607 408 342 62 45 chr12 3000920 3001272 -118256258 + L1ME3B LINE L1 5535 5892 -348 1 607 227 330 40 27 chr12 3001755 3001921 -118255609 - L2b LINE L2 -279 3096 2930 2 607 2922 30 0 3 chr12 3002338 3002676 -118254854 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 607 56633 24 10 9 chr12 3002676 3009141 -118248389 + IAPEz-int LTR ERVK 8 6481 0 3 607 2922 30 0 3 chr12 3009141 3009479 -118248051 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 607 382 292 54 13 chr12 3009939 3010088 -118247442 + MER20 DNA MER1_type 64 218 -1 4 607 618 307 123 22 chr12 3010122 3010398 -118247132 + Arthur1 DNA Tip100 368 671 -3276 5 607 462 256 43 49 chr12 3010466 3010630 -118246900 + RSINE1 SINE B4 3 165 0 6 607 196 237 62 92 chr12 3011943 3012073 -118245457 - MIR SINE MIR -90 172 47 7 607 267 367 0 11 chr12 3014038 3014139 -118243391 - PB1D7 SINE Alu -6 114 15 8 75 1670 226 31 81 chr12 3014398 3015027 -118242503 - RLTR1D LTR ERV1 0 605 52 9 608 8675 248 28 25 chr12 3015048 3018387 -118239143 - MMERGLN-int LTR ERV1 0 7778 4266 1 608 18110 234 18 11 chr12 3018384 3022328 -118235202 - MMERGLN-int LTR ERV1 -3510 4046 27 1 608 405 0 0 0 chr12 3022414 3022459 -118235071 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 608 192 200 0 0 chr12 3023179 3023229 -118234301 + CT-rich Low_complexity Low_complexity 1 50 0 1 608 247 263 26 13 chr12 3023348 3023425 -118234105 - MER5A DNA MER1_type -110 79 2 1 608 351 0 0 0 chr12 3025316 3025355 -118232175 + (T)n Simple_repeat Simple_repeat 1 39 0 1 608 280 202 23 20 chr12 3026191 3026298 -118231232 + PB1D9 SINE Alu 23 132 -17 1 608 228 250 59 0 chr12 3026799 3026867 -118230663 - B3A SINE B2 -117 81 10 1 608 2884 133 13 7 chr12 3027225 3027685 -118229845 - L1_Mus4 LINE L1 0 6636 6174 1 608 282 173 0 0 chr12 3027696 3027771 -118229759 + GA-rich Low_complexity Low_complexity 2 76 0 1 608 254 389 28 0 chr12 3027826 3027934 -118229596 + RSINE1 SINE B4 3 113 -52 1 608 3066 167 10 2 chr12 3028238 3028813 -118228717 + L1_Mur2 LINE L1 3100 3679 -2198 2 608 689 215 30 15 chr12 3029242 3029374 -118228156 + ETnERV2-int LTR ERVK 7059 7192 -214 2 608 6914 110 27 12 chr12 3030182 3030261 -118227269 - L1_Mus4 LINE L1 -4 6632 6554 2 608 423 0 0 0 chr12 3030261 3030308 -118227222 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 608 6914 110 27 12 chr12 3030308 3030622 -118226908 - L1_Mus4 LINE L1 -83 6553 6230 2 608 2013 139 74 33 chr12 3030622 3031015 -118226515 + RLTR9E LTR ERVK 1 409 0 2 608 10259 137 18 10 chr12 3031015 3032482 -118225048 - L1_Mus4 LINE L1 -407 6229 4745 2 608 3133 20 0 0 chr12 3032482 3032828 -118224702 + ORR1A0 LTR MaLR 1 346 0 2 608 10259 157 11 8 chr12 3032828 3033481 -118224049 - L1_Mus4 LINE L1 -1139 4744 4098 2 608 1903 98 0 0 chr12 3033463 3033748 -118223782 - L1VL4 LINE L1 -5314 988 704 2 608 2119 124 18 6 chr12 3033748 3034081 -118223449 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 608 6766 53 12 18 chr12 3034083 3034938 -118222592 - IAPEz-int LTR ERVK -2 6479 5630 2 608 10902 86 88 20 chr12 3034924 3037743 -118219787 - IAPEz-int LTR ERVK -3405 3076 66 2 608 876 61 19 0 chr12 3037737 3037878 -118219652 - IAPEz-int LTR ERVK -1866 121 11 2 608 317 96 77 64 chr12 3037903 3037981 -118219549 - IAPEz-int LTR ERVK -1906 81 3 2 608 2119 124 18 6 chr12 3037983 3038316 -118219214 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 608 1325 257 6 21 chr12 3038316 3038650 -118218880 - L1VL4 LINE L1 -5593 709 381 2 608 1497 169 80 126 chr12 3038721 3039181 -118218349 - L1_Mur2 LINE L1 -514 5363 4925 2 608 2545 150 5 0 chr12 3039184 3039611 -118217919 + L1_Mur2 LINE L1 4178 4606 -1271 2 608 181 272 11 80 chr12 3040512 3040600 -118216930 + MIR3 SINE MIR 15 96 -112 3 608 195 42 0 0 chr12 3041123 3041147 -118216383 + (CAG)n Simple_repeat Simple_repeat 3 26 0 3 608 258 116 0 0 chr12 3041201 3041244 -118216286 + (CAG)n Simple_repeat Simple_repeat 1 43 0 3 608 1916 163 0 26 chr12 3042531 3042871 -118214659 + L1_Mm LINE L1 4601 4931 -952 3 608 558 339 63 29 chr12 3042957 3043580 -118213950 - L1_Rod LINE L1 -3938 1909 1266 3 608 2113 192 103 62 chr12 3043583 3044231 -118213299 - RMER6C LTR ERVK -15 675 1 3 608 601 212 17 0 chr12 3044397 3044515 -118213015 + PB1D9 SINE Alu 1 120 0 3 608 471 264 11 84 chr12 3046399 3046577 -118210953 + RLTR19-int LTR ERVK 3548 3712 -2425 3 608 2447 144 96 40 chr12 3046577 3047108 -118210422 - MT2B2 LTR ERVL -45 539 1 3 608 381 169 193 0 chr12 3047138 3047221 -118210309 - LSU-rRNA_Hsa rRNA rRNA -735 4300 4202 3 608 210 118 0 0 chr12 3047244 3047278 -118210252 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 608 654 222 11 11 chr12 3047384 3047562 -118209968 + RMER3D-int LTR ERVK 1098 1275 -1567 4 608 612 0 0 0 chr12 3047566 3047634 -118209896 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 4 608 1134 65 0 0 chr12 3047634 3047773 -118209757 - B1_Mus1 SINE Alu -9 139 1 4 608 251 308 39 0 chr12 3047907 3047985 -118209545 + RSINE1 SINE B4 54 134 -31 4 608 423 0 0 0 chr12 3047990 3048037 -118209493 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 608 1142 152 47 14 chr12 3048894 3049108 -118208422 - Lx3A LINE L1 -3 6978 6758 4 608 224 259 34 17 chr12 3050312 3050371 -118207159 + ID SINE ID 8 67 -157 4 608 214 276 0 95 chr12 3050329 3050413 -118207117 + BC1_Mm scRNA scRNA 25 100 -52 4 608 207 0 0 0 chr12 3050586 3050609 -118206921 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 608 245 89 0 22 chr12 3050611 3050657 -118206873 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 608 263 340 66 0 chr12 3050716 3050822 -118206708 + RSINE1 SINE B4 15 127 -38 5 608 2917 179 10 27 chr12 3051151 3051744 -118205786 + L1_Mur2 LINE L1 3097 3679 -2198 5 608 2864 103 20 18 chr12 3051878 3052322 -118205208 + L1_Mus3 LINE L1 6191 6635 -3 5 608 388 177 15 0 chr12 3052350 3052430 -118205100 + L1_Rod LINE L1 4202 4308 -1835 5 608 279 230 39 110 chr12 3052446 3052573 -118204957 - Lx8 LINE L1 -1224 6249 6132 5 608 513 280 97 14 chr12 3052647 3052792 -118204738 - RSINE1 SINE B4 -3 162 6 5 608 534 336 79 36 chr12 3053839 3054085 -118203445 - L1MD1 LINE L1 -19 6223 5968 5 608 1415 204 84 42 chr12 3054085 3054444 -118203086 - ORR1D1 LTR MaLR 0 374 1 5 608 534 336 79 36 chr12 3054444 3054691 -118202839 - L1MD1 LINE L1 -275 5967 5709 5 608 710 200 0 0 chr12 3054697 3054822 -118202708 - Lx6 LINE L1 -1091 6369 6245 5 608 400 243 110 0 chr12 3055654 3055790 -118201740 - L1MD1 LINE L1 -754 5488 5338 5 608 232 289 19 0 chr12 3055962 3056014 -118201516 + tRNA-Ala-GCA tRNA tRNA 5 57 -18 5 608 312 271 74 0 chr12 3056043 3056165 -118201365 - L1MD1 LINE L1 -991 5155 5025 5 608 2157 245 16 3 chr12 3056193 3056772 -118200758 + Lx4B LINE L1 6023 6859 -117 6 608 374 256 51 8 chr12 3056803 3056921 -118200609 - L1MD1 LINE L1 -1151 4995 4873 5 608 2920 244 48 16 chr12 3056929 3057661 -118199869 - Lx6 LINE L1 -921 6539 5785 6 608 2442 124 48 50 chr12 3058268 3058744 -118198786 + IAPLTR2_Mm LTR ERVK 1 475 0 6 608 253 83 0 0 chr12 3058746 3058782 -118198748 + IAPEz-int LTR ERVK 3 38 -1949 6 608 3485 69 7 29 chr12 3058782 3059521 -118198009 + IAPEz-int LTR ERVK 17 662 -5819 6 608 464 78 0 30 chr12 3059521 3059587 -118197943 + IAPEz-int LTR ERVK 1359 1422 -5059 6 608 1821 123 4 4 chr12 3059573 3059835 -118197695 + IAPEz-int LTR ERVK 2236 2497 -5183 6 608 937 88 24 0 chr12 3059830 3059955 -118197575 + IAPEz-int LTR ERVK 4783 4910 -2770 6 608 26927 14 3 0 chr12 3059955 3062902 -118194628 + IAPEz-int LTR ERVK 3525 6481 0 6 608 2490 124 46 50 chr12 3062902 3063379 -118194151 + IAPLTR2_Mm LTR ERVK 1 475 0 6 608 1697 205 49 4 chr12 3064101 3064450 -118193080 - Lx6 LINE L1 -493 5819 5468 6 608 658 252 23 14 chr12 3064427 3064644 -118192886 - Lx6 LINE L1 -4121 1759 1541 6 608 480 67 0 0 chr12 3064643 3064703 -118192827 + Lx2 LINE L1 6240 6299 -698 6 608 7681 201 3 3 chr12 3064697 3066196 -118191334 - L1_Mm LINE L1 -30 5853 4356 6 608 5189 53 2 2 chr12 3066743 3067371 -118190159 + L1Md_F2 LINE L1 5924 6551 -31 6 608 2879 178 14 7 chr12 3067366 3067932 -118189598 + L1Md_A LINE L1 410 979 -5745 6 608 35661 81 14 18 chr12 3067932 3074103 -118183427 + L1_Mus1 LINE L1 217 6567 0 6 608 2009 200 104 0 chr12 3074157 3074657 -118182873 + L1_Mur2 LINE L1 3938 4489 -1388 6 608 2785 184 7 9 chr12 3074660 3075213 -118182317 - MT2B LTR ERVL -49 552 1 7 608 4748 193 30 91 chr12 3075213 3075445 -118182085 - ORR1A3-int LTR MaLR -394 1569 1320 7 608 4300 25 0 0 chr12 3075445 3075927 -118181603 - LTRIS_Mm LTR ERV1 0 482 1 7 608 4748 193 30 91 chr12 3075927 3077047 -118180483 - ORR1A3-int LTR MaLR -644 1319 299 7 608 1726 161 10 0 chr12 3077070 3077361 -118180169 - MYSERV6-int LTR ERVK -7664 1295 1002 7 608 183 114 0 0 chr12 3077361 3077396 -118180134 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 7 608 228 137 0 0 chr12 3077434 3077485 -118180045 + (A)n Simple_repeat Simple_repeat 1 51 0 7 608 4060 220 51 31 chr12 3077485 3078471 -118179059 - MYSERV6-int LTR ERVK -7954 1005 1 7 608 525 209 8 23 chr12 3078471 3078603 -118178927 - RMER6B LTR ERVK 0 461 332 7 608 1986 73 7 4 chr12 3078767 3079042 -118178488 - L1_Mus4 LINE L1 -6 6630 6355 7 608 655 158 55 0 chr12 3079209 3079336 -118178194 - RMER6B LTR ERVK -326 135 2 7 608 809 191 10 55 chr12 3079510 3079709 -118177821 - B2_Mm2 SINE B2 -4 191 2 7 608 2080 204 122 0 chr12 3079824 3080266 -118177264 - RLTR19 LTR ERVK -1 498 3 7 608 2040 203 32 43 chr12 3081329 3081834 -118175696 + RLTR19 LTR ERVK 1 715 0 7 608 243 227 13 26 chr12 3084520 3084597 -118172933 + (TCTCTG)n Simple_repeat Simple_repeat 6 81 0 8 608 200 288 25 12 chr12 3084665 3084746 -118172784 - MER5A DNA MER1_type -96 93 12 8 608 1621 119 4 36 chr12 3087396 3087675 -118169855 - Lx3A LINE L1 -4 6977 6708 8 608 3060 98 40 0 chr12 3087675 3088125 -118169405 - L1_Mur1 LINE L1 -1208 4678 4211 8 608 195 42 0 0 chr12 3089117 3089141 -118168389 + (CAGC)n Simple_repeat Simple_repeat 2 25 0 8 608 442 285 132 20 chr12 3089464 3089492 -118168038 + LTR16A LTR ERVL 228 255 -196 8 608 2528 130 53 19 chr12 3089492 3089908 -118167622 + RLTR23 LTR ERV1 1 430 0 8 608 442 285 132 20 chr12 3089908 3090076 -118167454 + LTR16A LTR ERVL 256 446 -5 8 608 292 223 66 74 chr12 3090133 3090254 -118167276 - MTEa LTR MaLR 0 379 260 8 608 470 256 138 32 chr12 3090256 3090596 -118166934 + RMER10A LTR ERVL 3 426 -16 8 608 432 216 73 73 chr12 3090699 3090849 -118166681 - MTEa LTR MaLR -229 150 1 8 608 234 238 150 53 chr12 3090911 3091044 -118166486 - L1M5 LINE L1 -630 5549 5404 8 608 222 37 0 0 chr12 3093230 3093257 -118164273 + (C)n Simple_repeat Simple_repeat 1 27 0 9 608 489 150 0 0 chr12 3093482 3093582 -118163948 + (CA)n Simple_repeat Simple_repeat 1 100 0 9 608 245 270 189 0 chr12 3093598 3093709 -118163821 + Charlie2a DNA MER1_type 219 350 -2511 9 608 766 321 69 34 chr12 3093751 3094187 -118163343 + RLTR17 LTR ERVK 116 566 -126 9 608 317 191 32 0 chr12 3094256 3094319 -118163211 + RLTR31_Mur LTR ERVK 489 553 0 9 608 470 246 129 14 chr12 3094686 3094826 -118162704 - B3A SINE B2 -41 157 2 9 608 746 262 48 69 chr12 3095797 3096201 -118161329 + RLTR11B LTR ERVK 1 413 -28 9 608 331 303 45 15 chr12 3096406 3096540 -118160990 + RSINE1 SINE B4 9 146 -19 9 608 707 235 53 27 chr12 3097114 3097302 -118160228 + B3A SINE B2 5 197 -1 9 608 324 0 0 0 chr12 3097314 3097350 -118160180 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 608 442 279 39 13 chr12 3097565 3097721 -118159809 + B4A SINE B4 114 273 -19 1 608 4212 31 0 0 chr12 3098735 3099217 -118158313 - LTRIS_Mm LTR ERV1 0 482 1 1 608 1343 57 6 0 chr12 3099295 3099472 -118158058 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 608 207 267 88 11 chr12 3099530 3099621 -118157909 - L3b LINE CR1 -196 286 189 1 608 303 206 137 0 chr12 3099821 3099923 -118157607 + Lx9 LINE L1 7522 7637 -7 1 608 4292 78 18 2 chr12 3100040 3100604 -118156926 - L1_Mus3 LINE L1 -3 6635 6063 1 608 188 88 59 0 chr12 3101057 3101091 -118156439 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 1 608 189 242 97 0 chr12 3101138 3101200 -118156330 + L3b LINE CR1 301 368 -114 1 608 896 240 31 97 chr12 3101442 3101732 -118155798 - B4 SINE B4 -8 284 14 1 608 216 0 0 0 chr12 3102503 3102527 -118155003 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 608 34716 69 4 5 chr12 3102630 3108853 -118148677 - L1Md_F2 LINE L1 0 6582 367 1 608 1924 48 0 0 chr12 3109871 3110121 -118147409 + GSAT_MM Satellite Satellite 22 271 -200 1 608 503 48 0 24 chr12 3110424 3110509 -118147021 + L1Md_F2 LINE L1 6500 6582 0 1 608 3325 68 31 0 chr12 3111992 3112416 -118145114 + Lx3_Mus LINE L1 6565 7001 -8 1 608 686 12 12 0 chr12 3112426 3112509 -118145021 + (GAAAA)n Simple_repeat Simple_repeat 2 85 0 1 608 246 357 10 0 chr12 3112536 3112634 -118144896 + RMER15 LTR ERVL 422 520 -55 1 608 22 35 0 0 chr12 3112698 3112727 -118144803 + AT_rich Low_complexity Low_complexity 1 29 0 1 608 1151 68 0 0 chr12 3112931 3113064 -118144466 + B1_Mm SINE Alu 2 134 -13 1 608 271 42 62 0 chr12 3113064 3113112 -118144418 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 608 378 246 0 0 chr12 3113266 3113380 -118144150 + (CA)n Simple_repeat Simple_repeat 1 114 0 1 608 558 257 46 26 chr12 3113611 3113763 -118143767 + RSINE1 SINE B4 11 165 0 1 608 41 21 0 0 chr12 3113777 3113825 -118143705 + AT_rich Low_complexity Low_complexity 1 48 0 1 608 6830 158 28 9 chr12 3113843 3115218 -118142312 - Lx2B LINE L1 -148 6910 5426 1 608 508 295 122 26 chr12 3115264 3115494 -118142036 - Looper DNA PiggyBac -519 1039 788 1 608 307 305 110 0 chr12 3115645 3115763 -118141767 - Looper DNA PiggyBac -955 603 473 1 608 694 231 5 85 chr12 3115789 3115978 -118141552 - B3 SINE B2 -8 208 35 1 608 630 292 103 59 chr12 3115980 3116189 -118141341 - Looper DNA PiggyBac -1060 498 305 1 608 4522 61 0 0 chr12 3116189 3116716 -118140814 - L1_Mus1 LINE L1 0 6567 6041 1 608 630 292 103 59 chr12 3116716 3116983 -118140547 - Looper DNA PiggyBac -1254 304 1 1 608 243 0 0 0 chr12 3117211 3117238 -118140292 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 608 388 311 33 146 chr12 3117441 3117741 -118139789 + B4 SINE B4 3 268 -24 1 608 1572 154 102 40 chr12 3117741 3118348 -118139182 - RMER6C LTR ERVK 0 720 206 1 608 3308 51 26 0 chr12 3118389 3118779 -118138751 - MTB LTR MaLR 0 400 1 1 608 7585 77 58 71 chr12 3118782 3119892 -118137638 - MTB-int LTR MaLR -3 1095 1 1 608 1710 48 70 0 chr12 3119918 3120145 -118137385 - ORR1A1 LTR MaLR -103 243 1 1 608 617 167 0 10 chr12 3120147 3120250 -118137280 - RMER6C LTR ERVK -588 102 1 1 608 1243 61 0 0 chr12 3120908 3121055 -118136475 + B1_Mm SINE Alu 1 147 0 1 608 1334 61 0 11 chr12 3121061 3121243 -118136287 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 608 396 0 0 0 chr12 3122801 3122845 -118134685 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 608 317 322 17 14 chr12 3123336 3123462 -118134068 - MIR SINE MIR -82 126 6 1 608 11793 173 90 56 chr12 3123803 3126855 -118130675 + ETnERV3-int LTR ERVK 2235 5389 -419 1 608 1772 133 0 0 chr12 3126855 3127111 -118130419 + ETnERV3-int LTR ERVK 5529 5784 -24 1 608 3818 117 52 18 chr12 3127131 3128202 -118129328 + RLTR13D1 LTR ERVK 3 806 0 1 608 313 250 43 47 chr12 3128294 3128438 -118129092 + MIRc SINE MIR 45 180 -28 1 608 4291 197 71 37 chr12 3128904 3129681 -118127849 + Lx7 LINE L1 154 965 -6763 1 608 1106 183 60 9 chr12 3129681 3129896 -118127634 - URR1A DNA MER1_type 0 226 1 1 608 4291 197 71 37 chr12 3129896 3130163 -118127367 + Lx7 LINE L1 966 1233 -6495 1 608 1785 131 3 27 chr12 3130166 3130463 -118127067 - Lx2B LINE L1 0 7000 6711 1 608 2623 118 3 13 chr12 3130463 3130851 -118126679 + Lx2B LINE L1 6318 6701 -299 1 608 4844 200 28 47 chr12 3130845 3131867 -118125663 + Lx7 LINE L1 6365 7367 -329 1 608 248 53 26 0 chr12 3131885 3131923 -118125607 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 608 1472 182 65 12 chr12 3131930 3132252 -118125278 + Lx7 LINE L1 7356 7694 -2 1 608 1190 92 0 6 chr12 3132259 3132434 -118125096 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 1 608 270 284 22 22 chr12 3133124 3133214 -118124316 - MIRc SINE MIR -115 153 64 1 608 255 158 61 31 chr12 3133512 3133610 -118123920 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 608 308 290 0 0 chr12 3136201 3136263 -118121267 + ID4 SINE ID 3 64 -19 1 608 803 39 10 0 chr12 3136769 3136872 -118120658 + (GAGAA)n Simple_repeat Simple_repeat 2 105 0 1 608 2124 141 47 102 chr12 3137568 3138093 -118119437 + RLTR1B LTR ERV1 1 512 0 1 608 22 0 0 0 chr12 3138354 3138376 -118119154 + AT_rich Low_complexity Low_complexity 1 22 0 1 608 625 288 17 22 chr12 3138383 3138564 -118118966 - B3A SINE B2 -15 183 4 1 608 297 0 0 0 chr12 3138582 3138615 -118118915 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 608 2317 136 66 23 chr12 3139078 3139470 -118118060 + RLTR9E LTR ERVK 1 409 0 1 608 207 79 79 0 chr12 3139686 3139724 -118117806 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 608 822 259 12 0 chr12 3139763 3139933 -118117597 - B4A SINE B4 -77 215 44 1 608 488 45 15 0 chr12 3139935 3140002 -118117528 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 608 451 260 35 128 chr12 3140008 3140180 -118117350 - B3A SINE B2 -42 156 1 1 608 1103 270 29 7 chr12 3140844 3141116 -118116414 + B4A SINE B4 9 286 -6 1 608 834 66 1 60 chr12 3141901 3142038 -118115492 + B1_Mus2 SINE Alu 18 147 0 1 608 218 32 32 0 chr12 3142038 3142069 -118115461 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 1 608 657 273 41 10 chr12 3142363 3142559 -118114971 - MLT1B LTR MaLR -2 388 187 1 608 384 288 48 58 chr12 3142633 3142821 -118114709 - MLT1B LTR MaLR -201 189 4 1 608 908 286 50 58 chr12 3142823 3143183 -118114347 - ORR1E LTR MaLR -2 357 1 1 608 349 334 75 65 chr12 3143303 3143687 -118113843 - L2 LINE L2 -1742 1677 1290 1 608 3161 51 58 2 chr12 3143688 3144117 -118113413 - RLTR45 LTR ERVK 0 482 30 1 608 6551 45 5 1 chr12 3144120 3144881 -118112649 - RLTR45-int LTR ERVK -73 7171 6408 1 9 23697 36 7 15 chr12 3144880 3146865 -118110665 - RLTR45-int LTR ERVK -1007 6237 4257 1 609 1272 54 0 0 chr12 3146865 3147012 -118110518 + B1_Mus2 SINE Alu 1 147 0 1 609 23697 36 7 15 chr12 3147012 3147908 -118109622 - RLTR45-int LTR ERVK -2988 4256 3380 1 609 11193 33 6 16 chr12 3147881 3149248 -118108282 - RLTR45-int LTR ERVK -4033 3211 1859 1 609 10712 58 48 17 chr12 3149243 3150611 -118106919 - RLTR45-int LTR ERVK -5827 1417 7 1 609 5394 68 0 1 chr12 3150796 3151475 -118106055 + L1Md_F LINE L1 429 1106 -5413 1 609 322 114 14 14 chr12 3151524 3151595 -118105935 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 1 609 525 32 0 0 chr12 3151622 3151685 -118105845 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 609 1165 248 110 25 chr12 3151685 3152004 -118105526 + Lx8 LINE L1 6348 6693 -780 1 609 471 357 37 23 chr12 3152038 3152256 -118105274 + Lx8 LINE L1 7040 7260 -213 1 609 1867 199 63 5 chr12 3152263 3152640 -118104890 - MTD LTR MaLR 0 419 19 1 609 4386 77 25 11 chr12 3152640 3153191 -118104339 + L1_Mus2 LINE L1 6008 6566 0 1 609 1867 199 63 5 chr12 3153191 3153207 -118104323 - MTD LTR MaLR -401 18 4 1 609 2000 98 0 0 chr12 3154573 3154848 -118102682 - MTA_Mm LTR MaLR -121 275 1 1 609 512 317 97 39 chr12 3154971 3155361 -118102169 - L1MA5 LINE L1 -8 6292 5880 1 609 912 147 20 20 chr12 3155692 3155838 -118101692 - B1_Mur4 SINE Alu -4 146 1 1 609 826 270 14 24 chr12 3155864 3156073 -118101457 - ID_B1 SINE B4 -17 207 1 1 609 333 0 0 0 chr12 3156092 3156129 -118101401 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 609 444 37 0 0 chr12 3156659 3156713 -118100817 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 609 216 335 155 42 chr12 3156813 3156981 -118100549 - B4A SINE B4 -105 187 1 1 609 480 349 42 46 chr12 3157211 3157590 -118099940 - LTR16D1 LTR ERVL -9 642 192 1 609 220 264 0 19 chr12 3157695 3157749 -118099781 + CT-rich Low_complexity Low_complexity 3 55 0 1 609 233 259 169 67 chr12 3157880 3158058 -118099472 + MLT1G3 LTR MaLR 103 298 -297 1 609 207 108 0 26 chr12 3159005 3159043 -118098487 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 1 609 223 343 39 19 chr12 3159447 3159551 -118097979 - MIRb SINE MIR -122 146 41 1 609 659 214 45 139 chr12 3159551 3159875 -118097655 + L1MA7 LINE L1 5625 5951 -340 1 609 529 152 0 152 chr12 3159866 3159998 -118097532 + RMER1C Other Other 1111 1222 -120 1 609 431 191 27 0 chr12 3160003 3160113 -118097417 + CT-rich Low_complexity Low_complexity 2 114 0 1 609 628 199 38 0 chr12 3160113 3160244 -118097286 + RMER1C Other Other 1204 1339 -3 1 609 614 270 94 44 chr12 3160255 3160573 -118096957 + L1MA7 LINE L1 5953 6286 -5 1 609 234 287 138 0 chr12 3160583 3160670 -118096860 + PB1 SINE Alu 2 100 -27 1 609 483 265 8 0 chr12 3160595 3160712 -118096818 + ID_B1 SINE B4 96 213 -11 1 609 2419 148 35 17 chr12 3160890 3161296 -118096234 - MTC LTR MaLR -8 413 1 1 609 194 247 64 96 chr12 3161471 3161565 -118095965 + MIRm SINE MIR 87 177 -99 1 609 204 97 0 0 chr12 3162359 3162390 -118095140 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1 609 414 282 51 45 chr12 3162473 3162651 -118094879 - L1MA9 LINE L1 0 6312 6134 1 609 218 310 14 27 chr12 3162836 3162909 -118094621 - B4A SINE B4 -220 72 1 1 609 276 178 0 0 chr12 3162910 3162955 -118094575 - L1M3 LINE L1 -462 5829 5785 1 609 1432 214 80 12 chr12 3163018 3163354 -118094176 - ORR1D2 LTR MaLR -8 362 4 1 609 391 217 36 0 chr12 3163363 3163446 -118094084 - L1M3 LINE L1 -572 5728 5643 1 609 783 263 33 1 chr12 3163529 3163782 -118093748 - L1M3 LINE L1 -563 5605 5343 1 609 733 291 137 51 chr12 3163801 3164584 -118092946 - L1M3 LINE L1 -856 5284 4435 1 609 983 101 14 0 chr12 3164590 3164729 -118092801 + B1_Mus2 SINE Alu 1 141 -6 1 609 1461 6 0 0 chr12 3164731 3164897 -118092633 + (GAA)n Simple_repeat Simple_repeat 3 168 0 1 609 225 215 90 30 chr12 3165204 3165271 -118092259 - L1M3 LINE L1 -1773 4370 4300 1 609 640 306 71 25 chr12 3165345 3165543 -118091987 - B4 SINE B4 -5 287 81 1 609 305 157 28 14 chr12 3165546 3165617 -118091913 - L1M3 LINE L1 -1836 4307 4236 1 609 483 195 0 0 chr12 3165619 3165737 -118091793 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 609 292 263 83 25 chr12 3165737 3165858 -118091672 - MTEa LTR MaLR 0 379 252 1 609 490 277 36 28 chr12 3166192 3166372 -118091158 - B3A SINE B2 -9 184 1 1 609 253 243 95 0 chr12 3166377 3166451 -118091079 - L1MC LINE L1 -1938 4208 4128 1 609 189 74 0 0 chr12 3167202 3167229 -118090301 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 2 609 189 0 0 0 chr12 3167334 3167355 -118090175 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 609 1269 52 0 0 chr12 3167355 3167588 -118089942 + (CA)n Simple_repeat Simple_repeat 1 233 0 2 609 185 0 40 0 chr12 3169289 3169314 -118088216 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2 609 396 0 0 0 chr12 3169689 3169733 -118087797 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 609 298 254 0 0 chr12 3170374 3170437 -118087093 - ID4_ SINE ID -19 64 2 2 609 21 0 0 0 chr12 3170715 3170736 -118086794 + AT_rich Low_complexity Low_complexity 1 21 0 2 609 6507 55 5 10 chr12 3171005 3171816 -118085714 - RLTR13C2 LTR ERVK 0 808 2 2 609 831 247 44 53 chr12 3172107 3172464 -118085066 - RLTR10D LTR ERVK 0 411 1 2 609 249 149 0 75 chr12 3172933 3173013 -118084517 + (TATAA)n Simple_repeat Simple_repeat 3 76 0 2 609 2368 119 17 47 chr12 3173160 3173582 -118083948 - RLTR9E LTR ERVK 0 409 1 2 609 355 259 86 14 chr12 3173671 3173826 -118083704 - L1MA5 LINE L1 -56 6244 6080 2 609 401 228 163 0 chr12 3173960 3174083 -118083447 - B3A SINE B2 -55 143 1 2 609 517 208 283 7 chr12 3174432 3174717 -118082813 - MTD LTR MaLR -33 388 17 2 609 1116 279 146 17 chr12 3174739 3175281 -118082249 - MTC-int LTR MaLR -2 1578 673 2 609 982 198 35 10 chr12 3175289 3175488 -118082042 - B3 SINE B2 -4 212 9 2 609 759 264 27 144 chr12 3175619 3176022 -118081508 - ORR1D2 LTR MaLR -14 356 1 2 609 1196 110 33 11 chr12 3176078 3176262 -118081268 + B2_Mm2 SINE B2 1 188 -7 2 609 228 319 0 14 chr12 3176596 3176669 -118080861 - PB1D10 SINE Alu -14 103 32 2 609 369 0 0 0 chr12 3176801 3176842 -118080688 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 609 511 204 29 19 chr12 3177118 3177223 -118080307 + B1_Mus1 SINE Alu 37 142 -6 2 609 180 243 92 26 chr12 3178687 3178763 -118078767 - L3 LINE CR1 -286 4203 4123 2 609 441 0 0 0 chr12 3179324 3179373 -118078157 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 609 214 246 15 0 chr12 3179508 3179573 -118077957 + (CAG)n Simple_repeat Simple_repeat 2 67 0 2 609 24 0 0 0 chr12 3179731 3179755 -118077775 + AT_rich Low_complexity Low_complexity 1 24 0 2 609 2986 32 6 3 chr12 3179881 3180226 -118077304 + ORR1A0 LTR MaLR 1 346 0 2 609 1991 153 94 6 chr12 3181452 3181814 -118075716 - ORR1B1 LTR MaLR 0 394 1 2 609 434 263 90 18 chr12 3181845 3182003 -118075527 + B3A SINE B2 8 177 -18 2 609 675 212 28 55 chr12 3182017 3182162 -118075368 - B1_Mur2 SINE Alu -8 141 1 2 609 2623 49 65 0 chr12 3182658 3182983 -118074547 - ORR1A1 LTR MaLR 0 346 1 2 609 685 186 15 15 chr12 3182983 3183119 -118074411 + B1_Mur2 SINE Alu 12 147 -2 2 609 216 0 0 0 chr12 3183124 3183148 -118074382 + (A)n Simple_repeat Simple_repeat 1 24 0 2 609 297 0 0 0 chr12 3183635 3183668 -118073862 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 609 1179 68 0 0 chr12 3183828 3183975 -118073555 - B1_Mus2 SINE Alu 0 147 1 2 609 232 305 147 0 chr12 3183976 3184153 -118073377 - Looper DNA PiggyBac -850 708 506 2 609 2945 63 35 22 chr12 3184485 3184891 -118072639 - RLTR10A LTR ERVK 0 411 1 2 609 856 203 0 0 chr12 3185675 3185823 -118071707 + B1_Mur4 SINE Alu 2 149 -1 2 609 401 272 149 74 chr12 3186736 3186978 -118070552 + B4 SINE B4 29 288 -4 2 609 23 33 0 0 chr12 3187282 3187312 -118070218 + AT_rich Low_complexity Low_complexity 1 30 0 2 609 236 342 0 13 chr12 3187330 3187407 -118070123 - ID4_ SINE ID -6 77 2 2 609 1613 160 133 6 chr12 3188207 3188559 -118068971 - MTC LTR MaLR 0 421 25 2 609 2510 183 245 50 chr12 3188547 3188939 -118068591 - MTC-int LTR MaLR -14 1244 789 2 609 189 0 0 0 chr12 3188939 3188960 -118068570 + (CTG)n Simple_repeat Simple_repeat 2 22 0 2 609 2510 183 245 50 chr12 3188960 3189272 -118068258 - MTC-int LTR MaLR -470 788 372 2 609 848 245 29 29 chr12 3189272 3189482 -118068048 - B3 SINE B2 -6 210 1 2 609 2510 183 245 50 chr12 3189482 3189583 -118067947 - MTC-int LTR MaLR -887 371 280 2 609 370 275 0 0 chr12 3189602 3189724 -118067806 + IAPEz-int LTR ERVK 834 936 -5545 2 609 763 159 254 6 chr12 3189750 3189927 -118067603 - URR1A DNA MER1_type 0 226 6 2 609 693 212 6 32 chr12 3189931 3190087 -118067443 - MTC LTR MaLR -269 152 1 2 609 366 23 0 0 chr12 3190168 3190211 -118067319 + (TATG)n Simple_repeat Simple_repeat 1 43 0 2 609 676 301 6 0 chr12 3190211 3190374 -118067156 - B3 SINE B2 -52 164 1 2 609 345 284 11 0 chr12 3190389 3190484 -118067046 - L1MA6 LINE L1 -12 6288 6193 2 609 247 328 37 11 chr12 3191090 3191278 -118066252 - L1MA6 LINE L1 -304 5996 5804 2 609 532 301 21 14 chr12 3192073 3192218 -118065312 - RSINE1 SINE B4 -3 162 17 2 609 2382 65 0 0 chr12 3194280 3194574 -118062956 - L1_Mus1 LINE L1 0 6567 6274 2 609 1091 72 7 0 chr12 3194619 3194758 -118062772 - B1_Mus1 SINE Alu -8 140 1 2 609 983 161 148 20 chr12 3195142 3195338 -118062192 + URR1B DNA MER1_type 5 225 0 2 609 1363 36 60 0 chr12 3195992 3196158 -118061372 - L1Md_F2 LINE L1 -154 6428 6253 2 609 6525 54 1 3 chr12 3196155 3197331 -118060199 + L1Md_F2 LINE L1 5083 6257 -325 2 609 207 0 0 0 chr12 3198763 3198786 -118058744 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 609 411 21 0 0 chr12 3198892 3198940 -118058590 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 609 234 0 0 0 chr12 3201142 3201168 -118056362 + (A)n Simple_repeat Simple_repeat 1 26 0 2 609 22 0 0 0 chr12 3202622 3202644 -118054886 + AT_rich Low_complexity Low_complexity 1 22 0 2 609 958 162 22 27 chr12 3202695 3202879 -118054651 + URR1A DNA MER1_type 1 183 -43 2 609 587 264 12 54 chr12 3202894 3203062 -118054468 - ID_B1 SINE B4 -52 172 12 2 609 4415 70 24 29 chr12 3203127 3203717 -118053813 + LTRIS_Mus LTR ERV1 1 587 0 2 609 195 290 0 42 chr12 3204793 3204865 -118052665 - L2c LINE L2 -255 3132 3064 2 609 226 268 36 12 chr12 3205150 3205233 -118052297 + ORSL-2b DNA Tip100 401 485 -23 2 609 784 274 34 17 chr12 3205545 3205783 -118051747 - B4A SINE B4 -8 284 43 2 609 486 263 28 35 chr12 3206030 3206172 -118051358 - ID_B1 SINE B4 -1 223 83 2 609 320 287 48 16 chr12 3206405 3206529 -118051001 + MLT1D LTR MaLR 29 156 -349 2 609 396 300 10 0 chr12 3207420 3207520 -118050010 + ID_B1 SINE B4 81 181 -43 2 609 3829 31 0 15 chr12 3207520 3207980 -118049550 + L1Md_F2 LINE L1 6130 6582 0 2 609 318 235 39 102 chr12 3208107 3208143 -118049387 + B4 SINE B4 117 155 -137 2 609 4451 64 31 7 chr12 3208143 3208722 -118048808 - L1Md_F2 LINE L1 -12 6570 5978 2 609 318 235 39 102 chr12 3208722 3208813 -118048717 + B4 SINE B4 156 236 -56 2 609 810 189 57 47 chr12 3209118 3209329 -118048201 - ORR1D1 LTR MaLR -161 213 1 2 609 362 216 0 22 chr12 3209354 3209444 -118048086 - Lx8 LINE L1 -778 6695 6608 2 609 3654 118 6 7 chr12 3209931 3210471 -118047059 - Lx4A LINE L1 -31 7027 6489 2 609 247 278 0 0 chr12 3210524 3210578 -118046952 - Lx8 LINE L1 -170 7303 7250 2 609 577 142 122 30 chr12 3210602 3210733 -118046797 - Lx4B LINE L1 -17 7041 6899 2 609 321 333 64 81 chr12 3210932 3211167 -118046363 - B4A SINE B4 -20 272 42 2 609 21 0 0 0 chr12 3212025 3212046 -118045484 + AT_rich Low_complexity Low_complexity 1 21 0 2 609 294 270 0 11 chr12 3212090 3212180 -118045350 - Lx5 LINE L1 -26 7434 7346 2 609 855 227 101 16 chr12 3212195 3212485 -118045045 - Lx5 LINE L1 -574 6886 6486 2 609 331 243 73 73 chr12 3212521 3212672 -118044858 - RLTR31_Mm LTR ERVK 0 561 411 2 609 1276 191 3 64 chr12 3212665 3213023 -118044507 - RLTR31_Mur LTR ERVK -217 336 1 2 609 9196 230 77 15 chr12 3213032 3214360 -118043170 - Lx5 LINE L1 -744 6716 4955 2 609 1201 120 33 0 chr12 3214360 3214543 -118042987 - B2_Mm2 SINE B2 -6 189 1 2 609 9196 191 97 18 chr12 3214543 3215921 -118041609 - Lx5 LINE L1 -926 4954 3530 2 609 1202 124 11 0 chr12 3216022 3216199 -118041331 + B2_Mm1t SINE B2 1 179 -14 2 609 409 149 235 9 chr12 3216231 3216346 -118041184 + B2_Mm2 SINE B2 47 187 -8 2 609 416 211 58 0 chr12 3216456 3216560 -118040970 + L1MA9 LINE L1 6159 6268 -44 2 609 21 57 0 0 chr12 3216680 3216715 -118040815 + AT_rich Low_complexity Low_complexity 1 35 0 2 609 470 323 0 8 chr12 3216744 3216875 -118040655 - RSINE1 SINE B4 -31 134 5 2 609 4319 185 21 4 chr12 3217161 3218003 -118039527 - Lx2B LINE L1 -128 6872 6024 2 609 450 0 0 0 chr12 3218018 3218068 -118039462 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 609 243 326 101 0 chr12 3218969 3219058 -118038472 + PB1D10 SINE Alu 13 110 -7 2 609 443 264 62 0 chr12 3219072 3219201 -118038329 + B1_Mm SINE Alu 3 139 -8 2 609 591 245 49 7 chr12 3219230 3219374 -118038156 - Lx8 LINE L1 -153 7320 7171 2 609 666 227 0 0 chr12 3219485 3219613 -118037917 - B1_Mur1 SINE Alu -12 137 10 2 609 514 220 154 77 chr12 3220525 3220581 -118036949 + RLTR28B LTR ERVL 3 57 -424 2 609 225 0 0 0 chr12 3220581 3220606 -118036924 + (CCCCCT)n Simple_repeat Simple_repeat 3 27 0 2 609 514 220 154 77 chr12 3220606 3220731 -118036799 + RLTR28B LTR ERVL 58 198 -283 2 609 3520 63 2 11 chr12 3220731 3221208 -118036322 - L1_Mus1 LINE L1 0 6567 6123 2 609 715 266 156 40 chr12 3221587 3221908 -118035622 - Lx8 LINE L1 -6 7467 7110 2 609 252 0 0 0 chr12 3222621 3222649 -118034881 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 609 357 116 0 0 chr12 3222649 3222718 -118034812 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 2 609 249 346 0 25 chr12 3222806 3222886 -118034644 + ID4_ SINE ID 3 80 -3 2 609 448 226 123 46 chr12 3222948 3223078 -118034452 - ID_B1 SINE B4 -1 223 84 2 609 1064 264 60 30 chr12 3223093 3223429 -118034101 - Lx8 LINE L1 -116 7357 7012 2 609 292 268 18 35 chr12 3223433 3223603 -118033927 + (CACCC)n Simple_repeat Simple_repeat 4 170 0 3 609 305 253 171 5 chr12 3223621 3223718 -118033812 - B1F SINE Alu 0 120 2 3 609 2740 208 91 8 chr12 3223864 3224466 -118033064 - Lx9 LINE L1 -4 7640 6989 3 609 1626 225 98 3 chr12 3224606 3224985 -118032545 - MTD LTR MaLR 0 419 5 3 609 702 143 0 0 chr12 3225045 3225164 -118032366 + (GGAA)n Simple_repeat Simple_repeat 4 122 0 3 609 3672 25 2 0 chr12 3225358 3225753 -118031777 - MTA_Mm LTR MaLR 0 396 1 3 609 10129 20 2 1 chr12 3225753 3226850 -118030680 - MTA_Mm-int LTR MaLR 0 1098 1 3 609 3698 20 2 0 chr12 3226850 3227245 -118030285 - MTA_Mm LTR MaLR 0 396 1 3 609 273 278 136 58 chr12 3227317 3227420 -118030110 + PB1D10 SINE Alu 4 114 -3 3 609 258 195 16 79 chr12 3227466 3227559 -118029971 - MIRm SINE MIR 0 262 183 3 609 337 123 0 17 chr12 3227714 3227772 -118029758 - Lx8 LINE L1 -6 7467 7411 3 609 498 279 0 0 chr12 3228306 3228410 -118029120 - RSINE1 SINE B4 -60 105 2 3 609 380 335 66 30 chr12 3228441 3228607 -118028923 + B3A SINE B2 1 172 -26 3 609 185 94 0 30 chr12 3228609 3228642 -118028888 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 609 14664 71 15 3 chr12 3229903 3232482 -118025048 - L1_Mus1 LINE L1 -3 6564 3953 3 609 3521 28 15 0 chr12 3233233 3233623 -118023907 - MTA_Mm LTR MaLR 0 396 1 3 609 226 292 23 40 chr12 3239633 3239808 -118017722 + (TG)n Simple_repeat Simple_repeat 1 172 0 3 609 249 310 17 28 chr12 3240280 3240456 -118017074 + (TG)n Simple_repeat Simple_repeat 1 174 0 3 609 1223 44 0 0 chr12 3242143 3242279 -118015251 + B1_Mm SINE Alu 2 137 -10 3 609 183 42 0 0 chr12 3242279 3242303 -118015227 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 609 1874 72 0 17 chr12 3244365 3244604 -118012926 - L1_Mus2 LINE L1 -5 6561 6327 3 609 382 100 31 0 chr12 3245834 3245904 -118011626 - B2_Mm2 SINE B2 -95 121 47 3 609 1299 94 35 0 chr12 3245934 3246104 -118011426 - B2_Mm1t SINE B2 -16 177 2 3 609 235 204 12 28 chr12 3246243 3246254 -118011276 - ID_B1 SINE B4 -133 159 121 3 609 287 191 0 0 chr12 3246254 3246317 -118011213 - PB1D7 SINE Alu -56 64 2 3 609 365 185 145 24 chr12 3246600 3246683 -118010847 - B1_Mur1 SINE Alu -11 138 46 3 609 186 71 0 0 chr12 3247697 3247725 -118009805 + (T)n Simple_repeat Simple_repeat 1 28 0 3 609 391 189 106 43 chr12 3250147 3250241 -118007289 + PB1D10 SINE Alu 1 100 -17 3 609 736 219 80 0 chr12 3251131 3251268 -118006262 - B1_Mur1 SINE Alu 0 149 2 3 609 214 324 52 39 chr12 3251308 3251385 -118006145 - B1F2 SINE Alu -65 84 7 3 609 262 294 15 0 chr12 3251539 3251607 -118005923 - ID4 SINE ID -12 71 3 3 609 21 0 0 0 chr12 3251656 3251677 -118005853 + AT_rich Low_complexity Low_complexity 1 21 0 3 609 313 266 47 117 chr12 3251784 3251912 -118005618 - PB1D9 SINE Alu -1 119 1 3 609 1248 132 31 49 chr12 3252040 3252263 -118005267 - URR1A DNA MER1_type -3 223 5 3 609 380 219 122 70 chr12 3253463 3253646 -118003884 - B4A SINE B4 0 292 106 3 609 1092 176 26 11 chr12 3253654 3253843 -118003687 + B3 SINE B2 1 192 -24 3 609 1491 75 5 5 chr12 3253941 3254128 -118003402 - B2_Mm2 SINE B2 -6 189 3 3 609 443 270 38 48 chr12 3254451 3254556 -118002974 + B1F SINE Alu 27 130 -19 3 609 458 221 62 8 chr12 3254561 3254689 -118002841 + B3 SINE B2 82 216 0 3 609 458 271 109 19 chr12 3254651 3254829 -118002701 + ID_B1 SINE B4 46 223 -69 3 609 637 264 19 121 chr12 3255024 3255231 -118002299 + B3A SINE B2 8 193 -2 3 609 432 224 16 94 chr12 3255404 3255532 -118001998 - PB1D9 SINE Alu 0 120 3 3 609 234 212 125 116 chr12 3256004 3256043 -118001487 + L1M4 LINE L1 5163 5200 -946 3 609 503 182 394 7 chr12 3256043 3256198 -118001332 + ID_B1 SINE B4 2 216 -8 3 609 234 212 125 116 chr12 3256198 3256270 -118001260 + L1M4 LINE L1 5201 5275 -871 3 609 1524 80 16 0 chr12 3256314 3256501 -118001029 + B2_Mm2 SINE B2 1 190 -5 3 609 340 295 8 59 chr12 3256502 3256621 -118000909 + RSINE1 SINE B4 34 146 -19 3 609 1245 61 7 0 chr12 3257447 3257594 -117999936 - B1_Mus1 SINE Alu 0 148 1 3 609 1442 65 37 11 chr12 3257637 3257824 -117999706 - B2_Mm2 SINE B2 -2 193 2 3 609 956 200 46 51 chr12 3258011 3258227 -117999303 - B3 SINE B2 -1 215 1 3 609 276 247 130 33 chr12 3258245 3258337 -117999193 - B3 SINE B2 0 216 116 3 609 590 214 17 17 chr12 3258403 3258522 -117999008 - B1_Mur4 SINE Alu -16 134 16 3 609 597 234 85 15 chr12 3258559 3258689 -117998841 - B1_Mur1 SINE Alu -8 141 3 3 609 706 237 235 30 chr12 3258757 3259127 -117998403 + RLTR12B LTR ERVK 1 463 -65 3 609 413 188 25 0 chr12 3259262 3259342 -117998188 + B3A SINE B2 1 82 -116 3 609 520 291 26 20 chr12 3259442 3259593 -117997937 - RSINE1 SINE B4 -12 153 2 3 609 296 271 121 47 chr12 3259593 3259783 -117997747 - L1MD LINE L1 -1328 4818 4615 3 609 1425 77 27 11 chr12 3259830 3260015 -117997515 + B2_Mm2 SINE B2 1 188 -7 3 609 211 333 0 0 chr12 3260020 3260074 -117997456 - ID4 SINE ID -22 61 8 3 609 182 184 102 0 chr12 3260079 3260128 -117997402 + L2 LINE L2 1860 1913 -1506 3 609 245 186 31 78 chr12 3260176 3260240 -117997290 - tRNA-Ala-GCA tRNA tRNA -9 66 6 3 609 804 219 20 27 chr12 3260530 3260680 -117996850 - B3A SINE B2 -48 150 2 3 609 500 294 64 17 chr12 3260680 3260977 -117996553 - L1M4 LINE L1 -577 5607 5297 3 609 1872 99 193 189 chr12 3261659 3262109 -117995421 + RLTR44E LTR ERVK 1 452 0 3 609 192 97 0 0 chr12 3262192 3262223 -117995307 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 3 609 549 238 9 0 chr12 3263161 3263266 -117994264 - RSINE1 SINE B4 -20 145 40 3 609 977 88 87 7 chr12 3263437 3263575 -117993955 - B1_Mur3 SINE Alu 0 149 1 3 609 584 287 94 16 chr12 3263630 3263821 -117993709 - ID_B1 SINE B4 -2 222 17 3 609 681 220 0 0 chr12 3263904 3264022 -117993508 - B3A SINE B2 -77 121 4 3 609 21 0 0 0 chr12 3264875 3264896 -117992634 + AT_rich Low_complexity Low_complexity 1 21 0 3 609 387 0 0 0 chr12 3264930 3264973 -117992557 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 609 547 196 0 74 chr12 3264974 3265095 -117992435 - B1F2 SINE Alu -14 135 24 3 609 21 0 0 0 chr12 3265217 3265238 -117992292 + AT_rich Low_complexity Low_complexity 1 21 0 3 609 463 171 33 22 chr12 3265325 3265410 -117992120 + B4A SINE B4 144 229 -63 3 609 543 276 14 36 chr12 3265410 3265549 -117991981 + RSINE1 SINE B4 2 137 -28 3 609 274 288 41 0 chr12 3265593 3265666 -117991864 + B4A SINE B4 212 287 -5 3 609 578 213 37 0 chr12 3265693 3265801 -117991729 + B1_Mur4 SINE Alu 1 112 -38 3 609 1297 41 7 0 chr12 3265957 3266104 -117991426 + B1_Mus1 SINE Alu 1 148 0 3 609 372 207 73 0 chr12 3266378 3266460 -117991070 - B1F1 SINE Alu -52 97 10 3 609 1178 181 54 0 chr12 3266928 3267133 -117990397 + B3 SINE B2 1 216 0 3 609 277 250 233 69 chr12 3267425 3267457 -117990073 + B4A SINE B4 8 41 -251 3 609 957 238 73 151 chr12 3267457 3267868 -117989662 - MTE2a LTR MaLR 0 379 1 3 609 277 250 233 69 chr12 3267868 3267951 -117989579 + B4A SINE B4 42 142 -150 3 609 454 267 130 28 chr12 3268427 3268681 -117988849 + LTR48 LTR ERV1 439 718 -69 3 609 381 244 24 0 chr12 3268891 3268973 -117988557 + ID_B1 SINE B4 141 224 0 3 609 1029 142 227 0 chr12 3269293 3269469 -117988061 + B3 SINE B2 1 216 0 3 609 364 88 313 17 chr12 3269782 3269897 -117987633 - B2_Mm2 SINE B2 0 195 47 3 609 1077 91 149 0 chr12 3269944 3270098 -117987432 - B2_Mm1t SINE B2 -14 179 3 3 609 459 281 26 17 chr12 3270157 3270273 -117987257 - PB1D10 SINE Alu 0 117 1 3 609 1026 228 5 5 chr12 3270351 3270554 -117986976 + B3 SINE B2 9 211 -5 3 609 226 343 87 19 chr12 3270828 3270932 -117986598 + B4 SINE B4 77 187 -105 3 609 335 316 0 3 chr12 3270843 3270943 -117986587 + B1F2 SINE Alu 10 106 -11 3 609 2808 46 61 3 chr12 3271276 3271603 -117985927 + ORR1A1 LTR MaLR 1 346 0 3 609 231 278 86 50 chr12 3271689 3271829 -117985701 - MIRb SINE MIR 0 262 118 3 609 769 181 13 40 chr12 3271964 3272114 -117985416 - B1_Mur2 SINE Alu 0 149 4 3 609 411 279 178 24 chr12 3272376 3272629 -117984901 - L1MC4a LINE L1 -808 7074 6783 3 609 391 174 43 14 chr12 3272668 3272738 -117984792 - B3A SINE B2 -123 75 4 3 609 1095 81 60 0 chr12 3272771 3272920 -117984610 + B2_Mm2 SINE B2 1 158 -37 3 609 189 74 0 0 chr12 3272921 3272948 -117984582 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 609 507 289 191 9 chr12 3272971 3273316 -117984214 - L1MC4a LINE L1 -1139 6743 6336 3 609 322 231 17 0 chr12 3273317 3273384 -117984146 + ID4_ SINE ID 24 91 -61 3 609 297 384 65 65 chr12 3273388 3273711 -117983819 + MLT2B1 LTR ERVL 18 340 -180 3 609 31 0 0 0 chr12 3273902 3273933 -117983597 + AT_rich Low_complexity Low_complexity 1 31 0 3 609 456 259 83 0 chr12 3273982 3274090 -117983440 - PB1D10 SINE Alu 0 117 1 3 609 271 311 113 18 chr12 3274181 3274410 -117983120 - L1MEf LINE L1 -5086 1114 864 3 609 237 299 75 65 chr12 3274616 3274709 -117982821 - B1F SINE Alu -9 140 47 4 609 1424 55 43 11 chr12 3274709 3274893 -117982637 + B2_Mm2 SINE B2 2 191 -4 4 609 409 269 15 125 chr12 3274907 3274970 -117982560 - ID_B1 SINE B4 -17 207 144 4 609 790 60 419 15 chr12 3274970 3275106 -117982424 - B2_Mm2 SINE B2 -3 192 2 4 609 409 269 15 125 chr12 3275106 3275178 -117982352 - ID_B1 SINE B4 -81 143 87 4 609 226 283 22 77 chr12 3275172 3275248 -117982282 - RMER17D2 LTR ERVK -276 533 471 4 609 4494 45 2 0 chr12 3275248 3275761 -117981769 + L1Md_F2 LINE L1 6067 6580 -2 4 609 226 283 22 77 chr12 3275761 3275906 -117981624 - RMER17D2 LTR ERVK -339 470 325 4 609 740 228 13 26 chr12 3276585 3276738 -117980792 + B3 SINE B2 45 195 -21 4 610 1230 101 67 11 chr12 3277037 3277217 -117980313 + B2_Mm2 SINE B2 2 191 -4 4 610 595 203 139 8 chr12 3277462 3277591 -117979939 - B1_Mur2 SINE Alu -2 147 2 4 610 982 146 18 6 chr12 3277718 3277883 -117979647 - B2_Mm2 SINE B2 -25 170 4 4 610 231 125 0 0 chr12 3277903 3277943 -117979587 - PB1D9 SINE Alu 0 120 81 4 610 258 105 0 0 chr12 3278766 3278804 -117978726 + (CTTA)n Simple_repeat Simple_repeat 1 38 0 4 610 671 181 38 63 chr12 3278804 3278963 -117978567 - B2_Mm2 SINE B2 -39 156 2 4 610 1098 83 0 14 chr12 3279728 3279875 -117977655 + B1_Mus1 SINE Alu 2 146 -2 4 610 355 239 10 52 chr12 3279891 3279988 -117977542 - B3A SINE B2 -92 106 14 4 610 234 0 0 0 chr12 3280078 3280104 -117977426 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 610 237 65 0 0 chr12 3280104 3280135 -117977395 + (ATG)n Simple_repeat Simple_repeat 1 31 0 4 610 1118 86 97 6 chr12 3280420 3280596 -117976934 - B2_Mm1t SINE B2 -1 192 1 4 610 1221 55 0 0 chr12 3280669 3280815 -117976715 - B1_Mus2 SINE Alu 0 147 2 4 610 257 343 181 0 chr12 3280820 3280925 -117976605 - PB1 SINE Alu -3 124 1 4 610 304 248 105 31 chr12 3281350 3281512 -117976018 - Charlie1a DNA MER1_type -47 1408 1235 4 610 681 199 118 59 chr12 3281525 3281728 -117975802 + B3 SINE B2 2 216 0 4 610 268 264 132 41 chr12 3281657 3281854 -117975676 - Charlie1a DNA MER1_type -167 1288 1074 4 610 1396 97 5 7 chr12 3281854 3282097 -117975433 + L1_Mm LINE L1 3803 4037 -1843 4 610 1107 147 20 20 chr12 3282286 3282481 -117975049 - B2_Mm2 SINE B2 0 195 1 4 610 703 233 74 12 chr12 3282482 3282725 -117974805 - Charlie1a DNA MER1_type -489 966 709 4 610 335 211 24 64 chr12 3282727 3282842 -117974688 - B1F SINE Alu -1 119 7 4 610 285 254 336 9 chr12 3282850 3283168 -117974362 - Charlie1a DNA MER1_type -744 711 290 4 610 304 281 35 69 chr12 3283170 3283315 -117974215 - B1F2 SINE Alu 0 149 10 4 610 231 221 55 156 chr12 3283989 3284098 -117973432 + B1F SINE Alu 2 110 -7 4 610 326 299 111 7 chr12 3284108 3284243 -117973287 + B1F2 SINE Alu 1 149 0 4 610 222 297 62 0 chr12 3284285 3284349 -117973181 - ID4_ SINE ID -13 70 3 4 610 296 311 44 29 chr12 3284360 3284496 -117973034 - ID_B1 SINE B4 -3 221 84 4 610 711 197 0 157 chr12 3284585 3284814 -117972716 + B3A SINE B2 1 193 -5 4 610 482 279 8 24 chr12 3284817 3284942 -117972588 + B3A SINE B2 2 124 -74 4 610 222 37 0 0 chr12 3284942 3284969 -117972561 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 610 538 201 338 6 chr12 3285026 3285186 -117972344 + B3 SINE B2 1 213 -3 4 610 745 196 7 26 chr12 3285210 3285362 -117972168 + B1_Mur3 SINE Alu 1 149 0 4 610 407 242 32 21 chr12 3285397 3285490 -117972040 + PB1D10 SINE Alu 18 111 -6 4 610 276 233 342 0 chr12 3286400 3286520 -117971010 + RSINE1 SINE B4 3 163 -2 4 610 288 53 0 0 chr12 3286520 3286558 -117970972 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 4 610 455 303 19 31 chr12 3286570 3286730 -117970800 + RSINE1 SINE B4 4 161 -4 4 610 1477 50 22 6 chr12 3286744 3286927 -117970603 - B2_Mm2 SINE B2 -8 187 2 4 610 1165 57 0 0 chr12 3287333 3287474 -117970056 - B1_Mus2 SINE Alu -5 142 2 4 610 218 185 93 0 chr12 3287517 3287571 -117969959 + PB1D10 SINE Alu 24 82 -35 4 610 1733 116 133 15 chr12 3287934 3288257 -117969273 - ORR1B1 LTR MaLR -8 386 41 4 610 226 102 82 0 chr12 3288358 3288407 -117969123 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 4 610 337 133 123 55 chr12 3288659 3288780 -117968750 + Lx3B LINE L1 6852 6980 -1 4 610 378 171 12 47 chr12 3288989 3289075 -117968455 + URR1B DNA MER1_type 143 225 0 4 610 571 308 82 55 chr12 3289097 3289550 -117967980 + L1MA7 LINE L1 5827 6291 0 4 610 427 250 8 43 chr12 3289724 3289841 -117967689 - PB1D7 SINE Alu -5 115 3 4 610 810 269 0 73 chr12 3289872 3290105 -117967425 - B3 SINE B2 0 216 1 4 610 192 125 0 0 chr12 3290422 3290454 -117967076 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 610 664 224 7 40 chr12 3290455 3290604 -117966926 + B1_Mur4 SINE Alu 4 147 -3 4 610 23 33 0 0 chr12 3290655 3290685 -117966845 + AT_rich Low_complexity Low_complexity 1 30 0 4 610 479 288 15 36 chr12 3290837 3290974 -117966556 + RSINE1 SINE B4 32 165 0 4 610 1673 151 41 112 chr12 3291120 3291431 -117966099 + ORR1B1 LTR MaLR 29 343 -51 4 610 1130 88 0 13 chr12 3291431 3291581 -117965949 + B1_Mus1 SINE Alu 1 148 0 4 610 1673 151 41 112 chr12 3291581 3291663 -117965867 + ORR1B1 LTR MaLR 344 394 0 4 610 629 219 28 49 chr12 3291710 3291854 -117965676 - B1F SINE Alu -8 141 1 4 610 3523 25 2 0 chr12 3292351 3292746 -117964784 - MTA_Mm LTR MaLR 0 396 1 4 610 425 295 60 27 chr12 3293209 3293359 -117964171 + RSINE1 SINE B4 11 165 0 4 610 268 321 25 82 chr12 3293381 3293503 -117964027 + PB1D7 SINE Alu 1 115 -5 4 610 419 235 57 57 chr12 3293495 3293635 -117963895 + ID_B1 SINE B4 85 224 0 4 610 1130 51 0 0 chr12 3294014 3294151 -117963379 + B1_Mus1 SINE Alu 1 137 -11 4 610 914 158 14 0 chr12 3294359 3294498 -117963032 + B1_Mur4 SINE Alu 1 141 -9 4 610 279 0 0 0 chr12 3294498 3294529 -117963001 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 610 223 295 0 47 chr12 3294540 3294604 -117962926 + ID SINE ID 5 65 -159 4 610 590 281 140 4 chr12 3294737 3294973 -117962557 + B4 SINE B4 2 269 -23 4 610 399 21 0 0 chr12 3294973 3295021 -117962509 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 610 391 294 28 9 chr12 3295516 3295645 -117961885 - B3A SINE B2 -38 157 20 4 610 414 248 91 9 chr12 3296050 3296160 -117961370 - PB1D9 SINE Alu 0 120 2 4 610 261 242 15 6 chr12 3296313 3296380 -117961150 - PB1 SINE Alu -63 64 10 4 610 521 250 57 29 chr12 3296445 3296585 -117960945 - RSINE1 SINE B4 -4 161 18 4 610 293 206 82 0 chr12 3296586 3296659 -117960871 + PB1D10 SINE Alu 24 102 -15 4 610 212 143 0 23 chr12 3296660 3296703 -117960827 + GA-rich Low_complexity Low_complexity 3 44 0 4 610 319 381 0 8 chr12 3296747 3296866 -117960664 + ID_B1 SINE B4 81 198 -26 4 610 1336 90 6 0 chr12 3296914 3297091 -117960439 + B2_Mm1a SINE B2 2 179 -14 4 610 1394 57 85 0 chr12 3297344 3297503 -117960027 + B2_Mm1a SINE B2 2 160 -33 4 610 288 77 0 0 chr12 3297503 3297542 -117959988 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 610 1394 57 85 0 chr12 3297542 3297558 -117959972 + B2_Mm1a SINE B2 161 190 -3 4 610 300 68 0 0 chr12 3297722 3297766 -117959764 + B1_Mm SINE Alu 104 147 0 4 610 968 50 0 54 chr12 3297832 3297979 -117959551 - B1_Mm SINE Alu 0 147 9 4 610 673 263 6 13 chr12 3298205 3298363 -117959167 + RSINE1 SINE B4 8 164 -1 4 610 693 286 139 55 chr12 3298401 3298819 -117958711 + Lx8 LINE L1 6987 7439 -34 4 610 680 255 34 124 chr12 3298866 3298919 -117958611 + B3 SINE B2 4 47 -169 4 610 1189 61 0 0 chr12 3298919 3299066 -117958464 + B1_Mm SINE Alu 1 147 0 4 610 680 255 34 124 chr12 3299066 3299245 -117958285 + B3 SINE B2 48 215 -1 4 610 592 203 29 22 chr12 3299263 3299399 -117958131 + B1_Mur2 SINE Alu 1 137 -12 4 610 225 0 0 0 chr12 3299399 3299424 -117958106 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 4 610 603 240 89 22 chr12 3299681 3299860 -117957670 + ID_B1 SINE B4 34 224 0 4 610 355 279 57 31 chr12 3299866 3300025 -117957505 + L1MD1 LINE L1 6079 6241 -1 4 610 33 25 0 0 chr12 3300304 3300344 -117957186 + AT_rich Low_complexity Low_complexity 1 40 0 4 610 579 217 0 24 chr12 3300366 3300489 -117957041 - B3 SINE B2 -92 124 5 4 610 351 260 80 44 chr12 3300526 3300663 -117956867 - ID_B1 SINE B4 -82 142 1 4 610 485 233 7 85 chr12 3300749 3300890 -117956640 - B1F2 SINE Alu -1 148 19 4 610 1211 103 6 0 chr12 3301767 3301924 -117955606 + B2_Mm2 SINE B2 2 158 -37 4 610 243 0 0 0 chr12 3301924 3301951 -117955579 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 4 610 1211 103 6 0 chr12 3301951 3301967 -117955563 + B2_Mm2 SINE B2 159 175 -20 4 610 422 280 42 7 chr12 3302046 3302190 -117955340 - L1MB4 LINE L1 -115 6065 5917 4 610 569 248 43 0 chr12 3302224 3302365 -117955165 - B1_Mus2 SINE Alu 0 147 1 4 610 410 289 44 42 chr12 3302365 3302417 -117955113 - ID_B1 SINE B4 -63 225 25 4 610 278 222 86 126 chr12 3302417 3302672 -117954858 - L1MB4 LINE L1 -371 5818 5587 4 610 620 220 174 38 chr12 3302672 3302856 -117954674 - ID_B1 SINE B4 -13 211 3 4 610 278 297 40 81 chr12 3302856 3302873 -117954657 - L1MB4 LINE L1 -592 5586 5569 4 610 531 243 36 7 chr12 3302873 3303010 -117954520 - B1F SINE Alu -6 143 3 4 610 278 297 40 81 chr12 3303010 3303115 -117954415 - L1MB4 LINE L1 -610 5568 5477 4 610 448 207 5 17 chr12 3303230 3303338 -117954192 - PB1D10 SINE Alu -36 113 8 4 610 22 35 0 0 chr12 3303393 3303422 -117954108 + AT_rich Low_complexity Low_complexity 1 29 0 4 610 290 211 26 13 chr12 3303422 3303499 -117954031 - L1MB4 LINE L1 -765 5413 5336 4 610 419 259 70 28 chr12 3303675 3303818 -117953712 - B1F2 SINE Alu 0 149 1 4 610 396 245 112 9 chr12 3303818 3303925 -117953605 - B1F2 SINE Alu -31 118 1 4 610 266 26 53 0 chr12 3303986 3304024 -117953506 + (TATG)n Simple_repeat Simple_repeat 3 42 0 4 610 477 263 59 15 chr12 3304039 3304174 -117953356 - RSINE1 SINE B4 -21 144 4 5 610 1191 109 23 0 chr12 3304417 3304592 -117952938 + B2_Mm1t SINE B2 1 179 -14 5 610 259 117 339 52 chr12 3304637 3304752 -117952778 + B2_Mm2 SINE B2 48 195 0 5 610 735 182 14 14 chr12 3304767 3304912 -117952618 + B1_Mus2 SINE Alu 2 146 -1 5 610 849 204 109 5 chr12 3304914 3305106 -117952424 + B3 SINE B2 3 214 -2 5 610 207 0 0 0 chr12 3305114 3305137 -117952393 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 610 893 154 42 0 chr12 3305160 3305303 -117952227 + B1_Mur4 SINE Alu 2 150 0 5 610 1244 135 0 5 chr12 3305339 3305533 -117951997 + B2_Mm2 SINE B2 2 194 -1 5 610 888 253 68 0 chr12 3305724 3305973 -117951557 + B4A SINE B4 26 291 -1 5 610 228 111 71 36 chr12 3306235 3306291 -117951239 + (TTATA)n Simple_repeat Simple_repeat 2 59 0 5 610 222 188 146 0 chr12 3306348 3306396 -117951134 - PB1D7 SINE Alu -57 63 9 5 610 269 253 67 0 chr12 3307943 3308018 -117949512 + L2a LINE L2 3337 3416 -10 5 610 189 0 0 0 chr12 3310301 3310322 -117947208 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 610 229 212 154 48 chr12 3310738 3310842 -117946688 - PB1D10 SINE Alu -2 118 4 5 610 380 197 0 0 chr12 3311470 3311536 -117945994 + ID4_ SINE ID 1 66 -17 5 610 239 288 86 12 chr12 3311541 3311622 -117945908 + ID_B1 SINE B4 124 210 -14 5 610 2899 66 0 11 chr12 3311893 3312275 -117945255 - L1Md_F2 LINE L1 -3 6579 6202 5 610 274 278 29 0 chr12 3312427 3312528 -117945002 + PB1D10 SINE Alu 2 107 -42 5 610 372 289 47 53 chr12 3313165 3313188 -117944342 + ID_B1 SINE B4 66 214 -10 5 610 454 243 53 1 chr12 3313188 3313315 -117944215 + B1F2 SINE Alu 7 139 -10 5 610 352 122 253 12 chr12 3313389 3313472 -117944058 + PB1D9 SINE Alu 12 114 -6 5 610 999 76 20 27 chr12 3313571 3313720 -117943810 - B1_Mur3 SINE Alu -1 148 1 5 610 21 0 0 0 chr12 3313721 3313742 -117943788 + AT_rich Low_complexity Low_complexity 1 21 0 5 610 1275 27 0 0 chr12 3313762 3313909 -117943621 + B1_Mm SINE Alu 1 147 0 5 610 26 0 0 0 chr12 3313909 3313935 -117943595 + AT_rich Low_complexity Low_complexity 1 26 0 5 610 810 206 0 0 chr12 3314310 3314456 -117943074 + B1_Mus1 SINE Alu 3 148 0 5 610 187 133 22 22 chr12 3314458 3314504 -117943026 + GA-rich Low_complexity Low_complexity 3 48 0 5 610 772 226 32 12 chr12 3314575 3314762 -117942768 + B3A SINE B2 9 201 -15 5 610 382 316 36 29 chr12 3314993 3315133 -117942397 + RSINE1 SINE B4 23 163 -2 5 610 228 256 167 0 chr12 3315221 3315311 -117942219 + MIRb SINE MIR 94 198 -70 5 610 255 226 34 42 chr12 3315332 3315456 -117942074 - ID4 SINE ID -26 126 2 5 610 345 287 81 8 chr12 3315554 3315677 -117941853 - ID_B1 SINE B4 -7 217 86 5 610 247 403 0 0 chr12 3315707 3315779 -117941751 + RSINE1 SINE B4 3 74 -91 5 610 239 229 0 0 chr12 3315836 3315884 -117941646 + (CATG)n Simple_repeat Simple_repeat 1 48 0 5 610 309 26 0 0 chr12 3316566 3316604 -117940926 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 610 441 0 0 0 chr12 3316641 3316690 -117940840 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 610 367 321 43 29 chr12 3316701 3316839 -117940691 - RSINE1 SINE B4 -21 144 5 5 610 715 222 20 6 chr12 3317415 3317593 -117939937 + B3 SINE B2 2 192 -6 5 610 217 243 40 13 chr12 3317628 3317703 -117939827 + B4 SINE B4 1 77 -215 5 610 201 237 0 0 chr12 3317792 3317851 -117939679 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 610 390 205 0 0 chr12 3317850 3317933 -117939597 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 610 293 279 12 12 chr12 3318127 3318207 -117939323 + ID2 SINE ID 2 81 -2 5 610 532 313 5 16 chr12 3318453 3318638 -117938892 + B3A SINE B2 1 183 -15 5 610 704 188 80 0 chr12 3318712 3318850 -117938680 + B1_Mur4 SINE Alu 1 149 -1 5 610 982 140 0 17 chr12 3318864 3319045 -117938485 + GA-rich Low_complexity Low_complexity 3 180 0 5 610 258 32 0 0 chr12 3319045 3319076 -117938454 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 5 610 727 221 15 0 chr12 3319078 3319209 -117938321 + B1_Mur1 SINE Alu 1 133 -16 5 610 558 0 0 0 chr12 3319211 3319273 -117938257 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 5 610 477 80 34 0 chr12 3319290 3319378 -117938152 + (CATA)n Simple_repeat Simple_repeat 4 94 0 5 610 657 163 21 28 chr12 3319839 3319984 -117937546 + URR1B DNA MER1_type 82 225 0 5 610 689 135 36 0 chr12 3320005 3320116 -117937414 + PB1D9 SINE Alu 1 115 -5 5 610 368 118 125 50 chr12 3320117 3320197 -117937333 + B1_Mur4 SINE Alu 44 129 -21 5 610 297 75 0 0 chr12 3320203 3320243 -117937287 + (GGA)n Simple_repeat Simple_repeat 3 42 0 5 610 1392 56 0 0 chr12 3320243 3320421 -117937109 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 5 610 344 317 309 25 chr12 3320497 3320698 -117936832 + B4 SINE B4 34 291 -1 5 610 1038 100 0 0 chr12 3320829 3321009 -117936521 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 610 1161 78 0 0 chr12 3321027 3321206 -117936324 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 610 1194 78 0 0 chr12 3321219 3321566 -117935964 + (TG)n Simple_repeat Simple_repeat 1 347 0 5 610 236 189 0 0 chr12 3321680 3321733 -117935797 + T-rich Low_complexity Low_complexity 2 54 0 5 610 424 0 36 0 chr12 3321875 3321931 -117935599 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 610 225 228 99 25 chr12 3322200 3322281 -117935249 + L1M4 LINE L1 4882 4968 -1178 5 610 315 0 0 0 chr12 3322496 3322531 -117934999 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 610 414 0 0 0 chr12 3322531 3322576 -117934954 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 610 254 193 35 0 chr12 3322580 3322637 -117934893 - B1F2 SINE Alu -47 102 44 5 610 211 93 23 23 chr12 3322746 3322790 -117934740 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 5 610 712 239 141 5 chr12 3322808 3322841 -117934689 - B3 SINE B2 -6 210 177 5 610 717 12 0 0 chr12 3322841 3322923 -117934607 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 5 610 712 239 141 5 chr12 3322923 3323074 -117934456 - B3 SINE B2 -40 176 2 5 610 197 65 0 31 chr12 3323098 3323130 -117934400 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 5 610 254 342 105 0 chr12 3323665 3323779 -117933751 - L2b LINE L2 -12 3363 3238 5 610 354 45 0 0 chr12 3323780 3323824 -117933706 + (CAAT)n Simple_repeat Simple_repeat 1 44 0 5 610 219 186 0 0 chr12 3323996 3324039 -117933491 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 610 407 323 24 0 chr12 3324228 3324392 -117933138 + (CA)n Simple_repeat Simple_repeat 1 168 0 5 610 300 224 0 0 chr12 3324451 3324509 -117933021 + PB1D10 SINE Alu 52 109 -8 5 610 350 260 52 0 chr12 3324530 3324607 -117932923 + RSINE1 SINE B4 13 93 -72 5 610 397 195 37 132 chr12 3324668 3324804 -117932726 - B1F SINE Alu -25 124 2 5 610 721 259 104 40 chr12 3324843 3325092 -117932438 - B4A SINE B4 -15 277 13 5 610 258 307 65 43 chr12 3325157 3325249 -117932281 + PB1D10 SINE Alu 10 103 -14 5 610 441 240 18 91 chr12 3325253 3325418 -117932112 + ID_B1 SINE B4 66 218 -6 5 610 541 269 0 22 chr12 3325775 3325912 -117931618 + ID_B1 SINE B4 78 211 -13 5 610 653 250 123 20 chr12 3325976 3326257 -117931273 + ID_B1 SINE B4 5 292 0 5 610 200 79 0 50 chr12 3326336 3326376 -117931154 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 5 610 348 224 184 0 chr12 3326673 3326771 -117930759 - MTEa LTR MaLR -2 377 262 5 610 477 50 0 0 chr12 3326783 3326843 -117930687 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 610 888 112 67 0 chr12 3326843 3326977 -117930553 - B1_Mur4 SINE Alu -6 144 2 5 610 273 125 0 0 chr12 3326994 3327050 -117930480 + (T)n Simple_repeat Simple_repeat 1 56 0 5 610 1135 36 50 0 chr12 3327053 3327193 -117930337 - B1_Mm SINE Alu 0 147 1 5 610 28 0 0 0 chr12 3327453 3327481 -117930049 + AT_rich Low_complexity Low_complexity 1 28 0 5 610 1155 76 0 0 chr12 3327482 3327626 -117929904 + B1_Mm SINE Alu 2 145 -2 5 610 591 144 7 13 chr12 3327626 3327781 -117929749 + (TA)n Simple_repeat Simple_repeat 1 154 0 5 610 614 257 118 0 chr12 3327796 3327983 -117929547 - B3 SINE B2 0 216 8 5 610 415 238 82 3 chr12 3328091 3328230 -117929300 + MTEb LTR MaLR 219 379 0 5 610 575 131 43 18 chr12 3328239 3328402 -117929128 + (TG)n Simple_repeat Simple_repeat 2 168 0 5 610 203 88 0 29 chr12 3328410 3328445 -117929085 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 5 610 518 184 28 11 chr12 3328467 3328643 -117928887 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 610 308 227 20 40 chr12 3328900 3329001 -117928529 - MTE2a LTR MaLR -2 377 279 5 610 260 123 13 40 chr12 3329548 3329624 -117927906 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 610 383 284 110 0 chr12 3330155 3330282 -117927248 + ID_B1 SINE B4 82 222 -2 5 610 2940 27 0 3 chr12 3330821 3331159 -117926371 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 610 50029 18 7 4 chr12 3331159 3337599 -117919931 - IAPEz-int LTR ERVK 0 6481 8 5 610 2958 27 0 3 chr12 3337599 3337937 -117919593 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 610 415 282 84 0 chr12 3338030 3338161 -117919369 + B1F1 SINE Alu 1 142 -7 5 610 562 321 59 83 chr12 3338192 3338481 -117919049 + B4A SINE B4 7 288 -4 5 610 550 0 29 0 chr12 3338514 3338584 -117918946 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 610 994 104 14 14 chr12 3338743 3338889 -117918641 + B1_Mus1 SINE Alu 2 147 -1 5 610 375 148 0 0 chr12 3338931 3339019 -117918511 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 610 306 0 0 0 chr12 3339226 3339260 -117918270 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 610 673 286 75 10 chr12 3339659 3339860 -117917670 + MLT1K LTR MaLR 382 595 0 6 610 1020 262 44 65 chr12 3340191 3340578 -117916952 + MTE2b LTR MaLR 1 379 0 6 610 1176 69 0 0 chr12 3340631 3340776 -117916754 + B1_Mus2 SINE Alu 2 146 -1 6 610 559 323 6 18 chr12 3340795 3340962 -117916568 + RSINE1 SINE B4 1 165 0 6 610 813 178 0 0 chr12 3340962 3341238 -117916292 + (CA)n Simple_repeat Simple_repeat 1 276 0 6 610 210 91 0 0 chr12 3341262 3341295 -117916235 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 610 343 279 10 61 chr12 3341415 3341514 -117916016 + ID_B1 SINE B4 102 195 -29 6 610 224 269 139 61 chr12 3341514 3341530 -117916000 + B1_Mus1 SINE Alu 22 145 -3 6 610 589 254 108 5 chr12 3341530 3341724 -117915806 + B3 SINE B2 3 216 0 6 610 649 239 83 136 chr12 3341751 3341899 -117915631 + ID_B1 SINE B4 6 137 -87 6 610 938 112 0 43 chr12 3341899 3342039 -117915491 + B1_Mus1 SINE Alu 2 135 -13 6 610 649 239 83 136 chr12 3342039 3342118 -117915412 + ID_B1 SINE B4 138 221 -3 6 610 1050 213 23 23 chr12 3342142 3342358 -117915172 + ID_B1 SINE B4 8 223 -1 6 610 396 0 0 0 chr12 3342400 3342444 -117915086 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 6 610 537 99 0 0 chr12 3342444 3342525 -117915005 + (GGGA)n Simple_repeat Simple_repeat 3 83 0 6 610 222 37 0 0 chr12 3342614 3342641 -117914889 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 610 898 220 68 0 chr12 3342783 3342974 -117914556 - B3 SINE B2 -12 204 1 6 610 438 248 139 0 chr12 3343354 3343483 -117914047 - RSINE1 SINE B4 -17 148 2 6 610 237 260 38 25 chr12 3343715 3343794 -117913736 + Lx6 LINE L1 7245 7324 -136 6 610 608 163 171 0 chr12 3343829 3343952 -117913578 - B1_Mur4 SINE Alu -2 148 5 6 610 238 269 0 82 chr12 3344147 3344220 -117913310 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 6 610 200 294 29 0 chr12 3344599 3344667 -117912863 + CT-rich Low_complexity Low_complexity 3 72 0 6 610 1060 53 8 0 chr12 3344681 3344814 -117912716 - B1_Mus1 SINE Alu -12 136 3 6 610 725 279 24 14 chr12 3344943 3345150 -117912380 + B3 SINE B2 1 209 -7 6 610 1665 262 104 27 chr12 3345184 3345768 -117911762 + Lx7 LINE L1 6674 7302 -394 6 610 192 77 0 0 chr12 3345819 3345845 -117911685 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 610 664 115 0 17 chr12 3345866 3345964 -117911566 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 6 610 1187 61 0 7 chr12 3345964 3346113 -117911417 - B1_Mus1 SINE Alu 0 148 1 6 610 664 115 0 17 chr12 3346113 3346129 -117911401 + (TTTC)n Simple_repeat Simple_repeat 2 16 0 6 610 982 112 0 14 chr12 3346199 3346344 -117911186 - B2_Mm2 SINE B2 -38 157 15 6 610 1123 84 118 18 chr12 3346356 3346525 -117911005 - B2_Mm1a SINE B2 -6 187 2 6 610 621 157 161 23 chr12 3346799 3346929 -117910601 + B1_Mus1 SINE Alu 1 148 0 6 610 224 30 30 0 chr12 3346931 3346964 -117910566 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 610 1266 122 11 0 chr12 3346971 3347160 -117910370 + B2_Mm1a SINE B2 2 192 -1 6 610 231 169 34 0 chr12 3347167 3347226 -117910304 + (CAAA)n Simple_repeat Simple_repeat 3 63 0 6 610 494 281 56 56 chr12 3347235 3347397 -117910133 + ID_B1 SINE B4 1 162 -62 6 610 264 261 55 33 chr12 3347328 3347419 -117910111 + PB1D10 SINE Alu 9 101 -16 6 610 259 306 0 53 chr12 3347615 3347691 -117909839 + B4 SINE B4 81 152 -140 6 610 475 210 130 0 chr12 3347624 3347724 -117909806 + PB1D10 SINE Alu 5 117 0 6 610 221 125 292 0 chr12 3347762 3347810 -117909720 + PB1D9 SINE Alu 59 120 0 6 610 357 82 0 0 chr12 3347810 3347859 -117909671 + (A)n Simple_repeat Simple_repeat 1 49 0 6 610 341 352 54 15 chr12 3347972 3348102 -117909428 + RSINE1 SINE B4 29 163 -2 6 610 692 147 0 23 chr12 3348116 3348185 -117909345 + polypurine Low_complexity Low_complexity 2 69 0 6 610 1233 96 0 0 chr12 3348185 3348363 -117909167 + (GGA)n Simple_repeat Simple_repeat 2 179 0 6 610 1229 108 27 11 chr12 3348363 3348550 -117908980 + B2_Mm1t SINE B2 4 193 0 6 610 692 147 0 23 chr12 3348550 3348611 -117908919 + polypurine Low_complexity Low_complexity 70 129 0 6 610 306 309 0 14 chr12 3348633 3348702 -117908828 + ID SINE ID 5 72 -152 6 610 299 113 0 19 chr12 3348702 3348756 -117908774 + (CATA)n Simple_repeat Simple_repeat 4 56 0 6 610 1159 209 0 41 chr12 3348756 3349000 -117908530 - RLTR11A LTR ERVK 0 528 295 6 610 596 188 7 0 chr12 3349005 3349143 -117908387 + (CATA)n Simple_repeat Simple_repeat 4 142 0 6 610 364 198 66 13 chr12 3349162 3349253 -117908277 + B1F SINE Alu 50 144 -5 6 610 1163 43 7 0 chr12 3349286 3349426 -117908104 + B1_Mus1 SINE Alu 5 145 -3 6 610 576 0 0 0 chr12 3349426 3349490 -117908040 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 610 192 286 170 9 chr12 3349700 3349806 -117907724 + MIR3 SINE MIR 15 137 -71 6 610 752 159 16 23 chr12 3349887 3350016 -117907514 - B1_Mur3 SINE Alu -21 128 1 6 610 380 243 8 75 chr12 3349914 3350034 -117907496 - MT2B LTR ERVL -344 257 146 6 610 261 256 83 121 chr12 3350048 3350288 -117907242 - MIRc SINE MIR -26 242 12 6 610 423 226 0 0 chr12 3350619 3350703 -117906827 - ID_B1 SINE B4 0 224 141 6 610 281 229 50 40 chr12 3350620 3350720 -117906810 - B1F2 SINE Alu 0 149 49 6 610 522 245 120 52 chr12 3350720 3350894 -117906636 - ID_B1 SINE B4 -35 257 81 6 610 759 210 0 34 chr12 3350900 3351048 -117906482 - B1_Mur1 SINE Alu -4 145 3 6 610 324 265 59 30 chr12 3351065 3351166 -117906364 - PB1D10 SINE Alu 0 117 14 6 610 1600 186 182 9 chr12 3351403 3351750 -117905780 + MTC LTR MaLR 15 421 0 6 610 564 260 93 0 chr12 3351786 3351936 -117905594 + ID_B1 SINE B4 1 164 -60 6 610 298 250 56 74 chr12 3351867 3351975 -117905555 + PB1D10 SINE Alu 12 117 0 6 610 1185 55 7 7 chr12 3351984 3352132 -117905398 + B1_Mus1 SINE Alu 1 148 0 6 610 1408 65 54 0 chr12 3352741 3352926 -117904604 - B2_Mm2 SINE B2 0 195 1 6 610 403 267 0 90 chr12 3353017 3353128 -117904402 + PB1D10 SINE Alu 13 113 -4 6 610 502 102 71 12 chr12 3353134 3353303 -117904227 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 610 828 215 0 14 chr12 3353403 3353549 -117903981 - B1F2 SINE Alu 0 149 6 6 610 950 290 42 15 chr12 3353612 3353659 -117903871 - B4 SINE B4 -22 270 218 6 610 450 0 0 0 chr12 3353659 3353709 -117903821 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 6 610 950 290 42 15 chr12 3353709 3353924 -117903606 - B4 SINE B4 -75 217 2 6 610 571 310 69 30 chr12 3353924 3354120 -117903410 + MLT1A0 LTR MaLR 139 342 -23 6 610 1206 54 0 0 chr12 3354144 3354291 -117903239 - B1_Mus1 SINE Alu 0 148 2 6 610 531 0 0 0 chr12 3354361 3354420 -117903110 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6 610 225 270 54 0 chr12 3354605 3354679 -117902851 - L2a LINE L2 -2 3424 3347 6 610 613 241 8 8 chr12 3354744 3354878 -117902652 + ID_B1 SINE B4 88 221 -3 6 610 260 324 35 41 chr12 3355148 3355293 -117902237 - L2a LINE L2 -479 2940 2797 6 610 211 281 56 92 chr12 3355388 3355584 -117901946 - L2a LINE L2 -662 2757 2569 6 610 408 306 104 7 chr12 3355658 3355793 -117901737 + RSINE1 SINE B4 18 165 0 6 610 389 259 0 11 chr12 3355804 3355984 -117901546 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 610 469 219 0 43 chr12 3356012 3356198 -117901332 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 610 363 233 67 0 chr12 3356204 3356294 -117901236 + ID_B1 SINE B4 129 224 0 6 610 641 153 47 31 chr12 3356312 3356440 -117901090 + B1_Mur2 SINE Alu 19 148 -1 6 610 216 0 0 0 chr12 3356465 3356489 -117901041 + (A)n Simple_repeat Simple_repeat 1 24 0 6 610 360 281 113 49 chr12 3356690 3356832 -117900698 + B3A SINE B2 47 197 -1 6 610 1063 115 20 4 chr12 3357146 3357632 -117899898 + (TG)n Simple_repeat Simple_repeat 1 493 0 6 610 365 319 25 0 chr12 3357695 3357814 -117899716 - B4A SINE B4 -170 122 1 6 610 655 277 79 5 chr12 3357820 3358023 -117899507 - ID_B1 SINE B4 -6 218 1 6 610 284 291 25 0 chr12 3358063 3358142 -117899388 + ID4_ SINE ID 1 81 -2 6 610 1035 122 0 0 chr12 3358181 3358320 -117899210 + B1_Mur3 SINE Alu 5 143 -6 6 610 315 0 0 0 chr12 3358324 3358359 -117899171 + (CAAT)n Simple_repeat Simple_repeat 1 35 0 6 610 429 274 145 0 chr12 3358366 3358483 -117899047 + ID_B1 SINE B4 91 224 0 6 610 26 0 0 0 chr12 3358489 3358515 -117899015 + AT_rich Low_complexity Low_complexity 1 26 0 6 610 284 222 135 27 chr12 3358624 3358648 -117898882 + B1F SINE Alu 27 149 0 6 610 376 230 58 0 chr12 3358648 3358735 -117898795 + ID_B1 SINE B4 131 222 -2 6 610 431 308 22 8 chr12 3358791 3358925 -117898605 + B1F1 SINE Alu 12 147 -2 6 610 821 230 72 20 chr12 3358953 3359148 -117898382 + B3 SINE B2 5 209 -7 6 610 305 241 19 0 chr12 3359564 3359618 -117897912 + B1F1 SINE Alu 1 55 -94 6 610 26 30 0 0 chr12 3359745 3359778 -117897752 + AT_rich Low_complexity Low_complexity 1 33 0 6 610 329 249 43 134 chr12 3359803 3359989 -117897541 + B4A SINE B4 56 224 -68 6 610 860 145 0 8 chr12 3359858 3359990 -117897540 + B1_Mur4 SINE Alu 19 149 -1 6 610 295 284 0 12 chr12 3360361 3360443 -117897087 + ID_B1 SINE B4 144 224 0 6 610 484 96 27 27 chr12 3360370 3360445 -117897085 + B1_Mur3 SINE Alu 75 149 0 7 610 241 176 39 0 chr12 3360590 3360641 -117896889 + MTEa LTR MaLR 60 112 -267 7 610 214 300 103 35 chr12 3360692 3360837 -117896693 - L2c LINE L2 -260 3127 2973 7 610 1114 59 0 0 chr12 3360856 3360991 -117896539 + B1_Mus2 SINE Alu 1 135 -12 7 610 751 194 219 17 chr12 3361047 3361225 -117896305 + B3 SINE B2 1 214 -2 7 610 425 312 34 54 chr12 3361298 3361447 -117896083 - B1F SINE Alu -1 148 3 7 610 799 276 26 5 chr12 3361447 3361526 -117896004 - ID SINE ID -140 84 2 7 610 329 234 53 61 chr12 3362110 3362224 -117895306 - ID_B1 SINE B4 0 224 112 7 610 684 164 129 30 chr12 3362310 3362442 -117895088 + B1_Mur3 SINE Alu 5 149 0 7 610 21 0 0 0 chr12 3362505 3362526 -117895004 + AT_rich Low_complexity Low_complexity 1 21 0 7 610 531 258 208 0 chr12 3362531 3362709 -117894821 - B3 SINE B2 0 216 2 7 610 244 311 127 30 chr12 3362800 3362966 -117894564 + B4 SINE B4 42 223 -69 7 610 1054 223 5 14 chr12 3363008 3363217 -117894313 + B3 SINE B2 5 211 -5 7 610 594 140 97 0 chr12 3363225 3363318 -117894212 - B1_Mus1 SINE Alu -23 125 24 7 610 299 169 125 38 chr12 3363247 3363327 -117894203 - MT2B LTR ERVL -344 257 171 7 610 210 347 14 0 chr12 3363369 3363441 -117894089 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 610 1122 116 40 6 chr12 3363560 3363733 -117893797 + B2_Mm1t SINE B2 1 179 -14 7 610 286 116 371 31 chr12 3363783 3363880 -117893650 + B2_Mm2 SINE B2 47 176 -19 7 610 1427 87 11 0 chr12 3363880 3364065 -117893465 - B2_Mm2 SINE B2 -7 188 2 7 610 1283 216 173 19 chr12 3364079 3364438 -117893092 - MTD LTR MaLR -5 414 1 7 610 22 0 0 0 chr12 3365271 3365293 -117892237 + GC_rich Low_complexity Low_complexity 1 22 0 7 610 395 285 74 27 chr12 3367913 3368061 -117889469 - MIRc SINE MIR -1 267 113 7 610 750 230 4 96 chr12 3368641 3368881 -117888649 - ID_B1 SINE B4 -3 221 4 7 610 385 328 44 9 chr12 3369529 3369643 -117887887 + PB1 SINE Alu 7 124 -3 7 610 357 24 0 0 chr12 3369922 3369964 -117887566 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 610 709 251 57 23 chr12 3370105 3370280 -117887250 - B3 SINE B2 -6 210 30 7 610 876 178 27 0 chr12 3370345 3370491 -117887039 - B1_Mur4 SINE Alu 0 150 1 7 610 327 281 95 23 chr12 3370512 3370667 -117886863 - MIRc SINE MIR -80 188 19 7 610 193 315 20 95 chr12 3370652 3370799 -117886731 + MIRm SINE MIR 54 198 -70 7 610 258 203 33 17 chr12 3371056 3371116 -117886414 + MIRc SINE MIR 144 204 -64 7 610 321 309 9 9 chr12 3372418 3372526 -117885004 - BC1_Mm scRNA scRNA -42 110 3 7 610 267 260 13 52 chr12 3372551 3372628 -117884902 - ID4_ SINE ID -2 81 8 7 610 354 351 22 15 chr12 3372674 3372810 -117884720 - B1F SINE Alu -1 148 12 7 610 857 246 59 5 chr12 3372840 3373044 -117884486 - B3 SINE B2 0 216 2 7 610 342 0 0 0 chr12 3373051 3373089 -117884441 + (TTA)n Simple_repeat Simple_repeat 1 38 0 7 610 389 330 0 0 chr12 3373090 3373184 -117884346 - PB1D10 SINE Alu -20 97 4 7 610 334 376 15 8 chr12 3373184 3373226 -117884304 - ID SINE ID -140 84 42 7 610 1030 196 36 32 chr12 3373231 3373452 -117884078 + ID_B1 SINE B4 2 223 -1 7 610 335 203 0 0 chr12 3373477 3373546 -117883984 + L1MA10 LINE L1 6222 6290 -44 7 610 242 304 60 0 chr12 3374104 3374175 -117883355 + BC1_Mm scRNA scRNA 5 79 -73 7 610 842 214 122 0 chr12 3374183 3374379 -117883151 - ID_B1 SINE B4 0 224 5 7 610 281 231 50 25 chr12 3374395 3374475 -117883055 - PB1D10 SINE Alu 0 117 36 7 610 1203 61 7 0 chr12 3374977 3375124 -117882406 - B1_Mus1 SINE Alu 0 148 1 7 610 900 164 0 14 chr12 3375447 3375595 -117881935 + B1_Mus1 SINE Alu 3 148 0 7 610 309 317 57 88 chr12 3375454 3375613 -117881917 + B4A SINE B4 94 247 -45 7 610 338 266 106 0 chr12 3375630 3375724 -117881806 - B1F SINE Alu -5 144 41 7 610 449 245 90 20 chr12 3375908 3376008 -117881522 - B1F SINE Alu -3 146 40 7 610 1156 68 0 0 chr12 3376070 3376216 -117881314 + B1_Mus1 SINE Alu 2 147 -1 7 610 1201 61 0 0 chr12 3376229 3376376 -117881154 + B1_Mus2 SINE Alu 1 147 0 7 610 341 276 108 11 chr12 3376486 3376592 -117880938 - PB1D10 SINE Alu -1 116 1 7 610 28 29 0 0 chr12 3376606 3376641 -117880889 + AT_rich Low_complexity Low_complexity 1 35 0 7 610 785 153 28 22 chr12 3376792 3376968 -117880562 - B3 SINE B2 0 198 9 7 610 243 0 0 0 chr12 3377073 3377100 -117880430 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 610 592 258 59 8 chr12 3377107 3377259 -117880271 + ID_B1 SINE B4 70 224 0 7 610 282 197 62 153 chr12 3377339 3377483 -117880047 + B3 SINE B2 60 190 -5 7 610 355 258 11 0 chr12 3377492 3377581 -117879949 + ID_B1 SINE B4 135 224 0 7 610 205 179 0 0 chr12 3377671 3377710 -117879820 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 610 302 214 258 0 chr12 3378270 3378359 -117879171 - PB1D9 SINE Alu -7 113 2 7 610 358 101 333 9 chr12 3378876 3378984 -117878546 - B2_Mm2 SINE B2 -6 189 47 7 610 1123 85 85 0 chr12 3379035 3379199 -117878331 - B2_Mm1t SINE B2 -14 179 2 7 610 836 168 0 14 chr12 3379322 3379461 -117878069 - B1_Mus2 SINE Alu -2 145 9 7 610 572 289 45 58 chr12 3379461 3379546 -117877984 - ID_B1 SINE B4 0 224 4 7 610 193 273 200 0 chr12 3379637 3379747 -117877783 - MIRm SINE MIR -123 153 22 7 610 249 301 184 22 chr12 3380018 3380172 -117877358 + MIRc SINE MIR 15 183 -79 7 610 336 237 13 26 chr12 3380228 3380306 -117877224 + RSINE1 SINE B4 61 137 -28 7 610 1185 62 0 0 chr12 3380394 3380540 -117876990 - B1_Mus2 SINE Alu 0 147 2 7 610 432 0 0 0 chr12 3380640 3380688 -117876842 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 610 359 273 89 20 chr12 3380698 3380799 -117876731 - ID_B1 SINE B4 -116 108 1 7 610 456 200 23 12 chr12 3380829 3380915 -117876615 - PB1D10 SINE Alu -21 96 10 7 610 207 0 0 0 chr12 3381912 3381935 -117875595 + (T)n Simple_repeat Simple_repeat 1 23 0 7 610 1165 69 14 0 chr12 3381935 3382080 -117875450 - B1_Mus2 SINE Alu 0 147 1 7 610 415 233 38 56 chr12 3382411 3382538 -117874992 + B1F SINE Alu 1 149 0 7 610 752 134 0 0 chr12 3382537 3382649 -117874881 + B1_Mur4 SINE Alu 1 112 -38 7 610 365 300 47 66 chr12 3382758 3383015 -117874515 - CR1_Mam LINE CR1 -295 1909 1658 7 610 627 121 0 0 chr12 3383040 3383139 -117874391 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 7 610 853 106 161 0 chr12 3383245 3383406 -117874124 - B2_Mm2 SINE B2 -6 189 3 7 610 533 170 69 35 chr12 3383406 3383522 -117874008 - PB1D9 SINE Alu 0 120 1 7 610 315 277 65 33 chr12 3383665 3383818 -117873712 - CR1_Mam LINE CR1 -919 1285 1128 7 610 345 47 0 0 chr12 3383874 3383917 -117873613 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 610 383 261 135 68 chr12 3383919 3384067 -117873463 - B4A SINE B4 -18 274 117 7 610 238 214 0 0 chr12 3384162 3384204 -117873326 + MER5B DNA MER1_type 136 177 -1 7 610 247 293 120 10 chr12 3384522 3384622 -117872908 - L2b LINE L2 -7 3368 3258 7 610 243 0 0 0 chr12 3385778 3385805 -117871725 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 610 290 250 0 0 chr12 3386557 3386609 -117870921 + ID_B1 SINE B4 117 168 -56 7 610 447 92 0 0 chr12 3386619 3386684 -117870846 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 7 610 485 127 0 0 chr12 3386704 3386775 -117870755 - B1_Mur3 SINE Alu -5 144 74 7 610 256 0 0 71 chr12 3386775 3386817 -117870713 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 610 997 26 0 0 chr12 3386817 3386934 -117870596 - B1_Mus1 SINE Alu -10 138 22 7 610 460 205 0 24 chr12 3386930 3387015 -117870515 - B1_Mur3 SINE Alu -66 83 1 7 610 745 246 0 0 chr12 3387036 3387178 -117870352 + B1F1 SINE Alu 6 147 -2 7 610 777 178 13 20 chr12 3387185 3387334 -117870196 + B1_Mur3 SINE Alu 2 149 0 7 610 749 191 0 33 chr12 3388893 3389045 -117868485 - B1_Mus1 SINE Alu 0 148 2 7 610 184 291 0 85 chr12 3389096 3389135 -117868395 + MIR3 SINE MIR 113 150 -58 7 610 1202 86 35 70 chr12 3389135 3389336 -117868194 + B2_Mm2 SINE B2 2 195 0 7 610 184 291 0 85 chr12 3389336 3389390 -117868140 + MIR3 SINE MIR 151 198 -10 7 610 288 0 0 0 chr12 3389892 3389924 -117867606 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 610 299 237 25 38 chr12 3389924 3390003 -117867527 - PB1D7 SINE Alu -13 107 30 7 610 277 135 96 0 chr12 3390114 3390166 -117867364 - B4A SINE B4 -72 220 164 7 610 222 37 0 0 chr12 3390385 3390412 -117867118 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 7 610 626 210 49 28 chr12 3391320 3391462 -117866068 + B1_Mur1 SINE Alu 4 148 -1 7 610 530 224 0 64 chr12 3391665 3391824 -117865706 - B1F SINE Alu 0 149 1 7 610 29 47 0 0 chr12 3391911 3391954 -117865576 + AT_rich Low_complexity Low_complexity 1 43 0 7 610 410 237 51 26 chr12 3392009 3392126 -117865404 - RSINE1 SINE B4 0 165 46 7 610 864 116 0 17 chr12 3392146 3392321 -117865209 + (TG)n Simple_repeat Simple_repeat 1 172 0 8 610 436 180 0 16 chr12 3392340 3392464 -117865066 + (TG)n Simple_repeat Simple_repeat 1 122 0 8 610 493 235 14 64 chr12 3392466 3392607 -117864923 - ID_B1 SINE B4 -9 215 82 8 610 382 182 102 0 chr12 3392605 3392693 -117864837 - PB1D10 SINE Alu -10 107 11 8 610 24 0 0 0 chr12 3392713 3392737 -117864793 + AT_rich Low_complexity Low_complexity 1 24 0 8 610 585 240 181 16 chr12 3392751 3392933 -117864597 - B3 SINE B2 -4 212 1 8 610 1148 68 7 0 chr12 3393778 3393924 -117863606 + B1_Mus2 SINE Alu 1 147 0 8 610 234 164 0 0 chr12 3393925 3393980 -117863550 + A-rich Low_complexity Low_complexity 1 55 0 8 610 394 324 0 0 chr12 3393996 3394104 -117863426 - PB1 SINE Alu -19 108 1 8 610 240 35 0 0 chr12 3394120 3394149 -117863381 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 8 610 352 250 83 41 chr12 3394157 3394278 -117863252 - B1F1 SINE Alu -21 128 3 8 610 610 295 6 0 chr12 3394364 3394530 -117863000 - ID_B1 SINE B4 -57 167 1 8 610 489 263 66 119 chr12 3394531 3394682 -117862848 - ID_B1 SINE B4 -64 228 82 8 610 636 199 30 0 chr12 3394795 3394926 -117862604 + B1F SINE Alu 9 143 -6 8 610 420 296 30 0 chr12 3394949 3395081 -117862449 + RSINE1 SINE B4 8 143 -22 8 610 848 155 49 0 chr12 3395126 3395268 -117862262 + B1_Mur4 SINE Alu 2 150 0 8 610 522 241 0 26 chr12 3395495 3395611 -117861919 + B3A SINE B2 1 112 -86 8 610 522 0 0 0 chr12 3395611 3395669 -117861861 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 610 416 271 0 78 chr12 3395669 3395680 -117861850 + B3 SINE B2 109 118 -98 8 610 658 267 71 15 chr12 3395758 3395956 -117861574 - B3 SINE B2 -7 209 1 8 610 277 207 218 90 chr12 3395968 3396101 -117861429 - ID_B1 SINE B4 -8 216 67 8 610 544 246 16 24 chr12 3396722 3396847 -117860683 - ID_B1 SINE B4 -100 124 1 8 610 189 265 45 125 chr12 3397265 3397377 -117860153 + MIRc SINE MIR 39 141 -127 8 610 878 260 96 0 chr12 3397691 3397899 -117859631 + B4A SINE B4 2 229 -63 8 610 1739 111 58 17 chr12 3397905 3398198 -117859332 - MTC LTR MaLR -9 412 108 8 610 1021 80 73 0 chr12 3398199 3398336 -117859194 + B1_Mus2 SINE Alu 1 147 0 8 610 1108 112 0 0 chr12 3398375 3398535 -117858995 - B2_Mm2 SINE B2 -34 161 2 8 610 328 244 8 138 chr12 3398654 3398784 -117858746 + B1F SINE Alu 5 117 0 8 610 267 303 11 11 chr12 3398787 3398877 -117858653 + PB1D10 SINE Alu 2 91 -26 8 610 586 343 28 14 chr12 3398923 3399136 -117858394 + ID_B1 SINE B4 8 223 -1 8 610 790 173 57 14 chr12 3399192 3399333 -117858197 - B1_Mus1 SINE Alu -1 147 1 8 610 412 227 0 52 chr12 3399352 3399468 -117858062 - B3 SINE B2 -7 209 100 8 610 467 252 151 0 chr12 3399530 3399649 -117857881 - B1_Mur1 SINE Alu -2 147 11 8 610 1099 82 0 26 chr12 3399649 3399800 -117857730 + B1_Mus1 SINE Alu 2 148 0 8 610 849 225 63 11 chr12 3399842 3400031 -117857499 - B3 SINE B2 -4 212 14 8 610 477 294 82 7 chr12 3400036 3400183 -117857347 - B4A SINE B4 -65 227 70 8 610 260 342 0 0 chr12 3400252 3400331 -117857199 - ID4_ SINE ID -3 80 2 8 610 218 236 54 18 chr12 3400361 3400417 -117857113 - PB1D10 SINE Alu -9 108 51 8 610 207 194 0 0 chr12 3400502 3400538 -117856992 + (TATG)n Simple_repeat Simple_repeat 4 39 0 8 610 353 235 24 12 chr12 3400593 3400675 -117856855 - B4 SINE B4 -5 287 205 8 610 1144 75 7 0 chr12 3400790 3400937 -117856593 - B1_Mus1 SINE Alu 0 148 1 8 610 1757 128 184 6 chr12 3400945 3401266 -117856264 - ORR1C1 LTR MaLR 0 378 1 8 610 521 248 41 0 chr12 3401503 3401624 -117855906 + ID_B1 SINE B4 91 216 -8 8 610 283 281 63 106 chr12 3401867 3402169 -117855361 + RLTR11B LTR ERVK 3 291 -162 8 610 218 136 23 0 chr12 3402934 3402978 -117854552 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 610 719 223 85 11 chr12 3404118 3404295 -117853235 - B3A SINE B2 0 198 9 8 610 372 287 31 47 chr12 3404320 3404448 -117853082 - B1F1 SINE Alu -21 128 3 8 610 516 233 168 7 chr12 3404592 3404777 -117852753 + B3A SINE B2 4 216 0 8 610 473 245 0 0 chr12 3404801 3404895 -117852635 + ID_B1 SINE B4 82 175 -49 8 610 22 0 0 0 chr12 3404902 3404924 -117852606 + AT_rich Low_complexity Low_complexity 1 22 0 8 610 645 194 20 27 chr12 3405049 3405197 -117852333 - B1F2 SINE Alu -1 148 2 8 610 226 153 16 63 chr12 3406283 3406346 -117851184 + (TA)n Simple_repeat Simple_repeat 1 60 0 8 610 566 264 25 19 chr12 3406745 3406907 -117850623 + RSINE1 SINE B4 3 165 0 8 610 315 243 204 7 chr12 3406960 3407097 -117850433 + B4A SINE B4 8 171 -121 8 610 477 190 216 0 chr12 3407185 3407301 -117850229 - RSINE1 SINE B4 -21 144 4 8 611 1037 223 112 49 chr12 3407957 3408149 -117849381 + RMER4B LTR ERVK 17 198 -387 8 611 1538 67 0 5 chr12 3408149 3408343 -117849187 - B2_Mm2 SINE B2 0 195 3 8 611 1037 218 120 54 chr12 3408343 3408651 -117848879 + RMER4B LTR ERVK 199 585 0 8 611 940 227 96 60 chr12 3408652 3409036 -117848494 - RMER10A LTR ERVL -24 418 21 8 611 212 226 0 19 chr12 3409498 3409552 -117847978 + BC1_Mm scRNA scRNA 46 98 -54 8 611 589 290 48 0 chr12 3409630 3409775 -117847755 - RSINE1 SINE B4 0 165 14 8 611 640 236 102 43 chr12 3409800 3409814 -117847716 - B3A SINE B2 -1 197 186 8 611 243 0 0 0 chr12 3409814 3409841 -117847689 + (TATG)n Simple_repeat Simple_repeat 1 27 0 8 611 640 236 102 43 chr12 3409841 3410012 -117847518 - B3A SINE B2 -13 185 1 8 611 943 49 0 0 chr12 3410074 3410196 -117847334 + B1_Mm SINE Alu 26 147 0 8 611 453 312 21 14 chr12 3410317 3410457 -117847073 + B1F2 SINE Alu 5 145 -4 8 611 470 277 82 16 chr12 3410474 3410644 -117846886 + B3A SINE B2 36 212 -4 8 611 645 232 142 12 chr12 3410697 3410937 -117846593 + B4A SINE B4 2 272 -20 8 611 414 0 0 0 chr12 3410957 3411003 -117846527 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 611 758 146 95 0 chr12 3411165 3411302 -117846228 + B1_Mur4 SINE Alu 1 150 0 8 611 29 0 0 0 chr12 3412145 3412174 -117845356 + AT_rich Low_complexity Low_complexity 1 29 0 8 611 1241 41 0 0 chr12 3412187 3412334 -117845196 - B1_Mm SINE Alu 0 147 1 8 611 242 228 16 16 chr12 3412341 3412410 -117845120 - B1_Mur1 SINE Alu -22 127 59 8 611 422 250 39 29 chr12 3412597 3412700 -117844830 + B1_Mur2 SINE Alu 34 137 -12 8 611 337 83 348 18 chr12 3412697 3412809 -117844721 - B2_Mm2 SINE B2 0 195 47 8 611 1122 114 66 0 chr12 3412860 3413027 -117844503 - B2_Mm1t SINE B2 -14 179 2 8 611 1641 37 0 16 chr12 3413116 3413310 -117844220 + B2_Mm1a SINE B2 1 191 -2 8 611 431 240 429 0 chr12 3413321 3413475 -117844055 + ID_B1 SINE B4 3 222 -2 8 611 469 207 0 0 chr12 3413506 3413588 -117843942 + B1F SINE Alu 36 117 -32 8 611 217 348 43 17 chr12 3413603 3413720 -117843810 + B4 SINE B4 79 198 -94 8 611 441 238 9 9 chr12 3413615 3413721 -117843809 + B1F2 SINE Alu 5 110 -39 8 611 611 26 0 13 chr12 3413880 3413958 -117843572 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 8 611 638 122 135 24 chr12 3413971 3414097 -117843433 - B2_Mm2 SINE B2 -55 140 1 8 611 327 220 0 0 chr12 3414098 3414157 -117843373 - ID_B1 SINE B4 -68 156 98 8 611 3443 67 87 59 chr12 3414482 3414987 -117842543 + MURVY-LTR LTR ERV1 1 519 0 8 611 228 250 0 0 chr12 3415058 3415102 -117842428 + polypurine Low_complexity Low_complexity 2 45 0 8 611 1362 137 69 24 chr12 3415103 3415394 -117842136 + RLTR9D LTR ERVK 88 391 -12 8 611 410 295 65 59 chr12 3415422 3415743 -117841787 + ETnERV-int LTR ERVK 4 326 -2988 8 611 1685 137 114 118 chr12 3415772 3416220 -117841310 + RLTR45-int LTR ERVK 2070 2515 -4729 8 611 1301 101 40 0 chr12 3416226 3416425 -117841105 + RLTR9B2 LTR ERVK 214 420 0 8 611 2712 90 17 12 chr12 3416436 3416843 -117840687 - MT2C_Mm LTR ERVL -66 409 1 8 611 406 280 168 0 chr12 3417044 3417169 -117840361 - B3A SINE B2 -17 181 36 8 611 1101 100 119 0 chr12 3417183 3417343 -117840187 - B2_Mm2 SINE B2 -14 181 3 8 611 677 69 30 0 chr12 3417367 3417475 -117840055 - B1_Mm SINE Alu 0 120 2 8 611 433 242 0 42 chr12 3417513 3417608 -117839922 - B1_Mus2 SINE Alu -56 91 1 8 611 306 306 167 16 chr12 3417616 3417742 -117839788 - B3A SINE B2 -3 195 51 8 611 441 212 39 29 chr12 3418159 3418261 -117839269 + B1_Mur2 SINE Alu 2 104 -45 8 611 330 271 116 36 chr12 3418261 3418289 -117839241 + B4 SINE B4 87 227 -65 8 611 230 369 0 0 chr12 3418289 3418354 -117839176 + B4 SINE B4 3 67 -225 8 611 375 252 0 64 chr12 3418335 3418445 -117839085 + MT2B LTR ERVL 155 257 -344 8 611 704 163 78 0 chr12 3418357 3418486 -117839044 + B1_Mur4 SINE Alu 11 149 -1 8 611 820 248 18 51 chr12 3418525 3418742 -117838788 + B4 SINE B4 56 265 -27 8 611 352 311 0 24 chr12 3418771 3418896 -117838634 + ID_B1 SINE B4 103 224 0 8 611 574 241 141 20 chr12 3419100 3419299 -117838231 + ID_B1 SINE B4 2 224 0 8 611 607 235 7 99 chr12 3419368 3419519 -117838011 + B1_Mur2 SINE Alu 1 137 -12 8 611 2186 79 42 207 chr12 3419534 3420013 -117837517 - MTB LTR MaLR 0 400 1 9 611 611 312 25 0 chr12 3420126 3420286 -117837244 - RSINE1 SINE B4 0 165 2 9 611 328 303 23 8 chr12 3420467 3420600 -117836930 + L2 LINE L2 1320 1454 -1965 9 611 720 158 211 12 chr12 3420758 3420924 -117836606 - URR1A DNA MER1_type -27 199 1 9 611 590 176 119 22 chr12 3421075 3421209 -117836321 - B1_Mur4 SINE Alu 0 150 4 9 611 602 254 34 23 chr12 3421236 3421413 -117836117 - B3 SINE B2 -36 180 2 9 611 1208 49 146 0 chr12 3421646 3421810 -117835720 - B2_Mm2 SINE B2 -7 188 1 9 611 533 195 137 8 chr12 3421889 3422013 -117835517 + B1_Mur1 SINE Alu 10 149 0 9 611 984 124 62 0 chr12 3422026 3422187 -117835343 + B2_Mm1t SINE B2 1 171 -22 9 611 339 161 14 0 chr12 3422236 3422301 -117835229 + B2_Mm2 SINE B2 46 116 -82 9 611 180 0 0 0 chr12 3422320 3422340 -117835190 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 611 228 35 0 0 chr12 3422343 3422372 -117835158 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 611 287 303 0 50 chr12 3422416 3422496 -117835034 - B3A SINE B2 -50 148 73 9 611 1891 112 53 0 chr12 3422501 3422804 -117834726 - ORR1A2 LTR MaLR -8 319 1 9 611 504 271 27 14 chr12 3423043 3423189 -117834341 - B1F SINE Alu 0 149 2 9 611 559 259 160 37 chr12 3423269 3423538 -117833992 + Lx8 LINE L1 7172 7473 0 9 611 1388 34 55 22 chr12 3423562 3423744 -117833786 + B2_Mm2 SINE B2 2 189 -6 9 611 238 208 38 117 chr12 3423844 3424057 -117833473 + RMER17C LTR ERVK 80 275 -135 9 611 271 286 86 0 chr12 3424109 3424179 -117833351 + ID4 SINE ID 6 81 -2 9 611 532 209 9 0 chr12 3424821 3424926 -117832604 + B1_Mur2 SINE Alu 31 136 -13 9 611 1123 69 0 7 chr12 3424945 3425091 -117832439 - B1_Mus1 SINE Alu -1 147 3 9 611 262 215 106 71 chr12 3425165 3425250 -117832280 - ID_B1 SINE B4 -3 221 134 9 611 229 266 211 9 chr12 3425168 3425282 -117832248 - B1F2 SINE Alu -6 143 7 9 611 1070 57 0 0 chr12 3425475 3425615 -117831915 + B2_Mm2 SINE B2 1 140 -55 9 611 238 301 99 94 chr12 3425615 3425666 -117831864 + ID_B1 SINE B4 1 192 -32 9 611 894 76 96 48 chr12 3426052 3426218 -117831312 - B2_Mm2 SINE B2 -9 186 13 9 611 841 132 7 13 chr12 3427874 3428028 -117829502 + T-rich Low_complexity Low_complexity 2 154 0 9 611 1435 60 22 0 chr12 3428317 3428499 -117829031 + B2_Mm2 SINE B2 1 186 -9 9 611 550 214 108 54 chr12 3428513 3428661 -117828869 - RSINE1 SINE B4 0 165 10 9 611 646 156 148 0 chr12 3428687 3428815 -117828715 - B1_Mus1 SINE Alu -1 147 1 9 611 395 302 25 17 chr12 3429029 3429147 -117828383 - PB1D7 SINE Alu -1 119 1 9 611 649 257 0 14 chr12 3429147 3429228 -117828302 - ID SINE ID -144 80 2 9 611 221 200 0 0 chr12 3429473 3429513 -117828017 - PB1D7 SINE Alu -7 113 74 9 611 294 291 25 0 chr12 3429553 3429632 -117827898 - B1_Mur1 SINE Alu -1 148 68 9 611 221 86 0 0 chr12 3429828 3429863 -117827667 + B3A SINE B2 3 37 -161 9 611 512 319 58 122 chr12 3429962 3430178 -117827352 - B4A SINE B4 0 292 83 9 611 556 231 237 0 chr12 3430178 3430347 -117827183 - B3 SINE B2 -7 209 1 9 611 512 319 58 122 chr12 3430347 3430441 -117827089 - B4A SINE B4 -210 82 2 9 611 727 159 67 15 chr12 3430525 3430659 -117826871 + B1_Mus1 SINE Alu 1 141 -7 9 611 240 327 29 9 chr12 3430715 3430820 -117826710 + PB1D10 SINE Alu 5 111 -6 9 611 279 0 0 0 chr12 3430937 3430968 -117826562 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 9 611 479 160 75 0 chr12 3430991 3431085 -117826445 - B2_Mm2 SINE B2 -50 145 45 9 611 815 247 10 31 chr12 3431122 3431318 -117826212 - B3A SINE B2 -6 192 1 9 611 475 241 209 40 chr12 3431426 3431603 -117825927 + ID_B1 SINE B4 3 209 -15 9 611 820 157 0 60 chr12 3431747 3431896 -117825634 - B1_Mus2 SINE Alu -7 140 1 9 611 247 206 203 16 chr12 3431896 3431952 -117825578 - PB1D10 SINE Alu -41 76 8 9 611 522 208 81 106 chr12 3431952 3432057 -117825473 - ID_B1 SINE B4 -67 157 1 9 611 231 188 27 55 chr12 3432154 3432227 -117825303 - L1VL4 LINE L1 -857 5023 4953 9 611 243 258 196 0 chr12 3432463 3432560 -117824970 + B1F SINE Alu 33 148 -1 9 611 466 281 117 68 chr12 3432567 3432876 -117824654 + MLT1E LTR MaLR 330 653 0 9 611 223 250 169 13 chr12 3432973 3433050 -117824480 + B3A SINE B2 2 90 -108 9 611 1238 48 0 0 chr12 3433330 3433476 -117824054 - B1_Mm SINE Alu 0 147 2 9 611 1579 174 64 0 chr12 3433699 3434026 -117823504 - ORR1B1 LTR MaLR 0 394 47 9 611 240 357 17 25 chr12 3434102 3434220 -117823310 - PB1D10 SINE Alu 0 117 1 9 611 252 221 0 14 chr12 3434352 3434421 -117823109 - RMER15 LTR ERVL -101 474 407 9 611 284 318 9 36 chr12 3434543 3434654 -117822876 - PB1D7 SINE Alu -2 118 11 9 611 1612 47 0 5 chr12 3434861 3435054 -117822476 - B2_Mm1t SINE B2 -1 192 1 9 611 1342 92 16 16 chr12 3435065 3435252 -117822278 - B2_Mm2 SINE B2 -7 188 2 9 611 2406 117 136 9 chr12 3435252 3435881 -117821649 - L1VL4 LINE L1 -3783 2094 1342 9 611 195 42 0 0 chr12 3435883 3435907 -117821623 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 611 1071 69 0 0 chr12 3435907 3436052 -117821478 - B2_Mm2 SINE B2 -50 145 1 9 611 5470 68 86 9 chr12 3436053 3436831 -117820699 - L1VL4 LINE L1 -2555 1359 549 9 611 648 213 6 83 chr12 3437051 3437208 -117820322 - B3 SINE B2 -57 159 15 9 611 581 195 101 8 chr12 3437214 3437343 -117820187 - B1_Mm SINE Alu -6 141 1 9 611 769 131 3 21 chr12 3437469 3437637 -117819893 - B2_Mm2 SINE B2 -28 165 2 9 611 588 226 0 82 chr12 3437665 3437824 -117819706 - B1_Mur1 SINE Alu 0 149 4 9 611 345 47 0 0 chr12 3438146 3438189 -117819341 + (TAG)n Simple_repeat Simple_repeat 3 45 0 9 611 1207 62 0 0 chr12 3438877 3439022 -117818508 - B1_Mus2 SINE Alu 0 147 3 9 611 257 151 19 0 chr12 3439410 3439463 -117818067 + CT-rich Low_complexity Low_complexity 3 56 0 9 611 537 176 67 8 chr12 3439505 3439625 -117817905 - B1_Mur4 SINE Alu -15 135 9 9 611 235 281 122 9 chr12 3439523 3439638 -117817892 - B4 SINE B4 -88 204 77 9 611 357 250 53 0 chr12 3439662 3439738 -117817792 - B1F SINE Alu -58 91 12 9 611 326 362 0 9 chr12 3439747 3439853 -117817677 - PB1D10 SINE Alu -12 105 1 9 611 1489 62 5 20 chr12 3439955 3440153 -117817377 - B2_Mm2 SINE B2 0 195 1 9 611 797 81 81 0 chr12 3440444 3440568 -117816962 + B1_Mus1 SINE Alu 9 142 -6 9 611 1048 87 6 12 chr12 3440570 3440733 -117816797 + (GAAA)n Simple_repeat Simple_repeat 2 163 0 9 611 600 273 82 6 chr12 3440926 3441127 -117816403 + ID_B1 SINE B4 1 215 -9 9 611 434 332 93 35 chr12 3441457 3441747 -117815783 - L1MD2 LINE L1 -6167 380 74 9 611 368 277 50 16 chr12 3441815 3441936 -117815594 - MTEa LTR MaLR -52 327 203 9 611 595 194 40 0 chr12 3442052 3442176 -117815354 - B1_Mus2 SINE Alu -13 134 6 9 611 389 286 9 28 chr12 3442979 3443087 -117814443 + PB1 SINE Alu 2 107 -20 9 611 439 273 71 77 chr12 3443091 3443246 -117814284 + RSINE1 SINE B4 12 165 0 9 611 22 56 0 0 chr12 3443251 3443287 -117814243 + AT_rich Low_complexity Low_complexity 1 36 0 9 611 189 107 0 0 chr12 3443544 3443572 -117813958 + (A)n Simple_repeat Simple_repeat 1 28 0 9 611 388 287 35 0 chr12 3443599 3443686 -117813844 + PB1D10 SINE Alu 1 90 -27 9 611 369 345 35 0 chr12 3443686 3443710 -117813820 + ID_B1 SINE B4 82 196 -28 9 611 325 152 0 17 chr12 3443710 3443770 -117813760 - ORR1D2 LTR MaLR 0 370 312 9 611 862 103 0 0 chr12 3443773 3443899 -117813631 - B1_Mus1 SINE Alu -22 126 1 9 611 1164 111 55 0 chr12 3443910 3444091 -117813439 - B2_Mm1t SINE B2 -1 192 2 9 611 1299 6 13 0 chr12 3444227 3444384 -117813146 - L1Md_F2 LINE L1 -12 6570 6412 9 611 260 269 68 97 chr12 3444497 3444600 -117812930 + RSINE1 SINE B4 12 111 -54 9 611 269 245 0 0 chr12 3446383 3446432 -117811098 - B1F2 SINE Alu -100 49 1 9 611 400 179 15 0 chr12 3446700 3446767 -117810763 + B3A SINE B2 3 70 -128 9 611 576 230 28 28 chr12 3447105 3447248 -117810282 + B1_Mur4 SINE Alu 7 149 -1 9 611 924 101 28 35 chr12 3447350 3447494 -117810036 - B1_Mus1 SINE Alu -5 143 1 9 611 227 106 20 78 chr12 3447739 3447790 -117809740 - ID4_ SINE ID -14 69 22 9 611 538 43 0 0 chr12 3448281 3448350 -117809180 + BC1_Mm scRNA scRNA 2 70 -82 9 611 781 189 254 0 chr12 3448395 3448564 -117808966 + B3 SINE B2 2 213 -3 9 611 2505 60 3 0 chr12 3448654 3448971 -117808559 + L1_Mus1 LINE L1 6250 6567 0 9 611 1131 128 5 46 chr12 3449051 3449247 -117808283 - B2_Mm2 SINE B2 -7 188 1 9 611 681 206 6 11 chr12 3449267 3449323 -117808207 + polypyrimidine Low_complexity Low_complexity 122 178 0 9 611 1712 11 0 0 chr12 3449323 3449513 -117808017 - B2_Mm1a SINE B2 -2 191 2 9 611 681 206 6 11 chr12 3449513 3449633 -117807897 + polypyrimidine Low_complexity Low_complexity 4 121 0 9 611 205 297 0 52 chr12 3449734 3449807 -117807723 + T-rich Low_complexity Low_complexity 25 94 0 1 611 753 218 0 26 chr12 3449807 3449958 -117807572 - B1_Mm SINE Alu 0 147 1 1 611 205 297 0 52 chr12 3449958 3449980 -117807550 + T-rich Low_complexity Low_complexity 4 24 0 1 611 383 282 0 0 chr12 3450650 3450728 -117806802 - PB1D10 SINE Alu -37 80 3 1 611 225 0 0 0 chr12 3450737 3450762 -117806768 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 611 314 157 322 8 chr12 3450777 3450898 -117806632 - B2_Mm2 SINE B2 -8 187 29 1 611 1329 79 11 0 chr12 3450908 3451085 -117806445 - B2_Mm1t SINE B2 -14 179 1 1 611 899 223 24 24 chr12 3451960 3452171 -117805359 - B3 SINE B2 -5 211 1 1 611 193 257 124 13 chr12 3452219 3452330 -117805200 - MIRb SINE MIR -39 223 104 1 611 429 20 0 0 chr12 3452397 3452447 -117805083 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1 611 1221 100 0 0 chr12 3452451 3452621 -117804909 - B2_Mm2 SINE B2 -25 170 1 1 611 251 276 269 29 chr12 3452689 3452864 -117804666 - MLT1K LTR MaLR -8 587 371 1 611 243 310 42 50 chr12 3453433 3453552 -117803978 + PB1D9 SINE Alu 3 120 0 1 611 783 317 132 31 chr12 3453861 3454216 -117803314 - MER21B LTR ERV1 -1 862 472 1 611 333 320 134 46 chr12 3454346 3454585 -117802945 - MER21B LTR ERV1 -584 279 20 1 611 378 171 0 67 chr12 3454665 3454740 -117802790 + B3A SINE B2 4 73 -125 1 611 28 48 0 0 chr12 3454907 3454949 -117802581 + AT_rich Low_complexity Low_complexity 1 42 0 1 611 279 307 123 26 chr12 3455925 3456079 -117801451 - MIR SINE MIR -16 246 78 1 611 249 83 0 0 chr12 3456198 3456234 -117801296 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 611 319 156 14 0 chr12 3456249 3456312 -117801218 - B2_Mm2 SINE B2 -82 116 48 1 611 1164 139 0 0 chr12 3456394 3456567 -117800963 - B2_Mm2 SINE B2 -22 173 1 1 611 314 233 68 0 chr12 3457412 3457485 -117800045 + B4A SINE B4 1 78 -214 1 611 201 128 0 49 chr12 3457564 3457605 -117799925 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 1 611 266 322 147 83 chr12 3457689 3457845 -117799685 + B4A SINE B4 43 208 -84 1 611 28 0 0 0 chr12 3457964 3457992 -117799538 + GC_rich Low_complexity Low_complexity 1 28 0 1 611 363 252 27 27 chr12 3458124 3458234 -117799296 - PB1D10 SINE Alu 0 117 8 1 611 1479 63 16 0 chr12 3458325 3458514 -117799016 - B2_Mm2 SINE B2 -1 194 3 1 611 589 242 43 65 chr12 3458535 3458765 -117798765 - L1MC1 LINE L1 -196 6137 5913 1 611 354 276 236 0 chr12 3458856 3458979 -117798551 - RSINE1 SINE B4 -12 153 2 1 611 1337 272 108 19 chr12 3458979 3459560 -117797970 - L1MC1 LINE L1 -441 5892 5260 1 611 1192 179 9 0 chr12 3459592 3459804 -117797726 - B3 SINE B2 0 216 3 1 611 238 106 0 41 chr12 3460125 3460174 -117797356 + (GAGAA)n Simple_repeat Simple_repeat 3 49 0 1 611 1011 56 0 0 chr12 3460649 3460775 -117796755 - B1_Mm SINE Alu 0 147 22 1 611 644 129 261 14 chr12 3461242 3461384 -117796146 + B2_Mm2 SINE B2 1 177 -18 1 611 234 310 184 9 chr12 3461612 3461726 -117795804 - B1F2 SINE Alu -15 134 1 1 611 263 182 23 8 chr12 3461760 3461814 -117795716 - B1_Mur1 SINE Alu 0 149 97 1 611 324 0 0 0 chr12 3461814 3461850 -117795680 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 611 217 211 63 101 chr12 3461850 3461874 -117795656 - B1_Mm SINE Alu -51 96 72 1 611 1179 48 0 7 chr12 3461874 3462022 -117795508 + B1_Mus1 SINE Alu 2 148 0 1 611 515 377 24 0 chr12 3462044 3462211 -117795319 + B3 SINE B2 21 191 -25 1 611 435 333 52 0 chr12 3462874 3463009 -117794521 + RSINE1 SINE B4 14 155 -10 1 611 693 221 0 0 chr12 3463035 3463162 -117794368 + B1F1 SINE Alu 13 139 -10 1 611 556 172 76 17 chr12 3463723 3463841 -117793689 - B1_Mus1 SINE Alu -2 146 22 1 611 623 200 233 6 chr12 3464330 3464506 -117793024 - B3 SINE B2 0 216 1 1 611 898 121 153 0 chr12 3464972 3465129 -117792401 + B2_Mm2 SINE B2 1 181 -14 1 611 1386 75 5 5 chr12 3465552 3465740 -117791790 - B2_Mm2 SINE B2 -6 189 2 1 611 237 288 15 29 chr12 3465859 3465927 -117791603 + ID4 SINE ID 4 70 -13 1 611 32 26 0 0 chr12 3465971 3466010 -117791520 + AT_rich Low_complexity Low_complexity 1 39 0 1 611 745 187 28 14 chr12 3466062 3466203 -117791327 - B1_Mus2 SINE Alu -1 146 4 1 611 266 246 46 0 chr12 3466260 3466325 -117791205 - B1F SINE Alu -9 140 73 1 611 249 140 0 0 chr12 3466464 3466514 -117791016 - B3 SINE B2 0 216 167 1 611 611 155 0 30 chr12 3466584 3466684 -117790846 + B3 SINE B2 2 98 -118 1 611 233 321 35 35 chr12 3466743 3466830 -117790700 - MLT1D LTR MaLR -418 87 1 1 611 278 239 57 86 chr12 3466830 3466935 -117790595 + B2_Mm1t SINE B2 85 186 -7 1 611 618 252 16 0 chr12 3467098 3467225 -117790305 - B3 SINE B2 -87 129 1 1 611 465 307 107 10 chr12 3467277 3467567 -117789963 + L1MB8 LINE L1 5767 6084 -94 1 611 620 333 6 33 chr12 3467714 3467894 -117789636 - B3A SINE B2 -16 182 8 1 611 563 236 61 20 chr12 3468085 3468099 -117789431 - B4 SINE B4 -61 231 141 1 611 986 56 0 0 chr12 3468099 3468225 -117789305 - B1_Mm SINE Alu -21 126 1 1 611 375 263 13 0 chr12 3468488 3468564 -117788966 + B3A SINE B2 43 119 -79 1 611 1326 48 0 0 chr12 3468587 3468753 -117788777 + (TC)n Simple_repeat Simple_repeat 1 166 0 1 611 215 31 31 0 chr12 3468753 3468785 -117788745 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 611 791 215 82 5 chr12 3468791 3468987 -117788543 + B3 SINE B2 3 213 -3 1 611 1160 67 115 0 chr12 3469650 3469815 -117787715 + B2_Mm1t SINE B2 1 184 -9 1 611 233 263 42 50 chr12 3470239 3470359 -117787171 - L1M5 LINE L1 -2237 3909 3791 1 611 851 44 26 0 chr12 3470382 3470496 -117787034 + (TCTCC)n Simple_repeat Simple_repeat 4 120 0 1 611 337 295 44 33 chr12 3470525 3470616 -117786914 + PB1D10 SINE Alu 13 104 -13 1 611 545 273 23 0 chr12 3470863 3470995 -117786535 + RSINE1 SINE B4 3 137 -28 1 611 438 20 0 0 chr12 3471208 3471259 -117786271 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 1 611 318 250 95 48 chr12 3471280 3471385 -117786145 + PB1D10 SINE Alu 7 116 -1 1 611 688 219 60 13 chr12 3471412 3471593 -117785937 + B3 SINE B2 2 187 -6 1 611 261 270 32 0 chr12 3471735 3471798 -117785732 - ID2 SINE ID -15 68 4 1 611 23 33 0 0 chr12 3471823 3471853 -117785677 + AT_rich Low_complexity Low_complexity 1 30 0 1 611 1180 34 0 20 chr12 3471945 3472095 -117785435 + B1_Mus2 SINE Alu 1 147 0 1 611 378 315 84 71 chr12 3472376 3472530 -117785000 + B3A SINE B2 26 181 -17 1 611 509 223 0 10 chr12 3472557 3472661 -117784869 + B3 SINE B2 1 103 -113 1 611 314 386 8 15 chr12 3472712 3472846 -117784684 + RSINE1 SINE B4 3 135 -30 1 611 30 45 0 0 chr12 3473048 3473092 -117784438 + AT_rich Low_complexity Low_complexity 1 44 0 1 611 330 289 113 0 chr12 3473110 3473207 -117784323 - PB1D10 SINE Alu -8 109 2 1 611 412 273 30 0 chr12 3473298 3473397 -117784133 - B3 SINE B2 -113 103 2 1 611 610 333 0 0 chr12 3473630 3473786 -117783744 - RSINE1 SINE B4 -6 159 4 1 611 22 35 0 0 chr12 3473793 3473822 -117783708 + AT_rich Low_complexity Low_complexity 1 29 0 1 611 216 0 0 0 chr12 3474254 3474278 -117783252 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 611 1109 94 94 0 chr12 3474279 3474450 -117783080 - B2_Mm2 SINE B2 -7 188 2 1 611 745 310 53 36 chr12 3474947 3475228 -117782302 - B4 SINE B4 -2 290 5 1 611 770 276 9 23 chr12 3475275 3475494 -117782036 + B3 SINE B2 1 216 0 1 611 267 255 147 0 chr12 3475865 3475967 -117781563 - RSINE1 SINE B4 -33 132 16 1 611 26 0 0 0 chr12 3476257 3476283 -117781247 + AT_rich Low_complexity Low_complexity 1 26 0 1 611 777 199 0 7 chr12 3476303 3476440 -117781090 - B1_Mur2 SINE Alu -1 148 13 1 611 289 301 24 82 chr12 3476440 3476463 -117781067 - B4A SINE B4 -55 194 78 1 611 302 291 68 62 chr12 3477362 3477523 -117780007 - MTEb LTR MaLR -9 370 209 1 611 264 294 118 53 chr12 3478581 3478750 -117778780 + B3 SINE B2 3 182 -34 1 611 5225 174 33 38 chr12 3478895 3480009 -117777521 - L1_Mur3 LINE L1 -373 5507 4399 1 611 3843 95 0 0 chr12 3480158 3480674 -117776856 - L1_Mus1 LINE L1 0 6567 6052 1 611 1110 49 14 7 chr12 3480756 3480901 -117776629 - B1_Mm SINE Alu 0 147 2 1 611 508 269 18 188 chr12 3480901 3481130 -117776400 - B4A SINE B4 -102 190 1 1 611 426 20 0 0 chr12 3481181 3481232 -117776298 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 611 301 337 96 24 chr12 3481437 3481460 -117776070 - Lx8 LINE L1 -148 7325 7303 1 611 414 0 0 0 chr12 3481460 3481506 -117776024 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 611 301 337 96 24 chr12 3481506 3481649 -117775881 - Lx8 LINE L1 -171 7302 7147 1 611 546 262 49 0 chr12 3481800 3481922 -117775608 - ID_B1 SINE B4 -4 220 93 1 611 703 287 0 24 chr12 3482275 3482443 -117775087 + RSINE1 SINE B4 2 165 0 1 611 198 0 0 0 chr12 3482466 3482488 -117775042 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 611 1276 73 5 88 chr12 3482490 3482572 -117774958 - B2_Mm2 SINE B2 -15 180 104 1 611 1163 54 0 20 chr12 3482572 3482722 -117774808 + B1_Mm SINE Alu 1 147 0 1 611 1276 73 5 88 chr12 3482722 3482833 -117774697 - B2_Mm2 SINE B2 -92 103 3 1 611 208 70 47 0 chr12 3482934 3482977 -117774553 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1 611 21 71 0 0 chr12 3483056 3483098 -117774432 + AT_rich Low_complexity Low_complexity 1 42 0 1 611 286 317 179 0 chr12 3483241 3483364 -117774166 - B1F2 SINE Alu -2 147 3 1 611 342 299 0 30 chr12 3483802 3483902 -117773628 - B4 SINE B4 -193 99 3 1 611 407 302 151 0 chr12 3483924 3484103 -117773427 - B3 SINE B2 -10 206 1 1 611 210 162 0 0 chr12 3484331 3484368 -117773162 + T-rich Low_complexity Low_complexity 5 41 0 1 611 456 326 91 16 chr12 3484670 3484857 -117772673 - ID_B1 SINE B4 -22 202 2 1 611 415 128 62 25 chr12 3484865 3484945 -117772585 + B1_Mur3 SINE Alu 66 148 -1 1 611 237 368 17 26 chr12 3485114 3485231 -117772299 - RMER15 LTR ERVL -189 386 271 1 611 290 281 169 47 chr12 3485234 3485246 -117772284 + CYRA11_Mm Unknown Y-chromosome 138 146 -471 1 611 270 0 0 0 chr12 3485246 3485276 -117772254 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 611 261 0 0 0 chr12 3485276 3485304 -117772226 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 611 290 281 169 47 chr12 3485304 3485328 -117772202 + CYRA11_Mm Unknown Y-chromosome 147 200 -417 1 611 714 167 226 6 chr12 3485328 3485509 -117772021 - URR1B DNA MER1_type 0 225 5 1 611 1093 56 35 0 chr12 3486075 3486217 -117771313 - B1_Mus2 SINE Alu 0 147 1 1 611 486 264 82 62 chr12 3486250 3486444 -117771086 - B3A SINE B2 0 198 1 1 611 327 188 110 0 chr12 3486598 3486677 -117770853 + PB1D10 SINE Alu 29 118 -2 1 611 804 295 45 35 chr12 3486697 3486985 -117770545 + B4A SINE B4 2 292 0 1 611 517 155 57 12 chr12 3487105 3487213 -117770317 + B1_Mur4 SINE Alu 11 118 -32 1 611 614 197 91 0 chr12 3487373 3487505 -117770025 - B1_Mus2 SINE Alu 0 147 4 1 611 738 236 69 20 chr12 3487956 3488159 -117769371 - B3 SINE B2 -2 214 2 1 611 192 282 0 0 chr12 3488178 3488217 -117769313 - L3 LINE CR1 -24 4465 4427 1 611 22 35 0 0 chr12 3488507 3488536 -117768994 + AT_rich Low_complexity Low_complexity 1 29 0 1 611 326 295 13 13 chr12 3488541 3488620 -117768910 + RSINE1 SINE B4 4 82 -83 1 611 180 0 0 0 chr12 3488690 3488710 -117768820 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 611 346 271 112 0 chr12 3489141 3489248 -117768282 + PB1D9 SINE Alu 1 119 -1 1 611 319 331 8 8 chr12 3489284 3489406 -117768124 + L1M5 LINE L1 5696 5817 -307 1 611 186 43 0 0 chr12 3489838 3489861 -117767669 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 611 487 244 118 56 chr12 3489862 3490040 -117767490 - MT2B LTR ERVL -58 543 355 1 611 6549 133 14 11 chr12 3490040 3491083 -117766447 + Lx LINE L1 5595 6640 -14 1 611 9596 77 12 3 chr12 3491105 3492360 -117765170 - L1_Mus1 LINE L1 0 6567 5298 1 611 1545 42 5 0 chr12 3492360 3492550 -117764980 - B2_Mm1t SINE B2 -2 191 1 1 611 9596 105 8 8 chr12 3492550 3493398 -117764132 - L1_Mus1 LINE L1 -586 5297 4455 1 611 980 99 0 28 chr12 3493981 3494126 -117763404 + B1_Mm SINE Alu 1 141 -6 1 611 21 0 0 0 chr12 3494243 3494264 -117763266 + AT_rich Low_complexity Low_complexity 1 21 0 1 611 290 26 0 25 chr12 3494638 3494678 -117762852 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 611 1093 89 6 6 chr12 3494678 3494837 -117762693 - B2_Mm1t SINE B2 -34 159 1 1 611 22 0 0 0 chr12 3494858 3494880 -117762650 + AT_rich Low_complexity Low_complexity 1 22 0 1 611 760 95 26 0 chr12 3495216 3495332 -117762198 + PB1D9 SINE Alu 2 120 0 1 611 296 367 0 0 chr12 3497142 3497232 -117760298 - PB1D10 SINE Alu -7 110 21 1 611 225 0 0 0 chr12 3497657 3497682 -117759848 + (T)n Simple_repeat Simple_repeat 1 25 0 1 611 708 189 13 39 chr12 3497716 3497827 -117759703 - B1_Mur4 SINE Alu 0 150 46 1 611 369 58 0 0 chr12 3497827 3497879 -117759651 + (GCCTAA)n Simple_repeat Simple_repeat 3 54 0 1 611 708 189 13 39 chr12 3497879 3497921 -117759609 - B1_Mur4 SINE Alu -105 45 2 1 611 453 256 23 0 chr12 3498260 3498389 -117759141 + B1_Mm SINE Alu 16 147 0 1 611 224 98 48 32 chr12 3498500 3498563 -117758967 + T-rich Low_complexity Low_complexity 3 66 0 1 611 1124 82 7 0 chr12 3498564 3498711 -117758819 - B1_Mus1 SINE Alu 0 148 1 1 611 554 150 39 20 chr12 3498716 3498818 -117758712 - B1_Mur4 SINE Alu 0 150 47 1 611 321 135 0 0 chr12 3498960 3499012 -117758518 + (T)n Simple_repeat Simple_repeat 1 52 0 1 611 981 45 98 0 chr12 3499015 3499148 -117758382 - B1_Mus2 SINE Alu 0 147 2 1 611 22 35 0 0 chr12 3499465 3499494 -117758036 + AT_rich Low_complexity Low_complexity 1 29 0 1 611 665 224 75 0 chr12 3499508 3499642 -117757888 + B1_Mur2 SINE Alu 6 149 0 1 611 565 176 41 25 chr12 3503533 3503655 -117753875 + B1_Mm SINE Alu 24 147 0 1 611 1420 89 21 0 chr12 3503712 3503903 -117753627 + B2_Mm2 SINE B2 1 195 0 2 611 585 159 94 43 chr12 3503919 3504057 -117753473 + B1_Mur2 SINE Alu 5 149 0 3 611 1097 109 0 0 chr12 3504604 3504751 -117752779 + B1_Mus1 SINE Alu 2 148 0 4 611 25 31 0 0 chr12 3506329 3506361 -117751169 + AT_rich Low_complexity Low_complexity 1 32 0 5 611 23 68 0 0 chr12 3506795 3506839 -117750691 + AT_rich Low_complexity Low_complexity 1 44 0 6 611 248 154 96 0 chr12 3507633 3507685 -117749845 - PB1D9 SINE Alu -63 57 1 7 611 463 298 108 44 chr12 3507816 3508065 -117749465 + B4A SINE B4 1 265 -27 8 611 1468 59 43 0 chr12 3508453 3508639 -117748891 + B2_Mm2 SINE B2 2 195 0 9 611 1172 55 0 7 chr12 3509649 3509796 -117747734 + B1_Mus2 SINE Alu 2 147 0 1 611 1464 73 11 0 chr12 3509923 3510114 -117747416 + B2_Mm1t SINE B2 1 193 0 1 611 344 274 132 9 chr12 3510268 3510382 -117747148 + ID_B1 SINE B4 86 213 -11 1 611 1016 97 14 0 chr12 3510939 3511084 -117746446 + B1_Mus1 SINE Alu 2 148 0 1 611 334 241 141 28 chr12 3511147 3511330 -117746200 + L1MB3 LINE L1 4748 4965 -1181 1 611 578 241 57 0 chr12 3511441 3511582 -117745948 + B1_Mur1 SINE Alu 1 149 0 1 611 1250 41 0 0 chr12 3511645 3511792 -117745738 + B1_Mus1 SINE Alu 2 148 0 1 611 369 0 0 0 chr12 3511792 3511833 -117745697 + (A)n Simple_repeat Simple_repeat 1 41 0 1 611 250 222 79 0 chr12 3511907 3511970 -117745560 - ORR1C2 LTR MaLR 0 384 317 1 611 214 159 45 0 chr12 3511971 3512015 -117745515 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 611 533 131 0 0 chr12 3512023 3512107 -117745423 - B2_Mm2 SINE B2 -110 85 2 2 611 1217 162 142 58 chr12 3512111 3512406 -117745124 - ORR1C2 LTR MaLR -61 323 4 1 611 236 226 113 0 chr12 3512508 3512570 -117744960 + L1MB3 LINE L1 5500 5568 -612 1 611 329 363 50 19 chr12 3512721 3512881 -117744649 - ORR1E LTR MaLR -144 215 51 2 611 710 253 131 54 chr12 3512911 3513316 -117744214 + L1MB3 LINE L1 5598 6033 -150 1 611 345 237 181 120 chr12 3513350 3513566 -117743964 + MTE2a LTR MaLR 10 238 -141 2 611 476 148 6 13 chr12 3513803 3513898 -117743632 - B1_Mus1 SINE Alu -21 99 2 2 611 270 270 0 13 chr12 3513831 3513906 -117743624 - B4 SINE B4 -140 152 79 2 611 426 29 14 29 chr12 3513912 3513982 -117743548 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 2 611 648 52 83 0 chr12 3513982 3514078 -117743452 - B1_Mus2 SINE Alu 0 147 44 2 611 1139 75 0 0 chr12 3514102 3514248 -117743282 - B1_Mus2 SINE Alu 0 147 2 2 611 3255 72 30 9 chr12 3514254 3514690 -117742840 - L1_Mus1 LINE L1 0 6567 6123 2 611 247 279 223 8 chr12 3514695 3514930 -117742600 - L1M4 LINE L1 -442 5722 5449 2 611 387 0 0 0 chr12 3515050 3515093 -117742437 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 611 425 117 91 50 chr12 3515186 3515285 -117742245 - B1_Mur3 SINE Alu 0 149 47 3 611 323 296 101 47 chr12 3515292 3515569 -117741961 - L1M4 LINE L1 -1239 4907 4616 2 611 418 218 44 5 chr12 3515569 3515686 -117741844 - B1F SINE Alu -1 149 25 3 611 766 243 99 19 chr12 3515689 3516012 -117741518 - RLTR15 LTR ERVK -10 349 1 3 611 672 238 0 0 chr12 3516235 3516357 -117741173 - B1_Mur3 SINE Alu -27 122 1 3 611 468 84 24 12 chr12 3516369 3516453 -117741077 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 3 611 758 200 36 0 chr12 3516454 3516594 -117740936 - B1_Mus1 SINE Alu -1 147 3 3 611 249 204 18 53 chr12 3516879 3516936 -117740594 + B1_Mur4 SINE Alu 1 55 -95 3 611 480 194 83 0 chr12 3517251 3517359 -117740171 + B3 SINE B2 1 117 -99 3 611 694 23 0 0 chr12 3517420 3517507 -117740023 + B2_Mm2 SINE B2 1 87 -108 3 611 1283 78 61 0 chr12 3517546 3517570 -117739960 - B2_Mm2 SINE B2 -3 192 162 4 611 387 0 0 0 chr12 3517570 3517613 -117739917 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 611 1283 78 61 0 chr12 3517613 3517768 -117739762 - B2_Mm2 SINE B2 -34 161 3 4 611 392 316 138 59 chr12 3517790 3518079 -117739451 + Charlie1a DNA MER1_type 323 634 -821 4 611 1129 123 30 74 chr12 3518079 3518104 -117739426 - B2_Mm2 SINE B2 -1 194 170 4 611 1222 41 7 0 chr12 3518104 3518250 -117739280 + B1_Mus1 SINE Alu 2 148 0 4 611 1129 123 30 74 chr12 3518250 3518426 -117739104 - B2_Mm2 SINE B2 -26 169 2 4 611 325 279 70 0 chr12 3519395 3519481 -117738049 - B1_Mur2 SINE Alu -7 142 51 4 611 1335 260 68 43 chr12 3519475 3519913 -117737617 + RLTR20B3 LTR ERVK 73 521 -56 4 611 355 204 245 0 chr12 3520236 3520334 -117737196 + URR1B DNA MER1_type 1 122 -103 4 611 1511 54 5 0 chr12 3520334 3520518 -117737012 + B2_Mm1t SINE B2 2 186 -7 4 611 944 133 36 67 chr12 3520550 3520744 -117736786 + B2_Mm2 SINE B2 8 195 0 4 611 241 154 40 145 chr12 3520742 3520818 -117736712 + URR1B DNA MER1_type 132 199 -26 4 611 1007 223 80 53 chr12 3521186 3521561 -117735969 - RMER13A LTR ERVK -377 483 99 5 611 396 0 0 0 chr12 3523675 3523719 -117733811 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 5 611 317 244 68 23 chr12 3523720 3523808 -117733722 - B2_Mm1t SINE B2 -53 140 49 5 611 189 0 0 0 chr12 3523823 3523844 -117733686 + (T)n Simple_repeat Simple_repeat 1 21 0 5 611 5892 79 5 63 chr12 3524091 3524944 -117732586 - RLTR13B4 LTR ERVK 0 803 1 5 611 1185 68 0 0 chr12 3525189 3525335 -117732195 + B1_Mus1 SINE Alu 3 148 0 5 611 198 0 0 0 chr12 3525340 3525362 -117732168 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 611 1659 42 0 0 chr12 3525410 3525602 -117731928 - B2_Mm1t SINE B2 0 193 2 5 611 393 247 180 37 chr12 3525687 3525876 -117731654 - MER20 DNA MER1_type -3 216 1 5 611 5963 98 29 2 chr12 3526212 3527052 -117730478 - L1_Mus4 LINE L1 0 6636 5775 5 611 373 319 15 7 chr12 3527061 3527197 -117730333 - ID_B1 SINE B4 -6 218 82 6 611 431 282 36 51 chr12 3527305 3527443 -117730087 - B3A SINE B2 -21 177 42 6 611 244 234 15 30 chr12 3527546 3527612 -117729918 - MT2A LTR ERVL -400 133 69 6 611 2552 125 7 10 chr12 3527629 3528034 -117729496 - RLTR9E LTR ERVK 0 409 6 6 611 296 56 0 0 chr12 3528060 3528096 -117729434 - ETnERV2-int LTR ERVK -40 7366 7331 6 611 23416 164 54 78 chr12 3528307 3530795 -117726735 - ETnERV2-int LTR ERVK -977 6429 4074 6 611 1239 48 0 0 chr12 3530795 3530942 -117726588 - B1_Mm SINE Alu 0 147 1 6 611 23416 164 54 78 chr12 3530942 3532361 -117725169 - ETnERV2-int LTR ERVK -3333 4073 2695 6 611 1080 45 0 0 chr12 3532361 3532495 -117725035 + (TTCTCC)n Simple_repeat Simple_repeat 3 136 0 6 611 1141 61 0 13 chr12 3532496 3532645 -117724885 - B1_Mm SINE Alu 0 147 1 6 611 23416 164 54 78 chr12 3532645 3533132 -117724398 - ETnERV2-int LTR ERVK -4712 2694 2170 6 611 1241 41 0 0 chr12 3533132 3533279 -117724251 - B1_Mus1 SINE Alu 0 148 2 6 611 23416 164 54 78 chr12 3533279 3534359 -117723171 - ETnERV2-int LTR ERVK -5237 2169 1086 6 611 1402 207 49 61 chr12 3534376 3534599 -117722931 - ETnERV2-int LTR ERVK -2927 387 161 6 611 4654 54 22 5 chr12 3534599 3535176 -117722354 - LTRIS_Mus LTR ERV1 0 587 1 6 611 1402 207 49 61 chr12 3535176 3535343 -117722187 - ETnERV2-int LTR ERVK -3154 160 2 6 611 2818 99 12 22 chr12 3535344 3535757 -117721773 - RLTR9E LTR ERVK 0 409 1 6 611 365 143 0 0 chr12 3535768 3535831 -117721699 - MT2A LTR ERVL -469 64 2 6 611 213 39 0 0 chr12 3535862 3535888 -117721642 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 611 2997 82 12 5 chr12 3536058 3536488 -117721042 + RLTR1D LTR ERV1 157 589 -16 7 611 1079 48 139 6 chr12 3536533 3536584 -117720946 - B2_Mm2 SINE B2 -7 188 129 7 611 321 26 0 0 chr12 3536584 3536622 -117720908 + (GA)n Simple_repeat Simple_repeat 2 39 0 7 611 1079 48 139 6 chr12 3536622 3536736 -117720794 - B2_Mm2 SINE B2 -67 128 3 7 611 367 137 14 14 chr12 3536757 3536831 -117720699 + CT-rich Low_complexity Low_complexity 2 75 0 7 611 434 309 0 73 chr12 3536831 3536981 -117720549 - B1F SINE Alu -5 144 6 7 611 294 29 0 0 chr12 3537214 3537249 -117720281 + (TCTCCC)n Simple_repeat Simple_repeat 4 38 0 7 611 717 194 22 0 chr12 3537249 3537383 -117720147 - B1_Mur3 SINE Alu -12 137 1 7 611 1481 68 26 0 chr12 3538427 3538617 -117718913 + B2_Mm2 SINE B2 1 195 0 7 612 240 384 0 0 chr12 3538998 3539071 -117718459 + B4 SINE B4 2 74 -218 7 612 230 153 94 153 chr12 3539091 3539176 -117718354 + ID_B1 SINE B4 142 221 -3 8 612 510 17 0 0 chr12 3539212 3539271 -117718259 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 612 386 316 20 51 chr12 3539502 3539699 -117717831 + MLT1D LTR MaLR 3 193 -312 8 612 397 262 56 34 chr12 3539698 3539876 -117717654 + MLT1D LTR MaLR 315 496 -9 8 612 468 90 19 0 chr12 3539901 3539989 -117717541 - B1_Mus1 SINE Alu -14 106 15 8 612 181 154 0 55 chr12 3540157 3540212 -117717318 + CT-rich Low_complexity Low_complexity 2 53 0 8 612 364 267 8 84 chr12 3540426 3540454 -117717076 + B4A SINE B4 3 30 -262 8 612 2294 167 125 8 chr12 3540454 3540926 -117716604 + RLTR11A2 LTR ERVK 1 527 0 8 612 364 267 8 84 chr12 3540926 3541028 -117716502 + B4A SINE B4 31 123 -169 8 612 1361 99 10 5 chr12 3541290 3541482 -117716048 + B2_Mm1t SINE B2 1 193 0 8 612 1419 57 23 0 chr12 3541485 3541661 -117715869 + B2_Mm2 SINE B2 2 181 -14 8 612 319 53 12 0 chr12 3541687 3541754 -117715776 - B1_Mm SINE Alu -8 141 75 8 612 752 23 4 0 chr12 3541754 3541863 -117715667 - B1_Mus2 SINE Alu -16 133 21 9 612 1195 61 0 0 chr12 3542271 3542418 -117715112 + B1_Mm SINE Alu 1 147 0 9 612 21 36 0 0 chr12 3542462 3542490 -117715040 + AT_rich Low_complexity Low_complexity 1 28 0 9 612 1116 79 0 0 chr12 3542491 3542631 -117714899 + B1_Mm SINE Alu 2 141 -6 9 612 467 0 0 33 chr12 3542633 3542693 -117714837 + (TAAAA)n Simple_repeat Simple_repeat 3 60 0 9 612 188 303 122 8 chr12 3542756 3542879 -117714651 + L2 LINE L2 2233 2369 -1050 9 612 402 310 116 16 chr12 3543150 3543340 -117714190 + B3 SINE B2 8 216 0 9 612 372 296 31 0 chr12 3543666 3543764 -117713766 - PB1D10 SINE Alu -16 101 1 9 612 336 226 108 0 chr12 3543769 3543871 -117713659 - L1M4 LINE L1 -2475 3671 3559 9 612 334 317 0 0 chr12 3543910 3543992 -117713538 - B3A SINE B2 -20 178 97 9 612 582 240 101 128 chr12 3544025 3544226 -117713304 - L1M4 LINE L1 -2581 3565 3385 9 612 2726 82 193 30 chr12 3544226 3544329 -117713201 - RLTR1B LTR ERV1 0 512 410 1 612 1651 21 16 0 chr12 3544329 3544518 -117713012 - B2_Mm1a SINE B2 0 193 2 1 612 2726 82 193 30 chr12 3544518 3544854 -117712676 - RLTR1B LTR ERV1 -103 409 1 1 612 582 240 101 128 chr12 3544854 3545159 -117712371 - L1M4 LINE L1 -2762 3384 3074 9 612 505 28 28 0 chr12 3545303 3545374 -117712156 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 612 3062 71 20 58 chr12 3545374 3545821 -117711709 - RLTR23 LTR ERV1 0 430 1 1 612 603 317 35 45 chr12 3545821 3546019 -117711511 - B4A SINE B4 -11 281 86 1 612 303 180 0 76 chr12 3546293 3546359 -117711171 + MTE2b LTR MaLR 58 118 -261 1 612 380 236 65 9 chr12 3546412 3546519 -117711011 + MTE2b LTR MaLR 233 345 -34 1 612 392 220 35 44 chr12 3546539 3546653 -117710877 + ID_B1 SINE B4 41 153 -71 1 612 3135 122 38 46 chr12 3547434 3547934 -117709596 + RLTR19A LTR ERVK 1 496 0 1 612 2863 97 92 0 chr12 3547960 3548353 -117709177 + RLTR23 LTR ERV1 2 430 0 1 612 331 108 15 30 chr12 3548946 3549013 -117708517 + CT-rich Low_complexity Low_complexity 3 68 0 1 612 266 167 0 0 chr12 3549829 3549877 -117707653 + MTC LTR MaLR 1 48 -373 1 612 3131 148 28 80 chr12 3549894 3550604 -117706926 + RMER13B LTR ERVK 10 682 -226 1 612 1860 137 118 12 chr12 3550612 3550952 -117706578 + MTC LTR MaLR 44 419 -2 1 612 425 252 59 83 chr12 3551426 3551595 -117705935 - RSINE1 SINE B4 0 165 1 1 612 3976 53 8 0 chr12 3551902 3552373 -117705157 - MT2C_Mm LTR ERVL 0 475 1 1 612 321 0 0 0 chr12 3552373 3552411 -117705119 - MERVL-int LTR ERVL 0 5485 5448 1 612 345 125 26 53 chr12 3552411 3552487 -117705043 - ORR1A3-int LTR MaLR -1323 640 567 1 612 10398 44 11 1 chr12 3552608 3553832 -117703698 - MERVL-int LTR ERVL -129 5356 4121 1 612 1338 91 32 5 chr12 3554045 3554233 -117703297 + B2_Mm1t SINE B2 1 193 0 1 612 938 208 59 30 chr12 3554330 3554533 -117702997 + B3 SINE B2 5 213 -3 1 612 356 209 12 0 chr12 3554546 3554632 -117702898 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 612 1020 249 144 29 chr12 3554639 3554686 -117702844 + L1MB3 LINE L1 5630 5673 -510 1 612 1536 67 0 5 chr12 3554686 3554881 -117702649 + B2_Mm2 SINE B2 2 195 0 1 612 1020 249 144 29 chr12 3554881 3555242 -117702288 + L1MB3 LINE L1 5674 6085 -98 1 612 426 280 65 10 chr12 3555402 3555584 -117701946 - B3A SINE B2 -2 214 15 1 612 640 141 0 0 chr12 3555584 3555676 -117701854 + 4.5SRNA scRNA scRNA 1 92 -2 1 612 1081 83 0 7 chr12 3555677 3555823 -117701707 + B1_Mus2 SINE Alu 3 147 0 1 612 956 150 111 25 chr12 3555916 3556114 -117701416 - B3 SINE B2 0 216 2 1 612 652 238 119 0 chr12 3556117 3556280 -117701250 - B4A SINE B4 -64 228 46 1 612 710 249 38 150 chr12 3556280 3556673 -117700857 + MTE2a LTR MaLR 1 349 -30 1 612 1225 109 0 33 chr12 3556678 3556859 -117700671 + B2_Mm2 SINE B2 4 178 -17 1 612 929 49 8 0 chr12 3556880 3557002 -117700528 - B1_Mus2 SINE Alu -1 146 24 1 612 577 274 41 31 chr12 3557030 3557226 -117700304 - B3A SINE B2 0 198 1 1 612 302 200 17 0 chr12 3557301 3557361 -117700169 - B4A SINE B4 -231 61 1 1 612 2196 139 65 5 chr12 3558708 3559076 -117698454 - ORR1B1 LTR MaLR 0 394 5 1 612 925 216 34 10 chr12 3559114 3559320 -117698210 - ID_B1 SINE B4 -6 218 8 1 612 601 246 0 28 chr12 3559357 3559499 -117698031 - B1_Mus2 SINE Alu -9 138 1 1 612 428 259 28 0 chr12 3559530 3559638 -117697892 - PB1D10 SINE Alu -1 116 6 1 612 1970 78 14 0 chr12 3559743 3560024 -117697506 + ORR1A2 LTR MaLR 2 286 -41 1 612 405 71 164 18 chr12 3560033 3560140 -117697390 - B2_Mm2 SINE B2 -7 186 47 1 612 1029 65 7 0 chr12 3560158 3560296 -117697234 - B2_Mm1t SINE B2 -28 165 27 1 612 806 80 0 23 chr12 3560319 3560447 -117697083 - B1_Mus1 SINE Alu 0 148 24 1 612 283 26 0 0 chr12 3560450 3560489 -117697041 - B2_Mm2 SINE B2 -155 40 2 1 612 1474 97 69 57 chr12 3561360 3561412 -117696118 + ORR1A2 LTR MaLR 55 106 -221 1 612 1413 54 0 5 chr12 3561412 3561597 -117695933 + L1Md_F2 LINE L1 6387 6570 -12 1 612 1474 97 69 57 chr12 3561597 3561806 -117695724 + ORR1A2 LTR MaLR 107 319 -8 1 612 274 200 0 0 chr12 3561810 3561855 -117695675 - B1F2 SINE Alu -104 45 1 1 612 841 122 0 13 chr12 3561871 3562020 -117695510 + (TTTC)n Simple_repeat Simple_repeat 1 147 0 1 612 757 168 15 0 chr12 3562020 3562151 -117695379 - B1_Mur3 SINE Alu -15 134 2 1 612 243 250 54 0 chr12 3562417 3562473 -117695057 - MLT1H-int LTR MaLR -157 1252 1194 1 612 180 0 0 0 chr12 3562590 3562610 -117694920 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 612 1177 22 0 0 chr12 3562611 3562745 -117694785 - B1_Mus1 SINE Alu -13 135 2 1 612 982 206 10 10 chr12 3562839 3563045 -117694485 - B3 SINE B2 -10 206 1 1 612 1199 54 0 0 chr12 3563122 3563269 -117694261 + B1_Mus1 SINE Alu 1 147 -1 1 612 279 79 0 0 chr12 3563270 3563308 -117694222 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 1 612 497 308 109 34 chr12 3563552 3563872 -117693658 - MLT1H-int LTR MaLR -870 539 196 1 612 44 0 0 60 chr12 3564083 3564107 -117693423 + AT_rich Low_complexity Low_complexity 1 24 0 1 612 1213 48 0 7 chr12 3564107 3564255 -117693275 - B1_Mus2 SINE Alu 0 147 1 1 612 44 0 0 60 chr12 3564255 3564297 -117693233 + AT_rich Low_complexity Low_complexity 1 39 0 1 612 770 250 47 167 chr12 3564499 3564859 -117692671 + MTEb LTR MaLR 1 317 -62 1 612 386 290 20 52 chr12 3564946 3565099 -117692431 - B1F2 SINE Alu -1 148 1 1 612 606 304 16 5 chr12 3566446 3566638 -117690892 + ID_B1 SINE B4 30 223 -1 1 612 671 132 9 0 chr12 3566651 3566765 -117690765 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 1 612 215 229 15 76 chr12 3566794 3566860 -117690670 + PB1D10 SINE Alu 17 78 -39 1 612 210 344 10 50 chr12 3566860 3566895 -117690635 + ID_B1 SINE B4 98 194 -30 1 612 984 257 33 40 chr12 3566919 3567195 -117690335 + B4A SINE B4 1 274 -18 1 612 405 0 0 0 chr12 3567198 3567243 -117690287 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 612 462 170 48 111 chr12 3567244 3567321 -117690209 + PB1D7 SINE Alu 1 66 -54 1 612 1448 79 32 0 chr12 3567321 3567510 -117690020 + B2_Mm2 SINE B2 1 195 0 1 612 462 170 48 111 chr12 3567510 3567558 -117689972 + PB1D7 SINE Alu 67 117 -3 1 612 258 95 0 0 chr12 3567558 3567600 -117689930 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 1 612 609 227 214 6 chr12 3567655 3567828 -117689702 + B3 SINE B2 1 209 -7 1 612 680 262 0 26 chr12 3569040 3569193 -117688337 - B1F SINE Alu 0 149 1 1 612 401 194 82 18 chr12 3569244 3569354 -117688176 - L1ME4a LINE L1 -38 6086 5970 1 612 267 31 0 0 chr12 3569509 3569541 -117687989 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 612 773 124 0 0 chr12 3569565 3569686 -117687844 + B1_Mur4 SINE Alu 29 149 -1 1 612 1657 36 16 0 chr12 3569691 3569883 -117687647 + B2_Mm2 SINE B2 1 195 0 1 612 670 233 81 49 chr12 3570054 3570239 -117687291 + B4 SINE B4 98 288 -4 1 612 292 284 9 29 chr12 3570312 3570417 -117687113 - L1MA5 LINE L1 -23 6277 6175 1 612 276 244 39 0 chr12 3570422 3570500 -117687030 - L1MA5 LINE L1 -4 6296 6216 1 612 1055 214 42 81 chr12 3570510 3570841 -117686689 + MTD LTR MaLR 1 314 -107 1 612 681 170 271 6 chr12 3571432 3571598 -117685932 + B3 SINE B2 1 210 -6 1 612 1175 49 0 0 chr12 3571636 3571779 -117685751 + B1_Mus2 SINE Alu 5 147 0 1 612 191 146 24 0 chr12 3571805 3571846 -117685684 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 612 251 264 19 9 chr12 3572324 3572431 -117685099 + (CCCG)n Simple_repeat Simple_repeat 3 110 0 1 612 23 0 0 0 chr12 3572767 3572790 -117684740 + GC_rich Low_complexity Low_complexity 1 23 0 1 612 354 237 0 93 chr12 3574467 3574574 -117682956 - B1F1 SINE Alu 0 149 53 1 612 266 308 67 9 chr12 3574645 3574750 -117682780 - PB1D10 SINE Alu 0 117 7 1 612 222 216 0 19 chr12 3574832 3574884 -117682646 + PB1D9 SINE Alu 5 55 -65 1 612 993 86 36 0 chr12 3574977 3575116 -117682414 + B1_Mus1 SINE Alu 5 148 0 1 612 1269 93 60 0 chr12 3575180 3575362 -117682168 + B2_Mm2 SINE B2 2 194 -1 1 612 704 301 0 0 chr12 3575543 3575752 -117681778 - B4 SINE B4 -2 290 82 1 612 425 298 81 66 chr12 3575784 3576068 -117681462 - B4A SINE B4 -3 289 2 1 612 466 189 42 67 chr12 3576505 3576624 -117680906 - PB1D10 SINE Alu -1 116 1 1 612 405 297 50 50 chr12 3576928 3577130 -117680400 + Charlie7 DNA MER1_type 375 576 -2036 1 612 612 150 181 0 chr12 3577238 3577365 -117680165 - B1_Mur4 SINE Alu 0 150 1 1 612 549 255 56 7 chr12 3577443 3577585 -117679945 + B1F SINE Alu 1 149 0 1 612 202 167 42 70 chr12 3577696 3577748 -117679782 + T-rich Low_complexity Low_complexity 21 71 0 1 612 1181 62 0 0 chr12 3577748 3577894 -117679636 - B1_Mus2 SINE Alu -1 146 1 1 612 202 167 42 70 chr12 3577894 3577912 -117679618 + T-rich Low_complexity Low_complexity 3 20 0 1 612 570 267 14 0 chr12 3578070 3578216 -117679314 - B1_Mur1 SINE Alu 0 149 2 1 612 694 256 25 39 chr12 3578216 3578419 -117679111 - B3 SINE B2 -14 202 3 1 612 560 111 11 0 chr12 3578421 3578511 -117679019 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 1 612 310 241 223 0 chr12 3578511 3578623 -117678907 - B1_Mus2 SINE Alu -8 139 3 1 612 524 252 24 0 chr12 3578701 3578824 -117678706 - ID_B1 SINE B4 -12 212 87 1 612 390 258 25 0 chr12 3578845 3578965 -117678565 - L1MC2 LINE L1 -517 5827 5705 1 612 212 209 66 118 chr12 3578971 3579047 -117678483 + B1_Mur3 SINE Alu 2 73 -76 1 612 568 247 19 52 chr12 3579074 3579228 -117678302 + B1F SINE Alu 1 149 0 1 612 556 242 206 29 chr12 3579228 3579527 -117678003 - L1MD LINE L1 -2290 5705 5352 1 612 553 261 0 29 chr12 3579558 3579696 -117677834 - RSINE1 SINE B4 -29 136 3 2 612 21 0 0 0 chr12 3579977 3579998 -117677532 + AT_rich Low_complexity Low_complexity 1 21 0 2 612 333 299 47 0 chr12 3580861 3580968 -117676562 - LTR16C LTR ERVL -10 479 368 2 612 27 0 0 0 chr12 3581131 3581158 -117676372 + AT_rich Low_complexity Low_complexity 1 27 0 2 612 589 189 61 16 chr12 3581159 3581315 -117676215 - B3 SINE B2 -4 191 28 2 612 526 134 72 0 chr12 3581309 3581406 -117676124 - B2_Mm1a SINE B2 0 193 90 2 612 273 29 0 0 chr12 3581466 3581500 -117676030 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 612 1144 76 0 0 chr12 3581500 3581645 -117675885 - B1_Mus1 SINE Alu -2 146 2 2 612 249 364 16 0 chr12 3581830 3581951 -117675579 - L1MC1 LINE L1 -66 6267 6145 2 612 1547 36 0 45 chr12 3582132 3582334 -117675196 - B2_Mm1a SINE B2 0 193 1 2 612 963 70 0 0 chr12 3582465 3582594 -117674936 - B2_Mm2 SINE B2 -47 148 20 2 612 756 240 253 32 chr12 3582601 3582945 -117674585 - L1MC1 LINE L1 -474 5859 5440 2 612 452 295 114 13 chr12 3582987 3583145 -117674385 - B4 SINE B4 -1 291 118 2 612 523 151 140 0 chr12 3583042 3583164 -117674366 - B1_Mur1 SINE Alu 0 150 9 2 612 1263 34 0 0 chr12 3583189 3583336 -117674194 - B1_Mus2 SINE Alu 0 147 1 2 612 255 239 60 0 chr12 3583354 3583421 -117674109 - L1MC1 LINE L1 -997 5149 5079 2 612 425 274 98 105 chr12 3583421 3583698 -117673832 + B4A SINE B4 2 276 -16 2 612 377 39 20 0 chr12 3583737 3583788 -117673742 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 612 252 86 0 0 chr12 3583791 3583826 -117673704 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 2 612 649 204 49 14 chr12 3583838 3583982 -117673548 + B1F SINE Alu 1 149 0 2 612 316 224 75 134 chr12 3584013 3584152 -117673378 - L1MC1 LINE L1 -1086 5060 4935 2 612 1258 27 0 0 chr12 3584152 3584299 -117673231 - B1_Mus2 SINE Alu 0 147 1 2 612 316 224 75 134 chr12 3584299 3584360 -117673170 - L1MC1 LINE L1 -1212 4934 4872 2 612 1030 259 63 104 chr12 3584367 3584754 -117672776 - L1MC1 LINE L1 -1403 4743 4382 2 612 937 226 39 14 chr12 3584754 3584961 -117672569 - B3 SINE B2 -4 212 1 2 612 1030 259 63 104 chr12 3584961 3585195 -117672335 - L1MC1 LINE L1 -1765 4381 4148 2 612 252 152 30 15 chr12 3585289 3585356 -117672174 + GA-rich Low_complexity Low_complexity 3 70 0 2 612 251 273 107 102 chr12 3585705 3585901 -117671629 - LTR16A1 LTR ERVL -259 197 1 2 612 835 267 65 61 chr12 3585977 3586240 -117671290 - B4A SINE B4 -28 264 1 2 612 213 242 0 46 chr12 3586325 3586390 -117671140 + T-rich Low_complexity Low_complexity 2 63 0 2 612 325 254 173 0 chr12 3586456 3586566 -117670964 - MTEa LTR MaLR -45 334 206 2 612 279 214 18 0 chr12 3586632 3586688 -117670842 - MTEa LTR MaLR -285 74 18 2 612 427 201 35 98 chr12 3586841 3586984 -117670546 - MER58A DNA MER1_type -4 220 87 2 612 461 214 97 0 chr12 3586987 3587090 -117670440 + ID_B1 SINE B4 99 211 -13 2 612 262 272 36 36 chr12 3587121 3587205 -117670325 - MER58A DNA MER1_type -128 96 13 2 612 36 0 0 0 chr12 3587638 3587674 -117669856 + AT_rich Low_complexity Low_complexity 1 36 0 2 612 217 269 75 0 chr12 3588153 3588220 -117669310 + MIR SINE MIR 79 150 -112 2 612 360 276 11 0 chr12 3588287 3588374 -117669156 - PB1 SINE Alu -13 114 27 2 612 349 67 50 0 chr12 3588687 3588747 -117668783 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 2 612 438 326 14 20 chr12 3588779 3588926 -117668604 + B1F1 SINE Alu 1 146 -3 2 612 824 157 50 0 chr12 3589315 3589455 -117668075 - B1_Mus1 SINE Alu -1 147 1 2 612 363 23 0 0 chr12 3589590 3589634 -117667896 + (TCTCC)n Simple_repeat Simple_repeat 3 46 0 2 612 1051 62 0 0 chr12 3589634 3589779 -117667751 + B2_Mm1a SINE B2 46 190 -3 2 612 230 230 70 0 chr12 3590075 3590142 -117667388 + B1F2 SINE Alu 19 89 -31 2 612 566 178 20 0 chr12 3590292 3590393 -117667137 - PB1D9 SINE Alu -13 107 5 2 612 180 0 0 0 chr12 3590397 3590417 -117667113 + (T)n Simple_repeat Simple_repeat 1 20 0 2 612 219 69 0 0 chr12 3590680 3590709 -117666821 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 612 402 21 0 0 chr12 3590703 3590750 -117666780 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 2 612 930 129 7 13 chr12 3590750 3590899 -117666631 - B1_Mus1 SINE Alu 0 148 1 2 612 22 35 0 0 chr12 3590908 3590937 -117666593 + AT_rich Low_complexity Low_complexity 1 29 0 2 612 722 150 86 8 chr12 3590942 3591070 -117666460 - B1_Mur1 SINE Alu -10 139 2 2 612 340 239 142 0 chr12 3591097 3591210 -117666320 + B1F SINE Alu 1 129 -20 2 612 279 191 73 0 chr12 3591235 3591303 -117666227 + ID4 SINE ID 1 73 -10 2 612 272 273 15 0 chr12 3591551 3591617 -117665913 - PB1D7 SINE Alu -7 113 47 2 612 678 276 35 0 chr12 3592140 3592314 -117665216 - B3A SINE B2 -18 180 1 2 612 22 0 0 0 chr12 3592423 3592445 -117665085 + AT_rich Low_complexity Low_complexity 1 22 0 2 612 380 286 62 43 chr12 3592478 3592639 -117664891 - RSINE1 SINE B4 0 165 2 2 612 24 0 0 0 chr12 3592786 3592810 -117664720 + AT_rich Low_complexity Low_complexity 1 24 0 2 612 591 122 17 2 chr12 3593031 3593143 -117664387 + B1_Mus1 SINE Alu 3 120 0 2 612 682 210 76 49 chr12 3593290 3593475 -117664055 + B2_Mm2 SINE B2 3 192 -3 2 612 575 195 178 0 chr12 3593496 3593614 -117663916 + B1_Mur1 SINE Alu 5 143 -6 2 612 188 0 74 0 chr12 3593682 3593709 -117663821 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 612 853 86 102 0 chr12 3593709 3593837 -117663693 - B1_Mur4 SINE Alu -9 141 1 2 612 303 28 0 0 chr12 3593875 3593911 -117663619 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 2 612 1028 107 7 0 chr12 3593914 3594064 -117663466 - B2_Mm1a SINE B2 -42 151 1 2 612 622 228 223 0 chr12 3594451 3594675 -117662855 - ORR1D1 LTR MaLR 0 374 101 2 612 1127 188 59 59 chr12 3594679 3594967 -117662563 - Lx9 LINE L1 -352 7292 7005 2 612 345 242 10 59 chr12 3595017 3595118 -117662412 - B4A SINE B4 -195 97 2 2 612 309 51 0 0 chr12 3595174 3595213 -117662317 + (TTC)n Simple_repeat Simple_repeat 2 40 0 2 612 1224 54 0 0 chr12 3595215 3595362 -117662168 - B1_Mus1 SINE Alu 0 148 2 2 612 390 244 0 47 chr12 3595851 3595937 -117661593 + RSINE1 SINE B4 15 96 -69 2 612 1099 76 21 0 chr12 3595939 3596083 -117661447 + B1_Mm SINE Alu 1 147 0 2 612 216 0 0 0 chr12 3596083 3596107 -117661423 + (A)n Simple_repeat Simple_repeat 1 24 0 2 612 1295 41 136 0 chr12 3596132 3596150 -117661380 - B2_Mm1a SINE B2 0 193 176 2 612 207 0 0 0 chr12 3596150 3596173 -117661357 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 612 1295 41 136 0 chr12 3596173 3596323 -117661207 - B2_Mm1a SINE B2 -18 175 3 2 612 1426 49 54 0 chr12 3597446 3597630 -117659900 - B2_Mm2 SINE B2 0 195 2 2 612 22 35 0 0 chr12 3598044 3598073 -117659457 + AT_rich Low_complexity Low_complexity 1 29 0 2 612 223 281 68 34 chr12 3598117 3598235 -117659295 + B4 SINE B4 3 124 -168 2 612 511 315 12 6 chr12 3598228 3598394 -117659136 + B4A SINE B4 51 217 -75 2 612 207 0 0 0 chr12 3598481 3598504 -117659026 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 612 1173 55 0 7 chr12 3599048 3599196 -117658334 + B1_Mus2 SINE Alu 1 147 0 2 612 1619 32 5 0 chr12 3599359 3599549 -117657981 - B2_Mm1a SINE B2 -1 192 2 2 612 479 17 0 16 chr12 3600526 3600587 -117656943 + (TTA)n Simple_repeat Simple_repeat 3 62 0 2 612 1471 68 21 0 chr12 3600691 3600881 -117656649 - B2_Mm2 SINE B2 -1 194 1 2 612 402 182 0 13 chr12 3600904 3600982 -117656548 - PB1D9 SINE Alu -6 114 38 2 612 333 0 0 0 chr12 3601000 3601037 -117656493 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 612 877 142 0 13 chr12 3601099 3601250 -117656280 + B3 SINE B2 1 137 -58 2 612 1130 211 9 0 chr12 3601458 3601671 -117655859 - B3 SINE B2 -1 215 1 2 612 380 274 25 8 chr12 3601676 3601794 -117655736 - PB1D7 SINE Alu 0 120 1 2 612 325 287 221 0 chr12 3601840 3601962 -117655568 - RSINE1 SINE B4 -14 151 3 2 612 395 256 123 18 chr12 3602475 3602694 -117654836 - L1MA6 LINE L1 0 6300 6059 2 612 468 56 0 27 chr12 3602695 3602768 -117654762 - L1Md_F2 LINE L1 -12 6570 6500 2 612 679 213 14 7 chr12 3602865 3603007 -117654523 - B1_Mur2 SINE Alu -6 143 1 2 612 22 35 0 0 chr12 3603470 3603499 -117654031 + AT_rich Low_complexity Low_complexity 1 29 0 2 612 718 176 44 7 chr12 3603501 3603638 -117653892 - B1_Mur4 SINE Alu -7 143 2 2 612 1180 54 0 13 chr12 3603764 3603913 -117653617 - B1_Mm SINE Alu 0 147 1 2 612 1754 38 0 0 chr12 3604430 3604639 -117652891 - L1Md_T LINE L1 0 6582 6374 2 612 571 167 52 69 chr12 3607872 3607988 -117649542 - PB1D9 SINE Alu -6 114 1 2 612 874 189 156 0 chr12 3608003 3608183 -117649347 - B3 SINE B2 -7 209 2 2 612 1129 82 7 0 chr12 3608614 3608760 -117648770 + B1_Mus2 SINE Alu 1 147 0 2 612 216 0 0 0 chr12 3608760 3608784 -117648746 + (A)n Simple_repeat Simple_repeat 1 24 0 2 612 375 23 0 0 chr12 3609071 3609115 -117648415 + (CATA)n Simple_repeat Simple_repeat 2 45 0 2 612 972 61 0 0 chr12 3609115 3609246 -117648284 - B2_Mm2 SINE B2 -50 145 15 2 612 1330 101 11 0 chr12 3609578 3609766 -117647764 - B2_Mm1t SINE B2 -3 190 1 2 612 948 227 29 0 chr12 3609868 3610075 -117647455 - B3 SINE B2 0 216 4 2 612 664 148 124 8 chr12 3610191 3610282 -117647248 - B1_Mus1 SINE Alu 0 148 56 2 612 225 94 0 0 chr12 3610282 3610314 -117647216 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 2 612 664 148 124 8 chr12 3610314 3610351 -117647179 - B1_Mus1 SINE Alu -93 55 5 2 612 182 317 17 0 chr12 3610416 3610476 -117647054 - MER5B DNA MER1_type -1 177 117 2 612 186 43 0 0 chr12 3610672 3610695 -117646835 + (T)n Simple_repeat Simple_repeat 1 23 0 3 612 1172 55 7 0 chr12 3610695 3610841 -117646689 - B1_Mus2 SINE Alu 0 147 1 3 612 509 291 131 61 chr12 3611157 3611402 -117646128 + MER21B LTR ERV1 369 630 -233 3 612 431 281 42 21 chr12 3611445 3611587 -117645943 - B4A SINE B4 -146 146 2 3 612 760 223 137 0 chr12 3611989 3612164 -117645366 - B3 SINE B2 -7 209 11 3 612 237 275 130 56 chr12 3612314 3612422 -117645108 - PB1D10 SINE Alu -1 116 1 3 612 210 233 348 17 chr12 3612467 3612585 -117644945 - ID_B1 SINE B4 -66 158 2 3 612 760 183 27 27 chr12 3612760 3612906 -117644624 - B1_Mur4 SINE Alu 0 150 5 3 612 244 182 58 43 chr12 3612924 3612993 -117644537 - Lx6 LINE L1 -8 7452 7383 3 612 479 132 40 0 chr12 3613138 3613214 -117644316 + B3 SINE B2 2 80 -136 3 612 209 250 0 95 chr12 3613228 3613323 -117644207 + A-rich Low_complexity Low_complexity 4 95 0 3 612 204 40 0 0 chr12 3613323 3613348 -117644182 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 612 243 0 0 0 chr12 3613350 3613377 -117644153 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 612 209 250 0 95 chr12 3613377 3613394 -117644136 + A-rich Low_complexity Low_complexity 96 107 0 3 612 1086 95 0 26 chr12 3613394 3613545 -117643985 + B1_Mus2 SINE Alu 1 147 0 3 612 209 250 0 95 chr12 3613545 3613565 -117643965 + A-rich Low_complexity Low_complexity 108 127 0 3 612 435 252 57 0 chr12 3613565 3613688 -117643842 - Lx7 LINE L1 -286 7410 7281 3 612 357 170 233 35 chr12 3613701 3613817 -117643713 - B2_Mm2 SINE B2 -10 185 47 3 612 1253 114 11 0 chr12 3613849 3614025 -117643505 - B2_Mm1t SINE B2 -14 179 2 3 612 3880 192 85 28 chr12 3614026 3614861 -117642669 - Lx7 LINE L1 -421 7275 6393 3 612 221 171 0 0 chr12 3614912 3614953 -117642577 + T-rich Low_complexity Low_complexity 1 41 0 3 612 542 211 83 0 chr12 3615361 3615470 -117642060 - B1_Mur4 SINE Alu -32 118 1 3 612 514 242 7 0 chr12 3615858 3615974 -117641556 + B1F SINE Alu 15 134 -15 3 612 247 193 105 0 chr12 3616342 3616399 -117641131 - ID4_ SINE ID -18 65 3 3 612 1180 88 65 16 chr12 3616538 3616692 -117640838 + B2_Mm2 SINE B2 1 165 -30 3 612 194 0 0 37 chr12 3616692 3616719 -117640811 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 612 1150 58 0 0 chr12 3616719 3616857 -117640673 - B1_Mus2 SINE Alu -9 138 1 3 612 1180 88 65 16 chr12 3616857 3616886 -117640644 + B2_Mm2 SINE B2 166 193 -2 3 612 1266 93 38 11 chr12 3617179 3617363 -117640167 - B2_Mm2 SINE B2 -6 189 1 3 612 22 0 0 0 chr12 3617923 3617945 -117639585 + AT_rich Low_complexity Low_complexity 1 22 0 3 612 1252 34 0 0 chr12 3617945 3618091 -117639439 - B1_Mus2 SINE Alu 0 147 2 3 612 282 56 0 0 chr12 3618324 3618360 -117639170 + (T)n Simple_repeat Simple_repeat 1 36 0 3 612 858 177 0 7 chr12 3618564 3618712 -117638818 - B1_Mus2 SINE Alu 0 147 1 3 612 282 287 108 10 chr12 3618831 3618933 -117638597 + RSINE1 SINE B4 1 112 -53 3 612 36100 77 8 9 chr12 3619604 3625910 -117631620 - L1Md_F2 LINE L1 -2 6580 263 3 612 578 263 58 11 chr12 3626018 3626206 -117631324 - B3A SINE B2 0 198 2 3 612 31 44 0 0 chr12 3626607 3626652 -117630878 + AT_rich Low_complexity Low_complexity 1 45 0 3 612 914 237 84 70 chr12 3627333 3627363 -117630167 - MT2B LTR ERVL -1 600 571 3 612 633 49 0 0 chr12 3627363 3627444 -117630086 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 612 914 237 84 70 chr12 3627444 3627771 -117629759 - MT2B LTR ERVL -31 570 240 3 612 709 177 0 30 chr12 3627746 3627880 -117629650 - MT2B LTR ERVL -403 130 1 3 612 1127 68 0 0 chr12 3630510 3630656 -117626874 - B1_Mm SINE Alu 0 147 2 3 612 755 158 218 11 chr12 3630771 3630950 -117626580 - B3 SINE B2 0 216 1 3 612 626 132 42 35 chr12 3631411 3631615 -117625915 - MYSERV6-int LTR ERVK -997 7962 7813 3 612 1475 56 0 0 chr12 3631619 3631797 -117625733 - B2_Mm1a SINE B2 -14 179 2 3 612 775 167 286 0 chr12 3631816 3631984 -117625546 + B3 SINE B2 1 216 0 3 612 1079 54 0 0 chr12 3632012 3632141 -117625389 - B1_Mus1 SINE Alu -18 130 2 3 612 695 234 55 6 chr12 3632367 3632530 -117625000 + B3A SINE B2 1 171 -27 3 612 779 146 22 45 chr12 3633149 3633328 -117624202 - RMER10A LTR ERVL -45 397 223 3 612 332 242 206 21 chr12 3634034 3634228 -117623302 + L1MC4 LINE L1 7559 7788 -254 3 612 770 167 15 0 chr12 3634249 3634381 -117623149 + B1_Mur2 SINE Alu 2 135 -14 3 612 184 30 0 57 chr12 3634381 3634416 -117623114 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 3 612 679 201 14 27 chr12 3634416 3634431 -117623099 + B1_Mm SINE Alu 134 147 0 3 612 864 143 14 14 chr12 3634440 3634582 -117622948 + B1_Mur3 SINE Alu 1 142 -7 3 612 234 81 0 0 chr12 3634931 3634968 -117622562 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 3 612 1089 63 0 0 chr12 3634968 3635109 -117622421 + (TTTC)n Simple_repeat Simple_repeat 1 142 0 3 612 1463 177 15 0 chr12 3635194 3635450 -117622080 - RLTR14 LTR ERV1 0 382 123 3 612 893 180 55 144 chr12 3635450 3635684 -117621846 - RLTR20C LTR ERVK 0 534 326 3 612 1217 61 0 0 chr12 3635684 3635832 -117621698 + B1_Mus1 SINE Alu 1 148 0 3 612 893 180 55 144 chr12 3635832 3635889 -117621641 - RLTR20C LTR ERVK -209 325 269 3 612 559 116 0 65 chr12 3635885 3635977 -117621553 - RLTR20C LTR ERVK -455 86 1 3 612 692 179 37 0 chr12 3635977 3636102 -117621428 - RLTR14 LTR ERV1 -252 130 1 3 612 441 0 0 0 chr12 3636228 3636277 -117621253 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 3 612 348 109 13 18 chr12 3636293 3636358 -117621172 - B2_Mm2 SINE B2 -83 115 46 3 612 1272 102 23 0 chr12 3636403 3636580 -117620950 - B2_Mm2 SINE B2 -13 182 2 3 612 262 306 185 12 chr12 3636887 3637049 -117620481 + Kanga1c DNA Tc2 1 190 -539 3 612 234 191 0 0 chr12 3637250 3637297 -117620233 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 612 243 286 88 48 chr12 3637297 3637422 -117620108 - L1MC4 LINE L1 -1338 6704 6575 3 612 1300 27 0 0 chr12 3637476 3637623 -117619907 - B1_Mus1 SINE Alu 0 148 2 3 612 1795 138 126 3 chr12 3637660 3638024 -117619506 - MTC LTR MaLR -8 413 5 3 612 339 254 126 79 chr12 3638062 3638276 -117619254 + Kanga1c DNA Tc2 503 726 -3 3 612 563 285 73 20 chr12 3638785 3638989 -117618541 + B4 SINE B4 4 218 -74 3 612 311 203 14 0 chr12 3639170 3639239 -117618291 - L1MC LINE L1 -2412 5470 5401 3 612 619 219 57 0 chr12 3639742 3639865 -117617665 - B3 SINE B2 -86 130 1 3 612 3122 91 64 2 chr12 3639902 3640383 -117617147 - MT2B2 LTR ERVL 0 584 74 3 612 1009 65 0 0 chr12 3640383 3640521 -117617009 + B1_Mus2 SINE Alu 1 138 -9 3 612 444 19 0 0 chr12 3640521 3640574 -117616956 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 3 612 566 105 0 0 chr12 3640574 3640660 -117616870 - MT2B2 LTR ERVL -515 86 1 3 612 1168 75 0 0 chr12 3640708 3640855 -117616675 + B1_Mm SINE Alu 1 147 0 3 612 351 0 0 0 chr12 3640855 3640894 -117616636 + (A)n Simple_repeat Simple_repeat 1 39 0 3 612 379 221 20 59 chr12 3641152 3641253 -117616277 + RSINE1 SINE B4 2 98 -67 3 612 1345 86 16 0 chr12 3641577 3641764 -117615766 + B2_Mm1a SINE B2 4 193 0 3 612 243 329 51 0 chr12 3642578 3642657 -117614873 - ID4 SINE ID 0 83 1 3 612 275 317 9 38 chr12 3642805 3642910 -117614620 - RSINE1 SINE B4 -61 104 3 3 612 434 278 0 17 chr12 3642910 3643027 -117614503 - PB1D10 SINE Alu -2 115 1 3 612 205 415 0 0 chr12 3643449 3643543 -117613987 - L2b LINE L2 -8 3367 3274 3 612 285 29 0 0 chr12 3644442 3644476 -117613054 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 612 651 286 88 27 chr12 3644484 3644746 -117612784 - B4A SINE B4 -14 278 1 3 612 3439 54 51 2 chr12 3645053 3645502 -117612028 - L1_Mus1 LINE L1 0 6567 6097 3 612 2116 58 0 4 chr12 3645502 3645777 -117611753 + L1_Mm LINE L1 5145 5418 -465 3 612 1448 70 27 0 chr12 3645784 3645971 -117611559 - B2_Mm1t SINE B2 -1 192 1 3 612 1481 70 0 5 chr12 3646813 3646999 -117610531 - B2_Mm2 SINE B2 -9 186 2 3 612 489 322 0 14 chr12 3647112 3647257 -117610273 + ID_B1 SINE B4 80 222 -2 3 612 1495 62 0 45 chr12 3647260 3647461 -117610069 + B2_Mm1a SINE B2 1 192 -1 3 612 1224 48 0 7 chr12 3647480 3647628 -117609902 + B1_Mm SINE Alu 1 147 0 3 612 1294 101 20 31 chr12 3648556 3648751 -117608779 - B2_Mm2 SINE B2 -1 194 2 3 612 454 252 35 0 chr12 3649096 3649211 -117608319 + PB1D9 SINE Alu 2 120 0 3 612 547 99 17 144 chr12 3649353 3649471 -117608059 - B1_Mus2 SINE Alu 0 147 45 3 612 227 302 118 36 chr12 3649851 3649961 -117607569 + PB1D7 SINE Alu 1 119 -1 3 612 26651 61 5 1 chr12 3650035 3654106 -117603424 - L1Md_F2 LINE L1 0 6582 2495 3 612 7110 72 1 4 chr12 3654108 3655120 -117602410 - L1Md_F2 LINE L1 -4505 1378 366 3 612 186 43 0 0 chr12 3655325 3655348 -117602182 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 612 236 273 15 0 chr12 3656238 3656304 -117601226 + PB1D10 SINE Alu 43 109 -8 3 612 344 212 61 0 chr12 3656316 3656382 -117601148 + ID4 SINE ID 2 71 -12 3 612 360 0 0 0 chr12 3656388 3656428 -117601102 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 612 398 301 198 33 chr12 3656490 3656823 -117600707 + MLT1J-int LTR MaLR 40 427 -960 3 612 572 294 37 73 chr12 3656984 3657230 -117600300 + MLT1J-int LTR MaLR 620 856 -531 3 612 243 200 232 0 chr12 3657267 3657362 -117600168 + PB1D7 SINE Alu 3 119 -1 3 612 182 354 72 39 chr12 3658057 3658210 -117599320 - L2 LINE L2 -546 2873 2716 3 612 655 255 96 128 chr12 3658210 3658599 -117598931 - MTEa LTR MaLR 0 379 10 3 612 345 171 132 7 chr12 3658908 3659008 -117598522 - PB1D7 SINE Alu -27 120 17 3 612 538 143 61 0 chr12 3659264 3659362 -117598168 + B1_Mur3 SINE Alu 7 110 -39 4 612 260 220 0 125 chr12 3659270 3659374 -117598156 + MT2B2 LTR ERVL 177 267 -317 4 612 489 142 40 29 chr12 3659547 3659721 -117597809 + (CA)n Simple_repeat Simple_repeat 2 177 0 4 612 688 153 254 63 chr12 3660236 3660425 -117597105 - URR1B DNA MER1_type 0 225 1 4 612 955 155 13 13 chr12 3660950 3661100 -117596430 - B1_Mur4 SINE Alu 0 150 1 4 612 273 190 215 0 chr12 3661120 3661199 -117596331 + B1_Mur1 SINE Alu 22 117 -32 4 612 516 32 0 0 chr12 3661664 3661726 -117595804 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 4 612 355 188 165 0 chr12 3661726 3661813 -117595717 - PB1D9 SINE Alu -12 108 9 4 612 33 0 0 0 chr12 3661834 3661867 -117595663 + AT_rich Low_complexity Low_complexity 1 33 0 4 612 1259 34 0 0 chr12 3661867 3662014 -117595516 - B1_Mus2 SINE Alu 0 147 1 4 612 216 111 0 0 chr12 3662168 3662204 -117595326 + (CCTA)n Simple_repeat Simple_repeat 3 38 0 4 612 761 165 87 0 chr12 3662205 3662332 -117595198 - B1_Mur2 SINE Alu -10 139 2 4 612 593 247 169 0 chr12 3662365 3662531 -117594999 - B3 SINE B2 -14 202 9 4 612 261 119 0 0 chr12 3662622 3662664 -117594866 + (T)n Simple_repeat Simple_repeat 1 42 0 4 612 332 314 58 91 chr12 3663084 3663285 -117594245 - MLT1E1A LTR MaLR -89 591 407 4 612 1463 60 16 0 chr12 3663285 3663467 -117594063 - B2_Mm2 SINE B2 -8 187 3 4 612 332 314 58 91 chr12 3663467 3663573 -117593957 - MLT1E1A LTR MaLR -274 406 295 4 612 192 385 68 5 chr12 3663958 3664180 -117593350 + L2 LINE L2 785 1020 -2399 4 612 258 143 0 0 chr12 3664185 3664234 -117593296 + (T)n Simple_repeat Simple_repeat 1 49 0 4 612 1180 55 0 0 chr12 3664235 3664380 -117593150 - B1_Mus2 SINE Alu -1 146 2 4 612 674 312 49 12 chr12 3664554 3664797 -117592733 - B4 SINE B4 -40 252 1 4 612 1057 76 0 0 chr12 3665233 3665364 -117592166 + B1_Mus1 SINE Alu 2 132 -16 4 612 261 139 0 0 chr12 3665366 3665409 -117592121 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 4 612 228 204 0 0 chr12 3665580 3665629 -117591901 + L1M4 LINE L1 3466 3514 -2632 4 612 349 190 88 12 chr12 3665638 3665718 -117591812 + ID_B1 SINE B4 117 202 -22 4 612 1124 82 0 14 chr12 3665846 3665994 -117591536 - B1_Mm SINE Alu 0 147 2 4 612 323 227 170 45 chr12 3666001 3666268 -117591262 + L1M4 LINE L1 3567 3883 -2263 4 612 1051 49 0 144 chr12 3666315 3666482 -117591048 + B1_Mus2 SINE Alu 5 147 0 4 612 198 71 0 0 chr12 3666484 3666512 -117591018 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 612 692 254 47 52 chr12 3666576 3666788 -117590742 + ID_B1 SINE B4 5 215 -9 4 612 674 250 24 104 chr12 3666794 3667044 -117590486 + L1M4 LINE L1 3954 4183 -1963 4 612 634 298 40 105 chr12 3667531 3667835 -117589695 + B4A SINE B4 1 284 -8 4 612 585 250 73 0 chr12 3667908 3668072 -117589458 + L1M4 LINE L1 5024 5199 -947 4 612 770 177 7 13 chr12 3668078 3668227 -117589303 + B1_Mus1 SINE Alu 1 148 0 4 612 384 209 109 11 chr12 3668287 3668379 -117589151 + PB1D9 SINE Alu 17 117 -3 4 612 261 227 61 20 chr12 3668384 3668483 -117589047 + L1M4 LINE L1 5188 5290 -856 4 612 377 237 261 21 chr12 3668721 3668863 -117588667 + B3A SINE B2 5 180 -18 4 612 255 274 113 0 chr12 3668887 3668993 -117588537 + PB1D9 SINE Alu 2 119 -1 4 612 535 164 17 8 chr12 3669001 3669118 -117588412 + L1M4 LINE L1 5317 5434 -744 4 612 447 236 46 25 chr12 3669213 3669377 -117588153 + L1M4 LINE L1 5408 5577 -594 4 612 1112 183 192 19 chr12 3669387 3669699 -117587831 + ORR1C1 LTR MaLR 1 366 -12 4 613 183 318 11 96 chr12 3670997 3671091 -117586439 - MER5A DNA MER1_type -56 133 48 4 613 719 195 219 0 chr12 3672304 3672473 -117585057 + B3 SINE B2 1 206 -10 4 613 1146 62 7 0 chr12 3672497 3672642 -117584888 + B1_Mus2 SINE Alu 1 146 -1 4 613 28 61 0 0 chr12 3672642 3672691 -117584839 + AT_rich Low_complexity Low_complexity 1 49 0 4 613 385 277 16 103 chr12 3673472 3673657 -117583873 - B4A SINE B4 0 292 124 4 613 825 37 0 0 chr12 3674594 3674701 -117582829 + B1_Mus2 SINE Alu 41 147 0 4 613 201 39 0 0 chr12 3675447 3675473 -117582057 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 4 613 409 262 28 0 chr12 3675473 3675580 -117581950 - RSINE1 SINE B4 -48 117 8 4 613 862 239 33 19 chr12 3675673 3675886 -117581644 - B3 SINE B2 0 216 1 4 613 590 221 0 0 chr12 3675925 3676038 -117581492 + B1_Mur2 SINE Alu 2 114 -35 4 613 468 35 0 0 chr12 3676634 3676692 -117580838 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 613 684 237 0 0 chr12 3676894 3677025 -117580505 + B1_Mur1 SINE Alu 18 148 -1 4 613 251 267 93 0 chr12 3677168 3677243 -117580287 - MER3 DNA MER1_type -125 84 3 4 613 399 269 181 34 chr12 3677628 3677832 -117579698 + L1MEd LINE L1 876 1109 -5010 4 613 817 153 13 0 chr12 3679006 3679163 -117578367 + (TA)n Simple_repeat Simple_repeat 1 159 0 4 613 1239 34 0 7 chr12 3679321 3679468 -117578062 + B1_Mm SINE Alu 2 147 0 4 613 225 132 0 0 chr12 3679468 3679506 -117578024 + (A)n Simple_repeat Simple_repeat 1 38 0 4 613 721 162 93 29 chr12 3679777 3679917 -117577613 + B1_Mur4 SINE Alu 1 149 -1 4 613 1069 89 132 29 chr12 3679920 3680094 -117577436 + B2_Mm1t SINE B2 2 193 0 4 613 492 277 0 32 chr12 3680125 3680248 -117577282 + RSINE1 SINE B4 3 121 -44 4 613 27 49 0 0 chr12 3680248 3680289 -117577241 + AT_rich Low_complexity Low_complexity 1 41 0 4 613 322 235 375 0 chr12 3680397 3680597 -117576933 + B4 SINE B4 2 276 -16 4 613 216 342 13 0 chr12 3680617 3680696 -117576834 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 4 613 230 0 0 32 chr12 3681163 3681194 -117576336 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 613 1101 59 0 0 chr12 3681194 3681329 -117576201 - B1_Mus1 SINE Alu -13 135 1 4 613 1183 61 0 7 chr12 3681354 3681502 -117576028 - B1_Mus2 SINE Alu 0 147 1 4 613 602 266 19 7 chr12 3682164 3682319 -117575211 + B3A SINE B2 1 157 -41 4 613 261 0 0 0 chr12 3682325 3682354 -117575176 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 613 223 267 16 48 chr12 3682493 3682556 -117574974 - RSINE1 SINE B4 -60 105 45 4 613 277 278 174 0 chr12 3682837 3682869 -117574661 + B1F1 SINE Alu 1 135 -14 4 613 377 265 0 0 chr12 3682869 3682952 -117574578 + ID_B1 SINE B4 128 210 -14 4 613 441 325 98 37 chr12 3683061 3683571 -117573959 + L1ME3B LINE L1 5337 5889 -351 4 613 773 249 46 0 chr12 3683863 3684036 -117573494 - ID_B1 SINE B4 -42 182 2 4 613 411 288 18 0 chr12 3684122 3684233 -117573297 - RSINE1 SINE B4 -28 137 25 4 613 291 54 0 0 chr12 3684556 3684593 -117572937 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 613 722 174 20 53 chr12 3685019 3685171 -117572359 - B1_Mur4 SINE Alu -3 147 1 4 613 347 256 26 0 chr12 3685437 3685515 -117572015 + PB1D10 SINE Alu 10 89 -28 4 613 417 264 76 23 chr12 3686154 3686286 -117571244 - ID_B1 SINE B4 -5 219 81 4 613 201 74 0 0 chr12 3687308 3687335 -117570195 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 613 219 283 19 0 chr12 3687459 3687512 -117570018 + ID4_ SINE ID 28 81 -2 4 613 290 274 68 133 chr12 3687597 3687756 -117569774 - L1M5 LINE L1 -1449 4697 4564 4 613 1290 119 0 0 chr12 3687756 3687941 -117569589 - B2_Mm2 SINE B2 -9 186 2 4 613 290 274 68 133 chr12 3687941 3688075 -117569455 - L1M5 LINE L1 -1583 4563 4423 4 613 272 253 12 35 chr12 3688085 3688171 -117569359 - ID_B1 SINE B4 0 224 141 4 613 292 235 27 12 chr12 3688086 3688196 -117569334 - B1F SINE Alu 0 149 41 4 613 318 148 0 0 chr12 3688425 3688479 -117569051 + (TTTC)n Simple_repeat Simple_repeat 4 57 0 4 613 1190 68 0 0 chr12 3688479 3688627 -117568903 - B1_Mus1 SINE Alu 0 148 1 4 613 416 327 87 65 chr12 3688635 3689089 -117568441 - L1M5 LINE L1 -1854 4292 3834 4 613 431 208 13 0 chr12 3689089 3689166 -117568364 - ID4_ SINE ID -4 79 2 4 613 416 327 87 65 chr12 3689166 3689307 -117568223 - L1M5 LINE L1 -2313 3833 3684 4 613 207 0 0 0 chr12 3689408 3689431 -117568099 + (T)n Simple_repeat Simple_repeat 1 23 0 4 613 663 56 0 0 chr12 3689431 3689520 -117568010 - B1_Mus2 SINE Alu 0 147 59 4 613 803 313 47 11 chr12 3689577 3689855 -117567675 - B4A SINE B4 -4 288 1 4 613 975 261 5 9 chr12 3689879 3690103 -117567427 + B4 SINE B4 1 223 -69 4 613 411 56 0 0 chr12 3690125 3690179 -117567351 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 613 386 333 60 30 chr12 3690264 3690397 -117567133 + RSINE1 SINE B4 19 155 -10 4 613 807 176 0 27 chr12 3690536 3690682 -117566848 + B1_Mus1 SINE Alu 5 146 -2 4 613 741 229 61 67 chr12 3691046 3691407 -117566123 - RLTR10D LTR ERVK 0 359 1 4 613 542 216 8 8 chr12 3691607 3691724 -117565806 - B3 SINE B2 -99 117 1 4 613 580 102 51 0 chr12 3691957 3692055 -117565475 + BC1_Mm scRNA scRNA 1 103 -49 4 613 228 35 0 0 chr12 3692267 3692296 -117565234 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 613 421 219 0 12 chr12 3692299 3692382 -117565148 - RSINE1 SINE B4 -17 148 67 4 613 225 159 0 0 chr12 3692694 3692738 -117564792 + T-rich Low_complexity Low_complexity 1 44 0 4 613 1117 70 21 0 chr12 3692741 3692884 -117564646 - B1_Mm SINE Alu 0 147 2 4 613 697 294 53 18 chr12 3693329 3693554 -117563976 + B4A SINE B4 52 284 -8 4 613 396 295 27 0 chr12 3693624 3693736 -117563794 + PB1D7 SINE Alu 6 120 0 4 613 402 303 62 21 chr12 3693807 3693952 -117563578 + RSINE1 SINE B4 15 165 0 4 613 366 294 102 16 chr12 3693998 3694126 -117563404 + RSINE1 SINE B4 2 140 -25 4 613 469 236 11 3 chr12 3694189 3694297 -117563233 + B1F SINE Alu 6 112 -8 4 613 519 219 35 9 chr12 3694301 3694416 -117563114 + B1F2 SINE Alu 24 141 -8 5 613 237 132 0 0 chr12 3694422 3694460 -117563070 + (GGA)n Simple_repeat Simple_repeat 2 39 0 5 613 689 117 99 23 chr12 3694486 3694617 -117562913 + B1_Mur3 SINE Alu 9 149 0 5 613 869 294 73 15 chr12 3694641 3694914 -117562616 + B4A SINE B4 4 292 0 5 613 349 305 45 62 chr12 3694940 3695052 -117562478 + ID_B1 SINE B4 40 149 -75 5 613 353 226 36 89 chr12 3694989 3695101 -117562429 + PB1D10 SINE Alu 6 111 -6 5 613 219 45 21 43 chr12 3696550 3696597 -117560933 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 5 613 1172 8 0 0 chr12 3696597 3696730 -117560800 - B1_Mus2 SINE Alu -13 134 2 5 613 1068 85 84 11 chr12 3696762 3696786 -117560744 - B2_Mm1t SINE B2 -1 192 156 5 613 183 42 0 0 chr12 3696786 3696810 -117560720 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 5 613 1167 40 7 0 chr12 3696810 3696963 -117560567 - B2_Mm2 SINE B2 -38 155 2 5 613 321 320 57 0 chr12 3696998 3697120 -117560410 - RSINE1 SINE B4 -33 132 4 5 613 441 241 136 41 chr12 3697120 3697264 -117560266 - B4A SINE B4 -61 231 74 5 613 33 73 0 0 chr12 3697331 3697399 -117560131 + AT_rich Low_complexity Low_complexity 1 68 0 5 613 253 257 26 26 chr12 3697418 3697494 -117560036 + B1F SINE Alu 12 87 -62 5 613 814 289 28 28 chr12 3697523 3697772 -117559758 - B4A SINE B4 -19 273 25 5 613 288 0 0 0 chr12 3697811 3697843 -117559687 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 613 458 356 13 0 chr12 3697896 3698045 -117559485 - ID_B1 SINE B4 -71 153 3 5 613 213 196 0 0 chr12 3698067 3698118 -117559412 + CT-rich Low_complexity Low_complexity 2 52 0 5 613 531 252 13 47 chr12 3698129 3698279 -117559251 - B4 SINE B4 -146 146 2 5 613 813 212 86 0 chr12 3698330 3698528 -117559002 + B3 SINE B2 2 216 0 5 613 305 270 54 0 chr12 3698584 3698695 -117558835 - L1MB7 LINE L1 -34 6150 6034 5 613 1168 223 125 24 chr12 3698736 3699072 -117558458 - ORR1D1 LTR MaLR 0 374 5 5 613 182 180 40 0 chr12 3699180 3699230 -117558300 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 5 613 393 308 22 87 chr12 3699266 3699451 -117558079 + B4 SINE B4 1 173 -119 5 613 37 19 0 18 chr12 3699566 3699582 -117557948 + AT_rich Low_complexity Low_complexity 1 16 0 5 613 1244 27 0 7 chr12 3699582 3699730 -117557800 + B1_Mus2 SINE Alu 1 147 0 5 613 37 19 0 18 chr12 3699730 3699768 -117557762 + AT_rich Low_complexity Low_complexity 1 38 0 5 613 1435 70 11 0 chr12 3699822 3700007 -117557523 + B2_Mm1t SINE B2 2 188 -5 5 613 218 304 29 0 chr12 3700613 3700682 -117556848 + B1F SINE Alu 24 94 -55 5 613 240 151 18 54 chr12 3700713 3700769 -117556761 + B3 SINE B2 1 54 -162 5 613 244 200 0 48 chr12 3700838 3700901 -117556629 - L2 LINE L2 -1052 2367 2308 5 613 387 121 164 0 chr12 3701106 3701192 -117556338 - B1_Mur2 SINE Alu -12 138 34 5 613 243 297 54 0 chr12 3701728 3701802 -117555728 - RSINE1 SINE B4 -10 155 78 5 613 316 281 0 11 chr12 3701903 3701993 -117555537 - B4 SINE B4 -201 91 3 5 613 244 259 0 0 chr12 3701997 3702051 -117555479 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 613 219 295 90 0 chr12 3702055 3702133 -117555397 + B3 SINE B2 95 179 -37 5 613 188 0 0 69 chr12 3702133 3702162 -117555368 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 5 613 840 314 50 0 chr12 3702216 3702455 -117555075 + B4 SINE B4 41 291 -1 5 613 635 270 74 69 chr12 3702483 3702581 -117554949 + B4 SINE B4 2 89 -203 5 613 1405 75 32 0 chr12 3702581 3702769 -117554761 + B2_Mm2 SINE B2 2 195 0 5 613 635 270 74 69 chr12 3702769 3702873 -117554657 + B4 SINE B4 90 205 -87 5 613 1124 264 102 22 chr12 3703306 3703766 -117553764 - L1M4 LINE L1 -1464 4682 4186 5 613 473 216 21 0 chr12 3703819 3703916 -117553614 - PB1D10 SINE Alu -1 116 18 5 613 272 271 104 37 chr12 3703921 3704055 -117553475 + Lx8 LINE L1 7046 7188 -285 5 613 361 271 37 52 chr12 3704640 3704776 -117552754 - ID_B1 SINE B4 -9 215 82 5 613 334 270 120 35 chr12 3704886 3705028 -117552502 + RSINE1 SINE B4 5 158 -7 5 613 209 237 0 50 chr12 3705895 3705975 -117551555 + A-rich Low_complexity Low_complexity 4 79 0 5 613 353 70 18 0 chr12 3706816 3706873 -117550657 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 5 613 1279 50 0 0 chr12 3706875 3707036 -117550494 - B2_Mm1a SINE B2 -31 162 2 5 613 412 248 57 9 chr12 3707607 3707713 -117549817 - B1F2 SINE Alu -37 112 2 5 613 732 209 0 0 chr12 3707753 3707882 -117549648 + B1_Mur1 SINE Alu 10 138 -11 5 613 5400 58 0 6 chr12 3707891 3708564 -117548966 - L1Md_F2 LINE L1 -3 6579 5911 5 613 1512 74 0 0 chr12 3708658 3708848 -117548682 - B2_Mm1a SINE B2 -2 191 2 5 613 1371 74 17 0 chr12 3708848 3709023 -117548507 - B2_Mm2 SINE B2 -17 178 1 5 613 294 330 26 26 chr12 3709097 3709212 -117548318 + PB1D7 SINE Alu 5 119 -1 5 613 1086 168 84 0 chr12 3709301 3709504 -117548026 + URR1A DNA MER1_type 7 226 0 5 613 358 306 50 36 chr12 3709560 3709579 -117547951 + B4A SINE B4 77 217 -75 5 613 740 117 75 0 chr12 3709579 3709699 -117547831 + B1_Mur1 SINE Alu 11 139 -10 5 613 519 261 23 108 chr12 3709723 3709899 -117547631 + RSINE1 SINE B4 4 164 -1 5 613 996 122 190 16 chr12 3710246 3710264 -117547266 - B3 SINE B2 0 216 201 5 613 1169 68 0 20 chr12 3710264 3710414 -117547116 - B1_Mus2 SINE Alu 0 147 1 5 613 996 122 190 16 chr12 3710414 3710579 -117546951 - B3 SINE B2 -16 200 1 5 613 541 261 60 0 chr12 3710647 3710781 -117546749 - B1F SINE Alu -7 142 1 5 613 1525 52 11 0 chr12 3711107 3711298 -117546232 + B2_Mm1t SINE B2 1 193 0 5 613 261 236 73 0 chr12 3711379 3711434 -117546096 + B4A SINE B4 12 70 -222 5 613 840 228 49 5 chr12 3711785 3711988 -117545542 + B3 SINE B2 1 212 -4 5 613 232 319 26 17 chr12 3712258 3712373 -117545157 + PB1D10 SINE Alu 1 116 -1 5 613 669 272 36 25 chr12 3712513 3712709 -117544821 - B3A SINE B2 0 198 1 5 613 441 196 31 10 chr12 3712892 3712990 -117544540 + B1_Mur2 SINE Alu 49 148 -1 5 613 733 145 48 48 chr12 3713496 3713641 -117543889 + B1_Mur4 SINE Alu 6 150 0 5 613 229 186 95 63 chr12 3713719 3713782 -117543748 + PB1D10 SINE Alu 35 99 -18 5 613 296 336 29 9 chr12 3713926 3714031 -117543499 + B4A SINE B4 186 292 0 5 613 1598 42 5 15 chr12 3714139 3714334 -117543196 + B2_Mm1t SINE B2 1 193 0 5 613 789 219 158 0 chr12 3714443 3714626 -117542904 - B3 SINE B2 -4 212 1 5 613 333 47 0 0 chr12 3715554 3715597 -117541933 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 613 3013 37 56 8 chr12 3715672 3716050 -117541480 - MTA_Mm LTR MaLR 0 396 1 5 613 5108 114 34 11 chr12 3716065 3716937 -117540593 - MTB-int LTR MaLR -364 894 3 5 613 2960 74 20 15 chr12 3716937 3717335 -117540195 - MTB LTR MaLR 0 400 1 5 613 347 244 12 0 chr12 3717601 3717683 -117539847 - Lx8 LINE L1 -198 7275 7193 5 613 279 0 0 0 chr12 3717727 3717758 -117539772 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 613 324 238 123 0 chr12 3717813 3717914 -117539616 + B1F1 SINE Alu 1 111 -6 5 613 325 203 14 28 chr12 3717936 3718007 -117539523 + ID SINE ID 8 77 -147 5 613 374 265 35 62 chr12 3719366 3719511 -117538019 + MER5A DNA MER1_type 21 161 -28 5 613 1371 66 22 11 chr12 3719860 3720045 -117537485 - B2_Mm2 SINE B2 -7 188 2 5 613 379 262 159 54 chr12 3721573 3721831 -117535699 + B4A SINE B4 4 288 -4 5 613 831 157 202 27 chr12 3721895 3722078 -117535452 - B3 SINE B2 0 216 2 5 613 180 0 0 0 chr12 3722304 3722324 -117535206 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 613 431 199 128 15 chr12 3722651 3722784 -117534746 - B1F SINE Alu 0 149 2 5 613 201 121 0 0 chr12 3723202 3723235 -117534295 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 613 383 152 115 42 chr12 3723523 3723619 -117533911 + PB1D7 SINE Alu 18 120 0 5 613 225 0 0 0 chr12 3723626 3723651 -117533879 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 5 613 1057 68 0 0 chr12 3723656 3723788 -117533742 + B1_Mur4 SINE Alu 19 150 0 5 613 615 14 0 0 chr12 3724571 3724643 -117532887 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 613 645 105 0 0 chr12 3724706 3724801 -117532729 + (TCCC)n Simple_repeat Simple_repeat 3 97 0 5 613 869 245 48 0 chr12 3724841 3725049 -117532481 - ID_B1 SINE B4 -6 218 1 5 613 514 219 58 8 chr12 3725521 3725641 -117531889 + MER3 DNA MER1_type 61 186 -23 5 613 191 36 36 0 chr12 3725657 3725685 -117531845 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 5 613 584 279 124 52 chr12 3725977 3726227 -117531303 + B4A SINE B4 2 269 -23 5 613 420 20 0 0 chr12 3726227 3726276 -117531254 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 613 1070 204 45 0 chr12 3726725 3726926 -117530604 - B3 SINE B2 -6 210 1 5 613 255 49 45 76 chr12 3727561 3727627 -117529903 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 5 613 816 52 56 168 chr12 3727627 3727788 -117529742 - B1_Mur4 SINE Alu -1 149 7 5 613 359 245 9 89 chr12 3727692 3727804 -117529726 - MT2B LTR ERVL -344 257 155 5 613 896 68 171 63 chr12 3727836 3727994 -117529536 - B2_Mm2 SINE B2 -19 176 2 6 613 731 131 0 9 chr12 3728101 3728209 -117529321 + B1_Mur2 SINE Alu 21 127 -22 6 613 306 67 0 0 chr12 3728213 3728258 -117529272 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 613 243 0 0 0 chr12 3728308 3728335 -117529195 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 613 808 211 0 0 chr12 3728486 3728619 -117528911 + B1_Mur2 SINE Alu 7 139 -10 6 613 628 285 86 5 chr12 3729432 3729619 -117527911 + MER58A DNA MER1_type 7 208 -16 6 613 24 32 0 0 chr12 3730233 3730264 -117527266 + AT_rich Low_complexity Low_complexity 1 31 0 6 613 645 200 28 7 chr12 3730269 3730410 -117527120 + RSINE1 SINE B4 3 146 -19 6 613 239 254 206 15 chr12 3730542 3730603 -117526927 + B1F SINE Alu 2 75 -42 6 613 833 136 15 0 chr12 3730603 3730735 -117526795 + B1_Mm SINE Alu 1 134 -13 6 613 330 264 63 92 chr12 3730608 3730750 -117526780 + B4A SINE B4 91 228 -64 6 613 635 233 23 0 chr12 3730810 3730943 -117526587 + RSINE1 SINE B4 26 161 -4 6 613 1474 231 48 98 chr12 3730966 3731345 -117526185 - ORR1D2 LTR MaLR 0 370 11 6 613 318 261 46 92 chr12 3731496 3731627 -117525903 + B3A SINE B2 74 198 0 6 613 417 70 0 0 chr12 3731698 3731755 -117525775 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 613 1231 40 0 0 chr12 3731810 3731958 -117525572 + B2_Mm2 SINE B2 1 148 -47 6 613 225 0 0 0 chr12 3732300 3732325 -117525205 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 613 297 245 174 35 chr12 3733085 3733229 -117524301 + RSINE1 SINE B4 2 165 0 6 613 250 361 0 0 chr12 3733832 3733904 -117523626 - ID4_ SINE ID 0 83 12 6 613 299 260 130 37 chr12 3733913 3734021 -117523509 - B1F SINE Alu 0 149 32 6 613 548 224 0 8 chr12 3734062 3734179 -117523351 + PB1D7 SINE Alu 5 120 0 6 613 249 291 0 0 chr12 3734295 3734350 -117523180 + PB1D10 SINE Alu 13 67 -50 6 613 432 0 0 0 chr12 3734377 3734425 -117523105 + (TAA)n Simple_repeat Simple_repeat 2 49 0 6 613 595 243 102 92 chr12 3735220 3735429 -117522101 + L1M5 LINE L1 3160 3380 -2766 6 613 692 231 28 0 chr12 3735429 3735572 -117521958 + B1_Mm SINE Alu 1 147 0 6 613 595 243 102 92 chr12 3735572 3735775 -117521755 + L1M5 LINE L1 3381 3576 -2570 6 613 262 287 104 52 chr12 3735771 3736058 -117521472 + L1MD LINE L1 3767 4068 -2078 6 613 21 0 0 0 chr12 3736196 3736217 -117521313 + GC_rich Low_complexity Low_complexity 1 21 0 6 613 292 301 60 27 chr12 3736280 3736430 -117521100 + L1M5 LINE L1 4427 4581 -1565 6 613 440 274 26 0 chr12 3736480 3736597 -117520933 - B1F2 SINE Alu -29 120 1 6 613 364 278 40 34 chr12 3736619 3736768 -117520762 + L1M5 LINE L1 4625 4774 -1372 6 613 533 178 5 44 chr12 3736773 3736895 -117520635 + B1_Mur4 SINE Alu 16 127 -22 6 613 274 309 37 12 chr12 3737010 3737092 -117520438 - B3 SINE B2 -4 212 129 6 613 219 69 0 0 chr12 3737234 3737263 -117520267 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 613 282 293 24 79 chr12 3737293 3737419 -117520111 - RMER4B LTR ERVK -445 140 22 6 613 695 261 22 0 chr12 3737518 3737656 -117519874 - B3 SINE B2 -75 141 1 6 613 1033 193 40 0 chr12 3737709 3737885 -117519645 + B3A SINE B2 1 183 -15 6 613 385 306 9 18 chr12 3737905 3738018 -117519512 + L1MEg LINE L1 813 924 -5160 6 613 278 262 16 0 chr12 3738021 3738082 -117519448 + B1F SINE Alu 54 115 -34 6 613 228 258 61 0 chr12 3738596 3738662 -117518868 + ID4_ SINE ID 11 80 -3 6 613 277 358 0 0 chr12 3738948 3739043 -117518487 - MIR SINE MIR -2 260 166 6 613 201 309 0 0 chr12 3740682 3740737 -117516793 + MER5A DNA MER1_type 78 132 -57 6 613 516 45 0 0 chr12 3741299 3741366 -117516164 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 613 525 215 115 8 chr12 3741376 3741498 -117516032 - B3A SINE B2 -63 135 1 6 613 231 298 128 0 chr12 3741520 3741614 -117515916 - MIR SINE MIR -81 181 76 6 613 624 233 0 0 chr12 3741739 3741855 -117515675 - ID_B1 SINE B4 -1 223 108 6 613 207 219 0 30 chr12 3741859 3741883 -117515647 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 613 1119 55 13 52 chr12 3741883 3742036 -117515494 - B1_Mus2 SINE Alu 0 147 1 6 613 207 219 0 30 chr12 3742036 3742077 -117515453 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 6 613 505 299 8 0 chr12 3742083 3742200 -117515330 - RSINE1 SINE B4 -36 129 12 6 613 750 101 0 0 chr12 3742215 3742324 -117515206 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 6 613 332 267 40 72 chr12 3742968 3743093 -117514437 + PB1 SINE Alu 3 123 -4 6 613 1012 114 0 0 chr12 3743288 3743428 -117514102 + B1_Mur4 SINE Alu 1 140 -10 6 613 21 36 0 0 chr12 3743440 3743468 -117514062 + AT_rich Low_complexity Low_complexity 1 28 0 6 613 189 311 78 70 chr12 3744404 3744546 -117512984 + L2b LINE L2 3228 3370 -5 6 613 270 56 0 0 chr12 3744902 3744938 -117512592 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 613 245 310 14 0 chr12 3744970 3745041 -117512489 - MLT1A LTR MaLR -238 136 65 6 613 631 186 0 85 chr12 3745146 3745287 -117512243 - B1_Mur1 SINE Alu 0 149 21 6 613 600 255 71 47 chr12 3746153 3746322 -117511208 - ID_B1 SINE B4 -51 173 1 6 613 1251 303 138 24 chr12 3746415 3747109 -117510421 + L1MB7 LINE L1 5346 6132 -52 6 613 719 235 102 5 chr12 3747109 3747306 -117510224 + ID_B1 SINE B4 1 216 -8 6 613 1251 303 138 24 chr12 3747306 3747351 -117510179 + L1MB7 LINE L1 6133 6169 -15 6 613 958 177 124 10 chr12 3747435 3747629 -117509901 + B3 SINE B2 1 216 0 6 613 231 217 0 0 chr12 3747661 3747707 -117509823 + L1M1 LINE L1 5550 5595 -708 6 613 393 298 135 49 chr12 3747999 3748303 -117509227 + L1ME1 LINE L1 5839 6168 -11 6 613 198 0 0 0 chr12 3748310 3748332 -117509198 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 613 276 260 0 52 chr12 3748575 3748652 -117508878 - ID_B1 SINE B4 -27 197 125 6 613 1157 50 168 0 chr12 3748883 3749044 -117508486 - B2_Mm2 SINE B2 -6 189 2 6 613 596 226 29 36 chr12 3750356 3750494 -117507036 - B1F SINE Alu -12 137 1 6 613 319 250 0 123 chr12 3750726 3750840 -117506690 + MT2B2 LTR ERVL 156 255 -329 6 613 593 172 20 0 chr12 3750754 3750853 -117506677 + PB1D9 SINE Alu 15 115 -5 6 613 907 234 57 0 chr12 3751457 3751666 -117505864 + ID_B1 SINE B4 2 222 -2 6 613 624 248 24 48 chr12 3752037 3752202 -117505328 + RSINE1 SINE B4 3 163 -2 6 613 989 205 10 34 chr12 3752255 3752462 -117505068 + B3 SINE B2 14 215 -1 6 613 320 282 8 127 chr12 3752798 3752916 -117504614 - PB1D10 SINE Alu -13 104 1 6 613 1207 36 0 0 chr12 3752974 3753112 -117504418 - B1_Mm SINE Alu -9 138 1 6 613 639 255 70 24 chr12 3753129 3753342 -117504188 - ID_B1 SINE B4 -1 223 1 6 613 412 239 18 26 chr12 3753592 3753713 -117503817 - MER5A DNA MER1_type -68 121 1 6 613 1163 75 0 0 chr12 3754504 3754651 -117502879 - B1_Mus2 SINE Alu 0 147 1 6 613 764 213 55 140 chr12 3755035 3755076 -117502454 + B3 SINE B2 1 41 -175 6 613 913 85 131 0 chr12 3755076 3755206 -117502324 + B1_Mus2 SINE Alu 1 147 0 6 613 764 213 55 140 chr12 3755206 3755399 -117502131 + B3 SINE B2 42 215 -1 6 613 371 317 54 36 chr12 3755709 3755876 -117501654 - MLT1I LTR MaLR -203 208 39 6 613 569 285 8 0 chr12 3756322 3756452 -117501078 + ID_B1 SINE B4 84 214 -10 6 613 557 165 216 9 chr12 3756829 3756945 -117500585 - B3 SINE B2 -76 140 1 6 613 718 320 128 41 chr12 3756982 3757419 -117500111 - MER21B LTR ERV1 -52 811 337 6 613 319 324 71 76 chr12 3757457 3757574 -117499956 - MER21B LTR ERV1 -640 223 103 6 613 1450 68 5 10 chr12 3757574 3757768 -117499762 - B2_Mm1t SINE B2 0 193 1 6 613 319 324 71 76 chr12 3757768 3757874 -117499656 - MER21B LTR ERV1 -761 102 2 6 613 304 326 33 0 chr12 3758259 3758351 -117499179 + L2a LINE L2 3327 3421 -5 6 613 287 183 112 79 chr12 3758475 3758564 -117498966 + MT2B2 LTR ERVL 196 287 -297 6 613 722 166 12 1 chr12 3758540 3758676 -117498854 + B1_Mur3 SINE Alu 7 146 -3 6 613 270 176 0 0 chr12 3758692 3758743 -117498787 + (CGGA)n Simple_repeat Simple_repeat 3 53 0 6 613 534 16 0 0 chr12 3758882 3758945 -117498585 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 613 278 81 0 0 chr12 3758945 3758982 -117498548 - B1_Mus2 SINE Alu -71 76 40 6 613 321 113 31 31 chr12 3759014 3759078 -117498452 - ID_B1 SINE B4 -77 147 84 6 613 408 56 0 0 chr12 3759025 3759079 -117498451 - B1_Mur4 SINE Alu -95 55 2 6 613 311 245 9 101 chr12 3760254 3760363 -117497167 - B3 SINE B2 -117 99 1 6 613 222 267 0 0 chr12 3761962 3762007 -117495523 - MIRb SINE MIR -7 261 217 6 613 233 179 0 0 chr12 3761970 3762009 -117495521 - L2b LINE L2 -19 3356 3318 6 613 269 320 50 10 chr12 3763490 3763591 -117493939 - MIR3 SINE MIR -2 206 102 6 613 349 287 132 54 chr12 3764284 3764450 -117493080 - MLT1F2 LTR MaLR -381 179 1 6 613 997 192 63 15 chr12 3765049 3765255 -117492275 - B3 SINE B2 0 216 1 6 613 451 272 245 28 chr12 3765298 3765510 -117492020 + Lx8 LINE L1 7200 7457 -16 6 613 24 0 0 0 chr12 3765514 3765538 -117491992 + AT_rich Low_complexity Low_complexity 1 24 0 6 613 803 124 0 0 chr12 3765541 3765654 -117491876 + B2_Mm2 SINE B2 1 113 -82 6 613 1265 77 41 0 chr12 3765654 3765823 -117491707 - B2_Mm2 SINE B2 -17 178 3 6 613 1157 44 0 0 chr12 3765965 3766102 -117491428 + B1_Mm SINE Alu 2 138 -9 6 613 383 245 145 18 chr12 3766158 3766324 -117491206 - L1M4 LINE L1 -394 5784 5598 6 613 195 118 118 0 chr12 3766501 3766535 -117490995 - L2a LINE L2 -36 3390 3353 7 613 1476 261 84 84 chr12 3766583 3766918 -117490612 - L1MB8 LINE L1 -36 6142 5836 7 613 1753 107 267 22 chr12 3766918 3767233 -117490297 + ORR1B1 LTR MaLR 3 394 0 7 613 1476 262 79 79 chr12 3767233 3767760 -117489770 - L1MB8 LINE L1 -343 5835 5257 7 613 486 0 0 0 chr12 3767777 3767831 -117489699 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 613 24 32 0 0 chr12 3767878 3767909 -117489621 + AT_rich Low_complexity Low_complexity 1 31 0 7 613 294 283 106 38 chr12 3767929 3768061 -117489469 - B1_Mur3 SINE Alu -7 142 2 7 613 609 142 9 19 chr12 3768070 3768178 -117489352 - B1_Mm SINE Alu -9 138 32 7 613 536 261 20 9 chr12 3768485 3768626 -117488904 + B4A SINE B4 53 200 -92 7 613 797 173 142 123 chr12 3768626 3768666 -117488864 + B3 SINE B2 2 33 -183 7 613 804 218 0 14 chr12 3768666 3768810 -117488720 + B1_Mur2 SINE Alu 2 143 -6 7 613 797 173 142 123 chr12 3768810 3768980 -117488550 + B3 SINE B2 34 216 0 7 613 334 269 26 0 chr12 3768986 3769064 -117488466 + B4A SINE B4 212 291 -1 7 613 413 300 53 7 chr12 3769077 3769228 -117488302 - L1MB8 LINE L1 -1013 5133 4976 7 613 658 203 14 21 chr12 3769235 3769376 -117488154 - B1_Mur4 SINE Alu -8 142 3 7 613 1191 48 14 0 chr12 3769640 3769785 -117487745 - B1_Mus2 SINE Alu 0 147 1 7 613 1114 68 0 75 chr12 3770066 3770226 -117487304 + B1_Mus1 SINE Alu 1 148 0 7 613 220 292 100 40 chr12 3770258 3770358 -117487172 + PB1 SINE Alu 19 124 -3 7 613 1186 116 29 0 chr12 3770400 3770573 -117486957 + B2_Mm1t SINE B2 3 180 -13 7 613 186 43 0 0 chr12 3770573 3770596 -117486934 + (GAA)n Simple_repeat Simple_repeat 2 24 0 7 613 670 197 81 29 chr12 3771645 3771781 -117485749 + B1_Mur4 SINE Alu 1 143 -7 7 613 197 86 0 54 chr12 3771782 3771819 -117485711 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 7 613 301 177 167 0 chr12 3772328 3772406 -117485124 - B1F1 SINE Alu 0 149 30 7 613 306 167 0 0 chr12 3774695 3774755 -117482775 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 613 216 237 0 0 chr12 3774863 3774901 -117482629 + PB1D10 SINE Alu 54 91 -26 7 613 298 316 50 25 chr12 3774946 3775066 -117482464 - MIR3 SINE MIR -39 169 47 7 613 247 278 305 49 chr12 3775459 3775646 -117481884 - L3 LINE CR1 -175 4314 4080 7 613 358 259 97 62 chr12 3776434 3776578 -117480952 + ID_B1 SINE B4 3 151 -73 7 613 1945 108 27 98 chr12 3776578 3776823 -117480707 - ORR1A2 LTR MaLR -13 314 94 7 613 1099 75 14 0 chr12 3776823 3776969 -117480561 - B1_Mus1 SINE Alu 0 148 1 7 613 1945 108 27 98 chr12 3776969 3777061 -117480469 - ORR1A2 LTR MaLR -234 93 1 7 613 337 301 23 54 chr12 3777061 3777143 -117480387 + ID_B1 SINE B4 147 224 0 7 613 363 271 50 17 chr12 3777579 3777699 -117479831 + L2a LINE L2 3283 3406 -20 7 613 238 238 46 31 chr12 3777892 3777957 -117479573 - MIR SINE MIR -181 81 16 7 613 673 268 0 14 chr12 3780149 3780293 -117477237 - B1_Mur2 SINE Alu -5 144 3 7 613 23 0 0 0 chr12 3780300 3780323 -117477207 + AT_rich Low_complexity Low_complexity 1 23 0 7 613 423 0 0 0 chr12 3780980 3781027 -117476503 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 613 218 296 11 147 chr12 3783095 3783190 -117474340 - PB1D10 SINE Alu -34 83 2 7 613 282 293 198 0 chr12 3783577 3783734 -117473796 - MER5A DNA MER1_type 0 189 2 7 613 504 0 0 0 chr12 3783956 3784012 -117473518 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 613 207 0 0 0 chr12 3784012 3784035 -117473495 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 613 307 273 6 57 chr12 3785389 3785492 -117472038 + ID4_ SINE ID 10 103 -49 7 613 281 320 29 19 chr12 3785492 3785597 -117471933 + PB1D9 SINE Alu 3 108 -12 7 613 221 322 23 76 chr12 3785597 3785628 -117471902 + BC1_Mm scRNA scRNA 104 137 -15 7 613 329 269 86 40 chr12 3785745 3785896 -117471634 - MIRb SINE MIR -30 238 81 7 613 441 294 209 12 chr12 3786099 3786271 -117471259 + ID_B1 SINE B4 19 224 0 7 613 410 298 0 28 chr12 3786296 3786403 -117471127 + ID_B1 SINE B4 103 206 -18 7 613 1078 157 60 5 chr12 3786434 3786633 -117470897 + B3 SINE B2 2 211 -5 7 613 292 274 50 40 chr12 3787258 3787357 -117470173 - MLT1A1 LTR MaLR -305 103 4 7 613 21 36 0 0 chr12 3789345 3789373 -117468157 + AT_rich Low_complexity Low_complexity 1 28 0 7 613 209 176 0 0 chr12 3789936 3789970 -117467560 + GA-rich Low_complexity Low_complexity 3 36 0 7 613 498 246 0 23 chr12 3790025 3790144 -117467386 + B1F SINE Alu 19 135 -14 7 613 305 47 0 23 chr12 3790144 3790188 -117467342 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 7 613 498 246 0 23 chr12 3790188 3790201 -117467329 + B1F SINE Alu 136 148 -1 7 613 1380 103 5 5 chr12 3790565 3790760 -117466770 + B2_Mm2 SINE B2 1 195 0 7 613 858 47 0 0 chr12 3790779 3790886 -117466644 + (GAA)n Simple_repeat Simple_repeat 2 108 0 7 613 1047 108 0 20 chr12 3790895 3791046 -117466484 + B1_Mus1 SINE Alu 1 148 0 7 613 211 163 0 39 chr12 3791046 3791087 -117466443 + A-rich Low_complexity Low_complexity 11 49 0 7 613 345 247 2 0 chr12 3791532 3791607 -117465923 + PB1D7 SINE Alu 1 76 -51 7 613 216 0 0 0 chr12 3791771 3791795 -117465735 + (A)n Simple_repeat Simple_repeat 1 24 0 7 613 1628 42 0 0 chr12 3792598 3792791 -117464739 - B2_Mm1a SINE B2 0 193 1 7 613 184 272 252 0 chr12 3793935 3794038 -117463492 + MIRc SINE MIR 45 173 -95 7 613 321 288 69 58 chr12 3794638 3794697 -117462833 + ID_B1 SINE B4 50 224 0 7 613 404 243 35 26 chr12 3794697 3794811 -117462719 + B1F SINE Alu 33 147 -2 7 613 480 35 0 0 chr12 3794938 3794996 -117462534 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 7 613 966 242 77 71 chr12 3795002 3795097 -117462433 - RMER10B LTR ERVL -58 340 242 7 613 378 0 0 0 chr12 3795097 3795139 -117462391 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 613 966 242 77 71 chr12 3795139 3795381 -117462149 - RMER10B LTR ERVL -157 241 1 7 613 268 252 19 135 chr12 3795729 3795885 -117461645 - ZP3AR Satellite Satellite -34 178 41 7 613 727 292 87 112 chr12 3796194 3796606 -117460924 + MLT1F2 LTR MaLR 97 498 -62 7 613 769 163 22 0 chr12 3796611 3796746 -117460784 + B1_Mur3 SINE Alu 11 148 -1 7 613 1561 160 50 0 chr12 3796941 3797260 -117460270 + MYSERV16_I-int LTR ERVK 1992 2326 0 7 613 2777 140 82 10 chr12 3797260 3797681 -117459849 + RLTR20B2 LTR ERVK 12 463 -97 7 613 324 0 0 0 chr12 3797681 3797717 -117459813 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 613 2777 140 82 10 chr12 3797717 3797807 -117459723 + RLTR20B2 LTR ERVK 464 559 -1 7 613 318 325 30 59 chr12 3798415 3798618 -117458912 + L1MD2 LINE L1 5803 5999 -360 7 613 480 35 0 0 chr12 3798716 3798774 -117458756 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 7 613 369 0 0 0 chr12 3798793 3798834 -117458696 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 613 1015 125 0 7 chr12 3798851 3798996 -117458534 - B1_Mus1 SINE Alu 0 148 5 7 613 21 36 0 0 chr12 3799163 3799191 -117458339 + AT_rich Low_complexity Low_complexity 1 28 0 7 613 608 204 0 0 chr12 3799191 3799299 -117458231 + B1_Mur2 SINE Alu 41 148 -1 7 613 202 121 0 29 chr12 3799499 3799533 -117457997 + A-rich Low_complexity Low_complexity 2 34 0 7 613 198 87 65 0 chr12 3799907 3799953 -117457577 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 613 268 217 72 0 chr12 3800058 3800127 -117457403 + ID4_ SINE ID 1 74 -9 7 613 626 118 193 0 chr12 3800177 3800296 -117457234 - URR1A DNA MER1_type -84 142 1 7 613 242 319 113 48 chr12 3800296 3800346 -117457184 + CYRA11_Mm Unknown Y-chromosome 376 436 -181 7 613 241 303 22 0 chr12 3800625 3800714 -117456816 - L1MC4 LINE L1 -191 7851 7761 7 613 1148 62 7 0 chr12 3800717 3800862 -117456668 + B1_Mus1 SINE Alu 3 148 0 7 613 210 71 0 0 chr12 3800862 3800890 -117456640 + (A)n Simple_repeat Simple_repeat 1 28 0 7 613 225 0 0 0 chr12 3800946 3800971 -117456559 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 76 727 148 137 23 chr12 3800972 3801103 -117456427 - B1_Mur2 SINE Alu -3 146 1 7 614 657 279 31 12 chr12 3801122 3801282 -117456248 - RSINE1 SINE B4 0 165 3 7 614 436 279 0 0 chr12 3801286 3801390 -117456140 - PB1D7 SINE Alu -5 115 12 7 614 702 185 89 0 chr12 3801484 3801619 -117455911 - B1_Mur4 SINE Alu 0 150 4 7 614 252 358 0 0 chr12 3801623 3801704 -117455826 - ID4 SINE ID 0 83 3 7 614 407 256 0 33 chr12 3801707 3801828 -117455702 - L1MC4 LINE L1 -444 7598 7482 7 614 601 258 0 0 chr12 3801829 3801957 -117455573 + ID_B1 SINE B4 84 211 -13 7 614 277 240 185 74 chr12 3802199 3802307 -117455223 + PB1D7 SINE Alu 1 120 0 7 614 533 220 241 12 chr12 3802941 3803111 -117454419 - ID_B1 SINE B4 -13 211 3 7 614 824 268 166 54 chr12 3803396 3803739 -117453791 - L1MB4 LINE L1 -124 6065 5668 7 614 614 165 148 8 chr12 3803739 3803867 -117453663 - B1F2 SINE Alu -3 146 1 7 614 824 262 165 56 chr12 3803867 3803957 -117453573 - L1MB4 LINE L1 -513 5667 5578 7 614 325 331 40 37 chr12 3804102 3804409 -117453121 - ORR1E LTR MaLR 0 370 66 7 614 835 181 14 7 chr12 3804413 3804552 -117452978 + B1_Mur2 SINE Alu 3 142 -7 7 614 186 236 24 0 chr12 3804977 3805024 -117452506 + MIRm SINE MIR 42 89 -179 7 614 659 176 0 16 chr12 3805102 3805223 -117452307 - B3 SINE B2 -97 119 1 7 614 344 250 24 24 chr12 3805234 3805316 -117452214 - ID2 SINE ID 0 83 2 7 614 227 255 140 67 chr12 3805519 3805683 -117451847 - L2c LINE L2 0 3387 3200 7 614 422 281 70 25 chr12 3806114 3806271 -117451259 - L3 LINE CR1 -8 4481 4318 7 614 27 62 0 0 chr12 3806466 3806514 -117451016 + GC_rich Low_complexity Low_complexity 1 48 0 7 614 29 0 0 0 chr12 3806782 3806811 -117450719 + GC_rich Low_complexity Low_complexity 1 29 0 7 614 281 264 0 82 chr12 3806861 3807099 -117450431 + G-rich Low_complexity Low_complexity 1 218 0 7 614 332 278 0 18 chr12 3806902 3807012 -117450518 + GA-rich Low_complexity Low_complexity 2 109 0 8 614 30 59 0 0 chr12 3807295 3807346 -117450184 + GC_rich Low_complexity Low_complexity 1 51 0 8 614 33 103 0 0 chr12 3807367 3807484 -117450046 + GC_rich Low_complexity Low_complexity 1 117 0 8 614 51 83 0 0 chr12 3807602 3807723 -117449807 + GC_rich Low_complexity Low_complexity 1 121 0 8 614 21 57 0 0 chr12 3807759 3807794 -117449736 + GC_rich Low_complexity Low_complexity 1 35 0 8 614 203 288 9 35 chr12 3807899 3808014 -117449516 + G-rich Low_complexity Low_complexity 6 117 0 8 614 186 143 0 0 chr12 3809321 3809356 -117448174 + (C)n Simple_repeat Simple_repeat 1 35 0 8 614 367 244 63 31 chr12 3809521 3809648 -117447882 + L3 LINE CR1 4356 4486 -3 8 614 253 276 36 95 chr12 3810806 3810890 -117446640 - PB1D10 SINE Alu -17 100 22 8 614 213 65 0 0 chr12 3810939 3810970 -117446560 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 614 473 139 21 80 chr12 3812087 3812275 -117445255 + GA-rich Low_complexity Low_complexity 1 177 0 8 614 228 35 0 0 chr12 3813023 3813052 -117444478 + (GTTTG)n Simple_repeat Simple_repeat 5 33 0 8 614 363 207 138 0 chr12 3813054 3813141 -117444389 - PB1D7 SINE Alu -8 112 14 8 614 295 198 145 24 chr12 3813688 3813771 -117443759 - RSINE1 SINE B4 0 165 73 8 614 552 150 200 40 chr12 3813788 3813913 -117443617 + B1_Mur4 SINE Alu 1 145 -5 8 614 252 0 0 0 chr12 3814020 3814048 -117443482 + (A)n Simple_repeat Simple_repeat 1 28 0 8 614 369 280 9 9 chr12 3814367 3814475 -117443055 + PB1D7 SINE Alu 4 111 -9 8 614 408 202 108 92 chr12 3814475 3814595 -117442935 + ID_B1 SINE B4 76 197 -27 8 614 251 297 60 43 chr12 3814842 3814958 -117442572 + ID_B1 SINE B4 55 172 -52 8 614 341 229 93 19 chr12 3814872 3814979 -117442551 + PB1D9 SINE Alu 6 120 0 8 614 198 0 0 0 chr12 3816535 3816557 -117440973 + (C)n Simple_repeat Simple_repeat 1 22 0 8 614 217 306 54 27 chr12 3816778 3816889 -117440641 - L2b LINE L2 -176 3199 3086 8 614 410 340 20 7 chr12 3817717 3817868 -117439662 + MIRc SINE MIR 2 154 -114 8 614 282 323 110 0 chr12 3818806 3818933 -117438597 - Tigger16a DNA Tigger -28 905 765 8 614 438 20 0 0 chr12 3819059 3819110 -117438420 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 614 305 335 6 0 chr12 3819136 3819300 -117438230 + (TG)n Simple_repeat Simple_repeat 2 166 0 8 614 366 23 0 0 chr12 3819339 3819382 -117438148 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 614 195 42 0 0 chr12 3819382 3819405 -117438125 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 614 209 194 0 0 chr12 3819611 3819647 -117437883 - L2b LINE L2 -12 3363 3328 8 614 262 227 84 11 chr12 3820612 3820722 -117436808 - L1MB7 LINE L1 -12 6172 6054 8 614 1434 45 79 0 chr12 3821042 3821201 -117436329 + B2_Mm1t SINE B2 2 160 -33 8 614 387 0 0 0 chr12 3821201 3821244 -117436286 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 8 614 1434 45 79 0 chr12 3821244 3821262 -117436268 + B2_Mm1t SINE B2 161 191 -2 8 614 1022 328 69 79 chr12 3821504 3822140 -117435390 - LTR41 LTR ERVL 0 768 142 8 614 950 161 0 0 chr12 3822140 3822283 -117435247 - B1_Mur4 SINE Alu -7 143 1 8 614 1022 328 69 79 chr12 3822283 3822381 -117435149 - LTR41 LTR ERVL -627 141 41 8 614 301 268 14 0 chr12 3822508 3822579 -117434951 + ID_B1 SINE B4 84 155 -69 8 614 606 256 0 0 chr12 3822579 3822700 -117434830 + B3A SINE B2 1 121 -77 8 614 210 197 60 90 chr12 3824295 3824362 -117433168 + L2a LINE L2 3362 3426 0 8 614 630 93 8 101 chr12 3824415 3824534 -117432996 + PB1D9 SINE Alu 9 116 -4 8 614 254 245 10 87 chr12 3824822 3824925 -117432605 + MIR SINE MIR 117 211 -51 8 614 329 336 56 18 chr12 3825048 3825216 -117432314 - MIR SINE MIR 0 262 93 8 614 341 203 337 43 chr12 3826474 3826601 -117430929 - RSINE1 SINE B4 0 165 2 8 614 418 103 26 0 chr12 3826645 3826723 -117430807 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 8 614 985 73 193 0 chr12 3826783 3826933 -117430597 - B2_Mm1a SINE B2 -13 180 2 8 614 719 270 65 96 chr12 3826933 3827240 -117430290 + MLT1D LTR MaLR 132 445 -60 8 614 1610 42 5 0 chr12 3827240 3827431 -117430099 + B2_Mm1a SINE B2 2 193 0 8 614 719 270 65 96 chr12 3827431 3827476 -117430054 + MLT1D LTR MaLR 446 473 -32 8 614 259 150 83 0 chr12 3827518 3827578 -117429952 - L1MCa LINE L1 -337 2345 2281 8 614 351 0 0 0 chr12 3827621 3827660 -117429870 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 614 397 232 0 11 chr12 3828151 3828254 -117429276 - L1MCa LINE L1 -849 1833 1757 8 614 655 237 8 8 chr12 3828270 3828402 -117429128 - B1F1 SINE Alu -13 136 5 8 614 823 139 50 14 chr12 3828453 3828592 -117428938 + B1_Mus1 SINE Alu 5 148 0 8 614 420 235 41 57 chr12 3828715 3828837 -117428693 - B4A SINE B4 -170 122 3 8 614 519 17 0 0 chr12 3828896 3828956 -117428574 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 614 436 238 9 0 chr12 3828956 3829061 -117428469 - L1MA5 LINE L1 -140 6160 6055 8 614 488 285 81 32 chr12 3829063 3829248 -117428282 + B3A SINE B2 1 194 -4 8 614 627 125 210 32 chr12 3829446 3829570 -117427960 + B1_Mur4 SINE Alu 5 150 0 8 614 514 314 88 112 chr12 3829591 3829726 -117427804 - L1MA5 LINE L1 -255 6045 5934 8 614 951 137 14 0 chr12 3829726 3829865 -117427665 - B1_Mur2 SINE Alu -7 142 2 8 614 542 314 88 112 chr12 3829865 3830184 -117427346 - L1MA5 LINE L1 -367 5933 5602 8 614 393 324 83 6 chr12 3830273 3830453 -117427077 - B3A SINE B2 -3 195 2 8 614 292 254 0 0 chr12 3830549 3830612 -117426918 - L1MCa LINE L1 -1606 1076 1014 8 614 623 168 8 25 chr12 3830613 3830735 -117426795 + B1_Mur1 SINE Alu 22 141 -8 8 614 231 114 0 0 chr12 3830735 3830770 -117426760 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 8 614 1313 76 0 0 chr12 3830806 3830990 -117426540 - B2_Mm1a SINE B2 -3 190 7 8 614 875 69 39 0 chr12 3830990 3831120 -117426410 + B1_Mm SINE Alu 13 147 0 8 614 276 243 45 103 chr12 3830991 3831147 -117426383 + B4A SINE B4 99 245 -47 8 614 348 161 0 0 chr12 3831147 3831209 -117426321 + GA-rich Low_complexity Low_complexity 2 63 0 8 614 604 239 35 21 chr12 3831217 3831362 -117426168 + B1F SINE Alu 2 148 -1 8 614 566 182 149 0 chr12 3831992 3832113 -117425417 + ID_B1 SINE B4 84 222 -2 8 614 428 316 44 7 chr12 3832136 3832273 -117425257 + ID_B1 SINE B4 13 154 -70 8 614 854 143 35 116 chr12 3832305 3832503 -117425027 - B3A SINE B2 -16 182 1 8 614 207 231 39 0 chr12 3835590 3835642 -117421888 + MIRc SINE MIR 66 119 -149 8 614 628 244 79 25 chr12 3836545 3836747 -117420783 - ID_B1 SINE B4 -10 214 2 8 614 542 361 58 0 chr12 3837119 3837360 -117420170 + MIRc SINE MIR 11 265 -3 8 614 333 346 23 8 chr12 3837982 3838113 -117419417 + MER5A DNA MER1_type 2 134 -55 8 614 246 321 50 58 chr12 3838472 3838611 -117418919 - MIRb SINE MIR -45 223 86 8 614 495 0 0 0 chr12 3838780 3838835 -117418695 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 614 395 118 13 0 chr12 3839155 3839231 -117418299 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 614 303 234 0 15 chr12 3839231 3839296 -117418234 - B3A SINE B2 -127 71 8 8 614 288 279 106 18 chr12 3840225 3840362 -117417168 - MIR SINE MIR -23 245 90 8 614 188 257 0 0 chr12 3840518 3840553 -117416977 + L2b LINE L2 3377 3411 -15 8 614 192 77 0 0 chr12 3840675 3840701 -117416829 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 8 614 1222 48 7 0 chr12 3840702 3840848 -117416682 - B1_Mus1 SINE Alu 0 148 2 8 614 208 295 0 143 chr12 3840871 3840962 -117416568 - L2c LINE L2 -16 3371 3294 8 614 354 346 105 21 chr12 3841240 3841479 -117416051 + MamSINE1 SINE tRNA 30 288 -2 8 614 213 271 14 14 chr12 3841722 3841793 -117415737 + MIRb SINE MIR 96 166 -102 8 614 506 248 17 0 chr12 3841828 3841945 -117415585 + ID_B1 SINE B4 98 216 -8 8 614 381 266 62 39 chr12 3841829 3841958 -117415572 + B1F2 SINE Alu 18 149 0 8 614 294 277 88 48 chr12 3842335 3842360 -117415170 + ID_B1 SINE B4 66 195 -29 8 614 397 230 140 0 chr12 3842360 3842460 -117415070 + B1F SINE Alu 4 117 -32 8 614 1264 28 0 7 chr12 3842573 3842719 -117414811 - B1_Mus2 SINE Alu -1 146 2 8 614 633 61 0 0 chr12 3842797 3842879 -117414651 + (TTTTC)n Simple_repeat Simple_repeat 5 86 0 8 614 264 276 39 26 chr12 3842880 3842958 -117414572 - PB1D10 SINE Alu -2 115 37 8 614 269 300 0 0 chr12 3842998 3843068 -117414462 + PB1D10 SINE Alu 48 117 0 8 614 250 309 139 38 chr12 3843618 3843827 -117413703 - MIRb SINE MIR -35 233 4 8 614 273 188 0 34 chr12 3843857 3843945 -117413585 + C-rich Low_complexity Low_complexity 3 87 0 8 614 494 346 28 0 chr12 3844754 3844933 -117412597 - ID_B1 SINE B4 -27 197 14 8 614 313 286 13 0 chr12 3846796 3846873 -117410657 + ID2 SINE ID 2 79 -4 8 614 213 188 42 0 chr12 3846935 3846983 -117410547 - B1_Mm SINE Alu -1 146 97 8 614 1242 106 0 0 chr12 3846983 3847350 -117410180 + (TC)n Simple_repeat Simple_repeat 1 367 0 8 614 312 158 0 0 chr12 3847352 3847409 -117410121 + CT-rich Low_complexity Low_complexity 2 58 0 8 614 1218 90 0 0 chr12 3847417 3847595 -117409935 + (TC)n Simple_repeat Simple_repeat 2 179 0 8 614 254 135 0 55 chr12 3847595 3847641 -117409889 - MT2B LTR ERVL -361 240 196 8 614 457 228 20 0 chr12 3847678 3847779 -117409751 + B4A SINE B4 1 103 -189 8 614 396 305 56 43 chr12 3847823 3847984 -117409546 + RSINE1 SINE B4 3 165 0 8 614 728 94 0 0 chr12 3848023 3848129 -117409401 + B2_Mm2 SINE B2 1 106 -89 8 614 240 164 0 0 chr12 3848133 3848200 -117409330 + A-rich Low_complexity Low_complexity 1 67 0 9 614 842 192 13 20 chr12 3848272 3848421 -117409109 - B1_Mur3 SINE Alu -1 148 1 9 614 242 282 115 0 chr12 3848424 3848502 -117409028 + B4A SINE B4 202 288 -4 8 614 299 272 237 0 chr12 3848588 3848702 -117408828 + ID_B1 SINE B4 76 216 -8 9 614 560 90 59 20 chr12 3848710 3848812 -117408718 + B1_Mus2 SINE Alu 41 146 -1 9 614 189 0 0 0 chr12 3848827 3848848 -117408682 + (TAA)n Simple_repeat Simple_repeat 1 21 0 9 614 486 0 0 0 chr12 3848888 3848942 -117408588 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 614 384 279 66 99 chr12 3848942 3848962 -117408568 + B1F SINE Alu 4 23 -126 9 614 180 0 0 0 chr12 3848962 3848982 -117408548 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 9 614 1370 89 0 11 chr12 3848983 3849165 -117408365 - B2_Mm2 SINE B2 -14 181 2 9 614 452 279 66 99 chr12 3849165 3849293 -117408237 + B1_Mur2 SINE Alu 16 149 0 9 614 291 296 12 36 chr12 3849367 3849451 -117408079 - ID4_ SINE ID 0 83 2 9 614 243 273 101 11 chr12 3851072 3851161 -117406369 + MIRb SINE MIR 14 110 -158 9 614 198 325 12 24 chr12 3851302 3851384 -117406146 + MIRc SINE MIR 116 196 -72 9 614 408 229 156 0 chr12 3851621 3851743 -117405787 + ID_B1 SINE B4 17 157 -67 9 614 726 118 142 0 chr12 3851746 3851873 -117405657 + B1_Mur4 SINE Alu 6 150 0 9 614 189 0 0 0 chr12 3851876 3851897 -117405633 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 9 614 21 0 0 0 chr12 3851903 3851924 -117405606 + AT_rich Low_complexity Low_complexity 1 21 0 9 614 1263 48 0 0 chr12 3851931 3852078 -117405452 + B1_Mus2 SINE Alu 1 147 0 9 614 371 139 11 122 chr12 3852086 3852176 -117405354 + ID_B1 SINE B4 145 224 0 9 614 384 91 0 0 chr12 3852221 3852276 -117405254 - B2_Mm2 SINE B2 -94 101 47 9 614 1206 78 78 0 chr12 3852307 3852473 -117405057 - B2_Mm1t SINE B2 -14 179 1 9 614 656 223 40 7 chr12 3852492 3852641 -117404889 + B3 SINE B2 2 155 -61 9 614 519 95 0 0 chr12 3853317 3853391 -117404139 + (TG)n Simple_repeat Simple_repeat 1 74 0 9 614 411 38 0 0 chr12 3853391 3853444 -117404086 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 614 346 170 261 78 chr12 3853444 3853559 -117403971 - B1F2 SINE Alu -12 137 2 9 614 959 209 23 45 chr12 3853589 3853809 -117403721 - B3 SINE B2 0 216 2 9 614 264 212 0 0 chr12 3853814 3853880 -117403650 + CT-rich Low_complexity Low_complexity 4 69 0 9 614 766 149 109 22 chr12 3853889 3854026 -117403504 - B1_Mur3 SINE Alu 0 149 1 9 614 1356 66 54 5 chr12 3854047 3854231 -117403299 + B2_Mm2 SINE B2 3 195 0 9 614 242 234 94 0 chr12 3854940 3855004 -117402526 - B1_Mur2 SINE Alu -7 142 73 9 614 228 266 292 46 chr12 3855120 3855227 -117402303 + RSINE1 SINE B4 4 145 -20 9 614 212 0 36 0 chr12 3855227 3855255 -117402275 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 614 228 266 292 46 chr12 3855255 3855277 -117402253 + RSINE1 SINE B4 146 165 0 9 614 592 152 188 8 chr12 3855512 3855645 -117401885 + ID_B1 SINE B4 68 224 0 9 614 239 0 32 0 chr12 3857003 3857034 -117400496 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 9 614 417 281 100 15 chr12 3857035 3857046 -117400484 - B4 SINE B4 -73 219 145 9 614 582 209 9 18 chr12 3857046 3857158 -117400372 - B1_Mur2 SINE Alu -38 111 1 9 614 1052 266 110 3 chr12 3857782 3858099 -117399431 + MTEa LTR MaLR 1 351 -28 9 614 207 0 0 0 chr12 3858110 3858133 -117399397 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 614 199 284 198 18 chr12 3858745 3858856 -117398674 - L2b LINE L2 -36 3339 3209 9 614 300 53 0 0 chr12 3859155 3859193 -117398337 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 9 614 1251 42 0 0 chr12 3859195 3859338 -117398192 - B1_Mus2 SINE Alu -4 143 1 9 614 517 267 0 8 chr12 3859340 3859461 -117398069 - PB1D7 SINE Alu 0 120 1 9 614 220 182 36 0 chr12 3859472 3859527 -117398003 + T-rich Low_complexity Low_complexity 4 60 0 9 614 344 231 113 19 chr12 3859560 3859666 -117397864 - MER20 DNA MER1_type -77 142 27 9 614 1484 66 16 0 chr12 3860489 3860672 -117396858 - B2_Mm2 SINE B2 -9 186 1 9 614 747 254 9 83 chr12 3860929 3861157 -117396373 + ID_B1 SINE B4 13 223 -1 9 614 245 216 77 51 chr12 3861222 3861300 -117396230 + ID4 SINE ID 1 80 -3 9 614 458 305 15 0 chr12 3862631 3862762 -117394768 + ID_B1 SINE B4 81 213 -11 9 614 914 192 109 0 chr12 3862767 3862960 -117394570 - B3 SINE B2 0 216 3 9 614 469 227 0 0 chr12 3863002 3863090 -117394440 + PB1D9 SINE Alu 18 105 -15 9 614 256 304 37 67 chr12 3863180 3863199 -117394331 - B2_Mm2 SINE B2 -62 133 4 9 614 567 217 35 0 chr12 3863199 3863314 -117394216 - RSINE1 SINE B4 -42 123 5 9 614 662 244 75 0 chr12 3863368 3863528 -117394002 + ID_B1 SINE B4 52 223 -1 9 614 940 189 15 70 chr12 3863542 3863741 -117393789 - B2_Mm2 SINE B2 -6 189 2 9 614 265 253 0 60 chr12 3863780 3863864 -117393666 - PB1D9 SINE Alu 0 120 42 9 614 315 0 0 0 chr12 3863890 3863925 -117393605 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 614 1128 72 0 0 chr12 3863925 3864063 -117393467 - B1_Mus1 SINE Alu -9 139 2 9 614 275 284 89 59 chr12 3864095 3864196 -117393334 + ID_B1 SINE B4 84 187 -37 9 614 412 259 145 24 chr12 3864287 3864430 -117393100 - ID_B1 SINE B4 -69 223 71 9 614 276 100 0 0 chr12 3864613 3864653 -117392877 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 614 987 93 0 0 chr12 3864936 3865076 -117392454 + (ATG)n Simple_repeat Simple_repeat 3 142 0 9 614 1159 118 0 0 chr12 3865079 3865248 -117392282 - B2_Mm2 SINE B2 -26 169 1 9 614 250 278 160 32 chr12 3865458 3865614 -117391916 - B2_Mm2 SINE B2 -18 177 2 9 614 315 189 25 127 chr12 3865505 3865616 -117391914 - B4 SINE B4 -42 123 1 9 614 879 265 9 40 chr12 3865617 3865845 -117391685 - ID_B1 SINE B4 0 224 4 9 614 559 286 34 95 chr12 3866371 3866665 -117390865 + MER102a DNA MER1_type 35 310 -20 9 614 222 306 0 0 chr12 3866937 3867009 -117390521 - MIRc SINE MIR -8 260 189 9 614 185 394 88 0 chr12 3867205 3867342 -117390188 - MIRb SINE MIR -17 251 103 9 614 1207 41 14 0 chr12 3867343 3867488 -117390042 + B1_Mus2 SINE Alu 1 147 0 9 614 792 158 64 7 chr12 3867572 3867712 -117389818 - B1_Mur1 SINE Alu 0 149 2 9 614 489 219 0 229 chr12 3867715 3867801 -117389729 - ID_B1 SINE B4 -68 156 89 9 614 444 37 0 0 chr12 3867801 3867855 -117389675 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 614 574 275 36 7 chr12 3867863 3868002 -117389528 - RSINE1 SINE B4 -19 146 4 9 614 489 219 0 229 chr12 3868002 3868107 -117389423 - ID SINE ID -136 88 2 9 614 351 252 137 8 chr12 3869049 3869173 -117388357 - ID_B1 SINE B4 -34 190 51 9 614 315 333 43 17 chr12 3869221 3869337 -117388193 + L2b LINE L2 3257 3375 0 9 614 480 264 32 0 chr12 3869789 3869914 -117387616 + ID_B1 SINE B4 81 209 -15 9 614 180 294 139 12 chr12 3870464 3870550 -117386980 + MIRm SINE MIR 19 115 -161 9 614 1067 102 0 7 chr12 3870600 3870748 -117386782 + B1_Mus1 SINE Alu 2 148 0 9 614 234 150 0 0 chr12 3871308 3871348 -117386182 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 9 614 661 176 67 0 chr12 3872135 3872254 -117385276 + B1_Mur3 SINE Alu 11 137 -12 9 614 369 0 0 0 chr12 3874844 3874885 -117382645 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 9 614 1123 62 0 27 chr12 3874885 3875023 -117382507 - B1_Mus1 SINE Alu -10 138 1 9 614 291 28 0 0 chr12 3875153 3875189 -117382341 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 614 30 0 0 0 chr12 3875228 3875258 -117382272 + AT_rich Low_complexity Low_complexity 1 30 0 9 614 31 0 0 24 chr12 3875372 3875388 -117382142 + AT_rich Low_complexity Low_complexity 1 16 0 9 614 1233 55 0 0 chr12 3875388 3875534 -117381996 - B1_Mus2 SINE Alu 0 147 2 9 614 31 0 0 24 chr12 3875534 3875559 -117381971 + AT_rich Low_complexity Low_complexity 1 25 0 9 614 954 158 10 57 chr12 3875591 3875785 -117381745 - B2_Mm2 SINE B2 -9 186 2 9 614 693 230 7 0 chr12 3875786 3875925 -117381605 + B1_Mur1 SINE Alu 10 149 0 9 614 249 98 0 0 chr12 3876491 3876532 -117380998 + (TCTTG)n Simple_repeat Simple_repeat 3 43 0 9 614 814 262 48 0 chr12 3876545 3876751 -117380779 - B3 SINE B2 0 216 1 9 614 216 0 0 0 chr12 3876966 3876990 -117380540 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 614 278 233 17 0 chr12 3876995 3877055 -117380475 - ID_B1 SINE B4 -47 177 117 9 614 385 205 39 0 chr12 3877598 3877676 -117379854 + ID2 SINE ID 2 82 -1 9 614 493 173 28 46 chr12 3877779 3877888 -117379642 + B1_Mus2 SINE Alu 7 113 -7 9 614 408 270 0 10 chr12 3878677 3878778 -117378752 - PB1D10 SINE Alu -3 114 15 9 614 935 171 73 0 chr12 3878781 3878945 -117378585 + B2_Mm1t SINE B2 4 179 -14 9 614 276 140 0 39 chr12 3878992 3879044 -117378486 + B2_Mm2 SINE B2 47 96 -99 9 614 311 266 123 20 chr12 3879120 3879266 -117378264 - RSINE1 SINE B4 -3 162 2 9 614 312 333 25 41 chr12 3879269 3879391 -117378139 - PB1D7 SINE Alu 0 120 1 9 614 648 255 0 0 chr12 3879507 3879648 -117377882 + B1F SINE Alu 1 141 -8 9 614 491 313 24 6 chr12 3879978 3880145 -117377385 - ID_B1 SINE B4 -19 205 36 9 614 318 262 18 18 chr12 3880296 3880405 -117377125 - L1M5 LINE L1 -774 5466 5358 1 614 364 221 0 11 chr12 3881033 3881120 -117376410 - B1F SINE Alu -1 148 63 1 614 459 324 20 26 chr12 3881310 3881443 -117376087 + RSINE1 SINE B4 15 146 -19 1 614 228 35 0 0 chr12 3881443 3881472 -117376058 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 1 614 459 324 20 26 chr12 3881472 3881490 -117376040 + RSINE1 SINE B4 147 164 -1 1 614 180 214 0 23 chr12 3881777 3881820 -117375710 + MIR SINE MIR 30 71 -137 1 614 663 233 13 46 chr12 3882146 3882299 -117375231 + B1_Mur1 SINE Alu 1 148 -1 1 614 541 254 79 63 chr12 3882341 3882530 -117375000 + B3A SINE B2 6 197 -1 1 614 845 198 41 46 chr12 3882554 3882750 -117374780 + B3 SINE B2 1 195 -21 1 614 580 295 24 6 chr12 3882761 3882928 -117374602 + ID_B1 SINE B4 2 171 -53 1 614 451 260 15 73 chr12 3882926 3882944 -117374586 + ID_B1 SINE B4 69 197 -27 1 614 527 235 17 34 chr12 3882944 3883063 -117374467 + B1F2 SINE Alu 3 119 -30 1 614 282 164 34 2 chr12 3883077 3883150 -117374380 + B1F SINE Alu 52 123 -24 1 614 319 138 75 149 chr12 3883170 3883264 -117374266 + B1F SINE Alu 63 149 0 1 614 191 61 39 58 chr12 3883266 3883318 -117374212 + A-rich Low_complexity Low_complexity 2 52 0 1 614 487 276 7 54 chr12 3884222 3884370 -117373160 - ID_B1 SINE B4 0 224 88 1 614 238 200 114 0 chr12 3884737 3884807 -117372723 + PB1 SINE Alu 50 127 0 1 614 259 266 147 39 chr12 3886970 3887099 -117370431 - MER5B DNA MER1_type -5 173 31 1 614 848 57 197 0 chr12 3887116 3887238 -117370292 - B1_Mus2 SINE Alu 0 147 2 1 614 451 254 151 17 chr12 3888260 3888432 -117369098 + MER3 DNA MER1_type 15 209 0 1 614 261 266 47 0 chr12 3889219 3889283 -117368247 + ID_B1 SINE B4 132 198 -26 1 614 219 216 0 19 chr12 3889680 3889732 -117367798 - PB1D10 SINE Alu -2 115 65 1 614 333 264 66 88 chr12 3889686 3889823 -117367707 - ID_B1 SINE B4 -7 217 84 1 614 288 266 38 24 chr12 3890027 3890117 -117367413 - MIRc SINE MIR -93 183 89 1 614 225 0 0 0 chr12 3890662 3890687 -117366843 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 614 342 0 0 0 chr12 3890692 3890730 -117366800 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 614 499 227 76 0 chr12 3890846 3890965 -117366565 - ID_B1 SINE B4 -7 217 90 1 614 206 187 0 26 chr12 3891701 3891778 -117365752 + C-rich Low_complexity Low_complexity 2 76 0 1 614 277 227 124 0 chr12 3894167 3894264 -117363266 + PB1D7 SINE Alu 4 112 -8 1 614 440 193 164 9 chr12 3894433 3894543 -117362987 - B1_Mur2 SINE Alu -1 148 22 1 614 381 282 0 139 chr12 3895069 3895111 -117362419 + ID_B1 SINE B4 93 134 -90 1 614 1088 48 14 20 chr12 3895111 3895259 -117362271 + B1_Mus2 SINE Alu 1 147 0 1 614 381 282 0 139 chr12 3895259 3895360 -117362170 + ID_B1 SINE B4 135 216 -8 1 614 403 223 53 0 chr12 3896453 3896547 -117360983 + B1F1 SINE Alu 45 143 -6 1 614 735 231 24 57 chr12 3898059 3898270 -117359260 - B4A SINE B4 0 292 89 1 614 664 182 129 0 chr12 3898289 3898421 -117359109 - B1_Mur4 SINE Alu 0 150 2 1 614 816 55 0 0 chr12 3898422 3898532 -117358998 + (TTTCC)n Simple_repeat Simple_repeat 3 112 0 1 614 1419 72 0 0 chr12 3898532 3898713 -117358817 - B2_Mm1t SINE B2 -12 181 1 1 614 236 268 68 27 chr12 3898964 3899037 -117358493 - B1F1 SINE Alu 0 149 74 1 614 261 242 9 128 chr12 3900442 3900463 -117357067 + MT2B LTR ERVL 145 152 -449 1 614 453 164 86 52 chr12 3900463 3900579 -117356951 + PB1D9 SINE Alu 1 120 0 1 614 250 203 176 0 chr12 3900636 3900710 -117356820 + ID_B1 SINE B4 136 222 -2 1 614 762 102 133 0 chr12 3900740 3900868 -117356662 + B1_Mus2 SINE Alu 3 147 0 1 614 690 136 0 0 chr12 3900868 3900900 -117356630 + (A)n Simple_repeat Simple_repeat 1 32 0 1 614 1203 40 0 0 chr12 3900900 3901048 -117356482 + B1_Mus1 SINE Alu 1 148 0 1 614 690 136 0 0 chr12 3901048 3901085 -117356445 + (A)n Simple_repeat Simple_repeat 1 37 0 1 614 1172 34 7 0 chr12 3901085 3901232 -117356298 + B1_Mus1 SINE Alu 1 148 0 1 614 690 136 0 0 chr12 3901232 3901279 -117356251 + (A)n Simple_repeat Simple_repeat 1 47 0 1 614 476 133 0 12 chr12 3903282 3903366 -117354164 + (TTTTC)n Simple_repeat Simple_repeat 1 83 0 1 614 1093 91 85 0 chr12 3903366 3903542 -117353988 - B2_Mm1t SINE B2 -1 192 2 1 614 1128 55 7 0 chr12 3903794 3903940 -117353590 + B1_Mm SINE Alu 1 147 0 1 614 408 55 0 0 chr12 3904573 3904628 -117352902 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 614 1078 70 0 0 chr12 3904629 3904771 -117352759 - B1_Mus1 SINE Alu -6 142 1 1 614 1156 86 29 0 chr12 3904917 3905091 -117352439 - B2_Mm2 SINE B2 0 195 17 1 614 369 60 0 0 chr12 3905155 3905176 -117352354 + (T)n Simple_repeat Simple_repeat 1 21 0 1 614 1147 68 0 0 chr12 3905176 3905323 -117352207 - B1_Mus2 SINE Alu 0 147 1 1 614 369 60 0 0 chr12 3905323 3905351 -117352179 + (T)n Simple_repeat Simple_repeat 1 28 0 1 614 482 232 185 29 chr12 3905875 3906048 -117351482 - B3 SINE B2 -16 200 1 1 614 194 0 39 0 chr12 3907788 3907814 -117349716 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 614 23 33 0 0 chr12 3910294 3910324 -117347206 + AT_rich Low_complexity Low_complexity 1 30 0 1 614 24 32 0 0 chr12 3912679 3912710 -117344820 + AT_rich Low_complexity Low_complexity 1 31 0 1 614 547 194 26 86 chr12 3914989 3915141 -117342389 - B4A SINE B4 -148 144 2 1 614 1033 30 0 15 chr12 3916290 3916425 -117341105 + (TAGA)n Simple_repeat Simple_repeat 4 136 0 1 614 480 280 42 0 chr12 3916577 3916720 -117340810 + RSINE1 SINE B4 3 151 -14 1 614 1251 57 90 0 chr12 3917126 3917303 -117340227 + B2_Mm2 SINE B2 2 194 -1 1 614 333 0 0 0 chr12 3917327 3917364 -117340166 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 614 24 0 0 85 chr12 3918269 3918293 -117339237 + AT_rich Low_complexity Low_complexity 1 21 0 1 614 1175 48 0 0 chr12 3918293 3918439 -117339091 + B1_Mus1 SINE Alu 3 148 0 1 614 24 0 0 85 chr12 3918439 3918461 -117339069 + AT_rich Low_complexity Low_complexity 1 22 0 1 614 550 249 20 79 chr12 3918747 3918926 -117338604 - RSINE1 SINE B4 0 165 5 1 614 468 135 189 19 chr12 3919024 3919130 -117338400 - B1_Mur2 SINE Alu -1 148 25 1 614 302 42 0 41 chr12 3919234 3919283 -117338247 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 1 614 434 272 35 0 chr12 3919502 3919616 -117337914 + RSINE1 SINE B4 25 142 -23 1 614 327 218 115 0 chr12 3919733 3919811 -117337719 - B1_Mur1 SINE Alu 0 149 63 1 614 1032 37 7 0 chr12 3919913 3920048 -117337482 - B1_Mus1 SINE Alu 0 148 13 1 614 260 220 45 107 chr12 3920065 3920177 -117337353 + B2_Mm2 SINE B2 77 181 -14 1 614 358 181 209 0 chr12 3920489 3920594 -117336936 - B1_Mur3 SINE Alu -20 129 3 1 614 233 241 17 0 chr12 3920544 3920602 -117336928 - ID_B1 SINE B4 -90 134 76 1 614 638 287 42 40 chr12 3920763 3920961 -117336569 + B3A SINE B2 1 195 0 1 614 302 173 18 55 chr12 3920963 3920981 -117336549 + polypurine Low_complexity Low_complexity 3 19 0 1 614 1131 55 0 0 chr12 3920981 3921126 -117336404 + B1_Mus2 SINE Alu 3 147 0 1 614 302 173 18 55 chr12 3921126 3921217 -117336313 + GA-rich Low_complexity Low_complexity 20 108 0 1 614 282 327 19 19 chr12 3921533 3921639 -117335891 - L1MC LINE L1 -2239 5643 5538 1 614 307 405 69 14 chr12 3922072 3922290 -117335240 - L1M5 LINE L1 -1226 4920 4691 1 614 317 272 0 52 chr12 3922513 3922610 -117334920 - B1_Mur2 SINE Alu -47 102 11 1 614 30 0 0 0 chr12 3922610 3922640 -117334890 + AT_rich Low_complexity Low_complexity 1 30 0 1 614 1072 88 0 0 chr12 3922640 3922787 -117334743 + B1_Mus2 SINE Alu 1 147 0 1 614 222 37 0 0 chr12 3922863 3922890 -117334640 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 614 1023 66 0 0 chr12 3922891 3923027 -117334503 - B1_Mus1 SINE Alu -12 136 1 1 614 353 274 118 0 chr12 3923037 3923139 -117334391 - ID_B1 SINE B4 -6 218 105 1 614 218 287 92 0 chr12 3923068 3923155 -117334375 - B1_Mus1 SINE Alu -49 99 5 1 614 291 296 38 50 chr12 3923187 3923347 -117334183 - RLTR12B LTR ERVK -4 524 367 1 614 618 212 53 63 chr12 3923412 3923618 -117333912 - RLTR12B LTR ERVK -278 250 47 1 614 380 269 57 9 chr12 3923830 3923935 -117333595 - ID_B1 SINE B4 -9 215 106 1 614 1243 219 77 102 chr12 3923949 3924351 -117333179 - RMER4A LTR ERVK -2 464 73 1 614 383 254 30 150 chr12 3924940 3925107 -117332423 + B4 SINE B4 77 223 -69 1 614 838 115 14 28 chr12 3924965 3925108 -117332422 + B1_Mur4 SINE Alu 10 150 0 1 614 626 228 6 0 chr12 3925108 3925266 -117332264 + GA-rich Low_complexity Low_complexity 2 160 0 1 614 441 288 65 43 chr12 3925517 3925702 -117331828 - B3A SINE B2 -9 189 1 1 614 690 179 56 21 chr12 3925721 3925864 -117331666 - B1_Mur2 SINE Alu -1 148 1 1 614 443 223 91 15 chr12 3925865 3925997 -117331533 - B1_Mur1 SINE Alu -5 144 3 1 614 580 232 5 38 chr12 3926023 3926186 -117331344 - ID_B1 SINE B4 -60 232 81 1 614 1092 59 0 0 chr12 3926624 3926760 -117330770 - B1_Mus1 SINE Alu -12 136 1 1 614 443 295 41 41 chr12 3927022 3927167 -117330363 - B4A SINE B4 -92 200 56 1 614 1182 109 5 20 chr12 3927218 3927414 -117330116 + B2_Mm2 SINE B2 1 193 -2 1 614 1132 234 100 68 chr12 3927417 3927592 -117329938 + RMER4B LTR ERVK 30 199 -386 1 614 1109 55 7 0 chr12 3927592 3927695 -117329835 - B1_Mm SINE Alu 0 147 45 1 614 207 0 0 0 chr12 3927695 3927718 -117329812 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 1 614 1109 55 7 0 chr12 3927718 3927760 -117329770 - B1_Mm SINE Alu -103 44 2 1 614 1132 239 90 83 chr12 3927760 3928035 -117329495 + RMER4B LTR ERVK 200 565 -46 1 614 964 48 0 0 chr12 3928032 3928156 -117329374 + B1_Mus1 SINE Alu 13 136 -12 1 614 207 0 0 0 chr12 3928156 3928179 -117329351 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 1 614 210 324 0 13 chr12 3928337 3928412 -117329118 + B4 SINE B4 3 76 -216 1 614 584 195 144 23 chr12 3929376 3929549 -117327981 - B3 SINE B2 -19 197 4 1 614 822 169 0 27 chr12 3929577 3929723 -117327807 - B1_Mus1 SINE Alu -6 142 1 1 614 192 152 0 0 chr12 3929740 3929773 -117327757 + GA-rich Low_complexity Low_complexity 2 34 0 1 614 499 214 0 19 chr12 3929898 3930003 -117327527 + B1F2 SINE Alu 42 144 -5 1 614 561 299 58 11 chr12 3930020 3930209 -117327321 + B3A SINE B2 1 198 0 1 614 287 269 191 12 chr12 3930628 3930790 -117326740 + L1M4 LINE L1 5638 5828 -350 1 614 879 255 14 0 chr12 3930790 3931006 -117326524 + ID_B1 SINE B4 3 221 -3 1 614 747 244 55 25 chr12 3931032 3931234 -117326296 + B3 SINE B2 3 210 -6 1 76 644 285 26 7 chr12 3932075 3932227 -117325303 - RSINE1 SINE B4 0 165 11 1 615 326 268 17 43 chr12 3932583 3932700 -117324830 - PB1D10 SINE Alu 0 117 4 1 615 283 248 105 24 chr12 3932806 3932930 -117324600 - HAL1 LINE L1 -349 2158 2025 1 615 260 287 42 42 chr12 3933004 3933124 -117324406 + L2a LINE L2 3221 3340 -86 1 615 870 189 221 168 chr12 3933219 3933668 -117323862 + MT2B LTR ERVL 1 538 -63 1 615 488 252 87 0 chr12 3933681 3933808 -117323722 - B4A SINE B4 -142 150 13 1 615 232 216 98 0 chr12 3933830 3933881 -117323649 - PB1D10 SINE Alu -8 109 54 1 615 269 299 211 0 chr12 3933836 3933889 -117323641 - ID_B1 SINE B4 -45 179 2 1 615 311 214 85 53 chr12 3933889 3933983 -117323547 - B2_Mm2 SINE B2 -97 98 2 1 615 316 227 30 20 chr12 3933983 3934077 -117323453 - RSINE1 SINE B4 -193 99 3 1 615 234 336 76 9 chr12 3934077 3934180 -117323350 - PB1D10 SINE Alu -7 110 1 1 615 333 339 71 16 chr12 3934180 3934223 -117323307 - ID SINE ID -137 87 38 1 615 889 301 27 98 chr12 3934228 3934294 -117323236 + MTE2b LTR MaLR 1 70 -309 1 615 1765 188 30 8 chr12 3934294 3934658 -117322872 - ORR1D1 LTR MaLR 0 374 3 1 615 889 301 27 98 chr12 3934658 3934896 -117322634 + MTE2b LTR MaLR 71 283 -96 1 615 253 0 54 0 chr12 3934896 3934933 -117322597 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 615 1098 37 0 0 chr12 3934933 3935067 -117322463 - B1_Mus1 SINE Alu -10 138 5 1 615 889 301 27 98 chr12 3935067 3935111 -117322419 + MTE2b LTR MaLR 284 323 -56 1 615 464 269 130 7 chr12 3935111 3935257 -117322273 - RSINE1 SINE B4 0 165 2 1 615 889 301 27 98 chr12 3935257 3935311 -117322219 + MTE2b LTR MaLR 324 375 -4 1 615 1299 85 27 0 chr12 3935472 3935660 -117321870 - B2_Mm2 SINE B2 -2 193 1 1 615 362 91 35 43 chr12 3935773 3935888 -117321642 + A-rich Low_complexity Low_complexity 2 115 0 1 615 1116 68 7 0 chr12 3936045 3936191 -117321339 + B1_Mm SINE Alu 1 147 0 1 615 206 32 32 0 chr12 3936194 3936225 -117321305 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 615 764 304 179 11 chr12 3937208 3937629 -117319901 + ORR1E-int LTR MaLR 822 1348 -232 1 615 237 33 0 0 chr12 3937629 3937659 -117319871 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 615 764 307 96 15 chr12 3937659 3937844 -117319686 + ORR1E-int LTR MaLR 1349 1552 -28 1 615 704 264 97 79 chr12 3937825 3938167 -117319363 + ORR1E LTR MaLR 7 354 -5 1 615 264 122 0 0 chr12 3938302 3938343 -117319187 + (TTCCC)n Simple_repeat Simple_repeat 1 41 0 1 615 992 168 15 44 chr12 3938343 3938548 -117318982 + URR1B DNA MER1_type 27 225 0 1 615 682 351 74 18 chr12 3938557 3938893 -117318637 + MLT1G LTR MaLR 224 578 -13 1 615 552 164 9 46 chr12 3938972 3939081 -117318449 - ID_B1 SINE B4 -2 222 118 1 615 230 347 0 39 chr12 3939121 3939199 -117318331 - PB1 SINE Alu -52 75 1 1 615 261 265 40 86 chr12 3939221 3939360 -117318170 - L1MB5 LINE L1 -122 6052 5918 1 615 355 257 50 0 chr12 3939360 3939461 -117318069 + PB1D10 SINE Alu 2 107 -10 1 615 373 226 438 38 chr12 3939461 3939617 -117317913 - L1MB5 LINE L1 -257 5917 5701 1 615 1032 85 0 0 chr12 3939637 3939778 -117317752 - B1_Mus2 SINE Alu 0 147 7 1 615 230 245 38 0 chr12 3939849 3939902 -117317628 - L1MB5 LINE L1 -531 5653 5599 1 615 545 298 34 53 chr12 3939947 3940153 -117317377 - B4A SINE B4 0 292 91 1 615 24 0 0 0 chr12 3940235 3940259 -117317271 + AT_rich Low_complexity Low_complexity 1 24 0 1 615 362 354 12 64 chr12 3940273 3940335 -117317195 - RSINE1 SINE B4 0 165 105 1 615 1333 69 16 5 chr12 3940335 3940524 -117317006 + B2_Mm2 SINE B2 1 191 -4 1 615 362 354 12 64 chr12 3940524 3940633 -117316897 - RSINE1 SINE B4 -61 104 3 1 615 1183 59 95 0 chr12 3940652 3940821 -117316709 + B2_Mm2 SINE B2 2 186 -9 1 615 363 74 14 81 chr12 3940861 3940917 -117316613 + B1_Mm SINE Alu 79 132 -15 1 615 1127 56 7 0 chr12 3940917 3941061 -117316469 + B1_Mm SINE Alu 3 147 0 1 615 363 74 14 81 chr12 3941061 3941078 -117316452 + B1_Mm SINE Alu 133 147 0 1 615 692 254 10 57 chr12 3941167 3941359 -117316171 - B3A SINE B2 -14 184 2 1 615 714 212 0 7 chr12 3941412 3941559 -117315971 - B1_Mur1 SINE Alu -3 146 1 1 615 457 295 23 0 chr12 3941566 3941695 -117315835 - B1F SINE Alu -7 142 11 1 615 240 207 0 0 chr12 3941795 3941853 -117315677 + A-rich Low_complexity Low_complexity 1 58 0 1 615 198 0 0 0 chr12 3942793 3942815 -117314715 + (T)n Simple_repeat Simple_repeat 1 22 0 1 615 1101 55 14 0 chr12 3942815 3942960 -117314570 - B1_Mus2 SINE Alu 0 147 1 1 615 652 54 21 0 chr12 3943187 3943280 -117314250 + (TCTCC)n Simple_repeat Simple_repeat 3 97 0 1 615 2287 149 48 67 chr12 3943327 3943731 -117313799 - RMER4A LTR ERVK 0 466 59 1 615 1209 62 7 0 chr12 3943731 3943877 -117313653 + B1_Mus1 SINE Alu 2 148 0 1 615 2287 149 48 67 chr12 3943877 3943889 -117313641 - RMER4A LTR ERVK -408 58 58 1 615 870 92 21 7 chr12 3943889 3944032 -117313498 + (GAAA)n Simple_repeat Simple_repeat 3 147 0 1 615 2287 149 48 67 chr12 3944032 3944089 -117313441 - RMER4A LTR ERVK -408 58 1 1 615 386 301 43 0 chr12 3944106 3944199 -117313331 - ID_B1 SINE B4 -127 97 1 1 615 228 255 0 18 chr12 3944199 3944255 -117313275 + CT-rich Low_complexity Low_complexity 1 55 0 1 615 296 244 302 0 chr12 3944255 3944341 -117313189 - PB1D10 SINE Alu -5 112 1 1 615 227 245 0 0 chr12 3944480 3944529 -117313001 + C-rich Low_complexity Low_complexity 4 52 0 1 615 297 275 38 0 chr12 3945063 3945143 -117312387 - B1F SINE Alu -52 97 15 1 615 412 187 187 0 chr12 3945182 3945273 -117312257 - B1_Mus2 SINE Alu -23 124 17 1 615 315 93 0 0 chr12 3945349 3945392 -117312138 - MIRc SINE MIR -143 125 83 1 615 183 302 81 40 chr12 3945369 3945493 -117312037 + L2 LINE L2 2440 2568 -851 1 615 275 190 35 0 chr12 3945677 3945735 -117311795 + tRNA-Ala-GCA tRNA tRNA 2 61 -14 1 615 3475 40 0 0 chr12 3945735 3946131 -117311399 + MTA_Mm LTR MaLR 1 396 0 1 615 201 39 0 0 chr12 3946140 3946166 -117311364 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 615 288 0 0 0 chr12 3946628 3946660 -117310870 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 615 350 325 97 8 chr12 3946667 3946681 -117310849 - B4 SINE B4 -79 213 140 1 615 490 238 69 0 chr12 3946681 3946782 -117310748 - B1_Mur1 SINE Alu -39 110 3 1 615 201 213 0 0 chr12 3947811 3947858 -117309672 + CT-rich Low_complexity Low_complexity 2 48 0 1 615 263 398 51 8 chr12 3948069 3948305 -117309225 + MLT1F-int LTR MaLR 1052 1297 -192 1 615 248 244 178 0 chr12 3948434 3948524 -117309006 + MLT1G1 LTR MaLR 414 519 -60 1 615 384 22 0 0 chr12 3948533 3948578 -117308952 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 615 1043 119 69 0 chr12 3948631 3948790 -117308740 - B2_Mm2 SINE B2 -24 171 2 1 615 635 259 59 0 chr12 3949034 3949204 -117308326 - B3A SINE B2 -18 180 1 1 615 851 130 15 44 chr12 3949591 3949728 -117307802 + B1_Mur3 SINE Alu 2 134 -15 1 615 243 0 0 0 chr12 3949731 3949758 -117307772 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 615 497 236 36 9 chr12 3949850 3949961 -117307569 - PB1D10 SINE Alu 0 117 4 1 615 722 160 7 94 chr12 3950388 3950448 -117307082 - B1_Mus1 SINE Alu -21 127 69 1 615 1557 63 0 5 chr12 3950448 3950640 -117306890 - B2_Mm1a SINE B2 -1 192 2 1 615 722 160 7 94 chr12 3950640 3950717 -117306813 - B1_Mus1 SINE Alu -80 68 2 1 615 696 252 196 92 chr12 3950724 3951060 -117306470 + L1M5 LINE L1 2922 3292 -2854 1 615 308 259 111 22 chr12 3951089 3951192 -117306338 + ID4_ SINE ID 10 115 -37 1 615 415 227 65 7 chr12 3951196 3951351 -117306179 + L1M5 LINE L1 3348 3511 -2635 1 615 968 128 0 0 chr12 3951357 3951490 -117306040 + B1_Mur4 SINE Alu 5 137 -13 1 615 399 314 127 39 chr12 3951514 3951735 -117305795 + L1M5 LINE L1 3485 3725 -2421 1 615 3216 49 0 0 chr12 3951735 3952120 -117305410 + L1_Mus1 LINE L1 6183 6567 0 1 615 399 274 126 294 chr12 3952120 3952139 -117305391 + L1M5 LINE L1 3726 3736 -2410 1 615 1109 110 0 0 chr12 3952139 3952285 -117305245 + B1_Mus1 SINE Alu 2 147 -1 1 615 313 274 126 84 chr12 3952285 3952323 -117305207 + L1M5 LINE L1 3737 3778 -2368 1 615 1120 116 121 0 chr12 3952370 3952543 -117304987 + B2_Mm2 SINE B2 1 194 -1 1 615 1170 124 11 0 chr12 3952557 3952734 -117304796 + B2_Mm1t SINE B2 11 189 -4 1 615 711 232 17 27 chr12 3953009 3953205 -117304325 - B3 SINE B2 0 193 1 1 615 21 36 0 0 chr12 3956775 3956803 -117300727 + AT_rich Low_complexity Low_complexity 1 28 0 1 615 790 187 0 7 chr12 3956803 3956938 -117300592 - B1_Mus2 SINE Alu 0 147 14 1 615 387 0 0 0 chr12 3957153 3957196 -117300334 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 615 196 255 21 0 chr12 3957747 3957794 -117299736 + MIR3 SINE MIR 116 163 -45 1 615 468 0 0 0 chr12 3957903 3957955 -117299575 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 615 1640 27 5 0 chr12 3961152 3961339 -117296191 - B2_Mm1a SINE B2 -4 189 2 1 615 1006 42 0 0 chr12 3964948 3965068 -117292462 + B1_Mus1 SINE Alu 22 141 -7 1 615 252 0 0 0 chr12 3965068 3965096 -117292434 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 615 1054 108 0 0 chr12 3966726 3966874 -117290656 - URR1A DNA MER1_type 0 226 79 1 615 323 274 133 0 chr12 3967730 3967843 -117289687 + B1F2 SINE Alu 16 143 -6 1 615 532 273 74 34 chr12 3967847 3967995 -117289535 + RSINE1 SINE B4 4 157 -8 1 615 652 194 75 0 chr12 3968042 3968176 -117289354 - B1_Mur1 SINE Alu -5 144 1 1 615 674 157 0 18 chr12 3968207 3968317 -117289213 - B1_Mur1 SINE Alu -20 129 22 1 615 713 138 73 44 chr12 3969122 3969258 -117288272 - B1_Mur2 SINE Alu -9 140 1 1 615 1708 31 0 0 chr12 3972078 3972271 -117285259 + B2_Mm1t SINE B2 1 193 0 1 615 705 229 111 96 chr12 3972378 3972648 -117284882 - B4 SINE B4 -16 276 3 1 615 348 225 13 66 chr12 3972732 3972808 -117284722 - ID4 SINE ID 0 83 12 1 615 198 296 0 0 chr12 3972859 3972903 -117284627 - L3 LINE CR1 -3411 1078 1035 1 615 1259 199 0 10 chr12 3974375 3974583 -117282947 - B3 SINE B2 -10 206 1 1 615 434 228 48 19 chr12 3974847 3974950 -117282580 - PB1D10 SINE Alu -11 106 1 1 615 726 233 130 28 chr12 3974968 3975145 -117282385 - ID_B1 SINE B4 -28 196 2 1 615 190 220 67 17 chr12 3975924 3975984 -117281546 + L3 LINE CR1 716 778 -3711 1 615 758 97 128 8 chr12 3976173 3976298 -117281232 - B1_Mur3 SINE Alu 0 149 10 1 615 726 261 64 19 chr12 3977304 3977570 -117279960 + RLTR15 LTR ERVK 14 291 -68 1 615 351 213 53 0 chr12 3978825 3978900 -117278630 + ID4 SINE ID 1 79 -4 1 615 1008 162 12 133 chr12 3979009 3979265 -117278265 - URR1B DNA MER1_type 0 225 1 1 615 470 248 24 49 chr12 3979489 3979612 -117277918 + B1F1 SINE Alu 1 120 -29 1 615 219 355 50 50 chr12 3979996 3980076 -117277454 - MER91A DNA Tip100 -100 96 17 1 615 207 0 0 0 chr12 3980916 3980939 -117276591 + (T)n Simple_repeat Simple_repeat 1 23 0 1 615 531 0 0 0 chr12 3982978 3983037 -117274493 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 1 615 228 276 207 0 chr12 3984808 3984895 -117272635 - L2a LINE L2 -52 3374 3270 1 615 371 222 265 0 chr12 3985842 3985959 -117271571 - ID_B1 SINE B4 -1 223 76 1 615 804 212 152 0 chr12 3986164 3986348 -117271182 + ID_B1 SINE B4 5 216 -8 1 615 712 148 142 45 chr12 3986419 3986553 -117270977 + B1_Mus1 SINE Alu 1 147 -1 1 615 2138 271 86 54 chr12 3986731 3987374 -117270156 - Lx8 LINE L1 0 7473 6812 1 615 3161 65 2 25 chr12 3987374 3987782 -117269748 - MTB LTR MaLR -1 399 1 1 615 2138 271 86 54 chr12 3987782 3988003 -117269527 - Lx8 LINE L1 -662 6811 6582 1 615 230 274 87 17 chr12 3988034 3988149 -117269381 + MTEa LTR MaLR 257 379 0 1 615 439 186 274 0 chr12 3988559 3988661 -117268869 - B1F2 SINE Alu -6 143 14 1 615 221 265 0 0 chr12 3989222 3989271 -117268259 - B4 SINE B4 -218 74 26 1 615 288 0 0 0 chr12 3989282 3989314 -117268216 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 615 347 337 0 0 chr12 3989338 3989436 -117268094 - PB1D10 SINE Alu -16 101 4 1 615 492 331 28 0 chr12 3989476 3989621 -117267909 + MIR SINE MIR 32 180 -82 1 615 841 208 48 6 chr12 3989650 3989831 -117267699 - B3A SINE B2 -10 185 1 1 615 342 296 85 25 chr12 3990551 3990669 -117266861 - PB1 SINE Alu -2 125 1 1 615 568 279 35 14 chr12 3991429 3991571 -117265959 + RSINE1 SINE B4 1 145 -20 1 615 668 220 0 17 chr12 3992181 3992301 -117265229 - PB1D9 SINE Alu -1 119 2 1 615 329 268 106 99 chr12 3992314 3992458 -117265072 - B3A SINE B2 0 216 74 1 615 483 311 117 58 chr12 3992486 3992811 -117264719 - CYRA11_Mm Unknown Y-chromosome -102 515 172 1 615 1189 127 116 5 chr12 3992614 3992812 -117264718 + URR1A DNA MER1_type 7 226 0 1 615 400 273 176 21 chr12 3993547 3993702 -117263828 - B3 SINE B2 -6 210 49 1 615 1226 61 0 0 chr12 3993702 3993849 -117263681 + B1_Mus1 SINE Alu 2 148 0 1 615 1089 107 33 28 chr12 3993977 3994159 -117263371 + B2_Mm2 SINE B2 4 186 -9 1 615 878 44 9 0 chr12 3994773 3994887 -117262643 - B1_Mus2 SINE Alu 0 147 33 1 615 308 179 74 37 chr12 3994816 3994897 -117262633 - RLTR25B LTR ERVK -519 509 426 1 615 222 62 0 0 chr12 3995682 3995714 -117261816 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 1 615 975 75 36 29 chr12 3995714 3995851 -117261679 - B1_Mm SINE Alu -8 139 2 1 615 3338 41 13 0 chr12 3997108 3997499 -117260031 - MTA_Mm LTR MaLR 0 396 1 1 615 3971 113 127 22 chr12 3997499 3998215 -117259315 + MTA_Mm-int LTR MaLR 468 1258 0 1 615 3161 39 39 5 chr12 3998215 3998598 -117258932 + MTA_Mm LTR MaLR 1 396 0 1 615 589 264 96 5 chr12 3999003 3999201 -117258329 - ID_B1 SINE B4 -8 216 1 1 615 306 323 31 0 chr12 3999898 3999994 -117257536 + B4A SINE B4 152 250 -42 1 615 207 346 0 0 chr12 4000017 4000144 -117257386 + (TA)n Simple_repeat Simple_repeat 1 127 0 1 615 1536 53 16 0 chr12 4000207 4000395 -117257135 + B2_Mm2 SINE B2 1 191 -4 2 615 8718 32 0 2 chr12 4001324 4002586 -117254944 - L1Md_F2 LINE L1 0 6582 5351 3 615 12178 47 3 0 chr12 4002584 4004069 -117253461 + L1Md_F2 LINE L1 3864 5353 -530 3 615 1428 167 0 0 chr12 4004069 4004285 -117253245 - URR1A DNA MER1_type -7 219 4 4 615 259 383 56 5 chr12 4009266 4009463 -117248067 + MIR SINE MIR 39 245 -17 5 615 420 108 162 0 chr12 4009539 4009613 -117247917 - B3 SINE B2 0 216 131 6 615 597 256 12 181 chr12 4009692 4009940 -117247590 - ID_B1 SINE B4 -14 210 5 7 615 482 302 124 30 chr12 4010567 4010833 -117246697 + B4A SINE B4 2 292 0 8 615 822 134 14 40 chr12 4010949 4011097 -117246433 + B1_Mus1 SINE Alu 3 146 -2 9 615 1027 209 71 0 chr12 4011109 4011305 -117246225 - B3 SINE B2 -6 210 1 1 615 2573 118 76 8 chr12 4011327 4011721 -117245809 - MTC LTR MaLR 0 421 1 1 615 1168 75 7 0 chr12 4012205 4012351 -117245179 - B1_Mus2 SINE Alu 0 147 1 1 615 884 249 5 25 chr12 4012449 4012647 -117244883 - B3A SINE B2 -4 194 1 1 615 288 268 115 11 chr12 4012691 4012778 -117244752 - MIR SINE MIR -85 177 82 1 615 365 230 254 31 chr12 4012978 4013108 -117244422 + RSINE1 SINE B4 4 162 -3 1 615 719 107 122 8 chr12 4013146 4013269 -117244261 + B1_Mus2 SINE Alu 1 137 -10 1 615 4821 70 3 9 chr12 4013391 4014059 -117243471 - L1_Mus3 LINE L1 0 6638 6008 1 615 24 53 0 0 chr12 4014074 4014112 -117243418 + AT_rich Low_complexity Low_complexity 1 38 0 1 615 349 250 130 24 chr12 4014716 4014839 -117242691 + B1_Mur2 SINE Alu 1 136 -13 1 615 832 242 72 0 chr12 4014918 4015083 -117242447 + B3 SINE B2 3 181 -35 2 615 309 51 0 0 chr12 4015083 4015122 -117242408 + (CATA)n Simple_repeat Simple_repeat 4 42 0 2 615 832 242 72 0 chr12 4015122 4015150 -117242380 + B3 SINE B2 182 209 -7 2 615 608 176 107 16 chr12 4015166 4015287 -117242243 + B1_Mur1 SINE Alu 18 149 0 2 615 605 242 22 43 chr12 4016185 4016323 -117241207 - RSINE1 SINE B4 -28 137 3 2 615 1110 297 47 61 chr12 4016687 4017042 -117240488 + Tigger7 DNA MER2_type 1 349 -201 2 615 394 111 27 14 chr12 4017042 4017115 -117240415 - RMER19B LTR ERVK 0 902 829 2 615 358 260 6 144 chr12 4017116 4017296 -117240234 + MER44B DNA MER2_type 358 512 -38 2 615 376 224 28 101 chr12 4017304 4017374 -117240156 - MTEb LTR MaLR -1 378 315 2 615 189 0 0 0 chr12 4017374 4017395 -117240135 + (ATTTG)n Simple_repeat Simple_repeat 3 23 0 2 615 376 314 30 99 chr12 4017395 4017547 -117239983 - MTEb LTR MaLR -65 314 166 2 615 821 163 6 0 chr12 4017547 4017725 -117239805 + GA-rich Low_complexity Low_complexity 1 179 0 2 615 231 114 0 0 chr12 4017730 4017765 -117239765 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 615 539 190 18 31 chr12 4018228 4018356 -117239174 + PB1D7 SINE Alu 11 133 -16 3 615 591 40 0 0 chr12 4019113 4019187 -117238343 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 3 615 484 209 12 0 chr12 4019495 4019581 -117237949 + B1_Mur1 SINE Alu 42 128 -21 3 615 809 228 40 20 chr12 4019633 4019834 -117237696 + B3 SINE B2 1 205 -11 3 615 402 21 0 0 chr12 4020162 4020209 -117237321 + (GAA)n Simple_repeat Simple_repeat 2 48 0 3 615 279 0 0 0 chr12 4020209 4020240 -117237290 + (CAA)n Simple_repeat Simple_repeat 1 31 0 3 615 708 52 0 0 chr12 4020327 4020424 -117237106 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 615 1445 84 5 0 chr12 4021002 4021193 -117236337 - B2_Mm1t SINE B2 0 193 2 3 615 892 143 20 0 chr12 4021197 4021344 -117236186 - B1_Mur4 SINE Alu 0 150 1 3 615 640 212 28 101 chr12 4021371 4021549 -117235981 - B3A SINE B2 -7 191 27 3 615 1361 75 32 5 chr12 4021552 4021741 -117235789 - B2_Mm2 SINE B2 0 195 2 4 615 594 0 0 0 chr12 4022513 4022579 -117234951 + (TTTTC)n Simple_repeat Simple_repeat 4 69 0 4 615 593 36 0 78 chr12 4022593 4022683 -117234847 - B1_Mus2 SINE Alu -64 83 1 4 615 665 309 89 42 chr12 4022786 4023144 -117234386 + LTR90A LTR LTR 1 375 -601 4 615 399 89 0 0 chr12 4023376 4023432 -117234098 + (T)n Simple_repeat Simple_repeat 1 56 0 4 615 1135 36 7 0 chr12 4023432 4023572 -117233958 - B1_Mus2 SINE Alu 0 147 7 4 615 501 174 25 99 chr12 4023466 4023587 -117233943 - MT2B LTR ERVL -337 264 153 4 615 391 302 83 35 chr12 4023835 4024066 -117233464 - MIRb SINE MIR -10 258 15 4 615 594 75 0 0 chr12 4025178 4025258 -117232272 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 615 203 200 22 0 chr12 4025258 4025303 -117232227 + CT-rich Low_complexity Low_complexity 1 46 0 4 615 290 355 114 9 chr12 4025303 4025530 -117232000 - Helitron3Na_Mam RC Helitron -57 429 179 5 615 270 0 0 0 chr12 4025836 4025866 -117231664 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 615 894 214 21 32 chr12 4026016 4026204 -117231326 + B3 SINE B2 1 186 -30 5 615 248 319 62 0 chr12 4026223 4026367 -117231163 - L1MB3 LINE L1 -17 6166 6014 5 615 298 315 161 11 chr12 4026375 4026561 -117230969 - B4A SINE B4 -46 246 33 5 615 319 209 226 48 chr12 4026561 4026707 -117230823 - L1MB3 LINE L1 -196 5987 5816 5 615 210 139 0 27 chr12 4026717 4026754 -117230776 - ID4_ SINE ID 0 83 48 5 615 442 147 27 0 chr12 4026725 4026800 -117230730 - B3 SINE B2 -139 77 1 5 615 346 244 0 79 chr12 4026824 4026913 -117230617 - ID4_ SINE ID 0 83 2 5 615 243 300 87 132 chr12 4027203 4027422 -117230108 - MT2B2 LTR ERVL -191 393 185 5 615 460 279 130 24 chr12 4027295 4027497 -117230033 - B4 SINE B4 -49 243 1 5 615 661 148 19 0 chr12 4027521 4027629 -117229901 - B1_Mus1 SINE Alu -34 114 5 6 615 223 311 0 16 chr12 4027714 4027776 -117229754 - ID4_ SINE ID 0 83 23 6 615 304 347 60 30 chr12 4027784 4027983 -117229547 - L1M4 LINE L1 -804 5342 5138 6 615 273 29 0 0 chr12 4028044 4028078 -117229452 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 615 224 234 30 45 chr12 4028086 4028153 -117229377 + MIRc SINE MIR 68 133 -135 6 615 418 263 76 14 chr12 4028496 4028626 -117228904 - MIR3 SINE MIR -12 196 65 6 615 681 148 383 0 chr12 4029567 4029716 -117227814 + B3 SINE B2 1 206 -10 6 615 392 235 69 0 chr12 4030059 4030161 -117227369 + PB1D10 SINE Alu 2 110 -7 6 615 626 211 77 11 chr12 4030458 4030599 -117226931 - ID_B1 SINE B4 -54 238 92 6 615 200 143 24 0 chr12 4030666 4030708 -117226822 + (CCTG)n Simple_repeat Simple_repeat 4 46 0 6 615 348 369 55 16 chr12 4031020 4031202 -117226328 + MIR SINE MIR 13 201 -61 7 615 631 254 0 8 chr12 4031351 4031482 -117226048 - RSINE1 SINE B4 -33 132 3 7 615 1502 64 16 0 chr12 4031678 4031865 -117225665 + B2_Mm2 SINE B2 1 190 -5 7 615 866 224 50 55 chr12 4031865 4031957 -117225573 - B3A SINE B2 0 198 107 7 615 1029 148 141 15 chr12 4031957 4032156 -117225374 - URR1A DNA MER1_type 0 226 3 7 615 866 224 50 55 chr12 4032156 4032262 -117225268 - B3A SINE B2 -92 106 1 7 615 372 186 121 90 chr12 4032267 4032433 -117225097 + L1MA6 LINE L1 6115 6285 -15 7 615 223 263 17 17 chr12 4033041 4033099 -117224431 - L4 LINE RTE -1916 113 56 7 615 29 0 0 0 chr12 4033180 4033209 -117224321 + AT_rich Low_complexity Low_complexity 1 29 0 7 615 252 331 45 51 chr12 4033236 4033392 -117224138 + ID_B1 SINE B4 1 155 -69 7 615 268 213 26 13 chr12 4033459 4033535 -117223995 + RSINE1 SINE B4 88 164 -1 7 615 865 133 44 0 chr12 4033951 4034086 -117223444 - B1_Mus2 SINE Alu 0 147 7 8 615 288 0 0 0 chr12 4034522 4034554 -117222976 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 615 241 181 45 57 chr12 4034558 4034646 -117222884 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 8 615 567 0 0 0 chr12 4035056 4035119 -117222411 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 8 615 1230 72 0 29 chr12 4035119 4035285 -117222245 - B2_Mm2 SINE B2 -31 164 2 8 615 743 188 43 0 chr12 4035437 4035575 -117221955 + B1_Mus1 SINE Alu 4 147 -1 8 615 329 248 25 107 chr12 4035700 4035822 -117221708 + PB1D10 SINE Alu 6 117 0 8 615 241 270 88 80 chr12 4036022 4036177 -117221353 - MIR SINE MIR -80 188 22 8 615 278 266 0 0 chr12 4036669 4036733 -117220797 - B1F1 SINE Alu -13 136 73 8 615 180 0 0 0 chr12 4036820 4036840 -117220690 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 8 615 21 0 0 0 chr12 4038851 4038872 -117218658 + GC_rich Low_complexity Low_complexity 1 21 0 9 615 558 0 0 0 chr12 4039186 4039248 -117218282 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 615 243 0 0 0 chr12 4039681 4039708 -117217822 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 615 396 215 64 27 chr12 4039991 4040101 -117217429 - MTD LTR MaLR -2 417 304 9 615 1051 204 149 56 chr12 4040120 4040288 -117217242 + ORR1D1 LTR MaLR 1 165 -209 9 615 540 45 0 0 chr12 4040288 4040355 -117217175 + (TC)n Simple_repeat Simple_repeat 1 67 0 9 615 1051 204 149 56 chr12 4040355 4040393 -117217137 + ORR1D1 LTR MaLR 166 228 -146 9 615 207 0 0 0 chr12 4040393 4040416 -117217114 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 9 615 1051 204 149 56 chr12 4040416 4040550 -117216980 + ORR1D1 LTR MaLR 229 374 0 9 615 461 269 212 17 chr12 4040600 4040831 -117216699 + RMER15 LTR ERVL 300 575 0 9 615 655 287 62 5 chr12 4041106 4041316 -117216214 + Tigger5 DNA MER2_type 28 249 -2157 9 615 258 194 0 0 chr12 4041377 4041444 -117216086 + (TATG)n Simple_repeat Simple_repeat 1 67 0 9 615 643 285 77 18 chr12 4041445 4041717 -117215813 - B4A SINE B4 -1 291 4 1 615 1489 54 11 0 chr12 4042940 4043125 -117214405 + B2_Mm1t SINE B2 1 187 -6 1 615 189 121 0 0 chr12 4043219 4043252 -117214278 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 615 425 167 170 67 chr12 4043256 4043391 -117214139 - B1_Mur3 SINE Alu 0 149 1 1 615 648 184 0 9 chr12 4044215 4044325 -117213205 + B3 SINE B2 5 113 -103 1 615 370 274 104 36 chr12 4044336 4044388 -117213142 + RLTR15 LTR ERVK 3 56 -303 1 615 2389 85 12 3 chr12 4044388 4044707 -117212823 + ORR1A3 LTR MaLR 1 322 -4 1 615 370 274 104 36 chr12 4044707 4044751 -117212779 + RLTR15 LTR ERVK 57 100 -259 1 615 522 31 0 0 chr12 4044751 4044815 -117212715 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 615 370 274 104 36 chr12 4044815 4044910 -117212620 + RLTR15 LTR ERVK 101 207 -152 1 615 210 158 0 0 chr12 4044959 4044997 -117212533 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 1 615 586 211 28 0 chr12 4045047 4045156 -117212374 + B3 SINE B2 104 215 -1 1 615 452 211 25 256 chr12 4045520 4045641 -117211889 + MTD LTR MaLR 13 129 -290 1 615 789 229 107 15 chr12 4045645 4045849 -117211681 + ID_B1 SINE B4 38 245 -47 1 615 381 22 0 0 chr12 4046286 4046332 -117211198 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 615 528 198 0 0 chr12 4046341 4046427 -117211103 + PB1D10 SINE Alu 13 98 -19 1 615 321 236 11 43 chr12 4046365 4046428 -117211102 + MT2B2 LTR ERVL 194 255 -329 1 615 234 0 0 0 chr12 4046428 4046454 -117211076 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 615 1197 58 0 0 chr12 4046454 4046607 -117210923 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 615 321 236 11 43 chr12 4046607 4046635 -117210895 + MT2B2 LTR ERVL 256 281 -303 1 615 3179 41 18 5 chr12 4046703 4047094 -117210436 + MTB LTR MaLR 1 396 -4 1 615 422 298 81 94 chr12 4047597 4047905 -117209625 + ORR1E LTR MaLR 1 304 -55 1 615 183 233 67 0 chr12 4048111 4048171 -117209359 + MER5A DNA MER1_type 37 100 -89 1 615 2230 139 14 82 chr12 4048770 4049186 -117208344 + ORR1B1 LTR MaLR 1 388 -6 1 615 2193 256 24 12 chr12 4049365 4049871 -117207659 - Lx8 LINE L1 -413 7060 6549 1 615 184 262 0 15 chr12 4049892 4049934 -117207596 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 615 1537 223 30 56 chr12 4049934 4050362 -117207168 + MTD LTR MaLR 3 419 0 1 615 184 262 0 15 chr12 4050362 4050389 -117207141 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 615 243 0 0 0 chr12 4050389 4050416 -117207114 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 615 184 262 0 15 chr12 4050416 4050439 -117207091 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 615 1642 162 32 116 chr12 4050439 4050844 -117206686 + ORR1D1 LTR MaLR 1 371 -3 1 615 184 262 0 15 chr12 4050844 4050881 -117206649 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 615 705 199 7 52 chr12 4051377 4051531 -117205999 - B1_Mus2 SINE Alu 0 147 1 1 615 333 296 0 0 chr12 4051572 4051653 -117205877 + ID4_ SINE ID 1 81 -2 1 615 467 237 21 78 chr12 4051677 4051819 -117205711 + B1F SINE Alu 5 138 -11 1 615 770 145 7 0 chr12 4051821 4051973 -117205557 + GA-rich Low_complexity Low_complexity 2 154 0 1 615 315 0 0 0 chr12 4052318 4052353 -117205177 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 615 366 23 0 0 chr12 4052356 4052399 -117205131 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 615 517 272 23 31 chr12 4052556 4052685 -117204845 + RSINE1 SINE B4 2 129 -36 1 615 924 130 77 7 chr12 4052701 4052856 -117204674 - ORR1A3 LTR MaLR -160 166 1 1 615 322 243 14 0 chr12 4052879 4052949 -117204581 + ID4_ SINE ID 4 74 -9 1 615 304 328 60 75 chr12 4053131 4053332 -117204198 + HAL1 LINE L1 141 338 -2169 1 615 730 161 73 0 chr12 4053377 4053514 -117204016 - B1_Mur1 SINE Alu 0 149 3 1 615 702 197 83 0 chr12 4053919 4054051 -117203479 - B1_Mur4 SINE Alu -7 143 1 1 615 23 0 0 0 chr12 4054466 4054489 -117203041 + AT_rich Low_complexity Low_complexity 1 23 0 1 615 376 256 49 153 chr12 4054498 4054701 -117202829 + B4 SINE B4 42 223 -69 1 615 749 188 21 48 chr12 4054558 4054703 -117202827 + B1_Mus1 SINE Alu 8 148 0 1 615 280 191 14 113 chr12 4054720 4054775 -117202755 + PB1D7 SINE Alu 56 107 -13 1 615 261 0 0 0 chr12 4054775 4054804 -117202726 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 615 280 191 14 113 chr12 4054804 4054819 -117202711 + PB1D7 SINE Alu 108 119 -1 1 615 306 98 0 0 chr12 4055220 4055271 -117202259 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 615 1067 110 0 0 chr12 4056071 4056217 -117201313 + B1_Mus1 SINE Alu 3 148 0 1 615 329 302 64 64 chr12 4056224 4056397 -117201133 + L1M5 LINE L1 5656 5828 -296 1 615 1288 14 7 0 chr12 4056400 4056546 -117200984 + B1_Mm SINE Alu 1 147 0 1 615 180 111 0 0 chr12 4057098 4057125 -117200405 + (GGA)n Simple_repeat Simple_repeat 2 28 0 1 615 867 250 38 5 chr12 4057410 4057619 -117199911 - B3 SINE B2 0 216 1 1 615 273 277 46 0 chr12 4057752 4057817 -117199713 + ID4_ SINE ID 14 81 -2 1 615 364 210 11 69 chr12 4057986 4058175 -117199355 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 615 210 78 18 89 chr12 4058194 4058250 -117199280 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 615 915 119 138 42 chr12 4058875 4059042 -117198488 + B2_Mm2 SINE B2 2 184 -11 1 615 2655 153 97 12 chr12 4059050 4059554 -117197976 + RMER1B Other Other 520 1066 0 1 615 598 281 66 62 chr12 4059627 4059961 -117197569 + BGLII_B LTR ERVK 2 269 -308 1 615 1223 245 96 42 chr12 4060111 4060156 -117197374 + MTEa LTR MaLR 2 49 -330 1 615 502 246 144 12 chr12 4060156 4060329 -117197201 + B3A SINE B2 3 198 0 1 615 1223 245 96 42 chr12 4060329 4060637 -117196893 + MTEa LTR MaLR 50 374 -5 1 615 602 320 111 29 chr12 4060717 4061032 -117196498 + MLT1A0 LTR MaLR 17 357 -8 1 615 758 111 9 0 chr12 4061227 4061335 -117196195 + B1_Mur4 SINE Alu 5 113 -37 1 615 313 211 0 0 chr12 4061389 4061446 -117196084 - B4 SINE B4 -234 58 2 1 615 909 170 0 0 chr12 4061601 4061742 -117195788 - B1_Mur3 SINE Alu -6 143 3 1 615 929 233 6 0 chr12 4061763 4061935 -117195595 + B3 SINE B2 39 211 -5 1 615 271 243 28 28 chr12 4061941 4062013 -117195517 + B4A SINE B4 215 286 -6 1 615 204 276 17 0 chr12 4062041 4062099 -117195431 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 615 699 99 0 0 chr12 4062284 4062385 -117195145 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 1 615 1199 54 0 13 chr12 4062385 4062524 -117195006 - B1_Mus2 SINE Alu -8 139 1 1 615 310 365 171 4 chr12 4062534 4062779 -117194751 - L1MC4 LINE L1 -450 7592 7307 1 616 22 80 0 0 chr12 4063497 4063547 -117193983 + AT_rich Low_complexity Low_complexity 1 50 0 1 616 405 0 0 0 chr12 4063559 4063604 -117193926 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 616 3811 58 19 0 chr12 4063604 4064067 -117193463 + MT2C_Mm LTR ERVL 4 475 0 1 616 608 120 0 10 chr12 4064072 4064173 -117193357 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 616 541 296 75 34 chr12 4064188 4064335 -117193195 + RSINE1 SINE B4 7 159 -6 1 616 414 39 0 0 chr12 4064342 4064394 -117193136 + (CATA)n Simple_repeat Simple_repeat 4 55 0 1 616 329 322 21 41 chr12 4064405 4064526 -117193004 - PB1D7 SINE Alu 0 120 1 1 616 366 281 14 92 chr12 4064835 4064976 -117192554 + B1_Mus1 SINE Alu 5 134 -14 1 616 215 208 0 0 chr12 4065668 4065716 -117191814 + (CCA)n Simple_repeat Simple_repeat 3 50 0 1 616 825 174 0 27 chr12 4065745 4065893 -117191637 + B1_Mur3 SINE Alu 5 148 -1 1 616 185 0 40 0 chr12 4065910 4065935 -117191595 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 616 488 279 176 0 chr12 4066011 4066176 -117191354 - ID_B1 SINE B4 -29 195 2 1 616 180 0 0 0 chr12 4066675 4066695 -117190835 + (CAG)n Simple_repeat Simple_repeat 1 20 0 1 616 204 295 12 49 chr12 4066950 4067032 -117190498 + GA-rich Low_complexity Low_complexity 4 82 0 1 616 255 231 0 0 chr12 4067469 4067521 -117190009 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 1 616 551 211 6 17 chr12 4067524 4067698 -117189832 + (TA)n Simple_repeat Simple_repeat 2 173 0 1 616 324 0 0 0 chr12 4067742 4067778 -117189752 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 616 787 169 78 0 chr12 4067779 4067921 -117189609 + ORR1D2 LTR MaLR 216 368 -2 1 616 1215 35 7 0 chr12 4068269 4068413 -117189117 + B1_Mus2 SINE Alu 1 145 -2 1 616 468 255 30 30 chr12 4068423 4068589 -117188941 + L1MB5 LINE L1 5860 6025 -149 1 616 302 329 31 69 chr12 4068735 4068895 -117188635 - RMER4B LTR ERVK -422 163 10 1 616 456 262 35 7 chr12 4068978 4069120 -117188410 + L1MB7 LINE L1 6018 6163 -21 1 616 327 287 128 0 chr12 4069137 4069231 -117188299 - MER58A DNA MER1_type -111 113 8 1 616 1292 68 74 0 chr12 4069654 4069830 -117187700 + B2_Mm2 SINE B2 1 189 -6 1 616 309 198 122 12 chr12 4070073 4070155 -117187375 - B4A SINE B4 -200 92 2 1 616 252 149 0 0 chr12 4070889 4070936 -117186594 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 616 327 256 58 94 chr12 4070945 4071083 -117186447 - L1M LINE L1 -2648 5394 5262 1 616 947 161 211 21 chr12 4071504 4071694 -117185836 - URR1A DNA MER1_type 0 226 1 1 616 218 309 61 10 chr12 4072186 4072284 -117185246 - L3 LINE CR1 -3389 1100 998 1 616 188 61 61 0 chr12 4072306 4072339 -117185191 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 616 727 91 0 0 chr12 4072360 4072459 -117185071 + B1_Mur4 SINE Alu 20 118 -32 1 616 270 0 0 0 chr12 4072466 4072496 -117185034 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 616 469 226 147 9 chr12 4072552 4072668 -117184862 - B1F SINE Alu -1 148 17 2 616 597 171 79 31 chr12 4072567 4072694 -117184836 - ID_B1 SINE B4 -28 196 64 2 616 371 247 35 58 chr12 4072721 4072807 -117184723 - B1F1 SINE Alu -56 93 10 2 616 492 240 0 0 chr12 4073395 4073491 -117184039 + PB1D10 SINE Alu 1 96 -21 2 616 276 345 63 95 chr12 4074089 4074342 -117183188 - L2b LINE L2 -8 3367 3123 2 616 316 240 13 26 chr12 4074552 4074629 -117182901 + MADE2 DNA Mariner 2 77 -3 2 616 273 325 149 0 chr12 4075140 4075254 -117182276 - Tigger15a DNA TcMar -500 215 85 2 616 256 274 14 14 chr12 4075783 4075798 -117181732 + B4A SINE B4 73 87 -205 2 616 357 318 53 26 chr12 4075798 4075911 -117181619 + PB1D10 SINE Alu 2 117 0 2 616 500 229 30 138 chr12 4076174 4076324 -117181206 + B1F SINE Alu 1 137 -12 2 616 270 0 0 0 chr12 4076324 4076354 -117181176 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 616 500 229 30 138 chr12 4076354 4076370 -117181160 + B1F SINE Alu 138 149 0 2 616 794 311 51 29 chr12 4076607 4076671 -117180859 + B4A SINE B4 10 70 -222 2 616 599 207 140 60 chr12 4076671 4076871 -117180659 - B3 SINE B2 0 216 1 2 616 794 311 51 29 chr12 4076871 4077081 -117180449 + B4A SINE B4 71 290 -2 2 616 232 175 75 0 chr12 4077224 4077304 -117180226 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 616 653 271 28 11 chr12 4077675 4077854 -117179676 + B3A SINE B2 1 182 -16 2 616 23 0 0 0 chr12 4077859 4077882 -117179648 + AT_rich Low_complexity Low_complexity 1 23 0 2 616 291 211 164 5 chr12 4078023 4078117 -117179413 - B4A SINE B4 -4 288 184 2 616 685 319 106 27 chr12 4078257 4078550 -117178980 - MLT1G1 LTR MaLR -174 405 90 2 616 237 342 0 0 chr12 4078576 4078649 -117178881 + L1M3 LINE L1 5853 5925 -243 2 616 247 276 221 30 chr12 4078652 4078783 -117178747 - MLT1E3 LTR MaLR -462 162 7 2 616 551 180 70 0 chr12 4079161 4079261 -117178269 - B3 SINE B2 -109 107 1 2 616 289 316 115 45 chr12 4079262 4079574 -117177956 + L1MC4 LINE L1 6234 6567 -1315 2 616 360 0 0 0 chr12 4079607 4079647 -117177883 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 616 235 208 62 0 chr12 4079903 4079951 -117177579 + B4 SINE B4 183 233 -59 2 616 309 287 87 19 chr12 4079957 4080060 -117177470 + L1MC4 LINE L1 7817 7926 -116 2 616 393 22 0 0 chr12 4080205 4080251 -117177279 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 616 471 18 0 0 chr12 4080251 4080306 -117177224 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 616 1140 128 0 171 chr12 4080577 4080869 -117176661 + RMER10B LTR ERVL 157 398 0 2 616 252 0 0 0 chr12 4081435 4081463 -117176067 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 616 475 223 86 80 chr12 4081595 4081746 -117175784 + MER2 DNA MER2_type 32 183 -162 2 616 1143 149 108 10 chr12 4081812 4082016 -117175514 + MTC LTR MaLR 190 413 -8 2 616 607 184 21 15 chr12 4082108 4082231 -117175299 - PB1D9 SINE Alu -17 132 3 2 616 295 233 95 53 chr12 4082158 4082253 -117175277 - B4 SINE B4 -127 165 67 2 616 332 323 60 8 chr12 4083936 4084070 -117173460 + B4 SINE B4 111 251 -41 2 616 303 28 0 0 chr12 4084070 4084106 -117173424 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 616 580 239 73 118 chr12 4084204 4084408 -117173122 + B3A SINE B2 2 196 -2 2 616 956 251 70 58 chr12 4084415 4084757 -117172773 - L1MB8 LINE L1 -5 6173 5828 2 616 1041 109 0 75 chr12 4084786 4084877 -117172653 - B1_Mus1 SINE Alu 0 148 68 2 616 1567 53 5 0 chr12 4084877 4085067 -117172463 + B2_Mm1a SINE B2 1 191 -2 2 616 1041 109 0 75 chr12 4085067 4085134 -117172396 - B1_Mus1 SINE Alu -81 67 2 2 616 529 154 169 1 chr12 4085550 4085669 -117171861 + B1_Mur1 SINE Alu 2 148 -1 2 616 232 157 0 38 chr12 4085732 4085785 -117171745 - ID_B1 SINE B4 0 224 174 2 616 2523 247 296 14 chr12 4086663 4087307 -117170223 - Lx8 LINE L1 -2 7471 6621 2 616 2272 117 67 16 chr12 4087307 4087681 -117169849 - ORR1B1 LTR MaLR -1 393 1 2 616 2523 246 148 13 chr12 4087681 4087890 -117169640 - Lx8 LINE L1 -853 6620 6408 2 616 636 148 50 43 chr12 4089255 4089396 -117168134 + B1_Mur4 SINE Alu 1 142 -8 2 616 309 51 0 0 chr12 4089397 4089436 -117168094 + (CAGAA)n Simple_repeat Simple_repeat 5 43 0 2 616 243 88 0 0 chr12 4089463 4089497 -117168033 + (CAGAA)n Simple_repeat Simple_repeat 5 38 0 2 616 264 59 0 0 chr12 4089524 4089558 -117167972 + (CAGAA)n Simple_repeat Simple_repeat 5 38 0 2 616 258 183 0 0 chr12 4089580 4089651 -117167879 + A-rich Low_complexity Low_complexity 1 71 0 2 616 215 225 105 63 chr12 4089675 4089770 -117167760 - PB1 SINE Alu -11 116 7 2 616 411 256 15 58 chr12 4089998 4090135 -117167395 - RSINE1 SINE B4 -3 162 32 2 616 2044 229 27 39 chr12 4090161 4090644 -117166886 - RLTR18B LTR ERVK -4 508 32 2 616 304 226 12 12 chr12 4090670 4090755 -117166775 - L1MDa LINE L1 -5219 1414 1330 2 616 503 287 146 11 chr12 4090826 4091094 -117166436 - L1MDa LINE L1 -6304 329 26 2 616 197 253 196 21 chr12 4091741 4091838 -117165692 - L3 LINE CR1 -498 3991 3878 2 616 338 374 23 15 chr12 4092364 4092497 -117165033 - MIR3 SINE MIR -34 174 41 2 616 740 0 0 39 chr12 4092521 4092625 -117164905 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 616 315 0 0 0 chr12 4092625 4092659 -117164871 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 616 558 234 44 0 chr12 4092877 4093014 -117164516 + ID_B1 SINE B4 82 224 0 2 616 408 180 204 18 chr12 4093216 4093329 -117164201 + B3 SINE B2 1 134 -82 2 616 180 0 0 0 chr12 4093348 4093368 -117164162 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 616 681 222 8 8 chr12 4093420 4093547 -117163983 + B1_Mur2 SINE Alu 9 135 -14 2 616 207 0 0 0 chr12 4093562 4093585 -117163945 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 616 609 272 93 0 chr12 4093861 4094023 -117163507 - B3 SINE B2 -38 178 2 2 616 891 254 117 0 chr12 4094041 4094289 -117163241 + B4A SINE B4 2 278 -14 2 616 612 101 0 0 chr12 4094353 4094442 -117163088 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 2 616 201 74 0 0 chr12 4094442 4094469 -117163061 + (CAGA)n Simple_repeat Simple_repeat 1 27 0 2 616 1926 164 40 53 chr12 4094599 4094978 -117162552 - ORR1C1 LTR MaLR 0 378 5 2 616 434 258 75 0 chr12 4095170 4095290 -117162240 - B1F SINE Alu -20 129 1 2 616 274 277 164 43 chr12 4095569 4095760 -117161770 - MIRb SINE MIR -38 230 6 2 616 348 250 97 0 chr12 4096435 4096559 -117160971 + B1F2 SINE Alu 1 136 -13 2 616 803 113 25 101 chr12 4096632 4096790 -117160740 + B1_Mus1 SINE Alu 1 146 -2 2 616 752 243 142 43 chr12 4097510 4097764 -117159766 - MTE2b LTR MaLR -2 377 99 2 616 796 217 7 0 chr12 4097900 4098043 -117159487 - B1_Mur2 SINE Alu -5 144 1 2 616 208 328 0 0 chr12 4098053 4098114 -117159416 + MER5A DNA MER1_type 128 188 -1 2 616 436 265 76 67 chr12 4098398 4098608 -117158922 - B4A SINE B4 0 292 81 2 616 2412 117 81 21 chr12 4098719 4099103 -117158427 - MTB_Mm LTR MaLR 0 407 1 2 616 664 266 75 11 chr12 4099743 4099929 -117157601 - B3 SINE B2 -11 205 8 2 616 769 212 184 20 chr12 4100030 4100275 -117157255 - B4 SINE B4 -6 286 2 2 616 1435 65 0 31 chr12 4100295 4100486 -117157044 - B2_Mm1a SINE B2 -7 186 2 2 616 1044 189 35 0 chr12 4100500 4100701 -117156829 - B3 SINE B2 -4 212 5 2 616 330 324 89 42 chr12 4100791 4100981 -117156549 - L1MEf LINE L1 -5447 753 555 2 616 549 308 4 92 chr12 4101550 4101671 -117155859 + ID_B1 SINE B4 27 138 -154 2 616 1601 57 0 0 chr12 4101671 4101863 -117155667 + B2_Mm1a SINE B2 1 192 -1 2 616 549 279 0 78 chr12 4101863 4101962 -117155568 + ID_B1 SINE B4 132 223 -1 2 616 310 228 75 21 chr12 4101980 4102074 -117155456 + L1MC LINE L1 5703 5801 -2081 2 616 252 234 78 0 chr12 4102116 4102180 -117155350 - tRNA-Ala-GCY_ tRNA tRNA -4 71 3 2 616 1245 41 0 0 chr12 4102236 4102383 -117155147 + B1_Mus1 SINE Alu 1 147 -1 2 616 201 74 0 0 chr12 4102385 4102412 -117155118 + (A)n Simple_repeat Simple_repeat 1 27 0 2 616 462 255 9 9 chr12 4102412 4102519 -117155011 - ID_B1 SINE B4 -34 190 84 2 616 30 0 0 0 chr12 4102770 4102800 -117154730 + AT_rich Low_complexity Low_complexity 1 30 0 2 616 439 116 14 0 chr12 4102839 4102908 -117154622 + BC1_Mm scRNA scRNA 1 70 -82 2 616 220 344 61 8 chr12 4102908 4102970 -117154560 + B4A SINE B4 2 139 -153 2 616 319 287 102 0 chr12 4103736 4103844 -117153686 + PB1D7 SINE Alu 1 119 -1 2 616 229 279 124 34 chr12 4103853 4103942 -117153588 + BC1_Mm scRNA scRNA 2 98 -54 2 616 474 164 22 20 chr12 4104054 4104171 -117153359 - B1_Mur1 SINE Alu -6 144 33 2 616 219 36 0 0 chr12 4104866 4104894 -117152636 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2 616 1182 81 0 0 chr12 4104897 4105045 -117152485 - B1_Mus1 SINE Alu 0 148 1 2 616 954 226 116 13 chr12 4105454 4105678 -117151852 + B4A SINE B4 1 247 -45 2 616 558 0 0 0 chr12 4105720 4105782 -117151748 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 616 228 214 52 91 chr12 4107395 4107472 -117150058 + PB1D10 SINE Alu 41 114 -3 2 616 180 0 0 0 chr12 4108881 4108901 -117148629 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2 616 380 228 25 0 chr12 4110730 4110809 -117146721 + PB1D10 SINE Alu 30 110 -7 2 616 341 254 151 32 chr12 4112324 4112450 -117145080 + B1F2 SINE Alu 3 143 -6 2 616 29 28 0 0 chr12 4113335 4113371 -117144159 + AT_rich Low_complexity Low_complexity 1 36 0 2 616 194 0 39 0 chr12 4113803 4113829 -117143701 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 616 485 271 65 36 chr12 4113916 4114054 -117143476 + ID_B1 SINE B4 82 223 -1 3 616 28 0 0 0 chr12 4114056 4114084 -117143446 + AT_rich Low_complexity Low_complexity 1 28 0 3 616 252 0 0 0 chr12 4114211 4114239 -117143291 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 616 1050 64 50 0 chr12 4114252 4114392 -117143138 + B1_Mus2 SINE Alu 1 147 0 3 616 296 318 9 9 chr12 4114733 4114844 -117142686 + PB1D10 SINE Alu 2 112 -5 3 616 770 183 0 15 chr12 4114848 4114981 -117142549 + B1_Mur4 SINE Alu 13 143 -7 3 616 23 68 0 0 chr12 4114983 4115027 -117142503 + AT_rich Low_complexity Low_complexity 1 44 0 3 616 494 241 9 36 chr12 4115213 4115325 -117142205 + URR1A DNA MER1_type 1 109 -117 3 616 1550 57 0 10 chr12 4115394 4115590 -117141940 - B2_Mm2 SINE B2 -1 194 1 3 616 244 163 58 58 chr12 4115880 4115932 -117141598 - B1_Mm SINE Alu -53 94 43 3 616 319 354 81 40 chr12 4116477 4116798 -117140732 + MLT1L LTR MaLR 118 451 -159 3 616 22 0 0 0 chr12 4116803 4116825 -117140705 + AT_rich Low_complexity Low_complexity 1 22 0 3 616 589 208 11 144 chr12 4116855 4117035 -117140495 - RSINE1 SINE B4 0 165 10 3 616 342 0 0 0 chr12 4117120 4117158 -117140372 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 616 189 0 0 0 chr12 4117317 4117338 -117140192 + (GGGA)n Simple_repeat Simple_repeat 2 22 0 3 616 356 111 0 14 chr12 4117994 4118067 -117139463 + (TCTCTG)n Simple_repeat Simple_repeat 1 72 0 3 616 530 247 34 85 chr12 4118768 4118945 -117138585 - B4 SINE B4 0 292 125 3 616 288 0 0 0 chr12 4119207 4119239 -117138291 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 616 483 18 0 0 chr12 4119239 4119294 -117138236 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 616 288 0 0 0 chr12 4119341 4119373 -117138157 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 616 393 22 0 0 chr12 4119373 4119418 -117138112 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 616 352 329 109 6 chr12 4119722 4119878 -117137652 + MIR SINE MIR 25 196 -66 3 616 200 206 0 0 chr12 4120046 4120080 -117137450 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 3 616 1406 55 49 0 chr12 4120095 4120278 -117137252 + B2_Mm1a SINE B2 2 193 0 3 616 884 269 57 13 chr12 4120336 4120520 -117137010 - MT2A LTR ERVL -106 427 243 3 616 180 0 0 0 chr12 4120520 4120540 -117136990 + (CAG)n Simple_repeat Simple_repeat 1 20 0 3 616 884 269 57 13 chr12 4120540 4120585 -117136945 - MT2A LTR ERVL -291 242 188 3 616 579 267 53 37 chr12 4120582 4120769 -117136761 + B3 SINE B2 27 216 0 3 616 768 284 30 0 chr12 4120786 4120987 -117136543 - MT2A LTR ERVL -324 209 3 3 616 618 242 23 75 chr12 4121262 4121436 -117136094 - RSINE1 SINE B4 0 165 1 3 616 396 312 105 12 chr12 4121514 4121676 -117135854 + MLT1D LTR MaLR 1 177 -328 3 616 615 312 0 42 chr12 4121687 4121854 -117135676 - ID_B1 SINE B4 0 224 65 3 616 357 268 120 30 chr12 4121879 4122079 -117135451 + MLT1D LTR MaLR 288 505 0 3 616 233 338 104 60 chr12 4122137 4122386 -117135144 - L2b LINE L2 -108 3267 3008 3 616 543 301 126 27 chr12 4122601 4122864 -117134666 + B4A SINE B4 1 289 -3 3 616 1699 169 42 77 chr12 4122878 4123256 -117134274 - ORR1C2 LTR MaLR -17 367 3 3 616 180 152 0 0 chr12 4123256 4123289 -117134241 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 616 1080 58 43 14 chr12 4123313 4123453 -117134077 + B1_Mus1 SINE Alu 3 146 -2 3 616 930 183 104 10 chr12 4123543 4123736 -117133794 + B3 SINE B2 1 211 -5 3 616 1434 75 11 0 chr12 4123766 4123954 -117133576 + B2_Mm1t SINE B2 2 191 -2 3 616 561 55 0 0 chr12 4124152 4124225 -117133305 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 616 608 280 196 5 chr12 4124225 4124419 -117133111 - B4A SINE B4 -23 269 39 3 616 420 20 0 0 chr12 4124432 4124481 -117133049 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 616 428 197 148 70 chr12 4124494 4124636 -117132894 - B4 SINE B4 -115 177 25 3 616 450 325 13 26 chr12 4124839 4124994 -117132536 - MLT1C LTR MaLR -7 460 308 3 616 366 23 0 0 chr12 4125107 4125150 -117132380 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 616 1683 32 0 0 chr12 4125210 4125400 -117132130 + B2_Mm1a SINE B2 1 190 -3 3 616 483 304 52 43 chr12 4125839 4126138 -117131392 - MLT1D LTR MaLR -144 361 1 3 616 198 128 0 0 chr12 4126208 4126247 -117131283 + (C)n Simple_repeat Simple_repeat 1 39 0 3 616 517 152 113 26 chr12 4126247 4126362 -117131168 + B4 SINE B4 101 225 -67 3 616 517 243 0 69 chr12 4126350 4126364 -117131166 + ID SINE ID 77 88 -136 3 616 1110 62 0 27 chr12 4126364 4126500 -117131030 + B1_Mus2 SINE Alu 1 135 -12 3 616 234 0 0 0 chr12 4126500 4126526 -117131004 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 616 1110 62 0 27 chr12 4126526 4126539 -117130991 + B1_Mus2 SINE Alu 136 145 -2 3 616 782 180 0 14 chr12 4126542 4126683 -117130847 + B1_Mur1 SINE Alu 11 149 0 3 616 253 293 0 0 chr12 4126728 4126786 -117130744 + B4 SINE B4 218 275 -17 3 616 306 50 0 0 chr12 4126986 4127026 -117130504 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 616 975 171 28 0 chr12 4127047 4127223 -117130307 - B3 SINE B2 0 216 36 3 616 195 100 0 0 chr12 4127228 4127258 -117130272 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 616 192 309 22 77 chr12 4127789 4127880 -117129650 + MIRm SINE MIR 62 147 -129 3 616 386 249 10 29 chr12 4128520 4128628 -117128902 - PB1 SINE Alu -15 112 1 3 616 1392 189 154 43 chr12 4128745 4129121 -117128409 + MTD LTR MaLR 2 419 0 3 616 345 159 0 0 chr12 4129377 4129440 -117128090 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 616 254 204 0 115 chr12 4130103 4130164 -117127366 - ID4 SINE ID -7 76 23 3 616 909 227 79 0 chr12 4130191 4130394 -117127136 - ID_B1 SINE B4 -5 219 1 3 616 837 249 8 94 chr12 4131137 4131372 -117126158 + B3 SINE B2 1 215 -1 3 616 250 284 32 54 chr12 4131493 4131586 -117125944 + MT2B2 LTR ERVL 197 287 -297 3 616 360 301 13 93 chr12 4131561 4131691 -117125839 + ID_B1 SINE B4 87 215 -9 3 616 243 0 0 0 chr12 4131691 4131718 -117125812 + (CTAAA)n Simple_repeat Simple_repeat 3 29 0 3 616 189 74 0 0 chr12 4131719 4131746 -117125784 + (TAAG)n Simple_repeat Simple_repeat 1 27 0 3 616 360 301 13 93 chr12 4131746 4131763 -117125767 + ID_B1 SINE B4 216 224 0 3 616 859 215 16 70 chr12 4131766 4131951 -117125579 - B3 SINE B2 -23 193 19 3 616 240 254 85 0 chr12 4131959 4132018 -117125512 - ID4_ SINE ID -16 67 4 3 616 475 237 243 0 chr12 4132043 4132195 -117125335 - ID_B1 SINE B4 -1 223 35 3 616 28 0 0 0 chr12 4136140 4136168 -117121362 + AT_rich Low_complexity Low_complexity 1 28 0 3 616 475 278 65 36 chr12 4136170 4136308 -117121222 - ID_B1 SINE B4 -1 223 82 3 616 194 0 39 0 chr12 4136395 4136421 -117121109 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 616 414 222 0 36 chr12 4137821 4137905 -117119625 + ID4_ SINE ID 3 83 0 3 616 245 316 86 48 chr12 4138086 4138141 -117119389 - Tigger16b DNA Tigger -34 303 247 3 616 542 222 199 6 chr12 4138141 4138322 -117119208 - B3 SINE B2 0 216 1 3 616 245 316 86 48 chr12 4138322 4138452 -117119078 - Tigger16b DNA Tigger -91 246 112 3 616 1163 43 7 0 chr12 4138949 4139087 -117118443 + B1_Mus2 SINE Alu 3 141 -6 3 616 965 70 62 0 chr12 4140228 4140356 -117117174 + B1_Mus1 SINE Alu 2 137 -11 3 616 486 0 0 0 chr12 4140356 4140410 -117117120 + (CAAAA)n Simple_repeat Simple_repeat 4 57 0 3 616 450 235 50 20 chr12 4140703 4140803 -117116727 - 5S rRNA rRNA -18 103 1 3 616 23 54 0 0 chr12 4141592 4141629 -117115901 + AT_rich Low_complexity Low_complexity 1 37 0 3 616 442 293 82 57 chr12 4141668 4141827 -117115703 - RSINE1 SINE B4 0 165 3 3 616 246 253 230 6 chr12 4141936 4142036 -117115494 + PB1D7 SINE Alu 1 139 -10 3 616 964 157 20 0 chr12 4142103 4142250 -117115280 + B1_Mur4 SINE Alu 1 150 0 3 616 308 73 0 35 chr12 4142343 4142400 -117115130 + (TTTTTG)n Simple_repeat Simple_repeat 3 57 0 3 616 510 231 108 0 chr12 4142401 4142531 -117114999 - ID_B1 SINE B4 -1 223 80 3 616 261 148 0 54 chr12 4142961 4143054 -117114476 - RMER17C LTR ERVK -137 273 186 3 616 495 0 0 0 chr12 4143059 4143114 -117114416 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 3 616 875 97 0 0 chr12 4143115 4143239 -117114291 - B1_Mus2 SINE Alu -12 135 12 3 616 686 201 150 16 chr12 4143296 4143483 -117114047 - B3 SINE B2 -4 212 1 3 616 280 298 184 10 chr12 4143838 4144045 -117113485 - L2b LINE L2 -192 3183 2941 3 616 216 171 0 0 chr12 4144050 4144091 -117113439 + CT-rich Low_complexity Low_complexity 2 42 0 3 616 677 139 153 15 chr12 4144130 4144261 -117113269 - B1_Mur2 SINE Alu 0 149 1 3 616 418 232 11 0 chr12 4144931 4145026 -117112504 - PB1D10 SINE Alu -21 96 1 3 616 368 319 34 17 chr12 4145747 4145865 -117111665 - MLT1A1 LTR MaLR -21 387 268 3 616 1409 217 127 8 chr12 4146019 4146390 -117111140 - MTD LTR MaLR -2 417 3 3 616 592 257 103 3 chr12 4146643 4146807 -117110723 - ID_B1 SINE B4 -46 246 67 3 616 1210 42 0 7 chr12 4146822 4146966 -117110564 - B1_Mus2 SINE Alu -2 145 3 3 616 4171 109 44 75 chr12 4146967 4147740 -117109790 - RMER6A LTR ERVK -7 749 1 3 616 324 280 199 18 chr12 4147762 4147933 -117109597 + B4A SINE B4 56 257 -35 3 616 492 126 0 0 chr12 4148485 4148572 -117108958 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 616 614 232 60 47 chr12 4148572 4148710 -117108820 - B4A SINE B4 -11 281 141 4 616 3495 30 139 0 chr12 4148854 4149287 -117108243 - MT2_Mm LTR ERVL 0 493 1 4 616 777 219 70 20 chr12 4149718 4149918 -117107612 + B3 SINE B2 4 213 -3 4 616 218 32 0 31 chr12 4150014 4150046 -117107484 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 4 616 1255 34 7 0 chr12 4150046 4150192 -117107338 - B1_Mm SINE Alu 0 147 1 4 616 21 0 0 0 chr12 4150325 4150346 -117107184 + AT_rich Low_complexity Low_complexity 1 21 0 4 616 1008 229 47 9 chr12 4151429 4151641 -117105889 + ID_B1 SINE B4 3 222 -2 4 616 210 122 0 0 chr12 4151830 4151849 -117105681 + (TA)n Simple_repeat Simple_repeat 2 20 0 4 616 333 0 0 0 chr12 4151849 4151886 -117105644 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 616 210 122 0 0 chr12 4151886 4151907 -117105623 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 616 417 39 0 0 chr12 4151911 4151962 -117105568 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4 616 276 142 8 101 chr12 4152413 4152898 -117104632 + C-rich Low_complexity Low_complexity 1 440 0 4 616 300 179 45 45 chr12 4152899 4153010 -117104520 + (CACCC)n Simple_repeat Simple_repeat 5 115 0 4 616 22 0 0 0 chr12 4153370 4153392 -117104138 + GC_rich Low_complexity Low_complexity 1 22 0 4 616 198 359 15 30 chr12 4153702 4153768 -117103762 - MIR SINE MIR -165 97 33 4 616 863 157 8 0 chr12 4153929 4154063 -117103467 + B1_Mus2 SINE Alu 2 136 -11 4 616 284 0 0 27 chr12 4154064 4154101 -117103429 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 616 370 301 0 0 chr12 4154122 4154225 -117103305 + MTEa LTR MaLR 251 353 -26 4 616 369 0 0 0 chr12 4154226 4154267 -117103263 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 616 470 312 49 7 chr12 4154309 4154451 -117103079 + B4A SINE B4 68 215 -77 4 616 264 276 133 0 chr12 4154530 4154628 -117102902 + L1M5 LINE L1 2486 2596 -3550 4 616 1349 140 39 0 chr12 4154834 4155041 -117102489 + B3 SINE B2 2 216 0 4 616 1582 318 130 14 chr12 4155107 4155831 -117101699 + MER45B DNA Tip100 151 958 -82 4 616 253 0 0 51 chr12 4155851 4155890 -117101640 + (TTA)n Simple_repeat Simple_repeat 2 38 0 4 616 531 188 83 0 chr12 4155890 4155986 -117101544 - B1_Mus1 SINE Alu -10 138 35 4 616 324 0 0 0 chr12 4155995 4156031 -117101499 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 616 919 161 194 32 chr12 4156060 4156246 -117101284 + B3 SINE B2 1 216 0 4 616 606 255 39 27 chr12 4156390 4156552 -117100978 - B3A SINE B2 -34 161 9 4 616 639 302 27 0 chr12 4156568 4156717 -117100813 - RSINE1 SINE B4 -6 159 7 4 616 1127 39 0 0 chr12 4156795 4156924 -117100606 - B1_Mus2 SINE Alu -16 131 3 4 616 1377 82 22 0 chr12 4157195 4157379 -117100151 + B2_Mm2 SINE B2 2 189 -6 4 616 206 156 22 0 chr12 4157956 4158001 -117099529 + GA-rich Low_complexity Low_complexity 3 48 0 4 616 340 209 126 145 chr12 4158353 4158554 -117098976 - RMER10A LTR ERVL -144 298 128 4 616 333 0 0 0 chr12 4158554 4158591 -117098939 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 616 340 209 126 145 chr12 4158591 4158658 -117098872 - RMER10A LTR ERVL -315 127 35 4 616 1411 76 5 21 chr12 4158660 4158849 -117098681 - B2_Mm1a SINE B2 -7 186 1 4 616 1218 146 56 19 chr12 4159513 4159729 -117097801 - ORR1C1 LTR MaLR -11 367 144 4 616 416 188 86 38 chr12 4160032 4160137 -117097393 - PB1D10 SINE Alu -7 110 1 4 616 605 317 65 5 chr12 4160200 4160400 -117097130 + ID_B1 SINE B4 5 216 -8 4 616 532 247 56 43 chr12 4160827 4160988 -117096542 - B4 SINE B4 -129 163 1 4 616 1997 70 8 0 chr12 4161053 4161343 -117096187 + L1_Mus1 LINE L1 6300 6567 0 4 616 715 124 24 32 chr12 4161448 4161573 -117095957 - URR1B DNA MER1_type 0 225 102 4 616 231 300 195 24 chr12 4162036 4162200 -117095330 + L3b LINE CR1 43 234 -248 4 616 896 159 7 0 chr12 4163894 4164032 -117093498 - B1_Mus2 SINE Alu -8 139 1 4 616 306 0 0 0 chr12 4164199 4164233 -117093297 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 616 1149 52 0 0 chr12 4164235 4164369 -117093161 - B1_Mm SINE Alu -13 134 1 4 616 1455 74 5 0 chr12 4164370 4164559 -117092971 - B2_Mm1t SINE B2 0 193 4 4 616 787 166 20 20 chr12 4164678 4164826 -117092704 + B1_Mur2 SINE Alu 1 148 -1 4 616 219 167 0 0 chr12 4164849 4164891 -117092639 + GA-rich Low_complexity Low_complexity 2 43 0 4 616 300 283 58 65 chr12 4165492 4165647 -117091883 + L1MCa LINE L1 1826 1979 -4529 4 616 324 115 0 0 chr12 4165688 4165708 -117091822 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 616 483 18 0 0 chr12 4165708 4165764 -117091766 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 4 616 324 115 0 0 chr12 4165764 4165795 -117091735 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 616 535 218 45 58 chr12 4165795 4165951 -117091579 - ID_B1 SINE B4 -1 223 70 4 616 849 131 210 54 chr12 4165998 4166184 -117091346 + B3 SINE B2 2 216 0 4 616 23 0 0 0 chr12 4166184 4166207 -117091323 + AT_rich Low_complexity Low_complexity 1 23 0 4 616 268 234 28 9 chr12 4166426 4166534 -117090996 + CT-rich Low_complexity Low_complexity 1 110 0 4 616 532 211 11 0 chr12 4166537 4166656 -117090874 - PB1D10 SINE Alu -23 126 2 4 616 212 280 53 0 chr12 4166976 4167051 -117090479 - L2b LINE L2 -8 3367 3289 4 616 196 30 0 57 chr12 4168527 4168562 -117088968 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 4 616 1188 68 0 0 chr12 4168564 4168710 -117088820 - B1_Mus2 SINE Alu 0 147 2 4 616 258 105 0 0 chr12 4169005 4169043 -117088487 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 616 1170 174 56 0 chr12 4171780 4171975 -117085555 + B3 SINE B2 2 207 -9 4 616 456 305 44 10 chr12 4173725 4173930 -117083600 - CR1_Mam LINE CR1 -759 1445 1234 4 616 619 117 18 26 chr12 4174168 4174282 -117083248 + URR1A DNA MER1_type 78 190 -36 4 616 1466 60 33 0 chr12 4174481 4174665 -117082865 - B2_Mm1a SINE B2 -3 190 1 4 616 1280 79 56 6 chr12 4174674 4174853 -117082677 - B2_Mm2 SINE B2 -7 188 1 4 616 713 238 0 0 chr12 4174942 4175085 -117082445 - ID_B1 SINE B4 0 224 82 4 616 527 312 112 19 chr12 4175388 4175657 -117081873 - B4A SINE B4 0 292 1 4 616 274 248 175 8 chr12 4176011 4176137 -117081393 + B2_Mm2 SINE B2 23 169 -26 4 616 441 0 0 0 chr12 4176602 4176651 -117080879 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 616 773 234 25 128 chr12 4176710 4176945 -117080585 - B4 SINE B4 -79 213 3 4 616 1643 48 0 0 chr12 4176946 4177152 -117080378 - L1Md_F2 LINE L1 0 6582 6377 4 616 953 296 172 21 chr12 4177153 4177636 -117079894 - L1MB4 LINE L1 -41 6139 5584 4 616 249 292 34 0 chr12 4177640 4177729 -117079801 - L1M5 LINE L1 -510 5614 5523 4 616 186 277 108 0 chr12 4177990 4178055 -117079475 + MIRb SINE MIR 88 159 -109 4 616 1176 48 0 33 chr12 4180220 4180371 -117077159 - B1_Mus2 SINE Alu 0 147 2 4 616 542 193 51 34 chr12 4180947 4181065 -117076465 - PB1D7 SINE Alu 0 120 1 4 616 300 295 79 18 chr12 4181065 4181179 -117076351 + MIRm SINE MIR 45 165 -111 4 616 627 251 64 51 chr12 4181197 4181375 -117076155 + B3A SINE B2 1 171 -27 4 616 390 101 0 0 chr12 4181375 4181444 -117076086 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 616 482 273 36 109 chr12 4181444 4181458 -117076072 + B3 SINE B2 165 178 -38 4 616 218 224 0 0 chr12 4182678 4182727 -117074803 + B3A SINE B2 2 50 -148 4 616 2096 213 34 41 chr12 4182728 4183289 -117074241 - RLTR31_Mur LTR ERVK 0 553 36 4 616 1287 34 0 0 chr12 4183289 4183436 -117074094 + B1_Mus2 SINE Alu 1 147 0 4 616 1238 236 76 96 chr12 4183436 4183558 -117073972 - RLTR31_Mur LTR ERVK -341 104 1 4 616 560 190 146 42 chr12 4183558 4183698 -117073832 + B3 SINE B2 52 208 -8 4 616 252 0 0 0 chr12 4183804 4183832 -117073698 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 616 273 253 147 0 chr12 4184154 4184229 -117073301 - MER3 DNA MER1_type -5 204 119 4 616 301 313 0 0 chr12 4184278 4184345 -117073185 - ID SINE ID -155 69 3 4 616 333 326 0 0 chr12 4184346 4184438 -117073092 - MER3 DNA MER1_type -82 127 36 4 616 254 299 0 65 chr12 4185220 4185406 -117072124 + (TAGG)n Simple_repeat Simple_repeat 1 174 0 4 616 216 275 0 0 chr12 4185635 4185806 -117071724 + (CA)n Simple_repeat Simple_repeat 2 172 0 4 616 216 0 0 0 chr12 4185891 4185915 -117071615 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 616 195 42 0 0 chr12 4186048 4186072 -117071458 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 616 377 90 15 0 chr12 4186122 4186189 -117071341 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 616 215 230 0 57 chr12 4186201 4186307 -117071223 + (CA)n Simple_repeat Simple_repeat 1 100 0 4 616 396 0 0 0 chr12 4186325 4186369 -117071161 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 616 195 42 0 0 chr12 4186501 4186525 -117071005 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 616 341 95 16 0 chr12 4186574 4186637 -117070893 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 616 282 192 0 80 chr12 4186649 4186762 -117070768 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 616 252 0 0 0 chr12 4186787 4186815 -117070715 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 616 195 42 0 0 chr12 4186947 4186971 -117070559 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 616 198 0 0 0 chr12 4187020 4187042 -117070488 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 616 264 175 9 88 chr12 4187054 4187167 -117070363 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 616 185 31 0 86 chr12 4187187 4187222 -117070308 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 616 195 42 0 0 chr12 4187252 4187276 -117070254 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 616 203 29 0 81 chr12 4187473 4187510 -117070020 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 616 195 42 0 0 chr12 4187642 4187666 -117069864 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 616 395 87 14 0 chr12 4187716 4187785 -117069745 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 616 252 183 0 103 chr12 4187797 4187913 -117069617 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 616 270 0 0 0 chr12 4187941 4187971 -117069559 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 616 203 125 0 51 chr12 4188147 4188206 -117069324 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 616 255 330 113 0 chr12 4189705 4189720 -117067810 - B1_Mur3 SINE Alu -1 148 21 4 616 419 290 0 0 chr12 4189720 4189820 -117067710 - ID_B1 SINE B4 -23 201 102 4 616 483 267 220 30 chr12 4189886 4190118 -117067412 - B4 SINE B4 -16 276 1 4 616 270 257 83 65 chr12 4190795 4190903 -117066627 + MTD LTR MaLR 11 120 -299 4 616 513 244 27 82 chr12 4190902 4191049 -117066481 - B1_Mur4 SINE Alu 0 150 12 4 616 526 214 9 0 chr12 4191057 4191169 -117066361 + MTD LTR MaLR 105 217 -202 4 616 822 94 14 7 chr12 4191319 4191459 -117066071 + (GGAA)n Simple_repeat Simple_repeat 3 143 0 5 616 24 0 0 0 chr12 4193399 4193423 -117064107 + AT_rich Low_complexity Low_complexity 1 24 0 5 616 791 255 66 0 chr12 4193423 4193619 -117063911 - MER58A DNA MER1_type -15 209 1 5 617 216 0 0 0 chr12 4195397 4195421 -117062109 + (T)n Simple_repeat Simple_repeat 1 24 0 5 617 543 266 95 82 chr12 4195983 4196384 -117061146 - RMER10A LTR ERVL -25 417 12 5 617 857 289 148 2 chr12 4197065 4197399 -117060131 - MTD LTR MaLR -23 396 19 5 617 216 0 0 0 chr12 4197399 4197423 -117060107 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 617 857 292 178 3 chr12 4197423 4197437 -117060093 - MTD LTR MaLR -401 18 3 5 617 207 0 0 0 chr12 4197614 4197637 -117059893 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 617 1188 43 0 0 chr12 4197640 4197780 -117059750 - B1_Mus1 SINE Alu -6 142 3 5 617 549 208 228 48 chr12 4197863 4198030 -117059500 - B3A SINE B2 -1 197 1 5 617 473 277 0 116 chr12 4198540 4198695 -117058835 + B1F1 SINE Alu 6 142 -7 5 617 880 188 193 0 chr12 4199986 4200167 -117057363 + B3 SINE B2 1 216 0 5 617 315 0 0 0 chr12 4201521 4201556 -117055974 + (A)n Simple_repeat Simple_repeat 1 35 0 5 617 207 270 248 31 chr12 4202028 4202383 -117055147 - L2a LINE L2 -61 3365 2934 5 617 616 323 151 17 chr12 4202426 4202949 -117054581 - L2a LINE L2 -587 2832 2240 5 617 483 18 0 0 chr12 4203724 4203780 -117053750 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 5 617 690 286 79 79 chr12 4205184 4205461 -117052069 + B4 SINE B4 8 284 -8 5 617 183 42 0 0 chr12 4207425 4207449 -117050081 + (TTTAA)n Simple_repeat Simple_repeat 4 27 0 5 617 452 301 40 20 chr12 4207483 4207527 -117050003 + B4 SINE B4 43 194 -98 5 617 713 143 0 0 chr12 4207527 4207632 -117049898 + B1_Mur4 SINE Alu 2 106 -44 5 617 254 29 0 28 chr12 4207679 4207715 -117049815 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 5 617 334 209 65 11 chr12 4207857 4207949 -117049581 + ID_B1 SINE B4 1 97 -127 5 617 234 217 100 14 chr12 4207937 4207961 -117049569 + PB1D7 SINE Alu 41 115 -4 5 617 263 156 0 0 chr12 4207961 4208006 -117049524 + ID_B1 SINE B4 176 220 -4 5 617 332 319 187 40 chr12 4208013 4208238 -117049292 + L1ME3B LINE L1 5607 5864 -376 5 617 628 200 26 24 chr12 4209718 4209895 -117047635 - MTD LTR MaLR -12 407 172 5 617 380 279 85 0 chr12 4216003 4216132 -117041398 + B1F SINE Alu 1 140 -9 5 617 222 37 0 0 chr12 4216140 4216167 -117041363 + (CCAA)n Simple_repeat Simple_repeat 4 30 0 5 617 375 281 54 116 chr12 4216202 4216423 -117041107 + ID_B1 SINE B4 2 223 -69 5 617 1148 197 158 68 chr12 4218257 4218290 -117039240 + MTD LTR MaLR 5 35 -384 5 617 1030 163 111 29 chr12 4218290 4218498 -117039032 + URR1B DNA MER1_type 1 225 0 5 617 1148 197 158 68 chr12 4218498 4218523 -117039007 + MTD LTR MaLR 36 54 -365 5 617 2384 163 122 35 chr12 4218523 4219039 -117038491 - RLTR31_Mm LTR ERVK 0 561 1 5 617 1148 197 158 68 chr12 4219039 4219360 -117038170 + MTD LTR MaLR 55 419 0 5 617 699 193 96 7 chr12 4222093 4222229 -117035301 + B1_Mur2 SINE Alu 1 148 -1 5 617 882 148 0 7 chr12 4222550 4222693 -117034837 + B1_Mus2 SINE Alu 5 146 -1 5 617 5684 134 69 15 chr12 4223014 4224020 -117033510 + L1_Mur3 LINE L1 3327 4386 -1494 5 617 2072 266 45 17 chr12 4224015 4225033 -117032497 + Lx5 LINE L1 6093 7032 -18 5 617 21 0 0 0 chr12 4225043 4225064 -117032466 + AT_rich Low_complexity Low_complexity 1 21 0 5 617 335 311 127 46 chr12 4225200 4225547 -117031983 + L1MEg LINE L1 1014 1388 -4696 5 617 662 191 8 22 chr12 4225577 4225711 -117031819 - B1_Mus2 SINE Alu -1 146 15 5 617 285 247 31 92 chr12 4225623 4225721 -117031809 - MT2B LTR ERVL -344 257 166 5 617 405 0 0 0 chr12 4228737 4228782 -117028748 + (CAA)n Simple_repeat Simple_repeat 1 45 0 5 617 366 210 0 36 chr12 4228905 4228989 -117028541 - PB1D10 SINE Alu -29 88 8 5 617 306 50 0 0 chr12 4229421 4229461 -117028069 + (CATA)n Simple_repeat Simple_repeat 4 43 0 5 617 641 250 48 62 chr12 4229519 4229728 -117027802 - MER2 DNA MER2_type -21 324 119 5 617 891 97 0 0 chr12 4229726 4229860 -117027670 + B1_Mus1 SINE Alu 9 142 -6 5 617 960 116 20 7 chr12 4231181 4231329 -117026201 - B1_Mur4 SINE Alu 0 150 1 5 617 671 132 234 35 chr12 4231764 4231961 -117025569 - MTD LTR MaLR -20 399 164 5 617 698 228 138 67 chr12 4231958 4232226 -117025304 - MTD LTR MaLR -132 287 1 5 617 667 203 60 8 chr12 4232269 4232403 -117025127 - B1_Mur1 SINE Alu -6 143 3 5 617 1211 48 0 0 chr12 4234606 4234753 -117022777 + B1_Mm SINE Alu 1 147 0 5 617 243 88 0 0 chr12 4234753 4234787 -117022743 + (A)n Simple_repeat Simple_repeat 1 34 0 5 617 361 315 60 6 chr12 4235212 4235378 -117022152 - B3A SINE B2 -19 179 5 5 617 492 252 8 73 chr12 4235526 4235650 -117021880 + RSINE1 SINE B4 3 118 -47 5 617 1036 211 112 26 chr12 4235670 4235937 -117021593 - MTD LTR MaLR 0 419 130 5 617 1123 191 183 9 chr12 4237043 4237366 -117020164 + RLTR12A LTR ERVK 132 510 -58 5 617 212 318 0 57 chr12 4237389 4237459 -117020071 - RSINE1 SINE B4 -89 76 11 5 617 782 144 14 7 chr12 4239027 4239167 -117018363 - B1_Mur3 SINE Alu 0 149 9 5 617 244 264 0 53 chr12 4239332 4239408 -117018122 - BC1_Mm scRNA scRNA -74 78 7 5 617 507 197 108 16 chr12 4239442 4239571 -117017959 - B1_Mur1 SINE Alu -3 146 6 5 617 405 184 35 52 chr12 4240051 4240124 -117017406 - URR1B DNA MER1_type -24 201 131 5 617 2497 160 42 29 chr12 4240124 4240325 -117017205 + RLTR11A2 LTR ERVK 1 211 -316 5 617 5234 89 16 43 chr12 4240325 4241157 -117016373 - RMER17D2 LTR ERVK 0 809 1 5 617 2497 160 42 29 chr12 4241157 4241475 -117016055 + RLTR11A2 LTR ERVK 212 527 0 5 617 508 173 194 0 chr12 4241475 4241587 -117015943 - URR1A DNA MER1_type -87 139 1 5 617 458 236 28 9 chr12 4242623 4242730 -117014800 + PB1D7 SINE Alu 1 109 -11 5 617 406 242 63 77 chr12 4242980 4243123 -117014407 + B3A SINE B2 20 160 -38 5 617 388 234 47 10 chr12 4243160 4243264 -117014266 + B1_Mur3 SINE Alu 4 106 -14 5 617 1181 107 89 128 chr12 4243560 4243641 -117013889 + URR1A DNA MER1_type 1 100 -126 5 617 1130 45 0 0 chr12 4243641 4243774 -117013756 + B1_Mus2 SINE Alu 2 134 -13 5 617 1181 107 89 128 chr12 4243774 4243927 -117013603 + URR1A DNA MER1_type 101 226 0 5 617 234 319 28 0 chr12 4244379 4244451 -117013079 - ID4 SINE ID -8 75 2 5 617 276 138 0 44 chr12 4244458 4244526 -117013004 + CT-rich Low_complexity Low_complexity 3 67 0 5 617 1087 113 6 0 chr12 4244529 4244697 -117012833 - B2_Mm1a SINE B2 -24 169 1 5 617 1152 61 0 7 chr12 4244779 4244927 -117012603 - B1_Mus1 SINE Alu -1 147 1 5 617 833 234 11 0 chr12 4245283 4245471 -117012059 + B3 SINE B2 3 192 -24 5 617 654 37 122 0 chr12 4246164 4246271 -117011259 - B2_Mm1t SINE B2 0 193 74 5 617 405 0 0 0 chr12 4246826 4246871 -117010659 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 617 237 65 0 0 chr12 4249423 4249454 -117008076 + (T)n Simple_repeat Simple_repeat 1 31 0 5 617 189 0 0 0 chr12 4250371 4250392 -117007138 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 5 617 330 78 10 0 chr12 4251609 4251684 -117005846 - B1_Mm SINE Alu 0 149 75 5 617 914 48 0 53 chr12 4251684 4251816 -117005714 - B1_Mus2 SINE Alu -16 131 7 5 617 249 109 0 0 chr12 4252406 4252452 -117005078 + (C)n Simple_repeat Simple_repeat 1 46 0 5 617 791 135 15 0 chr12 4252469 4252602 -117004928 - B1_Mus1 SINE Alu -8 140 6 5 617 239 306 14 0 chr12 4252783 4252855 -117004675 - ID4 SINE ID 0 83 11 5 617 192 302 111 30 chr12 4253376 4253574 -117003956 - MIRb SINE MIR -29 239 26 5 617 656 228 141 6 chr12 4254127 4254290 -117003240 + B3A SINE B2 3 187 -11 5 617 444 111 0 0 chr12 4254303 4254375 -117003155 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 617 198 0 0 0 chr12 4254452 4254474 -117003056 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 5 617 446 268 183 18 chr12 4254815 4255206 -117002324 + L1MEc LINE L1 850 1220 -5505 5 617 300 230 44 44 chr12 4255764 4255855 -117001675 + RSINE1 SINE B4 13 103 -62 5 617 300 238 148 0 chr12 4255939 4256040 -117001490 + L1MEc LINE L1 1381 1496 -5229 5 617 608 279 70 0 chr12 4256044 4256202 -117001328 + ID_B1 SINE B4 1 169 -55 5 617 387 0 0 0 chr12 4256217 4256260 -117001270 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 617 252 0 0 0 chr12 4256260 4256287 -117001243 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 617 494 263 124 0 chr12 4256326 4256512 -117001018 + L1MEc LINE L1 1532 1740 -4985 5 617 854 254 157 17 chr12 4256652 4257179 -117000351 + L1MEc LINE L1 1984 2609 -4116 5 617 982 146 7 0 chr12 4257179 4257323 -117000207 + B1_Mur1 SINE Alu 5 149 0 5 617 854 266 21 67 chr12 4257323 4257452 -117000078 + L1MEc LINE L1 2610 2731 -3913 5 617 6283 72 9 11 chr12 4257452 4258290 -116999240 + Lx3_Mus LINE L1 6168 7004 -5 5 617 272 265 14 70 chr12 4258290 4258311 -116999219 + L1MEc LINE L1 2732 2752 -3892 5 617 437 218 18 0 chr12 4258454 4258564 -116998966 + ID_B1 SINE B4 112 223 -1 5 617 467 254 7 73 chr12 4258745 4258881 -116998649 - RSINE1 SINE B4 -36 129 3 5 617 656 210 196 17 chr12 4258899 4259078 -116998452 - B3 SINE B2 0 216 6 5 617 589 283 38 21 chr12 4261046 4261281 -116996249 - L2 LINE L2 -861 2558 2320 5 617 450 289 101 36 chr12 4261330 4261343 -116996187 - B4 SINE B4 -10 282 270 5 617 279 0 0 0 chr12 4261343 4261374 -116996156 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 617 450 289 101 36 chr12 4261374 4261579 -116995951 - B4 SINE B4 -23 269 50 5 617 456 269 25 0 chr12 4261607 4261726 -116995804 - ID_B1 SINE B4 0 224 103 5 617 361 272 88 0 chr12 4261609 4261745 -116995785 - B1F2 SINE Alu -1 148 1 5 617 223 306 166 47 chr12 4261745 4262064 -116995466 - L2 LINE L2 -1114 2305 1949 5 617 182 191 0 21 chr12 4262178 4262226 -116995304 + CT-rich Low_complexity Low_complexity 4 50 0 5 617 680 289 70 10 chr12 4264273 4264472 -116993058 - ID_B1 SINE B4 0 224 14 6 617 515 174 3 38 chr12 4264501 4264620 -116992910 - L1ME1 LINE L1 -1855 5930 5813 6 617 367 122 40 13 chr12 4265314 4265389 -116992141 + T-rich Low_complexity Low_complexity 3 79 0 6 617 1213 41 0 7 chr12 4265389 4265536 -116991994 - B1_Mus2 SINE Alu 0 147 2 6 617 300 266 199 38 chr12 4265621 4265883 -116991647 - L1MEc LINE L1 -5736 664 361 6 617 507 246 23 16 chr12 4266236 4266364 -116991166 - B3 SINE B2 0 216 88 6 617 251 284 30 0 chr12 4266737 4266804 -116990726 - B3A SINE B2 -101 97 29 6 617 888 186 14 39 chr12 4268172 4268384 -116989146 - B3 SINE B2 0 195 1 6 617 796 145 70 28 chr12 4269261 4269403 -116988127 - B1_Mur4 SINE Alu 0 150 3 6 617 1056 188 96 0 chr12 4269547 4269744 -116987786 - B3 SINE B2 0 216 1 6 617 725 233 0 81 chr12 4269749 4269959 -116987571 - B2_Mm2 SINE B2 -2 193 1 6 617 21 0 0 0 chr12 4270018 4270039 -116987491 + AT_rich Low_complexity Low_complexity 1 21 0 6 617 345 239 0 0 chr12 4270113 4270180 -116987350 - PB1D10 SINE Alu -19 98 32 6 617 301 326 159 0 chr12 4270232 4270370 -116987160 - RSINE1 SINE B4 -4 161 2 6 617 247 234 46 15 chr12 4271380 4271445 -116986085 + Charlie14a DNA MER1_type 4 70 -1094 6 617 301 253 32 0 chr12 4271471 4271566 -116985964 + MER103 DNA DNA 24 121 -45 6 617 247 369 58 0 chr12 4271901 4272004 -116985526 - PB1 SINE Alu -18 109 1 6 617 225 178 0 0 chr12 4272109 4272154 -116985376 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 617 180 0 0 0 chr12 4272256 4272276 -116985254 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 6 617 825 85 17 0 chr12 4272901 4273019 -116984511 + PB1D9 SINE Alu 1 120 0 6 617 207 0 0 0 chr12 4273032 4273055 -116984475 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 6 617 1219 48 0 0 chr12 4273693 4273839 -116983691 - B1_Mus2 SINE Alu 0 147 2 6 617 22 35 0 0 chr12 4275484 4275513 -116982017 + AT_rich Low_complexity Low_complexity 1 29 0 6 617 846 255 73 4 chr12 4275612 4275872 -116981658 - B4A SINE B4 -10 282 5 6 617 748 269 5 39 chr12 4276016 4276221 -116981309 - B3A SINE B2 0 198 1 6 617 259 286 0 0 chr12 4276295 4276358 -116981172 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 617 277 227 34 0 chr12 4276402 4276490 -116981040 + C-rich Low_complexity Low_complexity 4 94 0 6 617 662 231 0 11 chr12 4276473 4276648 -116980882 + CT-rich Low_complexity Low_complexity 5 177 0 6 617 461 133 18 60 chr12 4276701 4276869 -116980661 + CT-rich Low_complexity Low_complexity 3 163 0 6 617 764 191 6 0 chr12 4276916 4277089 -116980441 + CT-rich Low_complexity Low_complexity 4 177 0 6 617 189 268 0 0 chr12 4277079 4277135 -116980395 + C-rich Low_complexity Low_complexity 1 56 0 6 617 33 43 0 0 chr12 4277469 4277516 -116980014 + AT_rich Low_complexity Low_complexity 1 47 0 6 617 1003 172 22 10 chr12 4278423 4278622 -116978908 - B3 SINE B2 -10 185 2 6 617 685 254 204 27 chr12 4278952 4279280 -116978250 + MLT1B LTR MaLR 1 386 -4 6 617 212 229 21 0 chr12 4279318 4279366 -116978164 - ID4_ SINE ID -1 82 34 6 617 552 227 0 140 chr12 4279438 4279602 -116977928 + B1F SINE Alu 9 149 0 6 617 480 254 56 24 chr12 4279831 4279956 -116977574 - B3 SINE B2 -14 202 74 6 617 277 309 16 31 chr12 4279962 4280089 -116977441 - B4A SINE B4 -53 239 115 6 617 267 175 0 17 chr12 4280199 4280257 -116977273 - B3 SINE B2 -2 214 158 6 617 1020 149 24 72 chr12 4280259 4280384 -116977146 + ORR1D1 LTR MaLR 32 161 -213 6 617 872 46 121 8 chr12 4280384 4280516 -116977014 + L1Md_F2 LINE L1 6434 6580 -2 6 617 1020 233 34 105 chr12 4280516 4280717 -116976813 + ORR1D1 LTR MaLR 162 324 -70 6 617 1196 48 0 0 chr12 4280717 4280863 -116976667 - B1_Mus2 SINE Alu -1 146 1 6 617 669 291 40 128 chr12 4280863 4280933 -116976597 + ORR1D1 LTR MaLR 325 394 0 6 617 535 222 246 0 chr12 4280944 4281070 -116976460 - B3 SINE B2 -57 159 3 6 617 374 228 38 12 chr12 4281463 4281543 -116975987 + B1_Mus2 SINE Alu 1 82 -65 6 617 1149 62 0 7 chr12 4281566 4281713 -116975817 + B1_Mm SINE Alu 1 146 -1 6 617 204 67 0 0 chr12 4281714 4281744 -116975786 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 6 617 210 195 0 0 chr12 4282060 4282077 -116975453 + (TG)n Simple_repeat Simple_repeat 2 18 0 6 617 240 35 0 0 chr12 4282077 4282106 -116975424 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 617 210 195 0 0 chr12 4282106 4282129 -116975401 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 617 261 194 44 15 chr12 4283146 4283214 -116974316 - ID_B1 SINE B4 -24 200 131 6 617 257 264 61 121 chr12 4283687 4283786 -116973744 - PB1D10 SINE Alu -17 100 8 6 617 633 275 42 0 chr12 4283725 4283867 -116973663 - ID_B1 SINE B4 -69 155 8 6 617 352 292 53 53 chr12 4284662 4284756 -116972774 - B4 SINE B4 -196 96 3 6 617 222 264 0 0 chr12 4284874 4284937 -116972593 + PB1 SINE Alu 55 123 -4 6 617 253 270 19 45 chr12 4285072 4285227 -116972303 + GA-rich Low_complexity Low_complexity 4 154 0 6 617 343 235 183 38 chr12 4286321 4286507 -116971023 - B3 SINE B2 -2 214 2 6 617 5074 54 11 23 chr12 4286981 4287641 -116969889 - L1_Mus2 LINE L1 -2 6564 5913 6 617 7339 69 2 1 chr12 4287648 4288932 -116968598 + L1_Mus1 LINE L1 5283 6567 0 6 617 454 290 92 0 chr12 4289316 4289447 -116968083 - ID_B1 SINE B4 0 224 82 6 617 628 216 8 0 chr12 4290351 4290476 -116967054 + ID_B1 SINE B4 95 220 -4 6 617 1227 41 0 0 chr12 4290554 4290701 -116966829 - B1_Mus2 SINE Alu 0 147 1 6 617 830 130 30 0 chr12 4291147 4291278 -116966252 + B1_Mus2 SINE Alu 13 147 0 6 617 1291 110 11 0 chr12 4291418 4291609 -116965921 + B2_Mm1a SINE B2 1 193 0 6 617 22 70 0 0 chr12 4291705 4291748 -116965782 + AT_rich Low_complexity Low_complexity 1 43 0 6 617 476 258 37 6 chr12 4292046 4292210 -116965320 - L1ME3 LINE L1 -313 5849 5681 6 617 307 240 32 162 chr12 4293099 4293253 -116964277 + L1M5 LINE L1 5106 5239 -907 6 617 423 0 0 0 chr12 4293276 4293323 -116964207 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 617 311 333 0 0 chr12 4293537 4293645 -116963885 + L1M5 LINE L1 5586 5693 -480 6 617 34 0 0 0 chr12 4293665 4293699 -116963831 + AT_rich Low_complexity Low_complexity 1 34 0 6 617 508 263 68 26 chr12 4294550 4294592 -116962938 + CYRA11_Mm Unknown Y-chromosome 122 171 -446 6 617 1144 132 0 0 chr12 4294592 4294759 -116962771 - URR1A DNA MER1_type 0 226 60 6 617 21 71 0 0 chr12 4296533 4296575 -116960955 + AT_rich Low_complexity Low_complexity 1 42 0 6 617 270 158 0 21 chr12 4298021 4298086 -116959444 - L1MB7 LINE L1 -6 6178 6117 6 617 360 333 18 79 chr12 4298577 4298691 -116958839 - PB1D10 SINE Alu -7 110 4 6 617 296 256 61 0 chr12 4299310 4299392 -116958138 - MER3 DNA MER1_type -57 152 66 6 617 243 333 14 14 chr12 4300028 4300098 -116957432 - ID4 SINE ID 0 83 14 6 617 448 214 19 19 chr12 4300698 4300803 -116956727 - PB1D10 SINE Alu -11 106 2 6 617 360 0 0 0 chr12 4300961 4301001 -116956529 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 6 617 1627 26 0 20 chr12 4301054 4301251 -116956279 + B2_Mm1a SINE B2 1 193 0 6 617 180 111 0 0 chr12 4301368 4301395 -116956135 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 617 32 57 0 0 chr12 4301538 4301591 -116955939 + AT_rich Low_complexity Low_complexity 1 53 0 6 617 315 49 0 0 chr12 4301750 4301791 -116955739 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 617 525 297 0 0 chr12 4301804 4301915 -116955615 - PB1D7 SINE Alu 0 120 10 6 617 257 302 0 109 chr12 4301816 4301935 -116955595 - MT2B2 LTR ERVL -324 260 155 6 617 255 61 0 0 chr12 4302201 4302234 -116955296 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 617 444 318 70 0 chr12 4302835 4302964 -116954566 + ID_B1 SINE B4 82 219 -5 6 617 275 286 0 0 chr12 4302964 4303020 -116954510 + ID SINE ID 19 74 -150 6 617 1063 225 128 89 chr12 4303372 4303597 -116953933 - L1MA8 LINE L1 -14 6277 6047 6 617 1359 78 5 45 chr12 4303597 4303797 -116953733 + B2_Mm1t SINE B2 2 193 0 6 617 1063 225 128 89 chr12 4303797 4304066 -116953464 - L1MA8 LINE L1 -245 6046 5763 6 617 321 26 0 0 chr12 4304066 4304104 -116953426 + (CATA)n Simple_repeat Simple_repeat 2 39 0 6 617 1063 225 128 89 chr12 4304104 4304316 -116953214 - L1MA8 LINE L1 -529 5762 5542 6 617 304 40 40 0 chr12 4305362 4305412 -116952118 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 617 231 114 0 0 chr12 4306134 4306169 -116951361 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 6 617 312 94 0 0 chr12 4306355 4306408 -116951122 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 6 617 695 230 80 20 chr12 4306831 4307031 -116950499 + ID_B1 SINE B4 3 214 -10 6 617 6834 145 84 4 chr12 4308633 4310458 -116947072 + L1_Mus3 LINE L1 4638 6613 -25 6 617 217 75 50 0 chr12 4310499 4310539 -116946991 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 6 617 1126 224 0 0 chr12 4310659 4310869 -116946661 - B3 SINE B2 -6 210 1 6 617 383 273 19 74 chr12 4311081 4311243 -116946287 - RSINE1 SINE B4 0 165 13 6 617 419 227 15 173 chr12 4312272 4312405 -116945125 - PB1 SINE Alu -3 124 9 6 617 505 238 20 0 chr12 4312583 4312684 -116944846 - RSINE1 SINE B4 -61 104 2 6 617 823 241 52 0 chr12 4313513 4313704 -116943826 - B3 SINE B2 -13 203 3 6 617 2527 138 22 7 chr12 4313707 4314122 -116943408 + MTC LTR MaLR 1 421 0 6 617 445 260 31 23 chr12 4314442 4314572 -116942958 - B1F SINE Alu -15 134 4 6 617 505 261 21 21 chr12 4315238 4315379 -116942151 + B1F SINE Alu 1 141 -8 6 617 699 209 0 81 chr12 4315389 4315550 -116941980 + B1F2 SINE Alu 2 149 0 6 617 4017 60 28 0 chr12 4315989 4316493 -116941037 + L1_Mus1 LINE L1 6050 6567 0 6 617 22 0 0 0 chr12 4316493 4316515 -116941015 + AT_rich Low_complexity Low_complexity 1 22 0 7 617 29 28 0 0 chr12 4317613 4317649 -116939881 + AT_rich Low_complexity Low_complexity 1 36 0 7 617 310 189 0 26 chr12 4318020 4318096 -116939434 - Lx8 LINE L1 -3 7470 7397 7 617 339 25 0 0 chr12 4318106 4318146 -116939384 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 617 962 226 36 0 chr12 4318209 4318404 -116939126 - B3 SINE B2 -14 202 1 7 617 848 281 12 12 chr12 4318425 4318666 -116938864 - Lx8 LINE L1 -162 7311 7071 7 617 1712 292 34 11 chr12 4318707 4319274 -116938256 + Lx8 LINE L1 6435 7014 -459 7 617 268 235 0 190 chr12 4319890 4319990 -116937540 - ID2 SINE ID -1 82 2 7 617 322 246 72 43 chr12 4320340 4320464 -116937066 - MIRb SINE MIR -85 123 2 7 617 796 292 115 0 chr12 4320617 4320877 -116936653 - B4A SINE B4 0 292 3 7 617 206 429 64 7 chr12 4322329 4322470 -116935060 - MER91A DNA Tip100 -1 195 47 7 617 652 281 52 33 chr12 4323282 4323492 -116934038 - B3A SINE B2 0 216 3 7 77 5985 69 102 5 chr12 4324212 4325822 -116931708 + L1VL4 LINE L1 208 1971 -1588 7 618 3440 125 31 55 chr12 4325821 4326036 -116931494 + Lx2 LINE L1 5237 5460 -423 7 618 1279 93 50 0 chr12 4326036 4326218 -116931312 + B2_Mm2 SINE B2 2 192 -3 7 618 6091 110 45 31 chr12 4326218 4327412 -116930118 + Lx2 LINE L1 5461 6645 -352 7 618 1259 116 0 0 chr12 4327420 4327609 -116929921 + Lx2 LINE L1 6803 6991 -6 7 618 1145 231 87 21 chr12 4327630 4328011 -116929519 + Lx9 LINE L1 5257 5662 -185 7 618 7224 70 31 20 chr12 4328018 4329223 -116928307 - L1_Mus2 LINE L1 -611 5955 4731 7 618 4699 48 8 18 chr12 4329223 4329841 -116927689 + L1_Mus2 LINE L1 5955 6566 0 7 618 4656 143 62 21 chr12 4329846 4330731 -116926799 + Lx3C LINE L1 6054 6974 -2 7 618 1084 302 150 44 chr12 4330741 4330794 -116926736 + Lx9 LINE L1 5694 5746 -1727 7 618 300 111 0 0 chr12 4330794 4330839 -116926691 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 618 1533 256 195 45 chr12 4330839 4331892 -116925638 + Lx9 LINE L1 5747 7042 -602 7 618 672 271 45 45 chr12 4331991 4332281 -116925249 - L1MA8 LINE L1 -266 6025 5736 7 618 815 249 63 56 chr12 4332298 4332617 -116924913 + L1M2 LINE L1 5451 5771 -520 7 618 21 36 0 0 chr12 4333014 4333042 -116924488 + AT_rich Low_complexity Low_complexity 1 28 0 7 618 2573 177 78 55 chr12 4333804 4334421 -116923109 + Lx5 LINE L1 6417 7047 -3 7 618 4124 43 0 0 chr12 4335993 4336485 -116921045 + L1Md_F2 LINE L1 6091 6582 0 7 618 272 361 114 40 chr12 4336594 4336796 -116920734 + MLT1J LTR MaLR 156 372 -140 7 618 38 0 0 0 chr12 4336974 4337012 -116920518 + AT_rich Low_complexity Low_complexity 1 38 0 7 618 634 228 29 14 chr12 4337089 4337227 -116920303 + B1_Mur1 SINE Alu 2 141 -8 7 618 704 167 32 115 chr12 4337443 4337599 -116919931 - B1_Mus1 SINE Alu -5 143 1 7 618 305 311 47 0 chr12 4340671 4340777 -116916753 - PB1D9 SINE Alu -8 112 2 7 618 827 268 82 4 chr12 4341199 4341443 -116916087 - MER2 DNA MER2_type -30 315 53 7 618 272 270 98 58 chr12 4341858 4342031 -116915499 + MIR SINE MIR 71 250 -12 7 618 211 373 34 68 chr12 4342120 4342238 -116915292 + MIRm SINE MIR 160 273 -3 7 618 393 296 0 9 chr12 4342878 4342994 -116914536 + PB1D7 SINE Alu 5 119 -1 7 618 545 301 79 11 chr12 4343467 4343645 -116913885 + MER20 DNA MER1_type 30 219 0 7 618 29 0 0 0 chr12 4343810 4343839 -116913691 + AT_rich Low_complexity Low_complexity 1 29 0 7 618 190 325 12 59 chr12 4343934 4344019 -116913511 - L2b LINE L2 -50 3325 3245 7 618 221 286 54 0 chr12 4345672 4345728 -116911802 - B1F1 SINE Alu -43 106 48 7 618 1207 113 0 36 chr12 4345767 4345960 -116911570 - B2_Mm2 SINE B2 -9 186 1 7 618 342 0 0 0 chr12 4346800 4346838 -116910692 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 618 390 245 10 60 chr12 4346864 4346964 -116910566 - PB1D9 SINE Alu -3 117 23 7 618 184 341 79 58 chr12 4347211 4347401 -116910129 - L2a LINE L2 -55 3371 3178 7 618 381 181 36 0 chr12 4347650 4347733 -116909797 + 5S rRNA rRNA 5 90 -31 7 618 692 307 78 5 chr12 4348871 4349271 -116908259 - L1M4 LINE L1 -352 5819 5372 7 618 25496 88 4 9 chr12 4349442 4354011 -116903519 - L1_Mus1 LINE L1 -3 6564 2019 7 618 357 246 62 5 chr12 4354983 4355115 -116902415 + L1MEb LINE L1 37 174 -5896 7 618 1257 301 86 7 chr12 4355319 4355751 -116901779 + RCHARR1 DNA MER1_type 46 511 -463 7 618 488 291 13 90 chr12 4355766 4355843 -116901687 - B3 SINE B2 0 216 145 7 618 342 0 0 0 chr12 4355843 4355881 -116901649 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 618 570 269 7 65 chr12 4355881 4356037 -116901493 - B3A SINE B2 -52 146 1 7 618 1194 192 11 11 chr12 4356039 4356282 -116901248 + RCHARR1 DNA MER1_type 520 747 -227 7 618 588 282 197 30 chr12 4356466 4356766 -116900764 + RMER21A LTR ERV1 340 689 -258 7 618 3061 201 78 29 chr12 4356796 4357413 -116900117 + RodERV21-int LTR ERV1 7 665 -4326 7 618 2740 58 237 10 chr12 4357413 4357830 -116899700 + RLTR1B LTR ERV1 1 512 0 7 618 3061 201 78 29 chr12 4357830 4358038 -116899492 + RodERV21-int LTR ERV1 666 872 -4119 7 618 1778 80 0 38 chr12 4358038 4358273 -116899257 - MTB LTR MaLR 0 400 176 7 618 2475 108 41 28 chr12 4358273 4358665 -116898865 + RLTR13D6 LTR ERVK 1 397 -505 7 618 2587 99 15 32 chr12 4358670 4359077 -116898453 + RLTR13D6 LTR ERVK 219 618 -284 7 618 369 171 26 26 chr12 4359057 4359135 -116898395 + RLTR13D6 LTR ERVK 731 808 0 7 618 1376 66 6 0 chr12 4359135 4359309 -116898221 - MTB LTR MaLR -225 175 1 7 618 572 120 78 69 chr12 4359309 4359425 -116898105 + RodERV21-int LTR ERV1 868 984 -4007 7 618 776 249 72 0 chr12 4359705 4359914 -116897616 + RLTR42-int LTR ERVK 1110 1333 -4189 7 618 284 184 39 26 chr12 4360016 4360094 -116897436 + RLTR19-int LTR ERVK 899 977 -5160 7 618 278 271 121 61 chr12 4360111 4360276 -116897254 + RLTR19-int LTR ERVK 1621 1795 -3727 7 618 6183 191 55 24 chr12 4360293 4361603 -116895927 + RodERV21-int LTR ERV1 1003 2353 -2638 7 618 272 131 79 32 chr12 4361611 4361674 -116895856 + RodERV21-int LTR ERV1 2645 2710 -2281 7 618 280 200 0 32 chr12 4362046 4362108 -116895422 + RLTR19-int LTR ERVK 1101 1160 -4977 7 618 487 293 15 45 chr12 4363046 4363246 -116894284 + RodERV21-int LTR ERV1 3275 3468 -1523 7 618 5267 165 28 61 chr12 4363259 4363696 -116893834 + RodERV21-int LTR ERV1 3769 4175 -816 7 618 1247 35 0 0 chr12 4363696 4363841 -116893689 - B1_Mus2 SINE Alu -2 145 1 7 618 5267 165 28 61 chr12 4363841 4364497 -116893033 + RodERV21-int LTR ERV1 4176 4826 -165 7 618 497 245 0 19 chr12 4364497 4364601 -116892929 + RMER4B LTR ERVK 345 446 -139 7 618 1177 62 0 0 chr12 4365174 4365320 -116892210 + B1_Mm SINE Alu 2 147 0 7 618 203 0 37 0 chr12 4365322 4365349 -116892181 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 7 618 195 69 0 0 chr12 4365349 4365378 -116892152 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 618 1063 101 7 7 chr12 4365385 4365534 -116891996 + B1_Mur4 SINE Alu 1 149 -1 7 618 1148 235 74 44 chr12 4365991 4366330 -116891200 + ORR1E LTR MaLR 1 349 -10 7 618 23 33 0 0 chr12 4366691 4366721 -116890809 + AT_rich Low_complexity Low_complexity 1 30 0 7 618 1048 92 25 0 chr12 4366965 4367128 -116890402 - L1_Mus3 LINE L1 -6 6632 6466 7 618 303 259 82 18 chr12 4367313 4367423 -116890107 + L1M5 LINE L1 5665 5781 -459 7 618 561 307 120 60 chr12 4367846 4368037 -116889493 - B4A SINE B4 -9 283 82 7 618 959 40 24 0 chr12 4368037 4368163 -116889367 + (TTTTC)n Simple_repeat Simple_repeat 1 129 0 7 618 561 307 120 60 chr12 4368163 4368238 -116889292 - B4A SINE B4 -211 81 1 7 618 1066 60 8 0 chr12 4368417 4368550 -116888980 - B1_Mm SINE Alu -13 134 1 7 618 21 0 0 0 chr12 4368550 4368571 -116888959 + AT_rich Low_complexity Low_complexity 1 21 0 7 618 388 250 161 0 chr12 4368861 4368973 -116888557 - RSINE1 SINE B4 -12 153 24 7 618 28 0 0 0 chr12 4368988 4369016 -116888514 + AT_rich Low_complexity Low_complexity 1 28 0 7 618 325 180 9 160 chr12 4369775 4369881 -116887649 + MT2B LTR ERVL 168 257 -344 7 618 843 174 0 14 chr12 4369788 4369928 -116887602 + B1_Mur1 SINE Alu 12 149 0 7 618 1695 16 0 0 chr12 4370464 4370653 -116886877 - B2_Mm1a SINE B2 -3 190 2 7 618 24 32 0 0 chr12 4370662 4370693 -116886837 + AT_rich Low_complexity Low_complexity 1 31 0 7 618 276 321 36 0 chr12 4370726 4370810 -116886720 - L2a LINE L2 -5 3421 3335 7 618 815 290 14 0 chr12 4371084 4371298 -116886232 + ID_B1 SINE B4 1 217 -7 7 618 210 37 0 0 chr12 4371304 4371331 -116886199 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 7 618 586 94 23 167 chr12 4371467 4371615 -116885915 - ORR1A3 LTR MaLR -8 411 230 7 618 303 298 199 40 chr12 4371692 4371993 -116885537 + L1M5 LINE L1 2690 3038 -3108 7 618 1961 75 15 0 chr12 4372053 4372320 -116885210 - L1Md_F2 LINE L1 -1 6581 6311 7 618 288 0 0 0 chr12 4372701 4372733 -116884797 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 618 258 301 118 22 chr12 4372776 4372912 -116884618 + MER58B DNA MER1_type 192 340 -1 7 618 522 240 220 11 chr12 4373719 4373896 -116883634 + B3 SINE B2 2 215 -1 7 618 183 129 0 0 chr12 4374051 4374082 -116883448 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 618 610 262 42 26 chr12 4374117 4374298 -116883232 + B3A SINE B2 2 193 0 7 618 2241 64 0 0 chr12 4375476 4375759 -116881771 + L1_Mus1 LINE L1 6285 6567 0 7 618 699 177 184 47 chr12 4376321 4376511 -116881019 + B3 SINE B2 1 216 0 7 618 945 199 141 4 chr12 4377814 4378041 -116879489 + MTD LTR MaLR 146 403 -16 7 618 441 279 163 0 chr12 4378129 4378301 -116879229 - MIR SINE MIR -46 216 17 7 618 433 290 76 8 chr12 4378529 4378553 -116878977 - ID_B1 SINE B4 0 224 84 7 618 651 139 83 0 chr12 4378553 4378661 -116878869 - B1_Mus1 SINE Alu -29 119 3 7 618 263 211 75 133 chr12 4378559 4378679 -116878851 - MT2B LTR ERVL -337 264 152 7 618 225 206 80 62 chr12 4379751 4379927 -116877603 + RMER17C LTR ERVK 97 275 -135 7 618 270 37 93 0 chr12 4379929 4379983 -116877547 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 7 618 511 147 176 0 chr12 4380303 4380405 -116877125 + PB1D9 SINE Alu 1 120 0 7 618 189 0 0 0 chr12 4380409 4380430 -116877100 + (TAA)n Simple_repeat Simple_repeat 2 22 0 7 618 1194 61 0 0 chr12 4380594 4380742 -116876788 - B1_Mus1 SINE Alu 0 148 1 7 618 253 229 42 28 chr12 4381178 4381250 -116876280 - ID2 SINE ID -10 73 1 8 618 340 307 35 9 chr12 4382138 4382253 -116875277 - PB1D9 SINE Alu -2 118 1 8 618 182 237 0 0 chr12 4383339 4383377 -116874153 + L4 LINE RTE 1101 1138 -891 8 618 223 271 0 28 chr12 4384075 4384147 -116873383 + MIR3 SINE MIR 108 177 -31 8 618 2002 80 11 0 chr12 4384261 4384547 -116872983 + Lx3A LINE L1 6173 6461 -520 8 618 279 79 0 0 chr12 4384591 4384629 -116872901 + (TAAG)n Simple_repeat Simple_repeat 2 39 0 8 618 338 288 43 43 chr12 4384699 4384815 -116872715 + MTEa LTR MaLR 1 116 -263 8 618 246 303 68 27 chr12 4384953 4385099 -116872431 + MTEa LTR MaLR 218 369 -5 8 618 1504 133 0 0 chr12 4385157 4385382 -116872148 + URR1B DNA MER1_type 1 225 0 8 618 611 299 66 20 chr12 4385403 4385601 -116871929 - MER58A DNA MER1_type -17 207 1 8 618 481 272 55 6 chr12 4386775 4386956 -116870574 + Lx7 LINE L1 7174 7363 -333 8 618 1946 9 0 0 chr12 4386994 4387217 -116870313 - L1Md_A LINE L1 0 6582 6360 8 618 278 134 15 0 chr12 4387401 4387468 -116870062 + (TC)n Simple_repeat Simple_repeat 2 69 0 8 618 243 0 0 0 chr12 4388424 4388451 -116869079 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 618 23 33 0 0 chr12 4388583 4388613 -116868917 + AT_rich Low_complexity Low_complexity 1 30 0 8 618 215 302 0 0 chr12 4388642 4388695 -116868835 + ID4 SINE ID 21 73 -10 8 618 192 40 0 0 chr12 4388695 4388720 -116868810 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 618 573 280 137 20 chr12 4388764 4389019 -116868511 + L1MDa LINE L1 18 288 -6345 8 618 288 0 0 0 chr12 4389019 4389051 -116868479 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 618 573 280 137 20 chr12 4389051 4389138 -116868392 + L1MDa LINE L1 289 399 -6234 8 618 412 311 62 78 chr12 4389333 4389622 -116867908 + L1MDa LINE L1 726 1006 -5627 8 618 345 318 0 26 chr12 4389622 4389735 -116867795 - PB1D10 SINE Alu -7 110 1 8 618 412 311 62 78 chr12 4389735 4389829 -116867701 + L1MDa LINE L1 1007 1103 -5530 8 618 697 229 81 16 chr12 4389829 4390015 -116867515 - B3A SINE B2 0 198 1 8 618 255 295 127 53 chr12 4390015 4390370 -116867160 + L1MDa LINE L1 1092 1472 -5161 8 618 453 284 166 43 chr12 4390464 4390699 -116866831 + B4 SINE B4 6 269 -23 8 618 288 0 0 0 chr12 4390699 4390731 -116866799 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 618 342 333 0 23 chr12 4391145 4391277 -116866253 - L1MEg LINE L1 -5636 448 320 8 618 813 197 16 17 chr12 4391313 4391503 -116866027 + MTD LTR MaLR 1 188 -231 8 618 256 225 8 104 chr12 4391944 4392078 -116865452 + L1MC5 LINE L1 7657 7777 -184 8 618 622 221 189 21 chr12 4392233 4392423 -116865107 + ID_B1 SINE B4 3 224 0 8 618 353 256 70 0 chr12 4392592 4392678 -116864852 + PB1D7 SINE Alu 1 92 -28 8 618 240 258 63 63 chr12 4392595 4392690 -116864840 + MT2B2 LTR ERVL 168 262 -322 8 618 725 236 81 67 chr12 4392710 4392919 -116864611 + B3 SINE B2 1 212 -4 8 618 499 281 62 56 chr12 4392958 4393120 -116864410 + RSINE1 SINE B4 2 164 -1 8 618 400 332 115 49 chr12 4393348 4393757 -116863773 - L1ME1 LINE L1 -34 6145 5710 8 618 1107 176 76 13 chr12 4394481 4394705 -116862825 + 7SK RNA RNA 1 238 -93 8 618 739 291 91 5 chr12 4394700 4394897 -116862633 - B4A SINE B4 -51 241 28 8 618 1203 48 0 0 chr12 4394901 4395046 -116862484 + B1_Mus2 SINE Alu 2 146 -1 8 618 705 275 69 12 chr12 4395097 4395443 -116862087 - L1MD LINE L1 -815 5331 4966 8 618 186 43 0 0 chr12 4395980 4396003 -116861527 + (CAG)n Simple_repeat Simple_repeat 2 24 0 8 618 393 250 143 21 chr12 4396028 4396319 -116861211 + L1MEf LINE L1 1241 1572 -5061 8 618 4971 64 11 0 chr12 4396667 4397296 -116860234 + L1_Mus1 LINE L1 5932 6567 0 8 618 219 269 30 0 chr12 4397343 4397410 -116860120 + L2a LINE L2 3267 3335 -91 8 618 309 89 0 0 chr12 4397816 4397861 -116859669 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 618 262 82 0 58 chr12 4397905 4397957 -116859573 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 8 618 216 0 0 0 chr12 4397957 4397981 -116859549 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 618 717 283 94 43 chr12 4398028 4398283 -116859247 - B4A SINE B4 -23 269 2 8 618 23 0 0 0 chr12 4398858 4398881 -116858649 + AT_rich Low_complexity Low_complexity 1 23 0 8 618 206 80 80 0 chr12 4398903 4398953 -116858577 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 618 1127 68 0 7 chr12 4398960 4399107 -116858423 - B1_Mus1 SINE Alu -1 147 2 8 618 264 316 56 40 chr12 4399385 4399583 -116857947 - L1M5 LINE L1 -357 5767 5567 8 618 1065 311 55 5 chr12 4400234 4400615 -116856915 + Kanga11a DNA Tc2 193 592 -378 8 618 440 111 0 14 chr12 4400615 4400688 -116856842 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 8 618 237 65 0 0 chr12 4400690 4400721 -116856809 + L1Md_F2 LINE L1 5556 5586 -297 8 618 7617 47 31 13 chr12 4400721 4401700 -116855830 + L1Md_F2 LINE L1 5587 6582 0 8 618 268 318 0 0 chr12 4401700 4401766 -116855764 + B4A SINE B4 223 288 -4 8 618 234 268 2 63 chr12 4401719 4401808 -116855722 + B3A SINE B2 112 196 -20 8 618 233 262 202 10 chr12 4402151 4402255 -116855275 + ID_B1 SINE B4 101 224 0 8 618 690 47 0 0 chr12 4402504 4402590 -116854940 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 8 618 383 206 166 51 chr12 4403347 4403519 -116854011 + B3 SINE B2 1 216 0 8 618 886 168 7 7 chr12 4403657 4403807 -116853723 + B1_Mur4 SINE Alu 1 150 0 8 618 1087 282 17 66 chr12 4403826 4404114 -116853416 + B4A SINE B4 12 285 -7 8 618 324 0 0 0 chr12 4404123 4404159 -116853371 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 618 519 17 0 0 chr12 4404159 4404218 -116853312 + (GA)n Simple_repeat Simple_repeat 2 61 0 8 618 468 232 48 20 chr12 4404218 4404338 -116853192 + B1F SINE Alu 3 134 -15 8 618 597 299 34 0 chr12 4404379 4404526 -116853004 - RSINE1 SINE B4 -10 155 4 8 618 198 0 0 0 chr12 4404539 4404561 -116852969 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 8 618 21 0 0 0 chr12 4404575 4404596 -116852934 + AT_rich Low_complexity Low_complexity 1 21 0 8 618 244 333 29 0 chr12 4404626 4404695 -116852835 - ID4_ SINE ID -4 79 9 8 618 251 286 16 0 chr12 4404771 4404834 -116852696 + ID4 SINE ID 2 65 -18 8 618 307 227 125 0 chr12 4405399 4405487 -116852043 + PB1 SINE Alu 17 115 -12 8 618 1642 31 0 0 chr12 4405926 4406118 -116851412 + B2_Mm1a SINE B2 1 192 -1 8 618 265 303 40 0 chr12 4407316 4407392 -116850138 + MIR SINE MIR 163 241 -21 8 618 322 252 53 15 chr12 4407696 4407829 -116849701 - L1MC5 LINE L1 -221 7740 7603 8 618 307 284 149 37 chr12 4407957 4408198 -116849332 - L1MC5 LINE L1 -573 7388 7121 8 618 241 286 226 36 chr12 4408525 4408746 -116848784 - Charlie25 DNA MER1_type -262 2262 2000 8 618 230 255 62 18 chr12 4408910 4409022 -116848508 - L1_Rod LINE L1 -1190 4657 4541 8 618 1264 118 5 11 chr12 4409042 4409230 -116848300 - B2_Mm2 SINE B2 -7 188 2 8 618 32 43 0 0 chr12 4409237 4409283 -116848247 + AT_rich Low_complexity Low_complexity 1 46 0 8 618 299 258 0 0 chr12 4409283 4409370 -116848160 - L1M3 LINE L1 -1586 4554 4445 8 618 564 156 138 0 chr12 4409429 4409538 -116847992 - B1_Mus2 SINE Alu -21 126 3 8 618 293 250 75 57 chr12 4409453 4409559 -116847971 - MT2B LTR ERVL -344 257 150 8 618 504 304 56 48 chr12 4409574 4409938 -116847592 - L1M3 LINE L1 -1907 4233 3832 8 618 1168 68 0 0 chr12 4409938 4410085 -116847445 - B1_Mus2 SINE Alu 0 147 1 8 618 1147 115 33 0 chr12 4410086 4410269 -116847261 - L1Md_F2 LINE L1 0 6582 6394 8 618 436 304 63 57 chr12 4410269 4410365 -116847165 - L1M3 LINE L1 -2277 3866 3772 8 618 532 146 229 0 chr12 4410377 4410521 -116847009 - Lx2B LINE L1 0 7000 6824 8 618 336 300 81 23 chr12 4410533 4410707 -116846823 - L1M3 LINE L1 -2194 3683 3500 8 618 357 257 16 59 chr12 4410747 4410933 -116846597 - L1M3 LINE L1 -2474 3406 3229 8 618 2422 52 21 0 chr12 4410959 4411284 -116846246 - L1_Mus3 LINE L1 -21 6617 6286 8 618 5115 80 6 50 chr12 4411288 4411937 -116845593 + MusHAL1 LINE L1 1626 2278 -434 8 618 2103 129 28 14 chr12 4411937 4412290 -116845240 + Lx3A LINE L1 6624 6981 0 8 618 5115 80 6 50 chr12 4412290 4412483 -116845047 + MusHAL1 LINE L1 2279 2431 -281 8 618 402 256 102 18 chr12 4412483 4412650 -116844880 - L1M2 LINE L1 -2950 3193 3013 8 618 237 159 0 0 chr12 4412653 4412697 -116844833 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 618 293 292 22 22 chr12 4412698 4412789 -116844741 - B4A SINE B4 -1 291 201 8 618 351 292 141 37 chr12 4412829 4412964 -116844566 - B4A SINE B4 0 292 144 8 618 401 268 0 0 chr12 4412969 4413051 -116844479 - B4A SINE B4 -89 203 122 8 618 293 252 10 10 chr12 4413051 4413151 -116844379 - L1M2 LINE L1 -3133 3010 2911 8 618 275 316 30 10 chr12 4413182 4413281 -116844249 - Charlie25 DNA MER1_type -663 1861 1761 8 618 623 321 132 44 chr12 4413383 4414151 -116843379 - Charlie25 DNA MER1_type -911 1613 778 8 618 180 0 0 0 chr12 4414261 4414281 -116843249 + (CACAG)n Simple_repeat Simple_repeat 1 20 0 8 618 1045 89 13 27 chr12 4415399 4415549 -116841981 - B1_Mus1 SINE Alu 0 148 1 8 618 320 273 39 13 chr12 4416118 4416196 -116841334 - PB1D7 SINE Alu -23 97 18 8 618 1237 115 16 0 chr12 4416401 4416584 -116840946 + B2_Mm2 SINE B2 1 186 -9 8 618 231 152 45 119 chr12 4417358 4417425 -116840105 - ID SINE ID -160 64 3 8 618 3386 191 52 20 chr12 4417678 4418528 -116839002 + L1MA6 LINE L1 5361 6237 -63 8 618 674 312 17 11 chr12 4418543 4418718 -116838812 + B4 SINE B4 113 288 -4 8 618 552 306 44 125 chr12 4418890 4419185 -116838345 + B4A SINE B4 1 271 -21 8 618 333 0 0 0 chr12 4419231 4419268 -116838262 + (CATA)n Simple_repeat Simple_repeat 2 38 0 8 618 1119 68 0 27 chr12 4419582 4419732 -116837798 + B1_Mus2 SINE Alu 2 147 0 8 618 1281 278 50 15 chr12 4419847 4420190 -116837340 + ORR1E LTR MaLR 5 359 0 8 618 3697 277 58 64 chr12 4420190 4421534 -116835996 + ORR1E-int LTR MaLR 17 1352 -18 8 618 624 277 11 43 chr12 4421536 4421721 -116835809 + MTE2b LTR MaLR 201 379 0 8 618 513 61 0 35 chr12 4421812 4421897 -116835633 + (TC)n Simple_repeat Simple_repeat 1 82 0 8 618 285 303 15 22 chr12 4422037 4422172 -116835358 + L1MCc LINE L1 224 357 -6066 8 618 278 210 31 46 chr12 4422198 4422263 -116835267 + B4A SINE B4 188 251 -41 9 618 624 129 0 0 chr12 4422297 4422398 -116835132 + (GA)n Simple_repeat Simple_repeat 2 102 0 9 618 192 97 0 0 chr12 4422491 4422522 -116835008 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 618 385 323 88 53 chr12 4422648 4423130 -116834400 + L1MCc LINE L1 668 1180 -5243 8 618 248 276 13 13 chr12 4423338 4423415 -116834115 + (TG)n Simple_repeat Simple_repeat 2 78 0 9 618 716 347 11 32 chr12 4423434 4423717 -116833813 - B4A SINE B4 -14 278 2 9 618 598 208 58 0 chr12 4423929 4424049 -116833481 - B1_Mur2 SINE Alu 0 149 23 9 618 458 250 60 8 chr12 4424679 4424796 -116832734 + MER44D DNA MER2_type 19 141 -564 9 618 549 250 23 0 chr12 4424830 4424958 -116832572 + MER44D DNA MER2_type 325 455 -250 9 618 733 206 7 14 chr12 4425267 4425405 -116832125 - B1_Mur2 SINE Alu 0 149 13 9 618 21 0 0 0 chr12 4425587 4425608 -116831922 + AT_rich Low_complexity Low_complexity 1 21 0 9 618 1043 90 7 7 chr12 4425630 4425775 -116831755 + B1_Mus1 SINE Alu 2 146 -2 9 618 288 0 0 0 chr12 4425776 4425808 -116831722 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 9 618 474 296 22 0 chr12 4425810 4425945 -116831585 - B1F SINE Alu -11 138 1 9 618 21 82 0 0 chr12 4425973 4426022 -116831508 + AT_rich Low_complexity Low_complexity 1 49 0 9 618 306 301 118 88 chr12 4426131 4426589 -116830941 + MLT1H1 LTR MaLR 15 489 0 9 618 23 0 0 0 chr12 4427032 4427055 -116830475 + AT_rich Low_complexity Low_complexity 1 23 0 9 618 340 274 58 23 chr12 4427326 4427498 -116830032 - L1MD3 LINE L1 -939 7056 6879 9 618 456 161 0 0 chr12 4427557 4427638 -116829892 + CT-rich Low_complexity Low_complexity 3 83 0 9 618 647 75 67 7 chr12 4427642 4427777 -116829753 + (TTTCC)n Simple_repeat Simple_repeat 2 144 0 9 618 183 205 0 0 chr12 4427768 4427807 -116829723 + CT-rich Low_complexity Low_complexity 3 41 0 9 618 262 292 179 4 chr12 4427812 4428063 -116829467 - L1MD3 LINE L1 -1045 6740 6446 9 618 1160 196 179 6 chr12 4428229 4428548 -116828982 + ORR1D1 LTR MaLR 1 374 0 9 618 330 346 44 61 chr12 4428863 4429091 -116828439 + L2 LINE L2 2714 2937 -482 9 618 317 346 116 85 chr12 4430224 4430717 -116826813 - MLT1J LTR MaLR -4 508 1 9 618 1081 0 65 0 chr12 4430805 4430974 -116826556 + (CAGG)n Simple_repeat Simple_repeat 1 180 0 9 618 1260 3 48 0 chr12 4430985 4431361 -116826169 + (CAGG)n Simple_repeat Simple_repeat 1 394 0 9 618 289 212 362 41 chr12 4431459 4431583 -116825947 - B1_Mur2 SINE Alu -13 136 8 9 618 267 265 134 89 chr12 4431597 4431709 -116825821 - PB1D10 SINE Alu 0 117 1 9 618 1245 34 0 0 chr12 4431901 4432048 -116825482 + B1_Mus2 SINE Alu 1 147 0 9 618 479 236 57 0 chr12 4433105 4433211 -116824319 - B3 SINE B2 -103 113 2 9 618 337 286 227 0 chr12 4434096 4434215 -116823315 + B1_Mur2 SINE Alu 1 146 -3 9 618 577 299 86 24 chr12 4434898 4435363 -116822167 + L1M2c LINE L1 1446 1920 -4929 9 618 493 182 68 65 chr12 4435643 4435794 -116821736 - B3 SINE B2 -6 187 42 9 618 594 262 102 9 chr12 4435849 4436172 -116821358 + L1M2 LINE L1 2113 2432 -4417 9 618 303 174 157 14 chr12 4436317 4436387 -116821143 + L1M2 LINE L1 3611 3690 -3155 9 618 713 245 42 41 chr12 4436557 4436954 -116820576 + L1M2 LINE L1 3676 4066 -2776 9 618 319 243 227 13 chr12 4439066 4439216 -116818314 + L1M2 LINE L1 4458 4639 -2206 9 618 264 30 0 0 chr12 4439245 4439278 -116818252 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 618 356 92 31 0 chr12 4439275 4439340 -116818190 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 9 618 631 210 32 0 chr12 4439382 4439506 -116818024 + B4A SINE B4 159 286 -6 9 618 1216 50 6 30 chr12 4439586 4439750 -116817780 + B2_Mm2 SINE B2 3 162 -33 9 618 252 0 0 0 chr12 4439750 4439778 -116817752 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 9 618 214 351 39 0 chr12 4440488 4440565 -116816965 + ID2 SINE ID 2 81 -2 9 618 6376 161 70 17 chr12 4440585 4442076 -116815454 + Lx5 LINE L1 5435 7026 -24 9 618 234 0 0 0 chr12 4442082 4442108 -116815422 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 9 618 207 69 0 0 chr12 4442248 4442277 -116815253 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 9 618 3011 108 106 2 chr12 4442623 4443095 -116814435 + Lx LINE L1 6134 6654 0 9 618 297 0 0 0 chr12 4443142 4443175 -116814355 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 9 618 1025 122 7 0 chr12 4443245 4443393 -116814137 - B1_Mur4 SINE Alu -1 149 1 9 618 38 61 0 0 chr12 4443548 4443614 -116813916 + AT_rich Low_complexity Low_complexity 1 66 0 9 618 23 0 0 0 chr12 4444322 4444345 -116813185 + AT_rich Low_complexity Low_complexity 1 23 0 9 618 454 248 38 102 chr12 4444452 4444609 -116812921 + B4 SINE B4 77 223 -69 9 618 907 109 7 0 chr12 4444473 4444611 -116812919 + B1_Mus2 SINE Alu 9 147 0 9 618 249 227 79 11 chr12 4444686 4444775 -116812755 + L1M3 LINE L1 5166 5260 -880 9 618 637 263 93 32 chr12 4444916 4445132 -116812398 + Lx8 LINE L1 7245 7473 0 9 618 253 230 57 11 chr12 4445140 4445228 -116812302 + L1M3 LINE L1 5269 5360 -940 9 618 1765 142 7 42 chr12 4445251 4445560 -116811970 + Lx3C LINE L1 6679 6976 0 9 618 705 126 0 0 chr12 4445561 4445672 -116811858 + (GGA)n Simple_repeat Simple_repeat 2 112 0 9 618 274 267 104 46 chr12 4445984 4446157 -116811373 + Tigger7 DNA MER2_type 2309 2491 0 9 618 246 319 32 32 chr12 4446157 4446251 -116811279 + L1M3 LINE L1 5612 5705 -607 9 618 796 258 58 11 chr12 4446280 4446552 -116810978 + L1MB1 LINE L1 5661 5939 -373 9 618 250 299 3 0 chr12 4447497 4447593 -116809937 - Tigger16b DNA Tigger -51 286 190 9 618 824 179 130 5 chr12 4448042 4448219 -116809311 + B3 SINE B2 1 200 -16 9 618 260 0 57 0 chr12 4448219 4448254 -116809276 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 9 618 820 48 0 0 chr12 4448300 4448405 -116809125 + B2_Mm2 SINE B2 3 107 -88 9 618 1295 71 47 6 chr12 4448794 4448965 -116808565 - B2_Mm2 SINE B2 -16 179 2 9 618 534 319 95 42 chr12 4449206 4449638 -116807892 - L1MA5A LINE L1 -367 5930 5476 9 618 961 95 0 0 chr12 4450338 4450475 -116807055 - B1_Mus1 SINE Alu 0 148 12 9 618 274 173 57 80 chr12 4450396 4450484 -116807046 - 4.5SRNA scRNA scRNA -8 86 1 9 618 1069 263 179 10 chr12 4450564 4451134 -116806396 + L1MB7 LINE L1 5045 5720 -464 9 618 924 151 0 6 chr12 4451398 4451733 -116805797 + CT-rich Low_complexity Low_complexity 1 332 0 9 618 216 0 0 0 chr12 4451733 4451757 -116805773 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 618 1253 63 98 0 chr12 4451965 4452139 -116805391 + B2_Mm1a SINE B2 1 191 -2 9 618 1083 216 5 0 chr12 4452358 4452566 -116804964 + B3 SINE B2 2 210 -6 9 618 23 0 0 0 chr12 4452566 4452589 -116804941 + AT_rich Low_complexity Low_complexity 1 23 0 9 618 538 312 128 15 chr12 4452603 4452932 -116804598 + L1MB7 LINE L1 5803 6168 -16 9 618 419 174 217 0 chr12 4452943 4453035 -116804495 + PB1D9 SINE Alu 3 114 -6 9 618 1136 179 43 0 chr12 4453067 4453274 -116804256 + B3 SINE B2 1 216 0 9 618 23 0 0 0 chr12 4453280 4453303 -116804227 + AT_rich Low_complexity Low_complexity 1 23 0 9 618 198 0 0 0 chr12 4453494 4453516 -116804014 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 618 338 355 99 0 chr12 4454343 4454495 -116803035 + MIRb SINE MIR 79 245 -23 9 618 203 237 0 0 chr12 4454945 4454983 -116802547 + G-rich Low_complexity Low_complexity 6 43 0 9 618 633 304 78 38 chr12 4455573 4455918 -116801612 + ORR1E LTR MaLR 1 359 0 9 618 183 315 130 20 chr12 4456272 4456418 -116801112 - MIR SINE MIR -97 165 4 9 619 232 401 35 0 chr12 4456615 4456817 -116800713 - L4 LINE RTE -425 1604 1396 9 619 409 247 0 0 chr12 4457178 4457251 -116800279 - ID4 SINE ID -9 74 2 9 619 404 278 30 67 chr12 4457259 4457394 -116800136 - B1F SINE Alu -19 130 1 9 619 254 330 114 19 chr12 4457772 4457982 -116799548 + L1M5 LINE L1 5373 5602 -522 9 619 601 232 77 32 chr12 4458075 4458231 -116799299 + RSINE1 SINE B4 3 165 0 9 619 364 316 7 7 chr12 4458523 4458660 -116798870 - MLT1K LTR MaLR -5 590 454 9 619 3432 86 23 15 chr12 4467037 4467509 -116790021 + L1_Mus2 LINE L1 6091 6566 0 9 619 1998 257 32 16 chr12 4467563 4468058 -116789472 + Lx2B LINE L1 6456 6958 -42 9 619 4683 254 24 70 chr12 4468062 4470102 -116787428 + L1_Mm LINE L1 2711 4655 -1228 9 619 312 160 0 0 chr12 4470105 4470155 -116787375 - B3 SINE B2 -165 51 2 9 619 901 39 0 77 chr12 4470423 4470618 -116786912 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 619 264 293 24 0 chr12 4470903 4470985 -116786545 - Charlie4z DNA MER1_type -20 147 64 9 619 1742 295 77 47 chr12 4471121 4472146 -116785384 - Charlie7 DNA MER1_type -72 2540 1485 9 619 594 294 6 12 chr12 4472509 4472671 -116784859 - RSINE1 SINE B4 0 165 5 9 619 207 250 0 0 chr12 4472676 4472720 -116784810 + L4 LINE RTE 1984 2027 -2 9 619 673 164 112 0 chr12 4472856 4472990 -116784540 + B1_Mur1 SINE Alu 1 149 0 9 619 816 196 46 83 chr12 4473022 4473239 -116784291 + B3 SINE B2 3 211 -5 9 619 24 0 0 0 chr12 4473428 4473452 -116784078 + AT_rich Low_complexity Low_complexity 1 24 0 9 619 266 290 54 14 chr12 4475933 4476080 -116781450 + LTR90A LTR LTR 262 414 -562 9 619 297 314 25 0 chr12 4476269 4476387 -116781143 + MIRb SINE MIR 32 152 -116 9 619 193 273 0 35 chr12 4476397 4476454 -116781076 + MIRm SINE MIR 222 276 0 9 619 779 302 16 0 chr12 4476544 4476792 -116780738 - MER2 DNA MER2_type -1 344 93 9 619 33 43 0 0 chr12 4476793 4476840 -116780690 + AT_rich Low_complexity Low_complexity 1 47 0 9 619 283 274 14 0 chr12 4476861 4476934 -116780596 - ID4_ SINE ID -8 75 2 9 619 235 195 0 0 chr12 4477182 4477223 -116780307 + GA-rich Low_complexity Low_complexity 4 44 0 9 619 1352 55 60 0 chr12 4477348 4477531 -116779999 + B2_Mm2 SINE B2 1 194 -1 1 619 212 225 0 0 chr12 4477620 4477660 -116779870 - PB1 SINE Alu -7 120 81 1 619 184 255 64 0 chr12 4477681 4477728 -116779802 - MIRc SINE MIR -18 250 201 1 619 300 111 0 0 chr12 4477867 4477912 -116779618 + (T)n Simple_repeat Simple_repeat 1 45 0 1 619 2941 65 22 40 chr12 4477912 4478118 -116779412 - MTA_Mm LTR MaLR -2 394 181 1 619 206 32 0 31 chr12 4478118 4478150 -116779380 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 619 1032 80 7 21 chr12 4478150 4478291 -116779239 - B1_Mus1 SINE Alu -9 139 1 1 619 2941 65 22 40 chr12 4478291 4478484 -116779046 - MTA_Mm LTR MaLR -216 180 2 1 619 570 313 0 24 chr12 4479048 4479215 -116778315 + RSINE1 SINE B4 3 165 0 1 619 423 0 0 0 chr12 4479431 4479478 -116778052 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 619 234 269 133 9 chr12 4479631 4479736 -116777794 + PB1 SINE Alu 3 120 -7 1 619 244 321 12 12 chr12 4479749 4479831 -116777699 + ID4_ SINE ID 2 83 0 1 619 636 148 0 0 chr12 4480204 4480312 -116777218 + (GAAA)n Simple_repeat Simple_repeat 3 110 0 1 619 195 129 0 0 chr12 4481335 4481366 -116776164 + (CATA)n Simple_repeat Simple_repeat 3 33 0 1 619 216 0 0 0 chr12 4482775 4482799 -116774731 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 619 30 59 0 0 chr12 4483270 4483321 -116774209 + GC_rich Low_complexity Low_complexity 1 51 0 1 619 21 0 0 0 chr12 4483555 4483576 -116773954 + GC_rich Low_complexity Low_complexity 1 21 0 1 619 340 97 0 31 chr12 4483605 4483669 -116773861 + (CCG)n Simple_repeat Simple_repeat 2 63 0 1 619 22 88 0 0 chr12 4483710 4483767 -116773763 + GC_rich Low_complexity Low_complexity 1 57 0 1 619 180 0 0 0 chr12 4483774 4483794 -116773736 + (CCG)n Simple_repeat Simple_repeat 2 21 0 1 619 402 74 0 0 chr12 4484033 4484087 -116773443 + (CCG)n Simple_repeat Simple_repeat 2 55 0 1 619 184 169 0 73 chr12 4484087 4484183 -116773347 + C-rich Low_complexity Low_complexity 2 90 0 1 619 219 288 55 0 chr12 4484838 4484911 -116772619 + L3 LINE CR1 4317 4393 -96 1 619 1234 179 5 0 chr12 4485882 4486089 -116771441 + B3 SINE B2 3 210 -6 1 619 291 330 9 0 chr12 4486168 4486277 -116771253 - PB1D10 SINE Alu -1 116 7 1 619 224 340 10 20 chr12 4486188 4486287 -116771243 - ID_B1 SINE B4 -48 176 79 1 619 592 297 68 95 chr12 4487023 4487317 -116770213 + B4A SINE B4 1 286 -6 1 619 264 282 14 0 chr12 4487571 4487642 -116769888 - ID SINE ID -151 73 2 1 619 219 36 0 0 chr12 4487800 4487828 -116769702 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 619 1383 79 17 0 chr12 4488080 4488257 -116769273 + B2_Mm2 SINE B2 2 181 -14 1 619 527 291 21 7 chr12 4488286 4488428 -116769102 + B1F SINE Alu 6 149 0 1 619 319 362 73 17 chr12 4488501 4488678 -116768852 + MIRb SINE MIR 54 240 -28 1 619 1210 251 149 2 chr12 4488708 4489116 -116768414 + LTR65 LTR ERV1 1 468 -201 1 619 338 247 26 0 chr12 4489844 4489921 -116767609 - ID4_ SINE ID -3 80 2 1 619 487 246 52 9 chr12 4489963 4490078 -116767452 - PB1D7 SINE Alu 0 120 1 1 619 214 292 0 30 chr12 4490082 4490149 -116767381 - PB1D10 SINE Alu -8 109 45 1 619 712 164 200 0 chr12 4492329 4492494 -116765036 + B3 SINE B2 4 201 -15 1 619 745 270 22 0 chr12 4493607 4493792 -116763738 + B4A SINE B4 74 262 -30 1 619 408 236 26 35 chr12 4493976 4494090 -116763440 + B3 SINE B2 101 213 -3 1 619 254 228 35 34 chr12 4494311 4494410 -116763120 + L2a LINE L2 3291 3426 0 1 619 709 78 45 7 chr12 4494932 4495086 -116762444 + (TG)n Simple_repeat Simple_repeat 2 161 0 1 619 684 241 40 155 chr12 4495087 4495338 -116762192 - B4 SINE B4 -22 270 49 1 619 949 236 5 0 chr12 4495746 4495941 -116761589 + B3 SINE B2 1 196 -20 1 619 671 133 53 38 chr12 4496170 4496303 -116761227 + B1_Mur3 SINE Alu 9 143 -6 1 619 189 0 0 0 chr12 4496303 4496324 -116761206 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 619 22 0 0 0 chr12 4497461 4497483 -116760047 + AT_rich Low_complexity Low_complexity 1 22 0 1 619 318 269 39 0 chr12 4497485 4497563 -116759967 + B1F1 SINE Alu 3 83 -66 1 619 656 253 189 6 chr12 4497570 4497745 -116759785 + ID_B1 SINE B4 8 214 -10 1 619 821 105 33 0 chr12 4497746 4497898 -116759632 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 1 619 555 56 0 0 chr12 4497900 4497971 -116759559 + (GAAA)n Simple_repeat Simple_repeat 1 71 0 1 619 708 296 54 36 chr12 4497979 4498256 -116759274 + B4 SINE B4 9 290 -2 1 619 1142 81 0 0 chr12 4498580 4498728 -116758802 + B1_Mus1 SINE Alu 1 148 0 1 619 2111 134 25 8 chr12 4498961 4499314 -116758216 - RLTR15 LTR ERVK 0 359 1 1 619 316 0 0 43 chr12 4499564 4499610 -116757920 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 619 1139 58 0 0 chr12 4499610 4499747 -116757783 - B1_Mus2 SINE Alu -10 137 1 1 619 239 206 247 0 chr12 4500002 4500075 -116757455 - MLT1J1 LTR MaLR -351 93 3 1 619 1165 243 27 47 chr12 4500161 4500459 -116757071 + B4A SINE B4 1 292 0 2 619 268 271 49 13 chr12 4500492 4500616 -116756914 + MIR SINE MIR 49 177 -91 3 619 213 222 0 18 chr12 4500787 4500842 -116756688 + CT-rich Low_complexity Low_complexity 1 54 0 4 619 330 26 0 0 chr12 4500842 4500881 -116756649 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 619 254 278 0 53 chr12 4500907 4500983 -116756547 + ID4 SINE ID 9 80 -3 6 619 689 224 75 93 chr12 4502916 4503142 -116754388 + Lx8 LINE L1 7099 7320 -153 7 619 232 243 35 148 chr12 4503012 4503181 -116754349 + RMER1C Other Other 1077 1226 -116 8 619 1173 75 0 0 chr12 4503188 4503334 -116754196 - B1_Mus2 SINE Alu 0 147 2 9 619 22 0 0 0 chr12 4504753 4504775 -116752755 + AT_rich Low_complexity Low_complexity 1 22 0 1 619 413 81 16 0 chr12 4504957 4505019 -116752511 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 619 939 48 0 0 chr12 4505030 4505154 -116752376 - B1_Mus1 SINE Alu 0 148 25 1 619 332 218 0 121 chr12 4505065 4505164 -116752366 - MT2B LTR ERVL -337 264 178 1 619 420 297 27 33 chr12 4505774 4505924 -116751606 + B1F1 SINE Alu 1 149 0 1 619 350 100 0 0 chr12 4506335 4506385 -116751145 - B3 SINE B2 -163 53 4 1 619 206 171 24 0 chr12 4506523 4506564 -116750966 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 619 1201 61 0 0 chr12 4507046 4507193 -116750337 + B1_Mm SINE Alu 1 147 0 1 619 378 281 0 64 chr12 4507256 4507366 -116750164 + PB1D10 SINE Alu 14 116 -1 1 619 664 238 26 67 chr12 4507586 4507741 -116749789 + B3A SINE B2 1 156 -42 1 619 207 69 0 0 chr12 4507741 4507770 -116749760 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 619 664 238 26 67 chr12 4507770 4507808 -116749722 + B3A SINE B2 157 186 -12 1 619 560 240 6 0 chr12 4507827 4508006 -116749524 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 619 195 184 0 0 chr12 4508006 4508044 -116749486 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 2 619 382 49 33 0 chr12 4508670 4508731 -116748799 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 619 211 346 12 0 chr12 4509362 4509443 -116748087 + MIRm SINE MIR 194 275 -1 2 619 204 367 9 44 chr12 4509734 4509848 -116747682 - MIR SINE MIR -59 149 40 2 619 213 297 96 55 chr12 4509853 4509999 -116747531 + MIRb SINE MIR 44 195 -73 2 619 1107 182 20 5 chr12 4510147 4510346 -116747184 - B3 SINE B2 -10 206 5 2 619 237 132 0 0 chr12 4510800 4510838 -116746692 + (GAA)n Simple_repeat Simple_repeat 2 39 0 2 619 237 347 16 62 chr12 4511945 4512074 -116745456 + MIRb SINE MIR 125 247 -21 2 619 346 204 0 20 chr12 4512642 4512742 -116744788 + CT-rich Low_complexity Low_complexity 3 100 0 3 619 888 182 0 0 chr12 4512750 4512898 -116744632 - B1_Mur1 SINE Alu 0 149 2 3 619 315 0 0 0 chr12 4512907 4512942 -116744588 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 3 619 383 260 15 68 chr12 4512942 4513068 -116744462 - ID_B1 SINE B4 -13 211 91 3 619 255 31 0 0 chr12 4513353 4513385 -116744145 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 619 1343 255 25 19 chr12 4513436 4513804 -116743726 - Tigger7 DNA MER2_type -2121 370 1 3 619 258 56 0 0 chr12 4514698 4514734 -116742796 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 619 342 0 0 0 chr12 4515196 4515234 -116742296 + (T)n Simple_repeat Simple_repeat 1 38 0 3 619 434 240 145 15 chr12 4515277 4515408 -116742122 - B1F SINE Alu 0 149 2 3 619 801 276 26 68 chr12 4515544 4515849 -116741681 - B4A SINE B4 -2 290 2 3 619 361 71 94 57 chr12 4515859 4515949 -116741581 - B1_Mur4 SINE Alu -21 128 42 4 619 552 163 0 0 chr12 4516019 4516172 -116741358 + CT-rich Low_complexity Low_complexity 28 180 0 4 619 267 256 0 47 chr12 4517221 4517307 -116740223 + 4.5SRNA scRNA scRNA 10 91 -3 4 619 656 143 0 0 chr12 4517250 4517348 -116740182 + B1_Mur2 SINE Alu 40 137 -12 4 619 405 0 0 0 chr12 4517348 4517393 -116740137 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 619 313 205 0 13 chr12 4517450 4517529 -116740001 + L1MC3 LINE L1 7706 7783 -2 4 619 770 260 29 9 chr12 4518159 4518369 -116739161 - B3 SINE B2 -2 214 1 4 619 617 240 51 20 chr12 4518369 4518565 -116738965 + RMER5 LTR ERV1 333 534 0 4 619 221 432 17 0 chr12 4518639 4518757 -116738773 - MIRb SINE MIR -115 153 34 4 619 767 188 9 6 chr12 4518850 4519174 -116738356 + (CATA)n Simple_repeat Simple_repeat 1 325 0 4 619 599 205 132 26 chr12 4519251 4519441 -116738089 - MLT1A LTR MaLR -10 364 155 5 619 300 324 83 35 chr12 4519465 4519609 -116737921 - MLT1A LTR MaLR -214 151 1 5 619 276 243 41 65 chr12 4519621 4519744 -116737786 + BC1_Mm scRNA scRNA 7 126 -26 5 619 237 246 15 15 chr12 4519747 4519813 -116737717 + GA-rich Low_complexity Low_complexity 2 67 0 5 619 552 297 6 61 chr12 4520240 4520405 -116737125 + RSINE1 SINE B4 3 158 -7 5 619 291 270 31 2 chr12 4520480 4520567 -116736963 + B3A SINE B2 104 193 -23 5 619 723 189 188 6 chr12 4521180 4521361 -116736169 - URR1B DNA MER1_type -5 220 7 5 619 660 71 0 0 chr12 4521405 4521504 -116736026 + (GTTTG)n Simple_repeat Simple_repeat 2 100 0 5 619 1174 43 0 0 chr12 4521504 4521644 -116735886 - B1_Mus1 SINE Alu -8 140 1 5 619 192 77 0 0 chr12 4521810 4521836 -116735694 + (GGA)n Simple_repeat Simple_repeat 3 28 0 5 619 1156 229 178 9 chr12 4522391 4522734 -116734796 - MTC LTR MaLR -20 401 1 5 619 219 315 19 0 chr12 4522734 4522786 -116734744 + ID4_ SINE ID 21 73 -10 6 619 249 322 8 34 chr12 4522968 4523087 -116734443 + (CA)n Simple_repeat Simple_repeat 2 117 0 6 619 596 168 56 0 chr12 4523090 4523197 -116734333 - B1_Mur1 SINE Alu -35 114 2 6 619 1240 34 0 0 chr12 4523369 4523515 -116734015 + B1_Mus2 SINE Alu 1 146 -1 6 619 366 123 0 0 chr12 4523517 4523574 -116733956 + (A)n Simple_repeat Simple_repeat 1 57 0 6 619 1435 70 37 0 chr12 4523624 4523811 -116733719 + B2_Mm2 SINE B2 2 195 0 6 619 209 33 33 0 chr12 4523811 4523841 -116733689 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 6 619 1151 64 0 0 chr12 4523841 4523981 -116733549 + B1_Mus1 SINE Alu 2 141 -7 6 619 792 32 0 0 chr12 4523985 4524080 -116733450 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 6 619 623 255 100 70 chr12 4524489 4524890 -116732640 + L1M5 LINE L1 3580 3992 -2154 6 619 904 259 67 32 chr12 4525042 4525357 -116732173 - L1MCb LINE L1 -4958 1087 762 7 619 681 221 7 14 chr12 4525569 4525716 -116731814 + RSINE1 SINE B4 8 153 -12 7 619 276 163 0 0 chr12 4525759 4525802 -116731728 - L1MCb LINE L1 -5423 622 580 7 619 23 0 0 0 chr12 4525835 4525858 -116731672 + GC_rich Low_complexity Low_complexity 1 23 0 7 619 790 279 132 41 chr12 4525944 4526359 -116731171 - L1MCa LINE L1 -5950 558 106 7 619 23 33 0 0 chr12 4526445 4526475 -116731055 + AT_rich Low_complexity Low_complexity 1 30 0 7 619 333 0 0 0 chr12 4526528 4526565 -116730965 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 7 619 622 271 83 0 chr12 4526575 4526767 -116730763 - ID_B1 SINE B4 -13 211 4 7 619 21 0 0 0 chr12 4526905 4526926 -116730604 + AT_rich Low_complexity Low_complexity 1 21 0 7 619 1050 82 13 40 chr12 4526961 4527113 -116730417 + B1_Mur4 SINE Alu 1 148 -2 7 619 274 221 39 13 chr12 4527273 4527351 -116730179 - Lx8 LINE L1 -2 7471 7392 7 619 247 217 0 77 chr12 4527351 4527405 -116730125 + B1F SINE Alu 86 139 -10 8 619 288 0 0 0 chr12 4527405 4527437 -116730093 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 8 619 2044 279 122 51 chr12 4527629 4528046 -116729484 + Charlie1 DNA MER1_type 1467 1873 -908 8 619 1022 82 0 7 chr12 4528046 4528193 -116729337 + (GAA)n Simple_repeat Simple_repeat 2 147 0 8 619 2044 279 122 51 chr12 4528193 4528996 -116728534 + Charlie1 DNA MER1_type 1874 2773 -8 8 619 535 307 87 43 chr12 4529385 4529661 -116727869 + B4A SINE B4 5 292 0 8 619 264 239 67 92 chr12 4530470 4530590 -116726940 + LTR90B LTR LTR 678 794 -2 8 619 322 266 12 12 chr12 4531869 4531949 -116725581 - ID4_ SINE ID -1 82 3 8 619 247 278 0 0 chr12 4532497 4532551 -116724979 - ID4_ SINE ID -26 57 4 8 619 223 297 137 10 chr12 4532642 4532744 -116724786 - MIRc SINE MIR -138 130 16 8 619 234 0 0 0 chr12 4532751 4532777 -116724753 + (T)n Simple_repeat Simple_repeat 1 26 0 8 619 275 253 220 0 chr12 4532887 4532978 -116724552 - ID_B1 SINE B4 -15 209 99 9 619 492 371 17 34 chr12 4533056 4533352 -116724178 - B4A SINE B4 0 292 2 9 619 24 32 0 0 chr12 4533360 4533391 -116724139 + AT_rich Low_complexity Low_complexity 1 31 0 9 619 328 345 36 7 chr12 4533553 4533693 -116723837 + MIRc SINE MIR 3 146 -122 9 619 1021 266 38 45 chr12 4534698 4534989 -116722541 + B4A SINE B4 4 292 0 9 619 265 204 0 0 chr12 4535418 4535467 -116722063 + MARNA DNA Mariner 181 229 -357 9 619 218 239 15 15 chr12 4535887 4535955 -116721575 + GA-rich Low_complexity Low_complexity 3 70 0 9 619 903 211 39 10 chr12 4536162 4536368 -116721162 - ORR1E-int LTR MaLR -1342 238 27 9 619 423 277 127 63 chr12 4536397 4536728 -116720802 - ORR1E LTR MaLR -5 354 3 9 619 217 269 14 29 chr12 4536755 4536824 -116720706 - L2a LINE L2 -253 3173 3106 9 619 1272 70 4 8 chr12 4537003 4537975 -116719555 + (TCTCTG)n Simple_repeat Simple_repeat 1 968 0 9 619 315 177 38 0 chr12 4537976 4538055 -116719475 + Lx9 LINE L1 7563 7644 0 1 619 310 239 56 0 chr12 4538106 4538177 -116719353 + B4A SINE B4 146 220 -72 1 619 234 0 0 0 chr12 4538202 4538228 -116719302 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 619 463 208 46 26 chr12 4539477 4539630 -116717900 - MER33 DNA MER1_type 0 324 169 1 619 237 179 161 0 chr12 4539632 4539688 -116717842 - MER33 DNA MER1_type -259 65 2 1 619 372 77 0 0 chr12 4539848 4539900 -116717630 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 619 696 243 14 0 chr12 4539904 4540052 -116717478 - B3A SINE B2 -48 150 1 1 619 265 281 93 70 chr12 4540708 4540880 -116716650 + MLT1N2 LTR MaLR 375 550 -12 1 619 323 228 136 16 chr12 4541506 4541631 -116715899 + L1M5 LINE L1 5191 5330 -816 1 619 285 294 118 0 chr12 4541858 4541977 -116715553 + L1MC LINE L1 5593 5725 -2157 1 619 441 0 0 0 chr12 4542137 4542186 -116715344 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 619 297 303 0 39 chr12 4542254 4542357 -116715173 + RSINE1 SINE B4 6 104 -61 1 619 277 233 23 23 chr12 4543217 4543314 -116714216 - L1ME2 LINE L1 -78 6095 5999 1 619 261 0 0 0 chr12 4543369 4543398 -116714132 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 619 441 0 0 0 chr12 4543630 4543679 -116713851 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 619 441 54 0 0 chr12 4543679 4543734 -116713796 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 619 875 304 73 53 chr12 4543736 4544378 -116713152 - L1_Mur3 LINE L1 -108 5772 5118 1 619 297 0 0 0 chr12 4544523 4544556 -116712974 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1 619 809 152 43 0 chr12 4544558 4544696 -116712834 - B1_Mur4 SINE Alu -1 149 6 1 619 569 234 127 66 chr12 4544808 4545005 -116712525 - B3 SINE B2 -5 211 3 1 619 1192 259 143 16 chr12 4545013 4545516 -116712014 - L1M2 LINE L1 -980 5163 4597 1 619 229 316 38 67 chr12 4545578 4545683 -116711847 + PB1D10 SINE Alu 4 105 -44 1 619 276 249 54 0 chr12 4545932 4546047 -116711483 - L1M5 LINE L1 -826 5320 5200 1 619 1077 247 109 23 chr12 4546312 4546698 -116710832 - MTD LTR MaLR 0 419 1 1 619 228 319 0 14 chr12 4546711 4546781 -116710749 + GA-rich Low_complexity Low_complexity 4 72 0 1 619 447 281 29 17 chr12 4546908 4547082 -116710448 + LTR78 LTR ERV1 1127 1302 -2 1 619 1132 68 7 0 chr12 4547849 4547995 -116709535 + B1_Mus1 SINE Alu 2 148 0 1 619 552 68 0 0 chr12 4547995 4548068 -116709462 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 619 816 186 14 0 chr12 4548106 4548251 -116709279 + B1_Mus2 SINE Alu 1 147 0 1 619 367 205 197 0 chr12 4548317 4548434 -116709096 - B1_Mus2 SINE Alu -7 140 1 1 619 313 253 44 49 chr12 4548553 4548678 -116708852 + RLTR20D LTR ERVK 60 216 -362 1 619 1206 54 0 0 chr12 4548802 4548950 -116708580 - B1_Mus1 SINE Alu 0 148 1 1 619 276 350 0 77 chr12 4549095 4549250 -116708280 + RSINE1 SINE B4 11 153 -12 1 619 239 375 52 13 chr12 4549343 4549497 -116708033 + L1MC4a LINE L1 5441 5600 -2282 1 619 321 203 94 0 chr12 4549502 4549566 -116707964 + ID4_ SINE ID 3 72 -11 1 619 3465 33 5 0 chr12 4549727 4550121 -116707409 + MTA_Mm LTR MaLR 1 396 0 1 619 601 252 30 0 chr12 4550169 4550304 -116707226 + B1F1 SINE Alu 3 141 -8 1 619 744 193 0 49 chr12 4550580 4550722 -116706808 + B1_Mur1 SINE Alu 3 137 -12 1 619 1131 114 103 0 chr12 4550722 4550897 -116706633 + B2_Mm2 SINE B2 2 194 -1 1 619 1256 27 0 7 chr12 4550897 4551044 -116706486 + B1_Mm SINE Alu 1 147 0 1 619 235 288 0 0 chr12 4551177 4551236 -116706294 + ID4 SINE ID 8 66 -17 1 619 321 285 47 29 chr12 4551280 4551450 -116706080 + L1MC4a LINE L1 5677 5849 -2033 1 619 268 300 22 0 chr12 4551473 4551563 -116705967 + B4A SINE B4 2 93 -199 1 619 1068 187 14 98 chr12 4551563 4551848 -116705682 - ORR1D1 LTR MaLR -99 275 15 1 619 2005 163 68 20 chr12 4551880 4551975 -116705555 + MTC LTR MaLR 3 99 -322 1 619 600 40 0 0 chr12 4551975 4552050 -116705480 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 1 619 1115 52 0 0 chr12 4552050 4552184 -116705346 - B1_Mus1 SINE Alu -13 135 2 1 619 2005 163 68 20 chr12 4552184 4552487 -116705043 + MTC LTR MaLR 100 420 -1 1 619 358 230 18 99 chr12 4552559 4552670 -116704860 + MT2B LTR ERVL 156 257 -344 1 619 848 160 0 20 chr12 4552571 4552718 -116704812 + B1_Mur3 SINE Alu 6 149 0 1 619 704 241 35 35 chr12 4552910 4553108 -116704422 + B3 SINE B2 15 212 -4 1 619 393 181 0 0 chr12 4553263 4553335 -116704195 + BC1_Mm scRNA scRNA 2 73 -79 1 619 1044 53 76 0 chr12 4553881 4554012 -116703518 + B1_Mus1 SINE Alu 2 142 -6 1 619 1021 118 6 6 chr12 4554014 4554184 -116703346 + (GAAAA)n Simple_repeat Simple_repeat 2 171 0 1 619 1245 27 0 0 chr12 4554184 4554330 -116703200 + B1_Mus1 SINE Alu 3 148 0 1 619 2130 262 74 19 chr12 4556256 4556921 -116700609 - Lx8 LINE L1 -454 7019 6319 1 619 21 0 0 0 chr12 4557341 4557362 -116700168 + AT_rich Low_complexity Low_complexity 1 21 0 1 619 246 286 84 14 chr12 4557395 4557537 -116699993 - L1MA6 LINE L1 -53 6247 6096 1 619 902 154 41 14 chr12 4557674 4557819 -116699711 - B1_Mur4 SINE Alu 0 150 2 1 619 357 24 0 0 chr12 4558076 4558118 -116699412 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 619 416 269 81 40 chr12 4558382 4558506 -116699024 - RSINE1 SINE B4 -35 130 2 1 619 203 0 37 0 chr12 4558549 4558576 -116698954 + (CCA)n Simple_repeat Simple_repeat 2 29 0 1 619 354 293 31 31 chr12 4558798 4558925 -116698605 - B4A SINE B4 -165 127 1 1 619 731 245 49 15 chr12 4558937 4559140 -116698390 - B3 SINE B2 -6 210 1 1 619 253 167 0 62 chr12 4559191 4559255 -116698275 + RMER4B LTR ERVK 453 512 -73 1 619 2464 33 0 3 chr12 4559255 4559558 -116697972 - RLTRETN_Mm LTR ERVK -20 302 1 1 619 192 72 33 82 chr12 4559606 4559667 -116697863 + A-rich Low_complexity Low_complexity 2 59 0 1 619 2820 42 45 9 chr12 4560407 4560741 -116696789 - ORR1A1 LTR MaLR 0 346 1 1 619 299 306 94 90 chr12 4561009 4561210 -116696320 - MLT1I LTR MaLR -177 267 66 1 619 1245 48 0 20 chr12 4561526 4561675 -116695855 + B1_Mus2 SINE Alu 2 147 0 1 619 306 0 0 0 chr12 4561679 4561713 -116695817 + (A)n Simple_repeat Simple_repeat 1 34 0 1 619 895 292 29 85 chr12 4561848 4561937 -116695593 + B4A SINE B4 3 85 -207 1 619 4086 125 61 8 chr12 4561937 4562590 -116694940 + Lx3C LINE L1 6279 6966 -10 1 619 895 292 29 85 chr12 4562590 4562807 -116694723 + B4A SINE B4 86 292 0 1 619 41 31 0 15 chr12 4562811 4562836 -116694694 + AT_rich Low_complexity Low_complexity 1 25 0 1 619 327 158 66 0 chr12 4562836 4562912 -116694618 - L1Md_F3 LINE L1 0 6584 6504 1 619 41 31 0 15 chr12 4562912 4562952 -116694578 + AT_rich Low_complexity Low_complexity 1 40 0 1 619 4730 146 107 59 chr12 4563088 4563386 -116694144 + RLTR25A LTR ERVK 2 329 -774 1 619 384 22 0 0 chr12 4563386 4563431 -116694099 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 619 4730 146 107 59 chr12 4563431 4563641 -116693889 + RLTR25A LTR ERVK 330 514 -589 1 619 1244 47 0 20 chr12 4563641 4563792 -116693738 - B1_Mus1 SINE Alu 0 148 1 1 619 4730 146 107 59 chr12 4563792 4564145 -116693385 + RLTR25A LTR ERVK 515 871 -232 1 619 336 48 129 0 chr12 4564145 4564207 -116693323 + L1_Mus3 LINE L1 6569 6638 0 1 619 4730 146 107 59 chr12 4564207 4564395 -116693135 + RLTR25A LTR ERVK 872 1103 0 1 619 663 257 50 16 chr12 4564395 4564577 -116692953 + B3 SINE B2 26 213 -3 1 619 548 290 156 40 chr12 4564657 4564885 -116692645 - L1ME3B LINE L1 -282 5958 5701 1 619 428 188 0 14 chr12 4564885 4564955 -116692575 + ID4_ SINE ID 5 73 -10 1 619 548 290 156 40 chr12 4564955 4565150 -116692380 - L1ME3B LINE L1 -540 5700 5486 1 619 353 281 8 38 chr12 4565184 4565299 -116692231 - PB1D10 SINE Alu 0 120 1 1 619 398 69 0 17 chr12 4565316 4565375 -116692155 + (TCC)n Simple_repeat Simple_repeat 1 58 0 1 619 1324 103 37 16 chr12 4565375 4565562 -116691968 - B2_Mm2 SINE B2 -3 192 2 1 619 273 29 0 0 chr12 4565880 4565914 -116691616 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 619 331 303 0 0 chr12 4566773 4566849 -116690681 - ID4_ SINE ID 0 83 8 1 619 354 297 25 59 chr12 4566937 4567026 -116690504 - ID_B1 SINE B4 -26 198 112 1 619 2644 110 34 5 chr12 4567026 4567409 -116690121 - ORR1B1 LTR MaLR 0 394 1 1 619 354 297 25 59 chr12 4567409 4567437 -116690093 - ID_B1 SINE B4 -113 111 85 1 619 2502 141 21 16 chr12 4567559 4567992 -116689538 + Lx6 LINE L1 5099 5533 -347 1 619 1452 202 56 82 chr12 4567993 4568403 -116689127 + RMER16 LTR ERVK 3 533 0 1 619 6307 92 58 14 chr12 4568403 4569331 -116688199 + RMER16-int LTR ERVK 1 969 -4437 1 619 1228 76 0 0 chr12 4569333 4569478 -116688052 + B1_Mus2 SINE Alu 3 147 0 1 619 492 244 0 0 chr12 4569478 4569605 -116687925 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 619 29675 95 35 38 chr12 4569606 4570294 -116687236 + RMER16-int LTR ERVK 966 1691 -3715 1 619 914 122 0 7 chr12 4570294 4570443 -116687087 + (TC)n Simple_repeat Simple_repeat 2 149 0 1 619 29675 95 35 38 chr12 4570443 4570729 -116686801 + RMER16-int LTR ERVK 1692 1971 -3435 1 619 1464 87 0 5 chr12 4570729 4570915 -116686615 + B2_Mm2 SINE B2 2 186 -9 1 619 29675 95 35 38 chr12 4570915 4572192 -116685338 + RMER16-int LTR ERVK 1972 3208 -2198 1 619 1294 47 135 6 chr12 4572192 4572362 -116685168 - B2_Mm1t SINE B2 -1 192 1 1 619 29675 95 35 38 chr12 4572362 4574564 -116682966 + RMER16-int LTR ERVK 3209 5405 -1 1 619 1660 189 29 80 chr12 4574564 4574993 -116682537 + RMER16 LTR ERVK 1 533 0 1 619 2815 193 58 7 chr12 4574993 4575663 -116681867 + Lx6 LINE L1 5537 6271 -1189 1 619 1866 123 57 91 chr12 4575676 4575918 -116681612 - ORR1A1 LTR MaLR -8 338 126 1 619 1305 48 0 0 chr12 4575918 4576065 -116681465 - B1_Mus2 SINE Alu 0 147 1 1 619 1866 123 57 91 chr12 4576065 4576172 -116681358 - ORR1A1 LTR MaLR -221 125 1 1 619 3223 230 107 44 chr12 4576172 4576388 -116681142 + Lx6 LINE L1 6521 6748 -712 1 619 485 0 33 0 chr12 4576388 4576448 -116681082 + (AATAG)n Simple_repeat Simple_repeat 3 64 0 1 619 3223 230 107 44 chr12 4576448 4577091 -116680439 + Lx6 LINE L1 6749 7434 -26 1 619 644 274 108 0 chr12 4577307 4577493 -116680037 + ID_B1 SINE B4 1 206 -18 1 619 1070 200 68 0 chr12 4577763 4577953 -116679577 + B3 SINE B2 2 204 -12 1 619 537 16 0 0 chr12 4577953 4578015 -116679515 + (TAA)n Simple_repeat Simple_repeat 2 63 0 1 619 694 206 35 14 chr12 4578030 4578173 -116679357 - B1_Mus2 SINE Alu 0 147 2 2 619 1689 32 21 0 chr12 4579191 4579380 -116678150 - B2_Mm1t SINE B2 0 193 1 2 619 386 255 0 62 chr12 4579504 4579617 -116677913 - B1_Mur4 SINE Alu -9 141 36 2 619 553 241 226 0 chr12 4579648 4579847 -116677683 - MER31B LTR ERV1 -217 249 6 2 619 421 299 199 23 chr12 4580109 4580280 -116677250 - Tigger5 DNA MER2_type -2152 254 54 2 619 189 0 0 0 chr12 4580280 4580301 -116677229 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2 619 204 326 79 0 chr12 4580720 4580809 -116676721 - MIRc SINE MIR -125 143 48 2 619 7039 180 99 23 chr12 4580968 4581870 -116675660 - MERVL_2A-int LTR ERVL -4026 1735 774 2 619 396 0 0 0 chr12 4581870 4581914 -116675616 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 619 216 97 0 0 chr12 4581914 4581944 -116675586 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 619 7039 183 107 25 chr12 4581944 4582604 -116674926 - MERVL_2A-int LTR ERVL -4988 773 2 2 619 283 93 47 0 chr12 4582632 4582675 -116674855 - B2_Mm2 SINE B2 -150 45 1 2 619 388 269 158 8 chr12 4582706 4582826 -116674704 + B1F1 SINE Alu 2 139 -10 2 619 207 0 0 0 chr12 4582913 4582936 -116674594 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2 619 307 149 13 13 chr12 4582991 4583066 -116674464 + (TATG)n Simple_repeat Simple_repeat 1 75 0 2 619 256 333 13 0 chr12 4583078 4583153 -116674377 - ID4_ SINE ID -3 80 5 2 619 433 208 26 0 chr12 4583582 4583659 -116673871 + B3A SINE B2 1 79 -119 2 619 216 167 0 0 chr12 4583665 4583718 -116673812 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 2 619 655 157 15 59 chr12 4583754 4583766 -116673764 - B1_Mur3 SINE Alu 0 149 138 2 619 1191 43 43 0 chr12 4583766 4583907 -116673623 - B1_Mus2 SINE Alu 0 147 1 2 619 655 157 15 59 chr12 4583907 4584006 -116673524 - B1_Mur3 SINE Alu -12 137 40 2 619 845 158 14 48 chr12 4584006 4584152 -116673378 + B1_Mur1 SINE Alu 1 141 -8 2 619 655 157 15 59 chr12 4584152 4584174 -116673356 - B1_Mur3 SINE Alu -110 39 21 2 619 382 167 83 0 chr12 4584170 4584230 -116673300 - B1_Mus1 SINE Alu -66 82 18 2 619 329 279 31 31 chr12 4584220 4584316 -116673214 - MER21B LTR ERV1 -767 96 1 2 619 5866 71 69 6 chr12 4584363 4584922 -116672608 + L1VL2 LINE L1 173 763 -5572 2 619 288 0 0 0 chr12 4584922 4584954 -116672576 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2 619 5866 67 56 135 chr12 4584954 4586092 -116671438 + L1VL2 LINE L1 764 1826 -1789 2 619 1622 26 0 63 chr12 4586920 4587125 -116670405 + B2_Mm1a SINE B2 2 193 0 2 619 207 0 0 0 chr12 4587187 4587210 -116670320 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 619 1301 91 46 0 chr12 4587248 4587423 -116670107 + B2_Mm1a SINE B2 2 184 -9 2 620 36 70 0 0 chr12 4587574 4587645 -116669885 + AT_rich Low_complexity Low_complexity 1 71 0 2 620 602 283 43 14 chr12 4587856 4587996 -116669534 + B1_Mur2 SINE Alu 1 144 -5 2 620 1454 84 21 5 chr12 4588648 4588840 -116668690 - B2_Mm2 SINE B2 0 195 1 2 620 1253 55 0 7 chr12 4588990 4589138 -116668392 - B1_Mus2 SINE Alu 0 147 1 2 620 664 274 79 67 chr12 4589566 4589894 -116667636 + L1MA4 LINE L1 5604 5935 -365 2 620 226 257 213 13 chr12 4589913 4589988 -116667542 + RSINE1 SINE B4 3 92 -73 2 620 255 125 0 0 chr12 4590031 4590071 -116667459 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 620 28 61 0 0 chr12 4590076 4590125 -116667405 + AT_rich Low_complexity Low_complexity 1 49 0 2 620 1609 42 21 5 chr12 4590311 4590500 -116667030 - B2_Mm1a SINE B2 0 193 2 2 620 675 250 42 26 chr12 4590965 4591158 -116666372 + B3A SINE B2 3 198 0 2 620 220 268 35 18 chr12 4591210 4591267 -116666263 - B2_Mm1t SINE B2 -130 63 6 2 620 578 303 62 35 chr12 4591275 4591501 -116666029 - MLT1A0 LTR MaLR -131 234 3 2 620 33 56 0 0 chr12 4591605 4591659 -116665871 + AT_rich Low_complexity Low_complexity 1 54 0 2 620 539 228 34 75 chr12 4592124 4592271 -116665259 - ID_B1 SINE B4 -3 221 81 2 620 1949 134 19 34 chr12 4592902 4593226 -116664304 + ORR1A2 LTR MaLR 1 319 -8 2 620 237 328 36 36 chr12 4593551 4593647 -116663883 - B1F1 SINE Alu -14 106 11 2 620 221 303 13 13 chr12 4594419 4594496 -116663034 + CT-rich Low_complexity Low_complexity 2 78 0 2 620 1799 135 15 52 chr12 4594506 4594835 -116662695 + ORR1A4 LTR MaLR 1 317 -12 2 620 351 294 62 35 chr12 4594835 4594948 -116662582 - PB1 SINE Alu -10 117 2 2 620 206 75 50 0 chr12 4595122 4595162 -116662368 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 2 620 201 159 0 0 chr12 4595358 4595402 -116662128 + A-rich Low_complexity Low_complexity 1 44 0 2 620 515 278 26 0 chr12 4596661 4596776 -116660754 - RSINE1 SINE B4 -37 128 11 2 620 518 262 94 80 chr12 4596783 4597069 -116660461 + L1MEf LINE L1 1440 1729 -4471 2 620 632 172 0 48 chr12 4598136 4598265 -116659265 + B1_Mur3 SINE Alu 23 144 -5 2 620 241 273 13 154 chr12 4598757 4598870 -116658660 - B1F SINE Alu -7 113 13 2 620 404 82 0 27 chr12 4599193 4599268 -116658262 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 2 620 21 0 0 0 chr12 4599928 4599949 -116657581 + GC_rich Low_complexity Low_complexity 1 21 0 2 620 31 68 0 0 chr12 4600047 4600106 -116657424 + GC_rich Low_complexity Low_complexity 1 59 0 2 620 23 0 0 0 chr12 4600244 4600267 -116657263 + GC_rich Low_complexity Low_complexity 1 23 0 2 620 212 86 0 28 chr12 4600429 4600465 -116657065 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 2 620 252 0 0 0 chr12 4601490 4601518 -116656012 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 620 254 340 94 90 chr12 4601714 4601947 -116655583 - MIRb SINE MIR -14 254 21 2 620 579 268 158 19 chr12 4602495 4602704 -116654826 + MIR SINE MIR 15 252 -10 2 620 1337 233 152 0 chr12 4603314 4603636 -116653894 - MTEa LTR MaLR -4 375 5 2 620 192 246 150 53 chr12 4604246 4604379 -116653151 - L2a LINE L2 -75 3351 3206 2 620 258 322 199 0 chr12 4605142 4605313 -116652217 - MIR SINE MIR 0 262 58 2 620 488 200 133 0 chr12 4605518 4605638 -116651892 - RMER10B LTR ERVL -46 352 217 2 620 256 197 29 29 chr12 4605910 4605978 -116651552 + CT-rich Low_complexity Low_complexity 1 68 0 2 620 718 283 19 38 chr12 4605989 4606202 -116651328 - ID_B1 SINE B4 -14 210 2 2 620 259 233 25 18 chr12 4606367 4606453 -116651077 - MIR SINE MIR -46 222 132 2 620 551 131 81 0 chr12 4606472 4606571 -116650959 - PB1D9 SINE Alu 0 120 14 2 620 272 235 95 36 chr12 4606509 4606593 -116650937 - MT2B LTR ERVL -365 236 148 2 620 227 306 149 130 chr12 4606916 4607070 -116650460 + B4A SINE B4 10 166 -126 2 620 386 207 83 24 chr12 4607021 4607105 -116650425 + PB1D9 SINE Alu 27 115 -5 2 620 235 81 38 63 chr12 4607338 4607417 -116650113 + T-rich Low_complexity Low_complexity 3 79 0 2 620 226 42 20 59 chr12 4607989 4608040 -116649490 - L1Md_F2 LINE L1 0 6582 6534 2 620 371 227 176 49 chr12 4608124 4608226 -116649304 - PB1D10 SINE Alu 0 117 3 2 620 747 193 7 56 chr12 4608497 4608640 -116648890 + B1_Mur3 SINE Alu 3 138 -11 2 620 951 144 27 14 chr12 4608665 4608813 -116648717 - B1_Mur4 SINE Alu 0 150 1 2 620 38 22 0 0 chr12 4608967 4609012 -116648518 + AT_rich Low_complexity Low_complexity 1 45 0 2 620 511 202 9 52 chr12 4609453 4609568 -116647962 - RLTR11A LTR ERVK -3 525 416 2 620 489 164 0 37 chr12 4609557 4609639 -116647891 - MTE2a LTR MaLR -284 95 17 2 620 1035 215 68 7 chr12 4609677 4609972 -116647558 - L1MB7 LINE L1 -355 5829 5517 2 620 1301 34 0 20 chr12 4610222 4610371 -116647159 + B1_Mus2 SINE Alu 2 147 0 2 620 332 299 137 14 chr12 4610409 4610555 -116646975 + Charlie20a DNA Charlie 181 344 -463 2 620 21 0 0 0 chr12 4610609 4610630 -116646900 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 1334 89 28 6 chr12 4610737 4610918 -116646612 + B2_Mm2 SINE B2 3 187 -8 2 620 395 141 91 14 chr12 4611056 4611154 -116646376 + MTE2a LTR MaLR 272 379 0 2 620 210 150 0 0 chr12 4611261 4611301 -116646229 + (T)n Simple_repeat Simple_repeat 1 40 0 2 620 1110 46 0 0 chr12 4611395 4611526 -116646004 - L1_Mus2 LINE L1 0 6566 6436 2 620 2841 58 9 0 chr12 4611526 4611874 -116645656 + L1_Mus2 LINE L1 6087 6437 -129 2 620 675 275 108 28 chr12 4611874 4612087 -116645443 - B4A SINE B4 -61 231 2 2 620 660 234 119 5 chr12 4612410 4612603 -116644927 + B3 SINE B2 2 216 0 2 620 410 326 30 8 chr12 4612747 4612880 -116644650 - B1F SINE Alu -13 136 1 2 620 44 0 0 0 chr12 4612899 4612943 -116644587 + AT_rich Low_complexity Low_complexity 1 44 0 2 620 405 176 0 26 chr12 4613764 4613840 -116643690 - B1_Mur3 SINE Alu -73 76 3 2 620 690 154 48 8 chr12 4614033 4614157 -116643373 - B1_Mur1 SINE Alu -18 131 3 2 620 3122 100 15 57 chr12 4614269 4614338 -116643192 + Lx3_Mus LINE L1 6470 6538 -471 2 620 1071 45 45 0 chr12 4614338 4614471 -116643059 + B1_Mus1 SINE Alu 3 141 -7 2 620 3122 100 15 57 chr12 4614471 4614941 -116642589 + Lx3_Mus LINE L1 6539 6986 -23 2 620 494 98 250 0 chr12 4614945 4615037 -116642493 + URR1B DNA MER1_type 111 225 0 2 620 276 210 54 129 chr12 4615037 4615103 -116642427 + PB1D10 SINE Alu 59 117 0 2 620 565 227 146 21 chr12 4615111 4615255 -116642275 + RSINE1 SINE B4 4 165 0 2 620 332 299 38 38 chr12 4615659 4615819 -116641711 - RSINE1 SINE B4 -2 163 4 2 620 204 322 91 61 chr12 4616089 4616188 -116641342 - L2c LINE L2 -183 3204 3103 2 620 333 307 150 0 chr12 4617406 4617559 -116639971 + MIRb SINE MIR 18 193 -75 3 620 315 281 12 0 chr12 4617884 4617966 -116639564 - ID4 SINE ID 0 83 1 3 620 219 312 268 19 chr12 4619283 4619440 -116638090 - MIR SINE MIR -6 262 61 3 620 21 36 0 0 chr12 4620514 4620542 -116636988 + AT_rich Low_complexity Low_complexity 1 28 0 3 620 271 145 238 16 chr12 4620557 4620620 -116636910 + RSINE1 SINE B4 48 124 -41 3 620 26 0 0 0 chr12 4620733 4620759 -116636771 + AT_rich Low_complexity Low_complexity 1 26 0 3 620 1212 54 7 0 chr12 4621211 4621358 -116636172 + B1_Mus1 SINE Alu 1 148 0 3 620 465 232 208 0 chr12 4621570 4621738 -116635792 - MER3 DNA MER1_type -5 204 2 3 620 3184 104 38 30 chr12 4622326 4622822 -116634708 - Lx LINE L1 -1 6653 6154 3 620 1248 110 5 10 chr12 4622889 4623082 -116634448 + B2_Mm2 SINE B2 2 193 -2 3 620 24 32 0 0 chr12 4623155 4623186 -116634344 + AT_rich Low_complexity Low_complexity 1 31 0 3 620 1598 175 78 27 chr12 4623469 4623803 -116633727 + RMER4B LTR ERVK 215 565 -20 3 620 1514 181 19 16 chr12 4624019 4624362 -116633168 + L1Md_F LINE L1 675 962 -5654 3 620 9047 102 29 12 chr12 4624339 4625780 -116631750 + L1Md_F LINE L1 3839 5304 -579 3 620 6078 51 0 0 chr12 4625783 4626569 -116630961 - L1Md_F2 LINE L1 0 5883 5098 3 620 5634 31 1 0 chr12 4626572 4627225 -116630305 + L1Md_F2 LINE L1 5914 6567 -15 3 620 3627 92 0 0 chr12 4627233 4627741 -116629789 + L1Md_F LINE L1 5290 5797 -86 3 620 746 70 0 0 chr12 4627738 4627838 -116629692 - L1Md_F2 LINE L1 -108 6474 6375 3 620 362 48 111 0 chr12 4627838 4627901 -116629629 + L1Md_F2 LINE L1 6513 6582 0 3 620 6108 59 22 0 chr12 4627956 4628723 -116628807 + L1_Mus2 LINE L1 5783 6566 0 3 620 602 193 92 8 chr12 4629204 4629324 -116628206 + B1_Mur1 SINE Alu 1 130 -19 3 620 360 230 35 0 chr12 4629635 4629722 -116627808 - BC1_Mm scRNA scRNA -59 93 4 3 620 247 264 69 4 chr12 4629722 4629804 -116627726 + MIRm SINE MIR 45 130 -132 3 620 21 82 0 0 chr12 4630288 4630337 -116627193 + AT_rich Low_complexity Low_complexity 1 49 0 3 620 22 0 0 0 chr12 4631807 4631829 -116625701 + AT_rich Low_complexity Low_complexity 1 22 0 3 620 26 30 0 0 chr12 4632101 4632134 -116625396 + AT_rich Low_complexity Low_complexity 1 33 0 3 620 501 202 9 46 chr12 4632145 4632254 -116625276 - PB1D10 SINE Alu -2 115 11 3 620 266 286 216 60 chr12 4632254 4632279 -116625251 - ID_B1 SINE B4 -2 222 68 3 620 191 361 46 9 chr12 4632499 4632608 -116624922 - MIR SINE MIR -61 201 89 3 620 375 281 105 62 chr12 4632875 4633084 -116624446 - LTR40c LTR ERVL -240 222 5 3 620 969 177 22 8 chr12 4633769 4633960 -116623570 + B3 SINE B2 5 205 -11 3 620 298 291 29 149 chr12 4634140 4634169 -116623361 - MT2B LTR ERVL -299 302 215 3 620 557 288 0 8 chr12 4634169 4634295 -116623235 - B1_Mur2 SINE Alu -24 125 1 3 620 353 342 36 56 chr12 4634295 4634368 -116623162 - ID SINE ID -147 77 9 3 620 298 291 29 149 chr12 4634295 4634314 -116623216 - MT2B LTR ERVL -299 214 150 3 620 596 14 14 0 chr12 4634441 4634514 -116623016 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 620 1215 236 29 14 chr12 4635074 4635423 -116622107 + L1MA6 LINE L1 5947 6300 0 3 620 599 165 182 9 chr12 4636918 4637028 -116620502 - B1_Mur3 SINE Alu -18 131 3 3 620 1982 115 12 13 chr12 4637968 4638351 -116619179 - ORR1A2 LTR MaLR -51 343 1 3 620 206 268 172 82 chr12 4640028 4640162 -116617368 - MIRm SINE MIR -123 153 8 3 620 23 0 0 0 chr12 4640383 4640406 -116617124 + AT_rich Low_complexity Low_complexity 1 23 0 3 620 221 323 177 0 chr12 4640804 4640866 -116616664 + ID4 SINE ID 3 75 -8 3 620 234 0 0 0 chr12 4640866 4640892 -116616638 + (CAAAC)n Simple_repeat Simple_repeat 1 26 0 3 620 931 101 13 7 chr12 4641174 4641324 -116616206 + (TCCC)n Simple_repeat Simple_repeat 2 152 0 3 620 248 356 0 26 chr12 4641451 4641604 -116615926 + GA-rich Low_complexity Low_complexity 3 151 0 3 620 329 315 108 0 chr12 4643114 4643225 -116614305 + RSINE1 SINE B4 4 126 -39 3 620 255 309 73 0 chr12 4643773 4643896 -116613634 - MLT1A1 LTR MaLR -275 133 2 3 620 23 38 0 54 chr12 4644670 4644726 -116612804 + AT_rich Low_complexity Low_complexity 1 53 0 3 620 314 273 22 11 chr12 4644809 4644898 -116612632 + L1M2 LINE L1 4915 5004 -1139 3 620 472 287 54 0 chr12 4644906 4645035 -116612495 + B1F SINE Alu 5 140 -9 3 620 559 240 155 0 chr12 4645421 4645550 -116611980 - B3 SINE B2 -66 150 2 3 620 293 238 12 12 chr12 4645673 4645758 -116611772 + L1_Rod LINE L1 5126 5210 -637 3 620 534 222 23 16 chr12 4646913 4647041 -116610489 + ID_B1 SINE B4 87 215 -9 3 620 239 283 16 16 chr12 4649177 4649238 -116608292 + B4A SINE B4 71 131 -161 3 620 242 180 194 90 chr12 4649477 4649544 -116607986 + B4A SINE B4 217 290 -2 3 620 263 204 0 0 chr12 4649547 4649596 -116607934 + A-rich Low_complexity Low_complexity 1 49 0 3 620 397 165 11 21 chr12 4649611 4649624 -116607906 + polypurine Low_complexity Low_complexity 3 14 0 3 620 1098 81 14 0 chr12 4649624 4649772 -116607758 + B1_Mur4 SINE Alu 1 150 0 3 620 397 165 11 21 chr12 4649772 4649851 -116607679 + GA-rich Low_complexity Low_complexity 15 94 0 3 620 180 0 0 0 chr12 4649970 4649990 -116607540 + (GA)n Simple_repeat Simple_repeat 2 21 0 3 620 279 0 0 0 chr12 4649990 4650020 -116607510 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 620 333 0 0 0 chr12 4650020 4650056 -116607474 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 620 355 382 64 56 chr12 4650080 4650471 -116607059 - L2 LINE L2 -2006 1413 1020 3 620 321 263 0 0 chr12 4651125 4651201 -116606329 + ID4_ SINE ID 1 76 -7 3 620 510 326 41 14 chr12 4651265 4651483 -116606047 - Charlie4a DNA MER1_type -255 253 30 3 620 328 267 192 36 chr12 4651569 4651736 -116605794 - L1MEg LINE L1 -3550 2596 2404 3 620 627 215 39 0 chr12 4651751 4651881 -116605649 + B1F SINE Alu 11 145 -4 3 620 286 263 43 50 chr12 4651763 4651903 -116605627 - YREP_Mm Unknown Unknown -1518 294 156 3 620 845 215 27 119 chr12 4651920 4652215 -116605315 + B4 SINE B4 5 272 -20 3 620 387 0 0 0 chr12 4652235 4652278 -116605252 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 620 24 53 0 0 chr12 4652364 4652402 -116605128 + AT_rich Low_complexity Low_complexity 1 38 0 3 620 263 299 147 40 chr12 4652674 4652824 -116604706 - Lx8 LINE L1 -135 7338 7173 3 620 304 284 45 0 chr12 4652854 4652942 -116604588 - L1MEg LINE L1 -4231 2011 1920 3 620 869 202 77 0 chr12 4652944 4653127 -116604403 - B3 SINE B2 -18 198 2 3 620 264 276 122 0 chr12 4653247 4653345 -116604185 - L1MEg LINE L1 -5555 687 578 3 620 975 164 0 71 chr12 4653355 4653552 -116603978 + ORR1D1 LTR MaLR 1 183 -191 3 620 303 273 15 0 chr12 4653552 4653618 -116603912 + C-rich Low_complexity Low_complexity 3 69 0 3 620 385 314 48 35 chr12 4653619 4653638 -116603892 + ORR1D1 LTR MaLR 154 177 -197 3 620 1001 64 23 23 chr12 4653638 4653813 -116603717 + (TCTCC)n Simple_repeat Simple_repeat 2 176 0 3 620 385 314 48 35 chr12 4653813 4653938 -116603592 + ORR1D1 LTR MaLR 178 300 -74 3 620 659 245 6 55 chr12 4654005 4654169 -116603361 - RLTR20D LTR ERVK 0 578 423 3 620 672 252 62 53 chr12 4654171 4654397 -116603133 - RLTR20D LTR ERVK -331 237 10 3 620 401 278 75 87 chr12 4654407 4654580 -116602950 - L1MEg LINE L1 -5781 461 291 3 620 308 309 135 8 chr12 4655061 4655187 -116602343 - MIR SINE MIR -2 260 123 3 620 519 60 0 0 chr12 4655652 4655719 -116601811 + (TTCTC)n Simple_repeat Simple_repeat 4 70 0 3 620 229 415 21 49 chr12 4656085 4656227 -116601303 - MLT1K LTR MaLR -350 245 108 3 620 878 215 82 43 chr12 4656171 4656404 -116601126 + B4 SINE B4 29 270 -22 3 620 333 0 0 0 chr12 4656413 4656450 -116601080 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 620 23 33 0 0 chr12 4656729 4656759 -116600771 + AT_rich Low_complexity Low_complexity 1 30 0 3 620 260 298 28 78 chr12 4656958 4656997 -116600533 + MT2B2 LTR ERVL 123 154 -430 3 620 972 122 7 7 chr12 4656997 4657146 -116600384 + B1_Mur4 SINE Alu 2 150 0 3 620 379 344 60 27 chr12 4657288 4657473 -116600057 + MIRb SINE MIR 14 204 -64 3 620 475 271 65 37 chr12 4658068 4658297 -116599233 + B4 SINE B4 8 286 -6 3 620 207 284 14 0 chr12 4659152 4659226 -116598304 + A-rich Low_complexity Low_complexity 3 77 0 3 620 450 302 99 16 chr12 4660458 4660650 -116596880 - MIRc SINE MIR -59 209 2 3 620 8457 107 14 51 chr12 4660937 4662519 -116595011 + L1Md_F LINE L1 509 2068 -3815 3 620 2718 66 50 5 chr12 4662519 4662900 -116594630 - MTB LTR MaLR 0 400 3 3 620 8457 82 0 20 chr12 4662900 4663348 -116594182 + L1Md_F LINE L1 2069 2491 -3392 3 620 3442 71 0 4 chr12 4663348 4663812 -116593718 + L1_Mus2 LINE L1 5966 6427 -139 3 620 780 168 27 34 chr12 4664480 4664628 -116592902 - B1_Mur2 SINE Alu -1 148 2 3 620 243 0 0 0 chr12 4665501 4665528 -116592002 + (TTAG)n Simple_repeat Simple_repeat 4 30 0 3 620 434 260 29 9 chr12 4666072 4666177 -116591353 + B1F SINE Alu 31 137 -12 3 620 388 319 56 62 chr12 4666350 4666637 -116590893 + B4 SINE B4 3 281 -11 3 620 324 0 0 0 chr12 4666639 4666675 -116590855 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 620 862 149 7 0 chr12 4666683 4666824 -116590706 + B1_Mus2 SINE Alu 5 146 -1 3 620 642 192 133 106 chr12 4667276 4667432 -116590098 + B3A SINE B2 1 161 -34 3 620 375 23 0 0 chr12 4667432 4667476 -116590054 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 620 480 192 133 106 chr12 4667476 4667499 -116590031 + B2_Mm2 SINE B2 162 184 -11 3 620 1580 34 0 51 chr12 4667647 4667864 -116589666 - L1Md_F3 LINE L1 -10 6574 6369 3 620 197 271 79 50 chr12 4669207 4669308 -116588222 - L3 LINE CR1 -2002 2487 2384 3 620 316 295 134 0 chr12 4670062 4670174 -116587356 + PB1 SINE Alu 1 127 0 3 620 23 0 0 0 chr12 4670396 4670419 -116587111 + AT_rich Low_complexity Low_complexity 1 23 0 3 620 594 103 0 0 chr12 4670450 4670537 -116586993 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 620 3886 61 2 4 chr12 4670626 4671107 -116586423 - L1_Mus1 LINE L1 0 6567 6088 4 620 428 100 0 0 chr12 4671107 4671167 -116586363 + L1_Mus1 LINE L1 6017 6076 -491 4 620 435 172 292 22 chr12 4671623 4671760 -116585770 + B3A SINE B2 1 174 -24 4 620 252 0 0 0 chr12 4671772 4671800 -116585730 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 620 316 214 0 35 chr12 4671807 4671865 -116585665 + B1_Mus2 SINE Alu 1 56 -91 4 620 609 188 77 0 chr12 4673319 4673436 -116584094 - Charlie1a DNA MER1_type -825 630 505 4 620 637 221 76 0 chr12 4673575 4673706 -116583824 + ID_B1 SINE B4 82 222 -2 4 620 13933 76 14 2 chr12 4673736 4676325 -116581205 + L1_Mus1 LINE L1 3941 6567 0 4 620 1124 188 14 18 chr12 4676353 4676570 -116580960 + B3 SINE B2 1 216 0 4 620 233 182 380 0 chr12 4676578 4676699 -116580831 - Charlie1a DNA MER1_type -1140 315 149 4 620 227 372 124 0 chr12 4676790 4676927 -116580603 + MIRb SINE MIR 40 193 -75 4 620 358 269 0 3 chr12 4677076 4677162 -116580368 - ID4 SINE ID -60 92 9 4 620 1387 203 127 6 chr12 4677436 4677783 -116579747 + MTD LTR MaLR 31 419 0 4 620 378 0 0 0 chr12 4678654 4678696 -116578834 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 620 788 280 111 27 chr12 4679192 4679489 -116578041 - MER77 LTR ERVL -232 375 54 4 620 1151 68 0 0 chr12 4679876 4680022 -116577508 - B1_Mm SINE Alu -1 146 1 4 620 316 245 92 92 chr12 4680979 4681052 -116576478 + L1M5 LINE L1 3028 3091 -3055 4 620 1185 68 0 0 chr12 4681052 4681199 -116576331 + B1_Mus2 SINE Alu 1 147 0 4 620 316 245 92 92 chr12 4681199 4681278 -116576252 + L1M5 LINE L1 3092 3180 -2966 4 620 409 239 24 57 chr12 4681302 4681426 -116576104 - ID_B1 SINE B4 -19 205 86 4 620 349 145 13 13 chr12 4681455 4681532 -116575998 + CT-rich Low_complexity Low_complexity 1 77 0 4 620 293 222 15 60 chr12 4681556 4681623 -116575907 - ID4_ SINE ID -6 77 14 4 620 213 333 42 31 chr12 4681982 4682078 -116575452 - L2c LINE L2 0 3387 3291 4 620 966 128 7 33 chr12 4685155 4685308 -116572222 + B1_Mur3 SINE Alu 1 149 0 4 620 230 274 0 16 chr12 4687096 4687159 -116570371 - MER5B DNA MER1_type -95 83 22 4 620 586 292 106 56 chr12 4687908 4688285 -116569245 - L1MB7 LINE L1 -17 6167 5772 4 620 477 223 129 47 chr12 4688279 4688472 -116569058 - L1MC LINE L1 -667 5666 5458 4 620 455 270 20 0 chr12 4688529 4688629 -116568901 - PB1D9 SINE Alu -5 115 14 4 620 1117 276 157 30 chr12 4688638 4689042 -116568488 - L1MC LINE L1 -759 5387 4941 4 620 1073 155 163 10 chr12 4689042 4689156 -116568374 + URR1A DNA MER1_type 1 114 -112 4 620 1163 51 0 0 chr12 4689156 4689294 -116568236 + B1_Mus2 SINE Alu 1 138 -9 4 620 672 36 0 0 chr12 4689294 4689377 -116568153 + (GGAAA)n Simple_repeat Simple_repeat 3 85 0 4 620 1073 155 163 10 chr12 4689377 4689457 -116568073 + URR1A DNA MER1_type 115 225 -1 4 620 1117 276 157 30 chr12 4689457 4689721 -116567809 - L1MC LINE L1 -1206 4940 4635 4 620 516 296 119 51 chr12 4691117 4691370 -116566160 + B4A SINE B4 21 290 -2 4 620 395 260 21 0 chr12 4691666 4691762 -116565768 + PB1D10 SINE Alu 15 112 -5 4 620 1276 34 0 7 chr12 4691768 4691917 -116565613 + B1_Mus1 SINE Alu 1 148 0 4 620 189 178 0 0 chr12 4691919 4691964 -116565566 + A-rich Low_complexity Low_complexity 1 45 0 4 620 295 317 0 12 chr12 4692015 4692098 -116565432 + ID4 SINE ID 2 83 0 4 620 764 324 148 20 chr12 4692848 4693545 -116563985 - L2a LINE L2 -51 3375 2585 4 620 4559 108 128 8 chr12 4694027 4694755 -116562775 - Lx4B LINE L1 0 7058 6244 4 620 221 83 28 0 chr12 4694755 4694791 -116562739 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 620 430 116 12 0 chr12 4694802 4694878 -116562652 - B2_Mm2 SINE B2 -112 81 2 4 620 232 297 67 13 chr12 4694960 4695035 -116562495 + RSINE1 SINE B4 85 163 -2 4 620 1845 90 143 0 chr12 4695084 4695363 -116562167 + ORR1A2 LTR MaLR 1 319 -8 4 620 572 204 79 33 chr12 4695367 4695519 -116562011 + RSINE1 SINE B4 5 163 -2 4 620 523 230 94 33 chr12 4695529 4695709 -116561821 - B3A SINE B2 -7 191 1 4 620 1710 26 0 0 chr12 4695749 4695941 -116561589 + B2_Mm1a SINE B2 2 193 0 4 620 486 312 42 7 chr12 4696905 4697047 -116560483 - B1F SINE Alu 0 149 3 4 620 270 81 0 0 chr12 4697118 4697155 -116560375 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 620 384 208 13 0 chr12 4697175 4697252 -116560278 + B4A SINE B4 198 275 -17 4 620 2235 141 16 16 chr12 4697639 4698007 -116559523 - RMER6A LTR ERVK -386 370 3 4 620 231 229 196 27 chr12 4698587 4698699 -116558831 - MER33 DNA MER1_type -28 296 166 4 620 458 243 46 9 chr12 4698735 4698843 -116558687 - PB1D10 SINE Alu -4 113 2 4 620 321 272 70 9 chr12 4698846 4698961 -116558569 - MER33 DNA MER1_type -171 153 32 4 620 2217 200 74 70 chr12 4699989 4700528 -116557002 - RLTR20A LTR ERVK 0 541 1 4 620 227 365 40 0 chr12 4700564 4700638 -116556892 + ID4 SINE ID 3 79 -4 4 620 1391 44 76 22 chr12 4700699 4700884 -116556646 + B2_Mm2 SINE B2 1 195 0 4 620 274 200 0 0 chr12 4701130 4701180 -116556350 + B1_Mus2 SINE Alu 1 50 -97 4 620 716 196 0 70 chr12 4701171 4701314 -116556216 - B1_Mus2 SINE Alu -12 135 3 4 620 214 314 0 0 chr12 4701358 4701409 -116556121 + ID4_ SINE ID 24 74 -9 4 620 1191 86 2 0 chr12 4701665 4702246 -116555284 + (TG)n Simple_repeat Simple_repeat 1 581 0 4 620 423 241 42 92 chr12 4702246 4702365 -116555165 - RSINE1 SINE B4 -41 124 12 4 620 962 24 89 0 chr12 4702383 4702506 -116555024 - B1_Mus1 SINE Alu -13 135 2 4 620 270 0 0 0 chr12 4702516 4702546 -116554984 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 620 651 228 73 25 chr12 4702820 4702999 -116554531 + B3A SINE B2 3 192 -1 4 620 225 264 38 0 chr12 4703567 4703620 -116553910 - Charlie9 DNA MER1_type -2701 56 2 4 620 777 308 5 0 chr12 4704860 4705081 -116552449 - ID_B1 SINE B4 -2 222 1 4 620 2388 55 62 0 chr12 4705858 4706166 -116551364 - ORR1A2 LTR MaLR 0 327 1 4 620 311 309 87 43 chr12 4706741 4706763 -116550767 + B4 SINE B4 64 90 -202 4 620 261 281 54 80 chr12 4706763 4706875 -116550655 + PB1D10 SINE Alu 1 109 -8 4 620 687 231 14 61 chr12 4708450 4708662 -116548868 - B3 SINE B2 -11 205 4 4 620 290 253 11 117 chr12 4709028 4709122 -116548408 - RLTR33 LTR ERVK -149 529 446 4 620 264 196 0 19 chr12 4709301 4709353 -116548177 + B3 SINE B2 43 93 -123 4 620 449 267 8 8 chr12 4709573 4709690 -116547840 + PB1D10 SINE Alu 1 117 0 4 620 411 222 104 50 chr12 4709699 4709860 -116547670 + B3A SINE B2 45 216 0 4 620 352 252 29 10 chr12 4710007 4710111 -116547419 - BC1_Mm scRNA scRNA -45 107 2 4 620 11133 51 2 3 chr12 4710122 4712203 -116545327 - L1Md_F2 LINE L1 0 6582 4502 4 620 230 333 50 36 chr12 4714178 4714318 -116543212 - RMER12B LTR ERVK -1079 325 184 4 620 194 270 66 26 chr12 4717384 4717460 -116540070 - L2b LINE L2 -33 3342 3264 4 620 274 238 102 65 chr12 4717499 4717607 -116539923 + PB1 SINE Alu 12 123 -4 4 620 332 314 69 69 chr12 4717750 4717840 -116539690 + MT2B2 LTR ERVL 64 153 -431 4 620 684 216 50 7 chr12 4717840 4717980 -116539550 + B1_Mur1 SINE Alu 3 148 -1 4 620 351 182 29 43 chr12 4717992 4718061 -116539469 + PB1D10 SINE Alu 46 113 -4 4 620 385 219 158 8 chr12 4718082 4718202 -116539328 + MIRb SINE MIR 120 257 -11 4 621 486 115 210 58 chr12 4723023 4723161 -116534369 + B2_Mm2 SINE B2 36 194 -1 4 621 487 326 36 10 chr12 4723335 4723530 -116534000 - RMER30 DNA MER1_type -1 201 2 4 621 354 241 57 49 chr12 4723606 4723728 -116533802 + Lx8 LINE L1 6901 7023 -450 4 621 522 183 0 0 chr12 4723732 4723825 -116533705 + B1_Mur2 SINE Alu 29 121 -28 4 621 304 123 16 81 chr12 4723833 4723895 -116533635 - HAL1-3A_ME LINE L1 -828 2030 1973 4 621 1023 252 133 41 chr12 4723896 4724309 -116533221 + Lx8 LINE L1 7023 7473 0 4 621 279 104 42 0 chr12 4724669 4724717 -116532813 - PB1 SINE Alu -5 122 73 4 621 787 219 67 0 chr12 4724731 4724895 -116532635 - B3 SINE B2 -9 207 33 4 621 1994 179 146 0 chr12 4726424 4726809 -116530721 + BGLII_B LTR ERVK 1 441 0 4 621 894 254 50 0 chr12 4726895 4727178 -116530352 + BGLII_B LTR ERVK 145 441 0 4 621 12026 245 43 36 chr12 4728454 4730267 -116527263 + MYSERV6-int LTR ERVK 452 2275 -6684 4 621 207 0 0 0 chr12 4730267 4730290 -116527240 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 621 12026 245 43 36 chr12 4730290 4731802 -116525728 + MYSERV6-int LTR ERVK 2276 3799 -5160 4 621 2164 222 63 60 chr12 4731799 4732158 -116525372 + MYSERV6-int LTR ERVK 4002 4363 -4596 4 621 1232 54 0 0 chr12 4732158 4732305 -116525225 - B1_Mm SINE Alu 0 147 1 4 621 2164 222 63 60 chr12 4732305 4732533 -116524997 + MYSERV6-int LTR ERVK 4364 4591 -4368 4 621 3834 204 95 38 chr12 4732529 4734442 -116523088 + MYSERV16_I-int LTR ERVK 115 2693 -149 4 621 7471 58 40 4 chr12 4734495 4735568 -116521962 + L1_Mus2 LINE L1 5461 6566 0 4 621 240 132 0 0 chr12 4735573 4735591 -116521939 + (A)n Simple_repeat Simple_repeat 1 18 0 4 621 1179 28 21 7 chr12 4735591 4735735 -116521795 + B1_Mm SINE Alu 1 146 -1 4 621 240 132 0 0 chr12 4735735 4735769 -116521761 + (A)n Simple_repeat Simple_repeat 1 34 0 4 621 631 229 93 0 chr12 4736108 4736248 -116521282 - B3 SINE B2 -25 191 39 4 621 284 249 185 23 chr12 4736255 4736428 -116521102 + L1M5 LINE L1 4058 4258 -1888 4 621 29 0 0 0 chr12 4736443 4736472 -116521058 + AT_rich Low_complexity Low_complexity 1 29 0 4 621 414 0 0 0 chr12 4736478 4736524 -116521006 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 621 408 226 259 36 chr12 4736856 4737049 -116520481 - Lx8 LINE L1 -1 7472 7237 4 621 276 143 5 0 chr12 4737137 4737192 -116520338 + B1_Mur4 SINE Alu 62 146 -1 5 621 1532 48 0 21 chr12 4737331 4737521 -116520009 + B2_Mm2 SINE B2 1 186 -9 5 621 273 125 0 0 chr12 4737554 4737610 -116519920 + (T)n Simple_repeat Simple_repeat 1 56 0 5 621 21 0 0 0 chr12 4737698 4737719 -116519811 + AT_rich Low_complexity Low_complexity 1 21 0 5 621 307 300 74 53 chr12 4740663 4740906 -116516624 + ORR1E LTR MaLR 1 248 -111 5 621 429 219 0 0 chr12 4740936 4741153 -116516377 + CT-rich Low_complexity Low_complexity 1 217 0 5 621 318 198 0 91 chr12 4741175 4741532 -116515998 + CT-rich Low_complexity Low_complexity 1 324 0 5 621 327 206 77 19 chr12 4742198 4742302 -116515228 + B3A SINE B2 89 198 0 5 621 329 231 530 80 chr12 4742412 4742561 -116514969 + ID_B1 SINE B4 3 218 -6 5 621 290 220 24 121 chr12 4743246 4743260 -116514270 + MT2B LTR ERVL 152 153 -448 5 621 577 227 0 8 chr12 4743260 4743380 -116514150 + B1F2 SINE Alu 1 119 -30 5 621 243 88 0 0 chr12 4743402 4743436 -116514094 + (GGA)n Simple_repeat Simple_repeat 2 35 0 5 621 520 271 32 19 chr12 4743442 4743600 -116513930 + RSINE1 SINE B4 2 161 -4 5 621 1163 72 72 72 chr12 4744117 4744311 -116513219 + B2_Mm2 SINE B2 2 195 0 5 621 23 68 0 0 chr12 4745430 4745474 -116512056 + AT_rich Low_complexity Low_complexity 1 44 0 5 621 507 107 0 0 chr12 4745522 4745597 -116511933 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 621 2866 38 0 3 chr12 4745662 4746003 -116511527 - L1Md_F2 LINE L1 -11 6571 6232 5 621 224 244 48 60 chr12 4746031 4746114 -116511416 - PB1D10 SINE Alu -26 91 10 5 621 465 291 0 0 chr12 4747296 4747413 -116510117 + B1_Mur1 SINE Alu 22 138 -11 5 621 2043 136 3 0 chr12 4747413 4747715 -116509815 + Lx4A LINE L1 6106 6408 -650 5 621 1241 96 22 0 chr12 4748409 4748587 -116508943 + B2_Mm1a SINE B2 2 183 -10 5 621 675 182 138 0 chr12 4749079 4749238 -116508292 + B2_Mm2 SINE B2 1 181 -14 5 621 638 289 6 13 chr12 4749344 4749502 -116508028 + RSINE1 SINE B4 2 158 -7 5 621 227 204 0 20 chr12 4749504 4749554 -116507976 + CT-rich Low_complexity Low_complexity 4 52 0 5 621 21 36 0 0 chr12 4749563 4749591 -116507939 + AT_rich Low_complexity Low_complexity 1 28 0 5 621 306 0 0 0 chr12 4749600 4749634 -116507896 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 5 621 863 153 0 35 chr12 4749634 4749776 -116507754 - B1_Mur4 SINE Alu -13 137 1 5 621 348 261 108 40 chr12 4750606 4750754 -116506776 - L1M4 LINE L1 -393 5791 5634 5 621 364 221 0 14 chr12 4750756 4750825 -116506705 + B1_Mus2 SINE Alu 2 69 -78 5 621 374 301 9 0 chr12 4750895 4751008 -116506522 - L1M4 LINE L1 -549 5635 5522 5 621 4571 112 69 71 chr12 4751164 4752061 -116505469 - RMER19B LTR ERVK -7 895 1 5 621 21 0 0 0 chr12 4752612 4752633 -116504897 + AT_rich Low_complexity Low_complexity 1 21 0 5 621 504 255 95 20 chr12 4753087 4753287 -116504243 + B3 SINE B2 1 215 -1 5 621 772 249 25 15 chr12 4753315 4753511 -116504019 + B3A SINE B2 1 198 0 5 621 603 239 21 28 chr12 4753713 4753855 -116503675 + B1_Mur1 SINE Alu 2 142 -7 5 621 989 197 36 0 chr12 4753882 4754075 -116503455 + B3 SINE B2 7 206 -10 5 621 503 269 103 72 chr12 4754084 4754723 -116502807 + L1MCc LINE L1 1319 2191 -4846 5 621 396 0 0 0 chr12 4755374 4755418 -116502112 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 621 375 60 0 0 chr12 4755491 4755541 -116501989 + (CATA)n Simple_repeat Simple_repeat 2 51 0 5 621 803 274 50 21 chr12 4755541 4755814 -116501716 - B4A SINE B4 -9 283 2 5 621 436 263 0 0 chr12 4756556 4756655 -116500875 + U6 snRNA snRNA 2 100 -7 5 621 267 100 0 0 chr12 4756674 4756714 -116500816 - ID_B1 SINE B4 -11 213 174 5 621 257 175 46 31 chr12 4756714 4756739 -116500791 - B1F SINE Alu -11 138 73 5 621 506 246 181 46 chr12 4756781 4757152 -116500378 - Charlie1a DNA MER1_type -45 1410 990 5 621 365 311 57 8 chr12 4757179 4757302 -116500228 - RSINE1 SINE B4 -28 137 9 5 621 263 28 0 27 chr12 4757374 4757411 -116500119 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 5 621 647 184 63 63 chr12 4757575 4757749 -116499781 - B3A SINE B2 0 198 25 5 621 18254 185 63 7 chr12 4757765 4761601 -116495929 + L1_Mur1 LINE L1 1536 5588 -298 5 621 7582 72 7 29 chr12 4761602 4762620 -116494910 + L1Md_F2 LINE L1 5587 6582 0 5 621 427 183 81 63 chr12 4762664 4762775 -116494755 - PB1D10 SINE Alu 0 117 5 5 621 757 40 10 0 chr12 4763338 4763438 -116494092 - B1_Mus2 SINE Alu 0 147 47 5 621 242 229 40 67 chr12 4763372 4763447 -116494083 - MT2B2 LTR ERVL -320 264 192 5 621 374 247 0 0 chr12 4763611 4763684 -116493846 - ID4 SINE ID -2 81 9 5 621 775 291 93 12 chr12 4763737 4763984 -116493546 - B4 SINE B4 -14 278 12 5 621 424 36 8 15 chr12 4764119 4764185 -116493345 + B1_Mus2 SINE Alu 60 147 0 5 621 493 192 46 37 chr12 4764235 4764343 -116493187 + B1_Mur2 SINE Alu 33 141 -8 5 621 605 305 14 7 chr12 4764380 4764561 -116492969 + B3A SINE B2 19 205 -11 5 621 274 250 34 11 chr12 4764581 4764670 -116492860 + L1MA7 LINE L1 6059 6149 -142 5 621 421 282 60 13 chr12 4764687 4764838 -116492692 + RSINE1 SINE B4 2 159 -6 5 621 231 204 0 0 chr12 4764880 4764924 -116492606 + L1MA7 LINE L1 6170 6213 -78 5 621 333 250 57 9 chr12 4765165 4765270 -116492260 - Charlie1a DNA MER1_type -1272 183 74 5 621 994 9 0 0 chr12 4765352 4765459 -116492071 + U6 snRNA snRNA 1 107 0 5 621 5460 3 0 0 chr12 4765459 4766059 -116491471 + L1Md_A LINE L1 4987 5586 -297 5 621 9160 2 2 0 chr12 4766059 4767053 -116490477 + L1Md_A LINE L1 5587 6582 0 5 621 705 271 149 62 chr12 4767089 4767322 -116490208 + MLT1A0 LTR MaLR 11 272 -93 5 621 1604 176 74 14 chr12 4767322 4767673 -116489857 - ORR1D1 LTR MaLR -2 372 1 5 621 705 271 149 62 chr12 4767673 4767762 -116489768 + MLT1A0 LTR MaLR 273 361 -4 5 621 1215 63 6 0 chr12 4768426 4768584 -116488946 + L1Md_T LINE L1 6421 6579 -3 5 621 560 216 58 22 chr12 4768673 4768810 -116488720 + B1_Mur1 SINE Alu 5 146 -3 5 621 191 58 55 55 chr12 4768994 4769049 -116488481 + (CTAAA)n Simple_repeat Simple_repeat 5 59 0 5 621 243 0 0 0 chr12 4769254 4769281 -116488249 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 621 430 245 40 33 chr12 4769452 4769604 -116487926 + RSINE1 SINE B4 12 164 -1 5 621 23 68 0 0 chr12 4769636 4769680 -116487850 + AT_rich Low_complexity Low_complexity 1 44 0 5 621 542 296 12 19 chr12 4770131 4770293 -116487237 + RSINE1 SINE B4 3 163 -2 5 621 39 32 0 16 chr12 4770312 4770329 -116487201 + AT_rich Low_complexity Low_complexity 1 17 0 5 621 1349 97 16 0 chr12 4770329 4770514 -116487016 + B2_Mm2 SINE B2 1 188 -7 5 621 39 32 0 16 chr12 4770514 4770560 -116486970 + AT_rich Low_complexity Low_complexity 1 46 0 5 621 226 269 89 13 chr12 4770637 4770716 -116486814 - L1M3b LINE L1 -5615 666 582 5 621 297 272 37 0 chr12 4771656 4771737 -116485793 - PB1D9 SINE Alu -5 115 32 5 621 851 161 0 14 chr12 4771946 4772091 -116485439 - B1_Mur1 SINE Alu -2 147 5 5 621 385 252 118 31 chr12 4772128 4772255 -116485275 - B1F1 SINE Alu -7 142 5 5 621 195 184 0 0 chr12 4772386 4772424 -116485106 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 621 192 125 0 0 chr12 4772499 4772531 -116484999 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 621 495 274 105 35 chr12 4772795 4773086 -116484444 + L1MEf LINE L1 461 767 -5327 5 621 210 344 11 11 chr12 4773118 4773212 -116484318 + PB1D10 SINE Alu 22 115 -2 5 621 243 318 45 0 chr12 4773437 4773547 -116483983 + PB1D10 SINE Alu 3 117 0 5 621 478 203 55 52 chr12 4773619 4773762 -116483768 + L1M3 LINE L1 5482 5626 -542 5 621 460 275 99 0 chr12 4773764 4773895 -116483635 + B3A SINE B2 20 163 -35 5 621 1013 225 56 28 chr12 4773907 4774191 -116483339 + L1MB7 LINE L1 5816 6107 -77 5 621 1180 54 7 0 chr12 4774199 4774346 -116483184 + B1_Mus1 SINE Alu 1 148 0 5 621 720 115 0 9 chr12 4774372 4774486 -116483044 + B1_Mm SINE Alu 34 146 -1 5 621 449 296 117 26 chr12 4774508 4774772 -116482758 + L1ME1 LINE L1 5880 6167 -12 5 621 1203 48 0 0 chr12 4774829 4774974 -116482556 - B1_Mus2 SINE Alu -2 145 1 5 621 207 0 0 0 chr12 4777343 4777366 -116480164 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 621 874 213 54 30 chr12 4778229 4778432 -116479098 - B3 SINE B2 -8 208 1 5 621 371 264 119 75 chr12 4778490 4778567 -116478963 - L1MA6 LINE L1 -389 5911 5825 5 621 725 160 0 40 chr12 4778567 4778691 -116478839 - PB1D9 SINE Alu 0 120 2 5 621 371 264 119 75 chr12 4778691 4778908 -116478622 - L1MA6 LINE L1 -476 5824 5604 5 621 473 216 38 49 chr12 4778999 4779161 -116478369 - L1MA6 LINE L1 -670 5627 5442 5 621 848 236 56 14 chr12 4779161 4779376 -116478154 - ID_B1 SINE B4 0 224 1 5 621 410 280 13 104 chr12 4779376 4779460 -116478070 - L1MA6 LINE L1 -430 5453 5385 5 621 384 40 0 0 chr12 4779475 4779525 -116478005 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 621 537 248 158 14 chr12 4779525 4779664 -116477866 - B3 SINE B2 -53 163 5 5 621 763 269 10 10 chr12 4779671 4779866 -116477664 - B3A SINE B2 -3 195 1 5 621 928 164 0 0 chr12 4779922 4780062 -116477468 - B1_Mur4 SINE Alu -10 140 1 5 621 263 318 105 21 chr12 4780062 4780396 -116477134 - L1MA6 LINE L1 -475 5405 5044 5 621 309 333 104 9 chr12 4780445 4780560 -116476970 - MER58A DNA MER1_type -40 184 59 5 621 566 120 0 12 chr12 4780602 4780686 -116476844 + B1_Mur3 SINE Alu 2 84 -65 5 621 1479 91 161 0 chr12 4780686 4780928 -116476602 - RMER6A LTR ERVK 0 756 476 5 621 420 170 72 31 chr12 4780927 4781024 -116476506 - RMER6A LTR ERVK -638 118 18 5 621 507 43 29 0 chr12 4781005 4781074 -116476456 + B1_Mus2 SINE Alu 77 147 0 5 621 305 260 0 0 chr12 4781509 4781586 -116475944 + ID4 SINE ID 2 78 -5 6 621 207 0 0 0 chr12 4781722 4781745 -116475785 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 6 621 714 199 78 44 chr12 4781788 4781993 -116475537 - RMER5 LTR ERV1 -322 212 1 6 621 194 306 0 61 chr12 4783163 4783229 -116474301 + MIRm SINE MIR 207 268 -8 6 621 1108 69 14 0 chr12 4783635 4783780 -116473750 + B1_Mus1 SINE Alu 2 148 0 6 621 273 163 0 0 chr12 4783782 4783831 -116473699 + GA-rich Low_complexity Low_complexity 2 50 0 6 621 238 115 39 0 chr12 4783879 4783931 -116473599 + CT-rich Low_complexity Low_complexity 3 56 0 6 621 278 242 0 31 chr12 4783931 4783995 -116473535 - B1F SINE Alu -5 144 83 6 621 714 225 7 0 chr12 4784084 4784222 -116473308 + B1F2 SINE Alu 3 141 -8 6 621 342 266 147 0 chr12 4785360 4785469 -116472061 - RSINE1 SINE B4 -40 125 1 6 621 430 335 105 8 chr12 4785677 4785915 -116471615 + HERVL40-int LTR ERVL 3856 4116 -1414 6 621 296 278 83 0 chr12 4787095 4787167 -116470363 + HERVL40-int LTR ERVL 4311 4388 -1142 6 621 966 116 69 63 chr12 4787527 4787548 -116469982 - B2_Mm1a SINE B2 -16 177 161 6 621 252 0 0 0 chr12 4787548 4787576 -116469954 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 6 621 966 116 69 63 chr12 4787576 4787729 -116469801 - B2_Mm1a SINE B2 -33 160 2 6 621 3538 197 126 13 chr12 4787770 4788548 -116468982 - RMER1C Other Other 0 1342 477 6 621 1188 122 38 151 chr12 4788549 4788840 -116468690 - RLTR21 LTR ERVK -9 1563 1306 6 621 225 0 0 0 chr12 4790422 4790447 -116467083 + (A)n Simple_repeat Simple_repeat 1 25 0 6 621 273 191 0 0 chr12 4790460 4790502 -116467028 - RMER1C Other Other -1217 125 84 6 621 3497 134 133 18 chr12 4790946 4791554 -116465976 - RLTR33 LTR ERVK 0 678 1 6 621 923 157 0 0 chr12 4791750 4791890 -116465640 - B1_Mus1 SINE Alu 0 148 9 6 621 478 241 62 94 chr12 4791752 4791912 -116465618 - B4 SINE B4 -69 223 69 6 621 941 216 346 38 chr12 4791974 4792326 -116465204 + RLTR20A2 LTR ERVK 1 482 -96 6 621 1405 90 5 0 chr12 4792326 4792514 -116465016 + B2_Mm1a SINE B2 1 189 -4 6 621 222 37 0 0 chr12 4792519 4792546 -116464984 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 621 656 205 0 98 chr12 4792546 4792651 -116464879 + RLTR20A2 LTR ERVK 483 578 0 6 621 1975 166 222 61 chr12 4792653 4792979 -116464551 - RMER19C LTR ERVK 0 611 258 6 621 4885 50 3 2 chr12 4792979 4793565 -116463965 - LTRIS_Mus LTR ERV1 0 587 1 6 621 1975 166 222 61 chr12 4793565 4793764 -116463766 - RMER19C LTR ERVK -354 257 2 6 621 1156 64 0 0 chr12 4794146 4794286 -116463244 + B1_Mus1 SINE Alu 2 141 -7 6 621 338 109 0 0 chr12 4794478 4794542 -116462988 + L1_Mus3 LINE L1 6573 6636 -2 6 621 2259 150 61 30 chr12 4794570 4795031 -116462499 + IAPLTR2_Mm LTR ERVK 1 475 0 6 621 941 128 26 90 chr12 4795098 4795287 -116462243 + IAPEz-int LTR ERVK 17 193 -6288 6 621 246 327 0 0 chr12 4795287 4795342 -116462188 + RLTR27 LTR ERVK 221 275 -34 6 621 3843 55 14 18 chr12 4795342 4795839 -116461691 + IAPEz-int LTR ERVK 168 662 -5819 6 621 2283 65 0 0 chr12 4795839 4796117 -116461413 + IAPEz-int LTR ERVK 1359 1636 -4845 6 621 6022 49 4 29 chr12 4796116 4796879 -116460651 + IAPEz-int LTR ERVK 5736 6479 -2 6 621 831 124 39 0 chr12 4796881 4797010 -116460520 + IAPLTR2_Mm LTR ERVK 1 134 -193 6 621 1189 98 109 0 chr12 4797295 4797469 -116460061 - B2_Mm2 SINE B2 -1 194 2 6 621 2758 134 63 4 chr12 4797804 4798277 -116459253 + RLTR19C LTR ERVK 4 504 -2 6 621 831 129 8 0 chr12 4798619 4798751 -116458779 - B1_Mus2 SINE Alu -9 138 6 6 621 472 182 188 4 chr12 4799068 4799223 -116458307 + B3 SINE B2 2 193 -2 6 621 1061 259 154 27 chr12 4799263 4799623 -116457907 + Charlie2a DNA MER1_type 1425 1837 -1024 6 621 2169 155 132 18 chr12 4799623 4800071 -116457459 + RLTR19 LTR ERVK 1 499 0 6 621 1061 259 154 27 chr12 4800071 4800223 -116457307 + Charlie2a DNA MER1_type 1838 2002 -859 6 621 4414 195 84 57 chr12 4800223 4801443 -116456087 - RMER1A Other Other -29 1037 1 6 621 367 219 206 19 chr12 4801475 4801582 -116455948 - ORR1C2 LTR MaLR -90 294 168 6 621 823 214 54 61 chr12 4801822 4802101 -116455429 + RMER6B LTR ERVK 1 277 -184 6 621 935 112 0 91 chr12 4802101 4802497 -116455033 + (CAGAGA)n Simple_repeat Simple_repeat 1 359 0 6 621 714 227 11 11 chr12 4802464 4802642 -116454888 + (CAGG)n Simple_repeat Simple_repeat 2 179 0 6 621 309 162 77 51 chr12 4802656 4802734 -116454796 + RLTR25B LTR ERVK 430 509 -519 6 621 821 75 0 0 chr12 4802671 4802777 -116454753 + B1_Mus2 SINE Alu 42 147 0 6 621 940 158 38 0 chr12 4802786 4802966 -116454564 + RMER6B LTR ERVK 128 314 -147 6 621 857 137 0 8 chr12 4802966 4803091 -116454439 + B2_Mm2 SINE B2 2 125 -70 6 621 839 205 11 34 chr12 4803221 4803398 -116454132 + RMER6B LTR ERVK 289 461 0 6 621 1050 182 60 74 chr12 4804142 4804510 -116453020 - RLTRETN_Mm LTR ERVK 0 409 1 6 621 446 333 0 0 chr12 4804623 4804743 -116452787 + MTE2b LTR MaLR 9 128 -251 6 621 966 65 0 0 chr12 4804795 4804934 -116452596 + (CA)n Simple_repeat Simple_repeat 2 140 0 6 621 1915 168 68 16 chr12 4805061 4805482 -116452048 - RLTR11A LTR ERVK -2 526 98 6 621 795 90 168 24 chr12 4805482 4805607 -116451923 + B1_Mus2 SINE Alu 5 147 0 6 621 1649 239 48 74 chr12 4805607 4805724 -116451806 - RLTR11A LTR ERVK -430 97 1 6 621 400 300 0 10 chr12 4805755 4805856 -116451674 - PB1D10 SINE Alu -12 105 6 6 621 558 231 23 8 chr12 4806219 4806350 -116451180 + B1_Mur3 SINE Alu 17 149 0 6 621 1765 135 103 3 chr12 4806459 4806749 -116450781 + ORR1A2 LTR MaLR 1 319 -8 6 621 260 235 162 0 chr12 4807221 4807289 -116450241 - PB1 SINE Alu -28 99 21 6 621 478 237 242 7 chr12 4807333 4807486 -116450044 + MER20 DNA MER1_type 30 218 -1 6 621 1898 148 261 47 chr12 4807706 4808173 -116449357 + RLTR6_Mm LTR ERV1 37 603 -51 6 621 64549 35 20 7 chr12 4808174 4808433 -116449097 + RLTR6-int LTR ERV1 1 265 -7513 6 621 184 205 149 46 chr12 4808433 4808520 -116449010 + MIR SINE MIR 17 112 -96 6 621 64549 35 20 7 chr12 4808520 4815851 -116441679 + RLTR6-int LTR ERV1 266 7778 0 6 621 1881 136 272 49 chr12 4815965 4816413 -116441117 + RLTR6_Mm LTR ERV1 37 584 -70 6 621 2824 190 25 8 chr12 4816415 4816929 -116440601 + Lx9 LINE L1 6516 7038 -606 6 621 325 197 53 0 chr12 4817590 4817666 -116439864 + ID2 SINE ID 4 83 0 6 621 488 284 99 17 chr12 4817861 4818033 -116439497 + MER92B LTR ERV1 159 344 -292 6 621 294 200 17 0 chr12 4818136 4818196 -116439334 + RMER15 LTR ERVL 411 471 -104 6 621 294 310 56 65 chr12 4818249 4818356 -116439174 - PB1D10 SINE Alu -2 115 10 6 621 361 279 0 0 chr12 4818382 4818461 -116439069 + PB1D7 SINE Alu 27 105 -15 6 621 251 294 176 0 chr12 4818513 4818581 -116438949 + ID4 SINE ID 2 81 -2 6 621 360 282 26 0 chr12 4818622 4818700 -116438830 + ID SINE ID 10 89 -135 6 621 628 241 75 7 chr12 4818863 4819009 -116438521 + B4A SINE B4 133 288 -4 6 621 187 229 0 0 chr12 4819037 4819072 -116438458 + MER5B DNA MER1_type 21 55 -123 6 621 1291 58 86 6 chr12 4819198 4819372 -116438158 - B2_Mm2 SINE B2 -6 189 2 6 621 296 309 0 12 chr12 4820232 4820314 -116437216 + ID4 SINE ID 3 83 0 6 621 231 88 0 0 chr12 4820907 4820941 -116436589 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 621 910 233 29 38 chr12 4820961 4821117 -116436413 - ID_B1 SINE B4 -6 218 62 6 621 2395 86 9 6 chr12 4821117 4821443 -116436087 - ORR1A2 LTR MaLR 0 327 1 6 621 910 233 29 38 chr12 4821443 4821496 -116436034 - ID SINE ID -163 61 11 6 621 1893 181 85 9 chr12 4821603 4822107 -116435423 - RMER4B LTR ERVK -6 579 1 6 621 472 282 9 0 chr12 4822604 4822714 -116434816 - PB1D10 SINE Alu -1 116 6 6 621 236 323 34 87 chr12 4822625 4822637 -116434893 - B4A SINE B4 -105 187 152 6 621 251 294 16 107 chr12 4822637 4822759 -116434771 - MT2B2 LTR ERVL -343 241 131 6 621 236 323 34 87 chr12 4822759 4822802 -116434728 - B4A SINE B4 -105 151 8 6 621 191 32 0 61 chr12 4822934 4822967 -116434563 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 621 1136 66 0 0 chr12 4822967 4823104 -116434426 - B1_Mm SINE Alu -9 138 2 6 621 277 210 161 0 chr12 4825438 4825500 -116432030 + ID4 SINE ID 8 79 -4 6 621 459 208 104 0 chr12 4825927 4826023 -116431507 - RSINE1 SINE B4 -29 136 31 6 621 1091 82 0 39 chr12 4826132 4826285 -116431245 + B1_Mus2 SINE Alu 1 147 0 6 621 201 74 0 0 chr12 4826285 4826312 -116431218 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 6 621 1138 58 0 0 chr12 4826822 4826961 -116430569 + B1_Mus1 SINE Alu 1 139 -9 6 621 237 188 41 20 chr12 4827839 4827888 -116429642 - ID4_ SINE ID -9 74 25 6 621 221 254 30 60 chr12 4827888 4827906 -116429624 - ID SINE ID -149 75 11 6 621 344 306 99 0 chr12 4827927 4828048 -116429482 + ID_B1 SINE B4 82 214 -10 6 621 200 350 61 24 chr12 4828544 4828626 -116428904 + MIR SINE MIR 45 129 -79 6 621 214 234 281 0 chr12 4828861 4828925 -116428605 + ID4_ SINE ID 2 83 0 6 621 1158 75 0 0 chr12 4829061 4829208 -116428322 + B1_Mus2 SINE Alu 1 147 0 6 621 331 289 49 66 chr12 4829223 4829345 -116428185 + B1F2 SINE Alu 1 120 -29 6 621 1108 73 0 0 chr12 4829550 4829687 -116427843 - B1_Mus2 SINE Alu -9 138 2 6 621 579 29 0 0 chr12 4829723 4829792 -116427738 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 6 621 835 125 52 0 chr12 4829989 4830125 -116427405 - B1_Mm SINE Alu -4 143 1 6 621 661 262 11 23 chr12 4830285 4830461 -116427069 + B3A SINE B2 1 174 -24 6 621 634 135 177 31 chr12 4830469 4830599 -116426931 - B1_Mur4 SINE Alu 0 150 2 6 621 1189 36 0 0 chr12 4830806 4830943 -116426587 - B1_Mm SINE Alu -9 138 2 6 621 271 296 12 24 chr12 4831049 4831132 -116426398 + ID4 SINE ID 2 83 0 6 621 273 266 75 12 chr12 4831286 4831366 -116426164 + RSINE1 SINE B4 71 155 -10 6 621 204 40 0 0 chr12 4831383 4831408 -116426122 + (GGA)n Simple_repeat Simple_repeat 2 26 0 6 621 339 85 0 0 chr12 4831412 4831459 -116426071 + (TGG)n Simple_repeat Simple_repeat 3 49 0 6 621 359 304 43 0 chr12 4831547 4831662 -116425868 + PB1D7 SINE Alu 1 120 0 6 621 233 189 23 139 chr12 4831825 4831911 -116425619 + MT2B2 LTR ERVL 190 265 -319 7 621 601 191 0 87 chr12 4832070 4832196 -116425334 - PB1D9 SINE Alu -3 117 3 7 621 341 167 198 23 chr12 4832220 4832243 -116425287 - B1_Mus2 SINE Alu 0 147 118 7 621 495 0 0 0 chr12 4832243 4832298 -116425232 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 621 341 167 198 23 chr12 4832298 4832360 -116425170 - B1_Mus2 SINE Alu -30 117 47 7 621 331 111 230 27 chr12 4832352 4832373 -116425157 - B1_Mus2 SINE Alu -2 145 118 7 621 459 0 0 0 chr12 4832373 4832424 -116425106 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 621 331 111 230 27 chr12 4832424 4832476 -116425054 - B1_Mus2 SINE Alu -30 117 57 7 621 682 168 114 0 chr12 4832478 4832499 -116425031 - B1_Mus1 SINE Alu -2 146 125 7 621 504 0 0 0 chr12 4832499 4832555 -116424975 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 621 682 168 114 0 chr12 4832555 4832664 -116424866 - B1_Mus1 SINE Alu -24 124 3 7 621 1430 174 110 0 chr12 4834180 4834461 -116423069 + ORR1A2 LTR MaLR 16 327 0 7 621 356 200 34 14 chr12 4834500 4834647 -116422883 + (TG)n Simple_repeat Simple_repeat 1 150 0 7 621 284 209 34 14 chr12 4834661 4834817 -116422713 + (TG)n Simple_repeat Simple_repeat 1 159 0 7 621 335 253 26 20 chr12 4834865 4835177 -116422353 + (TG)n Simple_repeat Simple_repeat 1 314 0 7 621 322 197 16 24 chr12 4835252 4835377 -116422153 + (TG)n Simple_repeat Simple_repeat 2 125 0 7 621 255 285 53 8 chr12 4835391 4835522 -116422008 + (TATATG)n Simple_repeat Simple_repeat 4 140 0 7 621 484 245 19 22 chr12 4835481 4835900 -116421630 + (TG)n Simple_repeat Simple_repeat 1 417 0 7 621 543 244 86 29 chr12 4835916 4836055 -116421475 - RSINE1 SINE B4 -4 161 15 7 621 378 207 9 62 chr12 4836046 4836156 -116421374 - PB1D7 SINE Alu -9 140 43 7 621 1119 56 42 14 chr12 4836264 4836408 -116421122 + B1_Mus1 SINE Alu 1 148 0 7 621 461 190 17 130 chr12 4836420 4836535 -116420995 + PB1D7 SINE Alu 13 114 -6 7 621 1062 101 0 0 chr12 4837060 4837198 -116420332 + B1_Mus2 SINE Alu 5 142 -5 7 621 746 140 5 53 chr12 4837201 4837390 -116420140 + GA-rich Low_complexity Low_complexity 1 180 0 7 621 591 193 109 0 chr12 4837460 4837579 -116419951 - B1_Mus2 SINE Alu -8 139 8 7 621 1031 66 73 0 chr12 4837883 4838019 -116419511 - B1_Mus2 SINE Alu 0 147 2 7 621 427 296 26 61 chr12 4838274 4838389 -116419141 + PB1D10 SINE Alu 1 111 -9 7 621 625 139 19 56 chr12 4839157 4839264 -116418266 + PB1D9 SINE Alu 15 117 -3 7 621 417 272 45 80 chr12 4839264 4839357 -116418173 + B4 SINE B4 100 292 0 7 621 248 211 152 70 chr12 4839741 4839841 -116417689 + PB1D10 SINE Alu 1 107 -10 7 621 411 243 165 0 chr12 4842185 4842288 -116415242 - B1F SINE Alu -29 120 1 7 621 561 291 38 28 chr12 4842890 4843102 -116414428 + L1M5 LINE L1 4819 5032 -1114 7 621 266 336 26 71 chr12 4843128 4843282 -116414248 - YREP_Mm Unknown Unknown -1483 329 183 7 621 578 290 29 0 chr12 4843149 4843287 -116414243 + ID_B1 SINE B4 82 223 -1 7 621 322 269 121 43 chr12 4843361 4843501 -116414029 + L1M5 LINE L1 5056 5206 -940 7 621 545 268 20 4 chr12 4843504 4843644 -116413886 + B3 SINE B2 28 169 -29 7 621 502 225 16 55 chr12 4843606 4843733 -116413797 - ID_B1 SINE B4 -22 202 81 7 621 881 184 93 21 chr12 4844328 4844522 -116413008 + B3 SINE B2 8 215 -1 7 621 916 96 73 0 chr12 4845079 4845215 -116412315 + B1_Mur4 SINE Alu 5 150 0 7 621 220 281 18 0 chr12 4845568 4845625 -116411905 - L2a LINE L2 -64 3362 3305 7 621 286 306 50 30 chr12 4845677 4845778 -116411752 - B4A SINE B4 -185 107 5 7 621 311 284 162 30 chr12 4845779 4845946 -116411584 - L2a LINE L2 -113 3313 3125 7 621 401 321 180 55 chr12 4846088 4846615 -116410915 - L2a LINE L2 -547 2872 2280 7 621 210 167 48 0 chr12 4846747 4846789 -116410741 + ID2 SINE ID 8 51 -32 7 621 194 269 51 31 chr12 4846854 4846919 -116410611 + L2a LINE L2 3296 3423 -3 7 621 202 306 0 0 chr12 4848580 4848636 -116408894 - L2b LINE L2 0 3387 3326 7 622 1026 40 0 0 chr12 4849811 4849937 -116407593 - B1_Mus2 SINE Alu -21 126 1 7 622 261 0 0 0 chr12 4850741 4850770 -116406760 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 622 374 308 0 33 chr12 4850809 4850960 -116406570 - RSINE1 SINE B4 -15 150 5 7 622 565 267 82 0 chr12 4851153 4851299 -116406231 + ID_B1 SINE B4 13 170 -54 7 622 280 305 37 0 chr12 4851235 4851317 -116406213 + PB1D10 SINE Alu 26 110 -7 7 622 742 182 71 0 chr12 4851642 4851768 -116405762 - B1_Mur4 SINE Alu -15 135 1 7 622 185 94 0 30 chr12 4851852 4851885 -116405645 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 7 622 913 82 11 59 chr12 4851885 4852064 -116405466 - B2_Mm2 SINE B2 -38 155 2 7 622 1234 27 7 0 chr12 4852076 4852222 -116405308 - B1_Mus2 SINE Alu 0 147 1 7 622 348 350 0 0 chr12 4852245 4852342 -116405188 - RSINE1 SINE B4 -15 150 54 7 622 288 0 0 0 chr12 4852356 4852388 -116405142 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 7 622 1288 63 0 0 chr12 4852388 4852547 -116404983 - B2_Mm1a SINE B2 -33 160 2 7 622 1156 96 11 0 chr12 4852685 4852862 -116404668 + (TAGG)n Simple_repeat Simple_repeat 1 179 0 7 622 304 233 27 0 chr12 4853010 4853083 -116404447 - ID4_ SINE ID -4 79 5 7 622 801 122 44 37 chr12 4853187 4853323 -116404207 + B1_Mur4 SINE Alu 3 139 -11 7 622 538 285 16 0 chr12 4853366 4853489 -116404041 + RSINE1 SINE B4 3 127 -38 7 622 681 82 0 0 chr12 4853489 4853586 -116403944 + (TG)n Simple_repeat Simple_repeat 2 98 0 7 622 1200 42 0 0 chr12 4853587 4853730 -116403800 - B1_Mus1 SINE Alu -1 147 5 7 622 3487 187 62 32 chr12 4853730 4854443 -116403087 - RLTR25A LTR ERVK -369 734 1 7 622 271 303 13 0 chr12 4854499 4854575 -116402955 + BC1_Mm scRNA scRNA 8 84 -68 7 622 25 0 0 0 chr12 4854643 4854668 -116402862 + AT_rich Low_complexity Low_complexity 1 25 0 7 622 1528 68 5 5 chr12 4854750 4854943 -116402587 - B2_Mm1t SINE B2 0 193 1 7 622 1308 52 84 22 chr12 4854948 4855126 -116402404 - B2_Mm2 SINE B2 -6 189 1 7 622 249 257 71 0 chr12 4855358 4855428 -116402102 - PB1 SINE Alu -30 97 23 7 622 738 146 85 15 chr12 4855452 4855615 -116401915 - URR1A DNA MER1_type -32 194 5 7 622 520 293 60 45 chr12 4855731 4855931 -116401599 - ID_B1 SINE B4 -16 208 6 7 622 765 191 0 64 chr12 4856153 4856293 -116401237 + B1_Mur2 SINE Alu 8 138 -11 7 622 658 98 0 64 chr12 4856302 4856383 -116401147 + B2_Mm2 SINE B2 81 161 -34 7 622 405 0 0 0 chr12 4856383 4856428 -116401102 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 7 622 658 98 0 64 chr12 4856428 4856455 -116401075 + B2_Mm2 SINE B2 162 182 -13 7 622 350 214 41 0 chr12 4856597 4856681 -116400849 + ID4 SINE ID 1 96 -56 7 622 632 203 30 23 chr12 4856771 4856902 -116400628 - B1_Mur3 SINE Alu -13 136 5 7 622 405 0 0 0 chr12 4859041 4859086 -116398444 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 622 289 197 227 0 chr12 4859194 4859260 -116398270 - ID_B1 SINE B4 -1 223 143 7 622 228 266 200 12 chr12 4859336 4859416 -116398114 - B4A SINE B4 -79 213 119 7 622 542 278 16 0 chr12 4859479 4859605 -116397925 - ID_B1 SINE B4 -80 144 17 7 622 295 111 0 60 chr12 4859665 4859732 -116397798 + B2_Mm2 SINE B2 131 193 -2 7 622 829 137 0 22 chr12 4859778 4859912 -116397618 + B1_Mur1 SINE Alu 19 149 0 7 622 675 67 0 0 chr12 4859933 4860022 -116397508 + (GGGA)n Simple_repeat Simple_repeat 2 90 0 7 622 501 235 228 0 chr12 4860045 4860181 -116397349 + B3 SINE B2 38 204 -12 7 622 1491 38 5 31 chr12 4860244 4860437 -116397093 - B2_Mm2 SINE B2 -6 189 2 7 622 1238 48 0 0 chr12 4860495 4860642 -116396888 + B1_Mus2 SINE Alu 1 147 0 7 622 447 262 42 108 chr12 4860714 4860771 -116396759 - RSINE1 SINE B4 -6 159 106 7 622 588 254 22 0 chr12 4860771 4860909 -116396621 + B1_Mur1 SINE Alu 1 141 -8 7 622 447 262 42 108 chr12 4860909 4861018 -116396512 - RSINE1 SINE B4 -60 105 4 7 622 1767 133 44 35 chr12 4861037 4861356 -116396174 - MTC LTR MaLR -17 404 83 7 622 216 0 0 0 chr12 4861367 4861391 -116396139 + (TA)n Simple_repeat Simple_repeat 1 24 0 7 622 1268 85 18 26 chr12 4861391 4861610 -116395920 - B2_Mm2 SINE B2 -2 214 2 7 622 597 168 0 0 chr12 4861612 4861707 -116395823 - MTC LTR MaLR -326 95 1 7 622 589 189 15 52 chr12 4861871 4862005 -116395525 - B1_Mur1 SINE Alu -8 141 13 7 622 189 0 0 0 chr12 4862567 4862588 -116394942 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 7 622 543 154 148 37 chr12 4862593 4862701 -116394829 - B1_Mur4 SINE Alu -21 129 10 7 622 240 309 80 30 chr12 4862622 4862722 -116394808 - MT2B LTR ERVL -345 256 152 7 622 277 129 0 28 chr12 4862856 4862920 -116394610 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 7 622 1235 34 7 0 chr12 4862920 4863066 -116394464 - B1_Mus2 SINE Alu 0 147 1 7 622 277 129 0 28 chr12 4863066 4863073 -116394457 + (TTTA)n Simple_repeat Simple_repeat 2 8 0 7 622 662 241 128 5 chr12 4863097 4863285 -116394245 - B3 SINE B2 -4 212 2 7 622 216 0 0 0 chr12 4863403 4863427 -116394103 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 622 253 114 0 0 chr12 4863474 4863509 -116394021 + B1_Mus1 SINE Alu 1 35 -113 7 622 1163 112 67 0 chr12 4863602 4863780 -116393750 + B2_Mm2 SINE B2 1 190 -5 7 622 691 134 185 51 chr12 4863781 4863938 -116393592 - B2_Mm2 SINE B2 -17 178 1 7 622 189 0 0 0 chr12 4865178 4865199 -116392331 + (T)n Simple_repeat Simple_repeat 1 21 0 7 622 1137 42 0 0 chr12 4865199 4865341 -116392189 - B1_Mus1 SINE Alu 0 148 7 7 622 1723 21 0 0 chr12 4865879 4866071 -116391459 + B2_Mm1a SINE B2 1 192 -1 7 622 562 135 83 0 chr12 4866993 4867089 -116390441 + B1_Mur4 SINE Alu 2 105 -45 7 622 257 203 0 28 chr12 4867148 4867219 -116390311 + (TCTCTG)n Simple_repeat Simple_repeat 3 71 0 7 622 810 188 0 0 chr12 4867462 4867590 -116389940 - B3 SINE B2 -87 129 2 8 622 368 250 19 68 chr12 4867625 4867728 -116389802 - B4A SINE B4 -72 220 123 8 622 392 324 20 0 chr12 4868290 4868392 -116389138 + PB1D10 SINE Alu 14 117 0 8 622 647 304 156 0 chr12 4868787 4869049 -116388481 - MTE2b LTR MaLR -11 368 71 8 622 315 245 20 78 chr12 4869159 4869230 -116388300 + PB1 SINE Alu 31 101 -26 8 622 1311 67 67 0 chr12 4869230 4869409 -116388121 - B2_Mm1t SINE B2 -1 192 2 8 622 315 245 20 78 chr12 4869409 4869439 -116388091 + PB1 SINE Alu 102 126 -1 8 622 440 232 59 20 chr12 4869469 4869570 -116387960 + PB1D10 SINE Alu 12 116 -1 8 622 715 247 17 35 chr12 4869584 4869756 -116387774 + B3A SINE B2 30 198 0 8 622 225 292 29 143 chr12 4870129 4870269 -116387261 + YREP_Mm Unknown Unknown 170 293 -1519 8 622 632 239 7 21 chr12 4870147 4870292 -116387238 - ID_B1 SINE B4 0 224 82 8 622 194 333 0 0 chr12 4871237 4871297 -116386233 - L2b LINE L2 -11 3364 3305 8 622 495 0 0 0 chr12 4871838 4871893 -116385637 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 622 360 318 108 0 chr12 4873958 4874087 -116383443 + ID_B1 SINE B4 67 209 -15 8 622 417 20 0 0 chr12 4874309 4874359 -116383171 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 622 211 323 35 84 chr12 4875040 4875182 -116382348 - ID_B1 SINE B4 -89 135 1 8 622 638 269 35 0 chr12 4875259 4875404 -116382126 - ID_B1 SINE B4 -6 218 69 8 622 194 150 25 0 chr12 4875509 4875549 -116381981 + CT-rich Low_complexity Low_complexity 1 41 0 8 622 245 274 40 40 chr12 4876652 4876723 -116380807 + ID4 SINE ID 2 72 -11 8 622 730 149 79 86 chr12 4876723 4876888 -116380642 + URR1B DNA MER1_type 1 198 -27 8 622 1142 88 0 0 chr12 4876888 4877035 -116380495 + B1_Mus1 SINE Alu 2 148 0 8 622 730 147 53 88 chr12 4877035 4877070 -116380460 + URR1B DNA MER1_type 199 225 0 8 622 817 145 48 0 chr12 4877683 4877828 -116379702 + URR1A DNA MER1_type 70 221 -5 8 622 352 259 216 27 chr12 4877830 4877941 -116379589 - ID_B1 SINE B4 -11 213 82 8 622 228 333 113 9 chr12 4878601 4878707 -116378823 + MIRc SINE MIR 87 203 -65 8 622 496 282 121 0 chr12 4878760 4878884 -116378646 - RSINE1 SINE B4 -14 151 13 8 622 226 252 96 35 chr12 4879141 4879256 -116378274 + L2 LINE L2 2481 2602 -817 8 622 242 319 189 13 chr12 4879263 4879422 -116378108 + L2 LINE L2 2727 2913 -506 8 622 261 147 0 83 chr12 4880531 4880595 -116376935 - AluF_3 SINE Alu -108 203 152 8 622 212 281 0 81 chr12 4880542 4880604 -116376926 - B4A SINE B4 -143 149 93 8 622 1178 75 0 0 chr12 4881829 4881976 -116375554 - B1_Mus2 SINE Alu 0 147 1 8 622 3499 109 104 116 chr12 4882099 4882823 -116374707 + RLTR19B LTR ERVK 1 715 0 8 622 572 201 58 36 chr12 4883219 4883358 -116374172 - B1_Mus1 SINE Alu -5 143 2 8 622 488 240 29 9 chr12 4885416 4885521 -116372009 - PB1D7 SINE Alu -12 108 2 8 622 1151 82 0 0 chr12 4885691 4885837 -116371693 - B1_Mus2 SINE Alu 0 147 2 8 622 869 235 14 52 chr12 4885934 4886112 -116371418 - B3 SINE B2 -3 213 42 8 622 262 45 22 22 chr12 4886112 4886157 -116371373 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 8 622 934 47 87 0 chr12 4886157 4886284 -116371246 - B1_Mus1 SINE Alu -9 139 2 8 622 869 235 14 52 chr12 4886284 4886315 -116371215 - B3 SINE B2 -175 41 12 8 622 302 253 132 0 chr12 4886347 4886438 -116371092 - PB1 SINE Alu -11 116 14 8 622 715 150 26 73 chr12 4886494 4886645 -116370885 - B1_Mus1 SINE Alu -4 144 1 8 622 315 238 24 59 chr12 4886692 4886777 -116370753 - ID4_ SINE ID 0 83 2 8 622 1085 66 0 0 chr12 4887676 4887812 -116369718 + B1_Mus2 SINE Alu 12 147 0 8 622 469 224 16 87 chr12 4887913 4888040 -116369490 - ID_B1 SINE B4 -105 119 2 8 622 719 186 159 6 chr12 4888188 4888345 -116369185 + B2_Mm2 SINE B2 1 181 -14 8 622 228 198 65 65 chr12 4888552 4888644 -116368886 - RSINE1 SINE B4 -71 94 3 8 622 488 184 0 13 chr12 4888712 4888789 -116368741 - ID4 SINE ID -3 80 5 8 622 272 204 41 0 chr12 4888789 4888838 -116368692 - ID4_ SINE ID -30 53 3 8 622 265 231 0 30 chr12 4888844 4888911 -116368619 - Kanga1b DNA Tc2 -99 680 616 8 622 661 197 29 14 chr12 4889000 4889139 -116368391 - B1_Mur1 SINE Alu 0 149 9 8 622 296 332 176 17 chr12 4889526 4889915 -116367615 - RLTR26 LTR ERVK -54 573 95 8 622 1456 91 21 0 chr12 4890048 4890234 -116367296 + B2_Mm2 SINE B2 1 190 -5 8 622 376 215 0 88 chr12 4890360 4890462 -116367068 + MT2B LTR ERVL 172 264 -337 8 622 874 41 23 62 chr12 4890375 4890505 -116367025 + B1_Mus1 SINE Alu 24 148 0 8 622 1223 93 131 6 chr12 4891547 4891730 -116365800 + L1Md_F2 LINE L1 6373 6578 -4 8 622 591 234 73 0 chr12 4891754 4891891 -116365639 + ID_B1 SINE B4 12 158 -66 8 622 314 208 122 20 chr12 4891825 4891917 -116365613 + PB1D10 SINE Alu 10 112 -5 8 622 192 40 0 0 chr12 4891917 4891942 -116365588 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 8 622 2034 168 23 0 chr12 4891990 4892341 -116365189 + RLTR15 LTR ERVK 1 359 0 8 622 230 349 0 16 chr12 4892359 4892423 -116365107 + tRNA-Ala-GCG tRNA tRNA 4 66 -9 8 622 492 266 47 8 chr12 4892774 4892903 -116364627 + ID_B1 SINE B4 87 220 -4 8 622 1264 62 0 0 chr12 4892909 4893055 -116364475 + B1_Mm SINE Alu 2 147 0 8 622 485 255 9 29 chr12 4893073 4893178 -116364352 + RSINE1 SINE B4 25 127 -38 8 622 288 70 0 0 chr12 4893197 4893240 -116364290 + (TATG)n Simple_repeat Simple_repeat 3 45 0 8 622 475 277 132 25 chr12 4893308 4893357 -116364173 - B4A SINE B4 -12 280 172 8 622 242 311 184 24 chr12 4893357 4893402 -116364128 - B1F2 SINE Alu 0 149 94 8 622 513 0 0 0 chr12 4893402 4893459 -116364071 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 8 622 242 311 184 24 chr12 4893459 4893538 -116363992 - B1F2 SINE Alu -56 93 5 8 622 475 279 204 24 chr12 4893538 4893593 -116363937 - B4A SINE B4 -110 182 3 8 622 1465 56 56 0 chr12 4893617 4893796 -116363734 + B2_Mm2 SINE B2 2 190 -5 8 622 577 282 0 24 chr12 4893836 4893963 -116363567 - RSINE1 SINE B4 -29 136 13 8 622 343 252 83 9 chr12 4894078 4894186 -116363344 - PB1D10 SINE Alu -1 116 1 8 622 431 289 104 0 chr12 4894194 4894329 -116363201 - B1F SINE Alu 0 149 1 8 622 938 121 20 34 chr12 4894456 4894602 -116362928 - B1_Mus1 SINE Alu -3 145 2 8 622 808 133 93 29 chr12 4894673 4894812 -116362718 - B1_Mur4 SINE Alu -2 148 1 8 622 234 261 15 44 chr12 4894913 4894981 -116362549 + ID4 SINE ID 2 67 -16 8 622 4838 165 42 11 chr12 4895041 4895894 -116361636 + Lx4B LINE L1 6169 7048 -10 8 622 574 296 159 2 chr12 4895899 4896219 -116361311 + L1M4 LINE L1 5315 5686 -498 8 622 633 272 57 0 chr12 4896225 4896383 -116361147 + B3A SINE B2 2 168 -30 8 622 455 299 51 0 chr12 4896439 4896556 -116360974 + ID_B1 SINE B4 86 208 -16 8 622 321 328 22 0 chr12 4896592 4896726 -116360804 + ID4 SINE ID 6 142 -10 8 622 253 288 0 12 chr12 4896727 4896808 -116360722 + L1M4 LINE L1 5693 5772 -412 8 622 481 242 10 0 chr12 4896808 4896907 -116360623 - PB1D9 SINE Alu -11 109 10 8 622 630 191 408 0 chr12 4897090 4897237 -116360293 + B3 SINE B2 3 209 -7 8 622 1286 48 0 0 chr12 4897375 4897520 -116360010 + B1_Mus1 SINE Alu 4 148 0 8 622 241 123 31 0 chr12 4897520 4897585 -116359945 + (CAAA)n Simple_repeat Simple_repeat 3 69 0 8 622 234 241 17 17 chr12 4897608 4897667 -116359863 + GA-rich Low_complexity Low_complexity 2 60 0 8 622 282 235 16 49 chr12 4897770 4897910 -116359620 - B3A SINE B2 -7 191 4 8 622 360 0 0 0 chr12 4897923 4897963 -116359567 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 622 1052 185 65 5 chr12 4898321 4898522 -116359008 - B3 SINE B2 -3 213 1 8 622 22 35 0 0 chr12 4898566 4898595 -116358935 + AT_rich Low_complexity Low_complexity 1 29 0 8 622 261 262 43 93 chr12 4898702 4898841 -116358689 + MT2B2 LTR ERVL 133 264 -320 8 622 576 226 42 42 chr12 4898740 4898883 -116358647 + B1F SINE Alu 6 148 -1 8 622 444 236 11 11 chr12 4898889 4898979 -116358551 + B3 SINE B2 2 91 -125 8 622 238 268 41 27 chr12 4899793 4899866 -116357664 - RSINE1 SINE B4 -72 93 20 8 622 393 237 102 10 chr12 4899883 4899981 -116357549 - RSINE1 SINE B4 -57 108 2 8 622 536 241 282 17 chr12 4900013 4900190 -116357340 + ID_B1 SINE B4 1 224 0 8 622 298 304 201 33 chr12 4900217 4900516 -116357014 - Charlie1a DNA MER1_type -268 1187 839 8 622 508 285 44 0 chr12 4900513 4900650 -116356880 - B1F1 SINE Alu 0 149 7 8 622 679 279 62 78 chr12 4900644 4900895 -116356635 - Charlie1a DNA MER1_type -603 852 598 8 622 1438 73 5 30 chr12 4900895 4901093 -116356437 + B2_Mm2 SINE B2 2 194 -1 8 622 679 279 62 78 chr12 4901093 4901163 -116356367 - Charlie1a DNA MER1_type -858 597 536 8 622 574 279 38 0 chr12 4901163 4901321 -116356209 - Charlie1a DNA MER1_type -1243 212 49 8 622 206 118 0 0 chr12 4901487 4901521 -116356009 + (A)n Simple_repeat Simple_repeat 1 34 0 8 622 1224 97 15 9 chr12 4901655 4901851 -116355679 + L1_Mm LINE L1 5415 5615 -718 8 622 8479 40 20 1 chr12 4901851 4902827 -116354703 + L1Md_F2 LINE L1 5587 6581 -1 8 622 22 0 0 0 chr12 4902994 4903016 -116354514 + AT_rich Low_complexity Low_complexity 1 22 0 8 622 1171 28 7 46 chr12 4903016 4903167 -116354363 + B1_Mus1 SINE Alu 4 148 0 8 622 261 0 0 0 chr12 4903167 4903196 -116354334 + (A)n Simple_repeat Simple_repeat 1 29 0 8 622 402 290 71 64 chr12 4903257 4903397 -116354133 - RSINE1 SINE B4 0 165 25 8 622 406 258 242 38 chr12 4903434 4903591 -116353939 + B3A SINE B2 1 189 -9 9 622 651 181 26 0 chr12 4903733 4903849 -116353681 - ID_B1 SINE B4 -1 223 105 9 622 283 306 0 14 chr12 4903850 4903923 -116353607 - ID4_ SINE ID -9 74 3 9 622 225 200 0 20 chr12 4903970 4904021 -116353509 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 622 597 202 248 15 chr12 4904120 4904326 -116353204 - RLTR25A LTR ERVK 0 1103 850 9 622 1034 53 2 11 chr12 4904418 4904563 -116352967 + B1_Mus1 SINE Alu 8 149 0 9 622 180 97 0 0 chr12 4904563 4904594 -116352936 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 9 622 2554 194 133 43 chr12 4904647 4904791 -116352739 - RLTR25B LTR ERVK -149 954 821 9 622 797 52 244 34 chr12 4904791 4904910 -116352620 - B1_Mus2 SINE Alu 0 147 4 9 622 3184 190 86 20 chr12 4904910 4905608 -116351922 - RLTR25B LTR ERVK -284 744 1 9 622 692 232 20 27 chr12 4905677 4905823 -116351707 - ID_B1 SINE B4 0 224 80 9 622 28 48 0 0 chr12 4905828 4905870 -116351660 + AT_rich Low_complexity Low_complexity 1 42 0 9 622 261 0 0 0 chr12 4906056 4906085 -116351445 + (T)n Simple_repeat Simple_repeat 1 29 0 9 622 1284 54 0 0 chr12 4906085 4906232 -116351298 - B1_Mus2 SINE Alu 0 147 1 9 622 1355 91 26 11 chr12 4906360 4906549 -116350981 + B2_Mm2 SINE B2 2 193 -2 9 622 277 305 172 38 chr12 4906643 4906800 -116350730 + ID_B1 SINE B4 2 179 -45 9 622 249 192 0 71 chr12 4906764 4906820 -116350710 + B1_Mur1 SINE Alu 96 147 -2 9 622 298 311 66 16 chr12 4906919 4907040 -116350490 + B1F1 SINE Alu 17 143 -6 9 622 392 283 19 9 chr12 4906936 4907043 -116350487 + ID_B1 SINE B4 114 221 -3 9 622 380 202 270 0 chr12 4907100 4907189 -116350341 + B1_Mus2 SINE Alu 1 113 -34 9 622 252 228 0 50 chr12 4907136 4907196 -116350334 + RLTR25B LTR ERVK 460 516 -512 9 622 1169 228 194 52 chr12 4907212 4907708 -116349822 + RLTR12A LTR ERVK 3 568 0 9 622 485 67 0 8 chr12 4907717 4907790 -116349740 + B1_Mm SINE Alu 53 147 0 9 622 207 0 0 0 chr12 4907846 4907869 -116349661 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 9 622 476 313 65 26 chr12 4907904 4908058 -116349472 + RSINE1 SINE B4 2 161 -4 9 622 47 28 0 14 chr12 4908120 4908142 -116349388 + AT_rich Low_complexity Low_complexity 1 22 0 9 622 1055 101 21 7 chr12 4908142 4908282 -116349248 + B1_Mus2 SINE Alu 1 142 -5 9 622 47 28 0 14 chr12 4908282 4908331 -116349199 + AT_rich Low_complexity Low_complexity 1 49 0 9 622 191 61 30 0 chr12 4908331 4908364 -116349166 + (TA)n Simple_repeat Simple_repeat 2 35 0 9 622 398 306 72 7 chr12 4908374 4908512 -116349018 + B1F SINE Alu 3 149 0 9 622 252 257 186 0 chr12 4908512 4908582 -116348948 + ID4_ SINE ID 1 83 0 9 622 1187 50 7 14 chr12 4908723 4908859 -116348671 + B1_Mus1 SINE Alu 2 138 -10 9 622 203 0 0 36 chr12 4908859 4908887 -116348643 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 9 622 198 71 0 0 chr12 4909166 4909194 -116348336 + (CAGAA)n Simple_repeat Simple_repeat 4 31 0 9 622 426 285 60 30 chr12 4909202 4909336 -116348194 + ID_B1 SINE B4 86 223 -1 9 622 452 210 29 20 chr12 4909340 4909442 -116348088 + PB1D9 SINE Alu 17 119 -1 9 622 838 255 47 21 chr12 4909455 4909647 -116347883 + B3 SINE B2 3 199 -17 9 622 1018 277 23 56 chr12 4909919 4910221 -116347309 - B4A SINE B4 0 292 1 9 622 1540 70 16 5 chr12 4910530 4910718 -116346812 + B2_Mm2 SINE B2 2 191 -4 9 622 206 313 121 58 chr12 4911473 4911646 -116345884 + L2c LINE L2 2947 3130 -257 9 622 1300 61 0 0 chr12 4911870 4912017 -116345513 - B1_Mm SINE Alu 0 147 1 9 622 499 226 78 0 chr12 4912017 4912118 -116345412 - PB1D9 SINE Alu -10 110 1 9 622 270 230 92 58 chr12 4912198 4912318 -116345212 + Lx8 LINE L1 7058 7181 -292 9 622 364 322 65 69 chr12 4912466 4912683 -116344847 + RMER15 LTR ERVL 347 562 -13 9 622 222 116 0 0 chr12 4912750 4912793 -116344737 + (A)n Simple_repeat Simple_repeat 1 43 0 9 622 725 257 113 36 chr12 4912856 4913050 -116344480 + B3 SINE B2 1 209 -7 9 622 1252 62 0 0 chr12 4913066 4913210 -116344320 + B1_Mus1 SINE Alu 5 148 0 9 622 252 0 0 0 chr12 4913948 4913976 -116343554 + (CCGGG)n Simple_repeat Simple_repeat 3 30 0 9 622 26 30 0 0 chr12 4914306 4914339 -116343191 + GC_rich Low_complexity Low_complexity 1 33 0 9 622 290 278 72 27 chr12 4914789 4914900 -116342630 + MER92B LTR ERV1 11 126 -428 9 622 429 125 28 0 chr12 4914934 4915006 -116342524 - PB1D9 SINE Alu -11 109 36 9 622 631 323 48 61 chr12 4915015 4915394 -116342136 + MER92B LTR ERV1 117 490 -146 9 622 630 171 126 44 chr12 4915509 4915523 -116342007 - B1_Mur2 SINE Alu -1 148 140 9 622 228 35 0 0 chr12 4915523 4915552 -116341978 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 9 622 630 171 126 44 chr12 4915552 4915672 -116341858 - B1_Mur2 SINE Alu -10 139 3 9 622 815 151 24 0 chr12 4915898 4916024 -116341506 + B1_Mus2 SINE Alu 5 133 -14 9 622 207 0 0 0 chr12 4916026 4916049 -116341481 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 622 1052 106 35 0 chr12 4916100 4916242 -116341288 - B1_Mus1 SINE Alu 0 148 2 9 622 420 20 0 0 chr12 4916402 4916451 -116341079 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 9 622 1090 65 65 0 chr12 4916451 4916589 -116340941 - B1_Mus2 SINE Alu 0 147 1 9 622 25 65 0 0 chr12 4916656 4916702 -116340828 + AT_rich Low_complexity Low_complexity 1 46 0 9 622 180 0 0 0 chr12 4916775 4916795 -116340735 + (TA)n Simple_repeat Simple_repeat 1 20 0 9 622 352 239 98 0 chr12 4917063 4917155 -116340375 + PB1D10 SINE Alu 1 101 -16 9 622 2531 87 182 0 chr12 4917155 4917594 -116339936 - RLTR47_MM LTR ERV1 -13 519 1 9 622 836 161 0 28 chr12 4917813 4917954 -116339576 + B1_Mus1 SINE Alu 11 147 -1 9 622 1152 92 177 0 chr12 4918104 4918268 -116339262 - B2_Mm1t SINE B2 0 193 1 9 622 568 279 66 30 chr12 4918290 4918456 -116339074 - B3A SINE B2 -26 172 1 9 622 236 229 0 0 chr12 4918463 4918511 -116339019 - ID_B1 SINE B4 0 224 177 9 622 265 164 109 0 chr12 4918470 4918525 -116339005 - PB1D7 SINE Alu -7 113 53 9 622 812 255 170 42 chr12 4918559 4918916 -116338614 - MTD LTR MaLR -5 414 6 9 622 1191 62 14 0 chr12 4918966 4919111 -116338419 - B1_Mus2 SINE Alu 0 147 1 9 622 340 240 45 90 chr12 4919119 4919179 -116338351 - L1M4 LINE L1 -2691 3455 3397 9 622 1402 86 27 5 chr12 4919179 4919366 -116338164 + B2_Mm2 SINE B2 4 194 -1 9 622 340 240 45 90 chr12 4919366 4919438 -116338092 - L1M4 LINE L1 -2750 3396 3329 9 622 282 281 8 39 chr12 4920001 4920124 -116337406 - MTEb LTR MaLR -26 353 239 9 622 416 315 9 0 chr12 4920355 4920463 -116337067 + PB1D10 SINE Alu 3 111 -6 9 622 291 113 48 0 chr12 4920482 4920544 -116336986 + CT-rich Low_complexity Low_complexity 2 66 0 9 622 929 173 0 0 chr12 4920549 4920688 -116336842 - B1_Mus1 SINE Alu -5 143 5 9 622 189 0 0 0 chr12 4920698 4920719 -116336811 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 622 318 133 0 0 chr12 4920719 4920764 -116336766 - B1_Mus1 SINE Alu -103 45 1 9 622 883 71 15 30 chr12 4920796 4920927 -116336603 + B1_Mus1 SINE Alu 20 148 0 9 622 45 75 0 0 chr12 4920927 4921021 -116336509 + AT_rich Low_complexity Low_complexity 1 94 0 9 622 1156 281 69 27 chr12 4921168 4921574 -116335956 - BGLII_B LTR ERVK -18 423 1 9 622 298 360 52 43 chr12 4921707 4921823 -116335707 + PB1 SINE Alu 11 127 0 9 622 306 293 0 13 chr12 4921882 4921958 -116335572 - B1F SINE Alu -5 144 70 9 622 1181 93 0 18 chr12 4921971 4922136 -116335394 + B2_Mm2 SINE B2 3 164 -31 9 622 1320 27 0 0 chr12 4922170 4922317 -116335213 - B1_Mus2 SINE Alu 0 147 1 9 622 31 0 0 0 chr12 4922319 4922350 -116335180 + AT_rich Low_complexity Low_complexity 1 31 0 9 622 1249 65 4 17 chr12 4922696 4922931 -116334599 + (TTTC)n Simple_repeat Simple_repeat 1 231 0 9 622 493 150 0 48 chr12 4923062 4923146 -116334384 - B1_Mur2 SINE Alu -4 145 66 9 622 27 0 0 0 chr12 4923151 4923178 -116334352 + AT_rich Low_complexity Low_complexity 1 27 0 9 622 308 203 176 0 chr12 4923580 4923654 -116333876 + B1_Mus1 SINE Alu 13 99 -49 9 622 22 88 0 0 chr12 4924565 4924622 -116332908 + GC_rich Low_complexity Low_complexity 1 57 0 9 622 925 41 131 0 chr12 4926450 4926572 -116330958 - B1_Mus2 SINE Alu -8 139 2 9 622 327 47 0 0 chr12 4927161 4927204 -116330326 - PB1D9 SINE Alu -76 44 2 9 622 251 237 17 0 chr12 4927204 4927220 -116330310 - B4 SINE B4 -163 129 70 9 622 25 65 0 0 chr12 4927357 4927403 -116330127 + AT_rich Low_complexity Low_complexity 1 46 0 9 622 226 33 0 0 chr12 4927403 4927433 -116330097 - B1_Mm SINE Alu -5 142 113 9 622 1086 62 0 82 chr12 4927465 4927623 -116329907 + B1_Mus2 SINE Alu 1 145 -2 9 622 1065 270 60 62 chr12 4927875 4928329 -116329201 - L1MA9 LINE L1 -207 6105 5653 9 622 503 202 46 0 chr12 4928334 4928443 -116329087 - PB1D9 SINE Alu 0 120 7 9 622 738 214 22 28 chr12 4928462 4928640 -116328890 - L1MA9 LINE L1 -498 5670 5494 9 622 807 122 32 0 chr12 4928671 4928794 -116328736 - B1_Mus2 SINE Alu -14 133 7 9 622 425 242 83 68 chr12 4928836 4928969 -116328561 + B1_Mur2 SINE Alu 6 140 -9 9 622 392 209 36 9 chr12 4928982 4929093 -116328437 - L1MA9 LINE L1 -869 5431 5318 9 622 408 258 106 64 chr12 4929579 4929720 -116327810 + B1F SINE Alu 1 147 -2 9 622 673 236 20 27 chr12 4930145 4930293 -116327237 + B1F SINE Alu 1 147 -2 1 622 939 138 0 14 chr12 4930348 4930488 -116327042 + B1_Mur4 SINE Alu 4 141 -9 1 622 271 218 36 0 chr12 4930532 4930597 -116326933 - PB1 SINE Alu -8 119 44 1 622 203 342 63 0 chr12 4930656 4930767 -116326763 + L2a LINE L2 3309 3426 0 1 622 994 101 161 21 chr12 4930836 4931029 -116326501 + Lx3B LINE L1 6754 6973 0 1 622 192 97 0 0 chr12 4931041 4931072 -116326458 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1 622 275 311 55 11 chr12 4931257 4931348 -116326182 - PB1D10 SINE Alu -12 105 11 1 622 217 250 71 0 chr12 4931371 4931427 -116326103 - MER91C DNA Tip100 -48 92 33 1 622 1222 68 7 0 chr12 4932079 4932225 -116325305 - B1_Mus2 SINE Alu 0 147 1 1 622 615 289 45 0 chr12 4932372 4932528 -116325002 + RSINE1 SINE B4 3 165 0 1 622 253 222 0 73 chr12 4932637 4932705 -116324825 - PB1D10 SINE Alu -8 109 47 1 622 1480 75 27 5 chr12 4932765 4932952 -116324578 - B2_Mm2 SINE B2 -4 191 1 1 622 378 61 0 0 chr12 4933137 4933186 -116324344 + (TTA)n Simple_repeat Simple_repeat 2 50 0 1 622 443 248 128 0 chr12 4933195 4933304 -116324226 - B1_Mur1 SINE Alu -26 123 1 1 622 459 235 12 0 chr12 4933432 4933517 -116324013 - ID_B1 SINE B4 -131 93 8 1 622 1197 29 43 0 chr12 4934068 4934208 -116323322 + B1_Mus2 SINE Alu 2 147 0 1 622 237 65 0 0 chr12 4934208 4934239 -116323291 + (A)n Simple_repeat Simple_repeat 1 31 0 1 622 636 291 42 60 chr12 4934565 4934850 -116322680 - B4A SINE B4 -11 281 2 1 622 1233 81 0 0 chr12 4934861 4935009 -116322521 - B1_Mus1 SINE Alu 0 148 1 1 622 329 287 52 61 chr12 4935106 4935221 -116322309 - PB1 SINE Alu 0 127 14 1 622 590 269 13 19 chr12 4935207 4935366 -116322164 - B3 SINE B2 -19 197 40 1 622 395 280 22 15 chr12 4935765 4935899 -116321631 - B1F2 SINE Alu -5 144 10 1 622 309 100 0 0 chr12 4935950 4936000 -116321530 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 622 318 279 24 37 chr12 4936003 4936085 -116321445 - RSINE1 SINE B4 -15 150 70 1 622 1373 62 102 0 chr12 4936126 4936303 -116321227 - B2_Mm2 SINE B2 0 195 1 1 622 1457 88 19 10 chr12 4936771 4937022 -116320508 + L1Md_F2 LINE L1 6356 6582 0 1 622 206 325 136 12 chr12 4937776 4937857 -116319673 + MIRb SINE MIR 87 177 -91 1 622 244 224 197 0 chr12 4938198 4938274 -116319256 - MER5A DNA MER1_type -8 181 91 1 622 336 121 183 10 chr12 4938332 4938417 -116319113 - B1_Mus2 SINE Alu 0 150 59 1 622 181 304 54 0 chr12 4938417 4938473 -116319057 - MIRc SINE MIR -140 128 70 1 622 414 286 116 36 chr12 4938500 4938638 -116318892 + B1F2 SINE Alu 1 149 0 1 622 200 111 0 27 chr12 4938638 4938659 -116318871 + (CAAAAA)n Simple_repeat Simple_repeat 6 26 0 1 622 1614 42 0 35 chr12 4938659 4938858 -116318672 + B2_Mm1a SINE B2 2 193 0 1 622 200 111 0 27 chr12 4938858 4938873 -116318657 + (CAAAAA)n Simple_repeat Simple_repeat 3 17 0 1 622 369 211 0 0 chr12 4938880 4938937 -116318593 - PB1D9 SINE Alu -62 58 2 1 622 298 275 0 80 chr12 4938937 4938948 -116318582 - B4A SINE B4 -143 127 81 1 622 207 209 0 0 chr12 4938963 4939006 -116318524 + T-rich Low_complexity Low_complexity 1 43 0 1 622 210 211 111 37 chr12 4939032 4939086 -116318444 - B1_Mur4 SINE Alu -90 60 3 1 622 681 134 33 16 chr12 4939423 4939544 -116317986 + B1_Mur2 SINE Alu 27 149 0 1 622 354 23 0 0 chr12 4939855 4939898 -116317632 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 1 622 553 124 29 0 chr12 4939898 4940003 -116317527 + T-rich Low_complexity Low_complexity 2 109 0 1 622 473 275 120 15 chr12 4940005 4940138 -116317392 - B1_Mur1 SINE Alu -2 147 1 1 622 227 262 89 130 chr12 4940029 4940152 -116317378 - MT2B LTR ERVL -330 271 154 1 622 222 311 13 26 chr12 4940161 4940237 -116317293 + MIRc SINE MIR 70 144 -124 1 622 306 0 0 0 chr12 4940285 4940319 -116317211 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 622 427 286 33 0 chr12 4940319 4940410 -116317120 - PB1D10 SINE Alu -14 103 10 1 622 291 330 31 10 chr12 4940327 4940425 -116317105 - ID_B1 SINE B4 -48 176 77 1 622 705 239 375 0 chr12 4940458 4940910 -116316620 + Lx9 LINE L1 6994 7617 -27 1 622 256 232 0 109 chr12 4940936 4940951 -116316579 + MT2B LTR ERVL 155 159 -442 1 622 386 265 51 0 chr12 4940951 4941049 -116316481 + B1_Mus1 SINE Alu 3 105 -43 1 622 239 225 139 14 chr12 4941325 4941397 -116316133 - PB1 SINE Alu 0 127 47 1 622 438 268 130 0 chr12 4941530 4941653 -116315877 - ID_B1 SINE B4 -2 222 84 1 622 242 313 14 43 chr12 4941651 4941721 -116315809 - ID_B1 SINE B4 -75 149 82 1 622 1344 97 11 5 chr12 4941986 4942173 -116315357 - B2_Mm2 SINE B2 -6 189 2 1 622 1237 41 0 7 chr12 4942194 4942341 -116315189 - B1_Mus2 SINE Alu 0 147 2 1 622 462 264 25 8 chr12 4942345 4942467 -116315063 + L1MC4 LINE L1 6779 6902 -1140 1 622 1237 74 0 13 chr12 4942471 4942621 -116314909 + B1_Mus1 SINE Alu 1 148 0 1 622 649 129 134 10 chr12 4942621 4942778 -116314752 - MTB LTR MaLR -28 379 207 1 622 202 356 0 0 chr12 4943208 4943281 -116314249 + CT-rich Low_complexity Low_complexity 3 75 0 1 622 396 171 247 55 chr12 4943830 4943989 -116313541 - B2_Mm2 SINE B2 -7 188 2 1 622 1157 125 17 0 chr12 4943989 4944165 -116313365 - B2_Mm1t SINE B2 -14 179 1 1 622 595 299 31 25 chr12 4944677 4944838 -116312692 - RSINE1 SINE B4 0 165 4 1 622 351 0 0 0 chr12 4944844 4944883 -116312647 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 622 231 232 0 0 chr12 4944896 4944978 -116312552 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 1 622 427 250 50 0 chr12 4944978 4945078 -116312452 - ID_B1 SINE B4 -11 213 109 1 622 1177 55 0 0 chr12 4945266 4945412 -116312118 - B1_Mus1 SINE Alu 0 148 3 1 622 358 103 44 0 chr12 4945547 4945615 -116311915 + (TCTCCC)n Simple_repeat Simple_repeat 2 72 0 1 622 24 32 0 0 chr12 4946352 4946383 -116311147 + AT_rich Low_complexity Low_complexity 1 31 0 1 622 220 211 17 34 chr12 4947111 4947170 -116310360 + (TATG)n Simple_repeat Simple_repeat 1 58 0 1 622 515 254 64 21 chr12 4947189 4947330 -116310200 - B4A SINE B4 -20 272 126 1 622 621 286 8 0 chr12 4947668 4947794 -116309736 - B1_Mur1 SINE Alu -21 128 2 1 622 443 250 16 39 chr12 4947899 4948028 -116309502 - B3A SINE B2 -7 191 66 1 622 528 267 42 49 chr12 4948055 4948120 -116309410 - B1_Mur1 SINE Alu -6 143 81 1 622 3131 61 10 0 chr12 4948120 4948516 -116309014 - MTB LTR MaLR 0 400 1 1 622 528 267 42 49 chr12 4948516 4948592 -116308938 - B1_Mur1 SINE Alu -69 80 3 1 622 229 196 98 0 chr12 4948555 4948606 -116308924 - MT2B2 LTR ERVL -287 297 242 1 622 541 209 9 0 chr12 4948935 4949040 -116308490 - B3A SINE B2 -28 170 65 1 622 247 80 0 57 chr12 4949113 4949166 -116308364 + (TCTCC)n Simple_repeat Simple_repeat 3 52 0 1 622 508 211 189 7 chr12 4949168 4949316 -116308214 - ID_B1 SINE B4 -48 176 2 1 622 306 0 0 0 chr12 4949322 4949356 -116308174 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 1 622 810 194 206 0 chr12 4949356 4949526 -116308004 - B3 SINE B2 -9 207 3 1 622 230 322 17 0 chr12 4949728 4949787 -116307743 - tRNA-Ala-GCY_ tRNA tRNA -14 61 2 1 622 688 173 0 0 chr12 4950704 4950814 -116306716 - B1_Mur3 SINE Alu -13 136 27 1 622 3003 165 116 3 chr12 4950868 4951439 -116306091 - RLTR17 LTR ERVK -57 635 1 1 622 215 357 43 0 chr12 4951907 4951977 -116305553 + AluF_3 SINE Alu 138 210 -101 1 622 183 80 0 0 chr12 4952046 4952071 -116305459 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 622 219 69 0 0 chr12 4952437 4952466 -116305064 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 622 572 210 70 35 chr12 4952468 4952611 -116304919 + B1_Mur2 SINE Alu 2 149 0 1 622 1056 215 4 93 chr12 4952613 4952839 -116304691 - B3 SINE B2 -10 206 1 1 622 255 311 27 36 chr12 4953060 4953170 -116304360 - L1MA10 LINE L1 -46 6288 6180 1 622 335 287 62 62 chr12 4953298 4953428 -116304102 - ID_B1 SINE B4 -16 208 79 1 622 1539 58 0 0 chr12 4953528 4953717 -116303813 - B2_Mm1t SINE B2 -3 190 2 1 622 216 0 0 0 chr12 4953882 4953906 -116303624 + (A)n Simple_repeat Simple_repeat 1 24 0 1 622 279 253 44 44 chr12 4953920 4954011 -116303519 - L1MC LINE L1 -683 5650 5560 1 622 531 193 18 27 chr12 4954125 4954237 -116303293 + PB1D9 SINE Alu 10 120 0 1 622 494 209 50 50 chr12 4954285 4954426 -116303104 + RSINE1 SINE B4 1 141 -24 1 622 180 200 0 0 chr12 4954604 4954649 -116302881 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 622 798 263 139 10 chr12 4954676 4954982 -116302548 - ORR1E LTR MaLR 0 379 14 1 622 317 183 67 0 chr12 4954982 4955042 -116302488 - ORR1E-int LTR MaLR -1 1369 1306 1 622 215 100 0 48 chr12 4955042 4955084 -116302446 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 1 622 1244 20 7 0 chr12 4955085 4955231 -116302299 - B1_Mus2 SINE Alu 0 147 1 1 622 2116 262 39 39 chr12 4955252 4955840 -116301690 - ORR1E-int LTR MaLR -194 1176 589 1 622 537 213 162 26 chr12 4955848 4956002 -116301528 - ORR1E LTR MaLR -5 369 195 1 622 1362 173 37 12 chr12 4956041 4956287 -116301243 - Lx5 LINE L1 -63 6987 6736 1 622 665 168 82 181 chr12 4956287 4956404 -116301126 - ORR1E LTR MaLR -165 209 97 1 622 180 97 0 0 chr12 4956404 4956435 -116301095 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 1 622 665 168 82 181 chr12 4956435 4956456 -116301074 - ORR1E LTR MaLR -278 96 94 1 622 685 196 41 14 chr12 4956456 4956601 -116300929 - B1_Mur4 SINE Alu 0 150 2 1 622 665 168 82 181 chr12 4956601 4956693 -116300837 - ORR1E LTR MaLR -281 93 1 1 622 611 205 103 0 chr12 4956726 4956882 -116300648 - L1M3e LINE L1 -6818 212 41 1 622 1449 44 28 0 chr12 4956992 4957174 -116300356 + B2_Mm2 SINE B2 1 187 -8 1 622 33 0 0 0 chr12 4957560 4957593 -116299937 + AT_rich Low_complexity Low_complexity 1 33 0 1 622 493 67 13 0 chr12 4957631 4957706 -116299824 - B1_Mus2 SINE Alu 0 147 72 1 622 362 70 0 0 chr12 4957706 4957763 -116299767 - B1_Mus2 SINE Alu -19 128 72 1 622 506 40 81 0 chr12 4957763 4957837 -116299693 - B1_Mus2 SINE Alu -19 128 49 1 622 436 234 23 66 chr12 4957859 4958011 -116299519 - PB1 SINE Alu -6 143 2 1 622 300 269 34 11 chr12 4958217 4958352 -116299178 - L1_Rod LINE L1 -860 5283 5131 1 622 270 306 73 9 chr12 4958353 4958462 -116299068 - PB1D10 SINE Alu -1 116 1 1 622 706 193 57 0 chr12 4958699 4958839 -116298691 - B1_Mur2 SINE Alu 0 149 2 1 622 754 213 119 26 chr12 4958847 4959040 -116298490 - B3 SINE B2 -5 211 1 1 622 385 261 79 26 chr12 4959052 4959166 -116298364 - PB1 SINE Alu -7 120 1 1 622 673 164 21 63 chr12 4959655 4959798 -116297732 - B1_Mus2 SINE Alu 0 147 11 1 622 340 216 8 136 chr12 4959704 4959822 -116297708 - MT2B LTR ERVL -344 257 155 1 622 248 212 11 121 chr12 4959931 4960022 -116297508 - MLT1A1 LTR MaLR -11 397 317 1 622 779 249 81 138 chr12 4960457 4961090 -116296440 - RMER1B Other Other -4 1026 92 1 622 473 267 40 14 chr12 4961160 4961308 -116296222 - RSINE1 SINE B4 -12 153 2 1 622 611 198 18 0 chr12 4961658 4961769 -116295761 + B1_Mus1 SINE Alu 2 114 -34 1 622 194 0 0 37 chr12 4961775 4961802 -116295728 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 622 1157 55 0 0 chr12 4961886 4962031 -116295499 - B1_Mus2 SINE Alu -2 145 1 1 622 2089 62 37 0 chr12 4963030 4963302 -116294228 - L1_Mus1 LINE L1 0 6567 6286 1 622 240 86 0 0 chr12 4963441 4963476 -116294054 + (T)n Simple_repeat Simple_repeat 1 35 0 1 622 266 298 79 47 chr12 4963625 4963752 -116293778 - MER106B DNA MER1_type -910 149 19 1 622 249 260 100 38 chr12 4963875 4963955 -116293575 + RLTR25A LTR ERVK 499 583 -520 1 622 295 209 125 3 chr12 4963898 4963964 -116293566 + B1_Mur4 SINE Alu 52 123 -24 1 622 270 81 0 0 chr12 4963964 4964001 -116293529 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 622 279 265 80 57 chr12 4964001 4964022 -116293508 + B1_Mus2 SINE Alu 124 141 -6 1 622 771 209 14 0 chr12 4964107 4964246 -116293284 + B1_Mur1 SINE Alu 2 142 -7 1 622 43 81 0 0 chr12 4964428 4964527 -116293003 + AT_rich Low_complexity Low_complexity 1 99 0 1 622 626 181 25 18 chr12 4965066 4965229 -116292301 + T-rich Low_complexity Low_complexity 2 165 0 1 622 1433 66 16 0 chr12 4965246 4965428 -116292102 + B2_Mm2 SINE B2 2 186 -9 1 622 1325 77 33 0 chr12 4965494 4965675 -116291855 + B2_Mm1t SINE B2 1 187 -6 1 622 591 298 22 16 chr12 4965715 4965899 -116291631 - MER2 DNA MER2_type -7 338 154 1 622 517 278 154 11 chr12 4965904 4966079 -116291451 + RMER30 DNA MER1_type 2 201 -1 1 622 244 221 162 63 chr12 4966083 4966194 -116291336 - MER2 DNA MER2_type -207 138 17 1 622 225 253 123 94 chr12 4966908 4967078 -116290452 + B4 SINE B4 50 224 -68 1 622 293 232 34 34 chr12 4966993 4967082 -116290448 + PB1D7 SINE Alu 31 119 -1 1 622 27 73 0 0 chr12 4967160 4967215 -116290315 + AT_rich Low_complexity Low_complexity 1 55 0 1 622 608 25 0 0 chr12 4967451 4967531 -116289999 + L1Md_T LINE L1 6491 6570 -12 1 622 773 169 23 0 chr12 4967569 4967699 -116289831 + B1_Mur1 SINE Alu 1 133 -16 1 622 24 32 0 0 chr12 4968376 4968407 -116289123 + AT_rich Low_complexity Low_complexity 1 31 0 1 622 216 269 77 0 chr12 4968520 4968572 -116288958 - PB1D9 SINE Alu 0 120 65 1 622 225 0 0 0 chr12 4968605 4968630 -116288900 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 1 622 303 271 85 0 chr12 4968659 4968788 -116288742 - RSINE1 SINE B4 -24 141 2 1 622 410 281 84 4 chr12 4969497 4969722 -116287808 + L1M2c LINE L1 1598 1840 -4949 1 622 317 328 20 103 chr12 4969797 4969943 -116287587 + B3A SINE B2 49 182 -16 1 622 514 228 67 14 chr12 4970001 4970210 -116287320 + L1M2c LINE L1 3577 3796 -2989 1 622 352 288 80 24 chr12 4970470 4970719 -116286811 + L1M2c LINE L1 3861 4123 -2662 1 622 465 280 80 0 chr12 4970719 4970844 -116286686 + ID_B1 SINE B4 82 216 -8 1 622 489 247 89 74 chr12 4970873 4971131 -116286399 + L1M2c LINE L1 4104 4365 -2420 1 622 714 303 43 10 chr12 4971380 4971680 -116285850 + L1M2c LINE L1 5222 5531 -1254 1 622 1082 56 21 0 chr12 4971687 4971831 -116285699 + B1_Mus1 SINE Alu 2 148 0 1 622 411 73 0 0 chr12 4971831 4971886 -116285644 + (GAAAA)n Simple_repeat Simple_repeat 4 58 0 1 622 242 202 19 19 chr12 4972020 4972087 -116285443 - ORR1D1 LTR MaLR -303 75 9 1 622 329 93 19 0 chr12 4972832 4972886 -116284644 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 622 253 239 23 155 chr12 4972886 4973015 -116284515 - RMER12 LTR ERVK -491 831 720 1 622 207 0 0 0 chr12 4973177 4973200 -116284330 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 622 321 297 92 0 chr12 4973545 4973650 -116283880 + PB1D10 SINE Alu 10 120 -29 1 622 735 179 8 0 chr12 4973869 4973992 -116283538 - B3 SINE B2 0 216 93 1 622 920 253 207 55 chr12 4974520 4974959 -116282571 - Lx8 LINE L1 -2 7471 6966 1 622 188 138 0 0 chr12 4975210 4975239 -116282291 - L2 LINE L2 -1098 2321 2293 1 622 332 255 81 9 chr12 4975487 4975598 -116281932 + RSINE1 SINE B4 3 121 -44 1 622 1307 94 21 0 chr12 4975804 4975995 -116281535 - B2_Mm2 SINE B2 0 195 1 1 622 183 80 0 0 chr12 4977421 4977446 -116280084 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 622 1126 29 0 7 chr12 4978489 4978629 -116278901 + B1_Mus2 SINE Alu 1 139 -8 1 622 324 64 0 0 chr12 4978629 4978676 -116278854 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 1 622 202 349 81 52 chr12 4978998 4979134 -116278396 - MER5A DNA MER1_type -1 188 49 1 622 276 250 302 0 chr12 4980311 4980407 -116277123 + PB1 SINE Alu 1 125 -2 1 623 406 289 120 21 chr12 4981649 4981840 -116275690 + ID_B1 SINE B4 4 213 -11 1 623 322 221 126 0 chr12 4981930 4982025 -116275505 - PB1D9 SINE Alu 0 120 14 1 623 340 271 171 8 chr12 4982397 4982520 -116275010 - B1F SINE Alu -6 143 1 1 623 1796 189 55 5 chr12 4982621 4983003 -116274527 + Lx4B LINE L1 6649 7049 -9 1 623 333 302 139 13 chr12 4983523 4983674 -116273856 - B4 SINE B4 -121 171 2 1 623 217 273 9 18 chr12 4983732 4983844 -116273686 + CT-rich Low_complexity Low_complexity 3 113 0 1 623 383 264 47 31 chr12 4984182 4984311 -116273219 - B3A SINE B2 0 198 68 1 623 495 225 49 16 chr12 4984334 4984456 -116273074 - B3A SINE B2 -71 127 2 1 623 1294 71 33 0 chr12 4984503 4984685 -116272845 + B2_Mm2 SINE B2 2 189 -6 1 623 534 257 18 0 chr12 4984693 4984802 -116272728 - B1_Mur2 SINE Alu -6 143 33 1 623 553 226 19 58 chr12 4986109 4986264 -116271266 - B1F SINE Alu 0 149 1 1 623 310 303 56 8 chr12 4986960 4987073 -116270457 - B1F1 SINE Alu -8 109 2 1 623 218 345 58 23 chr12 4987115 4987201 -116270329 - L2b LINE L2 0 3375 3287 1 623 387 316 27 26 chr12 4987534 4987663 -116269867 - B1F1 SINE Alu 0 149 20 1 623 261 232 31 104 chr12 4987729 4987757 -116269773 + MT2B LTR ERVL 138 226 -375 1 623 516 29 15 0 chr12 4987757 4987825 -116269705 + B1_Mus1 SINE Alu 2 70 -78 1 623 295 271 50 25 chr12 4987872 4987993 -116269537 - L1M4 LINE L1 -1086 5060 4937 1 623 747 107 174 0 chr12 4988071 4988192 -116269338 + B1_Mur4 SINE Alu 9 150 0 1 623 191 146 0 59 chr12 4988192 4988243 -116269287 + A-rich Low_complexity Low_complexity 1 48 0 1 623 1075 75 0 27 chr12 4988414 4988564 -116268966 - B1_Mm SINE Alu 0 147 2 1 623 2852 49 3 0 chr12 4988746 4989091 -116268439 + ORR1A1 LTR MaLR 1 346 0 1 623 7118 70 15 0 chr12 4989092 4990096 -116267434 + ORR1A1-int LTR MaLR 2 1020 -772 1 623 833 141 14 0 chr12 4990093 4990235 -116267295 - ORR1B1 LTR MaLR -250 144 1 1 623 669 209 8 0 chr12 4990235 4990369 -116267161 + B1_Mur3 SINE Alu 12 146 -3 1 623 267 104 0 0 chr12 4990416 4990464 -116267066 - B2_Mm1t SINE B2 -8 185 138 1 623 365 174 9 0 chr12 4990454 4990518 -116267012 - B2_Mm2 SINE B2 -102 114 47 1 623 1137 142 6 6 chr12 4990567 4990744 -116266786 - B2_Mm1t SINE B2 -16 177 1 1 623 212 283 0 19 chr12 4991031 4991085 -116266445 - ID SINE ID -147 77 25 1 623 1464 78 5 0 chr12 4991420 4991611 -116265919 + B2_Mm1t SINE B2 1 192 -1 1 623 1156 74 0 0 chr12 4991770 4991918 -116265612 - B1_Mus1 SINE Alu 0 148 1 1 623 429 316 87 33 chr12 4992220 4992462 -116265068 - MER2 DNA MER2_type -42 303 49 1 623 273 284 15 0 chr12 4993260 4993327 -116264203 + ID4_ SINE ID 3 70 -13 1 623 670 348 63 49 chr12 4993358 4993645 -116263885 + B4A SINE B4 2 292 0 1 623 29 60 0 0 chr12 4993663 4993713 -116263817 + AT_rich Low_complexity Low_complexity 1 50 0 1 623 2176 65 7 3 chr12 4993894 4994188 -116263342 - L1_Mus2 LINE L1 0 6566 6272 1 623 1032 251 0 0 chr12 4994206 4994421 -116263109 - B3 SINE B2 0 216 2 1 623 409 261 106 50 chr12 4994569 4994730 -116262800 - B4 SINE B4 -115 177 8 1 623 186 43 0 0 chr12 4994749 4994772 -116262758 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 623 1215 39 0 13 chr12 4994775 4994931 -116262599 - B2_Mm2 SINE B2 -41 154 1 1 623 299 287 74 11 chr12 4995278 4995373 -116262157 + PB1D10 SINE Alu 9 109 -8 1 623 555 277 48 26 chr12 4995950 4996139 -116261391 - B3A SINE B2 -5 193 1 1 623 1401 76 22 0 chr12 4996264 4996449 -116261081 - B2_Mm2 SINE B2 -6 189 1 1 623 610 55 318 0 chr12 4996521 4996631 -116260899 + B1_Mur4 SINE Alu 1 145 -5 1 623 243 0 0 0 chr12 4996635 4996662 -116260868 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 623 446 286 290 11 chr12 4996692 4996868 -116260662 - MLT1A1 LTR MaLR -38 370 133 1 623 595 235 36 7 chr12 4996868 4997005 -116260525 - B1_Mur1 SINE Alu -8 141 1 1 623 446 286 290 11 chr12 4997005 4997107 -116260423 - MLT1A1 LTR MaLR -276 132 15 1 623 289 235 204 0 chr12 4997176 4997274 -116260256 - B1_Mus2 SINE Alu -29 118 1 1 623 21 57 0 0 chr12 4997626 4997661 -116259869 + AT_rich Low_complexity Low_complexity 1 35 0 1 623 199 289 95 12 chr12 4998363 4998447 -116259083 + L2c LINE L2 3282 3372 -15 1 623 4132 97 37 5 chr12 5000484 5001127 -116256403 + L1_Mus2 LINE L1 3396 4059 -1824 1 623 7042 72 9 2 chr12 5001131 5002722 -116254808 + L1_Mus2 LINE L1 4895 6503 -63 1 623 742 324 72 18 chr12 5003058 5003335 -116254195 - B4A SINE B4 0 292 1 2 623 279 203 0 0 chr12 5003719 5003778 -116253752 + CT-rich Low_complexity Low_complexity 1 59 0 3 623 28 0 0 0 chr12 5003790 5003818 -116253712 + AT_rich Low_complexity Low_complexity 1 28 0 4 623 182 400 20 31 chr12 5004791 5004889 -116252641 - MER5A DNA MER1_type -9 180 84 5 623 571 292 8 0 chr12 5005180 5005300 -116252230 + ID_B1 SINE B4 92 212 -12 6 623 51 17 0 0 chr12 5005472 5005530 -116252000 + AT_rich Low_complexity Low_complexity 1 58 0 7 623 541 314 58 31 chr12 5005559 5005750 -116251780 - B3A SINE B2 -1 197 2 8 623 364 252 40 0 chr12 5006075 5006174 -116251356 - U6 snRNA snRNA -4 103 1 9 623 337 215 31 0 chr12 5007647 5007712 -116249818 + ID4 SINE ID 8 74 -9 1 623 570 29 0 0 chr12 5008849 5008917 -116248613 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 1 623 27 0 0 0 chr12 5009226 5009253 -116248277 + AT_rich Low_complexity Low_complexity 1 27 0 1 623 2714 60 3 3 chr12 5009253 5009603 -116247927 - L1_Mus1 LINE L1 0 6567 6218 1 623 2818 53 13 0 chr12 5009603 5009980 -116247550 + L1_Mus1 LINE L1 5776 6157 -410 1 623 6393 32 0 0 chr12 5009977 5010766 -116246764 + L1Md_F2 LINE L1 4796 5584 -299 1 623 8154 41 4 4 chr12 5010769 5011764 -116245766 + L1Md_F2 LINE L1 5588 6582 0 1 623 339 109 0 0 chr12 5011764 5011810 -116245720 + L1_Mus1 LINE L1 6159 6204 -363 1 623 372 88 0 0 chr12 5011923 5011980 -116245550 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 623 465 301 24 0 chr12 5011982 5012105 -116245425 - B1F SINE Alu -20 129 4 1 623 2160 111 59 76 chr12 5012524 5012932 -116244598 - RLTR9D LTR ERVK -1 402 2 1 623 785 158 28 14 chr12 5014123 5014264 -116243266 - B1_Mur4 SINE Alu -7 143 1 1 623 30 27 0 0 chr12 5014266 5014303 -116243227 + AT_rich Low_complexity Low_complexity 1 37 0 1 623 327 215 0 71 chr12 5014719 5014789 -116242741 + B3A SINE B2 41 105 -93 2 623 899 107 84 0 chr12 5015038 5015169 -116242361 - B1_Mur4 SINE Alu 0 150 9 2 623 1660 134 19 4 chr12 5015307 5015570 -116241960 - RLTR1B LTR ERV1 0 512 246 2 623 349 293 58 14 chr12 5015862 5016070 -116241460 + L1M4 LINE L1 5012 5228 -918 2 623 1464 49 22 0 chr12 5016617 5016801 -116240729 - B2_Mm2 SINE B2 -6 189 2 2 623 1224 71 77 0 chr12 5016817 5016985 -116240545 - B2_Mm2 SINE B2 -14 181 1 2 623 314 193 18 0 chr12 5017240 5017297 -116240233 - RSINE1 SINE B4 -104 61 4 2 623 389 232 0 24 chr12 5017846 5017930 -116239600 - MTEa LTR MaLR -290 89 8 2 623 25 31 0 0 chr12 5017972 5018004 -116239526 + AT_rich Low_complexity Low_complexity 1 32 0 2 623 336 201 118 7 chr12 5018716 5018797 -116238733 - B4 SINE B4 -68 97 11 2 623 318 169 0 0 chr12 5018797 5018856 -116238674 - PB1D10 SINE Alu 0 117 59 3 623 22 0 0 0 chr12 5018943 5018965 -116238565 + AT_rich Low_complexity Low_complexity 1 22 0 3 623 288 170 0 0 chr12 5018994 5019047 -116238483 + CT-rich Low_complexity Low_complexity 1 53 0 3 623 562 267 0 8 chr12 5019049 5019170 -116238360 - PB1D9 SINE Alu 0 120 1 3 623 503 310 48 44 chr12 5019889 5020095 -116237435 + B4A SINE B4 1 207 -85 3 623 422 368 0 0 chr12 5020150 5020316 -116237214 + (CA)n Simple_repeat Simple_repeat 1 166 0 3 623 247 352 91 30 chr12 5021862 5021901 -116235629 - ID_B1 SINE B4 0 224 85 3 623 324 290 118 0 chr12 5021901 5021994 -116235536 - PB1D9 SINE Alu -13 107 4 3 623 492 18 0 0 chr12 5022101 5022158 -116235372 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 623 342 0 0 0 chr12 5022158 5022195 -116235335 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 623 222 267 173 0 chr12 5022212 5022287 -116235243 - B4 SINE B4 -203 89 2 4 623 1041 44 6 30 chr12 5022654 5022819 -116234711 + (TTC)n Simple_repeat Simple_repeat 2 162 0 4 623 1107 42 7 34 chr12 5022821 5022968 -116234562 - B1_Mm SINE Alu 0 147 5 4 623 2969 101 16 23 chr12 5022993 5023480 -116234050 + L1_Mm LINE L1 3372 3855 -2028 4 623 503 230 41 54 chr12 5023502 5023649 -116233881 + B4 SINE B4 77 221 -71 4 623 858 98 75 0 chr12 5023521 5023654 -116233876 + B1_Mus1 SINE Alu 6 148 0 4 623 620 235 0 22 chr12 5025300 5025435 -116232095 - B1_Mur1 SINE Alu -13 136 5 4 623 268 324 18 9 chr12 5025775 5025887 -116231643 - MER90a LTR ERV1 -142 472 360 4 623 486 273 98 8 chr12 5025900 5026022 -116231508 + RSINE1 SINE B4 3 135 -30 4 623 662 261 114 9 chr12 5026038 5026266 -116231264 - MER90a LTR ERV1 -320 294 4 4 623 264 30 0 0 chr12 5026706 5026739 -116230791 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 623 180 219 0 0 chr12 5026942 5026983 -116230547 + (TAA)n Simple_repeat Simple_repeat 2 42 0 5 623 252 288 0 15 chr12 5026983 5027050 -116230480 + ID2 SINE ID 2 67 -16 5 623 206 326 33 22 chr12 5027499 5027590 -116229940 + MIR SINE MIR 104 195 -67 5 623 29 0 0 0 chr12 5027869 5027898 -116229632 + AT_rich Low_complexity Low_complexity 1 29 0 5 623 1204 63 6 0 chr12 5028215 5028374 -116229156 + B2_Mm2 SINE B2 2 161 -34 5 623 261 0 0 0 chr12 5028374 5028403 -116229127 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 623 940 276 99 28 chr12 5029119 5029473 -116228057 - MLT1B LTR MaLR 0 390 12 5 623 309 109 0 0 chr12 5029496 5029551 -116227979 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 623 352 41 0 0 chr12 5029553 5029602 -116227928 - B1_Mm SINE Alu 0 147 99 5 623 420 220 11 11 chr12 5029678 5029770 -116227760 + B3 SINE B2 119 210 -6 5 623 274 262 62 16 chr12 5029817 5029945 -116227585 + L1MD LINE L1 4422 4555 -1591 6 623 225 270 0 0 chr12 5029961 5030024 -116227506 - B3A SINE B2 -132 66 4 6 623 370 234 81 36 chr12 5030320 5030431 -116227099 - ID_B1 SINE B4 -7 217 102 6 623 256 298 78 71 chr12 5030431 5030461 -116227069 - B1_Mur1 SINE Alu -7 142 1 6 623 189 0 0 0 chr12 5030722 5030743 -116226787 + (T)n Simple_repeat Simple_repeat 1 21 0 6 623 1143 82 0 0 chr12 5030743 5030890 -116226640 - B1_Mus2 SINE Alu 0 147 1 6 623 289 270 102 59 chr12 5030949 5031067 -116226463 - RSINE1 SINE B4 0 165 43 6 623 23 68 0 0 chr12 5031141 5031185 -116226345 + AT_rich Low_complexity Low_complexity 1 44 0 6 623 1363 96 0 5 chr12 5031748 5031937 -116225593 - B2_Mm2 SINE B2 -7 188 1 6 623 189 0 0 0 chr12 5032881 5032902 -116224628 + (TCCC)n Simple_repeat Simple_repeat 1 21 0 6 623 244 333 133 0 chr12 5032920 5033010 -116224520 - B1F SINE Alu -28 121 20 7 623 256 288 0 17 chr12 5032992 5033052 -116224478 - ID SINE ID -163 61 3 6 623 387 0 0 0 chr12 5033482 5033525 -116224005 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 623 180 0 0 0 chr12 5034169 5034189 -116223341 + (T)n Simple_repeat Simple_repeat 1 20 0 7 623 1702 16 0 0 chr12 5034680 5034872 -116222658 - B2_Mm1a SINE B2 -1 192 1 7 623 295 198 85 47 chr12 5034913 5035019 -116222511 - Lx8 LINE L1 -9 7464 7355 7 623 198 0 0 0 chr12 5035020 5035042 -116222488 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 7 623 761 265 108 40 chr12 5035177 5035519 -116222011 - Lx8 LINE L1 -332 7312 6821 7 623 433 324 40 20 chr12 5035757 5035908 -116221622 + RSINE1 SINE B4 8 161 -4 7 623 1161 57 0 0 chr12 5039699 5039839 -116217691 + B1_Mus2 SINE Alu 1 140 -7 7 623 345 123 0 0 chr12 5039841 5039906 -116217624 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 7 623 472 30 15 15 chr12 5040209 5040276 -116217254 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 623 718 262 127 17 chr12 5040301 5040538 -116216992 - B4A SINE B4 -20 272 10 8 623 216 253 50 90 chr12 5041574 5041624 -116215906 + B1F SINE Alu 53 148 -1 8 623 266 220 0 0 chr12 5041624 5041674 -116215856 + ID_B1 SINE B4 175 224 0 8 623 244 196 71 0 chr12 5042053 5042109 -116215421 - MIRm SINE MIR -13 263 204 8 623 206 281 101 30 chr12 5042057 5042156 -116215374 - L2c LINE L2 -8 3379 3274 8 623 27 0 0 0 chr12 5042185 5042212 -116215318 + AT_rich Low_complexity Low_complexity 1 27 0 8 623 415 184 0 50 chr12 5042241 5042321 -116215209 - ID4_ SINE ID -5 78 3 8 623 234 0 0 0 chr12 5043083 5043109 -116214421 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 623 661 242 38 0 chr12 5043527 5043659 -116213871 - RSINE1 SINE B4 -26 139 3 8 623 764 88 85 39 chr12 5043664 5043794 -116213736 - B1_Mur4 SINE Alu 0 150 15 8 623 980 269 124 24 chr12 5043821 5044354 -116213176 + L1M2 LINE L1 3454 4039 -2104 9 623 739 255 202 57 chr12 5044356 5044722 -116212808 - MTD LTR MaLR 0 419 1 9 623 396 239 191 19 chr12 5044724 5044886 -116212644 - MTD-int LTR MaLR -2 1256 1067 9 623 958 259 208 63 chr12 5044908 5045461 -116212069 - RMER21A LTR ERV1 -113 834 202 9 623 2312 212 237 48 chr12 5045498 5046364 -116211166 - MTD-int LTR MaLR -229 1029 1 9 623 593 256 228 0 chr12 5046364 5046544 -116210986 - MTD LTR MaLR 0 419 199 9 623 691 296 15 16 chr12 5046556 5046721 -116210809 - B3 SINE B2 0 198 35 9 623 413 183 14 0 chr12 5046716 5046787 -116210743 - B1_Mur4 SINE Alu -78 72 1 9 623 537 228 198 16 chr12 5046787 5046961 -116210569 - MTD LTR MaLR -213 208 1 9 623 431 278 97 27 chr12 5046977 5047111 -116210419 + L1M2 LINE L1 4066 4214 -1926 9 623 1316 171 26 194 chr12 5047111 5047569 -116209961 - ORR1C2 LTR MaLR -2 382 2 9 623 431 278 97 27 chr12 5047569 5047619 -116209911 + L1M2 LINE L1 4215 4263 -1877 9 623 260 241 38 0 chr12 5047638 5047717 -116209813 + L1M2 LINE L1 5380 5461 -728 9 623 652 274 70 68 chr12 5048177 5048659 -116208871 + L1MA5 LINE L1 5452 5934 -366 9 623 271 208 0 19 chr12 5049433 5049487 -116208043 - B1_Mur1 SINE Alu -1 148 96 9 623 206 229 14 28 chr12 5050473 5050545 -116206985 + (TA)n Simple_repeat Simple_repeat 2 72 0 9 623 1105 69 7 0 chr12 5054298 5054442 -116203088 - B1_Mus2 SINE Alu 0 147 3 9 623 678 77 0 0 chr12 5054616 5054707 -116202823 - B2_Mm2 SINE B2 -104 91 1 1 623 23 0 0 0 chr12 5055049 5055072 -116202458 + AT_rich Low_complexity Low_complexity 1 23 0 1 623 410 106 9 12 chr12 5055759 5055871 -116201659 - B2_Mm2 SINE B2 0 195 47 1 623 1196 97 11 6 chr12 5055899 5056076 -116201454 - B2_Mm1t SINE B2 -14 179 2 1 623 234 333 19 2 chr12 5056168 5056259 -116201271 - B4 SINE B4 -69 96 2 1 623 1111 172 48 92 chr12 5056314 5056609 -116200921 + RMER1C Other Other 1054 1335 -7 1 623 2491 44 6 187 chr12 5058851 5059327 -116198203 - RLTR10 LTR ERVK 0 390 1 1 623 16460 26 7 5 chr12 5059329 5061299 -116196231 - RLTR10-int LTR ERVK -3 1984 11 1 623 2491 44 6 187 chr12 5061343 5061819 -116195711 - RLTR10 LTR ERVK 0 390 1 1 623 339 287 156 0 chr12 5069195 5069317 -116188213 + ID_B1 SINE B4 81 221 -3 1 623 2903 23 3 3 chr12 5070222 5070568 -116186962 - ORR1A0 LTR MaLR 0 346 1 1 623 22 70 0 0 chr12 5070735 5070778 -116186752 + AT_rich Low_complexity Low_complexity 1 43 0 1 623 1036 302 47 0 chr12 5070778 5071053 -116186477 + B4A SINE B4 3 290 -2 1 623 8264 44 4 2 chr12 5071170 5072253 -116185277 - L1Md_F2 LINE L1 0 6582 5488 1 623 319 285 99 40 chr12 5072280 5072481 -116185049 - L1MC5 LINE L1 -722 7239 7027 1 623 346 214 0 28 chr12 5072517 5072623 -116184907 + CT-rich Low_complexity Low_complexity 1 103 0 1 623 602 276 0 99 chr12 5074381 5074594 -116182936 - B3A SINE B2 0 198 7 1 623 455 264 135 22 chr12 5074790 5074968 -116182562 - B3 SINE B2 -17 199 2 1 623 693 303 66 15 chr12 5075054 5075325 -116182205 - B4 SINE B4 -6 286 2 1 623 1272 256 96 28 chr12 5075395 5076007 -116181523 - L1MEf LINE L1 -3048 3271 2618 1 623 243 0 0 0 chr12 5076206 5076233 -116181297 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 623 516 286 64 0 chr12 5076809 5076949 -116180581 - B1F1 SINE Alu 0 149 1 1 623 1269 253 59 5 chr12 5076985 5077375 -116180155 - L1MB3 LINE L1 -298 5885 5475 1 623 345 313 102 32 chr12 5077404 5077622 -116179908 - L1MEf LINE L1 -3997 2342 2098 1 623 397 266 63 0 chr12 5077649 5077792 -116179738 - L1MEf LINE L1 -4411 2004 1853 1 623 592 273 12 30 chr12 5077839 5077970 -116179560 + RSINE1 SINE B4 3 129 -36 1 623 534 104 21 10 chr12 5077970 5078067 -116179463 + (TG)n Simple_repeat Simple_repeat 1 98 0 1 623 592 273 12 30 chr12 5078067 5078101 -116179429 + RSINE1 SINE B4 130 165 0 1 623 517 281 101 15 chr12 5078113 5078312 -116179218 - L1MEf LINE L1 -4618 1797 1582 1 623 275 314 152 0 chr12 5078521 5078639 -116178891 + RMER30 DNA MER1_type 7 142 -60 1 623 956 260 76 49 chr12 5078672 5079040 -116178490 - MTEb LTR MaLR -1 378 1 1 623 292 248 33 99 chr12 5079241 5079362 -116178168 - PB1D7 SINE Alu -1 119 7 1 623 613 276 106 18 chr12 5079423 5079707 -116177823 - L1MEf LINE L1 -4839 1576 1268 1 623 374 356 35 25 chr12 5079742 5079941 -116177589 - B4A SINE B4 0 292 92 1 623 365 226 87 72 chr12 5080795 5080933 -116176597 + MLT1D LTR MaLR 66 205 -300 1 623 306 335 42 24 chr12 5080918 5081083 -116176447 + MLT1D LTR MaLR 325 492 -13 1 623 286 258 10 119 chr12 5081339 5081440 -116176090 - B4A SINE B4 -151 141 52 1 623 333 290 39 46 chr12 5081873 5082003 -116175527 + ID_B1 SINE B4 70 198 -26 1 623 536 315 0 0 chr12 5082382 5082525 -116175005 + ID_B1 SINE B4 80 222 -2 1 623 466 214 39 0 chr12 5083363 5083466 -116174064 + PB1D10 SINE Alu 6 112 -5 1 623 420 20 0 0 chr12 5083470 5083519 -116174011 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 623 245 229 0 0 chr12 5083587 5083635 -116173895 + GA-rich Low_complexity Low_complexity 1 48 0 1 623 432 0 0 0 chr12 5083755 5083803 -116173727 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 623 23 33 0 0 chr12 5083980 5084010 -116173520 + AT_rich Low_complexity Low_complexity 1 30 0 1 623 25 0 0 0 chr12 5085907 5085932 -116171598 + AT_rich Low_complexity Low_complexity 1 25 0 1 623 29 0 0 0 chr12 5086236 5086265 -116171265 + AT_rich Low_complexity Low_complexity 1 29 0 1 623 206 163 20 0 chr12 5087457 5087506 -116170024 + A-rich Low_complexity Low_complexity 5 54 0 1 623 476 158 118 56 chr12 5088544 5088577 -116168953 - RLTR15 LTR ERVK -188 171 142 1 623 1122 68 0 0 chr12 5088577 5088725 -116168805 + (TC)n Simple_repeat Simple_repeat 1 148 0 1 623 476 158 118 56 chr12 5088725 5088852 -116168678 - RLTR15 LTR ERVK -218 141 1 1 623 1262 151 39 0 chr12 5089354 5089559 -116167971 - B3 SINE B2 -2 214 2 1 623 252 0 0 0 chr12 5092720 5092748 -116164782 + (T)n Simple_repeat Simple_repeat 1 28 0 1 623 982 288 98 9 chr12 5093188 5093504 -116164026 + MER2 DNA MER2_type 1 344 -1 1 623 276 280 10 20 chr12 5093602 5093704 -116163826 + GA-rich Low_complexity Low_complexity 1 101 0 1 623 549 306 75 0 chr12 5093946 5094132 -116163398 - ID_B1 SINE B4 -1 223 24 1 623 266 242 30 0 chr12 5099398 5099464 -116158066 + CT-rich Low_complexity Low_complexity 1 68 0 1 623 351 233 93 0 chr12 5099465 5099551 -116157979 - ID_B1 SINE B4 -10 214 121 1 623 288 0 0 0 chr12 5100156 5100188 -116157342 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 623 242 303 162 0 chr12 5103093 5103235 -116154295 + MIR3 SINE MIR 10 174 -34 1 623 468 0 0 0 chr12 5103953 5104005 -116153525 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 623 342 0 0 0 chr12 5106240 5106278 -116151252 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 623 278 292 69 31 chr12 5107632 5107791 -116149739 - MIR3 SINE MIR -36 172 8 1 623 531 107 0 0 chr12 5109263 5109347 -116148183 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 623 32 0 0 0 chr12 5109678 5109710 -116147820 + AT_rich Low_complexity Low_complexity 1 32 0 1 624 702 250 28 6 chr12 5112183 5112360 -116145170 - B3A SINE B2 -17 181 1 1 624 333 264 266 4 chr12 5113950 5114189 -116143341 + MLT1H LTR MaLR 83 383 -166 1 624 1214 50 0 6 chr12 5114374 5114535 -116142995 + B2_Mm2 SINE B2 2 161 -34 1 624 192 77 0 0 chr12 5114536 5114562 -116142968 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 624 877 280 122 13 chr12 5114598 5114974 -116142556 - L1MB2 LINE L1 -49 6122 5706 1 624 385 240 207 27 chr12 5116753 5116941 -116140589 - ORR1E LTR MaLR 0 370 149 1 624 202 0 29 57 chr12 5116941 5116976 -116140554 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 1 624 499 149 8 32 chr12 5116982 5117107 -116140423 + GA-rich Low_complexity Low_complexity 1 122 0 1 624 631 276 55 11 chr12 5117107 5117290 -116140240 - ORR1E LTR MaLR -168 191 1 1 624 344 261 45 90 chr12 5117457 5117479 -116140051 - B4A SINE B4 -47 245 97 1 624 886 134 0 0 chr12 5117479 5117613 -116139917 - B1_Mus2 SINE Alu -2 145 12 1 624 1239 61 0 0 chr12 5119468 5119632 -116137898 - L1_Mus1 LINE L1 -1 6566 6403 1 624 282 29 0 0 chr12 5119804 5119839 -116137691 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 624 608 315 23 18 chr12 5119842 5120013 -116137517 - B3A SINE B2 -26 172 1 1 624 294 253 125 87 chr12 5122544 5122648 -116134882 + B1_Mur2 SINE Alu 2 109 -40 1 624 589 188 62 7 chr12 5122642 5122787 -116134743 + RLTR11A2 LTR ERVK 368 520 -7 1 624 373 299 90 17 chr12 5122788 5122965 -116134565 - B4A SINE B4 -102 190 1 1 624 180 0 0 0 chr12 5123127 5123147 -116134383 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1 624 1627 162 117 9 chr12 5124429 5124753 -116132777 + ORR1B2 LTR MaLR 1 359 -8 1 624 224 122 0 24 chr12 5125384 5125426 -116132104 + (GGGGA)n Simple_repeat Simple_repeat 3 43 0 1 624 227 257 56 28 chr12 5126970 5127042 -116130488 - MIRb SINE MIR -130 138 65 1 624 265 179 189 0 chr12 5127809 5127885 -116129645 - L2a LINE L2 -7 3419 3303 1 624 256 356 84 8 chr12 5129484 5129661 -116127869 + MIR SINE MIR 27 213 -55 1 624 388 291 84 7 chr12 5129734 5129876 -116127654 + MER91B DNA Tip100 33 185 -5 1 624 213 274 0 0 chr12 5129879 5129930 -116127600 - L2c LINE L2 -82 3305 3255 1 624 837 117 0 0 chr12 5131020 5131157 -116126373 + (GGA)n Simple_repeat Simple_repeat 3 139 0 1 624 459 274 0 8 chr12 5132189 5132307 -116125223 - PB1D10 SINE Alu 0 117 1 1 624 511 307 39 56 chr12 5134388 5134619 -116122911 + B4A SINE B4 1 227 -65 1 624 201 74 0 0 chr12 5134697 5134724 -116122806 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 624 455 229 101 0 chr12 5135766 5135875 -116121655 + PB1D9 SINE Alu 1 120 0 1 624 392 328 15 7 chr12 5136041 5136176 -116121354 + MLT1B LTR MaLR 238 373 -17 1 624 228 163 23 0 chr12 5136421 5136464 -116121066 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 624 356 324 19 0 chr12 5138786 5138894 -116118636 + LTR89 LTR ERVL? 746 855 -24 1 624 269 269 143 0 chr12 5138932 5139051 -116118479 - MIR SINE MIR -11 251 116 1 624 665 201 0 36 chr12 5140116 5140255 -116117275 - B1F SINE Alu -1 148 15 1 624 206 154 26 0 chr12 5141557 5141596 -116115934 + T-rich Low_complexity Low_complexity 4 43 0 1 624 807 76 0 25 chr12 5142691 5142812 -116114718 - B1_Mus1 SINE Alu 0 148 31 1 624 293 0 27 0 chr12 5142873 5142910 -116114620 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 624 723 24 0 0 chr12 5143934 5144019 -116113511 + (TTCC)n Simple_repeat Simple_repeat 3 87 0 1 624 201 189 181 42 chr12 5144783 5144855 -116112675 - L2b LINE L2 -2 3373 3292 1 624 720 196 14 34 chr12 5144897 5145045 -116112485 + B1_Mur1 SINE Alu 5 149 0 1 624 182 341 65 21 chr12 5145194 5145287 -116112243 + MIRb SINE MIR 45 141 -127 1 624 495 0 0 0 chr12 5147628 5147683 -116109847 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 624 230 319 14 0 chr12 5148585 5148654 -116108876 - ID4_ SINE ID -9 74 5 1 624 316 290 70 0 chr12 5148656 5148756 -116108774 - PB1D10 SINE Alu -5 112 6 1 624 351 105 0 0 chr12 5150243 5150300 -116107230 + (TGG)n Simple_repeat Simple_repeat 2 58 0 1 624 237 119 0 0 chr12 5150868 5150910 -116106620 + (TGGGGG)n Simple_repeat Simple_repeat 5 46 0 2 624 210 247 24 121 chr12 5152793 5152876 -116104654 + B4A SINE B4 70 144 -148 2 624 455 244 122 0 chr12 5152837 5152952 -116104578 + B1F1 SINE Alu 21 149 0 2 624 615 281 19 12 chr12 5153017 5153175 -116104355 + ID_B1 SINE B4 4 162 -62 2 624 626 216 9 0 chr12 5153175 5153291 -116104239 + RSINE1 SINE B4 4 120 -45 2 624 508 122 59 30 chr12 5153286 5153387 -116104143 - B1_Mus2 SINE Alu 0 147 44 2 624 925 258 62 25 chr12 5153567 5153842 -116103688 - B4A SINE B4 -1 291 7 2 624 192 239 22 0 chr12 5154171 5154217 -116103313 - L4 LINE RTE -13 2016 1970 2 624 276 286 82 48 chr12 5155296 5155443 -116102087 - MER5A DNA MER1_type 0 189 38 2 624 1135 137 98 0 chr12 5155652 5155857 -116101673 + URR1B DNA MER1_type 1 225 0 2 624 313 291 72 36 chr12 5156860 5156999 -116100531 + RSINE1 SINE B4 3 146 -19 2 624 330 26 0 0 chr12 5157010 5157049 -116100481 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 2 624 180 176 0 0 chr12 5160191 5160225 -116097305 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2 624 1115 124 9 0 chr12 5160514 5160750 -116096780 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 2 624 652 308 56 100 chr12 5160946 5161336 -116096194 - MLT1A LTR MaLR -1 373 1 2 624 396 0 0 0 chr12 5163315 5163359 -116094171 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 624 220 341 67 22 chr12 5164000 5164135 -116093395 + MIR SINE MIR 2 142 -120 2 624 233 208 12 49 chr12 5165420 5165501 -116092029 + CT-rich Low_complexity Low_complexity 2 79 0 2 624 2167 90 22 3 chr12 5165503 5165816 -116091714 + ORR1A2 LTR MaLR 1 319 -8 2 624 383 268 31 23 chr12 5165820 5165950 -116091580 + CT-rich Low_complexity Low_complexity 1 131 0 2 624 463 346 62 72 chr12 5167948 5168238 -116089292 + B4A SINE B4 6 292 0 2 624 1059 260 99 28 chr12 5168733 5168874 -116088656 - MLT2B4 LTR ERVL -133 423 277 2 624 369 0 0 0 chr12 5168874 5168915 -116088615 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 624 1059 260 99 28 chr12 5168915 5169168 -116088362 - MLT2B4 LTR ERVL -280 276 1 2 624 1219 48 14 0 chr12 5169298 5169443 -116088087 + B1_Mus2 SINE Alu 1 147 0 2 624 195 42 0 0 chr12 5169443 5169467 -116088063 + (A)n Simple_repeat Simple_repeat 1 24 0 2 624 1114 283 101 9 chr12 5170907 5171374 -116086156 + L1MA4 LINE L1 5414 5923 -377 2 624 200 296 28 0 chr12 5171387 5171458 -116086072 + GA-rich Low_complexity Low_complexity 3 75 0 2 624 269 268 14 14 chr12 5171555 5171627 -116085903 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 624 187 283 22 0 chr12 5172903 5172949 -116084581 + MIRb SINE MIR 128 174 -94 2 624 457 290 81 0 chr12 5173406 5173530 -116084000 + ID_B1 SINE B4 80 213 -11 2 624 263 330 64 0 chr12 5173447 5173541 -116083989 + B1F2 SINE Alu 50 149 0 2 624 302 310 76 33 chr12 5173621 5173831 -116083699 - L1MEg LINE L1 -3464 2682 2464 2 624 358 324 37 0 chr12 5173980 5174088 -116083442 + RSINE1 SINE B4 3 114 -51 2 624 464 48 16 0 chr12 5174145 5174208 -116083322 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 624 304 339 107 17 chr12 5174448 5174625 -116082905 - L1MEg LINE L1 -4121 2045 1853 2 624 799 276 73 16 chr12 5174865 5175303 -116082227 - L1MEg LINE L1 -4686 1556 1094 2 624 782 209 8 0 chr12 5175339 5175473 -116082057 - B1_Mur1 SINE Alu -2 147 13 2 624 914 61 120 8 chr12 5175494 5175627 -116081903 - B1_Mus1 SINE Alu 0 148 1 2 624 1177 61 0 45 chr12 5175791 5175946 -116081584 + B1_Mus1 SINE Alu 1 148 0 2 624 234 148 0 0 chr12 5175949 5176003 -116081527 + (A)n Simple_repeat Simple_repeat 1 54 0 2 624 361 343 114 45 chr12 5176005 5176338 -116081192 - L1MEg LINE L1 -5326 916 561 2 624 205 357 47 34 chr12 5176777 5176925 -116080605 + MIRb SINE MIR 40 189 -79 2 624 761 124 93 0 chr12 5177373 5177502 -116080028 - URR1A DNA MER1_type -5 221 81 2 624 2184 120 0 63 chr12 5177847 5178194 -116079336 - ORR1A4 LTR MaLR -4 325 1 2 624 238 356 25 17 chr12 5178687 5178807 -116078723 - L2c LINE L2 -11 3376 3256 2 624 866 291 49 35 chr12 5179227 5179512 -116078018 + B4A SINE B4 4 292 0 2 624 1168 62 0 27 chr12 5179740 5179890 -116077640 - B1_Mus2 SINE Alu 0 147 2 2 624 825 278 161 34 chr12 5180053 5180377 -116077153 + MLT1A0 LTR MaLR 1 365 0 2 624 275 289 64 26 chr12 5181004 5181082 -116076448 + ID4_ SINE ID 1 81 -2 2 624 990 292 25 7 chr12 5181092 5181375 -116076155 + B4 SINE B4 3 290 -2 2 624 189 164 327 0 chr12 5184512 5184567 -116072963 + L3 LINE CR1 2345 2417 -2072 2 624 318 106 0 0 chr12 5184955 5185002 -116072528 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 624 757 124 0 21 chr12 5185270 5185410 -116072120 + (TCC)n Simple_repeat Simple_repeat 2 138 0 2 624 394 212 81 0 chr12 5185516 5185615 -116071915 + MIRb SINE MIR 111 217 -51 2 624 519 207 0 67 chr12 5187163 5187282 -116070248 + PB1D10 SINE Alu 5 115 -2 2 624 265 246 109 80 chr12 5187630 5187767 -116069763 + MIRb SINE MIR 36 176 -92 2 624 221 295 52 21 chr12 5191058 5191165 -116066365 - MIRc SINE MIR -47 215 111 2 624 2335 104 0 3 chr12 5191393 5191712 -116065818 - ORR1A3 LTR MaLR -8 318 1 2 624 389 282 52 17 chr12 5191877 5192050 -116065480 + RLTR15 LTR ERVK 44 222 -137 2 624 325 286 72 61 chr12 5192026 5192290 -116065240 + RLTR15 LTR ERVK 75 341 -18 2 624 408 20 0 0 chr12 5192828 5192877 -116064653 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 2 624 255 312 0 83 chr12 5193014 5193098 -116064432 - B3A SINE B2 -78 120 44 2 624 1013 150 14 0 chr12 5193122 5193269 -116064261 - B1_Mur3 SINE Alu 0 149 1 2 624 1055 124 215 0 chr12 5194130 5194316 -116063214 + URR1A DNA MER1_type 1 226 0 2 624 297 0 0 0 chr12 5195508 5195541 -116061989 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 624 360 0 0 0 chr12 5196322 5196362 -116061168 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 624 423 52 0 0 chr12 5197029 5197087 -116060443 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 624 810 128 30 0 chr12 5197635 5197768 -116059762 - URR1B DNA MER1_type 0 225 89 2 624 328 307 15 129 chr12 5197964 5198080 -116059450 - B3A SINE B2 -16 182 4 2 624 361 302 0 0 chr12 5198080 5198166 -116059364 - B4 SINE B4 -203 89 4 2 624 362 316 11 40 chr12 5198213 5198388 -116059142 + L1MB5 LINE L1 6003 6172 -2 2 624 286 129 32 0 chr12 5199553 5199615 -116057915 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 624 848 282 13 98 chr12 5199677 5199995 -116057535 - B4 SINE B4 0 292 2 2 624 546 324 104 27 chr12 5201357 5201579 -116055951 - MLT1C LTR MaLR -23 444 206 2 624 183 42 0 0 chr12 5202746 5202770 -116054760 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2 624 221 222 109 16 chr12 5203317 5203381 -116054149 - RSINE1 SINE B4 0 165 96 2 624 234 0 0 0 chr12 5204277 5204303 -116053227 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 624 253 314 31 47 chr12 5204351 5204478 -116053052 - L2c LINE L2 -6 3381 3257 2 624 235 233 78 135 chr12 5204603 5204737 -116052793 - MIRb SINE MIR -116 152 16 2 624 270 0 0 0 chr12 5204896 5204926 -116052604 + (TCC)n Simple_repeat Simple_repeat 2 31 0 2 624 246 313 61 0 chr12 5206286 5206385 -116051145 + MIR SINE MIR 140 244 -18 2 624 240 200 0 0 chr12 5206992 5207062 -116050468 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 624 222 91 0 0 chr12 5207577 5207610 -116049920 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 2 624 396 0 0 0 chr12 5208266 5208310 -116049220 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 624 697 337 113 29 chr12 5208590 5209006 -116048524 - MLT1L LTR MaLR -159 451 1 2 624 856 266 71 26 chr12 5209914 5210180 -116047350 + MamRep1161 DNA TcMar 1 278 -679 2 624 405 0 0 0 chr12 5210232 5210277 -116047253 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 624 665 257 0 13 chr12 5210483 5210622 -116046908 + B1F SINE Alu 2 139 -10 2 624 258 116 0 0 chr12 5210622 5210665 -116046865 + (CAAG)n Simple_repeat Simple_repeat 1 43 0 2 624 730 242 94 17 chr12 5212231 5212412 -116045118 - B4A SINE B4 -96 196 2 2 624 252 339 94 24 chr12 5212419 5212546 -116044984 - MIR SINE MIR -10 252 117 2 624 287 330 127 31 chr12 5213944 5214137 -116043393 - MIR3 SINE MIR -43 219 6 2 624 1282 134 114 0 chr12 5214414 5214616 -116042914 - URR1A DNA MER1_type 0 226 2 2 624 194 174 0 21 chr12 5215701 5215748 -116041782 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 624 315 314 155 13 chr12 5216019 5216174 -116041356 + HAL1-3A_ME LINE L1 2043 2219 -639 2 624 206 288 127 32 chr12 5217478 5217636 -116039894 - MIRc SINE MIR -30 238 66 2 624 275 333 85 8 chr12 5218577 5218707 -116038823 + L2 LINE L2 1890 2029 -1390 2 624 817 208 0 13 chr12 5219362 5219513 -116038017 + RSINE1 SINE B4 3 151 -14 2 624 24 32 0 0 chr12 5219539 5219570 -116037960 + AT_rich Low_complexity Low_complexity 1 31 0 2 624 293 238 73 24 chr12 5219622 5219704 -116037826 - B4 SINE B4 -50 242 157 2 624 180 77 0 0 chr12 5220250 5220276 -116037254 + (A)n Simple_repeat Simple_repeat 1 26 0 2 624 433 252 14 64 chr12 5220954 5221094 -116036436 + B1F SINE Alu 9 141 -8 2 624 414 0 0 0 chr12 5222915 5222961 -116034569 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 624 237 300 0 0 chr12 5224988 5225058 -116032472 - L1MA10 LINE L1 -19 6315 6246 2 624 359 232 49 120 chr12 5225681 5225823 -116031707 + ID_B1 SINE B4 93 224 0 3 624 761 95 67 25 chr12 5225705 5225824 -116031706 + B1_Mur4 SINE Alu 27 150 0 3 624 975 129 0 0 chr12 5226138 5226293 -116031237 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 3 624 23 0 0 0 chr12 5228200 5228223 -116029307 + AT_rich Low_complexity Low_complexity 1 23 0 3 624 609 171 14 14 chr12 5228889 5229031 -116028499 + CT-rich Low_complexity Low_complexity 3 144 0 3 624 245 271 178 0 chr12 5229947 5230054 -116027476 - ID_B1 SINE B4 -1 223 98 3 624 257 299 224 41 chr12 5231368 5231768 -116025762 + L2a LINE L2 2652 3172 -254 3 624 401 284 147 47 chr12 5231773 5231902 -116025628 - ID_B1 SINE B4 -2 222 81 3 624 253 277 31 0 chr12 5231904 5231969 -116025561 - MIR SINE MIR -168 94 28 3 624 285 333 73 15 chr12 5233159 5233296 -116024234 + MLT1K LTR MaLR 264 408 -40 3 624 217 214 17 35 chr12 5233342 5233400 -116024130 - MIR SINE MIR -67 141 85 3 624 1041 168 118 5 chr12 5234810 5235013 -116022517 + URR1A DNA MER1_type 1 226 0 3 624 255 347 8 31 chr12 5235157 5235285 -116022245 + (TCCA)n Simple_repeat Simple_repeat 1 125 0 3 624 417 274 108 12 chr12 5235735 5235901 -116021629 + MLT1K LTR MaLR 383 564 -31 3 624 324 189 122 0 chr12 5236266 5236356 -116021174 + MER3 DNA MER1_type 100 200 -9 3 624 276 130 0 0 chr12 5236666 5236712 -116020818 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 624 558 294 125 65 chr12 5237218 5237603 -116019927 + MLT1A1 LTR MaLR 1 408 0 3 624 441 95 0 0 chr12 5238204 5238267 -116019263 + (GGGGA)n Simple_repeat Simple_repeat 2 64 0 3 624 187 333 0 0 chr12 5238407 5238467 -116019063 + MER5A DNA MER1_type 7 66 -123 3 624 21 36 0 0 chr12 5239184 5239212 -116018318 + AT_rich Low_complexity Low_complexity 1 28 0 3 624 189 0 0 0 chr12 5239958 5239979 -116017551 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 624 342 0 0 0 chr12 5240862 5240900 -116016630 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 624 811 314 20 12 chr12 5240900 5241155 -116016375 - B4A SINE B4 -33 259 3 3 624 455 263 29 36 chr12 5241657 5241795 -116015735 - L1ME1 LINE L1 0 6179 6043 3 624 340 252 187 0 chr12 5242741 5242848 -116014682 + PB1 SINE Alu 1 127 0 3 625 351 0 0 0 chr12 5243427 5243466 -116014064 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 625 235 246 0 110 chr12 5244314 5244387 -116013143 - ID4_ SINE ID -16 67 3 3 625 378 236 76 76 chr12 5244397 5244516 -116013014 - B1F SINE Alu 0 149 31 3 625 218 81 27 0 chr12 5245959 5245996 -116011534 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 625 272 340 10 21 chr12 5246114 5246210 -116011320 - B4 SINE B4 -195 97 3 3 625 310 296 184 78 chr12 5247822 5248104 -116009426 + MLT1A1 LTR MaLR 2 313 -95 3 625 264 213 0 0 chr12 5248105 5248166 -116009364 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 625 228 189 40 0 chr12 5248153 5248227 -116009303 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 625 402 208 26 13 chr12 5248244 5248400 -116009130 + (TA)n Simple_repeat Simple_repeat 1 158 0 3 625 348 130 0 0 chr12 5250121 5250190 -116007340 + (TCTG)n Simple_repeat Simple_repeat 4 72 0 3 625 364 323 90 0 chr12 5250373 5250506 -116007024 - MER63A DNA AcHobo -54 156 12 3 625 1972 158 113 8 chr12 5250750 5251120 -116006410 + MTC LTR MaLR 1 409 -12 3 625 237 303 0 15 chr12 5253785 5253852 -116003678 + L2b LINE L2 3308 3373 -2 3 625 688 134 143 0 chr12 5254963 5255075 -116002455 + B1_Mus1 SINE Alu 11 138 -10 3 625 391 269 0 41 chr12 5255144 5255241 -116002289 + ID4_ SINE ID 6 98 -54 3 625 1136 90 12 24 chr12 5257323 5257493 -116000037 + URR1A DNA MER1_type 59 226 0 3 625 227 174 27 164 chr12 5258656 5258766 -115998764 + LTR40b LTR ERVL 343 437 -25 3 625 280 284 104 38 chr12 5259096 5259202 -115998328 - MIR SINE MIR -53 215 103 3 625 360 0 0 0 chr12 5259322 5259362 -115998168 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 3 625 204 121 30 0 chr12 5259391 5259424 -115998106 + GA-rich Low_complexity Low_complexity 3 36 0 3 625 279 303 37 92 chr12 5259425 5259719 -115997811 - RMER10A LTR ERVL -147 295 18 3 625 247 281 33 89 chr12 5260823 5260913 -115996617 + RSINE1 SINE B4 81 165 0 3 625 585 281 62 145 chr12 5261141 5261590 -115995940 + RMER10A LTR ERVL 12 423 -19 3 625 22 0 0 0 chr12 5261838 5261860 -115995670 + AT_rich Low_complexity Low_complexity 1 22 0 3 625 184 216 19 19 chr12 5262777 5262829 -115994701 - L2a LINE L2 0 3426 3375 3 625 486 0 0 0 chr12 5263272 5263326 -115994204 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 625 468 0 0 0 chr12 5263868 5263920 -115993610 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 625 25 0 0 0 chr12 5264391 5264416 -115993114 + GC_rich Low_complexity Low_complexity 1 25 0 3 625 317 298 48 41 chr12 5265302 5265449 -115992081 - MIR SINE MIR -10 252 105 3 625 511 307 183 17 chr12 5266261 5266496 -115991034 - B4A SINE B4 -18 274 1 3 625 298 355 83 0 chr12 5266650 5266771 -115990759 + MLT1C LTR MaLR 328 458 -9 3 625 216 0 0 0 chr12 5268277 5268301 -115989229 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 625 450 0 0 0 chr12 5268301 5268351 -115989179 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 625 328 318 124 13 chr12 5268683 5268836 -115988694 - MIR SINE MIR -42 220 51 3 625 2080 125 142 20 chr12 5269322 5269673 -115987857 + ORR1B1 LTR MaLR 1 394 0 3 625 590 339 43 73 chr12 5269683 5270011 -115987519 - ORR1E LTR MaLR -40 319 2 3 625 301 304 122 55 chr12 5270011 5270189 -115987341 + MLT1G LTR MaLR 374 563 -28 3 625 1291 28 0 0 chr12 5271793 5271938 -115985592 + B1_Mm SINE Alu 3 147 0 3 625 27 0 0 0 chr12 5271938 5271965 -115985565 + AT_rich Low_complexity Low_complexity 1 27 0 3 625 184 260 176 14 chr12 5274114 5274188 -115983342 - MIR3 SINE MIR -36 172 87 3 625 342 0 0 0 chr12 5274511 5274549 -115982981 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 625 361 290 18 61 chr12 5277697 5277811 -115979719 + PB1D7 SINE Alu 2 110 -10 3 625 294 29 0 0 chr12 5277821 5277856 -115979674 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 625 462 290 93 67 chr12 5277910 5278180 -115979350 - B4 SINE B4 -14 278 2 3 625 396 0 0 0 chr12 5279192 5279236 -115978294 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 625 270 0 0 0 chr12 5279236 5279265 -115978265 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 625 645 121 47 114 chr12 5279273 5279422 -115978108 - ORR1C2 LTR MaLR -234 150 12 3 625 483 347 20 10 chr12 5280414 5280609 -115976921 - MamRep564 Unknown Unknown -122 235 39 3 625 216 171 0 0 chr12 5283342 5283377 -115974153 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 625 198 352 79 8 chr12 5284244 5284370 -115973160 + MIRc SINE MIR 13 147 -121 3 625 614 228 18 0 chr12 5284407 5284521 -115973009 + B1_Mur1 SINE Alu 25 140 -9 3 625 332 0 47 0 chr12 5284522 5284565 -115972965 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 3 625 183 42 0 0 chr12 5285025 5285049 -115972481 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 3 625 228 185 167 0 chr12 5286065 5286119 -115971411 - RMER21A LTR ERV1 -267 680 618 3 625 605 97 0 10 chr12 5286147 5286201 -115971329 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 625 1620 0 0 0 chr12 5286201 5286381 -115971149 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 625 605 97 0 10 chr12 5286381 5286430 -115971100 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 625 351 0 0 0 chr12 5287534 5287573 -115969957 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 625 405 0 0 0 chr12 5287573 5287617 -115969913 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 625 708 189 111 0 chr12 5288192 5288345 -115969185 + L3b LINE CR1 182 351 -131 3 625 432 0 0 0 chr12 5288933 5288981 -115968549 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 625 214 275 124 62 chr12 5290350 5290447 -115967083 + MIRm SINE MIR 44 146 -130 3 625 411 308 0 0 chr12 5293136 5293243 -115964287 - PB1D10 SINE Alu -1 116 10 3 625 1295 98 49 0 chr12 5293431 5293615 -115963915 - B2_Mm2 SINE B2 -1 194 2 3 625 195 225 0 0 chr12 5294056 5294096 -115963434 + MER5B DNA MER1_type 78 117 -61 3 625 1212 111 116 0 chr12 5294735 5294933 -115962597 + URR1A DNA MER1_type 6 226 0 3 625 207 234 21 0 chr12 5297414 5297461 -115960069 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 3 625 541 143 0 35 chr12 5297722 5297838 -115959692 - L1Md_F2 LINE L1 0 6582 6471 3 625 468 0 0 0 chr12 5298253 5298305 -115959225 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 625 186 133 0 0 chr12 5299520 5299550 -115957980 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 3 625 517 363 88 21 chr12 5299550 5299972 -115957558 - L2a LINE L2 0 3426 2977 3 625 2619 238 154 20 chr12 5301426 5302261 -115955269 + Lx9 LINE L1 6697 7643 -1 3 625 358 316 120 0 chr12 5302378 5302511 -115955019 - B1_Mur2 SINE Alu 0 149 1 3 625 540 0 0 0 chr12 5303055 5303115 -115954415 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 625 245 305 67 45 chr12 5303875 5304009 -115953521 - MIRb SINE MIR -81 187 51 3 625 279 250 137 32 chr12 5304743 5304838 -115952692 + MLT1B LTR MaLR 4 108 -282 3 625 339 305 76 23 chr12 5304895 5305066 -115952464 + MLT1B LTR MaLR 210 389 -1 3 625 184 300 46 81 chr12 5305757 5305844 -115951686 + L2b LINE L2 3286 3369 -6 3 625 225 94 0 0 chr12 5305946 5305978 -115951552 + (A)n Simple_repeat Simple_repeat 1 32 0 4 625 198 326 20 40 chr12 5306093 5306192 -115951338 - MIRc SINE MIR -4 264 168 4 625 1497 142 0 4 chr12 5307224 5307450 -115950080 + URR1B DNA MER1_type 1 225 0 4 625 289 258 103 59 chr12 5307462 5307598 -115949932 + MIR SINE MIR 49 190 -72 4 625 320 200 0 0 chr12 5308097 5308157 -115949373 + ID4_ SINE ID 1 60 -23 4 625 198 0 0 0 chr12 5308205 5308227 -115949303 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 625 200 284 24 36 chr12 5308396 5308480 -115949050 - MIRb SINE MIR -165 103 21 4 625 536 293 70 67 chr12 5309600 5309885 -115947645 - LTR16C LTR ERVL -20 469 184 4 625 500 344 56 45 chr12 5310621 5310999 -115946531 - LTR16C LTR ERVL -10 479 98 4 625 23 68 0 0 chr12 5311999 5312043 -115945487 + AT_rich Low_complexity Low_complexity 1 44 0 4 625 252 0 0 0 chr12 5312051 5312079 -115945451 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 625 539 248 75 8 chr12 5312079 5312213 -115945317 - B3A SINE B2 -50 148 6 4 625 547 309 100 81 chr12 5312217 5312738 -115944792 + Kanga2_a DNA Tc2 316 846 -42 4 625 301 320 0 37 chr12 5312818 5312899 -115944631 - MIR3 SINE MIR -20 188 111 4 625 437 340 0 61 chr12 5314842 5315005 -115942525 - MER20 DNA MER1_type -44 175 23 4 625 237 329 12 12 chr12 5315063 5315146 -115942384 + L2b LINE L2 3281 3363 -12 4 625 198 330 32 32 chr12 5315447 5315541 -115941989 + L2 LINE L2 1987 2080 -1339 4 625 343 119 0 29 chr12 5315784 5315853 -115941677 + (TCC)n Simple_repeat Simple_repeat 3 69 0 4 625 1171 208 82 45 chr12 5316058 5316325 -115941205 + B4A SINE B4 15 291 -1 4 625 451 298 11 27 chr12 5316345 5316528 -115941002 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 625 599 319 47 38 chr12 5316575 5316787 -115940743 + B4 SINE B4 74 287 -5 4 625 428 35 17 0 chr12 5316852 5316910 -115940620 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 625 864 163 35 0 chr12 5317638 5317779 -115939751 + B1_Mur4 SINE Alu 5 150 0 4 625 255 377 119 30 chr12 5317808 5317942 -115939588 + MER58B DNA MER1_type 193 338 -3 4 625 213 294 0 0 chr12 5317958 5318009 -115939521 + L2b LINE L2 3373 3423 -3 4 625 700 272 61 22 chr12 5319925 5320190 -115937340 - MLT1B LTR MaLR -6 384 94 4 625 259 119 15 15 chr12 5320705 5320773 -115936757 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 4 625 687 165 0 0 chr12 5320814 5320947 -115936583 + (CA)n Simple_repeat Simple_repeat 2 134 0 4 625 23 54 0 0 chr12 5320947 5320984 -115936546 + AT_rich Low_complexity Low_complexity 1 37 0 4 625 243 0 0 0 chr12 5324035 5324062 -115933468 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 625 414 0 0 0 chr12 5324062 5324107 -115933423 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 625 251 318 47 12 chr12 5324213 5324299 -115933231 - MIRb SINE MIR -117 151 63 4 625 400 276 54 20 chr12 5324335 5324483 -115933047 + B4A SINE B4 2 154 -138 4 625 7347 63 4 1 chr12 5324483 5325388 -115932142 + L1_Mus1 LINE L1 5660 6567 0 4 625 332 364 60 8 chr12 5325405 5325538 -115931992 + B4A SINE B4 134 273 -19 4 625 203 368 11 0 chr12 5325548 5325635 -115931895 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 625 854 244 75 69 chr12 5325636 5325970 -115931560 + L1MB8 LINE L1 5833 6168 -10 4 625 342 246 174 79 chr12 5327090 5327280 -115930250 + MLT1H LTR MaLR 342 549 0 4 625 190 364 40 32 chr12 5328083 5328208 -115929322 + MIR SINE MIR 103 228 -34 4 625 530 337 80 50 chr12 5330477 5331179 -115926351 + L1MC4a LINE L1 5255 5977 -1905 4 625 414 0 0 0 chr12 5331335 5331381 -115926149 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 625 448 235 167 36 chr12 5331387 5331555 -115925975 + B3A SINE B2 2 191 -7 4 625 662 202 0 15 chr12 5332124 5332255 -115925275 + B1_Mur1 SINE Alu 3 131 -18 4 625 353 103 35 0 chr12 5332247 5332305 -115925225 + B1_Mus2 SINE Alu 64 123 -24 4 625 358 102 34 0 chr12 5332275 5332334 -115925196 + B1_Mur4 SINE Alu 66 126 -24 4 625 397 145 0 0 chr12 5332304 5332373 -115925157 + B1F SINE Alu 65 133 -16 4 625 435 167 0 25 chr12 5332363 5332443 -115925087 + B1_Mus2 SINE Alu 64 141 -6 4 625 503 230 30 0 chr12 5333376 5333476 -115924054 - PB1D7 SINE Alu -5 115 13 4 625 234 380 130 0 chr12 5333514 5333529 -115924001 + B4 SINE B4 70 98 -194 4 625 435 290 60 0 chr12 5333529 5333629 -115923901 + PB1D10 SINE Alu 1 106 -11 4 625 1191 308 92 11 chr12 5333929 5334375 -115923155 - MLT1D LTR MaLR 0 505 24 4 625 343 274 112 99 chr12 5334406 5334733 -115922797 + MLT1F LTR MaLR 128 556 -23 4 625 516 373 25 4 chr12 5334758 5335000 -115922530 - L4 LINE RTE -1185 844 598 4 625 392 300 122 57 chr12 5336189 5336525 -115921005 + Tigger15a DNA TcMar 243 600 -115 4 625 324 0 0 0 chr12 5336923 5336959 -115920571 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 625 531 272 120 62 chr12 5336989 5337248 -115920282 - B4 SINE B4 -17 275 2 4 625 1827 205 17 14 chr12 5338662 5339023 -115918507 - MTD LTR MaLR -57 362 1 4 625 432 296 126 48 chr12 5339131 5339440 -115918090 + L2a LINE L2 3094 3426 0 4 625 437 308 88 99 chr12 5339510 5339932 -115917598 + L1ME4a LINE L1 5708 6124 0 4 625 26 0 0 0 chr12 5340418 5340444 -115917086 + GC_rich Low_complexity Low_complexity 1 26 0 4 625 273 293 100 67 chr12 5341206 5341313 -115916217 + MER5A DNA MER1_type 1 118 -71 4 625 874 141 41 21 chr12 5341313 5341458 -115916072 + B1_Mur4 SINE Alu 3 150 0 4 625 273 293 100 67 chr12 5341458 5341500 -115916030 + MER5A DNA MER1_type 119 155 -34 4 625 1926 292 97 57 chr12 5344771 5345738 -115911792 - Charlie21a DNA MER1_type -17 1196 186 4 625 441 0 0 0 chr12 5345738 5345787 -115911743 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 625 1926 292 97 57 chr12 5345787 5345901 -115911629 - Charlie21a DNA MER1_type -1028 185 72 4 625 204 125 0 0 chr12 5346428 5346460 -115911070 + (TTAGGG)n Simple_repeat Simple_repeat 2 33 0 4 625 354 301 6 34 chr12 5347472 5347580 -115909950 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 4 625 189 121 0 0 chr12 5347580 5347613 -115909917 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 625 354 301 6 34 chr12 5347613 5347683 -115909847 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 4 625 2584 128 55 8 chr12 5347809 5348211 -115909319 + MTC LTR MaLR 1 421 0 4 625 305 113 0 40 chr12 5349504 5349578 -115907952 + A-rich Low_complexity Low_complexity 1 71 0 4 625 576 152 26 13 chr12 5349780 5349933 -115907597 + (CA)n Simple_repeat Simple_repeat 1 155 0 4 625 1231 41 7 0 chr12 5350456 5350602 -115906928 + B1_Mus2 SINE Alu 1 147 0 4 625 212 125 0 40 chr12 5350860 5350910 -115906620 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 625 2833 41 7 149 chr12 5351517 5351972 -115905558 + RLTR10 LTR ERVK 1 390 0 4 625 181 303 154 22 chr12 5352676 5352767 -115904763 - L2b LINE L2 -38 3337 3235 4 625 212 324 34 68 chr12 5353541 5353687 -115903843 + MIRc SINE MIR 40 180 -88 4 625 613 246 58 23 chr12 5354379 5354550 -115902980 + MLT1N2 LTR MaLR 383 559 -3 4 625 431 322 91 6 chr12 5355097 5355272 -115902258 - L3b LINE CR1 -242 240 51 4 625 1095 44 0 0 chr12 5355602 5355739 -115901791 + (GGA)n Simple_repeat Simple_repeat 2 138 0 4 625 387 327 63 56 chr12 5355949 5356218 -115901312 - B4 SINE B4 -19 273 3 4 625 525 188 10 30 chr12 5358932 5359031 -115898499 - RSINE1 SINE B4 -65 100 4 4 625 1134 88 0 7 chr12 5359095 5359243 -115898287 + B1_Mus1 SINE Alu 2 148 0 4 625 1064 197 23 36 chr12 5359443 5359664 -115897866 + URR1A DNA MER1_type 6 223 -3 4 625 1241 121 73 59 chr12 5359881 5360101 -115897429 - URR1B DNA MER1_type -1 224 2 4 625 1008 118 0 14 chr12 5361183 5361329 -115896201 + B1_Mus1 SINE Alu 4 147 -1 4 625 471 78 0 0 chr12 5361330 5361394 -115896136 + (GAAAA)n Simple_repeat Simple_repeat 3 66 0 4 625 616 324 138 59 chr12 5361587 5363104 -115894426 + L1ME4a LINE L1 4483 6118 -6 4 625 567 246 51 32 chr12 5363961 5364121 -115893409 + RSINE1 SINE B4 1 163 -2 4 625 813 49 0 0 chr12 5364862 5364964 -115892566 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 4 625 243 88 0 0 chr12 5366197 5366231 -115891299 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 4 625 522 143 0 0 chr12 5366412 5366503 -115891027 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 625 207 0 0 0 chr12 5367062 5367085 -115890445 + (A)n Simple_repeat Simple_repeat 1 23 0 4 625 408 40 0 0 chr12 5367097 5367147 -115890383 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 625 243 321 80 35 chr12 5368538 5368651 -115888879 + MamRep605 Unknown Unknown 396 513 -363 4 625 882 186 116 5 chr12 5369063 5369252 -115888278 + B3 SINE B2 2 211 -5 4 625 583 283 136 25 chr12 5369330 5369609 -115887921 - L1MB2 LINE L1 -52 6119 5810 4 625 1045 281 45 40 chr12 5369791 5370214 -115887316 - L1MB2 LINE L1 -442 5738 5314 4 625 216 0 0 0 chr12 5370580 5370604 -115886926 + (T)n Simple_repeat Simple_repeat 1 24 0 4 625 37 0 0 0 chr12 5372027 5372064 -115885466 + AT_rich Low_complexity Low_complexity 1 37 0 4 625 773 296 19 0 chr12 5372073 5372279 -115885251 - B3 SINE B2 -6 210 1 4 625 598 333 79 4 chr12 5372341 5372570 -115884960 - B4A SINE B4 -12 280 35 4 625 903 113 339 0 chr12 5373726 5373894 -115883636 + URR1B DNA MER1_type 1 225 0 4 626 216 0 0 0 chr12 5374726 5374750 -115882780 + (A)n Simple_repeat Simple_repeat 1 24 0 4 626 635 279 0 21 chr12 5375013 5375156 -115882374 + B1_Mur1 SINE Alu 1 140 -9 5 626 241 329 51 0 chr12 5375230 5375309 -115882221 + ID_B1 SINE B4 20 102 -122 5 626 387 0 0 0 chr12 5375309 5375352 -115882178 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 626 374 259 130 19 chr12 5375407 5375568 -115881962 + MIRb SINE MIR 84 262 0 5 626 189 318 71 26 chr12 5375540 5375653 -115881877 + L3 LINE CR1 4370 4487 -2 5 626 429 247 0 0 chr12 5376032 5376123 -115881407 - RSINE1 SINE B4 -58 107 17 5 626 880 145 7 0 chr12 5376123 5376268 -115881262 - URR1A DNA MER1_type 0 226 81 5 626 348 331 23 29 chr12 5376658 5376832 -115880698 + L1MB2 LINE L1 5621 5793 -396 5 626 630 234 0 0 chr12 5376832 5376986 -115880544 + (CATATA)n Simple_repeat Simple_repeat 5 158 0 5 626 745 299 82 3 chr12 5376986 5377341 -115880189 + L1MB2 LINE L1 5782 6164 -7 5 626 306 0 0 0 chr12 5378895 5378929 -115878601 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 626 183 204 0 0 chr12 5382077 5382126 -115875404 + CT-rich Low_complexity Low_complexity 1 49 0 5 626 22 70 0 0 chr12 5382272 5382315 -115875215 + GC_rich Low_complexity Low_complexity 1 43 0 5 626 204 158 0 0 chr12 5382419 5382457 -115875073 + (CGG)n Simple_repeat Simple_repeat 1 38 0 5 626 23 68 0 0 chr12 5382599 5382643 -115874887 + GC_rich Low_complexity Low_complexity 1 44 0 5 626 22 0 0 0 chr12 5383788 5383810 -115873720 + AT_rich Low_complexity Low_complexity 1 22 0 5 626 405 0 0 0 chr12 5384617 5384662 -115872868 + (T)n Simple_repeat Simple_repeat 1 45 0 5 626 457 237 0 123 chr12 5384935 5385065 -115872465 + MTD LTR MaLR 1 114 -305 5 626 1771 230 113 53 chr12 5385085 5385632 -115871898 + MTD-int LTR MaLR 679 1258 0 5 626 1664 212 82 6 chr12 5385663 5386028 -115871502 + MTD LTR MaLR 13 405 -14 5 626 203 333 75 43 chr12 5386736 5386830 -115870700 - MIRb SINE MIR -136 132 36 5 626 202 53 53 0 chr12 5386830 5386857 -115870673 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 626 618 39 0 0 chr12 5386857 5386934 -115870596 + (TGG)n Simple_repeat Simple_repeat 3 79 0 5 626 202 53 53 0 chr12 5386934 5386944 -115870586 + (TTG)n Simple_repeat Simple_repeat 3 13 0 5 626 223 244 0 0 chr12 5387377 5387422 -115870108 - MIRm SINE MIR -4 272 228 5 626 291 54 0 0 chr12 5388808 5388845 -115868685 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 5 626 940 297 62 64 chr12 5388848 5389319 -115868211 - Lx8 LINE L1 -8 7465 6996 5 626 825 178 125 88 chr12 5389332 5389404 -115868126 - URR1A DNA MER1_type -2 224 153 5 626 180 0 0 0 chr12 5389404 5389424 -115868106 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 626 825 178 125 88 chr12 5389424 5389567 -115867963 - URR1A DNA MER1_type -74 152 3 5 626 261 0 0 0 chr12 5391905 5391934 -115865596 + (TACTG)n Simple_repeat Simple_repeat 5 33 0 5 626 354 132 0 0 chr12 5392346 5392422 -115865108 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 626 606 53 42 10 chr12 5392619 5392715 -115864815 + Lx2 LINE L1 6899 6997 0 5 626 22 0 0 0 chr12 5392726 5392748 -115864782 + AT_rich Low_complexity Low_complexity 1 22 0 5 626 274 318 122 28 chr12 5393016 5393384 -115864146 - L2c LINE L2 -21 3405 2974 5 626 277 56 0 0 chr12 5393613 5393649 -115863881 + MLT1J1 LTR MaLR 60 95 -353 5 626 424 282 0 41 chr12 5393672 5393794 -115863736 + MLT1J1 LTR MaLR 58 174 -270 5 626 546 57 0 0 chr12 5393821 5393891 -115863639 + (TCC)n Simple_repeat Simple_repeat 2 71 0 5 626 181 371 65 76 chr12 5394275 5394707 -115862823 + L3 LINE CR1 2830 3256 -1233 5 626 1398 180 88 35 chr12 5394739 5395078 -115862452 + MTD LTR MaLR 1 357 -62 5 626 225 0 0 0 chr12 5395272 5395297 -115862233 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 626 542 321 61 5 chr12 5395299 5395512 -115862018 + MER2 DNA MER2_type 86 310 -35 5 626 2990 73 28 5 chr12 5396163 5396550 -115860980 + MTA_Mm LTR MaLR 1 396 0 5 626 509 336 75 43 chr12 5396987 5397360 -115860170 - MLT1D LTR MaLR -120 385 1 5 626 381 43 0 0 chr12 5399414 5399461 -115858069 + (TCCC)n Simple_repeat Simple_repeat 1 47 0 5 626 1462 265 135 19 chr12 5399462 5400084 -115857446 - Lx8 LINE L1 -61 7412 6719 5 626 309 273 68 27 chr12 5400213 5400360 -115857170 - L1MB7 LINE L1 0 6184 6032 5 626 486 0 0 0 chr12 5400773 5400827 -115856703 + (TTCTC)n Simple_repeat Simple_repeat 5 58 0 5 626 201 175 0 0 chr12 5400827 5400867 -115856663 + CT-rich Low_complexity Low_complexity 2 41 0 5 626 28 29 0 0 chr12 5400867 5400902 -115856628 + AT_rich Low_complexity Low_complexity 1 35 0 5 626 405 294 21 35 chr12 5401109 5401250 -115856280 + B1F2 SINE Alu 1 139 -10 5 626 368 215 0 0 chr12 5401267 5401332 -115856198 + ID4 SINE ID 2 66 -17 5 626 210 71 0 0 chr12 5401340 5401368 -115856162 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 5 626 1737 145 35 6 chr12 5401368 5401681 -115855849 + ORR1A4 LTR MaLR 1 322 -7 5 626 564 15 0 0 chr12 5401681 5401746 -115855784 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 626 195 69 0 0 chr12 5401864 5401893 -115855637 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 626 248 286 12 23 chr12 5402216 5402302 -115855228 - L1MB7 LINE L1 -239 5925 5841 5 626 538 202 108 8 chr12 5402324 5402454 -115855076 - B1F2 SINE Alu 0 149 7 5 626 857 321 61 32 chr12 5402601 5402945 -115854585 - ORR1E LTR MaLR -5 354 1 5 626 492 241 110 48 chr12 5402955 5403265 -115854265 - L1MEg LINE L1 -2746 3400 3072 5 626 349 208 189 0 chr12 5403338 5403444 -115854086 - B1F SINE Alu -11 138 13 5 626 506 298 40 50 chr12 5403513 5403711 -115853819 - B4A SINE B4 -16 276 81 5 626 867 291 147 78 chr12 5403717 5404527 -115853003 - L1MEg LINE L1 -3148 2998 2133 5 626 305 197 13 0 chr12 5404641 5404717 -115852813 + CT-rich Low_complexity Low_complexity 1 77 0 5 626 207 100 0 0 chr12 5404718 5404748 -115852782 + (T)n Simple_repeat Simple_repeat 1 30 0 5 626 479 282 54 36 chr12 5404861 5405137 -115852393 - L1MEg LINE L1 -4336 1906 1626 5 626 490 143 23 3 chr12 5405371 5405473 -115852057 - B1_Mur4 SINE Alu -27 120 19 5 626 831 117 0 53 chr12 5405790 5405980 -115851550 + CT-rich Low_complexity Low_complexity 1 180 0 5 626 480 289 168 75 chr12 5406047 5406672 -115850858 - L1MEg LINE L1 -5168 1074 392 5 626 566 290 10 10 chr12 5406908 5407089 -115850441 - L1MEg LINE L1 -5917 325 97 5 626 226 214 0 0 chr12 5407413 5407455 -115850075 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 626 338 364 77 16 chr12 5408061 5408307 -115849223 + LTR33A_ LTR ERVL 101 361 -170 5 626 203 400 53 8 chr12 5408574 5408705 -115848825 - L2b LINE L2 0 3375 3239 5 626 231 298 35 12 chr12 5408886 5408971 -115848559 + Tigger10 DNA Tigger 1706 1792 -51 5 626 501 97 0 0 chr12 5409873 5409945 -115847585 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 626 460 244 73 44 chr12 5414774 5414868 -115842662 - ID_B1 SINE B4 0 224 126 5 626 369 0 0 0 chr12 5414868 5414909 -115842621 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 626 460 244 73 44 chr12 5414909 5414951 -115842579 - ID_B1 SINE B4 -99 125 84 5 626 267 333 0 13 chr12 5415223 5415299 -115842231 - ID4 SINE ID -3 80 6 5 626 1516 201 92 30 chr12 5416067 5416503 -115841027 + L1MB8 LINE L1 5714 6176 -2 5 626 236 161 0 16 chr12 5417050 5417113 -115840417 + (CAAG)n Simple_repeat Simple_repeat 1 62 0 5 626 197 238 21 116 chr12 5418822 5418917 -115838613 + MIR SINE MIR 108 193 -69 5 626 215 241 0 18 chr12 5419613 5419668 -115837862 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 5 626 22 35 0 0 chr12 5419683 5419712 -115837818 + AT_rich Low_complexity Low_complexity 1 29 0 5 626 387 0 0 0 chr12 5419736 5419779 -115837751 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 626 189 0 0 0 chr12 5420144 5420165 -115837365 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 626 505 61 40 20 chr12 5420185 5420285 -115837245 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 5 626 782 229 80 26 chr12 5420612 5420933 -115836597 - MTD LTR MaLR -7 414 19 5 626 324 0 0 0 chr12 5421009 5421045 -115836485 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 626 243 170 0 0 chr12 5421322 5421369 -115836161 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 626 795 316 12 12 chr12 5421376 5421629 -115835901 - B4A SINE B4 -4 288 36 5 626 192 254 0 0 chr12 5422924 5422983 -115834547 + T-rich Low_complexity Low_complexity 1 59 0 5 626 843 200 208 19 chr12 5423623 5423927 -115833603 + MTD LTR MaLR 6 374 -45 5 626 393 293 52 73 chr12 5424276 5424508 -115833022 + ORR1E LTR MaLR 92 318 -41 5 626 23 33 0 0 chr12 5424514 5424544 -115832986 + AT_rich Low_complexity Low_complexity 1 30 0 5 626 210 193 0 0 chr12 5425012 5425069 -115832461 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 626 447 167 40 29 chr12 5425091 5425264 -115832266 + (TATG)n Simple_repeat Simple_repeat 4 178 0 5 626 509 277 27 7 chr12 5425322 5425471 -115832059 - B4A SINE B4 -20 272 121 5 626 479 221 82 48 chr12 5425490 5425637 -115831893 - B4A SINE B4 -140 152 1 5 626 198 0 0 0 chr12 5425862 5425884 -115831646 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 626 1291 205 127 42 chr12 5425885 5426354 -115831176 + MT2B LTR ERVL 6 600 -1 5 626 1043 284 7 41 chr12 5426471 5426765 -115830765 - B4A SINE B4 -8 284 1 5 626 418 305 29 18 chr12 5426858 5427028 -115830502 + MIRb SINE MIR 82 253 -15 5 626 791 181 15 0 chr12 5427436 5427569 -115829961 + B1_Mur3 SINE Alu 10 144 -5 5 626 761 308 90 22 chr12 5428094 5428462 -115829068 + LTR40a LTR ERVL 4 396 -123 5 626 402 21 0 0 chr12 5429616 5429663 -115827867 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 626 257 75 25 0 chr12 5429932 5429972 -115827558 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 5 626 210 263 64 26 chr12 5430025 5430103 -115827427 - L2a LINE L2 -49 3377 3297 5 626 504 32 0 0 chr12 5430293 5430355 -115827175 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 626 286 212 129 0 chr12 5431367 5431452 -115826078 - L1MA7 LINE L1 -1 6290 6195 5 626 453 214 0 0 chr12 5432164 5432253 -115825277 - PB1D10 SINE Alu -28 89 1 5 626 267 290 0 0 chr12 5432194 5432263 -115825267 - B4 SINE B4 -148 144 76 6 626 21 0 0 0 chr12 5432515 5432536 -115824994 + AT_rich Low_complexity Low_complexity 1 21 0 6 626 1167 62 7 0 chr12 5433176 5433322 -115824208 + B1_Mm SINE Alu 1 147 0 6 626 354 289 101 44 chr12 5433362 5433521 -115824009 + MIR3 SINE MIR 21 188 -20 6 626 2008 152 132 11 chr12 5433724 5434096 -115823434 + MTC LTR MaLR 5 421 0 6 626 190 320 51 0 chr12 5434292 5434370 -115823160 + MER5A DNA MER1_type 31 112 -77 6 626 557 264 3 12 chr12 5434726 5435144 -115822386 + (CA)n Simple_repeat Simple_repeat 1 414 0 6 626 344 233 53 98 chr12 5435188 5435321 -115822209 + Charlie4z DNA MER1_type 29 155 -12 6 626 426 233 10 0 chr12 5436543 5436646 -115820884 - L1M2 LINE L1 -2368 3775 3672 6 626 486 294 134 14 chr12 5436642 5436894 -115820636 + L1MA4 LINE L1 5309 5587 -593 6 626 215 103 26 0 chr12 5436985 5437024 -115820506 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 6 626 611 305 103 0 chr12 5437037 5437309 -115820221 + L1MA4 LINE L1 5639 5938 -362 6 626 29 28 0 0 chr12 5437624 5437660 -115819870 + AT_rich Low_complexity Low_complexity 1 36 0 6 626 649 302 0 0 chr12 5437689 5437848 -115819682 + RSINE1 SINE B4 4 162 -3 6 626 1444 71 38 0 chr12 5437892 5438076 -115819454 + B2_Mm2 SINE B2 1 191 -4 6 626 436 295 55 50 chr12 5438086 5438268 -115819262 + B3A SINE B2 2 184 -14 6 626 376 297 44 9 chr12 5438359 5438515 -115819015 + MIR SINE MIR 34 192 -76 6 626 21 0 0 0 chr12 5439525 5439546 -115817984 + AT_rich Low_complexity Low_complexity 1 21 0 6 626 780 11 0 0 chr12 5439887 5439976 -115817554 + (TTCTC)n Simple_repeat Simple_repeat 4 92 0 6 626 230 252 52 104 chr12 5440433 5440548 -115816982 + MLT1J2 LTR MaLR 337 445 -3 6 626 249 108 0 0 chr12 5441298 5441335 -115816195 + (A)n Simple_repeat Simple_repeat 1 37 0 6 626 29 0 0 0 chr12 5442203 5442232 -115815298 + AT_rich Low_complexity Low_complexity 1 29 0 6 626 620 115 137 16 chr12 5442235 5442359 -115815171 - B1_Mur4 SINE Alu 0 150 12 6 626 703 245 106 81 chr12 5442730 5443090 -115814440 - ORR1D1 LTR MaLR 0 374 6 6 626 309 308 66 0 chr12 5443917 5444008 -115813522 - MamRep1894 DNA hAT -26 97 1 6 626 1255 169 0 14 chr12 5444563 5444779 -115812751 + URR1B DNA MER1_type 1 213 -12 6 626 984 246 24 0 chr12 5445246 5445457 -115812073 + B3 SINE B2 1 216 0 6 626 982 270 119 37 chr12 5446202 5446277 -115811253 - RLTR20D LTR ERVK -6 499 420 6 626 426 20 0 0 chr12 5446277 5446328 -115811202 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 626 1495 214 36 22 chr12 5446328 5446713 -115810817 - RLTR20D LTR ERVK -86 419 1 6 626 816 281 46 31 chr12 5446730 5447079 -115810451 - ORR1E LTR MaLR -2 357 4 6 626 208 357 28 119 chr12 5447707 5447806 -115809724 - MIRb SINE MIR -23 245 146 6 626 666 302 13 58 chr12 5447806 5447843 -115809687 - B3 SINE B2 0 216 185 6 626 564 15 0 0 chr12 5447843 5447908 -115809622 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 626 666 302 13 58 chr12 5447908 5448095 -115809435 - B3 SINE B2 -32 184 2 6 626 208 357 28 119 chr12 5448095 5448246 -115809284 - MIRb SINE MIR -123 145 18 6 626 888 156 156 31 chr12 5448271 5448463 -115809067 - URR1B DNA MER1_type 0 225 10 6 626 867 231 5 59 chr12 5448881 5449102 -115808428 - B3 SINE B2 0 216 8 6 626 1475 224 91 9 chr12 5452231 5452573 -115804957 + RMER1B Other Other 43 412 -654 6 626 3611 215 90 9 chr12 5452574 5453637 -115803893 + RMER1B Other Other 2 1066 0 6 626 639 204 68 0 chr12 5453637 5453769 -115803761 - B1_Mur4 SINE Alu -9 141 1 6 626 351 0 0 0 chr12 5455176 5455215 -115802315 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 626 864 259 126 107 chr12 5455498 5455957 -115801573 + Lx8 LINE L1 6989 7456 -17 6 626 1782 165 111 8 chr12 5457045 5457423 -115800107 - MTD LTR MaLR -2 417 1 6 626 4217 200 15 7 chr12 5457526 5458404 -115799126 - Lx2B LINE L1 -135 6865 6024 6 626 388 321 51 47 chr12 5458458 5458693 -115798837 - MLT1A0 LTR MaLR -129 236 1 6 626 408 363 85 17 chr12 5458721 5459015 -115798515 - MER110A LTR ERV1 -77 391 78 6 626 501 344 124 28 chr12 5460433 5461013 -115796517 - MLT1A0-int LTR MaLR -367 1020 385 6 626 732 167 0 27 chr12 5461056 5461241 -115796289 + CT-rich Low_complexity Low_complexity 1 180 0 6 626 233 340 76 35 chr12 5461264 5461462 -115796068 - MLT1A0-int LTR MaLR -1150 237 32 6 626 977 120 23 0 chr12 5461726 5462069 -115795461 + (TG)n Simple_repeat Simple_repeat 1 351 0 6 626 857 308 84 104 chr12 5462866 5463201 -115794329 + Tigger7 DNA MER2_type 2132 2199 -292 6 626 2633 98 31 76 chr12 5463201 5463620 -115793910 + MTB LTR MaLR 1 400 0 6 626 857 213 59 120 chr12 5463620 5463839 -115793691 + Tigger7 DNA MER2_type 2200 2403 -88 6 626 207 0 0 0 chr12 5463839 5463862 -115793668 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 626 353 22 0 21 chr12 5463862 5463908 -115793622 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 626 857 213 59 120 chr12 5463908 5463956 -115793574 + Tigger7 DNA MER2_type 2404 2450 -41 6 626 758 221 13 0 chr12 5466454 5466608 -115790922 + RSINE1 SINE B4 3 158 -7 6 626 326 70 42 14 chr12 5466796 5466868 -115790662 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 626 225 275 0 42 chr12 5466869 5466941 -115790589 + A-rich Low_complexity Low_complexity 3 71 0 6 626 600 14 0 0 chr12 5466962 5467031 -115790499 + (GAGAA)n Simple_repeat Simple_repeat 5 73 0 6 626 399 329 25 25 chr12 5467170 5467329 -115790201 - MamRep564 Unknown Unknown -193 164 6 6 626 303 235 139 57 chr12 5468742 5468900 -115788630 - L1ME3A LINE L1 -178 5995 5825 6 626 270 272 16 73 chr12 5468925 5469049 -115788481 - L1ME3A LINE L1 -525 5715 5601 6 626 21 36 0 0 chr12 5469235 5469263 -115788267 + AT_rich Low_complexity Low_complexity 1 28 0 6 626 186 227 0 0 chr12 5469924 5469968 -115787562 + GA-rich Low_complexity Low_complexity 4 47 0 6 626 722 124 8 0 chr12 5469964 5470085 -115787445 + (GGA)n Simple_repeat Simple_repeat 3 124 0 6 626 630 0 0 0 chr12 5470190 5470260 -115787270 + (GAGAA)n Simple_repeat Simple_repeat 5 74 0 6 626 817 274 51 20 chr12 5470673 5470926 -115786604 - MLT1B LTR MaLR -1 389 129 6 626 423 0 0 0 chr12 5472195 5472242 -115785288 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 626 248 356 45 0 chr12 5472882 5473014 -115784516 + (CATG)n Simple_repeat Simple_repeat 3 140 0 6 626 546 113 0 0 chr12 5473030 5473127 -115784403 + (GA)n Simple_repeat Simple_repeat 1 97 0 6 626 493 292 168 30 chr12 5473400 5473963 -115783567 - L1MEe LINE L1 -3652 2494 1871 6 626 265 323 0 29 chr12 5474518 5474620 -115782910 - L1MEe LINE L1 -4707 1535 1403 6 626 8154 67 6 1 chr12 5475226 5476557 -115780973 - L1_Mus1 LINE L1 0 6567 5161 6 626 5581 111 6 1 chr12 5476554 5477354 -115780176 + L1_Mus1 LINE L1 4338 5141 -742 6 626 3404 213 32 88 chr12 5477498 5478410 -115779120 + Lx9 LINE L1 6765 7625 -19 6 626 207 0 0 0 chr12 5479190 5479213 -115778317 + (CTCTG)n Simple_repeat Simple_repeat 1 23 0 6 626 42 0 0 0 chr12 5479863 5479905 -115777625 + AT_rich Low_complexity Low_complexity 1 42 0 6 626 388 308 121 29 chr12 5481170 5481377 -115776153 - Tigger5 DNA MER2_type -2180 226 1 6 626 276 316 111 0 chr12 5481524 5481641 -115775889 + MIRb SINE MIR 122 251 -17 6 626 206 32 32 0 chr12 5482524 5482555 -115774975 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 626 1084 108 0 0 chr12 5482561 5482709 -115774821 - B1_Mus1 SINE Alu 0 148 1 6 626 602 230 283 13 chr12 5482787 5483091 -115774439 + MLT1B LTR MaLR 5 390 0 6 626 238 260 0 0 chr12 5484057 5484107 -115773423 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 626 301 322 0 11 chr12 5484236 5484330 -115773200 + CT-rich Low_complexity Low_complexity 3 95 0 6 626 267 299 148 60 chr12 5484636 5484853 -115772677 - LTR79 LTR ERVL -59 468 233 6 626 444 82 0 0 chr12 5485101 5485162 -115772368 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 626 241 349 67 90 chr12 5485383 5485729 -115771801 - L2c LINE L2 -2 3385 3048 6 626 38954 41 0 3 chr12 5485925 5492339 -115765191 - L1Md_T LINE L1 0 6585 94 6 626 399 147 0 0 chr12 5494428 5494496 -115763034 + Lx6 LINE L1 7389 7456 -4 6 626 614 64 17 43 chr12 5494638 5494753 -115762777 + (CAAAC)n Simple_repeat Simple_repeat 2 113 0 6 626 1199 61 0 0 chr12 5495027 5495174 -115762356 - B1_Mm SINE Alu 0 147 1 6 626 333 318 72 112 chr12 5495426 5495677 -115761853 - RMER13A LTR ERVK -43 817 577 6 626 1207 204 80 14 chr12 5495662 5495966 -115761564 - RMER13A LTR ERVK -542 366 1 6 626 411 21 0 0 chr12 5496462 5496510 -115761020 + (TTA)n Simple_repeat Simple_repeat 2 49 0 6 626 355 159 0 47 chr12 5497071 5497157 -115760373 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 6 626 763 198 6 30 chr12 5497139 5497473 -115760057 + (TATG)n Simple_repeat Simple_repeat 1 326 0 6 626 475 274 151 0 chr12 5497879 5498091 -115759439 - Kanga1 DNA Tc2 0 1745 1502 6 626 2323 105 9 12 chr12 5498552 5498880 -115758650 + ORR1A2 LTR MaLR 1 327 0 6 626 186 43 0 0 chr12 5499970 5499993 -115757537 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 6 626 506 16 16 0 chr12 5500397 5500460 -115757070 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 626 270 115 0 0 chr12 5500750 5500802 -115756728 + (A)n Simple_repeat Simple_repeat 1 52 0 2 626 356 245 9 0 chr12 5504176 5504282 -115753248 + GA-rich Low_complexity Low_complexity 3 109 0 3 627 485 156 0 10 chr12 5505425 5505522 -115752008 + (TCCA)n Simple_repeat Simple_repeat 2 97 0 4 627 326 295 171 51 chr12 5506107 5506330 -115751200 + MIR SINE MIR 7 239 -23 5 627 2847 49 8 3 chr12 5507041 5507406 -115750124 + L1_Mus2 LINE L1 6200 6566 0 6 627 251 304 84 108 chr12 5508301 5508515 -115749015 - MLT1C LTR MaLR -46 564 356 7 627 744 266 78 35 chr12 5511679 5511963 -115745567 - MLT1C LTR MaLR -168 299 4 7 627 326 305 40 63 chr12 5512772 5512947 -115744583 + MER45C DNA Tip100 1 171 -782 8 627 419 207 77 17 chr12 5513327 5513635 -115743895 + (ATGGTG)n Simple_repeat Simple_repeat 1 326 0 9 627 4113 90 7 9 chr12 5513937 5514507 -115743023 - L1_Mus4 LINE L1 -4 6632 6064 1 627 924 297 32 57 chr12 5515526 5515897 -115741633 - MLT1A0 LTR MaLR 0 365 4 1 627 6451 63 1 5 chr12 5517811 5518674 -115738856 - L1Md_F2 LINE L1 -5 6577 5718 1 627 11066 70 14 10 chr12 5518672 5520851 -115736679 - L1Md_F LINE L1 -3133 2750 562 1 627 442 359 136 48 chr12 5521107 5521631 -115735899 + L1MEc LINE L1 36 605 -5795 1 627 264 248 9 56 chr12 5521713 5521820 -115735710 + L1MEc LINE L1 688 789 -5611 1 627 181 188 29 14 chr12 5521872 5521942 -115735588 + (CAAT)n Simple_repeat Simple_repeat 2 72 0 1 627 198 0 0 0 chr12 5522094 5522116 -115735414 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 627 288 161 0 0 chr12 5522126 5522188 -115735342 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 627 625 185 35 55 chr12 5522312 5522512 -115735018 - Lx9 LINE L1 0 7644 7449 1 627 205 250 21 0 chr12 5522594 5522642 -115734888 + CT-rich Low_complexity Low_complexity 3 51 0 1 627 467 326 88 52 chr12 5522710 5523072 -115734458 + L1MEc LINE L1 1082 1456 -4944 1 627 289 335 10 5 chr12 5523108 5523306 -115734224 + L1MEc LINE L1 1544 1742 -4673 1 627 1747 195 0 3 chr12 5523389 5523697 -115733833 + Lx5 LINE L1 6744 7050 0 2 627 336 315 128 48 chr12 5523733 5523983 -115733547 + L1MEc LINE L1 1819 2088 -4312 1 627 1071 315 32 48 chr12 5524110 5524917 -115732613 + L1MEc LINE L1 2442 3235 -3084 1 627 288 333 105 30 chr12 5524980 5525113 -115732417 + MER58B DNA MER1_type 198 340 -1 2 627 219 370 0 0 chr12 5525327 5525340 -115732190 + ID SINE ID 69 81 -143 2 627 232 315 90 0 chr12 5525340 5525429 -115732101 + B1_Mus1 SINE Alu 1 97 -51 2 627 784 208 70 15 chr12 5525518 5525557 -115731973 - B3 SINE B2 -1 215 177 2 627 324 0 0 0 chr12 5525557 5525593 -115731937 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 627 784 208 70 15 chr12 5525593 5525753 -115731777 - B3 SINE B2 -40 176 6 2 627 606 322 66 35 chr12 5525763 5526602 -115730928 + L1ME2 LINE L1 4936 5800 -379 2 627 425 320 127 18 chr12 5526846 5527129 -115730401 + L1M4 LINE L1 2475 2788 -3358 2 627 241 284 76 38 chr12 5527186 5527475 -115730055 + L1M4 LINE L1 2901 3200 -2946 2 627 681 315 119 35 chr12 5527477 5528465 -115729065 + L1M4 LINE L1 3682 4752 -1394 2 627 393 22 0 0 chr12 5529210 5529256 -115728274 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 2 627 349 316 39 54 chr12 5529399 5529603 -115727927 + L1ME2 LINE L1 5964 6164 0 2 627 185 47 68 23 chr12 5529816 5529860 -115727670 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 627 1274 265 81 15 chr12 5529896 5530326 -115727204 - MLT2B1 LTR ERVL -21 533 21 3 627 1157 106 0 11 chr12 5530420 5530601 -115726929 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 3 627 531 310 21 69 chr12 5530619 5531035 -115726495 - L1M7 LINE L1 -4608 1635 1003 3 627 441 36 0 0 chr12 5531051 5531106 -115726424 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 627 261 227 25 74 chr12 5531111 5531192 -115726338 - ID4 SINE ID -3 80 4 3 627 270 0 0 0 chr12 5532262 5532292 -115725238 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 627 1141 280 124 15 chr12 5534137 5534849 -115722681 - L1ME1 LINE L1 -236 6116 5314 3 627 441 229 28 28 chr12 5534928 5535036 -115722494 - PB1D10 SINE Alu -1 116 9 3 627 382 361 66 68 chr12 5535082 5535302 -115722228 - L1ME1 LINE L1 -1167 5152 4924 3 627 607 260 21 53 chr12 5535302 5535489 -115722041 - B3A SINE B2 -15 183 3 3 627 382 361 66 68 chr12 5535489 5535693 -115721837 - L1ME1 LINE L1 -1396 4923 4729 3 627 348 127 0 0 chr12 5535781 5535836 -115721694 + (TTA)n Simple_repeat Simple_repeat 1 55 0 3 627 698 308 87 5 chr12 5535836 5536032 -115721498 - B4A SINE B4 -68 224 13 4 627 383 313 143 10 chr12 5536034 5536443 -115721087 - L1ME1 LINE L1 -1580 4739 4281 3 627 374 229 59 24 chr12 5536472 5536557 -115720973 - B1F SINE Alu -46 103 16 4 627 813 162 11 6 chr12 5536663 5536837 -115720693 + CT-rich Low_complexity Low_complexity 1 175 0 4 627 183 80 0 0 chr12 5536861 5536886 -115720644 + (TTCTCC)n Simple_repeat Simple_repeat 4 28 0 4 627 23 68 0 0 chr12 5536903 5536947 -115720583 + AT_rich Low_complexity Low_complexity 1 44 0 4 627 400 346 38 36 chr12 5537042 5537620 -115719910 - L1MA4A LINE L1 -192 5997 5412 4 627 538 280 141 71 chr12 5537785 5538461 -115719069 - L1MA4A LINE L1 -875 5268 4546 4 627 625 260 96 0 chr12 5538969 5539115 -115718415 - B3A SINE B2 -38 160 1 4 627 409 360 44 10 chr12 5539117 5539412 -115718118 - L1MD LINE L1 -2262 3884 3580 4 627 580 274 20 27 chr12 5539436 5539586 -115717944 - B1F SINE Alu 0 149 1 4 627 836 261 75 20 chr12 5539660 5540117 -115717413 - L1ME1 LINE L1 -2638 3681 3197 3 627 198 118 0 0 chr12 5540167 5540201 -115717329 + (TA)n Simple_repeat Simple_repeat 1 34 0 4 627 346 272 22 28 chr12 5540675 5540853 -115716677 - L1ME1 LINE L1 -3956 2444 2268 3 627 180 0 0 0 chr12 5540917 5540937 -115716593 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 627 807 251 98 122 chr12 5540958 5541033 -115716497 - B4A SINE B4 0 292 232 5 627 1490 37 21 0 chr12 5541033 5541223 -115716307 - L1Md_F3 LINE L1 0 6584 6391 5 627 807 251 98 122 chr12 5541223 5541405 -115716125 - B4A SINE B4 -61 231 41 5 627 1033 281 12 94 chr12 5541405 5541818 -115715712 - MTE2a LTR MaLR 0 379 1 5 627 807 251 98 122 chr12 5541818 5541854 -115715676 - B4A SINE B4 -252 40 5 5 627 334 324 23 58 chr12 5541964 5542139 -115715391 - MER58A DNA MER1_type -17 207 56 5 627 349 235 0 0 chr12 5542469 5542554 -115714976 - L1ME1 LINE L1 -4573 1842 1758 3 627 529 263 59 0 chr12 5542789 5542907 -115714623 - ID_B1 SINE B4 -7 217 93 5 627 211 145 31 31 chr12 5544412 5544476 -115713054 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 5 627 2009 301 75 94 chr12 5544626 5545065 -115712465 - L1M2 LINE L1 -10 5870 5439 5 627 5121 74 15 4 chr12 5545065 5545745 -115711785 - L1_Mus4 LINE L1 -3 6633 5947 5 627 2009 301 75 94 chr12 5545745 5545948 -115711582 - L1M2 LINE L1 -442 5438 5317 5 627 859 151 14 7 chr12 5545948 5546088 -115711442 - B1_Mur3 SINE Alu -7 142 2 5 627 3323 257 94 59 chr12 5546088 5547912 -115709618 - L1M2 LINE L1 -776 5367 3464 5 627 192 40 0 0 chr12 5548389 5548414 -115709116 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 627 1163 297 103 41 chr12 5549576 5550116 -115707414 - Lx8 LINE L1 -6 7467 6889 6 627 2609 93 163 16 chr12 5550116 5550551 -115706979 - RLTR44C LTR ERVK -2 500 2 6 627 1163 297 103 41 chr12 5550551 5550614 -115706916 - Lx8 LINE L1 -585 6888 6827 6 627 1585 303 91 10 chr12 5550679 5551362 -115706168 + Lx8 LINE L1 6100 6837 -636 6 627 240 292 83 0 chr12 5553578 5553698 -115703832 - L1M2 LINE L1 -409 5891 5762 6 627 1327 267 74 26 chr12 5553708 5554058 -115703472 - MTEa LTR MaLR -12 367 1 6 627 270 296 119 8 chr12 5554058 5554184 -115703346 - L1M2 LINE L1 -548 5749 5610 6 627 211 158 53 0 chr12 5554584 5554622 -115702908 - MIRm SINE MIR -12 264 225 6 627 280 260 140 88 chr12 5554588 5554702 -115702828 - MIRb SINE MIR -14 254 135 6 627 702 186 0 0 chr12 5557477 5557622 -115699908 + (TCCA)n Simple_repeat Simple_repeat 3 147 0 6 627 551 261 164 5 chr12 5557668 5557857 -115699673 + MLT1B LTR MaLR 1 219 -171 6 627 776 215 0 22 chr12 5557869 5558007 -115699523 + B1_Mur2 SINE Alu 2 136 -13 7 627 423 0 0 0 chr12 5559002 5559049 -115698481 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 627 383 327 140 31 chr12 5561369 5561691 -115695839 - ORR1E LTR MaLR 0 359 3 7 627 389 143 84 19 chr12 5561839 5561946 -115695584 + Lx3_Mus LINE L1 6896 7009 0 7 627 248 233 16 16 chr12 5561978 5562039 -115695491 - MTD LTR MaLR -358 61 1 7 627 251 202 0 19 chr12 5562398 5562470 -115695060 + ID4_ SINE ID 21 91 -61 7 627 207 108 0 110 chr12 5563100 5563173 -115694357 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 7 627 528 273 71 94 chr12 5563209 5563464 -115694066 - B4A SINE B4 -36 256 8 7 627 268 253 35 24 chr12 5564156 5564241 -115693289 + MTEb LTR MaLR 294 379 0 7 627 288 253 135 71 chr12 5565577 5565747 -115691783 - MER5A DNA MER1_type -5 184 4 7 627 676 303 0 0 chr12 5565884 5566062 -115691468 - B3 SINE B2 -38 178 1 8 627 540 0 0 0 chr12 5567377 5567437 -115690093 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 627 279 365 101 21 chr12 5568124 5568362 -115689168 - LTR33 LTR ERVL -15 500 244 8 627 321 373 118 60 chr12 5569480 5569999 -115687531 - MLT1G LTR MaLR 0 591 43 8 627 403 345 100 45 chr12 5570116 5570604 -115686926 + MLT1F LTR MaLR 9 529 -19 8 627 197 261 97 76 chr12 5570840 5570985 -115686545 + MIRb SINE MIR 103 250 -18 8 627 1046 167 47 19 chr12 5571204 5571417 -115686113 + URR1B DNA MER1_type 7 225 0 8 627 1501 227 61 13 chr12 5571537 5571930 -115685600 + MTD LTR MaLR 6 417 -2 8 627 231 250 14 29 chr12 5572281 5572351 -115685179 + CT-rich Low_complexity Low_complexity 3 71 0 8 627 616 54 21 0 chr12 5573506 5573599 -115683931 + (TC)n Simple_repeat Simple_repeat 2 96 0 8 627 264 100 0 0 chr12 5573626 5573666 -115683864 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 627 210 364 66 0 chr12 5573668 5573789 -115683741 - MER5A DNA MER1_type -55 134 6 9 627 425 127 0 12 chr12 5574275 5574355 -115683175 + (CA)n Simple_repeat Simple_repeat 2 80 0 9 627 381 320 97 6 chr12 5574452 5574628 -115682902 - RMER15 LTR ERVL -48 527 336 9 627 241 182 18 35 chr12 5574829 5574886 -115682644 + B1_Mus2 SINE Alu 79 134 -13 9 627 1022 126 0 6 chr12 5574887 5575055 -115682475 + (GAAA)n Simple_repeat Simple_repeat 1 167 0 9 627 293 269 11 54 chr12 5575236 5575421 -115682109 + (CATA)n Simple_repeat Simple_repeat 4 180 0 9 627 29 0 0 0 chr12 5576203 5576232 -115681298 + AT_rich Low_complexity Low_complexity 1 29 0 9 627 207 0 0 0 chr12 5576232 5576255 -115681275 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 9 627 2725 106 65 22 chr12 5576750 5577195 -115680335 - Lx LINE L1 -1 6653 6190 9 627 232 189 0 0 chr12 5577408 5577445 -115680085 - B1F SINE Alu -101 48 12 1 627 2424 158 5 5 chr12 5577446 5577854 -115679676 + MTC LTR MaLR 10 417 -4 1 627 1307 95 0 1 chr12 5577854 5578054 -115679476 + L1_Mus2 LINE L1 5819 6016 -551 1 627 432 0 0 0 chr12 5578058 5578106 -115679424 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 627 722 247 75 57 chr12 5578117 5578396 -115679134 + MTEb LTR MaLR 96 379 0 1 627 291 332 179 0 chr12 5578991 5579187 -115678343 + MLT1J1 LTR MaLR 206 436 -8 1 627 969 294 60 9 chr12 5581089 5581422 -115676108 + ORR1E LTR MaLR 4 353 -6 1 627 942 18 0 0 chr12 5581532 5581644 -115675886 + (TCCC)n Simple_repeat Simple_repeat 4 115 0 1 627 287 216 53 13 chr12 5581814 5581889 -115675641 - ID4_ SINE ID -3 80 3 1 627 1003 325 86 7 chr12 5582976 5583409 -115674121 - MLT1C LTR MaLR 0 467 1 1 627 198 0 0 0 chr12 5584970 5584992 -115672538 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 627 452 223 11 0 chr12 5586013 5586107 -115671423 - L2a LINE L2 -2 3424 3330 1 627 1163 278 62 25 chr12 5586170 5586528 -115671002 - MTEa LTR MaLR -8 371 1 1 627 432 0 0 0 chr12 5587411 5587459 -115670071 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 1 627 945 258 91 16 chr12 5589836 5590088 -115667442 - ORR1D2 LTR MaLR -13 357 87 1 627 281 213 52 26 chr12 5590150 5590227 -115667303 + L1_Rod LINE L1 5769 5847 0 1 627 180 200 0 0 chr12 5590266 5590306 -115667224 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 627 237 250 17 0 chr12 5590332 5590392 -115667138 + GA-rich Low_complexity Low_complexity 4 64 0 1 627 686 94 8 0 chr12 5590740 5590857 -115666673 + (CA)n Simple_repeat Simple_repeat 2 119 0 1 627 180 0 0 0 chr12 5590860 5590880 -115666650 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 627 262 284 48 29 chr12 5592241 5592346 -115665184 - MIR SINE MIR -7 255 149 1 627 338 234 37 0 chr12 5592831 5592938 -115664592 - MER34A LTR ERV1 -93 478 368 1 627 304 273 88 36 chr12 5593086 5593223 -115664307 - MER34A LTR ERV1 -427 144 1 1 627 279 342 64 25 chr12 5594487 5594691 -115662839 + MIR SINE MIR 5 216 -46 1 627 318 123 0 0 chr12 5595334 5595391 -115662139 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 627 287 150 0 16 chr12 5595390 5595451 -115662079 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 627 1624 299 73 11 chr12 5595554 5596213 -115661317 - L1ME2 LINE L1 -4 6160 5461 1 627 258 333 18 0 chr12 5597503 5597617 -115659913 - L1M4 LINE L1 -714 5470 5355 1 627 9142 55 2 8 chr12 5598599 5600481 -115657049 - L1Md_F2 LINE L1 0 6582 4711 1 627 814 319 87 38 chr12 5600870 5601812 -115655718 - L1MEf LINE L1 -4536 1664 677 1 627 24 0 0 0 chr12 5603655 5603679 -115653851 + AT_rich Low_complexity Low_complexity 1 24 0 1 627 786 256 43 19 chr12 5604099 5604125 -115653405 - B3 SINE B2 0 216 195 1 627 423 0 0 0 chr12 5604125 5604172 -115653358 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 627 786 256 43 19 chr12 5604172 5604356 -115653174 - B3 SINE B2 -22 194 3 1 627 300 111 0 0 chr12 5605135 5605180 -115652350 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 627 708 213 125 5 chr12 5605239 5605423 -115652107 - B3 SINE B2 -10 206 1 1 627 24 0 0 0 chr12 5605429 5605453 -115652077 + AT_rich Low_complexity Low_complexity 1 24 0 1 627 534 301 49 0 chr12 5605500 5605643 -115651887 - RSINE1 SINE B4 -1 164 15 1 627 870 10 0 0 chr12 5605649 5605748 -115651782 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 627 546 354 19 0 chr12 5605748 5605957 -115651573 - B4A SINE B4 -76 216 4 1 627 3718 64 2 17 chr12 5609351 5609830 -115647700 - L1_Mus2 LINE L1 0 6566 6095 1 627 4236 61 64 9 chr12 5609830 5610603 -115646927 + L1_Mus2 LINE L1 5277 6085 -481 1 627 783 123 0 0 chr12 5610714 5610868 -115646662 + (TC)n Simple_repeat Simple_repeat 2 155 0 1 627 3326 137 41 12 chr12 5611169 5611733 -115645797 + RMER4B LTR ERVK 1 580 -5 1 627 239 304 0 0 chr12 5611836 5611892 -115645638 + polypyrimidine Low_complexity Low_complexity 4 59 0 1 627 406 290 28 18 chr12 5611895 5612004 -115645526 - PB1D7 SINE Alu -6 114 5 1 627 309 252 238 25 chr12 5612004 5612017 -115645513 - ID_B1 SINE B4 -6 218 71 1 627 420 322 37 48 chr12 5612325 5612514 -115645016 + MER91B DNA Tip100 4 190 0 1 627 261 0 0 0 chr12 5613632 5613661 -115643869 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 627 306 0 0 0 chr12 5614855 5614889 -115642641 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1 627 207 176 0 0 chr12 5615749 5615783 -115641747 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 1 627 181 330 103 9 chr12 5616343 5616450 -115641080 + L3 LINE CR1 3671 3787 -702 1 627 579 345 72 8 chr12 5616812 5617175 -115640355 - L1MEf LINE L1 -3592 2554 2169 1 627 205 51 25 25 chr12 5617354 5617394 -115640136 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 627 447 207 111 8 chr12 5617401 5617518 -115640012 + MER20 DNA MER1_type 3 131 -88 1 627 411 319 104 63 chr12 5617702 5617923 -115639607 - L1MEf LINE L1 -4476 1766 1537 1 627 341 268 31 0 chr12 5617980 5618077 -115639453 - L1MEf LINE L1 -4671 1571 1472 1 627 9444 140 16 8 chr12 5618398 5620286 -115637244 - Lx2 LINE L1 0 6997 5217 1 627 377 314 124 20 chr12 5620271 5620521 -115637009 - L1MA9 LINE L1 -348 5964 5689 1 627 3459 37 5 0 chr12 5620582 5620965 -115636565 - IAPEY_LTR LTR ERVK 0 385 1 1 627 22293 45 4 6 chr12 5620965 5623677 -115633853 - IAPEy-int LTR ERVK 0 7513 4808 1 627 2895 137 10 23 chr12 5623681 5624360 -115633170 - IAPEy-int LTR ERVK -6455 1058 1 1 627 3459 37 5 0 chr12 5624360 5624743 -115632787 - IAPEY_LTR LTR ERVK 0 385 1 1 627 430 287 58 59 chr12 5624753 5625040 -115632490 - L1MA9 LINE L1 -699 5484 5197 1 627 482 191 169 23 chr12 5625143 5625320 -115632210 - Lx2B LINE L1 -719 6281 6079 1 627 3339 196 47 24 chr12 5625324 5626024 -115631506 + Lx2B LINE L1 6281 6996 -4 1 627 1195 296 115 40 chr12 5626256 5626760 -115630770 - L1ME1 LINE L1 -11 6168 5614 1 627 315 0 0 0 chr12 5626760 5626795 -115630735 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 627 1195 290 107 31 chr12 5626795 5627653 -115629877 - L1ME1 LINE L1 -566 5613 4708 1 627 324 231 32 21 chr12 5627882 5627975 -115629555 + MTEb LTR MaLR 272 365 -14 1 627 23 33 0 0 chr12 5628031 5628061 -115629469 + AT_rich Low_complexity Low_complexity 1 30 0 1 627 40170 25 2 4 chr12 5628208 5633764 -115623766 - L1Md_T LINE L1 0 6582 1054 1 627 682 24 0 0 chr12 5633764 5633847 -115623683 + L1Md_A LINE L1 6500 6582 0 1 627 303 221 45 55 chr12 5633866 5633976 -115623554 - L1ME1 LINE L1 -1731 4415 4307 1 627 815 174 7 34 chr12 5634332 5634481 -115623049 - B1_Mur3 SINE Alu 0 149 5 1 627 260 288 92 41 chr12 5634568 5634857 -115622673 - L1ME1 LINE L1 -5283 959 631 1 627 257 51 0 25 chr12 5634878 5634918 -115622612 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 627 574 276 48 67 chr12 5634945 5635155 -115622375 - B3A SINE B2 -10 206 1 1 78 1329 319 62 54 chr12 5635515 5636181 -115621349 - Lx9 LINE L1 -211 7433 6763 1 628 428 370 10 52 chr12 5636190 5636384 -115621146 - B4A SINE B4 -106 186 1 1 628 415 287 26 17 chr12 5637615 5637732 -115619798 + RMER10B LTR ERVL 269 386 -12 1 628 353 263 49 42 chr12 5638154 5638297 -115619233 + RMER15 LTR ERVL 2 145 -430 1 628 651 298 48 19 chr12 5638377 5638586 -115618944 + RMER15 LTR ERVL 346 560 -15 1 628 437 0 19 0 chr12 5639703 5639756 -115617774 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 628 521 345 98 31 chr12 5639756 5640082 -115617448 - ORR1E LTR MaLR -11 348 1 1 628 324 306 34 27 chr12 5641929 5642077 -115615453 + MIRc SINE MIR 102 250 -18 1 628 479 269 83 113 chr12 5643405 5643573 -115613957 - RSINE1 SINE B4 0 165 3 1 628 329 268 14 0 chr12 5643621 5643692 -115613838 - ID4_ SINE ID -11 72 1 1 628 936 153 0 0 chr12 5644911 5645081 -115612449 + (CA)n Simple_repeat Simple_repeat 2 171 0 1 628 310 305 69 0 chr12 5645440 5645571 -115611959 + Lx8 LINE L1 6918 7057 -416 1 628 247 318 81 12 chr12 5645719 5645805 -115611725 - PB1D10 SINE Alu -24 93 2 1 628 535 348 46 46 chr12 5646677 5647111 -115610419 + MER20B DNA MER1_type 227 660 -123 1 628 1087 52 0 0 chr12 5647164 5647299 -115610231 + B1_Mus1 SINE Alu 14 148 0 1 628 312 27 0 0 chr12 5647299 5647336 -115610194 + (A)n Simple_repeat Simple_repeat 1 37 0 1 628 677 312 84 30 chr12 5647358 5647788 -115609742 + MER20B DNA MER1_type 324 776 -7 1 628 475 276 107 86 chr12 5648097 5648434 -115609096 - MER2 DNA MER2_type -1 344 1 1 628 209 286 0 0 chr12 5648434 5648483 -115609047 + (CATA)n Simple_repeat Simple_repeat 3 51 0 1 628 230 333 47 16 chr12 5648764 5648892 -115608638 - L1MD3 LINE L1 -508 7534 7403 1 628 316 231 38 13 chr12 5649113 5649192 -115608338 - L1MD3 LINE L1 -1242 6753 6673 1 628 356 335 87 32 chr12 5651223 5651408 -115606122 - ORR1E LTR MaLR -158 201 7 1 628 244 190 0 33 chr12 5651595 5651655 -115605875 + T-rich Low_complexity Low_complexity 1 58 0 1 628 544 306 36 62 chr12 5653593 5653788 -115603742 + B4A SINE B4 85 274 -18 1 628 411 93 62 0 chr12 5653815 5653912 -115603618 + (TCTG)n Simple_repeat Simple_repeat 2 104 0 1 628 987 75 0 0 chr12 5655033 5655166 -115602364 + (TTTC)n Simple_repeat Simple_repeat 2 134 0 1 628 1138 67 0 7 chr12 5655169 5655305 -115602225 - B1_Mm SINE Alu -12 135 1 1 628 764 262 52 19 chr12 5655463 5655673 -115601857 + ID_B1 SINE B4 5 221 -3 1 628 283 260 10 20 chr12 5655686 5655788 -115601742 - L1MEc LINE L1 -3942 2458 2358 1 628 316 338 100 64 chr12 5655833 5655917 -115601613 - L1MD2 LINE L1 -65 6294 6205 1 628 1368 73 56 0 chr12 5655917 5656095 -115601435 + B2_Mm2 SINE B2 1 188 -7 1 628 316 338 100 64 chr12 5656095 5656291 -115601239 - L1MD2 LINE L1 -155 6204 6004 1 628 819 276 64 51 chr12 5656322 5656712 -115600818 - L1MC LINE L1 -2091 4055 3661 1 628 576 289 53 7 chr12 5656705 5657008 -115600522 - L1MEc LINE L1 -4011 2389 2073 1 628 265 325 112 28 chr12 5657047 5657262 -115600268 - L1MEc LINE L1 -6076 324 92 1 628 970 276 60 108 chr12 5657290 5657688 -115599842 + MTEa LTR MaLR 1 379 0 1 628 574 102 25 17 chr12 5659257 5659377 -115598153 + (CA)n Simple_repeat Simple_repeat 2 122 0 1 628 279 369 139 15 chr12 5659808 5660009 -115597521 + MLT1J2 LTR MaLR 107 332 -116 1 628 384 271 105 17 chr12 5660031 5660180 -115597350 + MLT1A LTR MaLR 6 167 -207 1 628 392 265 10 5 chr12 5660182 5660280 -115597250 + B4A SINE B4 1 95 -197 1 628 2656 180 115 8 chr12 5660298 5660959 -115596571 + MYSERV16_I-int LTR ERVK 1595 2326 0 1 628 3253 84 7 0 chr12 5660959 5661373 -115596157 + BGLII LTR ERVK 4 420 -1 1 628 614 224 130 56 chr12 5661391 5661552 -115595978 + B4A SINE B4 113 285 -7 1 628 241 345 23 0 chr12 5661652 5661739 -115595791 + MLT1A LTR MaLR 232 320 -70 1 628 261 270 11 33 chr12 5662574 5662666 -115594864 + CT-rich Low_complexity Low_complexity 1 90 0 2 628 7999 83 12 9 chr12 5663232 5664337 -115593193 - L1Md_F2 LINE L1 -1429 4454 3347 2 628 8048 79 11 55 chr12 5664335 5664684 -115592846 + L1Md_F2 LINE L1 4450 4737 -1146 2 628 401 0 20 0 chr12 5664684 5664733 -115592797 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 2 628 8048 79 11 55 chr12 5664733 5665572 -115591958 + L1Md_F2 LINE L1 4738 5586 -297 2 628 7877 81 9 2 chr12 5665573 5666558 -115590972 + L1Md_F2 LINE L1 5588 6579 -3 2 628 468 0 0 0 chr12 5666587 5666639 -115590891 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 628 2177 307 27 31 chr12 5666641 5667387 -115590143 - Lx7 LINE L1 -388 7308 6566 2 628 208 450 0 0 chr12 5668869 5668980 -115588550 - MIRc SINE MIR -118 150 40 2 628 291 216 0 0 chr12 5669034 5669085 -115588445 + tRNA-Leu-TTA tRNA tRNA 36 86 0 2 628 1295 235 139 124 chr12 5669091 5669141 -115588389 - MT2A LTR ERVL 0 533 488 2 628 423 0 0 0 chr12 5669141 5669188 -115588342 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 2 628 1295 235 139 124 chr12 5669188 5669662 -115587868 - MT2A LTR ERVL -46 487 1 2 628 425 138 0 0 chr12 5669662 5669727 -115587803 - MERVL_2A-int LTR ERVL 0 5761 5697 2 628 447 141 0 0 chr12 5669929 5670007 -115587523 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 628 976 258 115 15 chr12 5670202 5670533 -115586997 + Lx8 LINE L1 7079 7442 -31 2 628 1356 143 0 0 chr12 5670525 5670734 -115586796 - L1_Mm LINE L1 -1211 4672 4464 2 628 7151 114 24 30 chr12 5670734 5672472 -115585058 + Lx LINE L1 4925 6654 0 2 628 2865 252 59 32 chr12 5672819 5673634 -115583896 + RCHARR1 DNA MER1_type 1 837 -137 2 628 336 24 0 0 chr12 5673683 5673724 -115583806 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 2 628 207 284 44 44 chr12 5673789 5673903 -115583627 - MIRb SINE MIR -21 247 134 2 628 603 321 143 23 chr12 5674296 5674554 -115582976 + B4A SINE B4 1 289 -3 2 628 193 49 47 47 chr12 5676241 5676284 -115581246 + (TTTTTA)n Simple_repeat Simple_repeat 1 43 0 2 628 1637 232 176 13 chr12 5677393 5677860 -115579670 - RMER15 LTR ERVL 0 575 33 2 628 330 169 17 0 chr12 5677918 5677977 -115579553 - RMER15 LTR ERVL -515 60 1 2 628 373 285 116 78 chr12 5677977 5678282 -115579248 + MTEa LTR MaLR 26 374 -5 2 628 520 146 19 0 chr12 5678914 5679017 -115578513 + GA-rich Low_complexity Low_complexity 3 107 0 2 628 615 153 142 0 chr12 5680129 5680254 -115577276 + B1_Mus2 SINE Alu 1 144 -5 2 628 912 306 85 10 chr12 5681139 5681539 -115575991 - L3b LINE CR1 -24 458 29 2 628 2209 193 115 32 chr12 5682269 5682341 -115575189 - RLTR20B3 LTR ERVK -3 574 471 2 628 1056 30 0 0 chr12 5682341 5682473 -115575057 + (CA)n Simple_repeat Simple_repeat 2 133 0 2 628 2209 193 115 32 chr12 5682473 5682930 -115574600 - RLTR20B3 LTR ERVK -107 470 1 2 628 411 343 28 21 chr12 5683830 5683973 -115573557 + MLT1E3 LTR MaLR 214 357 -267 2 628 556 162 120 10 chr12 5684111 5684211 -115573319 + B3 SINE B2 1 111 -105 2 628 924 276 5 0 chr12 5684480 5684676 -115572854 + MLT1E3 LTR MaLR 428 624 0 2 628 2543 135 101 19 chr12 5684762 5685177 -115572353 - RLTR44B LTR ERVK 0 449 1 2 628 428 323 133 21 chr12 5685626 5685866 -115571664 + MLT1A0 LTR MaLR 71 337 -28 2 628 1010 88 7 0 chr12 5685963 5686110 -115571420 + (GAAA)n Simple_repeat Simple_repeat 1 148 0 2 628 495 16 0 0 chr12 5686129 5686191 -115571339 + B1_Mm SINE Alu 86 147 0 2 628 1354 234 56 51 chr12 5686632 5687005 -115570525 + MTEb LTR MaLR 1 375 -4 2 628 234 156 0 0 chr12 5687715 5687760 -115569770 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 628 423 0 0 0 chr12 5687839 5687886 -115569644 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 628 1332 269 59 31 chr12 5689435 5689792 -115567738 - MTEb LTR MaLR -8 371 5 2 628 313 293 219 34 chr12 5690062 5690359 -115567171 + L3 LINE CR1 3484 3835 -654 2 628 234 260 198 19 chr12 5690398 5690504 -115567026 - L2a LINE L2 0 3426 3302 2 628 230 176 0 19 chr12 5692120 5692172 -115565358 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 2 628 435 389 65 41 chr12 5692594 5692884 -115564646 - MLT1N2 LTR MaLR -255 307 11 2 628 191 337 36 12 chr12 5692969 5693053 -115564477 - L2a LINE L2 -534 2885 2800 2 628 244 220 50 17 chr12 5693325 5693385 -115564145 + PB1D10 SINE Alu 39 100 -17 2 628 473 302 76 24 chr12 5693680 5693890 -115563640 - MER58A DNA MER1_type 0 224 4 2 628 264 340 100 10 chr12 5694079 5694254 -115563276 - MIRc SINE MIR -69 199 10 2 628 1960 46 0 0 chr12 5694742 5694979 -115562551 + L1Md_A LINE L1 6302 6538 -44 2 628 1169 134 154 5 chr12 5695185 5695380 -115562150 - URR1A DNA MER1_type -1 225 2 2 628 487 335 11 38 chr12 5695679 5695865 -115561665 + LTR40a LTR ERVL 339 519 0 2 628 504 29 15 0 chr12 5696991 5697059 -115560471 + L1Md_F2 LINE L1 6513 6581 -1 2 628 237 132 0 0 chr12 5697069 5697107 -115560423 + (A)n Simple_repeat Simple_repeat 1 38 0 2 628 384 22 0 0 chr12 5698348 5698393 -115559137 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 628 594 0 0 0 chr12 5698696 5698762 -115558768 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 628 7868 80 9 10 chr12 5699443 5701096 -115556434 + L1_Mus3 LINE L1 4987 6637 -1 2 628 310 327 0 0 chr12 5701179 5701265 -115556265 + MTEb LTR MaLR 5 90 -289 2 628 818 215 38 0 chr12 5701293 5701479 -115556051 + MTEb LTR MaLR 187 379 0 2 628 306 0 0 0 chr12 5701843 5701877 -115555653 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 628 804 199 33 43 chr12 5702744 5702928 -115554602 - URR1A DNA MER1_type 0 226 45 2 628 1078 316 117 31 chr12 5703300 5704218 -115553312 + L1MB5 LINE L1 4903 5938 -236 2 628 25 31 0 0 chr12 5704581 5704613 -115552917 + AT_rich Low_complexity Low_complexity 1 32 0 2 628 1249 221 130 46 chr12 5707302 5707398 -115550132 + MTE2a LTR MaLR 4 131 -248 2 628 3455 72 7 0 chr12 5707398 5707816 -115549714 - BGLII LTR ERVK 0 421 1 2 628 1249 221 130 46 chr12 5707816 5708066 -115549464 + MTE2a LTR MaLR 132 379 0 2 628 317 369 111 6 chr12 5708395 5708575 -115548955 - MIR SINE MIR -26 236 38 2 628 869 55 106 99 chr12 5710334 5710475 -115547055 + B1_Mus1 SINE Alu 2 143 -5 2 628 383 297 130 26 chr12 5710838 5711108 -115546422 + L1MCa LINE L1 515 812 -5233 2 628 432 55 0 0 chr12 5711123 5711178 -115546352 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 2 628 264 196 0 0 chr12 5711342 5711393 -115546137 + L1MCa LINE L1 1193 1243 -5508 2 628 246 308 72 40 chr12 5711368 5711493 -115546037 - Lx8 LINE L1 -821 6652 6524 2 628 1059 88 0 0 chr12 5711493 5711641 -115545889 + (TTTC)n Simple_repeat Simple_repeat 1 148 0 2 628 1773 286 130 8 chr12 5711788 5712705 -115544825 + L1MCa LINE L1 2397 3418 -3146 2 628 342 0 0 0 chr12 5712705 5712743 -115544787 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 628 1773 276 132 4 chr12 5712743 5712942 -115544588 + L1MCa LINE L1 3401 3657 -2907 2 628 228 111 0 0 chr12 5712976 5713012 -115544518 + (GGGAGA)n Simple_repeat Simple_repeat 2 37 0 2 628 450 347 28 62 chr12 5713095 5713273 -115544257 - B3A SINE B2 -22 176 5 2 628 243 343 59 77 chr12 5713359 5713580 -115543950 - RMER1C Other Other -17 1325 1109 2 628 2548 337 25 30 chr12 5713522 5714408 -115543122 - Lx8 LINE L1 -195 7278 6398 2 628 1222 61 7 0 chr12 5714408 5714555 -115542975 - B1_Mus1 SINE Alu 0 148 1 2 628 2548 337 25 30 chr12 5714555 5714693 -115542837 - Lx8 LINE L1 -1076 6397 6259 2 628 484 294 139 67 chr12 5714696 5714778 -115542752 + L1MCa LINE L1 3821 3914 -2650 2 628 6927 86 5 6 chr12 5714778 5715672 -115541858 - L1_Mus3 LINE L1 -1 6637 5745 2 628 484 294 139 67 chr12 5715672 5715898 -115541632 + L1MCa LINE L1 3915 4159 -2405 2 628 4973 78 5 8 chr12 5715898 5716519 -115541011 + L1_Mus1 LINE L1 5949 6567 0 2 628 484 294 139 67 chr12 5716519 5716669 -115540861 + L1MCa LINE L1 4160 4313 -2251 2 628 476 280 120 0 chr12 5719773 5719923 -115537607 - MLT1B LTR MaLR 0 390 223 2 628 438 20 0 0 chr12 5719952 5720003 -115537527 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 628 472 340 25 12 chr12 5720021 5720182 -115537348 - RSINE1 SINE B4 -2 163 1 2 628 660 270 85 9 chr12 5720318 5720542 -115536988 - MLT1B LTR MaLR -144 246 6 2 628 251 350 20 20 chr12 5720610 5720709 -115536821 - MIR SINE MIR -131 131 33 2 628 384 22 0 0 chr12 5720834 5720879 -115536651 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 628 1403 177 233 3 chr12 5721882 5722183 -115535347 + ORR1D1 LTR MaLR 1 370 -4 2 628 5608 5 0 0 chr12 5723842 5724453 -115533077 + L1Md_A LINE L1 5972 6582 0 2 628 227 353 47 10 chr12 5724808 5725000 -115532530 + MIR SINE MIR 49 247 -15 2 628 291 54 0 0 chr12 5725575 5725612 -115531918 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2 628 250 284 71 92 chr12 5727689 5727929 -115529601 - L1M5 LINE L1 -479 5762 5528 2 628 387 0 0 0 chr12 5727967 5728010 -115529520 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 628 272 148 0 16 chr12 5728010 5728072 -115529458 + GA-rich Low_complexity Low_complexity 2 62 0 2 628 386 323 136 12 chr12 5728108 5728142 -115529388 - Lx8 LINE L1 -204 7269 7231 2 628 477 0 0 0 chr12 5728142 5728195 -115529335 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 628 386 331 120 13 chr12 5728195 5728350 -115529180 - Lx8 LINE L1 -243 7230 7047 2 628 273 319 27 32 chr12 5728349 5728530 -115529000 - L1M5 LINE L1 -987 5227 5047 2 628 312 70 0 0 chr12 5728530 5728573 -115528957 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 628 534 307 228 42 chr12 5728573 5728788 -115528742 - L1M5 LINE L1 -1168 5046 4792 2 628 276 200 103 21 chr12 5728779 5728876 -115528654 - L1M5 LINE L1 -3802 2413 2309 2 628 276 316 0 0 chr12 5728871 5728950 -115528580 - L1MEg1 LINE L1 -5895 340 262 2 628 501 240 28 34 chr12 5729207 5729384 -115528146 + L1M5 LINE L1 3840 4015 -2131 2 628 359 314 108 35 chr12 5729483 5729770 -115527760 - L1MA5 LINE L1 -127 6173 5866 2 628 221 255 0 0 chr12 5729916 5729967 -115527563 + (CATA)n Simple_repeat Simple_repeat 1 51 0 2 628 838 252 0 57 chr12 5730469 5730696 -115526834 + B3 SINE B2 2 215 -1 2 628 442 117 0 0 chr12 5731127 5731187 -115526343 + (GGGA)n Simple_repeat Simple_repeat 4 63 0 2 628 939 154 0 0 chr12 5731187 5731356 -115526174 + GA-rich Low_complexity Low_complexity 4 172 0 2 628 376 302 39 120 chr12 5731670 5731817 -115525713 + ID_B1 SINE B4 5 152 -72 2 628 1252 27 0 20 chr12 5731817 5731967 -115525563 + B1_Mm SINE Alu 1 147 0 2 628 376 302 39 120 chr12 5731967 5732052 -115525478 + ID_B1 SINE B4 153 218 -6 2 628 2333 158 74 2 chr12 5732129 5732522 -115525008 + MTC LTR MaLR 1 421 0 2 628 279 0 0 0 chr12 5732567 5732598 -115524932 + (T)n Simple_repeat Simple_repeat 1 31 0 2 628 432 37 0 0 chr12 5733197 5733251 -115524279 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 628 636 257 6 16 chr12 5735543 5735728 -115521802 - Lx9 LINE L1 -594 7050 6796 2 628 859 273 160 35 chr12 5735737 5735965 -115521565 + Lx9 LINE L1 7090 7342 -302 2 628 614 13 13 0 chr12 5735965 5736040 -115521490 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 628 859 273 160 35 chr12 5736040 5736186 -115521344 + Lx9 LINE L1 7343 7509 -135 2 628 285 51 0 0 chr12 5736186 5736225 -115521305 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 628 5770 34 30 6 chr12 5736225 5736915 -115520615 + L1Md_F3 LINE L1 5878 6584 0 3 628 859 273 160 35 chr12 5736915 5736963 -115520567 + Lx9 LINE L1 7510 7565 -79 2 628 199 200 0 57 chr12 5737779 5737832 -115519698 - L2c LINE L2 -3 3384 3335 3 628 265 69 86 0 chr12 5738580 5738638 -115518892 + L1_Mus3 LINE L1 6575 6637 -1 3 628 796 277 65 43 chr12 5739147 5739377 -115518153 + B4 SINE B4 58 292 0 3 628 258 277 0 0 chr12 5739377 5739393 -115518137 + (CA)n Simple_repeat Simple_repeat 1 16 0 3 628 312 27 0 0 chr12 5739393 5739430 -115518100 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 628 258 277 0 0 chr12 5739430 5739478 -115518052 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 628 1415 185 120 88 chr12 5739586 5740018 -115517512 - RLTR41 LTR ERV1 0 446 1 3 628 339 272 0 0 chr12 5740909 5741023 -115516507 + CT-rich Low_complexity Low_complexity 1 114 0 3 628 424 244 169 8 chr12 5741023 5741147 -115516383 - B1_Mur1 SINE Alu -5 144 1 3 628 23 0 0 0 chr12 5741667 5741690 -115515840 + AT_rich Low_complexity Low_complexity 1 23 0 3 628 219 69 0 0 chr12 5742038 5742067 -115515463 + (A)n Simple_repeat Simple_repeat 1 29 0 3 628 518 295 113 24 chr12 5743016 5743308 -115514222 - MLT1B LTR MaLR -5 385 68 3 628 521 318 39 15 chr12 5744173 5744377 -115513153 + B4 SINE B4 84 292 0 3 628 600 14 0 0 chr12 5744583 5744652 -115512878 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 3 628 1038 111 169 26 chr12 5744970 5745165 -115512365 + URR1B DNA MER1_type 2 224 -1 3 628 997 128 116 6 chr12 5745861 5746042 -115511488 + URR1A DNA MER1_type 3 203 -23 3 628 7805 111 36 20 chr12 5746042 5746586 -115510944 + Lx4A LINE L1 5599 6170 -888 3 628 3937 76 8 14 chr12 5746586 5747092 -115510438 - RLTR1C LTR ERV1 0 503 1 3 628 7805 111 36 20 chr12 5747092 5747720 -115509810 + Lx4A LINE L1 6171 6789 -269 3 628 8809 22 1 2 chr12 5747720 5748856 -115508674 - L1Md_T LINE L1 0 6582 5448 3 628 1159 160 0 6 chr12 5748842 5749024 -115508506 + Lx4A LINE L1 6775 6955 -103 3 628 585 162 0 9 chr12 5749359 5749471 -115508059 + Lx4A LINE L1 6948 7058 0 3 628 204 40 0 0 chr12 5749549 5749574 -115507956 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 628 439 245 155 68 chr12 5749575 5749781 -115507749 - B4A SINE B4 0 292 69 3 628 615 289 127 15 chr12 5751447 5751515 -115506015 + B4 SINE B4 2 84 -208 3 628 756 61 0 0 chr12 5751515 5751613 -115505917 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 3 628 615 289 127 15 chr12 5751613 5751741 -115505789 + B4 SINE B4 85 220 -72 3 628 450 53 0 0 chr12 5751784 5751841 -115505689 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 628 299 321 19 9 chr12 5753037 5753144 -115504386 - PB1D7 SINE Alu -8 112 5 3 628 721 270 70 4 chr12 5755275 5755517 -115502013 + RMER15 LTR ERVL 318 575 0 3 628 627 14 0 0 chr12 5756334 5756406 -115501124 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 3 628 292 300 0 0 chr12 5757726 5757806 -115499724 - L1MC2 LINE L1 -13 6331 6252 3 628 278 302 104 0 chr12 5757919 5758015 -115499515 + PB1D10 SINE Alu 4 109 -8 3 628 291 335 49 136 chr12 5758032 5758340 -115499190 + B4A SINE B4 10 290 -2 3 628 231 114 0 0 chr12 5758410 5758445 -115499085 + (A)n Simple_repeat Simple_repeat 1 35 0 3 628 679 316 67 19 chr12 5758784 5759216 -115498314 - L2 LINE L2 -711 2708 2256 3 628 181 329 88 66 chr12 5759683 5759865 -115497665 + MIRb SINE MIR 78 263 -5 3 628 471 334 105 63 chr12 5761129 5761634 -115495896 - MT2A LTR ERVL 0 533 8 3 628 900 291 116 39 chr12 5761842 5762190 -115495340 - L1MB5 LINE L1 -36 6138 5773 3 628 306 0 0 0 chr12 5762190 5762224 -115495306 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 3 628 900 291 116 39 chr12 5762224 5762436 -115495094 - L1MB5 LINE L1 -402 5772 5535 3 628 1366 121 5 0 chr12 5762761 5762967 -115494563 - URR1A DNA MER1_type 0 226 20 3 628 961 308 15 18 chr12 5763037 5763389 -115494141 - L1MA5A LINE L1 -408 5889 5560 3 628 430 191 11 11 chr12 5763390 5763485 -115494045 - URR1A DNA MER1_type -25 201 107 3 628 456 139 23 47 chr12 5764506 5764634 -115492896 + RMER17C LTR ERVK 151 275 -135 3 628 244 175 80 61 chr12 5765182 5765258 -115492272 - B1F1 SINE Alu -41 108 24 3 628 390 129 0 0 chr12 5765262 5765324 -115492206 + (T)n Simple_repeat Simple_repeat 1 62 0 3 628 1218 62 0 0 chr12 5765324 5765470 -115492060 - B1_Mus2 SINE Alu 0 147 2 3 628 223 234 0 0 chr12 5767027 5767074 -115490456 + G-rich Low_complexity Low_complexity 2 48 0 3 629 351 216 0 13 chr12 5767429 5767504 -115490026 - ID4_ SINE ID -9 74 1 3 629 24 0 0 0 chr12 5767552 5767576 -115489954 + AT_rich Low_complexity Low_complexity 1 24 0 3 629 555 286 45 94 chr12 5767806 5768072 -115489458 - MLT1B LTR MaLR -137 253 1 3 629 518 281 11 63 chr12 5769596 5769771 -115487759 - ID_B1 SINE B4 -9 215 50 3 629 24 53 0 0 chr12 5769942 5769980 -115487550 + AT_rich Low_complexity Low_complexity 1 38 0 3 629 404 366 20 10 chr12 5772590 5772786 -115484744 + MIR SINE MIR 8 205 -57 3 629 605 269 0 0 chr12 5772958 5773077 -115484453 + ID_B1 SINE B4 98 216 -8 3 629 259 287 73 52 chr12 5772962 5773098 -115484432 - YREP_Mm Unknown Unknown -1516 296 158 3 629 351 357 89 34 chr12 5773233 5773468 -115484062 + MLT1A1 LTR MaLR 81 328 -80 3 629 370 302 86 0 chr12 5773593 5773755 -115483775 - L1ME3B LINE L1 -403 5837 5662 3 629 273 248 15 50 chr12 5773775 5773917 -115483613 - B3 SINE B2 0 216 59 3 629 374 292 186 16 chr12 5773970 5774287 -115483243 - L1ME3B LINE L1 -545 5628 5258 3 629 385 339 0 33 chr12 5774769 5774952 -115482578 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 3 629 383 346 6 16 chr12 5774909 5775091 -115482439 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 629 417 327 6 6 chr12 5775022 5775179 -115482351 + (TGGA)n Simple_repeat Simple_repeat 4 160 0 3 629 490 261 7 29 chr12 5777230 5777368 -115480162 + MIRb SINE MIR 86 220 -48 3 629 552 293 38 6 chr12 5777767 5777925 -115479605 + B4 SINE B4 75 237 -55 3 629 507 228 0 0 chr12 5778777 5778900 -115478630 + CT-rich Low_complexity Low_complexity 2 124 0 3 629 1151 112 0 6 chr12 5779196 5779376 -115478154 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 3 629 389 143 0 13 chr12 5779377 5779455 -115478075 - Lx6 LINE L1 -4 7456 7380 3 629 549 316 115 22 chr12 5780031 5780300 -115477230 + RMER15 LTR ERVL 282 575 0 3 629 257 322 105 0 chr12 5780319 5780355 -115477175 + MLT2D LTR ERVL 1 43 -513 3 629 1146 184 4 22 chr12 5780355 5780583 -115476947 - URR1B DNA MER1_type -1 224 1 3 629 279 269 111 15 chr12 5780583 5780717 -115476813 + MLT2D LTR ERVL 44 189 -225 3 629 226 271 212 0 chr12 5780718 5780803 -115476727 + MTEb LTR MaLR 6 108 -251 3 629 301 298 70 9 chr12 5780913 5781028 -115476502 + MTEb LTR MaLR 258 379 0 3 629 230 329 85 7 chr12 5781031 5781172 -115476358 + MLT2D LTR ERVL 186 337 -127 3 629 190 303 65 33 chr12 5782056 5782148 -115475382 - MIR SINE MIR -150 112 18 3 629 219 139 47 0 chr12 5782488 5782531 -115474999 + T-rich Low_complexity Low_complexity 1 45 0 3 629 771 168 73 0 chr12 5782531 5782668 -115474862 - B1_Mus1 SINE Alu 0 148 2 3 629 182 170 80 60 chr12 5783419 5783469 -115474061 - MIRm SINE MIR -110 166 116 3 629 1186 62 0 0 chr12 5784881 5785027 -115472503 - B1_Mus1 SINE Alu -1 147 2 3 629 186 284 0 56 chr12 5785325 5785396 -115472134 - MIR3 SINE MIR -127 81 15 3 629 205 75 0 70 chr12 5786568 5786611 -115470919 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 3 629 1142 82 7 0 chr12 5786613 5786760 -115470770 - B1_Mus1 SINE Alu 0 148 1 3 629 456 51 0 0 chr12 5786782 5786841 -115470689 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 629 540 42 0 0 chr12 5786842 5786913 -115470617 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 629 480 311 134 14 chr12 5786939 5787223 -115470307 - Lx9 LINE L1 -183 7461 7144 3 629 696 107 0 0 chr12 5787229 5787332 -115470198 + (TG)n Simple_repeat Simple_repeat 2 104 0 3 629 1812 290 72 2 chr12 5787334 5787900 -115469630 + Lx9 LINE L1 6347 6952 -692 3 629 428 267 127 47 chr12 5789315 5789653 -115467877 - MLT1A0 LTR MaLR 0 365 1 3 629 462 332 118 19 chr12 5789740 5790163 -115467367 - Charlie4a DNA MER1_type -6 502 38 3 629 451 249 101 62 chr12 5791397 5791705 -115465825 + RLTR15 LTR ERVK 4 323 -36 3 629 438 298 103 24 chr12 5792825 5793038 -115464492 + RMER15 LTR ERVL 346 575 0 3 629 484 233 7 14 chr12 5793123 5793271 -115464259 - MER33 DNA MER1_type -42 282 136 3 629 288 0 0 0 chr12 5793775 5793807 -115463723 + (T)n Simple_repeat Simple_repeat 1 32 0 3 629 280 357 97 18 chr12 5794384 5794612 -115462918 + MLT1J2 LTR MaLR 203 448 0 3 629 203 385 50 50 chr12 5794689 5794891 -115462639 - L4 LINE RTE -685 1344 1143 3 629 981 229 23 5 chr12 5795277 5795528 -115462002 + Lx7 LINE L1 5622 5909 -1787 3 629 342 0 0 0 chr12 5795529 5795567 -115461963 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 629 378 0 0 0 chr12 5795567 5795608 -115461922 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 629 391 305 91 32 chr12 5795811 5796031 -115461499 - L1MB1 LINE L1 -13 6155 5923 3 629 602 272 98 19 chr12 5796483 5796749 -115460781 - L1MB1 LINE L1 -262 5927 5641 3 629 693 267 82 21 chr12 5796793 5797084 -115460446 + L1M3 LINE L1 4768 5076 -1064 3 629 1830 125 20 67 chr12 5797087 5797126 -115460404 - ORR1A2 LTR MaLR 0 327 295 3 629 2836 47 2 117 chr12 5797126 5797538 -115459992 - RLTR10B2 LTR ERVK 0 365 1 3 629 1830 125 20 67 chr12 5797538 5797674 -115459856 - ORR1A2 LTR MaLR -33 294 161 3 629 242 0 61 0 chr12 5797674 5797707 -115459823 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 629 1112 97 0 0 chr12 5797707 5797851 -115459679 - B1_Mus1 SINE Alu -3 145 2 3 629 1830 125 20 67 chr12 5797851 5798016 -115459514 - ORR1A2 LTR MaLR -167 160 2 3 629 291 113 0 0 chr12 5798053 5798106 -115459424 + (A)n Simple_repeat Simple_repeat 1 53 0 3 629 414 39 0 0 chr12 5798162 5798214 -115459316 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 629 263 236 42 0 chr12 5798214 5798286 -115459244 + L1M3 LINE L1 5183 5257 -883 3 629 733 285 68 20 chr12 5798324 5798575 -115458955 - Lx8 LINE L1 -267 7206 6944 4 629 639 300 64 30 chr12 5798570 5798835 -115458695 + Lx8 LINE L1 7200 7473 0 4 629 529 280 87 71 chr12 5798855 5799178 -115458352 + L1M3 LINE L1 5319 5646 -522 3 629 433 146 12 0 chr12 5799261 5799343 -115458187 - Lx2 LINE L1 -4 6993 6911 4 629 1287 84 0 0 chr12 5799367 5799545 -115457985 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 629 474 101 0 0 chr12 5799545 5799614 -115457916 + (TCC)n Simple_repeat Simple_repeat 3 71 0 4 629 255 133 0 0 chr12 5799833 5799878 -115457652 + (A)n Simple_repeat Simple_repeat 1 45 0 4 629 363 290 38 0 chr12 5800759 5800890 -115456640 - MER5A1 DNA MER1_type 0 166 31 4 629 192 77 0 0 chr12 5801555 5801581 -115455949 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 4 629 466 320 0 67 chr12 5802393 5802527 -115455003 - RSINE1 SINE B4 0 165 41 4 629 186 43 0 0 chr12 5803174 5803197 -115454333 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 4 629 11865 143 72 42 chr12 5803239 5808757 -115448773 - L1Md_F2 LINE L1 0 6582 725 4 629 442 260 8 8 chr12 5808765 5808893 -115448637 - L1Md_F2 LINE L1 -5814 802 675 4 629 385 267 90 45 chr12 5808952 5809152 -115448378 - L1VL1 LINE L1 -6030 392 66 4 629 267 321 133 49 chr12 5810024 5810266 -115447264 + MLT1F2 LTR MaLR 343 645 -9 4 629 243 0 0 0 chr12 5812394 5812421 -115445109 + (T)n Simple_repeat Simple_repeat 1 27 0 4 629 393 333 9 0 chr12 5812901 5813006 -115444524 - ID_B1 SINE B4 -28 196 91 4 629 357 174 11 32 chr12 5813015 5813110 -115444420 + CT-rich Low_complexity Low_complexity 1 93 0 4 629 332 277 21 11 chr12 5813112 5813207 -115444323 - BC1_Mm scRNA scRNA -53 99 4 4 629 1210 235 29 72 chr12 5813484 5813870 -115443660 - MLT1B LTR MaLR -3 387 19 4 629 303 276 133 0 chr12 5814329 5814434 -115443096 + B3 SINE B2 18 136 -80 4 629 25 51 0 33 chr12 5816022 5816047 -115441483 + AT_rich Low_complexity Low_complexity 1 24 0 4 629 507 294 68 24 chr12 5816047 5816253 -115441277 - B3 SINE B2 0 216 2 4 629 25 51 0 33 chr12 5816253 5816288 -115441242 + AT_rich Low_complexity Low_complexity 1 35 0 4 629 279 104 0 0 chr12 5816295 5816343 -115441187 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 629 472 287 44 6 chr12 5816373 5816531 -115440999 - B3A SINE B2 -29 169 6 4 629 424 292 61 8 chr12 5816826 5816957 -115440573 + RMER15 LTR ERVL 423 560 -15 4 629 199 343 128 7 chr12 5817017 5817158 -115440372 - MIR SINE MIR -3 259 102 4 629 468 317 101 8 chr12 5818305 5818553 -115438977 + L1MC4 LINE L1 7367 7637 -405 4 629 421 262 103 36 chr12 5818684 5818878 -115438652 + L1MC4 LINE L1 7690 7896 -146 4 629 295 361 18 60 chr12 5820632 5820850 -115436680 + LTR84b LTR ERVL 551 759 -2 4 629 245 29 29 0 chr12 5821199 5821233 -115436297 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 629 644 265 0 0 chr12 5821236 5821372 -115436158 - B1_Mur2 SINE Alu -12 137 2 4 629 376 300 10 0 chr12 5821589 5821689 -115435841 - RCHARR1 DNA MER1_type -871 103 3 4 629 724 209 55 33 chr12 5821732 5821915 -115435615 + MTD LTR MaLR 1 187 -232 4 629 789 273 20 89 chr12 5821916 5822293 -115435237 + MTC-int LTR MaLR 234 639 -619 4 629 274 157 0 38 chr12 5822657 5822710 -115434820 + B1_Mus1 SINE Alu 10 60 -88 4 629 396 214 0 0 chr12 5822710 5822827 -115434703 + GA-rich Low_complexity Low_complexity 1 117 0 4 629 451 204 0 53 chr12 5822830 5822944 -115434586 + B1_Mur4 SINE Alu 43 150 0 4 629 3939 97 17 29 chr12 5823201 5823787 -115433743 + Lx LINE L1 6076 6654 0 4 629 827 279 100 30 chr12 5824953 5825282 -115432248 - Lx8 LINE L1 0 7473 7122 4 629 2132 165 34 13 chr12 5825641 5826027 -115431503 - ORR1B1 LTR MaLR 0 394 1 4 629 213 289 45 40 chr12 5827485 5827662 -115429868 - L2c LINE L2 -179 3208 3030 4 629 657 263 31 10 chr12 5827743 5827939 -115429591 - MIR SINE MIR -9 253 54 4 629 9687 147 38 6 chr12 5828242 5828711 -115428819 - L1VL4 LINE L1 -663 5214 4734 4 629 414 0 0 0 chr12 5828711 5828757 -115428773 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 629 9687 147 38 6 chr12 5828757 5829987 -115427543 - L1VL4 LINE L1 -1144 4733 3463 4 629 21600 84 10 6 chr12 5829989 5832465 -115425065 - L1_Mus1 LINE L1 0 6567 4099 4 629 286 22 21 42 chr12 5832465 5832513 -115425017 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 629 1039 101 0 0 chr12 5832513 5832651 -115424879 - B1_Mus2 SINE Alu -9 138 1 4 629 21600 111 7 5 chr12 5832651 5835330 -115422200 - L1_Mus1 LINE L1 -1785 4098 1409 4 629 38543 15 2 6 chr12 5835327 5841523 -115416007 - L1Md_A LINE L1 0 6582 416 4 629 3661 141 41 9 chr12 5841523 5842485 -115415045 - L1_Mus1 LINE L1 -4461 1422 385 4 629 6417 158 9 8 chr12 5842484 5843751 -115413779 - MusHAL1 LINE L1 -434 2278 1010 4 629 4282 169 53 76 chr12 5843757 5844674 -115412856 - RMER19B LTR ERVK -6 896 1 4 629 4095 173 33 43 chr12 5844674 5844998 -115412532 - L1VL4 LINE L1 -3665 2212 1922 4 629 1914 125 33 0 chr12 5844998 5845301 -115412229 - Lx3_Mus LINE L1 -8 7001 6689 4 629 4095 190 31 49 chr12 5845301 5846383 -115411147 - L1VL4 LINE L1 -3956 1921 833 4 629 834 134 0 30 chr12 5846641 5846772 -115410758 - RMER6B LTR ERVK -314 147 21 4 629 339 354 0 9 chr12 5846764 5846878 -115410652 + B4A SINE B4 180 292 0 4 629 489 331 21 106 chr12 5847076 5847278 -115410252 - MLT1H-int LTR MaLR -919 490 307 4 629 252 0 0 0 chr12 5847278 5847306 -115410224 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 629 489 331 21 106 chr12 5847306 5847434 -115410096 - MLT1H-int LTR MaLR -1103 306 188 4 629 763 304 138 8 chr12 5847478 5847746 -115409784 + ORR1E LTR MaLR 36 338 -21 4 629 1476 253 81 16 chr12 5848416 5848801 -115408729 - MTD LTR MaLR -9 410 1 4 629 516 320 101 25 chr12 5848860 5849059 -115408471 - B3A SINE B2 -1 215 2 4 629 341 277 73 0 chr12 5850335 5850512 -115407018 + L1ME1 LINE L1 5259 5448 -731 4 629 439 236 34 0 chr12 5850517 5850606 -115406924 + 5S rRNA rRNA 1 92 -29 4 629 294 287 45 36 chr12 5850606 5850629 -115406901 + AmnSINE1 SINE SINE 1 113 -462 4 629 233 256 61 0 chr12 5850655 5850737 -115406793 + L1MD LINE L1 5509 5595 -2400 4 629 266 312 133 38 chr12 5850723 5851016 -115406514 + L1ME1 LINE L1 5625 5945 -234 4 629 450 94 0 0 chr12 5851019 5851083 -115406447 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 629 432 139 0 0 chr12 5851099 5851178 -115406352 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 629 1061 319 39 34 chr12 5852315 5852783 -115404747 - RMER5 LTR ERV1 -32 502 33 4 629 552 5 131 0 chr12 5853265 5853471 -115404059 + (TA)n Simple_repeat Simple_repeat 1 233 0 4 629 3642 79 0 4 chr12 5854127 5854611 -115402919 - L1Md_F2 LINE L1 -12 6570 6089 4 629 1652 254 35 25 chr12 5854868 5855271 -115402259 + MTD LTR MaLR 1 407 -12 4 629 1583 186 140 0 chr12 5856096 5856424 -115401106 + ORR1D1 LTR MaLR 1 374 0 4 629 251 324 92 9 chr12 5856553 5856662 -115400868 + MIR3 SINE MIR 60 177 -31 4 629 471 100 0 0 chr12 5857332 5857402 -115400128 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 629 2540 189 43 28 chr12 5857426 5857878 -115399652 + RLTR20B2 LTR ERVK 1 464 -96 4 629 369 0 0 0 chr12 5857878 5857919 -115399611 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 629 2540 189 43 28 chr12 5857919 5858000 -115399530 + RLTR20B2 LTR ERVK 465 542 -18 4 629 378 0 0 0 chr12 5858342 5858384 -115399146 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 629 364 306 45 0 chr12 5858806 5858917 -115398613 + MER94 DNA AcHobo 2 117 -17 4 629 219 88 0 0 chr12 5859049 5859083 -115398447 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 4 629 347 343 115 38 chr12 5859095 5859160 -115398370 + Tigger15a DNA TcMar 30 95 -620 4 629 693 234 7 0 chr12 5859160 5859305 -115398225 - B1_Mur1 SINE Alu -2 147 2 4 629 347 343 115 38 chr12 5859305 5859527 -115398003 + Tigger15a DNA TcMar 96 338 -377 4 629 288 325 26 9 chr12 5859625 5859740 -115397790 + Tigger15a DNA TcMar 489 605 -110 4 629 2243 163 55 0 chr12 5861528 5861927 -115395603 + MTC LTR MaLR 1 421 0 4 629 205 308 0 0 chr12 5862180 5862232 -115395298 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 629 224 182 26 0 chr12 5862232 5862309 -115395221 + (CAGA)n Simple_repeat Simple_repeat 4 82 0 4 629 396 0 0 0 chr12 5862330 5862374 -115395156 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 629 22 35 0 0 chr12 5862915 5862944 -115394586 + AT_rich Low_complexity Low_complexity 1 29 0 4 629 527 299 42 14 chr12 5863676 5863893 -115393637 + L1MA4 LINE L1 5714 5936 -364 4 629 506 304 143 58 chr12 5864396 5864738 -115392792 + MLT1A LTR MaLR 6 376 -14 4 629 558 365 41 16 chr12 5865828 5866070 -115391460 + MLT1J2 LTR MaLR 201 448 0 4 629 192 40 0 0 chr12 5866371 5866396 -115391134 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 629 223 347 136 25 chr12 5867356 5867554 -115389976 - MIR SINE MIR -28 234 15 4 629 2030 50 35 0 chr12 5867715 5867976 -115389554 - L1Md_F3 LINE L1 -14 6570 6301 4 629 371 80 0 0 chr12 5867976 5868026 -115389504 - L1Md_T LINE L1 -161 6421 6372 4 629 1233 80 11 49 chr12 5868064 5868081 -115389449 - B2_Mm1t SINE B2 -7 186 178 4 629 1500 56 0 10 chr12 5868081 5868281 -115389249 + L1Md_F2 LINE L1 6373 6570 -12 4 629 1233 80 11 49 chr12 5868281 5868448 -115389082 - B2_Mm1t SINE B2 -16 177 9 4 629 229 382 32 8 chr12 5868544 5868668 -115388862 + MIRb SINE MIR 97 223 -45 4 629 956 304 10 63 chr12 5869175 5869477 -115388053 + B4 SINE B4 6 291 -1 4 629 802 152 14 6 chr12 5871825 5872170 -115385360 + CT-rich Low_complexity Low_complexity 1 348 0 4 629 691 96 0 0 chr12 5872176 5872270 -115385260 - B1_Mus2 SINE Alu 0 147 54 4 629 234 0 0 0 chr12 5872537 5872563 -115384967 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 4 629 321 358 0 7 chr12 5872566 5872704 -115384826 + GA-rich Low_complexity Low_complexity 4 140 0 4 629 303 234 0 15 chr12 5873752 5873817 -115383713 + L3 LINE CR1 4419 4482 -7 4 629 271 329 30 65 chr12 5874392 5874630 -115382900 - MIRb SINE MIR -35 227 3 4 629 216 0 0 0 chr12 5875815 5875839 -115381691 + (T)n Simple_repeat Simple_repeat 1 24 0 4 629 285 321 81 80 chr12 5875847 5876220 -115381310 - MLT1I LTR MaLR 0 448 73 5 629 342 248 140 52 chr12 5877286 5877422 -115380108 + B4 SINE B4 1 148 -144 5 629 233 308 11 0 chr12 5877484 5877575 -115379955 - L1M5 LINE L1 -3822 2324 2233 5 629 368 196 20 3 chr12 5877610 5877725 -115379805 + L1VL1 LINE L1 4 83 -6339 5 629 1701 161 95 24 chr12 5877859 5878279 -115379251 + L1_Mus2 LINE L1 522 971 -5645 5 629 7343 87 8 17 chr12 5878273 5879991 -115377539 + L1_Mus2 LINE L1 4925 6565 -1 5 629 782 166 61 43 chr12 5880006 5880170 -115377360 - B2_Mm2 SINE B2 -22 173 7 5 629 3664 25 2 0 chr12 5880210 5880642 -115376888 - L1Md_F2 LINE L1 0 6582 6150 5 629 351 329 163 43 chr12 5880879 5881136 -115376394 - B4 SINE B4 -1 291 4 5 629 283 353 67 67 chr12 5881184 5881363 -115376167 + MER5A DNA MER1_type 9 187 -2 5 629 1485 187 161 14 chr12 5881474 5881827 -115375703 + MTD LTR MaLR 1 405 -14 5 629 658 260 52 27 chr12 5882003 5882426 -115375104 - L1MEc LINE L1 -4595 1820 1298 5 629 343 295 0 0 chr12 5882856 5882934 -115374596 - ID4 SINE ID -5 78 1 5 629 1541 234 48 14 chr12 5883608 5883963 -115373567 + ORR1D1 LTR MaLR 8 374 0 5 629 665 317 127 71 chr12 5884817 5885232 -115372298 - MER74A LTR ERVL -28 530 3 5 629 862 179 127 5 chr12 5885619 5885816 -115371714 + URR1B DNA MER1_type 5 225 0 5 629 21 36 0 0 chr12 5886580 5886608 -115370922 + AT_rich Low_complexity Low_complexity 1 28 0 5 629 348 64 0 0 chr12 5886629 5886676 -115370854 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 5 629 28 29 0 0 chr12 5886804 5886839 -115370691 + AT_rich Low_complexity Low_complexity 1 35 0 5 629 6916 113 16 4 chr12 5887042 5888080 -115369450 - Lx2 LINE L1 0 6997 5947 5 629 526 82 0 0 chr12 5888080 5888153 -115369377 - MusHAL1 LINE L1 -1653 1059 987 5 629 1298 284 31 22 chr12 5888305 5888665 -115368865 - MTE2b LTR MaLR -4 375 13 5 629 559 358 70 18 chr12 5888911 5889184 -115368346 - RMER15 LTR ERVL -14 561 275 5 629 1862 183 17 86 chr12 5889282 5889688 -115367842 - ORR1C1 LTR MaLR 0 378 1 5 629 1248 285 51 15 chr12 5890478 5890888 -115366642 - Tigger13a DNA MER2_type -323 448 24 5 629 1215 257 95 6 chr12 5891154 5891471 -115366059 + MTE2b LTR MaLR 35 379 0 5 629 762 278 136 91 chr12 5891497 5891937 -115365593 + MLT1D LTR MaLR 41 500 -5 5 629 5800 106 46 12 chr12 5892530 5893474 -115364056 - L1_Mus3 LINE L1 -12 6626 5651 5 629 319 299 160 5 chr12 5894377 5894565 -115362965 - MIR SINE MIR -6 256 40 5 629 30 27 0 0 chr12 5895145 5895182 -115362348 + AT_rich Low_complexity Low_complexity 1 37 0 5 629 262 237 129 40 chr12 5895200 5895301 -115362229 - Lx8 LINE L1 -390 7083 6974 5 629 874 304 42 9 chr12 5895295 5895630 -115361900 + Lx9 LINE L1 6705 7050 -594 5 629 292 284 81 47 chr12 5895671 5895929 -115361601 - L1_Rod LINE L1 -631 5216 4950 5 629 226 250 0 45 chr12 5895939 5896006 -115361524 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 5 629 285 333 77 35 chr12 5896059 5896202 -115361328 - B4A SINE B4 -120 172 24 5 629 1171 282 158 28 chr12 5896233 5897186 -115360344 - L1M2 LINE L1 -1148 4995 3924 5 629 342 0 0 0 chr12 5897186 5897224 -115360306 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 629 1171 282 158 28 chr12 5897224 5897336 -115360194 - L1M2 LINE L1 -2220 3923 3791 5 629 322 299 26 53 chr12 5897375 5897488 -115360042 - B4A SINE B4 0 292 183 5 629 2050 122 38 0 chr12 5897490 5897835 -115359695 - Lx2B LINE L1 -774 6226 5869 5 629 444 186 66 38 chr12 5897837 5897943 -115359587 - Lx8 LINE L1 -457 7016 6908 5 629 513 269 25 29 chr12 5897944 5898189 -115359341 - L1M2 LINE L1 -2407 3736 3493 5 78 424 336 22 7 chr12 5898211 5898349 -115359181 - ID_B1 SINE B4 0 224 85 5 630 572 279 91 39 chr12 5898407 5898716 -115358814 - L1M2 LINE L1 -2706 3437 3113 5 630 201 343 0 15 chr12 5898905 5898973 -115358557 + GA-rich Low_complexity Low_complexity 1 67 0 5 630 561 101 20 10 chr12 5898973 5899073 -115358457 + (GA)n Simple_repeat Simple_repeat 1 101 0 5 630 232 256 0 35 chr12 5899194 5899279 -115358251 - L1M2 LINE L1 -3067 3076 2995 5 630 468 0 0 0 chr12 5899623 5899675 -115357855 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 630 266 164 18 0 chr12 5901254 5901309 -115356221 + (CATAT)n Simple_repeat Simple_repeat 3 58 0 5 630 1194 95 0 0 chr12 5901443 5901601 -115355929 + B2_Mm2 SINE B2 1 158 -37 5 630 216 0 0 0 chr12 5901602 5901626 -115355904 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 5 630 365 59 0 0 chr12 5901682 5901733 -115355797 + B2_Mm1a SINE B2 127 177 -16 5 630 468 0 0 0 chr12 5901733 5901785 -115355745 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 630 462 79 0 0 chr12 5901942 5902005 -115355525 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 630 1053 256 28 0 chr12 5902442 5902692 -115354838 - Lx5 LINE L1 -124 6926 6670 5 630 333 129 0 0 chr12 5903326 5903396 -115354134 + (T)n Simple_repeat Simple_repeat 1 70 0 5 630 234 356 123 43 chr12 5903505 5903716 -115353814 + MLT1G1 LTR MaLR 184 411 -168 5 630 297 0 0 0 chr12 5903781 5903814 -115353716 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 630 672 24 0 0 chr12 5903877 5903959 -115353571 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 630 507 17 0 0 chr12 5904021 5904081 -115353449 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 630 979 108 7 0 chr12 5904450 5904589 -115352941 - B1_Mus1 SINE Alu 0 148 9 5 630 31335 96 16 2 chr12 5904882 5911016 -115346514 - L1Md_F2 LINE L1 0 6582 362 5 630 279 269 22 1 chr12 5911076 5911171 -115346359 - L2a LINE L2 -62 3364 3247 5 630 2457 217 144 15 chr12 5911353 5912158 -115345372 + Lx9 LINE L1 6735 7643 -1 5 630 298 376 39 28 chr12 5912176 5912354 -115345176 - Charlie10 DNA MER1_type -2611 211 32 5 630 198 0 0 0 chr12 5914857 5914879 -115342651 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 630 828 157 0 0 chr12 5914924 5915071 -115342459 + (TA)n Simple_repeat Simple_repeat 1 147 0 5 630 746 271 33 126 chr12 5915504 5915700 -115341830 + MTD LTR MaLR 11 205 -214 5 630 6195 67 4 0 chr12 5915700 5916490 -115341040 + L1_Mus2 LINE L1 5773 6565 -1 5 630 746 271 33 126 chr12 5916490 5916563 -115340967 + MTD LTR MaLR 206 255 -164 5 630 920 103 7 27 chr12 5916563 5916712 -115340818 - URR1A DNA MER1_type -2 224 79 5 630 678 238 27 11 chr12 5916738 5916921 -115340609 + MTD LTR MaLR 234 419 0 5 630 1113 41 7 7 chr12 5917417 5917554 -115339976 - L1_Mm LINE L1 -838 5045 4909 5 630 2026 21 8 0 chr12 5917554 5917793 -115339737 + L1Md_F3 LINE L1 6344 6584 0 5 630 1113 41 7 7 chr12 5917793 5917804 -115339726 - L1_Mm LINE L1 -975 4908 4897 5 630 27 49 0 0 chr12 5917843 5917884 -115339646 + AT_rich Low_complexity Low_complexity 1 41 0 5 630 4125 90 2 0 chr12 5917898 5918453 -115339077 - L1_Mus1 LINE L1 0 6567 6012 5 630 866 73 0 16 chr12 5918453 5918579 -115338951 + L1_Mus1 LINE L1 5886 6009 -557 5 630 199 278 110 14 chr12 5919769 5919842 -115337688 - MIRb SINE MIR -56 212 133 5 630 260 290 33 105 chr12 5919848 5920029 -115337501 + L2 LINE L2 2773 2940 -479 5 630 182 385 41 49 chr12 5920905 5921028 -115336502 + L2 LINE L2 2358 2479 -940 5 630 463 356 50 31 chr12 5921235 5921493 -115336037 - MIRb SINE MIR -3 265 3 5 630 449 306 116 58 chr12 5921624 5921724 -115335806 - MLT1I LTR MaLR -7 404 305 5 630 803 61 23 8 chr12 5921724 5921856 -115335674 + (CA)n Simple_repeat Simple_repeat 2 135 0 5 630 449 306 116 58 chr12 5921856 5922047 -115335483 - MLT1I LTR MaLR -107 304 96 5 630 24 53 0 0 chr12 5922506 5922544 -115334986 + AT_rich Low_complexity Low_complexity 1 38 0 5 630 1687 225 58 0 chr12 5922592 5923009 -115334521 + Lx9 LINE L1 6950 7390 -254 5 630 255 375 27 0 chr12 5923911 5924023 -115333507 + LTR85b LTR Gypsy? 670 784 0 5 630 268 346 8 0 chr12 5924028 5924158 -115333372 - L1M5 LINE L1 -410 5714 5584 5 630 263 202 12 0 chr12 5924552 5924636 -115332894 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 630 279 0 0 0 chr12 5924718 5924749 -115332781 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 630 1028 274 137 18 chr12 5925899 5926234 -115331296 - MTE2a LTR MaLR -2 377 3 5 630 306 319 138 5 chr12 5926457 5926652 -115330878 - L1M5 LINE L1 -768 5378 5158 5 630 327 104 0 0 chr12 5926720 5926768 -115330762 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 630 314 268 243 17 chr12 5926909 5927144 -115330386 - RMER15 LTR ERVL -13 562 275 5 630 27 29 0 0 chr12 5927396 5927430 -115330100 + AT_rich Low_complexity Low_complexity 1 34 0 5 630 351 0 0 0 chr12 5929435 5929474 -115328056 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 630 180 0 0 0 chr12 5930098 5930118 -115327412 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 630 772 261 159 19 chr12 5931407 5931714 -115325816 - MLT2B4 LTR ERVL -206 350 1 5 630 270 0 0 0 chr12 5931918 5931948 -115325582 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 630 1176 58 0 0 chr12 5933324 5933463 -115324067 + B1_Mus1 SINE Alu 2 140 -8 5 630 266 0 0 29 chr12 5933463 5933498 -115324032 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 630 324 258 0 0 chr12 5933600 5933697 -115323833 + (TA)n Simple_repeat Simple_repeat 2 98 0 5 630 295 225 70 0 chr12 5933745 5933816 -115323714 + MLT1F2 LTR MaLR 485 560 0 5 630 699 302 50 25 chr12 5934741 5934982 -115322548 - B4A SINE B4 -44 248 2 5 630 204 125 0 0 chr12 5935037 5935069 -115322461 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 630 305 309 6 120 chr12 5935171 5935191 -115322339 - B1F2 SINE Alu 0 149 135 5 630 1135 68 0 13 chr12 5935191 5935341 -115322189 - B1_Mus1 SINE Alu 0 148 1 5 630 305 309 6 120 chr12 5935341 5935478 -115322052 - B1F2 SINE Alu -15 134 10 5 630 651 301 63 40 chr12 5935342 5935564 -115321966 - B4 SINE B4 -63 229 3 5 630 241 237 101 42 chr12 5935566 5935685 -115321845 - MER33 DNA MER1_type -123 201 76 5 630 228 277 129 69 chr12 5937785 5937886 -115319644 + MLT1A1 LTR MaLR 1 107 -301 5 630 324 306 46 9 chr12 5937963 5938072 -115319458 + MLT1A1 LTR MaLR 269 381 -27 5 630 3597 61 2 36 chr12 5938425 5938919 -115318611 + L1_Mus2 LINE L1 6090 6566 0 5 630 21 36 0 0 chr12 5939238 5939266 -115318264 + AT_rich Low_complexity Low_complexity 1 28 0 5 630 201 39 0 0 chr12 5941138 5941164 -115316366 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 630 324 314 0 19 chr12 5941197 5941301 -115316229 - B4A SINE B4 -20 272 171 6 630 522 143 0 0 chr12 5942291 5942410 -115315120 + (TC)n Simple_repeat Simple_repeat 2 120 0 6 630 310 285 170 49 chr12 5942542 5942789 -115314741 + L2b LINE L2 3108 3387 0 6 630 243 61 0 0 chr12 5943009 5943042 -115314488 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 6 630 228 254 51 0 chr12 5943359 5943418 -115314112 + MER92B LTR ERV1 102 163 -473 6 630 1157 265 34 70 chr12 5943478 5943900 -115313630 + MTE2a LTR MaLR 2 398 -21 6 630 474 351 108 11 chr12 5943909 5944188 -115313342 - MLT1A0 LTR MaLR -12 353 48 6 630 426 39 0 0 chr12 5946127 5946179 -115311351 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 630 945 253 46 32 chr12 5946197 5946479 -115311051 - B4 SINE B4 -4 288 3 6 630 204 125 0 0 chr12 5947363 5947395 -115310135 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 6 630 504 0 0 0 chr12 5947788 5947844 -115309686 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 6 630 539 286 130 9 chr12 5948075 5948290 -115309240 + MIR SINE MIR 8 248 -14 6 630 273 303 67 71 chr12 5949584 5949808 -115307722 + RMER15 LTR ERVL 342 564 -11 6 630 862 263 9 32 chr12 5951627 5951847 -115305683 - B3 SINE B2 0 216 2 6 630 23 78 0 0 chr12 5951997 5952048 -115305482 + AT_rich Low_complexity Low_complexity 1 51 0 6 630 393 299 45 85 chr12 5952060 5952283 -115305247 + MER33 DNA MER1_type 1 214 -110 6 630 373 336 144 33 chr12 5952609 5952914 -115304616 - L3 LINE CR1 -111 4378 4040 6 630 1247 269 69 13 chr12 5953054 5953431 -115304099 + MTD LTR MaLR 1 398 -21 6 630 495 0 0 0 chr12 5953776 5953831 -115303699 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 630 235 370 35 48 chr12 5954044 5954189 -115303341 - L3 LINE CR1 -1245 3244 3102 6 630 570 262 31 8 chr12 5954621 5954748 -115302782 + B1F SINE Alu 2 131 -18 6 630 28 0 0 0 chr12 5954756 5954784 -115302746 + AT_rich Low_complexity Low_complexity 1 28 0 6 630 21 36 0 0 chr12 5955225 5955253 -115302277 + AT_rich Low_complexity Low_complexity 1 28 0 6 630 246 262 75 0 chr12 5957641 5957721 -115299809 - MIRm SINE MIR -122 154 69 6 630 1537 120 62 0 chr12 5957873 5958132 -115299398 - Lx2A1 LINE L1 0 7008 6734 6 630 1048 304 33 0 chr12 5958256 5958529 -115299001 + B4A SINE B4 9 290 -2 6 630 1660 109 58 0 chr12 5958781 5959038 -115298492 - L1_Mus3 LINE L1 0 6638 6367 6 630 1923 99 53 7 chr12 5959638 5959923 -115297607 + L1_Mus2 LINE L1 6269 6566 0 6 630 517 350 51 57 chr12 5960077 5960413 -115297117 + ORR1E LTR MaLR 21 354 -5 6 630 219 281 35 0 chr12 5961357 5961414 -115296116 - L2c LINE L2 -247 3140 3082 6 630 567 219 0 0 chr12 5961792 5961929 -115295601 + (TA)n Simple_repeat Simple_repeat 2 138 0 6 630 207 0 0 0 chr12 5963295 5963318 -115294212 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 630 635 335 64 31 chr12 5963365 5963784 -115293746 + L2 LINE L2 1752 2184 -1235 6 630 306 0 0 0 chr12 5963858 5963892 -115293638 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 630 333 329 101 56 chr12 5963916 5964183 -115293347 - B4 SINE B4 -11 281 3 6 630 207 0 0 0 chr12 5964187 5964210 -115293320 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 630 338 295 17 118 chr12 5964219 5964338 -115293192 - PB1D7 SINE Alu -2 118 12 6 630 207 309 182 7 chr12 5964522 5964659 -115292871 + L2 LINE L2 2562 2722 -697 6 630 248 255 19 38 chr12 5965598 5965704 -115291826 + G-rich Low_complexity Low_complexity 2 105 0 6 630 3430 165 37 30 chr12 5966286 5966929 -115290601 + Lx4B LINE L1 6403 7050 -8 6 630 189 0 0 0 chr12 5967112 5967133 -115290397 + (T)n Simple_repeat Simple_repeat 1 21 0 6 630 333 284 33 20 chr12 5967290 5967441 -115290089 + CT-rich Low_complexity Low_complexity 5 157 0 6 630 508 276 91 45 chr12 5967807 5968137 -115289393 - L1ME1 LINE L1 0 6179 5835 6 630 269 267 108 0 chr12 5969320 5969440 -115288090 + L1ME1 LINE L1 5287 5419 -755 6 630 5270 95 49 13 chr12 5969499 5970279 -115287251 - RLTR13C2 LTR ERVK 0 808 1 6 630 789 184 7 0 chr12 5970279 5970415 -115287115 + B1_Mur4 SINE Alu 13 149 -1 6 630 346 335 51 14 chr12 5970710 5970986 -115286544 + L1ME1 LINE L1 5861 6146 -33 6 630 6679 47 1 2 chr12 5971128 5971987 -115285543 - L1Md_F2 LINE L1 -12 6570 5713 6 630 270 237 0 0 chr12 5972275 5972351 -115285179 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 630 1196 0 43 0 chr12 5973088 5973252 -115284278 + (TCTA)n Simple_repeat Simple_repeat 2 172 0 6 630 436 249 6 6 chr12 5975465 5975631 -115281899 + (TG)n Simple_repeat Simple_repeat 1 166 0 6 630 217 309 0 0 chr12 5975632 5975687 -115281843 + (TATG)n Simple_repeat Simple_repeat 1 55 0 6 630 216 261 0 0 chr12 5975692 5975757 -115281773 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 630 315 228 18 0 chr12 5977302 5977359 -115280171 - PB1D10 SINE Alu -8 109 52 6 630 1292 175 9 0 chr12 5979124 5979347 -115278183 - URR1B DNA MER1_type 0 225 1 6 630 549 309 96 17 chr12 5979461 5979639 -115277891 - B3 SINE B2 -24 192 1 6 630 230 151 200 36 chr12 5979639 5979694 -115277836 + MER5A1 DNA MER1_type 102 165 -1 6 630 327 169 0 0 chr12 5980312 5980383 -115277147 + CT-rich Low_complexity Low_complexity 2 72 0 6 630 280 378 25 19 chr12 5980660 5980819 -115276711 - L3 LINE CR1 -813 3676 3517 6 630 922 141 170 10 chr12 5981216 5981410 -115276120 + URR1B DNA MER1_type 1 225 0 6 630 501 80 0 0 chr12 5982291 5982366 -115275164 + (TATG)n Simple_repeat Simple_repeat 2 76 0 6 630 551 189 107 9 chr12 5982391 5982503 -115275027 - B2_Mm2 SINE B2 -67 128 6 6 630 4215 179 39 57 chr12 5982652 5983528 -115274002 - RMER13A LTR ERVK 0 860 1 6 630 220 347 133 40 chr12 5983777 5984130 -115273400 - L2 LINE L2 -515 2904 2519 6 630 612 62 0 0 chr12 5984370 5984451 -115273079 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 6 630 231 140 0 0 chr12 5984458 5984508 -115273022 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 6 630 1200 108 16 0 chr12 5984758 5984943 -115272587 + B2_Mm1t SINE B2 5 192 -1 6 630 1144 81 0 0 chr12 5984955 5985103 -115272427 + B1_Mus1 SINE Alu 1 148 0 6 630 241 348 41 52 chr12 5985551 5985648 -115271882 - MER81 DNA AcHobo -14 100 5 6 630 4117 208 63 6 chr12 5986253 5987185 -115270345 + Lx5 LINE L1 6066 7050 0 6 630 432 0 0 0 chr12 5987641 5987689 -115269841 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 630 691 284 87 0 chr12 5987749 5988059 -115269471 + L1MA4 LINE L1 5556 5892 -408 6 630 21 36 0 0 chr12 5988208 5988236 -115269294 + AT_rich Low_complexity Low_complexity 1 28 0 6 630 242 271 35 23 chr12 5988475 5988562 -115268968 - MLT1A0 LTR MaLR -51 314 227 6 630 405 366 156 49 chr12 5989621 5990026 -115267504 - MLT1C LTR MaLR -13 454 7 6 630 23 0 0 0 chr12 5992043 5992066 -115265464 + AT_rich Low_complexity Low_complexity 1 23 0 6 630 226 211 170 43 chr12 5992692 5992786 -115264744 + Kanga1 DNA Tc2 455 560 -1185 6 630 34 42 0 0 chr12 5993289 5993337 -115264193 + AT_rich Low_complexity Low_complexity 1 48 0 6 630 399 338 102 19 chr12 5993854 5994011 -115263519 - B4 SINE B4 -76 216 47 6 630 330 26 0 0 chr12 5994900 5994939 -115262591 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 630 619 272 18 12 chr12 5994989 5995153 -115262377 - B4A SINE B4 -22 270 106 6 630 252 221 269 13 chr12 5995506 5995584 -115261946 - B4A SINE B4 -194 98 1 6 630 519 277 27 53 chr12 5996112 5996299 -115261231 + B3A SINE B2 1 182 -16 6 630 394 231 67 0 chr12 5996332 5996466 -115261064 - Lx9 LINE L1 -7 7637 7495 6 630 365 86 17 0 chr12 5996949 5997007 -115260523 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 630 440 215 2 8 chr12 5997011 5997107 -115260423 - B4A SINE B4 -71 94 2 6 630 438 184 71 27 chr12 5997537 5997649 -115259881 - ID_B1 SINE B4 -4 220 104 6 630 308 264 112 32 chr12 5997538 5997663 -115259867 - B1F SINE Alu -5 144 10 6 630 423 0 0 0 chr12 5999716 5999763 -115257767 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 630 345 351 100 24 chr12 6000529 6000818 -115256712 - L2a LINE L2 -18 3408 3098 1 630 204 363 110 0 chr12 6000949 6001095 -115256435 - L2a LINE L2 -1105 2314 2153 1 630 1785 235 142 51 chr12 6001259 6001949 -115255581 - Lx9 LINE L1 -7 7637 6885 2 630 22 0 0 0 chr12 6003173 6003195 -115254335 + AT_rich Low_complexity Low_complexity 1 22 0 3 630 369 95 0 0 chr12 6003264 6003327 -115254203 + (T)n Simple_repeat Simple_repeat 1 63 0 4 630 197 333 42 35 chr12 6003716 6003859 -115253671 - MIRc SINE MIR -79 189 46 5 630 649 319 110 26 chr12 6004796 6005483 -115252047 - L2a LINE L2 -1 3425 2634 6 630 356 316 62 25 chr12 6005699 6005861 -115251669 + MIR SINE MIR 93 260 -2 7 630 24 53 0 0 chr12 6009156 6009194 -115248336 + AT_rich Low_complexity Low_complexity 1 38 0 8 630 28 29 0 0 chr12 6009235 6009270 -115248260 + AT_rich Low_complexity Low_complexity 1 35 0 9 630 235 232 0 14 chr12 6009436 6009506 -115248024 + A-rich Low_complexity Low_complexity 5 73 0 1 630 324 0 0 0 chr12 6009833 6009869 -115247661 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 630 503 306 28 50 chr12 6010477 6010659 -115246871 + B3A SINE B2 11 188 -10 1 630 356 350 149 31 chr12 6010799 6011223 -115246307 - L1MC4a LINE L1 -2014 5868 5395 1 630 250 218 18 0 chr12 6012418 6012473 -115245057 + RLTR15 LTR ERVK 133 188 -171 1 630 1026 207 25 10 chr12 6013910 6014110 -115243420 + B3 SINE B2 4 206 -10 1 630 411 233 226 21 chr12 6014178 6014326 -115243204 + MTD LTR MaLR 197 365 -14 1 630 1015 307 106 32 chr12 6014359 6015438 -115242092 - L1ME1 LINE L1 -77 6275 5130 1 630 218 276 35 0 chr12 6015728 6015786 -115241744 + CT-rich Low_complexity Low_complexity 3 62 0 1 630 247 260 0 0 chr12 6016182 6016232 -115241298 + RSINE1 SINE B4 4 53 -112 1 630 180 0 0 0 chr12 6016526 6016546 -115240984 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 630 234 0 0 0 chr12 6016565 6016591 -115240939 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 630 570 265 17 40 chr12 6016995 6017168 -115240362 - B3 SINE B2 0 216 48 2 630 328 316 66 20 chr12 6017361 6017558 -115239972 - L1ME1 LINE L1 -5907 493 288 1 630 23 0 0 0 chr12 6018195 6018218 -115239312 + AT_rich Low_complexity Low_complexity 1 23 0 2 630 934 98 0 14 chr12 6018655 6018800 -115238730 - L1Md_F2 LINE L1 -12 6570 6428 2 630 3665 89 2 2 chr12 6018800 6019294 -115238236 + L1Md_F2 LINE L1 5936 6429 -153 2 630 38544 4 0 0 chr12 6019823 6025380 -115232150 + L1Md_A LINE L1 30 5586 -297 2 630 9020 3 0 0 chr12 6025380 6026376 -115231154 + L1Md_A LINE L1 5587 6582 0 2 630 2351 204 39 67 chr12 6026465 6026985 -115230545 - RLTR18B LTR ERVK -7 505 1 2 630 477 340 54 38 chr12 6027273 6027588 -115229942 - L1MEg LINE L1 -4343 1741 1422 2 630 372 299 19 0 chr12 6027697 6027804 -115229726 - PB1D10 SINE Alu -7 110 2 2 630 351 119 0 0 chr12 6028256 6028323 -115229207 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 630 572 314 29 0 chr12 6028550 6028690 -115228840 - RSINE1 SINE B4 -19 146 3 3 630 435 322 38 81 chr12 6029048 6029234 -115228296 + MER20 DNA MER1_type 2 179 -40 3 631 675 67 0 0 chr12 6029904 6029993 -115227537 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 631 364 284 44 27 chr12 6030331 6030474 -115227056 + MLT2B4 LTR ERVL 63 207 -349 3 631 453 103 0 0 chr12 6031236 6031304 -115226226 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 631 308 220 17 17 chr12 6031838 6031958 -115225572 + (CATA)n Simple_repeat Simple_repeat 2 121 0 3 631 384 363 97 46 chr12 6032628 6032927 -115224603 + L2a LINE L2 2801 3107 -319 3 631 1041 140 105 0 chr12 6032927 6033127 -115224403 - Lx2B LINE L1 0 7000 6780 3 631 384 351 110 55 chr12 6033127 6033408 -115224122 + L2a LINE L2 3108 3425 -1 3 631 198 0 0 0 chr12 6034045 6034067 -115223463 + (T)n Simple_repeat Simple_repeat 1 22 0 3 631 302 323 216 6 chr12 6034147 6034309 -115223221 + MIR SINE MIR 45 240 -22 3 631 290 348 49 21 chr12 6034643 6034787 -115222743 - MIR SINE MIR -5 257 110 4 631 504 343 129 26 chr12 6035088 6035429 -115222101 - MLT1E1A LTR MaLR -24 656 281 4 631 501 375 27 19 chr12 6035858 6036114 -115221416 + MLT1A0 LTR MaLR 5 262 -103 4 631 1464 227 31 54 chr12 6036252 6036651 -115220879 - MT2A LTR ERVL -72 529 1 4 631 733 289 63 6 chr12 6036999 6037173 -115220357 + B3 SINE B2 2 185 -31 4 631 822 244 21 44 chr12 6037173 6037434 -115220096 + ORR1D1 LTR MaLR 1 244 -134 4 631 852 210 48 39 chr12 6037407 6037615 -115219915 + ORR1D1 LTR MaLR 157 366 -8 4 631 27 62 0 0 chr12 6037636 6037684 -115219846 + AT_rich Low_complexity Low_complexity 1 48 0 4 631 363 106 0 0 chr12 6040097 6040163 -115217367 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 4 631 414 0 0 0 chr12 6040161 6040207 -115217323 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 631 833 76 8 0 chr12 6040207 6040325 -115217205 + (TTTCC)n Simple_repeat Simple_repeat 3 121 0 4 631 234 327 111 52 chr12 6045498 6045769 -115211761 + B4A SINE B4 2 288 -4 5 631 543 43 0 0 chr12 6045771 6045841 -115211689 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 631 234 0 0 0 chr12 6045841 6045866 -115211664 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 631 406 313 0 17 chr12 6046308 6046425 -115211105 + PB1D7 SINE Alu 5 119 -1 5 631 180 283 0 62 chr12 6047164 6047228 -115210302 + L3 LINE CR1 130 189 -4300 5 631 188 315 33 11 chr12 6049813 6049903 -115207627 + MIRb SINE MIR 58 149 -119 5 631 1599 298 33 57 chr12 6049956 6050070 -115207460 - Lx8 LINE L1 -2 7471 7371 5 631 420 20 0 0 chr12 6050070 6050119 -115207411 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 631 1599 298 33 57 chr12 6050119 6050673 -115206857 - Lx8 LINE L1 -103 7370 6819 5 631 279 54 0 0 chr12 6051897 6051934 -115205596 + (T)n Simple_repeat Simple_repeat 1 37 0 5 631 234 0 0 0 chr12 6052608 6052634 -115204896 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 631 24 32 0 0 chr12 6053272 6053303 -115204227 + AT_rich Low_complexity Low_complexity 1 31 0 6 631 1081 103 7 0 chr12 6056861 6057007 -115200523 - B1_Mus1 SINE Alu 0 148 2 6 631 1853 122 13 17 chr12 6057018 6057317 -115200213 - Lx LINE L1 -7 6647 6350 6 631 346 308 128 120 chr12 6057610 6057869 -115199661 - B4A SINE B4 -19 273 5 6 631 2472 167 74 20 chr12 6058235 6058736 -115198794 + RLTR11A LTR ERVK 1 528 0 6 631 328 318 63 16 chr12 6058904 6059037 -115198493 + PB1D10 SINE Alu 13 146 -3 6 631 365 200 77 39 chr12 6059166 6059270 -115198260 - MTEa LTR MaLR 0 379 272 6 631 261 267 17 14 chr12 6059294 6059378 -115198152 - MTEa LTR MaLR -293 86 1 6 631 216 0 0 0 chr12 6060468 6060492 -115197038 + (T)n Simple_repeat Simple_repeat 1 24 0 6 631 26 50 0 0 chr12 6061156 6061196 -115196334 + AT_rich Low_complexity Low_complexity 1 40 0 6 631 645 25 0 0 chr12 6061289 6061368 -115196162 + (CAAAC)n Simple_repeat Simple_repeat 2 80 0 6 631 225 0 0 0 chr12 6061700 6061725 -115195805 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 631 1106 307 51 11 chr12 6061799 6062152 -115195378 - MTE2b LTR MaLR -4 375 9 7 631 320 256 112 82 chr12 6063184 6063673 -115193857 - L1MC5 LINE L1 -50 7911 7408 7 631 250 285 39 96 chr12 6063941 6064201 -115193329 - L1MC5 LINE L1 -932 7029 6785 7 631 2959 305 88 30 chr12 6064715 6066211 -115191319 - Lx8 LINE L1 -1 7472 5853 7 631 2834 85 0 104 chr12 6066211 6066682 -115190848 - BGLII_Mus LTR ERVK 0 422 1 7 631 1095 326 126 50 chr12 6066682 6066802 -115190728 - Lx8 LINE L1 -1844 5852 5730 7 631 400 284 15 0 chr12 6066789 6066924 -115190606 - Lx4B LINE L1 -636 5808 5681 7 631 612 101 0 0 chr12 6067101 6067190 -115190340 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 7 631 786 50 0 0 chr12 6067192 6067291 -115190239 + (TTTCC)n Simple_repeat Simple_repeat 3 101 0 7 631 633 252 221 12 chr12 6067291 6067540 -115189990 - MTC LTR MaLR -53 368 68 7 631 2582 68 13 0 chr12 6067540 6068020 -115189510 - L1VL4 LINE L1 -2321 1238 753 7 631 30472 104 10 5 chr12 6068042 6074059 -115183471 - L1_Mus2 LINE L1 -1 6568 564 8 631 304 315 89 51 chr12 6074115 6074329 -115183201 - L1MEc LINE L1 -1517 4802 4581 8 631 192 77 0 0 chr12 6074379 6074405 -115183125 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 631 318 294 149 17 chr12 6074451 6074752 -115182778 - L1MEc LINE L1 -1792 4527 4187 8 631 251 146 55 0 chr12 6074813 6074868 -115182662 - Lx9 LINE L1 -54 7590 7533 8 631 325 324 73 17 chr12 6074873 6075052 -115182478 - L1MEc LINE L1 -2120 4199 4011 8 631 1601 154 48 53 chr12 6075073 6075410 -115182120 - Lx2B LINE L1 -4 6996 6662 8 631 328 327 118 13 chr12 6075410 6075562 -115181968 - L1MEc LINE L1 -2287 4032 3865 8 631 689 360 63 40 chr12 6075569 6075916 -115181614 - MLT1A1 LTR MaLR -40 368 14 8 631 451 250 63 36 chr12 6075920 6076173 -115181357 - L1MEc LINE L1 -4838 1562 1303 8 631 584 288 0 62 chr12 6076189 6076400 -115181130 - B3A SINE B2 0 198 1 8 631 249 83 0 0 chr12 6076457 6076493 -115181037 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 631 334 317 0 0 chr12 6076542 6076624 -115180906 - ID4_ SINE ID 0 83 2 8 631 382 289 148 0 chr12 6076696 6076838 -115180692 + RSINE1 SINE B4 3 165 0 8 631 687 56 0 36 chr12 6077469 6077580 -115179950 + L1Md_F2 LINE L1 6466 6572 -10 9 631 512 257 48 7 chr12 6077607 6077752 -115179778 + Lx9 LINE L1 7196 7346 -298 9 631 422 206 26 84 chr12 6077791 6077982 -115179548 + Lx9 LINE L1 7465 7644 0 9 631 1776 64 36 16 chr12 6078147 6078400 -115179130 - L1Md_F2 LINE L1 -2 6580 6323 9 631 376 247 31 10 chr12 6078475 6078573 -115178957 - Lx9 LINE L1 -410 7234 7135 9 631 23 0 0 0 chr12 6079078 6079101 -115178429 + AT_rich Low_complexity Low_complexity 1 23 0 9 631 538 335 85 64 chr12 6079361 6079689 -115177841 + MLT1A0 LTR MaLR 31 365 0 9 631 331 294 76 29 chr12 6080161 6080194 -115177336 + B4A SINE B4 183 215 -77 9 631 387 0 0 0 chr12 6080194 6080237 -115177293 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 9 631 331 294 76 29 chr12 6080237 6080308 -115177222 + B4A SINE B4 216 291 -1 9 631 626 0 14 0 chr12 6080315 6080389 -115177141 + (GA)n Simple_repeat Simple_repeat 2 76 0 9 631 2923 81 8 10 chr12 6080711 6081112 -115176418 + MTB LTR MaLR 1 400 0 9 631 1941 51 0 0 chr12 6081544 6081779 -115175751 - L1_Mus2 LINE L1 -124 6442 6208 1 631 571 61 0 12 chr12 6081779 6081862 -115175668 + L1_Mus2 LINE L1 6484 6565 -1 1 631 254 73 24 0 chr12 6081876 6081917 -115175613 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 631 401 338 70 60 chr12 6081929 6082220 -115175310 + Kanga11a DNA Tc2 307 605 -365 1 631 2438 189 61 19 chr12 6082305 6082562 -115174968 + Lx5 LINE L1 5843 6101 -949 1 631 297 0 0 0 chr12 6082562 6082595 -115174935 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 631 2438 189 61 19 chr12 6082595 6082861 -115174669 + Lx5 LINE L1 6102 6388 -662 1 631 243 0 0 0 chr12 6082907 6082934 -115174596 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1 631 216 255 0 19 chr12 6084210 6084262 -115173268 + GA-rich Low_complexity Low_complexity 5 55 0 1 631 38074 41 5 3 chr12 6084753 6090943 -115166587 - L1Md_T LINE L1 0 6585 285 1 631 319 342 70 9 chr12 6091010 6091125 -115166405 + RSINE1 SINE B4 30 151 -14 1 631 411 271 136 44 chr12 6091178 6091561 -115165969 + L1MD1 LINE L1 4981 5398 -748 1 631 437 269 9 0 chr12 6091558 6091666 -115165864 + Lx6 LINE L1 7044 7152 -308 1 631 387 182 0 0 chr12 6091666 6091743 -115165787 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 631 973 202 167 8 chr12 6091743 6092007 -115165523 + Lx6 LINE L1 7142 7447 -13 1 631 1140 331 54 31 chr12 6092009 6092714 -115164816 + L1MD1 LINE L1 5383 6103 -139 1 631 195 42 0 0 chr12 6094243 6094267 -115163263 + (T)n Simple_repeat Simple_repeat 1 24 0 1 631 329 0 0 24 chr12 6095425 6095467 -115162063 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 1 631 382 322 51 38 chr12 6095852 6096010 -115161520 - MER58A DNA MER1_type -34 190 31 1 631 1312 298 59 19 chr12 6096368 6096840 -115160690 + L3 LINE CR1 3339 3829 -660 1 631 491 31 15 0 chr12 6097871 6097936 -115159594 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 1 631 307 336 17 17 chr12 6098076 6098194 -115159336 + L2a LINE L2 3309 3426 0 1 631 530 269 186 20 chr12 6098318 6098814 -115158716 + L1MA4 LINE L1 5723 6300 0 1 631 182 138 0 0 chr12 6099520 6099549 -115157981 - L2a LINE L2 -20 3406 3378 1 631 287 284 208 25 chr12 6099576 6099588 -115157942 - CYRA11_Mm Unknown Y-chromosome -241 376 301 1 631 786 196 89 0 chr12 6099588 6099756 -115157774 + URR1A DNA MER1_type 44 226 0 1 631 287 284 208 25 chr12 6099756 6099778 -115157752 - CYRA11_Mm Unknown Y-chromosome -241 300 138 1 631 734 283 66 130 chr12 6100062 6100595 -115156935 + MT2B LTR ERVL 1 594 -7 1 631 272 301 67 77 chr12 6100640 6100849 -115156681 - LTR33A LTR ERVL 0 520 314 1 631 2738 313 56 30 chr12 6101625 6102758 -115154772 - Lx9 LINE L1 -177 7467 6306 1 631 444 37 0 0 chr12 6103291 6103345 -115154185 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 631 293 350 82 35 chr12 6104531 6104762 -115152768 - L4 LINE RTE -337 1692 1451 1 631 807 213 55 21 chr12 6104910 6105145 -115152385 - L1_Rod LINE L1 -471 5376 5134 1 631 285 53 35 18 chr12 6105178 6105235 -115152295 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 1 631 286 250 26 26 chr12 6105951 6106029 -115151501 + HERV16-int LTR ERVL 2033 2110 -2886 1 631 3835 60 22 6 chr12 6106283 6106913 -115150617 + L1Md_F2 LINE L1 6057 6582 0 1 631 22 0 0 0 chr12 6107219 6107241 -115150289 + AT_rich Low_complexity Low_complexity 1 22 0 1 631 369 269 162 7 chr12 6107440 6107582 -115149948 - Lx5 LINE L1 0 7050 6887 1 631 435 211 385 0 chr12 6107833 6107994 -115149536 + URR1A DNA MER1_type 1 223 -3 1 631 291 380 57 14 chr12 6108725 6109021 -115148509 - L2 LINE L2 -963 2456 2148 1 631 273 281 0 86 chr12 6109367 6109472 -115148058 - L1M3 LINE L1 -1036 5104 5009 1 631 225 132 0 0 chr12 6109581 6109619 -115147911 + (TCC)n Simple_repeat Simple_repeat 3 40 0 1 631 939 306 85 40 chr12 6109747 6110370 -115147160 + L1MB1 LINE L1 5278 5928 -240 1 631 318 353 114 62 chr12 6112178 6112643 -115144887 + MLT1J-int LTR MaLR 844 1332 -55 1 631 29 28 0 0 chr12 6113089 6113125 -115144405 + AT_rich Low_complexity Low_complexity 1 36 0 1 631 249 71 71 0 chr12 6113290 6113346 -115144184 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 1 631 249 310 43 8 chr12 6113542 6113659 -115143871 + MER103 DNA DNA 2 122 -44 1 631 1855 200 36 154 chr12 6114568 6115261 -115142269 + RMER19C LTR ERVK 1 611 0 1 631 207 265 0 0 chr12 6115514 6115563 -115141967 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 631 50 18 0 0 chr12 6116810 6116867 -115140663 + AT_rich Low_complexity Low_complexity 1 57 0 1 631 281 185 15 0 chr12 6117027 6117092 -115140438 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 631 521 272 41 106 chr12 6117092 6117310 -115140220 - B4A SINE B4 0 292 89 1 631 474 336 55 86 chr12 6118187 6118477 -115139053 + B4 SINE B4 3 283 -9 1 631 554 154 0 8 chr12 6118794 6118907 -115138623 + CT-rich Low_complexity Low_complexity 12 123 0 1 631 267 54 0 0 chr12 6118907 6118944 -115138586 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 631 763 270 23 19 chr12 6119084 6119299 -115138231 + ID_B1 SINE B4 3 218 -6 1 631 660 256 86 36 chr12 6120477 6120828 -115136702 - L1MCb LINE L1 -2237 4327 3953 1 631 443 293 59 6 chr12 6121196 6121500 -115136030 - L1MCb LINE L1 -2982 3582 3260 1 631 206 247 0 24 chr12 6122108 6122191 -115135339 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 1 631 1041 243 73 39 chr12 6122223 6122634 -115134896 - L1MCb LINE L1 -5083 962 538 1 631 261 359 37 13 chr12 6122920 6123107 -115134423 - L1MCb LINE L1 -6372 379 8 1 631 432 0 0 0 chr12 6123776 6123824 -115133706 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 631 554 193 103 17 chr12 6123843 6123959 -115133571 - B2_Mm2 SINE B2 -67 128 3 1 631 24 0 0 0 chr12 6123969 6123993 -115133537 + AT_rich Low_complexity Low_complexity 1 24 0 1 631 22 56 0 0 chr12 6125522 6125558 -115131972 + AT_rich Low_complexity Low_complexity 1 36 0 1 631 630 145 0 0 chr12 6126345 6126483 -115131047 + (GA)n Simple_repeat Simple_repeat 1 138 0 1 631 808 277 89 4 chr12 6127182 6127439 -115130091 + B4A SINE B4 1 279 -13 1 631 686 262 171 44 chr12 6127769 6128220 -115129310 - L1ME2 LINE L1 -2 6162 5655 1 631 228 57 0 86 chr12 6128796 6128854 -115128676 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 1 631 590 327 82 10 chr12 6128859 6129066 -115128464 - B4 SINE B4 -69 223 2 1 631 230 341 14 35 chr12 6129384 6129527 -115128003 + T-rich Low_complexity Low_complexity 4 143 0 1 631 279 320 31 0 chr12 6129407 6129504 -115128026 + (TCTCTG)n Simple_repeat Simple_repeat 4 103 0 1 631 899 317 56 70 chr12 6131262 6131794 -115125736 + MER74A LTR ERVL 34 558 0 1 631 543 250 66 29 chr12 6132260 6132396 -115125134 - RSINE1 SINE B4 -24 141 1 1 631 245 321 42 67 chr12 6132671 6132791 -115124739 - MamGypLTR1d LTR Gypsy -672 141 25 1 631 225 0 0 0 chr12 6133124 6133149 -115124381 + (T)n Simple_repeat Simple_repeat 1 25 0 1 631 450 0 0 0 chr12 6133392 6133442 -115124088 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1 631 719 287 5 36 chr12 6133732 6133927 -115123603 - B3 SINE B2 -5 211 23 1 631 234 0 0 0 chr12 6134502 6134528 -115123002 + (T)n Simple_repeat Simple_repeat 1 26 0 1 631 377 297 38 76 chr12 6134969 6135126 -115122404 + MIR SINE MIR 13 164 -104 1 631 352 320 81 17 chr12 6135765 6135937 -115121593 + MIR SINE MIR 57 239 -23 1 631 766 332 79 24 chr12 6136425 6136804 -115120726 - MLT1A1 LTR MaLR -3 405 6 1 631 3487 246 50 42 chr12 6137339 6139011 -115118519 + Lx5 LINE L1 5403 7043 -15 1 631 193 175 85 34 chr12 6139481 6139540 -115117990 - L3 LINE CR1 -2462 2027 1966 1 631 432 37 0 0 chr12 6139743 6139797 -115117733 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 631 572 318 107 40 chr12 6139810 6140062 -115117468 - B4A SINE B4 -22 270 2 1 631 183 347 49 39 chr12 6140155 6140257 -115117273 + MIRc SINE MIR 46 148 -120 1 631 1021 74 4 24 chr12 6141728 6141984 -115115546 + (CA)n Simple_repeat Simple_repeat 1 250 0 1 631 25 51 0 0 chr12 6142617 6142656 -115114874 + AT_rich Low_complexity Low_complexity 1 39 0 1 631 724 219 0 0 chr12 6143407 6143544 -115113986 - B1_Mus1 SINE Alu -10 138 2 1 631 879 256 0 63 chr12 6143630 6143851 -115113679 + B3 SINE B2 1 207 -9 1 631 4567 115 80 58 chr12 6144294 6144700 -115112830 - Lx3B LINE L1 -3 6970 6556 1 631 1184 61 0 0 chr12 6144700 6144847 -115112683 - B1_Mus2 SINE Alu 0 147 1 1 631 4567 115 80 58 chr12 6144847 6145263 -115112267 - Lx3B LINE L1 -418 6555 6130 1 631 762 270 125 98 chr12 6145277 6145341 -115112189 - MTEa LTR MaLR 0 379 337 1 631 480 89 0 0 chr12 6145341 6145420 -115112110 + (CCAA)n Simple_repeat Simple_repeat 2 80 0 1 631 216 0 0 0 chr12 6145427 6145451 -115112079 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 631 762 270 125 98 chr12 6145451 6145747 -115111783 - MTEa LTR MaLR -49 330 1 1 631 312 91 0 0 chr12 6146460 6146504 -115111026 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 631 378 365 31 12 chr12 6146507 6146762 -115110768 - L1ME3A LINE L1 -7 6166 5907 1 631 315 374 6 6 chr12 6146934 6147106 -115110424 - L1ME3A LINE L1 -514 5659 5488 1 631 272 265 51 36 chr12 6147459 6147596 -115109934 - L1ME3A LINE L1 -717 5447 5309 1 631 7763 56 11 1 chr12 6148183 6149632 -115107898 - L1Md_F2 LINE L1 0 6582 5120 1 631 2447 198 32 17 chr12 6149634 6150158 -115107372 - Lx4A LINE L1 -620 6438 5907 1 631 599 256 43 30 chr12 6150518 6150752 -115106778 - L1ME3A LINE L1 -3204 2942 2706 1 631 571 94 93 19 chr12 6150931 6150999 -115106531 + L1_Mus2 LINE L1 6451 6527 -39 1 631 4489 60 3 0 chr12 6150999 6151570 -115105960 + L1Md_F2 LINE L1 6009 6581 -1 1 631 571 94 93 19 chr12 6151570 6151609 -115105921 + L1_Mus2 LINE L1 6528 6566 0 1 631 236 324 119 32 chr12 6151606 6152008 -115105522 - L1ME3A LINE L1 -3599 2547 2111 1 631 36 40 0 0 chr12 6152092 6152142 -115105388 + AT_rich Low_complexity Low_complexity 1 50 0 1 631 345 75 0 0 chr12 6152200 6152253 -115105277 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 631 468 0 0 0 chr12 6152696 6152748 -115104782 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 631 268 281 79 68 chr12 6153570 6153849 -115103681 - Lx9 LINE L1 -20 7624 7343 1 631 204 163 0 0 chr12 6153851 6153894 -115103636 + CT-rich Low_complexity Low_complexity 2 44 0 1 631 1696 70 9 0 chr12 6154001 6154229 -115103301 - L1_Mus3 LINE L1 -273 6365 6136 1 631 1630 94 8 4 chr12 6154229 6154464 -115103066 + L1_Mus3 LINE L1 6397 6632 -6 1 631 941 228 25 38 chr12 6154516 6154753 -115102777 - Lx9 LINE L1 -452 7192 6959 1 631 781 279 122 22 chr12 6154764 6155267 -115102263 + Lx9 LINE L1 5524 6101 -1543 2 631 3332 52 7 1 chr12 6155328 6155902 -115101628 - L1_Mus1 LINE L1 -577 5990 5415 2 631 2298 58 14 0 chr12 6155902 6156197 -115101333 + L1_Mus1 LINE L1 6269 6567 0 2 631 630 376 60 16 chr12 6157353 6157721 -115099809 + LTR40b LTR ERVL 76 459 -3 2 631 297 97 42 0 chr12 6160010 6160082 -115097448 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 2 632 21 0 0 0 chr12 6161673 6161694 -115095836 + AT_rich Low_complexity Low_complexity 1 21 0 2 632 346 333 94 31 chr12 6161784 6162038 -115095492 + L1M4 LINE L1 3617 3886 -2260 2 632 310 363 35 0 chr12 6162158 6162329 -115095201 + L1M2 LINE L1 4640 4816 -1327 2 632 5852 29 1 0 chr12 6163055 6163827 -115093703 - L1Md_F2 LINE L1 -618 5964 5192 2 632 4882 54 5 2 chr12 6163827 6164441 -115093089 + L1Md_F2 LINE L1 5967 6582 0 2 632 4842 125 151 57 chr12 6164531 6164574 -115092956 - Lx LINE L1 -1 6635 6594 2 632 526 39 0 25 chr12 6164574 6164654 -115092876 + L1Md_F3 LINE L1 6492 6569 -15 2 632 10093 134 26 20 chr12 6164654 6166417 -115091113 - Lx LINE L1 -43 6593 4738 2 632 216 0 0 0 chr12 6166417 6166441 -115091089 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2 632 10093 159 21 3 chr12 6166441 6167093 -115090437 - Lx LINE L1 -1146 4737 4058 2 632 1074 241 76 87 chr12 6167090 6167570 -115089960 - L1VL2 LINE L1 -5850 485 22 2 632 3066 68 2 5 chr12 6167645 6168042 -115089488 - MTA_Mm LTR MaLR 0 396 1 2 632 513 291 105 23 chr12 6168313 6168774 -115088756 + L1M2 LINE L1 5205 5707 -584 2 632 387 0 0 0 chr12 6168894 6168937 -115088593 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2 632 1122 82 0 7 chr12 6169238 6169386 -115088144 + B1_Mus1 SINE Alu 2 148 0 2 632 201 74 0 0 chr12 6169386 6169413 -115088117 + (A)n Simple_repeat Simple_repeat 1 27 0 2 632 321 304 84 93 chr12 6169477 6169811 -115087719 - L1MEf LINE L1 -2853 3684 3351 2 632 459 0 0 0 chr12 6169811 6169862 -115087668 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2 632 1101 45 0 0 chr12 6169862 6169995 -115087535 - B1_Mus1 SINE Alu -11 137 5 2 632 321 304 84 93 chr12 6169995 6170101 -115087429 - L1MEf LINE L1 -3187 3350 3248 2 632 21 0 0 0 chr12 6170650 6170671 -115086859 + AT_rich Low_complexity Low_complexity 1 21 0 2 632 555 288 90 28 chr12 6170815 6171184 -115086346 - L1MEf LINE L1 -4425 2208 1817 2 632 307 369 101 32 chr12 6171276 6171553 -115085977 - L1MEf LINE L1 -4976 1657 1362 2 632 240 100 0 0 chr12 6171760 6171800 -115085730 + (CCTG)n Simple_repeat Simple_repeat 1 40 0 2 632 25 65 0 0 chr12 6173203 6173249 -115084281 + AT_rich Low_complexity Low_complexity 1 46 0 2 632 664 282 140 40 chr12 6173676 6174027 -115083503 + MLT1B LTR MaLR 4 389 -1 2 632 231 367 112 27 chr12 6176322 6176546 -115080984 - MIR SINE MIR -6 256 14 2 632 1051 373 109 16 chr12 6176693 6177371 -115080159 + LTR41B LTR ERVL 15 755 -3 2 632 531 280 36 31 chr12 6178510 6178826 -115078704 - L1M4 LINE L1 -2444 3696 3385 2 632 424 186 9 9 chr12 6179475 6179589 -115077941 + CT-rich Low_complexity Low_complexity 3 116 0 2 632 228 322 16 103 chr12 6179964 6180158 -115077372 - MLT1B LTR MaLR -101 289 113 2 632 652 93 18 18 chr12 6180537 6180647 -115076883 + (TCTCCC)n Simple_repeat Simple_repeat 6 115 0 2 632 4653 72 8 13 chr12 6181579 6182210 -115075320 - L1_Mus1 LINE L1 0 6567 5940 2 632 2986 87 78 0 chr12 6182213 6182638 -115074892 - L1_Mus1 LINE L1 0 6567 6110 2 632 826 89 0 0 chr12 6182638 6182761 -115074769 - L1_Mus1 LINE L1 -599 5968 5846 2 632 1998 110 14 0 chr12 6182748 6183040 -115074490 - L1_Mus3 LINE L1 -378 6260 5965 2 632 1119 16 0 0 chr12 6183040 6183169 -115074361 + (TTC)n Simple_repeat Simple_repeat 2 130 0 2 632 13519 107 6 19 chr12 6183175 6184496 -115073034 - L1_Mus1 LINE L1 0 6567 5248 2 632 273 98 0 0 chr12 6184496 6184537 -115072993 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 632 13519 114 20 7 chr12 6184537 6185999 -115071531 - L1_Mus1 LINE L1 -636 5247 3771 2 632 279 257 111 36 chr12 6186286 6186421 -115071109 + MER34A1 LTR ERV1 11 149 -422 2 632 681 13 0 0 chr12 6186523 6186601 -115070929 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 632 463 319 71 23 chr12 6186604 6186870 -115070660 - B4A SINE B4 -13 279 1 2 632 219 69 0 0 chr12 6187976 6188005 -115069525 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 632 858 231 55 10 chr12 6190495 6190696 -115066834 - B3 SINE B2 -5 211 2 2 632 1552 240 93 15 chr12 6191280 6191677 -115065853 + Lx6 LINE L1 7032 7459 -1 2 632 1940 184 62 12 chr12 6192011 6192412 -115065118 - MTC LTR MaLR 0 421 1 2 632 329 349 103 50 chr12 6192684 6192946 -115064584 + Charlie2a DNA MER1_type 31 306 -2555 2 632 904 212 113 0 chr12 6193159 6193362 -115064168 - URR1A DNA MER1_type 0 226 1 2 632 688 272 6 0 chr12 6193428 6193586 -115063944 - MTEb LTR MaLR -16 363 205 2 632 781 272 0 89 chr12 6193589 6193803 -115063727 + B3 SINE B2 2 196 -20 2 632 183 42 0 0 chr12 6193816 6193840 -115063690 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 2 632 793 185 12 0 chr12 6193845 6194018 -115063512 + G-rich Low_complexity Low_complexity 5 179 0 2 632 539 348 11 22 chr12 6194038 6194294 -115063236 + polypurine Low_complexity Low_complexity 1 253 0 2 632 325 289 84 78 chr12 6194298 6194452 -115063078 + HAL1-3A_ME LINE L1 2285 2439 -419 2 632 309 298 101 47 chr12 6194441 6194589 -115062941 + HAL1-3A_ME LINE L1 2284 2439 -419 2 632 236 335 51 32 chr12 6194697 6194854 -115062676 + Charlie2a DNA MER1_type 2701 2860 -1 2 632 293 296 78 17 chr12 6195485 6195629 -115061901 + L2a LINE L2 3219 3421 -5 2 632 436 356 70 35 chr12 6195923 6196351 -115061179 + L1MEa LINE L1 142 584 -5510 2 632 1923 316 52 11 chr12 6196609 6197319 -115060211 + Lx8 LINE L1 6484 7222 -251 2 632 409 306 106 7 chr12 6197897 6198170 -115059360 + L1MEa LINE L1 1188 1487 -4713 2 632 255 175 55 109 chr12 6198192 6198320 -115059210 + Lx4B LINE L1 6920 7040 -18 2 632 3431 84 19 14 chr12 6198447 6198931 -115058599 - L1_Mus1 LINE L1 0 6567 6082 2 632 30180 113 22 2 chr12 6200416 6206462 -115051068 - L1_Mus1 LINE L1 -2 6565 415 2 632 34144 88 8 11 chr12 6206710 6213101 -115044429 - L1Md_F2 LINE L1 0 6582 214 2 632 589 186 93 0 chr12 6213245 6213406 -115044124 + Lx9 LINE L1 7451 7626 -18 2 632 25 0 0 0 chr12 6213444 6213469 -115044061 + AT_rich Low_complexity Low_complexity 1 25 0 2 632 342 0 0 0 chr12 6213859 6213897 -115043633 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 632 183 232 128 92 chr12 6214381 6214490 -115043040 + L3 LINE CR1 4256 4368 -121 2 632 249 282 78 0 chr12 6214774 6214877 -115042653 - MIRb SINE MIR -38 230 120 2 632 184 241 86 65 chr12 6215041 6215134 -115042396 - L2c LINE L2 -207 3180 3086 2 632 310 348 29 7 chr12 6215937 6216073 -115041457 - L1ME3 LINE L1 -199 5963 5825 2 632 23 33 0 0 chr12 6216106 6216136 -115041394 + AT_rich Low_complexity Low_complexity 1 30 0 2 632 265 291 25 0 chr12 6218429 6218508 -115039022 + ID4_ SINE ID 1 81 -2 2 632 249 305 199 0 chr12 6218788 6218939 -115038591 + MIR SINE MIR 76 256 -6 2 632 194 322 0 0 chr12 6219331 6219390 -115038140 + L2 LINE L2 1978 2036 -1383 2 632 240 59 0 0 chr12 6219838 6219872 -115037658 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2 632 922 316 53 128 chr12 6219893 6220343 -115037187 - Lx7 LINE L1 -591 7105 6684 2 632 1498 146 28 4 chr12 6220343 6220597 -115036933 + Lx3B LINE L1 6712 6971 -2 2 632 922 316 53 128 chr12 6220597 6220857 -115036673 - Lx7 LINE L1 -1013 6683 6448 2 632 422 290 43 72 chr12 6220874 6221082 -115036448 + Lx8 LINE L1 7154 7355 -118 2 632 5764 150 36 29 chr12 6221191 6222183 -115035347 - Lx4A LINE L1 -50 7008 6010 2 632 237 103 26 0 chr12 6223534 6223573 -115033957 + ORR1D1 LTR MaLR 335 374 0 2 632 240 368 44 0 chr12 6223576 6223690 -115033840 + L2a LINE L2 3289 3407 -19 2 632 333 0 0 0 chr12 6224041 6224078 -115033452 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 632 571 314 54 23 chr12 6226149 6226410 -115031120 + B4 SINE B4 5 273 -19 2 632 1240 32 8 47 chr12 6226518 6226777 -115030753 + (GGGAGA)n Simple_repeat Simple_repeat 1 248 0 2 632 21 0 0 0 chr12 6226794 6226815 -115030715 + AT_rich Low_complexity Low_complexity 1 21 0 2 632 3903 114 28 0 chr12 6226815 6227422 -115030108 - L1_Mus3 LINE L1 -59 6579 5956 2 632 15522 100 8 21 chr12 6227432 6230655 -115026875 - L1_Mus1 LINE L1 0 6567 3396 2 632 6309 83 7 2 chr12 6230655 6232010 -115025520 - L1Md_F2 LINE L1 -96 6486 5123 2 632 15882 67 0 1 chr12 6232007 6234858 -115022672 - L1Md_F2 LINE L1 0 6582 3733 2 632 5838 106 1 14 chr12 6234850 6236232 -115021298 - L1Md_F2 LINE L1 -4102 1781 421 2 632 5024 73 5 1 chr12 6236873 6237661 -115019869 - L1Md_F2 LINE L1 -610 5956 5168 2 632 4155 97 10 5 chr12 6237661 6238250 -115019280 + L1Md_F2 LINE L1 5980 6571 -11 2 632 214 224 0 20 chr12 6238455 6238505 -115019025 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2 632 305 339 34 0 chr12 6238671 6238789 -115018741 + MLT1G1 LTR MaLR 456 577 -2 2 632 500 252 25 19 chr12 6239074 6239232 -115018298 + HAL1-2a_MD LINE L1 2347 2505 -519 2 632 395 245 32 0 chr12 6239770 6239864 -115017666 + B3A SINE B2 6 102 -96 2 632 674 304 0 11 chr12 6240174 6240192 -115017338 - B3A SINE B2 -16 182 165 2 632 387 0 0 0 chr12 6240192 6240235 -115017295 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 632 674 304 0 11 chr12 6240235 6240399 -115017131 - B3A SINE B2 -34 164 3 2 632 21 0 0 0 chr12 6240944 6240965 -115016565 + AT_rich Low_complexity Low_complexity 1 21 0 2 632 1122 286 102 14 chr12 6241145 6241489 -115016041 - ORR1D1 LTR MaLR 0 374 1 2 632 345 325 44 102 chr12 6241577 6241872 -115015658 + LTR33 LTR ERVL 36 313 -202 2 632 33904 47 0 3 chr12 6241876 6247304 -115010226 + L1Md_T LINE L1 81 5589 -297 2 632 8367 30 8 0 chr12 6247304 6248292 -115009238 + L1Md_T LINE L1 5590 6585 0 2 632 4835 103 20 3 chr12 6248318 6249020 -115008510 + ORR1A2-int LTR MaLR 1250 1963 0 2 632 1706 117 12 19 chr12 6249025 6249327 -115008203 + ORR1A2 LTR MaLR 11 295 -51 2 632 207 0 0 0 chr12 6249327 6249350 -115008180 + (A)n Simple_repeat Simple_repeat 1 23 0 2 632 235 330 0 52 chr12 6249468 6249564 -115007966 + LTR33 LTR ERVL 423 513 -2 2 632 375 23 0 0 chr12 6249852 6249896 -115007634 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 632 324 0 0 0 chr12 6249896 6249931 -115007599 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 632 217 344 0 0 chr12 6249957 6250018 -115007512 + L2c LINE L2 3272 3332 -55 2 632 582 15 0 0 chr12 6252053 6252120 -115005410 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 632 362 370 145 4 chr12 6252159 6252387 -115005143 + B4A SINE B4 33 292 0 3 632 357 43 0 0 chr12 6253158 6253205 -115004325 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 632 520 108 11 21 chr12 6253205 6253300 -115004230 + (GGGAGA)n Simple_repeat Simple_repeat 3 96 0 3 632 248 237 11 38 chr12 6253307 6253350 -115004180 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 632 2598 198 42 37 chr12 6253350 6253949 -115003581 - RLTR1D LTR ERV1 0 605 4 3 632 248 237 11 38 chr12 6253949 6254089 -115003441 + (TATG)n Simple_repeat Simple_repeat 2 137 0 3 632 7317 86 9 19 chr12 6254172 6255679 -115001851 - L1_Mus2 LINE L1 0 6566 5104 3 632 1147 70 0 0 chr12 6255679 6255822 -115001708 - B1_Mus1 SINE Alu -5 143 1 3 632 7317 108 0 47 chr12 6255822 6256203 -115001327 - L1_Mus2 LINE L1 -780 5103 4724 3 632 1910 185 8 64 chr12 6256431 6256824 -115000706 + ORR1C1 LTR MaLR 8 378 0 3 632 309 186 0 0 chr12 6257906 6257976 -114999554 + GA-rich Low_complexity Low_complexity 4 73 0 3 632 505 318 13 26 chr12 6258618 6258770 -114998760 + MTE2a LTR MaLR 174 323 -56 3 632 33 43 0 0 chr12 6258787 6258834 -114998696 + AT_rich Low_complexity Low_complexity 1 47 0 3 632 301 260 106 33 chr12 6258846 6258997 -114998533 - ORSL DNA Tip100 -113 162 1 3 632 1265 118 16 0 chr12 6259039 6259226 -114998304 - B2_Mm2 SINE B2 -2 193 4 3 632 670 264 68 5 chr12 6259376 6259597 -114997933 + Lx8 LINE L1 7234 7468 -5 3 632 24 32 0 0 chr12 6259598 6259629 -114997901 + AT_rich Low_complexity Low_complexity 1 31 0 3 632 277 134 197 13 chr12 6259927 6260041 -114997489 - L1_Mus3 LINE L1 -1 6637 6507 3 632 246 261 21 54 chr12 6262616 6262709 -114994821 + MamGypLTR2b LTR Gypsy 674 763 -159 3 632 414 0 0 0 chr12 6263986 6264032 -114993498 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 632 22 56 0 0 chr12 6264312 6264348 -114993182 + AT_rich Low_complexity Low_complexity 1 36 0 3 632 27 0 0 0 chr12 6265210 6265237 -114992293 + AT_rich Low_complexity Low_complexity 1 27 0 3 632 6552 118 36 11 chr12 6265853 6266880 -114990650 + Lx3A LINE L1 5929 6981 0 3 632 233 269 60 70 chr12 6266910 6267010 -114990520 + Kanga1b DNA Tc2 155 253 -526 3 632 194 81 27 0 chr12 6268176 6268213 -114989317 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 3 632 1126 75 7 0 chr12 6268213 6268359 -114989171 - B1_Mus1 SINE Alu 0 148 2 3 632 202 338 0 0 chr12 6272079 6272150 -114985380 + (CAT)n Simple_repeat Simple_repeat 1 71 0 3 632 456 19 0 0 chr12 6274911 6274964 -114982566 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 632 407 391 30 30 chr12 6275060 6275297 -114982233 - B4A SINE B4 -55 237 1 3 632 576 220 71 6 chr12 6275297 6275479 -114982051 - MLT-int LTR MaLR -116 1619 1426 3 632 269 313 0 0 chr12 6275504 6275571 -114981959 + MTE2a LTR MaLR 26 92 -287 3 632 853 322 46 19 chr12 6275582 6275889 -114981641 + MTE2a LTR MaLR 61 375 -4 3 632 408 426 74 0 chr12 6275891 6276093 -114981437 - MLT-int LTR MaLR -305 1430 1214 3 632 366 341 21 147 chr12 6276171 6276648 -114980882 + L1ME1 LINE L1 5763 6179 0 3 632 371 337 146 15 chr12 6277019 6277287 -114980243 + MLT1A0 LTR MaLR 10 312 -53 3 632 344 22 22 0 chr12 6277623 6277668 -114979862 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3 632 372 43 0 0 chr12 6277807 6277853 -114979677 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 632 4251 189 39 11 chr12 6278015 6278806 -114978724 + RLTR25B LTR ERVK 1 813 -215 3 632 824 244 17 29 chr12 6278908 6279081 -114978449 + B3 SINE B2 45 215 -1 3 632 229 206 14 29 chr12 6279089 6279159 -114978371 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 632 409 346 49 79 chr12 6279226 6279555 -114977975 - MER67B LTR ERV1 -300 361 43 3 632 287 280 39 26 chr12 6279566 6279643 -114977887 + MLT1G-int LTR MaLR 1325 1402 -7 3 632 333 301 96 17 chr12 6279656 6279771 -114977759 + MLT1G LTR MaLR 10 133 -458 3 632 602 335 73 101 chr12 6279782 6280150 -114977380 + MTE2a LTR MaLR 2 359 -20 3 632 1902 320 104 15 chr12 6280511 6281530 -114976000 - Lx8 LINE L1 -28 7445 6336 3 632 33 0 0 0 chr12 6281621 6281654 -114975876 + AT_rich Low_complexity Low_complexity 1 33 0 3 632 3092 282 57 60 chr12 6281655 6282888 -114974642 - Lx9 LINE L1 -16 7628 6400 3 632 318 292 112 58 chr12 6283017 6283275 -114974255 - Lx9 LINE L1 -1537 6107 5836 3 632 357 24 0 0 chr12 6283395 6283437 -114974093 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 632 1097 65 14 0 chr12 6283439 6283577 -114973953 - B1_Mm SINE Alu -6 141 2 3 632 1230 49 0 18 chr12 6283667 6283834 -114973696 - L1Md_F2 LINE L1 -1 6581 6418 3 632 9264 103 2 111 chr12 6283834 6285160 -114972370 + L1_Mm LINE L1 3986 5314 -569 3 632 4099 82 0 19 chr12 6285160 6285729 -114971801 + L1Md_F2 LINE L1 6013 6570 -12 3 632 488 264 71 30 chr12 6285729 6285897 -114971633 - MER58B DNA MER1_type -24 317 143 3 632 9264 103 2 111 chr12 6285897 6286086 -114971444 + L1_Mm LINE L1 5315 5487 -396 3 632 801 52 0 0 chr12 6286082 6286179 -114971351 + L1_Mm LINE L1 5410 5506 -377 3 632 2388 60 34 6 chr12 6286179 6286520 -114971010 - IAPLTR2b LTR ERVK 0 385 1 3 632 7367 81 12 1 chr12 6286520 6287547 -114969983 + L1_Mus1 LINE L1 5526 6563 -4 3 632 850 213 37 2 chr12 6289256 6289449 -114968081 - B3A SINE B2 -6 210 14 3 632 802 313 46 58 chr12 6289989 6290406 -114967124 - BGLII_B LTR ERVK -29 412 1 3 633 941 187 113 0 chr12 6292606 6292809 -114964721 - URR1A DNA MER1_type 0 226 1 3 633 24 0 0 0 chr12 6292881 6292905 -114964625 + AT_rich Low_complexity Low_complexity 1 24 0 3 633 232 316 50 0 chr12 6293074 6293213 -114964317 - Lx9 LINE L1 -136 7508 7363 3 633 2168 122 162 5 chr12 6294136 6294524 -114963006 - RLTR44B LTR ERVK 0 449 1 3 633 21 0 0 0 chr12 6295106 6295127 -114962403 + AT_rich Low_complexity Low_complexity 1 21 0 3 633 385 199 26 37 chr12 6295140 6295254 -114962276 - L1MA5 LINE L1 -61 6239 6128 3 633 1528 195 9 30 chr12 6295333 6295671 -114961859 + L1_Mur2 LINE L1 5242 5572 -305 3 633 851 240 10 104 chr12 6295668 6295956 -114961574 + Lx2B LINE L1 6728 6988 -12 3 633 787 127 17 0 chr12 6295969 6296087 -114961443 - MTC LTR MaLR -301 120 1 3 633 205 329 110 14 chr12 6296118 6296263 -114961267 + L2c LINE L2 3229 3387 0 3 633 643 12 24 0 chr12 6296350 6296434 -114961096 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 3 633 288 322 0 33 chr12 6296448 6296538 -114960992 + MTD LTR MaLR 35 121 -300 3 633 567 299 73 57 chr12 6296743 6296803 -114960727 + B4A SINE B4 1 53 -239 3 633 279 0 0 0 chr12 6296803 6296834 -114960696 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 633 567 307 68 65 chr12 6296834 6297077 -114960453 + B4A SINE B4 54 292 0 3 633 332 292 65 68 chr12 6297351 6297645 -114959885 - Lx9 LINE L1 -22 7622 7330 3 633 7799 147 30 2 chr12 6298194 6299478 -114958052 - Lx2 LINE L1 0 6997 5693 3 633 297 0 0 0 chr12 6299498 6299531 -114957999 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 3 633 22366 127 25 6 chr12 6299755 6303835 -114953695 + L1VL4 LINE L1 667 4836 -1047 3 633 3493 113 0 36 chr12 6303837 6304459 -114953071 + L1_Mus2 LINE L1 6052 6566 0 3 633 227 204 0 0 chr12 6304663 6304712 -114952818 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 633 465 336 31 45 chr12 6305336 6305623 -114951907 - MLT1B LTR MaLR 0 390 108 3 633 228 122 0 0 chr12 6306957 6306998 -114950532 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 633 450 161 0 11 chr12 6307783 6307871 -114949659 - B2_Mm2 SINE B2 -7 188 102 3 633 403 213 27 0 chr12 6307871 6307946 -114949584 - B1_Mur4 SINE Alu -72 78 2 3 633 495 314 6 2 chr12 6308737 6308971 -114948559 - Lx7 LINE L1 -1833 5863 5629 3 633 764 271 58 15 chr12 6309114 6309320 -114948210 + B3 SINE B2 1 215 -1 3 633 22 80 0 0 chr12 6309326 6309376 -114948154 + AT_rich Low_complexity Low_complexity 1 50 0 3 633 235 330 122 10 chr12 6309737 6309835 -114947695 - MLT1J2 LTR MaLR -134 314 206 3 633 226 300 11 11 chr12 6310093 6310184 -114947346 + T-rich Low_complexity Low_complexity 2 92 0 3 633 1355 157 4 26 chr12 6312840 6313069 -114944461 - URR1B DNA MER1_type 0 225 2 3 633 681 24 0 0 chr12 6315019 6315102 -114942428 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 633 360 0 0 0 chr12 6315420 6315460 -114942070 + (TTCTC)n Simple_repeat Simple_repeat 1 40 0 3 633 211 122 0 68 chr12 6315944 6315988 -114941542 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 3 633 1113 68 0 27 chr12 6315989 6316139 -114941391 - B1_Mus1 SINE Alu -2 146 1 3 633 369 0 0 0 chr12 6316611 6316652 -114940878 + (CCCTAA)n Simple_repeat Simple_repeat 6 46 0 3 633 514 208 10 0 chr12 6317609 6317701 -114939829 - URR1B DNA MER1_type -1 224 132 3 633 1926 147 19 9 chr12 6317701 6318016 -114939514 + ORR1A3 LTR MaLR 1 318 -8 3 633 908 147 7 0 chr12 6318038 6318174 -114939356 - URR1B DNA MER1_type -89 136 1 3 633 369 293 14 105 chr12 6318174 6318248 -114939282 + CYRA11_Mm Unknown Y-chromosome 262 452 -165 3 633 555 66 0 0 chr12 6318441 6318517 -114939013 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 3 633 240 35 0 0 chr12 6318915 6318944 -114938586 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 3 633 213 282 102 68 chr12 6319051 6319169 -114938361 + MIRb SINE MIR 136 257 -11 3 633 885 259 5 5 chr12 6319749 6319951 -114937579 + B3 SINE B2 1 202 -14 3 633 25 31 0 0 chr12 6319969 6320001 -114937529 + AT_rich Low_complexity Low_complexity 1 32 0 3 633 477 0 0 0 chr12 6321549 6321602 -114935928 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 633 279 0 0 0 chr12 6322271 6322302 -114935228 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 633 219 189 0 0 chr12 6322556 6322609 -114934921 + A-rich Low_complexity Low_complexity 1 53 0 3 633 5550 229 82 83 chr12 6322652 6324116 -114933414 + Lx7 LINE L1 5844 7335 -361 4 633 787 134 6 37 chr12 6324116 6324279 -114933251 - Lx LINE L1 0 6654 6497 4 633 5550 229 82 83 chr12 6324279 6324669 -114932861 + Lx7 LINE L1 7336 7696 0 4 633 599 185 25 8 chr12 6324902 6325022 -114932508 + MT2A LTR ERVL 1 122 -411 4 633 1170 260 105 46 chr12 6325025 6325416 -114932114 - MTD LTR MaLR -5 414 1 4 633 859 325 60 0 chr12 6325416 6325678 -114931852 + MT2A LTR ERVL 116 393 -140 4 633 893 184 36 139 chr12 6325804 6326107 -114931423 + Lx9 LINE L1 7372 7643 -1 4 633 22 0 0 0 chr12 6326589 6326611 -114930919 + AT_rich Low_complexity Low_complexity 1 22 0 4 633 582 15 0 0 chr12 6326731 6326798 -114930732 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 633 402 57 0 0 chr12 6328396 6328449 -114929081 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 633 3878 140 68 6 chr12 6328459 6329126 -114928404 - Lx LINE L1 -27 6627 5920 4 633 322 213 26 26 chr12 6329147 6329224 -114928306 + B3 SINE B2 39 115 -101 4 633 2116 102 20 3 chr12 6329459 6329763 -114927767 + RLTR27 LTR ERVK 1 309 0 4 633 224 290 14 0 chr12 6330119 6330188 -114927342 + (TTCA)n Simple_repeat Simple_repeat 3 72 0 4 633 21 0 0 0 chr12 6330388 6330409 -114927121 + AT_rich Low_complexity Low_complexity 1 21 0 4 633 192 333 65 29 chr12 6330751 6330921 -114926609 - L2a LINE L2 0 3426 3251 4 633 2150 155 34 12 chr12 6330926 6331337 -114926193 + MTC LTR MaLR 1 420 -1 4 633 4664 183 48 153 chr12 6331338 6331589 -114925941 + MTC-int LTR MaLR 1 214 -1044 4 633 1793 35 0 46 chr12 6331589 6331826 -114925704 - L1Md_F3 LINE L1 -12 6572 6347 4 633 4664 183 48 153 chr12 6331826 6332976 -114924554 + MTC-int LTR MaLR 215 1255 -3 4 633 1770 162 169 8 chr12 6332981 6333342 -114924188 + MTC LTR MaLR 3 421 0 4 633 545 254 71 117 chr12 6334441 6334582 -114922948 + B3A SINE B2 5 152 -46 4 633 545 72 12 0 chr12 6334582 6334665 -114922865 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 633 321 254 71 117 chr12 6334665 6334719 -114922811 + B2_Mm2 SINE B2 143 190 -5 4 633 245 208 19 0 chr12 6335720 6335773 -114921757 + CT-rich Low_complexity Low_complexity 4 57 0 4 633 1529 136 11 18 chr12 6336642 6336920 -114920610 - Lx2 LINE L1 0 6997 6722 4 633 2251 187 40 103 chr12 6337036 6337591 -114919939 - RLTR24 LTR ERV1 0 529 10 4 633 493 353 142 27 chr12 6337759 6338237 -114919293 + MER68 LTR ERVL 22 554 -9 4 633 647 120 0 8 chr12 6338498 6338616 -114918914 + (GA)n Simple_repeat Simple_repeat 2 118 0 4 633 797 145 15 0 chr12 6338995 6339126 -114918404 + URR1A DNA MER1_type 82 214 -12 4 633 36004 42 14 11 chr12 6339508 6341152 -114916378 - L1Md_T LINE L1 -2 6580 4914 4 633 233 183 46 77 chr12 6341152 6341217 -114916313 + RMER20A LTR ERVK 186 248 -268 4 633 36004 42 14 11 chr12 6341217 6344873 -114912657 - L1Md_T LINE L1 -2 4913 1203 4 633 6670 55 34 19 chr12 6344839 6345743 -114911787 - L1Md_Gf LINE L1 -5380 1142 225 4 633 307 182 0 0 chr12 6345877 6345932 -114911598 - HAL1-3A_ME LINE L1 -835 2023 1969 4 633 2722 31 0 0 chr12 6346944 6347261 -114910269 - L1Md_F2 LINE L1 -330 6252 5936 4 633 2725 22 0 0 chr12 6347258 6347573 -114909957 + L1Md_F2 LINE L1 6241 6555 -27 4 633 331 261 36 7 chr12 6348177 6348316 -114909214 + (CAAGA)n Simple_repeat Simple_repeat 2 144 0 4 633 370 312 111 89 chr12 6350152 6350532 -114906998 + MLT1A1 LTR MaLR 21 408 0 4 633 299 361 38 6 chr12 6353652 6353811 -114903719 - L2a LINE L2 0 3426 3263 4 633 26 0 0 0 chr12 6353877 6353903 -114903627 + AT_rich Low_complexity Low_complexity 1 26 0 4 633 21 57 0 0 chr12 6355911 6355946 -114901584 + AT_rich Low_complexity Low_complexity 1 35 0 4 633 309 51 0 0 chr12 6356330 6356369 -114901161 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 4 633 459 0 0 0 chr12 6356396 6356447 -114901083 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 633 628 329 12 0 chr12 6356451 6356618 -114900912 - B3A SINE B2 -27 171 3 4 633 396 343 62 14 chr12 6356741 6356886 -114900644 + MER21B LTR ERV1 1 152 -711 4 633 658 330 81 18 chr12 6357138 6357410 -114900120 + MER21B LTR ERV1 477 765 -98 4 633 690 122 0 0 chr12 6357986 6358093 -114899437 + (TA)n Simple_repeat Simple_repeat 2 108 0 4 633 567 43 0 0 chr12 6358934 6359004 -114898526 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 633 768 178 0 0 chr12 6359171 6359317 -114898213 + GA-rich Low_complexity Low_complexity 3 148 0 4 633 755 50 0 10 chr12 6360469 6360570 -114896960 + (TTCCC)n Simple_repeat Simple_repeat 1 100 0 4 633 913 98 7 7 chr12 6360573 6360717 -114896813 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 4 633 520 156 62 0 chr12 6361057 6361153 -114896377 + B1_Mm SINE Alu 46 147 0 4 633 227 162 171 29 chr12 6361193 6361263 -114896267 - Lx8 LINE L1 -4 7469 7390 4 633 739 278 15 44 chr12 6361252 6361523 -114896007 + Lx8 LINE L1 6961 7223 -250 4 633 30120 100 7 5 chr12 6361988 6364351 -114893179 - L1_Mus1 LINE L1 -2 6565 4205 4 633 504 0 0 0 chr12 6364351 6364407 -114893123 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 633 30120 124 19 3 chr12 6364407 6368133 -114889397 - L1_Mus1 LINE L1 -1679 4204 400 4 633 1024 99 0 7 chr12 6368238 6368380 -114889150 + B1_Mus2 SINE Alu 1 141 -6 4 633 239 0 32 0 chr12 6368381 6368412 -114889118 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 4 633 195 42 0 0 chr12 6368422 6368446 -114889084 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 4 633 225 0 0 0 chr12 6368456 6368481 -114889049 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 633 8280 62 7 4 chr12 6368845 6370618 -114886912 - L1Md_F2 LINE L1 -10 6572 4791 4 633 897 309 45 48 chr12 6371842 6372199 -114885331 - MLT1A0 LTR MaLR 0 365 10 4 633 504 0 0 0 chr12 6372268 6372324 -114885206 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 4 633 1332 118 27 18 chr12 6372767 6372991 -114884539 - Lx2 LINE L1 0 6997 6772 4 633 195 343 184 23 chr12 6373933 6374151 -114883379 + MIRm SINE MIR 24 276 0 4 633 247 361 155 29 chr12 6373979 6374153 -114883377 + L2b LINE L2 3180 3375 0 4 633 201 74 0 0 chr12 6374849 6374876 -114882654 + (T)n Simple_repeat Simple_repeat 1 27 0 4 633 697 298 33 42 chr12 6374947 6375240 -114882290 - MTEb LTR MaLR 0 379 89 4 633 1025 189 16 0 chr12 6375245 6375436 -114882094 - URR1B DNA MER1_type 0 225 32 4 633 286 274 107 0 chr12 6375452 6375536 -114881994 - MTEb LTR MaLR -286 93 1 4 633 655 256 8 0 chr12 6375967 6376096 -114881434 - B3 SINE B2 -86 130 1 4 633 324 48 0 0 chr12 6376935 6376977 -114880553 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 633 4372 43 0 13 chr12 6377125 6377662 -114879868 - L1Md_F2 LINE L1 0 6582 6053 4 633 772 113 53 0 chr12 6377784 6377917 -114879613 + L1Md_F2 LINE L1 6443 6582 0 4 633 287 291 25 143 chr12 6378197 6378434 -114879096 + MLT1B LTR MaLR 62 270 -120 4 633 384 22 0 0 chr12 6378916 6378961 -114878569 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 633 345 299 34 11 chr12 6379053 6379141 -114878389 - B1_Mm SINE Alu -56 91 2 4 633 279 274 9 19 chr12 6379336 6379444 -114878086 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 633 466 286 29 19 chr12 6379446 6379678 -114877852 - Lx7 LINE L1 -1787 5909 5674 4 633 408 40 0 0 chr12 6381605 6381655 -114875875 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 633 469 307 64 60 chr12 6382606 6382871 -114874659 + B4A SINE B4 2 275 -17 4 633 22 56 0 0 chr12 6383277 6383313 -114874217 + AT_rich Low_complexity Low_complexity 1 36 0 4 633 591 321 46 20 chr12 6383775 6383972 -114873558 + ID_B1 SINE B4 6 207 -17 4 633 710 101 9 0 chr12 6383989 6384098 -114873432 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 633 198 143 0 0 chr12 6384891 6384926 -114872604 + (TCCCC)n Simple_repeat Simple_repeat 5 39 0 4 633 297 281 0 24 chr12 6385624 6385708 -114871822 + GA-rich Low_complexity Low_complexity 4 85 0 4 633 895 328 43 34 chr12 6385830 6386388 -114871142 + L1ME3A LINE L1 5606 6168 -5 4 633 566 314 103 89 chr12 6386859 6386971 -114870559 + ORR1E LTR MaLR 5 116 -243 4 633 405 0 0 0 chr12 6386971 6387016 -114870514 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 633 566 314 103 89 chr12 6387016 6387252 -114870278 + ORR1E LTR MaLR 117 357 -2 4 633 234 0 0 0 chr12 6389704 6389730 -114867800 + (T)n Simple_repeat Simple_repeat 1 26 0 4 633 21 71 0 0 chr12 6389796 6389838 -114867692 + AT_rich Low_complexity Low_complexity 1 42 0 4 633 296 292 9 54 chr12 6392628 6392740 -114864790 - MER57-int LTR ERV1 -273 7264 7158 4 633 192 200 0 0 chr12 6393843 6393888 -114863642 + (TTA)n Simple_repeat Simple_repeat 1 45 0 4 633 264 186 0 0 chr12 6393886 6393945 -114863585 + (TAG)n Simple_repeat Simple_repeat 1 59 0 4 633 460 279 155 71 chr12 6394342 6394783 -114862747 - MLT1B LTR MaLR -2 465 3 4 633 432 0 0 0 chr12 6395430 6395478 -114862052 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 633 441 0 0 0 chr12 6396073 6396122 -114861408 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 633 296 311 255 0 chr12 6396125 6396231 -114861299 - RSINE1 SINE B4 -26 139 7 4 633 446 279 57 28 chr12 6397043 6397220 -114860310 + Tigger13a DNA MER2_type 590 771 0 4 633 25 31 0 0 chr12 6397382 6397414 -114860116 + AT_rich Low_complexity Low_complexity 1 32 0 4 633 27 0 0 0 chr12 6398565 6398592 -114858938 + AT_rich Low_complexity Low_complexity 1 27 0 4 633 333 0 0 0 chr12 6401063 6401100 -114856430 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 633 363 23 0 0 chr12 6401192 6401236 -114856294 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 633 662 282 42 42 chr12 6401243 6401393 -114856137 - B3 SINE B2 -27 189 38 4 633 1100 63 7 7 chr12 6401393 6401537 -114855993 + B1_Mus2 SINE Alu 1 144 -3 4 633 1399 11 17 11 chr12 6401537 6401713 -114855817 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 4 633 662 282 42 42 chr12 6401713 6401750 -114855780 - B3 SINE B2 -179 37 2 4 633 25 65 0 0 chr12 6402073 6402119 -114855411 + AT_rich Low_complexity Low_complexity 1 46 0 4 633 382 360 176 41 chr12 6403302 6403693 -114853837 - LTR33B LTR ERVL -38 465 22 4 633 2721 63 3 0 chr12 6403694 6404045 -114853485 - L1Md_F2 LINE L1 -12 6570 6219 4 633 207 178 44 0 chr12 6404819 6404864 -114852666 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 633 650 13 0 12 chr12 6405212 6405292 -114852238 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 5 633 408 258 0 0 chr12 6405332 6405425 -114852105 - L1_Rod LINE L1 -127 5720 5628 5 633 1051 320 44 15 chr12 6405430 6405884 -114851646 - Lx8 LINE L1 -163 7310 6844 5 633 1058 198 61 0 chr12 6405969 6406181 -114851349 + URR1A DNA MER1_type 2 226 0 5 633 493 82 0 0 chr12 6408277 6408350 -114849180 - B1_Mur4 SINE Alu 0 150 78 5 633 351 326 62 34 chr12 6408587 6408733 -114848797 + RSINE1 SINE B4 12 161 -4 5 633 356 329 45 56 chr12 6408874 6408918 -114848612 - CYRA11_Mm Unknown Y-chromosome -182 435 395 5 633 1231 211 5 5 chr12 6408918 6409142 -114848388 + URR1B DNA MER1_type 2 225 0 5 633 2639 52 0 0 chr12 6410105 6410431 -114847099 + IAPEY2_LTR LTR ERVK 32 357 0 5 633 386 280 17 34 chr12 6410554 6410654 -114846876 - PB1D10 SINE Alu -7 113 5 5 633 205 280 40 0 chr12 6411095 6411145 -114846385 - L2c LINE L2 0 3387 3336 5 633 190 362 29 0 chr12 6411098 6411167 -114846363 - MIRm SINE MIR -1 275 205 5 633 299 342 42 50 chr12 6412672 6412792 -114844738 + B1F1 SINE Alu 1 119 -1 5 633 355 333 29 14 chr12 6413287 6413427 -114844103 - MER104 DNA Tc2 -7 174 33 5 633 239 104 21 0 chr12 6413595 6413643 -114843887 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 5 633 31818 79 2 7 chr12 6413723 6416561 -114840969 - L1Md_F2 LINE L1 -12 6570 3745 5 633 3017 32 0 0 chr12 6416561 6416907 -114840623 + ORR1A0 LTR MaLR 1 346 0 5 633 13450 60 19 1 chr12 6416907 6418666 -114838864 + ORR1A0-int LTR MaLR 1 1792 0 5 633 3034 26 0 0 chr12 6418666 6419012 -114838518 + ORR1A0 LTR MaLR 1 346 0 5 633 31818 84 2 6 chr12 6419012 6421301 -114836229 - L1Md_F2 LINE L1 -2139 3744 1469 5 633 773 29 0 0 chr12 6421301 6421405 -114836125 + L1Md_T LINE L1 6476 6579 -3 5 633 1731 134 58 116 chr12 6421540 6421886 -114835644 + ORR1A2 LTR MaLR 1 326 -1 5 633 24 0 0 0 chr12 6422339 6422363 -114835167 + AT_rich Low_complexity Low_complexity 1 24 0 5 634 548 250 160 6 chr12 6423255 6423424 -114834106 - ORR1D1 LTR MaLR -10 360 166 5 634 408 123 0 0 chr12 6423443 6423516 -114834014 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 634 698 257 29 0 chr12 6423518 6423693 -114833837 - ORR1D1 LTR MaLR -184 190 11 5 634 22 56 0 0 chr12 6424083 6424119 -114833411 + AT_rich Low_complexity Low_complexity 1 36 0 5 634 342 245 21 31 chr12 6424570 6424667 -114832863 - MLT1H LTR MaLR 0 555 460 5 634 526 303 143 54 chr12 6424683 6425018 -114832512 - MLT1H LTR MaLR -208 387 33 5 634 180 0 0 0 chr12 6425697 6425717 -114831813 + (T)n Simple_repeat Simple_repeat 1 20 0 5 634 846 297 105 21 chr12 6425754 6426126 -114831404 + Lx8 LINE L1 6931 7333 -140 5 634 26 50 0 0 chr12 6426456 6426496 -114831034 + AT_rich Low_complexity Low_complexity 1 40 0 5 634 543 268 72 25 chr12 6426827 6427004 -114830526 + B3 SINE B2 1 198 0 5 634 22 35 0 0 chr12 6427523 6427552 -114829978 + AT_rich Low_complexity Low_complexity 1 29 0 5 634 190 338 0 39 chr12 6429190 6429267 -114828263 + MIRm SINE MIR 203 276 0 5 634 438 369 78 31 chr12 6429880 6430202 -114827328 + MER119 DNA MER1_type 37 373 -210 5 634 394 85 16 0 chr12 6430232 6430300 -114827230 - L1_Mur2 LINE L1 -551 5332 5267 5 634 3703 66 13 0 chr12 6430300 6430771 -114826759 + L1_Mus1 LINE L1 6091 6567 0 5 634 7063 99 23 6 chr12 6431077 6432096 -114825434 + Lx LINE L1 5616 6651 -3 5 634 1144 55 7 7 chr12 6433415 6433562 -114823968 - B1_Mm SINE Alu 0 147 1 5 634 21483 163 11 18 chr12 6433708 6436085 -114821445 + L1VL4 LINE L1 492 2870 -3013 5 634 734 0 0 11 chr12 6436085 6436172 -114821358 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 5 634 21483 137 11 20 chr12 6436172 6437360 -114820170 + L1VL4 LINE L1 2871 4045 -1838 5 634 639 95 259 0 chr12 6437360 6437476 -114820054 + B1_Mus1 SINE Alu 1 146 -2 5 634 21483 137 11 20 chr12 6437476 6438400 -114819130 + L1VL4 LINE L1 4046 4945 -938 5 634 37293 45 3 4 chr12 6438390 6444723 -114812807 - L1Md_T LINE L1 0 6585 161 5 634 1087 188 27 0 chr12 6444721 6444944 -114812586 + L1VL4 LINE L1 4922 5150 -733 5 634 948 268 164 3 chr12 6444944 6445273 -114812257 - MTD LTR MaLR -33 386 5 5 634 227 335 36 97 chr12 6445351 6445516 -114812014 - ORR1D2 LTR MaLR -208 162 8 5 634 471 295 28 83 chr12 6445846 6445906 -114811624 - B3 SINE B2 -6 210 164 5 634 717 12 0 0 chr12 6445906 6445988 -114811542 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 634 471 295 28 83 chr12 6445988 6446145 -114811385 - B3 SINE B2 -53 163 5 5 634 846 0 0 0 chr12 6446452 6446546 -114810984 + (TTC)n Simple_repeat Simple_repeat 2 95 0 5 634 409 192 0 0 chr12 6446671 6446744 -114810786 - MT2B LTR ERVL -519 82 10 5 634 185 196 20 0 chr12 6448803 6448854 -114808676 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 634 26 50 0 0 chr12 6449125 6449165 -114808365 + AT_rich Low_complexity Low_complexity 1 40 0 5 634 22 0 0 0 chr12 6450377 6450399 -114807131 + AT_rich Low_complexity Low_complexity 1 22 0 5 634 189 0 0 0 chr12 6450501 6450522 -114807008 + (T)n Simple_repeat Simple_repeat 1 21 0 5 634 546 16 0 0 chr12 6452791 6452854 -114804676 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 634 40 37 0 0 chr12 6452895 6452949 -114804581 + AT_rich Low_complexity Low_complexity 1 54 0 5 634 338 42 21 0 chr12 6453264 6453312 -114804218 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 634 432 0 0 0 chr12 6453312 6453359 -114804171 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 634 250 365 29 0 chr12 6454531 6454635 -114802895 + PB1D7 SINE Alu 1 107 -13 5 634 1002 125 17 0 chr12 6455918 6456094 -114801436 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 5 634 223 28 0 53 chr12 6456094 6456132 -114801398 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 5 634 195 42 0 0 chr12 6456202 6456226 -114801304 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 634 226 170 18 70 chr12 6456845 6456902 -114800628 + L1MD3 LINE L1 7640 7693 -302 5 634 426 315 97 66 chr12 6458508 6459022 -114798508 - MT2A LTR ERVL -3 530 1 5 634 3844 221 64 7 chr12 6459263 6460767 -114796763 + Lx5 LINE L1 4956 6790 -670 5 634 7624 40 12 10 chr12 6460770 6461708 -114795822 - L1Md_F2 LINE L1 -12 6570 5631 5 634 1840 302 9 28 chr12 6461707 6462280 -114795250 + Lx5 LINE L1 6482 7043 -7 5 634 396 0 0 0 chr12 6462701 6462745 -114794785 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 634 1521 97 22 9 chr12 6462745 6462975 -114794555 - Lx3_Mus LINE L1 -20 6989 6757 5 634 948 290 48 84 chr12 6463711 6464069 -114793461 - ORR1E LTR MaLR 0 359 15 5 634 331 319 44 0 chr12 6464077 6464190 -114793340 + B1F SINE Alu 11 128 -21 5 634 1499 259 62 37 chr12 6464255 6464820 -114792710 + L1MC3 LINE L1 6985 7563 -222 5 634 195 42 0 0 chr12 6464827 6464851 -114792679 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 634 416 314 14 7 chr12 6466102 6466243 -114791287 - B1F2 SINE Alu -5 144 3 5 634 4154 34 0 0 chr12 6466464 6466958 -114790572 - L1Md_F3 LINE L1 -474 6110 5617 5 634 3772 34 6 33 chr12 6466958 6467445 -114790085 + L1Md_F3 LINE L1 6109 6582 -2 5 634 184 383 49 14 chr12 6467860 6468003 -114789527 + L2 LINE L2 2323 2470 -949 5 634 21 0 0 0 chr12 6468895 6468916 -114788614 + AT_rich Low_complexity Low_complexity 1 21 0 5 634 27 0 0 0 chr12 6468965 6468992 -114788538 + AT_rich Low_complexity Low_complexity 1 27 0 5 634 424 362 57 9 chr12 6468992 6469204 -114788326 - ID_B1 SINE B4 -1 223 2 5 634 232 346 98 56 chr12 6470399 6470613 -114786917 + MIR SINE MIR 19 241 -21 5 634 624 185 130 10 chr12 6470811 6471018 -114786512 + L1MA6 LINE L1 5254 5485 -806 5 634 891 306 138 36 chr12 6471019 6471720 -114785810 + Lx8 LINE L1 6445 7220 -253 5 634 289 0 24 24 chr12 6471720 6471762 -114785768 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 634 1060 56 0 47 chr12 6471762 6471912 -114785618 - B1_Mus1 SINE Alu -3 145 3 5 634 765 314 47 50 chr12 6471912 6471968 -114785562 + Lx8 LINE L1 7221 7273 -200 5 634 346 284 82 8 chr12 6472031 6472241 -114785289 + L1MA6 LINE L1 5657 5891 -409 5 634 232 264 32 32 chr12 6472334 6472428 -114785102 + L1MA6 LINE L1 6032 6125 -166 5 634 369 0 0 0 chr12 6472851 6472892 -114784638 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 634 325 256 7 104 chr12 6472895 6472912 -114784618 - MT2B LTR ERVL -312 289 168 5 634 530 229 42 0 chr12 6472912 6473030 -114784500 - B1F2 SINE Alu -23 126 4 5 634 1807 167 47 6 chr12 6473094 6473437 -114784093 - RLTR15 LTR ERVK -2 357 1 5 634 204 125 0 0 chr12 6475391 6475423 -114782107 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 634 483 18 0 0 chr12 6476500 6476556 -114780974 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 634 1135 150 16 1 chr12 6476556 6476747 -114780783 - RMER19A LTR ERVK -20 882 554 5 634 232 125 0 40 chr12 6476917 6476967 -114780563 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 5 634 221 130 0 53 chr12 6477707 6477764 -114779766 + T-rich Low_complexity Low_complexity 1 54 0 5 634 201 94 0 0 chr12 6477836 6477868 -114779662 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 5 634 297 361 50 27 chr12 6478006 6478265 -114779265 + Tigger15a DNA TcMar 332 596 -119 5 634 294 73 0 0 chr12 6479047 6479088 -114778442 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 634 3621 96 28 22 chr12 6479195 6479741 -114777789 - Lx3_Mus LINE L1 -8 7001 6453 5 634 23 0 0 0 chr12 6480254 6480277 -114777253 + AT_rich Low_complexity Low_complexity 1 23 0 5 634 3742 107 79 2 chr12 6480699 6481282 -114776248 - L1_Mus4 LINE L1 -1 6635 6008 5 634 6378 165 34 14 chr12 6481283 6481362 -114776168 + L1_Mus4 LINE L1 4652 4731 -1152 5 634 233 29 29 0 chr12 6481362 6481396 -114776134 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 634 6378 131 45 14 chr12 6481396 6482638 -114774892 + L1_Mus4 LINE L1 4732 5996 -640 5 634 392 282 51 34 chr12 6482638 6482674 -114774856 + CYRA11_Mm Unknown Y-chromosome 133 171 -446 5 634 750 162 42 0 chr12 6482674 6482816 -114774714 - URR1B DNA MER1_type 0 225 78 5 634 8932 50 10 5 chr12 6482816 6484628 -114772902 - L1Md_F2 LINE L1 -3 6579 4759 5 634 473 198 62 0 chr12 6484628 6484724 -114772806 - URR1B DNA MER1_type -123 102 1 5 634 21 0 0 0 chr12 6484736 6484757 -114772773 + AT_rich Low_complexity Low_complexity 1 21 0 6 634 458 347 70 25 chr12 6485263 6485464 -114772066 - ID_B1 SINE B4 -9 215 6 6 634 550 378 15 26 chr12 6486620 6486889 -114770641 + B4A SINE B4 17 282 -10 6 634 231 61 0 0 chr12 6487057 6487090 -114770440 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 6 634 2077 60 19 0 chr12 6487281 6487550 -114769980 + L1_Mus1 LINE L1 6294 6567 0 6 634 571 328 16 5 chr12 6488162 6488352 -114769178 - MER58A DNA MER1_type -16 208 17 6 634 6793 100 10 2 chr12 6488558 6489531 -114767999 - L1_Mus3 LINE L1 -3 6635 5684 6 634 240 226 9 73 chr12 6489667 6489777 -114767753 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 6 634 758 329 53 28 chr12 6489799 6490233 -114767297 - Lx9 LINE L1 -126 7518 7074 6 634 325 349 46 0 chr12 6490248 6490400 -114767130 - RSINE1 SINE B4 -3 162 4 6 634 4194 64 12 23 chr12 6491808 6492380 -114765150 - L1_Mus2 LINE L1 0 6566 6001 6 634 1047 36 80 0 chr12 6492380 6492517 -114765013 + L1_Mus2 LINE L1 5876 6023 -543 6 634 32 26 0 0 chr12 6492907 6492946 -114764584 + AT_rich Low_complexity Low_complexity 1 39 0 6 634 995 92 21 0 chr12 6493015 6493156 -114764374 + B1_Mus1 SINE Alu 5 148 0 6 634 265 232 54 0 chr12 6493701 6493813 -114763717 + (TA)n Simple_repeat Simple_repeat 1 118 0 6 634 378 61 0 0 chr12 6494029 6494078 -114763452 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 634 25 0 0 0 chr12 6494140 6494165 -114763365 + AT_rich Low_complexity Low_complexity 1 25 0 6 634 320 362 24 30 chr12 6494176 6494341 -114763189 - RSINE1 SINE B4 0 165 2 6 634 182 286 18 18 chr12 6494446 6494503 -114763027 + MIRm SINE MIR 219 275 -1 6 634 512 310 7 40 chr12 6495313 6495461 -114762069 + RSINE1 SINE B4 4 146 -19 6 634 203 196 18 0 chr12 6495769 6495825 -114761705 + T-rich Low_complexity Low_complexity 1 57 0 6 634 13258 212 49 24 chr12 6495846 6500000 -114757530 - Lx5 LINE L1 -35 7023 2813 6 634 5620 204 40 16 chr12 6500001 6501589 -114755941 - L1_Mur3 LINE L1 -3075 2802 1189 1 634 258 32 0 0 chr12 6501589 6501620 -114755910 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2 634 1201 246 13 50 chr12 6501620 6501923 -114755607 - L1_Mur3 LINE L1 -6540 1188 888 1 634 426 69 0 0 chr12 6502521 6502579 -114754951 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 634 32 0 0 0 chr12 6502841 6502873 -114754657 + AT_rich Low_complexity Low_complexity 1 32 0 4 634 323 359 139 24 chr12 6503254 6503585 -114753945 - L2a LINE L2 0 3426 3058 5 634 468 176 94 52 chr12 6504013 6504205 -114753325 + RMER17C LTR ERVK 78 277 -133 6 634 384 178 0 0 chr12 6504205 6504278 -114753252 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 634 23 0 0 0 chr12 6504284 6504307 -114753223 + AT_rich Low_complexity Low_complexity 1 23 0 8 634 24 32 0 0 chr12 6504571 6504602 -114752928 + AT_rich Low_complexity Low_complexity 1 31 0 9 634 803 257 194 12 chr12 6506061 6506380 -114751150 - MTEb LTR MaLR 0 379 3 1 634 21 0 0 0 chr12 6506545 6506566 -114750964 + AT_rich Low_complexity Low_complexity 1 21 0 1 634 197 318 91 0 chr12 6506692 6506802 -114750728 - MIR SINE MIR -77 185 66 1 634 351 302 74 65 chr12 6507020 6507236 -114750294 - HAL1 LINE L1 -845 1662 1445 1 634 317 376 51 20 chr12 6507361 6507654 -114749876 - L2a LINE L2 -5 3421 3120 1 634 3285 38 10 0 chr12 6508037 6508429 -114749101 - MTA_Mm LTR MaLR 0 396 1 1 634 1058 138 21 26 chr12 6508606 6508800 -114748730 + B2_Mm2 SINE B2 1 193 -2 1 634 465 376 57 17 chr12 6508855 6508876 -114748654 - MER44D DNA MER2_type -465 240 223 1 634 384 22 0 0 chr12 6508876 6508921 -114748609 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 634 465 376 57 17 chr12 6508921 6509129 -114748401 - MER44D DNA MER2_type -483 222 2 1 634 1794 266 16 5 chr12 6511864 6512299 -114745231 - Lx5 LINE L1 0 7050 6611 1 634 203 162 0 0 chr12 6512802 6512839 -114744691 + (ACTG)n Simple_repeat Simple_repeat 2 38 0 2 634 883 107 27 0 chr12 6513151 6513300 -114744230 + (TCTCC)n Simple_repeat Simple_repeat 4 156 0 2 634 336 321 63 69 chr12 6515753 6515927 -114741603 - L2c LINE L2 -7 3380 3208 2 634 207 302 151 20 chr12 6516504 6516656 -114740874 - MIR SINE MIR -33 229 58 2 634 195 69 0 0 chr12 6516806 6516835 -114740695 + (A)n Simple_repeat Simple_repeat 1 29 0 2 634 813 267 138 36 chr12 6516874 6517222 -114740308 - MTD LTR MaLR -5 374 7 2 634 369 360 78 62 chr12 6518258 6518616 -114738914 - L2a LINE L2 -1 3425 3062 2 634 19127 62 1 5 chr12 6519774 6523279 -114734251 + L1Md_Gf LINE L1 252 3840 -2046 2 634 2088 122 41 41 chr12 6523279 6523646 -114733884 + IAPLTR1_Mm LTR ERVK 1 367 0 2 634 54550 14 7 7 chr12 6523646 6530118 -114727412 + IAPEz-int LTR ERVK 8 6481 0 2 634 2088 122 41 41 chr12 6530118 6530485 -114727045 + IAPLTR1_Mm LTR ERVK 1 367 0 2 634 14302 22 0 1 chr12 6530486 6532242 -114725288 + L1Md_T LINE L1 3833 5586 -297 2 634 8477 33 0 0 chr12 6532242 6533238 -114724292 + L1Md_T LINE L1 5587 6582 0 2 634 1568 203 93 14 chr12 6533240 6533469 -114724061 + ORR1C2 LTR MaLR 13 271 -113 3 634 3684 55 4 11 chr12 6533469 6533945 -114723585 + L1Md_F2 LINE L1 6110 6582 0 3 634 1568 203 93 14 chr12 6533945 6534060 -114723470 + ORR1C2 LTR MaLR 272 384 0 3 634 272 184 184 0 chr12 6534181 6534295 -114723235 + L1MA8 LINE L1 6100 6234 -57 3 634 20762 104 15 5 chr12 6534739 6537527 -114720003 - L1_Mus2 LINE L1 0 6566 2938 3 634 938 133 7 0 chr12 6537527 6537670 -114719860 - B1_Mus1 SINE Alu 0 148 5 3 634 20762 95 11 4 chr12 6537670 6540365 -114717165 - L1_Mus2 LINE L1 -2946 2937 229 3 634 330 323 81 47 chr12 6540884 6541095 -114716435 - RMER15 LTR ERVL -58 517 300 3 634 375 224 122 18 chr12 6541448 6541612 -114715918 - L1MA7 LINE L1 -36 6255 6075 3 634 271 388 52 0 chr12 6541783 6541917 -114715613 - B1F SINE Alu -1 148 8 3 634 324 0 0 0 chr12 6542551 6542587 -114714943 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 634 297 155 0 0 chr12 6542587 6542645 -114714885 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 634 243 79 0 0 chr12 6542660 6542698 -114714832 + (TATG)n Simple_repeat Simple_repeat 3 40 0 4 634 308 277 0 122 chr12 6543429 6543544 -114713986 - B1F SINE Alu -44 105 5 4 634 694 162 6 24 chr12 6544994 6545040 -114712490 + polypyrimidine Low_complexity Low_complexity 118 163 0 4 634 1536 22 0 0 chr12 6545040 6545220 -114712310 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 634 694 162 6 24 chr12 6545220 6545337 -114712193 + polypyrimidine Low_complexity Low_complexity 3 117 0 4 634 441 351 43 86 chr12 6545688 6546015 -114711515 - ORR1E LTR MaLR 0 359 47 4 634 795 21 0 0 chr12 6546016 6546109 -114711421 + (GAA)n Simple_repeat Simple_repeat 3 95 0 4 634 208 340 83 39 chr12 6547930 6548086 -114709444 - L2a LINE L2 -4 3422 3260 4 634 187 284 157 41 chr12 6548100 6548221 -114709309 + MIRb SINE MIR 52 186 -82 4 634 192 40 0 0 chr12 6548234 6548259 -114709271 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 634 1078 86 0 0 chr12 6548302 6548441 -114709089 + B1_Mus1 SINE Alu 2 140 -8 5 634 240 35 0 0 chr12 6548441 6548470 -114709060 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 634 285 258 0 0 chr12 6548557 6548650 -114708880 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 634 28 0 0 0 chr12 6548701 6548729 -114708801 + AT_rich Low_complexity Low_complexity 1 28 0 5 634 513 279 132 129 chr12 6549931 6550273 -114707257 - MTE2a LTR MaLR -28 351 9 5 634 254 329 0 23 chr12 6551998 6552085 -114705445 + MER5A1 DNA MER1_type 51 135 -31 5 634 655 276 43 58 chr12 6552109 6552386 -114705144 - RLTR12B LTR ERVK -12 516 244 5 634 766 273 8 71 chr12 6552382 6552650 -114704880 - RLTR12B LTR ERVK -231 297 47 5 634 31 26 0 0 chr12 6553057 6553095 -114704435 + AT_rich Low_complexity Low_complexity 1 38 0 5 79 656 305 70 67 chr12 6553365 6553738 -114703792 - Charlie24 DNA MER1_type -384 2066 1693 5 635 5944 116 5 6 chr12 6553739 6555379 -114702151 + L1VL4 LINE L1 221 1859 -1700 6 635 28708 92 9 24 chr12 6555380 6560650 -114696880 + L1Md_F2 LINE L1 392 5585 -298 6 635 7632 72 3 8 chr12 6560651 6561651 -114695879 + L1Md_F2 LINE L1 5587 6581 -1 6 635 494 279 110 28 chr12 6561668 6561922 -114695608 + L1MD LINE L1 3028 3302 -2844 6 635 273 274 14 0 chr12 6561924 6561997 -114695533 + B3 SINE B2 1 74 -142 6 635 1016 111 63 42 chr12 6562069 6562258 -114695272 + B2_Mm2 SINE B2 1 193 -2 6 635 17875 171 20 4 chr12 6562283 6564673 -114692857 + Lx LINE L1 2252 4670 -1216 6 635 2586 48 3 0 chr12 6564673 6564989 -114692541 - L1_Mus1 LINE L1 0 6567 6251 6 635 17875 144 12 3 chr12 6564989 6566938 -114690592 + Lx LINE L1 4671 6648 -6 6 635 281 187 13 0 chr12 6567083 6567158 -114690372 + GA-rich Low_complexity Low_complexity 4 79 0 6 635 272 342 61 127 chr12 6567193 6567602 -114689928 - Charlie24 DNA MER1_type -776 1674 1293 5 635 3434 66 0 13 chr12 6567623 6567742 -114689788 - L1_Mus2 LINE L1 -448 6118 6005 6 635 3261 29 37 0 chr12 6567742 6568124 -114689406 - MTA_Mm LTR MaLR 0 396 1 6 635 3434 66 0 13 chr12 6568124 6568477 -114689053 - L1_Mus2 LINE L1 -562 6004 5652 6 635 2811 75 0 51 chr12 6568477 6568871 -114688659 + L1_Mus2 LINE L1 6191 6564 -2 6 635 292 64 12 82 chr12 6569066 6569151 -114688379 + T-rich Low_complexity Low_complexity 4 82 0 7 635 1120 84 0 0 chr12 6569158 6569300 -114688230 - B1_Mm SINE Alu -5 142 1 7 635 333 0 0 0 chr12 6569330 6569367 -114688163 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 7 635 420 375 121 18 chr12 6570407 6570679 -114686851 - Helitron3Na_Mam RC Helitron -132 354 55 7 635 1902 144 42 179 chr12 6570694 6571074 -114686456 - RLTR23 LTR ERV1 0 430 114 7 635 303 0 0 60 chr12 6571074 6571124 -114686406 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 635 1902 144 42 179 chr12 6571124 6571241 -114686289 - RLTR23 LTR ERV1 -317 113 1 7 635 1031 112 0 6 chr12 6572550 6572712 -114684818 + (TTTC)n Simple_repeat Simple_repeat 2 162 0 7 635 489 246 42 8 chr12 6572945 6573064 -114684466 - B3 SINE B2 -1 215 93 7 635 222 262 14 71 chr12 6573058 6573128 -114684402 - B2_Mm2 SINE B2 -129 66 1 7 635 21 36 0 0 chr12 6573191 6573219 -114684311 + AT_rich Low_complexity Low_complexity 1 28 0 7 635 2354 120 130 28 chr12 6574451 6574888 -114682642 - RLTR45 LTR ERVK 0 482 1 8 635 7450 94 1 2 chr12 6574888 6576034 -114681496 - RLTR45-int LTR ERVK -456 7761 6331 8 635 186 371 0 10 chr12 6576180 6576278 -114681252 - L4 LINE RTE -1375 654 558 8 635 2554 41 0 0 chr12 6576371 6576686 -114680844 - RLTR45-int LTR ERVK -5596 1648 1334 8 635 294 306 55 50 chr12 6576930 6577150 -114680380 - SRV_MM-int LTR ERVK -3623 2544 2324 8 635 722 143 0 0 chr12 6577543 6577662 -114679868 - RLTR45-int LTR ERVK -6213 1031 913 8 635 1628 62 27 0 chr12 6577784 6578008 -114679522 - RLTR45-int LTR ERVK -6334 910 681 8 635 1075 8 0 0 chr12 6578353 6578477 -114679053 - RLTR45-int LTR ERVK -6552 692 569 8 635 3587 94 47 20 chr12 6579156 6579459 -114678071 - RLTR45-int LTR ERVK -6673 571 280 8 635 186 43 0 0 chr12 6579459 6579482 -114678048 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 635 3587 94 47 20 chr12 6579482 6579734 -114677796 - RLTR45-int LTR ERVK -6965 279 2 8 635 2353 116 141 28 chr12 6579734 6580167 -114677363 - RLTR45 LTR ERVK 0 482 1 8 635 2667 129 33 45 chr12 6581951 6582439 -114675091 - RLTR45 LTR ERVK 0 482 1 8 635 455 359 0 30 chr12 6582461 6582625 -114674905 + RSINE1 SINE B4 2 160 -5 8 635 21 0 0 0 chr12 6582835 6582856 -114674674 + AT_rich Low_complexity Low_complexity 1 21 0 8 635 33 85 0 0 chr12 6582890 6582972 -114674558 + AT_rich Low_complexity Low_complexity 1 82 0 8 635 346 280 0 0 chr12 6583133 6583201 -114674329 + B3A SINE B2 5 72 -126 8 635 198 0 0 0 chr12 6583201 6583223 -114674307 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 635 1061 58 65 0 chr12 6584607 6584745 -114672785 - B1_Mm SINE Alu 0 147 1 9 635 621 272 0 8 chr12 6585661 6585787 -114671743 + B1_Mur2 SINE Alu 12 136 -13 9 635 405 0 0 0 chr12 6585790 6585835 -114671695 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 635 1330 122 73 188 chr12 6585875 6586338 -114671192 + RMER17C LTR ERVK 1 410 0 9 635 382 319 29 29 chr12 6587234 6587373 -114670157 + MIR SINE MIR 3 141 -121 9 635 825 349 64 22 chr12 6587381 6587770 -114669760 - LTR33 LTR ERVL -20 495 75 9 635 439 316 36 92 chr12 6588742 6588937 -114668593 + B3A SINE B2 1 184 -11 9 635 2628 82 47 10 chr12 6590309 6590693 -114666837 + MTB LTR MaLR 1 398 -2 9 635 22 56 0 0 chr12 6590792 6590828 -114666702 + AT_rich Low_complexity Low_complexity 1 36 0 9 635 268 383 118 30 chr12 6591433 6592036 -114665494 + L2 LINE L2 1935 2590 -829 1 635 1121 47 0 7 chr12 6592890 6593040 -114664490 + L1_Mus2 LINE L1 6418 6566 0 1 635 207 0 0 0 chr12 6594833 6594856 -114662674 + (A)n Simple_repeat Simple_repeat 1 23 0 1 635 239 222 48 0 chr12 6596295 6596358 -114661172 + CT-rich Low_complexity Low_complexity 2 67 0 1 635 353 262 8 0 chr12 6596542 6596668 -114660862 + (TG)n Simple_repeat Simple_repeat 2 128 0 1 635 365 327 24 73 chr12 6598267 6598432 -114659098 + B4 SINE B4 58 214 -78 1 635 180 0 0 0 chr12 6598666 6598686 -114658844 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 635 1878 204 43 22 chr12 6599049 6599465 -114658065 + RLTR31A_Mm LTR ERVK 29 453 -131 1 635 192 77 0 0 chr12 6599513 6599539 -114657991 + (T)n Simple_repeat Simple_repeat 1 26 0 1 635 21 82 0 0 chr12 6601835 6601884 -114655646 + AT_rich Low_complexity Low_complexity 1 49 0 1 635 2732 99 7 17 chr12 6602308 6602721 -114654809 + RLTR9E LTR ERVK 1 409 0 1 635 477 34 0 0 chr12 6602955 6603014 -114654516 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 635 4229 91 29 1 chr12 6603061 6603720 -114653810 - L1_Mur1 LINE L1 -1359 4527 3851 1 635 375 83 67 0 chr12 6603710 6603770 -114653760 - L1_Mur1 LINE L1 -1543 4343 4280 1 635 8491 103 10 34 chr12 6603769 6605472 -114652058 + Lx3A LINE L1 5322 6971 -10 1 635 257 254 0 14 chr12 6605536 6605608 -114651922 - L1M2 LINE L1 -632 5659 5589 1 635 723 219 64 18 chr12 6605670 6605952 -114651578 + Lx7 LINE L1 5671 6006 -1690 1 635 378 0 0 0 chr12 6605952 6605994 -114651536 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 635 619 260 109 45 chr12 6605994 6606135 -114651395 + Lx7 LINE L1 6007 6154 -1542 1 635 1642 205 18 1 chr12 6606136 6606497 -114651033 - Lx4B LINE L1 -359 6641 6252 1 635 361 131 16 0 chr12 6606496 6606557 -114650973 + Lx3C LINE L1 5866 5927 -1049 1 635 315 0 0 0 chr12 6606717 6606752 -114650778 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 635 297 82 20 20 chr12 6606806 6606856 -114650674 + Lx4B LINE L1 6191 6240 -818 1 635 503 241 7 0 chr12 6607861 6608002 -114649528 + (TA)n Simple_repeat Simple_repeat 2 143 0 1 635 260 362 0 0 chr12 6608453 6608547 -114648983 - MLT1A LTR MaLR 0 374 281 1 635 254 326 22 0 chr12 6608619 6608711 -114648819 + CT-rich Low_complexity Low_complexity 1 94 0 1 635 2988 83 5 5 chr12 6608767 6609165 -114648365 - MTB LTR MaLR 0 400 3 1 635 243 0 0 0 chr12 6609320 6609347 -114648183 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 635 561 52 0 0 chr12 6609347 6609423 -114648107 + (GA)n Simple_repeat Simple_repeat 1 77 0 1 635 362 96 0 0 chr12 6609423 6609475 -114648055 - L1_Mm LINE L1 -464 5419 5368 1 635 1636 147 13 0 chr12 6609475 6609775 -114647755 + L1_Mur1 LINE L1 3567 3870 -2016 1 635 252 371 19 19 chr12 6610218 6610372 -114647158 - MLT1A LTR MaLR -381 168 15 1 635 342 0 0 0 chr12 6612633 6612671 -114644859 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 635 194 150 0 24 chr12 6612946 6612987 -114644543 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 635 38428 15 0 10 chr12 6613292 6619463 -114638067 - L1Md_A LINE L1 0 6582 480 1 635 454 356 88 70 chr12 6621503 6621787 -114635743 - B4 SINE B4 -1 291 3 1 635 185 256 0 0 chr12 6622305 6622348 -114635182 + L2a LINE L2 3380 3422 -4 1 635 187 377 28 0 chr12 6622431 6622537 -114634993 + L3 LINE CR1 2082 2190 -2299 1 635 21 57 0 0 chr12 6622682 6622717 -114634813 + AT_rich Low_complexity Low_complexity 1 35 0 1 635 207 0 0 0 chr12 6622742 6622765 -114634765 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 635 481 314 60 9 chr12 6623364 6623579 -114633951 + Tigger5 DNA MER2_type 17 242 -2164 1 635 308 267 48 38 chr12 6623575 6623680 -114633850 + Tigger5 DNA MER2_type 2291 2396 -10 1 635 315 248 0 24 chr12 6623725 6623849 -114633681 + CT-rich Low_complexity Low_complexity 1 121 0 1 635 885 167 0 0 chr12 6625059 6625233 -114632297 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 635 730 253 90 21 chr12 6625233 6625467 -114632063 - MER90a LTR ERV1 -364 250 1 1 635 465 303 88 65 chr12 6625493 6625754 -114631776 - HAL1 LINE L1 -1264 1243 977 1 635 198 284 48 36 chr12 6626537 6626621 -114630909 + MIRb SINE MIR 84 168 -100 1 635 246 176 0 0 chr12 6626687 6626738 -114630792 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 635 454 404 46 18 chr12 6626740 6627022 -114630508 - B4A SINE B4 -1 291 2 1 635 1871 91 42 0 chr12 6627056 6627319 -114630211 - L1_Mus2 LINE L1 0 6566 6293 1 635 219 176 0 19 chr12 6627486 6627538 -114629992 + T-rich Low_complexity Low_complexity 3 53 0 1 635 289 193 39 78 chr12 6627540 6627669 -114629861 - Lx9 LINE L1 0 7644 7521 1 635 1997 89 10 17 chr12 6627678 6627974 -114629556 + L1_Mus3 LINE L1 6345 6638 0 1 635 405 0 0 0 chr12 6628184 6628229 -114629301 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 1 635 430 326 79 0 chr12 6629601 6629779 -114627751 - MIRb SINE MIR -40 228 37 1 635 591 334 69 40 chr12 6629859 6630205 -114627325 - MLT1A0 LTR MaLR 0 365 10 1 635 284 331 40 99 chr12 6631152 6631303 -114626227 + B4A SINE B4 2 143 -149 1 635 386 229 125 57 chr12 6631269 6631533 -114625997 - RMER17D2 LTR ERVK -209 600 319 1 635 311 157 0 14 chr12 6631676 6631747 -114625783 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 635 30 69 0 0 chr12 6632939 6632997 -114624533 + AT_rich Low_complexity Low_complexity 1 58 0 1 635 675 0 0 0 chr12 6633070 6633145 -114624385 + (TTTCC)n Simple_repeat Simple_repeat 1 75 0 1 635 1202 62 6 17 chr12 6633147 6633327 -114624203 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 1 635 462 18 0 0 chr12 6633329 6633384 -114624146 + (TTTTC)n Simple_repeat Simple_repeat 3 57 0 1 635 252 314 19 19 chr12 6633392 6633496 -114624034 - Lx8 LINE L1 -130 7343 7240 1 635 915 126 0 0 chr12 6633665 6633894 -114623636 - L1_Mus4 LINE L1 0 6636 6478 1 635 467 250 14 62 chr12 6633897 6634042 -114623488 - Lx8 LINE L1 -356 7117 6980 1 635 29118 124 22 17 chr12 6634402 6636018 -114621512 + L1Md_F2 LINE L1 333 1967 -3916 1 635 216 0 0 0 chr12 6636018 6636042 -114621488 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 635 29118 88 9 5 chr12 6636042 6639656 -114617874 + L1Md_F2 LINE L1 1968 5584 -299 1 635 7092 81 9 18 chr12 6639657 6639924 -114617606 + L1Md_F2 LINE L1 5587 5857 -725 1 635 3369 30 5 0 chr12 6639924 6640318 -114617212 + MTA_Mm LTR MaLR 1 396 0 1 635 9475 26 0 0 chr12 6640318 6641416 -114616114 + MTA_Mm-int LTR MaLR 1 1098 0 1 635 3492 18 2 0 chr12 6641418 6641811 -114615719 + MTA_Mm LTR MaLR 3 396 0 1 635 7092 81 9 18 chr12 6641811 6642534 -114614996 + L1Md_F2 LINE L1 5858 6571 -11 1 635 2935 76 5 2 chr12 6642881 6643275 -114614255 - L1_Mus1 LINE L1 -2 6565 6171 1 635 211 292 15 15 chr12 6643679 6643745 -114613785 - MIRb SINE MIR -1 267 202 1 635 260 254 0 31 chr12 6643928 6643993 -114613537 - MER21B LTR ERV1 -44 819 757 1 635 189 289 0 0 chr12 6644249 6644294 -114613236 - MIRb SINE MIR 0 268 224 1 635 30 0 0 0 chr12 6644447 6644477 -114613053 + AT_rich Low_complexity Low_complexity 1 30 0 1 635 336 64 0 0 chr12 6644535 6644582 -114612948 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 635 225 0 0 0 chr12 6645377 6645402 -114612128 + (T)n Simple_repeat Simple_repeat 1 25 0 1 635 215 303 87 51 chr12 6646673 6646806 -114610724 + MIRb SINE MIR 32 169 -107 1 635 194 359 0 0 chr12 6646821 6646885 -114610645 - MIR SINE MIR -140 122 59 1 635 17696 89 5 5 chr12 6647323 6650610 -114606920 - L1Md_F2 LINE L1 -10 6572 3287 1 635 29372 87 10 9 chr12 6650651 6655660 -114601870 + L1Md_F2 LINE L1 590 5585 -298 1 635 7509 74 10 0 chr12 6655661 6656636 -114600894 + L1Md_F2 LINE L1 5587 6571 -11 1 635 813 113 0 0 chr12 6656638 6656771 -114600759 - L1Md_F2 LINE L1 -5573 1043 911 1 635 1404 158 69 11 chr12 6656770 6657045 -114600485 - L1VL1 LINE L1 -6131 291 1 1 635 254 320 53 46 chr12 6657048 6657179 -114600351 - L2b LINE L2 -11 3364 3233 1 635 189 0 0 0 chr12 6657643 6657664 -114599866 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 635 2360 86 441 0 chr12 6657666 6658153 -114599377 + L1Md_F2 LINE L1 4886 5587 -296 1 635 7365 82 0 8 chr12 6658154 6659144 -114598386 + L1Md_F2 LINE L1 5589 6570 -12 1 635 53 49 0 0 chr12 6659181 6659262 -114598268 + AT_rich Low_complexity Low_complexity 1 81 0 1 635 1080 248 127 0 chr12 6659383 6659714 -114597816 - Lx9 LINE L1 -176 7468 7096 1 635 1397 244 116 3 chr12 6659753 6660114 -114597416 + MTD LTR MaLR 18 419 0 1 635 2391 279 17 6 chr12 6660119 6660821 -114596709 - Lx9 LINE L1 -615 7029 6320 1 635 797 310 77 64 chr12 6661371 6661739 -114595791 - ORR1E LTR MaLR 0 370 4 1 635 195 129 0 0 chr12 6662016 6662047 -114595483 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 1 635 258 143 0 0 chr12 6662091 6662140 -114595390 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 635 1781 210 88 29 chr12 6663471 6663879 -114593651 + RLTR11A LTR ERVK 1 432 -96 1 635 421 279 38 6 chr12 6664136 6664295 -114593235 + CT-rich Low_complexity Low_complexity 3 166 0 1 635 242 217 137 55 chr12 6664388 6664461 -114593069 - B3 SINE B2 -135 81 3 1 635 450 343 60 6 chr12 6664464 6664646 -114592884 - ID_B1 SINE B4 0 224 33 1 635 2966 58 41 0 chr12 6664643 6665036 -114592494 - MTA_Mm-int LTR MaLR -689 409 1 1 635 3298 48 2 0 chr12 6665036 6665431 -114592099 - MTA_Mm LTR MaLR 0 396 1 1 635 236 347 28 5 chr12 6665649 6665866 -114591664 + L1MD LINE L1 5022 5243 -903 1 635 3183 36 10 8 chr12 6665908 6666303 -114591227 + MTA_Mm LTR MaLR 1 396 0 1 635 27952 125 18 38 chr12 6666325 6672708 -114584822 + L1_Mus1 LINE L1 273 6567 0 1 635 40441 14 1 6 chr12 6673429 6679629 -114577901 - L1Md_A LINE L1 -2 6580 416 1 635 244 0 56 0 chr12 6679767 6679803 -114577727 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 635 396 0 0 0 chr12 6679997 6680041 -114577489 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 635 1568 238 10 26 chr12 6680117 6680506 -114577024 - ORR1D1 LTR MaLR 0 374 9 1 635 505 340 64 64 chr12 6681119 6681635 -114575895 + Lx8 LINE L1 6870 7525 -119 1 635 248 264 44 30 chr12 6682139 6682342 -114575188 + L1M5 LINE L1 3275 3480 -2666 1 79 30508 84 11 2 chr12 6682353 6687531 -114569999 + L1Md_F2 LINE L1 360 5585 -298 1 636 7263 84 3 5 chr12 6687532 6688528 -114569002 + L1Md_F2 LINE L1 5587 6580 -2 1 636 2604 239 43 22 chr12 6688955 6689776 -114567754 - RMER1B Other Other -1 1065 48 2 636 817 249 70 10 chr12 6689789 6689847 -114567683 - B3 SINE B2 0 216 149 2 636 414 0 0 0 chr12 6689847 6689893 -114567637 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 636 817 249 70 10 chr12 6689893 6690033 -114567497 - B3 SINE B2 -68 148 6 2 636 720 103 0 0 chr12 6690176 6690292 -114567238 + (TC)n Simple_repeat Simple_repeat 2 117 0 2 636 33 66 0 0 chr12 6690477 6690538 -114566992 + AT_rich Low_complexity Low_complexity 1 61 0 2 636 219 69 0 0 chr12 6690982 6691011 -114566519 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 636 457 320 24 16 chr12 6691908 6692032 -114565498 + RSINE1 SINE B4 3 127 -38 2 636 261 0 0 0 chr12 6692094 6692123 -114565407 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 2 636 333 0 0 0 chr12 6692126 6692163 -114565367 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 636 327 303 134 27 chr12 6692446 6692670 -114564860 - L1MD LINE L1 -2977 3169 2922 2 636 330 320 26 42 chr12 6692937 6693126 -114564404 - L1MD LINE L1 -3755 2391 2206 2 636 213 154 0 0 chr12 6693523 6693562 -114563968 + GA-rich Low_complexity Low_complexity 2 40 0 2 636 1074 140 0 0 chr12 6693563 6693742 -114563788 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 636 579 66 0 0 chr12 6693756 6693832 -114563698 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 636 471 311 64 47 chr12 6694052 6694224 -114563306 - MLT1D LTR MaLR -2 503 329 2 636 3395 41 0 2 chr12 6694304 6694724 -114562806 - L1Md_F2 LINE L1 -1 6581 6163 2 636 229 279 38 0 chr12 6695478 6695557 -114561973 - Lx5 LINE L1 -1175 5875 5794 2 636 384 22 0 0 chr12 6695566 6695611 -114561919 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 636 300 310 62 17 chr12 6696077 6696246 -114561284 + MIR SINE MIR 64 242 -26 2 636 316 319 0 25 chr12 6696486 6696605 -114560925 + GA-rich Low_complexity Low_complexity 2 117 0 2 636 330 266 97 9 chr12 6696605 6696719 -114560811 + HAL1-3A_ME LINE L1 2285 2408 -450 2 636 1769 206 112 25 chr12 6696977 6697473 -114560057 + RLTR20C LTR ERVK 5 521 -13 2 636 367 308 55 51 chr12 6697427 6697506 -114560024 - CYRA11_Mm Unknown Y-chromosome -224 393 213 2 636 766 181 21 0 chr12 6697506 6697650 -114559880 + URR1A DNA MER1_type 80 226 0 2 636 367 308 55 51 chr12 6697650 6697680 -114559850 - CYRA11_Mm Unknown Y-chromosome -224 212 140 2 636 2026 246 33 14 chr12 6697837 6698320 -114559210 - Lx5 LINE L1 -3 7047 6556 2 636 1182 63 0 28 chr12 6700369 6700549 -114556981 - L1Md_F3 LINE L1 0 6584 6410 2 636 4719 101 16 3 chr12 6700887 6701554 -114555976 + L1_Mus4 LINE L1 5949 6624 -12 2 636 1281 80 0 0 chr12 6701554 6701729 -114555801 + (GAGAA)n Simple_repeat Simple_repeat 4 178 0 2 636 1947 314 115 17 chr12 6702273 6703094 -114554436 + Lx8 LINE L1 6363 7244 -229 2 636 2827 77 15 5 chr12 6703094 6703486 -114554044 - MTA_Mm LTR MaLR 0 396 1 2 636 1947 314 115 17 chr12 6703486 6703542 -114553988 + Lx8 LINE L1 7245 7328 -145 2 636 279 0 0 0 chr12 6703542 6703573 -114553957 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 636 708 12 0 0 chr12 6703573 6703653 -114553877 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 636 1947 314 115 17 chr12 6703653 6703781 -114553749 + Lx8 LINE L1 7329 7468 -5 2 636 971 152 0 0 chr12 6705335 6705480 -114552050 - B1_Mus1 SINE Alu -2 146 2 2 636 1024 98 18 0 chr12 6705854 6706017 -114551513 + (TTCC)n Simple_repeat Simple_repeat 4 169 0 2 636 207 139 0 0 chr12 6706017 6706053 -114551477 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 2 636 579 248 141 16 chr12 6706405 6706647 -114550883 + RLTR10A LTR ERVK 140 411 0 2 636 417 186 56 56 chr12 6706663 6706771 -114550759 + RLTR10-int LTR ERVK 319 426 -1561 2 636 355 261 47 47 chr12 6707867 6708016 -114549514 + IAP-d-int LTR ERVK 2241 2389 -4153 2 636 2300 289 47 42 chr12 6708067 6710550 -114546980 + IAP-d-int LTR ERVK 1002 5080 -1462 2 636 573 239 159 21 chr12 6710591 6710830 -114546700 + RLTR10A LTR ERVK 140 411 0 2 636 567 85 0 0 chr12 6711063 6711145 -114546385 + (TATG)n Simple_repeat Simple_repeat 3 84 0 2 636 8602 94 10 2 chr12 6711214 6713159 -114544371 - L1_Mus2 LINE L1 0 6566 4608 2 636 2278 126 8 26 chr12 6713158 6713542 -114543988 + L1_Mm LINE L1 3926 4302 -1581 2 636 189 147 0 0 chr12 6713671 6713705 -114543825 + (CTAAA)n Simple_repeat Simple_repeat 3 36 0 2 636 754 184 153 6 chr12 6714083 6714253 -114543277 - URR1A DNA MER1_type -29 197 3 2 636 1861 192 42 46 chr12 6716833 6717335 -114540195 - RLTR31A_Mm LTR ERVK 0 561 1 2 636 968 273 66 96 chr12 6717825 6718202 -114539328 - MTE2a LTR MaLR -13 366 1 2 636 447 19 0 0 chr12 6719063 6719115 -114538415 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 636 23 86 0 0 chr12 6720174 6720232 -114537298 + AT_rich Low_complexity Low_complexity 1 58 0 2 636 707 260 15 30 chr12 6723231 6723433 -114534097 + Ricksha_c DNA MuDR 693 891 -1157 2 636 807 233 90 28 chr12 6723677 6723889 -114533641 + URR1B DNA MER1_type 1 225 0 2 636 32 26 0 0 chr12 6724749 6724788 -114532742 + AT_rich Low_complexity Low_complexity 1 39 0 2 636 351 247 0 34 chr12 6725273 6725361 -114532169 + MTE2b LTR MaLR 18 102 -277 2 636 1135 295 3 50 chr12 6725371 6725689 -114531841 + MTE2b LTR MaLR 72 374 -5 2 636 22 0 0 0 chr12 6726721 6726743 -114530787 + AT_rich Low_complexity Low_complexity 1 22 0 2 636 327 306 46 93 chr12 6727975 6728277 -114529253 - B4A SINE B4 -4 288 1 2 636 1882 177 70 79 chr12 6729068 6729253 -114528277 - MTC LTR MaLR -4 417 228 2 636 3025 90 35 13 chr12 6729253 6729717 -114527813 - L1_Mus3 LINE L1 0 6638 6165 2 636 1882 177 70 79 chr12 6729717 6729948 -114527582 - MTC LTR MaLR -194 227 5 2 636 305 242 45 0 chr12 6730148 6730214 -114527316 + ID4_ SINE ID 15 83 0 2 636 873 310 20 24 chr12 6730298 6730546 -114526984 - ORR1E LTR MaLR -110 249 3 2 636 423 0 0 0 chr12 6731516 6731563 -114525967 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 636 1325 183 84 96 chr12 6732191 6732547 -114524983 + ORR1B1 LTR MaLR 35 386 -8 2 636 204 40 0 0 chr12 6732742 6732767 -114524763 + (TTAG)n Simple_repeat Simple_repeat 1 25 0 2 636 324 0 0 0 chr12 6732767 6732802 -114524728 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 2 636 212 213 0 21 chr12 6733244 6733292 -114524238 + GA-rich Low_complexity Low_complexity 3 49 0 2 636 279 0 0 0 chr12 6734187 6734218 -114523312 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 636 1288 42 0 18 chr12 6734917 6735087 -114522443 - L1_Mus1 LINE L1 0 6567 6401 2 636 22 0 0 0 chr12 6735261 6735283 -114522247 + AT_rich Low_complexity Low_complexity 1 22 0 2 636 417 310 103 5 chr12 6736802 6737006 -114520524 - MER58A DNA MER1_type 0 224 1 2 636 3556 279 84 36 chr12 6738740 6740611 -114516919 - Lx7 LINE L1 -388 7308 5345 2 636 4973 91 4 49 chr12 6740612 6741374 -114516156 - L1_Mus2 LINE L1 -1 6565 5838 2 636 3498 117 0 0 chr12 6741374 6741872 -114515658 + L1_Mus2 LINE L1 5332 5829 -54 2 636 1054 240 64 21 chr12 6741869 6742197 -114515333 - Lx7 LINE L1 -511 5369 5028 2 636 699 12 0 0 chr12 6742672 6742752 -114514778 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 636 342 0 0 0 chr12 6742763 6742801 -114514729 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 636 381 58 0 0 chr12 6743649 6743701 -114513829 + (CAA)n Simple_repeat Simple_repeat 2 53 0 2 636 212 286 0 60 chr12 6744344 6744411 -114513119 + MER5A DNA MER1_type 93 155 -34 2 636 269 278 10 10 chr12 6745092 6745190 -114512340 - L1MEg LINE L1 -4257 1827 1730 2 636 518 289 6 101 chr12 6745291 6745449 -114512081 + B3 SINE B2 6 148 -68 2 636 369 58 0 0 chr12 6745470 6745522 -114512008 + (T)n Simple_repeat Simple_repeat 1 52 0 2 636 551 51 13 0 chr12 6746067 6746146 -114511384 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 636 650 265 66 13 chr12 6746957 6747183 -114510347 + Lx8 LINE L1 7000 7237 -236 2 636 1016 89 0 40 chr12 6747227 6747379 -114510151 + B1_Mm SINE Alu 1 146 -1 2 636 498 238 137 39 chr12 6747849 6748002 -114509528 + RMER10A LTR ERVL 1 168 -274 2 636 2542 111 35 0 chr12 6748016 6748414 -114509116 - L1_Mus3 LINE L1 -2 6636 6225 2 636 264 304 70 93 chr12 6748422 6748636 -114508894 + Lx8 LINE L1 7254 7462 -11 2 636 32 0 0 0 chr12 6748637 6748669 -114508861 + AT_rich Low_complexity Low_complexity 1 32 0 2 636 1603 301 58 26 chr12 6748690 6749694 -114507836 + L1MD LINE L1 2389 3424 -2722 2 636 234 81 0 0 chr12 6749772 6749809 -114507721 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 636 459 295 8 43 chr12 6749857 6749974 -114507556 - B3A SINE B2 -49 149 37 2 636 694 234 20 20 chr12 6749984 6750132 -114507398 + B1_Mus1 SINE Alu 1 148 0 2 636 232 294 12 99 chr12 6750013 6750175 -114507355 - RMER17A LTR ERVK -252 499 352 2 636 592 309 115 15 chr12 6750677 6751146 -114506384 + L1M5 LINE L1 4405 4920 -1226 2 636 416 259 57 46 chr12 6751323 6751586 -114505944 + L1M5 LINE L1 5326 5593 -586 2 636 604 329 71 34 chr12 6751602 6751935 -114505595 + MLT1A0 LTR MaLR 21 365 0 2 636 479 331 36 7 chr12 6752121 6752261 -114505269 + RSINE1 SINE B4 5 148 -17 2 636 510 365 67 21 chr12 6752270 6752508 -114505022 - B4A SINE B4 0 292 44 2 636 194 282 62 37 chr12 6753003 6753084 -114504446 + L3 LINE CR1 3844 3926 -563 2 636 209 162 15 0 chr12 6754111 6754179 -114503351 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 636 652 298 130 57 chr12 6756570 6756869 -114500661 - MTE2b LTR MaLR -2 377 57 2 636 1160 158 50 23 chr12 6757157 6757377 -114500153 + URR1A DNA MER1_type 1 226 0 2 636 450 53 0 0 chr12 6758503 6758560 -114498970 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 636 269 305 0 12 chr12 6758904 6758987 -114498543 + Ricksha_c DNA MuDR 365 446 -1602 2 636 213 167 0 0 chr12 6760364 6760418 -114497112 + T-rich Low_complexity Low_complexity 1 54 0 2 636 569 293 67 20 chr12 6761071 6761266 -114496264 - B3 SINE B2 -9 207 4 2 636 2345 149 78 78 chr12 6761311 6761797 -114495733 - RLTR11A2 LTR ERVK 0 527 51 2 636 321 26 0 0 chr12 6761797 6761835 -114495695 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 636 2345 149 78 78 chr12 6761835 6761872 -114495658 - RLTR11A2 LTR ERVK -477 50 4 2 636 432 0 0 0 chr12 6761872 6761920 -114495610 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 636 3781 146 18 0 chr12 6761921 6762531 -114494999 - Lx2 LINE L1 -608 6389 5769 2 636 5822 167 28 80 chr12 6762530 6763822 -114493708 + Lx2 LINE L1 4569 5793 -90 2 636 440 331 166 39 chr12 6764138 6764493 -114493037 - MLT1D LTR MaLR 0 505 106 2 636 535 272 68 24 chr12 6764817 6765024 -114492506 + B3 SINE B2 1 216 0 3 636 25 0 0 0 chr12 6765518 6765543 -114491987 + AT_rich Low_complexity Low_complexity 1 25 0 3 636 30 59 0 0 chr12 6766102 6766153 -114491377 + AT_rich Low_complexity Low_complexity 1 51 0 3 636 261 324 0 0 chr12 6767494 6767568 -114489962 - ID2 SINE ID -8 75 2 3 636 434 283 84 56 chr12 6768315 6768600 -114488930 - Lx8 LINE L1 -30 7443 7151 3 636 2146 299 42 18 chr12 6768587 6769316 -114488214 - Lx8 LINE L1 -438 7035 6289 3 636 601 347 73 15 chr12 6769550 6769878 -114487652 + MTEb LTR MaLR 33 379 0 3 636 339 286 0 0 chr12 6769880 6770058 -114487472 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 636 874 138 19 0 chr12 6770068 6770227 -114487303 + (CATATA)n Simple_repeat Simple_repeat 3 164 0 3 636 334 214 29 0 chr12 6770244 6770347 -114487183 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 3 636 22 0 0 0 chr12 6770482 6770504 -114487026 + AT_rich Low_complexity Low_complexity 1 22 0 3 636 24 0 0 0 chr12 6770743 6770767 -114486763 + AT_rich Low_complexity Low_complexity 1 24 0 3 636 259 286 102 0 chr12 6772575 6772673 -114484857 + ERVL-E-int LTR ERVL 4913 5020 -647 3 636 203 254 16 48 chr12 6773495 6773557 -114483973 + L2b LINE L2 3316 3375 0 3 636 482 344 94 52 chr12 6774246 6774513 -114483017 + B4A SINE B4 3 280 -12 3 636 248 159 141 16 chr12 6775920 6775984 -114481546 - Lx5 LINE L1 -3 7047 6976 3 636 222 232 0 14 chr12 6777543 6777613 -114479917 + T-rich Low_complexity Low_complexity 6 74 0 3 636 646 96 0 0 chr12 6777753 6777847 -114479683 + 4.5SRNA scRNA scRNA 1 94 0 3 636 36597 11 1 7 chr12 6777851 6783274 -114474256 + L1Md_A LINE L1 198 5586 -297 3 636 8877 11 0 0 chr12 6783274 6784268 -114473262 + L1Md_A LINE L1 5587 6580 -2 3 636 329 302 81 51 chr12 6784617 6784676 -114472854 + CYRA11_Mm Unknown Y-chromosome 106 171 -446 3 636 1052 181 11 5 chr12 6784676 6784865 -114472665 - URR1B DNA MER1_type 0 225 36 3 636 356 355 14 48 chr12 6785453 6785530 -114472000 - B4A SINE B4 -20 272 201 3 636 2992 189 116 31 chr12 6785530 6786365 -114471165 + RMER17A2 LTR ERVK 1 906 0 3 636 356 355 14 48 chr12 6786365 6786432 -114471098 - B4A SINE B4 -92 200 133 3 636 1123 295 16 68 chr12 6786608 6787037 -114470493 + RMER1B Other Other 7 413 -653 3 636 2540 220 76 44 chr12 6787026 6787702 -114469828 + RMER1A Other Other 75 877 -153 3 636 411 21 0 0 chr12 6787702 6787750 -114469780 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 3 636 2540 191 69 45 chr12 6787750 6787871 -114469659 + RMER1A Other Other 878 1025 -5 3 636 22 35 0 0 chr12 6789124 6789153 -114468377 + AT_rich Low_complexity Low_complexity 1 29 0 3 636 352 298 8 0 chr12 6789664 6789785 -114467745 + L1M4 LINE L1 802 923 -5619 3 636 301 315 30 18 chr12 6789829 6789997 -114467533 - L1MA9 LINE L1 -342 5970 5801 3 636 313 269 111 70 chr12 6790374 6790546 -114466984 + L1M4 LINE L1 1458 1636 -5010 3 636 245 368 11 0 chr12 6790676 6790763 -114466767 - PB1D7 SINE Alu -13 107 20 3 636 26 50 0 0 chr12 6791545 6791585 -114465945 + AT_rich Low_complexity Low_complexity 1 40 0 3 636 711 54 0 0 chr12 6791585 6791677 -114465853 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 636 311 265 12 0 chr12 6791678 6791761 -114465769 - RSINE1 SINE B4 -38 127 44 3 636 400 307 28 28 chr12 6791860 6792004 -114465526 - MLT1A0 LTR MaLR -4 361 218 3 636 456 35 0 0 chr12 6792272 6792330 -114465200 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 636 414 0 0 0 chr12 6792330 6792376 -114465154 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 636 417 90 0 0 chr12 6792453 6792520 -114465010 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 636 279 283 169 20 chr12 6792887 6793035 -114464495 - MIRc SINE MIR -18 250 81 3 636 304 309 28 35 chr12 6793830 6793974 -114463556 + RSINE1 SINE B4 4 146 -19 3 636 527 227 7 0 chr12 6793974 6794128 -114463402 + (TGGA)n Simple_repeat Simple_repeat 1 155 0 3 636 409 133 34 34 chr12 6794189 6794306 -114463224 + GA-rich Low_complexity Low_complexity 5 121 0 3 636 522 0 0 0 chr12 6794318 6794376 -114463154 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 636 21 57 0 0 chr12 6794991 6795026 -114462504 + AT_rich Low_complexity Low_complexity 1 35 0 3 636 1138 70 0 0 chr12 6795634 6795777 -114461753 + B1_Mm SINE Alu 2 144 -3 3 636 225 200 0 0 chr12 6796802 6796847 -114460683 + A-rich Low_complexity Low_complexity 1 45 0 3 636 392 302 35 28 chr12 6797232 6797375 -114460155 - Charlie17a DNA MER1_type -48 171 28 3 636 2164 180 26 0 chr12 6798146 6798529 -114459001 - ORR1B1 LTR MaLR -1 393 1 3 636 428 48 16 0 chr12 6800876 6800939 -114456591 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 636 555 335 0 0 chr12 6801135 6801323 -114456207 - Lx8 LINE L1 -172 7301 7114 3 636 276 149 0 0 chr12 6801972 6802019 -114455511 + (T)n Simple_repeat Simple_repeat 1 47 0 3 636 692 332 109 4 chr12 6802685 6802942 -114454588 - ORR1D2 LTR MaLR 0 370 87 3 636 360 103 0 0 chr12 6803127 6803185 -114454345 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 636 9152 79 3 19 chr12 6803478 6803508 -114454022 - L1VL1 LINE L1 -1714 4169 4143 3 636 3064 110 40 2 chr12 6803508 6803963 -114453567 - L1_Mus1 LINE L1 -6 6561 6090 3 636 9152 79 3 19 chr12 6803963 6804137 -114453393 - L1VL1 LINE L1 -1741 4142 3970 3 636 3519 10 5 0 chr12 6804137 6804531 -114452999 + MTA_Mm LTR MaLR 1 396 0 3 636 9152 79 3 19 chr12 6804531 6804676 -114452854 - L1VL1 LINE L1 -1914 3969 3827 3 636 1872 168 10 3 chr12 6804676 6804980 -114452550 + RLTR27 LTR ERVK 1 306 -3 3 636 9152 79 3 19 chr12 6804980 6806009 -114451521 - L1VL1 LINE L1 -2057 3826 2813 3 636 5144 78 3 3 chr12 6805999 6807155 -114450375 - L1VL1 LINE L1 -4089 1794 639 3 636 804 148 0 15 chr12 6807151 6807281 -114450249 - L1VL1 LINE L1 -6131 507 380 3 636 311 139 151 0 chr12 6807272 6807358 -114450172 - L1M LINE L1 -817 5363 5265 3 636 618 259 97 32 chr12 6807736 6808003 -114449527 - MLT1C LTR MaLR -170 297 7 3 636 1282 302 48 26 chr12 6808104 6808784 -114448746 - L1M4 LINE L1 -1435 4711 4017 3 636 849 180 122 140 chr12 6809096 6809425 -114448105 - Lx LINE L1 -1 6653 6331 3 636 843 86 0 0 chr12 6809459 6809576 -114447954 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 3 636 976 98 20 20 chr12 6809577 6809723 -114447807 - B1_Mus1 SINE Alu -1 147 2 3 636 274 220 0 0 chr12 6809764 6809814 -114447716 + MTEa LTR MaLR 1 50 -329 3 636 2607 68 3 0 chr12 6809828 6810164 -114447366 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 79 53722 20 9 3 chr12 6810164 6816593 -114440937 + IAPEz-int LTR ERVK 8 6479 -2 3 637 2607 68 3 0 chr12 6816595 6816931 -114440599 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 637 566 316 25 25 chr12 6817048 6817249 -114440281 + MTEa LTR MaLR 168 368 -11 3 637 235 154 106 15 chr12 6817287 6817353 -114440177 - MER53 DNA hAT -116 77 6 3 637 355 328 82 0 chr12 6818104 6818226 -114439304 - ID_B1 SINE B4 0 224 93 3 637 229 370 95 15 chr12 6818226 6818238 -114439292 - B1_Mur4 SINE Alu 0 147 3 3 637 1125 290 37 34 chr12 6819988 6820390 -114437140 - MTEb LTR MaLR -13 406 17 3 637 911 234 46 0 chr12 6820604 6820801 -114436729 - B3 SINE B2 0 216 11 3 637 26 64 0 0 chr12 6820825 6820872 -114436658 + AT_rich Low_complexity Low_complexity 1 47 0 3 637 27 81 0 0 chr12 6821969 6822031 -114435499 + AT_rich Low_complexity Low_complexity 1 62 0 3 637 264 208 0 0 chr12 6822251 6822299 -114435231 + Lx9 LINE L1 7152 7199 -445 3 637 189 186 22 44 chr12 6822616 6822706 -114434824 + (CATATA)n Simple_repeat Simple_repeat 1 88 0 3 637 433 302 16 16 chr12 6823831 6823959 -114433571 - B1_Mur1 SINE Alu -1 148 21 3 637 198 0 0 0 chr12 6824135 6824157 -114433373 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 3 637 543 136 0 68 chr12 6824183 6824301 -114433229 + L1Md_F2 LINE L1 6466 6575 -7 3 637 5347 80 1 1 chr12 6824315 6825029 -114432501 - L1_Mus1 LINE L1 -9 6558 5845 3 637 22 0 0 0 chr12 6825149 6825171 -114432359 + AT_rich Low_complexity Low_complexity 1 22 0 3 637 991 98 0 0 chr12 6825172 6825305 -114432225 + B1_Mus1 SINE Alu 3 135 -13 3 637 261 0 0 0 chr12 6825306 6825335 -114432195 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 637 6878 179 85 28 chr12 6829351 6831113 -114426417 - L1_Mur2 LINE L1 -1557 4320 2459 3 637 31983 91 10 6 chr12 6831153 6836397 -114421133 + L1Md_F2 LINE L1 319 5585 -298 3 637 7996 52 2 1 chr12 6836399 6837393 -114420137 + L1Md_F2 LINE L1 5588 6582 0 3 637 372 170 0 5 chr12 6837411 6837504 -114420026 + L1_Mur2 LINE L1 3271 3361 -2519 3 637 265 342 23 84 chr12 6837508 6837639 -114419891 - ORR1E LTR MaLR -234 125 3 3 637 438 332 137 0 chr12 6837648 6837889 -114419641 - ORR1E-int LTR MaLR -11 1359 1086 3 637 306 0 0 0 chr12 6837961 6837995 -114419535 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 637 654 37 0 0 chr12 6837995 6838075 -114419455 + (GA)n Simple_repeat Simple_repeat 1 81 0 3 637 239 221 48 16 chr12 6838105 6838229 -114419301 + GA-rich Low_complexity Low_complexity 4 131 0 3 637 435 349 61 5 chr12 6838244 6838440 -114419090 - ORR1E-int LTR MaLR -1373 207 1 3 637 462 359 74 88 chr12 6838450 6838801 -114418729 - ORR1E LTR MaLR -9 350 5 3 637 294 29 0 0 chr12 6839001 6839036 -114418494 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 637 549 0 0 0 chr12 6839325 6839386 -114418144 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 637 270 0 0 0 chr12 6839386 6839415 -114418115 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 637 378 0 0 0 chr12 6840283 6840325 -114417205 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 637 243 88 0 0 chr12 6840762 6840796 -114416734 + (TATAG)n Simple_repeat Simple_repeat 2 35 0 3 637 21 0 0 0 chr12 6841286 6841307 -114416223 + AT_rich Low_complexity Low_complexity 1 21 0 3 637 198 293 84 21 chr12 6842568 6842579 -114414951 - MIR SINE MIR -1 261 250 3 637 371 21 21 0 chr12 6842579 6842627 -114414903 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 637 219 293 84 21 chr12 6842627 6842758 -114414772 - MIRb SINE MIR -15 253 110 3 637 671 86 34 0 chr12 6844017 6844134 -114413396 + (GA)n Simple_repeat Simple_repeat 2 122 0 3 637 252 196 0 0 chr12 6845524 6845570 -114411960 - RLTR19-int LTR ERVK -2944 3193 3148 3 637 1088 132 26 5 chr12 6845590 6845780 -114411750 - L1_Mus3 LINE L1 -6 6632 6439 3 637 238 307 107 87 chr12 6845982 6846132 -114411398 + B4A SINE B4 3 155 -137 3 637 441 36 0 0 chr12 6846156 6846211 -114411319 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 637 486 0 0 0 chr12 6846211 6846265 -114411265 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 637 325 246 101 0 chr12 6846269 6846338 -114411192 + B3 SINE B2 18 93 -123 3 637 219 36 0 0 chr12 6846476 6846504 -114411026 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 637 1185 224 117 67 chr12 6846508 6846948 -114410582 + RLTR20B3 LTR ERVK 22 476 -101 4 637 351 0 0 0 chr12 6846948 6846987 -114410543 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 637 1185 214 119 64 chr12 6846987 6847034 -114410496 + RLTR20B3 LTR ERVK 477 533 -44 4 637 22 0 0 0 chr12 6847037 6847059 -114410471 + AT_rich Low_complexity Low_complexity 1 22 0 4 637 291 210 129 0 chr12 6849326 6849388 -114408142 + B2_Mm2 SINE B2 32 101 -94 4 637 24 77 0 0 chr12 6849443 6849495 -114408035 + AT_rich Low_complexity Low_complexity 1 52 0 4 637 204 40 0 0 chr12 6850095 6850120 -114407410 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 4 637 463 356 35 52 chr12 6850154 6850385 -114407145 + MLT1J-int LTR MaLR 943 1169 -218 4 637 5892 186 33 24 chr12 6850788 6852629 -114404901 + Lx2B LINE L1 5110 6992 -8 4 637 265 259 125 65 chr12 6852862 6853120 -114404410 + L1M5 LINE L1 3670 3939 -2207 4 637 1214 268 53 12 chr12 6853242 6853736 -114403794 + L1M2 LINE L1 4632 5145 -998 4 637 226 277 31 0 chr12 6854061 6854126 -114403404 + MTE2b LTR MaLR 294 360 -19 4 637 663 277 77 5 chr12 6854139 6854481 -114403049 + L1M2 LINE L1 5231 5598 -570 4 637 330 355 13 19 chr12 6854607 6854765 -114402765 + MTD LTR MaLR 1 157 -262 4 637 239 297 0 0 chr12 6854834 6854898 -114402632 + RCHARR1 DNA MER1_type 686 749 -225 4 637 651 250 40 0 chr12 6855061 6855209 -114402321 + Tigger12c DNA MER2_type 576 729 -5 4 637 189 0 0 0 chr12 6855660 6855681 -114401849 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 637 721 135 0 36 chr12 6855714 6855852 -114401678 - URR1B DNA MER1_type -4 221 89 4 637 523 331 6 0 chr12 6856508 6856668 -114400862 - B3A SINE B2 -37 161 1 4 637 1790 168 6 30 chr12 6856763 6857100 -114400430 - ORR1A4 LTR MaLR 0 329 1 4 637 332 305 192 19 chr12 6859115 6859267 -114398263 + Lx8 LINE L1 6164 6346 -1127 4 637 366 23 0 0 chr12 6859267 6859310 -114398220 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 637 332 305 192 19 chr12 6859310 6859371 -114398159 + Lx8 LINE L1 6347 6414 -1059 4 637 1913 333 65 14 chr12 6859377 6860282 -114397248 + Lx8 LINE L1 6522 7472 -1 4 637 262 296 0 49 chr12 6862070 6862212 -114395318 + T-rich Low_complexity Low_complexity 1 135 0 4 637 401 340 67 74 chr12 6862896 6863207 -114394323 + B4 SINE B4 1 281 -11 4 637 26 30 0 0 chr12 6864208 6864241 -114393289 + AT_rich Low_complexity Low_complexity 1 33 0 4 637 21 0 0 0 chr12 6864321 6864342 -114393188 + AT_rich Low_complexity Low_complexity 1 21 0 4 637 261 378 190 9 chr12 6865651 6866183 -114391347 + L2 LINE L2 1354 1981 -1438 4 637 306 282 77 44 chr12 6866481 6866663 -114390867 - L1M5 LINE L1 -751 5395 5208 4 637 339 336 25 25 chr12 6866723 6866842 -114390688 - B4 SINE B4 -172 120 2 4 637 782 300 9 5 chr12 6868196 6868407 -114389123 - MTE2b LTR MaLR -17 362 151 4 637 333 365 53 12 chr12 6868585 6868754 -114388776 + B4A SINE B4 2 177 -115 4 637 229 286 32 0 chr12 6869064 6869127 -114388403 + B1_Mur4 SINE Alu 59 123 -27 4 637 225 0 0 0 chr12 6869142 6869167 -114388363 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 637 555 16 0 0 chr12 6869167 6869230 -114388300 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 637 21 82 0 0 chr12 6869349 6869398 -114388132 + AT_rich Low_complexity Low_complexity 1 49 0 4 637 393 354 78 12 chr12 6870116 6870373 -114387157 + L1MD LINE L1 2666 2939 -3207 4 637 575 271 79 110 chr12 6870468 6871343 -114386187 + L1M2 LINE L1 4492 5333 -810 4 637 22 0 0 0 chr12 6871515 6871537 -114385993 + AT_rich Low_complexity Low_complexity 1 22 0 4 637 401 309 54 92 chr12 6871592 6871941 -114385589 + L1ME3 LINE L1 4905 5240 -906 4 637 304 274 42 8 chr12 6872019 6872137 -114385393 + L1MD LINE L1 5328 5449 -2546 4 637 621 0 0 0 chr12 6872257 6872326 -114385204 + (TAAAA)n Simple_repeat Simple_repeat 4 72 0 4 637 278 319 11 17 chr12 6872383 6872562 -114384968 + L1ME3 LINE L1 5791 5969 -195 4 637 980 285 29 34 chr12 6872806 6873187 -114384343 - MTE2b LTR MaLR 0 379 1 4 637 321 26 0 0 chr12 6873391 6873429 -114384101 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 637 441 0 0 0 chr12 6873429 6873477 -114384053 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 637 741 275 103 59 chr12 6873581 6874107 -114383423 - L1MA8 LINE L1 -229 6062 5514 4 637 32933 72 2 33 chr12 6874108 6879320 -114378210 - L1Md_F2 LINE L1 0 6582 1391 4 637 3025 64 0 13 chr12 6879320 6879717 -114377813 - L1Md_F3 LINE L1 -1 6583 6192 4 637 32933 76 1 16 chr12 6879717 6880907 -114376623 - L1Md_F2 LINE L1 -4493 1390 367 4 637 992 75 23 0 chr12 6880964 6881137 -114376393 + (TA)n Simple_repeat Simple_repeat 1 177 0 4 637 388 319 45 19 chr12 6881306 6881574 -114375956 - L1MA8 LINE L1 -864 5279 5005 4 637 279 0 0 0 chr12 6881745 6881776 -114375754 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 637 2155 279 65 20 chr12 6881861 6882557 -114374973 + Lx9 LINE L1 507 1233 -6375 4 637 3719 245 108 21 chr12 6882669 6883491 -114374039 + Lx9 LINE L1 6176 7091 -553 4 637 3281 171 48 10 chr12 6883491 6884099 -114373431 + Lx4A LINE L1 6413 7043 -15 4 637 300 53 0 0 chr12 6884099 6884137 -114373393 + (CAT)n Simple_repeat Simple_repeat 3 40 0 4 637 3719 245 108 21 chr12 6884137 6884468 -114373062 + Lx9 LINE L1 7092 7430 -214 4 637 405 0 0 0 chr12 6884502 6884547 -114372983 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 637 414 39 0 0 chr12 6885129 6885181 -114372349 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 637 261 276 223 6 chr12 6886170 6886327 -114371203 - MIRb SINE MIR -14 254 64 4 637 1881 61 0 31 chr12 6886411 6886666 -114370864 + L1_Mus1 LINE L1 6321 6567 0 4 637 1269 99 22 0 chr12 6886695 6886877 -114370653 + B2_Mm2 SINE B2 1 186 -9 4 637 244 286 22 0 chr12 6887899 6887990 -114369540 + L1MD LINE L1 5199 5291 -855 4 637 243 0 0 0 chr12 6887998 6888025 -114369505 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 637 227 211 0 37 chr12 6888038 6888092 -114369438 + BC1_Mm scRNA scRNA 2 53 -99 4 637 285 288 125 43 chr12 6888557 6888862 -114368668 + L1MB4 LINE L1 5843 6172 -8 4 637 21 0 0 0 chr12 6888920 6888941 -114368589 + AT_rich Low_complexity Low_complexity 1 21 0 4 637 190 219 0 40 chr12 6889799 6889875 -114367655 + CT-rich Low_complexity Low_complexity 4 76 0 4 637 285 338 54 42 chr12 6890162 6890329 -114367201 - B4 SINE B4 -119 173 5 4 637 200 192 0 37 chr12 6890503 6890557 -114366973 + T-rich Low_complexity Low_complexity 3 54 0 4 637 380 340 105 34 chr12 6890572 6891024 -114366506 - L1MEc LINE L1 -4798 1665 1119 4 637 22 0 0 0 chr12 6891041 6891063 -114366467 + AT_rich Low_complexity Low_complexity 1 22 0 4 637 7869 57 2 2 chr12 6891137 6892131 -114365399 - L1Md_F2 LINE L1 -2 6580 5587 4 637 298 329 51 58 chr12 6892291 6892604 -114364926 - L1MEc LINE L1 -5562 901 591 4 637 360 278 36 18 chr12 6892707 6892817 -114364713 + B1_Mur1 SINE Alu 21 132 -17 4 637 1816 156 55 9 chr12 6892818 6893161 -114364369 - RLTR15 LTR ERVK 0 359 1 4 637 222 171 0 0 chr12 6893215 6893256 -114364274 + (CAT)n Simple_repeat Simple_repeat 3 43 0 4 637 263 366 26 9 chr12 6893925 6894038 -114363492 - PB1D9 SINE Alu -5 115 1 4 637 237 167 0 23 chr12 6894007 6894050 -114363480 - MT2B2 LTR ERVL -389 195 154 4 637 712 165 22 43 chr12 6894629 6894768 -114362762 - B1_Mur3 SINE Alu -1 148 13 4 637 253 146 36 0 chr12 6894771 6894826 -114362704 - L1M3 LINE L1 -363 5817 5761 4 637 1687 138 50 44 chr12 6894842 6895161 -114362369 - ORR1A4 LTR MaLR -8 321 1 4 637 690 247 46 52 chr12 6895214 6895412 -114362118 - L1M3 LINE L1 -566 5602 5405 4 637 2024 58 0 154 chr12 6895412 6895757 -114361773 + RLTR10B LTR ERVK 1 292 0 4 637 690 253 65 46 chr12 6895757 6895929 -114361601 - L1M3 LINE L1 -896 5404 5218 4 637 2051 324 93 45 chr12 6896311 6897489 -114360041 + Lx8 LINE L1 6180 7414 -59 4 637 305 138 0 30 chr12 6897511 6897578 -114359952 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 4 637 24 0 0 0 chr12 6897594 6897618 -114359912 + AT_rich Low_complexity Low_complexity 1 24 0 4 637 1496 322 117 28 chr12 6898339 6898924 -114358606 - Lx6 LINE L1 -60 7400 6742 4 637 184 30 29 29 chr12 6898924 6898958 -114358572 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 637 1496 278 29 32 chr12 6898958 6899273 -114358257 - Lx6 LINE L1 -719 6741 6215 4 637 207 100 0 0 chr12 6899428 6899458 -114358072 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 4 637 503 308 125 61 chr12 6899613 6900002 -114357528 - L1MA4 LINE L1 -1677 5967 5587 4 637 4326 151 10 42 chr12 6901754 6902274 -114355256 - L1_Mm LINE L1 -60 5823 5310 4 637 4805 121 28 4 chr12 6902274 6903015 -114354515 + Lx3_Mus LINE L1 6251 7009 0 4 637 4326 151 10 42 chr12 6903015 6903287 -114354243 - L1_Mm LINE L1 -574 5309 5056 4 637 5217 111 22 9 chr12 6903287 6904090 -114353440 + Lx LINE L1 5838 6651 -3 4 637 1258 181 19 30 chr12 6904316 6904583 -114352947 + Lx2 LINE L1 6734 6997 0 4 637 26 30 0 0 chr12 6904950 6904983 -114352547 + AT_rich Low_complexity Low_complexity 1 33 0 4 637 31 0 0 0 chr12 6905043 6905074 -114352456 + AT_rich Low_complexity Low_complexity 1 31 0 4 637 1676 31 0 0 chr12 6905153 6905346 -114352184 + B2_Mm1t SINE B2 1 193 0 4 637 49 0 0 0 chr12 6905712 6905761 -114351769 + AT_rich Low_complexity Low_complexity 1 49 0 4 637 207 196 0 0 chr12 6906356 6906402 -114351128 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 637 31 68 0 0 chr12 6906653 6906712 -114350818 + AT_rich Low_complexity Low_complexity 1 59 0 4 637 402 85 0 0 chr12 6906756 6906815 -114350715 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 637 216 0 0 0 chr12 6907185 6907209 -114350321 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 637 22 56 0 0 chr12 6908065 6908101 -114349429 + AT_rich Low_complexity Low_complexity 1 36 0 4 637 605 226 79 9 chr12 6908398 6908612 -114348918 + L1_Mur3 LINE L1 4112 4340 -1540 4 637 1209 235 8 4 chr12 6908636 6908892 -114348638 - Lx9 LINE L1 -719 6925 6669 4 637 505 273 7 13 chr12 6908892 6909037 -114348493 + Lx9 LINE L1 7269 7414 -230 4 637 971 88 0 0 chr12 6909037 6909173 -114348357 + L1_Mus2 LINE L1 6430 6565 -1 4 637 192 135 0 0 chr12 6909181 6909218 -114348312 + (A)n Simple_repeat Simple_repeat 1 37 0 5 637 411 132 36 0 chr12 6909218 6909301 -114348229 + Lx9 LINE L1 7401 7486 -158 5 637 1084 280 45 58 chr12 6909304 6909839 -114347691 - MT2B LTR ERVL 0 601 1 5 637 397 250 8 0 chr12 6909841 6909965 -114347565 + Lx9 LINE L1 7513 7637 -7 5 637 378 0 0 0 chr12 6910391 6910433 -114347097 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 637 387 0 0 0 chr12 6910433 6910475 -114347055 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 637 745 307 87 13 chr12 6912509 6913050 -114344480 + L1MB8 LINE L1 4803 5383 -763 5 637 21 36 0 0 chr12 6913295 6913323 -114344207 + AT_rich Low_complexity Low_complexity 1 28 0 5 637 2327 102 8 0 chr12 6913542 6913896 -114343634 + L1Md_F2 LINE L1 1721 2077 -3806 5 637 22445 77 2 1 chr12 6913880 6917193 -114340337 + L1Md_F2 LINE L1 2828 6143 -439 5 637 3870 86 25 9 chr12 6917193 6917746 -114339784 + L1Md_F2 LINE L1 6011 6572 -10 5 637 350 353 75 42 chr12 6917759 6917995 -114339535 + L1MB8 LINE L1 5907 6148 -36 5 637 180 111 0 0 chr12 6918270 6918297 -114339233 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 637 21 0 0 0 chr12 6918623 6918644 -114338886 + AT_rich Low_complexity Low_complexity 1 21 0 5 637 443 160 11 0 chr12 6918783 6918877 -114338653 + CT-rich Low_complexity Low_complexity 2 96 0 5 637 441 357 103 34 chr12 6918982 6919565 -114337965 - L1M4 LINE L1 -1203 4943 4321 5 637 351 206 43 0 chr12 6920074 6920166 -114337364 + MER89-int LTR ERV1 2256 2351 -4450 5 637 180 77 0 0 chr12 6920395 6920421 -114337109 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 637 180 0 0 0 chr12 6920435 6920455 -114337075 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 637 21 0 0 0 chr12 6921088 6921109 -114336421 + AT_rich Low_complexity Low_complexity 1 21 0 5 637 428 327 87 26 chr12 6921370 6921913 -114335617 - L1MC LINE L1 -2302 3844 3269 5 637 234 125 0 0 chr12 6922173 6922221 -114335309 + (A)n Simple_repeat Simple_repeat 1 48 0 5 637 263 225 21 53 chr12 6922300 6922394 -114335136 + L1MC LINE L1 3874 3964 -2182 5 637 737 98 0 9 chr12 6922475 6922588 -114334942 + (TA)n Simple_repeat Simple_repeat 2 113 0 5 637 249 275 117 18 chr12 6922590 6922670 -114334860 + RLTR22_Mur LTR ERVK 1308 1387 -461 5 637 596 279 7 0 chr12 6922670 6922810 -114334720 - B1_Mur2 SINE Alu -8 141 1 5 637 249 275 117 18 chr12 6922810 6922840 -114334690 + RLTR22_Mur LTR ERVK 1388 1429 -419 5 637 341 333 125 55 chr12 6922840 6923167 -114334363 + L1MC LINE L1 4026 4375 -1771 5 637 1205 61 0 0 chr12 6923223 6923370 -114334160 + B1_Mus1 SINE Alu 2 148 0 5 637 293 303 116 15 chr12 6923411 6923609 -114333921 + L1MC LINE L1 4403 4620 -1526 5 637 4321 31 0 2 chr12 6923614 6924127 -114333403 - L1Md_F2 LINE L1 -1 6581 6070 5 637 778 334 56 6 chr12 6924338 6924693 -114332837 - MTE2b LTR MaLR -6 373 1 5 637 295 289 12 12 chr12 6924875 6924959 -114332571 + B2_Mm2 SINE B2 17 100 -95 5 637 323 271 14 0 chr12 6925054 6925124 -114332406 + RSINE1 SINE B4 77 147 -18 5 637 1046 189 28 5 chr12 6925726 6925944 -114331586 - URR1A DNA MER1_type -2 224 2 5 637 2883 204 51 43 chr12 6928596 6929246 -114328284 - Lx5 LINE L1 -2 7048 6394 5 637 215 220 0 0 chr12 6930548 6930598 -114326932 + A-rich Low_complexity Low_complexity 1 50 0 5 637 275 373 58 34 chr12 6931211 6931419 -114326111 - L2 LINE L2 -610 2809 2597 5 637 662 303 59 87 chr12 6931527 6931940 -114325590 + MTE2a LTR MaLR 5 403 -16 5 637 2351 94 25 6 chr12 6932159 6932522 -114325008 + L1_Mus3 LINE L1 6261 6630 -8 5 637 396 370 47 64 chr12 6932720 6932954 -114324576 + ORR1E LTR MaLR 1 230 -140 5 637 258 255 124 29 chr12 6933520 6933625 -114323905 + L3 LINE CR1 4365 4479 -10 5 637 1062 121 0 0 chr12 6935054 6935294 -114322236 + (TG)n Simple_repeat Simple_repeat 1 240 0 5 637 24 0 0 0 chr12 6935334 6935358 -114322172 + AT_rich Low_complexity Low_complexity 1 24 0 5 637 486 120 0 0 chr12 6935623 6935698 -114321832 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 637 230 216 0 0 chr12 6936427 6936478 -114321052 - L1ME2 LINE L1 -1 6163 6113 5 637 421 345 40 29 chr12 6936494 6936667 -114320863 - B3A SINE B2 -7 191 17 5 637 492 18 0 0 chr12 6936667 6936724 -114320806 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 637 958 58 72 0 chr12 6936730 6936868 -114320662 - B1_Mus1 SINE Alu 0 148 1 5 637 24 32 0 0 chr12 6936933 6936964 -114320566 + AT_rich Low_complexity Low_complexity 1 31 0 5 637 385 331 107 36 chr12 6937073 6937436 -114320094 - L1ME2 LINE L1 -245 5919 5531 5 637 341 326 112 15 chr12 6937553 6937749 -114319781 - ID_B1 SINE B4 -9 215 1 5 637 438 277 23 90 chr12 6938413 6938679 -114318851 - L1ME2 LINE L1 -1410 4736 4489 5 637 365 300 94 62 chr12 6939114 6939487 -114318043 - L1ME2 LINE L1 -1812 4334 3950 5 637 522 290 51 0 chr12 6939486 6939700 -114317830 + Lx9 LINE L1 7401 7625 -19 5 637 438 20 0 0 chr12 6939816 6939867 -114317663 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 637 1302 129 4 39 chr12 6940312 6940546 -114316984 - Lx LINE L1 -4 6650 6425 5 637 315 366 31 6 chr12 6940550 6940712 -114316818 - L1M4 LINE L1 -1085 5061 4896 5 637 4642 76 7 0 chr12 6940883 6941485 -114316045 - L1_Mus3 LINE L1 -217 6421 5816 5 637 1352 72 101 5 chr12 6941485 6941694 -114315836 + L1_Mus3 LINE L1 6402 6630 -8 5 637 441 257 167 19 chr12 6941894 6942152 -114315378 - L1M4 LINE L1 -1344 4802 4507 5 637 387 309 62 60 chr12 6942514 6942724 -114314806 - L1M4 LINE L1 -2657 3489 3281 5 637 417 54 0 0 chr12 6942724 6942780 -114314750 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 637 387 319 85 39 chr12 6942780 6942864 -114314666 - L1M4 LINE L1 -2866 3280 3190 5 637 1580 299 50 30 chr12 6943963 6944180 -114313350 - Lx9 LINE L1 -673 6971 6608 5 637 186 43 0 0 chr12 6944186 6944209 -114313321 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 637 1068 99 0 7 chr12 6944209 6944344 -114313186 - B1_Mus2 SINE Alu -11 136 2 5 637 1580 304 51 41 chr12 6944344 6944887 -114312643 - Lx9 LINE L1 -899 6745 6083 5 637 594 271 26 83 chr12 6945017 6945246 -114312284 + Lx9 LINE L1 6964 7179 -465 5 637 235 172 22 54 chr12 6945248 6945340 -114312190 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 637 540 324 71 0 chr12 6945347 6945572 -114311958 + Lx9 LINE L1 7198 7438 -206 5 637 459 35 0 0 chr12 6945591 6945648 -114311882 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 79 327 343 37 2 chr12 6946806 6946933 -114310597 + MIRb SINE MIR 53 186 -90 5 638 868 272 108 35 chr12 6947317 6947603 -114309927 + Lx8 LINE L1 7109 7415 -58 5 638 234 0 0 0 chr12 6947630 6947656 -114309874 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 638 477 138 0 0 chr12 6949314 6949394 -114308136 + (TTCA)n Simple_repeat Simple_repeat 1 80 0 5 638 608 194 0 0 chr12 6949394 6949502 -114308028 - B1_Mus1 SINE Alu -2 146 39 5 638 524 81 0 33 chr12 6949506 6949596 -114307934 + L1Md_F2 LINE L1 6494 6580 -2 5 638 261 0 0 0 chr12 6949645 6949674 -114307856 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 638 1750 100 0 0 chr12 6949853 6950094 -114307436 - L1_Mus3 LINE L1 -231 6407 6167 5 638 1538 97 17 8 chr12 6950097 6950335 -114307195 + L1_Mus3 LINE L1 6396 6635 -3 5 638 244 0 56 0 chr12 6950581 6950617 -114306913 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 5 638 535 162 0 10 chr12 6950684 6950784 -114306746 - Lx2B LINE L1 -14 6986 6888 5 638 578 288 80 49 chr12 6950793 6951075 -114306455 + MTE2a LTR MaLR 103 359 0 5 638 198 0 0 0 chr12 6952063 6952085 -114305445 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 5 638 350 274 49 82 chr12 6952453 6952636 -114304894 - L1M5 LINE L1 -693 5431 5255 5 638 25 0 0 0 chr12 6953549 6953574 -114303956 + AT_rich Low_complexity Low_complexity 1 25 0 5 638 231 367 30 30 chr12 6953698 6953830 -114303700 - Lx8 LINE L1 -122 7351 7220 5 638 292 238 0 12 chr12 6954279 6954360 -114303170 + L1ME2 LINE L1 6073 6152 -12 5 638 590 351 112 9 chr12 6954366 6954688 -114302842 + MTEb LTR MaLR 20 374 -5 5 638 27 81 0 0 chr12 6954791 6954853 -114302677 + AT_rich Low_complexity Low_complexity 1 62 0 5 638 1571 47 0 5 chr12 6955235 6955429 -114302101 - B2_Mm1a SINE B2 0 193 1 5 638 242 194 16 0 chr12 6956393 6956455 -114301075 + GA-rich Low_complexity Low_complexity 3 65 0 5 638 2947 65 3 8 chr12 6956899 6957288 -114300242 + L1Md_F3 LINE L1 6198 6584 0 5 638 263 289 96 91 chr12 6958030 6958239 -114299291 + MIRb SINE MIR 21 230 -38 5 638 213 389 41 14 chr12 6961108 6961254 -114296276 - MIR SINE MIR -65 197 48 5 638 409 370 43 11 chr12 6961785 6961971 -114295559 - ORR1E LTR MaLR -167 192 1 5 638 536 286 121 64 chr12 6961973 6962080 -114295450 - MTE-int LTR MaLR -1173 407 288 5 638 405 0 0 0 chr12 6962080 6962125 -114295405 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 638 536 296 102 76 chr12 6962125 6962337 -114295193 - MTE-int LTR MaLR -1410 325 112 5 638 298 293 97 60 chr12 6962566 6962751 -114294779 - ORR1E LTR MaLR -167 192 1 5 638 333 0 0 0 chr12 6962907 6962944 -114294586 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 638 441 0 0 0 chr12 6962981 6963030 -114294500 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 638 22 35 0 0 chr12 6964403 6964432 -114293098 + AT_rich Low_complexity Low_complexity 1 29 0 5 638 333 226 42 32 chr12 6964501 6964605 -114292925 + MER3 DNA MER1_type 67 171 -38 5 638 292 281 32 46 chr12 6966299 6966433 -114291097 - MTD LTR MaLR 0 419 244 5 638 1186 55 0 0 chr12 6966433 6966579 -114290951 + L1Md_F2 LINE L1 5441 5586 -297 5 638 7954 54 1 5 chr12 6966580 6967579 -114289951 + L1Md_F2 LINE L1 5588 6582 0 5 638 308 327 63 59 chr12 6969341 6969562 -114287968 + L1ME3A LINE L1 5891 6112 -61 5 638 473 324 54 75 chr12 6971005 6971147 -114286383 + B4A SINE B4 3 136 -156 5 638 374 0 0 21 chr12 6971147 6971194 -114286336 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 5 638 473 324 54 75 chr12 6971194 6971291 -114286239 + B4A SINE B4 137 237 -55 5 638 40 37 0 0 chr12 6971636 6971690 -114285840 + AT_rich Low_complexity Low_complexity 1 54 0 5 638 1391 126 0 5 chr12 6971718 6971933 -114285597 - Lx LINE L1 -7 6647 6434 5 638 726 281 96 107 chr12 6973928 6974283 -114283247 + ORR1E LTR MaLR 1 351 -8 5 638 252 155 42 0 chr12 6974346 6974417 -114283113 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 5 638 911 206 77 0 chr12 6974808 6975017 -114282513 + URR1B DNA MER1_type 1 225 0 5 638 808 276 139 24 chr12 6976003 6976255 -114281275 + MTD LTR MaLR 9 289 -130 6 638 459 0 0 0 chr12 6976260 6976311 -114281219 + (TATG)n Simple_repeat Simple_repeat 2 52 0 6 638 1899 64 0 16 chr12 6976311 6976565 -114280965 - L1Md_F2 LINE L1 -18 6564 6315 6 638 234 405 17 94 chr12 6977254 6977434 -114280096 + ID_B1 SINE B4 6 171 -53 6 638 235 253 152 0 chr12 6978228 6978307 -114279223 + MLT2B4 LTR ERVL 3 93 -463 6 638 228 321 183 5 chr12 6978295 6978486 -114279044 - MLT2B4 LTR ERVL -272 284 60 6 638 293 396 0 0 chr12 6978727 6978833 -114278697 + Lx8 LINE L1 7181 7286 -187 6 638 204 139 0 27 chr12 6978922 6978959 -114278571 + A-rich Low_complexity Low_complexity 1 36 0 6 638 500 332 18 7 chr12 6979274 6979437 -114278093 + ID_B1 SINE B4 81 246 -46 6 638 25 75 0 0 chr12 6980411 6980464 -114277066 + AT_rich Low_complexity Low_complexity 1 53 0 6 638 2170 209 24 21 chr12 6980599 6981068 -114276462 + RLTR20B1 LTR ERVK 1 470 -93 6 638 1218 143 5 0 chr12 6982310 6982519 -114275011 + Lx LINE L1 6439 6648 -6 6 638 356 314 57 174 chr12 6984326 6984573 -114272957 + MTE2b LTR MaLR 1 218 -161 6 638 294 29 0 0 chr12 6985285 6985320 -114272210 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 638 432 0 0 0 chr12 6985707 6985755 -114271775 + (TTA)n Simple_repeat Simple_repeat 3 50 0 6 638 459 52 0 0 chr12 6986518 6986576 -114270954 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 638 26 30 0 0 chr12 6987097 6987130 -114270400 + AT_rich Low_complexity Low_complexity 1 33 0 6 638 219 333 0 15 chr12 6987614 6987681 -114269849 - MIRm SINE MIR -101 175 110 6 638 429 20 0 0 chr12 6988362 6988412 -114269118 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 638 771 186 35 7 chr12 6988553 6988694 -114268836 + B1_Mur4 SINE Alu 1 145 -5 6 638 229 247 49 12 chr12 6989183 6989265 -114268265 + L1MA4 LINE L1 6018 6102 -198 6 638 24 0 0 0 chr12 6989474 6989498 -114268032 + AT_rich Low_complexity Low_complexity 1 24 0 6 638 953 144 202 0 chr12 6989588 6989776 -114267754 - URR1A DNA MER1_type 0 226 1 6 638 5168 124 18 6 chr12 6989848 6990650 -114266880 + Lx3A LINE L1 6171 6981 0 6 638 988 113 0 0 chr12 6990688 6990829 -114266701 - B2_Mm2 SINE B2 -49 146 6 6 638 1902 156 0 6 chr12 6990829 6991145 -114266385 + Lx3B LINE L1 6654 6967 -6 6 638 239 196 21 32 chr12 6991287 6991382 -114266148 + (ATG)n Simple_repeat Simple_repeat 3 96 0 6 638 24 0 0 0 chr12 6992614 6992638 -114264892 + AT_rich Low_complexity Low_complexity 1 24 0 6 638 486 0 0 0 chr12 6993183 6993237 -114264293 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 638 282 284 128 0 chr12 6993720 6993822 -114263708 - Lx9 LINE L1 -852 6792 6678 6 638 254 39 18 55 chr12 6995147 6995202 -114262328 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 6 638 684 282 34 0 chr12 6995815 6996021 -114261509 + B3 SINE B2 1 213 -3 6 638 1189 49 0 0 chr12 6997278 6997420 -114260110 + B1_Mus1 SINE Alu 1 142 -6 6 638 207 0 0 0 chr12 6997423 6997446 -114260084 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 638 1791 184 78 45 chr12 6997566 6998037 -114259493 - RMER6A LTR ERVK -2 688 1 6 638 261 241 0 33 chr12 6998206 6998266 -114259264 + RSINE1 SINE B4 108 165 0 6 638 371 21 0 20 chr12 6998317 6998366 -114259164 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 638 243 0 0 0 chr12 6998366 6998392 -114259138 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 638 505 265 71 141 chr12 6999151 6999349 -114258181 - B3A SINE B2 -11 184 1 6 638 261 0 0 0 chr12 7000561 7000590 -114256940 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 638 630 39 0 0 chr12 7000590 7000666 -114256864 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 638 3950 73 0 13 chr12 7000687 7001216 -114256314 - L1_Mus1 LINE L1 0 6567 6046 3 638 1095 101 0 0 chr12 7001541 7001689 -114255841 + B1_Mus1 SINE Alu 1 148 0 4 638 1431 72 0 0 chr12 7001717 7002023 -114255507 + (GA)n Simple_repeat Simple_repeat 1 306 0 5 638 1224 101 0 0 chr12 7002023 7002201 -114255329 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 638 495 33 0 0 chr12 7002523 7002584 -114254946 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 7 638 216 0 0 0 chr12 7004101 7004125 -114253405 + (T)n Simple_repeat Simple_repeat 1 24 0 8 638 4544 4 0 0 chr12 7004163 7004666 -114252864 - L1Md_A LINE L1 0 6582 6080 9 638 759 22 0 0 chr12 7004915 7005004 -114252526 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 1 638 182 37 0 36 chr12 7005684 7005712 -114251818 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 1 638 411 21 0 0 chr12 7006107 7006155 -114251375 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 638 230 305 37 119 chr12 7006703 7006837 -114250693 - B1F SINE Alu -5 144 22 1 638 538 377 7 48 chr12 7007062 7007357 -114250173 + Lx8 LINE L1 6990 7272 -201 1 638 2299 63 10 0 chr12 7007801 7008102 -114249428 + L1Md_A LINE L1 6279 6582 0 1 638 1347 56 28 0 chr12 7008409 7008657 -114248873 + (TTTC)n Simple_repeat Simple_repeat 1 254 0 1 638 1091 83 7 0 chr12 7008660 7008805 -114248725 - B1_Mus1 SINE Alu -1 147 2 1 638 1852 73 8 19 chr12 7008825 7009091 -114248439 - L1_Mus2 LINE L1 0 6566 6304 1 638 4764 117 142 1 chr12 7009670 7010449 -114247081 - L1_Mus4 LINE L1 -129 6507 5619 1 638 389 131 149 0 chr12 7010447 7010554 -114246976 + L1_Mus4 LINE L1 6513 6635 -1 1 638 24 0 0 0 chr12 7010585 7010609 -114246921 + AT_rich Low_complexity Low_complexity 1 24 0 2 638 645 14 0 0 chr12 7011154 7011228 -114246302 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 638 257 223 48 0 chr12 7011623 7011726 -114245804 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 2 638 810 31 0 0 chr12 7012056 7012153 -114245377 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 638 586 300 30 18 chr12 7012567 7012811 -114244719 - L1M5 LINE L1 -475 5649 5395 2 638 266 186 32 63 chr12 7012839 7012902 -114244628 + ID_B1 SINE B4 152 212 -12 2 638 384 22 0 0 chr12 7012902 7012947 -114244583 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 638 625 303 75 60 chr12 7013466 7013996 -114243534 - L1MC1 LINE L1 -20 6313 5776 2 638 1961 109 20 67 chr12 7013996 7014339 -114243191 - ORR1A4 LTR MaLR 0 329 3 2 638 5904 170 57 151 chr12 7014342 7014470 -114243060 - ORR1A4-int LTR MaLR 0 1963 1834 2 638 1361 80 55 5 chr12 7014470 7014672 -114242858 + L1_Mus2 LINE L1 6353 6564 -2 2 638 5904 170 57 151 chr12 7014672 7016182 -114241348 - ORR1A4-int LTR MaLR -130 1833 478 2 638 2421 222 131 79 chr12 7016185 7016298 -114241232 + RMER19B LTR ERVK 1 87 -815 3 638 396 0 0 0 chr12 7016298 7016342 -114241188 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 638 2421 222 131 79 chr12 7016342 7017078 -114240452 + RMER19B LTR ERVK 88 894 -8 3 638 2642 157 34 6 chr12 7017086 7017553 -114239977 - ORR1A4-int LTR MaLR -1483 480 1 2 638 1686 173 53 19 chr12 7017553 7017622 -114239908 - ORR1A4 LTR MaLR 0 329 247 2 638 3627 174 51 3 chr12 7017622 7018303 -114239227 - Lx LINE L1 -2 6652 5939 3 638 1686 173 53 19 chr12 7018303 7018551 -114238979 - ORR1A4 LTR MaLR -83 246 1 2 638 311 305 96 30 chr12 7018574 7018709 -114238821 - L1MC1 LINE L1 -580 5753 5610 2 638 2818 40 91 0 chr12 7019107 7019460 -114238070 - IAPEY_LTR LTR ERVK 0 385 1 3 638 309 262 36 48 chr12 7019493 7019577 -114237953 - B1F SINE Alu -21 99 17 3 638 318 115 0 0 chr12 7020037 7020098 -114237432 + (TATG)n Simple_repeat Simple_repeat 2 62 0 3 638 554 338 25 0 chr12 7020167 7020371 -114237159 + B3 SINE B2 3 211 -5 3 638 1454 52 0 0 chr12 7020427 7020600 -114236930 - B2_Mm1t SINE B2 -19 174 2 3 638 310 162 13 13 chr12 7022035 7022110 -114235420 + GA-rich Low_complexity Low_complexity 4 78 0 3 638 2476 78 3 0 chr12 7022616 7022938 -114234592 - ORR1A2 LTR MaLR -4 323 1 3 638 7331 70 4 25 chr12 7023727 7024795 -114232735 + L1_Mus2 LINE L1 5520 6565 -1 4 638 2753 47 0 0 chr12 7024923 7025261 -114232269 + L1Md_A LINE L1 6243 6580 -2 4 638 233 221 33 55 chr12 7025631 7025722 -114231808 - L1M5 LINE L1 -1481 4665 4577 4 638 24 32 0 0 chr12 7025990 7026021 -114231509 + AT_rich Low_complexity Low_complexity 1 31 0 4 638 1033 228 62 53 chr12 7027198 7027660 -114229870 + RLTR20C LTR ERVK 2 578 0 4 638 207 0 0 0 chr12 7028133 7028156 -114229374 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 4 638 278 26 26 0 chr12 7028291 7028330 -114229200 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 4 638 1079 257 102 17 chr12 7028739 7029083 -114228447 - ORR1D1 LTR MaLR -1 373 1 4 638 282 317 16 16 chr12 7031085 7031210 -114226320 + L1MA7 LINE L1 5603 5727 -585 4 638 21 57 0 0 chr12 7031346 7031381 -114226149 + AT_rich Low_complexity Low_complexity 1 35 0 4 638 257 0 30 0 chr12 7031566 7031599 -114225931 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 638 223 245 0 0 chr12 7031600 7031653 -114225877 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 638 262 241 11 44 chr12 7031693 7031784 -114225746 + L1MA7 LINE L1 6179 6266 -25 4 638 180 143 0 0 chr12 7031787 7031829 -114225701 + (CAGAGA)n Simple_repeat Simple_repeat 6 47 0 5 638 608 87 11 0 chr12 7031826 7031918 -114225612 + (GGA)n Simple_repeat Simple_repeat 2 94 0 5 638 3933 132 81 41 chr12 7032858 7033571 -114223959 + Lx LINE L1 5913 6654 0 5 638 403 372 39 6 chr12 7034127 7034308 -114223222 - MER5A DNA MER1_type -2 187 1 5 638 558 0 0 0 chr12 7034563 7034625 -114222905 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 638 207 344 29 59 chr12 7035259 7035361 -114222169 - MIR SINE MIR -141 127 23 5 638 306 0 0 0 chr12 7036305 7036339 -114221191 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 638 261 83 0 0 chr12 7037075 7037111 -114220419 + (A)n Simple_repeat Simple_repeat 1 36 0 5 638 881 136 14 0 chr12 7037960 7038107 -114219423 - URR1A DNA MER1_type 0 226 78 6 638 629 310 16 11 chr12 7038176 7038365 -114219165 - B3A SINE B2 -6 192 3 6 638 186 306 122 0 chr12 7038527 7038639 -114218891 + MIRb SINE MIR 22 148 -120 6 638 466 319 0 7 chr12 7038945 7039081 -114218449 - ID_B1 SINE B4 -12 212 78 6 638 953 259 75 31 chr12 7039200 7039558 -114217972 - ORR1D1 LTR MaLR 0 374 1 6 638 219 387 105 0 chr12 7039952 7040133 -114217397 + MIRb SINE MIR 19 218 -50 6 638 432 0 0 0 chr12 7040334 7040382 -114217148 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 638 408 323 100 0 chr12 7040422 7040552 -114216978 + RSINE1 SINE B4 7 149 -16 6 638 684 299 20 63 chr12 7040589 7040723 -114216807 + B4A SINE B4 3 133 -159 6 638 279 0 0 0 chr12 7040723 7040754 -114216776 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 638 684 299 20 63 chr12 7040754 7040922 -114216608 + B4A SINE B4 134 292 0 6 638 264 130 0 0 chr12 7041005 7041051 -114216479 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 7 638 422 18 0 18 chr12 7043356 7043412 -114214118 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 7 638 484 35 45 11 chr12 7043412 7043500 -114214030 - L1_Mus3 LINE L1 -33 6605 6515 7 638 24 0 0 0 chr12 7043611 7043635 -114213895 + AT_rich Low_complexity Low_complexity 1 24 0 7 638 21 0 0 0 chr12 7044029 7044050 -114213480 + AT_rich Low_complexity Low_complexity 1 21 0 7 638 1306 148 0 17 chr12 7044939 7045179 -114212351 + Lx2B LINE L1 6760 6995 -5 7 638 21 0 0 0 chr12 7045185 7045206 -114212324 + AT_rich Low_complexity Low_complexity 1 21 0 7 638 384 119 0 0 chr12 7045580 7045639 -114211891 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 638 3051 65 0 2 chr12 7045714 7046113 -114211417 + L1Md_F2 LINE L1 6185 6582 0 7 638 384 59 0 0 chr12 7046344 7046395 -114211135 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 638 513 0 0 0 chr12 7047758 7047815 -114209715 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 638 189 0 0 0 chr12 7047815 7047835 -114209695 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 638 303 238 45 98 chr12 7048492 7048604 -114208926 + Lx9 LINE L1 7008 7113 -531 8 638 230 330 85 0 chr12 7049116 7049222 -114208308 + MTEa LTR MaLR 3 117 -262 8 638 780 186 17 0 chr12 7049234 7049411 -114208119 + GA-rich Low_complexity Low_complexity 1 180 0 8 638 348 24 0 0 chr12 7049414 7049455 -114208075 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 8 638 549 0 0 0 chr12 7049491 7049552 -114207978 + (TC)n Simple_repeat Simple_repeat 2 62 0 8 638 26 0 0 0 chr12 7050009 7050035 -114207495 + AT_rich Low_complexity Low_complexity 1 26 0 8 638 303 276 31 54 chr12 7050346 7050476 -114207054 - MLT1A1 LTR MaLR 0 408 282 8 638 790 258 192 22 chr12 7050783 7051100 -114206430 + MTE2b LTR MaLR 1 371 -8 8 638 6724 115 42 7 chr12 7051100 7052473 -114205057 + Lx LINE L1 5229 6652 -2 9 638 1498 55 0 11 chr12 7053009 7053194 -114204336 - B2_Mm1a SINE B2 -9 184 2 9 638 22 35 0 0 chr12 7053370 7053399 -114204131 + AT_rich Low_complexity Low_complexity 1 29 0 9 638 317 360 0 46 chr12 7053449 7053501 -114204029 - ID_B1 SINE B4 0 224 100 9 638 335 354 0 0 chr12 7053501 7053580 -114203950 - PB1D7 SINE Alu -23 97 19 9 638 207 224 0 0 chr12 7054286 7054362 -114203168 + (CCA)n Simple_repeat Simple_repeat 1 76 0 9 638 381 255 0 0 chr12 7054385 7054542 -114202988 + (CCA)n Simple_repeat Simple_repeat 3 159 0 9 638 346 386 64 21 chr12 7054928 7055161 -114202369 - B4A SINE B4 -8 284 42 9 638 645 343 25 27 chr12 7055218 7055584 -114201946 - Lx8 LINE L1 -975 6498 6134 9 638 1265 339 123 3 chr12 7055606 7056272 -114201258 + Lx8 LINE L1 6494 7239 -234 9 638 415 128 11 11 chr12 7056707 7056794 -114200736 + (TG)n Simple_repeat Simple_repeat 1 87 0 9 638 180 0 0 0 chr12 7057658 7057678 -114199852 + (A)n Simple_repeat Simple_repeat 1 20 0 1 638 1074 364 73 2 chr12 7060400 7060841 -114196689 + MER21B LTR ERV1 283 754 -109 1 638 549 30 0 0 chr12 7061801 7061868 -114195662 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 638 747 343 44 7 chr12 7061872 7062145 -114195385 - B4A SINE B4 0 292 10 1 638 337 319 44 7 chr12 7062556 7062692 -114194838 + B1_Mur1 SINE Alu 1 141 -8 1 638 185 0 0 39 chr12 7062695 7062721 -114194809 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 638 516 168 16 8 chr12 7063304 7063430 -114194100 + CT-rich Low_complexity Low_complexity 2 128 0 1 638 323 352 62 0 chr12 7064121 7064266 -114193264 + MTEa LTR MaLR 18 171 -208 1 638 3005 111 16 7 chr12 7065126 7065578 -114191952 - Lx LINE L1 -5 6649 6194 1 638 19320 108 102 0 chr12 7066329 7069992 -114187538 - L1_Mus1 LINE L1 0 6567 2459 1 638 3214 43 2 2 chr12 7069992 7070387 -114187143 - L1Md_F3 LINE L1 0 6584 6190 1 638 19320 116 139 1 chr12 7070387 7070613 -114186917 - L1_Mus1 LINE L1 -3425 2458 2233 1 638 474 234 12 14 chr12 7070612 7070763 -114186767 - L1VL1 LINE L1 -6040 382 85 1 638 501 302 104 64 chr12 7072073 7072275 -114185255 - B3A SINE B2 -6 210 1 1 638 479 291 74 51 chr12 7072548 7072652 -114184878 - Lx8 LINE L1 -61 7412 7304 1 638 1216 188 5 0 chr12 7072652 7072876 -114184654 + URR1A DNA MER1_type 2 226 0 1 638 479 291 74 51 chr12 7072876 7073028 -114184502 - Lx8 LINE L1 -170 7303 7150 1 638 1576 221 42 91 chr12 7075318 7075746 -114181784 - MTD LTR MaLR 0 419 13 1 638 180 0 0 0 chr12 7075746 7075766 -114181764 + (A)n Simple_repeat Simple_repeat 1 20 0 1 638 415 263 58 45 chr12 7075892 7076019 -114181511 - L1MC4 LINE L1 -18 8024 7898 1 638 240 35 0 0 chr12 7076019 7076048 -114181482 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 638 415 263 58 45 chr12 7076048 7076163 -114181367 - L1MC4 LINE L1 -145 7897 7779 1 638 1113 108 0 0 chr12 7076330 7076497 -114181033 + (TTCC)n Simple_repeat Simple_repeat 3 169 0 1 638 574 271 144 63 chr12 7076542 7077050 -114180480 - L1MC4 LINE L1 -606 7436 6888 1 638 284 208 140 9 chr12 7077098 7077205 -114180325 - Lx9 LINE L1 -26 7618 7498 1 638 225 227 13 26 chr12 7077393 7077470 -114180060 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 1 638 542 167 9 38 chr12 7077488 7077594 -114179936 - Lx9 LINE L1 -388 7256 7154 1 639 22 0 0 0 chr12 7079698 7079720 -114177810 + AT_rich Low_complexity Low_complexity 1 22 0 1 639 201 121 0 0 chr12 7079894 7079927 -114177603 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 1 639 369 0 0 0 chr12 7080483 7080524 -114177006 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 639 297 0 0 0 chr12 7080524 7080556 -114176974 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 639 180 135 0 0 chr12 7080758 7080795 -114176735 + (A)n Simple_repeat Simple_repeat 1 37 0 1 639 249 322 33 50 chr12 7081214 7081335 -114176195 + L2 LINE L2 2721 2839 -580 1 639 568 337 47 5 chr12 7081612 7081803 -114175727 + ID_B1 SINE B4 26 224 0 1 639 4615 98 106 14 chr12 7082091 7082830 -114174700 - RLTR13C2 LTR ERVK 0 902 1 1 639 22 35 0 0 chr12 7082870 7082899 -114174631 + AT_rich Low_complexity Low_complexity 1 29 0 1 639 2893 98 9 14 chr12 7083195 7083619 -114173911 + L1_Mus3 LINE L1 6212 6633 -5 1 639 3384 175 7 0 chr12 7083996 7084589 -114172941 - Lx LINE L1 -297 5586 4990 1 639 6548 149 16 1 chr12 7084590 7085642 -114171888 + Lx LINE L1 5587 6654 0 1 639 188 34 0 33 chr12 7086860 7086890 -114170640 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 639 7247 71 14 2 chr12 7088712 7089967 -114167563 - L1Md_F2 LINE L1 0 6582 5307 1 639 516 264 56 61 chr12 7090450 7090648 -114166882 + B3A SINE B2 1 197 -1 1 639 303 341 71 6 chr12 7091199 7091382 -114166148 - L1MC LINE L1 -3007 3139 2945 1 639 782 297 35 0 chr12 7092076 7092278 -114165252 + B3 SINE B2 8 216 0 1 639 346 261 200 0 chr12 7092731 7092846 -114164684 - B1F SINE Alu -5 144 7 1 639 797 284 5 14 chr12 7092894 7093112 -114164418 - B3 SINE B2 0 216 1 1 639 274 343 40 34 chr12 7093416 7093564 -114163966 - MER20 DNA MER1_type -69 150 2 1 639 3344 141 51 24 chr12 7093728 7094353 -114163177 + RLTR26 LTR ERVK 1 642 0 1 639 823 103 0 0 chr12 7094353 7094470 -114163060 - B1_Mur4 SINE Alu -25 125 9 1 639 752 190 0 6 chr12 7095171 7095330 -114162200 + GA-rich Low_complexity Low_complexity 1 158 0 1 639 333 0 0 0 chr12 7095411 7095448 -114162082 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 1 639 300 238 16 0 chr12 7095456 7095519 -114162011 - ID4_ SINE ID -18 65 2 1 639 25 99 0 0 chr12 7095863 7095944 -114161586 + AT_rich Low_complexity Low_complexity 1 81 0 1 639 379 319 50 8 chr12 7096449 7096569 -114160961 + B1F SINE Alu 24 148 -1 1 639 270 116 0 0 chr12 7096711 7096754 -114160776 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 1 639 219 69 0 0 chr12 7096778 7096807 -114160723 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 639 546 29 0 0 chr12 7096807 7096874 -114160656 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 639 235 286 0 28 chr12 7097374 7097446 -114160084 + MER82 DNA MER2_type 8 77 -576 1 639 374 264 64 0 chr12 7097693 7097803 -114159727 + MER82 DNA MER2_type 532 648 -5 1 639 333 0 0 0 chr12 7098024 7098061 -114159469 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 639 269 266 73 45 chr12 7098232 7098390 -114159140 + L1MB5 LINE L1 6021 6182 -2 1 639 222 262 37 0 chr12 7098954 7099061 -114158469 + (TA)n Simple_repeat Simple_repeat 1 111 0 1 639 231 321 92 38 chr12 7099618 7099726 -114157804 + MIRc SINE MIR 10 135 -133 1 639 22 0 0 0 chr12 7099986 7100008 -114157522 + AT_rich Low_complexity Low_complexity 1 22 0 1 639 21 0 0 0 chr12 7101187 7101208 -114156322 + AT_rich Low_complexity Low_complexity 1 21 0 1 639 23 0 0 0 chr12 7102965 7102988 -114154542 + AT_rich Low_complexity Low_complexity 1 23 0 1 639 213 162 27 0 chr12 7103007 7103044 -114154486 - B1_Mus1 SINE Alu -109 39 2 1 639 384 367 28 28 chr12 7104362 7104575 -114152955 + MIR SINE MIR 35 247 -15 1 639 813 21 0 0 chr12 7104589 7104684 -114152846 + (TTC)n Simple_repeat Simple_repeat 2 96 0 1 639 27 0 0 0 chr12 7104944 7104971 -114152559 + AT_rich Low_complexity Low_complexity 1 27 0 1 639 345 100 0 0 chr12 7105957 7106007 -114151523 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1 639 207 0 0 0 chr12 7106458 7106481 -114151049 + (A)n Simple_repeat Simple_repeat 1 23 0 1 639 188 0 74 0 chr12 7107365 7107392 -114150138 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 639 7537 44 7 2 chr12 7107408 7108333 -114149197 - L1_Mus2 LINE L1 0 6566 5638 1 639 1848 89 0 16 chr12 7108330 7108580 -114148950 + L1_Mus2 LINE L1 5398 5643 -240 1 639 252 269 72 29 chr12 7108581 7108650 -114148880 + ID_B1 SINE B4 151 222 -2 1 639 360 293 90 28 chr12 7110239 7110450 -114147080 + HAL1 LINE L1 9 232 -2275 1 639 22 35 0 0 chr12 7111942 7111971 -114145559 + AT_rich Low_complexity Low_complexity 1 29 0 1 639 846 98 0 0 chr12 7111986 7112108 -114145422 + (GAAAA)n Simple_repeat Simple_repeat 4 125 0 1 639 259 233 89 0 chr12 7112397 7112487 -114145043 + MER5C DNA MER1_type 86 183 -130 1 639 333 0 0 0 chr12 7114525 7114562 -114142968 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 639 22 56 0 0 chr12 7114585 7114621 -114142909 + AT_rich Low_complexity Low_complexity 1 36 0 1 639 611 330 47 38 chr12 7114915 7115126 -114142404 + MER58A DNA MER1_type 12 224 0 1 639 600 304 55 37 chr12 7115652 7116089 -114141441 - L1M4c LINE L1 -4632 1752 1308 1 639 252 0 0 0 chr12 7116104 7116132 -114141398 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 639 349 252 89 71 chr12 7116135 7116467 -114141063 - L1M3c LINE L1 -4770 2267 1925 1 639 1907 290 101 28 chr12 7116797 7118290 -114139240 + L1M3 LINE L1 3486 5087 -1053 1 639 36862 6 0 0 chr12 7118434 7124015 -114133515 + L1Md_A LINE L1 6 5586 -297 1 639 9051 2 0 0 chr12 7124015 7125009 -114132521 + L1Md_A LINE L1 5587 6580 -2 1 639 484 181 70 6 chr12 7125115 7125271 -114132259 + L1M3 LINE L1 5468 5633 -658 1 639 234 0 0 0 chr12 7125741 7125767 -114131763 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 639 705 309 58 4 chr12 7126072 7126345 -114131185 - L3 LINE CR1 -119 4389 4090 1 639 320 390 58 66 chr12 7128097 7128462 -114129068 + L2 LINE L2 2705 3066 -353 1 639 6130 48 0 0 chr12 7129610 7130430 -114127100 - L1_Mm LINE L1 -3365 2518 1699 1 639 1131 68 0 0 chr12 7130429 7130575 -114126955 + L1Md_F2 LINE L1 5440 5585 -298 1 639 7961 52 8 0 chr12 7130576 7131563 -114125967 + L1Md_F2 LINE L1 5587 6581 -1 1 639 228 67 0 0 chr12 7132172 7132202 -114125328 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 639 2110 175 26 13 chr12 7132209 7132673 -114124857 + L1_Mur2 LINE L1 4781 5250 -627 1 639 637 298 82 21 chr12 7132761 7133042 -114124488 + Lx8 LINE L1 7172 7469 -4 1 639 1245 53 0 0 chr12 7133786 7133956 -114123574 + (TC)n Simple_repeat Simple_repeat 1 170 0 1 639 203 161 0 0 chr12 7135355 7135386 -114122144 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 639 1734 122 13 83 chr12 7137321 7137634 -114119896 - RMER6B LTR ERVK -170 291 1 1 639 984 146 0 0 chr12 7139046 7139224 -114118306 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 1 639 1697 71 13 4 chr12 7139532 7139771 -114117759 + L1_Mus3 LINE L1 6398 6638 0 1 639 323 345 133 43 chr12 7139801 7140365 -114117165 + L1MEd LINE L1 597 1211 -4908 1 639 336 127 0 0 chr12 7140569 7140624 -114116906 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 639 653 301 24 5 chr12 7140828 7141038 -114116492 + ID_B1 SINE B4 2 215 -9 1 639 233 118 20 0 chr12 7141046 7141097 -114116433 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 1 639 31 0 0 0 chr12 7141426 7141457 -114116073 + AT_rich Low_complexity Low_complexity 1 31 0 1 639 7100 73 1 25 chr12 7141457 7142514 -114115016 - L1_Mus1 LINE L1 -2 6565 5534 1 639 4876 129 6 11 chr12 7142511 7143339 -114114191 + L1_Mm LINE L1 4496 5319 -564 1 639 4827 197 52 10 chr12 7143382 7144486 -114113044 + Lx3C LINE L1 5825 6974 -2 2 639 996 153 4 0 chr12 7144865 7145133 -114112397 + GA-rich Low_complexity Low_complexity 1 269 0 2 639 283 325 64 64 chr12 7146277 7146481 -114111049 - MIRb SINE MIR -41 227 24 2 639 210 250 0 29 chr12 7146591 7146661 -114110869 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 639 343 224 6 44 chr12 7146669 7146851 -114110679 + (TATG)n Simple_repeat Simple_repeat 4 178 0 2 639 201 324 0 0 chr12 7146851 7146919 -114110611 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 639 26 50 0 0 chr12 7147727 7147767 -114109763 + AT_rich Low_complexity Low_complexity 1 40 0 2 639 275 279 71 18 chr12 7147802 7147915 -114109615 - Lx7 LINE L1 -4 7692 7574 2 639 5624 88 18 8 chr12 7148512 7149305 -114108225 - L1Md_F2 LINE L1 -2 6580 5780 2 639 1675 56 9 0 chr12 7149297 7149513 -114108017 - L1Md_F2 LINE L1 -13 6569 6352 2 639 931 49 0 0 chr12 7149513 7149636 -114107894 + L1Md_F2 LINE L1 6208 6330 -252 2 639 1884 80 30 0 chr12 7149635 7149897 -114107633 - L1Md_F LINE L1 -86 5797 5528 2 639 2229 145 154 83 chr12 7149897 7150462 -114107068 + RLTR6_Mm LTR ERV1 1 605 -49 2 639 50710 14 18 0 chr12 7150462 7156579 -114100951 + RLTR6-int LTR ERV1 1 6223 -1555 2 639 11149 19 14 0 chr12 7156577 7157904 -114099626 + RLTR6-int LTR ERV1 6433 7778 0 2 639 2369 96 241 30 chr12 7158013 7158473 -114099057 + RLTR6_Mm LTR ERV1 37 593 -61 2 639 27535 79 9 71 chr12 7158473 7158701 -114098829 - L1Md_F LINE L1 -357 5526 5273 2 639 5390 61 9 0 chr12 7158701 7159401 -114098129 - L1Md_F3 LINE L1 0 6584 5879 2 639 27535 85 13 63 chr12 7159401 7164616 -114092914 - L1Md_F LINE L1 -611 5272 359 2 639 212 196 0 18 chr12 7165469 7165526 -114092004 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 2 639 33 25 0 0 chr12 7165533 7165573 -114091957 + AT_rich Low_complexity Low_complexity 1 40 0 2 639 353 227 7 0 chr12 7165581 7165722 -114091808 + (TA)n Simple_repeat Simple_repeat 1 142 0 2 639 284 202 56 0 chr12 7165753 7165842 -114091688 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 639 43 35 0 0 chr12 7165847 7165904 -114091626 + AT_rich Low_complexity Low_complexity 1 57 0 2 639 26 0 0 0 chr12 7166036 7166062 -114091468 + AT_rich Low_complexity Low_complexity 1 26 0 2 639 24 0 0 0 chr12 7166163 7166187 -114091343 + AT_rich Low_complexity Low_complexity 1 24 0 2 639 279 0 0 0 chr12 7166394 7166425 -114091105 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 639 200 79 53 0 chr12 7167806 7167844 -114089686 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 639 913 216 36 9 chr12 7168204 7168424 -114089106 + URR1A DNA MER1_type 1 226 0 2 639 261 241 75 12 chr12 7169047 7169127 -114088403 + MER31A LTR ERV1 189 273 -212 2 639 1237 163 22 5 chr12 7169224 7169446 -114088084 - URR1A DNA MER1_type 0 226 1 2 639 3031 66 13 0 chr12 7169851 7170246 -114087284 + MTB LTR MaLR 1 400 0 2 639 356 194 19 0 chr12 7170657 7170760 -114086770 + (CATA)n Simple_repeat Simple_repeat 2 106 0 2 639 1904 239 31 25 chr12 7171353 7171869 -114085661 + Lx9 LINE L1 6624 7142 -502 2 639 261 264 91 0 chr12 7171884 7172005 -114085525 - L1MC LINE L1 -512 5832 5701 2 639 416 200 17 76 chr12 7172130 7172249 -114085281 - Lx5 LINE L1 -182 6868 6757 2 639 21 0 0 0 chr12 7172456 7172477 -114085053 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 5547 212 60 25 chr12 7172477 7173853 -114083677 - Lx5 LINE L1 0 7050 5627 2 639 442 405 73 38 chr12 7173853 7174225 -114083305 - MLT1E1A LTR MaLR -8 672 288 2 639 1589 203 222 3 chr12 7175493 7175854 -114081676 + MT2A LTR ERVL 1 440 -93 2 639 462 274 11 0 chr12 7175861 7175956 -114081574 - RSINE1 SINE B4 -61 104 9 2 639 351 65 0 0 chr12 7175988 7176034 -114081496 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 639 343 384 87 8 chr12 7176047 7176173 -114081357 + B4A SINE B4 48 183 -109 2 639 396 0 0 0 chr12 7176197 7176241 -114081289 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 639 575 281 49 25 chr12 7176548 7176752 -114080778 + B3 SINE B2 5 213 -3 2 639 4008 127 31 63 chr12 7176844 7177620 -114079910 - RMER17A LTR ERVK 0 751 1 2 639 309 26 0 0 chr12 7177661 7177699 -114079831 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 639 23 0 0 0 chr12 7179283 7179306 -114078224 + AT_rich Low_complexity Low_complexity 1 23 0 2 639 582 384 14 0 chr12 7179354 7179573 -114077957 + B4A SINE B4 1 222 -70 2 639 459 0 0 0 chr12 7179600 7179651 -114077879 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 639 24 0 0 0 chr12 7180257 7180281 -114077249 + AT_rich Low_complexity Low_complexity 1 24 0 2 639 596 246 0 74 chr12 7181331 7181462 -114076068 - B1F SINE Alu 0 149 26 2 639 608 293 122 63 chr12 7181462 7181734 -114075796 - MTD LTR MaLR 0 419 118 2 639 825 40 0 0 chr12 7181734 7181835 -114075695 + (CA)n Simple_repeat Simple_repeat 1 101 0 2 639 608 293 122 63 chr12 7181835 7181956 -114075574 - MTD LTR MaLR -302 117 3 2 639 596 246 0 74 chr12 7181956 7181973 -114075557 - B1F SINE Alu -124 25 12 2 639 223 359 43 0 chr12 7181998 7182090 -114075440 - MIRc SINE MIR -167 101 6 2 639 315 0 0 0 chr12 7182704 7182739 -114074791 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 639 993 61 61 0 chr12 7182739 7182870 -114074660 - B1_Mus1 SINE Alu -9 139 1 2 639 396 0 0 0 chr12 7183546 7183590 -114073940 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 639 324 0 0 0 chr12 7183590 7183625 -114073905 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 639 450 0 0 0 chr12 7183625 7183674 -114073856 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 639 1841 98 16 33 chr12 7183722 7184028 -114073502 - Lx3_Mus LINE L1 -795 6214 5914 2 639 555 54 54 0 chr12 7184079 7184172 -114073358 + L1Md_F2 LINE L1 6483 6580 -2 2 639 3849 106 33 24 chr12 7184189 7184826 -114072704 + L1_Mur1 LINE L1 5149 5791 -95 2 639 316 292 79 70 chr12 7184896 7185010 -114072520 - B4A SINE B4 -157 135 21 2 639 3004 86 2 5 chr12 7185010 7185432 -114072098 - BGLII LTR ERVK 0 421 1 2 639 30221 96 26 5 chr12 7185815 7191909 -114065621 - L1Md_F2 LINE L1 0 6582 360 2 639 361 325 99 42 chr12 7191984 7192289 -114065241 + MLT1B LTR MaLR 67 404 -4 2 639 186 43 0 0 chr12 7192382 7192405 -114065125 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 2 639 261 198 45 23 chr12 7192559 7192647 -114064883 + T-rich Low_complexity Low_complexity 3 92 0 2 639 222 339 15 0 chr12 7194320 7194385 -114063145 - MER5A DNA MER1_type -59 130 65 2 639 7123 139 41 3 chr12 7194393 7196377 -114061153 + Lx LINE L1 4605 6649 -5 2 639 429 20 0 0 chr12 7197336 7197386 -114060144 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 639 345 333 62 48 chr12 7198329 7198537 -114058993 - MLT1A1 LTR MaLR -197 211 1 2 639 198 0 0 0 chr12 7199254 7199276 -114058254 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 2 639 2063 127 31 8 chr12 7200301 7200652 -114056878 - RLTR15 LTR ERVK 0 359 1 2 639 206 350 26 35 chr12 7200875 7200983 -114056547 - L2c LINE L2 -36 3339 3246 2 639 21 36 0 0 chr12 7201742 7201770 -114055760 + AT_rich Low_complexity Low_complexity 1 28 0 2 639 427 273 63 51 chr12 7202117 7202275 -114055255 - MLT1A1 LTR MaLR 0 408 249 2 639 646 186 109 11 chr12 7202284 7202328 -114055202 - RMER12B LTR ERVK -246 1158 1117 2 639 252 0 0 0 chr12 7202328 7202356 -114055174 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 639 646 186 109 11 chr12 7202356 7202485 -114055045 - RMER12B LTR ERVK -288 1116 969 2 639 3418 96 20 6 chr12 7202510 7203005 -114054525 - Lx3_Mus LINE L1 -8 7001 6500 2 639 587 58 23 0 chr12 7203005 7203092 -114054438 + Lx3_Mus LINE L1 6402 6490 -519 2 639 651 286 48 53 chr12 7203138 7203345 -114054185 - MLT1A1 LTR MaLR -195 213 8 2 639 294 98 0 0 chr12 7203474 7203525 -114054005 + (A)n Simple_repeat Simple_repeat 1 51 0 2 639 424 304 66 37 chr12 7203802 7204014 -114053516 + MIRb SINE MIR 2 215 -47 2 639 289 289 128 40 chr12 7204286 7204434 -114053096 - MLT1A0 LTR MaLR -157 208 48 2 639 356 336 78 70 chr12 7204445 7204573 -114052957 + RSINE1 SINE B4 1 129 -36 2 639 394 210 17 0 chr12 7204611 7204730 -114052800 + CT-rich Low_complexity Low_complexity 1 121 0 2 639 457 188 14 28 chr12 7206247 7206389 -114051141 + CT-rich Low_complexity Low_complexity 3 142 0 2 639 332 351 0 0 chr12 7206445 7206539 -114050991 - PB1D10 SINE Alu -5 112 19 2 639 424 258 45 4 chr12 7206977 7207110 -114050420 - B1F2 SINE Alu -4 145 8 2 639 413 274 69 36 chr12 7207169 7207529 -114050001 - L1M5 LINE L1 -1951 4195 3824 2 640 695 313 6 6 chr12 7209937 7210120 -114047410 + MTEb LTR MaLR 1 183 -196 2 640 207 0 0 0 chr12 7210120 7210143 -114047387 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2 640 222 128 0 0 chr12 7210159 7210198 -114047332 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 640 385 245 213 2 chr12 7210214 7210378 -114047152 + MTEb LTR MaLR 158 375 -4 2 640 255 214 66 79 chr12 7211872 7211948 -114045582 + MTEa LTR MaLR 299 373 -6 2 640 1019 60 67 0 chr12 7212079 7212213 -114045317 + B1_Mus1 SINE Alu 1 143 -5 2 640 294 87 0 0 chr12 7212213 7212259 -114045271 + (CAAAC)n Simple_repeat Simple_repeat 4 49 0 2 640 748 293 80 25 chr12 7212265 7212503 -114045027 - ORR1E LTR MaLR -89 290 9 2 640 568 258 87 58 chr12 7212610 7212816 -114044714 + B3 SINE B2 5 216 0 2 640 194 393 28 35 chr12 7212847 7212992 -114044538 - MIRb SINE MIR -124 144 1 2 640 207 69 0 0 chr12 7214495 7214524 -114043006 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 2 640 298 226 67 19 chr12 7215657 7215761 -114041769 + L1MC1 LINE L1 6110 6218 -115 2 640 264 200 0 0 chr12 7215839 7215894 -114041636 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 640 311 141 16 0 chr12 7215891 7215955 -114041575 + (CATA)n Simple_repeat Simple_repeat 2 66 0 2 640 405 70 0 0 chr12 7215956 7216013 -114041517 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 640 411 308 86 64 chr12 7216668 7216904 -114040626 - MLT1A LTR MaLR -137 253 18 2 640 462 18 0 0 chr12 7216962 7217017 -114040513 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 640 22 0 0 0 chr12 7217197 7217219 -114040311 + AT_rich Low_complexity Low_complexity 1 22 0 3 640 27 0 0 0 chr12 7217468 7217495 -114040035 + AT_rich Low_complexity Low_complexity 1 27 0 3 640 564 29 0 0 chr12 7217521 7217591 -114039939 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 640 422 350 0 0 chr12 7217594 7217711 -114039819 - RSINE1 SINE B4 -43 122 6 3 640 411 119 0 0 chr12 7218211 7218278 -114039252 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 640 35 24 0 0 chr12 7218460 7218502 -114039028 + AT_rich Low_complexity Low_complexity 1 42 0 3 640 516 16 0 0 chr12 7219343 7219404 -114038126 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 640 632 322 57 8 chr12 7220756 7221003 -114036527 - MT2A LTR ERVL 0 533 275 3 640 2330 224 12 10 chr12 7221056 7221566 -114035964 - Lx5 LINE L1 -224 6826 6316 3 640 758 206 6 0 chr12 7221564 7221729 -114035801 + Lx5 LINE L1 6841 7006 -44 3 640 1094 86 0 0 chr12 7221849 7222001 -114035529 + L1_Mus2 LINE L1 6415 6566 0 3 640 180 0 0 0 chr12 7223145 7223165 -114034365 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 640 22 35 0 0 chr12 7223721 7223750 -114033780 + AT_rich Low_complexity Low_complexity 1 29 0 3 640 276 347 0 0 chr12 7226248 7226346 -114031184 + (CATATA)n Simple_repeat Simple_repeat 5 102 0 3 640 1212 41 0 0 chr12 7227090 7227236 -114030294 - B1_Mus2 SINE Alu 0 147 2 3 640 4019 47 2 0 chr12 7227258 7227752 -114029778 - L1Md_F2 LINE L1 0 6582 6088 3 640 3616 115 19 12 chr12 7227819 7228389 -114029141 - Lx2 LINE L1 0 6997 6424 3 640 1338 121 0 5 chr12 7228389 7228588 -114028942 + Lx2 LINE L1 6204 6401 -596 3 640 6545 111 1 21 chr12 7228586 7229581 -114027949 - L1_Mus1 LINE L1 -429 5454 4480 3 640 7604 77 4 0 chr12 7229581 7230683 -114026847 + L1_Mus1 LINE L1 5463 6567 0 3 640 240 83 0 0 chr12 7230691 7230727 -114026803 + Lx2 LINE L1 6387 6422 -575 3 640 24 85 0 0 chr12 7230727 7230786 -114026744 + AT_rich Low_complexity Low_complexity 1 59 0 3 640 33 43 0 0 chr12 7231470 7231517 -114026013 + AT_rich Low_complexity Low_complexity 1 47 0 3 640 206 105 0 50 chr12 7231565 7231605 -114025925 + T-rich Low_complexity Low_complexity 4 41 0 3 640 373 319 11 0 chr12 7231692 7231783 -114025747 + RSINE1 SINE B4 4 95 -70 3 640 276 133 0 0 chr12 7231858 7231918 -114025612 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 640 2922 29 3 0 chr12 7232191 7232536 -114024994 - ORR1A0 LTR MaLR 0 346 1 3 640 990 179 14 19 chr12 7232564 7232780 -114024750 + Lx7 LINE L1 7482 7696 0 3 640 319 285 30 82 chr12 7232881 7233015 -114024515 - HAL1 LINE L1 -1486 1021 895 3 640 262 196 21 0 chr12 7234055 7234152 -114023378 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 640 182 367 42 61 chr12 7235159 7235371 -114022159 + L2c LINE L2 3115 3322 -65 3 640 1119 83 0 0 chr12 7236770 7236915 -114020615 + B1_Mus1 SINE Alu 1 145 -3 3 640 212 0 36 0 chr12 7236925 7236953 -114020577 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 640 261 274 48 0 chr12 7237337 7237399 -114020131 - LTR33C LTR ERVL -517 112 48 3 640 256 305 0 0 chr12 7237867 7237926 -114019604 + polypyrimidine Low_complexity Low_complexity 1 59 0 3 640 185 191 45 45 chr12 7238496 7238562 -114018968 + L3 LINE CR1 2540 2605 -1884 3 640 231 61 0 0 chr12 7239157 7239190 -114018340 + (T)n Simple_repeat Simple_repeat 1 33 0 3 640 25 0 0 0 chr12 7239262 7239287 -114018243 + AT_rich Low_complexity Low_complexity 1 25 0 3 640 237 196 0 0 chr12 7240672 7240723 -114016807 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 640 22 0 0 0 chr12 7242528 7242550 -114014980 + AT_rich Low_complexity Low_complexity 1 22 0 3 640 956 87 72 7 chr12 7243082 7243221 -114014309 + B1_Mus1 SINE Alu 1 148 0 3 640 283 94 47 0 chr12 7243234 7243298 -114014232 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 3 640 702 202 45 18 chr12 7244203 7244393 -114013137 - URR1B DNA MER1_type -3 222 10 3 640 398 256 28 53 chr12 7244795 7244926 -114012604 + PB1D10 SINE Alu 6 132 -18 3 640 580 281 88 29 chr12 7246733 7246938 -114010592 + MER2 DNA MER2_type 124 340 -5 3 640 675 286 17 0 chr12 7248288 7248466 -114009064 - B3 SINE B2 -8 208 28 3 640 428 344 90 67 chr12 7249579 7249847 -114007683 + B4 SINE B4 1 274 -18 3 640 333 0 0 0 chr12 7249867 7249904 -114007626 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 640 2725 167 64 10 chr12 7250005 7250518 -114007012 - MTC-int LTR MaLR -715 543 3 3 640 1958 167 98 13 chr12 7250518 7250906 -114006624 - MTC LTR MaLR 0 421 1 3 640 626 275 14 32 chr12 7251182 7251400 -114006130 + MER67C LTR ERV1 3 216 -495 3 640 653 290 153 41 chr12 7251478 7251798 -114005732 + MTE2b LTR MaLR 1 356 -23 3 640 1062 269 65 50 chr12 7251955 7252338 -114005192 + MER67C LTR ERV1 323 711 0 3 640 30 27 0 0 chr12 7252529 7252566 -114004964 + AT_rich Low_complexity Low_complexity 1 37 0 3 640 260 241 0 65 chr12 7252617 7252679 -114004851 + RSINE1 SINE B4 108 165 0 3 640 471 168 0 0 chr12 7252679 7252774 -114004756 + (CA)n Simple_repeat Simple_repeat 1 95 0 3 640 22 35 0 0 chr12 7252886 7252915 -114004615 + AT_rich Low_complexity Low_complexity 1 29 0 3 640 2016 56 0 0 chr12 7252915 7253165 -114004365 - L1Md_T LINE L1 0 6582 6333 3 640 252 143 0 0 chr12 7253165 7253207 -114004323 + L1Md_A LINE L1 6040 6081 -501 3 640 23 33 0 0 chr12 7253207 7253237 -114004293 + AT_rich Low_complexity Low_complexity 1 30 0 3 640 515 254 60 70 chr12 7253521 7253720 -114003810 - B3A SINE B2 0 198 2 3 640 251 141 0 15 chr12 7254423 7254488 -114003042 + GA-rich Low_complexity Low_complexity 1 64 0 3 640 681 247 76 0 chr12 7254496 7254654 -114002876 - B3A SINE B2 -28 170 1 3 640 365 321 41 26 chr12 7254678 7254873 -114002657 - B3A SINE B2 0 198 1 3 640 180 97 0 0 chr12 7254895 7254926 -114002604 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 3 640 227 56 56 0 chr12 7255085 7255121 -114002409 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3 640 635 22 21 21 chr12 7256633 7256728 -114000802 + (CA)n Simple_repeat Simple_repeat 2 96 0 3 640 266 318 16 106 chr12 7256948 7257071 -114000459 + PB1D7 SINE Alu 1 112 -8 3 640 395 203 0 51 chr12 7257089 7257167 -114000363 + ID4 SINE ID 2 75 -8 3 640 288 77 0 0 chr12 7258221 7258260 -113999270 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 3 640 432 246 45 37 chr12 7258632 7258763 -113998767 + MLT1A0 LTR MaLR 211 350 -40 3 640 212 0 36 0 chr12 7259893 7259921 -113997609 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 640 279 359 53 15 chr12 7261708 7261841 -113995689 - RMER12 LTR ERVK -474 848 711 3 640 262 283 16 165 chr12 7261748 7261875 -113995655 - B4A SINE B4 0 292 185 3 640 1371 24 0 0 chr12 7262352 7262519 -113995011 + (CA)n Simple_repeat Simple_repeat 2 168 0 3 640 26 50 0 0 chr12 7262965 7263005 -113994525 + AT_rich Low_complexity Low_complexity 1 40 0 3 640 7468 67 2 24 chr12 7263294 7264310 -113993220 - L1Md_F2 LINE L1 -1 6581 5588 3 640 387 0 0 0 chr12 7265161 7265204 -113992326 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 640 398 303 131 0 chr12 7265225 7265347 -113992183 - RSINE1 SINE B4 -24 141 4 3 640 23 68 0 0 chr12 7265358 7265402 -113992128 + AT_rich Low_complexity Low_complexity 1 44 0 3 640 207 0 0 0 chr12 7265957 7265980 -113991550 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 640 518 299 34 37 chr12 7266004 7266173 -113991357 + B3A SINE B2 34 201 -15 3 640 192 40 0 0 chr12 7266179 7266204 -113991326 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 640 230 148 115 0 chr12 7266233 7266294 -113991236 + Lx5 LINE L1 6982 7049 -1 3 640 297 0 0 0 chr12 7266671 7266704 -113990826 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 640 367 306 181 25 chr12 7268555 7268870 -113988660 + MLT1H2 LTR MaLR 91 454 -35 3 640 1365 329 84 65 chr12 7268878 7269809 -113987721 + MLT1H2-int LTR MaLR 1 948 -461 3 640 252 0 0 0 chr12 7270031 7270059 -113987471 + (A)n Simple_repeat Simple_repeat 1 28 0 3 640 675 210 6 11 chr12 7270318 7270496 -113987034 + GA-rich Low_complexity Low_complexity 2 178 0 3 640 282 179 0 0 chr12 7270709 7270765 -113986765 + CT-rich Low_complexity Low_complexity 2 57 0 3 640 457 367 14 8 chr12 7271051 7271255 -113986275 + B4 SINE B4 2 207 -85 3 640 264 59 0 0 chr12 7271256 7271290 -113986240 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 640 1185 120 5 15 chr12 7271480 7271675 -113985855 + B2_Mm2 SINE B2 2 194 -1 3 640 1074 140 0 0 chr12 7271677 7271856 -113985674 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 3 640 1044 337 66 27 chr12 7271945 7272074 -113985456 + Charlie24 DNA MER1_type 1237 1367 -1083 3 640 1055 101 0 6 chr12 7272074 7272234 -113985296 + (GAA)n Simple_repeat Simple_repeat 3 161 0 3 640 1044 337 66 27 chr12 7272234 7272620 -113984910 + Charlie24 DNA MER1_type 1368 1772 -678 3 640 279 369 0 0 chr12 7272704 7272769 -113984761 + B4A SINE B4 33 97 -195 3 640 244 217 152 25 chr12 7272935 7273053 -113984477 - Lx9 LINE L1 -16 7628 7496 3 640 226 311 0 0 chr12 7273195 7273269 -113984261 + A-rich Low_complexity Low_complexity 1 74 0 3 640 208 307 39 19 chr12 7273288 7273391 -113984139 - MIRb SINE MIR -52 216 112 3 640 243 79 0 0 chr12 7273589 7273627 -113983903 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 3 640 278 333 10 40 chr12 7273637 7273737 -113983793 - PB1D10 SINE Alu -20 97 1 3 640 822 283 19 5 chr12 7274206 7274412 -113983118 + B3 SINE B2 8 216 0 3 640 296 287 70 82 chr12 7274648 7275004 -113982526 - L1MC5 LINE L1 -99 7862 7511 3 640 963 274 64 23 chr12 7275074 7275463 -113982067 - L1M5 LINE L1 -320 5804 5400 3 640 468 0 0 0 chr12 7275824 7275876 -113981654 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 640 324 0 0 0 chr12 7275877 7275913 -113981617 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 640 351 255 10 0 chr12 7275917 7276019 -113981511 + CT-rich Low_complexity Low_complexity 1 103 0 4 640 239 359 0 0 chr12 7276283 7276361 -113981169 - L3 LINE CR1 -1023 3466 3389 4 640 223 323 74 83 chr12 7276846 7276954 -113980576 - B3 SINE B2 -34 182 76 4 640 340 381 21 14 chr12 7276953 7277094 -113980436 + B4A SINE B4 151 292 0 4 640 343 292 38 8 chr12 7277191 7277322 -113980208 - B1F1 SINE Alu -10 139 5 4 640 217 49 47 47 chr12 7277395 7277438 -113980092 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 4 640 465 34 0 0 chr12 7277457 7277516 -113980014 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 640 346 317 113 40 chr12 7277539 7277690 -113979840 - B4A SINE B4 -55 237 76 4 640 21 0 0 0 chr12 7278210 7278231 -113979299 + AT_rich Low_complexity Low_complexity 1 21 0 4 640 560 142 9 9 chr12 7278620 7278727 -113978803 + Lx LINE L1 6542 6648 -6 4 640 1238 85 6 0 chr12 7279212 7279389 -113978141 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 640 25 31 0 0 chr12 7279524 7279556 -113977974 + AT_rich Low_complexity Low_complexity 1 32 0 4 640 31716 77 3 6 chr12 7279563 7281419 -113976111 - L1Md_F2 LINE L1 -12 6570 4732 4 640 306 0 0 0 chr12 7281419 7281453 -113976077 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 640 31716 83 6 9 chr12 7281453 7282692 -113974838 - L1Md_F2 LINE L1 -1152 4731 3488 4 640 246 32 0 0 chr12 7282692 7282723 -113974807 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 640 31716 128 36 30 chr12 7282723 7286167 -113971363 - L1Md_F2 LINE L1 -2396 3487 217 4 640 7615 96 2 10 chr12 7286272 7288184 -113969346 - L1_Mus1 LINE L1 0 6567 4672 4 640 338 318 126 8 chr12 7288801 7288928 -113968602 + B1_Mur2 SINE Alu 1 142 -7 4 640 262 360 70 21 chr12 7288928 7288941 -113968589 + B4A SINE B4 86 232 -60 4 640 378 0 0 0 chr12 7289759 7289801 -113967729 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 640 636 150 22 34 chr12 7290960 7291139 -113966391 + CT-rich Low_complexity Low_complexity 3 179 0 4 640 208 143 29 0 chr12 7291141 7291176 -113966354 + C-rich Low_complexity Low_complexity 4 39 0 4 640 213 274 53 27 chr12 7291186 7291261 -113966269 + L3 LINE CR1 4400 4476 -13 4 640 771 221 7 7 chr12 7291903 7292049 -113965481 + B1_Mur4 SINE Alu 1 146 -4 4 640 28 0 0 0 chr12 7292366 7292394 -113965136 + AT_rich Low_complexity Low_complexity 1 28 0 4 640 2931 57 3 0 chr12 7293358 7293726 -113963804 - L1Md_T LINE L1 0 6582 6214 4 640 216 235 48 24 chr12 7295707 7295790 -113961740 + (TCTCTG)n Simple_repeat Simple_repeat 6 90 0 4 640 495 0 0 0 chr12 7295795 7295850 -113961680 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 640 182 385 0 11 chr12 7296893 7296985 -113960545 + L2c LINE L2 3237 3327 -60 4 640 789 246 36 31 chr12 7297061 7297082 -113960448 - B3A SINE B2 0 198 179 4 640 582 28 0 0 chr12 7297082 7297154 -113960376 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 640 789 246 36 31 chr12 7297154 7297325 -113960205 - B3A SINE B2 -20 178 5 4 640 247 350 80 0 chr12 7297476 7297576 -113959954 + PB1D7 SINE Alu 5 112 -8 4 640 280 381 34 0 chr12 7299231 7299378 -113958152 - MIR SINE MIR -94 168 17 4 640 330 26 0 0 chr12 7299617 7299656 -113957874 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 640 2135 125 25 0 chr12 7299680 7299999 -113957531 + ORR1A2 LTR MaLR 1 327 0 4 640 231 445 15 15 chr12 7300176 7300313 -113957217 + LTR16E2 LTR ERVL 239 375 -193 4 640 1140 76 7 0 chr12 7300318 7300463 -113957067 + B1_Mus2 SINE Alu 1 146 -1 4 640 3106 47 39 0 chr12 7300721 7301102 -113956428 + MTA_Mm LTR MaLR 1 396 0 4 640 2417 107 95 44 chr12 7301377 7301829 -113955701 + IAPLTR2_Mm LTR ERVK 1 475 0 4 640 258 32 0 0 chr12 7303269 7303300 -113954230 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 640 319 326 100 88 chr12 7303771 7304171 -113953359 + MLT1A1 LTR MaLR 4 408 0 4 640 445 329 120 21 chr12 7305437 7305679 -113951851 + LTR33 LTR ERVL 38 303 -212 4 640 1106 44 7 0 chr12 7306074 7306210 -113951320 + B1_Mus2 SINE Alu 1 137 -10 4 640 286 321 83 0 chr12 7307347 7307456 -113950074 + Lx8 LINE L1 7062 7179 -294 4 640 3031 58 0 0 chr12 7307479 7307876 -113949654 - L1_Mus1 LINE L1 -584 5983 5587 4 640 4305 82 7 2 chr12 7307876 7308462 -113949068 + L1_Mus1 LINE L1 5979 6567 0 4 640 278 258 20 49 chr12 7308610 7308712 -113948818 + Lx8 LINE L1 7369 7467 -6 4 640 400 358 131 61 chr12 7308907 7309267 -113948263 + MLT1A1 LTR MaLR 21 405 -3 4 640 403 197 99 6 chr12 7309656 7309762 -113947768 + B1F2 SINE Alu 33 143 -6 4 640 206 250 0 16 chr12 7309762 7309823 -113947707 + GA-rich Low_complexity Low_complexity 1 60 0 4 640 429 301 168 29 chr12 7310388 7310817 -113946713 + L1M4 LINE L1 2469 2934 -3212 4 640 22 0 0 0 chr12 7311707 7311729 -113945801 + AT_rich Low_complexity Low_complexity 1 22 0 4 640 1357 200 205 40 chr12 7312103 7312614 -113944916 + RMER20B LTR ERVK 33 627 0 4 640 243 0 0 0 chr12 7312652 7312679 -113944851 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 4 640 1392 269 40 56 chr12 7312684 7313013 -113944517 - Lx6 LINE L1 -169 7291 6976 4 640 270 0 0 0 chr12 7313013 7313043 -113944487 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 640 1392 269 40 56 chr12 7313043 7313213 -113944317 - Lx6 LINE L1 -485 6975 6800 4 640 192 240 22 157 chr12 7313999 7314088 -113943442 + L2a LINE L2 3105 3181 -245 4 640 252 245 205 6 chr12 7314149 7314206 -113943324 + Lx9 LINE L1 7425 7484 -160 4 640 462 79 0 0 chr12 7314206 7314269 -113943261 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 640 252 245 205 6 chr12 7314269 7314367 -113943163 + Lx9 LINE L1 7485 7611 -33 4 640 22 35 0 0 chr12 7314547 7314576 -113942954 + AT_rich Low_complexity Low_complexity 1 29 0 4 640 1683 21 0 0 chr12 7315755 7315944 -113941586 + B2_Mm1a SINE B2 2 190 -3 4 640 688 99 18 0 chr12 7316220 7316331 -113941199 + (TA)n Simple_repeat Simple_repeat 2 114 0 4 640 260 340 27 36 chr12 7316522 7316632 -113940898 + MIRb SINE MIR 86 194 -74 4 640 231 0 77 0 chr12 7317202 7317241 -113940289 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 640 285 220 154 9 chr12 7317276 7317386 -113940144 - L1M4 LINE L1 -300 5874 5749 4 640 234 151 0 36 chr12 7319265 7319320 -113938210 + T-rich Low_complexity Low_complexity 1 53 0 4 640 1558 61 12 80 chr12 7319613 7319864 -113937666 - L1_Mus2 LINE L1 0 6566 6333 4 640 2200 139 100 37 chr12 7319864 7320245 -113937285 + RLTR44A LTR ERVK 1 405 0 4 640 734 76 0 9 chr12 7320308 7320414 -113937116 + RLTR44-int LTR ERVK 877 981 -1831 4 640 6537 167 76 61 chr12 7320593 7322406 -113935124 + RLTR44-int LTR ERVK 973 2812 0 4 640 2325 124 63 40 chr12 7322406 7322802 -113934728 + RLTR44A LTR ERVK 1 405 0 4 640 2267 65 13 0 chr12 7322802 7323108 -113934422 - L1_Mus2 LINE L1 -228 6338 6029 4 640 408 320 136 65 chr12 7324037 7324221 -113933309 - B3A SINE B2 0 198 2 4 640 6297 56 92 0 chr12 7324327 7325152 -113932378 + L1Md_F2 LINE L1 5670 6570 -12 4 640 400 316 72 54 chr12 7326040 7326318 -113931212 - LTR52 LTR ERVL -54 367 85 4 640 1231 167 33 0 chr12 7326369 7326579 -113930951 + URR1B DNA MER1_type 9 225 0 4 640 22 0 0 0 chr12 7327276 7327298 -113930232 + AT_rich Low_complexity Low_complexity 1 22 0 4 640 21 0 0 0 chr12 7327332 7327353 -113930177 + AT_rich Low_complexity Low_complexity 1 21 0 4 640 578 34 45 0 chr12 7327563 7327652 -113929878 + (GA)n Simple_repeat Simple_repeat 2 94 0 4 640 242 354 59 52 chr12 7328067 7328374 -113929156 - L2 LINE L2 -1757 1662 1354 4 640 464 111 12 0 chr12 7329151 7329232 -113928298 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 640 294 29 0 0 chr12 7329233 7329268 -113928262 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 640 442 382 14 0 chr12 7329274 7329418 -113928112 - RSINE1 SINE B4 -17 148 3 4 640 266 343 18 37 chr12 7329964 7330073 -113927457 - LTR16A LTR ERVL -5 451 345 4 640 388 407 7 7 chr12 7330112 7330253 -113927277 - LTR16A LTR ERVL -190 261 121 4 640 507 189 198 0 chr12 7330999 7331110 -113926420 + B1_Mur4 SINE Alu 3 135 -15 4 640 969 61 27 7 chr12 7331113 7331262 -113926268 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 4 640 611 85 0 21 chr12 7331277 7331373 -113926157 + (GGAA)n Simple_repeat Simple_repeat 1 94 0 4 640 248 186 17 0 chr12 7331388 7331447 -113926083 + G-rich Low_complexity Low_complexity 2 61 0 4 640 209 171 49 0 chr12 7333744 7333785 -113923745 - L3 LINE CR1 -197 4292 4250 4 640 418 356 78 19 chr12 7335540 7335809 -113921721 + L3 LINE CR1 3532 3816 -673 4 640 417 20 0 0 chr12 7336399 7336449 -113921081 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 640 273 57 0 0 chr12 7336685 7336720 -113920810 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 4 640 3266 192 39 28 chr12 7337852 7338601 -113918929 - Lx4B LINE L1 -7 7051 6295 4 640 246 348 0 0 chr12 7339438 7339507 -113918023 + ID4_ SINE ID 2 70 -13 4 640 423 0 0 0 chr12 7339508 7339555 -113917975 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 641 216 0 0 0 chr12 7341256 7341280 -113916250 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 641 180 267 113 32 chr12 7341407 7341469 -113916061 + MIR SINE MIR 117 183 -79 4 641 557 303 64 45 chr12 7341478 7341789 -113915741 + L1MB8 LINE L1 5623 5939 -239 4 641 500 340 70 64 chr12 7342448 7343007 -113914523 + ERVL-E-int LTR ERVL 1297 1858 -3809 4 641 277 297 136 11 chr12 7343391 7343575 -113913955 + ERVL-E-int LTR ERVL 2372 2578 -3136 4 641 283 348 99 28 chr12 7343809 7344022 -113913508 + MIR SINE MIR 32 259 -3 4 641 945 331 45 24 chr12 7344078 7344710 -113912820 + ERVL-E-int LTR ERVL 2835 3440 -2274 4 641 274 319 14 28 chr12 7344785 7344927 -113912603 + ERVL-E-int LTR ERVL 4464 4631 -1126 4 641 342 332 89 15 chr12 7344954 7345223 -113912307 - ERVL-E-int LTR ERVL -2557 3110 2822 4 641 1682 317 67 23 chr12 7345251 7346023 -113911507 + Lx8 LINE L1 6421 7226 -247 4 641 564 309 150 13 chr12 7346187 7346659 -113910871 - L1M4c LINE L1 -1513 4863 4327 4 641 660 295 14 77 chr12 7346664 7346873 -113910657 + B3A SINE B2 3 198 0 4 641 396 333 48 7 chr12 7346918 7347211 -113910319 - L1M4c LINE L1 -2132 4244 3940 4 641 986 281 92 27 chr12 7347225 7347939 -113909591 - L1M4c LINE L1 -2356 4026 3270 4 641 385 292 113 52 chr12 7347941 7348639 -113908891 - L1M4c LINE L1 -3476 2900 2161 4 641 831 294 75 44 chr12 7349165 7349571 -113907959 - MTE2a LTR MaLR -1 418 8 4 641 756 133 88 7 chr12 7349577 7349713 -113907817 + B1_Mm SINE Alu 1 147 0 5 641 1469 198 34 34 chr12 7350047 7350133 -113907397 + L1_Mur2 LINE L1 933 1018 -6068 5 641 2598 99 44 3 chr12 7350133 7350517 -113907013 - MTB LTR MaLR 0 400 1 5 641 20351 166 34 21 chr12 7350517 7352502 -113905028 + L1_Mur2 LINE L1 1019 3033 -2844 5 641 2853 89 2 49 chr12 7352502 7352929 -113904601 - MTB_Mm LTR MaLR 0 407 1 5 641 20351 163 34 20 chr12 7352929 7354598 -113902932 + L1_Mur2 LINE L1 3034 4731 -1146 5 641 369 0 0 0 chr12 7354598 7354639 -113902891 + (GAA)n Simple_repeat Simple_repeat 2 42 0 5 641 20351 163 34 20 chr12 7354639 7355448 -113902082 + L1_Mur2 LINE L1 4732 5550 -327 5 641 2544 189 29 15 chr12 7355446 7356058 -113901472 + Lx5 LINE L1 6400 7058 0 5 641 251 85 0 21 chr12 7356126 7356174 -113901356 + (TTTTTA)n Simple_repeat Simple_repeat 2 48 0 5 641 1140 82 0 0 chr12 7356176 7356322 -113901208 - B1_Mus1 SINE Alu 0 148 3 5 641 738 336 53 81 chr12 7357248 7357704 -113899826 + MLT2F LTR ERVL 207 649 -14 5 641 1786 204 14 68 chr12 7357828 7358035 -113899495 + RMER10B LTR ERVL 6 197 -201 5 641 1352 12 0 12 chr12 7358035 7358198 -113899332 + (TCTCCC)n Simple_repeat Simple_repeat 3 163 0 5 641 1786 204 14 68 chr12 7358198 7358405 -113899125 + RMER10B LTR ERVL 198 398 0 5 641 743 270 102 73 chr12 7358540 7358911 -113898619 - RLTR14 LTR ERV1 0 382 1 5 641 1829 196 2 30 chr12 7359108 7359493 -113898037 + ORR1B2 LTR MaLR 9 378 0 5 641 22 35 0 0 chr12 7359766 7359795 -113897735 + AT_rich Low_complexity Low_complexity 1 29 0 5 641 982 108 58 0 chr12 7359859 7359998 -113897532 + B1_Mus1 SINE Alu 2 148 0 5 641 378 340 103 14 chr12 7360025 7360171 -113897359 - RSINE1 SINE B4 -3 162 4 5 641 1368 161 58 0 chr12 7360807 7361049 -113896481 - Lx2A1 LINE L1 -5 7003 6748 5 641 2302 167 11 21 chr12 7361049 7361484 -113896046 + Lx2B LINE L1 6330 6760 -240 5 641 456 233 78 0 chr12 7362259 7362362 -113895168 + PB1D9 SINE Alu 9 119 -1 5 641 829 86 0 15 chr12 7362373 7362503 -113895027 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 5 641 5459 56 29 1 chr12 7362661 7363358 -113894172 + L1Md_F2 LINE L1 5867 6582 0 5 641 5419 78 0 6 chr12 7363438 7364156 -113893374 + L1Md_F2 LINE L1 5857 6570 -12 5 641 407 364 88 7 chr12 7365240 7365536 -113891994 - L3 LINE CR1 -1 4488 4169 5 641 806 299 34 0 chr12 7365870 7366077 -113891453 - ID_B1 SINE B4 -9 215 2 5 641 187 352 62 44 chr12 7366077 7366190 -113891340 + MIRb SINE MIR 27 141 -127 5 641 22 56 0 0 chr12 7366263 7366299 -113891231 + AT_rich Low_complexity Low_complexity 1 36 0 5 641 490 329 70 44 chr12 7366508 7366737 -113890793 - MARNA DNA Mariner -87 499 265 5 641 495 290 8 61 chr12 7367478 7367610 -113889920 + ID_B1 SINE B4 79 203 -21 5 641 633 129 0 0 chr12 7367623 7367739 -113889791 + (GA)n Simple_repeat Simple_repeat 1 116 0 5 641 208 150 0 24 chr12 7367765 7367806 -113889724 + G-rich Low_complexity Low_complexity 5 44 0 5 641 564 198 103 0 chr12 7368264 7368380 -113889150 + B1_Mur2 SINE Alu 5 132 -17 5 641 207 0 0 0 chr12 7368405 7368428 -113889102 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 5 641 203 294 0 0 chr12 7368592 7368643 -113888887 + GA-rich Low_complexity Low_complexity 2 52 0 5 641 1162 264 59 34 chr12 7369695 7370013 -113887517 - MTE2a LTR MaLR 0 419 39 5 641 586 278 0 46 chr12 7370171 7370322 -113887208 + B3 SINE B2 66 209 -7 5 641 449 216 16 31 chr12 7370434 7370563 -113886967 + Lx5 LINE L1 6917 7043 -7 5 641 1058 250 79 38 chr12 7370805 7371266 -113886264 - RMER2 LTR ERV1 -42 525 1 5 641 23 33 0 0 chr12 7371399 7371429 -113886101 + AT_rich Low_complexity Low_complexity 1 30 0 5 641 743 275 40 0 chr12 7371440 7371640 -113885890 + B3 SINE B2 1 208 -8 5 641 1029 89 0 0 chr12 7371795 7371941 -113885589 + (GAAA)n Simple_repeat Simple_repeat 1 146 0 5 641 718 306 0 9 chr12 7374669 7374887 -113882643 - B3 SINE B2 0 216 1 5 641 235 412 91 50 chr12 7376298 7376640 -113880890 - LTR88c LTR Genie? -499 363 8 5 641 1054 272 59 83 chr12 7376864 7377237 -113880293 - MTE2a LTR MaLR 0 379 16 5 641 185 291 179 52 chr12 7377612 7377746 -113879784 - L2b LINE L2 -29 3346 3196 5 641 22 0 0 0 chr12 7378797 7378819 -113878711 + AT_rich Low_complexity Low_complexity 1 22 0 5 641 210 156 0 0 chr12 7379199 7379244 -113878286 + A-rich Low_complexity Low_complexity 1 45 0 5 641 223 28 56 0 chr12 7381136 7381172 -113876358 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 641 225 0 0 0 chr12 7382232 7382257 -113875273 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 641 687 46 0 0 chr12 7382257 7382343 -113875187 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 641 670 324 14 31 chr12 7383125 7383412 -113874118 - B4A SINE B4 -10 282 1 5 641 1124 269 122 27 chr12 7384432 7384811 -113872719 + MTD LTR MaLR 5 402 -17 5 641 971 220 15 24 chr12 7385439 7385644 -113871886 + URR1A DNA MER1_type 17 219 -7 5 641 831 291 52 67 chr12 7385856 7386271 -113871259 - MTE2a LTR MaLR -14 405 1 5 641 263 360 34 0 chr12 7386372 7386461 -113871069 + PB1 SINE Alu 1 92 -35 5 641 211 241 0 36 chr12 7387761 7387817 -113869713 + GA-rich Low_complexity Low_complexity 3 56 0 5 641 443 343 11 4 chr12 7390138 7390285 -113867245 + ID_B1 SINE B4 70 210 -14 5 641 361 298 73 44 chr12 7390164 7390301 -113867229 + B1_Mur1 SINE Alu 9 149 0 5 641 2906 52 0 16 chr12 7390896 7391267 -113866263 - RLTR10B2 LTR ERVK 0 365 1 5 641 222 300 16 16 chr12 7391418 7391479 -113866051 + ID4 SINE ID 22 82 -1 5 641 243 0 0 0 chr12 7391486 7391513 -113866017 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 641 424 390 63 5 chr12 7392192 7392398 -113865132 + MER20 DNA MER1_type 1 218 -1 5 641 988 208 226 19 chr12 7392697 7393006 -113864524 - ORR1D1 LTR MaLR -1 373 1 5 641 2092 201 2 21 chr12 7393135 7393562 -113863968 + MTC LTR MaLR 1 419 -2 5 641 779 191 191 0 chr12 7393845 7394034 -113863496 + URR1B DNA MER1_type 1 225 0 5 641 209 237 98 9 chr12 7394063 7394150 -113863380 - MIRb SINE MIR -62 214 121 5 641 324 0 0 0 chr12 7394731 7394767 -113862763 + (T)n Simple_repeat Simple_repeat 1 36 0 5 641 234 91 0 0 chr12 7394805 7394838 -113862692 + (A)n Simple_repeat Simple_repeat 1 33 0 5 641 27 29 0 0 chr12 7395882 7395916 -113861614 + AT_rich Low_complexity Low_complexity 1 34 0 5 641 250 304 0 0 chr12 7395934 7396003 -113861527 - ID4_ SINE ID -13 70 2 5 641 225 0 0 0 chr12 7396150 7396175 -113861355 + (CCA)n Simple_repeat Simple_repeat 3 27 0 5 641 1135 89 0 0 chr12 7396304 7396450 -113861080 + B1_Mus1 SINE Alu 3 148 0 5 641 771 112 0 0 chr12 7396461 7396577 -113860953 + (GGAA)n Simple_repeat Simple_repeat 4 119 0 5 641 279 0 0 0 chr12 7397332 7397363 -113860167 + (A)n Simple_repeat Simple_repeat 1 31 0 5 641 847 299 173 22 chr12 7397623 7397941 -113859589 + MTE2b LTR MaLR 2 367 -12 5 641 1878 193 129 17 chr12 7398794 7399200 -113858330 + RLTR20B1 LTR ERVK 1 452 -111 5 641 223 33 0 0 chr12 7399200 7399230 -113858300 + B3A SINE B2 2 31 -167 5 641 898 180 17 11 chr12 7399662 7399842 -113857688 + URR1A DNA MER1_type 46 226 0 5 641 28425 114 21 10 chr12 7399865 7406181 -113851349 + L1_Mus1 LINE L1 177 6565 -2 5 641 297 306 113 40 chr12 7406468 7406618 -113850912 - L2a LINE L2 -23 3403 3243 5 641 306 320 0 0 chr12 7406984 7407059 -113850471 + MER63B DNA AcHobo 315 389 -47 5 641 602 316 130 29 chr12 7407712 7407950 -113849580 - B4 SINE B4 0 292 31 5 641 1030 153 143 0 chr12 7408216 7408412 -113849118 - URR1B DNA MER1_type 0 225 2 5 641 1023 32 0 0 chr12 7409177 7409300 -113848230 + (TG)n Simple_repeat Simple_repeat 1 123 0 5 641 389 375 68 23 chr12 7409623 7409844 -113847686 - MLT1A0 LTR MaLR -134 231 1 5 641 21 0 0 0 chr12 7410434 7410455 -113847075 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 11489 54 3 4 chr12 7411283 7413496 -113844034 - L1Md_F2 LINE L1 -3 6579 4366 5 641 558 233 31 78 chr12 7413570 7413761 -113843769 + B3A SINE B2 1 182 -16 5 641 387 319 0 0 chr12 7413761 7413877 -113843653 + (CA)n Simple_repeat Simple_repeat 1 116 0 5 641 26 30 0 0 chr12 7413879 7413912 -113843618 + AT_rich Low_complexity Low_complexity 1 33 0 5 641 245 323 72 65 chr12 7414448 7414587 -113842943 + MTEa LTR MaLR 6 145 -214 5 641 260 333 10 20 chr12 7414730 7414831 -113842699 + MTEa LTR MaLR 276 375 -4 5 641 210 366 37 65 chr12 7415289 7415505 -113842025 + MIRb SINE MIR 26 241 -27 5 641 234 174 0 0 chr12 7416282 7416328 -113841202 + GA-rich Low_complexity Low_complexity 1 46 0 5 641 243 326 86 56 chr12 7416751 7416949 -113840581 + MIRb SINE MIR 59 262 -6 5 641 551 15 0 14 chr12 7417024 7417093 -113840437 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 641 253 361 25 25 chr12 7419345 7419467 -113838063 + MIRc SINE MIR 122 243 -25 5 641 409 338 35 35 chr12 7420856 7420882 -113836648 + B4 SINE B4 64 89 -203 5 641 787 231 0 26 chr12 7420882 7421033 -113836497 + B1_Mur2 SINE Alu 1 147 -2 5 641 240 111 0 0 chr12 7421126 7421162 -113836368 + (TAAAG)n Simple_repeat Simple_repeat 2 37 0 5 641 1301 173 0 4 chr12 7423294 7423520 -113834010 + URR1B DNA MER1_type 1 225 0 5 641 892 223 41 0 chr12 7423817 7424014 -113833516 + B3 SINE B2 2 206 -10 5 641 663 196 5 0 chr12 7425099 7425558 -113831972 + (TG)n Simple_repeat Simple_repeat 1 461 0 6 641 258 235 0 0 chr12 7425571 7425673 -113831857 + (TG)n Simple_repeat Simple_repeat 1 102 0 6 641 1361 232 32 40 chr12 7426532 7426909 -113830621 + ORR1D1 LTR MaLR 1 374 0 6 641 366 61 0 0 chr12 7427013 7427062 -113830468 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 641 1070 120 6 0 chr12 7427067 7427242 -113830288 + (GGGA)n Simple_repeat Simple_repeat 1 176 0 6 641 865 279 168 8 chr12 7428302 7428660 -113828870 + MTD LTR MaLR 5 419 0 6 641 461 270 81 0 chr12 7428934 7429045 -113828485 + B1_Mur2 SINE Alu 8 127 -22 6 641 207 0 0 0 chr12 7429050 7429073 -113828457 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 641 480 243 11 11 chr12 7429560 7429735 -113827795 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 6 641 200 243 71 50 chr12 7429847 7429949 -113827581 - MIR SINE MIR -60 208 97 6 641 252 288 60 51 chr12 7430500 7430617 -113826913 - MLT1A1 LTR MaLR 0 408 291 6 641 281 350 21 55 chr12 7430741 7430886 -113826644 - MLT1A1 LTR MaLR -254 154 15 6 641 207 239 0 0 chr12 7431504 7431571 -113825959 + CT-rich Low_complexity Low_complexity 2 68 0 6 641 405 320 91 78 chr12 7431852 7432257 -113825273 + MLT1G1 LTR MaLR 92 486 -3 6 641 1186 182 6 47 chr12 7432339 7432613 -113824917 - RLTR24 LTR ERV1 0 529 1 6 641 576 0 0 0 chr12 7432826 7432890 -113824640 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 6 641 888 325 52 30 chr12 7434275 7434662 -113822868 + MLT2B2 LTR ERVL 1 497 -70 6 641 557 289 39 26 chr12 7435171 7435327 -113822203 + B3A SINE B2 5 162 -36 6 641 363 300 67 0 chr12 7435333 7435423 -113822107 + B3 SINE B2 45 140 -76 6 641 624 120 0 0 chr12 7436518 7436618 -113820912 + (TC)n Simple_repeat Simple_repeat 2 101 0 6 641 189 147 0 0 chr12 7436753 7436787 -113820743 + (T)n Simple_repeat Simple_repeat 1 34 0 6 641 371 21 0 20 chr12 7436920 7436969 -113820561 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 641 1139 176 49 52 chr12 7437562 7437886 -113819644 + Lx9 LINE L1 7321 7643 -1 6 641 318 310 17 17 chr12 7438426 7438541 -113818989 + CT-rich Low_complexity Low_complexity 1 115 0 6 641 6743 78 15 12 chr12 7438917 7440194 -113817336 - L1_Mus2 LINE L1 0 6566 5288 6 641 7958 44 1 0 chr12 7440190 7441204 -113816326 - L1Md_F2 LINE L1 -12 6570 5585 6 641 18572 128 15 2 chr12 7441205 7444334 -113813196 - L1Md_F LINE L1 -740 5143 1975 6 641 3054 154 57 8 chr12 7444335 7445568 -113811962 - L1Md_F LINE L1 -4115 1768 509 6 641 439 340 64 46 chr12 7445562 7445782 -113811748 - Lx8 LINE L1 -238 7235 7010 6 641 3143 65 0 0 chr12 7445782 7446180 -113811350 - L1_Mus1 LINE L1 0 6567 6170 6 641 439 340 64 46 chr12 7446180 7446240 -113811290 - Lx8 LINE L1 -464 7009 6950 6 641 294 350 35 25 chr12 7446555 7446754 -113810776 + MIR SINE MIR 52 252 -10 6 641 221 414 20 7 chr12 7446760 7446906 -113810624 - L3 LINE CR1 -779 3710 3563 6 641 381 43 0 0 chr12 7447465 7447512 -113810018 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 641 380 118 15 0 chr12 7448525 7448593 -113808937 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 6 641 691 261 50 71 chr12 7449872 7450070 -113807460 - B3A SINE B2 -3 195 2 6 641 2774 167 87 24 chr12 7450165 7450704 -113806826 - RLTR20B3 LTR ERVK 0 577 5 6 641 184 189 51 102 chr12 7451228 7451287 -113806243 + MIRm SINE MIR 217 272 -4 6 641 229 100 40 0 chr12 7452012 7452062 -113805468 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 6 641 548 235 0 25 chr12 7452821 7452943 -113804587 + AmnSINE1 SINE SINE 325 443 -132 6 641 13081 62 0 0 chr12 7454135 7455886 -113801644 + L1Md_F2 LINE L1 3836 5586 -297 6 641 8038 52 0 1 chr12 7455886 7456871 -113800659 + L1Md_F2 LINE L1 5587 6570 -12 6 641 245 280 119 57 chr12 7457039 7457198 -113800332 + MIR3 SINE MIR 27 195 -13 6 641 477 163 0 0 chr12 7458073 7458165 -113799365 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 641 845 223 247 31 chr12 7458204 7458531 -113798999 - MT2A LTR ERVL -76 457 95 6 641 411 267 42 33 chr12 7458533 7458653 -113798877 - MT2A LTR ERVL -410 123 3 6 641 737 150 0 8 chr12 7458738 7458872 -113798658 + CT-rich Low_complexity Low_complexity 3 135 0 6 641 252 0 0 0 chr12 7458872 7458900 -113798630 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 6 641 321 188 0 0 chr12 7458900 7458980 -113798550 + T-rich Low_complexity Low_complexity 1 80 0 6 641 252 337 41 35 chr12 7460105 7460274 -113797256 + MER58B DNA MER1_type 2 171 -170 6 641 23 33 0 0 chr12 7460274 7460304 -113797226 + AT_rich Low_complexity Low_complexity 1 30 0 6 641 538 314 29 6 chr12 7460715 7460888 -113796642 - MamRep434 DNA TcMar -222 204 28 6 641 680 304 150 16 chr12 7461326 7461580 -113795950 + B4A SINE B4 5 292 0 6 641 330 26 0 0 chr12 7461636 7461675 -113795855 + (CATA)n Simple_repeat Simple_repeat 4 42 0 6 641 192 40 0 0 chr12 7462415 7462440 -113795090 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 6 641 286 310 37 0 chr12 7462554 7462658 -113794872 + PB1 SINE Alu 14 117 0 6 641 432 374 75 12 chr12 7462798 7463039 -113794491 + MTD LTR MaLR 5 260 -159 6 641 266 136 0 0 chr12 7463049 7463093 -113794437 - MERVL-int LTR ERVL -982 4503 4460 6 641 418 274 132 15 chr12 7463099 7463229 -113794301 + MTD LTR MaLR 226 385 -34 6 641 627 60 0 0 chr12 7465823 7465907 -113791623 + (TC)n Simple_repeat Simple_repeat 2 85 0 6 641 3004 68 0 17 chr12 7467051 7467457 -113790073 - MTB_Mm LTR MaLR 0 407 9 6 641 1469 292 40 19 chr12 7467795 7468684 -113788846 + Lx6 LINE L1 6251 7449 -11 6 641 617 71 20 0 chr12 7468700 7468799 -113788731 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 6 641 607 297 11 81 chr12 7469496 7469767 -113787763 - MamGypLTR2b LTR Gypsy -15 907 656 6 641 216 0 0 0 chr12 7470308 7470332 -113787198 + (TCTA)n Simple_repeat Simple_repeat 2 25 0 6 641 357 282 0 0 chr12 7470349 7470420 -113787110 - B4 SINE B4 -212 80 10 6 80 722 250 37 38 chr12 7470982 7471245 -113786285 - B3 SINE B2 -18 198 1 6 642 183 316 50 12 chr12 7471539 7471619 -113785911 - L2c LINE L2 -4 3383 3301 6 642 297 0 0 0 chr12 7472190 7472223 -113785307 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 642 26 0 0 0 chr12 7472442 7472468 -113785062 + AT_rich Low_complexity Low_complexity 1 26 0 6 642 317 262 0 0 chr12 7472684 7472745 -113784785 - MTD LTR MaLR -229 190 130 6 642 1627 253 13 36 chr12 7472747 7473133 -113784397 - MTD LTR MaLR -42 377 1 6 642 1160 263 47 39 chr12 7473537 7473990 -113783540 - RLTR11A2 LTR ERVK -46 482 4 6 642 308 302 7 7 chr12 7474711 7474861 -113782669 + (CAGGA)n Simple_repeat Simple_repeat 1 150 0 6 642 883 312 115 57 chr12 7475019 7475594 -113781936 + RLTR18 LTR ERVK 9 616 0 6 642 215 171 24 0 chr12 7475931 7475972 -113781558 + CT-rich Low_complexity Low_complexity 3 44 0 6 642 2230 106 3 58 chr12 7476178 7476520 -113781010 + ORR1A2 LTR MaLR 1 323 -4 6 642 877 297 31 24 chr12 7477219 7477512 -113780018 + Lx6 LINE L1 7082 7376 -84 6 642 297 0 0 0 chr12 7477702 7477735 -113779795 + (CTA)n Simple_repeat Simple_repeat 2 34 0 6 642 378 0 0 0 chr12 7477735 7477777 -113779753 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 642 198 103 0 0 chr12 7478702 7478731 -113778799 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 642 185 94 31 0 chr12 7478733 7478765 -113778765 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 642 999 25 0 0 chr12 7478836 7478954 -113778576 + (GA)n Simple_repeat Simple_repeat 1 118 0 6 642 281 222 41 14 chr12 7479204 7479277 -113778253 + ORR1D2 LTR MaLR 285 359 -11 6 642 1165 332 13 8 chr12 7480176 7480553 -113776977 + MTEa LTR MaLR 1 379 0 6 642 209 333 49 12 chr12 7481329 7481411 -113776119 + L2 LINE L2 2331 2415 -1004 6 642 673 311 94 9 chr12 7481875 7482099 -113775431 + B4A SINE B4 8 250 -42 6 642 1621 292 65 23 chr12 7482382 7483001 -113774529 - Lx9 LINE L1 -233 7411 6767 6 642 239 289 0 0 chr12 7483686 7483738 -113773792 + (CACG)n Simple_repeat Simple_repeat 4 55 0 6 642 571 287 49 108 chr12 7484307 7484510 -113773020 + B3A SINE B2 1 191 -4 6 642 800 267 23 5 chr12 7484516 7484734 -113772796 + ID_B1 SINE B4 2 223 -1 6 642 423 274 325 0 chr12 7484771 7484928 -113772602 - B3 SINE B2 -8 208 1 6 642 276 300 14 0 chr12 7485103 7485173 -113772357 + ID SINE ID 14 84 -140 6 642 596 370 69 37 chr12 7485654 7486030 -113771500 - MLT1E1A LTR MaLR 0 680 293 6 642 990 309 56 32 chr12 7486185 7486526 -113771004 - ORR1E LTR MaLR -10 349 1 6 642 573 55 0 0 chr12 7488057 7488130 -113769400 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 6 642 346 304 92 28 chr12 7489182 7489324 -113768206 - MER5A1 DNA MER1_type -9 157 7 6 642 597 311 17 11 chr12 7489516 7489695 -113767835 - B3A SINE B2 -16 182 3 6 642 287 35 34 34 chr12 7489954 7490013 -113767517 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 642 389 378 58 19 chr12 7490182 7490462 -113767068 - MLT1J1 LTR MaLR -143 305 3 6 642 520 228 48 16 chr12 7490465 7490590 -113766940 + MER105 DNA DNA 31 159 -45 6 642 1146 57 75 6 chr12 7490880 7491040 -113766490 - B2_Mm2 SINE B2 -23 172 2 6 642 1021 226 162 182 chr12 7491480 7491755 -113765775 - MT2A LTR ERVL 0 533 184 6 642 894 102 73 0 chr12 7491755 7491892 -113765638 + B1_Mus1 SINE Alu 2 148 0 6 642 1021 226 162 182 chr12 7491892 7492153 -113765377 - MT2A LTR ERVL -350 183 8 6 642 396 111 0 0 chr12 7493729 7493801 -113763729 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 642 387 0 0 0 chr12 7493801 7493844 -113763686 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 642 213 167 0 0 chr12 7494143 7494197 -113763333 + T-rich Low_complexity Low_complexity 1 54 0 6 642 587 301 19 28 chr12 7494223 7494438 -113763092 + B4A SINE B4 3 215 -77 7 642 5626 78 11 0 chr12 7494438 7495241 -113762289 - Lx3B LINE L1 -62 5824 5013 7 642 6204 138 37 28 chr12 7495243 7496339 -113761191 + Lx3B LINE L1 5863 6968 -5 7 642 204 192 0 37 chr12 7496344 7496398 -113761132 + GA-rich Low_complexity Low_complexity 2 53 0 7 642 290 362 97 58 chr12 7496663 7496971 -113760559 - L2a LINE L2 -18 3408 3089 7 642 384 22 0 0 chr12 7496990 7497035 -113760495 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 642 2117 104 58 7 chr12 7497497 7497807 -113759723 - ORR1A3 LTR MaLR 0 326 1 7 642 335 275 52 13 chr12 7498064 7498214 -113759316 + ID_B1 SINE B4 2 201 -23 7 642 708 261 5 53 chr12 7498324 7498514 -113759016 + B3A SINE B2 2 182 -16 7 642 23 33 0 0 chr12 7498790 7498820 -113758710 + AT_rich Low_complexity Low_complexity 1 30 0 7 642 21 57 0 0 chr12 7498966 7499001 -113758529 + AT_rich Low_complexity Low_complexity 1 35 0 7 642 211 93 25 74 chr12 7499054 7499135 -113758395 + (TTTG)n Simple_repeat Simple_repeat 2 78 0 7 642 530 275 32 95 chr12 7500133 7500322 -113757208 + B3 SINE B2 40 216 0 1 642 215 245 53 97 chr12 7500897 7501010 -113756520 - L3 LINE CR1 -3620 869 762 2 642 318 26 0 0 chr12 7501345 7501384 -113756146 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 642 404 360 86 7 chr12 7501397 7501537 -113755993 - B3A SINE B2 -47 151 1 4 642 235 236 167 0 chr12 7501609 7501681 -113755849 - RLTR13A3 LTR ERVK -885 93 10 5 642 1046 277 60 65 chr12 7501905 7502257 -113755273 + ORR1E LTR MaLR 4 353 -6 6 642 240 35 0 0 chr12 7504672 7504701 -113752829 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 642 435 19 0 0 chr12 7505073 7505125 -113752405 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 642 218 315 154 20 chr12 7505222 7505371 -113752159 - B4 SINE B4 -122 170 2 9 642 23 0 0 0 chr12 7505526 7505549 -113751981 + AT_rich Low_complexity Low_complexity 1 23 0 1 642 1186 35 14 20 chr12 7505549 7505697 -113751833 - B1_Mus2 SINE Alu 0 147 1 1 642 387 0 0 0 chr12 7507305 7507348 -113750182 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 642 324 0 0 0 chr12 7507348 7507383 -113750147 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 642 30 0 0 0 chr12 7507604 7507634 -113749896 + AT_rich Low_complexity Low_complexity 1 30 0 1 642 1034 242 5 0 chr12 7507966 7508181 -113749349 + B3 SINE B2 1 216 0 1 642 210 304 27 89 chr12 7508227 7508339 -113749191 - L2c LINE L2 -9 3378 3274 1 642 8822 133 29 54 chr12 7509528 7511719 -113745811 - L1Md_F2 LINE L1 -496 6086 3955 1 642 195 42 0 0 chr12 7511990 7512014 -113745516 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 642 834 273 46 14 chr12 7512272 7512640 -113744890 + L1MB7 LINE L1 2175 2554 -3592 1 642 338 300 103 41 chr12 7512851 7513143 -113744387 + L1MC LINE L1 2809 3118 -3028 2 642 391 336 41 0 chr12 7513254 7513376 -113744154 + ID_B1 SINE B4 84 210 -14 2 642 198 0 0 0 chr12 7513377 7513399 -113744131 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 642 488 361 51 51 chr12 7513480 7513871 -113743659 + L1MB7 LINE L1 3277 3667 -2479 1 642 354 23 0 0 chr12 7513919 7513962 -113743568 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 642 270 0 0 0 chr12 7513962 7513991 -113743539 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 642 242 309 21 31 chr12 7513994 7514091 -113743439 - RSINE1 SINE B4 -22 143 48 2 642 2444 199 21 64 chr12 7514161 7514409 -113743121 + RLTR18B LTR ERVK 1 243 -269 2 642 3203 41 23 0 chr12 7514409 7514796 -113742734 + MTA_Mm LTR MaLR 1 396 0 2 642 2444 199 21 64 chr12 7514796 7515078 -113742452 + RLTR18B LTR ERVK 244 508 -4 2 642 1289 253 34 56 chr12 7515523 7516158 -113741372 + L1MB7 LINE L1 5369 5994 -190 1 642 2160 136 36 11 chr12 7516383 7516740 -113740790 + RLTR9A LTR ERVK 3 368 0 2 642 208 121 0 0 chr12 7516991 7517024 -113740506 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 642 222 37 0 0 chr12 7517392 7517419 -113740111 + (T)n Simple_repeat Simple_repeat 1 27 0 3 642 1222 34 0 7 chr12 7517419 7517567 -113739963 - B1_Mus2 SINE Alu 0 147 1 3 642 357 43 0 0 chr12 7517657 7517704 -113739826 + (CAAAAA)n Simple_repeat Simple_repeat 4 50 0 3 642 241 219 0 0 chr12 7518271 7518312 -113739218 - ID SINE ID -150 74 34 3 642 890 269 86 78 chr12 7518328 7518853 -113738677 - MT2A LTR ERVL -2 531 3 3 642 278 155 0 0 chr12 7520783 7520841 -113736689 + Lx8 LINE L1 7414 7471 -2 3 642 414 0 0 0 chr12 7521177 7521223 -113736307 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 642 181 238 0 24 chr12 7521223 7521305 -113736225 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 3 642 280 305 77 28 chr12 7521843 7522025 -113735505 + L1MEe LINE L1 206 396 -4458 3 642 369 95 0 0 chr12 7522517 7522580 -113734950 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 642 206 62 31 0 chr12 7522704 7522736 -113734794 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 642 1036 83 7 7 chr12 7522737 7522882 -113734648 - B1_Mus1 SINE Alu -1 147 3 4 642 531 339 5 59 chr12 7522908 7523112 -113734418 - B4A SINE B4 -72 220 28 4 642 563 298 54 25 chr12 7523279 7523482 -113734048 + MLT1D LTR MaLR 291 499 -6 4 642 722 308 40 4 chr12 7523662 7523939 -113733591 + Lx8 LINE L1 6927 7213 -260 4 642 377 358 7 0 chr12 7524541 7524678 -113732852 + RSINE1 SINE B4 28 165 0 4 642 2156 128 12 3 chr12 7524719 7525049 -113732481 + Lx2 LINE L1 6665 6997 0 4 642 609 96 0 0 chr12 7525186 7525280 -113732250 + (CA)n Simple_repeat Simple_repeat 2 95 0 4 642 599 326 104 57 chr12 7525311 7525887 -113731643 + L1M5 LINE L1 3654 4256 -1890 4 642 187 250 18 18 chr12 7525888 7525945 -113731585 - L2c LINE L2 -44 3343 3287 4 642 345 330 105 8 chr12 7525951 7526217 -113731313 + L1M5 LINE L1 4321 4612 -1534 4 642 243 61 0 0 chr12 7526235 7526268 -113731262 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 642 597 83 0 0 chr12 7526270 7526354 -113731176 + (GGGA)n Simple_repeat Simple_repeat 2 85 0 5 642 1347 63 0 0 chr12 7526922 7527221 -113730309 + (TG)n Simple_repeat Simple_repeat 1 299 0 5 642 480 290 52 21 chr12 7527952 7528161 -113729369 - MTD LTR MaLR -195 184 1 5 642 382 355 6 13 chr12 7530182 7530339 -113727191 - RSINE1 SINE B4 -6 159 4 5 642 1017 155 161 0 chr12 7531708 7531901 -113725629 + URR1B DNA MER1_type 2 225 0 5 642 884 289 39 45 chr12 7531911 7532219 -113725311 - MLT1B LTR MaLR -80 310 5 5 642 376 299 15 8 chr12 7532642 7532841 -113724689 - L1ME2 LINE L1 -348 5894 5695 5 642 291 208 6 38 chr12 7532990 7533150 -113724380 + GA-rich Low_complexity Low_complexity 2 156 0 5 642 3439 90 56 0 chr12 7533219 7533717 -113723813 + MT2B2 LTR ERVL 1 526 -58 5 642 450 0 0 0 chr12 7533717 7533767 -113723763 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 642 460 34 0 17 chr12 7534357 7534417 -113723113 + MT2B2 LTR ERVL 524 582 -2 5 642 302 315 36 71 chr12 7534417 7534557 -113722973 - MTEa LTR MaLR -244 135 1 6 642 391 209 101 36 chr12 7534996 7535135 -113722395 + B1F SINE Alu 2 149 0 6 642 242 319 0 14 chr12 7535149 7535222 -113722308 + BC1_Mm scRNA scRNA 14 85 -67 6 642 1341 113 4 31 chr12 7536451 7536680 -113720850 - Lx2B LINE L1 -3 6997 6775 6 642 322 320 16 54 chr12 7537061 7537190 -113720340 + L1M5 LINE L1 3904 4027 -2119 6 642 457 331 89 27 chr12 7537893 7538139 -113719391 + L1M5 LINE L1 4891 5154 -992 6 642 1047 279 47 23 chr12 7538139 7538569 -113718961 + BGLII_B LTR ERVK 2 441 0 6 642 457 331 89 27 chr12 7538569 7538614 -113718916 + L1M5 LINE L1 5155 5200 -946 6 642 484 277 41 28 chr12 7538749 7538894 -113718636 + B4A SINE B4 126 272 -20 6 642 366 242 52 39 chr12 7538972 7539127 -113718403 + L1M5 LINE L1 5375 5531 -642 6 642 646 328 5 49 chr12 7539243 7539448 -113718082 + B3A SINE B2 1 196 -2 6 642 585 316 15 20 chr12 7539480 7539677 -113717853 + B3A SINE B2 3 198 0 6 642 24 0 0 0 chr12 7539818 7539842 -113717688 + AT_rich Low_complexity Low_complexity 1 24 0 7 642 239 190 17 0 chr12 7539981 7540039 -113717491 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 642 334 176 108 21 chr12 7540464 7540557 -113716973 - L1M6 LINE L1 -6300 196 96 7 642 342 0 0 0 chr12 7540920 7540958 -113716572 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 7 642 984 129 45 0 chr12 7540958 7541113 -113716417 - B2_Mm2 SINE B2 -33 162 1 7 642 547 252 170 43 chr12 7542110 7542383 -113715147 - ORR1E LTR MaLR -8 362 39 7 642 258 32 0 0 chr12 7542383 7542414 -113715116 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 642 547 236 163 49 chr12 7542414 7542450 -113715080 - ORR1E LTR MaLR -313 46 4 7 642 2397 142 73 5 chr12 7542964 7543388 -113714142 - RLTR26 LTR ERVK 0 642 190 7 642 444 126 126 0 chr12 7543406 7543493 -113714037 - RLTR26 LTR ERVK -544 98 1 7 642 21 0 0 0 chr12 7543521 7543542 -113713988 + AT_rich Low_complexity Low_complexity 1 21 0 7 642 1624 137 38 22 chr12 7544104 7544417 -113713113 - L1_Mus4 LINE L1 -3 6633 6316 7 642 577 307 19 14 chr12 7544691 7544906 -113712624 - B3 SINE B2 0 216 1 8 642 436 277 63 57 chr12 7545540 7545858 -113711672 - L1M5 LINE L1 -823 5323 5004 8 642 242 237 177 10 chr12 7546126 7546304 -113711226 + MER33 DNA MER1_type 104 312 -12 8 642 228 307 13 26 chr12 7546416 7546493 -113711037 - ID4 SINE ID -7 76 1 8 642 516 293 35 18 chr12 7546574 7546859 -113710671 - L1M5 LINE L1 -1446 4700 4411 8 642 704 234 29 0 chr12 7547761 7547898 -113709632 - B1_Mur1 SINE Alu -8 141 1 8 642 477 298 148 21 chr12 7550190 7550433 -113707097 + B4A SINE B4 2 275 -17 8 642 182 295 132 33 chr12 7552248 7552339 -113705191 + MER5A DNA MER1_type 89 188 -1 8 642 195 100 0 0 chr12 7553004 7553034 -113704496 + (TC)n Simple_repeat Simple_repeat 2 31 0 8 642 250 296 0 14 chr12 7553047 7553119 -113704411 + (TA)n Simple_repeat Simple_repeat 2 72 0 8 642 1169 264 74 18 chr12 7553194 7553533 -113703997 + MTE2b LTR MaLR 18 375 -4 8 642 275 332 42 66 chr12 7553597 7553810 -113703720 - MIR SINE MIR -21 241 34 9 642 474 18 0 0 chr12 7555289 7555344 -113702186 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 642 520 296 41 17 chr12 7556504 7556676 -113700854 + MER97c DNA MER1_type? 1 176 -914 9 642 423 0 0 0 chr12 7556731 7556778 -113700752 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 642 507 172 35 0 chr12 7556780 7556867 -113700663 - B3A SINE B2 -104 94 5 9 642 1064 257 48 8 chr12 7557423 7557834 -113699696 + L1MA7 LINE L1 5854 6284 -7 9 642 24 32 0 0 chr12 7557834 7557865 -113699665 + AT_rich Low_complexity Low_complexity 1 31 0 9 642 381 299 149 22 chr12 7557880 7558061 -113699469 + ID_B1 SINE B4 3 206 -18 9 642 2010 111 179 6 chr12 7559222 7559558 -113697972 - ORR1B1 LTR MaLR 0 394 1 9 642 265 289 57 50 chr12 7559897 7560177 -113697353 + L1ME3 LINE L1 5114 5395 -751 9 642 236 319 110 28 chr12 7560487 7560811 -113696719 + L1ME3 LINE L1 5595 5944 -218 9 642 189 0 0 0 chr12 7562173 7562194 -113695336 + (A)n Simple_repeat Simple_repeat 1 21 0 1 642 825 298 42 21 chr12 7562614 7562899 -113694631 - B4A SINE B4 0 292 2 1 642 861 177 158 20 chr12 7564850 7565046 -113692484 - URR1B DNA MER1_type -2 223 1 1 642 1203 321 27 0 chr12 7565083 7565419 -113692111 + MTEa LTR MaLR 1 345 -34 1 642 189 315 24 110 chr12 7567102 7567184 -113690346 + L2c LINE L2 3298 3372 -15 1 642 516 200 84 0 chr12 7567375 7567510 -113690020 - MIR SINE MIR -21 247 86 1 642 194 392 41 0 chr12 7567713 7567810 -113689720 + MIR3 SINE MIR 67 167 -41 1 642 414 0 0 0 chr12 7568692 7568738 -113688792 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 642 318 352 44 15 chr12 7570516 7570741 -113686789 + MIRb SINE MIR 2 241 -27 1 642 218 309 60 30 chr12 7571702 7571802 -113685728 - L2b LINE L2 -2 3424 3322 1 642 298 347 95 49 chr12 7572008 7572440 -113685090 - L2b LINE L2 -196 3179 2723 1 642 252 309 140 30 chr12 7572799 7572999 -113684531 - L2b LINE L2 -834 2585 2364 1 642 796 104 58 29 chr12 7573918 7574057 -113683473 - URR1B DNA MER1_type 0 225 83 1 642 345 342 89 21 chr12 7574672 7574908 -113682622 - L2c LINE L2 0 3387 3136 1 642 374 366 68 42 chr12 7575217 7575399 -113682131 - MLT1A LTR MaLR -1 373 195 1 642 306 0 0 0 chr12 7575399 7575433 -113682097 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 642 374 366 68 42 chr12 7575433 7575561 -113681969 - MLT1A LTR MaLR -180 194 55 1 642 358 244 145 12 chr12 7575579 7575662 -113681868 - B1F1 SINE Alu -53 96 3 1 642 232 338 38 0 chr12 7575747 7575827 -113681703 - MER5A1 DNA MER1_type -53 113 31 1 642 1018 216 21 0 chr12 7575977 7576171 -113681359 - B3 SINE B2 -1 215 18 1 642 200 296 56 14 chr12 7577256 7577328 -113680202 + MIRc SINE MIR 35 109 -159 1 642 267 233 0 0 chr12 7577352 7577455 -113680075 + GA-rich Low_complexity Low_complexity 1 103 0 1 642 1008 285 49 16 chr12 7577455 7577762 -113679768 - ORR1E LTR MaLR -37 322 6 1 642 429 70 0 0 chr12 7577934 7577991 -113679539 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 642 417 20 0 0 chr12 7579417 7579467 -113678063 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 642 198 143 0 0 chr12 7580058 7580093 -113677437 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 642 225 196 0 0 chr12 7580162 7580208 -113677322 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 642 493 212 31 0 chr12 7580215 7580375 -113677155 + Lx9 LINE L1 7479 7643 -1 1 642 2884 134 75 9 chr12 7581227 7581761 -113675769 - Lx4B LINE L1 -422 6636 6068 1 642 1851 188 43 36 chr12 7581764 7582183 -113675347 + Lx4B LINE L1 6626 7047 -11 1 642 4888 153 72 12 chr12 7582585 7583430 -113674100 + RMER19B LTR ERVK 1 896 -6 1 642 239 222 0 0 chr12 7583431 7583476 -113674054 + CT-rich Low_complexity Low_complexity 4 48 0 1 642 333 0 0 0 chr12 7583485 7583522 -113674008 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 642 466 377 6 56 chr12 7583529 7583689 -113673841 - RSINE1 SINE B4 -10 155 4 1 642 306 0 0 0 chr12 7583696 7583730 -113673800 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 1 642 553 272 0 22 chr12 7583732 7583871 -113673659 - B1_Mur1 SINE Alu -12 137 2 1 642 1886 166 6 87 chr12 7583932 7584288 -113673242 + RLTR21 LTR ERVK 3 329 -1243 1 642 1409 112 0 0 chr12 7584277 7584491 -113673039 + RLTR21 LTR ERVK 648 861 -711 1 642 774 217 63 15 chr12 7584875 7585081 -113672449 - B3 SINE B2 0 216 1 1 642 1344 170 9 0 chr12 7586187 7586411 -113671119 + URR1A DNA MER1_type 1 226 0 1 642 5244 99 37 6 chr12 7586414 7587196 -113670334 + L1_Mus4 LINE L1 5826 6631 -5 1 642 215 391 50 16 chr12 7587635 7587817 -113669713 - MIRb SINE MIR -78 190 3 1 642 267 352 0 0 chr12 7588481 7588552 -113668978 + RSINE1 SINE B4 72 142 -23 1 642 324 0 0 0 chr12 7588552 7588588 -113668942 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 642 344 200 17 17 chr12 7588651 7588768 -113668762 + GA-rich Low_complexity Low_complexity 2 118 0 1 642 729 34 0 0 chr12 7588769 7588857 -113668673 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 642 288 316 10 10 chr12 7590441 7590540 -113666990 - MLT1B LTR MaLR -2 388 290 1 642 323 317 16 16 chr12 7591856 7591978 -113665552 + GA-rich Low_complexity Low_complexity 6 127 0 1 642 330 281 67 10 chr12 7592176 7592280 -113665250 - MLT1B LTR MaLR -2 388 279 1 642 1120 42 0 0 chr12 7592307 7592449 -113665081 + B1_Mm SINE Alu 6 147 0 1 642 588 263 52 16 chr12 7592462 7592655 -113664875 - MLT1B LTR MaLR -128 262 63 1 642 198 261 22 0 chr12 7592906 7592952 -113664578 - L2c LINE L2 -67 3320 3274 1 642 1208 117 0 0 chr12 7593983 7594154 -113663376 + B2_Mm2 SINE B2 2 172 -23 1 642 349 312 64 91 chr12 7594489 7594676 -113662854 + MIR SINE MIR 8 189 -73 1 642 396 0 0 0 chr12 7594859 7594903 -113662627 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 642 222 37 0 0 chr12 7595038 7595065 -113662465 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 642 629 304 65 9 chr12 7595065 7595281 -113662249 - B4 SINE B4 -63 229 2 1 642 255 260 50 10 chr12 7595498 7595599 -113661931 - MER21B LTR ERV1 -142 721 617 1 642 353 327 0 0 chr12 7595677 7595784 -113661746 + MLT1D LTR MaLR 399 505 0 1 642 243 354 0 60 chr12 7595785 7595869 -113661661 + MIR SINE MIR 1 79 -183 1 642 2730 23 2 233 chr12 7595896 7596403 -113661127 - RLTR10 LTR ERVK 0 390 1 1 642 8299 20 2 1 chr12 7596405 7597399 -113660131 - RLTR10-int LTR ERVK -3 1984 990 1 642 7166 36 8 1 chr12 7597493 7598400 -113659130 - RLTR10-int LTR ERVK -1034 953 41 1 642 2730 23 2 233 chr12 7598410 7598917 -113658613 - RLTR10 LTR ERVK 0 390 1 1 642 261 0 0 0 chr12 7600769 7600798 -113656732 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1 643 321 68 0 0 chr12 7603299 7603343 -113654187 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 643 450 0 0 0 chr12 7603343 7603392 -113654138 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 643 2604 78 59 3 chr12 7603681 7604052 -113653478 - L1_Mus1 LINE L1 0 6567 6176 1 643 1471 42 0 11 chr12 7604054 7604244 -113653286 + L1_Mm LINE L1 5358 5545 -338 1 643 427 335 25 20 chr12 7604460 7604661 -113652869 + MTEa LTR MaLR 2 203 -176 1 643 384 343 45 61 chr12 7605184 7605448 -113652082 + MT2A LTR ERVL 189 448 -85 1 643 190 293 24 24 chr12 7605737 7605821 -113651709 + MIR SINE MIR 58 141 -121 1 643 300 53 0 0 chr12 7605823 7605861 -113651669 + (ATG)n Simple_repeat Simple_repeat 2 39 0 1 643 189 0 0 0 chr12 7606075 7606096 -113651434 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 1 643 246 319 24 0 chr12 7609315 7609404 -113648126 - L2c LINE L2 -51 3336 3239 1 643 255 284 105 0 chr12 7609632 7609727 -113647803 + MLT2C1 LTR ERVL 13 117 -347 1 643 736 334 100 42 chr12 7609731 7610062 -113647468 - ORR1E LTR MaLR -7 352 3 1 643 562 289 44 33 chr12 7610064 7610273 -113647257 + MLT2C1 LTR ERVL 118 351 -63 1 643 3197 46 13 3 chr12 7611380 7611772 -113645758 + MTA_Mm LTR MaLR 1 396 0 1 643 376 373 12 58 chr12 7613009 7613180 -113644350 + RSINE1 SINE B4 3 165 0 1 643 259 325 0 70 chr12 7613818 7613904 -113643626 - RSINE1 SINE B4 0 165 86 1 643 979 200 92 10 chr12 7615051 7615258 -113642272 - URR1B DNA MER1_type 0 225 2 1 643 2875 51 0 17 chr12 7615321 7615682 -113641848 + L1_Mus1 LINE L1 6213 6567 0 1 643 333 0 0 0 chr12 7616291 7616328 -113641202 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 643 845 337 86 42 chr12 7616349 7616758 -113640772 + MLT1D LTR MaLR 1 427 -78 1 643 245 297 10 19 chr12 7617254 7617357 -113640173 + CT-rich Low_complexity Low_complexity 3 104 0 1 643 308 247 234 30 chr12 7619079 7619246 -113638284 - B3 SINE B2 -12 204 4 1 643 4421 223 102 2 chr12 7619279 7619418 -113638112 - Lx9 LINE L1 -1 7643 7500 1 643 444 37 0 0 chr12 7619418 7619472 -113638058 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 643 4421 223 102 2 chr12 7619472 7620548 -113636982 - Lx9 LINE L1 -145 7499 6308 1 643 862 51 0 17 chr12 7620586 7620706 -113636824 - B1_Mus1 SINE Alu 0 148 31 1 643 438 312 79 108 chr12 7622854 7623062 -113634468 + ORR1E LTR MaLR 10 211 -163 1 643 479 281 52 12 chr12 7623480 7623653 -113633877 - RMER5 LTR ERV1 -31 503 324 1 643 718 310 162 19 chr12 7623660 7623969 -113633561 + MTD LTR MaLR 67 419 0 1 643 355 303 21 64 chr12 7624008 7624149 -113633381 - MER63B DNA AcHobo -4 432 298 1 643 1364 84 0 5 chr12 7624689 7624881 -113632649 + L1Md_F2 LINE L1 6380 6570 -12 1 643 477 279 144 20 chr12 7625622 7625823 -113631707 - RMER15 LTR ERVL -14 561 336 1 643 1182 296 40 60 chr12 7626311 7626668 -113630862 + Lx8 LINE L1 6966 7337 -136 1 643 563 45 68 0 chr12 7626668 7626756 -113630774 + L1Md_F3 LINE L1 6491 6584 0 1 643 1182 296 40 60 chr12 7626756 7626916 -113630614 + Lx8 LINE L1 7338 7473 0 1 643 279 0 0 0 chr12 7627626 7627657 -113629873 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 643 243 0 0 0 chr12 7627658 7627685 -113629845 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 643 240 322 0 65 chr12 7627857 7627950 -113629580 - LTR16A LTR ERVL -158 293 207 1 643 1809 270 72 46 chr12 7628070 7628830 -113628700 + Lx8 LINE L1 6690 7469 -4 1 643 335 360 74 13 chr12 7629810 7630122 -113627408 - HERV16-int LTR ERVL -3655 1341 1011 1 643 583 271 24 110 chr12 7630264 7630636 -113626894 + MTEb LTR MaLR 2 363 -16 1 643 374 278 50 50 chr12 7630702 7630823 -113626707 - LTR16A LTR ERVL -265 186 66 1 643 10846 151 20 23 chr12 7631341 7632046 -113625484 + Lx2B LINE L1 2750 3476 -2401 1 643 931 92 61 8 chr12 7632046 7632177 -113625353 + B1_Mus1 SINE Alu 3 140 -8 1 643 10846 151 20 23 chr12 7632177 7633663 -113623867 + Lx2B LINE L1 3477 4934 -943 1 643 3006 68 10 0 chr12 7633665 7634049 -113623481 - RLTR10 LTR ERVK -2 388 1 1 643 8142 28 0 4 chr12 7634052 7635049 -113622481 - RLTR10-int LTR ERVK -5 1982 990 1 643 537 300 32 32 chr12 7635131 7635410 -113622120 - RLTR10-int LTR ERVK -5987 1594 1316 1 643 6431 71 38 36 chr12 7635579 7636569 -113620961 - RLTR10-int LTR ERVK -995 992 1 1 643 2799 68 51 8 chr12 7636571 7636943 -113620587 - RLTR10 LTR ERVK -2 388 1 1 643 6606 178 44 8 chr12 7636943 7638928 -113618602 + Lx2B LINE L1 4938 6998 -2 1 643 7658 156 117 8 chr12 7639130 7640770 -113616760 + Lx5 LINE L1 3808 5626 -251 1 643 5497 208 48 8 chr12 7640769 7642010 -113615520 + Lx5 LINE L1 5756 7046 -4 1 643 407 201 0 27 chr12 7642183 7642331 -113615199 + (TG)n Simple_repeat Simple_repeat 1 144 0 1 643 393 270 0 11 chr12 7642895 7642985 -113614545 + PB1D10 SINE Alu 21 109 -8 2 643 546 278 147 63 chr12 7643160 7643234 -113614296 + MLT1A LTR MaLR 1 65 -309 2 643 378 0 0 0 chr12 7643234 7643276 -113614254 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 643 546 278 147 63 chr12 7643276 7643535 -113613995 + MLT1A LTR MaLR 66 362 -12 2 643 644 135 0 9 chr12 7644039 7644151 -113613379 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 2 643 366 23 0 0 chr12 7645062 7645105 -113612425 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 643 714 322 40 12 chr12 7645147 7645395 -113612135 - B4A SINE B4 -20 272 18 2 643 3705 124 7 21 chr12 7645405 7645983 -113611547 - Lx2A1 LINE L1 -3 7005 6436 2 643 2964 113 12 1 chr12 7645983 7646588 -113610942 + Lx2A1 LINE L1 5375 5985 -1023 2 643 316 313 69 20 chr12 7646928 7647130 -113610400 + L1M5 LINE L1 5498 5709 -531 2 643 12079 114 1 1 chr12 7647436 7649356 -113608174 + L1_Mm LINE L1 2340 4259 -1624 2 643 13859 127 36 20 chr12 7649349 7652348 -113605182 - L1Md_F LINE L1 -2615 3268 217 2 643 1899 237 78 31 chr12 7652359 7653187 -113604343 - L1Md_F LINE L1 -5492 1027 160 2 643 398 298 76 9 chr12 7653316 7653421 -113604109 - PB1D9 SINE Alu -8 112 1 2 643 521 336 0 7 chr12 7653451 7653586 -113603944 + RSINE1 SINE B4 1 134 -31 2 643 279 157 0 0 chr12 7653983 7654034 -113603496 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 2 643 210 240 13 39 chr12 7654939 7655017 -113602513 + A-rich Low_complexity Low_complexity 3 78 0 2 643 669 299 19 27 chr12 7655036 7655297 -113602233 - Lx7 LINE L1 -375 7321 7063 2 643 1964 58 4 8 chr12 7658711 7658971 -113598559 + L1_Mus1 LINE L1 6309 6567 0 2 643 237 346 53 38 chr12 7659477 7659609 -113597921 + MER94 DNA AcHobo 1 134 0 2 643 866 211 43 48 chr12 7659931 7660140 -113597390 + B3 SINE B2 8 215 -1 2 643 1063 246 70 106 chr12 7661089 7661475 -113596055 + MTEa LTR MaLR 8 379 0 2 643 1279 151 0 26 chr12 7661680 7661911 -113595619 - URR1B DNA MER1_type 0 225 1 2 643 578 333 15 10 chr12 7662677 7662877 -113594653 + MIRb SINE MIR 1 201 -67 2 643 184 323 55 124 chr12 7662941 7663086 -113594444 - L2b LINE L2 -63 3312 3178 2 643 834 175 7 14 chr12 7663150 7663295 -113594235 + B1_Mus2 SINE Alu 3 146 -1 2 643 2517 277 48 17 chr12 7663405 7664732 -113592798 - Lx7 LINE L1 -1359 6337 4935 2 643 278 232 0 0 chr12 7664876 7664945 -113592585 - Lx7 LINE L1 -955 4925 4857 2 643 279 189 242 0 chr12 7664940 7665035 -113592495 - L1_Mur3 LINE L1 -1149 4731 4614 2 643 301 250 0 24 chr12 7665033 7665115 -113592415 + L1_Mur3 LINE L1 4730 4809 -1071 2 643 1772 314 43 47 chr12 7665121 7666064 -113591466 + Lx8 LINE L1 6298 7237 -236 2 643 378 0 0 0 chr12 7666095 7666137 -113591393 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 2 643 820 150 47 0 chr12 7666137 7666264 -113591266 - B1_Mus1 SINE Alu -12 136 4 2 643 249 108 0 0 chr12 7666457 7666494 -113591036 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2 643 222 340 84 11 chr12 7667143 7667238 -113590292 + L3 LINE CR1 4330 4431 -58 2 643 328 365 31 77 chr12 7667422 7667683 -113589847 - MIRc SINE MIR -17 251 3 2 643 300 330 0 33 chr12 7668515 7668637 -113588893 + GA-rich Low_complexity Low_complexity 2 119 0 2 643 180 0 0 0 chr12 7668649 7668669 -113588861 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 2 643 303 289 57 51 chr12 7668669 7668826 -113588704 + HAL1-3A_ME LINE L1 2284 2441 -417 2 643 710 167 36 0 chr12 7670104 7670242 -113587288 - URR1B DNA MER1_type 0 225 83 2 643 376 248 90 39 chr12 7670105 7670260 -113587270 + CYRA11_Mm Unknown Y-chromosome 172 334 -283 2 643 1046 254 126 9 chr12 7670479 7670598 -113586932 + ORR1C2 LTR MaLR 3 130 -254 2 643 1112 95 7 0 chr12 7670598 7670745 -113586785 + B1_Mus1 SINE Alu 1 148 0 2 643 1046 254 126 9 chr12 7670745 7670967 -113586563 + ORR1C2 LTR MaLR 131 383 -1 2 643 546 255 231 49 chr12 7671026 7671273 -113586257 + B4A SINE B4 1 292 0 2 643 288 278 114 22 chr12 7671462 7671646 -113585884 - Arthur1 DNA Tip100 -7 3940 3740 2 643 398 324 60 55 chr12 7672238 7672437 -113585093 - Arthur1 DNA Tip100 -3747 200 1 2 643 938 235 97 11 chr12 7672970 7673237 -113584293 + B4A SINE B4 1 290 -2 2 643 345 64 0 21 chr12 7673252 7673300 -113584230 + HAL1-3A_ME LINE L1 1976 2022 -836 2 643 334 300 11 11 chr12 7673442 7673533 -113583997 - MamRep137 DNA TcMar? -349 95 5 2 643 205 371 59 0 chr12 7674177 7674284 -113583246 - L2a LINE L2 -1 3425 3259 2 643 263 350 49 14 chr12 7675415 7675557 -113581973 + MIRb SINE MIR 20 166 -102 2 643 455 324 43 53 chr12 7676087 7676387 -113581143 - ERVL-B4-int LTR ERVL -3051 2663 2367 2 643 276 213 0 0 chr12 7676877 7676938 -113580592 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 643 905 301 67 24 chr12 7677134 7677508 -113580022 + L3 LINE CR1 3349 3738 -751 2 643 873 314 42 19 chr12 7677998 7678258 -113579272 + B4 SINE B4 23 288 -4 2 643 219 215 30 15 chr12 7678366 7678432 -113579098 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 2 643 379 324 42 7 chr12 7678458 7678601 -113578929 + MIR SINE MIR 31 178 -84 2 643 1004 295 62 24 chr12 7679215 7679683 -113577847 + Lx9 LINE L1 7094 7579 -65 2 643 976 261 65 48 chr12 7681777 7682071 -113575459 - MTE2a LTR MaLR 0 379 81 2 643 1136 323 21 28 chr12 7682076 7682646 -113574884 + Lx8 LINE L1 6905 7470 -3 2 643 393 291 25 17 chr12 7682759 7682878 -113574652 - MTE2a LTR MaLR -299 120 1 2 643 210 37 0 0 chr12 7683754 7683781 -113573749 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 643 477 0 0 0 chr12 7685138 7685191 -113572339 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 643 327 292 246 14 chr12 7686984 7687199 -113570331 + MLT2F LTR ERVL 313 577 -86 2 643 531 176 0 0 chr12 7687567 7687692 -113569838 + CT-rich Low_complexity Low_complexity 1 125 0 2 643 357 136 0 0 chr12 7687691 7687757 -113569773 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 643 589 81 50 35 chr12 7687873 7688014 -113569516 + (TATG)n Simple_repeat Simple_repeat 3 145 0 2 643 261 0 0 0 chr12 7688446 7688475 -113569055 + (A)n Simple_repeat Simple_repeat 1 29 0 2 643 998 205 132 38 chr12 7689782 7690071 -113567459 - MTE2a LTR MaLR -1 378 63 2 643 730 244 31 0 chr12 7690076 7690236 -113567294 + RMER19C LTR ERVK 447 611 0 2 643 231 237 0 17 chr12 7690263 7690323 -113567207 - MTE2a LTR MaLR -318 61 3 2 643 620 278 44 19 chr12 7691723 7691881 -113565649 + RSINE1 SINE B4 2 163 -2 2 643 1037 283 71 25 chr12 7692350 7692600 -113564930 + MTE2a LTR MaLR 17 279 -100 2 643 1964 170 46 78 chr12 7692600 7692904 -113564626 - MTC LTR MaLR 0 421 104 2 643 1322 104 119 0 chr12 7692904 7693106 -113564424 - URR1A DNA MER1_type 0 226 1 2 643 1964 170 46 78 chr12 7693106 7693156 -113564374 - MTC LTR MaLR -318 103 75 2 643 1233 34 0 7 chr12 7693156 7693304 -113564226 - B1_Mus2 SINE Alu 0 147 1 2 643 1964 170 46 78 chr12 7693304 7693383 -113564147 - MTC LTR MaLR -347 74 2 2 643 389 247 10 30 chr12 7693384 7693484 -113564046 + MTE2a LTR MaLR 282 379 0 2 643 270 0 0 0 chr12 7695164 7695194 -113562336 + (CATA)n Simple_repeat Simple_repeat 4 33 0 2 643 243 0 0 0 chr12 7695222 7695249 -113562281 + (CATA)n Simple_repeat Simple_repeat 3 29 0 2 643 297 364 17 57 chr12 7695313 7695488 -113562042 + L2a LINE L2 2205 2372 -1047 2 643 718 273 211 3 chr12 7695663 7695960 -113561570 + MTE2b LTR MaLR 21 379 0 2 643 241 284 0 0 chr12 7696060 7696148 -113561382 + L1MB7 LINE L1 4321 4408 -1738 2 643 292 200 143 23 chr12 7696310 7696443 -113561087 + L1MB7 LINE L1 5631 5779 -405 2 643 270 294 28 0 chr12 7696457 7696566 -113560964 + L1MB7 LINE L1 5830 5941 -243 2 643 229 355 18 68 chr12 7696824 7696987 -113560543 + L2a LINE L2 3225 3379 -47 2 643 2434 148 216 23 chr12 7697192 7697767 -113559763 - RMER6C LTR ERVK 0 690 5 2 643 875 46 0 0 chr12 7697775 7697884 -113559646 + B1_Mm SINE Alu 37 145 -2 2 643 522 356 55 14 chr12 7698001 7698313 -113559217 - ORR1E LTR MaLR -12 367 23 2 643 324 0 0 0 chr12 7699911 7699947 -113557583 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 643 391 348 101 14 chr12 7700033 7700240 -113557290 - MER89 LTR ERV1 0 559 335 2 643 299 330 34 0 chr12 7700328 7700416 -113557114 - MER89 LTR ERV1 -460 99 9 2 643 654 297 132 0 chr12 7701029 7701278 -113556252 + B4A SINE B4 1 282 -10 2 643 225 289 55 27 chr12 7701466 7701612 -113555918 - L1M5 LINE L1 -345 5779 5630 2 643 610 277 7 0 chr12 7701661 7701802 -113555728 - ID_B1 SINE B4 -1 223 82 2 643 299 65 22 0 chr12 7701840 7701886 -113555644 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 643 488 295 0 9 chr12 7701890 7702003 -113555527 - RSINE1 SINE B4 -32 133 22 2 643 2679 41 0 50 chr12 7702003 7702364 -113555166 - L1Md_F3 LINE L1 -11 6573 6231 2 643 192 184 0 0 chr12 7702801 7702850 -113554680 + T-rich Low_complexity Low_complexity 1 49 0 2 643 518 324 11 17 chr12 7703356 7703535 -113553995 + MER5B DNA MER1_type 1 178 0 2 643 186 271 50 17 chr12 7703536 7703596 -113553934 - MER5A DNA MER1_type 0 189 128 2 643 234 306 0 0 chr12 7703622 7703684 -113553846 - MER5A DNA MER1_type -73 116 55 2 643 180 111 0 0 chr12 7704012 7704039 -113553491 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 643 407 283 58 7 chr12 7704076 7704215 -113553315 - RSINE1 SINE B4 -17 148 3 2 643 192 239 0 21 chr12 7704841 7704888 -113552642 - MIRm SINE MIR 0 276 231 2 643 333 326 74 17 chr12 7706459 7706690 -113550840 + L1MB7 LINE L1 5809 6052 -132 2 643 1244 109 58 26 chr12 7706715 7706941 -113550589 + L1_Mus3 LINE L1 6398 6630 -8 2 643 29 0 0 0 chr12 7706991 7707020 -113550510 + AT_rich Low_complexity Low_complexity 1 29 0 2 643 1463 294 50 16 chr12 7707244 7707759 -113549771 + Lx8 LINE L1 6198 6730 -743 2 643 2085 227 17 5 chr12 7707761 7708168 -113549362 + MTD LTR MaLR 1 412 -7 2 643 483 148 139 0 chr12 7708176 7708277 -113549253 + Lx8 LINE L1 6749 6863 -610 2 643 182 118 29 0 chr12 7708874 7708908 -113548622 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 643 345 75 0 0 chr12 7708912 7708965 -113548565 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 2 643 567 235 61 17 chr12 7708969 7709263 -113548267 + L1M5 LINE L1 3088 3394 -2752 2 643 1148 276 71 12 chr12 7709816 7710237 -113547293 + Lx8 LINE L1 6580 7025 -448 2 643 860 287 62 0 chr12 7710262 7710506 -113547024 + Lx8 LINE L1 7079 7337 -136 2 643 929 314 95 9 chr12 7711479 7711804 -113545726 + MTE2b LTR MaLR 1 353 -26 2 643 508 267 61 8 chr12 7711914 7712046 -113545484 + B1_Mus1 SINE Alu 2 140 -8 3 643 281 47 0 23 chr12 7712048 7712092 -113545438 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 643 241 333 104 0 chr12 7712608 7712752 -113544778 - Tigger15a DNA TcMar -273 442 284 3 643 186 293 16 101 chr12 7713424 7713553 -113543977 - MIR SINE MIR -36 226 109 3 643 195 235 0 0 chr12 7716808 7716859 -113540671 + CT-rich Low_complexity Low_complexity 3 53 0 3 643 3396 188 46 6 chr12 7718064 7718345 -113539185 + RMER6D LTR ERVK 41 344 -376 3 643 1039 89 6 6 chr12 7718345 7718503 -113539027 + (GGA)n Simple_repeat Simple_repeat 1 158 0 3 643 3396 188 46 6 chr12 7718503 7718874 -113538656 + RMER6D LTR ERVK 345 719 -1 3 643 591 269 50 62 chr12 7718965 7718993 -113538537 + CYRA11_Mm Unknown Y-chromosome 139 376 -240 3 643 1409 136 14 0 chr12 7718993 7719206 -113538324 - URR1A DNA MER1_type 0 226 11 3 643 615 327 113 44 chr12 7719481 7720048 -113537482 + Charlie5 DNA MER1_type 1 606 -2018 3 643 554 298 65 80 chr12 7720404 7720791 -113536739 + Charlie5 DNA MER1_type 588 968 -1656 3 643 416 161 12 0 chr12 7720814 7720895 -113536635 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 643 521 68 14 0 chr12 7720963 7721037 -113536493 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 643 727 294 51 36 chr12 7721042 7721433 -113536097 + Charlie5 DNA MER1_type 1027 1423 -1201 3 643 1477 118 190 69 chr12 7721571 7721861 -113535669 - ORR1A3 LTR MaLR -1 325 1 3 643 275 257 169 17 chr12 7722334 7722512 -113535018 - Charlie5 DNA MER1_type -93 2531 2327 3 643 220 27 54 0 chr12 7722540 7722577 -113534953 + (TTATA)n Simple_repeat Simple_repeat 1 39 0 3 643 1500 286 71 20 chr12 7722579 7722726 -113534804 - Charlie5 DNA MER1_type -263 2361 2203 3 643 360 0 0 0 chr12 7722726 7722766 -113534764 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 3 643 1500 286 71 20 chr12 7722766 7723325 -113534205 - Charlie5 DNA MER1_type -422 2202 1620 3 643 470 356 60 17 chr12 7723567 7723801 -113533729 - HERV16-int LTR ERVL -2971 2025 1782 3 643 259 227 25 51 chr12 7723900 7723979 -113533551 + B4A SINE B4 2 78 -214 3 643 369 0 0 0 chr12 7724117 7724158 -113533372 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 643 309 253 7 14 chr12 7724332 7724480 -113533050 + (CATATA)n Simple_repeat Simple_repeat 1 147 0 3 643 189 175 0 0 chr12 7724596 7724636 -113532894 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 643 645 216 14 7 chr12 7724661 7724801 -113532729 - L1MA4 LINE L1 -370 5930 5790 3 643 395 300 127 65 chr12 7724801 7725076 -113532454 + B4A SINE B4 1 292 0 3 643 333 0 0 0 chr12 7725101 7725138 -113532392 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 3 643 516 248 43 45 chr12 7725181 7725343 -113532187 - B4 SINE B4 -128 164 2 3 643 627 51 0 0 chr12 7725804 7725883 -113531647 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 3 643 245 151 19 0 chr12 7726608 7726661 -113530869 + (CAT)n Simple_repeat Simple_repeat 3 56 0 3 643 218 184 0 0 chr12 7726746 7726784 -113530746 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 643 458 47 0 30 chr12 7726993 7727059 -113530471 + (CCCCCT)n Simple_repeat Simple_repeat 6 69 0 3 643 946 145 6 11 chr12 7727059 7727240 -113530290 + CT-rich Low_complexity Low_complexity 1 180 0 3 643 207 235 0 0 chr12 7727262 7727313 -113530217 + CT-rich Low_complexity Low_complexity 4 54 0 3 643 600 233 26 46 chr12 7727415 7727568 -113529962 + B1_Mur4 SINE Alu 1 150 0 3 643 260 292 22 22 chr12 7727861 7727952 -113529578 + CT-rich Low_complexity Low_complexity 1 91 0 3 643 4131 68 0 47 chr12 7728000 7728555 -113528975 + L1_Mus2 LINE L1 6038 6566 0 3 643 321 26 0 0 chr12 7729149 7729187 -113528343 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 643 1313 133 71 0 chr12 7730353 7730564 -113526966 - URR1A DNA MER1_type 0 226 1 3 643 438 337 43 39 chr12 7730932 7730955 -113526575 - B3 SINE B2 -8 208 186 3 643 2022 157 34 52 chr12 7730955 7731338 -113526192 + ORR1C1 LTR MaLR 3 378 0 3 643 613 294 23 23 chr12 7731338 7731521 -113526009 - B3A SINE B2 -31 185 1 3 643 197 336 79 16 chr12 7732306 7732433 -113525097 - MIR3 SINE MIR -36 172 38 3 643 499 303 79 21 chr12 7732461 7732741 -113524789 - Charlie16a DNA MER1_type -11 331 36 3 644 682 269 31 10 chr12 7733697 7733892 -113523638 + MLT2B4 LTR ERVL 1 199 -357 3 644 769 98 14 0 chr12 7733898 7734041 -113523489 + (TC)n Simple_repeat Simple_repeat 2 146 0 3 644 204 125 0 0 chr12 7735145 7735177 -113522353 + (T)n Simple_repeat Simple_repeat 1 32 0 3 644 3712 81 2 0 chr12 7735181 7735661 -113521869 - L1_Mus1 LINE L1 -1 6566 6086 3 644 686 257 321 32 chr12 7739629 7739963 -113517567 + RLTR20B1 LTR ERVK 51 469 -94 3 644 225 0 0 0 chr12 7739963 7739988 -113517542 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 644 341 254 142 110 chr12 7739988 7740059 -113517471 + RLTR20B1 LTR ERVK 470 561 -2 3 644 373 231 37 0 chr12 7740084 7740192 -113517338 + RMER30 DNA MER1_type 16 127 -75 3 644 371 314 29 0 chr12 7740258 7740360 -113517170 - RSINE1 SINE B4 -58 107 3 3 644 1053 219 0 42 chr12 7742142 7742357 -113515173 + B3 SINE B2 1 206 -10 3 644 1261 103 38 0 chr12 7744530 7744685 -113512845 + B2_Mm2 SINE B2 1 162 -33 3 644 495 0 0 0 chr12 7744685 7744740 -113512790 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 644 1261 103 38 0 chr12 7744740 7744768 -113512762 + B2_Mm2 SINE B2 163 190 -5 3 644 294 236 14 0 chr12 7745119 7745191 -113512339 - LTR40c LTR ERVL -9 453 381 3 644 495 298 40 15 chr12 7745326 7745527 -113512003 - LTR40c LTR ERVL -247 218 13 3 644 618 51 0 0 chr12 7745752 7745830 -113511700 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 644 234 0 0 0 chr12 7746566 7746592 -113510938 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 644 513 32 0 0 chr12 7747564 7747627 -113509903 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 644 186 43 0 0 chr12 7748403 7748426 -113509104 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 644 289 244 101 13 chr12 7748427 7748506 -113509024 - RSINE1 SINE B4 -24 141 56 3 644 674 268 151 28 chr12 7749316 7749605 -113507925 + ORR1E LTR MaLR 44 376 -3 3 644 213 171 0 79 chr12 7750007 7750083 -113507447 + (CATG)n Simple_repeat Simple_repeat 1 70 0 3 644 631 339 52 0 chr12 7751726 7751918 -113505612 - ID_B1 SINE B4 -8 216 15 3 644 22 0 0 0 chr12 7752911 7752933 -113504597 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 407 222 154 34 chr12 7754134 7754283 -113503247 + B3A SINE B2 32 198 0 3 644 290 277 0 0 chr12 7754359 7754424 -113503106 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 644 32 0 0 23 chr12 7754522 7754546 -113502984 + AT_rich Low_complexity Low_complexity 1 24 0 3 644 885 213 9 80 chr12 7754546 7754771 -113502759 + B3 SINE B2 2 210 -6 3 644 32 0 0 23 chr12 7754771 7754789 -113502741 + AT_rich Low_complexity Low_complexity 1 18 0 3 644 352 322 11 100 chr12 7755423 7755613 -113501917 + B4A SINE B4 3 175 -117 3 644 189 0 0 0 chr12 7755741 7755762 -113501768 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 3 644 214 194 0 29 chr12 7756305 7756374 -113501156 + CT-rich Low_complexity Low_complexity 3 69 0 3 644 1369 251 43 16 chr12 7757292 7757661 -113499869 - MTEb LTR MaLR 0 379 1 3 644 206 0 0 65 chr12 7758074 7758105 -113499425 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 644 1122 251 36 21 chr12 7758122 7758455 -113499075 - RLTR17 LTR ERVK -73 619 282 3 644 335 358 21 17 chr12 7758637 7758855 -113498675 + MIR3 SINE MIR 12 235 -33 3 644 219 139 0 0 chr12 7762055 7762091 -113495439 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 644 459 320 76 68 chr12 7763697 7763948 -113493582 + B4 SINE B4 20 272 -20 3 644 189 0 0 0 chr12 7765536 7765557 -113491973 + (TATG)n Simple_repeat Simple_repeat 3 23 0 3 644 507 45 0 0 chr12 7765557 7765622 -113491908 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 644 271 353 108 47 chr12 7765645 7765859 -113491671 + B4 SINE B4 3 229 -63 3 644 708 274 32 18 chr12 7765868 7766087 -113491443 - ORR1D2 LTR MaLR -2 368 147 3 644 9181 6 0 0 chr12 7767619 7768668 -113488862 - L1Md_T LINE L1 0 6582 5534 3 644 360 39 0 0 chr12 7768755 7768807 -113488723 + L1_Mus1 LINE L1 6516 6567 0 3 644 231 188 0 0 chr12 7769780 7769828 -113487702 + CT-rich Low_complexity Low_complexity 3 50 0 3 644 548 336 111 8 chr12 7769987 7770239 -113487291 - Lx8 LINE L1 -143 7330 7053 3 644 366 23 0 0 chr12 7770456 7770499 -113487031 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 644 483 87 0 0 chr12 7771198 7771267 -113486263 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 644 320 145 52 22 chr12 7771267 7771401 -113486129 + (TA)n Simple_repeat Simple_repeat 1 138 0 3 644 372 352 33 66 chr12 7772652 7772926 -113484604 + LTR16D2 LTR ERVL 240 504 -68 3 644 545 0 15 0 chr12 7775029 7775094 -113482436 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 644 466 155 43 0 chr12 7775711 7775827 -113481703 + CT-rich Low_complexity Low_complexity 2 122 0 3 644 856 277 28 79 chr12 7776763 7777116 -113480414 - MTE2a LTR MaLR -31 348 14 3 644 673 315 23 19 chr12 7777299 7777555 -113479975 - RMER15 LTR ERVL -58 517 261 3 644 1032 281 57 37 chr12 7777869 7778201 -113479329 + ORR1D2 LTR MaLR 6 353 -6 3 644 201 333 0 0 chr12 7779630 7779681 -113477849 - L3 LINE CR1 -107 4382 4332 3 644 295 225 6 45 chr12 7779881 7780058 -113477472 + (CATA)n Simple_repeat Simple_repeat 3 172 0 3 644 237 279 12 25 chr12 7780080 7780101 -113477429 + L1MD2 LINE L1 6136 6156 -203 3 644 423 0 0 0 chr12 7780101 7780148 -113477382 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 644 237 279 12 25 chr12 7780148 7780207 -113477323 + L1MD2 LINE L1 6157 6215 -144 3 644 423 0 0 0 chr12 7780290 7780337 -113477193 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 3 644 456 375 18 5 chr12 7780374 7780591 -113476939 - MIR SINE MIR -12 250 31 3 644 769 298 62 24 chr12 7781664 7781953 -113475577 + MLT1A0 LTR MaLR 57 356 -9 3 644 846 249 24 0 chr12 7783606 7783811 -113473719 - B3 SINE B2 -5 211 2 3 644 26 0 0 0 chr12 7787699 7787725 -113469805 + AT_rich Low_complexity Low_complexity 1 26 0 3 644 1277 152 33 0 chr12 7788278 7788489 -113469041 + URR1A DNA MER1_type 1 218 -8 4 644 484 283 52 80 chr12 7788506 7788756 -113468774 + MLT2C2 LTR ERVL 181 423 -41 4 644 210 143 0 0 chr12 7788760 7788795 -113468735 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4 644 439 346 85 28 chr12 7790499 7790957 -113466573 - L1M5 LINE L1 -1492 4654 4171 4 644 193 311 51 102 chr12 7791126 7791362 -113466168 - L2c LINE L2 -20 3367 3144 4 644 276 165 37 25 chr12 7791649 7791730 -113465800 + (TATG)n Simple_repeat Simple_repeat 1 82 0 4 644 251 239 15 0 chr12 7791871 7791938 -113465592 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 4 644 250 209 87 43 chr12 7791942 7792057 -113465473 - Lx9 LINE L1 -124 7520 7401 4 644 857 264 103 9 chr12 7792445 7792678 -113464852 + MTEa LTR MaLR 33 287 -92 4 644 855 176 0 0 chr12 7792864 7792995 -113464535 + B1_Mus2 SINE Alu 9 139 -8 4 644 375 78 0 0 chr12 7792995 7793046 -113464484 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 644 821 349 49 33 chr12 7793046 7793653 -113463877 - MER20B DNA MER1_type -131 652 36 4 644 1450 81 11 0 chr12 7794213 7794399 -113463131 - B2_Mm1a SINE B2 -5 188 1 4 644 775 179 223 0 chr12 7794602 7794786 -113462744 - URR1B DNA MER1_type 0 225 1 4 644 369 361 30 48 chr12 7795330 7795496 -113462034 - RSINE1 SINE B4 0 165 3 4 644 838 313 95 14 chr12 7795781 7796128 -113461402 + MTEa LTR MaLR 1 375 -4 4 644 836 236 19 58 chr12 7796352 7796559 -113460971 + Lx6 LINE L1 7260 7458 -2 4 644 524 287 9 0 chr12 7796660 7796768 -113460762 - PB1D10 SINE Alu -8 109 1 4 644 203 233 10 0 chr12 7796871 7796974 -113460556 + (TA)n Simple_repeat Simple_repeat 1 104 0 4 644 543 279 30 35 chr12 7797198 7797428 -113460102 - L1MA4 LINE L1 -376 5924 5696 4 644 349 227 13 51 chr12 7797482 7797508 -113460022 - RSINE1 SINE B4 -77 88 65 4 644 2563 186 73 126 chr12 7797508 7798153 -113459377 + RMER19C LTR ERVK 1 611 0 4 644 349 227 13 51 chr12 7798153 7798205 -113459325 - RSINE1 SINE B4 -101 64 13 4 644 449 272 64 21 chr12 7798216 7798429 -113459101 - L1MA4 LINE L1 -694 5606 5326 4 644 286 219 0 15 chr12 7798419 7798484 -113459046 + L1_Rod LINE L1 5154 5217 -630 4 644 333 381 0 0 chr12 7798488 7798572 -113458958 + PB1D7 SINE Alu 1 84 -36 4 644 792 323 27 50 chr12 7798689 7798986 -113458544 - B4A SINE B4 0 292 3 4 644 451 99 24 24 chr12 7799133 7799216 -113458314 + (CATA)n Simple_repeat Simple_repeat 2 84 0 4 644 437 335 118 12 chr12 7799354 7799786 -113457744 - L1M5 LINE L1 -393 5731 5254 4 644 23 33 0 0 chr12 7799978 7800008 -113457522 + AT_rich Low_complexity Low_complexity 1 30 0 4 644 622 250 7 7 chr12 7800333 7800470 -113457060 - B1F SINE Alu -1 148 12 4 644 607 274 44 0 chr12 7801815 7801950 -113455580 + RSINE1 SINE B4 5 145 -20 4 644 258 344 30 113 chr12 7801950 7802018 -113455512 + B3A SINE B2 4 189 -9 4 644 1534 82 5 5 chr12 7802266 7802461 -113455069 - B2_Mm2 SINE B2 0 195 1 4 644 338 353 88 41 chr12 7802474 7802769 -113454761 - L2 LINE L2 -512 2907 2599 4 644 459 279 133 30 chr12 7802812 7802857 -113454673 + L2 LINE L2 307 363 -3056 4 644 1255 215 0 0 chr12 7802857 7803080 -113454450 - URR1B DNA MER1_type -1 224 2 4 644 459 279 133 30 chr12 7803080 7803297 -113454233 + L2 LINE L2 364 596 -2823 4 644 22 0 0 0 chr12 7803471 7803493 -113454037 + AT_rich Low_complexity Low_complexity 1 22 0 4 644 626 281 47 0 chr12 7803504 7803675 -113453855 - B3A SINE B2 -18 180 2 4 644 599 306 133 25 chr12 7804609 7804931 -113452599 - MLT2C2 LTR ERVL -107 357 1 4 644 691 305 98 42 chr12 7805018 7805932 -113451598 + L1M5 LINE L1 4621 5587 -577 4 644 234 327 68 56 chr12 7805936 7806098 -113451432 - MTEa LTR MaLR -17 362 199 4 644 471 51 0 0 chr12 7806708 7806767 -113450763 + B1_Mm SINE Alu 80 138 -9 4 644 1242 87 0 0 chr12 7806768 7806941 -113450589 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 4 644 36265 35 0 0 chr12 7808665 7814322 -113443208 + L1Md_T LINE L1 1 5589 -297 4 644 9495 8 0 4 chr12 7814322 7815322 -113442208 + L1Md_T LINE L1 5590 6585 0 4 644 1638 171 118 32 chr12 7816118 7816492 -113441038 + MTD LTR MaLR 2 407 -12 4 644 226 378 125 21 chr12 7817187 7817379 -113440151 + MIRb SINE MIR 34 249 -19 4 644 400 303 159 37 chr12 7817635 7817663 -113439867 - MLT1A0 LTR MaLR -56 309 286 4 644 2032 107 113 0 chr12 7817663 7817954 -113439576 - ORR1A3 LTR MaLR -2 324 1 4 644 400 303 159 37 chr12 7817954 7818196 -113439334 - MLT1A0 LTR MaLR -80 285 6 4 644 398 295 0 62 chr12 7818621 7818733 -113438797 + PB1 SINE Alu 1 105 -22 4 644 606 288 65 110 chr12 7819186 7819432 -113438098 + B4A SINE B4 53 287 -5 4 644 207 100 0 0 chr12 7819709 7819739 -113437791 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 4 644 423 0 0 0 chr12 7819868 7819915 -113437615 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 644 455 296 101 19 chr12 7821346 7821553 -113435977 + L2a LINE L2 2741 2964 -455 4 644 356 329 178 24 chr12 7821593 7821886 -113435644 + L2a LINE L2 3035 3372 -54 4 644 462 280 75 154 chr12 7821976 7822033 -113435497 - MTD LTR MaLR 0 379 326 4 644 1652 161 34 4 chr12 7822033 7822302 -113435228 + Lx5 LINE L1 6771 7047 -3 4 644 1457 223 93 3 chr12 7822302 7822641 -113434889 - MTD LTR MaLR -44 375 12 4 644 207 0 0 0 chr12 7824219 7824242 -113433288 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 644 380 231 26 0 chr12 7824473 7824551 -113432979 + ID4 SINE ID 2 81 -2 4 644 295 268 20 20 chr12 7825183 7825282 -113432248 + GA-rich Low_complexity Low_complexity 2 100 0 4 644 1357 139 81 0 chr12 7825686 7825895 -113431635 - URR1A DNA MER1_type 0 226 1 4 644 2452 159 31 12 chr12 7826172 7826585 -113430945 - MTC LTR MaLR 0 421 1 4 644 615 268 21 14 chr12 7826618 7826762 -113430768 + LTR40c LTR ERVL 70 214 -251 4 644 500 373 42 29 chr12 7826804 7827044 -113430486 + MER45B DNA Tip100 26 268 -772 4 644 989 239 43 113 chr12 7827130 7827502 -113430028 - MTE2a LTR MaLR -31 348 3 4 644 1039 305 65 17 chr12 7827503 7827920 -113429610 + MER45B DNA Tip100 354 790 -250 4 644 1839 186 3 10 chr12 7827989 7828288 -113429242 - MTC LTR MaLR -2 419 123 4 644 2872 72 0 0 chr12 7828288 7828635 -113428895 + L1_Mus1 LINE L1 6218 6564 -3 4 644 1839 186 3 10 chr12 7828635 7828649 -113428881 - MTC LTR MaLR -299 122 108 4 644 684 0 0 0 chr12 7828657 7828733 -113428797 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 4 644 1273 115 5 45 chr12 7828744 7828945 -113428585 + B2_Mm1t SINE B2 1 193 0 4 644 3185 153 12 65 chr12 7828960 7829540 -113427990 + RLTR20A2 LTR ERVK 1 549 -29 4 644 530 196 56 0 chr12 7829551 7829658 -113427872 - MTC LTR MaLR -308 113 1 4 644 306 258 29 58 chr12 7829658 7829760 -113427770 + LTR40c LTR ERVL 360 458 -4 4 644 341 58 0 19 chr12 7829851 7829904 -113427626 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 4 644 1144 230 5 0 chr12 7830610 7830823 -113426707 + B3 SINE B2 1 214 -2 4 644 207 204 0 0 chr12 7832031 7832075 -113425455 + T-rich Low_complexity Low_complexity 1 44 0 4 644 1085 243 58 15 chr12 7832080 7832339 -113425191 - Lx5 LINE L1 -7 7043 6774 4 644 700 149 0 0 chr12 7832359 7832466 -113425064 - B1_Mur4 SINE Alu 0 150 44 4 644 1169 128 11 24 chr12 7832940 7833142 -113424388 - LTRIS2 LTR ERV1 0 564 316 4 644 271 262 58 0 chr12 7833733 7833836 -113423694 - L1MA6 LINE L1 -27 6273 6165 4 644 223 308 0 15 chr12 7834392 7834458 -113423072 + GA-rich Low_complexity Low_complexity 4 68 0 4 644 216 0 0 0 chr12 7834463 7834487 -113423043 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 644 396 0 0 0 chr12 7834487 7834530 -113423000 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 644 234 0 0 0 chr12 7834656 7834682 -113422848 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 644 21 0 0 0 chr12 7834982 7835003 -113422527 + AT_rich Low_complexity Low_complexity 1 21 0 4 644 452 335 92 39 chr12 7835332 7835767 -113421763 - L1M5 LINE L1 -2422 3724 3267 4 644 271 289 83 23 chr12 7835919 7836135 -113421395 - L1MD LINE L1 -2948 3198 2970 4 644 356 369 96 36 chr12 7836155 7836622 -113420908 - L1M5 LINE L1 -3212 2934 2440 4 644 371 286 88 55 chr12 7836631 7836956 -113420574 + L1ME3B LINE L1 5577 5915 -325 4 644 28 79 0 0 chr12 7837053 7837116 -113420414 + AT_rich Low_complexity Low_complexity 1 63 0 4 644 241 294 68 0 chr12 7837322 7837485 -113420045 + L1MC LINE L1 2156 2329 -3817 4 644 359 280 115 52 chr12 7837745 7838328 -113419202 + L1MD LINE L1 2656 3275 -2871 4 644 312 27 0 0 chr12 7838372 7838409 -113419121 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 644 478 268 82 100 chr12 7839285 7839505 -113418025 - B3 SINE B2 0 216 1 4 644 189 154 0 0 chr12 7840134 7840173 -113417357 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 4 644 398 264 28 35 chr12 7840435 7840580 -113416950 + B1F SINE Alu 1 144 -5 4 644 561 307 138 24 chr12 7840899 7841239 -113416291 + MTEb LTR MaLR 1 379 0 4 644 256 127 36 0 chr12 7842091 7842146 -113415384 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 644 200 323 183 0 chr12 7842597 7842690 -113414840 + L2c LINE L2 3272 3381 -6 4 644 216 135 0 0 chr12 7843329 7843366 -113414164 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 644 608 244 0 53 chr12 7843398 7843567 -113413963 + RSINE1 SINE B4 4 163 -2 4 644 258 192 0 0 chr12 7844174 7844226 -113413304 + (ATG)n Simple_repeat Simple_repeat 3 54 0 4 644 511 312 65 43 chr12 7844314 7844498 -113413032 + B4 SINE B4 104 291 -1 4 644 441 0 0 0 chr12 7844515 7844564 -113412966 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 644 5809 35 32 6 chr12 7844950 7845663 -113411867 + L1Md_T LINE L1 5851 6582 0 4 644 3343 128 23 6 chr12 7845679 7846204 -113411326 + Lx4A LINE L1 6522 7055 -3 4 644 28 0 0 0 chr12 7846211 7846239 -113411291 + AT_rich Low_complexity Low_complexity 1 28 0 4 644 957 261 51 91 chr12 7846391 7846742 -113410788 - MTEa LTR MaLR -43 336 3 5 644 450 0 0 0 chr12 7846897 7846947 -113410583 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 644 26 0 0 0 chr12 7848232 7848258 -113409272 + AT_rich Low_complexity Low_complexity 1 26 0 5 644 1008 213 5 41 chr12 7848278 7848474 -113409056 - B3 SINE B2 -27 189 1 5 644 198 0 0 0 chr12 7848502 7848524 -113409006 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 5 644 512 228 96 0 chr12 7848532 7848668 -113408862 - B1_Mur2 SINE Alu 0 149 1 5 644 207 0 0 0 chr12 7849395 7849418 -113408112 + (A)n Simple_repeat Simple_repeat 1 23 0 5 644 615 188 98 0 chr12 7851702 7851814 -113405716 + B1_Mus2 SINE Alu 1 123 -24 5 644 720 215 29 7 chr12 7853173 7853309 -113404221 + B1_Mur2 SINE Alu 8 146 -3 5 644 12853 72 5 4 chr12 7853427 7854905 -113402625 + L1Md_F2 LINE L1 3790 5275 -608 5 644 2102 13 0 0 chr12 7854905 7855144 -113402386 + L1Md_A LINE L1 6343 6581 -1 5 644 12853 72 5 4 chr12 7855144 7855460 -113402070 + L1Md_F2 LINE L1 5276 5585 -298 5 644 7646 65 2 15 chr12 7855461 7856464 -113401066 + L1Md_F2 LINE L1 5587 6576 -6 5 644 6302 61 1 2 chr12 7856963 7857802 -113399728 - L1_Mus1 LINE L1 0 6567 5730 5 644 789 67 0 70 chr12 7857803 7857932 -113399598 - L1_Mus1 LINE L1 -4 6563 6444 5 644 845 44 0 9 chr12 7857948 7858063 -113399467 + L1_Mm LINE L1 2120 2233 -3650 5 644 501 286 21 14 chr12 7858824 7858966 -113398564 - B1F SINE Alu -6 143 1 5 644 701 251 114 0 chr12 7858981 7859156 -113398374 + B3A SINE B2 1 195 -3 5 644 302 387 117 39 chr12 7861549 7862146 -113395384 - L2 LINE L2 -434 2985 2342 5 644 529 272 51 97 chr12 7862562 7862778 -113394752 - ORR1E LTR MaLR -153 206 1 5 644 410 195 212 0 chr12 7863079 7863192 -113394338 - ORR1C1 LTR MaLR 0 378 242 5 644 1268 152 166 0 chr12 7863970 7864266 -113393264 + ORR1B1 LTR MaLR 11 394 0 5 645 2412 77 12 9 chr12 7864654 7864982 -113392548 - ORR1A4 LTR MaLR 0 329 1 5 645 565 235 112 49 chr12 7865381 7865667 -113391863 - L1MA9 LINE L1 -268 6044 5741 5 645 1148 263 89 43 chr12 7865667 7866016 -113391514 - ORR1D2 LTR MaLR -5 365 1 5 645 421 227 25 0 chr12 7866225 7866344 -113391186 + L1M2 LINE L1 4547 4668 -1472 5 645 580 241 15 22 chr12 7866352 7866488 -113391042 + ID_B1 SINE B4 86 220 -4 5 645 309 51 0 0 chr12 7868452 7868491 -113389039 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 5 645 658 168 0 18 chr12 7868497 7868606 -113388924 + B1_Mur4 SINE Alu 44 150 0 5 645 773 281 45 21 chr12 7868661 7868992 -113388538 + L1M2 LINE L1 4671 5009 -1134 5 645 376 274 84 26 chr12 7869021 7869212 -113388318 + L1M2 LINE L1 5139 5340 -803 5 645 313 348 108 14 chr12 7869285 7869520 -113388010 + L1ME3B LINE L1 5667 5922 -318 5 645 308 344 259 23 chr12 7869766 7870329 -113387201 + L1MEg LINE L1 217 912 -5330 5 645 573 328 78 43 chr12 7870412 7870609 -113386921 + L1MEg LINE L1 1070 1274 -4968 5 645 565 61 20 0 chr12 7870609 7870707 -113386823 + Lx3_Mus LINE L1 6910 7009 0 5 645 573 328 78 43 chr12 7870707 7870930 -113386600 + L1MEg LINE L1 1275 1505 -4737 5 645 598 251 96 57 chr12 7870968 7871145 -113386385 + MTEb LTR MaLR 35 218 -161 5 645 337 337 77 28 chr12 7871283 7871530 -113386000 + L1MEg LINE L1 2551 2809 -3337 5 645 1449 232 68 15 chr12 7871664 7871987 -113385543 - MTD LTR MaLR -7 412 73 5 645 3633 89 42 14 chr12 7871987 7872536 -113384994 + RMER17B LTR ERVK 1 554 -352 5 645 1697 84 24 4 chr12 7872536 7872787 -113384743 + L1_Mus2 LINE L1 6311 6566 0 5 645 1926 184 120 57 chr12 7872787 7872982 -113384548 + RMER17B LTR ERVK 521 676 -230 5 645 189 0 0 0 chr12 7872982 7873003 -113384527 + (CCA)n Simple_repeat Simple_repeat 1 21 0 5 645 1926 152 131 8 chr12 7873003 7873255 -113384275 + RMER17B LTR ERVK 668 957 -1 5 645 484 167 0 0 chr12 7873255 7873333 -113384197 - MTD LTR MaLR -341 78 1 5 645 324 268 189 43 chr12 7873496 7873612 -113383918 + L1MD3 LINE L1 6758 6895 -1100 5 645 1806 130 159 12 chr12 7873612 7873932 -113383598 - ORR1B2 LTR MaLR 0 367 1 5 645 324 268 189 43 chr12 7873932 7874096 -113383434 + L1MD3 LINE L1 6896 7079 -916 5 645 238 253 145 13 chr12 7875213 7875289 -113382241 + B1F2 SINE Alu 8 93 -56 5 645 34 0 0 0 chr12 7876745 7876779 -113380751 + AT_rich Low_complexity Low_complexity 1 34 0 5 645 593 236 159 11 chr12 7876788 7876964 -113380566 + B3A SINE B2 4 205 -11 5 645 726 330 101 49 chr12 7877770 7878117 -113379413 - MLT1G LTR MaLR -227 368 4 5 645 501 307 24 30 chr12 7878210 7878246 -113379284 + ID_B1 SINE B4 50 216 -8 5 645 527 267 30 8 chr12 7878246 7878378 -113379152 + B1F2 SINE Alu 7 141 -8 5 645 24 32 0 0 chr12 7878398 7878429 -113379101 + AT_rich Low_complexity Low_complexity 1 31 0 5 645 239 320 121 16 chr12 7878461 7878585 -113378945 - MLT1G-int LTR MaLR -178 1311 1175 5 645 244 238 53 70 chr12 7878951 7879052 -113378478 + PB1D7 SINE Alu 21 124 -3 5 645 465 19 0 0 chr12 7879748 7879802 -113377728 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 645 645 14 0 0 chr12 7879802 7879875 -113377655 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 645 333 0 0 0 chr12 7879875 7879911 -113377619 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 645 296 231 141 0 chr12 7880558 7880636 -113376894 + URR1B DNA MER1_type 40 128 -97 5 645 330 26 0 0 chr12 7880639 7880678 -113376852 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 645 2458 43 46 0 chr12 7880937 7881265 -113376265 - L1Md_F2 LINE L1 -475 6107 5765 5 645 378 0 0 0 chr12 7881373 7881415 -113376115 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 5 645 777 129 0 16 chr12 7881415 7881531 -113375999 - B1_Mur4 SINE Alu -13 137 22 5 645 388 239 99 18 chr12 7882071 7882182 -113375348 + PB1 SINE Alu 6 125 -2 5 645 1827 186 3 52 chr12 7882426 7882801 -113374729 - MTC-int LTR MaLR -865 393 38 5 645 4284 153 98 48 chr12 7882801 7883660 -113373870 - RMER19B LTR ERVK 0 902 1 5 645 881 196 0 0 chr12 7883700 7883853 -113373677 - MTC LTR MaLR 0 421 269 5 645 189 154 0 0 chr12 7884210 7884249 -113373281 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 5 645 294 287 93 25 chr12 7884251 7884369 -113373161 - B1F1 SINE Alu -1 148 23 5 645 22 0 0 0 chr12 7888837 7888859 -113368671 + AT_rich Low_complexity Low_complexity 1 22 0 5 645 572 266 8 0 chr12 7890837 7890961 -113366569 - RSINE1 SINE B4 -38 127 3 5 645 360 0 0 0 chr12 7890964 7891004 -113366526 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 5 645 2744 74 3 5 chr12 7892842 7893210 -113364320 + L1Md_F2 LINE L1 6202 6568 -14 5 645 809 71 167 0 chr12 7893480 7893606 -113363924 + B1_Mm SINE Alu 1 147 0 5 645 2469 78 86 111 chr12 7893929 7894416 -113363114 + IAPLTR2_Mm LTR ERVK 1 475 0 5 645 201 226 0 0 chr12 7894544 7894597 -113362933 + GA-rich Low_complexity Low_complexity 3 55 0 5 645 3393 196 122 30 chr12 7894850 7895727 -113361803 - RMER17B LTR ERVK 0 958 1 5 645 487 232 26 35 chr12 7895768 7895884 -113361646 + MER20 DNA MER1_type 19 133 -86 5 645 266 181 54 0 chr12 7896799 7896948 -113360582 + (TCTCTG)n Simple_repeat Simple_repeat 6 162 0 5 645 405 175 11 22 chr12 7896959 7897140 -113360390 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 5 645 387 196 0 0 chr12 7897153 7897306 -113360224 + (TCTG)n Simple_repeat Simple_repeat 2 154 0 5 645 340 193 12 12 chr12 7897355 7897528 -113360002 + (TCTG)n Simple_repeat Simple_repeat 2 174 0 5 645 210 136 45 0 chr12 7897541 7897585 -113359945 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 5 645 1415 294 209 13 chr12 7897597 7898518 -113359012 - Charlie1a DNA MER1_type 0 1455 351 5 645 518 98 12 0 chr12 7898518 7898600 -113358930 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 645 1415 294 209 13 chr12 7898600 7898614 -113358916 - Charlie1a DNA MER1_type -1105 350 337 5 645 463 224 89 28 chr12 7898687 7898866 -113358664 + Charlie1a DNA MER1_type 1261 1450 -5 5 645 203 133 0 0 chr12 7898881 7898911 -113358619 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 645 383 0 21 0 chr12 7898924 7898971 -113358559 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 645 341 331 68 0 chr12 7898974 7899107 -113358423 - Charlie1a DNA MER1_type -1126 329 188 5 645 702 261 30 88 chr12 7899197 7899429 -113358101 + B3A SINE B2 1 216 0 5 645 471 312 83 27 chr12 7899434 7900266 -113357264 + L1MB7 LINE L1 4944 5826 -358 5 645 550 280 131 0 chr12 7900328 7900503 -113357027 + B3 SINE B2 2 199 -17 5 645 1792 116 17 69 chr12 7900627 7901069 -113356461 - Lx3C LINE L1 -2 6979 6590 5 645 949 111 71 16 chr12 7901069 7901253 -113356277 + L1_Mur1 LINE L1 2959 3152 -2734 5 645 451 233 35 0 chr12 7902710 7902796 -113354734 + BC1_Mm scRNA scRNA 1 89 -63 5 645 3443 146 47 21 chr12 7903042 7903666 -113353864 + RLTR26 LTR ERVK 3 642 0 5 645 3164 132 188 26 chr12 7903672 7904482 -113353048 + RMER17B LTR ERVK 46 958 0 5 645 1166 261 55 40 chr12 7905532 7906058 -113351472 + L1MA4 LINE L1 5395 5928 -372 5 645 688 322 5 51 chr12 7906390 7906606 -113350924 + ID_B1 SINE B4 16 221 -3 5 645 324 70 0 0 chr12 7906611 7906654 -113350876 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 645 456 218 32 0 chr12 7906659 7906815 -113350715 + (TATG)n Simple_repeat Simple_repeat 2 162 0 5 645 409 334 85 57 chr12 7906818 7907348 -113350182 + L1ME3 LINE L1 5360 5904 -258 5 645 693 0 0 0 chr12 7907366 7907443 -113350087 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 5 645 353 348 37 37 chr12 7908977 7909165 -113348365 - L1M5 LINE L1 -2974 3172 2985 5 645 303 388 45 65 chr12 7909395 7909685 -113347845 + Charlie2a DNA MER1_type 53 336 -2525 5 645 438 201 206 6 chr12 7909797 7909957 -113347573 + MER53 DNA hAT 2 193 0 5 645 670 323 50 0 chr12 7911267 7911546 -113345984 + Lx8 LINE L1 6998 7290 -183 5 645 827 275 172 34 chr12 7911712 7912119 -113345411 + Lx8 LINE L1 6982 7444 -29 5 645 1001 89 0 0 chr12 7912145 7912302 -113345228 - L1_Mus4 LINE L1 0 6636 6480 5 645 23 0 0 0 chr12 7913962 7913985 -113343545 + AT_rich Low_complexity Low_complexity 1 23 0 5 645 207 0 0 0 chr12 7914629 7914652 -113342878 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 5 645 528 16 0 0 chr12 7914674 7914735 -113342795 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 645 256 324 28 0 chr12 7914741 7914812 -113342718 - ID4 SINE ID -9 74 2 5 645 545 274 70 33 chr12 7914966 7915208 -113342322 + L1MA4 LINE L1 5709 5959 -341 5 645 1639 149 132 31 chr12 7915336 7915662 -113341868 + ORR1B2 LTR MaLR 1 359 -8 6 645 273 327 85 12 chr12 7916051 7916215 -113341315 + L1ME1 LINE L1 5950 6125 -54 6 645 272 295 71 71 chr12 7916421 7916488 -113341042 - B3A SINE B2 0 198 2 6 645 497 248 23 39 chr12 7916488 7916618 -113340912 - RSINE1 SINE B4 -35 130 3 6 645 1147 199 56 52 chr12 7918038 7918308 -113339222 - B4 SINE B4 -20 272 2 6 645 406 306 119 23 chr12 7918358 7918535 -113338995 - MER20 DNA MER1_type -14 205 12 6 645 22 56 0 0 chr12 7918695 7918731 -113338799 + AT_rich Low_complexity Low_complexity 1 36 0 6 645 6524 182 50 10 chr12 7918752 7920008 -113337522 - Lx5 LINE L1 -7 7043 5737 6 645 6329 147 27 10 chr12 7920008 7921163 -113336367 + Lx5 LINE L1 4553 5726 -151 6 645 942 284 76 38 chr12 7921573 7922125 -113335405 + L1MB7 LINE L1 5588 6160 -24 6 645 4157 128 50 50 chr12 7922135 7923198 -113334332 + RLTR13D1 LTR ERVK 1 1023 0 6 645 420 335 109 69 chr12 7923310 7923331 -113334199 - B4A SINE B4 -4 288 268 6 645 429 70 0 0 chr12 7923331 7923388 -113334142 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 645 420 335 109 69 chr12 7923388 7923450 -113334080 - B4A SINE B4 -25 267 211 6 645 4452 70 22 8 chr12 7923450 7924053 -113333477 + L1_Mus3 LINE L1 6028 6638 0 6 645 420 335 109 69 chr12 7924053 7924071 -113333459 - B4A SINE B4 -82 210 199 6 645 198 0 0 0 chr12 7924071 7924093 -113333437 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 645 420 335 109 69 chr12 7924093 7924265 -113333265 - B4A SINE B4 -94 198 4 6 645 232 271 43 86 chr12 7924948 7924965 -113332565 + MT2B LTR ERVL 152 164 -437 6 645 383 291 87 10 chr12 7924965 7925069 -113332461 + B1_Mur1 SINE Alu 2 113 -36 6 645 207 279 0 60 chr12 7925771 7925855 -113331675 - L3 LINE CR1 -3019 1470 1392 6 645 185 288 58 43 chr12 7926970 7927039 -113330491 - MIR SINE MIR -109 99 30 6 645 636 282 35 0 chr12 7927168 7927342 -113330188 - Lx5 LINE L1 -416 6634 6455 6 645 24 53 0 0 chr12 7927506 7927544 -113329986 + AT_rich Low_complexity Low_complexity 1 38 0 6 645 465 133 0 0 chr12 7928405 7928480 -113329050 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 6 645 234 234 82 47 chr12 7928660 7928745 -113328785 - MTE2a LTR MaLR -14 365 278 6 645 713 223 0 28 chr12 7929939 7930082 -113327448 + B1_Mur1 SINE Alu 5 143 -6 6 645 366 335 41 30 chr12 7930840 7931037 -113326493 + L1MB3 LINE L1 5494 5692 -488 6 645 1058 218 106 44 chr12 7931145 7931611 -113325919 + RMER15 LTR ERVL 29 574 -1 6 645 240 299 0 13 chr12 7931611 7931689 -113325841 + L1MB3 LINE L1 5687 5763 -420 6 645 330 26 0 0 chr12 7931695 7931734 -113325796 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 645 558 43 0 0 chr12 7931734 7931802 -113325728 + (GA)n Simple_repeat Simple_repeat 1 69 0 6 645 1455 179 158 3 chr12 7931802 7932105 -113325425 - ORR1B2 LTR MaLR -15 352 3 6 645 546 16 0 0 chr12 7932106 7932169 -113325361 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 645 435 19 0 0 chr12 7932169 7932220 -113325310 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 645 499 228 122 49 chr12 7932233 7932561 -113324969 + L1MB3 LINE L1 5814 6175 -8 6 645 448 220 42 21 chr12 7932815 7932959 -113324571 - L1MA4 LINE L1 -433 5867 5721 6 645 647 100 9 0 chr12 7932975 7933085 -113324445 + (CCCTAA)n Simple_repeat Simple_repeat 4 114 0 6 645 233 265 0 0 chr12 7933623 7933672 -113323858 + B3A SINE B2 71 119 -79 6 645 540 45 0 0 chr12 7933710 7933777 -113323753 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 645 184 257 0 0 chr12 7934093 7934128 -113323402 + L2a LINE L2 3376 3410 -16 6 645 525 295 85 59 chr12 7934135 7934478 -113323052 - MLT1B LTR MaLR -19 371 3 6 645 265 238 91 6 chr12 7935657 7935822 -113321708 + L1M4 LINE L1 4268 4446 -1700 6 645 457 247 129 31 chr12 7935941 7936267 -113321263 + L1M4 LINE L1 4639 4996 -1150 6 645 422 339 50 16 chr12 7936418 7936676 -113320854 + L1MCb LINE L1 178 444 -5601 6 645 1443 248 14 33 chr12 7936857 7937195 -113320335 - MTD LTR MaLR -13 406 73 6 645 441 95 0 0 chr12 7937195 7937258 -113320272 + (CTTA)n Simple_repeat Simple_repeat 1 63 0 6 645 1443 248 14 33 chr12 7937258 7937286 -113320244 - MTD LTR MaLR -347 72 47 6 645 3869 167 23 31 chr12 7937291 7938034 -113319496 - Lx5 LINE L1 -65 6985 6249 6 645 467 165 0 0 chr12 7938035 7938138 -113319392 + L1_Mur2 LINE L1 5219 5321 -556 6 645 244 306 35 43 chr12 7938138 7938254 -113319276 - MTC LTR MaLR -287 134 20 6 645 352 237 82 22 chr12 7938268 7938402 -113319128 - MTC-int LTR MaLR 0 1258 1117 6 645 26 0 0 0 chr12 7938402 7938428 -113319102 + AT_rich Low_complexity Low_complexity 1 26 0 6 645 248 150 0 16 chr12 7938457 7938518 -113319012 - Lx2B LINE L1 0 7000 6941 6 645 1407 275 88 39 chr12 7938518 7938601 -113318929 - MTD-int LTR MaLR -132 1126 1068 6 645 1110 240 0 0 chr12 7938601 7938809 -113318721 + B3 SINE B2 2 209 -7 6 645 1407 272 71 32 chr12 7938809 7939211 -113318319 - MTD-int LTR MaLR -180 1400 682 6 645 584 267 40 75 chr12 7939207 7939265 -113318265 - MTD-int LTR MaLR -935 323 308 6 645 2207 163 32 77 chr12 7939265 7939770 -113317760 + RLTR45 LTR ERVK 1 482 0 6 645 584 263 35 161 chr12 7939770 7940001 -113317529 - MTD-int LTR MaLR -951 307 102 6 645 1583 144 7 98 chr12 7940011 7940318 -113317212 + ORR1B1 LTR MaLR 41 319 -75 6 645 3111 126 13 38 chr12 7940318 7940852 -113316678 - RLTR11A LTR ERVK 0 528 8 6 645 976 105 146 0 chr12 7940962 7941133 -113316397 - RLTR11A LTR ERVK 0 528 333 6 645 399 76 99 70 chr12 7941135 7941206 -113316324 + ORR1B1 LTR MaLR 314 386 -8 6 645 243 216 90 11 chr12 7941216 7941305 -113316225 - MTD-int LTR MaLR -1162 96 1 6 645 1343 251 86 11 chr12 7941305 7941679 -113315851 - MTD LTR MaLR 0 419 18 6 645 509 314 87 0 chr12 7941884 7942183 -113315347 + L1MC3 LINE L1 4623 4947 -1199 6 645 963 123 14 0 chr12 7942329 7942467 -113315063 + B1_Mur4 SINE Alu 5 144 -6 6 645 194 0 39 0 chr12 7942470 7942496 -113315034 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 645 451 313 109 20 chr12 7942590 7943095 -113314435 + L1MC3 LINE L1 5269 5818 -2224 6 645 624 254 67 15 chr12 7943152 7943371 -113314159 + Lx6 LINE L1 7165 7366 -94 6 645 325 303 128 32 chr12 7943423 7943672 -113313858 + L1MC3 LINE L1 5908 6180 -1605 6 645 1046 260 76 91 chr12 7943689 7944239 -113313291 + L1MC3 LINE L1 6267 6808 -977 6 645 988 268 43 105 chr12 7944352 7944744 -113312786 - MTE2a LTR MaLR -3 376 9 6 645 5025 181 34 113 chr12 7944748 7945410 -113312120 + L1Md_F2 LINE L1 1 606 -6118 6 645 8906 18 0 0 chr12 7945410 7946406 -113311124 + L1Md_A LINE L1 5587 6582 0 6 645 33228 83 9 17 chr12 7946406 7951428 -113306102 + L1Md_F2 LINE L1 607 5585 -298 6 645 7404 86 2 12 chr12 7951429 7952424 -113305106 + L1Md_F2 LINE L1 5587 6571 -11 6 645 399 41 0 0 chr12 7952427 7952476 -113305054 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 645 595 269 30 26 chr12 7953149 7953382 -113304148 + L1MC3 LINE L1 7018 7251 -534 6 645 366 266 30 23 chr12 7953773 7953904 -113303626 + L1M4 LINE L1 5089 5220 -926 6 645 758 203 0 40 chr12 7953963 7954112 -113303418 + B1_Mus1 SINE Alu 5 147 -1 6 645 267 268 117 32 chr12 7954155 7954309 -113303221 + L1M4 LINE L1 5388 5554 -624 6 645 2146 81 0 0 chr12 7954813 7955086 -113302444 - L1_Mus1 LINE L1 0 6567 6295 6 645 5774 57 4 0 chr12 7955087 7955845 -113301685 + L1_Mus1 LINE L1 5524 6284 -283 6 645 23 0 0 0 chr12 7957635 7957658 -113299872 + AT_rich Low_complexity Low_complexity 1 23 0 6 645 2004 279 32 37 chr12 7958683 7959604 -113297926 + L1M2 LINE L1 4498 5422 -875 6 645 268 308 57 16 chr12 7959669 7959791 -113297739 + Lx8 LINE L1 5780 5906 -1567 6 645 6686 81 2 3 chr12 7960079 7960947 -113296583 - L1_Mus1 LINE L1 -3 6564 5698 6 645 480 48 0 0 chr12 7961887 7961950 -113295580 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 645 333 0 0 0 chr12 7963223 7963260 -113294270 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 645 330 26 0 0 chr12 7963260 7963299 -113294231 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 645 1890 85 70 14 chr12 7963381 7963666 -113293864 - L1Md_F2 LINE L1 0 6582 6282 6 645 5741 56 0 0 chr12 7963666 7964360 -113293170 + L1_Mm LINE L1 5123 5816 -67 6 645 565 99 9 9 chr12 7964371 7964483 -113293047 + L1Md_F2 LINE L1 6471 6582 0 6 645 22 0 0 0 chr12 7965067 7965089 -113292441 + AT_rich Low_complexity Low_complexity 1 22 0 6 645 827 292 102 23 chr12 7965534 7965875 -113291655 - L1MB1 LINE L1 -21 6150 5763 6 645 501 17 0 0 chr12 7965875 7965933 -113291597 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 645 827 270 78 26 chr12 7965933 7966075 -113291455 - L1MB1 LINE L1 -406 5762 5618 6 645 634 251 12 29 chr12 7967447 7967619 -113289911 - L1M2 LINE L1 -701 5599 5431 6 645 362 314 123 75 chr12 7967702 7967970 -113289560 - B4A SINE B4 -4 288 8 6 645 236 306 54 76 chr12 7968390 7968613 -113288917 - MIR SINE MIR -1 261 44 6 645 510 70 0 0 chr12 7969054 7969125 -113288405 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 645 3065 117 17 0 chr12 7969900 7970362 -113287168 + Lx3B LINE L1 6502 6971 -2 6 645 180 0 0 0 chr12 7970376 7970396 -113287134 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 645 306 0 0 0 chr12 7970480 7970514 -113287016 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 645 294 333 128 6 chr12 7971189 7971361 -113286169 - MIR SINE MIR -59 203 11 6 645 1180 48 7 0 chr12 7971455 7971600 -113285930 - B1_Mus2 SINE Alu 0 147 2 6 645 299 25 0 24 chr12 7972444 7972485 -113285045 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 645 852 226 81 29 chr12 7972499 7972772 -113284758 + L1MD LINE L1 2528 2814 -3332 6 645 279 348 99 56 chr12 7973672 7973885 -113283645 + MLT1A0 LTR MaLR 1 222 -143 6 645 736 244 53 60 chr12 7973990 7974274 -113283256 + MLT1B LTR MaLR 108 389 -1 6 645 460 252 6 111 chr12 7976036 7976243 -113281287 + L1MA4 LINE L1 5746 5934 -363 6 645 744 272 83 12 chr12 7977263 7977590 -113279940 + L1M4 LINE L1 4975 5324 -822 6 645 638 241 21 0 chr12 7977745 7977890 -113279640 + B3A SINE B2 1 148 -50 6 645 342 0 0 0 chr12 7977890 7977928 -113279602 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 645 307 352 45 99 chr12 7979237 7979480 -113278050 + B4 SINE B4 63 292 0 6 645 348 83 0 0 chr12 7979482 7979530 -113278000 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 645 369 0 0 0 chr12 7980804 7980845 -113276685 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 645 425 339 70 58 chr12 7983136 7983342 -113274188 + B4A SINE B4 27 238 -54 6 645 1489 64 37 0 chr12 7983342 7983529 -113274001 + B2_Mm2 SINE B2 2 195 0 6 645 425 339 70 58 chr12 7983529 7983579 -113273951 + B4A SINE B4 239 286 -6 6 645 321 26 0 0 chr12 7983622 7983660 -113273870 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 645 246 297 105 35 chr12 7988556 7988727 -113268803 + L1M5 LINE L1 5366 5548 -646 6 645 2760 45 0 0 chr12 7988963 7989295 -113268235 - L1Md_F2 LINE L1 0 6582 6251 7 645 261 0 0 0 chr12 7991670 7991699 -113265831 + (A)n Simple_repeat Simple_repeat 1 29 0 7 645 1220 183 23 0 chr12 7993531 7993750 -113263780 + URR1B DNA MER1_type 2 225 0 7 645 699 276 42 26 chr12 7994082 7994272 -113263258 + B3A SINE B2 2 194 -4 7 646 331 267 38 0 chr12 7998982 7999087 -113258443 + MER5A1 DNA MER1_type 55 163 -3 7 646 649 318 8 25 chr12 8000052 8000297 -113257233 + B4 SINE B4 52 292 0 1 646 723 300 101 15 chr12 8000380 8000647 -113256883 + B4A SINE B4 3 292 0 2 646 489 34 0 0 chr12 8000659 8000718 -113256812 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 646 260 232 43 14 chr12 8001078 8001148 -113256382 + ID4 SINE ID 2 73 -10 4 646 419 186 10 0 chr12 8003472 8003569 -113253961 + GA-rich Low_complexity Low_complexity 2 99 0 5 646 996 150 186 5 chr12 8005764 8005952 -113251578 - URR1A DNA MER1_type 0 226 5 6 646 244 48 23 23 chr12 8006045 8006088 -113251442 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 646 953 132 0 7 chr12 8006090 8006227 -113251303 - B1_Mus1 SINE Alu -8 140 5 8 646 3461 20 5 0 chr12 8006251 8006649 -113250881 + L1Md_F2 LINE L1 6183 6582 0 9 646 448 90 0 0 chr12 8006880 8006947 -113250583 - B1_Mus2 SINE Alu -7 140 74 1 646 231 325 160 86 chr12 8007132 8007526 -113250004 + L2a LINE L2 3004 3426 0 1 646 1088 72 14 0 chr12 8008110 8008249 -113249281 + B1_Mus2 SINE Alu 2 142 -5 1 646 723 312 42 56 chr12 8009331 8009619 -113247911 + B4 SINE B4 9 292 0 1 646 429 231 63 16 chr12 8009662 8009851 -113247679 + RMER17C LTR ERVK 70 267 -143 1 646 279 0 0 0 chr12 8009851 8009882 -113247648 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1 646 270 0 0 0 chr12 8020353 8020383 -113237147 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1 646 1256 209 4 4 chr12 8024648 8024874 -113232656 - MTC LTR MaLR 0 421 196 1 646 4889 182 30 1 chr12 8024883 8025763 -113231767 - Lx5 LINE L1 -2 7048 6144 1 646 5897 123 84 5 chr12 8025770 8026715 -113230815 - Lx4B LINE L1 -111 6947 5929 1 646 1047 185 139 5 chr12 8026715 8026938 -113230592 - L1_Mur2 LINE L1 -613 5264 5012 2 646 1006 168 5 5 chr12 8026940 8027131 -113230399 - MTC LTR MaLR -230 191 1 1 646 714 147 0 0 chr12 8027186 8027329 -113230201 + (GGAA)n Simple_repeat Simple_repeat 2 144 0 2 646 190 310 108 20 chr12 8030037 8030139 -113227391 + MIR SINE MIR 33 143 -65 2 646 626 198 115 6 chr12 8030567 8030728 -113226802 + Lx4B LINE L1 6871 7050 -8 2 646 1155 158 77 0 chr12 8031241 8031450 -113226080 - URR1A DNA MER1_type 0 226 2 2 646 3133 126 9 3 chr12 8031830 8032293 -113225237 - Lx4A LINE L1 -108 6950 6487 2 646 10725 99 32 7 chr12 8032298 8033891 -113223639 + L1_Mur2 LINE L1 4236 5868 -9 2 646 385 258 58 36 chr12 8034899 8035036 -113222494 - RMER30 DNA MER1_type -29 173 34 2 646 2801 61 50 11 chr12 8035235 8035616 -113221914 - MTA_Mm LTR MaLR 0 396 1 2 646 472 130 22 0 chr12 8035920 8036012 -113221518 + CT-rich Low_complexity Low_complexity 4 97 0 2 646 199 271 34 0 chr12 8036143 8036202 -113221328 + L2b LINE L2 3107 3167 -208 3 646 4495 99 38 18 chr12 8037615 8038280 -113219250 + Lx LINE L1 5970 6647 -7 3 646 1727 60 0 9 chr12 8039517 8039736 -113217794 - L1_Mus3 LINE L1 -366 5517 5301 3 646 8268 66 10 0 chr12 8039753 8040794 -113216736 + L1_Mus3 LINE L1 5588 6638 0 3 646 1118 96 0 0 chr12 8040796 8040942 -113216588 + B1_Mus1 SINE Alu 1 146 -2 3 646 714 96 0 0 chr12 8040986 8041090 -113216440 + (GGGAA)n Simple_repeat Simple_repeat 4 107 0 3 646 196 353 49 28 chr12 8042577 8042720 -113214810 + MIR SINE MIR 116 261 -1 3 646 184 346 26 0 chr12 8043471 8043549 -113213981 - MIRb SINE MIR -85 183 104 3 646 234 342 53 0 chr12 8043955 8044031 -113213499 - MamRep1894 DNA hAT -42 81 2 3 646 273 29 0 0 chr12 8044147 8044181 -113213349 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 646 849 290 95 36 chr12 8044255 8044559 -113212971 - MTEa LTR MaLR -2 377 56 3 646 2900 44 12 0 chr12 8044561 8044903 -113212627 + ORR1A1 LTR MaLR 1 346 0 4 646 507 259 59 0 chr12 8044962 8045097 -113212433 - B1F2 SINE Alu -6 143 1 4 646 650 269 68 42 chr12 8047036 8047226 -113210304 + B3A SINE B2 1 195 -3 4 646 1546 43 11 0 chr12 8047918 8048106 -113209424 + B2_Mm1a SINE B2 2 191 -2 4 646 495 170 64 0 chr12 8048427 8048521 -113209009 + B1_Mur1 SINE Alu 44 143 -6 4 646 267 54 0 0 chr12 8048521 8048558 -113208972 + (CAA)n Simple_repeat Simple_repeat 2 38 0 4 646 454 306 89 75 chr12 8048845 8049127 -113208403 + B4A SINE B4 1 286 -6 4 646 366 140 32 21 chr12 8049147 8049242 -113208288 + (CAGA)n Simple_repeat Simple_repeat 1 96 0 4 646 25 0 0 0 chr12 8049908 8049933 -113207597 + AT_rich Low_complexity Low_complexity 1 25 0 4 646 411 284 56 15 chr12 8050193 8050371 -113207159 - MIR SINE MIR -75 201 18 4 646 535 145 40 11 chr12 8051449 8051623 -113205907 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 5 646 207 0 0 0 chr12 8051631 8051654 -113205876 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 646 1137 111 0 86 chr12 8051725 8051923 -113205607 - B2_Mm2 SINE B2 -14 181 1 5 646 323 297 108 7 chr12 8052287 8052426 -113205104 - MER20 DNA MER1_type -2 217 65 5 646 567 283 51 105 chr12 8052527 8052859 -113204671 - MLT1A0 LTR MaLR -40 325 12 5 646 271 340 53 74 chr12 8054388 8054671 -113202859 + Charlie23a DNA MER1_type 40 316 -23 5 646 739 310 121 45 chr12 8054809 8055205 -113202325 + MLT1H LTR MaLR 72 497 -52 5 646 1100 34 101 0 chr12 8057563 8057712 -113199818 + B2_Mm2 SINE B2 1 164 -31 5 646 231 61 0 0 chr12 8058914 8058947 -113198583 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 646 24 32 0 0 chr12 8059319 8059350 -113198180 + AT_rich Low_complexity Low_complexity 1 31 0 5 646 221 119 24 0 chr12 8059354 8059396 -113198134 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 646 281 298 175 12 chr12 8059459 8059619 -113197911 + LTR81A LTR ERV1? 112 297 -1053 6 646 413 350 28 51 chr12 8060158 8060375 -113197155 - MER20 DNA MER1_type -1 218 7 6 646 480 354 60 5 chr12 8060388 8060604 -113196926 - L2 LINE L2 -655 2764 2537 6 646 835 293 47 70 chr12 8061226 8061536 -113195994 + ORR1E LTR MaLR 7 314 -45 6 646 450 0 0 0 chr12 8061536 8061586 -113195944 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 646 835 293 47 70 chr12 8061586 8061634 -113195896 + ORR1E LTR MaLR 315 357 -2 6 646 520 231 8 55 chr12 8061884 8062012 -113195518 - ORR1E LTR MaLR -231 128 7 6 646 1099 272 65 18 chr12 8062175 8062512 -113195018 + MTEb LTR MaLR 3 355 -24 6 646 423 0 0 0 chr12 8066064 8066111 -113191419 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 646 219 329 0 56 chr12 8066293 8066383 -113191147 - B4A SINE B4 -207 85 1 6 646 5266 84 98 18 chr12 8066663 8067435 -113190095 + L1_Mus3 LINE L1 5804 6637 -1 7 646 410 287 206 45 chr12 8071610 8071920 -113185610 - MLT1B LTR MaLR -16 374 15 7 646 460 207 0 0 chr12 8071908 8071995 -113185535 + ORR1D2 LTR MaLR 282 368 -2 7 646 5095 98 19 15 chr12 8072031 8072821 -113184709 - RLTR13C2 LTR ERVK -15 793 1 7 646 1878 76 276 5 chr12 8073495 8073898 -113183632 - RLTR1B LTR ERV1 0 512 1 7 646 1224 48 0 0 chr12 8075466 8075611 -113181919 - B1_Mus2 SINE Alu -2 145 1 7 646 605 261 99 77 chr12 8077102 8077357 -113180173 + MTEa LTR MaLR 1 270 -109 7 646 248 211 0 71 chr12 8077434 8077490 -113180040 + MTEa LTR MaLR 291 342 -37 7 646 272 303 0 83 chr12 8077810 8077918 -113179612 + MER63A DNA AcHobo 86 184 -26 7 646 236 343 7 62 chr12 8077969 8078115 -113179415 - MLT1N2 LTR MaLR -8 554 417 7 646 660 171 0 0 chr12 8078612 8078622 -113178908 + (CA)n Simple_repeat Simple_repeat 2 11 0 7 646 225 0 0 0 chr12 8078622 8078647 -113178883 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 8 646 660 171 0 0 chr12 8078647 8078812 -113178718 + (CA)n Simple_repeat Simple_repeat 2 166 0 8 646 360 148 0 0 chr12 8080318 8080379 -113177151 + (GGGGA)n Simple_repeat Simple_repeat 5 65 0 8 646 453 341 119 51 chr12 8080411 8080865 -113176665 - LTR79 LTR ERVL -2 525 41 8 646 368 325 60 39 chr12 8080892 8081267 -113176263 + L1M5 LINE L1 5267 5650 -2232 8 646 720 71 0 0 chr12 8081414 8081513 -113176017 + (GA)n Simple_repeat Simple_repeat 2 100 0 8 646 2405 197 91 22 chr12 8081548 8082097 -113175433 + Lx6 LINE L1 6856 7442 -18 8 646 234 0 0 0 chr12 8082097 8082123 -113175407 + (ATG)n Simple_repeat Simple_repeat 3 28 0 8 646 1980 142 29 9 chr12 8082373 8082720 -113174810 + ORR1B1 LTR MaLR 41 394 0 8 646 207 0 0 0 chr12 8083134 8083157 -113174373 + (A)n Simple_repeat Simple_repeat 1 23 0 8 646 266 186 38 114 chr12 8083178 8083202 -113174328 - MLT2B1 LTR ERVL 0 567 552 9 646 1153 139 80 19 chr12 8083202 8083415 -113174115 + URR1A DNA MER1_type 1 226 0 9 646 266 194 44 109 chr12 8083415 8083485 -113174045 - MLT2B1 LTR ERVL -16 551 471 9 646 394 276 6 84 chr12 8083525 8083691 -113173839 - MT2A LTR ERVL -295 238 86 9 646 236 341 137 16 chr12 8083589 8083771 -113173759 - MTC LTR MaLR -212 209 6 9 646 677 242 228 46 chr12 8085801 8086108 -113171422 - MLT1A LTR MaLR -11 363 1 9 646 557 263 42 31 chr12 8087843 8088035 -113169495 - RLTR23 LTR ERV1 0 430 237 9 646 489 183 0 11 chr12 8088205 8088299 -113169231 - RLTR23 LTR ERV1 -330 100 8 9 646 214 356 93 0 chr12 8088384 8088502 -113169028 - MIRb SINE MIR -23 245 117 9 646 1291 231 94 33 chr12 8088620 8088699 -113168831 + MT2A LTR ERVL 7 83 -450 9 646 576 0 0 0 chr12 8088699 8088763 -113168767 + (TTC)n Simple_repeat Simple_repeat 2 65 0 9 646 1291 231 94 33 chr12 8088763 8088780 -113168750 + MT2A LTR ERVL 84 100 -433 9 646 1248 41 0 0 chr12 8088780 8088926 -113168604 - B1_Mus1 SINE Alu 0 148 3 9 646 1291 215 61 51 chr12 8088926 8089288 -113168242 + MT2A LTR ERVL 101 533 0 9 646 387 0 0 0 chr12 8090769 8090812 -113166718 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 646 432 0 0 0 chr12 8090812 8090859 -113166671 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 646 4363 162 71 38 chr12 8090878 8091751 -113165779 - Lx5 LINE L1 -3 7047 6146 1 646 675 269 122 108 chr12 8092057 8092345 -113165185 + B4A SINE B4 1 292 0 1 646 183 283 0 0 chr12 8092346 8092406 -113165124 + (CATA)n Simple_repeat Simple_repeat 4 63 0 1 646 1122 44 7 0 chr12 8092454 8092591 -113164939 - B1_Mm SINE Alu -9 138 1 1 646 1738 142 28 9 chr12 8092924 8093243 -113164287 - ORR1B1 LTR MaLR 0 394 70 1 646 213 39 0 0 chr12 8093243 8093269 -113164261 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 646 394 258 34 0 chr12 8093651 8093740 -113163790 + PB1D9 SINE Alu 9 100 -20 1 646 369 0 0 0 chr12 8093740 8093781 -113163749 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 646 384 82 0 0 chr12 8093783 8093844 -113163686 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 646 1566 179 115 3 chr12 8094326 8094673 -113162857 + ORR1B1 LTR MaLR 1 386 -8 1 646 392 275 105 42 chr12 8094843 8095033 -113162497 + MTEa LTR MaLR 8 209 -170 1 646 448 200 9 9 chr12 8095037 8095153 -113162377 + C-rich Low_complexity Low_complexity 1 116 0 1 646 305 242 123 19 chr12 8095153 8095281 -113162249 + MTEa LTR MaLR 244 379 0 1 646 504 93 0 0 chr12 8095453 8095528 -113162002 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 646 266 304 130 39 chr12 8097348 8097502 -113160028 - MER58A DNA MER1_type -10 214 47 1 646 243 314 87 10 chr12 8097690 8097793 -113159737 - MER58A DNA MER1_type -113 111 1 1 646 624 164 84 36 chr12 8099457 8099616 -113157914 + ORR1D1 LTR MaLR 164 374 0 1 646 1434 245 43 3 chr12 8099616 8099985 -113157545 + ORR1D1-int LTR MaLR 1 384 -986 1 646 830 126 130 11 chr12 8099985 8100169 -113157361 + ORR1D1 LTR MaLR 169 374 0 1 646 349 363 42 42 chr12 8100924 8101114 -113156416 + MamRep38 DNA hAT 5 194 -101 1 646 226 280 0 0 chr12 8101206 8101256 -113156274 + (CACG)n Simple_repeat Simple_repeat 2 51 0 1 646 297 0 0 0 chr12 8101256 8101289 -113156241 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 646 227 293 47 35 chr12 8101433 8101518 -113156012 - MIRb SINE MIR -66 202 117 1 646 1210 259 49 69 chr12 8101537 8102054 -113155476 + RMER1A Other Other 1 442 -588 1 646 1527 239 53 11 chr12 8102055 8102411 -113155119 - MTD LTR MaLR -48 371 1 1 646 370 304 22 0 chr12 8102411 8102503 -113155027 + ORR1D1 LTR MaLR 24 117 -242 1 646 556 313 55 15 chr12 8103597 8103798 -113153732 + MLT2D LTR ERVL 150 358 -56 1 646 188 277 21 0 chr12 8104036 8104083 -113153447 - L3 LINE CR1 -136 4353 4306 1 646 188 237 0 0 chr12 8104624 8104662 -113152868 + L2b LINE L2 3329 3366 -9 1 646 4959 85 8 0 chr12 8104932 8105590 -113151940 - L1_Mus3 LINE L1 -6 6632 5970 1 646 203 347 114 11 chr12 8105590 8105765 -113151765 - L2b LINE L2 -221 3154 2962 1 646 530 264 49 167 chr12 8105815 8106102 -113151428 + MTE2a LTR MaLR 3 255 -124 1 646 447 199 66 44 chr12 8106163 8106300 -113151230 + MTE2a LTR MaLR 206 345 -34 1 646 248 312 136 61 chr12 8106292 8106439 -113151091 + B4A SINE B4 18 175 -117 1 646 210 37 0 0 chr12 8106493 8106520 -113151010 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 646 1152 254 42 32 chr12 8107762 8108047 -113149483 + B4 SINE B4 5 292 0 1 646 366 23 0 0 chr12 8108080 8108123 -113149407 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 646 602 280 12 31 chr12 8108250 8108412 -113149118 + RSINE1 SINE B4 3 161 -4 1 646 1141 106 0 11 chr12 8110593 8110775 -113146755 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 646 225 94 0 0 chr12 8110775 8110807 -113146723 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 646 458 236 106 0 chr12 8111178 8111301 -113146229 - MTE2b LTR MaLR -13 366 231 1 646 21 71 0 0 chr12 8111470 8111512 -113146018 + AT_rich Low_complexity Low_complexity 1 42 0 1 646 1223 54 0 0 chr12 8112659 8112807 -113144723 + B1_Mus1 SINE Alu 1 148 0 1 646 231 88 0 0 chr12 8114689 8114723 -113142807 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 646 606 272 9 59 chr12 8119073 8119292 -113138238 + Charlie1a DNA MER1_type 751 958 -497 1 646 285 281 344 20 chr12 8120037 8120255 -113137275 + L1MB4 LINE L1 5659 5950 -221 1 646 505 321 129 9 chr12 8120321 8120538 -113136992 + B4A SINE B4 5 247 -45 1 646 302 45 23 0 chr12 8120574 8120618 -113136912 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 646 372 245 40 10 chr12 8120675 8120774 -113136756 - BC1_Mm scRNA scRNA -45 107 6 1 646 286 139 0 0 chr12 8120912 8120955 -113136575 - tRNA-Met_ tRNA tRNA -33 43 1 1 646 5250 41 8 0 chr12 8120962 8121592 -113135938 + L1Md_F2 LINE L1 5948 6582 0 1 646 610 227 99 7 chr12 8121592 8121743 -113135787 + L1MB4 LINE L1 5964 6128 -52 1 646 4593 162 90 12 chr12 8122503 8123344 -113134186 - RMER13B LTR ERVK -1 907 1 1 646 528 59 0 0 chr12 8123406 8123474 -113134056 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1 646 444 77 0 0 chr12 8123745 8123810 -113133720 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 646 1107 0 0 0 chr12 8123814 8123937 -113133593 + (GGGAGA)n Simple_repeat Simple_repeat 6 128 0 1 646 270 0 0 0 chr12 8124956 8124986 -113132544 + (TGG)n Simple_repeat Simple_repeat 2 31 0 1 646 195 69 0 0 chr12 8124988 8125017 -113132513 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 646 1140 36 15 0 chr12 8125030 8125167 -113132363 - B1_Mm SINE Alu -6 141 3 1 646 318 285 49 35 chr12 8125577 8125719 -113131811 + L1MC4 LINE L1 7425 7568 -474 1 646 3921 113 13 11 chr12 8125723 8126331 -113131199 - L1_Mur1 LINE L1 -744 5142 4534 1 80 2815 112 49 5 chr12 8126333 8126765 -113130765 + Lx3C LINE L1 6524 6974 -2 1 647 299 25 0 24 chr12 8126999 8127040 -113130490 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 647 372 243 0 0 chr12 8127792 8127903 -113129627 + GA-rich Low_complexity Low_complexity 3 113 0 1 647 293 306 17 75 chr12 8128213 8128333 -113129197 + PB1 SINE Alu 13 125 -2 1 647 4037 130 36 6 chr12 8128720 8129361 -113128169 + Lx3A LINE L1 6316 6975 -6 1 647 189 0 0 0 chr12 8130208 8130229 -113127301 + (CACCC)n Simple_repeat Simple_repeat 5 25 0 1 647 36091 35 0 0 chr12 8130698 8136303 -113121227 + L1Md_T LINE L1 1 5589 -297 1 647 9163 6 0 0 chr12 8136303 8137326 -113120204 + L1Md_T LINE L1 5590 6585 0 1 647 553 292 122 9 chr12 8137700 8137921 -113119609 - B4A SINE B4 -35 257 12 1 647 1284 179 39 12 chr12 8138875 8139130 -113118400 + ORR1D1 LTR MaLR 1 262 -112 1 647 21 0 0 0 chr12 8140281 8140302 -113117228 + AT_rich Low_complexity Low_complexity 1 21 0 1 647 337 59 0 0 chr12 8140435 8140486 -113117044 + L1_Mus4 LINE L1 6580 6630 -6 1 647 386 258 72 0 chr12 8140703 8140800 -113116730 + B3A SINE B2 51 154 -44 1 647 510 103 0 0 chr12 8140800 8140878 -113116652 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 647 838 307 47 32 chr12 8140895 8141017 -113116513 - L1MB8 LINE L1 -89 6089 5957 1 647 6037 131 43 17 chr12 8141017 8142044 -113115486 + Lx4A LINE L1 6004 7057 -1 1 647 838 307 47 32 chr12 8142044 8142301 -113115229 - L1MB7 LINE L1 -222 5956 5704 1 647 327 256 129 14 chr12 8142292 8142431 -113115099 + L1MB7 LINE L1 6017 6171 -13 1 647 499 284 8 0 chr12 8143038 8143172 -113114358 - MER105 DNA DNA -2 202 68 1 647 732 33 0 0 chr12 8143846 8143937 -113113593 + (TC)n Simple_repeat Simple_repeat 1 91 0 1 647 444 19 0 0 chr12 8143937 8143989 -113113541 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 647 487 182 0 0 chr12 8144102 8144190 -113113340 + B3A SINE B2 3 90 -108 1 647 1055 139 98 0 chr12 8144189 8144383 -113113147 + URR1A DNA MER1_type 14 226 0 1 647 908 273 93 19 chr12 8144424 8144682 -113112848 + B4A SINE B4 2 278 -14 1 647 561 15 0 0 chr12 8144685 8144751 -113112779 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 647 408 56 0 0 chr12 8146284 8146338 -113111192 - ORR1A4 LTR MaLR -2 327 274 1 647 1258 62 0 0 chr12 8146370 8146530 -113111000 - L1_Mus1 LINE L1 -1 6566 6407 1 647 334 236 391 0 chr12 8146536 8146682 -113110848 - B4 SINE B4 -65 227 25 1 647 382 274 48 37 chr12 8146792 8147018 -113110512 - L1MA4 LINE L1 -128 6028 5810 1 647 4251 141 18 10 chr12 8149361 8150048 -113107482 + RLTR17 LTR ERVK 1 692 0 1 647 261 0 0 0 chr12 8150077 8150106 -113107424 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 647 7868 142 7 14 chr12 8150445 8150497 -113107033 - MusHAL1 LINE L1 -389 2323 2278 1 647 243 61 0 0 chr12 8150497 8150530 -113107000 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 647 1185 36 0 0 chr12 8150530 8150667 -113106863 - B1_Mus1 SINE Alu -9 139 3 1 647 7868 142 7 14 chr12 8150667 8151958 -113105572 - MusHAL1 LINE L1 -435 2277 989 1 647 2195 162 41 32 chr12 8151955 8152105 -113105425 + Lx2B LINE L1 5140 5278 -599 1 647 1034 108 6 6 chr12 8152105 8152273 -113105257 + Lx LINE L1 6486 6653 -1 1 647 2195 162 41 32 chr12 8152273 8152561 -113104969 + Lx2B LINE L1 5279 5582 -295 1 647 6202 173 67 15 chr12 8152563 8153792 -113103738 + Lx2B LINE L1 5698 6990 -10 1 647 421 244 31 8 chr12 8154019 8154147 -113103383 + MER5A1 DNA MER1_type 33 163 -3 1 647 3729 91 35 2 chr12 8154347 8154864 -113102666 - Lx2 LINE L1 0 6997 6464 1 647 888 89 171 0 chr12 8154864 8155010 -113102520 - Lx2 LINE L1 -721 6276 6106 1 647 366 205 0 0 chr12 8155314 8155392 -113102138 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 647 243 0 0 0 chr12 8155392 8155419 -113102111 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 647 1177 273 81 26 chr12 8155600 8156145 -113101385 + L1MB4 LINE L1 5477 6051 -129 1 647 37 62 0 0 chr12 8156363 8156428 -113101102 + AT_rich Low_complexity Low_complexity 1 65 0 1 647 230 159 27 68 chr12 8158103 8158177 -113099353 + A-rich Low_complexity Low_complexity 5 75 0 1 647 3369 151 4 0 chr12 8159217 8159740 -113097790 - Lx5 LINE L1 -47 5830 5306 1 647 6014 208 33 6 chr12 8159740 8160923 -113096607 + Lx5 LINE L1 5833 7047 -3 1 647 895 99 0 14 chr12 8162656 8162799 -113094731 + (GAA)n Simple_repeat Simple_repeat 1 141 0 1 647 1143 57 7 0 chr12 8163499 8163639 -113093891 - B1_Mus1 SINE Alu -7 141 1 1 647 564 236 0 26 chr12 8164266 8164379 -113093151 + PB1D7 SINE Alu 3 112 -8 2 647 274 282 14 0 chr12 8166024 8166095 -113091435 - B4 SINE B4 0 292 221 2 647 284 250 11 22 chr12 8166111 8166201 -113091329 + (TATG)n Simple_repeat Simple_repeat 4 92 0 2 647 757 330 24 24 chr12 8166212 8166504 -113091026 - B4A SINE B4 0 292 1 2 647 459 312 16 0 chr12 8166583 8166708 -113090822 - B4A SINE B4 -165 127 1 2 647 290 0 75 0 chr12 8166828 8166868 -113090662 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 2 647 620 246 58 0 chr12 8166869 8167007 -113090523 - B1_Mur2 SINE Alu -2 147 2 2 647 492 103 95 0 chr12 8167021 8167137 -113090393 - Lx9 LINE L1 0 7644 7518 2 647 260 72 0 45 chr12 8167137 8167181 -113090349 + (CATA)n Simple_repeat Simple_repeat 3 44 0 2 647 4622 192 52 5 chr12 8167185 8168144 -113089386 - Lx9 LINE L1 -179 7465 6462 2 647 7910 107 26 9 chr12 8168144 8169455 -113088075 - L1Md_F2 LINE L1 -12 6570 5252 2 647 396 0 0 0 chr12 8169455 8169499 -113088031 + (CTA)n Simple_repeat Simple_repeat 2 45 0 2 647 8946 147 49 10 chr12 8169499 8171772 -113085758 - L1Md_F2 LINE L1 -635 5251 2750 2 647 5086 75 0 1 chr12 8171786 8172490 -113085040 + L1Md_F2 LINE L1 4883 5585 -298 2 647 7317 81 7 6 chr12 8172491 8173472 -113084058 + L1Md_F2 LINE L1 5587 6568 -14 2 647 260 293 0 12 chr12 8173543 8173626 -113083904 + L1MC4 LINE L1 6658 6739 -1303 2 647 218 351 14 0 chr12 8173738 8173812 -113083718 + ID SINE ID 1 75 -149 2 647 1698 209 29 48 chr12 8174120 8174603 -113082927 + RMER3D-int LTR ERVK 2364 2837 -5 2 647 2150 161 93 68 chr12 8174608 8174703 -113082827 + RLTR31_Mm LTR ERVK 1 93 -468 2 647 531 0 0 0 chr12 8174703 8174762 -113082768 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 647 2150 161 93 68 chr12 8174762 8175213 -113082317 + RLTR31_Mm LTR ERVK 94 561 0 2 647 265 198 130 14 chr12 8175213 8175301 -113082229 + ORR1E LTR MaLR 269 365 -14 2 647 246 312 42 0 chr12 8175558 8175702 -113081828 + L1MC4 LINE L1 7338 7487 -395 2 647 349 329 71 48 chr12 8175757 8176009 -113081521 + L1MC4 LINE L1 7558 7815 -227 2 647 369 303 98 38 chr12 8176117 8176381 -113081149 + B4A SINE B4 5 284 -8 2 647 198 0 0 0 chr12 8176424 8176446 -113081084 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 647 1167 340 136 25 chr12 8176486 8177389 -113080141 + MLT1F-int LTR MaLR 336 1456 -33 2 647 396 320 82 63 chr12 8177733 8177940 -113079590 + MLT1F LTR MaLR 116 326 -222 2 647 405 294 64 103 chr12 8177936 8178295 -113079235 - ORR1D2 LTR MaLR -13 357 11 2 647 372 317 83 73 chr12 8178308 8178512 -113079018 + MLT1F LTR MaLR 374 579 0 2 647 202 154 26 0 chr12 8178574 8178613 -113078917 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 2 647 312 27 0 0 chr12 8178622 8178659 -113078871 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 647 5290 26 0 3 chr12 8179575 8180190 -113077340 + L1Md_F2 LINE L1 5957 6569 -13 2 647 318 262 65 8 chr12 8181193 8181316 -113076214 - L1MA4A LINE L1 -393 5910 5781 2 647 230 182 44 29 chr12 8181336 8181404 -113076126 - L1MA4A LINE L1 -503 5797 5729 2 647 306 0 0 0 chr12 8181465 8181499 -113076031 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 2 647 276 30 0 0 chr12 8181500 8181533 -113075997 + (TCCCC)n Simple_repeat Simple_repeat 2 34 0 2 647 29386 61 7 2 chr12 8181533 8185665 -113071865 + L1Md_F2 LINE L1 1792 5945 -637 2 647 247 0 0 0 chr12 8185662 8185690 -113071840 + L1_Mm LINE L1 5526 5553 -330 2 647 6870 91 22 9 chr12 8185696 8186661 -113070869 + L1Md_F2 LINE L1 5587 6563 -19 2 647 43 81 0 0 chr12 8186714 8186813 -113070717 + AT_rich Low_complexity Low_complexity 1 99 0 2 647 188 0 74 0 chr12 8186862 8186889 -113070641 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 647 1135 166 90 10 chr12 8186889 8187090 -113070440 + MTC LTR MaLR 197 413 -8 2 647 646 141 12 12 chr12 8187176 8187341 -113070189 + (CAGA)n Simple_repeat Simple_repeat 4 168 0 2 647 414 327 52 45 chr12 8188435 8188589 -113068941 + RSINE1 SINE B4 11 165 0 2 647 34 0 0 0 chr12 8188589 8188623 -113068907 + AT_rich Low_complexity Low_complexity 1 34 0 2 647 1294 170 9 5 chr12 8188685 8188909 -113068621 + URR1B DNA MER1_type 1 225 0 2 647 1427 46 20 10 chr12 8189164 8189360 -113068170 + L1Md_F2 LINE L1 6385 6582 0 2 647 1022 241 9 0 chr12 8189452 8189664 -113067866 + B3 SINE B2 3 216 0 2 647 1034 214 15 0 chr12 8189700 8189901 -113067629 + B3 SINE B2 1 204 -12 2 647 473 259 83 0 chr12 8190079 8190187 -113067343 + B1_Mur1 SINE Alu 12 128 -21 2 647 504 0 0 0 chr12 8190188 8190244 -113067286 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 647 669 158 0 0 chr12 8190276 8190415 -113067115 + GA-rich Low_complexity Low_complexity 2 140 0 2 647 870 138 232 0 chr12 8190807 8190988 -113066542 + URR1B DNA MER1_type 1 223 -2 2 647 395 322 45 11 chr12 8191117 8191296 -113066234 + L1MD LINE L1 3577 3761 -2385 2 647 358 391 63 44 chr12 8191589 8191795 -113065735 - LTR79 LTR ERVL -308 219 10 2 647 1032 99 41 6 chr12 8192865 8193037 -113064493 - L1_Mus3 LINE L1 -5 6633 6456 2 647 6334 73 14 11 chr12 8193037 8194099 -113063431 + L1_Mus3 LINE L1 5409 6474 -164 2 647 2969 200 5 15 chr12 8194108 8194706 -113062824 - RMER1B Other Other -6 1060 469 2 647 207 184 0 0 chr12 8194870 8194908 -113062622 + (CACCAT)n Simple_repeat Simple_repeat 4 41 0 2 647 180 0 0 0 chr12 8194924 8194944 -113062586 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 2 647 437 283 0 0 chr12 8194948 8195047 -113062483 - PB1D10 SINE Alu -17 100 2 2 647 6188 66 7 29 chr12 8195364 8196204 -113061326 + RLTR13B2 LTR ERVK 1 822 0 2 647 270 91 55 0 chr12 8196387 8196442 -113061088 + (GGAGA)n Simple_repeat Simple_repeat 4 61 0 2 647 775 299 101 84 chr12 8196847 8197332 -113060198 - MLT1D LTR MaLR -12 493 1 2 647 200 59 29 0 chr12 8197955 8197989 -113059541 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 647 1071 84 0 7 chr12 8198040 8198183 -113059347 - B1_Mm SINE Alu -1 146 5 2 647 797 276 34 35 chr12 8198259 8198584 -113058946 - Lx8 LINE L1 -985 6659 6257 2 647 246 32 0 0 chr12 8198584 8198615 -113058915 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 647 791 296 91 52 chr12 8198615 8198774 -113058756 - Lx8 LINE L1 -1304 6340 6157 2 647 589 85 0 0 chr12 8198833 8198915 -113058615 - ORR1B1 LTR MaLR 0 394 313 2 647 1853 133 102 78 chr12 8198915 8199297 -113058233 + ORR1B1 LTR MaLR 1 391 -3 2 647 4782 169 78 36 chr12 8199300 8200301 -113057229 + ORR1B1-int LTR MaLR 1 1043 -920 2 647 4067 189 74 19 chr12 8200301 8201296 -113056234 + L1_Mus1 LINE L1 184 1233 -5383 2 647 35161 23 1 0 chr12 8201265 8205643 -113051887 + L1Md_A LINE L1 1203 5585 -298 2 647 9048 3 0 0 chr12 8205644 8206640 -113050890 + L1Md_A LINE L1 5587 6582 0 2 647 20735 102 50 7 chr12 8206716 8211053 -113046477 + L1_Mus1 LINE L1 2031 6566 -1 2 647 5036 121 50 108 chr12 8211217 8211631 -113045899 + ORR1B1-int LTR MaLR 1029 1440 -523 2 647 4654 52 12 5 chr12 8211631 8212214 -113045316 + LTRIS_Mus LTR ERV1 1 587 0 2 647 5036 121 50 108 chr12 8212214 8212791 -113044739 + ORR1B1-int LTR MaLR 1441 1963 0 2 647 686 76 37 28 chr12 8212818 8212926 -113044604 + ORR1B1 LTR MaLR 286 394 0 2 647 1502 206 7 14 chr12 8212927 8213212 -113044318 - ORR1B2 LTR MaLR -79 288 6 2 647 324 265 0 0 chr12 8213228 8213364 -113044166 - ORR1B2-int LTR MaLR -688 821 686 2 647 478 217 0 0 chr12 8213277 8213369 -113044161 - B1_Mus2 SINE Alu -22 125 34 2 647 635 299 8 15 chr12 8214113 8214292 -113043238 + B3 SINE B2 4 181 -12 2 647 188 261 0 21 chr12 8214453 8214500 -113043030 - L2c LINE L2 -13 3374 3329 2 647 607 277 103 20 chr12 8215275 8215744 -113041786 - L1MDa LINE L1 -4796 1837 1322 2 647 500 362 124 58 chr12 8216047 8216443 -113041087 + MLT1G3 LTR MaLR 172 593 -2 2 647 1506 63 16 0 chr12 8216470 8216661 -113040869 - B2_Mm2 SINE B2 -1 194 1 2 647 249 57 0 0 chr12 8216835 8216870 -113040660 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 2 647 303 241 62 44 chr12 8216921 8217034 -113040496 - PB1D10 SINE Alu 0 117 3 2 647 297 0 0 0 chr12 8217050 8217083 -113040447 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 647 451 248 19 38 chr12 8217083 8217188 -113040342 - PB1D10 SINE Alu -12 105 3 2 647 290 222 89 57 chr12 8217233 8217357 -113040173 - L1M5 LINE L1 -790 5383 5256 2 647 375 291 0 0 chr12 8217410 8217489 -113040041 + ID4 SINE ID 2 80 -3 2 647 273 303 25 0 chr12 8217717 8217839 -113039691 - L1M5 LINE L1 -964 5182 5058 2 647 6425 137 29 119 chr12 8218007 8219569 -113037961 - L1_Mur3 LINE L1 -967 4913 3493 2 647 1537 63 0 0 chr12 8219583 8219772 -113037758 - B2_Mm1t SINE B2 -4 189 1 2 647 447 176 10 0 chr12 8219772 8219874 -113037656 - L1_Mur3 LINE L1 -2874 3006 2904 2 647 387 161 30 79 chr12 8219874 8219975 -113037555 - L1_Mur3 LINE L1 -3344 2536 2441 2 647 6568 48 6 1 chr12 8219975 8220829 -113036701 + L1_Mus1 LINE L1 5710 6567 0 2 647 1922 183 8 10 chr12 8220837 8221218 -113036312 - L1_Mur3 LINE L1 -3429 2451 2065 2 647 333 0 0 0 chr12 8221218 8221255 -113036275 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2 647 1922 189 133 14 chr12 8221255 8221573 -113035957 - L1_Mur3 LINE L1 -3806 2074 2011 2 647 372 254 14 69 chr12 8221599 8221815 -113035715 - L1_Mur3 LINE L1 -7441 287 84 2 647 211 0 0 81 chr12 8221951 8221988 -113035542 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 647 424 230 0 0 chr12 8222098 8222172 -113035358 + ID4 SINE ID 3 76 -7 2 647 25 0 0 0 chr12 8222980 8223005 -113034525 + AT_rich Low_complexity Low_complexity 1 25 0 2 647 718 338 17 57 chr12 8224732 8225030 -113032500 + B4A SINE B4 6 291 -1 2 647 725 276 91 36 chr12 8225177 8225537 -113031993 - LTR41B LTR ERVL 0 758 348 2 647 263 354 71 0 chr12 8225707 8225834 -113031696 - MER20 DNA MER1_type -80 139 4 2 647 739 78 132 0 chr12 8226219 8226348 -113031182 + URR1A DNA MER1_type 80 225 -1 2 647 796 127 126 6 chr12 8226426 8226593 -113030937 + Lx4A LINE L1 6870 7056 -2 2 647 437 195 155 26 chr12 8227238 8227354 -113030176 - ID_B1 SINE B4 -9 215 85 2 647 21 0 0 0 chr12 8227790 8227811 -113029719 + AT_rich Low_complexity Low_complexity 1 21 0 2 647 382 243 0 0 chr12 8228600 8228674 -113028856 - RSINE1 SINE B4 -37 128 55 2 647 259 330 35 18 chr12 8228691 8228805 -113028725 - RMER1C Other Other -1 1341 1226 2 647 1262 112 21 11 chr12 8229093 8229283 -113028247 - B2_Mm2 SINE B2 -2 193 2 2 647 28 29 0 0 chr12 8229649 8229684 -113027846 + AT_rich Low_complexity Low_complexity 1 35 0 2 647 546 224 0 15 chr12 8230858 8230994 -113026536 + B1F SINE Alu 7 140 -9 2 647 901 304 45 30 chr12 8231231 8231737 -113025793 - L1M5 LINE L1 -2305 3841 3328 2 647 1810 169 79 3 chr12 8232620 8232975 -113024555 - MTD LTR MaLR -13 406 25 2 647 916 160 14 0 chr12 8233193 8233337 -113024193 + B1_Mur4 SINE Alu 1 146 -4 2 647 231 114 0 0 chr12 8233339 8233374 -113024156 + (GGA)n Simple_repeat Simple_repeat 3 37 0 2 647 498 33 0 0 chr12 8233518 8233578 -113023952 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 647 21 82 0 0 chr12 8234881 8234930 -113022600 + AT_rich Low_complexity Low_complexity 1 49 0 2 647 22 88 0 0 chr12 8234995 8235052 -113022478 + AT_rich Low_complexity Low_complexity 1 57 0 3 647 848 175 147 5 chr12 8235722 8235906 -113021624 - B3 SINE B2 -3 213 4 3 647 309 326 0 0 chr12 8235931 8236017 -113021513 - ID_B1 SINE B4 -45 179 94 3 647 1150 291 132 69 chr12 8236443 8237354 -113020176 + L1MCb LINE L1 353 1423 -5328 3 647 1170 55 14 0 chr12 8237354 8237499 -113020031 + B1_Mm SINE Alu 1 147 0 3 647 774 275 134 110 chr12 8237499 8237926 -113019604 + L1MCb LINE L1 1424 1873 -4878 3 647 600 14 0 0 chr12 8237926 8237995 -113019535 + (GGAAA)n Simple_repeat Simple_repeat 1 69 0 3 647 774 275 134 110 chr12 8237995 8238056 -113019474 + L1MCb LINE L1 1874 1955 -4796 3 647 489 144 0 0 chr12 8238160 8238264 -113019266 + (TG)n Simple_repeat Simple_repeat 1 104 0 3 647 646 74 6 0 chr12 8238359 8238461 -113019069 + B2_Mm2 SINE B2 2 107 -109 3 647 280 195 117 117 chr12 8238539 8238736 -113018794 + L1MCb LINE L1 2287 2483 -4268 3 647 599 228 165 3 chr12 8238767 8238946 -113018584 + B3A SINE B2 10 216 0 3 647 396 205 154 8 chr12 8238981 8239104 -113018426 + L1MCb LINE L1 2537 2677 -3887 3 647 357 278 150 13 chr12 8239353 8239506 -113018024 - MER5A DNA MER1_type -4 185 12 3 647 24 0 0 0 chr12 8241232 8241256 -113016274 + AT_rich Low_complexity Low_complexity 1 24 0 3 647 21 0 0 0 chr12 8241848 8241869 -113015661 + AT_rich Low_complexity Low_complexity 1 21 0 3 647 1435 70 16 21 chr12 8242377 8242567 -113014963 - B2_Mm2 SINE B2 -5 190 2 3 647 929 253 62 4 chr12 8242617 8242891 -113014639 + B4A SINE B4 1 290 -2 3 647 2175 265 84 63 chr12 8243027 8244366 -113013164 - Lx6 LINE L1 -24 7436 5860 3 647 472 87 0 89 chr12 8244417 8244518 -113013012 - L1Md_F2 LINE L1 -12 6570 6479 3 647 583 263 80 0 chr12 8244722 8244897 -113012633 + MER5A DNA MER1_type 1 189 0 3 647 636 218 70 35 chr12 8245729 8245900 -113011630 + B3 SINE B2 8 184 -32 3 647 183 80 0 0 chr12 8246718 8246743 -113010787 + (CAT)n Simple_repeat Simple_repeat 1 25 0 3 647 302 244 39 0 chr12 8246874 8246952 -113010578 - ID4 SINE ID -2 81 1 3 647 495 0 0 0 chr12 8247121 8247176 -113010354 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 647 181 365 73 0 chr12 8247719 8247815 -113009715 + MIRc SINE MIR 50 152 -116 3 647 245 345 51 34 chr12 8247950 8248127 -113009403 - MLT1E3 LTR MaLR 0 624 445 3 647 186 240 0 0 chr12 8248146 8248196 -113009334 + GA-rich Low_complexity Low_complexity 3 52 0 3 647 696 279 155 0 chr12 8248309 8248528 -113009002 + B4A SINE B4 40 292 0 3 647 706 232 106 21 chr12 8248685 8248850 -113008680 + B3 SINE B2 1 181 -35 3 647 183 100 0 0 chr12 8248850 8248880 -113008650 + (CATA)n Simple_repeat Simple_repeat 1 30 0 3 647 706 232 106 21 chr12 8248880 8248903 -113008627 + B3 SINE B2 182 204 -12 3 647 1193 48 0 26 chr12 8249404 8249555 -113007975 + B1_Mus2 SINE Alu 1 147 0 3 647 1150 165 5 19 chr12 8250058 8250274 -113007256 - URR1B DNA MER1_type -3 222 10 3 647 828 224 38 24 chr12 8253502 8253712 -113003818 - B3 SINE B2 -3 213 1 3 647 673 247 13 20 chr12 8254066 8254215 -113003315 - RSINE1 SINE B4 -16 149 2 3 647 210 37 0 0 chr12 8254953 8254980 -113002550 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 3 647 577 221 8 16 chr12 8254981 8255110 -113002420 - B1F SINE Alu 0 149 22 3 647 374 220 108 21 chr12 8255118 8255211 -113002319 + B1F SINE Alu 49 149 0 3 647 37 81 0 0 chr12 8255298 8255384 -113002146 + AT_rich Low_complexity Low_complexity 1 86 0 3 647 574 279 32 13 chr12 8255942 8256098 -113001432 + RSINE1 SINE B4 3 161 -4 3 647 306 0 0 0 chr12 8256100 8256134 -113001396 + (CATA)n Simple_repeat Simple_repeat 3 36 0 3 647 267 338 53 15 chr12 8256361 8256493 -113001037 - MIRb SINE MIR -76 192 56 3 648 757 335 67 11 chr12 8257672 8258028 -112999502 + MLT1E1A LTR MaLR 294 669 -11 3 648 22 0 0 0 chr12 8259154 8259176 -112998354 + GC_rich Low_complexity Low_complexity 1 22 0 3 648 277 298 35 9 chr12 8259718 8259833 -112997697 - HAL1 LINE L1 -1583 924 807 3 648 899 190 91 24 chr12 8259950 8260160 -112997370 + URR1A DNA MER1_type 3 226 0 3 648 620 274 0 0 chr12 8260298 8260433 -112997097 - B1F2 SINE Alu -11 138 4 3 648 243 0 0 0 chr12 8260625 8260652 -112996878 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 648 602 291 67 105 chr12 8260719 8261137 -112996393 - Lx8 LINE L1 -6 7467 7066 3 648 261 119 0 0 chr12 8261578 8261620 -112995910 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 648 942 34 0 0 chr12 8263184 8263302 -112994228 + (TC)n Simple_repeat Simple_repeat 1 118 0 3 648 198 0 0 0 chr12 8263302 8263323 -112994207 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 648 271 8 0 0 chr12 8263414 8263462 -112994068 - Lx2 LINE L1 0 6997 6956 3 648 513 35 0 124 chr12 8263639 8263736 -112993794 - L1Md_F2 LINE L1 -1 6581 6497 3 648 225 0 0 0 chr12 8264039 8264064 -112993466 + (TGG)n Simple_repeat Simple_repeat 2 26 0 3 648 569 181 82 61 chr12 8264064 8264204 -112993326 - B1_Mur4 SINE Alu -5 145 1 3 648 265 319 61 17 chr12 8264828 8264943 -112992587 + MIRb SINE MIR 120 239 -29 3 648 2251 104 28 0 chr12 8265098 8265416 -112992114 - ORR1A2 LTR MaLR 0 327 1 3 648 1344 77 11 16 chr12 8265817 8266003 -112991527 - B2_Mm1t SINE B2 -8 185 1 3 648 559 252 13 33 chr12 8266300 8266452 -112991078 + B1_Mur1 SINE Alu 1 149 0 3 648 534 250 52 29 chr12 8266486 8266622 -112990908 + RSINE1 SINE B4 20 158 -7 3 648 1666 244 26 32 chr12 8267732 8267895 -112989635 - L1M2 LINE L1 -817 5474 5315 3 648 644 289 40 40 chr12 8267895 8268093 -112989437 - B3A SINE B2 0 198 1 3 648 1666 263 162 121 chr12 8268093 8269083 -112988447 - L1M2 LINE L1 -815 5328 4405 3 648 595 261 20 41 chr12 8269083 8269279 -112988251 - B3A SINE B2 -5 193 2 3 648 1666 263 162 121 chr12 8269279 8269695 -112987835 - L1M2 LINE L1 -1739 4404 3838 3 648 254 341 15 0 chr12 8269847 8269979 -112987551 + L1M5 LINE L1 2259 2392 -3754 3 648 300 327 114 36 chr12 8270027 8270420 -112987110 + L1M5 LINE L1 3282 3705 -2441 3 648 329 309 82 63 chr12 8271702 8271861 -112985669 + RSINE1 SINE B4 4 165 0 3 648 551 262 85 25 chr12 8271877 8272077 -112985453 + L1M2 LINE L1 5263 5474 -838 3 648 263 196 0 0 chr12 8272074 8272125 -112985405 + Lx8 LINE L1 7034 7084 -389 3 648 284 266 62 31 chr12 8272376 8272473 -112985057 + B4A SINE B4 2 101 -191 3 648 821 320 25 14 chr12 8272512 8272791 -112984739 + L1MCa LINE L1 184 465 -6043 3 648 686 265 53 10 chr12 8272840 8273046 -112984484 + L1MCa LINE L1 746 960 -5548 3 648 491 288 0 8 chr12 8273075 8273208 -112984322 + L1MCa LINE L1 1030 1161 -5347 3 648 568 260 77 77 chr12 8273399 8273737 -112983793 + L1MCa LINE L1 1463 1800 -4708 3 648 350 294 23 12 chr12 8274052 8274138 -112983392 + RSINE1 SINE B4 79 165 0 3 648 1051 166 88 5 chr12 8274177 8274371 -112983159 + B3 SINE B2 3 212 -4 3 648 2097 51 0 0 chr12 8275699 8275954 -112981576 + L1Md_F2 LINE L1 6316 6570 -12 3 648 321 175 0 0 chr12 8275955 8276018 -112981512 + Lx5 LINE L1 5645 5707 -1343 3 648 407 179 51 31 chr12 8276238 8276336 -112981194 - B3 SINE B2 0 216 117 3 648 9178 14 0 0 chr12 8277199 8278225 -112979305 - L1Md_T LINE L1 0 6582 5586 3 648 1359 166 67 12 chr12 8279203 8279490 -112978040 - Lx3B LINE L1 0 7058 6686 3 648 619 297 75 19 chr12 8282062 8282275 -112975255 + L1MEc LINE L1 38 262 -6138 3 648 287 283 81 94 chr12 8282320 8282480 -112975050 + MER74B LTR ERVL 79 236 -386 3 648 967 148 131 45 chr12 8283119 8283317 -112974213 + B3 SINE B2 2 216 0 3 648 378 0 0 0 chr12 8283525 8283567 -112973963 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 3 648 785 209 18 18 chr12 8283567 8283749 -112973781 - B3 SINE B2 -12 183 2 3 648 228 270 0 60 chr12 8283785 8283852 -112973678 - ID4_ SINE ID -19 64 2 3 648 242 274 27 27 chr12 8283963 8284038 -112973492 + ID4_ SINE ID 9 83 0 3 648 280 233 115 55 chr12 8284048 8284230 -112973300 + Charlie5 DNA MER1_type 2432 2624 0 3 648 226 295 107 27 chr12 8286139 8286289 -112971241 + L2c LINE L2 3075 3236 -151 3 648 375 196 46 9 chr12 8286427 8286535 -112970995 - Charlie4a DNA MER1_type -106 402 291 3 648 643 253 85 17 chr12 8286545 8286722 -112970808 + B3A SINE B2 1 189 -9 3 648 46 33 0 0 chr12 8286722 8286782 -112970748 + AT_rich Low_complexity Low_complexity 1 60 0 3 648 26 30 0 0 chr12 8286865 8286898 -112970632 + AT_rich Low_complexity Low_complexity 1 33 0 3 648 1282 188 9 0 chr12 8287087 8287310 -112970220 + URR1B DNA MER1_type 1 225 0 3 648 304 374 9 0 chr12 8287314 8287421 -112970109 + MamRep1894 DNA hAT 3 110 -13 3 648 1163 88 0 0 chr12 8289684 8289832 -112967698 - B1_Mus1 SINE Alu 0 148 1 3 648 23 0 0 0 chr12 8289838 8289861 -112967669 + AT_rich Low_complexity Low_complexity 1 23 0 3 648 249 217 31 62 chr12 8289877 8289941 -112967589 + RSINE1 SINE B4 36 97 -68 3 648 1379 66 44 0 chr12 8290908 8291090 -112966440 + B2_Mm2 SINE B2 3 192 -3 3 648 634 235 19 7 chr12 8292724 8292878 -112964652 + B3 SINE B2 1 156 -60 3 648 230 250 33 0 chr12 8293345 8293405 -112964125 + L1MC4 LINE L1 7761 7822 -220 3 648 245 261 162 104 chr12 8293649 8293686 -112963844 + B4A SINE B4 59 221 -71 3 648 476 212 3 41 chr12 8293686 8293803 -112963727 + B1_Mur4 SINE Alu 1 114 -6 3 648 702 220 67 57 chr12 8294643 8294836 -112962694 + B3A SINE B2 4 198 0 3 648 224 298 32 116 chr12 8294854 8294949 -112962581 - MIRb SINE MIR -177 91 5 3 648 483 63 0 0 chr12 8305083 8305146 -112952384 + (CCG)n Simple_repeat Simple_repeat 3 65 0 3 648 26 0 0 0 chr12 8308598 8308624 -112948906 + GC_rich Low_complexity Low_complexity 1 26 0 3 648 196 288 91 17 chr12 8310457 8310578 -112946952 + MIR SINE MIR 22 150 -118 4 648 1638 58 0 0 chr12 8311360 8311568 -112945962 - L1Md_F2 LINE L1 -1 6581 6374 4 648 297 0 0 0 chr12 8313621 8313654 -112943876 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 648 243 253 110 37 chr12 8313741 8313823 -112943707 + PB1D9 SINE Alu 28 115 -5 4 648 1187 231 38 25 chr12 8313891 8314210 -112943320 + ORR1C2 LTR MaLR 62 384 0 4 648 1073 249 175 0 chr12 8314343 8314668 -112942862 + MTD LTR MaLR 1 382 -37 4 648 1425 70 37 5 chr12 8314974 8315162 -112942368 - B2_Mm2 SINE B2 0 195 2 4 648 1182 81 0 0 chr12 8315251 8315399 -112942131 + B1_Mus1 SINE Alu 1 148 0 4 648 218 119 0 45 chr12 8315687 8315731 -112941799 + CT-rich Low_complexity Low_complexity 2 43 0 4 648 458 33 17 0 chr12 8315733 8315793 -112941737 + (TTCTC)n Simple_repeat Simple_repeat 1 61 0 4 648 742 202 6 6 chr12 8315796 8315970 -112941560 + CT-rich Low_complexity Low_complexity 6 179 0 4 648 522 150 0 0 chr12 8316259 8316339 -112941191 + B1_Mur3 SINE Alu 45 124 -25 4 648 744 133 0 0 chr12 8316343 8316463 -112941067 + (GGAGAA)n Simple_repeat Simple_repeat 1 120 0 4 648 180 0 0 0 chr12 8316483 8316503 -112941027 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 648 504 0 0 0 chr12 8316533 8316589 -112940941 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 648 360 0 0 0 chr12 8316589 8316628 -112940902 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 648 294 228 122 56 chr12 8317879 8317986 -112939544 - ID_B1 SINE B4 -12 212 99 4 648 290 132 0 19 chr12 8318456 8318510 -112939020 + GA-rich Low_complexity Low_complexity 2 54 0 4 648 465 280 24 60 chr12 8318587 8318754 -112938776 + RSINE1 SINE B4 5 165 0 4 648 885 188 0 0 chr12 8318754 8318980 -112938550 + (CA)n Simple_repeat Simple_repeat 1 226 0 4 648 359 279 92 33 chr12 8319264 8319416 -112938114 + RSINE1 SINE B4 2 162 -3 4 648 371 155 12 0 chr12 8319718 8319802 -112937728 + GA-rich Low_complexity Low_complexity 2 86 0 4 648 223 250 14 56 chr12 8320393 8320465 -112937065 - MIRm SINE MIR -109 167 99 4 648 203 295 103 0 chr12 8320568 8320646 -112936884 - L2b LINE L2 -14 3361 3276 4 648 186 366 43 0 chr12 8321138 8321231 -112936299 + MIRm SINE MIR 91 187 -89 4 648 200 378 14 0 chr12 8321527 8321601 -112935929 - L2a LINE L2 -4 3422 3348 4 648 191 354 66 24 chr12 8322159 8322370 -112935160 - L2a LINE L2 -923 2496 2277 4 648 430 340 36 26 chr12 8322454 8322647 -112934883 + MER58A DNA MER1_type 1 195 -29 4 648 212 286 86 0 chr12 8322659 8322729 -112934801 - MER5A DNA MER1_type -108 81 6 4 648 854 177 126 0 chr12 8323430 8323605 -112933925 + B3 SINE B2 15 211 -5 4 648 297 0 0 0 chr12 8323767 8323800 -112933730 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 648 1347 97 48 0 chr12 8323926 8324112 -112933418 + B2_Mm2 SINE B2 1 195 0 4 648 930 133 35 0 chr12 8325080 8325223 -112932307 + B1_Mur4 SINE Alu 2 149 -1 4 648 432 0 0 0 chr12 8326468 8326516 -112931014 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 648 330 132 0 0 chr12 8326747 8326800 -112930730 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 648 246 62 0 0 chr12 8329325 8329357 -112928173 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 4 648 877 167 22 0 chr12 8329357 8329495 -112928035 - B1_Mur2 SINE Alu -8 141 1 4 648 241 392 10 10 chr12 8329552 8329655 -112927875 - Charlie10 DNA MER1_type -2659 163 61 4 648 427 255 68 47 chr12 8329926 8330074 -112927456 + Lx8 LINE L1 7031 7181 -292 4 648 240 305 0 37 chr12 8330082 8330150 -112927380 + (CAGA)n Simple_repeat Simple_repeat 3 68 0 4 648 462 36 0 0 chr12 8330150 8330206 -112927324 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 4 648 240 305 0 37 chr12 8330206 8330246 -112927284 + (CAGA)n Simple_repeat Simple_repeat 1 39 0 4 648 225 289 55 11 chr12 8330300 8330391 -112927139 + RMER15 LTR ERVL 425 519 -56 4 648 258 32 0 0 chr12 8330851 8330882 -112926648 + (GGA)n Simple_repeat Simple_repeat 2 32 0 4 648 192 304 25 12 chr12 8333020 8333100 -112924430 - MIRc SINE MIR -135 133 53 4 648 1297 219 114 47 chr12 8333213 8333572 -112923958 - MTD LTR MaLR -14 405 23 4 648 432 0 0 0 chr12 8333574 8333622 -112923908 + (CATA)n Simple_repeat Simple_repeat 4 51 0 4 648 213 39 0 0 chr12 8333623 8333649 -112923881 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 648 270 0 0 0 chr12 8335331 8335361 -112922169 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 648 803 157 0 41 chr12 8336568 8336714 -112920816 - B1_Mus2 SINE Alu -7 140 1 4 648 658 298 80 60 chr12 8336818 8337168 -112920362 - MER89 LTR ERV1 -7 552 196 4 648 496 274 155 16 chr12 8337874 8338067 -112919463 + B4 SINE B4 67 286 -6 4 648 228 143 0 0 chr12 8339504 8339546 -112917984 + (CCTG)n Simple_repeat Simple_repeat 1 42 0 4 648 969 76 0 0 chr12 8339550 8339681 -112917849 + (TTCC)n Simple_repeat Simple_repeat 1 131 0 4 648 202 182 0 0 chr12 8339736 8339769 -112917761 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 4 648 796 278 30 0 chr12 8341757 8341955 -112915575 + MTE2b LTR MaLR 1 204 -175 4 648 200 35 35 0 chr12 8342017 8342046 -112915484 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 648 2132 97 25 21 chr12 8342209 8342535 -112914995 - ORR1A4 LTR MaLR 0 329 3 4 648 378 330 129 18 chr12 8344753 8345031 -112912499 - Tigger13a DNA MER2_type -452 319 11 4 648 189 279 192 58 chr12 8345032 8345188 -112912342 - MIRb SINE MIR 0 268 92 4 648 227 330 71 55 chr12 8347035 8347218 -112910312 - MIRc SINE MIR -45 223 38 4 648 212 359 91 8 chr12 8347445 8347577 -112909953 + MIRc SINE MIR 81 223 -45 4 648 387 282 63 24 chr12 8347853 8347980 -112909550 - B3 SINE B2 -1 215 84 4 648 202 302 0 16 chr12 8348649 8348713 -112908817 + (GCCTAA)n Simple_repeat Simple_repeat 3 65 0 4 648 351 0 0 0 chr12 8350671 8350710 -112906820 + (TGG)n Simple_repeat Simple_repeat 3 41 0 4 648 297 0 0 0 chr12 8350711 8350744 -112906786 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 648 318 377 65 7 chr12 8350801 8350956 -112906574 - L1M4b LINE L1 -5410 1924 1761 4 648 541 155 17 22 chr12 8351034 8351212 -112906318 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 4 648 456 294 17 70 chr12 8352524 8352696 -112904834 + B3A SINE B2 8 170 -28 4 648 1227 96 17 11 chr12 8352747 8352927 -112904603 + B2_Mm2 SINE B2 1 181 -14 4 648 1164 41 7 0 chr12 8352944 8353090 -112904440 + B1_Mus1 SINE Alu 1 147 -1 4 648 246 32 0 0 chr12 8354164 8354195 -112903335 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 648 240 339 75 108 chr12 8354276 8354583 -112902947 - MLT1C LTR MaLR -166 301 5 4 648 821 276 58 47 chr12 8355979 8356360 -112901170 + L1ME1 LINE L1 5674 6058 -121 4 648 692 269 79 16 chr12 8356498 8356751 -112900779 + L1MC1 LINE L1 5620 5888 -445 4 648 326 250 17 92 chr12 8356898 8357017 -112900513 + L1MC1 LINE L1 6224 6333 0 4 648 901 267 28 5 chr12 8357048 8357266 -112900264 + B4A SINE B4 50 272 -20 4 648 562 101 18 0 chr12 8358032 8358141 -112899389 + (TG)n Simple_repeat Simple_repeat 2 112 0 4 648 270 0 0 0 chr12 8358834 8358864 -112898666 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 648 624 239 7 66 chr12 8358895 8359047 -112898483 - B4A SINE B4 0 292 150 4 648 820 117 8 8 chr12 8359104 8359233 -112898297 + B1_Mur3 SINE Alu 21 149 0 4 648 406 136 0 0 chr12 8359263 8359322 -112898208 + B1_Mur2 SINE Alu 79 137 -12 4 648 369 0 0 0 chr12 8359322 8359363 -112898167 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 4 648 42 36 0 0 chr12 8359589 8359645 -112897885 + AT_rich Low_complexity Low_complexity 1 56 0 4 648 368 323 40 0 chr12 8359737 8359861 -112897669 - L1M5 LINE L1 -3510 2636 2508 4 648 627 14 0 0 chr12 8360581 8360653 -112896877 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 648 222 37 0 0 chr12 8360653 8360679 -112896851 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 648 2033 168 78 13 chr12 8360679 8361066 -112896464 + MTC LTR MaLR 1 412 -9 4 648 428 86 14 0 chr12 8361066 8361136 -112896394 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 648 702 237 160 47 chr12 8361164 8361483 -112896047 + L1MB5 LINE L1 4116 4470 -1670 4 648 356 301 61 76 chr12 8361510 8361708 -112895822 + B4A SINE B4 49 243 -49 4 648 208 245 19 19 chr12 8361752 8361806 -112895724 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 648 998 179 18 32 chr12 8361903 8362122 -112895408 + B3 SINE B2 1 216 0 4 648 261 253 25 0 chr12 8362135 8362214 -112895316 + L1MB5 LINE L1 4529 4609 -1537 4 648 822 130 0 0 chr12 8362218 8362349 -112895181 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 4 648 782 203 81 77 chr12 8362350 8362384 -112895146 + L1MB5 LINE L1 4623 4656 -1490 4 648 435 257 18 0 chr12 8362384 8362493 -112895037 + PB1D7 SINE Alu 1 111 -9 4 648 782 203 81 77 chr12 8362493 8362693 -112894837 + L1MB5 LINE L1 4657 4858 -1288 4 648 735 222 111 0 chr12 8362693 8362864 -112894666 - ID_B1 SINE B4 0 224 35 4 648 569 206 0 0 chr12 8362996 8363098 -112894432 - B1_Mus2 SINE Alu -22 125 24 4 648 250 256 12 82 chr12 8363023 8363108 -112894422 - RLTR25A LTR ERVK -531 572 494 4 648 558 0 0 0 chr12 8363112 8363174 -112894356 + (TTC)n Simple_repeat Simple_repeat 3 64 0 4 648 333 113 356 40 chr12 8363174 8363275 -112894255 - B2_Mm2 SINE B2 -16 179 47 4 648 1257 90 11 0 chr12 8363341 8363518 -112894012 - B2_Mm1t SINE B2 -14 179 1 4 648 1297 274 69 44 chr12 8363519 8364087 -112893443 + L1MB5 LINE L1 5580 6161 -13 4 648 3121 108 30 42 chr12 8364920 8365449 -112892081 - RLTR28 LTR ERVL 0 524 2 4 648 464 200 164 0 chr12 8365836 8365946 -112891584 - RSINE1 SINE B4 -36 129 2 5 648 439 232 0 43 chr12 8366059 8366176 -112891354 - MLT1A1 LTR MaLR 0 408 297 5 648 360 0 0 0 chr12 8366365 8366405 -112891125 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 648 265 236 202 28 chr12 8366478 8366587 -112890943 - B1F SINE Alu 0 149 22 5 648 469 255 123 7 chr12 8366489 8366627 -112890903 - B4 SINE B4 -74 218 65 5 648 440 77 15 0 chr12 8366951 8367016 -112890514 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 5 648 603 108 0 0 chr12 8367007 8367100 -112890430 + (TTCTC)n Simple_repeat Simple_repeat 2 94 0 5 648 758 134 96 15 chr12 8367112 8367248 -112890282 - B1_Mus2 SINE Alu 0 147 1 5 648 570 192 33 33 chr12 8367257 8367408 -112890122 - L1MB7 LINE L1 -1 6177 6027 5 648 303 309 10 41 chr12 8367412 8367510 -112890020 + PB1D10 SINE Alu 18 112 -5 5 648 315 113 0 0 chr12 8367572 8367625 -112889905 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 648 764 320 112 25 chr12 8367647 8368393 -112889137 - L1MB7 LINE L1 -219 5965 5152 5 648 344 71 18 0 chr12 8368573 8368629 -112888901 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 648 706 212 152 9 chr12 8368758 8368982 -112888548 - Lx8 LINE L1 -315 7158 6903 5 648 234 0 0 0 chr12 8369063 8369089 -112888441 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 648 269 250 86 11 chr12 8369291 8369384 -112888146 + PB1D10 SINE Alu 18 117 0 5 648 1742 123 42 7 chr12 8369593 8369880 -112887650 + MTC LTR MaLR 2 298 -123 5 648 210 143 0 87 chr12 8369879 8369925 -112887605 - B1_Mus1 SINE Alu -100 48 7 5 648 722 237 57 17 chr12 8370076 8370252 -112887278 - B3 SINE B2 -4 212 30 5 648 198 103 0 0 chr12 8370255 8370284 -112887246 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 648 628 279 116 13 chr12 8370354 8370579 -112886951 + B4 SINE B4 2 249 -43 5 648 380 254 86 7 chr12 8370567 8370706 -112886824 + B3A SINE B2 49 198 0 5 648 283 264 27 14 chr12 8370712 8370785 -112886745 + B4A SINE B4 219 292 0 5 648 477 0 0 0 chr12 8371820 8371873 -112885657 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 648 227 64 0 21 chr12 8371873 8371921 -112885609 + B2_Mm2 SINE B2 142 188 -7 5 648 294 185 37 0 chr12 8372028 8372109 -112885421 + GA-rich Low_complexity Low_complexity 2 85 0 5 648 649 211 32 120 chr12 8373444 8373660 -112883870 - RLTR11A2 LTR ERVK -330 197 1 5 648 346 287 26 44 chr12 8374132 8374245 -112883285 - MLT1A0 LTR MaLR 0 365 255 5 648 357 24 0 0 chr12 8374293 8374335 -112883195 + (TCC)n Simple_repeat Simple_repeat 2 43 0 5 648 864 121 78 0 chr12 8374335 8374476 -112883054 - B2_Mm2 SINE B2 -8 187 36 5 648 226 329 63 42 chr12 8374631 8374774 -112882756 - L2c LINE L2 -235 3152 3007 5 648 198 240 0 0 chr12 8374812 8374862 -112882668 + (TATG)n Simple_repeat Simple_repeat 1 50 0 5 648 548 75 11 86 chr12 8374859 8375034 -112882496 + (TGG)n Simple_repeat Simple_repeat 3 164 0 5 648 183 80 0 0 chr12 8375030 8375055 -112882475 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 648 333 110 0 40 chr12 8375061 8375137 -112882393 + (TGG)n Simple_repeat Simple_repeat 1 73 0 5 648 270 57 0 54 chr12 8375135 8375161 -112882369 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 648 591 51 0 0 chr12 8375161 8375240 -112882290 + (GA)n Simple_repeat Simple_repeat 1 79 0 5 648 270 57 0 54 chr12 8375240 8375269 -112882261 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 648 180 152 0 0 chr12 8375266 8375299 -112882231 + (TGG)n Simple_repeat Simple_repeat 3 35 0 5 648 249 119 50 17 chr12 8375299 8375359 -112882171 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 648 506 89 0 118 chr12 8375360 8375563 -112881967 + (TGG)n Simple_repeat Simple_repeat 1 179 0 5 648 490 250 42 103 chr12 8375571 8375736 -112881794 - RSINE1 SINE B4 0 165 11 5 648 777 157 7 7 chr12 8376509 8376644 -112880886 + B1_Mur3 SINE Alu 14 148 -1 5 648 747 118 0 0 chr12 8376673 8376808 -112880722 + (GA)n Simple_repeat Simple_repeat 2 136 0 5 648 246 128 0 0 chr12 8376885 8376924 -112880606 + (TTC)n Simple_repeat Simple_repeat 1 39 0 5 648 1163 55 0 0 chr12 8376924 8377069 -112880461 - B1_Mus2 SINE Alu -1 146 2 5 648 288 0 0 0 chr12 8377573 8377605 -112879925 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 648 490 299 55 17 chr12 8378087 8378420 -112879110 + MLT1A0 LTR MaLR 8 408 0 5 648 461 321 90 43 chr12 8379991 8380225 -112877305 - B4A SINE B4 -16 276 32 5 648 371 114 13 79 chr12 8380315 8380391 -112877139 + ORR1C1 LTR MaLR 1 71 -307 5 648 1154 58 7 0 chr12 8380401 8380556 -112876974 - B2_Mm2 SINE B2 -38 157 2 5 648 248 209 9 0 chr12 8380556 8380613 -112876917 + ORR1C1 LTR MaLR 248 311 -73 5 648 527 241 80 0 chr12 8380898 8381035 -112876495 + B3A SINE B2 15 162 -36 5 648 396 0 0 0 chr12 8381038 8381082 -112876448 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 648 360 0 0 0 chr12 8381082 8381121 -112876409 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 648 1721 244 21 58 chr12 8381166 8381679 -112875851 + Lx8 LINE L1 6980 7473 0 5 648 901 142 0 28 chr12 8381719 8381864 -112875666 - B1_Mus1 SINE Alu -7 141 1 5 648 719 225 0 27 chr12 8381940 8382086 -112875444 - B1_Mur1 SINE Alu -2 147 6 5 648 327 256 10 72 chr12 8382004 8382101 -112875429 - B4A SINE B4 -124 168 78 5 648 855 201 75 0 chr12 8382219 8382418 -112875112 + B3 SINE B2 3 216 0 5 648 1312 51 67 6 chr12 8382511 8382690 -112874840 - B2_Mm2 SINE B2 -5 190 1 5 648 999 86 0 0 chr12 8383314 8383453 -112874077 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 5 648 829 171 7 0 chr12 8383455 8383595 -112873935 - B1_Mur2 SINE Alu -8 141 1 5 648 257 328 75 19 chr12 8383685 8383993 -112873537 - L1ME4a LINE L1 -156 5968 5644 5 648 1044 75 7 7 chr12 8384129 8384276 -112873254 + B1_Mus1 SINE Alu 1 147 -1 5 648 191 128 51 0 chr12 8384473 8384512 -112873018 + G-rich Low_complexity Low_complexity 6 46 0 5 648 334 293 97 55 chr12 8385193 8385374 -112872156 + MIRb SINE MIR 10 204 -64 5 648 1083 291 97 13 chr12 8385475 8385928 -112871602 + RMER5 LTR ERV1 34 524 -10 5 648 1170 150 37 14 chr12 8386380 8386597 -112870933 - URR1A DNA MER1_type -2 224 3 5 648 225 143 0 0 chr12 8387420 8387455 -112870075 + PB1D9 SINE Alu 1 35 -85 5 648 850 140 0 14 chr12 8387536 8387674 -112869856 + B1_Mus1 SINE Alu 1 136 -12 5 648 204 40 0 0 chr12 8387675 8387700 -112869830 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 649 28 29 0 0 chr12 8389791 8389826 -112867704 + AT_rich Low_complexity Low_complexity 1 35 0 5 649 858 46 125 44 chr12 8389826 8389962 -112867568 - B1_Mus1 SINE Alu 0 148 2 5 649 1521 32 26 5 chr12 8390072 8390262 -112867268 - B2_Mm2 SINE B2 0 195 2 5 649 949 168 207 0 chr12 8390268 8390447 -112867083 - B3 SINE B2 0 216 1 5 649 530 321 30 4 chr12 8390690 8390877 -112866653 + MLT1E1 LTR MaLR 423 632 -22 5 649 319 301 37 49 chr12 8391219 8391383 -112866147 - RLTR12B LTR ERVK 0 528 367 5 649 1683 163 49 41 chr12 8391406 8391796 -112865734 + RMER17C LTR ERVK 18 410 0 5 649 288 99 14 27 chr12 8391806 8391879 -112865651 + (TTTG)n Simple_repeat Simple_repeat 2 73 0 5 649 714 272 75 36 chr12 8391980 8392258 -112865272 - B4A SINE B4 -2 290 2 5 649 465 103 0 0 chr12 8392728 8392796 -112864734 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 649 876 224 111 28 chr12 8392841 8393094 -112864436 - B4A SINE B4 -18 274 1 5 649 208 338 116 14 chr12 8393978 8394125 -112863405 + MIRb SINE MIR 91 252 -16 5 649 360 0 0 0 chr12 8394309 8394349 -112863181 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 649 473 58 14 0 chr12 8394781 8394850 -112862680 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 649 216 143 48 0 chr12 8396493 8396535 -112860995 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 649 336 48 0 0 chr12 8396653 8396695 -112860835 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 649 422 100 14 8 chr12 8396697 8396796 -112860734 - B2_Mm2 SINE B2 -11 184 47 5 649 1213 62 14 0 chr12 8397152 8397298 -112860232 + B1_Mus1 SINE Alu 1 148 0 5 649 212 146 0 47 chr12 8397301 8397344 -112860186 + A-rich Low_complexity Low_complexity 2 42 0 5 649 670 259 0 15 chr12 8397512 8397645 -112859885 + B3 SINE B2 3 133 -83 5 649 2774 166 141 21 chr12 8397645 8397958 -112859572 + RMER6C LTR ERVK 2 329 -361 5 649 1209 73 6 11 chr12 8397958 8398138 -112859392 + (GAA)n Simple_repeat Simple_repeat 2 180 0 5 649 2774 166 141 21 chr12 8398138 8398284 -112859246 + RMER6C LTR ERVK 330 527 -163 5 649 895 67 48 12 chr12 8398284 8398451 -112859079 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 5 649 2774 156 89 189 chr12 8398451 8398789 -112858741 + RMER6C LTR ERVK 528 720 0 5 649 317 253 22 22 chr12 8398790 8398879 -112858651 + B3 SINE B2 128 216 0 5 649 22 35 0 0 chr12 8398885 8398914 -112858616 + AT_rich Low_complexity Low_complexity 1 29 0 5 649 512 151 0 65 chr12 8400377 8400469 -112857061 + B1F SINE Alu 63 148 -1 5 649 393 22 0 0 chr12 8400498 8400544 -112856986 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 649 333 276 0 13 chr12 8400738 8400815 -112856715 + ID4_ SINE ID 1 76 -7 5 649 459 0 0 0 chr12 8401092 8401143 -112856387 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 649 576 0 0 0 chr12 8401144 8401208 -112856322 + (GTTTG)n Simple_repeat Simple_repeat 2 65 0 5 649 1116 72 0 0 chr12 8401208 8401346 -112856184 - B1_Mus1 SINE Alu -9 139 2 5 649 849 181 14 0 chr12 8401397 8401535 -112855995 + B1_Mus1 SINE Alu 7 146 -2 5 649 324 0 0 0 chr12 8402168 8402204 -112855326 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 649 1228 41 7 0 chr12 8403174 8403319 -112854211 + B1_Mm SINE Alu 2 147 0 6 649 428 288 124 60 chr12 8403740 8403973 -112853557 - MLT1C LTR MaLR -219 248 1 6 649 251 338 131 13 chr12 8404300 8404453 -112853077 - MIRb SINE MIR -45 223 53 6 649 2228 150 62 37 chr12 8404468 8404869 -112852661 + MTC LTR MaLR 3 413 -8 6 649 909 140 49 0 chr12 8406117 8406260 -112851270 + B1_Mur4 SINE Alu 1 150 0 6 649 1416 37 0 14 chr12 8406267 8406487 -112851043 + (GGGAGA)n Simple_repeat Simple_repeat 1 217 0 6 649 309 292 189 18 chr12 8407037 8407201 -112850329 - MER53 DNA hAT -1 192 1 6 649 1388 173 0 0 chr12 8408040 8408265 -112849265 + URR1B DNA MER1_type 1 225 0 6 649 267 193 0 0 chr12 8409632 8409720 -112847810 + GA-rich Low_complexity Low_complexity 1 88 0 6 649 3188 6 5 47 chr12 8409981 8410364 -112847166 + IAPLTR1_Mm LTR ERVK 1 367 0 6 649 987 86 159 0 chr12 8410364 8410527 -112847003 + IAPEz-int LTR ERVK 8 196 -6285 6 649 7875 78 71 16 chr12 8410498 8411732 -112845798 + IAPEz-int LTR ERVK 67 1313 -5168 6 649 20486 13 0 0 chr12 8411731 8414075 -112843455 + IAPEz-int LTR ERVK 3210 5554 -927 6 649 6726 29 2 6 chr12 8414068 8414882 -112842648 + IAPEz-int LTR ERVK 5671 6481 0 6 649 3188 6 5 47 chr12 8414882 8415265 -112842265 + IAPLTR1_Mm LTR ERVK 1 367 0 6 649 1166 72 0 0 chr12 8415521 8415660 -112841870 + B1_Mus1 SINE Alu 3 141 -7 6 649 453 50 0 0 chr12 8415664 8415724 -112841806 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 649 865 186 7 27 chr12 8415815 8415964 -112841566 - B1_Mur2 SINE Alu -1 148 3 6 649 296 212 0 29 chr12 8417228 8417296 -112840234 + Lx8 LINE L1 7407 7472 -1 6 649 1235 272 12 36 chr12 8417945 8418281 -112839249 - MER21B LTR ERV1 -114 749 422 6 649 637 233 250 12 chr12 8418302 8418702 -112838828 - Lx8 LINE L1 -56 7417 6923 6 649 907 321 97 6 chr12 8418722 8419073 -112838457 - MER21B LTR ERV1 -480 383 1 6 649 335 142 286 103 chr12 8419333 8419377 -112838153 - B2_Mm2 SINE B2 0 195 162 6 649 186 43 0 0 chr12 8419377 8419400 -112838130 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 649 335 142 286 103 chr12 8419400 8419481 -112838049 - B2_Mm2 SINE B2 -34 161 47 6 649 1310 90 23 0 chr12 8419528 8419705 -112837825 - B2_Mm2 SINE B2 -13 182 2 6 649 225 0 0 0 chr12 8419718 8419743 -112837787 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 6 649 1187 221 52 0 chr12 8419743 8420014 -112837516 - Lx5 LINE L1 -28 7022 6738 6 649 593 242 96 30 chr12 8420016 8420182 -112837348 - ID_B1 SINE B4 -46 178 2 6 649 845 108 7 52 chr12 8420365 8420501 -112837029 + B2_Mm2 SINE B2 3 132 -63 6 649 831 86 0 0 chr12 8420501 8420618 -112836912 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 6 649 912 0 24 60 chr12 8421197 8421365 -112836165 + (GGAGA)n Simple_repeat Simple_repeat 2 163 0 6 649 591 306 138 51 chr12 8421665 8422020 -112835510 + LTR40b LTR ERVL 77 462 0 6 649 1307 88 0 21 chr12 8422151 8422310 -112835220 + B2_Mm1a SINE B2 2 160 -33 6 649 486 0 0 0 chr12 8422310 8422364 -112835166 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6 649 1307 88 0 21 chr12 8422364 8422391 -112835139 + B2_Mm1a SINE B2 161 184 -9 6 649 2069 147 90 0 chr12 8422918 8423273 -112834257 - ORR1B1 LTR MaLR -7 387 1 6 649 247 311 128 64 chr12 8423396 8423537 -112833993 - MLT2B3 LTR ERVL -198 356 207 6 649 243 0 0 0 chr12 8424288 8424315 -112833215 + (A)n Simple_repeat Simple_repeat 1 27 0 6 649 332 258 6 0 chr12 8424738 8424916 -112832614 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 649 455 206 18 6 chr12 8424988 8425154 -112832376 + (TG)n Simple_repeat Simple_repeat 1 168 0 6 649 1442 70 38 0 chr12 8426719 8426905 -112830625 - B2_Mm2 SINE B2 -1 194 2 6 649 770 163 31 0 chr12 8426934 8427063 -112830467 + B1_Mus2 SINE Alu 15 147 0 6 649 189 139 0 0 chr12 8427063 8427106 -112830424 + (A)n Simple_repeat Simple_repeat 1 43 0 6 649 678 272 0 0 chr12 8427150 8427297 -112830233 + B1F SINE Alu 1 147 -2 6 649 508 270 48 0 chr12 8427362 8427488 -112830042 - ID_B1 SINE B4 -12 212 81 6 649 402 308 59 21 chr12 8427488 8427674 -112829856 - Charlie1a DNA MER1_type -61 1394 1202 6 649 279 269 37 49 chr12 8427773 8427787 -112829743 - B1F SINE Alu -1 148 138 6 649 184 30 0 57 chr12 8427787 8427822 -112829708 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 6 649 279 269 37 49 chr12 8427822 8427889 -112829641 - B1F SINE Alu -12 137 68 6 649 416 253 0 0 chr12 8427889 8427905 -112829625 - ID_B1 SINE B4 -12 212 130 6 649 294 296 87 47 chr12 8428143 8428292 -112829238 - MLT1A LTR MaLR -219 155 1 6 649 320 330 53 9 chr12 8428326 8428439 -112829091 - B4 SINE B4 -167 125 8 6 649 758 208 19 19 chr12 8428481 8428643 -112828887 - B3 SINE B2 -6 210 49 6 649 267 31 0 0 chr12 8428722 8428754 -112828776 + (TCCCC)n Simple_repeat Simple_repeat 2 33 0 6 649 825 87 0 0 chr12 8428758 8428873 -112828657 + (TTCC)n Simple_repeat Simple_repeat 4 118 0 6 649 856 203 0 13 chr12 8428887 8429037 -112828493 - B1_Mur2 SINE Alu -1 148 1 6 649 895 215 49 24 chr12 8429046 8429251 -112828279 - B3 SINE B2 0 216 7 6 649 365 222 211 0 chr12 8430004 8430094 -112827436 + PB1D10 SINE Alu 3 111 -6 6 649 973 177 121 0 chr12 8430601 8430799 -112826731 - URR1A DNA MER1_type 0 226 5 6 649 462 18 0 0 chr12 8432535 8432590 -112824940 + (TTGG)n Simple_repeat Simple_repeat 2 56 0 6 649 520 170 122 9 chr12 8432607 8432714 -112824816 + B1_Mus2 SINE Alu 1 119 -1 6 649 323 281 62 58 chr12 8432743 8432985 -112824545 - L1MD1 LINE L1 -9 6233 5991 6 649 984 76 7 30 chr12 8433412 8433547 -112823983 - B1_Mus1 SINE Alu -16 132 1 6 649 1596 209 99 13 chr12 8433622 8433633 -112823897 + MTD LTR MaLR 4 15 -404 6 649 231 36 0 0 chr12 8433633 8433661 -112823869 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 6 649 1596 209 99 13 chr12 8433661 8433759 -112823771 + MTD LTR MaLR 16 113 -306 6 649 435 38 0 0 chr12 8433759 8433812 -112823718 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 6 649 1596 209 99 13 chr12 8433812 8434084 -112823446 + MTD LTR MaLR 114 418 -1 6 649 180 200 133 0 chr12 8434950 8434995 -112822535 + L2c LINE L2 3105 3155 -232 6 649 443 250 0 15 chr12 8436652 8436755 -112820775 + PB1D10 SINE Alu 25 146 -3 6 649 2097 103 86 7 chr12 8437452 8437754 -112819776 + ORR1A3 LTR MaLR 1 326 0 6 649 1687 163 21 62 chr12 8438103 8438230 -112819300 + RLTR20A LTR ERVK 2 213 -328 6 649 684 36 0 0 chr12 8438230 8438313 -112819217 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 649 1687 153 71 33 chr12 8438313 8438540 -112818990 + RLTR20A LTR ERVK 214 439 -102 6 649 342 0 0 0 chr12 8438540 8438578 -112818952 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 649 1687 153 71 33 chr12 8438578 8438658 -112818872 + RLTR20A LTR ERVK 440 540 -1 6 649 602 284 88 40 chr12 8439147 8439444 -112818086 - L1MD3 LINE L1 -30 7965 7655 6 649 649 268 93 16 chr12 8439493 8439686 -112817844 - ID_B1 SINE B4 -16 208 1 6 649 464 219 88 14 chr12 8439775 8439923 -112817607 - L1MB4 LINE L1 -35 6145 5987 6 649 1488 42 2 0 chr12 8440082 8440563 -112816967 + (TG)n Simple_repeat Simple_repeat 1 482 0 6 649 770 260 62 33 chr12 8440665 8440876 -112816654 - B4 SINE B4 -74 218 2 6 649 315 0 0 0 chr12 8441714 8441749 -112815781 + (CCTG)n Simple_repeat Simple_repeat 1 35 0 6 649 332 336 32 16 chr12 8441938 8442062 -112815468 + MIRb SINE MIR 28 153 -115 6 649 499 303 112 21 chr12 8442069 8442346 -112815184 + B4 SINE B4 2 272 -20 6 649 195 100 0 0 chr12 8442354 8442384 -112815146 + (CAAT)n Simple_repeat Simple_repeat 1 30 0 6 649 1431 246 35 9 chr12 8442386 8442726 -112814804 + MTD LTR MaLR 48 396 -23 6 649 3297 28 5 66 chr12 8442726 8443148 -112814382 + MTA_Mm LTR MaLR 1 396 0 6 649 253 297 64 62 chr12 8444251 8444430 -112813100 - MIRm SINE MIR -23 253 74 6 649 1206 172 108 0 chr12 8444445 8444649 -112812881 - URR1A DNA MER1_type 0 226 1 6 649 504 0 0 0 chr12 8445380 8445436 -112812094 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 649 782 249 17 17 chr12 8445679 8445855 -112811675 + ID_B1 SINE B4 8 183 -41 6 649 844 149 7 28 chr12 8445864 8446009 -112811521 + B1_Mur3 SINE Alu 8 149 0 6 649 267 274 16 0 chr12 8446550 8446612 -112810918 + MIRm SINE MIR 211 273 -3 6 649 196 288 68 0 chr12 8447082 8447155 -112810375 + L2c LINE L2 3112 3189 -198 6 649 226 342 18 27 chr12 8448191 8448302 -112809228 + MIRb SINE MIR 78 187 -81 6 649 245 303 13 13 chr12 8448370 8448447 -112809083 + MIR SINE MIR 49 125 -137 6 649 1454 134 14 0 chr12 8448544 8448767 -112808763 - URR1A DNA MER1_type 0 226 1 6 649 718 259 42 36 chr12 8449388 8449556 -112807974 - ID_B1 SINE B4 -6 218 50 6 649 705 56 0 0 chr12 8449802 8449892 -112807638 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 649 389 340 69 16 chr12 8449958 8450146 -112807384 - MIRb SINE MIR -6 262 65 6 649 209 320 0 0 chr12 8450336 8450386 -112807144 + MIR SINE MIR 20 69 -193 6 649 1067 134 6 0 chr12 8451315 8451494 -112806036 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 649 392 147 0 13 chr12 8451496 8451572 -112805958 + GA-rich Low_complexity Low_complexity 3 77 0 6 649 373 262 120 33 chr12 8452803 8452953 -112804577 - MLT1D LTR MaLR -342 163 1 6 649 186 357 49 57 chr12 8452963 8453085 -112804445 + MIRb SINE MIR 37 157 -111 6 649 418 38 0 0 chr12 8453122 8453175 -112804355 - B2_Mm1t SINE B2 -14 179 127 6 649 1250 96 17 0 chr12 8453210 8453387 -112804143 - B2_Mm2 SINE B2 -14 181 2 6 649 312 221 109 50 chr12 8453478 8453597 -112803933 - MIRb SINE MIR -128 140 15 6 649 260 20 82 0 chr12 8455302 8455351 -112802179 + (TTG)n Simple_repeat Simple_repeat 2 54 0 6 649 719 327 58 10 chr12 8455351 8455558 -112801972 - ID_B1 SINE B4 -1 223 7 6 649 930 139 7 0 chr12 8456093 8456230 -112801300 + B1_Mur4 SINE Alu 2 139 -11 6 649 316 0 0 43 chr12 8456231 8456277 -112801253 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 649 332 268 9 76 chr12 8458967 8459072 -112798458 + RSINE1 SINE B4 68 165 0 7 649 1658 166 59 86 chr12 8459197 8459606 -112797924 - RMER10B LTR ERVL 0 398 1 7 649 354 280 43 11 chr12 8459618 8459712 -112797818 + MLT1J2 LTR MaLR 34 130 -318 7 649 650 268 80 21 chr12 8459859 8460046 -112797484 + MIRb SINE MIR 69 266 -2 7 649 207 88 0 0 chr12 8460465 8460499 -112797031 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 7 649 872 152 76 0 chr12 8460510 8460642 -112796888 - B1_Mus1 SINE Alu -6 142 1 7 649 252 317 96 61 chr12 8460654 8460939 -112796591 - L1MD LINE L1 -751 5491 5199 7 649 463 217 113 0 chr12 8460976 8461091 -112796439 - B1F SINE Alu -21 128 1 7 649 255 100 67 0 chr12 8461803 8461863 -112795667 + C-rich Low_complexity Low_complexity 2 65 0 7 649 248 309 19 76 chr12 8463168 8463273 -112794257 - RSINE1 SINE B4 0 165 67 7 649 872 152 268 0 chr12 8464463 8464627 -112792903 - B3 SINE B2 -6 210 3 7 649 21 0 0 0 chr12 8464627 8464648 -112792882 + AT_rich Low_complexity Low_complexity 1 21 0 7 649 297 0 0 0 chr12 8464652 8464685 -112792845 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 7 649 287 253 91 40 chr12 8464687 8464786 -112792744 - PB1D9 SINE Alu -16 104 1 7 649 311 267 0 0 chr12 8465058 8465118 -112792412 + RSINE1 SINE B4 42 101 -64 7 649 224 246 76 15 chr12 8465152 8465218 -112792312 + B1F1 SINE Alu 68 137 -12 7 649 924 267 31 114 chr12 8465767 8465929 -112791601 + B4 SINE B4 2 152 -140 7 649 2422 122 24 37 chr12 8465929 8466108 -112791422 - ORR1C1 LTR MaLR 0 378 205 7 649 1206 38 150 0 chr12 8466108 8466268 -112791262 + B2_Mm2 SINE B2 2 185 -10 7 649 888 94 0 0 chr12 8466268 8466396 -112791134 + (GA)n Simple_repeat Simple_repeat 2 129 0 7 649 441 0 0 0 chr12 8466396 8466444 -112791086 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 649 2422 122 24 37 chr12 8466444 8466645 -112790885 - ORR1C1 LTR MaLR -174 204 3 7 649 924 267 31 114 chr12 8466645 8466799 -112790731 + B4 SINE B4 153 292 0 7 649 204 118 29 0 chr12 8467237 8467271 -112790259 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 7 649 187 54 54 0 chr12 8467899 8467936 -112789594 + (CCCCCA)n Simple_repeat Simple_repeat 1 39 0 7 649 192 304 22 0 chr12 8467936 8467982 -112789548 + MER5A DNA MER1_type 52 98 -91 7 649 288 311 11 22 chr12 8468002 8468094 -112789436 - MLT1A0 LTR MaLR -17 450 360 7 649 459 270 127 13 chr12 8468170 8468320 -112789210 - MLT1A0 LTR MaLR -198 167 1 7 649 1222 55 0 7 chr12 8468651 8468799 -112788731 - B1_Mm SINE Alu 0 147 1 7 649 779 273 5 41 chr12 8468909 8469127 -112788403 + B3 SINE B2 3 212 -4 7 649 545 291 106 14 chr12 8469921 8470203 -112787327 + RMER17C LTR ERVK 33 340 -70 7 649 224 218 52 52 chr12 8470335 8470451 -112787079 + (CACCC)n Simple_repeat Simple_repeat 5 120 0 7 649 1047 231 92 4 chr12 8470699 8470960 -112786570 + LTR84a LTR ERVL 3 286 -471 7 649 468 0 0 0 chr12 8471490 8471542 -112785988 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 649 229 230 19 39 chr12 8472327 8472353 -112785177 + ORR1B1-int LTR MaLR 632 733 -776 7 649 536 155 0 45 chr12 8472353 8472431 -112785099 + B1_Mus2 SINE Alu 9 86 -61 7 649 578 117 8 0 chr12 8472431 8472551 -112784979 + (CA)n Simple_repeat Simple_repeat 2 122 0 7 649 536 184 12 429 chr12 8472551 8472573 -112784957 + B1_Mus2 SINE Alu 87 103 -17 7 649 812 299 73 7 chr12 8472573 8472846 -112784684 + B4A SINE B4 2 292 0 7 649 673 230 121 0 chr12 8473750 8473915 -112783615 - B3 SINE B2 -11 205 21 7 649 253 235 127 42 chr12 8473911 8473982 -112783548 - MLT1C LTR MaLR -34 433 357 7 649 250 151 56 19 chr12 8474021 8474075 -112783455 - MLT1C LTR MaLR -213 161 106 7 649 495 0 0 0 chr12 8474409 8474464 -112783066 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 649 446 98 12 0 chr12 8474776 8474858 -112782672 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 649 30 0 0 0 chr12 8475818 8475848 -112781682 + AT_rich Low_complexity Low_complexity 1 30 0 7 649 894 286 81 33 chr12 8476138 8476409 -112781121 - B4A SINE B4 -1 291 8 7 649 501 17 0 0 chr12 8476802 8476860 -112780670 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 649 297 0 0 0 chr12 8476860 8476892 -112780638 + (CG)n Simple_repeat Simple_repeat 1 33 0 7 649 528 283 20 46 chr12 8477652 8477804 -112779726 - B1F SINE Alu -1 148 1 7 649 1045 222 5 20 chr12 8477804 8477878 -112779652 - ID SINE ID -147 77 7 7 649 1316 83 39 6 chr12 8478598 8478780 -112778750 + B2_Mm2 SINE B2 2 189 -6 7 649 342 255 173 42 chr12 8478975 8479143 -112778387 - MER90a LTR ERV1 -172 442 253 7 649 226 237 45 12 chr12 8480171 8480237 -112777293 + MIRc SINE MIR 120 183 -93 7 649 375 23 0 0 chr12 8480266 8480310 -112777220 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 649 1754 129 38 3 chr12 8480780 8481067 -112776463 + Lx LINE L1 6356 6652 -2 7 649 342 0 0 0 chr12 8481563 8481601 -112775929 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 649 205 377 0 0 chr12 8483532 8483601 -112773929 + MIRb SINE MIR 97 165 -103 7 649 192 77 0 0 chr12 8483893 8483919 -112773611 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 7 649 248 305 76 21 chr12 8484228 8484370 -112773160 + MIR3 SINE MIR 22 165 -43 7 649 325 188 26 35 chr12 8484959 8485075 -112772455 + CT-rich Low_complexity Low_complexity 3 117 0 7 649 363 23 0 0 chr12 8485083 8485127 -112772403 + (TCTCTG)n Simple_repeat Simple_repeat 2 45 0 7 649 551 84 11 0 chr12 8485131 8485226 -112772304 + (TG)n Simple_repeat Simple_repeat 1 96 0 7 649 443 260 38 9 chr12 8485229 8485334 -112772196 - B3 SINE B2 -69 147 40 7 649 513 264 11 39 chr12 8487529 8487676 -112769854 + ID_B1 SINE B4 9 153 -139 7 649 253 235 259 0 chr12 8487606 8487691 -112769839 + PB1D10 SINE Alu 6 112 -5 7 649 5217 62 1 6 chr12 8487767 8488432 -112769098 + L1Md_F2 LINE L1 5921 6582 0 7 649 722 231 47 31 chr12 8489302 8489494 -112768036 - B3A SINE B2 -2 196 2 7 649 2089 158 58 16 chr12 8489589 8489968 -112767562 - MTB_Mm LTR MaLR -8 399 5 7 649 588 186 58 17 chr12 8489966 8490086 -112767444 - B3 SINE B2 -87 129 5 7 649 427 266 89 44 chr12 8490205 8490395 -112767135 + RMER20A LTR ERVK 191 388 -239 7 649 324 0 0 0 chr12 8490421 8490457 -112767073 + (A)n Simple_repeat Simple_repeat 1 36 0 7 649 288 214 15 54 chr12 8490503 8490604 -112766926 - RMER1C Other Other -872 470 277 7 649 1251 162 34 144 chr12 8490600 8490784 -112766746 + RMER1C Other Other 1026 1195 -147 7 649 480 35 0 0 chr12 8490784 8490842 -112766688 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 649 1251 162 34 144 chr12 8490842 8491010 -112766520 + RMER1C Other Other 1196 1339 -3 7 649 302 279 29 0 chr12 8491336 8491404 -112766126 - Charlie12 DNA MER1_type -2797 76 7 7 649 249 208 72 72 chr12 8492583 8492666 -112764864 + MLT1A LTR MaLR 80 162 -212 7 649 180 152 0 0 chr12 8492677 8492710 -112764820 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 7 649 396 0 0 0 chr12 8492711 8492755 -112764775 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 649 1709 26 0 0 chr12 8493038 8493231 -112764299 + B2_Mm1a SINE B2 1 193 0 7 649 707 204 23 86 chr12 8495675 8495895 -112761635 + Lx7 LINE L1 7491 7696 0 7 649 469 287 80 37 chr12 8496216 8496315 -112761215 + B4A SINE B4 78 187 -105 7 649 194 0 39 0 chr12 8496315 8496341 -112761189 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 7 649 469 287 80 37 chr12 8496341 8496429 -112761101 + B4A SINE B4 188 273 -19 7 649 500 272 19 3 chr12 8496520 8497451 -112760079 + (CA)n Simple_repeat Simple_repeat 1 945 0 7 649 479 269 20 6 chr12 8497657 8498013 -112759517 + (CA)n Simple_repeat Simple_repeat 1 361 0 7 649 463 272 26 11 chr12 8498047 8498405 -112759125 + (CA)n Simple_repeat Simple_repeat 1 363 0 7 649 378 211 0 53 chr12 8499839 8499914 -112757616 + ID4_ SINE ID 3 73 -10 7 649 198 0 0 0 chr12 8499962 8499984 -112757546 + (CTG)n Simple_repeat Simple_repeat 1 22 0 7 649 418 292 58 0 chr12 8500005 8500125 -112757405 + B4A SINE B4 2 128 -164 1 649 241 59 0 0 chr12 8500105 8500139 -112757391 + MTD LTR MaLR 386 419 0 2 649 414 0 0 0 chr12 8500524 8500570 -112756960 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 649 243 61 0 0 chr12 8500570 8500602 -112756928 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 649 698 247 32 7 chr12 8500698 8500853 -112756677 + MLT1F2 LTR MaLR 400 558 -2 5 649 263 250 58 70 chr12 8500853 8500939 -112756591 + MIR SINE MIR 178 262 0 6 649 1098 195 33 24 chr12 8501071 8501281 -112756249 + ID_B1 SINE B4 2 213 -11 7 649 474 303 13 26 chr12 8501930 8502086 -112755444 + MER5A DNA MER1_type 7 160 -29 8 649 1200 73 70 32 chr12 8502175 8502325 -112755205 + B2_Mm1t SINE B2 2 160 -33 9 649 396 0 0 0 chr12 8502325 8502369 -112755161 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1 649 1200 73 70 32 chr12 8502369 8502403 -112755127 + B2_Mm1t SINE B2 161 193 0 9 649 270 0 0 0 chr12 8503605 8503635 -112753895 + (A)n Simple_repeat Simple_repeat 1 30 0 1 649 243 0 0 0 chr12 8503798 8503825 -112753705 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 649 469 148 184 53 chr12 8503892 8504006 -112753524 - B1_Mur4 SINE Alu -21 129 1 1 649 21 0 0 0 chr12 8504066 8504087 -112753443 + AT_rich Low_complexity Low_complexity 1 21 0 1 649 203 370 40 10 chr12 8508086 8508187 -112749343 + L2c LINE L2 3263 3366 -21 1 649 348 24 0 0 chr12 8508634 8508675 -112748855 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 649 1236 61 0 0 chr12 8509220 8509368 -112748162 + B1_Mus1 SINE Alu 1 148 0 1 649 7748 45 15 16 chr12 8509679 8509884 -112747646 + L1Md_F2 LINE L1 5597 5797 -785 1 649 1708 26 0 0 chr12 8509884 8510076 -112747454 + B2_Mm1a SINE B2 1 192 -1 1 649 7748 45 15 16 chr12 8510076 8510888 -112746642 + L1Md_F2 LINE L1 5798 6582 0 1 649 501 97 0 0 chr12 8510960 8511032 -112746498 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 649 280 261 63 87 chr12 8511218 8511344 -112746186 + Charlie5 DNA MER1_type 2 124 -2500 2 649 677 252 31 90 chr12 8511355 8511577 -112745953 + ID_B1 SINE B4 3 211 -13 2 649 472 250 117 65 chr12 8511594 8511748 -112745782 + RSINE1 SINE B4 4 165 0 2 649 655 248 0 0 chr12 8511782 8511911 -112745619 + B3 SINE B2 2 130 -86 2 649 451 246 38 15 chr12 8512078 8512210 -112745320 + Charlie5 DNA MER1_type 2270 2404 -220 2 649 990 124 0 0 chr12 8512366 8512503 -112745027 - B2_Mm2 SINE B2 -58 137 1 2 649 963 177 98 10 chr12 8512783 8512977 -112744553 - B3 SINE B2 -5 211 1 2 649 366 42 0 0 chr12 8512981 8513029 -112744501 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 649 711 90 0 0 chr12 8513029 8513128 -112744402 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 2 649 292 234 173 49 chr12 8513194 8513275 -112744255 - ID_B1 SINE B4 -131 93 3 2 649 271 246 52 90 chr12 8513258 8513276 -112744254 - MT2B2 LTR ERVL -304 280 216 3 649 474 232 0 20 chr12 8513276 8513377 -112744153 - PB1D10 SINE Alu -12 105 7 3 649 271 246 52 90 chr12 8513377 8513392 -112744138 - MT2B2 LTR ERVL -304 215 152 3 649 396 315 71 27 chr12 8513489 8513672 -112743858 + LTR48B LTR ERV1 434 624 -20 3 649 564 56 0 0 chr12 8513679 8513751 -112743779 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 3 649 180 0 0 0 chr12 8514060 8514080 -112743450 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 3 649 21 71 0 0 chr12 8514658 8514700 -112742830 + AT_rich Low_complexity Low_complexity 1 42 0 3 649 807 87 9 0 chr12 8514709 8514824 -112742706 - B1_Mur4 SINE Alu -1 149 34 3 649 2972 152 4 66 chr12 8515176 8515734 -112741796 + RLTR28 LTR ERVL 2 524 0 3 649 1093 52 15 0 chr12 8515765 8515899 -112741631 + B1_Mus1 SINE Alu 1 136 -12 3 649 35 18 0 35 chr12 8516013 8516034 -112741496 + AT_rich Low_complexity Low_complexity 1 21 0 3 649 1149 88 0 0 chr12 8516034 8516181 -112741349 - B1_Mus1 SINE Alu 0 148 2 4 649 35 18 0 35 chr12 8516181 8516216 -112741314 + AT_rich Low_complexity Low_complexity 1 34 0 4 649 604 136 82 10 chr12 8516225 8516427 -112741103 - Lx9 LINE L1 -18 7626 7388 4 649 521 275 0 7 chr12 8517043 8517182 -112740348 + B1_Mur1 SINE Alu 12 149 0 4 649 894 319 88 71 chr12 8517612 8518091 -112739439 + MLT1H2 LTR MaLR 3 489 0 4 649 366 314 78 102 chr12 8518284 8518591 -112738939 - MER68 LTR ERVL -10 597 245 4 649 644 316 132 31 chr12 8518581 8518898 -112738632 + MLT2C2 LTR ERVL 25 373 -91 4 649 387 41 0 0 chr12 8518919 8518968 -112738562 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 649 537 267 39 39 chr12 8519218 8519374 -112738156 + MER5A1 DNA MER1_type 11 166 0 4 649 552 252 23 30 chr12 8519415 8519546 -112737984 + B1F2 SINE Alu 9 138 -11 4 650 666 68 0 0 chr12 8519842 8519930 -112737600 + (TTTC)n Simple_repeat Simple_repeat 3 90 0 5 650 306 0 0 0 chr12 8519938 8519972 -112737558 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 5 650 921 146 0 21 chr12 8519972 8520112 -112737418 - B1_Mur3 SINE Alu -12 137 1 5 650 786 11 0 0 chr12 8520756 8520847 -112736683 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 5 650 1565 40 0 0 chr12 8520862 8521039 -112736491 - B2_Mm1a SINE B2 -16 177 1 5 650 339 308 96 92 chr12 8521208 8521458 -112736072 - MLT1H LTR MaLR -249 300 50 5 650 918 139 38 0 chr12 8521724 8521882 -112735648 + ORR1D1 LTR MaLR 1 164 -210 5 650 240 35 0 0 chr12 8521884 8521913 -112735617 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 650 210 192 0 0 chr12 8521914 8521966 -112735564 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 5 650 763 251 70 4 chr12 8521991 8522219 -112735311 - L1MA4 LINE L1 -365 5935 5693 5 650 233 128 51 0 chr12 8522248 8522287 -112735243 + PB1D7 SINE Alu 9 49 -71 6 650 615 94 135 0 chr12 8522285 8522381 -112735149 - B2_Mm2 SINE B2 -86 109 1 6 650 1436 38 11 5 chr12 8522401 8522588 -112734942 - L1_Mus3 LINE L1 0 6638 6451 6 650 1172 88 0 0 chr12 8522659 8522806 -112734724 + B1_Mus2 SINE Alu 1 147 0 6 650 2309 138 28 30 chr12 8522923 8523226 -112734304 - ORR1B1 LTR MaLR 0 394 93 6 650 1219 84 84 0 chr12 8523226 8523405 -112734125 - B2_Mm2 SINE B2 -1 194 1 6 650 2309 138 28 30 chr12 8523405 8523496 -112734034 - ORR1B1 LTR MaLR -302 92 2 6 650 180 397 45 77 chr12 8523646 8523794 -112733736 - L2c LINE L2 -9 3366 3221 6 650 210 37 0 0 chr12 8523794 8523821 -112733709 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 650 249 333 51 51 chr12 8523821 8524008 -112733522 - L2c LINE L2 -155 3220 3042 6 650 2309 137 35 27 chr12 8524250 8524655 -112732875 - MTC LTR MaLR -2 419 12 6 650 536 338 26 109 chr12 8524676 8524740 -112732790 + MLT1B LTR MaLR 114 175 -215 6 650 803 200 200 0 chr12 8524740 8524920 -112732610 + B3 SINE B2 1 216 0 7 650 536 338 26 109 chr12 8524920 8525157 -112732373 + MLT1B LTR MaLR 176 390 0 6 650 1089 50 0 21 chr12 8525510 8525653 -112731877 + B1_Mus1 SINE Alu 9 148 0 7 650 248 289 152 32 chr12 8526568 8526693 -112730837 - ORR1E LTR MaLR -4 375 236 7 650 353 323 106 35 chr12 8526801 8527000 -112730530 - ORR1E LTR MaLR -121 238 26 7 650 292 176 40 0 chr12 8527068 8527142 -112730388 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 7 650 315 175 19 43 chr12 8527143 8527304 -112730226 + (TCTCTG)n Simple_repeat Simple_repeat 2 158 0 7 650 804 245 18 0 chr12 8527703 8527866 -112729664 + Lx8 LINE L1 7162 7327 -146 7 650 669 213 30 72 chr12 8527901 8528068 -112729462 + MTE2b LTR MaLR 168 327 -52 7 650 1512 125 248 9 chr12 8528959 8529133 -112728397 + RMER17C LTR ERVK 1 183 -227 7 650 405 0 0 0 chr12 8529133 8529178 -112728352 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 650 1512 125 248 9 chr12 8529178 8529334 -112728196 + RMER17C LTR ERVK 184 409 -1 7 650 720 245 73 129 chr12 8529420 8529619 -112727911 - RMER10A LTR ERVL -25 417 223 7 650 324 0 0 0 chr12 8529619 8529655 -112727875 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 650 720 245 73 129 chr12 8529655 8529895 -112727635 - RMER10A LTR ERVL -220 222 3 7 650 2967 45 4 159 chr12 8529915 8530386 -112727144 + MTB LTR MaLR 3 400 0 8 650 284 321 297 10 chr12 8530989 8531184 -112726346 + MIR SINE MIR 12 262 0 8 650 920 300 91 41 chr12 8531495 8532003 -112725527 - MT2A LTR ERVL 0 533 1 8 650 197 387 0 19 chr12 8532017 8532125 -112725405 - L2b LINE L2 -199 3176 3071 8 650 222 118 0 0 chr12 8532223 8532257 -112725273 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 8 650 1393 253 7 0 chr12 8532336 8532625 -112724905 - RMER1B Other Other -775 291 1 8 650 486 0 0 0 chr12 8533048 8533102 -112724428 + (TTTTG)n Simple_repeat Simple_repeat 1 54 0 8 650 1116 52 15 0 chr12 8533102 8533236 -112724294 - B1_Mus2 SINE Alu -11 136 1 8 650 291 250 0 0 chr12 8533280 8533336 -112724194 - ID SINE ID -143 81 26 8 650 251 266 75 12 chr12 8533998 8534078 -112723452 - RLTR19C LTR ERVK -409 97 13 9 650 642 257 41 36 chr12 8534202 8534396 -112723134 - MER21B LTR ERV1 -204 659 465 9 650 617 193 25 8 chr12 8534400 8534520 -112723010 + ID_B1 SINE B4 1 122 -102 9 650 1577 199 53 39 chr12 8534600 8534960 -112722570 + ORR1D2 LTR MaLR 2 366 -4 9 650 390 204 0 0 chr12 8535513 8535601 -112721929 + GA-rich Low_complexity Low_complexity 3 90 0 9 650 1287 119 108 5 chr12 8536760 8536963 -112720567 + URR1A DNA MER1_type 3 226 0 9 650 984 220 35 0 chr12 8537205 8537405 -112720125 + B3 SINE B2 4 210 -6 9 650 329 81 30 126 chr12 8537601 8537799 -112719731 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 9 650 242 225 49 16 chr12 8537752 8537874 -112719656 + (TTATA)n Simple_repeat Simple_repeat 5 130 0 9 650 28 0 0 0 chr12 8537942 8537970 -112719560 + AT_rich Low_complexity Low_complexity 1 28 0 9 650 852 263 11 0 chr12 8538164 8538354 -112719176 + B4 SINE B4 1 192 -100 1 650 426 259 0 0 chr12 8538378 8538459 -112719071 + B1F2 SINE Alu 54 134 -15 1 650 2499 147 31 38 chr12 8538460 8538642 -112718888 + MTC LTR MaLR 1 188 -233 1 650 3941 146 66 16 chr12 8538642 8538968 -112718562 - RMER6D LTR ERVK -4 716 366 1 650 335 0 67 0 chr12 8538968 8539013 -112718517 + (CACAC)n Simple_repeat Simple_repeat 4 51 0 1 650 3941 146 66 16 chr12 8539013 8539368 -112718162 - RMER6D LTR ERVK -355 365 1 1 650 2499 147 31 38 chr12 8539368 8539609 -112717921 + MTC LTR MaLR 189 421 0 1 650 281 266 47 71 chr12 8539613 8539698 -112717832 + B4 SINE B4 210 292 0 1 650 192 125 0 0 chr12 8539698 8539730 -112717800 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 650 372 292 52 0 chr12 8540155 8540251 -112717279 + LTR84b LTR ERVL 311 411 -350 1 650 309 26 0 0 chr12 8540484 8540522 -112717008 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 650 523 126 10 10 chr12 8540522 8540618 -112716912 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 1 650 469 305 89 58 chr12 8540618 8540967 -112716563 + MTEa LTR MaLR 5 367 -12 1 650 321 47 0 0 chr12 8540969 8541012 -112716518 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 650 237 163 0 0 chr12 8541098 8541147 -112716383 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 1 650 265 351 54 0 chr12 8541479 8541590 -112715940 + MLT1I LTR MaLR 27 143 -268 1 650 422 333 67 0 chr12 8544023 8544173 -112713357 + MER58A DNA MER1_type 54 213 -11 1 650 538 254 76 15 chr12 8544432 8544564 -112712966 + ID_B1 SINE B4 83 222 -2 1 650 638 75 0 11 chr12 8544609 8544703 -112712827 + (TCTCCC)n Simple_repeat Simple_repeat 5 97 0 1 650 224 302 8 25 chr12 8544707 8544826 -112712704 + CT-rich Low_complexity Low_complexity 1 117 0 1 650 260 254 127 0 chr12 8546618 8546681 -112710849 + ID4_ SINE ID 9 79 -4 1 650 248 214 0 28 chr12 8546684 8546756 -112710774 + GA-rich Low_complexity Low_complexity 3 72 0 1 650 216 226 0 0 chr12 8547442 8547504 -112710026 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 1 650 22 0 0 0 chr12 8547504 8547526 -112710004 + AT_rich Low_complexity Low_complexity 1 22 0 1 650 2485 73 28 0 chr12 8547797 8548114 -112709416 - ORR1A2 LTR MaLR -1 326 1 1 650 1130 233 106 26 chr12 8548171 8548572 -112708958 - MT2A LTR ERVL -61 540 3 1 650 313 250 122 28 chr12 8549692 8549799 -112707731 - PB1D7 SINE Alu -2 118 2 1 650 394 284 98 38 chr12 8549799 8549982 -112707548 + L1MB5 LINE L1 5701 5894 -280 1 650 836 246 82 0 chr12 8549982 8550189 -112707341 + ID_B1 SINE B4 1 224 0 1 650 228 86 0 0 chr12 8550492 8550527 -112707003 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 650 23 54 0 0 chr12 8550558 8550595 -112706935 + AT_rich Low_complexity Low_complexity 1 37 0 1 650 859 256 50 0 chr12 8550608 8550807 -112706723 + B3 SINE B2 2 210 -6 1 650 489 288 106 0 chr12 8550827 8550959 -112706571 + RSINE1 SINE B4 3 148 -17 1 650 534 182 430 7 chr12 8551003 8551152 -112706378 + B3 SINE B2 1 212 -4 1 650 530 293 91 30 chr12 8551225 8551422 -112706108 + ID_B1 SINE B4 4 212 -12 1 650 1391 87 16 0 chr12 8551584 8551767 -112705763 - B2_Mm2 SINE B2 -9 186 1 1 650 289 261 11 11 chr12 8553111 8553204 -112704326 + CT-rich Low_complexity Low_complexity 2 94 0 1 650 228 256 173 37 chr12 8553262 8553343 -112704187 + RMER10A LTR ERVL 322 413 -29 1 650 607 270 133 11 chr12 8553660 8553840 -112703690 + ID_B1 SINE B4 8 209 -15 1 650 491 176 65 47 chr12 8553857 8553964 -112703566 + B1_Mur4 SINE Alu 41 149 -1 1 650 1179 164 32 23 chr12 8554760 8554979 -112702551 + URR1A DNA MER1_type 1 221 -5 1 650 230 381 101 34 chr12 8555131 8555310 -112702220 + LTR16A LTR ERVL 1 191 -260 1 650 294 73 0 0 chr12 8555342 8555383 -112702147 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 650 1059 123 0 0 chr12 8555486 8555632 -112701898 - B1_Mus1 SINE Alu -1 147 2 1 650 342 0 0 0 chr12 8555845 8555883 -112701647 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 650 338 238 112 0 chr12 8555923 8556003 -112701527 + PB1D10 SINE Alu 21 109 -8 1 650 531 90 0 0 chr12 8556011 8556089 -112701441 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 650 1306 102 17 0 chr12 8556951 8557128 -112700402 - B2_Mm2 SINE B2 -14 181 2 1 650 626 192 0 8 chr12 8557366 8557492 -112700038 - B1_Mur1 SINE Alu -1 148 24 1 650 414 0 0 0 chr12 8557789 8557835 -112699695 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 1 650 1098 73 0 0 chr12 8557835 8557971 -112699559 - B1_Mus1 SINE Alu -12 136 1 1 650 285 270 115 39 chr12 8558374 8558478 -112699052 - PB1D10 SINE Alu -1 116 5 1 650 225 0 0 0 chr12 8558501 8558526 -112699004 + (TTG)n Simple_repeat Simple_repeat 1 25 0 1 650 323 314 19 0 chr12 8559291 8559396 -112698134 + ID_B1 SINE B4 115 221 -3 1 650 687 129 48 16 chr12 8559545 8559671 -112697859 + B1_Mur4 SINE Alu 1 130 -20 1 650 207 0 0 0 chr12 8559675 8559698 -112697832 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 650 315 0 0 0 chr12 8559698 8559732 -112697798 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 650 387 0 0 0 chr12 8559808 8559851 -112697679 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 650 1119 90 0 0 chr12 8559852 8560008 -112697522 - B2_Mm2 SINE B2 -37 158 3 1 650 246 62 0 0 chr12 8560025 8560057 -112697473 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 650 1013 190 45 5 chr12 8560905 8561106 -112696424 - B3 SINE B2 -6 210 2 1 650 24 0 0 0 chr12 8561118 8561142 -112696388 + AT_rich Low_complexity Low_complexity 1 24 0 1 650 425 310 27 14 chr12 8561165 8561312 -112696218 - B1F2 SINE Alu 0 149 1 1 650 547 79 11 22 chr12 8561319 8561410 -112696120 + (TTTC)n Simple_repeat Simple_repeat 1 90 0 1 650 684 215 23 0 chr12 8561410 8561540 -112695990 - B1_Mur1 SINE Alu -5 144 12 1 650 486 0 0 0 chr12 8561547 8561601 -112695929 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 650 369 0 0 0 chr12 8561601 8561641 -112695889 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 650 1227 41 0 7 chr12 8561821 8561968 -112695562 + B1_Mm SINE Alu 2 147 0 1 650 381 22 0 0 chr12 8561985 8562031 -112695499 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 650 254 192 58 0 chr12 8562986 8563038 -112694492 + ID SINE ID 3 57 -167 1 650 367 278 54 34 chr12 8563358 8563507 -112694023 + RSINE1 SINE B4 9 160 -5 1 650 756 184 0 6 chr12 8563543 8563907 -112693623 + (CA)n Simple_repeat Simple_repeat 1 361 0 1 650 35 41 0 0 chr12 8563914 8563963 -112693567 + AT_rich Low_complexity Low_complexity 1 49 0 1 650 1280 104 0 30 chr12 8564015 8564213 -112693317 + B2_Mm2 SINE B2 1 192 -3 1 650 504 0 0 0 chr12 8564268 8564324 -112693206 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 650 315 272 21 21 chr12 8564403 8564497 -112693033 + B4A SINE B4 125 218 -74 1 650 227 281 0 0 chr12 8564528 8564585 -112692945 + (CATA)n Simple_repeat Simple_repeat 3 59 0 1 650 200 139 0 27 chr12 8564571 8564608 -112692922 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 650 255 245 42 21 chr12 8564638 8564734 -112692796 + PB1D9 SINE Alu 2 99 -21 1 650 415 286 36 0 chr12 8564689 8564801 -112692729 + RSINE1 SINE B4 45 160 -5 1 650 278 47 0 44 chr12 8565009 8565054 -112692476 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 1 650 234 0 0 0 chr12 8565054 8565080 -112692450 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 650 366 203 12 48 chr12 8565284 8565367 -112692163 - B3A SINE B2 -36 162 83 1 650 494 184 0 17 chr12 8565395 8565511 -112692019 + GA-rich Low_complexity Low_complexity 2 115 0 1 650 462 310 32 0 chr12 8565822 8565977 -112691553 - B4A SINE B4 -132 160 1 1 650 633 188 329 0 chr12 8565982 8566152 -112691378 + URR1A DNA MER1_type 1 226 0 1 650 211 322 80 43 chr12 8566421 8566583 -112690947 + MIRb SINE MIR 86 253 -15 1 650 207 0 0 0 chr12 8567605 8567628 -112689902 + (CAGC)n Simple_repeat Simple_repeat 2 24 0 1 650 320 281 151 6 chr12 8569299 8569471 -112688059 + MIR SINE MIR 16 212 -50 1 650 789 206 46 47 chr12 8569881 8570143 -112687387 + RMER19B LTR ERVK 1 221 -681 1 650 2607 163 71 10 chr12 8570162 8570682 -112686848 + RMER19B LTR ERVK 349 900 -2 1 650 2355 160 118 11 chr12 8570892 8571348 -112686182 + RLTR16 LTR ERVK 1 505 0 1 650 1348 136 64 0 chr12 8571795 8572060 -112685470 + L1_Mur3 LINE L1 3087 3368 -2512 1 650 1371 62 0 0 chr12 8572060 8572238 -112685292 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 650 1115 89 6 0 chr12 8572238 8572395 -112685135 - B2_Mm1a SINE B2 -33 160 3 1 650 2667 140 68 20 chr12 8572397 8572938 -112684592 + L1_Mur3 LINE L1 3365 3931 -1949 1 650 2199 286 30 11 chr12 8572980 8573546 -112683984 + Lx5 LINE L1 6455 7031 -19 1 650 305 346 232 78 chr12 8573814 8574097 -112683433 + MLT1A0 LTR MaLR 1 322 -52 1 650 2653 63 0 28 chr12 8574097 8574458 -112683072 - L1Md_F2 LINE L1 0 6582 6232 1 650 244 318 0 147 chr12 8574458 8574509 -112683021 + MLT1A0 LTR MaLR 323 371 -3 1 650 313 284 71 47 chr12 8575169 8575339 -112682191 + L1MEg LINE L1 650 823 -5261 1 650 1087 51 0 0 chr12 8575362 8575500 -112682030 + L1_Mus1 LINE L1 6430 6567 0 1 650 324 120 0 0 chr12 8575513 8575563 -112681967 + (A)n Simple_repeat Simple_repeat 1 50 0 1 650 333 284 116 20 chr12 8575582 8575780 -112681750 + L1MEg LINE L1 867 1083 -5001 1 650 3366 259 55 15 chr12 8575779 8576658 -112680872 + Lx7 LINE L1 6393 7306 -390 1 650 387 0 0 0 chr12 8576658 8576701 -112680829 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 650 183 42 0 0 chr12 8576703 8576727 -112680803 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 650 283 236 26 60 chr12 8576825 8576942 -112680588 + Lx7 LINE L1 7579 7691 -5 1 650 338 265 112 68 chr12 8576981 8577328 -112680202 + MLT1A1 LTR MaLR 13 406 -2 2 650 349 252 18 9 chr12 8577328 8577440 -112680090 + L1MEg LINE L1 1103 1215 -4869 1 650 497 16 16 0 chr12 8577443 8577505 -112680025 + (GTTTG)n Simple_repeat Simple_repeat 1 63 0 2 650 345 340 45 31 chr12 8577625 8577847 -112679683 + L1M4c LINE L1 148 372 -6170 2 650 420 20 0 0 chr12 8577866 8577915 -112679615 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2 650 573 197 33 0 chr12 8578090 8578212 -112679318 + B1_Mus1 SINE Alu 23 148 0 2 650 432 284 142 21 chr12 8578331 8578619 -112678911 + L1M4c LINE L1 1534 1856 -4790 2 650 733 224 161 64 chr12 8578717 8579090 -112678440 + RLTR9E LTR ERVK 1 409 0 2 650 1763 146 24 36 chr12 8579091 8579426 -112678104 + ETnERV2-int LTR ERVK 2 332 -2982 2 650 5724 122 11 31 chr12 8579404 8580261 -112677269 + ETnERV2-int LTR ERVK 829 1667 -1647 2 650 10588 213 25 18 chr12 8580492 8583326 -112674204 + ETnERV2-int LTR ERVK 1790 5427 -1979 2 650 770 238 10 21 chr12 8583341 8583534 -112673996 + RLTR1D LTR ERV1 52 242 -363 2 650 1118 142 48 89 chr12 8583541 8583789 -112673741 + RLTR1D LTR ERV1 183 420 -185 2 650 39034 37 0 0 chr12 8583796 8589647 -112667883 - L1Md_T LINE L1 -12 6573 626 2 650 3528 107 36 64 chr12 8589647 8590304 -112667226 + RLTR6_Mm LTR ERV1 1 639 -15 2 650 6649 25 46 17 chr12 8590305 8591111 -112666419 + RLTR6-int LTR ERV1 1 829 -6949 2 650 428 287 0 59 chr12 8591105 8591257 -112666273 + MMVL30-int LTR ERV1 391 533 -7023 2 650 8729 39 68 14 chr12 8591605 8594382 -112663148 + MMVL30-int LTR ERV1 772 3698 0 2 650 3357 111 38 66 chr12 8594382 8595019 -112662511 + RLTR6_Mm LTR ERV1 1 619 -35 2 650 2859 109 0 37 chr12 8595019 8595477 -112662053 - L1Md_Gf LINE L1 -5893 629 189 2 650 576 226 44 25 chr12 8595477 8595681 -112661849 + RLTR1B LTR ERV1 292 499 -13 2 650 5531 123 27 10 chr12 8595697 8596744 -112660786 + ETnERV2-int LTR ERVK 5423 6227 -1179 2 650 591 291 13 0 chr12 8597037 8597188 -112660342 - ETnERV2-int LTR ERVK -760 6646 6494 2 650 289 336 0 0 chr12 8597284 8597391 -112660139 - RNERVK23-int LTR ERVK -456 7761 7655 2 650 277 278 22 22 chr12 8597496 8597588 -112659942 - RNERVK23-int LTR ERVK -704 7513 7422 2 650 1201 62 0 0 chr12 8597613 8597759 -112659771 - B1_Mus2 SINE Alu 0 147 2 2 650 3800 321 60 43 chr12 8599126 8602112 -112655418 - RNERVK23-int LTR ERVK -2486 5731 2696 2 650 384 328 62 52 chr12 8602235 8602689 -112654841 - RNERVK23-int LTR ERVK -5314 2366 1704 2 650 258 125 25 0 chr12 8602782 8602822 -112654708 - RNERVK23-int LTR ERVK -4527 1640 1600 2 650 281 28 0 0 chr12 8603493 8603529 -112654001 - ORR1A1 LTR MaLR 0 326 291 2 650 2695 146 90 12 chr12 8603538 8604051 -112653479 + RLTR1D LTR ERV1 37 589 -16 2 650 2353 48 3 3 chr12 8604067 8604381 -112653149 - ORR1A1 LTR MaLR -32 314 1 2 650 2901 169 59 54 chr12 8605689 8606314 -112651216 - RLTR5_Mm LTR ERV1 0 628 1 2 650 931 260 81 45 chr12 8607198 8607556 -112649974 - MTE2a LTR MaLR -8 371 1 2 650 1650 269 141 47 chr12 8607556 8608955 -112648575 + L1M4 LINE L1 2356 3885 -2261 2 650 614 273 41 10 chr12 8609995 8610191 -112647339 - MLT1B LTR MaLR -2 388 187 2 650 280 216 33 75 chr12 8610271 8610391 -112647139 - MLT1B LTR MaLR -208 182 68 2 650 746 279 67 75 chr12 8610456 8610816 -112646714 - ORR1E LTR MaLR -2 357 1 2 650 397 332 72 58 chr12 8610936 8611364 -112646166 - L2 LINE L2 -1742 1677 1244 2 650 695 255 0 7 chr12 8611489 8611635 -112645895 + RSINE1 SINE B4 21 165 0 2 650 663 304 37 14 chr12 8611685 8611902 -112645628 + B4 SINE B4 2 223 -69 2 650 3102 281 107 48 chr12 8611903 8612193 -112645337 + Lx8 LINE L1 5867 6171 -1302 2 650 357 43 0 0 chr12 8612193 8612240 -112645290 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 650 3102 281 107 48 chr12 8612240 8613466 -112644064 + Lx8 LINE L1 6172 7473 0 2 650 247 191 128 0 chr12 8613475 8613522 -112644008 + B4A SINE B4 222 274 -18 2 650 378 0 0 0 chr12 8613557 8613599 -112643931 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 650 719 276 75 36 chr12 8613607 8613903 -112643627 + RLTR11A2 LTR ERVK 1 307 -146 2 650 3448 46 82 0 chr12 8616233 8616672 -112640858 + MT2C_Mm LTR ERVL 1 475 0 2 650 39147 25 9 2 chr12 8616672 8618617 -112638913 + MERVL-int LTR ERVL 1 1983 -3502 2 650 4331 160 24 18 chr12 8618617 8619467 -112638063 + RLTR13A LTR ERVK 1 855 0 2 650 39147 51 12 4 chr12 8619467 8622767 -112634763 + MERVL-int LTR ERVL 1978 5336 -378 2 650 352 125 26 53 chr12 8622799 8622875 -112634655 + ORR1A3-int LTR MaLR 567 640 -1323 2 650 302 0 0 0 chr12 8622875 8622913 -112634617 + MERVL-int LTR ERVL 5448 5485 0 2 650 3381 59 77 0 chr12 8622913 8623354 -112634176 + MT2C_Mm LTR ERVL 1 475 0 2 650 181 28 111 0 chr12 8623704 8623740 -112633790 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 650 22 56 0 0 chr12 8624249 8624285 -112633245 + AT_rich Low_complexity Low_complexity 1 36 0 2 650 183 114 0 0 chr12 8624827 8624862 -112632668 + (A)n Simple_repeat Simple_repeat 1 35 0 2 650 474 18 0 0 chr12 8624877 8624932 -112632598 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 2 650 243 0 0 0 chr12 8625314 8625341 -112632189 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 650 279 100 0 0 chr12 8625434 8625458 -112632072 + (A)n Simple_repeat Simple_repeat 1 24 0 2 650 1235 34 0 0 chr12 8625458 8625604 -112631926 + B1_Mm SINE Alu 2 147 0 2 650 279 100 0 0 chr12 8625604 8625629 -112631901 + (A)n Simple_repeat Simple_repeat 1 25 0 2 650 253 276 0 0 chr12 8625894 8626010 -112631520 + A-rich Low_complexity Low_complexity 1 116 0 2 650 1188 50 0 0 chr12 8626356 8626496 -112631034 + B1_Mm SINE Alu 1 140 -7 2 650 307 273 67 73 chr12 8626640 8626790 -112630740 - URR1A DNA MER1_type -73 153 5 2 650 214 327 59 0 chr12 8626835 8626936 -112630594 + B1F SINE Alu 30 136 -13 2 650 249 206 19 58 chr12 8627231 8627334 -112630196 + (TTATA)n Simple_repeat Simple_repeat 1 99 0 2 650 237 237 14 61 chr12 8627287 8627435 -112630095 + (TTA)n Simple_repeat Simple_repeat 3 143 0 2 650 62 26 0 0 chr12 8627469 8627545 -112629985 + AT_rich Low_complexity Low_complexity 1 76 0 2 650 231 139 33 65 chr12 8627712 8627804 -112629726 + (TTA)n Simple_repeat Simple_repeat 1 89 0 2 650 3774 32 5 0 chr12 8627820 8628254 -112629276 - RLTR10C LTR ERVK 0 436 1 2 650 7758 34 0 0 chr12 8628254 8629190 -112628340 - MMERVK10C-int LTR ERVK 0 7581 6646 2 650 40274 37 0 1 chr12 8629176 8634120 -112623410 - MMERVK10C-int LTR ERVK -1771 5810 870 2 650 2513 92 53 3 chr12 8634118 8634498 -112623032 - MMERVK10C-int LTR ERVK -7182 399 1 2 650 3786 30 5 0 chr12 8634498 8634932 -112622598 - RLTR10C LTR ERVK 0 436 1 2 650 38 39 0 0 chr12 8634944 8634996 -112622534 + AT_rich Low_complexity Low_complexity 1 52 0 2 650 3236 51 2 8 chr12 8634999 8635397 -112622133 - MTA_Mm LTR MaLR 0 396 1 2 650 5265 122 28 16 chr12 8635412 8636291 -112621239 - MTA_Mm-int LTR MaLR -364 894 5 2 650 1658 172 47 62 chr12 8636293 8636695 -112620835 - MTA_Mm LTR MaLR 0 396 1 2 650 566 232 6 0 chr12 8636695 8636859 -112620671 + (TA)n Simple_repeat Simple_repeat 1 165 0 2 650 205 0 0 103 chr12 8637854 8637893 -112619637 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 650 299 55 40 81 chr12 8638235 8638334 -112619196 + (CAAA)n Simple_repeat Simple_repeat 2 96 0 2 650 180 0 0 0 chr12 8638893 8638913 -112618617 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 650 23 33 0 0 chr12 8638995 8639025 -112618505 + AT_rich Low_complexity Low_complexity 1 30 0 2 650 24 67 0 0 chr12 8639239 8639284 -112618246 + AT_rich Low_complexity Low_complexity 1 45 0 2 650 302 286 124 34 chr12 8639843 8640020 -112617510 + L1M4b LINE L1 2212 2404 -4930 2 650 249 33 0 0 chr12 8640172 8640202 -112617328 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 650 1082 64 36 0 chr12 8640224 8640364 -112617166 - B1_Mus1 SINE Alu -2 146 2 2 650 195 42 0 0 chr12 8640411 8640435 -112617095 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 650 27 49 0 0 chr12 8640959 8641000 -112616530 + AT_rich Low_complexity Low_complexity 1 41 0 2 650 23 68 0 0 chr12 8641049 8641093 -112616437 + AT_rich Low_complexity Low_complexity 1 44 0 2 650 267 287 0 0 chr12 8641396 8641532 -112615998 + A-rich Low_complexity Low_complexity 1 136 0 2 650 315 0 0 0 chr12 8641600 8641635 -112615895 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 650 284 94 0 19 chr12 8641978 8642032 -112615498 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 2 650 210 37 0 0 chr12 8642041 8642068 -112615462 + (T)n Simple_repeat Simple_repeat 1 27 0 2 650 1039 52 7 0 chr12 8642068 8642203 -112615327 - B1_Mus2 SINE Alu 0 147 12 2 650 210 289 0 0 chr12 8642300 8642383 -112615147 + A-rich Low_complexity Low_complexity 1 83 0 2 650 579 195 11 22 chr12 8642707 8642885 -112614645 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 2 650 562 251 7 0 chr12 8642902 8643181 -112614349 + (TA)n Simple_repeat Simple_repeat 1 281 0 2 650 202 125 42 0 chr12 8643285 8643333 -112614197 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 650 26 30 0 0 chr12 8643333 8643366 -112614164 + AT_rich Low_complexity Low_complexity 1 33 0 2 650 327 204 41 7 chr12 8643384 8643682 -112613848 + (TA)n Simple_repeat Simple_repeat 1 308 0 2 650 333 232 14 27 chr12 8644155 8644301 -112613229 + (TTATA)n Simple_repeat Simple_repeat 2 145 0 2 650 22 35 0 0 chr12 8644346 8644375 -112613155 + AT_rich Low_complexity Low_complexity 1 29 0 2 650 264 59 0 0 chr12 8644450 8644484 -112613046 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2 650 2884 53 11 8 chr12 8644626 8645007 -112612523 - MTA_Mm LTR MaLR -14 382 1 2 650 985 79 179 5 chr12 8645007 8645197 -112612333 - MTA_Mm-int LTR MaLR 0 1098 876 2 650 1070 68 7 20 chr12 8645441 8645591 -112611939 + B1_Mus1 SINE Alu 1 148 0 2 650 273 29 0 0 chr12 8645598 8645632 -112611898 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 650 312 27 0 0 chr12 8645632 8645668 -112611862 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 650 1275 77 16 6 chr12 8645778 8645960 -112611570 + B2_Mm1t SINE B2 2 185 -8 2 650 239 177 62 12 chr12 8645967 8646047 -112611483 + (TAAA)n Simple_repeat Simple_repeat 4 87 0 2 650 267 79 0 0 chr12 8646059 8646097 -112611433 + (A)n Simple_repeat Simple_repeat 1 38 0 2 650 7053 71 14 1 chr12 8646110 8647444 -112610086 + L1_Mus1 LINE L1 5216 6566 -1 2 650 21 0 0 0 chr12 8647444 8647465 -112610065 + AT_rich Low_complexity Low_complexity 1 21 0 2 650 189 132 0 0 chr12 8647478 8647516 -112610014 + (A)n Simple_repeat Simple_repeat 1 38 0 2 650 21 0 0 0 chr12 8647977 8647998 -112609532 + GC_rich Low_complexity Low_complexity 1 21 0 2 650 319 238 45 76 chr12 8648054 8648082 -112609448 - ID_B1 SINE B4 -13 211 84 2 650 536 122 10 58 chr12 8648082 8648186 -112609344 - B1_Mus1 SINE Alu -47 101 3 2 650 365 299 47 0 chr12 8648883 8648990 -112608540 + MER44D DNA MER2_type 2 113 -592 2 650 381 239 50 36 chr12 8648983 8649122 -112608408 + MER44D DNA MER2_type 514 654 -51 2 650 207 0 0 0 chr12 8649410 8649433 -112608097 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 650 536 298 16 22 chr12 8649458 8649640 -112607890 - B3A SINE B2 -15 183 3 2 650 252 0 0 0 chr12 8649655 8649683 -112607847 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 650 814 273 20 10 chr12 8650436 8650632 -112606898 - B4A SINE B4 -77 215 18 2 650 425 50 17 0 chr12 8650635 8650695 -112606835 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 81 409 300 35 112 chr12 8650701 8650870 -112606660 - B3A SINE B2 -42 156 1 3 651 1109 269 26 4 chr12 8651536 8651808 -112605722 + B4A SINE B4 9 286 -6 3 651 531 183 82 107 chr12 8652733 8652892 -112604638 + RSINE1 SINE B4 11 165 0 3 651 207 0 0 0 chr12 8652892 8652915 -112604615 + (CCA)n Simple_repeat Simple_repeat 1 23 0 3 651 483 283 13 26 chr12 8653301 8653457 -112604073 - Lx8 LINE L1 -263 7210 7057 3 651 1583 254 88 14 chr12 8653455 8653946 -112603584 - Lx8 LINE L1 -633 6840 6314 3 651 540 0 0 0 chr12 8655447 8655507 -112602023 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 651 509 250 43 14 chr12 8655682 8655820 -112601710 - B1F SINE Alu -3 146 5 3 651 462 307 14 21 chr12 8655693 8655836 -112601694 - ID_B1 SINE B4 -13 211 70 3 651 288 306 46 61 chr12 8656079 8656226 -112601304 + MIRc SINE MIR 1 146 -122 3 651 597 250 7 7 chr12 8656590 8656727 -112600803 + B1_Mur3 SINE Alu 1 137 -12 3 651 427 106 330 0 chr12 8657226 8657320 -112600210 - URR1B DNA MER1_type 0 225 101 3 651 578 223 0 26 chr12 8657875 8657990 -112599540 - PB1D9 SINE Alu -2 118 7 3 651 833 76 13 7 chr12 8657987 8658118 -112599412 + B1_Mus2 SINE Alu 14 150 0 3 651 208 135 0 0 chr12 8658118 8658155 -112599375 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 651 458 289 113 37 chr12 8658327 8658426 -112599104 + L1MA4 LINE L1 5710 5814 -486 3 651 216 0 0 0 chr12 8658426 8658450 -112599080 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 651 458 289 113 37 chr12 8658450 8658677 -112598853 + L1MA4 LINE L1 5815 6060 -240 3 651 1475 64 5 0 chr12 8658733 8658920 -112598610 - B2_Mm1t SINE B2 -5 188 1 3 651 1674 21 0 0 chr12 8659331 8659523 -112598007 + B2_Mm1a SINE B2 2 193 0 3 651 458 75 0 15 chr12 8659949 8660017 -112597513 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 651 652 238 23 8 chr12 8660207 8660338 -112597192 + B1F SINE Alu 15 147 -2 3 651 259 263 0 0 chr12 8660553 8660610 -112596920 + Charlie5 DNA MER1_type 31 87 -2537 3 651 1185 100 6 6 chr12 8660803 8660974 -112596556 - B2_Mm2 SINE B2 -24 171 1 3 651 272 350 10 20 chr12 8660988 8661087 -112596443 - RMER15 LTR ERVL -105 470 373 3 651 2052 301 60 46 chr12 8661088 8661585 -112595945 - Lx8 LINE L1 -238 7235 6703 3 651 207 0 0 0 chr12 8661585 8661608 -112595922 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 651 1138 63 0 0 chr12 8661616 8661758 -112595772 - B1_Mus2 SINE Alu -5 142 1 3 651 2052 301 60 46 chr12 8661758 8662137 -112595393 - Lx8 LINE L1 -771 6702 6338 3 651 811 189 40 13 chr12 8662205 8662355 -112595175 + URR1B DNA MER1_type 3 156 -69 3 651 897 89 48 0 chr12 8662355 8662479 -112595051 + B1_Mus1 SINE Alu 2 131 -17 3 651 297 51 0 0 chr12 8662482 8662521 -112595009 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 651 600 246 56 0 chr12 8663344 8663486 -112594044 - RSINE1 SINE B4 -14 151 2 3 651 1995 204 24 12 chr12 8664427 8664843 -112592687 - MTC LTR MaLR 0 421 1 3 651 259 349 155 36 chr12 8666270 8666796 -112590734 - L2b LINE L2 0 3375 2796 3 651 962 246 30 107 chr12 8666798 8666975 -112590555 + L1MA5 LINE L1 5877 6018 -282 3 651 677 224 153 0 chr12 8666975 8667158 -112590372 + B3 SINE B2 1 211 -5 3 651 962 246 30 107 chr12 8667158 8667439 -112590091 + L1MA5 LINE L1 6019 6300 0 3 651 417 331 14 14 chr12 8667542 8667689 -112589841 + RSINE1 SINE B4 4 150 -15 3 651 495 0 0 0 chr12 8667695 8667750 -112589780 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 651 825 191 0 7 chr12 8667785 8667922 -112589608 - B1_Mur2 SINE Alu -5 144 9 3 651 445 187 102 9 chr12 8667927 8668035 -112589495 + B1_Mur2 SINE Alu 32 149 0 3 651 342 235 21 105 chr12 8668125 8668220 -112589310 + ID_B1 SINE B4 90 176 -48 3 651 270 271 38 164 chr12 8668220 8668284 -112589246 + PB1D10 SINE Alu 9 148 0 3 651 1404 267 32 9 chr12 8668998 8669346 -112588184 + ORR1E LTR MaLR 3 358 -1 3 651 387 0 0 0 chr12 8670423 8670466 -112587064 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 651 310 262 12 12 chr12 8670612 8670693 -112586837 + B4 SINE B4 2 82 -210 3 651 870 156 21 7 chr12 8670778 8670920 -112586610 + B1_Mur4 SINE Alu 1 144 -6 3 651 671 240 91 5 chr12 8671107 8671304 -112586226 + ID_B1 SINE B4 3 216 -8 3 651 342 287 109 6 chr12 8671372 8671547 -112585983 + L1MB7 LINE L1 5672 5864 -320 3 651 225 269 59 15 chr12 8671666 8671734 -112585796 + B1F1 SINE Alu 25 95 -54 3 651 1129 43 0 21 chr12 8671786 8671930 -112585600 + B1_Mm SINE Alu 1 141 -6 3 651 378 0 0 0 chr12 8671935 8671977 -112585553 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 651 763 239 44 107 chr12 8672094 8672300 -112585230 + B3 SINE B2 18 210 -6 3 651 1093 97 0 0 chr12 8672349 8672493 -112585037 + B1_Mus1 SINE Alu 3 146 -2 3 651 522 308 83 52 chr12 8672671 8672863 -112584667 + B3 SINE B2 1 198 -18 3 651 309 51 0 0 chr12 8672966 8673005 -112584525 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 651 1230 85 0 17 chr12 8673005 8673184 -112584346 - B2_Mm2 SINE B2 -18 177 2 3 651 1623 81 39 8 chr12 8673187 8673447 -112584083 - L1_Mus3 LINE L1 -1 6637 6370 3 651 369 216 27 0 chr12 8673538 8673612 -112583918 - ID4_ SINE ID -6 77 2 3 651 379 231 0 194 chr12 8673638 8673716 -112583814 - PB1D10 SINE Alu -9 108 42 3 651 1707 21 0 0 chr12 8673716 8673909 -112583621 - B2_Mm1a SINE B2 0 193 1 3 651 379 231 0 194 chr12 8673909 8673964 -112583566 - PB1D10 SINE Alu -76 41 1 3 651 1006 58 57 14 chr12 8673987 8674127 -112583403 - B1_Mus1 SINE Alu -1 147 2 3 651 286 295 77 8 chr12 8674128 8674258 -112583272 - LTR33A LTR ERVL -59 461 323 3 651 486 288 7 7 chr12 8674907 8675047 -112582483 + ID_B1 SINE B4 84 223 -1 3 651 765 170 22 0 chr12 8675086 8675221 -112582309 - B1_Mus1 SINE Alu -10 138 1 3 651 1509 57 0 15 chr12 8675246 8675442 -112582088 - B2_Mm1t SINE B2 0 193 1 3 651 236 262 120 46 chr12 8675488 8675596 -112581934 - B3 SINE B2 -3 213 98 3 651 477 0 0 0 chr12 8675601 8675654 -112581876 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3 651 817 139 8 0 chr12 8675655 8675777 -112581753 - B1_Mus1 SINE Alu -13 135 13 3 651 808 64 9 0 chr12 8675776 8675885 -112581645 + B1_Mus2 SINE Alu 30 139 -8 3 651 207 0 0 0 chr12 8675887 8675910 -112581620 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 651 526 216 31 0 chr12 8675935 8676032 -112581498 - B3 SINE B2 -111 105 6 3 651 608 262 11 11 chr12 8676179 8676353 -112581177 + MER5B DNA MER1_type 4 177 -1 3 651 396 0 0 0 chr12 8676569 8676613 -112580917 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 651 252 0 0 0 chr12 8676613 8676640 -112580890 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 651 622 203 37 8 chr12 8676753 8676887 -112580643 - MER5A1 DNA MER1_type -1 165 28 3 651 369 286 57 0 chr12 8676913 8677018 -112580512 - MamRep605 Unknown Unknown -290 586 476 3 651 449 254 115 0 chr12 8677329 8677459 -112580071 - MER45A DNA Tip100 -33 145 1 3 651 1113 76 0 7 chr12 8677666 8677812 -112579718 - B1_Mus1 SINE Alu -2 146 2 3 651 278 312 78 52 chr12 8678213 8678242 -112579288 - PB1D9 SINE Alu 0 120 94 3 651 2158 92 76 0 chr12 8678242 8678545 -112578985 - ORR1A2 LTR MaLR -1 326 1 3 651 278 312 78 52 chr12 8678545 8678630 -112578900 - PB1D9 SINE Alu -27 93 3 3 651 498 33 0 0 chr12 8678673 8678733 -112578797 + (GGAGA)n Simple_repeat Simple_repeat 2 61 0 3 651 635 305 22 17 chr12 8679328 8679508 -112578022 + B4A SINE B4 7 187 -105 3 651 333 244 35 11 chr12 8679774 8679861 -112577669 + MLT1A1 LTR MaLR 307 395 -13 3 651 243 0 0 0 chr12 8679871 8679898 -112577632 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 651 1231 41 0 0 chr12 8679901 8680047 -112577483 - B1_Mm SINE Alu 0 147 2 3 651 234 333 11 56 chr12 8680097 8680186 -112577344 - L2b LINE L2 -49 3326 3242 3 651 27 49 0 0 chr12 8680899 8680940 -112576590 + GC_rich Low_complexity Low_complexity 1 41 0 3 651 256 176 14 14 chr12 8681109 8681178 -112576352 + GA-rich Low_complexity Low_complexity 1 69 0 3 651 520 183 0 0 chr12 8682857 8682950 -112574580 - RSINE1 SINE B4 -28 137 45 3 651 561 70 116 0 chr12 8683332 8683418 -112574112 + B1_Mus2 SINE Alu 52 147 0 3 651 502 295 97 11 chr12 8684580 8684765 -112572765 - RMER30 DNA MER1_type -1 201 1 3 651 227 324 158 48 chr12 8684997 8685250 -112572280 - RSINE1 SINE B4 -11 281 2 3 651 599 187 163 0 chr12 8685458 8685581 -112571949 + B1_Mus1 SINE Alu 6 148 0 3 651 388 284 94 8 chr12 8685809 8685926 -112571604 - ID_B1 SINE B4 -17 207 81 3 651 260 81 0 0 chr12 8686368 8686405 -112571125 + MT2B2 LTR ERVL 32 68 -516 3 651 294 290 130 0 chr12 8686390 8686490 -112571040 - B1F SINE Alu -34 115 3 3 651 1615 96 22 101 chr12 8686490 8686678 -112570852 - MT2B2 LTR ERVL -418 166 1 3 651 405 342 18 37 chr12 8686713 8686877 -112570653 + RSINE1 SINE B4 3 163 -2 3 651 6565 77 67 1 chr12 8687275 8688438 -112569092 + L1_Mus4 LINE L1 5395 6636 0 3 651 1693 143 157 22 chr12 8688919 8689283 -112568247 + MTC LTR MaLR 1 413 -8 3 651 300 149 70 56 chr12 8689918 8689989 -112567541 - MTEb LTR MaLR -102 277 206 3 651 1110 219 0 19 chr12 8690324 8690533 -112566997 - B3 SINE B2 -10 206 2 3 651 466 312 0 35 chr12 8690929 8691042 -112566488 + B4A SINE B4 10 118 -174 3 651 2948 192 62 38 chr12 8691409 8691662 -112565868 - Lx5 LINE L1 0 7050 6786 4 651 905 93 28 21 chr12 8691662 8691805 -112565725 - B1_Mus1 SINE Alu 0 148 5 4 651 2948 192 62 38 chr12 8691805 8691990 -112565540 - Lx5 LINE L1 -265 6785 6596 4 651 1463 107 149 88 chr12 8691990 8692298 -112565232 + ORR1A2 LTR MaLR 1 327 0 4 651 2948 192 62 38 chr12 8692298 8692552 -112564978 - Lx5 LINE L1 -455 6595 6341 4 651 1448 116 40 0 chr12 8692551 8692802 -112564728 - L1_Mur2 LINE L1 -490 5387 5127 4 651 3975 131 79 163 chr12 8692822 8693217 -112564313 - L1_Mur2 LINE L1 -1533 4344 3930 4 651 1207 34 0 13 chr12 8693217 8693366 -112564164 - B1_Mus2 SINE Alu 0 147 1 4 651 1288 64 37 21 chr12 8693371 8693562 -112563968 - B2_Mm2 SINE B2 0 195 2 4 651 3975 131 79 163 chr12 8693562 8693878 -112563652 - L1_Mur2 LINE L1 -1948 3929 3607 4 651 254 95 24 0 chr12 8693878 8693920 -112563610 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 651 922 108 7 7 chr12 8693927 8694067 -112563463 - B2_Mm2 SINE B2 -55 140 1 4 651 3975 131 79 163 chr12 8694067 8694435 -112563095 - L1_Mur2 LINE L1 -2271 3599 3214 4 651 289 128 269 0 chr12 8694426 8694504 -112563026 - MusHAL1 LINE L1 -745 1967 1869 4 651 421 299 51 73 chr12 8694514 8694651 -112562879 + ID_B1 SINE B4 83 216 -8 4 651 1064 44 81 0 chr12 8695002 8695138 -112562392 + B1_Mus2 SINE Alu 1 147 0 4 651 1217 61 0 0 chr12 8695186 8695334 -112562196 + B1_Mus1 SINE Alu 1 148 0 4 651 2804 68 52 3 chr12 8695363 8695744 -112561786 + MTB LTR MaLR 1 400 0 4 651 4465 68 72 8 chr12 8695829 8696440 -112561090 + L1_Mus1 LINE L1 5918 6567 0 4 651 375 23 0 0 chr12 8696932 8696976 -112560554 + (T)n Simple_repeat Simple_repeat 1 44 0 4 651 1171 41 0 0 chr12 8696976 8697122 -112560408 - B1_Mus2 SINE Alu 0 147 2 4 651 479 287 49 0 chr12 8697122 8697244 -112560286 - B4A SINE B4 -63 229 102 4 651 654 126 138 23 chr12 8697338 8697468 -112560062 - B1_Mus1 SINE Alu 0 148 4 4 651 721 163 0 23 chr12 8697522 8697654 -112559876 - B2_Mm2 SINE B2 -66 129 1 4 651 408 266 45 18 chr12 8698183 8698294 -112559236 - RSINE1 SINE B4 -8 157 44 4 651 324 238 11 45 chr12 8698554 8698642 -112558888 - Kanga2_a DNA Tc2 -722 166 82 4 651 535 245 83 14 chr12 8699241 8699386 -112558144 - RSINE1 SINE B4 -9 156 2 4 651 676 227 42 12 chr12 8699673 8699838 -112557692 - MTE2a LTR MaLR -3 376 207 4 651 297 209 221 0 chr12 8699888 8699974 -112557556 - MTE2a LTR MaLR -269 110 6 4 651 463 269 34 34 chr12 8700067 8700082 -112557448 - CYRA11_Mm Unknown Y-chromosome -282 335 250 4 651 862 97 40 34 chr12 8700082 8700231 -112557299 + URR1A DNA MER1_type 77 226 0 4 651 463 269 34 34 chr12 8700231 8700244 -112557286 - CYRA11_Mm Unknown Y-chromosome -282 249 159 4 651 247 31 0 0 chr12 8700338 8700370 -112557160 - B3A SINE B2 -165 33 2 4 651 369 0 0 0 chr12 8700490 8700531 -112556999 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 4 651 972 75 52 0 chr12 8700541 8700675 -112556855 - B1_Mus1 SINE Alu -5 143 3 4 651 264 91 0 0 chr12 8701125 8701169 -112556361 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 651 1317 68 11 0 chr12 8701175 8701351 -112556179 - B2_Mm2 SINE B2 -16 179 2 4 651 470 160 340 0 chr12 8701633 8701739 -112555791 + B1_Mus1 SINE Alu 1 142 -6 4 651 419 319 90 37 chr12 8702003 8702190 -112555340 - L1MEb LINE L1 -5570 500 301 4 651 180 0 0 0 chr12 8702190 8702210 -112555320 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 651 207 0 0 0 chr12 8702217 8702240 -112555290 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 651 419 319 90 37 chr12 8702240 8702288 -112555242 - L1MEb LINE L1 -5777 293 245 4 651 263 297 79 0 chr12 8702319 8702405 -112555125 - B3A SINE B2 -103 92 1 4 651 218 231 185 0 chr12 8702981 8703046 -112554484 - RSINE1 SINE B4 -37 128 52 4 651 216 67 0 0 chr12 8703793 8703823 -112553707 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 4 651 611 181 188 30 chr12 8703880 8704045 -112553485 + B2_Mm2 SINE B2 2 192 -3 4 651 1136 78 59 37 chr12 8704068 8704255 -112553275 - B2_Mm2 SINE B2 -3 192 2 4 651 696 133 19 0 chr12 8704469 8704574 -112552956 + PB1D9 SINE Alu 2 108 -12 4 651 417 300 0 0 chr12 8706269 8706369 -112551161 + PB1D10 SINE Alu 5 104 -13 4 651 180 0 0 0 chr12 8706523 8706543 -112550987 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 651 26 0 0 0 chr12 8706793 8706819 -112550711 + AT_rich Low_complexity Low_complexity 1 26 0 4 651 1429 43 21 21 chr12 8707319 8707510 -112550020 - B2_Mm2 SINE B2 -3 192 2 4 651 499 250 59 27 chr12 8707938 8708115 -112549415 + B3 SINE B2 6 214 -2 4 651 688 267 20 0 chr12 8708145 8708291 -112549239 + B1_Mur1 SINE Alu 1 149 0 4 651 248 151 49 45 chr12 8708350 8708421 -112549109 + B1_Mm SINE Alu 78 149 0 4 651 1225 84 89 6 chr12 8708551 8708730 -112548800 - B2_Mm2 SINE B2 0 195 2 4 651 983 82 0 82 chr12 8708868 8709027 -112548503 - B1_Mus1 SINE Alu -2 146 1 4 651 27 29 0 0 chr12 8709898 8709932 -112547598 + AT_rich Low_complexity Low_complexity 1 34 0 4 651 1700 16 0 0 chr12 8709934 8710125 -112547405 + B2_Mm1a SINE B2 2 192 -1 4 651 421 237 51 34 chr12 8710366 8710484 -112547046 + B4A SINE B4 5 124 -168 4 651 291 243 40 26 chr12 8710817 8710893 -112546637 - ID4 SINE ID -2 81 5 4 651 652 268 126 11 chr12 8712253 8712427 -112545103 + B3 SINE B2 17 210 -6 4 651 211 161 31 31 chr12 8712549 8712613 -112544917 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 4 651 742 216 0 7 chr12 8712994 8713143 -112544387 - B1_Mus1 SINE Alu 0 148 1 4 651 380 312 119 8 chr12 8713849 8713975 -112543555 + RSINE1 SINE B4 24 163 -2 4 651 755 286 36 5 chr12 8714333 8714526 -112543004 - ID_B1 SINE B4 -25 199 1 4 651 1909 189 74 5 chr12 8714543 8714937 -112542593 + MTC LTR MaLR 1 421 0 4 651 317 311 55 70 chr12 8715746 8715874 -112541656 + RSINE1 SINE B4 4 129 -36 4 651 21 36 0 0 chr12 8715986 8716014 -112541516 + AT_rich Low_complexity Low_complexity 1 28 0 4 651 21 0 0 0 chr12 8716320 8716341 -112541189 + AT_rich Low_complexity Low_complexity 1 21 0 4 651 386 274 133 31 chr12 8716395 8716523 -112541007 - B1F SINE Alu -8 141 1 4 651 467 289 62 72 chr12 8718534 8718743 -112538787 + MT2B LTR ERVL 58 264 -337 4 651 1095 43 0 0 chr12 8718638 8718776 -112538754 + B1_Mm SINE Alu 8 145 -2 4 651 225 65 0 0 chr12 8718776 8718807 -112538723 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 651 728 120 35 30 chr12 8719071 8719211 -112538319 + B2_Mm2 SINE B2 9 159 -57 4 651 180 0 0 0 chr12 8719219 8719239 -112538291 + (CAT)n Simple_repeat Simple_repeat 1 20 0 4 651 333 0 0 0 chr12 8719239 8719275 -112538255 + (TAG)n Simple_repeat Simple_repeat 2 38 0 4 651 536 258 76 38 chr12 8720963 8721120 -112536410 + RSINE1 SINE B4 3 165 0 4 651 232 263 88 29 chr12 8721596 8721698 -112535832 - L1MC4a LINE L1 -50 7832 7725 4 651 291 161 0 0 chr12 8721797 8721853 -112535677 + T-rich Low_complexity Low_complexity 1 56 0 4 651 3257 24 45 0 chr12 8722059 8722438 -112535092 - MTA_Mm LTR MaLR 0 396 1 4 651 221 291 18 0 chr12 8722841 8722896 -112534634 + B4 SINE B4 14 69 -223 4 651 391 335 79 28 chr12 8722922 8723100 -112534430 - B3 SINE B2 -27 189 3 4 651 369 283 65 32 chr12 8723669 8723793 -112533737 - MER58B DNA MER1_type -2 339 212 4 651 460 214 168 17 chr12 8723942 8724061 -112533469 - B1_Mus1 SINE Alu -7 141 5 4 651 216 250 23 0 chr12 8724366 8724410 -112533120 + B1_Mur1 SINE Alu 92 136 -13 4 651 1006 176 6 0 chr12 8724645 8724821 -112532709 + URR1A DNA MER1_type 42 218 -8 4 651 891 90 113 0 chr12 8725323 8725456 -112532074 + B1_Mus1 SINE Alu 1 148 0 4 651 308 217 33 88 chr12 8726892 8726983 -112530547 - HAL1-3A_ME LINE L1 -838 2020 1935 4 651 315 245 200 60 chr12 8727034 8727234 -112530296 - Charlie5 DNA MER1_type -5 2619 2392 4 651 266 0 29 0 chr12 8727325 8727359 -112530171 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 651 239 284 68 80 chr12 8728194 8728282 -112529248 + PB1D7 SINE Alu 33 119 -1 4 651 22 0 0 0 chr12 8728646 8728668 -112528862 + AT_rich Low_complexity Low_complexity 1 22 0 4 651 494 186 177 46 chr12 8728772 8728902 -112528628 + B1_Mus1 SINE Alu 2 148 0 4 651 769 199 15 86 chr12 8728965 8729163 -112528367 - B2_Mm2 SINE B2 -11 184 1 4 651 1277 87 6 0 chr12 8729711 8729884 -112527646 - B2_Mm1a SINE B2 -19 174 1 4 651 190 0 67 0 chr12 8730080 8730110 -112527420 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 4 651 1078 56 0 7 chr12 8730110 8730254 -112527276 - B1_Mus1 SINE Alu 0 148 6 4 651 38 39 0 0 chr12 8730509 8730561 -112526969 + AT_rich Low_complexity Low_complexity 1 52 0 4 651 548 200 114 8 chr12 8731153 8731284 -112526246 + B1_Mus1 SINE Alu 3 147 -1 4 651 201 154 0 0 chr12 8731390 8731429 -112526101 + T-rich Low_complexity Low_complexity 5 43 0 4 651 433 230 75 1 chr12 8731439 8731562 -112525968 - MTE2a LTR MaLR -241 138 1 4 651 481 323 20 44 chr12 8731610 8731814 -112525716 + B3 SINE B2 1 199 -17 4 651 2306 265 77 50 chr12 8732083 8733084 -112524446 - MYSERV-int LTR ERVK -1746 4804 3777 4 651 317 225 0 0 chr12 8733461 8733509 -112524021 - MYSERV6-int LTR ERVK -8836 123 76 4 651 198 0 0 0 chr12 8733509 8733531 -112523999 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 651 317 225 0 0 chr12 8733531 8733553 -112523977 - MYSERV6-int LTR ERVK -8884 75 54 4 651 276 240 127 70 chr12 8733988 8734145 -112523385 - RLTR15 LTR ERVK -16 343 178 4 651 250 266 52 31 chr12 8734150 8734247 -112523283 + RLTR15 LTR ERVK 50 148 -211 4 651 444 289 109 16 chr12 8734312 8734495 -112523035 + MER105 DNA DNA 5 204 0 5 651 24 0 0 0 chr12 8734635 8734659 -112522871 + AT_rich Low_complexity Low_complexity 1 24 0 5 651 397 218 13 0 chr12 8734673 8734751 -112522779 - B1_Mur1 SINE Alu -9 140 62 5 651 350 189 25 0 chr12 8734765 8734852 -112522678 + B1_Mus2 SINE Alu 27 146 -1 5 651 457 268 19 0 chr12 8734914 8735019 -112522511 - B3A SINE B2 -89 106 2 5 651 198 0 0 0 chr12 8735658 8735680 -112521850 + (CAG)n Simple_repeat Simple_repeat 1 22 0 5 651 207 0 0 0 chr12 8735750 8735773 -112521757 + (CAG)n Simple_repeat Simple_repeat 1 23 0 5 651 788 289 14 5 chr12 8736680 8736889 -112520641 + ID_B1 SINE B4 2 212 -12 5 651 1010 156 98 10 chr12 8737142 8737336 -112520194 - B3 SINE B2 -4 212 2 5 651 21 0 0 0 chr12 8738367 8738388 -112519142 + AT_rich Low_complexity Low_complexity 1 21 0 5 651 241 188 0 20 chr12 8740344 8740393 -112517137 + (TATG)n Simple_repeat Simple_repeat 3 50 0 5 651 406 221 144 0 chr12 8741398 8741502 -112516028 + PB1D9 SINE Alu 2 120 0 5 651 435 336 0 0 chr12 8742134 8742247 -112515283 - B1F2 SINE Alu -1 148 36 5 651 229 323 112 20 chr12 8742410 8742508 -112515022 + PB1D10 SINE Alu 6 112 -5 5 651 391 209 80 74 chr12 8743021 8743197 -112514333 - L1MC5 LINE L1 -437 7524 7348 5 651 219 103 0 0 chr12 8744461 8744500 -112513030 + (T)n Simple_repeat Simple_repeat 1 39 0 5 651 395 223 69 35 chr12 8744808 8744924 -112512606 - PB1D9 SINE Alu 0 120 1 5 651 941 294 62 6 chr12 8745017 8745370 -112512160 - MTEa LTR MaLR -4 375 3 5 651 342 0 0 0 chr12 8745974 8746012 -112511518 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 651 1108 90 0 0 chr12 8746012 8746157 -112511373 - B1_Mus1 SINE Alu -3 145 1 5 651 234 338 147 21 chr12 8746487 8746814 -112510716 + L1M5 LINE L1 4610 4977 -1169 5 651 324 248 122 26 chr12 8747622 8747737 -112509793 + PB1D10 SINE Alu 1 121 -26 5 651 719 217 59 11 chr12 8748169 8748355 -112509175 + B3 SINE B2 4 198 -18 5 651 769 200 24 24 chr12 8749489 8749658 -112507872 - URR1A DNA MER1_type -11 215 47 5 651 414 228 0 0 chr12 8750301 8750380 -112507150 - ID4 SINE ID 0 83 5 5 651 255 31 0 0 chr12 8750931 8750963 -112506567 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 651 248 261 21 0 chr12 8750999 8751053 -112506477 + B1F SINE Alu 46 132 -17 5 651 25 0 0 0 chr12 8751577 8751602 -112505928 + AT_rich Low_complexity Low_complexity 1 25 0 5 651 923 23 105 77 chr12 8751855 8751998 -112505532 - B1_Mm SINE Alu 0 147 1 5 651 1584 191 132 13 chr12 8752096 8752468 -112505062 - MTD LTR MaLR 0 419 4 5 651 26 101 0 0 chr12 8752764 8752853 -112504677 + AT_rich Low_complexity Low_complexity 1 89 0 5 651 1209 48 0 7 chr12 8753213 8753361 -112504169 + B1_Mus2 SINE Alu 1 147 0 5 651 285 158 217 109 chr12 8753378 8753470 -112504060 + BC1_Mm scRNA scRNA 1 102 -50 5 651 1559 42 5 5 chr12 8753594 8753787 -112503743 + B2_Mm1a SINE B2 1 193 0 5 651 24 67 0 0 chr12 8753877 8753922 -112503608 + AT_rich Low_complexity Low_complexity 1 45 0 5 651 351 283 94 46 chr12 8754167 8754322 -112503208 + ID_B1 SINE B4 65 221 -71 5 651 253 182 0 0 chr12 8754580 8754624 -112502906 - ID4_ SINE ID -6 77 34 5 651 318 287 102 47 chr12 8754660 8754788 -112502742 + RSINE1 SINE B4 4 138 -27 5 651 201 158 0 0 chr12 8755083 8755121 -112502409 + T-rich Low_complexity Low_complexity 1 38 0 5 651 485 231 185 0 chr12 8756189 8756297 -112501233 + RSINE1 SINE B4 22 149 -16 5 651 248 53 26 0 chr12 8756298 8756336 -112501194 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 651 25 0 0 0 chr12 8757042 8757067 -112500463 + AT_rich Low_complexity Low_complexity 1 25 0 5 651 456 104 0 0 chr12 8759410 8759477 -112498053 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 651 636 184 147 31 chr12 8759606 8759769 -112497761 - B2_Mm2 SINE B2 -13 182 1 5 651 537 148 179 17 chr12 8759860 8759977 -112497553 - B1_Mus2 SINE Alu 0 147 12 5 651 484 281 155 13 chr12 8760591 8760746 -112496784 + B3A SINE B2 4 180 -18 5 651 186 43 0 0 chr12 8760948 8760971 -112496559 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 5 651 898 230 112 52 chr12 8761141 8761471 -112496059 - ORR1D2 LTR MaLR -16 354 5 5 651 234 268 119 24 chr12 8761459 8761543 -112495987 - MTE-int LTR MaLR -37 1543 1452 5 651 481 224 148 26 chr12 8762538 8762791 -112494739 - MTD LTR MaLR -14 405 107 5 651 1199 34 0 33 chr12 8762807 8762959 -112494571 + B1_Mm SINE Alu 1 147 0 5 651 381 286 71 9 chr12 8762986 8763084 -112494446 - MTD LTR MaLR -301 120 15 5 651 210 37 0 0 chr12 8763084 8763111 -112494419 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 651 381 286 71 9 chr12 8763111 8763125 -112494405 - MTD LTR MaLR -407 14 1 5 651 266 250 45 11 chr12 8763253 8763342 -112494188 + G-rich Low_complexity Low_complexity 3 94 0 5 651 481 132 0 57 chr12 8764018 8764106 -112493424 - B1_Mus2 SINE Alu -24 123 41 5 651 943 108 14 0 chr12 8764340 8764479 -112493051 - B1_Mur4 SINE Alu -9 141 1 5 651 257 276 48 48 chr12 8764482 8764585 -112492945 - ID_B1 SINE B4 -43 181 79 5 651 837 272 39 81 chr12 8764732 8764992 -112492538 + B4A SINE B4 39 287 -5 5 651 216 0 0 0 chr12 8764994 8765018 -112492512 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 651 711 197 65 14 chr12 8765026 8765165 -112492365 - B3A SINE B2 -47 151 6 5 651 379 286 0 11 chr12 8765370 8765462 -112492068 - PB1D10 SINE Alu -9 108 18 5 651 766 70 282 83 chr12 8765577 8765733 -112491797 + B2_Mm2 SINE B2 1 187 -8 5 651 210 97 0 0 chr12 8765757 8765788 -112491742 + B3A SINE B2 2 32 -166 5 651 532 109 67 29 chr12 8765781 8765885 -112491645 + B2_Mm2 SINE B2 80 187 -8 5 651 180 0 0 0 chr12 8765907 8765927 -112491603 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 651 307 240 213 8 chr12 8766245 8766270 -112491260 - B4 SINE B4 -69 223 123 5 651 382 136 216 0 chr12 8766270 8766358 -112491172 - B1F2 SINE Alu -42 107 1 5 651 336 245 0 31 chr12 8766946 8767043 -112490487 + MLT1A1 LTR MaLR 315 408 0 5 651 185 222 315 22 chr12 8767088 8767180 -112490350 - MIRb SINE MIR -132 136 18 5 651 233 299 0 13 chr12 8768418 8768496 -112489034 + C-rich Low_complexity Low_complexity 5 81 0 5 651 225 108 54 0 chr12 8768696 8768733 -112488797 + MLT1D LTR MaLR 47 85 -420 5 651 269 280 17 0 chr12 8768882 8768952 -112488578 - ID4 SINE ID -60 92 22 5 651 684 93 0 0 chr12 8768960 8769057 -112488473 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 5 651 481 143 0 30 chr12 8769057 8769158 -112488372 + CT-rich Low_complexity Low_complexity 3 100 0 5 651 414 252 20 29 chr12 8769165 8769267 -112488263 - PB1D10 SINE Alu -12 105 5 5 651 494 207 118 65 chr12 8769304 8769490 -112488040 - B3A SINE B2 0 198 3 5 651 255 296 41 50 chr12 8769970 8770091 -112487439 + L2c LINE L2 3242 3361 -26 5 651 362 157 144 11 chr12 8770569 8770659 -112486871 + RLTR15 LTR ERVK 2 103 -256 5 651 773 41 0 0 chr12 8770660 8770758 -112486772 + BC1_Mm scRNA scRNA 2 99 -53 5 651 781 168 0 0 chr12 8771143 8771274 -112486256 + ORR1E LTR MaLR 3 133 -226 5 651 438 238 73 103 chr12 8771292 8771428 -112486102 - RSINE1 SINE B4 -31 134 3 5 651 710 228 46 32 chr12 8771429 8771647 -112485883 + ORR1E LTR MaLR 139 359 0 5 651 717 144 239 43 chr12 8771779 8771967 -112485563 - URR1A DNA MER1_type 0 226 2 5 651 604 305 132 95 chr12 8772219 8772650 -112484880 - MLT1J LTR MaLR -3 509 63 5 651 290 295 36 65 chr12 8772684 8772822 -112484708 - RSINE1 SINE B4 -28 137 4 5 651 617 300 14 0 chr12 8773054 8773194 -112484336 + RSINE1 SINE B4 4 145 -20 5 651 756 295 58 73 chr12 8773729 8774251 -112483279 - MLT2B2 LTR ERVL -1 514 1 5 651 22 80 0 0 chr12 8774251 8774301 -112483229 + AT_rich Low_complexity Low_complexity 1 50 0 5 651 449 239 252 0 chr12 8774434 8774589 -112482941 + ID_B1 SINE B4 31 224 0 5 651 386 242 33 11 chr12 8774597 8774689 -112482841 + PB1D7 SINE Alu 18 111 -9 5 651 799 235 0 0 chr12 8774852 8775001 -112482529 - B1_Mur2 SINE Alu 0 149 1 5 651 210 206 0 56 chr12 8775120 8775153 -112482377 + T-rich Low_complexity Low_complexity 36 68 0 5 651 1547 37 21 0 chr12 8775153 8775342 -112482188 - B2_Mm1t SINE B2 0 193 1 5 651 785 131 273 23 chr12 8775347 8775519 -112482011 - B3 SINE B2 0 216 2 5 651 210 206 0 56 chr12 8775519 8775551 -112481979 + T-rich Low_complexity Low_complexity 2 33 0 5 651 1418 78 5 0 chr12 8775552 8775743 -112481787 - B2_Mm1t SINE B2 -1 192 1 5 651 774 158 7 22 chr12 8775747 8775883 -112481647 - B1_Mus2 SINE Alu 0 147 14 5 651 375 23 0 0 chr12 8776224 8776268 -112481262 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 651 867 204 199 0 chr12 8776284 8776460 -112481070 - B3 SINE B2 -5 211 1 5 651 348 64 0 0 chr12 8777524 8777571 -112479959 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 651 210 71 0 0 chr12 8781348 8781376 -112476154 + (T)n Simple_repeat Simple_repeat 1 28 0 5 651 217 0 61 0 chr12 8781522 8781555 -112475975 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 651 796 168 7 0 chr12 8781555 8781684 -112475846 - B1_Mur4 SINE Alu -9 141 12 6 652 304 292 91 36 chr12 8782371 8782481 -112475049 - PB1D10 SINE Alu -1 116 1 6 652 384 319 104 36 chr12 8782604 8782825 -112474705 + MIRc SINE MIR 19 254 -14 6 652 353 322 76 11 chr12 8786492 8786677 -112470853 + MIRb SINE MIR 22 218 -50 6 652 363 299 148 11 chr12 8787215 8787404 -112470126 + MIR SINE MIR 36 250 -12 6 652 422 216 78 10 chr12 8791631 8791734 -112465796 - RSINE1 SINE B4 -12 153 44 6 652 414 0 0 0 chr12 8792870 8792916 -112464614 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 652 232 326 32 32 chr12 8792935 8793030 -112464500 - RSINE1 SINE B4 -4 161 67 6 652 789 180 308 0 chr12 8794109 8794281 -112463249 + URR1A DNA MER1_type 1 225 -1 6 652 218 29 0 56 chr12 8794828 8794864 -112462666 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 652 306 284 0 37 chr12 8794901 8795009 -112462521 - MIRc SINE MIR -102 160 61 6 652 492 276 47 0 chr12 8795042 8795169 -112462361 - B1F2 SINE Alu -1 148 16 6 652 425 304 21 21 chr12 8801151 8801292 -112456238 + B1F SINE Alu 2 142 -7 6 652 821 157 57 0 chr12 8801312 8801452 -112456078 + B1_Mur4 SINE Alu 3 150 0 6 652 418 270 30 53 chr12 8801477 8801610 -112455920 + RSINE1 SINE B4 7 136 -29 6 652 1003 172 78 0 chr12 8801650 8801830 -112455700 - B2_Mm2 SINE B2 -1 194 1 6 652 2580 247 63 37 chr12 8801881 8802645 -112454885 - Lx7 LINE L1 -403 7293 6510 6 652 545 327 139 22 chr12 8804754 8805213 -112452317 + L1ME2 LINE L1 5649 6161 -3 6 652 216 0 0 0 chr12 8805500 8805524 -112452006 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 6 652 219 69 0 0 chr12 8806412 8806441 -112451089 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 6 652 212 222 167 0 chr12 8806452 8806506 -112451024 + ID4_ SINE ID 8 70 -13 6 652 405 58 0 0 chr12 8807315 8807367 -112450163 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 652 228 318 0 16 chr12 8807431 8807495 -112450035 - B4A SINE B4 -1 291 229 6 652 737 217 0 6 chr12 8807508 8807618 -112449912 + (TG)n Simple_repeat Simple_repeat 1 110 0 6 652 984 156 0 0 chr12 8807618 8807798 -112449732 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 652 737 217 0 6 chr12 8807798 8807868 -112449662 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 652 922 151 0 22 chr12 8807848 8808031 -112449499 + (TATG)n Simple_repeat Simple_repeat 2 180 0 6 652 333 229 0 54 chr12 8808175 8808249 -112449281 - B4 SINE B4 -222 70 1 6 652 27 0 0 0 chr12 8809088 8809115 -112448415 + AT_rich Low_complexity Low_complexity 1 27 0 6 652 302 260 38 25 chr12 8809194 8809273 -112448257 + ID4 SINE ID 3 82 -1 6 652 282 244 33 65 chr12 8809327 8809419 -112448111 + MT2B LTR ERVL 151 239 -362 6 652 456 205 57 6 chr12 8809348 8809464 -112448066 + PB1D9 SINE Alu 8 123 -24 6 652 424 228 22 0 chr12 8810042 8810134 -112447396 + MER63D DNA AcHobo 308 401 -660 6 652 195 170 0 0 chr12 8810812 8810859 -112446671 + CT-rich Low_complexity Low_complexity 1 47 0 6 652 525 16 0 0 chr12 8810859 8810921 -112446609 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 652 773 159 26 40 chr12 8811244 8811395 -112446135 - B1_Mur4 SINE Alu 0 150 2 6 652 3295 142 62 11 chr12 8813531 8814078 -112443452 + RMER15 LTR ERVL 1 575 0 6 652 1034 236 0 36 chr12 8815430 8815650 -112441880 - B3 SINE B2 -1 215 4 6 652 363 317 147 26 chr12 8816667 8816858 -112440672 - RMER15 LTR ERVL -14 561 348 6 652 506 288 82 0 chr12 8816873 8817019 -112440511 - L1_Mur3 LINE L1 -1884 3996 3839 6 652 396 299 103 45 chr12 8818852 8819076 -112438454 + MIR SINE MIR 2 238 -24 6 652 205 209 47 0 chr12 8820049 8820092 -112437438 + (CGTG)n Simple_repeat Simple_repeat 4 48 0 6 652 559 327 150 32 chr12 8821086 8821554 -112435976 - LTR82B Low_complexity ERVL -132 698 176 6 652 800 174 72 7 chr12 8821808 8821947 -112435583 - B1_Mur2 SINE Alu -1 148 1 6 652 309 169 24 12 chr12 8821950 8822034 -112435496 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 652 276 323 112 5 chr12 8822108 8822304 -112435226 - L1MC5 LINE L1 -49 7912 7696 6 652 1217 68 0 0 chr12 8822319 8822466 -112435064 - B1_Mus2 SINE Alu 0 147 1 6 652 719 179 26 73 chr12 8822470 8822621 -112434909 - B1_Mur4 SINE Alu -1 149 6 6 652 354 284 30 77 chr12 8822621 8822638 -112434892 - ID_B1 SINE B4 -1 223 64 6 652 396 314 29 0 chr12 8823848 8823950 -112433580 + RSINE1 SINE B4 4 108 -57 6 652 474 18 0 0 chr12 8823973 8824028 -112433502 + (CATA)n Simple_repeat Simple_repeat 2 56 0 6 652 204 231 0 0 chr12 8824028 8824080 -112433450 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 6 652 234 0 0 0 chr12 8824205 8824231 -112433299 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 652 324 48 0 0 chr12 8824231 8824272 -112433258 + (TATG)n Simple_repeat Simple_repeat 1 42 0 6 652 203 147 0 0 chr12 8824481 8824515 -112433015 + (CCCCCG)n Simple_repeat Simple_repeat 6 39 0 6 652 22 0 0 0 chr12 8824593 8824615 -112432915 + AT_rich Low_complexity Low_complexity 1 22 0 6 652 809 301 28 0 chr12 8825422 8825638 -112431892 - ID_B1 SINE B4 0 224 3 6 652 237 290 108 54 chr12 8826219 8826405 -112431125 + MER63C DNA AcHobo 43 238 -692 6 652 281 303 79 11 chr12 8826387 8826564 -112430966 + MER63C DNA AcHobo 381 569 -361 6 652 1373 82 5 5 chr12 8826609 8826793 -112430737 + B2_Mm2 SINE B2 5 188 -7 6 652 465 19 0 0 chr12 8826947 8827001 -112430529 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 652 1205 61 0 0 chr12 8827399 8827547 -112429983 + B1_Mus1 SINE Alu 1 148 0 6 652 438 36 0 0 chr12 8827750 8827806 -112429724 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 652 250 182 15 15 chr12 8827829 8827896 -112429634 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 6 652 237 306 113 90 chr12 8827898 8828110 -112429420 - B4A SINE B4 0 292 76 6 652 6216 57 2 0 chr12 8828110 8828920 -112428610 + L1_Mm LINE L1 4819 5630 -253 6 652 371 277 43 0 chr12 8828920 8829014 -112428516 - B4 SINE B4 -194 98 1 6 652 435 83 0 0 chr12 8829028 8829088 -112428442 + (T)n Simple_repeat Simple_repeat 1 60 0 6 652 1286 27 0 0 chr12 8829089 8829235 -112428295 - B1_Mus2 SINE Alu 0 147 2 6 652 1116 121 0 0 chr12 8831349 8831522 -112426008 + (TTCC)n Simple_repeat Simple_repeat 3 175 0 6 652 246 246 0 0 chr12 8831523 8831584 -112425946 + T-rich Low_complexity Low_complexity 1 61 0 6 652 560 155 21 0 chr12 8831595 8831692 -112425838 - B1_Mus1 SINE Alu -11 137 39 6 652 272 300 61 24 chr12 8831626 8831708 -112425822 - MT2B LTR ERVL -343 258 174 6 652 474 18 0 0 chr12 8832414 8832469 -112425061 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 652 510 175 131 80 chr12 8832504 8832641 -112424889 + B1_Mus1 SINE Alu 4 147 -1 6 652 1074 268 27 31 chr12 8833029 8833322 -112424208 - B4 SINE B4 0 292 1 6 652 196 250 109 0 chr12 8833855 8833919 -112423611 - L2b LINE L2 -67 3308 3238 6 652 288 0 0 0 chr12 8834345 8834377 -112423153 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 652 243 88 0 0 chr12 8834668 8834702 -112422828 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 6 652 515 29 0 14 chr12 8834944 8835014 -112422516 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 652 986 270 25 17 chr12 8835169 8835406 -112422124 - B4A SINE B4 -53 239 1 6 652 232 348 0 43 chr12 8836003 8836096 -112421434 + ID_B1 SINE B4 69 157 -67 6 652 282 254 40 53 chr12 8836022 8836097 -112421433 + B1F SINE Alu 7 80 -69 6 652 717 256 142 38 chr12 8836378 8836694 -112420836 + L1MB2 LINE L1 5733 6081 -90 6 652 691 224 53 0 chr12 8837066 8837218 -112420312 - RSINE1 SINE B4 -4 161 2 6 652 229 297 83 76 chr12 8837272 8837429 -112420101 - MER113 DNA MER1_type -359 162 5 6 652 287 254 59 103 chr12 8838805 8838941 -112418589 - MER57F LTR ERV1 -50 386 257 6 652 601 180 129 0 chr12 8838971 8839110 -112418420 - MER57F LTR ERV1 -276 160 4 6 652 454 248 141 0 chr12 8839161 8839282 -112418248 + B1F SINE Alu 6 143 -6 6 652 264 238 16 0 chr12 8839293 8839356 -112418174 + GA-rich Low_complexity Low_complexity 2 65 0 6 652 276 77 0 0 chr12 8839708 8839747 -112417783 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 652 722 217 29 7 chr12 8839750 8839889 -112417641 - RSINE1 SINE B4 -12 153 12 6 652 471 261 13 9 chr12 8839893 8840000 -112417530 - PB1 SINE Alu -16 111 2 6 652 362 316 22 0 chr12 8840007 8840143 -112417387 + L1MD2 LINE L1 4713 4851 -1295 6 652 21 36 0 0 chr12 8840228 8840256 -112417274 + AT_rich Low_complexity Low_complexity 1 28 0 6 652 617 235 140 0 chr12 8840256 8840392 -112417138 - RSINE1 SINE B4 -10 155 1 6 652 820 194 0 0 chr12 8840408 8840547 -112416983 - B1_Mur1 SINE Alu 0 149 11 6 652 259 285 82 35 chr12 8840612 8840783 -112416747 + L1MD2 LINE L1 5044 5222 -924 6 652 654 278 178 48 chr12 8840760 8841264 -112416266 + L1MD2 LINE L1 5373 5991 -251 6 652 926 240 40 152 chr12 8841264 8841691 -112415839 - MTE2a LTR MaLR 0 379 1 6 652 329 303 96 101 chr12 8841691 8841897 -112415633 + L1MD2 LINE L1 5991 6187 -172 6 652 352 181 14 27 chr12 8841969 8842043 -112415487 + PB1D10 SINE Alu 43 115 -2 6 652 343 311 134 42 chr12 8842048 8842356 -112415174 + L1MD LINE L1 5290 5638 -546 6 652 694 153 33 0 chr12 8842435 8842680 -112414850 + (CA)n Simple_repeat Simple_repeat 1 253 0 6 652 380 315 144 62 chr12 8842680 8843144 -112414386 + L2a LINE L2 1293 1794 -1625 6 652 208 321 71 54 chr12 8843266 8843378 -112414152 + L2a LINE L2 3306 3419 -7 6 652 222 62 0 0 chr12 8843502 8843534 -112413996 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 6 652 926 199 73 15 chr12 8843552 8843756 -112413774 + B3 SINE B2 1 216 0 6 652 475 286 61 99 chr12 8843892 8844355 -112413175 + L1MB4 LINE L1 5169 5598 -576 7 652 893 234 66 0 chr12 8844355 8844552 -112412978 + B3 SINE B2 2 211 -5 7 652 1543 65 0 0 chr12 8844561 8844747 -112412783 + B2_Mm1a SINE B2 1 186 -7 7 652 475 277 54 135 chr12 8844747 8844948 -112412582 + L1MB4 LINE L1 5599 5800 -380 7 652 399 289 122 57 chr12 8845089 8845327 -112412203 + L1MB4 LINE L1 5871 6130 -50 7 652 1185 68 0 20 chr12 8845327 8845465 -112412065 + B1_Mus1 SINE Alu 2 139 -9 7 652 243 0 0 0 chr12 8845465 8845492 -112412038 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 652 399 289 122 57 chr12 8845502 8845542 -112411988 + L1MB4 LINE L1 6131 6167 -13 7 652 298 308 43 78 chr12 8845547 8845688 -112411842 + MLT1A0 LTR MaLR 1 136 -229 7 652 633 244 39 74 chr12 8845731 8845961 -112411569 + ID_B1 SINE B4 2 223 -1 7 652 284 223 20 61 chr12 8845975 8846123 -112411407 - RMER17D2 LTR ERVK -415 394 253 7 652 1299 161 66 0 chr12 8847235 8847446 -112410084 + URR1B DNA MER1_type 1 225 0 7 652 244 273 150 26 chr12 8847934 8848047 -112409483 + MLT1A0 LTR MaLR 236 362 -3 7 652 366 45 0 0 chr12 8848174 8848224 -112409306 + B1_Mm SINE Alu 60 136 -11 7 652 207 0 0 0 chr12 8848224 8848247 -112409283 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 7 652 508 139 20 10 chr12 8848439 8848541 -112408989 + CT-rich Low_complexity Low_complexity 3 105 0 7 652 699 200 0 0 chr12 8848720 8848835 -112408695 - RSINE1 SINE B4 -47 118 4 7 652 450 222 11 0 chr12 8848840 8848930 -112408600 - B4A SINE B4 -200 92 2 7 652 557 279 156 6 chr12 8849021 8849201 -112408329 - Tigger1 DNA MER2_type 0 2418 2212 7 652 915 287 35 25 chr12 8849203 8849485 -112408045 + B4A SINE B4 8 292 0 7 652 798 41 0 0 chr12 8849486 8849584 -112407946 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 652 351 0 0 0 chr12 8849584 8849622 -112407908 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 652 1944 280 86 21 chr12 8849623 8850251 -112407279 - Tigger1 DNA MER2_type -582 1836 1168 7 652 232 295 10 168 chr12 8850252 8850322 -112407208 - B2_Mm1t SINE B2 -9 184 10 7 652 653 220 43 43 chr12 8850322 8850460 -112407070 - RSINE1 SINE B4 -17 148 11 7 652 22 35 0 0 chr12 8850482 8850511 -112407019 + AT_rich Low_complexity Low_complexity 1 29 0 7 652 921 182 0 0 chr12 8850517 8850732 -112406798 + (TG)n Simple_repeat Simple_repeat 1 215 0 7 652 671 250 0 113 chr12 8850732 8850935 -112406595 - B3A SINE B2 -16 182 3 7 652 2550 274 132 18 chr12 8850945 8851998 -112405532 - Tigger1 DNA MER2_type -1246 1172 1 7 652 315 0 0 0 chr12 8852113 8852148 -112405382 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 7 652 583 267 46 13 chr12 8852693 8852845 -112404685 - RSINE1 SINE B4 -7 158 2 7 652 423 0 0 0 chr12 8853079 8853126 -112404404 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 652 204 329 14 0 chr12 8853192 8853262 -112404268 - MIRb SINE MIR -35 233 163 7 652 199 326 51 31 chr12 8854459 8854557 -112402973 + MER5A DNA MER1_type 62 161 -28 7 652 831 281 45 0 chr12 8854642 8854930 -112402600 - L1MB7 LINE L1 -16 6168 5868 7 652 632 244 109 0 chr12 8855461 8855617 -112401913 + B3A SINE B2 2 174 -24 7 652 189 292 0 0 chr12 8855702 8855750 -112401780 + MER5B DNA MER1_type 131 178 0 7 652 297 0 0 0 chr12 8855765 8855798 -112401732 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 652 392 325 92 82 chr12 8856797 8857102 -112400428 - ORR1D2 LTR MaLR -57 313 6 7 652 288 250 0 0 chr12 8857236 8857316 -112400214 + GA-rich Low_complexity Low_complexity 3 82 0 7 652 1242 90 0 0 chr12 8857316 8857494 -112400036 + (GAA)n Simple_repeat Simple_repeat 1 178 0 7 652 227 270 83 53 chr12 8857635 8857768 -112399762 + Tigger15a DNA TcMar 493 629 -86 7 652 390 401 86 6 chr12 8858301 8858464 -112399066 - MER91A DNA Tip100 -13 183 8 7 652 1541 168 95 14 chr12 8858859 8859154 -112398376 + MTC LTR MaLR 42 360 -61 7 652 295 242 0 16 chr12 8859377 8859440 -112398090 + MTC LTR MaLR 360 421 0 7 652 199 293 0 0 chr12 8859440 8859481 -112398049 - MER5A DNA MER1_type -2 187 147 7 652 464 254 173 8 chr12 8859575 8859702 -112397828 - ID_B1 SINE B4 -72 152 5 7 652 831 309 62 19 chr12 8859700 8859957 -112397573 - B4A SINE B4 -22 270 3 7 652 351 0 0 0 chr12 8859957 8859996 -112397534 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 652 827 244 47 38 chr12 8859997 8860210 -112397320 - B4 SINE B4 -76 216 2 7 652 231 36 0 0 chr12 8860339 8860367 -112397163 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 652 904 252 95 98 chr12 8860525 8860618 -112396912 - ORR1E LTR MaLR -7 352 260 7 652 1194 48 0 7 chr12 8860618 8860766 -112396764 + B1_Mus1 SINE Alu 1 147 -1 7 652 904 252 95 98 chr12 8860766 8861020 -112396510 - ORR1E LTR MaLR -100 259 6 7 652 600 14 0 0 chr12 8862137 8862206 -112395324 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 652 407 302 56 39 chr12 8862206 8862385 -112395145 - B4 SINE B4 -7 285 104 7 652 228 132 0 70 chr12 8863357 8863414 -112394116 + (CCCCAG)n Simple_repeat Simple_repeat 6 58 0 7 652 468 247 0 0 chr12 8863715 8863869 -112393661 + (TG)n Simple_repeat Simple_repeat 1 154 0 7 652 743 112 0 26 chr12 8864687 8864843 -112392687 + (CAGG)n Simple_repeat Simple_repeat 2 153 0 7 652 1434 84 16 0 chr12 8865091 8865282 -112392248 - B2_Mm2 SINE B2 0 195 2 7 652 427 361 0 8 chr12 8865634 8865768 -112391762 - B4A SINE B4 -2 290 158 7 652 742 124 29 0 chr12 8867392 8867529 -112390001 + GA-rich Low_complexity Low_complexity 1 141 0 7 652 182 174 0 21 chr12 8868648 8868695 -112388835 + C-rich Low_complexity Low_complexity 6 51 0 7 652 252 242 15 29 chr12 8869177 8869245 -112388285 + ID4_ SINE ID 5 71 -12 7 652 1095 171 70 0 chr12 8869725 8869924 -112387606 - B3 SINE B2 -1 215 3 7 652 203 309 18 0 chr12 8870115 8870170 -112387360 + CT-rich Low_complexity Low_complexity 5 60 0 7 652 434 282 128 51 chr12 8870172 8870248 -112387282 - HAL1 LINE L1 -1230 1277 1197 7 652 643 264 76 20 chr12 8870248 8870445 -112387085 - ID_B1 SINE B4 -15 209 2 7 652 434 282 128 51 chr12 8870445 8870603 -112386927 - HAL1 LINE L1 -1311 1196 1025 7 652 398 237 8 0 chr12 8870813 8870931 -112386599 + CT-rich Low_complexity Low_complexity 2 120 0 7 652 234 319 14 0 chr12 8870976 8871048 -112386482 - ID2 SINE ID -10 73 1 7 652 215 160 0 39 chr12 8871158 8871210 -112386320 + CT-rich Low_complexity Low_complexity 2 51 0 7 652 834 288 104 36 chr12 8871579 8871964 -112385566 + MLT1D LTR MaLR 86 496 -9 7 652 351 0 0 0 chr12 8872387 8872426 -112385104 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 652 788 122 0 61 chr12 8872942 8873073 -112384457 - B1_Mur3 SINE Alu 0 149 27 7 652 1833 204 60 20 chr12 8873557 8873957 -112383573 + MTD LTR MaLR 1 416 -3 7 652 30 27 0 0 chr12 8873976 8874013 -112383517 + AT_rich Low_complexity Low_complexity 1 37 0 7 652 320 315 168 12 chr12 8874303 8874470 -112383060 + L1MC4a LINE L1 5673 5865 -2017 7 652 207 176 0 0 chr12 8874516 8874550 -112382980 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 652 263 300 0 107 chr12 8874751 8874863 -112382667 + L2b LINE L2 3159 3258 -117 7 652 810 283 54 99 chr12 8875101 8875415 -112382115 + ORR1E LTR MaLR 6 305 -54 7 652 230 0 0 32 chr12 8875816 8875847 -112381683 + (CAA)n Simple_repeat Simple_repeat 3 32 0 7 652 926 99 35 0 chr12 8875937 8876079 -112381451 + URR1A DNA MER1_type 80 226 0 7 652 451 306 124 60 chr12 8876385 8876618 -112380912 + MLT1K LTR MaLR 91 338 -257 7 652 201 39 0 0 chr12 8876930 8876956 -112380574 + (AGGGGG)n Simple_repeat Simple_repeat 2 27 0 7 652 190 143 71 0 chr12 8877099 8877155 -112380375 + (CGTG)n Simple_repeat Simple_repeat 4 63 0 7 652 234 278 20 82 chr12 8877757 8877855 -112379675 - MTE-int LTR MaLR -1354 226 135 7 652 602 240 110 0 chr12 8877950 8878104 -112379426 - Tigger5 DNA MER2_type -2232 174 4 7 652 407 73 15 0 chr12 8878458 8878526 -112379004 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 652 495 181 0 0 chr12 8879015 8879131 -112378399 + GA-rich Low_complexity Low_complexity 2 117 0 7 652 219 333 87 35 chr12 8879265 8879380 -112378150 - L2 LINE L2 -1392 2027 1907 7 652 184 312 85 11 chr12 8879469 8879563 -112377967 + L2 LINE L2 670 770 -2649 7 652 213 317 80 40 chr12 8880119 8880244 -112377286 - L2 LINE L2 -2095 1324 1195 7 652 834 283 182 18 chr12 8881703 8882038 -112375492 - MLT1B LTR MaLR 0 390 1 7 652 263 310 0 12 chr12 8882118 8882277 -112375253 + (CATATA)n Simple_repeat Simple_repeat 1 157 0 7 652 196 287 20 78 chr12 8882646 8882748 -112374782 - MIRc SINE MIR -141 127 32 7 652 187 283 0 77 chr12 8883447 8883512 -112374018 + MIRm SINE MIR 217 276 0 7 652 409 228 194 16 chr12 8885216 8885345 -112372185 - MIRb SINE MIR -100 168 17 7 652 468 0 0 0 chr12 8885546 8885598 -112371932 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 652 1124 89 240 0 chr12 8886721 8886900 -112370630 - URR1A DNA MER1_type 0 226 5 7 652 2487 154 44 5 chr12 8887289 8887694 -112369836 - MTC LTR MaLR 0 421 1 7 652 715 331 55 58 chr12 8887832 8888162 -112369368 + MLT1G3 LTR MaLR 79 407 -188 7 652 215 154 15 44 chr12 8888356 8888424 -112369106 + CT-rich Low_complexity Low_complexity 2 67 0 7 652 660 272 42 26 chr12 8888426 8888615 -112368915 - ID_B1 SINE B4 -31 193 2 7 652 331 275 73 32 chr12 8888678 8888802 -112368728 + MIRb SINE MIR 2 130 -138 7 652 440 226 217 0 chr12 8889040 8889155 -112368375 + RSINE1 SINE B4 2 141 -24 7 652 216 0 0 0 chr12 8889164 8889188 -112368342 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 652 380 243 87 10 chr12 8889239 8889343 -112368187 - MIR SINE MIR -110 152 41 7 652 207 114 0 0 chr12 8889741 8889776 -112367754 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 652 352 314 164 0 chr12 8889948 8890088 -112367442 - RSINE1 SINE B4 0 165 3 7 652 261 0 0 0 chr12 8890099 8890128 -112367402 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 652 1141 86 40 0 chr12 8890129 8890281 -112367249 - B2_Mm2 SINE B2 -35 160 3 8 652 446 184 78 0 chr12 8890856 8890959 -112366571 + PB1D7 SINE Alu 10 120 0 8 652 955 239 17 0 chr12 8890964 8891144 -112366386 + B3 SINE B2 5 187 -29 8 652 232 78 59 0 chr12 8893171 8893222 -112364308 + (TGGGGG)n Simple_repeat Simple_repeat 2 55 0 8 652 402 212 47 0 chr12 8893695 8893780 -112363750 + Lx8 LINE L1 7088 7176 -297 8 652 793 198 180 6 chr12 8893792 8893975 -112363555 + B3 SINE B2 1 215 -1 8 652 564 278 31 89 chr12 8894624 8894916 -112362614 + B4A SINE B4 3 277 -15 8 652 707 159 0 14 chr12 8894949 8895096 -112362434 + CT-rich Low_complexity Low_complexity 5 149 0 8 652 237 296 43 54 chr12 8895097 8895190 -112362340 - B1F2 SINE Alu -36 113 22 8 652 604 253 105 35 chr12 8895108 8895280 -112362250 - B4A SINE B4 -104 188 5 8 652 977 272 51 30 chr12 8895310 8895606 -112361924 + Charlie1b DNA MER1_type 2 303 -220 8 652 303 28 0 0 chr12 8895611 8895647 -112361883 + (TC)n Simple_repeat Simple_repeat 2 37 0 8 652 923 279 88 11 chr12 8895647 8895908 -112361622 - B4 SINE B4 -11 281 1 8 652 227 273 118 47 chr12 8895916 8896085 -112361445 + Charlie1b DNA MER1_type 308 488 -35 8 652 782 133 31 0 chr12 8897090 8897218 -112360312 - URR1B DNA MER1_type 0 225 94 8 652 662 170 44 0 chr12 8897431 8897566 -112359964 - B1_Mur4 SINE Alu -5 145 5 8 652 355 203 149 0 chr12 8897695 8897769 -112359761 + PB1D10 SINE Alu 3 87 -30 8 652 1049 46 258 0 chr12 8897976 8898127 -112359403 - B2_Mm2 SINE B2 -4 191 2 8 652 2076 172 78 13 chr12 8898254 8898649 -112358881 + MTC LTR MaLR 1 421 0 8 652 1048 178 76 9 chr12 8899069 8899197 -112358333 - URR1B DNA MER1_type -1 224 88 8 652 516 72 0 0 chr12 8899197 8899266 -112358264 + (TA)n Simple_repeat Simple_repeat 2 70 0 8 652 1048 178 76 9 chr12 8899266 8899347 -112358183 - URR1B DNA MER1_type -138 87 1 8 652 418 303 70 32 chr12 8899566 8899723 -112357807 - RSINE1 SINE B4 -1 164 2 8 652 231 61 0 0 chr12 8900305 8900338 -112357192 + (C)n Simple_repeat Simple_repeat 1 33 0 8 652 252 250 17 0 chr12 8900751 8900811 -112356719 + CT-rich Low_complexity Low_complexity 1 61 0 8 652 1137 255 58 35 chr12 8901117 8901462 -112356068 + ORR1E LTR MaLR 7 359 0 8 652 814 303 45 45 chr12 8901609 8901899 -112355631 - B4A SINE B4 -2 290 1 8 652 243 0 0 0 chr12 8901956 8901983 -112355547 + (TATG)n Simple_repeat Simple_repeat 2 28 0 8 652 599 222 0 0 chr12 8902551 8902659 -112354871 + PB1D9 SINE Alu 8 115 -5 8 652 229 26 26 26 chr12 8902659 8902698 -112354832 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 652 1209 61 0 0 chr12 8902710 8902857 -112354673 + B1_Mus1 SINE Alu 2 148 0 8 652 270 0 0 0 chr12 8902857 8902887 -112354643 + (A)n Simple_repeat Simple_repeat 1 30 0 8 652 537 323 102 25 chr12 8903128 8903325 -112354205 - MTE2b LTR MaLR -1 378 167 8 652 821 226 11 42 chr12 8903336 8903525 -112354005 - B3A SINE B2 0 198 16 8 652 652 238 59 102 chr12 8903533 8903720 -112353810 - MTE2b LTR MaLR -200 179 1 8 652 255 273 12 72 chr12 8903721 8903804 -112353726 + MLT2D LTR ERVL 465 542 -18 8 652 1209 50 0 0 chr12 8904472 8904613 -112352917 + B1_Mus2 SINE Alu 2 142 -5 8 652 352 261 0 0 chr12 8904819 8904888 -112352642 - B4A SINE B4 -6 286 218 8 652 795 236 59 35 chr12 8904886 8904915 -112352615 - B3 SINE B2 0 216 194 8 652 2823 105 47 2 chr12 8904915 8905317 -112352213 - MTC LTR MaLR -1 420 1 8 652 795 236 59 35 chr12 8905317 8905489 -112352041 - B3 SINE B2 -23 193 10 8 652 926 243 55 55 chr12 8905425 8905682 -112351848 - B4A SINE B4 -12 280 24 8 652 342 0 0 0 chr12 8905695 8905733 -112351797 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 652 2245 180 144 0 chr12 8905734 8906029 -112351501 + Lx5 LINE L1 6262 6577 -473 8 652 414 0 0 0 chr12 8906029 8906075 -112351455 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 652 2245 180 144 0 chr12 8906075 8906257 -112351273 + Lx5 LINE L1 6578 6807 -243 8 652 371 167 34 149 chr12 8907423 8907571 -112349959 - MER53 DNA hAT -60 133 3 8 652 977 103 0 44 chr12 8908403 8908586 -112348944 + (TCCC)n Simple_repeat Simple_repeat 4 178 0 8 652 817 183 0 22 chr12 8908597 8908781 -112348749 + CT-rich Low_complexity Low_complexity 1 180 0 8 652 405 0 0 0 chr12 8909099 8909144 -112348386 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 652 414 0 0 0 chr12 8909144 8909189 -112348341 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 652 283 191 21 21 chr12 8909582 8909661 -112347869 + T-rich Low_complexity Low_complexity 18 96 0 8 652 891 174 0 0 chr12 8909661 8909810 -112347720 - B1_Mur4 SINE Alu 0 150 2 8 652 283 191 21 21 chr12 8909810 8909826 -112347704 + T-rich Low_complexity Low_complexity 1 17 0 8 652 896 144 21 57 chr12 8910205 8910397 -112347133 + RMER13B LTR ERVK 5 189 -719 8 652 405 322 120 43 chr12 8910387 8910806 -112346724 - MT2A LTR ERVL -90 443 1 8 652 1320 70 35 0 chr12 8910956 8911128 -112346402 + B2_Mm1t SINE B2 2 179 -14 8 652 368 143 271 15 chr12 8911138 8911271 -112346259 + B2_Mm2 SINE B2 29 195 0 8 652 353 233 52 104 chr12 8911522 8911656 -112345874 + MTEb LTR MaLR 249 375 -4 8 652 260 303 97 35 chr12 8911776 8911889 -112345641 - LTR40a LTR ERVL -399 120 1 8 652 303 270 112 65 chr12 8912198 8912212 -112345318 - PB1D9 SINE Alu -7 113 100 8 652 1829 145 108 70 chr12 8912212 8912582 -112344948 - ORR1C2 LTR MaLR 0 384 1 8 652 303 270 112 65 chr12 8912582 8912674 -112344856 - PB1D9 SINE Alu -21 99 2 8 81 1167 249 46 11 chr12 8912731 8913011 -112344519 + B4A SINE B4 1 290 -2 8 653 639 253 74 37 chr12 8913242 8913301 -112344229 - MTD LTR MaLR 0 419 364 8 653 1904 152 67 28 chr12 8913301 8913660 -112343870 + ORR1D1 LTR MaLR 2 374 0 8 653 639 253 74 37 chr12 8913660 8913769 -112343761 - MTD LTR MaLR -56 363 244 8 653 702 123 9 9 chr12 8913769 8913884 -112343646 - URR1B DNA MER1_type 0 225 111 8 653 2623 43 95 1 chr12 8913884 8914242 -112343288 - RLTR10 LTR ERVK -5 385 1 8 653 745 183 9 0 chr12 8914242 8914357 -112343173 - URR1B DNA MER1_type -109 116 1 8 653 842 215 64 10 chr12 8914357 8914558 -112342972 - MTD LTR MaLR -166 253 42 8 653 258 274 48 0 chr12 8914886 8914948 -112342582 + MER81 DNA AcHobo 2 66 -48 8 653 560 293 86 53 chr12 8915219 8915428 -112342102 - ORR1E LTR MaLR -143 216 1 8 653 240 250 78 0 chr12 8915696 8915760 -112341770 + B4 SINE B4 121 189 -103 8 653 3655 15 0 0 chr12 8916101 8916497 -112341033 + MTA_Mm LTR MaLR 1 396 0 8 653 9270 38 2 1 chr12 8916497 8917594 -112339936 + MTA_Mm-int LTR MaLR 1 1098 0 8 653 3655 15 0 0 chr12 8917594 8917990 -112339540 + MTA_Mm LTR MaLR 1 396 0 8 653 730 53 60 0 chr12 8918332 8918465 -112339065 + (GA)n Simple_repeat Simple_repeat 1 141 0 8 653 1019 182 113 5 chr12 8918852 8919056 -112338474 - URR1A DNA MER1_type 0 226 1 8 653 25 0 0 0 chr12 8921412 8921437 -112336093 + AT_rich Low_complexity Low_complexity 1 25 0 8 653 768 300 46 31 chr12 8921568 8921762 -112335768 + MLT2D LTR ERVL 1 197 -217 8 653 288 0 0 0 chr12 8921762 8921794 -112335736 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 653 768 300 46 31 chr12 8921794 8921860 -112335670 + MLT2D LTR ERVL 198 265 -149 8 653 665 312 67 17 chr12 8922137 8922483 -112335047 + L1MA9 LINE L1 5401 5763 -416 8 653 226 336 8 48 chr12 8922645 8922661 -112334869 + L1MA9 LINE L1 5999 6011 -153 8 653 324 0 0 0 chr12 8922661 8922697 -112334833 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 653 242 303 2 28 chr12 8922697 8922807 -112334723 + L1MA9 LINE L1 6178 6262 -50 8 653 336 273 111 35 chr12 8922838 8923009 -112334521 - LTR81A LTR ERV1? -1166 184 1 8 653 24 0 0 0 chr12 8923812 8923836 -112333694 + AT_rich Low_complexity Low_complexity 1 24 0 8 653 634 315 67 80 chr12 8924422 8924485 -112333045 - MLT2C1 LTR ERVL -2 395 340 8 653 1180 126 21 10 chr12 8924485 8924677 -112332853 + B2_Mm2 SINE B2 2 195 0 8 653 634 315 67 80 chr12 8924677 8925000 -112332530 - MLT2C1 LTR ERVL -58 339 14 8 653 317 251 309 6 chr12 8926559 8926727 -112330803 + ID_B1 SINE B4 4 222 -2 8 653 712 197 87 7 chr12 8926781 8926919 -112330611 + B3 SINE B2 1 149 -67 8 653 509 241 67 60 chr12 8927072 8927222 -112330308 + B3A SINE B2 30 180 -18 8 653 253 260 142 99 chr12 8927280 8927442 -112330088 - B4A SINE B4 -118 174 6 8 653 198 0 0 0 chr12 8927655 8927677 -112329853 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 653 740 102 18 9 chr12 8927677 8927786 -112329744 - PB1D9 SINE Alu -10 110 1 8 653 390 253 81 20 chr12 8930556 8930699 -112326831 + B3 SINE B2 66 216 0 8 653 351 0 0 0 chr12 8931033 8931072 -112326458 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 653 386 259 120 0 chr12 8931945 8932053 -112325477 + ID_B1 SINE B4 102 222 -2 8 653 396 153 68 27 chr12 8932362 8932436 -112325094 - B1_Mus2 SINE Alu -1 146 70 8 653 2027 266 89 106 chr12 8932523 8932717 -112324813 + L1MA6 LINE L1 3698 3872 -2271 8 653 912 123 83 72 chr12 8932717 8932910 -112324620 + B2_Mm2 SINE B2 1 195 0 8 653 2027 266 89 106 chr12 8932910 8933015 -112324515 + L1MA6 LINE L1 3873 3954 -2189 8 653 558 220 202 29 chr12 8933015 8933188 -112324342 + B3 SINE B2 1 203 -13 8 653 2027 266 89 106 chr12 8933188 8933354 -112324176 + L1MA6 LINE L1 3955 4135 -2008 8 653 1492 78 5 0 chr12 8933354 8933546 -112323984 + B2_Mm1a SINE B2 1 193 0 8 653 2027 266 89 106 chr12 8933546 8934480 -112323050 + L1MA6 LINE L1 4136 5076 -1067 8 653 357 99 48 8 chr12 8934480 8934539 -112322991 - MTD LTR MaLR -8 411 304 8 653 264 286 60 0 chr12 8934545 8934629 -112322901 + L1M2 LINE L1 4702 4790 -1353 8 653 1057 196 79 131 chr12 8934636 8934786 -112322744 - MTD LTR MaLR -73 346 211 8 653 1439 94 16 0 chr12 8934786 8934977 -112322553 - B2_Mm2 SINE B2 0 195 2 8 653 1057 196 79 131 chr12 8934977 8935155 -112322375 - MTD LTR MaLR -209 210 35 8 653 216 0 0 0 chr12 8935170 8935194 -112322336 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 653 248 144 0 22 chr12 8935231 8935276 -112322254 - MTD LTR MaLR -343 78 35 8 653 432 0 0 0 chr12 8935291 8935339 -112322191 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 653 846 257 232 16 chr12 8935351 8936340 -112321190 + L1MA6 LINE L1 5070 6281 -19 8 653 944 8 49 16 chr12 8938583 8938705 -112318825 + L1Md_F2 LINE L1 6434 6559 -23 8 653 515 176 216 28 chr12 8939607 8939783 -112317747 - B3 SINE B2 -6 210 2 8 653 182 236 18 0 chr12 8939795 8939850 -112317680 + CT-rich Low_complexity Low_complexity 1 56 0 8 653 210 37 0 0 chr12 8939855 8939882 -112317648 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 9 653 469 189 179 56 chr12 8940385 8940547 -112316983 - B3A SINE B2 -16 182 1 9 653 519 17 0 0 chr12 8941107 8941167 -112316363 + (T)n Simple_repeat Simple_repeat 1 60 0 9 653 1244 28 0 0 chr12 8941167 8941311 -112316219 - B1_Mus2 SINE Alu 0 147 4 9 653 1416 79 11 0 chr12 8943060 8943250 -112314280 + B2_Mm1t SINE B2 1 192 -1 9 653 501 17 0 0 chr12 8943900 8943958 -112313572 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 653 22 0 0 0 chr12 8944314 8944336 -112313194 + AT_rich Low_complexity Low_complexity 1 22 0 9 653 564 160 13 39 chr12 8944392 8944548 -112312982 + (TCCA)n Simple_repeat Simple_repeat 2 153 0 9 653 1042 145 25 62 chr12 8944577 8944819 -112312711 - ORR1C2 LTR MaLR 0 384 152 9 653 258 95 0 0 chr12 8946724 8946766 -112310764 + (T)n Simple_repeat Simple_repeat 1 42 0 9 653 922 39 24 0 chr12 8946768 8946895 -112310635 - B1_Mm SINE Alu 0 147 18 9 653 316 274 104 0 chr12 8947370 8947505 -112310025 + L1MB1 LINE L1 5883 6031 -137 9 653 204 333 0 0 chr12 8948127 8948196 -112309334 - L2 LINE L2 -537 2882 2814 9 653 876 235 60 0 chr12 8948283 8948483 -112309047 + ID_B1 SINE B4 2 213 -11 9 653 1380 140 18 9 chr12 8949331 8949555 -112307975 - URR1A DNA MER1_type 0 226 1 9 653 1420 79 21 0 chr12 8949679 8949868 -112307662 + B2_Mm2 SINE B2 1 193 -2 9 653 483 259 252 111 chr12 8950552 8950991 -112306539 - L1MEc LINE L1 -4579 1821 1323 9 653 1463 66 16 0 chr12 8950991 8951173 -112306357 - B2_Mm2 SINE B2 -10 185 1 9 653 483 262 78 65 chr12 8951173 8951222 -112306308 - L1MEc LINE L1 -5078 1322 1270 9 653 729 270 75 0 chr12 8951615 8951815 -112305715 + B3 SINE B2 2 216 0 9 653 630 245 27 27 chr12 8951825 8951972 -112305558 + B1_Mur1 SINE Alu 3 149 0 9 653 225 0 0 0 chr12 8951972 8951997 -112305533 + (A)n Simple_repeat Simple_repeat 1 25 0 9 653 22 35 0 0 chr12 8952095 8952124 -112305406 + AT_rich Low_complexity Low_complexity 1 29 0 9 653 562 251 113 6 chr12 8952615 8952783 -112304747 - ID_B1 SINE B4 -36 188 3 9 653 316 283 151 0 chr12 8952944 8953050 -112304480 - B4A SINE B4 -169 123 2 9 653 531 320 47 9 chr12 8953195 8953428 -112304102 - L1MB2 LINE L1 -80 6091 5850 9 653 2191 169 56 0 chr12 8953458 8953849 -112303681 + MTC LTR MaLR 1 413 -8 9 653 232 231 19 0 chr12 8955393 8955445 -112302085 - L1MDa LINE L1 -6310 323 271 9 653 295 302 162 36 chr12 8956391 8956638 -112300892 - MLT1D LTR MaLR -227 278 1 9 653 513 200 63 16 chr12 8957328 8957455 -112300075 + ID_B1 SINE B4 90 222 -2 9 653 256 240 53 0 chr12 8957500 8957575 -112299955 + ID4 SINE ID 2 80 -3 9 653 21 36 0 0 chr12 8957662 8957690 -112299840 + AT_rich Low_complexity Low_complexity 1 28 0 9 653 244 293 152 0 chr12 8957699 8957798 -112299732 - PB1D10 SINE Alu -2 115 2 9 653 645 80 0 0 chr12 8957921 8958009 -112299521 + (TG)n Simple_repeat Simple_repeat 2 89 0 9 653 363 73 0 0 chr12 8958167 8958222 -112299308 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 653 600 265 70 5 chr12 8959492 8959678 -112297852 - B3A SINE B2 0 198 1 9 653 409 198 0 0 chr12 8960444 8960525 -112297005 + ID_B1 SINE B4 144 224 0 9 653 23 0 0 0 chr12 8962500 8962523 -112295007 + AT_rich Low_complexity Low_complexity 1 23 0 9 653 666 152 6 55 chr12 8962584 8962765 -112294765 + (CAGAGA)n Simple_repeat Simple_repeat 2 173 0 9 653 597 103 9 36 chr12 8962816 8962913 -112294617 + B1_Mur4 SINE Alu 43 137 -13 9 653 1349 79 10 35 chr12 8962913 8963111 -112294419 + B2_Mm2 SINE B2 2 194 -1 9 653 597 103 9 36 chr12 8963111 8963124 -112294406 + B1_Mur4 SINE Alu 138 150 0 9 653 408 301 115 0 chr12 8963142 8963298 -112294232 - B3A SINE B2 -22 176 3 9 653 812 282 53 55 chr12 8963405 8963882 -112293648 - L1MA4 LINE L1 -1582 6114 5637 9 653 1329 105 5 10 chr12 8963914 8964106 -112293424 - B2_Mm2 SINE B2 -4 191 1 9 653 21 71 0 0 chr12 8964173 8964215 -112293315 + AT_rich Low_complexity Low_complexity 1 42 0 9 653 856 184 5 53 chr12 8964249 8964438 -112293092 - B3 SINE B2 -36 180 1 9 653 211 293 53 0 chr12 8964672 8964747 -112292783 - MIR3 SINE MIR -29 179 101 9 653 1110 205 9 5 chr12 8964955 8965171 -112292359 - RLTR33 LTR ERVK -88 590 374 9 653 449 191 21 11 chr12 8965175 8965270 -112292260 - RLTR33 LTR ERVK -408 270 175 9 653 625 109 83 6 chr12 8965359 8965516 -112292014 + CT-rich Low_complexity Low_complexity 4 172 0 9 653 772 173 64 7 chr12 8965857 8965997 -112291533 - B1_Mus1 SINE Alu 0 148 1 9 653 349 272 9 19 chr12 8966129 8966234 -112291296 + ID_B1 SINE B4 114 217 -7 9 653 1121 0 8 0 chr12 8966261 8966390 -112291140 + (GA)n Simple_repeat Simple_repeat 1 130 0 9 653 566 266 190 30 chr12 8966390 8966882 -112290648 + L1MD3 LINE L1 7300 7879 -3 9 653 289 273 15 0 chr12 8966913 8966979 -112290551 + PB1D7 SINE Alu 44 110 -10 9 653 351 220 176 0 chr12 8967034 8967125 -112290405 + PB1D10 SINE Alu 3 109 -8 9 653 255 125 0 0 chr12 8967156 8967196 -112290334 + (TATG)n Simple_repeat Simple_repeat 3 42 0 9 653 191 133 22 0 chr12 8967641 8967686 -112289844 + T-rich Low_complexity Low_complexity 3 48 0 9 653 1059 51 72 14 chr12 8967691 8967830 -112289700 - B1_Mus1 SINE Alu -1 147 1 9 653 317 167 198 0 chr12 8968848 8968944 -112288586 - B1F SINE Alu -34 115 1 9 653 232 270 0 16 chr12 8968967 8969031 -112288499 + B1F SINE Alu 17 79 -70 9 653 359 53 35 0 chr12 8969268 8969325 -112288205 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 9 653 288 0 0 0 chr12 8969413 8969445 -112288085 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 653 590 128 20 0 chr12 8969508 8969610 -112287920 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 9 653 1006 235 103 20 chr12 8969610 8969910 -112287620 - MTE2b LTR MaLR -54 325 1 9 653 367 334 44 57 chr12 8970656 8971992 -112285538 - RMER1C Other Other -500 842 380 9 653 371 311 52 67 chr12 8972005 8972627 -112284903 - RMER1C Other Other -500 842 380 9 653 229 332 25 45 chr12 8972608 8972851 -112284679 - RMER1C Other Other -500 842 605 9 653 835 188 158 14 chr12 8972939 8973160 -112284370 - L1M4 LINE L1 -1514 4632 4380 9 653 804 74 0 0 chr12 8973160 8973268 -112284262 + (TC)n Simple_repeat Simple_repeat 1 108 0 9 653 656 201 4 0 chr12 8973412 8973640 -112283890 + (CA)n Simple_repeat Simple_repeat 1 229 0 9 653 273 208 0 0 chr12 8973655 8973727 -112283803 + (CA)n Simple_repeat Simple_repeat 1 72 0 9 653 1004 117 263 0 chr12 8973902 8974081 -112283449 - URR1A DNA MER1_type 0 226 1 9 653 206 128 0 25 chr12 8974582 8974622 -112282908 + CT-rich Low_complexity Low_complexity 1 39 0 9 653 243 0 0 0 chr12 8974638 8974665 -112282865 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 9 653 566 198 0 0 chr12 8974665 8974776 -112282754 - ID_B1 SINE B4 -10 214 104 9 653 457 305 7 0 chr12 8975421 8975562 -112281968 - ID_B1 SINE B4 -82 142 1 9 653 22 35 0 0 chr12 8975762 8975791 -112281739 + AT_rich Low_complexity Low_complexity 1 29 0 9 653 1123 78 0 0 chr12 8975795 8975937 -112281593 + B1_Mus2 SINE Alu 1 142 -5 9 653 373 19 37 0 chr12 8975939 8975993 -112281537 + (CAA)n Simple_repeat Simple_repeat 2 57 0 9 653 1382 89 0 6 chr12 8975997 8976177 -112281353 - B2_Mm2 SINE B2 -14 181 3 9 653 911 148 199 6 chr12 8976359 8976535 -112280995 - B3 SINE B2 -5 211 2 9 653 233 317 105 29 chr12 8976867 8977039 -112280491 + Charlie2b DNA MER1_type 125 309 -2473 9 653 389 284 56 43 chr12 8978580 8978742 -112278788 - RSINE1 SINE B4 0 165 2 9 653 585 252 50 103 chr12 8978792 8978848 -112278682 - L1M2 LINE L1 -478 5822 5772 9 653 714 202 89 25 chr12 8978848 8979051 -112278479 - B3 SINE B2 0 216 1 9 653 585 252 50 103 chr12 8979051 8979255 -112278275 - L1M2 LINE L1 -529 5771 5577 9 653 792 271 38 35 chr12 8979551 8979841 -112277689 + B4A SINE B4 1 291 -1 9 653 979 147 264 35 chr12 8980030 8980339 -112277191 + MTC LTR MaLR 1 413 -8 9 653 372 240 88 20 chr12 8981535 8981637 -112275893 - PB1D10 SINE Alu -6 111 3 9 653 769 202 85 35 chr12 8981978 8982178 -112275352 - B3 SINE B2 -6 210 1 9 653 548 262 60 60 chr12 8982189 8982404 -112275126 - B4 SINE B4 -73 219 5 9 653 282 29 0 0 chr12 8982455 8982490 -112275040 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 9 653 231 36 0 0 chr12 8982569 8982597 -112274933 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 653 414 0 0 0 chr12 8982597 8982642 -112274888 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 653 775 187 8 0 chr12 8982665 8982799 -112274731 - B1_Mus2 SINE Alu -7 140 6 9 653 777 185 208 0 chr12 8982970 8983148 -112274382 - B3 SINE B2 0 216 2 9 653 206 323 72 53 chr12 8983573 8983721 -112273809 + L2a LINE L2 3199 3392 -34 9 653 243 61 0 0 chr12 8983739 8983772 -112273758 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 9 653 759 181 35 7 chr12 8984261 8984406 -112273124 - B1_Mur4 SINE Alu -1 149 1 9 653 25 31 0 0 chr12 8984453 8984485 -112273045 + AT_rich Low_complexity Low_complexity 1 32 0 9 653 343 198 211 29 chr12 8984692 8984900 -112272630 + L1MC4 LINE L1 7604 7849 -193 9 653 725 223 6 6 chr12 8985534 8985701 -112271829 - B3A SINE B2 -26 172 6 9 653 541 270 45 26 chr12 8985734 8985890 -112271640 - RSINE1 SINE B4 -4 161 3 9 653 552 256 25 89 chr12 8986494 8986696 -112270834 - B3A SINE B2 -6 192 4 9 653 221 267 13 39 chr12 8986855 8986933 -112270597 - B4 SINE B4 -214 78 3 1 653 636 148 0 0 chr12 8987345 8987467 -112270063 + (TC)n Simple_repeat Simple_repeat 1 122 0 1 653 479 220 10 20 chr12 8987482 8987584 -112269946 - PB1D10 SINE Alu -14 103 3 1 653 778 138 9 11 chr12 8987636 8987785 -112269745 - B1_Mus2 SINE Alu 0 150 4 1 653 185 220 85 0 chr12 8988577 8988636 -112268894 - L2b LINE L2 -213 3162 3099 1 653 1398 188 79 28 chr12 8989892 8990059 -112267471 + ORR1D1 LTR MaLR 1 178 -196 1 653 1193 90 6 0 chr12 8990059 8990236 -112267294 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 1 653 1398 188 79 28 chr12 8990236 8990385 -112267145 + ORR1D1 LTR MaLR 179 332 -42 1 653 366 132 0 0 chr12 8990387 8990440 -112267090 + B1_Mur4 SINE Alu 3 55 -95 1 653 288 161 31 31 chr12 8990440 8990451 -112267079 + ID_B1 SINE B4 84 147 -77 1 653 317 145 27 55 chr12 8990451 8990524 -112267006 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 1 653 267 250 0 0 chr12 8990535 8990651 -112266879 + GA-rich Low_complexity Low_complexity 62 177 0 1 653 497 154 32 21 chr12 8990655 8990748 -112266782 + (CAGAGA)n Simple_repeat Simple_repeat 2 95 0 1 653 616 179 0 0 chr12 8990757 8990863 -112266667 + B1_Mus2 SINE Alu 42 147 0 1 653 304 218 0 0 chr12 8990866 8990921 -112266609 + ORR1D1 LTR MaLR 330 384 0 1 653 489 272 101 26 chr12 8990937 8991126 -112266404 - ID_B1 SINE B4 -2 222 20 1 653 273 278 56 0 chr12 8991413 8991503 -112266027 + MTE2b LTR MaLR 1 95 -284 1 653 270 279 175 35 chr12 8991558 8991574 -112265956 + MTE2b LTR MaLR 165 180 -179 1 653 414 0 0 0 chr12 8991574 8991620 -112265910 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 653 438 20 0 0 chr12 8991620 8991670 -112265860 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 653 495 254 147 1 chr12 8991670 8991823 -112265707 + MTE2b LTR MaLR 181 379 0 1 653 243 250 0 0 chr12 8991979 8992037 -112265493 - PB1D7 SINE Alu -5 115 55 1 653 488 262 24 0 chr12 8992103 8992229 -112265301 - B1F SINE Alu -8 141 13 1 653 232 324 51 101 chr12 8992229 8992256 -112265274 - B4 SINE B4 -69 218 74 1 653 480 62 0 0 chr12 8992704 8992768 -112264762 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 653 219 88 0 0 chr12 8993124 8993158 -112264372 + (T)n Simple_repeat Simple_repeat 1 34 0 1 653 1254 40 0 0 chr12 8993158 8993306 -112264224 - B1_Mus1 SINE Alu 0 148 1 1 653 1273 126 5 10 chr12 8993383 8993575 -112263955 - B2_Mm1t SINE B2 -1 192 2 1 653 813 189 27 20 chr12 8993745 8993891 -112263639 - B1_Mur2 SINE Alu -1 148 2 1 653 272 282 151 23 chr12 8994357 8994575 -112262955 - LTR33 LTR ERVL -6 509 264 1 653 306 315 36 12 chr12 8994815 8994938 -112262592 + B1F SINE Alu 3 125 -24 1 653 241 193 35 0 chr12 8994989 8995046 -112262484 + (CACAG)n Simple_repeat Simple_repeat 1 59 0 1 653 524 256 148 61 chr12 8995151 8995496 -112262034 + L1MD3 LINE L1 6749 7123 -662 1 653 678 294 161 16 chr12 8995514 8996016 -112261514 + L1MD3 LINE L1 7401 7975 -20 1 653 274 321 17 43 chr12 8997383 8997500 -112260030 + HAL1 LINE L1 9 122 -2385 1 653 1018 239 19 0 chr12 8997818 8998027 -112259503 + B3 SINE B2 2 214 -2 1 653 577 157 51 91 chr12 8998030 8998205 -112259325 + Lx9 LINE L1 7477 7644 0 1 653 573 269 13 13 chr12 8998266 8998424 -112259106 - RSINE1 SINE B4 -6 159 2 1 653 522 0 0 0 chr12 8998438 8998496 -112259034 + (GGAAA)n Simple_repeat Simple_repeat 3 60 0 1 653 610 243 11 0 chr12 8998549 8998726 -112258804 + GA-rich Low_complexity Low_complexity 1 179 0 1 653 712 122 39 34 chr12 8998761 8998939 -112258591 + GA-rich Low_complexity Low_complexity 2 180 0 1 653 254 206 0 16 chr12 8998955 8999019 -112258511 + GA-rich Low_complexity Low_complexity 3 65 0 1 653 225 65 0 0 chr12 8999450 8999481 -112258049 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 653 646 231 0 0 chr12 8999495 8999638 -112257892 - B1_Mur3 SINE Alu 0 149 7 1 653 482 179 193 0 chr12 8999651 8999796 -112257734 - B3 SINE B2 -42 174 2 1 653 363 258 77 36 chr12 9000078 9000284 -112257246 + B4A SINE B4 1 227 -65 1 653 288 0 0 0 chr12 9000375 9000407 -112257123 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 2 653 233 243 71 0 chr12 9000456 9000526 -112257004 + HAL1 LINE L1 1355 1429 -1078 3 653 248 311 37 9 chr12 9000871 9000978 -112256552 + HAL1 LINE L1 1636 1745 -762 3 653 350 273 37 75 chr12 9001533 9001640 -112255890 + PB1D7 SINE Alu 12 114 -6 4 653 957 149 99 0 chr12 9001747 9001928 -112255602 + URR1A DNA MER1_type 1 199 -27 5 653 31 0 0 0 chr12 9001970 9002001 -112255529 + AT_rich Low_complexity Low_complexity 1 31 0 6 653 859 301 23 15 chr12 9003008 9003274 -112254256 + B4A SINE B4 3 270 -22 7 653 282 322 59 0 chr12 9003378 9003496 -112254034 + MER94 DNA AcHobo 2 126 -8 8 653 824 265 34 0 chr12 9004083 9004287 -112253243 + B3 SINE B2 1 211 -5 9 653 200 214 18 0 chr12 9004455 9004511 -112253019 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 653 405 217 82 20 chr12 9005182 9005325 -112252205 - B2_Mm2 SINE B2 -46 147 1 1 653 1527 62 16 0 chr12 9005764 9005956 -112251574 + B2_Mm2 SINE B2 1 195 0 1 653 824 136 55 35 chr12 9005982 9006127 -112251403 + B1_Mur4 SINE Alu 2 149 -1 1 653 407 267 0 10 chr12 9006626 9006728 -112250802 - B4A SINE B4 -7 285 185 1 653 918 171 227 0 chr12 9006749 9006925 -112250605 + B3 SINE B2 1 216 0 1 653 2084 279 146 58 chr12 9006971 9007960 -112249570 - Lx8 LINE L1 -37 7436 6361 1 653 374 316 99 45 chr12 9008221 9008423 -112249107 + MIR SINE MIR 13 225 -37 1 653 287 310 91 9 chr12 9008436 9008627 -112248903 - MIRb SINE MIR -17 251 37 1 653 243 0 0 0 chr12 9009110 9009137 -112248393 + (A)n Simple_repeat Simple_repeat 1 27 0 1 653 540 284 156 14 chr12 9009689 9009971 -112247559 - L1M4 LINE L1 -421 5763 5442 2 653 303 248 66 47 chr12 9010203 9010309 -112247221 - L1M4 LINE L1 -987 5159 5052 2 653 637 169 357 0 chr12 9010309 9010463 -112247067 + B3 SINE B2 1 209 -7 2 653 252 0 0 0 chr12 9011060 9011088 -112246442 + (T)n Simple_repeat Simple_repeat 1 28 0 2 653 1127 61 0 52 chr12 9011088 9011243 -112246287 - B1_Mus2 SINE Alu 0 147 1 2 653 249 33 0 0 chr12 9012213 9012243 -112245287 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 2 653 315 252 30 0 chr12 9012756 9012855 -112244675 - B4A SINE B4 -190 102 1 2 653 232 257 64 51 chr12 9012863 9012941 -112244589 - Charlie12 DNA MER1_type -2779 94 16 2 653 195 152 0 0 chr12 9013382 9013415 -112244115 + MIRm SINE MIR 228 260 -16 2 653 263 254 159 26 chr12 9015746 9015859 -112241671 + B1F SINE Alu 18 145 -4 2 653 23 33 0 0 chr12 9016172 9016202 -112241328 + AT_rich Low_complexity Low_complexity 1 30 0 2 653 29 0 0 0 chr12 9017079 9017108 -112240422 + AT_rich Low_complexity Low_complexity 1 29 0 3 653 369 312 93 5 chr12 9017470 9017663 -112239867 - Charlie7 DNA MER1_type -2115 497 288 3 653 459 322 20 25 chr12 9017938 9018141 -112239389 + MTD LTR MaLR 9 210 -209 3 653 810 110 8 0 chr12 9018141 9018268 -112239262 + B2_Mm2 SINE B2 2 129 -66 3 653 449 237 35 9 chr12 9018413 9018528 -112239002 - PB1D7 SINE Alu -2 118 1 3 653 24 32 0 0 chr12 9018945 9018976 -112238554 + AT_rich Low_complexity Low_complexity 1 31 0 3 653 359 200 92 39 chr12 9019695 9019825 -112237705 - LTR52 LTR ERVL -246 175 39 3 653 204 125 0 0 chr12 9020098 9020130 -112237400 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 653 1503 73 16 0 chr12 9020131 9020322 -112237208 - B2_Mm2 SINE B2 -1 194 1 3 653 434 282 135 40 chr12 9020906 9021054 -112236476 - RSINE1 SINE B4 -1 164 3 3 653 340 328 83 15 chr12 9021125 9021329 -112236201 - HAL1b LINE L1 -517 1492 1275 4 653 371 287 99 109 chr12 9023677 9023722 -112233808 - B4A SINE B4 0 292 257 4 653 225 0 0 0 chr12 9023722 9023747 -112233783 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 653 371 287 99 109 chr12 9023747 9023912 -112233618 - B4A SINE B4 -36 256 84 4 653 924 110 26 33 chr12 9024200 9024351 -112233179 - B1_Mur4 SINE Alu 0 150 1 4 653 636 256 81 42 chr12 9024385 9024747 -112232783 - MLT1A1 LTR MaLR 0 408 2 4 653 366 266 52 122 chr12 9025409 9025523 -112232007 - RLTR15 LTR ERVK -92 267 163 4 653 1087 76 14 0 chr12 9025523 9025667 -112231863 - B1_Mm SINE Alu 0 147 2 4 653 366 266 52 122 chr12 9025667 9025839 -112231691 - RLTR15 LTR ERVK -197 162 1 4 653 1930 200 82 25 chr12 9026084 9026562 -112230968 - RLTR16 LTR ERVK 0 505 1 4 653 24 0 0 0 chr12 9026850 9026874 -112230656 + AT_rich Low_complexity Low_complexity 1 24 0 4 653 420 20 0 0 chr12 9027280 9027329 -112230201 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 4 653 452 220 224 12 chr12 9027331 9027492 -112230038 - B3 SINE B2 -18 198 4 5 653 276 130 0 0 chr12 9027769 9027815 -112229715 + (TCTCCC)n Simple_repeat Simple_repeat 3 48 0 5 653 493 205 253 30 chr12 9027900 9028066 -112229464 - ID_B1 SINE B4 -20 204 2 5 653 270 136 0 0 chr12 9028119 9028163 -112229367 + (CACCAT)n Simple_repeat Simple_repeat 5 48 0 5 653 300 243 28 14 chr12 9028215 9028286 -112229244 - PB1D7 SINE Alu -6 114 43 5 653 264 122 0 0 chr12 9030273 9030314 -112227216 + (TTC)n Simple_repeat Simple_repeat 2 42 0 5 653 1142 55 0 40 chr12 9030314 9030466 -112227064 - B1_Mus2 SINE Alu 0 147 2 5 653 1093 65 0 0 chr12 9030775 9030913 -112226617 + B1_Mus1 SINE Alu 2 139 -9 5 653 21 0 0 0 chr12 9031921 9031942 -112225588 + AT_rich Low_complexity Low_complexity 1 21 0 5 653 369 0 0 0 chr12 9032484 9032525 -112225005 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 653 363 152 125 12 chr12 9032549 9032629 -112224901 - B1F SINE Alu -52 97 9 6 653 598 246 30 30 chr12 9032707 9032904 -112224626 - B3A SINE B2 -1 197 1 6 653 23 33 0 0 chr12 9033313 9033343 -112224187 + AT_rich Low_complexity Low_complexity 1 30 0 6 653 22 35 0 0 chr12 9034605 9034634 -112222896 + AT_rich Low_complexity Low_complexity 1 29 0 6 653 297 192 51 0 chr12 9035131 9035209 -112222321 + ID4_ SINE ID 2 83 0 6 653 1205 55 0 0 chr12 9035878 9036024 -112221506 + B1_Mus1 SINE Alu 3 148 0 6 653 25 31 0 0 chr12 9036453 9036485 -112221045 + AT_rich Low_complexity Low_complexity 1 32 0 6 653 918 0 0 0 chr12 9036582 9036684 -112220846 + (CTAAT)n Simple_repeat Simple_repeat 4 105 0 6 653 222 62 0 0 chr12 9037644 9037676 -112219854 + (GGA)n Simple_repeat Simple_repeat 1 32 0 6 653 441 0 0 0 chr12 9038362 9038411 -112219119 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 653 567 179 4 0 chr12 9038412 9038529 -112219001 - B1_Mus1 SINE Alu -27 122 3 7 653 325 267 75 87 chr12 9038529 9038605 -112218925 - MT2B LTR ERVL -443 158 87 7 653 207 335 0 34 chr12 9038890 9039066 -112218464 + (CACAG)n Simple_repeat Simple_repeat 4 173 0 7 653 739 219 167 43 chr12 9039074 9039355 -112218175 - Lx8 LINE L1 -236 7237 6922 7 653 968 224 21 0 chr12 9040075 9040267 -112217263 - B3 SINE B2 -19 197 2 7 653 496 177 230 0 chr12 9040621 9040734 -112216796 + B1_Mur1 SINE Alu 5 143 -6 7 653 317 279 47 39 chr12 9040857 9040984 -112216546 + RSINE1 SINE B4 36 163 -2 7 653 259 194 137 14 chr12 9043125 9043198 -112214332 + PB1D7 SINE Alu 35 116 -4 7 654 774 0 0 0 chr12 9044107 9044193 -112213337 + (TTTCC)n Simple_repeat Simple_repeat 1 86 0 7 654 225 0 0 0 chr12 9044203 9044228 -112213302 + (TCTCCC)n Simple_repeat Simple_repeat 3 27 0 7 654 1172 68 0 20 chr12 9045425 9045576 -112211954 - B1_Mus1 SINE Alu 0 148 1 8 654 630 158 19 25 chr12 9045725 9045887 -112211643 + CT-rich Low_complexity Low_complexity 3 163 0 8 654 219 158 281 0 chr12 9045889 9045946 -112211584 - B1_Mm SINE Alu -43 104 32 8 654 916 252 15 0 chr12 9046445 9046651 -112210879 + B3 SINE B2 1 209 -7 8 654 311 246 0 0 chr12 9047721 9047790 -112209740 + LTR37B LTR ERV1 204 272 -196 8 654 212 266 62 105 chr12 9048356 9048566 -112208964 + L2a LINE L2 3181 3381 -45 8 654 250 283 134 26 chr12 9048651 9048824 -112208706 + MLT1C LTR MaLR 153 372 -133 8 654 481 213 21 115 chr12 9049736 9049927 -112207603 + Lx4B LINE L1 6886 7058 0 8 654 493 287 107 65 chr12 9051419 9051710 -112205820 - ORR1E LTR MaLR -6 353 51 8 654 638 143 0 8 chr12 9052149 9052269 -112205261 + CT-rich Low_complexity Low_complexity 4 122 0 8 654 1206 74 0 0 chr12 9052275 9052437 -112205093 + (TCC)n Simple_repeat Simple_repeat 2 163 0 9 654 542 237 213 52 chr12 9056950 9057199 -112200331 + B4A SINE B4 2 290 -2 9 654 795 270 42 23 chr12 9057284 9057591 -112199939 + Charlie5 DNA MER1_type 2242 2554 -70 9 654 685 253 84 42 chr12 9058167 9058452 -112199078 + RMER15 LTR ERVL 279 575 0 9 654 703 221 19 7 chr12 9058687 9058842 -112198688 - B3 SINE B2 -12 204 48 9 654 880 227 85 29 chr12 9059540 9059812 -112197718 - Lx9 LINE L1 -1 7643 7357 9 654 238 306 61 0 chr12 9059937 9060035 -112197495 + MLT1C LTR MaLR 38 141 -326 9 654 270 206 0 0 chr12 9062599 9062667 -112194863 + CT-rich Low_complexity Low_complexity 2 69 0 9 654 286 301 52 22 chr12 9064712 9064848 -112192682 - RSINE1 SINE B4 -22 143 4 9 654 671 269 0 0 chr12 9064853 9065002 -112192528 - B1F SINE Alu 0 149 1 9 654 658 287 0 119 chr12 9065002 9065106 -112192424 - ID_B1 SINE B4 0 224 2 1 654 407 292 0 8 chr12 9065119 9065240 -112192290 - B1F SINE Alu -8 141 22 1 654 189 0 0 0 chr12 9065704 9065725 -112191805 + (A)n Simple_repeat Simple_repeat 1 21 0 1 654 191 312 21 10 chr12 9067810 9067907 -112189623 + L2a LINE L2 3032 3129 -297 1 654 237 170 37 19 chr12 9068070 9068124 -112189406 + L2c LINE L2 3333 3387 0 1 654 556 277 0 0 chr12 9068192 9068329 -112189201 + B1_Mur3 SINE Alu 5 141 -8 1 654 486 273 117 0 chr12 9068652 9068780 -112188750 + RSINE1 SINE B4 4 146 -19 1 654 369 0 0 0 chr12 9068786 9068827 -112188703 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 654 750 260 35 146 chr12 9069796 9070084 -112187446 + B4 SINE B4 5 260 -32 1 654 681 47 0 0 chr12 9070106 9070191 -112187339 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 654 280 291 35 0 chr12 9071212 9071298 -112186232 - MLT1B LTR MaLR -18 372 284 1 654 237 65 0 0 chr12 9071354 9071385 -112186145 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 1 654 21 0 0 0 chr12 9073983 9074004 -112183526 + AT_rich Low_complexity Low_complexity 1 21 0 1 654 945 263 10 0 chr12 9074030 9074239 -112183291 - Lx6 LINE L1 -12 7448 7238 1 654 1109 259 34 56 chr12 9074250 9074625 -112182905 - MTE2a LTR MaLR -14 405 51 1 654 188 0 74 0 chr12 9074828 9074855 -112182675 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1 654 259 78 39 0 chr12 9075975 9076026 -112181504 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 1 654 666 68 0 0 chr12 9077903 9077991 -112179539 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 654 497 260 73 7 chr12 9078888 9079039 -112178491 - RSINE1 SINE B4 -3 162 2 1 654 560 177 108 0 chr12 9079360 9079490 -112178040 - B1_Mur2 SINE Alu -1 148 5 1 654 7947 58 12 1 chr12 9080243 9081282 -112176248 - L1_Mus1 LINE L1 0 6567 5519 1 654 706 224 162 159 chr12 9081341 9081755 -112175775 + MTD LTR MaLR 6 419 0 1 654 227 245 0 0 chr12 9081788 9081837 -112175693 + LTR88a LTR Gypsy 665 713 -103 1 654 3815 58 0 48 chr12 9081976 9082498 -112175032 - L1_Mus2 LINE L1 0 6566 6070 1 654 612 295 33 21 chr12 9082623 9082702 -112174828 - ORR1D2 LTR MaLR 0 370 293 1 654 366 23 0 0 chr12 9082702 9082745 -112174785 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 654 612 295 33 21 chr12 9082745 9082907 -112174623 - ORR1D2 LTR MaLR -78 292 126 1 654 565 326 65 20 chr12 9083255 9083596 -112173934 + Tigger12A DNA MER2_type 169 524 -267 1 654 209 341 127 42 chr12 9084213 9084473 -112173057 - L2 LINE L2 -2674 745 464 1 654 465 19 0 0 chr12 9085595 9085649 -112171881 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 654 883 223 11 16 chr12 9085679 9085870 -112171660 + B3 SINE B2 27 216 0 1 654 1237 124 119 0 chr12 9086543 9086745 -112170785 - URR1A DNA MER1_type 0 226 1 1 654 1179 220 48 15 chr12 9086918 9087275 -112170255 + MTD LTR MaLR 1 405 -14 1 654 366 227 105 37 chr12 9087980 9088111 -112169419 + PB1D9 SINE Alu 2 129 -20 1 654 183 364 99 7 chr12 9088209 9088350 -112169180 + L2b LINE L2 2930 3083 -292 1 654 3264 66 0 0 chr12 9088667 9089063 -112168467 + MTA_Mm LTR MaLR 1 396 0 1 654 2212 132 6 124 chr12 9089089 9089189 -112168341 + MTC LTR MaLR 1 99 -322 1 654 1315 104 5 5 chr12 9089189 9089373 -112168157 + B2_Mm2 SINE B2 3 186 -9 1 654 1483 47 10 10 chr12 9089378 9089572 -112167958 + L1Md_F2 LINE L1 6377 6570 -12 1 654 2212 132 6 124 chr12 9089572 9089942 -112167588 + MTC LTR MaLR 100 421 0 1 654 2898 208 158 91 chr12 9089948 9090544 -112166986 + MTC-int LTR MaLR 10 738 -520 1 654 255 31 0 0 chr12 9090544 9090576 -112166954 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 654 2898 208 158 91 chr12 9090576 9091148 -112166382 + MTC-int LTR MaLR 739 1256 -2 1 654 2225 184 5 5 chr12 9091153 9091551 -112165979 + MTC LTR MaLR 5 402 -19 1 654 399 119 0 0 chr12 9091623 9091690 -112165840 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 654 599 228 8 16 chr12 9091716 9091841 -112165689 - B3A SINE B2 -72 126 3 1 654 235 320 10 0 chr12 9092061 9092164 -112165366 - L1MEf LINE L1 -2300 3846 3743 1 654 642 203 0 0 chr12 9092368 9092506 -112165024 + (TA)n Simple_repeat Simple_repeat 2 139 0 1 654 329 323 149 29 chr12 9092506 9092923 -112164607 - L1MEf LINE L1 -2673 3473 3007 1 654 30 59 0 0 chr12 9092931 9092982 -112164548 + AT_rich Low_complexity Low_complexity 1 51 0 1 654 476 290 145 52 chr12 9093008 9093332 -112164198 + ORR1E LTR MaLR 6 359 0 1 654 887 48 8 0 chr12 9093336 9093461 -112164069 + (TTCTC)n Simple_repeat Simple_repeat 1 126 0 1 654 448 256 47 81 chr12 9093496 9093645 -112163885 - B1F SINE Alu 0 149 6 1 654 196 82 0 76 chr12 9094136 9094202 -112163328 + (TTA)n Simple_repeat Simple_repeat 1 61 0 1 654 530 252 15 15 chr12 9094469 9094602 -112162928 - RSINE1 SINE B4 -29 136 4 1 654 667 296 0 18 chr12 9094663 9094828 -112162702 - RSINE1 SINE B4 0 165 4 1 654 345 266 62 31 chr12 9094852 9095077 -112162453 - L1MEf LINE L1 -4088 2154 1923 1 654 24 0 0 0 chr12 9095172 9095196 -112162334 + AT_rich Low_complexity Low_complexity 1 24 0 1 654 551 178 0 43 chr12 9095196 9095337 -112162193 - Lx4A LINE L1 0 7058 6924 1 654 270 0 0 0 chr12 9095972 9096002 -112161528 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 654 2815 312 62 29 chr12 9096168 9097779 -112159751 + BLACKJACK DNA AcHobo 940 2604 -340 1 654 1694 122 96 31 chr12 9097788 9098110 -112159420 + MTC LTR MaLR 1 343 -78 1 654 22 0 0 0 chr12 9098173 9098195 -112159335 + AT_rich Low_complexity Low_complexity 1 22 0 1 654 861 289 20 48 chr12 9098238 9098532 -112158998 - B4A SINE B4 0 292 7 1 654 369 250 0 0 chr12 9099544 9099616 -112157914 - ID4 SINE ID -2 81 10 1 654 259 286 31 52 chr12 9099665 9099761 -112157769 - B1F1 SINE Alu -38 111 18 1 654 3664 68 2 20 chr12 9100074 9100316 -112157214 - L1Md_F2 LINE L1 -2 6580 6348 1 654 264 30 0 0 chr12 9100316 9100349 -112157181 + (TGG)n Simple_repeat Simple_repeat 2 34 0 1 654 3664 68 2 20 chr12 9100349 9100598 -112156932 - L1Md_F2 LINE L1 -235 6347 6099 1 654 1320 71 0 37 chr12 9100598 9100788 -112156742 + L1Md_F LINE L1 776 958 -5561 1 654 2032 92 22 13 chr12 9101863 9102181 -112155349 - ORR1A4 LTR MaLR -8 321 1 1 654 769 244 154 0 chr12 9102541 9102775 -112154755 - B4 SINE B4 -18 274 5 1 654 290 291 0 55 chr12 9103603 9103712 -112153818 + ERVL-E-int LTR ERVL 1074 1176 -4491 1 654 22 0 0 0 chr12 9104066 9104088 -112153442 + AT_rich Low_complexity Low_complexity 1 22 0 1 654 5883 60 16 0 chr12 9104250 9104983 -112152547 - L1_Mus1 LINE L1 -3 6564 5820 1 654 207 302 0 16 chr12 9105204 9105268 -112152262 + GA-rich Low_complexity Low_complexity 3 65 0 1 654 321 26 0 0 chr12 9105279 9105317 -112152213 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 654 207 125 68 14 chr12 9106053 9106126 -112151404 + (TCCA)n Simple_repeat Simple_repeat 2 78 0 1 654 707 213 0 6 chr12 9106393 9106406 -112151124 + polypyrimidine Low_complexity Low_complexity 158 170 0 1 654 1221 106 0 0 chr12 9106406 9106586 -112150944 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 654 707 213 0 6 chr12 9106586 9106742 -112150788 + CT-rich Low_complexity Low_complexity 3 157 0 1 654 203 36 36 0 chr12 9106742 9106770 -112150760 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 1 654 469 204 18 15 chr12 9108206 9108325 -112149205 - B1_Mur2 SINE Alu 0 149 1 1 654 35 0 0 0 chr12 9108932 9108967 -112148563 + AT_rich Low_complexity Low_complexity 1 35 0 1 654 437 0 19 0 chr12 9109121 9109174 -112148356 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 1 654 267 31 0 0 chr12 9109174 9109206 -112148324 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 654 514 252 57 0 chr12 9109208 9109331 -112148199 - RSINE1 SINE B4 -25 140 11 1 654 288 261 0 0 chr12 9110124 9110193 -112147337 - ID4 SINE ID -13 70 2 1 654 253 242 87 12 chr12 9110217 9110340 -112147190 - MIR SINE MIR -29 239 104 1 654 307 292 0 0 chr12 9110351 9110416 -112147114 - ID4 SINE ID -9 74 10 1 654 318 50 0 0 chr12 9110528 9110568 -112146962 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 654 432 0 0 0 chr12 9110574 9110622 -112146908 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 654 603 285 57 17 chr12 9111028 9111178 -112146352 + B3A SINE B2 1 159 -39 1 654 3464 23 5 2 chr12 9111178 9111573 -112145957 - MTA_Mm LTR MaLR 0 396 1 1 654 603 285 57 17 chr12 9111573 9111597 -112145933 + B3A SINE B2 160 182 -16 1 654 21 0 0 0 chr12 9111757 9111778 -112145752 + AT_rich Low_complexity Low_complexity 1 21 0 1 654 738 286 28 63 chr12 9111935 9112219 -112145311 - B4A SINE B4 -18 274 1 1 654 842 250 24 24 chr12 9112477 9112690 -112144840 - B3 SINE B2 0 216 4 1 654 1302 166 4 13 chr12 9112841 9113067 -112144463 + URR1B DNA MER1_type 2 225 0 1 654 501 127 0 0 chr12 9113950 9114029 -112143501 + (T)n Simple_repeat Simple_repeat 1 79 0 1 654 1043 44 73 0 chr12 9114029 9114165 -112143365 - B1_Mm SINE Alu 0 147 2 1 654 486 0 0 0 chr12 9115339 9115393 -112142137 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 654 199 157 19 19 chr12 9115397 9115449 -112142081 + CT-rich Low_complexity Low_complexity 2 53 0 1 654 471 35 0 0 chr12 9117619 9117676 -112139854 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 1 654 339 85 0 0 chr12 9118619 9118666 -112138864 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1 654 449 300 80 94 chr12 9118726 9119002 -112138528 - B4 SINE B4 -18 274 3 1 654 238 294 129 11 chr12 9119407 9119500 -112138030 - LTR33 LTR ERVL -363 152 49 1 654 275 345 113 0 chr12 9120022 9120199 -112137331 + MIRb SINE MIR 36 232 -36 1 654 189 0 0 0 chr12 9120479 9120500 -112137030 + (A)n Simple_repeat Simple_repeat 1 21 0 1 654 592 281 141 29 chr12 9121535 9121558 -112135972 - B4A SINE B4 0 292 271 2 654 413 50 0 16 chr12 9121558 9121619 -112135911 + (TATG)n Simple_repeat Simple_repeat 1 60 0 2 654 592 281 141 29 chr12 9121619 9121837 -112135693 - B4A SINE B4 -22 270 24 2 654 1096 277 28 51 chr12 9122844 9123198 -112134332 + MTEa LTR MaLR 1 346 -33 2 654 2395 148 8 3 chr12 9123592 9123964 -112133566 - ORR1C1 LTR MaLR -4 374 1 2 654 438 220 126 6 chr12 9124653 9124824 -112132706 - MTE2a LTR MaLR -124 255 1 2 654 718 192 20 27 chr12 9125849 9125999 -112131531 - B1_Mur3 SINE Alu 0 149 1 2 654 1028 183 114 0 chr12 9127599 9127801 -112129729 + URR1A DNA MER1_type 2 226 0 2 654 506 272 75 19 chr12 9128489 9128650 -112128880 + MIR3 SINE MIR 17 186 -22 2 654 22 0 0 0 chr12 9129229 9129251 -112128279 + AT_rich Low_complexity Low_complexity 1 22 0 2 654 741 284 105 67 chr12 9129385 9129939 -112127591 + L1MD3 LINE L1 7420 7994 -1 2 654 285 29 0 0 chr12 9130214 9130248 -112127282 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 654 878 157 13 13 chr12 9130249 9130398 -112127132 + B1_Mur4 SINE Alu 2 150 0 2 654 246 300 28 14 chr12 9130808 9130879 -112126651 - MER81 DNA AcHobo 0 114 43 2 654 784 281 78 39 chr12 9130861 9131158 -112126372 + B4A SINE B4 13 290 -2 2 654 195 235 0 0 chr12 9132924 9132975 -112124555 + GA-rich Low_complexity Low_complexity 1 51 0 2 654 200 206 0 71 chr12 9133186 9133285 -112124245 + GA-rich Low_complexity Low_complexity 4 95 0 2 654 486 0 0 0 chr12 9133466 9133520 -112124010 + (GGA)n Simple_repeat Simple_repeat 2 55 0 2 654 280 235 10 20 chr12 9134557 9134657 -112122873 + CT-rich Low_complexity Low_complexity 3 101 0 2 654 333 274 129 26 chr12 9134688 9134804 -112122726 - B1F2 SINE Alu -21 128 1 2 654 252 144 67 67 chr12 9136835 9136939 -112120591 + (TATATG)n Simple_repeat Simple_repeat 6 109 0 2 654 257 235 57 38 chr12 9136964 9137123 -112120407 + (TATATG)n Simple_repeat Simple_repeat 5 166 0 2 654 639 236 16 0 chr12 9138814 9138941 -112118589 - RSINE1 SINE B4 -34 131 3 2 654 202 227 0 22 chr12 9138967 9139012 -112118518 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 2 654 209 382 20 0 chr12 9139609 9139711 -112117819 + L2b LINE L2 3237 3340 -35 2 654 640 122 10 0 chr12 9143522 9143620 -112113910 + Lx9 LINE L1 7383 7481 -163 2 654 318 50 0 0 chr12 9143620 9143660 -112113870 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 654 486 0 0 0 chr12 9143660 9143713 -112113817 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 654 306 194 0 51 chr12 9143725 9143823 -112113707 + Lx9 LINE L1 7552 7644 0 2 654 2342 238 148 14 chr12 9143920 9144546 -112112984 + Lx6 LINE L1 6718 7432 -28 2 654 195 129 0 0 chr12 9144546 9144577 -112112953 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2 654 2342 238 148 14 chr12 9144577 9144590 -112112940 + Lx6 LINE L1 7433 7443 -17 2 654 297 278 145 43 chr12 9144717 9144924 -112112606 - L1ME3A LINE L1 -18 6155 5928 2 654 414 0 0 0 chr12 9144961 9145007 -112112523 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2 654 726 150 13 13 chr12 9145009 9145158 -112112372 + CT-rich Low_complexity Low_complexity 4 152 0 2 654 1080 106 0 0 chr12 9145162 9145323 -112112207 + (TTCC)n Simple_repeat Simple_repeat 4 164 0 2 654 945 50 0 0 chr12 9145324 9145443 -112112087 + (TTC)n Simple_repeat Simple_repeat 3 121 0 2 654 474 18 0 0 chr12 9145440 9145495 -112112035 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 654 973 280 85 50 chr12 9145600 9146115 -112111415 - MT2A LTR ERVL 0 533 1 2 654 360 0 0 0 chr12 9146175 9146215 -112111315 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 654 588 29 0 0 chr12 9146238 9146308 -112111222 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 654 268 354 71 27 chr12 9146375 9146558 -112110972 - Charlie10b DNA MER1_type -19 223 33 2 654 951 143 280 0 chr12 9147255 9147430 -112110100 + URR1A DNA MER1_type 3 226 0 2 654 1114 280 98 14 chr12 9147455 9147882 -112109648 + MLT1C LTR MaLR 1 463 -4 2 654 548 242 58 63 chr12 9147922 9148129 -112109401 + MLT2D LTR ERVL 3 208 -206 2 654 378 238 98 10 chr12 9148196 9148298 -112109232 + B1F SINE Alu 24 134 -15 2 654 312 250 0 0 chr12 9148307 9148367 -112109163 + ID4_ SINE ID 14 73 -10 2 654 204 238 0 0 chr12 9148369 9148381 -112109149 + (TATG)n Simple_repeat Simple_repeat 3 14 0 2 654 531 0 0 0 chr12 9148381 9148440 -112109090 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 654 2850 58 0 3 chr12 9148440 9148787 -112108743 + ORR1A1 LTR MaLR 1 346 0 2 654 204 238 0 0 chr12 9148787 9148836 -112108694 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 654 1845 223 49 111 chr12 9148900 9149303 -112108227 - L1MB5 LINE L1 -195 5979 5618 2 654 491 280 23 0 chr12 9149303 9149435 -112108095 - B1F SINE Alu -14 135 1 2 654 1845 225 87 104 chr12 9149435 9149861 -112107669 - L1MB5 LINE L1 -557 5617 5153 2 654 558 93 0 0 chr12 9149861 9149947 -112107583 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 2 654 513 254 102 58 chr12 9150064 9150269 -112107261 - B3A SINE B2 0 216 3 2 654 1012 265 35 14 chr12 9150436 9150719 -112106811 - B4A SINE B4 0 292 4 2 654 1150 301 109 15 chr12 9150743 9151321 -112106209 - L1MB5 LINE L1 -1525 4621 3950 2 654 195 42 0 0 chr12 9151321 9151345 -112106185 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 654 1150 300 101 15 chr12 9151345 9151462 -112106068 - L1MB5 LINE L1 -2191 3955 3831 2 654 8872 66 1 3 chr12 9151482 9153350 -112104180 - L1_Mus2 LINE L1 -1 6565 4701 2 654 2172 282 117 46 chr12 9153342 9153483 -112104047 - L1MB5 LINE L1 -2304 3842 3672 2 654 772 102 14 0 chr12 9153483 9153630 -112103900 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 2 654 2172 282 117 46 chr12 9153630 9153845 -112103685 - L1MB5 LINE L1 -2475 3671 3443 2 654 936 137 0 0 chr12 9153845 9153998 -112103532 + (TTTC)n Simple_repeat Simple_repeat 4 156 0 2 654 2172 282 117 46 chr12 9153998 9154992 -112102538 - L1MB5 LINE L1 -2704 3442 2395 2 654 1348 245 57 23 chr12 9158249 9158661 -112098869 - MLT1J2 LTR MaLR -24 424 3 2 654 244 292 125 0 chr12 9159852 9159948 -112097582 + MIRb SINE MIR 116 223 -45 2 654 584 285 36 60 chr12 9161716 9162114 -112095416 - MLT1C LTR MaLR 0 390 1 2 654 1091 260 111 5 chr12 9163440 9163806 -112093724 + MTE-int LTR MaLR 1125 1530 -50 2 654 706 270 148 15 chr12 9163806 9164077 -112093453 + ORR1E LTR MaLR 4 310 -49 2 654 223 305 34 0 chr12 9166424 9166483 -112091047 + ID4 SINE ID 1 61 -22 2 654 407 284 26 35 chr12 9167024 9167137 -112090393 + B4A SINE B4 3 114 -178 2 654 387 0 0 0 chr12 9167350 9167393 -112090137 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 654 22 0 0 0 chr12 9168223 9168245 -112089285 + AT_rich Low_complexity Low_complexity 1 22 0 2 654 28 29 0 0 chr12 9168324 9168359 -112089171 + AT_rich Low_complexity Low_complexity 1 35 0 2 654 263 256 12 25 chr12 9169329 9169409 -112088121 + GA-rich Low_complexity Low_complexity 4 82 0 2 654 765 287 95 9 chr12 9171118 9171350 -112086180 + B4 SINE B4 40 291 -1 2 654 334 229 10 0 chr12 9174028 9174124 -112083406 + CT-rich Low_complexity Low_complexity 3 99 0 2 654 564 323 20 50 chr12 9174124 9174424 -112083106 - B4A SINE B4 0 292 2 2 655 407 257 9 37 chr12 9175205 9175314 -112082216 + MER3 DNA MER1_type 18 123 -86 2 655 659 88 0 29 chr12 9175314 9175419 -112082111 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 655 374 175 175 0 chr12 9175419 9175499 -112082031 - B1_Mur2 SINE Alu -12 137 44 2 655 456 200 0 0 chr12 9175562 9175657 -112081873 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 655 1098 214 44 74 chr12 9175670 9175968 -112081562 - B4 SINE B4 0 292 4 2 655 367 316 79 0 chr12 9176908 9177085 -112080445 - MIRb SINE MIR -14 254 64 2 655 1808 166 75 6 chr12 9177238 9177584 -112079946 + ORR1C2 LTR MaLR 15 384 0 2 655 341 240 11 28 chr12 9178268 9178448 -112079082 + (TG)n Simple_repeat Simple_repeat 1 177 0 2 655 430 190 5 63 chr12 9178518 9178709 -112078821 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 655 209 360 23 0 chr12 9178801 9178887 -112078643 + L2b LINE L2 3284 3371 -4 2 655 819 295 68 69 chr12 9178910 9179294 -112078236 - L1ME2 LINE L1 -7 6157 5772 2 655 1174 251 72 47 chr12 9179294 9179344 -112078186 - MTD LTR MaLR 0 419 367 2 655 1258 22 0 37 chr12 9179344 9179531 -112077999 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 655 1174 251 72 47 chr12 9179531 9179885 -112077645 - MTD LTR MaLR -53 366 6 2 655 563 26 0 26 chr12 9179895 9179973 -112077557 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 2 655 819 288 75 75 chr12 9179973 9180250 -112077280 - L1ME2 LINE L1 -400 5764 5494 2 655 1250 41 0 0 chr12 9180251 9180398 -112077132 - B1_Mus1 SINE Alu 0 148 2 2 655 817 245 6 0 chr12 9180639 9180798 -112076732 - RSINE1 SINE B4 -4 161 2 2 655 285 75 0 0 chr12 9180966 9181006 -112076524 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 2 655 256 263 40 40 chr12 9181056 9181155 -112076375 - L1MD LINE L1 -1117 5029 4931 2 655 495 0 0 0 chr12 9181587 9181642 -112075888 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 2 655 225 0 0 0 chr12 9181642 9181666 -112075864 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 655 22 35 0 0 chr12 9183912 9183941 -112073589 + AT_rich Low_complexity Low_complexity 1 29 0 2 655 515 153 10 0 chr12 9185164 9185262 -112072268 + G-rich Low_complexity Low_complexity 3 101 0 2 655 207 156 0 0 chr12 9188530 9188562 -112068968 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 655 988 271 52 14 chr12 9188649 9188964 -112068566 - Lx9 LINE L1 -272 7372 6903 2 655 267 345 9 0 chr12 9189061 9189174 -112068356 + MIRb SINE MIR 42 155 -113 2 655 837 167 78 26 chr12 9189327 9189518 -112068012 - URR1B DNA MER1_type 0 225 25 2 655 654 13 0 0 chr12 9190921 9190996 -112066534 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 2 655 32580 100 9 6 chr12 9191006 9197078 -112060452 - L1_Mus1 LINE L1 0 6567 467 2 655 1074 90 105 23 chr12 9197475 9197646 -112059884 + B2_Mm2 SINE B2 2 186 -9 2 655 206 299 0 42 chr12 9197964 9198081 -112059449 + MIRb SINE MIR 114 225 -43 2 655 201 318 75 91 chr12 9198115 9198302 -112059228 + MER5A DNA MER1_type 5 188 -1 3 655 609 341 91 58 chr12 9200142 9200625 -112056905 - MLT1D LTR MaLR -6 499 1 3 655 558 0 0 0 chr12 9200831 9200893 -112056637 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 655 1167 77 0 36 chr12 9200893 9201167 -112056363 + (GAA)n Simple_repeat Simple_repeat 1 263 0 3 655 827 142 8 0 chr12 9201707 9201841 -112055689 + B1_Mus2 SINE Alu 13 147 0 3 655 528 228 0 0 chr12 9202389 9202490 -112055040 - Lx9 LINE L1 -641 7003 6903 3 655 643 44 22 0 chr12 9202498 9202589 -112054941 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 3 655 2311 275 44 21 chr12 9202589 9203294 -112054236 - Lx9 LINE L1 -224 7420 6700 3 655 363 309 203 0 chr12 9203315 9203492 -112054038 + ID_B1 SINE B4 9 221 -3 3 655 237 213 0 26 chr12 9203834 9203911 -112053619 - Charlie5 DNA MER1_type -9 2615 2541 3 655 270 246 48 0 chr12 9203911 9203989 -112053541 + ID4 SINE ID 3 83 0 3 655 947 209 75 39 chr12 9203979 9204287 -112053243 - Charlie5 DNA MER1_type -69 2555 2237 3 655 272 336 8 8 chr12 9204306 9204432 -112053098 - MER3 DNA MER1_type -44 165 40 3 655 310 326 55 35 chr12 9205018 9205218 -112052312 + MIR SINE MIR 2 205 -57 3 655 780 78 9 0 chr12 9205562 9205677 -112051853 - URR1B DNA MER1_type 0 225 110 3 655 1021 258 72 18 chr12 9206521 9206853 -112050677 + MLT1A0 LTR MaLR 1 350 -15 3 655 328 379 56 19 chr12 9206911 9207177 -112050353 - L2a LINE L2 -78 3348 3073 3 655 4738 57 36 29 chr12 9207342 9207972 -112049558 - L1Md_F2 LINE L1 -12 6570 5936 3 655 231 218 0 0 chr12 9208276 9208331 -112049199 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 655 405 0 0 0 chr12 9208333 9208378 -112049152 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 655 331 282 58 0 chr12 9208404 9208507 -112049023 - MLT1A0 LTR MaLR -1 364 256 3 655 195 322 107 44 chr12 9208633 9208792 -112048738 - L2a LINE L2 -966 2453 2285 3 655 405 0 0 0 chr12 9209084 9209129 -112048401 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 655 29 28 0 0 chr12 9211025 9211061 -112046469 + AT_rich Low_complexity Low_complexity 1 36 0 3 655 911 311 157 11 chr12 9211394 9211853 -112045677 + MER44B DNA MER2_type 25 550 0 3 655 2721 27 15 9 chr12 9212551 9212883 -112044647 - L1Md_F3 LINE L1 0 6584 6251 3 655 22 0 0 0 chr12 9213257 9213279 -112044251 + AT_rich Low_complexity Low_complexity 1 22 0 3 655 3049 175 42 25 chr12 9213279 9213567 -112043963 - Lx4B LINE L1 -2 7056 6760 3 655 291 28 0 0 chr12 9213567 9213603 -112043927 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 655 3049 175 42 25 chr12 9213603 9213902 -112043628 - Lx4B LINE L1 -299 6759 6460 3 655 932 239 24 9 chr12 9214014 9214225 -112043305 - B3 SINE B2 -1 215 2 3 655 1728 129 132 6 chr12 9214337 9214656 -112042874 - ORR1B2 LTR MaLR -8 359 1 3 655 483 33 0 0 chr12 9215714 9215775 -112041755 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 655 37 0 0 0 chr12 9219847 9219884 -112037646 + AT_rich Low_complexity Low_complexity 1 37 0 3 655 198 167 0 0 chr12 9220530 9220566 -112036964 + A-rich Low_complexity Low_complexity 1 36 0 3 655 841 204 0 0 chr12 9220886 9221033 -112036497 + B1_Mus2 SINE Alu 1 147 0 3 655 26 0 0 0 chr12 9221042 9221068 -112036462 + AT_rich Low_complexity Low_complexity 1 26 0 3 655 267 296 0 39 chr12 9221068 9221162 -112036368 + RSINE1 SINE B4 3 92 -73 3 655 345 238 213 0 chr12 9221162 9221284 -112036246 + B3A SINE B2 1 148 -50 3 655 11090 127 48 8 chr12 9221293 9223405 -112034125 + L1Md_F LINE L1 195 2386 -3497 3 655 4556 39 0 6 chr12 9223405 9223944 -112033586 + L1Md_F2 LINE L1 6047 6582 0 3 655 11090 103 19 5 chr12 9223944 9224439 -112033091 + L1Md_F LINE L1 2387 2895 -2988 3 655 379 217 7 7 chr12 9224981 9225134 -112032396 + (CA)n Simple_repeat Simple_repeat 2 154 0 3 655 453 19 0 0 chr12 9225163 9225217 -112032313 + (CTCA)n Simple_repeat Simple_repeat 1 54 0 3 655 193 135 19 19 chr12 9225240 9225293 -112032237 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 655 204 40 0 0 chr12 9225519 9225544 -112031986 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 3 655 289 250 45 0 chr12 9225704 9225792 -112031738 - MTE2b LTR MaLR 0 379 288 3 655 1442 160 0 0 chr12 9225792 9226017 -112031513 + URR1B DNA MER1_type 1 225 0 3 655 303 49 0 0 chr12 9226290 9226331 -112031199 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 3 655 359 328 92 22 chr12 9227044 9227228 -112030302 + ORR1E LTR MaLR 1 197 -162 3 655 993 200 48 0 chr12 9228258 9228468 -112029062 - URR1A DNA MER1_type -6 220 1 3 655 257 317 141 0 chr12 9228859 9229001 -112028529 - MLT1B LTR MaLR -11 379 218 3 655 273 57 0 0 chr12 9229372 9229407 -112028123 + (CATG)n Simple_repeat Simple_repeat 2 36 0 3 655 31 26 0 0 chr12 9230140 9230178 -112027352 + AT_rich Low_complexity Low_complexity 1 38 0 3 655 335 307 106 7 chr12 9230222 9230363 -112027167 - MIR3 SINE MIR -14 194 40 3 655 257 188 125 30 chr12 9230834 9230931 -112026599 + MLT1A1 LTR MaLR 266 372 -2 3 655 3617 266 62 56 chr12 9232517 9233796 -112023734 - Lx5 LINE L1 0 7460 5820 3 655 250 351 22 44 chr12 9235389 9235571 -112021959 - MLT1K LTR MaLR -137 458 281 3 655 347 362 74 39 chr12 9235896 9236206 -112021324 + MLT1H-int LTR MaLR 1064 1384 -25 3 655 615 286 25 25 chr12 9236281 9236485 -112021045 + MTD LTR MaLR 1 204 -215 3 655 494 128 44 44 chr12 9236520 9236634 -112020896 + Lx9 LINE L1 7531 7644 0 3 655 287 372 6 0 chr12 9237838 9238002 -112019528 + MIR SINE MIR 87 251 -11 3 655 331 274 61 40 chr12 9239473 9239572 -112017958 + MER45C DNA Tip100 710 810 -143 3 655 1872 280 219 30 chr12 9239574 9240753 -112016777 + L1MC3 LINE L1 6368 7768 -17 3 655 403 307 15 143 chr12 9240831 9240951 -112016579 - B4A SINE B4 0 292 199 3 655 430 291 185 0 chr12 9240951 9241102 -112016428 - B3A SINE B2 -18 180 2 3 655 403 307 15 143 chr12 9241102 9241316 -112016214 - B4A SINE B4 -94 198 2 3 655 24 0 0 0 chr12 9241475 9241499 -112016031 + AT_rich Low_complexity Low_complexity 1 24 0 3 655 672 251 121 38 chr12 9241866 9242106 -112015424 + B4A SINE B4 9 268 -24 3 655 207 0 0 0 chr12 9242106 9242129 -112015401 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 655 510 152 0 0 chr12 9242130 9242255 -112015275 + GA-rich Low_complexity Low_complexity 2 126 0 3 655 243 250 88 0 chr12 9242278 9242346 -112015184 + B1F SINE Alu 42 115 -34 3 655 223 357 64 12 chr12 9243530 9243703 -112013827 + MIRb SINE MIR 40 221 -47 3 655 1388 258 48 0 chr12 9243859 9244231 -112013299 - MLT1B LTR MaLR 0 390 1 3 655 234 91 0 0 chr12 9244305 9244338 -112013192 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 3 655 740 250 123 90 chr12 9245396 9245761 -112011769 + MTE2a LTR MaLR 3 379 0 3 655 525 241 77 71 chr12 9246242 9246425 -112011105 - B3A SINE B2 -6 192 9 3 655 1072 89 14 0 chr12 9248252 9248398 -112009132 + B1_Mus1 SINE Alu 1 148 0 3 655 632 244 58 73 chr12 9249433 9249694 -112007836 - MER112 DNA MER1_type 0 261 5 3 655 225 132 0 0 chr12 9250232 9250270 -112007260 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 655 369 0 0 0 chr12 9250674 9250715 -112006815 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 655 446 298 60 22 chr12 9250748 9250882 -112006648 - RSINE1 SINE B4 -25 140 2 3 655 29 70 0 0 chr12 9250882 9250939 -112006591 + AT_rich Low_complexity Low_complexity 1 57 0 3 655 4370 158 5 8 chr12 9251020 9251772 -112005758 + L1_Mm LINE L1 4592 5341 -542 3 655 3173 124 65 12 chr12 9251775 9252280 -112005250 + Lx LINE L1 6120 6651 -3 3 655 191 36 36 0 chr12 9252283 9252311 -112005219 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 655 2158 264 121 24 chr12 9252620 9253444 -112004086 + L1MC1 LINE L1 5430 6333 0 3 655 616 302 31 31 chr12 9253743 9253938 -112003592 - B4A SINE B4 -2 290 96 3 655 264 130 0 0 chr12 9254129 9254175 -112003355 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 3 655 180 0 0 0 chr12 9254604 9254624 -112002906 + (CAG)n Simple_repeat Simple_repeat 2 21 0 3 655 894 56 0 0 chr12 9254865 9254990 -112002540 + (CA)n Simple_repeat Simple_repeat 2 126 0 3 655 420 243 27 70 chr12 9255181 9255367 -112002163 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 655 885 298 79 14 chr12 9255565 9255981 -112001549 - L2 LINE L2 -2508 911 469 3 655 1096 197 49 5 chr12 9257722 9257926 -111999604 - B3 SINE B2 0 216 4 3 655 253 246 0 16 chr12 9258923 9258985 -111998545 - ID4 SINE ID -1 82 22 3 655 564 111 0 0 chr12 9259906 9259996 -111997534 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 655 297 0 0 0 chr12 9261580 9261613 -111995917 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 3 655 1034 144 0 6 chr12 9261614 9261795 -111995735 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 3 655 566 267 32 32 chr12 9262443 9262598 -111994932 + MER20 DNA MER1_type 9 163 -56 3 655 617 258 0 8 chr12 9263853 9263982 -111993548 - ID_B1 SINE B4 -15 209 82 3 655 287 195 0 79 chr12 9265055 9265144 -111992386 + G-rich Low_complexity Low_complexity 2 83 0 3 655 212 200 55 0 chr12 9267235 9267290 -111990240 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 655 480 198 0 47 chr12 9267301 9267471 -111990059 + (CATA)n Simple_repeat Simple_repeat 4 165 0 3 655 192 191 14 42 chr12 9267497 9267568 -111989962 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 3 655 273 288 13 7 chr12 9267581 9267735 -111989795 + (CATATA)n Simple_repeat Simple_repeat 4 158 0 3 655 274 269 26 0 chr12 9267756 9267834 -111989696 + (CATA)n Simple_repeat Simple_repeat 2 81 0 3 655 507 316 61 12 chr12 9267864 9268111 -111989419 - L1MC1 LINE L1 -19 6314 6056 4 655 1558 261 35 30 chr12 9269348 9269778 -111987752 + Lx8 LINE L1 6716 7147 -326 4 655 410 170 0 11 chr12 9269793 9269888 -111987642 + CT-rich Low_complexity Low_complexity 1 94 0 4 655 4578 178 67 20 chr12 9269970 9270885 -111986645 - Lx2B LINE L1 -7 6993 6036 4 655 5147 139 24 8 chr12 9270883 9271854 -111985676 + Lx2B LINE L1 5035 6018 -982 4 655 780 11 0 0 chr12 9272087 9272176 -111985354 + (GA)n Simple_repeat Simple_repeat 1 89 0 4 655 21 0 0 0 chr12 9272928 9272949 -111984581 + AT_rich Low_complexity Low_complexity 1 21 0 4 655 789 278 15 25 chr12 9273695 9273891 -111983639 - B3A SINE B2 -4 194 1 4 655 744 318 61 47 chr12 9274953 9275313 -111982217 + MLT1A0 LTR MaLR 1 365 0 4 655 615 27 0 0 chr12 9275450 9275523 -111982007 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 655 315 71 0 0 chr12 9275523 9275564 -111981966 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 655 248 324 118 0 chr12 9275593 9275695 -111981835 - RSINE1 SINE B4 -48 117 4 4 655 183 350 60 53 chr12 9276899 9277050 -111980480 + MIRb SINE MIR 101 252 -16 4 655 476 302 139 81 chr12 9277607 9278017 -111979513 - MER57C2 LTR ERV1 0 434 1 4 655 440 261 0 56 chr12 9279123 9279249 -111978281 + PB1D9 SINE Alu 1 119 -1 4 655 723 53 18 18 chr12 9279303 9279417 -111978113 + (TCCC)n Simple_repeat Simple_repeat 2 115 0 4 655 429 287 23 8 chr12 9279465 9279595 -111977935 - B1F SINE Alu 0 149 18 4 655 734 288 67 115 chr12 9280825 9281260 -111976270 - MLT1C LTR MaLR -14 453 40 4 655 808 139 355 0 chr12 9283793 9283959 -111973571 + URR1A DNA MER1_type 2 226 0 4 655 345 62 0 0 chr12 9284905 9284953 -111972577 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 4 655 463 287 106 98 chr12 9285039 9285294 -111972236 - B4A SINE B4 0 292 36 4 655 588 264 4 107 chr12 9286387 9286620 -111970910 - ID_B1 SINE B4 -11 213 5 4 655 339 197 0 0 chr12 9287619 9287680 -111969850 - MTC LTR MaLR -62 359 299 4 655 692 113 0 0 chr12 9287676 9287782 -111969748 - MTC LTR MaLR -315 106 1 4 655 602 69 23 0 chr12 9288726 9288813 -111968717 + (ATATG)n Simple_repeat Simple_repeat 2 90 0 4 655 786 124 69 0 chr12 9288901 9289046 -111968484 - Lx4A LINE L1 -2 7056 6902 4 655 205 175 25 0 chr12 9289446 9289486 -111968044 + CT-rich Low_complexity Low_complexity 2 42 0 4 655 3659 148 64 25 chr12 9289657 9290344 -111967186 + Lx4B LINE L1 6328 7041 -17 4 655 310 319 0 0 chr12 9291346 9291440 -111966090 - MamRep137 DNA TcMar? -348 96 3 4 655 229 298 105 11 chr12 9291442 9291537 -111965993 - LTR88b LTR Gypsy? -66 771 668 4 655 242 358 41 16 chr12 9292833 9292955 -111964575 + MIRm SINE MIR 22 146 -130 4 655 191 399 24 40 chr12 9293119 9293372 -111964158 + L2 LINE L2 1047 1295 -2124 4 655 666 242 111 11 chr12 9293438 9293618 -111963912 - B3 SINE B2 -15 201 4 4 655 305 24 0 23 chr12 9293724 9293767 -111963763 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 4 655 1212 279 154 23 chr12 9293901 9294422 -111963108 + Lx8 LINE L1 6793 7381 -92 4 655 2166 208 58 63 chr12 9294525 9295114 -111962416 - RMER19C LTR ERVK -25 586 1 4 655 840 217 52 32 chr12 9295777 9296025 -111961505 - Lx9 LINE L1 -2 7642 7390 4 655 396 0 0 0 chr12 9297573 9297617 -111959913 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 655 325 339 41 19 chr12 9298435 9298755 -111958775 - ORR1E LTR MaLR 0 379 32 4 655 1216 182 14 0 chr12 9300200 9300420 -111957110 - URR1B DNA MER1_type 0 225 3 4 655 234 329 37 0 chr12 9302991 9303073 -111954457 - PB1D10 SINE Alu -32 85 1 4 655 704 298 89 42 chr12 9303807 9304235 -111953295 - MLT1C LTR MaLR -41 426 21 4 655 303 244 85 0 chr12 9304914 9304996 -111952534 - L1MDa LINE L1 -4043 2590 2502 4 655 697 284 15 25 chr12 9305008 9305207 -111952323 + B3A SINE B2 1 197 -1 4 655 381 256 35 49 chr12 9305223 9305367 -111952163 - L1MDa LINE L1 -4144 2489 2348 4 655 180 97 0 0 chr12 9305369 9305400 -111952130 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 656 357 366 21 21 chr12 9306340 9306527 -111951003 - Charlie17a DNA MER1_type -19 200 14 4 656 276 30 0 0 chr12 9307208 9307241 -111950289 + (T)n Simple_repeat Simple_repeat 1 33 0 4 656 180 0 0 0 chr12 9307915 9307935 -111949595 + (T)n Simple_repeat Simple_repeat 1 20 0 4 656 9196 4 0 0 chr12 9307971 9309588 -111947942 - L1Md_A LINE L1 0 6582 4966 4 656 443 87 57 9 chr12 9311267 9311372 -111946158 + GA-rich Low_complexity Low_complexity 1 110 0 4 656 285 128 0 0 chr12 9311952 9311999 -111945531 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 656 439 318 106 31 chr12 9313035 9313545 -111943985 - Charlie10 DNA MER1_type -157 2665 2118 4 656 25 31 0 0 chr12 9313545 9313577 -111943953 + AT_rich Low_complexity Low_complexity 1 32 0 4 656 429 129 0 0 chr12 9313586 9313656 -111943874 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 656 533 274 88 7 chr12 9313677 9313813 -111943717 - RSINE1 SINE B4 -17 148 2 4 656 240 235 0 0 chr12 9315154 9315205 -111942325 + T-rich Low_complexity Low_complexity 1 51 0 4 656 351 0 0 0 chr12 9315792 9315831 -111941699 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 656 477 0 0 0 chr12 9315831 9315883 -111941647 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 656 342 0 0 0 chr12 9317503 9317541 -111939989 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 656 580 195 53 0 chr12 9317615 9317728 -111939802 - B1_Mur2 SINE Alu -28 121 3 4 656 374 344 77 39 chr12 9317729 9317989 -111939541 - MTEb-int LTR MaLR -649 931 662 4 656 545 129 0 0 chr12 9317998 9318091 -111939439 - URR1B DNA MER1_type -6 219 127 4 656 1536 299 48 78 chr12 9318092 9318755 -111938775 - MTEb-int LTR MaLR -937 643 1 4 656 1038 248 39 26 chr12 9318755 9319069 -111938461 - MTEb LTR MaLR 0 379 1 4 656 565 275 65 51 chr12 9319088 9319400 -111938130 - L1MA8 LINE L1 -240 6072 5750 4 656 236 321 52 35 chr12 9320474 9320590 -111936940 + MER67B LTR ERV1 66 183 -478 4 656 5530 40 11 1 chr12 9322288 9322944 -111934586 - L1Md_F2 LINE L1 -8 6574 5913 4 656 249 31 0 0 chr12 9323560 9323566 -111933964 + (TTC)n Simple_repeat Simple_repeat 1 6 0 4 656 1308 79 0 0 chr12 9323566 9323744 -111933786 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 656 249 31 0 0 chr12 9323744 9323769 -111933761 + (TTC)n Simple_repeat Simple_repeat 3 27 0 4 656 377 277 98 0 chr12 9323920 9324032 -111933498 + B4A SINE B4 1 123 -169 4 656 198 0 0 0 chr12 9324122 9324144 -111933386 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 656 347 240 7 0 chr12 9324144 9324290 -111933240 + (CA)n Simple_repeat Simple_repeat 2 148 0 4 656 478 287 14 14 chr12 9324445 9324583 -111932947 - B3A SINE B2 -56 142 5 4 656 455 236 9 0 chr12 9324604 9324714 -111932816 - B1_Mur4 SINE Alu -35 115 5 4 656 6587 95 43 2 chr12 9324881 9325982 -111931548 - L1_Mus2 LINE L1 0 6566 5410 4 656 23656 94 1 37 chr12 9325979 9330342 -111927188 - L1_Mus2 LINE L1 -1276 4607 409 4 656 635 203 104 20 chr12 9330357 9330558 -111926972 + Lx9 LINE L1 7427 7644 0 4 656 444 37 0 0 chr12 9331117 9331171 -111926359 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 656 258 270 117 99 chr12 9331744 9331855 -111925675 + MLT2B1 LTR ERVL 134 246 -274 4 656 228 324 162 17 chr12 9331889 9332062 -111925468 + MLT2B1 LTR ERVL 363 560 -7 4 656 331 192 230 10 chr12 9332106 9332206 -111925324 + URR1B DNA MER1_type 1 122 -103 4 656 322 291 109 0 chr12 9334779 9334889 -111922641 + RCHARR1 DNA MER1_type 36 157 -817 4 656 256 194 24 143 chr12 9334886 9334970 -111922560 + RCHARR1 DNA MER1_type 285 358 -616 4 656 3252 81 0 0 chr12 9334970 9335391 -111922139 - L1_Mus1 LINE L1 -241 5642 5222 4 656 7447 57 9 13 chr12 9335390 9336324 -111921206 + L1_Mus1 LINE L1 5637 6566 -1 4 656 180 0 0 0 chr12 9336354 9336374 -111921156 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 656 1425 247 36 42 chr12 9336424 9336902 -111920628 + RCHARR1 DNA MER1_type 494 968 -6 4 656 257 100 20 0 chr12 9337116 9337166 -111920364 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 656 476 305 72 30 chr12 9337166 9337430 -111920100 - Lx9 LINE L1 -134 7510 7236 4 656 415 274 29 0 chr12 9337566 9337668 -111919862 - PB1D10 SINE Alu -11 106 2 4 656 449 233 50 0 chr12 9337668 9337709 -111919821 - ID SINE ID -142 82 32 4 656 1261 148 130 0 chr12 9337877 9338093 -111919437 - MTC LTR MaLR -74 347 104 4 656 309 51 0 0 chr12 9338755 9338794 -111918736 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 656 417 39 0 0 chr12 9338969 9339020 -111918510 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 656 542 49 25 0 chr12 9339030 9339111 -111918419 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 4 656 788 267 72 45 chr12 9339987 9340277 -111917253 + L1MC4 LINE L1 7743 8040 -2 4 656 587 254 28 52 chr12 9342113 9342325 -111915205 - L1MA4 LINE L1 -382 5918 5712 4 656 7471 46 35 2 chr12 9342412 9343328 -111914202 - L1Md_F2 LINE L1 0 6582 5637 4 656 231 235 0 0 chr12 9343326 9343377 -111914153 + L1M1 LINE L1 5582 5632 -671 4 656 270 0 0 0 chr12 9345542 9345572 -111911958 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 656 342 0 0 0 chr12 9347831 9347869 -111909661 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 656 348 24 0 0 chr12 9347869 9347909 -111909621 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 656 180 245 102 0 chr12 9349992 9350041 -111907489 + MIRb SINE MIR 129 182 -86 4 656 666 241 8 0 chr12 9350106 9350239 -111907291 + B1F SINE Alu 10 143 -6 4 656 189 195 0 0 chr12 9350361 9350402 -111907128 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 656 515 16 0 15 chr12 9350411 9350476 -111907054 + (TTA)n Simple_repeat Simple_repeat 2 65 0 4 656 612 97 0 0 chr12 9350649 9350742 -111906788 + (CA)n Simple_repeat Simple_repeat 2 94 0 4 656 459 0 0 0 chr12 9350742 9350792 -111906738 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 656 425 19 19 0 chr12 9351022 9351076 -111906454 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 656 429 20 0 0 chr12 9352691 9352741 -111904789 + (TATG)n Simple_repeat Simple_repeat 2 51 0 5 656 809 119 0 0 chr12 9352775 9352893 -111904637 - B2_Mm2 SINE B2 -77 118 1 5 656 252 188 0 101 chr12 9354560 9354638 -111902892 + MIR SINE MIR 110 173 -89 5 656 2444 54 35 68 chr12 9354812 9355150 -111902380 - L1_Mus2 LINE L1 -1 6565 6239 5 656 586 137 11 33 chr12 9356144 9356325 -111901205 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 5 656 624 149 158 0 chr12 9356416 9356530 -111901000 - B1_Mus2 SINE Alu -2 145 14 5 656 350 252 168 16 chr12 9356420 9356545 -111900985 - B4A SINE B4 -71 221 78 5 656 504 331 8 0 chr12 9356953 9357083 -111900447 + RSINE1 SINE B4 2 132 -33 5 656 279 0 0 0 chr12 9357091 9357122 -111900408 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 656 235 269 128 11 chr12 9357258 9357352 -111900178 - HAL1b LINE L1 -253 1756 1652 5 656 44 20 0 0 chr12 9357684 9357735 -111899795 + AT_rich Low_complexity Low_complexity 1 51 0 5 656 184 276 103 96 chr12 9358045 9358181 -111899349 - MIRc SINE MIR -123 145 9 5 656 802 297 5 63 chr12 9359590 9359813 -111897717 - ID_B1 SINE B4 -14 210 1 5 656 373 278 107 133 chr12 9360043 9360313 -111897217 - MLT1H2 LTR MaLR -48 441 179 5 656 5376 79 18 3 chr12 9361506 9362190 -111895340 + Lx3_Mus LINE L1 6316 7009 0 5 656 433 295 220 30 chr12 9363078 9363273 -111894257 + Lx8 LINE L1 7109 7334 -139 5 656 189 0 0 0 chr12 9363273 9363294 -111894236 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 656 433 295 220 30 chr12 9363294 9363402 -111894128 + Lx8 LINE L1 7335 7469 -4 5 656 391 320 46 20 chr12 9363706 9363859 -111893671 + MIRc SINE MIR 70 226 -42 5 656 26 50 0 0 chr12 9364541 9364581 -111892949 + AT_rich Low_complexity Low_complexity 1 40 0 5 656 319 301 82 0 chr12 9367080 9367226 -111890304 - Lx9 LINE L1 -127 7517 7360 5 656 237 327 38 19 chr12 9367275 9367381 -111890149 - Lx8 LINE L1 -319 7154 7047 5 656 471 269 92 46 chr12 9367974 9368169 -111889361 + MIR SINE MIR 4 207 -55 5 656 471 217 80 62 chr12 9368372 9368385 -111889145 - RMER15 LTR ERVL -111 464 454 5 656 1574 70 14 31 chr12 9368385 9368607 -111888923 + L1_Mus3 LINE L1 6415 6632 -6 5 656 471 217 80 62 chr12 9368607 9368755 -111888775 - RMER15 LTR ERVL -122 453 300 5 656 1726 310 84 27 chr12 9369153 9370159 -111887371 - Lx8 LINE L1 -1 7472 6366 5 656 223 368 54 20 chr12 9370193 9370340 -111887190 + MIRb SINE MIR 87 238 -24 5 656 250 237 17 0 chr12 9370455 9370514 -111887016 - ID4 SINE ID -16 67 8 5 656 22 0 0 0 chr12 9370944 9370966 -111886564 + AT_rich Low_complexity Low_complexity 1 22 0 5 656 474 298 89 47 chr12 9371082 9371339 -111886191 - MER44A DNA MER2_type -51 288 21 5 656 1044 70 0 0 chr12 9371643 9371785 -111885745 + (TTCTC)n Simple_repeat Simple_repeat 2 143 0 5 656 483 63 0 0 chr12 9371786 9371849 -111885681 + (TCCC)n Simple_repeat Simple_repeat 4 66 0 5 656 212 380 42 49 chr12 9372325 9372469 -111885061 - MIRb SINE MIR -125 143 1 5 656 5632 61 0 15 chr12 9373625 9374310 -111883220 + L1Md_F2 LINE L1 5908 6582 0 5 656 504 105 0 0 chr12 9376337 9376413 -111881117 + (CAAAG)n Simple_repeat Simple_repeat 3 78 0 5 656 253 175 34 20 chr12 9378814 9378960 -111878570 + (TCTG)n Simple_repeat Simple_repeat 4 151 0 5 656 26 88 0 0 chr12 9379146 9379214 -111878316 + AT_rich Low_complexity Low_complexity 1 68 0 5 656 226 281 115 40 chr12 9379237 9379437 -111878093 - L1MA8 LINE L1 -90 6201 5987 5 656 206 137 59 0 chr12 9380128 9380179 -111877351 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 656 629 292 173 0 chr12 9380248 9380525 -111877005 - L1MA8 LINE L1 -314 5977 5653 5 656 558 296 85 7 chr12 9380522 9380794 -111876736 - L1M4c LINE L1 -767 5615 5323 5 656 1235 274 35 6 chr12 9380804 9381142 -111876388 + Lx6 LINE L1 56 403 -7325 5 656 14990 162 64 21 chr12 9381140 9382780 -111874750 + Lx6 LINE L1 2895 4615 -1265 5 656 519 17 0 0 chr12 9382780 9382840 -111874690 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 656 14990 220 77 36 chr12 9382840 9385616 -111871914 + Lx6 LINE L1 4616 7460 0 5 656 336 102 0 0 chr12 9385960 9386009 -111871521 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 656 708 307 116 34 chr12 9386202 9386877 -111870653 - L1M4c LINE L1 -1053 5329 4600 5 656 1808 111 40 11 chr12 9387594 9387867 -111869663 - Lx LINE L1 -13 6641 6361 5 656 626 234 49 61 chr12 9387950 9388114 -111869416 - RSINE1 SINE B4 -1 164 3 5 656 238 363 33 11 chr12 9388211 9388395 -111869135 - L1M4c LINE L1 -3311 3065 2878 5 656 622 276 90 90 chr12 9388496 9388786 -111868744 - B4A SINE B4 -1 291 2 5 656 297 282 141 51 chr12 9388972 9389383 -111868147 - L1M4c LINE L1 -3992 2392 1945 5 656 1322 209 176 6 chr12 9389532 9389845 -111867685 + ORR1D2 LTR MaLR 1 366 -4 5 656 313 257 114 29 chr12 9389872 9390012 -111867518 - L1MB8 LINE L1 -6 6172 6021 5 656 816 320 126 76 chr12 9390181 9390724 -111866806 + MLT1G3 LTR MaLR 17 542 -13 5 656 185 380 70 0 chr12 9390735 9390877 -111866653 + MIR SINE MIR 87 238 -24 5 656 468 0 0 0 chr12 9391512 9391564 -111865966 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 656 5758 80 10 0 chr12 9392396 9393109 -111864421 - L1_Mus1 LINE L1 -5 6562 5843 5 656 1901 26 4 0 chr12 9393109 9393338 -111864192 - MTA_Mm LTR MaLR -1 395 166 5 656 1728 64 224 66 chr12 9393556 9393945 -111863585 + L1_Mus1 LINE L1 5496 5951 -616 5 656 4867 124 9 3 chr12 9393952 9394705 -111862825 - L1_Mur2 LINE L1 -2193 3684 2927 5 656 4003 137 19 15 chr12 9394724 9395393 -111862137 + Lx5 LINE L1 5587 6258 -792 5 656 2581 227 84 80 chr12 9395393 9396276 -111861254 + RMER17B LTR ERVK 1 824 -84 5 656 1841 136 117 0 chr12 9396342 9396659 -111860871 + Lx5 LINE L1 6252 6605 -445 5 656 450 0 0 0 chr12 9397746 9397796 -111859734 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 656 339 265 130 36 chr12 9397797 9397989 -111859541 - L1MA9 LINE L1 -164 6148 5939 5 656 186 43 0 0 chr12 9397995 9398018 -111859512 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 656 467 200 74 57 chr12 9398020 9398195 -111859335 - RMER17C LTR ERVK -136 274 97 5 656 890 294 13 7 chr12 9398197 9398505 -111859025 - L1MA9 LINE L1 -361 5951 5642 5 656 450 53 0 0 chr12 9399315 9399372 -111858158 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 5 656 3567 40 2 0 chr12 9400458 9400853 -111856677 - MTA_Mm LTR MaLR 0 396 1 5 656 1948 69 49 19 chr12 9401616 9401881 -111855649 - L1Md_F2 LINE L1 -1 6581 6309 5 656 3756 58 0 0 chr12 9401881 9402349 -111855181 + L1_Mm LINE L1 5086 5553 -330 5 656 414 39 0 0 chr12 9402429 9402481 -111855049 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 656 606 235 132 0 chr12 9402497 9402663 -111854867 + Lx4B LINE L1 6865 7052 -6 5 656 304 329 52 32 chr12 9403132 9403286 -111854244 - L2c LINE L2 0 3387 3231 5 656 212 179 35 18 chr12 9403723 9403780 -111853750 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 656 351 0 0 0 chr12 9403933 9403972 -111853558 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 656 378 61 0 0 chr12 9404645 9404694 -111852836 + (CATA)n Simple_repeat Simple_repeat 2 50 0 5 656 2488 56 156 0 chr12 9404914 9405234 -111852296 + L1_Mus1 LINE L1 6197 6566 -1 5 656 1387 86 48 0 chr12 9405317 9405503 -111852027 + B2_Mm2 SINE B2 1 195 0 5 656 378 0 0 0 chr12 9407196 9407238 -111850292 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 656 403 233 77 10 chr12 9407238 9407342 -111850188 - Lx9 LINE L1 -1166 6478 6368 5 656 1262 126 60 5 chr12 9407422 9407622 -111849908 - Lx2 LINE L1 0 6997 6787 5 656 2833 284 76 48 chr12 9407626 9408740 -111848790 + Lx9 LINE L1 6499 7644 0 5 656 199 343 57 0 chr12 9409127 9409197 -111848333 - MIR SINE MIR -34 228 155 5 656 185 340 114 13 chr12 9409795 9409944 -111847586 - L2 LINE L2 -1372 2047 1884 5 656 382 275 38 66 chr12 9410626 9410809 -111846721 - L1ME2 LINE L1 -295 6149 5972 5 656 361 264 14 27 chr12 9411137 9411432 -111846098 + (CA)n Simple_repeat Simple_repeat 1 290 0 5 656 412 391 0 0 chr12 9412510 9412638 -111844892 - B1F1 SINE Alu -21 128 1 5 656 369 43 0 0 chr12 9412728 9412775 -111844755 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 656 680 124 18 0 chr12 9412878 9412991 -111844539 + URR1B DNA MER1_type 111 225 0 5 656 313 220 89 14 chr12 9413681 9413774 -111843756 - MTD LTR MaLR -15 404 280 5 656 4090 95 16 14 chr12 9413775 9414340 -111843190 - L1Md_F2 LINE L1 0 6582 6017 5 656 35086 78 6 6 chr12 9414350 9420557 -111836973 - L1Md_F2 LINE L1 0 6582 380 5 656 954 301 18 22 chr12 9420598 9420870 -111836660 - MTD LTR MaLR -143 276 6 5 656 805 289 52 61 chr12 9420874 9421202 -111836328 + Lx8 LINE L1 7144 7468 -5 5 656 724 175 14 23 chr12 9421326 9421475 -111836055 - B1_Mur4 SINE Alu -2 148 2 5 656 483 371 52 30 chr12 9421596 9421863 -111835667 + MER97c DNA MER1_type? 288 560 -530 5 656 192 219 78 52 chr12 9422263 9422340 -111835190 - L3 LINE CR1 -2772 1717 1639 5 656 6202 119 78 5 chr12 9422707 9423634 -111833896 - Lx3C LINE L1 -1 6975 5982 5 656 9463 103 12 11 chr12 9423634 9425086 -111832444 + Lx3C LINE L1 4514 5964 -1012 5 656 21 0 0 0 chr12 9425113 9425134 -111832396 + AT_rich Low_complexity Low_complexity 1 21 0 5 656 595 263 44 0 chr12 9426787 9426924 -111830606 - B1_Mur2 SINE Alu -5 144 2 5 656 356 59 20 0 chr12 9427050 9427101 -111830429 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 656 2363 187 26 34 chr12 9427306 9428019 -111829511 + L1Md_F2 LINE L1 5303 5616 -681 5 656 8063 46 42 3 chr12 9428019 9428965 -111828565 + L1Md_F2 LINE L1 5588 6570 -12 5 656 1300 308 58 30 chr12 9429280 9429923 -111827607 + Charlie9 DNA MER1_type 1748 2408 -349 5 656 583 354 62 16 chr12 9429923 9430167 -111827363 + B4A SINE B4 2 256 -36 5 656 237 104 0 111 chr12 9430204 9430215 -111827315 - 4.5SRNA scRNA scRNA -5 89 83 5 656 405 116 0 0 chr12 9430215 9430284 -111827246 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 656 237 104 0 111 chr12 9430284 9430326 -111827204 - 4.5SRNA scRNA scRNA -12 82 42 5 656 540 247 127 70 chr12 9430289 9430446 -111827084 - B4A SINE B4 -125 167 2 6 656 373 280 151 34 chr12 9430453 9430837 -111826693 + L1MEc LINE L1 971 1399 -5001 6 656 754 274 20 0 chr12 9430919 9431072 -111826458 + B3A SINE B2 1 156 -42 6 656 234 235 90 56 chr12 9431678 9431727 -111825803 + L1M5 LINE L1 5727 5777 -402 6 656 231 36 0 0 chr12 9431727 9431755 -111825775 + (TA)n Simple_repeat Simple_repeat 1 28 0 6 656 234 235 90 56 chr12 9431755 9431849 -111825681 + L1M5 LINE L1 5778 5875 -304 6 656 232 130 48 72 chr12 9431924 9432007 -111825523 + (AGCTG)n Simple_repeat Simple_repeat 4 84 0 6 656 246 341 0 6 chr12 9432011 9432179 -111825351 + (CAGAA)n Simple_repeat Simple_repeat 3 169 0 6 656 267 351 0 0 chr12 9432312 9432477 -111825053 + (CAGAA)n Simple_repeat Simple_repeat 3 167 0 6 656 213 352 0 6 chr12 9432553 9432730 -111824800 + (CAGAA)n Simple_repeat Simple_repeat 3 178 0 6 656 201 365 0 0 chr12 9432774 9432941 -111824589 + (CAGAA)n Simple_repeat Simple_repeat 3 169 0 6 656 274 345 0 0 chr12 9433256 9433421 -111824109 + (CAGAA)n Simple_repeat Simple_repeat 3 167 0 6 656 265 341 0 0 chr12 9433599 9433766 -111823764 + (CAGAA)n Simple_repeat Simple_repeat 3 169 0 6 656 286 352 0 0 chr12 9433820 9433996 -111823534 + (CAGAA)n Simple_repeat Simple_repeat 3 178 0 6 656 245 114 40 79 chr12 9434077 9434153 -111823377 + (AGCTG)n Simple_repeat Simple_repeat 2 74 0 6 656 23 0 0 0 chr12 9434178 9434201 -111823329 + AT_rich Low_complexity Low_complexity 1 23 0 6 656 472 283 72 88 chr12 9434348 9434611 -111822919 - Lx9 LINE L1 -1616 6028 5770 6 656 395 194 11 0 chr12 9434613 9434706 -111822824 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 656 265 270 2 63 chr12 9434707 9434815 -111822715 - Lx8 LINE L1 -504 5793 5658 6 656 216 0 0 0 chr12 9434826 9434850 -111822680 + (A)n Simple_repeat Simple_repeat 1 24 0 6 656 292 262 0 0 chr12 9434857 9434918 -111822612 + L1M2 LINE L1 5599 5659 -632 6 656 1177 205 0 5 chr12 9434954 9435160 -111822370 - B3 SINE B2 -11 205 1 6 656 189 330 48 39 chr12 9435293 9435397 -111822133 + MIR3 SINE MIR 50 154 -54 6 656 540 249 11 89 chr12 9435472 9435662 -111821868 - MTEa LTR MaLR -4 375 201 6 656 270 0 0 0 chr12 9435662 9435692 -111821838 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 656 746 278 29 22 chr12 9435692 9435922 -111821608 - ORR1E LTR MaLR -139 255 1 6 657 249 235 71 63 chr12 9437327 9437454 -111820076 + MIRc SINE MIR 141 268 0 6 657 277 351 0 0 chr12 9438356 9438433 -111819097 - ID4 SINE ID -4 79 3 6 657 330 26 0 0 chr12 9438965 9439004 -111818526 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 657 2034 228 132 18 chr12 9439171 9439730 -111817800 - Lx8 LINE L1 0 7473 6851 6 657 1469 219 91 23 chr12 9439967 9440317 -111817213 + MTE2b LTR MaLR 3 376 -3 6 657 10425 48 4 1 chr12 9440726 9442752 -111814778 - L1Md_F2 LINE L1 0 6582 4550 6 657 803 288 19 14 chr12 9442815 9443023 -111814507 + B3 SINE B2 2 210 -6 6 657 321 26 0 0 chr12 9443220 9443258 -111814272 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 6 657 198 325 140 0 chr12 9443407 9443521 -111814009 + L2b LINE L2 2930 3059 -316 6 657 591 15 0 0 chr12 9444847 9444915 -111812615 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 657 252 0 0 0 chr12 9446353 9446381 -111811149 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 657 220 351 63 44 chr12 9447168 9447326 -111810204 + B4A SINE B4 1 161 -131 6 657 1177 102 0 0 chr12 9448402 9448549 -111808981 - B1_Mus2 SINE Alu 0 147 1 6 657 585 82 31 0 chr12 9448638 9448735 -111808795 + (GA)n Simple_repeat Simple_repeat 1 100 0 6 657 21 0 0 0 chr12 9449672 9449693 -111807837 + AT_rich Low_complexity Low_complexity 1 21 0 6 657 1236 102 1 2 chr12 9450244 9451522 -111806008 + (CA)n Simple_repeat Simple_repeat 1 1276 0 6 657 1191 95 0 0 chr12 9451559 9451926 -111805604 + (CA)n Simple_repeat Simple_repeat 1 367 0 6 657 279 0 0 0 chr12 9451926 9451956 -111805574 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 657 513 0 0 0 chr12 9452260 9452317 -111805213 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 657 217 0 102 20 chr12 9453050 9453099 -111804431 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 6 657 589 314 32 0 chr12 9453168 9453416 -111804114 + L1MA9 LINE L1 4301 4556 -1584 6 657 227 170 43 0 chr12 9453436 9453483 -111804047 - L1M3 LINE L1 -491 5677 5629 6 657 1094 281 60 24 chr12 9453494 9453909 -111803621 + L1MA9 LINE L1 5274 5703 -609 6 657 383 365 20 20 chr12 9454041 9454189 -111803341 + B3 SINE B2 1 148 -68 6 657 462 18 0 0 chr12 9454252 9454307 -111803223 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 657 719 285 40 44 chr12 9454401 9454676 -111802854 + L1MA9 LINE L1 5867 6140 -172 6 657 382 273 28 28 chr12 9454742 9454885 -111802645 + L1MA9 LINE L1 6175 6317 -17 6 657 10089 70 0 2 chr12 9455279 9457240 -111800290 - L1Md_F2 LINE L1 -13 6569 4615 6 657 289 254 89 41 chr12 9457732 9457855 -111799675 - MamGypLTR2b LTR Gypsy -9 913 785 6 657 2078 209 17 12 chr12 9458509 9458912 -111798618 - MTD LTR MaLR 0 419 15 6 657 2354 158 22 5 chr12 9458912 9459314 -111798216 + Lx LINE L1 6234 6642 -12 6 657 231 88 0 0 chr12 9459430 9459464 -111798066 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 657 798 295 52 33 chr12 9459480 9459750 -111797780 - B4 SINE B4 -17 275 1 6 657 835 257 38 14 chr12 9460236 9460445 -111797085 - B3 SINE B2 -1 215 2 6 657 339 179 0 0 chr12 9460485 9460552 -111796978 + CT-rich Low_complexity Low_complexity 2 68 0 6 657 360 302 21 0 chr12 9460571 9460667 -111796863 - PB1D10 SINE Alu -7 110 13 6 657 1111 203 9 50 chr12 9460711 9460929 -111796601 - B3 SINE B2 0 216 8 6 657 831 194 123 22 chr12 9460966 9461145 -111796385 - B3 SINE B2 -19 197 1 6 657 271 312 18 27 chr12 9462022 9462134 -111795396 - L2c LINE L2 0 3387 3277 6 657 291 267 17 13 chr12 9462367 9462463 -111795067 - L2c LINE L2 -235 3152 3047 6 657 22 35 0 0 chr12 9462919 9462948 -111794582 + AT_rich Low_complexity Low_complexity 1 29 0 6 657 756 126 0 0 chr12 9463489 9463608 -111793922 + (TCC)n Simple_repeat Simple_repeat 2 120 0 6 657 1042 113 50 0 chr12 9463608 9463749 -111793781 - B1_Mus1 SINE Alu 0 148 1 6 657 419 295 18 9 chr12 9464195 9464308 -111793222 - ID_B1 SINE B4 -2 222 109 6 657 312 319 57 25 chr12 9464201 9464323 -111793207 - B1F SINE Alu -8 141 16 6 657 512 250 99 26 chr12 9465652 9465804 -111791726 - MLT1B LTR MaLR -26 364 202 6 657 258 32 0 0 chr12 9465852 9465883 -111791647 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 657 295 279 22 44 chr12 9465889 9465979 -111791551 - B1F SINE Alu -13 136 49 6 657 231 261 67 11 chr12 9466005 9466094 -111791436 - MLT1B LTR MaLR -201 189 96 6 657 394 241 17 35 chr12 9466299 9466415 -111791115 + RLTR14 LTR ERV1 224 337 -45 6 657 329 255 93 31 chr12 9466457 9466554 -111790976 - MLT1B LTR MaLR -364 103 1 6 657 286 329 77 39 chr12 9466798 9466953 -111790577 - MER58A DNA MER1_type -4 220 60 6 657 208 184 0 20 chr12 9468524 9468574 -111788956 + (TTA)n Simple_repeat Simple_repeat 1 49 0 6 657 516 288 43 50 chr12 9468581 9468742 -111788788 - RSINE1 SINE B4 0 165 6 6 657 216 0 0 0 chr12 9469169 9469193 -111788337 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 657 360 0 0 0 chr12 9469691 9469731 -111787799 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 6 657 2034 63 8 4 chr12 9470302 9470555 -111786975 + L1_Mus3 LINE L1 6378 6631 -7 6 657 2260 142 79 3 chr12 9471017 9471383 -111786147 + ORR1B1 LTR MaLR 1 394 0 6 657 265 301 18 72 chr12 9471592 9471703 -111785827 + MLT1G3 LTR MaLR 491 595 0 6 657 273 250 0 0 chr12 9472900 9472968 -111784562 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 657 492 333 45 25 chr12 9472968 9473125 -111784405 - RSINE1 SINE B4 0 165 6 6 657 211 217 0 0 chr12 9473853 9473899 -111783631 + (CAA)n Simple_repeat Simple_repeat 3 48 0 6 657 5710 79 37 3 chr12 9473986 9474719 -111782811 + L1_Mus3 LINE L1 5880 6637 -1 6 657 384 275 28 0 chr12 9474919 9475028 -111782502 + PB1D10 SINE Alu 1 112 -5 6 657 262 293 0 51 chr12 9475279 9475358 -111782172 - B4A SINE B4 -2 290 216 6 657 312 213 0 62 chr12 9475383 9475404 -111782126 - B4A SINE B4 -46 246 230 6 657 909 155 0 34 chr12 9475404 9475551 -111781979 - B1_Mur4 SINE Alu -7 143 2 6 657 312 213 0 62 chr12 9475551 9475609 -111781921 - B4A SINE B4 -63 229 172 6 657 507 354 123 42 chr12 9475808 9476262 -111781268 + LTR33 LTR ERVL 24 514 -1 6 657 212 260 96 39 chr12 9477722 9477826 -111779704 + MIRc SINE MIR 30 139 -129 6 657 207 0 0 0 chr12 9478051 9478074 -111779456 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 657 254 264 79 22 chr12 9478293 9478382 -111779148 - Lx9 LINE L1 -1250 6394 6301 6 657 1174 175 97 0 chr12 9478412 9478618 -111778912 - MTC LTR MaLR 0 421 196 6 657 1979 65 15 4 chr12 9478625 9478886 -111778644 - RLTR27 LTR ERVK -45 264 1 6 657 1554 157 0 22 chr12 9478886 9479153 -111778377 - MMERVK10C-int LTR ERVK 0 7581 7321 6 657 1424 249 54 45 chr12 9479257 9479791 -111777739 + MMERVK10C-int LTR ERVK 4938 5476 -2105 6 657 1307 130 5 0 chr12 9480500 9480707 -111776823 - MTC LTR MaLR -213 208 1 6 657 465 138 0 0 chr12 9481334 9481428 -111776102 + (CAGAGA)n Simple_repeat Simple_repeat 6 99 0 6 657 360 0 0 0 chr12 9482578 9482618 -111774912 + (TTA)n Simple_repeat Simple_repeat 3 42 0 6 657 305 250 111 16 chr12 9482766 9482892 -111774638 + L1MEg LINE L1 9 146 -6089 6 657 356 343 79 11 chr12 9483075 9483252 -111774278 + L1MEg LINE L1 2042 2230 -5103 6 657 479 278 90 37 chr12 9483466 9483765 -111773765 + L1MEg LINE L1 2934 3248 -4085 6 657 204 67 0 0 chr12 9483796 9483826 -111773704 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 657 4150 62 10 0 chr12 9483871 9484389 -111773141 - L1_Mus3 LINE L1 -298 6340 5818 6 657 2164 99 10 13 chr12 9484389 9484695 -111772835 + L1_Mus3 LINE L1 6322 6626 -12 6 657 242 309 60 24 chr12 9484780 9484863 -111772667 + MER63D DNA AcHobo 1 86 -975 6 657 223 300 198 10 chr12 9485152 9485253 -111772277 + MER5A DNA MER1_type 35 154 -35 6 657 251 54 27 0 chr12 9485270 9485307 -111772223 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 6 657 219 303 26 0 chr12 9486999 9487075 -111770455 + T-rich Low_complexity Low_complexity 1 78 0 6 657 432 0 0 0 chr12 9487089 9487137 -111770393 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 657 504 0 0 0 chr12 9490488 9490544 -111766986 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 657 563 186 10 0 chr12 9491426 9491528 -111766002 - B1_Mur2 SINE Alu -6 143 41 7 657 1542 74 0 11 chr12 9491581 9491772 -111765758 + B2_Mm2 SINE B2 1 189 -6 7 657 792 74 0 0 chr12 9492225 9492333 -111765197 + (CATAG)n Simple_repeat Simple_repeat 5 112 0 7 657 407 357 82 18 chr12 9492451 9492622 -111764908 + MTEa LTR MaLR 1 182 -197 7 657 742 215 0 0 chr12 9492635 9492765 -111764765 + B3 SINE B2 1 130 -86 7 657 1059 91 0 0 chr12 9492790 9493013 -111764517 + (CA)n Simple_repeat Simple_repeat 1 223 0 7 657 621 278 58 6 chr12 9493024 9493198 -111764332 + MTEa LTR MaLR 185 367 -12 7 657 982 202 129 12 chr12 9493198 9493438 -111764092 + Lx5 LINE L1 6783 7050 0 7 657 212 298 0 0 chr12 9493479 9493526 -111764004 + polypyrimidine Low_complexity Low_complexity 2 48 0 7 657 449 302 77 24 chr12 9493863 9494031 -111763499 + ID_B1 SINE B4 48 223 -69 7 657 833 194 0 6 chr12 9494039 9494220 -111763310 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 657 309 208 0 0 chr12 9494242 9494314 -111763216 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 7 657 188 296 111 22 chr12 9495351 9495441 -111762089 + MIRm SINE MIR 21 118 -158 7 657 223 358 73 0 chr12 9496417 9496540 -111760990 - MIRb SINE MIR -101 167 36 7 657 399 41 0 0 chr12 9496589 9496638 -111760892 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 657 782 283 76 0 chr12 9496652 9496850 -111760680 - B3 SINE B2 -2 214 2 7 657 825 317 95 48 chr12 9496977 9497577 -111759953 - HAL1 LINE L1 -564 1943 1316 7 657 596 315 35 44 chr12 9497724 9497996 -111759534 - B4A SINE B4 0 292 2 7 657 287 333 159 15 chr12 9498365 9498560 -111758970 + MLT1D LTR MaLR 266 488 -17 7 657 718 300 51 12 chr12 9499415 9499671 -111757859 + Lx8 LINE L1 7206 7471 -2 7 657 217 295 173 30 chr12 9500357 9500490 -111757040 - MER5A DNA MER1_type 0 189 38 1 657 558 295 94 0 chr12 9500552 9500701 -111756829 + B4 SINE B4 11 173 -119 2 657 339 164 0 0 chr12 9501438 9501499 -111756031 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 657 183 80 0 0 chr12 9501548 9501573 -111755957 + (TATG)n Simple_repeat Simple_repeat 1 25 0 4 657 181 169 17 17 chr12 9501631 9501691 -111755839 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 657 643 332 52 48 chr12 9501762 9501997 -111755533 - B4A SINE B4 0 292 64 6 657 216 0 0 0 chr12 9501997 9502021 -111755509 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 7 657 643 332 52 48 chr12 9502021 9502036 -111755494 - B4A SINE B4 -229 63 41 6 657 6569 90 82 0 chr12 9502036 9502994 -111754536 - Lx3_Mus LINE L1 -1 7008 5972 8 657 643 332 52 48 chr12 9502994 9503033 -111754497 - B4A SINE B4 -252 40 2 6 657 2635 110 131 83 chr12 9503204 9503699 -111753831 - MURVY-LTR LTR ERV1 0 519 1 9 657 1058 38 0 0 chr12 9503761 9503892 -111753638 + B1_Mm SINE Alu 14 144 -3 1 657 283 23 0 43 chr12 9503908 9503954 -111753576 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 657 999 173 62 29 chr12 9505334 9505542 -111751988 - B3 SINE B2 0 216 2 1 657 279 0 0 0 chr12 9505636 9505667 -111751863 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 657 22 0 0 0 chr12 9506106 9506128 -111751402 + AT_rich Low_complexity Low_complexity 1 22 0 1 657 624 307 118 79 chr12 9507120 9507470 -111750060 + L1M3 LINE L1 3595 3919 -2221 1 657 252 0 0 0 chr12 9507470 9507498 -111750032 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 657 288 0 0 0 chr12 9507498 9507529 -111750001 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 657 624 307 118 79 chr12 9507529 9507857 -111749673 + L1M3 LINE L1 3920 4299 -1841 1 657 644 262 76 0 chr12 9507857 9508002 -111749528 + B3 SINE B2 61 216 0 1 657 901 317 86 14 chr12 9508003 9508664 -111748866 + L1_Mur3 LINE L1 5120 5836 -47 1 657 315 0 0 0 chr12 9509111 9509146 -111748384 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 657 1100 75 0 58 chr12 9509167 9509323 -111748207 - B1_Mus2 SINE Alu 0 147 1 2 657 603 226 29 22 chr12 9509535 9509671 -111747859 + B1_Mur2 SINE Alu 12 148 -1 2 657 405 238 0 0 chr12 9509671 9509772 -111747758 + GA-rich Low_complexity Low_complexity 1 101 0 2 657 354 45 0 0 chr12 9509856 9509900 -111747630 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 657 405 282 130 19 chr12 9509923 9510245 -111747285 + L1M5 LINE L1 3392 3749 -2397 2 657 4311 18 2 12 chr12 9510341 9510839 -111746691 - MT2_Mm LTR ERVL 0 493 1 2 657 302 0 0 0 chr12 9510839 9510877 -111746653 - MERVL-int LTR ERVL 0 5485 5448 2 657 390 167 46 35 chr12 9510877 9510964 -111746566 - ORR1A3-int LTR MaLR -1323 640 553 2 657 38674 17 14 0 chr12 9510964 9516251 -111741279 - MERVL-int LTR ERVL -125 5360 1 2 657 4311 18 2 12 chr12 9516251 9516749 -111740781 - MT2_Mm LTR ERVL 0 493 1 2 657 2152 101 35 0 chr12 9516899 9517215 -111740315 - Lx3_Mus LINE L1 -17 6992 6666 2 657 243 224 159 53 chr12 9517238 9517370 -111740160 + L1M5 LINE L1 3936 4081 -2065 2 657 317 288 155 32 chr12 9517429 9517738 -111739792 + L1MD LINE L1 4138 4484 -1662 2 657 547 265 33 36 chr12 9517902 9518077 -111739453 + B3A SINE B2 9 182 -11 3 657 672 318 153 12 chr12 9518236 9518827 -111738703 + Lx8 LINE L1 6715 7389 -84 3 657 332 263 78 45 chr12 9519698 9519877 -111737653 - L1MC3 LINE L1 -16 7769 7585 3 657 425 418 41 14 chr12 9520807 9521152 -111736378 + L1MEc LINE L1 33 386 -6014 3 657 626 266 116 16 chr12 9521790 9522109 -111735421 - Lx7 LINE L1 -1885 5811 5429 3 657 377 308 43 49 chr12 9522125 9522289 -111735241 - MLT1A0 LTR MaLR -202 163 1 3 657 613 281 39 6 chr12 9522321 9522500 -111735030 + Lx8 LINE L1 6666 6850 -623 3 657 204 97 0 0 chr12 9522509 9522540 -111734990 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 3 657 188 34 0 33 chr12 9522964 9522994 -111734536 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 657 2408 160 22 7 chr12 9523007 9523422 -111734108 - Lx3C LINE L1 0 6976 6556 3 657 534 294 7 0 chr12 9523476 9523619 -111733911 + B1F SINE Alu 2 145 -4 4 657 682 330 97 11 chr12 9523803 9524152 -111733378 - Lx8 LINE L1 -151 7322 6944 4 657 764 269 207 6 chr12 9524152 9524466 -111733064 + Lx8 LINE L1 6922 7298 -175 3 657 227 103 26 0 chr12 9524977 9525016 -111732514 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 4 657 386 85 17 0 chr12 9525275 9525334 -111732196 + (GGA)n Simple_repeat Simple_repeat 2 61 0 4 657 184 260 24 24 chr12 9526544 9526670 -111730860 + CT-rich Low_complexity Low_complexity 2 127 0 4 657 622 238 29 70 chr12 9527263 9527435 -111730095 - B3A SINE B2 0 198 34 4 657 1725 55 0 0 chr12 9527435 9527654 -111729876 + L1_Mus2 LINE L1 6147 6365 -201 4 657 477 0 0 0 chr12 9527654 9527707 -111729823 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 657 1272 56 11 38 chr12 9527759 9527943 -111729587 - L1Md_F3 LINE L1 -3 6581 6403 4 657 234 293 0 0 chr12 9528197 9528255 -111729275 + Lx8 LINE L1 7264 7321 -152 4 657 356 290 9 0 chr12 9528304 9528411 -111729119 - B4A SINE B4 -86 206 99 5 657 24 0 0 0 chr12 9529483 9529507 -111728023 + AT_rich Low_complexity Low_complexity 1 24 0 5 657 483 208 31 0 chr12 9529839 9529969 -111727561 - Lx2B LINE L1 -5 6995 6862 5 657 12146 145 18 4 chr12 9529981 9532178 -111725352 + L1_Mur2 LINE L1 2941 5169 -708 5 657 26 30 0 0 chr12 9534744 9534777 -111722753 + AT_rich Low_complexity Low_complexity 1 33 0 5 657 429 316 12 42 chr12 9535373 9535538 -111721992 + RSINE1 SINE B4 4 163 -2 5 657 523 242 192 22 chr12 9536162 9536455 -111721075 + MTEb LTR MaLR 2 379 0 5 657 604 311 104 34 chr12 9537507 9537979 -111719551 + MLT1D LTR MaLR 1 505 0 5 657 893 276 30 53 chr12 9538970 9539269 -111718261 - B4 SINE B4 0 292 1 5 657 253 327 60 0 chr12 9539290 9539440 -111718090 + L1M5 LINE L1 4912 5070 -1076 5 657 1191 236 139 29 chr12 9539753 9540207 -111717323 - Lx9 LINE L1 0 7644 7141 6 657 1726 185 116 12 chr12 9540207 9540552 -111716978 + RLTR11A LTR ERVK 1 381 -147 6 657 1555 154 0 4 chr12 9540552 9540819 -111716711 + L1VL1 LINE L1 1 266 -6156 6 657 29369 119 20 2 chr12 9540819 9542283 -111715247 + L1Md_F2 LINE L1 277 1765 -4118 6 657 1600 27 5 0 chr12 9542283 9542470 -111715060 + B2_Mm1t SINE B2 2 189 -4 6 657 29369 85 8 5 chr12 9542470 9546277 -111711253 + L1Md_F2 LINE L1 1766 5586 -297 6 657 7366 63 26 2 chr12 9546278 9547238 -111710292 + L1Md_F2 LINE L1 5588 6570 -12 6 657 542 137 95 0 chr12 9547238 9547333 -111710197 + RLTR11A LTR ERVK 366 469 -59 6 657 265 136 58 43 chr12 9547340 9547409 -111710121 + MYSERV16_I-int LTR ERVK 1 70 -2256 6 657 21 0 0 0 chr12 9547736 9547757 -111709773 + AT_rich Low_complexity Low_complexity 1 21 0 6 657 3018 185 60 19 chr12 9547856 9548538 -111708992 - Lx2B LINE L1 -2 6998 6289 6 657 3049 163 8 15 chr12 9548542 9549128 -111708402 + Lx2B LINE L1 5699 6280 -720 6 657 278 106 21 0 chr12 9549266 9549313 -111708217 + (CCA)n Simple_repeat Simple_repeat 3 50 0 6 657 1359 215 18 0 chr12 9550014 9550298 -111707232 - Lx2B LINE L1 -3 6997 6709 6 657 239 269 97 39 chr12 9550590 9550745 -111706785 + MER53 DNA hAT 25 188 -5 7 657 24 0 0 0 chr12 9550824 9550848 -111706682 + AT_rich Low_complexity Low_complexity 1 24 0 7 657 1603 184 17 9 chr12 9551270 9551803 -111705727 - L1_Mur2 LINE L1 -4460 1417 817 7 657 2253 214 0 0 chr12 9551838 9552249 -111705281 + Lx5 LINE L1 6563 6973 -77 7 657 510 356 44 92 chr12 9552805 9553238 -111704292 + MLT2D LTR ERVL 1 412 -2 7 657 216 0 0 0 chr12 9553276 9553300 -111704230 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 657 701 321 113 75 chr12 9553515 9553940 -111703590 - MT2A LTR ERVL 0 533 93 7 657 207 0 0 0 chr12 9553965 9553988 -111703542 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 657 1776 214 7 22 chr12 9553991 9554402 -111703128 - Lx2B LINE L1 -6 6994 6590 7 657 460 139 70 0 chr12 9554411 9554497 -111703033 + Lx3C LINE L1 6505 6596 -380 7 657 320 286 155 57 chr12 9554645 9554838 -111702692 - B3 SINE B2 -4 212 1 8 657 645 299 61 23 chr12 9555172 9555515 -111702015 + L1M5 LINE L1 5019 5374 -772 8 657 225 379 21 90 chr12 9555682 9555827 -111701703 + LTR33C LTR ERVL 3 137 -492 8 657 318 396 46 73 chr12 9555858 9556117 -111701413 + MLT2F LTR ERVL 193 444 -219 8 657 268 390 0 0 chr12 9556162 9556257 -111701273 + LTR33C LTR ERVL 533 627 -2 8 657 371 325 70 30 chr12 9556288 9556488 -111701042 + Zaphod DNA Tip100 331 538 -3493 8 657 238 326 11 11 chr12 9557087 9557180 -111700350 + MIR3 SINE MIR 113 205 -3 8 657 767 223 127 0 chr12 9557993 9558190 -111699340 + URR1A DNA MER1_type 5 226 0 8 657 7563 80 0 21 chr12 9559391 9560708 -111696822 - L1_Mus2 LINE L1 -1 6653 5282 8 657 519 17 0 0 chr12 9560708 9560768 -111696762 + (TA)n Simple_repeat Simple_repeat 1 60 0 8 657 4480 96 0 16 chr12 9560768 9560788 -111696742 - L1_Mus2 LINE L1 -602 5281 5267 8 657 7386 68 0 5 chr12 9560769 9561702 -111695828 - L1Md_F2 LINE L1 -14 6568 5641 8 657 3024 63 2 7 chr12 9561700 9562098 -111695432 + L1Md_F2 LINE L1 5240 5635 -949 8 657 368 85 0 17 chr12 9562094 9562154 -111695376 - L1Md_F2 LINE L1 -586 5297 5239 8 657 5845 96 18 5 chr12 9562151 9563168 -111694362 - L1Md_F2 LINE L1 -3770 2113 1108 8 657 316 335 36 24 chr12 9563659 9563824 -111693706 + MLT2B1 LTR ERVL 335 501 -66 9 657 241 47 47 0 chr12 9563845 9563888 -111693642 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 9 657 913 256 149 28 chr12 9564383 9564745 -111692785 + MLT1A1 LTR MaLR 1 406 -2 9 657 308 279 186 45 chr12 9565038 9565350 -111692180 - Arthur1B DNA Tip100 -41 1184 829 9 657 290 367 90 0 chr12 9565458 9565635 -111691895 - Arthur1B DNA Tip100 -657 568 376 9 657 3227 154 53 0 chr12 9565773 9566319 -111691211 - Lx LINE L1 -2 6652 6078 9 657 219 256 0 0 chr12 9566763 9566806 -111690724 + polypurine Low_complexity Low_complexity 3 45 0 9 657 1044 266 63 97 chr12 9566951 9567334 -111690196 + MTEa LTR MaLR 10 379 0 9 82 242 340 103 57 chr12 9568155 9568489 -111689041 - L2b LINE L2 -10 3377 3024 9 658 1005 249 17 14 chr12 9569207 9569522 -111688008 + L1MA4 LINE L1 5648 5959 -197 9 658 486 171 16 8 chr12 9569524 9569648 -111687882 + (TA)n Simple_repeat Simple_repeat 2 126 0 9 658 311 289 21 8 chr12 9569979 9570103 -111687427 - BLACKJACK DNA AcHobo -2 132 7 1 658 238 253 54 11 chr12 9570105 9570197 -111687333 - LTR33A LTR ERVL 0 520 425 1 658 321 89 0 0 chr12 9570620 9570665 -111686865 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 1 658 277 346 47 8 chr12 9570827 9570955 -111686575 - MIRb SINE MIR -115 153 21 1 658 193 343 14 0 chr12 9573672 9573742 -111683788 + MIRb SINE MIR 35 105 -163 1 658 180 0 0 0 chr12 9574176 9574196 -111683334 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 658 294 29 0 0 chr12 9574196 9574231 -111683299 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1 658 194 356 46 0 chr12 9574617 9574704 -111682826 + MER5A DNA MER1_type 67 157 -32 1 658 432 0 0 0 chr12 9575232 9575280 -111682250 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 658 369 0 0 0 chr12 9576077 9576118 -111681412 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 658 432 0 0 0 chr12 9579273 9579321 -111678209 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 658 474 18 0 0 chr12 9579321 9579375 -111678155 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 658 405 0 0 0 chr12 9580143 9580188 -111677342 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 658 333 0 0 0 chr12 9581004 9581041 -111676489 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 658 492 18 0 0 chr12 9587735 9587792 -111669738 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 658 676 86 19 0 chr12 9588702 9588807 -111668723 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1 658 572 0 15 0 chr12 9590065 9590133 -111667397 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 658 426 39 0 0 chr12 9590648 9590700 -111666830 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 658 279 133 0 0 chr12 9590712 9590757 -111666773 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 658 411 202 0 0 chr12 9590867 9590956 -111666574 + CT-rich Low_complexity Low_complexity 1 89 0 1 658 185 0 40 0 chr12 9590959 9590984 -111666546 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 658 3423 30 5 0 chr12 9592675 9593069 -111664461 - MTA_Mm LTR MaLR 0 396 1 1 658 411 183 0 0 chr12 9593153 9593235 -111664295 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 658 235 270 0 16 chr12 9593333 9593397 -111664133 - B4A SINE B4 -66 226 164 1 658 329 222 0 0 chr12 9593827 9593890 -111663640 - Charlie12 DNA MER1_type -3 2870 2808 1 658 512 288 33 22 chr12 9593946 9594127 -111663403 + RMER30 DNA MER1_type 19 201 -1 1 658 815 249 42 0 chr12 9594342 9594531 -111662999 - B3 SINE B2 -17 199 3 1 658 351 0 0 0 chr12 9594619 9594658 -111662872 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 658 497 200 53 15 chr12 9595217 9595349 -111662181 - L1ME2z LINE L1 -13 6431 6295 1 658 596 254 63 0 chr12 9595381 9595523 -111662007 + RSINE1 SINE B4 14 164 -1 1 658 499 283 59 37 chr12 9595564 9595751 -111661779 + B3A SINE B2 2 192 -6 1 658 1161 273 70 12 chr12 9595834 9596175 -111661355 + MTD LTR MaLR 59 419 0 1 658 2366 225 26 93 chr12 9596175 9596979 -111660551 + MTD-int LTR MaLR 1 750 -508 1 658 664 292 106 44 chr12 9597689 9598191 -111659339 - L1MDa LINE L1 -4338 2295 1763 1 658 263 253 0 26 chr12 9598194 9598271 -111659259 + RSINE1 SINE B4 3 78 -87 1 658 1546 262 59 51 chr12 9598386 9598693 -111658837 - Lx6 LINE L1 -8 7452 7140 1 658 243 0 0 0 chr12 9598693 9598720 -111658810 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 658 1546 262 59 51 chr12 9598720 9598883 -111658647 - Lx6 LINE L1 -321 7139 6978 1 658 355 294 55 0 chr12 9599771 9599880 -111657650 + B1F1 SINE Alu 6 120 -29 1 658 237 141 15 59 chr12 9599890 9599958 -111657572 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 1 658 767 174 256 0 chr12 9599993 9600165 -111657365 - B3 SINE B2 0 216 1 1 658 1008 165 126 29 chr12 9601696 9601902 -111655628 + URR1A DNA MER1_type 1 226 0 1 658 312 232 217 7 chr12 9602719 9602871 -111654659 - L1ME4a LINE L1 -126 5998 5815 1 658 1817 152 148 3 chr12 9602956 9603300 -111654230 - ORR1B1 LTR MaLR 0 394 1 1 658 273 349 88 34 chr12 9603300 9603505 -111654025 - MLT1E3 LTR MaLR -278 346 131 1 658 255 259 17 0 chr12 9604288 9604346 -111653184 - Ricksha_c DNA MuDR -1602 446 388 1 658 1840 119 14 30 chr12 9604609 9604904 -111652626 - L1_Mus3 LINE L1 -1 6637 6348 1 658 1193 260 90 7 chr12 9604970 9605320 -111652210 + MTE2b LTR MaLR 1 370 0 1 658 1761 238 66 24 chr12 9605701 9606110 -111651420 - Lx5 LINE L1 0 7050 6625 1 658 3322 190 55 24 chr12 9606134 9606856 -111650674 - Lx5 LINE L1 -506 6544 5800 1 658 7091 162 35 6 chr12 9606820 9608093 -111649437 + Lx5 LINE L1 4536 5846 -31 1 658 21 57 0 0 chr12 9608182 9608217 -111649313 + AT_rich Low_complexity Low_complexity 1 35 0 1 658 313 357 27 34 chr12 9608384 9608532 -111648998 - MIRb SINE MIR -100 168 22 1 658 233 312 24 48 chr12 9608614 9608698 -111648832 + ID4 SINE ID 2 83 0 1 658 1296 277 84 14 chr12 9608722 9609140 -111648390 - MT2A LTR ERVL 0 533 87 1 658 222 235 98 0 chr12 9609146 9609197 -111648333 + B1_Mus1 SINE Alu 16 71 -77 1 658 249 108 0 0 chr12 9610096 9610133 -111647397 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 658 235 85 21 21 chr12 9610719 9610767 -111646763 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 658 201 121 0 0 chr12 9610880 9610913 -111646617 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 658 305 109 18 0 chr12 9611034 9611089 -111646441 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 658 357 387 157 12 chr12 9611552 9612044 -111645486 - L2 LINE L2 -733 2686 2124 1 658 1359 91 67 0 chr12 9612123 9612331 -111645199 + L1_Mus2 LINE L1 6344 6565 -1 1 658 28 0 0 0 chr12 9612731 9612759 -111644771 + AT_rich Low_complexity Low_complexity 1 28 0 1 658 670 238 95 21 chr12 9612762 9612951 -111644579 + MTD LTR MaLR 1 203 -216 1 658 4177 73 7 36 chr12 9612961 9613545 -111643985 + L1_Mus2 LINE L1 6000 6566 0 1 658 478 228 69 17 chr12 9613701 9613817 -111643713 + MTD LTR MaLR 286 407 -14 1 658 189 178 0 0 chr12 9614922 9614967 -111642563 + (ATG)n Simple_repeat Simple_repeat 3 47 0 1 658 799 249 36 0 chr12 9615133 9615326 -111642204 - B3 SINE B2 -12 204 5 1 658 1969 342 31 32 chr12 9615468 9616483 -111641047 + Lx8 LINE L1 6270 7283 -190 1 658 433 302 144 14 chr12 9617296 9617511 -111640019 - Lx8 LINE L1 -359 7114 6872 1 658 1116 78 0 7 chr12 9617534 9617682 -111639848 + L1_Mm LINE L1 5439 5586 -297 1 658 7913 50 14 2 chr12 9617682 9618664 -111638866 + L1Md_F2 LINE L1 5587 6580 -2 1 658 2258 63 0 0 chr12 9618752 9619194 -111638336 - L1_Mus1 LINE L1 0 6567 6281 1 658 2762 104 9 14 chr12 9620820 9621239 -111636291 - L1_Mus1 LINE L1 0 6567 6151 1 658 25464 77 8 5 chr12 9621239 9625537 -111631993 - L1Md_F LINE L1 -1189 4694 380 1 658 249 317 87 19 chr12 9625587 9625690 -111631840 + MLT1A0 LTR MaLR 68 177 -188 1 658 212 313 43 43 chr12 9627372 9627442 -111630088 - ID4 SINE ID -11 72 3 1 658 1006 284 52 25 chr12 9627560 9627925 -111629605 - MTEb LTR MaLR -4 375 1 1 658 186 150 0 0 chr12 9628043 9628083 -111629447 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 658 1229 142 16 0 chr12 9630032 9630222 -111627308 - B2_Mm2 SINE B2 0 195 3 1 658 1625 232 14 14 chr12 9630526 9630897 -111626633 - ORR1D1 LTR MaLR -3 371 1 1 658 29 60 0 0 chr12 9631130 9631180 -111626350 + AT_rich Low_complexity Low_complexity 1 50 0 1 658 269 169 11 98 chr12 9631446 9631538 -111625992 - L1MA6 LINE L1 -14 6286 6203 1 658 256 286 37 20 chr12 9631544 9631664 -111625866 - ORR1E LTR MaLR 0 374 255 1 658 6867 52 0 0 chr12 9631664 9632550 -111624980 + L1Md_F2 LINE L1 4701 5586 -297 1 658 8027 51 2 0 chr12 9632550 9633532 -111623998 + L1Md_F2 LINE L1 5587 6570 -12 1 658 33826 35 0 0 chr12 9633536 9639003 -111618527 + L1Md_T LINE L1 26 5589 -297 1 658 8930 8 1 0 chr12 9639003 9640045 -111617485 + L1Md_T LINE L1 5590 6585 0 1 658 288 356 87 57 chr12 9640070 9640299 -111617231 - ORR1E LTR MaLR -123 236 1 1 658 888 137 0 0 chr12 9640681 9640932 -111616598 + (GA)n Simple_repeat Simple_repeat 1 251 0 1 658 432 51 0 0 chr12 9640932 9640991 -111616539 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 658 497 235 135 11 chr12 9641077 9641262 -111616268 - L1MA6 LINE L1 -195 6105 5898 1 658 4512 227 62 22 chr12 9641337 9642506 -111615024 - Lx5 LINE L1 -53 6997 5782 1 658 31461 100 22 13 chr12 9642514 9648857 -111608673 - L1Md_F2 LINE L1 -5 6577 174 1 658 426 162 0 13 chr12 9648873 9648948 -111608582 - L1VL1 LINE L1 -6348 74 1 1 658 24 0 0 0 chr12 9648954 9648978 -111608552 + AT_rich Low_complexity Low_complexity 1 24 0 1 658 2257 177 19 2 chr12 9648978 9649503 -111608027 - L1_Mur2 LINE L1 -2062 3818 3296 1 658 1885 256 73 61 chr12 9649471 9650446 -111607084 - RMER1B Other Other -2 1064 69 1 658 4521 186 34 9 chr12 9650622 9651666 -111605864 - L1_Mur2 LINE L1 -2543 3334 2265 1 658 221 268 10 20 chr12 9651669 9651768 -111605762 + (CAAA)n Simple_repeat Simple_repeat 4 101 0 1 658 525 185 0 0 chr12 9652156 9652275 -111605255 + GA-rich Low_complexity Low_complexity 1 119 0 1 658 326 246 149 50 chr12 9652813 9652954 -111604576 - HAL1-3A_ME LINE L1 -420 2438 2284 1 658 260 188 231 15 chr12 9654323 9654388 -111603142 - ID_B1 SINE B4 -5 219 141 1 658 281 26 0 26 chr12 9655407 9655446 -111602084 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 658 7754 40 2 1 chr12 9655448 9656754 -111600776 - L1Md_F2 LINE L1 -24 6558 5251 1 658 228 308 10 52 chr12 9656808 9656904 -111600626 - MIRc SINE MIR -127 141 50 1 658 219 362 60 31 chr12 9657514 9657710 -111599820 - MIR SINE MIR -62 200 3 1 658 498 321 128 39 chr12 9657894 9658176 -111599354 + MLT1A LTR MaLR 4 310 -64 1 658 3860 174 41 12 chr12 9659149 9659888 -111597642 + Lx2B LINE L1 6240 6999 -1 1 658 1226 156 81 12 chr12 9660021 9660267 -111597263 - Lx3C LINE L1 -2 6974 6712 2 658 8138 25 0 0 chr12 9661228 9662172 -111595358 + L1Md_A LINE L1 5639 6582 0 2 658 204 97 0 0 chr12 9662566 9662597 -111594933 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 658 22 56 0 0 chr12 9665336 9665372 -111592158 + AT_rich Low_complexity Low_complexity 1 36 0 2 658 404 343 75 6 chr12 9665706 9665879 -111591651 + B4A SINE B4 87 271 -21 2 658 6817 72 26 11 chr12 9667853 9668899 -111588631 - L1_Mus2 LINE L1 0 6566 5501 2 658 323 259 196 17 chr12 9670305 9670492 -111587038 + MIR SINE MIR 2 211 -57 2 658 523 234 57 31 chr12 9670720 9670879 -111586651 - Lx5 LINE L1 -3 7047 6885 2 658 1782 283 138 32 chr12 9670997 9671582 -111585948 - Lx8 LINE L1 -2 7471 6859 2 658 501 32 0 0 chr12 9671582 9671645 -111585885 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 658 1782 283 138 32 chr12 9671645 9671865 -111585665 - Lx8 LINE L1 -615 6858 6581 2 658 4182 80 0 2 chr12 9671866 9672453 -111585077 + L1_Mm LINE L1 4599 5184 -699 2 658 32444 67 5 16 chr12 9672460 9677838 -111579692 + L1Md_A LINE L1 273 5586 -297 2 658 8204 46 0 0 chr12 9677838 9678834 -111578696 + L1Md_A LINE L1 5587 6582 0 2 658 228 0 0 0 chr12 9679100 9679127 -111578403 - L1_Mm LINE L1 -4501 1382 1356 2 658 1305 129 124 0 chr12 9679121 9679354 -111578176 + L1_Mus2 LINE L1 6305 6566 0 2 658 2981 81 2 8 chr12 9679400 9679798 -111577732 + MTA_Mm LTR MaLR 1 396 0 2 658 4206 210 28 30 chr12 9679834 9680800 -111576730 + Lx5 LINE L1 5946 6909 -141 2 658 234 0 0 0 chr12 9680877 9680903 -111576627 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 658 724 331 16 0 chr12 9680924 9681108 -111576422 - B3 SINE B2 -25 191 5 2 658 21 71 0 0 chr12 9681609 9681651 -111575879 + AT_rich Low_complexity Low_complexity 1 42 0 2 658 245 301 50 36 chr12 9682443 9682622 -111574908 - L1MB8 LINE L1 -10 6174 5994 2 658 1099 62 14 14 chr12 9683280 9683291 -111574239 - B1_Mus2 SINE Alu 0 147 135 2 658 273 20 39 39 chr12 9683291 9683342 -111574188 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 2 658 1099 62 14 14 chr12 9683342 9683476 -111574054 - B1_Mus2 SINE Alu -13 134 2 2 658 213 39 0 0 chr12 9683879 9683905 -111573625 + (T)n Simple_repeat Simple_repeat 1 26 0 2 658 36220 32 0 0 chr12 9683979 9690509 -111567021 - L1Md_T LINE L1 0 6585 1 2 658 495 0 0 0 chr12 9691984 9692039 -111565491 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 2 658 791 159 7 0 chr12 9692039 9692190 -111565340 + CT-rich Low_complexity Low_complexity 1 152 0 2 658 182 333 0 0 chr12 9692635 9692689 -111564841 + MIR SINE MIR 84 137 -71 2 658 923 318 46 55 chr12 9693210 9693669 -111563861 - Lx8 LINE L1 -364 7109 6655 2 658 473 338 40 15 chr12 9695271 9695469 -111562061 - MIR SINE MIR -11 251 49 2 658 243 324 129 14 chr12 9696023 9696170 -111561360 + MIR3 SINE MIR 36 199 -9 2 658 235 161 0 0 chr12 9696864 9696920 -111560610 - Lx4B LINE L1 -981 6077 6022 2 658 4925 35 0 0 chr12 9696920 9697494 -111560036 - L1Md_T LINE L1 0 6582 6009 2 658 8065 14 2 0 chr12 9697494 9698564 -111558966 + L1Md_T LINE L1 4925 6001 -581 2 658 2893 128 53 5 chr12 9698558 9699198 -111558332 - Lx4B LINE L1 -1021 6037 5365 2 82 1637 151 145 44 chr12 9699199 9699586 -111557944 + Lx4B LINE L1 6576 7001 -57 2 659 1008 25 0 0 chr12 9699588 9699707 -111557823 + (GA)n Simple_repeat Simple_repeat 1 119 0 2 659 1067 186 110 24 chr12 9699720 9699974 -111557556 - RMER1B Other Other -357 709 434 2 659 1489 183 95 15 chr12 9699971 9700309 -111557221 + RMER1A Other Other 654 1018 -12 2 659 375 133 18 37 chr12 9700309 9700418 -111557112 + GA-rich Low_complexity Low_complexity 2 108 0 2 659 1239 72 0 0 chr12 9700418 9700598 -111556932 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 659 793 204 123 5 chr12 9700602 9700789 -111556741 + MTC LTR MaLR 212 420 -1 2 659 508 290 8 15 chr12 9701665 9701798 -111555732 + B1_Mur2 SINE Alu 2 133 -16 2 659 27 29 0 0 chr12 9701799 9701833 -111555697 + AT_rich Low_complexity Low_complexity 1 34 0 2 659 465 103 0 0 chr12 9702761 9702829 -111554701 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 659 182 94 62 0 chr12 9703533 9703565 -111553965 - L3b LINE CR1 -254 228 195 2 659 260 264 49 55 chr12 9703754 9703901 -111553629 - L1M5 LINE L1 -644 5480 5333 2 659 3249 72 2 16 chr12 9703901 9704352 -111553178 - L1Md_F2 LINE L1 0 6582 6138 2 659 260 264 49 55 chr12 9704352 9704368 -111553162 - L1M5 LINE L1 -792 5332 5318 2 659 779 181 141 11 chr12 9704425 9704609 -111552921 - B3 SINE B2 -7 209 2 2 659 372 288 84 8 chr12 9704684 9704803 -111552727 - MER5A1 DNA MER1_type -38 128 1 2 659 2894 42 0 6 chr12 9704993 9705349 -111552181 - L1Md_F2 LINE L1 -12 6570 6217 2 659 836 161 0 54 chr12 9705349 9705533 -111551997 - L1VL1 LINE L1 -6214 208 35 2 659 362 331 96 0 chr12 9705948 9706084 -111551446 + MLT1J1 LTR MaLR 7 155 -289 2 659 1074 292 48 55 chr12 9706128 9706602 -111550928 - Lx8 LINE L1 -13 7460 6990 2 659 30676 40 0 1 chr12 9707097 9711059 -111546471 + L1Md_T LINE L1 1627 5586 -297 2 659 8433 34 0 2 chr12 9711059 9712057 -111545473 + L1Md_T LINE L1 5587 6582 0 2 659 858 301 29 13 chr12 9712067 9712377 -111545153 + Lx8 LINE L1 6906 7220 -253 2 659 1053 262 36 42 chr12 9712396 9712729 -111544801 + MTD LTR MaLR 18 362 -38 2 659 2999 32 0 0 chr12 9712729 9713075 -111544455 + ORR1A0 LTR MaLR 1 346 0 2 659 237 328 54 39 chr12 9713075 9713107 -111544423 + MTD LTR MaLR 325 356 -3 2 659 440 302 82 23 chr12 9713107 9713327 -111544203 + Lx8 LINE L1 7233 7465 -8 2 659 29 0 0 0 chr12 9713352 9713381 -111544149 + AT_rich Low_complexity Low_complexity 1 29 0 2 659 25 0 0 0 chr12 9714326 9714351 -111543179 + AT_rich Low_complexity Low_complexity 1 25 0 2 659 226 331 17 17 chr12 9714447 9714619 -111542911 - Lx9 LINE L1 -147 7497 7326 2 659 1065 200 22 18 chr12 9716003 9716227 -111541303 + URR1B DNA MER1_type 1 225 0 2 659 327 277 138 0 chr12 9717481 9717575 -111539955 + ID_B1 SINE B4 82 188 -36 2 659 226 313 105 35 chr12 9717600 9717774 -111539756 + MIRb SINE MIR 79 261 -1 2 659 587 239 84 17 chr12 9718007 9718186 -111539344 - Lx4B LINE L1 0 7058 6868 2 659 923 246 4 4 chr12 9718176 9718401 -111539129 + Lx4B LINE L1 6552 6776 -282 2 659 510 17 0 0 chr12 9718964 9719023 -111538507 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 2 659 6508 73 7 0 chr12 9719827 9720774 -111536756 - L1Md_F2 LINE L1 -654 5928 4973 2 659 4963 70 1 31 chr12 9720774 9721456 -111536074 + L1Md_F2 LINE L1 5918 6579 -3 2 659 10623 133 25 43 chr12 9721581 9723468 -111534062 - L1_Mus3 LINE L1 -7 6631 4745 2 659 865 108 15 0 chr12 9723468 9723598 -111533932 - B1_Mus2 SINE Alu 0 147 16 2 659 10623 133 25 43 chr12 9723598 9723616 -111533914 - L1_Mus3 LINE L1 -7 4744 4726 2 659 232 27 26 26 chr12 9723616 9723654 -111533876 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2 659 10623 171 5 82 chr12 9723654 9724814 -111532716 - L1_Mus3 LINE L1 -1152 4725 3576 2 659 6364 88 0 0 chr12 9724818 9725708 -111531822 - L1_Mus2 LINE L1 0 6566 5677 2 659 1421 92 18 5 chr12 9725703 9725922 -111531608 - L1_Mus3 LINE L1 -746 5892 5671 2 659 1710 37 0 0 chr12 9725922 9726138 -111531392 + L1_Mus3 LINE L1 5676 5891 -747 2 659 422 88 0 0 chr12 9726142 9726199 -111531331 - L1Md_F2 LINE L1 -464 6118 6062 2 659 7295 45 1 0 chr12 9726201 9727084 -111530446 + L1Md_F2 LINE L1 5686 6569 -13 2 659 1051 104 0 13 chr12 9727090 9727245 -111530285 - L1_Mus3 LINE L1 -200 5683 5531 2 659 2402 113 29 10 chr12 9727243 9727983 -111529547 - L1VL4 LINE L1 -2245 1572 842 2 659 1174 55 14 0 chr12 9727983 9728128 -111529402 - B1_Mus1 SINE Alu 0 148 2 2 659 1393 274 8 65 chr12 9728128 9728617 -111528913 - L1VL4 LINE L1 -5691 869 390 2 659 6365 112 8 0 chr12 9728789 9730196 -111527334 - L1_Mus3 LINE L1 -158 6480 5060 2 659 1068 86 12 6 chr12 9730202 9730365 -111527165 + L1_Mus3 LINE L1 6475 6638 0 2 659 396 337 48 29 chr12 9731252 9731460 -111526070 + LTR90B LTR LTR 4 215 -581 2 659 202 333 0 0 chr12 9731710 9731764 -111525766 + polypyrimidine Low_complexity Low_complexity 1 54 0 2 659 29 28 0 0 chr12 9731917 9731953 -111525577 + AT_rich Low_complexity Low_complexity 1 36 0 2 659 242 338 0 13 chr12 9732093 9732171 -111525359 - L2b LINE L2 -80 3295 3219 2 659 521 301 47 29 chr12 9732499 9732670 -111524860 + B3 SINE B2 36 209 -7 2 659 651 211 62 0 chr12 9733083 9733211 -111524319 + B1_Mur2 SINE Alu 2 137 -12 2 659 510 124 0 0 chr12 9733238 9733327 -111524203 + (CA)n Simple_repeat Simple_repeat 1 89 0 2 659 1248 58 0 34 chr12 9733533 9733710 -111523820 + L1_Mus1 LINE L1 6397 6567 0 2 659 287 0 53 0 chr12 9733823 9733861 -111523669 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 659 531 0 0 0 chr12 9734518 9734577 -111522953 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 659 288 70 0 0 chr12 9735557 9735600 -111521930 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 659 1668 135 83 13 chr12 9736078 9736379 -111521151 - IAPLTR4 LTR ERVK -21 324 3 2 659 512 308 62 70 chr12 9736850 9737122 -111520408 + B4A SINE B4 9 278 -14 2 659 1204 85 6 0 chr12 9737181 9737346 -111520184 + B2_Mm1a SINE B2 1 166 -27 2 659 607 91 20 10 chr12 9737346 9737446 -111520084 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 2 659 25 31 0 0 chr12 9737638 9737670 -111519860 + AT_rich Low_complexity Low_complexity 1 32 0 2 659 225 253 151 81 chr12 9738531 9738716 -111518814 - MIR3 SINE MIR -6 202 5 2 659 312 256 322 38 chr12 9739749 9739981 -111517549 - MLT1H2 LTR MaLR 0 489 192 2 659 495 315 43 6 chr12 9741388 9741551 -111515979 - MLT1C LTR MaLR 0 467 299 2 659 258 219 40 40 chr12 9741608 9741684 -111515846 - MLT1C LTR MaLR -280 225 150 2 659 478 296 17 0 chr12 9741671 9741786 -111515744 - B4 SINE B4 -16 276 160 2 659 3132 41 3 0 chr12 9741794 9742186 -111515344 + L1_Mm LINE L1 5431 5823 -60 2 659 693 253 6 12 chr12 9742184 9742356 -111515174 - Lx8 LINE L1 -456 7017 6847 2 659 243 122 0 0 chr12 9742740 9742789 -111514741 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 659 309 172 0 0 chr12 9743287 9743351 -111514179 + GA-rich Low_complexity Low_complexity 2 65 0 2 659 1100 66 0 0 chr12 9744538 9744674 -111512856 + B1_Mus2 SINE Alu 3 138 -9 2 659 330 26 0 0 chr12 9744674 9744713 -111512817 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 659 6620 49 2 3 chr12 9744866 9745725 -111511805 - L1Md_F2 LINE L1 -12 6570 5713 3 659 2457 54 0 0 chr12 9745724 9746037 -111511493 + L1Md_F2 LINE L1 5409 5721 -162 3 659 573 88 0 0 chr12 9747395 9747475 -111510055 + (TAA)n Simple_repeat Simple_repeat 2 81 0 3 659 195 310 69 0 chr12 9749638 9749696 -111507834 + MIR SINE MIR 31 92 -116 3 659 973 117 58 0 chr12 9749813 9749967 -111507563 - URR1A DNA MER1_type -3 223 61 3 659 924 315 81 3 chr12 9751817 9752139 -111505391 - ORR1E LTR MaLR -8 351 5 3 659 396 227 112 59 chr12 9752362 9752549 -111504981 - Lx5 LINE L1 0 7050 6854 3 659 27 29 0 0 chr12 9752993 9753027 -111504503 + AT_rich Low_complexity Low_complexity 1 34 0 3 659 24 32 0 0 chr12 9753110 9753141 -111504389 + AT_rich Low_complexity Low_complexity 1 31 0 3 659 55 56 0 0 chr12 9754985 9755075 -111502455 + AT_rich Low_complexity Low_complexity 1 90 0 3 659 679 279 17 45 chr12 9756098 9756518 -111501012 + L1MA4A LINE L1 5493 5891 -412 3 659 186 43 0 0 chr12 9756521 9756544 -111500986 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 659 481 230 11 0 chr12 9758534 9758712 -111498818 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 659 263 146 18 0 chr12 9758740 9758795 -111498735 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 659 823 286 49 119 chr12 9759523 9759809 -111497721 + B4 SINE B4 5 270 -22 3 659 230 198 101 73 chr12 9759883 9759928 -111497602 + RLTR40 LTR ERVK 569 612 -205 3 659 1074 90 0 0 chr12 9759928 9760106 -111497424 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 659 230 198 101 73 chr12 9760106 9760169 -111497361 + RLTR40 LTR ERVK 613 680 -137 3 659 346 374 102 34 chr12 9760763 9761029 -111496501 - MLT1H LTR MaLR -252 297 14 3 659 486 315 33 22 chr12 9761254 9761436 -111496094 - B4 SINE B4 -108 184 1 3 659 231 315 102 63 chr12 9761444 9761698 -111495832 - Charlie18a DNA MER1_type -78 264 1 3 659 181 333 0 37 chr12 9762119 9762200 -111495330 + MIRb SINE MIR 176 253 -15 3 659 191 36 0 35 chr12 9762360 9762389 -111495141 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 3 659 397 257 2 21 chr12 9762389 9762497 -111495033 + B1_Mur1 SINE Alu 42 149 0 3 659 730 193 69 10 chr12 9762518 9762743 -111494787 - Lx9 LINE L1 -1714 5930 5658 3 659 894 175 6 0 chr12 9762742 9762913 -111494617 + Lx9 LINE L1 7304 7475 -169 3 659 433 133 11 11 chr12 9762925 9763016 -111494514 + Lx9 LINE L1 7522 7612 -32 3 659 876 121 0 0 chr12 9763154 9763362 -111494168 + (GA)n Simple_repeat Simple_repeat 1 208 0 3 659 1290 65 0 0 chr12 9763785 9763954 -111493576 + (GA)n Simple_repeat Simple_repeat 2 170 0 3 659 405 0 0 0 chr12 9765096 9765141 -111492389 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 659 577 338 118 80 chr12 9765393 9765908 -111491622 + MLT1F2 LTR MaLR 5 539 -21 3 659 625 259 89 54 chr12 9765921 9766306 -111491224 - MLT2D LTR ERVL 0 464 62 3 659 209 119 24 0 chr12 9767167 9767209 -111490321 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 659 248 407 28 0 chr12 9768955 9769100 -111488430 + MIRb SINE MIR 20 168 -100 3 659 363 327 35 0 chr12 9769986 9770099 -111487431 - PB1D10 SINE Alu 0 117 1 3 659 581 268 51 0 chr12 9770147 9770285 -111487245 - ID_B1 SINE B4 -2 222 78 3 659 219 23 93 0 chr12 9771267 9771310 -111486220 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 3 659 260 148 0 18 chr12 9771509 9771523 -111486007 + polypyrimidine Low_complexity Low_complexity 46 59 0 3 659 1107 90 6 17 chr12 9771523 9771704 -111485826 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 3 659 260 148 0 18 chr12 9771704 9771744 -111485786 + polypyrimidine Low_complexity Low_complexity 7 45 0 3 659 361 314 138 40 chr12 9772210 9772485 -111485045 + RMER20B LTR ERVK 90 391 -236 3 659 944 261 45 5 chr12 9775070 9775293 -111482237 + MTD LTR MaLR 1 232 -187 3 659 900 65 0 0 chr12 9779109 9779233 -111478297 + (TG)n Simple_repeat Simple_repeat 1 124 0 3 659 459 52 0 0 chr12 9780073 9780131 -111477399 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 3 659 898 142 0 0 chr12 9780623 9780771 -111476759 - L1_Mus2 LINE L1 0 6566 6419 3 659 11283 78 42 8 chr12 9780774 9781395 -111476135 + ORR1A1-int LTR MaLR 92 776 -1016 3 659 6024 57 53 0 chr12 9781395 9782162 -111475368 - RLTR13C2 LTR ERVK 0 808 1 3 659 11283 78 42 8 chr12 9782162 9783185 -111474345 + ORR1A1-int LTR MaLR 777 1792 0 3 659 1651 45 401 0 chr12 9783185 9783432 -111474098 + ORR1A1 LTR MaLR 1 346 0 3 659 4684 78 32 6 chr12 9783432 9784401 -111473129 - L1_Mus2 LINE L1 -285 6281 5287 3 659 7418 86 3 3 chr12 9784394 9786229 -111471301 - L1_Mus1 LINE L1 0 6567 4732 3 659 29305 105 7 10 chr12 9786224 9789071 -111468459 - L1Md_F2 LINE L1 -3 6579 3742 3 659 3146 63 2 2 chr12 9789071 9789467 -111468063 + MTA_Mm LTR MaLR 1 396 0 3 659 29305 106 5 12 chr12 9789467 9791502 -111466028 - L1Md_F2 LINE L1 -2142 3741 1715 3 659 1657 26 0 0 chr12 9791502 9791691 -111465839 - B2_Mm1a SINE B2 -4 189 1 3 659 29305 140 29 42 chr12 9791691 9792897 -111464633 - L1Md_F2 LINE L1 -4169 1714 536 3 659 912 146 11 6 chr12 9792913 9793092 -111464438 + CT-rich Low_complexity Low_complexity 1 180 0 3 659 380 111 16 0 chr12 9793100 9793163 -111464367 + (TCC)n Simple_repeat Simple_repeat 2 65 0 3 659 696 56 0 0 chr12 9793514 9793603 -111463927 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 3 659 25 0 0 0 chr12 9793638 9793663 -111463867 + AT_rich Low_complexity Low_complexity 1 25 0 3 659 32 0 0 0 chr12 9793777 9793809 -111463721 + AT_rich Low_complexity Low_complexity 1 32 0 3 659 795 304 102 14 chr12 9793849 9794269 -111463261 - L1MC1 LINE L1 -19 6314 5858 3 659 27 49 0 0 chr12 9794418 9794459 -111463071 + AT_rich Low_complexity Low_complexity 1 41 0 3 659 389 271 51 103 chr12 9794555 9794769 -111462761 - L1MCa LINE L1 -2061 4260 4058 3 659 250 125 68 27 chr12 9794840 9794914 -111462616 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 659 1505 256 132 67 chr12 9794917 9795742 -111461788 - L1MCa LINE L1 -2286 4035 3108 3 659 486 320 6 17 chr12 9795742 9795920 -111461610 + B3A SINE B2 5 180 -18 3 659 1505 256 132 67 chr12 9795920 9796310 -111461220 - L1MCa LINE L1 -3214 3107 2741 3 659 1590 213 31 36 chr12 9796317 9796673 -111460857 - ORR1B1 LTR MaLR 0 394 41 3 659 651 280 82 25 chr12 9796710 9797125 -111460405 - L1MCa LINE L1 -3617 2704 2258 3 659 222 37 0 0 chr12 9797125 9797152 -111460378 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 3 659 430 264 81 44 chr12 9797152 9797269 -111460261 - L1MCa LINE L1 -4251 2257 2151 3 659 1037 270 5 5 chr12 9797307 9797523 -111460007 - B3 SINE B2 0 216 1 3 659 925 281 115 45 chr12 9797562 9798619 -111458911 - L1MCa LINE L1 -4384 2124 993 3 659 1145 180 88 16 chr12 9798617 9798866 -111458664 - Lx4A LINE L1 -28 7030 6764 3 659 1674 151 0 23 chr12 9798856 9799162 -111458368 + Lx4A LINE L1 5924 6222 -836 3 659 23 0 0 0 chr12 9799363 9799386 -111458144 + AT_rich Low_complexity Low_complexity 1 23 0 3 659 572 283 152 24 chr12 9799386 9799725 -111457805 - Lx6 LINE L1 -26 7434 7053 3 659 554 313 115 7 chr12 9799797 9800083 -111457447 - Lx8 LINE L1 -149 7324 7008 3 659 195 326 19 78 chr12 9800246 9800349 -111457181 - MIR3 SINE MIR -46 162 66 3 659 360 0 0 0 chr12 9800351 9800391 -111457139 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 659 918 161 172 0 chr12 9800681 9800873 -111456657 - URR1B DNA MER1_type 0 225 1 3 659 554 183 17 17 chr12 9801014 9801131 -111456399 + Lx8 LINE L1 7039 7155 -318 3 659 666 0 0 0 chr12 9801138 9801212 -111456318 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 659 994 245 114 17 chr12 9801467 9801766 -111455764 - Lx8 LINE L1 -414 7059 6732 3 659 28 71 0 0 chr12 9801820 9801876 -111455654 + AT_rich Low_complexity Low_complexity 1 56 0 3 659 390 255 12 58 chr12 9801879 9802050 -111455480 + Lx9 LINE L1 7475 7637 -7 3 659 365 298 6 53 chr12 9802132 9802475 -111455055 + GA-rich Low_complexity Low_complexity 1 326 0 3 659 1448 308 33 19 chr12 9802538 9803078 -111454452 + Lx8 LINE L1 6207 6754 -719 3 659 425 280 107 42 chr12 9804700 9804868 -111452662 + MTEa LTR MaLR 1 179 -200 3 659 315 275 26 31 chr12 9804908 9805021 -111452509 + MTEa LTR MaLR 241 354 -5 3 659 281 361 148 0 chr12 9806578 9806761 -111450769 - MIRb SINE MIR -14 254 45 3 659 774 163 0 0 chr12 9808044 9808185 -111449345 + (TA)n Simple_repeat Simple_repeat 2 142 0 3 659 400 345 21 14 chr12 9808326 9808467 -111449063 + B4A SINE B4 95 236 -56 3 659 356 227 64 19 chr12 9808631 9808788 -111448742 + (CA)n Simple_repeat Simple_repeat 1 164 0 3 659 297 0 0 0 chr12 9808794 9808827 -111448703 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 659 468 0 0 0 chr12 9809831 9809883 -111447647 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 659 534 405 13 4 chr12 9809896 9810134 -111447396 - B4A SINE B4 -9 283 44 3 659 348 301 130 0 chr12 9810186 9810309 -111447221 + L1M5 LINE L1 2779 2917 -3229 3 659 432 305 0 0 chr12 9810315 9810410 -111447120 + RSINE1 SINE B4 1 95 -70 3 659 468 0 0 0 chr12 9810461 9810513 -111447017 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 659 353 259 107 20 chr12 9810628 9810872 -111446658 + L1MD LINE L1 2995 3259 -2887 3 659 2127 120 0 0 chr12 9810878 9811202 -111446328 - L1_Mus3 LINE L1 -276 6362 6039 3 659 1702 89 8 20 chr12 9811202 9811455 -111446075 + L1_Mus3 LINE L1 6389 6638 0 3 659 233 325 62 22 chr12 9811502 9811826 -111445704 + L1MC LINE L1 3377 3713 -2433 3 659 389 386 68 39 chr12 9811934 9812376 -111445154 + L1M5 LINE L1 3783 4237 -1909 3 659 1935 124 13 16 chr12 9812410 9812714 -111444816 - RLTR27 LTR ERVK 0 309 7 3 659 312 282 76 61 chr12 9812784 9813112 -111444418 + L1M5 LINE L1 4316 4648 -1498 3 659 216 241 19 0 chr12 9813112 9813166 -111444364 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 659 481 363 0 0 chr12 9813306 9813452 -111444078 + B4 SINE B4 145 290 -2 3 659 730 297 112 28 chr12 9813536 9814007 -111443523 + L1MC1 LINE L1 5717 6227 -106 3 659 205 351 78 9 chr12 9814339 9814454 -111443076 + MIRc SINE MIR 24 146 -122 3 659 22 35 0 0 chr12 9815246 9815275 -111442255 + AT_rich Low_complexity Low_complexity 1 29 0 3 659 1109 59 0 0 chr12 9816026 9816162 -111441368 - B1_Mus1 SINE Alu -8 140 5 3 659 250 282 23 17 chr12 9817829 9817934 -111439596 + Lx8 LINE L1 7142 7235 -238 3 659 1683 307 35 33 chr12 9817957 9818691 -111438839 - Lx7 LINE L1 -584 7112 6377 3 659 218 39 0 0 chr12 9819641 9819667 -111437863 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 3 659 948 178 0 0 chr12 9819667 9819847 -111437683 + CT-rich Low_complexity Low_complexity 1 180 0 3 659 288 0 0 0 chr12 9819847 9819879 -111437651 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 659 231 103 0 94 chr12 9820208 9820272 -111437258 + (TTA)n Simple_repeat Simple_repeat 1 58 0 4 659 22 0 0 0 chr12 9821694 9821716 -111435814 + AT_rich Low_complexity Low_complexity 1 22 0 4 659 24477 99 41 76 chr12 9821718 9826544 -111430986 - L1_Mus3 LINE L1 -7 6631 2062 4 659 4971 38 0 0 chr12 9826544 9827130 -111430400 - L1Md_T LINE L1 -1 6581 5996 4 659 24477 102 26 94 chr12 9827130 9827771 -111429759 - L1_Mus3 LINE L1 -3822 2061 1409 4 659 750 80 0 0 chr12 9827755 9827867 -111429663 - L1Md_F2 LINE L1 -18 6564 6453 4 659 5391 107 34 14 chr12 9827862 9828887 -111428643 - L1VL1 LINE L1 -2460 1238 193 4 659 258 176 0 0 chr12 9829035 9829086 -111428444 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 82 24902 129 17 11 chr12 9830294 9834680 -111422850 + L1_Mus1 LINE L1 98 4431 -1452 4 660 1025 120 0 0 chr12 9834680 9834822 -111422708 + B1_Mus2 SINE Alu 1 142 -5 4 660 234 0 0 0 chr12 9834824 9834850 -111422680 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 660 24902 100 7 5 chr12 9834850 9836987 -111420543 + L1_Mus1 LINE L1 4432 6567 0 4 660 318 280 8 8 chr12 9837325 9837451 -111420079 - L1M2 LINE L1 -900 5243 5118 4 660 810 322 85 54 chr12 9837544 9837632 -111419898 - L1_Mur3 LINE L1 -2238 3642 3561 4 660 3140 31 2 80 chr12 9837632 9838055 -111419475 - RLTR10 LTR ERVK 0 390 1 4 660 810 322 85 54 chr12 9838055 9838131 -111419399 - L1_Mur3 LINE L1 -2320 3560 3485 4 660 654 13 0 0 chr12 9838131 9838206 -111419324 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 660 810 322 85 54 chr12 9838206 9839560 -111417970 - L1_Mur3 LINE L1 -2396 3484 2078 4 660 363 326 40 25 chr12 9839603 9839801 -111417729 - L1MEg LINE L1 -4586 1498 1298 4 660 1191 265 16 51 chr12 9840196 9840566 -111416964 + ORR1E LTR MaLR 1 357 -2 4 660 3489 30 0 128 chr12 9841282 9841782 -111415748 - RLTR10C LTR ERVK 0 436 1 4 660 321 345 35 24 chr12 9842528 9842697 -111414833 + L1_Rod LINE L1 5375 5596 -701 4 660 3466 18 5 0 chr12 9842905 9843299 -111414231 - MTA_Mm LTR MaLR 0 396 1 4 660 460 269 78 48 chr12 9843300 9843561 -111413969 + Lx7 LINE L1 5592 5850 -1126 4 660 774 354 79 17 chr12 9843979 9844560 -111412970 + Lx8 LINE L1 6583 7199 -274 4 660 3206 123 65 10 chr12 9844573 9845082 -111412448 + Lx3C LINE L1 6438 6974 -2 4 660 22 0 0 0 chr12 9845371 9845393 -111412137 + AT_rich Low_complexity Low_complexity 1 22 0 4 660 252 331 66 46 chr12 9845508 9845660 -111411870 - L4 LINE RTE -384 1645 1491 4 660 219 114 0 0 chr12 9847742 9847777 -111409753 + (CTG)n Simple_repeat Simple_repeat 2 36 0 4 660 569 192 0 10 chr12 9847930 9848030 -111409500 + B1_Mus2 SINE Alu 47 145 -2 4 660 489 231 0 0 chr12 9848032 9848153 -111409377 + (TA)n Simple_repeat Simple_repeat 1 121 0 4 660 308 342 20 20 chr12 9848828 9848977 -111408553 - MamRep1161 DNA TcMar -808 149 1 4 660 300 111 0 0 chr12 9849820 9849865 -111407665 + (T)n Simple_repeat Simple_repeat 1 45 0 4 660 264 178 54 14 chr12 9849904 9849978 -111407552 + L1M6 LINE L1 53 129 -6367 4 660 303 335 107 6 chr12 9850716 9850893 -111406637 + MIRb SINE MIR 38 232 -36 4 660 28 71 0 0 chr12 9851294 9851350 -111406180 + AT_rich Low_complexity Low_complexity 1 56 0 4 660 4846 127 29 70 chr12 9851545 9851695 -111405835 - L1_Mur2 LINE L1 -3646 2231 2073 4 660 186 43 0 0 chr12 9851695 9851718 -111405812 + (TGG)n Simple_repeat Simple_repeat 1 23 0 4 660 4846 130 31 42 chr12 9851718 9853274 -111404256 - L1_Mur2 LINE L1 -3805 2072 544 4 660 543 296 22 36 chr12 9853571 9853765 -111403765 - B3 SINE B2 -7 186 1 4 660 306 0 0 0 chr12 9854314 9854348 -111403182 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 660 354 61 0 0 chr12 9854604 9854653 -111402877 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 660 526 266 48 25 chr12 9855521 9855774 -111401756 + Lx8 LINE L1 5635 5910 -1140 4 660 1652 298 32 8 chr12 9856267 9856792 -111400738 + Lx8 LINE L1 6307 6844 -629 4 660 279 79 0 0 chr12 9856920 9856958 -111400572 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 4 660 451 107 24 0 chr12 9859213 9859297 -111398233 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 660 204 158 26 0 chr12 9859955 9859993 -111397537 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 4 660 210 291 81 11 chr12 9861525 9861542 -111395988 - B4A SINE B4 -199 93 1 4 660 254 300 57 0 chr12 9861542 9861612 -111395918 - ID4 SINE ID -9 74 1 4 660 297 0 0 0 chr12 9863261 9863294 -111394236 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 660 720 294 0 58 chr12 9863443 9863616 -111393914 + RSINE1 SINE B4 3 165 0 4 660 249 98 0 0 chr12 9863629 9863670 -111393860 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 660 382 337 33 82 chr12 9864413 9864597 -111392933 - B3A SINE B2 -20 178 4 4 660 596 286 89 17 chr12 9865971 9866206 -111391324 - MLT1A0 LTR MaLR 0 365 114 4 660 527 267 65 67 chr12 9866263 9866756 -111390774 - L1M2 LINE L1 -968 5175 4684 4 660 898 302 118 51 chr12 9866777 9867754 -111389776 + L1MA6 LINE L1 5258 6299 -1 4 660 2797 100 17 2 chr12 9868266 9868668 -111388862 - Lx3A LINE L1 -5 6976 6569 4 660 485 32 16 0 chr12 9870797 9870860 -111386670 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 4 660 5050 104 18 73 chr12 9871039 9871898 -111385632 + L1_Mus4 LINE L1 5826 6636 0 4 660 514 210 30 0 chr12 9872156 9872256 -111385274 - U6 snRNA snRNA -4 103 1 4 660 23 0 0 0 chr12 9872262 9872285 -111385245 + AT_rich Low_complexity Low_complexity 1 23 0 4 660 4013 105 37 7 chr12 9872850 9873446 -111384084 + Lx3B LINE L1 6359 6972 -1 4 660 3174 131 18 30 chr12 9873704 9873992 -111383538 - L1_Mur1 LINE L1 -356 5530 5238 4 660 464 0 18 0 chr12 9873992 9874048 -111383482 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 660 3174 131 18 30 chr12 9874048 9874382 -111383148 - L1_Mur1 LINE L1 -649 5237 4916 4 660 6367 167 35 13 chr12 9874385 9875790 -111381740 + Lx3C LINE L1 5534 6973 -3 4 660 4354 67 72 0 chr12 9875969 9876188 -111381342 - L1_Mus2 LINE L1 0 6566 6347 4 660 216 0 0 0 chr12 9876188 9876212 -111381318 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 660 4354 67 72 0 chr12 9876212 9876571 -111380959 - L1_Mus2 LINE L1 -220 6346 5947 4 660 1466 42 0 0 chr12 9876572 9876761 -111380769 + L1_Mus2 LINE L1 5750 5938 -628 4 660 573 124 35 9 chr12 9876981 9877095 -111380435 + GA-rich Low_complexity Low_complexity 3 119 0 4 660 393 354 43 48 chr12 9878028 9878236 -111379294 + MER20 DNA MER1_type 1 207 -12 4 660 207 329 51 0 chr12 9880200 9880279 -111377251 - MIR SINE MIR -96 166 84 4 660 369 0 0 0 chr12 9880342 9880383 -111377147 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 660 246 32 0 0 chr12 9880382 9880413 -111377117 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 660 189 0 0 0 chr12 9880413 9880434 -111377096 + (TCTCCC)n Simple_repeat Simple_repeat 5 25 0 4 660 387 307 86 0 chr12 9880434 9880574 -111376956 - HAL1-3A_ME LINE L1 -419 2439 2288 4 660 212 324 14 0 chr12 9880576 9880650 -111376880 + CT-rich Low_complexity Low_complexity 2 76 0 4 660 515 296 8 0 chr12 9880963 9881088 -111376442 - B1F SINE Alu -10 139 14 4 660 461 38 37 12 chr12 9881112 9881193 -111376337 + (TTTTTG)n Simple_repeat Simple_repeat 2 84 0 4 660 1039 51 80 0 chr12 9881197 9881334 -111376196 - B1_Mus1 SINE Alu 0 148 1 4 660 967 86 28 21 chr12 9881507 9881650 -111375880 + B1_Mm SINE Alu 1 144 -3 4 660 689 34 11 0 chr12 9881661 9881749 -111375781 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 660 690 343 0 6 chr12 9881828 9882001 -111375529 + B4 SINE B4 1 172 -120 4 660 232 409 0 0 chr12 9882097 9882273 -111375257 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 660 1154 26 7 26 chr12 9882615 9882770 -111374760 - L1Md_A LINE L1 -1 6581 6430 4 660 22 0 0 0 chr12 9883653 9883675 -111373855 + AT_rich Low_complexity Low_complexity 1 22 0 4 660 283 309 40 0 chr12 9883678 9883804 -111373726 + Arthur1 DNA Tip100 3038 3168 -779 4 660 567 290 94 10 chr12 9883890 9884092 -111373438 - MER2 DNA MER2_type 0 345 127 4 660 1294 253 47 21 chr12 9885357 9885740 -111371790 - Lx8 LINE L1 -821 6652 6260 4 660 492 106 0 0 chr12 9885767 9885852 -111371678 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 4 660 231 270 53 26 chr12 9886320 9886396 -111371134 - Lx9 LINE L1 -1731 5913 5836 4 660 1520 268 122 35 chr12 9886400 9887023 -111370507 + Lx8 LINE L1 6656 7332 -141 4 660 450 0 0 0 chr12 9888638 9888688 -111368842 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 660 384 317 196 9 chr12 9889444 9889673 -111367857 - MLT1C LTR MaLR 0 467 196 4 660 189 0 0 0 chr12 9890560 9890581 -111366949 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 660 321 26 0 0 chr12 9891546 9891584 -111365946 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 660 2028 260 87 21 chr12 9891587 9892333 -111365197 - Lx9 LINE L1 -188 7456 6662 4 660 24 0 0 0 chr12 9892976 9893000 -111364530 + AT_rich Low_complexity Low_complexity 1 24 0 4 660 1217 141 5 0 chr12 9893005 9893189 -111364341 + B2_Mm1t SINE B2 1 185 -8 4 660 1174 255 172 0 chr12 9895035 9895408 -111362122 - Lx8 LINE L1 -478 6995 6559 4 660 182 219 0 0 chr12 9896052 9896084 -111361446 + MIR SINE MIR 154 185 -77 4 660 270 0 0 0 chr12 9896169 9896199 -111361331 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 660 570 268 148 0 chr12 9896237 9896379 -111361151 - B3 SINE B2 -27 189 27 4 660 314 326 126 14 chr12 9896466 9896609 -111360921 - HAL1-3A_ME LINE L1 -416 2442 2284 4 660 363 294 33 0 chr12 9896641 9896732 -111360798 - B1F SINE Alu -8 109 19 4 660 11327 85 18 8 chr12 9896981 9899446 -111358084 - L1Md_F LINE L1 -3036 2847 358 4 660 5713 106 14 16 chr12 9899446 9899826 -111357704 + Lx3_Mus LINE L1 6140 6520 -489 4 660 387 0 0 0 chr12 9899826 9899869 -111357661 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 660 5713 106 14 16 chr12 9899869 9900359 -111357171 + Lx3_Mus LINE L1 6521 7008 -1 4 660 21 0 0 0 chr12 9901949 9901970 -111355560 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 4893 55 11 11 chr12 9902000 9902630 -111354900 + L1Md_F2 LINE L1 5953 6582 0 5 660 195 100 0 0 chr12 9903230 9903260 -111354270 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 660 249 33 0 0 chr12 9905673 9905703 -111351827 + (CG)n Simple_repeat Simple_repeat 1 30 0 5 660 402 39 0 0 chr12 9905703 9905754 -111351776 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 660 2742 44 6 8 chr12 9906651 9907012 -111350518 - L1Md_F2 LINE L1 -539 6043 5684 5 660 3611 82 23 21 chr12 9907012 9907524 -111350006 + L1_Mus1 LINE L1 6055 6567 0 5 660 655 299 11 22 chr12 9907524 9907557 -111349973 - L1Md_F2 LINE L1 -1790 5683 5650 5 660 455 281 40 33 chr12 9909712 9909863 -111347667 + ORR1E LTR MaLR 1 152 -207 5 660 1066 143 153 0 chr12 9909880 9910076 -111347454 - URR1A DNA MER1_type 0 226 1 5 660 1260 268 55 64 chr12 9910288 9910501 -111347029 + MLT1C LTR MaLR 1 208 -259 5 660 450 0 0 0 chr12 9910501 9910551 -111346979 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 660 1260 268 55 64 chr12 9910551 9910776 -111346754 + MLT1C LTR MaLR 209 435 -32 5 660 438 20 0 0 chr12 9911103 9911154 -111346376 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 660 187 236 54 18 chr12 9912295 9912351 -111345179 + L4 LINE RTE 1603 1660 -369 5 660 348 279 0 37 chr12 9913039 9913173 -111344357 + L1MA7 LINE L1 6157 6285 -6 5 660 358 246 272 0 chr12 9913661 9913852 -111343678 - Lx9 LINE L1 -8 7636 7394 5 660 1055 276 79 14 chr12 9915337 9915830 -111341700 + L1_Rod LINE L1 5009 5533 -314 5 660 396 267 33 0 chr12 9915913 9916033 -111341497 + Lx7 LINE L1 6843 6966 -730 5 660 188 203 31 0 chr12 9916114 9916178 -111341352 + (TATG)n Simple_repeat Simple_repeat 4 69 0 5 660 335 268 18 35 chr12 9916182 9916352 -111341178 + Lx7 LINE L1 7507 7673 -23 5 660 1752 120 40 0 chr12 9916539 9916813 -111340717 - Lx LINE L1 -3 6651 6367 5 660 369 342 56 15 chr12 9917534 9917793 -111339737 - MER2 DNA MER2_type -58 287 7 5 660 867 146 0 33 chr12 9918869 9919053 -111338477 + CT-rich Low_complexity Low_complexity 3 180 0 5 660 282 193 0 0 chr12 9919070 9919127 -111338403 + C-rich Low_complexity Low_complexity 1 57 0 5 660 702 133 0 0 chr12 9919127 9919240 -111338290 + (TTTC)n Simple_repeat Simple_repeat 2 114 0 5 660 1781 214 17 180 chr12 9919857 9919902 -111337628 - RMER19C LTR ERVK -11 600 565 5 660 2997 69 3 3 chr12 9919902 9920293 -111337237 + L1_Mus1 LINE L1 6176 6566 -1 5 660 1781 214 17 180 chr12 9920293 9920557 -111336973 - RMER19C LTR ERVK -47 564 342 5 660 396 0 0 0 chr12 9920557 9920601 -111336929 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 660 1781 214 17 180 chr12 9920601 9921007 -111336523 - RMER19C LTR ERVK -270 341 1 5 660 321 258 0 0 chr12 9921040 9921106 -111336424 + ID4_ SINE ID 1 66 -17 5 660 426 242 32 32 chr12 9921122 9921246 -111336284 - ORR1D1 LTR MaLR -36 338 215 5 660 753 217 0 0 chr12 9921247 9921427 -111336103 + (CAGG)n Simple_repeat Simple_repeat 1 180 0 5 660 912 169 0 0 chr12 9921449 9921627 -111335903 + (CAGG)n Simple_repeat Simple_repeat 3 180 0 5 660 1165 163 54 54 chr12 9921629 9921643 -111335887 - ORR1D1 LTR MaLR -115 259 247 5 660 1056 133 0 0 chr12 9921643 9921823 -111335707 + (CAGG)n Simple_repeat Simple_repeat 1 180 0 5 660 1165 163 54 54 chr12 9921823 9922067 -111335463 - ORR1D1 LTR MaLR -128 246 1 5 660 369 0 0 0 chr12 9922084 9922125 -111335405 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 660 978 9 0 0 chr12 9922125 9922235 -111335295 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 660 243 0 0 0 chr12 9923139 9923166 -111334364 + (A)n Simple_repeat Simple_repeat 1 27 0 5 660 1155 175 37 0 chr12 9924598 9924815 -111332715 - URR1B DNA MER1_type 0 225 1 5 660 1916 229 71 57 chr12 9925629 9926620 -111330910 - RMER17B LTR ERVK -32 926 1 5 660 198 0 0 0 chr12 9926873 9926895 -111330635 + (TTA)n Simple_repeat Simple_repeat 3 24 0 5 660 198 382 33 11 chr12 9927035 9927125 -111330405 + MIR3 SINE MIR 109 200 -8 5 660 186 43 0 0 chr12 9927830 9927853 -111329677 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 660 334 339 49 70 chr12 9927942 9928436 -111329094 - MLT2B1 LTR ERVL -20 547 114 5 660 1038 298 85 49 chr12 9928452 9928897 -111328633 + MLT1E2 LTR MaLR 165 625 -2 5 660 327 317 77 28 chr12 9930498 9930641 -111326889 + MLT1A1 LTR MaLR 247 396 -12 5 660 194 317 0 0 chr12 9931949 9932009 -111325521 + L3 LINE CR1 4425 4484 -5 5 660 468 297 22 93 chr12 9932341 9932523 -111325007 + B4 SINE B4 3 171 -121 5 660 4330 132 3 1 chr12 9932595 9933325 -111324205 - Lx2A LINE L1 -1043 4834 4104 5 660 8415 149 25 5 chr12 9933322 9934829 -111322701 + Lx2A LINE L1 4804 6340 -668 5 660 243 0 0 0 chr12 9934829 9934856 -111322674 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 660 8415 131 14 9 chr12 9934856 9935490 -111322040 + Lx2A LINE L1 6341 6974 -34 5 660 412 115 0 13 chr12 9935490 9935569 -111321961 + Lx2A LINE L1 6930 7007 -1 5 660 289 345 62 14 chr12 9935800 9935944 -111321586 + MLT1E3 LTR MaLR 300 450 -174 5 660 248 345 70 17 chr12 9936781 9936896 -111320634 + B1F SINE Alu 21 141 -8 5 660 222 260 0 74 chr12 9936911 9936965 -111320565 + ID4_ SINE ID 17 66 -17 5 660 23 33 0 0 chr12 9937694 9937724 -111319806 + AT_rich Low_complexity Low_complexity 1 30 0 5 660 267 325 30 37 chr12 9938235 9938369 -111319161 + MIRc SINE MIR 60 192 -76 5 660 5697 43 0 0 chr12 9938398 9939076 -111318454 + L1Md_F2 LINE L1 5887 6564 -18 5 660 254 318 61 0 chr12 9939631 9939697 -111317833 + RSINE1 SINE B4 68 137 -28 5 660 298 283 33 0 chr12 9940376 9940468 -111317062 + MER3 DNA MER1_type 7 101 -108 5 660 422 324 73 13 chr12 9940478 9940628 -111316902 + RSINE1 SINE B4 7 165 0 5 660 182 346 85 57 chr12 9941489 9941630 -111315900 - L2 LINE L2 -1049 2370 2226 5 660 711 269 124 25 chr12 9942154 9942372 -111315158 + Lx8 LINE L1 7083 7333 -140 5 660 489 34 0 0 chr12 9942372 9942431 -111315099 + (TAG)n Simple_repeat Simple_repeat 1 59 0 5 660 711 269 124 25 chr12 9942431 9942567 -111314963 + Lx8 LINE L1 7334 7471 -2 5 660 618 172 0 0 chr12 9943449 9943577 -111313953 + (TG)n Simple_repeat Simple_repeat 1 128 0 5 660 237 108 0 0 chr12 9947110 9947147 -111310383 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 5 660 243 204 41 0 chr12 9947313 9947362 -111310168 + GA-rich Low_complexity Low_complexity 4 54 0 5 660 974 102 0 52 chr12 9949029 9949184 -111308346 + B1_Mus1 SINE Alu 2 148 0 5 660 194 128 0 25 chr12 9949189 9949229 -111308301 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 660 21 0 0 0 chr12 9949229 9949250 -111308280 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 399 41 0 0 chr12 9949368 9949417 -111308113 + (T)n Simple_repeat Simple_repeat 1 49 0 5 660 432 0 0 0 chr12 9950542 9950590 -111306940 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 660 183 345 33 11 chr12 9951052 9951143 -111306387 + MIR SINE MIR 49 141 -67 5 660 360 0 0 0 chr12 9952292 9952332 -111305198 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 660 294 345 18 9 chr12 9952641 9952755 -111304775 + PB1D7 SINE Alu 5 119 -1 5 660 517 243 0 182 chr12 9953427 9953608 -111303922 - B1_Mur3 SINE Alu 0 149 2 5 660 346 260 136 55 chr12 9953661 9953897 -111303633 - L1MD LINE L1 -1267 4879 4625 5 660 251 306 75 75 chr12 9953948 9954054 -111303476 - B4 SINE B4 -95 197 92 5 660 254 330 21 0 chr12 9955022 9955116 -111302414 + MLT1J LTR MaLR 417 512 0 5 660 612 0 0 0 chr12 9956486 9956554 -111300976 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 5 660 274 384 34 77 chr12 9957398 9957553 -111299977 + ORR1E LTR MaLR 1 151 -208 5 660 3435 133 39 14 chr12 9957553 9958124 -111299406 + Lx2 LINE L1 6413 6997 0 5 660 274 384 34 77 chr12 9958124 9958295 -111299235 + ORR1E LTR MaLR 152 313 -46 5 660 600 14 0 0 chr12 9958372 9958441 -111299089 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 5 660 1155 87 0 0 chr12 9958441 9958602 -111298928 + (TTTC)n Simple_repeat Simple_repeat 2 162 0 5 660 1069 103 7 0 chr12 9958602 9958747 -111298783 - B1_Mus1 SINE Alu -2 146 1 5 660 237 306 0 0 chr12 9958767 9958839 -111298691 - L1MD2 LINE L1 -125 6234 6163 5 661 192 362 62 28 chr12 9961565 9961710 -111295820 - MIR SINE MIR -105 157 8 5 661 1042 101 0 13 chr12 9962238 9962388 -111295142 - B1_Mus1 SINE Alu 0 148 1 5 661 480 18 0 0 chr12 9962425 9962482 -111295048 + (TGG)n Simple_repeat Simple_repeat 1 57 0 5 661 768 22 0 0 chr12 9963514 9963604 -111293926 + (CAAAA)n Simple_repeat Simple_repeat 3 92 0 5 661 1773 187 45 6 chr12 9964657 9964990 -111292540 + ORR1B1 LTR MaLR 41 386 -8 5 661 823 271 56 123 chr12 9965571 9965767 -111291763 + MTEa LTR MaLR 1 196 -183 5 661 435 68 0 0 chr12 9965767 9965826 -111291704 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 5 661 823 271 56 123 chr12 9965826 9966003 -111291527 + MTEa LTR MaLR 197 349 -30 5 661 9914 125 31 14 chr12 9966003 9967379 -111290151 - Lx LINE L1 -24 6630 5265 5 661 2967 69 0 0 chr12 9967379 9967757 -111289773 - L1_Mus1 LINE L1 -2 6565 6188 5 661 9914 152 19 25 chr12 9967757 9968281 -111289249 - Lx LINE L1 -619 5264 4736 5 661 360 0 0 0 chr12 9968281 9968321 -111289209 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 661 9914 152 19 25 chr12 9968321 9968956 -111288574 - Lx LINE L1 -1148 4735 4097 5 661 3263 41 5 10 chr12 9969003 9969401 -111288129 + MTA_Mm LTR MaLR 1 396 0 5 661 215 295 26 0 chr12 9969428 9969506 -111288024 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 661 3397 183 70 11 chr12 9969614 9970388 -111287142 - Lx5 LINE L1 -669 6381 5534 5 661 3476 197 19 0 chr12 9970388 9971032 -111286498 + Lx5 LINE L1 6392 7047 -3 5 661 714 349 39 47 chr12 9971308 9971690 -111285840 - MTEa LTR MaLR 0 379 1 5 661 2521 193 17 7 chr12 9971902 9972362 -111285168 + Lx4A LINE L1 6589 7053 -5 5 661 1003 283 60 21 chr12 9972424 9972706 -111284824 + MTEa LTR MaLR 50 342 -37 5 661 559 257 69 43 chr12 9972946 9973178 -111284352 - Lx9 LINE L1 -1675 5969 5732 5 661 22 35 0 0 chr12 9973187 9973216 -111284314 + AT_rich Low_complexity Low_complexity 1 29 0 5 661 489 135 55 0 chr12 9973228 9973391 -111284139 + (TA)n Simple_repeat Simple_repeat 1 172 0 5 661 1564 239 56 22 chr12 9973391 9973840 -111283690 - Lx9 LINE L1 -124 5723 5260 5 661 1600 269 111 8 chr12 9973820 9974315 -111283215 + Lx9 LINE L1 6916 7461 -183 6 661 235 179 77 0 chr12 9974315 9974393 -111283137 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 6 661 371 180 0 0 chr12 9974408 9974469 -111283061 + L1_Rod LINE L1 5340 5400 -447 6 661 202 158 38 50 chr12 9974469 9974549 -111282981 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 661 468 0 0 0 chr12 9974550 9974602 -111282928 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 6 661 205 381 38 9 chr12 9974834 9974940 -111282590 + MIRc SINE MIR 73 181 -87 6 661 513 268 28 7 chr12 9976659 9976802 -111280728 + B1_Mur1 SINE Alu 1 146 -3 6 661 229 147 83 64 chr12 9976803 9976912 -111280618 + Charlie1b DNA MER1_type 297 407 -116 6 661 892 321 39 36 chr12 9976936 9977292 -111280238 + MTEa LTR MaLR 1 357 -22 6 661 1208 126 6 0 chr12 9978450 9978632 -111278898 - URR1B DNA MER1_type 0 225 43 6 661 210 171 14 28 chr12 9979499 9979571 -111277959 + (CATA)n Simple_repeat Simple_repeat 1 71 0 6 661 467 33 0 16 chr12 9979950 9980012 -111277518 + (TATG)n Simple_repeat Simple_repeat 2 62 0 6 661 522 83 0 0 chr12 9982243 9982315 -111275215 + (TCCCC)n Simple_repeat Simple_repeat 5 76 0 6 661 375 302 9 19 chr12 9982402 9982510 -111275020 - ID_B1 SINE B4 -16 208 102 6 661 331 338 29 0 chr12 9982889 9983025 -111274505 + MER121 Unknown Unknown 272 411 -1 6 661 220 143 26 79 chr12 9984039 9984115 -111273415 + (TATAA)n Simple_repeat Simple_repeat 5 76 0 6 661 423 414 20 16 chr12 9984269 9984517 -111273013 + B4 SINE B4 30 278 -14 6 661 492 252 170 25 chr12 9984904 9985063 -111272467 + B3 SINE B2 1 182 -34 6 661 228 130 100 0 chr12 9985072 9985172 -111272358 + (CATA)n Simple_repeat Simple_repeat 2 111 0 6 661 474 18 0 0 chr12 9985221 9985276 -111272254 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 661 1145 89 0 6 chr12 9986792 9986961 -111270569 + (GAAA)n Simple_repeat Simple_repeat 2 169 0 6 661 259 96 19 19 chr12 9987018 9987071 -111270459 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 6 661 1093 71 14 0 chr12 9987203 9987343 -111270187 + B1_Mus1 SINE Alu 1 142 -6 6 661 216 86 0 0 chr12 9987345 9987380 -111270150 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 661 231 259 17 0 chr12 9987934 9987992 -111269538 + GA-rich Low_complexity Low_complexity 2 60 0 6 661 264 325 12 0 chr12 9988563 9988646 -111268884 + Lx8 LINE L1 7043 7126 -347 6 661 575 285 25 35 chr12 9988876 9989076 -111268454 - MER3 DNA MER1_type -6 203 6 6 661 874 154 7 27 chr12 9989582 9989729 -111267801 + B1_Mur4 SINE Alu 2 145 -5 6 661 238 153 0 76 chr12 9989742 9989834 -111267696 + GA-rich Low_complexity Low_complexity 2 86 0 6 661 208 191 21 0 chr12 9991523 9991570 -111265960 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 6 661 213 39 0 0 chr12 9991620 9991646 -111265884 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 661 671 229 91 14 chr12 9992697 9992876 -111264654 + B3A SINE B2 2 186 -30 6 661 1958 271 85 34 chr12 9992887 9993793 -111263737 - L1MA5 LINE L1 -17 6283 5332 6 661 606 269 15 7 chr12 9993868 9994003 -111263527 + B1F SINE Alu 6 141 -8 6 661 422 345 82 11 chr12 9994091 9994273 -111263257 + B4A SINE B4 53 247 -45 6 661 2273 232 49 56 chr12 9994421 9994714 -111262816 - Lx9 LINE L1 -9 7635 7336 6 661 200 35 35 0 chr12 9994714 9994743 -111262787 + (TTG)n Simple_repeat Simple_repeat 1 30 0 6 661 2273 232 49 56 chr12 9994743 9995198 -111262332 - Lx9 LINE L1 -309 7335 6893 6 661 2469 198 26 16 chr12 9995430 9995932 -111261598 + Lx7 LINE L1 6810 7316 -380 6 661 2216 162 45 2 chr12 9997312 9997714 -111259816 + MTC LTR MaLR 1 419 -2 6 661 675 160 53 0 chr12 9997831 9997962 -111259568 - URR1B DNA MER1_type -2 223 86 6 661 379 323 8 16 chr12 9998948 9999077 -111258453 + Tigger15a DNA TcMar 579 706 -9 6 661 344 343 0 0 chr12 10001476 10001575 -111255955 - RSINE1 SINE B4 -61 104 6 1 661 459 0 0 0 chr12 10001915 10001966 -111255564 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 661 360 318 176 21 chr12 10002807 10003000 -111254530 + HAL1-3A_ME LINE L1 1978 2200 -658 3 661 517 83 0 23 chr12 10003000 10003086 -111254444 + (GGA)n Simple_repeat Simple_repeat 1 84 0 4 661 1421 256 50 8 chr12 10004049 10004407 -111253123 - MER121 Unknown Unknown -27 385 13 5 661 639 152 0 0 chr12 10005010 10005122 -111252408 + CT-rich Low_complexity Low_complexity 2 113 0 6 661 557 371 28 19 chr12 10005184 10005398 -111252132 - B4A SINE B4 -76 216 1 7 661 253 337 82 27 chr12 10005769 10005952 -111251578 + L2 LINE L2 2765 2957 -462 8 661 7201 169 43 11 chr12 10007593 10009077 -111248453 - Lx3C LINE L1 -2 6974 5453 9 661 306 0 0 0 chr12 10009077 10009111 -111248419 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 661 5507 136 70 11 chr12 10009111 10009667 -111247863 - Lx3C LINE L1 -434 5452 4860 9 661 180 286 43 0 chr12 10009964 10010034 -111247496 + L3 LINE CR1 2289 2361 -2128 1 661 893 296 107 23 chr12 10010959 10011267 -111246263 - MTE2b LTR MaLR 0 379 46 1 661 917 307 18 4 chr12 10012151 10012380 -111245150 + B4A SINE B4 2 233 -59 1 661 221 339 25 84 chr12 10012410 10012529 -111245001 + RSINE1 SINE B4 54 165 0 1 661 537 16 0 0 chr12 10012623 10012685 -111244845 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 661 180 0 0 0 chr12 10012686 10012706 -111244824 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 1 661 989 0 21 28 chr12 10013477 10013622 -111243908 + (TCTCC)n Simple_repeat Simple_repeat 2 145 0 1 661 636 97 0 0 chr12 10013627 10013720 -111243810 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 1 661 21 36 0 0 chr12 10013724 10013752 -111243778 + AT_rich Low_complexity Low_complexity 1 28 0 1 661 253 306 11 66 chr12 10014352 10014443 -111243087 - RSINE1 SINE B4 -2 163 78 2 661 1882 159 87 25 chr12 10014558 10014925 -111242605 - RMER1B Other Other -2 1064 675 2 661 251 351 0 13 chr12 10014947 10015022 -111242508 - RSINE1 SINE B4 -91 74 1 2 661 1040 216 13 22 chr12 10015879 10016111 -111241419 + Lx9 LINE L1 7222 7451 -193 2 661 387 0 0 0 chr12 10016167 10016210 -111241320 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 661 1310 343 41 22 chr12 10016232 10016816 -111240714 + Lx8 LINE L1 6736 7330 -143 2 661 303 270 122 26 chr12 10016879 10017035 -111240495 + L1MD1 LINE L1 5008 5178 -968 2 661 3660 197 21 47 chr12 10017124 10017875 -111239655 + Lx5 LINE L1 6317 7048 -2 2 661 382 298 68 114 chr12 10017878 10018158 -111239372 + L1M5 LINE L1 5295 5561 -618 2 661 4870 108 87 78 chr12 10018167 10019079 -111238451 + L1_Mus2 LINE L1 5647 6566 0 2 661 738 318 27 4 chr12 10019105 10019363 -111238167 - RCHARR1 DNA MER1_type -185 789 526 2 661 996 279 96 23 chr12 10019363 10019559 -111237971 + ORR1D2 LTR MaLR 1 202 -168 3 661 597 28 0 0 chr12 10019559 10019630 -111237900 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 661 996 279 96 23 chr12 10019630 10019778 -111237752 + ORR1D2 LTR MaLR 203 369 -1 3 661 1078 309 102 22 chr12 10019778 10020266 -111237264 - RCHARR1 DNA MER1_type -444 530 3 2 661 290 331 81 40 chr12 10020269 10020590 -111236940 + L1MD1 LINE L1 5650 5983 -259 2 661 592 311 29 10 chr12 10020865 10021073 -111236457 - Tigger5 DNA MER2_type -618 1788 1577 3 661 867 281 177 3 chr12 10021088 10021455 -111236075 + Tigger5 DNA MER2_type 1805 2235 -171 3 661 593 115 10 0 chr12 10021961 10022057 -111235473 + (TTTTC)n Simple_repeat Simple_repeat 2 98 0 3 661 369 0 0 0 chr12 10023551 10023592 -111233938 + (A)n Simple_repeat Simple_repeat 1 41 0 3 661 200 61 61 0 chr12 10025050 10025083 -111232447 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 661 185 358 88 15 chr12 10025180 10025316 -111232214 - MIRc SINE MIR -100 168 23 3 661 540 394 27 0 chr12 10025399 10025587 -111231943 - B3A SINE B2 -5 193 1 3 661 30529 92 11 14 chr12 10026080 10030829 -111226701 + L1Md_F2 LINE L1 371 5138 -745 3 661 3346 56 28 0 chr12 10030829 10031260 -111226270 + L1Md_F2 LINE L1 6139 6581 -1 4 661 30529 82 6 16 chr12 10031260 10031698 -111225832 + L1Md_F2 LINE L1 5139 5540 -343 3 661 7311 72 19 1 chr12 10031698 10032673 -111224857 + L1Md_F2 LINE L1 5590 6582 0 3 661 21 0 0 0 chr12 10032697 10032718 -111224812 + AT_rich Low_complexity Low_complexity 1 21 0 4 661 2343 167 233 25 chr12 10032816 10033085 -111224445 + RMER6C LTR ERVK 1 306 -384 4 661 777 71 0 0 chr12 10033085 10033198 -111224332 + (GA)n Simple_repeat Simple_repeat 1 113 0 4 661 2343 167 233 25 chr12 10033198 10033499 -111224031 + RMER6C LTR ERVK 307 689 -1 4 661 353 317 83 0 chr12 10033891 10034036 -111223494 + RMER30 DNA MER1_type 8 164 -38 4 661 39 22 0 0 chr12 10034099 10034145 -111223385 + AT_rich Low_complexity Low_complexity 1 46 0 4 661 285 279 11 11 chr12 10036830 10036917 -111220613 + MLT1L LTR MaLR 524 610 0 4 661 304 304 73 7 chr12 10037953 10038089 -111219441 + L1ME1 LINE L1 5795 5939 -240 4 661 1509 241 84 25 chr12 10039306 10039414 -111218116 + Lx7 LINE L1 5295 5414 -433 4 661 280 0 0 48 chr12 10039414 10039456 -111218074 + (TTA)n Simple_repeat Simple_repeat 2 41 0 4 661 1509 258 84 27 chr12 10039456 10039960 -111217570 + Lx7 LINE L1 5415 5971 -1673 4 661 1007 299 6 18 chr12 10040544 10040839 -111216691 + ORR1E LTR MaLR 6 289 -81 5 661 230 262 102 73 chr12 10041023 10041229 -111216301 + L1MC3 LINE L1 7514 7725 -60 5 661 471 35 0 0 chr12 10041258 10041315 -111216215 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 661 189 0 0 0 chr12 10041315 10041335 -111216195 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 661 389 192 77 0 chr12 10041345 10041449 -111216081 + Lx9 LINE L1 7532 7643 -1 5 661 248 254 0 34 chr12 10042855 10042973 -111214557 + ORR1E-int LTR MaLR 641 754 -755 5 661 1016 113 0 0 chr12 10042871 10043013 -111214517 + B1_Mus1 SINE Alu 7 148 0 5 661 397 264 43 92 chr12 10042874 10043037 -111214493 + B4A SINE B4 94 248 -44 5 661 180 179 0 0 chr12 10044509 10044548 -111212982 + CT-rich Low_complexity Low_complexity 3 41 0 5 661 489 352 93 24 chr12 10044919 10045297 -111212233 + MER119 DNA MER1_type 180 583 0 5 661 774 50 0 0 chr12 10045787 10045886 -111211644 + (GA)n Simple_repeat Simple_repeat 2 100 0 5 661 245 317 25 0 chr12 10047570 10047690 -111209840 + (CATATA)n Simple_repeat Simple_repeat 5 127 0 6 661 647 57 71 54 chr12 10048124 10048236 -111209294 + L1_Mus2 LINE L1 6452 6565 -1 6 661 185 395 105 0 chr12 10048334 10048448 -111209082 + L2b LINE L2 3249 3374 -1 6 661 531 82 0 0 chr12 10049065 10049138 -111208392 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 661 1708 139 0 42 chr12 10050372 10050680 -111206850 + L1Md_F2 LINE L1 6284 6578 -4 6 661 23 0 0 0 chr12 10050743 10050766 -111206764 + AT_rich Low_complexity Low_complexity 1 23 0 6 661 416 317 63 34 chr12 10050822 10051172 -111206358 + Charlie2b DNA MER1_type 2423 2782 0 6 661 2183 192 10 0 chr12 10051848 10052243 -111205287 - MTC LTR MaLR 0 421 23 6 661 1775 199 21 40 chr12 10052364 10052789 -111204741 - MT2A LTR ERVL -48 553 4 6 661 2158 91 13 7 chr12 10053728 10054038 -111203492 + L1_Mus1 LINE L1 6246 6557 -10 6 661 290 26 26 0 chr12 10054038 10054077 -111203453 + (TAA)n Simple_repeat Simple_repeat 1 40 0 7 661 951 256 67 91 chr12 10055862 10056341 -111201189 + RMER2 LTR ERV1 1 565 -2 7 661 541 125 0 0 chr12 10056800 10056880 -111200650 - Lx2 LINE L1 -183 6814 6735 7 661 1115 122 27 0 chr12 10056884 10057072 -111200458 + Lx2 LINE L1 6801 6993 -4 7 661 228 367 76 22 chr12 10058289 10058473 -111199057 - LTR84a LTR ERVL -3 754 561 7 661 396 0 0 0 chr12 10058745 10058789 -111198741 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 661 1132 267 29 0 chr12 10058789 10059070 -111198460 - B4A SINE B4 -1 291 3 7 661 248 372 20 20 chr12 10059280 10059428 -111198102 + Lx7 LINE L1 7155 7302 -394 7 661 14417 101 11 9 chr12 10059888 10062943 -111194587 + L1Md_F2 LINE L1 183 3246 -2637 7 661 8255 30 14 0 chr12 10062943 10064061 -111193469 - L1Md_F2 LINE L1 0 6582 5450 7 661 3478 80 2 0 chr12 10064059 10064510 -111193020 + L1Md_F2 LINE L1 5135 5586 -297 7 661 7572 65 8 2 chr12 10064510 10065497 -111192033 + L1Md_F2 LINE L1 5587 6579 -3 7 661 240 340 19 9 chr12 10066828 10066935 -111190595 + MLT1A0 LTR MaLR 1 108 -257 7 661 305 271 113 14 chr12 10066985 10067127 -111190403 + MLT1A0 LTR MaLR 206 361 -4 7 661 45 34 0 0 chr12 10067228 10067287 -111190243 + AT_rich Low_complexity Low_complexity 1 59 0 8 661 465 19 0 0 chr12 10067603 10067657 -111189873 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 8 661 795 158 142 34 chr12 10067895 10068101 -111189429 - ORR1C2 LTR MaLR -5 379 149 8 661 311 250 12 12 chr12 10068101 10068182 -111189348 + GA-rich Low_complexity Low_complexity 6 86 0 8 661 369 155 273 20 chr12 10068182 10068281 -111189249 - ORR1C2 LTR MaLR -199 179 56 8 661 624 342 50 7 chr12 10069381 10069661 -111187869 + B4A SINE B4 1 292 0 8 661 234 0 0 0 chr12 10069909 10069935 -111187595 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 661 558 0 0 0 chr12 10069935 10069996 -111187534 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 661 325 361 67 101 chr12 10071152 10071479 -111186051 - MLT1D LTR MaLR -74 431 116 8 661 240 343 0 0 chr12 10073178 10073245 -111184285 + (TGAG)n Simple_repeat Simple_repeat 1 67 0 8 661 200 361 20 30 chr12 10073617 10073717 -111183813 + MIRb SINE MIR 20 118 -150 8 661 946 204 14 23 chr12 10074565 10074786 -111182744 - MER121 Unknown Unknown -165 247 29 9 661 798 270 5 31 chr12 10075661 10075856 -111181674 - B3A SINE B2 -8 190 1 9 661 966 362 22 8 chr12 10075884 10076285 -111181245 - Lx8 LINE L1 -148 7325 6919 9 661 324 336 9 18 chr12 10077195 10077307 -111180223 - MIRc SINE MIR -29 239 129 9 661 352 331 23 87 chr12 10078512 10078684 -111178846 - MER20 DNA MER1_type -55 164 4 9 661 6677 97 74 1 chr12 10080641 10082034 -111175496 + L1_Mus3 LINE L1 5146 6631 -7 9 661 411 21 0 0 chr12 10082271 10082319 -111175211 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 661 196 291 49 25 chr12 10082432 10082513 -111175017 - MIRc SINE MIR -106 162 80 9 661 813 176 35 0 chr12 10083106 10083248 -111174282 - B1_Mur3 SINE Alu 0 149 3 9 661 234 0 0 0 chr12 10085560 10085586 -111171944 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 9 661 234 0 0 0 chr12 10085714 10085740 -111171790 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 661 567 0 0 0 chr12 10086847 10086910 -111170620 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 661 288 0 0 0 chr12 10088544 10088576 -111168954 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 661 414 0 0 0 chr12 10089215 10089261 -111168269 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 661 584 308 17 28 chr12 10089324 10089501 -111168029 + B4A SINE B4 44 218 -74 1 661 585 0 0 0 chr12 10089508 10089573 -111167957 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 661 230 268 97 38 chr12 10089651 10089837 -111167693 + L1M7 LINE L1 1049 1245 -4973 1 661 242 350 46 60 chr12 10090541 10090909 -111166621 - L1ME5 LINE L1 -240 5954 5592 1 661 250 288 27 0 chr12 10090971 10091044 -111166486 - L1M5 LINE L1 -694 5500 5426 1 661 306 0 0 0 chr12 10091045 10091079 -111166451 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 661 21 0 0 0 chr12 10092107 10092128 -111165402 + AT_rich Low_complexity Low_complexity 1 21 0 1 82 332 279 106 36 chr12 10092440 10092771 -111164759 - L1M5 LINE L1 -1467 4679 4326 1 662 369 320 78 54 chr12 10093557 10093815 -111163715 + L1M5 LINE L1 4865 5128 -1018 1 662 3142 44 5 0 chr12 10094171 10094556 -111162974 - L1Md_F3 LINE L1 0 6584 6198 1 662 230 81 27 0 chr12 10095005 10095042 -111162488 + (TTA)n Simple_repeat Simple_repeat 3 40 0 1 662 216 67 0 0 chr12 10095448 10095478 -111162052 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 662 226 284 8 57 chr12 10097263 10097386 -111160144 - Charlie10 DNA MER1_type -25 2797 2681 1 662 3388 28 8 0 chr12 10097526 10097919 -111159611 - MTA_Mm LTR MaLR 0 396 1 1 662 1185 134 114 0 chr12 10098512 10098713 -111158817 + URR1A DNA MER1_type 1 224 -2 1 662 1046 300 87 8 chr12 10099217 10099607 -111157923 - Lx8 LINE L1 -6 7467 7047 1 662 1297 304 119 13 chr12 10099692 10100229 -111157301 + Lx8 LINE L1 6298 6891 -582 1 662 508 301 0 54 chr12 10100245 10100431 -111157099 - Lx8 LINE L1 -564 6909 6734 1 662 1041 201 26 31 chr12 10100495 10100721 -111156809 + URR1B DNA MER1_type 1 225 0 1 662 605 14 14 0 chr12 10102186 10102260 -111155270 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 662 471 60 0 0 chr12 10103948 10104015 -111153515 + (CTCA)n Simple_repeat Simple_repeat 1 67 0 1 662 241 294 20 0 chr12 10104018 10104120 -111153410 - Lx9 LINE L1 -140 7504 7401 1 662 458 75 43 0 chr12 10104137 10104230 -111153300 + (TTTTTG)n Simple_repeat Simple_repeat 6 102 0 1 662 905 93 63 21 chr12 10104230 10104372 -111153158 - B1_Mus1 SINE Alu 0 148 1 1 662 690 282 3 133 chr12 10104410 10104696 -111152834 - Lx9 LINE L1 -891 6753 6505 1 662 328 333 7 10 chr12 10105287 10105425 -111152105 - L2a LINE L2 -10 3416 3234 1 662 516 371 57 53 chr12 10106336 10106845 -111150685 + MLT1J LTR MaLR 2 512 0 1 662 246 105 0 0 chr12 10108245 10108283 -111149247 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 662 598 311 83 53 chr12 10108622 10108671 -111148859 + MTEb LTR MaLR 32 82 -297 1 662 626 0 14 0 chr12 10108671 10108745 -111148785 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 662 598 311 83 53 chr12 10108745 10108960 -111148570 + MTEb LTR MaLR 83 304 -75 1 662 204 179 0 0 chr12 10109425 10109464 -111148066 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 662 402 21 0 0 chr12 10109466 10109513 -111148017 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1 662 403 374 0 7 chr12 10109559 10109699 -111147831 - B4A SINE B4 -4 288 150 1 662 629 215 30 0 chr12 10110005 10110140 -111147390 + B1F SINE Alu 2 140 -9 1 662 238 358 83 101 chr12 10110859 10111195 -111146335 - ORR1E LTR MaLR -12 347 18 1 662 253 98 0 0 chr12 10111720 10111771 -111145759 - L1_Mus4 LINE L1 -2 6634 6584 1 662 1420 160 70 57 chr12 10112402 10112701 -111144829 - RLTR41 LTR ERV1 0 446 144 1 662 193 28 0 100 chr12 10112775 10112815 -111144715 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 1 662 415 194 57 28 chr12 10112815 10112921 -111144609 - RLTR41 LTR ERV1 -335 111 3 1 662 413 104 13 0 chr12 10112997 10113074 -111144456 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 662 1615 100 0 51 chr12 10113090 10113343 -111144187 + Lx9 LINE L1 6850 7089 -555 1 662 775 234 130 59 chr12 10114066 10114320 -111143210 - RLTR25B LTR ERVK 0 1028 757 1 662 222 37 0 0 chr12 10114393 10114420 -111143110 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 662 837 124 62 7 chr12 10114430 10114576 -111142954 - RLTR25B LTR ERVK -255 773 620 1 662 333 0 0 0 chr12 10114603 10114640 -111142890 + (T)n Simple_repeat Simple_repeat 1 37 0 1 662 1233 71 0 51 chr12 10114641 10114819 -111142711 + L1_Mus2 LINE L1 6397 6565 -1 1 662 34 24 0 0 chr12 10114819 10114860 -111142670 + AT_rich Low_complexity Low_complexity 1 41 0 1 662 1142 58 13 0 chr12 10115020 10115174 -111142356 + (GAAA)n Simple_repeat Simple_repeat 3 158 0 1 662 491 0 17 0 chr12 10115198 10115257 -111142273 + (TAAAA)n Simple_repeat Simple_repeat 2 61 0 1 662 690 13 0 0 chr12 10115287 10115366 -111142164 + (TTCTC)n Simple_repeat Simple_repeat 2 80 0 1 662 504 83 0 0 chr12 10115375 10115447 -111142083 - Lx LINE L1 -5 6649 6578 1 662 1706 141 4 4 chr12 10115452 10115730 -111141800 + L1_Mm LINE L1 5088 5365 -518 1 662 243 0 0 0 chr12 10115734 10115761 -111141769 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 662 1139 96 0 0 chr12 10115773 10115919 -111141611 - B1_Mm SINE Alu -1 146 1 1 662 1609 147 31 7 chr12 10115919 10116206 -111141324 - RLTR25A LTR ERVK -408 695 402 1 662 198 0 0 0 chr12 10116218 10116240 -111141290 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1 662 1943 227 134 0 chr12 10116255 10116956 -111140574 - Lx3C LINE L1 -2 6974 6180 1 662 436 139 46 11 chr12 10116956 10117043 -111140487 + L1_Mur2 LINE L1 5262 5351 -526 1 662 1121 177 70 112 chr12 10117043 10117329 -111140201 - RLTR25A LTR ERVK -695 333 60 1 662 5174 54 0 0 chr12 10117520 10118149 -111139381 + L1Md_F2 LINE L1 4958 5586 -297 1 662 8477 55 4 0 chr12 10118149 10119141 -111138389 + L1Md_F2 LINE L1 5587 6582 0 1 662 285 295 165 33 chr12 10119467 10119649 -111137881 + MER46C DNA MER2_type 3 208 -130 1 662 1983 292 72 39 chr12 10120545 10121518 -111136012 + Lx8 LINE L1 5220 6283 -1413 1 662 504 0 0 0 chr12 10121518 10121574 -111135956 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 662 2864 285 72 60 chr12 10121574 10122750 -111134780 + Lx8 LINE L1 6284 7473 0 1 662 300 70 0 0 chr12 10123438 10123481 -111134049 + (T)n Simple_repeat Simple_repeat 1 43 0 1 662 1292 27 0 13 chr12 10123481 10123631 -111133899 - B1_Mus1 SINE Alu 0 148 1 1 662 2795 48 3 9 chr12 10124360 10124696 -111132834 - L1Md_F2 LINE L1 -15 6567 6234 1 662 21 36 0 0 chr12 10124701 10124729 -111132801 + AT_rich Low_complexity Low_complexity 1 28 0 1 662 492 75 0 0 chr12 10124759 10124826 -111132704 - L1_Mus2 LINE L1 0 6566 6500 1 662 251 123 0 44 chr12 10124897 10124965 -111132565 + T-rich Low_complexity Low_complexity 1 65 0 1 662 726 44 0 0 chr12 10124976 10125066 -111132464 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1 662 290 79 175 0 chr12 10125208 10125271 -111132259 + Lx3_Mus LINE L1 6936 7009 0 1 662 23 0 0 0 chr12 10125271 10125294 -111132236 + AT_rich Low_complexity Low_complexity 1 23 0 1 662 3297 80 2 0 chr12 10125455 10125854 -111131676 + MTB LTR MaLR 1 400 0 1 662 25 65 0 0 chr12 10126400 10126446 -111131084 + AT_rich Low_complexity Low_complexity 1 46 0 1 662 5031 74 2 6 chr12 10126456 10127080 -111130450 + L1_Mus2 LINE L1 5946 6566 0 1 662 378 0 0 0 chr12 10127091 10127133 -111130397 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 662 4122 221 31 10 chr12 10127478 10128570 -111128960 - Lx5 LINE L1 -4 7046 5826 1 662 247 273 13 13 chr12 10130676 10130754 -111126776 + GA-rich Low_complexity Low_complexity 2 79 0 1 662 23 0 0 0 chr12 10130805 10130828 -111126702 + AT_rich Low_complexity Low_complexity 1 23 0 1 662 946 62 48 7 chr12 10130839 10130985 -111126545 - L1_Mus4 LINE L1 0 6636 6485 1 662 1099 209 18 14 chr12 10131407 10131630 -111125900 + URR1B DNA MER1_type 1 224 -1 1 662 181 317 0 16 chr12 10132227 10132288 -111125242 - L3 LINE CR1 -926 3563 3504 1 662 225 94 0 0 chr12 10132998 10133030 -111124500 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 662 21 0 0 0 chr12 10133496 10133517 -111124013 + AT_rich Low_complexity Low_complexity 1 21 0 1 662 594 39 0 0 chr12 10134574 10134651 -111122879 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 662 411 38 0 0 chr12 10135535 10135588 -111121942 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 662 195 270 31 16 chr12 10136646 10136710 -111120820 - MIR SINE MIR -37 225 161 1 662 260 274 93 39 chr12 10137143 10137272 -111120258 - CYRA11_Mm Unknown Y-chromosome -385 232 97 1 662 579 347 128 21 chr12 10138229 10138556 -111118974 - MLT1A0 LTR MaLR -3 362 1 1 662 264 306 40 24 chr12 10138602 10138726 -111118804 + L1MD3 LINE L1 7857 7982 -13 1 662 2228 74 0 86 chr12 10138851 10139177 -111118353 - L1_Mus2 LINE L1 -1 6565 6268 1 662 3225 37 0 0 chr12 10139177 10139558 -111117972 + L1_Mus2 LINE L1 5706 6086 -480 1 662 7229 83 23 6 chr12 10139659 10140615 -111116915 + Lx3_Mus LINE L1 6033 7004 -5 1 662 276 30 0 0 chr12 10140637 10140670 -111116860 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 662 283 184 0 0 chr12 10141513 10141562 -111115968 + RSINE1 SINE B4 108 156 -9 1 662 23 0 0 0 chr12 10142057 10142080 -111115450 + AT_rich Low_complexity Low_complexity 1 23 0 1 662 191 62 62 0 chr12 10142403 10142435 -111115095 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 1 662 992 252 77 51 chr12 10143479 10143792 -111113738 + MER2 DNA MER2_type 25 345 0 1 662 23 0 0 0 chr12 10143936 10143959 -111113571 + AT_rich Low_complexity Low_complexity 1 23 0 1 662 210 350 57 57 chr12 10145091 10145197 -111112333 - L2a LINE L2 -357 3069 2964 1 662 331 327 127 6 chr12 10145355 10145512 -111112018 + MLT1E2 LTR MaLR 137 312 -315 1 662 345 162 0 119 chr12 10145914 10145998 -111111532 - B3 SINE B2 -134 82 9 1 662 768 231 134 5 chr12 10146059 10146246 -111111284 - B3 SINE B2 0 216 6 2 662 211 248 156 37 chr12 10147154 10147263 -111110267 + MIR3 SINE MIR 2 123 -85 2 662 3156 89 12 5 chr12 10147733 10148151 -111109379 - Lx LINE L1 -3 6651 6231 2 662 4492 228 74 27 chr12 10148480 10149569 -111107961 - Lx7 LINE L1 -77 7619 6479 2 662 2079 254 86 64 chr12 10149534 10149901 -111107629 + Lx7 LINE L1 5697 6093 -1603 2 662 3280 76 2 2 chr12 10149901 10150297 -111107233 - MTA_Mm LTR MaLR 0 396 1 2 662 2079 254 86 64 chr12 10150297 10150723 -111106807 + Lx7 LINE L1 6094 6507 -1189 2 662 23 0 0 0 chr12 10151381 10151404 -111106126 + AT_rich Low_complexity Low_complexity 1 23 0 2 662 949 179 41 52 chr12 10151704 10151898 -111105632 - B2_Mm2 SINE B2 -2 193 2 2 662 16012 211 40 17 chr12 10151943 10153551 -111103979 - Lx5 LINE L1 0 7050 5433 2 662 1155 96 0 7 chr12 10153551 10153698 -111103832 - B1_Mm SINE Alu 0 147 2 2 662 16012 178 43 21 chr12 10153698 10153825 -111103705 - Lx5 LINE L1 -445 5432 5316 2 662 4469 36 0 0 chr12 10153825 10154319 -111103211 + L1Md_T LINE L1 6089 6582 0 2 662 16012 178 43 21 chr12 10154319 10156970 -111100560 - Lx5 LINE L1 -562 5315 2550 2 662 8397 39 3 0 chr12 10156969 10158479 -111099051 - L1Md_F2 LINE L1 0 6582 5069 2 662 1498 170 76 0 chr12 10158475 10158763 -111098767 - Lx5 LINE L1 -3311 2566 2257 2 662 21 71 0 0 chr12 10158882 10158924 -111098606 + AT_rich Low_complexity Low_complexity 1 42 0 2 662 267 31 0 0 chr12 10167008 10167040 -111090490 + (A)n Simple_repeat Simple_repeat 1 32 0 2 662 201 333 0 14 chr12 10170064 10170137 -111087393 - MIR3 SINE MIR -16 192 121 2 662 254 211 104 10 chr12 10170778 10170874 -111086656 - Lx9 LINE L1 -22 7622 7518 2 662 627 95 0 0 chr12 10170877 10170982 -111086548 + (CA)n Simple_repeat Simple_repeat 2 106 0 2 662 465 19 0 0 chr12 10170982 10171035 -111086495 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 662 337 102 34 0 chr12 10171036 10171095 -111086435 - Lx9 LINE L1 -192 7452 7392 2 662 626 189 137 0 chr12 10171093 10171246 -111086284 + Lx9 LINE L1 7211 7384 -260 2 662 24 39 0 38 chr12 10171323 10171338 -111086192 + AT_rich Low_complexity Low_complexity 1 15 0 2 662 2014 161 35 32 chr12 10171338 10171741 -111085789 + Lx3B LINE L1 6569 6972 -1 2 662 24 39 0 38 chr12 10171741 10171778 -111085752 + AT_rich Low_complexity Low_complexity 1 36 0 2 662 26 50 0 0 chr12 10172138 10172178 -111085352 + AT_rich Low_complexity Low_complexity 1 40 0 2 662 881 285 96 7 chr12 10172436 10172729 -111084801 - Lx8 LINE L1 -389 7084 6766 2 662 509 106 0 23 chr12 10172809 10172896 -111084634 + (TCC)n Simple_repeat Simple_repeat 3 87 0 2 662 338 316 0 0 chr12 10172898 10172993 -111084537 - Lx8 LINE L1 -793 6680 6586 2 662 573 55 0 0 chr12 10173422 10173495 -111084035 + (GAAA)n Simple_repeat Simple_repeat 4 76 0 2 662 1347 72 0 0 chr12 10173495 10173675 -111083855 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 662 563 0 15 0 chr12 10173675 10173742 -111083788 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 2 662 3674 94 30 2 chr12 10177257 10177832 -111079698 + L1_Mur1 LINE L1 4483 5073 -813 2 662 892 237 5 0 chr12 10177967 10178153 -111079377 - URR1B DNA MER1_type 0 225 39 2 662 267 103 0 0 chr12 10178276 10178315 -111079215 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 662 582 153 26 32 chr12 10178359 10178514 -111079016 + (CATATA)n Simple_repeat Simple_repeat 1 154 0 2 662 301 290 123 7 chr12 10178613 10178759 -111078771 - L1M2 LINE L1 -500 5800 5638 2 662 426 279 7 0 chr12 10180294 10180441 -111077089 - L1MA5 LINE L1 -6 6294 6147 2 662 345 24 0 0 chr12 10180540 10180582 -111076948 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 662 269 331 14 62 chr12 10180679 10180824 -111076706 + B1F1 SINE Alu 12 149 0 2 662 218 233 233 0 chr12 10180917 10180977 -111076553 - MIR SINE MIR -154 108 35 2 662 363 239 11 11 chr12 10181441 10181534 -111075996 + L1MC1 LINE L1 6221 6313 -20 2 662 942 255 164 85 chr12 10181755 10182132 -111075398 - MTD LTR MaLR -8 411 5 2 662 383 38 0 19 chr12 10182242 10182296 -111075234 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 2 662 258 322 109 58 chr12 10182849 10183123 -111074407 - MER121 Unknown Unknown -34 378 91 2 662 227 300 202 17 chr12 10184507 10184680 -111072850 + MIRc SINE MIR 45 249 -19 2 662 566 225 6 17 chr12 10185572 10185748 -111071782 + (TG)n Simple_repeat Simple_repeat 1 174 0 2 662 201 213 0 0 chr12 10185763 10185810 -111071720 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 662 1121 131 116 0 chr12 10187344 10187543 -111069987 + URR1B DNA MER1_type 1 222 -3 2 662 202 118 29 0 chr12 10187782 10187816 -111069714 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 2 662 187 396 38 16 chr12 10188576 10188761 -111068769 - L2c LINE L2 -71 3316 3128 2 662 27 49 0 32 chr12 10189389 10189429 -111068101 + AT_rich Low_complexity Low_complexity 1 39 0 2 662 354 80 0 0 chr12 10189429 10189479 -111068051 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 662 27 49 0 32 chr12 10189479 10189501 -111068029 + AT_rich Low_complexity Low_complexity 1 22 0 2 662 1645 140 18 11 chr12 10190150 10190432 -111067098 + Lx LINE L1 6370 6653 -1 2 662 275 286 39 13 chr12 10191141 10191219 -111066311 - ID_B1 SINE B4 -8 216 137 2 662 1905 43 4 19 chr12 10191493 10191724 -111065806 + L1Md_F2 LINE L1 5333 5562 -321 2 662 1911 42 0 4 chr12 10191724 10191962 -111065568 + L1Md_A LINE L1 6345 6581 -1 2 662 1905 43 4 19 chr12 10191962 10191988 -111065542 + L1Md_F2 LINE L1 5563 5586 -297 2 662 8068 46 2 2 chr12 10191989 10192983 -111064547 + L1Md_F2 LINE L1 5588 6581 -1 2 662 201 229 0 0 chr12 10193125 10193173 -111064357 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 662 458 338 141 18 chr12 10194468 10194745 -111062785 - MER74B LTR ERVL -74 548 238 2 662 26 30 0 0 chr12 10194816 10194849 -111062681 + AT_rich Low_complexity Low_complexity 1 33 0 2 662 1230 166 0 0 chr12 10195046 10195269 -111062261 + L1_Mur2 LINE L1 4403 4625 -1252 2 662 180 377 35 18 chr12 10195709 10195879 -111061651 - MIRb SINE MIR -68 200 28 2 662 240 293 12 12 chr12 10196882 10196965 -111060565 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 2 662 4432 46 0 0 chr12 10197025 10197590 -111059940 + L1Md_F2 LINE L1 5022 5586 -297 2 662 8194 42 0 2 chr12 10197590 10198583 -111058947 + L1Md_F2 LINE L1 5587 6577 -5 2 662 2013 188 61 10 chr12 10199983 10200376 -111057154 - MTC LTR MaLR -8 413 1 2 662 1142 82 0 0 chr12 10200814 10200960 -111056570 - B1_Mm SINE Alu -1 146 1 2 662 303 269 0 13 chr12 10201494 10201573 -111055957 + GA-rich Low_complexity Low_complexity 2 79 0 2 662 203 271 0 0 chr12 10201572 10201620 -111055910 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 2 662 636 216 82 0 chr12 10202218 10202352 -111055178 + RSINE1 SINE B4 2 146 -19 2 662 246 62 0 0 chr12 10202355 10202387 -111055143 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 662 602 75 0 0 chr12 10202672 10202752 -111054778 + B2_Mm2 SINE B2 2 81 -114 2 662 252 297 20 55 chr12 10202752 10202818 -111054712 + BC1_Mm scRNA scRNA 2 142 -10 2 662 1107 330 21 41 chr12 10203457 10204045 -111053485 + Lx8 LINE L1 6881 7443 -30 2 662 521 344 60 0 chr12 10204141 10204493 -111053037 + L1MA4 LINE L1 5546 5918 -382 2 662 239 106 0 41 chr12 10205599 10205648 -111051882 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 2 662 1805 326 19 12 chr12 10205669 10206406 -111051124 - Lx8 LINE L1 -9 7464 6723 2 662 1785 250 54 36 chr12 10206438 10207157 -111050373 + Lx7 LINE L1 4720 5451 -429 2 662 510 294 39 45 chr12 10207160 10207338 -111050192 + B3A SINE B2 4 180 -18 2 662 1235 89 0 11 chr12 10207439 10207621 -111049909 - L1_Mus3 LINE L1 -217 6421 6242 2 662 716 117 15 15 chr12 10207611 10207741 -111049789 + L1_Mus3 LINE L1 6476 6605 -33 2 662 8885 31 1 2 chr12 10207740 10208849 -111048681 + L1Md_F2 LINE L1 4477 5584 -299 2 662 8001 44 1 3 chr12 10208849 10209827 -111047703 + L1Md_F2 LINE L1 5594 6569 -13 2 662 5118 229 43 53 chr12 10209827 10210214 -111047316 + Lx7 LINE L1 5561 5925 -1771 2 662 228 224 65 13 chr12 10210271 10210348 -111047182 + Lx7 LINE L1 6139 6219 -1254 2 662 358 297 161 9 chr12 10210383 10210594 -111046936 + Lx7 LINE L1 6451 6693 -780 2 662 2419 123 5 8 chr12 10212327 10212720 -111044810 + L1_Mm LINE L1 5267 5658 -225 2 662 440 269 26 9 chr12 10213168 10213284 -111044246 + B1_Mur2 SINE Alu 32 149 0 2 662 337 118 0 50 chr12 10213646 10213726 -111043804 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 2 662 189 0 0 0 chr12 10213743 10213764 -111043766 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 662 505 101 0 20 chr12 10213764 10213865 -111043665 + (GA)n Simple_repeat Simple_repeat 1 99 0 2 662 315 0 0 0 chr12 10214028 10214063 -111043467 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 2 662 3314 87 31 8 chr12 10214589 10215075 -111042455 - L1_Mus3 LINE L1 -1 6637 6141 2 662 4802 77 19 56 chr12 10215081 10215798 -111041732 - L1_Mus1 LINE L1 -1 6566 5876 2 662 272 202 48 0 chr12 10215997 10216081 -111041449 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 662 239 365 171 39 chr12 10216090 10216506 -111041024 - L2a LINE L2 -18 3408 2938 2 662 427 323 17 72 chr12 10216565 10216745 -111040785 + MIR3 SINE MIR 33 202 -6 2 662 21 0 0 0 chr12 10218066 10218087 -111039443 + AT_rich Low_complexity Low_complexity 1 21 0 2 662 193 333 29 0 chr12 10218222 10218291 -111039239 + MIRb SINE MIR 114 184 -84 2 662 296 379 55 18 chr12 10218291 10218509 -111039021 + MIR SINE MIR 11 236 -26 2 662 234 0 0 0 chr12 10218964 10218990 -111038540 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 662 1113 101 0 0 chr12 10219085 10219233 -111038297 - B1_Mus1 SINE Alu 0 148 1 2 662 4877 231 35 77 chr12 10219318 10220095 -111037435 + Lx7 LINE L1 6235 7019 -677 2 662 200 35 35 0 chr12 10220095 10220124 -111037406 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 662 4877 231 35 77 chr12 10220124 10220870 -111036660 + Lx7 LINE L1 7020 7695 -1 2 662 6410 131 19 19 chr12 10221163 10222433 -111035097 + Lx LINE L1 5370 6639 -15 2 662 1423 73 10 10 chr12 10222434 10222627 -111034903 + B2_Mm2 SINE B2 2 194 -1 2 662 438 114 0 0 chr12 10222627 10222697 -111034833 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 662 318 321 113 64 chr12 10222940 10223113 -111034417 + HAL1 LINE L1 1117 1312 -1195 2 662 900 241 5 10 chr12 10223113 10223318 -111034212 + B3 SINE B2 4 207 -9 2 662 318 321 113 64 chr12 10223318 10223410 -111034120 + HAL1 LINE L1 1313 1394 -1113 2 82 314 298 188 36 chr12 10223533 10223954 -111033576 + HAL1 LINE L1 1549 2033 -474 2 663 267 93 0 0 chr12 10224090 10224133 -111033397 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 663 330 26 0 0 chr12 10224133 10224172 -111033358 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 2 663 281 302 75 66 chr12 10224186 10224244 -111033286 + HAL1 LINE L1 2268 2329 -178 2 663 741 271 43 5 chr12 10224244 10224455 -111033075 + Charlie17a DNA MER1_type 1 219 0 3 663 281 302 75 66 chr12 10224455 10224623 -111032907 + HAL1 LINE L1 2330 2496 -11 2 663 2047 4 0 0 chr12 10224868 10225099 -111032431 + L1Md_A LINE L1 6352 6582 0 3 663 753 323 150 3 chr12 10225579 10225933 -111031597 + MLT1A1 LTR MaLR 3 408 0 3 663 239 157 56 56 chr12 10227336 10227390 -111030140 + RLTR22_Mur LTR ERVK 1104 1157 -691 3 663 203 161 0 0 chr12 10228297 10228328 -111029202 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 663 285 197 0 0 chr12 10230443 10230509 -111027021 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 663 25 0 0 0 chr12 10231726 10231751 -111025779 + AT_rich Low_complexity Low_complexity 1 25 0 3 663 21 71 0 0 chr12 10231852 10231894 -111025636 + AT_rich Low_complexity Low_complexity 1 42 0 3 663 647 285 151 16 chr12 10231911 10232400 -111025130 - Lx9 LINE L1 -4 7640 7086 3 663 275 0 0 28 chr12 10232775 10232811 -111024719 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 663 534 273 75 59 chr12 10232874 10233061 -111024469 - B3A SINE B2 0 198 9 3 663 2931 83 5 10 chr12 10233066 10233468 -111024062 - MTB LTR MaLR 0 400 1 3 663 203 356 69 0 chr12 10233789 10233890 -111023640 - MIR SINE MIR -147 115 8 3 663 1148 293 33 11 chr12 10234175 10234630 -111022900 + L1ME1 LINE L1 5562 6026 -153 3 663 594 0 0 0 chr12 10235012 10235078 -111022452 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 663 228 182 0 0 chr12 10235899 10235943 -111021587 + GA-rich Low_complexity Low_complexity 1 44 0 3 663 284 96 0 37 chr12 10235965 10236019 -111021511 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 3 663 2758 241 54 6 chr12 10236048 10236673 -111020857 + Lx6 LINE L1 6805 7459 -1 3 663 374 336 104 25 chr12 10237274 10237434 -111020096 + ID_B1 SINE B4 71 236 -56 3 663 559 313 146 26 chr12 10240840 10241148 -111016382 - MLT1A0 LTR MaLR -2 363 19 3 663 591 318 36 0 chr12 10241428 10241620 -111015910 + L1MEd LINE L1 478 676 -5443 3 663 23 33 0 0 chr12 10241811 10241841 -111015689 + AT_rich Low_complexity Low_complexity 1 30 0 3 663 739 31 20 0 chr12 10241922 10242020 -111015510 + (TC)n Simple_repeat Simple_repeat 1 100 0 3 663 5670 238 24 23 chr12 10242099 10243480 -111014050 - Lx7 LINE L1 -293 7403 6022 3 663 21 0 0 0 chr12 10243972 10243993 -111013537 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 248 359 129 14 chr12 10244245 10244392 -111013138 + RSINE1 SINE B4 2 165 0 3 663 318 254 59 44 chr12 10244585 10244721 -111012809 + MER5A1 DNA MER1_type 23 160 -6 3 663 804 321 74 11 chr12 10244745 10245016 -111012514 + B4A SINE B4 5 292 0 3 663 613 357 58 15 chr12 10245042 10245301 -111012229 - B4A SINE B4 -2 290 21 3 663 672 318 9 32 chr12 10245342 10245395 -111012135 - B3 SINE B2 0 216 164 3 663 492 86 0 0 chr12 10245395 10245465 -111012065 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 663 672 318 9 32 chr12 10245465 10245551 -111011979 - B3 SINE B2 -53 163 79 3 663 1045 80 0 0 chr12 10245551 10245689 -111011841 + B1_Mm SINE Alu 1 138 -9 3 663 231 61 0 0 chr12 10245689 10245722 -111011808 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 663 672 318 9 32 chr12 10245722 10245801 -111011729 - B3 SINE B2 -138 78 2 3 663 29 113 0 0 chr12 10245810 10245951 -111011579 + AT_rich Low_complexity Low_complexity 1 141 0 3 663 364 200 318 0 chr12 10245951 10246036 -111011494 - B3 SINE B2 -57 159 48 3 663 427 322 48 27 chr12 10246057 10246204 -111011326 + RSINE1 SINE B4 2 151 -14 3 663 399 56 0 0 chr12 10246208 10246262 -111011268 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 663 423 0 0 0 chr12 10246262 10246309 -111011221 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 663 244 319 17 8 chr12 10246594 10246711 -111010819 + HAL1b LINE L1 1473 1590 -419 3 663 1083 75 0 7 chr12 10247050 10247198 -111010332 - B1_Mus2 SINE Alu 0 147 1 3 663 39 88 0 0 chr12 10248716 10248818 -111008712 + AT_rich Low_complexity Low_complexity 1 102 0 3 663 204 67 0 0 chr12 10249199 10249229 -111008301 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 3 663 240 35 0 0 chr12 10249227 10249256 -111008274 + (T)n Simple_repeat Simple_repeat 1 29 0 3 663 5622 81 1 23 chr12 10249377 10250242 -111007288 + L1Md_Gf LINE L1 400 1347 -5313 3 663 5479 115 19 1 chr12 10250255 10251426 -111006104 - L1Md_F LINE L1 -4330 1553 330 3 663 481 263 71 101 chr12 10251980 10252348 -111005182 - L1MB3 LINE L1 -13 6170 5814 3 663 1021 91 0 0 chr12 10252356 10252499 -111005031 - B1_Mus1 SINE Alu 0 148 6 3 663 282 289 73 9 chr12 10252507 10252684 -111004846 - L1MD LINE L1 -381 5803 5609 3 663 2136 150 35 27 chr12 10253934 10254338 -111003192 - MTB_Mm LTR MaLR 0 407 1 3 663 204 360 0 13 chr12 10254671 10254747 -111002783 - L2a LINE L2 -44 3382 3308 3 663 198 0 0 0 chr12 10255483 10255505 -111002025 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 3 663 426 39 0 0 chr12 10258687 10258739 -110998791 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 663 990 167 0 0 chr12 10259532 10259712 -110997818 + CT-rich Low_complexity Low_complexity 1 180 0 3 663 1368 120 5 0 chr12 10259787 10259996 -110997534 - Lx2 LINE L1 0 6997 6788 3 663 349 385 0 0 chr12 10260918 10261066 -110996464 + RSINE1 SINE B4 2 149 -16 3 663 396 0 0 0 chr12 10261072 10261116 -110996414 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 663 282 29 0 0 chr12 10261116 10261150 -110996380 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 663 396 0 0 0 chr12 10261309 10261353 -110996177 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 663 409 202 50 8 chr12 10261358 10261478 -110996052 + Lx9 LINE L1 7520 7644 0 3 663 23 54 0 0 chr12 10261478 10261515 -110996015 + AT_rich Low_complexity Low_complexity 1 37 0 3 663 623 295 18 50 chr12 10261670 10261888 -110995642 - B3A SINE B2 -2 214 4 3 663 466 338 24 24 chr12 10261932 10262141 -110995389 + B4A SINE B4 3 211 -81 3 663 218 317 0 12 chr12 10262285 10262368 -110995162 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 3 663 367 322 94 66 chr12 10262393 10262694 -110994836 + MLT1D LTR MaLR 281 502 -3 3 663 198 0 0 0 chr12 10264803 10264825 -110992705 + (TTG)n Simple_repeat Simple_repeat 3 24 0 3 663 2750 64 11 6 chr12 10265036 10265398 -110992132 - L1Md_F2 LINE L1 0 6582 6219 3 663 460 311 123 15 chr12 10265543 10265804 -110991726 - HAL1 LINE L1 -381 2126 1838 3 663 473 92 0 75 chr12 10265816 10265922 -110991608 + CT-rich Low_complexity Low_complexity 3 100 0 3 663 355 327 89 28 chr12 10266343 10266557 -110990973 - HAL1 LINE L1 -731 1776 1550 3 663 546 203 0 0 chr12 10267038 10267161 -110990369 + (TG)n Simple_repeat Simple_repeat 2 124 0 3 663 3368 33 0 5 chr12 10267195 10267593 -110989937 + MTA_Mm LTR MaLR 1 396 0 3 663 341 342 8 0 chr12 10267606 10267723 -110989807 + ID_B1 SINE B4 91 208 -16 3 663 376 338 112 43 chr12 10267724 10268464 -110989066 - HAL1 LINE L1 -1655 852 62 3 663 3199 75 2 16 chr12 10271440 10271873 -110985657 - L1_Mus2 LINE L1 -1 6565 6139 3 663 242 160 20 0 chr12 10272352 10272402 -110985128 + (CATA)n Simple_repeat Simple_repeat 1 51 0 3 663 851 225 22 31 chr12 10272816 10273041 -110984489 + ID_B1 SINE B4 2 224 0 3 663 275 326 202 40 chr12 10273195 10273393 -110984137 - MER21B LTR ERV1 -30 833 604 3 663 650 316 59 22 chr12 10273570 10274062 -110983468 - L1M3 LINE L1 -840 5300 4791 3 663 275 295 184 18 chr12 10274207 10274321 -110983209 - MER21B LTR ERV1 -514 349 217 3 663 499 341 71 7 chr12 10274777 10274919 -110982611 + B3A SINE B2 1 155 -43 3 663 465 19 0 0 chr12 10274919 10274973 -110982557 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 663 499 341 49 0 chr12 10274973 10275009 -110982521 + B3A SINE B2 156 195 -3 3 663 439 292 52 71 chr12 10275792 10275947 -110981583 + B3A SINE B2 2 153 -45 3 663 355 189 0 40 chr12 10275959 10276058 -110981472 + CT-rich Low_complexity Low_complexity 1 95 0 3 663 587 229 82 40 chr12 10276146 10276330 -110981200 + B3 SINE B2 6 188 -7 3 663 22 35 0 0 chr12 10277149 10277178 -110980352 + AT_rich Low_complexity Low_complexity 1 29 0 3 663 618 263 140 64 chr12 10277268 10277532 -110979998 - B4A SINE B4 -8 284 1 3 663 571 291 30 13 chr12 10278323 10278560 -110978970 - L1M2 LINE L1 -1098 5045 4785 3 663 1260 254 32 44 chr12 10278821 10279249 -110978281 - L1MB7 LINE L1 -340 5900 5469 3 663 311 248 89 104 chr12 10279249 10279384 -110978146 - MIRb SINE MIR -75 193 61 3 663 238 360 102 30 chr12 10279703 10279869 -110977661 - MIRb SINE MIR 0 268 91 3 663 720 328 101 22 chr12 10280609 10280974 -110976556 - MER70A LTR ERVL -11 461 68 3 663 234 91 0 0 chr12 10280977 10281010 -110976520 + (CAT)n Simple_repeat Simple_repeat 2 34 0 3 663 310 217 23 10 chr12 10281016 10281112 -110976418 - Lx2B LINE L1 -5 7053 6903 3 663 1442 199 37 12 chr12 10281107 10281432 -110976098 - Lx2B LINE L1 -737 6263 5931 3 663 429 20 0 0 chr12 10284654 10284704 -110972826 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 663 5696 250 38 43 chr12 10284909 10285131 -110972399 - Lx7 LINE L1 0 7696 7486 3 663 758 11 0 11 chr12 10285131 10285223 -110972307 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 3 663 5696 250 38 43 chr12 10285223 10286509 -110971021 - Lx7 LINE L1 -211 7485 6196 3 663 218 32 0 31 chr12 10286514 10286546 -110970984 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 663 21 57 0 0 chr12 10286558 10286593 -110970937 + AT_rich Low_complexity Low_complexity 1 35 0 3 663 212 267 172 45 chr12 10286958 10287115 -110970415 + L2a LINE L2 3183 3359 -67 3 663 329 129 0 0 chr12 10287409 10287471 -110970059 - L1Md_F2 LINE L1 -2 6580 6519 3 663 636 14 0 0 chr12 10288505 10288578 -110968952 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 663 276 77 0 0 chr12 10288578 10288616 -110968914 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 663 225 325 48 0 chr12 10289022 10289105 -110968425 + PB1D9 SINE Alu 2 88 -32 3 663 632 288 0 39 chr12 10289438 10289644 -110967886 + B3A SINE B2 1 198 0 4 663 184 246 81 14 chr12 10290372 10290446 -110967084 - MIR SINE MIR -161 101 23 4 663 528 299 22 47 chr12 10291239 10291525 -110966005 + L1MA5 LINE L1 5643 5897 -1799 4 663 26 0 0 0 chr12 10292004 10292030 -110965500 + AT_rich Low_complexity Low_complexity 1 26 0 4 663 985 317 21 17 chr12 10292091 10292380 -110965150 - B4A SINE B4 -2 290 1 4 663 213 65 0 0 chr12 10292446 10292477 -110965053 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 663 806 289 149 30 chr12 10292744 10293074 -110964456 + Lx8 LINE L1 6907 7293 -180 4 663 360 0 0 0 chr12 10293074 10293114 -110964416 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 663 639 0 0 0 chr12 10293114 10293184 -110964346 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 663 806 285 159 28 chr12 10293184 10293333 -110964197 + Lx8 LINE L1 7294 7467 -6 4 663 369 351 87 12 chr12 10293643 10293885 -110963645 + Kanga11a DNA Tc2 588 847 -123 4 663 810 131 0 0 chr12 10295025 10295193 -110962337 + (TC)n Simple_repeat Simple_repeat 2 169 0 4 663 216 67 0 0 chr12 10295200 10295230 -110962300 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 663 229 303 13 26 chr12 10295421 10295499 -110962031 - B4A SINE B4 -197 95 19 4 663 24 0 0 0 chr12 10295643 10295667 -110961863 + AT_rich Low_complexity Low_complexity 1 24 0 4 663 316 331 83 51 chr12 10296064 10296220 -110961310 + HAL1-3A_ME LINE L1 2279 2439 -419 4 663 276 307 0 29 chr12 10296220 10296324 -110961206 + GA-rich Low_complexity Low_complexity 2 102 0 4 663 554 328 104 67 chr12 10296380 10296402 -110961128 - MTE2b LTR MaLR -20 359 339 4 663 273 29 0 0 chr12 10296402 10296436 -110961094 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 663 703 295 136 35 chr12 10296436 10296759 -110960771 - MTE2b LTR MaLR -41 338 1 4 663 1134 116 11 11 chr12 10297023 10297206 -110960324 - B2_Mm1t SINE B2 -9 184 2 4 663 452 89 13 0 chr12 10297360 10297439 -110960091 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 663 861 292 25 33 chr12 10297455 10297699 -110959831 - B4A SINE B4 0 292 51 4 663 186 43 0 0 chr12 10298357 10298380 -110959150 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 663 412 278 24 30 chr12 10298559 10298726 -110958804 + GA-rich Low_complexity Low_complexity 3 168 0 4 663 33 25 0 0 chr12 10300210 10300250 -110957280 + AT_rich Low_complexity Low_complexity 1 40 0 4 663 5863 49 18 0 chr12 10300798 10301534 -110955996 + L1Md_F2 LINE L1 5820 6568 -14 4 663 707 33 0 11 chr12 10301919 10302010 -110955520 + (TCCC)n Simple_repeat Simple_repeat 3 92 0 4 663 225 203 0 0 chr12 10302017 10302064 -110955466 + CT-rich Low_complexity Low_complexity 13 59 0 4 663 231 36 0 0 chr12 10302064 10302092 -110955438 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 663 225 203 0 0 chr12 10302092 10302103 -110955427 + polypyrimidine Low_complexity Low_complexity 2 12 0 4 663 249 286 0 0 chr12 10302104 10302167 -110955363 + CT-rich Low_complexity Low_complexity 3 65 0 4 663 209 283 50 0 chr12 10302500 10302599 -110954931 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 4 663 226 217 0 0 chr12 10302549 10302595 -110954935 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 4 663 531 345 61 35 chr12 10303676 10303968 -110953562 + MLT1C LTR MaLR 12 314 -153 4 663 261 0 0 0 chr12 10303968 10303997 -110953533 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 663 531 345 61 35 chr12 10303997 10304079 -110953451 + MLT1C LTR MaLR 315 396 -71 4 663 200 284 135 0 chr12 10304491 10304565 -110952965 - MIR SINE MIR -57 151 68 4 663 2001 87 29 0 chr12 10304795 10305070 -110952460 + L1VL1 LINE L1 175 457 -5965 4 663 299 356 99 20 chr12 10305833 10305985 -110951545 - RSINE1 SINE B4 0 165 2 4 663 426 288 60 67 chr12 10306382 10306531 -110950999 + B1F SINE Alu 2 149 0 4 663 231 235 0 0 chr12 10307605 10307703 -110949827 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 663 309 242 16 0 chr12 10308514 10308576 -110948954 + ID4_ SINE ID 15 77 -6 4 663 276 298 24 12 chr12 10308521 10308606 -110948924 + ID_B1 SINE B4 23 108 -116 4 663 234 206 0 0 chr12 10308606 10308674 -110948856 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 663 617 58 12 0 chr12 10310631 10310717 -110946813 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 4 663 21 36 0 0 chr12 10310783 10310811 -110946719 + AT_rich Low_complexity Low_complexity 1 28 0 4 663 24 0 0 0 chr12 10310890 10310914 -110946616 + AT_rich Low_complexity Low_complexity 1 24 0 4 663 791 253 22 5 chr12 10311963 10312185 -110945345 + URR1A DNA MER1_type 1 226 0 4 663 216 97 0 0 chr12 10312270 10312301 -110945229 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 663 202 290 71 53 chr12 10313918 10314031 -110943499 - MIR SINE MIR -62 200 86 4 663 204 40 0 0 chr12 10314313 10314338 -110943192 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 663 315 0 0 0 chr12 10315059 10315094 -110942436 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 663 483 18 0 0 chr12 10315221 10315277 -110942253 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 663 199 232 167 42 chr12 10316084 10316156 -110941374 - MIRb SINE MIR -66 202 122 4 663 1235 66 0 0 chr12 10316443 10316595 -110940935 + L1Md_F2 LINE L1 5438 5589 -294 4 663 7671 58 11 3 chr12 10316595 10317566 -110939964 + L1Md_F2 LINE L1 5591 6569 -13 4 663 216 122 0 0 chr12 10317720 10317761 -110939769 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 663 280 279 200 12 chr12 10317766 10317926 -110939604 - L1M5 LINE L1 -606 5556 5367 4 663 23 33 0 0 chr12 10319292 10319322 -110938208 + AT_rich Low_complexity Low_complexity 1 30 0 4 663 244 313 131 11 chr12 10319462 10319730 -110937800 - L1MEa LINE L1 -4767 1409 1110 4 663 761 278 65 29 chr12 10319775 10320053 -110937477 - B4A SINE B4 0 292 5 4 663 423 322 43 71 chr12 10320057 10320311 -110937219 - L1MEa LINE L1 -4997 1073 827 4 663 988 92 0 30 chr12 10320862 10321031 -110936499 - L1Md_F2 LINE L1 0 6582 6419 4 663 495 0 0 0 chr12 10321904 10321959 -110935571 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 663 262 305 171 0 chr12 10321972 10322054 -110935476 - B3 SINE B2 -67 149 54 4 663 237 331 162 0 chr12 10322108 10322256 -110935274 - MER58B DNA MER1_type -31 310 139 4 663 15100 128 15 24 chr12 10322854 10325914 -110931616 + L1_Mus2 LINE L1 591 3652 -2231 4 663 845 66 33 0 chr12 10325928 10326050 -110931480 - L1_Mus1 LINE L1 -28 6539 6414 4 663 7077 99 4 2 chr12 10326053 10327689 -110929841 + L1_Mus2 LINE L1 4923 6563 -3 4 663 462 189 0 0 chr12 10327984 10328058 -110929472 + L1VL1 LINE L1 1 74 -6348 4 663 4186 125 75 25 chr12 10328058 10328779 -110928751 + L1Md_F2 LINE L1 480 1236 -5380 4 663 8350 76 15 4 chr12 10331998 10333122 -110924408 + L1Md_F2 LINE L1 4450 5586 -297 4 663 7884 62 0 2 chr12 10333130 10334124 -110923406 + L1Md_F2 LINE L1 5589 6580 -2 4 663 200 59 29 0 chr12 10335019 10335053 -110922477 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 663 625 162 188 0 chr12 10335053 10335161 -110922369 - B1_Mus2 SINE Alu -8 139 10 4 663 320 298 131 8 chr12 10335161 10335175 -110922355 - B4 SINE B4 -75 217 81 4 663 522 0 0 0 chr12 10335285 10335343 -110922187 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 663 238 329 0 24 chr12 10335480 10335564 -110921966 + ID2 SINE ID 2 83 0 4 663 21 57 0 0 chr12 10336042 10336077 -110921453 + AT_rich Low_complexity Low_complexity 1 35 0 4 663 207 0 0 0 chr12 10337416 10337439 -110920091 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 4 663 573 344 29 32 chr12 10338944 10339223 -110918307 + B4A SINE B4 5 282 -10 4 663 348 127 0 0 chr12 10340117 10340172 -110917358 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 663 729 301 49 15 chr12 10340226 10340492 -110917038 - Lx9 LINE L1 -274 7370 7096 4 663 774 304 85 52 chr12 10342091 10342362 -110915168 + B4A SINE B4 9 288 -4 4 663 578 347 34 10 chr12 10343304 10343539 -110913991 + MLT1E LTR MaLR 385 631 -49 4 663 227 336 27 36 chr12 10343947 10344037 -110913493 + RMER15 LTR ERVL 25 113 -462 4 663 2095 198 62 73 chr12 10344037 10344628 -110912902 + RLTR31_Mm LTR ERVK 1 519 -38 4 663 303 240 79 13 chr12 10344626 10344702 -110912828 + RLTR17 LTR ERVK 612 692 0 4 663 275 273 26 13 chr12 10344747 10344825 -110912705 + RMER15 LTR ERVL 199 277 -298 4 663 503 233 88 55 chr12 10345452 10345634 -110911896 + B3A SINE B2 3 190 -8 4 663 1119 179 36 14 chr12 10345788 10346009 -110911521 + URR1A DNA MER1_type 1 226 0 4 663 434 288 121 67 chr12 10346009 10346158 -110911372 + B3A SINE B2 3 159 -39 4 663 261 83 0 0 chr12 10346219 10346255 -110911275 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 663 369 0 0 0 chr12 10346255 10346295 -110911235 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 663 25 31 0 0 chr12 10346295 10346327 -110911203 + AT_rich Low_complexity Low_complexity 1 32 0 4 663 40 59 0 0 chr12 10346371 10346439 -110911091 + AT_rich Low_complexity Low_complexity 1 68 0 4 663 25 65 0 0 chr12 10346488 10346534 -110910996 + AT_rich Low_complexity Low_complexity 1 46 0 4 663 228 296 12 0 chr12 10346622 10346703 -110910827 - L1MA8 LINE L1 -170 6121 6040 4 663 485 311 16 38 chr12 10346862 10347046 -110910484 - B3A SINE B2 -16 182 3 4 663 308 272 127 70 chr12 10347506 10347664 -110909866 - MIRb SINE MIR -101 167 1 4 663 772 358 80 45 chr12 10348241 10348703 -110908827 - MLT2B1 LTR ERVL -28 492 15 4 663 30668 88 13 4 chr12 10349186 10350817 -110906713 - L1_Mus1 LINE L1 0 6567 4927 4 663 1209 34 0 0 chr12 10350817 10350963 -110906567 + B1_Mus2 SINE Alu 2 147 0 4 82 30668 119 21 14 chr12 10350963 10355473 -110902057 - L1_Mus1 LINE L1 -957 4926 380 4 664 409 69 0 0 chr12 10355482 10355540 -110901990 - L1_Mus2 LINE L1 -9 6557 6500 4 664 590 309 132 28 chr12 10355767 10356084 -110901446 + MLT1C LTR MaLR 1 350 -117 4 664 512 261 103 19 chr12 10356261 10356417 -110901113 - MTE2b LTR MaLR -210 169 1 4 664 830 269 58 19 chr12 10357857 10358115 -110899415 - MLT1B LTR MaLR -6 384 117 4 664 871 239 31 21 chr12 10358188 10358380 -110899150 - B3 SINE B2 -20 196 3 4 664 1369 321 145 23 chr12 10359084 10359842 -110897688 - Lx8 LINE L1 -201 7272 6423 5 664 558 43 0 0 chr12 10359946 10360015 -110897515 + (TCCC)n Simple_repeat Simple_repeat 4 72 0 5 664 23 0 0 0 chr12 10360303 10360326 -110897204 + AT_rich Low_complexity Low_complexity 1 23 0 5 664 345 294 108 0 chr12 10360853 10360955 -110896575 + B1F2 SINE Alu 16 128 -21 5 664 684 83 0 0 chr12 10361000 10361096 -110896434 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 5 664 190 56 56 0 chr12 10361177 10361213 -110896317 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 664 309 328 122 14 chr12 10362284 10362423 -110895107 - HAL1-3A_ME LINE L1 -422 2436 2283 5 664 183 80 0 0 chr12 10362636 10362661 -110894869 + (TTG)n Simple_repeat Simple_repeat 2 26 0 5 664 220 184 26 0 chr12 10362669 10362707 -110894823 - ID4 SINE ID -44 39 1 5 664 488 239 208 11 chr12 10365133 10365311 -110892219 - B3 SINE B2 0 216 4 5 664 216 56 122 11 chr12 10366054 10366144 -110891386 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 664 315 344 16 16 chr12 10366239 10366425 -110891105 + L1MC4 LINE L1 6518 6703 -1339 5 664 2341 46 0 0 chr12 10369121 10369404 -110888126 + L1Md_F2 LINE L1 6018 6300 -282 5 664 306 315 19 0 chr12 10370154 10370262 -110887268 + PB1D10 SINE Alu 1 110 -7 5 664 545 106 0 14 chr12 10370510 10370609 -110886921 + B1_Mm SINE Alu 27 147 0 5 664 1161 78 0 0 chr12 10370628 10370807 -110886723 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 5 664 627 26 0 0 chr12 10370809 10370886 -110886644 + (GAAAA)n Simple_repeat Simple_repeat 1 77 0 5 664 865 261 136 6 chr12 10371084 10371408 -110886122 - L1MD1 LINE L1 -103 6139 5774 5 664 186 290 32 16 chr12 10371427 10371490 -110886040 + MER5A DNA MER1_type 125 188 -1 5 664 262 184 0 0 chr12 10371554 10371603 -110885927 + PB1D10 SINE Alu 42 90 -27 5 664 529 304 55 18 chr12 10371611 10371775 -110885755 + B3A SINE B2 1 170 -28 5 664 1691 160 3 0 chr12 10372208 10372490 -110885040 - Lx LINE L1 -7 6647 6365 5 664 278 344 91 19 chr12 10372854 10373008 -110884522 - L2 LINE L2 -703 2716 2552 5 664 198 0 0 0 chr12 10375201 10375223 -110882307 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 5 664 581 315 54 14 chr12 10375538 10375760 -110881770 - B4A SINE B4 -61 231 1 5 664 381 43 0 0 chr12 10376308 10376355 -110881175 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 664 456 19 0 0 chr12 10376900 10376953 -110880577 + (TGAG)n Simple_repeat Simple_repeat 3 55 0 5 664 3236 51 7 44 chr12 10379893 10380327 -110877203 - L1_Mus2 LINE L1 0 6566 6149 5 664 408 55 0 0 chr12 10380327 10380382 -110877148 + MusHAL1 LINE L1 214 268 -2444 5 664 681 53 0 0 chr12 10380979 10381074 -110876456 + L1_Mus2 LINE L1 6471 6565 -1 5 664 407 296 97 38 chr12 10383009 10383124 -110874406 + B3A SINE B2 2 123 -75 5 664 872 160 182 0 chr12 10383124 10383311 -110874219 + URR1B DNA MER1_type 5 225 0 5 664 407 296 97 38 chr12 10383311 10383381 -110874149 + B3A SINE B2 124 197 -1 5 664 386 156 0 43 chr12 10383616 10383710 -110873820 - Lx2 LINE L1 -2 6995 6906 5 664 510 96 0 0 chr12 10384525 10384598 -110872932 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 664 285 29 0 0 chr12 10384598 10384632 -110872898 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 664 289 0 49 0 chr12 10385428 10385469 -110872061 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 664 5371 46 9 5 chr12 10385917 10386590 -110870940 - L1Md_F3 LINE L1 0 6584 5909 5 664 439 345 87 28 chr12 10388939 10389294 -110868236 - L1M4 LINE L1 -2019 4127 3752 5 664 392 55 18 0 chr12 10389312 10389367 -110868163 + (TATG)n Simple_repeat Simple_repeat 1 56 0 5 664 25 65 0 0 chr12 10389514 10389560 -110867970 + AT_rich Low_complexity Low_complexity 1 46 0 5 664 497 286 13 85 chr12 10389605 10389653 -110867877 - RSINE1 SINE B4 -21 144 101 5 664 1756 161 11 116 chr12 10389653 10390111 -110867419 + RMER17C LTR ERVK 1 410 0 5 664 497 286 13 85 chr12 10390111 10390215 -110867315 - RSINE1 SINE B4 -65 100 3 5 664 302 267 94 98 chr12 10390239 10390505 -110867025 - L1M4 LINE L1 -2685 3461 3197 5 664 406 323 81 66 chr12 10390589 10390921 -110866609 - L1MD LINE L1 -3198 2948 2612 5 664 432 0 0 0 chr12 10390930 10390978 -110866552 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 664 413 316 146 0 chr12 10390979 10391137 -110866393 - B4A SINE B4 -22 270 90 5 664 213 283 0 62 chr12 10391081 10391145 -110866385 - B1_Mur4 SINE Alu -89 61 2 5 664 821 184 17 3 chr12 10391156 10391316 -110866214 - B2_Mm2 SINE B2 -46 170 1 5 664 272 229 97 28 chr12 10391316 10391376 -110866154 - B4A SINE B4 -203 89 25 5 664 1933 178 102 5 chr12 10391520 10391904 -110865626 - MTC LTR MaLR 0 421 1 5 664 5290 177 47 31 chr12 10391904 10392985 -110864545 - MTC-int LTR MaLR 0 1258 161 5 664 3261 213 28 14 chr12 10393010 10393735 -110863795 - Lx5 LINE L1 -11 7039 6305 5 664 1688 197 71 48 chr12 10393728 10394207 -110863323 + Lx5 LINE L1 5816 6305 -745 5 664 611 226 30 0 chr12 10394214 10394347 -110863183 - MTC-int LTR MaLR -1083 175 39 5 664 214 191 0 56 chr12 10394367 10394384 -110863146 + (TTTG)n Simple_repeat Simple_repeat 2 16 0 5 664 210 71 0 0 chr12 10394384 10394412 -110863118 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 5 664 214 191 0 56 chr12 10394412 10394418 -110863112 + (TTTG)n Simple_repeat Simple_repeat 4 9 0 5 664 333 68 0 0 chr12 10394418 10394462 -110863068 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 664 214 191 0 56 chr12 10394462 10394509 -110863021 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 5 664 1531 195 124 28 chr12 10394510 10394874 -110862656 - MTC LTR MaLR -20 401 3 5 664 242 329 44 66 chr12 10394874 10394898 -110862632 - B1F1 SINE Alu -59 90 72 5 664 2151 112 11 75 chr12 10394898 10395178 -110862352 + ORR1A2 LTR MaLR 1 283 -44 5 664 997 66 80 0 chr12 10395178 10395315 -110862215 + B1_Mus1 SINE Alu 1 148 0 5 664 2151 112 11 75 chr12 10395315 10395383 -110862147 + ORR1A2 LTR MaLR 284 327 0 5 664 242 329 44 66 chr12 10395383 10395449 -110862081 - B1F1 SINE Alu -78 71 2 5 664 360 185 0 58 chr12 10395710 10395779 -110861751 + RSINE1 SINE B4 3 67 -98 5 664 492 18 0 0 chr12 10396475 10396532 -110860998 + (TTGG)n Simple_repeat Simple_repeat 2 58 0 5 664 200 59 29 0 chr12 10398413 10398447 -110859083 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 664 311 350 63 0 chr12 10398567 10398710 -110858820 - MIRb SINE MIR -16 252 101 5 664 446 192 48 9 chr12 10399003 10399108 -110858422 - MER119 DNA MER1_type -223 360 252 5 664 333 0 0 0 chr12 10399971 10400008 -110857522 + (A)n Simple_repeat Simple_repeat 1 37 0 5 664 21 0 0 0 chr12 10404596 10404617 -110852913 + AT_rich Low_complexity Low_complexity 1 21 0 5 664 472 319 77 35 chr12 10404649 10404792 -110852738 - RSINE1 SINE B4 -7 158 10 5 664 466 322 27 0 chr12 10405843 10405992 -110851538 + RMER30 DNA MER1_type 49 201 -1 5 664 231 309 131 90 chr12 10406596 10406863 -110850667 + Tigger13a DNA MER2_type 494 771 0 5 664 457 329 42 7 chr12 10408474 10408618 -110848912 + RSINE1 SINE B4 9 157 -8 5 664 247 299 92 37 chr12 10408618 10408635 -110848895 + B2_Mm1a SINE B2 8 177 -16 5 664 261 57 0 0 chr12 10408782 10408817 -110848713 + (T)n Simple_repeat Simple_repeat 1 35 0 5 664 1130 88 0 0 chr12 10408817 10408965 -110848565 - B1_Mus1 SINE Alu 0 148 1 5 664 941 164 47 30 chr12 10408991 10409224 -110848306 + Lx7 LINE L1 7453 7689 -7 5 664 600 276 86 0 chr12 10409290 10409442 -110848088 + ID_B1 SINE B4 9 173 -51 5 664 2278 221 30 60 chr12 10410460 10411063 -110846467 - Lx2B LINE L1 -14 6986 6402 5 664 2243 156 11 14 chr12 10411059 10411502 -110846028 + Lx2B LINE L1 5973 6414 -586 5 664 368 295 149 28 chr12 10414291 10414612 -110842918 + L1MEd LINE L1 959 1318 -4924 5 664 320 227 155 78 chr12 10414638 10414767 -110842763 + HAL1-3A_ME LINE L1 1975 2113 -745 5 664 324 48 0 0 chr12 10415555 10415597 -110841933 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 664 1470 199 79 32 chr12 10415728 10416071 -110841459 + RMER16 LTR ERVK 91 449 -84 5 664 870 168 10 106 chr12 10416300 10416507 -110841023 - ORR1A4 LTR MaLR -140 189 3 5 664 1203 34 0 14 chr12 10416636 10416647 -110840883 - B1_Mm SINE Alu 0 147 138 5 664 225 0 0 0 chr12 10416647 10416672 -110840858 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 664 1203 34 0 14 chr12 10416672 10416808 -110840722 - B1_Mm SINE Alu -10 137 2 5 664 1449 63 16 0 chr12 10416812 10417002 -110840528 - B2_Mm1t SINE B2 0 193 1 5 664 564 336 61 59 chr12 10417030 10417425 -110840105 + L1MEd LINE L1 2444 2839 -3307 5 664 2280 174 78 77 chr12 10417425 10417998 -110839532 - RMER15 LTR ERVL -1 574 1 5 664 564 336 61 59 chr12 10417998 10418108 -110839422 + L1MEd LINE L1 2840 2950 -3196 5 664 220 70 23 23 chr12 10418174 10418218 -110839312 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 664 728 398 61 26 chr12 10418407 10418898 -110838632 - MER21B LTR ERV1 -217 646 139 5 664 1963 224 57 40 chr12 10418902 10419615 -110837915 - RMER17A2 LTR ERVK -16 735 5 5 664 274 45 0 95 chr12 10420185 10420259 -110837271 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 5 664 5815 67 5 7 chr12 10420282 10421043 -110836487 - L1_Mus2 LINE L1 0 6566 5807 5 664 1508 111 34 0 chr12 10421043 10421278 -110836252 + L1_Mus2 LINE L1 5545 5787 -96 5 664 346 246 31 3 chr12 10421283 10421400 -110836130 + MER45R DNA Tip100 68 193 -1388 5 664 874 206 174 8 chr12 10421659 10421960 -110835570 + L1_Mus2 LINE L1 483 959 -5660 5 664 3622 52 4 8 chr12 10421958 10422436 -110835094 - L1Md_F2 LINE L1 -184 5699 5224 5 664 6569 67 2 13 chr12 10422436 10423309 -110834221 + L1Md_F2 LINE L1 5709 6572 -10 5 664 741 79 0 0 chr12 10423339 10423440 -110834090 + (GGGAA)n Simple_repeat Simple_repeat 4 104 0 5 664 5371 115 3 13 chr12 10423482 10424654 -110832876 + L1_Mus2 LINE L1 955 2116 -3770 5 664 5590 79 4 16 chr12 10424651 10425783 -110831747 + L1_Mus2 LINE L1 5242 6361 -208 5 664 398 111 27 14 chr12 10425753 10425826 -110831704 - MusHAL1 LINE L1 -1656 1056 983 5 664 944 217 32 28 chr12 10425832 10426050 -110831480 - URR1B DNA MER1_type -6 219 1 5 664 297 239 0 29 chr12 10426686 10426755 -110830775 + CT-rich Low_complexity Low_complexity 2 68 0 5 664 201 216 71 10 chr12 10427288 10427386 -110830144 + (TTATA)n Simple_repeat Simple_repeat 4 107 0 5 664 500 259 44 9 chr12 10427424 10427537 -110829993 - RSINE1 SINE B4 -38 127 11 5 664 355 348 44 6 chr12 10427587 10427746 -110829784 + L1MD1 LINE L1 6021 6185 -57 5 664 356 60 0 0 chr12 10427841 10427891 -110829639 - L1_Mus1 LINE L1 -17 6550 6501 5 664 234 135 0 0 chr12 10427915 10427952 -110829578 - B1_Mur1 SINE Alu -15 134 98 5 664 1566 224 65 13 chr12 10427964 10428429 -110829101 + Lx9 LINE L1 7146 7634 -10 6 664 1006 293 64 78 chr12 10429694 10430145 -110827385 - MT2A LTR ERVL -10 523 79 6 664 1917 231 107 1 chr12 10430178 10430796 -110826734 + Lx5 LINE L1 6370 7051 -7 6 664 258 200 0 0 chr12 10430844 10430894 -110826636 - MT2A LTR ERVL -483 50 1 6 664 439 309 44 27 chr12 10431177 10431360 -110826170 + MLT1B LTR MaLR 196 381 -9 6 664 191 211 0 0 chr12 10432101 10432139 -110825391 - L2b LINE L2 0 3375 3338 6 664 1075 304 94 17 chr12 10432278 10432630 -110824900 - MTE2b LTR MaLR 0 379 1 6 664 235 342 179 10 chr12 10433060 10433261 -110824269 + MIRc SINE MIR 34 268 0 6 664 363 96 0 0 chr12 10433794 10433846 -110823684 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 664 234 0 0 0 chr12 10433950 10433976 -110823554 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 664 213 333 0 0 chr12 10434116 10434170 -110823360 - B4A SINE B4 -235 57 4 6 664 460 259 0 9 chr12 10434176 10434285 -110823245 - PB1D10 SINE Alu -9 108 1 6 664 365 294 25 29 chr12 10434358 10434499 -110823031 - MIRb SINE MIR -38 230 84 6 664 185 312 12 38 chr12 10434514 10434594 -110822936 - MIRc SINE MIR -121 147 70 6 664 204 224 14 29 chr12 10434953 10435022 -110822508 + T-rich Low_complexity Low_complexity 4 71 0 6 664 6985 146 3 48 chr12 10435074 10436969 -110820561 - L1_Mus3 LINE L1 0 6638 4850 6 664 343 386 37 53 chr12 10437099 10437460 -110820070 + ORR1E LTR MaLR 22 370 0 6 664 799 279 64 21 chr12 10437812 10438138 -110819392 + L1ME3B LINE L1 5535 5874 -366 6 664 260 263 67 50 chr12 10438138 10438258 -110819272 + L1MEg1 LINE L1 4 125 -6110 6 664 683 320 48 32 chr12 10438894 10439009 -110818521 + B4 SINE B4 102 216 -76 6 664 227 0 0 83 chr12 10439009 10439045 -110818485 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 664 683 320 48 32 chr12 10439045 10439116 -110818414 + B4 SINE B4 217 290 -2 6 664 332 217 7 0 chr12 10439118 10439256 -110818274 + (CA)n Simple_repeat Simple_repeat 2 140 0 6 664 317 376 82 11 chr12 10439306 10439444 -110818086 + B3 SINE B2 17 167 -49 6 664 320 43 0 21 chr12 10439444 10439491 -110818039 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 664 317 376 82 11 chr12 10439491 10439535 -110817995 + B3 SINE B2 168 212 -4 6 664 1417 17 0 38 chr12 10440104 10440289 -110817241 - L1Md_A LINE L1 0 6582 6405 6 664 204 158 0 0 chr12 10440806 10440844 -110816686 + CT-rich Low_complexity Low_complexity 2 39 0 6 664 275 330 0 110 chr12 10441068 10441177 -110816353 - B1F1 SINE Alu -48 101 5 6 664 2302 150 71 2 chr12 10442191 10442599 -110814931 + RLTR16 LTR ERVK 1 436 -69 6 664 1025 191 22 18 chr12 10443127 10443351 -110814179 - URR1B DNA MER1_type 0 225 1 6 664 609 285 110 30 chr12 10443587 10443851 -110813679 - B4 SINE B4 -7 285 1 6 664 216 302 29 68 chr12 10446622 10446725 -110810805 - MIR3 SINE MIR -27 181 83 6 664 203 88 0 29 chr12 10448266 10448301 -110809229 + (GGA)n Simple_repeat Simple_repeat 3 36 0 6 664 375 253 79 84 chr12 10451716 10451906 -110805624 + L1MA7 LINE L1 6103 6291 0 6 664 291 265 35 46 chr12 10452784 10452871 -110804659 + RSINE1 SINE B4 10 95 -70 6 664 218 284 0 39 chr12 10452874 10452951 -110804579 + GA-rich Low_complexity Low_complexity 4 77 0 6 664 237 65 0 0 chr12 10452953 10452984 -110804546 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 664 916 261 49 34 chr12 10453040 10453306 -110804224 + B4A SINE B4 23 292 0 6 664 554 325 97 13 chr12 10453410 10453719 -110803811 + L1ME3B LINE L1 5529 5863 -377 6 664 450 0 0 0 chr12 10453749 10453799 -110803731 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 664 741 293 82 45 chr12 10453925 10454193 -110803337 - B4A SINE B4 -2 290 13 6 664 50 31 0 0 chr12 10454208 10454272 -110803258 + AT_rich Low_complexity Low_complexity 1 64 0 6 664 495 0 0 0 chr12 10454410 10454465 -110803065 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 664 2255 109 6 3 chr12 10454465 10454786 -110802744 - ORR1A2 LTR MaLR -5 322 1 6 664 806 109 8 0 chr12 10455286 10455414 -110802116 + (TC)n Simple_repeat Simple_repeat 2 130 0 6 664 1449 237 78 95 chr12 10455957 10456348 -110801182 + RLTR24 LTR ERV1 3 397 -132 6 664 723 124 0 0 chr12 10456348 10456461 -110801069 + (CACG)n Simple_repeat Simple_repeat 4 116 0 6 664 1158 122 0 0 chr12 10456461 10456641 -110800889 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 664 1449 237 78 95 chr12 10456641 10456784 -110800746 + RLTR24 LTR ERV1 398 528 -1 6 664 31 26 0 0 chr12 10457521 10457559 -110799971 + AT_rich Low_complexity Low_complexity 1 38 0 6 664 363 321 28 72 chr12 10457630 10457811 -110799719 + B4 SINE B4 2 174 -118 6 664 486 0 0 0 chr12 10457894 10457948 -110799582 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 664 411 21 0 0 chr12 10457948 10457995 -110799535 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 664 381 277 90 0 chr12 10458637 10458792 -110798738 + ORSL-2a DNA Tip100 60 228 -114 6 664 228 308 119 91 chr12 10459459 10459602 -110797928 + LTR77 LTR ERV1 441 587 -35 6 664 3260 69 0 17 chr12 10459704 10460119 -110797411 + L1Md_F2 LINE L1 6172 6579 -3 6 664 592 142 10 31 chr12 10460236 10460390 -110797140 + RMER10A LTR ERVL 16 115 -283 6 664 1181 96 6 0 chr12 10460390 10460568 -110796962 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 6 664 448 188 8 86 chr12 10460568 10460591 -110796939 + RMER10A LTR ERVL 417 438 -4 6 664 520 133 0 72 chr12 10461296 10461434 -110796096 + G-rich Low_complexity Low_complexity 5 132 0 6 664 582 304 25 40 chr12 10462054 10462253 -110795277 + B3A SINE B2 3 198 0 6 664 342 286 24 12 chr12 10462388 10462473 -110795057 - ORR1E LTR MaLR -273 86 1 6 664 229 230 93 13 chr12 10462741 10462816 -110794714 - L1MD LINE L1 -2432 3714 3634 6 664 278 115 19 0 chr12 10462831 10462883 -110794647 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 664 914 191 59 68 chr12 10463267 10463486 -110794044 + MER20 DNA MER1_type 1 217 -2 6 664 314 45 23 0 chr12 10464102 10464146 -110793384 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 6 664 427 328 102 6 chr12 10464227 10464472 -110793058 - B4A SINE B4 -17 275 4 6 664 384 22 0 0 chr12 10464579 10464624 -110792906 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 664 633 340 61 43 chr12 10466063 10466392 -110791138 + ORR1E LTR MaLR 1 335 -24 6 664 226 247 35 105 chr12 10466510 10466596 -110790934 - MLT1J1 LTR MaLR -67 377 298 6 664 2648 199 39 35 chr12 10466681 10467253 -110790277 - Lx5 LINE L1 0 7050 6477 6 664 2447 204 46 34 chr12 10467315 10467839 -110789691 + Lx2B LINE L1 6470 6999 -1 6 664 330 279 9 19 chr12 10467903 10468009 -110789521 - MLT1J1 LTR MaLR -312 132 28 6 664 266 250 67 11 chr12 10471307 10471396 -110786134 + L1MA8 LINE L1 6060 6153 -138 6 664 265 244 23 47 chr12 10471740 10471826 -110785704 + MLT1A1 LTR MaLR 322 405 -3 6 664 286 231 76 17 chr12 10471830 10471949 -110785581 + L1MA8 LINE L1 6165 6290 -1 6 664 848 87 8 0 chr12 10471958 10472085 -110785445 + (GGAA)n Simple_repeat Simple_repeat 3 130 0 6 664 213 336 65 52 chr12 10473342 10473496 -110784034 - MIRc SINE MIR -3 265 110 6 664 228 288 37 67 chr12 10473868 10474002 -110783528 - MIRb SINE MIR -119 149 20 6 664 641 185 0 6 chr12 10475611 10475785 -110781745 + GA-rich Low_complexity Low_complexity 1 173 0 6 664 1488 312 32 19 chr12 10475797 10476362 -110781168 - L1MA4 LINE L1 -362 5938 5367 6 664 228 253 22 54 chr12 10479432 10479524 -110778006 - MTEa LTR MaLR -10 369 281 6 664 195 69 0 0 chr12 10481765 10481794 -110775736 + (T)n Simple_repeat Simple_repeat 1 29 0 6 664 735 271 80 94 chr12 10481812 10481944 -110775586 - L1_Mur3 LINE L1 -592 5288 5189 6 664 1073 110 7 0 chr12 10481944 10482090 -110775440 - B1_Mm SINE Alu 0 147 1 6 664 735 271 80 94 chr12 10482090 10482372 -110775158 - L1_Mur3 LINE L1 -692 5188 4880 6 664 3506 294 75 28 chr12 10482397 10484190 -110773340 + Lx8 LINE L1 5355 7226 -247 6 664 328 71 36 0 chr12 10484190 10484246 -110773284 + (GGGAGA)n Simple_repeat Simple_repeat 3 60 0 6 664 288 304 206 10 chr12 10484246 10484455 -110773075 + Lx8 LINE L1 7214 7463 -10 6 664 243 337 29 39 chr12 10485083 10485185 -110772345 - MIR SINE MIR -72 136 36 6 665 200 35 35 0 chr12 10487341 10487370 -110770160 + (TTC)n Simple_repeat Simple_repeat 1 30 0 6 665 864 91 0 0 chr12 10488232 10488364 -110769166 + (GA)n Simple_repeat Simple_repeat 2 133 0 6 665 180 205 43 64 chr12 10488440 10488487 -110769043 - L2 LINE L2 -3022 397 352 6 665 279 0 0 0 chr12 10490326 10490357 -110767173 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 665 382 265 72 0 chr12 10490383 10490466 -110767064 - RSINE1 SINE B4 -74 91 3 6 665 219 36 0 0 chr12 10490972 10491000 -110766530 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 665 279 54 0 0 chr12 10491307 10491344 -110766186 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 665 226 221 28 42 chr12 10491667 10491738 -110765792 - MLT1G LTR MaLR -194 397 328 6 665 3285 32 48 0 chr12 10491984 10492362 -110765168 - MTA_Mm LTR MaLR 0 396 1 6 665 9529 48 2 1 chr12 10492362 10493459 -110764071 - MTA_Mm-int LTR MaLR 0 1098 1 6 665 3420 24 48 0 chr12 10493459 10493837 -110763693 - MTA_Mm LTR MaLR 0 396 1 6 665 189 254 0 0 chr12 10493838 10493883 -110763647 - MIR SINE MIR -120 156 108 6 665 374 264 73 81 chr12 10493965 10494101 -110763429 - ID_B1 SINE B4 0 224 90 6 665 383 314 25 17 chr12 10494100 10494220 -110763310 - B4A SINE B4 -140 152 32 6 665 3207 119 18 2 chr12 10495092 10495546 -110761984 + Lx2 LINE L1 6533 6993 -4 6 665 746 278 49 0 chr12 10495664 10495869 -110761661 - B3 SINE B2 0 216 2 6 665 254 77 26 0 chr12 10496962 10497001 -110760529 + U2 snRNA snRNA 1 40 -148 6 665 1391 141 94 35 chr12 10499483 10499672 -110757858 - RMER17C LTR ERVK 0 410 208 6 665 387 0 0 0 chr12 10499672 10499715 -110757815 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 665 1391 141 94 35 chr12 10499715 10499832 -110757698 - RMER17C LTR ERVK -203 207 100 6 665 873 69 0 0 chr12 10499832 10499962 -110757568 + (GA)n Simple_repeat Simple_repeat 1 130 0 6 665 1391 141 94 35 chr12 10499962 10499993 -110757537 - RMER17C LTR ERVK -311 99 53 6 665 264 154 0 0 chr12 10500000 10500039 -110757491 - RMER17C LTR ERVK -371 39 1 1 665 25966 68 1 7 chr12 10501105 10505416 -110752114 - L1Md_F2 LINE L1 -4 6578 2295 2 665 2008 142 3 6 chr12 10505416 10505728 -110751802 + RLTR10E LTR ERVK 1 311 0 3 665 1295 70 0 6 chr12 10505728 10505901 -110751629 + MMERVK10C-int LTR ERVK 1 172 -7409 3 665 281 245 0 0 chr12 10505901 10505954 -110751576 + RLTR27 LTR ERVK 223 275 -34 4 665 329 70 0 0 chr12 10505954 10505997 -110751533 + MMERVK10C-int LTR ERVK 225 267 -7314 3 665 288 204 40 10 chr12 10506086 10506185 -110751345 + A-rich Low_complexity Low_complexity 3 104 0 5 665 319 89 0 0 chr12 10506185 10506230 -110751300 + RLTR10-int LTR ERVK 93 137 -6405 6 665 2585 62 6 3 chr12 10506233 10506573 -110750957 + RLTR10-int LTR ERVK 652 992 -995 6 665 372 298 36 31 chr12 10506774 10506996 -110750534 + RLTR10-int LTR ERVK 894 1061 -5481 6 665 276 182 36 0 chr12 10507015 10507070 -110750460 + IAP-d-int LTR ERVK 447 503 -6039 7 665 1440 101 97 0 chr12 10507070 10507297 -110750233 + IAP-d-int LTR ERVK 5007 5255 -1287 7 665 4030 115 12 3 chr12 10507297 10507980 -110749550 + IAPEY3-int LTR ERVK 6965 7679 -1 8 665 7373 73 20 13 chr12 10507980 10509845 -110747685 - L1Md_F LINE L1 -3582 2301 422 9 665 297 236 77 8 chr12 10509845 10509978 -110747552 + L1M3 LINE L1 3057 3199 -2947 1 665 348 348 22 0 chr12 10509997 10510132 -110747398 + B4 SINE B4 10 147 -145 1 665 1876 39 0 4 chr12 10511477 10511712 -110745818 + L1Md_F2 LINE L1 5353 5586 -297 1 665 7526 63 18 13 chr12 10511712 10512694 -110744836 + L1Md_F2 LINE L1 5587 6573 -9 1 665 369 0 0 0 chr12 10512710 10512751 -110744779 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 665 593 190 32 110 chr12 10512754 10512908 -110744622 - B3A SINE B2 -56 142 1 1 665 549 0 0 0 chr12 10513401 10513462 -110744068 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 665 675 271 215 28 chr12 10514139 10514704 -110742826 - L1M2 LINE L1 -1098 5045 4363 1 665 495 0 0 0 chr12 10514704 10514759 -110742771 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 665 675 271 215 28 chr12 10514759 10514839 -110742691 - L1M2 LINE L1 -1781 4362 4279 1 665 1950 321 69 18 chr12 10514837 10515177 -110742353 + Lx8 LINE L1 6332 6705 -768 1 665 189 0 0 0 chr12 10515177 10515198 -110742332 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 665 1950 321 69 18 chr12 10515198 10515659 -110741871 + Lx8 LINE L1 6706 7174 -299 1 665 237 65 0 0 chr12 10516718 10516749 -110740781 + (CAG)n Simple_repeat Simple_repeat 2 32 0 2 665 228 224 0 0 chr12 10516749 10516798 -110740732 + (CCA)n Simple_repeat Simple_repeat 3 51 0 2 665 239 270 129 10 chr12 10516798 10516899 -110740631 + MER5A1 DNA MER1_type 22 134 -32 2 665 2005 135 18 15 chr12 10516899 10517229 -110740301 + Lx4A LINE L1 6719 7049 -9 2 665 5972 120 30 25 chr12 10517234 10518682 -110738848 + Lx LINE L1 5176 6629 -25 2 665 26 50 0 0 chr12 10518682 10518722 -110738808 + AT_rich Low_complexity Low_complexity 1 40 0 2 665 229 378 44 0 chr12 10519335 10519425 -110738105 + MLT1J-int LTR MaLR 246 339 -1048 2 665 329 294 16 0 chr12 10519459 10519572 -110737958 + MLT1J-int LTR MaLR 900 1017 -392 2 665 2126 147 50 23 chr12 10522808 10523192 -110734338 - ORR1B1 LTR MaLR 0 394 1 2 665 1167 194 9 14 chr12 10523262 10523481 -110734049 + URR1B DNA MER1_type 8 225 0 2 665 477 289 29 82 chr12 10523481 10523510 -110734020 - CYRA11_Mm Unknown Y-chromosome -457 160 145 2 665 26 50 0 0 chr12 10523647 10523687 -110733843 + AT_rich Low_complexity Low_complexity 1 40 0 3 665 2276 153 36 13 chr12 10524541 10524926 -110732604 + ORR1B1 LTR MaLR 1 394 0 3 665 711 320 0 20 chr12 10525053 10525141 -110732389 + B4 SINE B4 5 88 -204 3 665 257 365 46 31 chr12 10525141 10525271 -110732259 + B1_Mur3 SINE Alu 4 135 -14 3 665 205 340 18 45 chr12 10525782 10525893 -110731637 - L3 LINE CR1 -2393 2096 1989 3 665 918 284 58 11 chr12 10526633 10526911 -110730619 - B4A SINE B4 0 292 2 3 665 333 267 32 34 chr12 10527442 10527579 -110729951 + L1MB1 LINE L1 6005 6140 -49 3 665 314 334 30 97 chr12 10527807 10527985 -110729545 + Charlie24 DNA MER1_type 1800 1975 -475 3 665 1101 42 21 0 chr12 10527985 10528129 -110729401 - B1_Mm SINE Alu 0 147 1 3 665 314 334 30 97 chr12 10528129 10528321 -110729209 + Charlie24 DNA MER1_type 1976 2144 -306 3 665 417 110 24 12 chr12 10528328 10528411 -110729119 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 665 822 258 30 5 chr12 10529166 10529365 -110728165 + B3 SINE B2 6 209 -7 4 665 4425 89 82 2 chr12 10529388 10530021 -110727509 - L1_Mus1 LINE L1 -2 6565 5882 4 665 2571 76 3 3 chr12 10530022 10530379 -110727151 - L1_Mus3 LINE L1 -236 5647 5291 4 665 1491 56 0 0 chr12 10530367 10530564 -110726966 + L1_Mus3 LINE L1 5672 5868 -770 4 665 397 325 9 17 chr12 10532192 10532308 -110725222 + PB1D10 SINE Alu 1 115 -2 4 665 561 348 63 48 chr12 10532972 10533241 -110724289 - B4A SINE B4 -5 287 15 4 665 3776 58 12 26 chr12 10533242 10533742 -110723788 + MT2_Mm LTR ERVL 1 493 0 4 665 453 301 140 23 chr12 10534040 10534305 -110723225 + MER74B LTR ERVL 323 618 -4 4 665 378 0 0 0 chr12 10536490 10536532 -110720998 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 665 3732 137 7 0 chr12 10536584 10537197 -110720333 - Lx2 LINE L1 -268 6729 6113 4 665 1607 151 14 3 chr12 10537197 10537483 -110720047 + Lx2 LINE L1 6708 6996 -1 4 665 743 278 19 57 chr12 10539017 10539287 -110718243 + MTEb LTR MaLR 12 277 -102 4 665 482 240 81 5 chr12 10539439 10539636 -110717894 + L1MA4 LINE L1 5156 5367 -776 5 665 814 289 175 40 chr12 10539816 10540295 -110717235 - Lx8 LINE L1 -102 7371 6828 5 665 584 295 53 40 chr12 10540427 10540805 -110716725 + L1MA4 LINE L1 5550 5932 -368 5 665 3084 199 25 5 chr12 10540835 10541442 -110716088 + Lx5 LINE L1 6416 7034 -16 5 665 183 80 0 0 chr12 10541442 10541467 -110716063 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 5 665 261 0 0 0 chr12 10541587 10541616 -110715914 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 665 256 273 0 0 chr12 10541754 10541820 -110715710 + RSINE1 SINE B4 11 76 -89 5 665 304 369 62 73 chr12 10544530 10544805 -110712725 + B4A SINE B4 9 280 -12 5 665 233 231 30 15 chr12 10544827 10544893 -110712637 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 665 27 49 0 0 chr12 10545518 10545559 -110711971 + AT_rich Low_complexity Low_complexity 1 41 0 5 665 831 226 59 41 chr12 10547706 10547927 -110709603 + URR1A DNA MER1_type 1 225 -1 5 665 651 72 0 0 chr12 10548071 10548154 -110709376 - L1_Mus1 LINE L1 -356 6211 6129 6 665 2579 61 12 6 chr12 10548155 10548501 -110709029 + L1_Mus1 LINE L1 6220 6567 0 6 665 2442 201 73 19 chr12 10549031 10549568 -110707962 + RMER15 LTR ERVL 1 566 -9 6 665 374 362 85 24 chr12 10550547 10550793 -110706737 + MLT1C LTR MaLR 200 460 -7 6 665 3367 33 8 0 chr12 10551733 10552126 -110705404 - MTA_Mm LTR MaLR 0 396 1 6 665 7755 60 6 60 chr12 10552126 10552902 -110704628 - MTA_Mm-int LTR MaLR 0 1098 383 6 665 674 33 0 0 chr12 10552902 10552993 -110704537 - L1Md_T LINE L1 -1 6581 6491 6 665 7755 60 6 60 chr12 10552993 10553358 -110704172 - MTA_Mm-int LTR MaLR -716 382 18 6 665 273 116 0 23 chr12 10553355 10553399 -110704131 - tRNA-Leu-TTA tRNA tRNA -5 81 39 6 665 3183 212 31 6 chr12 10553514 10554229 -110703301 - Lx5 LINE L1 -5 7053 6275 6 665 497 241 53 66 chr12 10554259 10554410 -110703120 + RLTR28B LTR ERVL 1 149 -332 6 665 1133 78 0 0 chr12 10554410 10554563 -110702967 - L1Md_F2 LINE L1 -305 6277 6125 6 665 360 71 0 0 chr12 10554563 10554619 -110702911 + L1Md_F2 LINE L1 6515 6570 -12 6 665 999 201 11 28 chr12 10554619 10554965 -110702565 + RLTR28 LTR ERVL 86 524 0 7 665 537 318 62 53 chr12 10555173 10555499 -110702031 + MLT1E1A LTR MaLR 290 611 -13 7 665 274 250 14 14 chr12 10557404 10557477 -110700053 + Charlie12 DNA MER1_type 102 174 -2699 7 665 348 298 12 0 chr12 10557426 10557510 -110700020 - RMER30 DNA MER1_type -115 87 3 7 665 279 79 0 0 chr12 10557844 10557882 -110699648 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 7 665 212 152 0 0 chr12 10557882 10557915 -110699615 + CT-rich Low_complexity Low_complexity 3 35 0 7 665 1113 83 95 6 chr12 10557915 10558084 -110699446 - B2_Mm2 SINE B2 -9 186 3 7 665 316 304 42 0 chr12 10558317 10558441 -110699089 - MIR SINE MIR -71 191 66 7 665 216 330 25 34 chr12 10558447 10558566 -110698964 + L2 LINE L2 2559 2676 -743 7 665 248 356 16 25 chr12 10558850 10558971 -110698559 + MLT1H2 LTR MaLR 64 183 -306 7 665 279 0 0 0 chr12 10559373 10559404 -110698126 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 665 248 297 40 0 chr12 10559924 10559998 -110697532 + MLT1J1 LTR MaLR 3 79 -365 8 665 189 74 0 0 chr12 10560078 10560105 -110697425 + (GTGTG)n Simple_repeat Simple_repeat 1 27 0 8 665 337 250 0 0 chr12 10560505 10560573 -110696957 + ID4_ SINE ID 5 72 -11 8 665 354 123 0 0 chr12 10560573 10560630 -110696900 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 665 3375 210 88 73 chr12 10561356 10561919 -110695611 + RLTR13D1 LTR ERVK 1 535 -488 8 665 7188 54 13 1 chr12 10561919 10562817 -110694713 + L1Md_F2 LINE L1 5662 6570 -12 8 665 3375 91 55 11 chr12 10562817 10563266 -110694264 + RLTR13D1 LTR ERVK 346 805 -1 8 665 195 42 0 0 chr12 10563885 10563909 -110693621 + (T)n Simple_repeat Simple_repeat 1 24 0 8 665 2093 26 30 0 chr12 10564697 10564967 -110692563 + L1Md_F2 LINE L1 5309 5586 -297 8 665 7844 45 21 2 chr12 10564967 10565944 -110691586 + L1Md_F2 LINE L1 5587 6582 0 8 665 393 136 0 0 chr12 10565951 10566017 -110691513 + (TAA)n Simple_repeat Simple_repeat 2 67 0 8 665 26 30 0 0 chr12 10566180 10566213 -110691317 + AT_rich Low_complexity Low_complexity 1 33 0 9 665 7388 84 10 7 chr12 10566373 10567781 -110689749 + L1_Mus3 LINE L1 5228 6638 0 9 665 198 71 0 0 chr12 10568035 10568063 -110689467 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 665 300 348 138 42 chr12 10568120 10568360 -110689170 + B4 SINE B4 12 274 -18 9 665 372 88 0 0 chr12 10568400 10568457 -110689073 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 665 291 28 0 0 chr12 10570294 10570330 -110687200 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 665 686 304 69 8 chr12 10570639 10571000 -110686530 + L1MA4 LINE L1 5521 5903 -397 9 665 200 216 0 0 chr12 10571276 10571313 -110686217 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 9 665 21 0 0 0 chr12 10572961 10572982 -110684548 + AT_rich Low_complexity Low_complexity 1 21 0 9 665 264 357 44 18 chr12 10572996 10573110 -110684420 + MIR SINE MIR 86 202 -60 9 665 538 274 233 60 chr12 10573235 10573484 -110684046 + B4A SINE B4 1 292 0 1 665 257 167 13 0 chr12 10573485 10573563 -110683967 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 665 235 209 54 21 chr12 10573567 10573660 -110683870 - Lx9 LINE L1 -152 7492 7397 1 665 240 320 62 0 chr12 10574231 10574328 -110683202 + MIRb SINE MIR 63 165 -103 1 665 866 304 127 24 chr12 10574477 10574855 -110682675 + MLT1J2 LTR MaLR 8 424 -24 1 665 906 261 43 0 chr12 10574861 10575049 -110682481 - MER63A DNA AcHobo 0 210 15 1 665 183 341 92 21 chr12 10576218 10576359 -110681171 - MIR SINE MIR -59 203 53 1 665 264 339 14 0 chr12 10576652 10576734 -110680796 - ID4_ SINE ID -60 92 10 1 665 24 0 0 0 chr12 10577440 10577464 -110680066 + AT_rich Low_complexity Low_complexity 1 24 0 1 665 762 286 35 54 chr12 10577783 10578153 -110679377 + Lx6 LINE L1 7072 7434 -26 1 665 195 204 0 0 chr12 10580831 10580875 -110676655 + GA-rich Low_complexity Low_complexity 2 45 0 1 665 241 384 34 14 chr12 10582052 10582200 -110675330 + L2 LINE L2 1903 2053 -1366 1 665 213 65 0 0 chr12 10582236 10582267 -110675263 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1 665 1148 294 58 50 chr12 10582592 10582968 -110674562 - MTEa LTR MaLR 0 379 1 1 665 243 308 39 52 chr12 10583573 10583667 -110673863 - MIR3 SINE MIR -85 183 86 1 665 366 365 29 6 chr12 10584238 10584409 -110673121 - L2 LINE L2 -575 2844 2670 1 665 594 214 10 0 chr12 10584917 10585214 -110672316 + CT-rich Low_complexity Low_complexity 1 300 0 1 665 290 260 39 29 chr12 10585579 10585682 -110671848 - MER3 DNA MER1_type -14 195 92 1 665 369 149 0 0 chr12 10585691 10585758 -110671772 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 665 363 326 53 102 chr12 10586146 10586488 -110671042 - L2a LINE L2 -1 3425 3101 1 665 836 165 172 21 chr12 10588181 10588373 -110669157 + URR1B DNA MER1_type 5 225 0 1 665 317 340 79 33 chr12 10588380 10588532 -110668998 - MER5A DNA MER1_type -29 160 2 1 665 2794 229 116 45 chr12 10588631 10589434 -110668096 - RMER13A LTR ERVK 0 860 1 1 665 205 266 82 71 chr12 10589671 10589756 -110667774 + L2a LINE L2 3338 3423 -3 1 665 1039 269 121 14 chr12 10589966 10590331 -110667199 - MTD LTR MaLR -14 405 2 1 665 22 0 0 0 chr12 10590736 10590758 -110666772 + AT_rich Low_complexity Low_complexity 1 22 0 1 665 186 254 27 82 chr12 10591171 10591244 -110666286 + L3 LINE CR1 4176 4244 -245 1 665 596 298 51 57 chr12 10591673 10592113 -110665417 + RLTR12B LTR ERVK 41 514 -14 1 665 394 310 39 0 chr12 10592364 10592493 -110665037 + RSINE1 SINE B4 2 135 -30 1 665 943 248 20 0 chr12 10592767 10592965 -110664565 + B3 SINE B2 15 216 0 1 665 403 115 46 0 chr12 10592986 10593073 -110664457 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1 665 996 265 160 36 chr12 10594767 10595241 -110662289 - MT2A LTR ERVL 0 533 1 1 665 658 140 18 0 chr12 10597110 10597224 -110660306 - B1_Mur4 SINE Alu -6 144 29 1 665 687 293 56 41 chr12 10597276 10597618 -110659912 + Lx8 LINE L1 7115 7461 -12 1 665 510 270 99 22 chr12 10599744 10599926 -110657604 - MLT1B LTR MaLR -2 388 193 1 665 182 205 0 64 chr12 10600142 10600189 -110657341 - MIR SINE MIR -47 215 172 1 665 300 27 0 0 chr12 10600790 10600827 -110656703 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 665 279 0 0 0 chr12 10600827 10600857 -110656673 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 665 2342 184 22 22 chr12 10601321 10601810 -110655720 + RMER1B Other Other 553 1041 -25 1 665 257 143 29 0 chr12 10601812 10601882 -110655648 + T-rich Low_complexity Low_complexity 3 74 0 1 665 902 67 8 0 chr12 10601883 10602002 -110655528 - B1_Mus1 SINE Alu -1 147 28 1 665 500 236 9 9 chr12 10602037 10602148 -110655382 + B3A SINE B2 1 111 -87 1 665 330 67 0 0 chr12 10602172 10602217 -110655313 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 665 259 193 18 0 chr12 10602387 10602444 -110655086 + L1M5 LINE L1 5541 5598 -526 1 665 27 0 0 0 chr12 10602601 10602628 -110654902 + AT_rich Low_complexity Low_complexity 1 27 0 1 665 225 245 19 0 chr12 10602800 10602853 -110654677 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 665 582 136 0 0 chr12 10602854 10602942 -110654588 - B1_Mus2 SINE Alu -2 145 58 1 665 322 288 41 41 chr12 10602963 10603133 -110654397 - L1MD LINE L1 -2949 3197 3028 1 665 1146 255 85 57 chr12 10603429 10603795 -110653735 + MTEb LTR MaLR 1 376 -3 1 665 519 17 0 0 chr12 10604656 10604716 -110652814 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 1 665 561 15 0 0 chr12 10604716 10604781 -110652749 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 1 665 2024 103 68 6 chr12 10604783 10605106 -110652424 - Lx2 LINE L1 -9 6988 6646 1 665 195 42 0 0 chr12 10606761 10606785 -110650745 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 665 236 336 41 7 chr12 10607270 10607417 -110650113 - L1MA10 LINE L1 -3 6331 6180 1 665 360 94 0 0 chr12 10608559 10608612 -110648918 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1 665 2846 116 55 4 chr12 10609994 10610446 -110647084 - MT2C_Mm LTR ERVL 0 475 1 1 665 2953 77 9 19 chr12 10610508 10610933 -110646597 - BGLII LTR ERVK 0 421 1 1 665 779 328 66 25 chr12 10611602 10611921 -110645609 - MTE2b LTR MaLR 0 379 48 1 665 195 42 0 0 chr12 10611936 10611960 -110645570 + (T)n Simple_repeat Simple_repeat 1 24 0 1 665 7959 25 1 0 chr12 10611963 10613249 -110644281 - L1Md_A LINE L1 -1 6581 5295 1 665 192 386 42 21 chr12 10613997 10614140 -110643390 + MIR SINE MIR 93 238 -24 1 665 863 290 48 66 chr12 10614152 10614529 -110643001 - ORR1D2 LTR MaLR 0 370 1 1 665 2654 119 41 45 chr12 10614680 10615164 -110642366 + RLTR45 LTR ERVK 1 482 0 1 665 209 330 29 29 chr12 10615749 10615852 -110641678 - MIR SINE MIR -126 136 34 1 665 609 14 0 0 chr12 10615948 10616018 -110641512 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 665 486 0 0 0 chr12 10616730 10616784 -110640746 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 666 2161 178 0 0 chr12 10616945 10617339 -110640191 - L1_Mur2 LINE L1 -616 5261 4868 1 666 6648 108 31 6 chr12 10617337 10618417 -110639113 + Lx LINE L1 5271 6378 -276 1 666 2061 121 70 83 chr12 10618417 10618815 -110638715 + RLTR9C LTR ERVK 1 393 0 1 666 6648 98 35 8 chr12 10618815 10619082 -110638448 + Lx LINE L1 6379 6647 -7 1 666 819 206 0 0 chr12 10619335 10619510 -110638020 + GA-rich Low_complexity Low_complexity 6 180 0 1 666 205 282 67 76 chr12 10620604 10620723 -110636807 + MIR SINE MIR 66 183 -79 1 666 250 331 35 75 chr12 10621260 10621433 -110636097 - RLTR25A LTR ERVK 0 1028 863 1 666 338 367 67 44 chr12 10622341 10622566 -110634964 - RLTR25A LTR ERVK -872 231 2 1 666 557 64 0 13 chr12 10622566 10622645 -110634885 + (TCC)n Simple_repeat Simple_repeat 2 79 0 1 666 237 277 0 0 chr12 10623345 10623392 -110634138 + polypurine Low_complexity Low_complexity 2 48 0 1 666 1134 258 70 41 chr12 10623597 10623770 -110633760 - ORR1D2 LTR MaLR -16 354 167 1 666 642 68 0 0 chr12 10623770 10623858 -110633672 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 666 1134 258 70 41 chr12 10623858 10624028 -110633502 - ORR1D2 LTR MaLR -204 166 2 1 666 414 329 35 0 chr12 10625264 10625407 -110632123 + MLT1N2 LTR MaLR 413 560 -2 1 666 987 238 11 0 chr12 10626360 10626545 -110630985 + B3 SINE B2 2 188 -28 1 666 1155 247 111 23 chr12 10626549 10626910 -110630620 + L1_Rod LINE L1 4499 4871 -976 1 666 396 40 0 0 chr12 10626910 10626960 -110630570 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 1 666 1155 247 111 23 chr12 10626960 10627112 -110630418 + L1_Rod LINE L1 4872 5056 -791 1 666 281 256 36 12 chr12 10627129 10627212 -110630318 + L1_Rod LINE L1 5040 5124 -723 1 666 264 348 58 7 chr12 10627768 10627907 -110629623 + MIRb SINE MIR 55 200 -68 1 666 5027 161 92 25 chr12 10629118 10630278 -110627252 - Lx2B LINE L1 -3 6651 5601 1 666 661 250 8 0 chr12 10630301 10630433 -110627097 + ETnERV2-int LTR ERVK 7070 7202 -204 1 666 2724 80 19 0 chr12 10630858 10631234 -110626296 - L1_Mus1 LINE L1 0 6567 6185 1 666 340 265 35 70 chr12 10631287 10631429 -110626101 - L1MEe LINE L1 -3795 1059 923 1 666 1265 95 5 45 chr12 10631636 10631835 -110625695 - B2_Mm1t SINE B2 -1 192 2 1 666 2575 77 0 0 chr12 10631893 10632231 -110625299 - ORR1A1 LTR MaLR -8 338 1 1 666 729 220 6 33 chr12 10632431 10632614 -110624916 - Lx7 LINE L1 -1870 5826 5649 1 666 38291 19 6 6 chr12 10633193 10639148 -110618382 - L1Md_A LINE L1 0 6582 622 1 666 1501 164 18 3 chr12 10639720 10640002 -110617528 - Lx3B LINE L1 -41 6932 6647 1 666 381 302 58 94 chr12 10640002 10640225 -110617305 - B3 SINE B2 -1 215 1 1 666 592 284 15 0 chr12 10640246 10640380 -110617150 + B1F SINE Alu 3 138 -11 1 666 376 285 22 58 chr12 10641747 10641885 -110615645 - B1F1 SINE Alu -1 148 16 1 666 207 0 0 0 chr12 10642688 10642711 -110614819 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1 666 423 0 0 0 chr12 10644206 10644253 -110613277 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 666 375 259 198 35 chr12 10644683 10644855 -110612675 + B3 SINE B2 2 201 -15 1 666 240 191 0 0 chr12 10644856 10644903 -110612627 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 666 427 305 46 40 chr12 10645114 10645288 -110612242 + RMER30 DNA MER1_type 26 200 -2 1 666 504 0 0 0 chr12 10646380 10646436 -110611094 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 666 1042 111 0 0 chr12 10646436 10646580 -110610950 - B1_Mus1 SINE Alu -2 146 3 1 666 237 83 0 53 chr12 10646646 10646684 -110610846 + (ATG)n Simple_repeat Simple_repeat 2 37 0 2 666 785 131 7 0 chr12 10646684 10646837 -110610693 + (GGA)n Simple_repeat Simple_repeat 2 155 0 2 666 182 139 0 44 chr12 10646836 10646881 -110610649 + (ATGGTG)n Simple_repeat Simple_repeat 4 46 0 2 666 1154 163 72 0 chr12 10646895 10647104 -110610426 + URR1B DNA MER1_type 1 224 -1 2 666 418 136 25 0 chr12 10647200 10647281 -110610249 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 666 266 309 75 38 chr12 10647757 10648023 -110609507 + L1MEc LINE L1 34 309 -6091 2 666 306 266 127 0 chr12 10648082 10648255 -110609275 + L1MEc LINE L1 5309 5503 -816 2 666 358 314 169 0 chr12 10648258 10648382 -110609148 + B1_Mur4 SINE Alu 1 145 -5 2 666 554 236 45 0 chr12 10648274 10648384 -110609146 + ID_B1 SINE B4 107 221 -3 2 666 404 324 161 18 chr12 10648387 10648786 -110608744 + L1MEc LINE L1 5502 5957 -380 2 666 1728 143 6 33 chr12 10649329 10649685 -110607845 + L1VL4 LINE L1 443 864 -5494 2 666 348 354 44 49 chr12 10649695 10649921 -110607609 + MLT1K LTR MaLR 344 568 -27 2 666 225 347 13 0 chr12 10650119 10650194 -110607336 + ID4 SINE ID 5 80 -3 2 666 567 374 24 20 chr12 10650613 10650864 -110606666 + B4A SINE B4 41 292 0 2 666 225 0 0 0 chr12 10653517 10653542 -110603988 + (A)n Simple_repeat Simple_repeat 1 25 0 2 666 1429 163 44 0 chr12 10653706 10653957 -110603573 - Lx4B LINE L1 -256 6802 6541 2 666 1015 208 69 9 chr12 10653943 10654176 -110603354 + Lx4B LINE L1 6804 7050 -8 2 666 23 33 0 0 chr12 10654207 10654237 -110603293 + AT_rich Low_complexity Low_complexity 1 30 0 2 666 269 344 22 0 chr12 10654621 10654711 -110602819 - MIRb SINE MIR -80 188 97 2 666 21 36 0 0 chr12 10655836 10655864 -110601666 + AT_rich Low_complexity Low_complexity 1 28 0 2 666 181 312 223 0 chr12 10656016 10656081 -110601449 - MIRb SINE MIR -90 178 90 2 666 969 76 32 6 chr12 10656081 10656239 -110601291 + L1_Mus3 LINE L1 6476 6637 -1 2 666 195 286 0 39 chr12 10656239 10656290 -110601240 - MIR SINE MIR -126 82 34 2 666 24 53 0 0 chr12 10656720 10656758 -110600772 + AT_rich Low_complexity Low_complexity 1 38 0 2 666 1102 264 38 65 chr12 10657246 10657695 -110599835 + Lx8 LINE L1 6416 6852 -621 2 666 801 0 0 0 chr12 10658450 10658539 -110598991 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 2 666 5036 59 15 13 chr12 10658552 10659223 -110598307 - L1Md_F2 LINE L1 -2 6580 5909 2 666 240 263 51 26 chr12 10659262 10659340 -110598190 - MLT1A1 LTR MaLR -328 80 1 2 666 468 271 73 21 chr12 10659340 10659508 -110598022 - MTE-int LTR MaLR -53 1527 1350 2 666 1014 250 143 59 chr12 10659508 10659933 -110597597 - Lx9 LINE L1 -1055 6589 6129 2 666 647 263 8 0 chr12 10660080 10660213 -110597317 - ID_B1 SINE B4 -3 221 88 2 666 738 287 37 84 chr12 10661351 10661648 -110595882 + MTEb LTR MaLR 94 376 -3 2 666 265 313 11 11 chr12 10662253 10662341 -110595189 + MIR3 SINE MIR 75 163 -45 2 666 288 0 0 0 chr12 10662341 10662373 -110595157 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 666 324 48 0 0 chr12 10662373 10662414 -110595116 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 666 680 302 58 0 chr12 10662880 10663052 -110594478 - B3 SINE B2 -30 186 5 2 666 768 160 45 45 chr12 10663050 10663207 -110594323 + B2_Mm2 SINE B2 29 185 -10 2 666 197 348 46 82 chr12 10663748 10663942 -110593588 + L2c LINE L2 3200 3386 -1 2 666 1336 220 150 0 chr12 10664123 10664482 -110593048 - MTD LTR MaLR -6 413 1 2 666 1077 124 161 0 chr12 10664803 10664989 -110592541 - URR1A DNA MER1_type -10 216 1 2 666 2205 111 9 3 chr12 10665004 10665321 -110592209 + ORR1A2 LTR MaLR 1 319 -8 2 666 1867 174 22 3 chr12 10666098 10666415 -110591115 + ORR1B2 LTR MaLR 1 323 -44 2 666 1005 300 73 32 chr12 10666437 10666982 -110590548 + Lx6 LINE L1 6478 7414 -46 2 666 285 163 0 0 chr12 10667008 10667057 -110590473 + ORR1B2 LTR MaLR 338 386 -8 2 666 590 312 7 0 chr12 10667751 10667889 -110589641 + RSINE1 SINE B4 3 141 -24 2 666 473 328 128 72 chr12 10668776 10668967 -110588563 - MLT1A1 LTR MaLR -12 396 207 2 666 1521 239 28 17 chr12 10668967 10669328 -110588202 + ORR1D2 LTR MaLR 5 369 -1 2 666 473 328 128 72 chr12 10669328 10669511 -110588019 - MLT1A1 LTR MaLR -202 206 1 2 666 260 269 39 0 chr12 10670961 10671039 -110586491 + L1MD3 LINE L1 7334 7414 -581 2 666 1495 265 112 25 chr12 10671304 10671988 -110585542 + L1MC1 LINE L1 5209 5939 -394 2 666 306 0 0 0 chr12 10671988 10672022 -110585508 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 666 1495 282 133 18 chr12 10672022 10672286 -110585244 + L1MC1 LINE L1 5940 6266 -67 2 666 1014 288 106 30 chr12 10672684 10673017 -110584513 + MTD LTR MaLR 25 403 -16 2 666 207 265 162 0 chr12 10673995 10674063 -110583467 - L3 LINE CR1 -142 4347 4269 2 666 448 203 57 3 chr12 10674359 10674469 -110583061 + B3A SINE B2 11 133 -83 2 666 1276 191 77 99 chr12 10674968 10675370 -110582160 + RLTR9C LTR ERVK 1 393 0 2 666 24 85 0 0 chr12 10675860 10675919 -110581611 + AT_rich Low_complexity Low_complexity 1 59 0 2 666 1871 202 73 101 chr12 10676281 10676827 -110580703 + MT2A LTR ERVL 3 533 0 2 666 483 262 7 14 chr12 10676906 10677053 -110580477 + LTR37A LTR ERV1 225 370 -56 2 666 658 278 43 6 chr12 10679014 10679177 -110578353 + ID_B1 SINE B4 1 169 -55 2 666 224 359 83 55 chr12 10679100 10679209 -110578321 + B1F SINE Alu 7 118 -31 2 666 273 278 84 34 chr12 10680501 10680620 -110576910 + L2c LINE L2 3257 3381 -6 2 666 30520 91 21 12 chr12 10680850 10686979 -110570551 - L1Md_F2 LINE L1 -2 6580 397 2 666 430 319 52 0 chr12 10687085 10687201 -110570329 + RSINE1 SINE B4 18 139 -26 2 666 414 0 0 0 chr12 10687203 10687249 -110570281 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 666 848 243 25 0 chr12 10687322 10687524 -110570006 - B3 SINE B2 -5 211 5 2 666 213 154 26 0 chr12 10688468 10688507 -110569023 + GA-rich Low_complexity Low_complexity 2 41 0 2 666 292 311 30 35 chr12 10689160 10689298 -110568232 - MTEa LTR MaLR -6 373 250 2 666 242 302 88 20 chr12 10689683 10689833 -110567697 - MIRb SINE MIR -102 166 9 2 666 213 188 0 0 chr12 10689917 10689927 -110567603 + (CA)n Simple_repeat Simple_repeat 2 11 0 2 666 420 20 0 0 chr12 10689927 10689976 -110567554 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 2 666 213 188 0 0 chr12 10689976 10690013 -110567517 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 666 619 319 81 28 chr12 10690879 10691127 -110566403 + MER21B LTR ERV1 233 493 -370 2 666 481 294 95 81 chr12 10691164 10691460 -110566070 + MER21B LTR ERV1 564 863 0 2 666 770 58 0 9 chr12 10691639 10691744 -110565786 + (GGAAA)n Simple_repeat Simple_repeat 3 106 0 2 666 894 193 56 9 chr12 10694067 10694281 -110563249 - URR1A DNA MER1_type 0 226 3 2 666 29 84 0 0 chr12 10694449 10694520 -110563010 + AT_rich Low_complexity Low_complexity 1 71 0 2 666 378 0 0 0 chr12 10697250 10697292 -110560238 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 666 275 0 29 0 chr12 10697292 10697326 -110560204 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 666 25 0 0 0 chr12 10697602 10697627 -110559903 + AT_rich Low_complexity Low_complexity 1 25 0 2 666 1019 173 114 10 chr12 10697752 10697945 -110559585 + URR1B DNA MER1_type 1 213 -12 2 666 300 70 0 0 chr12 10698461 10698504 -110559026 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 666 231 276 17 0 chr12 10698504 10698562 -110558968 + GA-rich Low_complexity Low_complexity 2 60 0 2 666 731 327 39 31 chr12 10698679 10699067 -110558463 + L1MDa LINE L1 1584 1978 -4655 2 666 838 239 59 5 chr12 10699067 10699269 -110558261 - B3 SINE B2 -1 215 3 2 666 731 327 39 31 chr12 10699269 10699337 -110558193 + L1MDa LINE L1 1979 2044 -4589 2 666 455 337 39 94 chr12 10699729 10700092 -110557438 - MLT1A0 LTR MaLR -12 353 11 2 666 264 122 0 0 chr12 10700162 10700203 -110557327 + (T)n Simple_repeat Simple_repeat 1 41 0 2 666 1183 68 0 0 chr12 10700203 10700350 -110557180 - B1_Mm SINE Alu 0 147 1 2 666 525 133 0 0 chr12 10700419 10700517 -110557013 + (GA)n Simple_repeat Simple_repeat 2 99 0 2 666 305 273 13 0 chr12 10700519 10700596 -110556934 + L1MDa LINE L1 2333 2410 -4223 2 666 734 61 0 0 chr12 10700597 10700695 -110556835 - L1Md_F2 LINE L1 -512 6070 5973 2 666 610 41 0 30 chr12 10700695 10700795 -110556735 + L1Md_T LINE L1 6484 6580 -2 2 666 698 318 102 76 chr12 10701257 10701611 -110555919 + MLT2B2 LTR ERVL 18 380 -135 2 666 1686 223 181 24 chr12 10701738 10701897 -110555633 - RMER15 LTR ERVL -1 574 404 2 666 3324 61 0 0 chr12 10701897 10702306 -110555224 - L1_Mus1 LINE L1 0 6567 6159 2 666 1686 223 181 24 chr12 10702306 10702642 -110554888 - RMER15 LTR ERVL -172 403 1 2 666 182 364 24 40 chr12 10703228 10703354 -110554176 + L4 LINE RTE 410 533 -1496 2 666 33639 48 0 3 chr12 10704731 10710114 -110547416 + L1Md_T LINE L1 126 5589 -297 2 666 8473 32 0 0 chr12 10710114 10711110 -110546420 + L1Md_T LINE L1 5590 6585 0 2 666 7674 38 0 0 chr12 10711593 10712874 -110544656 - L1Md_T LINE L1 0 6582 5302 2 666 245 266 41 53 chr12 10713162 10713283 -110544247 + MLT1H1 LTR MaLR 423 537 -32 2 666 180 0 0 0 chr12 10713289 10713309 -110544221 + (T)n Simple_repeat Simple_repeat 1 20 0 2 666 8173 99 39 49 chr12 10714266 10716420 -110541110 + L1_Mus3 LINE L1 4499 6631 -7 2 666 23 0 0 0 chr12 10716909 10716932 -110540598 + AT_rich Low_complexity Low_complexity 1 23 0 2 666 198 0 0 0 chr12 10718147 10718169 -110539361 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 666 548 133 139 17 chr12 10718169 10718284 -110539246 - B1F2 SINE Alu -12 137 9 2 666 304 304 28 117 chr12 10718185 10718364 -110539166 - MT2B2 LTR ERVL -322 262 100 2 666 616 197 8 41 chr12 10718396 10718518 -110539012 + PB1D9 SINE Alu 2 119 -1 2 666 287 276 182 22 chr12 10718518 10718530 -110539000 + B4 SINE B4 87 242 -50 2 666 201 266 136 25 chr12 10719287 10719368 -110538162 - MIRm SINE MIR -30 246 157 2 666 207 0 0 0 chr12 10719573 10719596 -110537934 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 666 389 289 88 128 chr12 10720340 10720645 -110536885 - LTR37B LTR ERV1 0 468 176 3 666 605 232 232 0 chr12 10720666 10720847 -110536683 + URR1A DNA MER1_type 1 223 -3 3 666 261 0 0 0 chr12 10720931 10720960 -110536570 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 666 632 227 15 15 chr12 10721317 10721451 -110536079 - B1F SINE Alu -8 141 8 3 666 662 256 11 43 chr12 10722211 10722399 -110535131 + B3A SINE B2 1 182 -16 3 666 230 325 46 109 chr12 10722402 10722640 -110534890 + B4A SINE B4 70 292 0 3 666 554 246 11 23 chr12 10723335 10723510 -110534020 + L1MB7 LINE L1 5783 5955 -229 3 666 997 277 77 20 chr12 10723715 10724065 -110533465 + ORR1D2 LTR MaLR 1 370 0 3 666 22 0 0 0 chr12 10724234 10724256 -110533274 + AT_rich Low_complexity Low_complexity 1 22 0 3 666 25 83 0 0 chr12 10725219 10725279 -110532251 + AT_rich Low_complexity Low_complexity 1 60 0 3 666 873 54 0 0 chr12 10725626 10725737 -110531793 + (GA)n Simple_repeat Simple_repeat 2 112 0 3 666 25 31 0 0 chr12 10726411 10726443 -110531087 + AT_rich Low_complexity Low_complexity 1 32 0 3 666 25 0 0 0 chr12 10726462 10726487 -110531043 + AT_rich Low_complexity Low_complexity 1 25 0 3 666 7360 89 25 9 chr12 10727004 10728065 -110529465 - Lx3_Mus LINE L1 0 7009 5932 3 666 531 68 0 0 chr12 10728065 10728139 -110529391 + Lx3_Mus LINE L1 6255 6328 -681 3 666 21 0 0 0 chr12 10728727 10728748 -110528782 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 253 68 22 22 chr12 10728786 10728831 -110528699 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 666 569 317 50 120 chr12 10728960 10729336 -110528194 - MTD LTR MaLR -65 354 5 3 666 228 372 11 0 chr12 10729363 10729457 -110528073 - RMER15 LTR ERVL -110 465 371 3 666 1436 270 87 0 chr12 10729457 10729917 -110527613 - Lx8 LINE L1 -239 7234 6735 3 666 297 0 0 0 chr12 10730945 10730978 -110526552 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 666 1738 248 25 8 chr12 10731482 10731493 -110526037 + MTD LTR MaLR 1 11 -408 3 666 252 0 0 0 chr12 10731493 10731521 -110526009 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 666 1738 246 28 6 chr12 10731521 10731920 -110525610 + MTD LTR MaLR 12 404 -15 3 666 940 269 44 4 chr12 10731924 10732174 -110525356 - Lx8 LINE L1 -875 6598 6339 3 666 295 280 57 48 chr12 10732394 10732518 -110525012 - MER3 DNA MER1_type 0 209 85 3 666 24 0 0 0 chr12 10732761 10732785 -110524745 + AT_rich Low_complexity Low_complexity 1 24 0 3 666 452 269 6 18 chr12 10732794 10732957 -110524573 - L1MA6 LINE L1 -10 6290 6130 3 666 204 149 0 0 chr12 10732966 10733013 -110524517 + (T)n Simple_repeat Simple_repeat 1 47 0 3 666 213 39 0 0 chr12 10733025 10733051 -110524479 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 3 666 542 250 92 0 chr12 10733067 10733187 -110524343 - ID_B1 SINE B4 -8 216 86 3 666 375 272 57 45 chr12 10733290 10733467 -110524063 - L1MA6 LINE L1 -289 6011 5833 3 666 226 277 60 30 chr12 10734858 10734925 -110522605 + B1F SINE Alu 69 137 -12 3 666 423 0 0 0 chr12 10736065 10736112 -110521418 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 666 23 33 0 0 chr12 10736187 10736217 -110521313 + AT_rich Low_complexity Low_complexity 1 30 0 3 666 2000 138 36 6 chr12 10736232 10736568 -110520962 - Lx3B LINE L1 -4 6969 6624 3 666 283 311 9 37 chr12 10736749 10736856 -110520674 - MIRb SINE MIR -34 234 131 3 666 3718 150 30 70 chr12 10736890 10737219 -110520311 - RMER6A LTR ERVK 0 756 429 3 666 836 87 0 8 chr12 10737219 10737347 -110520183 + (TTCTCC)n Simple_repeat Simple_repeat 6 132 0 3 666 3718 150 30 70 chr12 10737347 10737804 -110519726 - RMER6A LTR ERVK -328 428 1 3 666 1320 59 0 0 chr12 10738874 10739043 -110518487 - L1_Mus1 LINE L1 0 6567 6399 3 666 30 27 0 0 chr12 10740179 10740216 -110517314 + AT_rich Low_complexity Low_complexity 1 37 0 3 666 407 324 63 49 chr12 10740258 10740544 -110516986 - B4A SINE B4 -2 290 1 3 666 356 130 14 0 chr12 10741061 10741130 -110516400 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 666 314 316 36 14 chr12 10741176 10741314 -110516216 - HAL1-3A_ME LINE L1 -742 2116 1976 3 666 610 281 58 44 chr12 10741366 10741641 -110515889 - B4A SINE B4 -12 280 2 3 666 223 273 0 18 chr12 10741851 10741907 -110515623 + GA-rich Low_complexity Low_complexity 2 56 0 3 666 195 315 47 91 chr12 10742141 10742262 -110515268 + L2c LINE L2 3292 3425 -1 3 666 504 0 0 0 chr12 10742424 10742480 -110515050 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 666 1329 58 0 0 chr12 10742674 10742845 -110514685 + (TTCC)n Simple_repeat Simple_repeat 3 173 0 3 666 26 30 0 0 chr12 10742967 10743000 -110514530 + AT_rich Low_complexity Low_complexity 1 33 0 3 666 3175 154 20 26 chr12 10744533 10745078 -110512452 + RLTR1D LTR ERV1 64 605 0 3 666 2903 90 5 7 chr12 10745178 10745582 -110511948 - RLTR9D LTR ERVK 0 403 1 3 666 239 349 29 72 chr12 10745700 10745839 -110511691 - LTR16A LTR ERVL -94 357 225 3 666 4494 63 51 0 chr12 10746116 10746875 -110510655 - L1_Mus2 LINE L1 -349 6217 5431 3 666 2507 72 3 21 chr12 10746875 10747213 -110510317 + L1_Mus2 LINE L1 6235 6566 0 3 666 431 319 77 36 chr12 10747641 10747888 -110509642 + HAL1 LINE L1 1562 1818 -689 3 667 393 141 0 0 chr12 10747979 10748050 -110509480 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 667 198 0 0 0 chr12 10748107 10748129 -110509401 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 667 180 161 48 0 chr12 10749028 10749090 -110508440 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 3 667 1761 98 0 48 chr12 10749349 10749660 -110507870 + L1VL4 LINE L1 603 898 -5404 3 667 3456 156 22 41 chr12 10749660 10750300 -110507230 + RLTR5_Mm LTR ERV1 1 628 0 3 667 9246 86 18 32 chr12 10750300 10751041 -110506489 + MusHAL1 LINE L1 48 799 -1913 3 667 3150 62 5 2 chr12 10751041 10751448 -110506082 + L1_Mus1 LINE L1 6159 6566 -1 3 667 9246 86 18 32 chr12 10751448 10752225 -110505305 + MusHAL1 LINE L1 800 1545 -1167 3 667 3346 63 2 0 chr12 10752221 10752712 -110504818 + L1_Mus2 LINE L1 5544 6035 -531 3 667 351 152 0 0 chr12 10753013 10753092 -110504438 + GA-rich Low_complexity Low_complexity 2 80 0 3 667 289 345 103 26 chr12 10754104 10754336 -110503194 + MIR SINE MIR 7 256 -6 3 667 22001 177 46 60 chr12 10754922 10756575 -110500955 + Lx LINE L1 375 2049 -3828 3 667 327 85 0 0 chr12 10756575 10756622 -110500908 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 667 22001 137 28 93 chr12 10756622 10758044 -110499486 + Lx LINE L1 2050 3477 -2400 3 667 438 0 48 0 chr12 10758044 10758106 -110499424 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 3 667 22001 123 21 67 chr12 10758106 10761623 -110495907 + Lx LINE L1 3478 6643 -11 3 667 4601 184 37 72 chr12 10761623 10761704 -110495826 - MTC-int LTR MaLR -206 1052 973 3 667 1113 50 0 66 chr12 10761704 10761855 -110495675 + B1_Mus1 SINE Alu 2 142 -6 3 667 609 14 0 0 chr12 10761856 10761926 -110495604 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 667 4601 184 37 72 chr12 10761926 10762440 -110495090 - MTC-int LTR MaLR -286 972 452 3 667 810 0 0 0 chr12 10762440 10762530 -110495000 + (TTC)n Simple_repeat Simple_repeat 3 92 0 3 667 4601 184 37 72 chr12 10762530 10763021 -110494509 - MTC-int LTR MaLR -807 451 8 3 667 633 231 16 8 chr12 10763141 10763287 -110494243 + MTD LTR MaLR 259 405 -14 3 667 519 306 92 25 chr12 10763321 10763714 -110493816 + L1MB7 LINE L1 5706 6124 -60 3 667 1011 302 75 90 chr12 10764024 10764550 -110492980 - RLTR18 LTR ERVK 0 616 94 3 667 237 33 0 0 chr12 10764550 10764580 -110492950 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 667 1011 302 75 90 chr12 10764580 10764678 -110492852 - RLTR18 LTR ERVK -523 93 1 3 667 2228 184 27 15 chr12 10764678 10765152 -110492378 - RLTR18-int LTR ERVK 0 5361 4882 3 667 207 0 0 0 chr12 10765322 10765345 -110492185 + (CCA)n Simple_repeat Simple_repeat 1 23 0 3 667 423 0 0 0 chr12 10765547 10765594 -110491936 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 667 540 0 0 0 chr12 10765594 10765653 -110491877 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 667 3471 20 5 0 chr12 10765653 10766046 -110491484 + MTA_Mm LTR MaLR 2 396 0 3 667 718 278 0 33 chr12 10767754 10767936 -110489594 - B3A SINE B2 -16 182 7 3 667 21 0 0 0 chr12 10768128 10768149 -110489381 + AT_rich Low_complexity Low_complexity 1 21 0 3 667 1512 182 106 11 chr12 10769256 10769606 -110487924 + ORR1C2 LTR MaLR 2 384 0 3 667 1454 259 94 30 chr12 10769718 10770099 -110487431 + RMER19C LTR ERVK 22 493 -118 3 667 5796 65 8 31 chr12 10770099 10770880 -110486650 - L1Md_F2 LINE L1 0 6582 5820 3 667 1454 257 91 27 chr12 10770880 10770987 -110486543 + RMER19C LTR ERVK 494 610 -1 3 667 895 192 86 9 chr12 10771260 10771470 -110486060 + URR1A DNA MER1_type 1 226 0 3 667 1170 86 0 4 chr12 10771952 10772173 -110485357 + (TCC)n Simple_repeat Simple_repeat 1 220 0 3 667 560 73 0 12 chr12 10772165 10772248 -110485282 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 3 667 407 25 0 129 chr12 10773453 10773546 -110483984 + GA-rich Low_complexity Low_complexity 2 82 0 3 667 396 0 0 0 chr12 10773665 10773709 -110483821 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 667 1147 58 0 0 chr12 10773712 10773851 -110483679 - B1_Mm SINE Alu -7 140 2 3 667 356 243 88 0 chr12 10774294 10774430 -110483100 + L1MC LINE L1 3731 3878 -2268 3 667 4618 170 42 18 chr12 10774689 10775576 -110481954 + RMER13B LTR ERVK 1 908 0 3 667 2701 265 101 30 chr12 10775723 10776765 -110480765 + Lx8 LINE L1 6352 7467 -6 3 667 336 298 73 45 chr12 10776768 10776947 -110480583 + L1MC LINE L1 4955 5138 -1008 3 667 374 292 162 15 chr12 10776955 10777295 -110480235 + L1MC LINE L1 5257 5646 -687 3 667 24 53 0 0 chr12 10777377 10777415 -110480115 + AT_rich Low_complexity Low_complexity 1 38 0 3 667 450 53 0 0 chr12 10778272 10778329 -110479201 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 667 192 378 59 39 chr12 10778628 10778730 -110478800 - L2b LINE L2 -213 3162 3059 3 667 205 284 100 57 chr12 10778801 10778944 -110478586 - MIR SINE MIR -118 150 6 3 667 7201 74 4 8 chr12 10779232 10780567 -110476963 - L1_Mus2 LINE L1 0 6566 5239 3 667 5187 127 10 1 chr12 10780624 10782040 -110475490 - L1_Mus2 LINE L1 -3781 2102 675 3 667 478 307 23 167 chr12 10783084 10783357 -110474173 + MTE-int LTR MaLR 759 1241 -722 3 667 351 316 0 21 chr12 10783662 10783759 -110473771 - ID_B1 SINE B4 -39 185 91 3 667 1050 259 63 50 chr12 10783899 10784302 -110473228 - RLTR17 LTR ERVK -242 450 105 3 667 420 299 21 0 chr12 10784302 10784399 -110473131 - ID_B1 SINE B4 -124 100 2 3 667 247 238 118 12 chr12 10784768 10784853 -110472677 + MIR3 SINE MIR 85 178 -30 3 667 256 344 8 60 chr12 10785114 10785241 -110472289 - MIRm SINE MIR -78 190 66 4 667 362 298 0 19 chr12 10785283 10785389 -110472141 - MLT1A1 LTR MaLR 0 408 305 4 667 899 294 54 57 chr12 10786346 10786699 -110470831 - ORR1E LTR MaLR -5 354 3 4 667 342 0 0 0 chr12 10787090 10787128 -110470402 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 4 667 380 286 233 38 chr12 10789145 10789407 -110468123 + MER44A DNA MER2_type 24 336 -3 4 667 885 209 19 56 chr12 10789407 10789613 -110467917 - URR1B DNA MER1_type -27 198 1 4 667 536 53 13 0 chr12 10789641 10789717 -110467813 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 4 667 243 0 0 0 chr12 10789717 10789743 -110467787 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 667 330 26 0 0 chr12 10790135 10790174 -110467356 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 667 270 281 146 13 chr12 10790874 10791271 -110466259 + L1ME2 LINE L1 1135 1584 -4816 4 667 348 230 81 0 chr12 10791285 10791359 -110466171 + B1_Mur1 SINE Alu 70 149 0 4 667 273 271 0 0 chr12 10791702 10791772 -110465758 + L1ME2 LINE L1 5043 5112 -1207 4 667 306 0 0 0 chr12 10791815 10791849 -110465681 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 667 443 274 124 0 chr12 10792021 10792134 -110465396 + RSINE1 SINE B4 26 152 -13 4 667 693 66 0 0 chr12 10792207 10792298 -110465232 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 667 21 0 0 0 chr12 10792455 10792476 -110465054 + AT_rich Low_complexity Low_complexity 1 21 0 4 667 756 245 89 15 chr12 10792539 10792742 -110464788 + ID_B1 SINE B4 2 219 -5 4 667 437 293 27 16 chr12 10792893 10793077 -110464453 + L1ME2 LINE L1 5681 5866 -486 4 667 450 292 50 65 chr12 10793156 10793497 -110464033 + L1ME2 LINE L1 5995 6335 -2 4 667 681 255 29 86 chr12 10793538 10793748 -110463782 + B3A SINE B2 1 198 0 4 667 25 0 0 0 chr12 10793853 10793878 -110463652 + AT_rich Low_complexity Low_complexity 1 25 0 4 667 563 39 26 0 chr12 10795266 10795343 -110462187 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 4 667 6849 110 19 7 chr12 10795495 10796669 -110460861 - Lx LINE L1 0 6654 5467 4 667 207 315 73 18 chr12 10798847 10798957 -110458573 - MIR3 SINE MIR -15 193 78 4 667 1032 91 0 0 chr12 10799049 10799203 -110458327 + (TG)n Simple_repeat Simple_repeat 2 155 0 4 667 276 240 0 0 chr12 10799224 10799324 -110458206 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 667 748 280 146 39 chr12 10800926 10801186 -110456344 + B4 SINE B4 5 292 0 4 667 827 289 132 78 chr12 10801906 10802288 -110455242 + MTE2a LTR MaLR 1 375 -4 4 667 209 238 0 0 chr12 10802466 10802508 -110455022 - MER91C DNA Tip100 -81 59 18 4 667 238 0 81 0 chr12 10803959 10803996 -110453534 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 4 667 14193 20 0 1 chr12 10804050 10805779 -110451751 + L1Md_A LINE L1 3858 5585 -298 4 667 8436 33 1 0 chr12 10805780 10806773 -110450757 + L1Md_A LINE L1 5587 6580 -2 4 667 255 272 112 37 chr12 10807366 10807473 -110450057 - MLT1K LTR MaLR -84 511 397 4 667 21 0 0 0 chr12 10808008 10808029 -110449501 + AT_rich Low_complexity Low_complexity 1 21 0 4 667 384 284 17 69 chr12 10808295 10808469 -110449061 - ORR1D2 LTR MaLR 0 370 206 4 667 210 171 0 0 chr12 10809289 10809330 -110448200 + GA-rich Low_complexity Low_complexity 1 41 0 4 667 1616 296 44 39 chr12 10809335 10809871 -110447659 - Lx9 LINE L1 -644 7000 6462 4 667 1691 65 17 13 chr12 10809871 10810105 -110447425 - L1Md_F2 LINE L1 0 6582 6348 4 667 1616 296 44 39 chr12 10810105 10810314 -110447216 - Lx9 LINE L1 -1183 6461 6251 4 667 4510 228 16 11 chr12 10810375 10811351 -110446179 - Lx5 LINE L1 -5 7045 6065 4 667 515 261 124 64 chr12 10811762 10812012 -110445518 - B4 SINE B4 -22 270 6 4 667 200 290 72 0 chr12 10812368 10812437 -110445093 + MIRc SINE MIR 71 144 -124 4 667 204 274 13 27 chr12 10813658 10813733 -110443797 + CT-rich Low_complexity Low_complexity 2 75 0 4 667 28 48 0 0 chr12 10814455 10814497 -110443033 + AT_rich Low_complexity Low_complexity 1 42 0 4 667 26 0 0 0 chr12 10814564 10814590 -110442940 + AT_rich Low_complexity Low_complexity 1 26 0 4 667 471 217 31 148 chr12 10814617 10814779 -110442751 + B1_Mur1 SINE Alu 1 143 -6 4 667 756 160 7 37 chr12 10815766 10815902 -110441628 + B1_Mur3 SINE Alu 5 136 -13 4 667 708 228 158 16 chr12 10816679 10816862 -110440668 + B3 SINE B2 2 210 -6 4 667 216 170 0 0 chr12 10816956 10817009 -110440521 + GA-rich Low_complexity Low_complexity 1 53 0 4 667 24 0 0 0 chr12 10817348 10817372 -110440158 + AT_rich Low_complexity Low_complexity 1 24 0 4 667 207 0 0 0 chr12 10817505 10817528 -110440002 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 667 261 0 0 0 chr12 10817528 10817556 -110439974 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 667 250 247 50 150 chr12 10817556 10817656 -110439874 - B3 SINE B2 -125 91 2 4 667 297 51 0 0 chr12 10818493 10818532 -110438998 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 667 1778 144 177 22 chr12 10818565 10818884 -110438646 + MTC LTR MaLR 4 383 -38 4 667 3033 69 41 3 chr12 10818884 10819276 -110438254 + MTB_Mm LTR MaLR 1 407 0 4 667 1778 144 177 22 chr12 10819276 10819318 -110438212 + MTC LTR MaLR 384 421 0 4 667 450 0 0 0 chr12 10819336 10819386 -110438144 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 667 471 35 0 0 chr12 10819925 10819982 -110437548 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 667 225 380 124 24 chr12 10820544 10820754 -110436776 - MIR SINE MIR -21 241 11 4 667 5121 212 49 15 chr12 10820812 10821992 -110435538 + Lx5 LINE L1 5825 7044 -6 4 667 3556 68 34 4 chr12 10821994 10822467 -110435063 + L1Md_F2 LINE L1 6095 6581 -1 4 667 490 336 0 16 chr12 10822467 10822594 -110434936 + MTEa LTR MaLR 51 175 -184 4 667 2101 207 39 165 chr12 10822598 10823258 -110434272 + RMER19C LTR ERVK 1 577 -34 4 667 619 266 6 50 chr12 10823277 10823459 -110434071 + MTEa LTR MaLR 206 379 0 4 667 567 175 10 0 chr12 10823843 10823940 -110433590 + GA-rich Low_complexity Low_complexity 4 101 0 4 667 822 113 7 14 chr12 10823941 10824085 -110433445 + (GGAGA)n Simple_repeat Simple_repeat 4 146 0 4 667 1354 45 11 0 chr12 10824085 10824263 -110433267 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 4 667 23 33 0 0 chr12 10825215 10825245 -110432285 + AT_rich Low_complexity Low_complexity 1 30 0 4 667 406 290 75 31 chr12 10825721 10825881 -110431649 + MER58A DNA MER1_type 48 214 -10 4 667 2551 337 123 32 chr12 10825889 10827185 -110430345 + FordPrefect DNA Tip100 225 1638 -45 4 667 252 321 86 24 chr12 10827286 10827513 -110430017 + MIRc SINE MIR 30 265 -3 4 667 3640 54 0 11 chr12 10827532 10827998 -110429532 - L1Md_F2 LINE L1 -10 6572 6112 4 667 243 368 8 17 chr12 10828084 10828203 -110429327 - MIRb SINE MIR -120 148 31 4 667 23 33 0 0 chr12 10828234 10828264 -110429266 + AT_rich Low_complexity Low_complexity 1 30 0 4 667 241 321 12 0 chr12 10828845 10828929 -110428601 + B3A SINE B2 1 85 -113 4 667 226 239 0 0 chr12 10829119 10829165 -110428365 + (CATA)n Simple_repeat Simple_repeat 4 49 0 4 667 395 83 0 62 chr12 10829165 10829229 -110428301 + HAL1-3A_ME LINE L1 1976 2035 -823 4 667 182 309 32 124 chr12 10829344 10829529 -110428001 - L3 LINE CR1 -218 4271 4104 4 667 570 163 0 0 chr12 10829564 10829705 -110427825 + CT-rich Low_complexity Low_complexity 2 142 0 4 667 467 350 11 17 chr12 10830412 10830592 -110426938 + MER5A DNA MER1_type 11 189 0 4 667 208 312 35 35 chr12 10830597 10830710 -110426820 + MIRb SINE MIR 114 226 -42 4 667 570 299 27 0 chr12 10830762 10830909 -110426621 + ID_B1 SINE B4 8 158 -66 4 667 807 217 0 32 chr12 10830911 10831101 -110426429 + Lx7 LINE L1 5593 5776 -1920 4 667 332 316 51 7 chr12 10831404 10831541 -110425989 - RMER15 LTR ERVL -31 544 402 4 667 699 339 109 8 chr12 10832733 10833117 -110424413 - MLT1D LTR MaLR -79 426 4 4 667 193 351 26 13 chr12 10834081 10834159 -110423371 - MIRc SINE MIR -115 153 75 4 667 543 354 61 13 chr12 10835006 10835235 -110422295 + RMER15 LTR ERVL 336 575 0 4 667 4466 135 92 23 chr12 10836185 10837025 -110420505 + L1Md_T LINE L1 308 1205 -5411 4 667 31158 38 0 2 chr12 10837031 10839516 -110418014 + L1Md_T LINE L1 1170 3654 -2229 4 667 3426 37 84 37 chr12 10839516 10839970 -110417560 - IAPLTR2_Mm LTR ERVK 0 475 1 4 667 31158 35 0 2 chr12 10839970 10841259 -110416271 + L1Md_T LINE L1 3655 4937 -946 4 667 8641 49 1 0 chr12 10841263 10842257 -110415273 + L1Md_T LINE L1 5588 6582 0 4 667 6067 107 64 4 chr12 10842933 10844522 -110413008 + L1_Mus1 LINE L1 451 2135 -3748 4 667 7709 79 14 5 chr12 10844512 10845959 -110411571 + L1_Mus1 LINE L1 5109 6567 0 4 667 267 236 0 0 chr12 10845977 10846032 -110411498 - L1MC LINE L1 -2298 3848 3794 4 667 195 42 0 0 chr12 10846032 10846056 -110411474 + (CATA)n Simple_repeat Simple_repeat 1 24 0 4 667 375 78 0 0 chr12 10846056 10846106 -110411424 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 667 247 317 54 34 chr12 10846170 10846317 -110411213 - MLT2E LTR ERVL -14 614 465 4 667 1095 139 0 0 chr12 10847347 10847527 -110410003 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 667 507 300 60 20 chr12 10848175 10848427 -110409103 + L1MC4 LINE L1 7775 8036 -6 4 667 243 0 0 0 chr12 10848774 10848801 -110408729 + (T)n Simple_repeat Simple_repeat 1 27 0 4 667 1444 236 79 3 chr12 10848809 10849149 -110408381 + MTD LTR MaLR 54 419 0 4 667 1203 56 0 36 chr12 10849198 10849365 -110408165 - L1_Mus2 LINE L1 -1 6565 6405 4 667 638 319 63 63 chr12 10849504 10849838 -110407692 - ORR1E LTR MaLR -8 351 18 4 667 1060 75 20 16 chr12 10850838 10851090 -110406440 + (TC)n Simple_repeat Simple_repeat 1 253 0 4 667 867 231 80 0 chr12 10852381 10852580 -110404950 - ID_B1 SINE B4 -6 218 4 4 667 809 135 102 6 chr12 10852892 10853049 -110404481 + URR1A DNA MER1_type 55 226 0 4 667 243 337 95 0 chr12 10853363 10853458 -110404072 + L3 LINE CR1 3440 3543 -946 4 667 715 103 0 67 chr12 10853471 10853606 -110403924 - L1Md_F3 LINE L1 0 6584 6459 4 667 763 157 0 2 chr12 10853606 10853748 -110403782 + L1_Mus1 LINE L1 6108 6203 -364 4 667 783 306 13 4 chr12 10854027 10854260 -110403270 + Lx8 LINE L1 6730 6964 -509 4 667 4374 202 98 89 chr12 10854309 10855505 -110402025 + Lx4B LINE L1 5835 7041 -17 5 667 406 326 13 76 chr12 10855650 10855886 -110401644 + L3 LINE CR1 3996 4216 -273 4 667 7186 72 38 1 chr12 10855901 10857048 -110400482 + L1_Mus1 LINE L1 5381 6567 0 5 667 224 236 0 0 chr12 10857051 10857106 -110400424 + A-rich Low_complexity Low_complexity 1 55 0 5 667 214 311 159 32 chr12 10857384 10857510 -110400020 - MIR3 SINE MIR -62 146 5 5 667 187 256 35 93 chr12 10857745 10857831 -110399699 - L2c LINE L2 -55 3332 3252 5 667 895 251 59 64 chr12 10858565 10858970 -110398560 - L1MA7 LINE L1 -7 6284 5882 5 667 3529 40 2 2 chr12 10859227 10859623 -110397907 - MTA_Mm LTR MaLR 0 396 1 5 667 1861 204 14 22 chr12 10859718 10860089 -110397441 - Lx4B LINE L1 -2 7056 6689 5 667 293 250 11 0 chr12 10861715 10861807 -110395723 + GA-rich Low_complexity Low_complexity 3 95 0 5 667 242 206 0 16 chr12 10862524 10862588 -110394942 + GA-rich Low_complexity Low_complexity 5 67 0 5 667 4541 125 126 32 chr12 10862644 10863004 -110394526 + RMER17D LTR ERVK 3 353 -536 5 667 800 29 0 19 chr12 10863004 10863108 -110394422 + (TCTCC)n Simple_repeat Simple_repeat 4 105 0 5 667 4541 125 126 32 chr12 10863108 10863556 -110393974 + RMER17D LTR ERVK 354 887 -2 5 667 2595 197 91 43 chr12 10863634 10864217 -110393313 - RMER19C LTR ERVK 0 611 1 5 667 3000 45 3 3 chr12 10864238 10864591 -110392939 + L1Md_F3 LINE L1 6229 6581 -3 5 667 1381 151 84 0 chr12 10864689 10864928 -110392602 + MT2B LTR ERVL 1 259 -342 5 667 2316 208 96 128 chr12 10864723 10865260 -110392270 + ORR1B1-int LTR MaLR 646 1132 -831 5 667 924 72 0 0 chr12 10865260 10865385 -110392145 + (GGAGAA)n Simple_repeat Simple_repeat 1 125 0 5 667 2316 208 96 128 chr12 10865385 10865681 -110391849 + ORR1B1-int LTR MaLR 1133 1452 -511 5 667 1137 181 14 19 chr12 10865673 10865887 -110391643 + ORR1B1 LTR MaLR 182 394 0 5 667 1354 265 7 3 chr12 10865887 10866175 -110391355 - Lx6 LINE L1 -195 7265 6977 5 667 624 302 33 6 chr12 10866153 10866333 -110391197 + Lx6 LINE L1 6538 6722 -738 5 667 746 167 43 0 chr12 10866451 10866589 -110390941 - B1_Mur3 SINE Alu -1 148 5 5 667 277 263 33 119 chr12 10866484 10866635 -110390895 - MT2B2 LTR ERVL -320 264 127 5 667 852 278 24 0 chr12 10866712 10866917 -110390613 - B3 SINE B2 -2 214 5 5 667 186 47 44 44 chr12 10867279 10867324 -110390206 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 5 667 341 311 129 0 chr12 10867340 10867472 -110390058 - B1F SINE Alu 0 149 1 5 667 413 276 19 9 chr12 10867503 10867609 -110389921 + PB1D10 SINE Alu 9 115 -2 5 667 211 262 17 70 chr12 10869250 10869365 -110388165 + (TGGG)n Simple_repeat Simple_repeat 4 112 0 5 667 1020 262 47 14 chr12 10869367 10869646 -110387884 - B4A SINE B4 -3 289 2 5 667 183 26 49 49 chr12 10869994 10870035 -110387495 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 5 667 214 256 0 0 chr12 10871456 10871495 -110386035 + B2_Mm1t SINE B2 2 40 -153 5 667 456 98 21 21 chr12 10871553 10871647 -110385883 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 5 667 301 287 55 62 chr12 10871889 10872037 -110385493 + L2b LINE L2 3026 3176 -250 5 667 912 286 55 21 chr12 10872454 10872690 -110384840 + B4A SINE B4 3 246 -46 5 667 809 286 41 32 chr12 10873217 10873586 -110383944 - L1MB1 LINE L1 -265 5924 5553 5 667 207 306 11 34 chr12 10874368 10874456 -110383074 + GA-rich Low_complexity Low_complexity 2 87 0 5 667 3587 28 13 0 chr12 10876594 10876985 -110380545 - MTA_Mm LTR MaLR 0 396 1 5 667 321 117 0 0 chr12 10877464 10877524 -110380006 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 667 4433 70 0 2 chr12 10877650 10878180 -110379350 - L1_Mus1 LINE L1 0 6567 6039 5 667 2275 50 0 0 chr12 10878180 10878459 -110379071 + L1_Mus1 LINE L1 5737 6015 -552 5 667 625 320 49 27 chr12 10878459 10878684 -110378846 - B4A SINE B4 -62 230 1 5 83 449 333 126 76 chr12 10878886 10879804 -110377726 + L2a LINE L2 668 1631 -1788 5 668 199 227 68 0 chr12 10879824 10879868 -110377662 + L2a LINE L2 2807 2853 -566 5 668 387 0 0 0 chr12 10879876 10879919 -110377611 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 668 244 375 0 0 chr12 10879938 10880002 -110377528 - B4A SINE B4 -2 290 227 5 668 438 75 0 0 chr12 10880008 10880075 -110377455 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 5 668 383 137 0 14 chr12 10880081 10880155 -110377375 + CT-rich Low_complexity Low_complexity 4 76 0 5 668 344 309 20 10 chr12 10880194 10880292 -110377238 - B4 SINE B4 -73 219 121 5 668 534 304 36 22 chr12 10880405 10880543 -110376987 - RSINE1 SINE B4 -22 143 4 5 668 292 279 23 11 chr12 10880547 10880634 -110376896 - B4A SINE B4 -200 92 5 5 668 382 312 174 24 chr12 10880693 10881119 -110376411 + L2a LINE L2 2923 3412 -14 5 668 216 347 20 0 chr12 10881785 10881883 -110375647 + L2a LINE L2 3305 3404 -22 5 668 241 347 44 22 chr12 10883207 10883434 -110374096 + L1M5 LINE L1 4074 4305 -1841 5 668 473 332 102 19 chr12 10884062 10884435 -110373095 + L1M5 LINE L1 5031 5432 -692 5 668 376 232 79 18 chr12 10884471 10884585 -110372945 + L1MC3 LINE L1 6920 7040 -745 5 668 1411 245 78 17 chr12 10884649 10885006 -110372524 + MTEa LTR MaLR 1 379 0 5 668 387 250 140 0 chr12 10885041 10885141 -110372389 + ID_B1 SINE B4 98 211 -13 5 668 939 204 8 0 chr12 10885263 10885514 -110372016 + GA-rich Low_complexity Low_complexity 1 253 0 5 668 652 296 26 22 chr12 10885519 10885747 -110371783 + L1MC3 LINE L1 7187 7415 -370 5 668 364 342 107 27 chr12 10885791 10885941 -110371589 + MER58A DNA MER1_type 10 171 -53 5 668 940 282 65 21 chr12 10886007 10886286 -110371244 - B4 SINE B4 0 292 2 5 668 599 278 55 7 chr12 10886315 10886521 -110371009 - MLT1E2 LTR MaLR -221 284 70 5 668 260 349 71 0 chr12 10887136 10887262 -110370268 - MIRb SINE MIR -76 192 58 5 668 207 0 0 0 chr12 10887554 10887577 -110369953 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 668 327 309 107 6 chr12 10887681 10887850 -110369680 + MER5A DNA MER1_type 4 189 0 5 668 836 288 69 108 chr12 10888829 10889382 -110368148 + MT2A LTR ERVL 1 531 -2 5 668 546 263 18 66 chr12 10889871 10890038 -110367492 - B4 SINE B4 0 292 134 5 668 1246 286 22 41 chr12 10890141 10890506 -110367024 + MTEa LTR MaLR 1 358 -21 5 668 486 0 0 0 chr12 10891374 10891428 -110366102 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 668 264 154 0 0 chr12 10891430 10891482 -110366048 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 668 254 268 27 27 chr12 10892051 10892124 -110365406 + Tigger5 DNA MER2_type 1 73 -2333 5 668 36626 35 5 7 chr12 10892125 10897307 -110360223 + L1Md_T LINE L1 422 5586 -297 5 668 8705 33 16 2 chr12 10897307 10898289 -110359241 + L1Md_T LINE L1 5587 6582 0 5 668 216 97 0 0 chr12 10898314 10898345 -110359185 + (A)n Simple_repeat Simple_repeat 1 31 0 5 668 552 275 134 5 chr12 10898346 10898555 -110358975 + Tigger5 DNA MER2_type 2137 2279 -127 5 668 347 278 79 77 chr12 10898581 10898854 -110358676 + L1MB3 LINE L1 5698 6034 -149 5 668 285 355 0 0 chr12 10898854 10898930 -110358600 + ID4 SINE ID 2 77 -6 5 668 338 270 96 107 chr12 10898930 10898994 -110358536 + L1MB3 LINE L1 6035 6083 -100 5 668 464 329 26 13 chr12 10899018 10899172 -110358358 + RSINE1 SINE B4 4 159 -6 5 668 791 320 53 28 chr12 10899297 10899580 -110357950 - B4A SINE B4 -2 290 1 5 668 427 320 95 95 chr12 10900349 10900708 -110356822 - ORR1E LTR MaLR 0 359 1 5 668 299 313 50 91 chr12 10900887 10901119 -110356411 + RSINE1 SINE B4 74 290 -2 5 668 804 273 107 0 chr12 10901218 10901405 -110356125 - ID_B1 SINE B4 -14 210 4 5 668 250 180 78 20 chr12 10901759 10901810 -110355720 - ID_B1 SINE B4 -46 178 125 5 668 1719 235 54 50 chr12 10901814 10901923 -110355607 - Lx7 LINE L1 0 7696 7586 5 668 237 33 0 0 chr12 10901923 10901953 -110355577 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 668 1719 235 54 50 chr12 10901953 10902403 -110355127 - Lx7 LINE L1 -111 7585 7135 5 668 232 297 36 90 chr12 10902403 10902514 -110355016 - B1F2 SINE Alu -37 112 8 5 668 2356 158 90 3 chr12 10903465 10903852 -110353678 + MTC LTR MaLR 1 421 0 5 668 189 289 163 10 chr12 10904602 10904700 -110352830 - L3 LINE CR1 -8 4481 4369 5 668 275 302 0 14 chr12 10909059 10909167 -110348363 + MIR SINE MIR 119 230 -38 5 668 367 270 11 0 chr12 10910251 10910340 -110347190 - MLT1B LTR MaLR -2 388 299 5 668 1181 79 0 0 chr12 10910340 10910479 -110347051 + B1_Mus2 SINE Alu 2 140 -7 5 668 735 12 0 0 chr12 10910482 10910566 -110346964 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 5 668 185 65 32 0 chr12 10910669 10910700 -110346830 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 668 193 340 137 36 chr12 10910827 10910995 -110346535 - L2 LINE L2 -432 2987 2803 5 668 614 260 92 23 chr12 10911206 10911379 -110346151 + B3 SINE B2 2 186 -30 5 668 244 264 51 77 chr12 10911386 10911464 -110346066 - ORR1E-int LTR MaLR -1499 81 6 5 668 741 301 142 6 chr12 10911475 10911786 -110345744 - ORR1E LTR MaLR -4 355 3 5 668 582 237 0 0 chr12 10911791 10911909 -110345621 + Lx LINE L1 6433 6550 -104 5 668 1415 52 0 0 chr12 10911904 10912076 -110345454 - L1_Mus3 LINE L1 -617 6021 5850 5 668 948 65 0 0 chr12 10912096 10912220 -110345310 + (TCTCCC)n Simple_repeat Simple_repeat 4 127 0 5 668 31284 110 12 8 chr12 10913357 10918903 -110338627 - L1_Mus3 LINE L1 -1 6637 1070 5 668 38643 15 0 7 chr12 10918905 10924095 -110333435 + L1Md_T LINE L1 440 5586 -297 5 668 9487 8 0 3 chr12 10924095 10925094 -110332436 + L1Md_T LINE L1 5587 6582 0 5 668 16486 12 0 0 chr12 10925095 10926936 -110330594 + L1Md_T LINE L1 3746 5586 -297 5 668 9487 8 0 3 chr12 10926936 10927935 -110329595 + L1Md_T LINE L1 5587 6582 0 5 668 16474 17 2 1 chr12 10927936 10929777 -110327753 + L1Md_A LINE L1 3746 5586 -297 5 668 9487 8 0 3 chr12 10929777 10930776 -110326754 + L1Md_T LINE L1 5587 6582 0 5 668 16474 17 2 1 chr12 10930776 10930802 -110326728 + L1Md_A LINE L1 5587 5614 -269 5 668 16520 11 0 0 chr12 10930779 10932620 -110324910 + L1Md_A LINE L1 3746 5586 -297 5 668 9313 17 0 2 chr12 10932620 10933618 -110323912 + L1Md_A LINE L1 5587 6582 0 5 668 4721 127 1 0 chr12 10933618 10934297 -110323233 - L1_Mus3 LINE L1 -5560 1078 399 5 668 621 309 16 10 chr12 10934321 10934514 -110323016 - B3 SINE B2 -3 213 20 5 668 229 352 32 24 chr12 10935681 10935806 -110321724 + MLT1E2 LTR MaLR 131 256 -371 5 668 240 35 0 0 chr12 10936203 10936232 -110321298 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 5 668 273 348 48 41 chr12 10936307 10936454 -110321076 + MIR3 SINE MIR 42 189 -19 5 668 468 0 0 0 chr12 10936753 10936805 -110320725 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 668 784 195 43 106 chr12 10936887 10937094 -110320436 + URR1B DNA MER1_type 17 210 -15 5 668 215 323 0 0 chr12 10937982 10938047 -110319483 - MIRc SINE MIR -139 129 65 5 668 280 295 38 76 chr12 10938164 10938296 -110319234 + MIRb SINE MIR 104 230 -38 6 668 3794 188 54 27 chr12 10939352 10940128 -110317402 - RMER13B LTR ERVK -111 797 1 6 668 3946 237 43 51 chr12 10940192 10941342 -110316188 + Lx9 LINE L1 6106 7245 -399 6 668 455 280 19 32 chr12 10941344 10941499 -110316031 - MT2A LTR ERVL -380 153 1 6 668 266 307 13 0 chr12 10941739 10941814 -110315716 - ID4_ SINE ID -5 78 3 6 668 253 230 47 47 chr12 10941983 10942047 -110315483 + RMER15 LTR ERVL 2 65 -510 6 668 1690 249 126 34 chr12 10942057 10942564 -110314966 + RMER15 LTR ERVL 22 575 0 6 668 901 288 5 0 chr12 10943152 10943364 -110314166 + ID_B1 SINE B4 12 224 0 6 668 468 172 6 25 chr12 10943669 10943830 -110313700 + (TCTA)n Simple_repeat Simple_repeat 2 159 0 6 668 3075 88 5 3 chr12 10944728 10945117 -110312413 + L1_Mus2 LINE L1 6177 6566 0 6 668 762 295 77 80 chr12 10945967 10946069 -110311461 + ORR1E LTR MaLR 31 126 -233 6 668 1211 129 150 0 chr12 10946069 10946262 -110311268 + URR1A DNA MER1_type 5 226 0 6 668 762 295 77 80 chr12 10946262 10946483 -110311047 + ORR1E LTR MaLR 127 353 -6 6 668 564 277 65 20 chr12 10948689 10948888 -110308642 + MER2 DNA MER2_type 91 298 -47 6 668 1000 265 123 37 chr12 10948910 10949125 -110308405 + MTD LTR MaLR 12 206 -215 6 668 2186 169 56 11 chr12 10949125 10949502 -110308028 + ORR1B1 LTR MaLR 1 394 0 6 668 1000 261 127 19 chr12 10949502 10949670 -110307860 + MTD LTR MaLR 207 405 -14 6 668 580 312 98 10 chr12 10950182 10950386 -110307144 - MLT1A LTR MaLR -3 371 150 6 668 970 303 30 61 chr12 10950391 10950753 -110306777 + ORR1E LTR MaLR 3 353 -6 6 668 309 290 90 15 chr12 10950752 10950885 -110306645 - MLT1A LTR MaLR -222 143 1 6 668 522 129 0 0 chr12 10951760 10951845 -110305685 + (GGGA)n Simple_repeat Simple_repeat 1 85 0 6 668 1362 222 34 111 chr12 10952057 10952473 -110305057 + ORR1C2 LTR MaLR 1 384 0 6 668 1790 60 153 0 chr12 10952539 10952774 -110304756 + L1_Mus1 LINE L1 6297 6567 0 6 668 987 131 37 12 chr12 10952986 10953148 -110304382 + RMER20B LTR ERVK 1 166 -461 6 668 3262 75 15 2 chr12 10953561 10953963 -110303567 + MTB_Mm LTR MaLR 1 407 0 6 668 2886 62 11 6 chr12 10954219 10954575 -110302955 + L1_Mus1 LINE L1 6210 6567 0 6 668 735 133 0 32 chr12 10956698 10956884 -110300646 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 668 378 0 0 0 chr12 10958021 10958063 -110299467 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 668 485 16 16 0 chr12 10958233 10958295 -110299235 + (TTG)n Simple_repeat Simple_repeat 2 64 0 6 668 219 273 0 0 chr12 10958660 10958715 -110298815 + T-rich Low_complexity Low_complexity 1 55 0 6 668 423 232 20 29 chr12 10958746 10958848 -110298682 + ORR1E LTR MaLR 8 108 -251 6 668 750 78 0 10 chr12 10958831 10958935 -110298595 + B1_Mus1 SINE Alu 36 138 -10 6 668 243 0 0 0 chr12 10958935 10958962 -110298568 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 668 870 288 39 16 chr12 10958963 10959217 -110298313 + ORR1E LTR MaLR 98 357 -2 6 668 347 294 16 16 chr12 10961413 10961541 -110295989 + (CATA)n Simple_repeat Simple_repeat 1 128 0 6 668 253 208 0 0 chr12 10961664 10961717 -110295813 + L1M5 LINE L1 2578 2630 -3516 6 668 555 132 0 0 chr12 10961950 10962041 -110295489 + (GGGA)n Simple_repeat Simple_repeat 4 94 0 6 668 622 291 115 39 chr12 10962052 10962630 -110294900 + L1M5 LINE L1 2816 3427 -2719 6 668 2209 178 85 8 chr12 10962630 10963020 -110294510 - MTC LTR MaLR -1 420 1 6 668 622 309 91 49 chr12 10963020 10963261 -110294269 + L1M5 LINE L1 3428 3666 -2480 6 668 7858 74 4 1 chr12 10963259 10964462 -110293068 + L1_Mus1 LINE L1 5357 6566 -1 6 668 647 63 0 0 chr12 10964597 10964676 -110292854 - L1Md_F2 LINE L1 -330 6252 6174 6 668 2267 80 18 79 chr12 10964676 10965017 -110292513 + L1_Mus1 LINE L1 6248 6567 0 6 668 24 0 0 0 chr12 10965017 10965041 -110292489 + AT_rich Low_complexity Low_complexity 1 24 0 6 668 1139 60 0 0 chr12 10965370 10965503 -110292027 + B1_Mm SINE Alu 1 133 -14 6 668 347 0 0 23 chr12 10965504 10965548 -110291982 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 668 860 258 189 2 chr12 10965908 10966304 -110291226 + L1MA5 LINE L1 5830 6299 -1 6 668 646 221 16 8 chr12 10966922 10967045 -110290485 + B3A SINE B2 2 125 -73 6 668 1727 67 24 1 chr12 10967050 10967379 -110290151 + L1VL2 LINE L1 796 1131 -2484 6 668 225 0 0 0 chr12 10967379 10967404 -110290126 + (CAAAAA)n Simple_repeat Simple_repeat 1 25 0 6 668 185 268 0 11 chr12 10968182 10968237 -110289293 + GA-rich Low_complexity Low_complexity 3 57 0 6 668 1191 72 0 0 chr12 10968237 10968417 -110289113 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 668 185 268 0 11 chr12 10968417 10968434 -110289096 + polypurine Low_complexity Low_complexity 58 74 0 6 668 987 107 0 0 chr12 10968434 10968612 -110288918 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 668 185 268 0 11 chr12 10968612 10968625 -110288905 + polypurine Low_complexity Low_complexity 75 87 0 6 668 1017 109 0 3 chr12 10968626 10968984 -110288546 + (GGA)n Simple_repeat Simple_repeat 1 356 0 6 668 250 127 18 18 chr12 10968984 10969031 -110288499 + (CAG)n Simple_repeat Simple_repeat 3 50 0 6 668 1149 98 0 1 chr12 10969031 10969211 -110288319 + (GGA)n Simple_repeat Simple_repeat 1 181 -605 6 668 250 127 18 18 chr12 10969211 10969219 -110288311 + (CAG)n Simple_repeat Simple_repeat 3 10 0 6 668 1149 98 0 1 chr12 10969219 10969819 -110287711 + (GGA)n Simple_repeat Simple_repeat 182 786 0 6 668 453 116 0 0 chr12 10969819 10969887 -110287643 + (ATG)n Simple_repeat Simple_repeat 2 70 0 6 668 392 377 94 0 chr12 10970056 10970194 -110287336 + RSINE1 SINE B4 3 153 -12 6 668 636 120 0 0 chr12 10970198 10970298 -110287232 + (TCCC)n Simple_repeat Simple_repeat 2 101 0 6 668 264 306 64 18 chr12 10971450 10971560 -110285970 + PB1D10 SINE Alu 2 116 -1 6 668 243 0 0 0 chr12 10971632 10971659 -110285871 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 668 537 90 0 0 chr12 10971659 10971748 -110285782 + (GA)n Simple_repeat Simple_repeat 2 90 0 6 668 703 290 0 12 chr12 10971752 10971916 -110285614 - B3A SINE B2 -36 162 1 6 668 24 32 0 0 chr12 10972008 10972039 -110285491 + AT_rich Low_complexity Low_complexity 1 31 0 6 668 194 321 72 24 chr12 10972446 10972529 -110285001 - L2c LINE L2 0 3387 3301 6 668 758 278 91 44 chr12 10972925 10973177 -110284353 - B4A SINE B4 -13 279 16 6 668 658 263 87 24 chr12 10973172 10973425 -110284105 + MLT1B LTR MaLR 122 390 0 6 668 635 292 239 11 chr12 10974130 10974432 -110283098 - MTE2b LTR MaLR -9 410 1 6 668 24 67 0 0 chr12 10974474 10974519 -110283011 + AT_rich Low_complexity Low_complexity 1 45 0 6 668 182 283 36 36 chr12 10975672 10975727 -110281803 + L3 LINE CR1 3368 3422 -1067 6 668 2211 165 84 10 chr12 10975772 10976164 -110281366 - MTC LTR MaLR 0 421 1 6 668 1749 111 50 4 chr12 10976793 10977055 -110280475 - Lx LINE L1 -545 6109 5836 6 668 3084 148 64 25 chr12 10977055 10977583 -110279947 + Lx LINE L1 6105 6653 -1 6 668 2269 138 78 3 chr12 10977587 10977958 -110279572 + L1Md_A LINE L1 570 968 -5648 6 668 38869 16 2 7 chr12 10977961 10983577 -110273953 + L1Md_A LINE L1 1 5586 -297 6 668 9498 9 0 0 chr12 10983577 10984573 -110272957 + L1Md_A LINE L1 5587 6582 0 6 668 33935 72 1 3 chr12 10984582 10989203 -110268327 + L1Md_A LINE L1 976 5587 -296 6 668 7587 63 33 18 chr12 10989203 10990102 -110267428 + L1Md_F2 LINE L1 5588 6481 -101 6 668 204 40 0 0 chr12 10990102 10990127 -110267403 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 6 668 7587 63 33 18 chr12 10990127 10990208 -110267322 + L1Md_F2 LINE L1 6482 6581 -1 6 668 1242 61 7 0 chr12 10990216 10990363 -110267167 + B1_Mus1 SINE Alu 1 148 0 6 668 402 209 0 0 chr12 10992186 10992320 -110265210 + GA-rich Low_complexity Low_complexity 2 135 0 6 668 1196 203 33 31 chr12 10994186 10994456 -110263074 + RLTR20B2 LTR ERVK 282 560 0 6 668 294 205 120 43 chr12 10994975 10995067 -110262463 + RMER3D-int LTR ERVK 1013 1111 -1731 6 668 23 0 0 0 chr12 10995104 10995127 -110262403 + AT_rich Low_complexity Low_complexity 1 23 0 6 668 975 71 135 0 chr12 10995132 10995258 -110262272 - B1_Mus1 SINE Alu -5 143 1 6 668 30181 48 0 4 chr12 10995438 11000000 -110257530 + L1Md_Gf LINE L1 262 4903 -983 6 668 6123 16 0 0 chr12 11000000 11000686 -110256844 + L1Md_T LINE L1 4901 5586 -297 1 668 8949 36 0 0 chr12 11000686 11001682 -110255848 + L1Md_T LINE L1 5587 6582 0 1 668 255 93 0 0 chr12 11001712 11001755 -110255775 + (A)n Simple_repeat Simple_repeat 1 43 0 2 668 1844 161 31 9 chr12 11002017 11002336 -110255194 + MYSERV16_I-int LTR ERVK 1 326 -2000 3 668 194 113 0 131 chr12 11002475 11002536 -110254994 - MER5A DNA MER1_type -113 76 24 4 668 1242 207 51 51 chr12 11002540 11002765 -110254765 + MYSERV16_I-int LTR ERVK 566 799 -1527 3 668 1338 42 0 0 chr12 11002765 11002930 -110254600 + (TG)n Simple_repeat Simple_repeat 2 166 0 5 668 1242 207 51 51 chr12 11002930 11002999 -110254531 + MYSERV16_I-int LTR ERVK 800 859 -1467 3 668 8008 77 6 1 chr12 11003060 11004555 -110252975 - L1_Mus1 LINE L1 0 6567 5066 6 668 2964 79 45 10 chr12 11004556 11004953 -110252577 - RLTR10A LTR ERVK 0 411 1 7 668 5102 131 80 43 chr12 11004953 11006089 -110251441 - RLTR10-int LTR ERVK -1 1986 1288 7 668 2089 85 22 0 chr12 11006083 11006354 -110251176 - IAP-d-int LTR ERVK -1260 5282 5006 8 668 760 188 7 0 chr12 11006360 11006509 -110251021 - IAP-d-int LTR ERVK -6046 496 347 8 668 2023 82 38 29 chr12 11006503 11006847 -110250683 - IAP-d-int LTR ERVK -1381 606 95 8 668 2969 81 45 10 chr12 11006847 11007244 -110250286 - RLTR10A LTR ERVK 0 411 1 8 668 834 93 0 0 chr12 11007244 11007362 -110250168 - L1_Mm LINE L1 -813 5070 4953 9 668 6729 144 45 13 chr12 11007362 11007583 -110249947 + MYSERV16_I-int LTR ERVK 1080 1302 -1024 3 668 2614 135 36 24 chr12 11007583 11008000 -110249530 + Lx LINE L1 6231 6652 -2 1 668 6729 144 45 13 chr12 11008000 11008986 -110248544 + MYSERV16_I-int LTR ERVK 1303 2326 0 3 668 2717 209 5 28 chr12 11008986 11009556 -110247974 + RLTR20B2 LTR ERVK 4 560 0 3 668 309 190 0 0 chr12 11009556 11009614 -110247916 + MTC LTR MaLR 356 413 -8 1 668 381 186 23 23 chr12 11009692 11009780 -110247750 - RMER5 LTR ERV1 -2 532 445 1 668 965 102 0 0 chr12 11009781 11009918 -110247612 + L1_Mm LINE L1 5156 5292 -591 1 83 1958 77 7 11 chr12 11009919 11010194 -110247336 + L1_Mus2 LINE L1 5189 5462 -421 1 669 3325 29 3 0 chr12 11010192 11010578 -110246952 + L1Md_T LINE L1 5200 5586 -297 1 669 8842 41 1 0 chr12 11010578 11011572 -110245958 + L1Md_T LINE L1 5587 6581 -1 1 669 7496 73 19 0 chr12 11011572 11012666 -110244864 + L1_Mus2 LINE L1 5452 6566 0 1 669 429 332 98 66 chr12 11012678 11012859 -110244671 - RMER5 LTR ERV1 -76 458 284 1 669 249 108 0 0 chr12 11012859 11012896 -110244634 + (CGA)n Simple_repeat Simple_repeat 3 39 0 1 669 429 332 98 66 chr12 11012896 11013121 -110244409 - RMER5 LTR ERV1 -251 283 39 1 669 307 323 37 12 chr12 11013235 11013379 -110244151 + MIRc SINE MIR 81 223 -45 1 669 285 307 215 9 chr12 11013460 11013693 -110243837 + MamRep434 DNA TcMar 72 352 -74 1 669 1203 95 0 6 chr12 11013884 11014043 -110243487 - L1_Mur2 LINE L1 -210 5667 5510 1 669 948 176 62 100 chr12 11014039 11014330 -110243200 + Lx5 LINE L1 5883 6162 -888 2 669 332 222 43 32 chr12 11014330 11014423 -110243107 + MTE2a LTR MaLR 286 379 0 2 669 401 179 12 0 chr12 11014473 11014557 -110242973 + CT-rich Low_complexity Low_complexity 2 86 0 2 669 5422 135 29 10 chr12 11014775 11015294 -110242236 + Lx4A LINE L1 6223 6755 -303 2 669 228 35 0 0 chr12 11015294 11015323 -110242207 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 669 5422 135 29 10 chr12 11015323 11015619 -110241911 + Lx4A LINE L1 6756 7054 -4 2 669 310 288 20 46 chr12 11016053 11016206 -110241324 - L1MEc LINE L1 -6215 185 37 2 669 374 299 77 53 chr12 11016209 11016388 -110241142 - L1MEc LINE L1 -4242 2173 1991 2 669 509 80 0 13 chr12 11016388 11016464 -110241066 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 669 374 312 142 24 chr12 11016464 11016596 -110240934 - L1MEc LINE L1 -4410 1990 1836 2 669 825 219 69 10 chr12 11016602 11016805 -110240725 - B3 SINE B2 0 216 2 2 669 239 316 54 25 chr12 11017048 11017288 -110240242 - L1MEc LINE L1 -4834 1581 1335 2 669 26 0 0 0 chr12 11017328 11017354 -110240176 + AT_rich Low_complexity Low_complexity 1 26 0 2 669 256 222 0 0 chr12 11017354 11017408 -110240122 - Lx8 LINE L1 -5 7468 7415 3 669 1141 73 7 0 chr12 11018503 11018640 -110238890 - B1_Mus2 SINE Alu -9 138 1 3 669 1002 317 45 3 chr12 11018834 11019144 -110238386 - Lx8 LINE L1 -141 7332 7010 3 669 182 386 61 0 chr12 11019840 11019954 -110237576 - MIRb SINE MIR -15 253 133 3 669 636 323 15 30 chr12 11020324 11020525 -110237005 + B3 SINE B2 19 216 0 3 669 11688 111 37 2 chr12 11020552 11022855 -110234675 + L1Md_F LINE L1 470 2855 -3028 3 669 2048 108 19 9 chr12 11022855 11023159 -110234371 + L1Md_F LINE L1 3699 4008 -1875 3 669 6529 60 1 1 chr12 11023159 11023926 -110233604 + L1_Mus1 LINE L1 5801 6567 0 3 669 2048 108 19 9 chr12 11023926 11023940 -110233590 + L1Md_F LINE L1 4009 4020 -1863 3 669 464 225 11 0 chr12 11024002 11024091 -110233439 + RSINE1 SINE B4 12 101 -64 3 669 378 107 0 0 chr12 11024118 11024174 -110233356 + (ATG)n Simple_repeat Simple_repeat 3 58 0 3 669 864 241 73 0 chr12 11024280 11024471 -110233059 - B3 SINE B2 -11 205 1 3 669 252 0 0 0 chr12 11024740 11024768 -110232762 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 669 3535 123 63 9 chr12 11024800 11025339 -110232191 - Lx3C LINE L1 -2 6974 6407 4 669 468 0 0 0 chr12 11025355 11025407 -110232123 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 669 781 64 9 0 chr12 11025408 11025518 -110232012 - RLTR13C2 LTR ERVK -119 689 579 4 669 1816 195 83 0 chr12 11025682 11026020 -110231510 + ORR1B2 LTR MaLR 1 366 -1 4 669 551 313 96 6 chr12 11026076 11026243 -110231287 + B3A SINE B2 1 182 -16 4 669 1121 297 89 49 chr12 11026597 11027224 -110230306 + L1MB7 LINE L1 5360 6011 -173 4 669 1459 162 60 8 chr12 11027332 11027581 -110229949 - Lx4A LINE L1 0 7058 6797 4 669 270 0 0 0 chr12 11027614 11027644 -110229886 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 669 420 325 55 25 chr12 11027682 11027919 -110229611 - L1ME3A LINE L1 -298 5875 5632 4 669 739 302 83 23 chr12 11029237 11029501 -110228029 - B4 SINE B4 -11 281 2 4 669 333 362 84 22 chr12 11029506 11029684 -110227846 + MER5A DNA MER1_type 1 189 0 5 669 183 114 0 0 chr12 11030189 11030224 -110227306 + (A)n Simple_repeat Simple_repeat 1 35 0 5 669 201 259 21 0 chr12 11030701 11030758 -110226772 + L2b LINE L2 3330 3426 0 5 669 690 291 43 5 chr12 11030957 11031164 -110226366 + B3 SINE B2 2 216 0 5 669 1831 232 28 8 chr12 11031944 11032344 -110225186 - MTD LTR MaLR 0 419 12 5 669 896 243 43 10 chr12 11032384 11032592 -110224938 + B3 SINE B2 2 216 0 5 669 467 96 0 12 chr12 11033123 11033207 -110224323 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 669 216 0 0 0 chr12 11033207 11033231 -110224299 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 669 397 211 0 73 chr12 11033277 11033359 -110224171 - B4A SINE B4 -216 76 1 5 669 272 230 44 33 chr12 11033417 11033507 -110224023 + L1ME2 LINE L1 6067 6157 -7 5 669 3322 54 26 0 chr12 11033513 11033900 -110223630 - L1_Mus1 LINE L1 -1 6566 6170 6 669 1267 85 0 0 chr12 11033900 11034065 -110223465 + L1_Mus1 LINE L1 6004 6168 -399 6 669 726 67 0 0 chr12 11034807 11034912 -110222618 + (TC)n Simple_repeat Simple_repeat 2 106 0 6 669 324 0 0 0 chr12 11035245 11035281 -110222249 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 669 414 0 0 0 chr12 11035281 11035326 -110222204 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 669 260 326 0 23 chr12 11035437 11035525 -110222005 + B3A SINE B2 11 96 -102 6 669 461 318 23 0 chr12 11036658 11036831 -110220699 + L1M5 LINE L1 4427 4603 -1543 6 669 685 271 0 0 chr12 11036841 11036981 -110220549 + ID_B1 SINE B4 81 220 -4 6 669 253 125 60 40 chr12 11036937 11036987 -110220543 + PB1D10 SINE Alu 67 117 0 6 669 361 337 18 12 chr12 11037065 11037233 -110220297 + L1M5 LINE L1 4675 4843 -1303 6 669 192 333 0 0 chr12 11037239 11037293 -110220237 - L2c LINE L2 -58 3329 3276 6 669 5563 160 25 31 chr12 11038234 11039346 -110218184 + L1Md_T LINE L1 100 1205 -5411 6 669 37225 32 0 0 chr12 11039352 11043769 -110213761 + L1Md_T LINE L1 1170 5586 -297 6 669 8555 55 0 0 chr12 11043769 11044765 -110212765 + L1Md_T LINE L1 5587 6582 0 6 669 211 93 47 0 chr12 11045484 11045527 -110212003 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 669 436 195 121 0 chr12 11045528 11045621 -110211909 - B1_Mur2 SINE Alu -11 109 7 7 669 592 296 67 86 chr12 11046030 11046344 -110211186 - MLT1A0 LTR MaLR 0 365 58 7 669 396 259 0 0 chr12 11046472 11046557 -110210973 - B1F SINE Alu -64 85 1 7 669 723 105 0 0 chr12 11046610 11046734 -110210796 + (TC)n Simple_repeat Simple_repeat 2 125 0 7 669 704 312 71 46 chr12 11046741 11047023 -110210507 - MT2A LTR ERVL -65 468 180 7 669 226 284 86 128 chr12 11047109 11047226 -110210304 - PB1D10 SINE Alu 0 117 6 7 669 321 366 77 63 chr12 11047379 11047665 -110209865 + MLT1I LTR MaLR 116 405 -6 7 669 399 313 44 44 chr12 11048089 11048219 -110209311 - ORR1E LTR MaLR 0 379 250 7 669 373 268 28 99 chr12 11048219 11048360 -110209170 - RLTR23 LTR ERV1 0 430 300 7 669 835 312 55 16 chr12 11048375 11048756 -110208774 + RLTR22_Mur LTR ERVK 410 805 -1043 8 669 264 310 65 57 chr12 11048809 11048932 -110208598 + RLTR22_Mus LTR ERVK 1543 1666 -142 8 669 4773 138 31 72 chr12 11049029 11049864 -110207666 - Lx2 LINE L1 0 6997 6197 8 669 840 228 103 5 chr12 11049865 11050059 -110207471 - ORR1E LTR MaLR -145 214 2 7 669 233 268 181 12 chr12 11050247 11050330 -110207200 + B4 SINE B4 1 97 -195 8 669 281 98 98 0 chr12 11050352 11050403 -110207127 + Lx9 LINE L1 7582 7637 -7 8 669 4158 113 7 2 chr12 11050407 11050974 -110206556 - Lx LINE L1 -7 6647 6078 8 669 517 291 46 83 chr12 11050974 11051191 -110206339 + B4A SINE B4 84 292 0 8 669 198 208 0 0 chr12 11051221 11051269 -110206261 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 669 295 350 0 48 chr12 11051928 11052054 -110205476 + MIRb SINE MIR 11 130 -138 8 669 425 374 16 0 chr12 11053004 11053186 -110204344 - Charlie10a DNA MER1_type -37 243 59 8 669 1052 246 40 140 chr12 11053531 11053952 -110203578 - MTE2a LTR MaLR 0 379 1 8 669 560 365 86 24 chr12 11053961 11054332 -110203198 - MLT1J2 LTR MaLR -19 429 36 9 669 1484 138 0 0 chr12 11055264 11055482 -110202048 + L1VL1 LINE L1 4 221 -6201 9 669 7863 83 1 0 chr12 11055497 11056543 -110200987 - L1_Mm LINE L1 -2828 3055 2009 9 669 14085 75 18 0 chr12 11056541 11058398 -110199132 + L1Md_F2 LINE L1 3697 5586 -297 9 669 7656 68 10 7 chr12 11058399 11059391 -110198139 + L1Md_F2 LINE L1 5588 6582 0 9 669 2868 93 12 5 chr12 11059546 11059946 -110197584 + RLTR9D LTR ERVK 1 403 0 9 669 1969 160 104 0 chr12 11060463 11060690 -110196840 - MTC LTR MaLR -8 413 156 9 669 4238 85 35 8 chr12 11060690 11061297 -110196233 - L1_Mus4 LINE L1 -5 6631 6009 9 669 1969 160 104 0 chr12 11061297 11061443 -110196087 - MTC LTR MaLR -266 155 2 9 669 267 221 124 9 chr12 11061596 11061701 -110195829 - MIR SINE MIR -64 198 82 9 669 223 246 16 0 chr12 11062370 11062431 -110195099 + GA-rich Low_complexity Low_complexity 3 64 0 9 669 243 0 0 0 chr12 11062872 11062899 -110194631 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 9 669 363 326 34 14 chr12 11063547 11063561 -110193969 - B1F SINE Alu 0 149 136 1 669 321 250 0 0 chr12 11063561 11063625 -110193905 - ID4_ SINE ID -16 67 4 1 669 363 326 34 14 chr12 11063625 11063756 -110193774 - B1F SINE Alu -14 135 1 1 669 1139 117 0 6 chr12 11063779 11063960 -110193570 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 1 669 5167 213 35 6 chr12 11064309 11065334 -110192196 + Lx7 LINE L1 6115 7169 -527 1 669 3815 178 81 48 chr12 11065334 11066235 -110191295 + RMER17B LTR ERVK 1 931 -27 1 669 772 147 43 145 chr12 11066235 11066442 -110191088 + Lx7 LINE L1 7182 7367 -329 1 669 225 211 0 0 chr12 11066447 11066499 -110191031 + T-rich Low_complexity Low_complexity 1 52 0 1 669 1168 169 124 36 chr12 11066506 11066680 -110190850 + Lx7 LINE L1 7364 7551 -145 1 669 300 53 0 0 chr12 11066680 11066718 -110190812 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 669 1168 169 124 36 chr12 11066718 11066849 -110190681 + Lx7 LINE L1 7552 7696 0 1 669 231 36 0 0 chr12 11067060 11067088 -110190442 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 669 1116 230 202 8 chr12 11067242 11067593 -110189937 - MTD LTR MaLR 0 419 1 1 669 759 323 72 8 chr12 11067870 11068135 -110189395 + B4 SINE B4 1 282 -10 1 669 1558 157 47 146 chr12 11068713 11069139 -110188391 + ORR1C2 LTR MaLR 1 384 0 1 669 259 296 66 24 chr12 11070120 11070286 -110187244 - HAL1 LINE L1 -307 2200 2028 1 669 248 215 29 106 chr12 11070543 11070647 -110186883 + ORR1E LTR MaLR 98 193 -166 1 669 273 270 42 73 chr12 11071156 11071252 -110186278 + B4 SINE B4 2 94 -198 1 669 229 167 56 0 chr12 11071898 11071952 -110185578 + GA-rich Low_complexity Low_complexity 2 58 0 1 669 779 292 22 5 chr12 11072313 11072593 -110184937 - L1MA4 LINE L1 -377 5923 5609 1 669 1194 162 5 5 chr12 11072593 11072803 -110184727 + MTC LTR MaLR 1 210 -211 1 669 1018 53 67 0 chr12 11072803 11072953 -110184577 + B2_Mm2 SINE B2 2 161 -34 1 669 216 0 0 0 chr12 11072954 11072978 -110184552 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 669 1065 93 0 0 chr12 11073016 11073167 -110184363 + (GAAA)n Simple_repeat Simple_repeat 3 153 0 1 669 240 111 0 0 chr12 11073167 11073203 -110184327 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 1 669 552 68 0 0 chr12 11073203 11073276 -110184254 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 1 669 1185 189 0 0 chr12 11073283 11073495 -110184035 + MTC LTR MaLR 210 421 0 1 669 441 197 115 7 chr12 11073496 11073639 -110183891 - L1MA4 LINE L1 -671 5641 5475 1 669 240 321 131 35 chr12 11074231 11074376 -110183154 - MIRb SINE MIR -13 255 97 1 669 216 339 80 35 chr12 11074695 11074808 -110182722 + MIRb SINE MIR 13 130 -138 1 669 2509 116 30 0 chr12 11074991 11075363 -110182167 + L1_Mm LINE L1 4344 4726 -1157 1 669 4594 50 16 0 chr12 11075363 11075923 -110181607 + L1_Mus1 LINE L1 5999 6567 0 1 669 414 253 77 24 chr12 11076675 11076845 -110180685 - L1MC4a LINE L1 0 7882 7704 1 669 747 333 3 42 chr12 11076959 11077247 -110180283 + B4A SINE B4 8 284 -8 1 669 404 37 19 0 chr12 11077340 11077394 -110180136 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 669 2876 48 3 0 chr12 11077544 11077895 -110179635 - L1_Mus1 LINE L1 0 6567 6216 1 669 322 243 58 0 chr12 11077905 11078008 -110179522 - L1MC LINE L1 -2421 5461 5353 1 669 686 296 89 19 chr12 11078640 11078909 -110178621 - ORR1E LTR MaLR -71 288 1 1 669 565 273 0 8 chr12 11079411 11079540 -110177990 + ID_B1 SINE B4 91 218 -6 1 669 14508 14 0 1 chr12 11079864 11081503 -110176027 + L1Md_A LINE L1 3950 5586 -297 1 669 8810 25 0 0 chr12 11081503 11082499 -110175031 + L1Md_A LINE L1 5587 6582 0 1 669 21 0 0 0 chr12 11082508 11082529 -110175001 + AT_rich Low_complexity Low_complexity 1 21 0 1 669 471 308 49 39 chr12 11083849 11084052 -110173478 - MLT1A LTR MaLR -167 207 3 1 669 289 109 0 35 chr12 11084154 11084211 -110173319 + (TTGTG)n Simple_repeat Simple_repeat 5 59 0 1 669 259 278 51 0 chr12 11084230 11084338 -110173192 - B4 SINE B4 -18 274 78 1 669 312 179 75 0 chr12 11084352 11084419 -110173111 - B4A SINE B4 -220 72 1 1 669 231 211 181 14 chr12 11084899 11084971 -110172559 + MIR3 SINE MIR 120 203 -5 1 669 770 264 78 78 chr12 11085566 11085895 -110171635 + MTE2a LTR MaLR 1 313 -66 1 669 339 25 0 0 chr12 11085895 11085935 -110171595 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 669 770 264 78 78 chr12 11085935 11085966 -110171564 + MTE2a LTR MaLR 314 360 -19 1 669 715 302 83 0 chr12 11087306 11087558 -110169972 + B4 SINE B4 2 274 -18 1 669 1401 257 244 38 chr12 11087739 11088399 -110169131 - RMER13A LTR ERVK -64 796 1 1 669 564 207 36 29 chr12 11088399 11088538 -110168992 - L1M3 LINE L1 -1922 4218 4079 1 669 234 274 87 150 chr12 11088792 11089036 -110168494 - ORR1E LTR MaLR -32 327 94 1 669 1511 131 86 198 chr12 11089036 11089571 -110167959 - IAPLTR2_Mm LTR ERVK 0 475 1 1 669 234 274 87 150 chr12 11089571 11089592 -110167938 - ORR1E LTR MaLR -266 93 79 1 669 241 345 48 21 chr12 11089751 11089896 -110167634 - MIRb SINE MIR -91 177 29 1 669 1546 45 0 0 chr12 11090264 11090443 -110167087 + B2_Mm1a SINE B2 1 179 -14 1 669 247 403 14 0 chr12 11091828 11091967 -110165563 - MIRb SINE MIR -29 239 99 1 669 1912 265 49 19 chr12 11091971 11092488 -110165042 + Lx8 LINE L1 6587 7120 -353 1 669 308 24 0 24 chr12 11092488 11092530 -110165000 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 669 255 161 36 0 chr12 11092609 11092665 -110164865 + Lx8 LINE L1 7416 7473 0 1 669 239 286 122 0 chr12 11092879 11092977 -110164553 + MLT1D LTR MaLR 19 128 -499 1 669 367 299 157 13 chr12 11093011 11093244 -110164286 + MLT1D LTR MaLR 213 504 -1 1 669 378 0 0 0 chr12 11093413 11093455 -110164075 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 669 267 37 91 80 chr12 11093559 11093734 -110163796 + (ATATG)n Simple_repeat Simple_repeat 1 177 0 1 669 243 246 14 14 chr12 11094492 11094566 -110162964 - MADE2 DNA Mariner -1 79 6 1 669 188 143 48 0 chr12 11095063 11095105 -110162425 + L2c LINE L2 3122 3165 -222 1 669 186 71 0 0 chr12 11095261 11095289 -110162241 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 669 216 301 88 38 chr12 11095991 11096150 -110161380 + MIRb SINE MIR 36 202 -66 1 669 539 314 169 14 chr12 11097191 11097398 -110160132 - B4 SINE B4 -2 290 52 1 669 356 296 111 14 chr12 11100521 11100665 -110156865 - B3A SINE B2 -5 193 36 1 669 358 327 173 0 chr12 11100813 11100969 -110156561 + RMER30 DNA MER1_type 18 200 -2 1 669 617 297 33 36 chr12 11103195 11103471 -110154059 + B4A SINE B4 5 279 -13 1 669 213 224 0 0 chr12 11103501 11103559 -110153971 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 669 185 226 0 19 chr12 11103558 11103612 -110153918 + A-rich Low_complexity Low_complexity 2 54 0 1 669 441 66 0 0 chr12 11103638 11103699 -110153831 + (GTTTG)n Simple_repeat Simple_repeat 2 62 0 1 669 377 226 147 0 chr12 11103699 11103801 -110153729 - B1_Mur1 SINE Alu -10 139 23 1 669 4274 208 41 78 chr12 11103875 11104937 -110152593 + RMER1B Other Other 44 1066 0 1 669 363 304 43 19 chr12 11105152 11105313 -110152217 + MER2 DNA MER2_type 93 257 -88 1 669 544 292 151 49 chr12 11105670 11106141 -110151389 + L1MC5 LINE L1 5262 5780 -2102 1 669 299 107 40 13 chr12 11106151 11106227 -110151303 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 669 259 192 14 14 chr12 11106227 11106301 -110151229 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 669 252 137 0 0 chr12 11106300 11106351 -110151179 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 669 348 77 0 0 chr12 11107012 11107064 -110150466 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 669 419 269 8 8 chr12 11107169 11107289 -110150241 + RSINE1 SINE B4 11 130 -35 1 669 208 143 0 0 chr12 11107302 11107337 -110150193 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 669 25 0 0 0 chr12 11107488 11107513 -110150017 + AT_rich Low_complexity Low_complexity 1 25 0 1 669 5196 2 0 0 chr12 11107663 11108226 -110149304 + L1Md_A LINE L1 6019 6581 -1 1 669 398 221 0 0 chr12 11108268 11108354 -110149176 - B3 SINE B2 -1 215 130 1 669 4572 147 35 84 chr12 11108358 11108918 -110148612 - RMER19B LTR ERVK -5 897 362 1 669 1213 35 0 14 chr12 11108918 11109063 -110148467 - B1_Mus2 SINE Alu 0 147 5 1 669 4572 147 35 84 chr12 11109063 11109445 -110148085 - RMER19B LTR ERVK -541 361 1 1 669 358 167 56 0 chr12 11109472 11109544 -110147986 - B3 SINE B2 -139 77 2 1 669 186 160 0 0 chr12 11109774 11109824 -110147706 + A-rich Low_complexity Low_complexity 1 50 0 1 669 340 329 119 6 chr12 11110053 11110221 -110147309 + LTR16A LTR ERVL 255 441 -10 1 669 445 250 37 12 chr12 11110270 11110432 -110147098 + L1MC5 LINE L1 6709 6874 -1087 1 669 2871 24 0 43 chr12 11110465 11110817 -110146713 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 669 57388 18 16 1 chr12 11110817 11117192 -110140338 - IAPEz-int LTR ERVK 0 6481 8 1 669 2884 21 0 43 chr12 11117192 11117544 -110139986 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 669 660 281 20 20 chr12 11117706 11117902 -110139628 - B4A SINE B4 -75 217 22 1 669 438 240 114 23 chr12 11117950 11118125 -110139405 + L1MC5 LINE L1 6974 7164 -797 1 669 1190 233 105 23 chr12 11118185 11118615 -110138915 + L1M4 LINE L1 2301 2765 -3381 1 669 266 301 81 58 chr12 11118750 11118923 -110138607 - ORR1E LTR MaLR -162 197 21 1 669 390 230 23 45 chr12 11118953 11119085 -110138445 + L1M4 LINE L1 2778 2906 -3240 1 669 472 214 48 43 chr12 11119161 11119336 -110138194 + B3 SINE B2 18 186 -9 1 669 4964 172 44 19 chr12 11119423 11120331 -110137199 + Lx5 LINE L1 6117 7047 -3 1 669 1295 266 90 42 chr12 11120438 11121050 -110136480 + L1M4 LINE L1 3124 3770 -2376 1 669 2197 183 42 2 chr12 11121050 11121455 -110136075 - MTC LTR MaLR 0 421 1 1 669 1295 266 90 42 chr12 11121455 11121485 -110136045 + L1M4 LINE L1 3771 3797 -2349 1 669 384 59 0 0 chr12 11121520 11121571 -110135959 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 669 635 234 165 9 chr12 11121641 11121865 -110135665 + L1MB7 LINE L1 5922 6180 -4 1 669 835 252 65 40 chr12 11121979 11122586 -110134944 + Lx9 LINE L1 6941 7612 -32 1 669 375 261 195 51 chr12 11122790 11123318 -110134212 + L1MC5 LINE L1 7309 7912 -49 1 669 359 271 6 0 chr12 11123336 11123436 -110134094 + PB1D10 SINE Alu 1 103 -17 1 669 1297 307 5 8 chr12 11123623 11123997 -110133533 + MTEa LTR MaLR 1 373 -6 1 669 200 34 0 33 chr12 11124169 11124199 -110133331 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 669 26 30 0 0 chr12 11124689 11124722 -110132808 + AT_rich Low_complexity Low_complexity 1 33 0 1 669 1263 88 0 0 chr12 11125854 11126059 -110131471 + (GAAA)n Simple_repeat Simple_repeat 1 205 0 1 669 878 209 86 5 chr12 11126140 11126337 -110131193 - ID_B1 SINE B4 -11 213 1 1 669 280 152 30 0 chr12 11127408 11127474 -110130056 + CT-rich Low_complexity Low_complexity 5 72 0 2 669 1339 84 17 0 chr12 11128478 11128657 -110128873 - B2_Mm1a SINE B2 -10 183 2 2 669 858 291 46 15 chr12 11128711 11128973 -110128557 + B4 SINE B4 1 270 -22 2 669 399 41 0 0 chr12 11128976 11129025 -110128505 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 669 306 303 73 0 chr12 11129234 11129343 -110128187 - MIRb SINE MIR -108 160 44 2 669 2030 142 148 3 chr12 11130639 11131005 -110126525 - MTC LTR MaLR 0 421 3 2 669 1143 86 16 98 chr12 11131015 11131209 -110126321 - B2_Mm2 SINE B2 -16 179 2 2 669 363 218 26 0 chr12 11131549 11131627 -110125903 + RSINE1 SINE B4 68 147 -18 2 669 378 0 0 0 chr12 11131627 11131669 -110125861 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 669 1063 274 10 21 chr12 11131950 11132241 -110125289 + B4A SINE B4 1 288 -4 2 669 189 262 0 0 chr12 11132252 11132313 -110125217 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 2 669 428 266 26 0 chr12 11134074 11134187 -110123343 - B1F SINE Alu -6 143 28 2 669 184 184 0 0 chr12 11134229 11134267 -110123263 - MIR SINE MIR -120 142 105 2 669 980 62 0 0 chr12 11134316 11134446 -110123084 + B2_Mm1a SINE B2 37 166 -27 2 669 1102 70 6 6 chr12 11134449 11134607 -110122923 + (GAAAA)n Simple_repeat Simple_repeat 3 160 0 2 669 255 254 68 40 chr12 11134616 11134690 -110122840 - PB1D10 SINE Alu -41 76 1 2 669 545 237 43 7 chr12 11134690 11134764 -110122766 - ID SINE ID -141 83 5 2 669 509 282 42 50 chr12 11136196 11136435 -110121095 + Charlie4a DNA MER1_type 211 447 -61 2 669 569 236 127 98 chr12 11136446 11136690 -110120840 + Lx6 LINE L1 7181 7431 -29 2 669 405 0 0 0 chr12 11137110 11137155 -110120375 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 669 2126 82 23 90 chr12 11138014 11138360 -110119170 + ORR1A2 LTR MaLR 5 327 0 2 669 751 289 95 13 chr12 11138360 11138591 -110118939 - B4A SINE B4 -42 250 1 2 669 381 43 0 0 chr12 11139234 11139281 -110118249 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 669 1757 170 38 17 chr12 11139750 11140097 -110117433 + ORR1B1 LTR MaLR 41 394 0 2 669 183 277 93 35 chr12 11140399 11140485 -110117045 + L2c LINE L2 3243 3333 -54 2 669 578 299 162 75 chr12 11140643 11140896 -110116634 + B4 SINE B4 18 292 0 2 670 1116 7 21 0 chr12 11141570 11141711 -110115819 + (TAGA)n Simple_repeat Simple_repeat 3 146 0 2 670 1221 259 36 15 chr12 11141738 11142058 -110115472 - MTE2b LTR MaLR -4 375 49 2 670 513 196 0 52 chr12 11142058 11142155 -110115375 + URR1B DNA MER1_type 1 92 -133 2 670 750 173 66 10 chr12 11142155 11142343 -110115187 + B3 SINE B2 1 195 0 2 670 895 122 0 13 chr12 11142340 11142490 -110115040 + URR1B DNA MER1_type 78 225 0 2 670 727 218 137 18 chr12 11143862 11144030 -110113500 + B3 SINE B2 1 188 -28 2 670 387 262 306 36 chr12 11144302 11144495 -110113035 + B4A SINE B4 28 272 -20 2 670 308 64 21 0 chr12 11144495 11144542 -110112988 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 670 1058 212 92 0 chr12 11144582 11144822 -110112708 + RMER1B Other Other 798 1059 -7 2 670 737 108 107 8 chr12 11144922 11145053 -110112477 + Lx4A LINE L1 6912 7055 -3 2 670 479 245 22 120 chr12 11145085 11145452 -110112078 - MLT1A1 LTR MaLR -4 404 52 2 670 1145 262 73 39 chr12 11146637 11146767 -110110763 + ORR1D2 LTR MaLR 3 135 -235 2 670 216 0 0 0 chr12 11146767 11146791 -110110739 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 670 1145 262 73 39 chr12 11146791 11146990 -110110540 + ORR1D2 LTR MaLR 136 343 -27 2 670 201 94 0 0 chr12 11147726 11147758 -110109772 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 2 670 200 205 85 8 chr12 11147760 11147837 -110109693 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 2 670 522 126 0 0 chr12 11147837 11147940 -110109590 + (CATA)n Simple_repeat Simple_repeat 2 104 0 2 670 918 140 30 2 chr12 11147940 11148157 -110109373 + (TAGA)n Simple_repeat Simple_repeat 1 223 0 2 670 6700 62 3 14 chr12 11148574 11149431 -110108099 + L1Md_F2 LINE L1 5735 6582 0 2 670 600 225 23 0 chr12 11149816 11149945 -110107585 + B1_Mur2 SINE Alu 3 134 -15 2 670 266 154 58 0 chr12 11150106 11150158 -110107372 + ORR1B1 LTR MaLR 1 55 -274 2 670 4897 132 2 5 chr12 11150158 11150999 -110106531 + Lx LINE L1 5465 6303 -351 2 670 474 150 0 0 chr12 11150999 11151079 -110106451 + ORR1B1 LTR MaLR 274 353 -41 2 670 1335 145 39 9 chr12 11151079 11151323 -110106207 + Lx3B LINE L1 6756 6999 -1 2 670 384 21 0 0 chr12 11151323 11151371 -110106159 + ORR1A4 LTR MaLR 274 321 -8 2 670 483 274 111 0 chr12 11151442 11151595 -110105935 + MLT2B4 LTR ERVL 9 178 -378 2 670 438 53 0 0 chr12 11151595 11151652 -110105878 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 670 757 264 27 18 chr12 11152376 11152596 -110104934 + ID_B1 SINE B4 2 223 -1 2 670 197 65 32 0 chr12 11153051 11153082 -110104448 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2 670 940 121 6 51 chr12 11153136 11153293 -110104237 - B1_Mur4 SINE Alu 0 150 1 2 670 236 298 61 61 chr12 11153616 11153748 -110103782 + MIR SINE MIR 116 247 -15 2 670 708 257 91 0 chr12 11153886 11154073 -110103457 + ID_B1 SINE B4 2 205 -19 2 670 984 250 70 88 chr12 11154676 11154754 -110102776 + MTE2a LTR MaLR 1 79 -300 2 670 1566 47 11 0 chr12 11154754 11154944 -110102586 + B2_Mm1t SINE B2 2 193 0 2 670 984 250 70 88 chr12 11154944 11155251 -110102279 + MTE2a LTR MaLR 80 379 0 2 670 21 36 0 0 chr12 11157070 11157098 -110100432 + GC_rich Low_complexity Low_complexity 1 28 0 2 670 648 247 6 41 chr12 11158422 11158591 -110098939 - RSINE1 SINE B4 0 165 3 2 670 195 274 58 23 chr12 11160070 11160156 -110097374 + L4 LINE RTE 1740 1828 -201 2 670 291 54 0 0 chr12 11160275 11160312 -110097218 + (TTG)n Simple_repeat Simple_repeat 2 38 0 2 670 536 288 11 29 chr12 11161309 11161484 -110096046 + ORR1E-int LTR MaLR 3 174 -1406 2 670 1871 289 70 31 chr12 11161541 11162313 -110095217 + ORR1E-int LTR MaLR 860 1565 -15 2 670 574 260 27 91 chr12 11162508 11162575 -110094955 + B3A SINE B2 2 65 -133 2 670 191 36 0 35 chr12 11162575 11162604 -110094926 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 670 574 249 37 92 chr12 11162604 11162753 -110094777 + B3A SINE B2 66 206 -10 2 670 1339 236 59 7 chr12 11163128 11163431 -110094099 + Lx6 LINE L1 7115 7433 -27 2 670 317 299 19 0 chr12 11163660 11163767 -110093763 + MER81 DNA AcHobo 5 113 -1 2 670 237 392 16 8 chr12 11163849 11163970 -110093560 + MLT1J LTR MaLR 160 281 -231 2 670 849 238 155 39 chr12 11164187 11164445 -110093085 - B4A SINE B4 -4 288 1 2 670 268 326 153 20 chr12 11164451 11164745 -110092785 - L1ME5 LINE L1 -250 5944 5612 2 670 1637 181 50 15 chr12 11165203 11165540 -110091990 + ORR1B1 LTR MaLR 1 349 -45 2 670 1473 191 51 43 chr12 11165540 11165890 -110091640 + Lx2B LINE L1 6648 7000 0 2 670 315 172 0 0 chr12 11165897 11165955 -110091575 + ORR1B1 LTR MaLR 337 394 0 2 670 320 94 19 0 chr12 11165978 11166031 -110091499 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 2 670 2759 133 39 5 chr12 11166111 11166548 -110090982 + Lx4A LINE L1 6603 7054 -4 2 670 458 364 27 16 chr12 11166893 11167150 -110090380 + LTR53 LTR ERVL 189 448 -71 2 670 304 297 62 98 chr12 11167222 11167446 -110090084 + MTEa LTR MaLR 1 216 -163 2 670 290 338 88 97 chr12 11167446 11167553 -110089977 + MLT2B3 LTR ERVL 1 328 -226 2 670 232 284 53 35 chr12 11167562 11167675 -110089855 + MT2A LTR ERVL 326 440 -93 2 670 525 273 8 8 chr12 11167897 11168030 -110089500 + ID_B1 SINE B4 90 222 -2 2 670 477 115 0 0 chr12 11169013 11169091 -110088439 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 670 734 210 14 122 chr12 11169246 11169468 -110088062 - B3A SINE B2 0 198 1 2 670 416 306 27 27 chr12 11169752 11169900 -110087630 + RSINE1 SINE B4 5 152 -13 2 670 782 184 14 0 chr12 11169947 11170088 -110087442 - B1_Mur4 SINE Alu -6 144 2 2 670 396 283 36 14 chr12 11170090 11170230 -110087300 - Tigger5 DNA MER2_type -90 2316 2174 2 670 2636 34 37 127 chr12 11170279 11170680 -110086850 - RLTR10B2 LTR ERVK 0 365 1 2 670 888 154 0 0 chr12 11170728 11170884 -110086646 + (CA)n Simple_repeat Simple_repeat 2 157 0 2 670 441 0 0 0 chr12 11171216 11171265 -110086265 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2 670 1518 86 30 21 chr12 11171265 11171493 -110086037 - Lx3A LINE L1 -15 6966 6735 2 670 316 271 163 54 chr12 11171987 11172190 -110085340 + MLT1A0 LTR MaLR 119 343 -22 2 670 252 0 0 0 chr12 11172321 11172349 -110085181 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2 670 638 184 136 0 chr12 11174133 11174258 -110083272 - B1_Mus2 SINE Alu -1 146 5 2 670 1042 184 38 24 chr12 11174398 11174609 -110082921 - B3 SINE B2 -2 214 1 2 670 246 264 27 36 chr12 11175014 11175124 -110082406 - LTR81A LTR ERV1? -1164 186 78 2 670 691 273 0 0 chr12 11175181 11175262 -110082268 + ID SINE ID 3 83 -141 2 670 294 305 126 0 chr12 11175262 11175357 -110082173 + PB1D10 SINE Alu 3 109 -8 2 670 904 151 6 6 chr12 11175401 11175581 -110081949 + GA-rich Low_complexity Low_complexity 1 180 0 2 670 239 122 20 0 chr12 11175582 11175631 -110081899 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 670 1196 49 0 0 chr12 11176170 11176313 -110081217 + B1_Mus1 SINE Alu 1 143 -5 2 670 1036 138 0 0 chr12 11176359 11176519 -110081011 + B2_Mm2 SINE B2 1 160 -35 2 670 198 0 0 0 chr12 11176520 11176542 -110080988 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2 670 3314 51 2 2 chr12 11176555 11176951 -110080579 - MTA_Mm LTR MaLR 0 396 1 2 670 459 0 0 0 chr12 11176951 11177002 -110080528 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 670 395 351 7 0 chr12 11177693 11177841 -110079689 + RSINE1 SINE B4 3 151 -14 3 670 402 21 0 0 chr12 11178400 11178447 -110079083 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 3 670 728 287 4 69 chr12 11178477 11178724 -110078806 - B4 SINE B4 -59 233 3 3 670 630 259 243 0 chr12 11178732 11179054 -110078476 - MTD LTR MaLR -2 417 18 3 670 198 0 0 0 chr12 11179056 11179078 -110078452 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 3 670 297 51 0 0 chr12 11179187 11179226 -110078304 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 3 670 238 132 0 0 chr12 11179263 11179301 -110078229 - B1_Mus1 SINE Alu -108 40 3 3 670 644 266 56 47 chr12 11179378 11179539 -110077991 + B3 SINE B2 2 170 -46 3 670 189 0 0 0 chr12 11179539 11179560 -110077970 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 670 644 266 56 47 chr12 11179560 11179611 -110077919 + B3 SINE B2 171 216 0 3 670 741 187 14 7 chr12 11179625 11179765 -110077765 + B1_Mur1 SINE Alu 1 141 -8 3 670 221 119 24 0 chr12 11179842 11179884 -110077646 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 670 240 250 0 0 chr12 11179901 11179953 -110077577 + (CCCA)n Simple_repeat Simple_repeat 2 53 0 3 670 434 331 16 16 chr12 11180553 11180740 -110076790 - B3A SINE B2 -11 187 1 3 670 326 250 10 20 chr12 11180831 11180929 -110076601 + (CATATA)n Simple_repeat Simple_repeat 3 99 0 3 670 2332 179 29 13 chr12 11181938 11182392 -110075138 - Lx2B LINE L1 -222 6778 6318 3 670 729 245 48 29 chr12 11182399 11182609 -110074921 + Lx2B LINE L1 6786 6999 -1 3 670 1078 74 0 0 chr12 11182683 11182832 -110074698 + L1Md_F2 LINE L1 6433 6581 -1 3 670 646 241 114 11 chr12 11182924 11183100 -110074430 - ID_B1 SINE B4 -25 199 6 3 670 742 259 72 9 chr12 11183255 11183477 -110074053 - MLT1A0 LTR MaLR 0 365 130 3 670 2338 62 3 48 chr12 11183618 11183955 -110073575 - RLTRETN_Mm LTR ERVK 0 322 1 3 670 489 221 55 61 chr12 11186172 11186279 -110071251 + Lx7 LINE L1 7254 7363 -333 3 670 183 42 0 0 chr12 11186279 11186303 -110071227 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 670 489 221 55 61 chr12 11186303 11186359 -110071171 + Lx7 LINE L1 7364 7416 -280 3 670 354 272 71 16 chr12 11186419 11186546 -110070984 + Lx7 LINE L1 7563 7696 0 3 670 838 133 22 0 chr12 11186561 11186696 -110070834 + B1_Mus1 SINE Alu 5 142 -6 3 670 646 93 28 0 chr12 11186715 11186822 -110070708 + (GGAGA)n Simple_repeat Simple_repeat 1 110 0 3 670 447 252 0 10 chr12 11186896 11187000 -110070530 - B3 SINE B2 -112 104 2 3 670 186 71 0 0 chr12 11187041 11187069 -110070461 + (CAGA)n Simple_repeat Simple_repeat 4 31 0 3 670 613 291 0 7 chr12 11187069 11187218 -110070312 - B3A SINE B2 -50 148 1 3 670 1601 99 13 9 chr12 11187353 11187578 -110069952 - URR1A DNA MER1_type 0 226 1 3 670 5129 143 45 50 chr12 11187605 11188568 -110068962 + RMER17B LTR ERVK 1 958 0 3 670 4693 215 28 8 chr12 11189575 11190514 -110067016 + Lx5 LINE L1 6093 7050 0 3 670 207 0 0 0 chr12 11190636 11190659 -110066871 + (A)n Simple_repeat Simple_repeat 1 23 0 3 670 459 118 0 13 chr12 11191650 11191727 -110065803 - B3A SINE B2 -122 76 1 3 670 230 182 146 0 chr12 11192026 11192081 -110065449 + ID4_ SINE ID 2 64 -19 3 670 191 156 44 0 chr12 11192085 11192130 -110065400 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3 670 3463 80 125 33 chr12 11192209 11192728 -110064802 - RMER2 LTR ERV1 0 567 1 3 670 1831 91 8 4 chr12 11192730 11193013 -110064517 + L1_Mus3 LINE L1 6373 6638 0 3 670 1212 316 72 44 chr12 11193459 11193985 -110063545 - MuRRS4-int LTR ERV1 -1053 4010 3470 3 670 36089 35 0 0 chr12 11194341 11199946 -110057584 + L1Md_T LINE L1 1 5589 -297 3 670 9194 4 0 0 chr12 11199946 11200942 -110056588 + L1Md_T LINE L1 5590 6585 0 3 670 358 364 52 9 chr12 11200968 11201198 -110056332 - MuLV-int LTR ERV1 -3340 4266 4027 3 670 729 34 0 0 chr12 11202487 11202575 -110054955 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 670 21 0 0 0 chr12 11203359 11203380 -110054150 + GC_rich Low_complexity Low_complexity 1 21 0 3 670 285 29 0 0 chr12 11203982 11204016 -110053514 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 3 670 745 153 0 0 chr12 11204016 11204147 -110053383 - B1_Mus1 SINE Alu -15 133 3 3 670 277 257 34 68 chr12 11204173 11204290 -110053240 - Lx8 LINE L1 -1 7472 7360 3 670 207 78 39 19 chr12 11204522 11204574 -110052956 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 3 670 405 0 0 0 chr12 11204883 11204928 -110052602 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 670 233 146 83 0 chr12 11205711 11205759 -110051771 - MLT1A0 LTR MaLR 0 365 314 3 670 1050 45 53 0 chr12 11205785 11205917 -110051613 - B1_Mm SINE Alu -8 139 1 3 670 316 306 74 0 chr12 11205918 11206039 -110051491 - MLT1A1 LTR MaLR -38 370 241 3 670 584 234 20 7 chr12 11206055 11206201 -110051329 + B1_Mur2 SINE Alu 2 149 0 3 670 386 302 102 40 chr12 11206251 11206427 -110051103 - MLT1A1 LTR MaLR -168 240 54 3 670 369 172 120 10 chr12 11206578 11206678 -110050852 - B1_Mus1 SINE Alu 0 148 38 3 670 198 0 0 0 chr12 11206699 11206721 -110050809 + (CAA)n Simple_repeat Simple_repeat 2 23 0 3 670 1348 85 37 0 chr12 11206722 11206910 -110050620 + B2_Mm2 SINE B2 1 195 0 3 670 671 164 17 8 chr12 11207220 11207337 -110050193 + PB1D9 SINE Alu 2 119 -1 3 670 439 319 75 23 chr12 11207343 11207649 -110049881 + MLT1A0 LTR MaLR 33 354 -11 3 670 936 122 36 0 chr12 11208565 11208704 -110048826 + B1_Mur4 SINE Alu 1 144 -6 3 670 1185 148 92 0 chr12 11208840 11209057 -110048473 - MTC LTR MaLR -176 245 9 3 670 376 227 157 16 chr12 11209060 11209181 -110048349 + B4A SINE B4 99 236 -56 3 670 195 114 0 0 chr12 11209215 11209250 -110048280 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 670 241 213 0 47 chr12 11210634 11210698 -110046832 + (CACCC)n Simple_repeat Simple_repeat 3 63 0 3 670 194 326 90 21 chr12 11211073 11211217 -110046313 + MIRb SINE MIR 42 195 -73 3 670 528 319 11 196 chr12 11211693 11211797 -110045733 - B4A SINE B4 0 292 221 3 670 285 29 0 0 chr12 11211797 11211831 -110045699 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 670 785 167 7 0 chr12 11211831 11211969 -110045561 - B1_Mur3 SINE Alu -10 139 1 3 670 528 319 11 196 chr12 11211969 11212221 -110045309 - B4A SINE B4 -72 220 2 3 670 215 140 20 0 chr12 11212783 11212833 -110044697 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 670 192 279 0 0 chr12 11213684 11213727 -110043803 + MIR SINE MIR 118 160 -102 3 670 396 0 0 0 chr12 11214658 11214702 -110042828 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 670 297 75 0 0 chr12 11217131 11217171 -110040359 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 670 285 29 0 0 chr12 11217171 11217205 -110040325 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 670 226 338 0 0 chr12 11217637 11217708 -110039822 + CT-rich Low_complexity Low_complexity 2 72 0 3 670 273 29 0 0 chr12 11217708 11217742 -110039788 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 670 598 143 232 0 chr12 11217742 11217854 -110039676 - B1_Mur3 SINE Alu -10 139 2 3 670 749 297 18 9 chr12 11217906 11218127 -110039403 + ID_B1 SINE B4 2 224 0 3 670 423 345 30 30 chr12 11219970 11220167 -110037363 + MER44D DNA MER2_type 2 198 -507 3 670 496 223 25 91 chr12 11220160 11220357 -110037173 + MER44D DNA MER2_type 388 571 -134 3 670 1086 82 0 39 chr12 11220377 11220530 -110037000 - B1_Mus1 SINE Alu 0 148 2 3 670 680 163 110 40 chr12 11220586 11220759 -110036771 + B2_Mm2 SINE B2 6 190 -5 3 670 31 58 0 0 chr12 11222066 11222118 -110035412 + AT_rich Low_complexity Low_complexity 1 52 0 3 670 361 149 20 41 chr12 11222813 11222911 -110034619 - L1Md_F2 LINE L1 0 6582 6487 3 670 261 0 0 0 chr12 11222931 11222960 -110034570 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3 670 1025 82 0 0 chr12 11222960 11223095 -110034435 - B1_Mus2 SINE Alu -12 135 1 3 670 555 268 26 72 chr12 11223441 11223584 -110033946 + B1_Mur2 SINE Alu 1 137 -12 3 670 351 0 0 0 chr12 11223584 11223623 -110033907 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3 670 233 347 16 99 chr12 11223871 11224063 -110033467 + Lx8 LINE L1 7134 7309 -164 3 670 22 35 0 0 chr12 11224211 11224240 -110033290 + AT_rich Low_complexity Low_complexity 1 29 0 3 670 385 212 99 28 chr12 11225388 11225529 -110032001 + L1ME4a LINE L1 5332 5482 -642 3 670 357 293 112 37 chr12 11225574 11225762 -110031768 + L1ME4a LINE L1 5643 5844 -280 3 670 1034 186 4 65 chr12 11225816 11226046 -110031484 - B3 SINE B2 0 216 1 3 670 198 0 0 0 chr12 11226108 11226130 -110031400 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 3 670 1167 138 61 9 chr12 11226516 11226729 -110030801 + URR1B DNA MER1_type 2 225 0 3 670 691 244 115 11 chr12 11226868 11227042 -110030488 + B3A SINE B2 7 198 0 3 670 302 204 144 0 chr12 11227086 11227218 -110030312 + Lx9 LINE L1 7493 7643 -1 3 670 680 281 47 37 chr12 11227515 11227729 -110029801 - B3 SINE B2 0 216 1 3 670 189 74 0 0 chr12 11227784 11227811 -110029719 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 670 796 174 0 51 chr12 11227811 11227961 -110029569 - B1_Mur3 SINE Alu -6 143 1 3 670 375 209 8 98 chr12 11229393 11229515 -110028015 + MT2B LTR ERVL 148 258 -343 3 670 714 151 46 31 chr12 11229425 11229555 -110027975 + B1_Mur4 SINE Alu 12 143 -7 3 670 377 266 11 0 chr12 11229577 11229660 -110027870 + PB1D10 SINE Alu 1 83 -34 3 670 183 80 0 0 chr12 11229660 11229685 -110027845 + (CAGAA)n Simple_repeat Simple_repeat 1 25 0 3 670 273 57 0 0 chr12 11230381 11230416 -110027114 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 670 198 0 0 0 chr12 11230480 11230502 -110027028 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 670 1173 129 114 0 chr12 11230667 11230868 -110026662 - URR1B DNA MER1_type -1 224 1 3 670 347 227 11 0 chr12 11230955 11231043 -110026487 + MER33 DNA MER1_type 132 220 -104 4 670 468 0 0 0 chr12 11231892 11231944 -110025586 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 670 1560 52 0 0 chr12 11232231 11232423 -110025107 - B2_Mm1a SINE B2 0 193 2 4 670 229 194 0 0 chr12 11232424 11232460 -110025070 - RSINE1 SINE B4 -46 119 84 4 670 285 311 104 0 chr12 11234057 11234199 -110023331 + MIRb SINE MIR 6 159 -49 4 670 696 186 47 0 chr12 11234772 11234901 -110022629 - B1_Mm SINE Alu -10 137 3 4 670 218 32 32 0 chr12 11234965 11234996 -110022534 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 4 670 522 193 35 0 chr12 11235027 11235198 -110022332 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 4 670 519 239 160 14 chr12 11235983 11236127 -110021403 - B3 SINE B2 -11 205 41 4 670 1037 120 123 21 chr12 11236128 11236315 -110021215 - URR1A DNA MER1_type -20 206 1 4 670 418 236 124 48 chr12 11236315 11236337 -110021193 + CYRA11_Mm Unknown Y-chromosome 191 415 -202 4 670 398 296 122 0 chr12 11237009 11237124 -110020406 + ID_B1 SINE B4 2 130 -94 4 670 209 313 15 0 chr12 11238009 11238076 -110019454 + MIRc SINE MIR 25 92 -176 4 670 198 0 0 0 chr12 11238871 11238893 -110018637 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 670 396 0 0 0 chr12 11238893 11238936 -110018594 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 670 190 241 109 92 chr12 11240289 11240408 -110017122 - L2a LINE L2 -86 3340 3220 4 670 1363 86 21 0 chr12 11240484 11240670 -110016860 + B2_Mm2 SINE B2 2 191 -4 4 670 21 0 0 0 chr12 11240707 11240728 -110016802 + AT_rich Low_complexity Low_complexity 1 21 0 4 670 1019 232 25 0 chr12 11240728 11240926 -110016604 - B3 SINE B2 -12 204 2 4 670 2766 6 24 0 chr12 11241031 11241366 -110016164 + L1Md_T LINE L1 5244 5586 -297 4 670 8401 32 4 0 chr12 11241366 11242358 -110015172 + L1Md_T LINE L1 5587 6582 0 4 670 194 349 32 0 chr12 11242754 11242817 -110014713 + L2b LINE L2 3296 3360 -15 4 670 1063 97 7 7 chr12 11243216 11243362 -110014168 + B1_Mus1 SINE Alu 2 147 -1 4 670 234 254 0 0 chr12 11243363 11243434 -110014096 + A-rich Low_complexity Low_complexity 1 71 0 4 670 1124 88 0 0 chr12 11243890 11244037 -110013493 - B1_Mus2 SINE Alu 0 147 1 4 670 264 324 71 44 chr12 11244107 11244220 -110013310 - B3A SINE B2 -9 189 74 4 670 417 333 67 18 chr12 11244279 11244337 -110013193 + B4 SINE B4 26 91 -201 4 670 847 142 16 0 chr12 11244337 11244464 -110013066 + B1_Mur4 SINE Alu 2 130 -20 4 670 618 261 130 16 chr12 11245702 11246017 -110011513 - L1M4 LINE L1 -1174 4972 4622 4 670 759 154 8 8 chr12 11246101 11246225 -110011305 - B1_Mur3 SINE Alu -2 147 24 4 670 476 258 67 151 chr12 11246226 11246374 -110011156 - L1M4 LINE L1 -1588 4558 4430 4 670 1261 20 0 13 chr12 11246374 11246524 -110011006 - B1_Mus1 SINE Alu 0 148 1 4 670 476 258 67 151 chr12 11246524 11246703 -110010827 - L1M4 LINE L1 -1717 4429 4273 4 670 791 193 29 0 chr12 11246703 11246843 -110010687 - B1_Mur3 SINE Alu -5 144 1 4 670 476 258 67 151 chr12 11246843 11246944 -110010586 - L1M4 LINE L1 -1874 4272 4165 4 670 1174 43 0 7 chr12 11247524 11247661 -110009869 + B1_Mm SINE Alu 2 138 -9 4 670 180 27 26 51 chr12 11247661 11247700 -110009830 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 4 670 293 315 17 92 chr12 11247816 11247935 -110009595 - ID_B1 SINE B4 -21 203 94 4 670 1189 55 7 0 chr12 11250465 11250611 -110006919 + B1_Mus2 SINE Alu 1 147 0 4 670 575 238 137 68 chr12 11250880 11251289 -110006241 - Lx8 LINE L1 -1546 5927 5467 4 670 3688 182 167 75 chr12 11251311 11251661 -110005869 + MTC-int LTR MaLR 14 387 -871 4 670 644 176 130 0 chr12 11251661 11251792 -110005738 + B1_Mus1 SINE Alu 1 148 0 4 670 3688 182 167 75 chr12 11251792 11252511 -110005019 + MTC-int LTR MaLR 388 1182 -76 4 670 266 274 0 0 chr12 11252518 11252569 -110004961 + RSINE1 SINE B4 91 141 -24 4 670 263 122 20 0 chr12 11252600 11252649 -110004881 + (CATA)n Simple_repeat Simple_repeat 1 50 0 4 670 830 233 14 29 chr12 11253399 11253607 -110003923 - B3 SINE B2 -11 205 1 4 670 1205 28 7 14 chr12 11253935 11254082 -110003448 - B1_Mus1 SINE Alu -1 147 2 4 670 501 192 29 9 chr12 11254396 11254501 -110003029 - PB1D9 SINE Alu -1 119 13 4 670 180 0 0 0 chr12 11254514 11254534 -110002996 + (T)n Simple_repeat Simple_repeat 1 20 0 4 670 330 162 23 53 chr12 11254534 11254645 -110002885 - B1_Mur2 SINE Alu 0 149 5 4 670 62 14 0 0 chr12 11254718 11254787 -110002743 + AT_rich Low_complexity Low_complexity 1 69 0 4 670 984 243 0 19 chr12 11254793 11255003 -110002527 - B3 SINE B2 -6 210 5 4 670 21 57 0 0 chr12 11255163 11255198 -110002332 + AT_rich Low_complexity Low_complexity 1 35 0 4 670 184 317 33 0 chr12 11255551 11255611 -110001919 - MIRb SINE MIR -67 201 140 4 670 2326 191 42 64 chr12 11256051 11256822 -110000708 - RMER6A LTR ERVK -2 754 1 4 670 332 303 87 47 chr12 11257088 11257237 -110000293 - RSINE1 SINE B4 -6 159 5 4 670 594 151 197 25 chr12 11257273 11257395 -110000135 - B1_Mur1 SINE Alu -4 145 3 4 670 22 0 0 0 chr12 11257399 11257421 -110000109 + AT_rich Low_complexity Low_complexity 1 22 0 4 670 597 290 28 28 chr12 11258182 11258353 -109999177 - ID_B1 SINE B4 -43 249 77 4 670 261 0 0 0 chr12 11258959 11258988 -109998542 + (T)n Simple_repeat Simple_repeat 1 29 0 4 670 983 114 0 26 chr12 11259422 11259575 -109997955 + B1_Mur3 SINE Alu 1 149 0 4 670 207 0 0 0 chr12 11259575 11259598 -109997932 + (CAAAAA)n Simple_repeat Simple_repeat 5 27 0 4 670 198 0 0 0 chr12 11259617 11259639 -109997891 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 4 670 402 256 35 93 chr12 11260616 11260788 -109996742 - RSINE1 SINE B4 0 165 4 4 670 243 279 43 14 chr12 11261760 11261829 -109995701 - RSINE1 SINE B4 -92 73 3 4 670 1467 49 27 0 chr12 11262224 11262407 -109995123 + B2_Mm1a SINE B2 1 188 -5 4 670 1981 247 133 36 chr12 11262418 11263199 -109994331 + Lx8 LINE L1 6450 7306 -167 4 670 405 200 27 0 chr12 11263214 11263289 -109994241 + MTC LTR MaLR 10 86 -335 4 670 423 19 0 0 chr12 11263291 11263344 -109994186 - B1_Mus1 SINE Alu -95 53 1 4 670 351 172 0 15 chr12 11263344 11263356 -109994174 - ID_B1 SINE B4 -91 133 70 4 670 541 288 76 106 chr12 11263419 11263617 -109993913 + B3A SINE B2 2 193 -2 4 670 271 219 66 59 chr12 11263930 11264066 -109993464 + L1MC5 LINE L1 7603 7739 -222 4 670 1608 253 81 59 chr12 11264094 11264599 -109992931 + RMER15 LTR ERVL 10 525 -50 4 670 1107 62 21 0 chr12 11264801 11264945 -109992585 - B1_Mus1 SINE Alu 0 148 2 4 670 269 26 0 0 chr12 11265499 11265537 -109991993 - B1_Mur4 SINE Alu 0 150 113 4 670 442 202 71 0 chr12 11265828 11265912 -109991618 - PB1D9 SINE Alu -6 114 25 4 670 676 230 7 0 chr12 11266033 11266172 -109991358 + B1_Mus2 SINE Alu 1 140 -7 4 670 595 295 27 19 chr12 11266486 11266745 -109990785 + Lx9 LINE L1 7212 7472 -172 4 670 26 0 0 0 chr12 11266857 11266883 -109990647 + AT_rich Low_complexity Low_complexity 1 26 0 4 670 378 302 31 0 chr12 11266889 11266985 -109990545 + B1F SINE Alu 47 145 -4 4 670 1108 270 97 11 chr12 11266995 11267344 -109990186 + Lx8 LINE L1 6471 6849 -624 4 670 234 345 117 9 chr12 11267465 11267576 -109989954 - MIRb SINE MIR -106 162 40 4 670 664 255 12 56 chr12 11267990 11268152 -109989378 - RSINE1 SINE B4 0 165 11 4 670 4386 33 2 0 chr12 11268153 11268665 -109988865 + L1Md_T LINE L1 6070 6582 0 4 670 805 174 14 0 chr12 11269556 11269694 -109987836 - B1_Mus1 SINE Alu -6 142 3 4 670 412 91 0 0 chr12 11270608 11270663 -109986867 - RLTRETN_Mm LTR ERVK 0 322 268 4 671 21 71 0 0 chr12 11273275 11273317 -109984213 + GC_rich Low_complexity Low_complexity 1 42 0 4 671 863 181 109 15 chr12 11273953 11274155 -109983375 + ID_B1 SINE B4 1 221 -3 4 671 396 241 104 15 chr12 11274181 11274316 -109983214 + B1F SINE Alu 3 149 0 4 671 553 261 100 11 chr12 11274865 11275055 -109982475 - B3 SINE B2 -7 209 3 4 671 237 98 0 0 chr12 11275151 11275192 -109982338 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 671 216 123 172 17 chr12 11275703 11275761 -109981769 + MIR SINE MIR 81 147 -61 4 671 216 0 0 0 chr12 11276318 11276342 -109981188 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 4 671 210 235 20 0 chr12 11276356 11276407 -109981123 + B1F SINE Alu 95 146 -3 4 671 960 134 7 0 chr12 11277300 11277442 -109980088 - B1_Mus1 SINE Alu -5 143 1 4 671 283 256 111 0 chr12 11277814 11277904 -109979626 + Charlie1a DNA MER1_type 1314 1413 -42 4 671 600 282 193 44 chr12 11279016 11279701 -109977829 + L1MD1 LINE L1 5438 6224 -18 4 671 377 162 283 9 chr12 11280028 11280134 -109977396 - B1_Mur4 SINE Alu -15 135 1 4 671 518 329 18 75 chr12 11280353 11280580 -109976950 + MER20 DNA MER1_type 1 214 -5 4 671 695 202 134 23 chr12 11281129 11281317 -109976213 - B3 SINE B2 -3 213 1 4 671 23 33 0 0 chr12 11282464 11282494 -109975036 + AT_rich Low_complexity Low_complexity 1 30 0 4 671 372 325 50 13 chr12 11283307 11283466 -109974064 - Lx6 LINE L1 -61 7399 7235 4 671 600 53 0 0 chr12 11283510 11283586 -109973944 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 671 433 131 115 35 chr12 11283719 11283806 -109973724 + URR1B DNA MER1_type 132 225 0 4 671 854 148 0 45 chr12 11285011 11285167 -109972363 - B1_Mur4 SINE Alu -1 149 1 4 671 267 31 0 0 chr12 11285193 11285225 -109972305 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 671 1145 222 136 24 chr12 11285225 11285557 -109971973 - ORR1D1 LTR MaLR -3 371 3 5 671 252 233 83 0 chr12 11285559 11285619 -109971911 - ORR1D1-int LTR MaLR 0 1370 1306 5 671 649 208 8 0 chr12 11285622 11285747 -109971783 + MTC LTR MaLR 217 342 -79 5 671 524 269 33 40 chr12 11285744 11285895 -109971635 - MTB_Mm LTR MaLR -195 212 63 5 671 734 163 67 0 chr12 11286034 11286169 -109971361 - B1_Mur4 SINE Alu -6 144 1 5 671 351 0 0 0 chr12 11286672 11286711 -109970819 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 671 945 145 0 27 chr12 11287546 11287695 -109969835 + B1_Mur4 SINE Alu 4 148 -2 5 671 555 213 120 45 chr12 11287780 11287913 -109969617 - B1_Mur1 SINE Alu 0 149 7 5 671 487 337 59 16 chr12 11288620 11288876 -109968654 - B4 SINE B4 0 292 26 5 671 1121 107 62 0 chr12 11289400 11289578 -109967952 + B2_Mm2 SINE B2 2 190 -5 5 671 25 0 0 0 chr12 11290045 11290070 -109967460 + AT_rich Low_complexity Low_complexity 1 25 0 5 671 243 241 35 0 chr12 11290174 11290232 -109967298 + (TATG)n Simple_repeat Simple_repeat 4 63 0 5 671 213 94 0 0 chr12 11290532 11290564 -109966966 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 671 477 186 235 8 chr12 11290567 11290686 -109966844 - B1_Mus1 SINE Alu 0 148 3 5 671 336 175 0 0 chr12 11291259 11291322 -109966208 + T-rich Low_complexity Low_complexity 1 63 0 5 671 734 49 95 11 chr12 11291322 11291442 -109966088 - B1_Mm SINE Alu 0 149 21 5 671 998 220 110 27 chr12 11293037 11293336 -109964194 - RCHARR1 DNA MER1_type -106 868 545 5 671 1066 120 23 0 chr12 11293344 11293519 -109964011 - B2_Mm2 SINE B2 -2 193 15 5 671 206 136 23 0 chr12 11293523 11293567 -109963963 + T-rich Low_complexity Low_complexity 2 46 0 5 671 657 40 10 0 chr12 11293618 11293717 -109963813 - L1Md_F3 LINE L1 0 6584 6485 5 671 757 96 322 0 chr12 11293744 11293890 -109963640 - B2_Mm1t SINE B2 0 193 1 5 671 1904 252 49 21 chr12 11293916 11294427 -109963103 - RCHARR1 DNA MER1_type -445 529 5 5 671 2109 100 25 13 chr12 11294750 11295065 -109962465 - ORR1A2 LTR MaLR -2 325 7 5 671 1091 206 5 20 chr12 11295370 11295568 -109961962 - B3 SINE B2 -11 205 11 5 671 299 362 60 8 chr12 11295699 11295816 -109961714 - RSINE1 SINE B4 -40 125 3 5 671 640 199 22 30 chr12 11296176 11296311 -109961219 - B1_Mur3 SINE Alu -13 136 3 5 671 426 213 143 45 chr12 11296954 11297087 -109960443 - B1_Mur1 SINE Alu 0 149 4 5 671 1071 96 0 0 chr12 11297188 11297334 -109960196 - B1_Mus1 SINE Alu -1 147 2 5 671 316 213 110 60 chr12 11297827 11297927 -109959603 - PB1D10 SINE Alu -12 105 1 5 671 1445 58 11 5 chr12 11298922 11299112 -109958418 - B2_Mm1t SINE B2 -2 191 1 5 671 705 230 92 0 chr12 11299494 11299646 -109957884 - B3A SINE B2 -30 168 3 5 671 237 320 48 39 chr12 11299667 11299771 -109957759 - LTR87 LTR ERVL? -412 212 108 5 671 379 283 116 8 chr12 11300651 11300772 -109956758 - B4A SINE B4 -150 142 9 5 671 335 316 105 20 chr12 11300908 11301108 -109956422 + MIR SINE MIR 8 224 -38 5 671 364 290 10 39 chr12 11302085 11302189 -109955341 + U6 snRNA snRNA 1 101 -6 5 671 207 0 0 0 chr12 11302449 11302472 -109955058 + (A)n Simple_repeat Simple_repeat 1 23 0 5 671 219 269 19 0 chr12 11302656 11302708 -109954822 + ID4 SINE ID 22 74 -9 5 671 294 73 0 0 chr12 11303492 11303533 -109953997 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 671 960 176 371 26 chr12 11304215 11304525 -109953005 - MTD LTR MaLR 0 419 3 5 671 1260 27 0 0 chr12 11306408 11306555 -109950975 + B1_Mus1 SINE Alu 2 148 0 5 671 245 290 32 0 chr12 11306765 11306827 -109950703 - ID4 SINE ID -12 71 8 5 671 511 242 125 18 chr12 11308031 11308199 -109949331 + B3A SINE B2 2 187 -11 5 671 288 280 88 34 chr12 11308656 11308804 -109948726 + L1M5 LINE L1 5387 5542 -582 5 671 1531 246 54 57 chr12 11308900 11309683 -109947847 + L1Md_F LINE L1 219 898 -5621 5 671 7512 75 3 2 chr12 11309683 11310738 -109946792 + L1_Mus1 LINE L1 5510 6565 -2 5 671 1119 88 0 0 chr12 11310746 11310893 -109946637 + B1_Mus2 SINE Alu 1 147 0 5 671 411 274 45 13 chr12 11311340 11311495 -109946035 + RSINE1 SINE B4 2 161 -4 5 671 1412 83 16 0 chr12 11311520 11311712 -109945818 + B2_Mm2 SINE B2 1 195 0 5 671 213 212 147 29 chr12 11312015 11312083 -109945447 + ID SINE ID 3 78 -146 5 671 983 97 22 22 chr12 11312115 11312295 -109945235 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 671 189 94 0 0 chr12 11312300 11312332 -109945198 + (GGA)n Simple_repeat Simple_repeat 3 34 0 5 671 245 292 101 0 chr12 11313386 11313475 -109944055 + L2a LINE L2 3309 3406 -20 5 671 231 61 0 0 chr12 11313706 11313739 -109943791 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 671 395 307 58 106 chr12 11313778 11314004 -109943526 - B4A SINE B4 -50 242 28 5 671 2033 137 43 30 chr12 11314549 11314942 -109942588 + RMER10B LTR ERVL 1 398 0 5 671 365 363 39 111 chr12 11315032 11315240 -109942290 + B4 SINE B4 8 195 -97 5 671 811 259 52 0 chr12 11315240 11315433 -109942097 + B3 SINE B2 2 204 -12 5 671 365 363 39 111 chr12 11315433 11315531 -109941999 + B4 SINE B4 196 292 0 5 671 574 295 19 33 chr12 11316824 11317038 -109940492 + L1MEg2 LINE L1 9 219 -6233 5 671 529 285 188 60 chr12 11317630 11317880 -109939650 + B4A SINE B4 1 282 -10 5 671 242 232 18 0 chr12 11317917 11317973 -109939557 + L1MC LINE L1 4536 4592 -1554 5 671 453 267 80 77 chr12 11317977 11318355 -109939175 - RMER17C LTR ERVK -499 407 1 5 671 348 341 66 7 chr12 11318731 11318867 -109938663 - RSINE1 SINE B4 -19 146 3 5 671 253 276 52 0 chr12 11319496 11319554 -109937976 + B1F SINE Alu 17 77 -72 5 671 684 258 72 0 chr12 11321066 11321260 -109936270 - B3 SINE B2 -8 208 1 5 671 232 48 48 0 chr12 11325103 11325145 -109932385 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 671 262 220 82 12 chr12 11325538 11325618 -109931912 + PB1D10 SINE Alu 32 125 -2 5 671 21 0 0 0 chr12 11325828 11325849 -109931681 + AT_rich Low_complexity Low_complexity 1 21 0 5 671 21 57 0 0 chr12 11326560 11326595 -109930935 + AT_rich Low_complexity Low_complexity 1 35 0 5 671 262 339 42 8 chr12 11327158 11327277 -109930253 + ORR1E LTR MaLR 24 146 -213 5 671 248 338 88 44 chr12 11328420 11328624 -109928906 + MLT1F-int LTR MaLR 562 774 -715 5 671 537 252 67 13 chr12 11328657 11328806 -109928724 + B3 SINE B2 48 204 -12 5 671 356 305 212 27 chr12 11328870 11328929 -109928601 + MLT1F-int LTR MaLR 1082 1139 -350 5 671 1174 70 0 66 chr12 11328929 11329111 -109928419 + L1_Mus1 LINE L1 6398 6567 0 5 671 356 305 212 27 chr12 11329111 11329344 -109928186 + MLT1F-int LTR MaLR 1140 1427 -62 5 671 1938 184 81 111 chr12 11329401 11329968 -109927562 - RMER4B LTR ERVK 0 585 36 5 671 1052 90 21 0 chr12 11330858 11331003 -109926527 + B1_Mus1 SINE Alu 1 148 0 5 671 333 0 0 0 chr12 11331252 11331289 -109926241 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 671 293 0 27 0 chr12 11333017 11333054 -109924476 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 671 988 233 187 17 chr12 11333518 11333876 -109923654 + MTD LTR MaLR 1 419 0 5 671 369 260 0 0 chr12 11334287 11334364 -109923166 - B4 SINE B4 -184 108 32 5 671 191 281 32 53 chr12 11334370 11334464 -109923066 + L2 LINE L2 2157 2248 -1171 5 671 2776 61 0 11 chr12 11334679 11335029 -109922501 + ORR1A0 LTR MaLR 1 346 0 5 671 225 0 0 0 chr12 11335165 11335190 -109922340 + (A)n Simple_repeat Simple_repeat 1 25 0 5 671 691 129 190 50 chr12 11335612 11335637 -109921893 + URR1A DNA MER1_type 5 40 -186 5 671 207 0 0 0 chr12 11335637 11335660 -109921870 + (TTGGGG)n Simple_repeat Simple_repeat 4 26 0 5 671 691 129 190 50 chr12 11335660 11335813 -109921717 + URR1A DNA MER1_type 41 207 -19 5 671 253 143 0 0 chr12 11336169 11336218 -109921312 + URR1A DNA MER1_type 177 225 -1 5 671 1200 279 31 11 chr12 11336448 11336807 -109920723 + MTE2b LTR MaLR 1 366 -13 5 671 2122 139 89 3 chr12 11336813 11337196 -109920334 + MTC LTR MaLR 1 416 -5 5 671 263 259 0 0 chr12 11337246 11337300 -109920230 + MER90a LTR ERV1 561 614 0 5 671 216 232 18 0 chr12 11337885 11337941 -109919589 - L2a LINE L2 -25 3401 3345 5 671 367 72 0 54 chr12 11338190 11338264 -109919266 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 5 671 476 285 53 40 chr12 11340113 11340263 -109917267 + RSINE1 SINE B4 3 154 -11 5 671 1022 111 69 151 chr12 11340443 11340634 -109916896 + URR1B DNA MER1_type 1 196 -29 5 671 824 143 256 0 chr12 11340634 11340802 -109916728 + B3 SINE B2 1 211 -5 5 671 1022 111 69 151 chr12 11340802 11340855 -109916675 + URR1B DNA MER1_type 197 225 0 5 671 228 243 66 26 chr12 11340882 11340958 -109916572 - MLT1G1 LTR MaLR 0 579 501 5 671 672 48 0 0 chr12 11340964 11341048 -109916482 + (TTTCC)n Simple_repeat Simple_repeat 2 85 0 5 671 501 237 91 8 chr12 11341705 11341837 -109915693 - B1F2 SINE Alu -5 144 2 5 671 1201 41 7 0 chr12 11343061 11343206 -109914324 + B1_Mm SINE Alu 2 147 0 5 671 216 0 0 0 chr12 11343215 11343239 -109914291 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 671 306 241 41 89 chr12 11343271 11343394 -109914136 - PB1D10 SINE Alu 0 117 1 5 671 216 333 67 48 chr12 11343308 11343412 -109914118 - B4A SINE B4 -119 173 68 5 671 400 211 144 0 chr12 11343514 11343604 -109913926 + B1_Mus2 SINE Alu 35 137 -10 5 671 251 341 11 0 chr12 11344016 11344104 -109913426 - L2b LINE L2 -1 3374 3286 5 671 1667 186 78 36 chr12 11344125 11344482 -109913048 + ORR1D1 LTR MaLR 1 372 -2 5 671 333 0 0 0 chr12 11345121 11345158 -109912372 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 671 4757 63 3 7 chr12 11345603 11346209 -109911321 - L1Md_F2 LINE L1 -1 6581 5978 6 671 2031 153 27 158 chr12 11346319 11346801 -109910729 + MTC LTR MaLR 1 419 -2 6 671 2933 217 99 68 chr12 11346803 11347868 -109909662 + MTC-int LTR MaLR 1 1098 0 6 671 270 140 31 109 chr12 11347872 11347936 -109909594 + MTC LTR MaLR 6 64 -357 6 671 414 0 0 0 chr12 11348592 11348638 -109908892 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 671 191 321 0 19 chr12 11348825 11348879 -109908651 + L2b LINE L2 3298 3350 -25 6 671 444 91 18 35 chr12 11349103 11349217 -109908313 + (TG)n Simple_repeat Simple_repeat 2 113 0 6 671 209 195 24 0 chr12 11350104 11350145 -109907385 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 6 671 235 289 0 0 chr12 11350145 11350197 -109907333 - MurSatRep1 Unknown Unknown -1857 280 229 6 671 774 280 18 23 chr12 11351220 11351439 -109906091 + B4 SINE B4 1 218 -74 6 671 232 271 112 103 chr12 11351344 11351451 -109906079 + B1_Mur1 SINE Alu 41 148 -1 6 671 921 102 0 0 chr12 11351564 11351721 -109905809 + (CA)n Simple_repeat Simple_repeat 1 157 0 6 671 941 176 8 8 chr12 11352156 11352393 -109905137 + CT-rich Low_complexity Low_complexity 1 237 0 6 671 595 301 6 0 chr12 11352431 11352597 -109904933 - ID_B1 SINE B4 -3 221 55 6 671 423 291 76 45 chr12 11353880 11353995 -109903535 - MIR SINE MIR -28 234 111 6 671 1193 139 113 5 chr12 11353995 11354198 -109903332 + URR1B DNA MER1_type 1 225 0 6 671 423 291 76 45 chr12 11354198 11354280 -109903250 - MIR SINE MIR -152 110 31 6 671 563 232 12 0 chr12 11354518 11354682 -109902848 + (TATATG)n Simple_repeat Simple_repeat 4 169 0 6 671 464 305 17 0 chr12 11354689 11354863 -109902667 + (TATG)n Simple_repeat Simple_repeat 1 177 0 6 671 266 292 116 55 chr12 11355892 11356073 -109901457 - MER33 DNA MER1_type -96 228 37 6 671 23 0 0 0 chr12 11356717 11356740 -109900790 + GC_rich Low_complexity Low_complexity 1 23 0 6 671 255 340 102 0 chr12 11356755 11356902 -109900628 + MIRb SINE MIR 90 251 -17 6 671 310 287 94 0 chr12 11357053 11357195 -109900335 - MIR SINE MIR -76 192 28 6 671 747 122 0 0 chr12 11357625 11357756 -109899774 + (TG)n Simple_repeat Simple_repeat 2 132 0 6 671 285 308 43 43 chr12 11358273 11358412 -109899118 - MER45A DNA Tip100 0 178 40 6 671 987 127 54 65 chr12 11359579 11359765 -109897765 - B2_Mm2 SINE B2 -8 187 4 6 671 1544 40 0 10 chr12 11359782 11359984 -109897546 - L1Md_F2 LINE L1 0 6582 6383 6 671 23 33 0 0 chr12 11360048 11360078 -109897452 + AT_rich Low_complexity Low_complexity 1 30 0 6 671 345 24 0 0 chr12 11360078 11360120 -109897410 + (TATG)n Simple_repeat Simple_repeat 2 43 0 6 671 590 256 20 66 chr12 11360731 11360928 -109896602 - B3A SINE B2 -1 197 10 6 671 1048 180 92 5 chr12 11361738 11361945 -109895585 - URR1B DNA MER1_type 0 225 1 6 671 28 0 0 0 chr12 11363611 11363639 -109893891 + AT_rich Low_complexity Low_complexity 1 28 0 6 671 232 231 141 0 chr12 11364924 11365002 -109892528 - MLT1D LTR MaLR 0 505 417 6 671 21 71 0 0 chr12 11366390 11366432 -109891098 + AT_rich Low_complexity Low_complexity 1 42 0 6 671 2316 172 19 24 chr12 11366461 11366884 -109890646 + MTC LTR MaLR 1 421 0 6 671 1857 194 60 6 chr12 11367142 11367490 -109890040 + ORR1B2 LTR MaLR 1 367 0 6 671 242 327 12 61 chr12 11368573 11368736 -109888794 + MLT1E2 LTR MaLR 1 155 -472 6 671 417 20 0 0 chr12 11369222 11369272 -109888258 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 671 378 0 0 0 chr12 11370784 11370826 -109886704 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 6 671 351 0 0 0 chr12 11370900 11370939 -109886591 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 671 1317 78 0 0 chr12 11372563 11372742 -109884788 + (TTCTC)n Simple_repeat Simple_repeat 1 179 0 6 671 429 20 0 0 chr12 11372754 11372804 -109884726 + (TCCCC)n Simple_repeat Simple_repeat 5 54 0 6 671 379 331 45 0 chr12 11372836 11372969 -109884561 - ID_B1 SINE B4 0 224 86 6 671 222 312 97 19 chr12 11373580 11373706 -109883824 - MIRb SINE MIR -97 171 52 6 671 192 390 27 49 chr12 11373684 11373908 -109883622 + MIRb SINE MIR 50 268 0 6 671 298 300 33 16 chr12 11374006 11374128 -109883402 - B3A SINE B2 -5 193 70 6 671 958 24 24 0 chr12 11374638 11374762 -109882768 + (TTCTC)n Simple_repeat Simple_repeat 2 128 0 6 671 540 0 0 0 chr12 11374910 11374970 -109882560 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 671 650 323 25 5 chr12 11375012 11375214 -109882316 - B4 SINE B4 -2 290 85 6 671 444 282 0 26 chr12 11375355 11375468 -109882062 - B4 SINE B4 -174 118 9 6 671 258 136 0 0 chr12 11376509 11376553 -109880977 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 671 210 71 0 0 chr12 11377335 11377363 -109880167 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 6 671 391 245 9 28 chr12 11378749 11378858 -109878672 - ORR1E LTR MaLR -3 376 270 6 671 478 240 0 10 chr12 11378935 11379032 -109878498 - ORR1E LTR MaLR -261 98 3 6 671 293 291 141 7 chr12 11380425 11380567 -109876963 + MLT1A1 LTR MaLR 1 161 -204 6 671 548 344 108 32 chr12 11380571 11380820 -109876710 + B4A SINE B4 6 273 -19 6 671 406 264 132 0 chr12 11380890 11381034 -109876496 + MLT1A1 LTR MaLR 243 405 -3 6 671 6141 32 0 1 chr12 11381762 11382474 -109875056 + L1Md_T LINE L1 5872 6582 0 6 671 847 325 33 29 chr12 11383496 11383769 -109873761 + B4A SINE B4 5 278 -14 6 671 200 304 25 0 chr12 11383782 11383861 -109873669 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 671 207 184 82 0 chr12 11384022 11384071 -109873459 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 6 671 538 306 65 61 chr12 11384230 11384477 -109873053 - B4A SINE B4 -43 249 2 6 671 993 105 35 0 chr12 11384545 11384717 -109872813 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 671 25 0 0 0 chr12 11385362 11385387 -109872143 + AT_rich Low_complexity Low_complexity 1 25 0 6 671 307 287 148 0 chr12 11385517 11385625 -109871905 - B4A SINE B4 -20 272 149 6 671 232 343 0 54 chr12 11385870 11385944 -109871586 + RMER30 DNA MER1_type 133 202 0 6 671 406 236 54 43 chr12 11386561 11386654 -109870876 + RSINE1 SINE B4 11 104 -61 6 671 214 128 0 49 chr12 11386657 11386698 -109870832 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 671 641 184 0 22 chr12 11386700 11386883 -109870647 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 671 552 15 0 0 chr12 11387636 11387701 -109869829 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 671 891 296 95 49 chr12 11388412 11388609 -109868921 - MLT1B LTR MaLR -2 388 172 6 671 2254 108 28 6 chr12 11388609 11388926 -109868604 - ORR1A3 LTR MaLR -2 324 1 6 671 891 296 95 49 chr12 11388926 11389097 -109868433 - MLT1B LTR MaLR -219 171 3 6 671 663 260 28 28 chr12 11389880 11390058 -109867472 - B4A SINE B4 0 292 115 6 671 187 183 36 24 chr12 11391410 11391494 -109866036 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 671 198 0 0 0 chr12 11391495 11391517 -109866013 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 671 288 0 0 0 chr12 11391529 11391561 -109865969 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 6 671 1400 218 154 6 chr12 11391561 11391898 -109865632 + MTD LTR MaLR 19 405 -14 6 671 645 307 0 38 chr12 11391923 11392082 -109865448 - RSINE1 SINE B4 0 165 13 6 671 343 227 129 41 chr12 11392514 11392661 -109864869 - L1ME3B LINE L1 -398 5842 5683 6 671 948 26 0 0 chr12 11393372 11393487 -109864043 + (CA)n Simple_repeat Simple_repeat 2 116 0 6 671 183 380 0 0 chr12 11395563 11395634 -109861896 - MIR SINE MIR -84 124 54 6 671 207 231 0 0 chr12 11395755 11395794 -109861736 + A-rich Low_complexity Low_complexity 1 39 0 6 671 243 146 0 0 chr12 11396726 11396767 -109860763 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 6 671 189 121 0 0 chr12 11396782 11396815 -109860715 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 671 276 331 58 29 chr12 11397371 11397508 -109860022 + MIR3 SINE MIR 59 199 -9 6 671 189 372 13 0 chr12 11397953 11398031 -109859499 - MIRm SINE MIR -121 155 77 6 671 429 20 0 0 chr12 11398201 11398251 -109859279 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 671 586 335 74 37 chr12 11401254 11401579 -109855951 + ORR1E LTR MaLR 6 342 -17 6 671 1012 251 68 72 chr12 11401580 11402002 -109855528 + MTE2a LTR MaLR 1 419 0 6 671 345 62 0 0 chr12 11402732 11402780 -109854750 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 671 806 86 0 0 chr12 11402782 11402887 -109854643 - B1_Mus1 SINE Alu -16 132 28 6 671 192 77 0 0 chr12 11402989 11403015 -109854515 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 671 357 291 13 0 chr12 11403065 11403144 -109854386 - RSINE1 SINE B4 -74 91 12 6 671 333 333 59 8 chr12 11403141 11403259 -109854271 - B1_Mur3 SINE Alu -25 124 1 6 672 327 242 119 20 chr12 11403378 11403479 -109854051 - PB1D10 SINE Alu -2 115 5 6 672 1590 133 0 13 chr12 11404446 11404675 -109852855 + URR1A DNA MER1_type 1 226 0 6 672 1586 241 14 3 chr12 11404811 11405161 -109852369 - MTD LTR MaLR -64 355 2 6 672 1752 174 111 27 chr12 11406492 11406863 -109850667 + MTC LTR MaLR 1 402 -19 6 672 1130 264 50 18 chr12 11406925 11407207 -109850323 - B4A SINE B4 -1 291 1 6 672 300 249 0 42 chr12 11407652 11407748 -109849782 + L1M3 LINE L1 4768 4869 -1277 6 672 452 262 10 0 chr12 11408556 11408659 -109848871 - B4A SINE B4 -20 272 169 6 672 303 246 72 0 chr12 11408704 11408773 -109848757 - B4A SINE B4 -214 78 5 6 672 501 284 28 21 chr12 11410055 11410199 -109847331 + ID_B1 SINE B4 70 214 -10 6 672 2339 253 66 20 chr12 11410221 11410906 -109846624 + Lx8 LINE L1 6758 7473 0 6 672 606 118 0 0 chr12 11410959 11411052 -109846478 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 6 672 1284 48 0 0 chr12 11411052 11411198 -109846332 - B1_Mus2 SINE Alu 0 147 2 6 672 244 70 47 0 chr12 11411751 11411794 -109845736 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 7 672 252 0 0 0 chr12 11412112 11412140 -109845390 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 672 2340 132 6 0 chr12 11412636 11412961 -109844569 - ORR1A2 LTR MaLR 0 327 1 7 672 3329 196 115 34 chr12 11413133 11413961 -109843569 - Lx7 LINE L1 0 7696 6802 7 672 2692 150 17 12 chr12 11414754 11415173 -109842357 - MTC LTR MaLR 0 421 1 7 672 324 342 111 66 chr12 11415370 11415793 -109841737 + L2a LINE L2 2932 3373 -53 7 672 279 311 73 16 chr12 11416325 11416449 -109841081 + MIRb SINE MIR 102 232 -36 7 672 348 315 53 34 chr12 11416843 11417109 -109840421 + L1M4 LINE L1 5126 5396 -750 7 672 914 293 69 108 chr12 11417259 11417692 -109839838 + MER47B DNA MER2_type 3 418 0 7 672 301 223 46 46 chr12 11417871 11417979 -109839551 + Lx6 LINE L1 7299 7406 -54 7 672 840 271 34 0 chr12 11418100 11418307 -109839223 + B3 SINE B2 3 216 0 7 672 1428 78 28 0 chr12 11418534 11418714 -109838816 + B2_Mm1a SINE B2 2 186 -7 7 672 690 314 60 36 chr12 11419038 11419286 -109838244 - B4A SINE B4 0 292 39 7 672 414 0 0 0 chr12 11419644 11419690 -109837840 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 672 634 197 14 43 chr12 11420213 11420351 -109837179 - ID_B1 SINE B4 0 224 91 7 672 716 0 12 0 chr12 11420503 11420587 -109836943 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 7 672 233 378 14 0 chr12 11420594 11420668 -109836862 - ID4 SINE ID -4 79 5 7 672 406 286 25 51 chr12 11420671 11420789 -109836741 - PB1D10 SINE Alu -1 116 2 7 672 411 259 45 36 chr12 11420841 11420953 -109836577 - PB1D7 SINE Alu 0 120 8 7 672 244 340 20 20 chr12 11420865 11420964 -109836566 - ID_B1 SINE B4 -48 176 78 7 672 1082 147 5 59 chr12 11421445 11421647 -109835883 + URR1A DNA MER1_type 36 226 0 7 672 689 323 35 10 chr12 11422087 11422290 -109835240 + ID_B1 SINE B4 16 223 -1 7 672 656 205 8 0 chr12 11422854 11422971 -109834559 - PB1D7 SINE Alu -1 119 2 7 672 1361 102 16 0 chr12 11423334 11423520 -109834010 + B2_Mm1a SINE B2 1 189 -4 7 672 195 333 75 15 chr12 11423854 11423921 -109833609 - MIRb SINE MIR -188 80 10 7 672 21 0 0 0 chr12 11424737 11424758 -109832772 + AT_rich Low_complexity Low_complexity 1 21 0 7 672 189 320 65 94 chr12 11424858 11424996 -109832534 + MIR SINE MIR 3 136 -132 7 672 243 312 13 25 chr12 11425966 11426045 -109831485 + B4A SINE B4 64 141 -151 7 672 221 256 167 0 chr12 11426014 11426092 -109831438 + PB1D10 SINE Alu 26 116 -1 7 672 445 229 11 7 chr12 11426251 11426355 -109831175 - B1F SINE Alu -33 116 16 7 672 340 321 94 0 chr12 11426486 11426592 -109830938 - PB1D10 SINE Alu -1 116 1 7 672 353 277 84 0 chr12 11426510 11426593 -109830937 - ID_B1 SINE B4 -54 170 81 7 672 768 296 146 92 chr12 11426993 11427604 -109829926 + Lx7 LINE L1 6817 7471 -2 7 672 221 333 104 9 chr12 11427721 11427836 -109829694 - MIR SINE MIR -74 188 63 7 672 1606 203 89 35 chr12 11428017 11428364 -109829166 + ORR1D2 LTR MaLR 5 370 0 7 672 1404 278 21 41 chr12 11429039 11429426 -109828104 - MTEa LTR MaLR 0 379 1 7 672 268 327 58 70 chr12 11429731 11429970 -109827560 + MIRb SINE MIR 30 262 0 7 672 366 280 13 0 chr12 11430461 11430536 -109826994 - RSINE1 SINE B4 -88 77 2 7 672 499 221 114 38 chr12 11430677 11430809 -109826721 - B1_Mur1 SINE Alu 0 149 8 7 672 472 261 4 1 chr12 11431777 11431877 -109825653 - B3 SINE B2 -14 202 103 7 672 423 0 0 0 chr12 11431878 11431925 -109825605 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 7 672 244 246 0 28 chr12 11431962 11432033 -109825497 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 7 672 198 321 36 0 chr12 11432290 11432346 -109825184 - MIRm SINE MIR -129 147 90 7 672 919 241 59 15 chr12 11432893 11433095 -109824435 - B3 SINE B2 -5 211 1 7 672 234 0 0 0 chr12 11433618 11433644 -109823886 + (T)n Simple_repeat Simple_repeat 1 26 0 7 672 289 345 45 0 chr12 11434794 11434904 -109822626 - PB1D10 SINE Alu 0 117 3 7 672 185 231 58 0 chr12 11434948 11435000 -109822530 + L2c LINE L2 3267 3321 -66 7 672 222 205 0 0 chr12 11435341 11435380 -109822150 - PB1 SINE Alu -5 122 84 7 672 324 120 0 0 chr12 11435406 11435456 -109822074 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 672 274 239 14 0 chr12 11435535 11435606 -109821924 - B4A SINE B4 0 292 221 7 672 3512 30 5 8 chr12 11435700 11436097 -109821433 - MTA_Mm LTR MaLR 0 396 1 7 672 931 171 0 14 chr12 11437029 11437177 -109820353 - B1_Mus1 SINE Alu -2 146 1 7 672 944 176 5 27 chr12 11437901 11438088 -109819442 + Lx7 LINE L1 7513 7695 -1 7 672 405 0 0 0 chr12 11438296 11438341 -109819189 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 672 270 0 0 0 chr12 11438341 11438370 -109819160 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 672 800 312 52 4 chr12 11438431 11438698 -109818832 - B4A SINE B4 -12 280 1 7 672 884 279 52 72 chr12 11439128 11439418 -109818112 - B4 SINE B4 -8 284 1 7 672 555 56 0 0 chr12 11441093 11441164 -109816366 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 672 21 0 0 0 chr12 11443219 11443240 -109814290 + AT_rich Low_complexity Low_complexity 1 21 0 7 672 186 43 0 0 chr12 11444685 11444708 -109812822 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 7 672 334 211 0 82 chr12 11446059 11446157 -109811373 - L1MA7 LINE L1 -34 6257 6168 7 672 479 311 61 0 chr12 11446207 11446339 -109811191 - B1F SINE Alu 0 149 10 7 672 202 305 17 0 chr12 11446951 11447010 -109810520 + (TATG)n Simple_repeat Simple_repeat 2 61 0 7 672 538 304 49 122 chr12 11447015 11447262 -109810268 - B4A SINE B4 -8 284 56 7 672 380 217 444 0 chr12 11448117 11448277 -109809253 - Lx8 LINE L1 -166 7307 7077 7 672 253 234 16 0 chr12 11448383 11448447 -109809083 - Lx9 LINE L1 -354 7290 7226 7 672 513 0 0 0 chr12 11448998 11449055 -109808475 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 7 672 1595 175 75 47 chr12 11449290 11449650 -109807880 + ORR1D1 LTR MaLR 1 370 -4 7 672 23 0 0 0 chr12 11449727 11449750 -109807780 + AT_rich Low_complexity Low_complexity 1 23 0 7 672 2103 217 12 55 chr12 11449926 11450419 -109807111 + RMER19C LTR ERVK 138 609 -2 7 672 241 341 118 22 chr12 11450590 11450725 -109806805 + B4A SINE B4 27 174 -118 7 672 25 0 0 0 chr12 11451213 11451238 -109806292 + AT_rich Low_complexity Low_complexity 1 25 0 7 672 1697 149 78 13 chr12 11451995 11452301 -109805229 - ORR1A3 LTR MaLR 0 326 1 7 672 456 62 0 0 chr12 11452304 11452368 -109805162 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 672 189 0 0 0 chr12 11452369 11452390 -109805140 + (TA)n Simple_repeat Simple_repeat 1 21 0 7 672 297 109 0 0 chr12 11452390 11452436 -109805094 + (CCTA)n Simple_repeat Simple_repeat 1 46 0 7 672 22 0 0 0 chr12 11452436 11452458 -109805072 + AT_rich Low_complexity Low_complexity 1 22 0 7 672 894 288 24 54 chr12 11452526 11452823 -109804707 - B4A SINE B4 -4 288 1 7 672 244 211 56 37 chr12 11453148 11453202 -109804328 + ZP3AR Satellite Satellite 28 82 -130 7 672 714 96 0 9 chr12 11453162 11453267 -109804263 + BC1_Mm scRNA scRNA 1 104 -48 7 672 347 176 44 0 chr12 11453420 11453488 -109804042 + B4A SINE B4 1 71 -221 7 672 281 262 12 70 chr12 11453952 11454038 -109803492 - ID SINE ID -142 82 2 7 672 385 267 161 32 chr12 11454060 11454246 -109803284 + B3 SINE B2 1 210 -6 7 672 21 89 0 0 chr12 11454403 11454459 -109803071 + AT_rich Low_complexity Low_complexity 1 56 0 7 672 189 121 0 0 chr12 11454827 11454860 -109802670 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 672 5070 143 13 12 chr12 11455079 11455918 -109801612 + Lx LINE L1 5814 6653 -1 7 672 274 212 36 36 chr12 11455918 11456001 -109801529 + RLTR11A LTR ERVK 367 449 -79 7 672 189 107 0 0 chr12 11456330 11456358 -109801172 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 7 672 610 288 80 51 chr12 11456823 11457097 -109800433 - B4A SINE B4 -6 286 5 7 672 38 0 0 0 chr12 11457145 11457183 -109800347 + AT_rich Low_complexity Low_complexity 1 38 0 7 672 2929 63 21 0 chr12 11457245 11457628 -109799902 + L1_Mus1 LINE L1 6177 6567 0 7 672 459 309 8 8 chr12 11457745 11457869 -109799661 + RSINE1 SINE B4 25 148 -17 7 672 301 326 28 7 chr12 11458507 11458652 -109798878 - Lx9 LINE L1 -155 7489 7342 7 672 694 271 127 36 chr12 11459018 11459271 -109798259 + MT2A LTR ERVL 1 276 -257 7 672 838 225 270 12 chr12 11459261 11459580 -109797950 - MTD LTR MaLR -13 406 6 7 672 351 0 0 0 chr12 11459586 11459625 -109797905 + (CCA)n Simple_repeat Simple_repeat 2 40 0 7 672 4233 91 8 8 chr12 11459770 11460371 -109797159 + L1_Mus3 LINE L1 6036 6636 -2 7 672 195 242 0 0 chr12 11461564 11461626 -109795904 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 672 833 199 27 0 chr12 11465658 11465804 -109791726 - B1_Mur4 SINE Alu 0 150 1 7 672 207 182 15 29 chr12 11466761 11466829 -109790701 + (TTA)n Simple_repeat Simple_repeat 1 67 0 7 672 357 82 0 0 chr12 11467312 11467361 -109790169 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 672 1079 108 0 0 chr12 11467361 11467528 -109790002 - L1Md_F2 LINE L1 -12 6570 6404 8 672 2036 44 0 0 chr12 11467528 11467779 -109789751 + L1Md_F2 LINE L1 6089 6339 -243 8 672 348 322 84 8 chr12 11467784 11467903 -109789627 - MER5A1 DNA MER1_type -32 134 7 8 672 793 145 0 0 chr12 11467900 11468017 -109789513 - B1_Mus2 SINE Alu -30 117 1 8 672 1094 102 6 0 chr12 11469888 11470055 -109787475 + (TTCC)n Simple_repeat Simple_repeat 3 170 0 8 672 809 104 15 0 chr12 11470057 11470191 -109787339 + (TCCC)n Simple_repeat Simple_repeat 4 139 0 8 672 310 214 0 54 chr12 11470211 11470285 -109787245 - ID_B1 SINE B4 -27 197 128 8 672 1607 181 66 90 chr12 11470408 11470785 -109786745 + ORR1C1 LTR MaLR 1 368 -10 8 672 1064 209 14 0 chr12 11471137 11471347 -109786183 - B3 SINE B2 -3 213 1 8 672 222 37 0 0 chr12 11471500 11471527 -109786003 + (T)n Simple_repeat Simple_repeat 1 27 0 8 672 334 213 74 54 chr12 11471551 11471700 -109785830 - L1MA8 LINE L1 -12 6279 6128 8 672 315 245 177 21 chr12 11472023 11472119 -109785411 - B1_Mm SINE Alu -36 111 1 8 672 217 155 35 0 chr12 11472229 11472287 -109785243 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 672 342 0 0 0 chr12 11472294 11472332 -109785198 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 672 284 299 103 38 chr12 11472545 11472595 -109784935 + L2a LINE L2 2368 2426 -993 8 672 2378 99 27 21 chr12 11472595 11472967 -109784563 - L1_Mus4 LINE L1 0 6636 6263 8 672 284 299 103 38 chr12 11472967 11473100 -109784430 + L2a LINE L2 2427 2563 -856 8 672 607 82 0 20 chr12 11473100 11473199 -109784331 + Lx LINE L1 6544 6640 -14 8 672 744 60 0 20 chr12 11473209 11473311 -109784219 + B1_Mus2 SINE Alu 46 145 -2 8 672 196 30 29 29 chr12 11473312 11473346 -109784184 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 8 672 340 73 0 18 chr12 11473371 11473427 -109784103 + L1_Mus1 LINE L1 6512 6566 -1 8 672 486 113 122 10 chr12 11473534 11473632 -109783898 + B2_Mm2 SINE B2 87 195 0 8 672 270 0 0 0 chr12 11473642 11473672 -109783858 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 8 672 335 333 168 42 chr12 11473675 11474131 -109783399 + L2a LINE L2 2634 3147 -279 8 672 237 216 9 81 chr12 11474389 11474500 -109783030 - Lx7 LINE L1 -16 7680 7578 8 672 324 111 0 0 chr12 11474500 11474554 -109782976 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 672 258 274 15 30 chr12 11474556 11474688 -109782842 + A-rich Low_complexity Low_complexity 2 131 0 8 672 1203 235 59 6 chr12 11474724 11475062 -109782468 - Lx7 LINE L1 -666 7030 6675 8 672 379 256 13 0 chr12 11475153 11475231 -109782299 - ID4_ SINE ID -3 80 2 8 672 405 169 34 30 chr12 11475353 11475593 -109781937 + (TA)n Simple_repeat Simple_repeat 1 241 0 8 672 476 219 127 34 chr12 11475705 11475823 -109781707 - RSINE1 SINE B4 -14 151 23 8 672 206 128 0 41 chr12 11476098 11476147 -109781383 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 8 672 26 0 0 0 chr12 11477018 11477044 -109780486 + AT_rich Low_complexity Low_complexity 1 26 0 8 672 247 325 12 0 chr12 11477077 11477160 -109780370 - ID_B1 SINE B4 -63 161 78 8 672 255 31 0 0 chr12 11477634 11477666 -109779864 + (TA)n Simple_repeat Simple_repeat 2 33 0 8 672 1515 159 75 4 chr12 11477768 11478069 -109779461 - IAPEY3_LTR LTR ERVK -3 364 14 8 672 4136 70 0 2 chr12 11478155 11478714 -109778816 + L1Md_F2 LINE L1 5029 5586 -297 8 672 7805 57 1 6 chr12 11478715 11479707 -109777823 + L1Md_F2 LINE L1 5588 6574 -8 8 672 565 270 34 22 chr12 11479707 11479892 -109777638 - B3A SINE B2 -5 188 1 8 672 22 0 0 0 chr12 11479909 11479931 -109777599 + AT_rich Low_complexity Low_complexity 1 22 0 8 672 804 295 72 38 chr12 11480201 11480676 -109776854 - L1MC2 LINE L1 -2 6342 5852 8 672 518 322 36 86 chr12 11482813 11483034 -109774496 + B4A SINE B4 1 210 -82 8 672 3975 148 65 4 chr12 11483625 11484627 -109772903 - Lx4B LINE L1 -682 6376 5314 8 672 11655 120 24 1 chr12 11484624 11487234 -109770296 - L1Md_F LINE L1 -2833 3050 380 8 672 3236 48 2 2 chr12 11487274 11487675 -109769855 - L1Md_F3 LINE L1 -3 6581 6181 8 672 1129 78 0 0 chr12 11487675 11487817 -109769713 - B1_Mm SINE Alu -3 144 3 8 672 443 121 12 0 chr12 11487830 11487913 -109769617 - Lx4B LINE L1 -1244 4633 4550 8 672 4377 179 34 121 chr12 11487906 11489580 -109767950 - Lx4B LINE L1 -3445 2432 844 8 672 320 366 148 0 chr12 11489892 11490034 -109767496 - RSINE1 SINE B4 0 165 3 8 672 14112 108 6 17 chr12 11490420 11493550 -109763980 - L1_Mus3 LINE L1 -14 6624 3534 8 672 207 0 0 0 chr12 11493552 11493575 -109763955 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 8 672 4005 88 0 0 chr12 11493590 11494111 -109763419 - L1_Mus1 LINE L1 0 6567 6047 8 672 2026 123 29 3 chr12 11494112 11494462 -109763068 + L1_Mm LINE L1 4940 5298 -585 8 672 7776 75 13 2 chr12 11494464 11495610 -109761920 + L1Md_F LINE L1 183 1344 -5380 8 672 23097 61 7 3 chr12 11495623 11498904 -109758626 - L1Md_A LINE L1 -1440 4443 1146 8 672 7812 32 3 0 chr12 11499031 11500000 -109757530 - L1Md_T LINE L1 -3 6579 5608 8 672 34308 45 4 15 chr12 11500000 11505161 -109752369 - L1Md_F LINE L1 -276 5607 511 1 672 3083 107 18 3 chr12 11505153 11505746 -109751784 - L1Md_F LINE L1 -5419 1197 625 2 672 1218 117 0 0 chr12 11505747 11505935 -109751595 + L1_Mm LINE L1 4863 5050 -833 3 672 734 243 7 20 chr12 11506250 11506401 -109751129 - B1_Mur3 SINE Alu 0 149 1 4 672 228 253 38 12 chr12 11507299 11507379 -109750151 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 5 672 868 328 59 0 chr12 11507386 11507639 -109749891 - B4 SINE B4 -20 272 5 6 672 274 170 0 0 chr12 11507931 11507984 -109749546 - MT2A LTR ERVL 0 533 481 7 672 396 169 0 0 chr12 11507994 11508071 -109749459 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 8 672 1138 206 72 102 chr12 11508091 11508513 -109749017 - MT2A LTR ERVL -63 538 1 9 672 22 0 0 0 chr12 11508736 11508758 -109748772 + AT_rich Low_complexity Low_complexity 1 22 0 1 672 194 283 33 0 chr12 11508806 11508866 -109748664 - L2 LINE L2 -2417 1002 941 1 672 306 73 0 0 chr12 11509809 11509850 -109747680 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 672 257 299 60 54 chr12 11510759 11510925 -109746605 + L2a LINE L2 2552 2718 -701 1 672 1082 192 276 12 chr12 11510943 11511265 -109746265 + MTD LTR MaLR 10 416 -3 1 672 302 293 168 21 chr12 11511325 11511468 -109746062 + L2a LINE L2 3263 3426 0 1 672 1033 256 81 11 chr12 11512284 11512557 -109744973 - B4A SINE B4 0 292 1 1 672 889 264 5 10 chr12 11512825 11513024 -109744506 - RLTR33 LTR ERVK -2 676 479 1 672 4285 28 0 2 chr12 11513024 11513518 -109744012 - MT2_Mm LTR ERVL 0 493 1 1 672 302 0 0 0 chr12 11513518 11513556 -109743974 - MERVL-int LTR ERVL 0 5485 5448 1 672 371 111 26 53 chr12 11513556 11513632 -109743898 - ORR1A3-int LTR MaLR -1323 640 567 1 672 45601 16 0 0 chr12 11513632 11518992 -109738538 - MERVL-int LTR ERVL -114 5371 12 1 672 2346 137 146 2 chr12 11518992 11519003 -109738527 - RLTR33 LTR ERVK -183 495 485 1 672 4285 28 0 2 chr12 11519003 11519497 -109738033 - MT2_Mm LTR ERVL 0 493 1 1 672 2346 137 146 2 chr12 11519497 11519918 -109737612 - RLTR33 LTR ERVK -194 484 2 1 672 5684 72 4 0 chr12 11520283 11521016 -109736514 + L1_Mus2 LINE L1 5830 6565 -1 2 672 22 35 0 0 chr12 11521018 11521047 -109736483 + AT_rich Low_complexity Low_complexity 1 29 0 2 672 531 96 0 0 chr12 11521111 11521194 -109736336 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 672 190 359 26 0 chr12 11521907 11521985 -109735545 + MIRb SINE MIR 104 183 -85 2 672 492 362 108 50 chr12 11522121 11522546 -109734984 + LTR16E2 LTR ERVL 23 490 -78 2 672 1020 111 0 0 chr12 11522558 11522738 -109734792 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 672 213 283 0 0 chr12 11522739 11522785 -109734745 + polypyrimidine Low_complexity Low_complexity 3 48 0 2 672 442 139 28 0 chr12 11522788 11522860 -109734670 - B1_Mur3 SINE Alu -8 141 68 2 672 252 260 12 72 chr12 11522860 11522871 -109734659 - ID_B1 SINE B4 -8 216 139 2 672 235 274 0 19 chr12 11523046 11523098 -109734432 - B1_Mur4 SINE Alu -99 51 1 2 672 1052 90 0 0 chr12 11523935 11524069 -109733461 + B1_Mus1 SINE Alu 1 134 -14 3 672 209 232 36 0 chr12 11524958 11525014 -109732516 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 3 672 726 298 154 8 chr12 11525327 11525709 -109731821 + L1MB8 LINE L1 5389 5826 -352 3 672 26 30 0 0 chr12 11525727 11525760 -109731770 + AT_rich Low_complexity Low_complexity 1 33 0 3 672 2429 60 3 6 chr12 11525760 11526077 -109731453 - L1_Mus1 LINE L1 0 6567 6252 3 672 3281 50 0 0 chr12 11526077 11526499 -109731031 + L1_Mus1 LINE L1 5641 6062 -505 3 672 517 339 148 20 chr12 11526536 11526780 -109730750 + B4A SINE B4 1 275 -17 3 672 645 93 0 0 chr12 11527546 11527653 -109729877 + (TATG)n Simple_repeat Simple_repeat 2 108 0 3 672 28 29 0 0 chr12 11527803 11527838 -109729692 + AT_rich Low_complexity Low_complexity 1 35 0 3 672 323 250 35 121 chr12 11527883 11528056 -109729474 - YREP_Mm Unknown Unknown -1473 339 182 3 672 462 237 14 145 chr12 11527919 11528057 -109729473 + PB1 SINE Alu 6 125 -2 3 672 245 338 38 0 chr12 11528058 11528138 -109729392 + ID SINE ID 1 83 -141 4 672 623 167 10 0 chr12 11528435 11528537 -109728993 - B1_Mus2 SINE Alu -9 138 36 4 672 587 189 112 52 chr12 11528537 11528671 -109728859 + B1_Mur3 SINE Alu 1 142 -7 4 672 243 0 0 0 chr12 11528673 11528700 -109728830 + (A)n Simple_repeat Simple_repeat 1 27 0 4 672 3570 240 79 26 chr12 11529370 11530280 -109727250 - Lx5 LINE L1 -5 7045 6088 4 672 6883 168 38 4 chr12 11530304 11531839 -109725691 - Lx5 LINE L1 -1043 6007 4401 4 10 17515 67 272 8 chr12 11531831 11535163 -109722367 - L1Md_F2 LINE L1 0 6582 1961 4 673 225 0 0 0 chr12 11535163 11535188 -109722342 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 673 17515 151 175 15 chr12 11535188 11537221 -109720309 - L1Md_F2 LINE L1 -3923 1960 66 4 673 1716 139 37 25 chr12 11537227 11537551 -109719979 - Lx5 LINE L1 -1459 4418 4091 4 673 255 164 18 18 chr12 11537542 11537598 -109719932 - Lx5 LINE L1 -2361 3516 3461 4 673 1007 93 36 0 chr12 11537614 11537754 -109719776 - B1_Mus2 SINE Alu 0 147 3 4 673 3778 163 50 8 chr12 11537754 11538602 -109718928 - Lx5 LINE L1 -2401 3476 2594 4 673 3070 111 21 2 chr12 11538597 11539112 -109718418 - L1_Mm LINE L1 -1511 4372 3848 4 673 21747 106 54 44 chr12 11539134 11541974 -109715556 - L1Md_F2 LINE L1 -9 6573 3459 4 673 498 33 0 0 chr12 11541974 11542034 -109715496 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 673 21747 124 81 64 chr12 11542034 11542063 -109715467 - L1Md_F2 LINE L1 -2425 3458 3432 4 673 334 212 19 135 chr12 11542063 11542270 -109715260 - RMER17C LTR ERVK -137 273 91 5 673 21747 124 81 64 chr12 11542270 11542529 -109715001 - L1Md_F2 LINE L1 -2425 3431 3183 4 673 247 25 50 0 chr12 11542529 11542569 -109714961 + (CAA)n Simple_repeat Simple_repeat 1 42 0 5 673 21747 124 81 64 chr12 11542569 11543648 -109713882 - L1Md_F2 LINE L1 -2701 3182 2088 4 673 261 0 0 0 chr12 11543648 11543677 -109713853 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 5 673 21747 160 52 79 chr12 11543677 11545230 -109712300 - L1Md_F2 LINE L1 -3796 2087 609 4 673 894 281 65 18 chr12 11546986 11547261 -109710269 - B4A SINE B4 -2 290 3 5 673 5693 197 140 4 chr12 11547653 11549132 -109708398 - Lx4B LINE L1 0 7058 5350 5 673 34862 35 11 11 chr12 11549136 11550786 -109706744 - L1Md_T LINE L1 0 6582 4914 5 673 230 183 46 77 chr12 11550786 11550851 -109706679 + RMER20A LTR ERVK 186 248 -268 5 673 34862 35 11 11 chr12 11550851 11554516 -109703014 - L1Md_T LINE L1 0 4913 1203 5 673 9161 7 0 0 chr12 11554482 11555560 -109701970 - L1Md_Gf LINE L1 -5380 1142 65 5 673 2001 130 10 45 chr12 11555558 11555637 -109701893 - Lx4B LINE L1 -515 5362 5297 5 673 1136 69 28 0 chr12 11555637 11555781 -109701749 - B1_Mus1 SINE Alu 0 148 1 5 673 2001 130 10 45 chr12 11555781 11556097 -109701433 - Lx4B LINE L1 -581 5296 4981 5 673 404 327 57 43 chr12 11556403 11556614 -109700916 - B3A SINE B2 0 216 3 6 673 830 233 93 0 chr12 11557153 11557346 -109700184 + MTE2b LTR MaLR 169 379 0 6 673 23 33 0 0 chr12 11557969 11557999 -109699531 + AT_rich Low_complexity Low_complexity 1 30 0 6 673 2580 197 34 60 chr12 11559099 11559652 -109697878 + RMER15 LTR ERVL 3 532 -43 6 673 486 49 0 0 chr12 11559652 11559713 -109697817 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 673 2580 197 34 60 chr12 11559713 11559747 -109697783 + RMER15 LTR ERVL 533 574 -1 6 673 535 348 71 32 chr12 11559769 11560021 -109697509 - B4 SINE B4 -6 286 25 6 673 383 302 40 64 chr12 11560206 11560379 -109697151 - MLT1D LTR MaLR -292 213 45 6 673 1132 304 84 31 chr12 11560467 11560746 -109696784 - MER54A LTR ERVL -7 894 602 6 673 3299 66 31 0 chr12 11560746 11561169 -109696361 - RLTR10C LTR ERVK 0 436 1 6 673 1132 318 87 37 chr12 11561169 11561380 -109696150 - MER54A LTR ERVL -300 601 305 6 673 28 0 0 0 chr12 11561441 11561469 -109696061 + AT_rich Low_complexity Low_complexity 1 28 0 6 673 32961 77 5 7 chr12 11561558 11567552 -109689978 - L1Md_F2 LINE L1 -12 6573 610 7 673 618 283 105 71 chr12 11567560 11567826 -109689704 - MER54A LTR ERVL -369 275 1 6 673 21 57 0 0 chr12 11567884 11567919 -109689611 + AT_rich Low_complexity Low_complexity 1 35 0 7 673 391 250 0 0 chr12 11568813 11568881 -109688649 - ID4 SINE ID -6 77 10 7 673 243 0 0 0 chr12 11568898 11568925 -109688605 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 7 673 588 84 0 0 chr12 11568925 11569008 -109688522 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 7 673 329 308 128 40 chr12 11569014 11569163 -109688367 - B3A SINE B2 -35 163 2 7 673 21 89 0 0 chr12 11571116 11571172 -109686358 + AT_rich Low_complexity Low_complexity 1 56 0 7 673 228 252 54 45 chr12 11571278 11571390 -109686140 - L1M5 LINE L1 -2230 3916 3804 7 673 215 244 0 0 chr12 11571420 11571461 -109686069 - B4A SINE B4 -207 85 45 7 673 382 326 131 46 chr12 11571516 11571889 -109685641 - L1MD LINE L1 -2313 3833 3429 7 673 323 297 119 35 chr12 11571957 11572243 -109685287 + L1MEf LINE L1 1200 1509 -4691 8 673 21 0 0 0 chr12 11572412 11572433 -109685097 + AT_rich Low_complexity Low_complexity 1 21 0 8 673 378 0 0 0 chr12 11572482 11572524 -109685006 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 8 673 209 33 33 0 chr12 11572528 11572558 -109684972 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 8 673 331 327 83 111 chr12 11572588 11572877 -109684653 - B4 SINE B4 -1 291 11 8 673 873 272 132 29 chr12 11573234 11573514 -109684016 + MTD LTR MaLR 1 309 -110 8 673 275 232 118 100 chr12 11574245 11574265 -109683265 - B4A SINE B4 -68 224 205 8 673 2395 143 57 8 chr12 11574265 11574666 -109682864 + MTC LTR MaLR 1 421 0 8 673 275 232 118 100 chr12 11574666 11574755 -109682775 - B4A SINE B4 -88 204 113 8 673 2311 183 61 16 chr12 11575169 11575658 -109681872 - RMER1C Other Other -12 1330 820 8 673 2045 100 3 3 chr12 11577600 11577892 -109679638 + Lx LINE L1 6354 6645 -9 8 673 1010 104 0 0 chr12 11578598 11578733 -109678797 + B1_Mus1 SINE Alu 3 137 -11 9 673 395 49 33 0 chr12 11578733 11578794 -109678736 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 9 673 240 404 51 0 chr12 11579998 11580154 -109677376 - MLT1H1 LTR MaLR -366 189 26 9 673 320 270 0 103 chr12 11581033 11581227 -109676303 + (GGGTG)n Simple_repeat Simple_repeat 3 176 0 9 673 345 18 17 50 chr12 11581337 11581397 -109676133 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 9 673 1521 247 45 26 chr12 11581406 11581839 -109675691 + Lx5 LINE L1 6071 6737 -723 9 673 359 21 0 20 chr12 11581839 11581888 -109675642 + (CAAAA)n Simple_repeat Simple_repeat 1 48 0 9 673 1772 277 32 62 chr12 11581888 11582459 -109675071 + Lx5 LINE L1 6455 7324 -136 9 673 1530 80 97 9 chr12 11582459 11582687 -109674843 - L1Md_F2 LINE L1 0 6582 6335 9 673 1772 275 24 60 chr12 11582687 11582804 -109674726 + Lx5 LINE L1 6943 7050 0 9 673 61 27 0 0 chr12 11582920 11582995 -109674535 + AT_rich Low_complexity Low_complexity 1 75 0 9 673 30 0 0 0 chr12 11583013 11583043 -109674487 + AT_rich Low_complexity Low_complexity 1 30 0 9 673 24 32 0 0 chr12 11583176 11583207 -109674323 + AT_rich Low_complexity Low_complexity 1 31 0 1 673 3392 39 50 2 chr12 11583761 11583971 -109673559 + RLTR10C LTR ERVK 1 222 -214 1 673 252 0 0 0 chr12 11583971 11583999 -109673531 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 673 3392 39 50 2 chr12 11583999 11584204 -109673326 + RLTR10C LTR ERVK 223 434 -2 1 673 311 240 87 39 chr12 11585229 11585333 -109672197 - Tigger7 DNA MER2_type 0 2491 2383 1 673 245 261 136 0 chr12 11585308 11585396 -109672134 - Tigger7 DNA MER2_type -1431 1060 961 1 673 369 247 0 13 chr12 11585401 11585479 -109672051 - Tigger7 DNA MER2_type -2154 337 261 1 673 906 254 30 0 chr12 11585495 11585692 -109671838 - Tigger7 DNA MER2_type -2282 209 7 1 673 535 286 93 23 chr12 11585776 11585991 -109671539 - B4A SINE B4 -60 232 3 1 673 1170 264 82 17 chr12 11586205 11586667 -109670863 - Lx8 LINE L1 0 7473 6982 1 673 291 93 0 0 chr12 11586681 11586724 -109670806 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 673 1781 171 79 61 chr12 11586736 11587115 -109670415 - ORR1B1 LTR MaLR -8 386 1 1 673 833 297 18 0 chr12 11587115 11587375 -109670155 - Lx8 LINE L1 -613 7031 6730 1 673 269 292 68 42 chr12 11587920 11588038 -109669492 - Lx6 LINE L1 -805 6655 6535 1 673 813 278 82 93 chr12 11588498 11588671 -109668859 - ORR1E LTR MaLR -10 349 186 1 673 674 44 11 0 chr12 11588671 11588761 -109668769 + (GA)n Simple_repeat Simple_repeat 1 91 0 1 673 813 278 82 93 chr12 11588761 11588940 -109668590 - ORR1E LTR MaLR -174 185 1 1 673 405 0 0 0 chr12 11589127 11589172 -109668358 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 673 640 272 60 148 chr12 11589189 11589375 -109668155 - B4 SINE B4 -60 232 64 1 673 1130 75 0 7 chr12 11589375 11589522 -109668008 - B1_Mus2 SINE Alu 0 147 2 1 673 640 272 60 148 chr12 11589522 11589585 -109667945 - B4 SINE B4 -229 63 5 1 673 6206 51 1 12 chr12 11590979 11591186 -109666344 - L1_Mus1 LINE L1 0 6567 6369 1 673 4220 46 2 2 chr12 11591186 11591689 -109665841 - RLTR1C LTR ERV1 0 503 1 1 673 6206 51 1 12 chr12 11591689 11592255 -109665275 - L1_Mus1 LINE L1 -199 6368 5802 1 673 3409 81 2 0 chr12 11592255 11592726 -109664804 + L1_Mus1 LINE L1 5332 5803 -80 1 673 1466 147 68 19 chr12 11593292 11593555 -109663975 + ORR1A4 LTR MaLR 46 321 -8 1 673 370 267 49 6 chr12 11593558 11593720 -109663810 + (TCTA)n Simple_repeat Simple_repeat 1 169 0 1 673 3123 59 47 5 chr12 11594068 11594477 -109663053 + L1Md_F2 LINE L1 6141 6566 -16 1 673 22 0 0 0 chr12 11594709 11594731 -109662799 + AT_rich Low_complexity Low_complexity 1 22 0 1 673 3530 15 2 0 chr12 11595869 11596264 -109661266 + MTA_Mm LTR MaLR 1 396 0 1 673 546 288 8 16 chr12 11597295 11597422 -109660108 - RSINE1 SINE B4 0 165 40 1 673 262 290 115 39 chr12 11597587 11597691 -109659839 - PB1D9 SINE Alu -1 119 8 1 673 247 326 186 36 chr12 11598016 11598210 -109659320 - L2 LINE L2 -338 3081 2859 1 673 908 230 33 5 chr12 11598551 11598761 -109658769 + B3 SINE B2 1 216 0 1 673 926 99 0 0 chr12 11598830 11598961 -109658569 + L1_Mus2 LINE L1 6435 6565 -1 1 673 31631 76 2 4 chr12 11598971 11604217 -109653313 + L1Md_F2 LINE L1 398 5586 -297 1 673 8216 38 2 1 chr12 11604217 11605210 -109652320 + L1Md_F2 LINE L1 5587 6580 -2 1 673 559 334 82 131 chr12 11605250 11606612 -109650918 - L2 LINE L2 -1155 2264 970 1 673 619 360 90 5 chr12 11606677 11607079 -109650451 + Lx8 LINE L1 6942 7377 -96 1 673 893 81 0 0 chr12 11607162 11607285 -109650245 - Lx4B LINE L1 -1192 5866 5744 1 673 645 365 89 11 chr12 11607300 11607460 -109650070 - L2 LINE L2 -2758 661 487 1 673 234 0 0 0 chr12 11607460 11607486 -109650044 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 673 645 365 89 11 chr12 11607486 11607763 -109649767 - L2 LINE L2 -2933 486 190 1 673 276 130 0 0 chr12 11608074 11608120 -109649410 + (GGAGA)n Simple_repeat Simple_repeat 5 50 0 1 673 191 347 131 8 chr12 11609532 11609654 -109647876 + MIRb SINE MIR 116 252 -16 1 673 275 289 65 37 chr12 11609764 11609872 -109647658 + ORR1E LTR MaLR 249 359 0 1 673 210 174 0 0 chr12 11610630 11610676 -109646854 + T-rich Low_complexity Low_complexity 2 47 0 1 673 345 358 167 26 chr12 11611274 11611538 -109645992 - LTR16B2 LTR ERVL -4 458 158 1 673 24 0 0 0 chr12 11611541 11611565 -109645965 + AT_rich Low_complexity Low_complexity 1 24 0 1 673 2346 140 55 0 chr12 11611580 11611980 -109645550 - Lx2A LINE L1 0 7008 6587 1 673 810 202 67 57 chr12 11612475 11612669 -109644861 + B3 SINE B2 16 211 -5 1 673 25 31 0 0 chr12 11612669 11612701 -109644829 + AT_rich Low_complexity Low_complexity 1 32 0 1 673 447 19 0 0 chr12 11612769 11612821 -109644709 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 673 799 329 32 18 chr12 11612857 11613136 -109644394 - B4A SINE B4 -8 284 2 1 673 366 210 224 48 chr12 11613312 11613477 -109644053 + B2_Mm2 SINE B2 2 195 0 1 673 1170 62 0 0 chr12 11613597 11613742 -109643788 + B1_Mus2 SINE Alu 3 147 0 1 673 1064 215 27 0 chr12 11613956 11614175 -109643355 + URR1B DNA MER1_type 1 225 0 1 673 350 328 32 0 chr12 11614477 11614602 -109642928 - Lx9 LINE L1 -1140 6504 6376 1 673 515 258 96 5 chr12 11614797 11614984 -109642546 + B3 SINE B2 4 207 -9 1 673 27 29 0 0 chr12 11615524 11615558 -109641972 + AT_rich Low_complexity Low_complexity 1 34 0 1 673 2843 273 109 61 chr12 11615920 11617173 -109640357 - Lx9 LINE L1 -1 7643 6330 1 673 471 250 148 0 chr12 11617213 11617341 -109640189 + B1_Mur2 SINE Alu 3 149 0 1 673 270 0 0 0 chr12 11617382 11617412 -109640118 + (CAT)n Simple_repeat Simple_repeat 2 31 0 1 673 1294 265 30 39 chr12 11617643 11617977 -109639553 + MTE2b LTR MaLR 3 333 -46 1 673 375 354 18 30 chr12 11618044 11618210 -109639320 - MLT1F2 LTR MaLR -396 164 1 1 673 480 35 0 0 chr12 11618965 11619023 -109638507 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1 673 234 62 0 0 chr12 11619023 11619054 -109638476 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 673 618 14 0 0 chr12 11619054 11619124 -109638406 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 673 266 271 129 0 chr12 11619332 11619417 -109638113 - PB1D10 SINE Alu -19 98 3 1 673 1201 194 32 8 chr12 11619443 11619692 -109637838 - Lx5 LINE L1 -396 6654 6400 1 673 1853 196 33 8 chr12 11619694 11620054 -109637476 + Lx5 LINE L1 6635 7003 -47 1 673 486 0 0 0 chr12 11620105 11620159 -109637371 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 673 363 327 91 20 chr12 11621125 11621577 -109635953 - L1MC LINE L1 -2080 5802 5319 1 673 1032 296 69 19 chr12 11622069 11622386 -109635144 + MTE2a LTR MaLR 1 333 -46 1 673 1209 114 81 5 chr12 11622496 11622707 -109634823 - Lx LINE L1 0 6654 6428 1 673 16368 143 38 28 chr12 11622758 11627070 -109630460 - L1VL4 LINE L1 -1185 4698 356 1 673 1111 159 59 5 chr12 11630797 11630999 -109626531 - URR1B DNA MER1_type 0 225 13 1 673 211 271 0 0 chr12 11631574 11631622 -109625908 - PB1D10 SINE Alu -34 83 36 1 673 428 324 77 77 chr12 11632331 11632605 -109624925 - B4A SINE B4 -16 276 3 1 673 228 130 0 0 chr12 11634696 11634742 -109622788 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 1 673 2521 159 17 23 chr12 11634809 11634941 -109622589 - RMER1B Other Other -6 1060 933 1 673 291 71 0 0 chr12 11634941 11634983 -109622547 + (CAAAC)n Simple_repeat Simple_repeat 3 44 0 1 673 2521 159 17 23 chr12 11634983 11635332 -109622198 - RMER1B Other Other -134 932 582 1 673 3311 116 8 0 chr12 11637219 11637695 -109619835 + Lx LINE L1 6171 6650 -4 1 673 241 347 65 28 chr12 11639794 11640018 -109617512 + MIRc SINE MIR 3 235 -33 1 673 827 102 0 8 chr12 11641689 11641818 -109615712 + (TTCC)n Simple_repeat Simple_repeat 4 131 0 1 673 671 307 11 6 chr12 11641849 11642029 -109615501 + B3A SINE B2 1 181 -17 1 673 189 74 0 0 chr12 11642040 11642067 -109615463 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 673 285 381 28 92 chr12 11642071 11642288 -109615242 - MLT1A0 LTR MaLR -61 304 102 1 673 234 338 0 56 chr12 11642665 11642737 -109614793 - ID4_ SINE ID -14 69 2 1 673 273 321 0 12 chr12 11645139 11645221 -109612309 - PB1D10 SINE Alu -9 108 28 1 673 34 0 0 0 chr12 11646029 11646063 -109611467 + AT_rich Low_complexity Low_complexity 1 34 0 1 673 12451 89 5 9 chr12 11646063 11648594 -109608936 - L1Md_F2 LINE L1 -21 6561 4045 1 673 12559 22 0 1 chr12 11648574 11650104 -109607426 + L1Md_A LINE L1 4058 5586 -297 1 673 8428 34 0 0 chr12 11650104 11651099 -109606431 + L1Md_A LINE L1 5587 6581 -1 1 673 18247 96 13 20 chr12 11651099 11654799 -109602731 - L1Md_F2 LINE L1 -1812 4071 404 1 673 264 130 0 0 chr12 11654823 11654869 -109602661 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 1 673 695 222 0 0 chr12 11654997 11655123 -109602407 - RSINE1 SINE B4 -37 128 3 1 673 1121 306 59 18 chr12 11655400 11655784 -109601746 + MTD LTR MaLR 10 403 -16 1 673 440 288 140 4 chr12 11655905 11656177 -109601353 - L1ME3B LINE L1 -268 5972 5664 1 673 381 270 54 7 chr12 11656241 11656390 -109601140 + RNERVK23-int LTR ERVK 7567 7722 -495 1 673 314 361 22 13 chr12 11656390 11656467 -109601063 + MuRRS4-int LTR ERV1 4706 4933 -130 1 673 2444 78 134 0 chr12 11656564 11656960 -109600570 + RLTR47_MM LTR ERV1 1 449 -83 1 673 273 293 0 0 chr12 11656961 11657019 -109600511 + MER5A DNA MER1_type 61 118 -71 1 673 226 266 0 0 chr12 11657147 11657211 -109600319 - L1ME3B LINE L1 -548 5625 5562 1 673 315 0 0 0 chr12 11658594 11658629 -109598901 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 673 888 10 0 0 chr12 11658892 11658993 -109598537 + (TTC)n Simple_repeat Simple_repeat 2 102 0 1 673 18967 62 82 9 chr12 11659117 11664876 -109592654 - L1Md_A LINE L1 0 6582 1 1 674 852 254 19 14 chr12 11665621 11665829 -109591701 + B3 SINE B2 2 210 -6 1 674 23 0 0 0 chr12 11666377 11666400 -109591130 + AT_rich Low_complexity Low_complexity 1 23 0 1 674 555 306 57 57 chr12 11666574 11666785 -109590745 - B4A SINE B4 0 292 82 1 674 3318 41 5 0 chr12 11666822 11667216 -109590314 + MTA_Mm LTR MaLR 1 396 0 1 674 8372 51 28 2 chr12 11667216 11668286 -109589244 + MTA_Mm-int LTR MaLR 1 1098 0 1 674 3024 75 12 2 chr12 11668286 11668689 -109588841 + MTA_Mm LTR MaLR 1 407 0 1 674 841 164 9 0 chr12 11668735 11668948 -109588582 + CT-rich Low_complexity Low_complexity 1 215 0 1 674 5228 217 13 10 chr12 11668948 11670013 -109587517 - Lx5 LINE L1 0 7050 5983 1 674 791 198 150 0 chr12 11670014 11670104 -109587426 + RLTR20A LTR ERVK 350 439 -102 1 674 231 36 0 0 chr12 11670104 11670132 -109587398 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 674 791 198 150 0 chr12 11670132 11670208 -109587322 + RLTR20A LTR ERVK 440 540 -1 1 674 3706 167 24 9 chr12 11670209 11671060 -109586470 - Lx5 LINE L1 -1064 5986 5116 1 674 2679 31 65 0 chr12 11671060 11671383 -109586147 + ORR1A1 LTR MaLR 3 346 0 1 674 3706 170 30 14 chr12 11671383 11671407 -109586123 - Lx5 LINE L1 -762 5115 5092 1 674 2714 136 66 2 chr12 11671407 11671849 -109585681 + MT2B LTR ERVL 132 601 0 1 674 2511 139 51 4 chr12 11671849 11672319 -109585211 - Lx5 LINE L1 -1581 4296 3805 1 674 463 143 0 0 chr12 11673926 11674003 -109583527 - Lx5 LINE L1 -2061 3816 3740 1 674 6149 74 7 0 chr12 11673997 11674847 -109582683 - L1_Mus1 LINE L1 0 6567 5712 2 674 2089 179 81 16 chr12 11674847 11675351 -109582179 - L1Md_F LINE L1 -5662 857 321 2 674 6366 141 23 14 chr12 11675398 11676604 -109580926 - Lx5 LINE L1 -2126 3751 2535 1 674 277 318 112 11 chr12 11676604 11676693 -109580837 - B4A SINE B4 -192 100 3 2 674 366 344 65 26 chr12 11676932 11677087 -109580443 - B3A SINE B2 -30 168 8 2 674 347 281 209 34 chr12 11678535 11678918 -109578612 + L3 LINE CR1 3548 3997 -492 2 674 576 313 26 44 chr12 11679513 11679740 -109577790 - ID_B1 SINE B4 0 224 2 2 674 875 237 31 15 chr12 11680319 11680555 -109576975 + MLT2B4 LTR ERVL 4 245 -275 2 674 1317 191 48 58 chr12 11680713 11681024 -109576506 - RLTR28 LTR ERVL -11 513 206 2 674 574 342 76 40 chr12 11681327 11681631 -109575899 + ORR1E LTR MaLR 1 315 -44 2 674 405 261 8 17 chr12 11681681 11681798 -109575732 - MLT1A1 LTR MaLR -2 406 291 2 674 238 250 71 0 chr12 11681818 11681874 -109575656 - MLT1A1 LTR MaLR -204 204 145 2 674 216 0 0 0 chr12 11681874 11681898 -109575632 + (T)n Simple_repeat Simple_repeat 1 24 0 2 674 195 283 152 0 chr12 11682440 11682532 -109574998 - MER5B DNA MER1_type -1 177 72 2 674 252 0 0 0 chr12 11684370 11684398 -109573132 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 674 249 33 0 0 chr12 11684398 11684428 -109573102 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 674 292 344 49 42 chr12 11684782 11685046 -109572484 + Lx8 LINE L1 7092 7357 -116 2 674 375 289 67 0 chr12 11685363 11685557 -109571973 - Lx7 LINE L1 -16 7680 7474 2 674 251 326 84 7 chr12 11685572 11685714 -109571816 + MIR SINE MIR 73 225 -37 2 674 249 135 0 0 chr12 11685757 11685809 -109571721 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 674 25 31 0 0 chr12 11685812 11685844 -109571686 + AT_rich Low_complexity Low_complexity 1 32 0 2 674 1138 297 24 100 chr12 11686325 11686706 -109570824 + ORR1E LTR MaLR 8 359 0 2 674 787 251 133 138 chr12 11687597 11687695 -109569835 + RLTR18 LTR ERVK 1 92 -524 2 674 192 77 0 0 chr12 11687695 11687721 -109569809 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 674 787 251 133 138 chr12 11687721 11688237 -109569293 + RLTR18 LTR ERVK 93 612 -4 2 674 198 200 0 0 chr12 11689829 11689864 -109567666 - L2 LINE L2 -563 2856 2822 2 674 1733 166 55 0 chr12 11689967 11690292 -109567238 - Lx LINE L1 -14 6983 6641 2 674 23 0 0 0 chr12 11690630 11690653 -109566877 + AT_rich Low_complexity Low_complexity 1 23 0 2 674 247 275 0 0 chr12 11691428 11691497 -109566033 + (CAG)n Simple_repeat Simple_repeat 3 71 0 2 674 2473 184 22 0 chr12 11692241 11692687 -109564843 - Lx LINE L1 -10 6644 6189 2 674 230 407 0 0 chr12 11693078 11693164 -109564366 - MLT1H1 LTR MaLR -345 210 125 2 674 976 291 4 28 chr12 11695562 11695810 -109561720 - 7SK RNA RNA -89 242 1 2 674 279 328 45 116 chr12 11695811 11695966 -109561564 - B1F1 SINE Alu -3 146 3 2 674 364 289 49 118 chr12 11695966 11696058 -109561472 - ID SINE ID -141 83 6 2 674 328 371 13 19 chr12 11696093 11696247 -109561283 + MTEa LTR MaLR 1 153 -226 2 674 268 245 0 19 chr12 11696366 11696420 -109561110 + MT2A LTR ERVL 321 373 -160 2 674 203 167 0 45 chr12 11696460 11696504 -109561026 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2 674 207 207 44 44 chr12 11696603 11696694 -109560836 + (TCCTG)n Simple_repeat Simple_repeat 1 91 0 2 674 543 16 0 0 chr12 11697071 11697135 -109560395 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 674 1129 57 70 0 chr12 11697570 11697727 -109559803 - L1Md_F3 LINE L1 -14 6570 6403 2 674 1316 276 59 41 chr12 11698815 11699356 -109558174 - Lx8 LINE L1 0 7473 6923 2 674 245 268 14 0 chr12 11699400 11699471 -109558059 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 2 674 762 69 0 0 chr12 11699567 11699668 -109557862 + (TA)n Simple_repeat Simple_repeat 1 101 0 2 674 404 305 31 46 chr12 11699869 11700065 -109557465 - MIRb SINE MIR 0 268 76 2 674 185 305 97 71 chr12 11700140 11700253 -109557277 - L3 LINE CR1 -87 4402 4287 2 674 182 344 138 11 chr12 11700660 11700754 -109556776 - MIRm SINE MIR -146 130 25 2 674 2012 180 40 3 chr12 11702320 11702666 -109554864 + ORR1B2 LTR MaLR 1 359 -8 2 674 7210 87 16 2 chr12 11703108 11704078 -109553452 + RLTR13C1 LTR ERVK 1 983 0 2 674 33083 78 6 14 chr12 11704335 11710682 -109546848 - L1Md_F2 LINE L1 -1 6581 290 2 674 198 103 0 0 chr12 11710844 11710873 -109546657 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 674 890 284 115 41 chr12 11713802 11714140 -109543390 - MTD LTR MaLR -51 368 6 2 674 274 343 20 0 chr12 11714613 11714712 -109542818 + PB1D10 SINE Alu 1 101 -16 2 674 1273 322 55 16 chr12 11715132 11715565 -109541965 + MLT2B1 LTR ERVL 1 450 -70 2 674 413 339 47 0 chr12 11715678 11715849 -109541681 - L3 LINE CR1 -805 3684 3506 2 674 3631 42 0 0 chr12 11716375 11716807 -109540723 + L1Md_F2 LINE L1 6149 6580 -2 2 674 8130 77 24 0 chr12 11717901 11719745 -109537785 - L1_Mus1 LINE L1 0 6567 4679 2 674 286 195 126 8 chr12 11722208 11722327 -109535203 - Lx7 LINE L1 -1 7695 7563 2 674 657 93 0 0 chr12 11722331 11722438 -109535092 + (CA)n Simple_repeat Simple_repeat 2 108 0 2 674 576 0 0 0 chr12 11722438 11722501 -109535029 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 674 612 257 103 7 chr12 11722519 11722664 -109534866 + B4 SINE B4 134 292 0 2 674 186 220 20 20 chr12 11722895 11722946 -109534584 - MIR SINE MIR -106 156 106 2 674 571 247 164 6 chr12 11723472 11723643 -109533887 - MTEa LTR MaLR -1 378 181 2 674 291 28 0 0 chr12 11723643 11723679 -109533851 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 674 470 98 0 12 chr12 11723679 11723761 -109533769 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 674 468 0 0 0 chr12 11723761 11723812 -109533718 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 674 813 350 15 0 chr12 11723856 11724122 -109533408 - B4A SINE B4 -20 272 3 2 674 572 302 29 6 chr12 11724123 11724293 -109533237 - MTEa LTR MaLR -205 174 1 2 674 2235 160 88 0 chr12 11725975 11726362 -109531168 + MTC LTR MaLR 1 421 0 2 674 1394 180 60 16 chr12 11726362 11726729 -109530801 + MTC-int LTR MaLR 3 477 -781 2 674 1145 212 62 35 chr12 11726726 11726997 -109530533 + MTC-int LTR MaLR 858 1142 -116 2 674 429 20 0 0 chr12 11726997 11727047 -109530483 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2 674 1145 212 62 35 chr12 11727047 11727063 -109530467 + MTC-int LTR MaLR 1143 1153 -105 2 674 7102 99 6 2 chr12 11727063 11728108 -109529422 - L1_Mus3 LINE L1 -1 6637 5589 2 674 610 176 24 8 chr12 11728127 11728253 -109529277 + MTC-int LTR MaLR 1131 1258 0 2 674 1297 232 116 22 chr12 11728253 11728614 -109528916 + MTC LTR MaLR 1 395 -5 2 674 495 369 49 84 chr12 11728773 11728882 -109528648 + ORR1E LTR MaLR 4 104 -255 2 674 5960 54 1 4 chr12 11728882 11729627 -109527903 + L1Md_F2 LINE L1 5828 6570 -12 2 674 495 369 49 84 chr12 11729627 11729884 -109527646 + ORR1E LTR MaLR 105 357 -2 2 674 1423 59 0 41 chr12 11730079 11730273 -109527257 - B2_Mm2 SINE B2 -9 186 1 2 674 209 189 0 36 chr12 11730479 11730534 -109526996 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 2 674 902 320 59 11 chr12 11730664 11730951 -109526579 + ORR1E LTR MaLR 1 301 -58 2 674 356 82 110 0 chr12 11731919 11731992 -109525538 - Lx LINE L1 -2 6652 6572 2 674 23 0 0 0 chr12 11732257 11732280 -109525250 + AT_rich Low_complexity Low_complexity 1 23 0 2 674 25 0 0 0 chr12 11732305 11732330 -109525200 + AT_rich Low_complexity Low_complexity 1 25 0 2 674 43 56 0 0 chr12 11732389 11732460 -109525070 + AT_rich Low_complexity Low_complexity 1 71 0 2 674 927 100 0 14 chr12 11733071 11733284 -109524246 + (TCTCCC)n Simple_repeat Simple_repeat 1 209 0 2 674 1555 174 35 64 chr12 11733550 11733956 -109523574 + Lx2B LINE L1 6607 7000 0 2 674 208 291 0 0 chr12 11734661 11734716 -109522814 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 674 284 191 0 0 chr12 11734778 11734841 -109522689 - Lx2B LINE L1 -3 6997 6935 2 674 727 244 111 6 chr12 11734855 11735036 -109522494 - B4 SINE B4 -92 200 1 2 674 637 62 41 0 chr12 11735089 11735186 -109522344 + (TTTC)n Simple_repeat Simple_repeat 3 103 0 2 674 5343 105 11 16 chr12 11735228 11736022 -109521508 - Lx LINE L1 0 6654 5865 2 674 252 352 117 0 chr12 11736022 11736150 -109521380 - MLT1F LTR MaLR -124 424 282 2 674 301 281 94 75 chr12 11736602 11736814 -109520716 - L1MD LINE L1 -1774 4372 4157 2 674 236 320 0 0 chr12 11737065 11737143 -109520387 - ID4_ SINE ID -3 80 3 2 674 346 269 104 7 chr12 11737238 11737508 -109520022 - L1M5 LINE L1 -2144 4002 3707 2 674 413 285 22 30 chr12 11737622 11737756 -109519774 - MER3 DNA MER1_type -66 143 11 2 674 373 301 48 27 chr12 11738122 11738269 -109519261 + L1M5 LINE L1 5289 5438 -735 2 674 7808 51 0 0 chr12 11738299 11739561 -109517969 - L1Md_F3 LINE L1 -14 6570 5309 2 674 9935 54 5 1 chr12 11739561 11740889 -109516641 + L1Md_F3 LINE L1 3971 5304 -579 2 674 4294 63 7 0 chr12 11741051 11741602 -109515928 + L1Md_F2 LINE L1 6026 6580 -2 2 674 251 122 20 0 chr12 11745298 11745347 -109512183 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 674 546 305 99 28 chr12 11746164 11746351 -109511179 - MLT1B LTR MaLR -4 386 179 2 674 609 69 0 0 chr12 11746351 11746438 -109511092 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 674 546 305 99 28 chr12 11746438 11746503 -109511027 - MLT1B LTR MaLR -212 178 116 2 674 203 175 0 0 chr12 11748122 11748162 -109509368 + T-rich Low_complexity Low_complexity 1 40 0 2 674 702 65 0 0 chr12 11748360 11748452 -109509078 + (TCC)n Simple_repeat Simple_repeat 2 93 0 2 674 230 217 31 42 chr12 11748489 11748563 -109508967 - RMER21A LTR ERV1 -203 744 672 2 674 5296 67 6 18 chr12 11748563 11749276 -109508254 - L1Md_F2 LINE L1 -2 6580 5877 2 674 230 217 31 42 chr12 11749276 11749297 -109508233 - RMER21A LTR ERV1 -276 671 651 2 674 5904 71 2 6 chr12 11749299 11750111 -109507419 + L1_Mm LINE L1 5021 5829 -54 2 674 331 344 8 8 chr12 11750591 11750720 -109506810 - MLT1J2 LTR MaLR -133 315 187 2 674 382 269 18 27 chr12 11750755 11750866 -109506664 - MLT1D LTR MaLR -2 503 394 2 674 401 283 122 9 chr12 11751049 11751270 -109506260 - MER5C DNA MER1_type -44 269 24 2 674 240 339 76 101 chr12 11752906 11753261 -109504269 + ORR1D2 LTR MaLR 15 360 -10 3 674 700 317 112 36 chr12 11753348 11753652 -109503878 + MTE-int LTR MaLR 122 448 -1132 3 674 621 0 0 0 chr12 11753752 11753821 -109503709 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3 674 315 65 0 0 chr12 11754341 11754387 -109503143 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 674 4003 235 62 42 chr12 11754565 11754895 -109502635 - Lx7 LINE L1 -5 7691 7369 3 674 558 0 0 0 chr12 11754895 11754957 -109502573 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 674 4003 235 62 42 chr12 11754957 11755839 -109501691 - Lx7 LINE L1 -328 7368 6455 3 674 4454 31 52 9 chr12 11757041 11757602 -109499928 - L1Md_F3 LINE L1 -12 6572 5988 3 674 563 48 12 0 chr12 11757602 11757685 -109499845 + L1Md_F3 LINE L1 5899 5982 -602 3 674 284 360 139 35 chr12 11758144 11758374 -109499156 + MIR SINE MIR 9 262 0 3 674 250 277 15 0 chr12 11759479 11759544 -109497986 - MLT1G3 LTR MaLR -47 548 483 3 674 1526 185 93 54 chr12 11760572 11760967 -109496563 - RMER13A LTR ERVK -98 762 307 3 674 372 257 39 19 chr12 11760969 11761072 -109496458 - RLTR23 LTR ERV1 -2 428 324 3 674 920 279 112 14 chr12 11761128 11761484 -109496046 + RLTR22_Mur LTR ERVK 415 805 -1043 3 674 1881 147 27 73 chr12 11761665 11762033 -109495497 - RMER13A LTR ERVK -504 356 6 3 674 305 110 55 0 chr12 11762034 11762107 -109495423 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 674 1082 66 0 7 chr12 11762146 11762284 -109495246 + B1_Mus2 SINE Alu 2 138 -9 3 674 1193 27 0 7 chr12 11762284 11762434 -109495096 + (GAAAA)n Simple_repeat Simple_repeat 2 150 0 3 674 1859 193 84 103 chr12 11762658 11763252 -109494278 + RLTR31A_Mm LTR ERVK 1 583 -1 3 674 419 369 52 52 chr12 11763911 11764237 -109493293 - LTR88b LTR Gypsy? -471 366 41 3 674 342 283 93 9 chr12 11764423 11764530 -109493000 + MER88 LTR ERVL 1 116 -348 3 674 346 339 8 8 chr12 11764689 11764817 -109492713 + MER88 LTR ERVL 337 464 0 3 674 495 266 93 81 chr12 11764875 11764911 -109492619 + CYRA11_Mm Unknown Y-chromosome 136 384 -233 3 674 1116 142 105 62 chr12 11764911 11765121 -109492409 - URR1A DNA MER1_type -5 221 3 3 674 319 175 38 0 chr12 11765604 11765684 -109491846 + Lx9 LINE L1 7555 7637 -7 3 674 27 0 0 0 chr12 11765703 11765730 -109491800 + AT_rich Low_complexity Low_complexity 1 27 0 3 674 927 221 104 4 chr12 11765730 11765885 -109491645 - Lx6 LINE L1 -4 7456 7285 3 674 212 59 29 0 chr12 11765885 11765919 -109491611 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 3 674 927 221 104 4 chr12 11765919 11766013 -109491517 - Lx6 LINE L1 -176 7284 7183 3 674 324 0 0 0 chr12 11766487 11766523 -109491007 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 674 1127 72 0 0 chr12 11766523 11766661 -109490869 - B1_Mus2 SINE Alu -9 138 1 3 674 22 56 0 0 chr12 11767152 11767188 -109490342 + AT_rich Low_complexity Low_complexity 1 36 0 3 674 503 316 100 19 chr12 11767703 11767883 -109489647 - B3 SINE B2 -21 195 3 3 674 668 244 20 25 chr12 11767903 11768105 -109489425 + Lx6 LINE L1 7234 7434 -26 3 674 2097 180 12 37 chr12 11769013 11769422 -109488108 + MTB_Mm LTR MaLR 1 399 -8 3 674 1734 234 78 28 chr12 11769587 11769653 -109487877 + MT2A LTR ERVL 16 81 -452 3 674 1773 91 4 4 chr12 11769653 11769906 -109487624 - Lx2 LINE L1 0 6997 6745 3 674 1734 238 75 49 chr12 11769906 11770320 -109487210 + MT2A LTR ERVL 82 601 0 3 674 508 258 114 24 chr12 11771402 11771648 -109485882 - L1MA4 LINE L1 -359 5941 5674 3 674 5122 95 8 4 chr12 11772183 11772922 -109484608 + MTA_Mm-int LTR MaLR 223 964 -134 3 674 6778 67 0 13 chr12 11772922 11773850 -109483680 - L1Md_F2 LINE L1 -2 6580 5665 3 674 864 86 22 0 chr12 11773850 11773989 -109483541 + MTA_Mm-int LTR MaLR 957 1098 0 3 674 3035 74 5 2 chr12 11773989 11774384 -109483146 + MTA_Mm LTR MaLR 1 396 0 3 674 588 91 0 0 chr12 11774737 11774825 -109482705 + (TCCA)n Simple_repeat Simple_repeat 1 88 0 3 674 485 135 0 82 chr12 11774849 11774946 -109482584 - Lx5 LINE L1 -88 6962 6874 3 674 957 18 0 0 chr12 11775382 11775493 -109482037 + (TC)n Simple_repeat Simple_repeat 2 112 0 3 674 441 339 82 17 chr12 11776246 11776477 -109481053 - MIR SINE MIR -4 258 13 3 674 255 222 40 27 chr12 11776650 11776724 -109480806 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 3 674 600 256 0 8 chr12 11777731 11777865 -109479665 + B3A SINE B2 2 134 -64 3 674 1169 198 9 9 chr12 11777863 11778087 -109479443 - MTC LTR MaLR -8 413 190 3 674 180 0 0 0 chr12 11778088 11778108 -109479422 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 674 270 0 0 0 chr12 11778502 11778532 -109478998 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 674 243 367 22 11 chr12 11778958 11779049 -109478481 + MLT1J1 LTR MaLR 237 328 -116 3 674 334 167 24 0 chr12 11779939 11780023 -109477507 + CT-rich Low_complexity Low_complexity 2 87 0 3 674 683 215 35 7 chr12 11780028 11780173 -109477357 - B1_Mur4 SINE Alu 0 150 2 3 674 248 318 53 26 chr12 11780623 11780736 -109476794 - MLT1A0 LTR MaLR 0 365 250 3 674 1520 245 56 23 chr12 11782350 11782742 -109474788 - MMAR1 DNA Mariner -5 1281 877 3 674 714 24 0 0 chr12 11783230 11783314 -109474216 + (TCCC)n Simple_repeat Simple_repeat 3 86 0 3 674 238 310 14 0 chr12 11783349 11783420 -109474110 - ID4 SINE ID -11 72 1 3 674 479 251 78 28 chr12 11783915 11784095 -109473435 - B3A SINE B2 -9 189 1 3 674 426 296 104 14 chr12 11784097 11784385 -109473145 + L1M3 LINE L1 3882 4195 -1945 3 674 220 292 0 58 chr12 11784499 11784568 -109472962 + ID4_ SINE ID 18 82 -1 3 674 598 281 58 19 chr12 11784784 11784991 -109472539 + B3 SINE B2 1 215 -1 3 674 311 313 101 30 chr12 11785389 11785557 -109471973 - L1MA5A LINE L1 -1802 5894 5715 3 674 307 313 39 65 chr12 11785554 11785814 -109471716 + L1M3 LINE L1 5137 5389 -754 3 674 629 285 63 21 chr12 11785869 11786059 -109471471 + B3 SINE B2 6 203 -13 3 674 287 239 64 21 chr12 11786236 11786330 -109471200 - MTD LTR MaLR -153 266 169 3 674 745 240 123 14 chr12 11786333 11786544 -109470986 + MTD LTR MaLR 1 234 -185 3 674 299 130 19 0 chr12 11786695 11786749 -109470781 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 3 674 183 80 0 0 chr12 11786902 11786927 -109470603 + (A)n Simple_repeat Simple_repeat 1 25 0 3 674 492 165 0 0 chr12 11787724 11787815 -109469715 + GA-rich Low_complexity Low_complexity 3 93 0 3 674 510 310 14 14 chr12 11789062 11789206 -109468324 - B4A SINE B4 -148 144 1 3 674 225 362 128 23 chr12 11789209 11789342 -109468188 - MIRb SINE MIR -101 175 29 3 674 1608 31 0 20 chr12 11790193 11790388 -109467142 + B2_Mm1a SINE B2 1 191 -2 3 674 26 50 0 0 chr12 11791396 11791436 -109466094 + AT_rich Low_complexity Low_complexity 1 40 0 3 674 259 299 36 45 chr12 11791609 11791721 -109465809 + MamRep434 DNA TcMar 181 291 -135 3 674 2127 136 12 0 chr12 11792011 11792349 -109465181 + Lx2 LINE L1 6656 6997 0 3 674 193 98 49 0 chr12 11792777 11792818 -109464712 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 674 216 135 0 0 chr12 11794273 11794310 -109463220 + (GGA)n Simple_repeat Simple_repeat 1 37 0 3 674 572 319 77 0 chr12 11795222 11795391 -109462139 - B3A SINE B2 -16 182 1 3 674 405 58 0 0 chr12 11795523 11795575 -109461955 + (CCA)n Simple_repeat Simple_repeat 1 52 0 3 674 267 184 35 0 chr12 11795577 11795664 -109461866 + (CAT)n Simple_repeat Simple_repeat 2 91 0 3 674 198 71 0 0 chr12 11795662 11795690 -109461840 + (TCC)n Simple_repeat Simple_repeat 3 30 0 3 674 261 83 0 0 chr12 11795690 11795726 -109461804 + (CCA)n Simple_repeat Simple_repeat 3 38 0 3 674 312 273 70 45 chr12 11795807 11795964 -109461566 + MIR SINE MIR 99 259 -3 3 674 615 301 185 19 chr12 11796343 11796365 -109461165 - MTE2b LTR MaLR 0 379 360 3 674 468 0 0 0 chr12 11796365 11796417 -109461113 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 84 992 124 0 0 chr12 11796417 11796554 -109460976 - B1_Mus1 SINE Alu -9 139 3 3 675 615 301 185 19 chr12 11796554 11796855 -109460675 - MTE2b LTR MaLR -20 359 2 3 675 270 276 162 43 chr12 11797113 11797348 -109460182 - L5 LINE RTE -4 2261 1999 3 675 333 351 7 22 chr12 11797404 11797541 -109459989 - L1M5 LINE L1 -482 5680 5546 3 675 301 310 55 37 chr12 11797738 11797902 -109459628 + Lx8 LINE L1 6978 7144 -329 3 675 447 226 9 0 chr12 11797911 11798017 -109459513 + RMER3D-int LTR ERVK 2731 2837 -5 3 675 2435 127 52 19 chr12 11798021 11798445 -109459085 + BGLII_B LTR ERVK 4 441 0 3 675 637 306 25 0 chr12 11798445 11798602 -109458928 + Lx8 LINE L1 7166 7326 -147 3 675 425 270 48 21 chr12 11799724 11799949 -109457581 + L1MA9 LINE L1 1970 2217 -4881 3 675 540 91 0 0 chr12 11799982 11800070 -109457460 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 675 183 42 0 0 chr12 11800071 11800095 -109457435 + (TCCA)n Simple_repeat Simple_repeat 4 27 0 3 675 250 323 0 0 chr12 11800096 11800161 -109457369 + ID4 SINE ID 19 83 0 3 675 230 336 74 30 chr12 11800516 11800651 -109456879 + Tigger5 DNA MER2_type 1 141 -2265 3 675 303 311 132 39 chr12 11800958 11801206 -109456324 + L1MA9 LINE L1 2787 2990 -4178 3 675 1083 217 110 37 chr12 11801264 11801589 -109455941 - IAPEY3_LTR LTR ERVK 0 332 14 3 675 622 343 42 58 chr12 11801643 11801903 -109455627 + B4A SINE B4 36 291 -1 3 675 941 276 98 36 chr12 11802533 11803116 -109454414 + L1MA9 LINE L1 5556 6174 -987 3 675 657 281 57 41 chr12 11803181 11803523 -109454007 + L1MA9 LINE L1 6324 6670 -642 3 675 923 287 116 21 chr12 11803959 11804564 -109452966 + L1MA9 LINE L1 6665 7326 -7 3 675 278 268 127 33 chr12 11804563 11804775 -109452755 - L1M4 LINE L1 -1315 4831 4600 3 675 238 237 50 50 chr12 11804798 11804878 -109452652 - L1M2 LINE L1 -848 5464 5385 3 675 3484 158 26 26 chr12 11804924 11805566 -109451964 + RLTR26 LTR ERVK 1 642 0 3 675 332 173 194 67 chr12 11805582 11805689 -109451841 - Lx9 LINE L1 -22 7622 7507 3 675 348 24 0 0 chr12 11805689 11805730 -109451800 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 675 332 173 194 67 chr12 11805730 11805802 -109451728 - Lx9 LINE L1 -138 7506 7421 3 675 239 274 212 21 chr12 11805855 11806190 -109451340 - L1M4 LINE L1 -1588 4558 4160 3 675 211 211 0 0 chr12 11806603 11806655 -109450875 + T-rich Low_complexity Low_complexity 1 52 0 3 675 1046 230 84 0 chr12 11806867 11807128 -109450402 + Lx8 LINE L1 6663 6945 -528 3 675 405 285 119 41 chr12 11807997 11808191 -109449339 - MLT1E3 LTR MaLR -24 600 392 3 675 249 214 54 0 chr12 11808336 11808413 -109449117 - MLT1E3 LTR MaLR -483 197 106 3 675 310 205 0 82 chr12 11808470 11808592 -109448938 - Lx9 LINE L1 -1 7643 7532 3 675 369 0 0 0 chr12 11808595 11808636 -109448894 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 675 620 87 0 28 chr12 11809573 11809679 -109447851 - L1_Mus1 LINE L1 0 6567 6465 4 675 396 348 0 36 chr12 11811439 11811606 -109445924 - RSINE1 SINE B4 -2 163 3 4 675 336 24 0 0 chr12 11812187 11812228 -109445302 + (TTG)n Simple_repeat Simple_repeat 1 41 0 4 675 21 0 0 0 chr12 11813130 11813151 -109444379 + AT_rich Low_complexity Low_complexity 1 21 0 4 675 231 103 0 0 chr12 11813156 11813195 -109444335 + (CCCTAA)n Simple_repeat Simple_repeat 6 44 0 4 675 1782 109 54 7 chr12 11814320 11814614 -109442916 + Lx2 LINE L1 6688 6995 -2 4 675 2680 181 36 107 chr12 11814639 11815277 -109442253 - RMER19C LTR ERVK -18 593 1 4 675 1122 256 75 75 chr12 11815429 11815804 -109441726 + MTEb LTR MaLR 3 377 -2 4 675 322 357 53 11 chr12 11817914 11818101 -109439429 - RMER15 LTR ERVL -161 414 220 4 675 328 265 34 17 chr12 11818137 11818256 -109439274 - RMER15 LTR ERVL -453 122 2 4 675 275 327 98 5 chr12 11819118 11819342 -109438188 - L1M5 LINE L1 -2527 3619 3375 4 675 2453 75 0 3 chr12 11819379 11819702 -109437828 + L1_Mus1 LINE L1 6244 6565 -2 4 675 423 98 0 0 chr12 11820719 11820780 -109436750 + (TATG)n Simple_repeat Simple_repeat 3 63 0 4 675 414 0 0 0 chr12 11822594 11822640 -109434890 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 675 1339 53 0 0 chr12 11822640 11822800 -109434730 - B2_Mm1a SINE B2 -32 161 2 4 675 209 321 286 5 chr12 11822828 11823013 -109434517 - MIR SINE MIR 0 262 26 4 675 638 243 22 7 chr12 11823241 11823378 -109434152 - ID_B1 SINE B4 -13 211 73 4 675 660 294 0 7 chr12 11823665 11823802 -109433728 + B3A SINE B2 4 139 -59 4 675 860 337 86 23 chr12 11824495 11824972 -109432558 + Lx8 LINE L1 6377 6883 -590 4 675 1545 212 57 29 chr12 11825254 11825603 -109431927 - ORR1B2 LTR MaLR -8 359 1 4 675 27 73 0 0 chr12 11825842 11825897 -109431633 + AT_rich Low_complexity Low_complexity 1 55 0 4 675 296 322 79 40 chr12 11826544 11826696 -109430834 - Arthur1B DNA Tip100 -1035 190 33 4 675 3298 57 5 5 chr12 11826996 11827421 -109430109 - L1Md_F3 LINE L1 0 6584 6160 4 675 2286 78 7 0 chr12 11827422 11827729 -109429801 - L1_Mm LINE L1 -314 5569 5261 4 675 5712 76 11 13 chr12 11828253 11829040 -109428490 - L1Md_F2 LINE L1 -3 6579 5794 4 675 311 270 14 0 chr12 11829104 11829178 -109428352 + B4 SINE B4 2 76 -216 4 675 417 308 49 63 chr12 11829233 11829375 -109428155 - B4A SINE B4 -65 227 88 4 675 242 157 20 0 chr12 11829427 11829478 -109428052 + T-rich Low_complexity Low_complexity 3 54 0 4 675 298 312 0 12 chr12 11829904 11829985 -109427545 + MLT1A1 LTR MaLR 248 327 -81 4 675 186 71 0 0 chr12 11830421 11830449 -109427081 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 675 4716 56 0 3 chr12 11830465 11831058 -109426472 - L1Md_F2 LINE L1 0 6582 5992 4 675 4227 46 2 0 chr12 11831058 11831711 -109425819 + L1Md_F2 LINE L1 5359 6012 -570 4 675 227 138 203 17 chr12 11831755 11831814 -109425716 + MLT1A1 LTR MaLR 407 476 -29 4 675 820 319 42 28 chr12 11832021 11832308 -109425222 + MLT1A0 LTR MaLR 25 315 -50 4 675 336 323 0 99 chr12 11832344 11832485 -109425045 - MLT1C LTR MaLR -330 137 11 4 675 417 281 79 34 chr12 11833201 11833295 -109424235 - L1MA5 LINE L1 -469 5831 5740 4 675 3984 53 0 4 chr12 11833295 11833772 -109423758 + MT2C_Mm LTR ERVL 1 475 0 4 675 417 281 79 34 chr12 11833772 11834005 -109423525 - L1MA5 LINE L1 -561 5739 5489 4 675 235 227 0 0 chr12 11834041 11834085 -109423445 - RSINE1 SINE B4 -104 61 18 4 675 727 312 11 0 chr12 11834096 11834272 -109423258 + ORR1E LTR MaLR 13 190 -169 4 675 668 163 6 39 chr12 11834272 11834451 -109423079 + CT-rich Low_complexity Low_complexity 4 176 0 4 675 345 62 0 0 chr12 11834451 11834499 -109423031 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 675 1133 332 94 61 chr12 11834555 11834836 -109422694 + Lx8 LINE L1 6437 6714 -759 4 675 531 299 6 38 chr12 11834836 11834996 -109422534 + RSINE1 SINE B4 3 157 -8 4 675 1133 332 94 61 chr12 11834996 11835716 -109421814 + Lx8 LINE L1 6715 7471 -2 4 675 504 95 0 0 chr12 11837249 11837333 -109420197 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 675 369 0 0 0 chr12 11837333 11837374 -109420156 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 675 1011 25 0 0 chr12 11837526 11837648 -109419882 + (TTCC)n Simple_repeat Simple_repeat 1 122 0 4 675 245 140 18 0 chr12 11839871 11839928 -109417602 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 675 196 267 82 45 chr12 11840125 11840235 -109417295 + MIR3 SINE MIR 50 163 -45 4 675 295 205 24 12 chr12 11841284 11841368 -109416162 + CT-rich Low_complexity Low_complexity 4 88 0 4 675 732 275 72 104 chr12 11841395 11841769 -109415761 - Lx5 LINE L1 -3 7047 6686 4 675 223 337 82 0 chr12 11842499 11842597 -109414933 + MIRm SINE MIR 60 165 -111 4 675 602 235 29 7 chr12 11842862 11842999 -109414531 + B1_Mur1 SINE Alu 9 148 -1 4 675 28 0 0 0 chr12 11843065 11843093 -109414437 + AT_rich Low_complexity Low_complexity 1 28 0 4 675 1142 256 94 34 chr12 11843582 11843934 -109413596 - MTE2b LTR MaLR -2 377 5 4 675 253 350 81 20 chr12 11844208 11844307 -109413223 - MIRb SINE MIR -142 126 22 4 675 198 91 0 0 chr12 11844587 11844620 -109412910 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 675 209 312 16 0 chr12 11845425 11845489 -109412041 - MER5A DNA MER1_type -89 100 36 4 675 321 320 104 22 chr12 11845625 11845807 -109411723 - L2a LINE L2 0 3426 3230 4 675 284 327 102 55 chr12 11846037 11846334 -109411196 - L2a LINE L2 -320 3106 2792 4 675 200 358 20 96 chr12 11846717 11846812 -109410718 - L3 LINE CR1 -191 4298 4209 4 675 1015 196 63 222 chr12 11846812 11847257 -109410273 + ORR1D1 LTR MaLR 1 374 0 4 675 200 358 20 96 chr12 11847257 11847359 -109410171 - L3 LINE CR1 -281 4208 4116 4 675 353 336 83 32 chr12 11847503 11847780 -109409750 + B4 SINE B4 2 292 0 4 675 3796 86 6 0 chr12 11847781 11848299 -109409231 + L1_Mus2 LINE L1 6070 6566 0 4 675 238 226 48 0 chr12 11848772 11848834 -109408696 - MER5B DNA MER1_type -36 142 78 4 675 193 213 106 0 chr12 11848938 11848985 -109408545 + MIR SINE MIR 79 130 -132 4 675 353 276 107 43 chr12 11849927 11850067 -109407463 + L1MB7 LINE L1 6020 6168 -16 4 675 521 256 110 16 chr12 11850080 11850334 -109407196 + L1M4 LINE L1 2560 2837 -3309 4 675 1045 311 7 25 chr12 11850334 11850611 -109406919 + B4 SINE B4 6 277 -15 4 675 541 215 90 39 chr12 11850745 11851079 -109406451 + L1M4 LINE L1 2900 3250 -2896 4 675 186 338 62 27 chr12 11851509 11851655 -109405875 + MIRb SINE MIR 24 174 -94 4 675 311 364 27 20 chr12 11852076 11852222 -109405308 + MIR SINE MIR 78 224 -38 4 675 731 236 47 57 chr12 11853368 11853561 -109403969 + B3A SINE B2 7 197 -1 4 675 938 248 43 25 chr12 11854601 11854744 -109402786 - Lx5 LINE L1 -4 7046 6899 4 675 354 98 0 0 chr12 11854744 11854795 -109402735 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 675 938 248 43 25 chr12 11854795 11854932 -109402598 - Lx5 LINE L1 -152 6898 6762 4 675 2138 197 42 15 chr12 11854937 11855411 -109402119 + Lx5 LINE L1 6273 6759 -291 4 675 243 365 12 0 chr12 11855563 11855648 -109401882 - RMER15 LTR ERVL -120 455 370 4 675 343 319 93 66 chr12 11857118 11857269 -109400261 + RSINE1 SINE B4 3 157 -8 4 675 232 147 0 0 chr12 11857308 11857377 -109400153 + (GGAGAA)n Simple_repeat Simple_repeat 1 69 0 4 675 886 149 11 0 chr12 11857386 11857521 -109400009 + polypurine Low_complexity Low_complexity 4 139 0 4 675 1312 56 11 0 chr12 11857521 11857699 -109399831 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 675 886 149 11 0 chr12 11857699 11857737 -109399793 + polypurine Low_complexity Low_complexity 140 178 0 4 675 342 284 108 0 chr12 11858413 11858515 -109399015 + PB1D10 SINE Alu 5 117 0 4 675 835 256 35 0 chr12 11858909 11859112 -109398418 + B3 SINE B2 2 211 -5 4 675 660 143 0 0 chr12 11859451 11859563 -109397967 + (TAGG)n Simple_repeat Simple_repeat 4 115 0 4 675 247 83 28 0 chr12 11859563 11859599 -109397931 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 4 675 1087 104 0 0 chr12 11859634 11859778 -109397752 - B1_Mus2 SINE Alu -1 146 3 4 675 971 70 7 71 chr12 11860177 11860331 -109397199 + B1_Mm SINE Alu 2 145 -2 4 675 282 29 0 0 chr12 11860331 11860366 -109397164 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 675 2191 152 62 25 chr12 11860990 11861395 -109396135 + MTC LTR MaLR 1 420 -1 4 675 598 354 66 40 chr12 11861599 11862026 -109395504 + LTR73 LTR ERV1 85 522 -50 4 675 239 234 0 0 chr12 11862441 11862488 -109395042 + ID SINE ID 4 50 -174 4 675 232 279 14 14 chr12 11862445 11862514 -109395016 + BC1_Mm scRNA scRNA 8 76 -76 4 675 239 241 131 12 chr12 11862643 11862669 -109394861 + B1F SINE Alu 47 140 -9 4 675 303 172 17 0 chr12 11862669 11862727 -109394803 + ID_B1 SINE B4 157 215 -9 4 675 252 0 0 0 chr12 11863918 11863946 -109393584 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 675 4945 74 31 5 chr12 11864086 11864754 -109392776 - L1Md_F2 LINE L1 -13 6569 5884 4 675 206 265 23 35 chr12 11865688 11865774 -109391756 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 4 675 658 114 23 0 chr12 11866014 11866146 -109391384 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 4 675 1997 148 33 189 chr12 11866389 11866898 -109390632 + RLTR23 LTR ERV1 1 430 0 4 675 278 247 123 32 chr12 11868878 11869033 -109388497 - L1M5 LINE L1 -2200 3946 3778 4 675 205 267 0 0 chr12 11869184 11869229 -109388301 + CT-rich Low_complexity Low_complexity 3 47 0 4 675 922 112 0 40 chr12 11869229 11869378 -109388152 - B1_Mus1 SINE Alu -5 143 1 4 675 1044 106 0 7 chr12 11869605 11869748 -109387782 + B1_Mus2 SINE Alu 1 142 -5 4 675 1020 124 0 17 chr12 11870901 11871082 -109386448 + (TC)n Simple_repeat Simple_repeat 1 178 0 4 675 216 0 0 0 chr12 11871082 11871105 -109386425 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 675 504 340 0 0 chr12 11871180 11871333 -109386197 - Lx8 LINE L1 -360 7113 6961 4 675 568 317 4 46 chr12 11871354 11871492 -109386038 - Lx8 LINE L1 -771 6702 6571 4 675 3178 48 5 8 chr12 11871492 11871889 -109385641 - MTA_Mm LTR MaLR 0 396 1 5 675 568 317 4 46 chr12 11871889 11871991 -109385539 - Lx8 LINE L1 -903 6570 6472 4 675 471 88 21 21 chr12 11872498 11872591 -109384939 - L1_Mus3 LINE L1 -8 6630 6538 5 675 553 49 25 0 chr12 11872666 11872747 -109384783 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 675 260 313 0 0 chr12 11872914 11873029 -109384501 + L1MEf LINE L1 1420 1534 -4889 5 675 366 356 45 60 chr12 11873133 11873399 -109384131 + L1MEf LINE L1 1811 2072 -4965 5 675 205 229 21 0 chr12 11873400 11873448 -109384082 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 5 675 4903 64 8 2 chr12 11873936 11874565 -109382965 - L1Md_F2 LINE L1 0 6582 5950 5 675 41 36 0 0 chr12 11874566 11874621 -109382909 + AT_rich Low_complexity Low_complexity 1 55 0 5 675 298 254 0 17 chr12 11874697 11874757 -109382773 + ID4 SINE ID 3 61 -22 5 675 939 142 0 0 chr12 11874781 11874957 -109382573 + (CA)n Simple_repeat Simple_repeat 2 177 0 5 675 726 154 0 0 chr12 11874980 11875129 -109382401 + (CA)n Simple_repeat Simple_repeat 1 149 0 5 675 303 179 0 0 chr12 11875155 11875222 -109382308 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 675 830 321 137 22 chr12 11875253 11875950 -109381580 + L1MEf LINE L1 3199 3976 -2965 5 675 216 0 0 0 chr12 11875950 11875974 -109381556 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 675 186 71 0 0 chr12 11875978 11876006 -109381524 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 675 830 321 137 22 chr12 11876006 11876114 -109381416 + L1MEf LINE L1 3977 4097 -2844 5 675 349 295 37 15 chr12 11876552 11876782 -109380748 + L1M5 LINE L1 3800 4036 -2110 5 675 652 277 305 27 chr12 11876865 11877160 -109380370 + MTEa LTR MaLR 1 377 -2 5 675 350 314 80 15 chr12 11877196 11877652 -109379878 + L1MEf LINE L1 4949 5435 -1506 5 675 383 291 166 55 chr12 11877687 11877783 -109379747 + L1MEf LINE L1 5540 5623 -1318 5 675 501 17 0 0 chr12 11877783 11877841 -109379689 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 675 383 291 166 55 chr12 11877841 11878165 -109379365 + L1MEf LINE L1 5624 6006 -935 5 675 1383 102 5 0 chr12 11878254 11878451 -109379079 + L1_Mus2 LINE L1 6368 6565 -1 5 675 694 337 80 45 chr12 11878610 11878986 -109378544 + MLT1E3 LTR MaLR 280 668 -12 5 675 1425 39 0 6 chr12 11879349 11879528 -109378002 + L1Md_T LINE L1 6403 6580 -2 5 675 924 9 0 0 chr12 11879800 11879905 -109377625 + (TTC)n Simple_repeat Simple_repeat 2 106 0 5 675 252 185 0 0 chr12 11879908 11879962 -109377568 + CT-rich Low_complexity Low_complexity 2 55 0 5 675 955 308 44 16 chr12 11879976 11880293 -109377237 + ORR1E LTR MaLR 34 359 0 5 675 260 298 16 24 chr12 11880313 11880440 -109377090 + L1MC1 LINE L1 5918 6043 -290 5 675 327 273 26 0 chr12 11880523 11880600 -109376930 - B3 SINE B2 -6 210 132 5 675 657 69 0 0 chr12 11880669 11880756 -109376774 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 675 248 360 18 0 chr12 11880778 11880889 -109376641 - MIRc SINE MIR -65 203 91 5 675 558 0 0 0 chr12 11881800 11881862 -109375668 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 675 183 309 95 76 chr12 11881869 11881974 -109375556 - MIRc SINE MIR -139 129 23 5 675 3204 212 55 8 chr12 11883897 11884610 -109372920 - Lx5 LINE L1 -3 7047 6302 5 675 182 241 96 16 chr12 11884862 11884950 -109372580 - MIRb SINE MIR -139 129 28 5 675 523 362 92 62 chr12 11886647 11887135 -109370395 + MLT2B3 LTR ERVL 1 503 -51 5 675 342 0 0 0 chr12 11887493 11887531 -109369999 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 675 468 0 0 0 chr12 11887531 11887582 -109369948 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 675 480 35 0 0 chr12 11887598 11887656 -109369874 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 5 675 777 262 9 23 chr12 11890522 11890741 -109366789 - B3 SINE B2 0 216 1 5 675 220 132 0 70 chr12 11891395 11891452 -109366078 + (CATA)n Simple_repeat Simple_repeat 2 54 0 5 675 424 370 38 43 chr12 11891939 11892148 -109365382 - MER20 DNA MER1_type -5 214 7 5 675 1528 91 18 0 chr12 11892329 11892548 -109364982 - L1_Mus2 LINE L1 -2 6564 6342 5 675 2060 46 0 4 chr12 11892551 11892813 -109364717 + L1_Mus2 LINE L1 6069 6329 -237 5 675 1947 136 59 6 chr12 11893299 11893653 -109363877 + Lx2 LINE L1 6623 6995 -2 5 675 226 257 125 29 chr12 11893667 11893771 -109363759 + MIRb SINE MIR 104 217 -51 5 675 4025 164 34 83 chr12 11894583 11895507 -109362023 - RLTR13D6 LTR ERVK -21 881 4 5 675 5236 144 19 47 chr12 11895805 11896098 -109361432 - L1_Mus3 LINE L1 0 6638 6352 5 675 4178 47 64 6 chr12 11896098 11896631 -109360899 + LTRIS2 LTR ERV1 1 564 0 5 675 6929 152 11 27 chr12 11896631 11898410 -109359120 - L1_Mus3 LINE L1 -287 6351 4601 5 675 2855 106 32 62 chr12 11898411 11899244 -109358286 + L1VL4 LINE L1 576 1366 -2193 5 675 546 268 11 32 chr12 11899250 11899439 -109358091 - L1VL4 LINE L1 -5737 565 381 5 675 2405 221 29 14 chr12 11899437 11899992 -109357538 - L1VL2 LINE L1 -5677 658 96 5 675 461 318 144 23 chr12 11900241 11900415 -109357115 + MLT1A0 LTR MaLR 171 365 0 5 675 287 277 20 26 chr12 11901645 11901797 -109355733 + (TA)n Simple_repeat Simple_repeat 2 152 0 5 675 1042 244 35 137 chr12 11901883 11902305 -109355225 + MTE2a LTR MaLR 1 379 0 5 675 300 231 21 42 chr12 11902969 11903064 -109354466 + CT-rich Low_complexity Low_complexity 4 96 0 5 675 1718 337 60 23 chr12 11903380 11904393 -109353137 - Lx8 LINE L1 -2 7471 6421 5 675 23 54 0 0 chr12 11904591 11904628 -109352902 + AT_rich Low_complexity Low_complexity 1 37 0 5 675 2015 249 12 2 chr12 11904671 11905162 -109352368 - Lx2B LINE L1 -4 6996 6501 5 675 572 167 0 0 chr12 11905296 11905386 -109352144 - Lx4A LINE L1 -226 6832 6743 5 675 396 208 0 0 chr12 11907418 11907514 -109350016 + (ATGGTG)n Simple_repeat Simple_repeat 1 96 0 5 675 1373 304 101 11 chr12 11907924 11908443 -109349087 + Lx8 LINE L1 6773 7331 -142 5 675 183 42 0 0 chr12 11908443 11908467 -109349063 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 675 1373 304 101 11 chr12 11908467 11908589 -109348941 + Lx8 LINE L1 7332 7471 -2 5 675 273 208 0 0 chr12 11909577 11909649 -109347881 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 675 229 319 0 11 chr12 11909652 11909747 -109347783 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 5 675 438 271 60 54 chr12 11910659 11910827 -109346703 - ORR1D2 LTR MaLR -1 373 205 5 675 918 284 52 93 chr12 11911117 11911502 -109346028 + RMER20B LTR ERVK 236 604 -23 5 675 351 320 10 29 chr12 11911578 11911681 -109345849 + RMER20B LTR ERVK 504 604 -23 5 675 1061 248 34 21 chr12 11911677 11911916 -109345614 - ORR1D2 LTR MaLR -123 247 6 5 675 446 285 217 54 chr12 11911945 11912627 -109344903 + L1ME1 LINE L1 4976 5763 -416 5 675 2632 54 24 0 chr12 11912627 11912962 -109344568 + L1_Mus3 LINE L1 6288 6630 -8 5 675 446 279 89 59 chr12 11912962 11913138 -109344392 + L1ME1 LINE L1 5764 5947 -232 5 675 561 30 0 0 chr12 11914003 11914070 -109343460 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 675 665 311 55 55 chr12 11914240 11914584 -109342946 - MLT2B1 LTR ERVL -176 344 1 5 675 727 333 44 38 chr12 11914671 11914989 -109342541 + ORR1E LTR MaLR 6 325 -34 5 675 357 24 0 0 chr12 11915879 11915921 -109341609 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 675 306 0 0 0 chr12 11915921 11915954 -109341576 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 675 566 159 9 0 chr12 11915954 11916061 -109341469 + GA-rich Low_complexity Low_complexity 3 110 0 5 675 816 283 9 0 chr12 11916210 11916422 -109341108 + Lx8 LINE L1 7014 7227 -246 5 675 363 73 0 0 chr12 11916510 11916565 -109340965 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 5 675 802 192 7 7 chr12 11916600 11916747 -109340783 + B1_Mur4 SINE Alu 1 147 -3 5 675 786 152 0 33 chr12 11916749 11916932 -109340598 + GA-rich Low_complexity Low_complexity 4 180 0 5 675 218 116 23 0 chr12 11916943 11916986 -109340544 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 5 675 515 324 27 5 chr12 11917082 11917268 -109340262 - MLT1C LTR MaLR -8 459 270 5 675 2274 96 6 9 chr12 11917281 11917608 -109339922 - L1_Mus3 LINE L1 -7 6631 6306 5 675 621 110 0 0 chr12 11917609 11917700 -109339830 + L1_Mus3 LINE L1 6216 6306 -332 5 675 449 345 57 29 chr12 11918083 11918292 -109339238 + RMER15 LTR ERVL 307 521 -54 5 675 869 159 236 0 chr12 11918698 11918880 -109338650 - URR1B DNA MER1_type 0 225 1 5 675 637 262 53 29 chr12 11919069 11919277 -109338253 + RMER15 LTR ERVL 276 488 -87 5 675 642 37 0 0 chr12 11920530 11920611 -109336919 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 675 186 71 0 0 chr12 11921773 11921801 -109335729 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 675 6381 38 1 0 chr12 11922922 11923683 -109333847 - L1Md_T LINE L1 0 6582 5821 5 675 786 261 178 25 chr12 11923684 11924038 -109333492 - Lx6 LINE L1 -41 7419 7012 5 675 309 68 0 0 chr12 11924483 11924527 -109333003 + (TTTAA)n Simple_repeat Simple_repeat 1 44 0 5 675 3310 124 11 1 chr12 11924554 11925459 -109332071 + L1Md_F LINE L1 669 1583 -4300 5 675 7452 71 1 1 chr12 11925453 11926767 -109330763 + L1_Mus1 LINE L1 5312 6567 0 5 675 351 0 0 0 chr12 11927092 11927131 -109330399 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 675 504 0 0 0 chr12 11927324 11927380 -109330150 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 676 334 325 167 34 chr12 11927567 11927806 -109329724 + B4 SINE B4 4 274 -18 5 676 419 207 55 0 chr12 11927857 11928021 -109329509 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 5 676 477 211 122 6 chr12 11928265 11928437 -109329093 + Lx9 LINE L1 7399 7590 -54 5 676 3717 51 0 0 chr12 11928430 11928924 -109328606 - L1_Mm LINE L1 -1804 4079 3586 5 676 5405 52 0 4 chr12 11928924 11929599 -109327931 + L1Md_F2 LINE L1 5899 6570 -12 5 676 260 177 16 0 chr12 11929603 11929665 -109327865 + Lx9 LINE L1 7582 7644 0 5 676 344 344 117 5 chr12 11929828 11930050 -109327480 + L1ME3A LINE L1 5858 6104 -69 5 676 508 29 29 0 chr12 11930086 11930156 -109327374 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 676 1311 187 0 0 chr12 11931253 11931478 -109326052 + URR1B DNA MER1_type 1 225 0 5 676 243 217 0 0 chr12 11931667 11931727 -109325803 + GA-rich Low_complexity Low_complexity 3 62 0 5 676 2031 105 23 37 chr12 11931727 11932140 -109325390 - RLTR10A LTR ERVK 0 390 1 5 676 234 105 0 0 chr12 11932140 11932178 -109325352 + (GGGGA)n Simple_repeat Simple_repeat 4 41 0 5 676 1388 68 10 3 chr12 11932173 11932465 -109325065 + (GAA)n Simple_repeat Simple_repeat 1 293 0 5 676 823 174 14 14 chr12 11932544 11932690 -109324840 + B1_Mur4 SINE Alu 5 150 0 5 676 1282 102 5 5 chr12 11932690 11932896 -109324634 - L1_Mm LINE L1 -491 5392 5187 6 676 1098 83 0 0 chr12 11932898 11933042 -109324488 + B2_Mm2 SINE B2 2 145 -50 6 676 2044 65 0 26 chr12 11933060 11933328 -109324202 + L1_Mus1 LINE L1 6305 6565 -2 6 676 883 244 232 26 chr12 11935011 11935394 -109322136 - RMER20B LTR ERVK -38 589 128 6 676 531 0 0 0 chr12 11935544 11935603 -109321927 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 676 247 214 34 0 chr12 11936575 11936664 -109320866 + CT-rich Low_complexity Low_complexity 4 95 0 6 676 500 279 80 7 chr12 11938100 11938237 -109319293 + RSINE1 SINE B4 2 148 -17 6 676 222 37 0 0 chr12 11938263 11938290 -109319240 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 676 237 386 71 35 chr12 11938503 11938672 -109318858 - MER20 DNA MER1_type -39 180 6 6 676 598 184 0 34 chr12 11938804 11938922 -109318608 - B1_Mm SINE Alu -24 123 10 6 676 3208 201 3 2 chr12 11938930 11939499 -109318031 + Lx5 LINE L1 6468 7037 -13 6 676 25 95 0 0 chr12 11939502 11939576 -109317954 + AT_rich Low_complexity Low_complexity 1 74 0 6 676 237 369 139 6 chr12 11939777 11939935 -109317595 + L2a LINE L2 3243 3421 -5 6 676 6371 65 45 1 chr12 11940010 11940887 -109316643 - L1_Mus1 LINE L1 -2 6565 5651 6 676 14937 114 3 0 chr12 11940884 11943236 -109314294 - L1_Mm LINE L1 -809 5074 2717 6 676 207 0 0 0 chr12 11943476 11943499 -109314031 + (TTA)n Simple_repeat Simple_repeat 2 24 0 6 676 321 378 75 16 chr12 11943583 11943843 -109313687 - L1M5 LINE L1 -2184 3962 3682 6 676 432 0 0 0 chr12 11943843 11943891 -109313639 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 676 321 378 75 16 chr12 11943891 11944014 -109313516 - L1M5 LINE L1 -2465 3681 3557 6 676 1101 150 5 0 chr12 11944017 11944210 -109313320 + L1_Mus4 LINE L1 6442 6635 -1 6 676 246 23 70 0 chr12 11944888 11944931 -109312599 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 676 1022 204 36 32 chr12 11945082 11945186 -109312344 - Lx4B LINE L1 -4 7054 6955 6 676 324 0 0 0 chr12 11945186 11945222 -109312308 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 676 1022 204 36 32 chr12 11945222 11945396 -109312134 - Lx4B LINE L1 -104 6954 6775 6 676 923 153 18 0 chr12 11946112 11946275 -109311255 - URR1A DNA MER1_type -3 223 58 6 676 384 276 0 84 chr12 11946623 11946730 -109310800 - MTEa LTR MaLR -281 98 1 6 676 1672 249 37 49 chr12 11947125 11947615 -109309915 + RMER19C LTR ERVK 98 581 -30 6 676 547 236 27 33 chr12 11947615 11947802 -109309728 + Lx4B LINE L1 6752 7028 -30 6 676 24 32 0 0 chr12 11947802 11947833 -109309697 + AT_rich Low_complexity Low_complexity 1 31 0 6 676 1223 45 0 0 chr12 11949162 11949316 -109308214 + L1_Mus1 LINE L1 6413 6566 -1 6 676 468 143 0 0 chr12 11949483 11949567 -109307963 + (TG)n Simple_repeat Simple_repeat 2 85 0 6 676 779 169 49 0 chr12 11950224 11950366 -109307164 + URR1A DNA MER1_type 78 226 0 6 676 2591 49 3 3 chr12 11950774 11951101 -109306429 + L1_Mus2 LINE L1 6239 6565 -1 6 676 531 212 0 0 chr12 11952231 11952344 -109305186 + L1MC LINE L1 5542 5654 -2131 6 676 2843 174 24 9 chr12 11952631 11953545 -109303985 + L1_Mur1 LINE L1 862 1795 -2117 6 676 5575 181 34 35 chr12 11953541 11955251 -109302279 + Lx4B LINE L1 5238 6954 -46 6 676 432 0 0 0 chr12 11955290 11955338 -109302192 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 6 676 993 301 63 18 chr12 11955444 11955776 -109301754 - MTEb LTR MaLR 0 379 33 6 676 970 283 34 11 chr12 11955819 11956087 -109301443 + MTE2b LTR MaLR 106 379 0 6 676 315 282 54 24 chr12 11957207 11957374 -109300156 - L1MB8 LINE L1 -115 6063 5892 6 676 207 175 0 0 chr12 11957652 11957692 -109299838 + (CAA)n Simple_repeat Simple_repeat 2 41 0 6 676 228 67 0 0 chr12 11957692 11957722 -109299808 + (ATG)n Simple_repeat Simple_repeat 1 30 0 6 676 8329 46 2 2 chr12 11958283 11960032 -109297498 - L1Md_F2 LINE L1 -1 6581 4831 6 676 210 71 0 0 chr12 11960238 11960266 -109297264 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 676 719 160 17 0 chr12 11960267 11960386 -109297144 - B1_Mur3 SINE Alu -8 141 21 6 676 195 69 0 0 chr12 11960536 11960565 -109296965 + (T)n Simple_repeat Simple_repeat 1 29 0 6 676 39436 7 0 0 chr12 11960567 11966945 -109290585 - L1Md_A LINE L1 0 6582 205 6 676 205 180 65 16 chr12 11968353 11968415 -109289115 - MIR SINE MIR -107 155 91 6 676 22779 159 26 18 chr12 11969141 11975458 -109282072 - Lx2B LINE L1 -8 6992 616 6 676 22 35 0 0 chr12 11975620 11975649 -109281881 + AT_rich Low_complexity Low_complexity 1 29 0 6 676 398 53 0 17 chr12 11975738 11975796 -109281734 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 676 317 186 13 91 chr12 11976495 11976572 -109280958 + RLTR25A LTR ERVK 513 583 -520 6 676 702 102 0 39 chr12 11976503 11976594 -109280936 + B1_Mus2 SINE Alu 46 135 -12 6 676 189 0 0 0 chr12 11976594 11976615 -109280915 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 676 506 95 129 45 chr12 11976758 11976890 -109280640 - Lx9 LINE L1 -7 7637 7495 6 676 452 266 126 50 chr12 11976911 11977093 -109280437 - B3A SINE B2 0 198 3 6 676 5699 37 0 0 chr12 11977277 11977953 -109279577 - L1Md_A LINE L1 -1 6581 5906 6 676 8679 69 0 2 chr12 11977954 11979675 -109277855 + L1Md_Gf LINE L1 591 2405 -3481 6 676 1193 33 0 0 chr12 11980174 11980326 -109277204 - L1Md_F3 LINE L1 -536 6048 5897 6 676 4389 47 0 6 chr12 11980326 11980866 -109276664 + L1Md_F3 LINE L1 6043 6579 -5 6 676 352 277 160 6 chr12 11980902 11981058 -109276472 - L1MC4 LINE L1 -4175 2040 1861 6 676 25 0 0 0 chr12 11981149 11981174 -109276356 + AT_rich Low_complexity Low_complexity 1 25 0 6 676 976 143 0 132 chr12 11981229 11981502 -109276028 + Lx3_Mus LINE L1 6773 7009 0 6 676 23 0 0 0 chr12 11981534 11981557 -109275973 + AT_rich Low_complexity Low_complexity 1 23 0 6 676 240 195 26 34 chr12 11981841 11981958 -109275572 + CT-rich Low_complexity Low_complexity 4 119 0 6 676 623 97 18 0 chr12 11982079 11982192 -109275338 + Lx3_Mus LINE L1 6895 7009 0 6 676 715 268 45 0 chr12 11983432 11983611 -109273919 + MTD LTR MaLR 198 384 -35 6 676 782 220 293 4 chr12 11983614 11983864 -109273666 + RMER20B LTR ERVK 10 340 -287 6 676 261 0 0 0 chr12 11983864 11983893 -109273637 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 676 450 205 213 0 chr12 11983893 11983931 -109273599 + RMER20B LTR ERVK 341 378 -249 6 676 4011 52 8 0 chr12 11984074 11984571 -109272959 - L1Md_F2 LINE L1 -3 6579 6079 6 676 1482 86 0 0 chr12 11984571 11984805 -109272725 + L1_Mm LINE L1 1946 2179 -3704 6 676 387 0 0 0 chr12 11985160 11985203 -109272327 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 676 289 224 35 0 chr12 11985570 11985655 -109271875 - Lx8 LINE L1 -2 7471 7384 6 676 527 276 48 0 chr12 11985748 11985893 -109271637 - Lx8 LINE L1 -275 7198 7047 6 676 578 172 0 11 chr12 11985930 11986112 -109271418 + CT-rich Low_complexity Low_complexity 1 180 0 6 676 441 0 0 0 chr12 11986120 11986169 -109271361 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 676 533 357 46 71 chr12 11987158 11987526 -109270004 + ORR1E LTR MaLR 1 359 0 6 676 237 344 146 12 chr12 11987634 11987799 -109269731 - L2 LINE L2 -558 2861 2675 6 676 1979 74 41 0 chr12 11989308 11989578 -109267952 - L1_Mus2 LINE L1 0 6566 6286 6 676 610 400 53 29 chr12 11989607 11989983 -109267547 + LTR40a LTR ERVL 67 451 -68 6 676 228 268 242 20 chr12 11990075 11990174 -109267356 - MIR3 SINE MIR -7 201 81 6 676 1734 209 29 21 chr12 11991637 11992018 -109265512 + ORR1C2 LTR MaLR 1 384 0 6 676 596 288 122 55 chr12 11992068 11992528 -109265002 - L1MA10 LINE L1 -3 6331 5841 6 676 319 298 16 53 chr12 11992520 11992708 -109264822 + L1M3 LINE L1 5456 5636 -532 6 676 25 0 0 0 chr12 11992708 11992733 -109264797 + AT_rich Low_complexity Low_complexity 1 25 0 6 676 31059 84 14 6 chr12 11992737 11997872 -109259658 + L1Md_A LINE L1 418 5615 -697 6 676 7491 70 1 21 chr12 11997872 11998887 -109258643 + L1Md_F2 LINE L1 5588 6582 0 6 676 1330 261 65 10 chr12 11998887 11999021 -109258509 + L1Md_A LINE L1 5616 5776 -536 6 676 1212 238 70 23 chr12 12000342 12000773 -109256757 + L1MA5A LINE L1 5490 5940 -357 1 676 502 273 118 29 chr12 12001842 12002012 -109255518 + MTD LTR MaLR 3 187 -232 2 676 312 27 0 0 chr12 12002809 12002846 -109254684 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 676 957 59 152 6 chr12 12003022 12003193 -109254337 - L1_Mus3 LINE L1 0 6638 6443 4 676 359 325 44 38 chr12 12003199 12003359 -109254171 - B4A SINE B4 -118 174 14 5 676 276 232 0 0 chr12 12003590 12003689 -109253841 + (CATATA)n Simple_repeat Simple_repeat 1 99 0 6 676 5278 38 3 3 chr12 12004329 12004967 -109252563 + L1Md_F3 LINE L1 5947 6584 0 7 676 669 63 0 0 chr12 12005589 12005684 -109251846 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 8 676 278 257 81 89 chr12 12006599 12007199 -109250331 + L1M5 LINE L1 4705 5296 -850 9 676 1167 253 115 16 chr12 12007976 12008342 -109249188 + MTC LTR MaLR 20 421 0 1 676 197 155 47 23 chr12 12010069 12010155 -109247375 + T-rich Low_complexity Low_complexity 3 90 0 1 676 1471 33 0 0 chr12 12010537 12010721 -109246809 - L1Md_T LINE L1 -200 6382 6199 1 676 1656 44 0 0 chr12 12010721 12010924 -109246606 + L1Md_T LINE L1 6380 6582 0 1 676 3973 38 4 0 chr12 12011398 12011877 -109245653 + L1Md_F2 LINE L1 6091 6571 -11 1 676 484 286 21 7 chr12 12012126 12012267 -109245263 - MLT1D LTR MaLR -3 502 360 1 676 250 359 62 53 chr12 12012570 12012779 -109244751 - MLT1D LTR MaLR -294 211 1 1 676 683 262 30 51 chr12 12012894 12013087 -109244443 + ORR1D2 LTR MaLR 1 189 -181 1 676 2619 147 7 2 chr12 12013087 12013518 -109244012 + BGLII_B LTR ERVK 1 433 -8 1 676 767 225 52 6 chr12 12013523 12013697 -109243833 + ORR1D2 LTR MaLR 186 367 -3 1 676 208 191 24 0 chr12 12014639 12014681 -109242849 + T-rich Low_complexity Low_complexity 2 44 0 1 676 439 264 9 9 chr12 12014937 12015048 -109242482 - MTEa LTR MaLR -8 371 261 1 676 604 336 23 28 chr12 12015152 12015185 -109242345 - B3 SINE B2 0 216 187 1 676 192 40 0 0 chr12 12015185 12015210 -109242320 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 676 759 326 1 1 chr12 12015210 12015393 -109242137 - B3A SINE B2 -30 186 1 1 676 429 149 68 5 chr12 12015724 12015946 -109241584 + (CA)n Simple_repeat Simple_repeat 1 236 0 2 676 229 308 0 37 chr12 12016319 12016400 -109241130 - MLT1A1 LTR MaLR -39 369 292 2 676 315 248 85 18 chr12 12016714 12016878 -109240652 + L1MC5 LINE L1 7351 7525 -436 2 676 215 225 0 14 chr12 12017107 12017179 -109240351 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 676 244 352 86 0 chr12 12019352 12019480 -109238050 + L4 LINE RTE 324 462 -1567 2 676 1073 275 61 94 chr12 12020877 12021367 -109236163 + RMER1B Other Other 44 517 -549 2 676 2349 273 130 25 chr12 12021404 12022315 -109235215 + RMER1A Other Other 8 1333 -9 2 676 764 313 179 38 chr12 12022332 12022750 -109234780 + MLT1E1A LTR MaLR 1 477 -147 2 676 403 337 115 44 chr12 12022883 12023339 -109234191 + MLT1E1A-int LTR MaLR 12 621 -750 2 676 656 321 109 124 chr12 12023356 12023877 -109233653 - MER70B LTR ERVL 0 578 59 2 676 1841 31 0 5 chr12 12023877 12024101 -109233429 + L1Md_F3 LINE L1 6362 6584 0 3 676 656 321 109 124 chr12 12024101 12024166 -109233364 - MER70B LTR ERVL -520 58 1 2 676 263 275 42 52 chr12 12024870 12024966 -109232564 - MER70B LTR ERVL -462 116 22 3 676 225 0 0 0 chr12 12025023 12025048 -109232482 + (A)n Simple_repeat Simple_repeat 1 25 0 3 676 28 0 0 0 chr12 12025820 12025848 -109231682 + AT_rich Low_complexity Low_complexity 1 28 0 3 676 553 134 0 2 chr12 12026325 12026423 -109231107 + Lx2 LINE L1 5526 5622 -264 3 676 522 145 0 0 chr12 12026423 12026547 -109230983 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 3 676 4997 166 27 5 chr12 12026560 12027481 -109230049 + Lx2 LINE L1 5617 6557 -440 3 676 410 162 0 0 chr12 12027481 12027555 -109229975 + RCHARR1 DNA MER1_type 427 500 -474 3 676 1136 238 91 3 chr12 12027567 12027896 -109229634 + RCHARR1 DNA MER1_type 562 919 -55 3 676 798 168 0 39 chr12 12028484 12028639 -109228891 + B1_Mur4 SINE Alu 2 150 0 3 676 1825 97 4 4 chr12 12031538 12031798 -109225732 + L1_Mus2 LINE L1 6307 6566 0 3 676 23 54 0 0 chr12 12032235 12032272 -109225258 + AT_rich Low_complexity Low_complexity 1 37 0 3 676 302 316 79 18 chr12 12035178 12035458 -109222072 + L1_Mur3 LINE L1 3160 3456 -2424 4 676 733 301 92 20 chr12 12035495 12035746 -109221784 + B4A SINE B4 17 285 -7 4 676 224 209 0 0 chr12 12036723 12036766 -109220764 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 676 180 0 0 0 chr12 12037463 12037483 -109220047 + (A)n Simple_repeat Simple_repeat 1 20 0 4 676 638 298 121 31 chr12 12037645 12037901 -109219629 + B4A SINE B4 2 280 -12 4 676 450 0 0 0 chr12 12038291 12038341 -109219189 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 676 306 0 0 0 chr12 12038573 12038607 -109218923 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 676 460 303 44 38 chr12 12038847 12039166 -109218364 - L1M2 LINE L1 -697 5606 5286 4 676 309 256 10 82 chr12 12039320 12039418 -109218112 - L1M2 LINE L1 -895 5248 5158 4 676 1040 129 0 0 chr12 12039427 12039582 -109217948 + RLTR24 LTR ERV1 1 155 -374 4 676 365 280 43 11 chr12 12039920 12040014 -109217516 + B4A SINE B4 2 98 -194 4 676 344 333 55 94 chr12 12040014 12040122 -109217408 + B3A SINE B2 2 195 -3 5 676 21 0 0 0 chr12 12040122 12040143 -109217387 + AT_rich Low_complexity Low_complexity 1 21 0 5 676 965 319 9 49 chr12 12040919 12041248 -109216282 - MLT2D LTR ERVL -80 334 19 5 676 312 352 48 7 chr12 12041806 12041952 -109215578 - MIRc SINE MIR -32 236 85 5 676 7629 52 1 3 chr12 12043099 12044539 -109212991 - L1Md_F2 LINE L1 0 6582 5144 5 676 186 386 107 6 chr12 12044630 12044807 -109212723 - MIRb SINE MIR -72 196 2 5 676 254 359 0 0 chr12 12045339 12045431 -109212099 - RMER15 LTR ERVL -111 464 373 5 676 228 297 14 0 chr12 12045489 12045563 -109211967 + Lx8 LINE L1 7050 7124 -349 5 676 837 299 53 10 chr12 12045577 12045881 -109211649 - Lx8 LINE L1 -446 7027 6711 5 676 1683 201 69 9 chr12 12045881 12046213 -109211317 + ORR1D1 LTR MaLR 18 369 -5 5 676 1183 259 87 18 chr12 12046217 12046598 -109210932 - Lx8 LINE L1 -754 6719 6313 5 676 2485 228 43 24 chr12 12046854 12047613 -109209917 + Lx4B LINE L1 6183 6973 -27 6 676 1626 29 19 5 chr12 12048348 12048554 -109208976 + L1Md_F3 LINE L1 6376 6584 0 6 676 259 192 9 80 chr12 12048795 12048908 -109208622 - RMER17C LTR ERVK -149 261 157 6 676 640 253 86 6 chr12 12048910 12049085 -109208445 + Lx8 LINE L1 6230 6418 -1055 6 676 239 336 73 22 chr12 12049501 12049638 -109207892 - B1F SINE Alu -5 144 1 6 676 1672 205 207 0 chr12 12050577 12050926 -109206604 - MTC LTR MaLR 0 421 1 6 676 2346 207 109 22 chr12 12050926 12051671 -109205859 - MTC-int LTR MaLR 0 1258 1 6 676 6336 21 1 0 chr12 12052455 12053175 -109204355 - L1Md_F2 LINE L1 -15 6567 5847 6 676 252 0 0 0 chr12 12054038 12054066 -109203464 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 676 300 70 0 0 chr12 12054066 12054108 -109203422 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 676 769 190 0 11 chr12 12054117 12054293 -109203237 + CT-rich Low_complexity Low_complexity 1 174 0 6 676 529 83 0 20 chr12 12054915 12055013 -109202517 - L1Md_F2 LINE L1 0 6582 6487 7 676 267 54 0 0 chr12 12055168 12055205 -109202325 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 676 309 308 0 0 chr12 12055238 12055303 -109202227 - B4A SINE B4 -5 287 223 7 676 453 273 40 34 chr12 12055400 12055548 -109201982 - B1F2 SINE Alu 0 149 1 7 676 716 160 212 16 chr12 12056692 12056876 -109200654 - URR1B DNA MER1_type -3 222 3 7 676 597 296 44 11 chr12 12057533 12057714 -109199816 + B3 SINE B2 2 188 -28 7 676 333 0 0 0 chr12 12057714 12057751 -109199779 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 676 948 263 17 0 chr12 12057955 12058187 -109199343 + Lx6 LINE L1 7199 7434 -26 7 676 322 248 79 0 chr12 12058231 12058332 -109199198 - Lx8 LINE L1 -1067 6406 6298 7 84 1406 143 47 33 chr12 12058348 12058642 -109198888 + MT2B2 LTR ERVL 202 584 0 7 677 1603 179 62 0 chr12 12058685 12059038 -109198492 - Lx9 LINE L1 -3 7641 7267 8 677 2112 215 25 43 chr12 12059035 12059565 -109197965 - Lx9 LINE L1 -547 7097 6578 8 677 698 87 10 0 chr12 12059572 12059675 -109197855 + (GGAA)n Simple_repeat Simple_repeat 2 105 0 8 677 307 360 106 53 chr12 12059887 12060545 -109196985 - L1M5 LINE L1 -749 5397 4705 8 677 30149 86 9 8 chr12 12060603 12065790 -109191740 + L1Md_F2 LINE L1 392 5585 -298 8 677 7671 71 1 5 chr12 12065791 12066782 -109190748 + L1Md_F2 LINE L1 5587 6573 -9 8 677 868 80 0 16 chr12 12066815 12066942 -109190588 + L1_Mus2 LINE L1 6433 6557 -9 8 677 1227 115 69 26 chr12 12067592 12067825 -109189705 + Lx LINE L1 6412 6654 0 8 677 2108 156 30 0 chr12 12067845 12068248 -109189282 + L1_Mur2 LINE L1 4882 5296 -581 8 677 4344 117 87 11 chr12 12068242 12069004 -109188526 - L1_Mur2 LINE L1 -297 5580 4761 8 677 936 155 11 11 chr12 12069004 12069187 -109188343 + Lx4B LINE L1 6871 7053 -5 8 677 1095 213 14 0 chr12 12069832 12070053 -109187477 + URR1A DNA MER1_type 3 226 0 8 677 312 338 68 34 chr12 12071456 12071661 -109185869 - L1M5 LINE L1 -1253 4893 4682 9 677 506 179 134 0 chr12 12072129 12072241 -109185289 + B1_Mus2 SINE Alu 9 135 -12 9 677 964 122 0 12 chr12 12072241 12072407 -109185123 + (GAAA)n Simple_repeat Simple_repeat 1 164 0 9 677 977 162 34 24 chr12 12072575 12072784 -109184746 - Lx LINE L1 -1 6653 6443 9 677 6925 119 16 8 chr12 12072784 12074177 -109183353 - Lx LINE L1 -381 6273 4869 9 677 258 32 0 0 chr12 12074177 12074208 -109183322 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 9 677 6925 151 31 1 chr12 12074208 12074455 -109183075 - Lx LINE L1 -1015 4868 4606 9 677 531 317 72 101 chr12 12074616 12075268 -109182262 + L1MB8 LINE L1 5533 6165 -13 9 677 214 256 6 60 chr12 12075990 12076173 -109181357 + (CCCTAA)n Simple_repeat Simple_repeat 5 177 0 9 677 521 313 138 31 chr12 12076266 12076520 -109181010 + B4 SINE B4 12 292 0 9 677 430 288 9 26 chr12 12076733 12076847 -109180683 - ID_B1 SINE B4 -3 221 110 9 677 29916 98 17 6 chr12 12076858 12082963 -109174567 + L1_Mus1 LINE L1 392 6567 0 9 677 1226 111 17 0 chr12 12084074 12084255 -109173275 + B2_Mm1t SINE B2 2 185 -8 1 677 216 0 0 0 chr12 12084258 12084282 -109173248 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 1 677 5471 107 39 8 chr12 12084840 12085709 -109171821 - L1_Mus3 LINE L1 -39 6599 5704 1 677 2579 101 19 0 chr12 12085705 12086082 -109171448 + L1_Mus3 LINE L1 5318 5701 -182 1 677 645 295 91 16 chr12 12086334 12086520 -109171010 - MTD LTR MaLR -146 273 74 1 677 3847 98 5 0 chr12 12086520 12087256 -109170274 + L1_Mus4 LINE L1 5401 6140 -496 1 677 3996 146 48 3 chr12 12087254 12087990 -109169540 + L1_Mur2 LINE L1 4294 5062 -815 1 677 417 123 0 0 chr12 12088382 12088447 -109169083 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 677 208 204 0 22 chr12 12088447 12088492 -109169038 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 677 189 74 0 0 chr12 12088492 12088519 -109169011 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 677 468 230 0 0 chr12 12088798 12088933 -109168597 + (TATG)n Simple_repeat Simple_repeat 2 136 0 1 677 646 269 0 0 chr12 12088941 12089090 -109168440 - B1F SINE Alu 0 149 1 1 677 4646 123 4 3 chr12 12090616 12091358 -109166172 - L1_Mm LINE L1 -108 5775 5033 1 677 2310 112 3 0 chr12 12091355 12091713 -109165817 + L1_Mm LINE L1 4204 4562 -1321 1 677 496 144 0 0 chr12 12091710 12091800 -109165730 + L1_Mur1 LINE L1 4953 5042 -844 1 677 1351 132 0 33 chr12 12091940 12092183 -109165347 - L1_Mm LINE L1 -924 4959 4725 1 677 366 297 108 20 chr12 12092183 12092434 -109165096 + Charlie1a DNA MER1_type 1066 1338 -117 1 677 316 292 155 42 chr12 12096228 12096396 -109161134 - B4A SINE B4 -4 288 102 1 677 652 256 75 45 chr12 12096430 12096630 -109160900 - B3A SINE B2 -3 213 8 1 677 24 0 0 0 chr12 12096769 12096793 -109160737 + AT_rich Low_complexity Low_complexity 1 24 0 1 677 24 0 0 0 chr12 12097013 12097037 -109160493 + AT_rich Low_complexity Low_complexity 1 24 0 1 677 1011 25 0 0 chr12 12097307 12097427 -109160103 - B1_Mm SINE Alu -9 138 19 1 677 866 141 223 21 chr12 12097696 12097884 -109159646 - URR1A DNA MER1_type 0 226 1 1 677 186 189 0 0 chr12 12098634 12098671 -109158859 + GA-rich Low_complexity Low_complexity 3 39 0 1 677 357 267 49 10 chr12 12098945 12099047 -109158483 - LTR40b LTR ERVL -12 450 345 1 677 33943 46 0 3 chr12 12099321 12104807 -109152723 + L1Md_T LINE L1 26 5589 -297 1 677 8575 28 0 0 chr12 12104807 12105803 -109151727 + L1Md_T LINE L1 5590 6585 0 1 677 356 328 0 14 chr12 12106873 12107012 -109150518 - HERVL40-int LTR ERVL -949 4581 4445 1 677 762 198 17 36 chr12 12107015 12107220 -109150310 + B3 SINE B2 1 192 -3 1 677 496 320 11 0 chr12 12107469 12107647 -109149883 - HERVL40-int LTR ERVL -1418 4112 3933 1 677 339 25 0 0 chr12 12108020 12108060 -109149470 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 677 471 333 50 0 chr12 12108084 12108204 -109149326 - RSINE1 SINE B4 -27 138 13 1 677 1222 221 109 12 chr12 12108622 12108961 -109148569 - ORR1D1 LTR MaLR 0 374 3 1 677 22 0 0 0 chr12 12109032 12109054 -109148476 + AT_rich Low_complexity Low_complexity 1 22 0 1 677 567 143 0 71 chr12 12109055 12109153 -109148377 - B1_Mus2 SINE Alu -1 146 56 1 677 315 0 0 0 chr12 12109325 12109360 -109148170 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 677 448 259 43 26 chr12 12109562 12109677 -109147853 - PB1D10 SINE Alu 0 117 1 1 677 325 338 55 55 chr12 12110677 12110840 -109146690 + B4A SINE B4 124 286 -6 1 677 570 109 0 0 chr12 12110893 12110994 -109146536 + (CATA)n Simple_repeat Simple_repeat 2 102 0 1 677 484 244 0 0 chr12 12113542 12113632 -109143898 + 5S rRNA rRNA 1 90 -31 1 677 282 324 33 58 chr12 12113793 12114068 -109143462 - L1M2 LINE L1 -788 5355 5088 1 677 5032 35 0 0 chr12 12114747 12115339 -109142191 + L1Md_T LINE L1 5991 6582 0 1 677 721 113 22 8 chr12 12115542 12115676 -109141854 + Lx3_Mus LINE L1 5948 6083 -926 1 677 3054 86 14 0 chr12 12115937 12116378 -109141152 + Lx3_Mus LINE L1 6104 6550 -459 1 677 2260 107 56 6 chr12 12116378 12116736 -109140794 + Lx LINE L1 6279 6654 0 1 677 205 197 16 32 chr12 12116736 12116799 -109140731 + A-rich Low_complexity Low_complexity 1 62 0 1 677 1589 195 35 62 chr12 12116800 12117254 -109140276 - L1_Rod LINE L1 -317 5530 5089 1 677 240 111 0 0 chr12 12117273 12117318 -109140212 + (A)n Simple_repeat Simple_repeat 1 45 0 1 677 737 198 0 62 chr12 12117326 12117504 -109140026 - L1_Rod LINE L1 -1659 4188 4022 1 677 1896 235 25 109 chr12 12117818 12118254 -109139276 - L1_Rod LINE L1 -1898 3949 3578 1 677 1293 83 0 0 chr12 12118254 12118434 -109139096 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 677 1896 235 25 109 chr12 12118434 12118822 -109138708 - L1_Rod LINE L1 -2270 3577 3194 1 677 196 203 52 32 chr12 12118824 12118905 -109138625 - MIR SINE MIR -94 168 90 1 677 1397 271 93 33 chr12 12118935 12119485 -109138045 + RLTR22_Mur LTR ERVK 1 583 -1265 1 677 261 75 0 0 chr12 12119560 12119600 -109137930 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 1 677 519 236 82 91 chr12 12120299 12120518 -109137012 + RLTR22_Mur LTR ERVK 605 821 -1027 1 677 613 212 114 12 chr12 12120527 12120694 -109136836 + RLTR22_Mur LTR ERVK 1068 1251 -597 1 677 5967 49 19 5 chr12 12120694 12121447 -109136083 - L1Md_F2 LINE L1 0 6582 5820 1 677 597 28 0 0 chr12 12121954 12122025 -109135505 + (TTG)n Simple_repeat Simple_repeat 2 72 0 1 677 306 239 30 0 chr12 12122783 12122850 -109134680 + RSINE1 SINE B4 20 88 -77 1 677 410 247 47 24 chr12 12122889 12123059 -109134471 - L1M3 LINE L1 -838 5302 5129 1 677 557 247 44 24 chr12 12123095 12123344 -109134186 + L1M3 LINE L1 4311 4564 -1576 1 677 412 125 21 0 chr12 12123346 12123442 -109134088 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 1 677 632 264 0 63 chr12 12123505 12123663 -109133867 + B1F SINE Alu 2 149 0 1 677 2494 188 97 9 chr12 12123667 12124225 -109133305 + L1VL2 LINE L1 284 890 -5445 1 677 1609 83 24 8 chr12 12124224 12124478 -109133052 - Lx2 LINE L1 -1076 5921 5664 1 677 4311 160 11 8 chr12 12124479 12125236 -109132294 + Lx LINE L1 5894 6652 -2 1 677 23700 160 14 4 chr12 12125258 12127154 -109130376 + Lx2 LINE L1 1182 3110 -2776 1 677 2620 64 0 0 chr12 12127154 12127484 -109130046 + IAPEY3_LTR LTR ERVK 3 332 0 1 677 23700 158 19 6 chr12 12127484 12131332 -109126198 + Lx2 LINE L1 3111 6997 0 1 677 22 0 0 0 chr12 12131337 12131359 -109126171 + AT_rich Low_complexity Low_complexity 1 22 0 1 677 554 298 50 19 chr12 12131456 12131819 -109125711 + L1M3 LINE L1 4728 5101 -1039 1 677 1273 239 80 67 chr12 12133366 12133526 -109124004 + MTE2a LTR MaLR 2 162 -217 1 677 881 153 191 0 chr12 12133526 12133715 -109123815 + URR1B DNA MER1_type 1 225 0 1 677 1273 239 80 67 chr12 12133715 12133927 -109123603 + MTE2a LTR MaLR 163 379 0 1 677 19546 80 6 1 chr12 12135623 12138417 -109119113 + L1Md_F2 LINE L1 2777 5585 -298 1 677 7573 74 0 8 chr12 12138418 12139421 -109118109 + L1Md_F2 LINE L1 5587 6581 -1 1 677 1491 315 65 58 chr12 12139422 12140143 -109117387 - Lx8 LINE L1 -856 6617 5872 1 677 423 0 0 0 chr12 12140143 12140190 -109117340 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 677 225 0 0 0 chr12 12140190 12140214 -109117316 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 677 1491 289 26 74 chr12 12140214 12140676 -109116854 - Lx8 LINE L1 -1602 5871 5442 1 677 265 302 82 44 chr12 12141022 12141157 -109116373 + MER31B LTR ERV1 12 151 -315 1 677 294 106 0 0 chr12 12142039 12142086 -109115444 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 677 684 24 0 0 chr12 12142086 12142167 -109115363 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 677 252 182 15 29 chr12 12142285 12142353 -109115177 + L1MC5 LINE L1 7846 7912 -49 1 677 3003 81 30 0 chr12 12142370 12142805 -109114725 - Lx3_Mus LINE L1 -478 6531 6084 1 677 3962 64 11 35 chr12 12143226 12143775 -109113755 + L1Md_F2 LINE L1 6047 6582 0 1 677 547 248 85 0 chr12 12145069 12145198 -109112332 + B1_Mur2 SINE Alu 3 142 -7 1 677 482 333 30 0 chr12 12145208 12145343 -109112187 + B1_Mm SINE Alu 9 147 0 1 677 198 118 0 0 chr12 12145354 12145388 -109112142 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1 677 1021 92 11 17 chr12 12145399 12145575 -109111955 + (GAGAA)n Simple_repeat Simple_repeat 5 179 0 1 677 204 40 0 0 chr12 12145646 12145671 -109111859 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 677 209 278 0 18 chr12 12145672 12145727 -109111803 + CT-rich Low_complexity Low_complexity 2 55 0 1 677 194 62 31 0 chr12 12146183 12146215 -109111315 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 1 677 966 300 43 80 chr12 12147504 12147780 -109109750 - ORR1E LTR MaLR 0 359 83 1 677 1362 134 54 0 chr12 12147780 12148019 -109109511 + Lx LINE L1 6402 6653 -1 1 677 966 300 43 80 chr12 12148019 12148115 -109109415 - ORR1E LTR MaLR -277 82 1 1 677 296 371 86 70 chr12 12148700 12149199 -109108331 - MLT1G1 LTR MaLR -16 563 57 1 677 306 0 0 0 chr12 12149237 12149271 -109108259 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 677 251 340 21 11 chr12 12149296 12149391 -109108139 - RSINE1 SINE B4 -62 103 8 1 677 198 0 0 0 chr12 12149689 12149711 -109107819 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 677 199 325 34 26 chr12 12150998 12151115 -109106415 - L2a LINE L2 -101 3325 3208 1 677 428 212 29 0 chr12 12151165 12151302 -109106228 + (TATG)n Simple_repeat Simple_repeat 2 142 0 1 677 966 179 61 9 chr12 12151333 12151547 -109105983 + URR1A DNA MER1_type 2 226 0 1 677 186 43 0 0 chr12 12152511 12152534 -109104996 + (A)n Simple_repeat Simple_repeat 1 23 0 1 677 2100 56 8 0 chr12 12152556 12152822 -109104708 - L1Md_F2 LINE L1 -12 6570 6303 1 677 439 299 8 17 chr12 12152902 12153021 -109104509 - MLT1A1 LTR MaLR -12 396 279 1 677 440 208 0 0 chr12 12153034 12153111 -109104419 - B3A SINE B2 -117 81 5 1 677 1056 164 124 0 chr12 12153113 12153314 -109104216 - URR1A DNA MER1_type 0 226 1 1 677 255 61 0 0 chr12 12153650 12153683 -109103847 + (T)n Simple_repeat Simple_repeat 1 33 0 1 677 512 283 12 81 chr12 12154926 12155099 -109102431 + B3A SINE B2 38 198 0 1 677 196 243 13 13 chr12 12155244 12155319 -109102211 + GA-rich Low_complexity Low_complexity 1 75 0 1 677 528 106 75 0 chr12 12155356 12155517 -109102013 + (TCTA)n Simple_repeat Simple_repeat 3 175 0 1 677 385 351 155 21 chr12 12155602 12155931 -109101599 - MER44D DNA MER2_type -301 404 32 1 677 436 228 7 21 chr12 12157027 12157167 -109100363 + Lx4B LINE L1 861 990 -6096 1 677 3238 166 39 161 chr12 12157189 12158289 -109099241 + Lx4B LINE L1 2412 3377 -2509 1 677 3971 61 2 2 chr12 12158287 12158814 -109098716 + L1Md_F2 LINE L1 5060 5586 -297 1 677 7945 44 10 12 chr12 12158814 12159800 -109097730 + L1Md_F2 LINE L1 5587 6570 -12 1 677 2044 133 16 28 chr12 12159800 12160163 -109097367 + Lx4B LINE L1 3482 3840 -2037 1 677 691 172 0 0 chr12 12160164 12160292 -109097238 + L1Md_F2 LINE L1 210 337 -6282 2 677 32303 64 0 4 chr12 12160285 12164935 -109092595 + L1Md_F2 LINE L1 563 5306 -580 2 677 7257 58 0 0 chr12 12164935 12165841 -109091689 + L1Md_T LINE L1 5677 6582 0 2 677 32303 60 0 4 chr12 12165841 12166140 -109091390 + L1Md_F2 LINE L1 5307 5589 -297 2 677 8163 50 5 0 chr12 12166140 12167131 -109090399 + L1Md_F2 LINE L1 5590 6585 0 2 677 11811 133 35 18 chr12 12167131 12168843 -109088687 + Lx4B LINE L1 3838 5600 -277 1 677 1484 142 126 71 chr12 12168843 12169153 -109088377 - ORR1A4 LTR MaLR -2 327 1 2 677 11811 135 35 23 chr12 12169153 12169471 -109088059 + Lx4B LINE L1 5601 5909 -1149 1 677 3028 93 0 14 chr12 12169471 12169884 -109087646 - MTB_Mm LTR MaLR 0 407 1 2 677 6125 121 21 104 chr12 12169884 12169962 -109087568 - MTB_Mm-int LTR MaLR 0 1098 1050 2 677 1129 88 0 0 chr12 12169962 12170109 -109087421 - B1_Mus2 SINE Alu 0 147 1 2 677 6125 121 21 104 chr12 12170109 12171228 -109086302 - MTB_Mm-int LTR MaLR -49 1049 1 2 677 2846 95 30 8 chr12 12171232 12171626 -109085904 - MTB_Mm LTR MaLR -4 403 1 2 677 5305 156 25 84 chr12 12171626 12172382 -109085148 + Lx4B LINE L1 5910 6621 -437 1 677 24 96 0 0 chr12 12172523 12172596 -109084934 + AT_rich Low_complexity Low_complexity 1 73 0 2 677 419 136 25 0 chr12 12173329 12173410 -109084120 + (CATA)n Simple_repeat Simple_repeat 4 86 0 2 677 515 202 18 0 chr12 12173642 12173751 -109083779 + Charlie13b DNA Charlie 159 269 -243 2 677 2081 306 77 39 chr12 12174370 12175306 -109082224 + Lx8 LINE L1 6036 7007 -466 2 677 1185 41 0 7 chr12 12175705 12175853 -109081677 + B1_Mus1 SINE Alu 2 148 0 2 677 216 0 0 0 chr12 12176126 12176150 -109081380 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 2 677 274 291 0 46 chr12 12176201 12176309 -109081221 + A-rich Low_complexity Low_complexity 2 104 0 2 677 479 60 15 0 chr12 12176354 12176421 -109081109 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 2 677 199 295 75 67 chr12 12176604 12176724 -109080806 + MER5A DNA MER1_type 7 127 -62 2 677 360 321 73 0 chr12 12177077 12177186 -109080344 - Lx8 LINE L1 -142 7331 7215 2 677 246 324 74 20 chr12 12178129 12178277 -109079253 - L2 LINE L2 -640 2779 2624 2 677 1165 194 14 0 chr12 12178344 12178566 -109078964 + URR1A DNA MER1_type 1 225 -1 2 677 652 330 55 19 chr12 12180963 12181272 -109076258 + Lx8 LINE L1 7047 7366 -107 2 677 914 164 14 0 chr12 12181521 12181667 -109075863 + B1_Mur4 SINE Alu 1 148 -2 2 677 252 0 0 0 chr12 12183085 12183113 -109074417 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 677 1971 165 26 14 chr12 12183997 12184427 -109073103 - RMER10A LTR ERVL -5 437 3 2 677 392 296 69 23 chr12 12186867 12187085 -109070445 - MLT1C LTR MaLR -185 282 55 2 677 203 32 65 0 chr12 12187403 12187434 -109070096 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2 84 2346 223 8 18 chr12 12189567 12190074 -109067456 - Lx9 LINE L1 -576 7068 6567 2 678 300 191 0 0 chr12 12190085 12190148 -109067382 + Lx9 LINE L1 7574 7636 -8 2 678 202 284 75 64 chr12 12190157 12190251 -109067279 + MIRc SINE MIR 44 138 -130 2 678 2246 86 9 12 chr12 12190302 12190642 -109066888 + L1Md_F2 LINE L1 1269 1607 -4276 2 678 12963 69 0 1 chr12 12190638 12192292 -109065238 + L1Md_F2 LINE L1 3934 5586 -297 2 678 7572 70 17 4 chr12 12192293 12193272 -109064258 + L1Md_F2 LINE L1 5588 6579 -3 2 678 655 289 85 24 chr12 12193422 12193716 -109063814 - MLT1B LTR MaLR -73 317 6 2 678 858 188 12 0 chr12 12193945 12194187 -109063343 + CT-rich Low_complexity Low_complexity 1 245 0 2 678 876 178 0 0 chr12 12194214 12194394 -109063136 + CT-rich Low_complexity Low_complexity 1 180 0 2 678 804 185 0 0 chr12 12194409 12194571 -109062959 + CT-rich Low_complexity Low_complexity 1 162 0 2 678 35805 68 2 5 chr12 12194610 12200733 -109056797 - L1Md_F2 LINE L1 0 6585 388 2 678 1071 139 0 0 chr12 12200741 12200921 -109056609 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 678 186 133 0 0 chr12 12200921 12200951 -109056579 + (TCC)n Simple_repeat Simple_repeat 2 31 0 2 678 997 141 0 11 chr12 12200952 12201132 -109056398 + CT-rich Low_complexity Low_complexity 3 180 0 2 678 275 314 79 83 chr12 12202754 12203032 -109054498 + MLT1A0 LTR MaLR 88 364 -1 2 678 203 305 130 23 chr12 12203302 12203433 -109054097 + MER5B DNA MER1_type 10 154 -24 2 678 21 0 0 0 chr12 12203937 12203958 -109053572 + AT_rich Low_complexity Low_complexity 1 21 0 2 678 1120 214 85 11 chr12 12205015 12205285 -109052245 - ORR1C2 LTR MaLR 0 384 95 2 678 455 63 0 0 chr12 12205285 12205348 -109052182 - L1_Mus2 LINE L1 -425 6141 6079 2 678 1521 129 129 0 chr12 12205348 12205635 -109051895 + IAPEY3_LTR LTR ERVK 1 324 -8 2 678 636 94 0 0 chr12 12205637 12205722 -109051808 - L1_Mus2 LINE L1 -478 6088 6004 2 678 1973 88 11 0 chr12 12205715 12205989 -109051541 + L1_Mus2 LINE L1 6220 6496 -70 2 678 22 0 0 0 chr12 12206340 12206362 -109051168 + AT_rich Low_complexity Low_complexity 1 22 0 2 678 1050 104 0 0 chr12 12206898 12207052 -109050478 + (TTTCC)n Simple_repeat Simple_repeat 4 157 0 2 678 351 0 0 0 chr12 12207053 12207092 -109050438 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2 678 927 89 0 15 chr12 12207095 12207231 -109050299 - B1_Mus1 SINE Alu 0 148 15 2 678 379 297 188 25 chr12 12207526 12207771 -109049759 + L1MA5 LINE L1 5644 5909 -391 2 678 253 250 61 30 chr12 12208932 12209031 -109048499 + MTEa LTR MaLR 272 373 -6 2 678 1010 162 116 0 chr12 12209893 12210091 -109047439 - URR1B DNA MER1_type 0 225 5 2 678 4245 121 41 28 chr12 12212162 12212866 -109044664 - Lx4B LINE L1 -1 7057 6345 2 678 884 132 0 0 chr12 12213455 12213591 -109043939 - ORR1B2 LTR MaLR 0 367 232 2 678 366 179 0 0 chr12 12213588 12213655 -109043875 - ORR1B2 LTR MaLR -300 67 1 2 678 234 0 0 0 chr12 12214417 12214443 -109043087 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 678 1392 75 0 25 chr12 12214664 12214868 -109042662 + L1Md_F2 LINE L1 6382 6580 -2 2 678 27 0 0 0 chr12 12214934 12214961 -109042569 + AT_rich Low_complexity Low_complexity 1 27 0 2 678 548 283 81 28 chr12 12216606 12216817 -109040713 + ID_B1 SINE B4 3 224 0 2 678 283 212 24 0 chr12 12217657 12217742 -109039788 + GA-rich Low_complexity Low_complexity 2 88 0 2 678 302 0 26 0 chr12 12218028 12218066 -109039464 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 678 1059 54 0 0 chr12 12220734 12220881 -109036649 + (TG)n Simple_repeat Simple_repeat 2 148 0 2 678 285 98 0 0 chr12 12221023 12221064 -109036466 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 678 1239 170 0 63 chr12 12221257 12221496 -109036034 - URR1B DNA MER1_type 0 225 2 2 678 234 217 0 0 chr12 12222570 12222616 -109034914 + B2_Mm2 SINE B2 4 49 -146 2 678 5120 247 59 42 chr12 12222624 12224370 -109033160 - Lx9 LINE L1 -1 7643 5724 2 678 612 77 0 0 chr12 12224370 12224461 -109033069 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 678 3106 191 78 21 chr12 12224461 12225035 -109032495 - Lx9 LINE L1 -124 5723 5112 2 678 722 244 43 5 chr12 12225036 12225221 -109032309 + B3 SINE B2 25 216 0 2 678 360 0 0 0 chr12 12225715 12225755 -109031775 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 678 430 325 50 58 chr12 12225855 12226097 -109031433 + Lx8 LINE L1 7027 7266 -207 2 678 254 314 48 10 chr12 12226117 12226220 -109031310 + RMER15 LTR ERVL 466 572 -3 2 678 180 217 0 0 chr12 12227519 12227565 -109029965 + (CATG)n Simple_repeat Simple_repeat 3 48 0 2 678 232 108 62 75 chr12 12228189 12228349 -109029181 + CT-rich Low_complexity Low_complexity 4 161 0 2 678 516 322 7 27 chr12 12229153 12229303 -109028227 + B3 SINE B2 5 151 -65 2 678 360 0 0 0 chr12 12229315 12229355 -109028175 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 678 275 222 198 0 chr12 12230500 12230581 -109026949 + PB1D10 SINE Alu 16 112 -5 2 678 618 311 27 32 chr12 12231109 12231328 -109026202 + B4A SINE B4 29 246 -46 2 678 1697 136 9 68 chr12 12231328 12231652 -109025878 + Lx3C LINE L1 6664 6968 -8 2 678 510 31 0 0 chr12 12231695 12231759 -109025771 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 678 1870 61 24 8 chr12 12232057 12232304 -109025226 + L1_Mus1 LINE L1 6317 6567 0 2 678 1231 61 0 0 chr12 12233098 12233246 -109024284 + B1_Mus1 SINE Alu 1 148 0 2 678 209 292 90 23 chr12 12233765 12233898 -109023632 - L3 LINE CR1 -10 4479 4338 2 678 430 324 59 11 chr12 12233962 12234149 -109023381 - MIR SINE MIR -66 196 1 2 678 756 213 207 0 chr12 12234607 12234781 -109022749 + B3 SINE B2 1 210 -6 2 678 542 159 9 0 chr12 12234782 12234889 -109022641 + GA-rich Low_complexity Low_complexity 1 108 0 2 678 227 305 34 123 chr12 12235272 12235564 -109021966 + L2 LINE L2 2399 2664 -755 2 678 495 0 0 0 chr12 12235631 12235686 -109021844 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 678 217 341 0 0 chr12 12235697 12235782 -109021748 + L2 LINE L2 2776 2860 -559 2 678 593 154 0 82 chr12 12236077 12236213 -109021317 + B1_Mur3 SINE Alu 25 148 -1 2 678 1078 261 60 32 chr12 12236312 12236681 -109020849 + MTE2a LTR MaLR 1 379 0 2 678 493 306 135 103 chr12 12237003 12237448 -109020082 + MLT1D-int LTR MaLR 961 1480 -9 2 678 250 169 31 0 chr12 12237580 12237645 -109019885 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2 678 402 314 29 17 chr12 12237815 12237987 -109019543 + MLT1D LTR MaLR 330 503 -2 2 678 230 286 31 62 chr12 12238223 12238320 -109019210 + HAL1 LINE L1 1 94 -2413 2 678 1120 88 0 7 chr12 12238333 12238482 -109019048 + B1_Mus1 SINE Alu 1 148 0 2 678 253 283 117 21 chr12 12238888 12238982 -109018548 - ORR1E LTR MaLR -250 109 7 2 678 267 325 31 23 chr12 12238986 12239115 -109018415 - MLT1G1 LTR MaLR -371 208 79 2 678 278 253 96 0 chr12 12239271 12239354 -109018176 + MLT1B LTR MaLR 1 91 -299 2 678 1398 279 16 13 chr12 12239356 12239734 -109017796 - MTE2a LTR MaLR 0 379 1 2 678 363 274 44 32 chr12 12239734 12239892 -109017638 + MLT1B LTR MaLR 230 389 -1 2 678 369 267 87 57 chr12 12240091 12240360 -109017170 + B4 SINE B4 6 274 -18 2 678 1623 247 21 42 chr12 12240361 12240788 -109016742 - MTD LTR MaLR 0 419 2 2 678 261 0 0 0 chr12 12240797 12240826 -109016704 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 678 954 209 266 3 chr12 12240887 12241180 -109016350 - ORR1D1 LTR MaLR 0 374 5 2 678 259 157 43 0 chr12 12241725 12241795 -109015735 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 678 631 337 82 51 chr12 12242350 12242863 -109014667 + MER74A LTR ERVL 13 541 -17 2 678 870 312 24 7 chr12 12242892 12243179 -109014351 + B4A SINE B4 1 292 0 2 678 243 133 26 39 chr12 12243196 12243274 -109014256 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 2 678 222 62 0 0 chr12 12243340 12243372 -109014158 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 678 189 0 0 0 chr12 12243707 12243728 -109013802 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 678 495 0 0 0 chr12 12243728 12243782 -109013748 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 678 323 333 0 0 chr12 12245195 12245300 -109012230 + (TG)n Simple_repeat Simple_repeat 1 105 0 3 678 24 32 0 0 chr12 12245956 12245987 -109011543 + AT_rich Low_complexity Low_complexity 1 31 0 3 678 390 313 24 30 chr12 12246403 12246571 -109010959 + Charlie17a DNA MER1_type 49 215 -4 3 678 586 308 112 37 chr12 12247263 12247665 -109009865 - MER74A LTR ERVL -124 434 3 3 678 446 106 21 31 chr12 12247759 12247856 -109009674 - Lx3_Mus LINE L1 -48 6961 6866 3 678 4091 199 80 30 chr12 12248131 12249045 -109008485 - RMER1B Other Other 0 1066 107 3 678 687 182 338 0 chr12 12249201 12249355 -109008175 + B3 SINE B2 2 207 -9 3 678 294 224 59 30 chr12 12249384 12249485 -109008045 + Lx6 LINE L1 7308 7411 -49 3 678 1706 174 59 57 chr12 12249485 12249856 -109007674 + ORR1C1 LTR MaLR 7 378 0 3 678 753 264 62 20 chr12 12249963 12250207 -109007323 + MLT1E2 LTR MaLR 369 622 -5 3 678 201 132 0 0 chr12 12250331 12250369 -109007161 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 3 678 219 114 0 0 chr12 12250426 12250461 -109007069 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 678 201 138 0 0 chr12 12251240 12251269 -109006261 + (TCTCC)n Simple_repeat Simple_repeat 4 32 0 3 678 414 179 0 0 chr12 12252600 12252695 -109004835 + (TGG)n Simple_repeat Simple_repeat 2 96 0 3 678 221 105 33 50 chr12 12254021 12254081 -109003449 + (GTTTG)n Simple_repeat Simple_repeat 1 59 0 3 678 1133 76 0 14 chr12 12254081 12254228 -109003302 - B1_Mus1 SINE Alu -1 147 3 3 678 210 71 0 0 chr12 12254403 12254431 -109003099 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 3 678 205 211 0 0 chr12 12255278 12255316 -109002214 + A-rich Low_complexity Low_complexity 1 38 0 3 678 891 98 0 0 chr12 12256080 12256212 -109001318 + (TC)n Simple_repeat Simple_repeat 2 133 0 3 678 225 149 41 41 chr12 12256734 12256783 -109000747 + L1_Mm LINE L1 3408 3456 -2427 3 678 1905 146 90 0 chr12 12257051 12257386 -109000144 - ORR1B2 LTR MaLR 0 367 3 3 678 232 185 79 40 chr12 12257647 12257763 -108999767 + L1MCa LINE L1 287 361 -6390 3 678 330 272 0 28 chr12 12258581 12258687 -108998843 + MLT1A0 LTR MaLR 263 365 0 3 678 737 228 108 0 chr12 12258924 12259091 -108998439 + B3 SINE B2 1 185 -31 3 678 480 111 0 0 chr12 12259091 12259163 -108998367 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 678 24 0 0 0 chr12 12260058 12260082 -108997448 + AT_rich Low_complexity Low_complexity 1 24 0 3 678 198 0 0 0 chr12 12260106 12260128 -108997402 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 678 205 191 24 0 chr12 12261685 12261727 -108995803 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 678 386 253 447 31 chr12 12262135 12262341 -108995189 + B4A SINE B4 1 292 0 3 678 239 224 0 13 chr12 12262781 12262858 -108994672 + GA-rich Low_complexity Low_complexity 2 77 0 3 678 186 288 107 27 chr12 12262946 12263021 -108994509 + MIRc SINE MIR 94 174 -94 3 678 402 100 0 0 chr12 12263814 12263874 -108993656 + (TGGA)n Simple_repeat Simple_repeat 4 63 0 3 678 375 224 120 20 chr12 12264282 12264382 -108993148 - Lx5 LINE L1 -307 6743 6634 3 678 656 249 21 62 chr12 12264369 12264592 -108992938 + Lx4B LINE L1 6774 7049 -9 3 678 826 140 20 27 chr12 12264603 12264740 -108992790 + B1_Mur4 SINE Alu 1 137 -13 3 678 387 0 0 0 chr12 12264740 12264783 -108992747 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 678 651 299 18 0 chr12 12264803 12264970 -108992560 + B3A SINE B2 3 172 -26 3 678 342 100 0 0 chr12 12264971 12265031 -108992499 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 678 215 214 0 0 chr12 12265031 12265073 -108992457 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 678 884 299 123 53 chr12 12265182 12265676 -108991854 - MER82 DNA MER2_type -122 531 3 3 678 1110 112 0 0 chr12 12267533 12267711 -108989819 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 678 210 62 20 59 chr12 12268891 12268942 -108988588 + (CGGGG)n Simple_repeat Simple_repeat 5 53 0 3 678 220 176 0 56 chr12 12269354 12269408 -108988122 + C-rich Low_complexity Low_complexity 1 51 0 3 678 268 375 81 14 chr12 12272175 12272386 -108985144 + MIRb SINE MIR 22 246 -22 3 678 255 214 170 20 chr12 12272775 12272875 -108984655 - MIRb SINE MIR -112 156 42 3 678 27 0 0 0 chr12 12273164 12273191 -108984339 + AT_rich Low_complexity Low_complexity 1 27 0 3 678 23 0 0 0 chr12 12274867 12274890 -108982640 + AT_rich Low_complexity Low_complexity 1 23 0 3 678 246 81 0 0 chr12 12275583 12275620 -108981910 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 3 678 207 326 35 0 chr12 12275636 12275722 -108981808 + GA-rich Low_complexity Low_complexity 4 92 0 3 678 215 167 33 0 chr12 12275752 12275812 -108981718 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3 678 264 309 163 10 chr12 12276471 12276667 -108980863 + MER46C DNA MER2_type 86 311 -27 3 678 1337 210 95 52 chr12 12276817 12277184 -108980346 + MTD LTR MaLR 37 419 0 3 678 202 358 10 10 chr12 12277517 12277613 -108979917 + MIR SINE MIR 20 115 -93 3 678 239 0 32 0 chr12 12278612 12278643 -108978887 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 678 520 305 14 21 chr12 12278669 12278813 -108978717 - RSINE1 SINE B4 -15 150 8 3 678 195 261 84 32 chr12 12279842 12279937 -108977593 + MIRc SINE MIR 43 142 -126 3 678 227 304 0 0 chr12 12280222 12280278 -108977252 + CT-rich Low_complexity Low_complexity 1 56 0 3 678 441 54 0 0 chr12 12280807 12280863 -108976667 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 3 678 458 284 55 55 chr12 12281683 12281847 -108975683 - L2a LINE L2 0 3426 3263 3 678 415 227 155 96 chr12 12281874 12282093 -108975437 + CYRA11_Mm Unknown Y-chromosome 153 384 -233 3 678 1104 121 103 21 chr12 12281901 12282095 -108975435 - URR1A DNA MER1_type -16 210 1 3 678 369 292 62 51 chr12 12282116 12282293 -108975237 - L2a LINE L2 -232 3194 3016 3 678 885 158 0 0 chr12 12282527 12282685 -108974845 + CT-rich Low_complexity Low_complexity 1 158 0 3 678 279 113 0 0 chr12 12283443 12283496 -108974034 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 678 306 317 81 86 chr12 12283617 12283816 -108973714 - ORR1E LTR MaLR -174 200 3 3 678 22 35 0 0 chr12 12283949 12283978 -108973552 + AT_rich Low_complexity Low_complexity 1 29 0 3 678 599 290 40 29 chr12 12284053 12284227 -108973303 + B3A SINE B2 1 176 -22 3 678 330 26 0 0 chr12 12284237 12284276 -108973254 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 678 181 343 56 0 chr12 12286560 12286668 -108970862 + L2a LINE L2 3302 3415 -11 3 678 1614 37 5 0 chr12 12286811 12287000 -108970530 + B2_Mm1a SINE B2 1 190 -3 3 678 23 33 0 0 chr12 12287034 12287064 -108970466 + AT_rich Low_complexity Low_complexity 1 30 0 3 678 589 306 122 9 chr12 12287130 12287351 -108970179 + MER2 DNA MER2_type 94 339 -6 3 678 220 350 33 53 chr12 12288634 12288785 -108968745 - MIRc SINE MIR -71 197 50 3 678 231 133 0 0 chr12 12289265 12289310 -108968220 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 3 678 571 263 166 56 chr12 12290004 12290366 -108967164 - MLT2B4 LTR ERVL -31 686 274 3 678 459 0 0 0 chr12 12290366 12290417 -108967113 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 678 571 240 208 68 chr12 12290417 12290497 -108967033 - MLT2B4 LTR ERVL -445 273 164 3 678 327 25 0 0 chr12 12291149 12291189 -108966341 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 678 210 319 233 10 chr12 12292304 12292510 -108965020 - L2 LINE L2 -392 3027 2776 3 678 604 327 136 32 chr12 12292522 12292993 -108964537 - L2 LINE L2 -728 2691 2172 3 678 22 0 0 0 chr12 12294615 12294637 -108962893 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 853 263 72 0 chr12 12295430 12295639 -108961891 + RCHARR1 DNA MER1_type 1 224 -750 3 678 764 219 45 70 chr12 12295687 12296078 -108961452 + RCHARR1 DNA MER1_type 314 974 0 3 678 801 82 0 0 chr12 12296230 12296340 -108961190 + (TC)n Simple_repeat Simple_repeat 1 110 0 3 678 493 276 40 8 chr12 12296408 12296532 -108960998 - B4A SINE B4 -81 211 84 3 678 252 86 0 0 chr12 12296543 12296578 -108960952 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 678 836 302 46 36 chr12 12298003 12298309 -108959221 - MLT1A0 LTR MaLR -36 329 21 3 678 1248 238 70 31 chr12 12300028 12300384 -108957146 + ORR1D2 LTR MaLR 1 370 0 3 678 249 295 301 8 chr12 12300385 12300518 -108957012 - MER20 DNA MER1_type -9 210 39 3 678 923 238 0 27 chr12 12300654 12300874 -108956656 + B3 SINE B2 3 216 0 3 678 367 349 108 6 chr12 12300935 12301111 -108956419 - MER63A DNA AcHobo -6 204 11 3 678 276 384 8 8 chr12 12305457 12305583 -108951947 + MER94 DNA AcHobo 4 129 -5 3 678 292 411 31 0 chr12 12306535 12306698 -108950832 + MIR SINE MIR 13 180 -82 3 678 396 0 0 0 chr12 12307879 12307923 -108949607 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 678 227 138 44 44 chr12 12307923 12308014 -108949516 + (CAGAGA)n Simple_repeat Simple_repeat 4 94 0 3 678 298 324 140 0 chr12 12308044 12308180 -108949350 - Lx8 LINE L1 -178 7295 7141 3 678 198 0 0 0 chr12 12308963 12308985 -108948545 + (CAGG)n Simple_repeat Simple_repeat 3 24 0 3 678 262 231 0 0 chr12 12309332 12309384 -108948146 + (TATG)n Simple_repeat Simple_repeat 3 54 0 3 678 537 115 0 0 chr12 12309451 12309538 -108947992 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 678 201 74 0 0 chr12 12309902 12309929 -108947601 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 3 678 762 276 51 43 chr12 12310151 12310427 -108947103 + B4A SINE B4 1 278 -14 3 678 360 0 0 0 chr12 12310432 12310472 -108947058 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 678 895 85 42 7 chr12 12310580 12310722 -108946808 + L1Md_F2 LINE L1 6436 6582 0 3 678 205 382 84 19 chr12 12310735 12310890 -108946640 + MIR3 SINE MIR 37 201 -7 4 678 3055 49 26 3 chr12 12312058 12312444 -108945086 - MTA_Mm LTR MaLR -1 395 1 4 678 181 300 74 12 chr12 12312676 12312757 -108944773 + MIRb SINE MIR 120 205 -63 4 678 246 281 0 63 chr12 12313294 12313389 -108944141 - L2a LINE L2 0 3426 3338 4 678 296 273 77 29 chr12 12313637 12313807 -108943723 - L2a LINE L2 -357 3062 2885 4 678 246 62 0 0 chr12 12314928 12314960 -108942570 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 678 274 284 0 64 chr12 12314979 12315175 -108942355 + (CATATA)n Simple_repeat Simple_repeat 1 183 0 4 678 3087 59 13 13 chr12 12315181 12315577 -108941953 + MTA_Mm LTR MaLR 1 396 0 4 678 2960 62 5 0 chr12 12315577 12315965 -108941565 + MTA_Mm-int LTR MaLR 1 390 -708 4 678 5657 24 2 0 chr12 12315965 12316604 -108940926 + L1Md_F2 LINE L1 5648 6287 -295 4 678 1269 89 0 11 chr12 12316603 12316784 -108940746 + L1Md_F2 LINE L1 6392 6570 -12 4 678 4565 61 47 102 chr12 12316785 12317549 -108939981 + MTA_Mm-int LTR MaLR 377 1098 0 4 678 3308 48 2 0 chr12 12317549 12317944 -108939586 + MTA_Mm LTR MaLR 1 396 0 4 678 218 206 95 14 chr12 12318597 12318671 -108938859 - L2c LINE L2 -229 3158 3079 4 678 459 149 9 18 chr12 12318937 12319046 -108938484 + GA-rich Low_complexity Low_complexity 1 108 0 4 678 207 173 0 0 chr12 12319193 12319245 -108938285 + GA-rich Low_complexity Low_complexity 1 52 0 4 679 216 311 13 39 chr12 12321160 12321237 -108936293 + MIR SINE MIR 185 259 -3 4 679 282 29 0 0 chr12 12321709 12321744 -108935786 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 4 679 432 235 40 73 chr12 12322327 12322451 -108935079 - PB1D9 SINE Alu 0 120 1 4 679 268 250 0 0 chr12 12322398 12322458 -108935072 - B4 SINE B4 -154 138 79 4 679 459 0 0 0 chr12 12322560 12322611 -108934919 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 679 416 261 49 32 chr12 12323122 12323245 -108934285 + B4 SINE B4 39 163 -129 4 679 252 273 0 15 chr12 12323258 12323325 -108934205 + B4 SINE B4 227 292 0 4 679 663 223 99 31 chr12 12324480 12324702 -108932828 - B4A SINE B4 -50 242 6 4 679 5546 140 8 1 chr12 12325245 12326090 -108931440 - Lx4A LINE L1 -421 6637 5787 4 679 414 0 0 0 chr12 12326228 12326274 -108931256 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 679 222 118 0 0 chr12 12326281 12326315 -108931215 + (GGA)n Simple_repeat Simple_repeat 2 35 0 4 679 243 161 16 97 chr12 12326748 12326810 -108930720 - MamRep434 DNA TcMar -156 270 214 4 679 225 318 123 4 chr12 12327866 12327968 -108929562 + MIRb SINE MIR 54 166 -110 4 679 207 284 70 50 chr12 12328085 12328185 -108929345 + L3 LINE CR1 3827 3928 -561 4 679 324 0 0 0 chr12 12328299 12328335 -108929195 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 679 372 300 112 95 chr12 12328693 12328872 -108928658 - L2 LINE L2 -543 2876 2686 4 679 2132 169 12 31 chr12 12328872 12329287 -108928243 + MTB_Mm LTR MaLR 1 407 0 4 679 372 300 112 95 chr12 12329287 12329667 -108927863 - L2 LINE L2 -734 2685 2307 4 679 192 77 0 0 chr12 12331205 12331231 -108926299 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 679 801 121 0 0 chr12 12331293 12331417 -108926113 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 679 597 167 10 0 chr12 12331421 12331523 -108926007 - B1_Mus1 SINE Alu -27 121 19 4 679 290 291 83 33 chr12 12331437 12331558 -108925972 - B4A SINE B4 -98 194 68 4 679 201 129 0 0 chr12 12331773 12331804 -108925726 + (TGGGGG)n Simple_repeat Simple_repeat 1 31 0 4 679 889 240 91 9 chr12 12332557 12332788 -108924742 + B4 SINE B4 43 292 0 4 679 885 136 0 0 chr12 12332819 12332996 -108924534 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 679 428 0 0 0 chr12 12334246 12334302 -108923228 + L1Md_A LINE L1 6527 6582 0 4 679 327 104 0 0 chr12 12334364 12334412 -108923118 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 679 369 75 0 0 chr12 12334843 12334896 -108922634 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 679 342 0 0 0 chr12 12334969 12335007 -108922523 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 679 343 219 19 45 chr12 12335044 12335194 -108922336 - B4 SINE B4 -70 222 41 4 679 1253 174 68 41 chr12 12335198 12335492 -108922038 - ORR1C1 LTR MaLR 0 378 77 4 679 341 258 56 0 chr12 12335488 12335577 -108921953 - B4 SINE B4 -156 136 43 4 679 556 225 80 0 chr12 12335836 12335987 -108921543 + B4 SINE B4 127 289 -3 4 679 430 119 0 0 chr12 12335980 12336047 -108921483 - ORR1C2 LTR MaLR -317 67 1 4 679 380 319 82 12 chr12 12336605 12336862 -108920668 - LTR48 LTR ERV1 -47 740 466 4 679 250 298 96 0 chr12 12336915 12337019 -108920511 - LTR48 LTR ERV1 -483 161 48 4 679 369 0 0 0 chr12 12337218 12337259 -108920271 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 679 2604 39 8 204 chr12 12337474 12337959 -108919571 - RLTR10 LTR ERVK 0 390 1 4 679 17433 27 1 2 chr12 12337961 12339945 -108917585 - RLTR10-int LTR ERVK -3 1984 3 4 679 2591 42 8 204 chr12 12339947 12340432 -108917098 - RLTR10 LTR ERVK 0 390 1 4 679 186 293 81 58 chr12 12340447 12340534 -108916996 - L2b LINE L2 -27 3348 3260 4 679 764 230 44 33 chr12 12340734 12340914 -108916616 - Lx8 LINE L1 -129 7344 7163 4 679 341 93 19 0 chr12 12342116 12342170 -108915360 + (CAAAA)n Simple_repeat Simple_repeat 5 59 0 4 679 1042 243 152 16 chr12 12342429 12342751 -108914779 - ORR1D2 LTR MaLR 0 370 5 4 679 447 68 0 0 chr12 12342891 12342950 -108914580 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 679 299 65 22 0 chr12 12345017 12345063 -108912467 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 679 924 232 4 49 chr12 12346359 12346585 -108910945 - B3 SINE B2 0 216 1 4 679 405 0 0 0 chr12 12346659 12346704 -108910826 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 679 511 276 28 56 chr12 12346705 12346847 -108910683 - RSINE1 SINE B4 0 165 28 4 679 299 226 12 0 chr12 12346860 12346937 -108910593 + PB1D10 SINE Alu 43 123 -26 4 679 597 28 0 0 chr12 12346969 12347040 -108910490 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 4 679 840 162 0 14 chr12 12349771 12349909 -108907621 - B1_Mus1 SINE Alu -12 136 1 4 679 195 365 25 25 chr12 12350241 12350404 -108907126 - L2b LINE L2 -240 3135 2973 4 679 591 15 0 0 chr12 12351287 12351355 -108906175 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 679 334 338 22 22 chr12 12351829 12351968 -108905562 + B1F SINE Alu 1 139 -10 4 679 333 0 0 0 chr12 12351968 12352005 -108905525 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 679 21 36 0 0 chr12 12352038 12352066 -108905464 + AT_rich Low_complexity Low_complexity 1 28 0 4 679 213 39 0 0 chr12 12352096 12352122 -108905408 + (T)n Simple_repeat Simple_repeat 1 26 0 4 679 11739 2 0 0 chr12 12352135 12354115 -108903415 - L1Md_A LINE L1 0 6582 4603 4 679 745 294 165 20 chr12 12354171 12354626 -108902904 + L1MB8 LINE L1 5331 5851 -327 4 679 936 285 53 16 chr12 12355499 12355873 -108901657 - L1MB1 LINE L1 -22 6146 5759 4 679 482 305 27 33 chr12 12356565 12356748 -108900782 + B3A SINE B2 1 182 -16 4 679 423 278 132 73 chr12 12357236 12357508 -108900022 + B4A SINE B4 5 292 0 4 679 200 317 0 0 chr12 12357508 12357568 -108899962 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 679 336 218 0 0 chr12 12357594 12357681 -108899849 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 679 330 250 0 0 chr12 12357711 12357815 -108899715 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 679 223 274 78 88 chr12 12357843 12358035 -108899495 - MIRc SINE MIR -26 242 53 4 679 336 321 0 14 chr12 12359400 12359542 -108897988 + (TATATG)n Simple_repeat Simple_repeat 3 142 0 4 679 549 215 62 0 chr12 12360230 12360360 -108897170 + ID_B1 SINE B4 4 141 -83 4 679 220 250 0 0 chr12 12360373 12360417 -108897113 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 679 285 29 0 0 chr12 12361772 12361806 -108895724 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 679 1097 217 9 19 chr12 12361897 12362113 -108895417 - B3 SINE B2 -1 215 2 4 679 231 114 0 0 chr12 12362145 12362189 -108895341 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 679 566 281 30 0 chr12 12363944 12364079 -108893451 - RSINE1 SINE B4 -19 146 8 4 679 180 215 28 0 chr12 12364113 12364220 -108893310 + (TA)n Simple_repeat Simple_repeat 1 110 0 4 679 307 283 86 7 chr12 12364335 12364474 -108893056 + L1MB3 LINE L1 6026 6175 -8 4 679 238 24 47 47 chr12 12365033 12365076 -108892454 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 4 679 422 18 18 0 chr12 12365337 12365392 -108892138 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 4 679 342 176 389 0 chr12 12365406 12365514 -108892016 + Lx9 LINE L1 7345 7494 -150 4 679 806 233 43 14 chr12 12366419 12366628 -108890902 - B3 SINE B2 0 216 2 4 679 279 366 57 47 chr12 12367325 12367537 -108889993 - MER58A DNA MER1_type -10 214 1 4 679 382 309 51 77 chr12 12367818 12368014 -108889516 - B4A SINE B4 -99 193 3 4 679 235 308 11 11 chr12 12369871 12369963 -108887567 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 4 679 378 0 0 0 chr12 12369987 12370029 -108887501 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 679 396 0 0 0 chr12 12370129 12370173 -108887357 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 679 533 276 78 49 chr12 12370192 12370338 -108887192 - B4A SINE B4 -41 251 94 4 679 2333 168 42 10 chr12 12370338 12370741 -108886789 - MTC LTR MaLR -3 418 3 4 679 533 276 78 49 chr12 12370741 12370838 -108886692 - B4A SINE B4 -199 93 1 4 679 811 170 76 6 chr12 12372455 12372627 -108884903 - MTE2b LTR MaLR -4 375 192 4 679 576 302 83 16 chr12 12373023 12373275 -108884255 - B4A SINE B4 -22 270 2 4 679 188 235 19 19 chr12 12375120 12375172 -108882358 - L2c LINE L2 -68 3319 3268 4 679 198 0 0 0 chr12 12375379 12375401 -108882129 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4 679 4037 65 0 55 chr12 12375424 12375990 -108881540 - L1_Mus2 LINE L1 0 6566 6032 4 679 526 322 45 15 chr12 12376005 12376207 -108881323 + B4 SINE B4 81 288 -4 4 679 231 208 21 0 chr12 12376218 12376266 -108881264 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 679 656 214 0 0 chr12 12376986 12377117 -108880413 - B1_Mus2 SINE Alu -7 140 10 4 679 1068 105 0 3 chr12 12377390 12378001 -108879529 + (TG)n Simple_repeat Simple_repeat 1 608 0 4 679 189 74 0 0 chr12 12378961 12378988 -108878542 + (T)n Simple_repeat Simple_repeat 1 27 0 5 679 447 256 74 0 chr12 12379286 12379407 -108878123 + B1F SINE Alu 1 130 -19 5 679 195 42 0 0 chr12 12380371 12380395 -108877135 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 679 940 236 5 5 chr12 12380719 12380923 -108876607 + B3 SINE B2 13 216 0 5 679 297 109 0 0 chr12 12381977 12382032 -108875498 + (CATA)n Simple_repeat Simple_repeat 2 56 0 5 679 200 128 0 25 chr12 12383050 12383090 -108874440 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 679 25 0 0 0 chr12 12383352 12383377 -108874153 + AT_rich Low_complexity Low_complexity 1 25 0 5 679 1128 83 0 0 chr12 12383803 12383948 -108873582 + B1_Mus1 SINE Alu 2 146 -2 5 679 393 75 0 0 chr12 12383959 12384012 -108873518 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 679 189 94 0 0 chr12 12384377 12384409 -108873121 + (T)n Simple_repeat Simple_repeat 1 32 0 5 679 959 276 34 119 chr12 12385642 12386028 -108871502 + MTE2a LTR MaLR 19 371 -8 5 679 204 239 0 21 chr12 12386335 12386382 -108871148 + CT-rich Low_complexity Low_complexity 5 50 0 5 679 233 277 54 6 chr12 12387281 12387378 -108870152 + CT-rich Low_complexity Low_complexity 1 101 0 5 679 1703 142 102 35 chr12 12387425 12387544 -108869986 - MTC LTR MaLR 0 421 307 5 679 1512 138 33 72 chr12 12387544 12387879 -108869651 + RLTRETN_Mm LTR ERVK 1 322 0 5 679 1703 142 102 35 chr12 12387879 12388101 -108869429 - MTC LTR MaLR -115 306 57 5 679 522 0 0 0 chr12 12388156 12388214 -108869316 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 679 826 161 23 35 chr12 12388897 12389071 -108868459 + B2_Mm2 SINE B2 1 172 -23 5 679 792 247 96 35 chr12 12389163 12389423 -108868107 + B4 SINE B4 1 276 -16 5 679 231 146 0 0 chr12 12389484 12389525 -108868005 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 679 255 93 0 0 chr12 12390005 12390048 -108867482 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 5 679 265 229 0 0 chr12 12390640 12390688 -108866842 - RSINE1 SINE B4 -38 127 80 5 679 3536 181 49 59 chr12 12390889 12391747 -108865783 - RMER13B LTR ERVK -55 853 5 5 679 1085 321 51 6 chr12 12393082 12393436 -108864094 - Lx8 LINE L1 -180 7293 6924 5 679 666 0 0 0 chr12 12394234 12394308 -108863222 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 679 492 48 0 0 chr12 12394743 12394806 -108862724 + (TGAG)n Simple_repeat Simple_repeat 1 63 0 5 679 276 348 31 36 chr12 12396953 12397147 -108860383 - ERVL-E-int LTR ERVL -1919 3748 3556 5 679 1841 115 28 28 chr12 12397246 12397568 -108859962 + RLTRETN_Mm LTR ERVK 1 322 0 5 679 423 269 73 40 chr12 12397713 12397864 -108859666 - ERVL-E-int LTR ERVL -2399 3268 3113 5 679 519 221 18 9 chr12 12397869 12397983 -108859547 + B1_Mur4 SINE Alu 13 127 -23 5 679 385 327 43 12 chr12 12398195 12398359 -108859171 - ERVL-E-int LTR ERVL -2869 2798 2630 5 679 284 381 26 26 chr12 12398374 12398603 -108858927 - ERVL-E-int LTR ERVL -3064 2693 2465 5 679 391 326 77 11 chr12 12398689 12398872 -108858658 - ERVL-E-int LTR ERVL -3365 2302 2108 5 679 845 250 38 5 chr12 12398899 12399108 -108858422 - B3 SINE B2 0 216 1 5 679 1215 191 23 0 chr12 12399587 12399807 -108857723 + URR1B DNA MER1_type 1 225 0 5 679 779 289 48 65 chr12 12400286 12400578 -108856952 - B4 SINE B4 0 292 6 5 679 1532 248 45 54 chr12 12400736 12400937 -108856593 - MTD LTR MaLR 0 419 207 5 679 240 111 0 0 chr12 12400937 12400973 -108856557 + (ATG)n Simple_repeat Simple_repeat 1 36 0 5 679 1532 248 45 54 chr12 12400973 12401194 -108856336 - MTD LTR MaLR -213 206 1 5 679 252 247 35 23 chr12 12401262 12401349 -108856181 - MER58B DNA MER1_type -67 274 187 5 679 398 335 66 22 chr12 12402421 12402693 -108854837 - LTR41 LTR ERVL -6 752 469 5 679 264 230 103 0 chr12 12402880 12403006 -108854524 - L1VL2 LINE L1 -5811 524 386 5 679 407 332 10 54 chr12 12403151 12403355 -108854175 - LTR41 LTR ERVL -564 204 10 5 679 234 0 0 0 chr12 12403677 12403703 -108853827 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 679 1043 86 46 0 chr12 12403703 12403855 -108853675 - B2_Mm2 SINE B2 -36 159 1 5 679 4696 146 44 5 chr12 12403925 12404878 -108852652 - Lx5 LINE L1 -1009 6041 5041 5 679 3171 244 51 17 chr12 12404857 12405627 -108851903 + Lx5 LINE L1 6249 7044 -6 5 679 543 285 87 64 chr12 12405685 12405951 -108851579 - MER2 DNA MER2_type -48 297 26 5 679 915 161 0 39 chr12 12406084 12406239 -108851291 + B1_Mur3 SINE Alu 1 149 0 5 679 809 114 27 7 chr12 12406239 12406389 -108851141 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 5 679 327 130 0 0 chr12 12406772 12406826 -108850704 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 679 270 0 0 0 chr12 12407570 12407600 -108849930 + (T)n Simple_repeat Simple_repeat 1 30 0 5 679 1051 57 0 0 chr12 12407603 12407743 -108849787 - B1_Mus1 SINE Alu 0 148 9 5 679 413 196 0 108 chr12 12407638 12407758 -108849772 - MT2B LTR ERVL -337 264 158 5 679 279 356 78 26 chr12 12408916 12409109 -108848421 - MIRb SINE MIR -16 252 50 5 679 197 281 109 0 chr12 12409161 12409225 -108848305 - L2c LINE L2 -192 3195 3125 5 679 1204 49 7 0 chr12 12411872 12412016 -108845514 + B1_Mus2 SINE Alu 2 146 -1 5 679 742 177 0 12 chr12 12412188 12412348 -108845182 + (CCCCAG)n Simple_repeat Simple_repeat 2 159 0 5 679 1173 75 0 0 chr12 12414185 12414331 -108843199 + B1_Mus2 SINE Alu 2 147 0 5 679 225 258 0 0 chr12 12414473 12414539 -108842991 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 679 211 382 20 0 chr12 12414701 12414803 -108842727 - MER5B DNA MER1_type 0 178 75 5 679 1712 115 60 18 chr12 12414931 12415215 -108842315 + Lx2 LINE L1 6702 6997 0 5 679 323 301 9 9 chr12 12415314 12415428 -108842102 - L1M5 LINE L1 -468 5656 5543 5 679 225 254 0 0 chr12 12415486 12415541 -108841989 + L3 LINE CR1 4318 4372 -117 5 679 345 47 0 0 chr12 12416510 12416553 -108840977 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 679 429 234 0 11 chr12 12417540 12417635 -108839895 + MTC LTR MaLR 1 94 -327 5 679 770 302 45 76 chr12 12417881 12418329 -108839201 - L1M2 LINE L1 -1194 4949 4516 5 679 713 316 83 13 chr12 12418416 12418948 -108838582 - L1M2 LINE L1 -3000 3143 2555 5 679 2862 53 47 16 chr12 12418948 12419332 -108838198 - MTA_Mm LTR MaLR 0 396 1 5 679 444 340 75 28 chr12 12419332 12419387 -108838143 - L1M2 LINE L1 -3326 2554 2493 5 679 776 240 35 15 chr12 12420345 12420428 -108837102 + Lx8 LINE L1 6314 6400 -1073 5 679 531 0 0 0 chr12 12420428 12420487 -108837043 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5 679 776 240 35 15 chr12 12420487 12420606 -108836924 + Lx8 LINE L1 6401 6520 -953 5 679 492 62 0 0 chr12 12420803 12420867 -108836663 + (TATAG)n Simple_repeat Simple_repeat 4 67 0 5 679 634 291 68 52 chr12 12420942 12421250 -108836280 - Lx8 LINE L1 -84 7389 7077 5 679 318 240 62 0 chr12 12421250 12421346 -108836184 + B1F1 SINE Alu 12 113 -36 5 679 275 336 56 0 chr12 12422875 12423000 -108834530 + MIRc SINE MIR 48 179 -89 5 679 580 271 161 80 chr12 12423812 12424061 -108833469 + B4A SINE B4 12 280 -12 5 679 736 136 0 50 chr12 12424200 12424339 -108833191 + URR1A DNA MER1_type 79 210 -16 5 679 1548 137 81 0 chr12 12424410 12424681 -108832849 - ORR1A1 LTR MaLR -48 298 6 5 679 5053 104 2 22 chr12 12424686 12425491 -108832039 - ORR1A1-int LTR MaLR 0 1963 1175 5 679 641 167 7 22 chr12 12425620 12425755 -108831775 - ORR1A3-int LTR MaLR -314 1649 1517 5 679 310 279 16 32 chr12 12426495 12426621 -108830909 - RSINE1 SINE B4 -36 129 6 5 679 579 88 0 0 chr12 12426917 12427008 -108830522 + (CA)n Simple_repeat Simple_repeat 1 91 0 5 679 263 164 3 0 chr12 12427136 12427188 -108830342 + MIR SINE MIR 109 165 -103 5 679 185 361 92 8 chr12 12428599 12428730 -108828800 + MIR SINE MIR 6 147 -115 5 679 190 323 119 20 chr12 12428984 12429085 -108828445 + MIR SINE MIR 29 139 -123 5 679 339 146 75 39 chr12 12429317 12429426 -108828104 - MLT1J1 LTR MaLR -314 134 26 5 679 1809 185 28 17 chr12 12429988 12430350 -108827180 - ORR1D1 LTR MaLR 0 374 9 5 679 219 114 0 0 chr12 12431028 12431063 -108826467 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 5 679 34 0 0 0 chr12 12431231 12431265 -108826265 + AT_rich Low_complexity Low_complexity 1 34 0 5 679 1234 269 188 30 chr12 12431290 12431934 -108825596 - MER63C DNA AcHobo -167 763 18 5 679 22 35 0 0 chr12 12431955 12431984 -108825546 + AT_rich Low_complexity Low_complexity 1 29 0 5 679 611 311 101 37 chr12 12432371 12432698 -108824832 + MLT1A0 LTR MaLR 1 348 -17 5 679 261 276 0 17 chr12 12434664 12434723 -108822807 - tRNA-Ala-GCY_ tRNA tRNA -17 58 1 5 679 393 22 0 0 chr12 12434952 12434998 -108822532 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 679 207 0 0 0 chr12 12436329 12436352 -108821178 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 679 190 299 81 34 chr12 12438313 12438462 -108819068 - L2a LINE L2 -317 3109 2954 5 679 209 161 0 0 chr12 12438466 12438497 -108819033 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 5 679 237 353 120 12 chr12 12439408 12439649 -108817881 + L3 LINE CR1 4210 4476 -13 5 679 259 314 109 7 chr12 12440119 12440257 -108817273 + MLT1A0 LTR MaLR 25 176 -214 5 679 535 277 78 11 chr12 12440284 12440463 -108817067 + MLT1A0 LTR MaLR 162 352 -13 5 679 207 0 0 0 chr12 12442339 12442362 -108815168 + (TTG)n Simple_repeat Simple_repeat 1 23 0 5 679 401 283 15 23 chr12 12442363 12442493 -108815037 - B1F SINE Alu -20 129 1 5 679 411 21 0 0 chr12 12443106 12443154 -108814376 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 679 188 352 47 23 chr12 12444335 12444463 -108813067 - MIR3 SINE MIR 0 208 78 5 679 196 302 0 60 chr12 12445298 12445365 -108812165 + MIR SINE MIR 61 123 -139 5 679 402 328 117 34 chr12 12445733 12446058 -108811472 - ORR1E LTR MaLR 0 359 8 5 679 358 229 109 51 chr12 12446175 12446313 -108811217 - LTR41 LTR ERVL -6 762 617 5 679 861 215 101 15 chr12 12446322 12446520 -108811010 + B3 SINE B2 2 216 0 5 679 242 336 35 35 chr12 12446706 12446820 -108810710 - LTR41 LTR ERVL -325 443 330 5 679 21 0 0 0 chr12 12447466 12447487 -108810043 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 244 325 0 105 chr12 12448844 12448930 -108808600 - B3A SINE B2 -8 190 114 5 679 528 279 96 54 chr12 12448873 12449040 -108808490 - B4A SINE B4 0 292 119 6 679 317 307 13 0 chr12 12450191 12450266 -108807264 + ID4_ SINE ID 1 76 -7 6 679 274 302 0 0 chr12 12451280 12451343 -108806187 + ID4 SINE ID 8 70 -13 6 680 270 136 0 0 chr12 12451967 12452011 -108805519 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 680 898 307 33 33 chr12 12452013 12452289 -108805241 - B4 SINE B4 0 292 17 6 680 1380 318 96 18 chr12 12453361 12454027 -108803503 + MER20B DNA MER1_type 38 755 -28 6 680 590 284 10 70 chr12 12455960 12456070 -108801460 - RMER30 DNA MER1_type -1 201 96 6 680 248 0 31 0 chr12 12456070 12456102 -108801428 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6 680 590 284 10 70 chr12 12456102 12456192 -108801338 - RMER30 DNA MER1_type -107 95 13 6 680 727 125 19 71 chr12 12457129 12457243 -108800287 + BC1_Mm scRNA scRNA 1 110 -42 6 680 1956 70 0 8 chr12 12457243 12457489 -108800041 + L1Md_F2 LINE L1 6337 6580 -2 6 680 727 125 19 71 chr12 12457489 12457529 -108800001 + BC1_Mm scRNA scRNA 111 147 -5 6 680 557 297 128 20 chr12 12457490 12457533 -108799997 - MLT2B2 LTR ERVL -13 502 455 6 680 1102 7 34 0 chr12 12457533 12457680 -108799850 + (GA)n Simple_repeat Simple_repeat 2 153 0 6 680 557 304 143 22 chr12 12457680 12457968 -108799562 - MLT2B2 LTR ERVL -61 454 132 6 680 921 276 48 3 chr12 12457983 12458278 -108799252 - L1MC1 LINE L1 -351 5982 5675 6 680 210 37 0 0 chr12 12458463 12458490 -108799040 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 680 261 372 25 58 chr12 12458860 12458980 -108798550 - MER94 DNA AcHobo -14 120 5 6 680 224 266 47 148 chr12 12459239 12459367 -108798163 - MIR3 SINE MIR -79 129 15 6 680 466 311 16 8 chr12 12460419 12460542 -108796988 - ID_B1 SINE B4 -15 209 86 6 680 282 313 40 46 chr12 12460545 12460719 -108796811 + YREP_Mm Unknown Unknown 120 292 -1520 6 680 527 240 16 20 chr12 12460610 12460735 -108796795 - ID_B1 SINE B4 -10 214 96 6 680 9139 96 5 6 chr12 12460758 12462033 -108795497 + L1_Mm LINE L1 4031 5303 -580 6 680 1259 28 0 0 chr12 12462031 12462175 -108795355 - L1Md_T LINE L1 -436 6146 6003 6 680 2785 59 26 0 chr12 12462175 12462515 -108795015 + L1_Mus1 LINE L1 6219 6567 0 6 680 1224 73 6 18 chr12 12462515 12462537 -108794993 - L1Md_T LINE L1 -579 6003 5983 6 680 1445 211 22 14 chr12 12464647 12465199 -108792331 + Lx5 LINE L1 882 1526 -4351 6 680 1870 97 0 4 chr12 12465186 12465446 -108792084 - L1_Mm LINE L1 -577 5306 5048 6 680 7695 163 19 32 chr12 12465428 12466929 -108790601 - L1_Mur2 LINE L1 -2903 2974 1494 6 680 368 72 0 18 chr12 12466929 12466986 -108790544 + (TCC)n Simple_repeat Simple_repeat 1 56 0 6 680 6248 73 1 4 chr12 12466986 12467751 -108789779 + L1_Mus1 LINE L1 5805 6567 0 6 680 2387 151 28 5 chr12 12467770 12468204 -108789326 + Lx5 LINE L1 2948 3391 -2486 6 680 6839 170 65 25 chr12 12468179 12470087 -108787443 + Lx5 LINE L1 5053 7050 0 6 680 362 297 46 98 chr12 12470194 12470347 -108787183 + B4A SINE B4 3 147 -145 6 680 297 0 0 0 chr12 12470477 12470510 -108787020 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 680 216 0 0 0 chr12 12470510 12470533 -108786997 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 680 252 0 0 0 chr12 12470826 12470854 -108786676 + (A)n Simple_repeat Simple_repeat 1 28 0 6 680 444 118 0 0 chr12 12471844 12471912 -108785618 + (CAA)n Simple_repeat Simple_repeat 2 69 0 6 680 258 253 125 11 chr12 12472490 12472578 -108784952 + PB1 SINE Alu 30 127 0 6 680 24 0 0 0 chr12 12472666 12472690 -108784840 + AT_rich Low_complexity Low_complexity 1 24 0 6 680 264 213 0 0 chr12 12473106 12473153 -108784377 + MTC LTR MaLR 375 421 0 6 680 305 91 0 0 chr12 12473153 12473195 -108784335 + ORR1D2 LTR MaLR 329 370 0 6 680 1115 289 38 6 chr12 12473625 12473940 -108783590 + ORR1E LTR MaLR 1 325 -34 6 680 1771 120 92 50 chr12 12473940 12474257 -108783273 + MTB_Mm LTR MaLR 2 331 -76 6 680 35269 41 1 4 chr12 12474257 12479301 -108778229 + L1Md_Gf LINE L1 337 5461 -425 6 680 371 289 83 64 chr12 12479301 12479429 -108778101 + MTC LTR MaLR 198 329 -90 6 680 8973 35 0 0 chr12 12479429 12480425 -108777105 + L1Md_T LINE L1 5587 6582 0 6 680 440 230 0 22 chr12 12480425 12480514 -108777016 + MTC LTR MaLR 335 421 0 6 680 305 91 0 0 chr12 12480514 12480556 -108776974 + ORR1D2 LTR MaLR 329 370 0 6 680 3100 81 5 10 chr12 12481545 12481945 -108775585 - MTB LTR MaLR -2 398 1 6 680 539 348 98 64 chr12 12482548 12482975 -108774555 + MLT2B1 LTR ERVL 3 445 -75 6 680 510 70 0 0 chr12 12482975 12483046 -108774484 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 6 680 539 348 98 64 chr12 12483046 12483077 -108774453 + MLT2B1 LTR ERVL 446 479 -41 6 680 246 62 0 0 chr12 12483077 12483109 -108774421 + (TCCA)n Simple_repeat Simple_repeat 3 34 0 6 680 539 348 98 64 chr12 12483109 12483150 -108774380 + MLT2B1 LTR ERVL 480 520 0 6 680 317 345 22 45 chr12 12483534 12483713 -108773817 + L1M5 LINE L1 5209 5383 -763 6 680 213 323 0 0 chr12 12483809 12483871 -108773659 - MER5B DNA MER1_type -3 175 114 6 680 388 329 21 30 chr12 12483875 12484110 -108773420 + L1MEc LINE L1 41 273 -6127 6 680 7725 53 20 7 chr12 12484293 12485210 -108772320 - RLTR13B3 LTR ERVK 0 929 1 6 680 998 175 0 0 chr12 12485287 12485430 -108772100 + B1_Mus1 SINE Alu 5 147 -1 6 680 22 35 0 0 chr12 12485502 12485531 -108771999 + AT_rich Low_complexity Low_complexity 1 29 0 6 680 189 107 0 0 chr12 12485692 12485720 -108771810 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 6 680 1069 259 0 0 chr12 12486344 12486560 -108770970 + B3 SINE B2 1 216 0 6 680 641 215 110 78 chr12 12486685 12486851 -108770679 + B3A SINE B2 34 204 -12 6 680 410 302 68 34 chr12 12486919 12486978 -108770552 + ORR1E LTR MaLR 3 68 -291 6 680 1745 210 110 13 chr12 12486978 12487359 -108770171 - MTD LTR MaLR -1 418 1 6 680 410 302 68 34 chr12 12487359 12487505 -108770025 + ORR1E LTR MaLR 69 214 -145 6 680 877 186 64 111 chr12 12487728 12488108 -108769422 + RMER17D2 LTR ERVK 1 388 -421 6 680 22 35 0 0 chr12 12488240 12488269 -108769261 + AT_rich Low_complexity Low_complexity 1 29 0 6 680 587 256 50 39 chr12 12488336 12488617 -108768913 - RLTR15 LTR ERVK -28 331 48 6 680 461 240 93 27 chr12 12488586 12488736 -108768794 - RLTR12B LTR ERVK -322 206 47 6 680 855 180 157 11 chr12 12490141 12490332 -108767198 + URR1B DNA MER1_type 1 219 -6 6 680 3394 65 10 7 chr12 12490401 12490819 -108766711 - L1Md_F2 LINE L1 0 6582 6164 6 680 513 0 0 0 chr12 12491767 12491824 -108765706 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 680 264 268 68 58 chr12 12493164 12493267 -108764263 - MLT1A1 LTR MaLR -14 394 291 6 680 270 268 134 0 chr12 12493932 12494014 -108763516 + MIRc SINE MIR 70 162 -106 6 680 220 270 14 35 chr12 12494069 12494156 -108763374 + CT-rich Low_complexity Low_complexity 1 85 0 6 680 342 270 104 30 chr12 12494862 12495026 -108762504 - MIRc SINE MIR -44 224 49 6 680 2373 193 26 2 chr12 12495476 12495902 -108761628 - Lx5 LINE L1 -391 6659 6224 6 680 2656 295 51 24 chr12 12496302 12496972 -108760558 + L1M2 LINE L1 4072 4785 -1358 6 680 369 43 0 0 chr12 12496972 12497019 -108760511 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 680 2656 307 78 27 chr12 12497019 12498033 -108759497 + L1M2 LINE L1 4755 5880 0 6 680 339 25 0 0 chr12 12498323 12498363 -108759167 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 680 429 262 76 41 chr12 12498498 12498669 -108758861 - MLT1F LTR MaLR -191 357 181 6 680 382 312 217 39 chr12 12498835 12499170 -108758360 - MLT1F-int LTR MaLR -5 1484 1086 6 680 477 269 44 37 chr12 12499170 12499305 -108758225 + B4A SINE B4 2 137 -155 6 680 215 121 51 17 chr12 12499487 12499546 -108757984 + GA-rich Low_complexity Low_complexity 2 62 0 6 680 519 302 60 29 chr12 12499553 12499801 -108757729 - MLT1F-int LTR MaLR -420 1069 735 6 680 420 20 0 0 chr12 12499801 12499850 -108757680 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 680 519 299 55 29 chr12 12499850 12499874 -108757656 - MLT1F-int LTR MaLR -639 850 827 6 680 275 256 156 41 chr12 12499868 12499990 -108757540 - MLT1F LTR MaLR -271 277 142 6 680 736 321 52 35 chr12 12500272 12500620 -108756910 - ORR1E LTR MaLR 0 359 6 1 680 3522 81 8 14 chr12 12500849 12501338 -108756192 + L1_Mus4 LINE L1 6148 6633 -3 2 680 1132 69 7 14 chr12 12501875 12502022 -108755508 + B1_Mus1 SINE Alu 2 147 -1 3 680 222 309 12 12 chr12 12502231 12502313 -108755217 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 680 477 0 0 0 chr12 12504989 12505042 -108752488 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 680 511 295 0 7 chr12 12505054 12505194 -108752336 + B3A SINE B2 3 141 -57 6 680 360 0 0 0 chr12 12505196 12505236 -108752294 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 680 369 62 0 0 chr12 12505330 12505378 -108752152 + (ATATG)n Simple_repeat Simple_repeat 2 49 0 8 680 201 182 0 0 chr12 12505899 12505932 -108751598 + A-rich Low_complexity Low_complexity 1 33 0 9 680 22 0 0 0 chr12 12506262 12506284 -108751246 + AT_rich Low_complexity Low_complexity 1 22 0 1 680 208 203 14 42 chr12 12507044 12507116 -108750414 + T-rich Low_complexity Low_complexity 3 72 0 1 680 503 184 47 37 chr12 12507126 12507233 -108750297 - B1_Mus1 SINE Alu -40 108 1 1 680 344 178 52 122 chr12 12507130 12507245 -108750285 - MT2B LTR ERVL -343 258 152 1 680 52 41 0 0 chr12 12507245 12507318 -108750212 + AT_rich Low_complexity Low_complexity 1 73 0 1 680 2782 230 83 37 chr12 12507339 12508174 -108749356 + RCHARR1 DNA MER1_type 102 974 0 1 680 774 138 0 0 chr12 12508923 12509039 -108748491 + B1_Mur4 SINE Alu 2 117 -33 1 680 1024 269 73 3 chr12 12509640 12509942 -108747588 - MTD LTR MaLR -85 334 12 1 680 249 291 50 25 chr12 12510234 12510354 -108747176 - L1M2 LINE L1 -4595 2254 2132 1 680 486 33 0 0 chr12 12510519 12510579 -108746951 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 680 320 321 41 55 chr12 12510604 12510749 -108746781 - B4A SINE B4 -148 144 2 2 680 1372 52 0 17 chr12 12511106 12511267 -108746263 + B2_Mm1a SINE B2 1 160 -33 2 680 306 0 0 0 chr12 12511267 12511301 -108746229 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 680 1372 52 0 17 chr12 12511301 12511316 -108746214 + B2_Mm1a SINE B2 161 173 -20 2 680 561 252 23 75 chr12 12511331 12511545 -108745985 + MLT1B LTR MaLR 188 390 0 2 680 392 295 119 26 chr12 12511661 12511979 -108745551 - MTD LTR MaLR 0 379 33 2 680 340 137 55 0 chr12 12512132 12512205 -108745325 - MLT1D LTR MaLR -2 503 427 2 680 21 0 0 0 chr12 12512355 12512376 -108745154 + AT_rich Low_complexity Low_complexity 1 21 0 2 680 23 0 0 0 chr12 12512832 12512855 -108744675 + AT_rich Low_complexity Low_complexity 1 23 0 2 680 895 245 103 31 chr12 12513125 12513386 -108744144 - B4A SINE B4 -7 285 6 2 680 241 239 53 53 chr12 12513848 12513923 -108743607 + L2b LINE L2 3301 3375 0 2 680 600 311 88 20 chr12 12517158 12517500 -108740030 + MLT1F1 LTR MaLR 205 569 0 3 680 182 133 0 0 chr12 12517554 12517584 -108739946 + MIRc SINE MIR 68 97 -171 3 680 852 39 0 0 chr12 12518034 12518138 -108739392 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 3 680 267 312 9 9 chr12 12518635 12518748 -108738782 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 680 279 341 0 11 chr12 12518755 12518844 -108738686 - B4A SINE B4 -2 290 203 3 680 523 204 18 9 chr12 12519071 12519180 -108738350 + RSINE1 SINE B4 13 122 -43 3 680 657 0 0 0 chr12 12520236 12520309 -108737221 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 680 915 145 0 0 chr12 12520309 12520454 -108737076 - B2_Mm2 SINE B2 -49 146 2 3 680 552 306 12 30 chr12 12520681 12520846 -108736684 + RSINE1 SINE B4 4 165 0 3 680 802 212 96 20 chr12 12520910 12521107 -108736423 + B3 SINE B2 3 214 -2 3 680 306 0 0 0 chr12 12521352 12521386 -108736144 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 680 1092 78 0 0 chr12 12521389 12521530 -108736000 - B1_Mus1 SINE Alu -7 141 1 4 680 823 289 88 0 chr12 12524736 12524975 -108732555 + B4A SINE B4 7 266 -26 4 680 281 132 19 0 chr12 12524982 12525035 -108732495 + L1_Mur3 LINE L1 4433 4486 -1394 4 680 480 183 21 0 chr12 12525026 12525119 -108732411 + L1_Mur3 LINE L1 4804 4898 -982 4 680 607 209 65 13 chr12 12525115 12525270 -108732260 + Lx7 LINE L1 7454 7616 -80 4 680 356 321 126 57 chr12 12525694 12526114 -108731416 - L2a LINE L2 0 3426 2978 4 680 206 244 0 0 chr12 12526305 12526346 -108731184 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 680 194 312 26 0 chr12 12526473 12526550 -108730980 - L2a LINE L2 -788 2631 2553 4 680 1394 173 0 0 chr12 12528429 12528654 -108728876 - URR1B DNA MER1_type 0 225 1 4 680 987 109 0 0 chr12 12528707 12528872 -108728658 + (TGG)n Simple_repeat Simple_repeat 2 166 0 4 680 261 0 0 0 chr12 12529228 12529257 -108728273 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 680 609 212 17 0 chr12 12529893 12530011 -108727519 + B1F2 SINE Alu 24 143 -6 5 680 1225 104 38 5 chr12 12530526 12530710 -108726820 + B2_Mm2 SINE B2 2 191 -4 5 680 216 97 0 0 chr12 12530713 12530744 -108726786 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 5 680 767 196 0 6 chr12 12531297 12531466 -108726064 + GA-rich Low_complexity Low_complexity 1 168 0 5 680 316 73 0 0 chr12 12531467 12531508 -108726022 + (GGA)n Simple_repeat Simple_repeat 2 42 0 5 680 1581 317 10 8 chr12 12531738 12532234 -108725296 + Lx8 LINE L1 6805 7301 -172 5 680 487 306 0 0 chr12 12535913 12536057 -108721473 + MLT1B LTR MaLR 3 146 -244 5 680 429 20 0 0 chr12 12537513 12537563 -108719967 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 5 680 200 331 36 29 chr12 12537714 12537854 -108719676 + L2b LINE L2 3018 3158 -217 5 680 180 338 62 12 chr12 12538582 12538663 -108718867 + MIRm SINE MIR 158 242 -34 5 680 210 333 0 0 chr12 12538683 12538752 -108718778 + (TGGA)n Simple_repeat Simple_repeat 2 70 0 6 680 234 0 0 0 chr12 12538989 12539015 -108718515 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 680 444 266 39 13 chr12 12539092 12539248 -108718282 + MIRc SINE MIR 34 193 -75 6 680 2425 296 79 30 chr12 12539894 12540791 -108716739 - Lx8 LINE L1 -123 7350 6410 6 680 294 95 0 0 chr12 12541185 12541227 -108716303 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 6 680 1266 90 0 0 chr12 12541229 12541407 -108716123 + (GAGAA)n Simple_repeat Simple_repeat 3 180 0 6 680 217 295 26 0 chr12 12541725 12541803 -108715727 + L3b LINE CR1 178 257 -225 6 680 659 49 0 0 chr12 12542562 12542643 -108714887 - L1_Mm LINE L1 -1953 3930 3850 6 680 885 93 8 0 chr12 12542643 12542772 -108714758 + L1_Mus1 LINE L1 6437 6566 -1 6 680 33 25 0 0 chr12 12542773 12542813 -108714717 + AT_rich Low_complexity Low_complexity 1 40 0 6 680 1431 254 25 16 chr12 12542938 12543303 -108714227 - ORR1D2 LTR MaLR -2 368 1 7 680 225 311 48 24 chr12 12543383 12543508 -108714022 - MIRb SINE MIR -29 239 112 7 680 182 318 55 18 chr12 12544219 12544328 -108713202 - L2c LINE L2 -82 3305 3193 7 680 505 262 100 65 chr12 12544815 12545044 -108712486 + B4A SINE B4 3 239 -53 7 680 783 161 20 47 chr12 12545039 12545189 -108712341 + B1_Mur4 SINE Alu 5 150 0 7 680 220 390 0 0 chr12 12545221 12545298 -108712232 + RSINE1 SINE B4 82 158 -7 7 680 947 294 44 67 chr12 12546035 12546396 -108711134 + MTE2b LTR MaLR 15 367 -12 7 680 201 279 70 17 chr12 12546436 12546532 -108710998 - MIRc SINE MIR -110 166 64 7 680 885 130 216 0 chr12 12546611 12546796 -108710734 - URR1A DNA MER1_type 0 226 2 7 680 447 19 0 0 chr12 12547784 12547836 -108709694 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 680 282 73 0 0 chr12 12548795 12548836 -108708694 + (CCCCCT)n Simple_repeat Simple_repeat 5 45 0 8 680 444 263 117 0 chr12 12550153 12550290 -108707240 + L1_Mur3 LINE L1 5302 5454 -426 8 680 404 230 81 0 chr12 12550293 12550380 -108707150 + PB1D7 SINE Alu 18 111 -9 8 680 590 286 17 63 chr12 12550410 12550649 -108706881 + L1M2 LINE L1 5494 5721 -570 8 680 531 208 0 0 chr12 12550706 12550826 -108706704 + (TA)n Simple_repeat Simple_repeat 2 121 0 8 680 270 0 0 0 chr12 12550826 12550856 -108706674 + (GA)n Simple_repeat Simple_repeat 2 31 0 8 680 248 203 0 80 chr12 12550945 12551020 -108706510 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 8 680 225 0 0 0 chr12 12551022 12551047 -108706483 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 680 204 40 0 0 chr12 12552053 12552078 -108705452 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 8 680 180 0 0 0 chr12 12552367 12552387 -108705143 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 680 576 365 52 26 chr12 12552387 12552618 -108704912 + B4A SINE B4 50 286 -6 9 680 344 319 48 105 chr12 12553422 12553508 -108704022 + ORR1E LTR MaLR 54 135 -224 9 680 342 61 0 0 chr12 12553508 12553557 -108703973 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 680 344 319 48 105 chr12 12553557 12553785 -108703745 + ORR1E LTR MaLR 136 350 -9 9 680 661 251 87 52 chr12 12553792 12554078 -108703452 + RMER21A LTR ERV1 389 684 -263 9 680 257 146 0 0 chr12 12554836 12554877 -108702653 - RMER15 LTR ERVL 0 575 535 9 680 401 296 14 49 chr12 12557309 12557451 -108700079 + ID_B1 SINE B4 79 215 -9 9 680 607 267 105 28 chr12 12557786 12558033 -108699497 + RMER15 LTR ERVL 304 569 -6 9 680 1221 191 18 87 chr12 12558940 12559216 -108698314 - Lx9 LINE L1 -1047 6597 6341 9 680 447 137 0 0 chr12 12559240 12559313 -108698217 + (TATG)n Simple_repeat Simple_repeat 2 74 0 9 680 215 114 23 0 chr12 12559318 12559362 -108698168 + (CAA)n Simple_repeat Simple_repeat 2 46 0 9 680 240 307 108 16 chr12 12559801 12559930 -108697600 + L1M5 LINE L1 4546 4686 -1460 1 680 497 327 147 60 chr12 12559931 12560016 -108697514 + MER119 DNA MER1_type 3 89 -494 1 680 480 304 95 26 chr12 12560016 12560289 -108697241 + B4A SINE B4 1 292 0 1 680 497 327 147 60 chr12 12560289 12560639 -108696891 + MER119 DNA MER1_type 90 476 -107 1 680 5925 34 0 0 chr12 12560658 12561341 -108696189 - L1Md_T LINE L1 0 6582 5900 1 680 252 0 0 0 chr12 12561786 12561814 -108695716 + (A)n Simple_repeat Simple_repeat 1 28 0 1 680 301 221 0 72 chr12 12561831 12561914 -108695616 + L2a LINE L2 2493 2569 -850 1 680 519 323 116 49 chr12 12562185 12562572 -108694958 + L2a LINE L2 2979 3391 -35 1 680 1267 127 102 0 chr12 12562606 12562811 -108694719 - URR1A DNA MER1_type 0 226 1 1 680 473 271 27 40 chr12 12563079 12563229 -108694301 + RSINE1 SINE B4 17 164 -1 1 680 21 0 0 0 chr12 12563265 12563286 -108694244 + AT_rich Low_complexity Low_complexity 1 21 0 1 680 289 149 0 41 chr12 12564005 12564054 -108693476 - L1MEd LINE L1 -4893 1226 1180 1 680 260 380 9 9 chr12 12564847 12564956 -108692574 - MTE-int LTR MaLR -36 1544 1436 1 680 953 174 107 24 chr12 12564994 12565200 -108692330 + URR1A DNA MER1_type 1 223 -3 1 680 513 284 107 38 chr12 12565249 12565574 -108691956 + ORR1E LTR MaLR 1 341 -33 1 680 659 306 33 88 chr12 12565597 12565669 -108691861 + MLT1B LTR MaLR 46 108 -282 1 680 1036 128 86 17 chr12 12565669 12565844 -108691686 + B2_Mm2 SINE B2 1 187 -8 1 680 659 306 33 88 chr12 12565844 12566136 -108691394 + MLT1B LTR MaLR 109 390 0 1 680 288 130 0 0 chr12 12566461 12566507 -108691023 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1 680 351 113 0 0 chr12 12566507 12566560 -108690970 + (TGG)n Simple_repeat Simple_repeat 3 55 0 1 680 180 161 0 0 chr12 12566562 12566593 -108690937 + MIR SINE MIR 147 177 -85 1 680 402 244 16 39 chr12 12567032 12567160 -108690370 + GA-rich Low_complexity Low_complexity 2 126 0 1 680 261 286 60 20 chr12 12567919 12568019 -108689511 + L1MC4a LINE L1 6480 6583 -1299 1 680 333 0 0 0 chr12 12568030 12568067 -108689463 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 680 573 15 0 0 chr12 12568067 12568132 -108689398 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 680 1053 189 69 5 chr12 12568330 12568532 -108688998 + B3 SINE B2 1 215 -1 1 680 514 261 296 105 chr12 12569390 12569658 -108687872 - MTE2a LTR MaLR -2 377 59 1 680 333 0 0 0 chr12 12569916 12569953 -108687577 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 680 787 302 37 95 chr12 12569981 12570277 -108687253 - B4A SINE B4 -4 288 10 1 680 245 51 0 25 chr12 12570412 12570452 -108687078 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 680 263 224 35 0 chr12 12570452 12570510 -108687020 - ID_B1 SINE B4 -11 213 154 1 680 2072 129 11 26 chr12 12570510 12570634 -108686896 - ORR1A1 LTR MaLR 0 346 230 1 680 2879 9 3 0 chr12 12570634 12570955 -108686575 + RLTRETN_Mm LTR ERVK 1 322 0 1 680 2072 129 11 26 chr12 12570955 12571181 -108686349 - ORR1A1 LTR MaLR -117 229 1 1 680 369 264 69 39 chr12 12571181 12571307 -108686223 - ID_B1 SINE B4 -66 158 29 1 680 620 197 172 0 chr12 12571444 12571566 -108685964 + B1_Mur4 SINE Alu 1 143 -7 1 680 212 0 36 0 chr12 12571652 12571680 -108685850 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 680 701 140 9 0 chr12 12572005 12572119 -108685411 + B1_Mur2 SINE Alu 15 129 -20 1 680 216 0 0 0 chr12 12572126 12572150 -108685380 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 680 297 229 52 52 chr12 12572762 12572877 -108684653 - Lx8 LINE L1 -1 7472 7358 1 680 711 35 0 0 chr12 12572877 12572963 -108684567 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 680 701 253 19 6 chr12 12573121 12573280 -108684250 - B3A SINE B2 -36 162 2 1 680 226 296 121 43 chr12 12574137 12574278 -108683252 - MIR3 SINE MIR -96 172 21 1 680 402 359 11 11 chr12 12574604 12574787 -108682743 + MIRb SINE MIR 53 235 -33 1 680 245 297 79 0 chr12 12575535 12575636 -108681894 + L1M5 LINE L1 5596 5704 -536 1 680 333 0 0 0 chr12 12576831 12576868 -108680662 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 680 465 19 0 0 chr12 12576868 12576921 -108680609 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 680 479 302 12 47 chr12 12576923 12577093 -108680437 - B3A SINE B2 -34 164 1 1 680 1138 196 27 0 chr12 12577572 12577791 -108679739 + URR1B DNA MER1_type 1 225 0 1 680 1123 266 62 19 chr12 12579034 12579359 -108678171 + ORR1E LTR MaLR 1 339 -20 1 680 1087 86 18 6 chr12 12579566 12579730 -108677800 + B2_Mm2 SINE B2 1 166 -29 1 680 198 0 0 0 chr12 12579789 12579811 -108677719 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 680 841 267 5 10 chr12 12580029 12580222 -108677308 + B3 SINE B2 1 192 -24 1 680 459 0 0 0 chr12 12580222 12580273 -108677257 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 680 226 227 0 0 chr12 12580336 12580380 -108677150 - L1M2 LINE L1 -409 5891 5848 1 680 242 235 162 84 chr12 12580389 12580556 -108676974 + MTC-int LTR MaLR 921 1100 -158 1 680 977 266 98 33 chr12 12580635 12581015 -108676515 + MTD LTR MaLR 20 405 -14 1 680 286 247 0 0 chr12 12581054 12581131 -108676399 - L1M2 LINE L1 -968 5175 5099 1 680 1487 245 92 0 chr12 12581160 12581507 -108676023 + MTE2b LTR MaLR 1 379 0 1 680 1657 286 86 17 chr12 12581970 12582601 -108674929 - L1MB4 LINE L1 0 6180 5507 1 681 192 350 0 36 chr12 12586118 12586201 -108671329 - MIR3 SINE MIR -10 198 119 1 681 291 270 191 0 chr12 12586822 12586911 -108670619 + PB1D9 SINE Alu 2 107 -13 1 681 306 0 0 0 chr12 12586914 12586948 -108670582 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 681 186 103 0 0 chr12 12587421 12587450 -108670080 + (G)n Simple_repeat Simple_repeat 1 29 0 1 681 232 322 73 41 chr12 12588010 12588062 -108669468 + MIR3 SINE MIR 33 84 -124 1 681 234 0 0 0 chr12 12588062 12588088 -108669442 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 681 232 322 73 41 chr12 12588088 12588158 -108669372 + MIR3 SINE MIR 85 159 -49 1 681 255 286 0 41 chr12 12590480 12590553 -108666977 - BC1_Mm scRNA scRNA -60 92 23 1 681 687 35 0 0 chr12 12590588 12590674 -108666856 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 681 350 317 41 128 chr12 12590698 12591017 -108666513 - B4A SINE B4 0 292 2 1 681 553 250 15 8 chr12 12591534 12591667 -108665863 + B1_Mur1 SINE Alu 14 147 -2 1 681 1103 65 0 0 chr12 12591890 12592029 -108665501 - B1_Mus1 SINE Alu -9 139 1 1 681 831 57 25 0 chr12 12594604 12594726 -108662804 + (GA)n Simple_repeat Simple_repeat 2 126 0 1 681 446 250 194 22 chr12 12596541 12596721 -108660809 + RMER15 LTR ERVL 352 562 -13 1 681 267 31 0 0 chr12 12598263 12598295 -108659235 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 1 681 243 0 0 0 chr12 12598295 12598321 -108659209 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 1 681 1221 106 0 0 chr12 12598322 12598502 -108659028 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1 681 180 320 13 51 chr12 12602200 12602279 -108655251 - MER5A DNA MER1_type -14 175 100 1 681 594 278 39 39 chr12 12602330 12602510 -108655020 + MER20 DNA MER1_type 1 180 -39 1 681 200 274 96 0 chr12 12603018 12603091 -108654439 - MIRc SINE MIR -30 238 159 1 681 1106 141 135 5 chr12 12603428 12603628 -108653902 - URR1A DNA MER1_type 0 226 1 1 681 808 267 74 48 chr12 12603762 12604033 -108653497 - B4A SINE B4 -12 280 3 1 681 276 30 0 0 chr12 12604148 12604181 -108653349 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 681 270 106 0 0 chr12 12604556 12604603 -108652927 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 1 681 222 317 0 48 chr12 12604765 12604828 -108652702 - B4A SINE B4 -152 140 81 1 681 504 299 166 17 chr12 12606529 12606818 -108650712 - MLT1D LTR MaLR -173 332 1 1 681 189 0 0 0 chr12 12607274 12607295 -108650235 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 681 245 232 58 0 chr12 12607302 12607371 -108650159 - ORR1E LTR MaLR -194 165 93 1 681 721 32 64 0 chr12 12607703 12607828 -108649702 + (TC)n Simple_repeat Simple_repeat 1 133 0 1 681 1188 79 0 17 chr12 12607828 12608009 -108649521 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 1 681 225 0 0 0 chr12 12608012 12608037 -108649493 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 681 418 131 76 0 chr12 12608067 12608212 -108649318 + CT-rich Low_complexity Low_complexity 1 156 0 1 681 1407 238 45 33 chr12 12608234 12608633 -108648897 - MTD LTR MaLR -15 404 1 1 681 500 222 68 53 chr12 12608741 12608874 -108648656 + B3A SINE B2 1 135 -63 1 681 668 166 16 4 chr12 12608902 12609044 -108648486 - B1_Mus1 SINE Alu -2 146 6 1 681 31 26 0 0 chr12 12609164 12609202 -108648328 + AT_rich Low_complexity Low_complexity 1 38 0 1 681 424 290 79 62 chr12 12609218 12609586 -108647944 + L1MC5 LINE L1 7540 7913 -48 1 681 795 225 0 0 chr12 12610613 12610755 -108646775 - B1_Mur4 SINE Alu -7 143 2 1 681 237 288 0 0 chr12 12610759 12610825 -108646705 - ORR1E-int LTR MaLR -29 1551 1486 1 681 400 308 94 35 chr12 12610972 12611228 -108646302 - ORR1E LTR MaLR -10 349 79 1 681 2734 305 106 72 chr12 12611216 12611625 -108645905 - ORR1E-int LTR MaLR -45 1535 1147 1 681 230 0 33 0 chr12 12611625 12611655 -108645875 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 681 2856 306 104 70 chr12 12611655 12612725 -108644805 - ORR1E-int LTR MaLR -434 1146 6 1 681 363 316 101 65 chr12 12612731 12613039 -108644491 - ORR1E LTR MaLR -5 354 36 1 681 2616 117 60 12 chr12 12613051 12613465 -108644065 + Lx3B LINE L1 6540 6973 0 1 681 993 102 7 45 chr12 12613473 12613627 -108643903 + B1_Mus1 SINE Alu 1 148 0 1 681 390 256 148 15 chr12 12614114 12614249 -108643281 + L1MC3 LINE L1 7317 7469 -316 1 681 551 281 109 30 chr12 12614491 12614693 -108642837 + B4A SINE B4 31 248 -44 1 681 23 0 0 0 chr12 12615103 12615126 -108642404 + AT_rich Low_complexity Low_complexity 1 23 0 1 681 624 287 6 0 chr12 12615255 12615412 -108642118 + RSINE1 SINE B4 4 161 -4 1 681 799 223 0 0 chr12 12615960 12616108 -108641422 + B1_Mus1 SINE Alu 1 148 0 2 681 696 270 45 5 chr12 12616599 12616800 -108640730 + B3 SINE B2 8 216 0 2 681 22 0 0 0 chr12 12618408 12618430 -108639100 + AT_rich Low_complexity Low_complexity 1 22 0 2 681 1050 187 141 0 chr12 12618748 12618946 -108638584 + URR1A DNA MER1_type 1 226 0 2 681 567 289 53 5 chr12 12619597 12619785 -108637745 + Charlie25 DNA MER1_type 13 209 -2315 2 681 700 313 53 53 chr12 12620008 12620345 -108637185 + MER21B LTR ERV1 1 337 -526 2 681 567 307 132 56 chr12 12620381 12620736 -108636794 + MER21B LTR ERV1 428 809 -54 2 681 685 311 88 6 chr12 12621043 12621363 -108636167 + Charlie25 DNA MER1_type 627 972 -1552 2 681 889 192 147 0 chr12 12621535 12621712 -108635818 + B3 SINE B2 4 206 -10 2 681 221 245 0 0 chr12 12622146 12622199 -108635331 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 681 356 276 104 7 chr12 12622259 12622394 -108635136 + Charlie25 DNA MER1_type 1867 2014 -510 2 681 428 293 137 31 chr12 12624128 12624420 -108633110 - MLT1D LTR MaLR 0 505 183 2 681 222 176 0 0 chr12 12624420 12624471 -108633059 + CT-rich Low_complexity Low_complexity 1 51 0 2 681 610 274 12 30 chr12 12624475 12624644 -108632886 - B3 SINE B2 -6 210 45 2 681 1591 222 71 13 chr12 12624660 12625056 -108632474 + MTD LTR MaLR 1 419 0 2 681 598 267 30 0 chr12 12625073 12625238 -108632292 - MLT1D LTR MaLR -311 194 25 2 681 527 260 53 30 chr12 12625395 12625526 -108632004 + B3A SINE B2 3 136 -62 2 681 609 52 0 0 chr12 12625526 12625603 -108631927 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 681 427 284 89 106 chr12 12626381 12626739 -108630791 - ORR1E LTR MaLR -5 354 3 2 681 264 413 0 0 chr12 12626872 12627010 -108630520 + MIRb SINE MIR 131 268 0 2 681 438 20 0 0 chr12 12629823 12629874 -108627656 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 681 698 262 124 27 chr12 12630727 12630986 -108626544 + B4 SINE B4 9 292 0 2 681 300 161 12 24 chr12 12630992 12631075 -108626455 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 681 226 246 0 0 chr12 12631539 12631596 -108625934 + T-rich Low_complexity Low_complexity 1 57 0 2 681 2150 186 23 0 chr12 12632921 12633319 -108624211 + MTC LTR MaLR 1 407 -14 2 681 1502 58 21 0 chr12 12633619 12633808 -108623722 + B2_Mm1a SINE B2 1 193 0 2 681 185 235 0 0 chr12 12634183 12634217 -108623313 + MIRc SINE MIR 115 148 -120 2 681 261 0 0 0 chr12 12634741 12634770 -108622760 + (T)n Simple_repeat Simple_repeat 1 29 0 2 681 237 315 204 7 chr12 12635119 12635266 -108622264 - MER5A DNA MER1_type 0 189 14 2 681 26 30 0 0 chr12 12635801 12635834 -108621696 + AT_rich Low_complexity Low_complexity 1 33 0 2 681 23 0 0 0 chr12 12635862 12635885 -108621645 + AT_rich Low_complexity Low_complexity 1 23 0 2 681 720 23 0 0 chr12 12636324 12636410 -108621120 + (TTTTG)n Simple_repeat Simple_repeat 2 87 0 2 681 378 0 0 0 chr12 12636411 12636453 -108621077 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 681 759 145 89 32 chr12 12636518 12636675 -108620855 + MTB_Mm LTR MaLR 1 166 -241 2 681 453 300 0 0 chr12 12636707 12636817 -108620713 - ID_B1 SINE B4 -37 187 78 2 681 1223 149 45 9 chr12 12636809 12637033 -108620497 + MTB_Mm LTR MaLR 173 404 -3 2 681 387 127 0 0 chr12 12637102 12637165 -108620365 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 681 487 304 92 29 chr12 12637565 12637738 -108619792 - ID_B1 SINE B4 -39 185 2 2 681 275 292 57 16 chr12 12637788 12637910 -108619620 - Charlie5 DNA MER1_type -2489 135 9 2 681 426 20 0 0 chr12 12639359 12639410 -108618120 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 681 686 205 125 77 chr12 12639424 12639672 -108617858 - RMER10A LTR ERVL -181 261 2 2 681 2139 153 53 8 chr12 12639779 12640174 -108617356 - MTC LTR MaLR -8 413 1 2 681 4282 159 178 22 chr12 12640174 12640928 -108616602 - MTC-int LTR MaLR 0 1258 394 2 681 1153 88 0 0 chr12 12640928 12641075 -108616455 - B1_Mus1 SINE Alu 0 148 2 2 681 4282 159 178 22 chr12 12641075 12641397 -108616133 - MTC-int LTR MaLR -865 393 14 2 681 814 186 29 51 chr12 12641405 12641652 -108615878 - MTC LTR MaLR -8 413 156 2 681 606 285 82 48 chr12 12641679 12641948 -108615582 + B4 SINE B4 3 280 -12 2 681 396 0 0 0 chr12 12641955 12641999 -108615531 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 681 654 25 0 0 chr12 12642124 12642204 -108615326 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 681 218 273 11 64 chr12 12642275 12642369 -108615161 + MIRb SINE MIR 130 218 -50 2 681 242 79 47 16 chr12 12642711 12642775 -108614755 + (TTTTTG)n Simple_repeat Simple_repeat 2 67 0 2 681 204 154 0 25 chr12 12642817 12642857 -108614673 + T-rich Low_complexity Low_complexity 2 40 0 2 681 446 196 122 0 chr12 12644569 12644676 -108612854 + MER5A DNA MER1_type 24 143 -46 2 681 222 193 16 25 chr12 12645290 12645418 -108612112 + GA-rich Low_complexity Low_complexity 1 126 0 2 681 450 0 0 0 chr12 12645922 12645972 -108611558 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2 681 485 157 73 9 chr12 12646082 12646191 -108611339 - B1_Mur2 SINE Alu 0 149 34 2 681 201 74 0 0 chr12 12646899 12646926 -108610604 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 681 216 0 0 0 chr12 12647309 12647333 -108610197 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 681 1274 263 98 18 chr12 12648246 12648647 -108608883 + Lx5 LINE L1 6482 6897 -563 2 681 22 0 0 0 chr12 12648724 12648746 -108608784 + AT_rich Low_complexity Low_complexity 1 22 0 2 681 621 61 0 0 chr12 12648746 12648828 -108608702 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 2 681 299 264 97 26 chr12 12648979 12649092 -108608438 + RSINE1 SINE B4 43 163 -2 2 681 21 0 0 0 chr12 12649359 12649380 -108608150 + AT_rich Low_complexity Low_complexity 1 21 0 2 681 448 184 0 88 chr12 12651169 12651282 -108606248 + RSINE1 SINE B4 3 105 -60 2 681 333 0 0 0 chr12 12651306 12651343 -108606187 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 681 1094 146 0 134 chr12 12651724 12651970 -108605560 + URR1B DNA MER1_type 12 224 -1 2 681 180 133 33 0 chr12 12652060 12652090 -108605440 - L2b LINE L2 -17 3358 3328 2 681 279 0 0 0 chr12 12652602 12652633 -108604897 + (TTGG)n Simple_repeat Simple_repeat 4 34 0 2 681 419 279 41 41 chr12 12652633 12652769 -108604761 - B1F2 SINE Alu -10 139 1 2 681 750 261 65 31 chr12 12653639 12653853 -108603677 + B4A SINE B4 1 222 -70 2 681 365 306 104 0 chr12 12653853 12653997 -108603533 + RSINE1 SINE B4 4 162 -3 2 681 231 322 0 0 chr12 12654111 12654170 -108603360 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 681 483 335 78 18 chr12 12654206 12654601 -108602929 + L1M5 LINE L1 5339 5757 -367 2 681 183 125 0 0 chr12 12654615 12654647 -108602883 - MIRm SINE MIR -4 272 241 2 681 519 123 0 0 chr12 12654903 12654984 -108602546 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 681 437 241 69 49 chr12 12655453 12655597 -108601933 + ID_B1 SINE B4 77 223 -1 2 681 409 169 0 98 chr12 12655930 12656022 -108601508 - ID4_ SINE ID 0 83 1 2 681 761 321 103 61 chr12 12656375 12656829 -108600701 - MER82 DNA MER2_type -3 650 162 2 681 1000 127 0 26 chr12 12656829 12656983 -108600547 - B1_Mur4 SINE Alu 0 150 1 2 681 761 321 103 61 chr12 12656983 12657152 -108600378 - MER82 DNA MER2_type -492 161 1 2 681 3318 56 2 0 chr12 12657573 12657968 -108599562 - MTA_Mm LTR MaLR 0 396 1 2 681 963 205 28 23 chr12 12660619 12660834 -108596696 + B3 SINE B2 1 216 0 2 681 742 51 0 0 chr12 12661352 12661450 -108596080 + B1_Mus2 SINE Alu 47 144 -3 2 681 482 0 17 0 chr12 12661450 12661508 -108596022 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 681 180 0 0 0 chr12 12661998 12662018 -108595512 + (G)n Simple_repeat Simple_repeat 1 20 0 2 681 274 183 28 0 chr12 12663132 12663203 -108594327 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 2 681 375 23 0 0 chr12 12663342 12663386 -108594144 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 681 228 291 73 60 chr12 12663721 12663871 -108593659 - MIRc SINE MIR -23 245 94 2 681 448 307 21 42 chr12 12664119 12664262 -108593268 + Lx8 LINE L1 7061 7200 -273 2 681 248 131 0 21 chr12 12664262 12664309 -108593221 + A-rich Low_complexity Low_complexity 4 49 0 2 681 932 123 0 6 chr12 12664310 12664466 -108593064 + (GGAGA)n Simple_repeat Simple_repeat 1 155 0 2 681 1319 163 33 0 chr12 12665060 12665275 -108592255 + URR1B DNA MER1_type 3 224 -1 2 681 2689 51 3 0 chr12 12665535 12665886 -108591644 + IAPEY_LTR LTR ERVK 1 352 -33 2 681 7206 113 7 9 chr12 12665906 12666967 -108590563 + IAPEy-int LTR ERVK 1 1058 -6455 2 681 22086 46 9 4 chr12 12666967 12669664 -108587866 + IAPEy-int LTR ERVK 4804 7513 0 2 681 3313 44 3 0 chr12 12669664 12670048 -108587482 + IAPEY_LTR LTR ERVK 1 385 0 2 681 738 326 78 67 chr12 12670187 12670621 -108586909 - MER82 DNA MER2_type -191 462 24 2 681 662 313 74 37 chr12 12672691 12673141 -108584389 + ORR1E LTR MaLR 20 349 -10 2 681 3564 18 2 0 chr12 12673466 12673861 -108583669 - MTA_Mm LTR MaLR 0 396 1 2 681 450 0 0 0 chr12 12673864 12673914 -108583616 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 681 529 296 27 72 chr12 12674423 12674450 -108583080 - CYRA11_Mm Unknown Y-chromosome -213 404 260 2 681 1419 151 5 0 chr12 12674450 12674668 -108582862 + URR1B DNA MER1_type 7 225 0 2 681 529 296 27 72 chr12 12674668 12674685 -108582845 - CYRA11_Mm Unknown Y-chromosome -213 259 155 2 681 237 235 59 0 chr12 12675668 12675719 -108581811 + L2b LINE L2 3322 3375 0 2 681 986 354 56 27 chr12 12676840 12677287 -108580243 + MER70A LTR ERVL 1 460 -12 2 681 1392 65 21 0 chr12 12677621 12677807 -108579723 + B2_Mm1a SINE B2 1 190 -3 2 681 200 205 0 0 chr12 12679839 12679878 -108577652 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 2 681 196 224 61 133 chr12 12680300 12680398 -108577132 - L4 LINE RTE -497 1532 1442 2 681 282 380 23 0 chr12 12681317 12681446 -108576084 + MIR3 SINE MIR 68 199 -9 2 681 306 50 0 0 chr12 12682107 12682147 -108575383 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 2 681 335 326 23 15 chr12 12682882 12683013 -108574517 + MER63D DNA AcHobo 282 413 -648 2 681 351 0 0 0 chr12 12684493 12684532 -108572998 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 681 587 308 65 71 chr12 12684543 12684837 -108572693 - B4 SINE B4 0 292 1 3 681 248 371 0 0 chr12 12685232 12685329 -108572201 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 681 184 279 48 48 chr12 12685415 12685498 -108572032 + L3 LINE CR1 3788 3870 -619 3 681 270 0 0 0 chr12 12686162 12686192 -108571338 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 681 476 236 63 31 chr12 12686200 12686327 -108571203 - RSINE1 SINE B4 -33 132 2 3 681 374 254 80 51 chr12 12686849 12686986 -108570544 - ID_B1 SINE B4 -83 141 1 3 681 204 163 0 0 chr12 12687229 12687272 -108570258 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 681 21 71 0 0 chr12 12687852 12687894 -108569636 + GC_rich Low_complexity Low_complexity 1 42 0 3 681 238 258 75 0 chr12 12688413 12688506 -108569024 + MLT1J1 LTR MaLR 342 441 -3 3 681 257 352 70 53 chr12 12688555 12688783 -108568747 - L2b LINE L2 -97 3278 3047 3 681 235 295 90 0 chr12 12689314 12689392 -108568138 - AmnSINE1 SINE SINE -451 124 40 3 681 331 206 151 0 chr12 12689344 12689417 -108568113 - 5S rRNA rRNA -31 90 7 3 681 285 322 132 13 chr12 12689748 12689899 -108567631 - MIRb SINE MIR -28 234 66 3 681 267 308 126 33 chr12 12690152 12690303 -108567227 - MIRb SINE MIR -82 186 22 3 681 189 0 0 0 chr12 12692727 12692748 -108564782 + (A)n Simple_repeat Simple_repeat 1 21 0 3 681 236 258 29 29 chr12 12692977 12693045 -108564485 - MER45B DNA Tip100 -5 1035 968 3 681 823 163 7 7 chr12 12693049 12693185 -108564345 + B1_Mur4 SINE Alu 2 137 -13 3 681 1314 124 16 0 chr12 12693791 12693984 -108563546 - URR1A DNA MER1_type -30 196 1 3 681 456 321 28 70 chr12 12693984 12694280 -108563250 + MTEa LTR MaLR 86 375 -4 3 681 847 320 80 58 chr12 12694286 12694963 -108562567 + L1ME1 LINE L1 5368 6059 -1726 3 681 739 235 128 0 chr12 12695084 12695263 -108562267 + B3 SINE B2 1 202 -14 3 681 329 333 239 24 chr12 12695309 12695598 -108561932 - MLT1J LTR MaLR -60 452 102 3 681 249 345 6 35 chr12 12695715 12695886 -108561644 + L2 LINE L2 2393 2558 -861 3 681 704 253 99 66 chr12 12696198 12696380 -108561150 + B3 SINE B2 3 190 -5 3 681 865 126 22 7 chr12 12696451 12696587 -108560943 - B1_Mus1 SINE Alu 0 148 11 3 681 752 117 19 7 chr12 12698295 12698450 -108559080 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 3 681 559 293 334 34 chr12 12699355 12699660 -108557870 - MLT1C LTR MaLR -19 448 53 3 681 360 260 87 39 chr12 12700283 12700387 -108557143 - B4A SINE B4 -183 109 1 3 681 301 186 17 0 chr12 12701945 12702004 -108555526 + ID SINE ID 3 62 -162 3 681 553 261 29 75 chr12 12702005 12702179 -108555351 + B4 SINE B4 3 168 -124 3 681 282 115 0 0 chr12 12702195 12702247 -108555283 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 681 735 281 12 0 chr12 12702247 12702407 -108555123 + ID_B1 SINE B4 60 221 -3 3 681 231 309 30 89 chr12 12702291 12702426 -108555104 - YREP_Mm Unknown Unknown -1518 294 168 3 681 468 0 0 0 chr12 12702553 12702605 -108554925 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 681 1034 238 85 81 chr12 12703068 12703375 -108554155 - MTEb LTR MaLR -8 371 64 3 681 359 327 52 17 chr12 12703379 12703553 -108553977 - MLT2D LTR ERVL -167 247 68 3 681 230 277 93 35 chr12 12704070 12704156 -108553374 + MLT1L LTR MaLR 219 309 -301 3 681 1066 259 89 108 chr12 12704782 12705163 -108552367 - MTE2a LTR MaLR -5 374 1 3 681 225 0 0 0 chr12 12705568 12705593 -108551937 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 681 486 0 0 0 chr12 12705593 12705646 -108551884 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 681 567 268 41 62 chr12 12706020 12706215 -108551315 - MLT1A LTR MaLR -10 364 174 3 681 346 319 0 9 chr12 12706215 12706329 -108551201 + GA-rich Low_complexity Low_complexity 4 116 0 3 681 370 282 88 88 chr12 12706333 12706527 -108551003 - MLT1A LTR MaLR -213 195 2 3 681 878 65 0 0 chr12 12706844 12706951 -108550579 + U6 snRNA snRNA 1 107 0 3 681 4659 35 2 18 chr12 12706952 12707512 -108550018 + L1Md_F2 LINE L1 6032 6582 0 3 681 799 307 92 17 chr12 12707535 12707883 -108549647 + Lx9 LINE L1 7178 7551 -93 3 681 253 338 36 22 chr12 12708136 12708275 -108549255 + L2c LINE L2 3209 3349 -38 3 681 387 327 78 64 chr12 12708373 12708746 -108548784 + L2c LINE L2 2993 3370 -17 3 681 197 159 204 0 chr12 12709307 12709351 -108548179 + L2 LINE L2 2590 2642 -777 3 681 270 0 0 0 chr12 12710090 12710120 -108547410 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 681 180 111 0 0 chr12 12710122 12710149 -108547381 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 681 242 290 77 115 chr12 12710369 12710525 -108547005 + MLT1I LTR MaLR 262 411 0 3 681 259 295 108 15 chr12 12710729 12710880 -108546650 - L2c LINE L2 -3 3372 3233 3 681 275 261 14 28 chr12 12711004 12711069 -108546461 + ID4 SINE ID 14 79 -4 3 681 549 80 0 0 chr12 12711069 12711144 -108546386 + (CAT)n Simple_repeat Simple_repeat 2 76 0 3 681 180 0 0 0 chr12 12711164 12711184 -108546346 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 681 264 321 38 0 chr12 12711381 12711487 -108546043 - PB1D10 SINE Alu -5 112 3 3 681 847 193 14 0 chr12 12711633 12711773 -108545757 - B1_Mur2 SINE Alu -7 142 1 3 681 183 42 0 0 chr12 12711888 12711912 -108545618 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 681 251 299 79 61 chr12 12712441 12712555 -108544975 + MIR SINE MIR 36 151 -111 3 681 289 258 92 7 chr12 12712607 12712749 -108544781 + ID_B1 SINE B4 1 184 -40 3 85 636 285 98 5 chr12 12713843 12714037 -108543493 - B3 SINE B2 -2 214 3 3 682 382 299 93 49 chr12 12714607 12714769 -108542761 - B4A SINE B4 -123 169 1 3 682 897 10 0 0 chr12 12715001 12715103 -108542427 + (GGGAA)n Simple_repeat Simple_repeat 4 105 0 3 682 229 266 0 30 chr12 12715333 12715399 -108542131 + GA-rich Low_complexity Low_complexity 1 64 0 3 682 532 315 20 14 chr12 12715399 12715547 -108541983 + B1F1 SINE Alu 1 149 0 3 682 771 261 90 57 chr12 12717692 12717936 -108539594 - B4 SINE B4 -40 252 1 3 682 257 89 0 22 chr12 12718505 12718551 -108538979 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 3 682 379 225 281 0 chr12 12719153 12719242 -108538288 - B1_Mur3 SINE Alu -33 116 3 3 682 488 229 16 51 chr12 12719245 12719398 -108538132 - B3 SINE B2 0 198 52 3 682 298 180 48 16 chr12 12719983 12720045 -108537485 + B4 SINE B4 14 77 -215 3 682 1039 94 10 0 chr12 12720056 12720258 -108537272 + (TG)n Simple_repeat Simple_repeat 1 204 0 3 682 855 109 20 14 chr12 12720281 12720580 -108536950 + (TG)n Simple_repeat Simple_repeat 1 301 0 3 682 422 49 16 0 chr12 12720603 12720664 -108536866 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 682 377 210 0 0 chr12 12720719 12720781 -108536749 + B4 SINE B4 172 233 -59 3 682 655 203 90 8 chr12 12720787 12720807 -108536723 - B1_Mur2 SINE Alu -1 148 129 3 682 234 0 0 0 chr12 12720807 12720833 -108536697 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 682 655 203 90 8 chr12 12720833 12720946 -108536584 - B1_Mur2 SINE Alu -21 128 5 3 682 234 0 0 0 chr12 12720959 12720985 -108536545 + (T)n Simple_repeat Simple_repeat 1 26 0 3 682 1016 41 0 0 chr12 12720985 12721108 -108536422 - B1_Mm SINE Alu 0 147 25 3 682 699 69 0 0 chr12 12721186 12721288 -108536242 + (CA)n Simple_repeat Simple_repeat 2 103 0 3 682 1008 231 79 29 chr12 12723209 12723486 -108534044 + B4 SINE B4 1 291 -1 3 682 570 98 0 0 chr12 12723489 12723571 -108533959 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 682 507 256 30 24 chr12 12723761 12723925 -108533605 + MER46C DNA MER2_type 163 327 -11 3 682 610 167 0 11 chr12 12723997 12724179 -108533351 + CT-rich Low_complexity Low_complexity 1 180 0 3 682 497 123 9 0 chr12 12724214 12724320 -108533210 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 682 315 0 0 0 chr12 12724320 12724355 -108533175 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 682 245 289 19 58 chr12 12724447 12724550 -108532980 - MTEa LTR MaLR -13 366 268 3 682 378 57 0 0 chr12 12724769 12724822 -108532708 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 3 682 479 312 58 52 chr12 12724871 12725283 -108532247 + L1MB5 LINE L1 5682 6093 -81 3 682 561 256 50 91 chr12 12726165 12726406 -108531124 - B4 SINE B4 -38 254 24 3 682 186 128 0 0 chr12 12726874 12726913 -108530617 + (T)n Simple_repeat Simple_repeat 1 39 0 3 682 354 250 111 0 chr12 12728224 12728332 -108529198 + PB1 SINE Alu 6 125 -2 3 682 255 267 0 0 chr12 12728345 12728405 -108529125 + ID4 SINE ID 9 68 -15 3 682 924 172 126 75 chr12 12728952 12729034 -108528496 - URR1A DNA MER1_type 0 226 145 3 682 766 161 48 20 chr12 12729034 12729180 -108528350 + B1_Mur4 SINE Alu 1 150 0 3 682 924 172 126 75 chr12 12729180 12729311 -108528219 - URR1A DNA MER1_type -82 144 2 3 682 204 97 0 0 chr12 12730178 12730209 -108527321 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 682 251 206 3 78 chr12 12730505 12730584 -108526946 + MIRm SINE MIR 91 165 -97 3 682 270 262 135 10 chr12 12732517 12732621 -108524909 - MIRc SINE MIR -116 152 36 3 682 198 103 0 0 chr12 12733218 12733247 -108524283 + (A)n Simple_repeat Simple_repeat 1 29 0 3 682 182 138 33 33 chr12 12733612 12733672 -108523858 + (TATG)n Simple_repeat Simple_repeat 3 62 0 3 682 513 316 83 60 chr12 12734056 12734322 -108523208 + B4A SINE B4 3 274 -18 3 682 2769 270 77 36 chr12 12734446 12735308 -108522222 - Lx8 LINE L1 -84 7389 6493 3 682 632 83 9 27 chr12 12735346 12735458 -108522072 + (TA)n Simple_repeat Simple_repeat 2 111 0 3 682 478 259 118 45 chr12 12735518 12735696 -108521834 + B3A SINE B2 2 192 -6 3 682 1255 41 0 0 chr12 12735719 12735865 -108521665 + B1_Mm SINE Alu 2 147 0 3 682 252 0 0 0 chr12 12735874 12735902 -108521628 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 682 507 33 0 0 chr12 12735902 12735962 -108521568 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 682 773 168 7 0 chr12 12736395 12736532 -108520998 + B1_Mur1 SINE Alu 6 143 -6 4 682 1087 63 28 0 chr12 12736760 12736903 -108520627 + B1_Mm SINE Alu 1 147 0 4 682 201 39 0 0 chr12 12736903 12736929 -108520601 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 682 413 306 97 44 chr12 12737989 12738372 -108519158 - L1MA5A LINE L1 -6 6294 5892 4 682 279 71 0 0 chr12 12738419 12738461 -108519069 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 682 1008 198 198 142 chr12 12738479 12738914 -108518616 - MT2A LTR ERVL -74 459 1 4 682 371 317 68 38 chr12 12738931 12739167 -108518363 - ORR1E LTR MaLR -21 338 96 4 682 955 265 82 104 chr12 12739339 12739854 -108517676 - L1MA5A LINE L1 -429 5868 5358 4 682 1047 205 28 5 chr12 12739854 12740065 -108517465 + B3 SINE B2 1 216 0 4 682 955 265 82 104 chr12 12740065 12740135 -108517395 - L1MA5A LINE L1 -940 5357 5296 4 682 374 347 48 24 chr12 12740300 12740507 -108517023 - Lx8 LINE L1 -189 7284 7073 4 682 341 225 50 0 chr12 12741197 12741277 -108516253 + B1F SINE Alu 53 136 -13 4 682 399 41 0 0 chr12 12741278 12741327 -108516203 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 682 192 167 0 0 chr12 12741327 12741375 -108516155 + GA-rich Low_complexity Low_complexity 1 48 0 4 682 299 209 46 8 chr12 12741641 12741728 -108515802 + MLT1A LTR MaLR 42 130 -244 4 682 495 218 0 0 chr12 12741889 12741976 -108515554 + B1_Mur3 SINE Alu 2 88 -61 4 682 326 100 0 118 chr12 12742123 12742191 -108515339 + B1F1 SINE Alu 90 149 0 4 682 620 276 111 45 chr12 12742451 12742739 -108514791 - ORR1E LTR MaLR -43 316 10 4 682 24 53 0 0 chr12 12742824 12742862 -108514668 + AT_rich Low_complexity Low_complexity 1 38 0 4 682 625 259 49 25 chr12 12742871 12743033 -108514497 - B3A SINE B2 -13 185 20 4 682 217 322 66 25 chr12 12743427 12743548 -108513982 - L2a LINE L2 -13 3413 3288 4 682 630 316 79 26 chr12 12744018 12744359 -108513171 - MLT1A0 LTR MaLR -3 362 4 4 682 538 243 19 0 chr12 12744515 12744622 -108512908 + PB1D10 SINE Alu 1 109 -8 4 682 504 236 7 26 chr12 12744784 12744937 -108512593 + B1F SINE Alu 1 148 0 4 682 393 22 0 0 chr12 12745955 12746001 -108511529 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 682 261 83 0 0 chr12 12746242 12746278 -108511252 + (T)n Simple_repeat Simple_repeat 1 36 0 4 682 21 36 0 0 chr12 12746740 12746768 -108510762 + AT_rich Low_complexity Low_complexity 1 28 0 4 682 486 300 33 0 chr12 12746811 12746961 -108510569 + RSINE1 SINE B4 8 162 -3 4 682 636 272 82 0 chr12 12746976 12747171 -108510359 + B3 SINE B2 2 212 -4 4 682 330 299 25 139 chr12 12747816 12748061 -108509469 - ID_B1 SINE B4 -2 222 6 4 682 230 357 62 0 chr12 12748062 12748174 -108509356 + L2b LINE L2 3254 3372 -3 4 682 695 307 83 68 chr12 12748713 12749168 -108508362 - MT2A LTR ERVL -71 462 1 4 682 787 215 20 0 chr12 12749959 12750108 -108507422 - ORR1E LTR MaLR -204 155 4 4 682 837 164 20 14 chr12 12751209 12751357 -108506173 + B1_Mur3 SINE Alu 1 149 0 4 682 1261 225 20 10 chr12 12751986 12752278 -108505252 - MTD LTR MaLR -20 399 105 4 682 616 194 15 15 chr12 12752289 12752420 -108505110 + B1_Mur4 SINE Alu 20 150 0 4 682 268 205 36 36 chr12 12752472 12752555 -108504975 - MTD LTR MaLR -299 120 6 4 682 1104 299 108 15 chr12 12752560 12753086 -108504444 + Lx9 LINE L1 7055 7629 -15 4 682 1544 194 88 35 chr12 12753310 12753710 -108503820 - MTC LTR MaLR 0 421 1 4 682 207 0 0 0 chr12 12754348 12754371 -108503159 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 4 682 1038 274 36 4 chr12 12754816 12755091 -108502439 - B4 SINE B4 -7 285 2 4 682 697 178 15 7 chr12 12755550 12755686 -108501844 - B1_Mur2 SINE Alu -1 148 12 4 682 541 259 22 178 chr12 12755755 12755793 -108501737 + B3A SINE B2 2 35 -163 4 682 2682 78 32 3 chr12 12755793 12756166 -108501364 + L1Md_F2 LINE L1 6196 6579 -3 4 682 541 259 22 178 chr12 12756166 12756357 -108501173 + B3A SINE B2 36 195 -3 4 682 694 50 10 10 chr12 12756389 12756489 -108501041 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 4 682 207 317 42 30 chr12 12756894 12757014 -108500516 - MIRb SINE MIR -92 176 62 4 682 654 166 0 0 chr12 12757073 12757248 -108500282 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 682 648 281 5 38 chr12 12757294 12757479 -108500051 + B4A SINE B4 114 292 0 4 682 200 79 53 0 chr12 12757479 12757517 -108500013 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 4 682 230 304 110 48 chr12 12758847 12758992 -108498538 - MIRc SINE MIR -30 238 85 4 682 515 279 82 61 chr12 12759060 12759403 -108498127 + ORR1E LTR MaLR 6 355 -4 4 682 4467 53 2 12 chr12 12759785 12760343 -108497187 - L1Md_T LINE L1 0 6582 6031 4 682 238 219 153 20 chr12 12761216 12761314 -108496216 + MIRm SINE MIR 144 254 -22 4 682 21 0 0 0 chr12 12762316 12762337 -108495193 + AT_rich Low_complexity Low_complexity 1 21 0 4 682 468 245 9 35 chr12 12762343 12762457 -108495073 - PB1D9 SINE Alu -8 112 2 4 682 532 200 9 28 chr12 12762479 12762587 -108494943 + B1_Mur3 SINE Alu 1 106 -43 4 682 334 104 0 0 chr12 12762595 12762643 -108494887 + HAL1-3A_ME LINE L1 1965 2012 -846 4 682 693 144 0 0 chr12 12762644 12762762 -108494768 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 682 536 239 28 35 chr12 12762769 12762912 -108494618 + B1F1 SINE Alu 1 142 -7 4 682 307 319 32 48 chr12 12762976 12763101 -108494429 + Tigger7 DNA MER2_type 2369 2491 0 4 682 726 191 15 0 chr12 12763418 12763549 -108493981 - MER94 DNA AcHobo 0 134 2 4 682 993 226 49 116 chr12 12764075 12764481 -108493049 + MTE2a LTR MaLR 1 379 0 4 682 3366 43 2 0 chr12 12765081 12765476 -108492054 - MTA_Mm LTR MaLR 0 396 1 4 682 3772 157 104 47 chr12 12765723 12766559 -108490971 - RMER19B LTR ERVK -18 884 1 4 682 1642 184 70 28 chr12 12767194 12767552 -108489978 - ORR1D1 LTR MaLR -1 373 1 4 682 306 0 0 0 chr12 12767790 12767824 -108489706 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 4 682 670 144 136 0 chr12 12767824 12767942 -108489588 - B1_Mur2 SINE Alu -13 136 3 4 682 204 311 43 32 chr12 12767942 12768035 -108489495 + MIRb SINE MIR 102 195 -73 4 682 932 146 0 0 chr12 12768281 12768418 -108489112 + B1_Mur4 SINE Alu 1 137 -13 4 682 267 31 0 0 chr12 12768418 12768450 -108489080 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 682 590 39 13 0 chr12 12769373 12769450 -108488080 + (GGAA)n Simple_repeat Simple_repeat 2 79 0 4 682 1099 154 124 0 chr12 12769505 12769706 -108487824 - URR1A DNA MER1_type 0 226 1 4 682 219 69 0 0 chr12 12770399 12770428 -108487102 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 682 219 139 0 0 chr12 12770828 12770864 -108486666 + (GGAGA)n Simple_repeat Simple_repeat 5 40 0 4 682 1308 79 0 0 chr12 12770864 12771042 -108486488 + (GGAAA)n Simple_repeat Simple_repeat 1 178 0 4 682 489 172 0 0 chr12 12771172 12771265 -108486265 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 682 180 0 0 0 chr12 12772955 12772975 -108484555 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4 682 567 0 0 0 chr12 12773609 12773672 -108483858 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 682 351 0 0 0 chr12 12773672 12773710 -108483820 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 682 890 244 194 18 chr12 12773787 12774183 -108483347 - MLT1C LTR MaLR -1 466 1 4 682 853 232 26 0 chr12 12774494 12774684 -108482846 - ID_B1 SINE B4 -1 223 29 4 682 568 190 0 49 chr12 12774678 12774800 -108482730 + B1_Mur3 SINE Alu 33 148 -1 4 682 827 279 0 5 chr12 12774818 12775023 -108482507 + B3 SINE B2 2 205 -11 4 682 713 270 12 19 chr12 12775876 12776038 -108481492 + RSINE1 SINE B4 2 162 -3 4 682 459 306 49 11 chr12 12776075 12776260 -108481270 + B3A SINE B2 1 192 -6 4 682 786 50 0 0 chr12 12776582 12776681 -108480849 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 4 682 501 198 10 0 chr12 12776685 12776781 -108480749 - B1_Mur2 SINE Alu -11 138 42 4 682 274 325 0 0 chr12 12776781 12776898 -108480632 + (CTG)n Simple_repeat Simple_repeat 3 119 0 4 682 293 156 0 0 chr12 12776856 12776901 -108480629 + (TCTCTG)n Simple_repeat Simple_repeat 3 47 0 4 682 250 171 0 0 chr12 12777145 12777186 -108480344 - MLT1H LTR MaLR 0 549 509 4 682 1430 140 18 13 chr12 12777274 12777498 -108480032 - URR1B DNA MER1_type 0 225 1 4 682 563 351 44 58 chr12 12777498 12777840 -108479690 - MLT1H LTR MaLR -197 352 16 4 682 368 258 109 136 chr12 12777861 12778085 -108479445 + LTR33A_ LTR ERVL 12 224 -279 4 682 235 250 175 0 chr12 12778635 12778715 -108478815 + PB1D10 SINE Alu 2 95 -22 4 682 432 288 42 0 chr12 12779072 12779190 -108478340 + ID_B1 SINE B4 5 127 -97 4 682 1243 97 0 11 chr12 12779330 12779507 -108478023 + B2_Mm2 SINE B2 1 175 -20 4 682 287 272 111 46 chr12 12779563 12779671 -108477859 - B1F SINE Alu -26 123 9 4 682 1138 92 16 75 chr12 12779750 12779793 -108477737 - B2_Mm2 SINE B2 0 195 163 4 682 201 74 0 0 chr12 12779793 12779820 -108477710 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 682 1138 92 16 75 chr12 12779820 12779964 -108477566 - B2_Mm2 SINE B2 -33 162 19 4 682 1251 41 0 0 chr12 12780088 12780235 -108477295 + B1_Mus1 SINE Alu 2 148 0 4 682 1371 70 48 5 chr12 12780593 12780780 -108476750 - B2_Mm2 SINE B2 0 195 1 4 682 243 235 31 0 chr12 12781118 12781216 -108476314 + CT-rich Low_complexity Low_complexity 2 102 0 4 682 327 78 0 0 chr12 12781553 12781604 -108475926 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 682 1156 59 0 0 chr12 12781604 12781740 -108475790 - B1_Mus2 SINE Alu -11 136 1 5 682 447 301 33 53 chr12 12782100 12782251 -108475279 - ID_B1 SINE B4 -56 168 21 5 682 1111 49 7 0 chr12 12782376 12782518 -108475012 + B1_Mm SINE Alu 5 147 0 5 682 442 202 0 0 chr12 12782600 12782679 -108474851 + URR1B DNA MER1_type 147 225 0 5 682 334 265 68 10 chr12 12782770 12782873 -108474657 - PB1D10 SINE Alu -8 109 1 5 682 184 316 101 0 chr12 12783109 12783188 -108474342 + L2c LINE L2 2978 3064 -323 5 682 768 22 0 0 chr12 12783387 12783477 -108474053 + (TC)n Simple_repeat Simple_repeat 1 90 0 5 682 198 270 52 53 chr12 12783970 12784045 -108473485 + MIRm SINE MIR 101 185 -77 5 682 199 333 13 13 chr12 12785277 12785353 -108472177 + L2 LINE L2 1465 1540 -1879 5 682 270 0 0 0 chr12 12785450 12785480 -108472050 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 682 396 0 0 0 chr12 12785480 12785523 -108472007 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 682 649 290 41 36 chr12 12785763 12786065 -108471465 - MTE2a LTR MaLR -7 372 6 5 682 218 284 99 99 chr12 12786955 12787127 -108470403 - MIR3 SINE MIR -5 203 32 5 682 243 329 26 0 chr12 12787437 12787522 -108470008 - L2b LINE L2 0 3387 3302 5 682 285 196 0 0 chr12 12788339 12788395 -108469135 + PB1D7 SINE Alu 1 56 -64 5 682 1168 200 10 5 chr12 12788465 12788666 -108468864 - B3 SINE B2 -14 202 1 5 682 362 261 61 92 chr12 12789194 12789325 -108468205 - LTR48B LTR ERV1 -517 127 1 5 682 182 324 210 0 chr12 12789342 12789518 -108468012 + MIR SINE MIR 29 241 -21 5 682 542 238 103 0 chr12 12790250 12790376 -108467154 + B1_Mur4 SINE Alu 4 142 -8 5 682 426 297 106 40 chr12 12791771 12791922 -108465608 + RSINE1 SINE B4 4 164 -1 5 682 21 0 0 0 chr12 12791992 12792013 -108465517 + AT_rich Low_complexity Low_complexity 1 21 0 5 682 517 235 26 9 chr12 12792120 12792236 -108465294 + B1F SINE Alu 18 135 -14 5 682 183 42 0 0 chr12 12792432 12792456 -108465074 + (A)n Simple_repeat Simple_repeat 1 24 0 5 682 500 278 69 7 chr12 12792465 12792610 -108464920 + B3A SINE B2 1 154 -44 5 682 1181 21 36 0 chr12 12792646 12792786 -108464744 + B1_Mus2 SINE Alu 3 147 0 5 682 398 274 34 42 chr12 12792792 12792910 -108464620 - B3 SINE B2 -1 215 99 5 682 511 206 21 0 chr12 12793005 12793121 -108464409 - B3A SINE B2 -69 124 1 5 682 389 109 16 0 chr12 12793143 12793207 -108464323 + (GGGA)n Simple_repeat Simple_repeat 4 68 0 5 682 423 0 0 0 chr12 12793674 12793721 -108463809 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 682 269 0 56 0 chr12 12794332 12794368 -108463162 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 682 652 122 191 24 chr12 12794368 12794485 -108463045 - B1_Mus1 SINE Alu -9 139 2 5 682 180 0 0 0 chr12 12795066 12795086 -108462444 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 5 682 1470 57 0 49 chr12 12796279 12796483 -108461047 - B2_Mm2 SINE B2 -1 194 1 5 682 1820 162 21 57 chr12 12796757 12797182 -108460348 - RMER17C LTR ERVK 0 410 1 5 682 1545 134 196 0 chr12 12797186 12797461 -108460069 + ORR1A4 LTR MaLR 1 329 0 5 682 1178 275 51 28 chr12 12797565 12797921 -108459609 - MTE2b LTR MaLR -13 366 3 5 682 207 114 0 0 chr12 12798606 12798641 -108458889 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 682 311 318 45 18 chr12 12799874 12799986 -108457544 + B4A SINE B4 27 141 -151 5 682 180 0 0 0 chr12 12801092 12801112 -108456418 + (A)n Simple_repeat Simple_repeat 1 20 0 5 682 398 274 40 57 chr12 12801144 12801268 -108456262 - RSINE1 SINE B4 -42 123 2 5 682 294 103 0 0 chr12 12801386 12801410 -108456120 + B1_Mus1 SINE Alu 1 39 -109 5 682 582 295 6 43 chr12 12801410 12801425 -108456105 + ID SINE ID 60 75 -149 5 682 979 56 42 0 chr12 12801425 12801568 -108455962 + (GGAGA)n Simple_repeat Simple_repeat 1 149 0 5 682 582 295 6 43 chr12 12801568 12801715 -108455815 + ID_B1 SINE B4 76 216 -8 5 682 1028 85 7 0 chr12 12801826 12801967 -108455563 - B1_Mm SINE Alu -5 142 1 5 682 632 139 0 15 chr12 12802295 12802426 -108455104 + CT-rich Low_complexity Low_complexity 4 132 0 5 682 1137 76 7 0 chr12 12802792 12802937 -108454593 + B1_Mus2 SINE Alu 2 147 0 5 682 348 24 0 0 chr12 12802946 12802987 -108454543 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 682 315 0 0 0 chr12 12803142 12803177 -108454353 + (CTG)n Simple_repeat Simple_repeat 2 36 0 5 682 285 276 93 17 chr12 12803238 12803356 -108454174 + MIRc SINE MIR 92 218 -50 5 682 222 331 16 0 chr12 12803980 12804060 -108453470 + L2c LINE L2 3075 3158 -229 5 682 250 235 71 36 chr12 12804418 12804502 -108453028 + MER103 DNA DNA 3 89 -77 5 682 197 319 145 0 chr12 12804771 12804840 -108452690 + L4 LINE RTE 1749 1827 -202 5 682 1299 53 0 0 chr12 12805114 12805400 -108452130 + (TG)n Simple_repeat Simple_repeat 1 286 0 5 682 670 253 130 30 chr12 12805472 12805672 -108451858 - ID_B1 SINE B4 -1 223 4 5 682 254 260 29 138 chr12 12805784 12805958 -108451572 - YREP_Mm Unknown Unknown -1478 334 180 5 682 948 63 0 16 chr12 12805834 12805962 -108451568 + B1_Mus1 SINE Alu 23 148 0 5 682 888 129 50 0 chr12 12806648 12806788 -108450742 - B1_Mus1 SINE Alu -1 147 1 5 682 509 90 2 4 chr12 12807735 12807809 -108449721 + B2_Mm2 SINE B2 6 78 -115 5 682 243 341 11 22 chr12 12807745 12807835 -108449695 + RSINE1 SINE B4 15 103 -62 5 682 1384 84 11 0 chr12 12807847 12808026 -108449504 + B2_Mm2 SINE B2 1 181 -14 5 682 184 243 0 0 chr12 12808048 12808085 -108449445 - L2c LINE L2 -222 3165 3129 5 682 460 136 0 22 chr12 12809761 12809851 -108447679 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 682 244 236 35 43 chr12 12809869 12809984 -108447546 + (CATA)n Simple_repeat Simple_repeat 4 117 0 5 682 235 168 43 34 chr12 12810003 12810120 -108447410 + (CATA)n Simple_repeat Simple_repeat 4 121 0 5 682 199 200 282 14 chr12 12810696 12810767 -108446763 - MIRb SINE MIR -132 136 47 5 682 1000 111 24 3 chr12 12811413 12811713 -108445817 + (TAGA)n Simple_repeat Simple_repeat 1 306 0 5 682 695 275 100 12 chr12 12811757 12812007 -108445523 + B4A SINE B4 3 274 -18 5 682 497 297 208 40 chr12 12812048 12812346 -108445184 - MLT2D LTR ERVL -66 348 1 5 682 675 120 0 0 chr12 12812892 12812984 -108444546 - B3 SINE B2 -124 92 1 5 682 538 191 0 0 chr12 12813082 12813171 -108444359 + B3 SINE B2 2 90 -126 5 682 415 347 44 29 chr12 12813496 12813701 -108443829 + MER58A DNA MER1_type 1 208 -16 5 682 254 228 0 0 chr12 12813892 12813949 -108443581 + (CATG)n Simple_repeat Simple_repeat 4 60 0 5 682 251 203 0 15 chr12 12813951 12814016 -108443514 + CT-rich Low_complexity Low_complexity 4 67 0 5 682 432 317 77 28 chr12 12814276 12814419 -108443111 - B4 SINE B4 -110 182 33 5 682 264 301 36 12 chr12 12814412 12814496 -108443034 + PB1D10 SINE Alu 32 117 0 5 682 366 359 52 29 chr12 12815232 12815404 -108442126 - MLT1B LTR MaLR -9 381 206 5 682 405 0 0 0 chr12 12815411 12815456 -108442074 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 682 683 284 107 44 chr12 12815516 12815741 -108441789 - B4A SINE B4 -46 246 8 5 682 1333 150 5 5 chr12 12815773 12815987 -108441543 - URR1A DNA MER1_type -8 218 5 5 682 353 252 26 18 chr12 12816004 12816117 -108441413 - MLT1B LTR MaLR -271 119 6 5 682 311 257 111 28 chr12 12816555 12816663 -108440867 - MER5A1 DNA MER1_type 0 166 50 5 682 224 54 54 0 chr12 12816669 12816706 -108440824 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 5 682 218 324 0 40 chr12 12818286 12818300 -108439230 + MIRm SINE MIR 206 219 -57 5 682 1058 173 119 0 chr12 12818300 12818502 -108439028 + URR1A DNA MER1_type 1 226 0 5 682 218 324 0 40 chr12 12818502 12818561 -108438969 + MIRm SINE MIR 220 276 0 5 682 1368 102 16 0 chr12 12818652 12818839 -108438691 - B2_Mm2 SINE B2 -4 191 2 5 682 256 211 88 0 chr12 12819270 12819327 -108438203 + MER81 DNA AcHobo 47 108 -6 5 682 224 214 0 0 chr12 12819730 12819772 -108437758 + (CAG)n Simple_repeat Simple_repeat 1 42 0 5 682 204 284 75 0 chr12 12820045 12820112 -108437418 + MIR SINE MIR 54 125 -137 5 682 601 197 162 0 chr12 12821226 12821343 -108436187 + B1_Mur2 SINE Alu 6 141 -8 5 682 681 246 0 0 chr12 12821888 12822026 -108435504 - B1F SINE Alu -9 140 3 5 682 423 0 0 0 chr12 12822254 12822301 -108435229 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 682 265 301 128 11 chr12 12822555 12822649 -108434881 + BC1_Mm scRNA scRNA 3 107 -45 5 682 541 216 241 0 chr12 12822754 12822916 -108434614 + B3 SINE B2 3 203 -13 5 682 213 196 0 0 chr12 12822916 12822962 -108434568 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 682 24 32 0 0 chr12 12822962 12822993 -108434537 + AT_rich Low_complexity Low_complexity 1 31 0 5 682 375 299 0 33 chr12 12823104 12823194 -108434336 + ID_B1 SINE B4 84 170 -54 5 682 331 356 0 50 chr12 12823194 12823225 -108434305 + PB1D10 SINE Alu 3 117 0 5 682 424 290 129 40 chr12 12823381 12823582 -108433948 - MER82 DNA MER2_type -10 643 425 5 682 1161 203 49 60 chr12 12824478 12824745 -108432785 + B4A SINE B4 2 265 -27 5 682 596 291 135 39 chr12 12825090 12825319 -108432211 - B4A SINE B4 -41 251 1 5 682 1706 212 27 27 chr12 12825469 12825837 -108431693 - ORR1D2 LTR MaLR 0 370 3 5 682 536 335 21 11 chr12 12825874 12826061 -108431469 - MIR SINE MIR -71 191 3 5 682 1991 182 8 24 chr12 12826443 12826814 -108430716 - ORR1B2 LTR MaLR 0 367 3 6 682 208 200 18 35 chr12 12826860 12826917 -108430613 + GA-rich Low_complexity Low_complexity 2 57 0 6 682 1107 192 32 18 chr12 12827018 12827236 -108430294 + ORR1C2 LTR MaLR 157 377 -7 6 682 459 294 0 0 chr12 12827241 12827350 -108430180 + B4A SINE B4 180 288 -4 6 682 275 330 0 0 chr12 12827742 12827848 -108429682 + (GCCTAA)n Simple_repeat Simple_repeat 2 107 0 6 682 390 21 0 0 chr12 12829355 12829402 -108428128 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 682 441 0 0 0 chr12 12829402 12829450 -108428080 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 682 601 238 23 8 chr12 12830421 12830552 -108426978 + B1_Mus2 SINE Alu 1 133 -14 6 682 248 111 22 0 chr12 12830572 12830617 -108426913 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 6 682 686 323 49 26 chr12 12830667 12831017 -108426513 + Lx8 LINE L1 5629 5986 -1487 6 682 23 0 0 0 chr12 12831718 12831741 -108425789 + GC_rich Low_complexity Low_complexity 1 23 0 6 682 1227 55 0 0 chr12 12831960 12832106 -108425424 + B1_Mm SINE Alu 2 147 0 6 682 270 0 0 0 chr12 12832106 12832136 -108425394 + (A)n Simple_repeat Simple_repeat 1 30 0 6 682 224 113 31 46 chr12 12832247 12832297 -108425233 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 6 682 1163 88 0 0 chr12 12832297 12832444 -108425086 - B1_Mus1 SINE Alu 0 148 2 6 682 224 113 31 46 chr12 12832444 12832458 -108425072 + (TTTG)n Simple_repeat Simple_repeat 2 14 0 6 682 236 243 51 51 chr12 12832560 12832638 -108424892 + ID4 SINE ID 2 79 -4 6 682 673 289 55 84 chr12 12832649 12832993 -108424537 + MLT1G1 LTR MaLR 93 426 -153 6 682 668 192 43 31 chr12 12833010 12833171 -108424359 - B3 SINE B2 0 216 54 6 682 1442 163 95 73 chr12 12833298 12833557 -108423973 - ORR1C1 LTR MaLR 0 378 90 6 682 1531 164 118 21 chr12 12833557 12833931 -108423599 - RMER17C LTR ERVK 0 410 1 6 682 1442 163 95 73 chr12 12833931 12834041 -108423489 - ORR1C1 LTR MaLR -289 89 1 6 682 228 135 0 0 chr12 12835597 12835634 -108421896 + (TATG)n Simple_repeat Simple_repeat 3 39 0 6 682 656 295 53 34 chr12 12835659 12835704 -108421826 - B4A SINE B4 -22 270 226 6 682 180 77 0 0 chr12 12835704 12835730 -108421800 + (TTA)n Simple_repeat Simple_repeat 2 27 0 6 682 656 295 53 34 chr12 12835730 12835947 -108421583 - B4A SINE B4 -67 225 3 6 682 822 137 46 0 chr12 12836123 12836254 -108421276 + B1_Mur4 SINE Alu 3 139 -11 6 682 695 167 12 12 chr12 12836267 12836431 -108421099 + GA-rich Low_complexity Low_complexity 3 166 0 6 682 183 42 0 0 chr12 12836433 12836457 -108421073 + (CAAG)n Simple_repeat Simple_repeat 2 25 0 6 682 198 103 0 0 chr12 12836793 12836822 -108420708 + (CAGA)n Simple_repeat Simple_repeat 1 29 0 6 682 984 133 28 34 chr12 12836960 12837127 -108420403 + B2_Mm2 SINE B2 8 175 -20 6 682 267 31 0 0 chr12 12837127 12837159 -108420371 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 6 682 984 133 28 34 chr12 12837159 12837170 -108420360 + B2_Mm2 SINE B2 176 185 -10 6 682 324 277 157 25 chr12 12837164 12837323 -108420207 + RMER5 LTR ERV1 95 274 -260 6 682 1223 176 8 8 chr12 12837357 12837592 -108419938 + RMER6D LTR ERVK 1 235 -485 6 682 305 156 94 0 chr12 12837616 12837680 -108419850 + RMER6D LTR ERVK 621 690 0 6 682 320 318 44 31 chr12 12837686 12837845 -108419685 + RMER5 LTR ERV1 306 466 -68 6 682 243 0 0 0 chr12 12837936 12837963 -108419567 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 682 1135 49 0 20 chr12 12837963 12838102 -108419428 - B1_Mus2 SINE Alu -9 138 2 6 682 476 210 54 46 chr12 12838654 12838784 -108418746 + ID_B1 SINE B4 80 210 -14 6 682 363 312 24 30 chr12 12838797 12838962 -108418568 + RSINE1 SINE B4 2 165 0 6 682 21 57 0 0 chr12 12838975 12839010 -108418520 + AT_rich Low_complexity Low_complexity 1 35 0 6 682 324 270 11 0 chr12 12839213 12839302 -108418228 - B1F2 SINE Alu -8 141 52 6 682 359 250 0 30 chr12 12839378 12839477 -108418053 - MLT1A0 LTR MaLR -10 355 260 6 682 333 254 150 17 chr12 12839541 12839661 -108417869 - MLT1A0 LTR MaLR -230 178 43 6 682 390 57 0 0 chr12 12839850 12839903 -108417627 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 682 837 169 11 11 chr12 12840421 12840601 -108416929 + CT-rich Low_complexity Low_complexity 1 180 0 6 682 428 36 18 0 chr12 12840601 12840656 -108416874 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 682 472 238 136 24 chr12 12840660 12840785 -108416745 - B1_Mus1 SINE Alu -5 143 5 6 682 329 347 6 87 chr12 12840972 12841133 -108416397 - RSINE1 SINE B4 -15 150 3 6 682 235 242 116 42 chr12 12841354 12841449 -108416081 + ID_B1 SINE B4 78 179 -45 6 682 212 298 103 40 chr12 12841371 12841497 -108416033 + B1F1 SINE Alu 13 146 -3 6 682 391 297 33 93 chr12 12841545 12841616 -108415914 + ID SINE ID 5 75 -149 6 682 483 18 0 0 chr12 12841616 12841672 -108415858 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 682 391 297 33 93 chr12 12841672 12841688 -108415842 + ID_B1 SINE B4 76 159 -65 6 682 341 250 65 74 chr12 12841688 12841765 -108415765 + PB1D10 SINE Alu 2 81 -36 6 682 1187 241 135 3 chr12 12841765 12842090 -108415440 - ORR1D2 LTR MaLR -2 368 1 6 682 391 297 33 93 chr12 12842090 12842106 -108415424 + ID_B1 SINE B4 160 175 -49 6 682 341 250 65 74 chr12 12842106 12842120 -108415410 + PB1D10 SINE Alu 82 108 -9 6 682 261 0 0 0 chr12 12842125 12842154 -108415376 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6 682 1907 145 88 18 chr12 12843026 12843369 -108414161 + ORR1B2 LTR MaLR 1 367 0 6 682 21 0 0 0 chr12 12843879 12843900 -108413630 + AT_rich Low_complexity Low_complexity 1 21 0 6 682 227 289 13 0 chr12 12843963 12844039 -108413491 + B1F SINE Alu 68 144 -5 6 682 318 250 14 0 chr12 12844058 12844130 -108413400 + ID4_ SINE ID 10 82 -1 6 682 26 104 0 0 chr12 12844131 12844227 -108413303 + AT_rich Low_complexity Low_complexity 1 96 0 6 682 335 301 41 95 chr12 12844239 12844386 -108413144 + B4 SINE B4 81 219 -73 6 682 734 199 0 8 chr12 12844256 12844388 -108413142 + B1_Mus1 SINE Alu 13 143 -5 6 682 753 174 8 0 chr12 12844388 12844616 -108412914 + GA-rich Low_complexity Low_complexity 1 229 0 6 682 698 224 42 0 chr12 12844859 12845002 -108412528 - B1_Mur1 SINE Alu 0 149 1 6 683 270 0 0 0 chr12 12846344 12846374 -108411156 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 6 683 262 163 0 0 chr12 12846436 12846485 -108411045 + MTE2a LTR MaLR 1 49 -330 6 683 1407 208 90 3 chr12 12846500 12846832 -108410698 - ORR1D1 LTR MaLR -13 361 1 6 683 949 243 57 97 chr12 12846857 12847208 -108410322 + MTE2a LTR MaLR 34 370 -9 6 683 206 347 0 0 chr12 12847530 12847605 -108409925 + C-rich Low_complexity Low_complexity 3 77 0 6 683 399 73 0 0 chr12 12848413 12848468 -108409062 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 683 269 212 73 29 chr12 12849573 12849641 -108407889 - ID4 SINE ID -12 71 1 6 683 667 213 16 0 chr12 12851202 12851329 -108406201 + B1_Mus2 SINE Alu 5 133 -14 6 683 456 19 0 0 chr12 12851344 12851397 -108406133 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 6 683 251 0 0 56 chr12 12851397 12851432 -108406098 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 6 683 1175 44 0 0 chr12 12851527 12851664 -108405866 - B1_Mus1 SINE Alu -9 139 3 6 683 286 244 46 115 chr12 12851761 12851813 -108405717 + MT2B LTR ERVL 114 234 -367 6 683 385 200 13 39 chr12 12851813 12851891 -108405639 + B1_Mur3 SINE Alu 5 80 -70 6 683 591 137 0 0 chr12 12851894 12852018 -108405512 + (TG)n Simple_repeat Simple_repeat 2 125 0 6 683 294 242 185 83 chr12 12852099 12852207 -108405323 - B3A SINE B2 -79 119 1 6 683 257 294 39 0 chr12 12852424 12852526 -108405004 + ORR1E LTR MaLR 240 345 -14 6 683 418 281 138 14 chr12 12852669 12852951 -108404579 - L1ME4a LINE L1 -216 5908 5592 6 683 616 314 19 10 chr12 12852980 12853186 -108404344 + ID_B1 SINE B4 15 222 -2 6 683 398 304 203 5 chr12 12853197 12853385 -108404145 + B4A SINE B4 5 229 -63 6 683 318 195 189 33 chr12 12853381 12853471 -108404059 + RSINE1 SINE B4 22 125 -40 6 683 288 0 0 0 chr12 12853478 12853510 -108404020 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 683 244 274 0 14 chr12 12853522 12853596 -108403934 + B4A SINE B4 218 290 -2 6 683 436 257 9 26 chr12 12855921 12856037 -108401493 + ID_B1 SINE B4 2 115 -109 6 683 798 193 27 33 chr12 12856167 12856317 -108401213 + B1_Mur4 SINE Alu 2 150 0 6 683 958 244 40 0 chr12 12856473 12856674 -108400856 - B3 SINE B2 -7 209 1 6 683 1000 194 40 31 chr12 12856957 12857180 -108400350 - URR1B DNA MER1_type 0 225 1 6 683 549 0 0 0 chr12 12858040 12858101 -108399429 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 683 414 0 0 0 chr12 12858101 12858146 -108399384 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 683 1095 36 0 42 chr12 12858300 12858443 -108399087 + B1_Mus2 SINE Alu 2 138 -9 6 683 333 102 0 0 chr12 12858443 12858502 -108399028 + (CATA)n Simple_repeat Simple_repeat 2 60 0 6 683 764 287 79 26 chr12 12858852 12859041 -108398489 - L1MA4 LINE L1 -382 5918 5731 6 683 1566 254 42 26 chr12 12859041 12859538 -108397992 + RLTR16 LTR ERVK 1 505 0 6 683 764 294 78 27 chr12 12859538 12859728 -108397802 - L1MA4 LINE L1 -561 5730 5524 6 683 243 179 0 0 chr12 12859766 12859833 -108397697 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 6 683 569 207 26 84 chr12 12859834 12859997 -108397533 - B1F SINE Alu -1 149 1 6 683 379 243 1 101 chr12 12860023 12860266 -108397264 - L1M4 LINE L1 -746 5400 5142 6 683 423 0 0 0 chr12 12860445 12860492 -108397038 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 683 534 263 30 0 chr12 12860536 12860669 -108396861 - B1F SINE Alu 0 149 13 6 683 338 331 35 62 chr12 12860542 12860687 -108396843 - B4 SINE B4 -72 220 80 6 683 784 189 7 20 chr12 12860830 12860976 -108396554 - B1_Mus1 SINE Alu -2 146 3 6 683 537 315 34 24 chr12 12861037 12861242 -108396288 + B3 SINE B2 10 216 0 6 683 306 202 71 41 chr12 12861839 12861937 -108395593 - MLT1A1 LTR MaLR 0 408 308 6 683 871 113 0 28 chr12 12862342 12862487 -108395043 + B1_Mur3 SINE Alu 9 149 0 6 683 204 226 0 0 chr12 12862488 12862541 -108394989 + A-rich Low_complexity Low_complexity 1 53 0 7 683 1265 124 27 0 chr12 12862541 12862727 -108394803 + B2_Mm2 SINE B2 2 192 -3 7 683 522 0 0 0 chr12 12862738 12862796 -108394734 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 7 683 306 0 0 0 chr12 12862796 12862829 -108394701 + (GAGAA)n Simple_repeat Simple_repeat 1 34 0 7 683 750 313 0 36 chr12 12862892 12863117 -108394413 - ID_B1 SINE B4 0 224 8 7 683 449 262 0 53 chr12 12863120 12863233 -108394297 - ID_B1 SINE B4 -21 203 97 7 683 396 256 54 62 chr12 12863233 12863246 -108394284 - B1F SINE Alu -21 125 1 7 683 1421 70 38 0 chr12 12863536 12863721 -108393809 + B2_Mm2 SINE B2 1 192 -3 7 683 234 0 0 0 chr12 12863839 12863865 -108393665 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 7 683 399 181 7 2 chr12 12864150 12864238 -108393292 - MIRc SINE MIR -110 166 77 7 683 1224 54 0 0 chr12 12865688 12865835 -108391695 + B1_Mm SINE Alu 1 147 0 7 683 225 0 0 0 chr12 12865835 12865860 -108391670 + (A)n Simple_repeat Simple_repeat 1 25 0 7 683 349 271 8 116 chr12 12865889 12866010 -108391520 - PB1D10 SINE Alu -1 116 9 7 683 4535 12 0 0 chr12 12866234 12866727 -108390803 + MT2_Mm LTR ERVL 1 493 0 7 683 28160 156 32 10 chr12 12866727 12871915 -108385615 + ERVL-B4-int LTR ERVL 1 5336 -378 7 683 375 123 13 40 chr12 12871947 12872023 -108385507 + ORR1A3-int LTR MaLR 567 640 -1323 7 683 321 0 0 0 chr12 12872023 12872061 -108385469 + ERVL-B4-int LTR ERVL 5448 5485 0 7 683 4535 12 0 0 chr12 12872061 12872554 -108384976 + MT2_Mm LTR ERVL 1 493 0 7 683 369 304 235 6 chr12 12872591 12872753 -108384777 - B4A SINE B4 -10 282 84 7 683 372 103 0 0 chr12 12872772 12872830 -108384700 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 7 683 283 227 54 54 chr12 12872867 12872960 -108384570 - RSINE1 SINE B4 -42 123 31 7 683 258 244 178 0 chr12 12872961 12873051 -108384479 - B4A SINE B4 -186 106 1 7 683 23 0 0 0 chr12 12873062 12873085 -108384445 + AT_rich Low_complexity Low_complexity 1 23 0 7 683 361 293 79 46 chr12 12873085 12873297 -108384233 - MIR SINE MIR -37 225 8 7 683 497 335 16 53 chr12 12874217 12874463 -108383067 - B4 SINE B4 -8 284 48 7 683 1551 217 56 11 chr12 12874604 12874982 -108382548 - MTD LTR MaLR 0 419 25 7 683 414 233 0 11 chr12 12875051 12875138 -108382392 - PB1D10 SINE Alu -31 86 1 7 683 388 265 119 12 chr12 12875286 12875454 -108382076 + MIRb SINE MIR 77 262 0 7 683 455 346 32 0 chr12 12875697 12875853 -108381677 - ID_B1 SINE B4 -63 161 1 7 683 474 49 0 0 chr12 12876137 12876198 -108381332 + (CATA)n Simple_repeat Simple_repeat 2 62 0 7 683 342 208 37 49 chr12 12876688 12876769 -108380761 + ID4_ SINE ID 2 81 -2 7 683 22 35 0 0 chr12 12876828 12876857 -108380673 + AT_rich Low_complexity Low_complexity 1 29 0 7 683 622 268 215 17 chr12 12876894 12877127 -108380403 + B4 SINE B4 9 287 -5 7 683 471 145 0 0 chr12 12877377 12877460 -108380070 + (TCC)n Simple_repeat Simple_repeat 2 84 0 7 683 180 152 0 0 chr12 12877570 12877603 -108379927 + (TATG)n Simple_repeat Simple_repeat 4 36 0 7 683 208 245 0 36 chr12 12877607 12877662 -108379868 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 7 683 826 176 253 0 chr12 12877701 12877871 -108379659 - B3 SINE B2 0 216 4 7 683 365 153 0 14 chr12 12878466 12878539 -108378991 + GA-rich Low_complexity Low_complexity 1 72 0 7 683 315 0 0 0 chr12 12878916 12878951 -108378579 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 683 363 44 0 0 chr12 12879069 12879114 -108378416 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 683 315 303 54 81 chr12 12879166 12879351 -108378179 - B4A SINE B4 -45 247 70 7 683 289 264 28 0 chr12 12879475 12879547 -108377983 - ID4 SINE ID -4 79 6 7 683 351 304 87 22 chr12 12880383 12880482 -108377048 + B3 SINE B2 32 139 -77 7 683 1188 56 0 0 chr12 12880482 12880644 -108376886 + RLTR44E LTR ERVK 1 162 -290 7 683 1814 152 43 29 chr12 12880644 12880989 -108376541 + MTC LTR MaLR 64 413 -8 7 683 227 301 128 0 chr12 12881080 12881213 -108376317 - MIR SINE MIR -28 234 85 7 683 237 206 0 31 chr12 12881572 12881637 -108375893 + (TTTG)n Simple_repeat Simple_repeat 4 66 0 7 683 492 210 20 0 chr12 12881638 12881738 -108375792 - ID_B1 SINE B4 -3 221 120 7 683 1243 196 46 95 chr12 12882180 12882569 -108374961 - ORR1C1 LTR MaLR -2 376 7 7 683 441 0 0 0 chr12 12883620 12883669 -108373861 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 7 683 499 213 74 0 chr12 12884102 12884224 -108373306 + B1F SINE Alu 11 141 -8 7 683 206 227 0 0 chr12 12884775 12884819 -108372711 - L2a LINE L2 0 3426 3383 7 683 760 171 20 0 chr12 12885146 12885292 -108372238 + B1_Mur3 SINE Alu 1 149 0 7 683 399 98 38 69 chr12 12885326 12885457 -108372073 + GA-rich Low_complexity Low_complexity 2 128 0 7 683 717 90 0 83 chr12 12885479 12885672 -108371858 + GA-rich Low_complexity Low_complexity 2 178 0 7 683 200 256 0 0 chr12 12885672 12885711 -108371819 + G-rich Low_complexity Low_complexity 6 44 0 7 683 774 234 6 6 chr12 12886393 12886556 -108370974 - RSINE1 SINE B4 0 165 3 7 683 512 279 106 35 chr12 12886763 12886990 -108370540 - MTEa LTR MaLR 0 379 137 7 683 701 166 7 21 chr12 12887066 12887208 -108370322 + URR1B DNA MER1_type 86 225 0 7 683 1170 68 7 0 chr12 12887405 12887551 -108369979 - B1_Mus1 SINE Alu 0 148 2 7 683 348 24 0 0 chr12 12887596 12887637 -108369893 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 683 498 17 0 0 chr12 12887637 12887695 -108369835 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 7 683 871 118 0 22 chr12 12887701 12887839 -108369691 - B1_Mur4 SINE Alu -6 144 10 7 683 1466 89 0 5 chr12 12889225 12889418 -108368112 + B2_Mm2 SINE B2 1 192 -3 7 683 1324 220 172 20 chr12 12889856 12890332 -108367198 - RMER13A LTR ERVK -273 587 1 7 683 261 0 0 0 chr12 12891323 12891352 -108366178 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 683 242 29 0 28 chr12 12892232 12892268 -108365262 + (GTTTG)n Simple_repeat Simple_repeat 2 36 0 7 683 800 142 90 0 chr12 12892286 12892420 -108365110 - B1_Mur4 SINE Alu -4 146 1 7 683 261 250 14 14 chr12 12892432 12892501 -108365029 + MTEb LTR MaLR 307 375 -4 7 683 657 254 126 10 chr12 12892558 12892765 -108364765 + B4 SINE B4 13 243 -49 7 683 222 351 33 52 chr12 12892853 12893066 -108364464 - L3b LINE CR1 -251 231 23 7 683 194 57 0 54 chr12 12893813 12893850 -108363680 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 683 207 80 0 74 chr12 12893857 12893911 -108363619 + T-rich Low_complexity Low_complexity 2 51 0 7 683 3235 61 0 8 chr12 12893975 12894374 -108363156 + MTA_Mm LTR MaLR 1 396 0 7 683 406 316 65 55 chr12 12894402 12894611 -108362919 + ORR1E LTR MaLR 1 192 -178 7 683 1027 47 0 0 chr12 12894681 12894809 -108362721 - B1_Mm SINE Alu 0 147 20 7 683 483 231 51 89 chr12 12894682 12894839 -108362691 - B4 SINE B4 -69 223 73 7 683 1017 118 78 11 chr12 12894932 12895112 -108362418 + B2_Mm2 SINE B2 3 194 -1 7 683 1821 198 52 66 chr12 12896299 12896646 -108360884 - MTC LTR MaLR 0 421 68 7 683 824 182 7 7 chr12 12896646 12896795 -108360735 - B1_Mur4 SINE Alu -1 149 1 7 683 1821 198 52 66 chr12 12896795 12896870 -108360660 - MTC LTR MaLR -354 67 5 7 683 5676 153 57 46 chr12 12896874 12898066 -108359464 - MTC-int LTR MaLR 0 1258 2 7 683 1771 121 198 9 chr12 12898069 12898412 -108359118 - MTC LTR MaLR -8 413 6 7 683 230 233 32 48 chr12 12898397 12898460 -108359070 + B4A SINE B4 78 139 -153 7 683 280 284 57 0 chr12 12898420 12898508 -108359022 + PB1D10 SINE Alu 15 107 -10 7 683 1153 58 0 0 chr12 12898768 12898905 -108358625 + B1_Mm SINE Alu 1 137 -10 7 683 415 45 15 15 chr12 12898905 12898972 -108358558 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 7 683 312 94 0 0 chr12 12899943 12899996 -108357534 + (T)n Simple_repeat Simple_repeat 1 53 0 7 683 428 297 17 31 chr12 12900041 12900194 -108357336 + ID_B1 SINE B4 82 233 -59 7 683 296 284 0 0 chr12 12900196 12900263 -108357267 + ID4_ SINE ID 3 69 -14 7 683 653 149 26 9 chr12 12900286 12900401 -108357129 + PB1D10 SINE Alu 1 117 0 7 683 578 289 108 93 chr12 12900636 12900657 -108356873 + ORR1E LTR MaLR 3 21 -338 7 683 2819 168 112 45 chr12 12900657 12901230 -108356300 + RMER19C LTR ERVK 1 611 0 7 683 578 279 86 79 chr12 12901230 12901563 -108355967 + ORR1E LTR MaLR 22 379 0 7 683 1283 238 45 38 chr12 12901726 12902040 -108355490 - ORR1E LTR MaLR -40 319 4 7 683 965 162 56 0 chr12 12902281 12902460 -108355070 + URR1A DNA MER1_type 38 226 0 7 683 291 355 34 10 chr12 12903189 12903325 -108354205 - MIRb SINE MIR -85 177 37 7 683 696 323 15 20 chr12 12903534 12903754 -108353776 + B4 SINE B4 67 286 -6 7 683 341 0 0 43 chr12 12903755 12903801 -108353729 + (CAGAGA)n Simple_repeat Simple_repeat 2 45 0 7 683 634 288 14 7 chr12 12903801 12903948 -108353582 + RSINE1 SINE B4 18 165 0 7 683 883 108 7 28 chr12 12905004 12905147 -108352383 - B3 SINE B2 -3 213 74 7 683 244 208 0 0 chr12 12905247 12905295 -108352235 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 683 267 79 0 0 chr12 12905590 12905628 -108351902 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 683 216 0 0 0 chr12 12905972 12905996 -108351534 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 683 198 0 0 0 chr12 12906732 12906754 -108350776 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 7 683 351 113 0 0 chr12 12906878 12906940 -108350590 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 683 511 257 26 17 chr12 12906980 12907095 -108350435 - B3A SINE B2 -82 116 1 7 683 444 302 8 25 chr12 12907330 12907452 -108350078 + PB1D7 SINE Alu 1 120 0 7 683 25 31 0 0 chr12 12907916 12907948 -108349582 + AT_rich Low_complexity Low_complexity 1 32 0 7 683 976 47 148 0 chr12 12908096 12908224 -108349306 + B1_Mm SINE Alu 1 147 0 8 683 670 304 85 0 chr12 12908256 12908457 -108349073 + ID_B1 SINE B4 4 221 -3 8 683 736 198 32 44 chr12 12908532 12908713 -108348817 + B3 SINE B2 2 189 -6 8 683 433 127 75 12 chr12 12909033 12909113 -108348417 - PB1D10 SINE Alu -9 108 24 8 683 1891 123 101 24 chr12 12909209 12909577 -108347953 - ORR1B1 LTR MaLR 0 394 9 8 683 346 256 38 36 chr12 12909716 12909885 -108347645 + MIRc SINE MIR 82 252 -24 8 683 183 80 0 0 chr12 12910144 12910169 -108347361 + (T)n Simple_repeat Simple_repeat 1 25 0 8 683 1103 54 0 52 chr12 12910169 12910324 -108347206 - B1_Mus1 SINE Alu 0 148 2 8 683 210 176 0 0 chr12 12910678 12910729 -108346801 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 683 219 247 22 56 chr12 12910889 12910979 -108346551 + GA-rich Low_complexity Low_complexity 1 87 0 8 683 186 208 0 0 chr12 12911569 12911617 -108345913 + (CGGG)n Simple_repeat Simple_repeat 2 49 0 8 683 213 349 0 23 chr12 12911749 12911837 -108345693 + (CACG)n Simple_repeat Simple_repeat 1 86 0 8 683 328 257 64 23 chr12 12912443 12912561 -108344969 + PB1D7 SINE Alu 29 149 0 8 683 245 154 0 37 chr12 12912623 12912677 -108344853 + GA-rich Low_complexity Low_complexity 1 52 0 8 683 296 216 27 81 chr12 12913690 12913801 -108343729 - AmnSINE1 SINE SINE -470 105 1 8 683 640 197 0 93 chr12 12914047 12914187 -108343343 - B1_Mur4 SINE Alu -18 132 6 8 683 411 73 0 0 chr12 12914219 12914274 -108343256 + (TGGG)n Simple_repeat Simple_repeat 3 57 0 8 683 1316 87 43 0 chr12 12914402 12914587 -108342943 + B2_Mm2 SINE B2 2 194 -1 8 683 363 44 0 0 chr12 12915280 12915325 -108342205 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 683 515 317 90 24 chr12 12915401 12915656 -108341874 + B4A SINE B4 4 275 -17 8 683 496 243 60 46 chr12 12915884 12916035 -108341495 + RLTR14 LTR ERV1 224 376 -6 8 683 498 83 0 0 chr12 12916039 12916111 -108341419 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 683 180 0 0 0 chr12 12916684 12916704 -108340826 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 8 683 290 328 82 0 chr12 12916759 12916885 -108340645 + ID_B1 SINE B4 15 151 -73 8 683 426 320 116 8 chr12 12916885 12917014 -108340516 + RSINE1 SINE B4 3 145 -20 8 683 390 21 0 0 chr12 12917059 12917106 -108340424 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 683 372 143 14 41 chr12 12917119 12917192 -108340338 + ID_B1 SINE B4 153 223 -1 8 683 203 286 106 74 chr12 12917245 12917434 -108340096 + MIR3 SINE MIR 9 203 -5 8 683 234 301 110 142 chr12 12918215 12918248 -108339282 + B4 SINE B4 66 215 -77 8 683 274 281 67 50 chr12 12918232 12918352 -108339178 + MT2B LTR ERVL 155 276 -325 8 683 577 240 74 8 chr12 12918248 12918370 -108339160 + B1F1 SINE Alu 9 138 -11 8 683 464 313 165 25 chr12 12918374 12918574 -108338956 + B4A SINE B4 2 229 -63 8 683 483 33 0 0 chr12 12918594 12918655 -108338875 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 683 270 154 0 0 chr12 12919849 12919901 -108337629 - L1MB4 LINE L1 -2 6178 6127 8 683 698 270 14 84 chr12 12919908 12920122 -108337408 - B3 SINE B2 -8 208 10 8 683 1574 75 9 26 chr12 12920122 12920354 -108337176 - L1_Mus3 LINE L1 -1 6637 6410 8 683 542 191 53 0 chr12 12920385 12920479 -108337051 - B1_Mur1 SINE Alu -9 140 42 8 683 223 11 0 155 chr12 12920482 12920585 -108336945 + (CCCTG)n Simple_repeat Simple_repeat 4 90 0 8 683 688 285 26 102 chr12 12921192 12921505 -108336025 + B4A SINE B4 4 292 0 8 683 2743 158 44 17 chr12 12921998 12922359 -108335171 + RLTR28 LTR ERVL 26 380 -144 8 683 497 44 15 0 chr12 12922359 12922427 -108335103 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 8 683 2743 158 44 17 chr12 12922427 12922547 -108334983 + RLTR28 LTR ERVL 381 519 -5 8 683 676 282 26 28 chr12 12922739 12922949 -108334581 - B3A SINE B2 0 216 4 8 683 866 265 2 26 chr12 12922949 12923160 -108334370 + B4 SINE B4 83 292 0 8 683 227 320 12 25 chr12 12924257 12924337 -108333193 - MER2B DNA MER2_type -24 312 234 8 683 252 167 0 0 chr12 12924488 12924536 -108332994 + A-rich Low_complexity Low_complexity 1 48 0 8 683 783 181 14 0 chr12 12924543 12924681 -108332849 + B1_Mur3 SINE Alu 9 148 -1 8 683 1056 122 78 0 chr12 12924709 12924889 -108332641 + B2_Mm2 SINE B2 1 194 -1 8 683 233 317 0 0 chr12 12924896 12924956 -108332574 - MER2B DNA MER2_type -102 234 175 8 683 380 302 0 0 chr12 12925685 12925801 -108331729 + PB1D10 SINE Alu 2 117 0 8 683 336 222 0 0 chr12 12925812 12925875 -108331655 + ID_B1 SINE B4 91 153 -71 8 683 519 224 23 31 chr12 12925884 12926013 -108331517 + ID_B1 SINE B4 97 224 0 8 683 207 0 0 0 chr12 12926030 12926053 -108331477 + (T)n Simple_repeat Simple_repeat 1 23 0 8 683 464 264 226 24 chr12 12926145 12926438 -108331092 + Arthur1 DNA Tip100 3353 3707 -240 8 683 428 248 17 17 chr12 12926438 12926557 -108330973 + PB1D9 SINE Alu 1 119 -1 8 683 333 47 0 0 chr12 12926736 12926779 -108330751 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 683 861 272 71 24 chr12 12926941 12927193 -108330337 + B4 SINE B4 29 292 0 8 683 301 273 0 0 chr12 12927494 12927560 -108329970 + B3A SINE B2 2 67 -131 8 683 280 333 0 9 chr12 12928179 12928285 -108329245 + G-rich Low_complexity Low_complexity 1 105 0 8 683 1101 129 166 0 chr12 12928332 12928525 -108329005 - URR1B DNA MER1_type 0 225 1 8 683 603 262 165 61 chr12 12928549 12928895 -108328635 + MTE2a LTR MaLR 18 399 -20 8 683 319 229 92 92 chr12 12928978 12929098 -108328432 - PB1D7 SINE Alu 0 120 1 8 683 908 261 60 101 chr12 12929434 12929533 -108327997 + MLT1C LTR MaLR 86 175 -292 8 683 821 73 195 0 chr12 12929533 12929656 -108327874 + B1_Mm SINE Alu 1 147 0 8 683 908 261 60 101 chr12 12929656 12929953 -108327577 + MLT1C LTR MaLR 176 466 -1 8 683 322 319 80 0 chr12 12930233 12930346 -108327184 - RSINE1 SINE B4 0 165 44 8 683 210 71 0 0 chr12 12930376 12930404 -108327126 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 683 1075 115 97 0 chr12 12930492 12930657 -108326873 + B2_Mm2 SINE B2 1 181 -14 8 683 189 0 0 0 chr12 12930657 12930678 -108326852 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 683 451 293 56 159 chr12 12930712 12931033 -108326497 - B4 SINE B4 -1 291 4 8 683 774 151 57 7 chr12 12931099 12931239 -108326291 + B1_Mur4 SINE Alu 2 148 -2 8 683 290 104 30 40 chr12 12931239 12931339 -108326191 + (CAA)n Simple_repeat Simple_repeat 1 99 0 8 683 1516 161 118 3 chr12 12932933 12933277 -108324253 + MTC LTR MaLR 8 421 0 8 683 1458 40 34 0 chr12 12933536 12933712 -108323818 + B2_Mm2 SINE B2 2 183 -12 8 683 722 47 274 0 chr12 12933712 12933817 -108323713 + B1_Mus1 SINE Alu 1 135 -13 8 683 360 0 0 0 chr12 12933818 12933858 -108323672 + (CAA)n Simple_repeat Simple_repeat 3 42 0 8 683 297 298 86 9 chr12 12934712 12934817 -108322713 + PB1D9 SINE Alu 2 114 -6 8 683 684 207 44 7 chr12 12934862 12934998 -108322532 + B1F SINE Alu 9 149 0 8 683 231 125 0 0 chr12 12934998 12935038 -108322492 + (A)n Simple_repeat Simple_repeat 1 40 0 8 683 297 0 0 0 chr12 12935530 12935563 -108321967 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 8 683 270 0 0 0 chr12 12935563 12935595 -108321935 - B1_Mus2 SINE Alu -10 137 106 8 683 911 221 5 32 chr12 12935606 12935793 -108321737 - B3A SINE B2 -5 193 12 8 683 370 23 0 0 chr12 12936289 12936333 -108321197 + B1_Mus2 SINE Alu 97 140 -7 8 683 786 166 6 11 chr12 12936344 12936521 -108321009 + GA-rich Low_complexity Low_complexity 2 177 0 8 683 432 86 0 0 chr12 12936522 12936592 -108320938 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 8 683 384 215 127 30 chr12 12936638 12936772 -108320758 - B1F2 SINE Alu 0 149 3 8 683 283 266 0 12 chr12 12937443 12937523 -108320007 - ID4_ SINE ID -4 79 1 8 683 400 204 95 67 chr12 12937683 12937788 -108319742 - ID_B1 SINE B4 -2 222 115 8 683 555 172 216 0 chr12 12937871 12937987 -108319543 - B1_Mur2 SINE Alu -7 142 2 8 683 355 271 37 8 chr12 12938263 12938397 -108319133 + B1F SINE Alu 4 141 -8 8 683 294 282 0 27 chr12 12938412 12938485 -108319045 + ID4 SINE ID 2 72 -11 8 683 306 0 0 0 chr12 12938509 12938543 -108318987 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 683 403 266 8 58 chr12 12938679 12938799 -108318731 + RSINE1 SINE B4 35 148 -17 8 683 772 249 50 22 chr12 12938866 12939047 -108318483 + B3A SINE B2 12 197 -1 8 683 243 0 0 0 chr12 12939192 12939219 -108318311 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 683 1191 168 5 0 chr12 12939707 12939898 -108317632 + URR1A DNA MER1_type 1 192 -34 8 683 709 260 45 40 chr12 12940440 12940640 -108316890 + ID_B1 SINE B4 8 208 -16 8 683 538 264 89 14 chr12 12940970 12941147 -108316383 - B3A SINE B2 -2 214 27 8 683 190 200 0 0 chr12 12944680 12944715 -108312815 + MIRc SINE MIR 122 156 -112 8 683 383 239 0 9 chr12 12948853 12948963 -108308567 + CT-rich Low_complexity Low_complexity 1 109 0 8 683 593 243 43 14 chr12 12950570 12950708 -108306822 - ID_B1 SINE B4 -2 222 81 8 683 182 318 48 0 chr12 12950916 12950979 -108306551 + MIRm SINE MIR 76 141 -135 8 683 1041 89 0 0 chr12 12951422 12951568 -108305962 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 8 683 223 284 123 49 chr12 12951700 12951822 -108305708 + ID_B1 SINE B4 55 185 -39 9 683 348 212 106 0 chr12 12951749 12951834 -108305696 + PB1D10 SINE Alu 23 116 -1 9 683 520 309 52 13 chr12 12951881 12952035 -108305495 + RSINE1 SINE B4 5 164 -1 9 683 301 364 44 25 chr12 12952703 12952906 -108304624 + L1MC LINE L1 5257 5463 -2419 9 683 556 276 0 8 chr12 12953030 12953154 -108304376 + RSINE1 SINE B4 3 125 -40 9 683 265 350 0 20 chr12 12953220 12953310 -108304220 + PB1D10 SINE Alu 17 104 -13 9 683 252 0 0 0 chr12 12953310 12953338 -108304192 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9 683 310 326 11 53 chr12 12953391 12953485 -108304045 + B1_Mur4 SINE Alu 11 100 -50 9 683 552 164 0 0 chr12 12953514 12953624 -108303906 + GA-rich Low_complexity Low_complexity 1 110 0 9 683 260 269 0 0 chr12 12953814 12953866 -108303664 + PB1 SINE Alu 73 124 -3 9 683 486 0 0 0 chr12 12953900 12953954 -108303576 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 683 670 269 7 7 chr12 12953954 12954104 -108303426 + RSINE1 SINE B4 5 154 -11 9 683 467 345 36 7 chr12 12954127 12954267 -108303263 + MER47B DNA MER2_type 110 253 -165 9 683 551 92 0 11 chr12 12954309 12954397 -108303133 + (TA)n Simple_repeat Simple_repeat 2 88 0 9 683 232 320 50 62 chr12 12954397 12954477 -108303053 - ID4_ SINE ID -2 81 3 9 683 637 193 8 8 chr12 12954582 12954702 -108302828 + B3 SINE B2 2 121 -95 9 683 551 296 72 7 chr12 12954847 12955000 -108302530 + RSINE1 SINE B4 2 164 -1 9 683 1184 218 36 98 chr12 12955105 12955461 -108302069 + MTE2a LTR MaLR 1 334 -45 9 683 524 0 53 0 chr12 12955517 12955593 -108301937 + (TC)n Simple_repeat Simple_repeat 2 81 0 9 683 1189 50 0 0 chr12 12955594 12955734 -108301796 - B1_Mus2 SINE Alu -6 141 2 9 683 1230 72 72 6 chr12 12956457 12956638 -108300892 - B2_Mm2 SINE B2 -2 193 1 9 683 183 299 43 29 chr12 12957223 12957292 -108300238 - L3 LINE CR1 -4295 194 125 9 683 255 294 33 66 chr12 12957457 12957548 -108299982 + LTR48B LTR ERV1 442 529 -115 9 683 1326 77 22 0 chr12 12958934 12959116 -108298414 - B2_Mm2 SINE B2 -1 194 9 9 683 211 382 22 22 chr12 12959247 12959314 -108298216 + MIRm SINE MIR 23 87 -189 9 683 1206 62 7 0 chr12 12959314 12959460 -108298070 - B1_Mus1 SINE Alu -1 147 1 9 683 211 322 23 62 chr12 12959460 12959538 -108297992 + MIRm SINE MIR 88 160 -108 9 683 414 0 0 0 chr12 12959538 12959584 -108297946 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 683 194 308 24 71 chr12 12959584 12959604 -108297926 + MIRc SINE MIR 161 181 -87 9 683 240 258 114 76 chr12 12959633 12959738 -108297792 - MLT1A1 LTR MaLR -7 401 293 9 683 333 68 0 0 chr12 12959954 12959998 -108297532 + (TCC)n Simple_repeat Simple_repeat 2 45 0 9 683 837 190 0 0 chr12 12959999 12960141 -108297389 - B1_Mus1 SINE Alu -5 143 2 9 683 226 273 33 22 chr12 12960433 12960523 -108297007 + MTEb LTR MaLR 282 372 -7 9 683 1408 262 64 17 chr12 12960675 12960774 -108296756 - ORR1D2 LTR MaLR -2 368 274 9 683 2337 100 25 0 chr12 12960774 12961093 -108296437 + ORR1A2 LTR MaLR 1 327 0 9 683 1408 262 64 17 chr12 12961093 12961339 -108296191 - ORR1D2 LTR MaLR -97 273 7 9 683 435 360 45 25 chr12 12961350 12961595 -108295935 + MTE-int LTR MaLR 185 434 -1146 9 683 1537 206 48 72 chr12 12961743 12962119 -108295411 + ORR1D1 LTR MaLR 8 374 0 9 683 1167 82 0 0 chr12 12962126 12962273 -108295257 + B1_Mus1 SINE Alu 2 148 0 9 683 201 74 0 0 chr12 12962273 12962300 -108295230 + (A)n Simple_repeat Simple_repeat 1 27 0 9 683 470 379 96 42 chr12 12962397 12962730 -108294800 + MTE-int LTR MaLR 741 1091 -489 9 683 1052 268 98 21 chr12 12962763 12963091 -108294439 + MTEa LTR MaLR 26 378 -1 9 683 2131 298 51 29 chr12 12963085 12963415 -108294115 + MTEa-int LTR MaLR 1 333 -1247 9 683 420 37 0 0 chr12 12963415 12963469 -108294061 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 683 2131 298 51 29 chr12 12963469 12963787 -108293743 + MTEa-int LTR MaLR 334 662 -918 9 683 777 165 139 0 chr12 12963771 12963929 -108293601 - B2_Mm2 SINE B2 -14 181 2 9 683 1531 296 36 23 chr12 12963929 12964124 -108293406 + MTEa-int LTR MaLR 646 841 -739 9 683 3243 43 10 0 chr12 12964124 12964516 -108293014 + MTA_Mm LTR MaLR 1 396 0 9 683 1531 296 36 23 chr12 12964516 12964737 -108292793 + MTEa-int LTR MaLR 842 1068 -512 9 683 421 303 135 21 chr12 12965098 12965290 -108292240 - ID_B1 SINE B4 -7 217 4 9 683 689 268 6 18 chr12 12965427 12965594 -108291936 - RSINE1 SINE B4 0 165 1 9 683 182 328 211 23 chr12 12965698 12965826 -108291704 - MIR SINE MIR -70 192 41 9 683 369 244 53 75 chr12 12965879 12966012 -108291518 - B1F SINE Alu 0 149 20 9 683 1839 134 63 60 chr12 12965985 12966302 -108291228 - ORR1A3 LTR MaLR -8 318 1 9 683 688 309 20 5 chr12 12966317 12966512 -108291018 + Lx5 LINE L1 6853 7050 0 9 683 1118 245 142 46 chr12 12966648 12966994 -108290536 - MTEa LTR MaLR 0 379 1 9 683 216 0 0 0 chr12 12967348 12967372 -108290158 + (TTAG)n Simple_repeat Simple_repeat 3 26 0 9 683 1035 204 156 0 chr12 12968189 12968439 -108289091 - MTD LTR MaLR -55 364 76 9 683 205 224 45 0 chr12 12968510 12968577 -108288953 + CT-rich Low_complexity Low_complexity 1 70 0 9 683 266 382 0 0 chr12 12968697 12968799 -108288731 - Tigger5 DNA MER2_type 0 2406 2305 9 683 530 15 15 0 chr12 12969062 12969127 -108288403 + B1_Mm SINE Alu 81 146 -1 9 683 243 0 0 0 chr12 12969148 12969175 -108288355 + (CCA)n Simple_repeat Simple_repeat 3 29 0 9 683 363 296 0 155 chr12 12969595 12969679 -108287851 - B1F SINE Alu -2 147 67 9 683 210 37 0 0 chr12 12969679 12969706 -108287824 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 683 1092 71 0 14 chr12 12969709 12969851 -108287679 - B1_Mm SINE Alu -6 141 2 9 683 363 296 0 155 chr12 12969851 12969910 -108287620 - B1F SINE Alu -83 66 23 9 683 3158 61 0 27 chr12 12970147 12970554 -108286976 + MTA_Mm LTR MaLR 1 396 0 9 683 1575 254 51 55 chr12 12970698 12971247 -108286283 + Lx8 LINE L1 6888 7434 -39 9 683 305 259 0 73 chr12 12971243 12971393 -108286137 + Lx8 LINE L1 7335 7473 0 9 683 227 315 55 9 chr12 12971568 12971677 -108285853 - MLT1B LTR MaLR -200 190 77 9 683 959 103 13 40 chr12 12971733 12971885 -108285645 - B1_Mur4 SINE Alu -2 148 1 9 683 479 294 104 7 chr12 12971909 12972053 -108285477 - RSINE1 SINE B4 -2 163 6 9 683 324 258 19 85 chr12 12972247 12972353 -108285177 - ID_B1 SINE B4 0 224 126 9 683 1188 286 29 75 chr12 12972582 12972644 -108284886 - ORR1D2 LTR MaLR -2 368 309 9 683 800 184 200 6 chr12 12972644 12972824 -108284706 + B3 SINE B2 1 215 -1 9 683 1188 286 29 75 chr12 12972824 12973147 -108284383 - ORR1D2 LTR MaLR -62 308 1 9 683 308 336 43 0 chr12 12973485 12973601 -108283929 + MER94 DNA AcHobo 7 127 -7 9 683 268 303 0 0 chr12 12973775 12973851 -108283679 + L2a LINE L2 3338 3413 -13 9 683 573 271 116 95 chr12 12973979 12974220 -108283310 + MLT1C LTR MaLR 4 249 -141 9 683 189 107 0 0 chr12 12975859 12975887 -108281643 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 9 683 630 122 122 0 chr12 12975887 12975994 -108281536 - PB1D9 SINE Alu 0 120 1 9 85 1160 207 9 0 chr12 12976004 12976221 -108281309 + URR1B DNA MER1_type 7 225 0 9 684 813 182 15 0 chr12 12977059 12977191 -108280339 - B3A SINE B2 -62 136 3 9 684 188 284 142 52 chr12 12977512 12977646 -108279884 - MIRb SINE MIR -117 151 6 9 684 596 182 0 175 chr12 12977933 12978042 -108279488 - ID_B1 SINE B4 0 224 131 9 684 477 0 0 0 chr12 12978042 12978095 -108279435 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 684 612 0 0 0 chr12 12978099 12978167 -108279363 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 9 684 1069 74 0 0 chr12 12978169 12978304 -108279226 - B1_Mus1 SINE Alu -13 135 1 9 684 596 182 0 175 chr12 12978304 12978352 -108279178 - ID_B1 SINE B4 -94 130 88 9 684 335 244 12 12 chr12 12978355 12978438 -108279092 - ID4_ SINE ID 0 83 1 9 684 495 198 19 50 chr12 12978488 12978734 -108278796 + CT-rich Low_complexity Low_complexity 1 238 0 9 684 254 228 24 37 chr12 12978737 12978795 -108278735 + polypyrimidine Low_complexity Low_complexity 26 85 0 9 684 1437 39 0 0 chr12 12978795 12978975 -108278555 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 9 684 254 228 24 37 chr12 12978975 12978998 -108278532 + polypyrimidine Low_complexity Low_complexity 5 25 0 9 684 286 364 27 115 chr12 12980078 12980373 -108277157 + LTR16A LTR ERVL 5 273 -178 9 684 1092 267 94 40 chr12 12980387 12980738 -108276792 + MTEb LTR MaLR 10 379 0 9 684 266 262 58 35 chr12 12981862 12981949 -108275581 - B3 SINE B2 -2 214 126 9 684 403 262 27 33 chr12 12982076 12982204 -108275326 - PB1 SINE Alu 0 127 1 9 684 414 0 0 0 chr12 12982246 12982292 -108275238 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 684 1365 96 32 0 chr12 12982667 12982854 -108274676 - B2_Mm1t SINE B2 0 193 1 9 684 1445 68 5 20 chr12 12983129 12983325 -108274205 - B2_Mm1t SINE B2 0 193 1 9 684 180 196 130 0 chr12 12983376 12983422 -108274108 + MIRm SINE MIR 37 88 -188 9 684 252 265 70 38 chr12 12983476 12983633 -108273897 - HAL1 LINE L1 -337 2170 2009 9 684 1296 144 0 105 chr12 12983670 12983918 -108273612 + URR1A DNA MER1_type 5 226 0 9 684 180 125 0 0 chr12 12984213 12984245 -108273285 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 684 811 247 0 30 chr12 12984246 12984413 -108273117 - B4 SINE B4 -22 270 109 9 684 937 251 164 7 chr12 12984423 12984716 -108272814 + ORR1D2 LTR MaLR 1 339 -31 9 684 468 0 0 0 chr12 12984717 12984769 -108272761 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 9 684 562 307 20 7 chr12 12984858 12985009 -108272521 - RSINE1 SINE B4 0 165 13 9 684 611 279 105 80 chr12 12985114 12985649 -108271881 - L1ME1 LINE L1 -2 6350 5803 9 684 729 188 0 0 chr12 12985674 12985828 -108271702 + CT-rich Low_complexity Low_complexity 3 156 0 9 684 334 318 116 0 chr12 12985866 12985995 -108271535 - ID_B1 SINE B4 0 224 81 1 684 204 40 0 0 chr12 12986000 12986025 -108271505 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 684 295 282 45 34 chr12 12986041 12986129 -108271401 - RSINE1 SINE B4 -4 161 73 1 684 1226 106 26 21 chr12 12986245 12986269 -108271261 - B2_Mm2 SINE B2 0 195 170 1 684 1229 55 0 0 chr12 12986269 12986414 -108271116 + B1_Mus2 SINE Alu 1 145 -2 1 684 261 0 0 0 chr12 12986414 12986443 -108271087 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1 684 1226 106 26 21 chr12 12986443 12986610 -108270920 - B2_Mm2 SINE B2 -26 169 3 1 684 638 324 43 19 chr12 12986614 12987046 -108270484 - L1ME1 LINE L1 -1381 4932 4488 9 684 386 175 0 12 chr12 12987191 12987272 -108270258 + CT-rich Low_complexity Low_complexity 2 81 0 1 684 212 277 0 0 chr12 12987275 12987322 -108270208 + T-rich Low_complexity Low_complexity 5 51 0 1 684 23 33 0 0 chr12 12987365 12987395 -108270135 + AT_rich Low_complexity Low_complexity 1 30 0 1 684 1018 267 43 13 chr12 12987399 12987758 -108269772 - L1M3 LINE L1 -626 5818 5450 1 684 692 291 180 39 chr12 12987835 12988334 -108269196 - MLT1F1 LTR MaLR 0 569 3 1 684 238 129 0 31 chr12 12988442 12988506 -108269024 + T-rich Low_complexity Low_complexity 1 62 0 1 684 213 247 191 53 chr12 12988627 12988721 -108268809 - PB1D9 SINE Alu -1 119 13 1 684 485 282 88 44 chr12 12988729 12988955 -108268575 - L1ME1 LINE L1 -4278 2122 1887 9 684 464 298 14 14 chr12 12988974 12989117 -108268413 + B1F SINE Alu 6 148 -1 1 684 273 312 99 6 chr12 12989138 12989309 -108268221 - L1ME1 LINE L1 -4525 1875 1689 9 684 660 26 0 0 chr12 12989357 12989435 -108268095 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 684 414 300 39 55 chr12 12989451 12989578 -108267952 - RSINE1 SINE B4 -38 127 3 1 684 262 283 111 45 chr12 12989649 12989893 -108267637 - L1ME1 LINE L1 -4819 1581 1322 9 684 329 224 13 13 chr12 12989939 12990016 -108267514 - MLT1F1 LTR MaLR -423 146 70 1 684 260 259 86 86 chr12 12990129 12990222 -108267308 - PB1 SINE Alu 0 127 35 1 684 398 245 10 41 chr12 12990218 12990316 -108267214 + PB1D7 SINE Alu 9 103 -17 1 684 679 137 8 8 chr12 12990319 12990444 -108267086 + GA-rich Low_complexity Low_complexity 4 128 0 1 684 263 32 0 0 chr12 12990444 12990475 -108267055 + (GGAAA)n Simple_repeat Simple_repeat 5 35 0 1 684 862 111 11 44 chr12 12990475 12990655 -108266875 + GA-rich Low_complexity Low_complexity 4 177 0 1 684 245 322 15 30 chr12 12990991 12991117 -108266413 + MLT1A1 LTR MaLR 236 408 0 1 684 551 277 114 107 chr12 12991117 12991667 -108265863 - L1ME1 LINE L1 -5269 1131 578 9 684 457 263 9 9 chr12 12992234 12992349 -108265181 - PB1D10 SINE Alu -2 115 1 1 684 426 275 50 63 chr12 12992374 12992533 -108264997 + RSINE1 SINE B4 3 159 -6 1 684 272 97 48 16 chr12 12992733 12992796 -108264734 + (TTG)n Simple_repeat Simple_repeat 2 66 0 1 684 505 250 41 20 chr12 12993625 12993772 -108263758 - HAL1 LINE L1 -2308 199 50 1 684 291 242 252 0 chr12 12995042 12995141 -108262389 - RSINE1 SINE B4 -36 129 6 1 684 369 259 12 12 chr12 12995132 12995218 -108262312 - RSINE1 SINE B4 -77 88 3 1 684 264 122 0 0 chr12 12995278 12995319 -108262211 + (GGA)n Simple_repeat Simple_repeat 2 42 0 1 684 195 69 0 0 chr12 12995326 12995355 -108262175 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 1 684 884 51 68 0 chr12 12995355 12995472 -108262058 - B1_Mm SINE Alu 0 147 23 1 684 526 250 0 0 chr12 12996105 12996217 -108261313 + PB1D7 SINE Alu 1 112 -8 1 684 348 209 0 0 chr12 12996243 12996329 -108261201 + GA-rich Low_complexity Low_complexity 2 87 0 1 684 404 311 14 22 chr12 12996845 12996983 -108260547 + G-rich Low_complexity Low_complexity 2 138 0 1 684 254 224 78 13 chr12 12997180 12997257 -108260273 - L1MB1 LINE L1 -64 6119 6038 1 684 536 297 29 123 chr12 12997546 12997621 -108259909 - L1MB1 LINE L1 -162 6009 5937 1 684 561 30 0 0 chr12 12997621 12997688 -108259842 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 684 664 272 23 121 chr12 12997688 12998058 -108259472 - L1MB1 LINE L1 -235 5936 5606 1 684 422 261 7 29 chr12 12998154 12998292 -108259238 - L1M2 LINE L1 -693 5610 5476 1 684 217 200 0 24 chr12 12998312 12998353 -108259177 - PB1D7 SINE Alu -77 43 4 1 684 294 267 102 61 chr12 12998353 12998668 -108258862 - L1_Mur3 LINE L1 -677 5479 5107 1 684 1028 253 70 79 chr12 12998688 12999117 -108258413 - L1M2 LINE L1 -1099 5044 4620 1 684 1036 296 48 65 chr12 12999090 12999552 -108257978 - L1MB4 LINE L1 -112 6068 5615 1 684 279 277 109 68 chr12 13000138 13000285 -108257245 + MIRm SINE MIR 2 154 -122 1 684 182 350 26 0 chr12 13000850 13000967 -108256563 - MIRc SINE MIR -84 184 65 2 684 234 0 0 0 chr12 13001099 13001125 -108256405 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 684 207 0 0 0 chr12 13001968 13001991 -108255539 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 684 240 279 14 14 chr12 13002635 13002704 -108254826 - B3A SINE B2 -98 100 32 5 684 258 32 0 0 chr12 13002713 13002744 -108254786 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 6 684 242 348 21 11 chr12 13003470 13003563 -108253967 + B1F1 SINE Alu 25 118 -31 7 684 432 0 0 0 chr12 13003604 13003652 -108253878 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 684 387 273 28 62 chr12 13003793 13003823 -108253707 + CYRA11_Mm Unknown Y-chromosome 144 167 -450 9 684 875 159 185 0 chr12 13003823 13004012 -108253518 - URR1B DNA MER1_type 0 225 2 1 684 330 133 46 77 chr12 13004014 13004079 -108253451 + PB1D10 SINE Alu 47 109 -11 1 684 275 389 39 21 chr12 13004079 13004360 -108253170 + B4A SINE B4 3 288 -4 1 684 324 0 0 0 chr12 13004575 13004611 -108252919 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 684 336 48 0 0 chr12 13004611 13004652 -108252878 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 684 314 194 365 42 chr12 13004670 13004837 -108252693 + Lx8 LINE L1 7253 7473 0 1 684 884 238 24 10 chr12 13004851 13005059 -108252471 - B3 SINE B2 -1 215 5 1 684 1085 55 7 40 chr12 13005083 13005233 -108252297 + B1_Mus1 SINE Alu 4 148 0 1 684 279 113 0 0 chr12 13005235 13005288 -108252242 + (A)n Simple_repeat Simple_repeat 1 53 0 1 684 2421 77 6 58 chr12 13005627 13005972 -108251558 - ORR1A2 LTR MaLR 0 327 1 1 684 329 343 66 60 chr12 13006113 13006445 -108251085 - MLT1G3 LTR MaLR -5 590 257 2 684 296 328 0 0 chr12 13006570 13006637 -108250893 - B4 SINE B4 -2 290 224 2 684 750 273 35 27 chr12 13007501 13007761 -108249769 - L1M5 LINE L1 -654 5586 5325 2 684 191 61 0 29 chr12 13008199 13008233 -108249297 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2 684 868 70 133 0 chr12 13008233 13008353 -108249177 - B1_Mm SINE Alu -8 139 3 2 684 1744 16 0 0 chr12 13008369 13008561 -108248969 - B2_Mm1a SINE B2 0 193 2 2 684 227 309 29 14 chr12 13008799 13008868 -108248662 - B1F SINE Alu -13 136 67 2 684 723 209 0 0 chr12 13008876 13009010 -108248520 - B3A SINE B2 -63 135 2 2 684 232 330 45 54 chr12 13009089 13009154 -108248376 - PB1D7 SINE Alu -9 111 45 2 684 2264 107 0 58 chr12 13009154 13009501 -108248029 + ORR1A2 LTR MaLR 1 327 0 2 684 232 330 45 54 chr12 13009501 13009547 -108247983 - PB1D7 SINE Alu -76 44 1 2 684 186 43 0 0 chr12 13009550 13009573 -108247957 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 684 1132 217 60 11 chr12 13009864 13010148 -108247382 + ORR1D2 LTR MaLR 73 370 0 3 684 189 0 0 0 chr12 13010350 13010371 -108247159 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 684 488 204 61 68 chr12 13010657 13010804 -108246726 - B1_Mur3 SINE Alu -3 146 1 3 684 359 238 12 0 chr12 13010739 13010819 -108246711 - B4 SINE B4 -142 150 70 3 684 370 300 64 0 chr12 13010828 13010968 -108246562 - B1F SINE Alu 0 149 1 3 684 378 0 0 0 chr12 13011035 13011077 -108246453 + (CAA)n Simple_repeat Simple_repeat 2 43 0 3 684 337 296 41 69 chr12 13011081 13011226 -108246304 - MLT1G1 LTR MaLR -2 577 437 3 684 443 18 18 0 chr12 13011296 13011352 -108246178 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 3 684 415 295 77 109 chr12 13011353 13011780 -108245750 - MLT1G1-int LTR MaLR -585 904 401 3 684 876 320 68 33 chr12 13011810 13012327 -108245203 - L1MC1 LINE L1 -6 6327 5793 3 684 405 200 25 0 chr12 13012367 13012447 -108245083 + ID_B1 SINE B4 142 223 -1 4 684 240 295 83 83 chr12 13012475 13012608 -108244922 - MLT1G1 LTR MaLR -3 576 444 3 684 1130 51 0 0 chr12 13013064 13013201 -108244329 + B1_Mus2 SINE Alu 1 137 -10 4 684 306 0 0 0 chr12 13013201 13013235 -108244295 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 684 511 271 8 32 chr12 13013445 13013571 -108243959 - RSINE1 SINE B4 -1 164 42 4 684 198 0 0 0 chr12 13013897 13013919 -108243611 + (C)n Simple_repeat Simple_repeat 1 22 0 4 684 836 302 57 19 chr12 13013932 13014351 -108243179 - L1M5 LINE L1 -444 5720 5286 4 684 904 278 51 81 chr12 13014482 13014815 -108242715 - ORR1E LTR MaLR -36 323 1 4 684 454 257 125 8 chr12 13014825 13015079 -108242451 + MTEa LTR MaLR 39 379 0 4 684 225 235 268 12 chr12 13015152 13015234 -108242296 - PB1 SINE Alu -14 103 1 4 684 207 0 0 0 chr12 13015340 13015363 -108242167 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 684 819 0 0 0 chr12 13016563 13016654 -108240876 + (TTTC)n Simple_repeat Simple_repeat 4 94 0 5 684 393 22 0 0 chr12 13016654 13016699 -108240831 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 5 684 290 292 0 0 chr12 13017028 13017093 -108240437 - tRNA-Ala-GCA tRNA tRNA -6 69 5 5 684 183 42 0 0 chr12 13017592 13017616 -108239914 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 684 423 274 0 26 chr12 13017653 13017769 -108239761 + PB1 SINE Alu 13 125 -2 5 684 312 270 30 0 chr12 13017780 13017880 -108239650 + BC1_Mm scRNA scRNA 2 104 -48 5 684 486 294 45 41 chr12 13018648 13018914 -108238616 + L1M4 LINE L1 3958 4224 -1922 5 684 924 263 82 3 chr12 13018916 13019198 -108238332 + MTE2b LTR MaLR 1 304 -75 5 684 393 116 0 0 chr12 13019764 13019833 -108237697 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 684 1456 177 236 57 chr12 13020143 13020452 -108237078 + Lx9 LINE L1 7143 7456 -188 5 684 786 52 26 0 chr12 13020452 13020568 -108236962 + (TCTA)n Simple_repeat Simple_repeat 1 119 0 6 684 1456 177 236 57 chr12 13020568 13020665 -108236865 + Lx9 LINE L1 7457 7621 -23 5 684 1168 314 111 27 chr12 13020695 13021142 -108236388 + Lx8 LINE L1 6714 7201 -272 6 684 3003 149 115 47 chr12 13021142 13021714 -108235816 + RMER19C LTR ERVK 1 611 0 6 684 1168 314 111 27 chr12 13021714 13021753 -108235777 + Lx8 LINE L1 7202 7240 -233 6 684 2437 104 50 8 chr12 13021764 13022124 -108235406 - ORR1C1 LTR MaLR -3 375 1 6 684 513 144 0 0 chr12 13022175 13022265 -108235265 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 684 373 301 205 57 chr12 13022859 13023190 -108234340 - MLT1C LTR MaLR -77 390 11 6 684 278 235 15 0 chr12 13023314 13023382 -108234148 + L1ME4a LINE L1 5988 6056 -68 6 684 389 296 79 12 chr12 13023754 13023918 -108233612 + LTR50 LTR ERVL 383 557 -238 6 684 787 268 94 20 chr12 13024033 13024162 -108233368 + MTE2a LTR MaLR 61 196 -183 6 684 336 24 0 0 chr12 13024162 13024203 -108233327 + (CAAG)n Simple_repeat Simple_repeat 2 42 0 6 684 787 268 94 20 chr12 13024203 13024370 -108233160 + MTE2a LTR MaLR 197 379 0 6 684 6761 149 92 5 chr12 13024496 13025731 -108231799 - Lx3C LINE L1 -8 6992 5643 7 684 9969 133 10 2 chr12 13025724 13027280 -108230250 + Lx3C LINE L1 4066 5634 -243 7 684 432 0 0 0 chr12 13027705 13027753 -108229777 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 7 684 1135 149 0 21 chr12 13028216 13028408 -108229122 + B2_Mm2 SINE B2 2 189 -6 7 684 961 117 18 6 chr12 13028515 13028679 -108228851 - L1_Mus3 LINE L1 -1 6637 6472 7 684 530 338 50 21 chr12 13030283 13030522 -108227008 + MER2 DNA MER2_type 100 345 0 7 684 295 320 23 68 chr12 13031688 13031857 -108225673 + B1F SINE Alu 1 149 0 7 684 270 288 14 0 chr12 13031864 13031937 -108225593 + ID4 SINE ID 8 81 -2 7 684 273 241 9 69 chr12 13032486 13032590 -108224940 - PB1D10 SINE Alu -44 105 9 7 684 234 0 0 0 chr12 13032720 13032746 -108224784 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 684 210 37 0 0 chr12 13032767 13032794 -108224736 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7 684 1132 203 13 31 chr12 13033495 13033724 -108223806 + URR1B DNA MER1_type 1 225 0 8 684 492 18 0 0 chr12 13034010 13034067 -108223463 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 684 549 268 0 7 chr12 13034159 13034298 -108223232 + ID_B1 SINE B4 87 224 0 8 684 725 155 0 7 chr12 13034638 13034787 -108222743 + GA-rich Low_complexity Low_complexity 2 149 0 8 684 264 349 119 10 chr12 13035876 13036070 -108221460 - L1ME1 LINE L1 -39 6140 5926 8 684 219 147 0 0 chr12 13036457 13036491 -108221039 - ID4 SINE ID -44 39 6 8 684 2023 176 102 52 chr12 13036539 13037037 -108220493 + RMER15 LTR ERVL 53 575 0 8 684 277 269 8 63 chr12 13037104 13037231 -108220299 + B4A SINE B4 171 290 -2 8 684 3683 187 49 15 chr12 13037432 13038297 -108219233 - RCHARR1 DNA MER1_type -6 968 75 8 684 346 298 28 27 chr12 13038527 13038697 -108218833 - L1ME1 LINE L1 -557 5685 5514 8 684 352 310 133 0 chr12 13039142 13039255 -108218275 + B3A SINE B2 1 128 -70 8 684 660 261 74 31 chr12 13039858 13040399 -108217131 - L1MB3 LINE L1 -15 6168 5580 9 684 8997 15 0 0 chr12 13040407 13041403 -108216127 - L1Md_A LINE L1 0 6582 5587 9 684 574 274 6 79 chr12 13041548 13041726 -108215804 - RSINE1 SINE B4 0 165 1 9 684 310 288 56 28 chr12 13041804 13041816 -108215714 - B1F2 SINE Alu -2 147 137 9 684 513 0 0 0 chr12 13041816 13041873 -108215657 + (TTTTA)n Simple_repeat Simple_repeat 3 59 0 9 684 310 288 56 28 chr12 13041873 13042003 -108215527 - B1F2 SINE Alu -13 136 1 9 684 481 261 58 7 chr12 13041876 13042015 -108215515 - ID_B1 SINE B4 -15 209 64 9 684 272 288 0 12 chr12 13042762 13042843 -108214687 + (TG)n Simple_repeat Simple_repeat 2 81 0 9 684 304 313 104 60 chr12 13042951 13043244 -108214286 - MLT1A1 LTR MaLR -5 403 64 9 684 300 325 74 12 chr12 13043394 13043556 -108213974 + MLT1C LTR MaLR 229 400 -67 9 684 1112 244 46 32 chr12 13043571 13043854 -108213676 + B4 SINE B4 2 288 -4 9 684 253 258 162 20 chr12 13044101 13044200 -108213330 - LTR16E1 LTR ERVL -23 515 403 1 684 260 259 0 0 chr12 13044209 13044267 -108213263 + ID4_ SINE ID 1 58 -25 1 684 745 277 161 86 chr12 13044436 13044875 -108212655 - MLT1F1 LTR MaLR -42 527 64 1 684 271 254 83 45 chr12 13045363 13045495 -108212035 + MLT1L LTR MaLR 166 302 -308 1 684 382 286 177 25 chr12 13045758 13046246 -108211284 - L1ME3A LINE L1 -69 6093 5527 1 684 567 255 161 71 chr12 13046251 13046643 -108210887 - MER82 DNA MER2_type -37 616 190 1 684 225 0 0 0 chr12 13046738 13046763 -108210767 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 1 684 779 270 21 0 chr12 13046765 13046954 -108210576 - ID_B1 SINE B4 -7 217 25 1 684 226 289 47 28 chr12 13046998 13047105 -108210425 - B1F2 SINE Alu -33 116 8 1 684 243 291 29 19 chr12 13047248 13047353 -108210177 + FordPrefect DNA Tip100 1569 1674 -9 1 684 264 306 10 20 chr12 13047526 13047626 -108209904 + MIRc SINE MIR 111 209 -59 1 684 250 288 44 26 chr12 13048065 13048179 -108209351 + B1F2 SINE Alu 1 116 -33 1 684 278 163 0 211 chr12 13048279 13048388 -108209142 + 4.5SRNA scRNA scRNA 1 86 -8 1 684 785 126 17 0 chr12 13048302 13048421 -108209109 + B1_Mur4 SINE Alu 7 127 -23 1 684 552 15 0 0 chr12 13048430 13048495 -108209035 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 684 22 0 0 0 chr12 13048688 13048710 -108208820 + AT_rich Low_complexity Low_complexity 1 22 0 1 684 240 274 14 14 chr12 13049588 13049662 -108207868 - MIR SINE MIR -117 145 72 1 684 585 0 0 0 chr12 13051238 13051303 -108206227 + (CAAG)n Simple_repeat Simple_repeat 4 68 0 1 684 235 236 18 0 chr12 13051969 13052024 -108205506 + Lx8 LINE L1 7416 7471 -2 1 684 290 363 39 6 chr12 13052414 13052594 -108204936 + MIRc SINE MIR 81 266 -2 1 684 338 61 0 20 chr12 13053103 13053153 -108204377 + (GGGTG)n Simple_repeat Simple_repeat 3 51 0 1 684 576 0 0 0 chr12 13053294 13053358 -108204172 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 684 1370 165 0 9 chr12 13054453 13054679 -108202851 + URR1B DNA MER1_type 2 225 0 1 684 495 0 0 0 chr12 13055873 13055928 -108201602 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 684 224 290 29 0 chr12 13056000 13056069 -108201461 - MIRc SINE MIR -112 156 86 1 684 182 330 54 21 chr12 13056095 13056188 -108201342 - L2b LINE L2 0 3375 3280 1 684 297 258 122 10 chr12 13057782 13057880 -108199650 - MIRc SINE MIR -138 130 22 1 684 361 226 0 14 chr12 13058167 13058315 -108199215 + (CA)n Simple_repeat Simple_repeat 1 146 0 1 684 273 216 0 0 chr12 13058503 13058591 -108198939 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 684 417 253 0 0 chr12 13058669 13058847 -108198683 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 684 433 248 240 7 chr12 13058849 13058995 -108198535 - B3A SINE B2 -18 180 1 1 684 445 323 41 19 chr12 13059110 13059378 -108198152 + L1MA4 LINE L1 5653 5926 -374 1 684 246 286 75 28 chr12 13059503 13059664 -108197866 - L2c LINE L2 0 3375 3211 1 684 205 218 177 13 chr12 13060514 13060593 -108196937 - MIRm SINE MIR -110 166 75 1 684 1395 268 62 3 chr12 13062425 13062766 -108194764 - MTE2b LTR MaLR -18 361 1 1 684 261 0 0 0 chr12 13062892 13062921 -108194609 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 684 5704 33 0 1 chr12 13063852 13064515 -108193015 - L1Md_T LINE L1 -1 6581 5920 1 684 854 104 14 7 chr12 13064704 13064849 -108192681 - RCHARR1 DNA MER1_type -102 872 727 1 684 4079 55 0 0 chr12 13064849 13065344 -108192186 - L1Md_F2 LINE L1 -12 6570 6076 1 684 777 133 42 7 chr12 13065356 13065500 -108192030 - L1Md_F3 LINE L1 -3 6581 6433 1 684 246 191 266 16 chr12 13065874 13065938 -108191592 - RSINE1 SINE B4 -22 143 64 1 684 309 356 43 86 chr12 13065981 13066190 -108191340 + RMER30 DNA MER1_type 2 201 -1 1 684 220 221 26 0 chr12 13066567 13066644 -108190886 + GA-rich Low_complexity Low_complexity 4 82 0 1 684 957 57 0 0 chr12 13066648 13066772 -108190758 + (GA)n Simple_repeat Simple_repeat 1 124 0 1 684 241 314 21 85 chr12 13067093 13067187 -108190343 + RMER15 LTR ERVL 328 415 -160 1 684 672 139 0 0 chr12 13067217 13067325 -108190205 + ORR1A3 LTR MaLR 1 108 -218 1 684 1589 93 0 5 chr12 13067335 13067550 -108189980 - ORR1A2 LTR MaLR 0 327 114 1 684 1554 28 0 0 chr12 13068033 13068214 -108189316 - ORR1A1 LTR MaLR 0 346 166 1 684 231 36 0 0 chr12 13068215 13068243 -108189287 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1 684 1476 84 20 5 chr12 13068243 13068446 -108189084 - RLTR27 LTR ERVK -26 283 78 1 684 357 306 36 0 chr12 13068441 13068468 -108189062 - RSINE1 SINE B4 -49 116 2 1 684 649 60 0 0 chr12 13068468 13068552 -108188978 - B2_Mm2 SINE B2 -111 84 1 1 684 1080 69 100 6 chr12 13068552 13068711 -108188819 - ORR1A1 LTR MaLR -172 174 1 1 684 474 239 35 14 chr12 13068977 13069121 -108188409 + B1F SINE Alu 1 147 -2 1 684 3556 23 2 0 chr12 13069296 13069691 -108187839 + MTA_Mm LTR MaLR 1 396 0 1 684 8979 41 8 2 chr12 13069691 13070782 -108186748 + MTA_Mm-int LTR MaLR 1 1098 0 1 684 3544 18 5 0 chr12 13070782 13071176 -108186354 + MTA_Mm LTR MaLR 1 396 0 1 684 317 247 108 4 chr12 13072330 13072460 -108185070 + B1F1 SINE Alu 1 149 0 1 684 205 305 0 50 chr12 13072679 13072779 -108184751 + GA-rich Low_complexity Low_complexity 1 95 0 1 684 842 116 7 0 chr12 13072930 13073068 -108184462 + (TCCA)n Simple_repeat Simple_repeat 1 139 0 1 684 530 297 61 20 chr12 13075001 13075197 -108182333 + MLT1J1 LTR MaLR 9 212 -232 1 684 1104 170 46 0 chr12 13075238 13075432 -108182098 - ORR1C2 LTR MaLR -8 376 174 1 684 1102 218 8 26 chr12 13075412 13075681 -108181849 - ORR1C2 LTR MaLR -117 250 1 1 684 2014 165 82 42 chr12 13075690 13076095 -108181435 - MTC LTR MaLR 0 421 1 1 684 858 175 107 42 chr12 13076096 13076311 -108181219 - MTC-int LTR MaLR 0 1258 1030 1 684 208 227 0 22 chr12 13076772 13076817 -108180713 + L2b LINE L2 3100 3143 -232 1 684 639 0 0 0 chr12 13076835 13076906 -108180624 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 684 229 326 10 92 chr12 13076925 13077023 -108180507 + B4A SINE B4 46 135 -157 1 684 333 272 111 0 chr12 13076979 13077060 -108180470 + PB1D10 SINE Alu 7 96 -21 1 684 260 336 46 31 chr12 13077359 13077496 -108180034 - MLT1J LTR MaLR -234 210 67 1 684 319 226 173 19 chr12 13077803 13077907 -108179623 + MIRc SINE MIR 22 141 -127 1 684 1685 183 98 12 chr12 13077955 13078281 -108179249 - MTC LTR MaLR 0 421 68 1 684 202 316 146 42 chr12 13078364 13078529 -108179001 + MIRc SINE MIR 47 235 -33 1 684 899 265 35 5 chr12 13078560 13078757 -108178773 + ID_B1 SINE B4 17 219 -5 1 684 973 160 130 0 chr12 13078837 13079037 -108178493 + URR1A DNA MER1_type 1 226 0 1 684 269 325 30 111 chr12 13079316 13079451 -108178079 - MER94 DNA AcHobo -4 130 7 1 684 205 354 125 42 chr12 13079597 13079765 -108177765 - MIRb SINE MIR -85 183 2 1 684 405 0 0 0 chr12 13080316 13080361 -108177169 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 684 199 122 20 20 chr12 13080548 13080598 -108176932 + (TGG)n Simple_repeat Simple_repeat 3 52 0 1 684 678 47 0 0 chr12 13080609 13080695 -108176835 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 684 468 0 0 0 chr12 13080695 13080746 -108176784 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 684 557 331 67 0 chr12 13080807 13080985 -108176545 + B3A SINE B2 1 190 -8 1 684 727 193 181 6 chr12 13081043 13081225 -108176305 - B3 SINE B2 0 216 3 1 684 593 27 0 13 chr12 13081274 13081350 -108176180 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1 684 270 0 0 0 chr12 13081549 13081579 -108175951 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 684 408 224 85 17 chr12 13082066 13082109 -108175421 - ORR1C2 LTR MaLR 0 384 342 1 684 4658 123 23 19 chr12 13082109 13082862 -108174668 - RMER6A LTR ERVK 0 756 1 1 684 408 224 85 17 chr12 13082862 13082906 -108174624 - ORR1C2 LTR MaLR -43 341 291 1 684 429 20 0 0 chr12 13082906 13082956 -108174574 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 684 408 224 85 17 chr12 13082956 13082985 -108174545 - ORR1C2 LTR MaLR -94 290 261 1 684 302 187 122 71 chr12 13082969 13083067 -108174463 + ORR1A3 LTR MaLR 39 141 -185 1 684 1073 120 11 22 chr12 13083284 13083463 -108174067 - ORR1C2 LTR MaLR -207 177 1 1 684 267 361 36 29 chr12 13084130 13084267 -108173263 + MIRb SINE MIR 59 196 -72 1 684 190 269 19 19 chr12 13084323 13084376 -108173154 + MIR SINE MIR 69 121 -87 1 684 284 219 12 0 chr12 13085676 13085758 -108171772 + CT-rich Low_complexity Low_complexity 2 84 0 1 684 317 115 25 25 chr12 13086001 13086081 -108171449 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 684 310 175 35 0 chr12 13086090 13086147 -108171383 - HAL1-3A_ME LINE L1 -831 2027 1969 1 684 236 131 28 28 chr12 13086147 13086218 -108171312 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 684 487 183 22 22 chr12 13086243 13086422 -108171108 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 684 273 214 10 20 chr12 13086654 13086754 -108170776 + CT-rich Low_complexity Low_complexity 1 99 0 1 684 209 256 0 0 chr12 13086771 13086810 -108170720 - L2c LINE L2 -80 3307 3269 1 684 299 324 19 19 chr12 13088697 13088801 -108168729 - MER5A1 DNA MER1_type -36 130 27 1 684 282 315 97 23 chr12 13088883 13089041 -108168489 + MIR SINE MIR 51 218 -44 1 684 852 319 63 69 chr12 13089663 13089983 -108167547 + MER82 DNA MER2_type 94 420 -233 1 684 387 0 0 0 chr12 13089983 13090026 -108167504 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 684 852 319 63 69 chr12 13090026 13090166 -108167364 + MER82 DNA MER2_type 421 551 -102 1 684 450 296 83 21 chr12 13090660 13090853 -108166677 - MER58A DNA MER1_type -1 223 19 1 684 791 290 27 48 chr12 13091673 13091966 -108165564 - B4 SINE B4 -4 288 2 1 684 189 288 83 48 chr12 13091976 13092060 -108165470 - MIR SINE MIR -73 189 103 1 684 607 294 11 32 chr12 13092358 13092548 -108164982 + B3A SINE B2 3 188 -10 2 684 216 0 0 0 chr12 13092576 13092600 -108164930 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 684 346 214 36 0 chr12 13093563 13093703 -108163827 + (TGGA)n Simple_repeat Simple_repeat 2 146 0 2 684 338 363 76 43 chr12 13094137 13094347 -108163183 - L2b LINE L2 0 3375 3159 2 684 361 336 8 17 chr12 13094320 13094438 -108163092 + MIR SINE MIR 40 156 -106 2 684 22 0 0 0 chr12 13094444 13094466 -108163064 + AT_rich Low_complexity Low_complexity 1 22 0 2 684 224 377 26 3 chr12 13094613 13094760 -108162770 - MIRc SINE MIR -66 196 50 2 684 372 22 0 0 chr12 13094997 13095042 -108162488 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 684 206 326 10 52 chr12 13095790 13095887 -108161643 - MIRc SINE MIR -149 119 27 2 684 2703 150 19 0 chr12 13097060 13097473 -108160057 + MTC LTR MaLR 1 421 0 2 684 214 180 0 32 chr12 13097604 13097667 -108159863 + (TATTG)n Simple_repeat Simple_repeat 3 63 0 2 684 260 188 0 14 chr12 13100124 13100194 -108157336 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 684 1006 247 82 0 chr12 13100194 13100461 -108157069 - B4A SINE B4 0 292 4 2 684 233 225 43 165 chr12 13102596 13102851 -108154679 - RLTR21 LTR ERVK -266 1306 1083 2 684 736 108 39 0 chr12 13103145 13103275 -108154255 - Lx4A LINE L1 -9 7049 6915 2 684 578 266 173 30 chr12 13103353 13103683 -108153847 + L1MB3 LINE L1 5776 6152 -31 2 684 236 262 12 48 chr12 13104471 13104555 -108152975 - MLT1A0 LTR MaLR -7 441 361 2 684 430 337 60 11 chr12 13104538 13104721 -108152809 - MLT1A0 LTR MaLR -142 223 32 2 684 467 236 56 28 chr12 13104952 13105096 -108152434 - L1MB8 LINE L1 0 6178 6031 2 684 297 109 0 0 chr12 13105400 13105446 -108152084 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 684 378 317 77 0 chr12 13105574 13105678 -108151852 - B3A SINE B2 -48 150 39 2 684 312 283 146 23 chr12 13106349 13106479 -108151051 + RMER15 LTR ERVL 425 570 -5 2 685 280 159 222 0 chr12 13107270 13107333 -108150197 - ID4_ SINE ID -6 77 1 2 685 236 54 54 0 chr12 13108213 13108250 -108149280 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 2 685 205 245 20 0 chr12 13109132 13109181 -108148349 - MIRc SINE MIR -96 172 123 2 685 241 343 29 0 chr12 13110983 13111088 -108146442 - MIR3 SINE MIR -3 205 98 2 685 444 65 13 25 chr12 13111399 13111478 -108146052 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 685 348 219 0 15 chr12 13111480 13111545 -108145985 - B4 SINE B4 -49 243 180 2 685 219 25 24 48 chr12 13111612 13111654 -108145876 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 2 685 363 288 0 12 chr12 13111657 13111738 -108145792 - B4 SINE B4 -212 80 1 2 685 923 267 72 116 chr12 13112313 13112702 -108144828 + MTEa LTR MaLR 6 377 -2 2 685 1487 227 38 54 chr12 13114039 13114373 -108143157 - MTE2b LTR MaLR -12 367 36 2 685 1068 240 203 7 chr12 13114373 13114679 -108142851 + ORR1D2 LTR MaLR 1 366 -4 2 685 1487 227 38 54 chr12 13114679 13114716 -108142814 - MTE2b LTR MaLR -344 35 2 2 685 626 299 52 9 chr12 13114914 13115143 -108142387 - MER97b DNA MER1_type? -281 772 534 2 685 305 236 28 0 chr12 13115237 13115309 -108142221 - U2 snRNA snRNA -114 74 1 2 685 372 286 0 28 chr12 13115298 13115406 -108142124 + B1F SINE Alu 39 143 -6 2 685 401 306 164 13 chr12 13115631 13115914 -108141616 - MLT1A LTR MaLR -6 368 5 2 685 923 264 21 21 chr12 13116309 13116549 -108140981 - MLT1A0 LTR MaLR -4 361 122 2 685 1192 205 9 0 chr12 13116581 13116796 -108140734 - URR1A DNA MER1_type 0 226 10 2 685 343 326 101 69 chr12 13116795 13117101 -108140429 - ORR1D1 LTR MaLR -49 325 10 2 685 880 295 149 17 chr12 13117144 13117499 -108140031 - MTD LTR MaLR 0 419 18 2 685 2231 42 4 0 chr12 13117499 13117761 -108139769 + L1Md_F3 LINE L1 5324 5586 -297 2 685 8800 20 2 1 chr12 13117761 13118757 -108138773 + L1Md_F3 LINE L1 5587 6583 -1 2 685 236 193 153 24 chr12 13118760 13118845 -108138685 - MTE-int LTR MaLR -94 1486 1391 2 685 1772 180 30 16 chr12 13118886 13119240 -108138290 + RMER15 LTR ERVL 3 457 -118 2 685 3295 36 18 8 chr12 13119240 13119632 -108137898 - MTA_Mm LTR MaLR 0 396 1 2 685 891 273 79 45 chr12 13119632 13119750 -108137780 + RMER15 LTR ERVL 458 573 -2 2 685 383 241 32 57 chr12 13119750 13119865 -108137665 + ID_B1 SINE B4 104 215 -9 2 685 418 317 115 0 chr12 13119825 13120008 -108137522 - MTE-int LTR MaLR -181 1399 1196 2 685 872 270 155 19 chr12 13120138 13120286 -108137244 + ORR1E LTR MaLR 1 153 -206 2 685 1204 55 0 7 chr12 13120286 13120434 -108137096 - B1_Mm SINE Alu 0 147 1 2 685 872 270 155 19 chr12 13120434 13120595 -108136935 + ORR1E LTR MaLR 154 351 -8 2 685 24 32 0 0 chr12 13122732 13122763 -108134767 + AT_rich Low_complexity Low_complexity 1 31 0 2 685 2035 114 163 27 chr12 13125523 13125891 -108131639 - MTC LTR MaLR 0 421 4 2 685 600 233 143 0 chr12 13125967 13126100 -108131430 - ID_B1 SINE B4 -57 167 16 2 685 254 274 96 0 chr12 13126463 13126536 -108130994 - B4 SINE B4 -14 278 199 2 685 207 279 11 44 chr12 13126686 13126776 -108130754 - MIRb SINE MIR -96 172 86 2 685 300 242 0 0 chr12 13128013 13128075 -108129455 + L1MA5 LINE L1 6179 6240 -60 2 685 253 312 0 0 chr12 13128350 13128430 -108129100 + MIRc SINE MIR 71 150 -118 2 685 222 348 76 0 chr12 13128680 13128772 -108128758 - MIRm SINE MIR -4 272 174 2 685 367 175 31 64 chr12 13128872 13128968 -108128562 - L2c LINE L2 -233 3154 3041 2 685 312 212 58 37 chr12 13129588 13129695 -108127835 + MIRm SINE MIR 66 170 -38 2 685 1126 80 0 0 chr12 13129723 13129861 -108127669 + B1_Mus2 SINE Alu 1 138 -9 2 685 234 0 0 0 chr12 13130181 13130207 -108127323 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 685 776 192 0 8 chr12 13130229 13130360 -108127170 - B3 SINE B2 -86 130 1 2 685 229 203 0 33 chr12 13130917 13130978 -108126552 + L1MDa LINE L1 2540 2598 -4035 2 685 346 266 47 15 chr12 13131260 13131440 -108126090 + L1MDa LINE L1 5566 5754 -783 2 685 332 250 83 0 chr12 13131440 13131512 -108126018 + B3A SINE B2 1 78 -120 2 685 311 356 73 21 chr12 13132142 13132334 -108125196 + MIRb SINE MIR 10 211 -51 2 685 333 324 54 25 chr12 13134376 13134609 -108122921 + MIR SINE MIR 12 258 -10 2 685 339 253 24 0 chr12 13134781 13134864 -108122666 + B4A SINE B4 1 85 -207 2 685 270 0 0 0 chr12 13134910 13134940 -108122590 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2 685 190 328 0 0 chr12 13135719 13135780 -108121750 + MIRm SINE MIR 118 178 -98 2 685 3338 50 5 0 chr12 13135836 13136234 -108121296 + MTB LTR MaLR 1 400 0 2 685 388 250 119 25 chr12 13136949 13137109 -108120421 + MIR SINE MIR 88 262 0 2 685 274 345 84 64 chr12 13137339 13137683 -108119847 - L3 LINE CR1 -494 3995 3645 2 685 236 100 0 48 chr12 13137784 13137826 -108119704 - MTE2a LTR MaLR -20 359 320 2 685 778 322 70 72 chr12 13137827 13138015 -108119515 + RLTR12B LTR ERVK 1 186 -342 2 685 3057 52 3 5 chr12 13138015 13138398 -108119132 + L1Md_F2 LINE L1 6200 6581 -1 2 685 778 322 70 72 chr12 13138398 13138694 -108118836 + RLTR12B LTR ERVK 187 484 -44 2 685 1010 282 83 76 chr12 13138703 13139058 -108118472 - MTE2a LTR MaLR -54 325 1 2 685 306 269 27 110 chr12 13139535 13139681 -108117849 + MLT1C LTR MaLR 66 199 -191 2 685 322 198 33 100 chr12 13140619 13140709 -108116821 + MLT1B LTR MaLR 20 103 -287 2 685 287 314 23 76 chr12 13140769 13140900 -108116630 + MLT1C LTR MaLR 341 464 -3 2 685 837 92 0 0 chr12 13140931 13141051 -108116479 + (CCA)n Simple_repeat Simple_repeat 2 121 0 2 685 245 339 34 10 chr12 13141109 13141235 -108116295 + MIR SINE MIR 19 145 -63 2 685 1224 120 0 6 chr12 13141824 13142000 -108115530 + B2_Mm2 SINE B2 6 180 -15 2 685 1270 258 46 86 chr12 13142055 13142450 -108115080 - MTE2a LTR MaLR 0 379 1 2 685 281 190 103 0 chr12 13142464 13142522 -108115008 + MER20 DNA MER1_type 99 162 -57 2 685 243 241 132 48 chr12 13143794 13143877 -108113653 + B4 SINE B4 3 92 -200 2 685 558 66 11 32 chr12 13143877 13143971 -108113559 + (GGGA)n Simple_repeat Simple_repeat 4 95 0 2 685 243 366 94 47 chr12 13144097 13144309 -108113221 + L3 LINE CR1 3185 3406 -1083 2 685 548 258 15 15 chr12 13146624 13146754 -108110776 + B1_Mur2 SINE Alu 2 131 -18 2 685 25 0 0 0 chr12 13146828 13146853 -108110677 + AT_rich Low_complexity Low_complexity 1 25 0 2 685 333 302 45 36 chr12 13146896 13147006 -108110524 - PB1D10 SINE Alu 0 117 7 2 685 294 29 0 0 chr12 13147096 13147131 -108110399 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 685 466 298 68 68 chr12 13147149 13147430 -108110100 - B4 SINE B4 -11 281 1 2 685 593 270 63 21 chr12 13147452 13147679 -108109851 + L1M5 LINE L1 5428 5656 -644 2 685 960 226 35 5 chr12 13148059 13148259 -108109271 - B3 SINE B2 -7 209 4 2 685 612 154 16 93 chr12 13148273 13148402 -108109128 - B1_Mur1 SINE Alu -10 139 21 2 685 684 294 39 11 chr12 13148436 13148618 -108108912 - B4 SINE B4 -81 211 25 2 685 416 19 0 19 chr12 13148620 13148674 -108108856 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 685 2204 131 64 6 chr12 13148945 13149290 -108108240 - ORR1B2 LTR MaLR 0 367 3 2 685 4585 158 53 25 chr12 13150163 13150555 -108106975 + RMER13A LTR ERVK 1 387 -473 2 685 1337 93 60 0 chr12 13150555 13150738 -108106792 + B2_Mm2 SINE B2 2 195 0 2 685 4585 158 53 25 chr12 13150738 13151156 -108106374 + RMER13A LTR ERVK 388 834 -26 2 685 248 204 20 0 chr12 13151338 13151387 -108106143 - MTD LTR MaLR 0 374 325 2 685 1199 253 12 0 chr12 13151402 13151651 -108105879 - MTD LTR MaLR -167 252 1 2 685 482 280 8 0 chr12 13152101 13152226 -108105304 + MIRc SINE MIR 139 264 -4 2 685 611 324 76 48 chr12 13153584 13154012 -108103518 - MLT1E3 LTR MaLR -9 644 207 2 685 1140 236 97 38 chr12 13154015 13154354 -108103176 - ORR1E LTR MaLR 0 359 1 2 685 2085 153 72 16 chr12 13154571 13154944 -108102586 - ORR1B1 LTR MaLR 0 394 1 2 685 1103 316 110 36 chr12 13154990 13155381 -108102149 + MLT2B2 LTR ERVL 17 436 -79 3 685 234 351 132 0 chr12 13155665 13155779 -108101751 - L2b LINE L2 -11 3364 3236 3 685 542 302 23 0 chr12 13155944 13156073 -108101457 - RSINE1 SINE B4 -13 152 21 3 685 399 309 144 39 chr12 13156153 13156409 -108101121 + MLT1C LTR MaLR 63 345 -122 3 685 1651 188 117 26 chr12 13158033 13158410 -108099120 + MTD LTR MaLR 1 411 -8 3 685 989 103 15 0 chr12 13158948 13159084 -108098446 + B1_Mus2 SINE Alu 1 138 -9 3 685 375 78 0 0 chr12 13159084 13159135 -108098395 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 685 879 298 52 47 chr12 13159527 13159568 -108097962 - MER74A LTR ERVL -17 541 508 3 685 1391 151 0 30 chr12 13159568 13159800 -108097730 + URR1B DNA MER1_type 1 225 0 3 685 879 298 52 47 chr12 13159800 13160163 -108097367 - MER74A LTR ERVL -51 507 135 3 685 598 270 0 33 chr12 13160192 13160345 -108097185 - B1F SINE Alu 0 149 2 3 685 1897 138 17 0 chr12 13160624 13160921 -108096609 + ORR1B1 LTR MaLR 1 302 -92 3 685 1047 323 68 100 chr12 13161412 13161983 -108095547 - MLT1L LTR MaLR 0 610 58 3 685 319 270 133 11 chr12 13162941 13163031 -108094499 + PB1D10 SINE Alu 7 107 -10 3 685 198 0 0 0 chr12 13163038 13163060 -108094470 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 685 992 275 72 15 chr12 13163069 13163331 -108094199 + B4A SINE B4 2 278 -14 3 685 216 266 0 15 chr12 13163395 13163460 -108094070 + GA-rich Low_complexity Low_complexity 3 66 0 3 685 191 36 36 0 chr12 13165113 13165141 -108092389 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 3 685 589 234 22 16 chr12 13167129 13167272 -108090258 + B1F SINE Alu 1 148 -1 3 685 320 335 0 28 chr12 13167492 13167673 -108089857 + G-rich Low_complexity Low_complexity 4 179 0 3 685 299 287 87 43 chr12 13167764 13167931 -108089599 + MIRc SINE MIR 16 193 -75 3 685 278 196 20 0 chr12 13169057 13169108 -108088422 - ORR1D2 LTR MaLR -2 368 317 3 685 1050 128 169 11 chr12 13169113 13169302 -108088228 - URR1A DNA MER1_type -7 219 1 3 685 1109 234 108 0 chr12 13169302 13169571 -108087959 - ORR1D2 LTR MaLR -51 319 22 3 685 1662 233 49 29 chr12 13169892 13170303 -108087227 - MTD LTR MaLR 0 419 1 3 685 653 158 22 29 chr12 13170433 13170570 -108086960 - U8 snRNA snRNA 0 136 1 3 685 292 253 56 22 chr12 13171431 13171520 -108086010 + MIR SINE MIR 128 219 -43 3 685 183 360 26 39 chr12 13171608 13171686 -108085844 - MIRb SINE MIR -146 122 46 3 685 237 317 60 24 chr12 13172140 13172224 -108085306 + PB1D10 SINE Alu 24 110 -7 3 685 1259 305 34 38 chr12 13172451 13172894 -108084636 + MTE-int LTR MaLR 1105 1545 -35 3 685 306 304 100 57 chr12 13173111 13173402 -108084128 - MLT1A0 LTR MaLR -171 453 151 3 685 303 148 0 55 chr12 13173550 13173612 -108083918 - B1F SINE Alu -2 147 60 3 685 465 252 24 16 chr12 13173676 13173801 -108083729 - MLT1A0 LTR MaLR -229 136 11 3 685 185 372 28 85 chr12 13173801 13173942 -108083588 - MIR SINE MIR -93 169 37 3 685 276 160 0 51 chr12 13174500 13174579 -108082951 + (TATG)n Simple_repeat Simple_repeat 4 78 0 3 685 646 246 208 20 chr12 13174582 13174827 -108082703 - B4A SINE B4 0 292 2 3 685 739 321 99 29 chr12 13174878 13175423 -108082107 + MLT1G1-int LTR MaLR 4 618 -791 3 685 245 278 28 0 chr12 13175483 13175555 -108081975 + MLT1G1 LTR MaLR 501 574 -5 3 685 1265 245 91 9 chr12 13176334 13176684 -108080846 + MTE2b LTR MaLR 1 379 0 3 685 443 48 16 0 chr12 13176691 13176753 -108080777 + (TCTCCC)n Simple_repeat Simple_repeat 5 67 0 3 685 411 137 0 0 chr12 13177393 13177466 -108080064 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 685 222 261 75 30 chr12 13178590 13178657 -108078873 - L3 LINE CR1 -3 4486 4417 3 685 181 233 63 48 chr12 13178896 13178959 -108078571 - L2c LINE L2 -84 3303 3240 3 685 279 236 14 0 chr12 13179190 13179262 -108078268 - MLT1I LTR MaLR -6 405 333 3 685 339 253 0 39 chr12 13179394 13179472 -108078058 - MER3 DNA MER1_type -130 79 5 3 685 429 371 80 6 chr12 13179484 13179660 -108077870 + MER58A DNA MER1_type 2 190 -34 3 685 776 299 62 25 chr12 13180327 13180602 -108076928 - B4 SINE B4 -6 286 2 3 685 440 213 55 39 chr12 13180617 13180744 -108076786 - MIRb SINE MIR -112 156 28 3 685 343 300 82 51 chr12 13181611 13181769 -108075761 + B4A SINE B4 130 292 0 3 685 180 135 0 0 chr12 13181782 13181819 -108075711 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 685 262 188 0 30 chr12 13181833 13181899 -108075631 + (CAGAGA)n Simple_repeat Simple_repeat 1 64 0 3 685 525 305 65 13 chr12 13181911 13182064 -108075466 + ID_B1 SINE B4 62 222 -2 3 685 333 0 0 0 chr12 13182274 13182311 -108075219 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 685 441 0 0 0 chr12 13182601 13182650 -108074880 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 685 409 286 49 12 chr12 13182887 13183050 -108074480 - L1MB8 LINE L1 -178 6000 5832 3 685 545 42 14 0 chr12 13183341 13183413 -108074117 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 685 299 295 113 11 chr12 13183508 13183673 -108073857 - MIRc SINE MIR -41 227 40 3 685 532 192 39 0 chr12 13184154 13184258 -108073272 + B1_Mur2 SINE Alu 2 109 -40 3 685 292 116 30 50 chr12 13184262 13184362 -108073168 + GA-rich Low_complexity Low_complexity 3 100 0 3 685 1249 213 142 45 chr12 13184821 13185198 -108072332 + L1MA4A LINE L1 5343 5756 -547 3 685 482 31 0 15 chr12 13185198 13185263 -108072267 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 685 1014 251 150 28 chr12 13185263 13185406 -108072124 + L1MA4A LINE L1 5757 5942 -247 3 685 741 266 104 0 chr12 13185414 13185587 -108071943 + ID_B1 SINE B4 4 194 -30 3 685 229 351 32 0 chr12 13185505 13185599 -108071931 + B1_Mur3 SINE Alu 32 128 -21 3 685 469 202 147 7 chr12 13185786 13185912 -108071618 - B1F2 SINE Alu 0 149 6 3 685 802 230 81 63 chr12 13186166 13186389 -108071141 + B4 SINE B4 1 227 -65 3 685 683 219 27 29 chr12 13186390 13186549 -108070981 + RSINE1 SINE B4 3 163 -2 3 685 197 139 23 0 chr12 13186653 13186696 -108070834 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 685 225 0 0 0 chr12 13186873 13186898 -108070632 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 685 705 56 0 0 chr12 13187390 13187480 -108070050 + (TC)n Simple_repeat Simple_repeat 2 91 0 3 685 392 0 21 0 chr12 13187652 13187700 -108069830 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 685 232 270 26 51 chr12 13188269 13188347 -108069183 + ID4 SINE ID 5 80 -3 3 685 216 0 0 0 chr12 13188575 13188599 -108068931 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 685 306 0 0 0 chr12 13189610 13189644 -108067886 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 3 685 2182 127 103 16 chr12 13190831 13191199 -108066331 - RLTR9D LTR ERVK -3 400 1 3 685 618 269 86 47 chr12 13192401 13192821 -108064709 - L1MB5 LINE L1 -283 6008 5560 3 685 279 0 0 0 chr12 13193316 13193347 -108064183 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 685 183 129 0 0 chr12 13193352 13193383 -108064147 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 685 540 255 231 25 chr12 13193857 13194099 -108063431 - B4A SINE B4 0 292 1 3 685 789 173 14 14 chr12 13194313 13194454 -108063076 + B1_Mur3 SINE Alu 9 149 0 3 685 369 189 0 0 chr12 13195487 13195582 -108061948 + T-rich Low_complexity Low_complexity 1 95 0 3 685 1086 87 0 0 chr12 13195597 13195735 -108061795 - B1_Mus1 SINE Alu -10 138 1 3 685 198 103 0 0 chr12 13195850 13195879 -108061651 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 685 355 285 93 14 chr12 13196013 13196152 -108061378 + MIR SINE MIR 38 187 -75 3 685 320 0 0 24 chr12 13196394 13196435 -108061095 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 685 672 189 0 70 chr12 13196437 13196538 -108060992 - B1_Mus1 SINE Alu -14 134 41 3 685 1005 158 0 0 chr12 13196538 13196715 -108060815 + (TCTCTG)n Simple_repeat Simple_repeat 3 179 0 3 685 672 189 0 70 chr12 13196715 13196755 -108060775 - B1_Mus1 SINE Alu -108 40 3 3 685 363 44 0 0 chr12 13196892 13196937 -108060593 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 3 685 480 343 39 29 chr12 13197184 13197388 -108060142 - MIRb SINE MIR -12 256 51 3 685 371 281 60 84 chr12 13197388 13197526 -108060004 + RSINE1 SINE B4 2 136 -29 3 685 186 103 0 0 chr12 13197526 13197555 -108059975 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 685 371 281 60 84 chr12 13197555 13197583 -108059947 + RSINE1 SINE B4 137 164 -1 3 685 1095 304 124 21 chr12 13199068 13200186 -108057344 + L1M2 LINE L1 1496 2712 -4137 3 685 1203 49 0 7 chr12 13200189 13200328 -108057202 + B1_Mm SINE Alu 1 139 -8 3 685 216 67 0 0 chr12 13200328 13200358 -108057172 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 3 685 459 0 0 0 chr12 13200423 13200474 -108057056 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 685 414 0 0 0 chr12 13201014 13201060 -108056470 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 685 256 288 49 155 chr12 13201677 13201810 -108055720 + MER3 DNA MER1_type 3 111 -98 3 685 823 142 227 0 chr12 13201810 13201986 -108055544 + B3 SINE B2 1 216 0 3 685 256 288 49 155 chr12 13201986 13202078 -108055452 + MER3 DNA MER1_type 112 204 -5 3 685 654 13 0 0 chr12 13202220 13202295 -108055235 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 685 531 0 0 0 chr12 13202295 13202353 -108055177 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 685 735 288 35 0 chr12 13203127 13203325 -108054205 + ID_B1 SINE B4 16 220 -4 3 685 423 0 0 0 chr12 13203382 13203429 -108054101 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 685 304 273 17 76 chr12 13203505 13203624 -108053906 - PB1D10 SINE Alu -1 116 5 3 685 343 244 112 55 chr12 13206448 13206658 -108050872 + MIRc SINE MIR 1 218 -50 3 685 184 269 58 29 chr12 13206791 13206860 -108050670 + L3 LINE CR1 2081 2151 -2338 3 685 418 223 43 0 chr12 13207124 13207218 -108050312 + PB1 SINE Alu 1 98 -29 4 685 247 217 33 0 chr12 13207796 13207856 -108049674 + GA-rich Low_complexity Low_complexity 1 62 0 4 685 221 388 19 0 chr12 13208659 13208762 -108048768 + L3 LINE CR1 3907 4011 -478 4 685 182 155 63 79 chr12 13209877 13209940 -108047590 + MIRc SINE MIR 16 77 -191 4 685 275 218 10 0 chr12 13210125 13210226 -108047304 + (CAGA)n Simple_repeat Simple_repeat 3 104 0 4 685 242 295 28 19 chr12 13210597 13210704 -108046826 - L1MB7 LINE L1 -8 6176 6069 4 685 501 97 0 0 chr12 13210793 13210865 -108046665 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 685 346 221 46 46 chr12 13210867 13210976 -108046554 - L1M3 LINE L1 -460 5723 5615 4 685 884 236 6 11 chr12 13211257 13211433 -108046097 + B3 SINE B2 8 182 -34 4 685 1827 186 94 18 chr12 13211440 13211824 -108045706 - MTC LTR MaLR -8 413 1 4 685 5611 147 147 31 chr12 13211827 13212952 -108044578 - MTC-int LTR MaLR -3 1255 1 4 685 2190 155 112 3 chr12 13212952 13213328 -108044202 - MTC LTR MaLR 0 421 5 4 685 492 48 0 0 chr12 13213413 13213476 -108044054 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 685 847 268 234 6 chr12 13213523 13213869 -108043661 + Lx8 LINE L1 7047 7471 -2 4 685 280 333 56 31 chr12 13214645 13214806 -108042724 + MLT1K LTR MaLR 386 550 -45 4 685 942 229 21 50 chr12 13214966 13215246 -108042284 - B4A SINE B4 -18 274 3 4 685 274 368 39 23 chr12 13216989 13217117 -108040413 - L2b LINE L2 -1 3374 3245 4 685 1071 258 138 59 chr12 13217220 13217445 -108040085 - L1M4 LINE L1 -2900 3246 3042 4 685 763 172 128 43 chr12 13217445 13217633 -108039897 - B3 SINE B2 -12 204 1 4 685 1071 258 138 59 chr12 13217633 13218080 -108039450 - L1M4 LINE L1 -3105 3041 2521 4 685 660 227 17 0 chr12 13218168 13218287 -108039243 + B1_Mur3 SINE Alu 9 129 -20 4 685 504 0 0 0 chr12 13218314 13218370 -108039160 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 685 341 22 22 0 chr12 13219345 13219391 -108038139 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 685 906 157 7 0 chr12 13219604 13219751 -108037779 - URR1A DNA MER1_type 0 226 79 4 685 450 0 0 0 chr12 13219851 13219901 -108037629 + (TTAG)n Simple_repeat Simple_repeat 3 52 0 4 685 1111 72 0 0 chr12 13219901 13220040 -108037490 - B1_Mus2 SINE Alu -8 139 1 4 685 188 286 159 2 chr12 13220424 13220533 -108036997 + MIRb SINE MIR 141 262 0 4 685 696 266 32 2 chr12 13220913 13221101 -108036429 + B3 SINE B2 4 198 0 4 685 186 43 0 0 chr12 13226049 13226072 -108031458 + (A)n Simple_repeat Simple_repeat 1 23 0 4 685 396 209 0 0 chr12 13227006 13227073 -108030457 + PB1D10 SINE Alu 1 67 -50 4 685 8605 23 2 0 chr12 13227651 13228636 -108028894 + L1Md_T LINE L1 4600 5586 -297 4 685 9029 32 0 0 chr12 13228636 13229632 -108027898 + L1Md_T LINE L1 5587 6582 0 4 685 249 33 0 0 chr12 13229648 13229678 -108027852 + (A)n Simple_repeat Simple_repeat 1 30 0 4 685 390 169 60 12 chr12 13229934 13230018 -108027512 + PB1D10 SINE Alu 1 88 -29 4 685 789 221 96 67 chr12 13231154 13231363 -108026167 + B3 SINE B2 2 216 0 4 685 248 26 77 0 chr12 13231363 13231402 -108026128 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 4 685 813 223 98 58 chr12 13232454 13232730 -108024800 + B4A SINE B4 3 289 -3 4 685 406 264 93 0 chr12 13233631 13233760 -108023770 - B1F2 SINE Alu -8 141 1 4 685 515 112 0 11 chr12 13234484 13234574 -108022956 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 685 317 250 111 0 chr12 13235383 13235491 -108022039 + L1MB4 LINE L1 6012 6131 -49 4 685 21 0 0 0 chr12 13236299 13236320 -108021210 + AT_rich Low_complexity Low_complexity 1 21 0 4 685 254 280 0 74 chr12 13236351 13236432 -108021098 + MIR SINE MIR 21 95 -113 4 685 545 145 208 83 chr12 13236798 13236918 -108020612 - B1_Mus2 SINE Alu -11 136 2 4 685 21 0 0 0 chr12 13237764 13237785 -108019745 + AT_rich Low_complexity Low_complexity 1 21 0 4 685 439 270 217 0 chr12 13237867 13238056 -108019474 - MER2 DNA MER2_type -30 315 86 4 686 22 0 0 0 chr12 13238577 13238599 -108018931 + AT_rich Low_complexity Low_complexity 1 22 0 4 686 645 286 101 10 chr12 13239018 13239216 -108018314 + B3 SINE B2 1 216 0 4 686 216 0 0 0 chr12 13240039 13240063 -108017467 + (CAGAA)n Simple_repeat Simple_repeat 2 25 0 4 686 441 54 0 0 chr12 13240125 13240181 -108017349 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 686 825 223 95 26 chr12 13241352 13241541 -108015989 - B3 SINE B2 -11 205 4 4 686 216 0 0 0 chr12 13241547 13241571 -108015959 + (CCCCCA)n Simple_repeat Simple_repeat 4 27 0 4 686 303 253 0 62 chr12 13241571 13241651 -108015879 - B1F1 SINE Alu -5 144 70 4 686 310 227 261 0 chr12 13242380 13242468 -108015062 + PB1D10 SINE Alu 1 111 -6 4 686 294 299 93 46 chr12 13243261 13243298 -108014232 + MIRb SINE MIR 87 123 -145 4 686 1768 180 214 13 chr12 13243298 13243686 -108013844 + RMER4A LTR ERVK 1 466 0 4 686 294 299 93 46 chr12 13243686 13243799 -108013731 + MIRb SINE MIR 124 243 -25 4 686 1434 143 4 48 chr12 13244266 13244516 -108013014 - Lx3A LINE L1 -3 6978 6740 4 686 210 322 152 35 chr12 13245003 13245286 -108012244 + L2a LINE L2 1983 2298 -1121 4 686 265 292 254 24 chr12 13245303 13245802 -108011728 + L2a LINE L2 2774 3406 -20 4 686 242 245 0 0 chr12 13246123 13246172 -108011358 + B1F SINE Alu 1 49 -100 4 686 2036 164 59 21 chr12 13246648 13246981 -108010549 + ORR1B1 LTR MaLR 1 351 -43 4 686 849 161 54 0 chr12 13246981 13247111 -108010419 + B1_Mur4 SINE Alu 1 137 -13 4 686 2036 164 59 21 chr12 13247111 13247150 -108010380 + ORR1B1 LTR MaLR 352 387 -7 4 686 230 328 15 0 chr12 13249621 13249688 -108007842 - L3 LINE CR1 -45 4444 4377 4 686 403 185 32 143 chr12 13251012 13251138 -108006392 + MT2B LTR ERVL 165 276 -325 4 686 892 63 23 31 chr12 13251039 13251169 -108006361 + B1_Mus2 SINE Alu 19 147 0 4 686 1525 174 180 14 chr12 13251289 13251650 -108005880 + MTC LTR MaLR 1 421 0 4 686 355 308 25 12 chr12 13253491 13253652 -108003878 + L1MA6 LINE L1 6138 6300 0 4 686 224 200 0 18 chr12 13253983 13254039 -108003491 + T-rich Low_complexity Low_complexity 5 59 0 4 686 760 111 78 16 chr12 13254044 13254172 -108003358 - B1_Mus2 SINE Alu 0 147 12 4 686 354 278 80 40 chr12 13254172 13254189 -108003341 - B4A SINE B4 -60 227 77 4 686 355 189 189 0 chr12 13254430 13254525 -108003005 + RSINE1 SINE B4 16 128 -37 4 686 246 220 0 0 chr12 13255105 13255164 -108002366 + (TATG)n Simple_repeat Simple_repeat 2 60 0 4 686 192 97 0 0 chr12 13255441 13255472 -108002058 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 686 24 0 0 0 chr12 13255975 13255999 -108001531 + GC_rich Low_complexity Low_complexity 1 24 0 4 686 484 321 23 8 chr12 13256692 13256824 -108000706 + MIR SINE MIR 16 149 -113 4 686 214 136 45 0 chr12 13257054 13257098 -108000432 + GA-rich Low_complexity Low_complexity 1 46 0 4 686 251 293 26 13 chr12 13257941 13258017 -107999513 + RLTR33 LTR ERVK 517 593 -85 4 686 328 100 20 0 chr12 13258333 13258383 -107999147 + ORR1B2 LTR MaLR 1 51 -316 4 686 246 317 119 52 chr12 13258648 13258687 -107998843 - B3 SINE B2 -1 215 10 4 686 665 263 19 13 chr12 13258687 13258841 -107998689 - RSINE1 SINE B4 0 165 11 4 686 1007 278 15 26 chr12 13259021 13259243 -107998287 + B4A SINE B4 2 222 -70 4 686 228 135 0 0 chr12 13259243 13259280 -107998250 + (CAT)n Simple_repeat Simple_repeat 3 39 0 4 686 1007 278 15 26 chr12 13259280 13259327 -107998203 + B4A SINE B4 223 268 -24 4 686 4933 30 2 0 chr12 13259355 13259893 -107997637 + L1Md_T LINE L1 6044 6582 0 4 686 210 180 0 20 chr12 13259979 13260030 -107997500 + A-rich Low_complexity Low_complexity 5 54 0 4 686 378 282 86 50 chr12 13260690 13260888 -107996642 - MLT1H1 LTR MaLR -1 554 350 4 686 536 314 106 34 chr12 13261308 13261545 -107995985 + MLT1J LTR MaLR 24 277 -235 4 686 26 30 0 0 chr12 13261714 13261747 -107995783 + AT_rich Low_complexity Low_complexity 1 33 0 4 686 577 309 141 45 chr12 13261758 13262199 -107995331 - MLT1F LTR MaLR -6 542 60 4 686 509 333 109 69 chr12 13263443 13263923 -107993607 - MLT1G3 LTR MaLR -1 594 50 4 686 515 231 0 40 chr12 13263931 13264057 -107993473 - ERVL-B4-int LTR ERVL -682 5032 4912 4 686 307 263 30 106 chr12 13264124 13264256 -107993274 + MT2B LTR ERVL 136 257 -344 4 686 672 220 0 0 chr12 13264163 13264281 -107993249 + B1_Mur1 SINE Alu 12 129 -20 4 686 260 410 11 21 chr12 13264358 13264545 -107992985 - LTR88b LTR Gypsy? -9 828 644 4 686 914 136 7 0 chr12 13264807 13264962 -107992568 + (GAAA)n Simple_repeat Simple_repeat 1 156 0 4 686 384 249 25 138 chr12 13264971 13265167 -107992363 + Lx7 LINE L1 7175 7348 -348 4 686 12274 142 32 42 chr12 13265434 13267538 -107989992 - Lx4A LINE L1 0 7058 4929 4 686 3693 38 43 0 chr12 13267538 13267956 -107989574 + RLTR10C LTR ERVK 1 436 0 4 686 12274 170 29 84 chr12 13267956 13269754 -107987776 - Lx4A LINE L1 -952 4928 3297 4 686 198 0 0 0 chr12 13269774 13269796 -107987734 + (A)n Simple_repeat Simple_repeat 1 22 0 4 686 6362 55 0 0 chr12 13269853 13270715 -107986815 - L1_Mus1 LINE L1 0 6567 5835 4 686 259 280 140 0 chr12 13271018 13271111 -107986419 - Tigger15a DNA TcMar -519 196 91 4 686 22 35 0 0 chr12 13271207 13271236 -107986294 + AT_rich Low_complexity Low_complexity 1 29 0 4 686 346 302 20 20 chr12 13271839 13271937 -107985593 + G-rich Low_complexity Low_complexity 3 100 0 4 686 595 299 40 50 chr12 13272091 13272292 -107985238 - MLT1A0 LTR MaLR -4 361 163 4 686 342 0 0 0 chr12 13272308 13272346 -107985184 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 686 354 305 222 34 chr12 13272377 13272584 -107984946 - B4A SINE B4 -43 249 4 4 686 195 42 0 0 chr12 13272962 13272986 -107984544 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 4 686 523 230 0 29 chr12 13272990 13273093 -107984437 - PB1D10 SINE Alu -17 100 1 5 686 277 289 10 91 chr12 13273007 13273106 -107984424 - MT2B2 LTR ERVL -343 241 151 5 686 210 358 21 0 chr12 13273571 13273666 -107983864 + PB1 SINE Alu 24 120 -7 5 686 236 254 34 0 chr12 13273763 13273822 -107983708 - B3 SINE B2 -103 113 53 5 686 1475 135 100 0 chr12 13273822 13274081 -107983449 + ORR1A2 LTR MaLR 1 285 -42 5 686 1254 72 33 6 chr12 13274090 13274271 -107983259 + B2_Mm2 SINE B2 9 194 -1 5 686 395 21 0 0 chr12 13274275 13274322 -107983208 + ORR1A2 LTR MaLR 272 318 -8 5 686 378 146 0 0 chr12 13274328 13274383 -107983147 - B3 SINE B2 -161 55 1 5 686 307 330 43 112 chr12 13274481 13274829 -107982701 - L2a LINE L2 -107 3319 2996 5 686 207 0 0 0 chr12 13274836 13274859 -107982671 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 686 309 51 0 0 chr12 13275105 13275144 -107982386 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 5 686 372 287 0 109 chr12 13275351 13275488 -107982042 + B1F SINE Alu 2 123 -26 5 686 23 0 0 0 chr12 13276104 13276127 -107981403 + GC_rich Low_complexity Low_complexity 1 23 0 5 686 313 0 85 0 chr12 13276445 13276492 -107981038 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 5 686 324 0 0 0 chr12 13276511 13276547 -107980983 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 686 21 36 0 0 chr12 13277940 13277968 -107979562 + AT_rich Low_complexity Low_complexity 1 28 0 5 686 759 239 9 51 chr12 13278237 13278453 -107979077 - B3 SINE B2 -8 208 2 5 686 360 0 0 0 chr12 13278823 13278863 -107978667 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 686 293 0 27 0 chr12 13278875 13278912 -107978618 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 686 1142 88 0 0 chr12 13279190 13279337 -107978193 - B1_Mus1 SINE Alu 0 148 2 5 686 242 318 0 0 chr12 13280257 13280320 -107977210 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 686 732 255 59 0 chr12 13281516 13281720 -107975810 + B3 SINE B2 1 216 0 5 686 449 349 35 35 chr12 13281840 13282128 -107975402 + B4A SINE B4 2 289 -3 5 686 189 0 0 0 chr12 13282545 13282566 -107974964 + (T)n Simple_repeat Simple_repeat 1 21 0 5 686 1302 266 15 19 chr12 13283872 13284230 -107973300 - ORR1E LTR MaLR 0 379 3 5 686 282 304 43 0 chr12 13285539 13285654 -107971876 - L1M5 LINE L1 -454 5670 5551 5 686 1919 152 53 6 chr12 13286913 13287251 -107970279 - MTC LTR MaLR -8 413 60 5 686 300 224 91 27 chr12 13287498 13287608 -107969922 - ORR1E LTR MaLR -3 376 260 5 686 690 288 21 16 chr12 13287619 13287813 -107969717 - ORR1E LTR MaLR -164 195 1 5 686 261 235 0 0 chr12 13289298 13289348 -107968182 + T-rich Low_complexity Low_complexity 19 68 0 5 686 1188 68 0 0 chr12 13289348 13289495 -107968035 - B1_Mus2 SINE Alu 0 147 1 5 686 261 235 0 0 chr12 13289495 13289512 -107968018 + T-rich Low_complexity Low_complexity 2 18 0 5 686 1066 64 14 14 chr12 13290198 13290341 -107967189 + B1_Mus2 SINE Alu 5 147 0 5 686 240 111 0 0 chr12 13290341 13290386 -107967144 + (A)n Simple_repeat Simple_repeat 1 45 0 5 686 367 250 8 68 chr12 13290804 13290937 -107966593 - RCHARR1 DNA MER1_type -8 966 842 5 686 2653 249 78 4 chr12 13290993 13291670 -107965860 - RCHARR1 DNA MER1_type -245 729 3 5 686 294 95 0 0 chr12 13292151 13292193 -107965337 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 686 3266 65 2 2 chr12 13292273 13292690 -107964840 - L1_Mus2 LINE L1 -1 6565 6149 5 686 3867 65 26 37 chr12 13292825 13293364 -107964166 + L1Md_F2 LINE L1 6044 6576 -6 5 686 1045 23 0 0 chr12 13293370 13293498 -107964032 + B1_Mm SINE Alu 20 147 0 5 686 210 91 0 0 chr12 13293498 13293531 -107963999 + (A)n Simple_repeat Simple_repeat 1 33 0 5 686 396 280 80 59 chr12 13294267 13294532 -107962998 - MER33 DNA MER1_type -1 323 61 5 686 557 271 67 87 chr12 13294589 13294888 -107962642 - MER34A LTR ERV1 -6 565 273 5 686 437 320 25 32 chr12 13294922 13295080 -107962450 - MER34A LTR ERV1 -390 181 25 5 686 793 305 86 67 chr12 13295782 13296608 -107960922 - L1ME2z LINE L1 -125 6319 5478 5 686 453 168 0 0 chr12 13297463 13297570 -107959960 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 686 218 371 106 18 chr12 13297570 13297790 -107959740 - L2a LINE L2 -279 3147 2898 5 686 915 207 56 0 chr12 13298665 13298863 -107958667 - B3 SINE B2 -6 210 2 5 686 1073 68 0 7 chr12 13299457 13299605 -107957925 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 5 686 1044 263 125 8 chr12 13301796 13302164 -107955366 - Lx8 LINE L1 -394 7079 6669 5 686 939 268 105 0 chr12 13302159 13302510 -107955020 + Lx8 LINE L1 7084 7471 -2 5 686 213 39 0 0 chr12 13302510 13302536 -107954994 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 686 21 0 0 0 chr12 13302607 13302628 -107954902 + AT_rich Low_complexity Low_complexity 1 21 0 5 686 21 0 0 0 chr12 13302971 13302992 -107954538 + AT_rich Low_complexity Low_complexity 1 21 0 5 686 895 214 63 16 chr12 13302994 13303184 -107954346 - B3 SINE B2 -6 210 12 5 686 24 0 0 0 chr12 13303203 13303227 -107954303 + AT_rich Low_complexity Low_complexity 1 24 0 5 686 1544 132 8 4 chr12 13303336 13303572 -107953958 - MTB_Mm LTR MaLR 0 407 171 5 686 351 0 0 0 chr12 13303573 13303612 -107953918 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 686 449 14 42 14 chr12 13303612 13303683 -107953847 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 686 388 293 68 0 chr12 13303696 13303829 -107953701 - L1MC5 LINE L1 -501 7460 7319 5 686 226 287 83 113 chr12 13304069 13304273 -107953257 + LTR81A LTR ERV1? 1083 1280 -70 5 686 470 267 220 10 chr12 13304346 13304660 -107952870 - MLT1D LTR MaLR -4 501 122 5 686 476 257 9 45 chr12 13304833 13304943 -107952587 + PB1D10 SINE Alu 7 112 -5 5 686 489 209 28 102 chr12 13305470 13305646 -107951884 - RSINE1 SINE B4 0 165 3 5 686 2191 157 80 18 chr12 13306164 13306613 -107950917 - Lx4A LINE L1 0 7058 6582 5 686 500 280 31 57 chr12 13307257 13307416 -107950114 + RSINE1 SINE B4 11 165 0 5 686 1131 68 7 0 chr12 13308274 13308421 -107949109 + B1_Mus1 SINE Alu 1 148 0 5 686 235 292 146 49 chr12 13308487 13308631 -107948899 - MLT1J1 LTR MaLR -264 180 23 5 686 22 35 0 0 chr12 13308930 13308959 -107948571 + AT_rich Low_complexity Low_complexity 1 29 0 5 686 192 77 0 0 chr12 13308983 13309009 -107948521 + (A)n Simple_repeat Simple_repeat 1 26 0 5 686 1263 14 7 0 chr12 13309561 13309706 -107947824 + B1_Mus2 SINE Alu 2 147 0 5 686 797 293 84 40 chr12 13311900 13312330 -107945200 - L1MC4 LINE L1 -5757 458 10 5 686 414 0 0 0 chr12 13312381 13312427 -107945103 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 686 189 0 0 0 chr12 13312427 13312447 -107945083 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 5 686 672 235 45 19 chr12 13312455 13312621 -107944909 - B3A SINE B2 -27 168 9 5 686 378 302 93 0 chr12 13312651 13312780 -107944750 - B1F SINE Alu -8 141 1 5 686 434 255 49 7 chr12 13312857 13312999 -107944531 - L1M3 LINE L1 -537 5643 5496 5 686 279 175 143 0 chr12 13313308 13313371 -107944159 - B1_Mur4 SINE Alu -55 95 24 5 686 234 91 0 0 chr12 13313372 13313405 -107944125 + (TCTA)n Simple_repeat Simple_repeat 3 35 0 5 686 446 245 27 9 chr12 13315413 13315524 -107942006 - B4 SINE B4 -175 117 5 5 686 254 189 38 0 chr12 13315694 13315747 -107941783 + CT-rich Low_complexity Low_complexity 2 56 0 5 686 292 272 55 64 chr12 13315867 13315977 -107941553 + L2a LINE L2 3310 3418 -8 5 686 279 0 0 0 chr12 13317399 13317430 -107940100 + (CAA)n Simple_repeat Simple_repeat 1 31 0 5 686 255 140 0 0 chr12 13317477 13317527 -107940003 + (CAAG)n Simple_repeat Simple_repeat 2 51 0 5 686 713 234 28 33 chr12 13317917 13318129 -107939401 - B3 SINE B2 -5 211 1 5 686 365 278 143 0 chr12 13318134 13318260 -107939270 - B1F SINE Alu 0 149 6 5 686 23 54 0 0 chr12 13319023 13319060 -107938470 + AT_rich Low_complexity Low_complexity 1 37 0 5 686 383 153 0 14 chr12 13319061 13319134 -107938396 - Lx6 LINE L1 -15 7445 7374 5 686 182 337 65 0 chr12 13320311 13320403 -107937127 - MIRm SINE MIR -171 105 8 5 686 837 189 322 8 chr12 13322640 13322902 -107934628 - Lx4B LINE L1 -122 6936 6593 5 686 198 0 0 0 chr12 13323319 13323341 -107934189 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 686 1158 29 0 0 chr12 13323341 13323479 -107934051 - B1_Mus1 SINE Alu -10 138 1 5 686 24 77 0 0 chr12 13324770 13324822 -107932708 + AT_rich Low_complexity Low_complexity 1 52 0 5 686 180 0 0 0 chr12 13324926 13324946 -107932584 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 5 686 1167 321 89 28 chr12 13324952 13326514 -107931016 - L1M2 LINE L1 -2356 3787 2131 5 686 243 0 0 0 chr12 13326571 13326598 -107930932 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 686 411 283 114 54 chr12 13326797 13327077 -107930453 - L1MEg LINE L1 -4664 1420 1124 5 686 26 30 0 0 chr12 13327707 13327740 -107929790 + AT_rich Low_complexity Low_complexity 1 33 0 5 686 424 208 409 0 chr12 13327913 13328062 -107929468 - B3 SINE B2 -5 211 2 5 686 703 332 38 17 chr12 13330121 13330357 -107927173 + B4A SINE B4 43 283 -9 5 686 228 214 0 0 chr12 13330406 13330462 -107927068 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 686 679 235 0 86 chr12 13330462 13330625 -107926905 - RSINE1 SINE B4 0 165 17 5 686 286 306 161 13 chr12 13332072 13332221 -107925309 - LTR41B LTR ERVL -587 171 1 5 686 496 312 70 61 chr12 13332313 13332542 -107924988 - MLT1A LTR MaLR -5 369 139 5 686 245 239 13 107 chr12 13332579 13332654 -107924876 - B1F1 SINE Alu -3 146 79 5 686 207 360 26 51 chr12 13333498 13333615 -107923915 + L2b LINE L2 3258 3371 -4 6 686 813 249 97 34 chr12 13334354 13334674 -107922856 + Lx7 LINE L1 6959 7298 -398 6 686 186 71 0 0 chr12 13334724 13334752 -107922778 + (T)n Simple_repeat Simple_repeat 1 28 0 6 686 259 317 0 0 chr12 13334793 13334894 -107922636 + Lx7 LINE L1 7578 7678 -18 6 686 222 37 0 0 chr12 13334897 13334924 -107922606 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 686 1128 283 24 5 chr12 13335761 13336141 -107921389 + L1M1 LINE L1 5418 5804 -496 6 686 670 233 102 75 chr12 13336171 13336357 -107921173 + B3A SINE B2 1 191 -4 6 686 514 281 23 0 chr12 13336357 13336485 -107921045 + B3 SINE B2 86 216 0 6 686 245 318 62 8 chr12 13336582 13336712 -107920818 + L1MA6 LINE L1 5916 6052 -248 6 686 454 266 92 58 chr12 13336842 13337082 -107920448 + RMER5 LTR ERV1 3 250 -284 6 686 219 338 14 0 chr12 13338314 13338385 -107919145 + PB1D9 SINE Alu 41 112 -8 6 686 258 163 22 0 chr12 13338837 13338889 -107918641 + L1M2 LINE L1 4864 4966 -1177 6 686 551 119 0 23 chr12 13338924 13339010 -107918520 + B1F1 SINE Alu 64 147 -2 6 686 2117 127 133 13 chr12 13340333 13340708 -107916822 - MTC LTR MaLR 0 421 2 6 686 314 282 61 81 chr12 13341064 13341311 -107916219 - L1MC5 LINE L1 -24 7937 7696 6 686 27 29 0 0 chr12 13341312 13341346 -107916184 + AT_rich Low_complexity Low_complexity 1 34 0 6 686 1097 66 66 0 chr12 13341351 13341488 -107916042 - B1_Mm SINE Alu 0 147 2 6 686 4391 73 15 2 chr12 13341488 13342034 -107915496 - L1_Mus3 LINE L1 -15 6623 6071 6 686 180 316 74 41 chr12 13342159 13342281 -107915249 + L2b LINE L2 3249 3374 -1 6 686 22 0 0 0 chr12 13342905 13342927 -107914603 + AT_rich Low_complexity Low_complexity 1 22 0 6 686 207 186 0 0 chr12 13343245 13343288 -107914242 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 686 909 193 37 59 chr12 13343370 13343890 -107913640 + RMER17C LTR ERVK 2 402 -8 6 686 810 169 43 71 chr12 13344224 13344434 -107913096 - Lx4B LINE L1 -57 7001 6798 6 686 23 33 0 0 chr12 13344466 13344496 -107913034 + AT_rich Low_complexity Low_complexity 1 30 0 6 686 333 280 18 149 chr12 13344503 13344671 -107912859 - B1F2 SINE Alu 0 149 4 6 686 882 143 0 0 chr12 13344933 13345080 -107912450 + (CCCCAG)n Simple_repeat Simple_repeat 4 150 0 6 686 557 274 58 21 chr12 13345754 13345944 -107911586 - B3A SINE B2 -1 197 1 6 686 5874 39 14 0 chr12 13346224 13346893 -107910637 - L1Md_F2 LINE L1 0 6582 5905 6 686 1529 207 139 16 chr12 13347232 13347605 -107909925 - MTD LTR MaLR 0 419 1 6 686 370 329 57 57 chr12 13348308 13348466 -107909064 - RMER30 DNA MER1_type -39 163 6 6 686 28 29 0 0 chr12 13348549 13348584 -107908946 + AT_rich Low_complexity Low_complexity 1 35 0 6 686 528 16 0 0 chr12 13348619 13348680 -107908850 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 686 531 262 41 0 chr12 13349268 13349390 -107908140 - B1F1 SINE Alu -10 139 13 6 686 445 224 180 23 chr12 13350158 13350286 -107907244 + RSINE1 SINE B4 3 150 -15 6 686 351 0 0 0 chr12 13350292 13350331 -107907199 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 686 184 352 0 18 chr12 13350445 13350500 -107907030 - L2b LINE L2 -211 3164 3111 6 686 356 214 43 43 chr12 13350642 13350735 -107906795 + B1F SINE Alu 6 98 -51 6 686 729 120 80 36 chr12 13351151 13351289 -107906241 + Lx LINE L1 6146 6289 -365 6 686 1419 101 50 46 chr12 13351289 13351528 -107906002 + Lx LINE L1 6414 6653 -1 6 686 7210 73 9 3 chr12 13351679 13352567 -107904963 + RLTR13B1 LTR ERVK 1 893 0 6 686 26 30 0 0 chr12 13353891 13353924 -107903606 + AT_rich Low_complexity Low_complexity 1 33 0 6 686 872 113 0 36 chr12 13353937 13354075 -107903455 - L1Md_F2 LINE L1 -19 6563 6431 6 686 4526 38 0 18 chr12 13354098 13354210 -107903320 - L1_Mm LINE L1 0 5883 5780 6 686 1355 20 0 0 chr12 13354210 13354357 -107903173 + B1_Mus2 SINE Alu 1 147 0 6 686 4526 38 0 18 chr12 13354357 13354787 -107902743 - L1_Mm LINE L1 -104 5779 5351 6 686 225 300 32 106 chr12 13356203 13356326 -107901204 - ORR1E LTR MaLR -5 354 241 6 686 460 294 15 60 chr12 13356368 13356502 -107901028 - ORR1E LTR MaLR -231 128 1 6 686 363 273 20 0 chr12 13356826 13356925 -107900605 - L2a LINE L2 -1 3425 3325 6 686 1246 208 22 26 chr12 13356925 13357196 -107900334 - MTE2b LTR MaLR 0 379 110 6 686 248 367 42 0 chr12 13357192 13357312 -107900218 - B1F SINE Alu -7 142 18 6 686 315 214 0 0 chr12 13357410 13357480 -107900050 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 686 181 310 49 81 chr12 13357481 13357604 -107899926 + MIRb SINE MIR 136 254 -14 6 686 292 320 20 49 chr12 13358980 13359082 -107898448 - RSINE1 SINE B4 -4 161 63 6 686 289 304 63 52 chr12 13359084 13359275 -107898255 - MER3 DNA MER1_type -16 193 1 6 686 7001 57 1 0 chr12 13359974 13360833 -107896697 + L1Md_F2 LINE L1 4726 5585 -298 6 686 8657 47 0 0 chr12 13360834 13361843 -107895687 + L1Md_F2 LINE L1 5587 6582 0 6 686 261 138 62 0 chr12 13362229 13362294 -107895236 + GA-rich Low_complexity Low_complexity 6 74 0 6 686 2473 190 70 4 chr12 13364199 13364716 -107892814 - Lx9 LINE L1 -584 7060 6510 6 686 314 234 240 8 chr12 13366939 13367064 -107890466 + RMER15 LTR ERVL 421 574 -1 6 686 816 11 0 0 chr12 13368221 13368314 -107889216 + (TTC)n Simple_repeat Simple_repeat 1 93 0 6 686 663 125 0 0 chr12 13368308 13368412 -107889118 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 6 686 1382 95 21 5 chr12 13368412 13368602 -107888928 - B2_Mm2 SINE B2 0 195 3 6 686 647 203 21 42 chr12 13368691 13368835 -107888695 + B1_Mur1 SINE Alu 2 142 -7 6 687 14866 130 24 7 chr12 13369574 13372741 -107884789 - Lx LINE L1 -3 6651 3424 6 687 4646 115 14 0 chr12 13372733 13373544 -107883986 - L1VL2 LINE L1 -2467 1148 324 6 687 21 0 0 0 chr12 13373566 13373587 -107883943 + AT_rich Low_complexity Low_complexity 1 21 0 6 687 336 409 32 4 chr12 13375158 13375406 -107882124 - L1M5 LINE L1 -1034 5112 4858 6 687 1200 100 94 0 chr12 13375614 13375784 -107881746 - B2_Mm1t SINE B2 -7 186 1 6 687 533 115 0 0 chr12 13375807 13375885 -107881645 - B2_Mm2 SINE B2 -41 154 77 6 687 318 68 0 0 chr12 13375886 13375930 -107881600 - B3 SINE B2 -172 44 1 6 687 252 314 93 19 chr12 13376688 13376850 -107880680 + MER2 DNA MER2_type 163 336 -9 6 687 264 305 17 95 chr12 13376918 13377034 -107880496 + PB1D9 SINE Alu 6 112 -8 6 687 8943 86 22 8 chr12 13377328 13378262 -107879268 - Lx3_Mus LINE L1 -142 6867 5913 6 687 261 0 0 0 chr12 13378262 13378291 -107879239 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 6 687 11177 70 6 8 chr12 13378291 13379789 -107877741 - Lx3_Mus LINE L1 -1097 5912 4420 6 687 226 196 0 21 chr12 13379764 13379811 -107877719 + L1_Mur1 LINE L1 3043 3088 -2798 6 687 7967 76 4 1 chr12 13379811 13380870 -107876660 + L1_Mur1 LINE L1 3317 4378 -1508 6 687 4035 72 25 15 chr12 13382483 13383004 -107874526 - L1_Mus2 LINE L1 0 6566 6041 6 687 310 274 14 93 chr12 13384506 13384652 -107872878 - B1F2 SINE Alu -3 147 15 6 687 309 26 0 0 chr12 13384666 13384704 -107872826 + (TATG)n Simple_repeat Simple_repeat 1 38 0 6 687 375 340 47 0 chr12 13384705 13384811 -107872719 - B1F SINE Alu -7 113 3 6 687 24 32 0 0 chr12 13385142 13385173 -107872357 + AT_rich Low_complexity Low_complexity 1 31 0 6 687 485 340 33 14 chr12 13385249 13385461 -107872069 + ID_B1 SINE B4 2 217 -7 6 687 3600 50 0 9 chr12 13385513 13385939 -107871591 - L1Md_F2 LINE L1 0 6582 6161 6 687 264 299 68 36 chr12 13386859 13387109 -107870421 - L1M5 LINE L1 -297 5882 5625 6 687 322 284 21 0 chr12 13389447 13389542 -107867988 + PB1 SINE Alu 24 120 -7 6 687 470 279 10 0 chr12 13389644 13389748 -107867782 - PB1D10 SINE Alu -10 107 3 6 687 328 311 55 39 chr12 13391056 13391183 -107866347 + RMER15-int LTR ERVL 512 640 -4359 6 687 267 31 0 0 chr12 13391251 13391283 -107866247 + (A)n Simple_repeat Simple_repeat 1 32 0 6 687 261 316 87 38 chr12 13391389 13391573 -107865957 + RMER15-int LTR ERVL 1345 1537 -3462 6 687 15226 58 5 0 chr12 13391636 13394210 -107863320 - L1_Mus1 LINE L1 0 6567 3983 6 687 5144 151 63 28 chr12 13394180 13396132 -107861398 - L1_Mus1 LINE L1 -3847 2036 98 6 687 1129 124 215 0 chr12 13397017 13397203 -107860327 + URR1A DNA MER1_type 1 226 0 6 687 250 333 88 29 chr12 13397334 13397470 -107860060 + B1F SINE Alu 1 144 -5 6 687 206 342 93 7 chr12 13398094 13398244 -107859286 + L2c LINE L2 2954 3116 -271 6 687 1216 68 0 0 chr12 13398319 13398467 -107859063 + B1_Mus1 SINE Alu 1 148 0 6 687 21 0 0 0 chr12 13399331 13399352 -107858178 + AT_rich Low_complexity Low_complexity 1 21 0 6 687 355 241 60 0 chr12 13399710 13399793 -107857737 - B1F1 SINE Alu -56 93 6 6 687 244 281 100 11 chr12 13399914 13400004 -107857526 - L1MB5 LINE L1 -8 6166 6069 6 687 1173 156 101 19 chr12 13401087 13401296 -107856234 - URR1A DNA MER1_type 0 226 1 6 687 2812 68 21 0 chr12 13401978 13402256 -107855274 + ORR1A1 LTR MaLR 1 278 -68 6 687 228 35 0 0 chr12 13402256 13402285 -107855245 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 687 2812 68 21 0 chr12 13402285 13402345 -107855185 + ORR1A1 LTR MaLR 279 344 -2 6 687 14455 53 29 1 chr12 13402345 13404088 -107853442 + ORR1A1-int LTR MaLR 1 1792 0 6 687 2430 96 39 0 chr12 13404088 13404362 -107853168 + ORR1A1 LTR MaLR 1 278 -68 6 687 230 0 33 0 chr12 13404362 13404392 -107853138 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 687 2430 96 39 0 chr12 13404392 13404450 -107853080 + ORR1A1 LTR MaLR 279 344 -2 6 687 582 326 33 101 chr12 13404612 13404919 -107852611 - B4A SINE B4 0 292 7 6 687 596 282 119 98 chr12 13405243 13405479 -107852051 + B4A SINE B4 48 288 -4 6 687 532 277 9 0 chr12 13405626 13405738 -107851792 - B3A SINE B2 -76 122 10 6 687 552 116 0 0 chr12 13405743 13405829 -107851701 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 6 687 8032 73 0 2 chr12 13406450 13407943 -107849587 + L1_Mus1 LINE L1 5078 6567 0 6 687 198 0 0 0 chr12 13407954 13407976 -107849554 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 6 687 2103 177 92 13 chr12 13407983 13408373 -107849157 + MTC LTR MaLR 1 421 0 7 687 26 64 0 0 chr12 13408590 13408637 -107848893 + AT_rich Low_complexity Low_complexity 1 47 0 7 687 42 36 0 0 chr12 13408787 13408843 -107848687 + AT_rich Low_complexity Low_complexity 1 56 0 7 687 2901 247 28 30 chr12 13409394 13410116 -107847414 - Lx6 LINE L1 0 7460 6741 7 687 242 88 0 0 chr12 13410116 13410150 -107847380 + (TCC)n Simple_repeat Simple_repeat 2 35 0 7 687 648 209 8 26 chr12 13410150 13410415 -107847115 + CT-rich Low_complexity Low_complexity 1 259 0 7 687 555 209 0 0 chr12 13410415 13410520 -107847010 - Lx6 LINE L1 -723 6737 6633 7 687 1168 129 0 46 chr12 13410520 13410715 -107846815 - Lx2 LINE L1 0 6997 6812 7 687 406 250 32 91 chr12 13410726 13410880 -107846650 - Lx9 LINE L1 -917 6727 6583 7 687 194 30 0 83 chr12 13411391 13411427 -107846103 + (T)n Simple_repeat Simple_repeat 1 33 0 7 687 1213 68 0 0 chr12 13411427 13411573 -107845957 - B1_Mm SINE Alu 0 147 2 7 687 206 136 23 0 chr12 13412878 13412922 -107844608 + CT-rich Low_complexity Low_complexity 2 46 0 7 687 22 80 0 0 chr12 13413155 13413205 -107844325 + AT_rich Low_complexity Low_complexity 1 50 0 7 687 900 135 220 5 chr12 13413497 13413683 -107843847 - URR1A DNA MER1_type 0 226 1 7 687 232 212 254 33 chr12 13414164 13414286 -107843244 + MIR SINE MIR 86 234 -28 7 687 363 229 55 37 chr12 13414600 13414703 -107842827 + PB1D9 SINE Alu 1 107 -13 7 687 552 30 0 0 chr12 13414703 13414769 -107842761 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 687 242 265 75 84 chr12 13414800 13414907 -107842623 - PB1D10 SINE Alu -11 106 1 7 687 185 309 128 35 chr12 13415442 13415583 -107841947 - MIRc SINE MIR -17 251 98 7 687 205 274 65 0 chr12 13415999 13416061 -107841469 + MIRc SINE MIR 2 67 -201 7 687 507 107 0 0 chr12 13416514 13416589 -107840941 + (TA)n Simple_repeat Simple_repeat 1 75 0 7 687 435 353 8 8 chr12 13416724 13416858 -107840672 - Tigger7 DNA MER2_type -2293 198 65 7 687 358 282 69 69 chr12 13419109 13419311 -107838219 - MER57E1 LTR ERV1 -2 370 169 7 687 346 129 28 14 chr12 13420580 13420651 -107836879 + (TATG)n Simple_repeat Simple_repeat 3 74 0 7 687 2083 152 3 65 chr12 13423225 13423576 -107833954 - ORR1A4 LTR MaLR 0 329 1 7 687 25 75 0 0 chr12 13424518 13424571 -107832959 + AT_rich Low_complexity Low_complexity 1 53 0 7 687 381 274 104 33 chr12 13425059 13425270 -107832260 - L1M4 LINE L1 -401 5777 5552 7 687 646 193 29 22 chr12 13425588 13425726 -107831804 - RLTR25B LTR ERVK 0 1028 890 7 687 1143 158 31 0 chr12 13426074 13426270 -107831260 - RLTR25B LTR ERVK -254 774 573 7 687 38729 30 0 0 chr12 13426277 13432723 -107824807 - L1Md_T LINE L1 0 6585 43 7 687 2582 166 8 76 chr12 13432724 13433252 -107824278 - RLTR25A LTR ERVK -444 659 168 7 687 2763 149 107 48 chr12 13433254 13433678 -107823852 + RMER1B Other Other 494 948 -118 7 687 3349 16 5 8 chr12 13433678 13434047 -107823483 - L1Md_F2 LINE L1 -3 6579 6212 7 687 2763 149 107 48 chr12 13434047 13434163 -107823367 + RMER1B Other Other 949 1066 0 7 687 243 0 0 0 chr12 13434255 13434282 -107823248 + (TTA)n Simple_repeat Simple_repeat 2 28 0 7 687 829 200 14 0 chr12 13434294 13434439 -107823091 - B1_Mus1 SINE Alu -1 147 1 7 687 247 318 45 18 chr12 13434739 13434851 -107822679 + L1M5 LINE L1 5546 5660 -513 7 687 343 312 49 14 chr12 13434892 13435035 -107822495 + B1F2 SINE Alu 1 148 -1 7 687 229 254 30 45 chr12 13435046 13435112 -107822418 + tRNA-Ala-GCY_ tRNA tRNA 4 68 -7 7 687 217 274 56 67 chr12 13435112 13435132 -107822398 + ID_B1 SINE B4 9 93 -131 7 687 414 255 198 0 chr12 13435369 13435475 -107822055 - B1F SINE Alu -5 144 18 7 687 324 0 0 0 chr12 13435535 13435571 -107821959 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 687 743 253 19 0 chr12 13435857 13436011 -107821519 + B3A SINE B2 1 157 -41 7 687 672 123 0 0 chr12 13436028 13436142 -107821388 + (CA)n Simple_repeat Simple_repeat 2 115 0 7 687 22 0 0 0 chr12 13436423 13436445 -107821085 + AT_rich Low_complexity Low_complexity 1 22 0 7 687 2051 164 75 14 chr12 13436500 13436914 -107820616 - Lx LINE L1 0 6654 6216 7 687 349 345 75 44 chr12 13437829 13438123 -107819407 - MLT1E2 LTR MaLR -174 453 151 7 687 4615 91 18 2 chr12 13438669 13439273 -107818257 - L1_Mus2 LINE L1 0 6566 5953 7 687 3490 39 10 22 chr12 13440382 13440798 -107816732 + IAPLTR2a LTR ERVK 1 411 0 7 687 1571 329 76 25 chr12 13440957 13441869 -107815661 + L1MA4 LINE L1 4007 4964 -1179 7 687 2000 101 38 44 chr12 13444241 13444583 -107812947 - Lx LINE L1 0 6654 6315 7 687 290 151 0 0 chr12 13444583 13444636 -107812894 - Lx LINE L1 -579 6075 6023 7 687 985 305 80 33 chr12 13444701 13445314 -107812216 + L1MA4 LINE L1 5254 5917 -383 7 687 180 0 0 0 chr12 13445590 13445610 -107811920 + (T)n Simple_repeat Simple_repeat 1 20 0 7 687 549 0 0 0 chr12 13445827 13445888 -107811642 + (TTTTC)n Simple_repeat Simple_repeat 3 63 0 7 687 7344 87 20 1 chr12 13445897 13446924 -107810606 - L1_Mus3 LINE L1 -47 6591 5544 7 687 724 170 13 0 chr12 13447193 13447352 -107810178 + CT-rich Low_complexity Low_complexity 1 161 0 7 687 24 0 0 0 chr12 13449181 13449205 -107808325 + AT_rich Low_complexity Low_complexity 1 24 0 7 687 210 286 65 21 chr12 13449205 13449298 -107808232 - RSINE1 SINE B4 -33 132 36 7 687 267 218 49 37 chr12 13449361 13449442 -107808088 - MLT1J LTR MaLR -204 308 227 7 687 576 70 0 0 chr12 13449876 13449962 -107807568 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 687 24 0 0 0 chr12 13451092 13451116 -107806414 + AT_rich Low_complexity Low_complexity 1 24 0 7 687 28 29 0 0 chr12 13451902 13451937 -107805593 + AT_rich Low_complexity Low_complexity 1 35 0 7 687 1769 96 58 0 chr12 13451937 13452218 -107805312 - Lx3_Mus LINE L1 -7 6974 6656 7 687 1068 77 7 0 chr12 13452218 13452361 -107805169 - L1_Mur1 LINE L1 -827 5059 4916 7 687 376 324 76 27 chr12 13453543 13453768 -107803762 + MER46C DNA MER2_type 13 248 -90 7 687 433 336 84 19 chr12 13454003 13454324 -107803206 - MER74A LTR ERVL -138 420 79 7 687 234 128 0 0 chr12 13454562 13454601 -107802929 + (CATA)n Simple_repeat Simple_repeat 2 40 0 7 687 180 0 0 0 chr12 13455200 13455220 -107802310 + (T)n Simple_repeat Simple_repeat 1 20 0 7 687 369 0 0 0 chr12 13455353 13455394 -107802136 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 687 1136 0 28 0 chr12 13456206 13456350 -107801180 + (CA)n Simple_repeat Simple_repeat 2 149 0 7 687 631 263 42 8 chr12 13456622 13456881 -107800649 - Lx8 LINE L1 -1570 5903 5629 7 687 246 62 0 0 chr12 13457219 13457251 -107800279 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 7 687 6387 176 48 5 chr12 13457254 13458647 -107798883 - Lx4B LINE L1 -12 7046 5504 7 687 825 224 59 15 chr12 13458657 13458861 -107798669 - B3 SINE B2 -3 213 1 7 687 340 326 11 59 chr12 13459355 13459541 -107797989 - Lx8 LINE L1 -118 7355 7179 7 687 806 214 108 41 chr12 13459554 13459822 -107797708 - Lx8 LINE L1 -454 7019 6734 7 687 723 211 50 116 chr12 13460745 13461003 -107796527 - MTE2a LTR MaLR 0 379 139 7 687 1131 41 14 7 chr12 13462818 13462964 -107794566 - B1_Mus2 SINE Alu 0 147 1 7 687 235 304 21 52 chr12 13463363 13463460 -107794070 + MTEb LTR MaLR 254 347 -32 7 687 1234 55 0 0 chr12 13463484 13463630 -107793900 - B1_Mm SINE Alu 0 147 2 7 687 1056 212 183 0 chr12 13463630 13463941 -107793589 - ORR1D1 LTR MaLR -6 368 1 7 687 591 303 59 55 chr12 13464482 13464619 -107792911 - MTE-int LTR MaLR -5 1575 1437 7 687 5269 76 40 4 chr12 13464619 13465320 -107792210 - L1_Mus2 LINE L1 -1 6565 5840 7 687 591 303 59 55 chr12 13465320 13465489 -107792041 - MTE-int LTR MaLR -144 1436 1268 7 687 414 317 61 133 chr12 13465586 13465949 -107791581 - MTEa LTR MaLR -46 333 1 7 687 613 267 39 92 chr12 13466155 13466361 -107791169 + B3A SINE B2 4 198 0 7 687 182 346 25 13 chr12 13467293 13467372 -107790158 + L2b LINE L2 3285 3364 -11 7 687 752 245 151 40 chr12 13467553 13467851 -107789679 - ORR1D2 LTR MaLR 0 370 40 7 687 651 125 0 0 chr12 13467912 13468016 -107789514 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 687 1439 71 16 0 chr12 13471962 13472146 -107785384 + B2_Mm2 SINE B2 2 188 -7 7 687 463 330 173 25 chr12 13472710 13473278 -107784252 + Lx8 LINE L1 6826 7473 0 7 687 238 44 67 0 chr12 13473635 13473664 -107783866 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 7 687 460 121 319 0 chr12 13473664 13473755 -107783775 - PB1D9 SINE Alu 0 120 1 7 687 238 44 67 0 chr12 13473755 13473770 -107783760 + (TTTTG)n Simple_repeat Simple_repeat 3 17 0 7 687 191 317 47 35 chr12 13473862 13473947 -107783583 - MIRc SINE MIR -98 164 79 7 687 1136 251 70 3 chr12 13474474 13474774 -107782756 - MTEa LTR MaLR -7 372 53 7 687 195 100 0 0 chr12 13478868 13478898 -107778632 + (T)n Simple_repeat Simple_repeat 1 30 0 7 687 1132 62 21 0 chr12 13478901 13479046 -107778484 - B1_Mus1 SINE Alu 0 148 1 7 687 714 283 46 31 chr12 13479181 13479440 -107778090 + B4 SINE B4 2 264 -28 7 687 21 0 0 0 chr12 13480340 13480361 -107777169 + AT_rich Low_complexity Low_complexity 1 21 0 7 687 456 312 107 5 chr12 13480542 13480729 -107776801 - MER20 DNA MER1_type -13 206 1 7 687 2103 167 31 13 chr12 13482579 13482968 -107774562 + MTC LTR MaLR 22 417 -4 7 687 216 0 0 0 chr12 13482969 13482993 -107774537 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 7 687 5197 194 83 21 chr12 13486564 13488040 -107769490 - Lx2B LINE L1 -7 6993 5433 7 687 299 266 115 0 chr12 13488891 13489004 -107768526 + RSINE1 SINE B4 3 128 -37 7 687 459 0 0 0 chr12 13489052 13489103 -107768427 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 687 800 207 89 20 chr12 13489801 13490003 -107767527 + B3 SINE B2 1 216 0 8 687 1098 71 0 0 chr12 13492666 13492878 -107764652 + (TG)n Simple_repeat Simple_repeat 1 212 0 8 687 329 292 30 37 chr12 13493782 13493917 -107763613 - RMER15 LTR ERVL -46 529 396 8 687 233 247 0 170 chr12 13493899 13494011 -107763519 - RMER15 LTR ERVL -136 439 347 8 687 263 250 139 0 chr12 13494075 13494183 -107763347 - Charlie1a DNA MER1_type -303 1152 1030 8 687 451 309 96 43 chr12 13494293 13494594 -107762936 - Charlie1a DNA MER1_type -643 812 496 8 687 459 92 0 0 chr12 13494597 13494662 -107762868 + (TCCC)n Simple_repeat Simple_repeat 1 65 0 8 687 989 146 0 11 chr12 13494662 13494842 -107762688 + CT-rich Low_complexity Low_complexity 3 180 0 8 687 12126 100 8 2 chr12 13494863 13497313 -107760217 - L1_Mus1 LINE L1 -9 6558 4090 8 687 880 65 0 0 chr12 13497314 13497421 -107760109 - U6 snRNA snRNA 0 107 1 8 687 256 369 174 9 chr12 13497519 13497858 -107759672 - Charlie1a DNA MER1_type -1060 395 1 8 687 188 312 210 0 chr12 13498824 13498962 -107758568 - MIRb SINE MIR -9 259 93 8 687 428 319 54 16 chr12 13499376 13499561 -107757969 - MLT1D LTR MaLR -104 401 210 8 687 21 0 0 0 chr12 13499731 13499752 -107757778 + AT_rich Low_complexity Low_complexity 1 21 0 8 688 255 250 17 0 chr12 13500802 13500862 -107756668 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1 688 417 321 24 54 chr12 13500863 13501031 -107756499 - RSINE1 SINE B4 0 165 3 2 688 216 86 0 0 chr12 13501174 13501209 -107756321 + (T)n Simple_repeat Simple_repeat 1 35 0 3 688 197 366 92 26 chr12 13501845 13502117 -107755413 - L2a LINE L2 -32 3394 3105 4 688 531 276 42 42 chr12 13502448 13502686 -107754844 - MER44A DNA MER2_type -99 240 3 5 688 226 275 0 55 chr12 13503484 13503557 -107753973 - ID4_ SINE ID -13 70 2 6 688 302 328 87 8 chr12 13503571 13503697 -107753833 - B1F1 SINE Alu -2 147 12 7 688 227 346 56 63 chr12 13503697 13503713 -107753817 - ID_B1 SINE B4 -2 222 82 8 688 1204 41 7 0 chr12 13504578 13504723 -107752807 + B1_Mus2 SINE Alu 1 146 -1 9 688 900 242 35 70 chr12 13505035 13505320 -107752210 + Lx7 LINE L1 7093 7367 -329 1 688 1308 226 18 57 chr12 13505318 13505703 -107751827 + Lx7 LINE L1 7326 7695 -1 1 688 253 312 20 65 chr12 13508498 13508697 -107748833 + MER112 DNA MER1_type 7 196 -65 1 688 343 208 236 12 chr12 13509877 13510038 -107747492 - MER67B LTR ERV1 -463 198 2 1 688 945 60 0 0 chr12 13510493 13510626 -107746904 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 688 208 321 12 0 chr12 13513437 13513521 -107744009 - L2 LINE L2 -541 2878 2794 1 688 746 260 39 10 chr12 13513584 13513790 -107743740 + RLTR18B LTR ERVK 1 212 -404 1 688 7278 46 1 0 chr12 13513798 13514667 -107742863 - L1Md_T LINE L1 0 6582 5713 1 688 1009 0 0 0 chr12 13514667 13514774 -107742756 - U6 snRNA snRNA 0 107 1 1 688 832 236 103 77 chr12 13514779 13515091 -107742439 + RLTR18B LTR ERVK 193 512 0 1 688 417 322 7 27 chr12 13515111 13515258 -107742272 + B4A SINE B4 86 229 -63 1 688 1197 61 0 0 chr12 13515259 13515406 -107742124 + B1_Mm SINE Alu 1 147 0 2 688 230 156 0 0 chr12 13515406 13515451 -107742079 + A-rich Low_complexity Low_complexity 2 46 0 2 688 244 325 124 23 chr12 13516298 13516427 -107741103 - MLT1J1-int LTR MaLR -793 594 453 2 688 291 180 41 58 chr12 13516790 13516961 -107740569 + (TA)n Simple_repeat Simple_repeat 2 169 0 2 688 206 187 43 90 chr12 13516921 13517109 -107740421 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 2 688 202 42 0 0 chr12 13517158 13517182 -107740348 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 688 454 143 0 21 chr12 13517182 13517275 -107740255 + (TA)n Simple_repeat Simple_repeat 1 91 0 2 688 290 330 164 38 chr12 13517425 13517718 -107739812 - MLT1J1 LTR MaLR -52 392 63 2 688 199 232 101 34 chr12 13517794 13517883 -107739647 - L2 LINE L2 -703 2716 2622 1 688 293 229 43 0 chr12 13518926 13518996 -107738534 - PB1D10 SINE Alu -10 107 35 2 688 729 216 174 0 chr12 13519165 13519355 -107738175 - URR1B DNA MER1_type 0 225 3 2 688 22 0 0 0 chr12 13521044 13521066 -107736464 + AT_rich Low_complexity Low_complexity 1 22 0 2 688 237 33 0 0 chr12 13521087 13521117 -107736413 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 688 757 275 26 5 chr12 13521119 13521313 -107736217 - B3 SINE B2 -18 198 1 3 688 1244 112 0 11 chr12 13521388 13521568 -107735962 - B2_Mm2 SINE B2 -16 179 2 3 688 395 209 9 0 chr12 13521679 13521794 -107735736 + (TG)n Simple_repeat Simple_repeat 1 116 0 3 688 344 327 9 0 chr12 13521794 13521904 -107735626 - PB1D10 SINE Alu -6 111 1 3 688 359 340 0 0 chr12 13522213 13522313 -107735217 + RSINE1 SINE B4 66 165 0 3 688 6469 116 14 67 chr12 13522531 13523602 -107733928 + Lx LINE L1 5630 6645 -9 3 688 306 0 0 0 chr12 13523602 13523636 -107733894 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 688 1177 48 7 0 chr12 13523636 13523781 -107733749 + B1_Mm SINE Alu 2 147 0 3 688 21 36 0 0 chr12 13524151 13524179 -107733351 + AT_rich Low_complexity Low_complexity 1 28 0 3 688 2762 77 3 3 chr12 13524185 13524552 -107732978 - L1_Mus2 LINE L1 0 6566 6200 4 688 888 92 0 0 chr12 13524552 13524672 -107732858 + L1_Mm LINE L1 5101 5220 -663 4 688 615 194 40 8 chr12 13524672 13524797 -107732733 + B1_Mur2 SINE Alu 14 142 -7 4 688 277 302 48 36 chr12 13525181 13525349 -107732181 + MIR SINE MIR 34 203 -59 4 688 1659 194 41 22 chr12 13527636 13527999 -107729531 - ORR1D1 LTR MaLR 0 374 5 4 688 691 168 51 0 chr12 13528003 13528140 -107729390 - ORR1D1-int LTR MaLR 0 1370 1227 4 688 744 197 20 7 chr12 13528136 13528289 -107729241 - ORR1D1 LTR MaLR -219 155 1 4 688 1437 80 16 0 chr12 13530139 13530326 -107727204 - B2_Mm2 SINE B2 -4 191 2 4 688 421 282 7 30 chr12 13530375 13530510 -107727020 - ID_B1 SINE B4 0 224 93 4 688 2322 236 61 47 chr12 13531513 13532220 -107725310 - Lx9 LINE L1 -16 7628 6912 4 688 1138 34 0 76 chr12 13532223 13532381 -107725149 + B1_Mm SINE Alu 2 147 0 4 688 415 173 0 14 chr12 13532428 13532569 -107724961 + (CAGA)n Simple_repeat Simple_repeat 2 140 0 4 688 1143 329 98 27 chr12 13532582 13533285 -107724245 - Lx8 LINE L1 -36 7437 6685 5 688 1267 319 136 11 chr12 13533275 13534077 -107723453 + Lx8 LINE L1 4979 5880 0 5 688 989 284 124 6 chr12 13534069 13534399 -107723131 + Lx8 LINE L1 6276 6644 -829 5 688 207 0 0 0 chr12 13534476 13534499 -107723031 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 688 1188 35 35 0 chr12 13534499 13534672 -107722858 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 688 439 150 38 0 chr12 13534975 13535055 -107722475 + MTC LTR MaLR 1 83 -338 5 688 2309 96 6 6 chr12 13535055 13535381 -107722149 + Lx3_Mus LINE L1 6668 6993 -16 5 688 782 188 6 0 chr12 13535381 13535546 -107721984 + GA-rich Low_complexity Low_complexity 3 168 0 5 688 1906 179 9 3 chr12 13535549 13535886 -107721644 + MTC LTR MaLR 83 421 0 5 688 4729 105 72 8 chr12 13536503 13537241 -107720289 - Lx2 LINE L1 -69 6928 6144 5 688 255 305 80 51 chr12 13538011 13538187 -107719343 - Lx8 LINE L1 -1 7472 7292 5 688 675 177 108 18 chr12 13538203 13538370 -107719160 - Lx8 LINE L1 -341 7132 6951 5 688 204 286 41 83 chr12 13538530 13538675 -107718855 - MIRb SINE MIR -11 257 119 5 688 252 296 0 58 chr12 13539468 13539572 -107717958 + (TATG)n Simple_repeat Simple_repeat 3 100 0 6 688 521 235 0 0 chr12 13539762 13539881 -107717649 - B3A SINE B2 -79 119 1 6 688 596 227 146 10 chr12 13539881 13540083 -107717447 - B4A SINE B4 -62 230 1 6 688 243 0 0 0 chr12 13540300 13540327 -107717203 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 688 630 143 0 0 chr12 13541859 13541964 -107715566 + (TCCC)n Simple_repeat Simple_repeat 4 108 0 6 688 454 287 123 14 chr12 13542057 13542293 -107715237 + MTD LTR MaLR 95 383 -36 6 688 237 214 0 51 chr12 13544263 13544322 -107713208 + L2a LINE L2 3276 3331 -95 6 688 1095 274 144 4 chr12 13546445 13546965 -107710565 - L1MA4 LINE L1 -400 5900 5308 6 688 778 277 117 21 chr12 13547419 13547795 -107709735 - L1MC4a LINE L1 -216 7666 7255 6 688 205 88 0 29 chr12 13547798 13547833 -107709697 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6 688 306 303 191 50 chr12 13547922 13548735 -107708795 - L1MC4a LINE L1 -813 7069 6143 6 688 348 43 0 0 chr12 13549257 13549303 -107708227 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 688 24 53 0 0 chr12 13549655 13549693 -107707837 + AT_rich Low_complexity Low_complexity 1 38 0 7 688 225 0 0 0 chr12 13550073 13550098 -107707432 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 7 688 404 314 113 14 chr12 13550763 13550976 -107706554 + B4A SINE B4 13 246 -46 7 688 303 71 0 0 chr12 13551338 13551380 -107706150 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 688 1583 136 6 80 chr12 13551419 13551731 -107705799 + ORR1A4 LTR MaLR 1 289 -40 7 688 3209 118 34 2 chr12 13551731 13552225 -107705305 - L1_Mus3 LINE L1 -915 4968 4459 7 688 7168 78 70 4 chr12 13552217 13553777 -107703753 + L1_Mus3 LINE L1 4976 6636 -2 7 688 365 91 18 0 chr12 13553777 13553832 -107703698 + ORR1A4 LTR MaLR 274 329 0 7 688 237 291 37 25 chr12 13554352 13554433 -107703097 + B4A SINE B4 2 83 -209 7 688 441 272 107 26 chr12 13554669 13555087 -107702443 + LTR40b LTR ERVL 1 519 0 7 688 33138 73 4 2 chr12 13556062 13561143 -107696387 - L1Md_F2 LINE L1 -12 6570 1482 7 688 4256 145 23 4 chr12 13561692 13562378 -107695152 - Lx LINE L1 0 6654 5956 8 688 3804 47 0 0 chr12 13562375 13562827 -107694703 - L1_Mus1 LINE L1 0 6567 6116 8 688 201 277 62 0 chr12 13563208 13563273 -107694257 - MIRm SINE MIR -114 162 94 8 688 972 283 84 0 chr12 13565846 13566143 -107691387 - Lx8 LINE L1 0 7473 7152 8 688 356 266 131 11 chr12 13566374 13566549 -107690981 - MIRb SINE MIR -13 255 60 8 688 269 183 33 16 chr12 13567106 13567167 -107690363 - PB1D10 SINE Alu -1 116 55 8 688 252 0 0 0 chr12 13570911 13570939 -107686591 + (T)n Simple_repeat Simple_repeat 1 28 0 8 688 180 0 0 0 chr12 13571168 13571188 -107686342 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 8 688 789 201 281 26 chr12 13571193 13571495 -107686035 + MTC LTR MaLR 29 407 -14 8 688 914 252 59 7 chr12 13571837 13572125 -107685405 - RMER15 LTR ERVL 0 575 273 8 688 195 211 58 0 chr12 13573230 13573282 -107684248 - L2b LINE L2 -18 3357 3303 9 688 25287 148 20 5 chr12 13575062 13581324 -107676206 - L1Md_F3 LINE L1 0 6584 232 9 688 293 299 129 6 chr12 13581360 13581538 -107675992 - L1MD2 LINE L1 -18 6341 6142 9 688 273 257 14 0 chr12 13581638 13581708 -107675822 - L1MD2 LINE L1 -373 5986 5916 9 688 3050 107 14 2 chr12 13584264 13584696 -107672834 - RLTR9B LTR ERVK 0 437 1 9 688 732 237 0 0 chr12 13585635 13585774 -107671756 + B1_Mur4 SINE Alu 1 139 -11 9 688 527 43 14 0 chr12 13585807 13585877 -107671653 + (GA)n Simple_repeat Simple_repeat 2 72 0 9 688 1082 79 0 28 chr12 13586562 13586705 -107670825 + B1_Mus1 SINE Alu 1 139 -9 9 688 231 88 0 0 chr12 13586705 13586739 -107670791 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 688 807 168 11 21 chr12 13587094 13587275 -107670255 - B3 SINE B2 -19 176 2 9 688 383 216 94 24 chr12 13587275 13587394 -107670136 - B1F SINE Alu -2 115 1 9 688 493 239 0 60 chr12 13588662 13588778 -107668752 + PB1D7 SINE Alu 7 115 -5 1 688 279 291 114 52 chr12 13588778 13588818 -107668712 + B4 SINE B4 114 258 -34 1 688 216 338 0 15 chr12 13589774 13589840 -107667690 + MIRb SINE MIR 22 86 -182 1 688 1586 141 196 0 chr12 13591480 13591792 -107665738 + RLTR25B LTR ERVK 655 1027 -1 1 688 808 229 126 81 chr12 13591802 13592111 -107665419 - MTE2a LTR MaLR -56 323 1 1 688 522 43 0 0 chr12 13593908 13593977 -107663553 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 688 366 275 106 35 chr12 13593985 13594098 -107663432 - RSINE1 SINE B4 -43 122 2 1 688 188 270 32 0 chr12 13594220 13594283 -107663247 - MIRb SINE MIR -194 74 10 1 688 197 185 0 36 chr12 13595350 13595406 -107662124 + (TATG)n Simple_repeat Simple_repeat 4 57 0 1 688 903 248 61 18 chr12 13595406 13595735 -107661795 - L1MB2 LINE L1 -36 6135 5793 1 688 442 308 5 71 chr12 13596863 13597059 -107660471 - B3A SINE B2 -11 187 5 1 688 996 246 136 43 chr12 13597207 13597307 -107660223 - MTE2b LTR MaLR -2 377 269 1 688 2034 148 42 6 chr12 13597307 13597633 -107659897 - ORR1B2 LTR MaLR 0 367 32 1 688 501 17 0 0 chr12 13597633 13597691 -107659839 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 688 2034 148 42 6 chr12 13597691 13597718 -107659812 - ORR1B2 LTR MaLR -336 31 2 1 688 996 246 136 43 chr12 13597718 13597962 -107659568 - MTE2b LTR MaLR -111 268 1 1 688 284 290 2 31 chr12 13598532 13598628 -107658902 - MIRb SINE MIR -65 203 103 1 688 1696 46 0 0 chr12 13598754 13598950 -107658580 + L1Md_F3 LINE L1 5390 5585 -298 1 688 8583 24 3 5 chr12 13598951 13599950 -107657580 + L1Md_F3 LINE L1 5587 6583 -1 1 688 3678 198 65 38 chr12 13600433 13600833 -107656697 + RMER17B LTR ERVK 1 439 -519 1 688 645 49 0 0 chr12 13600833 13600914 -107656616 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 688 3678 198 65 38 chr12 13600914 13601380 -107656150 + RMER17B LTR ERVK 440 890 -68 1 688 377 280 87 142 chr12 13602366 13602620 -107654910 - B4 SINE B4 0 292 53 1 688 441 103 0 0 chr12 13602702 13602770 -107654760 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 688 657 262 12 112 chr12 13602962 13603203 -107654327 + MTEb LTR MaLR 2 218 -161 1 688 295 208 62 46 chr12 13603207 13603321 -107654209 - Lx6 LINE L1 -43 7417 7302 1 688 3833 209 24 15 chr12 13603306 13604022 -107653508 + Lx5 LINE L1 6194 6915 -135 1 688 437 209 78 39 chr12 13604022 13604176 -107653354 + MTEb LTR MaLR 194 353 -26 1 688 713 200 30 0 chr12 13604467 13604602 -107652928 + B1_Mur2 SINE Alu 5 143 -6 1 688 423 56 0 0 chr12 13604604 13604658 -107652872 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 1 688 628 200 8 28 chr12 13604662 13604921 -107652609 + GA-rich Low_complexity Low_complexity 1 253 0 1 688 416 283 150 7 chr12 13604931 13605084 -107652446 + MLT1A0 LTR MaLR 72 246 -119 1 688 1392 122 279 34 chr12 13606053 13606315 -107651215 - ORR1A3 LTR MaLR 0 326 1 1 688 1007 224 96 11 chr12 13606471 13606784 -107650746 - ORR1C1 LTR MaLR -14 356 1 1 688 228 312 71 27 chr12 13607009 13607121 -107650409 + MLT1A0 LTR MaLR 174 290 -75 1 688 486 333 18 18 chr12 13607313 13607481 -107650049 + B4 SINE B4 10 177 -115 1 688 207 0 0 0 chr12 13607500 13607523 -107650007 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 688 1450 161 98 23 chr12 13608302 13608608 -107648922 + ORR1B2 LTR MaLR 1 329 -38 1 688 1248 97 17 11 chr12 13608621 13608798 -107648732 - B2_Mm2 SINE B2 -14 181 4 1 688 423 0 0 0 chr12 13608821 13608868 -107648662 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 688 1246 50 0 0 chr12 13608868 13609027 -107648503 - B2_Mm2 SINE B2 -36 159 1 1 688 329 222 56 0 chr12 13609027 13609091 -107648439 + ORR1B2 LTR MaLR 292 359 -8 1 688 194 252 192 10 chr12 13609339 13609443 -107648087 - L3 LINE CR1 -185 4304 4182 1 688 236 0 88 0 chr12 13609639 13609673 -107647857 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 1 688 649 196 5 27 chr12 13609795 13609979 -107647551 + CT-rich Low_complexity Low_complexity 1 180 0 1 688 281 189 0 54 chr12 13610007 13610063 -107647467 - ID4 SINE ID -30 53 1 1 688 337 246 60 17 chr12 13610072 13610188 -107647342 - B1F SINE Alu 0 149 29 1 688 277 284 31 47 chr12 13610188 13610201 -107647329 - ID_B1 SINE B4 0 224 98 1 688 940 241 151 50 chr12 13611262 13611581 -107645949 - ORR1E LTR MaLR -8 351 1 1 688 270 266 38 0 chr12 13611775 13611854 -107645676 - MIR SINE MIR -69 193 112 1 688 439 236 0 0 chr12 13612558 13612647 -107644883 - Tigger9a DNA Tigger -3 729 641 1 688 273 57 0 0 chr12 13612667 13612702 -107644828 + (A)n Simple_repeat Simple_repeat 1 35 0 1 688 1608 164 62 34 chr12 13613224 13613545 -107643985 - ORR1D1 LTR MaLR -44 330 1 1 688 3016 55 39 8 chr12 13614113 13614497 -107643033 + MTA_Mm LTR MaLR 1 396 0 1 688 810 91 202 55 chr12 13615675 13615838 -107641692 - B2_Mm1a SINE B2 -5 188 2 1 688 336 193 0 12 chr12 13617733 13617774 -107639756 + polypurine Low_complexity Low_complexity 1 41 0 1 688 228 86 0 0 chr12 13617774 13617809 -107639721 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 688 336 193 0 12 chr12 13617809 13617851 -107639679 + polypurine Low_complexity Low_complexity 42 82 0 1 688 612 133 22 44 chr12 13617851 13618032 -107639498 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 1 688 228 260 19 74 chr12 13618179 13618287 -107639243 + (CAGAGA)n Simple_repeat Simple_repeat 4 105 0 1 688 283 269 107 53 chr12 13618769 13618938 -107638592 - MIRc SINE MIR -2 266 89 1 688 441 54 0 0 chr12 13619500 13619556 -107637974 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 688 405 0 0 0 chr12 13619728 13619773 -107637757 + (CAAG)n Simple_repeat Simple_repeat 1 45 0 1 688 2408 126 46 15 chr12 13621840 13622234 -107635296 + Lx3C LINE L1 6562 6967 -9 1 688 438 53 0 0 chr12 13622318 13622375 -107635155 + (GAAAA)n Simple_repeat Simple_repeat 4 60 0 1 688 513 287 80 55 chr12 13623079 13623404 -107634126 - MLT1A0 LTR MaLR -10 355 23 1 688 291 28 0 0 chr12 13624494 13624530 -107633000 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 688 459 0 0 0 chr12 13624530 13624580 -107632950 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 688 303 238 25 0 chr12 13624586 13624666 -107632864 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 688 367 230 7 7 chr12 13624682 13624822 -107632708 + (TG)n Simple_repeat Simple_repeat 1 140 0 1 688 383 216 0 13 chr12 13624890 13624965 -107632565 - ID4 SINE ID -8 75 2 1 688 1224 290 68 46 chr12 13625210 13625842 -107631688 - L1MC1 LINE L1 -87 6246 5601 1 688 579 85 0 0 chr12 13625847 13625929 -107631601 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 688 309 279 20 79 chr12 13626035 13626136 -107631394 - PB1D10 SINE Alu -5 112 18 1 688 647 300 68 39 chr12 13626254 13626535 -107630995 - B4A SINE B4 -2 290 2 1 688 550 221 10 0 chr12 13627002 13627106 -107630424 + URR1B DNA MER1_type 1 105 -120 1 688 824 0 0 97 chr12 13627108 13627303 -107630227 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1 688 188 207 36 24 chr12 13627309 13627332 -107630198 + polypyrimidine Low_complexity Low_complexity 63 87 0 1 688 812 6 0 97 chr12 13627332 13627528 -107630002 + (TTC)n Simple_repeat Simple_repeat 1 177 0 1 688 188 207 36 24 chr12 13627528 13627588 -107629942 + CT-rich Low_complexity Low_complexity 4 62 0 1 688 916 16 89 0 chr12 13627579 13627952 -107629578 + (TTCC)n Simple_repeat Simple_repeat 1 406 0 1 688 1094 71 0 0 chr12 13627975 13628116 -107629414 - B1_Mus1 SINE Alu -6 142 2 1 688 243 157 0 0 chr12 13628117 13628168 -107629362 + URR1B DNA MER1_type 93 143 -82 1 688 560 104 69 39 chr12 13628168 13628298 -107629232 + RMER17B LTR ERVK 330 463 -495 1 688 490 160 11 0 chr12 13628330 13628424 -107629106 + URR1B DNA MER1_type 131 225 0 1 688 985 275 64 47 chr12 13628472 13628880 -107628650 + L1MB5 LINE L1 5711 6125 -49 1 10 1020 218 187 17 chr12 13631234 13631523 -107626007 - MTEb LTR MaLR -38 341 4 1 689 220 214 28 14 chr12 13632411 13632427 -107625103 + polypyrimidine Low_complexity Low_complexity 57 72 0 1 689 243 0 0 0 chr12 13632427 13632454 -107625076 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 689 220 214 28 14 chr12 13632454 13632508 -107625022 + CT-rich Low_complexity Low_complexity 2 56 0 1 689 662 278 132 7 chr12 13632571 13632981 -107624549 - Charlie4a DNA MER1_type -20 488 28 1 689 899 170 301 8 chr12 13635323 13635576 -107621954 - MTEb LTR MaLR 0 327 1 1 689 968 242 146 20 chr12 13636641 13637005 -107620525 + MTD LTR MaLR 9 405 -14 1 689 305 309 9 35 chr12 13637178 13637292 -107620238 - RSINE1 SINE B4 -52 113 3 1 689 23 0 0 0 chr12 13637846 13637869 -107619661 + AT_rich Low_complexity Low_complexity 1 23 0 1 689 3462 28 5 0 chr12 13637878 13638272 -107619258 - MTA_Mm LTR MaLR 0 396 1 1 689 9007 47 9 0 chr12 13638272 13639360 -107618170 - MTA_Mm-int LTR MaLR 0 1098 1 1 689 3388 23 8 10 chr12 13639360 13639757 -107617773 - MTA_Mm LTR MaLR 0 396 1 1 689 1159 291 102 48 chr12 13639915 13640565 -107616965 + Lx9 LINE L1 6960 7644 0 1 689 329 0 0 24 chr12 13642315 13642357 -107615173 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 689 681 276 60 52 chr12 13642443 13642676 -107614854 + B4A SINE B4 46 280 -12 1 689 30 27 0 0 chr12 13642717 13642754 -107614776 + AT_rich Low_complexity Low_complexity 1 37 0 1 689 449 256 79 26 chr12 13642763 13642952 -107614578 + L1ME1 LINE L1 5586 5784 -395 1 689 345 295 241 5 chr12 13642952 13643143 -107614387 + Tigger5 DNA MER2_type 2 237 -2169 1 689 472 287 7 44 chr12 13643325 13643460 -107614070 + RSINE1 SINE B4 23 152 -13 1 689 225 0 0 0 chr12 13643464 13643489 -107614041 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 689 233 268 22 44 chr12 13643520 13643610 -107613920 + L1ME1 LINE L1 5859 5946 -233 1 689 459 100 0 0 chr12 13643677 13643747 -107613783 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 689 665 306 15 25 chr12 13643811 13644009 -107613521 - B4A SINE B4 -95 197 2 1 689 214 189 0 54 chr12 13644087 13644143 -107613387 + (TATG)n Simple_repeat Simple_repeat 3 55 0 1 689 608 279 62 26 chr12 13644176 13644371 -107613159 + B3 SINE B2 14 215 -1 1 689 290 345 86 44 chr12 13644607 13644922 -107612608 - MLT1B LTR MaLR -4 386 59 1 689 416 252 10 20 chr12 13644944 13645045 -107612485 - PB1D10 SINE Alu -12 105 6 2 689 234 303 0 0 chr12 13645215 13645281 -107612249 + LTR16C LTR ERVL 424 489 0 2 689 188 217 0 0 chr12 13646331 13646377 -107611153 + L3 LINE CR1 3528 3573 -916 2 689 781 286 122 31 chr12 13646663 13646857 -107610673 + Lx9 LINE L1 7151 7342 -302 2 689 222 37 0 0 chr12 13646857 13646884 -107610646 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 689 781 286 122 31 chr12 13646884 13647140 -107610390 + Lx9 LINE L1 7343 7641 -3 2 689 431 277 10 0 chr12 13647743 13647844 -107609686 - ID_B1 SINE B4 -110 114 13 2 689 1967 257 95 38 chr12 13647872 13648791 -107608739 - Charlie7 DNA MER1_type -65 2547 1577 2 689 336 48 0 0 chr12 13648838 13648880 -107608650 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 689 249 234 39 0 chr12 13649165 13649242 -107608288 - RMER15 LTR ERVL -492 83 4 2 689 1118 244 120 16 chr12 13651161 13651536 -107605994 + MTD LTR MaLR 1 414 -5 2 689 1388 105 0 5 chr12 13651737 13651929 -107605601 + B2_Mm2 SINE B2 1 191 -4 2 689 234 0 0 0 chr12 13651985 13652011 -107605519 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 689 8591 33 0 2 chr12 13652075 13653357 -107604173 - L1Md_F2 LINE L1 0 6582 5305 2 689 884 257 24 10 chr12 13653357 13653565 -107603965 - B4 SINE B4 -63 229 19 2 689 1010 71 0 7 chr12 13653781 13653922 -107603608 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 2 689 267 31 0 0 chr12 13655354 13655386 -107602144 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 689 741 344 32 11 chr12 13655394 13655673 -107601857 - B4A SINE B4 -6 286 2 2 689 7600 67 0 7 chr12 13655981 13656933 -107600597 - L1_Mus1 LINE L1 -1 6566 5622 2 689 343 187 139 9 chr12 13657344 13657452 -107600078 + MER102b DNA MER1_type 99 220 -121 2 689 288 0 0 0 chr12 13657853 13657885 -107599645 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 689 21 71 0 0 chr12 13658652 13658694 -107598836 + AT_rich Low_complexity Low_complexity 1 42 0 2 689 7678 76 2 11 chr12 13658701 13658723 -107598807 - L1Md_F2 LINE L1 -3 6579 6564 2 689 4303 105 23 0 chr12 13658723 13659332 -107598198 - L1_Mus4 LINE L1 -7 6629 6007 2 689 21971 118 5 78 chr12 13659332 13661731 -107595799 - L1Md_F2 LINE L1 -19 6563 4784 2 689 8334 38 2 0 chr12 13661731 13662750 -107594780 + L1Md_F2 LINE L1 5588 6582 0 2 689 21971 151 19 111 chr12 13662750 13666793 -107590737 - L1Md_F2 LINE L1 -1100 4783 685 2 689 1810 86 56 0 chr12 13666834 13667101 -107590429 - Lx LINE L1 -24 6630 6349 2 689 606 179 8 75 chr12 13667101 13667234 -107590296 + B1_Mur3 SINE Alu 25 148 -1 2 689 378 107 0 0 chr12 13667235 13667291 -107590239 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 2 689 1600 221 150 30 chr12 13667319 13667847 -107589683 + RMER19B LTR ERVK 309 899 -3 2 689 34371 62 17 1 chr12 13668976 13674096 -107583434 + L1Md_F3 LINE L1 422 5586 -297 2 689 8148 40 2 8 chr12 13674097 13675086 -107582444 + L1Md_F3 LINE L1 5588 6570 -14 2 689 933 156 6 28 chr12 13676253 13676431 -107581099 - URR1A DNA MER1_type 0 226 53 2 689 281 77 39 0 chr12 13677179 13677231 -107580299 + (TCTG)n Simple_repeat Simple_repeat 3 56 0 2 689 811 289 45 45 chr12 13677275 13677561 -107579969 - B4A SINE B4 -6 286 1 2 689 180 351 43 26 chr12 13677572 13677689 -107579841 - MIRb SINE MIR -123 145 27 2 689 304 333 0 95 chr12 13679194 13679363 -107578167 + HAL1-2a_MD LINE L1 2345 2497 -527 2 689 237 316 41 41 chr12 13679485 13679607 -107577923 - MIRb SINE MIR -107 161 40 2 689 246 265 84 0 chr12 13680719 13680802 -107576728 + MLT1H1 LTR MaLR 288 377 -178 2 689 1078 218 29 35 chr12 13680821 13681159 -107576371 - RLTR11A LTR ERVK -59 518 193 2 689 437 190 109 18 chr12 13681202 13681346 -107576184 - RLTR11A LTR ERVK -329 248 104 2 689 284 190 35 0 chr12 13681367 13681425 -107576105 - RLTR11A LTR ERVK -468 60 1 2 689 265 318 51 36 chr12 13681463 13681600 -107575930 + MLT1H1 LTR MaLR 417 555 0 2 689 702 314 82 14 chr12 13682387 13682739 -107574791 - MTEb LTR MaLR 0 379 4 2 689 189 0 0 0 chr12 13683601 13683622 -107573908 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 689 423 0 0 0 chr12 13684874 13684921 -107572609 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 689 626 109 10 0 chr12 13685482 13685583 -107571947 + (TG)n Simple_repeat Simple_repeat 2 103 0 2 689 576 272 19 25 chr12 13686435 13686597 -107570933 - B4A SINE B4 -4 288 128 2 689 743 232 28 7 chr12 13687330 13687534 -107569996 - B3A SINE B2 0 216 1 2 689 254 247 188 0 chr12 13687827 13687912 -107569618 + B4A SINE B4 117 217 -75 2 689 661 225 49 68 chr12 13691289 13691494 -107566036 + RLTR14 LTR ERV1 45 245 -137 2 689 612 0 0 0 chr12 13691911 13691979 -107565551 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 689 930 255 83 12 chr12 13692092 13692346 -107565184 + B4A SINE B4 1 272 -20 2 689 588 65 0 0 chr12 13692356 13692433 -107565097 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 689 306 0 0 0 chr12 13692433 13692466 -107565064 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 689 366 165 61 20 chr12 13692564 13692663 -107564867 - L1MA9 LINE L1 -21 6291 6189 2 689 2475 224 85 32 chr12 13692719 13693498 -107564032 - L1M3 LINE L1 -2229 3911 3092 2 689 733 145 16 0 chr12 13693495 13693619 -107563911 + L1M3 LINE L1 2536 2661 -3479 2 689 499 230 139 23 chr12 13693709 13694053 -107563477 - MLT1B LTR MaLR 0 390 7 2 689 261 0 0 0 chr12 13694167 13694196 -107563334 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 689 389 260 30 8 chr12 13694203 13694335 -107563195 - Lx9 LINE L1 -194 7450 7316 2 689 1118 151 81 14 chr12 13695505 13695714 -107561816 + URR1A DNA MER1_type 3 225 -1 2 689 296 257 132 55 chr12 13696496 13696731 -107560799 - RMER17C LTR ERVK -45 365 113 2 689 644 54 11 0 chr12 13696767 13696860 -107560670 + (GA)n Simple_repeat Simple_repeat 2 95 0 2 689 420 20 0 0 chr12 13697228 13697277 -107560253 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 689 1846 124 17 136 chr12 13698143 13698608 -107558922 - RMER17C LTR ERVK 0 410 1 2 689 3357 36 8 0 chr12 13699306 13699699 -107557831 + MTA_Mm LTR MaLR 1 396 0 2 689 204 40 0 0 chr12 13700390 13700415 -107557115 + (ATGGTG)n Simple_repeat Simple_repeat 4 28 0 2 689 227 365 0 0 chr12 13700425 13700499 -107557031 - ID4 SINE ID -9 74 1 2 689 553 295 52 27 chr12 13700502 13700868 -107556662 - Charlie2b DNA MER1_type -258 2524 2150 2 689 1650 171 119 3 chr12 13702442 13702777 -107554753 - ORR1C1 LTR MaLR 0 378 5 2 689 425 290 221 10 chr12 13703076 13703271 -107554259 - B4 SINE B4 -1 291 56 2 689 230 319 55 0 chr12 13703561 13703652 -107553878 - MIR SINE MIR -68 140 45 2 689 297 0 0 0 chr12 13703755 13703788 -107553742 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 689 381 58 0 0 chr12 13703790 13703842 -107553688 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 689 308 226 71 12 chr12 13704878 13704963 -107552567 - MTEa LTR MaLR 0 379 290 2 689 315 0 0 0 chr12 13705066 13705101 -107552429 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 689 360 0 0 0 chr12 13705101 13705140 -107552390 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 2 689 266 261 32 11 chr12 13705299 13705392 -107552138 + CT-rich Low_complexity Low_complexity 2 96 0 2 689 297 169 24 12 chr12 13705404 13705488 -107552042 + CT-rich Low_complexity Low_complexity 5 89 0 2 689 377 305 19 19 chr12 13705539 13705693 -107551837 + CT-rich Low_complexity Low_complexity 4 157 0 2 689 829 246 46 78 chr12 13707546 13707708 -107549822 + MTD LTR MaLR 1 165 -254 2 689 2550 141 5 17 chr12 13707708 13708120 -107549410 - MTB_Mm LTR MaLR 0 407 1 2 689 829 247 47 78 chr12 13708120 13708241 -107549289 + MTD LTR MaLR 139 279 -100 2 689 922 196 136 0 chr12 13708241 13708440 -107549090 - URR1A DNA MER1_type 0 226 1 2 689 460 282 111 106 chr12 13708440 13708532 -107548998 + MTD LTR MaLR 280 378 -1 2 689 251 287 159 35 chr12 13708545 13708715 -107548815 + L1MD3 LINE L1 6478 6668 -1327 2 689 240 292 0 0 chr12 13708941 13709006 -107548524 - MER67A LTR ERV1 -466 77 13 2 689 254 256 172 18 chr12 13709041 13709204 -107548326 + L1MA9 LINE L1 5871 6058 -254 2 689 267 31 0 0 chr12 13709204 13709236 -107548294 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 689 1699 217 45 17 chr12 13709797 13710201 -107547329 + MTD LTR MaLR 3 417 -2 2 689 2457 154 43 8 chr12 13711041 13711440 -107546090 + MTC LTR MaLR 5 417 -4 2 689 5366 196 63 19 chr12 13711443 13712645 -107544885 + MTC-int LTR MaLR 2 1256 -2 2 689 2450 154 12 24 chr12 13712647 13713071 -107544459 + MTC LTR MaLR 1 419 -2 2 689 202 274 35 35 chr12 13713104 13713191 -107544339 - MIRc SINE MIR -62 206 120 2 689 914 288 65 65 chr12 13713730 13713850 -107543680 + MTEa LTR MaLR 1 114 -265 2 689 2000 147 60 14 chr12 13713850 13714201 -107543329 + ORR1B2 LTR MaLR 1 367 0 2 689 914 288 65 65 chr12 13714201 13714451 -107543079 + MTEa LTR MaLR 115 371 -8 2 689 198 91 0 0 chr12 13714521 13714554 -107542976 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2 689 305 285 52 37 chr12 13715356 13715491 -107542039 + MER58B DNA MER1_type 194 330 -11 2 689 263 159 29 0 chr12 13717037 13717106 -107540424 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 2 689 600 118 0 0 chr12 13717680 13717773 -107539757 - URR1B DNA MER1_type -1 224 132 2 689 7771 45 0 16 chr12 13717809 13718763 -107538767 - L1Md_F2 LINE L1 0 6582 5644 2 689 657 257 0 0 chr12 13718763 13718903 -107538627 - URR1B DNA MER1_type -85 140 1 2 689 593 173 95 89 chr12 13719668 13719858 -107537672 + URR1B DNA MER1_type 35 225 0 2 689 228 175 0 0 chr12 13720494 13720534 -107536996 - RSINE1 SINE B4 -115 50 11 2 689 752 209 15 99 chr12 13721068 13721270 -107536260 + ORR1D1 LTR MaLR 8 192 -182 2 689 367 257 145 2 chr12 13721308 13721449 -107536081 + ORR1D1 LTR MaLR 166 324 -46 2 689 347 158 18 22 chr12 13721440 13721532 -107535998 - ORR1D1 LTR MaLR -9 375 284 2 689 592 204 139 58 chr12 13721571 13721743 -107535787 - ORR1D1 LTR MaLR -188 186 1 2 689 297 192 176 14 chr12 13721743 13721811 -107535719 + ORR1D1 LTR MaLR 295 374 0 2 689 283 391 37 14 chr12 13721815 13722030 -107535500 + Arthur1B DNA Tip100 391 610 -615 2 689 588 337 71 20 chr12 13722233 13722642 -107534888 + Arthur1B DNA Tip100 770 1199 -26 2 689 317 288 0 0 chr12 13722797 13722870 -107534660 - ID4 SINE ID -9 74 2 2 689 239 269 20 88 chr12 13722892 13722994 -107534536 - B1F1 SINE Alu -51 98 4 2 689 1593 218 83 44 chr12 13723052 13723436 -107534094 - MTD LTR MaLR -20 399 1 2 689 383 338 74 39 chr12 13724196 13724427 -107533103 + MIRb SINE MIR 13 254 -14 2 689 300 278 102 10 chr12 13724702 13724800 -107532730 - PB1D10 SINE Alu 0 117 11 3 689 330 285 56 40 chr12 13724803 13725072 -107532458 + L1M5 LINE L1 5582 5856 -2026 3 689 21 36 0 0 chr12 13725315 13725343 -107532187 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 529 266 54 15 chr12 13725478 13725608 -107531922 - MLT1B LTR MaLR -16 374 240 3 689 1137 345 39 19 chr12 13725805 13726266 -107531264 - MLT-int LTR MaLR -3 1732 1263 3 689 245 306 112 0 chr12 13726562 13726660 -107530870 - MLT1B-int LTR MaLR -704 667 559 3 689 755 237 112 15 chr12 13727070 13727267 -107530263 + B3 SINE B2 1 216 0 3 689 1448 122 14 5 chr12 13727443 13727666 -107529864 + URR1B DNA MER1_type 1 225 0 3 689 436 70 27 14 chr12 13727695 13727768 -107529762 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 3 689 2120 168 11 3 chr12 13727812 13728193 -107529337 - Lx LINE L1 -12 6642 6259 3 689 2197 176 114 70 chr12 13730018 13730518 -107527012 + RLTR28 LTR ERVL 1 522 -2 3 689 237 229 0 0 chr12 13730869 13730917 -107526613 - L1MC LINE L1 -2475 3671 3624 3 689 249 269 195 77 chr12 13730937 13731106 -107526424 + MER5A DNA MER1_type 1 189 0 3 689 213 65 0 0 chr12 13731253 13731284 -107526246 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 689 247 274 178 0 chr12 13732091 13732164 -107525366 + PB1D7 SINE Alu 24 109 -11 3 689 421 185 24 12 chr12 13732307 13732389 -107525141 - ID4_ SINE ID 0 83 1 3 689 525 255 49 21 chr12 13732461 13732605 -107524925 + B1F SINE Alu 2 149 0 3 689 374 324 52 31 chr12 13733205 13733256 -107524274 + L1M5 LINE L1 4627 4676 -1470 3 689 917 42 8 0 chr12 13733256 13733374 -107524156 + (GA)n Simple_repeat Simple_repeat 2 120 0 3 689 374 324 52 31 chr12 13733374 13733516 -107524014 + L1M5 LINE L1 4677 4824 -1322 3 689 299 250 26 26 chr12 13734145 13734223 -107523307 - RSINE1 SINE B4 -74 91 14 3 689 230 295 95 54 chr12 13735769 13735916 -107521614 + MIRb SINE MIR 9 161 -107 3 689 286 317 146 58 chr12 13735940 13736111 -107521419 - MLT1A0 LTR MaLR -12 353 168 3 689 333 0 0 0 chr12 13736147 13736184 -107521346 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 689 422 184 11 65 chr12 13736202 13736295 -107521235 - B4A SINE B4 0 292 205 3 689 2077 147 100 21 chr12 13736295 13736725 -107520805 + RMER4A LTR ERVK 1 464 -2 3 689 886 279 25 0 chr12 13736767 13736968 -107520562 - B4A SINE B4 -86 206 1 3 689 270 0 0 0 chr12 13737833 13737863 -107519667 + (T)n Simple_repeat Simple_repeat 1 30 0 3 689 342 80 0 0 chr12 13738650 13738700 -107518830 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 3 689 247 271 33 76 chr12 13738850 13738942 -107518588 - MTEa LTR MaLR -13 366 279 3 689 248 192 0 25 chr12 13739033 13739113 -107518417 + (CAGAGA)n Simple_repeat Simple_repeat 1 78 0 3 689 303 265 87 83 chr12 13739133 13739351 -107518179 + L1M4b LINE L1 1705 1923 -5411 3 689 198 0 0 0 chr12 13739786 13739808 -107517722 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 3 689 261 0 0 0 chr12 13739810 13739839 -107517691 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 689 450 0 0 0 chr12 13739985 13740035 -107517495 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 689 30 97 0 0 chr12 13741704 13741797 -107515733 + AT_rich Low_complexity Low_complexity 1 93 0 3 689 1931 182 40 35 chr12 13741865 13741943 -107515587 + ORR1B1 LTR MaLR 1 82 -296 3 689 865 203 112 15 chr12 13741943 13742148 -107515382 - URR1A DNA MER1_type -1 225 1 3 689 1931 182 40 35 chr12 13742148 13742445 -107515085 + ORR1B1 LTR MaLR 83 378 0 3 689 1804 191 214 22 chr12 13742681 13743119 -107514411 + MT2B LTR ERVL 1 538 -63 3 689 378 0 0 0 chr12 13743119 13743161 -107514369 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 689 237 65 0 0 chr12 13743161 13743191 -107514339 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 689 1804 191 214 22 chr12 13743191 13743219 -107514311 + MT2B LTR ERVL 539 566 -35 3 689 517 77 33 0 chr12 13743219 13743310 -107514220 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 3 689 1804 191 214 22 chr12 13743310 13743345 -107514185 + MT2B LTR ERVL 567 600 -1 3 689 7496 155 145 81 chr12 13743346 13745190 -107512340 + ORR1B1-int LTR MaLR 3 1963 0 3 689 2170 178 13 20 chr12 13745192 13745587 -107511943 + ORR1B1 LTR MaLR 3 394 0 3 689 200 316 0 0 chr12 13747631 13747688 -107509842 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 689 435 19 0 0 chr12 13747703 13747755 -107509775 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 689 639 279 83 27 chr12 13748259 13748631 -107508899 - L1MA5A LINE L1 -364 5933 5541 3 689 313 264 34 22 chr12 13748946 13749035 -107508495 + ORR1E LTR MaLR 270 359 0 3 689 525 311 42 79 chr12 13749642 13749883 -107507647 + B4A SINE B4 5 236 -56 3 689 273 361 32 32 chr12 13750406 13750529 -107507001 - MIRc SINE MIR -109 159 37 3 689 519 325 88 29 chr12 13750834 13751107 -107506423 - B4A SINE B4 -2 290 2 3 689 321 68 0 0 chr12 13751512 13751556 -107505974 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 689 281 283 152 42 chr12 13753165 13753283 -107504247 + MIRb SINE MIR 28 158 -110 3 689 1048 190 93 0 chr12 13754320 13754525 -107503005 + URR1B DNA MER1_type 1 224 -1 3 689 344 331 53 30 chr12 13754700 13754831 -107502699 - B4A SINE B4 -158 134 1 3 689 418 323 31 46 chr12 13754885 13755015 -107502515 - RSINE1 SINE B4 0 165 38 3 689 194 248 93 23 chr12 13755752 13755852 -107501678 + MIR SINE MIR 64 175 -93 3 689 230 279 0 0 chr12 13756865 13756926 -107500604 - MIRc SINE MIR -9 259 199 3 689 186 273 136 39 chr12 13756914 13757017 -107500513 + L2 LINE L2 2340 2452 -967 3 689 269 310 90 65 chr12 13757212 13757367 -107500163 - MER5A1 DNA MER1_type -1 165 7 3 689 211 358 122 0 chr12 13757372 13757520 -107500010 - MER5B DNA MER1_type -8 170 5 3 689 210 384 31 31 chr12 13757772 13757901 -107499629 + MIR3 SINE MIR 10 138 -70 3 689 1192 153 113 0 chr12 13757911 13758114 -107499416 - URR1A DNA MER1_type 0 226 1 3 689 862 86 0 0 chr12 13758603 13758719 -107498811 - B1_Mm SINE Alu 0 147 32 3 689 21 36 0 0 chr12 13758793 13758821 -107498709 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 832 238 217 19 chr12 13760833 13761146 -107496384 + MTD LTR MaLR 18 392 -27 3 689 27 0 0 0 chr12 13761716 13761743 -107495787 + AT_rich Low_complexity Low_complexity 1 27 0 3 689 21 0 0 0 chr12 13761785 13761806 -107495724 + AT_rich Low_complexity Low_complexity 1 21 0 3 690 21 36 0 0 chr12 13763256 13763284 -107494246 + AT_rich Low_complexity Low_complexity 1 28 0 3 690 288 0 0 0 chr12 13764446 13764478 -107493052 + (T)n Simple_repeat Simple_repeat 1 32 0 3 690 36134 31 0 1 chr12 13764487 13770721 -107486809 - L1Md_T LINE L1 0 6585 260 3 690 819 242 36 179 chr12 13771126 13771272 -107486258 - ORR1D1 LTR MaLR -3 371 257 3 690 351 0 0 0 chr12 13771272 13771311 -107486219 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 690 819 242 36 179 chr12 13771311 13771527 -107486003 - ORR1D1 LTR MaLR -118 256 61 3 690 390 121 0 0 chr12 13771924 13771982 -107485548 - ORR1D1 LTR MaLR -316 58 1 3 690 24 0 0 0 chr12 13772005 13772029 -107485501 + AT_rich Low_complexity Low_complexity 1 24 0 3 690 380 239 0 0 chr12 13772451 13772530 -107485000 - ID4 SINE ID -61 91 13 3 690 507 371 25 15 chr12 13774035 13774235 -107483295 - B4A SINE B4 -90 202 1 3 690 223 277 0 0 chr12 13774363 13774410 -107483120 - MIR SINE MIR -33 229 183 3 690 390 327 118 77 chr12 13775239 13775670 -107481860 - MLT1G3 LTR MaLR -12 583 95 3 690 341 271 111 150 chr12 13775673 13776031 -107481499 + ORR1E LTR MaLR 4 345 -29 3 690 189 0 0 0 chr12 13776031 13776052 -107481478 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 690 405 0 0 0 chr12 13776576 13776621 -107480909 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 690 206 329 37 25 chr12 13777496 13777525 -107480005 + MIRb SINE MIR 121 149 -119 3 690 465 19 0 0 chr12 13777525 13777579 -107479951 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 690 206 329 37 25 chr12 13777579 13777630 -107479900 + MIRb SINE MIR 150 201 -67 3 690 1194 148 75 14 chr12 13779387 13779600 -107477930 - URR1A DNA MER1_type 0 226 1 3 690 356 280 107 68 chr12 13779600 13779834 -107477696 - MLT1B LTR MaLR -127 263 21 3 690 3416 103 93 2 chr12 13779897 13780382 -107477148 - RMER16 LTR ERVK -4 529 1 3 690 227 95 0 45 chr12 13780557 13780601 -107476929 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 3 690 1156 79 0 0 chr12 13780870 13781010 -107476520 - B1_Mus2 SINE Alu -6 141 2 3 690 717 217 80 0 chr12 13781135 13781273 -107476257 + RSINE1 SINE B4 3 151 -14 3 690 255 125 0 0 chr12 13781448 13781488 -107476042 + (CATA)n Simple_repeat Simple_repeat 1 40 0 3 690 848 335 103 17 chr12 13782080 13782499 -107475031 - MLT1E2 LTR MaLR 0 627 173 3 690 1861 195 70 3 chr12 13782983 13783327 -107474203 + ORR1B2 LTR MaLR 1 367 0 3 690 279 56 18 36 chr12 13783810 13783866 -107473664 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 690 204 281 0 17 chr12 13784241 13784299 -107473231 + CT-rich Low_complexity Low_complexity 2 58 0 3 690 1660 311 58 19 chr12 13786163 13786995 -107470535 - L1MB7 LINE L1 -1 6183 5320 3 690 830 287 83 9 chr12 13787670 13788091 -107469439 - L1M5 LINE L1 -2416 3730 3268 3 690 219 114 0 0 chr12 13788259 13788294 -107469236 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 690 349 295 223 0 chr12 13788300 13788412 -107469118 - RSINE1 SINE B4 -17 148 12 3 690 1278 245 53 45 chr12 13788703 13789079 -107468451 + MTE2a LTR MaLR 1 379 0 3 690 3185 336 72 28 chr12 13789258 13789355 -107468175 - ORR1E-int LTR MaLR -162 1418 1330 3 690 1684 222 105 5 chr12 13789355 13789736 -107467794 - MTD LTR MaLR 0 419 1 3 690 3185 336 72 28 chr12 13789736 13790996 -107466534 - ORR1E-int LTR MaLR -251 1329 1 3 690 327 343 134 42 chr12 13791005 13791267 -107466263 - ORR1E LTR MaLR -2 357 72 3 690 358 330 65 49 chr12 13791304 13791673 -107465857 - L1M5 LINE L1 -3327 2819 2445 3 690 393 22 0 0 chr12 13791909 13791955 -107465575 + (TAA)n Simple_repeat Simple_repeat 2 47 0 3 690 538 45 0 0 chr12 13792516 13792582 -107464948 - MTB LTR MaLR 0 400 335 3 690 3509 50 0 2 chr12 13792582 13792979 -107464551 - MTA_Mm LTR MaLR 0 396 1 3 690 9478 42 7 1 chr12 13792979 13794070 -107463460 - MTA_Mm-int LTR MaLR 0 1098 1 3 690 2749 60 11 6 chr12 13794070 13794425 -107463105 - MTA_Mm LTR MaLR 0 396 40 3 690 413 0 0 0 chr12 13794565 13794612 -107462918 - MTA_Mm LTR MaLR -348 48 2 3 690 600 53 0 0 chr12 13797166 13797242 -107460288 + (GGGAA)n Simple_repeat Simple_repeat 1 76 0 3 690 3954 90 6 14 chr12 13797699 13798219 -107459311 - L1Md_F2 LINE L1 0 6582 6067 3 690 216 67 0 0 chr12 13798690 13798720 -107458810 + (CTG)n Simple_repeat Simple_repeat 2 31 0 4 690 1482 169 83 30 chr12 13799201 13799562 -107457968 - L1MEc LINE L1 -5473 927 548 4 690 942 312 46 14 chr12 13799562 13799907 -107457623 - MER68 LTR ERVL -44 519 164 4 690 526 322 62 19 chr12 13799993 13800202 -107457328 + MER47B DNA MER2_type 28 245 -173 4 690 238 318 0 0 chr12 13800366 13800432 -107457098 - MER58B DNA MER1_type -47 294 229 4 690 236 364 11 0 chr12 13801419 13801507 -107456023 + MIR SINE MIR 101 189 -73 4 690 1631 40 0 15 chr12 13802235 13802436 -107455094 - L1Md_F3 LINE L1 -1 6583 6386 4 690 321 325 0 65 chr12 13802469 13802607 -107454923 + MIRb SINE MIR 118 246 -22 4 690 215 227 149 15 chr12 13802645 13802712 -107454818 - L2c LINE L2 -38 3349 3274 4 690 756 119 50 36 chr12 13802761 13802900 -107454630 - B2_Mm2 SINE B2 -53 142 2 4 690 2403 49 0 0 chr12 13803738 13804026 -107453504 + L1Md_F2 LINE L1 5299 5586 -297 4 690 8664 45 1 5 chr12 13804026 13805026 -107452504 + L1Md_F2 LINE L1 5587 6582 0 4 690 816 147 35 7 chr12 13805061 13805205 -107452325 + URR1A DNA MER1_type 79 226 0 4 690 1536 220 57 11 chr12 13805564 13805918 -107451612 + ORR1D2 LTR MaLR 1 370 0 4 690 698 318 79 41 chr12 13807085 13807452 -107450078 - MLT1B LTR MaLR -4 386 6 4 690 700 114 22 33 chr12 13807701 13807882 -107449648 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 4 690 182 231 18 71 chr12 13807986 13808042 -107449488 + MIRb SINE MIR 192 244 -24 4 690 21 0 0 0 chr12 13808683 13808704 -107448826 + AT_rich Low_complexity Low_complexity 1 21 0 4 690 8763 57 30 6 chr12 13808708 13809780 -107447750 + MTA_Mm-int LTR MaLR 1 1098 0 4 690 3606 28 5 0 chr12 13809780 13810174 -107447356 + MTA_Mm LTR MaLR 1 396 0 4 690 462 18 0 0 chr12 13811369 13811424 -107446106 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 690 324 336 60 39 chr12 13812269 13812475 -107445055 - B4A SINE B4 -10 282 71 4 690 4032 153 20 26 chr12 13812475 13813164 -107444366 + RLTR17 LTR ERVK 1 685 -7 4 690 1721 142 10 37 chr12 13813164 13813463 -107444067 - L1Md_F3 LINE L1 -1 6583 6293 4 690 234 284 51 114 chr12 13814060 13814235 -107443295 - B4 SINE B4 -115 177 14 4 690 1021 87 0 0 chr12 13814191 13814329 -107443201 + B1_Mus1 SINE Alu 11 148 0 4 690 224 56 54 36 chr12 13814329 13814385 -107443145 + (CAAA)n Simple_repeat Simple_repeat 3 59 0 4 690 228 240 20 20 chr12 13814402 13814453 -107443077 - B4A SINE B4 -236 56 6 4 690 779 80 9 0 chr12 13814931 13815043 -107442487 + (TC)n Simple_repeat Simple_repeat 2 114 0 4 690 270 57 57 0 chr12 13817631 13817684 -107439846 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 690 258 311 153 19 chr12 13820173 13820349 -107437181 + MIRb SINE MIR 35 229 -39 4 690 1776 212 12 0 chr12 13820632 13820953 -107436577 + MTD LTR MaLR 1 325 -94 4 690 7814 61 16 0 chr12 13820953 13822069 -107435461 + L1_Mus2 LINE L1 5431 6564 -2 4 690 351 97 0 217 chr12 13822106 13822198 -107435332 + MTD LTR MaLR 339 410 -9 4 690 433 290 66 24 chr12 13822739 13822905 -107434625 + B4A SINE B4 1 173 -119 4 690 254 330 108 20 chr12 13822988 13823164 -107434366 + B4 SINE B4 90 276 -16 4 690 1182 7 0 0 chr12 13823177 13823312 -107434218 + (TCTCCC)n Simple_repeat Simple_repeat 5 139 0 4 690 492 32 0 0 chr12 13823345 13823407 -107434123 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 690 332 357 106 42 chr12 13824352 13825095 -107432435 + HAL1 LINE L1 813 1603 -904 4 690 495 306 33 26 chr12 13826073 13826224 -107431306 - Lx8 LINE L1 -122 7351 7200 4 690 549 0 0 0 chr12 13826234 13826295 -107431235 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 4 690 241 313 105 35 chr12 13826295 13826381 -107431149 - PB1D9 SINE Alu -27 93 2 4 690 342 0 0 0 chr12 13828158 13828196 -107429334 + (TTATA)n Simple_repeat Simple_repeat 4 41 0 4 690 1251 75 7 0 chr12 13828732 13828879 -107428651 - B1_Mus1 SINE Alu 0 148 1 4 690 345 292 0 0 chr12 13829177 13829266 -107428264 + PB1D10 SINE Alu 27 115 -2 4 690 6112 89 52 3 chr12 13829408 13830290 -107427240 - L1VL2 LINE L1 -1789 1826 897 4 690 198 0 0 0 chr12 13830290 13830312 -107427218 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 690 6112 69 32 11 chr12 13830312 13830998 -107426532 - L1VL2 LINE L1 -5439 896 192 4 690 207 0 0 0 chr12 13831456 13831479 -107426051 + (CAT)n Simple_repeat Simple_repeat 2 24 0 4 690 402 280 26 53 chr12 13831533 13831684 -107425846 + B1F1 SINE Alu 3 149 0 4 690 257 261 14 68 chr12 13831696 13831770 -107425760 + ID2 SINE ID 12 81 -2 4 690 528 59 0 0 chr12 13832656 13832724 -107424806 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 4 690 425 345 131 25 chr12 13833463 13833707 -107423823 - B4 SINE B4 -2 290 21 4 690 2998 46 0 3 chr12 13834400 13834773 -107422757 - L1Md_F2 LINE L1 0 6582 6211 4 690 206 62 0 30 chr12 13835232 13835265 -107422265 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 690 638 305 100 25 chr12 13835265 13835796 -107421734 + L1MB4 LINE L1 5306 5876 -304 4 690 468 0 0 0 chr12 13835796 13835848 -107421682 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 690 324 0 0 0 chr12 13835856 13835892 -107421638 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 690 1029 309 23 8 chr12 13835898 13836159 -107421371 - B4A SINE B4 -20 272 8 4 690 1105 93 0 12 chr12 13836437 13836601 -107420929 - L1Md_F2 LINE L1 -9 6573 6412 4 690 216 0 0 0 chr12 13837472 13837496 -107420034 + (T)n Simple_repeat Simple_repeat 1 24 0 4 690 189 0 0 0 chr12 13837551 13837572 -107419958 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 690 207 0 0 0 chr12 13837573 13837596 -107419934 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 690 21 0 0 0 chr12 13837775 13837796 -107419734 + AT_rich Low_complexity Low_complexity 1 21 0 4 690 27 49 0 0 chr12 13837958 13837999 -107419531 + AT_rich Low_complexity Low_complexity 1 41 0 4 690 396 345 82 0 chr12 13839873 13840067 -107417463 + MER44D DNA MER2_type 11 220 -485 4 690 730 274 10 0 chr12 13840067 13840268 -107417262 - MER44B DNA MER2_type -127 423 221 4 690 447 87 0 0 chr12 13840269 13840338 -107417192 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 690 1111 78 0 0 chr12 13840357 13840499 -107417031 + B1_Mus1 SINE Alu 2 143 -5 4 690 225 0 0 0 chr12 13840499 13840524 -107417006 + (CAAAC)n Simple_repeat Simple_repeat 4 28 0 4 690 338 103 29 0 chr12 13840518 13840586 -107416944 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 4 690 22 35 0 0 chr12 13840884 13840913 -107416617 + AT_rich Low_complexity Low_complexity 1 29 0 4 690 296 312 13 0 chr12 13841123 13841200 -107416330 + MLT1F2 LTR MaLR 1 78 -482 4 690 310 268 124 107 chr12 13841198 13841482 -107416048 + MLT1F2 LTR MaLR 205 530 -39 4 690 624 27 0 0 chr12 13841947 13842021 -107415509 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 690 500 81 14 0 chr12 13842121 13842195 -107415335 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 690 204 327 117 45 chr12 13842413 13842567 -107414963 - MIRc SINE MIR -60 208 44 4 690 669 13 0 0 chr12 13842915 13842993 -107414537 + (CAAAC)n Simple_repeat Simple_repeat 2 79 0 4 690 991 283 117 19 chr12 13843445 13843769 -107413761 + MTEa LTR MaLR 22 377 -2 4 690 779 291 79 41 chr12 13844699 13844989 -107412541 + MTE2a LTR MaLR 59 359 -20 4 690 267 348 78 24 chr12 13845267 13845473 -107412057 - MIR SINE MIR -29 233 17 4 690 1366 70 16 0 chr12 13845509 13845694 -107411836 - B2_Mm1a SINE B2 -5 188 1 4 690 328 287 140 45 chr12 13845977 13846134 -107411396 - MIRc SINE MIR -94 174 3 4 690 464 312 0 54 chr12 13846964 13847113 -107410417 - B3A SINE B2 -36 162 22 4 690 948 295 57 3 chr12 13847113 13847412 -107410118 + Lx5 LINE L1 6697 7011 -39 4 690 1218 309 57 15 chr12 13847421 13847756 -107409774 - MTE2b LTR MaLR -30 349 1 4 690 324 120 0 0 chr12 13848469 13848519 -107409011 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 690 388 285 64 64 chr12 13849887 13849983 -107407547 + CYRA11_Mm Unknown Y-chromosome 77 172 -445 4 690 1049 184 41 0 chr12 13849983 13850179 -107407351 - URR1B DNA MER1_type 0 225 22 4 690 283 157 29 0 chr12 13850321 13850391 -107407139 + G-rich Low_complexity Low_complexity 1 72 0 4 690 292 287 25 0 chr12 13851282 13851387 -107406143 + L1M4b LINE L1 2132 2214 -5120 4 690 207 0 0 0 chr12 13851617 13851640 -107405890 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 690 811 79 0 9 chr12 13851640 13851746 -107405784 - B1_Mm SINE Alu -9 138 33 4 690 286 277 48 0 chr12 13851923 13852006 -107405524 + RMER20B LTR ERVK 28 114 -513 4 690 333 0 0 0 chr12 13852717 13852754 -107404776 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 690 243 0 0 0 chr12 13852754 13852780 -107404750 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 690 203 229 0 16 chr12 13854141 13854203 -107403327 + (TATG)n Simple_repeat Simple_repeat 4 64 0 4 690 3590 250 119 56 chr12 13854559 13854989 -107402541 + ORR1D2-int LTR MaLR 176 601 -769 4 690 333 0 0 0 chr12 13854989 13855026 -107402504 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 690 289 0 49 0 chr12 13855026 13855066 -107402464 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 690 3590 250 119 56 chr12 13855066 13855758 -107401772 + ORR1D2-int LTR MaLR 602 1369 -1 4 690 1061 222 197 13 chr12 13855761 13856071 -107401459 + ORR1D2 LTR MaLR 4 370 0 4 690 6070 139 26 4 chr12 13856365 13857434 -107400096 + L1Md_F LINE L1 168 1259 -5465 4 690 1528 173 6 73 chr12 13857434 13857777 -107399753 + RLTRETN_Mm LTR ERVK 1 320 -2 4 690 3189 74 3 30 chr12 13857777 13858049 -107399481 + L1Md_F LINE L1 1260 1524 -4359 4 690 5691 51 0 21 chr12 13858049 13858772 -107398758 + L1Md_F2 LINE L1 5863 6570 -12 4 690 390 315 101 79 chr12 13859522 13859846 -107397684 - MLT1H1 LTR MaLR -227 364 48 4 690 6903 83 15 9 chr12 13860168 13861157 -107396373 - L1Md_F2 LINE L1 -1 6581 5587 4 690 11740 51 1 0 chr12 13861181 13863466 -107394064 - L1Md_T LINE L1 0 6582 4294 4 690 13721 106 10 7 chr12 13863463 13866215 -107391315 - L1Md_T LINE L1 -2694 3189 453 4 690 278 293 67 0 chr12 13866232 13866307 -107391223 - ID4_ SINE ID -3 80 1 5 690 267 54 0 0 chr12 13866387 13866424 -107391106 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 690 382 236 115 26 chr12 13866435 13866548 -107390982 - B4 SINE B4 -168 124 2 5 690 324 70 0 0 chr12 13866604 13866647 -107390883 + (CAAG)n Simple_repeat Simple_repeat 1 43 0 5 690 582 364 55 49 chr12 13868779 13869270 -107388260 - HAL1 LINE L1 -5 2502 2009 5 690 296 247 0 0 chr12 13869434 13869507 -107388023 - HAL1 LINE L1 -730 1777 1705 5 690 298 0 23 23 chr12 13869515 13869558 -107387972 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 690 504 295 165 0 chr12 13869843 13870043 -107387487 - MER2 DNA MER2_type -26 319 87 5 690 1234 27 0 0 chr12 13870079 13870299 -107387231 - L1Md_A LINE L1 0 6582 6427 5 690 217 312 96 55 chr12 13871319 13871465 -107386065 - MIRc SINE MIR -104 164 13 5 690 438 20 0 0 chr12 13873168 13873219 -107384311 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 690 456 267 150 0 chr12 13873327 13873446 -107384084 + B4 SINE B4 91 227 -65 5 690 597 303 61 0 chr12 13873446 13873611 -107383919 + B3A SINE B2 1 175 -23 5 690 318 50 0 0 chr12 13873615 13873655 -107383875 + (CATA)n Simple_repeat Simple_repeat 1 40 0 5 690 557 315 80 10 chr12 13873655 13873684 -107383846 + B3 SINE B2 178 212 -4 5 690 225 397 85 73 chr12 13873684 13873757 -107383773 + B4 SINE B4 181 275 -17 5 690 4489 160 43 12 chr12 13873992 13875331 -107382199 + Lx5 LINE L1 5149 6545 -505 5 690 630 310 48 106 chr12 13875420 13875817 -107381713 - MTE2a LTR MaLR 0 379 6 5 690 201 39 0 0 chr12 13876003 13876029 -107381501 + (TTG)n Simple_repeat Simple_repeat 3 28 0 5 690 3262 58 9 5 chr12 13879207 13879626 -107377904 + BGLII LTR ERVK 1 421 0 5 690 187 289 125 50 chr12 13879746 13879866 -107377664 + L2b LINE L2 3019 3147 -228 5 690 216 0 0 0 chr12 13880327 13880351 -107377179 + (T)n Simple_repeat Simple_repeat 1 24 0 5 690 237 254 36 0 chr12 13881750 13881805 -107375725 + polypyrimidine Low_complexity Low_complexity 3 59 0 5 690 3028 71 5 0 chr12 13882283 13882678 -107374852 + L1_Mus1 LINE L1 6170 6566 -1 5 690 239 319 0 0 chr12 13882995 13883064 -107374466 + ID4_ SINE ID 3 71 -12 5 690 2837 195 25 51 chr12 13883567 13884199 -107373331 + RLTR18 LTR ERVK 1 616 0 5 690 413 344 62 36 chr12 13884698 13884891 -107372639 - B3A SINE B2 0 198 1 5 690 896 318 51 17 chr12 13885043 13885681 -107371849 + L1MC1 LINE L1 5672 6332 -1 5 690 9107 65 3 1 chr12 13885686 13886944 -107370586 - L1_Mm LINE L1 -1686 4197 2937 5 690 5463 78 20 3 chr12 13886945 13887680 -107369850 + L1Md_F2 LINE L1 5835 6582 0 5 690 1349 71 0 0 chr12 13888576 13888758 -107368772 - L1_Mus2 LINE L1 -190 6376 6195 5 690 592 329 58 45 chr12 13888979 13889354 -107368176 + ORR1E LTR MaLR 3 370 0 5 690 23 0 0 0 chr12 13889356 13889379 -107368151 + AT_rich Low_complexity Low_complexity 1 23 0 5 690 845 28 9 0 chr12 13889417 13889523 -107368007 - B1_Mus2 SINE Alu 0 147 41 5 690 388 314 147 13 chr12 13890532 13890919 -107366611 - L1MEc LINE L1 -3144 3175 2737 5 690 333 278 33 59 chr12 13890944 13891097 -107366433 - L1M5 LINE L1 -2731 3415 3267 5 690 347 265 178 18 chr12 13891069 13891238 -107366292 - L1MEc LINE L1 -3635 2684 2489 5 690 540 0 0 0 chr12 13891250 13891310 -107366220 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 690 305 338 115 34 chr12 13891352 13891621 -107365909 - B4 SINE B4 -1 291 1 5 690 495 33 0 0 chr12 13891671 13891732 -107365798 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 690 280 309 47 11 chr12 13891749 13891869 -107365661 - ID4 SINE ID -21 131 3 5 690 522 287 158 33 chr12 13891927 13892294 -107365236 - L1MEc LINE L1 -4098 2302 1890 5 690 321 325 0 9 chr12 13892397 13892512 -107365018 - L1MEc LINE L1 -4672 1743 1630 5 690 312 299 85 25 chr12 13892541 13892740 -107364790 - L1MEc LINE L1 -4848 1552 1342 5 690 818 251 262 33 chr12 13892879 13892918 -107364612 - Lx9 LINE L1 -89 7555 7514 5 690 212 86 29 0 chr12 13892918 13892953 -107364577 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 690 818 251 262 33 chr12 13892953 13893486 -107364044 - Lx9 LINE L1 -131 7513 6852 5 86 886 335 91 87 chr12 13893568 13894561 -107362969 - L1MEc LINE L1 -5101 1299 303 5 691 247 355 72 32 chr12 13896166 13896291 -107361239 + MIR3 SINE MIR 11 140 -68 5 691 256 274 131 9 chr12 13896928 13897035 -107360495 + MIRb SINE MIR 114 233 -35 5 691 1765 261 9 0 chr12 13897855 13898292 -107359238 - Lx6 LINE L1 -26 7434 6994 5 691 212 31 0 59 chr12 13898716 13898750 -107358780 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 5 691 265 272 130 67 chr12 13898982 13899109 -107358421 + LTR40a LTR ERVL 6 139 -323 5 691 650 231 213 0 chr12 13899482 13899651 -107357879 - B3 SINE B2 -11 205 1 5 691 203 343 30 20 chr12 13899781 13899882 -107357648 - MIRb SINE MIR -48 220 119 5 691 256 210 57 19 chr12 13901106 13901315 -107356215 + RMER17D LTR ERVK 240 456 -433 5 691 355 313 35 9 chr12 13901317 13901433 -107356097 - ID_B1 SINE B4 -16 208 90 5 691 212 273 0 18 chr12 13901532 13901588 -107355942 + CT-rich Low_complexity Low_complexity 1 55 0 5 691 278 331 23 64 chr12 13901721 13901986 -107355544 + L1MEg LINE L1 552 805 -5279 5 691 251 380 35 0 chr12 13902023 13902165 -107355365 + B1F SINE Alu 3 149 0 5 691 405 0 0 0 chr12 13902555 13902600 -107354930 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 691 186 71 0 0 chr12 13902817 13902845 -107354685 + (A)n Simple_repeat Simple_repeat 1 28 0 5 691 674 302 10 39 chr12 13902847 13903050 -107354480 + B3A SINE B2 2 198 0 5 691 29780 98 28 12 chr12 13903279 13905232 -107352298 + L1Md_F2 LINE L1 380 2349 -3534 5 691 216 0 0 0 chr12 13905232 13905256 -107352274 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 691 29780 79 14 6 chr12 13905256 13908450 -107349080 + L1Md_F2 LINE L1 2350 5586 -297 5 691 8106 51 1 1 chr12 13908451 13909446 -107348084 + L1Md_F2 LINE L1 5588 6582 0 5 691 3813 111 14 4 chr12 13909446 13910005 -107347525 + L1Md_F2 LINE L1 6005 6569 -13 5 691 384 347 0 0 chr12 13910152 13910250 -107347280 + B1F1 SINE Alu 1 98 -51 5 691 8906 18 0 3 chr12 13910567 13911646 -107345884 - L1Md_T LINE L1 -92 5791 4716 5 691 6693 34 10 0 chr12 13911646 13912445 -107345085 + L1Md_T LINE L1 5776 6582 0 5 691 5836 150 13 14 chr12 13912524 13913542 -107343988 - Lx4B LINE L1 -47 7011 5995 5 691 3457 129 26 7 chr12 13913540 13914221 -107343309 + Lx4B LINE L1 5308 6002 -1056 5 691 634 277 36 32 chr12 13914568 13914778 -107342752 - B4 SINE B4 -70 222 1 5 691 420 324 68 49 chr12 13914803 13915069 -107342461 + L1ME3B LINE L1 5109 5379 -767 5 691 256 323 119 31 chr12 13915094 13915446 -107342084 + L1ME3B LINE L1 5380 5762 -411 5 691 256 297 21 0 chr12 13915534 13915679 -107341851 + L1ME3B LINE L1 5888 6035 -205 5 691 253 284 14 0 chr12 13915819 13915893 -107341637 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 691 800 249 40 80 chr12 13915893 13916142 -107341388 - B4A SINE B4 0 292 54 5 691 273 149 0 0 chr12 13917919 13917986 -107339544 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 5 691 662 284 131 30 chr12 13917993 13918251 -107339279 - B4 SINE B4 0 292 9 5 691 37102 39 3 13 chr12 13918367 13924501 -107333029 - L1Md_A LINE L1 -2 6580 511 5 691 226 0 29 29 chr12 13924509 13924544 -107332986 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 691 265 321 71 7 chr12 13926080 13926212 -107331318 - MIR SINE MIR -102 166 27 5 691 758 273 67 97 chr12 13926255 13926451 -107331079 - B4 SINE B4 0 292 104 5 691 387 60 0 0 chr12 13926451 13926501 -107331029 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 691 758 273 67 97 chr12 13926501 13926604 -107330926 - B4 SINE B4 -189 103 3 5 691 325 362 47 7 chr12 13927181 13927331 -107330199 + MER63A DNA AcHobo 1 156 -54 5 691 239 365 50 77 chr12 13927889 13928150 -107329380 + MLT1L LTR MaLR 235 488 -122 5 691 8972 143 24 16 chr12 13928313 13930082 -107327448 - Lx5 LINE L1 -1108 5942 4157 5 691 4585 197 38 5 chr12 13930093 13930972 -107326558 + Lx5 LINE L1 6143 7050 0 5 691 294 29 0 0 chr12 13931077 13931112 -107326418 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 691 1163 246 57 17 chr12 13932086 13932275 -107325255 + MTD LTR MaLR 1 198 -221 5 691 333 0 0 0 chr12 13932275 13932312 -107325218 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 691 1163 246 57 17 chr12 13932312 13932419 -107325111 + MTD LTR MaLR 199 308 -111 5 691 690 219 144 135 chr12 13932548 13932860 -107324670 + MTE2a LTR MaLR 65 379 0 5 691 297 0 0 0 chr12 13933465 13933498 -107324032 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 691 488 339 22 39 chr12 13933615 13933796 -107323734 - B4 SINE B4 -105 187 10 5 691 809 282 18 9 chr12 13933994 13934212 -107323318 + ID_B1 SINE B4 3 222 -2 5 691 507 286 62 83 chr12 13934472 13934895 -107322635 - L1MB1 LINE L1 -13 6155 5742 5 691 243 361 50 50 chr12 13936066 13936206 -107321324 - Arthur1B DNA Tip100 -1077 148 9 5 691 304 311 41 8 chr12 13937381 13937504 -107320026 - MER5A1 DNA MER1_type -37 129 3 5 691 1820 143 114 3 chr12 13937606 13937922 -107319608 + ORR1B1 LTR MaLR 3 353 -41 5 691 3691 118 11 6 chr12 13937926 13938456 -107319074 + Lx3A LINE L1 6436 6968 -13 5 691 285 51 0 0 chr12 13938456 13938495 -107319035 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 691 1243 57 0 49 chr12 13938545 13938568 -107318962 - L1_Mus1 LINE L1 0 6567 6549 5 691 2713 58 3 11 chr12 13938568 13938917 -107318613 + ORR1A0 LTR MaLR 1 346 0 5 691 1243 57 0 49 chr12 13938917 13939076 -107318454 - L1_Mus1 LINE L1 -19 6548 6394 5 691 22 0 0 0 chr12 13939650 13939672 -107317858 + AT_rich Low_complexity Low_complexity 1 22 0 5 691 21 36 0 0 chr12 13939862 13939890 -107317640 + AT_rich Low_complexity Low_complexity 1 28 0 5 691 264 59 0 0 chr12 13939895 13939929 -107317601 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 691 703 313 12 0 chr12 13939937 13940103 -107317427 - B3A SINE B2 -30 168 1 5 691 244 323 36 51 chr12 13940219 13940356 -107317174 + MIR3 SINE MIR 51 185 -23 5 691 470 302 95 72 chr12 13940464 13940728 -107316802 + MamRep434 DNA TcMar 112 381 -45 5 691 914 95 0 0 chr12 13941092 13941239 -107316291 - L1_Mus4 LINE L1 0 6636 6490 5 691 334 113 41 27 chr12 13941377 13941450 -107316080 + CT-rich Low_complexity Low_complexity 3 76 0 5 691 2359 271 100 20 chr12 13941580 13942517 -107315013 + Lx9 LINE L1 6484 7495 -149 6 691 547 272 45 69 chr12 13943119 13943407 -107314123 - Lx8 LINE L1 -86 7387 7107 6 691 387 0 0 0 chr12 13944063 13944106 -107313424 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 691 435 83 0 0 chr12 13944820 13944880 -107312650 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 6 691 328 295 118 88 chr12 13945117 13945448 -107312082 - RMER20B LTR ERVK -210 417 77 6 691 188 0 74 0 chr12 13945640 13945667 -107311863 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 691 1130 75 7 0 chr12 13945670 13945816 -107311714 - B1_Mm SINE Alu 0 147 1 6 691 342 0 0 0 chr12 13946025 13946063 -107311467 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 691 239 333 20 40 chr12 13947163 13947313 -107310217 - Lx8 LINE L1 -260 7213 7067 6 691 205 349 82 60 chr12 13947379 13947773 -107309757 - L2c LINE L2 -9 3417 2998 6 691 416 298 21 0 chr12 13948687 13948781 -107308749 + B3 SINE B2 5 100 -116 6 691 414 0 0 0 chr12 13948793 13948839 -107308691 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 691 387 0 0 0 chr12 13948904 13948947 -107308583 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 691 1181 235 50 0 chr12 13949426 13949686 -107307844 + Lx6 LINE L1 6943 7215 -245 6 691 1814 141 3 32 chr12 13949683 13950021 -107307509 - L1_Mm LINE L1 -448 5435 5108 6 691 2889 117 2 0 chr12 13950021 13950457 -107307073 + L1_Mm LINE L1 5436 5872 -11 6 691 308 223 68 0 chr12 13950473 13950576 -107306954 + Lx6 LINE L1 7351 7460 0 6 691 419 298 106 62 chr12 13952494 13952673 -107304857 - MER20 DNA MER1_type -2 217 31 6 691 1074 144 123 10 chr12 13952673 13952876 -107304654 + URR1A DNA MER1_type 1 226 0 6 691 409 317 97 45 chr12 13952944 13953274 -107304256 - Lx8 LINE L1 -9 7464 7118 6 691 247 317 0 10 chr12 13953813 13953915 -107303615 + CT-rich Low_complexity Low_complexity 2 102 0 6 691 420 231 13 136 chr12 13954117 13954272 -107303258 + B4A SINE B4 9 144 -148 6 691 233 286 14 28 chr12 13954224 13954296 -107303234 + PB1D10 SINE Alu 12 82 -35 6 691 486 0 0 0 chr12 13954308 13954362 -107303168 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 691 2183 178 0 16 chr12 13955200 13955588 -107301942 - RLTR14 LTR ERV1 0 382 1 6 691 635 298 41 59 chr12 13955648 13956010 -107301520 + ORR1E LTR MaLR 6 379 0 6 691 367 373 48 48 chr12 13956478 13956771 -107300759 + L2 LINE L2 2673 2965 -454 6 691 375 338 13 44 chr12 13957399 13957557 -107299973 + MER82 DNA MER2_type 8 160 -493 6 691 358 303 218 6 chr12 13957629 13957860 -107299670 - B4A SINE B4 0 292 10 6 691 725 321 97 32 chr12 13957872 13958245 -107299285 + MER82 DNA MER2_type 156 552 -101 6 691 339 286 123 47 chr12 13958857 13959352 -107298178 + L1MEc LINE L1 652 1184 -5216 6 691 882 236 282 40 chr12 13959558 13959884 -107297646 + MTD LTR MaLR 1 405 -14 6 691 305 298 86 21 chr12 13960210 13960501 -107297029 + L1MEc LINE L1 2161 2470 -3930 6 691 507 285 36 7 chr12 13960724 13960862 -107296668 + B4A SINE B4 131 272 -20 6 691 387 0 0 0 chr12 13960893 13960936 -107296594 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 691 699 129 0 0 chr12 13960936 13961068 -107296462 + (GA)n Simple_repeat Simple_repeat 1 132 0 6 691 255 242 197 61 chr12 13961176 13961308 -107296222 - B3A SINE B2 -44 154 5 6 691 267 379 21 0 chr12 13961319 13961414 -107296116 + MTE2b LTR MaLR 120 216 -163 6 691 24 0 0 0 chr12 13961417 13961441 -107296089 + AT_rich Low_complexity Low_complexity 1 24 0 6 691 1173 114 51 0 chr12 13961444 13961620 -107295910 - B2_Mm2 SINE B2 -9 186 2 6 691 1297 236 52 48 chr12 13961620 13962020 -107295510 - Lx5 LINE L1 -5 7045 6644 6 691 271 231 15 15 chr12 13962225 13962291 -107295239 + MTE2b LTR MaLR 306 371 -8 6 691 244 268 38 61 chr12 13962359 13962490 -107295040 + L1MEc LINE L1 3971 4098 -2221 6 691 332 268 68 27 chr12 13962766 13962912 -107294618 + Lx8 LINE L1 7199 7350 -123 6 691 750 302 78 46 chr12 13962948 13963693 -107293837 - L1MDa LINE L1 -3233 3773 3005 6 691 582 333 89 86 chr12 13963712 13963768 -107293762 - L1MDa LINE L1 -4122 2980 2925 6 691 4344 12 0 0 chr12 13963768 13964250 -107293280 - LTRIS_Mm LTR ERV1 0 482 1 6 691 582 331 77 76 chr12 13964250 13964870 -107292660 - L1MDa LINE L1 -4178 2924 2232 6 691 1099 88 0 33 chr12 13964870 13965022 -107292508 - B1_Mus1 SINE Alu 0 148 2 6 691 400 327 42 46 chr12 13965022 13965097 -107292433 - L1MDa LINE L1 -5103 2231 2160 6 691 264 225 11 43 chr12 13965382 13965475 -107292055 - L1MDa LINE L1 -5086 1923 1834 6 691 419 224 141 115 chr12 13965539 13965731 -107291799 - B3A SINE B2 0 198 2 6 691 207 0 0 0 chr12 13965883 13965906 -107291624 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 691 564 312 58 88 chr12 13965917 13966177 -107291353 - RLTR17 LTR ERVK -336 356 105 6 691 207 88 0 0 chr12 13966215 13966249 -107291281 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 691 1371 207 93 25 chr12 13966249 13966360 -107291170 - RMER3D-int LTR ERVK -4 2838 2731 6 691 1101 91 0 33 chr12 13966360 13966542 -107290988 - L1Md_F2 LINE L1 -2 6580 6405 6 691 1561 196 55 41 chr12 13966542 13967202 -107290328 - RMER3D-int LTR ERVK -112 2730 1988 6 691 978 200 32 114 chr12 13967197 13967513 -107290017 - RMER3D-int LTR ERVK -1136 1706 1417 6 691 482 181 0 12 chr12 13967513 13967597 -107289933 - RLTR17 LTR ERVK -267 425 343 6 691 315 261 107 10 chr12 13967637 13967760 -107289770 - MLT1B LTR MaLR -241 133 4 6 691 713 311 98 4 chr12 13967997 13968262 -107289268 - B4 SINE B4 -2 290 1 6 691 335 343 28 14 chr12 13969003 13969144 -107288386 - MIR3 SINE MIR -5 203 61 6 691 198 355 16 98 chr12 13969144 13969266 -107288264 + MIR SINE MIR 3 114 -148 6 691 252 122 0 0 chr12 13969290 13969331 -107288199 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 691 289 312 21 0 chr12 13969358 13969451 -107288079 - B3A SINE B2 -103 95 1 6 691 1868 133 15 44 chr12 13970584 13970923 -107286607 + Lx2 LINE L1 6668 6996 -1 6 691 271 307 21 124 chr12 13971819 13971964 -107285566 - L2c LINE L2 -15 3372 3243 6 691 756 285 75 38 chr12 13971987 13972253 -107285277 + B4A SINE B4 1 276 -16 6 691 387 208 0 0 chr12 13972286 13972406 -107285124 + (CA)n Simple_repeat Simple_repeat 2 121 0 6 691 2314 43 36 13 chr12 13973311 13973620 -107283910 + L1Md_F3 LINE L1 6269 6584 0 6 691 222 292 62 85 chr12 13973650 13973826 -107283704 - L2a LINE L2 -56 3370 3199 6 691 333 337 0 0 chr12 13974481 13974567 -107282963 - PB1D10 SINE Alu -31 86 1 6 691 462 291 82 116 chr12 13974697 13974919 -107282611 - Lx8 LINE L1 -6 7467 7246 6 691 1160 75 0 7 chr12 13974919 13975067 -107282463 - B1_Mus2 SINE Alu 0 147 1 6 691 462 291 82 116 chr12 13975067 13975163 -107282367 - Lx8 LINE L1 -228 7245 7160 6 691 1728 161 0 7 chr12 13975273 13975554 -107281976 + RLTR17 LTR ERVK 1 279 -413 6 691 363 164 0 32 chr12 13975575 13975638 -107281892 + RLTR17 LTR ERVK 501 561 0 6 691 965 236 77 66 chr12 13975638 13975711 -107281819 + RMER3D-int LTR ERVK 1 66 -2776 6 691 303 28 0 0 chr12 13975711 13975747 -107281783 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 691 965 221 38 52 chr12 13975747 13976205 -107281325 + RMER3D-int LTR ERVK 67 851 -1991 6 691 6373 185 57 65 chr12 13976282 13978062 -107279468 + RMER3D-int LTR ERVK 1015 2792 -50 6 691 1462 63 19 19 chr12 13978062 13978272 -107279258 - L1_Mus1 LINE L1 -1 6566 6357 6 691 6373 185 57 65 chr12 13978272 13978332 -107279198 + RMER3D-int LTR ERVK 2793 2841 -1 6 691 3759 157 41 21 chr12 13978332 13979008 -107278522 + RLTR17 LTR ERVK 3 692 0 6 691 534 308 36 48 chr12 13979171 13979393 -107278137 + B3A SINE B2 1 216 0 6 691 265 299 113 0 chr12 13979607 13979704 -107277826 + MIR SINE MIR 81 188 -74 6 691 765 239 114 51 chr12 13981504 13981527 -107276003 - B4A SINE B4 -2 290 271 6 691 366 23 0 0 chr12 13981527 13981570 -107275960 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 691 765 239 114 51 chr12 13981570 13981819 -107275711 - B4A SINE B4 -22 270 1 6 691 21 71 0 0 chr12 13982238 13982280 -107275250 + AT_rich Low_complexity Low_complexity 1 42 0 6 691 496 333 14 0 chr12 13983607 13983754 -107273776 - RSINE1 SINE B4 -2 163 15 6 691 27 0 0 0 chr12 13983932 13983959 -107273571 + AT_rich Low_complexity Low_complexity 1 27 0 6 691 228 250 133 20 chr12 13984080 13984178 -107273352 + BLACKJACK DNA AcHobo 2221 2329 -615 6 691 1032 248 79 24 chr12 13984722 13985052 -107272478 - Lx6 LINE L1 -21 7439 7092 6 691 1113 113 0 0 chr12 13985803 13985971 -107271559 + (CATATA)n Simple_repeat Simple_repeat 2 169 0 6 691 225 119 0 0 chr12 13986340 13986382 -107271148 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 691 577 248 0 31 chr12 13987313 13987442 -107270088 - B1_Mur2 SINE Alu -1 148 24 6 691 348 24 0 0 chr12 13987595 13987636 -107269894 + (T)n Simple_repeat Simple_repeat 1 41 0 6 691 22 0 0 0 chr12 13987636 13987658 -107269872 + AT_rich Low_complexity Low_complexity 1 22 0 6 691 272 47 0 23 chr12 13987764 13987776 -107269754 - Lx3_Mus LINE L1 -1089 5920 5909 6 691 6389 11 0 0 chr12 13987776 13988488 -107269042 - L1Md_T LINE L1 0 6582 5871 6 691 272 47 0 23 chr12 13988488 13988519 -107269011 - Lx3_Mus LINE L1 -1101 5908 5878 6 691 280 33 0 6 chr12 13988489 13988534 -107268996 - L1Md_T LINE L1 -675 5907 5864 6 691 959 274 88 30 chr12 13989066 13989405 -107268125 - ORR1E LTR MaLR 0 359 1 6 691 322 315 126 11 chr12 13990780 13990963 -107266567 + MIRc SINE MIR 47 250 -18 6 691 1277 288 22 27 chr12 13991682 13992171 -107265359 + Lx6 LINE L1 6948 7434 -26 6 691 465 66 0 0 chr12 13992171 13992232 -107265298 + (ATG)n Simple_repeat Simple_repeat 2 62 0 6 691 1224 147 25 0 chr12 13992420 13992618 -107264912 + URR1A DNA MER1_type 24 226 0 6 691 25 0 0 0 chr12 13992909 13992934 -107264596 + AT_rich Low_complexity Low_complexity 1 25 0 6 691 372 316 60 0 chr12 13993208 13993341 -107264189 + B1F SINE Alu 3 143 -6 6 691 1708 232 45 9 chr12 13995447 13995887 -107261643 - Lx2B LINE L1 0 7000 6545 6 691 3031 149 7 29 chr12 13995881 13996468 -107261062 + L1_Mur2 LINE L1 4428 5001 -876 6 691 780 59 244 8 chr12 13996859 13996978 -107260552 - B1_Mus1 SINE Alu 0 148 2 6 691 458 104 0 25 chr12 13997802 13997881 -107259649 + (CGGGA)n Simple_repeat Simple_repeat 5 81 0 6 691 9144 10 0 0 chr12 13998209 13999999 -107257531 - L1Md_T LINE L1 0 6582 4793 6 691 27039 39 2 0 chr12 14000000 14005275 -107252255 - L1Md_Gf LINE L1 -1092 4794 1 1 691 213 293 91 26 chr12 14005305 14005382 -107252148 + L2c LINE L2 3272 3353 -34 2 691 182 37 0 36 chr12 14005664 14005692 -107251838 + (TCTCCC)n Simple_repeat Simple_repeat 4 30 0 3 691 461 338 92 36 chr12 14005752 14006001 -107251529 - B4 SINE B4 -14 278 16 4 691 263 156 77 139 chr12 14006046 14006255 -107251275 - RMER17C LTR ERVK -135 275 80 5 691 245 51 0 25 chr12 14006525 14006565 -107250965 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 691 236 271 123 36 chr12 14007612 14007750 -107249780 - MIRc SINE MIR -5 263 114 7 691 226 323 71 30 chr12 14007886 14007985 -107249545 - MIRc SINE MIR -152 116 14 7 691 259 119 0 0 chr12 14008093 14008125 -107249405 - URR1B DNA MER1_type -8 217 186 8 691 994 222 28 9 chr12 14008125 14008343 -107249187 - URR1B DNA MER1_type -3 222 1 8 691 2322 250 78 64 chr12 14009822 14010711 -107246819 - RCHARR1 DNA MER1_type -23 951 51 9 691 474 316 9 169 chr12 14010953 14011284 -107246246 - B4 SINE B4 -14 278 1 1 691 186 43 0 0 chr12 14013209 14013232 -107244298 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 691 942 304 126 32 chr12 14013529 14014149 -107243381 - L1MC1 LINE L1 0 6333 5668 1 691 3121 70 2 2 chr12 14014149 14014549 -107242981 - MTB LTR MaLR 0 400 1 1 691 942 299 154 29 chr12 14014549 14015082 -107242448 - L1MC1 LINE L1 -666 5667 5055 1 691 228 252 168 67 chr12 14015247 14015366 -107242164 + L1ME1 LINE L1 5852 5982 -197 1 691 827 261 43 5 chr12 14015508 14015716 -107241814 + B3 SINE B2 1 216 0 1 691 235 345 40 48 chr12 14016555 14016680 -107240850 - MIRb SINE MIR -49 219 96 1 691 2693 167 23 11 chr12 14017006 14017484 -107240046 + RLTR31_Mm LTR ERVK 1 484 -77 1 691 751 192 45 26 chr12 14017451 14017606 -107239924 - ORR1D1 LTR MaLR -211 163 6 1 691 4002 117 3 10 chr12 14017926 14018516 -107239014 - Lx LINE L1 -6 6648 6063 1 691 935 172 20 82 chr12 14018778 14019035 -107238495 + Lx LINE L1 6372 6591 -63 2 691 328 261 17 8 chr12 14019037 14019157 -107238373 - L1M5 LINE L1 -456 5668 5548 2 691 1189 194 61 8 chr12 14020665 14021051 -107236479 - RLTR31A_Mm LTR ERVK 0 557 152 2 691 441 0 0 0 chr12 14021776 14021825 -107235705 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 691 2458 186 30 17 chr12 14022361 14022677 -107234853 + RLTR28B LTR ERVL 1 321 -160 2 691 4891 90 18 3 chr12 14022677 14023347 -107234183 + Lx3_Mus LINE L1 6330 7009 0 2 691 2458 186 30 17 chr12 14023347 14023505 -107234025 + RLTR28B LTR ERVL 322 480 -1 2 86 8158 24 0 0 chr12 14023672 14024711 -107232819 - L1Md_T LINE L1 0 6582 5544 2 692 662 239 73 5 chr12 14024929 14025196 -107232334 - L1MA4A LINE L1 -1504 5969 5689 2 692 459 308 63 34 chr12 14025692 14025891 -107231639 + MER2 DNA MER2_type 17 221 -124 2 692 632 294 75 16 chr12 14025891 14026078 -107231452 + B3A SINE B2 1 198 0 2 692 287 341 66 0 chr12 14026102 14026193 -107231337 + MER2 DNA MER2_type 248 344 -1 2 692 196 385 115 0 chr12 14028670 14028766 -107228764 - MIRc SINE MIR -126 142 36 3 692 206 342 35 18 chr12 14028829 14028942 -107228588 - MIR SINE MIR -103 159 45 3 692 330 276 18 79 chr12 14030094 14030208 -107227322 + PB1D10 SINE Alu 1 107 -10 3 692 233 151 19 0 chr12 14030209 14030262 -107227268 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 3 692 251 357 79 0 chr12 14031154 14031280 -107226250 - MLT1C LTR MaLR -132 335 200 3 692 656 318 99 0 chr12 14031371 14031623 -107225907 - B4 SINE B4 -14 278 2 3 692 242 347 51 51 chr12 14031626 14031802 -107225728 - MLT1C LTR MaLR -270 197 22 3 692 432 394 51 8 chr12 14032214 14032470 -107225060 + L4 LINE RTE 1463 1729 -300 3 692 21 36 0 0 chr12 14032876 14032904 -107224626 + AT_rich Low_complexity Low_complexity 1 28 0 3 692 233 75 25 0 chr12 14033614 14033654 -107223876 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 3 692 1223 274 108 14 chr12 14034902 14035272 -107222258 + MTD LTR MaLR 1 405 -14 3 692 892 255 101 91 chr12 14035672 14036047 -107221483 + MTE2b LTR MaLR 1 379 0 4 692 331 279 77 0 chr12 14036599 14036703 -107220827 + MLT1B LTR MaLR 4 115 -275 4 692 484 170 56 19 chr12 14037540 14037648 -107219882 + ORR1D1 LTR MaLR 263 374 0 4 692 198 268 0 35 chr12 14037958 14038132 -107219398 + (CCCTAA)n Simple_repeat Simple_repeat 5 172 0 4 692 204 135 27 0 chr12 14038150 14038187 -107219343 + (CCCTAA)n Simple_repeat Simple_repeat 5 42 0 4 692 272 341 69 74 chr12 14039707 14039938 -107217592 + LTR79 LTR ERVL 298 527 0 4 692 3429 223 17 8 chr12 14040639 14041424 -107216106 + Lx2B LINE L1 6206 6997 -3 4 692 7750 82 2 2 chr12 14041482 14043005 -107214525 + L1_Mus3 LINE L1 5111 6635 -3 4 692 513 32 0 0 chr12 14043021 14043084 -107214446 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 692 252 148 0 0 chr12 14043086 14043147 -107214383 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 4 692 571 366 66 25 chr12 14043164 14043408 -107214122 - B4A SINE B4 -19 273 20 4 692 824 287 0 0 chr12 14043420 14043629 -107213901 - B3 SINE B2 -7 209 1 5 692 402 115 0 0 chr12 14043652 14043713 -107213817 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 692 391 331 0 44 chr12 14044374 14044510 -107213020 - LTR16B2 LTR ERVL -332 130 1 5 692 216 303 76 33 chr12 14045116 14045208 -107212322 + L2a LINE L2 3330 3425 -1 5 692 532 324 103 11 chr12 14045687 14045862 -107211668 + ID_B1 SINE B4 24 214 -10 5 692 420 20 0 0 chr12 14045862 14045911 -107211619 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 5 692 1018 71 47 6 chr12 14045926 14046097 -107211433 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 5 692 190 91 91 0 chr12 14046109 14046153 -107211377 + GA-rich Low_complexity Low_complexity 2 49 0 5 692 1053 281 67 41 chr12 14046549 14046891 -107210639 + MTEa LTR MaLR 2 352 -27 5 692 450 281 15 23 chr12 14046932 14047063 -107210467 - B3A SINE B2 -46 152 23 5 692 221 118 0 19 chr12 14047071 14047123 -107210407 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 692 24 0 0 0 chr12 14047166 14047190 -107210340 + AT_rich Low_complexity Low_complexity 1 24 0 6 692 1831 47 77 0 chr12 14047321 14047555 -107209975 - L1_Mus1 LINE L1 -1 6566 6315 6 692 21 82 0 0 chr12 14048620 14048669 -107208861 + AT_rich Low_complexity Low_complexity 1 49 0 6 692 258 356 99 0 chr12 14048687 14048788 -107208742 + MIRm SINE MIR 41 151 -125 6 692 5396 158 25 13 chr12 14049205 14050482 -107207048 + L1VL4 LINE L1 467 1749 -1810 6 692 522 0 0 0 chr12 14050482 14050540 -107206990 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 692 5396 155 21 16 chr12 14050540 14050783 -107206747 + L1VL4 LINE L1 1750 2009 -1550 6 692 30575 82 11 16 chr12 14050786 14056025 -107201505 + L1Md_F2 LINE L1 371 5585 -298 6 692 7299 79 10 5 chr12 14056026 14057013 -107200517 + L1Md_F2 LINE L1 5587 6578 -4 6 692 24 53 0 0 chr12 14057045 14057083 -107200447 + AT_rich Low_complexity Low_complexity 1 38 0 6 692 16282 160 17 8 chr12 14057086 14060054 -107197476 + L1_Mur1 LINE L1 2358 5353 -533 6 692 402 134 12 12 chr12 14060074 14060157 -107197373 + Lx2B LINE L1 6914 6996 -4 7 692 247 127 0 31 chr12 14061654 14061719 -107195811 + A-rich Low_complexity Low_complexity 3 65 0 7 692 283 298 36 0 chr12 14061818 14061902 -107195628 - MER20 DNA MER1_type -40 179 93 7 692 209 353 82 23 chr12 14062023 14062194 -107195336 + MIRb SINE MIR 42 222 -46 7 692 202 354 0 15 chr12 14063298 14063364 -107194166 + MIRb SINE MIR 8 72 -196 7 692 540 0 0 0 chr12 14063813 14063873 -107193657 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 692 600 14 0 0 chr12 14063876 14063945 -107193585 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 692 549 317 68 19 chr12 14064011 14064217 -107193313 - ID_B1 SINE B4 -3 221 6 7 692 798 319 36 50 chr12 14065482 14065759 -107191771 + B4A SINE B4 8 280 -12 7 692 498 75 0 0 chr12 14065766 14065833 -107191697 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 692 718 73 0 18 chr12 14065849 14065961 -107191569 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 8 692 204 188 0 0 chr12 14065961 14065993 -107191537 + (CCTG)n Simple_repeat Simple_repeat 2 33 0 8 692 510 17 0 0 chr12 14067120 14067179 -107190351 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 692 237 343 30 0 chr12 14067802 14067901 -107189629 - MIRb SINE MIR -92 176 75 8 692 355 151 23 0 chr12 14068012 14068098 -107189432 - Lx2 LINE L1 0 6997 6910 8 692 540 347 50 27 chr12 14068715 14068934 -107188596 + MER58A DNA MER1_type 1 224 0 8 692 633 101 10 82 chr12 14069225 14069419 -107188111 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 8 692 219 182 0 43 chr12 14070516 14070562 -107186968 - L3 LINE CR1 -2453 2036 1993 8 692 21 71 0 0 chr12 14070984 14071026 -107186504 + AT_rich Low_complexity Low_complexity 1 42 0 8 692 180 77 0 0 chr12 14072718 14072744 -107184786 + (TCTCTG)n Simple_repeat Simple_repeat 3 28 0 8 692 22 0 0 0 chr12 14073714 14073736 -107183794 + AT_rich Low_complexity Low_complexity 1 22 0 9 692 4684 178 34 20 chr12 14075681 14076565 -107180965 - RMER19B LTR ERVK -6 896 1 9 692 546 245 0 0 chr12 14077299 14077393 -107180137 + B3 SINE B2 3 96 -120 9 692 6033 86 16 1 chr12 14077395 14078211 -107179319 - L1_Mus3 LINE L1 -1 6637 5810 9 692 1510 70 30 0 chr12 14078211 14078410 -107179120 + L1_Mus3 LINE L1 5605 5809 -829 9 692 325 250 92 46 chr12 14078410 14078519 -107179011 + B3 SINE B2 84 197 -19 9 692 201 250 46 15 chr12 14079021 14079086 -107178444 - MIRb SINE MIR -141 127 61 9 692 22 0 0 0 chr12 14079297 14079319 -107178211 + AT_rich Low_complexity Low_complexity 1 22 0 9 692 342 115 0 0 chr12 14079359 14079411 -107178119 + (T)n Simple_repeat Simple_repeat 1 52 0 9 692 954 308 34 7 chr12 14080445 14080736 -107176794 + RMER15 LTR ERVL 277 575 0 9 692 462 314 51 0 chr12 14080769 14080906 -107176624 + B1F SINE Alu 6 149 0 9 692 195 139 0 0 chr12 14080919 14080955 -107176575 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 9 692 316 274 54 60 chr12 14081212 14081379 -107176151 - L1MEf LINE L1 -1883 4263 4098 1 692 300 268 282 5 chr12 14081630 14081903 -107175627 - L1MEf LINE L1 -2327 3819 3477 1 692 314 326 99 72 chr12 14081977 14082311 -107175219 - L1MEf LINE L1 -4325 1917 1575 1 692 350 347 106 11 chr12 14082453 14082908 -107174622 - L1MEf LINE L1 -4815 1427 930 1 692 315 241 0 0 chr12 14082948 14083031 -107174499 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 692 492 308 121 36 chr12 14083326 14083580 -107173950 - L1MA4 LINE L1 -362 5938 5651 1 692 873 247 143 3 chr12 14083580 14083901 -107173629 - ORR1D2 LTR MaLR -4 366 1 1 692 492 308 121 36 chr12 14083901 14084034 -107173496 - L1MA4 LINE L1 -650 5650 5518 1 692 321 224 54 48 chr12 14085484 14085618 -107171912 - MLT1J1 LTR MaLR -309 203 34 1 692 505 282 40 0 chr12 14085872 14085996 -107171534 + RSINE1 SINE B4 37 165 0 1 692 24 0 0 0 chr12 14086012 14086036 -107171494 + AT_rich Low_complexity Low_complexity 1 24 0 1 692 1148 159 81 14 chr12 14088368 14088496 -107169034 - URR1B DNA MER1_type 0 225 97 1 692 513 0 0 0 chr12 14088496 14088553 -107168977 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 692 1148 159 81 14 chr12 14088553 14088635 -107168895 - URR1B DNA MER1_type -129 96 3 1 692 216 0 0 0 chr12 14089553 14089577 -107167953 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 692 328 349 13 38 chr12 14090712 14090870 -107166660 - MTE2b LTR MaLR -225 154 1 1 692 246 286 12 18 chr12 14091765 14091930 -107165600 + CT-rich Low_complexity Low_complexity 1 163 0 1 692 234 0 0 0 chr12 14092267 14092293 -107165237 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 692 191 281 30 30 chr12 14093140 14093206 -107164324 - MIRm SINE MIR -2 274 209 1 692 181 234 43 0 chr12 14093253 14093300 -107164230 + L2b LINE L2 3326 3374 -1 1 692 464 86 14 0 chr12 14094235 14094305 -107163225 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 692 782 276 52 121 chr12 14094354 14094529 -107163001 - B4 SINE B4 -22 270 113 1 692 2139 188 143 8 chr12 14094529 14095034 -107162496 + RMER15 LTR ERVL 1 573 -2 1 692 782 276 52 121 chr12 14095034 14095147 -107162383 - B4 SINE B4 -180 112 2 1 692 396 0 0 0 chr12 14095463 14095507 -107162023 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 692 315 0 0 0 chr12 14095507 14095541 -107161989 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 692 222 37 0 0 chr12 14096389 14096416 -107161114 + (T)n Simple_repeat Simple_repeat 1 27 0 1 692 2575 14 0 0 chr12 14096485 14096779 -107160751 - L1Md_A LINE L1 0 6582 6289 1 692 225 0 0 0 chr12 14099030 14099055 -107158475 + (A)n Simple_repeat Simple_repeat 1 25 0 1 692 644 346 98 50 chr12 14099665 14100279 -107157251 - L2 LINE L2 -606 2813 2171 1 692 293 317 23 77 chr12 14100307 14100328 -107157202 - MTEa LTR MaLR -8 371 351 1 692 1179 181 42 0 chr12 14100328 14100543 -107156987 + URR1B DNA MER1_type 1 224 -1 1 692 326 342 49 100 chr12 14100543 14100848 -107156682 - MTEa LTR MaLR -29 350 42 1 692 504 0 0 0 chr12 14100976 14101032 -107156498 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1 692 216 289 326 0 chr12 14101108 14101243 -107156287 - L2 LINE L2 -1320 2099 1921 1 692 204 211 135 0 chr12 14101711 14101763 -107155767 + L3 LINE CR1 1264 1322 -3167 1 692 270 0 0 0 chr12 14103759 14103789 -107153741 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 692 32 43 0 0 chr12 14105519 14105565 -107151965 + AT_rich Low_complexity Low_complexity 1 46 0 1 692 238 87 43 0 chr12 14105582 14105628 -107151902 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 692 369 116 0 0 chr12 14105654 14105723 -107151807 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 692 333 68 0 0 chr12 14106796 14106840 -107150690 + (T)n Simple_repeat Simple_repeat 1 44 0 1 692 378 256 66 33 chr12 14107001 14107122 -107150408 + MIR SINE MIR 21 145 -63 1 692 1093 249 54 157 chr12 14107200 14107779 -107149751 - RMER20B LTR ERVK 0 516 1 1 692 315 214 0 0 chr12 14108847 14108917 -107148613 + T-rich Low_complexity Low_complexity 1 70 0 1 692 313 211 0 50 chr12 14109027 14109107 -107148423 + Lx7 LINE L1 6905 6980 -716 1 692 970 157 172 38 chr12 14109109 14109400 -107148130 + Lx7 LINE L1 7367 7696 0 1 692 23 54 0 0 chr12 14109402 14109439 -107148091 + AT_rich Low_complexity Low_complexity 1 37 0 1 692 775 306 85 35 chr12 14109465 14109614 -107147916 - MLT1C LTR MaLR -108 359 209 1 692 387 0 0 0 chr12 14109614 14109657 -107147873 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 692 775 306 85 35 chr12 14109657 14109849 -107147681 - MLT1C LTR MaLR -259 208 1 1 692 194 339 142 9 chr12 14110132 14110245 -107147285 + MIRc SINE MIR 10 137 -131 1 692 201 329 0 0 chr12 14110877 14110950 -107146580 + MIRb SINE MIR 96 168 -100 1 692 235 389 70 16 chr12 14111066 14111194 -107146336 - MIR3 SINE MIR -33 175 41 1 692 585 311 25 86 chr12 14111341 14111665 -107145865 + ORR1E LTR MaLR 49 352 -7 1 692 636 14 0 0 chr12 14111839 14111912 -107145618 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 692 1202 61 0 0 chr12 14111919 14112066 -107145464 - B1_Mus1 SINE Alu 0 148 2 1 692 888 119 0 18 chr12 14112091 14112427 -107145103 + (CA)n Simple_repeat Simple_repeat 1 329 0 1 692 194 306 102 31 chr12 14114019 14114147 -107143383 - MIRc SINE MIR -111 157 21 1 692 267 133 0 0 chr12 14114621 14114666 -107142864 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1 692 366 349 71 0 chr12 14115420 14115546 -107141984 - RSINE1 SINE B4 -28 137 3 1 692 393 22 0 0 chr12 14116041 14116087 -107141443 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 692 216 0 0 0 chr12 14116372 14116396 -107141134 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 692 998 172 143 62 chr12 14116837 14117159 -107140371 + RMER1B Other Other 719 1066 0 1 692 1094 88 0 6 chr12 14117272 14117433 -107140097 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 1 692 240 111 0 0 chr12 14117473 14117518 -107140012 + (T)n Simple_repeat Simple_repeat 1 45 0 1 692 2247 128 61 6 chr12 14117518 14117878 -107139652 - ORR1B1 LTR MaLR -14 380 1 1 692 27 62 0 0 chr12 14117900 14117948 -107139582 + AT_rich Low_complexity Low_complexity 1 48 0 1 692 512 231 65 89 chr12 14118698 14118912 -107138618 + Lx6 LINE L1 7226 7434 -26 1 692 579 345 26 0 chr12 14119965 14120159 -107137371 + MIR SINE MIR 23 221 -41 1 692 2475 158 62 94 chr12 14120283 14120877 -107136653 + RMER4B LTR ERVK 3 577 -8 1 692 465 66 0 0 chr12 14122866 14122927 -107134603 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 692 357 109 0 0 chr12 14122927 14122991 -107134539 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 692 505 325 92 50 chr12 14125405 14125765 -107131765 + L1MEg LINE L1 994 1368 -4716 1 692 7409 97 16 14 chr12 14126063 14127983 -107129547 + L1_Mus3 LINE L1 4712 6638 0 1 692 413 36 18 0 chr12 14128143 14128198 -107129332 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 692 583 297 54 35 chr12 14128354 14128612 -107128918 + Lx8 LINE L1 7185 7447 -26 1 692 28 71 0 0 chr12 14128612 14128668 -107128862 + AT_rich Low_complexity Low_complexity 1 56 0 1 692 320 0 0 24 chr12 14128751 14128792 -107128738 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 692 186 103 0 0 chr12 14129012 14129041 -107128489 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 692 324 367 101 26 chr12 14130048 14130395 -107127135 + L2a LINE L2 3036 3408 -18 1 692 385 316 51 57 chr12 14131205 14131363 -107126167 - MLT1J LTR MaLR -240 272 116 1 692 10328 141 10 12 chr12 14131461 14134099 -107123431 + Lx LINE L1 4019 6653 -1 1 692 714 285 122 38 chr12 14134432 14134720 -107122810 + MLT1A0 LTR MaLR 54 365 0 1 692 224 389 28 35 chr12 14134937 14135081 -107122449 - MIR3 SINE MIR -11 197 55 1 692 23 54 0 0 chr12 14135861 14135898 -107121632 + AT_rich Low_complexity Low_complexity 1 37 0 1 692 1339 259 52 3 chr12 14136025 14136374 -107121156 + MTEb LTR MaLR 14 379 0 1 692 21 0 0 0 chr12 14136517 14136538 -107120992 + AT_rich Low_complexity Low_complexity 1 21 0 1 692 21 0 0 0 chr12 14136643 14136664 -107120866 + AT_rich Low_complexity Low_complexity 1 21 0 1 692 234 0 0 0 chr12 14137156 14137182 -107120348 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 1 692 3339 67 19 44 chr12 14137224 14137706 -107119824 + L1_Mus3 LINE L1 6163 6632 -6 1 692 235 288 113 8 chr12 14138800 14138933 -107118597 - MLT1A1 LTR MaLR -247 161 15 1 692 286 159 29 0 chr12 14139333 14139402 -107118128 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 692 407 379 49 3 chr12 14139424 14139710 -107117820 + L1ME4a LINE L1 5611 5909 -215 1 692 826 275 19 4 chr12 14140161 14140385 -107117145 - MLT1A0 LTR MaLR -12 396 170 1 692 955 163 148 0 chr12 14140618 14140814 -107116716 - URR1B DNA MER1_type 0 225 1 1 692 1401 286 64 21 chr12 14141262 14141776 -107115754 - Lx8 LINE L1 -8 7465 6930 1 692 312 253 0 0 chr12 14141822 14141909 -107115621 - Lx8 LINE L1 -624 6849 6763 1 692 502 312 49 0 chr12 14141951 14142095 -107115435 - Lx8 LINE L1 -1106 6367 6217 1 692 1084 251 14 33 chr12 14142157 14142581 -107114949 - L1M2 LINE L1 -1443 4700 4285 1 692 22 56 0 0 chr12 14142623 14142659 -107114871 + AT_rich Low_complexity Low_complexity 1 36 0 1 692 1311 58 0 0 chr12 14142659 14142830 -107114700 + L1Md_F2 LINE L1 5416 5586 -297 1 692 7459 73 10 1 chr12 14142830 14143804 -107113726 + L1Md_F2 LINE L1 5587 6569 -13 1 692 309 395 19 0 chr12 14143895 14144057 -107113473 - RSINE1 SINE B4 0 165 1 1 692 589 294 72 61 chr12 14144699 14144978 -107112552 - B4 SINE B4 -10 282 1 1 692 22 0 0 0 chr12 14145435 14145457 -107112073 + AT_rich Low_complexity Low_complexity 1 22 0 1 692 1580 282 64 40 chr12 14146735 14147392 -107110138 - Lx8 LINE L1 -143 7330 6658 1 692 1043 250 68 46 chr12 14147392 14147715 -107109815 + Lx8 LINE L1 6339 6668 -805 1 692 556 283 23 51 chr12 14147776 14147951 -107109579 + ID_B1 SINE B4 50 219 -5 1 692 192 40 0 0 chr12 14151434 14151459 -107106071 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1 692 340 305 0 92 chr12 14152238 14152368 -107105162 + PB1D9 SINE Alu 1 118 -2 1 692 402 21 0 0 chr12 14152418 14152465 -107105065 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 692 252 0 0 0 chr12 14152625 14152653 -107104877 + (T)n Simple_repeat Simple_repeat 1 28 0 1 692 414 0 0 0 chr12 14152693 14152739 -107104791 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 692 23 54 0 0 chr12 14153098 14153135 -107104395 + AT_rich Low_complexity Low_complexity 1 37 0 1 692 207 0 0 0 chr12 14153751 14153774 -107103756 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 692 360 0 0 0 chr12 14153911 14153951 -107103579 + (A)n Simple_repeat Simple_repeat 1 40 0 2 692 209 214 0 18 chr12 14154732 14154789 -107102741 + A-rich Low_complexity Low_complexity 2 57 0 2 693 180 262 0 0 chr12 14155820 14155862 -107101668 - L2 LINE L2 -544 2875 2834 2 693 208 250 0 0 chr12 14157723 14157763 -107099767 + polypurine Low_complexity Low_complexity 2 41 0 2 693 477 0 0 0 chr12 14158463 14158516 -107099014 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 693 357 125 0 0 chr12 14159213 14159269 -107098261 + (A)n Simple_repeat Simple_repeat 1 56 0 2 693 342 61 0 0 chr12 14159898 14159947 -107097583 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 2 693 287 274 0 35 chr12 14159951 14160038 -107097492 + CT-rich Low_complexity Low_complexity 6 89 0 2 693 1176 164 89 193 chr12 14160712 14161127 -107096403 + ORR1D1 LTR MaLR 3 374 0 2 693 230 191 30 60 chr12 14161976 14162043 -107095487 + MIR SINE MIR 106 170 -92 2 693 324 367 48 48 chr12 14162887 14163116 -107094414 + MLT1J2 LTR MaLR 206 434 -14 2 693 1021 169 33 0 chr12 14163736 14163920 -107093610 + URR1A DNA MER1_type 37 226 0 2 693 920 234 109 113 chr12 14163946 14164318 -107093212 - MT2A LTR ERVL -101 500 1 2 693 181 307 172 17 chr12 14164340 14164456 -107093074 + MER5A DNA MER1_type 30 163 -26 2 693 371 107 0 35 chr12 14164811 14164869 -107092661 + (TTCTC)n Simple_repeat Simple_repeat 4 59 0 2 693 588 111 0 0 chr12 14164870 14164960 -107092570 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 2 693 1147 71 0 0 chr12 14164962 14165102 -107092428 - B1_Mus2 SINE Alu -7 140 1 2 693 392 239 6 28 chr12 14165238 14165419 -107092111 + CT-rich Low_complexity Low_complexity 2 178 0 2 693 219 287 26 44 chr12 14165431 14165544 -107091986 + CT-rich Low_complexity Low_complexity 5 115 0 2 693 189 0 0 0 chr12 14166062 14166083 -107091447 + (T)n Simple_repeat Simple_repeat 1 21 0 2 693 210 424 16 28 chr12 14166121 14166192 -107091338 + MIRb SINE MIR 50 121 -147 2 693 1154 88 0 0 chr12 14166192 14166339 -107091191 - B1_Mus2 SINE Alu 0 147 1 2 693 210 424 16 28 chr12 14166339 14166449 -107091081 + MIRb SINE MIR 122 229 -39 2 693 519 144 0 0 chr12 14166906 14167003 -107090527 + (TC)n Simple_repeat Simple_repeat 1 97 0 2 693 464 348 105 45 chr12 14167336 14167670 -107089860 - MLT1A0 LTR MaLR -1 364 11 2 693 234 0 0 0 chr12 14167849 14167875 -107089655 + (T)n Simple_repeat Simple_repeat 1 26 0 2 693 1133 188 18 0 chr12 14169087 14169305 -107088225 + URR1B DNA MER1_type 2 223 -2 2 693 867 246 135 36 chr12 14169864 14170138 -107087392 + MTE2a LTR MaLR 1 301 -78 2 693 1594 282 29 63 chr12 14170683 14171236 -107086294 - RMER5 LTR ERV1 0 534 1 2 693 549 88 0 0 chr12 14173022 14173102 -107084428 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 693 338 91 18 0 chr12 14173128 14173183 -107084347 + (TATG)n Simple_repeat Simple_repeat 1 56 0 2 693 494 288 19 160 chr12 14174559 14174877 -107082653 + B4A SINE B4 2 274 -18 2 693 360 356 54 70 chr12 14177217 14177459 -107080071 - Tigger5 DNA MER2_type -2161 245 8 2 693 550 193 0 0 chr12 14177740 14177828 -107079702 - B3 SINE B2 -128 88 1 2 693 254 235 23 23 chr12 14179281 14179308 -107078222 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 693 1703 221 179 2 chr12 14179308 14179761 -107077769 + MT2A LTR ERVL 1 533 0 2 693 254 235 23 23 chr12 14179761 14179820 -107077710 + (CCAA)n Simple_repeat Simple_repeat 4 64 0 2 693 26 0 0 0 chr12 14179954 14179980 -107077550 + AT_rich Low_complexity Low_complexity 1 26 0 2 693 216 300 0 0 chr12 14180241 14180291 -107077239 + MIR3 SINE MIR 114 163 -45 2 693 739 305 22 1 chr12 14181945 14182152 -107075378 + B3 SINE B2 7 216 0 2 693 183 42 0 0 chr12 14182886 14182910 -107074620 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 693 361 176 303 25 chr12 14182912 14183034 -107074496 + RLTR22_Mur LTR ERVK 1669 1824 -24 2 693 260 85 0 41 chr12 14183048 14183097 -107074433 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2 693 1791 36 0 5 chr12 14183149 14183370 -107074160 - L1Md_F3 LINE L1 -2 6582 6363 2 693 4227 227 83 53 chr12 14183399 14183958 -107073572 - RMER12 LTR ERVK -1 1847 769 2 693 324 70 0 0 chr12 14183958 14184001 -107073529 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 2 693 4227 222 75 32 chr12 14184001 14184747 -107072783 - RMER12 LTR ERVK -554 768 2 2 693 472 295 82 16 chr12 14184795 14185098 -107072432 - MER33 DNA MER1_type -1 323 1 2 693 490 333 111 68 chr12 14187121 14187401 -107070129 + B4A SINE B4 1 292 0 2 693 616 309 24 28 chr12 14188367 14188580 -107068950 + B4A SINE B4 1 212 -80 2 693 439 207 7 7 chr12 14188659 14188795 -107068735 + GA-rich Low_complexity Low_complexity 2 137 0 2 693 180 276 100 50 chr12 14188846 14188926 -107068604 + L2b LINE L2 3243 3326 -49 2 693 1368 67 0 0 chr12 14189277 14189457 -107068073 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 693 213 356 85 62 chr12 14189929 14190189 -107067341 + L4 LINE RTE 1764 2029 0 2 693 349 312 71 14 chr12 14190411 14190551 -107066979 + B1F SINE Alu 1 148 -1 2 693 564 336 107 0 chr12 14190651 14190895 -107066635 + B4A SINE B4 10 279 -13 2 693 321 26 0 0 chr12 14192119 14192157 -107065373 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 693 475 302 24 36 chr12 14192210 14192375 -107065155 - B4A SINE B4 -21 271 109 2 693 323 318 9 9 chr12 14192439 14192547 -107064983 - B4 SINE B4 -184 108 1 2 693 192 200 0 0 chr12 14193076 14193136 -107064394 + (TTAA)n Simple_repeat Simple_repeat 4 63 0 2 693 225 316 26 17 chr12 14195394 14195510 -107062020 + (CATATA)n Simple_repeat Simple_repeat 1 117 0 2 693 273 375 36 0 chr12 14195705 14195817 -107061713 - MIRm SINE MIR -123 153 38 2 693 654 25 0 0 chr12 14198353 14198433 -107059097 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 693 649 288 193 21 chr12 14199396 14199775 -107057755 - MLT1D LTR MaLR -46 459 16 2 693 306 367 48 41 chr12 14200785 14200930 -107056600 - RSINE1 SINE B4 -16 149 4 2 693 242 181 67 40 chr12 14202612 14202687 -107054843 - L2a LINE L2 -16 3410 3334 2 693 1039 102 7 0 chr12 14203542 14203689 -107053841 - B1_Mus1 SINE Alu 0 148 1 2 693 843 313 28 0 chr12 14204197 14204411 -107053119 - B4A SINE B4 -70 222 3 2 693 1009 354 71 33 chr12 14205421 14205642 -107051888 + MER70B LTR ERVL 9 235 -343 2 693 198 71 0 0 chr12 14205642 14205670 -107051860 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 2 693 1009 354 71 33 chr12 14205670 14205896 -107051634 + MER70B LTR ERVL 236 473 -105 2 693 699 288 99 59 chr12 14205896 14206097 -107051433 + MTEa LTR MaLR 2 210 -169 2 693 405 0 0 0 chr12 14206097 14206142 -107051388 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 693 279 0 0 0 chr12 14206142 14206172 -107051358 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 693 219 36 0 0 chr12 14206172 14206199 -107051331 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 693 699 288 99 59 chr12 14206199 14206298 -107051232 + MTEa LTR MaLR 211 314 -65 2 693 1149 48 7 0 chr12 14206300 14206445 -107051085 + B1_Mm SINE Alu 2 147 0 2 693 220 27 26 26 chr12 14206446 14206484 -107051046 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2 693 244 168 179 0 chr12 14208128 14208223 -107049307 - L1Md_F2 LINE L1 0 6582 6471 2 693 442 206 170 6 chr12 14209064 14209235 -107048295 - Lx9 LINE L1 -7 7637 7439 2 693 309 115 19 0 chr12 14209854 14209906 -107047624 + HAL1-3A_ME LINE L1 1976 2028 -830 2 693 348 153 0 0 chr12 14209906 14209991 -107047539 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 693 4396 42 0 4 chr12 14210133 14210654 -107046876 + MURVY-LTR LTR ERV1 1 519 0 2 693 2664 38 0 0 chr12 14210805 14211125 -107046405 - L1Md_A LINE L1 -1 6581 6262 2 693 257 269 30 0 chr12 14211279 14211346 -107046184 + ID4_ SINE ID 1 69 -14 2 693 600 332 26 30 chr12 14212711 14213015 -107044515 - RMER15 LTR ERVL -1 574 272 2 693 261 0 0 0 chr12 14213080 14213109 -107044421 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 693 271 188 15 59 chr12 14213112 14213180 -107044350 - RMER15 LTR ERVL -508 67 3 2 693 261 291 76 68 chr12 14213310 14213428 -107044102 - RMER30 DNA MER1_type -77 125 7 2 693 23 0 0 0 chr12 14214063 14214086 -107043444 + AT_rich Low_complexity Low_complexity 1 23 0 2 693 230 320 83 55 chr12 14214139 14214248 -107043282 + MIR3 SINE MIR 13 124 -84 2 693 457 197 306 37 chr12 14214646 14214888 -107042642 - Lx9 LINE L1 -1 7643 7337 2 693 544 350 18 42 chr12 14215722 14215889 -107041641 - RSINE1 SINE B4 0 165 3 2 693 414 0 0 0 chr12 14215904 14215950 -107041580 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 693 2556 173 60 73 chr12 14216527 14216857 -107040673 - RMER6C LTR ERVK 0 690 378 2 693 201 39 0 0 chr12 14216857 14216883 -107040647 + (CAACT)n Simple_repeat Simple_repeat 1 26 0 2 693 2556 173 60 73 chr12 14216883 14217251 -107040279 - RMER6C LTR ERVK -313 377 1 2 693 183 310 144 45 chr12 14217305 14217437 -107040093 - MIRb SINE MIR -108 160 16 2 693 453 36 0 0 chr12 14217518 14217573 -107039957 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 693 450 36 0 0 chr12 14218068 14218124 -107039406 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 693 180 0 0 0 chr12 14218712 14218732 -107038798 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 693 214 275 95 29 chr12 14220384 14220489 -107037041 - MIRc SINE MIR -31 237 126 2 693 601 330 120 52 chr12 14221121 14221562 -107035968 - MLT1D LTR MaLR -34 471 1 2 693 775 338 79 42 chr12 14222690 14222776 -107034754 + L2 LINE L2 2364 2444 -975 2 693 1192 256 29 57 chr12 14222776 14223161 -107034369 + MTEa LTR MaLR 3 376 -3 2 693 775 338 79 42 chr12 14223161 14223593 -107033937 + L2 LINE L2 2445 2901 -518 2 693 477 0 0 0 chr12 14224114 14224167 -107033363 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 693 482 345 42 24 chr12 14225242 14225530 -107032000 + LTR52 LTR ERVL 65 357 -64 3 693 2407 288 73 16 chr12 14225972 14226875 -107030655 + Lx8 LINE L1 6368 7322 -151 3 693 2177 212 72 24 chr12 14226885 14227383 -107030147 + RLTR11A LTR ERVK 7 528 0 3 693 273 226 54 74 chr12 14227388 14227536 -107029994 + Lx8 LINE L1 7327 7471 -2 3 693 209 389 9 17 chr12 14228647 14228762 -107028768 - MIR3 SINE MIR -23 185 72 3 693 22 35 0 0 chr12 14228779 14228808 -107028722 + AT_rich Low_complexity Low_complexity 1 29 0 3 693 1277 275 52 39 chr12 14228810 14229426 -107028104 - Lx9 LINE L1 -16 7628 7005 3 693 288 77 0 0 chr12 14229795 14229834 -107027696 + (T)n Simple_repeat Simple_repeat 1 39 0 3 693 293 322 85 7 chr12 14231477 14231630 -107025900 + MIR SINE MIR 92 256 -6 3 693 763 285 91 39 chr12 14232015 14232322 -107025208 - MLT1A0 LTR MaLR 0 365 43 3 693 2166 343 46 14 chr12 14234299 14235430 -107022100 + Lx8 LINE L1 6179 7345 -128 3 693 717 12 0 0 chr12 14235660 14235742 -107021788 + (TCCC)n Simple_repeat Simple_repeat 3 84 0 3 693 633 27 0 0 chr12 14235746 14235821 -107021709 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 3 693 285 342 18 48 chr12 14236800 14236966 -107020564 + RSINE1 SINE B4 5 165 0 3 693 841 270 88 27 chr12 14237131 14237496 -107020034 - Lx8 LINE L1 -11 7462 7076 3 693 611 323 47 77 chr12 14237559 14237921 -107019609 + MTD LTR MaLR 55 405 -14 3 693 297 335 99 10 chr12 14239288 14239490 -107018040 - L2a LINE L2 -5 3421 3202 3 693 497 324 70 57 chr12 14239575 14239875 -107017655 - B4A SINE B4 -11 281 6 3 693 1633 94 8 8 chr12 14240303 14240538 -107016992 + L1Md_F2 LINE L1 6348 6582 0 3 693 218 369 21 21 chr12 14241174 14241318 -107016212 - MIR SINE MIR -11 251 108 3 693 3641 105 8 2 chr12 14241677 14242204 -107015326 - L1_Mus3 LINE L1 0 6638 6109 3 693 28 0 0 0 chr12 14242633 14242661 -107014869 + AT_rich Low_complexity Low_complexity 1 28 0 3 693 378 0 0 0 chr12 14242672 14242714 -107014816 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 693 289 366 0 0 chr12 14242767 14242868 -107014662 - Lx8 LINE L1 -144 7329 7229 3 693 182 170 143 54 chr12 14242939 14242995 -107014535 + MIR SINE MIR 27 87 -121 3 693 291 289 96 0 chr12 14244436 14244540 -107012990 + MER115 DNA Tip100 501 614 -79 3 693 324 48 0 0 chr12 14244884 14244926 -107012604 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 3 693 697 230 35 40 chr12 14244962 14245188 -107012342 - Lx9 LINE L1 -164 7480 7256 3 693 210 118 0 0 chr12 14245193 14245227 -107012303 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 693 4534 93 19 12 chr12 14245229 14245901 -107011629 - L1_Mus3 LINE L1 -5 6633 5957 3 693 306 0 0 0 chr12 14245901 14245935 -107011595 + (TCC)n Simple_repeat Simple_repeat 2 35 0 3 693 2421 103 16 4 chr12 14245935 14246392 -107011138 - L1_Mus4 LINE L1 -882 6115 5635 3 693 222 62 0 0 chr12 14246453 14246485 -107011045 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 693 466 294 189 56 chr12 14246576 14246936 -107010594 + MLT1D LTR MaLR 98 505 0 3 693 21 0 0 0 chr12 14247579 14247600 -107009930 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 220 370 22 0 chr12 14247630 14247722 -107009808 - RSINE1 SINE B4 -69 96 3 3 693 1106 275 93 11 chr12 14247727 14248296 -107009234 - L1MA6 LINE L1 -355 5945 5330 3 693 454 254 88 15 chr12 14248313 14248449 -107009081 - B1_Mus2 SINE Alu 0 147 2 3 693 26 30 0 0 chr12 14248462 14248495 -107009035 + AT_rich Low_complexity Low_complexity 1 33 0 3 693 419 87 14 0 chr12 14248620 14248689 -107008841 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 693 600 183 109 25 chr12 14248697 14248899 -107008631 - L1MA6 LINE L1 -1038 5105 4887 3 693 377 366 16 24 chr12 14248991 14249117 -107008413 - RSINE1 SINE B4 -36 129 5 3 693 207 0 0 0 chr12 14249376 14249399 -107008131 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 693 204 40 0 0 chr12 14249430 14249455 -107008075 + (T)n Simple_repeat Simple_repeat 1 25 0 3 693 3139 39 7 37 chr12 14250002 14250406 -107007124 - MTA_Mm LTR MaLR -4 392 1 3 693 741 296 69 60 chr12 14250729 14251377 -107006153 - L1M2 LINE L1 -1911 4232 3579 3 693 269 264 11 22 chr12 14251398 14251487 -107006043 + CT-rich Low_complexity Low_complexity 3 90 0 3 693 4531 69 2 5 chr12 14251906 14252490 -107005040 - L1_Mus1 LINE L1 0 6567 5986 3 693 1735 53 0 0 chr12 14252490 14252717 -107004813 + L1_Mus1 LINE L1 5740 5966 -601 3 693 285 29 0 0 chr12 14252805 14252839 -107004691 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 693 2687 86 51 49 chr12 14253068 14253498 -107004032 - L1Md_F2 LINE L1 0 6582 6152 3 693 286 241 46 0 chr12 14253754 14253835 -107003695 - PB1D10 SINE Alu -52 96 10 3 693 252 313 0 6 chr12 14253852 14253943 -107003587 - ID2 SINE ID -50 102 14 3 693 617 302 54 88 chr12 14254094 14254222 -107003308 - L1MB8 LINE L1 -21 6157 6042 3 693 1514 81 14 5 chr12 14254222 14254434 -107003096 - L1_Mus1 LINE L1 0 6567 6354 3 693 617 295 59 68 chr12 14254434 14255362 -107002168 - L1MB8 LINE L1 -137 6041 5129 3 693 423 98 0 0 chr12 14255453 14255514 -107002016 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 693 242 319 69 78 chr12 14255514 14255616 -107001914 - RSINE1 SINE B4 -56 109 9 3 693 261 0 0 0 chr12 14256009 14256038 -107001492 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 693 1163 43 0 0 chr12 14256038 14256176 -107001354 - B1_Mus1 SINE Alu -10 138 1 3 693 249 83 0 0 chr12 14256365 14256401 -107001129 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 693 789 294 108 8 chr12 14256907 14257288 -107000242 + MTD LTR MaLR 1 419 0 3 693 306 0 0 0 chr12 14258541 14258575 -106998955 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 693 1940 68 26 0 chr12 14258575 14258840 -106998690 - L1_Mus3 LINE L1 -19 6619 6348 3 693 954 237 4 18 chr12 14258859 14259087 -106998443 + URR1B DNA MER1_type 1 225 0 3 693 21 0 0 0 chr12 14259887 14259908 -106997622 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 324 0 0 0 chr12 14260022 14260058 -106997472 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 693 2330 73 3 57 chr12 14261300 14261636 -106995894 - L1_Mus2 LINE L1 0 6566 6249 3 693 446 103 44 0 chr12 14261665 14261733 -106995797 + B3A SINE B2 1 71 -127 3 693 1293 213 34 72 chr12 14261761 14262236 -106995294 + L1_Mur3 LINE L1 1669 2125 -3755 3 693 667 156 0 0 chr12 14262232 14262354 -106995176 - L1_Mur3 LINE L1 -1097 4783 4662 3 693 3465 234 97 14 chr12 14262356 14263450 -106994080 + Lx7 LINE L1 6252 7436 -37 3 693 201 121 0 0 chr12 14263508 14263541 -106993989 + (T)n Simple_repeat Simple_repeat 1 33 0 3 693 460 276 22 36 chr12 14263541 14263680 -106993850 + B3 SINE B2 76 212 -4 3 693 21 71 0 0 chr12 14265420 14265462 -106992068 + AT_rich Low_complexity Low_complexity 1 42 0 3 693 2401 306 68 30 chr12 14265631 14266782 -106990748 - Lx8 LINE L1 -3 7470 6277 3 693 759 228 0 0 chr12 14266925 14267070 -106990460 + B1_Mus1 SINE Alu 3 147 -1 3 693 2266 170 19 36 chr12 14268121 14268541 -106988989 + MTC LTR MaLR 1 413 -8 3 693 4169 189 128 25 chr12 14268549 14269570 -106987960 + MTC-int LTR MaLR 30 1155 -103 3 693 6455 56 29 9 chr12 14269579 14270455 -106987075 - L1_Mus1 LINE L1 -2 6565 5673 3 693 11860 69 18 0 chr12 14270452 14272111 -106985419 - L1_Mus1 LINE L1 -889 4994 3307 3 693 1995 87 49 7 chr12 14272111 14272399 -106985131 + L1Md_F2 LINE L1 6276 6575 -7 3 693 363 44 0 0 chr12 14272405 14272450 -106985080 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 3 693 2363 102 36 0 chr12 14272450 14272812 -106984718 - L1_Mm LINE L1 -206 5677 5303 3 693 352 210 0 0 chr12 14272812 14272893 -106984637 + MTC-int LTR MaLR 1175 1255 -3 3 693 517 183 11 0 chr12 14272896 14272989 -106984541 + MTC LTR MaLR 1 94 -327 3 693 732 231 0 0 chr12 14272991 14273121 -106984409 + B1_Mus2 SINE Alu 6 135 -12 3 693 1428 190 11 25 chr12 14273135 14273410 -106984120 + MTC LTR MaLR 151 421 0 3 693 182 370 29 73 chr12 14273431 14273499 -106984031 + MIRb SINE MIR 55 118 -150 3 693 987 188 86 5 chr12 14273499 14273708 -106983822 - URR1A DNA MER1_type 0 226 1 3 693 182 370 29 73 chr12 14273708 14273843 -106983687 + MIRb SINE MIR 119 249 -19 3 693 3293 36 15 8 chr12 14274131 14274524 -106983006 + MTA_Mm LTR MaLR 1 396 0 3 693 543 262 116 16 chr12 14275205 14275395 -106982135 + B3 SINE B2 6 214 -2 3 693 193 321 26 35 chr12 14275603 14275716 -106981814 - MIRb SINE MIR -95 173 62 3 693 184 213 64 0 chr12 14276027 14276074 -106981456 + L3 LINE CR1 1065 1114 -3375 3 693 4012 69 82 2 chr12 14276157 14276696 -106980834 - L1_Mus1 LINE L1 0 6567 5986 3 693 186 333 0 0 chr12 14277700 14277778 -106979752 + MIR3 SINE MIR 125 202 -6 3 693 751 344 96 25 chr12 14278059 14278536 -106978994 - Charlie13a DNA Charlie -554 960 450 3 693 23 92 0 0 chr12 14279213 14279278 -106978252 + AT_rich Low_complexity Low_complexity 1 65 0 3 693 285 83 35 35 chr12 14281296 14281383 -106976147 + T-rich Low_complexity Low_complexity 5 91 0 3 693 303 93 0 0 chr12 14282027 14282070 -106975460 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 693 549 331 27 0 chr12 14282483 14282667 -106974863 - MIRb SINE MIR -64 204 16 3 693 465 62 0 0 chr12 14283538 14283603 -106973927 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 3 693 301 260 48 0 chr12 14283925 14284029 -106973501 + MIR SINE MIR 80 188 -74 3 693 1386 143 17 21 chr12 14284039 14284274 -106973256 - Lx3C LINE L1 -413 6563 6330 3 693 662 192 102 17 chr12 14284265 14284449 -106973081 + Lx3C LINE L1 6791 6999 -1 3 693 570 245 0 93 chr12 14284483 14284645 -106972885 - B1_Mur1 SINE Alu 0 149 3 3 693 552 221 79 0 chr12 14284653 14284793 -106972737 - Lx9 LINE L1 -595 7049 6899 3 693 364 213 54 41 chr12 14284799 14284946 -106972584 + Lx9 LINE L1 7381 7529 -115 3 693 289 237 51 13 chr12 14285055 14285213 -106972317 + Lx9 LINE L1 7476 7639 -5 3 693 628 353 43 16 chr12 14285320 14285576 -106971954 + B4A SINE B4 3 265 -27 4 693 1110 130 0 0 chr12 14285596 14285773 -106971757 + (TTCTCC)n Simple_repeat Simple_repeat 4 180 0 4 693 968 154 6 0 chr12 14285794 14285969 -106971561 + CT-rich Low_complexity Low_complexity 1 176 0 4 693 260 287 13 0 chr12 14285982 14286136 -106971394 + (CA)n Simple_repeat Simple_repeat 1 156 0 4 693 27 0 0 0 chr12 14286136 14286163 -106971367 + AT_rich Low_complexity Low_complexity 1 27 0 4 694 326 304 43 106 chr12 14288290 14288478 -106969052 + MLT1D LTR MaLR 34 209 -296 4 694 281 245 90 20 chr12 14288674 14288774 -106968756 - B1F SINE Alu 0 149 43 4 694 354 267 33 33 chr12 14289288 14289408 -106968122 + PB1D7 SINE Alu 1 120 0 4 694 193 227 0 43 chr12 14289459 14289505 -106968025 - MER5B DNA MER1_type -76 102 59 4 694 484 99 14 0 chr12 14291959 14292030 -106965500 - L1_Mur1 LINE L1 -469 5417 5346 4 694 1127 136 11 0 chr12 14292682 14292858 -106964672 + B2_Mm1t SINE B2 2 179 -14 4 694 276 103 438 32 chr12 14292905 14293001 -106964529 + B2_Mm2 SINE B2 47 181 -14 4 694 440 285 124 18 chr12 14295957 14296182 -106961348 + Tigger7 DNA MER2_type 2243 2491 0 4 694 262 388 91 16 chr12 14296191 14296377 -106961153 - MIR SINE MIR -21 241 42 4 694 1088 184 13 30 chr12 14296756 14296986 -106960544 - URR1A DNA MER1_type 0 226 1 4 694 1316 288 83 34 chr12 14299922 14300505 -106957025 + Lx8 LINE L1 6877 7464 -9 4 694 435 291 35 7 chr12 14300528 14300670 -106956860 + MER3 DNA MER1_type 13 158 -51 4 694 247 350 59 10 chr12 14300682 14300783 -106956747 + MER5A1 DNA MER1_type 46 151 -15 4 694 331 355 51 34 chr12 14300801 14300979 -106956551 - MER5A DNA MER1_type -7 182 2 4 694 1068 133 18 0 chr12 14301115 14301280 -106956250 - Lx LINE L1 -189 6465 6298 4 694 778 167 0 6 chr12 14301284 14301447 -106956083 + Lx LINE L1 6490 6651 -3 4 694 24 0 0 0 chr12 14301846 14301870 -106955660 + AT_rich Low_complexity Low_complexity 1 24 0 4 694 531 157 161 23 chr12 14303775 14303905 -106953625 - B1_Mur3 SINE Alu 0 149 2 4 694 933 113 0 0 chr12 14303912 14304053 -106953477 + (TTTC)n Simple_repeat Simple_repeat 4 144 0 4 694 432 0 0 0 chr12 14304053 14304101 -106953429 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 4 694 765 61 0 0 chr12 14304103 14304202 -106953328 + (TTTC)n Simple_repeat Simple_repeat 3 101 0 4 694 298 306 100 0 chr12 14304357 14304537 -106952993 + L1M4 LINE L1 4023 4220 -1926 4 694 729 303 143 56 chr12 14304963 14305806 -106951724 + L1MA8 LINE L1 5256 6172 -119 4 694 364 283 35 9 chr12 14306788 14306902 -106950628 + MTEa LTR MaLR 259 375 -4 4 694 427 276 120 116 chr12 14306953 14307178 -106950352 + MLT1A1 LTR MaLR 118 343 -65 4 694 232 382 8 8 chr12 14308376 14308500 -106949030 + MLT1A1 LTR MaLR 433 556 -6 4 694 321 272 211 32 chr12 14308860 14309144 -106948386 + Charlie1a DNA MER1_type 48 381 -1074 4 694 605 308 55 4 chr12 14309307 14309542 -106947988 - MER119 DNA MER1_type -231 352 106 4 694 1019 309 118 39 chr12 14309632 14310426 -106947104 + Charlie1a DNA MER1_type 368 1224 -231 4 694 201 355 30 61 chr12 14310740 14310839 -106946691 - MIRc SINE MIR -154 114 19 4 694 311 88 0 17 chr12 14311263 14311321 -106946209 - Lx2B LINE L1 -4 6996 6940 4 694 801 197 0 13 chr12 14311321 14311470 -106946060 + Lx2B LINE L1 6670 6816 -184 4 694 622 264 81 66 chr12 14312213 14312873 -106944657 - L1MA9 LINE L1 -457 5855 5182 4 694 3561 140 30 0 chr12 14312886 14313449 -106944081 - Lx4A LINE L1 -8 7050 6471 4 694 2527 218 25 21 chr12 14313449 14314011 -106943519 + Lx4A LINE L1 5860 6423 -635 4 694 240 203 0 30 chr12 14314053 14314119 -106943411 - L1MA9 LINE L1 -1007 5133 5070 4 694 533 271 30 48 chr12 14314130 14314297 -106943233 + RSINE1 SINE B4 2 165 0 4 694 311 300 0 83 chr12 14315881 14315990 -106941540 + PB1 SINE Alu 21 120 -7 4 694 261 311 175 17 chr12 14317199 14317559 -106939971 - L1MC4 LINE L1 -730 7312 6896 4 694 35 41 0 0 chr12 14317917 14317966 -106939564 + AT_rich Low_complexity Low_complexity 1 49 0 4 694 675 214 211 11 chr12 14318334 14318509 -106939021 - B3 SINE B2 -5 211 2 4 694 193 385 104 0 chr12 14318828 14318963 -106938567 - MIRb SINE MIR -81 187 39 4 694 230 329 0 26 chr12 14319088 14319166 -106938364 + PB1D10 SINE Alu 41 116 -1 4 694 883 313 127 52 chr12 14319318 14319908 -106937622 - MER92B LTR ERV1 0 636 3 4 694 256 236 0 18 chr12 14320301 14320357 -106937173 + B1F SINE Alu 32 86 -63 4 694 488 330 153 52 chr12 14320744 14320919 -106936611 - MTD LTR MaLR -14 405 203 4 694 699 46 0 0 chr12 14320919 14321006 -106936524 + (TTCC)n Simple_repeat Simple_repeat 3 89 0 4 694 488 330 153 52 chr12 14321006 14321195 -106936335 - MTD LTR MaLR -217 202 4 4 694 329 352 24 65 chr12 14321481 14321651 -106935879 + RSINE1 SINE B4 3 165 0 4 694 213 94 0 0 chr12 14321651 14321683 -106935847 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 694 405 244 0 34 chr12 14321734 14321912 -106935618 + (CATA)n Simple_repeat Simple_repeat 1 172 0 4 694 239 348 8 0 chr12 14321914 14322032 -106935498 + (CA)n Simple_repeat Simple_repeat 1 119 0 4 694 341 379 81 24 chr12 14322445 14322691 -106934839 - MIRc SINE MIR -3 265 6 4 694 407 348 32 59 chr12 14322941 14323161 -106934369 - MIR SINE MIR -41 221 8 4 694 293 312 54 41 chr12 14323548 14323695 -106933835 - MamGypLTR2c LTR Gypsy -27 1041 893 4 694 216 329 27 14 chr12 14324240 14324314 -106933216 + ID SINE ID 6 80 -144 4 694 327 250 161 65 chr12 14326453 14326714 -106930816 - B4A SINE B4 -2 290 5 4 694 772 186 12 0 chr12 14327226 14327393 -106930137 + CT-rich Low_complexity Low_complexity 2 170 0 4 694 1450 321 61 22 chr12 14328187 14329035 -106928495 - L1MC1 LINE L1 -5 6328 5448 4 694 717 308 54 45 chr12 14329965 14330350 -106927180 - MLT1C LTR MaLR 0 390 8 4 694 198 0 0 0 chr12 14330556 14330578 -106926952 + (TC)n Simple_repeat Simple_repeat 2 23 0 4 694 336 24 0 0 chr12 14330578 14330618 -106926912 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 694 233 162 15 0 chr12 14330621 14330689 -106926841 + GA-rich Low_complexity Low_complexity 2 70 0 4 694 1041 39 8 0 chr12 14330911 14331041 -106926489 + B1_Mm SINE Alu 17 147 0 4 694 562 279 63 32 chr12 14331624 14331897 -106925633 - MLT2B3 LTR ERVL -20 697 461 4 694 4817 108 60 13 chr12 14331902 14332677 -106924853 - Lx2 LINE L1 -322 6675 5864 4 694 22 0 0 0 chr12 14333166 14333188 -106924342 + AT_rich Low_complexity Low_complexity 1 22 0 4 694 196 324 14 14 chr12 14334247 14334316 -106923214 - L4 LINE RTE -1334 695 627 4 694 1460 178 57 126 chr12 14334873 14334964 -106922566 - ORR1C1 LTR MaLR -2 376 277 4 694 1606 220 59 167 chr12 14334964 14335647 -106921883 + RMER19C LTR ERVK 1 609 -2 4 694 1460 178 57 126 chr12 14335647 14335959 -106921571 - ORR1C1 LTR MaLR -102 276 1 4 694 2655 167 35 4 chr12 14336286 14336774 -106920756 - Lx2 LINE L1 -6 6991 6489 4 694 4970 53 8 14 chr12 14336981 14337626 -106919904 + L1Md_F2 LINE L1 5929 6569 -13 4 694 646 294 86 5 chr12 14337777 14337975 -106919555 - B3 SINE B2 -2 214 1 4 694 210 105 0 0 chr12 14338278 14338316 -106919214 + (T)n Simple_repeat Simple_repeat 1 38 0 4 694 444 170 20 0 chr12 14338630 14338730 -106918800 + Lx9 LINE L1 7542 7643 -1 4 694 367 351 29 59 chr12 14339012 14339251 -106918279 + MIR SINE MIR 18 249 -13 4 694 489 17 0 0 chr12 14340171 14340229 -106917301 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 694 327 49 0 0 chr12 14340285 14340326 -106917204 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 694 474 33 0 0 chr12 14340326 14340385 -106917145 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 694 185 365 18 36 chr12 14340390 14340501 -106917029 - L2 LINE L2 -852 2567 2459 4 694 825 171 7 0 chr12 14340619 14340765 -106916765 + URR1A DNA MER1_type 79 225 -1 4 694 634 255 82 14 chr12 14341215 14341354 -106916176 + B3 SINE B2 50 200 -16 4 694 284 0 28 0 chr12 14341354 14341390 -106916140 + (TAAAA)n Simple_repeat Simple_repeat 5 41 0 4 694 989 98 14 27 chr12 14341525 14341539 -106915991 - B1_Mus2 SINE Alu -2 145 135 4 694 207 0 0 0 chr12 14341539 14341562 -106915968 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 4 694 989 98 14 27 chr12 14341562 14341694 -106915836 - B1_Mus2 SINE Alu -13 134 1 4 694 231 348 76 62 chr12 14342222 14342446 -106915084 + Charlie1a DNA MER1_type 338 564 -891 4 694 431 290 141 50 chr12 14342468 14342831 -106914699 + Charlie1a DNA MER1_type 1047 1442 -13 4 694 188 338 42 0 chr12 14342838 14342909 -106914621 + MIR SINE MIR 162 235 -27 4 694 651 128 0 0 chr12 14344118 14344227 -106913303 + (CA)n Simple_repeat Simple_repeat 2 110 0 4 694 326 211 0 53 chr12 14344229 14344304 -106913226 + HAL1-3A_ME LINE L1 1975 2045 -813 4 694 250 292 85 28 chr12 14344314 14344490 -106913040 + L1MC4 LINE L1 7857 8042 0 4 694 602 79 0 11 chr12 14346349 14346439 -106911091 + (TG)n Simple_repeat Simple_repeat 1 89 0 4 694 22 56 0 0 chr12 14346936 14346972 -106910558 + AT_rich Low_complexity Low_complexity 1 36 0 4 694 183 80 0 0 chr12 14346972 14346997 -106910533 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 694 465 274 40 40 chr12 14347609 14347761 -106909769 - MT2A LTR ERVL -63 470 319 4 694 241 363 36 22 chr12 14347886 14348024 -106909506 - MTEa LTR MaLR -232 147 8 4 694 219 167 0 0 chr12 14348858 14348900 -106908630 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 694 585 115 0 0 chr12 14348969 14349065 -106908465 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 694 756 280 54 15 chr12 14349119 14349322 -106908208 + B3 SINE B2 1 211 -5 4 694 3573 157 4 49 chr12 14350227 14350891 -106906639 - Lx3B LINE L1 -4 6969 6336 4 694 3470 19 134 2 chr12 14350891 14351317 -106906213 - LTRIS_Mm LTR ERV1 0 482 1 4 694 3573 157 4 49 chr12 14351317 14351341 -106906189 - Lx3B LINE L1 -638 6335 6312 4 694 1304 117 97 5 chr12 14351346 14351553 -106905977 + Lx3C LINE L1 6070 6295 -681 4 694 3024 68 2 5 chr12 14351864 14352261 -106905269 - MTA_Mm LTR MaLR 0 396 1 4 694 655 313 118 28 chr12 14352266 14352555 -106904975 - MTE2b LTR MaLR 0 379 65 5 694 423 286 0 39 chr12 14352685 14352787 -106904743 - MTE2b LTR MaLR -281 98 1 5 694 306 259 52 48 chr12 14352908 14353018 -106904512 + ORR1D2 LTR MaLR 265 377 -2 5 694 297 0 0 0 chr12 14353466 14353499 -106904031 + (T)n Simple_repeat Simple_repeat 1 33 0 5 694 321 47 0 0 chr12 14353682 14353725 -106903805 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 694 1455 272 48 5 chr12 14354432 14354827 -106902703 + MTD LTR MaLR 3 414 -5 5 694 405 0 0 0 chr12 14354829 14354874 -106902656 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 694 3372 76 2 44 chr12 14355041 14355521 -106902009 + L1_Mus2 LINE L1 6107 6566 0 5 694 513 314 14 37 chr12 14356022 14356237 -106901293 + ID_B1 SINE B4 1 210 -14 5 694 357 43 0 0 chr12 14356834 14356881 -106900649 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 694 451 289 0 9 chr12 14357616 14357731 -106899799 + ID_B1 SINE B4 102 215 -9 5 694 331 338 44 13 chr12 14357981 14358140 -106899390 - Lx9 LINE L1 -297 7347 7184 5 694 331 311 11 0 chr12 14358907 14358997 -106898533 + MTE2b LTR MaLR 1 91 -288 5 694 760 354 17 34 chr12 14359009 14359363 -106898167 + MT2A LTR ERVL 63 410 -123 5 694 360 0 0 0 chr12 14360610 14360650 -106896880 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 694 561 147 0 0 chr12 14360814 14360909 -106896621 + (TG)n Simple_repeat Simple_repeat 2 96 0 5 694 241 368 35 25 chr12 14361138 14361336 -106896194 - Lx8 LINE L1 -256 7217 7018 5 694 447 270 226 17 chr12 14361541 14361718 -106895812 - B3 SINE B2 0 216 3 5 694 283 281 97 40 chr12 14361719 14362019 -106895511 - L1MDa LINE L1 -3587 2950 2634 5 694 487 331 95 37 chr12 14362496 14362769 -106894761 - B4A SINE B4 0 292 4 5 694 454 310 125 59 chr12 14363060 14363451 -106894079 + MLT1D LTR MaLR 89 505 0 5 694 34 0 0 0 chr12 14363506 14363540 -106893990 + AT_rich Low_complexity Low_complexity 1 34 0 5 694 7922 59 6 6 chr12 14363729 14364749 -106892781 - L1Md_F2 LINE L1 0 6582 5588 5 694 21 0 0 0 chr12 14364785 14364806 -106892724 + AT_rich Low_complexity Low_complexity 1 21 0 5 694 370 354 147 23 chr12 14364918 14365401 -106892129 - L1MDa LINE L1 -5508 1125 583 5 694 1226 173 25 24 chr12 14365503 14365778 -106891752 - Lx3C LINE L1 -2 6974 6654 5 694 339 293 86 46 chr12 14365992 14366167 -106891363 - L1MDa LINE L1 -6427 206 25 5 694 21 36 0 0 chr12 14366529 14366557 -106890973 + AT_rich Low_complexity Low_complexity 1 28 0 5 694 452 230 8 34 chr12 14366854 14366971 -106890559 + Arthur1 DNA Tip100 3500 3613 -334 5 694 255 306 77 52 chr12 14367003 14367158 -106890372 + Arthur1 DNA Tip100 3614 3772 -175 5 694 236 289 100 0 chr12 14367415 14367505 -106890025 - Kanga1 DNA Tc2 -1646 99 1 5 694 391 316 74 10 chr12 14367811 14367984 -106889546 - MLT1D LTR MaLR -5 500 296 5 694 441 0 0 0 chr12 14368364 14368413 -106889117 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 694 214 250 160 19 chr12 14368421 14368527 -106889003 + L2 LINE L2 1409 1529 -1890 5 694 5765 113 18 22 chr12 14370080 14371694 -106885836 + L1VL4 LINE L1 157 1759 -1800 5 694 6617 166 19 32 chr12 14371692 14373760 -106883770 + Lx LINE L1 4581 6649 -5 5 694 24 32 0 0 chr12 14375139 14375170 -106882360 + AT_rich Low_complexity Low_complexity 1 31 0 5 694 27 49 0 0 chr12 14375248 14375289 -106882241 + AT_rich Low_complexity Low_complexity 1 41 0 5 694 363 202 0 0 chr12 14375327 14375406 -106882124 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 5 694 662 84 9 0 chr12 14375610 14375717 -106881813 + (TC)n Simple_repeat Simple_repeat 2 109 0 5 694 545 171 27 0 chr12 14375719 14375865 -106881665 + (TA)n Simple_repeat Simple_repeat 2 151 0 5 694 810 352 43 45 chr12 14375954 14376329 -106881201 + MTEa LTR MaLR 1 374 -5 5 694 1113 84 0 0 chr12 14376339 14376493 -106881037 + (TA)n Simple_repeat Simple_repeat 1 154 0 5 694 23 0 0 0 chr12 14378056 14378079 -106879451 + AT_rich Low_complexity Low_complexity 1 23 0 5 694 241 317 84 7 chr12 14378556 14378699 -106878831 - B2_Mm2 SINE B2 -33 162 9 5 694 436 81 13 13 chr12 14379012 14379087 -106878443 + (TATG)n Simple_repeat Simple_repeat 2 76 0 5 694 370 315 39 16 chr12 14380708 14380837 -106876693 + B1F SINE Alu 16 147 -2 5 694 272 283 98 0 chr12 14380837 14380929 -106876601 + ID4 SINE ID 2 102 -50 5 694 210 150 0 0 chr12 14381401 14381441 -106876089 + (TTA)n Simple_repeat Simple_repeat 2 41 0 5 694 390 42 0 0 chr12 14382320 14382368 -106875162 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 694 265 344 80 68 chr12 14382935 14383097 -106874433 + LTR16A LTR ERVL 251 414 -37 5 694 310 210 98 21 chr12 14383621 14383769 -106873761 - L1MA5 LINE L1 -27 6273 6116 5 694 826 289 134 61 chr12 14383847 14384194 -106873336 - L1MA5 LINE L1 -305 5995 5610 5 694 226 286 71 0 chr12 14384194 14384264 -106873266 - ID4_ SINE ID -4 79 5 5 694 826 290 124 56 chr12 14384264 14384610 -106872920 - L1MA5 LINE L1 -691 5609 5254 5 694 875 107 0 41 chr12 14384754 14384900 -106872630 - L1_Mus2 LINE L1 0 6566 6427 5 694 384 325 47 11 chr12 14385069 14385259 -106872271 - Lx8 LINE L1 -1044 6429 6233 5 694 875 248 259 9 chr12 14385570 14385891 -106871639 + MTD LTR MaLR 18 418 -1 5 694 986 282 84 18 chr12 14386007 14386350 -106871180 + ORR1D2 LTR MaLR 5 370 0 5 694 7090 114 8 1 chr12 14386601 14387716 -106869814 - L1_Mus3 LINE L1 -6 6632 5510 5 694 5750 127 13 45 chr12 14387715 14389193 -106868337 - L1VL4 LINE L1 -1800 1759 344 5 694 225 296 0 27 chr12 14389754 14389827 -106867703 + CT-rich Low_complexity Low_complexity 3 73 0 5 694 281 324 91 9 chr12 14390163 14390384 -106867146 - L1MC3 LINE L1 -136 7649 7411 5 694 422 28 56 0 chr12 14390389 14390461 -106867069 + (TTAA)n Simple_repeat Simple_repeat 2 77 0 5 694 447 326 40 79 chr12 14390549 14390852 -106866678 - L1MC3 LINE L1 -515 7270 6980 5 694 2273 204 22 9 chr12 14390874 14391335 -106866195 - Lx2B LINE L1 0 7000 6534 5 694 235 81 0 0 chr12 14391356 14391393 -106866137 - L1_Mus1 LINE L1 -8 6559 6523 5 694 11590 93 12 3 chr12 14391360 14395145 -106862385 - Lx2 LINE L1 -12 6985 4376 5 694 224 256 12 12 chr12 14395145 14395228 -106862302 + (TTTA)n Simple_repeat Simple_repeat 1 83 0 5 694 37751 45 1 3 chr12 14395253 14401689 -106855841 - L1Md_T LINE L1 0 6585 65 5 694 22604 83 2 1 chr12 14401673 14405680 -106851850 - Lx2 LINE L1 -1486 4397 387 5 694 2405 190 20 8 chr12 14405681 14406186 -106851344 - L1_Mur2 LINE L1 -516 5361 4851 5 694 1501 229 80 13 chr12 14406184 14406560 -106850970 - Lx2B LINE L1 -46 6954 6554 5 694 243 306 0 0 chr12 14406567 14406629 -106850901 + CT-rich Low_complexity Low_complexity 3 64 0 5 694 392 295 44 73 chr12 14406645 14406850 -106850680 - L1MC3 LINE L1 -937 6848 6650 5 694 1549 55 0 39 chr12 14406973 14407161 -106850369 - L1Md_F2 LINE L1 -479 6103 5916 5 694 3728 52 9 0 chr12 14407161 14407624 -106849906 + L1Md_F2 LINE L1 6116 6582 0 5 694 1549 55 0 39 chr12 14407624 14407643 -106849887 - L1Md_F2 LINE L1 -667 5915 5904 5 694 7312 114 8 1 chr12 14408090 14409744 -106847786 - L1_Mus3 LINE L1 -4 6634 4969 5 694 432 253 32 26 chr12 14409742 14409896 -106847634 - L1Md_F LINE L1 -5795 724 570 5 694 188 307 9 73 chr12 14410534 14410643 -106846887 + MIRb SINE MIR 57 158 -110 5 694 926 347 6 22 chr12 14410789 14411107 -106846423 - Lx8 LINE L1 -178 7295 6983 5 694 21 0 0 0 chr12 14411306 14411327 -106846203 + AT_rich Low_complexity Low_complexity 1 21 0 5 694 342 0 0 0 chr12 14411386 14411424 -106846106 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 694 216 0 0 0 chr12 14411424 14411447 -106846083 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 694 213 233 0 0 chr12 14411592 14411635 -106845895 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 5 694 22 70 0 0 chr12 14412002 14412045 -106845485 + AT_rich Low_complexity Low_complexity 1 43 0 5 694 2411 178 79 48 chr12 14413090 14413718 -106843812 + RMER17A LTR ERVK 1 633 -118 5 694 447 291 27 0 chr12 14413725 14413835 -106843695 + MTE2a LTR MaLR 246 358 -21 5 694 3344 75 0 0 chr12 14414700 14415243 -106842287 - L1_Mus2 LINE L1 -610 5956 5414 5 694 4508 82 2 2 chr12 14415243 14415831 -106841699 + L1_Mus2 LINE L1 5978 6565 -1 5 694 358 392 38 0 chr12 14415955 14416113 -106841417 - B4 SINE B4 -4 288 125 5 694 184 122 20 39 chr12 14416733 14416784 -106840746 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 694 1134 71 0 34 chr12 14417442 14417617 -106839913 - L1Md_F2 LINE L1 -3 6579 6411 5 695 440 95 0 26 chr12 14418729 14418805 -106838725 + (TATG)n Simple_repeat Simple_repeat 1 74 0 5 695 596 235 69 38 chr12 14419566 14419725 -106837805 + RSINE1 SINE B4 2 165 0 5 695 537 252 280 101 chr12 14419726 14420079 -106837451 + MTD LTR MaLR 1 417 -2 5 695 405 0 0 0 chr12 14420080 14420125 -106837405 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 695 203 0 0 36 chr12 14420248 14420276 -106837254 + (TAA)n Simple_repeat Simple_repeat 1 27 0 5 695 333 0 0 0 chr12 14420504 14420541 -106836989 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 695 418 277 61 36 chr12 14420577 14420854 -106836676 - L1M2 LINE L1 -1711 4429 4146 5 695 284 137 38 38 chr12 14421280 14421386 -106836144 + (CAGAGA)n Simple_repeat Simple_repeat 1 106 0 5 695 310 380 28 9 chr12 14421476 14421585 -106835945 - MLT1A LTR MaLR -248 126 16 5 695 758 292 49 41 chr12 14422009 14422255 -106835275 + B4A SINE B4 27 274 -18 5 695 574 98 27 0 chr12 14423218 14423330 -106834200 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 5 695 181 30 0 83 chr12 14423956 14423992 -106833538 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 5 695 8087 194 36 59 chr12 14423994 14424074 -106833456 + L1_Mur3 LINE L1 1439 1508 -4372 5 695 2162 148 0 0 chr12 14424074 14424425 -106833105 + Lx LINE L1 6302 6652 -2 5 695 8087 194 36 59 chr12 14424425 14425984 -106831546 + L1_Mur3 LINE L1 1509 2994 -2886 5 695 200 59 29 0 chr12 14425984 14426018 -106831512 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 695 8087 194 36 59 chr12 14426018 14426466 -106831064 + L1_Mur3 LINE L1 2995 3471 -2409 5 695 213 0 0 75 chr12 14426466 14426506 -106831024 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 5 695 8087 194 36 59 chr12 14426506 14426623 -106830907 + L1_Mur3 LINE L1 3472 3593 -2287 5 695 1077 146 6 6 chr12 14427059 14427238 -106830292 - B2_Mm2 SINE B2 -16 179 1 5 695 1186 169 19 0 chr12 14427731 14427944 -106829586 - Lx2 LINE L1 -6 6991 6775 5 695 1840 78 12 0 chr12 14427952 14428195 -106829335 + Lx2 LINE L1 6348 6593 -404 6 695 609 222 199 6 chr12 14428483 14428664 -106828866 - MTD LTR MaLR -6 413 198 6 695 21 0 0 0 chr12 14428666 14428687 -106828843 + AT_rich Low_complexity Low_complexity 1 21 0 6 695 236 262 17 108 chr12 14428691 14428811 -106828719 - Lx7 LINE L1 -19 7677 7569 6 695 301 336 0 38 chr12 14428863 14428996 -106828534 - Lx7 LINE L1 -396 7300 7173 6 695 404 262 15 14 chr12 14429287 14429411 -106828119 - MTD LTR MaLR -288 133 6 6 695 217 231 98 0 chr12 14432864 14432940 -106824590 + MIR SINE MIR 40 120 -156 6 695 1041 258 34 19 chr12 14433262 14433531 -106823999 - Lx6 LINE L1 -26 7434 7162 6 695 348 328 0 25 chr12 14434136 14434255 -106823275 - PB1D10 SINE Alu 0 117 2 6 695 24 0 0 0 chr12 14434305 14434329 -106823201 + AT_rich Low_complexity Low_complexity 1 24 0 6 695 195 309 161 0 chr12 14434343 14434424 -106823106 - MIRc SINE MIR -99 169 76 6 695 180 219 0 0 chr12 14435787 14435828 -106821702 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 695 500 0 17 0 chr12 14436289 14436349 -106821181 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 695 847 244 169 67 chr12 14436361 14436782 -106820748 + RMER13A LTR ERVK 2 465 -395 6 695 366 304 15 108 chr12 14436897 14437045 -106820485 - B3 SINE B2 -35 181 37 6 695 1575 235 82 14 chr12 14437399 14437766 -106819764 - Lx5 LINE L1 -3 7047 6656 6 695 4346 172 20 44 chr12 14437766 14439068 -106818462 + L1Md_T LINE L1 5306 6565 -17 6 695 2603 216 17 4 chr12 14439083 14439597 -106817933 + Lx5 LINE L1 6103 6647 -403 6 695 288 0 0 0 chr12 14440146 14440178 -106817352 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 6 695 453 360 24 18 chr12 14440179 14440343 -106817187 - RSINE1 SINE B4 0 165 1 6 695 327 260 48 9 chr12 14441326 14441431 -106816099 - MER58D DNA MER1_type 0 386 278 6 695 407 297 63 26 chr12 14442610 14442800 -106814730 - Lx8 LINE L1 0 7473 7277 6 695 248 193 18 0 chr12 14443258 14443315 -106814215 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 695 209 368 116 19 chr12 14443712 14443867 -106813663 - MER5B DNA MER1_type -7 171 2 6 695 24 67 0 0 chr12 14446692 14446737 -106810793 + AT_rich Low_complexity Low_complexity 1 45 0 6 695 3065 26 78 10 chr12 14447154 14447539 -106809991 + IAPLTR2a LTR ERVK 1 411 0 6 695 1022 158 46 19 chr12 14447540 14447800 -106809730 + IAPEz-int LTR ERVK 9 250 -7331 6 695 242 250 0 0 chr12 14447800 14447848 -106809682 + RLTR27 LTR ERVK 221 268 -41 6 695 641 114 47 9 chr12 14447848 14447954 -106809576 + IAPEz-int LTR ERVK 141 250 -7331 6 695 242 250 0 0 chr12 14447954 14448002 -106809528 + RLTR27 LTR ERVK 221 268 -41 6 695 10308 86 41 70 chr12 14448002 14449665 -106807865 + IAPEz-int LTR ERVK 94 1700 -4781 6 695 6164 73 12 11 chr12 14449660 14450486 -106807044 + IAPEz-int LTR ERVK 5653 6479 -2 6 695 3034 32 78 10 chr12 14450488 14450871 -106806659 + IAPLTR2a LTR ERVK 1 409 -2 6 695 635 201 7 0 chr12 14451646 14451790 -106805740 + (TA)n Simple_repeat Simple_repeat 2 146 0 6 695 326 301 26 9 chr12 14452594 14452708 -106804822 + CT-rich Low_complexity Low_complexity 1 116 0 6 695 253 285 204 87 chr12 14453314 14453510 -106804020 - MLT1C LTR MaLR -7 460 242 6 695 26 50 0 0 chr12 14453979 14454019 -106803511 + AT_rich Low_complexity Low_complexity 1 40 0 6 695 461 323 31 22 chr12 14454424 14454649 -106802881 + L1MB7 LINE L1 5431 5657 -527 6 695 537 332 122 20 chr12 14454709 14454964 -106802566 + B4A SINE B4 2 282 -10 6 695 315 296 52 89 chr12 14455088 14455437 -106802093 + L1MB7 LINE L1 5818 6153 -31 6 695 994 186 0 25 chr12 14455649 14455847 -106801683 - Lx2B LINE L1 -5 6995 6803 6 695 3826 140 6 3 chr12 14455882 14456520 -106801010 - L1VL2 LINE L1 -281 3334 2695 6 695 37974 30 1 0 chr12 14456518 14462762 -106794768 - L1Md_T LINE L1 0 6585 241 6 695 8667 180 35 18 chr12 14462736 14464982 -106792548 - L1VL2 LINE L1 -888 2727 443 6 695 227 240 0 0 chr12 14465137 14465187 -106792343 - L1VL2 LINE L1 -5843 492 443 6 695 746 161 7 0 chr12 14465219 14465362 -106792168 + Lx LINE L1 6511 6654 0 6 695 310 232 34 62 chr12 14467133 14467282 -106790248 + (CAGA)n Simple_repeat Simple_repeat 4 151 0 6 695 716 86 9 0 chr12 14467282 14467387 -106790143 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 695 310 232 34 62 chr12 14467387 14467416 -106790114 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 6 695 300 373 24 0 chr12 14469121 14469247 -106788283 + B1F SINE Alu 1 129 -20 6 695 283 348 85 0 chr12 14469365 14469483 -106788047 - B1F SINE Alu -17 132 5 6 695 252 324 99 20 chr12 14470115 14470266 -106787264 - RMER15 LTR ERVL -1 574 412 6 695 1041 85 0 0 chr12 14471931 14472072 -106785458 + RMER17D2 LTR ERVK 1 141 -610 6 695 1505 159 37 64 chr12 14472068 14472445 -106785085 + RMER17D2 LTR ERVK 441 807 -2 6 695 486 0 0 0 chr12 14473072 14473126 -106784404 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 695 515 29 14 0 chr12 14473126 14473194 -106784336 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 695 300 280 71 64 chr12 14473531 14473672 -106783858 - MER5A DNA MER1_type -46 143 2 6 695 6487 56 50 6 chr12 14474125 14474983 -106782547 + L1Md_F2 LINE L1 5686 6581 -1 6 695 1307 267 92 3 chr12 14475825 14476163 -106781367 + ORR1D1 LTR MaLR 2 369 -5 6 695 219 103 0 0 chr12 14479192 14479231 -106778299 + (T)n Simple_repeat Simple_repeat 1 39 0 6 695 41 36 0 0 chr12 14479444 14479499 -106778031 + AT_rich Low_complexity Low_complexity 1 55 0 6 695 251 316 189 0 chr12 14479499 14479594 -106777936 - B1F2 SINE Alu -29 120 8 6 695 553 260 62 42 chr12 14479627 14479918 -106777612 + L1_Mm LINE L1 5359 5683 -617 6 695 204 393 26 0 chr12 14479944 14480061 -106777469 - L2c LINE L2 -212 3175 3056 6 695 553 69 11 33 chr12 14480764 14480854 -106776676 - L1_Mur1 LINE L1 -1087 4799 4712 6 695 5100 176 41 12 chr12 14480851 14480983 -106776547 + Lx LINE L1 4853 4985 -898 6 695 1025 116 0 13 chr12 14480983 14481122 -106776408 + B1_Mus1 SINE Alu 1 139 -9 6 695 308 43 22 0 chr12 14481122 14481168 -106776362 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 6 695 5100 176 41 12 chr12 14481177 14481460 -106776070 + Lx LINE L1 4986 5266 -617 6 695 4282 83 20 3 chr12 14481460 14482054 -106775476 + L1_Mus3 LINE L1 6035 6638 0 6 695 6389 159 16 10 chr12 14482054 14483404 -106774126 + Lx LINE L1 5267 6643 -11 6 695 375 23 0 0 chr12 14483404 14483448 -106774082 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 695 302 274 14 0 chr12 14485990 14486063 -106771467 + RSINE1 SINE B4 8 81 -84 6 695 495 0 0 0 chr12 14486433 14486488 -106771042 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 695 7556 35 15 0 chr12 14487018 14487939 -106769591 - L1Md_F3 LINE L1 -2 6582 5648 6 695 336 194 15 0 chr12 14487926 14487993 -106769537 + L1_Mur1 LINE L1 5082 5149 -737 6 695 408 20 0 0 chr12 14488212 14488261 -106769269 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 695 28 61 0 0 chr12 14490130 14490179 -106767351 + AT_rich Low_complexity Low_complexity 1 49 0 6 695 25 0 0 0 chr12 14490278 14490303 -106767227 + AT_rich Low_complexity Low_complexity 1 25 0 6 695 557 94 12 0 chr12 14491464 14491549 -106765981 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 695 294 357 40 40 chr12 14491552 14491727 -106765803 + MER63D DNA AcHobo 205 379 -682 6 695 381 170 9 18 chr12 14492097 14492211 -106765319 + (TA)n Simple_repeat Simple_repeat 2 114 0 6 695 266 257 114 0 chr12 14492678 14492748 -106764782 + RSINE1 SINE B4 53 130 -35 6 695 21 0 0 31 chr12 14492780 14492792 -106764738 + AT_rich Low_complexity Low_complexity 1 12 0 6 695 423 0 0 0 chr12 14492792 14492839 -106764691 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 695 21 0 0 31 chr12 14492839 14492858 -106764672 + AT_rich Low_complexity Low_complexity 1 19 0 6 695 266 330 43 60 chr12 14492904 14493088 -106764442 - L2c LINE L2 0 3387 3207 6 695 395 141 0 13 chr12 14493514 14493593 -106763937 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 695 396 301 175 57 chr12 14493596 14493873 -106763657 - B4A SINE B4 -16 276 3 6 695 191 87 19 132 chr12 14494008 14494061 -106763469 + L3 LINE CR1 25 71 -4418 6 695 198 0 0 0 chr12 14494442 14494464 -106763066 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 6 695 238 361 56 0 chr12 14494727 14494799 -106762731 - B1F1 SINE Alu -60 89 14 6 695 808 332 43 22 chr12 14495377 14495819 -106761711 - Lx9 LINE L1 -183 7461 6888 6 695 28763 66 1 0 chr12 14495845 14500000 -106757530 - L1Md_F2 LINE L1 -312 6270 2112 6 695 2768 98 0 0 chr12 14500000 14500408 -106757122 - L1_Mm LINE L1 -3772 2111 1704 1 695 1217 281 117 29 chr12 14500411 14501278 -106756252 - L1MA5A LINE L1 -355 5942 4919 2 695 23 0 0 0 chr12 14501983 14502006 -106755524 + AT_rich Low_complexity Low_complexity 1 23 0 3 695 4070 97 4 73 chr12 14502065 14503369 -106754161 - L1Md_F LINE L1 -4164 1719 511 4 695 26865 116 4 9 chr12 14503369 14505082 -106752448 + L1_Mus1 LINE L1 1799 3488 -2395 5 695 305 24 24 0 chr12 14505082 14505124 -106752406 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 695 26865 111 3 6 chr12 14505124 14508195 -106749335 + L1_Mus1 LINE L1 3489 6566 -1 5 695 405 0 0 0 chr12 14508206 14508251 -106749279 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 7 695 249 57 0 0 chr12 14508276 14508311 -106749219 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 695 261 83 0 0 chr12 14508923 14508959 -106748571 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 9 695 1027 112 0 13 chr12 14509748 14509902 -106747628 - L1_Mus1 LINE L1 0 6567 6416 1 695 2214 214 52 54 chr12 14510059 14510633 -106746897 - RMER15 LTR ERVL -2 573 1 1 695 10576 161 10 18 chr12 14510933 14512434 -106745096 + L1VL4 LINE L1 205 1700 -1859 1 695 297 51 0 0 chr12 14512434 14512473 -106745057 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 695 10576 122 10 15 chr12 14512473 14513392 -106744138 + L1VL4 LINE L1 1701 2607 -952 1 695 828 85 0 0 chr12 14513392 14513498 -106744032 + U6 snRNA snRNA 1 106 -1 1 695 6900 122 161 35 chr12 14513499 14515005 -106742525 + L1_Mm LINE L1 1569 3265 -2618 1 695 12900 172 193 11 chr12 14515003 14520168 -106737362 + L1_Mus2 LINE L1 387 6566 0 1 695 603 193 20 7 chr12 14520159 14520310 -106737220 + L1_Mur1 LINE L1 3251 3403 -2483 1 695 267 308 25 30 chr12 14520804 14521005 -106736525 + L1M4 LINE L1 3842 4041 -2105 1 695 1258 304 50 3 chr12 14521699 14522082 -106735448 + MTD LTR MaLR 5 405 -14 1 695 462 149 0 0 chr12 14522138 14522225 -106735305 + (TATG)n Simple_repeat Simple_repeat 4 90 0 2 695 566 210 80 27 chr12 14522948 14523090 -106734440 - MTD LTR MaLR -23 396 230 2 695 323 251 65 100 chr12 14523141 14523275 -106734255 - MTD LTR MaLR -145 274 119 2 695 285 311 161 37 chr12 14523439 14523656 -106733874 - MIRb SINE MIR -10 258 11 2 695 252 0 0 0 chr12 14524080 14524108 -106733422 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 695 288 0 0 0 chr12 14524108 14524139 -106733391 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 695 23 33 0 0 chr12 14524332 14524362 -106733168 + AT_rich Low_complexity Low_complexity 1 30 0 2 695 504 0 0 0 chr12 14525094 14525150 -106732380 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 695 219 36 0 0 chr12 14526212 14526240 -106731290 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 695 2593 260 33 10 chr12 14526492 14527098 -106730432 - Lx5 LINE L1 -6 7044 6425 2 695 3066 86 2 2 chr12 14527098 14527504 -106730026 + MTB_Mm LTR MaLR 1 406 -1 2 695 4811 158 112 20 chr12 14527506 14528509 -106729021 + MTB_Mm-int LTR MaLR 6 1100 -158 2 695 419 86 14 14 chr12 14528521 14528592 -106728938 - Lx2A LINE L1 -7 7001 6931 3 695 8664 125 32 15 chr12 14528593 14528637 -106728893 - Lx2A LINE L1 -32 6976 6934 3 695 1920 152 85 26 chr12 14528637 14529015 -106728515 + RLTR9D LTR ERVK 1 400 -3 3 695 23841 147 27 36 chr12 14529015 14532166 -106725364 - Lx2A LINE L1 -75 6933 3771 3 695 459 194 116 65 chr12 14532166 14532196 -106725334 - ID_B1 SINE B4 0 224 82 3 695 716 123 0 0 chr12 14532196 14532302 -106725228 - B1_Mus1 SINE Alu -42 106 1 3 695 23841 147 27 36 chr12 14532304 14533432 -106724098 - Lx2A LINE L1 -75 3770 2637 3 695 354 23 0 0 chr12 14533432 14533475 -106724055 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 695 23841 178 46 40 chr12 14533475 14535861 -106721669 - Lx2A LINE L1 -3247 2636 379 3 695 240 184 0 0 chr12 14536793 14536842 -106720688 + CT-rich Low_complexity Low_complexity 4 52 0 3 695 249 98 0 0 chr12 14536879 14536920 -106720610 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 3 695 24 32 0 0 chr12 14537195 14537226 -106720304 + AT_rich Low_complexity Low_complexity 1 31 0 3 695 396 324 121 49 chr12 14537687 14538239 -106719291 - L1MEc LINE L1 -3914 2486 1895 3 695 285 195 31 39 chr12 14538245 14538332 -106719198 - B1F SINE Alu -1 119 32 4 695 317 383 16 8 chr12 14539211 14539332 -106718198 - B1F SINE Alu -15 134 13 4 695 471 271 38 109 chr12 14539489 14539700 -106717830 - B3A SINE B2 0 198 3 4 695 189 286 35 18 chr12 14540273 14540330 -106717200 + L3 LINE CR1 3235 3292 -1197 4 695 817 247 5 10 chr12 14541004 14541200 -106716330 + Lx5 LINE L1 6856 7050 0 4 695 491 292 74 28 chr12 14543058 14543382 -106714148 - L1ME1 LINE L1 -240 5939 5601 4 695 559 335 11 6 chr12 14543495 14543678 -106713852 - B3A SINE B2 -14 184 1 4 695 1066 29 7 0 chr12 14544115 14544253 -106713277 - L1Md_T LINE L1 -1 6581 6443 4 695 21 0 0 0 chr12 14544537 14544558 -106712972 + AT_rich Low_complexity Low_complexity 1 21 0 4 695 503 367 13 44 chr12 14544703 14544931 -106712599 - B4A SINE B4 -3 289 69 4 695 180 0 0 0 chr12 14545477 14545497 -106712033 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 86 39843 25 3 6 chr12 14546178 14552584 -106704946 - L1Md_T LINE L1 0 6582 201 5 696 602 60 0 12 chr12 14552862 14552946 -106704584 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 5 696 318 226 147 39 chr12 14553152 14553281 -106704249 + B1F SINE Alu 5 147 -2 5 696 282 355 84 0 chr12 14554380 14554487 -106703043 + B4A SINE B4 166 281 -11 5 696 351 0 0 0 chr12 14554522 14554561 -106702969 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 696 2409 82 51 26 chr12 14554901 14555251 -106702279 - RLTR10D LTR ERVK 0 359 1 5 696 26 0 0 0 chr12 14555458 14555484 -106702046 + AT_rich Low_complexity Low_complexity 1 26 0 5 696 239 91 23 0 chr12 14555645 14555689 -106701841 - Lx9 LINE L1 -1 7643 7599 5 696 601 186 93 33 chr12 14555686 14555836 -106701694 - Lx9 LINE L1 -167 7477 7319 5 696 220 367 75 98 chr12 14556717 14556850 -106700680 + B3A SINE B2 64 193 -5 5 696 202 219 0 0 chr12 14557217 14557258 -106700272 + CT-rich Low_complexity Low_complexity 3 43 0 6 696 386 339 58 11 chr12 14557331 14557522 -106700008 - MLT1D LTR MaLR -8 497 298 6 696 244 226 0 31 chr12 14558039 14558103 -106699427 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 696 280 226 7 42 chr12 14558117 14558260 -106699270 + (CA)n Simple_repeat Simple_repeat 2 139 0 6 696 655 327 43 72 chr12 14558313 14558728 -106698802 + MLT1D LTR MaLR 103 505 0 6 696 515 276 24 28 chr12 14559073 14559326 -106698204 - L1MC4 LINE L1 -383 7659 7408 6 696 567 294 299 23 chr12 14559619 14560054 -106697476 - RMER15 LTR ERVL -16 559 5 6 696 294 388 55 5 chr12 14560143 14560345 -106697185 - MIR SINE MIR -5 257 46 6 696 22 0 0 0 chr12 14560460 14560482 -106697048 + AT_rich Low_complexity Low_complexity 1 22 0 6 696 21 36 0 0 chr12 14561392 14561420 -106696110 + AT_rich Low_complexity Low_complexity 1 28 0 6 696 381 176 0 0 chr12 14561702 14561776 -106695754 + A-rich Low_complexity Low_complexity 1 74 0 6 696 19335 151 46 15 chr12 14561987 14564763 -106692767 - Lx LINE L1 0 6654 3865 7 696 324 0 0 0 chr12 14564763 14564799 -106692731 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 696 19335 173 71 7 chr12 14564799 14565165 -106692365 - Lx LINE L1 -2019 3864 3492 7 696 279 0 0 0 chr12 14565165 14565196 -106692334 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 7 696 19335 173 71 7 chr12 14565196 14565735 -106691795 - Lx LINE L1 -2392 3491 2942 7 696 234 62 0 0 chr12 14565735 14565767 -106691763 + (TTTTG)n Simple_repeat Simple_repeat 5 36 0 7 696 19335 173 71 7 chr12 14565767 14567211 -106690319 - Lx LINE L1 -2942 2941 1281 7 696 4115 58 39 6 chr12 14567212 14567754 -106689776 - LTRIS2 LTR ERV1 0 564 5 7 696 2535 184 65 58 chr12 14567757 14567948 -106689582 - L1VL4 LINE L1 -5379 923 728 7 696 1087 92 7 0 chr12 14567948 14568090 -106689440 + B1_Mus1 SINE Alu 5 147 -1 7 696 2535 191 62 56 chr12 14568090 14568619 -106688911 - L1VL4 LINE L1 -5575 727 226 7 696 22 0 0 0 chr12 14569333 14569355 -106688175 + AT_rich Low_complexity Low_complexity 1 22 0 7 696 22 0 0 0 chr12 14570596 14570618 -106686912 + AT_rich Low_complexity Low_complexity 1 22 0 7 696 335 330 34 51 chr12 14570696 14570814 -106686716 + PB1D10 SINE Alu 9 124 -25 7 696 539 171 0 0 chr12 14573829 14573911 -106683619 + B3 SINE B2 2 83 -133 8 696 717 23 0 0 chr12 14574135 14574222 -106683308 + (GA)n Simple_repeat Simple_repeat 2 88 0 8 696 693 70 0 0 chr12 14574326 14574426 -106683104 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 8 696 1041 300 102 27 chr12 14574759 14575836 -106681694 + L1MA6 LINE L1 5120 6276 -24 8 696 468 0 0 0 chr12 14575839 14575891 -106681639 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 696 477 0 0 0 chr12 14575891 14575943 -106681587 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 696 21 36 0 0 chr12 14576835 14576863 -106680667 + AT_rich Low_complexity Low_complexity 1 28 0 8 696 21 0 0 0 chr12 14576964 14576985 -106680545 + AT_rich Low_complexity Low_complexity 1 21 0 8 696 360 0 0 0 chr12 14578186 14578226 -106679304 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 696 1078 144 44 15 chr12 14578276 14578480 -106679050 - Lx2 LINE L1 -13 6984 6775 8 696 1054 258 53 31 chr12 14578521 14578563 -106678967 - RLTR20B3 LTR ERVK -180 397 362 9 696 2962 67 54 3 chr12 14578563 14578954 -106678576 + RLTR10A LTR ERVK 1 411 0 9 696 1054 258 53 31 chr12 14578954 14579231 -106678299 - RLTR20B3 LTR ERVK -216 361 71 9 696 499 315 130 19 chr12 14579541 14579965 -106677565 + L1M5 LINE L1 5366 5822 -342 9 696 259 250 46 40 chr12 14580118 14580293 -106677237 + (TCTA)n Simple_repeat Simple_repeat 4 179 0 9 696 24 53 0 0 chr12 14580528 14580566 -106676964 + AT_rich Low_complexity Low_complexity 1 38 0 9 696 347 340 108 15 chr12 14581044 14581304 -106676226 - MLT1D LTR MaLR -215 290 7 9 696 336 125 0 0 chr12 14581922 14581986 -106675544 + (A)n Simple_repeat Simple_repeat 1 64 0 9 696 8795 173 92 44 chr12 14582167 14584910 -106672620 - Lx5 LINE L1 0 7050 4033 9 696 185 0 40 0 chr12 14584910 14584935 -106672595 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 696 740 71 10 0 chr12 14584935 14585034 -106672496 - B1_Mm SINE Alu -1 146 47 9 696 8795 161 122 67 chr12 14585034 14585082 -106672448 - Lx5 LINE L1 -1845 4032 3991 9 696 2922 87 19 5 chr12 14585082 14585497 -106672033 + BGLII LTR ERVK 1 421 0 1 696 8795 161 122 67 chr12 14585497 14585948 -106671582 - Lx5 LINE L1 -1887 3990 3536 9 696 504 0 0 0 chr12 14585948 14586004 -106671526 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 696 8795 161 122 67 chr12 14586004 14586058 -106671472 - Lx5 LINE L1 -2342 3535 3478 9 696 5454 196 30 14 chr12 14586090 14587269 -106670261 - Lx3C LINE L1 -68 6908 5712 1 696 740 176 16 0 chr12 14587649 14587774 -106669756 - ETnERV2-int LTR ERVK -210 7196 7070 1 696 1259 201 83 0 chr12 14587777 14587792 -106669738 - L1_Mur2 LINE L1 -164 5722 5704 1 696 322 0 83 0 chr12 14587792 14587840 -106669690 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 1 696 1259 201 83 0 chr12 14587840 14588112 -106669418 - L1_Mur2 LINE L1 -183 5703 5412 1 696 1200 172 36 60 chr12 14588117 14588269 -106669261 - L1_Mur2 LINE L1 -2423 3454 3304 1 696 5469 82 0 22 chr12 14588269 14589031 -106668499 - L1Md_F2 LINE L1 0 6582 5838 1 696 1200 172 36 60 chr12 14589031 14589212 -106668318 - L1_Mur2 LINE L1 -2574 3303 3129 1 696 2400 66 0 3 chr12 14589241 14589547 -106667983 + L1_Mus1 LINE L1 6263 6567 0 1 696 2222 179 163 11 chr12 14589548 14590350 -106667180 - L1_Mur2 LINE L1 -4065 1812 889 1 696 360 0 0 0 chr12 14591551 14591591 -106665939 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 696 361 349 44 83 chr12 14591602 14591783 -106665747 + B4A SINE B4 3 176 -116 1 696 444 114 0 0 chr12 14591831 14591893 -106665637 + (TTTTC)n Simple_repeat Simple_repeat 5 66 0 1 696 1123 82 7 0 chr12 14591893 14592039 -106665491 - B1_Mm SINE Alu 0 147 1 1 696 444 114 0 0 chr12 14592039 14592046 -106665484 + (TTTTC)n Simple_repeat Simple_repeat 3 9 0 1 696 402 21 0 0 chr12 14592122 14592169 -106665361 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 696 387 0 0 0 chr12 14592169 14592211 -106665319 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 696 227 297 157 25 chr12 14592337 14592534 -106664996 - MIRc SINE MIR -17 251 29 1 696 261 57 0 0 chr12 14592683 14592718 -106664812 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 696 189 74 0 0 chr12 14592758 14592785 -106664745 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 696 792 161 0 0 chr12 14592796 14592945 -106664585 - Lx2 LINE L1 -1 6996 6848 1 696 1164 62 0 20 chr12 14593436 14593585 -106663945 + B1_Mus1 SINE Alu 2 147 -1 1 696 313 58 19 19 chr12 14593598 14593651 -106663879 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 1 696 21 0 0 0 chr12 14594296 14594317 -106663213 + AT_rich Low_complexity Low_complexity 1 21 0 1 696 226 233 0 0 chr12 14594621 14594664 -106662866 + RMER30 DNA MER1_type 9 51 -151 1 696 582 15 0 0 chr12 14594856 14594923 -106662607 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 1 696 905 166 4 12 chr12 14594952 14595210 -106662320 + CT-rich Low_complexity Low_complexity 1 255 0 1 696 293 368 43 57 chr12 14595243 14595384 -106662146 - RSINE1 SINE B4 0 165 27 1 696 1161 197 5 5 chr12 14595978 14596202 -106661328 + URR1A DNA MER1_type 1 224 -2 1 696 23 0 0 0 chr12 14596623 14596646 -106660884 + AT_rich Low_complexity Low_complexity 1 23 0 1 696 317 289 62 69 chr12 14597174 14597334 -106660196 - RSINE1 SINE B4 -4 161 3 1 696 495 0 0 0 chr12 14597447 14597502 -106660028 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 696 424 102 11 22 chr12 14598806 14598896 -106658634 + (TTTTG)n Simple_repeat Simple_repeat 2 90 0 1 696 22 0 0 0 chr12 14598901 14598923 -106658607 + AT_rich Low_complexity Low_complexity 1 22 0 1 696 810 183 99 0 chr12 14598923 14599114 -106658416 - Lx3A LINE L1 -4 6977 6768 1 696 1081 121 0 0 chr12 14599107 14599272 -106658258 + Lx3A LINE L1 5661 5825 -1156 1 696 295 301 0 0 chr12 14599344 14599457 -106658073 + (CA)n Simple_repeat Simple_repeat 2 114 0 1 696 729 34 0 0 chr12 14599460 14599548 -106657982 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 696 318 247 0 0 chr12 14599556 14599702 -106657828 + (CA)n Simple_repeat Simple_repeat 2 147 0 1 696 471 68 11 80 chr12 14599887 14600062 -106657468 + T-rich Low_complexity Low_complexity 1 163 0 1 696 1113 102 0 0 chr12 14600071 14600218 -106657312 - B1_Mus2 SINE Alu 0 147 1 1 696 4379 109 39 1 chr12 14600228 14600900 -106656630 - L1_Mus3 LINE L1 -6 6632 5936 1 696 2364 72 15 12 chr12 14601005 14601331 -106656199 - IAPLTR2b LTR ERVK 0 327 1 1 696 50874 26 13 6 chr12 14601333 14607560 -106649970 - IAPEz-int LTR ERVK -2 6479 211 1 696 936 58 0 0 chr12 14607560 14607681 -106649849 - IAPEz-int LTR ERVK -6196 285 165 1 696 237 308 0 0 chr12 14607681 14607733 -106649797 - RLTR27 LTR ERVK -37 272 221 1 696 1018 106 25 82 chr12 14607733 14607929 -106649601 - IAPEz-int LTR ERVK -6288 193 9 1 696 2380 62 18 15 chr12 14607930 14608256 -106649274 - IAPLTR2b LTR ERVK 0 327 1 1 696 373 375 0 56 chr12 14609247 14609391 -106648139 - ID_B1 SINE B4 -8 216 81 1 696 33687 88 12 4 chr12 14610117 14616258 -106641272 - L1Md_F2 LINE L1 -12 6570 380 1 696 234 91 0 0 chr12 14616406 14616439 -106641091 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 696 28 71 0 0 chr12 14616633 14616689 -106640841 + AT_rich Low_complexity Low_complexity 1 56 0 1 696 28 0 0 0 chr12 14616866 14616894 -106640636 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 777 301 10 72 chr12 14616894 14617102 -106640428 - B3A SINE B2 -2 196 2 1 696 396 0 0 0 chr12 14617284 14617328 -106640202 + (TTTTA)n Simple_repeat Simple_repeat 5 48 0 1 696 255 31 0 0 chr12 14617416 14617448 -106640082 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 696 3573 70 0 2 chr12 14618361 14618847 -106638683 - L1_Mus1 LINE L1 0 6567 6104 1 696 254 146 0 0 chr12 14618847 14618888 -106638642 + L1_Mus1 LINE L1 6032 6072 -495 1 696 2808 153 46 4 chr12 14620240 14620738 -106636792 - L1_Mur2 LINE L1 -405 5472 4954 1 696 580 261 71 9 chr12 14620736 14620942 -106636588 + Lx3C LINE L1 6760 7054 -4 1 696 191 172 32 65 chr12 14621116 14621178 -106636352 - L3 LINE CR1 -3556 933 874 1 696 396 0 0 0 chr12 14623967 14624011 -106633519 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 696 234 0 0 0 chr12 14624670 14624696 -106632834 + (T)n Simple_repeat Simple_repeat 1 26 0 1 696 227 254 141 0 chr12 14624963 14625034 -106632496 + MIR SINE MIR 112 192 -70 1 696 692 302 93 48 chr12 14625367 14625635 -106631895 + B4A SINE B4 1 280 -12 1 696 277 290 82 112 chr12 14626074 14626342 -106631188 + L4 LINE RTE 1768 2027 -2 1 696 21 36 0 0 chr12 14627335 14627363 -106630167 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 28 0 0 0 chr12 14628179 14628207 -106629323 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 327 211 49 63 chr12 14629338 14629480 -106628050 - Lx9 LINE L1 0 7644 7505 1 696 573 287 28 41 chr12 14629845 14630063 -106627467 + B3 SINE B2 2 216 0 1 696 794 285 81 55 chr12 14630602 14630947 -106626583 + MTE2b LTR MaLR 1 354 -25 1 696 612 133 38 9 chr12 14630924 14631030 -106626500 - B1_Mus1 SINE Alu -39 109 1 1 696 267 200 67 0 chr12 14634092 14634152 -106623378 + Tigger12c DNA MER2_type 70 133 -601 1 696 192 152 0 0 chr12 14634321 14634354 -106623176 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 696 584 132 6 4 chr12 14634784 14634893 -106622637 + MTD LTR MaLR 304 413 -8 1 696 297 0 0 0 chr12 14635407 14635440 -106622090 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1 696 1149 69 0 0 chr12 14635440 14635584 -106621946 - B1_Mm SINE Alu -3 144 1 1 696 207 0 0 0 chr12 14635838 14635861 -106621669 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 696 1229 198 9 0 chr12 14636751 14636973 -106620557 + URR1B DNA MER1_type 1 224 -1 1 696 7176 120 35 14 chr12 14637941 14639108 -106618422 - Lx2 LINE L1 0 6997 5806 1 696 1182 55 7 0 chr12 14639186 14639332 -106618198 + B1_Mm SINE Alu 1 147 0 1 696 206 0 69 0 chr12 14639340 14639369 -106618161 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 1 696 6797 84 16 4 chr12 14639554 14640489 -106617041 + L1_Mus3 LINE L1 5692 6637 -1 1 696 27 92 0 0 chr12 14640655 14640731 -106616799 + AT_rich Low_complexity Low_complexity 1 76 0 1 696 250 248 82 2 chr12 14641366 14641462 -106616068 - MTEb LTR MaLR 0 379 278 1 696 4676 88 1 11 chr12 14641743 14642398 -106615132 - Lx3_Mus LINE L1 -303 6706 6058 1 696 2026 118 7 3 chr12 14642398 14642704 -106614826 + Lx3_Mus LINE L1 6703 7009 0 1 696 489 298 66 29 chr12 14642846 14643119 -106614411 - L1_Mur3 LINE L1 -3659 2221 1939 1 696 3229 116 67 17 chr12 14643144 14643663 -106613867 - L1_Mus3 LINE L1 -5 6633 6089 1 696 3536 84 4 2 chr12 14643663 14644236 -106613294 + L1_Mus3 LINE L1 5498 6419 -578 1 696 911 278 108 15 chr12 14644315 14644414 -106613116 + Lx5 LINE L1 6695 6801 -257 1 696 3305 117 37 30 chr12 14644414 14644985 -106612545 - Lx LINE L1 -7 6647 6073 1 696 997 236 58 0 chr12 14644985 14645218 -106612312 + Lx5 LINE L1 6802 7057 -1 1 696 209 33 33 0 chr12 14646132 14646162 -106611368 + (TTATA)n Simple_repeat Simple_repeat 4 34 0 1 696 276 321 103 9 chr12 14646254 14646361 -106611169 - ID_B1 SINE B4 -104 120 4 1 696 527 288 19 50 chr12 14646951 14647112 -106610418 + RSINE1 SINE B4 9 164 -1 1 696 236 100 25 0 chr12 14647174 14647214 -106610316 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 696 417 97 0 0 chr12 14648033 14648105 -106609425 + (TCTCTG)n Simple_repeat Simple_repeat 6 77 0 1 696 398 349 29 11 chr12 14648105 14648279 -106609251 - B3A SINE B2 -19 179 3 1 696 520 237 108 6 chr12 14649655 14649812 -106607718 - Lx2B LINE L1 -6 6994 6822 1 696 2957 26 3 0 chr12 14649825 14650173 -106607357 - L1Md_A LINE L1 -647 5935 5587 1 696 2792 54 0 0 chr12 14650187 14650536 -106606994 + L1Md_T LINE L1 6232 6580 -2 1 696 595 335 14 68 chr12 14650538 14650759 -106606771 - B4 SINE B4 -82 210 2 1 696 455 295 132 0 chr12 14650912 14651102 -106606428 + B3 SINE B2 2 216 0 1 696 1122 89 0 0 chr12 14651120 14651266 -106606264 - B1_Mus1 SINE Alu 0 148 3 1 696 258 81 0 0 chr12 14651475 14651512 -106606018 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 696 325 271 98 74 chr12 14653067 14653230 -106604300 - Charlie5 DNA MER1_type -94 2530 2364 1 696 1772 317 102 25 chr12 14655491 14656237 -106601293 - Lx8 LINE L1 -348 7125 6312 1 696 1401 88 0 0 chr12 14656237 14656429 -106601101 - L1_Mus1 LINE L1 0 6567 6376 1 696 1772 317 102 25 chr12 14656429 14656539 -106600991 - Lx8 LINE L1 -1162 6311 6203 1 696 613 271 106 26 chr12 14656561 14656826 -106600704 - Lx8 LINE L1 -8 7465 7180 2 696 24 32 0 0 chr12 14657420 14657451 -106600079 + AT_rich Low_complexity Low_complexity 1 31 0 2 696 228 149 0 0 chr12 14657672 14657719 -106599811 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 2 696 1705 36 18 9 chr12 14657724 14657947 -106599583 - L1Md_F3 LINE L1 0 6584 6360 2 696 22 0 0 0 chr12 14658613 14658635 -106598895 + AT_rich Low_complexity Low_complexity 1 22 0 2 696 248 330 28 19 chr12 14659061 14659169 -106598361 - PB1D7 SINE Alu -10 110 2 2 696 767 282 19 5 chr12 14659380 14659587 -106597943 - B3 SINE B2 -6 210 1 2 696 486 0 0 0 chr12 14660350 14660404 -106597126 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 696 1672 113 0 0 chr12 14661001 14661231 -106596299 - L1_Mus1 LINE L1 -152 5731 5502 2 696 6761 55 1 0 chr12 14661227 14662062 -106595468 + L1_Mus1 LINE L1 5732 6567 0 2 696 288 350 18 43 chr12 14662382 14662546 -106594984 + MLT2D LTR ERVL 15 174 -240 2 696 348 350 44 0 chr12 14663207 14663344 -106594186 + RSINE1 SINE B4 6 148 -17 2 696 201 156 0 0 chr12 14663357 14663389 -106594141 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2 696 393 75 0 0 chr12 14665379 14665432 -106592098 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 696 600 342 13 0 chr12 14665617 14665772 -106591758 + RSINE1 SINE B4 7 163 -2 2 696 541 264 71 94 chr12 14665854 14666109 -106591421 - Lx5 LINE L1 0 7050 6802 2 696 1130 117 6 0 chr12 14666138 14666317 -106591213 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 2 696 1389 108 0 3 chr12 14666317 14666918 -106590612 + (CAGG)n Simple_repeat Simple_repeat 1 599 0 2 696 19487 185 46 16 chr12 14666918 14671861 -106585669 - Lx5 LINE L1 -230 6820 1704 2 696 207 100 0 0 chr12 14673600 14673630 -106583900 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2 696 387 355 73 26 chr12 14674792 14674983 -106582547 + MTEb LTR MaLR 95 294 -85 2 696 585 253 89 12 chr12 14675077 14675245 -106582285 + Lx9 LINE L1 7175 7355 -289 2 696 761 40 10 0 chr12 14675249 14675350 -106582180 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 2 696 342 0 0 0 chr12 14675471 14675509 -106582021 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 696 250 182 0 18 chr12 14676215 14676271 -106581259 + GA-rich Low_complexity Low_complexity 2 56 0 2 696 1087 109 11 42 chr12 14676278 14676469 -106581061 - L1_Mus3 LINE L1 -1 6637 6453 2 10 37917 31 0 0 chr12 14676547 14682780 -106574750 - L1Md_T LINE L1 0 6585 255 2 697 968 300 132 9 chr12 14683851 14684298 -106573232 + Lx8 LINE L1 6823 7324 -149 2 697 2407 104 5 73 chr12 14684505 14684890 -106572640 - RLTR10D LTR ERVK 0 359 1 2 697 267 60 60 0 chr12 14685365 14685415 -106572115 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 697 494 318 193 72 chr12 14685443 14685696 -106571834 - B4A SINE B4 0 292 10 2 697 315 0 0 0 chr12 14686405 14686440 -106571090 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2 697 227 31 31 0 chr12 14686969 14687001 -106570529 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 2 697 21 89 0 0 chr12 14687291 14687347 -106570183 + AT_rich Low_complexity Low_complexity 1 56 0 2 697 204 290 0 0 chr12 14687658 14687720 -106569810 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 2 697 189 159 0 0 chr12 14687796 14687840 -106569690 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 697 2274 76 0 38 chr12 14688180 14688493 -106569037 - L1Md_F2 LINE L1 -112 6470 6170 2 697 719 94 0 17 chr12 14688500 14688619 -106568911 + L1Md_F2 LINE L1 6454 6570 -12 2 697 579 93 0 0 chr12 14689032 14689118 -106568412 + L1_Mus1 LINE L1 6482 6567 0 2 697 359 299 48 13 chr12 14689276 14689435 -106568095 + L1M2 LINE L1 4842 5065 -1078 2 697 921 44 0 0 chr12 14690043 14690157 -106567373 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 697 287 113 0 19 chr12 14691295 14691349 -106566181 + (ATG)n Simple_repeat Simple_repeat 1 53 0 2 697 420 328 36 46 chr12 14691419 14691614 -106565916 - B4A SINE B4 -30 262 70 2 697 234 174 0 0 chr12 14693417 14693463 -106564067 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 2 697 225 299 0 61 chr12 14693503 14693585 -106563945 + RMER12 LTR ERVK 733 809 -513 2 697 31 44 0 0 chr12 14693982 14694027 -106563503 + AT_rich Low_complexity Low_complexity 1 45 0 2 697 396 260 24 0 chr12 14695423 14695550 -106561980 - L1MA4 LINE L1 -382 5918 5789 2 697 529 200 12 6 chr12 14695561 14695722 -106561808 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 2 697 467 293 105 61 chr12 14695816 14696324 -106561206 - L1MA4 LINE L1 -509 5788 5271 2 697 198 0 0 0 chr12 14696481 14696503 -106561027 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 697 461 17 0 17 chr12 14696638 14696697 -106560833 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 2 697 219 36 0 0 chr12 14697108 14697136 -106560394 + (A)n Simple_repeat Simple_repeat 1 28 0 2 697 24 53 0 0 chr12 14697886 14697924 -106559606 + AT_rich Low_complexity Low_complexity 1 38 0 2 697 4224 123 19 11 chr12 14698582 14699248 -106558282 - L1_Mus3 LINE L1 0 6638 5967 2 697 16941 143 32 8 chr12 14699248 14702250 -106555280 + L1_Mm LINE L1 2599 5671 -212 2 697 273 287 60 135 chr12 14702561 14702694 -106554836 + B2_Mm2 SINE B2 2 124 -71 2 697 309 239 11 22 chr12 14702797 14702887 -106554643 - Lx8 LINE L1 -2 7471 7383 2 697 381 331 14 7 chr12 14702941 14703087 -106554443 + CT-rich Low_complexity Low_complexity 2 148 0 2 697 201 359 11 0 chr12 14703986 14704078 -106553452 + MIR SINE MIR 106 198 -64 2 697 677 337 26 19 chr12 14704254 14704523 -106553007 - B4 SINE B4 -18 274 4 2 697 7125 99 7 53 chr12 14704738 14705957 -106551573 - L1_Mus4 LINE L1 -5 6631 5457 2 697 449 223 0 0 chr12 14705968 14706062 -106551468 - Lx3_Mus LINE L1 -756 6253 6160 2 697 584 59 12 0 chr12 14706063 14706148 -106551382 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 2 697 243 165 45 45 chr12 14706300 14706482 -106551048 + (TCTA)n Simple_repeat Simple_repeat 1 182 0 2 697 21 0 0 0 chr12 14707954 14707975 -106549555 + AT_rich Low_complexity Low_complexity 1 21 0 2 697 256 242 39 55 chr12 14707975 14708102 -106549428 - Lx8 LINE L1 -4 7469 7345 2 697 659 321 116 23 chr12 14708236 14708634 -106548896 - Lx8 LINE L1 -49 7424 6990 2 697 3193 175 68 6 chr12 14708640 14708956 -106548574 - RMER6C LTR ERVK -5 685 350 2 697 776 98 8 0 chr12 14708956 14709089 -106548441 + (TC)n Simple_repeat Simple_repeat 1 134 0 2 697 3193 175 68 6 chr12 14709089 14709417 -106548113 - RMER6C LTR ERVK -341 349 1 2 697 943 318 146 4 chr12 14709418 14709885 -106547645 - Lx8 LINE L1 -480 6993 6461 2 697 428 35 17 0 chr12 14710661 14710719 -106546811 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 697 310 340 10 20 chr12 14710969 14711071 -106546459 + RSINE1 SINE B4 3 103 -62 2 697 10892 85 7 1 chr12 14711214 14712744 -106544786 - L1_Mm LINE L1 -1517 4366 2828 2 697 3964 77 2 2 chr12 14712742 14713289 -106544241 + L1Md_F2 LINE L1 3975 4521 -1362 2 697 2791 68 0 0 chr12 14713276 14713630 -106543900 + L1Md_F2 LINE L1 5233 5586 -297 2 697 7599 56 5 18 chr12 14713631 14714626 -106542904 + L1Md_F2 LINE L1 5588 6569 -13 2 697 3373 163 7 6 chr12 14715087 14715630 -106541900 + Lx2B LINE L1 6331 6874 -126 2 697 234 184 0 0 chr12 14716138 14716187 -106541343 + A-rich Low_complexity Low_complexity 1 49 0 2 697 245 212 162 0 chr12 14716458 14716538 -106540992 - Lx8 LINE L1 -2 7471 7379 2 697 189 214 0 0 chr12 14716540 14716582 -106540948 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 697 289 298 33 72 chr12 14716678 14716830 -106540700 + Lx8 LINE L1 5853 5998 -1475 2 697 348 311 128 24 chr12 14717542 14717832 -106539698 + L1MB8 LINE L1 5744 6063 -115 2 697 1221 325 10 8 chr12 14720271 14720662 -106536868 - Lx8 LINE L1 -885 6588 6197 2 697 2194 78 6 16 chr12 14721238 14721549 -106535981 + L1_Mus1 LINE L1 6260 6567 0 2 697 33 43 0 0 chr12 14722078 14722125 -106535405 + AT_rich Low_complexity Low_complexity 1 47 0 2 697 34884 75 2 3 chr12 14722648 14728875 -106528655 - L1Md_F2 LINE L1 0 6585 269 2 697 275 347 103 14 chr12 14729220 14729366 -106528164 - B3 SINE B2 -54 162 4 2 697 232 335 19 26 chr12 14729381 14729551 -106527979 - L1M4 LINE L1 -503 5681 5513 2 697 443 312 152 26 chr12 14729818 14730009 -106527521 + B4 SINE B4 15 229 -63 2 697 198 0 0 0 chr12 14730159 14730181 -106527349 + (T)n Simple_repeat Simple_repeat 1 22 0 2 697 192 77 0 0 chr12 14730279 14730305 -106527225 + (T)n Simple_repeat Simple_repeat 1 26 0 2 697 2177 48 4 0 chr12 14730316 14730587 -106526943 - L1Md_T LINE L1 0 6582 6311 2 697 360 311 92 35 chr12 14730592 14730852 -106526678 - L1M4 LINE L1 -2180 3966 3692 2 697 227 135 0 0 chr12 14730936 14730973 -106526557 - L1MC LINE L1 -2575 3571 3535 2 697 304 232 190 34 chr12 14731128 14731333 -106526197 - L1M4b LINE L1 -2799 4204 3968 2 697 518 244 53 0 chr12 14731598 14731729 -106525801 - B1_Mur1 SINE Alu -10 139 2 2 697 364 286 220 6 chr12 14731953 14732579 -106524951 - L1M4b LINE L1 -4023 3311 2552 2 697 376 141 0 0 chr12 14732834 14732898 -106524632 - Lx2B LINE L1 -1041 5959 5896 2 697 3648 158 68 22 chr12 14732903 14734152 -106523378 - Lx2 LINE L1 -806 6191 4845 2 697 247 262 12 36 chr12 14734166 14734249 -106523281 + L1MA6 LINE L1 6062 6142 -158 2 697 459 52 0 0 chr12 14734268 14734326 -106523204 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 697 344 379 46 26 chr12 14734388 14734583 -106522947 - B4A SINE B4 -86 206 8 2 697 909 267 30 0 chr12 14734627 14734829 -106522701 + B3 SINE B2 1 208 -8 2 697 21 36 0 0 chr12 14734830 14734858 -106522672 + AT_rich Low_complexity Low_complexity 1 28 0 2 697 296 266 32 16 chr12 14735021 14735147 -106522383 - L1M2 LINE L1 -915 5228 5101 2 697 28 48 0 0 chr12 14735206 14735248 -106522282 + AT_rich Low_complexity Low_complexity 1 42 0 2 697 198 171 0 0 chr12 14735967 14736008 -106521522 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 697 441 251 11 54 chr12 14736075 14736260 -106521270 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 2 697 621 131 0 0 chr12 14736329 14736436 -106521094 + (CA)n Simple_repeat Simple_repeat 2 108 0 2 697 650 211 212 12 chr12 14736871 14737121 -106520409 + Lx9 LINE L1 7340 7639 -5 3 697 411 281 0 0 chr12 14738063 14738145 -106519385 - B1F SINE Alu -41 108 27 3 697 404 68 13 52 chr12 14738261 14738338 -106519192 + Lx LINE L1 6577 6650 -4 3 697 4374 173 72 8 chr12 14739063 14739892 -106517638 + Lx4A LINE L1 6172 7053 -5 3 697 180 237 143 76 chr12 14741907 14742012 -106515518 - MER5B DNA MER1_type -63 115 4 3 697 436 182 52 0 chr12 14742770 14742847 -106514683 - LSU-rRNA_Hsa rRNA rRNA -3021 2014 1934 3 697 475 361 38 0 chr12 14743211 14743369 -106514161 + B4 SINE B4 56 219 -73 3 697 386 159 0 9 chr12 14743451 14743559 -106513971 + GA-rich Low_complexity Low_complexity 2 108 0 3 697 294 296 116 0 chr12 14743846 14743938 -106513592 + B4 SINE B4 97 203 -89 3 697 1540 284 55 20 chr12 14743940 14744447 -106513083 + Lx9 LINE L1 6738 7262 -382 3 697 216 380 0 0 chr12 14744451 14744522 -106513008 - ID SINE ID -152 72 2 3 697 360 275 88 0 chr12 14745189 14745280 -106512250 + Lx8 LINE L1 6826 6924 -549 3 697 581 332 89 7 chr12 14745295 14745565 -106511965 + Lx8 LINE L1 7037 7328 -145 3 697 435 226 128 5 chr12 14746085 14746155 -106511375 + Lx9 LINE L1 7425 7504 -140 3 697 387 0 0 0 chr12 14746155 14746198 -106511332 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 697 435 226 128 5 chr12 14746198 14746323 -106511207 + Lx9 LINE L1 7505 7644 0 3 697 496 0 31 0 chr12 14746331 14746395 -106511135 + (TAAAA)n Simple_repeat Simple_repeat 2 67 0 3 697 423 0 0 0 chr12 14746909 14746956 -106510574 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 697 552 329 73 9 chr12 14747117 14747267 -106510263 - B4A SINE B4 -43 249 87 3 697 384 22 0 0 chr12 14747267 14747312 -106510218 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 697 552 329 73 9 chr12 14747312 14747394 -106510136 - B4A SINE B4 -206 86 3 3 697 22 80 0 0 chr12 14747610 14747660 -106509870 + AT_rich Low_complexity Low_complexity 1 50 0 3 697 22 35 0 0 chr12 14747851 14747880 -106509650 + AT_rich Low_complexity Low_complexity 1 29 0 3 697 1308 176 84 9 chr12 14748492 14748825 -106508705 - Lx9 LINE L1 -1 7643 7286 3 697 30 69 0 0 chr12 14749126 14749184 -106508346 + AT_rich Low_complexity Low_complexity 1 58 0 3 697 229 390 49 65 chr12 14749228 14749412 -106508118 - MLT1F LTR MaLR -135 413 233 3 697 1998 12 177 0 chr12 14749473 14749721 -106507809 + RLTR10B LTR ERVK 1 292 0 3 697 309 51 0 0 chr12 14750098 14750137 -106507393 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 697 1001 330 108 7 chr12 14750299 14750861 -106506669 - Lx8 LINE L1 -1 7472 6854 3 697 835 189 0 0 chr12 14751603 14751762 -106505768 - Lx2 LINE L1 -46 6951 6793 3 697 22 70 0 0 chr12 14751908 14751951 -106505579 + AT_rich Low_complexity Low_complexity 1 43 0 3 697 333 140 0 0 chr12 14752619 14752676 -106504854 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 697 564 45 22 11 chr12 14753090 14753179 -106504351 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 3 697 380 366 102 15 chr12 14753256 14753581 -106503949 - L1MC3 LINE L1 -197 7588 7236 3 697 215 284 104 0 chr12 14754256 14754323 -106503207 - MIRc SINE MIR -114 154 81 3 697 327 323 113 25 chr12 14754349 14754508 -106503022 - MIRb SINE MIR -53 215 43 3 697 293 354 51 58 chr12 14754990 14755128 -106502402 - B1_Mur2 SINE Alu 0 149 13 3 697 1343 259 93 31 chr12 14755168 14755295 -106502235 - Lx9 LINE L1 -5 7639 7504 3 697 450 0 0 0 chr12 14755295 14755345 -106502185 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 697 1343 259 93 31 chr12 14755345 14755702 -106501828 - Lx9 LINE L1 -141 7503 7125 3 697 596 278 0 0 chr12 14755708 14755859 -106501671 - Lx9 LINE L1 -428 7216 7066 3 697 216 0 0 0 chr12 14757519 14757543 -106499987 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 697 1009 219 152 4 chr12 14758231 14758501 -106499029 - Lx4B LINE L1 -120 6938 6629 3 697 390 281 18 36 chr12 14758501 14758667 -106498863 + GA-rich Low_complexity Low_complexity 1 163 0 3 697 543 323 101 28 chr12 14758685 14759114 -106498416 + MER44B DNA MER2_type 1 546 -4 3 697 3673 155 98 33 chr12 14759405 14760253 -106497277 + RMER17A2 LTR ERVK 1 903 -3 3 697 292 333 48 24 chr12 14760844 14760970 -106496560 + ORR1E LTR MaLR 1 129 -230 3 697 1694 299 95 40 chr12 14762036 14762778 -106494752 + RMER13A LTR ERVK 1 821 -39 3 697 2381 127 24 17 chr12 14763181 14763599 -106493931 + BGLII LTR ERVK 1 421 0 3 697 300 233 43 22 chr12 14763681 14763773 -106493757 - MTD LTR MaLR -31 388 295 3 697 1044 71 43 0 chr12 14763935 14764076 -106493454 + B1_Mm SINE Alu 1 147 0 3 697 927 177 141 0 chr12 14764311 14764509 -106493021 - URR1A DNA MER1_type 0 226 1 3 697 4293 18 0 0 chr12 14765308 14765797 -106491733 - L1Md_T LINE L1 -100 5783 5295 3 697 6691 33 0 0 chr12 14765797 14766587 -106490943 + L1Md_T LINE L1 5793 6582 0 3 697 369 62 0 0 chr12 14766603 14766651 -106490879 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 697 23 54 0 0 chr12 14766663 14766700 -106490830 + AT_rich Low_complexity Low_complexity 1 37 0 3 697 609 158 27 19 chr12 14766963 14767195 -106490335 - RMER17A2 LTR ERVK 0 809 552 3 697 4232 77 6 0 chr12 14767195 14767743 -106489787 - L1_Mus1 LINE L1 -306 6261 5711 3 697 2147 90 7 0 chr12 14767743 14768044 -106489486 + L1_Mus1 LINE L1 6265 6567 0 3 697 2884 135 86 20 chr12 14768050 14768600 -106488930 - RMER17A2 LTR ERVK -316 590 5 3 697 1405 322 27 27 chr12 14769829 14770426 -106487104 + Lx8 LINE L1 6729 7325 -148 3 697 231 88 0 0 chr12 14770925 14770959 -106486571 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 697 336 24 0 0 chr12 14770975 14771016 -106486514 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 697 337 297 95 63 chr12 14771450 14771479 -106486051 - MLT1A0 LTR MaLR -17 348 324 3 697 5024 142 11 64 chr12 14771479 14772431 -106485099 - RLTR13D6 LTR ERVK 0 902 2 3 697 337 297 95 63 chr12 14772431 14772559 -106484971 - MLT1A0 LTR MaLR -42 323 186 3 697 1047 279 95 26 chr12 14772607 14772953 -106484577 - ORR1D1 LTR MaLR -4 370 1 3 697 379 274 0 0 chr12 14772953 14773045 -106484485 - MLT1A0 LTR MaLR -237 128 37 3 697 22 0 0 0 chr12 14773700 14773722 -106483808 + AT_rich Low_complexity Low_complexity 1 22 0 3 697 207 291 19 10 chr12 14773941 14774045 -106483485 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 697 22 0 0 0 chr12 14775293 14775315 -106482215 + AT_rich Low_complexity Low_complexity 1 22 0 3 697 309 301 172 50 chr12 14775867 14776105 -106481425 + L1MA6 LINE L1 4800 5066 -1077 3 697 534 271 81 12 chr12 14776140 14776312 -106481218 - B3A SINE B2 -3 195 12 3 697 332 300 98 92 chr12 14776307 14776618 -106480912 + MTEb LTR MaLR 28 379 0 3 697 748 278 39 20 chr12 14776628 14776974 -106480556 + L1MA6 LINE L1 5597 5962 -329 3 697 306 315 79 47 chr12 14776985 14777175 -106480355 + B3A SINE B2 3 198 0 3 697 910 279 49 139 chr12 14777403 14777912 -106479618 - RLTR12B LTR ERVK -42 486 24 3 697 307 364 49 0 chr12 14778060 14778222 -106479308 - L1M3c LINE L1 -5788 353 184 3 697 231 114 0 0 chr12 14778814 14778849 -106478681 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 697 22 35 0 0 chr12 14778890 14778919 -106478611 + AT_rich Low_complexity Low_complexity 1 29 0 3 697 543 296 0 29 chr12 14779197 14779333 -106478197 + RSINE1 SINE B4 3 134 -31 3 697 192 40 0 0 chr12 14779343 14779368 -106478162 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 697 433 354 75 26 chr12 14779568 14779849 -106477681 + Kanga1b DNA Tc2 19 324 -455 3 697 2885 120 14 2 chr12 14781825 14782350 -106475180 + Lx LINE L1 5498 6028 -626 3 697 186 189 0 0 chr12 14782470 14782507 -106475023 + T-rich Low_complexity Low_complexity 3 39 0 3 697 230 67 0 0 chr12 14782517 14782562 -106474968 - L1_Mus4 LINE L1 -3 6633 6589 3 697 291 202 0 0 chr12 14783249 14783333 -106474197 + GA-rich Low_complexity Low_complexity 2 85 0 3 697 320 18 0 66 chr12 14783448 14783509 -106474021 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 3 697 34 0 0 0 chr12 14783514 14783548 -106473982 + AT_rich Low_complexity Low_complexity 1 34 0 3 697 337 328 238 9 chr12 14783585 14783921 -106473609 - L1MA6 LINE L1 -43 6257 5845 3 697 641 272 75 6 chr12 14783957 14784131 -106473399 - MTE2b LTR MaLR 0 379 194 3 697 752 203 201 0 chr12 14784134 14784403 -106473127 - ORR1C2 LTR MaLR 0 384 21 3 697 459 335 12 6 chr12 14784411 14784579 -106472951 - MTE2b LTR MaLR -192 187 19 3 697 999 312 114 22 chr12 14784650 14785096 -106472434 - MTE2b-int LTR MaLR 0 1580 1094 3 697 310 345 11 0 chr12 14785135 14785222 -106472308 - MTE2b LTR MaLR -271 88 1 3 697 22 0 0 0 chr12 14785298 14785320 -106472210 + AT_rich Low_complexity Low_complexity 1 22 0 3 697 2313 60 66 0 chr12 14785576 14785893 -106471637 + ORR1A1 LTR MaLR 1 338 -8 3 697 246 22 64 21 chr12 14786690 14786737 -106470793 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 697 1066 96 0 0 chr12 14786742 14786888 -106470642 - B1_Mm SINE Alu 0 147 2 3 697 657 185 0 0 chr12 14787905 14788083 -106469447 + CT-rich Low_complexity Low_complexity 2 179 0 3 697 339 78 0 0 chr12 14788108 14788159 -106469371 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 697 21 36 0 0 chr12 14789291 14789319 -106468211 + AT_rich Low_complexity Low_complexity 1 28 0 3 697 1731 342 74 36 chr12 14789372 14790344 -106467186 - Lx8 LINE L1 -68 7405 6382 3 697 3638 43 7 0 chr12 14790344 14790787 -106466743 - L1Md_F3 LINE L1 -16 6568 6123 3 697 1444 70 5 0 chr12 14790791 14790978 -106466552 + B2_Mm1t SINE B2 1 188 -5 3 697 1731 342 74 36 chr12 14790978 14791155 -106466375 - Lx8 LINE L1 -1092 6381 6208 3 697 307 158 19 19 chr12 14791184 14791287 -106466243 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 3 697 1862 137 95 71 chr12 14791703 14792167 -106465363 - IAPLTR2_Mm LTR ERVK 0 475 1 3 697 206 229 14 0 chr12 14792348 14792418 -106465112 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 697 716 217 34 73 chr12 14793569 14793773 -106463757 - B3A SINE B2 -2 196 1 3 697 501 212 176 16 chr12 14794050 14794232 -106463298 + B3 SINE B2 2 212 -4 3 697 1793 231 153 57 chr12 14794245 14794788 -106462742 + Lx4A LINE L1 6447 7041 -17 3 697 22 0 0 0 chr12 14795533 14795555 -106461975 + AT_rich Low_complexity Low_complexity 1 22 0 3 697 255 322 84 8 chr12 14795873 14795992 -106461538 - Cheshire DNA MER1_type -2175 245 118 3 697 1085 98 0 0 chr12 14796008 14796151 -106461379 + B1_Mus1 SINE Alu 2 144 -4 4 697 25 31 0 0 chr12 14796213 14796245 -106461285 + AT_rich Low_complexity Low_complexity 1 32 0 4 697 248 330 10 71 chr12 14797019 14797117 -106460413 + RSINE1 SINE B4 5 96 -69 4 697 609 14 0 0 chr12 14797191 14797261 -106460269 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 4 697 1167 62 7 0 chr12 14797261 14797407 -106460123 + B1_Mus2 SINE Alu 1 147 0 4 697 38478 6 0 1 chr12 14797680 14803468 -106454062 + L1Md_A LINE L1 1 5586 -297 4 697 8947 4 1 0 chr12 14803468 14804463 -106453067 + L1Md_A LINE L1 5587 6582 0 4 697 1098 216 9 14 chr12 14805503 14805724 -106451806 + URR1A DNA MER1_type 1 220 -6 4 697 558 0 0 0 chr12 14806990 14807052 -106450478 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 697 558 351 58 65 chr12 14807055 14807332 -106450198 - B4 SINE B4 -16 276 2 4 697 276 369 349 18 chr12 14807334 14807567 -106449963 + MER54B LTR ERVL 434 743 -50 4 697 22 35 0 0 chr12 14808859 14808888 -106448642 + AT_rich Low_complexity Low_complexity 1 29 0 4 697 288 200 40 0 chr12 14808979 14809054 -106448476 + L1M2 LINE L1 4316 4393 -1750 4 697 3408 89 18 12 chr12 14809789 14810278 -106447252 + L1_Mus2 LINE L1 6075 6566 0 4 697 22 0 0 0 chr12 14810278 14810300 -106447230 + AT_rich Low_complexity Low_complexity 1 22 0 4 87 6657 41 2 10 chr12 14810940 14811770 -106445760 - L1Md_F2 LINE L1 -12 6570 5747 4 698 8078 139 33 22 chr12 14812020 14813680 -106443850 - Lx2 LINE L1 -1 6996 5314 4 698 200 308 0 0 chr12 14814666 14814718 -106442812 + GA-rich Low_complexity Low_complexity 4 55 0 4 698 185 35 0 65 chr12 14814719 14814750 -106442780 + (CAGAGA)n Simple_repeat Simple_repeat 5 33 0 4 698 226 257 19 0 chr12 14815686 14815791 -106441739 + GA-rich Low_complexity Low_complexity 2 108 0 4 698 730 256 39 6 chr12 14817140 14817321 -106440209 - B3 SINE B2 -2 214 28 4 698 513 68 0 0 chr12 14817324 14817398 -106440132 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 698 276 288 89 89 chr12 14817432 14817600 -106439930 - Charlie12 DNA MER1_type -2698 175 8 4 698 305 368 84 52 chr12 14817691 14818052 -106439478 + MLT1C LTR MaLR 31 459 -8 4 698 1958 174 8 3 chr12 14818201 14818552 -106438978 - Lx2B LINE L1 -3 6997 6645 4 698 745 265 33 6 chr12 14818553 14818735 -106438795 - B3 SINE B2 -2 214 28 4 698 6383 139 24 27 chr12 14818740 14819917 -106437613 - Lx2B LINE L1 -355 6645 5475 4 698 269 272 31 42 chr12 14820374 14820470 -106437060 + MER67A LTR ERV1 1 95 -448 4 698 706 341 125 50 chr12 14820462 14821036 -106436494 + MER67B LTR ERV1 24 640 -21 4 698 334 323 53 72 chr12 14823126 14823333 -106434197 - L1M5 LINE L1 -2382 3764 3562 4 698 5280 77 8 99 chr12 14823966 14824817 -106432713 - L1_Mus2 LINE L1 -6 6560 5787 4 698 2896 95 0 32 chr12 14824817 14825252 -106432278 + L1_Mm LINE L1 4844 5264 -619 4 698 17158 120 12 2 chr12 14825249 14826664 -106430866 - L1Md_F LINE L1 -1890 3993 2564 4 698 375 23 0 0 chr12 14826664 14826708 -106430822 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 698 17158 120 12 2 chr12 14826708 14826804 -106430726 - L1Md_F LINE L1 -3320 2563 2464 4 698 222 37 0 0 chr12 14826804 14826831 -106430699 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 698 17158 144 20 35 chr12 14826831 14828935 -106428595 - L1Md_F LINE L1 -3420 2463 184 4 698 396 287 67 94 chr12 14829035 14829543 -106427987 - L1M2 LINE L1 -2657 3486 2993 4 698 643 212 192 54 chr12 14829960 14830199 -106427331 + RLTR10A LTR ERVK 140 411 0 4 698 230 281 0 0 chr12 14832328 14832385 -106425145 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 698 286 241 46 46 chr12 14832452 14832539 -106424991 + MLT1D LTR MaLR 101 187 -318 4 698 29 0 0 0 chr12 14833519 14833548 -106423982 + AT_rich Low_complexity Low_complexity 1 29 0 4 698 36 77 0 0 chr12 14834501 14834579 -106422951 + AT_rich Low_complexity Low_complexity 1 78 0 4 698 331 222 12 0 chr12 14834863 14834965 -106422565 + L1_Mur3 LINE L1 4503 4605 -1272 4 698 483 304 19 19 chr12 14835040 14835201 -106422329 + L1_Mur1 LINE L1 5505 5665 -221 4 698 706 309 89 7 chr12 14835195 14835488 -106422042 + Lx8 LINE L1 7125 7441 -32 4 698 339 310 132 45 chr12 14835583 14836167 -106421363 + L1MC3 LINE L1 5695 6329 -1456 4 698 216 171 0 68 chr12 14836933 14836977 -106420553 + G-rich Low_complexity Low_complexity 1 41 0 4 698 300 367 33 7 chr12 14836977 14837128 -106420402 + HAL1-3A_ME LINE L1 2285 2439 -419 4 698 741 96 0 23 chr12 14837129 14837257 -106420273 + (GAA)n Simple_repeat Simple_repeat 1 125 0 4 698 600 40 0 0 chr12 14837257 14837332 -106420198 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 4 698 263 309 103 27 chr12 14837752 14837975 -106419555 + L1MC3 LINE L1 6915 7154 -631 4 698 231 88 0 0 chr12 14838222 14838256 -106419274 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 698 252 0 0 0 chr12 14838324 14838352 -106419178 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 698 531 276 14 27 chr12 14838440 14838660 -106418870 + Lx9 LINE L1 7301 7517 -127 4 698 210 233 0 0 chr12 14838677 14838720 -106418810 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 698 254 270 17 34 chr12 14838742 14838861 -106418669 + Lx9 LINE L1 7524 7640 -4 4 698 203 88 29 0 chr12 14838962 14838996 -106418534 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 698 504 355 59 77 chr12 14839240 14839783 -106417747 + MT2A LTR ERVL 1 533 0 4 698 180 222 28 0 chr12 14840242 14840278 -106417252 - MIRm SINE MIR -165 111 75 4 698 2718 38 6 0 chr12 14840912 14841254 -106416276 - ORR1A1 LTR MaLR -2 344 1 4 698 288 0 0 0 chr12 14841430 14841462 -106416068 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 698 1231 110 55 0 chr12 14841949 14842131 -106415399 - B2_Mm2 SINE B2 -1 194 3 4 698 251 243 103 37 chr12 14842814 14842921 -106414609 - L1M5 LINE L1 -2315 3831 3718 4 698 800 173 14 0 chr12 14843252 14843391 -106414139 - B1_Mus1 SINE Alu -6 142 2 4 698 26 0 0 0 chr12 14843429 14843455 -106414075 + AT_rich Low_complexity Low_complexity 1 26 0 4 698 221 139 23 0 chr12 14843512 14843555 -106413975 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 698 321 26 0 0 chr12 14844058 14844096 -106413434 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 698 197 379 79 0 chr12 14844138 14844278 -106413252 - MIR SINE MIR -61 201 51 4 698 24 32 0 0 chr12 14844337 14844368 -106413162 + AT_rich Low_complexity Low_complexity 1 31 0 4 698 200 275 131 16 chr12 14845030 14845152 -106412378 + MIRm SINE MIR 130 265 -3 4 698 332 41 41 0 chr12 14845962 14846011 -106411519 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 4 698 180 77 0 0 chr12 14846012 14846038 -106411492 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 698 21 36 0 0 chr12 14846072 14846100 -106411430 + AT_rich Low_complexity Low_complexity 1 28 0 4 698 25 0 0 0 chr12 14846223 14846248 -106411282 + AT_rich Low_complexity Low_complexity 1 25 0 4 698 213 132 0 0 chr12 14846652 14846690 -106410840 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 698 321 298 63 24 chr12 14847393 14847520 -106410010 - RMER15 LTR ERVL -14 561 430 4 698 213 299 26 0 chr12 14847925 14848002 -106409528 - L2 LINE L2 -1039 2380 2302 4 698 833 327 69 29 chr12 14848059 14848344 -106409186 + MTE2a LTR MaLR 6 299 -80 4 698 2020 139 18 15 chr12 14848344 14848672 -106408858 - ORR1A4 LTR MaLR 0 329 1 4 698 833 327 69 29 chr12 14848672 14848732 -106408798 + MTE2a LTR MaLR 300 365 -14 4 698 31 0 0 0 chr12 14848936 14848967 -106408563 + AT_rich Low_complexity Low_complexity 1 31 0 4 698 1743 261 89 27 chr12 14849108 14849887 -106407643 - L1_Rod LINE L1 -550 5297 4471 4 698 28 48 0 0 chr12 14849915 14849957 -106407573 + AT_rich Low_complexity Low_complexity 1 42 0 4 698 7951 38 1 10 chr12 14850107 14851186 -106406344 - L1Md_F2 LINE L1 -3 6579 5509 4 698 26954 31 2 9 chr12 14851185 14855228 -106402302 - L1Md_F2 LINE L1 -1440 4443 437 4 698 960 242 9 9 chr12 14855262 14855487 -106402043 + URR1B DNA MER1_type 1 225 0 4 698 273 176 26 26 chr12 14855848 14855924 -106401606 - Lx9 LINE L1 -77 7567 7492 4 698 321 164 0 0 chr12 14855924 14855997 -106401533 + GA-rich Low_complexity Low_complexity 1 73 0 4 698 1876 341 53 26 chr12 14855997 14856942 -106400588 - Lx9 LINE L1 -180 7464 6495 4 698 310 248 64 9 chr12 14856929 14857039 -106400491 + L1M LINE L1 5284 5399 -901 4 698 340 271 90 3 chr12 14857128 14857298 -106400232 + L1M2 LINE L1 4268 4496 -1647 4 698 10491 34 4 11 chr12 14857275 14858783 -106398747 + L1Md_A LINE L1 4329 6582 0 4 698 8188 41 1 0 chr12 14858800 14859791 -106397739 + L1Md_A LINE L1 5587 6578 -4 4 698 35 0 0 0 chr12 14859819 14859854 -106397676 + AT_rich Low_complexity Low_complexity 1 35 0 4 698 639 314 118 46 chr12 14859854 14860563 -106396967 - L1MB7 LINE L1 -43 6141 5377 4 698 420 71 0 0 chr12 14860563 14860619 -106396911 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 698 639 314 118 46 chr12 14860619 14860691 -106396839 - L1MB7 LINE L1 -808 5376 5304 4 698 3658 128 45 14 chr12 14860730 14861323 -106396207 - Lx3A LINE L1 -9 6972 6361 4 698 354 212 19 0 chr12 14861336 14861448 -106396082 - L1MB7 LINE L1 -837 5309 5194 4 698 2906 36 8 3 chr12 14861510 14861867 -106395663 + L1Md_F3 LINE L1 6226 6584 0 4 698 289 79 0 0 chr12 14861871 14861909 -106395621 - B2_Mm2 SINE B2 -156 39 2 4 698 494 384 72 31 chr12 14862015 14862472 -106395058 - L1M4 LINE L1 -5966 576 101 4 698 761 275 12 0 chr12 14863127 14863298 -106394232 + B3 SINE B2 33 205 -11 4 698 274 350 24 42 chr12 14863336 14863503 -106394027 + RSINE1 SINE B4 2 165 0 4 698 24 0 0 0 chr12 14863809 14863833 -106393697 + AT_rich Low_complexity Low_complexity 1 24 0 4 698 883 207 28 0 chr12 14864607 14864786 -106392744 - Lx9 LINE L1 -620 7024 6841 4 698 507 176 129 65 chr12 14864787 14864988 -106392542 + Lx9 LINE L1 7416 7629 -15 4 698 309 51 0 0 chr12 14864990 14865029 -106392501 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 698 1123 68 0 0 chr12 14865032 14865180 -106392350 + B1_Mus1 SINE Alu 1 148 0 4 698 402 108 0 56 chr12 14865180 14865288 -106392242 + (CAA)n Simple_repeat Simple_repeat 1 102 0 4 698 372 293 188 11 chr12 14868034 14868210 -106389320 + B4A SINE B4 82 288 -4 5 698 225 167 0 0 chr12 14868400 14868442 -106389088 + GA-rich Low_complexity Low_complexity 1 42 0 5 698 531 0 0 0 chr12 14868458 14868517 -106389013 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 5 698 1160 62 7 0 chr12 14868520 14868665 -106388865 + B1_Mus1 SINE Alu 1 146 -2 5 698 559 159 9 9 chr12 14868677 14868791 -106388739 + GA-rich Low_complexity Low_complexity 1 114 0 5 698 24 32 0 0 chr12 14868848 14868879 -106388651 + AT_rich Low_complexity Low_complexity 1 31 0 5 698 240 343 40 99 chr12 14869566 14869767 -106387763 - MLT1B LTR MaLR -131 259 71 5 698 331 222 12 47 chr12 14869976 14870061 -106387469 + HAL1-3A_ME LINE L1 1976 2057 -801 5 698 216 327 18 0 chr12 14870220 14870275 -106387255 - B1_Mur1 SINE Alu -30 119 64 5 698 25 31 0 0 chr12 14870496 14870528 -106387002 + AT_rich Low_complexity Low_complexity 1 32 0 5 698 372 180 198 11 chr12 14871020 14871128 -106386402 - RMER19B LTR ERVK -490 412 308 5 698 7609 187 52 22 chr12 14871130 14872766 -106384764 - L1_Mur3 LINE L1 -2148 3732 2058 5 698 383 87 0 14 chr12 14872766 14872836 -106384694 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 698 7609 187 52 22 chr12 14872836 14872995 -106384535 - L1_Mur3 LINE L1 -3823 2057 1883 5 698 788 299 9 0 chr12 14873007 14873221 -106384309 + Lx6 LINE L1 7109 7324 -136 5 698 6720 71 15 16 chr12 14873221 14874140 -106383390 - L1_Mus2 LINE L1 0 6566 5649 5 698 515 218 6 64 chr12 14874142 14874237 -106383293 + Lx6 LINE L1 7308 7399 -61 5 698 4459 120 133 19 chr12 14874237 14875033 -106382497 - RMER17D LTR ERVK -2 887 1 5 698 515 218 6 64 chr12 14875033 14875094 -106382436 + Lx6 LINE L1 7400 7455 -5 5 698 195 69 0 0 chr12 14879725 14879754 -106377776 + (T)n Simple_repeat Simple_repeat 1 29 0 5 698 21 71 0 0 chr12 14880058 14880100 -106377430 + AT_rich Low_complexity Low_complexity 1 42 0 5 698 351 0 0 0 chr12 14880124 14880163 -106377367 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 698 25 65 0 0 chr12 14880259 14880305 -106377225 + AT_rich Low_complexity Low_complexity 1 46 0 5 698 21 0 0 0 chr12 14880318 14880339 -106377191 + AT_rich Low_complexity Low_complexity 1 21 0 5 698 242 271 0 0 chr12 14880517 14880565 -106376965 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 698 525 16 0 0 chr12 14880981 14881043 -106376487 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 698 306 0 0 0 chr12 14881064 14881098 -106376432 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 698 297 0 0 0 chr12 14881098 14881130 -106376400 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 698 270 56 0 0 chr12 14881561 14881597 -106375933 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 698 202 266 35 71 chr12 14882218 14882303 -106375227 + MIRb SINE MIR 143 224 -44 5 698 603 93 41 0 chr12 14883817 14883914 -106373616 - B1_Mus2 SINE Alu 0 147 47 5 698 853 111 88 15 chr12 14884482 14884619 -106372911 - B1_Mm SINE Alu 0 147 1 5 698 29 0 0 0 chr12 14884913 14884942 -106372588 + AT_rich Low_complexity Low_complexity 1 29 0 5 698 728 79 30 0 chr12 14885303 14885404 -106372126 + U6 snRNA snRNA 4 107 0 5 698 2399 69 78 0 chr12 14885404 14885737 -106371793 + L1_Mus2 LINE L1 6207 6565 -1 5 698 383 297 8 15 chr12 14886127 14886257 -106371273 - MLT1K LTR MaLR -8 587 459 5 698 686 212 216 11 chr12 14887044 14887225 -106370305 - ORR1C2 LTR MaLR 0 384 167 5 698 215 151 20 61 chr12 14887233 14887332 -106370198 + (CAGAGA)n Simple_repeat Simple_repeat 4 98 0 5 698 987 212 0 16 chr12 14887340 14887527 -106370003 - ORR1C2 LTR MaLR -190 194 11 5 698 441 0 0 0 chr12 14887528 14887577 -106369953 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 698 539 322 65 10 chr12 14888174 14888375 -106369155 - ID_B1 SINE B4 -11 213 2 5 698 447 19 0 0 chr12 14888758 14888810 -106368720 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 698 892 271 10 10 chr12 14889108 14889317 -106368213 + B3 SINE B2 7 215 -1 5 698 2734 181 92 23 chr12 14891478 14892084 -106365446 - RMER6A LTR ERVK 0 756 109 5 698 225 103 0 0 chr12 14892477 14892516 -106365014 - B3 SINE B2 0 216 178 5 698 3386 178 71 6 chr12 14893512 14894147 -106363383 - Lx5 LINE L1 -122 6928 6253 5 698 1031 212 13 36 chr12 14894198 14894423 -106363107 - URR1A DNA MER1_type -3 223 4 5 698 607 318 17 28 chr12 14894428 14894606 -106362924 - B4 SINE B4 -114 178 3 5 698 393 147 32 0 chr12 14894952 14895047 -106362483 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 5 698 342 0 0 0 chr12 14895179 14895217 -106362313 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 698 360 0 0 0 chr12 14896476 14896516 -106361014 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 698 387 0 0 0 chr12 14896516 14896558 -106360972 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 698 374 273 55 60 chr12 14896575 14896774 -106360756 + Lx7 LINE L1 7455 7652 -44 5 698 351 308 50 65 chr12 14896912 14897051 -106360479 + B4A SINE B4 5 141 -151 5 698 5294 116 19 58 chr12 14897055 14897987 -106359543 - RLTR13D6 LTR ERVK -32 870 1 5 698 225 0 0 0 chr12 14898169 14898194 -106359336 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 698 255 312 37 12 chr12 14898660 14898741 -106358789 + ID4_ SINE ID 1 83 0 5 698 22 35 0 0 chr12 14898887 14898916 -106358614 + AT_rich Low_complexity Low_complexity 1 29 0 5 698 22 56 0 0 chr12 14899360 14899396 -106358134 + AT_rich Low_complexity Low_complexity 1 36 0 5 698 369 0 0 0 chr12 14899596 14899637 -106357893 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 698 1685 196 38 83 chr12 14899652 14900047 -106357483 + ORR1C2 LTR MaLR 8 384 0 5 698 907 322 116 53 chr12 14901176 14901779 -106355751 - Lx8 LINE L1 -566 6907 6267 5 698 21 0 0 0 chr12 14901849 14901870 -106355660 + AT_rich Low_complexity Low_complexity 1 21 0 5 698 356 200 0 101 chr12 14901891 14901980 -106355550 + Lx7 LINE L1 5927 6006 -1690 5 698 669 243 0 0 chr12 14901982 14902284 -106355246 + (TATG)n Simple_repeat Simple_repeat 1 302 0 5 698 2876 259 56 9 chr12 14902301 14903070 -106354460 + Lx7 LINE L1 6037 6841 -855 5 698 1610 225 123 31 chr12 14903073 14903554 -106353976 - RLTR11A2 LTR ERVK 0 527 3 5 698 993 204 57 22 chr12 14903560 14903790 -106353740 + Lx7 LINE L1 6844 7081 -615 5 698 1049 128 24 15 chr12 14903794 14903991 -106353539 - LTRIS2 LTR ERV1 0 587 391 5 698 1692 232 18 142 chr12 14904448 14904781 -106352749 + Lx7 LINE L1 7111 7384 -312 5 698 3649 11 131 0 chr12 14904781 14905217 -106352313 + MT2_Mm LTR ERVL 1 493 0 5 698 1692 232 18 142 chr12 14905217 14905552 -106351978 + Lx7 LINE L1 7385 7696 0 5 698 444 37 0 0 chr12 14906823 14906877 -106350653 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 698 23 33 0 0 chr12 14907619 14907649 -106349881 + AT_rich Low_complexity Low_complexity 1 30 0 5 698 189 74 0 0 chr12 14907782 14907809 -106349721 + (T)n Simple_repeat Simple_repeat 1 27 0 5 698 1122 88 0 0 chr12 14907819 14907966 -106349564 - B1_Mus2 SINE Alu 0 147 1 5 698 740 342 4 40 chr12 14907994 14908268 -106349262 - Lx8 LINE L1 -124 7349 7086 5 698 534 275 45 8 chr12 14908271 14908403 -106349127 + ETnERV2-int LTR ERVK 7066 7202 -204 5 698 225 323 10 0 chr12 14909228 14909327 -106348203 + (TATG)n Simple_repeat Simple_repeat 4 103 0 5 698 271 89 0 0 chr12 14909453 14909498 -106348032 - Lx3_Mus LINE L1 -8 7001 6957 5 698 419 299 93 20 chr12 14909577 14909823 -106347707 - L1M5 LINE L1 -3177 2969 2706 5 698 31 82 0 0 chr12 14909921 14909994 -106347536 + AT_rich Low_complexity Low_complexity 1 73 0 5 698 266 319 43 0 chr12 14910022 14910163 -106347367 - L1MA6 LINE L1 -49 6251 6105 5 698 3083 102 22 2 chr12 14910298 14910758 -106346772 + L1_Mus3 LINE L1 6162 6630 -8 5 698 26 0 0 0 chr12 14910758 14910784 -106346746 + AT_rich Low_complexity Low_complexity 1 26 0 5 698 5237 132 64 8 chr12 14910925 14911834 -106345696 + RMER17B LTR ERVK 1 930 -28 5 698 2874 82 5 0 chr12 14911885 14912263 -106345267 - L1_Mus1 LINE L1 -116 6451 6072 5 698 1328 48 0 0 chr12 14912261 14912426 -106345104 + L1Md_F2 LINE L1 5894 6058 -524 5 698 351 285 73 0 chr12 14912431 14912568 -106344962 - L1MA6 LINE L1 -523 5768 5622 5 698 279 0 0 0 chr12 14912663 14912694 -106344836 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 698 478 269 24 60 chr12 14912708 14912874 -106344656 - RSINE1 SINE B4 -4 161 2 5 698 473 371 28 6 chr12 14913312 14913488 -106344042 + B4A SINE B4 25 204 -88 5 698 234 214 0 0 chr12 14913570 14913659 -106343871 + (CA)n Simple_repeat Simple_repeat 1 89 0 5 698 318 156 0 0 chr12 14913677 14913741 -106343789 + A-rich Low_complexity Low_complexity 1 64 0 5 698 319 348 7 7 chr12 14914253 14914389 -106343141 + ID_B1 SINE B4 86 221 -3 5 698 236 378 43 11 chr12 14914673 14914860 -106342670 - MIRb SINE MIR -6 256 64 5 698 1939 112 3 0 chr12 14916105 14916391 -106341139 - Lx2 LINE L1 0 6997 6711 5 698 4991 190 42 16 chr12 14916977 14917761 -106339769 + Lx2B LINE L1 5875 6659 -341 5 698 477 0 0 0 chr12 14917761 14917814 -106339716 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 5 698 4991 190 42 16 chr12 14917814 14918120 -106339410 + Lx2B LINE L1 6660 6992 -8 5 698 22 56 0 0 chr12 14919297 14919333 -106338197 + AT_rich Low_complexity Low_complexity 1 36 0 5 698 3499 62 0 0 chr12 14919333 14919770 -106337760 + L1_Mus1 LINE L1 6129 6565 -2 5 698 30 113 0 0 chr12 14919779 14919921 -106337609 + AT_rich Low_complexity Low_complexity 1 142 0 5 698 289 379 8 17 chr12 14920442 14920560 -106336970 + RSINE1 SINE B4 12 128 -37 5 698 339 65 0 0 chr12 14920576 14920622 -106336908 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 698 21 57 0 0 chr12 14921545 14921580 -106335950 + AT_rich Low_complexity Low_complexity 1 35 0 5 698 388 288 12 39 chr12 14921657 14921827 -106335703 + Lx8 LINE L1 6297 6451 -1245 5 698 244 319 140 35 chr12 14921937 14921974 -106335556 + RMER17C LTR ERVK 63 100 -310 5 698 797 76 8 0 chr12 14921974 14922092 -106335438 + (TC)n Simple_repeat Simple_repeat 2 120 0 5 698 244 319 140 35 chr12 14922092 14922311 -106335219 + RMER17C LTR ERVK 101 345 -65 5 698 1457 331 102 18 chr12 14922404 14922914 -106334616 + Lx8 LINE L1 6553 7118 -355 5 698 1724 170 108 0 chr12 14922914 14923255 -106334275 - ORR1C1 LTR MaLR 0 378 1 5 698 1457 331 102 18 chr12 14923255 14923562 -106333968 + Lx8 LINE L1 7119 7438 -35 5 698 333 102 0 0 chr12 14923893 14923952 -106333578 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 6 698 26 30 0 0 chr12 14924668 14924701 -106332829 + AT_rich Low_complexity Low_complexity 1 33 0 6 698 270 0 0 0 chr12 14925097 14925127 -106332403 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 698 237 217 17 0 chr12 14925662 14925722 -106331808 - MLT1E2 LTR MaLR -3 624 564 6 698 644 173 8 0 chr12 14925894 14925915 -106331615 + polypyrimidine Low_complexity Low_complexity 116 136 0 6 698 1350 67 0 0 chr12 14925915 14926093 -106331437 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 6 698 644 173 8 0 chr12 14926093 14926204 -106331326 + CT-rich Low_complexity Low_complexity 4 115 0 6 698 1966 145 14 27 chr12 14926206 14926575 -106330955 - Lx LINE L1 0 6654 6291 6 698 2280 104 21 6 chr12 14926577 14926905 -106330625 + Lx LINE L1 5926 6258 -396 6 698 2035 161 11 27 chr12 14926907 14927518 -106330012 + L1_Mus4 LINE L1 5038 5421 -456 6 698 2757 98 0 0 chr12 14927541 14928017 -106329513 + Lx LINE L1 5450 5925 -729 6 698 204 40 0 0 chr12 14928066 14928091 -106329439 + (CCA)n Simple_repeat Simple_repeat 1 25 0 6 698 474 260 31 31 chr12 14928235 14928362 -106329168 - RSINE1 SINE B4 -36 129 3 6 698 320 41 0 39 chr12 14928732 14928783 -106328747 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 6 698 271 282 108 25 chr12 14929451 14929571 -106327959 + MER67C LTR ERV1 126 255 -456 6 698 205 205 0 0 chr12 14929749 14929788 -106327742 + T-rich Low_complexity Low_complexity 1 39 0 6 698 460 135 9 96 chr12 14931932 14932047 -106325483 - Lx4B LINE L1 0 7058 6954 6 698 1262 131 0 16 chr12 14932295 14932489 -106325041 + B2_Mm2 SINE B2 1 191 -4 6 698 530 173 16 2 chr12 14932711 14932810 -106324720 - B1_Mus1 SINE Alu -12 108 2 6 698 595 310 162 33 chr12 14933579 14933819 -106323711 + B4 SINE B4 2 272 -20 6 698 723 129 0 0 chr12 14933913 14934045 -106323485 + (GA)n Simple_repeat Simple_repeat 2 133 0 6 698 729 331 60 4 chr12 14936217 14936469 -106321061 + B4A SINE B4 27 292 0 6 698 241 288 0 0 chr12 14936473 14936539 -106320991 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 698 23 0 0 0 chr12 14937474 14937497 -106320033 + AT_rich Low_complexity Low_complexity 1 23 0 6 698 869 222 16 5 chr12 14937957 14938143 -106319387 - B3 SINE B2 -28 188 1 6 698 351 0 0 0 chr12 14938706 14938745 -106318785 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 698 974 136 0 0 chr12 14938904 14939058 -106318472 + B2_Mm1t SINE B2 40 193 0 6 698 249 218 0 35 chr12 14939070 14939081 -106318449 + A-rich Low_complexity Low_complexity 1 11 0 6 698 1251 34 0 0 chr12 14939081 14939228 -106318302 + B1_Mm SINE Alu 1 147 0 6 698 249 218 0 35 chr12 14939228 14939273 -106318257 + A-rich Low_complexity Low_complexity 12 55 0 6 698 23 0 0 0 chr12 14939424 14939447 -106318083 + AT_rich Low_complexity Low_complexity 1 23 0 6 698 6409 73 13 2 chr12 14939746 14941128 -106316402 - L1Md_F2 LINE L1 -119 6463 5059 6 698 780 203 0 20 chr12 14941334 14941485 -106316045 + B1_Mur3 SINE Alu 2 149 0 6 698 195 42 0 0 chr12 14941517 14941541 -106315989 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 698 180 77 0 0 chr12 14941984 14942010 -106315520 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 698 309 286 0 25 chr12 14942061 14942140 -106315390 - B4A SINE B4 -202 90 14 6 699 22 0 0 0 chr12 14942315 14942337 -106315193 + AT_rich Low_complexity Low_complexity 1 22 0 6 699 1913 158 29 21 chr12 14943013 14943387 -106314143 - L1_Mur2 LINE L1 -2249 3628 3252 6 699 1983 139 29 63 chr12 14943378 14943474 -106314056 + Lx4B LINE L1 4650 4745 -1132 6 699 5716 75 9 61 chr12 14943474 14944321 -106313209 + RLTR13B4 LTR ERVK 1 803 0 6 699 1983 195 23 111 chr12 14944321 14944967 -106312563 + Lx4B LINE L1 4746 5303 -580 6 699 37597 16 4 7 chr12 14944966 14950281 -106307249 + L1Md_A LINE L1 293 5586 -297 6 699 8650 16 5 0 chr12 14950281 14951272 -106306258 + L1Md_A LINE L1 5587 6582 0 6 699 24017 169 34 25 chr12 14951272 14952693 -106304837 + Lx4B LINE L1 5543 6760 -298 6 699 1248 112 21 5 chr12 14952729 14952917 -106304613 - Lx2 LINE L1 -412 6585 6395 6 699 213 279 0 0 chr12 14953123 14953166 -106304364 - ID4_ SINE ID -35 48 6 6 699 191 32 65 0 chr12 14954777 14954808 -106302722 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 699 275 364 25 25 chr12 14955169 14955290 -106302240 - ID_B1 SINE B4 -8 216 96 6 699 2611 141 12 0 chr12 14955323 14955741 -106301789 + Lx2 LINE L1 6574 6996 -1 6 699 445 304 69 22 chr12 14955946 14956274 -106301256 + L1MD2 LINE L1 2267 2603 -4030 6 699 2702 50 0 0 chr12 14956292 14956629 -106300901 - L1Md_F2 LINE L1 -12 6570 6234 6 699 868 243 19 24 chr12 14956701 14956912 -106300618 + B3 SINE B2 3 212 -4 6 699 251 320 112 4 chr12 14957086 14957337 -106300193 + L1MD2 LINE L1 3285 3562 -2975 6 699 409 301 88 9 chr12 14957407 14957635 -106299895 + L1MD2 LINE L1 6016 6261 -489 6 699 832 289 30 64 chr12 14957901 14958337 -106299193 + L1M2 LINE L1 4421 4841 -1302 6 699 222 240 0 0 chr12 14959634 14959684 -106297846 - B1_Mm SINE Alu -55 92 43 6 699 692 294 11 17 chr12 14959992 14960172 -106297358 + B3 SINE B2 28 206 -10 6 699 9932 15 0 0 chr12 14960479 14962307 -106295223 - L1Md_A LINE L1 0 6582 4755 6 699 304 306 45 36 chr12 14962439 14962551 -106294979 - B4A SINE B4 -6 286 174 6 699 275 309 71 0 chr12 14964220 14964304 -106293226 + PB1 SINE Alu 29 118 -9 6 699 37897 41 0 3 chr12 14964540 14970795 -106286735 - L1Md_T LINE L1 0 6585 250 6 699 520 295 98 0 chr12 14971006 14971199 -106286331 - Lx8 LINE L1 -460 7013 6802 6 699 422 322 82 0 chr12 14971208 14971354 -106286176 - MLT1A LTR MaLR -46 328 171 6 699 243 114 68 0 chr12 14971367 14971411 -106286119 + L1_Mus2 LINE L1 6494 6540 -26 6 699 238 329 13 40 chr12 14972531 14972607 -106284923 - ID4_ SINE ID -2 81 8 6 699 2298 136 17 0 chr12 14973626 14973980 -106283550 + L1_Mm LINE L1 5212 5571 -312 6 699 262 94 0 0 chr12 14973980 14974033 -106283497 + L1_Mus4 LINE L1 6584 6636 0 6 699 531 180 0 0 chr12 14974118 14974229 -106283301 + (TA)n Simple_repeat Simple_repeat 1 111 0 6 699 267 103 0 0 chr12 14974230 14974269 -106283261 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 699 240 119 0 0 chr12 14974455 14974497 -106283033 + Lx9 LINE L1 7601 7642 -2 6 699 471 35 0 0 chr12 14975730 14975787 -106281743 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 699 299 377 0 42 chr12 14976102 14976221 -106281309 - PB1D10 SINE Alu -1 116 3 6 699 294 318 59 0 chr12 14976304 14976389 -106281141 - B1F1 SINE Alu -57 92 3 6 699 335 228 10 107 chr12 14976623 14976726 -106280804 + RSINE1 SINE B4 65 157 -8 6 699 180 0 0 0 chr12 14976833 14976853 -106280677 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 699 630 356 59 12 chr12 14976853 14977101 -106280429 - B4 SINE B4 -27 265 5 6 699 428 356 18 5 chr12 14977144 14977364 -106280166 - L1MDa LINE L1 -4628 2005 1783 6 699 495 0 0 0 chr12 14977561 14977616 -106279914 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 699 1905 246 33 5 chr12 14977710 14978103 -106279427 + Lx5 LINE L1 6458 6861 -189 6 699 1064 108 0 0 chr12 14978103 14978251 -106279279 + B1_Mus1 SINE Alu 1 148 0 6 699 594 128 0 0 chr12 14978257 14978351 -106279179 + (GGA)n Simple_repeat Simple_repeat 3 96 0 6 699 472 248 33 60 chr12 14978363 14978513 -106279017 + Lx5 LINE L1 6902 7047 -3 6 699 327 345 17 8 chr12 14978652 14978769 -106278761 + RCHARR1 DNA MER1_type 12 129 -845 6 699 1494 71 14 5 chr12 14978772 14978985 -106278545 + L1_Mus3 LINE L1 6418 6632 -6 6 699 465 103 31 16 chr12 14979003 14979131 -106278399 + T-rich Low_complexity Low_complexity 1 130 0 6 699 1087 88 0 7 chr12 14979131 14979279 -106278251 - B1_Mus2 SINE Alu 0 147 1 6 699 362 311 77 55 chr12 14979333 14979643 -106277887 - L1MDa LINE L1 -5140 1493 1177 6 699 527 29 14 0 chr12 14979650 14979719 -106277811 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 699 297 246 15 0 chr12 14979740 14979805 -106277725 - RSINE1 SINE B4 -97 68 3 6 699 272 389 61 42 chr12 14980289 14980501 -106277029 - L1MDa LINE L1 -6060 573 358 6 699 35737 46 7 0 chr12 14980910 14982230 -106275300 - L1Md_F3 LINE L1 -14 6570 5244 6 699 495 0 0 0 chr12 14982230 14982285 -106275245 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 699 35737 73 14 9 chr12 14982285 14987128 -106270402 - L1Md_F3 LINE L1 -640 5243 377 6 699 24 53 0 0 chr12 14987158 14987196 -106270334 + AT_rich Low_complexity Low_complexity 1 38 0 6 699 336 56 0 0 chr12 14987448 14987502 -106270028 - L1_Mus4 LINE L1 -4 6632 6579 6 699 1484 294 68 10 chr12 14987502 14988003 -106269527 + Lx8 LINE L1 6938 7467 -6 6 699 471 335 71 0 chr12 14988709 14988891 -106268639 - ID_B1 SINE B4 -22 202 8 6 699 255 272 39 68 chr12 14989771 14989976 -106267554 + L1MD LINE L1 2681 2879 -3267 6 699 241 346 29 0 chr12 14990034 14990138 -106267392 + MLT1A0 LTR MaLR 42 148 -217 6 699 722 248 35 5 chr12 14990926 14991129 -106266401 + B3 SINE B2 2 210 -6 6 699 571 261 35 129 chr12 14991150 14991352 -106266178 + B3A SINE B2 4 186 -9 6 699 4961 95 3 4 chr12 14991376 14992083 -106265447 + L1_Mus4 LINE L1 5929 6634 -2 6 699 24 67 0 0 chr12 14992113 14992158 -106265372 + AT_rich Low_complexity Low_complexity 1 45 0 6 699 898 284 5 0 chr12 14992159 14992374 -106265156 - B3 SINE B2 0 216 1 6 699 24 0 0 0 chr12 14992867 14992891 -106264639 + AT_rich Low_complexity Low_complexity 1 24 0 6 699 841 299 81 27 chr12 14993188 14993521 -106264009 - Lx8 LINE L1 -690 6783 6433 6 699 1572 314 44 31 chr12 14993531 14994079 -106263451 + Lx8 LINE L1 6785 7339 -134 6 699 290 369 61 71 chr12 14994139 14994434 -106263096 + MLT1A0 LTR MaLR 34 325 -40 6 699 189 94 0 0 chr12 14994876 14994908 -106262622 + (T)n Simple_repeat Simple_repeat 1 32 0 6 699 648 159 57 38 chr12 14995342 14995371 -106262159 - L1MD LINE L1 -632 5610 5579 6 699 2105 88 3 13 chr12 14995371 14995669 -106261861 - L1Md_F2 LINE L1 -16 6566 6272 6 699 1170 37 0 0 chr12 14995669 14995804 -106261726 - L1_Mm LINE L1 -335 5548 5414 7 699 387 41 0 0 chr12 14996119 14996168 -106261362 + (TATG)n Simple_repeat Simple_repeat 2 50 0 7 699 22 56 0 0 chr12 14996211 14996247 -106261283 + AT_rich Low_complexity Low_complexity 1 36 0 7 699 21 57 0 0 chr12 14996643 14996678 -106260852 + AT_rich Low_complexity Low_complexity 1 35 0 7 699 232 308 0 110 chr12 14996678 14996751 -106260779 - ID SINE ID -149 75 11 7 699 228 237 13 26 chr12 14996870 14996948 -106260582 + (TTTA)n Simple_repeat Simple_repeat 4 80 0 7 699 401 316 0 0 chr12 14996983 14997078 -106260452 - RSINE1 SINE B4 -34 131 37 7 699 694 149 0 17 chr12 14997085 14997201 -106260329 + Lx LINE L1 4825 4938 -945 7 699 4560 64 2 3 chr12 14997221 14997805 -106259725 - L1_Mus1 LINE L1 -1 6566 5984 7 699 2888 71 3 0 chr12 14997805 14998187 -106259343 + L1_Mus1 LINE L1 5592 5974 -593 7 699 6927 137 11 9 chr12 14998169 14999901 -106257629 + Lx LINE L1 4913 6647 -7 7 699 231 182 13 25 chr12 14999904 14999983 -106257547 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 7 699 426 320 15 52 chr12 15000017 15000152 -106257378 - RSINE1 SINE B4 -34 131 2 1 699 508 325 115 28 chr12 15000422 15000675 -106256855 + MER89 LTR ERV1 285 559 0 2 699 238 293 0 51 chr12 15000791 15000870 -106256660 - PB1D10 SINE Alu -18 99 25 3 699 21 0 0 0 chr12 15001215 15001236 -106256294 + AT_rich Low_complexity Low_complexity 1 21 0 4 699 818 266 152 9 chr12 15001715 15002037 -106255493 + ORR1D2 LTR MaLR 3 370 0 5 699 1304 63 0 6 chr12 15002782 15002958 -106254572 + (TCC)n Simple_repeat Simple_repeat 3 177 0 6 699 793 117 200 0 chr12 15003616 15003761 -106253769 + URR1A DNA MER1_type 53 226 0 7 699 309 242 222 31 chr12 15003761 15003773 -106253757 - CYRA11_Mm Unknown Y-chromosome -265 347 160 8 699 736 285 71 15 chr12 15003942 15004138 -106253392 - B3 SINE B2 -4 212 6 9 699 252 86 0 0 chr12 15004452 15004487 -106253043 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1 699 980 287 49 4 chr12 15004503 15004769 -106252761 + MER67C LTR ERV1 116 393 -318 1 699 567 130 8 16 chr12 15005162 15005287 -106252243 + CT-rich Low_complexity Low_complexity 1 124 0 1 699 3315 35 5 0 chr12 15005892 15006286 -106251244 - MTA_Mm LTR MaLR 0 396 1 1 699 303 274 0 0 chr12 15006309 15006382 -106251148 + B4 SINE B4 97 169 -123 1 699 369 289 24 95 chr12 15006952 15007078 -106250452 + B4 SINE B4 167 283 -9 1 699 2386 95 166 16 chr12 15007738 15008035 -106249495 - Lx3_Mus LINE L1 -649 6360 6051 1 699 303 28 0 0 chr12 15008035 15008071 -106249459 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 1 699 2386 95 166 16 chr12 15008071 15008202 -106249328 - Lx3_Mus LINE L1 -959 6050 5870 1 699 601 200 399 27 chr12 15008203 15008496 -106249034 + RLTR9D LTR ERVK 1 402 -1 1 699 681 254 60 63 chr12 15008502 15008821 -106248709 + ETnERV-int LTR ERVK 3 320 -2994 1 699 2100 79 7 14 chr12 15008830 15009126 -106248404 + ETnERV2-int LTR ERVK 1780 2073 -5333 1 699 1135 68 0 20 chr12 15009129 15009278 -106248252 + B1_Mm SINE Alu 2 147 0 1 699 180 0 0 0 chr12 15009281 15009301 -106248229 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 699 9469 164 30 30 chr12 15009350 15012235 -106245295 + ETnERV2-int LTR ERVK 1565 6227 -1179 1 699 424 111 27 14 chr12 15012449 15012522 -106245008 + ETnERV2-int LTR ERVK 7331 7404 -2 1 699 1842 171 72 3 chr12 15012523 15012911 -106244619 + RLTR9F LTR ERVK 1 415 0 1 699 1865 113 9 54 chr12 15012911 15013228 -106244302 - L1_Mur1 LINE L1 -11 5875 5573 2 699 1148 92 0 13 chr12 15013227 15013382 -106244148 + Lx3_Mus LINE L1 6365 6517 -492 2 699 435 231 51 51 chr12 15013413 15013550 -106243980 + MLT1B LTR MaLR 242 378 -12 2 699 27 81 0 0 chr12 15013852 15013914 -106243616 + AT_rich Low_complexity Low_complexity 1 62 0 2 699 577 296 28 0 chr12 15014623 15014802 -106242728 - B3A SINE B2 -14 184 1 2 699 1417 223 58 18 chr12 15015512 15015855 -106241675 - MTC LTR MaLR -64 357 1 2 699 375 23 0 0 chr12 15016409 15016453 -106241077 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 699 360 0 0 0 chr12 15016453 15016492 -106241038 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 699 21 71 0 0 chr12 15016623 15016665 -106240865 + AT_rich Low_complexity Low_complexity 1 42 0 2 699 479 327 58 58 chr12 15017860 15018240 -106239290 - ERVL-int LTR ERVL -320 5437 5058 3 699 403 229 179 41 chr12 15018450 15018646 -106238884 - ERVL-B4-int LTR ERVL -4652 1062 840 3 699 531 311 41 5 chr12 15018669 15018866 -106238664 - MLT2D LTR ERVL -169 245 42 3 699 29 60 0 0 chr12 15019362 15019412 -106238118 + AT_rich Low_complexity Low_complexity 1 50 0 3 699 323 170 30 10 chr12 15019711 15019812 -106237718 + (TA)n Simple_repeat Simple_repeat 1 103 0 3 699 417 116 0 0 chr12 15021551 15021620 -106235910 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 699 1010 260 114 23 chr12 15021706 15022049 -106235481 - ORR1D1 LTR MaLR 0 374 1 3 699 32 0 0 0 chr12 15022587 15022619 -106234911 + AT_rich Low_complexity Low_complexity 1 32 0 3 699 3557 0 2 0 chr12 15022619 15023017 -106234513 - L1Md_T LINE L1 0 6582 6184 3 699 571 133 0 32 chr12 15023638 15023762 -106233768 - L1Md_F2 LINE L1 -2 6580 6461 3 699 2830 67 0 8 chr12 15023763 15024123 -106233407 + L1Md_F2 LINE L1 6084 6440 -142 3 699 802 236 33 24 chr12 15024848 15025061 -106232469 + B3 SINE B2 1 215 -1 4 699 2003 148 13 40 chr12 15025192 15025572 -106231958 + Lx LINE L1 6285 6654 0 4 699 213 195 0 0 chr12 15025711 15025752 -106231778 + CT-rich Low_complexity Low_complexity 2 42 0 4 699 373 360 39 84 chr12 15026840 15027019 -106230511 + B3A SINE B2 1 171 -27 4 699 21 71 0 0 chr12 15027037 15027079 -106230451 + AT_rich Low_complexity Low_complexity 1 42 0 4 699 412 94 9 4 chr12 15027079 15027157 -106230373 + Lx2B LINE L1 6623 6675 -325 4 699 457 288 53 18 chr12 15027157 15027270 -106230260 + ETnERV2-int LTR ERVK 7086 7202 -204 4 699 1765 188 6 3 chr12 15027663 15027988 -106229542 + Lx2 LINE L1 6671 6996 -1 4 699 450 312 153 23 chr12 15028156 15028599 -106228931 - L1MCa LINE L1 -5141 1367 867 4 699 700 283 75 57 chr12 15028628 15028898 -106228632 + ORR1D2 LTR MaLR 3 273 -97 4 699 1166 75 0 0 chr12 15028898 15029045 -106228485 + B1_Mus1 SINE Alu 2 148 0 5 699 563 318 67 76 chr12 15029045 15029104 -106228426 + ORR1D2 LTR MaLR 273 329 -45 4 699 1946 298 100 28 chr12 15029818 15030665 -106226865 - Lx8 LINE L1 0 7473 6566 5 699 506 272 73 0 chr12 15031496 15031632 -106225898 + B3 SINE B2 3 148 -68 5 699 467 94 31 10 chr12 15031632 15031729 -106225801 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 699 36262 53 12 4 chr12 15032765 15038274 -106219256 + L1Md_T LINE L1 99 5586 -297 5 699 8006 55 0 0 chr12 15038274 15039270 -106218260 + L1Md_T LINE L1 5587 6582 0 5 699 263 183 0 12 chr12 15039421 15039504 -106218026 + A-rich Low_complexity Low_complexity 2 83 0 5 699 663 387 11 11 chr12 15039795 15040067 -106217463 + B4A SINE B4 14 285 -7 5 699 204 246 0 0 chr12 15040107 15040176 -106217354 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 699 1436 312 105 3 chr12 15041084 15041310 -106216220 + Lx7 LINE L1 6723 6993 -703 5 699 546 16 0 0 chr12 15041310 15041373 -106216157 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 699 1436 312 105 3 chr12 15041373 15041719 -106215811 + Lx7 LINE L1 6994 7352 -344 5 699 369 0 0 0 chr12 15041735 15041776 -106215754 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 699 23 54 0 0 chr12 15041812 15041849 -106215681 + AT_rich Low_complexity Low_complexity 1 37 0 6 699 3399 67 2 2 chr12 15041907 15042344 -106215186 - L1_Mus2 LINE L1 -1 6565 6129 6 699 4619 95 1 2 chr12 15042706 15043520 -106214010 + Lx3A LINE L1 5253 6059 -922 6 699 753 172 33 0 chr12 15043521 15043643 -106213887 + ETnERV2-int LTR ERVK 7070 7195 -211 6 699 5047 138 53 28 chr12 15044026 15044933 -106212597 + Lx3A LINE L1 6045 6974 -7 6 699 26 30 0 0 chr12 15044934 15044967 -106212563 + AT_rich Low_complexity Low_complexity 1 33 0 6 699 426 88 0 17 chr12 15045350 15045408 -106212122 - Lx3A LINE L1 -201 6780 6724 6 699 710 222 95 5 chr12 15046392 15046582 -106210948 - Lx5 LINE L1 -9 7041 6835 6 699 739 231 125 11 chr12 15047227 15047411 -106210119 + B3 SINE B2 12 216 0 6 699 21 0 0 0 chr12 15047430 15047451 -106210079 + AT_rich Low_complexity Low_complexity 1 21 0 6 699 1057 76 0 0 chr12 15047760 15047943 -106209587 + L1_Mus2 LINE L1 6422 6566 0 7 699 755 75 0 9 chr12 15048057 15048165 -106209365 + (GAAAA)n Simple_repeat Simple_repeat 4 110 0 7 699 294 325 45 19 chr12 15048909 15049063 -106208467 + L2a LINE L2 3266 3423 -3 7 699 188 370 14 0 chr12 15049216 15049289 -106208241 + MIRb SINE MIR 2 75 -193 7 699 1067 262 151 61 chr12 15049401 15049978 -106207552 + Lx8 LINE L1 6772 7400 -73 7 699 311 320 45 101 chr12 15050052 15050250 -106207280 + B3A SINE B2 1 187 -11 7 699 6547 150 16 0 chr12 15050770 15051858 -106205672 - Lx2 LINE L1 -349 5534 4430 7 699 8837 138 22 3 chr12 15051857 15053298 -106204232 + Lx2 LINE L1 5529 6997 0 7 699 706 271 20 59 chr12 15053398 15053560 -106203970 + ID_B1 SINE B4 22 184 -40 7 699 1229 148 71 9 chr12 15053560 15053772 -106203758 - URR1B DNA MER1_type 0 225 1 7 699 706 271 20 59 chr12 15053772 15053813 -106203717 + ID_B1 SINE B4 185 217 -7 7 699 326 320 92 33 chr12 15054897 15055049 -106202481 + RSINE1 SINE B4 5 165 0 7 699 693 103 0 0 chr12 15055049 15055166 -106202364 + (GA)n Simple_repeat Simple_repeat 1 117 0 8 699 192 40 0 0 chr12 15056044 15056069 -106201461 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 699 24 0 0 0 chr12 15056078 15056102 -106201428 + AT_rich Low_complexity Low_complexity 1 24 0 8 699 232 284 13 13 chr12 15056293 15056368 -106201162 + GA-rich Low_complexity Low_complexity 3 77 0 8 699 293 0 27 0 chr12 15056444 15056481 -106201049 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 8 699 1095 72 0 0 chr12 15056481 15056619 -106200911 - B1_Mm SINE Alu -9 138 1 8 699 546 16 0 0 chr12 15056728 15056791 -106200739 + (TA)n Simple_repeat Simple_repeat 2 64 0 8 699 297 211 49 62 chr12 15056791 15056872 -106200658 + Lx9 LINE L1 7339 7418 -226 8 699 483 304 39 59 chr12 15056971 15057188 -106200342 - MTD LTR MaLR -225 194 2 8 699 305 302 269 22 chr12 15057190 15057417 -106200113 - MTD-int LTR MaLR 0 1580 1298 8 699 1031 51 0 7 chr12 15057484 15057623 -106199907 + (GGA)n Simple_repeat Simple_repeat 2 139 0 8 699 21 0 0 0 chr12 15058903 15058924 -106198606 + AT_rich Low_complexity Low_complexity 1 21 0 9 699 1198 362 84 41 chr12 15059572 15060134 -106197396 - MTD-int LTR MaLR -236 1344 759 8 699 1005 346 13 34 chr12 15060236 15060622 -106196908 - MTD-int LTR MaLR -1200 380 3 8 699 602 259 80 35 chr12 15060932 15061132 -106196398 - B3 SINE B2 -6 210 2 9 699 212 0 36 0 chr12 15061575 15061603 -106195927 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 699 37709 41 3 3 chr12 15061929 15068178 -106189352 - L1Md_T LINE L1 0 6585 240 9 699 375 344 49 55 chr12 15068980 15069143 -106188387 - RSINE1 SINE B4 0 165 4 9 699 3164 48 10 13 chr12 15069718 15070115 -106187415 - MTA_Mm LTR MaLR 0 396 1 9 699 234 0 0 0 chr12 15070235 15070261 -106187269 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 9 699 21 0 0 31 chr12 15070474 15070491 -106187039 + AT_rich Low_complexity Low_complexity 1 17 0 9 699 1117 88 0 0 chr12 15070491 15070638 -106186892 + B1_Mm SINE Alu 1 147 0 9 699 21 0 0 31 chr12 15070638 15070652 -106186878 + AT_rich Low_complexity Low_complexity 1 14 0 9 699 367 257 208 22 chr12 15070697 15070880 -106186650 + URR1B DNA MER1_type 2 218 -7 1 699 1909 223 94 2 chr12 15072132 15072599 -106184931 - Lx9 LINE L1 -299 7345 6836 1 699 832 193 0 29 chr12 15072751 15072922 -106184608 - RMER1C Other Other -116 1226 1061 1 699 23 0 0 0 chr12 15072998 15073021 -106184509 + AT_rich Low_complexity Low_complexity 1 23 0 1 87 233 267 13 13 chr12 15073208 15073284 -106184246 - L1MC1 LINE L1 -256 6077 6002 1 700 559 222 82 15 chr12 15073282 15073451 -106184079 - L1MC1 LINE L1 -507 5672 5495 1 700 355 308 9 9 chr12 15073475 15073580 -106183950 + ORR1D2 LTR MaLR 1 105 -265 1 700 187 329 160 46 chr12 15073986 15074161 -106183369 + MIR SINE MIR 49 243 -19 1 700 336 297 4 16 chr12 15074864 15074982 -106182548 + ID2 SINE ID 17 131 -21 1 700 195 42 0 0 chr12 15075239 15075263 -106182267 + (TTTTC)n Simple_repeat Simple_repeat 5 28 0 1 700 2628 155 29 9 chr12 15075799 15076236 -106181294 + Lx2 LINE L1 6422 6867 -130 1 700 180 0 0 0 chr12 15076236 15076256 -106181274 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 1 700 263 278 28 0 chr12 15076330 15076402 -106181128 - RLTR26 LTR ERVK -568 74 1 1 700 1503 210 73 49 chr12 15076402 15076947 -106180583 - BGLII_B LTR ERVK -114 439 4 1 700 379 229 0 9 chr12 15076948 15077025 -106180505 + Lx2 LINE L1 6893 6969 -28 1 700 339 25 0 0 chr12 15077025 15077065 -106180465 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 1 700 379 229 0 9 chr12 15077065 15077093 -106180437 + Lx2 LINE L1 6970 6997 0 1 700 257 236 27 36 chr12 15077094 15077204 -106180326 + A-rich Low_complexity Low_complexity 2 110 0 1 700 519 17 0 0 chr12 15077869 15077929 -106179601 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 700 372 22 0 0 chr12 15077929 15077973 -106179557 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 700 297 292 107 39 chr12 15078025 15078203 -106179327 + B3A SINE B2 3 192 -6 1 700 224 71 0 0 chr12 15078496 15078524 -106179006 + (TCC)n Simple_repeat Simple_repeat 3 30 0 1 700 261 163 0 0 chr12 15078524 15078573 -106178957 + CT-rich Low_complexity Low_complexity 2 50 0 1 700 314 258 155 57 chr12 15078729 15078922 -106178608 - L1MDa LINE L1 -5139 1494 1283 1 700 464 321 14 0 chr12 15079061 15079201 -106178329 - B3A SINE B2 -56 142 1 1 700 387 0 0 0 chr12 15079359 15079402 -106178128 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 700 3276 152 17 0 chr12 15079412 15079937 -106177593 + Lx4A LINE L1 6524 7057 -1 1 700 22 0 0 0 chr12 15079937 15079959 -106177571 + AT_rich Low_complexity Low_complexity 1 22 0 1 700 1583 252 112 39 chr12 15080254 15080330 -106177200 - RLTR20D LTR ERVK 0 568 463 1 700 300 27 0 0 chr12 15080330 15080367 -106177163 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 700 1583 257 107 41 chr12 15080367 15080803 -106176727 - RLTR20D LTR ERVK -106 462 51 1 700 207 0 0 0 chr12 15082102 15082125 -106175405 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 700 451 51 0 0 chr12 15082147 15082206 -106175324 - B1_Mus2 SINE Alu -1 146 88 1 700 275 271 82 0 chr12 15082325 15082410 -106175120 + B1F SINE Alu 43 134 -15 1 700 264 323 10 70 chr12 15082331 15082431 -106175099 + ID_B1 SINE B4 130 223 -1 1 700 546 311 93 6 chr12 15082512 15082674 -106174856 + B3A SINE B2 1 176 -22 1 700 309 51 0 0 chr12 15082770 15082809 -106174721 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1 700 289 312 130 29 chr12 15083050 15083288 -106174242 - L1MC2 LINE L1 -348 5996 5735 1 700 350 159 14 0 chr12 15083366 15083435 -106174095 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 700 775 321 20 68 chr12 15083576 15083870 -106173660 - B4A SINE B4 -6 286 7 1 700 516 32 0 0 chr12 15084266 15084328 -106173202 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 700 469 72 72 0 chr12 15084329 15084412 -106173118 + (TTTTC)n Simple_repeat Simple_repeat 1 89 0 1 700 504 335 6 0 chr12 15085508 15085687 -106171843 + B3A SINE B2 1 180 -18 1 700 1504 114 84 0 chr12 15085712 15085949 -106171581 - Lx2 LINE L1 -412 6585 6329 1 700 1695 123 0 7 chr12 15085953 15086223 -106171307 + Lx2 LINE L1 6730 6997 0 1 700 243 0 0 0 chr12 15088073 15088100 -106169430 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 700 414 0 0 0 chr12 15088100 15088145 -106169385 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 700 293 294 34 89 chr12 15088492 15088671 -106168859 + L1MCa LINE L1 13 156 -5889 1 700 258 286 74 42 chr12 15089004 15089099 -106168431 + L1MCa LINE L1 629 726 -5319 1 700 561 324 115 62 chr12 15089325 15090030 -106167500 + L1MCa LINE L1 1082 1823 -4928 1 700 2562 47 158 0 chr12 15090578 15090920 -106166610 - MTA_Mm LTR MaLR 0 396 1 1 700 8479 65 7 1 chr12 15090920 15092011 -106165519 - MTA_Mm-int LTR MaLR 0 1098 1 1 700 3200 63 2 0 chr12 15092011 15092406 -106165124 - MTA_Mm LTR MaLR 0 396 1 1 700 235 391 40 40 chr12 15092985 15093358 -106164172 - Lx8 LINE L1 -9 7464 7092 1 700 840 263 50 0 chr12 15094227 15094425 -106163105 - B3 SINE B2 -6 210 3 1 700 2198 90 16 9 chr12 15094501 15094816 -106162714 - L1_Mus3 LINE L1 0 6638 6322 1 700 1159 55 7 0 chr12 15094862 15095008 -106162522 - B1_Mm SINE Alu 0 147 1 1 700 248 345 73 33 chr12 15095009 15095159 -106162371 + MER57C2 LTR ERV1 105 260 -174 1 700 416 35 17 0 chr12 15095395 15095453 -106162077 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 700 456 298 30 8 chr12 15095751 15095883 -106161647 + MER57C2 LTR ERV1 275 409 -25 1 700 180 0 0 0 chr12 15095885 15095905 -106161625 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 700 557 180 63 70 chr12 15096404 15096547 -106160983 - MTE2b LTR MaLR 0 379 238 1 700 907 114 0 0 chr12 15097080 15097211 -106160319 + B1_Mus1 SINE Alu 10 140 -8 1 700 180 0 0 0 chr12 15097221 15097241 -106160289 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 700 652 296 73 57 chr12 15097396 15097643 -106159887 - MTE2b LTR MaLR -109 270 20 1 700 594 231 378 29 chr12 15097723 15097997 -106159533 + ORR1D2 LTR MaLR 1 370 0 1 700 239 171 0 28 chr12 15098029 15098101 -106159429 + (TCTCTG)n Simple_repeat Simple_repeat 2 71 0 1 700 225 254 0 31 chr12 15099695 15099760 -106157770 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 1 700 483 48 0 0 chr12 15099769 15099831 -106157699 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 700 312 296 10 10 chr12 15099917 15100016 -106157514 - MLT2D LTR ERVL -227 187 89 1 700 299 352 43 11 chr12 15100536 15100628 -106156902 + B1F SINE Alu 6 100 -49 1 700 21 0 0 0 chr12 15100712 15100733 -106156797 + AT_rich Low_complexity Low_complexity 1 21 0 1 700 8562 63 5 2 chr12 15101051 15102822 -106154708 - L1Md_F2 LINE L1 -12 6570 4792 1 700 1049 77 0 27 chr12 15104021 15104168 -106153362 + L1Md_F2 LINE L1 5881 6023 -559 1 700 1090 207 9 14 chr12 15104218 15104438 -106153092 - URR1B DNA MER1_type 0 225 7 1 700 1996 173 77 12 chr12 15104911 15105315 -106152215 + Lx LINE L1 6225 6654 0 1 700 216 143 20 20 chr12 15106134 15106184 -106151346 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 700 289 261 205 30 chr12 15106318 15106484 -106151046 - Lx8 LINE L1 -2 7471 7277 1 700 211 184 0 0 chr12 15106644 15106682 -106150848 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 700 340 209 223 18 chr12 15106707 15106819 -106150711 + Lx9 LINE L1 7127 7261 -383 1 700 356 40 0 20 chr12 15106820 15106871 -106150659 + (TTTAA)n Simple_repeat Simple_repeat 1 50 0 1 700 307 321 0 12 chr12 15106873 15106958 -106150572 - B4A SINE B4 -86 206 123 1 700 230 106 143 41 chr12 15107296 15107345 -106150185 - MIR SINE MIR -89 173 120 1 700 211 289 128 43 chr12 15107797 15107938 -106149592 - L2b LINE L2 -10 3416 3264 1 700 335 326 75 55 chr12 15108067 15108213 -106149317 + B4 SINE B4 1 149 -143 1 700 299 45 0 22 chr12 15108380 15108426 -106149104 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 700 192 97 0 0 chr12 15109460 15109491 -106148039 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 700 210 245 20 0 chr12 15112042 15112091 -106145439 + CT-rich Low_complexity Low_complexity 1 50 0 1 700 203 0 37 0 chr12 15113111 15113138 -106144392 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 700 1195 54 0 0 chr12 15113154 15113301 -106144229 - B1_Mus2 SINE Alu 0 147 1 1 700 296 297 81 21 chr12 15113859 15114111 -106143419 - L1MB7 LINE L1 -53 6118 5861 1 700 342 287 135 30 chr12 15114168 15114434 -106143096 - L1MB7 LINE L1 -1590 4556 4263 1 700 260 0 0 54 chr12 15114453 15114490 -106143040 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 1 700 252 0 0 0 chr12 15114642 15114670 -106142860 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 700 941 93 0 60 chr12 15114674 15114823 -106142707 - B1_Mus1 SINE Alu -7 141 2 1 700 1429 224 8 70 chr12 15115028 15115426 -106142104 - ORR1D1 LTR MaLR 0 374 2 1 700 659 323 88 67 chr12 15116295 15117177 -106140353 - BLACKJACK DNA AcHobo -370 2574 1674 1 700 276 384 116 26 chr12 15117470 15117660 -106139870 - B4A SINE B4 -84 208 2 1 700 4943 187 46 72 chr12 15117733 15118039 -106139491 - RLTR25A LTR ERVK 0 1103 795 1 700 1883 115 277 7 chr12 15118039 15118458 -106139072 + RLTR47_MM LTR ERV1 1 532 0 1 700 4943 187 46 72 chr12 15118458 15118565 -106138965 - RLTR25A LTR ERVK -309 794 679 1 700 306 0 0 0 chr12 15118565 15118599 -106138931 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 700 4943 187 46 72 chr12 15118599 15119017 -106138513 - RLTR25A LTR ERVK -425 678 264 1 700 1009 95 7 0 chr12 15119017 15119164 -106138366 + B1_Mus1 SINE Alu 1 148 0 1 700 4943 187 46 72 chr12 15119164 15119462 -106138068 - RLTR25A LTR ERVK -840 263 1 1 700 522 0 0 0 chr12 15119480 15119538 -106137992 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 700 837 258 30 69 chr12 15120000 15120334 -106137196 + MTC LTR MaLR 1 321 -58 1 700 260 346 83 55 chr12 15120467 15120516 -106137014 - BLACKJACK DNA AcHobo -2278 666 615 1 700 1518 191 59 70 chr12 15120516 15120738 -106136792 - ORR1C2 LTR MaLR 0 384 164 1 700 700 257 0 0 chr12 15120738 15120882 -106136648 - B1_Mur3 SINE Alu -5 144 1 1 700 1518 191 59 70 chr12 15120882 15121047 -106136483 - ORR1C2 LTR MaLR -221 163 1 1 700 260 346 83 55 chr12 15121047 15121214 -106136316 - BLACKJACK DNA AcHobo -2330 614 444 1 700 2196 119 154 20 chr12 15121523 15121919 -106135611 - RLTR44B LTR ERVK 0 449 1 1 700 1546 174 147 88 chr12 15122449 15122870 -106134660 + RLTR41 LTR ERV1 1 446 0 1 700 438 108 0 0 chr12 15122934 15122999 -106134531 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 1 700 2562 60 46 9 chr12 15123295 15123645 -106133885 - L1Md_F2 LINE L1 -2 6580 6218 1 700 21 57 0 0 chr12 15123836 15123871 -106133659 + AT_rich Low_complexity Low_complexity 1 35 0 1 700 7002 72 75 6 chr12 15123871 15124880 -106132650 - L1_Mus3 LINE L1 -12 6626 5570 1 700 1165 56 0 0 chr12 15124880 15125024 -106132506 - B1_Mus2 SINE Alu 0 147 4 2 700 4557 129 22 78 chr12 15125024 15125564 -106131966 - L1_Mus3 LINE L1 -314 5569 5067 1 700 246 116 0 0 chr12 15126574 15126617 -106130913 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 700 423 271 51 43 chr12 15126731 15126966 -106130564 + L1MA6 LINE L1 6058 6294 -6 2 700 209 326 0 23 chr12 15127114 15127202 -106130328 + CT-rich Low_complexity Low_complexity 3 88 0 2 700 26 30 0 0 chr12 15128585 15128618 -106128912 + AT_rich Low_complexity Low_complexity 1 33 0 2 700 293 306 214 0 chr12 15128672 15128770 -106128760 - B3A SINE B2 -78 120 2 2 700 243 0 0 0 chr12 15128771 15128798 -106128732 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 700 423 365 12 0 chr12 15129371 15129541 -106127989 - MER2 DNA MER2_type -8 337 166 2 700 1110 237 92 26 chr12 15129548 15129900 -106127630 - Lx8 LINE L1 -1558 5915 5541 2 700 235 246 0 16 chr12 15129902 15129964 -106127566 - MER2 DNA MER2_type -170 175 115 2 700 213 304 24 71 chr12 15130268 15130353 -106127177 + MIRb SINE MIR 1 81 -187 2 700 1303 214 166 3 chr12 15130419 15130756 -106126774 - Lx2B LINE L1 -3 6997 6606 2 700 654 13 0 0 chr12 15130975 15131050 -106126480 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 700 230 167 17 0 chr12 15132805 15132865 -106124665 + CT-rich Low_complexity Low_complexity 2 62 0 2 700 409 33 0 76 chr12 15133030 15133096 -106124434 - L1Md_F2 LINE L1 -11 6571 6511 2 700 414 270 70 0 chr12 15133495 15133595 -106123935 + ORR1E LTR MaLR 1 107 -252 2 700 317 281 3 0 chr12 15133602 15133723 -106123807 - Lx7 LINE L1 -502 5798 5641 2 700 798 70 0 45 chr12 15133777 15133911 -106123619 + (TATG)n Simple_repeat Simple_repeat 4 131 0 2 700 205 232 18 18 chr12 15133912 15133969 -106123561 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 2 700 25 0 0 0 chr12 15134403 15134428 -106123102 + AT_rich Low_complexity Low_complexity 1 25 0 2 700 321 184 0 0 chr12 15134428 15134537 -106122993 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 700 2344 104 0 17 chr12 15135719 15136072 -106121458 - L1Md_F2 LINE L1 -12 6570 6224 2 700 358 283 71 0 chr12 15136241 15136340 -106121190 + RSINE1 SINE B4 25 130 -35 2 700 281 316 78 9 chr12 15136431 15136546 -106120984 - B4A SINE B4 -168 124 2 2 700 436 321 51 29 chr12 15136582 15136720 -106120810 - ID_B1 SINE B4 -3 221 81 2 700 522 46 0 0 chr12 15136842 15136907 -106120623 + (GGGA)n Simple_repeat Simple_repeat 4 68 0 2 700 192 200 0 0 chr12 15136908 15136953 -106120577 + GA-rich Low_complexity Low_complexity 2 46 0 2 700 471 118 0 0 chr12 15136964 15137040 -106120490 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 2 700 25 0 0 0 chr12 15137710 15137735 -106119795 + AT_rich Low_complexity Low_complexity 1 25 0 2 700 1276 325 53 49 chr12 15138484 15138722 -106118808 + L1MA6 LINE L1 4614 4854 -1026 2 700 207 0 0 0 chr12 15138722 15138745 -106118785 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 700 1276 325 53 49 chr12 15138745 15138791 -106118739 + L1MA6 LINE L1 4855 4898 -982 2 700 3832 59 4 6 chr12 15138791 15139287 -106118243 + L1_Mus2 LINE L1 6072 6566 0 2 700 1276 325 53 49 chr12 15139287 15139414 -106118116 + L1MA6 LINE L1 4899 5011 -869 2 700 216 0 0 0 chr12 15139414 15139438 -106118092 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 700 1276 312 57 43 chr12 15139438 15140307 -106117223 + L1MA6 LINE L1 5012 5937 -363 2 700 31 0 0 0 chr12 15140648 15140679 -106116851 + AT_rich Low_complexity Low_complexity 1 31 0 2 700 3395 78 100 32 chr12 15142308 15142836 -106114694 + LTRIS2 LTR ERV1 1 564 0 2 700 295 357 38 38 chr12 15142910 15143070 -106114460 + RSINE1 SINE B4 4 163 -2 2 700 270 312 0 0 chr12 15143308 15143385 -106114145 + C-rich Low_complexity Low_complexity 2 78 0 2 700 1114 170 143 62 chr12 15144729 15145036 -106112494 - IAPEY3_LTR LTR ERVK 0 332 1 2 700 290 123 0 30 chr12 15145265 15145332 -106112198 + (CAGAGA)n Simple_repeat Simple_repeat 4 68 0 2 700 995 304 37 31 chr12 15146605 15146958 -106110572 + MTEa LTR MaLR 13 367 -12 2 700 234 0 0 0 chr12 15147029 15147055 -106110475 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 700 704 192 134 53 chr12 15147335 15147522 -106110008 - MTD LTR MaLR 0 419 218 2 700 271 196 0 0 chr12 15147521 15147567 -106109963 - MTD LTR MaLR -363 58 13 2 700 917 191 6 6 chr12 15147567 15147886 -106109644 + GA-rich Low_complexity Low_complexity 1 319 0 2 700 399 138 0 0 chr12 15147886 15147944 -106109586 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2 700 21 0 0 0 chr12 15148677 15148698 -106108832 + AT_rich Low_complexity Low_complexity 1 21 0 2 700 582 62 0 30 chr12 15149153 15149252 -106108278 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 700 255 61 0 0 chr12 15149350 15149383 -106108147 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 700 47 78 0 0 chr12 15149636 15149739 -106107791 + AT_rich Low_complexity Low_complexity 1 103 0 2 700 1162 62 7 0 chr12 15149747 15149893 -106107637 - B1_Mm SINE Alu 0 147 1 2 700 23 0 0 0 chr12 15149952 15149975 -106107555 + AT_rich Low_complexity Low_complexity 1 23 0 2 700 1284 74 6 11 chr12 15149987 15150164 -106107366 + B2_Mm2 SINE B2 1 176 -19 2 700 1031 107 60 71 chr12 15150201 15150383 -106107147 + B2_Mm2 SINE B2 2 181 -14 2 700 283 314 11 55 chr12 15150646 15150737 -106106793 - RSINE1 SINE B4 0 165 79 2 700 312 315 131 0 chr12 15152330 15152451 -106105079 + B1F1 SINE Alu 3 140 -9 2 700 431 314 73 52 chr12 15152491 15152777 -106104753 + B4A SINE B4 1 292 0 2 700 361 322 74 0 chr12 15153008 15153129 -106104401 - B1F SINE Alu -1 148 19 2 700 446 333 72 0 chr12 15153437 15153617 -106103913 + ID_B1 SINE B4 1 193 -31 2 700 369 303 179 40 chr12 15153755 15154006 -106103524 + RMER15 LTR ERVL 275 560 -15 2 700 211 224 20 0 chr12 15154033 15154082 -106103448 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 700 370 317 16 24 chr12 15155237 15155360 -106102170 + MLT1H2 LTR MaLR 69 190 -299 2 700 22 56 0 0 chr12 15155637 15155673 -106101857 + AT_rich Low_complexity Low_complexity 1 36 0 2 700 567 108 0 0 chr12 15155818 15155911 -106101619 + (TG)n Simple_repeat Simple_repeat 1 93 0 2 700 315 0 0 0 chr12 15155938 15155973 -106101557 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 700 240 398 83 31 chr12 15156201 15156429 -106101101 + Arthur1B DNA Tip100 307 546 -679 2 700 1083 94 0 0 chr12 15156641 15156821 -106100709 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 700 231 265 0 35 chr12 15156821 15156838 -106100692 + polypurine Low_complexity Low_complexity 1 16 0 2 700 1056 96 0 0 chr12 15156838 15157015 -106100515 + (GA)n Simple_repeat Simple_repeat 2 178 0 2 700 231 265 0 35 chr12 15157015 15157083 -106100447 + GA-rich Low_complexity Low_complexity 17 83 0 2 700 21 89 0 0 chr12 15157474 15157530 -106100000 + AT_rich Low_complexity Low_complexity 1 56 0 2 700 370 342 88 34 chr12 15157535 15157798 -106099732 + MLT1A LTR MaLR 98 374 0 2 700 22 0 0 0 chr12 15158008 15158030 -106099500 + AT_rich Low_complexity Low_complexity 1 22 0 2 700 421 385 60 52 chr12 15158889 15159253 -106098277 - L1M4b LINE L1 -6538 796 430 2 700 280 364 158 60 chr12 15159895 15160161 -106097369 - B4 SINE B4 0 292 1 2 700 805 327 139 78 chr12 15160290 15161132 -106096398 + Lx8 LINE L1 6581 7473 0 2 700 644 342 42 28 chr12 15161174 15161457 -106096073 + B4A SINE B4 6 292 0 2 700 27 0 0 0 chr12 15161570 15161597 -106095933 + AT_rich Low_complexity Low_complexity 1 27 0 2 700 333 0 0 0 chr12 15162358 15162395 -106095135 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 700 983 316 72 20 chr12 15162460 15162806 -106094724 - MTEa LTR MaLR -13 366 3 2 700 2768 16 3 0 chr12 15162923 15163244 -106094286 + RLTRETN_Mm LTR ERVK 1 322 0 2 700 6048 19 0 1 chr12 15163244 15163938 -106093592 + MMETn-int LTR ERVK 1 693 -4151 2 700 5535 56 0 0 chr12 15164460 15165152 -106092378 + L1_Mus1 LINE L1 5876 6567 0 2 700 393 22 0 0 chr12 15165325 15165371 -106092159 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 700 183 129 0 0 chr12 15165639 15165670 -106091860 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2 700 369 223 0 0 chr12 15165877 15165971 -106091559 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 700 44 46 0 0 chr12 15168508 15168573 -106088957 + AT_rich Low_complexity Low_complexity 1 65 0 2 700 27241 133 20 62 chr12 15169224 15176034 -106081496 + L1_Mus2 LINE L1 222 6566 0 2 700 720 334 68 18 chr12 15176691 15177087 -106080443 + L1MA9 LINE L1 5657 6072 -240 2 700 1432 39 0 0 chr12 15177103 15177284 -106080246 + L1Md_A LINE L1 6402 6582 0 2 700 369 0 0 0 chr12 15177323 15177364 -106080166 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 700 446 322 0 0 chr12 15177380 15177495 -106080035 - ID_B1 SINE B4 -32 192 78 2 700 298 249 40 107 chr12 15177495 15177720 -106079810 + L1MA9 LINE L1 6096 6305 -7 2 700 600 328 68 5 chr12 15177910 15178100 -106079430 + B3 SINE B2 1 202 -14 2 700 333 0 0 0 chr12 15178100 15178137 -106079393 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 2 700 180 0 0 0 chr12 15179312 15179332 -106078198 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2 700 1692 123 21 14 chr12 15179332 15179612 -106077918 - Lx3A LINE L1 -1 6980 6699 2 700 2263 53 0 3 chr12 15179618 15179904 -106077626 + L1Md_F3 LINE L1 6286 6570 -14 2 700 225 0 0 0 chr12 15179977 15180002 -106077528 + (A)n Simple_repeat Simple_repeat 1 25 0 2 700 3087 23 5 78 chr12 15180342 15180763 -106076767 + RLTR10 LTR ERVK 1 390 0 2 700 217 0 61 0 chr12 15181134 15181167 -106076363 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 700 351 0 0 0 chr12 15181992 15182031 -106075499 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 700 329 322 26 9 chr12 15182032 15182148 -106075382 - RSINE1 SINE B4 -44 121 4 2 700 25 31 0 0 chr12 15182216 15182248 -106075282 + AT_rich Low_complexity Low_complexity 1 32 0 2 700 21 57 0 0 chr12 15182943 15182978 -106074552 + AT_rich Low_complexity Low_complexity 1 35 0 2 700 399 358 6 41 chr12 15183112 15183281 -106074249 + RSINE1 SINE B4 3 165 0 3 700 321 135 0 0 chr12 15183282 15183334 -106074196 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 700 794 86 9 0 chr12 15183334 15183450 -106074080 + (GA)n Simple_repeat Simple_repeat 2 118 0 3 700 2496 194 88 20 chr12 15183450 15183986 -106073544 + Lx5 LINE L1 6345 6916 -134 3 700 186 133 0 0 chr12 15184651 15184681 -106072849 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 700 263 265 14 42 chr12 15184753 15184824 -106072706 - RSINE1 SINE B4 -10 155 87 3 700 948 211 112 49 chr12 15186570 15186918 -106070612 + L1_Rod LINE L1 4915 5284 -563 3 700 215 31 0 30 chr12 15186918 15186951 -106070579 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 700 240 35 0 0 chr12 15186952 15186981 -106070549 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 700 192 378 87 13 chr12 15187632 15187782 -106069748 + MIRb SINE MIR 47 207 -61 3 700 339 304 54 0 chr12 15189287 15189399 -106068131 - B1_Mur1 SINE Alu -10 139 22 3 700 21 0 0 0 chr12 15189452 15189473 -106068057 + AT_rich Low_complexity Low_complexity 1 21 0 3 700 448 195 72 42 chr12 15189933 15190099 -106067431 - Lx9 LINE L1 -5 7639 7469 3 700 1100 56 35 0 chr12 15191019 15191161 -106066369 + B1_Mm SINE Alu 1 147 0 3 700 24 0 0 0 chr12 15191219 15191243 -106066287 + AT_rich Low_complexity Low_complexity 1 24 0 3 700 1026 130 23 34 chr12 15191570 15191586 -106065944 - B2_Mm2 SINE B2 -22 173 161 3 700 1185 28 0 0 chr12 15191586 15191727 -106065803 + (TCTA)n Simple_repeat Simple_repeat 1 141 0 3 700 1026 130 23 34 chr12 15191727 15191885 -106065645 - B2_Mm2 SINE B2 -35 160 1 3 700 2260 112 22 0 chr12 15191915 15192235 -106065295 + ORR1A2 LTR MaLR 1 327 0 3 700 530 287 160 3 chr12 15193308 15193626 -106063904 + MTD LTR MaLR 35 401 -18 3 700 197 86 57 0 chr12 15193931 15193966 -106063564 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 700 445 315 0 0 chr12 15194199 15194310 -106063220 - RSINE1 SINE B4 -44 121 11 3 700 327 292 116 6 chr12 15194758 15194930 -106062600 + L1MD3 LINE L1 7432 7622 -373 3 700 264 250 21 58 chr12 15195016 15195130 -106062400 + L1MD3 LINE L1 7659 7864 -131 3 700 24 0 0 0 chr12 15196656 15196680 -106060850 + AT_rich Low_complexity Low_complexity 1 24 0 3 700 345 303 53 29 chr12 15196967 15197137 -106060393 + MER2 DNA MER2_type 92 265 -80 3 87 38567 8 0 1 chr12 15198283 15204476 -106053054 + L1Md_A LINE L1 1 5586 -297 3 701 9002 3 0 0 chr12 15204476 15205472 -106052058 + L1Md_A LINE L1 5587 6582 0 3 701 261 359 31 5 chr12 15206506 15206699 -106050831 + L1MDb LINE L1 706 903 -5506 3 701 1104 88 0 7 chr12 15206889 15207037 -106050493 + B1_Mus1 SINE Alu 1 147 -1 3 701 236 30 0 29 chr12 15207042 15207076 -106050454 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 3 701 6836 199 38 10 chr12 15207231 15209573 -106047957 - Lx5 LINE L1 -2 7048 4630 3 701 195 100 0 0 chr12 15209582 15209612 -106047918 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 701 351 317 56 35 chr12 15209941 15209985 -106047545 - B3 SINE B2 -1 215 168 3 701 201 108 0 0 chr12 15209985 15210022 -106047508 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 701 448 292 2 1 chr12 15210022 15210121 -106047409 - B3A SINE B2 -49 167 69 3 701 458 322 109 53 chr12 15210181 15210630 -106046900 + L1MDb LINE L1 3466 3939 -2467 3 701 260 289 142 48 chr12 15210650 15210966 -106046564 + L1MD LINE L1 4370 4715 -1431 3 701 349 361 68 14 chr12 15211312 15211534 -106045996 - Lx9 LINE L1 -305 7339 7106 3 701 1020 119 17 0 chr12 15212767 15212944 -106044586 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 701 1491 216 83 14 chr12 15213017 15213378 -106044152 + MTD LTR MaLR 20 405 -14 3 701 285 377 0 50 chr12 15213405 15213525 -106044005 + RSINE1 SINE B4 4 117 -48 3 701 384 22 0 0 chr12 15213565 15213610 -106043920 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 3 701 247 254 59 15 chr12 15214445 15214513 -106043017 + MLT1L LTR MaLR 197 267 -343 3 701 271 282 62 60 chr12 15214945 15215169 -106042361 + L1MB7 LINE L1 5818 6062 -118 3 701 1241 170 51 105 chr12 15215170 15215485 -106042045 - RMER10B LTR ERVL -47 351 54 3 701 573 299 48 5 chr12 15215572 15215760 -106041770 + B3A SINE B2 1 196 -2 3 701 9078 59 3 2 chr12 15215760 15216945 -106040585 - L1_Mm LINE L1 -1509 4374 3189 3 701 4334 75 3 26 chr12 15216945 15217558 -106039972 + L1Md_F2 LINE L1 5983 6581 -1 3 701 1506 107 0 5 chr12 15217974 15218191 -106039339 - L1_Mus2 LINE L1 0 6566 6351 3 701 1995 59 4 0 chr12 15218192 15218447 -106039083 + L1_Mus2 LINE L1 6078 6333 -233 3 701 332 240 428 13 chr12 15218932 15219084 -106038446 + B3 SINE B2 1 215 -1 3 701 33 0 0 0 chr12 15219558 15219591 -106037939 + AT_rich Low_complexity Low_complexity 1 33 0 3 701 577 322 91 26 chr12 15219592 15219670 -106037860 - Lx9 LINE L1 -38 7606 7515 3 701 270 0 0 0 chr12 15219670 15219700 -106037830 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 701 577 322 91 26 chr12 15219700 15220004 -106037526 - Lx9 LINE L1 -130 7514 7199 3 701 750 315 75 19 chr12 15220804 15221423 -106036107 - L1MA5 LINE L1 -79 6218 5552 3 701 557 110 0 11 chr12 15221926 15222018 -106035512 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 701 217 118 0 38 chr12 15222293 15222346 -106035184 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 701 219 36 0 0 chr12 15222595 15222623 -106034907 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3 701 419 355 77 19 chr12 15224380 15224587 -106032943 - MER20 DNA MER1_type 0 219 1 3 701 1332 179 5 0 chr12 15224671 15224894 -106032636 + URR1A DNA MER1_type 2 225 -1 3 701 923 186 77 48 chr12 15226809 15227018 -106030512 - URR1A DNA MER1_type -5 221 7 3 701 702 286 202 22 chr12 15227233 15228027 -106029503 - L1MA5 LINE L1 -22 6278 5343 3 701 630 242 91 5 chr12 15228102 15228301 -106029229 - L1MA5 LINE L1 -1115 5028 4813 3 701 207 0 0 0 chr12 15228368 15228391 -106029139 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 701 1038 276 112 6 chr12 15229305 15229644 -106027886 - MTD LTR MaLR -18 401 27 3 701 703 374 63 38 chr12 15230115 15230671 -106026859 + MER82 DNA MER2_type 83 652 -1 3 701 749 323 26 42 chr12 15230767 15231032 -106026498 + B4 SINE B4 2 262 -30 3 701 750 159 32 58 chr12 15231072 15231226 -106026304 + B1_Mur4 SINE Alu 1 150 0 3 701 382 326 41 34 chr12 15231772 15231918 -106025612 + B1_Mur3 SINE Alu 1 147 -2 3 701 1154 59 0 0 chr12 15232931 15233083 -106024447 - L1_Mus1 LINE L1 0 6567 6416 3 701 477 34 0 0 chr12 15233823 15233882 -106023648 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 701 332 32 65 0 chr12 15233920 15233982 -106023548 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 701 263 328 92 56 chr12 15234702 15234844 -106022686 + ORR1E LTR MaLR 6 152 -207 3 701 535 27 27 0 chr12 15234959 15235032 -106022498 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 701 765 168 61 0 chr12 15235494 15235625 -106021905 + B1_Mus1 SINE Alu 2 140 -8 3 701 207 0 0 0 chr12 15235627 15235650 -106021880 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 701 241 337 82 48 chr12 15236797 15237003 -106020527 + MLT1D LTR MaLR 286 498 -7 3 701 1081 309 94 0 chr12 15237279 15237642 -106019888 - MTD LTR MaLR -5 414 18 3 701 342 45 0 0 chr12 15237660 15237704 -106019826 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 701 680 189 21 17 chr12 15238007 15238248 -106019282 + CT-rich Low_complexity Low_complexity 1 241 0 3 701 562 269 126 100 chr12 15238248 15238558 -106018972 + MTEb LTR MaLR 60 377 -2 3 701 381 300 83 35 chr12 15238695 15238723 -106018807 - MTD LTR MaLR -14 405 377 3 701 192 77 0 0 chr12 15238723 15238749 -106018781 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 701 381 300 83 35 chr12 15238749 15238865 -106018665 - MTD LTR MaLR -43 376 254 3 701 225 180 0 0 chr12 15239058 15239108 -106018422 + T-rich Low_complexity Low_complexity 1 50 0 3 701 2009 198 26 19 chr12 15239913 15240382 -106017148 - L1_Mur3 LINE L1 -1576 4304 3833 3 701 249 40 39 39 chr12 15240382 15240434 -106017096 + (TTTTTG)n Simple_repeat Simple_repeat 1 52 0 3 701 2364 276 56 43 chr12 15240448 15241284 -106016246 + Lx7 LINE L1 6381 7227 -469 3 701 390 21 0 0 chr12 15241349 15241396 -106016134 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 701 540 97 0 0 chr12 15241396 15241489 -106016041 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 701 349 273 42 74 chr12 15241626 15241816 -106015714 + Lx8 LINE L1 7285 7468 -5 3 701 5213 140 49 5 chr12 15243371 15244246 -106013284 + Lx2 LINE L1 6082 6995 -2 3 701 4330 207 89 46 chr12 15244342 15245548 -106011982 - MTC-int LTR MaLR 0 1258 1 3 701 1957 199 6 114 chr12 15245548 15245823 -106011707 - MTC LTR MaLR 0 421 197 3 701 939 69 0 0 chr12 15245823 15245953 -106011577 - L1_Mus2 LINE L1 -2 6564 6435 3 701 1957 199 6 114 chr12 15245953 15246149 -106011381 - MTC LTR MaLR -225 196 1 3 701 941 311 52 41 chr12 15247736 15247857 -106009673 - L1MB4 LINE L1 -1 6179 6055 3 701 219 36 0 0 chr12 15247857 15247885 -106009645 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 701 941 311 52 41 chr12 15247885 15248416 -106009114 - L1MB4 LINE L1 -126 6054 5521 3 701 1571 308 71 27 chr12 15248514 15249208 -106008322 - Lx7 LINE L1 -987 6709 5986 3 701 1232 319 60 18 chr12 15249200 15249612 -106007918 + Lx7 LINE L1 6724 7160 -536 3 701 2997 116 5 110 chr12 15249612 15250192 -106007338 - MURVY-LTR LTR ERV1 0 519 1 3 701 1232 319 60 18 chr12 15250192 15250334 -106007196 + Lx7 LINE L1 7161 7301 -395 3 701 250 232 0 59 chr12 15250350 15250469 -106007061 + T-rich Low_complexity Low_complexity 3 114 0 3 701 820 286 25 0 chr12 15250579 15250862 -106006668 - RCHARR1 DNA MER1_type -77 897 608 3 701 1876 50 8 0 chr12 15250864 15251105 -106006425 + MTA_Mm LTR MaLR 154 396 0 3 701 1405 81 57 0 chr12 15251105 15251316 -106006214 + MTA_Mm-int LTR MaLR 1 223 -875 3 701 4323 112 35 62 chr12 15251316 15252088 -106005442 - RMER17A LTR ERVK 0 751 1 3 701 324 0 0 0 chr12 15252509 15252545 -106004985 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 701 293 0 0 26 chr12 15254778 15254816 -106002714 + (TTA)n Simple_repeat Simple_repeat 3 39 0 3 701 422 286 83 11 chr12 15254821 15255004 -106002526 - Lx3C LINE L1 -17 7041 6781 3 701 1902 194 27 3 chr12 15254971 15255337 -106002193 + Lx2B LINE L1 6411 6785 -215 3 701 4320 81 87 0 chr12 15255872 15256492 -106001038 + L1_Mus3 LINE L1 5821 6494 -144 3 701 423 0 0 0 chr12 15256517 15256564 -106000966 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 701 333 0 0 0 chr12 15256564 15256600 -106000930 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 701 306 111 0 0 chr12 15256621 15256673 -106000857 + L1_Mus3 LINE L1 6456 6507 -129 4 701 204 40 0 0 chr12 15256689 15256714 -106000816 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 701 283 237 11 0 chr12 15256725 15256818 -106000712 - Lx9 LINE L1 -130 7514 7421 4 701 806 150 121 6 chr12 15256837 15257011 -106000519 + L1_Mus3 LINE L1 6445 6638 0 4 701 366 123 0 0 chr12 15257116 15257173 -106000357 + (CATA)n Simple_repeat Simple_repeat 2 58 0 4 701 746 48 65 0 chr12 15257174 15257298 -106000232 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 4 701 686 330 55 32 chr12 15257299 15257678 -105999852 - Lx9 LINE L1 -184 7460 7073 4 701 351 0 0 0 chr12 15257678 15257717 -105999813 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 701 453 36 0 0 chr12 15257717 15257772 -105999758 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 701 520 99 8 83 chr12 15257780 15257901 -105999629 + Lx LINE L1 6535 6646 -8 4 701 2082 278 23 9 chr12 15257917 15258483 -105999047 + Lx9 LINE L1 6411 6984 -660 4 701 828 299 97 30 chr12 15259453 15259919 -105997611 + Lx8 LINE L1 6973 7469 -4 4 701 40301 15 1 6 chr12 15260333 15266485 -105991045 - L1Md_A LINE L1 0 6582 465 4 701 453 347 48 10 chr12 15266502 15266683 -105990847 - B3A SINE B2 0 216 32 4 701 818 267 20 5 chr12 15266685 15266881 -105990649 - MTD LTR MaLR -220 199 1 4 701 2497 123 12 42 chr12 15267669 15268093 -105989437 - RLTR9F LTR ERVK -4 411 1 4 701 537 16 0 0 chr12 15269575 15269637 -105987893 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 701 2255 51 0 0 chr12 15269733 15270009 -105987521 - L1Md_T LINE L1 0 6582 6307 4 701 4162 88 48 0 chr12 15270091 15270672 -105986858 + L1_Mus3 LINE L1 6020 6628 -10 4 701 1479 85 0 0 chr12 15270672 15270871 -105986659 + L1_Mm LINE L1 4640 4838 -1045 4 701 4678 65 2 13 chr12 15270871 15271493 -105986037 + L1Md_F2 LINE L1 5968 6582 0 4 701 278 350 31 26 chr12 15271561 15271752 -105985778 - L1MA6 LINE L1 -232 6068 5877 4 701 247 306 16 24 chr12 15271947 15272074 -105985456 + L1M3 LINE L1 4709 4834 -1306 4 701 553 284 35 0 chr12 15273098 15273239 -105984291 + RSINE1 SINE B4 12 157 -8 4 701 426 94 0 0 chr12 15273243 15273307 -105984223 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 701 345 85 0 0 chr12 15273795 15273842 -105983688 - HAL1-3A_ME LINE L1 -836 2022 1976 4 701 275 295 109 5 chr12 15274781 15274965 -105982565 - L1M2 LINE L1 -1026 5117 4915 4 701 323 314 193 8 chr12 15275123 15275232 -105982298 - Lx8 LINE L1 -111 7362 7218 4 701 801 81 0 0 chr12 15275232 15275355 -105982175 + (CA)n Simple_repeat Simple_repeat 1 123 0 4 701 323 314 193 8 chr12 15275355 15275483 -105982047 - Lx8 LINE L1 -256 7217 7081 4 701 286 311 103 9 chr12 15275652 15275784 -105981746 - L1M2 LINE L1 -1781 4362 4211 4 701 4515 58 3 0 chr12 15275784 15276349 -105981181 - L1_Mus1 LINE L1 0 6567 6001 4 701 286 311 103 9 chr12 15276349 15276440 -105981090 - L1M2 LINE L1 -1933 4210 4118 4 701 308 286 77 18 chr12 15276436 15276657 -105980873 + L1M2 LINE L1 5338 5571 -720 4 701 244 222 0 0 chr12 15276670 15276724 -105980806 - B3A SINE B2 -143 55 2 4 701 558 54 0 0 chr12 15277483 15277557 -105979973 + (GA)n Simple_repeat Simple_repeat 2 75 0 4 701 282 291 19 19 chr12 15277576 15277681 -105979849 - L1M6 LINE L1 -4686 1810 1706 4 701 320 335 75 90 chr12 15278360 15278560 -105978970 + LTR86A1 LTR ERVL 141 337 -176 4 701 702 324 42 89 chr12 15278971 15279422 -105978108 - MER31B LTR ERV1 -24 442 13 4 701 1708 254 63 17 chr12 15279536 15279949 -105977581 + Lx6 LINE L1 7028 7459 -1 4 701 843 64 0 0 chr12 15279968 15280078 -105977452 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 4 701 1021 197 52 0 chr12 15280769 15280982 -105976548 + URR1A DNA MER1_type 1 224 -2 4 701 248 307 0 39 chr12 15281158 15281236 -105976294 - MTE-int LTR MaLR -51 1529 1455 4 701 2863 82 5 2 chr12 15281496 15281889 -105975641 + L1_Mus3 LINE L1 6245 6638 0 4 701 284 216 10 0 chr12 15282001 15282098 -105975432 + (TG)n Simple_repeat Simple_repeat 2 99 0 4 701 200 238 0 0 chr12 15282146 15282188 -105975342 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 4 701 197 314 18 79 chr12 15282495 15282609 -105974921 - MIR SINE MIR -153 109 3 4 701 23 0 0 0 chr12 15283198 15283221 -105974309 + AT_rich Low_complexity Low_complexity 1 23 0 4 701 324 0 0 0 chr12 15284085 15284121 -105973409 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 701 211 196 0 51 chr12 15284674 15284733 -105972797 + (TATG)n Simple_repeat Simple_repeat 3 58 0 4 701 305 288 33 108 chr12 15284813 15284979 -105972551 - B4 SINE B4 -82 142 2 4 701 586 233 15 8 chr12 15285399 15285529 -105972001 + ORR1D1 LTR MaLR 3 133 -241 4 701 23 0 0 0 chr12 15285755 15285778 -105971752 + AT_rich Low_complexity Low_complexity 1 23 0 4 701 554 283 120 19 chr12 15286333 15286657 -105970873 - ORR1E LTR MaLR -2 357 1 4 701 23 0 0 0 chr12 15286874 15286897 -105970633 + AT_rich Low_complexity Low_complexity 1 23 0 4 701 25 65 0 0 chr12 15287014 15287060 -105970470 + AT_rich Low_complexity Low_complexity 1 46 0 4 701 1613 174 34 49 chr12 15287875 15288202 -105969328 - ORR1A3 LTR MaLR 0 326 5 4 701 202 29 28 28 chr12 15289498 15289534 -105967996 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 701 208 95 23 23 chr12 15289566 15289609 -105967921 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 4 701 24 0 0 0 chr12 15289979 15290003 -105967527 + AT_rich Low_complexity Low_complexity 1 24 0 4 701 378 0 0 0 chr12 15290891 15290933 -105966597 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 701 352 336 40 32 chr12 15290935 15291061 -105966469 - B4A SINE B4 -165 127 1 4 701 354 309 161 89 chr12 15291292 15291672 -105965858 + MLT2D LTR ERVL 6 412 -2 4 701 805 236 113 0 chr12 15292837 15293040 -105964490 + URR1A DNA MER1_type 1 226 0 4 701 415 269 33 113 chr12 15294885 15295036 -105962494 + B3A SINE B2 35 173 -25 4 701 336 119 0 0 chr12 15295116 15295175 -105962355 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 701 30 0 0 0 chr12 15295269 15295299 -105962231 + AT_rich Low_complexity Low_complexity 1 30 0 4 701 650 128 8 0 chr12 15295892 15296009 -105961521 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 4 701 21 36 0 0 chr12 15296247 15296275 -105961255 + AT_rich Low_complexity Low_complexity 1 28 0 4 701 348 43 0 0 chr12 15296318 15296364 -105961166 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 701 426 264 61 11 chr12 15296856 15297036 -105960494 - MER53 DNA hAT 0 193 5 4 701 270 0 0 0 chr12 15297891 15297921 -105959609 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 701 23 33 0 0 chr12 15298537 15298567 -105958963 + AT_rich Low_complexity Low_complexity 1 30 0 4 701 611 317 58 0 chr12 15298821 15299029 -105958501 - Lx8 LINE L1 -252 7221 7002 4 701 2143 133 3 3 chr12 15299278 15299602 -105957928 + ORR1A2 LTR MaLR 4 327 0 4 701 362 333 81 0 chr12 15300194 15300317 -105957213 + B4A SINE B4 152 284 -8 4 701 381 75 0 0 chr12 15300322 15300375 -105957155 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 701 405 0 0 0 chr12 15300375 15300419 -105957111 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 701 499 301 29 0 chr12 15301392 15301565 -105955965 - B3A SINE B2 -18 180 3 4 701 264 97 16 31 chr12 15301572 15301636 -105955894 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 4 701 325 349 28 0 chr12 15302588 15302694 -105954836 - PB1D10 SINE Alu -7 110 2 4 701 640 278 48 18 chr12 15302694 15302771 -105954759 - ID SINE ID -142 82 1 4 701 2331 183 13 20 chr12 15304768 15305226 -105952304 + RMER6-int LTR ERVK 1667 2121 -1056 4 701 2334 155 14 12 chr12 15305248 15305680 -105951850 + RMER6-int LTR ERVK 2104 2536 -641 4 701 383 154 0 44 chr12 15305676 15305744 -105951786 + RMER6-int LTR ERVK 3044 3108 -69 4 701 827 318 23 16 chr12 15305914 15306170 -105951360 - MTD LTR MaLR -143 276 19 4 701 2323 110 12 0 chr12 15306174 15306511 -105951019 + L1_Mus3 LINE L1 6292 6632 -6 4 701 24 0 0 0 chr12 15306527 15306551 -105950979 + AT_rich Low_complexity Low_complexity 1 24 0 4 701 10023 29 9 0 chr12 15306573 15307764 -105949766 + L1Md_F2 LINE L1 4385 5586 -297 4 701 7920 49 1 8 chr12 15307764 15307811 -105949719 + L1Md_F2 LINE L1 5587 5633 -949 4 701 2181 37 86 0 chr12 15307811 15308080 -105949450 + RLTR10B LTR ERVK 1 292 0 4 701 7920 49 1 8 chr12 15308080 15309022 -105948508 + L1Md_F2 LINE L1 5634 6569 -13 4 701 21 36 0 0 chr12 15309048 15309076 -105948454 + AT_rich Low_complexity Low_complexity 1 28 0 4 701 27 0 0 0 chr12 15309689 15309716 -105947814 + AT_rich Low_complexity Low_complexity 1 27 0 4 701 475 310 78 0 chr12 15309962 15310091 -105947439 + B3A SINE B2 52 190 -8 4 701 6201 106 5 18 chr12 15310104 15311028 -105946502 + Lx LINE L1 5737 6648 -6 4 701 515 313 32 26 chr12 15312149 15312303 -105945227 + B4A SINE B4 1 155 -137 4 701 384 40 0 0 chr12 15312306 15312356 -105945174 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 701 11009 91 6 9 chr12 15312385 15314730 -105942800 + L1_Mus1 LINE L1 4233 6566 -1 4 701 2255 189 101 36 chr12 15314815 15314975 -105942555 - RLTR11A LTR ERVK -2 526 375 4 701 1398 61 77 0 chr12 15314975 15315171 -105942359 - L1Md_F3 LINE L1 -14 6570 6360 4 701 2255 189 101 36 chr12 15315171 15315504 -105942026 - RLTR11A LTR ERVK -154 374 1 4 701 5844 130 39 1 chr12 15316029 15316942 -105940588 + Lx LINE L1 5702 6649 -5 4 701 237 33 0 0 chr12 15317744 15317774 -105939756 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4 701 3240 148 25 27 chr12 15317792 15318355 -105939175 - Lx4A LINE L1 -1 7057 6496 4 701 251 341 19 127 chr12 15318489 15318701 -105938829 + RMER4B LTR ERVK 25 213 -372 4 701 745 306 32 92 chr12 15319087 15319490 -105938040 + MTE2a LTR MaLR 1 379 0 4 701 250 350 80 31 chr12 15319560 15319722 -105937808 + MER67C LTR ERV1 227 396 -315 5 701 7107 87 22 3 chr12 15319894 15320881 -105936649 - L1_Mus4 LINE L1 -5 6631 5626 5 701 276 388 0 40 chr12 15321036 15321162 -105936368 - RSINE1 SINE B4 -30 135 15 5 701 213 121 0 0 chr12 15322451 15322484 -105935046 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 701 331 330 0 0 chr12 15322561 15322670 -105934860 + (CA)n Simple_repeat Simple_repeat 2 110 0 5 701 3835 41 0 0 chr12 15323946 15324409 -105933121 + L1Md_F2 LINE L1 5124 5586 -297 5 701 8211 39 1 4 chr12 15324409 15325408 -105932122 + L1Md_F2 LINE L1 5587 6582 0 5 701 629 282 109 24 chr12 15325515 15325726 -105931804 + B4 SINE B4 1 229 -63 5 701 705 76 0 0 chr12 15325850 15325955 -105931575 + (TC)n Simple_repeat Simple_repeat 2 106 0 5 701 539 237 14 0 chr12 15326370 15326509 -105931021 + L1M3 LINE L1 4079 4219 -1921 5 701 1260 246 73 24 chr12 15326521 15326850 -105930680 + RMER13A LTR ERVK 14 358 -502 5 701 400 140 11 11 chr12 15326898 15326992 -105930538 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 701 28 29 0 0 chr12 15327092 15327127 -105930403 + AT_rich Low_complexity Low_complexity 1 35 0 5 701 203 367 114 23 chr12 15328516 15328647 -105928883 - L2a LINE L2 -2 3424 3282 5 701 465 66 0 0 chr12 15329968 15330029 -105927501 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 701 450 0 0 0 chr12 15330040 15330090 -105927440 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 701 1728 144 0 4 chr12 15331386 15331664 -105925866 + L1_Mm LINE L1 4723 4999 -884 5 701 282 50 45 91 chr12 15331777 15331843 -105925687 - L1Md_F2 LINE L1 0 6582 6520 5 701 21 0 0 0 chr12 15332011 15332032 -105925498 + AT_rich Low_complexity Low_complexity 1 21 0 5 701 255 61 0 0 chr12 15332037 15332070 -105925460 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 701 34 72 0 0 chr12 15332087 15332156 -105925374 + AT_rich Low_complexity Low_complexity 1 69 0 5 701 256 283 32 11 chr12 15332202 15332295 -105925235 + Lx5 LINE L1 5600 5694 -1356 5 701 939 298 80 33 chr12 15332328 15332717 -105924813 - Lx8 LINE L1 0 7473 7067 5 701 1323 298 87 0 chr12 15333229 15333726 -105923804 + Lx8 LINE L1 6756 7295 -178 5 701 26 0 0 0 chr12 15334428 15334454 -105923076 + AT_rich Low_complexity Low_complexity 1 26 0 5 701 441 0 0 0 chr12 15335162 15335211 -105922319 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 701 529 139 19 0 chr12 15335213 15335321 -105922209 + GA-rich Low_complexity Low_complexity 2 111 0 5 702 299 61 41 0 chr12 15335437 15335486 -105922044 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 702 450 0 0 0 chr12 15336380 15336430 -105921100 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 702 392 331 44 0 chr12 15336432 15336568 -105920962 - B3A SINE B2 -47 151 10 5 702 426 262 171 37 chr12 15336660 15336906 -105920624 - B4A SINE B4 -12 280 2 5 702 201 281 29 77 chr12 15338729 15338833 -105918697 + L2a LINE L2 3243 3341 -85 5 702 5616 123 16 2 chr12 15339553 15340399 -105917131 - Lx LINE L1 -14 6640 5783 5 702 3415 115 6 2 chr12 15340416 15340921 -105916609 - L1_Mus3 LINE L1 -7 6631 6125 5 702 3563 65 0 52 chr12 15340921 15341455 -105916075 + L1_Mus3 LINE L1 5619 6124 -514 5 702 3531 158 55 3 chr12 15341480 15342172 -105915358 - Lx LINE L1 -190 5693 4966 5 702 4666 158 16 29 chr12 15342170 15342343 -105915187 + L1_Mm LINE L1 4054 4234 -1649 5 702 309 26 0 0 chr12 15342343 15342381 -105915149 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 702 1124 59 0 0 chr12 15342383 15342518 -105915012 - B1_Mm SINE Alu -12 135 1 5 702 4666 158 16 29 chr12 15342518 15343249 -105914281 + L1_Mm LINE L1 4235 4948 -935 5 702 2204 176 21 55 chr12 15343464 15343933 -105913597 - RLTR11B LTR ERVK 0 453 1 5 702 599 129 8 17 chr12 15344281 15344399 -105913131 + Lx2B LINE L1 6866 6982 -18 5 702 222 64 82 41 chr12 15344521 15344570 -105912960 + T-rich Low_complexity Low_complexity 6 56 0 5 702 761 98 195 8 chr12 15344572 15344695 -105912835 - B1_Mus2 SINE Alu 0 147 2 5 702 245 323 52 38 chr12 15346986 15347149 -105910381 + ORR1A1 LTR MaLR 110 292 -54 5 702 234 0 0 0 chr12 15347149 15347175 -105910355 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 702 313 286 69 18 chr12 15347192 15347409 -105910121 + L1MC1 LINE L1 5616 5843 -490 5 702 4927 118 4 0 chr12 15347408 15348173 -105909357 - L1_Mus2 LINE L1 -3 5880 5113 5 702 4391 89 62 21 chr12 15348173 15348840 -105908690 + L1_Mus2 LINE L1 5873 6566 0 5 702 566 327 136 31 chr12 15348851 15349299 -105908231 + L1MC1 LINE L1 5828 6322 -11 5 702 3413 255 54 13 chr12 15349379 15350553 -105906977 + Lx5 LINE L1 5720 6973 -3 5 702 1111 72 0 0 chr12 15351381 15351519 -105906011 + B1_Mus1 SINE Alu 2 139 -9 5 702 281 26 26 0 chr12 15351519 15351557 -105905973 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 702 1121 72 0 0 chr12 15351566 15351705 -105905825 + B1_Mm SINE Alu 1 139 -8 5 702 30 0 0 0 chr12 15351920 15351950 -105905580 + AT_rich Low_complexity Low_complexity 1 30 0 5 702 425 290 9 9 chr12 15352111 15352219 -105905311 + ID_B1 SINE B4 103 210 -14 5 702 323 328 47 54 chr12 15352219 15352240 -105905290 + B1F SINE Alu 22 149 0 5 702 333 0 0 0 chr12 15352576 15352613 -105904917 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 702 264 122 0 0 chr12 15353860 15353901 -105903629 + (ATGGTG)n Simple_repeat Simple_repeat 1 41 0 5 702 1505 33 0 0 chr12 15354451 15354634 -105902896 + L1Md_F2 LINE L1 5404 5586 -297 5 702 7880 57 0 3 chr12 15354635 15355621 -105901909 + L1Md_F2 LINE L1 5588 6570 -12 5 702 391 241 54 108 chr12 15355716 15355846 -105901684 + ID_B1 SINE B4 2 124 -100 5 702 264 130 0 0 chr12 15355946 15355992 -105901538 + (A)n Simple_repeat Simple_repeat 1 46 0 5 702 670 316 52 42 chr12 15356309 15356596 -105900934 + RMER15 LTR ERVL 286 575 0 5 702 21 0 0 31 chr12 15356603 15356621 -105900909 + AT_rich Low_complexity Low_complexity 1 18 0 5 702 528 45 0 0 chr12 15356621 15356688 -105900842 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 702 21 0 0 31 chr12 15356688 15356701 -105900829 + AT_rich Low_complexity Low_complexity 1 13 0 5 702 293 189 71 40 chr12 15356716 15356815 -105900715 + L1MA5 LINE L1 6175 6276 -24 5 702 201 94 0 0 chr12 15357454 15357486 -105900044 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 5 702 29475 98 6 0 chr12 15357496 15358812 -105898718 - L1_Mus1 LINE L1 -3 6564 5231 5 702 567 0 0 0 chr12 15358812 15358875 -105898655 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 702 29475 99 24 1 chr12 15358875 15363778 -105893752 - L1_Mus1 LINE L1 -653 5230 217 5 702 2866 140 43 35 chr12 15363938 15364422 -105893108 + RLTR20A2 LTR ERVK 1 480 -98 5 702 234 91 0 0 chr12 15364422 15364455 -105893075 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 702 2866 190 52 22 chr12 15364455 15364502 -105893028 + RLTR20A2 LTR ERVK 434 515 -63 5 702 243 0 0 0 chr12 15364640 15364667 -105892863 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 702 246 62 0 0 chr12 15365400 15365432 -105892098 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 5 702 943 289 52 57 chr12 15365759 15366163 -105891367 + MTE2a LTR MaLR 6 419 0 5 702 2137 110 31 6 chr12 15366164 15366485 -105891045 + ORR1A4 LTR MaLR 1 329 0 5 702 24 32 0 0 chr12 15366947 15366978 -105890552 + AT_rich Low_complexity Low_complexity 1 31 0 5 702 323 279 61 24 chr12 15367149 15367314 -105890216 + L1M5 LINE L1 5551 5721 -458 5 702 450 219 344 0 chr12 15367682 15367842 -105889688 + B3 SINE B2 2 216 0 5 702 346 393 40 77 chr12 15368085 15368408 -105889122 + RLTR25A LTR ERVK 1 311 -792 5 702 6914 98 32 5 chr12 15368594 15368671 -105888859 + Lx3_Mus LINE L1 5957 6033 -976 5 702 636 14 0 0 chr12 15368671 15368744 -105888786 + (GGGA)n Simple_repeat Simple_repeat 4 76 0 5 702 6914 98 32 5 chr12 15368744 15369691 -105887839 + Lx3_Mus LINE L1 6034 7007 -2 5 702 328 305 84 79 chr12 15370331 15370509 -105887021 + RLTR25B LTR ERVK 850 1028 0 5 702 490 237 67 156 chr12 15370509 15370689 -105886841 + ID_B1 SINE B4 57 220 -4 5 702 349 226 9 19 chr12 15372280 15372388 -105885142 - Lx9 LINE L1 -7 7637 7531 5 702 333 0 0 0 chr12 15372410 15372447 -105885083 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 702 225 0 0 0 chr12 15372699 15372724 -105884806 + (T)n Simple_repeat Simple_repeat 1 25 0 5 702 486 297 213 12 chr12 15373197 15373446 -105884084 + RMER15 LTR ERVL 276 574 -1 5 702 757 244 42 38 chr12 15373888 15374103 -105883427 + Lx7 LINE L1 7037 7258 -438 5 702 2916 33 0 90 chr12 15374103 15374504 -105883026 + RLTR10B2 LTR ERVK 1 365 0 5 702 757 244 42 38 chr12 15374504 15374552 -105882978 + Lx7 LINE L1 7259 7301 -395 5 702 4021 36 0 0 chr12 15375573 15376074 -105881456 - L1_Mm LINE L1 -855 5028 4528 5 702 227 36 0 0 chr12 15376077 15376105 -105881425 + L1_Mm LINE L1 5638 5665 -218 5 702 7864 44 0 0 chr12 15376109 15377056 -105880474 + L1Md_T LINE L1 5636 6582 0 5 702 22 0 0 0 chr12 15377457 15377479 -105880051 + AT_rich Low_complexity Low_complexity 1 22 0 5 702 1044 269 86 6 chr12 15378031 15378136 -105879394 - Lx6 LINE L1 -15 7445 7336 5 702 189 0 0 0 chr12 15378136 15378157 -105879373 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 702 1044 269 86 6 chr12 15378157 15378399 -105879131 - Lx6 LINE L1 -125 7335 7071 5 702 36283 46 0 3 chr12 15378553 15384984 -105872546 - L1Md_T LINE L1 0 6585 76 5 702 31206 12 0 4 chr12 15385325 15390929 -105866601 + L1Md_A LINE L1 28 5586 -297 5 702 8861 12 0 0 chr12 15390929 15391925 -105865605 + L1Md_A LINE L1 5587 6582 0 5 702 344 156 16 0 chr12 15393710 15393774 -105863756 - MTE2a LTR MaLR -8 371 307 5 702 446 216 41 0 chr12 15393779 15393876 -105863654 - RLTR25A LTR ERVK -855 248 148 5 702 577 238 30 30 chr12 15393936 15394070 -105863460 - RLTR25A LTR ERVK -967 136 3 5 702 322 247 45 0 chr12 15394791 15394880 -105862650 - RLTR25A LTR ERVK -1010 93 1 5 702 396 0 0 0 chr12 15396742 15396786 -105860744 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 702 232 119 17 17 chr12 15397133 15397193 -105860337 + A-rich Low_complexity Low_complexity 2 61 0 5 702 1118 97 0 0 chr12 15397262 15397417 -105860113 + B2_Mm2 SINE B2 4 158 -37 5 702 504 0 0 0 chr12 15397418 15397474 -105860056 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 5 702 747 87 0 0 chr12 15399169 15399273 -105858257 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 702 439 294 40 40 chr12 15400667 15400844 -105856686 - MIR SINE MIR -57 205 29 6 702 450 0 0 0 chr12 15401064 15401114 -105856416 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 702 2317 292 112 24 chr12 15402473 15403442 -105854088 - Lx8 LINE L1 -10 7463 6410 6 702 238 205 0 0 chr12 15403438 15403477 -105854053 - Lx8 LINE L1 -1224 6249 6211 6 702 23 33 0 0 chr12 15404339 15404369 -105853161 + AT_rich Low_complexity Low_complexity 1 30 0 6 702 3228 185 44 2 chr12 15404380 15404977 -105852553 - Lx4A LINE L1 0 7058 6437 6 702 1664 169 103 12 chr12 15404979 15405308 -105852222 + Lx4A LINE L1 6064 6422 -636 6 702 228 336 45 45 chr12 15406164 15406320 -105851210 + RSINE1 SINE B4 4 159 -6 6 702 226 292 92 123 chr12 15407332 15407527 -105850003 - MLT1G1 LTR MaLR -374 205 17 6 702 309 26 0 0 chr12 15407741 15407779 -105849751 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 702 505 328 66 8 chr12 15408133 15408337 -105849193 + B3A SINE B2 2 211 -5 6 702 202 316 0 0 chr12 15409308 15409365 -105848165 + GA-rich Low_complexity Low_complexity 4 60 0 6 702 503 259 41 54 chr12 15409701 15409902 -105847628 - MLT1A0 LTR MaLR -8 400 167 6 702 261 0 0 0 chr12 15410098 15410127 -105847403 + (CATA)n Simple_repeat Simple_repeat 1 29 0 6 702 5931 80 5 4 chr12 15410492 15411293 -105846237 - L1_Mus1 LINE L1 0 6567 5766 6 702 553 234 45 96 chr12 15411294 15411450 -105846080 + RSINE1 SINE B4 17 164 -1 6 702 1812 179 21 80 chr12 15411605 15411981 -105845549 - ORR1B1 LTR MaLR 0 394 41 6 702 463 300 55 37 chr12 15412093 15412366 -105845164 - L1MA5A LINE L1 -358 5939 5662 6 702 29 28 0 0 chr12 15412382 15412418 -105845112 + AT_rich Low_complexity Low_complexity 1 36 0 6 702 351 336 118 9 chr12 15412427 15412655 -105844875 - FordPrefect DNA Tip100 -175 1508 1256 6 702 488 45 15 0 chr12 15413075 15413142 -105844388 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 702 477 366 21 14 chr12 15413189 15413469 -105844061 - B4A SINE B4 -6 286 5 6 702 284 348 129 35 chr12 15413478 15413594 -105843936 - FordPrefect DNA Tip100 -673 1010 884 6 702 22 0 0 0 chr12 15413610 15413632 -105843898 + AT_rich Low_complexity Low_complexity 1 22 0 6 702 387 0 0 0 chr12 15413904 15413947 -105843583 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 702 608 119 9 0 chr12 15413989 15414098 -105843432 + (CATA)n Simple_repeat Simple_repeat 2 111 0 6 702 559 285 52 19 chr12 15414685 15414896 -105842634 + RLTR45 LTR ERVK 265 482 0 6 702 221 264 22 33 chr12 15415158 15415248 -105842282 + CT-rich Low_complexity Low_complexity 1 89 0 6 702 752 153 26 20 chr12 15415476 15415629 -105841901 - Lx7 LINE L1 -16 7680 7527 6 702 758 265 12 6 chr12 15416291 15416462 -105841068 - B3 SINE B2 -40 176 5 6 702 300 281 36 72 chr12 15416549 15416676 -105840854 + PB1 SINE Alu 4 124 -3 6 702 1093 181 73 8 chr12 15416705 15416966 -105840564 - Lx3C LINE L1 -3 6973 6696 6 702 549 0 0 0 chr12 15416972 15417033 -105840497 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 702 306 0 0 0 chr12 15417230 15417264 -105840266 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 702 414 0 0 0 chr12 15418365 15418411 -105839119 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 702 258 81 0 0 chr12 15418705 15418742 -105838788 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 702 1871 62 33 0 chr12 15418765 15419009 -105838521 - L1_Mus1 LINE L1 0 6567 6316 6 702 27 0 0 0 chr12 15419032 15419059 -105838471 + AT_rich Low_complexity Low_complexity 1 27 0 6 702 26 0 0 0 chr12 15420649 15420675 -105836855 + AT_rich Low_complexity Low_complexity 1 26 0 6 702 1563 152 132 12 chr12 15421320 15421654 -105835876 + ORR1C1 LTR MaLR 3 376 -2 6 702 225 329 30 30 chr12 15421846 15422015 -105835515 + L1_Mur1 LINE L1 1623 1791 -4095 6 702 598 97 40 16 chr12 15422348 15422474 -105835056 + (TAGA)n Simple_repeat Simple_repeat 3 131 0 6 702 540 0 0 0 chr12 15422833 15422893 -105834637 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 702 258 56 0 0 chr12 15422893 15422928 -105834602 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 702 663 123 0 0 chr12 15424087 15424157 -105833373 + (TTC)n Simple_repeat Simple_repeat 1 70 0 6 702 1536 22 0 0 chr12 15424157 15424337 -105833193 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 702 663 123 0 0 chr12 15424337 15424372 -105833158 + (TTC)n Simple_repeat Simple_repeat 2 36 0 6 702 672 301 95 42 chr12 15424373 15424751 -105832779 - Lx8 LINE L1 -60 7413 7016 6 702 300 338 102 0 chr12 15424753 15424910 -105832620 - MER57C2 LTR ERV1 -44 390 218 6 702 2060 40 113 0 chr12 15425043 15425318 -105832212 - L1_Mus1 LINE L1 -2 6565 6260 6 702 1496 58 0 0 chr12 15425318 15425507 -105832023 + L1_Mus1 LINE L1 5624 5812 -755 6 702 340 337 23 37 chr12 15425716 15425932 -105831598 + Lx9 LINE L1 7245 7457 -187 6 702 513 0 0 0 chr12 15425932 15425989 -105831541 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 702 654 308 129 9 chr12 15426151 15426469 -105831061 - Lx8 LINE L1 -7 7466 7111 6 702 459 297 27 16 chr12 15426520 15426705 -105830825 - Lx8 LINE L1 -437 7036 6850 6 702 899 275 176 16 chr12 15427736 15428180 -105829350 - Lx8 LINE L1 -10 7463 6949 6 702 330 308 61 8 chr12 15429285 15429416 -105828114 + L1M4 LINE L1 2796 2933 -3213 6 702 3626 42 18 20 chr12 15429573 15430030 -105827500 + L1Md_F3 LINE L1 6114 6569 -15 6 702 35306 36 0 0 chr12 15430228 15435691 -105821839 + L1Md_T LINE L1 30 5589 -297 6 702 8876 10 0 0 chr12 15435691 15436687 -105820843 + L1Md_T LINE L1 5590 6585 0 6 702 495 0 0 0 chr12 15437129 15437184 -105820346 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 702 1032 285 121 39 chr12 15437960 15438347 -105819183 - MTD LTR MaLR 0 419 1 6 702 27 0 0 0 chr12 15438542 15438569 -105818961 + AT_rich Low_complexity Low_complexity 1 27 0 6 702 5306 91 32 17 chr12 15438569 15439343 -105818187 - Lx3_Mus LINE L1 -8 7001 6216 6 702 324 317 101 40 chr12 15439456 15439604 -105817926 - MLT2B1 LTR ERVL -363 157 1 6 702 2467 140 29 3 chr12 15441037 15441423 -105816107 + RLTR23 LTR ERV1 9 404 -26 6 702 24 0 0 0 chr12 15442114 15442138 -105815392 + AT_rich Low_complexity Low_complexity 1 24 0 6 702 2936 187 21 69 chr12 15443601 15444314 -105813216 + RMER6C LTR ERVK 1 679 -11 6 702 279 0 0 0 chr12 15444353 15444384 -105813146 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 702 336 111 0 0 chr12 15444786 15444840 -105812690 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 6 702 476 320 8 8 chr12 15444904 15445033 -105812497 - RSINE1 SINE B4 -15 150 22 6 702 392 161 0 12 chr12 15445171 15445253 -105812277 + CT-rich Low_complexity Low_complexity 3 83 0 6 702 1638 73 91 8 chr12 15445628 15445688 -105811842 + MusHAL1 LINE L1 1604 1685 -1027 6 702 1091 36 14 0 chr12 15445688 15445827 -105811703 + (GAAA)n Simple_repeat Simple_repeat 4 144 0 6 702 1638 73 91 8 chr12 15445827 15446029 -105811501 + MusHAL1 LINE L1 1686 1888 -824 6 702 198 103 0 0 chr12 15446059 15446088 -105811442 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 6 702 2770 70 139 135 chr12 15446109 15446619 -105810911 + RLTR1B LTR ERV1 1 512 0 6 702 287 320 59 10 chr12 15447628 15447729 -105809801 - PB1D10 SINE Alu 0 117 12 6 702 1068 61 15 0 chr12 15447835 15447966 -105809564 + B1_Mm SINE Alu 2 134 -13 6 702 315 0 0 0 chr12 15447968 15448003 -105809527 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 702 5462 100 12 22 chr12 15448116 15448932 -105808598 - RLTR13C2 LTR ERVK 0 808 1 6 702 25 0 0 0 chr12 15449688 15449713 -105807817 + AT_rich Low_complexity Low_complexity 1 25 0 6 702 507 242 39 93 chr12 15449905 15450077 -105807453 + ORR1D2 LTR MaLR 1 170 -214 6 702 508 191 12 0 chr12 15450116 15450200 -105807330 - RLTR13D4 LTR ERVK -948 85 1 6 702 592 276 104 6 chr12 15450361 15450543 -105806987 + ORR1D2 LTR MaLR 152 351 -19 6 702 247 340 27 64 chr12 15450563 15450673 -105806857 + B1F SINE Alu 43 148 -1 6 702 932 90 14 0 chr12 15450688 15450832 -105806698 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 6 702 449 309 16 0 chr12 15451112 15451238 -105806292 + ID_B1 SINE B4 93 220 -4 6 702 539 359 46 42 chr12 15451757 15451941 -105805589 + B4A SINE B4 3 189 -103 6 702 4090 65 2 2 chr12 15451941 15452453 -105805077 - RLTR1B LTR ERV1 0 512 1 6 702 539 359 46 42 chr12 15452453 15452553 -105804977 + B4A SINE B4 190 288 -4 6 702 406 333 56 29 chr12 15452762 15453068 -105804462 + L1MC5 LINE L1 5460 5773 -2109 6 702 1136 79 6 17 chr12 15453220 15453401 -105804129 + (GAA)n Simple_repeat Simple_repeat 1 179 0 6 702 670 324 33 60 chr12 15453443 15453742 -105803788 + B4A SINE B4 1 291 -1 6 702 363 358 63 52 chr12 15453822 15454285 -105803245 + L1MC5 LINE L1 7029 7496 -465 6 702 933 275 173 22 chr12 15454376 15454740 -105802790 - MTD LTR MaLR 0 419 1 6 702 203 308 0 15 chr12 15454974 15455040 -105802490 + (TAA)n Simple_repeat Simple_repeat 3 67 0 6 702 260 307 8 34 chr12 15455040 15455158 -105802372 + Lx8 LINE L1 7357 7471 -2 6 702 192 125 0 0 chr12 15455421 15455453 -105802077 + (CAA)n Simple_repeat Simple_repeat 1 32 0 6 702 939 82 0 0 chr12 15455744 15455878 -105801652 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 6 702 579 62 0 0 chr12 15456870 15456950 -105800580 + (TC)n Simple_repeat Simple_repeat 2 81 0 6 702 2092 132 8 8 chr12 15457312 15457693 -105799837 - L1_Mur2 LINE L1 -1097 4780 4400 6 702 4640 90 23 2 chr12 15457693 15458338 -105799192 + L1_Mus4 LINE L1 5971 6629 -7 6 702 579 279 33 42 chr12 15458358 15458571 -105798959 + ID_B1 SINE B4 2 212 -12 6 702 21 0 0 0 chr12 15458571 15458592 -105798938 + AT_rich Low_complexity Low_complexity 1 21 0 6 702 26 0 0 0 chr12 15459347 15459373 -105798157 + AT_rich Low_complexity Low_complexity 1 26 0 6 702 315 0 0 0 chr12 15459398 15459433 -105798097 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 702 917 274 72 123 chr12 15459444 15459835 -105797695 - MTE2b LTR MaLR -8 371 1 6 702 3327 31 13 0 chr12 15461076 15461467 -105796063 - MTA_Mm LTR MaLR 0 396 1 6 702 6504 121 18 16 chr12 15461623 15462644 -105794886 - RLTR13D5 LTR ERVK 0 1023 1 7 702 261 290 0 0 chr12 15462644 15462706 -105794824 - ID4 SINE ID -21 62 1 7 702 2273 101 141 11 chr12 15463270 15463632 -105793898 + RLTR9E LTR ERVK 1 409 0 7 702 22 35 0 0 chr12 15463992 15464021 -105793509 + AT_rich Low_complexity Low_complexity 1 29 0 7 702 336 324 0 18 chr12 15464348 15464450 -105793080 - ORR1E LTR MaLR -2 377 278 7 702 1756 138 4 0 chr12 15464450 15464711 -105792819 + ORR1A2 LTR MaLR 1 262 -65 7 702 768 129 121 7 chr12 15464712 15464853 -105792677 + Lx2B LINE L1 6367 6523 -477 7 702 2136 216 42 42 chr12 15464859 15465361 -105792169 + RLTR17 LTR ERVK 105 578 -114 7 702 2578 176 11 4 chr12 15465387 15465850 -105791680 + Lx2B LINE L1 6516 6981 -19 7 702 35 0 0 0 chr12 15465854 15465889 -105791641 + AT_rich Low_complexity Low_complexity 1 35 0 7 702 660 216 0 0 chr12 15465889 15466037 -105791493 + GA-rich Low_complexity Low_complexity 2 149 0 7 702 403 343 62 71 chr12 15466038 15466346 -105791184 - ORR1E LTR MaLR -52 307 3 7 702 284 306 91 10 chr12 15466394 15466493 -105791037 - PB1D10 SINE Alu -9 108 2 7 703 742 97 0 59 chr12 15467104 15467257 -105790273 + CT-rich Low_complexity Low_complexity 1 144 0 7 703 678 276 52 37 chr12 15467586 15467857 -105789673 - B4A SINE B4 -16 276 2 7 703 311 248 67 140 chr12 15468894 15469239 -105788291 - L1_Rod LINE L1 -502 5672 5287 7 703 1380 70 21 0 chr12 15469386 15469573 -105787957 + B2_Mm1t SINE B2 1 191 -2 7 703 306 125 0 0 chr12 15469574 15469622 -105787908 + (A)n Simple_repeat Simple_repeat 1 48 0 7 703 22 80 0 0 chr12 15470193 15470243 -105787287 + AT_rich Low_complexity Low_complexity 1 50 0 7 703 441 0 0 0 chr12 15470483 15470532 -105786998 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 703 3377 116 1 22 chr12 15470639 15471264 -105786266 + L1VL4 LINE L1 414 1021 -2538 7 703 9032 147 33 8 chr12 15471272 15474019 -105783511 + Lx2 LINE L1 4184 6995 -2 7 703 468 0 0 0 chr12 15474048 15474100 -105783430 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 703 1873 121 30 67 chr12 15474434 15474763 -105782767 + ORR1A3 LTR MaLR 1 317 -9 7 703 377 233 0 16 chr12 15474835 15474957 -105782573 + G-rich Low_complexity Low_complexity 1 120 0 7 703 284 229 0 32 chr12 15475040 15475103 -105782427 - MTC LTR MaLR -360 61 1 7 703 335 244 4 37 chr12 15475104 15475212 -105782318 - MTC-int LTR MaLR -4 1254 1166 7 703 588 184 19 13 chr12 15475231 15475385 -105782145 + Lx9 LINE L1 7487 7641 -3 7 703 299 25 25 0 chr12 15475744 15475784 -105781746 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 703 746 98 0 9 chr12 15476293 15476406 -105781124 - Lx3_Mus LINE L1 -1729 4157 4046 7 703 11276 82 23 6 chr12 15476400 15478198 -105779332 + Lx3_Mus LINE L1 4213 6034 -975 7 703 599 25 0 37 chr12 15478198 15478280 -105779250 + (GGGA)n Simple_repeat Simple_repeat 1 79 0 7 703 8686 112 20 22 chr12 15478280 15479245 -105778285 + Lx3_Mus LINE L1 6035 7001 -8 7 703 718 303 63 47 chr12 15479267 15479631 -105777899 - ORR1D2 LTR MaLR 0 370 1 7 703 543 294 82 22 chr12 15480001 15480185 -105777345 - MLT1A0 LTR MaLR -9 356 162 7 703 413 36 18 0 chr12 15480588 15480643 -105776887 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 703 453 36 0 0 chr12 15480962 15481017 -105776513 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 703 298 70 35 17 chr12 15481018 15481076 -105776454 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 7 703 198 0 0 0 chr12 15481355 15481377 -105776153 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 7 703 6102 187 54 28 chr12 15481930 15483638 -105773892 - Lx5 LINE L1 -2 7048 5248 7 703 918 331 31 28 chr12 15483734 15484088 -105773442 - MTE2b LTR MaLR -4 375 21 7 703 269 236 60 15 chr12 15485106 15485204 -105772326 + MLT1A0 LTR MaLR 248 397 -11 7 703 23 0 0 0 chr12 15485717 15485740 -105771790 + AT_rich Low_complexity Low_complexity 1 23 0 7 703 492 299 65 96 chr12 15485765 15485958 -105771572 + L1MA5 LINE L1 5330 5513 -787 7 703 1120 70 14 0 chr12 15485958 15486101 -105771429 + B1_Mm SINE Alu 3 147 0 7 703 492 299 65 96 chr12 15486101 15486205 -105771325 + L1MA5 LINE L1 5514 5606 -694 7 703 976 136 0 0 chr12 15486205 15486352 -105771178 + B1_Mus1 SINE Alu 2 148 0 7 703 517 280 100 27 chr12 15486352 15486700 -105770830 + L1MA5 LINE L1 5597 5956 -344 7 703 494 325 17 0 chr12 15486713 15486925 -105770605 + Lx9 LINE L1 7108 7441 -203 7 703 275 230 11 0 chr12 15486928 15487015 -105770515 + (CA)n Simple_repeat Simple_repeat 1 88 0 7 703 314 253 41 31 chr12 15487037 15487135 -105770395 + L1MCa LINE L1 1901 1999 -4509 7 703 344 77 19 0 chr12 15487531 15487583 -105769947 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 703 254 29 0 28 chr12 15487644 15487680 -105769850 + (TTA)n Simple_repeat Simple_repeat 2 36 0 7 703 31753 90 16 14 chr12 15487778 15493476 -105764054 + L1Md_F LINE L1 31 5689 -194 7 703 248 102 0 20 chr12 15493683 15493733 -105763797 + (TTTTTG)n Simple_repeat Simple_repeat 1 49 0 7 703 728 349 26 66 chr12 15494227 15494577 -105762953 + ORR1D-int LTR MaLR 572 907 -463 7 703 30 59 0 0 chr12 15494616 15494667 -105762863 + AT_rich Low_complexity Low_complexity 1 51 0 7 703 404 248 96 29 chr12 15494720 15494735 -105762795 + B4 SINE B4 69 90 -202 7 703 754 181 24 0 chr12 15494735 15494862 -105762668 + B1_Mur4 SINE Alu 1 130 -20 7 703 362 90 0 29 chr12 15494865 15494934 -105762596 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 7 703 2412 251 18 8 chr12 15495082 15495693 -105761837 - Lx9 LINE L1 -694 6950 6334 7 703 1267 217 12 53 chr12 15495705 15496026 -105761504 + Lx9 LINE L1 6939 7246 -398 7 703 632 232 183 54 chr12 15496099 15496340 -105761190 + RLTR10A LTR ERVK 140 411 0 7 703 1264 242 30 25 chr12 15496341 15496709 -105760821 + Lx9 LINE L1 7240 7609 -35 7 703 418 329 63 40 chr12 15496744 15497219 -105760311 + L1MA4A LINE L1 5417 5902 -401 7 703 232 386 132 0 chr12 15497449 15497563 -105759967 + B1F1 SINE Alu 10 138 -11 7 703 414 57 0 0 chr12 15497568 15497621 -105759909 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 703 662 181 7 0 chr12 15498013 15498157 -105759373 + (TA)n Simple_repeat Simple_repeat 2 146 0 7 703 229 220 0 33 chr12 15498584 15498645 -105758885 - L4 LINE RTE -1762 267 209 7 703 547 60 29 29 chr12 15498714 15498817 -105758713 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 7 703 524 77 13 0 chr12 15498831 15498909 -105758621 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 703 23 33 0 0 chr12 15499477 15499507 -105758023 + AT_rich Low_complexity Low_complexity 1 30 0 7 703 608 254 24 34 chr12 15499533 15499741 -105757789 - Lx9 LINE L1 -212 7432 7227 7 703 610 239 64 59 chr12 15499764 15500000 -105757530 + Lx9 LINE L1 6867 7103 -541 7 703 334 214 0 28 chr12 15500033 15500105 -105757425 + Lx9 LINE L1 7143 7212 -432 1 703 243 103 0 0 chr12 15500126 15500165 -105757365 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 703 355 332 44 66 chr12 15500273 15500627 -105756903 + MLT1A LTR MaLR 1 371 -3 3 703 257 51 26 0 chr12 15500809 15500848 -105756682 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 4 703 1773 145 30 3 chr12 15501089 15501386 -105756144 - Lx4A LINE L1 -1 7057 6753 5 703 23 54 0 0 chr12 15503325 15503362 -105754168 + AT_rich Low_complexity Low_complexity 1 37 0 6 703 186 262 96 103 chr12 15503756 15503892 -105753638 + L4 LINE RTE 395 529 -1500 7 703 1307 253 78 29 chr12 15504618 15504879 -105752651 + MTD LTR MaLR 2 275 -144 8 703 3191 32 42 0 chr12 15504879 15505259 -105752271 - MTA_Mm LTR MaLR 0 396 1 9 703 1307 253 78 29 chr12 15505259 15505380 -105752150 + MTD LTR MaLR 276 403 -16 8 703 221 222 13 65 chr12 15505456 15505533 -105751997 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 1 703 706 325 33 22 chr12 15505564 15505835 -105751695 - B4A SINE B4 -18 274 1 1 703 284 102 20 0 chr12 15506775 15506824 -105750706 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 703 272 330 18 36 chr12 15508036 15508146 -105749384 + MIRb SINE MIR 97 204 -64 1 703 337 237 93 0 chr12 15508298 15508416 -105749114 - L1MA6 LINE L1 -47 6253 6125 1 703 5559 92 18 1 chr12 15508427 15509208 -105748322 - L1_Mus3 LINE L1 0 6638 5845 1 703 1709 219 64 75 chr12 15509208 15509663 -105747867 + RLTR25A LTR ERVK 74 523 -580 1 703 439 195 277 0 chr12 15509586 15509748 -105747782 + ORR1A3-int LTR MaLR 499 705 -1258 1 703 472 149 0 0 chr12 15509690 15509764 -105747766 + MT2B LTR ERVL 35 108 -493 1 703 459 281 76 5 chr12 15509934 15510145 -105747385 + L1M2 LINE L1 4887 5112 -1031 1 703 494 31 0 15 chr12 15510728 15510793 -105746737 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 703 3245 45 0 2 chr12 15511373 15511770 -105745760 - L1Md_T LINE L1 -1 6581 6186 2 703 641 294 157 23 chr12 15512137 15512488 -105745042 + MLT1C LTR MaLR 70 467 0 2 703 261 281 29 63 chr12 15513380 15513499 -105744031 - Lx8 LINE L1 -3 7470 7352 2 703 769 259 24 24 chr12 15513499 15513709 -105743821 - B3 SINE B2 -5 211 2 2 703 261 281 29 63 chr12 15513709 15513764 -105743766 - Lx8 LINE L1 -122 7351 7303 2 703 201 39 0 0 chr12 15514156 15514182 -105743348 + (T)n Simple_repeat Simple_repeat 1 26 0 2 703 431 294 48 84 chr12 15514842 15515009 -105742521 + B4A SINE B4 15 175 -117 2 703 180 77 0 0 chr12 15515026 15515052 -105742478 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 2 703 261 196 0 0 chr12 15516054 15516110 -105741420 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 703 1243 285 116 15 chr12 15516230 15516704 -105740826 - Lx8 LINE L1 -238 7235 6714 2 703 369 0 0 0 chr12 15517290 15517331 -105740199 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 703 208 102 20 20 chr12 15517387 15517437 -105740093 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 3 703 1149 62 7 0 chr12 15517439 15517585 -105739945 - B1_Mm SINE Alu 0 147 1 3 703 675 347 29 7 chr12 15517696 15517975 -105739555 + B4 SINE B4 2 286 -6 3 703 203 259 0 36 chr12 15517981 15518037 -105739493 + (CATA)n Simple_repeat Simple_repeat 3 56 0 3 703 23 54 0 0 chr12 15518723 15518760 -105738770 + AT_rich Low_complexity Low_complexity 1 37 0 3 703 25 31 0 0 chr12 15519035 15519067 -105738463 + AT_rich Low_complexity Low_complexity 1 32 0 3 703 7874 149 29 39 chr12 15519558 15520599 -105736931 - Lx4A LINE L1 -57 7001 6035 3 703 1119 62 7 20 chr12 15520599 15520748 -105736782 - B1_Mus2 SINE Alu 0 147 1 3 703 13992 117 15 11 chr12 15520748 15522136 -105735394 - Lx4A LINE L1 -1024 6034 4639 3 703 378 94 0 0 chr12 15522136 15522200 -105735330 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 703 13992 114 14 8 chr12 15522200 15523239 -105734291 - Lx4A LINE L1 -1239 4638 3586 3 703 2516 101 58 12 chr12 15523236 15523666 -105733864 + L1_Mur2 LINE L1 2446 2895 -2982 3 703 3722 119 44 5 chr12 15523662 15524600 -105732930 - Lx4A LINE L1 -3981 1896 932 3 703 180 0 0 0 chr12 15525774 15525794 -105731736 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 703 1236 176 16 12 chr12 15526236 15526442 -105731088 + MTC LTR MaLR 1 207 -214 4 703 729 199 15 0 chr12 15526442 15526578 -105730952 + B1_Mur4 SINE Alu 2 139 -11 4 703 186 43 0 0 chr12 15526578 15526601 -105730929 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 703 1149 192 24 5 chr12 15526602 15526811 -105730719 + MTC LTR MaLR 201 413 -8 4 703 26 0 0 0 chr12 15526848 15526874 -105730656 + AT_rich Low_complexity Low_complexity 1 26 0 4 703 633 299 60 40 chr12 15526904 15527252 -105730278 - Lx8 LINE L1 -1 7472 7118 4 703 207 0 0 0 chr12 15529387 15529410 -105728120 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 703 423 0 0 0 chr12 15529411 15529458 -105728072 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 703 2047 176 43 34 chr12 15529813 15530230 -105727300 + MTC LTR MaLR 1 421 0 4 703 1283 244 6 60 chr12 15530230 15530562 -105726968 + MTC-int LTR MaLR 1 314 -944 4 703 1268 252 19 22 chr12 15530562 15530886 -105726644 + Lx6 LINE L1 7075 7397 -63 4 703 2956 222 149 29 chr12 15530890 15531674 -105725856 + MTC-int LTR MaLR 243 1079 -179 4 703 688 272 17 6 chr12 15531680 15531861 -105725669 + Lx6 LINE L1 7142 7324 -136 5 703 421 114 8 66 chr12 15531861 15531983 -105725547 + (TTTG)n Simple_repeat Simple_repeat 1 115 0 5 703 1194 69 0 0 chr12 15531984 15532129 -105725401 - B1_Mus1 SINE Alu -2 146 2 5 703 902 102 30 79 chr12 15532229 15532431 -105725099 + MTC-int LTR MaLR 1058 1249 -9 4 703 1865 198 77 3 chr12 15532435 15532825 -105724705 + MTC LTR MaLR 3 421 0 4 703 270 265 12 0 chr12 15534464 15534547 -105722983 + L1_Mur3 LINE L1 5351 5434 -446 5 703 612 332 41 106 chr12 15534656 15535023 -105722507 + MER47B DNA MER2_type 6 348 -70 5 703 542 290 151 15 chr12 15535038 15535430 -105722100 + L1MA5 LINE L1 5486 5930 -370 5 703 1284 224 99 57 chr12 15535519 15535861 -105721669 - MTD LTR MaLR 0 419 54 5 703 1569 27 32 0 chr12 15535861 15536047 -105721483 + B2_Mm1t SINE B2 2 193 0 5 703 1284 224 99 57 chr12 15536047 15536106 -105721424 - MTD LTR MaLR -366 53 1 5 703 386 341 180 39 chr12 15536406 15536894 -105720636 - L1ME2 LINE L1 -6 6158 5602 5 703 180 0 0 0 chr12 15537567 15537587 -105719943 + (T)n Simple_repeat Simple_repeat 1 20 0 5 703 360 0 0 0 chr12 15538687 15538727 -105718803 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 703 220 237 16 33 chr12 15538796 15538857 -105718673 + GA-rich Low_complexity Low_complexity 1 60 0 6 703 789 171 0 0 chr12 15540558 15540704 -105716826 + GA-rich Low_complexity Low_complexity 2 147 0 6 703 501 317 94 31 chr12 15541389 15541643 -105715887 - B4A SINE B4 -22 270 1 6 703 2085 31 0 15 chr12 15542408 15542673 -105714857 - L1_Mm LINE L1 -255 5628 5368 6 703 303 20 20 0 chr12 15542673 15542724 -105714806 + L1Md_F2 LINE L1 6531 6582 0 6 703 420 20 0 0 chr12 15544423 15544472 -105713058 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 703 581 248 0 8 chr12 15544472 15544594 -105712936 - ORR1E LTR MaLR -237 122 2 6 703 674 212 190 27 chr12 15544711 15544895 -105712635 - B3 SINE B2 0 216 3 6 703 819 282 24 24 chr12 15546306 15546593 -105710937 - RCHARR1 DNA MER1_type 0 974 688 6 703 5527 88 8 1 chr12 15546597 15547360 -105710170 - L1_Mus3 LINE L1 -1 6637 5870 7 703 560 254 116 85 chr12 15547362 15547586 -105709944 - RCHARR1 DNA MER1_type -743 231 1 6 703 297 0 0 0 chr12 15548711 15548744 -105708786 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 7 703 247 47 14 86 chr12 15548997 15549067 -105708463 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 7 703 567 165 122 0 chr12 15550309 15550424 -105707106 + URR1B DNA MER1_type 97 225 0 7 703 431 18 18 0 chr12 15551245 15551301 -105706229 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 703 1055 81 0 0 chr12 15551819 15551955 -105705575 + B1_Mus2 SINE Alu 2 137 -10 7 703 261 57 0 0 chr12 15551955 15551990 -105705540 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 703 3209 53 5 0 chr12 15553044 15553438 -105704092 + MTA_Mm LTR MaLR 1 396 0 7 703 361 357 70 62 chr12 15553556 15553798 -105703732 - MLT1A0 LTR MaLR -116 249 6 7 703 247 326 124 140 chr12 15553796 15554053 -105703477 + MLT1J2 LTR MaLR 25 277 -171 7 703 234 0 0 0 chr12 15554230 15554256 -105703274 + (A)n Simple_repeat Simple_repeat 1 26 0 8 703 491 307 165 49 chr12 15554562 15555000 -105702530 - BGLII_B LTR ERVK -19 509 1 8 703 798 236 13 89 chr12 15555747 15555779 -105701751 + URR1B DNA MER1_type 5 35 -190 8 703 195 42 0 0 chr12 15555779 15555803 -105701727 + (G)n Simple_repeat Simple_repeat 1 24 0 8 703 798 236 13 89 chr12 15555803 15556007 -105701523 + URR1B DNA MER1_type 36 223 -2 8 703 439 258 52 10 chr12 15556333 15556525 -105701005 + L1MA7 LINE L1 6066 6265 -26 8 703 241 260 41 0 chr12 15556935 15557008 -105700522 + MER20B DNA MER1_type 267 342 -441 8 703 183 156 0 0 chr12 15557239 15557271 -105700259 + (TATG)n Simple_repeat Simple_repeat 1 32 0 8 703 329 272 12 24 chr12 15557376 15557459 -105700071 + B4A SINE B4 205 286 -6 8 703 201 255 21 0 chr12 15557490 15557537 -105699993 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 703 2089 66 48 3 chr12 15557623 15557912 -105699618 + L1Md_F2 LINE L1 6269 6570 -12 8 703 260 184 143 0 chr12 15557912 15558010 -105699520 + Lx9 LINE L1 7533 7644 0 9 703 411 336 109 0 chr12 15558862 15558903 -105698627 + ORR1E LTR MaLR 1 54 -305 9 703 222 37 0 0 chr12 15558903 15558930 -105698600 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 703 411 336 109 0 chr12 15558930 15559016 -105698514 + ORR1E LTR MaLR 55 141 -218 9 703 386 312 98 56 chr12 15559208 15559421 -105698109 + MLT1A0 LTR MaLR 56 278 -87 9 703 1357 135 13 13 chr12 15559421 15559646 -105697884 + URR1A DNA MER1_type 1 225 -1 9 703 386 312 98 56 chr12 15559646 15559717 -105697813 + MLT1A0 LTR MaLR 279 352 -13 9 703 279 0 0 0 chr12 15560184 15560215 -105697315 + (T)n Simple_repeat Simple_repeat 1 31 0 9 703 858 281 60 96 chr12 15560807 15561275 -105696255 - RLTR12B LTR ERVK -31 497 47 9 703 30 27 0 0 chr12 15561754 15561791 -105695739 + AT_rich Low_complexity Low_complexity 1 37 0 9 703 283 277 21 11 chr12 15563233 15563328 -105694202 - MLT1J1 LTR MaLR -12 432 337 9 703 724 344 106 44 chr12 15563724 15564272 -105693258 - MER20B DNA MER1_type -166 617 36 9 703 209 311 0 0 chr12 15564272 15564333 -105693197 + CT-rich Low_complexity Low_complexity 3 63 0 1 703 291 240 104 0 chr12 15564336 15564432 -105693098 - L1MD3 LINE L1 -935 6850 6745 1 703 328 71 36 0 chr12 15564640 15564696 -105692834 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 703 230 309 12 0 chr12 15564822 15564903 -105692627 - L1MD3 LINE L1 -1282 6503 6422 1 703 324 0 0 0 chr12 15565175 15565211 -105692319 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 703 306 368 30 9 chr12 15565332 15565669 -105691861 - L1MD3 LINE L1 -2125 5870 5527 1 703 619 331 60 0 chr12 15565912 15566096 -105691434 + ID_B1 SINE B4 2 196 -28 1 703 237 65 0 0 chr12 15566377 15566408 -105691122 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1 703 212 326 54 11 chr12 15566956 15567049 -105690481 + MIRc SINE MIR 20 116 -152 1 703 401 236 8 102 chr12 15567480 15567598 -105689932 - PB1D10 SINE Alu 0 117 11 1 703 754 279 40 6 chr12 15567497 15567670 -105689860 - ID_B1 SINE B4 -33 191 13 1 703 324 351 0 18 chr12 15567749 15567862 -105689668 + PB1D7 SINE Alu 2 112 -8 1 703 25 31 0 0 chr12 15567862 15567894 -105689636 + AT_rich Low_complexity Low_complexity 1 32 0 1 703 494 349 42 11 chr12 15568569 15568760 -105688770 - MLT1D LTR MaLR -302 203 7 1 703 228 192 111 99 chr12 15570740 15570821 -105686709 + Cheshire DNA MER1_type 1423 1504 -916 1 703 587 299 67 27 chr12 15571163 15571353 -105686177 + B3A SINE B2 1 194 -1 1 703 591 280 73 29 chr12 15574311 15574517 -105683013 - B3 SINE B2 -1 215 1 1 703 217 302 58 0 chr12 15574682 15574768 -105682762 - MIR SINE MIR -117 145 55 1 703 692 292 37 56 chr12 15575206 15575420 -105682110 + B3A SINE B2 7 216 0 1 703 942 226 14 14 chr12 15575554 15575761 -105681769 - B3 SINE B2 0 216 10 1 703 298 159 12 179 chr12 15576860 15576944 -105680586 - PB1D10 SINE Alu -8 109 40 1 703 201 250 0 15 chr12 15577167 15577232 -105680298 + T-rich Low_complexity Low_complexity 3 66 0 1 703 345 47 0 0 chr12 15577471 15577514 -105680016 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 703 336 273 23 15 chr12 15578447 15578577 -105678953 + L1M4 LINE L1 612 742 -5800 1 703 254 233 0 40 chr12 15578762 15578838 -105678692 + GA-rich Low_complexity Low_complexity 5 77 0 1 703 430 288 23 29 chr12 15579135 15579310 -105678220 + (TGG)n Simple_repeat Simple_repeat 3 176 0 1 703 306 0 0 0 chr12 15579376 15579410 -105678120 + (CACAA)n Simple_repeat Simple_repeat 2 35 0 1 703 192 360 55 17 chr12 15579612 15579750 -105677780 + MIRc SINE MIR 40 187 -81 1 703 441 213 11 57 chr12 15581489 15581774 -105675756 + (CA)n Simple_repeat Simple_repeat 1 271 0 1 703 2757 219 226 23 chr12 15582002 15582424 -105675106 - RMER17B LTR ERVK 0 958 424 1 703 1151 0 18 25 chr12 15582424 15582587 -105674943 + (GAGAA)n Simple_repeat Simple_repeat 5 166 0 1 703 2757 219 226 23 chr12 15582587 15582960 -105674570 - RMER17B LTR ERVK -535 423 2 1 703 716 172 7 0 chr12 15582972 15583117 -105674413 + CT-rich Low_complexity Low_complexity 3 148 0 1 703 180 0 0 0 chr12 15583512 15583532 -105673998 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 703 687 238 71 15 chr12 15583641 15583837 -105673693 + B3 SINE B2 2 208 -8 1 703 496 355 133 22 chr12 15584187 15584599 -105672931 + MT2A LTR ERVL 1 458 -75 1 703 185 0 40 0 chr12 15584643 15584668 -105672862 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 703 184 196 39 19 chr12 15584884 15584936 -105672594 + L4 LINE RTE 772 824 -1205 1 703 330 325 56 25 chr12 15585257 15585418 -105672112 + L1M5 LINE L1 5054 5219 -927 1 703 436 326 79 45 chr12 15585843 15586045 -105671485 + ID_B1 SINE B4 4 212 -12 1 703 362 339 27 0 chr12 15586370 15586482 -105671048 + MLT1J LTR MaLR 94 208 -304 1 703 429 20 0 0 chr12 15587262 15587312 -105670218 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 703 210 174 0 0 chr12 15587846 15587892 -105669638 + GA-rich Low_complexity Low_complexity 1 46 0 1 703 24 53 0 0 chr12 15589132 15589170 -105668360 + AT_rich Low_complexity Low_complexity 1 38 0 1 703 239 346 8 119 chr12 15590059 15590177 -105667353 - PB1D7 SINE Alu -5 115 11 1 703 784 304 58 4 chr12 15591298 15591523 -105666007 - MTE2b LTR MaLR -125 254 18 1 703 21 0 0 0 chr12 15592164 15592185 -105665345 + AT_rich Low_complexity Low_complexity 1 21 0 1 703 209 120 40 0 chr12 15592276 15592326 -105665204 + (CAGA)n Simple_repeat Simple_repeat 2 53 0 1 703 203 299 23 11 chr12 15593924 15594012 -105663518 + GA-rich Low_complexity Low_complexity 2 90 0 1 703 378 0 0 0 chr12 15594210 15594252 -105663278 + (CAGT)n Simple_repeat Simple_repeat 1 42 0 1 703 4317 95 68 2 chr12 15594443 15595087 -105662443 - L1_Mus3 LINE L1 -5 6633 5947 1 703 22 35 0 0 chr12 15595122 15595151 -105662379 + AT_rich Low_complexity Low_complexity 1 29 0 1 703 21 0 0 0 chr12 15596656 15596677 -105660853 + AT_rich Low_complexity Low_complexity 1 21 0 1 703 363 359 0 20 chr12 15596917 15597065 -105660465 + B1F1 SINE Alu 3 147 -2 1 703 250 67 44 0 chr12 15597172 15597217 -105660313 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 703 336 309 0 24 chr12 15597332 15597458 -105660072 + GA-rich Low_complexity Low_complexity 3 125 0 1 87 627 252 0 0 chr12 15597557 15597684 -105659846 + B1F SINE Alu 1 127 -22 1 704 286 346 49 30 chr12 15598150 15598579 -105658951 + L1M5 LINE L1 4571 5007 -1139 1 704 246 62 0 0 chr12 15598934 15598966 -105658564 + (TTAG)n Simple_repeat Simple_repeat 2 33 0 1 704 324 0 0 0 chr12 15600503 15600539 -105656991 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 704 269 322 179 54 chr12 15600649 15600833 -105656697 - MER20 DNA MER1_type -3 216 10 1 704 855 0 0 0 chr12 15602002 15602097 -105655433 + (TCTCCC)n Simple_repeat Simple_repeat 2 96 0 1 704 465 281 7 0 chr12 15602161 15602273 -105655257 - PB1D10 SINE Alu -32 117 1 1 704 571 279 37 37 chr12 15602319 15602509 -105655021 - B3 SINE B2 0 216 27 1 704 1293 130 14 0 chr12 15602522 15602729 -105654801 - Lx2 LINE L1 -13 6984 6775 1 704 6759 109 13 18 chr12 15602730 15602863 -105654667 - Lx2 LINE L1 -355 6642 6512 1 704 3350 28 2 20 chr12 15602863 15603266 -105654264 + MTA_Mm LTR MaLR 1 396 0 1 704 6759 111 12 19 chr12 15603266 15604242 -105653288 - Lx2 LINE L1 -486 6511 5538 1 704 3122 82 33 2 chr12 15604602 15605056 -105652474 - Lx3_Mus LINE L1 -37 6972 6505 1 704 467 311 15 0 chr12 15605056 15605188 -105652342 - B1_Mur1 SINE Alu -13 136 3 1 704 516 288 42 0 chr12 15605235 15605353 -105652177 - RSINE1 SINE B4 -38 127 5 1 704 260 328 0 0 chr12 15605374 15605432 -105652098 - B4A SINE B4 -145 147 90 1 704 2497 95 3 65 chr12 15605853 15606236 -105651294 - RLTR10D LTR ERVK 0 359 1 1 704 1089 96 7 0 chr12 15607151 15607297 -105650233 + B1_Mus1 SINE Alu 2 148 0 1 704 765 0 0 0 chr12 15607312 15607397 -105650133 + (GGAAA)n Simple_repeat Simple_repeat 3 87 0 1 704 348 271 82 88 chr12 15608119 15608313 -105649217 + B3A SINE B2 1 193 -2 1 704 22 0 0 0 chr12 15608381 15608403 -105649127 + AT_rich Low_complexity Low_complexity 1 22 0 1 704 327 284 0 0 chr12 15608568 15608723 -105648807 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 704 818 109 0 8 chr12 15608867 15608996 -105648534 + (GGGA)n Simple_repeat Simple_repeat 2 129 0 1 704 471 35 0 0 chr12 15610003 15610060 -105647470 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 704 435 38 0 0 chr12 15610139 15610192 -105647338 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 704 541 336 5 19 chr12 15611363 15611578 -105645952 - ID_B1 SINE B4 -12 212 1 1 704 317 332 171 36 chr12 15611830 15612105 -105645425 + MLT1E2 LTR MaLR 311 622 -5 1 704 365 250 247 35 chr12 15612367 15612537 -105644993 - B3 SINE B2 -6 210 5 1 704 208 314 92 37 chr12 15613385 15613494 -105644036 + MIRm SINE MIR 48 162 -114 1 704 363 44 0 0 chr12 15614718 15614763 -105642767 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 1 704 878 90 0 7 chr12 15615208 15615343 -105642187 + (TC)n Simple_repeat Simple_repeat 1 134 0 1 704 321 326 87 43 chr12 15615347 15615485 -105642045 - HAL1-3A_ME LINE L1 -421 2437 2294 1 704 222 236 0 0 chr12 15615488 15615543 -105641987 + CT-rich Low_complexity Low_complexity 1 55 0 1 704 249 329 0 0 chr12 15617024 15617106 -105640424 + MTE2b LTR MaLR 259 340 -39 1 704 544 323 0 0 chr12 15617474 15617607 -105639923 + RSINE1 SINE B4 3 135 -30 1 704 297 0 0 0 chr12 15617609 15617642 -105639888 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 704 22 0 0 0 chr12 15617656 15617678 -105639852 + AT_rich Low_complexity Low_complexity 1 22 0 1 704 243 170 0 0 chr12 15618304 15618351 -105639179 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 704 667 309 59 33 chr12 15618356 15618646 -105638884 - B4 SINE B4 -2 290 11 1 704 340 286 143 0 chr12 15619082 15619208 -105638322 - MLT1L LTR MaLR -61 549 406 1 704 22 0 0 0 chr12 15619596 15619618 -105637912 + AT_rich Low_complexity Low_complexity 1 22 0 1 704 788 80 9 0 chr12 15619779 15619892 -105637638 + (TTC)n Simple_repeat Simple_repeat 1 114 0 1 704 474 282 8 8 chr12 15621583 15621701 -105635829 + RCHARR1 DNA MER1_type 7 124 -850 1 704 254 310 7 134 chr12 15621704 15621853 -105635677 + B2_Mm2 SINE B2 31 160 -35 1 704 1931 245 151 22 chr12 15621877 15622519 -105635011 + RCHARR1 DNA MER1_type 120 844 -130 1 704 398 320 67 104 chr12 15625225 15625601 -105631929 + ORR1D2 LTR MaLR 9 370 0 1 704 393 326 126 55 chr12 15626771 15626953 -105630577 + B3A SINE B2 4 198 0 1 704 38817 30 0 0 chr12 15628991 15635454 -105622076 - L1Md_T LINE L1 0 6585 26 1 704 567 202 0 0 chr12 15635827 15635951 -105621579 + (TA)n Simple_repeat Simple_repeat 2 125 0 1 704 193 381 42 17 chr12 15636756 15636876 -105620654 - MIRb SINE MIR -78 190 68 1 704 449 104 13 0 chr12 15637453 15637530 -105620000 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 2 704 560 119 25 8 chr12 15637564 15637683 -105619847 + (TAGA)n Simple_repeat Simple_repeat 3 123 0 2 704 481 360 0 0 chr12 15638100 15638239 -105619291 + B1F2 SINE Alu 6 144 -5 2 704 507 207 0 0 chr12 15638426 15638566 -105618964 + GA-rich Low_complexity Low_complexity 2 141 0 2 704 834 221 9 162 chr12 15639508 15639730 -105617800 + B3A SINE B2 8 197 -1 2 704 905 64 48 0 chr12 15640607 15640732 -105616798 + L1_Mus1 LINE L1 6437 6567 0 2 704 363 304 91 16 chr12 15641374 15641509 -105616021 + B1_Mur1 SINE Alu 5 148 -1 2 704 300 272 105 25 chr12 15641515 15641677 -105615853 + L1MD LINE L1 5263 5437 -922 2 704 420 20 0 0 chr12 15641882 15641931 -105615599 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 704 552 264 124 2 chr12 15642142 15642334 -105615196 - B3A SINE B2 0 216 2 2 704 270 0 0 0 chr12 15642426 15642456 -105615074 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 704 477 318 69 96 chr12 15642876 15643210 -105614320 - MTE2a LTR MaLR -54 325 1 2 704 349 345 43 116 chr12 15644313 15644546 -105612984 + MTEa LTR MaLR 3 218 -161 2 704 379 317 10 0 chr12 15644539 15644643 -105612887 + MT2A LTR ERVL 269 373 -160 2 704 833 254 0 57 chr12 15645475 15645684 -105611846 + B3A SINE B2 1 197 -1 2 704 905 27 6 0 chr12 15645738 15645854 -105611676 + B1_Mus1 SINE Alu 19 139 -9 2 704 207 0 0 0 chr12 15645854 15645877 -105611653 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 704 238 340 103 14 chr12 15645941 15646087 -105611443 - MIR SINE MIR -94 168 10 2 704 22 35 0 0 chr12 15647727 15647756 -105609774 + AT_rich Low_complexity Low_complexity 1 29 0 2 704 269 352 29 0 chr12 15647933 15648038 -105609492 - ORR1E LTR MaLR -242 117 10 2 704 227 235 35 23 chr12 15648106 15648193 -105609337 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 2 704 243 103 0 0 chr12 15648199 15648238 -105609292 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 704 250 282 272 49 chr12 15648797 15649043 -105608487 - MLT1B LTR MaLR -70 320 20 2 704 641 291 67 116 chr12 15649212 15649558 -105607972 - MTEa LTR MaLR -2 377 49 2 704 411 21 0 0 chr12 15650291 15650339 -105607191 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 704 441 0 0 0 chr12 15650339 15650387 -105607143 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 704 4336 63 2 22 chr12 15651453 15651992 -105605538 + L1_Mus2 LINE L1 6039 6566 0 2 704 1237 254 52 35 chr12 15652044 15652285 -105605245 + MTEb LTR MaLR 23 274 -105 2 704 203 0 37 0 chr12 15652285 15652312 -105605218 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 2 704 1237 254 52 35 chr12 15652312 15652416 -105605114 + MTEb LTR MaLR 275 374 -5 2 704 24 0 0 0 chr12 15652980 15653004 -105604526 + AT_rich Low_complexity Low_complexity 1 24 0 2 704 788 68 30 0 chr12 15653801 15653934 -105603596 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 2 704 204 214 0 0 chr12 15653995 15654037 -105603493 + (CATA)n Simple_repeat Simple_repeat 4 45 0 2 704 1190 302 35 6 chr12 15655762 15656078 -105601452 - ORR1D2 LTR MaLR 0 370 46 2 704 441 158 30 0 chr12 15656256 15656357 -105601173 + GA-rich Low_complexity Low_complexity 3 106 0 2 704 213 302 222 20 chr12 15657249 15657641 -105599889 - L2a LINE L2 -10 3416 2946 2 704 1667 62 33 9 chr12 15657911 15658122 -105599408 - L1_Mus1 LINE L1 0 6567 6352 2 704 282 29 0 0 chr12 15658437 15658472 -105599058 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 704 312 219 35 17 chr12 15658494 15658610 -105598920 + GA-rich Low_complexity Low_complexity 3 120 0 2 704 354 257 90 77 chr12 15660788 15660944 -105596586 + B4A SINE B4 63 220 -72 2 704 880 153 7 0 chr12 15660814 15660951 -105596579 + B1_Mur4 SINE Alu 13 150 0 2 704 1277 261 28 73 chr12 15661709 15662106 -105595424 + MTEa LTR MaLR 1 379 0 2 704 521 264 40 98 chr12 15662336 15662613 -105594917 - MER58B DNA MER1_type -15 326 66 2 704 255 152 0 0 chr12 15663075 15663121 -105594409 + GA-rich Low_complexity Low_complexity 1 46 0 2 704 823 291 88 21 chr12 15663139 15663378 -105594152 + B4A SINE B4 15 269 -23 2 704 383 118 13 0 chr12 15663386 15663462 -105594068 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 704 185 132 26 0 chr12 15664607 15664645 -105592885 + GA-rich Low_complexity Low_complexity 5 43 0 2 704 557 189 12 12 chr12 15665951 15666122 -105591408 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 704 335 322 30 36 chr12 15666311 15666390 -105591140 - ID_B1 SINE B4 -126 166 15 2 704 397 221 0 0 chr12 15666390 15666458 -105591072 - ID4 SINE ID -1 82 15 2 704 185 196 36 89 chr12 15666689 15666745 -105590785 + L3 LINE CR1 921 973 -3516 2 704 29083 96 8 3 chr12 15667150 15671984 -105585546 - L1_Mus1 LINE L1 0 6567 1709 2 704 1611 55 5 0 chr12 15671985 15672184 -105585346 - L1Md_F2 LINE L1 -1 6581 6382 2 704 951 113 0 13 chr12 15672197 15672349 -105585181 - L1Md_F2 LINE L1 -24 6558 6409 2 704 33223 71 22 8 chr12 15672343 15676981 -105580549 - L1Md_F2 LINE L1 -234 5649 973 2 704 3679 67 22 0 chr12 15676981 15677428 -105580102 + L1Md_F3 LINE L1 6114 6570 -14 2 704 4483 173 20 59 chr12 15677428 15677985 -105579545 - L1Md_F2 LINE L1 -5752 972 418 2 704 3229 107 10 0 chr12 15677983 15678447 -105579083 - L1_Mus1 LINE L1 -4164 1719 1251 2 704 257 51 26 0 chr12 15678447 15678486 -105579044 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 704 3229 156 22 68 chr12 15678486 15679050 -105578480 - L1_Mus1 LINE L1 -4633 1250 725 2 704 526 224 44 7 chr12 15679058 15679193 -105578337 - L1_Mus1 LINE L1 -5813 803 664 2 704 270 242 0 0 chr12 15679311 15679373 -105578157 - L1VL1 LINE L1 -6030 392 331 2 704 731 293 81 0 chr12 15679408 15679606 -105577924 - ID_B1 SINE B4 -10 214 1 2 704 285 371 84 52 chr12 15680539 15680752 -105576778 - MIRb SINE MIR -9 259 40 2 704 446 191 18 0 chr12 15680861 15680971 -105576559 + CT-rich Low_complexity Low_complexity 3 114 0 2 704 341 35 0 50 chr12 15683909 15683969 -105573561 - L1Md_F2 LINE L1 -2 6580 6524 2 704 241 314 71 16 chr12 15684239 15684365 -105573165 + MIRb SINE MIR 91 223 -45 2 704 429 20 0 0 chr12 15685278 15685328 -105572202 + (TAGTG)n Simple_repeat Simple_repeat 4 53 0 2 704 369 333 15 106 chr12 15685328 15685526 -105572004 - B3A SINE B2 -18 180 1 2 704 2105 205 76 8 chr12 15685770 15686164 -105571366 - MTC LTR MaLR 0 421 1 2 704 263 318 0 0 chr12 15686426 15686492 -105571038 + ID4 SINE ID 2 67 -16 2 704 1297 265 22 25 chr12 15686686 15687046 -105570484 + ORR1E LTR MaLR 1 359 0 2 704 587 98 11 0 chr12 15687697 15687789 -105569741 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 704 350 253 218 18 chr12 15688018 15688183 -105569347 - B3A SINE B2 0 198 1 2 704 190 138 17 17 chr12 15689700 15689759 -105567771 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 704 549 44 0 0 chr12 15690469 15690537 -105566993 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 704 6479 86 20 4 chr12 15691599 15692440 -105565090 - L1_Mus4 LINE L1 0 6636 5782 2 704 535 48 5 22 chr12 15692440 15692529 -105565001 - L1_Mus1 LINE L1 -2 6580 6489 2 704 1026 42 0 0 chr12 15692526 15692645 -105564885 - L1_Mus1 LINE L1 -182 6385 6267 2 704 659 62 0 0 chr12 15692645 15692725 -105564805 + L1_Mus1 LINE L1 6171 6250 -316 2 704 3179 93 0 0 chr12 15692725 15693144 -105564386 - L1_Mm LINE L1 -90 5793 5375 2 704 6040 162 14 3 chr12 15693141 15694163 -105563367 + L1_Mm LINE L1 4236 5268 -615 2 704 250 279 169 62 chr12 15694163 15694293 -105563237 - MER3 DNA MER1_type -59 150 7 2 704 783 284 138 40 chr12 15694323 15694401 -105563129 + ORR1E LTR MaLR 1 96 -263 2 704 1096 149 121 29 chr12 15694401 15694608 -105562922 - URR1A DNA MER1_type 0 226 1 2 704 783 284 138 40 chr12 15694608 15694856 -105562674 + ORR1E LTR MaLR 97 359 0 2 704 28 48 0 0 chr12 15696089 15696131 -105561399 + AT_rich Low_complexity Low_complexity 1 42 0 2 704 528 307 0 0 chr12 15696806 15696933 -105560597 + B1F1 SINE Alu 12 138 -11 2 704 537 58 0 0 chr12 15696933 15697002 -105560528 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 704 249 211 0 0 chr12 15697562 15697619 -105559911 + GA-rich Low_complexity Low_complexity 4 60 0 2 704 3117 82 12 19 chr12 15698242 15698666 -105558864 + BGLII LTR ERVK 1 421 0 2 704 509 111 11 0 chr12 15699072 15699160 -105558370 + RMER3D-int LTR ERVK 489 564 -2278 2 704 723 216 0 45 chr12 15699165 15699364 -105558166 + RMER3D-int LTR ERVK 659 848 -1994 2 704 728 206 79 25 chr12 15699384 15699681 -105557849 + RMER3D-int LTR ERVK 359 837 -2005 2 704 225 0 0 0 chr12 15699689 15699714 -105557816 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 2 704 1488 28 0 0 chr12 15699714 15699891 -105557639 + (GGGAA)n Simple_repeat Simple_repeat 2 178 0 2 704 584 58 47 100 chr12 15699897 15700087 -105557443 + GA-rich Low_complexity Low_complexity 1 180 0 2 704 392 72 111 62 chr12 15700110 15700272 -105557258 + GA-rich Low_complexity Low_complexity 1 170 0 2 704 2813 155 94 72 chr12 15700313 15700981 -105556549 + RMER3D-int LTR ERVK 1014 1696 -1146 2 704 3500 186 116 10 chr12 15700971 15701902 -105555628 + MYSERV16_I-int LTR ERVK 1297 2326 0 2 704 3270 81 0 19 chr12 15701902 15702331 -105555199 + BGLII LTR ERVK 1 421 0 2 704 237 211 0 0 chr12 15702548 15702605 -105554925 + (CCA)n Simple_repeat Simple_repeat 2 58 0 2 704 655 313 85 45 chr12 15702614 15702992 -105554538 - L1M2 LINE L1 -559 5753 5361 2 704 1373 96 17 0 chr12 15703244 15703422 -105554108 - B2_Mm2 SINE B2 -14 181 1 2 704 238 210 0 31 chr12 15703715 15703779 -105553751 + GA-rich Low_complexity Low_complexity 1 62 0 2 704 1215 165 136 12 chr12 15706838 15707095 -105550435 - RMER15 LTR ERVL 0 575 287 2 704 737 271 26 94 chr12 15707524 15707833 -105549697 - RMER15 LTR ERVL -287 288 1 2 704 220 282 139 12 chr12 15708465 15708551 -105548979 + MIRb SINE MIR 27 123 -145 2 704 276 261 0 0 chr12 15708651 15708720 -105548810 + GA-rich Low_complexity Low_complexity 1 69 0 2 704 271 105 35 0 chr12 15708721 15708778 -105548752 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 2 704 210 261 63 94 chr12 15709923 15710050 -105547480 + MIRb SINE MIR 25 147 -121 2 704 267 31 0 0 chr12 15710269 15710301 -105547229 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 704 541 281 26 0 chr12 15710332 15710446 -105547084 - RSINE1 SINE B4 -13 152 36 2 704 300 70 0 0 chr12 15711256 15711299 -105546231 + (GGA)n Simple_repeat Simple_repeat 1 43 0 2 704 389 20 20 0 chr12 15711777 15711827 -105545703 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3 704 233 57 29 0 chr12 15711828 15711863 -105545667 + (CATA)n Simple_repeat Simple_repeat 1 36 0 3 704 247 330 95 12 chr12 15711985 15712188 -105545342 + MIRb SINE MIR 17 245 -23 3 704 432 305 0 38 chr12 15712419 15712603 -105544927 + GA-rich Low_complexity Low_complexity 3 179 0 3 704 528 273 19 43 chr12 15713459 15713675 -105543855 - MLT1C LTR MaLR -124 266 63 3 704 1406 236 93 9 chr12 15713905 15714239 -105543291 + MTE2a LTR MaLR 16 377 -2 3 704 302 226 163 23 chr12 15715233 15715319 -105542211 + B4 SINE B4 2 99 -193 3 704 629 273 78 81 chr12 15715367 15715442 -105542088 + ORR1D2 LTR MaLR 101 167 -203 3 704 258 32 0 0 chr12 15715442 15715473 -105542057 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 704 629 273 78 81 chr12 15715473 15715668 -105541862 + ORR1D2 LTR MaLR 168 369 -1 3 704 629 293 58 23 chr12 15715689 15715860 -105541670 + B4 SINE B4 103 279 -13 3 704 399 56 0 0 chr12 15715862 15715916 -105541614 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 704 702 189 0 0 chr12 15716490 15716665 -105540865 + GA-rich Low_complexity Low_complexity 3 177 0 3 704 529 297 34 70 chr12 15716729 15716930 -105540600 - B3A SINE B2 -4 194 1 3 704 4205 123 22 15 chr12 15717055 15717658 -105539872 + Lx LINE L1 6047 6653 -1 3 704 423 283 179 0 chr12 15717682 15717855 -105539675 - ID_B1 SINE B4 -18 206 3 3 704 324 310 22 50 chr12 15718243 15718423 -105539107 - L1M5 LINE L1 -394 5785 5611 3 704 396 0 0 0 chr12 15718521 15718565 -105538965 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 704 457 277 18 0 chr12 15718570 15718682 -105538848 - B3A SINE B2 -78 120 7 3 704 405 0 0 0 chr12 15718698 15718743 -105538787 + (TTAG)n Simple_repeat Simple_repeat 4 48 0 3 704 346 209 29 15 chr12 15718749 15718817 -105538713 - ID4 SINE ID -13 70 2 3 704 366 291 141 28 chr12 15718847 15719208 -105538322 - L1MD LINE L1 -896 5250 4849 3 704 273 241 0 88 chr12 15719324 15719335 -105538195 - PB1D9 SINE Alu -2 118 108 3 704 212 0 0 35 chr12 15719335 15719364 -105538166 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 704 471 122 0 25 chr12 15719364 15719443 -105538087 - B1_Mm SINE Alu -9 138 36 3 704 432 296 17 102 chr12 15719479 15719656 -105537874 + RSINE1 SINE B4 4 165 0 3 704 393 339 116 36 chr12 15719929 15720395 -105537135 - L1M5 LINE L1 -1626 4520 4018 3 704 515 262 87 0 chr12 15720726 15720852 -105536678 - Lx8 LINE L1 -285 7188 7052 3 704 1379 213 75 58 chr12 15721033 15721392 -105536138 - ORR1D2 LTR MaLR 0 370 6 3 704 309 282 39 26 chr12 15721668 15721821 -105535709 - L1M5 LINE L1 -2664 3482 3328 3 704 342 123 0 0 chr12 15722172 15722229 -105535301 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 704 1673 314 82 21 chr12 15722780 15723583 -105533947 + MER63C DNA AcHobo 79 930 0 3 704 24 0 0 0 chr12 15726015 15726039 -105531491 + AT_rich Low_complexity Low_complexity 1 24 0 3 704 540 0 0 0 chr12 15726922 15726982 -105530548 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 704 182 300 0 0 chr12 15727504 15727554 -105529976 - MIR SINE MIR -101 107 58 3 10 363 122 0 95 chr12 15728576 15728766 -105528764 + GA-rich Low_complexity Low_complexity 3 174 0 3 705 316 130 106 0 chr12 15728781 15728942 -105528588 + (CAGGA)n Simple_repeat Simple_repeat 2 179 0 3 705 236 146 73 0 chr12 15728944 15728999 -105528531 + GA-rich Low_complexity Low_complexity 2 60 0 3 705 208 337 123 79 chr12 15729394 15729671 -105527859 - L3 LINE CR1 -26 4463 4175 3 705 1196 58 0 0 chr12 15729853 15729990 -105527540 - B1_Mus1 SINE Alu -10 138 2 3 705 1139 339 111 9 chr12 15730048 15730706 -105526824 + Lx8 LINE L1 6653 7377 -96 3 705 211 167 59 29 chr12 15730787 15730855 -105526675 + (TAAA)n Simple_repeat Simple_repeat 4 73 0 3 705 282 56 0 0 chr12 15731263 15731299 -105526231 + (TTG)n Simple_repeat Simple_repeat 3 38 0 3 705 22 35 0 0 chr12 15731583 15731612 -105525918 + AT_rich Low_complexity Low_complexity 1 29 0 3 705 1511 114 108 50 chr12 15732479 15732757 -105524773 - IAPLTR2b LTR ERVK -33 294 1 3 705 396 0 0 0 chr12 15733129 15733173 -105524357 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 705 492 18 0 0 chr12 15733173 15733229 -105524301 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 705 450 340 104 8 chr12 15733234 15733283 -105524247 - B4 SINE B4 -27 265 218 3 705 200 34 0 33 chr12 15733283 15733313 -105524217 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 705 450 340 104 8 chr12 15733313 15733424 -105524106 - B4 SINE B4 -75 217 86 3 705 270 0 0 0 chr12 15733424 15733454 -105524076 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 705 450 340 104 8 chr12 15733454 15733532 -105523998 - B4 SINE B4 -207 85 5 3 705 1126 180 71 0 chr12 15733620 15733831 -105523699 - URR1A DNA MER1_type 0 226 1 3 705 492 66 43 21 chr12 15734516 15734609 -105522921 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 3 705 32 26 0 0 chr12 15737132 15737171 -105520359 + AT_rich Low_complexity Low_complexity 1 39 0 3 705 217 317 33 0 chr12 15737540 15737600 -105519930 - RSINE1 SINE B4 -13 152 91 3 705 243 323 32 0 chr12 15737891 15737984 -105519546 - L4 LINE RTE -190 1839 1744 3 705 238 334 90 13 chr12 15738534 15738704 -105518826 - MIRm SINE MIR -49 219 20 3 705 521 278 75 0 chr12 15739066 15739199 -105518331 + RSINE1 SINE B4 4 146 -19 3 705 185 0 40 0 chr12 15739510 15739535 -105517995 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 705 448 280 36 36 chr12 15739702 15739839 -105517691 + B1F SINE Alu 3 139 -10 3 705 304 255 57 24 chr12 15741030 15741150 -105516380 + B3A SINE B2 2 126 -69 3 705 360 0 0 0 chr12 15741158 15741198 -105516332 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 705 194 191 0 21 chr12 15741343 15741391 -105516139 + GA-rich Low_complexity Low_complexity 2 48 0 3 705 223 174 0 0 chr12 15741431 15741477 -105516053 + A-rich Low_complexity Low_complexity 1 46 0 3 705 820 170 28 0 chr12 15741504 15741645 -105515885 + B1_Mur4 SINE Alu 6 150 0 3 705 1190 97 0 0 chr12 15742469 15742613 -105514917 + B1_Mus2 SINE Alu 2 145 -2 3 705 231 61 0 0 chr12 15742614 15742647 -105514883 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 3 705 465 135 0 0 chr12 15742851 15742940 -105514590 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 3 705 8691 86 42 48 chr12 15742959 15744213 -105513317 + Lx3_Mus LINE L1 5764 7009 0 3 705 288 212 45 0 chr12 15744342 15744408 -105513122 - ID4 SINE ID -3 80 12 3 705 504 117 0 0 chr12 15744429 15744506 -105513024 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 3 705 997 47 141 0 chr12 15744506 15744634 -105512896 - B1_Mus2 SINE Alu 0 147 2 3 705 441 0 0 0 chr12 15744716 15744765 -105512765 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 705 506 296 97 40 chr12 15746561 15746722 -105510808 + B3A SINE B2 2 175 -23 3 705 390 74 0 0 chr12 15746722 15746776 -105510754 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 705 506 296 97 40 chr12 15746776 15746790 -105510740 + B3A SINE B2 176 187 -11 3 705 252 200 0 0 chr12 15746895 15746960 -105510570 + GA-rich Low_complexity Low_complexity 2 66 0 3 705 492 93 0 0 chr12 15747337 15747412 -105510118 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 705 518 83 0 23 chr12 15747470 15747556 -105509974 + (CAGA)n Simple_repeat Simple_repeat 2 85 0 3 705 2114 300 42 29 chr12 15747558 15748361 -105509169 - Lx8 LINE L1 -153 7320 6507 3 705 227 104 21 0 chr12 15748413 15748461 -105509069 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 3 705 26 0 0 0 chr12 15748795 15748821 -105508709 + AT_rich Low_complexity Low_complexity 1 26 0 3 705 28 0 0 0 chr12 15749600 15749628 -105507902 + AT_rich Low_complexity Low_complexity 1 28 0 3 705 290 232 243 14 chr12 15750667 15750807 -105506723 - Charlie4a DNA MER1_type -24 484 313 3 705 785 313 12 54 chr12 15750907 15751147 -105506383 - B4A SINE B4 -61 231 2 3 705 325 237 0 26 chr12 15751438 15751516 -105506014 + RLTR25A LTR ERVK 512 587 -516 3 705 781 50 0 0 chr12 15751450 15751550 -105505980 + B1_Mus2 SINE Alu 48 147 0 3 705 725 276 29 6 chr12 15751873 15752048 -105505482 - B3A SINE B2 -18 180 2 3 705 232 320 13 13 chr12 15752130 15752206 -105505324 - MIRc SINE MIR -65 203 128 3 705 953 188 176 5 chr12 15752226 15752419 -105505111 + URR1A DNA MER1_type 1 226 0 3 705 557 366 62 4 chr12 15753306 15753531 -105503999 + ORR1E LTR MaLR 1 238 -121 3 705 369 0 0 0 chr12 15754826 15754867 -105502663 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 705 294 338 14 0 chr12 15754875 15754946 -105502584 - B4 SINE B4 0 292 221 3 705 286 331 104 18 chr12 15755795 15755958 -105501572 + MIRb SINE MIR 39 215 -53 3 705 480 99 0 0 chr12 15756132 15756203 -105501327 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 705 486 283 248 21 chr12 15756248 15756486 -105501044 - B4 SINE B4 0 292 1 3 705 597 295 104 12 chr12 15757256 15757496 -105500034 - MER44A DNA MER2_type -41 298 37 3 705 226 293 80 0 chr12 15757943 15758018 -105499512 + B4A SINE B4 143 223 -69 3 705 1307 231 49 122 chr12 15758179 15758588 -105498942 + MTE2a LTR MaLR 1 379 0 3 705 301 274 90 58 chr12 15758760 15758915 -105498615 + MER5A DNA MER1_type 28 187 -2 3 705 225 0 0 0 chr12 15759595 15759620 -105497910 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 705 280 176 0 0 chr12 15760437 15760488 -105497042 + MTEa LTR MaLR 1 51 -328 3 705 222 37 0 0 chr12 15761093 15761120 -105496410 + (T)n Simple_repeat Simple_repeat 1 27 0 3 705 441 54 0 0 chr12 15761147 15761203 -105496327 + (GAAA)n Simple_repeat Simple_repeat 3 58 0 3 705 231 36 0 0 chr12 15762232 15762260 -105495270 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 3 705 336 93 26 13 chr12 15762348 15762424 -105495106 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 705 559 308 55 25 chr12 15762429 15762629 -105494901 - B4A SINE B4 -4 288 83 3 705 379 331 89 102 chr12 15763556 15763849 -105493681 - ORR1E LTR MaLR -70 289 1 4 705 252 226 0 19 chr12 15764070 15764124 -105493406 - MIR SINE MIR -120 88 36 4 705 1068 119 275 6 chr12 15764577 15764755 -105492775 - URR1A DNA MER1_type 0 226 1 4 705 837 272 107 33 chr12 15764927 15765197 -105492333 - B4 SINE B4 0 292 3 4 705 23 0 0 0 chr12 15765202 15765225 -105492305 + AT_rich Low_complexity Low_complexity 1 23 0 4 705 315 0 0 0 chr12 15765599 15765634 -105491896 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 705 291 214 0 0 chr12 15766128 15766198 -105491332 + CT-rich Low_complexity Low_complexity 3 72 0 4 705 570 313 54 80 chr12 15766815 15767204 -105490326 - MTEa LTR MaLR 0 379 1 4 705 201 39 0 0 chr12 15767866 15767892 -105489638 + (A)n Simple_repeat Simple_repeat 1 26 0 4 705 8150 67 8 3 chr12 15769060 15770662 -105486868 + L1_Mus1 LINE L1 4949 6563 -4 4 705 198 91 0 0 chr12 15771043 15771076 -105486454 + (T)n Simple_repeat Simple_repeat 1 33 0 4 705 340 299 64 47 chr12 15771147 15771319 -105486211 - B4A SINE B4 -4 288 114 4 705 1164 63 28 0 chr12 15771654 15771797 -105485733 + B1_Mus1 SINE Alu 2 148 0 4 705 186 43 0 0 chr12 15771991 15772014 -105485516 + (TAG)n Simple_repeat Simple_repeat 1 23 0 4 705 23 0 0 0 chr12 15772034 15772057 -105485473 + AT_rich Low_complexity Low_complexity 1 23 0 4 705 279 290 7 36 chr12 15773664 15773770 -105483760 + MIRc SINE MIR 152 252 -16 4 705 567 122 0 0 chr12 15773957 15774047 -105483483 + (TA)n Simple_repeat Simple_repeat 1 90 0 4 705 182 192 19 0 chr12 15774404 15774456 -105483074 + GA-rich Low_complexity Low_complexity 3 55 0 4 705 627 265 8 0 chr12 15774505 15774637 -105482893 + RSINE1 SINE B4 2 134 -31 4 705 1162 189 14 5 chr12 15774982 15775200 -105482330 + URR1A DNA MER1_type 7 226 0 4 705 267 345 84 6 chr12 15775506 15775684 -105481846 + MIRc SINE MIR 52 243 -25 4 705 322 282 44 37 chr12 15777196 15777332 -105480198 - MLT1A1 LTR MaLR -271 137 1 4 705 297 180 140 0 chr12 15779599 15779699 -105477831 + Lx5 LINE L1 6937 7050 0 4 705 259 283 0 0 chr12 15781079 15781139 -105476391 - tRNA-Met-i tRNA tRNA -15 60 1 4 705 307 270 147 20 chr12 15781253 15781355 -105476175 + PB1D10 SINE Alu 1 115 -2 4 705 1262 285 9 35 chr12 15782931 15783276 -105474254 + MTE2b LTR MaLR 5 340 -39 4 705 288 277 24 12 chr12 15783401 15783485 -105474045 + ORR1E LTR MaLR 65 149 -210 4 705 240 267 120 0 chr12 15783643 15783718 -105473812 + ORR1E LTR MaLR 281 364 -15 4 705 1791 237 60 33 chr12 15784962 15785005 -105472525 - MT2A LTR ERVL -3 530 463 4 705 471 35 0 0 chr12 15785005 15785062 -105472468 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 705 1791 237 60 33 chr12 15785062 15785467 -105472063 - MT2A LTR ERVL -71 462 70 4 705 1606 225 61 82 chr12 15785467 15785942 -105471588 + Lx6 LINE L1 6994 7458 -2 4 705 441 195 11 0 chr12 15785942 15786029 -105471501 - MT2A LTR ERVL -445 88 1 4 705 440 280 50 28 chr12 15786054 15786267 -105471263 - MLT1A0 LTR MaLR -2 372 137 4 705 343 311 32 56 chr12 15786903 15787029 -105470501 + B4A SINE B4 88 210 -82 4 705 308 358 141 32 chr12 15787324 15787882 -105469648 + HERV16-int LTR ERVL 2164 2764 -2232 4 705 360 269 0 9 chr12 15788299 15788404 -105469126 + MTEb LTR MaLR 75 178 -201 4 705 994 64 6 25 chr12 15788436 15788596 -105468934 + (TTCTC)n Simple_repeat Simple_repeat 5 161 0 4 705 245 29 29 0 chr12 15788596 15788630 -105468900 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 4 705 276 308 59 70 chr12 15788798 15789084 -105468446 + L1MEc LINE L1 2041 2323 -4077 4 705 433 285 63 90 chr12 15789107 15789296 -105468234 + B3A SINE B2 2 185 -10 4 705 299 263 87 34 chr12 15789736 15789923 -105467607 + L1MEc LINE L1 4276 4472 -1841 4 705 892 245 14 14 chr12 15790016 15790227 -105467303 + B3 SINE B2 6 216 0 4 705 1821 135 54 78 chr12 15790501 15790825 -105466705 - ORR1C2 LTR MaLR -7 377 63 4 705 2083 97 12 51 chr12 15790825 15791160 -105466370 - RLTRETN_Mm LTR ERVK 0 322 1 4 705 1821 135 54 78 chr12 15791160 15791221 -105466309 - ORR1C2 LTR MaLR -322 62 1 4 705 366 340 97 44 chr12 15791389 15791894 -105465636 + MT2A LTR ERVL 1 532 -1 4 705 238 330 91 58 chr12 15792611 15792852 -105464678 + RLTR15 LTR ERVK 43 291 -68 4 705 24 53 0 0 chr12 15792924 15792962 -105464568 + AT_rich Low_complexity Low_complexity 1 38 0 4 705 199 0 0 61 chr12 15793177 15793210 -105464320 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 4 705 579 15 0 0 chr12 15793223 15793291 -105464239 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 705 2817 174 25 46 chr12 15793944 15794492 -105463038 - MERVK26-int LTR ERVK -6381 538 2 4 705 865 281 90 81 chr12 15794628 15795186 -105462344 - RLTR26 LTR ERVK -79 563 1 4 705 468 318 138 4 chr12 15796202 15796470 -105461060 - MLT1A LTR MaLR -2 372 69 4 705 228 35 0 0 chr12 15796886 15796915 -105460615 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 705 369 0 0 0 chr12 15800981 15801022 -105456508 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 4 705 572 193 61 0 chr12 15801688 15801802 -105455728 + ID_B1 SINE B4 84 204 -20 4 705 231 61 0 0 chr12 15802462 15802495 -105455035 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 705 261 83 0 0 chr12 15802958 15802994 -105454536 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 4 705 1195 99 172 0 chr12 15804250 15804442 -105453088 + URR1A DNA MER1_type 2 226 0 4 705 246 62 0 0 chr12 15804708 15804740 -105452790 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 705 651 286 6 58 chr12 15809460 15809631 -105447899 + RSINE1 SINE B4 3 164 -1 4 705 222 37 0 0 chr12 15809658 15809685 -105447845 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 705 226 316 152 10 chr12 15809749 15809848 -105447682 + MIRm SINE MIR 161 273 -3 4 705 287 267 0 65 chr12 15809976 15810068 -105447462 + PB1D9 SINE Alu 18 103 -17 4 705 736 243 11 58 chr12 15810093 15810281 -105447249 + B3A SINE B2 4 182 -16 4 705 435 78 0 0 chr12 15810311 15810375 -105447155 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 705 774 246 94 68 chr12 15811068 15811334 -105446196 + B4 SINE B4 2 274 -18 4 705 243 177 0 0 chr12 15811464 15811526 -105446004 + GA-rich Low_complexity Low_complexity 1 62 0 4 705 252 0 0 0 chr12 15813333 15813361 -105444169 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 705 351 0 0 0 chr12 15813880 15813919 -105443611 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 705 508 101 11 11 chr12 15814578 15814668 -105442862 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 705 2086 82 0 4 chr12 15815526 15815797 -105441733 - L1_Mus1 LINE L1 -301 6266 5997 4 705 2440 59 3 0 chr12 15815798 15816101 -105441429 + L1_Mus1 LINE L1 6264 6567 0 4 705 516 16 0 0 chr12 15816416 15816477 -105441053 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 705 216 0 0 0 chr12 15816963 15816987 -105440543 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 705 258 106 0 0 chr12 15817102 15817149 -105440381 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 4 705 1035 256 35 18 chr12 15817154 15817440 -105440090 - B4 SINE B4 0 292 2 4 705 181 129 0 0 chr12 15817657 15817688 -105439842 - MIR SINE MIR -122 140 110 4 705 1065 92 0 0 chr12 15818883 15819056 -105438474 + (CA)n Simple_repeat Simple_repeat 1 173 0 4 705 333 0 0 0 chr12 15820944 15820981 -105436549 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 4 705 44 0 0 0 chr12 15821952 15821996 -105435534 + AT_rich Low_complexity Low_complexity 1 44 0 4 705 183 129 0 0 chr12 15822986 15823017 -105434513 + (A)n Simple_repeat Simple_repeat 1 31 0 4 705 206 220 20 0 chr12 15823701 15823751 -105433779 + C-rich Low_complexity Low_complexity 5 55 0 4 705 811 173 128 0 chr12 15825373 15825552 -105431978 + URR1A DNA MER1_type 2 203 -23 4 705 342 0 0 0 chr12 15825616 15825654 -105431876 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 705 315 0 0 0 chr12 15825654 15825688 -105431842 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 705 1196 121 125 5 chr12 15826178 15826378 -105431152 + URR1A DNA MER1_type 3 226 0 4 705 214 143 41 0 chr12 15826745 15826794 -105430736 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 705 282 180 20 0 chr12 15827288 15827338 -105430192 - MT2A LTR ERVL -383 150 100 4 705 440 193 138 17 chr12 15827340 15827456 -105430074 - MT2A LTR ERVL -401 132 3 4 705 567 0 0 0 chr12 15827855 15827918 -105429612 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 705 187 286 0 0 chr12 15829018 15829067 -105428463 - MIRb SINE MIR -68 200 152 4 705 1728 165 28 20 chr12 15829490 15829843 -105427687 + ORR1C2 LTR MaLR 29 384 0 4 705 186 43 0 0 chr12 15830820 15830843 -105426687 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 705 1276 34 0 0 chr12 15830846 15830993 -105426537 - B1_Mm SINE Alu 0 147 1 4 705 699 258 114 44 chr12 15831770 15831800 -105425730 + MT2A LTR ERVL 152 183 -350 4 705 387 0 0 0 chr12 15831800 15831843 -105425687 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 4 705 1897 97 101 23 chr12 15831843 15832150 -105425380 - L1_Mus3 LINE L1 -12 6626 6296 4 705 699 258 114 44 chr12 15832150 15832434 -105425096 + MT2A LTR ERVL 184 488 -45 4 705 564 285 43 38 chr12 15832654 15832868 -105424662 + MTEa LTR MaLR 5 222 -157 4 705 1349 199 258 71 chr12 15832897 15833346 -105424184 + MT2A LTR ERVL 1 533 0 4 705 335 326 36 36 chr12 15833752 15833889 -105423641 + B1F SINE Alu 1 137 -12 4 705 317 243 0 39 chr12 15833897 15833974 -105423556 + ID4_ SINE ID 1 74 -9 4 705 615 284 82 117 chr12 15834249 15834652 -105422878 - MLT1F2 LTR MaLR 0 560 172 4 705 1130 196 53 53 chr12 15834710 15834974 -105422556 - RMER4B LTR ERVK -2 583 320 4 705 202 55 0 53 chr12 15834982 15835020 -105422510 + (TTCC)n Simple_repeat Simple_repeat 4 39 0 4 705 1704 151 28 0 chr12 15835025 15835342 -105422188 - RMER4B LTR ERVK -246 339 14 4 705 678 25 0 0 chr12 15836268 15836348 -105421182 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 705 241 319 14 0 chr12 15836730 15836802 -105420728 + MLT1H1 LTR MaLR 300 372 -183 5 705 1147 68 0 0 chr12 15836987 15837134 -105420396 - B1_Mus2 SINE Alu 0 147 1 5 705 450 319 0 20 chr12 15837155 15837302 -105420228 - MT2A LTR ERVL -71 462 319 5 705 294 329 46 26 chr12 15837305 15837458 -105420072 - MT2A LTR ERVL -335 198 43 5 705 528 68 0 0 chr12 15838551 15838624 -105418906 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 705 324 0 0 0 chr12 15839155 15839191 -105418339 + (T)n Simple_repeat Simple_repeat 1 36 0 5 705 318 303 10 0 chr12 15840005 15840104 -105417426 - B1F SINE Alu -8 141 42 5 705 829 57 194 8 chr12 15840213 15840337 -105417193 + B1_Mus2 SINE Alu 1 147 0 5 705 2289 225 7 11 chr12 15840368 15840809 -105416721 - Lx9 LINE L1 -893 6751 6313 5 705 223 143 20 20 chr12 15840813 15840863 -105416667 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 5 705 741 269 26 31 chr12 15843173 15843399 -105414131 + MER2 DNA MER2_type 120 344 -1 5 705 210 258 14 43 chr12 15843621 15843690 -105413840 + L2b LINE L2 3304 3370 -5 5 705 438 20 0 0 chr12 15844058 15844109 -105413421 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 705 630 345 55 16 chr12 15844510 15844766 -105412764 + B4A SINE B4 14 279 -13 5 705 297 0 0 0 chr12 15844775 15844808 -105412722 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 705 388 171 261 54 chr12 15845516 15845646 -105411884 - Lx8 LINE L1 -1096 6377 6221 5 705 576 0 0 0 chr12 15845683 15845747 -105411783 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 705 496 292 0 8 chr12 15845777 15845898 -105411632 - Lx8 LINE L1 -763 6710 6591 5 705 653 257 34 34 chr12 15845900 15846077 -105411453 + B3A SINE B2 5 181 -17 5 705 405 258 104 78 chr12 15846104 15846567 -105410963 + BLACKJACK DNA AcHobo 2437 2911 -33 5 705 574 157 28 0 chr12 15846723 15846973 -105410557 + (TG)n Simple_repeat Simple_repeat 1 257 0 5 705 570 232 187 44 chr12 15847086 15847311 -105410219 + Lx8 LINE L1 6841 7097 -376 5 705 271 285 17 132 chr12 15847868 15848042 -105409488 - BLACKJACK DNA AcHobo -934 2010 1857 5 705 664 313 98 8 chr12 15848047 15848311 -105409219 + B4A SINE B4 3 290 -2 5 705 450 101 0 0 chr12 15848316 15848385 -105409145 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 705 263 311 128 21 chr12 15848466 15848515 -105409015 - BLACKJACK DNA AcHobo -1193 1751 1692 5 705 381 93 0 0 chr12 15848515 15848569 -105408961 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 5 705 263 311 128 21 chr12 15848569 15848762 -105408768 - BLACKJACK DNA AcHobo -1253 1691 1484 5 705 311 281 49 8 chr12 15848934 15849056 -105408474 - BLACKJACK DNA AcHobo -1725 1219 1093 5 705 373 339 0 0 chr12 15849061 15849170 -105408360 + B1F SINE Alu 40 148 -1 5 705 502 318 69 4 chr12 15849191 15849453 -105408077 - BLACKJACK DNA AcHobo -1857 1087 809 5 705 205 195 24 0 chr12 15849475 15849516 -105408014 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 5 705 495 0 0 0 chr12 15849516 15849571 -105407959 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 705 329 62 21 0 chr12 15849571 15849618 -105407912 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 705 353 64 0 0 chr12 15849618 15849665 -105407865 - ORR1A4 LTR MaLR -9 320 274 5 705 1243 264 33 72 chr12 15849792 15850183 -105407347 - MTE2a LTR MaLR -2 377 2 5 705 348 351 69 8 chr12 15850291 15850538 -105406992 - BLACKJACK DNA AcHobo -2590 354 93 5 705 578 259 82 10 chr12 15850669 15850876 -105406654 + ID_B1 SINE B4 3 224 0 5 705 316 327 13 19 chr12 15851497 15851656 -105405874 + Charlie13b DNA Charlie 169 326 -186 5 705 353 286 83 35 chr12 15852378 15852523 -105405007 + MLT2C1 LTR ERVL 163 314 -83 5 705 377 198 11 0 chr12 15852574 15852665 -105404865 + GA-rich Low_complexity Low_complexity 2 93 0 5 705 987 265 78 3 chr12 15852688 15853032 -105404498 - ORR1D2 LTR MaLR 0 370 1 5 705 669 272 147 53 chr12 15853071 15853221 -105404309 + ORR1E LTR MaLR 1 175 -184 5 705 549 0 0 0 chr12 15853221 15853282 -105404248 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 705 669 272 147 53 chr12 15853282 15853450 -105404080 + ORR1E LTR MaLR 176 348 -11 5 705 360 273 0 91 chr12 15853523 15853643 -105403887 + MLT1B-int LTR MaLR 53 158 -1213 5 705 1209 125 125 0 chr12 15853643 15853843 -105403687 - URR1A DNA MER1_type 0 226 2 5 705 360 273 0 91 chr12 15853843 15853887 -105403643 + MLT1B-int LTR MaLR 159 201 -1170 5 705 303 296 0 24 chr12 15853954 15854037 -105403493 + MLT1B LTR MaLR 250 330 -60 5 705 447 202 138 2 chr12 15855266 15855384 -105402146 + B1_Mur1 SINE Alu 8 137 -12 5 705 681 114 0 0 chr12 15855384 15855489 -105402041 + (CCA)n Simple_repeat Simple_repeat 3 107 0 5 705 101 62 0 0 chr12 15856059 15856237 -105401293 + AT_rich Low_complexity Low_complexity 1 178 0 5 705 808 156 12 6 chr12 15856285 15856446 -105401084 + GA-rich Low_complexity Low_complexity 1 162 0 5 705 281 242 16 0 chr12 15857589 15857651 -105399879 - MIRm SINE MIR 0 276 214 5 705 397 256 102 37 chr12 15857795 15857982 -105399548 + MER2 DNA MER2_type 84 282 -63 5 705 266 143 16 0 chr12 15858002 15858065 -105399465 + GA-rich Low_complexity Low_complexity 2 65 0 5 705 307 262 188 39 chr12 15858761 15858975 -105398555 - MTE2a LTR MaLR -80 299 54 5 705 368 246 201 0 chr12 15859027 15859161 -105398369 - ID_B1 SINE B4 -62 162 2 5 705 389 331 23 12 chr12 15859162 15859333 -105398197 - MLT1B LTR MaLR -213 177 5 5 705 180 241 48 65 chr12 15859523 15859585 -105397945 + L3 LINE CR1 4415 4475 -14 5 706 505 284 56 17 chr12 15862253 15862432 -105395098 - ID_B1 SINE B4 -38 186 1 5 706 401 354 11 16 chr12 15863365 15863549 -105393981 - ORR1E LTR MaLR -167 192 10 5 706 254 297 27 0 chr12 15864086 15864160 -105393370 - L2b LINE L2 -27 3348 3273 5 706 219 125 50 0 chr12 15866797 15866837 -105390693 + CT-rich Low_complexity Low_complexity 4 45 0 5 706 243 0 0 0 chr12 15867509 15867536 -105389994 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 5 706 234 0 0 0 chr12 15868940 15868966 -105388564 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 706 1262 254 14 4 chr12 15868977 15869253 -105388277 + MTE2b LTR MaLR 1 279 -100 5 706 667 235 138 36 chr12 15869370 15869595 -105387935 - Lx2B LINE L1 0 7000 6753 5 706 322 130 51 25 chr12 15869591 15869670 -105387860 - Lx4B LINE L1 -906 6152 6072 5 706 9653 139 42 63 chr12 15869669 15871210 -105386320 - L1_Mur2 LINE L1 -833 5044 3483 5 706 1402 99 16 0 chr12 15871210 15871401 -105386129 - B2_Mm2 SINE B2 -1 194 1 5 706 9653 139 42 63 chr12 15871401 15871799 -105385731 - L1_Mur2 LINE L1 -2395 3482 3146 5 706 783 64 0 0 chr12 15871803 15871913 -105385617 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 5 706 1733 146 0 0 chr12 15872538 15872832 -105384698 - MusHAL1 LINE L1 -750 1962 1669 5 706 42055 8 1 1 chr12 15872822 15879197 -105378333 - L1Md_A LINE L1 0 6582 214 5 706 4410 159 6 38 chr12 15879198 15880064 -105377466 - L1_Mur2 LINE L1 -2983 2903 2066 5 706 360 0 0 0 chr12 15880064 15880104 -105377426 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 706 4410 159 6 38 chr12 15880104 15880122 -105377408 - L1_Mur2 LINE L1 -3821 2065 2048 5 706 1692 184 11 3 chr12 15880145 15880507 -105377023 + L1_Mur1 LINE L1 1003 1367 -2545 5 706 613 329 58 64 chr12 15880515 15881029 -105376501 + Lx8 LINE L1 6961 7471 -2 5 706 673 282 66 47 chr12 15881756 15882057 -105375473 + Lx8 LINE L1 7139 7445 -28 5 706 1256 34 0 0 chr12 15884394 15884541 -105372989 + B1_Mus2 SINE Alu 1 147 0 5 706 2094 139 43 8 chr12 15884922 15885293 -105372237 - ORR1B1 LTR MaLR -8 386 3 5 706 261 330 9 9 chr12 15885510 15885623 -105371907 + GA-rich Low_complexity Low_complexity 3 115 0 5 706 245 29 29 0 chr12 15885648 15885682 -105371848 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 706 198 336 65 8 chr12 15885891 15886014 -105371516 - MIR SINE MIR -58 150 21 5 706 1190 48 0 20 chr12 15888289 15888300 -105369230 - B1_Mus2 SINE Alu 0 147 139 5 706 213 65 0 0 chr12 15888300 15888331 -105369199 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 706 1190 48 0 20 chr12 15888331 15888469 -105369061 - B1_Mus2 SINE Alu -9 138 1 5 706 816 137 0 0 chr12 15889146 15889285 -105368245 + (TA)n Simple_repeat Simple_repeat 1 139 0 5 706 670 333 126 0 chr12 15889521 15890067 -105367463 - L1MA8 LINE L1 -367 5924 5310 5 706 761 235 130 0 chr12 15891422 15891622 -105365908 + URR1A DNA MER1_type 1 226 0 5 706 653 62 9 18 chr12 15891934 15892048 -105365482 + L1Md_F3 LINE L1 6472 6584 0 5 706 24 53 0 0 chr12 15892048 15892086 -105365444 + AT_rich Low_complexity Low_complexity 1 38 0 5 706 248 282 79 93 chr12 15894155 15894370 -105363160 + L2b LINE L2 3174 3385 -2 5 706 322 316 66 0 chr12 15894547 15894699 -105362831 - MIRc SINE MIR -18 250 89 5 706 419 257 352 29 chr12 15895055 15895328 -105362202 + MTD LTR MaLR 10 370 -49 5 706 2261 106 6 3 chr12 15895330 15895641 -105361889 + L1VL4 LINE L1 85 396 -5906 5 706 1079 68 0 0 chr12 15895634 15895780 -105361750 + MusHAL1 LINE L1 326 471 -2241 5 706 290 113 27 3 chr12 15895780 15895839 -105361691 + MTD LTR MaLR 357 420 -1 5 706 346 283 70 105 chr12 15896101 15896249 -105361281 + MT2A LTR ERVL 302 460 -73 5 706 516 106 0 0 chr12 15896249 15896343 -105361187 + (TCTCTG)n Simple_repeat Simple_repeat 6 99 0 5 706 346 283 70 105 chr12 15896343 15896365 -105361165 + MT2A LTR ERVL 461 483 -50 5 706 396 0 0 0 chr12 15896365 15896409 -105361121 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 706 346 283 70 105 chr12 15896409 15896466 -105361064 + MT2A LTR ERVL 484 522 -11 5 706 576 29 0 0 chr12 15897199 15897269 -105360261 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 5 706 381 292 52 39 chr12 15897566 15897719 -105359811 + L3b LINE CR1 195 349 -133 5 706 182 320 82 10 chr12 15897910 15898008 -105359522 - L2a LINE L2 -31 3395 3291 5 706 315 0 0 0 chr12 15898063 15898098 -105359432 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 706 876 46 0 0 chr12 15898550 15898659 -105358871 + (TCC)n Simple_repeat Simple_repeat 3 111 0 5 706 551 263 132 38 chr12 15898850 15899115 -105358415 + MTE-int LTR MaLR 196 485 -1095 5 706 641 13 0 13 chr12 15899223 15899302 -105358228 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 5 706 993 17 0 0 chr12 15899373 15899488 -105358042 + (TG)n Simple_repeat Simple_repeat 2 116 0 5 706 474 65 0 0 chr12 15899646 15899708 -105357822 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 5 706 222 116 0 0 chr12 15899702 15899745 -105357785 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 5 706 561 30 0 0 chr12 15900936 15901003 -105356527 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 706 707 310 72 14 chr12 15901395 15901824 -105355706 + Lx8 LINE L1 6709 7172 -524 6 706 846 155 0 18 chr12 15901903 15902074 -105355456 + CT-rich Low_complexity Low_complexity 2 169 0 6 706 462 336 143 18 chr12 15902835 15903114 -105354416 + MER2 DNA MER2_type 26 339 -6 6 706 530 122 0 10 chr12 15903279 15903378 -105354152 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 706 206 291 0 0 chr12 15904901 15904956 -105352574 + CT-rich Low_complexity Low_complexity 4 58 0 6 706 580 259 0 14 chr12 15906239 15906380 -105351150 + B1_Mur1 SINE Alu 9 147 -2 6 706 376 278 144 40 chr12 15907851 15908053 -105349477 - RMER15 LTR ERVL -17 558 336 6 706 691 248 46 66 chr12 15908076 15908335 -105349195 - B4A SINE B4 -25 267 14 6 706 1425 34 0 0 chr12 15910213 15910392 -105347138 + (TC)n Simple_repeat Simple_repeat 1 179 0 6 706 252 0 0 0 chr12 15910933 15910961 -105346569 + (TCTCC)n Simple_repeat Simple_repeat 1 28 0 6 706 459 0 0 0 chr12 15910971 15911022 -105346508 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 6 706 212 0 36 0 chr12 15911022 15911049 -105346481 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 706 360 0 0 0 chr12 15911466 15911506 -105346024 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 706 257 265 294 6 chr12 15911620 15911783 -105345747 + B4A SINE B4 28 237 -55 6 706 495 0 0 0 chr12 15912061 15912116 -105345414 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 706 305 141 14 0 chr12 15912116 15912187 -105345343 + GA-rich Low_complexity Low_complexity 1 72 0 6 706 201 191 14 42 chr12 15912187 15912258 -105345272 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 6 706 486 224 17 0 chr12 15914156 15914272 -105343258 - B3A SINE B2 -80 118 1 6 706 25 0 0 0 chr12 15914330 15914355 -105343175 + AT_rich Low_complexity Low_complexity 1 25 0 6 706 714 293 36 36 chr12 15914966 15915217 -105342313 + Lx8 LINE L1 6753 7003 -470 6 706 3744 84 2 0 chr12 15915211 15915699 -105341831 - L1_Mus1 LINE L1 -224 5659 5171 6 706 7179 64 2 22 chr12 15915697 15916634 -105340896 + L1_Mus1 LINE L1 5661 6567 0 6 706 318 394 16 5 chr12 15916631 15916825 -105340705 + Lx8 LINE L1 6990 7185 -288 6 706 218 308 0 0 chr12 15917763 15917815 -105339715 + polypyrimidine Low_complexity Low_complexity 2 53 0 6 706 1375 191 102 48 chr12 15918149 15918388 -105339142 + ORR1D1 LTR MaLR 1 252 -122 6 706 216 0 0 0 chr12 15918388 15918412 -105339118 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 6 706 1375 191 102 48 chr12 15918412 15918525 -105339005 + ORR1D1 LTR MaLR 253 371 -3 6 706 311 339 53 27 chr12 15919095 15919283 -105338247 - LTR33A_ LTR ERVL -223 308 116 6 706 201 147 0 0 chr12 15919901 15919935 -105337595 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 706 474 321 102 16 chr12 15919943 15920199 -105337331 - B4A SINE B4 -12 280 3 6 706 243 27 27 0 chr12 15920265 15920302 -105337228 - ORR1D2 LTR MaLR -3 367 330 6 706 923 265 112 12 chr12 15920275 15920615 -105336915 - MTD LTR MaLR -14 405 18 6 706 314 268 30 30 chr12 15920704 15920804 -105336726 - B4 SINE B4 -191 101 2 6 706 2775 110 36 14 chr12 15920823 15921264 -105336266 - RLTR11B LTR ERVK -2 451 1 6 706 231 279 14 14 chr12 15921605 15921674 -105335856 + B4 SINE B4 9 77 -215 6 706 219 139 0 0 chr12 15922794 15922830 -105334700 + (T)n Simple_repeat Simple_repeat 1 36 0 6 706 1145 56 0 14 chr12 15922832 15922978 -105334552 - B1_Mus1 SINE Alu 0 148 5 6 706 182 318 128 20 chr12 15923115 15923311 -105334219 - MIRb SINE MIR -49 219 3 6 706 425 209 88 0 chr12 15923729 15923820 -105333710 + RSINE1 SINE B4 3 101 -64 6 706 527 311 79 14 chr12 15925063 15925278 -105332252 + L1MEc LINE L1 590 818 -5582 6 706 359 272 74 17 chr12 15925290 15925466 -105332064 + L1MEc LINE L1 898 1083 -5317 6 706 26 50 0 0 chr12 15925568 15925608 -105331922 + AT_rich Low_complexity Low_complexity 1 40 0 6 706 3433 35 2 0 chr12 15925760 15926155 -105331375 - MTA_Mm LTR MaLR 0 396 1 6 706 30 0 0 0 chr12 15926276 15926306 -105331224 + AT_rich Low_complexity Low_complexity 1 30 0 6 706 605 281 108 76 chr12 15926745 15927488 -105330042 + L1MEc LINE L1 5130 5917 -435 6 706 371 269 68 15 chr12 15927496 15927628 -105329902 + B1F1 SINE Alu 11 149 0 6 706 322 248 78 10 chr12 15927637 15927739 -105329791 + ID4_ SINE ID 5 113 -39 6 706 353 218 18 36 chr12 15927919 15928047 -105329483 + RMER17D LTR ERVK 256 382 -507 6 706 1873 208 147 106 chr12 15928047 15928634 -105328896 + RMER19C LTR ERVK 1 611 0 6 706 353 218 18 36 chr12 15928634 15928729 -105328801 + RMER17D LTR ERVK 383 475 -414 6 706 305 24 24 0 chr12 15928740 15928782 -105328748 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 706 892 157 0 13 chr12 15929058 15929207 -105328323 - B1_Mus1 SINE Alu 0 148 2 6 706 241 308 22 11 chr12 15929459 15929551 -105327979 - MER47B DNA MER2_type -274 144 52 6 706 196 350 38 28 chr12 15930136 15930242 -105327288 + MIRb SINE MIR 136 242 -26 6 706 201 121 0 0 chr12 15930662 15930695 -105326835 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 6 706 27 29 0 0 chr12 15932821 15932855 -105324675 + AT_rich Low_complexity Low_complexity 1 34 0 6 706 1243 70 0 6 chr12 15932855 15933027 -105324503 - L1_Mus1 LINE L1 0 6567 6397 6 706 198 0 0 0 chr12 15934600 15934622 -105322908 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 706 353 22 22 0 chr12 15934622 15934668 -105322862 + (CAAAA)n Simple_repeat Simple_repeat 5 51 0 6 706 339 298 41 146 chr12 15934680 15934947 -105322583 + B4A SINE B4 42 280 -12 6 706 249 57 0 0 chr12 15935005 15935040 -105322490 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 706 531 176 0 23 chr12 15935060 15935188 -105322342 + GA-rich Low_complexity Low_complexity 2 126 0 6 706 1599 5 0 0 chr12 15935188 15935404 -105322126 + (GAA)n Simple_repeat Simple_repeat 1 216 0 6 706 813 323 78 14 chr12 15935521 15935879 -105321651 + MLT1C LTR MaLR 21 401 -66 6 706 379 281 25 0 chr12 15936293 15936414 -105321116 - MLT1B LTR MaLR -26 364 241 6 706 311 312 90 28 chr12 15936493 15936671 -105320859 - MLT1B LTR MaLR -275 192 4 6 706 484 42 0 27 chr12 15936913 15936986 -105320544 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 706 180 400 40 23 chr12 15939143 15939317 -105318213 + MER5B DNA MER1_type 1 177 -1 6 706 396 0 0 0 chr12 15939534 15939578 -105317952 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 706 315 0 0 0 chr12 15939578 15939612 -105317918 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 706 211 297 0 0 chr12 15939612 15939686 -105317844 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 706 349 87 28 28 chr12 15939690 15939761 -105317769 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 6 706 360 0 0 0 chr12 15939775 15939815 -105317715 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 706 345 345 7 45 chr12 15939816 15939971 -105317559 - RSINE1 SINE B4 -14 151 3 6 706 205 392 13 26 chr12 15940296 15940448 -105317082 + MIRb SINE MIR 12 161 -107 6 706 483 308 52 58 chr12 15942167 15942494 -105315036 - ORR1E LTR MaLR -32 327 3 6 706 1101 16 0 0 chr12 15942738 15942865 -105314665 + (TCTCCC)n Simple_repeat Simple_repeat 1 127 0 6 706 3989 43 2 0 chr12 15943316 15943786 -105313744 - L1Md_F3 LINE L1 -14 6570 6100 6 706 385 267 75 96 chr12 15944083 15944282 -105313248 + B4 SINE B4 24 218 -74 6 706 2363 51 65 0 chr12 15945011 15945461 -105312069 - L1_Mus1 LINE L1 0 6567 6253 6 706 602 294 20 77 chr12 15946030 15946329 -105311201 - Kanga2_a DNA Tc2 -505 383 102 6 706 487 383 15 15 chr12 15946673 15946933 -105310597 - LTR40a LTR ERVL -145 374 115 6 706 456 316 105 35 chr12 15947059 15947629 -105309901 + L1MC4a LINE L1 5654 6263 -1619 6 706 388 313 121 46 chr12 15947718 15948023 -105309507 - MER58B DNA MER1_type -13 328 1 6 706 1198 286 10 36 chr12 15949328 15949712 -105307818 - MTE2b LTR MaLR -5 374 1 6 706 24 32 0 0 chr12 15950727 15950758 -105306772 + AT_rich Low_complexity Low_complexity 1 31 0 6 706 295 219 173 14 chr12 15951329 15951468 -105306062 - MER2 DNA MER2_type -93 252 92 6 706 592 299 138 49 chr12 15952046 15952394 -105305136 - MTE2a LTR MaLR 0 379 1 6 706 480 86 0 0 chr12 15952855 15952925 -105304605 + (CTA)n Simple_repeat Simple_repeat 2 71 0 6 706 296 327 74 6 chr12 15952925 15953088 -105304442 + B3 SINE B2 43 216 0 6 706 227 300 14 28 chr12 15953229 15953301 -105304229 + MLT1B LTR MaLR 253 323 -67 6 706 389 313 85 60 chr12 15954150 15954466 -105303064 - HERV16-int LTR ERVL -3099 1897 1574 6 706 522 0 0 0 chr12 15955054 15955112 -105302418 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 706 386 234 0 13 chr12 15955116 15955194 -105302336 + ID4_ SINE ID 5 81 -2 6 706 759 100 0 0 chr12 15955506 15955616 -105301914 + (GA)n Simple_repeat Simple_repeat 1 110 0 6 706 216 0 0 0 chr12 15956430 15956454 -105301076 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 706 312 94 0 0 chr12 15956988 15957041 -105300489 + (T)n Simple_repeat Simple_repeat 1 53 0 6 706 525 272 42 24 chr12 15957294 15957460 -105300070 + B3A SINE B2 9 177 -21 6 706 324 0 0 0 chr12 15957509 15957545 -105299985 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 6 706 25 51 0 0 chr12 15958170 15958209 -105299321 + AT_rich Low_complexity Low_complexity 1 39 0 6 706 2062 164 58 8 chr12 15959230 15959623 -105297907 - MTC LTR MaLR -8 413 1 6 706 1224 223 48 23 chr12 15959684 15960045 -105297485 - MTD LTR MaLR -14 386 1 6 706 1115 82 0 7 chr12 15960103 15960243 -105297287 + B1_Mus1 SINE Alu 1 140 -8 6 706 900 94 0 0 chr12 15960243 15960371 -105297159 + (GGAAA)n Simple_repeat Simple_repeat 3 130 0 6 706 294 29 0 0 chr12 15961274 15961309 -105296221 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 706 1268 135 5 5 chr12 15961309 15961517 -105296013 - Lx3A LINE L1 -13 6968 6761 6 706 280 260 0 27 chr12 15961535 15961610 -105295920 + CT-rich Low_complexity Low_complexity 4 76 0 6 706 210 375 0 0 chr12 15961667 15961731 -105295799 - PB1D10 SINE Alu -38 79 16 7 706 515 312 118 4 chr12 15962278 15962516 -105295014 + B4A SINE B4 27 291 -1 7 706 252 0 0 0 chr12 15962521 15962549 -105294981 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 706 295 322 0 52 chr12 15962829 15963022 -105294508 - L1M6 LINE L1 -4713 1783 1601 7 706 759 90 0 0 chr12 15963213 15963335 -105294195 + (TG)n Simple_repeat Simple_repeat 1 122 0 7 706 596 337 34 34 chr12 15963353 15963645 -105293885 - B4A SINE B4 0 292 1 7 706 789 305 68 17 chr12 15964056 15964609 -105292921 - L1MA5 LINE L1 -6 6294 5692 7 706 243 284 40 79 chr12 15964794 15964808 -105292722 - ID_B1 SINE B4 -1 223 103 7 706 326 279 54 9 chr12 15964808 15964920 -105292610 - B1F1 SINE Alu -11 138 22 7 706 480 343 4 0 chr12 15966007 15966279 -105291251 + (TG)n Simple_repeat Simple_repeat 1 273 0 7 706 583 267 73 66 chr12 15966283 15966354 -105291176 - B4A SINE B4 0 292 220 7 706 1144 69 19 0 chr12 15966354 15966513 -105291017 - L1_Mus2 LINE L1 0 6566 6405 7 706 963 0 0 0 chr12 15966515 15966622 -105290908 + (GAA)n Simple_repeat Simple_repeat 2 108 0 7 706 583 267 73 66 chr12 15966622 15966836 -105290694 - B4A SINE B4 -73 219 8 7 706 287 393 32 63 chr12 15967643 15968023 -105289507 - MLT1F-int LTR MaLR -1 1488 1121 7 706 490 293 27 136 chr12 15968155 15968367 -105289163 - L1M3 LINE L1 -390 5799 5588 7 706 243 0 0 0 chr12 15968367 15968394 -105289136 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 706 490 293 27 136 chr12 15968394 15968623 -105288907 - L1M3 LINE L1 -602 5587 5406 7 706 429 20 0 0 chr12 15968661 15968711 -105288819 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 706 414 0 0 0 chr12 15968711 15968756 -105288774 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 706 947 288 78 48 chr12 15969197 15969700 -105287830 + L1M3 LINE L1 4844 5361 -779 7 706 22 35 0 0 chr12 15969794 15969823 -105287707 + AT_rich Low_complexity Low_complexity 1 29 0 7 706 528 296 0 58 chr12 15969874 15970046 -105287484 - RSINE1 SINE B4 0 165 4 7 706 216 0 0 0 chr12 15970450 15970474 -105287056 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 706 9429 127 11 4 chr12 15971520 15973160 -105284370 + Lx4A LINE L1 5396 7053 -5 7 706 951 35 0 0 chr12 15973161 15973276 -105284254 + (CAGA)n Simple_repeat Simple_repeat 2 116 0 7 706 593 199 85 95 chr12 15973729 15973753 -105283777 - B3A SINE B2 0 198 174 7 706 243 0 0 0 chr12 15973753 15973780 -105283750 + (TATG)n Simple_repeat Simple_repeat 4 30 0 7 706 593 199 85 95 chr12 15973780 15973955 -105283575 - B3A SINE B2 -25 173 1 7 706 774 105 0 0 chr12 15975472 15975596 -105281934 + MusHAL1 LINE L1 844 967 -1745 7 706 7489 102 27 5 chr12 15975585 15976936 -105280594 + L1_Mus4 LINE L1 5252 6635 -1 7 706 714 307 5 45 chr12 15977876 15978077 -105279453 - B4A SINE B4 -99 193 1 7 706 445 296 91 48 chr12 15978617 15978848 -105278682 + MLT1B LTR MaLR 11 251 -139 7 706 294 50 0 0 chr12 15979860 15979900 -105277630 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 706 882 270 30 34 chr12 15979942 15980176 -105277354 - B4 SINE B4 -22 270 38 7 706 27 0 0 0 chr12 15980198 15980225 -105277305 + AT_rich Low_complexity Low_complexity 1 27 0 7 706 22 35 0 0 chr12 15980602 15980631 -105276899 + AT_rich Low_complexity Low_complexity 1 29 0 7 706 657 0 0 0 chr12 15980668 15980741 -105276789 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 706 795 321 72 37 chr12 15980741 15981197 -105276333 - Lx8 LINE L1 -35 7438 6967 7 706 1256 181 22 5 chr12 15981364 15981586 -105275944 - URR1A DNA MER1_type 0 226 1 7 706 527 259 77 28 chr12 15981609 15981752 -105275778 + B3A SINE B2 2 151 -47 7 706 405 86 0 0 chr12 15981757 15981815 -105275715 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 706 2011 158 43 39 chr12 15981897 15982085 -105275445 + MTC LTR MaLR 1 188 -233 7 706 5328 24 13 2 chr12 15982085 15982701 -105274829 + L1Md_F3 LINE L1 5962 6584 0 7 706 2011 158 43 39 chr12 15982701 15982926 -105274604 + MTC LTR MaLR 189 416 -5 7 706 456 328 138 23 chr12 15982925 15983272 -105274258 - Arthur1 DNA Tip100 -309 3638 3252 7 706 999 286 95 6 chr12 15983286 15983624 -105273906 - Arthur1 DNA Tip100 -3228 719 352 7 706 244 226 50 34 chr12 15983730 15983849 -105273681 + (CAATA)n Simple_repeat Simple_repeat 4 124 0 7 706 234 259 19 0 chr12 15985127 15985181 -105272349 - LTR33B LTR ERVL -382 121 67 7 706 1151 75 0 20 chr12 15985765 15985915 -105271615 - B1_Mus1 SINE Alu 0 148 2 7 706 433 303 39 28 chr12 15987162 15987342 -105270188 + B4A SINE B4 2 183 -109 7 706 214 253 101 67 chr12 15989390 15989479 -105268051 - PB1D10 SINE Alu -25 92 1 7 706 317 130 19 0 chr12 15989553 15989607 -105267923 - HAL1-3A_ME LINE L1 -828 2030 1976 7 706 414 203 34 7 chr12 15989608 15989757 -105267773 + (TG)n Simple_repeat Simple_repeat 2 154 0 7 706 968 242 24 9 chr12 15989849 15990062 -105267468 - B3 SINE B2 0 216 1 7 88 324 0 0 0 chr12 15990777 15990813 -105266717 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 707 222 347 27 0 chr12 15991562 15991637 -105265893 + MER5A DNA MER1_type 33 109 -80 7 707 382 280 55 23 chr12 15991754 15991882 -105265648 + B4 SINE B4 157 288 -4 7 707 468 308 87 55 chr12 15991940 15992194 -105265336 + B4 SINE B4 6 267 -25 7 707 509 335 12 24 chr12 15993895 15994060 -105263470 + RSINE1 SINE B4 1 163 -2 7 707 372 43 0 0 chr12 15994076 15994122 -105263408 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 707 26 0 0 0 chr12 15995048 15995074 -105262456 + AT_rich Low_complexity Low_complexity 1 26 0 7 707 574 237 72 0 chr12 15995223 15995362 -105262168 - B3A SINE B2 -47 151 3 7 707 634 177 0 12 chr12 15995713 15995873 -105261657 + (TG)n Simple_repeat Simple_repeat 1 158 0 7 707 1020 253 14 40 chr12 15995873 15996170 -105261360 - B4A SINE B4 0 292 4 7 707 314 329 140 37 chr12 15996567 15996895 -105260635 - Lx8 LINE L1 0 7473 7112 7 707 206 88 59 0 chr12 15997396 15997430 -105260100 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 7 707 1420 283 80 89 chr12 15998118 15998290 -105259240 - L1M2 LINE L1 -932 5211 5083 7 707 2073 159 47 0 chr12 15998290 15998654 -105258876 - Lx3C LINE L1 -2 6974 6594 7 707 1420 283 80 89 chr12 15998654 15999508 -105258022 - L1M2 LINE L1 -1061 5082 4194 7 707 287 306 0 101 chr12 16000197 16000306 -105257224 - PB1D10 SINE Alu -19 98 1 1 707 658 225 132 36 chr12 16000729 16000895 -105256635 - B3A SINE B2 -16 182 1 2 707 428 51 0 17 chr12 16001052 16001112 -105256418 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 3 707 258 250 194 29 chr12 16001341 16001547 -105255983 + Kanga1b DNA Tc2 419 658 -121 4 707 1262 62 0 0 chr12 16001556 16001701 -105255829 + B1_Mus2 SINE Alu 3 147 0 5 707 24 0 0 0 chr12 16001701 16001725 -105255805 + AT_rich Low_complexity Low_complexity 1 24 0 6 707 316 343 94 48 chr12 16002002 16002316 -105255214 - MLT2B3 LTR ERVL -115 400 61 7 707 1820 177 92 6 chr12 16002486 16002821 -105254709 - MTC LTR MaLR -5 416 53 8 707 1536 158 100 21 chr12 16002821 16003111 -105254419 - Lx4A LINE L1 -4 7054 6742 9 707 438 205 0 0 chr12 16003111 16003189 -105254341 - MTC LTR MaLR -327 94 17 8 707 332 271 109 86 chr12 16003503 16003713 -105253817 - MER44A DNA MER2_type -124 215 1 1 707 1055 224 35 4 chr12 16004897 16005126 -105252404 + Lx7 LINE L1 7432 7667 -29 1 707 277 327 9 9 chr12 16005523 16005631 -105251899 + GA-rich Low_complexity Low_complexity 1 108 0 1 707 483 238 18 45 chr12 16005648 16005758 -105251772 - RSINE1 SINE B4 -48 117 11 1 707 254 328 0 0 chr12 16005867 16005931 -105251599 + L2b LINE L2 3296 3359 -16 1 707 435 234 15 48 chr12 16006870 16007000 -105250530 + B1_Mur1 SINE Alu 3 149 0 1 707 820 304 78 32 chr12 16008818 16009165 -105248365 - MTE2a LTR MaLR 0 379 17 1 707 213 65 0 0 chr12 16009859 16009890 -105247640 + (A)n Simple_repeat Simple_repeat 1 31 0 1 707 1403 282 65 0 chr12 16010108 16010491 -105247039 - MTD LTR MaLR -1 418 11 1 707 571 279 148 21 chr12 16010679 16010784 -105246746 + L1MA6 LINE L1 5491 5612 -556 1 707 315 0 0 0 chr12 16010784 16010819 -105246711 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 707 571 269 96 20 chr12 16010819 16011130 -105246400 + L1MA6 LINE L1 5613 5983 -317 1 707 1047 236 69 138 chr12 16011157 16011564 -105245966 - MTE2a LTR MaLR 0 379 1 2 707 663 254 84 4 chr12 16011564 16011789 -105245741 + L1MA6 LINE L1 6032 6274 -26 1 707 467 292 66 30 chr12 16011875 16012041 -105245489 + MLT1J2 LTR MaLR 25 196 -252 2 707 397 228 168 7 chr12 16012060 16012197 -105245333 - MTE2a LTR MaLR -24 355 197 2 707 411 271 31 0 chr12 16012424 16012520 -105245010 + PB1D7 SINE Alu 13 111 -9 2 707 1123 271 53 98 chr12 16012657 16013054 -105244476 + MTE2a LTR MaLR 1 379 0 2 707 227 336 62 28 chr12 16013725 16013869 -105243661 + MIRb SINE MIR 3 151 -117 2 707 210 71 0 0 chr12 16016652 16016680 -105240850 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2 707 748 299 20 5 chr12 16017612 16017814 -105239716 + B4A SINE B4 19 223 -69 2 707 811 257 0 11 chr12 16017822 16018011 -105239519 + B3 SINE B2 16 202 -14 2 707 246 62 0 0 chr12 16018011 16018043 -105239487 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 3 707 345 246 43 0 chr12 16018043 16018112 -105239418 + B4A SINE B4 209 280 -12 2 707 276 77 0 0 chr12 16019408 16019447 -105238083 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 3 707 571 262 89 21 chr12 16019552 16019649 -105237881 + RMER17C LTR ERVK 1 97 -313 3 707 1620 10 8 8 chr12 16019649 16020165 -105237365 + (TTCTC)n Simple_repeat Simple_repeat 1 516 0 3 707 571 225 106 58 chr12 16020165 16020375 -105237155 + RMER17C LTR ERVK 98 351 -59 3 707 602 296 26 21 chr12 16021134 16021313 -105236217 + B3 SINE B2 1 182 -16 3 707 339 25 0 0 chr12 16021313 16021353 -105236177 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 3 707 581 296 26 21 chr12 16021353 16021366 -105236164 + B3A SINE B2 183 194 -4 3 707 265 231 224 28 chr12 16021447 16021554 -105235976 + ID_B1 SINE B4 79 206 -18 3 707 1125 78 0 0 chr12 16022281 16022434 -105235096 + (CGTG)n Simple_repeat Simple_repeat 2 154 0 3 707 232 214 0 18 chr12 16022507 16022564 -105234966 - RLTR13D5 LTR ERVK -429 594 539 3 707 261 0 0 0 chr12 16024159 16024188 -105233342 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 707 219 276 160 9 chr12 16025163 16025269 -105232261 + MIR SINE MIR 2 123 -139 4 707 319 293 82 30 chr12 16025331 16025491 -105232039 + L2c LINE L2 3212 3406 -20 4 707 486 185 0 0 chr12 16026018 16026042 -105231488 + A-rich Low_complexity Low_complexity 1 24 0 4 707 1218 69 0 0 chr12 16026042 16026186 -105231344 + B1_Mus2 SINE Alu 4 147 0 4 707 486 185 0 0 chr12 16026186 16026269 -105231261 + A-rich Low_complexity Low_complexity 25 107 0 4 707 381 86 0 0 chr12 16026286 16026344 -105231186 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 707 734 298 78 0 chr12 16026365 16026583 -105230947 - B4 SINE B4 -26 266 32 4 707 227 333 76 57 chr12 16026665 16026770 -105230760 - ID_B1 SINE B4 -115 109 3 4 707 351 187 70 61 chr12 16026884 16026898 -105230632 - L1MA5A LINE L1 -63 6237 6228 4 707 333 0 0 0 chr12 16026898 16026935 -105230595 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 707 364 187 97 64 chr12 16026935 16027114 -105230416 - L1MA5A LINE L1 -73 6227 6039 4 707 234 351 69 17 chr12 16027314 16027347 -105230183 - ID_B1 SINE B4 -101 123 2 5 707 274 288 24 36 chr12 16027347 16027430 -105230100 - ID4_ SINE ID 0 83 2 5 707 1007 312 80 15 chr12 16028104 16028644 -105228886 - Lx8 LINE L1 -2 7471 6897 5 707 3864 64 2 2 chr12 16029142 16029610 -105227920 - L1_Mus4 LINE L1 -2 6634 6167 5 707 314 315 53 35 chr12 16029738 16029953 -105227577 - ID_B1 SINE B4 -37 187 2 5 707 381 291 11 11 chr12 16030933 16031020 -105226510 - RSINE1 SINE B4 -76 89 3 5 707 351 0 0 0 chr12 16031399 16031438 -105226092 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 707 24 0 0 0 chr12 16031445 16031469 -105226061 + AT_rich Low_complexity Low_complexity 1 24 0 5 707 261 309 0 21 chr12 16031739 16031835 -105225695 + BC1_Mm scRNA scRNA 11 104 -48 5 707 880 306 22 18 chr12 16032161 16032434 -105225096 + B4A SINE B4 1 274 -18 5 707 35 24 0 0 chr12 16032481 16032523 -105225007 + AT_rich Low_complexity Low_complexity 1 42 0 6 707 331 365 70 8 chr12 16033217 16033474 -105224056 + L1MD LINE L1 2492 2764 -3382 6 707 1069 264 91 31 chr12 16033515 16033867 -105223663 - MLT1B LTR MaLR -8 382 10 6 707 459 298 144 48 chr12 16033871 16034266 -105223264 + L1MC LINE L1 2793 3225 -2921 6 707 385 229 79 60 chr12 16034720 16034963 -105222567 + L1MD LINE L1 3581 3825 -2315 6 707 600 289 0 38 chr12 16035009 16035167 -105222363 + B3A SINE B2 1 152 -46 6 707 603 0 0 0 chr12 16035175 16035242 -105222288 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 707 327 49 0 0 chr12 16035245 16035286 -105222244 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 707 372 298 69 28 chr12 16035434 16035553 -105221977 + MTEa LTR MaLR 3 124 -255 6 707 1175 105 0 34 chr12 16035553 16035731 -105221799 + B2_Mm2 SINE B2 5 176 -19 6 707 372 298 69 28 chr12 16035731 16035756 -105221774 + MTEa LTR MaLR 125 153 -226 6 707 7915 71 2 6 chr12 16035756 16037138 -105220392 + L1_Mus1 LINE L1 5190 6567 0 6 707 1013 279 28 63 chr12 16037160 16037235 -105220295 + MTEb LTR MaLR 103 179 -200 7 707 1158 92 0 0 chr12 16037235 16037376 -105220154 + B1_Mus2 SINE Alu 1 141 -6 7 707 375 23 0 0 chr12 16037382 16037426 -105220104 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 707 1013 279 28 63 chr12 16037426 16037573 -105219957 + MTEb LTR MaLR 183 322 -57 7 707 4231 95 136 7 chr12 16037573 16038168 -105219362 - Lx2 LINE L1 -3 6994 6323 7 707 1013 279 28 63 chr12 16038168 16038224 -105219306 + MTEb LTR MaLR 323 378 -1 7 707 841 296 35 76 chr12 16038244 16038559 -105218971 + MTE2a LTR MaLR 2 303 -76 7 707 1402 245 26 65 chr12 16038584 16038968 -105218562 - ORR1D2 LTR MaLR 0 370 2 7 707 558 271 144 52 chr12 16039086 16039608 -105217922 + L1MD LINE L1 4646 5215 -931 6 707 260 321 30 45 chr12 16039627 16039829 -105217701 + L1M5 LINE L1 5273 5471 -708 7 707 320 363 22 22 chr12 16039839 16039977 -105217553 + B1F SINE Alu 1 138 -11 7 707 225 256 60 12 chr12 16040223 16040306 -105217224 + L1MC LINE L1 5692 5778 -2007 7 707 656 298 179 21 chr12 16040339 16040630 -105216900 - MLT1D LTR MaLR -26 479 143 7 707 1088 128 6 0 chr12 16042719 16042898 -105214632 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 707 253 82 41 0 chr12 16042898 16042947 -105214583 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 8 707 642 262 50 0 chr12 16043830 16043971 -105213559 + RSINE1 SINE B4 17 164 -1 8 707 303 28 0 0 chr12 16043978 16044014 -105213516 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 707 21 0 0 0 chr12 16044354 16044375 -105213155 + AT_rich Low_complexity Low_complexity 1 21 0 8 707 455 320 40 38 chr12 16044652 16044999 -105212531 + L1MC3 LINE L1 6042 6389 -1396 8 707 387 0 0 0 chr12 16045001 16045044 -105212486 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 707 741 311 57 26 chr12 16045112 16045533 -105211997 + L1MC3 LINE L1 6415 6891 -991 8 707 311 192 14 0 chr12 16045533 16045606 -105211924 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 707 3878 14 0 9 chr12 16045697 16046135 -105211395 - L1Md_T LINE L1 -42 5841 5408 8 707 6585 38 0 0 chr12 16046135 16046870 -105210660 + L1Md_T LINE L1 5848 6582 0 8 707 279 171 40 0 chr12 16047263 16047339 -105210191 + (TA)n Simple_repeat Simple_repeat 2 80 0 8 707 848 10 0 10 chr12 16047853 16047955 -105209575 + (TG)n Simple_repeat Simple_repeat 2 102 0 9 707 223 359 45 30 chr12 16048823 16048955 -105208575 - MIR SINE MIR -80 182 49 9 707 527 274 131 0 chr12 16049888 16050063 -105207467 + B3A SINE B2 1 198 0 9 707 26 0 0 0 chr12 16050063 16050089 -105207441 + AT_rich Low_complexity Low_complexity 1 26 0 9 707 24 0 0 0 chr12 16050301 16050325 -105207205 + AT_rich Low_complexity Low_complexity 1 24 0 9 707 263 270 91 45 chr12 16051032 16051164 -105206366 - MLT2B4 LTR ERVL -41 518 381 9 707 281 309 106 13 chr12 16051215 16051366 -105206164 - MLT2B4 LTR ERVL -388 168 4 9 707 288 0 0 0 chr12 16051506 16051538 -105205992 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 707 874 90 15 0 chr12 16052052 16052186 -105205344 + (TA)n Simple_repeat Simple_repeat 2 137 0 9 707 341 173 12 62 chr12 16052463 16052623 -105204907 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 9 707 411 73 0 0 chr12 16053938 16053993 -105203537 + (TGG)n Simple_repeat Simple_repeat 2 56 0 9 707 250 214 28 14 chr12 16054000 16054071 -105203459 + GA-rich Low_complexity Low_complexity 1 72 0 1 707 196 337 112 0 chr12 16055066 16055155 -105202375 - L2a LINE L2 -9 3417 3319 1 707 203 108 45 30 chr12 16055284 16055351 -105202179 + (TTATA)n Simple_repeat Simple_repeat 3 70 0 1 707 769 67 0 0 chr12 16055351 16055456 -105202074 + L1_Mus1 LINE L1 6462 6566 -1 1 707 941 255 10 5 chr12 16055563 16055760 -105201770 - B3A SINE B2 0 198 1 1 707 498 160 22 49 chr12 16055933 16056117 -105201413 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1 707 234 0 0 0 chr12 16056124 16056150 -105201380 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 707 573 15 0 0 chr12 16056150 16056215 -105201315 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 707 384 235 0 0 chr12 16056217 16056285 -105201245 - ID4_ SINE ID -15 68 1 1 707 232 290 32 21 chr12 16056357 16056452 -105201078 - Charlie4a DNA MER1_type -270 238 143 1 707 341 262 6 28 chr12 16057706 16057883 -105199647 + (TATATG)n Simple_repeat Simple_repeat 6 178 0 1 707 756 67 0 0 chr12 16058997 16059102 -105198428 + B1_Mus1 SINE Alu 38 142 -6 1 707 315 0 0 0 chr12 16059105 16059140 -105198390 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 707 316 343 46 64 chr12 16059365 16059583 -105197947 - MLT1I LTR MaLR -123 288 75 1 707 232 301 82 141 chr12 16059750 16059920 -105197610 - MLT1A LTR MaLR 0 374 215 1 707 1109 254 44 64 chr12 16063090 16063451 -105194079 + ORR1D2 LTR MaLR 17 370 0 1 707 300 249 153 85 chr12 16063466 16063655 -105193875 - Lx8 LINE L1 -4 7469 7268 1 707 228 224 0 0 chr12 16063807 16063856 -105193674 - L2a LINE L2 -9 3417 3369 1 707 24 67 0 0 chr12 16064176 16064221 -105193309 + AT_rich Low_complexity Low_complexity 1 45 0 1 707 335 226 10 83 chr12 16064279 16064336 -105193194 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 707 459 0 0 0 chr12 16064336 16064387 -105193143 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1 707 341 307 22 28 chr12 16064387 16064589 -105192941 + (TG)n Simple_repeat Simple_repeat 1 200 0 1 707 258 291 10 0 chr12 16065510 16065707 -105191823 + (TATATG)n Simple_repeat Simple_repeat 1 199 0 1 707 325 309 8 0 chr12 16065710 16065836 -105191694 + (TATG)n Simple_repeat Simple_repeat 4 130 0 1 707 237 275 11 6 chr12 16065841 16066020 -105191510 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 707 242 317 32 32 chr12 16066262 16066386 -105191144 - L1M4 LINE L1 -1114 5032 4909 1 707 255 214 0 0 chr12 16067246 16067316 -105190214 + CT-rich Low_complexity Low_complexity 1 70 0 1 707 283 293 20 10 chr12 16067530 16067630 -105189900 + CT-rich Low_complexity Low_complexity 1 101 0 1 707 231 287 37 122 chr12 16067946 16068053 -105189477 + MTEa LTR MaLR 1 98 -281 1 707 361 270 86 44 chr12 16068549 16068763 -105188767 + MTD LTR MaLR 6 260 -159 1 707 416 256 39 31 chr12 16068836 16068965 -105188565 + MTD LTR MaLR 282 411 -8 1 707 1662 172 124 12 chr12 16070091 16070421 -105187109 + ORR1B2 LTR MaLR 1 367 0 1 707 686 234 220 4 chr12 16070711 16070947 -105186583 + B4A SINE B4 6 292 0 1 707 183 254 0 0 chr12 16070947 16071010 -105186520 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 707 1810 62 33 4 chr12 16071149 16071393 -105186137 - L1_Mus1 LINE L1 0 6567 6317 1 707 477 50 0 0 chr12 16071662 16071722 -105185808 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 707 180 0 0 0 chr12 16072082 16072102 -105185428 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 707 303 333 42 0 chr12 16072508 16072676 -105184854 + L1MA8 LINE L1 5635 5809 -482 1 707 716 175 0 23 chr12 16072771 16072900 -105184630 - B1_Mur3 SINE Alu -15 134 9 1 707 343 241 8 33 chr12 16072921 16073041 -105184489 + Lx8 LINE L1 7355 7471 -2 1 707 726 299 112 7 chr12 16073083 16073501 -105184029 + L1MA8 LINE L1 5830 6291 0 1 707 267 54 0 0 chr12 16073736 16073773 -105183757 + (T)n Simple_repeat Simple_repeat 1 37 0 1 707 787 47 0 0 chr12 16073773 16073879 -105183651 - B1_Mm SINE Alu 0 147 42 1 707 219 229 0 0 chr12 16074094 16074155 -105183375 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 707 329 298 60 22 chr12 16074228 16074362 -105183168 + B4 SINE B4 154 292 0 1 707 242 264 0 14 chr12 16074370 16074443 -105183087 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 707 715 170 7 7 chr12 16074649 16074803 -105182727 + GA-rich Low_complexity Low_complexity 3 156 0 1 707 1946 227 41 6 chr12 16075124 16075620 -105181910 + Lx2B LINE L1 6443 7054 -4 1 707 289 267 0 0 chr12 16076308 16076383 -105181147 - RMER30 DNA MER1_type -25 177 103 1 707 782 291 48 40 chr12 16076455 16076727 -105180803 - B4 SINE B4 -13 279 6 1 707 256 262 75 0 chr12 16076740 16076820 -105180710 - RMER30 DNA MER1_type -110 92 7 1 707 509 273 37 27 chr12 16076960 16077148 -105180382 + MLT1C LTR MaLR 46 235 -232 1 707 2162 188 9 29 chr12 16077641 16078086 -105179444 + RMER10A LTR ERVL 1 436 -6 1 707 428 319 7 20 chr12 16078347 16078494 -105179036 - MER3 DNA MER1_type -11 198 54 1 707 318 325 30 16 chr12 16079452 16079639 -105177891 - Cheshire DNA MER1_type -2176 244 49 1 707 1336 46 0 34 chr12 16079697 16079876 -105177654 - L1_Mus1 LINE L1 0 6567 6395 1 707 6839 149 20 2 chr12 16080212 16081915 -105175615 + Lx LINE L1 4930 6653 -1 1 707 471 228 43 9 chr12 16083193 16083308 -105174222 + RMER20B LTR ERVK 1 119 -508 1 707 1176 259 73 28 chr12 16083303 16083661 -105173869 + RMER20B LTR ERVK 230 603 -24 1 707 2370 144 17 3 chr12 16084438 16084800 -105172730 + ORR1B2 LTR MaLR 1 367 0 1 707 36 40 0 0 chr12 16086416 16086466 -105171064 + AT_rich Low_complexity Low_complexity 1 50 0 1 707 1936 318 72 17 chr12 16086853 16087979 -105169551 - L1MA6 LINE L1 -364 5936 4727 1 707 492 48 0 0 chr12 16088465 16088528 -105169002 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 1 707 783 55 0 0 chr12 16089821 16089930 -105167600 + (TC)n Simple_repeat Simple_repeat 1 109 0 1 707 528 59 0 0 chr12 16089930 16089998 -105167532 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 707 207 204 0 0 chr12 16090562 16090606 -105166924 + CT-rich Low_complexity Low_complexity 3 46 0 1 707 187 337 32 43 chr12 16090968 16091061 -105166469 - MIRc SINE MIR -120 148 57 1 707 808 295 30 15 chr12 16091262 16091527 -105166003 + L1M5 LINE L1 5465 5733 -446 1 707 1086 277 31 31 chr12 16091534 16091884 -105165646 + ORR1E LTR MaLR 8 357 -2 1 707 30 0 0 0 chr12 16091958 16091988 -105165542 + AT_rich Low_complexity Low_complexity 1 30 0 1 707 4724 87 12 5 chr12 16091989 16092638 -105164892 - Lx3A LINE L1 -19 6962 6309 1 707 452 325 25 69 chr12 16092638 16092840 -105164690 - B3A SINE B2 -3 195 3 1 707 299 310 147 98 chr12 16092885 16093192 -105164338 - MTEa LTR MaLR 0 379 58 1 707 441 0 0 0 chr12 16093231 16093280 -105164250 + (TAA)n Simple_repeat Simple_repeat 3 51 0 1 707 188 343 112 42 chr12 16094000 16094143 -105163387 + MIRb SINE MIR 69 221 -47 1 707 1592 232 21 31 chr12 16094173 16094556 -105162974 - MTEb LTR MaLR 0 379 1 1 707 540 81 0 0 chr12 16095779 16095853 -105161677 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 1 707 9144 94 25 12 chr12 16095855 16097626 -105159904 - Lx3A LINE L1 -16 6965 5176 1 707 1052 244 88 12 chr12 16097728 16098048 -105159482 + Lx9 LINE L1 7262 7605 -39 1 707 609 285 0 62 chr12 16099885 16100117 -105157413 + B3A SINE B2 1 212 -4 1 707 234 288 67 88 chr12 16100121 16100449 -105157081 + L1MEc LINE L1 2052 2372 -4028 1 707 317 319 96 14 chr12 16100535 16100754 -105156776 + Arthur1C DNA Tip100 38 274 -89 1 707 3170 119 30 0 chr12 16101109 16101570 -105155960 + RMER1B Other Other 591 1065 -1 1 707 522 0 0 0 chr12 16101689 16101747 -105155783 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 707 936 316 10 14 chr12 16101764 16102053 -105155477 - B4A SINE B4 -2 290 3 1 707 248 243 28 14 chr12 16102619 16102690 -105154840 + tRNA-Ala-GCY_ tRNA tRNA 4 75 0 1 707 1217 186 41 128 chr12 16102755 16103144 -105154386 + ORR1C1 LTR MaLR 1 355 -23 1 707 256 317 0 0 chr12 16103306 16103388 -105154142 - ID4 SINE ID 0 83 2 1 707 219 267 66 37 chr12 16104432 16104568 -105152962 + L2 LINE L2 2377 2516 -903 1 707 1276 255 15 100 chr12 16105380 16105789 -105151741 - MTE2a LTR MaLR 0 379 6 1 707 277 177 0 0 chr12 16106188 16106250 -105151280 + L1MEf LINE L1 966 1027 -5173 1 707 434 232 274 0 chr12 16107390 16107558 -105149972 + MT2A LTR ERVL 1 214 -319 1 707 321 204 113 61 chr12 16107553 16107668 -105149862 + MT2A LTR ERVL 413 533 0 1 707 209 296 48 24 chr12 16107927 16108010 -105149520 + MIR SINE MIR 62 146 -116 1 707 21 0 0 0 chr12 16108190 16108211 -105149319 + AT_rich Low_complexity Low_complexity 1 21 0 1 707 801 303 78 22 chr12 16108229 16108499 -105149031 + B4 SINE B4 6 290 -2 1 707 211 309 16 49 chr12 16108707 16108891 -105148639 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 707 227 297 27 90 chr12 16109248 16109359 -105148171 - MER66C LTR ERV1 -278 277 174 1 707 601 294 40 66 chr12 16110027 16110300 -105147230 - MLT2B1 LTR ERVL -235 285 20 1 707 1169 58 0 0 chr12 16110497 16110635 -105146895 - B1_Mus1 SINE Alu -10 138 1 1 707 1331 172 199 3 chr12 16110820 16111117 -105146413 + ORR1B2 LTR MaLR 5 359 -8 1 707 725 277 147 49 chr12 16111231 16111654 -105145876 + MER44B DNA MER2_type 31 510 -40 1 707 337 322 31 72 chr12 16112436 16112630 -105144900 + MLT1G-int LTR MaLR 260 445 -964 1 707 316 319 199 9 chr12 16113100 16113331 -105144199 + MLT1G LTR MaLR 141 415 -176 1 707 657 272 78 5 chr12 16113398 16113616 -105143914 + MTEa LTR MaLR 15 248 -131 1 707 288 338 0 13 chr12 16113682 16113760 -105143770 - MTE2b LTR MaLR -292 87 11 1 707 466 199 218 15 chr12 16114489 16114622 -105142908 + B3A SINE B2 1 160 -38 2 707 252 0 0 0 chr12 16114624 16114652 -105142878 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 707 21 0 0 0 chr12 16114652 16114673 -105142857 + AT_rich Low_complexity Low_complexity 1 21 0 2 707 213 271 0 0 chr12 16115461 16115509 -105142021 + GA-rich Low_complexity Low_complexity 6 53 0 2 707 909 251 30 0 chr12 16116091 16116290 -105141240 + B3 SINE B2 3 207 -9 2 707 180 0 0 0 chr12 16116290 16116310 -105141220 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 707 211 347 53 20 chr12 16119201 16119351 -105138179 + MIRb SINE MIR 75 229 -39 2 707 244 314 0 37 chr12 16119837 16119946 -105137584 + MER2 DNA MER2_type 184 288 -57 2 707 594 264 82 33 chr12 16120345 16120529 -105137001 + B3A SINE B2 1 193 -5 2 707 1687 26 0 0 chr12 16120548 16120740 -105136790 + B2_Mm1a SINE B2 2 193 0 2 707 386 276 143 43 chr12 16120795 16121241 -105136289 + L1M4 LINE L1 4628 5118 -1028 2 707 1162 261 67 28 chr12 16121247 16121605 -105135925 - MTEa LTR MaLR -7 372 1 2 88 496 315 58 22 chr12 16121633 16122008 -105135522 + L1MC LINE L1 5156 5547 -797 2 708 943 235 201 6 chr12 16122634 16122947 -105134583 + ORR1D1 LTR MaLR 1 374 0 2 708 517 287 20 27 chr12 16123493 16123640 -105133890 + RSINE1 SINE B4 1 146 -19 2 708 818 310 15 27 chr12 16123704 16123966 -105133564 + B4A SINE B4 33 291 -1 2 708 216 97 0 0 chr12 16124041 16124072 -105133458 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 2 708 330 292 18 9 chr12 16124795 16124909 -105132621 - PB1D10 SINE Alu -1 116 2 2 708 246 32 0 0 chr12 16126957 16126988 -105130542 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 708 1133 248 39 14 chr12 16127016 16127298 -105130232 - B4 SINE B4 0 292 4 2 708 183 80 0 0 chr12 16127922 16127947 -105129583 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 708 252 143 0 0 chr12 16127947 16127989 -105129541 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 708 288 185 0 18 chr12 16129009 16129064 -105128466 + ID4 SINE ID 14 67 -16 2 708 369 0 0 0 chr12 16129554 16129595 -105127935 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 708 476 304 57 28 chr12 16130960 16131136 -105126394 - B4 SINE B4 -110 182 2 2 708 609 298 56 10 chr12 16131356 16131661 -105125869 + L1M4c LINE L1 2039 2357 -4027 2 708 696 261 26 63 chr12 16131693 16131980 -105125550 + L1MB3 LINE L1 5789 6064 -119 2 708 288 264 126 47 chr12 16131980 16132107 -105125423 + B1F SINE Alu 5 141 -8 2 708 696 261 26 63 chr12 16132107 16132121 -105125409 + L1MB3 LINE L1 6065 6078 -105 2 708 1323 156 4 13 chr12 16132258 16132485 -105125045 - URR1B DNA MER1_type 0 225 1 2 708 397 336 7 35 chr12 16132642 16132784 -105124746 + MTE-int LTR MaLR 1441 1578 -2 2 708 798 282 84 47 chr12 16132812 16133132 -105124398 + MTEa LTR MaLR 43 374 -5 2 708 10610 81 16 0 chr12 16133202 16135322 -105122208 + L1_Mus1 LINE L1 4413 6567 0 2 708 459 253 0 0 chr12 16135324 16135407 -105122123 + B3 SINE B2 48 130 -86 2 708 243 283 104 13 chr12 16135445 16135599 -105121931 + Lx8 LINE L1 7305 7472 -1 2 708 1008 152 178 0 chr12 16136082 16136273 -105121257 + URR1B DNA MER1_type 1 225 0 2 708 288 0 0 0 chr12 16136367 16136399 -105121131 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 708 1500 244 38 14 chr12 16138083 16138449 -105119081 + MTC LTR MaLR 38 412 -9 2 708 694 309 37 37 chr12 16138455 16138727 -105118803 - MLT1B LTR MaLR -15 375 104 2 708 252 278 10 49 chr12 16138963 16139065 -105118465 - MLT1A LTR MaLR -5 403 306 2 708 281 310 25 76 chr12 16139169 16139326 -105118204 - MLT1A LTR MaLR -212 162 14 2 708 271 339 9 9 chr12 16140768 16140881 -105116649 + MER45A DNA Tip100 66 178 0 2 708 953 116 7 0 chr12 16141562 16141717 -105115813 + (TC)n Simple_repeat Simple_repeat 1 156 0 2 708 470 44 29 0 chr12 16141718 16141786 -105115744 + (TATG)n Simple_repeat Simple_repeat 4 73 0 2 708 988 45 15 0 chr12 16141952 16142085 -105115445 + B1_Mus1 SINE Alu 2 136 -12 2 708 233 29 0 29 chr12 16142086 16142121 -105115409 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 708 268 148 0 32 chr12 16142201 16142264 -105115266 + GA-rich Low_complexity Low_complexity 2 62 0 2 708 926 304 53 23 chr12 16144019 16144416 -105113114 - MTD LTR MaLR -10 409 1 2 708 309 263 56 70 chr12 16144416 16144558 -105112972 - MLT1H LTR MaLR -404 145 6 2 708 619 278 67 11 chr12 16145316 16145494 -105112036 - B3A SINE B2 0 198 11 2 708 285 358 33 58 chr12 16146902 16147145 -105110385 + MIRb SINE MIR 20 256 -12 2 708 230 321 139 29 chr12 16147538 16147711 -105109819 + MIR3 SINE MIR 2 193 -15 2 708 312 286 79 73 chr12 16148478 16148655 -105108875 - B3A SINE B2 -16 182 5 2 708 288 0 0 0 chr12 16148660 16148692 -105108838 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 2 708 352 195 35 35 chr12 16148695 16148780 -105108750 - B1F SINE Alu -54 95 11 2 708 869 123 0 6 chr12 16149301 16149481 -105108049 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 708 450 325 17 8 chr12 16149634 16149752 -105107778 + RSINE1 SINE B4 36 154 -11 2 708 246 81 0 0 chr12 16151287 16151324 -105106206 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 708 750 268 16 53 chr12 16151358 16151602 -105105928 - MTE2b LTR MaLR -19 360 126 2 708 449 239 25 33 chr12 16151615 16151736 -105105794 - PB1D9 SINE Alu 0 120 1 2 708 355 224 0 0 chr12 16151736 16151799 -105105731 - MTE2b LTR MaLR -242 137 75 2 708 252 0 0 0 chr12 16152803 16152831 -105104699 + (T)n Simple_repeat Simple_repeat 1 28 0 2 708 299 135 0 51 chr12 16152864 16152942 -105104588 + T-rich Low_complexity Low_complexity 1 74 0 2 708 577 328 15 15 chr12 16153782 16153984 -105103546 - ID_B1 SINE B4 -2 222 21 2 708 1386 196 63 14 chr12 16153984 16154146 -105103384 + ORR1D1 LTR MaLR 1 163 -211 2 708 672 13 0 0 chr12 16154146 16154223 -105103307 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 708 459 0 0 0 chr12 16154223 16154273 -105103257 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 708 1386 196 63 14 chr12 16154273 16154394 -105103136 + ORR1D1 LTR MaLR 164 298 -76 2 708 690 302 29 62 chr12 16154658 16155060 -105102470 - RLTR26 LTR ERVK -217 425 1 2 708 289 164 32 16 chr12 16155065 16155127 -105102403 + ORR1D1 LTR MaLR 312 374 0 2 708 522 0 0 0 chr12 16155424 16155482 -105102048 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 708 913 311 59 0 chr12 16155482 16155736 -105101794 - B4A SINE B4 -23 269 1 2 708 318 50 0 0 chr12 16155809 16155849 -105101681 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 708 23 78 0 0 chr12 16155896 16155947 -105101583 + AT_rich Low_complexity Low_complexity 1 51 0 2 708 27 49 0 0 chr12 16156136 16156177 -105101353 + AT_rich Low_complexity Low_complexity 1 41 0 2 708 2868 52 3 0 chr12 16156202 16156547 -105100983 + ORR1A1 LTR MaLR 1 346 0 2 708 798 248 75 36 chr12 16157011 16157316 -105100214 - MER44A DNA MER2_type 0 339 23 2 708 512 254 81 124 chr12 16159202 16159436 -105098094 - MTEb LTR MaLR -12 367 144 2 708 490 271 29 0 chr12 16159972 16160112 -105097418 - MTEb LTR MaLR -235 144 1 2 708 237 231 0 0 chr12 16160278 16160330 -105097200 + GA-rich Low_complexity Low_complexity 1 52 0 2 708 480 303 15 22 chr12 16160330 16160465 -105097065 - RSINE1 SINE B4 -29 136 3 2 708 367 298 19 9 chr12 16160491 16160596 -105096934 - B1_Mur1 SINE Alu -5 144 39 2 708 477 330 22 74 chr12 16160632 16160861 -105096669 + MER44B DNA MER2_type 83 299 -251 2 708 297 128 0 0 chr12 16160907 16160954 -105096576 + (GAGTG)n Simple_repeat Simple_repeat 4 50 0 2 708 235 374 40 0 chr12 16161012 16161111 -105096419 + MER44B DNA MER2_type 448 550 0 2 708 195 288 14 132 chr12 16161257 16161401 -105096129 + L2c LINE L2 3260 3386 -1 2 708 283 276 25 49 chr12 16161732 16161854 -105095676 + RLTR14 LTR ERV1 264 382 0 2 708 204 122 0 0 chr12 16163432 16163473 -105094057 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 708 225 0 0 0 chr12 16163473 16163498 -105094032 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 708 896 269 11 38 chr12 16163556 16163819 -105093711 - MTEa LTR MaLR 0 379 124 2 708 917 239 134 18 chr12 16163825 16164153 -105093377 + ORR1D2 LTR MaLR 3 368 -2 2 708 240 271 0 79 chr12 16164155 16164231 -105093299 - MTEa LTR MaLR -309 70 1 2 708 444 19 0 0 chr12 16167255 16167308 -105090222 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 708 3291 271 79 35 chr12 16167308 16168395 -105089135 + Lx9 LINE L1 6316 7446 -198 2 708 234 62 0 0 chr12 16168395 16168427 -105089103 + (CAA)n Simple_repeat Simple_repeat 1 32 0 2 708 3291 271 79 35 chr12 16168427 16168469 -105089061 + Lx9 LINE L1 7447 7494 -150 2 708 467 200 10 10 chr12 16169799 16169895 -105087635 - MLT1A1 LTR MaLR -14 394 299 2 708 1272 129 74 23 chr12 16170751 16170966 -105086564 + URR1A DNA MER1_type 1 226 0 2 708 227 319 72 29 chr12 16171263 16171402 -105086128 + L1M6 LINE L1 1568 1712 -4784 2 708 188 196 85 51 chr12 16171792 16171851 -105085679 + L2b LINE L2 3277 3337 -38 2 708 808 278 102 53 chr12 16172482 16172843 -105084687 - MTEa LTR MaLR 0 379 1 2 708 1005 101 0 0 chr12 16173797 16173945 -105083585 + (CA)n Simple_repeat Simple_repeat 2 149 0 2 708 581 221 134 47 chr12 16174000 16174084 -105083446 + B4 SINE B4 3 87 -205 2 708 495 0 0 0 chr12 16174084 16174139 -105083391 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 708 581 221 134 47 chr12 16174139 16174225 -105083305 + B4 SINE B4 88 187 -105 2 708 803 263 53 71 chr12 16175140 16175406 -105082124 - B4A SINE B4 0 292 32 2 708 333 0 0 0 chr12 16175881 16175918 -105081612 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 2 708 634 322 74 0 chr12 16176419 16176621 -105080909 - ID_B1 SINE B4 -1 223 7 2 708 405 298 58 22 chr12 16180433 16180656 -105076874 + L1MEd LINE L1 1010 1240 -4879 2 708 3210 32 45 0 chr12 16180709 16181088 -105076442 - MTA_Mm LTR MaLR 0 396 1 3 708 375 252 70 78 chr12 16181288 16181417 -105076113 + ID_B1 SINE B4 88 215 -9 3 708 25 75 0 0 chr12 16181534 16181587 -105075943 + AT_rich Low_complexity Low_complexity 1 53 0 3 708 1369 224 46 17 chr12 16181653 16182002 -105075528 + ORR1D2 LTR MaLR 1 359 -11 3 708 186 43 0 0 chr12 16182100 16182123 -105075407 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 708 411 21 0 0 chr12 16182123 16182170 -105075360 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 708 549 252 17 104 chr12 16183219 16183392 -105074138 + B3A SINE B2 3 160 -38 3 708 231 61 0 0 chr12 16183403 16183436 -105074094 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 708 411 38 0 0 chr12 16183437 16183490 -105074040 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 3 708 345 252 40 8 chr12 16183500 16183624 -105073906 - L1MB5 LINE L1 -265 5909 5782 3 708 271 299 122 20 chr12 16183627 16183774 -105073756 + RSINE1 SINE B4 3 164 -1 3 708 1897 135 0 13 chr12 16183806 16184122 -105073408 + L1_Mur1 LINE L1 3495 3806 -2080 3 708 6541 146 13 59 chr12 16184104 16184716 -105072814 + Lx2 LINE L1 4737 5305 -578 3 708 8153 58 0 0 chr12 16184716 16185712 -105071818 + L1Md_T LINE L1 5587 6582 0 3 708 6788 132 19 18 chr12 16185712 16187048 -105070482 + Lx2 LINE L1 5306 6643 -354 3 708 1438 92 27 9 chr12 16187048 16187267 -105070263 + Lx2 LINE L1 6775 6997 0 3 708 337 294 81 27 chr12 16187279 16187464 -105070066 - L1MB5 LINE L1 -391 5789 5595 3 708 471 238 29 0 chr12 16187715 16187820 -105069710 + RMER30 DNA MER1_type 94 201 -1 3 708 521 359 16 11 chr12 16188181 16188367 -105069163 - B4A SINE B4 -74 218 32 3 708 252 122 0 0 chr12 16189389 16189430 -105068100 + (A)n Simple_repeat Simple_repeat 1 41 0 3 708 621 61 0 0 chr12 16189668 16189750 -105067780 + (TCCC)n Simple_repeat Simple_repeat 1 82 0 3 708 761 256 101 11 chr12 16189871 16190148 -105067382 + MTEb LTR MaLR 3 304 -75 3 708 626 226 134 0 chr12 16191643 16191807 -105065723 + ID_B1 SINE B4 2 187 -37 3 708 219 260 71 30 chr12 16191728 16191827 -105065703 + B1_Mus1 SINE Alu 28 130 -18 3 708 225 274 47 12 chr12 16192250 16192335 -105065195 + PB1D7 SINE Alu 21 108 -12 3 708 498 299 21 0 chr12 16194566 16194710 -105062820 + MTEa LTR MaLR 4 150 -229 3 708 495 267 59 13 chr12 16194690 16194842 -105062688 + MTE-int LTR MaLR 842 1000 -580 3 708 585 82 43 36 chr12 16194844 16194984 -105062546 + (TCTCTG)n Simple_repeat Simple_repeat 4 144 0 3 708 214 274 0 125 chr12 16195382 16195478 -105062052 + B4A SINE B4 85 168 -124 3 708 269 286 0 14 chr12 16196124 16196195 -105061335 - RSINE1 SINE B4 0 165 96 3 708 1636 260 121 34 chr12 16196468 16197120 -105060410 + Lx9 LINE L1 6808 7516 -128 3 708 233 183 0 16 chr12 16197132 16197193 -105060337 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 708 207 0 0 0 chr12 16197204 16197227 -105060303 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 708 219 69 0 0 chr12 16197227 16197256 -105060274 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 708 1763 193 139 15 chr12 16198632 16199101 -105058429 - RLTR11A2 LTR ERVK 0 527 1 3 708 442 350 38 51 chr12 16200061 16200296 -105057234 - ORR1E LTR MaLR -48 311 80 3 708 1289 211 52 41 chr12 16200472 16200837 -105056693 + ORR1D2 LTR MaLR 1 369 -1 3 708 252 302 85 0 chr12 16200842 16200948 -105056582 + ORR1D2-int LTR MaLR 5 119 -1251 3 708 1917 143 84 0 chr12 16200948 16201304 -105056226 + ORR1B1 LTR MaLR 1 386 -8 3 708 4454 260 49 14 chr12 16201308 16202522 -105055008 + ORR1D2-int LTR MaLR 115 1370 0 3 708 785 281 132 24 chr12 16202522 16202854 -105054676 + ORR1D2 LTR MaLR 1 368 -2 3 708 1257 248 28 83 chr12 16203599 16203986 -105053544 + MTEb LTR MaLR 1 366 -13 3 708 227 260 79 58 chr12 16204131 16204270 -105053260 - L1MC LINE L1 -2058 5824 5683 3 708 1929 166 28 76 chr12 16205026 16205076 -105052454 - ORR1C1 LTR MaLR 0 378 336 3 708 868 177 0 17 chr12 16205076 16205254 -105052276 - Lx2 LINE L1 -1 6996 6822 3 708 1929 166 28 76 chr12 16205254 16205600 -105051930 - ORR1C1 LTR MaLR -43 335 1 3 708 2115 68 4 11 chr12 16207317 16207598 -105049932 + L1Md_F2 LINE L1 6294 6572 -10 3 708 561 264 71 0 chr12 16207689 16207829 -105049701 - B3A SINE B2 -47 151 2 3 708 279 286 13 0 chr12 16209331 16209408 -105048122 + BC1_Mm scRNA scRNA 4 81 -71 3 708 633 281 84 82 chr12 16210016 16210348 -105047182 + MLT1B LTR MaLR 3 415 -52 3 708 2142 21 0 0 chr12 16210794 16211032 -105046498 - L1_Mm LINE L1 -146 5737 5500 3 708 4073 43 8 0 chr12 16211032 16211520 -105046010 + L1Md_T LINE L1 6091 6582 0 3 708 1376 257 33 6 chr12 16211581 16211941 -105045589 + ORR1D2 LTR MaLR 1 370 0 3 708 199 244 0 25 chr12 16213157 16213237 -105044293 + CT-rich Low_complexity Low_complexity 3 80 0 3 708 1501 202 66 54 chr12 16213241 16213633 -105043897 - MTD LTR MaLR -14 405 9 3 708 235 208 42 0 chr12 16213668 16213716 -105043814 - PB1D10 SINE Alu -6 111 62 3 708 189 0 0 0 chr12 16214446 16214467 -105043063 + (T)n Simple_repeat Simple_repeat 1 21 0 3 708 690 246 88 9 chr12 16214952 16215178 -105042352 - L1MA9 LINE L1 0 6312 6069 3 708 711 244 0 30 chr12 16215248 16215413 -105042117 - RSINE1 SINE B4 -3 162 3 3 708 214 29 0 54 chr12 16215423 16215460 -105042070 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 708 193 224 61 0 chr12 16215910 16215959 -105041571 + MIRb SINE MIR 23 74 -194 3 708 22 80 0 0 chr12 16216333 16216383 -105041147 + AT_rich Low_complexity Low_complexity 1 50 0 3 708 956 296 123 47 chr12 16217156 16217844 -105039686 + L1M4 LINE L1 279 1019 -5523 3 708 336 284 0 0 chr12 16217883 16218017 -105039513 + (TG)n Simple_repeat Simple_repeat 2 135 0 3 708 267 325 0 0 chr12 16218018 16218095 -105039435 + (TATATG)n Simple_repeat Simple_repeat 5 81 0 3 708 453 290 0 0 chr12 16218095 16218271 -105039259 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 708 761 302 115 36 chr12 16218280 16219017 -105038513 + L1M4 LINE L1 1029 1821 -4825 3 708 868 173 0 11 chr12 16219165 16219346 -105038184 + GA-rich Low_complexity Low_complexity 2 180 0 3 708 3212 83 2 2 chr12 16220175 16220608 -105036922 + L1_Mus4 LINE L1 6203 6635 -1 3 708 23 0 0 0 chr12 16221032 16221055 -105036475 + AT_rich Low_complexity Low_complexity 1 23 0 3 708 2134 90 36 3 chr12 16221191 16221493 -105036037 - Lx2 LINE L1 -1 6996 6685 3 708 21 0 0 0 chr12 16221578 16221599 -105035931 + AT_rich Low_complexity Low_complexity 1 21 0 3 708 417 323 54 22 chr12 16222079 16222301 -105035229 - MER31A LTR ERV1 -25 460 232 3 708 393 22 0 0 chr12 16222320 16222366 -105035164 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 708 369 162 0 0 chr12 16222395 16222463 -105035067 + (TAA)n Simple_repeat Simple_repeat 3 70 0 3 708 764 329 4 13 chr12 16222468 16222696 -105034834 + B4A SINE B4 5 230 -62 3 708 264 122 0 0 chr12 16222708 16222749 -105034781 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 708 1023 76 12 12 chr12 16223741 16223901 -105033629 + (TTTTC)n Simple_repeat Simple_repeat 1 160 0 3 708 396 167 0 0 chr12 16223906 16223978 -105033552 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 708 840 142 21 21 chr12 16223978 16224150 -105033380 - B2_Mm2 SINE B2 -13 203 33 3 708 25 0 0 0 chr12 16224847 16224872 -105032658 + AT_rich Low_complexity Low_complexity 1 25 0 3 708 1165 55 7 0 chr12 16224928 16225074 -105032456 - B1_Mus2 SINE Alu 0 147 1 3 708 486 249 128 78 chr12 16225079 16225258 -105032272 - B3A SINE B2 -1 197 10 3 708 628 266 73 44 chr12 16225271 16225546 -105031984 - Lx8 LINE L1 -3 7470 7188 3 708 1663 113 4 4 chr12 16225549 16225806 -105031724 - RMER17B LTR ERVK -701 257 1 3 708 255 284 22 11 chr12 16228073 16228162 -105029368 + MLT1J2 LTR MaLR 356 445 -3 3 708 238 321 12 0 chr12 16228569 16228650 -105028880 - MLT1A0 LTR MaLR -228 137 56 3 708 447 316 41 5 chr12 16229000 16229194 -105028336 - MER2 DNA MER2_type -53 292 92 3 708 198 0 0 0 chr12 16230442 16230464 -105027066 + (CATA)n Simple_repeat Simple_repeat 2 23 0 3 708 894 45 0 0 chr12 16230991 16231102 -105026428 + (CA)n Simple_repeat Simple_repeat 2 112 0 3 708 1072 197 9 23 chr12 16231768 16231986 -105025544 + B3 SINE B2 1 215 -1 3 708 282 116 0 0 chr12 16232157 16232200 -105025330 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 708 612 276 12 58 chr12 16232201 16232374 -105025156 - RSINE1 SINE B4 0 165 1 3 708 1191 296 70 32 chr12 16232681 16233211 -105024319 - MLT1E2 LTR MaLR -77 550 1 3 708 203 0 0 36 chr12 16235296 16235324 -105022206 + (TAA)n Simple_repeat Simple_repeat 3 29 0 3 708 291 292 31 10 chr12 16235941 16236038 -105021492 - L2a LINE L2 -23 3403 3305 3 708 749 11 11 0 chr12 16238792 16238882 -105018648 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 3 708 244 151 82 0 chr12 16239512 16239585 -105017945 + (TTTG)n Simple_repeat Simple_repeat 4 82 0 3 708 486 0 0 0 chr12 16240142 16240196 -105017334 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 708 349 291 0 0 chr12 16240669 16240755 -105016775 + B3A SINE B2 1 86 -112 3 708 2772 75 11 11 chr12 16240786 16241163 -105016367 - L1Md_F2 LINE L1 0 6582 6206 3 708 3659 54 2 0 chr12 16241163 16241610 -105015920 + L1Md_F2 LINE L1 5730 6177 -405 3 708 255 316 99 56 chr12 16242043 16242204 -105015326 - MER3 DNA MER1_type -19 190 23 3 708 498 75 0 0 chr12 16242655 16242722 -105014808 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 3 708 276 30 0 0 chr12 16243500 16243533 -105013997 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 708 300 248 15 8 chr12 16243533 16243667 -105013863 + (TG)n Simple_repeat Simple_repeat 1 135 0 3 708 688 332 36 18 chr12 16243680 16243959 -105013571 - B4A SINE B4 -7 285 2 3 708 201 147 0 0 chr12 16244328 16244362 -105013168 + (CATG)n Simple_repeat Simple_repeat 3 36 0 3 708 602 274 60 10 chr12 16244391 16244590 -105012940 - B4 SINE B4 -82 210 2 3 708 210 261 53 11 chr12 16245024 16245116 -105012414 + MIR SINE MIR 49 148 -120 4 708 564 250 124 5 chr12 16246167 16246352 -105011178 + ID_B1 SINE B4 5 211 -13 4 708 375 123 0 0 chr12 16246486 16246543 -105010987 - B3 SINE B2 -157 59 3 4 708 412 282 135 62 chr12 16247369 16247577 -105009953 - L1M3 LINE L1 -449 5722 5500 4 708 410 276 207 0 chr12 16248048 16248265 -105009265 + L1MB1 LINE L1 5893 6154 -14 4 708 1166 101 0 9 chr12 16248761 16248984 -105008546 + (TAGA)n Simple_repeat Simple_repeat 1 220 0 4 708 192 200 0 0 chr12 16248991 16249036 -105008494 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 4 708 393 39 0 0 chr12 16249633 16249684 -105007846 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 4 708 554 273 69 135 chr12 16250925 16251243 -105006287 - MTE2a LTR MaLR -20 359 63 4 708 457 265 0 0 chr12 16251322 16251420 -105006110 + B3A SINE B2 10 107 -91 4 708 630 0 0 0 chr12 16251429 16251499 -105006031 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 708 462 36 0 0 chr12 16251499 16251554 -105005976 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 708 377 256 84 17 chr12 16252592 16252711 -105004819 + MTE2a LTR MaLR 57 183 -196 4 708 1380 44 0 0 chr12 16252711 16252891 -105004639 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 709 1000 262 65 23 chr12 16253054 16253435 -105004095 - MTE2a LTR MaLR 0 419 10 4 709 498 108 0 0 chr12 16253440 16253514 -105004016 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 4 709 407 275 0 0 chr12 16253552 16253632 -105003898 - ID4_ SINE ID -2 81 2 4 709 335 331 385 16 chr12 16253927 16254180 -105003350 - MER47B DNA MER2_type -3 415 70 4 709 215 133 0 22 chr12 16254218 16254238 -105003292 + polypurine Low_complexity Low_complexity 1 20 0 4 709 1347 72 0 0 chr12 16254238 16254418 -105003112 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 4 709 215 133 0 22 chr12 16254418 16254443 -105003087 + polypurine Low_complexity Low_complexity 21 45 0 4 709 303 343 86 45 chr12 16254951 16255171 -105002359 - MLT1J LTR MaLR -172 340 112 4 709 188 304 200 29 chr12 16256658 16256763 -105000767 + MIR SINE MIR 30 152 -56 4 709 950 224 63 44 chr12 16257070 16257341 -105000189 - L1MA8 LINE L1 -6 6285 6010 4 709 197 379 42 0 chr12 16258062 16258157 -104999373 + L2a LINE L2 2959 3057 -362 4 709 236 294 54 0 chr12 16258383 16258475 -104999055 + L2a LINE L2 3327 3423 -3 4 709 302 197 25 38 chr12 16260127 16260206 -104997324 - ORR1E LTR MaLR -1 378 301 4 709 428 269 6 19 chr12 16260256 16260415 -104997115 - HAL1-2a_MD LINE L1 -525 2499 2343 4 709 319 341 50 59 chr12 16260432 16260632 -104996898 - ORR1E LTR MaLR -65 294 97 4 709 1264 155 9 0 chr12 16260632 16260845 -104996685 - URR1A DNA MER1_type -1 225 11 4 709 1514 21 0 16 chr12 16261249 16261438 -104996092 - L1Md_F2 LINE L1 -12 6570 6385 4 709 747 299 9 5 chr12 16261480 16261695 -104995835 + B3 SINE B2 1 216 0 4 709 31 26 0 0 chr12 16261789 16261827 -104995703 + AT_rich Low_complexity Low_complexity 1 38 0 4 709 292 303 124 0 chr12 16262141 16262286 -104995244 + MER20 DNA MER1_type 49 211 -8 4 709 226 320 0 0 chr12 16262512 16262587 -104994943 + CT-rich Low_complexity Low_complexity 1 75 0 4 709 1593 207 45 17 chr12 16262889 16263248 -104994282 + ORR1D1 LTR MaLR 6 374 0 4 709 317 370 0 0 chr12 16263340 16263440 -104994090 + Tigger5 DNA MER2_type 98 197 -2209 4 709 1711 213 64 25 chr12 16263576 16264063 -104993467 - RLTR20B3 LTR ERVK -51 526 21 4 709 2263 181 69 33 chr12 16264308 16264818 -104992712 + RLTR11A LTR ERVK 1 528 0 4 709 981 128 0 0 chr12 16265526 16265706 -104991824 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 709 415 297 7 26 chr12 16268975 16269127 -104988403 + Lx7 LINE L1 7539 7687 -9 4 709 209 164 55 0 chr12 16269354 16269427 -104988103 + (TAGA)n Simple_repeat Simple_repeat 3 79 0 4 709 296 274 44 66 chr12 16270007 16270144 -104987386 + MLT1A LTR MaLR 25 158 -216 4 709 240 132 0 0 chr12 16270339 16270377 -104987153 + URR1B DNA MER1_type 188 225 0 4 709 412 246 29 65 chr12 16270452 16270591 -104986939 + L1MD1 LINE L1 6040 6173 -69 4 709 29 0 0 0 chr12 16270606 16270635 -104986895 + AT_rich Low_complexity Low_complexity 1 29 0 4 709 873 209 17 0 chr12 16270674 16270846 -104986684 - Lx4B LINE L1 -588 6470 6296 4 709 7869 162 67 7 chr12 16270849 16272194 -104985336 - Lx4B LINE L1 -300 6700 5229 4 709 369 0 0 0 chr12 16272194 16272235 -104985295 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 709 243 0 0 0 chr12 16272235 16272261 -104985269 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 709 7869 148 24 2 chr12 16272261 16272893 -104984637 - Lx4B LINE L1 -649 5228 4594 4 709 3308 81 2 39 chr12 16272894 16272946 -104984584 + L1_Mur2 LINE L1 4100 4151 -1726 4 709 1073 89 0 0 chr12 16272946 16273081 -104984449 + B1_Mus1 SINE Alu 2 136 -12 4 709 243 0 0 0 chr12 16273082 16273109 -104984421 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 709 3308 81 2 39 chr12 16273109 16273543 -104983987 + L1_Mur2 LINE L1 4152 4570 -1307 4 709 258 269 0 56 chr12 16275138 16275209 -104982321 + RSINE1 SINE B4 97 163 -2 4 709 22 0 0 0 chr12 16275280 16275302 -104982228 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 183 100 0 0 chr12 16276204 16276234 -104981296 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 4 709 348 111 0 0 chr12 16276970 16277033 -104980497 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 709 895 290 8 61 chr12 16277089 16277350 -104980180 - B4A SINE B4 0 292 46 4 709 203 304 41 74 chr12 16277442 16277563 -104979967 - MIRb SINE MIR -120 148 32 4 709 886 135 129 0 chr12 16278487 16278650 -104978880 + URR1A DNA MER1_type 31 214 -12 4 709 1321 188 16 12 chr12 16278658 16278911 -104978619 + ORR1A4 LTR MaLR 48 301 -93 4 709 2325 194 33 12 chr12 16278911 16279427 -104978103 - RLTR11A2 LTR ERVK 0 527 1 4 709 491 171 18 71 chr12 16279427 16279516 -104978014 + ORR1A4 LTR MaLR 304 386 -8 4 709 9641 161 40 75 chr12 16279521 16281553 -104975977 + ORR1A4-int LTR MaLR 2 1963 0 4 709 1588 170 16 127 chr12 16281553 16281923 -104975607 + ORR1A4 LTR MaLR 1 329 0 4 709 216 288 81 14 chr12 16281987 16282061 -104975469 - MIRc SINE MIR -148 120 42 4 709 27 0 0 0 chr12 16282401 16282428 -104975102 + AT_rich Low_complexity Low_complexity 1 27 0 4 709 1377 62 5 5 chr12 16282428 16282621 -104974909 - L1_Mus4 LINE L1 -8 6628 6436 4 709 2012 69 23 4 chr12 16282621 16282883 -104974647 + L1_Mus4 LINE L1 5885 6151 -485 4 709 21 36 0 0 chr12 16282883 16282911 -104974619 + AT_rich Low_complexity Low_complexity 1 28 0 4 709 264 220 0 0 chr12 16283120 16283179 -104974351 + Lx9 LINE L1 6992 7050 -594 4 709 1821 173 37 6 chr12 16283207 16283555 -104973975 + ORR1B2 LTR MaLR 1 359 -8 4 709 729 303 100 11 chr12 16283582 16283852 -104973678 + Lx9 LINE L1 7079 7372 -272 4 709 237 296 74 0 chr12 16284189 16284270 -104973260 + Lx8 LINE L1 7128 7214 -259 4 709 496 250 17 7 chr12 16285273 16285419 -104972111 + B1F2 SINE Alu 1 148 -1 4 709 244 239 32 21 chr12 16286386 16286480 -104971050 + (TATATG)n Simple_repeat Simple_repeat 5 99 0 4 709 485 16 16 0 chr12 16286510 16286572 -104970958 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 709 998 154 160 45 chr12 16287107 16287293 -104970237 - RMER10B LTR ERVL 0 398 222 4 709 1317 32 0 0 chr12 16287293 16287451 -104970079 + (GGGAGA)n Simple_repeat Simple_repeat 4 161 0 4 709 998 119 453 24 chr12 16287451 16287583 -104969947 - RMER10B LTR ERVL -177 221 1 4 709 546 299 58 122 chr12 16289114 16289719 -104967811 + L1M4 LINE L1 4541 5122 -1024 4 709 546 287 9 76 chr12 16289719 16289930 -104967600 + B3A SINE B2 2 198 0 4 709 546 299 58 122 chr12 16289930 16290023 -104967507 + L1M4 LINE L1 5123 5199 -947 4 709 834 210 151 0 chr12 16290023 16290209 -104967321 + B3 SINE B2 3 216 0 4 709 546 317 107 59 chr12 16290209 16290760 -104966770 + L1M4 LINE L1 5200 5768 -410 4 709 282 258 10 79 chr12 16290844 16290945 -104966585 - ID_B1 SINE B4 -27 197 104 4 709 940 164 143 5 chr12 16291194 16291390 -104966140 + URR1B DNA MER1_type 1 223 -2 4 709 322 254 16 120 chr12 16293450 16293575 -104963955 + MTEa LTR MaLR 267 378 -1 4 709 415 336 66 29 chr12 16293575 16293817 -104963713 + L1MC1 LINE L1 6077 6327 -6 4 709 398 206 84 0 chr12 16294251 16294344 -104963186 + B1_Mur2 SINE Alu 13 120 0 4 709 788 269 6 0 chr12 16294655 16294837 -104962693 + B3 SINE B2 34 216 0 4 709 336 279 224 33 chr12 16295111 16295352 -104962178 + MLT1A0 LTR MaLR 46 332 -33 4 709 242 315 0 0 chr12 16296796 16296869 -104960661 + (CATA)n Simple_repeat Simple_repeat 1 73 0 4 709 843 299 51 16 chr12 16298391 16298707 -104958823 - L1_Rod LINE L1 -87 5760 5434 4 709 317 291 7 26 chr12 16298707 16298834 -104958696 + L1MA4 LINE L1 5795 5951 -205 4 709 864 29 0 0 chr12 16298837 16298940 -104958590 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 4 709 266 324 19 10 chr12 16300704 16300807 -104956723 + RSINE1 SINE B4 43 146 -19 4 709 230 156 0 0 chr12 16300952 16300997 -104956533 + A-rich Low_complexity Low_complexity 1 45 0 4 709 578 316 11 6 chr12 16301090 16301268 -104956262 + B3A SINE B2 4 182 -16 4 709 180 0 0 0 chr12 16301273 16301293 -104956237 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 4 709 269 169 77 0 chr12 16301308 16301373 -104956157 + Lx8 LINE L1 7402 7471 -2 4 709 22 56 0 0 chr12 16301374 16301410 -104956120 + AT_rich Low_complexity Low_complexity 1 36 0 4 709 1191 74 0 0 chr12 16301502 16301720 -104955810 + (TG)n Simple_repeat Simple_repeat 1 218 0 4 709 410 292 0 0 chr12 16301818 16301924 -104955606 + Lx8 LINE L1 7187 7292 -181 4 709 445 58 29 0 chr12 16301952 16302021 -104955509 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 709 390 217 53 32 chr12 16302659 16302754 -104954776 + MTEa LTR MaLR 1 97 -282 4 709 345 279 158 51 chr12 16302754 16302874 -104954656 + MT2A LTR ERVL 1 238 -295 4 709 378 143 0 0 chr12 16302874 16302937 -104954593 + (TTG)n Simple_repeat Simple_repeat 1 63 0 4 709 423 337 29 83 chr12 16303902 16304216 -104953314 + Lx8 LINE L1 7156 7452 -21 4 709 189 0 0 0 chr12 16305175 16305196 -104952334 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 5 709 351 44 0 0 chr12 16305704 16305749 -104951781 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 709 548 29 14 0 chr12 16307041 16307111 -104950419 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 709 195 42 0 0 chr12 16307844 16307868 -104949662 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 5 709 316 327 211 35 chr12 16308399 16308915 -104948615 - L2 LINE L2 -842 2577 1971 5 709 554 0 0 15 chr12 16309631 16309698 -104947832 + (CCA)n Simple_repeat Simple_repeat 1 66 0 5 709 516 281 37 180 chr12 16309770 16309808 -104947722 + MTD LTR MaLR 8 36 -343 5 709 1467 132 9 9 chr12 16309808 16310030 -104947500 + URR1A DNA MER1_type 5 226 0 5 709 810 238 88 117 chr12 16310030 16310425 -104947105 + MTD LTR MaLR 35 403 -16 5 709 513 324 87 26 chr12 16310637 16310903 -104946627 - MLT1A0 LTR MaLR -49 316 35 5 709 765 146 0 0 chr12 16311012 16311163 -104946367 + (TC)n Simple_repeat Simple_repeat 2 152 0 5 709 274 256 23 0 chr12 16311166 16311252 -104946278 + (TCTG)n Simple_repeat Simple_repeat 1 88 0 5 709 267 186 17 34 chr12 16311256 16311373 -104946157 + (TCTCTG)n Simple_repeat Simple_repeat 2 116 0 5 709 195 42 0 0 chr12 16311383 16311407 -104946123 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 709 208 147 0 0 chr12 16311468 16311502 -104946028 + (A)n Simple_repeat Simple_repeat 1 34 0 5 709 185 333 86 0 chr12 16312127 16312208 -104945322 - L2b LINE L2 -1 3374 3287 5 709 945 286 84 22 chr12 16312892 16313249 -104944281 - MTD LTR MaLR -36 383 5 5 709 263 310 120 8 chr12 16313702 16313819 -104943711 + MER5A1 DNA MER1_type 2 131 -35 5 709 184 231 0 0 chr12 16313955 16313994 -104943536 - MER5B DNA MER1_type -139 39 1 5 709 198 240 0 0 chr12 16314151 16314201 -104943329 + (CGGA)n Simple_repeat Simple_repeat 3 52 0 5 709 226 164 27 27 chr12 16314203 16314278 -104943252 + L1ME2z LINE L1 6271 6345 -99 5 709 357 375 126 28 chr12 16314562 16314960 -104942570 - L4 LINE RTE -233 1796 1360 5 709 769 284 71 25 chr12 16315438 16315676 -104941854 + B4A SINE B4 24 272 -20 5 709 203 103 26 0 chr12 16316627 16316666 -104940864 + (TAA)n Simple_repeat Simple_repeat 1 40 0 5 709 459 307 25 25 chr12 16317320 16317517 -104940013 - RMER15 LTR ERVL -94 481 285 5 709 229 289 11 22 chr12 16317844 16317936 -104939594 - ORR1E LTR MaLR -25 354 264 5 709 291 379 16 0 chr12 16318049 16318173 -104939357 - ORR1E LTR MaLR -230 129 4 5 709 250 260 134 71 chr12 16318331 16318443 -104939087 - PB1D7 SINE Alu 0 120 2 5 709 1321 106 0 16 chr12 16318572 16318763 -104938767 + B2_Mm2 SINE B2 2 189 -6 5 709 243 320 123 32 chr12 16318816 16318971 -104938559 + MIR3 SINE MIR 27 195 -13 5 709 231 36 0 0 chr12 16319503 16319531 -104937999 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 709 490 272 37 0 chr12 16319587 16319723 -104937807 - MTEb LTR MaLR -233 146 6 5 709 301 264 36 94 chr12 16319723 16319861 -104937669 - ORR1E LTR MaLR -223 147 18 5 709 1684 295 92 4 chr12 16320203 16320918 -104936612 - L1MA6 LINE L1 -7 6293 5516 5 709 504 0 0 0 chr12 16320928 16320984 -104936546 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 709 1120 70 7 0 chr12 16321033 16321176 -104936354 + B1_Mus2 SINE Alu 4 147 0 5 709 448 52 82 10 chr12 16321176 16321274 -104936256 + (CAAAA)n Simple_repeat Simple_repeat 3 107 0 5 709 449 278 44 15 chr12 16321287 16321422 -104936108 - B4A SINE B4 -46 246 108 5 709 333 256 0 0 chr12 16321510 16321588 -104935942 - B4A SINE B4 -213 79 2 5 709 3187 29 45 0 chr12 16323088 16323467 -104934063 + MTA_Mm LTR MaLR 1 396 0 5 709 8883 45 19 1 chr12 16323467 16324546 -104932984 + MTA_Mm-int LTR MaLR 1 1098 0 5 709 3239 29 42 0 chr12 16324546 16324926 -104932604 + MTA_Mm LTR MaLR 1 396 0 5 709 1165 266 9 133 chr12 16324942 16325371 -104932159 - MTE2a LTR MaLR 0 379 4 5 709 715 119 16 0 chr12 16326278 16326404 -104931126 + (TC)n Simple_repeat Simple_repeat 2 129 0 5 709 206 264 11 44 chr12 16326404 16326495 -104931035 + (TATATG)n Simple_repeat Simple_repeat 1 88 0 5 709 599 281 82 47 chr12 16326506 16326738 -104930792 - B4A SINE B4 -52 240 1 5 709 234 0 0 0 chr12 16327587 16327613 -104929917 + (T)n Simple_repeat Simple_repeat 1 26 0 5 709 646 281 27 0 chr12 16327850 16328035 -104929495 + MLT1B LTR MaLR 16 205 -185 5 709 512 248 34 8 chr12 16328215 16328333 -104929197 + ID_B1 SINE B4 1 121 -103 5 709 452 285 110 35 chr12 16329023 16329223 -104928307 + B3 SINE B2 2 216 0 5 709 230 0 33 0 chr12 16331828 16331858 -104925672 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 709 322 120 0 20 chr12 16331885 16331900 -104925630 - HAL1-3A_ME LINE L1 -833 2025 2011 5 709 432 0 0 0 chr12 16331900 16331948 -104925582 + (GTTTG)n Simple_repeat Simple_repeat 1 48 0 5 709 322 120 0 20 chr12 16331948 16331983 -104925547 - HAL1-3A_ME LINE L1 -848 2010 1976 5 709 405 0 0 0 chr12 16332086 16332131 -104925399 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 709 549 157 10 0 chr12 16332856 16332958 -104924572 + ORR1D2 LTR MaLR 266 368 -2 5 709 496 211 13 0 chr12 16333123 16333275 -104924255 + (TGGA)n Simple_repeat Simple_repeat 1 154 0 5 709 219 290 16 0 chr12 16333291 16333353 -104924177 + (TGGA)n Simple_repeat Simple_repeat 1 63 0 5 709 330 279 18 9 chr12 16334307 16334413 -104923117 - MIR SINE MIR -52 216 100 5 709 297 0 0 0 chr12 16334685 16334718 -104922812 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 709 762 305 95 21 chr12 16335376 16335701 -104921829 + MTE2b LTR MaLR 31 379 0 5 709 411 0 0 48 chr12 16335796 16335858 -104921672 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 5 709 819 250 11 0 chr12 16337227 16337407 -104920123 + B3 SINE B2 34 215 -1 5 709 6563 21 5 0 chr12 16337413 16338161 -104919369 + L1Md_F3 LINE L1 5832 6583 -1 5 709 1491 272 11 0 chr12 16338210 16338566 -104918964 + MTEa LTR MaLR 20 379 0 5 709 1067 259 35 24 chr12 16339311 16339600 -104917930 + B4A SINE B4 1 292 0 5 709 475 266 25 38 chr12 16340138 16340298 -104917232 - Lx9 LINE L1 -10 7634 7477 5 709 222 174 0 0 chr12 16340312 16340358 -104917172 + (TATG)n Simple_repeat Simple_repeat 2 47 0 5 709 555 262 0 15 chr12 16340391 16340523 -104917007 - Lx9 LINE L1 -213 7431 7302 5 709 961 222 0 48 chr12 16340577 16340785 -104916745 - B3A SINE B2 0 198 1 5 709 873 265 36 55 chr12 16341232 16341654 -104915876 + L1MA4 LINE L1 5628 6050 -1410 5 709 243 252 179 43 chr12 16341856 16342018 -104915512 - L1MA6 LINE L1 -4 6296 6113 5 709 808 311 56 0 chr12 16342914 16343165 -104914365 + B4A SINE B4 1 265 -27 5 709 834 267 102 64 chr12 16344153 16344557 -104912973 + MTD LTR MaLR 1 419 0 5 709 255 333 0 0 chr12 16344816 16344891 -104912639 + B4 SINE B4 3 77 -215 5 709 1285 51 23 0 chr12 16344972 16345148 -104912382 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5 709 405 141 32 21 chr12 16345157 16345251 -104912279 + CT-rich Low_complexity Low_complexity 3 97 0 5 709 877 269 0 23 chr12 16347810 16348031 -104909499 + B3 SINE B2 1 216 0 5 709 198 0 0 0 chr12 16348480 16348502 -104909028 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 5 709 220 229 21 226 chr12 16348507 16348519 -104909011 - B2_Mm2 SINE B2 0 195 186 5 709 3646 39 2 0 chr12 16348519 16348952 -104908578 - L1Md_F2 LINE L1 -1 6581 6148 5 709 355 229 21 226 chr12 16348952 16349125 -104908405 - B3A SINE B2 -25 191 48 5 709 21 0 0 0 chr12 16349125 16349146 -104908384 + AT_rich Low_complexity Low_complexity 1 21 0 5 709 641 13 13 0 chr12 16349174 16349252 -104908278 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 709 1825 222 5 13 chr12 16349252 16349648 -104907882 + MTD LTR MaLR 22 414 -5 5 709 1082 73 15 0 chr12 16349648 16349784 -104907746 + B1_Mus1 SINE Alu 1 138 -10 5 709 232 48 23 23 chr12 16349784 16349827 -104907703 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 709 279 0 0 0 chr12 16349831 16349862 -104907668 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 709 311 265 69 0 chr12 16349949 16350051 -104907479 - L1M2 LINE L1 -1000 5143 5035 5 709 1084 104 6 0 chr12 16350077 16350241 -104907289 + URR1A DNA MER1_type 62 226 0 5 709 853 272 28 75 chr12 16350265 16350623 -104906907 - L1M2 LINE L1 -1142 5001 4661 5 709 399 248 70 7 chr12 16350633 16350775 -104906755 + L1MA7 LINE L1 5158 5308 -835 5 709 278 271 42 92 chr12 16350788 16350897 -104906633 + ID_B1 SINE B4 90 187 -37 5 709 3550 158 91 9 chr12 16350897 16351537 -104905993 + RLTR17 LTR ERVK 1 692 0 5 709 278 271 42 92 chr12 16351537 16351569 -104905961 + ID_B1 SINE B4 188 224 0 5 709 818 280 117 149 chr12 16351607 16352257 -104905273 + L1MA7 LINE L1 5372 5945 -346 5 709 432 0 0 0 chr12 16352257 16352305 -104905225 + (TAA)n Simple_repeat Simple_repeat 1 48 0 5 709 818 301 139 25 chr12 16352305 16352585 -104904945 + L1MA7 LINE L1 5946 6264 -27 5 709 690 35 0 0 chr12 16353358 16353443 -104904087 + (TC)n Simple_repeat Simple_repeat 1 85 0 5 709 315 104 0 0 chr12 16353443 16353490 -104904040 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 709 288 347 19 32 chr12 16356096 16356251 -104901279 + MIR SINE MIR 37 189 -73 5 709 838 119 14 0 chr12 16356508 16356651 -104900879 + (GGAA)n Simple_repeat Simple_repeat 4 148 0 5 709 406 188 99 0 chr12 16356689 16356790 -104900740 + ORR1C2 LTR MaLR 1 111 -263 5 709 2466 155 18 7 chr12 16356840 16357275 -104900255 + RMER4A LTR ERVK 18 457 -9 5 709 672 124 0 0 chr12 16357312 16357417 -104900113 + (TC)n Simple_repeat Simple_repeat 1 105 0 5 709 761 201 140 11 chr12 16357419 16357605 -104899925 + ORR1C2 LTR MaLR 174 383 -1 5 709 674 251 51 132 chr12 16359368 16359385 -104898145 + L1MD1 LINE L1 5622 5636 -606 5 709 1595 245 33 0 chr12 16359385 16359752 -104897778 + MTE2b LTR MaLR 1 379 0 5 709 674 251 51 132 chr12 16359752 16360128 -104897402 + L1MD1 LINE L1 5637 5983 -259 5 709 1585 138 26 6 chr12 16360154 16360457 -104897073 + RMER6A LTR ERVK 57 372 -318 5 709 3792 209 39 38 chr12 16360523 16361506 -104896024 + RLTR25A LTR ERVK 5 1028 0 5 709 2259 143 2 13 chr12 16361506 16361902 -104895628 + RMER6A LTR ERVK 365 756 0 5 709 368 216 137 74 chr12 16361920 16362110 -104895420 + L1MD1 LINE L1 6036 6237 -5 5 709 189 0 0 0 chr12 16362164 16362185 -104895345 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 5 709 333 47 0 0 chr12 16362185 16362228 -104895302 + (CTTTG)n Simple_repeat Simple_repeat 2 44 0 5 709 255 31 0 0 chr12 16362318 16362350 -104895180 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 709 625 314 93 31 chr12 16362352 16362769 -104894761 + L1ME1 LINE L1 5734 6176 -3 5 709 733 279 25 30 chr12 16362777 16362980 -104894550 - ID_B1 SINE B4 -19 205 4 6 709 4674 186 42 7 chr12 16364271 16365123 -104892407 + Lx5 LINE L1 6169 7050 0 6 709 485 71 14 0 chr12 16365289 16365359 -104892171 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 709 1260 86 0 0 chr12 16365364 16365539 -104891991 + (GGAAA)n Simple_repeat Simple_repeat 4 178 0 6 709 2109 128 18 50 chr12 16366617 16366686 -104890844 - ORR1A2 LTR MaLR 0 327 263 6 709 1180 68 0 0 chr12 16366686 16366834 -104890696 + B1_Mus1 SINE Alu 1 148 0 6 709 2109 128 18 50 chr12 16366834 16367102 -104890428 - ORR1A2 LTR MaLR -65 262 1 6 709 816 278 62 60 chr12 16367352 16367704 -104889826 - ORR1E LTR MaLR -6 353 1 6 709 280 297 152 35 chr12 16368144 16368249 -104889281 + Lx9 LINE L1 7388 7512 -132 6 709 441 0 0 0 chr12 16368249 16368298 -104889232 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 709 280 297 152 35 chr12 16368298 16368422 -104889108 + Lx9 LINE L1 7513 7644 0 6 709 554 279 12 12 chr12 16370620 16370783 -104886747 + RMER30 DNA MER1_type 2 164 -38 6 709 11615 149 54 13 chr12 16370838 16371247 -104886283 + Lx2 LINE L1 3740 4184 -1699 6 709 213 65 0 0 chr12 16371247 16371278 -104886252 + (ATATG)n Simple_repeat Simple_repeat 3 33 0 6 709 11615 140 54 14 chr12 16371278 16373326 -104884204 + Lx2 LINE L1 4185 6281 -716 6 709 3271 116 78 8 chr12 16373326 16373839 -104883691 + Lx2 LINE L1 6449 6997 0 6 709 308 275 113 62 chr12 16374168 16374233 -104883297 + Lx8 LINE L1 7263 7331 -142 6 709 186 43 0 0 chr12 16374233 16374256 -104883274 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 709 308 275 113 62 chr12 16374256 16374384 -104883146 + Lx8 LINE L1 7332 7466 -7 6 709 421 321 10 20 chr12 16375151 16375351 -104882179 + MLT1B LTR MaLR 8 205 -185 6 709 528 134 0 0 chr12 16375840 16375937 -104881593 + (ATG)n Simple_repeat Simple_repeat 1 97 0 6 709 859 210 50 6 chr12 16375962 16376144 -104881386 + B3A SINE B2 2 191 -7 6 709 1012 100 0 43 chr12 16377426 16377614 -104879916 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 709 4612 39 31 11 chr12 16377654 16378228 -104879302 - L1Md_F2 LINE L1 -1 6581 5996 6 709 649 289 84 16 chr12 16378228 16378418 -104879112 - B4A SINE B4 -86 206 4 6 709 354 23 0 0 chr12 16378902 16378945 -104878585 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 709 8261 41 3 2 chr12 16379973 16380958 -104876572 + L1Md_F2 LINE L1 5597 6582 0 6 709 451 282 70 41 chr12 16381037 16381281 -104876249 - L1M3 LINE L1 -2154 3986 3736 6 709 298 343 29 0 chr12 16381737 16381839 -104875691 + MLT1A1 LTR MaLR 23 127 -281 6 709 296 356 0 0 chr12 16381910 16382011 -104875519 + CT-rich Low_complexity Low_complexity 5 105 0 6 709 253 179 18 18 chr12 16382069 16382126 -104875404 + MLT1A1 LTR MaLR 248 304 -61 6 709 753 332 41 22 chr12 16382982 16382996 -104874534 - B4 SINE B4 -16 276 265 6 709 197 108 27 0 chr12 16382996 16383033 -104874497 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 709 753 332 41 22 chr12 16383033 16383289 -104874241 - B4 SINE B4 -28 264 1 6 710 658 330 75 61 chr12 16384206 16384729 -104872801 - MT2A LTR ERVL -3 530 1 6 710 658 257 81 145 chr12 16385814 16386124 -104871406 + B4 SINE B4 3 292 0 6 710 380 20 20 0 chr12 16386158 16386207 -104871323 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 710 750 253 94 0 chr12 16386755 16387000 -104870530 + MLT1B LTR MaLR 48 315 -75 6 710 234 0 0 0 chr12 16387052 16387078 -104870452 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 710 254 254 45 0 chr12 16387082 16387149 -104870381 + MER2B DNA MER2_type 217 286 -50 6 710 1092 119 0 0 chr12 16387584 16387752 -104869778 + (TC)n Simple_repeat Simple_repeat 2 169 0 6 710 568 286 41 41 chr12 16388488 16388685 -104868845 - B3A SINE B2 -1 197 1 6 710 339 175 0 0 chr12 16388802 16388859 -104868671 - MTE2b LTR MaLR -265 114 58 6 710 635 149 245 14 chr12 16388909 16389052 -104868478 + URR1A DNA MER1_type 35 210 -16 6 710 238 260 96 0 chr12 16389099 16389172 -104868358 - MTE2b LTR MaLR -299 80 1 6 710 257 105 39 26 chr12 16389805 16389883 -104867647 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 6 710 204 40 0 0 chr12 16390139 16390164 -104867366 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 6 710 475 175 24 16 chr12 16391058 16391309 -104866221 + (CA)n Simple_repeat Simple_repeat 1 253 0 6 710 468 0 0 0 chr12 16391683 16391735 -104865795 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 710 330 115 0 0 chr12 16391994 16392046 -104865484 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 710 393 145 0 0 chr12 16392046 16392122 -104865408 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 710 284 287 60 60 chr12 16392124 16392291 -104865239 - L1MA4 LINE L1 -369 5931 5765 6 710 1361 112 87 5 chr12 16392481 16392688 -104864842 - URR1A DNA MER1_type 0 226 3 6 710 571 352 25 50 chr12 16392861 16393139 -104864391 + B4A SINE B4 6 276 -16 6 710 1188 183 30 0 chr12 16393309 16393511 -104864019 + B3 SINE B2 3 210 -6 6 710 421 254 34 0 chr12 16393665 16393805 -104863725 + L1MB2 LINE L1 5760 5904 -279 6 710 831 278 47 15 chr12 16395012 16395286 -104862244 + B4A SINE B4 3 285 -7 6 710 320 262 90 19 chr12 16395899 16396042 -104861488 + L1MB5 LINE L1 4956 5105 -1041 6 710 221 250 19 0 chr12 16396114 16396166 -104861364 + GA-rich Low_complexity Low_complexity 5 57 0 6 710 478 241 10 17 chr12 16396192 16396365 -104861165 + L1MB5 LINE L1 5734 5902 -276 6 710 934 210 80 0 chr12 16398162 16398362 -104859168 + B3 SINE B2 1 216 0 6 710 312 206 16 0 chr12 16398545 16398608 -104858922 + RSINE1 SINE B4 78 141 -24 6 710 377 116 0 14 chr12 16398609 16398679 -104858851 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 710 778 278 85 31 chr12 16399123 16399447 -104858083 - MTD LTR MaLR 0 419 46 6 710 351 150 0 0 chr12 16399515 16399575 -104857955 + (GGGAGA)n Simple_repeat Simple_repeat 1 60 0 6 710 1003 304 65 18 chr12 16399590 16399928 -104857602 + MTE2b LTR MaLR 4 357 -22 6 710 4350 72 0 0 chr12 16399993 16400538 -104856992 + L1_Mus1 LINE L1 6023 6567 0 6 710 3105 117 19 4 chr12 16400737 16401201 -104856329 + Lx3C LINE L1 6500 6970 -6 6 710 1106 133 11 47 chr12 16401204 16401394 -104856136 - B2_Mm2 SINE B2 -8 187 5 6 710 925 149 11 56 chr12 16403100 16403278 -104854252 + ORR1D1 LTR MaLR 12 181 -193 6 710 638 139 7 0 chr12 16403280 16403417 -104854113 + (TC)n Simple_repeat Simple_repeat 1 138 0 6 710 386 219 38 136 chr12 16403454 16403586 -104853944 + PB1D9 SINE Alu 1 119 -1 6 710 901 274 45 51 chr12 16404637 16404929 -104852601 - B4 SINE B4 0 292 3 6 710 392 131 0 14 chr12 16406707 16406777 -104850753 + (TATG)n Simple_repeat Simple_repeat 4 72 0 6 710 780 120 13 7 chr12 16407642 16407793 -104849737 + (TG)n Simple_repeat Simple_repeat 2 153 0 6 710 201 246 35 0 chr12 16407808 16407865 -104849665 + (TATG)n Simple_repeat Simple_repeat 2 60 0 6 710 561 135 29 0 chr12 16408006 16408110 -104849420 - URR1B DNA MER1_type -2 223 117 6 710 2040 138 73 3 chr12 16408906 16409247 -104848283 + ORR1B1 LTR MaLR 1 365 -29 6 710 304 333 0 0 chr12 16409259 16409361 -104848169 - B4A SINE B4 -63 229 128 6 710 219 103 0 0 chr12 16409681 16409720 -104847810 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 6 710 391 277 60 20 chr12 16411106 16411257 -104846273 - MLT1A0 LTR MaLR 0 365 209 6 710 263 122 20 0 chr12 16411464 16411513 -104846017 + (CATA)n Simple_repeat Simple_repeat 2 51 0 6 710 202 163 47 0 chr12 16412007 16412050 -104845480 - L3 LINE CR1 -163 4326 4282 6 710 340 286 21 98 chr12 16412511 16412705 -104844825 - MTE2a LTR MaLR -200 179 1 6 710 1600 206 18 80 chr12 16413176 16413576 -104843954 - RLTR1B LTR ERV1 0 512 138 6 710 459 0 0 0 chr12 16413694 16413745 -104843785 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 6 710 41 82 0 22 chr12 16413755 16413892 -104843638 + AT_rich Low_complexity Low_complexity 1 134 0 6 710 4346 149 44 20 chr12 16413942 16414813 -104842717 - RLTR13D6 LTR ERVK 0 929 1 6 710 39749 61 1 23 chr12 16415646 16422558 -104834972 - L1Md_T LINE L1 0 6582 99 6 710 6438 77 23 11 chr12 16422630 16424257 -104833273 - L1VL2 LINE L1 -1789 1826 178 6 710 4699 81 63 38 chr12 16424269 16425002 -104832528 + RMER17A LTR ERVK 1 751 0 6 710 17913 95 19 24 chr12 16425002 16426872 -104830658 - Lx3_Mus LINE L1 -25 6984 5116 6 710 4329 57 30 0 chr12 16426872 16427415 -104830115 - L1_Mus1 LINE L1 0 6567 6009 6 710 17913 87 8 44 chr12 16427415 16429318 -104828212 - Lx3_Mus LINE L1 -771 5115 3287 6 710 1159 157 28 0 chr12 16429304 16429522 -104828008 - Lx3_Mus LINE L1 -6108 876 676 6 710 481 303 35 58 chr12 16429530 16429789 -104827741 - Lx3_Mus LINE L1 -6524 460 208 6 710 612 0 0 0 chr12 16430005 16430073 -104827457 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 710 2223 163 13 0 chr12 16430582 16430957 -104826573 + ORR1B1 LTR MaLR 1 380 -14 6 710 183 258 45 15 chr12 16432134 16432201 -104825329 - MIRc SINE MIR -3 265 197 6 710 315 49 0 0 chr12 16432207 16432248 -104825282 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 710 219 170 0 0 chr12 16433427 16433474 -104824056 + GA-rich Low_complexity Low_complexity 2 48 0 6 710 360 0 0 0 chr12 16433627 16433667 -104823863 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 710 481 281 83 17 chr12 16433668 16433849 -104823681 - MLT1B LTR MaLR -29 361 169 6 710 237 360 0 0 chr12 16433854 16433929 -104823601 - ID4_ SINE ID -2 81 7 6 710 289 307 118 18 chr12 16433919 16434088 -104823442 - MLT1B LTR MaLR -204 186 1 6 710 463 336 152 17 chr12 16434089 16434242 -104823288 - MLT1B-int LTR MaLR -5 1366 1172 6 710 540 0 0 0 chr12 16434242 16434302 -104823228 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 710 198 0 0 0 chr12 16434302 16434323 -104823207 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 710 463 336 152 17 chr12 16434323 16434465 -104823065 - MLT1B-int LTR MaLR -200 1171 1031 6 710 414 0 0 0 chr12 16434478 16434524 -104823006 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 6 710 860 195 0 0 chr12 16434524 16434673 -104822857 + RLTR17 LTR ERVK 219 367 -325 6 710 2994 53 42 3 chr12 16435854 16436235 -104821295 + MTA_Mm LTR MaLR 1 396 0 6 710 184 267 33 55 chr12 16438498 16438589 -104818941 + MIRb SINE MIR 161 249 -19 6 710 218 348 22 0 chr12 16439380 16439469 -104818061 - MIRb SINE MIR -73 195 105 6 710 735 324 42 0 chr12 16440399 16440637 -104816893 - B4A SINE B4 -40 252 5 6 710 444 19 0 0 chr12 16440883 16440936 -104816594 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 710 473 253 89 50 chr12 16441421 16441600 -104815930 - MER53 DNA hAT -6 187 2 7 710 789 211 74 20 chr12 16441943 16441991 -104815539 - B3 SINE B2 0 216 170 7 710 2357 104 28 0 chr12 16441991 16442309 -104815221 + ORR1A2 LTR MaLR 1 327 0 7 710 789 211 74 20 chr12 16442309 16442463 -104815067 - B3 SINE B2 -47 169 3 7 710 689 284 26 0 chr12 16442684 16442874 -104814656 - Lx8 LINE L1 -183 7290 7096 7 710 290 299 0 0 chr12 16443731 16443808 -104813722 - MLT1J2 LTR MaLR -128 320 244 7 710 681 301 30 54 chr12 16444564 16444862 -104812668 + B4A SINE B4 2 292 0 7 710 241 255 0 0 chr12 16444863 16444914 -104812616 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 7 710 603 200 6 44 chr12 16444918 16445288 -104812242 + (CATA)n Simple_repeat Simple_repeat 1 355 0 7 710 264 365 46 42 chr12 16446106 16446346 -104811184 + MIR SINE MIR 8 248 -14 7 710 183 186 0 0 chr12 16446389 16446432 -104811098 + (CAT)n Simple_repeat Simple_repeat 2 44 0 7 710 1881 231 23 13 chr12 16447653 16448039 -104809491 + Lx6 LINE L1 7045 7434 -26 7 710 597 336 103 4 chr12 16449005 16449238 -104808292 + B4 SINE B4 36 291 -1 7 710 1097 217 115 56 chr12 16449521 16449878 -104807652 - MTD LTR MaLR 0 419 42 7 710 243 0 0 0 chr12 16450969 16450996 -104806534 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 710 504 0 0 0 chr12 16450996 16451051 -104806479 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 710 482 329 92 42 chr12 16451087 16451347 -104806183 - B4 SINE B4 -11 281 9 7 710 1065 264 13 56 chr12 16452488 16452793 -104804737 + B4A SINE B4 1 292 0 7 710 357 207 0 0 chr12 16452823 16452910 -104804620 + GA-rich Low_complexity Low_complexity 1 87 0 7 710 310 274 87 19 chr12 16453047 16453151 -104804379 + PB1D9 SINE Alu 1 111 -9 7 710 636 14 0 0 chr12 16453175 16453248 -104804282 + (TTTTG)n Simple_repeat Simple_repeat 5 77 0 7 710 1152 73 10 10 chr12 16453492 16453702 -104803828 + (TC)n Simple_repeat Simple_repeat 1 210 0 7 710 1624 267 180 16 chr12 16453722 16454404 -104803126 - Lx8 LINE L1 0 7473 6680 7 710 2581 83 3 0 chr12 16455107 16455433 -104802097 + ORR1A2 LTR MaLR 1 327 0 7 710 186 43 0 0 chr12 16455750 16455773 -104801757 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 7 710 318 312 13 0 chr12 16455798 16455875 -104801655 - RSINE1 SINE B4 -86 79 2 7 710 340 223 31 41 chr12 16455963 16456052 -104801478 + Lx8 LINE L1 7373 7462 -11 7 710 3350 179 16 13 chr12 16456052 16456667 -104800863 + Lx5 LINE L1 6434 7050 0 7 710 901 122 14 7 chr12 16456821 16456962 -104800568 + B1_Mus1 SINE Alu 6 147 -1 7 710 513 47 0 0 chr12 16456970 16457034 -104800496 + (GGGA)n Simple_repeat Simple_repeat 3 66 0 7 710 1233 0 0 0 chr12 16457034 16457170 -104800360 + (GAGAA)n Simple_repeat Simple_repeat 3 139 0 7 710 320 306 130 14 chr12 16457305 16457451 -104800079 - RSINE1 SINE B4 -1 164 2 7 710 471 35 0 0 chr12 16458802 16458859 -104798671 + (CATA)n Simple_repeat Simple_repeat 2 58 0 7 710 735 44 0 0 chr12 16458866 16458957 -104798573 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 7 710 1785 200 37 0 chr12 16458992 16459183 -104798347 - ORR1D1 LTR MaLR -1 373 171 7 710 636 67 0 0 chr12 16459183 16459273 -104798257 + (GA)n Simple_repeat Simple_repeat 1 90 0 7 710 1785 200 37 0 chr12 16459273 16459436 -104798094 - ORR1D1 LTR MaLR -204 170 7 7 710 353 22 0 21 chr12 16459437 16459484 -104798046 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 710 1131 237 128 26 chr12 16460630 16460981 -104796549 - MTD LTR MaLR 0 419 33 7 710 3156 236 132 52 chr12 16460987 16462152 -104795378 - MTD-int LTR MaLR 0 1258 1 7 710 1130 230 125 22 chr12 16462161 16462527 -104795003 - MTD LTR MaLR -14 405 2 7 710 560 287 0 0 chr12 16462594 16462737 -104794793 + B3 SINE B2 1 143 -73 7 710 432 0 0 0 chr12 16462739 16462787 -104794743 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 710 426 278 201 0 chr12 16463186 16463355 -104794175 + ID_B1 SINE B4 4 206 -18 7 710 541 242 0 48 chr12 16463917 16464043 -104793487 + PB1D7 SINE Alu 1 120 0 7 710 9228 53 0 0 chr12 16464683 16465910 -104791620 - L1Md_F2 LINE L1 -595 5987 4761 7 710 4229 70 37 11 chr12 16465910 16466483 -104791047 + L1Md_F2 LINE L1 5983 6570 -12 7 710 852 90 52 8 chr12 16466483 16466617 -104790913 + L1_Mus2 LINE L1 6427 6566 0 7 710 646 289 18 36 chr12 16466639 16466858 -104790672 + B4 SINE B4 1 215 -77 7 710 608 38 13 0 chr12 16466858 16466937 -104790593 + (AAATG)n Simple_repeat Simple_repeat 1 80 0 7 710 291 335 108 70 chr12 16466959 16467200 -104790330 + B4 SINE B4 27 276 -16 7 710 483 246 12 12 chr12 16467289 16467458 -104790072 + GA-rich Low_complexity Low_complexity 4 172 0 7 710 264 30 0 0 chr12 16467464 16467497 -104790033 + (CAGA)n Simple_repeat Simple_repeat 1 33 0 7 710 540 262 26 58 chr12 16468498 16468652 -104788878 - B1F2 SINE Alu 0 149 1 7 710 201 74 0 0 chr12 16468702 16468729 -104788801 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 7 710 4620 156 47 13 chr12 16469222 16470058 -104787472 + Lx4B LINE L1 6195 7058 0 7 710 207 94 29 86 chr12 16470685 16470755 -104786775 + (CAGAGA)n Simple_repeat Simple_repeat 6 71 0 7 710 287 118 162 81 chr12 16471134 16471208 -104786322 - PB1D9 SINE Alu 0 120 41 7 710 315 0 0 0 chr12 16471801 16471836 -104785694 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 710 359 121 0 0 chr12 16473124 16473182 -104784348 - ORR1B1 LTR MaLR 0 394 337 7 710 2938 62 0 5 chr12 16473188 16473563 -104783967 - L1_Mus2 LINE L1 0 6566 6194 7 710 1181 30 0 0 chr12 16473563 16473698 -104783832 + L1_Mus2 LINE L1 6053 6187 -379 7 710 2001 123 81 6 chr12 16473698 16474032 -104783498 - ORR1B1 LTR MaLR -35 359 1 7 710 297 0 0 0 chr12 16474186 16474219 -104783311 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 710 392 342 102 40 chr12 16474357 16474631 -104782899 - B4A SINE B4 0 292 2 7 710 1221 31 13 0 chr12 16474664 16474823 -104782707 + B2_Mm2 SINE B2 1 161 -34 7 710 405 0 0 0 chr12 16474823 16474868 -104782662 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 7 710 618 299 52 85 chr12 16474963 16475234 -104782296 - ORR1E LTR MaLR 0 359 102 7 710 878 156 207 11 chr12 16475234 16475422 -104782108 - URR1B DNA MER1_type 0 225 1 7 710 618 299 52 85 chr12 16475422 16475516 -104782014 - ORR1E LTR MaLR -258 101 6 7 710 1510 282 78 32 chr12 16475804 16476266 -104781264 + Lx6 LINE L1 6959 7441 -19 7 710 270 0 0 0 chr12 16476294 16476324 -104781206 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 710 2555 165 30 0 chr12 16476788 16477194 -104780336 - MTC LTR MaLR -3 418 1 7 710 5479 162 93 27 chr12 16477195 16478373 -104779157 - MTC-int LTR MaLR -1 1257 2 7 710 1641 163 99 84 chr12 16478382 16478475 -104779055 - MTC LTR MaLR -21 400 308 7 710 184 59 29 29 chr12 16478475 16478510 -104779020 + (CAGGA)n Simple_repeat Simple_repeat 1 35 0 7 710 1641 163 99 84 chr12 16478510 16478736 -104778794 - MTC LTR MaLR -114 307 75 7 710 601 97 10 10 chr12 16478736 16478840 -104778690 - Lx4A LINE L1 0 7058 6955 7 710 1641 163 99 84 chr12 16478840 16478913 -104778617 - MTC LTR MaLR -347 74 2 7 710 548 301 78 17 chr12 16479506 16479736 -104777794 + MLT1A0 LTR MaLR 65 308 -57 7 710 740 225 171 46 chr12 16479914 16480194 -104777336 + RLTR28B LTR ERVL 2 316 -165 7 710 34 55 0 0 chr12 16480569 16480624 -104776906 + AT_rich Low_complexity Low_complexity 1 55 0 7 710 326 276 41 57 chr12 16481038 16481161 -104776369 + MIRb SINE MIR 90 210 -58 7 710 324 309 52 0 chr12 16481988 16482085 -104775445 - PB1D10 SINE Alu -10 107 6 7 710 605 250 8 0 chr12 16482004 16482132 -104775398 - ID_B1 SINE B4 -57 167 39 7 710 514 61 40 20 chr12 16482145 16482246 -104775284 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 7 710 195 139 0 0 chr12 16483835 16483871 -104773659 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 7 710 237 312 50 70 chr12 16484297 16484397 -104773133 + MLT1H2 LTR MaLR 54 151 -338 7 710 783 299 155 31 chr12 16484963 16485138 -104772392 + MLT1D LTR MaLR 5 191 -314 7 710 928 47 0 0 chr12 16485138 16485266 -104772264 + L1Md_F2 LINE L1 6454 6581 -1 7 710 783 299 155 31 chr12 16485266 16485536 -104771994 + MLT1D LTR MaLR 192 504 -1 7 710 1008 143 0 0 chr12 16485624 16485792 -104771738 + (GAAAA)n Simple_repeat Simple_repeat 3 170 0 7 710 358 333 35 83 chr12 16486117 16486261 -104771269 + MER77 LTR ERVL 21 157 -450 7 710 242 331 36 50 chr12 16486469 16486609 -104770921 + MER77 LTR ERVL 470 607 0 7 710 213 121 0 0 chr12 16487314 16487347 -104770183 + (GGGAGA)n Simple_repeat Simple_repeat 3 35 0 7 710 186 192 0 0 chr12 16487490 16487542 -104769988 + CT-rich Low_complexity Low_complexity 1 52 0 7 710 226 269 73 31 chr12 16488038 16488134 -104769396 + Charlie5 DNA MER1_type 6 105 -2519 7 710 780 217 142 5 chr12 16488142 16488332 -104769198 - B3 SINE B2 0 216 1 7 710 256 253 25 12 chr12 16488361 16488441 -104769089 - MER3 DNA MER1_type -100 109 29 7 710 690 299 44 75 chr12 16488653 16489040 -104768490 + MTEa LTR MaLR 3 377 -2 7 710 422 281 29 36 chr12 16489112 16489252 -104768278 + B1F2 SINE Alu 2 140 -9 7 710 22 0 0 0 chr12 16489739 16489761 -104767769 + AT_rich Low_complexity Low_complexity 1 22 0 7 710 691 243 116 78 chr12 16490241 16490602 -104766928 + RMER17C LTR ERVK 1 375 -35 7 710 405 0 0 0 chr12 16491390 16491435 -104766095 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 710 182 133 0 0 chr12 16491959 16491989 -104765541 - MIR SINE MIR -76 186 157 7 710 716 306 82 25 chr12 16491991 16492356 -104765174 + MLT1B LTR MaLR 3 388 -2 7 710 829 305 52 19 chr12 16492529 16492837 -104764693 - MTE2b LTR MaLR -2 377 60 7 710 381 43 0 0 chr12 16492978 16493025 -104764505 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 710 804 152 0 0 chr12 16493025 16493327 -104764203 + (TG)n Simple_repeat Simple_repeat 1 302 0 7 710 23 0 0 29 chr12 16493602 16493618 -104763912 + AT_rich Low_complexity Low_complexity 1 16 0 7 710 442 62 0 44 chr12 16493618 16493686 -104763844 + L1_Mus2 LINE L1 6501 6565 -1 7 710 23 0 0 29 chr12 16493686 16493703 -104763827 + AT_rich Low_complexity Low_complexity 1 17 0 7 710 281 262 27 27 chr12 16494248 16494358 -104763172 + Charlie16a DNA MER1_type 136 245 -97 7 710 1459 276 68 10 chr12 16496583 16496979 -104760551 - Lx8 LINE L1 -864 6609 6191 8 710 259 176 28 56 chr12 16497079 16497151 -104760379 - MTEb LTR MaLR -16 363 294 8 710 38 0 0 0 chr12 16497365 16497403 -104760127 + AT_rich Low_complexity Low_complexity 1 38 0 8 710 705 186 14 14 chr12 16497629 16497771 -104759759 + B1_Mus1 SINE Alu 6 147 -1 8 710 234 0 0 0 chr12 16497788 16497814 -104759716 + (TGGA)n Simple_repeat Simple_repeat 2 27 0 8 710 414 0 0 0 chr12 16497814 16497860 -104759670 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 710 386 291 158 0 chr12 16497861 16497988 -104759542 - B3A SINE B2 -50 148 2 8 710 340 270 52 126 chr12 16498329 16498503 -104759027 - MLT1A LTR MaLR -202 172 1 8 710 394 314 74 51 chr12 16499128 16499343 -104758187 + B4A SINE B4 1 220 -72 8 710 603 0 0 0 chr12 16499426 16499493 -104758037 + (TC)n Simple_repeat Simple_repeat 1 67 0 8 710 342 0 0 0 chr12 16499493 16499530 -104758000 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 710 185 323 0 31 chr12 16499658 16499722 -104757808 - L3 LINE CR1 -2 4487 4426 8 710 1001 291 84 36 chr12 16500007 16500339 -104757191 + MTEa LTR MaLR 26 373 -6 1 710 751 250 79 54 chr12 16500605 16500884 -104756646 + B4A SINE B4 5 290 -2 2 710 248 223 8 30 chr12 16500909 16500958 -104756572 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 3 710 3149 75 2 5 chr12 16500958 16501359 -104756171 - MTB LTR MaLR 0 400 1 4 710 248 223 8 30 chr12 16501359 16501443 -104756087 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 5 710 256 314 55 31 chr12 16502058 16502186 -104755344 - MIRb SINE MIR -47 221 91 6 710 21 36 0 0 chr12 16503217 16503245 -104754285 + AT_rich Low_complexity Low_complexity 1 28 0 7 710 22 0 0 0 chr12 16503458 16503480 -104754050 + AT_rich Low_complexity Low_complexity 1 22 0 8 710 351 65 0 0 chr12 16503694 16503740 -104753790 + (TA)n Simple_repeat Simple_repeat 1 46 0 9 710 1618 176 115 6 chr12 16504195 16504516 -104753014 - MTC LTR MaLR 0 421 66 1 710 669 13 0 0 chr12 16504531 16504609 -104752921 + (GGAA)n Simple_repeat Simple_repeat 1 78 0 1 710 1363 169 0 30 chr12 16505605 16505837 -104751693 + URR1B DNA MER1_type 1 225 0 1 710 649 167 31 0 chr12 16506893 16506904 -104750626 + polypyrimidine Low_complexity Low_complexity 158 168 0 1 710 926 78 0 53 chr12 16506904 16507094 -104750436 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 710 649 167 31 0 chr12 16507094 16507244 -104750286 + CT-rich Low_complexity Low_complexity 3 157 0 1 710 510 309 58 26 chr12 16507446 16507602 -104749928 + B4A SINE B4 111 271 -21 1 710 393 39 0 0 chr12 16508355 16508406 -104749124 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 710 369 0 0 0 chr12 16508851 16508892 -104748638 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 710 1801 288 120 37 chr12 16509111 16509955 -104747575 + Lx8 LINE L1 6332 7245 -228 1 710 334 289 52 0 chr12 16510006 16510103 -104747427 + PB1D10 SINE Alu 4 105 -12 2 710 441 285 196 32 chr12 16510200 16510450 -104747080 + B4 SINE B4 2 292 0 2 710 385 296 0 0 chr12 16510450 16510558 -104746972 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 710 228 242 21 32 chr12 16510572 16510666 -104746864 - Lx8 LINE L1 -1641 5832 5740 2 710 540 0 0 0 chr12 16510763 16510823 -104746707 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 710 580 304 32 16 chr12 16511131 16511328 -104746202 + B3A SINE B2 1 214 -2 2 710 722 149 122 215 chr12 16512194 16512323 -104745207 + URR1A DNA MER1_type 3 157 -69 2 710 1155 82 0 0 chr12 16512323 16512469 -104745061 + B1_Mus1 SINE Alu 2 147 -1 2 710 6105 98 27 22 chr12 16512473 16513361 -104744169 + Lx3B LINE L1 6079 6970 -3 2 710 722 149 122 215 chr12 16513361 16513473 -104744057 + URR1A DNA MER1_type 158 226 0 2 710 504 286 216 79 chr12 16514043 16514297 -104743233 + B4A SINE B4 1 289 -3 2 710 782 231 153 35 chr12 16514299 16514528 -104743002 + RMER1A Other Other 103 358 -672 3 711 923 267 19 129 chr12 16515178 16515291 -104742239 - B4 SINE B4 0 292 214 3 711 336 24 0 0 chr12 16515291 16515332 -104742198 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 3 711 923 267 19 129 chr12 16515332 16515536 -104741994 - B4 SINE B4 -79 213 10 3 711 389 167 108 42 chr12 16517147 16517285 -104740245 + ORR1C2 LTR MaLR 219 384 0 3 711 261 305 49 90 chr12 16517285 16517429 -104740101 - MTD LTR MaLR -276 143 6 3 711 211 367 48 4 chr12 16517559 16517708 -104739822 - MIRc SINE MIR -101 167 12 3 711 253 283 130 24 chr12 16518360 16518483 -104739047 - L2a LINE L2 -25 3401 3266 3 711 2186 259 52 43 chr12 16518502 16519132 -104738398 + Lx8 LINE L1 6512 7147 -326 3 711 291 276 66 66 chr12 16519130 16519297 -104738233 + Lx8 LINE L1 7301 7467 -6 3 711 524 293 50 91 chr12 16519342 16519541 -104737989 + Tigger5 DNA MER2_type 50 240 -2166 3 711 313 331 47 24 chr12 16519521 16519648 -104737882 + Tigger5 DNA MER2_type 2276 2405 -1 3 711 518 349 89 24 chr12 16520052 16520343 -104737187 - MLT1B LTR MaLR -32 358 49 3 711 200 281 30 30 chr12 16520483 16520549 -104736981 + MIRc SINE MIR 96 161 -107 4 711 305 337 60 49 chr12 16520715 16520899 -104736631 + ORR1D2 LTR MaLR 1 186 -184 4 711 341 244 80 160 chr12 16521519 16521707 -104735823 - MTEa LTR MaLR -4 375 205 4 711 938 252 60 25 chr12 16524080 16524361 -104733169 + Lx8 LINE L1 7111 7401 -72 4 711 603 0 0 0 chr12 16524378 16524445 -104733085 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 4 711 324 0 0 0 chr12 16525273 16525309 -104732221 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 711 432 0 0 0 chr12 16525309 16525357 -104732173 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 4 711 202 231 0 0 chr12 16525407 16525446 -104732084 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 4 711 596 311 116 30 chr12 16525605 16525940 -104731590 + LTR37A LTR ERV1 42 405 -21 4 711 342 0 0 0 chr12 16526005 16526043 -104731487 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 711 257 304 0 0 chr12 16526139 16526195 -104731335 + tRNA-Ala-GCY_ tRNA tRNA 9 64 -11 5 711 777 107 0 0 chr12 16526200 16526322 -104731208 + (CA)n Simple_repeat Simple_repeat 2 123 0 5 711 674 286 131 0 chr12 16526370 16526476 -104731054 - ID_B1 SINE B4 0 224 97 5 711 360 0 0 0 chr12 16526476 16526516 -104731014 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 711 674 286 131 0 chr12 16526516 16526584 -104730946 - ID_B1 SINE B4 -128 96 28 5 711 201 227 0 0 chr12 16526685 16526729 -104730801 + (CCTG)n Simple_repeat Simple_repeat 2 45 0 5 711 189 0 0 0 chr12 16527090 16527111 -104730419 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 711 231 92 29 71 chr12 16527108 16527178 -104730352 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 5 711 874 252 92 54 chr12 16527277 16527393 -104730137 + MLT2D LTR ERVL 6 116 -298 5 711 583 273 0 0 chr12 16527393 16527536 -104729994 + B1F2 SINE Alu 2 144 -5 5 711 874 253 88 54 chr12 16527536 16527745 -104729785 + MLT2D LTR ERVL 117 474 -82 5 711 3369 38 5 0 chr12 16527757 16528151 -104729379 + MTA_Mm LTR MaLR 1 396 0 5 711 248 299 122 30 chr12 16528274 16528289 -104729241 + LTR86A2 LTR ERVL 366 384 -124 6 711 840 20 0 0 chr12 16528289 16528387 -104729143 + (CTCTG)n Simple_repeat Simple_repeat 3 100 0 6 711 248 299 122 30 chr12 16528387 16528502 -104729028 + LTR86A2 LTR ERVL 385 508 0 6 711 1005 209 102 30 chr12 16529916 16530182 -104727348 - MTD LTR MaLR -133 286 2 6 711 816 156 85 23 chr12 16530491 16530668 -104726862 + B2_Mm2 SINE B2 1 188 -7 6 711 27 0 0 0 chr12 16531928 16531955 -104725575 + AT_rich Low_complexity Low_complexity 1 27 0 6 711 2548 96 31 94 chr12 16531958 16532405 -104725125 - MTC LTR MaLR -2 419 1 6 711 215 361 12 12 chr12 16532856 16532940 -104724590 + L2 LINE L2 2372 2455 -964 6 711 477 0 0 0 chr12 16533449 16533502 -104724028 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 711 1312 154 22 9 chr12 16533972 16534195 -104723335 - URR1A DNA MER1_type 0 226 1 6 711 232 341 29 58 chr12 16534624 16534761 -104722769 - LTR86B1 LTR ERVL -189 304 172 6 711 1942 175 96 5 chr12 16536268 16536652 -104720878 - MTD LTR MaLR 0 419 1 7 711 294 211 77 26 chr12 16536921 16536999 -104720531 - ID4 SINE ID -1 82 1 7 711 182 281 0 109 chr12 16537131 16537195 -104720335 + L2 LINE L2 1567 1623 -1796 7 711 289 0 0 47 chr12 16537201 16537244 -104720286 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 7 711 516 202 134 61 chr12 16537253 16537445 -104720085 - MTD LTR MaLR -42 377 178 7 711 414 100 0 0 chr12 16537448 16537508 -104720022 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 7 711 269 136 0 0 chr12 16537512 16537528 -104720002 + MT2B2 LTR ERVL 244 259 -325 7 711 654 182 32 16 chr12 16537528 16537651 -104719879 + B1_Mur3 SINE Alu 3 127 -22 7 711 699 253 60 0 chr12 16537613 16537779 -104719751 - MTD LTR MaLR -225 194 19 7 711 253 222 0 36 chr12 16537938 16537994 -104719536 + ID4 SINE ID 29 82 -1 7 711 280 231 0 0 chr12 16538339 16538391 -104719139 + ID4_ SINE ID 25 76 -7 7 711 286 243 141 51 chr12 16538388 16538466 -104719064 + ID_B1 SINE B4 94 178 -46 8 711 220 289 128 43 chr12 16538466 16538482 -104719048 + PB1D10 SINE Alu 13 114 -3 8 711 441 0 0 0 chr12 16538514 16538563 -104718967 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 711 766 220 12 19 chr12 16538575 16538737 -104718793 + B3 SINE B2 45 205 -11 8 711 362 286 73 22 chr12 16539886 16540022 -104717508 - MER5A DNA MER1_type 0 189 47 8 711 310 174 130 0 chr12 16540450 16540519 -104717011 + ID4_ SINE ID 5 82 -1 8 711 650 199 82 66 chr12 16540457 16540640 -104716890 + ID_B1 SINE B4 25 210 -14 8 711 443 289 35 0 chr12 16540652 16540766 -104716764 + B4A SINE B4 4 121 -171 8 711 1511 39 6 0 chr12 16540819 16540997 -104716533 - L1_Mus1 LINE L1 -105 6462 6284 8 711 724 21 21 0 chr12 16540997 16541091 -104716439 + L1_Mus1 LINE L1 6471 6566 -1 8 711 427 175 12 12 chr12 16541091 16541103 -104716427 - Lx LINE L1 -371 6283 6272 8 711 643 271 85 35 chr12 16542383 16542643 -104714887 - B4 SINE B4 -18 274 2 9 711 228 200 0 0 chr12 16543830 16543885 -104713645 + T-rich Low_complexity Low_complexity 1 55 0 9 711 234 0 0 0 chr12 16545095 16545121 -104712409 + (CGAG)n Simple_repeat Simple_repeat 4 29 0 9 711 266 306 71 9 chr12 16545969 16546081 -104711449 + MIR3 SINE MIR 39 157 -51 9 711 321 314 57 126 chr12 16546822 16546997 -104710533 + RSINE1 SINE B4 3 165 0 9 711 605 223 0 44 chr12 16547291 16547427 -104710103 - B1F SINE Alu -19 130 1 9 711 630 221 103 0 chr12 16548709 16548854 -104708676 + RSINE1 SINE B4 5 164 -1 9 711 408 71 0 0 chr12 16548861 16548917 -104708613 + (CATA)n Simple_repeat Simple_repeat 1 56 0 9 711 310 170 0 0 chr12 16549181 16549234 -104708296 - B3A SINE B2 -144 54 2 9 711 528 242 0 15 chr12 16549293 16549427 -104708103 + B1F2 SINE Alu 1 132 -17 9 711 463 331 65 7 chr12 16549623 16549778 -104707752 - RSINE1 SINE B4 0 165 2 1 711 261 293 93 68 chr12 16549808 16550119 -104707411 + L1M5 LINE L1 4272 4590 -1556 1 711 422 241 130 7 chr12 16550312 16550450 -104707080 - B4 SINE B4 -17 275 121 1 711 4203 177 50 14 chr12 16550466 16551253 -104706277 + RLTR40 LTR ERVK 3 817 0 1 711 207 0 0 0 chr12 16552206 16552229 -104705301 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1 711 23 0 0 0 chr12 16552247 16552270 -104705260 + AT_rich Low_complexity Low_complexity 1 23 0 1 711 1867 161 67 18 chr12 16552366 16552707 -104704823 + ORR1B2 LTR MaLR 1 358 -9 1 711 194 0 0 37 chr12 16553706 16553733 -104703797 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 711 502 314 32 0 chr12 16553745 16553901 -104703629 + RSINE1 SINE B4 3 163 -2 1 711 200 132 0 26 chr12 16554441 16554480 -104703050 + A-rich Low_complexity Low_complexity 1 38 0 1 711 1738 196 57 47 chr12 16556569 16556971 -104700559 - MTD LTR MaLR -1 418 13 1 711 221 28 0 77 chr12 16557280 16557319 -104700211 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1 711 623 239 127 31 chr12 16560073 16560302 -104697228 + B4A SINE B4 1 251 -41 1 711 555 16 0 0 chr12 16560472 16560536 -104696994 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 711 831 48 0 0 chr12 16560945 16561049 -104696481 + (GA)n Simple_repeat Simple_repeat 2 105 0 1 711 342 284 19 29 chr12 16561730 16561835 -104695695 + B1F SINE Alu 2 105 -44 1 711 219 211 0 0 chr12 16561911 16562006 -104695524 + (GCTG)n Simple_repeat Simple_repeat 2 96 0 1 711 666 58 0 0 chr12 16562006 16562093 -104695437 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 1 711 442 318 0 8 chr12 16562098 16562231 -104695299 - B1F1 SINE Alu -17 132 1 1 711 200 258 0 29 chr12 16562246 16562298 -104695232 + T-rich Low_complexity Low_complexity 19 70 0 1 711 701 140 82 75 chr12 16562298 16562445 -104695085 - B1_Mur1 SINE Alu -1 148 1 1 711 200 258 0 29 chr12 16562445 16562460 -104695070 + T-rich Low_complexity Low_complexity 5 18 0 1 711 620 289 42 28 chr12 16563448 16563736 -104693794 + B4A SINE B4 1 292 0 1 711 262 123 17 17 chr12 16563764 16563822 -104693708 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 711 822 243 93 31 chr12 16564693 16564950 -104692580 + MTE2b LTR MaLR 118 379 0 1 711 954 256 22 92 chr12 16568410 16568639 -104688891 + B4A SINE B4 1 229 -63 1 711 749 170 28 7 chr12 16568639 16568781 -104688749 + B1_Mur3 SINE Alu 3 147 -2 1 711 954 256 22 92 chr12 16568781 16568865 -104688665 + B4A SINE B4 230 292 0 1 711 488 195 19 7 chr12 16568865 16569020 -104688510 + (CA)n Simple_repeat Simple_repeat 1 157 0 1 711 351 98 0 0 chr12 16570896 16570957 -104686573 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 711 261 0 0 0 chr12 16571065 16571094 -104686436 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 711 414 0 0 0 chr12 16571094 16571139 -104686391 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 711 269 301 107 0 chr12 16571199 16571302 -104686228 + PB1D7 SINE Alu 6 119 -1 1 711 504 0 0 0 chr12 16573735 16573791 -104683739 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 711 269 222 168 53 chr12 16573815 16573910 -104683620 - PB1D9 SINE Alu -13 107 2 1 711 970 94 25 0 chr12 16574035 16574194 -104683336 + (TATATG)n Simple_repeat Simple_repeat 4 166 0 1 711 388 250 33 152 chr12 16574294 16574445 -104683085 + B3A SINE B2 58 190 -8 1 711 35 0 0 0 chr12 16574980 16575015 -104682515 + AT_rich Low_complexity Low_complexity 1 35 0 1 711 221 119 24 0 chr12 16575645 16575687 -104681843 + (GGA)n Simple_repeat Simple_repeat 3 45 0 1 711 433 324 32 49 chr12 16576703 16576888 -104680642 + B3A SINE B2 1 182 -16 1 711 22 56 0 0 chr12 16576917 16576953 -104680577 + AT_rich Low_complexity Low_complexity 1 36 0 1 711 472 259 22 83 chr12 16577395 16577422 -104680108 + B3A SINE B2 15 33 -165 1 711 1055 51 0 14 chr12 16577422 16577562 -104679968 + B1_Mm SINE Alu 3 140 -7 1 711 183 42 0 0 chr12 16577562 16577586 -104679944 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 711 713 212 17 40 chr12 16577586 16577769 -104679761 + B3 SINE B2 34 210 -6 1 711 322 236 13 13 chr12 16578269 16578411 -104679119 - ID_B1 SINE B4 -20 204 6 1 711 261 0 0 0 chr12 16578569 16578598 -104678932 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 711 346 115 0 0 chr12 16579129 16579181 -104678349 + MTE2b LTR MaLR 328 379 0 1 711 527 230 6 0 chr12 16579199 16579364 -104678166 + (TA)n Simple_repeat Simple_repeat 1 166 0 1 711 354 98 0 0 chr12 16579355 16579406 -104678124 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 711 328 264 11 44 chr12 16579794 16579885 -104677645 - MER106A DNA MER1_type -124 112 25 1 711 21 0 0 0 chr12 16580606 16580627 -104676903 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 482 0 0 17 chr12 16581235 16581294 -104676236 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 711 357 179 15 0 chr12 16581392 16581459 -104676071 - ID4_ SINE ID -9 74 7 1 711 344 268 113 0 chr12 16581465 16581562 -104675968 - PB1D10 SINE Alu -9 108 1 1 711 186 118 0 0 chr12 16581684 16581718 -104675812 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 711 702 233 36 24 chr12 16582050 16582217 -104675313 + ID_B1 SINE B4 1 169 -55 1 711 432 252 17 43 chr12 16582131 16582247 -104675283 + PB1D10 SINE Alu 5 117 0 1 711 1041 52 201 0 chr12 16582370 16582524 -104675006 + B2_Mm2 SINE B2 3 187 -8 1 711 691 271 24 0 chr12 16583174 16583344 -104674186 + ID_B1 SINE B4 8 181 -43 1 711 226 314 6 33 chr12 16583433 16583614 -104673916 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 1 711 709 299 37 40 chr12 16585047 16585319 -104672211 - B4A SINE B4 -20 272 2 1 711 480 308 84 71 chr12 16585450 16585579 -104671951 + L1MB5 LINE L1 5666 5818 -356 1 711 471 274 40 14 chr12 16585579 16585727 -104671803 + RSINE1 SINE B4 1 152 -13 1 711 480 308 84 71 chr12 16585727 16586048 -104671482 + L1MB5 LINE L1 5819 6122 -52 1 711 611 349 19 11 chr12 16586087 16586354 -104671176 + B4A SINE B4 24 292 0 1 711 325 266 117 0 chr12 16586990 16587084 -104670446 + MLT1G1 LTR MaLR 109 213 -366 1 711 319 21 42 0 chr12 16587247 16587295 -104670235 + (CCCTG)n Simple_repeat Simple_repeat 5 54 0 1 711 256 300 254 0 chr12 16588141 16588271 -104669259 - Lx8 LINE L1 -450 7023 6861 1 711 582 150 10 0 chr12 16588275 16588375 -104669155 + ORR1B1 LTR MaLR 1 101 -266 1 711 978 125 0 0 chr12 16588374 16588526 -104669004 + ORR1B1 LTR MaLR 236 387 -7 1 711 347 286 35 76 chr12 16588591 16588735 -104668795 + RSINE1 SINE B4 2 139 -26 1 711 888 249 48 52 chr12 16588803 16589112 -104668418 - Lx8 LINE L1 -719 6754 6447 1 711 255 231 0 0 chr12 16589307 16589359 -104668171 + B4A SINE B4 93 144 -148 1 711 525 374 53 11 chr12 16589955 16590239 -104667291 - RMER5 LTR ERV1 -12 522 227 1 711 538 230 118 7 chr12 16590287 16590423 -104667107 + ORR1D2 LTR MaLR 1 151 -219 1 711 312 301 68 0 chr12 16590428 16590531 -104666999 + B4A SINE B4 169 278 -14 1 711 501 74 2 0 chr12 16590532 16590625 -104666905 - ORR1A3 LTR MaLR 0 394 265 1 711 742 230 100 16 chr12 16590626 16590816 -104666714 + ID_B1 SINE B4 19 224 0 1 711 1223 122 102 0 chr12 16591517 16591722 -104665808 - URR1A DNA MER1_type 0 226 1 1 711 218 208 0 20 chr12 16592092 16592141 -104665389 + (TCTCTG)n Simple_repeat Simple_repeat 4 51 0 1 711 402 264 157 45 chr12 16592363 16592561 -104664969 + B4A SINE B4 8 227 -65 1 711 248 318 0 5 chr12 16592574 16592777 -104664753 + (CA)n Simple_repeat Simple_repeat 1 201 0 1 711 562 230 0 183 chr12 16592997 16593183 -104664347 - RSINE1 SINE B4 -12 153 2 1 711 415 303 0 47 chr12 16593533 16593682 -104663848 + RSINE1 SINE B4 5 146 -19 1 711 414 69 0 0 chr12 16593687 16593745 -104663785 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 711 255 31 0 0 chr12 16593745 16593777 -104663753 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 711 495 0 0 0 chr12 16594545 16594600 -104662930 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 711 407 272 23 31 chr12 16594693 16594822 -104662708 + B1F1 SINE Alu 2 129 -20 1 711 282 280 0 0 chr12 16596703 16596778 -104660752 + C-rich Low_complexity Low_complexity 1 75 0 1 711 611 254 100 26 chr12 16597077 16597267 -104660263 - ID_B1 SINE B4 -12 212 9 1 711 347 335 52 35 chr12 16597554 16597727 -104659803 - ID_B1 SINE B4 -17 207 32 1 711 181 298 177 21 chr12 16601014 16601110 -104656420 - MIR SINE MIR -86 176 66 1 711 259 146 0 0 chr12 16601272 16601313 -104656217 - URR1A DNA MER1_type -185 41 1 1 711 412 241 28 14 chr12 16602293 16602412 -104655118 - B1F1 SINE Alu 0 120 7 1 711 245 247 63 82 chr12 16602415 16602467 -104655063 - L1MEc LINE L1 -3816 2503 2461 1 711 606 203 43 7 chr12 16602467 16602606 -104654924 - B1_Mur2 SINE Alu -5 144 1 1 711 249 247 63 82 chr12 16602606 16602712 -104654818 - L1MEc LINE L1 -3859 2460 2348 1 711 654 330 79 45 chr12 16602713 16602786 -104654744 + MLT2B3 LTR ERVL 1 68 -486 1 711 231 36 0 0 chr12 16602786 16602814 -104654716 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 711 654 330 79 45 chr12 16602814 16602937 -104654593 + MLT2B3 LTR ERVL 69 198 -356 1 711 2622 123 32 10 chr12 16602937 16603349 -104654181 - MTC LTR MaLR 0 421 1 1 711 351 0 0 0 chr12 16603356 16603395 -104654135 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 711 654 330 79 45 chr12 16603395 16603544 -104653986 + MLT2B3 LTR ERVL 205 367 -187 1 711 936 220 58 0 chr12 16603672 16603863 -104653667 + B3 SINE B2 1 202 -14 1 711 747 191 15 0 chr12 16603887 16604023 -104653507 + B1_Mus2 SINE Alu 5 142 -5 1 711 598 322 40 79 chr12 16604080 16604106 -104653424 + ORR1E LTR MaLR 3 28 -331 1 711 3211 41 5 0 chr12 16604106 16604500 -104653030 + MTA_Mm LTR MaLR 1 396 0 1 711 598 322 40 79 chr12 16604500 16604827 -104652703 + ORR1E LTR MaLR 29 342 -17 1 711 312 239 127 8 chr12 16604862 16604980 -104652550 - L1MEc LINE L1 -5552 848 717 1 711 681 254 124 51 chr12 16605242 16605539 -104651991 - MLT1F1 LTR MaLR -194 354 43 1 711 459 255 96 51 chr12 16605802 16605959 -104651571 - B3A SINE B2 -1 197 34 1 711 359 312 363 0 chr12 16606576 16606733 -104650797 - ID_B1 SINE B4 -10 214 1 2 711 313 330 87 0 chr12 16606901 16607016 -104650514 + MLT1A LTR MaLR 1 125 -249 2 711 281 185 94 42 chr12 16607027 16607123 -104650407 + MLT1A LTR MaLR 221 321 -53 2 711 333 68 0 0 chr12 16608106 16608150 -104649380 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 711 215 362 60 47 chr12 16608311 16608516 -104649014 + MIRb SINE MIR 1 217 -51 2 711 501 97 0 0 chr12 16608631 16608703 -104648827 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 711 1722 165 56 48 chr12 16609023 16609379 -104648151 - ORR1D1 LTR MaLR 0 374 16 2 711 252 0 0 0 chr12 16609442 16609470 -104648060 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 711 803 97 36 0 chr12 16609471 16609636 -104647894 + (CAGA)n Simple_repeat Simple_repeat 2 172 0 2 711 237 128 0 0 chr12 16610121 16610168 -104647362 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 2 711 524 298 6 55 chr12 16610253 16610434 -104647096 + B4A SINE B4 6 177 -115 2 711 186 103 0 0 chr12 16610548 16610577 -104646953 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 711 899 286 19 34 chr12 16611357 16611621 -104645909 + B4 SINE B4 1 260 -32 2 711 246 32 0 0 chr12 16611622 16611653 -104645877 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 711 234 193 0 0 chr12 16612489 16612546 -104644984 + CT-rich Low_complexity Low_complexity 1 57 0 2 711 373 100 57 0 chr12 16612731 16612801 -104644729 + CT-rich Low_complexity Low_complexity 4 77 0 2 711 634 189 120 93 chr12 16613289 16613414 -104644116 - RCHARR1 DNA MER1_type 0 974 843 2 711 878 226 57 33 chr12 16613414 16613624 -104643906 + B3 SINE B2 1 215 -1 2 711 634 189 120 93 chr12 16613624 16613714 -104643816 - RCHARR1 DNA MER1_type -132 842 753 2 711 1495 230 113 43 chr12 16613719 16614142 -104643388 - RCHARR1 DNA MER1_type -513 461 9 2 711 195 209 206 11 chr12 16615436 16615528 -104642002 + L2b LINE L2 3315 3424 -2 2 711 2506 122 73 0 chr12 16616248 16616633 -104640897 - MTC LTR MaLR -8 413 1 2 711 1325 227 66 44 chr12 16616702 16617105 -104640425 - MTE2a LTR MaLR -16 403 2 2 711 457 246 160 47 chr12 16618492 16618705 -104638825 + RMER21B LTR ERV1 331 567 -275 2 711 227 184 0 39 chr12 16618701 16618752 -104638778 + RMER21B LTR ERV1 781 829 -13 2 711 779 246 88 5 chr12 16619519 16619711 -104637819 + B4 SINE B4 1 208 -84 2 711 236 139 0 0 chr12 16619732 16619768 -104637762 + B3A SINE B2 7 42 -156 2 711 1108 37 15 0 chr12 16619764 16619900 -104637630 + B1_Mus1 SINE Alu 11 148 0 2 711 189 0 0 0 chr12 16619902 16619923 -104637607 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 2 711 617 300 138 32 chr12 16619931 16620148 -104637382 + B4A SINE B4 27 266 -26 2 711 342 0 0 0 chr12 16620183 16620221 -104637309 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 711 673 248 0 28 chr12 16620239 16620384 -104637146 + B1F1 SINE Alu 9 149 0 2 711 412 227 143 18 chr12 16620905 16621017 -104636513 - Lx9 LINE L1 -410 7234 7109 2 711 431 287 0 0 chr12 16621532 16621640 -104635890 + ID_B1 SINE B4 114 221 -3 2 711 257 216 49 0 chr12 16621647 16621749 -104635781 + GA-rich Low_complexity Low_complexity 2 108 0 2 711 1205 188 0 5 chr12 16621793 16622002 -104635528 - B3 SINE B2 -8 208 1 2 711 243 0 0 0 chr12 16622153 16622180 -104635350 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 711 214 382 87 35 chr12 16622221 16622568 -104634962 + L2c LINE L2 3022 3386 -1 2 711 236 306 60 68 chr12 16622571 16622704 -104634826 - MIRc SINE MIR -107 161 30 2 711 204 185 0 0 chr12 16623444 16623498 -104634032 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 711 236 348 58 22 chr12 16623639 16623777 -104633753 + MLT1H1 LTR MaLR 111 253 -342 2 711 275 292 109 33 chr12 16623906 16623998 -104633532 + MLT1H1 LTR MaLR 362 460 -95 2 711 1596 149 0 20 chr12 16624362 16624615 -104632915 + ORR1A2 LTR MaLR 1 248 -79 2 711 1026 68 0 0 chr12 16624582 16624714 -104632816 + B1_Mus1 SINE Alu 17 148 0 2 711 493 0 0 0 chr12 16624750 16624805 -104632725 + ORR1A2 LTR MaLR 272 326 0 2 711 358 258 175 0 chr12 16624896 16624993 -104632537 - PB1D9 SINE Alu -5 115 2 2 711 300 306 23 12 chr12 16625046 16625132 -104632398 - RSINE1 SINE B4 -22 143 57 2 711 1010 210 50 43 chr12 16625139 16625418 -104632112 - Lx8 LINE L1 -458 7015 6735 2 711 576 0 0 0 chr12 16625645 16625709 -104631821 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 711 532 184 37 55 chr12 16626205 16626314 -104631216 - PB1D10 SINE Alu -6 111 5 2 711 288 338 0 0 chr12 16626364 16626444 -104631086 - ID4_ SINE ID -3 80 1 2 711 239 229 21 0 chr12 16626516 16626564 -104630966 - ID4 SINE ID -33 50 2 2 711 443 316 144 44 chr12 16626619 16626986 -104630544 + MER74A LTR ERVL 153 556 -2 2 711 2940 46 3 0 chr12 16629038 16629383 -104628147 + ORR1A0 LTR MaLR 1 346 0 2 711 37125 42 0 3 chr12 16629539 16635945 -104621585 - L1Md_T LINE L1 0 6585 100 2 711 483 48 0 0 chr12 16636437 16636499 -104621031 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 711 235 178 0 64 chr12 16636522 16636600 -104620930 - Lx7 LINE L1 -1868 5828 5756 2 711 814 138 0 0 chr12 16636627 16636743 -104620787 + B1_Mur2 SINE Alu 24 139 -10 2 711 240 0 0 118 chr12 16636743 16636794 -104620736 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 711 240 219 137 0 chr12 16636801 16636874 -104620656 - L1M1 LINE L1 -510 5793 5711 2 711 201 324 81 0 chr12 16638366 16638477 -104619053 + MIRb SINE MIR 88 207 -61 2 711 423 233 83 112 chr12 16638901 16639070 -104618460 + RSINE1 SINE B4 2 165 0 2 711 246 265 0 0 chr12 16639081 16639198 -104618332 + (CA)n Simple_repeat Simple_repeat 2 118 0 2 711 341 263 0 11 chr12 16639209 16639390 -104618140 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 711 246 279 0 0 chr12 16639401 16639548 -104617982 + (CA)n Simple_repeat Simple_repeat 2 148 0 2 711 300 265 0 0 chr12 16639593 16639740 -104617790 + (CA)n Simple_repeat Simple_repeat 2 148 0 2 711 315 266 197 45 chr12 16640031 16640275 -104617255 + L2a LINE L2 3061 3341 -85 2 711 326 296 0 0 chr12 16640423 16640504 -104617026 + ID4_ SINE ID 1 81 -2 2 711 353 0 70 0 chr12 16640777 16640834 -104616696 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 711 641 209 0 0 chr12 16641239 16641349 -104616181 - ID_B1 SINE B4 -13 211 102 2 711 266 291 171 50 chr12 16643180 16643419 -104614111 + L3 LINE CR1 3350 3617 -872 2 711 389 254 3 2 chr12 16643561 16643640 -104613890 + RSINE1 SINE B4 2 81 -211 2 711 1431 50 0 0 chr12 16643672 16643932 -104613598 + (CA)n Simple_repeat Simple_repeat 1 260 0 2 711 539 211 63 18 chr12 16644017 16644128 -104613402 + B3 SINE B2 96 211 -5 2 711 380 298 210 0 chr12 16644171 16644295 -104613235 - RSINE1 SINE B4 -14 151 2 2 711 828 102 0 0 chr12 16644356 16644503 -104613027 + (TC)n Simple_repeat Simple_repeat 1 147 0 2 711 369 0 0 0 chr12 16644503 16644543 -104612987 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 711 1065 107 0 0 chr12 16645303 16645622 -104611908 + (TG)n Simple_repeat Simple_repeat 1 319 0 2 711 614 261 7 42 chr12 16645644 16645788 -104611742 - RSINE1 SINE B4 -25 140 2 2 712 1200 194 14 0 chr12 16646428 16646650 -104610880 + URR1B DNA MER1_type 1 225 0 2 712 433 257 36 27 chr12 16647366 16647478 -104610052 - PB1D10 SINE Alu 0 117 5 2 712 643 185 296 17 chr12 16647627 16647803 -104609727 + URR1B DNA MER1_type 1 225 0 2 712 1818 199 89 23 chr12 16648250 16648641 -104608889 - MTD LTR MaLR -2 417 1 2 712 1121 150 72 0 chr12 16648755 16648948 -104608582 + URR1B DNA MER1_type 17 223 -2 2 712 31 26 0 0 chr12 16649658 16649696 -104607834 + AT_rich Low_complexity Low_complexity 1 38 0 2 712 620 300 35 12 chr12 16649714 16649728 -104607802 - ID_B1 SINE B4 -47 177 165 2 712 207 0 0 0 chr12 16649728 16649751 -104607779 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 712 620 300 35 12 chr12 16649751 16649908 -104607622 - ID_B1 SINE B4 -60 164 2 2 712 1003 204 18 41 chr12 16649936 16650156 -104607374 - B3 SINE B2 0 216 2 2 712 207 292 0 65 chr12 16650277 16650354 -104607176 - MIRb SINE MIR -103 165 94 2 712 1048 262 39 25 chr12 16651745 16652031 -104605499 + B4 SINE B4 1 290 -2 2 712 180 97 0 0 chr12 16652040 16652071 -104605459 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 2 712 663 105 28 14 chr12 16652092 16652237 -104605293 + (CAGA)n Simple_repeat Simple_repeat 4 150 0 2 712 1535 148 96 3 chr12 16654313 16654639 -104602891 - MTC LTR MaLR 0 419 1 2 712 296 372 23 90 chr12 16654640 16654773 -104602757 + B4A SINE B4 39 162 -130 2 712 482 0 0 17 chr12 16654862 16654921 -104602609 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 712 2132 281 70 13 chr12 16655554 16656240 -104601290 + Lx8 LINE L1 6369 7093 -380 2 712 2511 153 42 22 chr12 16657072 16657520 -104600010 + RLTR20B3 LTR ERVK 1 457 -120 2 712 351 299 28 67 chr12 16657701 16657853 -104599677 - B4 SINE B4 -119 173 28 2 712 696 287 120 16 chr12 16658419 16658727 -104598803 - MER57F LTR ERV1 -13 423 84 2 712 281 237 39 13 chr12 16658732 16658809 -104598721 - MTEb LTR MaLR 0 379 301 2 712 2297 83 3 117 chr12 16659280 16659591 -104597939 - ORR1A2 LTR MaLR 0 327 58 2 712 875 87 167 0 chr12 16659591 16659717 -104597813 - B1_Mus2 SINE Alu 0 147 1 2 712 2297 83 3 117 chr12 16659717 16659774 -104597756 - ORR1A2 LTR MaLR -270 57 1 2 712 251 284 128 80 chr12 16659911 16660137 -104597393 - MIRb SINE MIR -31 237 1 2 712 522 0 0 0 chr12 16660991 16661049 -104596481 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 712 999 232 0 0 chr12 16662851 16663032 -104594498 - B3A SINE B2 -16 182 2 2 712 201 277 145 0 chr12 16663716 16663799 -104593731 + MIRc SINE MIR 47 141 -127 2 712 311 293 88 16 chr12 16664486 16664611 -104592919 - MER5A DNA MER1_type -40 149 16 2 712 377 248 146 8 chr12 16665436 16665566 -104591964 - B1F SINE Alu 0 149 2 2 712 1043 254 5 0 chr12 16665804 16666009 -104591521 + ID_B1 SINE B4 2 207 -17 2 712 240 336 36 51 chr12 16665890 16666028 -104591502 - YREP_Mm Unknown Unknown -1504 308 173 3 712 200 290 27 55 chr12 16666960 16667033 -104590497 + MIRb SINE MIR 198 268 0 3 712 216 0 0 0 chr12 16667041 16667065 -104590465 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 712 307 41 41 0 chr12 16667065 16667113 -104590417 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 712 708 280 137 72 chr12 16667151 16667413 -104590117 - B4 SINE B4 -12 280 2 3 712 2878 98 12 5 chr12 16668158 16668560 -104588970 - RLTR44A LTR ERVK 0 405 1 3 712 450 0 0 0 chr12 16668777 16668827 -104588703 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 712 1269 253 138 24 chr12 16669103 16669472 -104588058 + MTD LTR MaLR 5 415 -4 3 712 1373 138 32 9 chr12 16669648 16669868 -104587662 - URR1B DNA MER1_type 0 225 1 3 712 359 346 98 3 chr12 16670622 16670837 -104586693 + MIRb SINE MIR 9 250 -18 3 712 946 170 5 104 chr12 16671699 16672046 -104585484 + RMER17B LTR ERVK 1 269 -689 3 712 1997 235 40 78 chr12 16672018 16672876 -104584654 + RMER17B LTR ERVK 173 904 -4 3 712 710 270 37 0 chr12 16672898 16673061 -104584469 - B3 SINE B2 -47 169 1 3 712 279 191 62 16 chr12 16673394 16673458 -104584072 - ID SINE ID -155 69 3 3 712 1093 240 30 147 chr12 16674958 16675209 -104582321 + MTEa LTR MaLR 1 221 -158 3 712 640 56 352 0 chr12 16675209 16675317 -104582213 + B1_Mm SINE Alu 1 146 -1 3 712 1093 240 30 147 chr12 16675317 16675494 -104582036 + MTEa LTR MaLR 222 379 0 3 712 417 352 27 22 chr12 16675926 16676109 -104581421 + LTR79 LTR ERVL 19 202 -325 3 712 940 219 133 56 chr12 16676113 16676490 -104581040 + RMER10A LTR ERVL 37 442 0 3 712 1108 122 202 0 chr12 16677032 16677220 -104580310 - URR1A DNA MER1_type 0 226 1 3 712 405 0 0 0 chr12 16678167 16678212 -104579318 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 712 337 300 19 114 chr12 16678221 16678379 -104579151 - B3 SINE B2 -72 144 2 3 712 210 174 0 0 chr12 16678406 16678452 -104579078 + T-rich Low_complexity Low_complexity 1 46 0 3 712 289 351 29 77 chr12 16679831 16680038 -104577492 + RMER30 DNA MER1_type 2 198 -4 3 712 742 300 96 33 chr12 16681048 16681351 -104576179 + MER2 DNA MER2_type 19 340 -5 3 712 748 302 64 16 chr12 16681634 16681883 -104575647 + B4A SINE B4 3 263 -29 3 712 510 17 0 0 chr12 16681936 16681995 -104575535 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 712 900 132 154 55 chr12 16682137 16682338 -104575192 + URR1B DNA MER1_type 5 225 0 3 712 263 343 127 80 chr12 16682535 16682874 -104574656 + ORR1E LTR MaLR 1 355 -4 3 712 24 0 0 0 chr12 16683346 16683370 -104574160 + AT_rich Low_complexity Low_complexity 1 24 0 3 712 497 294 134 0 chr12 16683399 16683518 -104574012 + RSINE1 SINE B4 15 149 -16 3 712 477 0 0 0 chr12 16683520 16683573 -104573957 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 712 210 111 0 53 chr12 16685012 16685034 -104572496 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 712 402 108 0 0 chr12 16685034 16685099 -104572431 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 3 712 210 111 0 53 chr12 16685099 16685114 -104572416 + (TG)n Simple_repeat Simple_repeat 1 14 0 3 712 289 294 56 45 chr12 16685496 16685585 -104571945 - B1F1 SINE Alu -48 101 12 3 712 291 204 0 0 chr12 16685574 16685623 -104571907 - ID SINE ID -143 81 33 3 712 627 98 0 0 chr12 16685693 16685785 -104571745 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 712 2308 139 26 24 chr12 16685975 16686352 -104571178 + ORR1C1 LTR MaLR 1 378 0 3 712 1540 247 25 14 chr12 16686544 16686909 -104570621 + MTEa LTR MaLR 1 369 -10 3 712 182 333 95 0 chr12 16687492 16687576 -104569954 - MIRm SINE MIR -119 157 66 3 712 349 310 88 14 chr12 16687585 16687732 -104569798 + L1ME3A LINE L1 5986 6143 -30 3 712 269 282 217 56 chr12 16687764 16687944 -104569586 - B3 SINE B2 -6 210 2 3 712 830 239 159 32 chr12 16688535 16688786 -104568744 + B4 SINE B4 1 283 -9 3 712 361 322 185 39 chr12 16689190 16689546 -104567984 + MLT1H LTR MaLR 72 479 -70 3 712 184 231 0 71 chr12 16690111 16690167 -104567363 - L2 LINE L2 -2568 851 800 3 712 1314 54 0 0 chr12 16690239 16690406 -104567124 + (TC)n Simple_repeat Simple_repeat 1 167 0 3 712 294 29 0 0 chr12 16690406 16690440 -104567090 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 712 679 258 94 20 chr12 16690686 16690888 -104566642 - ID_B1 SINE B4 -7 217 1 3 712 246 250 141 26 chr12 16690906 16690984 -104566546 - MIRc SINE MIR -107 161 75 3 712 425 97 0 14 chr12 16691629 16691702 -104565828 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 712 962 262 75 11 chr12 16691713 16691979 -104565551 - B4 SINE B4 -8 284 2 3 712 322 258 18 12 chr12 16691984 16692082 -104565448 - ID4_ SINE ID -54 98 2 3 712 432 245 37 9 chr12 16692091 16692198 -104565332 - PB1D10 SINE Alu -7 110 1 3 712 198 0 0 0 chr12 16692513 16692535 -104564995 + (CACCC)n Simple_repeat Simple_repeat 3 24 0 3 712 303 113 0 0 chr12 16692782 16692835 -104564695 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 3 712 195 42 0 0 chr12 16693351 16693375 -104564155 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 712 635 222 0 0 chr12 16695876 16695984 -104561546 - PB1D10 SINE Alu -5 112 5 3 712 5881 42 0 0 chr12 16696264 16696955 -104560575 - L1Md_A LINE L1 0 6582 5892 3 712 405 0 0 0 chr12 16697203 16697248 -104560282 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 712 1121 246 39 50 chr12 16697278 16697560 -104559970 - B4A SINE B4 -13 279 1 3 712 218 32 32 0 chr12 16698517 16698548 -104558982 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 712 264 250 110 58 chr12 16699171 16699275 -104558255 + MIRb SINE MIR 158 262 -6 3 712 252 143 0 0 chr12 16699808 16699850 -104557680 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 712 1250 236 54 7 chr12 16699932 16700209 -104557321 - B4 SINE B4 -2 290 1 3 712 189 0 0 0 chr12 16700365 16700386 -104557144 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 712 1205 243 54 7 chr12 16700892 16701170 -104556360 - B4A SINE B4 0 292 2 3 712 270 81 0 0 chr12 16701544 16701581 -104555949 + (TTG)n Simple_repeat Simple_repeat 2 38 0 3 712 795 154 13 87 chr12 16701581 16701730 -104555800 - B1_Mur2 SINE Alu -11 138 1 3 712 1240 244 33 73 chr12 16701730 16701891 -104555639 + MTE2a LTR MaLR 47 212 -207 3 712 2564 43 0 0 chr12 16701891 16702194 -104555336 + L1Md_T LINE L1 6280 6582 0 3 712 1240 225 30 78 chr12 16702194 16702404 -104555126 + MTE2a LTR MaLR 169 374 -5 3 712 4007 45 0 2 chr12 16702405 16702891 -104554639 + L1Md_F2 LINE L1 6098 6582 0 3 712 781 239 114 0 chr12 16704334 16704501 -104553029 - ID_B1 SINE B4 -38 186 1 3 712 267 164 0 0 chr12 16704511 16704572 -104552958 + T-rich Low_complexity Low_complexity 1 61 0 3 712 198 0 0 0 chr12 16704582 16704604 -104552926 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 3 712 1210 36 0 0 chr12 16704604 16704743 -104552787 - B1_Mus1 SINE Alu -9 139 1 3 712 187 293 11 109 chr12 16706905 16706997 -104550533 - MIRm SINE MIR -15 261 179 3 712 1418 187 80 74 chr12 16707110 16707273 -104550257 + ORR1D1 LTR MaLR 7 171 -203 3 712 441 84 0 0 chr12 16707273 16707344 -104550186 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 3 712 1418 187 80 74 chr12 16707344 16707532 -104549998 + ORR1D1 LTR MaLR 172 359 -15 3 712 483 335 58 0 chr12 16708155 16708310 -104549220 + RSINE1 SINE B4 2 165 0 3 712 213 265 0 0 chr12 16708723 16708772 -104548758 - MIRm SINE MIR -16 260 212 3 712 180 392 77 31 chr12 16708842 16709037 -104548493 - L2c LINE L2 -236 3151 2948 3 712 1105 204 37 0 chr12 16709576 16709792 -104547738 - URR1B DNA MER1_type 0 225 2 3 712 1398 232 97 11 chr12 16710005 16710354 -104547176 + MTEb LTR MaLR 1 379 0 3 712 768 305 97 12 chr12 16710652 16710911 -104546619 + B4 SINE B4 8 288 -4 3 712 477 0 0 0 chr12 16710942 16710995 -104546535 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 712 1416 142 32 0 chr12 16711474 16711693 -104545837 + URR1A DNA MER1_type 1 226 0 3 712 198 349 175 9 chr12 16711971 16712182 -104545348 + MIR SINE MIR 11 256 -6 3 712 1024 66 22 0 chr12 16712184 16712321 -104545209 + B2_Mm2 SINE B2 1 140 -55 3 712 806 248 71 43 chr12 16713467 16713678 -104543852 + ID_B1 SINE B4 7 223 -1 3 712 317 339 35 9 chr12 16716726 16716842 -104540688 + PB1D7 SINE Alu 1 119 -1 3 712 995 121 28 24 chr12 16717744 16717931 -104539599 + B3 SINE B2 1 189 -6 3 712 2238 156 61 25 chr12 16719306 16719700 -104537830 + MTD LTR MaLR 3 410 -9 3 712 543 177 103 34 chr12 16719998 16720144 -104537386 - RMER30 DNA MER1_type -42 160 5 3 712 1135 72 150 6 chr12 16720253 16720420 -104537110 - B2_Mm2 SINE B2 -4 191 1 3 712 588 194 22 82 chr12 16720434 16720569 -104536961 - RSINE1 SINE B4 -36 129 3 3 712 236 358 37 0 chr12 16722002 16722083 -104535447 - MIR3 SINE MIR -46 162 79 3 712 265 240 92 13 chr12 16722299 16722375 -104535155 + MIRb SINE MIR 46 127 -141 3 712 362 282 12 0 chr12 16724180 16724265 -104533265 - BC1_Mm scRNA scRNA -63 89 4 3 712 187 182 45 0 chr12 16724890 16724934 -104532596 + MER5B DNA MER1_type 8 53 -125 3 712 908 189 0 7 chr12 16724940 16725084 -104532446 + B1_Mur1 SINE Alu 1 143 -6 3 712 192 244 22 0 chr12 16726743 16726788 -104530742 + L2 LINE L2 2340 2385 -1034 3 712 297 128 0 0 chr12 16727910 16727957 -104529573 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 712 220 376 6 22 chr12 16727966 16728148 -104529382 + (CATA)n Simple_repeat Simple_repeat 2 180 0 4 712 973 145 21 0 chr12 16728527 16728672 -104528858 + B1_Mus1 SINE Alu 1 148 0 4 712 339 378 55 5 chr12 16728873 16729075 -104528455 + MIR SINE MIR 17 228 -34 4 712 225 247 162 20 chr12 16729111 16729210 -104528320 - MIRc SINE MIR -61 207 95 4 712 195 240 80 0 chr12 16729441 16729491 -104528039 - L3 LINE CR1 -3505 984 931 4 712 192 239 43 0 chr12 16729622 16729668 -104527862 + MIRc SINE MIR 85 132 -136 4 712 363 323 160 12 chr12 16731155 16731324 -104526206 - MER20 DNA MER1_type -6 213 20 4 712 3056 30 68 0 chr12 16731985 16732352 -104525178 + MTA_Mm LTR MaLR 5 396 0 4 712 623 234 28 47 chr12 16732360 16732558 -104524972 + L1MA4 LINE L1 5709 5936 -364 4 712 248 202 212 50 chr12 16735122 16735221 -104522309 + MIRc SINE MIR 41 155 -113 4 712 340 279 63 92 chr12 16735211 16735385 -104522145 - MIRb SINE MIR -6 262 94 4 712 330 304 19 130 chr12 16736210 16736418 -104521112 - B3A SINE B2 -10 185 1 4 712 309 300 57 49 chr12 16736683 16736928 -104520602 + L1MC5 LINE L1 7556 7802 -159 4 712 207 100 0 0 chr12 16738279 16738309 -104519221 + (CACCC)n Simple_repeat Simple_repeat 4 33 0 4 712 186 43 0 0 chr12 16738389 16738412 -104519118 + (CGAG)n Simple_repeat Simple_repeat 3 25 0 4 712 567 0 0 0 chr12 16738440 16738503 -104519027 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 712 245 298 65 28 chr12 16739227 16739334 -104518196 + MIRc SINE MIR 12 122 -146 4 712 22 0 0 0 chr12 16739627 16739649 -104517881 + AT_rich Low_complexity Low_complexity 1 22 0 4 712 480 323 181 13 chr12 16739669 16739907 -104517623 - B4 SINE B4 -13 279 2 4 712 215 163 0 0 chr12 16739946 16739989 -104517541 + L3 LINE CR1 2569 2611 -1878 4 712 196 343 37 84 chr12 16741160 16741351 -104516179 + L2b LINE L2 3024 3205 -170 4 712 268 238 24 36 chr12 16741734 16741817 -104515713 - MamRep1161 DNA TcMar -874 83 2 4 712 944 124 277 0 chr12 16743473 16743650 -104513880 + URR1A DNA MER1_type 1 226 0 4 712 254 220 34 0 chr12 16745202 16745261 -104512269 + ID2 SINE ID 1 61 -22 4 712 468 0 0 0 chr12 16746946 16746998 -104510532 + (CAG)n Simple_repeat Simple_repeat 2 53 0 4 712 552 15 0 0 chr12 16747308 16747373 -104510157 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 712 1149 174 37 18 chr12 16747457 16747674 -104509856 + URR1B DNA MER1_type 5 225 0 4 712 249 276 97 8 chr12 16747821 16747945 -104509585 - L1MB8 LINE L1 -41 6137 6003 4 712 380 275 60 102 chr12 16748038 16748204 -104509326 + MT2B LTR ERVL 105 263 -338 4 712 874 159 7 0 chr12 16748101 16748239 -104509291 + B1_Mur3 SINE Alu 11 149 0 4 712 267 276 16 10 chr12 16748302 16748401 -104509129 - BC1_Mm scRNA scRNA -49 103 2 4 712 463 16 15 15 chr12 16748892 16748957 -104508573 + (TTCTC)n Simple_repeat Simple_repeat 5 69 0 4 712 258 32 0 0 chr12 16748957 16748988 -104508542 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 4 712 384 138 0 0 chr12 16748992 16749057 -104508473 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 712 684 237 0 0 chr12 16749057 16749192 -104508338 - ID_B1 SINE B4 -10 214 80 4 712 462 18 0 0 chr12 16749428 16749483 -104508047 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 712 1517 73 5 0 chr12 16749590 16749782 -104507748 - B2_Mm1t SINE B2 0 193 1 4 712 613 269 12 31 chr12 16751404 16751565 -104505965 + RSINE1 SINE B4 3 160 -5 4 712 360 43 0 0 chr12 16751773 16751819 -104505711 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 712 246 128 0 0 chr12 16751944 16751983 -104505547 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 712 264 213 115 0 chr12 16752012 16752073 -104505457 + PB1D9 SINE Alu 3 70 -50 4 712 553 271 34 0 chr12 16752098 16752216 -104505314 + B3 SINE B2 89 210 -6 4 712 540 231 31 93 chr12 16752673 16752802 -104504728 + RSINE1 SINE B4 45 165 0 4 712 382 345 160 26 chr12 16753362 16753630 -104503900 + HAL1 LINE L1 864 1167 -1340 4 712 243 188 0 0 chr12 16753900 16753948 -104503582 + T-rich Low_complexity Low_complexity 2 49 0 4 712 957 143 0 0 chr12 16753961 16754101 -104503429 - B1_Mur4 SINE Alu -9 141 2 4 712 297 279 169 34 chr12 16754160 16754538 -104502992 + HAL1 LINE L1 1174 1602 -905 4 712 882 0 0 0 chr12 16754622 16754720 -104502810 + (TTAGGG)n Simple_repeat Simple_repeat 3 100 0 4 712 4110 69 0 40 chr12 16755325 16755872 -104501658 + L1_Mus2 LINE L1 6041 6565 -1 4 712 566 267 16 8 chr12 16755941 16756062 -104501468 + RSINE1 SINE B4 3 124 -41 4 712 539 53 0 13 chr12 16756062 16756138 -104501392 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 712 747 284 0 31 chr12 16756307 16756503 -104501027 - RMER30 DNA MER1_type -11 191 2 4 712 820 302 98 0 chr12 16756846 16757101 -104500429 - B4A SINE B4 -6 286 7 4 712 249 33 0 0 chr12 16757911 16757941 -104499589 + (GCCTG)n Simple_repeat Simple_repeat 3 32 0 4 712 743 255 0 69 chr12 16758937 16759110 -104498420 - RSINE1 SINE B4 0 165 5 4 712 180 0 0 0 chr12 16760446 16760466 -104497064 + (A)n Simple_repeat Simple_repeat 1 20 0 4 712 387 273 112 28 chr12 16760720 16760863 -104496667 - RSINE1 SINE B4 -10 155 1 4 712 300 243 171 53 chr12 16761573 16761591 -104495939 + HAL1-3A_ME LINE L1 2041 2057 -801 4 712 230 267 133 0 chr12 16761591 16761651 -104495879 + ID4_ SINE ID 2 69 -14 4 712 300 243 171 53 chr12 16761651 16761784 -104495746 + HAL1-3A_ME LINE L1 2058 2210 -648 4 712 854 286 15 0 chr12 16761797 16761993 -104495537 + B3 SINE B2 1 199 -17 4 712 1266 58 87 12 chr12 16762432 16762605 -104494925 - B2_Mm2 SINE B2 -9 186 1 4 712 198 287 11 54 chr12 16763209 16763301 -104494229 + L2b LINE L2 3050 3137 -238 4 712 599 295 20 7 chr12 16764164 16764314 -104493216 + RSINE1 SINE B4 3 154 -11 4 712 522 75 0 0 chr12 16764321 16764401 -104493129 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 712 290 193 81 85 chr12 16764432 16764542 -104492988 - B1_Mur1 SINE Alu -5 144 17 4 712 874 139 6 6 chr12 16764785 16764951 -104492579 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 4 712 297 0 0 0 chr12 16764967 16765000 -104492530 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 712 805 285 68 94 chr12 16765040 16765324 -104492206 + Tigger9b DNA MER2_type 148 423 -201 4 712 279 0 0 0 chr12 16765324 16765355 -104492175 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 712 805 285 68 94 chr12 16765355 16765538 -104491992 + Tigger9b DNA MER2_type 424 603 -21 4 712 747 277 68 11 chr12 16765618 16765808 -104491722 + ID_B1 SINE B4 24 224 0 4 712 197 395 103 18 chr12 16766220 16766385 -104491145 + MIRb SINE MIR 54 232 -36 4 712 1198 191 0 9 chr12 16766411 16766623 -104490907 - B3 SINE B2 -6 210 1 4 712 412 237 32 0 chr12 16767963 16768056 -104489474 - ID_B1 SINE B4 -2 222 127 4 712 282 315 18 9 chr12 16768083 16768192 -104489338 + L1ME4a LINE L1 5960 6069 -55 4 712 306 0 0 0 chr12 16768266 16768300 -104489230 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 712 908 149 7 0 chr12 16768343 16768484 -104489046 - B1_Mur4 SINE Alu -7 143 2 4 712 299 247 105 12 chr12 16768621 16768707 -104488823 - MER5A1 DNA MER1_type -12 154 61 4 712 468 51 0 0 chr12 16768721 16768780 -104488750 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 712 367 277 87 77 chr12 16768848 16769055 -104488475 - B4A SINE B4 -18 274 66 4 712 315 71 0 0 chr12 16769164 16769206 -104488324 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 712 776 178 0 22 chr12 16769216 16769400 -104488130 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 712 369 198 19 9 chr12 16769400 16769507 -104488023 + (TG)n Simple_repeat Simple_repeat 1 108 0 4 712 299 138 0 33 chr12 16769510 16769570 -104487960 + (CATA)n Simple_repeat Simple_repeat 3 60 0 4 712 605 253 156 0 chr12 16769573 16769727 -104487803 - B3 SINE B2 -37 179 2 4 712 477 288 25 0 chr12 16769899 16770017 -104487513 - B1F SINE Alu -10 139 19 4 712 306 373 15 22 chr12 16770017 16770036 -104487494 - ID_B1 SINE B4 -10 214 79 4 712 477 183 0 0 chr12 16770067 16770138 -104487392 - ID4_ SINE ID -9 74 4 4 712 403 199 29 2 chr12 16772349 16772473 -104485057 + B4A SINE B4 2 174 -118 4 712 511 314 58 19 chr12 16772722 16772878 -104484652 + RSINE1 SINE B4 2 163 -2 4 712 2126 214 53 2 chr12 16772893 16773343 -104484187 - Lx6 LINE L1 -10 7450 6978 4 712 396 0 0 0 chr12 16773344 16773388 -104484142 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 712 515 263 30 0 chr12 16773786 16773919 -104483611 - B1F SINE Alu -4 145 9 4 712 591 85 0 0 chr12 16773931 16774013 -104483517 + (CTG)n Simple_repeat Simple_repeat 1 82 0 4 712 561 289 0 15 chr12 16774058 16774195 -104483335 - B1F1 SINE Alu -10 139 5 4 712 1077 290 22 14 chr12 16774624 16774900 -104482630 + B4A SINE B4 1 278 -14 4 712 372 104 0 0 chr12 16774901 16774968 -104482562 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 712 353 235 211 20 chr12 16776041 16776193 -104481337 + MLT1C LTR MaLR 5 185 -282 4 712 34 24 0 0 chr12 16776193 16776234 -104481296 + AT_rich Low_complexity Low_complexity 1 41 0 4 712 199 0 0 61 chr12 16776235 16776268 -104481262 + (TA)n Simple_repeat Simple_repeat 1 31 0 4 712 459 0 0 0 chr12 16776302 16776353 -104481177 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 712 631 255 94 0 chr12 16776354 16776503 -104481027 - B3 SINE B2 -53 163 1 5 713 459 0 0 0 chr12 16778715 16778766 -104478764 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 713 207 0 0 0 chr12 16779672 16779695 -104477835 + (A)n Simple_repeat Simple_repeat 1 23 0 5 713 188 307 8 0 chr12 16779710 16779837 -104477693 + (TGGA)n Simple_repeat Simple_repeat 1 128 0 5 713 229 284 30 0 chr12 16779858 16779925 -104477605 + (TGGA)n Simple_repeat Simple_repeat 3 71 0 5 713 225 374 48 43 chr12 16779926 16780133 -104477397 - L2a LINE L2 -9 3417 3210 5 713 1153 89 0 0 chr12 16780599 16780745 -104476785 + B1_Mus1 SINE Alu 3 148 0 5 713 547 181 0 0 chr12 16780777 16780871 -104476659 + B1_Mur1 SINE Alu 43 136 -13 5 713 2387 106 22 0 chr12 16781029 16781349 -104476181 - ORR1A2 LTR MaLR 0 327 1 5 713 971 258 20 0 chr12 16781561 16781759 -104475771 + ID_B1 SINE B4 1 202 -22 5 713 225 284 60 36 chr12 16782055 16782139 -104475391 - L2a LINE L2 -182 3193 3108 5 713 775 182 15 0 chr12 16782587 16782719 -104474811 - B1_Mur4 SINE Alu -16 134 1 5 713 600 242 15 61 chr12 16782724 16782895 -104474635 - B3 SINE B2 -26 172 5 5 713 667 143 9 0 chr12 16782942 16783047 -104474483 + B1_Mus1 SINE Alu 15 120 -28 5 713 407 213 68 77 chr12 16782943 16783060 -104474470 + MT2B LTR ERVL 179 294 -307 5 713 1819 150 95 9 chr12 16783174 16783491 -104474039 + ORR1B2 LTR MaLR 9 352 -15 5 713 198 0 0 0 chr12 16783584 16783606 -104473924 + (TTTTTG)n Simple_repeat Simple_repeat 1 22 0 5 713 228 244 158 0 chr12 16783670 16783752 -104473778 + L2a LINE L2 3328 3422 -4 5 713 479 265 64 145 chr12 16783842 16784076 -104473454 + B3 SINE B2 1 215 -1 5 713 918 215 66 25 chr12 16784442 16784638 -104472892 - B3 SINE B2 -3 213 10 5 713 200 136 50 17 chr12 16784698 16784758 -104472772 + (TATAA)n Simple_repeat Simple_repeat 5 66 0 5 713 932 93 57 0 chr12 16785662 16785802 -104471728 - URR1A DNA MER1_type -1 225 78 5 713 499 262 159 0 chr12 16786144 16786270 -104471260 + RSINE1 SINE B4 2 147 -18 5 713 180 111 0 0 chr12 16786283 16786310 -104471220 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 713 339 260 0 14 chr12 16786411 16786485 -104471045 - ID4_ SINE ID -3 80 8 5 713 496 246 32 16 chr12 16786512 16786636 -104470894 - B1F1 SINE Alu -8 141 16 5 713 246 302 42 97 chr12 16786513 16786678 -104470852 + YREP_Mm Unknown Unknown 186 341 -1471 5 713 207 0 0 0 chr12 16786690 16786713 -104470817 + (A)n Simple_repeat Simple_repeat 1 23 0 5 713 973 88 73 0 chr12 16786713 16786849 -104470681 + B1_Mus2 SINE Alu 1 146 -1 5 713 1311 77 33 5 chr12 16786870 16787054 -104470476 + B2_Mm2 SINE B2 1 189 -6 5 713 732 255 30 143 chr12 16787362 16787691 -104469839 + B4A SINE B4 1 292 0 5 713 657 239 7 21 chr12 16787742 16787887 -104469643 + B1F2 SINE Alu 7 149 0 5 713 367 300 151 17 chr12 16788000 16788265 -104469265 - MLT1A0 LTR MaLR -32 342 31 5 713 735 221 19 19 chr12 16788299 16788460 -104469070 - RSINE1 SINE B4 -1 164 4 5 713 266 339 8 39 chr12 16788474 16788603 -104468927 + YREP_Mm Unknown Unknown 170 294 -1518 5 713 784 259 6 0 chr12 16788487 16788657 -104468873 - ID_B1 SINE B4 -5 219 49 5 713 255 251 75 25 chr12 16788652 16788751 -104468779 + B4 SINE B4 85 282 -10 5 713 971 144 0 0 chr12 16789561 16789707 -104467823 - B1_Mur4 SINE Alu 0 150 5 5 713 351 232 304 0 chr12 16790306 16790418 -104467112 + MTE2b LTR MaLR 3 148 -231 5 713 718 219 162 15 chr12 16790425 16790629 -104466901 - ORR1D2 LTR MaLR -12 358 125 5 713 1023 152 98 14 chr12 16790638 16790852 -104466678 + RMER4B LTR ERVK 17 248 -337 5 713 679 266 88 55 chr12 16791145 16791339 -104466191 + ID_B1 SINE B4 34 223 -1 5 713 2405 122 104 0 chr12 16791455 16791831 -104465699 - MTC LTR MaLR -6 415 1 5 713 305 242 229 57 chr12 16791951 16792091 -104465439 - RSINE1 SINE B4 0 165 2 5 713 523 209 9 43 chr12 16792091 16792203 -104465327 - B4A SINE B4 -62 230 123 5 713 185 314 56 28 chr12 16792728 16792800 -104464730 - MIR3 SINE MIR -10 198 125 5 713 1223 68 0 0 chr12 16793123 16793270 -104464260 + B1_Mus1 SINE Alu 2 148 0 5 713 1500 242 53 0 chr12 16793759 16794119 -104463411 - MTE2b LTR MaLR 0 379 1 5 713 1171 71 0 37 chr12 16794232 16794393 -104463137 + B2_Mm2 SINE B2 4 158 -37 5 713 642 307 0 31 chr12 16794411 16794606 -104462924 + B3A SINE B2 5 193 -5 5 713 1062 115 0 0 chr12 16794611 16794776 -104462754 + (GGA)n Simple_repeat Simple_repeat 2 166 0 5 713 796 162 3 1 chr12 16795598 16795737 -104461793 - B1_Mur1 SINE Alu 0 149 8 5 713 475 188 218 0 chr12 16796131 16796264 -104461266 + RSINE1 SINE B4 4 165 0 5 713 495 0 0 0 chr12 16796268 16796323 -104461207 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 713 369 0 0 0 chr12 16796323 16796363 -104461167 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 713 288 0 0 0 chr12 16797017 16797049 -104460481 + (A)n Simple_repeat Simple_repeat 1 32 0 5 713 749 219 47 6 chr12 16797607 16797777 -104459753 - ID_B1 SINE B4 0 224 48 5 713 542 283 84 21 chr12 16797837 16798075 -104459455 + L1MD LINE L1 4871 5123 -1023 5 713 291 249 0 28 chr12 16798090 16798272 -104459258 + (CATA)n Simple_repeat Simple_repeat 4 180 0 5 713 292 228 0 24 chr12 16798227 16798353 -104459177 + (CATATA)n Simple_repeat Simple_repeat 6 128 0 5 713 419 287 0 4 chr12 16798356 16798552 -104458978 + (CA)n Simple_repeat Simple_repeat 1 195 0 5 713 423 0 0 0 chr12 16798552 16798599 -104458931 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 713 419 236 0 11 chr12 16798599 16798704 -104458826 + (CA)n Simple_repeat Simple_repeat 2 104 0 5 713 297 277 265 26 chr12 16798704 16798898 -104458632 + L1MD LINE L1 5128 5367 -779 5 713 779 222 66 6 chr12 16798914 16799095 -104458435 + B3A SINE B2 1 192 -6 5 713 338 354 34 0 chr12 16799099 16799274 -104458256 + L1M5 LINE L1 5426 5606 -558 5 713 1192 195 5 5 chr12 16799277 16799488 -104458042 + B3 SINE B2 1 211 -5 5 713 1993 143 38 6 chr12 16799550 16799866 -104457664 - MTC LTR MaLR 0 421 96 5 713 219 36 0 0 chr12 16799931 16799959 -104457571 + (C)n Simple_repeat Simple_repeat 1 28 0 5 713 192 179 0 0 chr12 16800171 16800210 -104457320 + G-rich Low_complexity Low_complexity 3 41 0 5 713 285 187 154 39 chr12 16800233 16800311 -104457219 + RSINE1 SINE B4 44 130 -35 5 713 684 201 2 2 chr12 16800417 16800543 -104456987 + B1_Mur1 SINE Alu 1 126 -21 5 713 861 232 82 37 chr12 16800681 16800950 -104456580 + B4A SINE B4 2 282 -10 5 713 370 298 25 34 chr12 16801032 16801150 -104456380 - PB1D7 SINE Alu -1 119 3 5 713 1165 75 0 0 chr12 16801605 16801751 -104455779 - B1_Mus1 SINE Alu -1 147 2 5 713 626 215 307 0 chr12 16801777 16801940 -104455590 - B3 SINE B2 -1 215 3 5 713 310 253 25 0 chr12 16802205 16802284 -104455246 + L1MB7 LINE L1 6012 6092 -92 5 713 22 35 0 0 chr12 16802333 16802362 -104455168 + AT_rich Low_complexity Low_complexity 1 29 0 5 713 749 199 103 0 chr12 16802379 16802515 -104455015 + RSINE1 SINE B4 3 152 -13 5 713 678 212 95 0 chr12 16802861 16802998 -104454532 + B3A SINE B2 2 151 -47 5 713 392 242 22 11 chr12 16803130 16803222 -104454308 - L2b LINE L2 -3 3372 3280 5 713 1150 137 101 10 chr12 16803225 16803432 -104454098 + URR1A DNA MER1_type 1 226 0 5 713 494 135 0 0 chr12 16803710 16803784 -104453746 - B4 SINE B4 -217 75 2 5 713 236 235 197 98 chr12 16803827 16803959 -104453571 - MER5A DNA MER1_type -3 186 42 5 713 486 274 17 52 chr12 16804289 16804462 -104453068 + B3A SINE B2 8 174 -24 5 713 22 35 0 0 chr12 16804475 16804504 -104453026 + AT_rich Low_complexity Low_complexity 1 29 0 5 713 762 200 7 0 chr12 16805101 16805241 -104452289 + B1_Mur2 SINE Alu 3 143 -6 5 713 921 168 0 0 chr12 16805394 16805531 -104451999 - B1_Mus2 SINE Alu -9 138 2 5 713 333 0 0 0 chr12 16806951 16806988 -104450542 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 713 297 0 0 0 chr12 16806994 16807027 -104450503 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 713 23 0 0 0 chr12 16807575 16807598 -104449932 + GC_rich Low_complexity Low_complexity 1 23 0 5 713 554 28 0 14 chr12 16808228 16808301 -104449229 + (TCC)n Simple_repeat Simple_repeat 1 72 0 5 713 452 272 8 8 chr12 16808388 16808514 -104449016 + RSINE1 SINE B4 5 130 -35 5 713 578 287 99 30 chr12 16808844 16809045 -104448485 + ID_B1 SINE B4 10 224 0 5 713 362 181 14 27 chr12 16809544 16809618 -104447912 - HAL1-3A_ME LINE L1 -810 2048 1976 5 713 366 235 0 0 chr12 16809641 16809790 -104447740 + (TG)n Simple_repeat Simple_repeat 2 150 0 5 713 253 309 24 12 chr12 16810012 16810094 -104447436 + ID2 SINE ID 1 83 0 5 713 33 25 0 0 chr12 16810717 16810757 -104446773 + AT_rich Low_complexity Low_complexity 1 40 0 5 713 788 269 125 40 chr12 16811704 16812057 -104445473 - MLT1B LTR MaLR -7 383 1 5 713 422 262 314 18 chr12 16812141 16812312 -104445218 + ID_B1 SINE B4 1 222 -2 5 713 330 26 0 0 chr12 16812421 16812460 -104445070 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 713 314 255 26 162 chr12 16812838 16812955 -104444575 + B1F SINE Alu 43 143 -6 5 713 342 249 20 15 chr12 16812989 16813316 -104444214 + GA-rich Low_complexity Low_complexity 1 328 0 5 713 2696 111 60 2 chr12 16813593 16813991 -104443539 - MTC LTR MaLR 0 421 1 6 713 257 256 11 99 chr12 16814155 16814246 -104443284 - MER5A DNA MER1_type -74 115 33 5 713 705 287 32 42 chr12 16814321 16814510 -104443020 - ID_B1 SINE B4 -19 205 19 6 713 309 290 105 35 chr12 16814525 16814668 -104442862 - MLT1A0 LTR MaLR -203 162 10 6 713 336 336 44 15 chr12 16815191 16815327 -104442203 + MIRb SINE MIR 42 181 -87 6 713 303 333 0 17 chr12 16815355 16815471 -104442059 - PB1D10 SINE Alu -1 116 3 6 713 253 329 38 0 chr12 16815716 16815795 -104441735 - L2b LINE L2 -9 3366 3285 6 713 331 269 164 23 chr12 16815972 16816143 -104441387 + B3A SINE B2 3 197 -1 6 713 757 227 0 0 chr12 16816149 16816277 -104441253 + B3 SINE B2 1 128 -88 6 713 2208 132 108 0 chr12 16816316 16816696 -104440834 + RMER6D LTR ERVK 1 421 -299 6 713 207 324 0 29 chr12 16816716 16816786 -104440744 - MIR SINE MIR -116 146 79 6 713 883 185 0 102 chr12 16816842 16817047 -104440483 - B3 SINE B2 -6 210 27 6 713 619 39 427 0 chr12 16817180 16817283 -104440247 + B1_Mus1 SINE Alu 1 147 -1 6 713 285 305 9 71 chr12 16817323 16817436 -104440094 - PB1D9 SINE Alu -1 119 14 6 713 526 214 6 70 chr12 16818306 16818462 -104439068 - RSINE1 SINE B4 -17 148 3 6 713 348 24 0 0 chr12 16818800 16818841 -104438689 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 713 529 260 93 27 chr12 16819384 16819534 -104437996 - B3 SINE B2 -41 175 16 6 713 595 250 23 0 chr12 16820657 16820789 -104436741 + B1F SINE Alu 1 135 -14 6 713 388 250 79 29 chr12 16821117 16821257 -104436273 + B1F1 SINE Alu 1 147 -2 6 713 879 245 48 5 chr12 16821607 16821816 -104435714 + ID_B1 SINE B4 1 218 -6 6 713 508 231 0 36 chr12 16821824 16821936 -104435594 + RSINE1 SINE B4 4 111 -54 6 713 199 229 0 0 chr12 16823798 16823833 -104433697 - MIR SINE MIR -142 120 86 6 713 830 192 7 7 chr12 16824429 16824576 -104432954 + B1_Mus2 SINE Alu 1 147 0 6 713 318 26 0 0 chr12 16824577 16824616 -104432914 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 6 713 731 190 199 11 chr12 16824713 16824845 -104432685 + B3 SINE B2 1 152 -64 6 713 387 0 0 0 chr12 16824845 16824888 -104432642 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 713 731 190 199 11 chr12 16824888 16824931 -104432599 + B3 SINE B2 153 209 -7 6 713 716 42 0 50 chr12 16825010 16825110 -104432420 - B1_Mm SINE Alu 0 147 53 6 713 25 51 0 0 chr12 16825110 16825149 -104432381 + AT_rich Low_complexity Low_complexity 1 39 0 6 713 246 295 38 25 chr12 16825162 16825242 -104432288 + ID4 SINE ID 2 82 -1 6 713 795 193 31 12 chr12 16826177 16826340 -104431190 - RMER10B LTR ERVL -48 350 185 6 713 538 189 0 0 chr12 16826834 16826929 -104430601 + PB1D9 SINE Alu 24 118 -2 6 713 429 297 111 15 chr12 16828132 16828397 -104429133 + MER44D DNA MER2_type 460 684 -21 6 713 368 319 45 77 chr12 16828659 16828815 -104428715 + B4 SINE B4 73 223 -69 6 713 719 185 59 0 chr12 16828682 16828817 -104428713 + B1_Mur1 SINE Alu 7 149 0 6 713 347 295 26 0 chr12 16830134 16830212 -104427318 + MER58B DNA MER1_type 206 285 -56 6 713 637 265 58 31 chr12 16830244 16830435 -104427095 - B3A SINE B2 -2 196 1 6 713 446 251 77 57 chr12 16831623 16831817 -104425713 - B3A SINE B2 0 198 1 6 713 289 253 51 0 chr12 16831838 16831917 -104425613 + PB1D10 SINE Alu 23 105 -12 6 713 340 276 130 36 chr12 16833183 16833375 -104424155 + MIRm SINE MIR 54 263 -13 6 713 2832 33 0 0 chr12 16833617 16833946 -104423584 + L1_Mus1 LINE L1 6238 6566 -1 6 713 1214 176 18 26 chr12 16834045 16834272 -104423258 - URR1B DNA MER1_type 0 225 1 6 713 1826 202 95 64 chr12 16834433 16834919 -104422611 - RLTR20B3 LTR ERVK -56 521 21 6 713 264 339 104 52 chr12 16835283 16835476 -104422054 - LTR41 LTR ERVL -545 223 21 6 713 600 153 186 0 chr12 16836119 16836243 -104421287 - B1_Mus2 SINE Alu 0 147 1 6 713 215 216 0 0 chr12 16836348 16836385 -104421145 + (CACG)n Simple_repeat Simple_repeat 4 40 0 6 713 995 335 4 22 chr12 16836418 16836693 -104420837 + B4 SINE B4 17 286 -6 6 713 346 202 18 71 chr12 16836727 16836837 -104420693 + ORR1E LTR MaLR 33 136 -223 6 713 251 279 51 0 chr12 16836937 16837016 -104420514 + ERVL-E-int LTR ERVL 2679 2761 -2906 6 713 2759 85 55 80 chr12 16837046 16837533 -104419997 - IAPLTR2_Mm LTR ERVK 0 475 1 6 713 278 276 115 89 chr12 16837881 16838116 -104419414 - LTR41 LTR ERVL -507 261 21 6 713 234 0 0 0 chr12 16838724 16838750 -104418780 + (T)n Simple_repeat Simple_repeat 1 26 0 6 713 371 247 13 13 chr12 16839385 16839463 -104418067 - RSINE1 SINE B4 -87 78 1 6 713 180 0 0 0 chr12 16839476 16839496 -104418034 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 713 404 255 90 45 chr12 16839506 16839617 -104417913 - PB1D10 SINE Alu -1 116 1 6 713 215 290 48 0 chr12 16839761 16839823 -104417707 + RSINE1 SINE B4 39 103 -62 6 713 279 0 0 0 chr12 16839858 16839889 -104417641 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 713 864 115 0 0 chr12 16839892 16840014 -104417516 - B2_Mm2 SINE B2 -72 123 2 6 713 209 288 0 26 chr12 16840074 16840188 -104417342 + (TAAA)n Simple_repeat Simple_repeat 3 113 0 6 713 371 214 169 0 chr12 16840299 16840388 -104417142 + ID_B1 SINE B4 52 155 -69 6 713 437 265 46 111 chr12 16840389 16840695 -104416835 + B4 SINE B4 2 287 -5 6 713 247 338 0 0 chr12 16841501 16841581 -104415949 + ID4_ SINE ID 4 83 0 6 713 269 247 9 131 chr12 16842154 16842261 -104415269 - URR1B DNA MER1_type -55 170 77 6 713 375 289 0 0 chr12 16842409 16842485 -104415045 + ID4 SINE ID 8 83 0 6 713 308 165 114 36 chr12 16842618 16842725 -104414805 + Lx2B LINE L1 6892 7000 0 6 713 352 249 18 12 chr12 16843692 16843859 -104413671 + (TA)n Simple_repeat Simple_repeat 1 168 0 6 713 547 295 50 31 chr12 16844040 16844201 -104413329 - B4A SINE B4 -127 165 2 6 713 638 284 52 0 chr12 16844460 16844594 -104412936 + RSINE1 SINE B4 4 144 -21 6 713 468 0 0 0 chr12 16844598 16844650 -104412880 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 713 313 237 127 11 chr12 16844837 16844976 -104412554 - MTE2a LTR MaLR 0 379 191 6 713 1008 62 67 18 chr12 16845024 16845189 -104412341 - Lx LINE L1 -7 6647 6475 6 713 774 200 15 0 chr12 16845189 16845324 -104412206 + B1_Mur2 SINE Alu 13 149 0 6 713 312 265 53 105 chr12 16845191 16845343 -104412187 + B4A SINE B4 102 245 -47 6 713 2340 129 28 18 chr12 16845359 16845747 -104411783 - RMER6A LTR ERVK 0 756 365 6 713 2265 143 41 18 chr12 16846162 16846554 -104410976 + RMER1B Other Other 650 1050 -16 6 713 1714 211 47 6 chr12 16846554 16846892 -104410638 + MTD LTR MaLR 68 419 0 6 713 929 218 0 0 chr12 16847064 16847229 -104410301 + Lx6 LINE L1 7039 7203 -257 6 713 596 277 76 5 chr12 16847378 16847563 -104409967 + B3A SINE B2 1 198 0 6 713 664 304 59 0 chr12 16847707 16847911 -104409619 + ID_B1 SINE B4 6 221 -3 6 713 775 135 239 0 chr12 16848463 16848626 -104408904 + URR1A DNA MER1_type 1 202 -24 6 713 976 295 13 75 chr12 16848831 16849067 -104408463 + B4A SINE B4 2 230 -62 6 713 781 198 141 92 chr12 16849067 16849180 -104408350 + B3 SINE B2 1 121 -95 6 713 611 67 11 0 chr12 16849180 16849269 -104408261 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 713 960 134 0 0 chr12 16849271 16849413 -104408117 - B1_Mus1 SINE Alu -6 142 1 6 713 781 198 141 92 chr12 16849413 16849502 -104408028 + B3 SINE B2 122 216 0 6 713 976 295 13 75 chr12 16849502 16849573 -104407957 + B4A SINE B4 231 290 -2 6 713 351 186 129 0 chr12 16849720 16849790 -104407740 - ID4 SINE ID -3 80 2 6 713 446 226 0 0 chr12 16849800 16849884 -104407646 - PB1D10 SINE Alu -5 112 29 6 713 448 297 21 28 chr12 16849867 16850009 -104407521 + MLT1C LTR MaLR 323 463 -4 6 713 189 261 27 55 chr12 16850295 16850368 -104407162 + L2b LINE L2 3074 3144 -231 6 713 830 223 5 96 chr12 16850395 16850613 -104406917 - MTEa LTR MaLR 0 379 182 6 713 289 304 97 84 chr12 16850647 16851038 -104406492 + RMER10A LTR ERVL 29 424 -18 6 713 873 28 0 0 chr12 16851025 16851131 -104406399 - B1_Mm SINE Alu -17 130 25 6 713 1132 202 36 5 chr12 16851132 16851351 -104406179 - B4 SINE B4 -65 227 2 6 713 26 0 0 0 chr12 16852030 16852056 -104405474 + GC_rich Low_complexity Low_complexity 1 26 0 6 713 186 174 20 61 chr12 16852145 16852194 -104405336 + L2b LINE L2 2948 2994 -381 6 713 941 186 84 109 chr12 16852358 16852561 -104404969 - MTE2b LTR MaLR 0 379 185 6 713 261 0 0 0 chr12 16852561 16852590 -104404940 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 6 713 797 144 244 6 chr12 16852591 16852759 -104404771 - B3 SINE B2 -8 208 1 6 713 941 186 84 109 chr12 16852759 16852837 -104404693 - MTE2b LTR MaLR -195 184 103 6 713 1561 164 134 3 chr12 16852835 16853134 -104404396 + MTC LTR MaLR 76 413 -8 6 713 23 53 0 34 chr12 16853143 16853168 -104404362 + AT_rich Low_complexity Low_complexity 1 25 0 6 713 1445 77 0 0 chr12 16853168 16853349 -104404181 + B2_Mm2 SINE B2 4 184 -11 6 713 23 53 0 34 chr12 16853349 16853382 -104404148 + AT_rich Low_complexity Low_complexity 1 32 0 6 713 254 274 12 0 chr12 16854003 16854087 -104403443 + (CCA)n Simple_repeat Simple_repeat 2 86 0 6 713 361 328 41 26 chr12 16854089 16854283 -104403247 - LTR33 LTR ERVL -58 457 261 7 713 307 280 28 46 chr12 16854582 16854701 -104402829 - MamGypLTR2b LTR Gypsy -29 893 674 7 713 562 318 89 5 chr12 16855439 16855641 -104401889 + HERV16-int LTR ERVL 2505 2723 -2273 7 713 608 213 29 22 chr12 16855653 16855792 -104401738 - B1F SINE Alu 0 149 10 7 713 468 250 18 90 chr12 16855792 16855820 -104401710 - ID_B1 SINE B4 -2 222 68 7 713 282 321 59 15 chr12 16856108 16856244 -104401286 + HERV16-int LTR ERVL 2973 3114 -2553 7 713 1254 266 84 0 chr12 16856432 16856778 -104400752 + MTEa LTR MaLR 1 375 -4 7 713 351 0 0 0 chr12 16857067 16857106 -104400424 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 713 239 318 228 40 chr12 16857358 16857735 -104399795 + LTR16B1 LTR ERVL 18 465 -15 7 713 704 340 136 33 chr12 16857742 16858162 -104399368 + MER115 DNA Tip100 163 625 -68 7 713 309 335 122 11 chr12 16858192 16858373 -104399157 + Arthur1B DNA Tip100 265 465 -760 7 713 1151 48 14 0 chr12 16858413 16858558 -104398972 + B1_Mus2 SINE Alu 1 147 0 7 713 264 91 0 0 chr12 16858558 16858602 -104398928 + (A)n Simple_repeat Simple_repeat 1 44 0 7 713 226 253 52 26 chr12 16858698 16858775 -104398755 + ID4_ SINE ID 1 79 -4 7 713 216 204 41 0 chr12 16858801 16858850 -104398680 + PB1D10 SINE Alu 67 117 0 7 713 908 222 77 0 chr12 16858875 16859069 -104398461 + ID_B1 SINE B4 8 216 -8 7 713 324 291 47 84 chr12 16859097 16859288 -104398242 + Arthur1B DNA Tip100 825 1008 -217 7 713 780 236 12 37 chr12 16859264 16859427 -104398103 + B3 SINE B2 5 163 -53 7 713 315 0 0 0 chr12 16859432 16859467 -104398063 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 713 625 245 57 7 chr12 16859472 16859612 -104397918 + B1_Mur1 SINE Alu 1 147 -2 7 713 447 278 140 69 chr12 16859772 16860047 -104397483 - B4 SINE B4 -11 281 1 7 713 275 236 70 70 chr12 16860159 16860273 -104397257 + Arthur1B DNA Tip100 1132 1225 0 7 713 222 262 2 0 chr12 16860911 16860968 -104396562 + ID4_ SINE ID 26 83 0 7 713 874 247 5 20 chr12 16861104 16861302 -104396228 + B3A SINE B2 2 196 -2 7 713 978 228 39 19 chr12 16861308 16861514 -104396016 + B3 SINE B2 1 210 -6 7 713 441 336 93 23 chr12 16861723 16861939 -104395591 - MIR SINE MIR -26 236 6 7 713 782 276 46 18 chr12 16861998 16862216 -104395314 + ID_B1 SINE B4 1 224 0 7 713 1060 87 0 7 chr12 16862223 16862362 -104395168 + B1_Mm SINE Alu 2 139 -8 7 713 930 66 0 0 chr12 16862379 16862501 -104395029 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 7 713 183 212 0 0 chr12 16863176 16863209 -104394321 + MIR SINE MIR 123 155 -107 7 713 182 150 25 0 chr12 16863478 16863518 -104394012 + CT-rich Low_complexity Low_complexity 2 42 0 7 713 1244 182 5 19 chr12 16863522 16863735 -104393795 - B3 SINE B2 0 216 7 7 713 221 299 101 29 chr12 16864148 16864286 -104393244 + MIRb SINE MIR 61 208 -60 7 713 361 250 0 0 chr12 16864301 16864365 -104393165 + B1F2 SINE Alu 19 82 -67 7 713 684 258 168 52 chr12 16864355 16864492 -104393038 + MTD LTR MaLR 51 198 -181 7 713 249 33 0 0 chr12 16864492 16864522 -104393008 + (TGAG)n Simple_repeat Simple_repeat 4 33 0 7 713 722 166 15 36 chr12 16864522 16864670 -104392860 + MTD LTR MaLR 199 404 -15 7 713 1083 216 9 5 chr12 16864726 16864945 -104392585 + ID_B1 SINE B4 4 223 -1 7 713 477 0 0 0 chr12 16865431 16865484 -104392046 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 713 323 215 117 11 chr12 16866361 16866455 -104391075 + L1M4b LINE L1 2160 2263 -5071 7 713 468 307 179 12 chr12 16866506 16866823 -104390707 + MER57E1 LTR ERV1 1 370 -2 7 713 453 275 122 10 chr12 16867047 16867207 -104390323 + MIRb SINE MIR 23 213 -55 7 713 789 189 0 0 chr12 16867207 16867339 -104390191 + B1_Mur2 SINE Alu 2 133 -16 7 713 453 271 92 14 chr12 16867339 16867364 -104390166 + MIRb SINE MIR 208 232 -36 7 713 231 61 0 0 chr12 16867651 16867684 -104389846 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 713 258 32 0 0 chr12 16867684 16867714 -104389816 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 713 213 316 80 14 chr12 16867916 16868054 -104389476 - MIR SINE MIR -43 165 19 7 713 239 191 16 0 chr12 16868054 16868117 -104389413 + CT-rich Low_complexity Low_complexity 2 65 0 7 713 189 74 0 0 chr12 16868158 16868185 -104389345 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 713 230 333 0 0 chr12 16868253 16868310 -104389220 + B4A SINE B4 85 141 -151 7 713 583 276 0 0 chr12 16868323 16868446 -104389084 - RSINE1 SINE B4 -42 123 1 7 713 504 254 87 29 chr12 16868444 16868582 -104388948 - B1F SINE Alu -3 146 1 7 713 460 304 20 74 chr12 16868800 16868934 -104388596 + B3A SINE B2 53 179 -19 7 713 396 117 0 0 chr12 16868934 16869011 -104388519 + (CAGA)n Simple_repeat Simple_repeat 4 80 0 7 713 460 304 20 74 chr12 16869011 16869025 -104388505 + B3A SINE B2 180 193 -5 7 713 422 256 64 59 chr12 16869033 16869220 -104388310 + B3A SINE B2 5 192 -6 7 713 686 293 29 43 chr12 16869318 16869371 -104388159 + ID SINE ID 3 56 -168 7 713 1080 163 0 10 chr12 16869371 16869563 -104387967 + B2_Mm2 SINE B2 2 191 -4 7 713 686 293 29 43 chr12 16869563 16869716 -104387814 + ID_B1 SINE B4 57 206 -18 7 713 240 296 23 58 chr12 16869758 16869844 -104387686 - MLT1C LTR MaLR -55 353 271 7 713 697 282 53 35 chr12 16869898 16870126 -104387404 - MLT1C LTR MaLR -235 232 1 7 713 373 213 269 0 chr12 16870361 16870469 -104387061 + MLT1B LTR MaLR 11 147 -243 7 713 862 138 34 20 chr12 16870681 16870829 -104386701 + B1_Mur4 SINE Alu 1 150 0 7 713 246 390 8 33 chr12 16870869 16870991 -104386539 + B4A SINE B4 2 120 -172 7 713 215 236 0 14 chr12 16871170 16871243 -104386287 + (TA)n Simple_repeat Simple_repeat 2 73 0 7 713 415 389 22 73 chr12 16871501 16871773 -104385757 + L4 LINE RTE 1607 1864 -165 7 713 897 288 3 59 chr12 16872443 16872746 -104384784 - B4A SINE B4 -4 288 3 7 713 198 0 0 0 chr12 16874622 16874644 -104382886 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 713 614 235 89 70 chr12 16874678 16874948 -104382582 - B4A SINE B4 -16 276 2 7 713 242 209 42 56 chr12 16874961 16875032 -104382498 - L1MB5 LINE L1 -113 6061 5992 7 713 315 298 24 0 chr12 16875243 16875327 -104382203 + ID_B1 SINE B4 87 172 -52 7 713 1084 246 45 23 chr12 16876651 16876917 -104380613 + B4 SINE B4 2 273 -19 7 713 722 209 220 31 chr12 16878034 16878261 -104379269 + B4 SINE B4 5 274 -18 7 713 477 0 0 0 chr12 16878296 16878349 -104379181 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 713 641 271 0 0 chr12 16878368 16878497 -104379033 + RSINE1 SINE B4 4 132 -33 7 713 252 0 0 0 chr12 16878509 16878537 -104378993 + (ATAAG)n Simple_repeat Simple_repeat 5 32 0 7 713 504 0 0 0 chr12 16878717 16878773 -104378757 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 713 552 333 56 7 chr12 16879229 16879253 -104378277 + ID SINE ID 59 89 -135 7 713 422 258 96 59 chr12 16879253 16879372 -104378158 + B1_Mur3 SINE Alu 1 126 -23 7 713 191 88 29 0 chr12 16879372 16879406 -104378124 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 713 422 258 96 59 chr12 16879406 16879422 -104378108 + B1_Mur3 SINE Alu 127 141 -8 7 713 402 57 0 0 chr12 16879605 16879658 -104377872 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 713 414 100 0 0 chr12 16879659 16879719 -104377811 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 713 334 250 105 0 chr12 16879722 16879798 -104377732 - ID_B1 SINE B4 -17 207 124 7 713 685 275 12 53 chr12 16879807 16879976 -104377554 - RSINE1 SINE B4 -2 163 2 7 713 200 59 0 29 chr12 16880884 16880919 -104376611 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 713 411 38 0 0 chr12 16881263 16881316 -104376214 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 713 336 272 17 50 chr12 16881765 16881885 -104375645 - MIRb SINE MIR -15 253 138 7 713 672 266 0 14 chr12 16882437 16882582 -104374948 - ID_B1 SINE B4 0 224 82 7 713 558 231 153 6 chr12 16883069 16883226 -104374304 + RMER30 DNA MER1_type 3 182 -20 7 713 710 197 12 125 chr12 16883232 16883400 -104374130 - B1_Mur3 SINE Alu 0 149 1 7 713 595 230 147 7 chr12 16885063 16885199 -104372331 + ID_B1 SINE B4 1 155 -69 7 713 269 277 89 69 chr12 16885138 16885239 -104372291 + PB1D10 SINE Alu 14 116 -1 7 713 295 167 0 53 chr12 16885286 16885343 -104372187 + B1_Mm SINE Alu 72 125 -22 7 713 1254 35 0 0 chr12 16886007 16886151 -104371379 + B1_Mus1 SINE Alu 1 144 -4 7 713 253 306 139 35 chr12 16887448 16887563 -104369967 + L2c LINE L2 3031 3157 -230 7 713 431 180 8 146 chr12 16888092 16888222 -104369308 + MT2B LTR ERVL 153 264 -337 7 713 1074 65 0 7 chr12 16888118 16888257 -104369273 + B1_Mus1 SINE Alu 11 148 0 7 713 216 0 0 0 chr12 16888533 16888557 -104368973 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 7 713 797 272 80 73 chr12 16889272 16889558 -104367972 + B4A SINE B4 1 288 -4 7 713 392 200 143 87 chr12 16889739 16889865 -104367665 + ID_B1 SINE B4 91 223 -1 7 713 801 236 12 43 chr12 16890504 16890668 -104366862 + RSINE1 SINE B4 6 164 -1 7 713 1296 180 194 36 chr12 16890672 16891019 -104366511 - MTD LTR MaLR 0 421 68 7 713 866 164 0 54 chr12 16891019 16891167 -104366363 - B1_Mur2 SINE Alu -8 141 2 7 713 1152 192 143 169 chr12 16891167 16891251 -104366279 - MTD LTR MaLR -339 82 1 7 713 331 250 15 0 chr12 16892051 16892119 -104365411 + PB1D10 SINE Alu 7 75 -42 7 713 699 179 71 0 chr12 16892122 16892262 -104365268 + B1_Mur4 SINE Alu 1 150 0 7 713 293 344 8 83 chr12 16892262 16892323 -104365207 + ID_B1 SINE B4 157 210 -14 7 713 302 291 13 0 chr12 16893772 16893851 -104363679 - HAL1-3A_ME LINE L1 -803 2055 1976 7 713 180 0 0 0 chr12 16893871 16893891 -104363639 + (GA)n Simple_repeat Simple_repeat 1 20 0 7 713 966 214 16 11 chr12 16895098 16895287 -104362243 + B3 SINE B2 3 192 -24 8 713 1096 102 7 0 chr12 16895546 16895693 -104361837 + B1_Mus1 SINE Alu 1 148 0 8 713 194 328 49 32 chr12 16896573 16896696 -104360834 - MIRb SINE MIR -109 159 35 8 713 750 69 0 0 chr12 16896911 16897012 -104360518 + (TCCA)n Simple_repeat Simple_repeat 2 102 0 8 713 330 26 0 0 chr12 16897192 16897231 -104360299 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 713 311 328 82 78 chr12 16897838 16898106 -104359424 + L1M5 LINE L1 5100 5368 -778 8 713 189 0 0 0 chr12 16898247 16898268 -104359262 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 713 224 277 224 35 chr12 16898268 16898384 -104359146 - RSINE1 SINE B4 -25 140 3 8 713 1234 27 7 0 chr12 16898402 16898548 -104358982 - B1_Mus2 SINE Alu 0 147 1 8 713 23 0 0 0 chr12 16898691 16898714 -104358816 + AT_rich Low_complexity Low_complexity 1 23 0 8 713 805 163 42 7 chr12 16898715 16898857 -104358673 - B1_Mur4 SINE Alu -2 148 2 8 713 275 330 52 0 chr12 16898887 16898984 -104358546 - MIR SINE MIR -130 132 31 8 713 982 166 109 15 chr12 16899001 16899203 -104358327 + URR1A DNA MER1_type 5 225 -1 8 713 690 228 248 34 chr12 16899356 16899595 -104357935 - B4A SINE B4 -2 290 1 8 713 511 294 0 111 chr12 16899605 16899758 -104357772 - ID_B1 SINE B4 -5 219 84 8 713 626 200 54 48 chr12 16900368 16900515 -104357015 - B1_Mus1 SINE Alu 0 148 1 8 713 252 267 93 128 chr12 16900515 16900551 -104356979 - B4A SINE B4 -208 84 55 8 713 264 266 52 64 chr12 16900763 16900936 -104356594 - L1M5 LINE L1 -401 5723 5553 8 713 291 228 0 66 chr12 16901542 16901678 -104355852 + (CGGGG)n Simple_repeat Simple_repeat 1 127 0 8 713 27 62 0 0 chr12 16902024 16902072 -104355458 + GC_rich Low_complexity Low_complexity 1 48 0 8 713 1977 145 0 24 chr12 16903960 16904307 -104353223 + MTC LTR MaLR 1 406 -15 8 713 311 304 22 7 chr12 16904308 16904447 -104353083 - L1MB3 LINE L1 -28 6155 6015 8 713 183 204 68 0 chr12 16904774 16904818 -104352712 + MIRb SINE MIR 188 234 -34 8 713 601 207 32 82 chr12 16905178 16905336 -104352194 - RSINE1 SINE B4 0 165 16 8 713 696 251 6 24 chr12 16905654 16905821 -104351709 - RSINE1 SINE B4 0 165 2 8 713 225 280 26 13 chr12 16905887 16905963 -104351567 - ID4 SINE ID -2 81 5 8 713 297 330 71 35 chr12 16906245 16906358 -104351172 - RSINE1 SINE B4 -37 128 12 8 713 24 0 0 0 chr12 16906358 16906382 -104351148 + AT_rich Low_complexity Low_complexity 1 24 0 8 713 667 202 93 0 chr12 16906388 16906517 -104351013 + B1_Mus2 SINE Alu 1 141 -6 8 713 1175 68 0 0 chr12 16906522 16906669 -104350861 + B1_Mus2 SINE Alu 1 147 0 8 713 473 248 23 58 chr12 16906742 16906913 -104350617 - L1M5 LINE L1 -785 5659 5495 8 713 255 298 46 12 chr12 16907182 16907355 -104350175 - L1M5 LINE L1 -1026 5120 4942 8 713 251 157 20 0 chr12 16907394 16907445 -104350085 + (TTA)n Simple_repeat Simple_repeat 2 53 0 8 713 587 280 13 32 chr12 16907778 16907933 -104349597 + RSINE1 SINE B4 2 153 -12 8 714 391 241 61 10 chr12 16908627 16908753 -104348777 - PB1D10 SINE Alu -9 140 1 8 714 664 186 0 0 chr12 16909409 16909522 -104348008 + B1_Mm SINE Alu 29 141 -6 8 714 26 30 0 0 chr12 16909604 16909637 -104347893 + AT_rich Low_complexity Low_complexity 1 33 0 8 714 440 326 163 0 chr12 16909637 16909778 -104347752 - RSINE1 SINE B4 0 165 2 8 714 21 89 0 0 chr12 16909790 16909846 -104347684 + AT_rich Low_complexity Low_complexity 1 56 0 8 714 21 0 0 0 chr12 16909984 16910005 -104347525 + AT_rich Low_complexity Low_complexity 1 21 0 8 714 615 200 24 16 chr12 16910126 16910253 -104347277 - B1_Mur4 SINE Alu -1 149 22 8 714 231 167 0 0 chr12 16910349 16910391 -104347139 + T-rich Low_complexity Low_complexity 1 42 0 8 714 1193 48 0 13 chr12 16910394 16910543 -104346987 - B1_Mus2 SINE Alu 0 147 1 8 714 404 243 26 99 chr12 16910599 16910664 -104346866 - L1MB5 LINE L1 -219 5960 5907 8 714 1793 213 25 11 chr12 16910664 16911029 -104346501 - ORR1D2 LTR MaLR 0 370 1 8 714 496 222 297 27 chr12 16911029 16911334 -104346196 - L1MB5 LINE L1 -264 5910 5524 8 714 541 245 0 0 chr12 16911410 16911512 -104346018 - PB1 SINE Alu -20 107 6 8 714 245 253 26 167 chr12 16911411 16911525 -104346005 - MT2B2 LTR ERVL -333 251 154 8 714 445 228 69 10 chr12 16911757 16911859 -104345671 - PB1D10 SINE Alu 0 117 10 8 714 1542 62 0 0 chr12 16912065 16912257 -104345273 - B2_Mm1t SINE B2 -1 192 1 8 714 1166 75 0 0 chr12 16912493 16912640 -104344890 - B1_Mus2 SINE Alu 0 147 1 8 714 36 62 0 0 chr12 16912737 16912801 -104344729 + AT_rich Low_complexity Low_complexity 1 64 0 8 714 235 151 23 0 chr12 16912925 16912969 -104344561 - B1_Mus1 SINE Alu -84 66 18 8 714 21 0 0 0 chr12 16913082 16913103 -104344427 + AT_rich Low_complexity Low_complexity 1 21 0 8 714 437 84 0 14 chr12 16913182 16913254 -104344276 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 714 339 320 32 32 chr12 16913927 16914085 -104343445 - RSINE1 SINE B4 -6 159 2 8 714 625 261 47 61 chr12 16914169 16914381 -104343149 - ID_B1 SINE B4 -14 210 2 8 714 611 113 52 0 chr12 16914610 16914707 -104342823 + B1_Mus2 SINE Alu 45 146 -1 8 714 841 169 33 60 chr12 16914841 16915023 -104342507 - B2_Mm2 SINE B2 0 195 19 8 714 901 169 51 23 chr12 16915176 16915352 -104342178 + B2_Mm2 SINE B2 1 181 -14 8 714 803 214 72 31 chr12 16915379 16915572 -104341958 - B3 SINE B2 -14 202 2 8 714 916 264 48 5 chr12 16915761 16915970 -104341560 + ID_B1 SINE B4 7 224 0 8 714 373 172 16 0 chr12 16916009 16916073 -104341457 + B1_Mur1 SINE Alu 79 143 -6 8 714 571 203 72 43 chr12 16916708 16916847 -104340683 - RSINE1 SINE B4 0 165 23 8 714 1070 188 34 0 chr12 16916974 16917182 -104340348 - B3 SINE B2 0 216 2 8 714 216 0 0 0 chr12 16917252 16917276 -104340254 + (T)n Simple_repeat Simple_repeat 1 24 0 8 714 210 344 109 51 chr12 16917672 16917948 -104339582 + L2 LINE L2 635 926 -2493 8 714 189 0 0 0 chr12 16918682 16918703 -104338827 + (T)n Simple_repeat Simple_repeat 1 21 0 8 714 1140 7 0 0 chr12 16918703 16918839 -104338691 - B1_Mm SINE Alu 0 147 12 8 714 434 190 26 103 chr12 16918738 16918855 -104338675 - MT2B LTR ERVL -337 264 157 8 714 498 231 246 0 chr12 16919527 16919730 -104337800 - L1MB4 LINE L1 -52 6128 5876 8 714 769 55 266 0 chr12 16920471 16920580 -104336950 + B1_Mm SINE Alu 2 139 -8 8 714 1366 65 38 0 chr12 16920743 16920929 -104336601 - B2_Mm2 SINE B2 -2 193 1 8 714 265 321 12 12 chr12 16921038 16921123 -104336407 - LTR40b LTR ERVL -66 396 312 8 714 730 259 20 30 chr12 16921359 16921391 -104336139 - B3 SINE B2 -17 199 167 8 714 315 0 0 0 chr12 16921391 16921426 -104336104 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 714 781 209 3 11 chr12 16921426 16921592 -104335938 - B3A SINE B2 -50 166 3 8 714 535 179 90 69 chr12 16921650 16921794 -104335736 + B1_Mur1 SINE Alu 2 148 -1 8 714 202 150 0 24 chr12 16921799 16921840 -104335690 + A-rich Low_complexity Low_complexity 6 45 0 8 714 303 234 119 113 chr12 16921857 16922016 -104335514 + B2_Mm2 SINE B2 3 162 -33 8 714 342 314 121 44 chr12 16922092 16922365 -104335165 - L1M5 LINE L1 -3507 2639 2346 8 714 333 0 0 0 chr12 16922452 16922489 -104335041 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 714 1318 66 27 11 chr12 16922625 16922808 -104334722 - B2_Mm1a SINE B2 -5 188 3 8 714 419 294 19 10 chr12 16922890 16922993 -104334537 - PB1 SINE Alu -23 104 1 8 714 233 284 104 0 chr12 16923415 16923482 -104334048 - ID4_ SINE ID -5 78 5 8 714 446 262 116 23 chr12 16923497 16923508 -104334022 - ID_B1 SINE B4 -3 221 212 8 714 192 40 0 0 chr12 16923508 16923533 -104333997 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 8 714 446 262 116 23 chr12 16923533 16923650 -104333880 - ID_B1 SINE B4 -13 211 81 8 714 280 280 0 0 chr12 16923693 16923743 -104333787 - PB1D10 SINE Alu -66 51 2 8 714 183 340 144 10 chr12 16924241 16924345 -104333185 - L2a LINE L2 -299 3127 3010 8 714 326 257 234 26 chr12 16924450 16924762 -104332768 - L1MC4 LINE L1 -380 7662 7286 8 714 467 215 20 24 chr12 16924763 16924872 -104332658 - B3A SINE B2 -88 105 1 8 714 411 201 140 0 chr12 16924873 16925037 -104332493 - L1MC4 LINE L1 -744 7298 7112 8 714 356 206 0 14 chr12 16925214 16925288 -104332242 + Lx9 LINE L1 7121 7193 -451 8 714 545 270 130 47 chr12 16925310 16925648 -104331882 + Lx9 LINE L1 7259 7624 -20 8 714 21 57 0 0 chr12 16925744 16925779 -104331751 + AT_rich Low_complexity Low_complexity 1 35 0 8 714 330 258 121 0 chr12 16925831 16925995 -104331535 - L1MC4 LINE L1 -1175 6867 6666 8 714 513 81 14 0 chr12 16925999 16926073 -104331457 - URR1B DNA MER1_type 0 225 151 8 714 404 331 104 34 chr12 16926076 16926461 -104331069 - L2a LINE L2 -1299 2120 1709 8 714 322 288 75 66 chr12 16926588 16926800 -104330730 - RLTR15 LTR ERVK -96 263 50 8 714 442 282 141 56 chr12 16926878 16927065 -104330465 - L2a LINE L2 -2201 1218 1007 8 714 1139 146 13 52 chr12 16927065 16927296 -104330234 - URR1A DNA MER1_type 0 226 5 8 714 442 282 141 56 chr12 16927296 16927378 -104330152 - L2a LINE L2 -2413 1006 926 8 714 224 327 179 27 chr12 16927447 16927670 -104329860 - L2a LINE L2 -2713 706 450 8 714 248 269 15 15 chr12 16927835 16927903 -104329627 + ID4 SINE ID 5 72 -11 8 714 227 406 0 0 chr12 16927932 16928001 -104329529 - Charlie7 DNA MER1_type -2543 69 1 8 714 638 250 0 7 chr12 16928426 16928563 -104328967 + B1_Mur1 SINE Alu 1 136 -13 8 714 3135 60 2 2 chr12 16929396 16929795 -104327735 + L1_Mus1 LINE L1 6169 6567 0 8 714 1444 52 0 0 chr12 16929805 16929979 -104327551 + B2_Mm1a SINE B2 1 174 -19 8 714 25 31 0 0 chr12 16929988 16930020 -104327510 + AT_rich Low_complexity Low_complexity 1 32 0 8 714 487 290 65 0 chr12 16930078 16930185 -104327345 + RSINE1 SINE B4 20 133 -32 8 714 725 261 40 88 chr12 16930359 16930586 -104326944 + B3A SINE B2 1 216 0 9 714 821 211 83 6 chr12 16930828 16931009 -104326521 + B3A SINE B2 2 196 -2 9 714 734 267 37 0 chr12 16931240 16931431 -104326099 - B3A SINE B2 0 198 1 9 714 273 219 0 137 chr12 16931470 16931491 -104326039 - ID_B1 SINE B4 0 224 211 9 714 1081 90 0 20 chr12 16931491 16931639 -104325891 + B1_Mus1 SINE Alu 1 145 -3 9 714 201 74 0 0 chr12 16931639 16931666 -104325864 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 714 273 219 0 137 chr12 16931666 16931738 -104325792 - ID_B1 SINE B4 -14 210 144 9 714 410 268 0 41 chr12 16931738 16931780 -104325750 - B1_Mur1 SINE Alu -14 135 3 9 714 1569 114 311 0 chr12 16931804 16932103 -104325427 - ORR1B1 LTR MaLR 0 394 3 9 714 1145 62 14 0 chr12 16932206 16932351 -104325179 - B1_Mus1 SINE Alu 0 148 2 9 714 24 32 0 0 chr12 16932401 16932432 -104325098 + AT_rich Low_complexity Low_complexity 1 31 0 9 714 255 326 40 54 chr12 16932486 16932635 -104324895 + MIRb SINE MIR 99 245 -23 9 714 276 258 63 21 chr12 16932909 16933010 -104324520 + PB1D9 SINE Alu 1 110 -39 9 714 543 204 43 14 chr12 16933315 16933454 -104324076 - Lx9 LINE L1 -1695 5949 5807 9 714 1930 144 109 6 chr12 16933933 16934281 -104323249 - ORR1C2 LTR MaLR 0 384 1 9 714 710 176 20 81 chr12 16934353 16934501 -104323029 + B1_Mus1 SINE Alu 10 148 0 9 714 448 291 67 67 chr12 16934826 16935021 -104322509 + B3A SINE B2 1 195 -3 9 714 391 197 28 0 chr12 16935506 16935577 -104321953 - ID4_ SINE ID -10 73 1 9 714 224 273 10 83 chr12 16935899 16935995 -104321535 + MIR SINE MIR 53 141 -67 9 714 219 189 0 36 chr12 16936093 16936148 -104321382 + (CTATA)n Simple_repeat Simple_repeat 3 55 0 9 714 646 220 56 7 chr12 16936203 16936345 -104321185 + B1_Mur1 SINE Alu 1 149 0 9 714 253 287 42 11 chr12 16936381 16936476 -104321054 + (CATATA)n Simple_repeat Simple_repeat 5 102 0 9 714 1004 60 0 8 chr12 16936599 16936733 -104320797 - B1_Mm SINE Alu -1 146 14 9 714 23 0 0 0 chr12 16936739 16936762 -104320768 + AT_rich Low_complexity Low_complexity 1 23 0 9 714 232 105 17 34 chr12 16937186 16937245 -104320285 + T-rich Low_complexity Low_complexity 3 60 0 9 714 1193 55 7 0 chr12 16937247 16937393 -104320137 - B1_Mus2 SINE Alu 0 147 1 9 714 947 275 14 14 chr12 16937395 16937616 -104319914 - ID_B1 SINE B4 -1 223 3 9 714 602 179 18 18 chr12 16937629 16937743 -104319787 - PB1D9 SINE Alu -1 119 6 9 714 256 235 28 101 chr12 16937652 16937761 -104319769 - MT2B LTR ERVL -350 251 151 9 714 636 199 128 14 chr12 16938361 16938509 -104319021 + B3 SINE B2 1 165 -51 9 714 261 0 0 0 chr12 16938509 16938538 -104318992 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 714 845 176 129 11 chr12 16938550 16938728 -104318802 + B3 SINE B2 8 206 -10 9 714 21 57 0 0 chr12 16938728 16938763 -104318767 + AT_rich Low_complexity Low_complexity 1 35 0 9 714 1178 41 7 0 chr12 16939288 16939434 -104318096 + B1_Mus2 SINE Alu 1 147 0 9 714 397 296 122 46 chr12 16939468 16939599 -104317931 + RSINE1 SINE B4 4 144 -21 9 714 230 108 0 51 chr12 16939643 16939682 -104317848 + B3A SINE B2 9 45 -153 9 714 424 228 159 14 chr12 16940255 16940393 -104317137 + B3 SINE B2 1 158 -58 9 714 378 0 0 0 chr12 16940401 16940443 -104317087 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 714 30 27 0 0 chr12 16941180 16941217 -104316313 + AT_rich Low_complexity Low_complexity 1 37 0 9 714 189 94 0 0 chr12 16941330 16941362 -104316168 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 9 714 302 234 25 25 chr12 16943257 16943336 -104314194 - L1M4 LINE L1 -3631 2515 2437 9 714 803 159 7 35 chr12 16943768 16943911 -104313619 - B1_Mus1 SINE Alu -9 139 1 9 714 497 126 102 11 chr12 16944464 16944552 -104312978 + URR1A DNA MER1_type 46 141 -85 9 714 496 116 21 75 chr12 16944604 16944697 -104312833 - URR1B DNA MER1_type 0 225 138 9 714 585 0 0 0 chr12 16945240 16945305 -104312225 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 714 331 236 173 35 chr12 16945647 16945849 -104311681 - L2a LINE L2 -157 3269 3040 9 714 193 312 57 82 chr12 16946033 16946155 -104311375 - L2a LINE L2 -861 2558 2440 9 714 1152 88 0 0 chr12 16946257 16946417 -104311113 + B2_Mm2 SINE B2 2 161 -34 9 714 261 0 0 0 chr12 16946417 16946446 -104311084 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 9 714 1121 65 0 0 chr12 16948017 16948155 -104309375 + B1_Mus1 SINE Alu 1 138 -10 9 714 330 45 0 0 chr12 16948155 16948199 -104309331 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 714 700 240 108 15 chr12 16948215 16948410 -104309120 + B3 SINE B2 1 213 -3 9 714 320 304 29 0 chr12 16948567 16948669 -104308861 + PB1D9 SINE Alu 9 113 -7 9 714 414 287 20 53 chr12 16949839 16949990 -104307540 - RSINE1 SINE B4 -17 148 3 9 714 333 47 0 0 chr12 16950599 16950642 -104306888 + (CAA)n Simple_repeat Simple_repeat 1 43 0 9 714 415 189 274 18 chr12 16951009 16951122 -104306408 - B3 SINE B2 -74 142 1 9 714 1155 48 0 40 chr12 16951216 16951368 -104306162 + B1_Mm SINE Alu 2 147 0 9 714 288 130 0 0 chr12 16951368 16951414 -104306116 + (A)n Simple_repeat Simple_repeat 1 46 0 9 714 360 237 162 20 chr12 16951472 16951571 -104305959 + RSINE1 SINE B4 5 117 -48 9 714 240 35 0 0 chr12 16952058 16952087 -104305443 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 714 853 273 33 55 chr12 16952107 16952382 -104305148 - B4A SINE B4 -21 271 3 9 714 582 295 113 14 chr12 16952382 16952592 -104304938 - B4A SINE B4 -61 231 1 9 714 781 288 109 72 chr12 16952867 16953409 -104304121 - L1MC4a LINE L1 -1070 6812 6251 9 714 227 319 14 0 chr12 16953574 16953643 -104303887 + ID4_ SINE ID 21 90 -62 9 714 265 284 27 13 chr12 16953943 16954018 -104303512 - ID4_ SINE ID -6 77 2 9 714 544 230 136 39 chr12 16954295 16954553 -104302977 + B4A SINE B4 2 284 -8 9 714 284 98 0 24 chr12 16954743 16954785 -104302745 - U2 snRNA snRNA -147 41 1 9 714 1333 105 16 0 chr12 16955488 16955679 -104301851 + B2_Mm2 SINE B2 2 195 0 9 714 1161 139 91 34 chr12 16955773 16955982 -104301548 + URR1B DNA MER1_type 5 225 0 9 714 297 273 46 25 chr12 16956144 16956252 -104301278 - B1F1 SINE Alu 0 117 9 9 714 323 186 78 124 chr12 16956334 16956463 -104301067 - B3 SINE B2 -93 123 1 9 714 244 315 14 0 chr12 16956504 16956577 -104300953 - B2_Mm1a SINE B2 -119 74 1 9 714 556 241 0 9 chr12 16956857 16956970 -104300560 - PB1D9 SINE Alu 0 120 9 9 714 840 150 31 0 chr12 16957010 16957137 -104300393 - B1_Mur2 SINE Alu -17 132 2 9 714 716 148 17 0 chr12 16957902 16958017 -104299513 + B1_Mus2 SINE Alu 19 135 -12 9 714 320 318 49 90 chr12 16958017 16958145 -104299385 + MT2B2 LTR ERVL 183 415 -169 9 714 1236 101 34 0 chr12 16958447 16958626 -104298904 - B2_Mm2 SINE B2 -10 185 1 9 714 219 36 0 0 chr12 16958719 16958747 -104298783 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 9 714 831 117 20 52 chr12 16958752 16958905 -104298625 - B2_Mm2 SINE B2 -46 149 2 9 714 23 33 0 0 chr12 16959241 16959271 -104298259 + AT_rich Low_complexity Low_complexity 1 30 0 9 714 362 314 98 0 chr12 16960632 16960734 -104296796 - MER81 DNA AcHobo -1 113 2 9 714 1182 157 0 0 chr12 16960789 16960974 -104296556 + B3 SINE B2 2 186 -30 9 714 509 294 147 0 chr12 16961099 16961242 -104296288 + RSINE1 SINE B4 2 165 0 9 714 821 114 38 8 chr12 16961274 16961406 -104296124 + B1_Mur4 SINE Alu 3 138 -12 9 714 629 249 106 0 chr12 16961849 16962038 -104295492 - B3 SINE B2 -7 209 1 9 714 31 0 0 0 chr12 16962766 16962797 -104294733 + AT_rich Low_complexity Low_complexity 1 31 0 9 714 412 210 42 22 chr12 16962799 16962911 -104294619 - B4 SINE B4 -46 246 129 9 714 204 40 0 0 chr12 16962990 16963015 -104294515 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 9 714 230 204 47 75 chr12 16963019 16963125 -104294405 - PB1 SINE Alu 0 127 25 9 714 391 257 159 68 chr12 16963046 16963209 -104294321 - B4 SINE B4 -113 179 2 9 714 213 154 0 0 chr12 16963383 16963422 -104294108 + (TTG)n Simple_repeat Simple_repeat 1 39 0 9 714 482 231 38 20 chr12 16963422 16963537 -104293993 - B1_Mur1 SINE Alu -2 118 3 9 714 23 68 0 0 chr12 16963644 16963688 -104293842 + AT_rich Low_complexity Low_complexity 1 44 0 9 714 22 35 0 0 chr12 16964213 16964242 -104293288 + AT_rich Low_complexity Low_complexity 1 29 0 9 714 686 214 60 110 chr12 16965774 16965974 -104291556 + B3A SINE B2 6 195 -3 9 714 1166 137 10 31 chr12 16966360 16966556 -104290974 + B2_Mm1t SINE B2 1 192 -1 9 714 30 69 0 0 chr12 16966864 16966922 -104290608 + AT_rich Low_complexity Low_complexity 1 58 0 9 714 324 255 75 38 chr12 16967055 16967161 -104290369 + PB1D9 SINE Alu 5 114 -6 9 714 266 279 25 0 chr12 16967395 16967474 -104290056 - MER58B DNA MER1_type -4 337 257 9 714 397 250 12 0 chr12 16967523 16967603 -104289927 + ID4_ SINE ID 3 83 0 9 714 180 0 0 0 chr12 16967638 16967658 -104289872 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 714 502 189 0 0 chr12 16967685 16967775 -104289755 - PB1D9 SINE Alu 0 120 31 9 714 817 244 34 29 chr12 16967854 16968061 -104289469 + B3 SINE B2 4 211 -5 1 714 215 235 205 24 chr12 16969300 16969383 -104288147 + PB1D9 SINE Alu 23 120 0 1 714 812 144 50 0 chr12 16969675 16969814 -104287716 - B1_Mus1 SINE Alu 0 148 3 1 714 26 0 0 0 chr12 16969814 16969840 -104287690 + AT_rich Low_complexity Low_complexity 1 26 0 1 714 509 328 45 25 chr12 16970346 16970546 -104286984 + B4A SINE B4 75 278 -14 1 714 21 0 0 0 chr12 16970563 16970584 -104286946 + AT_rich Low_complexity Low_complexity 1 21 0 1 714 391 106 0 0 chr12 16970951 16971017 -104286513 + L1_Mus1 LINE L1 6501 6566 -1 1 714 1012 143 0 23 chr12 16971051 16971208 -104286322 + B2_Mm2 SINE B2 5 161 -34 1 714 300 53 0 0 chr12 16971208 16971246 -104286284 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1 714 1012 206 46 96 chr12 16971246 16971285 -104286245 + B2_Mm2 SINE B2 162 188 -10 1 714 419 289 101 7 chr12 16971364 16971502 -104286028 - MIR SINE MIR -97 165 21 1 714 435 19 0 0 chr12 16972512 16972564 -104284966 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 714 234 330 90 11 chr12 16972591 16972680 -104284850 + PB1D10 SINE Alu 1 96 -21 1 714 245 283 87 0 chr12 16972697 16972789 -104284741 - Charlie1 DNA MER1_type -2563 218 119 1 714 397 300 0 16 chr12 16972814 16972936 -104284594 - PB1D9 SINE Alu 0 120 1 1 714 204 40 0 0 chr12 16972950 16972975 -104284555 + (T)n Simple_repeat Simple_repeat 1 25 0 1 714 522 54 0 0 chr12 16973008 16973180 -104284350 - L1Md_F2 LINE L1 0 6582 6492 1 714 406 255 27 9 chr12 16973180 16973291 -104284239 - PB1D10 SINE Alu -1 116 4 1 714 296 315 22 0 chr12 16973557 16973646 -104283884 - B3 SINE B2 0 216 126 1 714 387 292 19 0 chr12 16973699 16973805 -104283725 - PB1D10 SINE Alu -8 109 2 1 714 262 327 37 28 chr12 16973846 16973953 -104283577 + ID4_ SINE ID 1 108 -44 1 714 350 367 0 16 chr12 16973987 16974109 -104283421 + PB1 SINE Alu 6 125 -2 1 714 584 201 84 18 chr12 16974197 16974374 -104283156 - B3 SINE B2 0 195 15 1 714 201 222 0 0 chr12 16974463 16974499 -104283031 + polypyrimidine Low_complexity Low_complexity 1 36 0 1 714 839 170 13 13 chr12 16974499 16974648 -104282882 - B1_Mur4 SINE Alu 0 150 2 1 714 652 231 94 31 chr12 16976426 16976618 -104280912 + B3 SINE B2 1 204 -12 1 714 505 254 43 21 chr12 16976633 16976774 -104280756 + ID_B1 SINE B4 79 222 -2 1 714 233 366 36 12 chr12 16976938 16977021 -104280509 - PB1D9 SINE Alu -31 89 5 1 714 407 232 72 0 chr12 16977036 16977153 -104280377 - PB1D9 SINE Alu -21 128 2 1 714 21 36 0 0 chr12 16977184 16977212 -104280318 + AT_rich Low_complexity Low_complexity 1 28 0 1 714 523 221 53 0 chr12 16977361 16977474 -104280056 + PB1D9 SINE Alu 1 119 -1 1 714 204 67 0 0 chr12 16977475 16977505 -104280025 + (A)n Simple_repeat Simple_repeat 1 30 0 1 714 212 211 17 50 chr12 16978806 16978866 -104278664 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 1 714 303 373 121 19 chr12 16978869 16978940 -104278590 - B4A SINE B4 0 292 1 1 714 546 313 39 40 chr12 16978940 16979134 -104278396 - B3A SINE B2 -3 192 1 1 714 740 329 80 0 chr12 16979134 16979348 -104278182 - B4A SINE B4 -60 232 1 1 714 240 237 0 48 chr12 16982238 16982300 -104275230 - MLT1-int LTR MaLR -831 540 482 1 714 624 72 129 43 chr12 16982574 16982690 -104274840 + B1_Mur2 SINE Alu 22 147 -2 1 714 493 274 97 6 chr12 16983308 16983473 -104274057 + B3A SINE B2 2 181 -17 1 714 236 309 0 0 chr12 16983951 16984006 -104273524 - ID4_ SINE ID -25 58 4 1 714 758 234 116 5 chr12 16984114 16984303 -104273227 + B3 SINE B2 1 210 -6 1 714 22 56 0 0 chr12 16985119 16985155 -104272375 + AT_rich Low_complexity Low_complexity 1 36 0 1 714 279 0 0 0 chr12 16985524 16985555 -104271975 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 714 1258 38 0 6 chr12 16985556 16985715 -104271815 - B2_Mm2 SINE B2 -37 158 1 1 714 756 170 49 7 chr12 16985998 16986140 -104271390 + B1_Mur2 SINE Alu 1 148 -1 1 714 470 330 40 17 chr12 16986299 16986475 -104271055 + B3A SINE B2 1 180 -18 1 714 207 265 118 24 chr12 16986641 16986726 -104270804 - MIR SINE MIR -142 120 28 1 714 228 163 0 0 chr12 16986729 16986772 -104270758 + GA-rich Low_complexity Low_complexity 1 43 0 1 714 746 181 67 8 chr12 16986832 16986966 -104270564 + B1_Mur1 SINE Alu 7 148 -1 1 714 198 0 0 0 chr12 16987126 16987148 -104270382 + (A)n Simple_repeat Simple_repeat 1 22 0 1 714 640 291 74 53 chr12 16987419 16987662 -104269868 + B4A SINE B4 39 286 -6 1 714 198 0 0 0 chr12 16987664 16987686 -104269844 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 714 539 228 64 35 chr12 16988029 16988170 -104269360 + B1F2 SINE Alu 5 149 0 1 714 217 366 41 41 chr12 16988505 16988602 -104268928 + RSINE1 SINE B4 65 161 -4 1 714 31 0 0 0 chr12 16988664 16988695 -104268835 + AT_rich Low_complexity Low_complexity 1 31 0 1 714 649 171 388 0 chr12 16988699 16988851 -104268679 + B3 SINE B2 3 213 -3 1 714 213 94 0 0 chr12 16989495 16989527 -104268003 + (ATG)n Simple_repeat Simple_repeat 1 32 0 1 714 189 0 0 0 chr12 16989762 16989783 -104267747 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 714 930 110 37 0 chr12 16989783 16989919 -104267611 - B1_Mur4 SINE Alu -9 141 1 1 714 512 240 100 8 chr12 16990307 16990437 -104267093 + ID_B1 SINE B4 79 220 -4 1 714 264 303 26 35 chr12 16990444 16990557 -104266973 + PB1D7 SINE Alu 6 120 0 1 714 968 110 12 9 chr12 16990603 16990757 -104266773 + B1_Mus1 SINE Alu 11 311 0 1 714 280 267 27 0 chr12 16990971 16991046 -104266484 - ID2 SINE ID -3 80 4 1 714 21 0 0 0 chr12 16992602 16992623 -104264907 + AT_rich Low_complexity Low_complexity 1 21 0 1 714 24 32 0 0 chr12 16993152 16993183 -104264347 + AT_rich Low_complexity Low_complexity 1 31 0 1 714 29 28 0 0 chr12 16993290 16993326 -104264204 + AT_rich Low_complexity Low_complexity 1 36 0 1 714 343 244 63 53 chr12 16996160 16996255 -104261275 + PB1D7 SINE Alu 12 107 -13 1 714 252 181 319 0 chr12 16996390 16996462 -104261068 - PB1D7 SINE Alu -23 94 1 1 714 1040 68 0 0 chr12 16996748 16996880 -104260650 + B1_Mus2 SINE Alu 1 132 -15 1 714 234 304 68 10 chr12 16997185 16997288 -104260242 + PB1 SINE Alu 9 117 -10 1 714 1386 65 11 21 chr12 16997354 16997543 -104259987 + B2_Mm1t SINE B2 2 188 -5 1 714 582 238 220 6 chr12 16997598 16997771 -104259759 - ID_B1 SINE B4 -4 220 11 1 714 369 0 0 0 chr12 16997790 16997831 -104259699 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 714 617 233 8 0 chr12 16997848 16997977 -104259553 - B1_Mur1 SINE Alu -19 130 1 1 714 450 0 0 0 chr12 16999483 16999533 -104257997 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 714 954 206 50 20 chr12 16999575 16999773 -104257757 + B3 SINE B2 3 206 -10 1 714 415 228 99 0 chr12 16999802 16999903 -104257627 - PB1D9 SINE Alu -8 112 2 1 714 185 240 19 74 chr12 16999916 16999970 -104257560 - MIR3 SINE MIR -47 161 111 1 714 189 327 0 18 chr12 17000096 17000152 -104257378 - L3 LINE CR1 -1074 3415 3361 1 714 27 29 0 0 chr12 17000443 17000477 -104257053 + AT_rich Low_complexity Low_complexity 1 34 0 2 714 507 185 37 37 chr12 17000491 17000605 -104256925 - RSINE1 SINE B4 -46 119 5 3 714 429 279 0 35 chr12 17001873 17001988 -104255542 + RSINE1 SINE B4 1 111 -54 4 714 782 174 227 0 chr12 17002794 17002966 -104254564 - B3 SINE B2 -1 215 5 5 714 271 279 128 0 chr12 17003516 17003602 -104253928 + ID_B1 SINE B4 88 184 -40 6 714 237 284 0 57 chr12 17006903 17007026 -104250504 + (CTCCG)n Simple_repeat Simple_repeat 2 117 0 7 714 744 42 0 0 chr12 17007322 17007418 -104250112 + (CA)n Simple_repeat Simple_repeat 2 97 0 8 714 360 0 0 0 chr12 17007472 17007512 -104250018 + (CTAA)n Simple_repeat Simple_repeat 3 42 0 9 714 234 91 0 0 chr12 17007512 17007545 -104249985 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 714 468 0 0 0 chr12 17007545 17007597 -104249933 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 714 292 277 36 0 chr12 17007597 17007680 -104249850 - B1F1 SINE Alu -62 87 2 1 714 224 310 195 0 chr12 17007694 17007781 -104249749 - PB1D10 SINE Alu -9 108 5 1 714 244 125 0 0 chr12 17007944 17007984 -104249546 - B4 SINE B4 -205 87 48 1 714 312 322 37 58 chr12 17008219 17008410 -104249120 + RMER15 LTR ERVL 373 559 -16 1 714 302 222 14 14 chr12 17008923 17008996 -104248534 - RCHARR1 DNA MER1_type 0 974 902 1 714 927 224 60 95 chr12 17009269 17009515 -104248015 - RCHARR1 DNA MER1_type -76 898 671 1 714 966 242 24 0 chr12 17009515 17009726 -104247804 - B3 SINE B2 0 216 1 1 714 927 224 60 95 chr12 17009726 17009859 -104247671 - RCHARR1 DNA MER1_type -304 670 532 1 714 1218 70 12 0 chr12 17009878 17010050 -104247480 + B2_Mm2 SINE B2 2 175 -20 1 714 2868 35 0 3 chr12 17010071 17010418 -104247112 - ORR1A0 LTR MaLR 0 346 1 1 714 210 275 0 0 chr12 17010429 17010498 -104247032 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 714 636 307 83 4 chr12 17010501 17010730 -104246800 - RCHARR1 DNA MER1_type -693 281 35 1 714 4947 121 89 5 chr12 17011339 17012214 -104245316 - RMER17B LTR ERVK -9 949 1 2 714 703 161 124 37 chr12 17013410 17013571 -104243959 + B3 SINE B2 1 175 -41 2 714 602 256 0 0 chr12 17014327 17014464 -104243066 - B1_Mur1 SINE Alu -12 137 1 2 714 248 329 0 12 chr12 17014493 17014573 -104242957 + B3 SINE B2 2 80 -136 2 714 195 129 0 0 chr12 17014669 17014700 -104242830 + (A)n Simple_repeat Simple_repeat 1 31 0 2 714 734 201 29 0 chr12 17014727 17014866 -104242664 - B1_Mur4 SINE Alu -5 145 3 2 714 771 182 0 0 chr12 17015188 17015314 -104242216 - B3 SINE B2 -86 130 5 2 714 832 114 19 12 chr12 17015626 17015786 -104241744 + (TCC)n Simple_repeat Simple_repeat 1 161 0 2 714 281 262 150 39 chr12 17015786 17015913 -104241617 - ID_B1 SINE B4 0 224 84 2 714 424 193 211 0 chr12 17015800 17015914 -104241616 - B1_Mur1 SINE Alu -10 139 2 3 714 259 194 29 15 chr12 17015914 17015964 -104241566 - B1_Mus1 SINE Alu -71 77 27 3 714 235 281 0 0 chr12 17015916 17015980 -104241550 - ID_B1 SINE B4 -70 154 91 3 714 2123 152 19 11 chr12 17015985 17016356 -104241174 + ORR1D1 LTR MaLR 1 374 0 3 714 624 270 22 22 chr12 17016405 17016583 -104240947 - B3A SINE B2 -16 182 5 3 714 612 300 210 17 chr12 17016905 17017207 -104240323 + L1MB3 LINE L1 5482 5841 -342 3 714 1761 164 3 40 chr12 17018650 17018865 -104238665 - MTC LTR MaLR -8 413 201 3 714 851 159 20 76 chr12 17018865 17019062 -104238468 - B2_Mm2 SINE B2 -8 187 2 3 714 1761 164 3 40 chr12 17019062 17019170 -104238360 - MTC LTR MaLR -221 200 102 3 714 3964 169 67 14 chr12 17019170 17019862 -104237668 + RMER1A Other Other 264 874 -156 3 714 462 18 0 0 chr12 17019862 17019917 -104237613 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 714 3964 157 72 7 chr12 17019917 17020015 -104237515 + RMER1A Other Other 875 1020 -10 3 714 589 147 10 10 chr12 17020043 17020146 -104237384 - MTC LTR MaLR -289 107 5 3 714 2341 175 142 0 chr12 17020709 17021201 -104236329 + RMER15 LTR ERVL 1 562 -13 4 714 514 241 212 11 chr12 17021572 17021761 -104235769 + RMER21B LTR ERV1 339 565 -277 4 714 1263 96 3 0 chr12 17022873 17023169 -104234361 + (TCTA)n Simple_repeat Simple_repeat 1 297 0 4 714 332 43 0 21 chr12 17023169 17023216 -104234314 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 4 714 426 69 0 0 chr12 17023216 17023274 -104234256 + (CCTA)n Simple_repeat Simple_repeat 1 58 0 4 714 643 112 8 8 chr12 17023283 17023400 -104234130 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 4 714 307 243 14 0 chr12 17023782 17023856 -104233674 - PB1D10 SINE Alu -3 114 40 4 714 369 251 28 22 chr12 17024193 17024296 -104233234 + PB1D10 SINE Alu 13 120 0 4 714 219 319 177 20 chr12 17024298 17024445 -104233085 - MIRb SINE MIR -5 257 88 4 714 197 65 0 31 chr12 17024542 17024574 -104232956 + (TCC)n Simple_repeat Simple_repeat 2 32 0 4 714 1123 62 7 0 chr12 17024709 17024855 -104232675 - B1_Mus1 SINE Alu 0 148 2 5 714 489 279 91 0 chr12 17024894 17025091 -104232439 + ID_B1 SINE B4 3 217 -7 5 714 515 141 11 0 chr12 17025556 17025648 -104231882 + CT-rich Low_complexity Low_complexity 2 94 0 5 714 709 161 21 28 chr12 17025678 17025819 -104231711 - B1_Mur3 SINE Alu 0 149 10 5 714 219 69 0 0 chr12 17026113 17026142 -104231388 + (CACG)n Simple_repeat Simple_repeat 2 30 0 5 714 236 337 38 19 chr12 17026979 17027085 -104230445 - MIRb SINE MIR -42 226 119 5 714 467 146 195 26 chr12 17027255 17027366 -104230164 + MTC LTR MaLR 1 130 -291 5 714 1128 129 0 0 chr12 17027366 17027537 -104229993 - MT2B LTR ERVL 0 601 431 5 714 3544 125 14 12 chr12 17027537 17028105 -104229425 - RLTR1D LTR ERV1 0 605 37 5 714 3090 99 0 0 chr12 17028114 17028548 -104228982 - MT2B LTR ERVL -167 434 1 5 714 1257 123 184 4 chr12 17028548 17028792 -104228738 + MTC LTR MaLR 126 413 -8 5 714 560 162 114 0 chr12 17028798 17028903 -104228627 + MTC-int LTR MaLR 5 121 -1137 5 714 1118 75 7 0 chr12 17028904 17029051 -104228479 + B1_Mus1 SINE Alu 1 148 0 5 714 240 141 0 66 chr12 17029057 17029148 -104228382 + A-rich Low_complexity Low_complexity 4 88 0 6 714 291 111 0 0 chr12 17029160 17029205 -104228325 + MTC-int LTR MaLR 106 150 -1108 5 714 313 94 21 3 chr12 17029200 17029254 -104228276 + MTC LTR MaLR 366 421 0 5 714 688 251 68 33 chr12 17030435 17030764 -104226766 - MTEa LTR MaLR 0 379 1 6 714 445 165 1 6 chr12 17030851 17030953 -104226577 - B3A SINE B2 -69 129 31 6 714 229 188 0 0 chr12 17031202 17031250 -104226280 - B1_Mur1 SINE Alu -5 144 97 6 714 646 195 31 0 chr12 17031250 17031378 -104226152 + B3 SINE B2 79 210 -6 6 714 330 67 0 0 chr12 17031384 17031429 -104226101 + (CAA)n Simple_repeat Simple_repeat 2 46 0 6 714 561 258 90 0 chr12 17031634 17031801 -104225729 - B3A SINE B2 -15 183 2 6 714 478 271 0 43 chr12 17032259 17032398 -104225132 - B3A SINE B2 0 198 66 6 714 243 219 14 72 chr12 17032535 17032604 -104224926 + MIR3 SINE MIR 123 187 -21 6 714 1414 199 20 7 chr12 17032890 17033188 -104224342 + RLTR18B LTR ERVK 6 307 -205 6 714 1063 191 34 5 chr12 17033219 17033424 -104224106 + RLTR18B LTR ERVK 297 507 -5 6 714 198 0 0 0 chr12 17033429 17033451 -104224079 + (CCCCCT)n Simple_repeat Simple_repeat 2 23 0 7 714 376 316 56 51 chr12 17034061 17034258 -104223272 + MLT1A1 LTR MaLR 1 198 -210 7 714 1923 106 3 17 chr12 17034522 17034821 -104222709 - ORR1A3 LTR MaLR -31 295 1 7 714 255 250 0 56 chr12 17034834 17034906 -104222624 - B4 SINE B4 -218 74 7 7 714 899 183 108 0 chr12 17035048 17035234 -104222296 - B3 SINE B2 -10 206 1 7 714 750 288 0 39 chr12 17035681 17035887 -104221643 - B3A SINE B2 0 198 1 7 714 980 191 49 20 chr12 17036221 17036424 -104221106 - B3 SINE B2 -6 210 2 7 714 190 0 67 0 chr12 17037055 17037085 -104220445 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 7 714 343 141 15 15 chr12 17037984 17038049 -104219481 - MTE2b LTR MaLR 0 379 315 7 714 433 148 73 12 chr12 17038049 17038213 -104219317 + GA-rich Low_complexity Low_complexity 3 176 0 7 714 890 254 125 0 chr12 17038241 17038489 -104219041 - MTE2b LTR MaLR -85 294 16 7 714 342 67 0 0 chr12 17038753 17038798 -104218732 + (CCTG)n Simple_repeat Simple_repeat 2 46 0 8 714 366 23 0 0 chr12 17038806 17038849 -104218681 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 714 403 283 124 0 chr12 17038849 17038962 -104218568 - B1_Mur3 SINE Alu -16 133 7 8 715 351 0 0 0 chr12 17040146 17040185 -104217345 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 715 557 156 31 0 chr12 17042323 17042419 -104215111 - ID_B1 SINE B4 -3 221 123 8 715 201 108 0 0 chr12 17042662 17042699 -104214831 + (C)n Simple_repeat Simple_repeat 1 37 0 8 715 314 45 0 22 chr12 17043345 17043390 -104214140 + (TAA)n Simple_repeat Simple_repeat 1 44 0 8 715 374 278 0 0 chr12 17043983 17044073 -104213457 - ID_B1 SINE B4 -48 176 87 8 715 768 237 82 13 chr12 17044467 17044661 -104212869 - B3 SINE B2 -6 210 7 8 715 513 299 15 0 chr12 17044661 17044795 -104212735 - MTEa LTR MaLR -200 179 44 8 715 369 0 0 0 chr12 17044870 17044911 -104212619 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 715 431 268 14 28 chr12 17045695 17045837 -104211693 + B1F SINE Alu 1 140 -9 9 715 508 285 19 25 chr12 17045848 17046010 -104211520 + RSINE1 SINE B4 5 165 0 9 715 372 104 0 0 chr12 17046010 17046077 -104211453 + (CTAA)n Simple_repeat Simple_repeat 2 68 0 9 715 594 41 0 0 chr12 17046688 17046761 -104210769 + (CA)n Simple_repeat Simple_repeat 2 74 0 9 715 576 96 26 0 chr12 17046761 17046876 -104210654 + (GA)n Simple_repeat Simple_repeat 1 118 0 9 715 578 248 0 0 chr12 17046909 17047026 -104210504 - ORR1E LTR MaLR -242 117 1 9 715 1722 176 74 8 chr12 17047440 17047819 -104209711 + RMER6D LTR ERVK 155 558 -162 9 715 543 272 144 0 chr12 17048048 17048221 -104209309 - B3A SINE B2 0 198 1 9 715 663 292 26 110 chr12 17048221 17048529 -104209001 + MTE2a LTR MaLR 3 284 -95 9 715 255 344 0 32 chr12 17048555 17048648 -104208882 - PB1 SINE Alu -7 120 31 1 715 685 213 29 0 chr12 17048879 17049015 -104208515 + B1_Mus2 SINE Alu 1 140 -7 1 715 195 42 0 0 chr12 17049015 17049039 -104208491 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 715 613 296 108 44 chr12 17049041 17049292 -104208238 + B4A SINE B4 13 279 -13 1 715 335 308 11 0 chr12 17049378 17049469 -104208061 + B3 SINE B2 111 202 -14 1 715 189 211 0 0 chr12 17049540 17049592 -104207938 + (ATG)n Simple_repeat Simple_repeat 3 54 0 1 715 486 0 0 0 chr12 17049830 17049884 -104207646 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 715 1446 179 125 15 chr12 17050888 17051223 -104206307 + ORR1D1 LTR MaLR 1 372 -2 1 715 371 350 30 96 chr12 17051510 17051682 -104205848 - LTR37A LTR ERV1 -15 411 252 1 715 596 281 18 90 chr12 17051682 17051905 -104205625 + ID_B1 SINE B4 2 208 -16 1 715 371 350 30 96 chr12 17051905 17052067 -104205463 - LTR37A LTR ERV1 -175 251 99 1 715 831 83 18 3 chr12 17052195 17052322 -104205208 + L1Md_F2 LINE L1 5474 5615 -559 1 715 7792 43 6 4 chr12 17052322 17053315 -104204215 + L1Md_F2 LINE L1 5587 6581 -1 1 715 599 154 75 23 chr12 17053315 17053336 -104204194 + L1_Mur3 LINE L1 5582 5608 -272 1 715 828 218 69 194 chr12 17053636 17054069 -104203461 - MTEb LTR MaLR 0 379 1 1 715 552 216 13 13 chr12 17054269 17054428 -104203102 + GA-rich Low_complexity Low_complexity 2 160 0 1 715 333 238 0 0 chr12 17054981 17055082 -104202448 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 715 889 285 39 75 chr12 17055097 17055337 -104202193 - B4 SINE B4 -16 276 38 1 715 2424 143 35 0 chr12 17055337 17055742 -104201788 + MTC LTR MaLR 3 421 0 1 715 889 285 39 75 chr12 17055742 17055782 -104201748 - B4 SINE B4 -255 37 6 1 715 899 205 6 6 chr12 17056527 17056684 -104200846 + RSINE1 SINE B4 5 161 -4 1 715 267 312 167 30 chr12 17057331 17057463 -104200067 + RMER15 LTR ERVL 422 571 -4 1 715 194 233 118 27 chr12 17058256 17058331 -104199199 - MIR3 SINE MIR -77 191 101 1 715 380 296 6 0 chr12 17058478 17058654 -104198876 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 715 877 239 117 0 chr12 17058679 17058867 -104198663 - B4 SINE B4 -79 213 4 1 715 283 218 525 8 chr12 17059939 17060057 -104197473 - ORR1E LTR MaLR 0 379 201 1 715 399 220 6 12 chr12 17060057 17060227 -104197303 + GA-rich Low_complexity Low_complexity 2 170 0 1 715 483 161 9 26 chr12 17060235 17060350 -104197180 + G-rich Low_complexity Low_complexity 4 116 0 1 715 792 276 50 0 chr12 17060350 17060531 -104196999 - ORR1E LTR MaLR -169 190 1 1 715 470 338 118 20 chr12 17060923 17061228 -104196302 + L1MC LINE L1 2941 3275 -2871 1 715 350 291 160 21 chr12 17061435 17061579 -104195951 + L1MC LINE L1 3275 3438 -2708 1 715 930 197 65 10 chr12 17061579 17061779 -104195751 + B3 SINE B2 2 212 -4 1 715 769 297 82 47 chr12 17061784 17062293 -104195237 + L1M5 LINE L1 3436 3962 -2184 1 715 211 350 0 0 chr12 17062356 17062416 -104195114 - RSINE1 SINE B4 -105 60 1 1 715 279 0 0 0 chr12 17062483 17062514 -104195016 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 715 913 264 158 3 chr12 17062569 17062892 -104194638 - Lx8 LINE L1 -137 7336 6964 1 715 891 109 29 14 chr12 17063039 17063178 -104194352 + B1_Mur4 SINE Alu 1 141 -9 1 715 213 39 0 0 chr12 17063179 17063205 -104194325 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 715 207 0 0 0 chr12 17063205 17063227 -104194303 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 715 745 249 40 11 chr12 17063260 17063435 -104194095 - B3A SINE B2 -18 180 1 1 715 294 294 130 6 chr12 17063491 17063652 -104193878 - L1M4c LINE L1 -6057 327 147 1 715 249 267 27 0 chr12 17063663 17063738 -104193792 - L1M4c LINE L1 -6281 103 27 1 715 398 242 154 96 chr12 17063785 17064109 -104193421 - L1MC5 LINE L1 -995 6966 6624 1 715 414 269 90 74 chr12 17064657 17064846 -104192684 + B3A SINE B2 1 192 -6 1 715 332 289 51 34 chr12 17065128 17065141 -104192389 - B1F SINE Alu -1 148 29 1 715 449 286 0 0 chr12 17065141 17065246 -104192284 - ID_B1 SINE B4 -10 214 110 1 715 938 265 64 0 chr12 17065367 17065601 -104191929 + ORR1D2 LTR MaLR 8 256 -114 1 715 341 283 40 0 chr12 17065631 17065730 -104191800 - PB1D10 SINE Alu -14 103 1 1 715 723 254 20 91 chr12 17065888 17066087 -104191443 + B3 SINE B2 1 185 -10 1 715 4743 28 0 0 chr12 17066400 17066936 -104190594 + L1Md_T LINE L1 6047 6582 0 1 715 519 252 32 24 chr12 17067106 17067187 -104190343 + B4A SINE B4 4 85 -207 1 715 230 336 63 14 chr12 17067187 17067329 -104190201 + B1F1 SINE Alu 1 149 0 1 715 590 323 38 0 chr12 17067393 17067551 -104189979 - RSINE1 SINE B4 0 165 2 1 715 351 0 0 0 chr12 17067610 17067649 -104189881 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 715 204 362 53 20 chr12 17068487 17068639 -104188891 + MIRb SINE MIR 97 253 -15 1 715 373 271 18 27 chr12 17068943 17069053 -104188477 + PB1D10 SINE Alu 1 109 -8 1 715 225 0 0 0 chr12 17070569 17070594 -104186936 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1 715 616 269 37 136 chr12 17071075 17071398 -104186132 + B4 SINE B4 2 292 0 1 715 221 184 20 0 chr12 17071398 17071447 -104186083 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 715 222 91 0 0 chr12 17071465 17071498 -104186032 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 715 241 292 124 47 chr12 17071507 17071676 -104185854 + MIR3 SINE MIR 2 183 -25 1 715 2381 112 90 0 chr12 17072025 17072390 -104185140 + MTC LTR MaLR 24 421 0 1 715 4494 147 12 19 chr12 17072394 17073137 -104184393 + MTC-int LTR MaLR 1 738 -520 1 715 1107 141 3 0 chr12 17074116 17074430 -104183100 + (TG)n Simple_repeat Simple_repeat 1 315 0 1 715 186 240 0 57 chr12 17074598 17074651 -104182879 + MIR SINE MIR 107 156 -106 1 715 324 0 0 0 chr12 17074913 17074949 -104182581 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 715 1211 140 364 31 chr12 17075007 17075295 -104182235 - ORR1B1 LTR MaLR -8 386 3 1 715 195 164 16 32 chr12 17075419 17075482 -104182048 + CT-rich Low_complexity Low_complexity 3 64 0 1 715 304 249 99 11 chr12 17076268 17076384 -104181146 + MIRb SINE MIR 49 172 -90 1 715 396 329 39 26 chr12 17077003 17077159 -104180371 - MamGypLTR1c LTR Gypsy -65 738 581 1 715 432 97 0 0 chr12 17077715 17077777 -104179753 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 715 349 355 36 7 chr12 17077777 17077916 -104179614 - RSINE1 SINE B4 -20 145 3 1 715 870 184 115 78 chr12 17078301 17078519 -104179011 + URR1A DNA MER1_type 1 226 0 1 715 198 167 0 0 chr12 17079200 17079236 -104178294 + (CACG)n Simple_repeat Simple_repeat 4 39 0 1 715 255 200 20 0 chr12 17080078 17080128 -104177402 + ID4_ SINE ID 31 81 -2 1 715 232 118 0 0 chr12 17080146 17080180 -104177350 + ID_B1 SINE B4 175 208 -16 1 715 312 48 0 0 chr12 17080608 17080650 -104176880 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 1 715 5529 114 24 82 chr12 17080679 17081617 -104175913 + RMER19B LTR ERVK 1 885 -17 1 715 1194 82 0 0 chr12 17081617 17081764 -104175766 + B1_Mus2 SINE Alu 1 147 0 1 715 1826 204 60 0 chr12 17081802 17082155 -104175375 + Lx5 LINE L1 6633 7006 -44 1 715 706 259 136 80 chr12 17082669 17083219 -104174311 - L1MB7 LINE L1 -174 6010 5430 1 715 380 270 104 35 chr12 17083249 17083479 -104174051 - L1M4 LINE L1 -5768 774 529 1 715 421 238 38 0 chr12 17084186 17084291 -104173239 - MER2 DNA MER2_type -135 210 102 1 715 386 316 88 61 chr12 17084464 17084953 -104172577 + L1MD LINE L1 3839 4354 -1792 1 715 3134 78 5 0 chr12 17084953 17085351 -104172179 - MTB LTR MaLR 0 400 1 1 715 297 316 89 61 chr12 17085351 17085383 -104172147 + L1MD LINE L1 4355 4377 -1769 1 715 472 256 8 49 chr12 17085383 17085506 -104172024 + PB1D7 SINE Alu 3 120 0 1 715 297 316 89 61 chr12 17085506 17085678 -104171852 + L1MD LINE L1 4378 4552 -1594 1 715 912 245 14 5 chr12 17085687 17085904 -104171626 + ID_B1 SINE B4 1 219 -5 1 715 834 241 131 0 chr12 17086386 17086631 -104170899 + B4 SINE B4 2 278 -14 1 715 348 305 129 8 chr12 17087379 17087511 -104170019 + B1F SINE Alu 2 149 0 1 715 1076 210 56 46 chr12 17088360 17088644 -104168886 + B4 SINE B4 2 288 -4 1 715 627 267 153 38 chr12 17089574 17089835 -104167695 + B4A SINE B4 2 292 0 1 715 341 190 0 33 chr12 17090426 17090486 -104167044 + B1_Mus2 SINE Alu 2 59 -88 1 715 873 129 0 74 chr12 17090488 17090980 -104166550 + (CAGAGA)n Simple_repeat Simple_repeat 1 455 0 1 715 586 285 0 0 chr12 17090721 17091019 -104166511 + GA-rich Low_complexity Low_complexity 1 298 0 1 715 299 61 0 125 chr12 17091030 17091086 -104166444 + 4.5SRNA scRNA scRNA 40 88 -6 1 715 709 112 0 0 chr12 17091036 17091134 -104166396 + B1_Mus2 SINE Alu 42 139 -8 1 715 200 319 82 16 chr12 17092104 17092210 -104165320 + MIRc SINE MIR 21 132 -136 1 715 1959 206 36 19 chr12 17092533 17092945 -104164585 + MTD LTR MaLR 1 419 0 1 715 445 264 40 73 chr12 17093411 17093562 -104163968 - RSINE1 SINE B4 -8 157 12 1 715 2726 113 16 0 chr12 17093952 17094340 -104163190 - MTC LTR MaLR -1 420 27 1 715 239 330 48 75 chr12 17095036 17095223 -104162307 - RMER13B LTR ERVK -9 899 718 1 715 491 239 62 27 chr12 17095682 17095794 -104161736 + PB1 SINE Alu 5 120 -7 1 715 661 274 13 7 chr12 17095804 17095958 -104161572 + RSINE1 SINE B4 2 156 -9 1 715 1065 275 92 19 chr12 17096825 17097196 -104160334 + MTD LTR MaLR 9 406 -13 1 715 206 0 0 65 chr12 17097296 17097327 -104160203 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 1 715 432 0 0 0 chr12 17097787 17097835 -104159695 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 715 391 237 13 0 chr12 17098519 17098825 -104158705 + (TG)n Simple_repeat Simple_repeat 1 310 0 1 715 250 333 71 36 chr12 17100363 17100475 -104157055 + B1_Mur1 SINE Alu 34 149 0 1 715 491 311 0 0 chr12 17100473 17100579 -104156951 + RSINE1 SINE B4 3 108 -57 1 715 603 0 0 0 chr12 17100860 17100927 -104156603 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 715 295 247 130 0 chr12 17101104 17101181 -104156349 + MIR SINE MIR 84 170 -92 2 715 402 21 0 0 chr12 17101254 17101301 -104156229 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 715 225 293 0 17 chr12 17101336 17101395 -104156135 + MER34 LTR ERV1 48 105 -437 2 715 610 178 15 92 chr12 17101919 17102049 -104155481 - PB1D9 SINE Alu 0 120 1 2 715 801 291 13 22 chr12 17102056 17102281 -104155249 - ID_B1 SINE B4 -1 223 1 2 715 304 219 97 79 chr12 17102320 17102434 -104155096 - MLT1E2 LTR MaLR -503 124 9 2 715 1941 186 24 32 chr12 17102547 17102924 -104154606 - ORR1D1 LTR MaLR 0 374 1 2 715 198 0 0 0 chr12 17103252 17103274 -104154256 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2 715 1099 97 7 0 chr12 17103283 17103428 -104154102 - B1_Mus1 SINE Alu -1 147 2 2 715 199 213 32 32 chr12 17103454 17103517 -104154013 - MIR SINE MIR -106 102 40 2 715 501 351 17 61 chr12 17104073 17104370 -104153160 + B4A SINE B4 9 292 0 2 715 29 28 0 0 chr12 17105144 17105180 -104152350 + AT_rich Low_complexity Low_complexity 1 36 0 2 715 1129 217 0 9 chr12 17105257 17105471 -104152059 - B3 SINE B2 0 216 5 2 715 248 225 153 14 chr12 17105519 17105591 -104151939 - ID4_ SINE ID 0 83 2 2 715 297 374 9 9 chr12 17105615 17105731 -104151799 - B1_Mus2 SINE Alu -31 116 1 2 715 450 0 0 0 chr12 17105744 17105794 -104151736 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 715 614 248 154 27 chr12 17106039 17106259 -104151271 - MLT1C LTR MaLR -7 460 213 2 715 1289 238 88 9 chr12 17106262 17106580 -104150950 - MTE2b LTR MaLR -4 375 33 2 715 429 273 139 22 chr12 17106584 17106764 -104150766 - MLT1C LTR MaLR -247 220 20 2 715 227 244 0 0 chr12 17106786 17106827 -104150703 - MLT1J LTR MaLR -364 148 108 2 715 479 236 22 0 chr12 17107109 17107198 -104150332 - RSINE1 SINE B4 -32 133 43 2 715 658 299 22 22 chr12 17107260 17107441 -104150089 - B3A SINE B2 -16 182 2 2 715 570 338 86 57 chr12 17107978 17108314 -104149216 - ORR1E LTR MaLR 0 359 14 2 715 1669 36 0 0 chr12 17109137 17109329 -104148201 + B2_Mm1a SINE B2 2 193 0 2 715 1862 197 58 33 chr12 17113096 17113495 -104144035 - MTD LTR MaLR -15 404 9 2 715 1022 153 196 0 chr12 17114362 17114551 -104142979 - URR1A DNA MER1_type 0 226 1 2 715 414 0 0 0 chr12 17115338 17115384 -104142146 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 2 715 392 279 53 53 chr12 17115841 17115877 -104141653 - B4 SINE B4 0 292 256 2 715 219 69 0 0 chr12 17115877 17115906 -104141624 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 715 490 250 28 13 chr12 17115906 17116039 -104141491 - B4A SINE B4 -37 255 123 2 715 1226 144 84 0 chr12 17117150 17117352 -104140178 + URR1B DNA MER1_type 7 225 0 2 715 220 227 0 0 chr12 17117382 17117426 -104140104 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 2 715 1578 172 39 64 chr12 17117427 17117877 -104139653 - MT2A LTR ERVL -45 488 1 2 715 525 261 92 68 chr12 17118511 17118704 -104138826 - B4A SINE B4 0 165 2 2 715 216 336 33 83 chr12 17118715 17118835 -104138695 + MIRm SINE MIR 38 151 -117 2 715 864 248 63 35 chr12 17119457 17119741 -104137789 - B4 SINE B4 0 292 1 2 715 297 68 0 0 chr12 17121996 17122040 -104135490 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 715 1071 195 315 14 chr12 17122049 17122335 -104135195 - MTE2b LTR MaLR -5 374 3 2 715 248 254 14 0 chr12 17122338 17122409 -104135121 - L1MA4 LINE L1 -375 5925 5854 2 715 10576 53 1 6 chr12 17123246 17124611 -104132919 - L1Md_F2 LINE L1 -1 5882 4524 2 715 5563 55 10 14 chr12 17124611 17124713 -104132817 + L1Md_F2 LINE L1 5870 5971 -611 2 715 2367 112 147 26 chr12 17124713 17125143 -104132387 - RLTR45 LTR ERVK 0 482 1 2 715 5563 55 10 14 chr12 17125143 17125755 -104131775 + L1Md_F2 LINE L1 5972 6581 -1 2 715 201 74 0 0 chr12 17125771 17125798 -104131732 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2 715 363 23 0 0 chr12 17126161 17126205 -104131325 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 715 513 0 0 0 chr12 17126447 17126504 -104131026 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 2 715 346 246 178 30 chr12 17126615 17126812 -104130718 + L2 LINE L2 2854 3079 -340 2 715 353 286 32 32 chr12 17127325 17127448 -104130082 + B3A SINE B2 72 194 -4 2 715 2431 71 3 0 chr12 17128652 17128961 -104128569 - MTA_Mm LTR MaLR 0 396 87 2 715 2210 119 41 38 chr12 17128961 17129327 -104128203 + IAPLTR1_Mm LTR ERVK 1 367 0 2 715 54863 20 7 7 chr12 17129327 17135795 -104121735 + IAPEz-int LTR ERVK 8 6481 0 2 715 2210 119 41 38 chr12 17135795 17136161 -104121369 + IAPLTR1_Mm LTR ERVK 1 367 0 2 715 777 33 0 0 chr12 17136161 17136253 -104121277 - MTA_Mm LTR MaLR -304 92 1 2 715 1203 68 0 0 chr12 17136326 17136474 -104121056 + B1_Mus1 SINE Alu 1 148 0 2 715 388 279 21 7 chr12 17136508 17136649 -104120881 + (TA)n Simple_repeat Simple_repeat 2 144 0 2 715 492 312 53 85 chr12 17136676 17137089 -104120441 + LTR37A LTR ERV1 14 413 -13 2 715 391 326 90 120 chr12 17137302 17137678 -104119852 + MLT1A0 LTR MaLR 1 365 0 2 715 331 344 26 16 chr12 17138468 17138609 -104118921 + MIRc SINE MIR 8 152 -124 2 715 233 241 125 11 chr12 17138810 17138898 -104118632 + MTE2a LTR MaLR 282 379 0 2 715 1061 156 167 0 chr12 17141017 17141209 -104116321 - URR1B DNA MER1_type 0 225 2 2 715 396 0 0 0 chr12 17142114 17142158 -104115372 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 715 273 186 0 0 chr12 17142179 17142249 -104115281 + CT-rich Low_complexity Low_complexity 1 70 0 2 715 896 310 41 41 chr12 17142272 17142541 -104114989 - B4A SINE B4 -22 270 2 2 715 213 371 119 6 chr12 17142744 17142912 -104114618 + MIR SINE MIR 32 218 -44 2 715 186 240 20 20 chr12 17143505 17143556 -104113974 + L3 LINE CR1 4226 4276 -213 2 715 2190 93 18 24 chr12 17143711 17144042 -104113488 - ORR1A4 LTR MaLR 0 329 1 2 715 243 0 0 0 chr12 17144203 17144230 -104113300 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 715 1832 143 169 48 chr12 17144336 17144732 -104112798 + RLTR41 LTR ERV1 1 444 -2 2 715 612 0 0 0 chr12 17144771 17144839 -104112691 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 715 827 290 151 66 chr12 17145274 17145606 -104111924 + MTEa LTR MaLR 4 363 -16 2 715 1112 59 15 0 chr12 17145739 17145875 -104111655 - B1_Mus2 SINE Alu -9 138 1 2 715 965 239 6 0 chr12 17145994 17146174 -104111356 + B3A SINE B2 2 182 -16 2 715 208 216 0 0 chr12 17146174 17146224 -104111306 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 715 1862 246 63 108 chr12 17146245 17146608 -104110922 + L1MB7 LINE L1 5319 5693 -491 2 715 459 0 0 0 chr12 17146608 17146659 -104110871 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 715 1862 246 63 108 chr12 17146659 17147157 -104110373 + L1MB7 LINE L1 5694 6141 -43 2 715 1125 120 130 5 chr12 17148451 17148643 -104108887 - URR1A DNA MER1_type -10 216 1 2 715 3309 103 226 109 chr12 17148797 17149431 -104108099 - RLTR25A LTR ERVK 0 1028 321 2 715 597 170 0 0 chr12 17149433 17149545 -104107985 + (TA)n Simple_repeat Simple_repeat 2 113 0 2 715 860 76 0 32 chr12 17149548 17149671 -104107859 - B1_Mus1 SINE Alu 0 148 30 2 715 1504 153 112 45 chr12 17149664 17149978 -104107552 - RLTR25A LTR ERVK -691 337 3 2 715 2643 151 34 46 chr12 17150207 17150706 -104106824 - RLTR28 LTR ERVL -31 493 1 2 715 304 231 25 13 chr12 17151530 17151609 -104105921 - L1ME4a LINE L1 -1 6123 6044 2 715 417 167 0 0 chr12 17151629 17151707 -104105823 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 715 303 353 130 33 chr12 17151739 17152038 -104105492 - L1ME4a LINE L1 -160 5964 5637 2 715 237 254 0 0 chr12 17152258 17152313 -104105217 - B1F SINE Alu -5 144 90 2 715 228 35 0 0 chr12 17152432 17152461 -104105069 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 2 715 299 260 96 0 chr12 17152497 17152570 -104104960 - ID4 SINE ID 0 83 4 2 715 1008 96 0 0 chr12 17152570 17152716 -104104814 + (TTCTC)n Simple_repeat Simple_repeat 4 149 0 2 715 258 196 54 0 chr12 17152770 17152826 -104104704 - ID_B1 SINE B4 -19 205 147 2 715 313 175 32 0 chr12 17152794 17152857 -104104673 - B1F SINE Alu -19 130 66 2 715 478 335 78 37 chr12 17152867 17153084 -104104446 - MLT1A LTR MaLR -139 235 10 2 715 339 25 0 0 chr12 17154098 17154138 -104103392 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 715 223 233 167 48 chr12 17155859 17155985 -104101545 - MIRb SINE MIR -89 179 35 2 715 605 305 20 59 chr12 17156746 17156948 -104100582 + RMER30 DNA MER1_type 8 201 -1 2 715 226 358 87 41 chr12 17157694 17157866 -104099664 + MIRb SINE MIR 63 242 -26 2 715 551 250 9 0 chr12 17157880 17157988 -104099542 - RSINE1 SINE B4 -54 111 3 2 715 768 11 0 0 chr12 17158161 17158250 -104099280 + (TATTG)n Simple_repeat Simple_repeat 2 90 0 2 715 256 189 18 54 chr12 17158258 17158314 -104099216 - ID_B1 SINE B4 -15 209 156 2 715 303 313 10 86 chr12 17158294 17158410 -104099120 - PB1D7 SINE Alu -23 126 20 2 715 226 274 98 50 chr12 17158932 17159032 -104098498 - MIRm SINE MIR -105 163 44 2 715 2652 109 16 11 chr12 17159125 17159524 -104098006 - ORR1B1 LTR MaLR -8 386 3 2 715 194 351 80 58 chr12 17160104 17160328 -104097202 - L2b LINE L2 0 3375 3147 2 715 1844 171 45 48 chr12 17161554 17161910 -104095620 - ORR1C1 LTR MaLR 0 378 24 2 715 624 289 21 0 chr12 17162280 17162474 -104095056 + L1MB7 LINE L1 5758 5955 -229 2 715 367 341 77 71 chr12 17162494 17162832 -104094698 + ORR1E LTR MaLR 20 359 0 2 715 416 282 57 43 chr12 17162835 17163046 -104094484 + L1MB7 LINE L1 5955 6168 -6 2 715 244 336 142 39 chr12 17163052 17163179 -104094351 + MamGypLTR1a LTR Gypsy 598 737 -47 2 715 406 252 156 31 chr12 17163751 17163911 -104093619 + MT2A LTR ERVL 291 470 -63 2 715 435 38 0 0 chr12 17164372 17164425 -104093105 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 715 323 339 105 68 chr12 17164737 17165088 -104092442 + MLT1A0 LTR MaLR 2 365 0 3 715 306 278 73 9 chr12 17165463 17165572 -104091958 + PB1D10 SINE Alu 1 116 -1 3 715 659 197 0 116 chr12 17165576 17165714 -104091816 + B1_Mur1 SINE Alu 2 123 -26 3 715 361 241 70 7 chr12 17165726 17165816 -104091714 + ID4 SINE ID 7 99 -53 3 715 527 0 16 0 chr12 17166801 17166864 -104090666 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 715 570 330 31 16 chr12 17166920 17167111 -104090419 + B4A SINE B4 2 195 -97 3 715 1511 182 51 12 chr12 17167111 17167442 -104090088 - L1VL2 LINE L1 -5909 509 179 3 715 286 200 18 18 chr12 17167443 17167499 -104090031 + B4A SINE B4 131 186 -106 3 715 357 242 30 190 chr12 17167513 17167692 -104089838 + B4 SINE B4 139 292 0 3 715 180 235 0 0 chr12 17167708 17167776 -104089754 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 715 626 231 117 151 chr12 17168317 17168669 -104088861 + ORR1E LTR MaLR 15 354 -5 3 715 189 0 0 0 chr12 17168951 17168972 -104088558 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 3 715 318 314 58 53 chr12 17169459 17169692 -104087838 - L2b LINE L2 -21 3354 3150 3 715 293 321 20 85 chr12 17170036 17170329 -104087201 + L1M5 LINE L1 3623 3896 -2250 3 89 2993 128 34 34 chr12 17170333 17170836 -104086694 + RLTR28 LTR ERVL 22 524 0 3 716 201 121 0 0 chr12 17171070 17171103 -104086427 + (GGA)n Simple_repeat Simple_repeat 1 33 0 3 716 423 134 0 0 chr12 17171135 17171217 -104086313 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 3 716 415 143 571 41 chr12 17171412 17171582 -104085948 + MTE2b LTR MaLR 2 261 -118 3 716 368 319 14 42 chr12 17171587 17171731 -104085799 + B4A SINE B4 4 143 -149 3 716 4231 65 40 9 chr12 17172100 17172643 -104084887 - LTRIS2 LTR ERV1 0 564 5 3 716 2245 128 21 44 chr12 17173111 17173494 -104084036 + ORR1C1 LTR MaLR 1 374 -4 3 716 357 86 0 0 chr12 17173520 17173578 -104083952 + (TTGG)n Simple_repeat Simple_repeat 3 60 0 3 716 435 38 0 0 chr12 17173933 17173986 -104083544 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 3 716 359 269 92 43 chr12 17173986 17174149 -104083381 - HAL1-3A_ME LINE L1 -420 2438 2268 3 716 1080 86 7 0 chr12 17174682 17174822 -104082708 + B1_Mus2 SINE Alu 1 141 -6 3 716 963 26 0 0 chr12 17174824 17174938 -104082592 + (GAA)n Simple_repeat Simple_repeat 3 116 0 3 716 378 0 0 0 chr12 17175949 17175991 -104081539 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 716 333 263 0 0 chr12 17176042 17176217 -104081313 + (CA)n Simple_repeat Simple_repeat 2 176 0 3 716 319 197 113 0 chr12 17176287 17176358 -104081172 + HAL1-3A_ME LINE L1 1975 2053 -805 3 716 198 305 144 21 chr12 17178019 17178116 -104079414 + MIRc SINE MIR 107 215 -53 3 716 938 295 26 26 chr12 17178770 17179076 -104078454 - MER58B DNA MER1_type -8 333 28 3 716 294 278 92 57 chr12 17179104 17179245 -104078285 + MER5A1 DNA MER1_type 21 166 0 3 716 288 301 22 115 chr12 17179245 17179374 -104078156 - MER5B DNA MER1_type -59 119 4 3 716 248 181 0 0 chr12 17180832 17180878 -104076652 + MIRc SINE MIR 112 157 -51 3 716 547 201 65 175 chr12 17184124 17184341 -104073189 + ID_B1 SINE B4 4 196 -28 3 716 453 50 0 0 chr12 17184351 17184411 -104073119 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 716 640 257 30 77 chr12 17184414 17184751 -104072779 + L1MC1 LINE L1 5996 6316 -17 3 716 319 261 126 0 chr12 17185096 17185207 -104072323 - L1MC3 LINE L1 -1140 6645 6521 3 716 370 172 20 0 chr12 17185542 17185641 -104071889 + (TA)n Simple_repeat Simple_repeat 1 101 0 3 716 488 260 0 0 chr12 17185732 17185832 -104071698 + ID_B1 SINE B4 125 224 0 3 716 500 277 92 20 chr12 17186010 17186220 -104071310 - MER74B LTR ERVL -174 448 214 3 716 982 208 134 41 chr12 17186370 17186616 -104070914 - MTD LTR MaLR -148 271 3 3 716 336 277 53 18 chr12 17186792 17186906 -104070624 + Charlie5 DNA MER1_type 10 127 -2497 3 716 356 113 32 0 chr12 17187046 17187108 -104070422 + (TCTCCC)n Simple_repeat Simple_repeat 5 68 0 3 716 828 252 33 21 chr12 17187108 17187136 -104070394 - B4A SINE B4 -46 246 218 3 716 1062 144 0 0 chr12 17187136 17187316 -104070214 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 716 874 278 14 9 chr12 17187316 17187530 -104070000 - B4 SINE B4 -77 215 1 3 716 952 118 27 27 chr12 17187659 17187807 -104069723 - B1_Mur2 SINE Alu 0 149 2 3 716 707 227 85 10 chr12 17187847 17188047 -104069483 + B3 SINE B2 2 216 0 3 716 308 295 43 80 chr12 17188071 17188092 -104069438 - L1MB8 LINE L1 -254 5924 5909 3 716 2680 28 3 42 chr12 17188092 17188427 -104069103 + RLTRETN_Mm LTR ERVK 1 322 0 3 716 308 295 43 80 chr12 17188427 17188471 -104069059 - L1MB8 LINE L1 -270 5908 5868 3 716 808 216 11 16 chr12 17188471 17188659 -104068871 + Lx4B LINE L1 6865 7051 -7 3 716 313 239 33 22 chr12 17188659 17188754 -104068776 - L1MB8 LINE L1 -311 5867 5769 3 716 232 260 40 14 chr12 17189901 17189975 -104067555 + MLT1B LTR MaLR 248 323 -67 3 716 192 326 57 79 chr12 17190957 17191097 -104066433 + MIRc SINE MIR 113 249 -19 3 716 251 75 75 0 chr12 17191555 17191595 -104065935 + RLTR45 LTR ERVK 440 482 0 3 716 574 299 70 44 chr12 17191595 17191680 -104065850 - RLTR11A LTR ERVK -258 319 245 3 716 1005 123 0 0 chr12 17191680 17191859 -104065671 + (TC)n Simple_repeat Simple_repeat 1 179 0 3 716 574 243 38 29 chr12 17191859 17192054 -104065476 - RLTR11A LTR ERVK -275 253 1 3 716 501 205 9 257 chr12 17192054 17192251 -104065279 - MTE2b LTR MaLR -234 145 1 3 716 546 315 135 14 chr12 17192251 17192473 -104065057 - B4A SINE B4 -41 251 3 3 716 276 279 0 16 chr12 17192478 17192540 -104064990 + RCHARR1 DNA MER1_type 2 62 -912 3 716 213 154 0 0 chr12 17192558 17192597 -104064933 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 716 4068 223 26 10 chr12 17192600 17193480 -104064050 + RCHARR1 DNA MER1_type 64 957 -17 3 716 278 331 144 6 chr12 17193488 17193661 -104063869 - MLT1E1 LTR MaLR -52 602 406 3 716 462 340 48 35 chr12 17193675 17193937 -104063593 - MLT1E1 LTR MaLR -364 316 53 3 716 577 25 25 0 chr12 17193985 17194064 -104063466 + (TAGA)n Simple_repeat Simple_repeat 3 83 0 3 716 2790 106 13 3 chr12 17194064 17194452 -104063078 - MTA_Mm LTR MaLR 0 396 5 3 716 777 22 0 0 chr12 17194452 17194543 -104062987 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 3 716 3642 165 54 22 chr12 17194704 17195348 -104062182 + Lx3C LINE L1 6310 6974 -2 3 716 204 143 0 28 chr12 17195357 17195383 -104062147 + polypurine Low_complexity Low_complexity 2 27 0 3 716 1529 11 6 0 chr12 17195383 17195562 -104061968 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 716 1126 254 61 34 chr12 17196200 17196579 -104060951 + Lx8 LINE L1 7011 7399 -74 3 716 376 245 43 0 chr12 17196791 17196885 -104060645 + L1M4 LINE L1 4763 4860 -1286 3 716 743 264 72 4 chr12 17197013 17197291 -104060239 + L1MC1 LINE L1 4708 5004 -1142 3 716 463 302 0 33 chr12 17197292 17197412 -104060118 + PB1D10 SINE Alu 1 116 -1 3 716 390 181 56 8 chr12 17197412 17197664 -104059866 + GA-rich Low_complexity Low_complexity 1 264 0 3 716 446 282 40 17 chr12 17197687 17197860 -104059670 + L1MC1 LINE L1 5024 5200 -946 3 716 863 216 88 8 chr12 17197860 17198065 -104059465 + B3A SINE B2 1 216 0 3 716 203 204 0 36 chr12 17198068 17198078 -104059452 + (CATATA)n Simple_repeat Simple_repeat 4 12 0 3 716 405 0 0 0 chr12 17198078 17198123 -104059407 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 716 203 204 0 36 chr12 17198123 17198168 -104059362 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 3 716 575 244 30 0 chr12 17198196 17198364 -104059166 + L1MD LINE L1 5290 5462 -2533 3 716 617 212 17 0 chr12 17198365 17198483 -104059047 - RMER10B LTR ERVL -10 388 269 3 716 1300 284 94 9 chr12 17198747 17199302 -104058228 + L1MC1 LINE L1 5445 6046 -287 3 716 288 241 0 0 chr12 17199303 17199382 -104058148 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 716 474 315 66 83 chr12 17199384 17199699 -104057831 - B4A SINE B4 -18 274 1 3 716 573 254 70 33 chr12 17199713 17199986 -104057544 + L1MC1 LINE L1 6045 6327 -6 3 716 764 203 33 0 chr12 17199999 17200181 -104057349 - L1MA6 LINE L1 0 6300 6113 3 716 1236 79 0 0 chr12 17200609 17200966 -104056564 + (GGAGA)n Simple_repeat Simple_repeat 1 357 0 3 716 224 314 58 0 chr12 17201319 17201405 -104056125 - L3 LINE CR1 -54 4435 4345 3 716 259 311 27 0 chr12 17201460 17201534 -104055996 + MIRc SINE MIR 65 140 -128 3 716 1442 254 88 40 chr12 17201534 17201932 -104055598 - MTD LTR MaLR -2 417 1 3 716 279 293 95 65 chr12 17204324 17204492 -104053038 + LTR16D LTR ERVL 193 365 -310 3 716 281 251 92 10 chr12 17204575 17204711 -104052819 + LTR16D LTR ERVL 521 675 0 3 716 904 200 77 105 chr12 17205066 17205083 -104052447 - MTE2a LTR MaLR -30 349 335 3 716 830 191 249 0 chr12 17205083 17205256 -104052274 + B3 SINE B2 1 216 0 3 716 904 200 77 105 chr12 17205256 17205523 -104052007 - MTE2a LTR MaLR -45 334 73 3 716 608 254 122 0 chr12 17205523 17205712 -104051818 + B3 SINE B2 2 213 -3 3 716 261 140 0 0 chr12 17205724 17205781 -104051749 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 3 716 277 324 85 9 chr12 17205788 17205894 -104051636 - MTE2a LTR MaLR -302 119 6 3 716 1182 105 50 0 chr12 17205933 17206114 -104051416 + B2_Mm1t SINE B2 1 190 -3 3 716 422 248 38 9 chr12 17206518 17206624 -104050906 + PB1D10 SINE Alu 1 109 -8 3 716 232 204 127 18 chr12 17206656 17206711 -104050819 + ID4_ SINE ID 17 77 -6 3 716 617 270 80 88 chr12 17206934 17207339 -104050191 + MTD LTR MaLR 14 404 -15 3 716 552 208 8 16 chr12 17207863 17207990 -104049540 + ORR1D1 LTR MaLR 1 126 -248 3 716 524 343 0 0 chr12 17208054 17208194 -104049336 + B1F1 SINE Alu 1 140 -9 3 716 1219 221 37 19 chr12 17208268 17208536 -104048994 + B4 SINE B4 2 274 -18 3 716 423 0 0 0 chr12 17209034 17209081 -104048449 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 716 216 0 0 0 chr12 17210746 17210770 -104046760 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 716 340 286 117 28 chr12 17211282 17211599 -104045931 + L1MC LINE L1 4924 5268 -878 3 716 1867 240 58 58 chr12 17211600 17211708 -104045822 - RLTR20B3 LTR ERVK 0 534 435 3 716 1440 74 0 21 chr12 17211708 17211901 -104045629 - B2_Mm2 SINE B2 -5 190 2 4 716 1867 215 45 66 chr12 17211901 17212359 -104045171 - RLTR20B3 LTR ERVK -110 467 19 3 716 633 196 83 16 chr12 17212360 17212421 -104045109 - MYSERV16_I-int LTR ERVK -2 2324 2251 3 716 3524 30 0 0 chr12 17212421 17212817 -104044713 + MTA_Mm LTR MaLR 1 396 0 4 716 633 196 83 16 chr12 17212817 17212947 -104044583 - MYSERV16_I-int LTR ERVK -76 2250 2120 3 716 364 200 12 36 chr12 17212947 17213053 -104044477 - RLTR20B3 LTR ERVK -126 451 336 4 716 3110 117 18 2 chr12 17213053 17213541 -104043989 - MYSERV16_I-int LTR ERVK -261 2065 1570 3 716 1195 234 36 11 chr12 17213542 17213819 -104043711 + RLTR20A LTR ERVK 258 541 0 4 716 25 31 0 0 chr12 17213836 17213868 -104043662 + AT_rich Low_complexity Low_complexity 1 32 0 4 716 329 324 0 0 chr12 17213884 17213955 -104043575 - ID4 SINE ID -4 79 9 4 716 434 300 96 25 chr12 17214008 17214247 -104043283 + L1ME2 LINE L1 5344 5599 -580 4 716 435 190 0 176 chr12 17214303 17214448 -104043082 + B4 SINE B4 173 292 0 4 716 505 324 98 31 chr12 17214493 17214780 -104042750 + L1ME2 LINE L1 5593 5898 -266 4 716 542 216 92 71 chr12 17214788 17214972 -104042558 - B3A SINE B2 -7 188 1 4 716 521 319 58 31 chr12 17215035 17215226 -104042304 - B3 SINE B2 -19 197 2 4 716 207 338 12 12 chr12 17215761 17215842 -104041688 - MIRc SINE MIR -74 194 114 4 716 563 221 50 21 chr12 17215851 17216037 -104041493 + B3 SINE B2 1 194 -1 4 716 511 193 78 10 chr12 17217212 17217347 -104040183 + PB1D7 SINE Alu 11 149 0 4 716 387 299 25 83 chr12 17217969 17218046 -104039484 + B3A SINE B2 45 122 -76 4 716 3332 38 13 3 chr12 17218046 17218438 -104039092 - MTA_Mm LTR MaLR 0 396 1 4 716 9122 43 4 5 chr12 17218438 17219537 -104037993 - MTA_Mm-int LTR MaLR 0 1098 1 4 716 3334 46 3 3 chr12 17219537 17219927 -104037603 - MTA_Mm LTR MaLR -4 392 1 4 716 387 299 25 83 chr12 17219927 17220004 -104037526 + B3A SINE B2 123 190 -8 4 716 280 302 69 104 chr12 17220291 17220435 -104037095 - L2a LINE L2 -1 3425 3287 4 716 567 0 0 0 chr12 17220465 17220528 -104037002 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 716 1029 220 9 36 chr12 17220570 17220599 -104036931 + B3 SINE B2 1 29 -187 4 716 2125 112 55 9 chr12 17220599 17220942 -104036588 - RLTR15 LTR ERVK 0 359 1 4 716 1029 220 9 36 chr12 17220942 17221134 -104036396 + B3 SINE B2 30 216 0 4 716 404 223 60 2 chr12 17221156 17221249 -104036281 + B3A SINE B2 1 96 -99 4 716 1140 55 20 33 chr12 17221257 17221407 -104036123 + B1_Mus1 SINE Alu 1 148 0 4 716 213 65 0 0 chr12 17221407 17221438 -104036092 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4 716 2272 159 74 85 chr12 17221438 17221884 -104035646 - RLTR41 LTR ERV1 -5 441 1 4 716 244 369 35 18 chr12 17221884 17221997 -104035533 + B3A SINE B2 84 198 0 4 716 1170 132 16 6 chr12 17222028 17222211 -104035319 + B2_Mm2 SINE B2 2 186 -9 4 716 696 307 48 49 chr12 17222228 17222554 -104034976 - MTE2a LTR MaLR -78 341 10 4 716 696 234 56 38 chr12 17223314 17223474 -104034056 + RSINE1 SINE B4 3 165 0 4 716 326 233 43 65 chr12 17223836 17223928 -104033602 + PB1D10 SINE Alu 28 117 0 4 716 912 163 14 0 chr12 17223937 17224084 -104033446 + B1_Mur4 SINE Alu 2 150 0 4 716 446 237 42 8 chr12 17224089 17224208 -104033322 + L1M4b LINE L1 103 225 -7109 4 716 304 263 0 0 chr12 17224677 17224753 -104032777 + Lx9 LINE L1 6588 6663 -981 4 716 329 310 144 62 chr12 17224886 17225094 -104032436 + L1M4b LINE L1 2172 2383 -4719 4 716 342 0 0 0 chr12 17225094 17225132 -104032398 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 716 329 310 144 62 chr12 17225132 17225291 -104032239 + L1M4b LINE L1 2384 2569 -4533 4 716 704 264 72 28 chr12 17225405 17225654 -104031876 + L1M4b LINE L1 2684 2943 -4391 4 716 285 29 0 0 chr12 17225749 17225783 -104031747 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 716 774 163 4 0 chr12 17225783 17226041 -104031489 + (CA)n Simple_repeat Simple_repeat 1 259 0 4 716 1368 257 88 124 chr12 17226095 17226780 -104030750 + Lx8 LINE L1 6812 7471 -2 4 716 244 261 87 0 chr12 17226804 17226919 -104030611 + L1M4b LINE L1 3154 3278 -4056 4 716 276 153 23 12 chr12 17227221 17227307 -104030223 + CT-rich Low_complexity Low_complexity 1 87 0 4 716 784 200 138 16 chr12 17228471 17228659 -104028871 + B3 SINE B2 1 211 -5 4 716 272 284 161 0 chr12 17228669 17228750 -104028780 + L2b LINE L2 3272 3365 -10 4 716 301 293 51 45 chr12 17229251 17229408 -104028122 + MLT1A LTR MaLR 1 158 -216 4 716 515 284 7 15 chr12 17229419 17229555 -104027975 + B4A SINE B4 2 136 -156 4 716 401 123 0 0 chr12 17229563 17229620 -104027910 - URR1B DNA MER1_type 0 225 169 4 716 306 73 0 0 chr12 17229622 17229663 -104027867 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 716 287 387 19 9 chr12 17229667 17229774 -104027756 + MLT1A LTR MaLR 177 284 -90 4 716 200 316 0 17 chr12 17230531 17230589 -104026941 + GA-rich Low_complexity Low_complexity 6 62 0 4 716 1081 272 93 20 chr12 17231007 17231360 -104026170 + MTE2a LTR MaLR 1 379 0 4 716 582 262 53 60 chr12 17231394 17231544 -104025986 + MTEa LTR MaLR 3 151 -228 4 716 331 244 89 32 chr12 17231587 17231710 -104025820 + MTEa LTR MaLR 246 375 -4 4 716 374 259 5 0 chr12 17231711 17231826 -104025704 - MIRc SINE MIR -132 130 19 4 716 514 190 134 25 chr12 17233013 17233132 -104024398 - ID_B1 SINE B4 -1 223 92 4 716 300 53 0 0 chr12 17234567 17234605 -104022925 + (TGG)n Simple_repeat Simple_repeat 3 40 0 4 716 948 168 137 0 chr12 17235217 17235414 -104022116 - URR1B DNA MER1_type 0 225 2 4 716 587 250 9 0 chr12 17236499 17236615 -104020915 + B1F SINE Alu 28 144 -5 4 716 402 271 0 0 chr12 17236619 17236704 -104020826 + B3A SINE B2 1 85 -113 4 716 399 56 0 0 chr12 17236721 17236775 -104020755 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 716 217 65 87 0 chr12 17236780 17236826 -104020704 + (CAGAGA)n Simple_repeat Simple_repeat 4 53 0 4 716 24 0 0 0 chr12 17236849 17236873 -104020657 + AT_rich Low_complexity Low_complexity 1 24 0 4 716 783 104 0 0 chr12 17236889 17237004 -104020526 + (GGGA)n Simple_repeat Simple_repeat 4 118 0 4 716 224 265 0 0 chr12 17237466 17237515 -104020015 + G-rich Low_complexity Low_complexity 5 53 0 4 716 628 240 200 0 chr12 17238418 17238593 -104018937 + B4 SINE B4 1 210 -82 4 716 327 49 0 0 chr12 17238626 17238667 -104018863 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 716 252 0 0 0 chr12 17239041 17239069 -104018461 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 716 1103 53 53 0 chr12 17239073 17239206 -104018324 - B1_Mm SINE Alu -7 140 1 4 716 809 240 97 0 chr12 17239212 17239408 -104018122 - B3 SINE B2 0 216 2 4 716 285 29 0 0 chr12 17239560 17239594 -104017936 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 716 215 312 239 0 chr12 17239963 17240072 -104017458 + B4A SINE B4 85 219 -73 4 716 614 220 119 23 chr12 17240081 17240300 -104017230 + Lx9 LINE L1 7387 7626 -18 4 716 28 61 0 0 chr12 17240300 17240349 -104017181 + AT_rich Low_complexity Low_complexity 1 49 0 4 716 750 141 0 0 chr12 17240950 17241106 -104016424 + (TG)n Simple_repeat Simple_repeat 2 157 0 4 716 376 264 46 104 chr12 17241113 17241132 -104016398 - RSINE1 SINE B4 0 165 154 4 716 417 121 0 0 chr12 17241132 17241215 -104016315 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 716 376 264 46 104 chr12 17241215 17241368 -104016162 - RSINE1 SINE B4 -12 153 3 4 716 558 232 45 32 chr12 17241409 17241565 -104015965 + RSINE1 SINE B4 8 165 0 4 716 863 241 20 74 chr12 17241581 17241750 -104015780 + L1M4 LINE L1 5286 5437 -743 4 716 863 255 39 0 chr12 17241750 17241954 -104015576 + B3 SINE B2 1 212 -4 4 716 863 234 22 73 chr12 17241954 17242136 -104015394 + L1M4 LINE L1 5438 5616 -558 4 716 901 153 28 0 chr12 17242136 17242280 -104015250 + B1_Mur4 SINE Alu 3 150 0 4 716 713 270 17 119 chr12 17242280 17242341 -104015189 + L1M4 LINE L1 5602 5658 -513 4 716 869 195 0 0 chr12 17242347 17242511 -104015019 - Lx5 LINE L1 -969 6081 5918 4 716 246 224 34 17 chr12 17242511 17242570 -104014960 - MER31B LTR ERV1 -63 403 344 4 716 387 0 0 0 chr12 17242581 17242624 -104014906 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 716 410 283 42 0 chr12 17242980 17243124 -104014406 - L1M3 LINE L1 -345 5811 5661 4 716 4198 191 63 16 chr12 17243136 17244056 -104013474 - Lx5 LINE L1 -4 7046 6084 4 716 1158 115 0 22 chr12 17244057 17244235 -104013295 + L1_Mur2 LINE L1 5030 5203 -674 4 716 277 180 57 79 chr12 17244235 17244337 -104013193 + B1_Mur4 SINE Alu 19 120 0 4 716 822 251 75 10 chr12 17244901 17245102 -104012428 + ID_B1 SINE B4 1 214 -10 4 716 409 305 30 101 chr12 17245111 17245123 -104012407 + B4 SINE B4 77 167 -125 4 716 800 186 20 33 chr12 17245123 17245273 -104012257 + B1_Mur2 SINE Alu 1 148 -1 4 716 648 225 43 7 chr12 17245288 17245427 -104012103 + B1_Mur1 SINE Alu 1 144 -5 4 716 197 328 49 84 chr12 17245544 17245687 -104011843 - MIRm SINE MIR -92 184 47 4 716 213 39 0 0 chr12 17245950 17245976 -104011554 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 4 716 697 197 49 14 chr12 17246254 17246398 -104011132 + B1F SINE Alu 1 149 0 4 716 384 22 0 0 chr12 17246622 17246667 -104010863 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 716 447 19 0 0 chr12 17247394 17247446 -104010084 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 716 998 126 235 0 chr12 17247805 17247988 -104009542 - URR1A DNA MER1_type 0 226 1 4 716 748 249 40 33 chr12 17249347 17249574 -104007956 + ID_B1 SINE B4 64 292 0 4 716 2008 144 44 6 chr12 17249987 17250302 -104007228 - MTC LTR MaLR -3 418 92 4 716 2694 101 81 44 chr12 17250302 17250760 -104006770 + IAPLTR2_Mm LTR ERVK 1 475 0 4 716 4400 47 6 119 chr12 17250770 17251478 -104006052 + IAPEz-int LTR ERVK 35 662 -5819 4 716 434 66 0 32 chr12 17251478 17251541 -104005989 + IAPEz-int LTR ERVK 1359 1419 -5062 4 716 1740 106 0 0 chr12 17251546 17251792 -104005738 + IAPEz-int LTR ERVK 2252 2497 -5183 4 716 887 88 24 0 chr12 17251787 17251912 -104005618 + IAPEz-int LTR ERVK 4783 4910 -2770 4 716 25579 14 4 0 chr12 17251912 17254857 -104002673 + IAPEz-int LTR ERVK 3525 6481 0 4 716 2732 104 66 51 chr12 17254857 17255325 -104002205 + IAPLTR2_Mm LTR ERVK 1 475 0 4 716 681 124 0 0 chr12 17255325 17255422 -104002108 - MTC LTR MaLR -324 97 1 4 716 6756 139 83 12 chr12 17255422 17256596 -104000934 - MTC-int LTR MaLR 0 1258 2 4 716 2175 174 47 5 chr12 17256599 17256985 -104000545 - MTC LTR MaLR -8 413 12 4 716 339 279 46 11 chr12 17257026 17257113 -104000417 + RSINE1 SINE B4 28 117 -48 4 716 318 309 27 0 chr12 17257722 17257832 -103999698 + MIRb SINE MIR 14 126 -142 4 716 1048 243 190 28 chr12 17257844 17258170 -103999360 - MTE2b LTR MaLR 0 379 1 4 716 504 0 0 0 chr12 17258576 17258632 -103998898 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 716 228 214 239 14 chr12 17258667 17258738 -103998792 - PB1 SINE Alu 0 127 41 4 716 201 129 0 0 chr12 17259761 17259792 -103997738 + (G)n Simple_repeat Simple_repeat 1 31 0 4 716 640 270 25 70 chr12 17259900 17260099 -103997431 + LTR41 LTR ERVL 5 194 -574 4 716 423 38 0 0 chr12 17261652 17261705 -103995825 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 716 432 111 0 0 chr12 17261705 17261786 -103995744 + (GA)n Simple_repeat Simple_repeat 1 81 0 5 716 684 275 66 0 chr12 17263282 17263464 -103994066 + B4 SINE B4 1 194 -98 5 716 475 250 77 49 chr12 17263557 17263700 -103993830 + RSINE1 SINE B4 3 149 -16 5 716 543 31 0 0 chr12 17263701 17263766 -103993764 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 716 237 108 0 0 chr12 17263768 17263805 -103993725 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 5 716 696 200 184 5 chr12 17264062 17264258 -103993272 - Lx4B LINE L1 -119 6939 6709 5 716 194 333 0 0 chr12 17264291 17264345 -103993185 - L2c LINE L2 -252 3135 3082 5 716 281 236 9 0 chr12 17264359 17264465 -103993065 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 716 469 304 108 50 chr12 17264468 17264492 -103993038 - B4 SINE B4 0 292 257 5 716 419 344 6 12 chr12 17264492 17264519 -103993011 - RSINE1 SINE B4 0 165 139 5 716 336 24 0 0 chr12 17264519 17264560 -103992970 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 716 419 344 6 12 chr12 17264560 17264697 -103992833 - RSINE1 SINE B4 -27 138 2 5 716 469 304 108 50 chr12 17264697 17264714 -103992816 - B4 SINE B4 -36 256 240 5 716 573 205 173 0 chr12 17264714 17264841 -103992689 - B1_Mur2 SINE Alu 0 149 1 5 716 1113 204 10 2 chr12 17264841 17265058 -103992472 - ID_B1 SINE B4 -53 239 18 5 716 1278 232 95 23 chr12 17265363 17265712 -103991818 - MTEb LTR MaLR 0 379 6 5 716 342 0 0 0 chr12 17265713 17265751 -103991779 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 716 333 0 0 0 chr12 17265751 17265787 -103991743 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 716 413 288 9 26 chr12 17265856 17265970 -103991560 + PB1D7 SINE Alu 1 112 -8 5 716 892 270 9 91 chr12 17266104 17266422 -103991108 + B4A SINE B4 1 292 0 5 716 2205 138 10 82 chr12 17266431 17266628 -103990902 + ORR1B1 LTR MaLR 22 219 -175 5 716 1177 49 14 0 chr12 17266628 17266770 -103990760 + B1_Mus2 SINE Alu 2 145 -2 5 716 2205 138 10 82 chr12 17266770 17266974 -103990556 + ORR1B1 LTR MaLR 220 394 0 5 716 235 296 91 50 chr12 17267085 17267250 -103990280 - MIR SINE MIR -72 196 23 5 716 2313 157 5 3 chr12 17267504 17267874 -103989656 - ORR1C1 LTR MaLR -7 371 1 5 716 2081 132 12 58 chr12 17268156 17268501 -103989029 - ORR1A4 LTR MaLR 0 329 1 5 716 1218 41 14 0 chr12 17268638 17268776 -103988754 + B1_Mus2 SINE Alu 1 140 -7 5 716 197 33 33 0 chr12 17268776 17268806 -103988724 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 716 444 300 31 14 chr12 17268927 17269099 -103988431 + MTE2a LTR MaLR 37 211 -208 5 716 893 137 26 0 chr12 17269129 17269282 -103988248 - RLTR40 LTR ERVK -275 542 386 5 716 224 323 0 50 chr12 17269304 17269327 -103988203 - BC1_Mm scRNA scRNA -51 101 6 5 716 326 260 0 13 chr12 17269327 17269405 -103988125 - ID SINE ID -142 82 6 5 716 213 254 18 0 chr12 17269449 17269504 -103988026 + L2b LINE L2 3320 3375 0 5 716 546 339 80 19 chr12 17269618 17269880 -103987650 - MLT1I LTR MaLR -6 405 128 5 716 643 296 113 55 chr12 17269905 17270420 -103987110 + L1MB3 LINE L1 5528 6069 -114 5 716 281 263 92 0 chr12 17270428 17270504 -103987026 + ID4 SINE ID 1 83 0 5 716 1255 231 114 35 chr12 17270743 17271128 -103986402 - MTD LTR MaLR -13 406 1 5 716 929 250 19 19 chr12 17272062 17272182 -103985348 - ID_B1 SINE B4 -10 214 98 5 716 2053 161 105 23 chr12 17272182 17272571 -103984959 - MTC LTR MaLR 0 421 1 5 716 929 250 19 19 chr12 17272571 17272662 -103984868 - ID_B1 SINE B4 -127 97 3 5 716 195 139 0 0 chr12 17273161 17273197 -103984333 + (CCCCG)n Simple_repeat Simple_repeat 1 36 0 5 716 1229 47 0 0 chr12 17274967 17275115 -103982415 - B1_Mus1 SINE Alu 0 148 1 5 716 269 244 0 0 chr12 17275146 17275191 -103982339 + PB1D9 SINE Alu 3 47 -73 5 716 259 274 23 100 chr12 17275215 17275345 -103982185 - MER33 DNA MER1_type 0 324 205 5 716 325 220 204 7 chr12 17275481 17275623 -103981907 - MER33 DNA MER1_type -135 189 20 5 716 238 259 0 0 chr12 17276120 17276178 -103981352 - Lx8 LINE L1 -4 7469 7412 5 716 652 329 85 44 chr12 17276293 17276563 -103980967 - B4A SINE B4 0 292 12 5 716 1563 43 11 0 chr12 17276609 17276795 -103980735 + B2_Mm2 SINE B2 1 188 -7 5 716 801 166 43 0 chr12 17277395 17277534 -103979996 - B1_Mur1 SINE Alu -1 148 4 5 716 303 221 31 47 chr12 17277538 17277638 -103979892 - B1F SINE Alu -11 139 42 5 716 241 383 60 45 chr12 17277552 17277686 -103979844 - ID_B1 SINE B4 -52 172 37 5 716 306 226 105 105 chr12 17277724 17277838 -103979692 + RSINE1 SINE B4 2 115 -177 5 716 1091 202 252 7 chr12 17278055 17278349 -103979181 - ORR1D2 LTR MaLR -4 366 1 5 716 449 328 0 31 chr12 17278366 17278495 -103979035 - PB1 SINE Alu 0 127 3 5 716 286 333 57 0 chr12 17279031 17279136 -103978394 + PB1D10 SINE Alu 1 111 -6 5 716 225 281 0 34 chr12 17279146 17279205 -103978325 + ID_B1 SINE B4 114 170 -54 5 716 226 197 197 70 chr12 17279429 17279441 -103978089 - ID SINE ID -135 89 10 5 716 238 186 220 0 chr12 17279441 17279500 -103978030 - ID4_ SINE ID -2 81 10 5 716 365 319 55 37 chr12 17279573 17279791 -103977739 - Charlie4 DNA MER1_type -1676 285 64 5 716 273 247 116 12 chr12 17280377 17280463 -103977067 - B1F2 SINE Alu -54 95 1 5 716 221 184 0 50 chr12 17281521 17281601 -103975929 + (TTTAA)n Simple_repeat Simple_repeat 5 80 0 5 716 462 255 41 0 chr12 17282598 17282696 -103974834 - RSINE1 SINE B4 -27 138 37 5 716 302 338 63 25 chr12 17282701 17282859 -103974671 + MER58A DNA MER1_type 46 209 -15 5 716 354 259 24 101 chr12 17284154 17284189 -103973341 - PB1D10 SINE Alu -3 114 48 5 716 400 203 0 0 chr12 17284189 17284258 -103973272 - ID_B1 SINE B4 -57 167 99 5 716 354 259 24 101 chr12 17284258 17284280 -103973250 - PB1D10 SINE Alu -3 47 1 5 716 310 277 52 26 chr12 17286011 17286126 -103971404 - ID_B1 SINE B4 -101 123 6 5 716 302 255 141 10 chr12 17286141 17286240 -103971290 - PB1D7 SINE Alu -8 112 1 5 716 391 281 45 2 chr12 17286585 17286702 -103970828 - PB1D9 SINE Alu -23 126 10 5 716 1116 81 27 1 chr12 17288620 17288795 -103968735 - B2_Mm2 SINE B2 -10 183 1 5 716 911 99 35 21 chr12 17288859 17289003 -103968527 - B1_Mus2 SINE Alu 0 147 2 5 716 29 0 0 0 chr12 17289003 17289032 -103968498 + AT_rich Low_complexity Low_complexity 1 29 0 5 716 559 210 285 6 chr12 17290263 17290421 -103967109 + B3 SINE B2 2 203 -13 5 716 401 230 18 99 chr12 17290457 17290568 -103966962 + PB1D7 SINE Alu 10 111 -9 5 716 765 232 72 22 chr12 17292139 17292320 -103965210 + B3A SINE B2 3 192 -6 5 716 3043 58 2 0 chr12 17292392 17292789 -103964741 - L1_Mus1 LINE L1 -276 6291 5894 5 716 1386 52 0 0 chr12 17292789 17292962 -103964568 + L1_Mus1 LINE L1 6303 6475 -92 5 716 1044 62 34 2 chr12 17292962 17293126 -103964404 + L1_Mus1 LINE L1 6415 6584 0 5 716 209 213 0 0 chr12 17293132 17293179 -103964351 + A-rich Low_complexity Low_complexity 1 47 0 5 716 303 28 0 0 chr12 17296994 17297030 -103960500 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 716 903 226 21 21 chr12 17297060 17297254 -103960276 + ID_B1 SINE B4 31 224 0 5 716 325 319 21 14 chr12 17299453 17299593 -103957937 + (GGATG)n Simple_repeat Simple_repeat 1 141 0 5 716 254 169 34 0 chr12 17299602 17299661 -103957869 + (GGGTG)n Simple_repeat Simple_repeat 4 64 0 5 716 1671 162 90 85 chr12 17299971 17300173 -103957357 + ORR1C2 LTR MaLR 5 196 -188 5 716 420 77 0 0 chr12 17300173 17300238 -103957292 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 716 288 53 0 0 chr12 17300238 17300276 -103957254 + (CCTG)n Simple_repeat Simple_repeat 2 39 0 5 716 1671 162 90 85 chr12 17300276 17300450 -103957080 + ORR1C2 LTR MaLR 197 383 -1 5 717 1669 36 0 0 chr12 17302281 17302474 -103955056 - B2_Mm1a SINE B2 0 193 1 5 717 945 107 64 0 chr12 17302742 17302882 -103954648 - B1_Mur4 SINE Alu -1 149 1 5 717 688 260 13 7 chr12 17302922 17303077 -103954453 - RSINE1 SINE B4 -5 160 5 5 717 1226 49 0 0 chr12 17303525 17303669 -103953861 + B1_Mus2 SINE Alu 1 144 -3 5 717 369 0 0 0 chr12 17303669 17303710 -103953820 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 717 424 240 176 32 chr12 17304727 17304852 -103952678 + ID_B1 SINE B4 81 223 -1 5 717 1396 149 22 31 chr12 17305591 17305819 -103951711 + URR1A DNA MER1_type 1 226 0 5 717 604 232 22 7 chr12 17307311 17307450 -103950080 + B1F SINE Alu 1 141 -8 5 717 218 286 71 0 chr12 17307469 17307525 -103950005 + ID4_ SINE ID 21 80 -3 5 717 610 169 186 0 chr12 17308853 17308971 -103948559 - B1_Mur1 SINE Alu -9 140 1 5 717 1000 232 64 95 chr12 17308971 17309361 -103948169 + MTE2a LTR MaLR 2 379 0 5 717 747 233 0 14 chr12 17309454 17309602 -103947928 - B1_Mur1 SINE Alu -2 147 2 5 717 295 240 8 119 chr12 17309667 17309682 -103947848 - B1F1 SINE Alu -34 115 102 5 717 675 0 0 0 chr12 17309682 17309757 -103947773 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 717 410 240 30 16 chr12 17309757 17309859 -103947671 - PB1 SINE Alu -20 107 9 5 717 309 276 54 101 chr12 17309859 17309906 -103947624 - ID_B1 SINE B4 -45 179 38 5 717 231 329 84 62 chr12 17311269 17311339 -103946191 + MT2B LTR ERVL 82 155 -446 5 717 623 276 0 0 chr12 17311339 17311466 -103946064 + B1F SINE Alu 2 128 -21 5 717 195 190 39 192 chr12 17311667 17311745 -103945785 - L4 LINE RTE -1256 773 708 5 717 246 312 86 26 chr12 17312611 17312743 -103944787 - MIRc SINE MIR -91 177 36 5 717 227 299 22 44 chr12 17312861 17312952 -103944578 + MER103 DNA DNA 20 108 -58 5 717 228 200 0 127 chr12 17313239 17313302 -103944228 - ID2 SINE ID 0 83 29 5 717 632 255 136 35 chr12 17313554 17313753 -103943777 + ID_B1 SINE B4 5 223 -1 5 717 342 0 0 0 chr12 17314575 17314613 -103942917 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 717 545 294 0 0 chr12 17314627 17314763 -103942767 - ID_B1 SINE B4 -8 216 81 6 717 746 304 37 20 chr12 17315250 17315603 -103941927 + L1ME4a LINE L1 5559 5917 -207 6 717 222 192 0 0 chr12 17315760 17315812 -103941718 + CT-rich Low_complexity Low_complexity 1 52 0 6 717 908 242 81 0 chr12 17315824 17316022 -103941508 - ID_B1 SINE B4 -10 214 1 6 717 320 222 0 0 chr12 17316234 17316288 -103941242 + ID SINE ID 29 82 -142 6 717 281 277 12 0 chr12 17316288 17316317 -103941213 + BC1_Mm scRNA scRNA 28 111 -41 6 717 722 221 149 21 chr12 17316323 17316517 -103941013 + ID_B1 SINE B4 2 220 -4 6 717 754 150 33 0 chr12 17316526 17316646 -103940884 + B1_Mur1 SINE Alu 6 129 -20 6 717 180 282 0 0 chr12 17316870 17316909 -103940621 - MIR SINE MIR -222 40 2 6 717 1206 68 0 0 chr12 17317351 17317497 -103940033 + B1_Mm SINE Alu 1 146 -1 6 717 263 28 0 27 chr12 17317498 17317511 -103940019 + (GAA)n Simple_repeat Simple_repeat 3 15 0 6 717 1368 67 0 0 chr12 17317511 17317691 -103939839 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 717 263 28 0 27 chr12 17317691 17317714 -103939816 + (GAA)n Simple_repeat Simple_repeat 1 23 0 6 717 201 296 239 0 chr12 17317787 17317875 -103939655 - L2a LINE L2 -17 3409 3301 6 717 211 163 70 0 chr12 17318018 17318061 -103939469 + L2b LINE L2 3329 3374 -1 6 717 666 0 0 0 chr12 17318500 17318574 -103938956 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 717 594 0 0 0 chr12 17318574 17318639 -103938891 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 717 572 266 62 7 chr12 17319146 17319290 -103938240 + RSINE1 SINE B4 14 165 0 6 717 228 260 12 72 chr12 17319229 17319312 -103938218 + B3A SINE B2 121 198 0 6 717 255 303 0 0 chr12 17319403 17319479 -103938051 + L1ME3 LINE L1 6067 6142 -20 6 717 311 149 21 0 chr12 17319484 17319531 -103937999 - HAL1-3A_ME LINE L1 -835 2023 1976 6 717 200 301 27 14 chr12 17319531 17319605 -103937925 + (CATG)n Simple_repeat Simple_repeat 3 77 0 6 717 230 245 19 0 chr12 17319550 17319603 -103937927 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 717 815 220 29 34 chr12 17319664 17319855 -103937675 - B4A SINE B4 -16 276 85 6 717 273 109 0 0 chr12 17319952 17319998 -103937532 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 717 963 231 10 49 chr12 17320136 17320341 -103937189 - B3A SINE B2 0 198 2 6 717 1037 97 14 0 chr12 17320356 17320501 -103937029 - B1_Mus2 SINE Alu 0 147 1 6 717 576 42 0 0 chr12 17320598 17320669 -103936861 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 717 625 271 77 50 chr12 17321195 17321416 -103936114 + B4 SINE B4 1 227 -65 6 717 306 0 0 0 chr12 17321450 17321484 -103936046 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 717 369 0 0 0 chr12 17321484 17321524 -103936006 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 717 341 293 22 43 chr12 17322215 17322354 -103935176 + B1F SINE Alu 1 136 -13 6 717 587 208 0 9 chr12 17322597 17322704 -103934826 + ID_B1 SINE B4 118 223 -1 6 717 414 0 0 0 chr12 17323257 17323303 -103934227 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 717 1416 60 5 21 chr12 17323392 17323579 -103933951 + B2_Mm1a SINE B2 2 185 -8 6 717 684 36 0 0 chr12 17323693 17323776 -103933754 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 6 717 335 290 9 78 chr12 17323781 17323897 -103933633 + PB1D10 SINE Alu 10 117 0 6 717 771 226 27 0 chr12 17323900 17324046 -103933484 + B3A SINE B2 1 150 -48 6 717 444 82 0 0 chr12 17324051 17324112 -103933418 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 717 670 126 185 0 chr12 17324330 17324449 -103933081 + B1_Mur3 SINE Alu 2 142 -7 6 717 322 226 269 0 chr12 17324572 17324665 -103932865 + RSINE1 SINE B4 6 123 -42 6 717 378 0 0 0 chr12 17325649 17325691 -103931839 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 717 675 132 207 0 chr12 17326576 17326697 -103930833 - B1_Mus1 SINE Alu -1 147 2 6 717 279 0 0 0 chr12 17326957 17326988 -103930542 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 6 717 426 288 82 55 chr12 17327094 17327268 -103930262 - ID_B1 SINE B4 -50 242 70 6 717 873 150 6 70 chr12 17327279 17327437 -103930093 + B1_Mur3 SINE Alu 2 149 0 6 717 419 120 63 83 chr12 17327467 17327574 -103929956 + B1_Mm SINE Alu 2 146 -1 6 717 257 235 0 0 chr12 17327575 17327643 -103929887 + A-rich Low_complexity Low_complexity 1 68 0 6 717 484 266 18 0 chr12 17327643 17327756 -103929774 - PB1 SINE Alu -10 117 3 6 717 232 25 24 48 chr12 17327948 17327990 -103929540 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 6 717 374 185 0 12 chr12 17328111 17328193 -103929337 + GA-rich Low_complexity Low_complexity 4 84 0 6 717 835 301 69 62 chr12 17328677 17328953 -103928577 - B4A SINE B4 0 292 15 6 717 359 178 139 4 chr12 17329132 17329226 -103928304 - B4A SINE B4 -158 134 32 6 717 459 265 83 0 chr12 17329252 17329384 -103928146 - B1F SINE Alu -5 144 2 6 717 1004 174 75 21 chr12 17329430 17329618 -103927912 + B3 SINE B2 12 209 -7 6 717 310 224 26 13 chr12 17332160 17332237 -103925293 + ID4_ SINE ID 4 81 -2 6 717 616 219 12 0 chr12 17332326 17332490 -103925040 + (TAGA)n Simple_repeat Simple_repeat 1 166 0 6 717 625 246 0 0 chr12 17332560 17332670 -103924860 + RSINE1 SINE B4 28 137 -28 6 717 543 31 0 0 chr12 17332690 17332755 -103924775 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 717 357 253 32 84 chr12 17332755 17332850 -103924680 + MT2B LTR ERVL 168 257 -344 6 717 852 95 35 0 chr12 17332774 17332890 -103924640 + B1_Mus1 SINE Alu 24 143 -5 6 717 815 78 9 0 chr12 17332895 17333011 -103924519 + (GAAAA)n Simple_repeat Simple_repeat 2 118 0 6 717 762 200 7 0 chr12 17333072 17333207 -103924323 + B1_Mur1 SINE Alu 1 136 -13 6 717 510 46 0 0 chr12 17333208 17333273 -103924257 + (CATA)n Simple_repeat Simple_repeat 2 66 0 6 717 1193 35 7 0 chr12 17334174 17334319 -103923211 + B1_Mus2 SINE Alu 1 146 -1 6 717 466 231 260 0 chr12 17334623 17334792 -103922738 - B3 SINE B2 -2 214 2 6 717 292 252 135 48 chr12 17334937 17335041 -103922489 + PB1D10 SINE Alu 5 117 0 6 717 459 0 0 0 chr12 17335193 17335244 -103922286 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 717 802 294 68 42 chr12 17335268 17335531 -103921999 - B4 SINE B4 -22 270 1 6 717 494 217 131 8 chr12 17336748 17336878 -103920652 - B1F2 SINE Alu -1 148 3 6 717 388 203 14 0 chr12 17336898 17336972 -103920558 - ID2 SINE ID -8 75 1 6 717 269 302 66 25 chr12 17337245 17337367 -103920163 - MIRm SINE MIR -116 160 34 6 717 852 150 0 0 chr12 17337384 17337524 -103920006 + B1_Mus1 SINE Alu 8 147 -1 6 717 228 182 0 0 chr12 17337524 17337568 -103919962 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 6 717 467 343 7 0 chr12 17337780 17337923 -103919607 - B3A SINE B2 -24 174 31 6 717 185 0 0 39 chr12 17337923 17337949 -103919581 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 6 717 234 227 0 0 chr12 17337949 17337993 -103919537 - B1_Mm SINE Alu -12 135 92 6 717 273 289 0 82 chr12 17338044 17338142 -103919388 + ORR1E LTR MaLR 3 92 -287 6 717 388 270 105 36 chr12 17338186 17338453 -103919077 + ORR1E LTR MaLR 67 376 -3 6 717 675 283 143 10 chr12 17338457 17338764 -103918766 + ORR1E-int LTR MaLR 1 348 -1232 6 717 349 307 82 93 chr12 17338769 17338952 -103918578 + ID_B1 SINE B4 5 185 -39 6 717 334 256 21 32 chr12 17338938 17339031 -103918499 - B3A SINE B2 -37 161 70 6 717 536 229 48 35 chr12 17339089 17339234 -103918296 + RSINE1 SINE B4 5 151 -14 6 717 831 212 31 16 chr12 17339305 17339497 -103918033 - B2_Mm2 SINE B2 0 195 1 6 717 337 217 196 65 chr12 17339521 17339674 -103917856 + ORR1E-int LTR MaLR 483 655 -925 6 717 1286 311 104 26 chr12 17339710 17340328 -103917202 + ORR1E-int LTR MaLR 752 1417 -163 6 717 302 197 192 26 chr12 17340412 17340490 -103917040 - RSINE1 SINE B4 -33 132 42 6 717 240 35 0 0 chr12 17340653 17340682 -103916848 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 717 189 0 0 0 chr12 17340862 17340883 -103916647 + (TC)n Simple_repeat Simple_repeat 1 21 0 6 717 497 44 0 14 chr12 17340897 17340966 -103916564 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 717 574 321 55 18 chr12 17340992 17341211 -103916319 - B4A SINE B4 -35 257 31 6 717 486 149 64 13 chr12 17341607 17341763 -103915767 + CT-rich Low_complexity Low_complexity 1 164 0 6 717 373 245 67 13 chr12 17341872 17342021 -103915509 + L1M4 LINE L1 4999 5155 -991 6 717 656 224 153 11 chr12 17342048 17342224 -103915306 + B4A SINE B4 36 236 -56 6 717 927 121 266 5 chr12 17342478 17342685 -103914845 + MTC LTR MaLR 34 294 -127 6 717 2465 118 13 3 chr12 17342715 17343097 -103914433 + ORR1B1 LTR MaLR 1 386 -8 6 717 451 186 0 11 chr12 17343081 17343168 -103914362 + MTC LTR MaLR 336 421 0 6 717 388 341 85 0 chr12 17343698 17343862 -103913668 - B4A SINE B4 0 292 115 6 717 519 147 0 50 chr12 17344144 17344244 -103913286 + PB1D10 SINE Alu 23 117 0 6 717 229 286 0 45 chr12 17344284 17344350 -103913180 + ID2 SINE ID 2 64 -19 6 717 432 0 0 0 chr12 17344355 17344403 -103913127 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 717 1196 68 0 0 chr12 17344434 17344580 -103912950 - B1_Mm SINE Alu 0 147 2 6 717 286 299 45 6 chr12 17345221 17345399 -103912131 + L2 LINE L2 824 1008 -2411 6 717 254 328 138 1 chr12 17345689 17345852 -103911678 - L2a LINE L2 0 3426 3192 6 717 254 185 74 0 chr12 17345917 17345971 -103911559 - ORR1E LTR MaLR -82 296 239 6 717 928 206 33 23 chr12 17346028 17346242 -103911288 - B3 SINE B2 0 216 1 7 717 368 239 94 29 chr12 17346327 17346465 -103911065 - ORR1E LTR MaLR -212 147 1 6 717 316 273 0 25 chr12 17346469 17346548 -103910982 - ID_B1 SINE B4 -71 153 77 7 717 294 50 0 0 chr12 17346609 17346649 -103910881 + (T)n Simple_repeat Simple_repeat 1 40 0 7 717 601 199 88 0 chr12 17346649 17346785 -103910745 - B1_Mur4 SINE Alu 0 150 3 7 717 634 276 34 68 chr12 17346815 17346894 -103910636 - B3 SINE B2 -10 206 130 7 717 5321 2 0 0 chr12 17346894 17347472 -103910058 + L1Md_A LINE L1 6005 6582 0 7 717 634 276 34 68 chr12 17347472 17347598 -103909932 - B3 SINE B2 -87 129 8 7 717 574 285 0 0 chr12 17347611 17347748 -103909782 - ID_B1 SINE B4 -4 220 84 7 717 431 264 31 16 chr12 17347894 17348021 -103909509 - RSINE1 SINE B4 -34 131 3 7 717 249 317 33 0 chr12 17348214 17348274 -103909256 - ID4 SINE ID 0 83 22 7 717 244 303 61 0 chr12 17348220 17348286 -103909244 - ID SINE ID -146 78 9 7 717 302 261 33 60 chr12 17348298 17348435 -103909095 - B1F SINE Alu -8 141 16 7 717 36 0 0 0 chr12 17348461 17348497 -103909033 + AT_rich Low_complexity Low_complexity 1 36 0 7 717 324 0 0 0 chr12 17348515 17348551 -103908979 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 717 919 168 0 0 chr12 17348552 17348689 -103908841 - B1_Mus2 SINE Alu -10 137 1 7 717 524 200 28 56 chr12 17348691 17348834 -103908696 - B3A SINE B2 0 198 60 7 717 363 299 0 0 chr12 17348866 17348953 -103908577 - PB1D10 SINE Alu -30 87 1 7 717 276 250 30 89 chr12 17348867 17348968 -103908562 - MT2B2 LTR ERVL -340 244 150 7 717 379 299 8 112 chr12 17349037 17349278 -103908252 - B3 SINE B2 0 216 1 7 717 354 153 13 77 chr12 17349647 17349725 -103907805 + RLTR42-int LTR ERVK 1258 1330 -4192 7 717 507 288 59 11 chr12 17349756 17349942 -103907588 + B3A SINE B2 3 197 -1 7 717 408 259 94 8 chr12 17350616 17350733 -103906797 - RSINE1 SINE B4 -36 129 3 7 717 294 253 11 75 chr12 17350754 17350765 -103906765 + MT2B LTR ERVL 153 157 -444 7 717 450 214 29 2 chr12 17350765 17350868 -103906662 + B1_Mus2 SINE Alu 1 101 -16 7 717 192 344 16 0 chr12 17350949 17351010 -103906520 - MIR SINE MIR -179 83 22 7 717 299 216 27 13 chr12 17351485 17351560 -103905970 - ID2 SINE ID -4 79 4 7 717 299 267 46 50 chr12 17351678 17351860 -103905670 - ORR1E LTR MaLR -6 373 197 7 717 440 309 44 0 chr12 17351999 17352135 -103905395 - RSINE1 SINE B4 -8 157 16 7 717 246 256 47 82 chr12 17352202 17352287 -103905243 - ORR1E LTR MaLR -274 85 4 7 717 623 248 89 110 chr12 17352288 17352348 -103905182 + MLT1A0 LTR MaLR 87 135 -230 7 717 1044 120 0 13 chr12 17352348 17352500 -103905030 - B1_Mur4 SINE Alu 0 150 1 7 717 623 248 89 110 chr12 17352500 17352720 -103904810 + MLT1A0 LTR MaLR 136 361 -4 7 717 21 0 0 0 chr12 17352936 17352957 -103904573 + AT_rich Low_complexity Low_complexity 1 21 0 7 717 736 196 101 53 chr12 17353031 17353220 -103904310 + B3A SINE B2 1 198 0 7 717 624 282 34 0 chr12 17353678 17353827 -103903703 - RSINE1 SINE B4 0 165 12 7 717 371 287 65 0 chr12 17353827 17353935 -103903595 - ID_B1 SINE B4 -30 194 80 7 717 189 74 0 0 chr12 17354258 17354285 -103903245 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 717 1945 129 135 3 chr12 17355489 17355853 -103901677 + MTC LTR MaLR 2 413 -8 7 717 232 239 239 0 chr12 17356176 17356268 -103901262 - MER20 DNA MER1_type -9 210 97 7 717 299 267 30 91 chr12 17356526 17356625 -103900905 + PB1D10 SINE Alu 18 110 -10 7 717 1148 117 45 0 chr12 17356810 17356989 -103900541 + B2_Mm2 SINE B2 2 188 -7 7 717 697 198 0 13 chr12 17356996 17357155 -103900375 + B2_Mm2 SINE B2 20 176 -19 7 717 615 296 160 6 chr12 17357522 17357859 -103899671 - LTR40c LTR ERVL -31 434 46 7 717 316 262 12 0 chr12 17358427 17358507 -103899023 - ID4_ SINE ID -1 82 2 7 717 227 342 58 68 chr12 17358931 17359138 -103898392 - MTEa LTR MaLR -6 373 169 7 717 360 261 66 15 chr12 17359617 17359753 -103897777 - L1ME2z LINE L1 0 6444 6302 7 717 340 253 77 0 chr12 17359816 17359907 -103897623 - PB1D10 SINE Alu -19 98 1 7 717 569 208 208 0 chr12 17360048 17360226 -103897304 - B3 SINE B2 -1 215 1 7 717 626 174 58 43 chr12 17360390 17360528 -103897002 - B1_Mur2 SINE Alu 0 149 10 7 717 856 128 7 7 chr12 17361059 17361201 -103896329 + B1_Mus1 SINE Alu 6 147 -1 7 717 322 239 97 11 chr12 17361434 17361527 -103896003 + RSINE1 SINE B4 2 102 -63 7 717 833 180 93 26 chr12 17362474 17362668 -103894862 - B3 SINE B2 -9 207 1 7 717 210 118 0 0 chr12 17363049 17363083 -103894447 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 7 717 616 236 27 34 chr12 17363084 17363233 -103894297 - B1_Mur4 SINE Alu -1 149 2 7 717 826 124 59 0 chr12 17363485 17363646 -103893884 + B2_Mm2 SINE B2 2 173 -20 7 717 498 206 181 68 chr12 17363788 17363965 -103893565 - B3A SINE B2 0 198 2 7 717 297 75 0 0 chr12 17365209 17365249 -103892281 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 717 1224 75 92 0 chr12 17365272 17365445 -103892085 - B2_Mm2 SINE B2 -5 190 2 7 717 346 187 13 26 chr12 17365575 17365652 -103891878 + ID2 SINE ID 2 77 -6 7 717 449 210 60 0 chr12 17365690 17365790 -103891740 - B3A SINE B2 -76 122 17 7 717 599 179 9 0 chr12 17366205 17366311 -103891219 + B1_Mur1 SINE Alu 24 130 -19 7 717 218 179 0 0 chr12 17366311 17366350 -103891180 + PB1D9 SINE Alu 74 112 -8 7 717 480 277 14 42 chr12 17366463 17366606 -103890924 - B1_Mur2 SINE Alu -6 143 5 7 717 454 266 42 7 chr12 17366773 17366917 -103890613 - B1F1 SINE Alu 0 149 1 7 717 248 118 0 0 chr12 17367320 17367354 -103890176 + MurSatRep1 Unknown Unknown 227 260 -1877 7 717 182 152 0 0 chr12 17367509 17367542 -103889988 - MIR SINE MIR -73 189 157 7 717 555 266 70 0 chr12 17368052 17368195 -103889335 - RSINE1 SINE B4 -1 164 12 7 717 600 259 92 44 chr12 17368218 17368424 -103889106 + B3A SINE B2 1 216 0 7 717 272 294 12 0 chr12 17368632 17368717 -103888813 - L1MC4 LINE L1 -145 7897 7812 7 717 219 358 97 0 chr12 17368720 17368854 -103888676 + B1_Mm SINE Alu 1 147 0 7 717 327 319 17 26 chr12 17368740 17368856 -103888674 + ID_B1 SINE B4 109 223 -1 7 717 409 230 42 84 chr12 17368838 17368863 -103888667 + B4 SINE B4 65 223 -69 7 717 851 86 21 14 chr12 17368863 17369004 -103888526 + B1_Mur3 SINE Alu 6 147 -2 7 717 325 314 29 0 chr12 17369056 17369158 -103888372 + PB1 SINE Alu 22 126 -1 7 717 595 232 47 47 chr12 17370561 17370751 -103886779 - B3A SINE B2 -4 194 5 7 717 505 208 45 23 chr12 17370950 17371083 -103886447 - B1_Mur1 SINE Alu 0 149 14 7 717 346 228 12 25 chr12 17371080 17371161 -103886369 + RSINE1 SINE B4 46 125 -40 7 717 189 0 0 0 chr12 17371209 17371230 -103886300 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 7 717 1187 56 0 0 chr12 17371234 17371394 -103886136 - B2_Mm2 SINE B2 -34 161 2 7 717 587 167 63 0 chr12 17371577 17371703 -103885827 - B1_Mus2 SINE Alu 0 147 14 7 717 22 35 0 0 chr12 17371831 17371860 -103885670 + AT_rich Low_complexity Low_complexity 1 29 0 7 717 282 219 0 0 chr12 17372137 17372201 -103885329 + CT-rich Low_complexity Low_complexity 3 66 0 7 717 268 234 148 70 chr12 17372259 17372374 -103885156 - RSINE1 SINE B4 -30 135 12 7 717 281 273 91 0 chr12 17372597 17372674 -103884856 - ID_B1 SINE B4 -33 191 108 7 717 1238 27 7 0 chr12 17372977 17373123 -103884407 - B1_Mus2 SINE Alu 0 147 1 7 717 648 222 84 105 chr12 17373270 17373461 -103884069 - B3 SINE B2 -8 187 1 7 717 256 226 0 0 chr12 17374076 17374129 -103883401 - PB1D10 SINE Alu -64 53 1 7 717 725 241 25 59 chr12 17374298 17374501 -103883029 - B3A SINE B2 0 198 3 7 717 607 215 146 6 chr12 17374589 17374753 -103882777 + B4A SINE B4 2 188 -104 7 717 576 73 0 0 chr12 17374812 17374894 -103882636 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 717 210 71 0 0 chr12 17374894 17374922 -103882608 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 717 226 247 12 49 chr12 17375432 17375513 -103882017 - MER103 DNA DNA -42 124 47 7 717 559 198 135 0 chr12 17375556 17375682 -103881848 - B1_Mur1 SINE Alu 0 149 7 7 717 850 265 10 5 chr12 17375996 17376201 -103881329 - ID_B1 SINE B4 -18 206 1 7 717 442 213 172 0 chr12 17376859 17376981 -103880549 - RSINE1 SINE B4 -21 144 2 7 717 332 247 0 0 chr12 17377166 17377239 -103880291 - tRNA-Ala-GCY_ tRNA tRNA 0 75 3 7 717 384 282 35 7 chr12 17377255 17377398 -103880132 - B1F1 SINE Alu -2 147 1 7 717 1273 69 39 33 chr12 17377532 17377552 -103879978 - B2_Mm2 SINE B2 -13 182 165 7 717 180 0 0 0 chr12 17377552 17377572 -103879958 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 717 1273 69 39 33 chr12 17377572 17377732 -103879798 - B2_Mm2 SINE B2 -31 164 1 7 717 270 0 0 0 chr12 17377836 17377866 -103879664 + (T)n Simple_repeat Simple_repeat 1 30 0 7 717 452 234 47 0 chr12 17377879 17377986 -103879544 + PB1D7 SINE Alu 1 112 -8 7 717 542 233 0 24 chr12 17378138 17378261 -103879269 - B3A SINE B2 -76 122 3 7 717 988 200 23 19 chr12 17378514 17378728 -103878802 + B3 SINE B2 1 215 -1 7 717 322 237 119 46 chr12 17379032 17379133 -103878397 + PB1D10 SINE Alu 2 107 -10 7 717 288 0 0 0 chr12 17379133 17379165 -103878365 + (TAA)n Simple_repeat Simple_repeat 2 33 0 8 717 425 279 66 0 chr12 17379229 17379351 -103878179 - B1F1 SINE Alu -9 140 11 8 717 304 290 71 14 chr12 17381721 17381861 -103875669 - B1F1 SINE Alu 0 149 2 8 717 708 160 22 51 chr12 17382524 17382575 -103874955 + B1_Mur3 SINE Alu 1 53 -96 8 717 4025 116 124 7 chr12 17382575 17383252 -103874278 + RMER6A LTR ERVK 1 756 0 8 717 708 160 22 51 chr12 17383252 17383338 -103874192 + B1_Mur3 SINE Alu 54 134 -15 8 717 364 257 19 97 chr12 17383338 17383354 -103874176 + ID_B1 SINE B4 135 222 -2 8 717 461 227 380 0 chr12 17385495 17385645 -103871885 - B3A SINE B2 -8 208 2 8 717 1317 128 30 56 chr12 17386394 17386626 -103870904 - URR1A DNA MER1_type 0 226 1 8 717 206 204 0 22 chr12 17387197 17387242 -103870288 - L2b LINE L2 -28 3347 3304 8 717 206 280 40 13 chr12 17388047 17388123 -103869407 - L2 LINE L2 -802 2617 2540 8 717 216 297 63 0 chr12 17388415 17388433 -103869097 - B1_Mur3 SINE Alu 0 149 75 8 717 332 225 0 59 chr12 17388433 17388518 -103869012 - ID_B1 SINE B4 -18 206 127 8 717 404 235 48 19 chr12 17388771 17388875 -103868655 - B1F SINE Alu 0 149 43 8 717 615 27 0 0 chr12 17388875 17388948 -103868582 + (TCCCC)n Simple_repeat Simple_repeat 5 77 0 8 717 212 171 0 0 chr12 17388948 17388983 -103868547 + CT-rich Low_complexity Low_complexity 2 36 0 8 717 686 132 92 69 chr12 17389002 17389132 -103868398 - B1_Mur3 SINE Alu -8 141 9 8 717 276 222 92 170 chr12 17389022 17389163 -103868367 - MT2B LTR ERVL -322 279 150 8 717 964 300 54 11 chr12 17390804 17391084 -103866446 + B4A SINE B4 1 292 0 8 717 252 0 0 0 chr12 17392014 17392042 -103865488 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 717 369 0 0 0 chr12 17392109 17392150 -103865380 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 8 717 1192 204 134 134 chr12 17392590 17392794 -103864736 + MTD LTR MaLR 1 195 -224 8 717 647 228 57 29 chr12 17392794 17392934 -103864596 + B1_Mur1 SINE Alu 1 144 -5 8 717 1192 204 134 134 chr12 17392934 17393148 -103864382 + MTD LTR MaLR 196 419 0 8 717 327 191 16 0 chr12 17393152 17393215 -103864315 - ID4_ SINE ID -16 67 4 8 717 225 94 0 0 chr12 17394308 17394340 -103863190 + (A)n Simple_repeat Simple_repeat 1 32 0 8 717 280 319 169 7 chr12 17394488 17394624 -103862906 - MIR3 SINE MIR -23 185 28 8 717 245 273 45 0 chr12 17394638 17394704 -103862826 + MIRb SINE MIR 23 91 -177 8 717 291 274 73 49 chr12 17394899 17395022 -103862508 + MER105 DNA DNA 78 203 -1 8 717 224 312 25 12 chr12 17395160 17395241 -103862289 - ID4 SINE ID 0 83 2 8 717 308 223 37 39 chr12 17395254 17395385 -103862145 - PB1D10 SINE Alu -8 141 23 8 717 974 127 12 31 chr12 17395385 17395547 -103861983 - RMER4A LTR ERVK 0 466 308 8 717 684 69 29 159 chr12 17395549 17395687 -103861843 - RMER4A LTR ERVK 0 466 347 8 717 419 149 234 0 chr12 17395682 17395759 -103861771 - RMER4A LTR ERVK -334 132 40 8 717 369 0 0 0 chr12 17395759 17395800 -103861730 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 8 717 419 149 234 0 chr12 17395800 17395829 -103861701 - RMER4A LTR ERVK -427 39 3 8 717 317 250 96 81 chr12 17395829 17395952 -103861578 - PB1D10 SINE Alu -30 119 9 8 717 191 83 0 77 chr12 17397832 17397871 -103859659 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 8 717 370 321 0 9 chr12 17397939 17398046 -103859484 - PB1 SINE Alu -8 119 14 8 717 388 326 77 60 chr12 17398245 17398434 -103859096 - L1MC1 LINE L1 -103 6230 6038 8 717 1186 75 0 0 chr12 17398434 17398580 -103858950 + B1_Mus2 SINE Alu 1 146 -1 8 717 388 326 77 60 chr12 17398580 17398843 -103858687 - L1MC1 LINE L1 -296 6037 5770 8 717 382 265 48 10 chr12 17398958 17399061 -103858469 + MER3 DNA MER1_type 95 201 -8 8 717 189 0 0 0 chr12 17400560 17400581 -103856949 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 8 717 583 274 28 32 chr12 17400643 17400827 -103856703 + B3 SINE B2 1 177 -18 8 717 222 130 0 0 chr12 17400861 17400882 -103856648 + (TC)n Simple_repeat Simple_repeat 1 21 0 8 717 216 86 0 0 chr12 17400882 17400917 -103856613 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 717 222 130 0 0 chr12 17400917 17400941 -103856589 + (TC)n Simple_repeat Simple_repeat 1 24 0 8 717 666 269 144 4 chr12 17401869 17402112 -103855418 - L1M4 LINE L1 -5478 1064 788 8 717 206 310 27 53 chr12 17402112 17402187 -103855343 + L2 LINE L2 2808 2880 -539 8 717 364 125 321 71 chr12 17403402 17403514 -103854016 - B2_Mm2 SINE B2 -9 186 47 8 717 1211 130 11 0 chr12 17403635 17403812 -103853718 - B2_Mm1t SINE B2 -14 179 1 8 717 486 276 65 0 chr12 17403894 17404017 -103853513 + ID_B1 SINE B4 94 224 0 8 717 468 0 0 0 chr12 17404376 17404428 -103853102 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 717 416 350 48 48 chr12 17404452 17404767 -103852763 + MER46C DNA MER2_type 12 326 -12 8 717 200 217 0 0 chr12 17404934 17404980 -103852550 + T-rich Low_complexity Low_complexity 1 46 0 8 717 432 193 143 161 chr12 17405197 17405358 -103852172 - RSINE1 SINE B4 0 165 8 8 717 448 280 51 0 chr12 17405928 17406046 -103851484 + RSINE1 SINE B4 2 125 -40 8 717 2872 122 143 14 chr12 17406343 17406852 -103850678 - RMER15 LTR ERVL 0 575 1 8 717 418 289 123 2 chr12 17406993 17407125 -103850405 - B3A SINE B2 -33 183 40 8 717 218 325 143 12 chr12 17409967 17410051 -103847479 + PB1D10 SINE Alu 21 115 -2 8 717 213 121 0 0 chr12 17410230 17410263 -103847267 + (TCTCCC)n Simple_repeat Simple_repeat 5 37 0 8 717 889 239 0 5 chr12 17410298 17410487 -103847043 + B3A SINE B2 1 188 -10 8 717 487 29 0 28 chr12 17410601 17410672 -103846858 + (TG)n Simple_repeat Simple_repeat 1 69 0 8 717 473 262 15 37 chr12 17410672 17410807 -103846723 - RSINE1 SINE B4 -29 136 5 8 717 458 151 122 7 chr12 17411148 17411256 -103846274 + B1_Mur2 SINE Alu 36 148 -1 8 717 1020 171 72 0 chr12 17411496 17411689 -103845841 + B3 SINE B2 3 209 -7 8 717 570 14 0 0 chr12 17413428 17413500 -103844030 + L1Md_T LINE L1 6511 6582 0 8 717 526 244 111 12 chr12 17415739 17415901 -103841629 - B4 SINE B4 -50 242 65 8 717 1187 287 136 91 chr12 17415974 17416944 -103840586 - Tigger6a DNA MER2_type -21 1062 49 8 717 250 300 12 0 chr12 17418350 17418430 -103839100 - HAL1 LINE L1 -322 2185 2105 8 717 22 0 0 0 chr12 17419691 17419713 -103837817 + AT_rich Low_complexity Low_complexity 1 22 0 8 717 21 0 0 0 chr12 17420539 17420560 -103836970 + AT_rich Low_complexity Low_complexity 1 21 0 8 717 326 139 12 18 chr12 17420574 17420638 -103836892 - B2_Mm2 SINE B2 -83 115 47 8 717 1238 107 11 6 chr12 17420704 17420882 -103836648 - B2_Mm1t SINE B2 -14 179 1 8 717 26 0 0 0 chr12 17420900 17420926 -103836604 + AT_rich Low_complexity Low_complexity 1 26 0 8 717 297 164 0 0 chr12 17420962 17420996 -103836534 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 717 429 20 0 0 chr12 17420996 17421046 -103836484 + (TA)n Simple_repeat Simple_repeat 1 50 0 8 717 297 164 0 0 chr12 17421046 17421072 -103836458 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 717 633 234 66 46 chr12 17421072 17421224 -103836306 - B3A SINE B2 -42 156 2 8 717 2180 48 7 0 chr12 17421858 17422129 -103835401 - MTA_Mm LTR MaLR 0 396 124 8 717 846 152 14 20 chr12 17422367 17422515 -103835015 + B1_Mur4 SINE Alu 3 149 -1 8 717 731 263 106 142 chr12 17424214 17424413 -103833117 + B4A SINE B4 2 226 -66 8 717 568 213 94 8 chr12 17424413 17424541 -103832989 + B1_Mm SINE Alu 1 139 -8 8 717 731 263 106 142 chr12 17424541 17424643 -103832887 + B4A SINE B4 227 292 0 8 717 296 271 81 8 chr12 17424755 17424878 -103832652 + L1MB3 LINE L1 5935 6066 -117 8 717 1004 46 131 0 chr12 17425416 17425546 -103831984 + B1_Mus2 SINE Alu 1 147 0 8 717 231 36 0 0 chr12 17425546 17425574 -103831956 + (A)n Simple_repeat Simple_repeat 1 28 0 8 717 495 0 0 0 chr12 17425584 17425639 -103831891 + (GA)n Simple_repeat Simple_repeat 1 55 0 8 717 235 169 118 44 chr12 17425681 17425749 -103831781 - B1F SINE Alu 0 149 77 8 717 308 258 22 22 chr12 17425759 17425850 -103831680 - L1M4 LINE L1 -540 5644 5554 8 717 921 198 27 78 chr12 17426194 17426413 -103831117 + B3 SINE B2 1 208 -8 8 717 644 273 36 12 chr12 17426458 17426625 -103830905 + B3A SINE B2 2 172 -26 8 717 397 298 104 8 chr12 17426664 17426789 -103830741 + RSINE1 SINE B4 1 137 -28 8 717 197 131 225 28 chr12 17427048 17427119 -103830411 + L2 LINE L2 177 261 -3158 8 717 361 274 146 4 chr12 17428448 17428614 -103828916 - B3A SINE B2 -7 188 19 8 717 376 271 151 0 chr12 17429914 17430080 -103827450 + MIRc SINE MIR 60 250 -18 8 717 318 106 0 0 chr12 17430631 17430678 -103826852 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 717 347 39 59 0 chr12 17431972 17432023 -103825507 + (TCCCC)n Simple_repeat Simple_repeat 3 56 0 8 717 458 96 14 0 chr12 17432017 17432090 -103825440 + (TC)n Simple_repeat Simple_repeat 2 75 0 8 717 862 116 0 15 chr12 17432111 17432242 -103825288 - B1_Mus1 SINE Alu -18 130 2 8 718 1199 68 7 0 chr12 17434002 17434149 -103823381 + B1_Mus1 SINE Alu 1 148 0 8 718 729 239 6 19 chr12 17434694 17434856 -103822674 - RSINE1 SINE B4 -2 163 4 8 718 226 222 0 22 chr12 17435407 17435453 -103822077 + polypyrimidine Low_complexity Low_complexity 4 48 0 8 718 1133 50 0 0 chr12 17436370 17436509 -103821021 + B1_Mus1 SINE Alu 1 139 -9 8 718 216 0 0 0 chr12 17436544 17436568 -103820962 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 718 796 146 69 49 chr12 17436575 17436719 -103820811 - B1_Mur3 SINE Alu -1 148 2 9 718 230 227 0 0 chr12 17437227 17437271 -103820259 + (CACG)n Simple_repeat Simple_repeat 4 47 0 9 718 228 284 136 0 chr12 17437410 17437491 -103820039 - ORR1E LTR MaLR 0 359 268 9 718 382 302 81 76 chr12 17437529 17437701 -103819829 - ORR1E LTR MaLR -185 174 2 9 718 252 309 8 91 chr12 17438586 17438707 -103818823 + L2a LINE L2 3279 3389 -37 9 718 355 252 52 71 chr12 17438771 17438925 -103818605 - RLTR14 LTR ERV1 -65 317 167 9 718 5600 54 1 0 chr12 17439118 17439801 -103817729 - L1Md_F2 LINE L1 -12 6570 5887 9 718 613 250 39 8 chr12 17440046 17440159 -103817371 + RSINE1 SINE B4 4 121 -44 9 718 285 51 0 0 chr12 17440159 17440198 -103817332 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 718 613 250 39 8 chr12 17440198 17440213 -103817317 + RSINE1 SINE B4 122 136 -29 9 718 289 268 72 0 chr12 17440309 17440406 -103817124 + MTD LTR MaLR 2 105 -314 9 718 180 111 0 0 chr12 17441040 17441067 -103816463 + (TCC)n Simple_repeat Simple_repeat 2 28 0 9 718 663 94 10 0 chr12 17441320 17441416 -103816114 + B1_Mus2 SINE Alu 32 128 -19 9 718 351 216 8 51 chr12 17441416 17441437 -103816093 + ID_B1 SINE B4 113 224 0 9 718 345 191 43 14 chr12 17441457 17441526 -103816004 + B3A SINE B2 7 77 -121 9 718 231 88 0 0 chr12 17441533 17441567 -103815963 + (GGA)n Simple_repeat Simple_repeat 3 36 0 9 718 301 301 63 70 chr12 17442053 17442274 -103815256 + MIRc SINE MIR 6 222 -46 9 718 344 263 76 67 chr12 17442671 17442906 -103814624 - MLT2B4 LTR ERVL -54 502 213 9 718 284 293 116 47 chr12 17443037 17443166 -103814364 + MIR SINE MIR 33 170 -92 9 718 195 303 77 26 chr12 17443786 17443864 -103813666 + MIRb SINE MIR 95 176 -92 9 718 1176 48 14 7 chr12 17444155 17444301 -103813229 + B1_Mus1 SINE Alu 1 147 -1 9 718 249 0 73 0 chr12 17444309 17444350 -103813180 + (GA)n Simple_repeat Simple_repeat 2 45 0 9 718 28 0 0 0 chr12 17447023 17447051 -103810479 + AT_rich Low_complexity Low_complexity 1 28 0 9 718 1040 236 136 0 chr12 17447519 17447820 -103809710 - MTE2b LTR MaLR -35 344 3 9 718 339 258 122 29 chr12 17447852 17447886 -103809644 - B2_Mm2 SINE B2 -6 189 156 9 718 1012 140 161 0 chr12 17447886 17448072 -103809458 + B3 SINE B2 1 216 0 9 718 294 125 0 0 chr12 17448080 17448128 -103809402 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 718 432 239 54 21 chr12 17448128 17448256 -103809274 - B3A SINE B2 -50 145 2 9 718 462 319 111 24 chr12 17448258 17448682 -103808848 - L1MB3 LINE L1 -42 6141 5681 9 718 569 274 75 0 chr12 17448731 17448877 -103808653 - RSINE1 SINE B4 -7 158 2 9 718 444 37 0 0 chr12 17448988 17449042 -103808488 + (CTTA)n Simple_repeat Simple_repeat 2 55 0 9 718 915 158 0 14 chr12 17449051 17449199 -103808331 - B1_Mus1 SINE Alu 0 148 3 9 718 1690 158 73 71 chr12 17449238 17449647 -103807883 + RMER17C LTR ERVK 1 410 0 9 718 354 23 0 0 chr12 17450117 17450160 -103807370 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 718 1196 43 0 0 chr12 17450160 17450299 -103807231 - B1_Mus1 SINE Alu -9 139 1 9 718 540 0 0 0 chr12 17450654 17450714 -103806816 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 718 654 144 0 0 chr12 17451740 17451837 -103805693 + B1_Mus2 SINE Alu 51 147 0 9 718 262 284 48 128 chr12 17451741 17451866 -103805664 + B4 SINE B4 137 251 -41 9 718 911 121 8 8 chr12 17452450 17452583 -103804947 + B1_Mur3 SINE Alu 2 134 -15 9 718 687 197 7 7 chr12 17452596 17452734 -103804796 + B3 SINE B2 73 210 -6 9 718 327 85 0 0 chr12 17452899 17452946 -103804584 + (TCC)n Simple_repeat Simple_repeat 1 47 0 9 718 407 277 10 10 chr12 17452946 17453048 -103804482 - ID_B1 SINE B4 0 224 123 9 718 1208 41 20 0 chr12 17453090 17453236 -103804294 - B1_Mur4 SINE Alu 0 150 2 9 718 402 189 20 59 chr12 17453288 17453310 -103804220 - BC1_Mm scRNA scRNA -52 100 9 9 718 404 203 27 0 chr12 17453310 17453384 -103804146 - ID SINE ID -141 83 8 9 718 315 0 0 0 chr12 17453399 17453434 -103804096 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 718 985 17 0 0 chr12 17453434 17453551 -103803979 - B1_Mus2 SINE Alu -3 144 28 9 718 1097 107 6 12 chr12 17454361 17454531 -103802999 - B2_Mm2 SINE B2 -19 176 8 9 718 1067 296 88 27 chr12 17455173 17455569 -103801961 - MLT2B2 LTR ERVL -12 402 3 9 718 251 304 136 25 chr12 17456003 17456121 -103801409 - L2c LINE L2 -230 3157 3027 9 718 910 247 85 0 chr12 17456204 17456487 -103801043 + L1MB3 LINE L1 5787 6093 -90 9 718 311 340 45 9 chr12 17456640 17456755 -103800775 - MLT1H1 LTR MaLR -19 536 414 9 718 2406 141 44 22 chr12 17456755 17457167 -103800363 + MTC LTR MaLR 1 421 0 9 718 247 350 73 24 chr12 17457167 17457215 -103800315 - MLT1H1 LTR MaLR -136 413 359 9 718 216 0 0 0 chr12 17457449 17457473 -103800057 + (A)n Simple_repeat Simple_repeat 1 24 0 9 718 583 266 7 48 chr12 17457495 17457641 -103799889 + B3A SINE B2 52 191 -7 9 718 273 188 0 0 chr12 17458178 17458258 -103799272 + CT-rich Low_complexity Low_complexity 1 80 0 9 718 450 0 0 0 chr12 17458258 17458308 -103799222 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 718 686 232 14 7 chr12 17458308 17458447 -103799083 - B1_Mur2 SINE Alu -9 140 1 9 718 297 280 99 70 chr12 17458451 17458693 -103798837 - Charlie7 DNA MER1_type -597 2015 1767 9 718 233 300 14 54 chr12 17458755 17458829 -103798701 - Charlie7 DNA MER1_type -2358 254 184 9 718 448 340 0 0 chr12 17458829 17458976 -103798554 + (TG)n Simple_repeat Simple_repeat 2 148 0 9 718 246 328 67 7 chr12 17459056 17459191 -103798339 - Charlie7 DNA MER1_type -1009 1603 1461 9 718 285 261 118 66 chr12 17459252 17459404 -103798126 - Charlie7 DNA MER1_type -1247 1365 1206 9 718 1110 233 0 47 chr12 17459531 17459765 -103797765 - ID_B1 SINE B4 0 224 2 9 718 26 0 0 0 chr12 17459784 17459810 -103797720 + AT_rich Low_complexity Low_complexity 1 26 0 9 718 884 285 17 12 chr12 17459850 17460085 -103797445 - B4A SINE B4 -17 275 45 9 718 654 170 36 0 chr12 17460085 17460197 -103797333 + MTC LTR MaLR 1 116 -305 9 718 569 332 155 38 chr12 17460571 17460971 -103796559 - MER21B LTR ERV1 -105 758 312 9 718 782 161 0 17 chr12 17461028 17461273 -103796257 + (TG)n Simple_repeat Simple_repeat 1 240 0 9 718 627 186 0 0 chr12 17461289 17461515 -103796015 + (TG)n Simple_repeat Simple_repeat 1 226 0 9 718 225 297 136 86 chr12 17461962 17462205 -103795325 - L2c LINE L2 -37 3350 3096 9 718 3513 50 80 0 chr12 17462382 17462822 -103794708 - MT2C_Mm LTR ERVL 0 475 1 9 718 348 291 114 49 chr12 17462954 17463138 -103794392 - MER21B LTR ERV1 -169 694 499 9 718 362 200 23 34 chr12 17463072 17463160 -103794370 - MER77 LTR ERVL -9 598 512 9 718 424 303 38 31 chr12 17463192 17463352 -103794178 - RSINE1 SINE B4 -4 161 1 9 718 1223 119 11 0 chr12 17464020 17464196 -103793334 - B2_Mm1t SINE B2 -14 179 2 9 718 300 148 0 0 chr12 17464207 17464268 -103793262 + (T)n Simple_repeat Simple_repeat 1 61 0 9 718 1178 82 0 0 chr12 17464269 17464415 -103793115 - B1_Mus2 SINE Alu -1 146 1 9 718 976 227 14 19 chr12 17464928 17465139 -103792391 + B3 SINE B2 1 210 -6 9 718 1915 209 35 45 chr12 17465465 17465885 -103791645 + MTD LTR MaLR 3 405 -14 9 718 2971 98 8 2 chr12 17466045 17466446 -103791084 - RLTR9D LTR ERVK 0 403 1 9 718 405 125 27 14 chr12 17466447 17466520 -103791010 - ETnERV2-int LTR ERVK -2 7404 7331 9 718 8797 128 33 47 chr12 17466735 17468019 -103789511 - ETnERV2-int LTR ERVK -984 6422 5160 9 718 1578 47 5 0 chr12 17468019 17468209 -103789321 + B2_Mm1a SINE B2 1 191 -2 9 718 8797 128 33 47 chr12 17468209 17468443 -103789087 - ETnERV2-int LTR ERVK -2247 5159 4926 9 718 3841 179 29 24 chr12 17468429 17469496 -103788034 - ETnERV2-int LTR ERVK -3321 4085 2356 9 718 2343 140 92 11 chr12 17469512 17469967 -103787563 - ETnERV2-int LTR ERVK -4419 2987 2496 9 718 4063 156 97 35 chr12 17469987 17470943 -103786587 - RLTR45-int LTR ERVK -4141 3103 2088 9 718 842 266 38 68 chr12 17470958 17471354 -103786176 - ETnERV-int LTR ERVK -2928 386 3 9 718 2964 100 5 2 chr12 17471356 17471758 -103785772 - RLTR9D LTR ERVK 0 403 1 9 718 528 237 22 7 chr12 17471967 17472103 -103785427 + ORR1D2 LTR MaLR 6 143 -227 9 718 524 244 103 153 chr12 17472112 17472568 -103784962 + RMER10A LTR ERVL 1 433 -9 9 718 946 203 60 42 chr12 17472559 17472775 -103784755 + ORR1D2 LTR MaLR 151 370 0 9 718 978 102 111 35 chr12 17472826 17472998 -103784532 + RLTR24 LTR ERV1 2 186 -343 9 718 239 358 21 0 chr12 17473124 17473219 -103784311 - MER45A DNA Tip100 -1 177 81 9 718 582 309 158 25 chr12 17474314 17474713 -103782817 - MLT1C LTR MaLR 0 467 16 9 718 717 34 0 0 chr12 17475084 17475172 -103782358 + (TG)n Simple_repeat Simple_repeat 1 88 0 9 718 226 286 13 13 chr12 17475788 17475846 -103781684 - Arthur1B DNA Tip100 -3 1222 1165 9 718 621 0 0 0 chr12 17475846 17475915 -103781615 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 718 226 286 13 13 chr12 17475915 17475934 -103781596 - Arthur1B DNA Tip100 -61 1164 1146 9 718 319 129 48 0 chr12 17476310 17476372 -103781158 + PB1D7 SINE Alu 53 117 -3 9 718 582 15 0 0 chr12 17476489 17476556 -103780974 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 718 821 143 8 0 chr12 17477341 17477467 -103780063 + B1_Mur1 SINE Alu 22 148 -1 9 718 857 182 0 11 chr12 17477621 17477799 -103779731 + CT-rich Low_complexity Low_complexity 3 178 0 9 718 1237 61 0 0 chr12 17477800 17477947 -103779583 - B1_Mus1 SINE Alu -1 147 1 9 718 21 0 0 0 chr12 17477947 17477968 -103779562 + AT_rich Low_complexity Low_complexity 1 21 0 9 718 722 349 57 19 chr12 17478178 17478602 -103778928 + MLT1J LTR MaLR 1 440 -72 9 718 685 224 8 0 chr12 17478602 17478727 -103778803 + RSINE1 SINE B4 3 128 -37 9 718 486 46 0 0 chr12 17478733 17478798 -103778732 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 9 718 501 62 0 0 chr12 17478800 17478865 -103778665 + (CA)n Simple_repeat Simple_repeat 1 65 0 9 718 437 294 63 54 chr12 17478931 17479191 -103778339 - MIRb SINE MIR -9 259 1 9 718 358 36 0 52 chr12 17480691 17480749 -103776781 + (CCCCCT)n Simple_repeat Simple_repeat 3 57 0 9 718 253 308 110 0 chr12 17480762 17480853 -103776677 + MIRb SINE MIR 155 255 -13 9 718 517 309 83 38 chr12 17481997 17482263 -103775267 - B4A SINE B4 -14 278 1 9 718 257 294 0 0 chr12 17482484 17482569 -103774961 + (TG)n Simple_repeat Simple_repeat 2 86 0 9 718 371 313 78 96 chr12 17482574 17482740 -103774790 - RSINE1 SINE B4 0 165 3 1 718 188 302 61 78 chr12 17482833 17482948 -103774582 - L2b LINE L2 -18 3357 3245 1 718 2496 228 93 16 chr12 17483113 17483759 -103773771 - Lx7 LINE L1 -464 7232 6537 1 718 342 0 0 0 chr12 17483762 17483800 -103773730 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 718 229 144 97 32 chr12 17483804 17483897 -103773633 + (CATAT)n Simple_repeat Simple_repeat 2 100 0 1 718 1902 230 54 66 chr12 17483908 17484205 -103773325 - Lx7 LINE L1 -1507 6189 5906 1 718 946 137 13 20 chr12 17484205 17484354 -103773176 + B1_Mur4 SINE Alu 3 150 0 1 718 1902 230 54 66 chr12 17484354 17484475 -103773055 - Lx7 LINE L1 -1791 5905 5792 1 718 729 0 0 0 chr12 17484482 17484563 -103772967 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 1 718 1053 126 80 6 chr12 17484563 17484730 -103772800 - B2_Mm2 SINE B2 -14 181 2 1 718 1902 217 61 18 chr12 17484730 17484976 -103772554 - Lx7 LINE L1 -88 5792 5528 1 718 518 198 107 9 chr12 17485792 17485904 -103771626 + ID_B1 SINE B4 84 206 -18 1 718 429 223 125 44 chr12 17485904 17485927 -103771603 + B1F SINE Alu 3 148 -1 1 718 370 286 0 0 chr12 17486056 17486133 -103771397 - RSINE1 SINE B4 0 165 89 1 718 867 140 0 35 chr12 17486970 17486986 -103770544 - B1_Mus1 SINE Alu 0 148 136 1 718 234 0 0 0 chr12 17486986 17487012 -103770518 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1 718 867 140 0 35 chr12 17487012 17487136 -103770394 - B1_Mus1 SINE Alu -13 135 13 1 718 1185 63 0 0 chr12 17487208 17487350 -103770180 + B1_Mus1 SINE Alu 5 146 -2 1 718 425 224 56 9 chr12 17487386 17487494 -103770036 - PB1D10 SINE Alu 0 117 5 1 718 331 326 45 34 chr12 17487516 17487808 -103769722 + L1MEg LINE L1 811 1105 -4979 1 718 1181 44 0 0 chr12 17489484 17489621 -103767909 + B1_Mm SINE Alu 4 140 -7 1 718 543 81 0 0 chr12 17489621 17489707 -103767823 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 718 753 203 0 0 chr12 17490176 17490299 -103767231 - B3 SINE B2 -92 124 2 1 718 185 118 0 89 chr12 17490445 17490501 -103767029 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 718 820 145 22 7 chr12 17490508 17490647 -103766883 - B1_Mur4 SINE Alu 0 150 10 1 718 940 300 15 11 chr12 17490717 17490977 -103766553 + MER31A LTR ERV1 1 261 -224 1 718 588 234 0 0 chr12 17491180 17491287 -103766243 - PB1D10 SINE Alu -10 107 1 1 718 351 263 0 0 chr12 17491605 17491723 -103765807 + (CA)n Simple_repeat Simple_repeat 2 119 0 1 718 273 250 96 88 chr12 17491742 17491878 -103765652 - MTE2a LTR MaLR 0 379 243 1 718 347 308 73 45 chr12 17492081 17492258 -103765272 - L1ME4a LINE L1 -39 6085 5904 1 718 219 69 0 0 chr12 17492261 17492290 -103765240 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 718 214 178 0 0 chr12 17492752 17492797 -103764733 + T-rich Low_complexity Low_complexity 1 45 0 1 718 879 260 17 0 chr12 17492811 17493018 -103764512 - ID_B1 SINE B4 -66 226 5 1 718 781 113 0 0 chr12 17493063 17493169 -103764361 + B2_Mm2 SINE B2 2 107 -88 1 718 329 279 95 24 chr12 17493287 17493456 -103764074 - L1ME4a LINE L1 -665 5499 5319 1 718 256 306 0 0 chr12 17493566 17493664 -103763866 - L1ME4a LINE L1 -912 5234 5137 1 718 323 253 0 48 chr12 17493739 17493822 -103763708 - B1F1 SINE Alu 0 149 71 1 718 261 0 0 0 chr12 17493910 17493939 -103763591 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 718 328 279 39 45 chr12 17493949 17494103 -103763427 - L1ME4a LINE L1 -1411 4735 4583 1 718 332 348 115 61 chr12 17494155 17494485 -103763045 - L1ME4a LINE L1 -1611 4535 4188 1 718 681 151 0 0 chr12 17494514 17494633 -103762897 + CT-rich Low_complexity Low_complexity 4 122 0 1 718 229 338 125 0 chr12 17494680 17494760 -103762770 + 5S rRNA rRNA 1 90 -31 1 718 1328 113 80 5 chr12 17494889 17495102 -103762428 - MTC LTR MaLR -192 229 1 1 718 194 287 20 60 chr12 17496581 17496681 -103760849 - MIRc SINE MIR -2 266 171 1 718 180 191 37 19 chr12 17497439 17497546 -103759984 + (TCTCTG)n Simple_repeat Simple_repeat 2 110 0 1 718 1176 62 7 0 chr12 17497573 17497719 -103759811 + B1_Mus1 SINE Alu 1 147 -1 1 718 1033 175 15 44 chr12 17497739 17497942 -103759588 - B3A SINE B2 0 198 2 1 718 1622 27 21 0 chr12 17497966 17498154 -103759376 - B2_Mm1a SINE B2 0 193 2 1 718 903 301 9 43 chr12 17498223 17498546 -103758984 + Lx6 LINE L1 7065 7376 -84 1 718 181 257 13 79 chr12 17498871 17498947 -103758583 + MIRb SINE MIR 9 79 -189 1 718 285 75 0 0 chr12 17499443 17499483 -103758047 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 1 718 567 273 38 19 chr12 17499783 17499940 -103757590 - MIR SINE MIR 0 262 103 1 718 389 20 20 0 chr12 17500370 17500420 -103757110 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 718 586 230 119 0 chr12 17500452 17500578 -103756952 - RSINE1 SINE B4 -23 142 2 2 718 727 251 79 12 chr12 17501151 17501345 -103756185 + B3A SINE B2 1 200 -16 3 718 750 193 188 27 chr12 17501368 17501554 -103755976 + B3 SINE B2 1 216 0 4 718 406 108 0 0 chr12 17501959 17502024 -103755506 - Lx2 LINE L1 -1 6996 6932 5 718 334 260 65 28 chr12 17502184 17502291 -103755239 + Lx8 LINE L1 7220 7330 -143 6 718 392 19 39 0 chr12 17502300 17502352 -103755178 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 7 718 255 215 43 11 chr12 17502850 17502944 -103754586 + CT-rich Low_complexity Low_complexity 6 102 0 8 718 183 272 238 19 chr12 17503321 17503426 -103754104 + MIRb SINE MIR 137 264 -4 9 718 446 255 0 10 chr12 17503499 17503598 -103753932 - PB1D10 SINE Alu -1 116 19 1 718 1096 251 40 11 chr12 17503798 17504072 -103753458 + B4A SINE B4 5 286 -6 1 718 21 0 0 0 chr12 17504148 17504169 -103753361 + AT_rich Low_complexity Low_complexity 1 21 0 1 718 34967 55 7 1 chr12 17504177 17510502 -103747028 - L1Md_F2 LINE L1 0 6582 216 1 718 1332 48 3 18 chr12 17510651 17510837 -103746693 + L1Md_F2 LINE L1 5393 5585 -298 1 718 7756 66 16 1 chr12 17510838 17511819 -103745711 + L1Md_F2 LINE L1 5587 6582 0 1 718 385 284 19 45 chr12 17512147 17512302 -103745228 + L1ME2z LINE L1 5629 5779 -400 1 718 720 0 0 0 chr12 17512332 17512412 -103745118 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 1 718 325 296 83 0 chr12 17512489 17512621 -103744909 + L1ME2z LINE L1 5843 5985 -459 1 718 297 329 38 28 chr12 17513651 17513762 -103743768 + MIRm SINE MIR 32 150 -126 1 718 188 35 35 0 chr12 17514828 17514857 -103742673 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 1 718 459 178 122 0 chr12 17514886 17514976 -103742554 + B1_Mus2 SINE Alu 47 147 0 1 718 202 150 0 48 chr12 17514976 17515018 -103742512 + GA-rich Low_complexity Low_complexity 4 43 0 2 718 556 261 44 78 chr12 17515027 17515231 -103742299 - B3A SINE B2 0 198 2 2 718 470 314 143 19 chr12 17515244 17515759 -103741771 - L1MB7 LINE L1 -16 6168 5590 2 718 293 68 0 22 chr12 17515768 17515813 -103741717 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 2 718 1111 48 20 14 chr12 17515849 17515996 -103741534 - B1_Mus1 SINE Alu 0 148 1 2 718 26 50 0 0 chr12 17515996 17516036 -103741494 + AT_rich Low_complexity Low_complexity 1 40 0 2 718 526 190 137 8 chr12 17516039 17516156 -103741374 - B3 SINE B2 0 216 85 2 718 447 245 74 67 chr12 17516425 17516445 -103741085 + ID_B1 SINE B4 70 219 -5 2 718 696 161 54 39 chr12 17516445 17516574 -103740956 + B1_Mus1 SINE Alu 13 143 -5 2 718 559 71 24 0 chr12 17516581 17516666 -103740864 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 718 188 362 57 0 chr12 17517403 17517508 -103740022 - MIRc SINE MIR -83 185 75 3 718 214 213 16 16 chr12 17517771 17517833 -103739697 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 3 718 530 211 11 241 chr12 17517833 17518020 -103739510 - B1_Mur1 SINE Alu -3 146 3 3 718 942 279 103 23 chr12 17518162 17518511 -103739019 + MTEa LTR MaLR 1 377 -2 3 718 862 184 202 22 chr12 17518567 17518750 -103738780 + B3 SINE B2 1 216 0 3 718 839 219 0 0 chr12 17518782 17518928 -103738602 - B1_Mus2 SINE Alu 0 147 2 3 718 704 228 7 7 chr12 17519095 17519232 -103738298 + B3 SINE B2 1 137 -79 3 718 565 264 101 30 chr12 17519286 17519485 -103738045 + B3 SINE B2 4 216 0 3 718 1471 79 84 0 chr12 17519598 17519825 -103737705 + L1_Mus4 LINE L1 6391 6636 0 3 718 1259 34 0 0 chr12 17520133 17520279 -103737251 + B1_Mus2 SINE Alu 2 147 0 3 718 258 105 0 0 chr12 17520279 17520317 -103737213 + (A)n Simple_repeat Simple_repeat 1 38 0 4 718 1598 129 52 10 chr12 17520317 17520606 -103736924 + ORR1A4 LTR MaLR 1 345 -29 4 718 232 256 93 72 chr12 17520790 17520815 -103736715 - ORR1E LTR MaLR -260 99 76 4 718 396 0 0 0 chr12 17520815 17520859 -103736671 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 718 232 256 93 72 chr12 17520859 17520930 -103736600 - ORR1E LTR MaLR -284 75 1 4 718 1016 259 80 0 chr12 17521383 17521646 -103735884 - B4A SINE B4 -4 288 5 4 718 674 24 0 12 chr12 17521666 17521751 -103735779 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 4 718 1298 62 11 0 chr12 17521751 17521927 -103735603 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 718 943 136 12 6 chr12 17521956 17522126 -103735404 + CT-rich Low_complexity Low_complexity 4 174 0 4 718 902 146 7 20 chr12 17522134 17522281 -103735249 - B1_Mus1 SINE Alu -1 147 3 4 718 346 53 17 17 chr12 17522716 17522774 -103734756 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 718 348 305 85 42 chr12 17523020 17523222 -103734308 - HAL1-3A_ME LINE L1 -414 2444 2284 5 718 189 0 0 0 chr12 17523222 17523243 -103734287 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 5 718 224 263 38 95 chr12 17523265 17523370 -103734160 - L2c LINE L2 -156 3231 3133 5 718 620 280 26 21 chr12 17523418 17523608 -103733922 + B3A SINE B2 1 191 -7 5 718 833 221 15 44 chr12 17523608 17523812 -103733718 + B3A SINE B2 1 198 0 5 718 525 32 0 0 chr12 17524231 17524294 -103733236 + (TCC)n Simple_repeat Simple_repeat 3 65 0 5 718 1165 36 22 0 chr12 17524295 17524434 -103733096 - B1_Mus2 SINE Alu -5 142 1 5 718 597 161 0 0 chr12 17524460 17524590 -103732940 + (TG)n Simple_repeat Simple_repeat 1 130 0 5 718 810 186 6 87 chr12 17524590 17524773 -103732757 - B3A SINE B2 -16 182 15 5 718 501 236 128 20 chr12 17525392 17525587 -103731943 - MER20 DNA MER1_type -3 216 1 5 718 783 117 9 0 chr12 17526461 17526572 -103730958 - B3 SINE B2 -94 122 11 6 718 498 75 0 0 chr12 17526583 17526650 -103730880 + (TTTA)n Simple_repeat Simple_repeat 1 67 0 6 718 474 204 45 27 chr12 17526656 17526767 -103730763 - PB1D9 SINE Alu -7 113 1 6 718 1204 62 0 0 chr12 17526860 17527004 -103730526 + B1_Mus2 SINE Alu 2 145 -2 6 718 644 258 32 19 chr12 17527187 17527341 -103730189 - RSINE1 SINE B4 -8 157 2 6 718 1651 203 57 15 chr12 17527417 17527752 -103729778 - ORR1E LTR MaLR -10 349 1 6 718 1232 68 0 0 chr12 17529613 17529761 -103727769 + B1_Mus1 SINE Alu 1 148 0 6 718 527 66 0 13 chr12 17529940 17530017 -103727513 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 718 413 145 13 0 chr12 17530084 17530160 -103727370 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 718 297 125 0 0 chr12 17530164 17530220 -103727310 + (CCA)n Simple_repeat Simple_repeat 1 56 0 6 718 22 35 0 0 chr12 17530991 17531020 -103726510 + AT_rich Low_complexity Low_complexity 1 29 0 7 718 254 303 30 0 chr12 17531133 17531199 -103726331 - AmnSINE1 SINE SINE -1 574 507 7 718 548 230 76 22 chr12 17531199 17531387 -103726143 - MIR SINE MIR -71 191 3 7 718 280 303 6 154 chr12 17531676 17531832 -103725698 + YREP_Mm Unknown Unknown 164 296 -1516 7 718 479 201 308 94 chr12 17531711 17531883 -103725647 - ID_B1 SINE B4 -15 209 1 7 718 910 271 58 35 chr12 17531954 17532214 -103725316 - B4 SINE B4 -25 267 2 7 718 207 290 115 40 chr12 17532247 17532402 -103725128 - MIRb SINE MIR -108 160 14 7 718 739 167 0 60 chr12 17532560 17532694 -103724836 + B1_Mus1 SINE Alu 11 136 -12 7 718 186 71 0 0 chr12 17532694 17532722 -103724808 + (TTGGGG)n Simple_repeat Simple_repeat 2 29 0 7 718 249 333 46 0 chr12 17532906 17532993 -103724537 + MIRb SINE MIR 39 129 -139 7 718 343 174 14 68 chr12 17533801 17533875 -103723655 + ID4_ SINE ID 1 70 -13 8 718 254 246 46 0 chr12 17533950 17534015 -103723515 + B1_Mur1 SINE Alu 82 149 0 8 718 482 208 29 19 chr12 17534303 17534437 -103723093 + ID_B1 SINE B4 55 177 -115 8 718 278 62 0 40 chr12 17534650 17534700 -103722830 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 8 718 387 0 0 0 chr12 17534714 17534757 -103722773 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 718 408 218 118 10 chr12 17534967 17535069 -103722461 + ID_B1 SINE B4 54 166 -58 8 718 207 167 61 20 chr12 17537692 17537741 -103719789 - MIR SINE MIR -141 67 17 8 718 477 0 0 0 chr12 17537743 17537796 -103719734 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 718 439 125 0 0 chr12 17538189 17538253 -103719277 - RMER16 LTR ERVK 0 533 470 8 718 1167 76 0 0 chr12 17538258 17538402 -103719128 + B1_Mus1 SINE Alu 5 148 0 8 718 554 75 0 12 chr12 17538404 17538485 -103719045 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 9 718 1384 144 22 35 chr12 17538486 17538850 -103718680 - RMER16 LTR ERVK -55 478 5 8 718 487 242 20 0 chr12 17539286 17539385 -103718145 - RSINE1 SINE B4 -20 145 45 9 718 542 278 149 29 chr12 17539474 17539648 -103717882 + ID_B1 SINE B4 27 221 -3 9 718 222 62 0 0 chr12 17539652 17539684 -103717846 + (A)n Simple_repeat Simple_repeat 1 32 0 9 718 571 204 53 0 chr12 17539986 17540099 -103717431 + B1_Mur1 SINE Alu 24 142 -7 9 718 1300 77 4 4 chr12 17540111 17540361 -103717169 + (GGA)n Simple_repeat Simple_repeat 1 250 0 9 718 454 216 69 0 chr12 17540662 17540764 -103716766 + PB1D10 SINE Alu 2 110 -7 9 718 384 231 107 36 chr12 17541025 17541137 -103716393 - PB1D9 SINE Alu 0 120 1 9 718 691 268 7 16 chr12 17541137 17541328 -103716202 - B3A SINE B2 -1 215 28 9 718 644 272 188 4 chr12 17542275 17542515 -103715015 + MER97c DNA MER1_type? 13 296 -794 9 718 230 309 18 0 chr12 17542619 17542674 -103714856 + MER81 DNA AcHobo 6 61 -53 1 718 654 253 53 112 chr12 17542764 17542846 -103714684 - B3 SINE B2 -30 186 99 1 718 1361 55 32 32 chr12 17542846 17543034 -103714496 - B2_Mm2 SINE B2 -7 188 1 1 718 654 253 53 112 chr12 17543034 17543137 -103714393 - B3 SINE B2 -118 98 12 1 718 889 209 8 95 chr12 17543137 17543408 -103714122 + ORR1C2 LTR MaLR 1 223 -144 1 718 223 256 0 113 chr12 17543348 17543420 -103714110 + BC1_Mm scRNA scRNA 22 83 -69 1 718 1189 88 0 0 chr12 17543420 17543567 -103713963 + B1_Mus2 SINE Alu 1 147 0 1 718 223 256 0 113 chr12 17543567 17543591 -103713939 + BC1_Mm scRNA scRNA 84 107 -45 1 718 1652 162 78 41 chr12 17543635 17544074 -103713456 - RMER17C LTR ERVK -519 439 28 1 718 227 323 21 71 chr12 17544129 17544162 -103713368 + RLTR25A LTR ERVK 449 581 -522 1 718 292 247 19 131 chr12 17544162 17544269 -103713261 + MT2B LTR ERVL 169 263 -338 1 718 594 163 45 75 chr12 17544174 17544307 -103713223 + B1_Mm SINE Alu 19 147 0 1 718 1212 49 0 0 chr12 17544329 17544473 -103713057 + B1_Mus1 SINE Alu 5 148 0 1 718 574 285 37 33 chr12 17545468 17545682 -103711848 - B3 SINE B2 -1 215 1 1 718 779 248 6 13 chr12 17546539 17546698 -103710832 + RSINE1 SINE B4 2 159 -6 1 718 202 222 0 0 chr12 17546698 17546734 -103710796 + (CAA)n Simple_repeat Simple_repeat 3 38 0 1 718 181 300 0 0 chr12 17546981 17547031 -103710499 - L2a LINE L2 -90 3336 3287 1 718 644 312 95 13 chr12 17547598 17547913 -103709617 - MARNA DNA Mariner -14 572 232 1 718 554 75 0 12 chr12 17548026 17548107 -103709423 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1 718 621 188 92 57 chr12 17548107 17548119 -103709411 - B1_Mus2 SINE Alu -1 146 137 1 718 1235 83 0 16 chr12 17548119 17548302 -103709228 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 718 621 188 92 57 chr12 17548302 17548430 -103709100 - B1_Mus2 SINE Alu -11 136 1 1 718 455 222 76 38 chr12 17548513 17548644 -103708886 + B1_Mur1 SINE Alu 1 136 -13 1 718 243 88 0 0 chr12 17548645 17548679 -103708851 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 718 389 200 165 37 chr12 17548881 17548990 -103708540 + ID_B1 SINE B4 100 222 -2 1 718 201 184 154 0 chr12 17550161 17550221 -103707309 - L2a LINE L2 0 3426 3309 1 718 465 189 33 0 chr12 17550375 17550460 -103707070 - B1_Mur1 SINE Alu -5 144 57 1 718 367 258 90 13 chr12 17550460 17550603 -103706927 + PB1D9 SINE Alu 1 149 0 1 718 282 151 57 0 chr12 17550603 17550656 -103706874 - B1_Mus2 SINE Alu -91 56 1 1 718 22 56 0 0 chr12 17551602 17551638 -103705892 + GC_rich Low_complexity Low_complexity 1 36 0 1 718 192 77 0 0 chr12 17551886 17551912 -103705618 + (CGGA)n Simple_repeat Simple_repeat 1 26 0 1 718 261 0 0 0 chr12 17553368 17553397 -103704133 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 718 303 260 117 0 chr12 17558913 17558990 -103698540 - B1F2 SINE Alu 0 149 64 1 718 373 153 0 6 chr12 17559063 17559135 -103698395 - B3A SINE B2 -126 69 1 1 718 239 259 0 53 chr12 17559388 17559445 -103698085 - PB1D10 SINE Alu -40 77 24 1 718 455 201 132 46 chr12 17559713 17559864 -103697666 - B4A SINE B4 -128 164 1 1 718 1003 124 125 21 chr12 17560103 17560382 -103697148 + RMER10B LTR ERVL 31 385 -13 1 718 347 193 35 13 chr12 17560409 17560496 -103697034 + ORR1E LTR MaLR 292 407 -14 1 718 505 185 30 3 chr12 17560529 17560636 -103696894 - B1_Mus1 SINE Alu -8 112 1 1 718 394 248 36 50 chr12 17560636 17560686 -103696844 - ID SINE ID -143 81 34 1 718 255 147 29 29 chr12 17561930 17562000 -103695530 + CT-rich Low_complexity Low_complexity 1 70 0 1 718 346 291 75 50 chr12 17562278 17562325 -103695205 - B4A SINE B4 -44 248 201 1 718 180 0 0 0 chr12 17562325 17562345 -103695185 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 718 346 291 75 50 chr12 17562345 17562456 -103695074 - B4A SINE B4 -92 200 87 1 718 666 124 0 0 chr12 17562348 17562445 -103695085 - B1_Mus1 SINE Alu -46 102 6 1 718 388 208 0 145 chr12 17562445 17562472 -103695058 - MT2B LTR ERVL -345 256 151 1 718 418 217 50 11 chr12 17562497 17562601 -103694929 - B1F1 SINE Alu -30 119 9 1 718 1376 212 142 0 chr12 17562877 17563244 -103694286 + MTC LTR MaLR 1 419 0 1 718 385 218 9 114 chr12 17563244 17563373 -103694157 + MTC-int LTR MaLR 1 118 -1140 1 718 618 257 116 24 chr12 17563373 17563580 -103693950 - B4A SINE B4 -55 237 12 1 718 321 26 0 0 chr12 17563605 17563643 -103693887 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 719 688 232 80 30 chr12 17563648 17563848 -103693682 - B3 SINE B2 -6 210 1 1 719 324 0 0 0 chr12 17564880 17564916 -103692614 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 719 250 310 34 45 chr12 17565347 17565435 -103692095 - RSINE1 SINE B4 0 165 79 1 719 440 303 27 53 chr12 17565465 17565615 -103691915 - B4A SINE B4 -145 147 2 1 719 1001 216 24 19 chr12 17565626 17565834 -103691696 - B3 SINE B2 0 216 8 1 719 189 74 0 0 chr12 17565914 17565941 -103691589 + (T)n Simple_repeat Simple_repeat 1 27 0 1 719 639 39 0 0 chr12 17565954 17566032 -103691498 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 1 719 1108 69 14 0 chr12 17566038 17566183 -103691347 - B1_Mus1 SINE Alu 0 148 2 1 719 646 100 0 0 chr12 17566183 17566273 -103691257 - 4.5SRNA scRNA scRNA -4 90 1 1 719 819 110 17 0 chr12 17566304 17566422 -103691108 + Lx9 LINE L1 7350 7469 -175 1 719 561 294 39 44 chr12 17566856 17567059 -103690471 - ID_B1 SINE B4 -22 202 1 1 719 2547 96 71 5 chr12 17567112 17567490 -103690040 + MTC LTR MaLR 1 403 -18 1 719 1985 175 135 61 chr12 17567502 17567933 -103689597 + MTC-int LTR MaLR 675 1166 -92 1 719 1236 55 0 0 chr12 17567933 17568079 -103689451 + B1_Mus2 SINE Alu 1 146 -1 1 719 1985 175 135 61 chr12 17568079 17568188 -103689342 + MTC-int LTR MaLR 1167 1255 -3 1 719 1921 148 86 0 chr12 17568191 17568530 -103689000 + MTC LTR MaLR 1 368 -53 1 719 655 238 14 7 chr12 17568531 17568675 -103688855 - Lx8 LINE L1 -602 6871 6727 1 719 1539 254 48 32 chr12 17568656 17569119 -103688411 - Lx8 LINE L1 -907 6566 6097 1 719 801 192 242 20 chr12 17569240 17569484 -103688046 - MTD LTR MaLR 0 419 122 1 719 242 207 37 0 chr12 17569484 17569566 -103687964 + (TTATA)n Simple_repeat Simple_repeat 2 86 0 1 719 457 229 21 94 chr12 17569568 17569700 -103687830 - MTD LTR MaLR -284 123 1 1 719 299 241 301 0 chr12 17571624 17571707 -103685823 + ID_B1 SINE B4 89 196 -28 1 719 2745 51 30 3 chr12 17571760 17572097 -103685433 + ORR1A1 LTR MaLR 1 346 0 1 719 576 226 52 0 chr12 17572655 17572770 -103684760 - B1_Mur2 SINE Alu -9 140 20 1 719 302 224 55 66 chr12 17572690 17572781 -103684749 - MT2B LTR ERVL -343 258 169 1 719 342 213 80 0 chr12 17573472 17573547 -103683983 - MER34A LTR ERV1 -17 554 474 1 719 599 234 73 77 chr12 17573768 17573794 -103683736 + MER31A LTR ERV1 86 111 -374 1 719 400 239 221 0 chr12 17573794 17573907 -103683623 + B1F SINE Alu 4 141 -8 1 719 599 234 73 77 chr12 17573907 17574139 -103683391 + MER31A LTR ERV1 112 343 -142 1 719 189 0 0 0 chr12 17574168 17574189 -103683341 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 719 373 294 27 27 chr12 17574269 17574381 -103683149 - B3A SINE B2 -86 112 1 1 719 606 283 20 27 chr12 17574453 17574602 -103682928 - B3A SINE B2 -24 174 27 1 719 350 18 54 0 chr12 17574599 17574655 -103682875 - B2_Mm2 SINE B2 0 195 137 1 719 1135 75 126 0 chr12 17574740 17574899 -103682631 - B2_Mm1t SINE B2 -14 179 1 1 719 1219 112 45 6 chr12 17574909 17575088 -103682442 - B2_Mm2 SINE B2 -9 186 1 1 719 1239 61 0 0 chr12 17575795 17575942 -103681588 + B1_Mus1 SINE Alu 2 148 0 1 719 264 236 14 27 chr12 17575969 17576043 -103681487 - MERVK26-int LTR ERVK -2067 4852 4780 1 719 1929 253 15 45 chr12 17576011 17576125 -103681405 - MMTV-int LTR ERVK -2526 4727 4642 1 719 1027 96 0 7 chr12 17576125 17576262 -103681268 - B1_Mm SINE Alu -11 136 1 1 719 1929 307 47 86 chr12 17576262 17576688 -103680842 - MMTV-int LTR ERVK -2612 4641 4223 1 719 1202 43 0 0 chr12 17576688 17576828 -103680702 + B1_Mus2 SINE Alu 2 141 -6 1 719 1929 307 47 86 chr12 17576828 17577556 -103679974 - MMTV-int LTR ERVK -3031 4222 3519 1 719 186 103 0 0 chr12 17577556 17577585 -103679945 + (TATG)n Simple_repeat Simple_repeat 2 30 0 1 719 1152 83 0 0 chr12 17577585 17577730 -103679800 - B1_Mm SINE Alu -1 146 2 1 719 1929 307 47 86 chr12 17577730 17578415 -103679115 - MMTV-int LTR ERVK -3735 3518 2857 1 719 553 305 51 45 chr12 17578585 17579035 -103678495 - MMTV-int LTR ERVK -5347 1906 1513 1 719 295 262 77 31 chr12 17579416 17579546 -103677984 - RLTR13B2 LTR ERVK -32 790 655 1 719 264 242 0 31 chr12 17580211 17580275 -103677255 - RLTR13B2 LTR ERVK -1052 62 1 1 719 511 251 102 25 chr12 17580300 17580467 -103677063 - ID_B1 SINE B4 -2 222 42 1 719 869 224 198 3 chr12 17580507 17580802 -103676728 - ORR1E LTR MaLR -1 373 1 1 719 210 118 0 0 chr12 17580999 17581033 -103676497 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 719 333 213 0 0 chr12 17581115 17581176 -103676354 + RSINE1 SINE B4 1 61 -104 1 719 671 179 0 7 chr12 17583757 17583903 -103673627 + CT-rich Low_complexity Low_complexity 4 148 0 1 719 2004 202 191 33 chr12 17585111 17585623 -103671907 + RMER20B LTR ERVK 10 602 -25 1 719 731 169 55 17 chr12 17586137 17586334 -103671196 + ORR1C2 LTR MaLR 124 307 -87 1 719 365 139 189 95 chr12 17586311 17586406 -103671124 - B1_Mur3 SINE Alu -37 112 8 1 719 288 0 0 0 chr12 17587173 17587205 -103670325 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 719 1082 53 8 0 chr12 17587205 17587337 -103670193 - B1_Mus1 SINE Alu -13 135 3 1 719 537 130 230 0 chr12 17587551 17587651 -103669879 + B1_Mus1 SINE Alu 9 131 -17 1 719 4570 143 109 9 chr12 17587651 17588460 -103669070 + RMER19B LTR ERVK 1 890 -12 1 719 317 167 71 71 chr12 17588482 17588566 -103668964 + RLTR25B LTR ERVK 426 509 -519 1 719 746 62 0 0 chr12 17588500 17588596 -103668934 + B1_Mus2 SINE Alu 39 134 -13 1 719 312 0 20 40 chr12 17588596 17588646 -103668884 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 1 719 707 101 18 18 chr12 17588646 17588660 -103668870 + B1_Mur4 SINE Alu 138 150 0 1 719 746 167 253 11 chr12 17588693 17588875 -103668655 - URR1A DNA MER1_type 0 226 1 2 719 216 0 0 0 chr12 17589268 17589292 -103668238 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 719 756 169 89 0 chr12 17589292 17589416 -103668114 - B1_Mus1 SINE Alu -10 138 4 2 719 192 377 29 14 chr12 17589450 17589520 -103668010 + MIR SINE MIR 82 152 -56 2 719 299 258 15 0 chr12 17589542 17589674 -103667856 + (TATG)n Simple_repeat Simple_repeat 1 134 0 2 719 964 237 30 5 chr12 17589675 17589874 -103667656 - B3 SINE B2 -9 207 4 2 719 633 27 0 0 chr12 17589887 17589962 -103667568 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 719 854 266 4 47 chr12 17589963 17590196 -103667334 - B4 SINE B4 -69 223 1 2 719 189 132 50 50 chr12 17590409 17590449 -103667081 + L2c LINE L2 3328 3367 -20 2 719 221 208 0 40 chr12 17590415 17590465 -103667065 + MIRb SINE MIR 221 268 0 2 719 2223 123 38 6 chr12 17591361 17591704 -103665826 - ORR1B1 LTR MaLR 0 394 41 2 719 217 309 86 0 chr12 17591815 17591896 -103665634 + MER5A DNA MER1_type 51 138 -51 2 719 206 205 0 0 chr12 17592762 17592801 -103664729 + G-rich Low_complexity Low_complexity 1 39 0 2 719 805 112 8 8 chr12 17593205 17593331 -103664199 - URR1B DNA MER1_type -3 222 97 2 719 2114 85 12 68 chr12 17593332 17593672 -103663858 + ORR1A4 LTR MaLR 1 321 -8 2 719 487 304 18 28 chr12 17593776 17594041 -103663489 - HAL1-2a_MD LINE L1 -503 2521 2343 2 719 267 246 100 30 chr12 17594382 17594519 -103663011 + MIRb SINE MIR 31 178 -98 2 719 899 200 0 6 chr12 17595271 17595432 -103662098 + MTC LTR MaLR 1 160 -261 2 719 2050 122 97 28 chr12 17595982 17596343 -103661187 - ORR1B1 LTR MaLR -8 386 1 2 719 4761 99 107 110 chr12 17596343 17596474 -103661056 - ORR1B1-int LTR MaLR 0 1963 1805 2 719 2563 56 0 27 chr12 17596474 17596805 -103660725 + L1Md_F3 LINE L1 6255 6576 -8 2 719 4761 99 107 110 chr12 17596805 17597601 -103659929 - ORR1B1-int LTR MaLR -159 1804 1039 2 719 2887 161 15 45 chr12 17597632 17597873 -103659657 - RLTR11A LTR ERVK 0 528 289 2 719 213 65 0 0 chr12 17597873 17597904 -103659626 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 719 2887 161 15 45 chr12 17597904 17598200 -103659330 - RLTR11A LTR ERVK -240 288 7 2 719 1854 194 31 31 chr12 17598217 17598632 -103658898 + MYSERV-int LTR ERVK 6086 6500 -50 2 719 2927 107 39 0 chr12 17598833 17599265 -103658265 + RLTR11B LTR ERVK 1 449 -4 2 719 792 152 27 27 chr12 17599274 17599423 -103658107 - B1_Mur3 SINE Alu 0 149 1 2 719 1415 162 20 65 chr12 17599423 17599514 -103658016 - ORR1B1-int LTR MaLR -919 1044 961 2 719 1518 58 0 20 chr12 17599514 17599709 -103657821 - B2_Mm1a SINE B2 -1 192 2 2 719 1415 159 20 67 chr12 17599709 17599963 -103657567 - ORR1B1-int LTR MaLR -1003 960 718 2 719 881 147 300 69 chr12 17599922 17600155 -103657375 - MT2B LTR ERVL -314 287 1 2 719 271 122 0 0 chr12 17600156 17600197 -103657333 - MERVL_2A-int LTR ERVL -2 5759 5719 2 719 788 140 25 56 chr12 17600197 17600366 -103657164 - ORR1B1-int LTR MaLR -1323 640 499 2 719 303 88 375 19 chr12 17600341 17600445 -103657085 - B2_Mm2 SINE B2 -8 187 47 2 719 1222 124 11 0 chr12 17600492 17600669 -103656861 - B2_Mm1t SINE B2 -14 179 1 2 719 1899 208 26 178 chr12 17600672 17601280 -103656250 - ORR1B1-int LTR MaLR -993 516 1 2 719 1409 81 0 11 chr12 17601282 17601469 -103656061 - ORR1B1 LTR MaLR -2 392 208 2 719 441 273 67 162 chr12 17601740 17601950 -103655580 - ORR1B1 LTR MaLR -149 230 41 2 719 549 88 0 0 chr12 17602377 17602457 -103655073 + (TCCC)n Simple_repeat Simple_repeat 2 81 0 2 719 268 291 73 108 chr12 17603681 17604051 -103653479 - RMER17C LTR ERVK -27 383 27 2 719 385 280 8 0 chr12 17604163 17604288 -103653242 + L1MC LINE L1 3846 3971 -2175 2 719 336 24 0 0 chr12 17604288 17604329 -103653201 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 719 537 16 0 0 chr12 17604329 17604390 -103653140 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 719 841 165 103 6 chr12 17604425 17604590 -103652940 - MTC LTR MaLR 0 421 241 2 719 253 325 0 0 chr12 17604590 17604673 -103652857 + L1MD2 LINE L1 6198 6280 -79 2 719 351 338 36 58 chr12 17604728 17604866 -103652664 + ID_B1 SINE B4 84 218 -6 2 719 722 189 79 0 chr12 17604895 17605022 -103652508 - B1_Mur2 SINE Alu -12 137 1 2 719 782 181 0 0 chr12 17605592 17605719 -103651811 - B1_Mur2 SINE Alu -22 127 1 2 719 421 287 75 19 chr12 17605719 17605758 -103651772 - ID SINE ID -146 78 31 2 719 544 299 63 138 chr12 17605782 17606100 -103651430 + MTD LTR MaLR 7 300 -119 2 719 580 239 60 83 chr12 17606154 17606333 -103651197 + MTD LTR MaLR 240 389 -30 2 719 244 292 91 67 chr12 17606994 17607159 -103650371 + MIR SINE MIR 6 174 -94 2 719 333 0 0 0 chr12 17607166 17607203 -103650327 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 2 719 316 239 14 40 chr12 17608913 17608928 -103648602 - RSINE1 SINE B4 0 165 151 2 719 594 0 0 0 chr12 17608928 17608994 -103648536 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 719 316 239 14 40 chr12 17608994 17609052 -103648478 - RSINE1 SINE B4 -15 150 94 2 719 3372 129 45 59 chr12 17609146 17609183 -103648347 + RMER4B LTR ERVK 1 37 -548 2 719 342 0 0 0 chr12 17609183 17609221 -103648309 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 719 3372 129 45 59 chr12 17609221 17609508 -103648022 + RMER4B LTR ERVK 38 337 -248 2 719 1371 77 22 11 chr12 17609508 17609693 -103647837 - B2_Mm2 SINE B2 -7 188 2 2 719 3372 129 45 59 chr12 17609693 17609960 -103647570 + RMER4B LTR ERVK 338 584 -1 2 719 1206 167 163 0 chr12 17609960 17610123 -103647407 + MurERV4-int LTR ERVK 1 176 -5084 2 719 1074 38 18 18 chr12 17610123 17610286 -103647244 + (TTCTC)n Simple_repeat Simple_repeat 2 164 0 2 719 3854 149 145 7 chr12 17610286 17610988 -103646542 + MurERV4-int LTR ERVK 177 988 -4272 2 719 1967 151 9 21 chr12 17610991 17611316 -103646214 - ORR1A4 LTR MaLR -8 321 1 2 719 3009 157 34 0 chr12 17611316 17612001 -103645529 + MurERV4-int LTR ERVK 983 1778 -3482 2 719 1844 142 11 7 chr12 17612119 17612434 -103645096 + MurERV4-int LTR ERVK 4973 5260 0 2 719 3000 118 132 11 chr12 17612434 17612474 -103645056 + RMER4B LTR ERVK 1 44 -541 2 719 297 0 0 0 chr12 17612474 17612507 -103645023 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 719 333 0 0 0 chr12 17612507 17612543 -103644987 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 719 3000 118 132 11 chr12 17612543 17613022 -103644508 + RMER4B LTR ERVK 45 583 -2 2 719 243 233 111 91 chr12 17613093 17613192 -103644338 - RSINE1 SINE B4 -187 105 5 2 719 4407 36 2 2 chr12 17613192 17613695 -103643835 + RLTR1C LTR ERV1 1 503 0 2 719 3887 25 5 0 chr12 17613848 17614282 -103643248 - RLTR10C LTR ERVK 0 436 1 2 719 968 161 36 31 chr12 17614295 17614487 -103643043 - B2_Mm2 SINE B2 -2 193 1 2 719 226 276 31 31 chr12 17614595 17614692 -103642838 + L1M5 LINE L1 5589 5685 -479 2 719 411 211 0 0 chr12 17614704 17614775 -103642755 + B4 SINE B4 6 76 -216 2 719 262 257 26 71 chr12 17614862 17614975 -103642555 + L1MEg LINE L1 1493 1600 -4642 2 719 351 0 0 0 chr12 17616327 17616366 -103641164 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 719 485 264 104 28 chr12 17616392 17616536 -103640994 - RSINE1 SINE B4 -8 157 3 2 719 204 40 0 0 chr12 17617310 17617335 -103640195 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 719 483 325 74 41 chr12 17618215 17618495 -103639035 + MLT1A LTR MaLR 74 374 0 2 719 1138 289 31 29 chr12 17618495 17618951 -103638579 + L1MEg LINE L1 4929 5385 -761 2 719 347 229 83 37 chr12 17618985 17619094 -103638436 + ID_B1 SINE B4 81 194 -30 2 719 342 192 26 40 chr12 17619104 17619180 -103638350 + B1F SINE Alu 66 140 -9 2 719 356 293 145 35 chr12 17619194 17619339 -103638191 + ID_B1 SINE B4 5 165 -59 2 719 562 161 0 51 chr12 17619345 17619443 -103638087 + B1_Mur2 SINE Alu 41 133 -16 2 719 269 229 33 0 chr12 17619448 17619509 -103638021 + PB1D10 SINE Alu 55 117 0 2 719 790 222 84 90 chr12 17619800 17620201 -103637329 - RMER16 LTR ERVK 0 533 1 2 719 495 303 31 42 chr12 17620591 17620883 -103636647 + RMER1B Other Other 152 672 -670 2 719 3948 103 5 16 chr12 17620883 17621456 -103636074 - RMER2 LTR ERV1 0 567 1 2 719 447 324 32 57 chr12 17621456 17621477 -103636053 + RMER1C Other Other 673 689 -653 2 719 1483 212 36 7 chr12 17621556 17621864 -103635666 + RMER1B Other Other 594 910 -156 2 719 445 194 129 0 chr12 17622000 17622124 -103635406 + Lx5 LINE L1 6907 7046 -4 2 719 490 179 91 22 chr12 17622238 17622396 -103635134 + RMER1C Other Other 1218 1341 -1 2 719 1097 89 0 20 chr12 17622404 17622553 -103634977 + B1_Mus2 SINE Alu 2 147 0 2 719 293 0 27 0 chr12 17622562 17622599 -103634931 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 2 719 195 42 0 0 chr12 17622597 17622621 -103634909 + (GAA)n Simple_repeat Simple_repeat 2 25 0 2 719 1544 67 0 5 chr12 17622625 17622821 -103634709 + B2_Mm2 SINE B2 1 195 0 2 719 582 107 27 19 chr12 17623097 17623271 -103634259 + ORR1A4 LTR MaLR 42 329 0 2 719 2355 126 82 0 chr12 17623417 17623781 -103633749 + ORR1B1 LTR MaLR 1 394 0 2 719 1134 86 0 0 chr12 17624748 17624888 -103632642 - B1_Mus2 SINE Alu -7 140 1 2 719 209 255 0 0 chr12 17624962 17625009 -103632521 + CT-rich Low_complexity Low_complexity 3 49 0 2 719 332 278 0 0 chr12 17625011 17625083 -103632447 - ID4 SINE ID -10 73 2 2 719 392 149 27 0 chr12 17625083 17625157 -103632373 - PB1D10 SINE Alu -2 115 40 2 719 247 250 18 0 chr12 17625711 17625767 -103631763 + GA-rich Low_complexity Low_complexity 3 59 0 2 719 230 0 0 32 chr12 17625780 17625811 -103631719 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 719 754 114 30 0 chr12 17625817 17625948 -103631582 + (GGGA)n Simple_repeat Simple_repeat 3 137 0 2 719 450 200 69 10 chr12 17625959 17626060 -103631470 + B1F SINE Alu 42 148 -1 2 719 200 111 0 27 chr12 17626211 17626248 -103631282 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2 719 912 92 121 8 chr12 17626248 17626380 -103631150 - B1_Mus1 SINE Alu -1 147 1 2 719 1050 107 124 0 chr12 17626387 17626556 -103630974 - B2_Mm1a SINE B2 -1 192 3 2 719 789 160 24 0 chr12 17627356 17627481 -103630049 - B1_Mur3 SINE Alu -1 148 21 2 719 297 329 93 71 chr12 17627357 17627381 -103630149 - B4 SINE B4 -69 223 164 2 719 333 245 45 89 chr12 17627381 17627493 -103630037 - MT2B LTR ERVL -323 278 172 2 719 297 329 93 71 chr12 17627493 17627540 -103629990 - B4 SINE B4 -69 163 37 2 719 393 170 127 51 chr12 17627924 17627936 -103629594 + MT2B LTR ERVL 152 172 -429 2 719 740 146 20 2 chr12 17627936 17628059 -103629471 + B1_Mur3 SINE Alu 1 139 -10 2 719 432 0 0 0 chr12 17628059 17628107 -103629423 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 719 302 291 21 24 chr12 17628112 17628229 -103629301 - MIRm SINE MIR -154 122 4 2 719 235 135 0 0 chr12 17628923 17628960 -103628570 + B1F SINE Alu 103 139 -10 2 719 275 149 21 0 chr12 17628986 17629033 -103628497 + L1MB3 LINE L1 5875 5922 -261 2 719 239 263 95 29 chr12 17629060 17629197 -103628333 + L1MB3 LINE L1 6015 6160 -11 2 719 183 215 106 15 chr12 17629875 17629941 -103627589 - MIRb SINE MIR -53 215 144 3 719 480 18 0 0 chr12 17630400 17630457 -103627073 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 719 361 239 21 21 chr12 17630965 17631059 -103626471 + MLT1K LTR MaLR 449 542 -53 3 719 342 0 0 0 chr12 17631094 17631132 -103626398 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 719 790 309 30 61 chr12 17631728 17632024 -103625506 + B4A SINE B4 6 292 0 3 719 451 243 127 79 chr12 17632122 17632287 -103625243 + MLT1C LTR MaLR 1 180 -287 3 719 295 283 192 40 chr12 17632276 17632538 -103624992 + B4A SINE B4 6 274 -18 3 719 445 309 101 47 chr12 17632550 17632808 -103624722 + MLT1C LTR MaLR 190 461 -6 3 719 189 349 45 9 chr12 17633273 17633383 -103624147 + MER5A DNA MER1_type 35 148 -41 3 719 1144 264 51 8 chr12 17633403 17633659 -103623871 - B4 SINE B4 -17 275 9 3 719 900 173 0 0 chr12 17633709 17633848 -103623682 + B1_Mur4 SINE Alu 6 144 -6 3 719 452 236 43 146 chr12 17633894 17634058 -103623472 - B3A SINE B2 -16 182 36 3 719 205 225 0 24 chr12 17634348 17634389 -103623141 - MIRb SINE MIR -195 73 34 3 719 217 247 67 27 chr12 17635099 17635174 -103622356 - MIRb SINE MIR -187 81 4 3 719 925 119 0 36 chr12 17635925 17636064 -103621466 + B1_Mus1 SINE Alu 1 134 -14 3 719 649 139 16 0 chr12 17636073 17636195 -103621335 + GA-rich Low_complexity Low_complexity 2 125 0 3 719 733 342 70 6 chr12 17637497 17637812 -103619718 + ORR1E LTR MaLR 25 359 0 3 719 242 374 10 0 chr12 17637818 17637917 -103619613 - MLT1G LTR MaLR -318 273 174 3 719 1747 108 59 7 chr12 17638110 17638381 -103619149 + ORR1A4 LTR MaLR 2 286 -43 3 719 1359 85 11 0 chr12 17638381 17638558 -103618972 + B2_Mm1t SINE B2 1 179 -14 3 719 391 118 0 12 chr12 17638627 17638727 -103618803 + B2_Mm2 SINE B2 47 181 -14 3 719 384 176 14 0 chr12 17638716 17638790 -103618740 + ORR1A4 LTR MaLR 320 394 0 3 719 573 136 0 0 chr12 17639139 17639227 -103618303 + MT2B LTR ERVL 1 88 -445 3 719 670 232 50 22 chr12 17639250 17639417 -103618113 + MT2B LTR ERVL 242 533 -68 3 719 504 86 0 0 chr12 17639417 17639487 -103618043 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 719 1132 267 80 55 chr12 17639840 17640280 -103617250 - RLTR12B LTR ERVK -31 497 47 3 719 201 162 0 0 chr12 17640849 17640886 -103616644 + A-rich Low_complexity Low_complexity 1 37 0 3 719 27 29 0 0 chr12 17641118 17641152 -103616378 + AT_rich Low_complexity Low_complexity 1 34 0 3 719 1227 61 0 0 chr12 17641152 17641299 -103616231 - B1_Mus1 SINE Alu 0 148 2 3 719 485 315 20 20 chr12 17641419 17641571 -103615959 - RSINE1 SINE B4 -11 154 3 3 719 4120 128 30 132 chr12 17642013 17642855 -103614675 + RMER6A LTR ERVK 1 756 0 3 719 232 234 53 165 chr12 17643396 17643529 -103614001 + MER5B DNA MER1_type 60 177 -1 3 719 1173 55 0 27 chr12 17644127 17644276 -103613254 - B1_Mm SINE Alu -1 146 2 3 719 180 0 0 0 chr12 17644281 17644301 -103613229 + (T)n Simple_repeat Simple_repeat 1 20 0 3 719 257 345 52 118 chr12 17644630 17644919 -103612611 + ORR1E LTR MaLR 80 349 -10 3 719 414 0 0 0 chr12 17645797 17645843 -103611687 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 719 1323 90 23 0 chr12 17645877 17646054 -103611476 + B2_Mm2 SINE B2 1 181 -14 3 719 482 33 0 4 chr12 17646082 17646147 -103611383 + B2_Mm2 SINE B2 47 109 -107 3 719 207 0 0 0 chr12 17646155 17646178 -103611352 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 3 719 261 0 0 0 chr12 17646178 17646206 -103611324 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 719 752 257 113 68 chr12 17646587 17646942 -103610588 - MTEa LTR MaLR 0 379 9 3 719 782 287 107 58 chr12 17647096 17647556 -103609974 + RMER15 LTR ERVL 1 575 0 3 719 627 14 0 0 chr12 17648789 17648861 -103608669 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 719 866 124 7 33 chr12 17649373 17649523 -103608007 + URR1A DNA MER1_type 81 226 0 3 719 1085 243 0 0 chr12 17650042 17650248 -103607282 - B3 SINE B2 -5 211 6 3 719 332 95 68 45 chr12 17651692 17651780 -103605750 - L1Md_F2 LINE L1 0 6582 6493 3 719 633 309 98 5 chr12 17651787 17652011 -103605519 - 7SK RNA RNA -86 245 1 3 719 277 183 70 104 chr12 17652039 17652240 -103605290 + RMER17A2 LTR ERVK 259 452 -454 3 719 667 145 97 22 chr12 17652212 17652346 -103605184 - B1_Mur2 SINE Alu -1 148 5 3 719 684 0 0 0 chr12 17652490 17652566 -103604964 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 719 1344 271 43 11 chr12 17652583 17653024 -103604506 - L1M4 LINE L1 -2017 4129 3675 3 719 402 211 70 0 chr12 17653554 17653625 -103603905 + RSINE1 SINE B4 66 141 -24 3 719 309 118 0 0 chr12 17653627 17653678 -103603852 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 719 989 101 121 36 chr12 17653751 17653916 -103603614 + B2_Mm1t SINE B2 1 179 -14 3 719 392 281 89 76 chr12 17654287 17654445 -103603085 + ORR1E LTR MaLR 2 161 -198 3 719 384 22 0 0 chr12 17654448 17654493 -103603037 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 719 1385 70 43 0 chr12 17654602 17654787 -103602743 - B2_Mm2 SINE B2 -1 194 2 3 719 303 317 16 32 chr12 17655821 17655945 -103601585 - L2b LINE L2 -10 3365 3244 3 719 405 299 45 122 chr12 17655963 17655989 -103601541 + B4 SINE B4 70 213 -79 3 719 871 169 0 0 chr12 17655989 17656119 -103601411 + B1_Mur1 SINE Alu 7 136 -13 3 719 195 125 0 0 chr12 17656651 17656691 -103600839 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 3 719 187 261 13 104 chr12 17656748 17656825 -103600705 - MIRb SINE MIR -181 87 18 3 719 180 267 0 0 chr12 17657395 17657455 -103600075 + (CATA)n Simple_repeat Simple_repeat 1 60 0 3 719 441 0 0 0 chr12 17657539 17657588 -103599942 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 719 1261 263 40 105 chr12 17659531 17659931 -103597599 - MTE2b LTR MaLR -5 374 1 3 719 339 25 0 0 chr12 17661055 17661095 -103596435 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 719 21 36 0 0 chr12 17661095 17661123 -103596407 + AT_rich Low_complexity Low_complexity 1 28 0 3 719 192 204 44 22 chr12 17661278 17661323 -103596207 - MIRb SINE MIR -163 105 60 3 719 1140 262 18 57 chr12 17662158 17662441 -103595089 - MTE2b LTR MaLR -105 274 3 3 719 389 229 0 68 chr12 17662445 17662548 -103594982 - ID4 SINE ID -50 102 7 3 719 294 359 88 40 chr12 17662593 17662819 -103594711 - MLT1J2 LTR MaLR -211 237 1 3 719 1911 185 35 82 chr12 17662999 17663489 -103594041 + RLTR1B LTR ERV1 1 512 0 3 719 269 68 23 0 chr12 17663830 17663874 -103593656 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 3 719 881 247 214 23 chr12 17663978 17664277 -103593253 + MTD LTR MaLR 10 365 -54 3 719 980 219 21 42 chr12 17664295 17664533 -103592997 - B4A SINE B4 -40 252 20 3 719 770 181 0 16 chr12 17664551 17664680 -103592850 - B1_Mur1 SINE Alu -2 147 21 3 719 311 336 32 16 chr12 17665835 17665959 -103591571 - MLT1D LTR MaLR -370 135 10 3 719 205 152 0 0 chr12 17665965 17665998 -103591532 + G-rich Low_complexity Low_complexity 4 36 0 3 719 190 268 0 78 chr12 17666004 17666081 -103591449 - L2 LINE L2 -2787 632 562 3 719 219 184 41 0 chr12 17666902 17666951 -103590579 + CT-rich Low_complexity Low_complexity 4 54 0 3 719 886 195 201 0 chr12 17667398 17667572 -103589958 + B3 SINE B2 2 210 -6 3 719 320 283 104 0 chr12 17667654 17667760 -103589770 + PB1 SINE Alu 11 127 0 3 719 531 197 244 0 chr12 17667900 17668027 -103589503 + RSINE1 SINE B4 2 159 -6 3 719 527 243 126 0 chr12 17668088 17668199 -103589331 + ID_B1 SINE B4 84 208 -16 3 719 426 39 0 0 chr12 17668802 17668854 -103588676 + (GGA)n Simple_repeat Simple_repeat 2 53 0 3 719 811 250 31 21 chr12 17669115 17669307 -103588223 + B3A SINE B2 1 194 -4 3 719 502 254 115 0 chr12 17669583 17669713 -103587817 + ID_B1 SINE B4 78 222 -2 3 719 921 150 197 16 chr12 17669738 17669921 -103587609 - B3 SINE B2 0 216 1 3 719 347 282 54 47 chr12 17670163 17670202 -103587328 + L1MEg LINE L1 1812 1851 -4233 3 719 1059 129 14 0 chr12 17670202 17670349 -103587181 + B1_Mur4 SINE Alu 1 149 -1 3 719 347 282 54 47 chr12 17670349 17670458 -103587072 + L1MEg LINE L1 1852 1961 -4123 3 719 202 269 72 0 chr12 17670628 17670706 -103586824 + MIRc SINE MIR 87 170 -38 3 719 661 287 79 5 chr12 17672218 17672421 -103585109 + B4 SINE B4 1 218 -74 3 719 574 288 41 7 chr12 17672435 17672582 -103584948 + RSINE1 SINE B4 2 153 -12 3 719 237 292 65 65 chr12 17672633 17672710 -103584820 + B4 SINE B4 216 292 0 3 719 853 287 122 12 chr12 17673222 17673550 -103583980 + MLT1B LTR MaLR 11 374 -16 3 719 1142 243 56 32 chr12 17674069 17674354 -103583176 + B4A SINE B4 1 292 0 3 719 924 169 7 0 chr12 17674497 17674645 -103582885 + B1_Mur4 SINE Alu 2 150 0 3 719 527 211 24 0 chr12 17674645 17674811 -103582719 + GA-rich Low_complexity Low_complexity 1 170 0 3 719 291 266 74 67 chr12 17674912 17675061 -103582469 + MLT1B LTR MaLR 412 561 -8 3 719 739 161 105 0 chr12 17675189 17675313 -103582217 + B1_Mus2 SINE Alu 5 141 -6 3 719 446 200 169 39 chr12 17675468 17675598 -103581932 + B1_Mur1 SINE Alu 2 148 -1 3 719 192 329 12 12 chr12 17676181 17676261 -103581269 - L2b LINE L2 -239 3136 3057 3 719 1244 61 0 0 chr12 17676989 17677136 -103580394 - B1_Mus2 SINE Alu 0 147 1 3 719 863 238 114 106 chr12 17677471 17677629 -103579901 + ORR1D2 LTR MaLR 1 158 -212 3 719 1035 114 0 0 chr12 17677629 17677795 -103579735 + (TC)n Simple_repeat Simple_repeat 2 167 0 3 719 863 238 114 106 chr12 17677795 17678003 -103579527 + ORR1D2 LTR MaLR 159 369 -1 3 719 1702 128 14 68 chr12 17678223 17678516 -103579014 - ORR1A4 LTR MaLR -52 277 1 4 719 237 244 0 0 chr12 17679054 17679099 -103578431 + MTE2b LTR MaLR 10 54 -325 4 719 780 212 53 26 chr12 17679096 17679285 -103578245 + MTE2b LTR MaLR 163 356 -23 4 719 964 190 13 0 chr12 17679994 17680152 -103577378 + RSINE1 SINE B4 2 161 -4 4 719 229 171 0 0 chr12 17681231 17681266 -103576264 - PB1D9 SINE Alu -8 112 78 4 719 1440 152 0 9 chr12 17681834 17682060 -103575470 - URR1B DNA MER1_type 0 225 2 4 719 745 254 11 28 chr12 17682955 17683137 -103574393 + B3A SINE B2 2 180 -18 4 719 339 316 63 19 chr12 17683549 17683707 -103573823 - L1MB8 LINE L1 -34 6144 5980 4 719 211 184 61 0 chr12 17683853 17683902 -103573628 + CT-rich Low_complexity Low_complexity 1 52 0 4 719 307 307 98 10 chr12 17683904 17684006 -103573524 - PB1D7 SINE Alu -6 114 4 4 719 429 109 0 0 chr12 17684039 17684103 -103573427 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 719 268 264 157 19 chr12 17684120 17684228 -103573302 - MER46C DNA MER2_type -14 324 202 4 719 871 127 7 36 chr12 17684217 17684356 -103573174 + B1_Mus1 SINE Alu 14 148 0 4 719 205 143 20 20 chr12 17684609 17684659 -103572871 + T-rich Low_complexity Low_complexity 1 50 0 4 719 1184 204 19 5 chr12 17684659 17684871 -103572659 - B3 SINE B2 -1 215 1 4 719 299 105 18 0 chr12 17684882 17684939 -103572591 + (TATG)n Simple_repeat Simple_repeat 4 61 0 4 719 446 234 0 0 chr12 17684972 17685049 -103572481 - B3A SINE B2 -120 78 2 4 719 359 152 13 0 chr12 17685076 17685155 -103572375 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 719 703 279 17 0 chr12 17685170 17685349 -103572181 - B3A SINE B2 -16 182 1 4 719 375 148 272 0 chr12 17685544 17685625 -103571905 - B1_Mur1 SINE Alu -33 116 14 4 719 297 354 101 58 chr12 17685639 17685846 -103571684 + MLT1J LTR MaLR 205 420 -92 4 719 946 239 76 73 chr12 17685942 17686191 -103571339 - B4 SINE B4 0 292 48 4 719 2108 183 9 90 chr12 17686191 17686647 -103570883 + MTD LTR MaLR 1 419 0 4 719 946 239 76 73 chr12 17686647 17686686 -103570844 - B4 SINE B4 -245 47 3 4 719 354 277 50 83 chr12 17686697 17686878 -103570652 - L1ME1 LINE L1 -50 6129 5955 4 719 22 35 0 0 chr12 17686905 17686934 -103570596 + AT_rich Low_complexity Low_complexity 1 29 0 4 719 311 194 41 0 chr12 17686937 17687035 -103570495 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 719 890 266 11 115 chr12 17687035 17687226 -103570304 - B3A SINE B2 -13 182 12 4 719 361 372 112 12 chr12 17687564 17687822 -103569708 - LTR16A LTR ERVL -157 294 11 4 719 246 287 22 33 chr12 17688568 17688658 -103568872 - B3 SINE B2 -1 215 127 4 719 1116 239 18 39 chr12 17688632 17688911 -103568619 - ORR1D2 LTR MaLR -96 274 2 4 719 185 65 32 0 chr12 17689392 17689423 -103568107 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 719 860 155 0 51 chr12 17689436 17689592 -103567938 - B1_Mur3 SINE Alu -1 148 1 4 719 642 286 68 29 chr12 17689899 17690023 -103567507 - L1MB7 LINE L1 -145 6039 5906 4 719 495 0 0 0 chr12 17690023 17690078 -103567452 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 719 444 19 0 0 chr12 17690078 17690130 -103567400 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 719 1093 107 0 0 chr12 17690130 17690270 -103567260 - B1_Mus1 SINE Alu -8 140 1 4 719 642 286 68 29 chr12 17690270 17690424 -103567106 - L1MB7 LINE L1 -279 5905 5750 4 719 180 0 0 0 chr12 17690722 17690742 -103566788 + (TTA)n Simple_repeat Simple_repeat 1 20 0 4 719 658 271 0 7 chr12 17690762 17690907 -103566623 - ID_B1 SINE B4 0 224 81 4 719 420 217 174 8 chr12 17690989 17691110 -103566420 - L1MB7 LINE L1 -1052 5094 4954 4 719 227 340 63 13 chr12 17691111 17691269 -103566261 + YREP_Mm Unknown Unknown 131 296 -1516 4 719 779 198 28 13 chr12 17691156 17691312 -103566218 - ID_B1 SINE B4 -73 219 68 4 719 829 210 40 15 chr12 17691315 17691513 -103566017 - L1MB7 LINE L1 -1216 4930 4728 4 719 556 326 5 65 chr12 17691572 17691624 -103565906 + MER5A DNA MER1_type 2 51 -138 4 719 615 135 423 0 chr12 17691624 17691780 -103565750 + URR1A DNA MER1_type 1 222 -4 4 719 556 326 5 65 chr12 17691780 17691927 -103565603 + MER5A DNA MER1_type 52 189 0 4 719 305 262 12 48 chr12 17692130 17692214 -103565316 + B4A SINE B4 1 81 -211 4 719 559 254 33 72 chr12 17692213 17692366 -103565164 - MTD LTR MaLR -14 405 233 4 719 653 208 76 8 chr12 17692371 17692502 -103565028 + B1_Mur1 SINE Alu 7 146 -3 4 719 561 68 0 0 chr12 17692502 17692576 -103564954 + (CAAG)n Simple_repeat Simple_repeat 2 75 0 4 719 1096 201 34 14 chr12 17692596 17692803 -103564727 + B3 SINE B2 4 214 -2 4 719 190 288 68 0 chr12 17693309 17693382 -103564148 - MIRm SINE MIR -155 121 44 4 719 597 264 7 20 chr12 17693576 17693723 -103563807 + RSINE1 SINE B4 3 147 -18 4 719 904 241 10 19 chr12 17694124 17694331 -103563199 + B3 SINE B2 4 208 -8 4 719 369 319 88 76 chr12 17694348 17694599 -103562931 - MLT1B LTR MaLR -28 362 109 4 89 312 335 65 35 chr12 17694613 17694783 -103562747 + ORR1E LTR MaLR 9 183 -176 4 720 275 0 29 0 chr12 17695127 17695162 -103562368 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 4 720 558 136 437 0 chr12 17695599 17695702 -103561828 - B1_Mur1 SINE Alu -1 148 1 4 720 21 0 0 0 chr12 17695742 17695763 -103561767 + AT_rich Low_complexity Low_complexity 1 21 0 4 720 456 104 0 0 chr12 17695773 17695840 -103561690 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 720 429 373 39 19 chr12 17695843 17696051 -103561479 + MLT1J1 LTR MaLR 52 263 -181 4 720 311 355 40 70 chr12 17696818 17697018 -103560512 - MIR3 SINE MIR -6 202 9 4 720 225 0 0 0 chr12 17697169 17697194 -103560336 + (CGGGGG)n Simple_repeat Simple_repeat 5 29 0 4 720 196 308 130 49 chr12 17698495 17698618 -103558912 + MIRb SINE MIR 114 246 -22 4 720 240 127 47 16 chr12 17700277 17700341 -103557189 + GA-rich Low_complexity Low_complexity 5 70 0 4 720 315 49 0 0 chr12 17701280 17701321 -103556209 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 720 309 270 0 13 chr12 17701755 17701830 -103555700 + ID4 SINE ID 3 76 -7 4 720 243 0 0 0 chr12 17702909 17702936 -103554594 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 720 184 323 123 76 chr12 17703217 17703388 -103554142 - MIRb SINE MIR -32 236 58 4 720 205 276 66 75 chr12 17704142 17704248 -103553282 + L2 LINE L2 36 140 -3279 4 720 428 274 45 19 chr12 17705240 17705396 -103552134 + HAL1-2a_MD LINE L1 2337 2496 -528 4 720 198 304 42 42 chr12 17706027 17706099 -103551431 + MIR3 SINE MIR 110 181 -27 4 720 604 171 202 0 chr12 17707315 17707444 -103550086 + B3 SINE B2 5 159 -57 4 720 21 0 0 0 chr12 17707858 17707879 -103549651 + AT_rich Low_complexity Low_complexity 1 21 0 4 720 542 288 0 36 chr12 17707883 17708049 -103549481 - RSINE1 SINE B4 -3 162 3 4 720 646 204 56 42 chr12 17709379 17709522 -103548008 + B1_Mur2 SINE Alu 3 147 -2 4 720 420 20 0 0 chr12 17709527 17709576 -103547954 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 720 502 279 15 8 chr12 17709593 17709723 -103547807 + RSINE1 SINE B4 2 132 -33 4 720 22 56 0 0 chr12 17709723 17709759 -103547771 + AT_rich Low_complexity Low_complexity 1 36 0 4 720 2018 195 44 17 chr12 17709962 17710369 -103547161 + MTD LTR MaLR 2 419 0 4 720 4826 215 71 29 chr12 17710369 17711576 -103545954 + MTD-int LTR MaLR 1 1258 0 4 720 389 255 50 10 chr12 17711576 17711675 -103545855 + MTD LTR MaLR 1 103 -318 4 720 328 148 19 0 chr12 17711666 17711720 -103545810 + B1_Mur4 SINE Alu 49 103 -47 4 720 2801 96 10 17 chr12 17711720 17712134 -103545396 + Lx LINE L1 6244 6654 0 4 720 244 191 69 56 chr12 17712134 17712151 -103545379 + PB1D9 SINE Alu 107 120 0 4 720 1306 189 197 14 chr12 17712151 17712435 -103545095 + MTD LTR MaLR 84 419 0 4 720 21 0 0 0 chr12 17713237 17713258 -103544272 + GC_rich Low_complexity Low_complexity 1 21 0 4 720 351 0 0 0 chr12 17713425 17713464 -103544066 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4 720 709 130 0 9 chr12 17713474 17713583 -103543947 + B3 SINE B2 1 108 -108 4 720 922 310 37 47 chr12 17713628 17714119 -103543411 - L1MB7 LINE L1 -58 6126 5641 4 720 311 323 127 16 chr12 17714401 17714590 -103542940 + MLT1J LTR MaLR 254 463 -49 4 720 265 299 0 56 chr12 17714777 17714877 -103542653 + L2b LINE L2 3024 3118 -269 4 720 819 191 52 113 chr12 17714885 17715115 -103542415 + B4 SINE B4 8 223 -69 4 720 970 66 29 22 chr12 17714977 17715116 -103542414 + B1_Mur4 SINE Alu 10 149 -1 4 720 301 218 266 26 chr12 17715125 17715277 -103542253 + B4A SINE B4 82 270 -22 4 720 786 242 13 0 chr12 17715936 17716093 -103541437 + RSINE1 SINE B4 3 161 -4 4 720 234 0 0 0 chr12 17716516 17716542 -103540988 + (CAGGG)n Simple_repeat Simple_repeat 5 30 0 4 720 284 224 46 93 chr12 17716552 17716660 -103540870 + MIR SINE MIR 29 131 -77 4 720 1014 221 96 40 chr12 17716687 17716937 -103540593 + B4 SINE B4 29 292 0 4 720 2629 152 9 19 chr12 17718050 17718473 -103539057 + MTC LTR MaLR 1 419 -2 4 720 31 0 0 0 chr12 17719409 17719440 -103538090 + AT_rich Low_complexity Low_complexity 1 31 0 4 720 256 210 73 48 chr12 17719872 17719962 -103537568 - MIRb SINE MIR -132 136 39 4 720 450 289 109 76 chr12 17720008 17720184 -103537346 + MLT2B1 LTR ERVL 17 199 -321 4 720 1310 209 105 61 chr12 17720184 17720546 -103536984 - MTEa LTR MaLR 0 379 2 4 720 450 289 109 76 chr12 17720546 17720579 -103536951 + MLT2B1 LTR ERVL 200 233 -287 4 720 586 270 46 31 chr12 17720562 17720757 -103536773 + MLT2B1 LTR ERVL 360 557 -10 4 720 968 229 18 48 chr12 17721709 17721938 -103535592 + ID_B1 SINE B4 3 224 0 4 720 2062 122 69 20 chr12 17722996 17723346 -103534184 + ORR1B2 LTR MaLR 1 367 0 4 720 354 45 0 0 chr12 17723431 17723475 -103534055 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 720 260 262 0 0 chr12 17723526 17723587 -103533943 + GA-rich Low_complexity Low_complexity 2 62 0 4 720 317 278 67 129 chr12 17723688 17723882 -103533648 - MER31B LTR ERV1 -284 182 1 5 720 619 219 0 31 chr12 17724426 17724553 -103532977 - B1_Mur1 SINE Alu 0 149 27 5 720 376 254 46 86 chr12 17724553 17724577 -103532953 - ID_B1 SINE B4 0 224 80 5 720 660 296 0 0 chr12 17724701 17724863 -103532667 + RSINE1 SINE B4 4 165 0 5 720 263 234 24 94 chr12 17725821 17725906 -103531624 + MLT1F LTR MaLR 175 253 -295 5 720 1822 262 79 22 chr12 17726585 17727226 -103530304 + L1MB7 LINE L1 5376 6080 -104 5 720 496 308 70 66 chr12 17727264 17727521 -103530009 + B4A SINE B4 35 292 0 5 720 722 175 51 7 chr12 17728308 17728446 -103529084 - B1_Mur1 SINE Alu -3 146 3 5 720 1103 163 49 5 chr12 17728519 17728723 -103528807 - URR1B DNA MER1_type 0 225 13 5 720 387 0 0 0 chr12 17728987 17729030 -103528500 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 720 2395 132 25 15 chr12 17729030 17729438 -103528092 - MTC LTR MaLR -9 412 1 5 720 218 167 0 23 chr12 17730945 17730988 -103526542 - L2b LINE L2 -302 3073 3032 5 720 293 196 28 62 chr12 17731977 17732156 -103525374 + GA-rich Low_complexity Low_complexity 2 174 0 5 720 763 241 25 30 chr12 17732210 17732407 -103525123 - B3A SINE B2 -1 197 2 5 720 699 251 47 0 chr12 17732431 17732602 -103524928 - B3A SINE B2 -16 182 4 5 720 279 0 0 0 chr12 17734047 17734078 -103523452 + (T)n Simple_repeat Simple_repeat 1 31 0 5 720 490 226 0 6 chr12 17736601 17736724 -103520806 + B1F SINE Alu 1 120 0 5 720 724 224 19 13 chr12 17736727 17736881 -103520649 + ID_B1 SINE B4 1 155 -69 5 720 721 274 152 16 chr12 17736892 17737207 -103520323 + L1MB8 LINE L1 4942 5299 -847 5 720 801 192 248 0 chr12 17737279 17737493 -103520037 - MTEb LTR MaLR -108 271 5 5 720 249 350 29 0 chr12 17737671 17737811 -103519719 + L1MB8 LINE L1 5859 6002 -176 5 720 399 41 0 0 chr12 17737833 17737882 -103519648 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 720 444 269 21 97 chr12 17737896 17738040 -103519490 - RSINE1 SINE B4 -30 135 3 5 720 401 212 22 61 chr12 17738193 17738357 -103519173 - MTEa LTR MaLR -20 359 149 5 720 737 179 139 58 chr12 17738364 17738572 -103518958 + URR1B DNA MER1_type 1 225 0 5 720 598 257 34 14 chr12 17738576 17738722 -103518808 - MTEa LTR MaLR -230 149 1 5 720 243 250 29 0 chr12 17740304 17740440 -103517090 + GA-rich Low_complexity Low_complexity 1 139 0 5 720 246 62 0 0 chr12 17740962 17740994 -103516536 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 5 720 259 289 102 10 chr12 17741009 17741107 -103516423 - MIRb SINE MIR -76 192 86 5 720 248 173 132 19 chr12 17741822 17741875 -103515655 + PB1 SINE Alu 29 87 -62 5 720 30 0 0 0 chr12 17742334 17742364 -103515166 + GC_rich Low_complexity Low_complexity 1 30 0 5 720 180 0 0 0 chr12 17743077 17743097 -103514433 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 5 720 567 0 0 0 chr12 17743185 17743248 -103514282 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 720 726 230 98 65 chr12 17743670 17743884 -103513646 - ID_B1 SINE B4 -1 223 3 5 720 204 40 0 0 chr12 17744097 17744122 -103513408 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 5 720 227 226 0 54 chr12 17744356 17744412 -103513118 - MIR SINE MIR -75 133 81 5 720 333 0 0 0 chr12 17744430 17744467 -103513063 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 720 463 122 11 53 chr12 17744953 17745048 -103512482 + B1_Mur3 SINE Alu 59 149 0 5 720 801 223 15 25 chr12 17745062 17745260 -103512270 - B3A SINE B2 -1 197 2 5 720 207 0 0 0 chr12 17745556 17745579 -103511951 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 5 720 200 152 64 21 chr12 17750633 17750680 -103506850 + MIR SINE MIR 104 152 -56 5 720 241 130 18 18 chr12 17753394 17753449 -103504081 + A-rich Low_complexity Low_complexity 2 56 0 5 720 317 125 18 0 chr12 17754598 17754654 -103502876 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 5 720 243 0 0 0 chr12 17755060 17755087 -103502443 + (T)n Simple_repeat Simple_repeat 1 27 0 5 720 256 346 67 0 chr12 17755113 17755217 -103502313 + MIRm SINE MIR 29 139 -137 5 720 414 0 0 0 chr12 17755353 17755399 -103502131 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 720 340 259 0 0 chr12 17755528 17755609 -103501921 + L1ME1 LINE L1 6071 6151 -28 5 720 285 297 0 0 chr12 17755626 17755700 -103501830 + PB1D10 SINE Alu 1 74 -43 5 720 381 227 63 63 chr12 17755797 17755811 -103501719 - PB1 SINE Alu 0 127 115 5 720 483 298 67 67 chr12 17755811 17756005 -103501525 - B3A SINE B2 -3 195 2 5 720 550 221 7 7 chr12 17756005 17756117 -103501413 - B1_Mur3 SINE Alu -13 114 1 5 720 244 420 42 50 chr12 17757683 17757921 -103499609 + L2b LINE L2 3123 3358 -17 5 720 372 43 0 0 chr12 17758362 17758408 -103499122 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 720 777 22 0 0 chr12 17760039 17760130 -103497400 + (TCTCCC)n Simple_repeat Simple_repeat 1 91 0 5 720 186 321 59 12 chr12 17761287 17761372 -103496158 + MIR3 SINE MIR 70 158 -50 5 720 558 43 0 0 chr12 17761542 17761611 -103495919 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 720 553 275 18 30 chr12 17762005 17762170 -103495360 + RSINE1 SINE B4 3 165 0 5 720 314 203 8 23 chr12 17762190 17762321 -103495209 + (CA)n Simple_repeat Simple_repeat 1 129 0 5 720 31 26 0 0 chr12 17762324 17762362 -103495168 + AT_rich Low_complexity Low_complexity 1 38 0 5 720 604 268 150 20 chr12 17762391 17762684 -103494846 + MLT1A0 LTR MaLR 17 347 -18 5 720 784 305 11 11 chr12 17762966 17763198 -103494332 - ID_B1 SINE B4 -54 238 14 5 720 24 0 0 0 chr12 17763498 17763522 -103494008 + AT_rich Low_complexity Low_complexity 1 24 0 5 720 357 289 141 0 chr12 17763570 17763691 -103493839 - B1F1 SINE Alu -11 138 1 5 720 1845 127 131 70 chr12 17764726 17765123 -103492407 - MTC LTR MaLR 0 421 1 5 720 1209 100 124 5 chr12 17765267 17765468 -103492062 + URR1B DNA MER1_type 1 225 0 5 720 255 331 108 16 chr12 17765643 17765656 -103491874 - L1M4 LINE L1 -1291 4852 4840 5 720 272 244 25 13 chr12 17765656 17765735 -103491795 - ID4 SINE ID -3 80 1 5 720 340 284 127 1 chr12 17765735 17765850 -103491680 - L1M4 LINE L1 -1304 4842 4712 5 720 224 261 15 30 chr12 17765854 17765921 -103491609 + B3A SINE B2 21 86 -112 5 720 292 284 128 38 chr12 17765866 17766073 -103491457 + B4A SINE B4 32 292 0 5 720 261 0 0 0 chr12 17766078 17766107 -103491423 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 720 860 264 34 11 chr12 17766140 17766404 -103491126 - L1M4 LINE L1 -1413 4733 4464 5 720 435 321 0 56 chr12 17766410 17766552 -103490978 + B1F SINE Alu 3 136 -13 5 720 22 0 0 0 chr12 17766566 17766588 -103490942 + AT_rich Low_complexity Low_complexity 1 22 0 5 720 268 285 84 81 chr12 17766597 17766944 -103490586 - L1M4 LINE L1 -1671 4475 4128 5 720 681 167 96 14 chr12 17767111 17767257 -103490273 + ORR1A2 LTR MaLR 1 158 -169 5 720 392 317 82 30 chr12 17767276 17767507 -103490023 - L1M4 LINE L1 -2053 4093 3851 5 720 771 234 57 57 chr12 17767543 17767770 -103489760 - RCHARR1 DNA MER1_type -745 229 3 5 720 730 248 0 0 chr12 17767777 17767922 -103489608 + RSINE1 SINE B4 5 149 -16 5 720 485 263 124 30 chr12 17767994 17768364 -103489166 - L1M4 LINE L1 -2289 3857 3432 5 720 749 232 140 27 chr12 17768371 17768663 -103488867 - ORR1E LTR MaLR 0 359 35 5 720 208 49 0 68 chr12 17768886 17768930 -103488600 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 5 720 417 286 35 26 chr12 17769873 17769988 -103487542 - PB1D10 SINE Alu -1 116 1 5 720 615 309 36 12 chr12 17769988 17770064 -103487466 - ID SINE ID -143 81 2 5 720 590 326 106 9 chr12 17770085 17770367 -103487163 + B4A SINE B4 2 270 -22 5 720 517 188 99 0 chr12 17770585 17770686 -103486844 - PB1D9 SINE Alu -6 114 4 5 720 1018 156 96 14 chr12 17771307 17771515 -103486015 - URR1B DNA MER1_type 0 225 1 5 720 616 232 148 10 chr12 17771515 17771724 -103485806 - MT2A LTR ERVL -16 517 280 5 720 378 259 88 18 chr12 17771813 17771927 -103485603 - MTEa LTR MaLR -248 131 10 5 720 307 197 0 0 chr12 17772116 17772177 -103485353 - B3A SINE B2 -136 62 2 5 720 645 171 23 11 chr12 17772449 17772626 -103484904 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 720 282 295 35 18 chr12 17772654 17772768 -103484762 - L1MA4 LINE L1 -401 5899 5784 5 720 255 241 254 17 chr12 17773258 17773328 -103484202 + L1MC1 LINE L1 6187 6283 -50 5 720 351 0 0 0 chr12 17773328 17773367 -103484163 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 720 255 241 254 17 chr12 17773367 17773414 -103484116 + L1MC1 LINE L1 6284 6332 -1 5 720 1986 116 36 0 chr12 17773424 17773725 -103483805 + L1_Mus3 LINE L1 6279 6590 -48 5 720 702 266 23 0 chr12 17773745 17773918 -103483612 + B3A SINE B2 1 177 -21 5 720 1053 163 114 0 chr12 17775949 17776151 -103481379 + URR1A DNA MER1_type 1 225 -1 5 720 681 228 108 34 chr12 17777102 17777188 -103480342 + ID_B1 SINE B4 2 94 -130 5 720 426 39 0 0 chr12 17777188 17777240 -103480290 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 720 681 228 108 34 chr12 17777240 17777357 -103480173 + ID_B1 SINE B4 95 219 -5 5 720 198 225 24 134 chr12 17777781 17777863 -103479667 + L2c LINE L2 3303 3375 -12 5 720 198 0 0 0 chr12 17778302 17778324 -103479206 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 720 280 268 55 27 chr12 17781007 17781080 -103476450 + PB1D10 SINE Alu 29 103 -14 5 720 993 141 7 0 chr12 17781082 17781231 -103476299 + B1_Mur4 SINE Alu 1 150 0 5 720 880 203 32 42 chr12 17781279 17781495 -103476035 + ID_B1 SINE B4 3 216 -8 5 720 693 268 14 72 chr12 17782397 17782606 -103474924 + B4A SINE B4 24 220 -72 5 720 398 311 39 6 chr12 17782623 17782804 -103474726 + B3A SINE B2 2 188 -10 5 720 953 113 15 0 chr12 17782837 17782970 -103474560 + B1_Mur4 SINE Alu 3 137 -13 5 720 272 279 0 0 chr12 17783055 17783123 -103474407 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 720 2334 78 0 62 chr12 17783123 17783463 -103474067 + ORR1A2 LTR MaLR 1 319 -8 6 720 288 0 0 0 chr12 17783474 17783506 -103474024 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 720 580 290 25 19 chr12 17784206 17784364 -103473166 - RSINE1 SINE B4 -6 159 1 6 720 228 35 0 0 chr12 17784376 17784405 -103473125 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 720 356 299 29 36 chr12 17784852 17784991 -103472539 - MER33 DNA MER1_type 0 324 187 6 720 1152 186 14 5 chr12 17785041 17785263 -103472267 - URR1B DNA MER1_type -1 224 1 6 720 301 125 0 45 chr12 17785473 17785540 -103471990 + GA-rich Low_complexity Low_complexity 3 66 0 6 720 405 0 0 0 chr12 17787862 17787907 -103469623 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 720 623 176 19 13 chr12 17789039 17789194 -103468336 + CT-rich Low_complexity Low_complexity 1 156 0 6 720 497 170 9 54 chr12 17789917 17790029 -103467501 - PB1D9 SINE Alu -1 119 13 6 720 313 219 228 32 chr12 17789921 17790044 -103467486 - ID_B1 SINE B4 0 224 78 6 720 633 228 119 26 chr12 17790212 17790406 -103467124 + B3 SINE B2 5 216 0 6 720 603 212 72 22 chr12 17790441 17790613 -103466917 + ID_B1 SINE B4 44 223 -69 6 720 306 0 0 0 chr12 17790841 17790875 -103466655 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 720 270 0 0 0 chr12 17790875 17790904 -103466626 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 720 564 232 54 31 chr12 17790911 17791040 -103466490 - B1_Mur4 SINE Alu -18 132 1 6 720 772 192 24 21 chr12 17791040 17791187 -103466343 - ID_B1 SINE B4 -57 235 92 6 720 1367 152 9 13 chr12 17792602 17792829 -103464701 + URR1A DNA MER1_type 1 226 0 6 720 192 301 138 11 chr12 17793496 17793590 -103463940 - MIR SINE MIR 0 262 157 6 720 225 150 0 91 chr12 17793613 17793657 -103463873 + B4A SINE B4 167 206 -86 6 720 618 246 0 0 chr12 17793878 17793996 -103463534 + RSINE1 SINE B4 3 120 -45 6 720 206 209 0 0 chr12 17794481 17794524 -103463006 + G-rich Low_complexity Low_complexity 5 47 0 6 720 251 328 70 9 chr12 17794627 17794741 -103462789 + MIRc SINE MIR 20 140 -128 6 720 2099 119 10 10 chr12 17794747 17795061 -103462469 - MTC LTR MaLR 0 421 108 6 720 696 196 50 21 chr12 17795064 17795205 -103462325 + B1_Mur3 SINE Alu 2 146 -3 6 720 288 0 0 0 chr12 17795229 17795261 -103462269 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 720 594 191 17 9 chr12 17795264 17795380 -103462150 - MTC LTR MaLR -297 124 8 6 720 199 321 107 0 chr12 17796158 17796242 -103461288 + MIRb SINE MIR 131 223 -45 6 720 273 151 74 6 chr12 17796512 17796566 -103460964 + MTE2a LTR MaLR 1 52 -369 6 720 806 203 106 11 chr12 17796582 17796771 -103460759 - B3 SINE B2 -6 210 4 6 720 940 152 14 0 chr12 17796798 17796943 -103460587 - B1_Mus1 SINE Alu -1 147 1 6 720 1255 189 0 5 chr12 17796974 17797197 -103460333 + URR1B DNA MER1_type 1 222 -3 6 720 761 219 171 97 chr12 17797199 17797508 -103460022 + MTE2a LTR MaLR 34 365 -14 6 720 385 301 42 42 chr12 17797615 17797733 -103459797 + RSINE1 SINE B4 34 151 -14 6 720 621 38 0 0 chr12 17797744 17797824 -103459706 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 720 822 206 283 11 chr12 17799169 17799448 -103458082 - MTC LTR MaLR 0 421 67 6 720 400 250 42 0 chr12 17799479 17799575 -103457955 - B1F2 SINE Alu 0 149 50 6 720 1548 211 40 107 chr12 17799577 17800044 -103457486 - MTC-int LTR MaLR -444 926 220 6 720 866 150 0 43 chr12 17800160 17800299 -103457231 + B1_Mur4 SINE Alu 12 144 -6 6 720 339 25 0 0 chr12 17800863 17800903 -103456627 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 720 1268 85 17 6 chr12 17800903 17801080 -103456450 - B2_Mm2 SINE B2 -15 180 2 6 720 372 237 0 0 chr12 17801163 17801239 -103456291 + PB1D10 SINE Alu 41 116 -1 6 720 470 190 13 0 chr12 17801244 17801323 -103456207 + RSINE1 SINE B4 53 132 -33 6 720 504 195 41 25 chr12 17801329 17801450 -103456080 + B1F1 SINE Alu 27 149 0 6 720 1172 116 40 0 chr12 17801481 17801654 -103455876 + B2_Mm2 SINE B2 15 194 -1 6 720 534 164 0 24 chr12 17801677 17801802 -103455728 + GA-rich Low_complexity Low_complexity 1 122 0 6 720 223 208 20 20 chr12 17801978 17802027 -103455503 - B1_Mur4 SINE Alu -95 55 7 6 720 458 245 21 0 chr12 17802052 17802146 -103455384 - PB1D10 SINE Alu -8 109 14 6 720 792 246 56 6 chr12 17802231 17802411 -103455119 - B4 SINE B4 -18 274 86 6 720 903 203 26 69 chr12 17802345 17802578 -103454952 - MTC LTR MaLR -198 223 1 6 720 571 139 23 17 chr12 17802936 17803112 -103454418 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 6 720 398 286 42 83 chr12 17803703 17803920 -103453610 + MT2A LTR ERVL 74 281 -252 6 720 289 119 0 0 chr12 17803926 17803968 -103453562 + MURVY-LTR LTR ERV1 1 42 -477 6 720 1550 78 103 8 chr12 17804072 17804306 -103453224 + MURVY-LTR LTR ERV1 264 519 0 6 720 12109 287 49 44 chr12 17804352 17809555 -103447975 + MMERGLN-int LTR ERV1 45 5348 -2208 6 720 185 0 40 0 chr12 17809555 17809580 -103447950 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 720 12109 300 44 35 chr12 17809580 17809714 -103447816 + MMERGLN-int LTR ERV1 5349 5490 -2066 6 720 288 95 0 0 chr12 17809907 17809949 -103447581 + RLTR6-int LTR ERV1 7737 7778 0 6 720 279 143 0 0 chr12 17809949 17809991 -103447539 + MURVY-LTR LTR ERV1 1 42 -477 6 720 2026 54 0 8 chr12 17810113 17810373 -103447157 + MURVY-LTR LTR ERV1 262 519 0 6 720 1222 96 28 6 chr12 17811552 17811730 -103445800 + MTA_Mm LTR MaLR 4 185 -211 6 720 378 23 0 0 chr12 17811728 17811772 -103445758 + MTA_Mm LTR MaLR 352 395 -5 6 720 1220 61 0 0 chr12 17811772 17811919 -103445611 + B1_Mus2 SINE Alu 1 147 0 6 720 7309 81 46 9 chr12 17811967 17813026 -103444504 + MTA_Mm-int LTR MaLR 1 1098 0 6 720 2744 97 37 3 chr12 17813026 17813409 -103444121 + MTA_Mm LTR MaLR 1 396 0 6 720 245 139 129 0 chr12 17813611 17813678 -103443852 - L1_Mur3 LINE L1 -4488 1389 1314 6 720 438 266 19 34 chr12 17813975 17814181 -103443349 - L1_Mur3 LINE L1 -6622 1106 904 6 720 275 0 29 0 chr12 17814894 17814929 -103442601 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 6 720 604 369 53 29 chr12 17816281 17816661 -103440869 + MTD LTR MaLR 15 403 -16 6 720 246 105 0 0 chr12 17816673 17816711 -103440819 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 720 455 333 45 25 chr12 17816760 17816960 -103440570 + ORR1D-int LTR MaLR 81 284 -1296 6 720 2840 221 17 6 chr12 17817094 17817733 -103439797 - Lx4B LINE L1 -4 7054 6409 6 720 5549 83 3 3 chr12 17817734 17818481 -103439049 + L1_Mm LINE L1 4653 5399 -484 6 720 1541 221 16 16 chr12 17818477 17818863 -103438667 - Lx4B LINE L1 -650 6408 6023 6 720 2111 91 15 35 chr12 17818863 17819235 -103438295 + RLTR10A LTR ERVK 1 347 -12 6 720 1636 186 12 1 chr12 17819246 17819574 -103437956 - Lx4B LINE L1 -1030 6028 5696 6 720 814 30 0 0 chr12 17819592 17819691 -103437839 - B1_Mus2 SINE Alu -2 145 47 6 720 296 174 0 127 chr12 17819639 17819718 -103437812 - RLTR25A LTR ERVK -531 572 504 6 720 1602 319 40 44 chr12 17819769 17820473 -103437057 + ORR1D-int LTR MaLR 562 1262 -108 6 720 326 241 25 49 chr12 17820574 17820696 -103436834 - Lx4B LINE L1 -4 7054 6936 6 720 401 326 101 42 chr12 17820823 17821012 -103436518 - B3 SINE B2 -9 207 8 6 720 659 218 14 0 chr12 17821116 17821263 -103436267 + MurSatRep1 Unknown Unknown 2 150 -1987 6 720 338 306 65 0 chr12 17821265 17821389 -103436141 - B1_Mur2 SINE Alu -17 132 1 6 720 8413 191 30 28 chr12 17821389 17823237 -103434293 + MurSatRep1 Unknown Unknown 284 2135 -2 6 720 948 150 0 0 chr12 17823540 17823687 -103433843 + B1_Mus1 SINE Alu 2 148 0 6 720 1308 239 81 90 chr12 17823897 17824289 -103433241 - L1_Mur3 LINE L1 -3753 2127 1761 6 720 1181 62 7 0 chr12 17824289 17824434 -103433096 - B1_Mus1 SINE Alu -2 146 1 6 720 1308 239 81 90 chr12 17824434 17824686 -103432844 - L1_Mur3 LINE L1 -4120 1760 1489 6 720 8168 42 2 16 chr12 17824686 17824922 -103432608 - L1Md_T LINE L1 0 6582 6403 6 720 6868 59 6 3 chr12 17824922 17825775 -103431755 - RLTR13A LTR ERVK 0 855 1 6 11 39709 34 3 8 chr12 17825775 17831783 -103425747 - L1Md_T LINE L1 -180 6402 422 6 721 915 242 38 34 chr12 17831784 17832325 -103425205 - L1_Mur3 LINE L1 -4379 1501 1002 6 721 720 183 0 0 chr12 17832878 17833020 -103424510 + (TA)n Simple_repeat Simple_repeat 2 143 0 6 721 21 0 0 0 chr12 17833042 17833063 -103424467 + AT_rich Low_complexity Low_complexity 1 21 0 6 721 692 229 51 10 chr12 17833063 17833260 -103424270 - Lx2B LINE L1 -162 6814 6608 6 721 671 138 17 11 chr12 17833312 17833488 -103424042 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 6 721 430 225 0 18 chr12 17833493 17833606 -103423924 + (TA)n Simple_repeat Simple_repeat 2 112 0 6 721 716 281 75 24 chr12 17833779 17834071 -103423459 + RLTR11A2 LTR ERVK 130 436 -91 6 721 300 276 120 16 chr12 17834074 17834199 -103423331 - L1MEd LINE L1 -5186 933 796 6 721 681 123 0 0 chr12 17834199 17834305 -103423225 + (TTC)n Simple_repeat Simple_repeat 2 107 0 6 721 641 147 23 17 chr12 17834544 17834717 -103422813 + (CA)n Simple_repeat Simple_repeat 1 174 0 6 721 447 211 35 0 chr12 17834730 17834901 -103422629 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 721 547 181 31 0 chr12 17834926 17835086 -103422444 + (CA)n Simple_repeat Simple_repeat 1 165 0 6 721 246 235 49 12 chr12 17835090 17835172 -103422358 - L1_Rod LINE L1 -16 5831 5747 6 721 402 281 17 52 chr12 17835436 17835609 -103421921 - RNLTR23 LTR ERVK 0 642 476 6 721 287 207 252 25 chr12 17836106 17836225 -103421305 + L1MC1 LINE L1 6187 6332 -1 6 721 2116 99 96 0 chr12 17836235 17836558 -103420972 + L1_Mus3 LINE L1 6279 6632 -6 6 721 659 281 26 0 chr12 17836577 17836730 -103420800 + B3A SINE B2 12 168 -30 6 721 256 269 137 27 chr12 17837126 17837313 -103420217 + MIR SINE MIR 2 208 -60 6 721 315 0 0 0 chr12 17837929 17837964 -103419566 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 721 333 0 0 0 chr12 17837964 17838000 -103419530 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 721 193 315 83 45 chr12 17839622 17839755 -103417775 - L2a LINE L2 -191 3235 3098 6 721 12421 96 13 11 chr12 17840024 17841846 -103415684 - L1_Mm LINE L1 -2029 3854 2031 6 721 6183 85 15 10 chr12 17841846 17842716 -103414814 - RLTR13D6 LTR ERVK -28 874 1 6 721 5392 115 13 3 chr12 17842720 17843899 -103413631 - L1VL4 LINE L1 -1859 1839 712 6 721 28003 70 111 15 chr12 17843888 17849589 -103407941 - L1Md_F2 LINE L1 -2 6580 284 6 721 1477 133 17 0 chr12 17849590 17849831 -103407699 - L1Md_F LINE L1 -5647 872 628 6 721 334 310 9 0 chr12 17849822 17849935 -103407595 - L1Md_F LINE L1 -5795 724 611 6 721 469 274 48 118 chr12 17849948 17850176 -103407354 - L1VL4 LINE L1 -6147 275 64 6 721 345 294 21 29 chr12 17850726 17850866 -103406664 - MER33 DNA MER1_type 0 324 186 6 721 1156 207 14 5 chr12 17850914 17851137 -103406393 - URR1B DNA MER1_type 0 225 1 6 721 270 0 0 0 chr12 17851357 17851387 -103406143 + (GGA)n Simple_repeat Simple_repeat 1 30 0 7 721 459 0 0 0 chr12 17853774 17853825 -103403705 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 721 803 146 23 6 chr12 17854770 17854942 -103402588 + CT-rich Low_complexity Low_complexity 2 176 0 7 721 772 222 93 11 chr12 17855381 17855563 -103401967 - B3 SINE B2 -17 199 3 7 721 198 0 0 0 chr12 17855576 17855598 -103401932 + (T)n Simple_repeat Simple_repeat 1 22 0 7 721 915 159 14 0 chr12 17855611 17855756 -103401774 - B1_Mus1 SINE Alu -1 147 1 7 721 676 298 104 68 chr12 17855761 17855787 -103401743 + MTE2a LTR MaLR 56 78 -341 7 721 1222 198 0 5 chr12 17855787 17856010 -103401520 + URR1B DNA MER1_type 1 222 -3 7 721 787 241 128 78 chr12 17856010 17856321 -103401209 + MTE2a LTR MaLR 58 405 -14 7 721 2644 136 7 5 chr12 17856413 17856821 -103400709 - RLTR9E LTR ERVK 0 409 1 7 721 449 194 20 61 chr12 17856884 17856898 -103400632 - B3A SINE B2 -101 97 89 7 721 186 43 0 0 chr12 17856898 17856921 -103400609 + (TC)n Simple_repeat Simple_repeat 2 24 0 7 721 596 107 0 0 chr12 17856921 17857005 -103400525 - B2_Mm2 SINE B2 -109 86 3 7 721 355 279 0 0 chr12 17857080 17857166 -103400364 + PB1D10 SINE Alu 32 117 0 7 721 417 235 12 0 chr12 17857160 17857245 -103400285 + RSINE1 SINE B4 42 127 -38 7 721 440 278 22 22 chr12 17857236 17857372 -103400158 + B1F1 SINE Alu 13 148 -1 7 721 685 194 28 43 chr12 17857404 17857590 -103399940 + B3 SINE B2 15 195 0 7 721 801 224 30 18 chr12 17858157 17858321 -103399209 - B3A SINE B2 -30 168 3 7 721 211 292 67 30 chr12 17858401 17858535 -103398995 + L2c LINE L2 3038 3176 -211 7 721 355 294 28 0 chr12 17858704 17858813 -103398717 + PB1D7 SINE Alu 3 114 -6 7 721 286 336 8 41 chr12 17858821 17858942 -103398588 - MIRb SINE MIR -150 118 2 7 721 867 319 39 28 chr12 17860148 17860432 -103397098 + B4A SINE B4 6 292 0 7 721 987 142 168 0 chr12 17860715 17860905 -103396625 - URR1B DNA MER1_type 0 225 4 7 721 180 352 42 0 chr12 17861481 17861552 -103395978 + MIRc SINE MIR 86 159 -109 7 721 248 331 83 21 chr12 17861559 17861704 -103395826 - RMER15 LTR ERVL -6 569 416 7 721 320 269 3 30 chr12 17861951 17862057 -103395473 - MT2A LTR ERVL -496 105 3 7 721 845 274 12 30 chr12 17862551 17862841 -103394689 - MTE2a LTR MaLR -5 374 35 7 721 888 167 183 0 chr12 17862841 17863027 -103394503 + URR1A DNA MER1_type 1 220 -6 7 721 1609 140 14 10 chr12 17863509 17863764 -103393766 + RLTR10E LTR ERVK 1 262 -95 7 721 1179 194 128 36 chr12 17863764 17864068 -103393462 + IAPEY3_LTR LTR ERVK 1 332 0 7 721 6992 68 42 42 chr12 17864068 17865060 -103392470 + RLTR10-int LTR ERVK 1 992 -995 7 721 357 175 0 0 chr12 17865246 17865303 -103392227 + IAP-d-int LTR ERVK 447 503 -6039 7 721 1469 120 107 0 chr12 17865303 17865528 -103392002 + IAP-d-int LTR ERVK 5007 5255 -1287 7 721 1554 128 95 33 chr12 17865528 17865844 -103391686 + IAPEY3-int LTR ERVK 6965 7337 -343 7 721 1391 207 55 15 chr12 17865862 17866205 -103391325 + IAP-d-int LTR ERVK 6125 6481 0 7 721 1142 208 128 36 chr12 17866205 17866509 -103391021 + IAPEY3_LTR LTR ERVK 1 332 0 7 721 711 121 0 0 chr12 17866509 17866608 -103390922 + RLTR10B2 LTR ERVK 266 364 -1 7 721 593 70 47 0 chr12 17866608 17866694 -103390836 + MMERVK10C-int LTR ERVK 3 92 -7489 7 721 289 125 0 0 chr12 17866695 17866735 -103390795 + RLTR27 LTR ERVK 231 270 -39 7 721 1561 105 0 0 chr12 17866737 17866946 -103390584 + MMERVK10C-int LTR ERVK 222 430 -7151 7 721 14419 80 2 10 chr12 17866988 17868869 -103388661 + MMERVK10C-int LTR ERVK 407 2271 -5310 7 721 32673 75 2 2 chr12 17868857 17872983 -103384547 + MMERVK10C-int LTR ERVK 2158 6282 -1299 7 721 4464 20 0 0 chr12 17872983 17873476 -103384054 - MT2_Mm LTR ERVL 0 493 1 7 721 319 0 0 0 chr12 17873476 17873514 -103384016 - MERVL-int LTR ERVL 0 5485 5448 7 721 384 179 46 35 chr12 17873514 17873601 -103383929 - ORR1A3-int LTR MaLR -1323 640 553 7 721 34788 18 0 1 chr12 17873601 17877432 -103380098 - MERVL-int LTR ERVL -125 5360 1531 7 721 2944 131 89 48 chr12 17877432 17877993 -103379537 - RLTR6_Mm LTR ERV1 -70 584 1 7 721 22554 92 35 49 chr12 17877993 17881783 -103375747 - MMVL30-int LTR ERV1 0 3698 1 7 721 3090 130 86 47 chr12 17881784 17882365 -103375165 - RLTR6_Mm LTR ERV1 -50 604 1 7 721 13864 13 0 1 chr12 17882365 17883900 -103373630 - MERVL-int LTR ERVL -3951 1534 1 7 721 1943 92 9 16 chr12 17883900 17884192 -103373338 - MT2_Mm LTR ERVL 0 493 237 7 721 1428 40 0 0 chr12 17884192 17884368 -103373162 - MMERVK10C-int LTR ERVK -1128 6453 6278 7 721 4356 19 12 0 chr12 17884368 17884855 -103372675 + MT2_Mm LTR ERVL 1 493 0 7 721 4032 103 19 10 chr12 17884855 17885699 -103371831 + IAPEY3-int LTR ERVK 6803 7680 0 7 721 2248 116 0 10 chr12 17885699 17886013 -103371517 + RLTR10E LTR ERVK 1 311 0 7 721 832 159 7 14 chr12 17886441 17886581 -103370949 - B1_Mur3 SINE Alu -6 143 5 7 721 368 235 12 0 chr12 17886704 17886785 -103370745 + ID2 SINE ID 2 83 0 7 721 885 117 0 0 chr12 17886842 17887045 -103370485 + (TG)n Simple_repeat Simple_repeat 1 203 0 7 721 483 33 0 0 chr12 17892062 17892123 -103365407 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 721 290 250 35 172 chr12 17892140 17892285 -103365245 - B4A SINE B4 -39 126 1 7 721 281 370 15 30 chr12 17893875 17894006 -103363524 - MER3 DNA MER1_type -78 131 3 7 721 254 333 52 0 chr12 17894071 17894167 -103363363 + MER5A1 DNA MER1_type 66 166 0 7 721 218 241 22 67 chr12 17894241 17894330 -103363200 - MER5B DNA MER1_type -62 116 32 7 721 543 233 137 30 chr12 17894747 17894915 -103362615 - B3A SINE B2 -10 188 3 7 721 276 20 0 89 chr12 17895179 17895235 -103362295 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 721 1083 84 7 0 chr12 17895235 17895378 -103362152 - B1_Mm SINE Alu -3 144 1 7 721 823 200 173 0 chr12 17895430 17895655 -103361875 + Lx9 LINE L1 7381 7644 0 7 721 718 264 66 24 chr12 17895991 17896204 -103361326 - ID_B1 SINE B4 -2 222 1 7 721 263 276 203 8 chr12 17896517 17896645 -103360885 + Lx8 LINE L1 6979 7131 -342 7 721 375 160 32 0 chr12 17896708 17896802 -103360728 + GA-rich Low_complexity Low_complexity 3 99 0 7 721 270 240 132 19 chr12 17896833 17896939 -103360591 + Lx8 LINE L1 7354 7471 -2 7 721 198 100 0 104 chr12 17897011 17897078 -103360452 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 7 721 370 293 59 89 chr12 17897117 17897353 -103360177 + MT2A LTR ERVL 74 302 -231 7 721 2940 127 28 26 chr12 17897930 17898430 -103359100 - RMER17D LTR ERVK -2 887 387 7 721 597 14 0 0 chr12 17898430 17898500 -103359030 + (GGAGA)n Simple_repeat Simple_repeat 2 71 0 7 721 2576 199 224 28 chr12 17898500 17898763 -103358767 - RMER17D LTR ERVK -559 347 2 7 721 351 276 158 28 chr12 17899343 17899806 -103357724 - L1_Mur3 LINE L1 -4044 1836 1314 7 721 404 264 57 48 chr12 17900103 17900330 -103357200 - L1_Mur3 LINE L1 -6622 1106 878 7 721 204 40 0 0 chr12 17901611 17901636 -103355894 + (T)n Simple_repeat Simple_repeat 1 25 0 7 721 289 366 50 35 chr12 17902544 17902736 -103354794 + MTD LTR MaLR 15 209 -212 7 721 2085 144 71 21 chr12 17902736 17903043 -103354487 - RLTR9D LTR ERVK -2 401 72 7 721 3285 46 5 5 chr12 17903043 17903439 -103354091 + MTA_Mm LTR MaLR 1 396 0 7 721 2085 144 71 21 chr12 17903439 17903513 -103354017 - RLTR9D LTR ERVK -332 71 1 7 721 416 315 103 16 chr12 17903522 17903706 -103353824 + MTD LTR MaLR 204 403 -16 7 721 546 343 57 50 chr12 17903790 17904069 -103353461 + ORR1D-int LTR MaLR 81 361 -1219 7 721 5904 233 22 9 chr12 17904099 17905499 -103352031 - Lx4B LINE L1 -4 7054 5637 7 721 1551 325 37 41 chr12 17905540 17906217 -103351313 + ORR1D-int LTR MaLR 589 1262 -108 7 721 262 233 33 49 chr12 17906320 17906442 -103351088 - Lx4B LINE L1 -4 7054 6935 7 721 296 307 106 77 chr12 17906557 17906765 -103350765 - B3 SINE B2 0 216 3 7 721 8189 190 98 28 chr12 17906859 17907008 -103350522 + MurSatRep1 Unknown Unknown 2 175 -1962 7 721 343 314 65 0 chr12 17907008 17907132 -103350398 - B1_Mur2 SINE Alu -17 132 1 7 721 8189 190 98 28 chr12 17907132 17907975 -103349555 + MurSatRep1 Unknown Unknown 176 1118 -1019 7 721 1398 94 5 0 chr12 17907975 17908166 -103349364 - B2_Mm1a SINE B2 0 193 2 7 721 8189 190 98 28 chr12 17908166 17909165 -103348365 + MurSatRep1 Unknown Unknown 1119 2134 -3 7 721 452 306 74 48 chr12 17909206 17909614 -103347916 + MurSatRep1 Unknown Unknown 1691 1925 -212 7 721 458 288 0 0 chr12 17909614 17909753 -103347777 + MMSAT4 Satellite Satellite 30 168 0 7 721 452 306 74 48 chr12 17909753 17910034 -103347496 + MurSatRep1 Unknown Unknown 1926 2087 -50 7 721 442 295 0 0 chr12 17910034 17910173 -103347357 + MMSAT4 Satellite Satellite 30 168 0 7 721 452 306 74 48 chr12 17910173 17910259 -103347271 + MurSatRep1 Unknown Unknown 2088 2137 0 7 721 377 273 33 14 chr12 17910202 17910503 -103347027 + MMSAT4 Satellite Satellite 1 306 0 7 721 2881 109 5 2 chr12 17910553 17910957 -103346573 + L1_Mus1 LINE L1 6163 6567 0 7 721 320 314 39 0 chr12 17910974 17911174 -103346356 + MMSAT4 Satellite Satellite 1 207 0 7 721 254 346 66 28 chr12 17911174 17911262 -103346268 + MurSatRep1 Unknown Unknown 1751 2049 -88 7 721 241 294 25 25 chr12 17911207 17911329 -103346201 + MMSAT4 Satellite Satellite 35 156 -12 7 721 330 269 0 0 chr12 17911469 17911547 -103345983 + ORR1C2 LTR MaLR 293 370 -14 7 721 895 152 14 0 chr12 17911842 17911987 -103345543 + B1_Mus1 SINE Alu 2 148 0 7 721 1446 242 86 14 chr12 17912242 17912812 -103344718 - L1_Mur3 LINE L1 -3798 2082 1472 7 721 30 27 0 0 chr12 17912877 17912914 -103344616 + AT_rich Low_complexity Low_complexity 1 37 0 7 721 585 223 71 10 chr12 17912925 17913096 -103344434 - Lx2B LINE L1 -212 6796 6623 7 721 505 163 15 0 chr12 17913205 17913340 -103344190 + (TA)n Simple_repeat Simple_repeat 2 138 0 7 721 405 0 0 0 chr12 17913427 17913472 -103344058 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 721 27 29 0 0 chr12 17913497 17913531 -103343999 + AT_rich Low_complexity Low_complexity 1 34 0 7 721 600 232 53 7 chr12 17913570 17913722 -103343808 - Lx2B LINE L1 -217 6783 6625 7 721 413 191 17 11 chr12 17913781 17913956 -103343574 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 7 721 274 168 10 29 chr12 17913972 17914076 -103343454 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 7 721 704 301 39 116 chr12 17914249 17914459 -103343071 + RLTR11A2 LTR ERVK 134 347 -180 7 721 1084 67 0 0 chr12 17914459 17914593 -103342937 + B1_Mm SINE Alu 1 134 -13 7 721 704 301 39 116 chr12 17914593 17914717 -103342813 + RLTR11A2 LTR ERVK 348 442 -85 7 721 219 157 35 65 chr12 17914728 17914898 -103342632 + (TTA)n Simple_repeat Simple_repeat 2 166 0 7 721 485 182 13 13 chr12 17915125 17915275 -103342255 + (CA)n Simple_repeat Simple_repeat 1 150 0 7 721 240 229 28 0 chr12 17915294 17915403 -103342127 + (CA)n Simple_repeat Simple_repeat 2 113 0 7 721 524 186 29 11 chr12 17915414 17915588 -103341942 + (CA)n Simple_repeat Simple_repeat 1 177 0 7 721 396 211 259 19 chr12 17916078 17916346 -103341184 + L1MC1 LINE L1 6002 6333 0 7 721 1428 70 5 11 chr12 17916357 17916544 -103340986 + B2_Mm1t SINE B2 2 187 -6 7 721 2275 97 41 6 chr12 17916554 17916896 -103340634 + L1_Mus3 LINE L1 6279 6632 -6 7 721 689 247 31 6 chr12 17916903 17917066 -103340464 + B3A SINE B2 2 168 -30 7 721 182 359 48 57 chr12 17917169 17917293 -103340237 - L2b LINE L2 -15 3360 3238 7 721 259 271 126 35 chr12 17917455 17917642 -103339888 + MIRb SINE MIR 3 202 -66 8 721 349 189 10 10 chr12 17918221 17918317 -103339213 + (CA)n Simple_repeat Simple_repeat 1 96 0 8 721 312 245 149 0 chr12 17921675 17921761 -103335769 + PB1D10 SINE Alu 6 105 -12 8 721 781 207 0 0 chr12 17921761 17921911 -103335619 + B1_Mur4 SINE Alu 1 150 0 8 721 872 226 9 41 chr12 17921962 17922183 -103335347 + ID_B1 SINE B4 3 216 -8 8 721 679 263 14 72 chr12 17923076 17923285 -103334245 + B4A SINE B4 24 220 -72 8 721 332 304 151 23 chr12 17923302 17923474 -103334056 + B3A SINE B2 2 195 -3 8 721 906 161 0 0 chr12 17923495 17923632 -103333898 + B1_Mur4 SINE Alu 1 137 -13 8 721 291 254 0 0 chr12 17923712 17923779 -103333751 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 721 2169 110 0 70 chr12 17923779 17924122 -103333408 + ORR1A2 LTR MaLR 1 319 -8 8 721 6824 71 32 7 chr12 17924897 17925803 -103331727 - RLTR13B3 LTR ERVK 0 929 1 8 721 17918 101 29 29 chr12 17925821 17927591 -103329939 - ETnERV3-int LTR ERVK -32 5776 4010 8 721 465 62 0 0 chr12 17927591 17927656 -103329874 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 8 721 17918 101 29 29 chr12 17927656 17928678 -103328852 - ETnERV3-int LTR ERVK -1799 4009 2984 8 721 321 47 0 0 chr12 17930115 17930158 -103327372 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 721 786 144 12 12 chr12 17931141 17931303 -103326227 + CT-rich Low_complexity Low_complexity 3 164 0 8 721 318 264 45 1 chr12 17932035 17932138 -103325392 - B1_Mur4 SINE Alu -7 113 9 8 721 661 231 113 26 chr12 17932316 17932511 -103325019 + B3 SINE B2 5 216 0 8 721 395 218 89 18 chr12 17932572 17932684 -103324846 + ID_B1 SINE B4 79 198 -26 8 721 674 117 0 0 chr12 17932587 17932690 -103324840 + B1_Mus1 SINE Alu 23 125 -23 8 721 293 125 0 0 chr12 17932690 17932732 -103324798 + B1_Mus2 SINE Alu 96 137 -10 8 721 269 26 0 26 chr12 17932732 17932771 -103324759 + (CAA)n Simple_repeat Simple_repeat 2 39 0 8 721 598 218 60 0 chr12 17932786 17932919 -103324611 + ID_B1 SINE B4 82 222 -2 8 721 182 185 31 0 chr12 17933121 17933186 -103324344 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 8 721 591 193 81 32 chr12 17933204 17933327 -103324203 - B1_Mur3 SINE Alu -12 137 9 8 721 210 268 52 35 chr12 17933276 17933334 -103324196 - B4A SINE B4 -150 142 84 8 721 680 194 8 8 chr12 17933357 17933482 -103324048 - ID_B1 SINE B4 -8 216 92 8 721 9857 59 2 3 chr12 17933508 17935458 -103322072 - L1Md_F2 LINE L1 -12 6570 4623 8 721 2235 106 15 9 chr12 17935459 17935784 -103321746 + IAPLTR2b LTR ERVK 1 327 0 8 721 970 139 25 86 chr12 17935785 17935982 -103321548 + IAPEz-int LTR ERVK 9 193 -6288 8 721 246 327 0 0 chr12 17935982 17936037 -103321493 + RLTR27 LTR ERVK 221 275 -34 8 721 3581 67 1 5 chr12 17936037 17936609 -103320921 + IAPEz-int LTR ERVK 168 662 -5819 8 721 2191 86 0 0 chr12 17936609 17936887 -103320643 + IAPEz-int LTR ERVK 1359 1636 -4845 8 721 6102 50 5 13 chr12 17936886 17937636 -103319894 + IAPEz-int LTR ERVK 5736 6479 -2 8 721 2235 106 15 9 chr12 17937638 17937963 -103319567 + IAPLTR2b LTR ERVK 1 327 0 8 721 2908 112 2 5 chr12 17937963 17938393 -103319137 - L1_Mm LINE L1 -1256 4627 4199 8 721 1255 161 13 22 chr12 17939826 17940054 -103317476 + URR1A DNA MER1_type 1 226 0 8 721 211 202 146 37 chr12 17940773 17940855 -103316675 - MIR SINE MIR -82 180 90 8 721 686 258 55 30 chr12 17940858 17941058 -103316472 + B4A SINE B4 2 206 -86 8 721 648 256 0 0 chr12 17941286 17941411 -103316119 + RSINE1 SINE B4 3 127 -38 8 721 226 329 0 26 chr12 17941550 17941628 -103315902 - MER2 DNA MER2_type -263 82 7 8 721 210 154 0 25 chr12 17942087 17942127 -103315403 + G-rich Low_complexity Low_complexity 3 41 0 8 721 197 269 106 44 chr12 17942241 17942354 -103315176 + MIRc SINE MIR 20 139 -129 8 721 2201 152 10 146 chr12 17942357 17942674 -103314856 - MTC LTR MaLR 0 421 115 8 721 671 174 70 28 chr12 17942674 17942816 -103314714 + B1_Mur3 SINE Alu 2 149 0 8 721 2201 152 10 146 chr12 17942816 17942872 -103314658 - MTC LTR MaLR -307 114 114 8 721 564 36 24 12 chr12 17942872 17942956 -103314574 + (GA)n Simple_repeat Simple_repeat 2 86 0 8 721 2201 152 10 146 chr12 17942956 17943068 -103314462 - MTC LTR MaLR -307 114 1 8 721 273 151 74 6 chr12 17944161 17944215 -103313315 + MTE2a LTR MaLR 1 52 -369 8 721 31 0 0 0 chr12 17944217 17944248 -103313282 + AT_rich Low_complexity Low_complexity 1 31 0 8 721 827 212 99 11 chr12 17944257 17944448 -103313082 - B3 SINE B2 -6 210 3 8 721 880 179 14 0 chr12 17944477 17944622 -103312908 - B1_Mus1 SINE Alu -1 147 1 8 721 1359 167 0 5 chr12 17944653 17944876 -103312654 + URR1B DNA MER1_type 1 222 -3 8 721 791 245 118 85 chr12 17944876 17945197 -103312333 + MTE2a LTR MaLR 44 375 -4 8 721 328 286 55 0 chr12 17945307 17945398 -103312132 + RSINE1 SINE B4 42 137 -28 8 721 234 0 0 0 chr12 17945419 17945445 -103312085 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 721 588 14 0 0 chr12 17945445 17945513 -103312017 + (GA)n Simple_repeat Simple_repeat 1 69 0 8 721 2632 115 10 10 chr12 17946881 17947284 -103310246 - RLTR9E LTR ERVK -6 403 1 8 721 369 0 0 0 chr12 17947371 17947412 -103310118 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 721 321 47 0 0 chr12 17947412 17947454 -103310076 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 721 465 169 12 0 chr12 17947468 17947551 -103309979 - B2_Mm2 SINE B2 -109 86 3 8 721 314 286 0 0 chr12 17947633 17947710 -103309820 + PB1D10 SINE Alu 40 116 -1 8 721 4182 52 82 0 chr12 17947987 17948508 -103309022 - LTRIS2 LTR ERV1 0 564 1 8 721 419 126 0 40 chr12 17948716 17948815 -103308715 + G-rich Low_complexity Low_complexity 2 96 0 8 721 667 194 39 0 chr12 17949153 17949282 -103308248 + B1_Mus1 SINE Alu 3 136 -12 8 721 456 35 0 0 chr12 17949282 17949340 -103308190 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 8 721 273 319 98 32 chr12 17949374 17949497 -103308033 + MLT1F2 LTR MaLR 146 276 -284 8 721 810 214 88 5 chr12 17949796 17949989 -103307541 + B3 SINE B2 3 211 -5 8 721 441 214 157 33 chr12 17950015 17950136 -103307394 + B1_Mur2 SINE Alu 1 136 -13 8 721 1224 69 12 0 chr12 17950141 17950386 -103307144 + (GA)n Simple_repeat Simple_repeat 1 248 0 8 721 549 148 0 0 chr12 17950537 17950665 -103306865 + (TC)n Simple_repeat Simple_repeat 2 129 0 8 721 225 0 0 0 chr12 17950665 17950690 -103306840 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 721 769 264 13 43 chr12 17953430 17953660 -103303870 + ID_B1 SINE B4 2 224 0 8 721 885 95 79 0 chr12 17953688 17953814 -103303716 + B1_Mus1 SINE Alu 1 136 -12 8 721 186 133 0 0 chr12 17953886 17953916 -103303614 + (TC)n Simple_repeat Simple_repeat 2 31 0 8 721 488 347 47 9 chr12 17953959 17954174 -103303356 - L1MD LINE L1 -540 5819 5597 8 721 410 255 189 0 chr12 17954231 17954337 -103303193 - RSINE1 SINE B4 -36 129 4 8 721 4491 124 14 56 chr12 17954344 17955188 -103302342 + RMER17D2 LTR ERVK 1 809 0 8 721 1282 196 172 164 chr12 17955289 17955517 -103302013 - MT2A LTR ERVL -71 462 160 8 721 1572 47 0 35 chr12 17955517 17955716 -103301814 - B2_Mm1a SINE B2 -1 192 1 8 721 1282 196 172 164 chr12 17955716 17955945 -103301585 - MT2A LTR ERVL -374 159 1 8 721 418 269 82 0 chr12 17955946 17956080 -103301450 - L1MD LINE L1 -676 5566 5422 8 721 765 251 15 25 chr12 17956097 17956266 -103301264 + B3A SINE B2 1 171 -27 8 721 405 0 0 0 chr12 17956266 17956311 -103301219 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 721 420 20 0 0 chr12 17956311 17956360 -103301170 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 721 765 251 15 25 chr12 17956360 17956389 -103301141 + B3A SINE B2 172 197 -1 8 721 542 267 76 70 chr12 17956431 17956616 -103300914 - B3 SINE B2 -23 193 8 8 721 819 137 0 67 chr12 17956715 17956864 -103300666 - B1_Mus1 SINE Alu 0 148 10 8 722 283 77 0 0 chr12 17957255 17957294 -103300236 - B2_Mm1t SINE B2 -154 39 1 8 722 268 270 52 35 chr12 17957439 17957554 -103299976 - L2c LINE L2 -53 3334 3218 8 722 895 157 0 25 chr12 17958085 17958242 -103299288 - MTC LTR MaLR -33 388 236 8 722 1428 55 22 0 chr12 17958242 17958424 -103299106 + B2_Mm1t SINE B2 2 187 -6 8 722 507 31 0 15 chr12 17958437 17958502 -103299028 + B2_Mm2 SINE B2 3 66 -129 8 722 224 219 152 76 chr12 17958502 17958516 -103299014 + B4 SINE B4 3 87 -205 8 722 1233 138 99 22 chr12 17958526 17958749 -103298781 - MTC LTR MaLR -179 242 3 8 722 372 298 16 24 chr12 17958787 17958914 -103298616 - HAL1-2a_MD LINE L1 -495 2529 2404 8 722 188 245 38 0 chr12 17959102 17959155 -103298375 - MIRc SINE MIR -129 139 85 8 722 657 181 205 90 chr12 17959208 17959408 -103298122 + URR1B DNA MER1_type 2 224 -1 8 722 1022 237 0 0 chr12 17959447 17959658 -103297872 - B3 SINE B2 -4 212 2 8 722 248 304 0 61 chr12 17960605 17960703 -103296827 + MLT1K LTR MaLR 504 595 0 8 722 1410 280 14 32 chr12 17962922 17962955 -103294575 + ORR1D2 LTR MaLR 1 33 -337 8 722 1077 140 91 14 chr12 17962955 17963165 -103294365 - URR1A DNA MER1_type 0 226 1 8 722 1410 280 14 32 chr12 17963165 17963500 -103294030 + ORR1D2 LTR MaLR 34 362 -8 8 722 16251 52 0 5 chr12 17963506 17966440 -103291090 + L1Md_Gf LINE L1 304 3319 -2567 8 722 2692 43 9 6 chr12 17966440 17966766 -103290764 + IAPLTR2b LTR ERVK 1 327 0 8 722 1106 126 10 80 chr12 17966767 17966966 -103290564 + IAPEz-int LTR ERVK 9 193 -6288 8 722 246 327 0 0 chr12 17966966 17967021 -103290509 + RLTR27 LTR ERVK 221 275 -34 8 722 885 77 8 0 chr12 17967021 17967138 -103290392 + IAPEz-int LTR ERVK 168 285 -6196 8 722 53261 35 14 9 chr12 17967138 17973375 -103284155 + IAPEz-int LTR ERVK 211 6479 -2 8 722 2678 46 9 6 chr12 17973377 17973703 -103283827 + IAPLTR2b LTR ERVK 1 327 0 8 722 19646 25 0 0 chr12 17973703 17975978 -103281552 + L1Md_T LINE L1 3311 5586 -297 8 722 8415 39 7 0 chr12 17975978 17976967 -103280563 + L1Md_T LINE L1 5587 6582 0 8 722 278 339 35 0 chr12 17977177 17977292 -103280238 - RMER15 LTR ERVL -16 559 441 8 722 1668 253 42 2 chr12 17977292 17977692 -103279838 + MTD LTR MaLR 1 416 -3 8 722 601 251 90 38 chr12 17978736 17978947 -103278583 - ID_B1 SINE B4 0 224 3 8 722 316 240 83 26 chr12 17979587 17979718 -103277812 + B3 SINE B2 8 154 -41 8 722 498 61 0 0 chr12 17979738 17979804 -103277726 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 722 478 210 1 11 chr12 17979831 17979934 -103277596 + B1_Mur2 SINE Alu 7 109 -40 8 722 527 274 17 0 chr12 17980141 17980258 -103277272 + RSINE1 SINE B4 3 121 -44 8 722 1285 95 16 0 chr12 17980259 17980448 -103277082 + B2_Mm2 SINE B2 1 192 -3 9 722 23 33 0 0 chr12 17980542 17980572 -103276958 + AT_rich Low_complexity Low_complexity 1 30 0 9 722 198 150 0 0 chr12 17980603 17980643 -103276887 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 9 722 328 250 13 13 chr12 17981125 17981202 -103276328 + ID2 SINE ID 2 78 -5 9 722 387 0 0 0 chr12 17981412 17981455 -103276075 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 722 420 286 123 82 chr12 17981585 17981903 -103275627 - ORR1E LTR MaLR 0 370 1 9 722 1032 150 0 0 chr12 17982138 17982285 -103275245 - B1_Mur1 SINE Alu 0 149 3 9 722 278 309 82 31 chr12 17982373 17982470 -103275060 + RSINE1 SINE B4 51 152 -13 9 722 1465 83 0 5 chr12 17982540 17982733 -103274797 + B2_Mm2 SINE B2 1 192 -3 9 722 2441 137 16 45 chr12 17983362 17983789 -103273741 - MTC LTR MaLR -6 415 1 9 722 531 288 53 0 chr12 17984806 17984938 -103272592 - RSINE1 SINE B4 -6 159 21 9 722 248 266 74 25 chr12 17985236 17985310 -103272220 + B4A SINE B4 3 80 -212 9 722 422 86 0 0 chr12 17985310 17985368 -103272162 + RMER6D LTR ERVK 1 58 -662 9 722 353 200 0 0 chr12 17985620 17985680 -103271850 + B3 SINE B2 70 129 -87 9 722 611 252 0 13 chr12 17986133 17986282 -103271248 - B1_Mm SINE Alu 0 147 1 9 722 728 59 10 0 chr12 17986460 17986562 -103270968 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 9 722 1496 208 89 86 chr12 17986697 17987056 -103270474 + MTD LTR MaLR 13 376 -43 9 722 725 175 33 53 chr12 17987056 17987207 -103270323 - B1_Mus1 SINE Alu 0 148 1 9 722 1496 208 89 86 chr12 17987207 17987253 -103270277 + MTD LTR MaLR 377 419 0 9 722 200 297 0 0 chr12 17987376 17987440 -103270090 + (TA)n Simple_repeat Simple_repeat 2 65 0 9 722 290 139 0 0 chr12 17987474 17987517 -103270013 + MTC LTR MaLR 92 134 -287 9 722 457 68 13 13 chr12 17988059 17988134 -103269396 + (TG)n Simple_repeat Simple_repeat 1 75 0 9 722 648 285 92 42 chr12 17988163 17988401 -103269129 - B4A SINE B4 -38 254 5 9 722 537 260 81 0 chr12 17988541 17988664 -103268866 + ETnERV2-int LTR ERVK 7070 7202 -204 9 722 303 298 117 39 chr12 17989096 17989318 -103268212 + L2b LINE L2 3004 3242 -184 9 722 546 285 37 115 chr12 17989323 17989541 -103267989 + ID_B1 SINE B4 2 202 -22 9 722 241 222 153 0 chr12 17989773 17989845 -103267685 - MER5A1 DNA MER1_type -71 95 13 9 722 1075 158 5 5 chr12 17990340 17990499 -103267031 + B2_Mm1a SINE B2 1 160 -33 9 722 249 57 0 0 chr12 17990499 17990534 -103266996 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 9 722 1075 158 5 5 chr12 17990534 17990558 -103266972 + B2_Mm1a SINE B2 161 183 -10 9 722 513 176 37 0 chr12 17990777 17990885 -103266645 - Lx3B LINE L1 0 6973 6862 9 722 1002 79 43 0 chr12 17991425 17991564 -103265966 + B1_Mm SINE Alu 3 147 0 9 722 788 182 12 0 chr12 17991564 17991729 -103265801 + GA-rich Low_complexity Low_complexity 3 169 0 9 722 383 228 92 35 chr12 17992343 17992484 -103265046 - B1F SINE Alu 0 149 1 9 722 1161 308 84 113 chr12 17992851 17993565 -103263965 - MER63C DNA AcHobo -5 925 233 9 722 754 150 23 8 chr12 17993869 17993997 -103263533 + B1_Mur2 SINE Alu 14 143 -6 9 722 684 243 57 62 chr12 17994138 17994331 -103263199 + B3 SINE B2 10 201 -15 9 722 261 277 0 0 chr12 17994352 17994453 -103263077 + (TG)n Simple_repeat Simple_repeat 2 102 0 9 722 534 214 0 30 chr12 17994468 17994569 -103262961 + B3 SINE B2 2 99 -117 9 722 1132 89 0 0 chr12 17994569 17994715 -103262815 + B1_Mus1 SINE Alu 2 147 -1 9 722 217 147 40 0 chr12 17994719 17994794 -103262736 + A-rich Low_complexity Low_complexity 2 79 0 9 722 354 191 16 0 chr12 17994800 17994863 -103262667 + B3 SINE B2 89 152 -64 9 722 474 259 9 0 chr12 17995755 17995867 -103261663 - PB1D9 SINE Alu -6 114 2 9 722 1170 62 0 20 chr12 17995917 17996066 -103261464 + B1_Mus2 SINE Alu 2 147 0 9 722 1601 216 80 8 chr12 17996483 17996870 -103260660 - MTD LTR MaLR 0 419 5 9 722 505 350 34 8 chr12 17997097 17997333 -103260197 - MER46C DNA MER2_type -1 337 96 9 722 800 204 0 14 chr12 17997354 17997498 -103260032 - B1_Mur3 SINE Alu -6 143 2 9 722 319 259 12 0 chr12 17997617 17997698 -103259832 + ID2 SINE ID 2 83 0 9 722 300 182 0 0 chr12 17997761 17997849 -103259681 + (TG)n Simple_repeat Simple_repeat 1 88 0 9 722 329 94 0 54 chr12 17997849 17997905 -103259625 - HAL1-3A_ME LINE L1 -831 2027 1975 9 722 537 117 0 0 chr12 17997913 17998062 -103259468 + (TG)n Simple_repeat Simple_repeat 1 149 0 9 722 21 0 0 0 chr12 17999588 17999609 -103257921 + GC_rich Low_complexity Low_complexity 1 21 0 9 722 21 0 0 0 chr12 17999917 17999938 -103257592 + GC_rich Low_complexity Low_complexity 1 21 0 9 722 711 62 0 0 chr12 18002966 18003063 -103254467 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 722 229 242 0 16 chr12 18003153 18003216 -103254314 - B4A SINE B4 -220 72 11 2 722 198 262 11 56 chr12 18005090 18005179 -103252351 - MER5B DNA MER1_type -62 116 32 3 722 502 245 137 30 chr12 18005600 18005768 -103251762 - B3A SINE B2 -10 188 3 4 722 229 118 19 38 chr12 18006038 18006091 -103251439 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 5 722 958 103 7 0 chr12 18006091 18006237 -103251293 - B1_Mm SINE Alu 0 147 1 6 722 765 209 173 0 chr12 18006289 18006514 -103251016 + Lx9 LINE L1 7381 7644 0 7 722 711 260 66 24 chr12 18006843 18007056 -103250474 - ID_B1 SINE B4 -2 222 1 8 722 255 266 202 8 chr12 18007371 18007500 -103250030 + Lx8 LINE L1 6978 7131 -342 9 722 332 178 14 0 chr12 18007569 18007642 -103249888 + GA-rich Low_complexity Low_complexity 3 76 0 1 722 231 271 121 16 chr12 18007661 18007785 -103249745 + Lx8 LINE L1 7335 7471 -2 9 722 198 100 0 104 chr12 18007857 18007924 -103249606 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 1 722 1012 134 23 6 chr12 18008780 18008952 -103248578 - RMER17D LTR ERVK -2 887 713 1 722 1165 252 36 3 chr12 18009029 18009331 -103248199 + MTD LTR MaLR 105 416 -3 1 722 529 271 90 38 chr12 18010374 18010585 -103246945 - ID_B1 SINE B4 0 224 3 1 722 315 267 53 20 chr12 18011225 18011326 -103246204 + B3 SINE B2 8 117 -81 1 722 495 48 0 0 chr12 18011368 18011430 -103246100 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 722 493 226 10 10 chr12 18011459 18011562 -103245968 + B1_Mur2 SINE Alu 7 109 -40 1 722 449 293 17 0 chr12 18011775 18011891 -103245639 + RSINE1 SINE B4 4 121 -44 1 722 1324 89 16 5 chr12 18011892 18012085 -103245445 + B2_Mm2 SINE B2 1 195 0 1 722 28 29 0 0 chr12 18012177 18012212 -103245318 + AT_rich Low_complexity Low_complexity 1 35 0 2 722 207 146 0 0 chr12 18012243 18012284 -103245246 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2 722 334 250 13 13 chr12 18012766 18012843 -103244687 + ID2 SINE ID 2 78 -5 2 722 459 0 0 0 chr12 18013053 18013104 -103244426 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 722 356 183 0 0 chr12 18013257 18013317 -103244213 + B3 SINE B2 70 129 -87 1 722 597 259 0 13 chr12 18013759 18013908 -103243622 - B1_Mm SINE Alu 0 147 1 2 722 180 102 40 20 chr12 18014075 18014125 -103243405 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2 722 8135 62 4 1 chr12 18014139 18015286 -103242244 - L1Md_F2 LINE L1 -1 6581 5468 2 722 1378 199 92 87 chr12 18015349 18015704 -103241826 + MTD LTR MaLR 16 376 -43 2 722 719 175 33 53 chr12 18015704 18015855 -103241675 - B1_Mus1 SINE Alu 0 148 1 2 722 1378 199 92 87 chr12 18015855 18015901 -103241629 + MTD LTR MaLR 377 419 0 2 722 273 79 0 0 chr12 18016122 18016160 -103241370 + MTC LTR MaLR 92 129 -292 2 722 556 70 11 11 chr12 18016704 18016791 -103240739 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 722 593 263 92 42 chr12 18016820 18017058 -103240472 - B4A SINE B4 -38 254 5 3 722 537 252 81 0 chr12 18017186 18017309 -103240221 + ETnERV2-int LTR ERVK 7070 7202 -204 3 722 259 324 69 23 chr12 18017755 18017963 -103239567 + L2b LINE L2 3022 3242 -184 3 722 554 258 52 104 chr12 18017968 18018180 -103239350 + ID_B1 SINE B4 2 202 -22 3 722 245 194 153 0 chr12 18018412 18018484 -103239046 - MER5A1 DNA MER1_type -71 95 13 3 722 1017 126 6 0 chr12 18018979 18019138 -103238392 + B2_Mm1a SINE B2 1 160 -33 3 722 486 0 0 0 chr12 18019138 18019192 -103238338 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 3 722 368 248 41 8 chr12 18019431 18019553 -103237977 - Lx3B LINE L1 0 6973 6848 3 722 1079 97 7 0 chr12 18020078 18020222 -103237308 + B1_Mm SINE Alu 3 147 0 3 722 645 110 0 0 chr12 18020224 18020333 -103237197 + (GAAA)n Simple_repeat Simple_repeat 1 109 0 4 722 422 228 92 35 chr12 18020964 18021105 -103236425 - B1F SINE Alu 0 149 1 4 722 554 293 44 9 chr12 18021474 18021701 -103235829 - MER63C DNA AcHobo -5 925 691 4 722 232 229 0 62 chr12 18021740 18021805 -103235725 + MER63D DNA AcHobo 537 597 -464 4 722 312 328 121 0 chr12 18021772 18021970 -103235560 - MER63C DNA AcHobo -237 693 472 4 722 498 112 34 0 chr12 18022017 18022106 -103235424 - RMER17D LTR ERVK -797 92 1 4 722 665 242 229 41 chr12 18022667 18023107 -103234423 - L1_Mur3 LINE L1 -4044 1836 1314 4 722 453 261 19 34 chr12 18023404 18023610 -103233920 - L1_Mur3 LINE L1 -6622 1106 904 4 722 216 0 0 0 chr12 18024326 18024350 -103233180 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 4 722 329 365 52 16 chr12 18025712 18025904 -103231626 + MTD LTR MaLR 15 213 -206 4 722 1746 157 99 24 chr12 18025904 18026202 -103231328 - RLTR9D LTR ERVK -2 401 75 4 722 3258 36 10 5 chr12 18026202 18026596 -103230934 + MTA_Mm LTR MaLR 1 396 0 4 722 1746 157 99 24 chr12 18026596 18026670 -103230860 - RLTR9D LTR ERVK -329 74 1 4 722 290 328 120 16 chr12 18026672 18026864 -103230666 + MTD LTR MaLR 192 403 -16 4 722 300 91 0 0 chr12 18026876 18026920 -103230610 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 722 408 354 19 19 chr12 18026965 18027175 -103230355 + ORR1D-int LTR MaLR 54 263 -1107 5 722 180 0 0 0 chr12 18027233 18027253 -103230277 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 722 757 138 28 35 chr12 18027315 18027458 -103230072 - B1_Mus2 SINE Alu -1 146 5 5 722 5849 237 16 9 chr12 18027470 18028878 -103228652 - Lx4B LINE L1 -4 7054 5637 5 722 1168 323 38 61 chr12 18028888 18029606 -103227924 + ORR1D-int LTR MaLR 562 1262 -108 5 722 274 259 25 41 chr12 18029708 18029829 -103227701 - Lx4B LINE L1 -4 7054 6936 5 722 8123 194 99 29 chr12 18030247 18030396 -103227134 + MurSatRep1 Unknown Unknown 2 175 -1962 5 722 346 314 65 0 chr12 18030396 18030520 -103227010 - B1_Mur2 SINE Alu -17 132 1 5 722 8123 194 99 29 chr12 18030520 18031364 -103226166 + MurSatRep1 Unknown Unknown 176 1125 -1012 5 722 1365 88 6 0 chr12 18031364 18031546 -103225984 - B2_Mm1a SINE B2 -9 184 2 5 722 8123 194 99 29 chr12 18031546 18032545 -103224985 + MurSatRep1 Unknown Unknown 1126 2134 -3 5 722 579 312 52 37 chr12 18032586 18032742 -103224788 + MurSatRep1 Unknown Unknown 1747 1819 -318 5 722 483 251 25 25 chr12 18032742 18032965 -103224565 + MMSAT4 Satellite Satellite 1 223 0 6 722 579 312 52 37 chr12 18032965 18033639 -103223891 + MurSatRep1 Unknown Unknown 1820 2137 0 5 722 437 292 4 4 chr12 18033582 18033805 -103223725 + MMSAT4 Satellite Satellite 1 223 0 6 722 527 323 30 30 chr12 18033759 18034230 -103223300 + MurSatRep1 Unknown Unknown 1747 2049 -88 6 722 2995 87 0 5 chr12 18034276 18034681 -103222849 + L1_Mus1 LINE L1 6164 6566 -1 6 722 432 296 42 37 chr12 18034697 18034911 -103222619 + MurSatRep1 Unknown Unknown 1835 2049 -88 6 722 339 283 30 26 chr12 18034850 18035132 -103222398 + MMSAT4 Satellite Satellite 1 283 0 6 722 298 267 0 11 chr12 18035282 18035373 -103222157 + ORR1C2 LTR MaLR 293 382 -2 6 722 885 153 14 0 chr12 18035657 18035801 -103221729 + B1_Mus1 SINE Alu 2 147 -1 6 722 2285 241 71 7 chr12 18036018 18036949 -103220581 - L1_Mur2 LINE L1 -3798 2082 1086 6 722 371 176 33 0 chr12 18036933 18037024 -103220506 - L1_Mur2 LINE L1 -6507 1221 1128 6 722 21 0 0 0 chr12 18037305 18037326 -103220204 + AT_rich Low_complexity Low_complexity 1 21 0 6 722 306 0 0 0 chr12 18037634 18037668 -103219862 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 722 210 71 0 0 chr12 18037669 18037697 -103219833 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 722 22 35 0 0 chr12 18037718 18037747 -103219783 + AT_rich Low_complexity Low_complexity 1 29 0 7 722 645 216 53 9 chr12 18037763 18037932 -103219598 - Lx2B LINE L1 -176 6800 6625 7 722 701 143 21 20 chr12 18038005 18038360 -103219170 + (TCTA)n Simple_repeat Simple_repeat 1 355 0 7 722 666 287 40 80 chr12 18038537 18038752 -103218778 + RLTR11A2 LTR ERVK 130 334 -193 7 722 1205 68 0 0 chr12 18038752 18038899 -103218631 + B1_Mm SINE Alu 1 147 0 7 722 666 287 40 80 chr12 18038899 18039009 -103218521 + RLTR11A2 LTR ERVK 335 442 -85 7 722 213 191 35 28 chr12 18039016 18039161 -103218369 + (TTATA)n Simple_repeat Simple_repeat 2 147 0 7 722 423 0 0 0 chr12 18039196 18039243 -103218287 + (TTA)n Simple_repeat Simple_repeat 2 48 0 7 722 405 186 28 28 chr12 18039471 18039648 -103217882 + (CATA)n Simple_repeat Simple_repeat 4 180 0 7 722 469 198 34 8 chr12 18039666 18039938 -103217592 + (CA)n Simple_repeat Simple_repeat 1 279 0 8 722 2927 41 0 6 chr12 18040407 18040750 -103216780 - IAPLTR4 LTR ERVK -4 341 1 8 722 4380 216 9 14 chr12 18040750 18041629 -103215901 - IAPLTR3-int LTR ERVK -20 6801 5927 8 722 3458 88 0 4 chr12 18041612 18042068 -103215462 - MMERVK10C-int LTR ERVK -1367 6214 5761 8 722 3279 100 2 16 chr12 18042056 18042505 -103215025 - MMERVK10C-int LTR ERVK -1936 5645 5203 8 722 785 95 28 49 chr12 18042761 18042905 -103214625 - MMERVK10C-int LTR ERVK -2911 4670 4530 8 722 496 188 10 33 chr12 18042917 18043042 -103214488 - MMERVK10C-int LTR ERVK -2380 2464 2357 8 722 3282 145 163 3 chr12 18043047 18043655 -103213875 - ETnERV2-int LTR ERVK -3135 4271 3567 8 722 680 219 379 30 chr12 18043681 18043903 -103213627 - ETnERV2-int LTR ERVK -4653 2753 2454 8 722 479 212 88 0 chr12 18043919 18044032 -103213498 - RLTR45-int LTR ERVK -5077 1060 938 8 722 267 231 124 62 chr12 18044019 18044116 -103213414 - RLTR45-int LTR ERVK -5449 688 586 8 722 681 108 19 116 chr12 18044156 18044347 -103213183 - RLTR45-int LTR ERVK -4937 2307 2175 8 722 379 216 39 49 chr12 18044345 18044447 -103213083 - RLTR45-int LTR ERVK -5055 351 251 8 722 803 209 44 52 chr12 18044549 18044797 -103212733 - IAPLTR3-int LTR ERVK -5755 1066 821 8 722 690 157 15 23 chr12 18044796 18044926 -103212604 - IAPLTR3-int LTR ERVK -6686 135 7 8 722 2588 55 62 0 chr12 18044931 18044965 -103212565 - IAPLTR4 LTR ERVK 0 345 312 8 722 320 43 0 21 chr12 18044965 18045012 -103212518 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 722 2588 55 62 0 chr12 18045012 18045302 -103212228 - IAPLTR4 LTR ERVK -34 311 2 8 722 389 246 252 0 chr12 18045327 18045588 -103211942 + L1MC1 LINE L1 6012 6333 -11 8 722 2175 127 41 0 chr12 18045598 18045937 -103211593 + L1_Mus3 LINE L1 6279 6631 -7 8 722 682 269 23 0 chr12 18045947 18046118 -103211412 + B3A SINE B2 1 175 -23 8 722 219 275 111 22 chr12 18046568 18046697 -103210833 + MIR SINE MIR 65 202 -66 9 722 216 0 0 0 chr12 18047300 18047324 -103210206 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 722 34813 68 5 9 chr12 18048522 18053747 -103203783 + L1Md_F3 LINE L1 218 5586 -297 9 722 8351 36 2 0 chr12 18053747 18054729 -103202801 + L1Md_F3 LINE L1 5587 6570 -14 9 722 268 240 147 0 chr12 18056893 18056968 -103200562 + PB1D10 SINE Alu 12 97 -20 9 722 897 180 0 0 chr12 18056974 18057124 -103200406 + B1_Mur4 SINE Alu 1 150 0 9 722 868 227 28 42 chr12 18057172 18057388 -103200142 + ID_B1 SINE B4 4 216 -8 9 722 684 273 14 72 chr12 18058292 18058501 -103199029 + B4A SINE B4 24 220 -72 9 722 411 302 65 16 chr12 18058518 18058703 -103198827 + B3A SINE B2 2 195 -3 9 722 964 139 0 0 chr12 18058724 18058861 -103198669 + B1_Mur4 SINE Alu 1 137 -13 9 722 2321 93 0 58 chr12 18058992 18059335 -103198195 + ORR1A2 LTR MaLR 1 323 -4 9 722 225 159 0 0 chr12 18059346 18059390 -103198140 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 722 1293 93 0 0 chr12 18059393 18059639 -103197891 + (GGGAA)n Simple_repeat Simple_repeat 1 246 0 1 722 543 255 43 25 chr12 18060326 18060487 -103197043 - RSINE1 SINE B4 -1 164 1 1 722 346 295 53 8 chr12 18060957 18061090 -103196440 - MER33 DNA MER1_type 0 324 186 1 722 1025 186 32 5 chr12 18061134 18061350 -103196180 - URR1B DNA MER1_type -3 222 1 1 722 195 214 0 0 chr12 18061563 18061633 -103195897 + GA-rich Low_complexity Low_complexity 1 70 0 1 722 351 0 0 0 chr12 18063962 18064001 -103193529 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 722 1118 74 23 0 chr12 18064987 18065204 -103192326 + (TTCC)n Simple_repeat Simple_repeat 1 222 0 1 722 282 29 0 0 chr12 18065927 18065962 -103191568 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 722 373 262 0 18 chr12 18065962 18066064 -103191466 - PB1D9 SINE Alu -10 110 10 1 722 563 240 45 26 chr12 18066252 18066406 -103191124 + B3 SINE B2 58 214 -2 1 722 945 64 8 0 chr12 18066479 18066604 -103190926 + B1_Mm SINE Alu 22 147 0 1 722 214 241 0 0 chr12 18066604 18066658 -103190872 + (CAAA)n Simple_repeat Simple_repeat 4 57 0 1 722 602 210 76 19 chr12 18066667 18066824 -103190706 + ID_B1 SINE B4 82 248 -44 1 722 248 49 49 0 chr12 18067012 18067053 -103190477 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 1 722 213 139 23 0 chr12 18067053 18067096 -103190434 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 722 569 203 47 31 chr12 18067106 18067233 -103190297 - B1_Mur3 SINE Alu -12 137 9 1 722 734 213 14 9 chr12 18067263 18067404 -103190126 - ID_B1 SINE B4 -70 222 85 1 722 722 232 55 30 chr12 18069429 18069629 -103187901 + B4A SINE B4 2 206 -86 1 722 698 248 0 0 chr12 18069857 18069986 -103187544 + RSINE1 SINE B4 3 131 -34 1 722 255 304 0 0 chr12 18070661 18070740 -103186790 + G-rich Low_complexity Low_complexity 3 81 0 1 722 217 304 78 26 chr12 18070846 18070961 -103186569 + MIRb SINE MIR 23 143 -125 1 722 2015 135 6 9 chr12 18070963 18071278 -103186252 - MTC LTR MaLR 0 421 108 1 722 585 179 85 50 chr12 18071283 18071424 -103186106 + B1_Mur3 SINE Alu 4 149 0 1 722 210 207 0 0 chr12 18071428 18071486 -103186044 + GA-rich Low_complexity Low_complexity 4 61 0 1 722 277 278 26 53 chr12 18072781 18072902 -103184628 + RMER17A LTR ERVK 286 486 -265 1 722 647 71 0 0 chr12 18072911 18072995 -103184535 - B2_Mm2 SINE B2 -109 86 3 1 722 277 278 26 53 chr12 18072998 18073009 -103184521 + RMER17A LTR ERVK 487 507 -244 1 722 354 267 0 0 chr12 18073068 18073154 -103184376 + PB1D10 SINE Alu 32 117 0 1 722 433 212 12 0 chr12 18073159 18073239 -103184291 + RSINE1 SINE B4 53 133 -32 1 722 460 211 66 66 chr12 18073224 18073361 -103184169 + B1F1 SINE Alu 13 149 0 1 722 595 245 16 42 chr12 18073392 18073583 -103183947 + B3 SINE B2 15 195 0 1 722 778 224 30 18 chr12 18074151 18074315 -103183215 - B3A SINE B2 -30 168 3 1 722 236 309 112 29 chr12 18074343 18074513 -103183017 + L2c LINE L2 2981 3164 -223 1 722 356 339 0 0 chr12 18074710 18074819 -103182711 + PB1D10 SINE Alu 3 111 -6 1 722 291 279 70 35 chr12 18074826 18074941 -103182589 - MIRb SINE MIR -149 119 1 1 722 216 294 35 63 chr12 18075776 18075950 -103181580 + (CAGGA)n Simple_repeat Simple_repeat 2 170 0 1 722 232 318 54 72 chr12 18076030 18076123 -103181407 + L1MD2 LINE L1 6084 6172 -187 1 722 389 20 20 0 chr12 18076123 18076173 -103181357 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 722 232 318 54 72 chr12 18076173 18076245 -103181285 + L1MD2 LINE L1 6173 6245 -114 1 722 868 308 39 28 chr12 18076358 18076642 -103180888 + B4A SINE B4 6 292 0 1 722 288 139 0 0 chr12 18076924 18076967 -103180563 - URR1B DNA MER1_type 0 225 183 1 722 3463 54 28 7 chr12 18077239 18077666 -103179864 - RLTR10C LTR ERVK 0 436 1 1 722 388 153 0 23 chr12 18077968 18078055 -103179475 + G-rich Low_complexity Low_complexity 2 86 0 1 722 770 186 36 0 chr12 18078395 18078535 -103178995 + B1_Mus1 SINE Alu 3 147 -1 1 722 511 121 0 20 chr12 18078535 18078636 -103178894 + (TAAA)n Simple_repeat Simple_repeat 1 99 0 1 722 254 254 136 123 chr12 18078686 18078848 -103178682 + MLT1F2 LTR MaLR 141 304 -265 1 722 743 225 94 5 chr12 18079108 18079300 -103178230 + B3 SINE B2 3 211 -5 1 722 491 179 141 33 chr12 18079324 18079445 -103178085 + B1_Mus2 SINE Alu 1 134 -13 1 722 821 76 8 0 chr12 18079450 18079568 -103177962 + (GGGAGA)n Simple_repeat Simple_repeat 3 121 0 1 722 4498 120 16 99 chr12 18080113 18080179 -103177351 + L1Md_F2 LINE L1 481 547 -6069 1 722 207 0 0 0 chr12 18080179 18080202 -103177328 + (CCCG)n Simple_repeat Simple_repeat 1 23 0 1 722 33865 75 2 14 chr12 18080202 18085309 -103172221 + L1Md_F2 LINE L1 548 5586 -297 1 722 7970 57 2 2 chr12 18085309 18086305 -103171225 + L1Md_F2 LINE L1 5587 6582 0 1 90 747 273 13 43 chr12 18087875 18088105 -103169425 + ID_B1 SINE B4 2 224 0 1 723 1009 116 0 0 chr12 18088137 18088275 -103169255 + B1_Mus1 SINE Alu 1 138 -10 1 723 288 91 0 0 chr12 18088353 18088397 -103169133 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 723 466 361 47 9 chr12 18088441 18088656 -103168874 - L1MD LINE L1 -540 5819 5597 1 723 405 283 177 0 chr12 18088706 18088819 -103168711 - RSINE1 SINE B4 -29 136 4 1 723 4207 150 49 8 chr12 18088826 18089160 -103168370 + RMER17D2 LTR ERVK 1 340 -469 1 723 1001 31 16 0 chr12 18089160 18089288 -103168242 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 1 723 4207 150 49 8 chr12 18089288 18089568 -103167962 + RMER17D2 LTR ERVK 341 641 -168 1 723 423 0 0 0 chr12 18089568 18089615 -103167915 + (CCA)n Simple_repeat Simple_repeat 2 48 0 1 723 4207 150 49 8 chr12 18089615 18089772 -103167758 + RMER17D2 LTR ERVK 642 804 -5 1 723 238 282 0 40 chr12 18089857 18089931 -103167599 + Tigger12 DNA MER2_type 460 530 -1429 1 723 283 256 34 68 chr12 18089868 18089956 -103167574 - RMER21A LTR ERV1 -287 660 576 1 723 1383 170 180 142 chr12 18089877 18090322 -103167208 - MT2A LTR ERVL -71 462 1 1 723 558 259 14 0 chr12 18090323 18090466 -103167064 - L1MD LINE L1 -676 5566 5422 1 723 841 230 16 21 chr12 18090483 18090653 -103166877 + B3A SINE B2 1 171 -27 1 723 387 0 0 0 chr12 18090653 18090696 -103166834 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 723 841 230 16 21 chr12 18090696 18090716 -103166814 + B3A SINE B2 172 190 -8 1 723 678 225 67 62 chr12 18090764 18090958 -103166572 - B3 SINE B2 -20 196 2 1 723 294 50 0 0 chr12 18090995 18091035 -103166495 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 723 1050 99 0 7 chr12 18091035 18091169 -103166361 - B1_Mus1 SINE Alu -13 135 2 1 723 1369 68 5 40 chr12 18091224 18091422 -103166108 - B2_Mm2 SINE B2 -2 193 3 1 723 316 269 9 88 chr12 18091454 18091568 -103165962 - RLTR25A LTR ERVK -476 627 523 1 723 822 149 14 41 chr12 18091469 18091616 -103165914 - B1_Mus1 SINE Alu 0 148 6 1 723 4156 58 2 0 chr12 18091670 18092172 -103165358 + RLTR1C LTR ERV1 1 503 0 1 723 235 229 0 0 chr12 18092173 18092234 -103165296 + T-rich Low_complexity Low_complexity 1 61 0 1 723 804 262 39 19 chr12 18092576 18092782 -103164748 - MTD LTR MaLR -14 405 196 1 723 837 255 66 0 chr12 18092823 18093019 -103164511 - B3 SINE B2 -7 209 1 1 723 845 222 30 36 chr12 18093019 18093215 -103164315 - MTD LTR MaLR -202 198 1 1 723 187 362 68 41 chr12 18093238 18093385 -103164145 - MIR3 SINE MIR -57 151 1 1 723 567 227 119 14 chr12 18093843 18093986 -103163544 + RSINE1 SINE B4 6 163 -2 1 723 630 0 0 0 chr12 18093990 18094060 -103163470 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 723 559 272 132 68 chr12 18094177 18094336 -103163194 - RMER10A LTR ERVL 0 442 258 1 723 261 0 0 0 chr12 18094336 18094365 -103163165 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 1 723 559 272 132 68 chr12 18094365 18094560 -103162970 - RMER10A LTR ERVL -185 257 65 1 723 3460 58 25 2 chr12 18095064 18095509 -103162021 - MURVY-LTR LTR ERV1 -64 455 1 1 723 335 283 49 35 chr12 18095542 18095685 -103161845 + MLT1N2 LTR MaLR 413 557 -5 1 723 556 135 34 0 chr12 18096042 18096131 -103161399 + MMERVK10C-int LTR ERVK 1 92 -7489 1 723 236 182 0 43 chr12 18096132 18096178 -103161352 + RLTR27 LTR ERVK 231 274 -35 1 723 1284 153 0 48 chr12 18096178 18096405 -103161125 + MMERVK10C-int LTR ERVK 226 441 -7140 1 723 10967 106 1 14 chr12 18096434 18097986 -103159544 + MMERVK10C-int LTR ERVK 407 1939 -5642 1 723 305 143 32 48 chr12 18098000 18098106 -103159424 + (TAA)n Simple_repeat Simple_repeat 3 108 0 1 723 230 0 0 32 chr12 18098106 18098137 -103159393 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 723 305 143 32 48 chr12 18098137 18098155 -103159375 + (TAA)n Simple_repeat Simple_repeat 1 17 0 1 723 23666 83 4 29 chr12 18098166 18101375 -103156155 + MMERVK10C-int LTR ERVK 4453 7581 0 1 723 2139 113 33 3 chr12 18101375 18101677 -103155853 + RLTR10E LTR ERVK 1 311 0 1 723 944 82 0 7 chr12 18102019 18102155 -103155375 + (TTTC)n Simple_repeat Simple_repeat 4 138 0 1 723 1358 76 0 7 chr12 18102157 18102434 -103155096 + (TCTA)n Simple_repeat Simple_repeat 1 275 0 1 723 290 286 60 0 chr12 18102465 18102483 -103155047 - ID_B1 SINE B4 -127 97 9 1 723 314 227 45 0 chr12 18102483 18102549 -103154981 - ID4_ SINE ID -6 77 9 1 723 838 197 0 14 chr12 18102570 18102709 -103154821 - B1_Mur1 SINE Alu 0 149 13 1 723 393 220 17 92 chr12 18102605 18102725 -103154805 - MT2B LTR ERVL -331 270 160 1 723 890 144 7 0 chr12 18102768 18102914 -103154616 + B1_Mus1 SINE Alu 1 147 -1 1 723 566 302 40 7 chr12 18103033 18103183 -103154347 - RSINE1 SINE B4 0 165 11 1 723 412 257 51 51 chr12 18103329 18103485 -103154045 - MTD-int LTR MaLR -1102 156 1 1 723 765 241 183 6 chr12 18103491 18103831 -103153699 - MTD LTR MaLR 0 419 1 1 723 2810 239 31 71 chr12 18103890 18104678 -103152852 + MTD-int LTR MaLR 96 848 -410 1 723 995 92 14 21 chr12 18104678 18104823 -103152707 + B1_Mm SINE Alu 4 147 0 1 723 1269 307 87 102 chr12 18104823 18105318 -103152212 + MTD-int LTR MaLR 762 1252 -6 1 723 1215 210 82 4 chr12 18105331 18105599 -103151931 + MTD LTR MaLR 25 313 -106 1 723 2782 120 31 47 chr12 18105877 18106366 -103151164 - RLTR45 LTR ERVK 0 482 2 1 723 7814 144 10 10 chr12 18106367 18107770 -103149760 - RLTR45-int LTR ERVK -456 7761 6331 1 723 3557 72 8 37 chr12 18107864 18108354 -103149176 - RLTR45-int LTR ERVK -5601 1643 1168 1 723 1782 78 74 0 chr12 18108527 18108784 -103148746 - RLTR45-int LTR ERVK -6067 1177 902 1 723 1879 88 46 39 chr12 18108842 18109126 -103148404 - RLTR45-int LTR ERVK -6278 966 681 1 723 1080 62 0 40 chr12 18109475 18109625 -103147905 - RLTR45-int LTR ERVK -6552 692 549 1 723 3766 114 35 21 chr12 18110390 18110953 -103146577 - RLTR45-int LTR ERVK -6673 571 1 1 723 2554 145 28 53 chr12 18110953 18111447 -103146083 - RLTR45 LTR ERVK 0 482 1 1 723 470 212 139 91 chr12 18111535 18111613 -103145917 + URR1A DNA MER1_type 2 101 -125 1 723 1100 77 7 0 chr12 18111613 18111756 -103145774 + B1_Mm SINE Alu 1 144 -3 1 723 394 212 139 91 chr12 18111756 18111864 -103145666 + URR1A DNA MER1_type 102 197 -29 1 723 1147 214 67 7 chr12 18111892 18112161 -103145369 - ORR1D1 LTR MaLR -89 285 1 1 723 235 227 76 0 chr12 18112513 18112579 -103144951 - L2c LINE L2 -53 3334 3264 2 723 1867 157 67 27 chr12 18113177 18113550 -103143980 - MTC LTR MaLR -33 388 1 2 723 489 174 0 0 chr12 18113610 18113742 -103143788 + (TGG)n Simple_repeat Simple_repeat 2 133 0 2 723 197 33 33 0 chr12 18114175 18114205 -103143325 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 723 1086 74 0 45 chr12 18114205 18114351 -103143179 - B1_Mus1 SINE Alu -8 140 1 2 723 556 181 203 121 chr12 18115165 18115372 -103142158 + URR1B DNA MER1_type 2 225 0 2 723 1023 222 14 0 chr12 18115410 18115622 -103141908 - B3 SINE B2 0 216 2 2 723 1221 296 11 32 chr12 18118874 18118907 -103138623 + ORR1D2 LTR MaLR 1 33 -337 2 723 1141 126 91 10 chr12 18118907 18119116 -103138414 - URR1A DNA MER1_type 0 226 1 2 723 1221 296 11 32 chr12 18119116 18119456 -103138074 + ORR1D2 LTR MaLR 34 366 -4 2 723 1608 241 43 2 chr12 18119745 18120144 -103137386 + MTD LTR MaLR 2 416 -3 2 723 407 298 100 12 chr12 18121185 18121345 -103136185 - ID_B1 SINE B4 0 224 51 2 723 253 219 119 37 chr12 18122025 18122134 -103135396 + B2_Mm2 SINE B2 8 125 -70 2 723 360 0 0 0 chr12 18122183 18122223 -103135307 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 723 526 206 10 10 chr12 18122252 18122355 -103135175 + B1_Mur2 SINE Alu 7 109 -40 2 723 479 265 17 0 chr12 18122562 18122679 -103134851 + RSINE1 SINE B4 3 121 -44 2 723 1167 88 14 99 chr12 18122680 18122893 -103134637 + B2_Mm2 SINE B2 1 195 0 2 723 31 26 0 0 chr12 18122984 18123022 -103134508 + AT_rich Low_complexity Low_complexity 1 38 0 2 723 207 146 0 0 chr12 18123053 18123094 -103134436 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2 723 357 282 123 82 chr12 18123429 18123747 -103133783 - ORR1E LTR MaLR 0 370 1 2 723 982 170 0 0 chr12 18123982 18124129 -103133401 - B1_Mur1 SINE Alu 0 149 3 2 723 308 289 80 30 chr12 18124216 18124316 -103133214 + RSINE1 SINE B4 50 154 -11 2 723 1468 83 0 5 chr12 18124390 18124583 -103132947 + B2_Mm2 SINE B2 1 192 -3 2 723 2245 137 16 45 chr12 18125212 18125639 -103131891 - MTC LTR MaLR -6 415 1 2 723 400 292 62 0 chr12 18126656 18126769 -103130761 - RSINE1 SINE B4 -6 159 40 2 723 391 102 0 0 chr12 18127152 18127211 -103130319 + RMER6D LTR ERVK 1 59 -661 2 723 342 200 0 0 chr12 18127462 18127522 -103130008 + B3 SINE B2 70 129 -87 2 723 627 245 0 13 chr12 18127962 18128111 -103129419 - B1_Mm SINE Alu 0 147 1 2 723 747 22 0 0 chr12 18128301 18128390 -103129140 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 2 723 1156 236 89 97 chr12 18128532 18128834 -103128696 + MTD LTR MaLR 16 351 -68 2 723 1026 0 0 0 chr12 18128834 18128948 -103128582 + (TTCCC)n Simple_repeat Simple_repeat 5 118 0 2 723 1156 236 89 97 chr12 18128948 18129005 -103128525 + MTD LTR MaLR 352 374 -45 2 723 769 176 34 34 chr12 18129005 18129152 -103128378 - B1_Mus1 SINE Alu -1 147 1 2 723 1156 236 89 97 chr12 18129152 18129195 -103128335 + MTD LTR MaLR 375 416 -3 2 723 1059 107 6 0 chr12 18129361 18129520 -103128010 + B2_Mm1a SINE B2 1 160 -33 2 723 396 0 0 0 chr12 18129520 18129564 -103127966 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 723 475 168 47 0 chr12 18129806 18129913 -103127617 - Lx3B LINE L1 0 6973 6862 2 723 451 206 92 35 chr12 18131054 18131195 -103126335 - B1F SINE Alu 0 149 1 2 723 823 314 83 122 chr12 18131563 18132277 -103125253 - MER63C DNA AcHobo -5 925 240 2 723 804 164 21 7 chr12 18132543 18132684 -103124846 + B1_Mur1 SINE Alu 1 143 -6 2 723 625 224 70 25 chr12 18132824 18133029 -103124501 + B3 SINE B2 10 212 -4 2 723 342 257 0 0 chr12 18133037 18133142 -103124388 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 723 499 227 0 30 chr12 18133158 18133258 -103124272 + B3 SINE B2 3 99 -117 2 723 741 129 0 0 chr12 18133258 18133374 -103124156 + B1_Mus1 SINE Alu 2 117 -31 2 723 264 111 0 0 chr12 18133430 18133475 -103124055 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 2 723 346 175 16 0 chr12 18133490 18133553 -103123977 + B3 SINE B2 89 152 -64 2 723 490 241 9 0 chr12 18134443 18134555 -103122975 - PB1D9 SINE Alu -6 114 2 2 723 1062 89 0 20 chr12 18134605 18134754 -103122776 + B1_Mus2 SINE Alu 2 147 0 2 723 183 42 0 0 chr12 18134758 18134782 -103122748 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 723 1437 218 100 8 chr12 18135176 18135556 -103121974 - MTD LTR MaLR 0 419 5 2 723 762 187 0 14 chr12 18136052 18136193 -103121337 - B1_Mur3 SINE Alu -6 143 5 2 723 252 296 28 0 chr12 18136316 18136387 -103121143 + ID2 SINE ID 1 73 -10 2 723 285 89 0 0 chr12 18136454 18136499 -103121031 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 723 1014 126 0 0 chr12 18136530 18136794 -103120736 + (TG)n Simple_repeat Simple_repeat 1 264 0 2 723 3257 50 120 0 chr12 18136794 18137218 -103120312 + IAPLTR2_Mm LTR ERVK 1 475 0 2 723 12797 70 42 68 chr12 18137219 18139236 -103118294 + IAPEz-int LTR ERVK 9 1897 -4584 2 723 5625 53 14 7 chr12 18139218 18139916 -103117614 + IAPEz-int LTR ERVK 5777 6479 -2 2 723 3194 59 120 0 chr12 18139918 18140342 -103117188 + IAPLTR2_Mm LTR ERVK 1 475 0 2 723 934 127 0 13 chr12 18140342 18141025 -103116505 + (TG)n Simple_repeat Simple_repeat 1 673 0 2 723 197 208 0 14 chr12 18142636 18142709 -103114821 + (CCCCG)n Simple_repeat Simple_repeat 5 76 0 2 723 431 186 92 14 chr12 18145722 18145864 -103111666 + Lx9 LINE L1 7490 7642 -2 2 723 4888 128 47 31 chr12 18146682 18147187 -103110343 - RMER17D LTR ERVK -2 887 364 2 723 222 37 0 0 chr12 18147187 18147214 -103110316 + (GGAGA)n Simple_repeat Simple_repeat 2 28 0 2 723 4888 128 47 31 chr12 18147214 18147581 -103109949 - RMER17D LTR ERVK -526 363 1 2 723 512 273 160 11 chr12 18148114 18148569 -103108961 - L1_Mur3 LINE L1 -4044 1836 1314 2 723 370 267 40 35 chr12 18148866 18149068 -103108462 - L1_Mur3 LINE L1 -6622 1106 904 2 723 300 360 70 15 chr12 18151144 18151344 -103106186 + MTD LTR MaLR 1 211 -208 2 723 1668 169 90 24 chr12 18151346 18151647 -103105883 - RLTR9D LTR ERVK -2 401 75 2 723 3174 53 5 5 chr12 18151647 18152043 -103105487 + MTA_Mm LTR MaLR 1 396 0 2 723 1668 169 90 24 chr12 18152043 18152117 -103105413 - RLTR9D LTR ERVK -329 74 1 2 723 265 337 103 16 chr12 18152126 18152310 -103105220 + MTD LTR MaLR 204 403 -16 2 723 552 328 39 39 chr12 18152377 18152665 -103104865 + ORR1D-int LTR MaLR 45 361 -1219 2 723 5304 235 47 22 chr12 18152706 18154084 -103103446 - Lx4B LINE L1 -4 7054 5642 2 723 1155 321 29 61 chr12 18154165 18154821 -103102709 + ORR1D-int LTR MaLR 628 1262 -108 2 723 210 171 0 0 chr12 18154880 18154915 -103102615 + T-rich Low_complexity Low_complexity 1 35 0 2 723 270 265 16 33 chr12 18154924 18155045 -103102485 - Lx4B LINE L1 -4 7054 6936 2 723 218 319 121 70 chr12 18155161 18155360 -103102170 - B3 SINE B2 0 216 8 2 723 657 211 14 0 chr12 18155463 18155610 -103101920 + MurSatRep1 Unknown Unknown 2 150 -1987 2 723 360 306 65 0 chr12 18155612 18155736 -103101794 - B1_Mur2 SINE Alu -17 132 1 2 723 7772 193 36 47 chr12 18155736 18156609 -103100921 + MurSatRep1 Unknown Unknown 284 1124 -1013 2 723 968 162 64 0 chr12 18156609 18156782 -103100748 - B2_Mm2 SINE B2 -10 185 2 2 723 7772 193 36 47 chr12 18156782 18157780 -103099750 + MurSatRep1 Unknown Unknown 1125 2135 -2 2 723 378 320 55 34 chr12 18157821 18158202 -103099328 + MurSatRep1 Unknown Unknown 1834 2137 0 2 723 482 253 27 27 chr12 18157977 18158536 -103098994 + MMSAT4 Satellite Satellite 1 559 0 2 723 509 312 59 40 chr12 18158525 18158817 -103098713 + MurSatRep1 Unknown Unknown 1691 1992 -145 2 723 386 291 0 0 chr12 18158817 18158944 -103098586 + MMSAT4 Satellite Satellite 30 156 -12 2 723 509 312 59 40 chr12 18158944 18158997 -103098533 + MurSatRep1 Unknown Unknown 1993 2049 -88 2 723 2871 109 0 2 chr12 18159001 18159407 -103098123 + L1_Mus1 LINE L1 6163 6567 0 2 723 230 373 13 7 chr12 18159407 18159558 -103097972 + MurSatRep1 Unknown Unknown 1898 2049 -88 2 723 401 224 36 36 chr12 18159427 18159566 -103097964 + MMSAT4 Satellite Satellite 1 139 0 2 723 272 246 0 0 chr12 18159816 18159885 -103097645 + ORR1C2 LTR MaLR 302 370 -14 2 723 864 153 21 0 chr12 18160177 18160321 -103097209 + B1_Mus1 SINE Alu 2 148 0 2 723 15404 51 1 1 chr12 18160372 18162263 -103095267 + L1Md_F2 LINE L1 3695 5586 -297 2 723 7793 54 15 4 chr12 18162264 18163245 -103094285 + L1Md_F2 LINE L1 5588 6579 -3 2 723 33438 16 3 7 chr12 18163556 18170168 -103087362 - L1Md_A LINE L1 0 6582 1 2 723 1890 257 76 5 chr12 18170171 18171069 -103086461 - L1_Mur3 LINE L1 -3823 2057 1087 2 723 484 247 47 29 chr12 18171054 18171225 -103086305 - L1_Mur3 LINE L1 -6507 1221 1048 2 723 180 366 25 59 chr12 18171559 18171678 -103085852 + MER5A DNA MER1_type 56 170 -19 2 723 225 245 19 10 chr12 18171805 18171908 -103085622 + (CATA)n Simple_repeat Simple_repeat 4 107 0 2 723 403 224 23 6 chr12 18171883 18172058 -103085472 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 723 366 224 267 0 chr12 18172732 18172848 -103084682 + L1MC1 LINE L1 6187 6333 0 2 723 2130 99 60 9 chr12 18172858 18173194 -103084336 + L1_Mus3 LINE L1 6279 6631 -7 2 723 718 257 26 0 chr12 18173205 18173357 -103084173 + B3A SINE B2 2 157 -41 2 723 262 297 132 37 chr12 18173763 18173952 -103083578 + MIRc SINE MIR 2 208 -60 2 723 317 232 12 12 chr12 18174527 18174610 -103082920 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 723 743 221 0 0 chr12 18175461 18175601 -103081929 + B1_Mur4 SINE Alu 6 145 -5 2 723 226 309 47 147 chr12 18175465 18175655 -103081875 + B4A SINE B4 94 264 -28 2 723 237 217 0 0 chr12 18175679 18175725 -103081805 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 723 2337 81 0 80 chr12 18175725 18176076 -103081454 + ORR1A2 LTR MaLR 1 323 -4 2 723 822 11 0 0 chr12 18176087 18176182 -103081348 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 723 535 291 37 19 chr12 18176877 18177038 -103080492 - RSINE1 SINE B4 -1 164 1 2 723 27 29 0 0 chr12 18177043 18177077 -103080453 + AT_rich Low_complexity Low_complexity 1 34 0 2 723 1096 184 28 5 chr12 18177734 18177952 -103079578 - URR1B DNA MER1_type -1 224 2 2 723 2167 187 25 39 chr12 18179398 18179832 -103077698 - RLTR1D LTR ERV1 -16 589 162 2 723 346 140 0 0 chr12 18179911 18179968 -103077562 - RLTR1B-int LTR ERV1 0 3299 3243 2 723 26592 238 21 11 chr12 18179962 18186030 -103071500 - MMERGLN-int LTR ERV1 -1387 6391 95 2 723 2051 207 43 44 chr12 18186093 18186556 -103070974 - RLTR1D LTR ERV1 0 605 135 2 723 378 61 0 0 chr12 18187686 18187735 -103069795 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 723 344 138 15 0 chr12 18188720 18188785 -103068745 + CT-rich Low_complexity Low_complexity 2 67 0 2 723 366 246 86 17 chr12 18189438 18189554 -103067976 + ID_B1 SINE B4 74 197 -27 2 723 2437 120 0 45 chr12 18189554 18189930 -103067600 + RLTR10D LTR ERVK 1 359 0 3 723 8057 64 23 25 chr12 18189930 18190989 -103066541 + IAP-d-int LTR ERVK 1 1056 -5486 3 723 12673 71 1 1 chr12 18190988 18192559 -103064971 + IAP-d-int LTR ERVK 4971 6542 0 3 723 1145 103 0 12 chr12 18192559 18192726 -103064804 + RLTR10D LTR ERVK 1 165 -194 3 723 691 135 0 26 chr12 18192695 18192809 -103064721 + URR1B DNA MER1_type 115 225 0 3 723 643 266 24 34 chr12 18193631 18193837 -103063693 + B4A SINE B4 2 205 -87 3 723 715 226 0 0 chr12 18194047 18194171 -103063359 + RSINE1 SINE B4 3 126 -39 3 723 368 275 184 18 chr12 18194230 18194393 -103063137 - MER2 DNA MER2_type -149 196 7 3 723 230 294 80 27 chr12 18195008 18195120 -103062410 + MIRb SINE MIR 23 140 -128 3 723 1669 161 75 7 chr12 18195125 18195419 -103062111 - MTC LTR MaLR 0 421 108 3 723 723 184 48 28 chr12 18195422 18195567 -103061963 + B1_Mur3 SINE Alu 2 149 0 3 723 213 211 0 0 chr12 18195576 18195628 -103061902 + GA-rich Low_complexity Low_complexity 2 53 0 3 723 592 231 17 0 chr12 18195628 18195745 -103061785 - MTC LTR MaLR -302 119 1 3 723 232 208 104 0 chr12 18196851 18196899 -103060631 + MTE2a LTR MaLR 1 53 -326 3 723 191 61 30 0 chr12 18196903 18196936 -103060594 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 3 723 856 200 94 10 chr12 18196946 18197138 -103060392 - B3 SINE B2 -6 210 3 3 723 835 166 27 7 chr12 18197167 18197313 -103060217 - B1_Mur4 SINE Alu -1 149 1 3 723 1277 180 9 5 chr12 18197344 18197567 -103059963 + URR1B DNA MER1_type 1 224 -1 3 723 781 231 140 109 chr12 18197567 18197879 -103059651 + MTE2a LTR MaLR 43 364 -15 3 723 327 303 48 48 chr12 18197986 18198090 -103059440 + RSINE1 SINE B4 34 137 -28 3 723 655 100 18 0 chr12 18198139 18198249 -103059281 + (GA)n Simple_repeat Simple_repeat 1 112 0 3 723 2561 137 5 2 chr12 18199612 18200014 -103057516 - RLTR9E LTR ERVK -6 403 1 3 723 461 118 0 26 chr12 18200014 18200092 -103057438 - ETnERV2-int LTR ERVK 0 7406 7331 3 723 16957 91 17 24 chr12 18200302 18202618 -103054912 - ETnERV2-int LTR ERVK -977 6429 4130 3 723 711 269 83 48 chr12 18202615 18202928 -103054602 - ETnERV2-int LTR ERVK -4760 3457 3134 3 723 4585 8 0 0 chr12 18203005 18203498 -103054032 + MT2_Mm LTR ERVL 1 493 0 3 723 47833 19 9 0 chr12 18203498 18208809 -103048721 + MERVL-int LTR ERVL 1 5360 -125 3 723 376 179 46 35 chr12 18208809 18208896 -103048634 + ORR1A3-int LTR MaLR 553 640 -1323 3 723 319 0 0 0 chr12 18208896 18208934 -103048596 + MERVL-int LTR ERVL 5448 5485 0 3 723 4552 8 0 2 chr12 18208934 18209428 -103048102 + MT2_Mm LTR ERVL 1 493 0 3 723 8007 262 27 22 chr12 18209459 18212188 -103045342 - ETnERV2-int LTR ERVK -3556 2611 2 3 723 2699 123 7 5 chr12 18212189 18212597 -103044933 - RLTR9E LTR ERVK 0 409 1 3 723 267 31 0 0 chr12 18212673 18212705 -103044825 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 723 575 119 0 0 chr12 18212705 18212789 -103044741 - B2_Mm2 SINE B2 -109 86 3 3 723 338 279 0 0 chr12 18212864 18212950 -103044580 + PB1D10 SINE Alu 32 117 0 3 723 414 208 0 0 chr12 18212957 18213029 -103044501 + RSINE1 SINE B4 56 127 -38 3 723 401 310 8 23 chr12 18213020 18213152 -103044378 + B1F1 SINE Alu 13 142 -7 3 723 568 239 31 43 chr12 18213188 18213377 -103044153 + B3 SINE B2 15 195 0 3 723 737 244 31 18 chr12 18213943 18214106 -103043424 - B3A SINE B2 -30 168 4 3 723 206 348 77 36 chr12 18214110 18214304 -103043226 + L2c LINE L2 2963 3164 -223 3 723 307 312 28 0 chr12 18214492 18214601 -103042929 + PB1D7 SINE Alu 3 114 -6 3 723 358 308 8 41 chr12 18214608 18214730 -103042800 - MIRb SINE MIR -149 119 2 3 723 755 309 43 28 chr12 18215826 18216079 -103041451 + B4A SINE B4 36 292 0 3 723 932 164 172 16 chr12 18216364 18216556 -103040974 - URR1B DNA MER1_type 0 225 4 3 723 243 338 71 14 chr12 18217054 18217195 -103040335 - RMER15 LTR ERVL -11 564 416 3 723 305 256 3 32 chr12 18217444 18217544 -103039986 - MT2A LTR ERVL -496 105 9 3 723 763 250 50 63 chr12 18218040 18218323 -103039207 - MTE2a LTR MaLR 0 379 42 3 723 629 189 167 64 chr12 18218323 18218527 -103039003 + URR1A DNA MER1_type 1 225 -1 3 723 763 245 64 68 chr12 18218527 18218571 -103038959 - MTE2a LTR MaLR -338 41 1 3 724 747 123 30 30 chr12 18219370 18219538 -103037992 + GA-rich Low_complexity Low_complexity 1 168 0 3 724 308 212 122 41 chr12 18219938 18220061 -103037469 + L1MC4a LINE L1 6967 7099 -783 3 724 231 276 150 87 chr12 18220094 18220221 -103037309 + MLT1F LTR MaLR 132 266 -282 3 724 805 223 83 0 chr12 18220511 18220704 -103036826 + B3 SINE B2 3 211 -5 3 724 436 205 157 33 chr12 18220728 18220849 -103036681 + B1_Mur2 SINE Alu 1 136 -13 3 724 297 51 0 0 chr12 18220859 18220898 -103036632 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 3 724 395 49 33 0 chr12 18221086 18221147 -103036383 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 3 724 429 20 0 0 chr12 18221155 18221205 -103036325 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 724 249 214 0 0 chr12 18224546 18224602 -103032928 + A-rich Low_complexity Low_complexity 1 56 0 3 724 834 246 24 33 chr12 18224793 18225003 -103032527 + ID_B1 SINE B4 3 210 -14 3 724 186 43 0 0 chr12 18225007 18225030 -103032500 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 724 257 231 58 0 chr12 18225040 18225053 -103032477 + ORR1B1-int LTR MaLR 627 646 -863 3 724 857 83 0 0 chr12 18225053 18225173 -103032357 + B1_Mus1 SINE Alu 1 120 -28 3 724 346 330 10 0 chr12 18225203 18225303 -103032227 + B1F2 SINE Alu 23 123 -26 3 724 309 235 12 24 chr12 18225399 18225482 -103032048 + B4A SINE B4 137 218 -74 3 724 21 36 0 0 chr12 18225502 18225530 -103032000 + AT_rich Low_complexity Low_complexity 1 28 0 3 724 408 238 0 0 chr12 18225623 18225791 -103031739 + (CA)n Simple_repeat Simple_repeat 1 168 0 3 724 549 212 0 0 chr12 18225814 18225993 -103031537 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 724 214 294 15 0 chr12 18226011 18226079 -103031451 + MIRb SINE MIR 174 242 -26 3 724 760 245 58 19 chr12 18227265 18227473 -103030057 - ID_B1 SINE B4 -7 217 2 3 724 505 296 7 7 chr12 18227830 18227966 -103029564 + ID_B1 SINE B4 82 217 -7 3 724 453 200 0 0 chr12 18229104 18229194 -103028336 + B1_Mur4 SINE Alu 40 129 -21 3 724 245 29 0 29 chr12 18229198 18229233 -103028297 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 724 736 244 62 0 chr12 18229301 18229510 -103028020 - ID_B1 SINE B4 -1 223 2 3 724 181 118 88 0 chr12 18229692 18229726 -103027804 + MIRm SINE MIR 133 169 -107 3 724 334 182 30 0 chr12 18229726 18229825 -103027705 + CT-rich Low_complexity Low_complexity 5 106 0 3 724 812 149 0 84 chr12 18229849 18230003 -103027527 - B1_Mur4 SINE Alu -9 141 1 3 724 414 39 0 0 chr12 18231696 18231748 -103025782 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 724 545 321 0 0 chr12 18232638 18232806 -103024724 - MER3 DNA MER1_type -17 192 25 3 724 265 159 0 31 chr12 18233163 18233228 -103024302 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 724 2124 139 72 11 chr12 18235675 18236052 -103021478 + RLTR9D LTR ERVK 1 400 -3 3 724 2517 111 15 34 chr12 18238035 18238446 -103019084 - RLTR9D LTR ERVK 0 403 1 3 724 346 167 27 14 chr12 18238447 18238520 -103019010 - ETnERV2-int LTR ERVK -2 7404 7331 3 724 3645 176 40 49 chr12 18238725 18240630 -103016900 - ETnERV2-int LTR ERVK -3318 4088 2369 3 724 8356 30 5 0 chr12 18240630 18242034 -103015496 - L1Md_T LINE L1 0 6582 5169 3 724 821 96 52 0 chr12 18242043 18242158 -103015372 - ETnERV2-int LTR ERVK -3844 3562 3442 3 724 3441 144 13 70 chr12 18242404 18242777 -103014753 - ETnERV2-int LTR ERVK -4271 3135 2961 3 724 1234 55 0 0 chr12 18242777 18242923 -103014607 + B1_Mm SINE Alu 2 147 0 3 724 3441 141 26 55 chr12 18242923 18243398 -103014132 - ETnERV2-int LTR ERVK -4446 2960 2496 3 724 4759 150 83 39 chr12 18243423 18244579 -103012951 - ETnERV2-int LTR ERVK -5321 2085 108 3 724 272 173 27 141 chr12 18244596 18244719 -103012811 - ETnERV2-int LTR ERVK -3204 110 2 3 724 2496 118 12 34 chr12 18244721 18245133 -103012397 - RLTR9D LTR ERVK 0 403 1 3 724 228 0 86 0 chr12 18246337 18246372 -103011158 - L1MDa LINE L1 -5455 1178 1141 3 724 2855 84 17 26 chr12 18246832 18247247 -103010283 - RLTR9F LTR ERVK -4 411 1 3 724 5140 55 2 5 chr12 18247596 18248222 -103009308 - RLTR1 LTR ERV1 0 624 1 3 724 2024 96 28 22 chr12 18254023 18254343 -103003187 + RLTRETN_Mm LTR ERVK 1 322 0 3 724 439 239 97 0 chr12 18258018 18258131 -102999399 + B4 SINE B4 134 257 -35 3 724 231 36 0 0 chr12 18258133 18258161 -102999369 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 724 235 379 95 0 chr12 18258196 18258291 -102999239 + RSINE1 SINE B4 60 163 -2 3 724 1101 188 39 0 chr12 18258364 18258572 -102998958 + B3 SINE B2 1 216 0 3 724 1823 209 63 8 chr12 18258946 18259341 -102998189 - MTD LTR MaLR 0 419 3 3 724 2594 111 30 28 chr12 18260075 18260475 -102997055 + L1_Mus3 LINE L1 4476 4876 -1007 3 724 37606 63 3 8 chr12 18260476 18266663 -102990867 - L1Md_F3 LINE L1 -14 6570 422 3 724 7437 102 13 2 chr12 18266650 18268417 -102989113 + L1_Mus3 LINE L1 4852 6637 -1 3 724 24 32 0 0 chr12 18268547 18268578 -102988952 + AT_rich Low_complexity Low_complexity 1 31 0 3 724 395 359 0 7 chr12 18268582 18268725 -102988805 + RSINE1 SINE B4 2 143 -22 3 724 240 35 0 0 chr12 18268729 18268758 -102988772 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 724 418 314 31 25 chr12 18268895 18269058 -102988472 + RSINE1 SINE B4 2 165 0 3 724 2202 139 37 37 chr12 18269243 18269430 -102988100 - RLTR14 LTR ERV1 0 382 207 3 724 1378 103 0 35 chr12 18269430 18269631 -102987899 + B2_Mm2 SINE B2 2 195 0 3 724 2202 139 37 37 chr12 18269631 18269825 -102987705 - RLTR14 LTR ERV1 -176 206 1 3 724 1225 41 7 0 chr12 18269947 18270093 -102987437 - B1_Mm SINE Alu 0 147 1 3 724 389 250 117 41 chr12 18270278 18270449 -102987081 + Charlie21a DNA MER1_type 224 407 -806 3 724 201 74 0 0 chr12 18271056 18271083 -102986447 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 724 240 59 0 0 chr12 18271083 18271116 -102986414 + (CAGAGA)n Simple_repeat Simple_repeat 4 37 0 3 724 3797 37 5 0 chr12 18271160 18271594 -102985936 + RLTR10C LTR ERVK 1 436 0 3 724 849 169 218 21 chr12 18271857 18272045 -102985485 + URR1B DNA MER1_type 1 225 0 3 724 289 338 65 0 chr12 18272139 18272278 -102985252 + MER65D LTR ERV1 191 338 -135 3 724 1198 34 0 7 chr12 18272280 18272428 -102985102 - B1_Mus2 SINE Alu 0 147 1 3 724 989 171 193 0 chr12 18272456 18272637 -102984893 - B3 SINE B2 0 216 1 3 724 226 152 34 0 chr12 18272747 18272806 -102984724 + CT-rich Low_complexity Low_complexity 2 62 0 3 724 5608 139 33 13 chr12 18272980 18273915 -102983615 + RMER17B LTR ERVK 1 954 -4 3 724 213 65 0 0 chr12 18274025 18274056 -102983474 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 724 1142 72 0 0 chr12 18274056 18274194 -102983336 - B1_Mus2 SINE Alu -9 138 1 3 724 192 200 43 0 chr12 18274266 18274336 -102983194 + CT-rich Low_complexity Low_complexity 2 74 0 3 724 628 254 48 0 chr12 18274576 18274741 -102982789 - ID_B1 SINE B4 -1 223 51 3 724 501 296 14 0 chr12 18274727 18274869 -102982661 - ID_B1 SINE B4 -10 214 71 4 724 21 57 0 0 chr12 18274886 18274921 -102982609 + AT_rich Low_complexity Low_complexity 1 35 0 4 724 414 296 86 29 chr12 18274926 18275065 -102982465 + B1F1 SINE Alu 2 148 -1 4 724 303 49 0 0 chr12 18275067 18275108 -102982422 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 724 24 32 0 0 chr12 18275146 18275177 -102982353 + AT_rich Low_complexity Low_complexity 1 31 0 4 724 2784 55 3 6 chr12 18275217 18275564 -102981966 - ORR1A1 LTR MaLR 0 346 1 4 724 12845 79 23 11 chr12 18275564 18275944 -102981586 - ORR1A1-int LTR MaLR 0 1792 1388 4 724 1433 50 50 0 chr12 18275944 18276124 -102981406 - B2_Mm2 SINE B2 -5 190 2 4 724 12845 79 23 11 chr12 18276124 18277513 -102980017 - ORR1A1-int LTR MaLR -405 1387 1 4 724 2900 55 0 26 chr12 18277517 18277868 -102979662 - ORR1A1 LTR MaLR -4 342 1 4 724 229 336 18 9 chr12 18277880 18277994 -102979536 + L1MC LINE L1 4457 4571 -1575 4 724 463 191 61 87 chr12 18278137 18278252 -102979278 + B1_Mur2 SINE Alu 38 149 0 4 724 960 262 80 83 chr12 18278357 18278719 -102978811 + MTE2a LTR MaLR 17 377 -2 4 724 1230 204 23 19 chr12 18278809 18279024 -102978506 + B3 SINE B2 1 216 0 4 724 779 210 35 14 chr12 18279050 18279195 -102978335 + B1_Mur4 SINE Alu 2 149 -1 4 724 292 258 123 14 chr12 18279342 18279487 -102978043 + L1MA7 LINE L1 6128 6289 -2 4 724 1090 185 26 0 chr12 18279489 18279678 -102977852 - B3 SINE B2 -10 206 13 4 724 219 284 25 86 chr12 18279611 18279692 -102977838 - ID4 SINE ID -6 77 2 4 724 404 348 52 0 chr12 18279864 18280019 -102977511 - MTE2a LTR MaLR -197 182 20 4 724 335 310 54 54 chr12 18280108 18280275 -102977255 + ID_B1 SINE B4 50 216 -8 4 724 272 0 0 24 chr12 18280303 18280345 -102977185 - L1Md_T LINE L1 -1 6581 6541 4 724 1011 275 51 25 chr12 18280606 18280670 -102976860 - B4 SINE B4 -8 284 215 4 724 198 71 0 0 chr12 18280670 18280698 -102976832 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 4 724 1011 275 51 25 chr12 18280698 18280909 -102976621 - B4 SINE B4 -78 214 2 4 724 229 234 91 27 chr12 18281140 18281250 -102976280 + L1MEg LINE L1 1480 1596 -4646 4 724 467 297 79 20 chr12 18281300 18281606 -102975924 + L1MA4 LINE L1 5636 5928 -372 4 724 2802 40 9 44 chr12 18281916 18282255 -102975275 - IAPLTR2b LTR ERVK 0 327 1 4 724 53287 41 14 22 chr12 18282257 18288857 -102968673 - IAPEz-int LTR ERVK -2 6479 9 4 724 1832 37 12 59 chr12 18288858 18289114 -102968416 - IAPLTR2b LTR ERVK 0 327 84 4 724 2099 124 234 26 chr12 18289114 18289568 -102967962 - RLTR6_Mm LTR ERV1 -70 584 37 4 724 249 228 200 38 chr12 18289570 18289675 -102967855 - RLTR6_Mm LTR ERV1 -532 122 1 4 724 741 79 9 12 chr12 18289675 18289761 -102967769 - IAPLTR2a LTR ERVK -277 90 2 4 724 1078 257 114 53 chr12 18289918 18290049 -102967481 + L1MEg LINE L1 4455 4593 -1553 4 724 2408 169 95 42 chr12 18290049 18290555 -102966975 + RMER16 LTR ERVK 1 533 0 4 724 1078 257 114 53 chr12 18290555 18290974 -102966556 + L1MEg LINE L1 4594 5039 -1107 4 724 189 147 0 0 chr12 18290989 18291023 -102966507 + (GGA)n Simple_repeat Simple_repeat 3 36 0 4 724 715 259 25 56 chr12 18291032 18291228 -102966302 + B3A SINE B2 3 192 -6 4 724 23 0 0 0 chr12 18291233 18291256 -102966274 + AT_rich Low_complexity Low_complexity 1 23 0 4 724 1232 271 40 3 chr12 18291275 18291597 -102965933 + MLT2C2 LTR ERVL 1 334 -130 4 724 432 0 0 0 chr12 18291622 18291670 -102965860 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 724 432 165 0 0 chr12 18291670 18291785 -102965745 + GA-rich Low_complexity Low_complexity 2 116 0 4 724 3303 79 7 45 chr12 18292441 18292906 -102964624 + L1_Mus3 LINE L1 6176 6622 -16 4 724 31 26 0 0 chr12 18292906 18292944 -102964586 + AT_rich Low_complexity Low_complexity 1 38 0 4 724 297 0 0 0 chr12 18294164 18294197 -102963333 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 724 762 61 0 0 chr12 18294201 18294299 -102963231 - B1_Mus2 SINE Alu -7 140 43 4 724 291 173 91 26 chr12 18294237 18294314 -102963216 - RLTR25B LTR ERVK -519 509 428 4 724 446 82 49 0 chr12 18296288 18296349 -102961181 - PB1D9 SINE Alu -56 64 1 4 724 13620 102 32 5 chr12 18296353 18298334 -102959196 + L1_Mm LINE L1 3793 5827 -56 4 724 229 271 110 39 chr12 18298318 18298445 -102959085 - L1MEg LINE L1 -2150 3996 3861 4 724 550 253 81 19 chr12 18298716 18298965 -102958565 - L1MA4 LINE L1 -387 5913 5645 4 724 260 215 45 15 chr12 18299120 18299186 -102958344 - L1MEg LINE L1 -4714 1528 1461 4 724 423 0 0 0 chr12 18299189 18299236 -102958294 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 4 724 5768 33 0 5 chr12 18299239 18299879 -102957651 - L1Md_F2 LINE L1 -15 6567 5931 4 724 927 305 13 101 chr12 18300106 18300412 -102957118 + B4 SINE B4 2 280 -12 4 724 8236 104 31 9 chr12 18300698 18301936 -102955594 + L1_Mm LINE L1 2965 4229 -1654 4 724 22459 75 2 2 chr12 18301946 18305732 -102951798 + L1Md_F LINE L1 403 4186 -1697 4 724 2396 78 77 15 chr12 18305732 18306057 -102951473 - IAPLTR4 LTR ERVK 0 345 1 4 724 6330 243 42 39 chr12 18306057 18308568 -102948962 - IAPLTR3-int LTR ERVK -273 7240 5064 4 724 820 103 35 49 chr12 18308679 18308822 -102948708 - IAPLTR3-int LTR ERVK -2911 4670 4530 4 724 434 213 12 35 chr12 18308834 18308959 -102948571 - IAPLTR3-int LTR ERVK -2380 2464 2357 4 724 7112 105 71 6 chr12 18308964 18310337 -102947193 - ETnERV3-int LTR ERVK -3135 4271 2732 4 724 328 244 0 65 chr12 18310346 18310438 -102947092 - ETnERV3-int LTR ERVK -4867 2539 2454 4 724 484 212 88 0 chr12 18310451 18310564 -102946966 - RMER16-int LTR ERVK -5077 1060 938 4 724 1075 204 92 125 chr12 18310551 18311091 -102946439 - RMER16-int LTR ERVK -4783 623 251 4 724 2254 275 45 103 chr12 18311203 18312254 -102945276 - IAPLTR3-int LTR ERVK -5867 954 1 4 724 2460 86 60 27 chr12 18312254 18312588 -102944942 - IAPLTR4 LTR ERVK 0 345 1 4 724 11590 53 0 0 chr12 18312588 18313994 -102943536 + L1Md_F2 LINE L1 4181 5586 -297 4 724 8200 60 1 26 chr12 18313995 18315014 -102942516 + L1Md_F2 LINE L1 5588 6580 -2 4 724 236 132 169 42 chr12 18315014 18315085 -102942445 + RLTR21 LTR ERVK 1016 1095 -477 4 724 12004 85 14 3 chr12 18315088 18317417 -102940113 + L1_Mus1 LINE L1 4214 6566 -1 4 724 576 42 0 0 chr12 18317425 18317496 -102940034 + (GAAAA)n Simple_repeat Simple_repeat 2 72 0 4 724 466 319 22 7 chr12 18317496 18317635 -102939895 - B1F SINE Alu -7 142 2 4 724 380 312 18 61 chr12 18317635 18317653 -102939877 - ID_B1 SINE B4 -7 217 66 4 724 348 336 51 25 chr12 18317753 18317930 -102939600 + MTEa LTR MaLR 20 200 -179 4 724 250 267 12 74 chr12 18318082 18318163 -102939367 + ID4 SINE ID 2 77 -6 4 724 764 158 0 0 chr12 18318096 18318210 -102939320 + B3 SINE B2 13 126 -90 4 724 832 194 7 0 chr12 18318374 18318518 -102939012 - B1_Mus1 SINE Alu 0 148 4 4 724 1195 204 23 19 chr12 18318546 18318761 -102938769 - B3 SINE B2 0 216 1 4 724 1019 271 57 76 chr12 18318851 18319219 -102938311 - MTE2a LTR MaLR -2 377 17 4 724 388 160 163 41 chr12 18319323 18319345 -102938185 - B1_Mus2 SINE Alu 0 147 119 4 724 522 0 0 0 chr12 18319345 18319403 -102938127 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 724 415 187 93 0 chr12 18319403 18319478 -102938052 - B1_Mur2 SINE Alu -30 119 38 4 724 297 287 84 22 chr12 18319620 18319798 -102937732 - L1M5 LINE L1 -1573 4573 4385 4 724 528 16 0 0 chr12 18319855 18319916 -102937614 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 724 311 280 186 0 chr12 18319920 18320038 -102937492 - B1F1 SINE Alu -7 142 3 4 724 370 324 10 0 chr12 18320120 18320222 -102937308 + ID_B1 SINE B4 110 212 -12 4 724 264 282 69 52 chr12 18320222 18320236 -102937294 + B1_Mm SINE Alu 29 146 -1 4 724 378 280 114 0 chr12 18320237 18320273 -102937257 + B1F SINE Alu 2 148 -1 4 724 536 219 0 0 chr12 18320273 18320369 -102937161 + ID_B1 SINE B4 128 223 -1 4 724 929 193 193 0 chr12 18320634 18320815 -102936715 + B3 SINE B2 1 216 0 4 724 923 171 200 16 chr12 18321039 18321229 -102936301 - URR1B DNA MER1_type 0 225 1 4 724 1055 8 8 0 chr12 18321534 18321658 -102935872 + (TC)n Simple_repeat Simple_repeat 2 126 0 4 724 452 251 103 40 chr12 18322269 18322443 -102935087 - Charlie21a DNA MER1_type -806 407 223 4 724 2063 168 67 6 chr12 18322707 18323067 -102934463 + RLTR14 LTR ERV1 1 382 0 4 724 285 29 0 0 chr12 18323257 18323291 -102934239 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 724 486 309 0 9 chr12 18323318 18323426 -102934104 - RSINE1 SINE B4 -52 113 7 4 724 195 318 125 0 chr12 18323449 18323537 -102933993 + L2c LINE L2 3256 3354 -33 4 724 701 274 0 52 chr12 18323571 18323744 -102933786 - RSINE1 SINE B4 0 165 2 4 724 23 0 0 0 chr12 18323748 18323771 -102933759 + AT_rich Low_complexity Low_complexity 1 23 0 4 724 1172 119 84 17 chr12 18323902 18323923 -102933607 - B2_Mm2 SINE B2 -1 194 159 4 724 279 0 0 0 chr12 18323923 18323954 -102933576 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 4 724 1172 119 84 17 chr12 18323954 18324111 -102933419 - B2_Mm2 SINE B2 -37 158 4 4 724 7353 115 6 5 chr12 18324886 18326314 -102931216 + L1_Mus3 LINE L1 5209 6638 0 4 724 1050 248 5 0 chr12 18326386 18326600 -102930930 - B3 SINE B2 -1 215 1 4 724 180 0 0 0 chr12 18326614 18326634 -102930896 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 724 32 0 0 0 chr12 18326638 18326670 -102930860 + AT_rich Low_complexity Low_complexity 1 32 0 4 724 250 279 114 0 chr12 18326677 18326756 -102930774 - RSINE1 SINE B4 -2 163 76 4 724 432 0 0 0 chr12 18326773 18326821 -102930709 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 724 510 290 141 6 chr12 18326828 18327005 -102930525 - B4 SINE B4 -43 249 49 4 724 353 64 0 0 chr12 18327790 18327837 -102929693 - B1_Mus2 SINE Alu -99 48 2 4 724 728 62 10 0 chr12 18327837 18327934 -102929596 + B1_Mm SINE Alu 50 147 0 4 724 1634 97 12 31 chr12 18327957 18328213 -102929317 - L1_Mm LINE L1 -2085 3798 3548 4 724 183 42 0 0 chr12 18328935 18328959 -102928571 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 724 1156 92 0 0 chr12 18328961 18329103 -102928427 - B1_Mus1 SINE Alu -4 144 3 4 724 1053 198 56 5 chr12 18329127 18329325 -102928205 - B3 SINE B2 -8 208 1 4 724 546 297 111 40 chr12 18329487 18329992 -102927538 - L1MC3 LINE L1 -370 7415 6875 4 724 3139 182 132 15 chr12 18329997 18330399 -102927131 - RMER19A LTR ERVK 0 737 293 4 724 3201 88 5 0 chr12 18330399 18330797 -102926733 + MTB LTR MaLR 1 400 0 5 724 3139 182 132 15 chr12 18330797 18331054 -102926476 - RMER19A LTR ERVK -445 292 1 4 724 227 293 19 83 chr12 18331752 18331860 -102925670 - PB1D10 SINE Alu -6 111 11 5 724 2298 171 45 0 chr12 18333599 18334002 -102923528 + MTC LTR MaLR 1 421 0 5 724 282 276 84 84 chr12 18334318 18334472 -102923058 + MIRb SINE MIR 85 238 -30 5 724 3082 73 10 0 chr12 18334822 18335217 -102922313 + MTB LTR MaLR 2 400 0 5 724 194 0 39 0 chr12 18335615 18335641 -102921889 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 5 724 233 308 39 93 chr12 18336245 18336449 -102921081 - RLTR25A LTR ERVK -5 1098 906 5 724 338 246 72 30 chr12 18336384 18336518 -102921012 - PB1D7 SINE Alu 0 149 13 5 724 762 230 39 28 chr12 18336715 18336894 -102920636 + B3 SINE B2 34 214 -2 5 724 816 31 0 0 chr12 18336977 18337075 -102920455 - B1_Mus2 SINE Alu -9 138 41 5 724 312 117 31 77 chr12 18337026 18337091 -102920439 - 4.5SRNA scRNA scRNA -8 86 25 5 724 296 232 38 145 chr12 18337105 18337143 -102920387 + PB1D7 SINE Alu 3 119 -1 5 724 550 161 21 0 chr12 18337143 18337236 -102920294 + ID_B1 SINE B4 128 222 -2 5 724 252 0 0 0 chr12 18337473 18337501 -102920029 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 724 545 242 39 46 chr12 18337521 18337651 -102919879 - B1_Mur3 SINE Alu -17 132 4 5 724 685 208 15 0 chr12 18337675 18337805 -102919725 - ID_B1 SINE B4 -5 219 88 5 724 1266 165 9 18 chr12 18339303 18339531 -102917999 + URR1A DNA MER1_type 1 226 0 5 724 605 264 61 25 chr12 18340377 18340575 -102916955 + B4A SINE B4 2 206 -86 5 724 613 238 0 38 chr12 18340803 18340934 -102916596 + RSINE1 SINE B4 3 128 -37 5 724 405 261 202 37 chr12 18340991 18341154 -102916376 - MER2 DNA MER2_type -149 196 7 5 724 201 245 0 20 chr12 18341613 18341663 -102915867 + G-rich Low_complexity Low_complexity 3 51 0 5 724 197 298 72 32 chr12 18341761 18341886 -102915644 + MIRb SINE MIR 14 143 -125 5 724 1874 152 13 10 chr12 18341886 18342198 -102915332 - MTC LTR MaLR 0 421 109 5 724 698 184 49 21 chr12 18342202 18342346 -102915184 + B1_Mur3 SINE Alu 2 149 0 5 724 513 115 0 0 chr12 18342361 18342448 -102915082 + (GA)n Simple_repeat Simple_repeat 1 87 0 5 724 711 0 0 0 chr12 18342448 18342527 -102915003 + (GAA)n Simple_repeat Simple_repeat 3 81 0 5 724 2957 50 147 0 chr12 18342531 18342932 -102914598 - MT2_Mm LTR ERVL -1 492 33 5 724 453 230 0 0 chr12 18342942 18343029 -102914501 - MTC LTR MaLR -334 87 1 5 724 248 186 14 33 chr12 18344131 18344192 -102913338 + MTE2a LTR MaLR 1 63 -316 5 724 21 0 0 0 chr12 18344192 18344213 -102913317 + AT_rich Low_complexity Low_complexity 1 21 0 5 724 748 233 105 11 chr12 18344222 18344413 -102913117 - B3 SINE B2 -6 210 2 5 724 838 153 27 14 chr12 18344438 18344584 -102912946 - B1_Mur3 SINE Alu -1 148 1 5 724 1258 189 0 5 chr12 18344615 18344838 -102912692 + URR1B DNA MER1_type 1 222 -3 5 724 788 225 149 75 chr12 18344841 18345149 -102912381 + MTE2a LTR MaLR 35 365 -14 5 724 317 303 48 48 chr12 18345256 18345360 -102912170 + RSINE1 SINE B4 34 137 -28 5 724 617 63 11 0 chr12 18345385 18345480 -102912050 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 724 282 87 0 0 chr12 18345480 18345526 -102912004 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 724 317 252 80 98 chr12 18345559 18345722 -102911808 + L1MEc LINE L1 280 439 -5961 5 90 38605 42 1 2 chr12 18346313 18352798 -102904732 - L1Md_T LINE L1 0 6585 9 5 725 1181 101 6 0 chr12 18353581 18353760 -102903770 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 725 591 143 15 15 chr12 18353763 18353808 -102903722 + polypyrimidine Low_complexity Low_complexity 89 135 0 5 725 1197 108 0 0 chr12 18353808 18354168 -102903362 + (TC)n Simple_repeat Simple_repeat 1 360 0 5 725 591 143 15 15 chr12 18354168 18354256 -102903274 + polypyrimidine Low_complexity Low_complexity 2 88 0 5 725 630 95 0 0 chr12 18354265 18354349 -102903181 - B2_Mm2 SINE B2 -109 86 3 5 725 355 279 0 0 chr12 18354424 18354510 -102903020 + PB1D10 SINE Alu 32 117 0 5 725 483 198 12 0 chr12 18354515 18354596 -102902934 + RSINE1 SINE B4 53 134 -31 5 725 463 271 22 22 chr12 18354580 18354716 -102902814 + B1F1 SINE Alu 13 148 -1 5 725 564 220 39 36 chr12 18354750 18354935 -102902595 + B3 SINE B2 17 195 0 5 725 774 230 30 18 chr12 18355499 18355663 -102901867 - B3A SINE B2 -30 168 3 5 725 242 276 93 17 chr12 18355743 18355861 -102901669 + L2c LINE L2 3038 3164 -223 5 725 327 303 28 0 chr12 18356048 18356157 -102901373 + PB1D7 SINE Alu 3 114 -6 5 725 288 330 17 42 chr12 18356165 18356285 -102901245 - MIRb SINE MIR -150 118 2 5 725 324 344 90 32 chr12 18357182 18357371 -102900159 + L1MD2 LINE L1 6084 6283 -76 5 725 688 299 43 25 chr12 18357441 18357719 -102899811 + B4A SINE B4 2 284 -8 5 725 975 133 178 16 chr12 18358011 18358202 -102899328 - URR1B DNA MER1_type 0 225 4 5 725 3673 64 0 0 chr12 18358265 18358793 -102898737 - L1Md_F2 LINE L1 -539 6043 5516 5 725 3826 91 2 6 chr12 18358794 18359324 -102898206 + L1Md_F2 LINE L1 6055 6582 0 5 725 3627 13 2 0 chr12 18359757 18360152 -102897378 - MTA_Mm LTR MaLR 0 396 1 5 725 9310 30 3 4 chr12 18360152 18361251 -102896279 - MTA_Mm-int LTR MaLR 0 1098 1 5 725 3627 13 2 0 chr12 18361251 18361646 -102895884 - MTA_Mm LTR MaLR 0 396 1 5 725 180 297 62 15 chr12 18361775 18361840 -102895690 + MIRc SINE MIR 86 153 -115 5 725 272 304 85 21 chr12 18361851 18361992 -102895538 - RMER15 LTR ERVL -10 565 416 5 725 318 235 0 26 chr12 18362265 18362347 -102895183 - MT2A LTR ERVL -501 83 3 5 725 897 265 19 57 chr12 18362826 18363118 -102894412 - MTE2b LTR MaLR 0 379 42 5 725 700 194 141 48 chr12 18363118 18363324 -102894206 + URR1A DNA MER1_type 1 225 -1 5 725 897 254 18 66 chr12 18363324 18363368 -102894162 - MTE2b LTR MaLR -338 41 1 5 725 474 140 0 29 chr12 18364170 18364273 -102893257 + G-rich Low_complexity Low_complexity 2 101 0 5 725 1117 88 0 0 chr12 18364592 18364739 -102892791 + B1_Mm SINE Alu 1 147 0 5 725 873 81 0 0 chr12 18364757 18364880 -102892650 + (GAAAA)n Simple_repeat Simple_repeat 3 125 0 5 725 693 132 107 0 chr12 18364914 18365035 -102892495 + B1_Mus1 SINE Alu 3 136 -12 5 725 1070 95 4 0 chr12 18365035 18365279 -102892251 + (TAAA)n Simple_repeat Simple_repeat 1 245 0 5 725 293 254 129 116 chr12 18365349 18365549 -102891981 + MLT1F1 LTR MaLR 141 334 -226 5 725 814 218 90 0 chr12 18365772 18365960 -102891570 + B3 SINE B2 3 207 -9 5 725 249 294 120 53 chr12 18365964 18365983 -102891547 + ID_B1 SINE B4 70 211 -13 5 725 442 200 167 35 chr12 18365983 18366097 -102891433 + B1_Mur2 SINE Alu 8 136 -13 5 725 834 150 18 0 chr12 18366102 18366269 -102891261 + GA-rich Low_complexity Low_complexity 1 170 0 5 725 750 101 0 36 chr12 18366427 18366592 -102890938 + (TCTCTG)n Simple_repeat Simple_repeat 2 160 0 5 725 360 43 0 0 chr12 18366592 18366638 -102890892 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 725 349 274 21 0 chr12 18368838 18368931 -102888599 + ID_B1 SINE B4 2 96 -128 5 725 1454 210 124 12 chr12 18368931 18369269 -102888261 - RLTR1 LTR ERV1 0 624 249 5 725 464 268 15 75 chr12 18369481 18369614 -102887916 + ID_B1 SINE B4 93 217 -7 5 725 1043 103 0 0 chr12 18369657 18369793 -102887737 + B1_Mus1 SINE Alu 1 136 -12 5 725 264 59 0 0 chr12 18369873 18369907 -102887623 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 725 503 349 37 0 chr12 18369946 18370161 -102887369 - L1MD LINE L1 -540 5819 5597 5 725 1163 75 7 0 chr12 18370186 18370332 -102887198 - B1_Mm SINE Alu 0 147 1 5 725 327 292 189 0 chr12 18370383 18370489 -102887041 - RSINE1 SINE B4 -36 129 4 5 725 2771 138 56 13 chr12 18370496 18370830 -102886700 + RMER17A2 LTR ERVK 1 353 -553 5 725 878 43 9 0 chr12 18370830 18370945 -102886585 + (TCTCC)n Simple_repeat Simple_repeat 1 116 0 5 725 2771 138 56 13 chr12 18370945 18371131 -102886399 + RMER17A2 LTR ERVK 354 542 -364 5 725 546 200 78 0 chr12 18372847 18372962 -102884568 - MT2A LTR ERVL -409 124 1 5 725 557 252 20 0 chr12 18372963 18373110 -102884420 - L1MD LINE L1 -676 5566 5417 5 725 707 187 15 0 chr12 18373124 18373258 -102884272 + B3A SINE B2 1 136 -62 5 725 545 248 206 61 chr12 18373313 18373445 -102884085 - RMER10A LTR ERVL 0 442 303 5 725 1009 37 15 0 chr12 18373445 18373579 -102883951 + (GA)n Simple_repeat Simple_repeat 1 136 0 5 725 545 248 206 61 chr12 18373579 18373776 -102883754 - RMER10A LTR ERVL -140 302 65 5 725 381 293 33 26 chr12 18374294 18374445 -102883085 + MLT1N2 LTR MaLR 406 557 -5 5 725 214 286 54 0 chr12 18374837 18374893 -102882637 - MIRm SINE MIR -121 155 97 5 725 984 274 13 17 chr12 18375371 18375601 -102881929 - MTE2b LTR MaLR -150 229 1 5 725 293 239 104 0 chr12 18375737 18375804 -102881726 + ID_B1 SINE B4 52 125 -99 5 725 304 262 35 78 chr12 18375764 18375817 -102881713 + PB1D10 SINE Alu 5 51 -66 5 725 868 171 7 0 chr12 18375817 18375963 -102881567 - B1_Mus1 SINE Alu -1 147 1 5 725 304 262 35 78 chr12 18375963 18376025 -102881505 + PB1D10 SINE Alu 52 115 -2 5 725 4725 148 14 1 chr12 18376453 18377144 -102880386 - ETnERV2-int LTR ERVK -213 7193 6494 5 725 941 277 15 12 chr12 18377176 18377533 -102879997 - RLTR45-int LTR ERVK -389 7828 7506 5 725 6186 149 70 93 chr12 18377535 18378628 -102878902 - RLTR45-int LTR ERVK -1173 6071 5041 5 725 1490 53 11 11 chr12 18378628 18378817 -102878713 - B2_Mm2 SINE B2 -5 190 2 5 725 6186 149 70 93 chr12 18378817 18379157 -102878373 - RLTR45-int LTR ERVK -2204 5040 4673 5 725 3239 59 2 0 chr12 18379145 18379551 -102877979 - ETnERV2-int LTR ERVK -1644 5762 5356 5 725 9996 148 48 30 chr12 18379549 18381555 -102875975 - ETnERV2-int LTR ERVK -2727 4679 2935 5 725 681 175 25 0 chr12 18381570 18381690 -102875840 - RMER16-int LTR ERVK -5077 1060 938 5 725 1790 170 202 42 chr12 18381765 18382244 -102875286 - RMER16-int LTR ERVK -4595 811 256 5 725 749 219 8 0 chr12 18383100 18383228 -102874302 - ETnERV2-int LTR ERVK -213 7193 7065 5 725 263 276 60 165 chr12 18383342 18383413 -102874117 - MLT1B LTR MaLR -63 327 254 5 725 2684 92 25 8 chr12 18383413 18383806 -102873724 + MTB LTR MaLR 1 400 0 5 725 263 276 60 165 chr12 18383806 18383916 -102873614 - MLT1B LTR MaLR -137 253 165 5 725 681 241 90 27 chr12 18383945 18384167 -102873363 + B4A SINE B4 3 238 -54 5 725 642 13 0 0 chr12 18384648 18384723 -102872807 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 6 725 486 49 0 0 chr12 18384737 18384798 -102872732 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 6 725 296 304 54 0 chr12 18384827 18384845 -102872685 - ID_B1 SINE B4 -127 97 1 6 725 320 257 40 0 chr12 18384845 18384919 -102872611 - ID4_ SINE ID -6 77 1 6 725 873 203 0 13 chr12 18384932 18385082 -102872448 - B1_Mur1 SINE Alu 0 149 2 6 725 835 153 7 0 chr12 18385142 18385286 -102872244 + B1_Mus1 SINE Alu 3 147 -1 6 725 607 280 38 6 chr12 18385409 18385567 -102871963 - RSINE1 SINE B4 0 165 3 6 725 447 223 118 35 chr12 18385713 18385857 -102871673 - MTD-int LTR MaLR -1102 156 1 6 725 1160 205 238 12 chr12 18385863 18386203 -102871327 - MTD LTR MaLR 0 419 3 6 725 1165 69 7 0 chr12 18386364 18386508 -102871022 + B1_Mm SINE Alu 3 147 0 6 725 321 252 172 0 chr12 18387163 18387262 -102870268 - PB1D10 SINE Alu 0 117 2 6 725 1226 311 81 113 chr12 18387630 18388337 -102869193 - MER63C DNA AcHobo -5 925 242 6 725 741 186 21 7 chr12 18388606 18388747 -102868783 + B1_Mur1 SINE Alu 1 143 -6 6 725 653 252 87 12 chr12 18388890 18389083 -102868447 + B3 SINE B2 13 215 -1 6 725 260 308 0 0 chr12 18389091 18389156 -102868374 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 725 470 226 157 86 chr12 18389172 18389250 -102868280 + B3 SINE B2 3 99 -117 6 725 846 114 30 22 chr12 18389250 18389385 -102868145 + B1_Mus1 SINE Alu 2 137 -11 6 725 369 0 0 0 chr12 18389386 18389427 -102868103 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 6 725 470 226 157 86 chr12 18389427 18389486 -102868044 + B3 SINE B2 100 152 -64 6 725 520 216 54 0 chr12 18390370 18390481 -102867049 - PB1D9 SINE Alu -2 118 2 6 725 1073 96 0 14 chr12 18390531 18390679 -102866851 + B1_Mus2 SINE Alu 2 147 0 6 725 1515 212 100 8 chr12 18391097 18391477 -102866053 - MTD LTR MaLR 0 419 5 6 725 447 359 38 12 chr12 18391702 18391942 -102865588 - MER46C DNA MER2_type -1 337 92 6 725 810 197 0 14 chr12 18391960 18392104 -102865426 - B1_Mur3 SINE Alu -6 143 2 6 725 410 210 12 0 chr12 18392225 18392306 -102865224 + ID2 SINE ID 2 83 0 6 725 603 187 0 16 chr12 18392355 18392607 -102864923 + (TG)n Simple_repeat Simple_repeat 1 247 0 6 725 249 196 0 18 chr12 18394204 18394261 -102863269 + (CCCCG)n Simple_repeat Simple_repeat 5 60 0 6 725 3469 73 23 12 chr12 18395927 18396409 -102861121 - MURVY-LTR LTR ERV1 -32 487 1 6 725 2589 96 9 171 chr12 18397489 18398056 -102859474 + IAPLTR2_Mm LTR ERVK 1 475 0 6 725 317 280 0 8 chr12 18398691 18398792 -102858738 - B4A SINE B4 -195 97 1 6 725 278 387 17 0 chr12 18400143 18400262 -102857268 - MER3 DNA MER1_type -78 131 11 6 725 291 329 32 83 chr12 18400271 18400427 -102857103 + MER5A1 DNA MER1_type 19 166 0 6 725 194 286 11 56 chr12 18400501 18400590 -102856940 - MER5B DNA MER1_type -62 116 32 6 725 529 246 144 12 chr12 18400999 18401172 -102856358 - B3A SINE B2 0 198 3 6 725 200 103 0 49 chr12 18401456 18401497 -102856033 + T-rich Low_complexity Low_complexity 2 40 0 6 725 1029 90 21 7 chr12 18401500 18401645 -102855885 - B1_Mus2 SINE Alu 0 147 1 6 725 608 161 211 0 chr12 18401716 18401896 -102855634 + Lx9 LINE L1 7425 7642 -2 6 725 5215 129 25 32 chr12 18402708 18403602 -102853928 - RMER17D LTR ERVK -2 887 1 6 725 522 234 28 128 chr12 18404163 18404374 -102853156 - L1_Mur3 LINE L1 -4044 1836 1647 6 725 897 242 10 20 chr12 18404551 18404753 -102852777 + RLTR1D LTR ERV1 48 247 -358 6 725 1711 225 20 86 chr12 18404753 18405205 -102852325 + RLTR1D LTR ERV1 184 605 0 6 725 285 183 49 0 chr12 18405206 18405288 -102852242 - L1_Mur3 LINE L1 -4478 1399 1314 6 725 463 264 29 34 chr12 18405585 18405789 -102851741 - L1_Mur3 LINE L1 -6622 1106 904 6 725 1745 220 19 7 chr12 18407414 18407826 -102849704 - Lx4B LINE L1 -1005 6053 5637 6 725 1449 320 46 71 chr12 18407836 18408555 -102848975 + ORR1D-int LTR MaLR 562 1262 -108 6 725 270 220 73 41 chr12 18408662 18408785 -102848745 - Lx4B LINE L1 -11 7047 6921 6 725 286 244 35 78 chr12 18408999 18409100 -102848430 - B3 SINE B2 -100 95 3 6 725 9076 198 36 31 chr12 18409193 18410316 -102847214 + MurSatRep1 Unknown Unknown 2 1126 -1011 6 725 1149 137 6 6 chr12 18410316 18410499 -102847031 - B2_Mm1a SINE B2 -9 184 2 6 725 9076 198 36 31 chr12 18410499 18411498 -102846032 + MurSatRep1 Unknown Unknown 1127 2135 -2 6 725 477 262 33 35 chr12 18411611 18411918 -102845612 + MMSAT4 Satellite Satellite 1 306 -5 6 725 596 311 76 45 chr12 18411872 18412928 -102844602 + MurSatRep1 Unknown Unknown 1691 2137 0 6 725 376 280 35 15 chr12 18412871 18413089 -102844441 + MMSAT4 Satellite Satellite 1 222 -12 6 725 285 256 31 143 chr12 18413065 18413139 -102844391 + MurSatRep1 Unknown Unknown 1852 1921 -216 6 725 3000 94 0 2 chr12 18413139 18413545 -102843985 + L1_Mus1 LINE L1 6163 6567 0 6 725 285 256 31 143 chr12 18413545 18413562 -102843968 + MurSatRep1 Unknown Unknown 1922 2044 -88 6 725 378 280 8 8 chr12 18413562 18413688 -102843842 + MMSAT4 Satellite Satellite 43 168 0 6 725 327 269 0 0 chr12 18413942 18414020 -102843510 + ORR1C2 LTR MaLR 293 370 -14 6 725 889 146 21 0 chr12 18414312 18414456 -102843074 + B1_Mus1 SINE Alu 2 148 0 6 725 290 59 3 0 chr12 18414470 18414512 -102843018 - L1M4 LINE L1 -2402 3744 3683 6 725 1132 23 0 0 chr12 18414509 18414638 -102842892 + L1_Mm LINE L1 3695 3823 -2060 6 725 2221 65 3 0 chr12 18414638 18414931 -102842599 + L1_Mm LINE L1 3461 3754 -2129 6 725 1120 243 76 12 chr12 18414931 18415591 -102841939 - L1_Mur3 LINE L1 -4231 1646 1002 6 725 324 0 0 0 chr12 18416146 18416182 -102841348 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 725 252 238 0 0 chr12 18416182 18416245 -102841285 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 725 610 222 58 16 chr12 18416292 18416480 -102841050 - Lx2B LINE L1 -162 6814 6625 6 725 402 197 0 30 chr12 18416523 18416830 -102840700 + (TA)n Simple_repeat Simple_repeat 1 297 0 6 725 264 59 0 0 chr12 18416832 18416866 -102840664 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 6 725 606 303 39 19 chr12 18417050 18417260 -102840270 + RLTR11A2 LTR ERVK 132 346 -181 6 725 1113 78 0 0 chr12 18417260 18417402 -102840128 + B1_Mm SINE Alu 1 142 -5 6 725 448 342 75 19 chr12 18417402 18417459 -102840071 + RLTR11A2 LTR ERVK 346 414 -114 6 725 233 333 50 20 chr12 18417430 18417531 -102839999 + RLTR11A2 LTR ERVK 334 437 -91 6 725 340 274 78 73 chr12 18417531 18417736 -102839794 - L1MEa LINE L1 -5095 975 770 6 725 410 208 23 5 chr12 18417959 18418183 -102839347 + (CA)n Simple_repeat Simple_repeat 1 228 0 6 725 326 216 35 6 chr12 18418222 18418394 -102839136 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 725 342 225 38 0 chr12 18419031 18419111 -102838419 + L1MC1 LINE L1 6251 6333 0 6 725 2171 90 65 12 chr12 18419121 18419457 -102838073 + L1_Mus3 LINE L1 6279 6632 -6 6 725 715 291 23 0 chr12 18419465 18419637 -102837893 + B3A SINE B2 1 176 -22 6 725 252 303 72 38 chr12 18420023 18420212 -102837318 + MIR SINE MIR 2 208 -60 6 725 2077 55 0 128 chr12 18421791 18422126 -102835404 - RLTR10B LTR ERVK 0 292 1 6 725 284 237 64 26 chr12 18424625 18424703 -102832827 + PB1D10 SINE Alu 23 103 -14 6 725 798 200 0 20 chr12 18424705 18424858 -102832672 + B1_Mur4 SINE Alu 1 150 0 6 725 773 226 28 37 chr12 18424882 18425098 -102832432 + ID_B1 SINE B4 3 216 -8 6 725 624 266 24 77 chr12 18425992 18426200 -102831330 + B4A SINE B4 24 220 -72 6 725 467 313 65 16 chr12 18426217 18426402 -102831128 + B3A SINE B2 2 195 -3 6 725 947 147 0 0 chr12 18426423 18426559 -102830971 + B1_Mur4 SINE Alu 1 136 -14 6 725 624 102 0 0 chr12 18426646 18426744 -102830786 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 725 2242 91 0 70 chr12 18426744 18427087 -102830443 + ORR1A2 LTR MaLR 5 323 -4 6 725 252 167 0 0 chr12 18427125 18427173 -102830357 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 725 308 211 41 27 chr12 18427180 18427253 -102830277 + HAL1-3A_ME LINE L1 1978 2051 -807 6 725 640 255 33 13 chr12 18427911 18428062 -102829468 - RSINE1 SINE B4 -1 164 11 6 725 366 281 54 8 chr12 18428556 18428685 -102828845 - MER33 DNA MER1_type -1 323 189 6 725 703 206 184 5 chr12 18428736 18428926 -102828604 - URR1B DNA MER1_type -1 224 1 6 725 198 179 0 0 chr12 18429132 18429188 -102828342 + GA-rich Low_complexity Low_complexity 2 57 0 6 725 444 163 23 0 chr12 18431497 18431626 -102825904 + (TG)n Simple_repeat Simple_repeat 1 132 0 6 725 631 161 7 7 chr12 18432558 18432696 -102824834 + CT-rich Low_complexity Low_complexity 1 138 0 6 725 256 280 93 93 chr12 18433251 18433444 -102824086 - RLTR25A LTR ERVK -5 1098 906 6 725 479 184 36 5 chr12 18433409 18433520 -102824010 - B1_Mur3 SINE Alu 0 120 13 6 725 277 262 61 61 chr12 18433442 18433556 -102823974 - B4 SINE B4 -113 179 66 6 725 672 247 49 41 chr12 18433691 18433899 -102823631 + B3 SINE B2 1 216 0 6 725 539 220 68 8 chr12 18433970 18434103 -102823427 + ID_B1 SINE B4 82 222 -2 6 725 387 0 0 0 chr12 18434338 18434381 -102823149 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 725 504 274 16 24 chr12 18434381 18434508 -102823022 - B1_Mus1 SINE Alu -22 126 1 6 725 817 155 16 0 chr12 18434530 18434659 -102822871 - ID_B1 SINE B4 -6 218 88 6 725 226 170 0 36 chr12 18435908 18435963 -102821567 + G-rich Low_complexity Low_complexity 2 54 0 6 725 232 300 81 24 chr12 18436063 18436186 -102821344 + MIRb SINE MIR 14 143 -125 6 725 2490 133 19 46 chr12 18436188 18436506 -102821024 - MTC LTR MaLR 0 421 116 6 725 727 157 56 28 chr12 18436506 18436650 -102820880 + B1_Mur3 SINE Alu 2 149 0 6 725 597 64 0 0 chr12 18436654 18436732 -102820798 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 6 725 2490 133 19 46 chr12 18436732 18436841 -102820689 - MTC LTR MaLR -306 115 1 6 725 1411 85 5 5 chr12 18437444 18437633 -102819897 + B2_Mm2 SINE B2 2 190 -5 7 725 747 221 94 26 chr12 18438212 18438403 -102819127 - B3 SINE B2 -8 208 5 7 725 893 153 21 0 chr12 18438431 18438575 -102818955 - B1_Mus1 SINE Alu -1 147 1 7 725 1408 158 0 5 chr12 18438606 18438829 -102818701 + URR1B DNA MER1_type 1 222 -3 7 725 755 220 176 98 chr12 18438832 18439139 -102818391 + MTE2a LTR MaLR 35 365 -14 7 725 377 330 43 43 chr12 18439246 18439363 -102818167 + RSINE1 SINE B4 34 150 -15 7 725 369 0 0 0 chr12 18439379 18439420 -102818110 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 725 578 14 14 0 chr12 18439420 18439490 -102818040 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 725 794 206 297 7 chr12 18440872 18441155 -102816375 - MTC LTR MaLR 0 421 57 7 725 24 0 0 0 chr12 18441170 18441194 -102816336 + AT_rich Low_complexity Low_complexity 1 24 0 7 725 333 208 0 0 chr12 18441230 18441283 -102816247 + RSINE1 SINE B4 82 134 -31 7 725 466 260 55 8 chr12 18441276 18441404 -102816126 + B1F1 SINE Alu 16 149 0 7 725 607 248 12 38 chr12 18441435 18441626 -102815904 + B3 SINE B2 15 195 0 7 725 1605 147 25 95 chr12 18441770 18442086 -102815444 + ORR1B1 LTR MaLR 41 334 -60 7 725 2033 69 3 85 chr12 18442086 18442404 -102815126 + RLTR10B LTR ERVK 1 292 0 7 725 1599 78 10 12 chr12 18442404 18442724 -102814806 + MMERVK10C-int LTR ERVK 1 399 -7182 7 725 36817 60 2 6 chr12 18442722 18444360 -102813170 + MMERVK10C-int LTR ERVK 870 2511 -5070 7 725 2909 21 0 0 chr12 18444360 18444686 -102812844 - IAPLTR3 LTR ERVK 0 326 1 7 725 36817 60 2 6 chr12 18444686 18447559 -102809971 + MMERVK10C-int LTR ERVK 2512 5364 -2217 7 725 986 186 0 0 chr12 18447559 18447736 -102809794 + L1Md_F2 LINE L1 160 336 -6283 7 725 33727 73 4 0 chr12 18447730 18452641 -102804889 + L1Md_F2 LINE L1 563 5589 -297 7 725 8018 59 0 3 chr12 18452641 18453640 -102803890 + L1Md_F2 LINE L1 5590 6585 0 7 725 3539 67 13 2 chr12 18453642 18454090 -102803440 + MMERVK10C-int LTR ERVK 5358 5810 -1771 7 725 4648 80 7 0 chr12 18454081 18454119 -102803411 + MMERVK10C-int LTR ERVK 6651 6688 -893 7 725 306 0 0 0 chr12 18454119 18454153 -102803377 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 725 4648 96 11 3 chr12 18454153 18455107 -102802423 + MMERVK10C-int LTR ERVK 6689 7680 0 7 725 323 0 0 0 chr12 18455107 18455149 -102802381 + RLTR10B LTR ERVK 1 42 -250 7 725 1997 60 0 50 chr12 18455157 18455456 -102802074 + RLTR10B LTR ERVK 9 292 0 7 725 282 200 0 0 chr12 18455456 18455507 -102802023 + ORR1B1 LTR MaLR 344 394 0 7 725 635 180 15 30 chr12 18456080 18456233 -102801297 + B1_Mur4 SINE Alu 4 150 0 7 725 1337 64 46 6 chr12 18456243 18456417 -102801113 + B2_Mm2 SINE B2 1 181 -14 7 725 224 152 21 21 chr12 18456606 18456653 -102800877 - B1_Mus2 SINE Alu -93 54 8 7 725 375 236 45 0 chr12 18456680 18456769 -102800761 - PB1D10 SINE Alu -8 109 17 7 725 1178 235 19 19 chr12 18456857 18457126 -102800404 - B4 SINE B4 -19 273 5 7 725 465 300 8 8 chr12 18457383 18457514 -102800016 + ID_B1 SINE B4 69 199 -25 7 725 414 0 0 0 chr12 18457543 18457589 -102799941 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 7 725 295 179 41 12 chr12 18457592 18457762 -102799768 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 7 725 641 13 13 0 chr12 18457814 18457892 -102799638 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 7 725 283 291 112 52 chr12 18458406 18458540 -102798990 + ID_B1 SINE B4 79 220 -4 7 725 341 256 0 37 chr12 18458550 18458631 -102798899 + ID4_ SINE ID 3 80 -3 7 725 12031 66 26 23 chr12 18458847 18459382 -102798148 - RLTR22_Mus LTR ERVK 0 1808 1300 7 725 549 110 0 0 chr12 18459382 18459473 -102798057 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 725 12031 66 26 23 chr12 18459473 18460740 -102796790 - RLTR22_Mus LTR ERVK -509 1299 2 7 725 1418 95 53 18 chr12 18460765 18460991 -102796539 - MTC LTR MaLR -183 238 5 7 725 762 48 0 0 chr12 18461373 18461476 -102796054 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 725 660 258 147 5 chr12 18462435 18462626 -102794904 + ID_B1 SINE B4 7 224 0 7 725 1934 161 65 3 chr12 18462713 18463081 -102794449 - MTC LTR MaLR -30 391 1 7 725 571 148 13 0 chr12 18463470 18463619 -102793911 + (TAGA)n Simple_repeat Simple_repeat 3 153 0 7 725 739 217 30 18 chr12 18464113 18464277 -102793253 - B3A SINE B2 -30 168 3 7 725 213 257 71 0 chr12 18464357 18464427 -102793103 + L2b LINE L2 3036 3110 -265 7 725 582 68 0 0 chr12 18464443 18464517 -102793013 + L1_Mus1 LINE L1 6411 6484 -83 7 725 2250 61 15 9 chr12 18464517 18464816 -102792714 + RLTR10 LTR ERVK 1 302 -88 7 725 975 100 0 0 chr12 18464816 18464956 -102792574 + L1_Mus2 LINE L1 6427 6566 0 7 725 2250 61 15 9 chr12 18464956 18464985 -102792545 + RLTR10 LTR ERVK 303 331 -59 7 725 314 262 87 10 chr12 18465025 18465129 -102792401 + PB1D7 SINE Alu 3 114 -6 7 725 281 307 8 42 chr12 18465136 18465255 -102792275 - MIRb SINE MIR -149 119 5 7 725 2186 72 9 51 chr12 18466379 18466715 -102790815 + RLTRETN_Mm LTR ERVK 1 322 0 7 725 25308 56 5 17 chr12 18466716 18470125 -102787405 + MMETn-int LTR ERVK 2 4625 -2781 7 725 10721 97 12 24 chr12 18470184 18471740 -102785790 + MMETn-int LTR ERVK 3307 4844 0 7 725 2248 72 6 50 chr12 18471740 18472077 -102785453 + RLTRETN_Mm LTR ERVK 1 322 0 7 725 631 314 43 32 chr12 18472157 18472437 -102785093 + B4A SINE B4 2 284 -8 7 725 850 119 0 20 chr12 18472730 18472876 -102784654 - URR1B DNA MER1_type 0 225 83 7 725 2803 31 3 0 chr12 18473487 18473812 -102783718 + IAPLTR3 LTR ERVK 1 326 0 7 725 60749 19 6 10 chr12 18473812 18480639 -102776891 + IAPLTR3-int LTR ERVK 1 6802 -19 7 725 502 253 122 14 chr12 18480691 18480839 -102776691 + RSINE1 SINE B4 2 165 0 7 725 216 0 0 0 chr12 18480842 18480866 -102776664 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 725 504 0 0 0 chr12 18480866 18480921 -102776609 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 90 265 276 86 84 chr12 18481038 18481456 -102776074 - RMER10A LTR ERVL 0 442 62 7 726 4125 58 0 42 chr12 18481963 18482505 -102775025 - MURVY-LTR LTR ERV1 0 519 1 7 726 271 263 56 42 chr12 18482538 18482681 -102774849 + MLT1N2 LTR MaLR 413 557 -5 7 726 191 291 73 0 chr12 18483075 18483130 -102774400 - MIRm SINE MIR -121 155 97 7 726 887 282 10 0 chr12 18483609 18483815 -102773715 - MTEa LTR MaLR -154 225 18 7 726 249 254 104 0 chr12 18483968 18484035 -102773495 + ID_B1 SINE B4 52 125 -99 7 726 298 262 35 78 chr12 18483995 18484048 -102773482 + PB1D10 SINE Alu 5 51 -66 7 726 905 144 7 0 chr12 18484048 18484194 -102773336 - B1_Mus1 SINE Alu -1 147 1 7 726 298 262 35 78 chr12 18484194 18484256 -102773274 + PB1D10 SINE Alu 52 115 -2 7 726 1827 89 31 3 chr12 18484464 18484756 -102772774 + MTB LTR MaLR 1 300 -100 7 726 1080 57 0 0 chr12 18485050 18485190 -102772340 + (TTTC)n Simple_repeat Simple_repeat 4 143 0 7 726 1233 48 12 8 chr12 18485213 18485467 -102772063 + (TCTA)n Simple_repeat Simple_repeat 1 254 0 7 726 267 270 67 0 chr12 18485474 18485497 -102772033 - ID_B1 SINE B4 -121 103 9 7 726 294 227 45 0 chr12 18485497 18485563 -102771967 - ID4_ SINE ID -6 77 9 7 726 814 209 0 13 chr12 18485584 18485734 -102771796 - B1_Mur1 SINE Alu 0 149 2 7 726 892 131 14 0 chr12 18485782 18485927 -102771603 + B1_Mus1 SINE Alu 1 147 -1 7 726 403 346 38 6 chr12 18486049 18486206 -102771324 - RSINE1 SINE B4 0 165 4 7 726 542 222 70 27 chr12 18486207 18486392 -102771138 + MTD-int LTR MaLR 1060 1252 -6 7 726 1585 192 85 3 chr12 18486405 18486770 -102770760 + MTD LTR MaLR 25 419 0 7 726 950 218 10 19 chr12 18487313 18487519 -102770011 - B3 SINE B2 -11 205 2 7 726 661 133 6 178 chr12 18487928 18487975 -102769555 + URR1A DNA MER1_type 68 112 -114 7 726 1120 68 7 7 chr12 18487975 18488122 -102769408 + B1_Mm SINE Alu 1 147 0 7 726 661 133 6 178 chr12 18488122 18488248 -102769282 + URR1A DNA MER1_type 113 211 -15 7 726 313 312 0 0 chr12 18488601 18488678 -102768852 - ID4_ SINE ID 0 83 7 7 726 294 210 49 12 chr12 18488721 18488803 -102768727 - B1F SINE Alu -51 98 14 7 726 503 257 20 46 chr12 18489012 18489163 -102768367 - B1F SINE Alu 0 149 3 7 726 1376 190 161 6 chr12 18489191 18489514 -102768016 - ORR1D1 LTR MaLR -1 373 1 7 726 1331 79 0 112 chr12 18489731 18489945 -102767585 - B2_Mm1t SINE B2 -3 190 1 7 726 195 182 68 0 chr12 18490113 18490157 -102767373 - L2c LINE L2 -77 3310 3264 7 726 1895 154 67 29 chr12 18490754 18491128 -102766402 - MTC LTR MaLR -33 388 1 7 726 258 56 0 0 chr12 18491198 18491234 -102766296 + (TGG)n Simple_repeat Simple_repeat 2 37 0 7 726 266 50 25 0 chr12 18491654 18491694 -102765836 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 7 726 753 66 0 19 chr12 18491697 18491805 -102765725 - B1_Mm SINE Alu 0 147 42 7 726 232 85 0 130 chr12 18491757 18491811 -102765719 - 4.5SRNA scRNA scRNA -8 86 40 7 726 317 159 0 0 chr12 18491839 18491902 -102765628 + CT-rich Low_complexity Low_complexity 118 180 0 7 726 418 33 0 32 chr12 18491905 18491967 -102765563 - B1_Mus1 SINE Alu -88 60 1 7 726 328 196 31 52 chr12 18491967 18492000 -102765530 - ID_B1 SINE B4 -77 145 53 7 726 509 137 74 133 chr12 18492799 18492934 -102764596 + URR1A DNA MER1_type 99 225 -1 7 726 1067 198 10 0 chr12 18492976 18493183 -102764347 - B3 SINE B2 -6 210 2 7 726 1306 281 8 32 chr12 18496473 18496506 -102761024 + ORR1D2 LTR MaLR 1 33 -337 7 726 1098 146 97 10 chr12 18496506 18496713 -102760817 - URR1B DNA MER1_type 0 225 1 7 726 1306 281 8 32 chr12 18496713 18497050 -102760480 + ORR1D2 LTR MaLR 34 362 -8 7 726 4283 25 0 0 chr12 18497113 18497595 -102759935 - LTRIS_Mm LTR ERV1 0 482 1 7 726 229 356 35 0 chr12 18497712 18497827 -102759703 - RMER15 LTR ERVL -16 559 441 7 726 1475 259 48 2 chr12 18497827 18498225 -102759305 + MTD LTR MaLR 1 416 -3 7 726 579 223 95 38 chr12 18499265 18499475 -102758055 - ID_B1 SINE B4 0 224 3 7 726 320 293 218 0 chr12 18500132 18500265 -102757265 + B3A SINE B2 8 169 -29 1 726 322 313 39 45 chr12 18500254 18500278 -102757252 + B4 SINE B4 46 67 -225 2 726 300 120 0 0 chr12 18500278 18500328 -102757202 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 726 322 313 39 45 chr12 18500328 18500354 -102757176 + B4 SINE B4 68 197 -95 2 726 557 186 10 10 chr12 18500354 18500457 -102757073 + B1_Mur2 SINE Alu 7 109 -40 4 726 470 281 18 0 chr12 18500664 18500778 -102756752 + RSINE1 SINE B4 3 118 -47 5 726 1592 42 0 20 chr12 18500779 18500975 -102756555 + B2_Mm1a SINE B2 1 192 -1 6 726 1344 89 16 0 chr12 18501003 18501194 -102756336 + B2_Mm2 SINE B2 1 194 -1 7 726 35 41 0 0 chr12 18501286 18501335 -102756195 + AT_rich Low_complexity Low_complexity 1 49 0 8 726 186 171 0 0 chr12 18501355 18501396 -102756134 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 9 726 308 276 13 13 chr12 18501886 18501963 -102755567 + ID2 SINE ID 2 78 -5 1 726 441 0 0 0 chr12 18502171 18502220 -102755310 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 726 344 285 214 50 chr12 18502358 18502676 -102754854 - ORR1E LTR MaLR 0 370 1 1 726 991 163 0 0 chr12 18502912 18503059 -102754471 - B1_Mur1 SINE Alu 0 149 3 1 726 252 280 13 39 chr12 18503146 18503224 -102754306 + RSINE1 SINE B4 50 125 -40 1 726 1297 108 16 0 chr12 18503312 18503497 -102754033 + B2_Mm2 SINE B2 1 188 -7 1 726 2179 155 19 42 chr12 18504131 18504556 -102752974 - MTC LTR MaLR -6 415 1 1 726 424 308 58 29 chr12 18505568 18505705 -102751825 - RSINE1 SINE B4 -4 161 21 1 726 381 103 0 0 chr12 18506077 18506135 -102751395 + RMER6D LTR ERVK 1 58 -662 1 726 329 200 0 0 chr12 18506387 18506447 -102751083 + B3 SINE B2 70 129 -87 1 726 597 259 0 13 chr12 18506882 18507031 -102750499 - B1_Mm SINE Alu 0 147 1 2 726 449 71 14 0 chr12 18507211 18507281 -102750249 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2 726 1350 195 100 90 chr12 18507423 18507776 -102749754 + MTD LTR MaLR 16 376 -43 2 726 738 168 33 47 chr12 18507776 18507926 -102749604 - B1_Mus1 SINE Alu 0 148 1 2 726 1350 195 100 90 chr12 18507926 18507972 -102749558 + MTD LTR MaLR 377 419 0 2 726 279 116 0 0 chr12 18508177 18508220 -102749310 + MTC LTR MaLR 92 134 -287 2 726 493 83 12 12 chr12 18508761 18508846 -102748684 + (TG)n Simple_repeat Simple_repeat 1 85 0 2 726 609 268 92 42 chr12 18508875 18509113 -102748417 - B4A SINE B4 -38 254 5 2 726 519 268 81 0 chr12 18509241 18509364 -102748166 + ETnERV2-int LTR ERVK 7070 7202 -204 2 726 249 358 44 7 chr12 18509814 18509949 -102747581 + L2b LINE L2 3022 3161 -214 2 726 517 301 9 87 chr12 18510024 18510242 -102747288 + ID_B1 SINE B4 2 202 -22 2 726 1018 126 6 0 chr12 18511041 18511200 -102746330 + B2_Mm1a SINE B2 1 160 -33 3 726 468 0 0 0 chr12 18511200 18511252 -102746278 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 3 726 380 202 39 0 chr12 18511497 18511601 -102745929 - Lx3C LINE L1 -7 6969 6862 3 726 1085 97 7 0 chr12 18512141 18512285 -102745245 + B1_Mus2 SINE Alu 3 147 0 3 726 629 86 11 0 chr12 18512294 18512387 -102745143 + (GA)n Simple_repeat Simple_repeat 2 95 0 3 726 536 65 13 0 chr12 18512373 18512450 -102745080 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 3 726 334 252 172 0 chr12 18513077 18513176 -102744354 - PB1D10 SINE Alu 0 117 2 3 726 869 316 81 113 chr12 18513543 18514250 -102743280 - MER63C DNA AcHobo -5 925 242 3 726 758 179 21 7 chr12 18514518 18514659 -102742871 + B1_Mur1 SINE Alu 1 143 -6 3 726 656 236 58 63 chr12 18514802 18514992 -102742538 + B3 SINE B2 13 201 -15 3 726 235 323 0 0 chr12 18515013 18515078 -102742452 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 726 472 211 158 79 chr12 18515094 18515172 -102742358 + B3 SINE B2 3 99 -117 4 726 801 120 37 22 chr12 18515172 18515308 -102742222 + B1_Mus1 SINE Alu 2 139 -9 4 726 288 0 0 0 chr12 18515308 18515340 -102742190 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 726 472 211 158 79 chr12 18515340 18515399 -102742131 + B3 SINE B2 100 151 -65 4 726 551 214 9 0 chr12 18516288 18516400 -102741130 - PB1D9 SINE Alu -6 114 2 4 726 1126 72 0 0 chr12 18516453 18516591 -102740939 + B1_Mus2 SINE Alu 5 142 -5 4 726 1397 209 98 26 chr12 18517011 18517181 -102740349 - MTD LTR MaLR 0 419 222 4 726 6943 55 8 5 chr12 18517181 18518033 -102739497 - RLTR13A LTR ERVK 0 855 1 4 726 1397 209 98 26 chr12 18518033 18518249 -102739281 - MTD LTR MaLR -198 221 5 4 726 370 358 36 9 chr12 18518465 18518688 -102738842 - MER46C DNA MER2_type -2 336 108 4 726 732 182 0 28 chr12 18518722 18518863 -102738667 - B1_Mm SINE Alu -6 141 5 4 726 394 222 12 0 chr12 18518988 18519069 -102738461 + ID2 SINE ID 2 83 0 5 726 612 185 0 21 chr12 18519118 18519365 -102738165 + (TG)n Simple_repeat Simple_repeat 1 241 0 5 726 1352 75 37 5 chr12 18520392 18520579 -102736951 + B2_Mm1a SINE B2 1 193 0 5 726 26 30 0 0 chr12 18521192 18521225 -102736305 + GC_rich Low_complexity Low_complexity 1 33 0 5 726 396 0 0 0 chr12 18524552 18524596 -102732934 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 726 287 269 0 0 chr12 18524680 18524758 -102732772 - B4A SINE B4 -214 78 1 5 726 249 378 15 30 chr12 18526167 18526298 -102731232 - MER3 DNA MER1_type -78 131 3 5 726 187 274 11 56 chr12 18526535 18526624 -102730906 - MER5B DNA MER1_type -62 116 32 5 726 501 262 142 6 chr12 18527044 18527213 -102730317 - B3A SINE B2 -4 194 3 5 726 207 121 14 43 chr12 18527484 18527553 -102729977 + T-rich Low_complexity Low_complexity 6 72 0 5 726 1062 91 0 7 chr12 18527560 18527704 -102729826 - B1_Mm SINE Alu -4 143 1 6 726 839 196 173 0 chr12 18527756 18527981 -102729549 + Lx9 LINE L1 7381 7644 0 6 726 677 262 68 24 chr12 18528320 18528527 -102729003 - ID_B1 SINE B4 -8 216 1 6 726 269 259 133 11 chr12 18528834 18528924 -102728606 + Lx8 LINE L1 6978 7078 -395 6 726 695 185 7 0 chr12 18529032 18529183 -102728347 + GA-rich Low_complexity Low_complexity 3 154 0 6 726 246 262 121 16 chr12 18529202 18529326 -102728204 + Lx8 LINE L1 7335 7471 -2 6 726 251 195 66 44 chr12 18529370 18529461 -102728069 + (CCCTAA)n Simple_repeat Simple_repeat 2 94 0 6 726 279 291 51 84 chr12 18529500 18529714 -102727816 + MT2A LTR ERVL 74 280 -253 6 726 4876 102 75 41 chr12 18530307 18530817 -102726713 - RMER17D LTR ERVK -2 887 368 6 726 725 0 12 0 chr12 18530817 18530902 -102726628 + (GGAGA)n Simple_repeat Simple_repeat 5 90 0 6 726 4876 102 75 41 chr12 18530902 18531249 -102726281 - RMER17D LTR ERVK -522 367 1 6 726 444 249 204 61 chr12 18531790 18532248 -102725282 - L1_Mur3 LINE L1 -4044 1836 1314 6 726 458 256 19 34 chr12 18532545 18532751 -102724779 - L1_Mur3 LINE L1 -6622 1106 904 6 726 2745 30 47 0 chr12 18534009 18534373 -102723157 + MTA_Mm LTR MaLR 16 396 0 7 726 616 26 0 0 chr12 18534373 18534447 -102723083 - RLTR9D LTR ERVK -329 74 1 7 726 252 358 36 22 chr12 18534503 18534640 -102722890 + ORR1C2 LTR MaLR 265 403 -16 7 726 362 312 97 35 chr12 18534694 18534920 -102722610 + ORR1C2-int LTR MaLR 24 263 -1107 7 726 189 0 0 0 chr12 18534920 18534941 -102722589 + (A)n Simple_repeat Simple_repeat 1 21 0 7 726 5828 234 19 9 chr12 18535045 18536449 -102721081 - Lx4B LINE L1 -4 7054 5637 7 726 1302 329 34 45 chr12 18536459 18537168 -102720362 + ORR1C2-int LTR MaLR 562 1262 -108 7 726 212 189 0 0 chr12 18537226 18537263 -102720267 + T-rich Low_complexity Low_complexity 1 37 0 7 726 306 228 42 34 chr12 18537272 18537390 -102720140 - Lx4B LINE L1 -4 7054 6936 7 726 294 335 76 52 chr12 18537506 18537717 -102719813 - B3 SINE B2 0 216 1 7 726 624 193 27 14 chr12 18537809 18537956 -102719574 + MurSatRep1 Unknown Unknown 2 150 -1987 7 726 262 339 65 0 chr12 18537958 18538082 -102719448 - B1_Mur2 SINE Alu -17 132 1 7 726 7836 195 40 38 chr12 18538082 18538943 -102718587 + MurSatRep1 Unknown Unknown 284 1134 -1003 7 726 1326 81 6 0 chr12 18538943 18539116 -102718414 - B2_Mm1a SINE B2 -18 175 2 8 726 7836 195 40 38 chr12 18539116 18540103 -102717427 + MurSatRep1 Unknown Unknown 1135 2135 -2 7 726 394 340 30 30 chr12 18540144 18540444 -102717086 + MurSatRep1 Unknown Unknown 1750 2049 -88 8 726 513 265 11 11 chr12 18540300 18540523 -102717007 + MMSAT4 Satellite Satellite 1 223 0 8 726 517 308 77 47 chr12 18540477 18541111 -102716419 + MurSatRep1 Unknown Unknown 1691 2137 0 8 726 229 293 49 49 chr12 18541060 18541182 -102716348 + MMSAT4 Satellite Satellite 35 156 -12 8 726 297 232 0 0 chr12 18541331 18541400 -102716130 + ORR1C2 LTR MaLR 302 370 -14 7 726 821 166 14 0 chr12 18541697 18541842 -102715688 + B1_Mus1 SINE Alu 2 148 0 8 726 2149 240 83 9 chr12 18542096 18543016 -102714514 - L1_Mur2 LINE L1 -3798 2082 1086 8 726 461 272 29 29 chr12 18543000 18543174 -102714356 - L1_Mur2 LINE L1 -6507 1221 1048 8 726 387 0 0 0 chr12 18543725 18543768 -102713762 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 726 24 0 0 0 chr12 18543793 18543817 -102713713 + AT_rich Low_complexity Low_complexity 1 24 0 8 726 572 228 58 16 chr12 18543817 18544005 -102713525 - Lx2B LINE L1 -162 6814 6625 8 726 353 202 0 30 chr12 18544047 18544325 -102713205 + (TA)n Simple_repeat Simple_repeat 1 269 0 9 726 182 151 0 36 chr12 18544329 18544384 -102713146 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 9 726 550 298 38 19 chr12 18544568 18544777 -102712753 + RLTR11A2 LTR ERVK 134 346 -181 9 726 1092 89 7 0 chr12 18544778 18544924 -102712606 + B1_Mm SINE Alu 1 147 0 9 726 195 42 0 0 chr12 18544924 18544948 -102712582 + (A)n Simple_repeat Simple_repeat 1 24 0 9 726 289 104 21 99 chr12 18545043 18545235 -102712295 + (TTA)n Simple_repeat Simple_repeat 2 178 0 9 726 317 182 0 0 chr12 18545461 18545516 -102712014 + HAL1-3A_ME LINE L1 1964 2018 -840 9 726 421 217 17 11 chr12 18545566 18545743 -102711787 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 726 196 200 31 0 chr12 18545759 18545824 -102711706 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 726 230 248 44 44 chr12 18545826 18545940 -102711590 - L1M1 LINE L1 -401 5899 5786 9 726 363 224 267 0 chr12 18546454 18546570 -102710960 + L1MC1 LINE L1 6187 6333 0 9 726 1732 94 179 10 chr12 18546580 18546882 -102710648 + L1_Mus3 LINE L1 6279 6631 -7 1 726 596 260 40 0 chr12 18546893 18547043 -102710487 + B3A SINE B2 2 157 -41 1 726 279 243 13 13 chr12 18548214 18548289 -102709241 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 726 4576 6 0 0 chr12 18548304 18548797 -102708733 - MT2_Mm LTR ERVL 0 493 1 1 726 321 0 0 0 chr12 18548797 18548835 -102708695 - MERVL-int LTR ERVL 0 5485 5448 1 726 362 167 46 35 chr12 18548835 18548922 -102708608 - ORR1A3-int LTR MaLR -1323 640 553 1 726 2479 31 3 0 chr12 18548922 18549210 -102708320 - MERVL-int LTR ERVL -125 5360 5072 1 726 4541 18 0 0 chr12 18549204 18549712 -102707818 - MERVL-int LTR ERVL -4977 508 1 1 726 3787 11 121 0 chr12 18549712 18550152 -102707378 - MT2_Mm LTR ERVL 0 493 1 1 726 246 227 78 26 chr12 18553602 18553679 -102703851 + PB1D10 SINE Alu 17 97 -20 1 726 777 174 7 20 chr12 18553685 18553832 -102703698 + B1_Mur4 SINE Alu 1 145 -5 1 726 885 202 28 42 chr12 18553861 18554078 -102703452 + ID_B1 SINE B4 3 216 -8 1 726 528 290 19 68 chr12 18554984 18555191 -102702339 + B4A SINE B4 24 220 -72 1 726 423 314 32 0 chr12 18555208 18555364 -102702166 + B3A SINE B2 2 162 -36 1 726 813 182 0 0 chr12 18555414 18555551 -102701979 + B1_Mur4 SINE Alu 1 137 -13 1 726 294 182 0 0 chr12 18555639 18555705 -102701825 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 726 2067 91 0 81 chr12 18555719 18556066 -102701464 + ORR1A2 LTR MaLR 1 319 -8 1 726 546 279 25 19 chr12 18556787 18556948 -102700582 - RSINE1 SINE B4 -3 162 1 1 726 249 72 35 35 chr12 18556970 18557028 -102700502 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 1 726 1049 197 27 5 chr12 18557655 18557874 -102699656 - URR1B DNA MER1_type -1 224 1 1 726 201 180 0 0 chr12 18558087 18558137 -102699393 + GA-rich Low_complexity Low_complexity 1 50 0 1 726 2199 193 24 40 chr12 18559400 18559853 -102697677 - RLTR1D LTR ERV1 -3 602 157 1 726 387 0 0 0 chr12 18560999 18561042 -102696488 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 726 326 159 14 0 chr12 18562028 18562097 -102695433 + CT-rich Low_complexity Low_complexity 2 71 0 1 726 6682 77 4 0 chr12 18562685 18563525 -102694005 + IAP-d-int LTR ERVK 5700 6542 0 1 726 2426 72 3 48 chr12 18563525 18563877 -102693653 + RLTR10D LTR ERVK 1 336 -23 1 726 567 112 0 0 chr12 18564109 18564207 -102693323 + (TC)n Simple_repeat Simple_repeat 1 98 0 1 726 624 206 44 30 chr12 18564249 18564384 -102693146 - B1_Mur3 SINE Alu -3 146 10 1 726 703 194 8 0 chr12 18564418 18564542 -102692988 - ID_B1 SINE B4 -8 216 92 1 726 1368 143 9 18 chr12 18566046 18566274 -102691256 + URR1A DNA MER1_type 1 226 0 1 726 219 312 141 28 chr12 18566949 18567091 -102690439 - MIRb SINE MIR -14 254 97 1 726 710 247 55 30 chr12 18567094 18567294 -102690236 + B4A SINE B4 2 206 -86 1 726 699 256 0 0 chr12 18567522 18567651 -102689879 + RSINE1 SINE B4 3 131 -34 1 726 234 320 0 26 chr12 18567786 18567863 -102689667 - MER2 DNA MER2_type -263 82 8 1 726 208 250 0 35 chr12 18568323 18568381 -102689149 + G-rich Low_complexity Low_complexity 3 58 0 1 726 207 303 80 27 chr12 18568479 18568591 -102688939 + MIRb SINE MIR 23 140 -128 1 726 2040 120 19 10 chr12 18568596 18568907 -102688623 - MTC LTR MaLR 0 421 108 1 726 639 191 47 54 chr12 18568910 18569059 -102688471 + B1_Mur3 SINE Alu 2 149 0 1 726 207 161 0 0 chr12 18569068 18569099 -102688431 + polypurine Low_complexity Low_complexity 4 34 0 1 726 351 0 0 0 chr12 18569100 18569139 -102688391 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 726 369 0 0 0 chr12 18569139 18569179 -102688351 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 726 571 223 18 0 chr12 18569179 18569291 -102688239 - MTC LTR MaLR -307 114 1 1 726 207 350 100 0 chr12 18569998 18570098 -102687432 + MIRb SINE MIR 114 223 -45 1 726 261 167 83 0 chr12 18570372 18570420 -102687110 + MTE2a LTR MaLR 1 52 -327 1 726 25 0 0 0 chr12 18570420 18570445 -102687085 + AT_rich Low_complexity Low_complexity 1 25 0 1 726 805 212 99 11 chr12 18570454 18570645 -102686885 - B3 SINE B2 -6 210 3 1 726 824 175 28 0 chr12 18570674 18570817 -102686713 - B1_Mus1 SINE Alu -1 147 1 1 726 1356 170 0 4 chr12 18570848 18571073 -102686457 + URR1B DNA MER1_type 1 224 -1 1 726 750 267 97 65 chr12 18571073 18571385 -102686145 + MTE2a LTR MaLR 43 364 -15 1 726 311 342 39 79 chr12 18571492 18571619 -102685911 + RSINE1 SINE B4 34 155 -10 1 726 468 0 0 0 chr12 18571619 18571671 -102685859 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 726 531 0 0 0 chr12 18571671 18571729 -102685801 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 726 25 0 0 0 chr12 18572379 18572404 -102685126 + AT_rich Low_complexity Low_complexity 1 25 0 1 726 2722 107 5 20 chr12 18573102 18573511 -102684019 - RLTR9E LTR ERVK -6 403 1 1 726 401 215 20 61 chr12 18573574 18573588 -102683942 - B3A SINE B2 -101 97 89 1 726 603 0 0 0 chr12 18573588 18573655 -102683875 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 726 546 131 0 0 chr12 18573655 18573739 -102683791 - B2_Mm2 SINE B2 -109 86 3 1 726 358 230 0 0 chr12 18573825 18573899 -102683631 + PB1D10 SINE Alu 44 117 0 1 726 465 198 12 0 chr12 18573904 18573985 -102683545 + RSINE1 SINE B4 53 134 -31 1 726 462 225 73 24 chr12 18573983 18574106 -102683424 + B1F1 SINE Alu 21 149 0 1 726 633 198 75 102 chr12 18574137 18574323 -102683207 + B3 SINE B2 15 195 0 1 726 319 328 92 54 chr12 18575277 18575538 -102681992 + L1MD2 LINE L1 6084 6354 -5 1 726 815 287 51 36 chr12 18575556 18575831 -102681699 + B4A SINE B4 6 284 -8 1 726 927 119 0 7 chr12 18576123 18576267 -102681263 - URR1B DNA MER1_type 0 225 83 1 726 308 256 3 32 chr12 18577360 18577460 -102680070 - MT2A LTR ERVL -496 105 9 1 726 816 270 12 29 chr12 18577955 18578250 -102679280 - MTE2a LTR MaLR 0 379 35 1 726 897 157 151 5 chr12 18578250 18578442 -102679088 + URR1A DNA MER1_type 1 220 -6 1 726 2311 42 0 0 chr12 18578483 18578767 -102678763 + LTRIS_Mm LTR ERV1 199 482 0 1 726 785 90 0 63 chr12 18579583 18579855 -102677675 + G-rich Low_complexity Low_complexity 1 254 0 1 726 2600 50 0 3 chr12 18580034 18580352 -102677178 + L1Md_F3 LINE L1 6254 6570 -14 1 726 674 205 31 0 chr12 18580523 18580650 -102676880 + B1_Mus1 SINE Alu 3 133 -15 1 726 267 31 0 0 chr12 18580652 18580684 -102676846 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 726 302 254 143 99 chr12 18580749 18580944 -102676586 + MLT1F1 LTR MaLR 141 334 -226 1 726 824 214 88 0 chr12 18581167 18581359 -102676171 + B3 SINE B2 3 211 -5 1 726 428 214 157 33 chr12 18581385 18581506 -102676024 + B1_Mur2 SINE Alu 1 136 -13 1 726 372 22 0 0 chr12 18581516 18581561 -102675969 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 1 726 201 147 0 0 chr12 18581561 18581595 -102675935 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1 726 405 90 0 0 chr12 18581749 18581816 -102675714 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 1 726 297 0 0 0 chr12 18581818 18581851 -102675679 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 726 760 265 13 44 chr12 18582990 18583219 -102674311 + ID_B1 SINE B4 3 224 0 1 726 927 86 78 0 chr12 18583255 18583383 -102674147 + B1_Mus1 SINE Alu 1 138 -10 1 726 621 40 0 0 chr12 18583446 18583522 -102674008 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 726 583 335 37 0 chr12 18583564 18583779 -102673751 - L1MD LINE L1 -540 5819 5597 1 726 398 264 189 0 chr12 18583836 18583942 -102673588 - RSINE1 SINE B4 -36 129 4 1 726 4466 131 47 19 chr12 18583949 18584278 -102673252 + RMER17D2 LTR ERVK 1 339 -470 1 726 230 0 0 32 chr12 18584278 18584309 -102673221 + (TCTCC)n Simple_repeat Simple_repeat 2 31 0 1 726 4466 131 47 19 chr12 18584309 18584766 -102672764 + RMER17D2 LTR ERVK 340 808 -1 1 726 1408 200 165 137 chr12 18584847 18585316 -102672214 - MT2A LTR ERVL -71 462 1 1 726 411 266 89 0 chr12 18585317 18585441 -102672089 - L1MD LINE L1 -676 5566 5432 1 726 729 223 19 0 chr12 18585468 18585625 -102671905 + B3A SINE B2 1 160 -38 1 726 297 0 0 0 chr12 18585654 18585687 -102671843 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 726 647 222 82 71 chr12 18585758 18585942 -102671588 - B3 SINE B2 -23 193 8 1 726 202 200 36 36 chr12 18585956 18586039 -102671491 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 1 726 789 158 0 67 chr12 18586041 18586190 -102671340 - B1_Mus1 SINE Alu 0 148 10 1 726 934 228 37 27 chr12 18586560 18586782 -102670748 - MTD LTR MaLR -18 401 194 1 726 879 229 50 64 chr12 18586777 18586814 -102670716 - B3 SINE B2 0 216 188 1 726 360 0 0 0 chr12 18586814 18586854 -102670676 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1 726 879 229 50 64 chr12 18586854 18587035 -102670495 - B3 SINE B2 -29 187 1 1 726 863 182 41 25 chr12 18587035 18587230 -102670300 - MTD LTR MaLR -208 213 1 1 726 547 243 141 14 chr12 18587852 18587994 -102669536 + RSINE1 SINE B4 2 161 -4 1 726 21 0 0 0 chr12 18587999 18588020 -102669510 + AT_rich Low_complexity Low_complexity 1 21 0 1 726 575 264 85 142 chr12 18588139 18588540 -102668990 - RMER10A LTR ERVL 0 442 65 1 726 377 269 86 61 chr12 18588997 18589195 -102668335 + MLT1N2 LTR MaLR 355 557 -5 1 726 206 83 0 53 chr12 18589215 18589253 -102668277 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 726 204 304 54 0 chr12 18589604 18589660 -102667870 - MIRm SINE MIR -121 155 97 1 726 181 125 200 0 chr12 18589886 18589926 -102667604 - L3 LINE CR1 -3526 963 916 1 726 981 286 13 0 chr12 18590138 18590362 -102667168 - MTEa LTR MaLR -152 227 1 1 726 402 245 214 14 chr12 18590497 18590579 -102666951 + ID_B1 SINE B4 51 149 -75 1 726 994 130 7 0 chr12 18590579 18590725 -102666805 - B1_Mus1 SINE Alu -1 147 1 1 726 402 245 214 14 chr12 18590725 18590787 -102666743 + ID_B1 SINE B4 150 224 0 1 726 21 0 0 0 chr12 18590879 18590900 -102666630 + AT_rich Low_complexity Low_complexity 1 21 0 1 726 2489 106 26 5 chr12 18590991 18591372 -102666158 + MTB LTR MaLR 1 389 -11 1 726 616 255 133 14 chr12 18591515 18591726 -102665804 + B4A SINE B4 3 238 -54 1 726 399 152 0 0 chr12 18592218 18592297 -102665233 + CT-rich Low_complexity Low_complexity 3 81 0 2 726 855 120 0 0 chr12 18592297 18592455 -102665075 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 2 726 224 348 54 0 chr12 18592465 18592483 -102665047 - ID_B1 SINE B4 -127 97 1 2 726 248 311 40 0 chr12 18592483 18592557 -102664973 - ID4_ SINE ID -6 77 1 2 726 881 196 0 13 chr12 18592570 18592720 -102664810 - B1_Mur1 SINE Alu 0 149 2 2 726 852 171 7 0 chr12 18592768 18592914 -102664616 + B1_Mus1 SINE Alu 1 147 -1 2 726 589 269 45 6 chr12 18593038 18593195 -102664335 - RSINE1 SINE B4 0 165 3 2 726 504 232 76 19 chr12 18593340 18593498 -102664032 - MTD-int LTR MaLR -1091 167 1 2 726 1113 211 245 9 chr12 18593504 18593843 -102663687 - MTD LTR MaLR 0 419 1 2 726 4241 227 50 62 chr12 18593907 18595076 -102662454 + MTD-int LTR MaLR 98 1252 -6 2 726 1756 192 82 0 chr12 18595089 18595454 -102662076 + MTD LTR MaLR 25 419 0 2 726 843 244 14 29 chr12 18595992 18596199 -102661331 - B3 SINE B2 -11 205 2 2 726 240 143 48 0 chr12 18596378 18596420 -102661110 - ORR1D1 LTR MaLR 0 374 331 2 726 306 273 120 83 chr12 18596421 18596613 -102660917 + L1MEd LINE L1 921 1119 -5000 2 726 325 130 0 100 chr12 18596724 18596784 -102660746 + URR1A DNA MER1_type 59 112 -114 2 726 1108 72 0 0 chr12 18596786 18596924 -102660606 + B1_Mm SINE Alu 1 138 -9 2 726 423 0 0 0 chr12 18596924 18596971 -102660559 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 2 726 318 283 36 90 chr12 18597310 18597321 -102660209 - CYRA11_Mm Unknown Y-chromosome -295 322 243 2 726 574 167 68 108 chr12 18597321 18597469 -102660061 + URR1A DNA MER1_type 83 224 -2 2 726 1042 212 14 0 chr12 18597508 18597720 -102659810 - B3 SINE B2 0 216 2 2 726 193 179 26 0 chr12 18597883 18597922 -102659608 - MIRc SINE MIR -144 124 85 2 726 5493 132 27 52 chr12 18599686 18600689 -102656841 + RLTR13A3 LTR ERVK 1 978 0 2 726 1336 300 8 32 chr12 18602084 18602117 -102655413 + ORR1D2 LTR MaLR 1 33 -337 2 726 1169 158 81 9 chr12 18602117 18602328 -102655202 - URR1A DNA MER1_type 0 226 1 2 726 1336 300 8 32 chr12 18602328 18602669 -102654861 + ORR1D2 LTR MaLR 34 366 -4 2 726 293 328 35 0 chr12 18602842 18602958 -102654572 - RMER15 LTR ERVL -16 559 440 2 726 1668 244 56 2 chr12 18602958 18603352 -102654178 + MTD LTR MaLR 2 416 -3 2 726 560 251 90 38 chr12 18604388 18604599 -102652931 - ID_B1 SINE B4 0 224 3 2 726 456 221 115 130 chr12 18605260 18605468 -102652062 + B3 SINE B2 8 212 -4 2 726 609 186 10 10 chr12 18605476 18605579 -102651951 + B1_Mur2 SINE Alu 7 109 -40 2 726 507 282 17 0 chr12 18605786 18605903 -102651627 + RSINE1 SINE B4 3 121 -44 2 726 1253 100 21 0 chr12 18605904 18606094 -102651436 + B2_Mm2 SINE B2 1 194 -1 2 726 21 71 0 0 chr12 18606186 18606228 -102651302 + AT_rich Low_complexity Low_complexity 1 42 0 2 726 186 143 0 0 chr12 18606253 18606288 -102651242 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2 726 323 237 13 13 chr12 18606783 18606860 -102650670 + ID2 SINE ID 2 78 -5 2 726 369 0 0 0 chr12 18607061 18607102 -102650428 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 726 206 360 44 11 chr12 18607142 18607232 -102650298 - L2c LINE L2 -39 3348 3256 2 726 365 286 217 53 chr12 18607240 18607558 -102649972 - ORR1D2 LTR MaLR 0 370 1 2 726 904 162 0 0 chr12 18607790 18607926 -102649604 - B1_Mur1 SINE Alu 0 149 14 2 726 358 227 13 39 chr12 18608003 18608081 -102649449 + RSINE1 SINE B4 50 125 -40 2 726 1344 110 16 0 chr12 18608171 18608362 -102649168 + B2_Mm2 SINE B2 1 194 -1 2 726 200 329 92 49 chr12 18608424 18608587 -102648943 - L2c LINE L2 -459 2960 2791 2 726 1425 229 96 49 chr12 18608861 18609165 -102648365 + MTD LTR MaLR 16 352 -67 2 726 1271 42 12 0 chr12 18609165 18609330 -102648200 + (TTTCC)n Simple_repeat Simple_repeat 1 167 0 2 726 1425 229 96 49 chr12 18609330 18609364 -102648166 + MTD LTR MaLR 353 373 -46 2 726 621 203 33 53 chr12 18609364 18609515 -102648015 - B1_Mus1 SINE Alu 0 148 1 2 726 1425 229 96 49 chr12 18609515 18609561 -102647969 + MTD LTR MaLR 374 419 0 2 726 225 281 0 0 chr12 18609682 18609746 -102647784 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 726 312 142 4 0 chr12 18609769 18609823 -102647707 + MTC LTR MaLR 80 134 -285 2 726 310 100 16 16 chr12 18610368 18610429 -102647101 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 726 647 276 92 42 chr12 18610458 18610696 -102646834 - B4A SINE B4 -38 254 5 2 726 1291 89 6 11 chr12 18611195 18611377 -102646153 + B2_Mm1a SINE B2 2 182 -11 2 726 502 189 32 8 chr12 18611595 18611718 -102645812 - Lx3B LINE L1 0 6973 6848 2 727 409 263 85 28 chr12 18612859 18613000 -102644530 - B1F SINE Alu 0 149 1 2 727 544 278 69 11 chr12 18613357 18613546 -102643984 - MER63D DNA AcHobo -5 1056 857 2 727 1457 218 100 11 chr12 18613560 18613941 -102643589 - MTD LTR MaLR 0 419 5 2 727 512 342 37 17 chr12 18614169 18614410 -102643120 - MER46C DNA MER2_type -1 337 92 2 727 827 190 0 14 chr12 18614428 18614572 -102642958 - B1_Mur3 SINE Alu -6 143 2 2 727 371 235 12 0 chr12 18614691 18614772 -102642758 + ID2 SINE ID 2 83 0 2 727 450 176 0 0 chr12 18614821 18614940 -102642590 + (TG)n Simple_repeat Simple_repeat 2 120 0 2 727 21 0 0 0 chr12 18616839 18616860 -102640670 + GC_rich Low_complexity Low_complexity 1 21 0 2 727 191 253 149 3 chr12 18619773 18619847 -102637683 - MIRm SINE MIR -115 161 74 2 727 273 75 0 0 chr12 18620239 18620279 -102637251 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 727 290 268 0 40 chr12 18620335 18620436 -102637094 - B4A SINE B4 -195 97 1 2 727 298 363 16 31 chr12 18621849 18621977 -102635553 - MER3 DNA MER1_type -81 128 3 2 727 264 357 31 0 chr12 18622042 18622140 -102635390 + MER5A1 DNA MER1_type 66 166 0 2 727 218 241 22 67 chr12 18622214 18622303 -102635227 - MER5B DNA MER1_type -62 116 32 2 727 489 251 137 30 chr12 18622719 18622887 -102634643 - B3A SINE B2 -10 188 3 2 727 243 0 0 0 chr12 18623165 18623192 -102634338 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 727 994 94 29 7 chr12 18623221 18623361 -102634169 - B1_Mm SINE Alu -4 143 1 2 727 879 187 173 0 chr12 18623413 18623638 -102633892 + Lx9 LINE L1 7381 7644 0 2 727 301 262 148 67 chr12 18623970 18624105 -102633425 - B1F2 SINE Alu 0 149 4 2 727 837 253 26 26 chr12 18624105 18624188 -102633342 - ID SINE ID -141 83 1 2 727 356 155 14 0 chr12 18624698 18624769 -102632761 + GA-rich Low_complexity Low_complexity 3 74 0 2 727 279 268 114 0 chr12 18624790 18624913 -102632617 + Lx8 LINE L1 7335 7471 -2 2 727 231 83 0 104 chr12 18624985 18625052 -102632478 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 2 727 2275 52 0 0 chr12 18675127 18675399 -102582131 + L1Md_F3 LINE L1 5315 5586 -297 2 727 8278 43 2 2 chr12 18675399 18676397 -102581133 + L1Md_F3 LINE L1 5587 6584 0 2 727 312 220 110 90 chr12 18678554 18678635 -102578895 + PB1D10 SINE Alu 12 98 -19 2 727 975 160 0 0 chr12 18678635 18678785 -102578745 + B1_Mur4 SINE Alu 1 150 0 2 727 312 220 110 90 chr12 18678785 18678803 -102578727 + PB1D10 SINE Alu 99 113 -4 2 727 885 256 23 29 chr12 18678831 18679058 -102578472 + ID_B1 SINE B4 3 227 -65 2 727 581 279 23 70 chr12 18679956 18680174 -102577356 + B4A SINE B4 24 239 -53 2 727 511 302 65 16 chr12 18680174 18680359 -102577171 + B3A SINE B2 2 195 -3 2 727 973 131 0 0 chr12 18680380 18680517 -102577013 + B1_Mur4 SINE Alu 1 137 -13 2 727 2318 96 0 58 chr12 18680648 18680991 -102576539 + ORR1A2 LTR MaLR 1 323 -4 2 727 305 351 45 8 chr12 18681002 18681134 -102576396 + HAL1-3A_ME LINE L1 1980 2116 -742 2 727 284 127 18 0 chr12 18681134 18681189 -102576341 + (GGGAA)n Simple_repeat Simple_repeat 5 60 0 2 727 530 261 43 25 chr12 18681880 18682041 -102575489 - RSINE1 SINE B4 -1 164 1 2 727 335 295 53 8 chr12 18682511 18682644 -102574886 - MER33 DNA MER1_type 0 324 186 2 727 919 185 32 5 chr12 18682688 18682873 -102574657 - URR1B DNA MER1_type -3 222 33 2 727 198 0 0 0 chr12 18682894 18682916 -102574614 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 727 847 87 40 11 chr12 18683421 18683596 -102573934 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 727 432 252 0 9 chr12 18684339 18684451 -102573079 - PB1D9 SINE Alu 0 120 10 2 727 585 233 45 26 chr12 18684639 18684793 -102572737 + B3 SINE B2 58 214 -2 2 727 947 65 8 0 chr12 18684866 18684990 -102572540 + B1_Mm SINE Alu 22 146 -1 2 727 189 0 0 0 chr12 18684991 18685012 -102572518 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 2 727 597 197 68 8 chr12 18685068 18685201 -102572329 + ID_B1 SINE B4 82 222 -2 2 727 248 49 49 0 chr12 18685413 18685454 -102572076 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 2 727 192 143 0 0 chr12 18685454 18685496 -102572034 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 727 562 211 47 31 chr12 18685506 18685633 -102571897 - B1_Mur3 SINE Alu -12 137 9 2 727 678 184 8 31 chr12 18685665 18685794 -102571736 - ID_B1 SINE B4 -7 217 92 2 727 345 75 0 0 chr12 18687755 18687808 -102569722 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 2 727 728 232 55 30 chr12 18687853 18688053 -102569477 + B4A SINE B4 2 206 -86 2 727 745 233 0 0 chr12 18688281 18688410 -102569120 + RSINE1 SINE B4 3 131 -34 2 727 231 218 154 44 chr12 18688464 18688555 -102568975 - MER2 DNA MER2_type -149 196 96 2 727 234 303 81 18 chr12 18689234 18689345 -102568185 + MIRb SINE MIR 23 140 -128 2 727 2020 129 10 10 chr12 18689350 18689664 -102567866 - MTC LTR MaLR 0 421 108 2 727 607 176 84 49 chr12 18689667 18689810 -102567720 + B1_Mur3 SINE Alu 2 149 0 2 727 218 164 18 0 chr12 18689825 18689880 -102567650 + GA-rich Low_complexity Low_complexity 1 56 0 3 727 1050 61 0 0 chr12 18691172 18691319 -102566211 + (TC)n Simple_repeat Simple_repeat 2 148 0 3 727 669 60 0 0 chr12 18691319 18691403 -102566127 - B2_Mm2 SINE B2 -109 86 3 3 727 351 284 0 0 chr12 18691476 18691564 -102565966 + PB1D10 SINE Alu 30 117 0 3 727 433 212 12 0 chr12 18691569 18691649 -102565881 + RSINE1 SINE B4 53 133 -32 3 727 451 213 66 66 chr12 18691634 18691770 -102565760 + B1F1 SINE Alu 13 148 -1 3 727 595 242 16 42 chr12 18691802 18691993 -102565537 + B3 SINE B2 15 195 0 3 727 768 224 30 18 chr12 18692558 18692722 -102564808 - B3A SINE B2 -30 168 3 3 727 274 319 108 6 chr12 18692750 18692917 -102564613 + L2c LINE L2 2981 3164 -223 3 727 302 312 28 0 chr12 18693114 18693223 -102564307 + PB1D7 SINE Alu 3 114 -6 3 727 287 333 8 41 chr12 18693230 18693352 -102564178 - MIRb SINE MIR -149 119 2 3 727 392 0 0 20 chr12 18694404 18694453 -102563077 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 727 685 288 43 32 chr12 18694630 18694910 -102562620 + B4A SINE B4 2 284 -8 3 727 301 116 0 0 chr12 18695202 18695245 -102562285 - URR1B DNA MER1_type 0 225 183 3 727 3501 45 28 12 chr12 18695517 18695946 -102561584 - RLTR10C LTR ERVK 0 436 1 3 727 409 141 0 23 chr12 18696248 18696335 -102561195 + G-rich Low_complexity Low_complexity 2 86 0 3 727 772 186 36 0 chr12 18696676 18696816 -102560714 + B1_Mus1 SINE Alu 3 147 -1 3 727 620 88 8 26 chr12 18696816 18696933 -102560597 + (TAAA)n Simple_repeat Simple_repeat 1 115 0 3 727 780 229 88 5 chr12 18697405 18697598 -102559932 + B3 SINE B2 3 211 -5 3 727 462 188 157 33 chr12 18697622 18697743 -102559787 + B1_Mur2 SINE Alu 1 136 -13 3 727 324 143 0 0 chr12 18697748 18697804 -102559726 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 727 1445 23 11 0 chr12 18697804 18697980 -102559550 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 3 727 228 303 75 43 chr12 18699024 18699117 -102558413 - RMER21A LTR ERV1 -593 354 259 3 727 744 273 13 43 chr12 18700087 18700317 -102557213 + ID_B1 SINE B4 2 224 0 3 727 1034 101 0 0 chr12 18700353 18700491 -102557039 + B1_Mus1 SINE Alu 1 138 -10 3 727 483 73 0 0 chr12 18700569 18700637 -102556893 + (TC)n Simple_repeat Simple_repeat 2 69 0 3 727 440 366 47 9 chr12 18700681 18700896 -102556634 - L1MD LINE L1 -540 5819 5597 3 727 240 260 238 62 chr12 18700899 18700953 -102556577 - B2_Mm1a SINE B2 -3 190 3 3 727 421 255 189 0 chr12 18700953 18701059 -102556471 - RSINE1 SINE B4 -36 129 4 3 727 4378 130 12 78 chr12 18701066 18701928 -102555602 + RMER17D2 LTR ERVK 1 805 -4 3 727 239 276 2 149 chr12 18702001 18702112 -102555418 - RMER21A LTR ERV1 -287 660 471 3 727 1425 168 182 142 chr12 18702033 18702477 -102555053 - MT2A LTR ERVL -71 462 1 3 727 546 266 14 0 chr12 18702478 18702621 -102554909 - L1MD LINE L1 -676 5566 5422 3 727 750 181 8 0 chr12 18702638 18702771 -102554759 + B3A SINE B2 1 134 -64 3 727 459 0 0 0 chr12 18702806 18702857 -102554673 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 727 648 231 67 62 chr12 18702925 18703119 -102554411 - B3 SINE B2 -20 196 2 3 727 1090 110 0 0 chr12 18703157 18703303 -102554227 - B1_Mus1 SINE Alu -1 147 2 3 727 1342 68 5 50 chr12 18703348 18703550 -102553980 - B2_Mm2 SINE B2 0 195 3 3 727 320 266 17 76 chr12 18703585 18703703 -102553827 - RLTR25B LTR ERVK -473 555 445 3 727 788 156 13 78 chr12 18703600 18703753 -102553777 - B1_Mus1 SINE Alu 0 148 6 3 727 4184 52 4 0 chr12 18703802 18704303 -102553227 + RLTR1C LTR ERV1 1 503 0 3 727 198 91 0 0 chr12 18704342 18704375 -102553155 + (T)n Simple_repeat Simple_repeat 1 33 0 3 727 823 262 39 19 chr12 18704723 18704929 -102552601 - MTD LTR MaLR -14 405 196 3 727 769 245 96 15 chr12 18704969 18705168 -102552362 - B3 SINE B2 -1 215 1 3 727 851 203 24 34 chr12 18705168 18705364 -102552166 - MTD LTR MaLR -204 196 1 3 727 585 228 115 20 chr12 18705987 18706135 -102551395 + RSINE1 SINE B4 2 163 -2 3 727 612 0 0 0 chr12 18706139 18706207 -102551323 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 727 475 284 74 145 chr12 18706324 18706731 -102550799 - RMER10A LTR ERVL 0 442 65 3 727 3419 78 18 0 chr12 18707233 18707680 -102549850 - MURVY-LTR LTR ERV1 -64 455 1 3 727 324 277 56 35 chr12 18707713 18707855 -102549675 + MLT1N2 LTR MaLR 413 557 -5 3 727 218 301 95 26 chr12 18708044 18708160 -102549370 + MER5A DNA MER1_type 62 185 -4 3 727 201 231 93 37 chr12 18708251 18708305 -102549225 - MIR SINE MIR -61 147 91 3 727 202 149 170 0 chr12 18708533 18708580 -102548950 - L3 LINE CR1 -3520 969 915 3 727 920 291 10 0 chr12 18708794 18709000 -102548530 - MTEa LTR MaLR -154 225 18 3 727 281 254 104 0 chr12 18709153 18709220 -102548310 + ID_B1 SINE B4 52 125 -99 3 727 296 269 34 85 chr12 18709180 18709230 -102548300 + PB1D10 SINE Alu 5 51 -66 3 727 955 144 0 20 chr12 18709230 18709379 -102548151 - B1_Mus1 SINE Alu -2 146 1 3 727 296 269 34 85 chr12 18709379 18709446 -102548084 + PB1D10 SINE Alu 52 116 -1 3 727 387 309 50 141 chr12 18709523 18709649 -102547881 - MLT1B LTR MaLR -12 378 254 3 727 2620 105 25 5 chr12 18709649 18710041 -102547489 + MTB LTR MaLR 1 400 0 3 727 387 309 50 141 chr12 18710041 18710155 -102547375 - MLT1B LTR MaLR -137 253 160 3 727 624 259 90 27 chr12 18710168 18710390 -102547140 + B4A SINE B4 3 238 -54 3 727 269 297 40 0 chr12 18710868 18710942 -102546588 - ID2 SINE ID -6 77 1 3 727 656 227 0 16 chr12 18710955 18711076 -102546454 - PB1D9 SINE Alu 0 120 2 3 727 871 158 7 0 chr12 18711134 18711280 -102546250 + B1_Mus1 SINE Alu 1 147 -1 3 727 561 291 47 7 chr12 18711408 18711557 -102545973 - RSINE1 SINE B4 0 165 11 3 727 498 232 76 19 chr12 18711701 18711859 -102545671 - MTD-int LTR MaLR -1091 167 1 3 727 1128 214 241 9 chr12 18711865 18712205 -102545325 - MTD LTR MaLR 0 419 1 3 727 4221 228 50 62 chr12 18712269 18713438 -102544092 + MTD-int LTR MaLR 98 1252 -6 3 727 1777 189 82 0 chr12 18713451 18713816 -102543714 + MTD LTR MaLR 25 419 0 3 727 843 244 14 29 chr12 18714354 18714561 -102542969 - B3 SINE B2 -11 205 2 3 727 240 143 48 0 chr12 18714740 18714782 -102542748 - ORR1D1 LTR MaLR 0 374 331 3 727 306 273 120 83 chr12 18714783 18714975 -102542555 + L1MEd LINE L1 921 1119 -5000 3 727 325 130 0 100 chr12 18715086 18715146 -102542384 + URR1A DNA MER1_type 59 112 -114 3 727 1108 72 0 0 chr12 18715148 18715286 -102542244 + B1_Mm SINE Alu 1 138 -9 3 727 423 0 0 0 chr12 18715286 18715333 -102542197 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 3 727 318 283 36 90 chr12 18715672 18715683 -102541847 - CYRA11_Mm Unknown Y-chromosome -295 322 243 3 727 574 167 68 108 chr12 18715683 18715831 -102541699 + URR1A DNA MER1_type 83 224 -2 3 727 1042 212 14 0 chr12 18715870 18716082 -102541448 - B3 SINE B2 0 216 2 3 727 193 179 26 0 chr12 18716245 18716284 -102541246 - MIRc SINE MIR -144 124 85 3 727 5505 132 27 52 chr12 18718047 18719050 -102538480 + RLTR13A3 LTR ERVK 1 978 0 3 727 1327 300 8 32 chr12 18720445 18720478 -102537052 + ORR1D2 LTR MaLR 1 33 -337 3 727 1186 153 81 9 chr12 18720478 18720689 -102536841 - URR1A DNA MER1_type 0 226 1 3 727 1327 300 8 32 chr12 18720689 18721030 -102536500 + ORR1D2 LTR MaLR 34 366 -4 3 727 293 328 35 0 chr12 18721203 18721319 -102536211 - RMER15 LTR ERVL -16 559 440 3 727 1631 247 56 5 chr12 18721319 18721714 -102535816 + MTD LTR MaLR 2 416 -3 3 727 554 251 90 38 chr12 18722755 18722966 -102534564 - ID_B1 SINE B4 0 224 3 3 727 387 226 115 130 chr12 18723629 18723837 -102533693 + B3 SINE B2 8 212 -4 3 727 571 186 10 10 chr12 18723845 18723948 -102533582 + B1_Mur2 SINE Alu 7 109 -40 3 727 476 282 17 0 chr12 18724155 18724272 -102533258 + RSINE1 SINE B4 3 121 -44 3 727 1323 94 16 0 chr12 18724273 18724465 -102533065 + B2_Mm2 SINE B2 1 195 0 3 727 21 71 0 0 chr12 18724557 18724599 -102532931 + AT_rich Low_complexity Low_complexity 1 42 0 3 727 186 143 0 0 chr12 18724624 18724659 -102532871 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 3 727 318 237 13 13 chr12 18725154 18725231 -102532299 + ID2 SINE ID 2 78 -5 3 727 423 0 0 0 chr12 18725430 18725477 -102532053 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 727 251 259 174 54 chr12 18725615 18725933 -102531597 - MTEa LTR MaLR 0 379 1 3 727 847 162 0 0 chr12 18726163 18726299 -102531231 - B1_Mur1 SINE Alu 0 149 14 3 727 322 240 13 39 chr12 18726376 18726454 -102531076 + RSINE1 SINE B4 50 125 -40 3 727 1361 105 16 0 chr12 18726544 18726735 -102530795 + B2_Mm2 SINE B2 1 194 -1 3 727 1298 223 96 49 chr12 18727234 18727538 -102529992 + MTD LTR MaLR 16 352 -67 3 727 1046 50 14 0 chr12 18727538 18727678 -102529852 + (TTTCC)n Simple_repeat Simple_repeat 1 142 0 3 727 1298 223 96 49 chr12 18727678 18727712 -102529818 + MTD LTR MaLR 353 374 -45 3 727 655 196 33 53 chr12 18727712 18727863 -102529667 - B1_Mus1 SINE Alu 0 148 1 3 727 1298 223 96 49 chr12 18727863 18727909 -102529621 + MTD LTR MaLR 375 419 0 3 727 225 281 0 0 chr12 18728030 18728126 -102529404 + (TA)n Simple_repeat Simple_repeat 1 96 0 3 727 291 116 0 0 chr12 18728128 18728171 -102529359 + MTC LTR MaLR 92 134 -287 3 727 508 73 12 12 chr12 18728716 18728799 -102528731 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 727 587 255 117 0 chr12 18728878 18729066 -102528464 - B4A SINE B4 -78 214 5 3 727 1241 100 6 11 chr12 18729565 18729747 -102527783 + B2_Mm1a SINE B2 2 182 -11 3 727 526 180 32 8 chr12 18729982 18730105 -102527425 - Lx3B LINE L1 0 6973 6848 3 727 1095 83 7 0 chr12 18730630 18730774 -102526756 + B1_Mm SINE Alu 3 147 0 4 727 998 150 0 11 chr12 18730776 18730958 -102526572 + GA-rich Low_complexity Low_complexity 1 180 0 4 727 351 0 0 0 chr12 18730959 18730998 -102526532 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 727 447 234 85 28 chr12 18731632 18731773 -102525757 - B1F SINE Alu 0 149 1 4 727 541 299 49 9 chr12 18732140 18732366 -102525164 - MER63C DNA AcHobo -5 925 691 4 727 232 229 0 62 chr12 18732405 18732470 -102525060 + MER63D DNA AcHobo 537 597 -464 4 727 330 323 121 0 chr12 18732437 18732635 -102524895 - MER63C DNA AcHobo -237 693 472 4 727 463 103 58 0 chr12 18732682 18732769 -102524761 - RMER17D LTR ERVK -797 92 1 4 727 550 253 202 53 chr12 18733334 18733789 -102523741 - L1_Mur3 LINE L1 -4044 1836 1314 4 727 476 246 23 6 chr12 18734116 18734292 -102523238 - L1_Mur3 LINE L1 -6646 1082 904 4 727 302 370 52 16 chr12 18736396 18736588 -102520942 + MTD LTR MaLR 15 213 -206 4 727 1816 164 73 21 chr12 18736588 18736894 -102520636 - RLTR9D LTR ERVK -2 401 75 4 727 3312 31 10 5 chr12 18736894 18737288 -102520242 + MTA_Mm LTR MaLR 1 396 0 4 727 1816 164 73 21 chr12 18737288 18737362 -102520168 - RLTR9D LTR ERVK -329 74 1 4 727 269 339 120 16 chr12 18737364 18737556 -102519974 + MTD LTR MaLR 192 403 -16 4 727 306 106 0 0 chr12 18737568 18737615 -102519915 + (CAA)n Simple_repeat Simple_repeat 2 48 0 4 727 421 358 34 13 chr12 18737634 18737869 -102519661 + MTD-int LTR MaLR 24 263 -1107 4 727 871 129 0 39 chr12 18738011 18738164 -102519366 - B1_Mus2 SINE Alu 0 147 1 4 727 5873 238 16 8 chr12 18738171 18739578 -102517952 - Lx4B LINE L1 -4 7054 5637 4 727 1196 312 39 58 chr12 18739619 18740306 -102517224 + MTD-int LTR MaLR 589 1262 -108 4 727 295 241 25 41 chr12 18740411 18740532 -102516998 - Lx4B LINE L1 -4 7054 6936 4 727 8133 191 100 30 chr12 18740950 18741099 -102516431 + MurSatRep1 Unknown Unknown 2 175 -1962 4 727 344 314 65 0 chr12 18741099 18741223 -102516307 - B1_Mur2 SINE Alu -17 132 1 4 727 8133 191 100 30 chr12 18741223 18742067 -102515463 + MurSatRep1 Unknown Unknown 176 1125 -1012 4 727 1324 104 6 0 chr12 18742067 18742250 -102515280 - B2_Mm1a SINE B2 -8 185 2 4 727 8133 191 100 30 chr12 18742250 18743249 -102514281 + MurSatRep1 Unknown Unknown 1126 2134 -3 4 90 310 316 36 41 chr12 18743290 18743511 -102514019 + MurSatRep1 Unknown Unknown 1834 2053 -84 4 728 471 257 22 22 chr12 18743446 18743585 -102513945 + MMSAT4 Satellite Satellite 30 168 0 4 728 477 301 29 25 chr12 18743554 18743758 -102513772 + MurSatRep1 Unknown Unknown 1845 2049 -88 4 728 410 309 0 0 chr12 18743698 18743837 -102513693 + MMSAT4 Satellite Satellite 30 168 0 4 728 521 322 26 26 chr12 18743791 18744262 -102513268 + MurSatRep1 Unknown Unknown 1747 2049 -88 4 728 298 275 58 58 chr12 18744202 18744341 -102513189 + MMSAT4 Satellite Satellite 30 168 0 4 728 471 327 30 30 chr12 18744295 18744766 -102512764 + MurSatRep1 Unknown Unknown 1747 2049 -88 4 728 231 297 10 10 chr12 18744706 18744808 -102512722 + MMSAT4 Satellite Satellite 30 131 -37 4 728 2916 87 5 5 chr12 18744812 18745215 -102512315 + L1_Mus1 LINE L1 6164 6566 -1 4 728 424 322 77 50 chr12 18745231 18745385 -102512145 + MurSatRep1 Unknown Unknown 1751 1998 -139 4 728 328 281 29 22 chr12 18745385 18745523 -102512007 + MMSAT4 Satellite Satellite 30 168 0 4 728 424 322 77 50 chr12 18745523 18745607 -102511923 + MurSatRep1 Unknown Unknown 1999 2136 -1 4 728 263 277 26 26 chr12 18745552 18745667 -102511863 + MMSAT4 Satellite Satellite 31 145 -23 4 728 309 267 0 11 chr12 18745817 18745908 -102511622 + ORR1C2 LTR MaLR 293 382 -2 4 728 887 153 14 0 chr12 18746192 18746336 -102511194 + B1_Mus1 SINE Alu 2 147 -1 4 728 2338 238 78 7 chr12 18746552 18747555 -102509975 - L1_Mur2 LINE L1 -3798 2082 1062 4 728 342 0 0 0 chr12 18748170 18748208 -102509322 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 728 234 0 0 0 chr12 18748209 18748235 -102509295 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 728 22 35 0 0 chr12 18748256 18748285 -102509245 + AT_rich Low_complexity Low_complexity 1 29 0 4 728 645 216 52 9 chr12 18748301 18748470 -102509060 - Lx2B LINE L1 -200 6797 6625 4 728 240 202 18 18 chr12 18748543 18748654 -102508876 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 4 728 753 92 7 21 chr12 18748693 18748837 -102508693 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 4 728 640 291 40 81 chr12 18749019 18749229 -102508301 + RLTR11A2 LTR ERVK 134 334 -193 4 728 1136 88 0 0 chr12 18749229 18749376 -102508154 + B1_Mm SINE Alu 1 147 0 4 728 640 291 40 81 chr12 18749376 18749487 -102508043 + RLTR11A2 LTR ERVK 335 442 -85 4 728 220 204 26 26 chr12 18749493 18749644 -102507886 + T-rich Low_complexity Low_complexity 3 153 0 4 728 255 31 0 0 chr12 18749680 18749712 -102507818 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 728 458 168 25 25 chr12 18749940 18750099 -102507431 + (CATA)n Simple_repeat Simple_repeat 4 162 0 4 728 463 202 32 4 chr12 18750132 18750392 -102507138 + (CA)n Simple_repeat Simple_repeat 1 267 0 4 728 2862 47 0 12 chr12 18750861 18751206 -102506324 - IAPLTR4 LTR ERVK -4 341 1 4 728 4475 209 9 12 chr12 18751206 18752084 -102505446 - IAPLTR3-int LTR ERVK -20 6801 5927 4 728 3331 99 0 7 chr12 18752067 18752524 -102505006 - MMERVK10C-int LTR ERVK -1367 6214 5761 4 728 3284 102 7 15 chr12 18752512 18752971 -102504559 - MMERVK10C-int LTR ERVK -1936 5645 5191 4 728 810 94 39 16 chr12 18753236 18753365 -102504165 - MMERVK10C-int LTR ERVK -2920 4661 4530 4 728 488 182 38 34 chr12 18753377 18753499 -102504031 - MMERVK10C-int LTR ERVK -2380 2464 2357 4 728 3422 138 154 2 chr12 18753504 18754116 -102503414 - ETnERV2-int LTR ERVK -3135 4271 3567 4 728 680 219 379 30 chr12 18754138 18754360 -102503170 - ETnERV2-int LTR ERVK -4653 2753 2454 4 728 450 221 88 0 chr12 18754376 18754489 -102503041 - RLTR45-int LTR ERVK -5077 1060 938 4 728 610 114 19 116 chr12 18754613 18754804 -102502726 - RLTR45-int LTR ERVK -4937 2307 2175 4 728 379 216 39 49 chr12 18754802 18754904 -102502626 - RLTR45-int LTR ERVK -5055 351 251 4 728 792 217 44 52 chr12 18755006 18755254 -102502276 - IAPLTR3-int LTR ERVK -5755 1066 821 4 728 655 165 15 23 chr12 18755253 18755383 -102502147 - IAPLTR3-int LTR ERVK -6686 135 7 4 728 2690 67 3 17 chr12 18755388 18755738 -102501792 - IAPLTR4 LTR ERVK 0 345 1 4 728 428 236 252 0 chr12 18755763 18756024 -102501506 + L1MC1 LINE L1 6012 6333 -11 4 728 2097 133 44 0 chr12 18756034 18756372 -102501158 + L1_Mus3 LINE L1 6279 6631 -7 4 728 687 258 31 0 chr12 18756382 18756545 -102500985 + B3A SINE B2 1 168 -30 4 728 255 258 111 22 chr12 18756992 18757121 -102500409 + MIR SINE MIR 65 202 -66 4 728 378 0 0 0 chr12 18757724 18757766 -102499764 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 728 4063 154 20 14 chr12 18759203 18759977 -102497553 + L1Md_F3 LINE L1 218 1205 -5519 4 728 35208 49 2 1 chr12 18759954 18764395 -102493135 + L1Md_F3 LINE L1 1141 5586 -297 4 728 8309 39 2 3 chr12 18764395 18765394 -102492136 + L1Md_F3 LINE L1 5587 6584 0 4 728 256 240 147 0 chr12 18767567 18767642 -102489888 + PB1D10 SINE Alu 12 97 -20 4 728 756 199 0 20 chr12 18767648 18767797 -102489733 + B1_Mur4 SINE Alu 1 146 -4 4 728 813 229 20 25 chr12 18767844 18768041 -102489489 + ID_B1 SINE B4 21 216 -8 4 728 587 273 14 72 chr12 18768946 18769155 -102488375 + B4A SINE B4 24 220 -72 4 728 445 317 30 0 chr12 18769172 18769336 -102488194 + B3A SINE B2 2 170 -28 4 728 968 131 0 0 chr12 18769378 18769515 -102488015 + B1_Mur4 SINE Alu 1 137 -13 4 728 2276 99 0 58 chr12 18769642 18769985 -102487545 + ORR1A2 LTR MaLR 1 323 -4 4 728 225 159 0 0 chr12 18769996 18770040 -102487490 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 728 1139 112 6 0 chr12 18770045 18770224 -102487306 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 4 728 299 217 263 30 chr12 18770918 18771051 -102486479 - RSINE1 SINE B4 -1 164 1 4 728 237 311 53 8 chr12 18771521 18771654 -102485876 - MER33 DNA MER1_type 0 324 186 4 728 966 200 32 5 chr12 18771698 18771914 -102485616 - URR1B DNA MER1_type -3 222 1 4 728 270 222 0 0 chr12 18772127 18772190 -102485340 + GA-rich Low_complexity Low_complexity 1 63 0 4 728 420 20 0 0 chr12 18774518 18774567 -102482963 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 728 978 65 28 0 chr12 18775562 18775785 -102481745 + (TTCC)n Simple_repeat Simple_repeat 1 229 0 4 728 305 24 24 0 chr12 18776500 18776542 -102480988 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 728 375 254 0 2 chr12 18776542 18776646 -102480884 - B1_Mur4 SINE Alu -10 110 9 4 728 513 243 47 13 chr12 18776832 18776982 -102480548 + B3 SINE B2 58 212 -4 4 728 903 56 8 0 chr12 18777059 18777184 -102480346 + B1_Mm SINE Alu 22 147 0 4 728 198 0 0 0 chr12 18777210 18777232 -102480298 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 728 511 233 60 0 chr12 18777250 18777383 -102480147 + ID_B1 SINE B4 82 222 -2 4 728 365 215 17 78 chr12 18777562 18777678 -102479852 - HAL1-3A_ME LINE L1 -785 2073 1965 4 728 533 228 47 31 chr12 18777682 18777809 -102479721 - B1_Mur3 SINE Alu -12 137 9 4 728 728 205 14 9 chr12 18777839 18777980 -102479550 - ID_B1 SINE B4 -70 222 85 4 728 297 0 0 0 chr12 18779931 18779964 -102477566 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 728 700 242 55 30 chr12 18780015 18780215 -102477315 + B4A SINE B4 2 206 -86 4 728 751 225 0 0 chr12 18780443 18780572 -102476958 + RSINE1 SINE B4 3 131 -34 4 728 258 286 78 26 chr12 18781394 18781509 -102476021 + MIRb SINE MIR 23 143 -125 4 728 1947 142 10 10 chr12 18781511 18781825 -102475705 - MTC LTR MaLR 0 421 108 4 728 633 200 56 21 chr12 18781828 18781971 -102475559 + B1_Mur3 SINE Alu 2 149 0 4 728 327 167 0 0 chr12 18781975 18782041 -102475489 + GA-rich Low_complexity Low_complexity 4 69 0 4 728 621 82 0 0 chr12 18783338 18783435 -102474095 + (TC)n Simple_repeat Simple_repeat 2 98 0 4 728 660 71 0 0 chr12 18783435 18783519 -102474011 - B2_Mm2 SINE B2 -109 86 3 4 728 389 261 0 0 chr12 18783592 18783680 -102473850 + PB1D10 SINE Alu 30 117 0 4 728 433 212 12 0 chr12 18783685 18783765 -102473765 + RSINE1 SINE B4 53 133 -32 4 728 460 211 66 66 chr12 18783750 18783887 -102473643 + B1F1 SINE Alu 13 149 0 4 728 575 249 14 40 chr12 18783918 18784109 -102473421 + B3 SINE B2 15 195 0 4 728 787 228 30 12 chr12 18784668 18784837 -102472693 - B3A SINE B2 -24 174 3 4 728 240 272 113 9 chr12 18784917 18785032 -102472498 + L2c LINE L2 3038 3164 -223 4 728 343 294 28 0 chr12 18785219 18785328 -102472202 + PB1D7 SINE Alu 3 114 -6 4 728 311 333 8 41 chr12 18785335 18785457 -102472073 - MIRb SINE MIR -149 119 2 4 728 251 285 17 73 chr12 18786298 18786476 -102471054 + (CAGGA)n Simple_repeat Simple_repeat 2 169 0 4 728 700 291 43 32 chr12 18786845 18787125 -102470405 + B4A SINE B4 2 284 -8 4 728 301 116 0 0 chr12 18787417 18787460 -102470070 - URR1B DNA MER1_type 0 225 183 4 728 3433 54 28 7 chr12 18787732 18788159 -102469371 - RLTR10C LTR ERVK 0 436 1 4 728 41769 45 9 11 chr12 18788159 18793198 -102464332 - MMERVK10C-int LTR ERVK 0 7581 2552 4 728 437 63 0 0 chr12 18793204 18793267 -102464263 - MMERVK10C-int LTR ERVK -5634 1947 1885 4 728 339 138 17 0 chr12 18793274 18793332 -102464198 - MMERVK10C-int LTR ERVK -5627 1779 1721 4 728 299 252 148 40 chr12 18793316 18793465 -102464065 - MMERVK10C-int LTR ERVK -5449 688 524 4 728 649 195 104 129 chr12 18793461 18793702 -102463828 - RMER16-int LTR ERVK -4912 494 312 5 728 1040 161 4 86 chr12 18793789 18794033 -102463497 - MMERVK10C-int LTR ERVK -6629 952 729 5 728 2584 93 0 11 chr12 18794031 18794378 -102463152 - MMERVK10C-int LTR ERVK -7238 343 1 5 728 3421 47 28 21 chr12 18794378 18794811 -102462719 - RLTR10C LTR ERVK 0 436 1 5 728 409 141 0 23 chr12 18795113 18795200 -102462330 + G-rich Low_complexity Low_complexity 2 86 0 5 728 779 186 36 0 chr12 18795540 18795680 -102461850 + B1_Mus1 SINE Alu 3 147 -1 5 728 566 123 8 23 chr12 18795680 18795813 -102461717 + (TAAA)n Simple_repeat Simple_repeat 1 131 0 5 728 229 222 18 18 chr12 18795937 18795992 -102461538 + MLT1F2 LTR MaLR 222 276 -284 5 728 755 234 88 5 chr12 18796295 18796488 -102461042 + B3 SINE B2 3 211 -5 5 728 464 188 141 33 chr12 18796513 18796634 -102460896 + B1_Mus2 SINE Alu 1 134 -13 5 728 476 101 25 0 chr12 18796639 18796718 -102460812 + (GGGAGA)n Simple_repeat Simple_repeat 5 85 0 5 728 228 303 75 43 chr12 18797762 18797855 -102459675 - RMER21A LTR ERV1 -593 354 259 5 728 758 273 13 43 chr12 18798730 18798960 -102458570 + ID_B1 SINE B4 2 224 0 5 728 1022 109 0 0 chr12 18798996 18799134 -102458396 + B1_Mus1 SINE Alu 1 138 -10 5 728 419 363 51 9 chr12 18799280 18799494 -102458036 - L1MD LINE L1 -540 5819 5597 5 728 408 277 179 0 chr12 18799544 18799656 -102457874 - RSINE1 SINE B4 -29 136 5 5 728 2487 207 63 84 chr12 18799664 18800438 -102457092 + RMER17A2 LTR ERVK 1 736 -170 5 728 228 35 0 0 chr12 18800438 18800467 -102457063 + (CCA)n Simple_repeat Simple_repeat 2 30 0 5 728 2487 207 63 84 chr12 18800467 18800605 -102456925 + RMER17A2 LTR ERVK 737 893 -13 5 728 231 276 0 155 chr12 18800689 18800792 -102456738 - RMER21B LTR ERV1 -285 557 471 5 728 1381 175 180 142 chr12 18800721 18801166 -102456364 - MT2A LTR ERVL -71 462 1 5 728 580 252 14 0 chr12 18801167 18801310 -102456220 - L1MD LINE L1 -676 5566 5422 5 728 828 182 19 0 chr12 18801327 18801481 -102456049 + B3A SINE B2 1 157 -41 5 728 734 206 135 78 chr12 18801482 18801935 -102455595 - RLTR6_Mm LTR ERV1 -70 584 1 5 728 679 236 67 62 chr12 18802037 18802231 -102455299 - B3 SINE B2 -20 196 2 5 728 648 38 0 0 chr12 18802247 18802326 -102455204 + (TTTTC)n Simple_repeat Simple_repeat 2 80 0 5 728 1082 110 0 0 chr12 18802329 18802475 -102455055 - B1_Mus1 SINE Alu -1 147 2 5 728 1391 69 5 21 chr12 18802529 18802722 -102454808 - B2_Mm2 SINE B2 -3 192 3 5 728 316 269 9 88 chr12 18802754 18802868 -102454662 - RLTR25A LTR ERVK -476 627 523 5 728 822 149 14 41 chr12 18802769 18802916 -102454614 - B1_Mus1 SINE Alu 0 148 6 5 728 4165 58 2 0 chr12 18802971 18803473 -102454057 + RLTR1C LTR ERV1 1 503 0 5 728 226 233 0 0 chr12 18803474 18803534 -102453996 + T-rich Low_complexity Low_complexity 1 60 0 5 728 787 272 39 19 chr12 18803876 18804082 -102453448 - MTD LTR MaLR -14 405 196 5 728 837 255 66 0 chr12 18804118 18804314 -102453216 - B3 SINE B2 -7 209 1 5 728 833 217 106 24 chr12 18804314 18804510 -102453020 - MTD LTR MaLR -206 213 1 5 728 192 349 31 82 chr12 18804533 18804692 -102452838 - MIR3 SINE MIR -57 151 1 5 728 607 220 119 14 chr12 18805149 18805292 -102452238 + RSINE1 SINE B4 6 163 -2 5 728 738 0 0 0 chr12 18805296 18805378 -102452152 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 728 591 258 72 134 chr12 18805495 18805898 -102451632 - RMER10A LTR ERVL 0 442 65 5 728 3405 56 22 16 chr12 18806440 18806892 -102450638 - MURVY-LTR LTR ERV1 -64 455 1 5 728 232 286 54 0 chr12 18807456 18807512 -102450018 - MIRm SINE MIR -121 155 97 5 728 190 122 195 0 chr12 18807738 18807779 -102449751 - L3 LINE CR1 -3526 963 915 5 728 933 291 10 0 chr12 18807991 18808197 -102449333 - MTEa LTR MaLR -154 225 18 5 728 379 259 214 14 chr12 18808349 18808431 -102449099 + ID_B1 SINE B4 51 149 -75 5 728 994 130 7 0 chr12 18808431 18808577 -102448953 - B1_Mus1 SINE Alu -1 147 1 5 728 379 259 214 14 chr12 18808577 18808639 -102448891 + ID_B1 SINE B4 150 224 0 5 728 225 319 14 0 chr12 18808785 18808857 -102448673 - MLT1C LTR MaLR -62 405 333 5 728 374 134 88 15 chr12 18808867 18808935 -102448595 + MTB_Mm LTR MaLR 8 80 -327 5 728 2139 216 123 50 chr12 18808935 18809751 -102447779 - RLTR13D6 LTR ERVK 0 893 10 5 728 2252 96 9 6 chr12 18809757 18810083 -102447447 + MTB LTR MaLR 74 400 0 5 728 227 221 91 23 chr12 18810109 18810197 -102447333 - MLT1C LTR MaLR -137 253 160 5 728 571 273 119 15 chr12 18810222 18810423 -102447107 + B4A SINE B4 3 224 -68 5 728 276 222 0 0 chr12 18810543 18810597 -102446933 - MLT1C LTR MaLR -362 105 52 5 728 2191 100 33 3 chr12 18810597 18810899 -102446631 + RLTR10E LTR ERVK 1 311 0 5 728 549 116 26 0 chr12 18810899 18810988 -102446542 + MMERVK10C-int LTR ERVK 1 121 -1866 5 728 236 182 0 43 chr12 18810989 18811035 -102446495 + RLTR27 LTR ERVK 231 274 -35 5 728 1334 157 0 9 chr12 18811035 18811253 -102446277 + MMERVK10C-int LTR ERVK 226 441 -7140 5 728 10998 105 1 14 chr12 18811282 18812834 -102444696 + MMERVK10C-int LTR ERVK 407 1939 -5642 5 728 231 162 0 56 chr12 18812847 18812919 -102444611 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 5 728 186 71 0 0 chr12 18812921 18812949 -102444581 + (TAAAAA)n Simple_repeat Simple_repeat 5 32 0 5 728 247 0 0 73 chr12 18812960 18813001 -102444529 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 728 21670 88 5 8 chr12 18813020 18816233 -102441297 + MMERVK10C-int LTR ERVK 4453 7680 0 5 728 2152 106 33 3 chr12 18816233 18816535 -102440995 + RLTR10E LTR ERVK 1 311 0 5 728 566 93 0 11 chr12 18816875 18816962 -102440568 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 5 728 235 282 50 114 chr12 18816963 18816983 -102440547 - ID_B1 SINE B4 -85 139 120 5 728 714 93 0 0 chr12 18816983 18817091 -102440439 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 5 728 235 282 50 114 chr12 18817091 18817139 -102440391 - ID_B1 SINE B4 -105 119 9 5 728 290 212 42 70 chr12 18817139 18817210 -102440320 - ID4_ SINE ID -6 77 9 5 728 806 212 0 14 chr12 18817231 18817370 -102440160 - B1_Mur1 SINE Alu 0 149 13 5 728 383 229 17 92 chr12 18817266 18817386 -102440144 - MT2B LTR ERVL -331 270 160 5 728 890 144 7 0 chr12 18817429 18817575 -102439955 + B1_Mus1 SINE Alu 1 147 -1 5 728 544 309 40 7 chr12 18817699 18817849 -102439681 - RSINE1 SINE B4 0 165 11 5 728 409 248 92 18 chr12 18817982 18818146 -102439384 - MTD-int LTR MaLR -1082 176 1 5 728 798 230 183 6 chr12 18818152 18818492 -102439038 - MTD LTR MaLR 0 419 1 5 728 4000 227 48 102 chr12 18818554 18819339 -102438191 + MTD-int LTR MaLR 99 848 -410 5 728 1028 92 14 0 chr12 18819339 18819481 -102438049 + B1_Mm SINE Alu 4 147 0 5 728 4000 227 48 102 chr12 18819481 18819916 -102437614 + MTD-int LTR MaLR 849 1252 -6 5 728 1327 211 83 3 chr12 18819929 18820227 -102437303 + MTD LTR MaLR 25 322 -57 5 728 2718 130 40 34 chr12 18820492 18820969 -102436561 - RLTR45 LTR ERVK 0 482 3 5 728 7684 152 11 14 chr12 18820971 18822375 -102435155 - RLTR45-int LTR ERVK -413 7804 6331 5 728 3674 63 22 36 chr12 18822464 18822961 -102434569 - RLTR45-int LTR ERVK -5596 1648 1159 5 728 1739 82 78 0 chr12 18823132 18823388 -102434142 - RLTR45-int LTR ERVK -6067 1177 902 5 728 22 0 0 0 chr12 18823461 18823483 -102434047 + GC_rich Low_complexity Low_complexity 1 22 0 5 728 1824 70 4 0 chr12 18823516 18823745 -102433785 - RLTR45-int LTR ERVK -6334 910 681 5 728 1119 49 0 40 chr12 18824090 18824240 -102433290 - RLTR45-int LTR ERVK -6552 692 549 5 728 3824 113 26 28 chr12 18825008 18825580 -102431950 - RLTR45-int LTR ERVK -6673 571 1 5 728 2547 122 128 5 chr12 18825580 18826009 -102431521 - RLTR45 LTR ERVK 0 482 1 5 728 697 173 47 105 chr12 18826098 18826176 -102431354 + URR1B DNA MER1_type 3 100 -125 5 728 1093 90 7 0 chr12 18826176 18826320 -102431210 + B1_Mus2 SINE Alu 1 145 -2 5 728 697 135 18 151 chr12 18826320 18826438 -102431092 + URR1B DNA MER1_type 101 210 -15 5 728 350 252 0 132 chr12 18826876 18826990 -102430540 - PB1D10 SINE Alu 0 117 19 5 728 518 255 20 40 chr12 18827195 18827346 -102430184 - B1F SINE Alu 0 149 2 5 728 1338 186 171 12 chr12 18827373 18827695 -102429835 - ORR1D1 LTR MaLR -1 373 1 5 728 285 288 53 26 chr12 18828048 18828162 -102429368 - L2c LINE L2 -53 3334 3218 5 728 776 142 6 153 chr12 18828592 18828775 -102428755 + RLTR6_Mm LTR ERV1 1 156 -498 5 728 603 194 40 52 chr12 18828788 18829044 -102428486 + RLTR6_Mm LTR ERV1 223 447 0 5 728 2081 148 59 24 chr12 18829167 18829542 -102427988 - MTC LTR MaLR -33 388 1 5 728 4306 23 2 0 chr12 18829619 18830100 -102427430 + LTRIS_Mm LTR ERV1 1 482 0 5 728 180 0 0 0 chr12 18830576 18830596 -102426934 + (T)n Simple_repeat Simple_repeat 1 20 0 5 728 1064 95 0 39 chr12 18830596 18830750 -102426780 - B1_Mus1 SINE Alu 0 148 1 5 728 614 190 203 89 chr12 18831564 18831766 -102425764 + URR1B DNA MER1_type 1 225 0 5 728 1143 197 9 0 chr12 18831804 18832017 -102425513 - B3 SINE B2 0 216 2 5 728 248 304 0 61 chr12 18832940 18833038 -102424492 + MLT1K LTR MaLR 504 595 0 5 728 1166 290 11 35 chr12 18835261 18835294 -102422236 + ORR1D2 LTR MaLR 1 30 -340 5 728 1131 136 96 10 chr12 18835294 18835502 -102422028 - URR1A DNA MER1_type 0 226 1 5 728 1166 290 11 35 chr12 18835502 18835843 -102421687 + ORR1D2 LTR MaLR 31 366 -4 5 728 1613 244 43 0 chr12 18836133 18836531 -102420999 + MTD LTR MaLR 2 416 -3 5 728 531 272 29 29 chr12 18837572 18837746 -102419784 - ID_B1 SINE B4 0 224 51 5 728 252 0 0 0 chr12 18838190 18838218 -102419312 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 5 728 412 235 129 108 chr12 18838445 18838631 -102418899 + B3A SINE B2 8 197 -1 5 728 551 196 10 10 chr12 18838638 18838741 -102418789 + B1_Mur2 SINE Alu 7 109 -40 5 728 486 274 17 0 chr12 18838948 18839065 -102418465 + RSINE1 SINE B4 3 121 -44 5 728 1360 84 16 0 chr12 18839066 18839256 -102418274 + B2_Mm2 SINE B2 1 193 -2 5 728 31 26 0 0 chr12 18839349 18839387 -102418143 + AT_rich Low_complexity Low_complexity 1 38 0 5 728 207 146 0 0 chr12 18839418 18839459 -102418071 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 5 728 301 263 13 13 chr12 18839949 18840026 -102417504 + ID2 SINE ID 2 78 -5 5 728 212 311 22 22 chr12 18840026 18840041 -102417489 + B4A SINE B4 2 93 -199 5 728 186 302 122 44 chr12 18840301 18840391 -102417139 - L2b LINE L2 -51 3324 3228 5 728 318 319 70 59 chr12 18840401 18840657 -102416873 - ORR1E LTR MaLR 0 359 101 5 728 1007 157 0 0 chr12 18840944 18841091 -102416439 - B1_Mur1 SINE Alu 0 149 3 5 728 304 240 13 39 chr12 18841178 18841256 -102416274 + RSINE1 SINE B4 50 125 -40 5 728 1366 110 16 0 chr12 18841346 18841537 -102415993 + B2_Mm2 SINE B2 1 194 -1 5 728 2326 140 16 45 chr12 18842165 18842592 -102414938 - MTC LTR MaLR -6 415 1 5 728 468 280 9 0 chr12 18843628 18843735 -102413795 - RSINE1 SINE B4 -36 129 22 5 728 381 103 0 0 chr12 18844123 18844181 -102413349 + RMER6D LTR ERVK 1 58 -662 5 728 344 200 0 0 chr12 18844433 18844493 -102413037 + B3 SINE B2 70 129 -87 5 728 560 246 14 28 chr12 18844942 18845084 -102412446 - B1_Mm SINE Alu -7 140 1 5 728 539 40 14 0 chr12 18845264 18845338 -102412192 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 6 728 1381 204 89 87 chr12 18845480 18845836 -102411694 + MTD LTR MaLR 16 376 -43 6 728 719 175 33 53 chr12 18845836 18845987 -102411543 - B1_Mus1 SINE Alu 0 148 1 6 728 1381 204 89 87 chr12 18845987 18846033 -102411497 + MTD LTR MaLR 377 419 0 6 728 200 297 0 0 chr12 18846156 18846220 -102411310 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 728 285 93 0 0 chr12 18846254 18846297 -102411233 + MTC LTR MaLR 92 134 -287 6 728 633 51 20 10 chr12 18846835 18846934 -102410596 + (TG)n Simple_repeat Simple_repeat 1 100 0 6 728 588 285 92 42 chr12 18846963 18847201 -102410329 - B4A SINE B4 -38 254 5 6 728 525 244 84 0 chr12 18847333 18847452 -102410078 + ETnERV2-int LTR ERVK 7074 7202 -204 6 728 282 316 108 31 chr12 18847876 18848098 -102409432 + L2b LINE L2 3004 3242 -184 6 728 530 242 50 128 chr12 18848103 18848321 -102409209 + ID_B1 SINE B4 2 202 -22 6 728 245 194 153 0 chr12 18848553 18848625 -102408905 - MER5A1 DNA MER1_type -71 95 13 6 728 805 75 194 0 chr12 18849121 18849255 -102408275 + B2_Mm1a SINE B2 1 160 -33 6 728 360 0 0 0 chr12 18849255 18849295 -102408235 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 6 728 522 167 37 0 chr12 18849531 18849639 -102407891 - Lx3B LINE L1 0 6973 6862 6 728 1119 83 7 0 chr12 18850179 18850323 -102407207 + B1_Mm SINE Alu 3 147 0 6 728 1347 93 3 0 chr12 18850325 18850670 -102406860 + (GAAA)n Simple_repeat Simple_repeat 1 346 0 6 728 392 243 92 35 chr12 18851308 18851449 -102406081 - B1F SINE Alu 0 149 1 6 728 2177 61 29 3 chr12 18851870 18852181 -102405349 - IAPLTR2b LTR ERVK -8 319 1 6 728 442 297 34 11 chr12 18852181 18852357 -102405173 - MER63C DNA AcHobo -53 877 698 6 728 831 310 116 17 chr12 18852435 18852848 -102404682 - MER63C DNA AcHobo -237 693 240 6 728 738 186 21 7 chr12 18853115 18853256 -102404274 + B1_Mur1 SINE Alu 1 143 -6 6 728 618 226 66 0 chr12 18853452 18853589 -102403941 + B3 SINE B2 56 201 -15 6 728 213 291 0 0 chr12 18853610 18853696 -102403834 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 728 410 174 10 131 chr12 18853790 18853824 -102403706 + B3 SINE B2 66 99 -117 6 728 926 91 27 27 chr12 18853824 18853971 -102403559 + B1_Mus1 SINE Alu 2 148 0 6 728 410 174 10 131 chr12 18853971 18854035 -102403495 + B3 SINE B2 100 152 -64 6 728 536 223 9 0 chr12 18854925 18855037 -102402493 - PB1D9 SINE Alu -6 114 2 6 728 1101 96 0 27 chr12 18855087 18855237 -102402293 + B1_Mus2 SINE Alu 2 147 0 6 728 1527 219 83 8 chr12 18855654 18856040 -102401490 - MTD LTR MaLR 0 419 5 6 728 419 323 43 22 chr12 18856265 18856496 -102401034 - MER46C DNA MER2_type -7 331 96 6 728 713 201 0 21 chr12 18856517 18856659 -102400871 - B1_Mur3 SINE Alu -6 143 5 6 728 24 67 0 0 chr12 18856665 18856710 -102400820 + AT_rich Low_complexity Low_complexity 1 45 0 6 728 337 259 12 0 chr12 18856783 18856864 -102400666 + ID2 SINE ID 2 83 0 6 728 866 153 4 0 chr12 18856927 18857192 -102400338 + (TG)n Simple_repeat Simple_repeat 1 266 0 6 728 1931 113 251 44 chr12 18858764 18859218 -102398312 + RLTR6_Mm LTR ERV1 37 584 -70 6 728 1592 52 0 10 chr12 18862221 18862416 -102395114 - B2_Mm1a SINE B2 0 193 1 6 728 372 88 0 0 chr12 18862969 18863026 -102394504 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 728 245 268 0 40 chr12 18863087 18863188 -102394342 - B4A SINE B4 -195 97 1 6 728 267 326 31 0 chr12 18864969 18865067 -102392463 + MER5A1 DNA MER1_type 66 166 0 6 728 205 250 11 56 chr12 18865141 18865230 -102392300 - MER5B DNA MER1_type -62 116 32 6 728 470 287 35 28 chr12 18865628 18865816 -102391714 - B3A SINE B2 -4 191 3 6 728 205 111 18 36 chr12 18866081 18866137 -102391393 + T-rich Low_complexity Low_complexity 1 55 0 6 728 986 109 0 0 chr12 18866158 18866295 -102391235 - B1_Mm SINE Alu -10 137 1 6 728 833 188 174 0 chr12 18866348 18866572 -102390958 + Lx9 LINE L1 7382 7644 0 6 728 739 250 66 24 chr12 18866904 18867117 -102390413 - ID_B1 SINE B4 -2 222 1 6 728 311 192 14 0 chr12 18867627 18867700 -102389830 + GA-rich Low_complexity Low_complexity 3 76 0 6 728 246 262 121 16 chr12 18867719 18867843 -102389687 + Lx8 LINE L1 7335 7471 -2 6 728 254 195 66 44 chr12 18867891 18867982 -102389548 + (CCCTAA)n Simple_repeat Simple_repeat 2 94 0 6 728 294 290 63 97 chr12 18868021 18868258 -102389272 + MT2A LTR ERVL 74 302 -231 6 728 4723 104 14 83 chr12 18868844 18869787 -102387743 - RMER17D LTR ERVK -11 878 1 6 728 444 270 25 93 chr12 18870348 18870552 -102386978 - L1_Mur3 LINE L1 -4044 1836 1647 6 728 470 273 82 0 chr12 18870565 18870796 -102386734 - L1_Mur3 LINE L1 -4314 1563 1314 6 728 412 271 19 34 chr12 18871091 18871297 -102386233 - L1_Mur3 LINE L1 -6622 1106 904 6 728 277 346 48 96 chr12 18872435 18872643 -102384887 + ORR1D-int LTR MaLR 140 337 -1243 6 728 941 110 0 27 chr12 18872713 18872862 -102384668 - B1_Mus2 SINE Alu 0 147 3 6 728 6175 225 16 12 chr12 18872872 18874284 -102383246 - Lx4B LINE L1 -4 7054 5637 6 11 1322 322 33 60 chr12 18874294 18875014 -102382516 + ORR1D-int LTR MaLR 562 1262 -108 6 729 253 271 9 36 chr12 18875118 18875229 -102382301 - Lx4A LINE L1 -4 7054 6947 6 729 243 279 12 48 chr12 18875482 18875565 -102381965 - B3 SINE B2 -133 83 4 6 729 8042 195 97 35 chr12 18875660 18875809 -102381721 + MurSatRep1 Unknown Unknown 2 175 -1962 6 729 319 323 65 0 chr12 18875809 18875933 -102381597 - B1_Mur2 SINE Alu -17 132 1 6 729 8042 195 97 35 chr12 18875933 18876779 -102380751 + MurSatRep1 Unknown Unknown 176 1118 -1019 6 729 1410 76 5 0 chr12 18876779 18876963 -102380567 - B2_Mm1a SINE B2 -7 186 2 6 729 8042 195 97 35 chr12 18876963 18877174 -102380356 + MurSatRep1 Unknown Unknown 1119 1329 -808 6 729 505 34 0 54 chr12 18877174 18877267 -102380263 + (TATAA)n Simple_repeat Simple_repeat 5 92 0 6 729 8042 195 97 35 chr12 18877267 18878068 -102379462 + MurSatRep1 Unknown Unknown 1330 2134 -3 6 729 554 316 63 36 chr12 18878274 18878910 -102378620 + MurSatRep1 Unknown Unknown 1691 2137 0 6 729 428 229 58 58 chr12 18878853 18878992 -102378538 + MMSAT4 Satellite Satellite 30 168 0 6 729 498 306 61 45 chr12 18878950 18879582 -102377948 + MurSatRep1 Unknown Unknown 1691 2137 0 6 729 375 255 58 38 chr12 18879525 18879743 -102377787 + MMSAT4 Satellite Satellite 1 222 -12 6 729 3120 79 0 2 chr12 18879793 18880199 -102377331 + L1_Mus1 LINE L1 6163 6567 0 6 729 372 302 0 0 chr12 18880223 18880349 -102377181 + MMSAT4 Satellite Satellite 43 168 0 6 729 286 312 78 47 chr12 18880349 18880516 -102377014 + MurSatRep1 Unknown Unknown 1835 2136 -1 6 729 232 273 13 13 chr12 18880728 18880806 -102376724 + ORR1B2 LTR MaLR 276 353 -14 6 729 878 121 15 0 chr12 18881102 18881234 -102376296 + B1_Mus1 SINE Alu 2 135 -13 6 729 1980 245 62 58 chr12 18881441 18881812 -102375718 - L1_Mur2 LINE L1 -3753 2127 1774 6 729 351 60 0 43 chr12 18881812 18881882 -102375648 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 6 729 1163 52 0 0 chr12 18881882 18882018 -102375512 - B1_Mm SINE Alu -10 137 2 6 729 1980 251 72 35 chr12 18882018 18882801 -102374729 - L1_Mur2 LINE L1 -4107 1773 1002 6 729 207 0 0 0 chr12 18883382 18883405 -102374125 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 729 680 35 11 0 chr12 18883406 18883493 -102374037 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 729 21 0 0 0 chr12 18883511 18883532 -102373998 + AT_rich Low_complexity Low_complexity 1 21 0 6 729 513 236 71 29 chr12 18883543 18883713 -102373817 - Lx2B LINE L1 -199 6801 6625 6 729 416 211 18 0 chr12 18883755 18883864 -102373666 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 6 729 443 182 24 0 chr12 18883864 18884029 -102373501 + (TA)n Simple_repeat Simple_repeat 2 170 0 6 729 231 88 0 0 chr12 18884035 18884069 -102373461 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 6 729 34 0 0 0 chr12 18884151 18884185 -102373345 + AT_rich Low_complexity Low_complexity 1 34 0 6 729 605 227 55 17 chr12 18884185 18884362 -102373168 - Lx2B LINE L1 -162 6814 6637 6 729 262 231 26 0 chr12 18884416 18884494 -102373036 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 6 729 468 186 6 11 chr12 18884500 18884679 -102372851 + (TA)n Simple_repeat Simple_repeat 1 178 0 6 729 562 296 48 105 chr12 18884880 18885090 -102372440 + RLTR11A2 LTR ERVK 134 334 -193 6 729 1174 63 0 0 chr12 18885090 18885232 -102372298 + B1_Mm SINE Alu 1 142 -5 6 729 562 296 48 105 chr12 18885232 18885372 -102372158 + RLTR11A2 LTR ERVK 335 464 -63 6 729 345 227 38 31 chr12 18885390 18885549 -102371981 + T-rich Low_complexity Low_complexity 5 164 0 6 729 442 174 29 7 chr12 18885704 18885843 -102371687 + (CA)n Simple_repeat Simple_repeat 1 142 0 6 729 214 225 25 0 chr12 18885862 18885942 -102371588 + (CA)n Simple_repeat Simple_repeat 2 83 0 6 729 465 188 32 7 chr12 18885976 18886131 -102371399 + (CA)n Simple_repeat Simple_repeat 1 159 0 6 729 474 232 258 19 chr12 18886612 18886880 -102370650 + L1MC1 LINE L1 6002 6333 0 6 729 2305 94 41 3 chr12 18886890 18887231 -102370299 + L1_Mus3 LINE L1 6279 6632 -6 6 729 665 278 23 0 chr12 18887239 18887412 -102370118 + B3A SINE B2 1 177 -21 6 729 201 279 109 20 chr12 18887858 18887987 -102369543 + MIR SINE MIR 65 202 -66 6 729 351 0 0 0 chr12 18888563 18888602 -102368928 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 729 261 0 0 0 chr12 18888602 18888630 -102368900 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 729 238 250 17 0 chr12 18888630 18888690 -102368840 + (CATA)n Simple_repeat Simple_repeat 4 64 0 6 729 203 310 75 37 chr12 18890138 18890272 -102367258 - L2a LINE L2 -191 3235 3097 6 729 192 278 18 53 chr12 18891443 18891500 -102366030 - MIRm SINE MIR -112 164 110 6 729 317 222 72 24 chr12 18892139 18892222 -102365308 + PB1D10 SINE Alu 17 103 -14 6 729 789 193 7 20 chr12 18892224 18892372 -102365158 + B1_Mur4 SINE Alu 1 146 -4 6 729 905 189 32 42 chr12 18892400 18892616 -102364914 + ID_B1 SINE B4 3 216 -8 6 729 687 282 10 67 chr12 18893523 18893732 -102363798 + B4A SINE B4 24 220 -72 6 729 486 283 44 102 chr12 18893749 18893954 -102363576 + B3A SINE B2 2 194 -1 6 729 860 168 0 0 chr12 18893955 18894092 -102363438 + B1_Mur4 SINE Alu 1 137 -13 6 729 261 279 0 0 chr12 18894178 18894246 -102363284 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 729 2366 81 0 69 chr12 18894246 18894593 -102362937 + ORR1A2 LTR MaLR 1 323 -4 7 729 477 0 0 0 chr12 18894604 18894657 -102362873 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 729 195 69 0 0 chr12 18894882 18894911 -102362619 + (G)n Simple_repeat Simple_repeat 1 29 0 7 729 482 303 25 19 chr12 18895378 18895536 -102361994 - RSINE1 SINE B4 -6 159 1 7 729 21 0 0 0 chr12 18895541 18895562 -102361968 + AT_rich Low_complexity Low_complexity 1 21 0 7 729 207 69 0 0 chr12 18895562 18895591 -102361939 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 729 284 295 46 15 chr12 18896049 18896180 -102361350 - MER33 DNA MER1_type 0 324 190 7 729 1061 183 27 5 chr12 18896231 18896450 -102361080 - URR1B DNA MER1_type -1 224 1 7 729 210 217 0 0 chr12 18896658 18896727 -102360803 + GA-rich Low_complexity Low_complexity 1 69 0 7 729 2177 189 24 44 chr12 18897988 18898446 -102359084 - RLTR1D LTR ERV1 0 605 157 7 729 9156 266 63 57 chr12 18898522 18902214 -102355316 - RLTR6-int LTR ERV1 0 7778 4064 7 729 225 315 126 37 chr12 18902836 18902971 -102354559 - MLT1J2 LTR MaLR -16 432 286 7 729 222 37 0 0 chr12 18903399 18903426 -102354104 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 729 386 212 10 0 chr12 18904351 18904450 -102353080 + CT-rich Low_complexity Low_complexity 1 100 0 7 729 409 235 0 9 chr12 18905165 18905279 -102352251 - PB1D7 SINE Alu 0 120 9 7 729 655 257 84 132 chr12 18905403 18905611 -102351919 + B3 SINE B2 1 216 0 7 729 899 73 8 0 chr12 18905690 18905813 -102351717 + B1_Mm SINE Alu 24 147 0 7 729 268 261 121 40 chr12 18905856 18905964 -102351566 + B1F SINE Alu 1 119 -30 7 729 2491 111 0 45 chr12 18905964 18906340 -102351190 + RLTR10D LTR ERVK 1 359 0 7 729 268 261 121 40 chr12 18906340 18906355 -102351175 + B1F SINE Alu 120 134 -15 7 729 8331 65 1 24 chr12 18906356 18907420 -102350110 + IAP-d-int LTR ERVK 17 1056 -5486 7 729 12139 66 23 1 chr12 18907419 18908935 -102348595 + IAP-d-int LTR ERVK 4993 6542 0 7 729 2410 86 0 51 chr12 18908935 18909289 -102348241 + RLTR10D LTR ERVK 1 336 -23 7 729 312 111 0 0 chr12 18909519 18909573 -102347957 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 729 198 118 0 0 chr12 18909576 18909610 -102347920 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 729 565 197 56 32 chr12 18909620 18909746 -102347784 - B1_Mur3 SINE Alu -12 137 9 7 729 718 211 28 10 chr12 18909755 18909908 -102347622 - ID_B1 SINE B4 -44 248 86 7 729 1405 138 9 18 chr12 18911406 18911634 -102345896 + URR1A DNA MER1_type 1 226 0 7 729 736 232 55 30 chr12 18912452 18912652 -102344878 + B4A SINE B4 2 206 -86 7 729 691 248 0 0 chr12 18912880 18913009 -102344521 + RSINE1 SINE B4 3 131 -34 7 729 242 316 12 25 chr12 18913145 18913226 -102344304 - MER2 DNA MER2_type -259 86 7 7 729 222 242 0 46 chr12 18913668 18913733 -102343797 + G-rich Low_complexity Low_complexity 5 66 0 7 729 197 330 71 9 chr12 18913841 18913954 -102343576 + MIRb SINE MIR 23 142 -126 7 729 1858 174 14 148 chr12 18913957 18914274 -102343256 - MTC LTR MaLR 0 421 108 7 729 755 156 49 21 chr12 18914274 18914418 -102343112 + B1_Mur3 SINE Alu 2 149 0 7 729 1858 174 14 148 chr12 18914418 18914475 -102343055 - MTC LTR MaLR -314 107 104 7 729 327 78 0 0 chr12 18914475 18914526 -102343004 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 7 729 1858 174 14 148 chr12 18914526 18914636 -102342894 - MTC LTR MaLR -318 103 1 7 729 275 104 102 20 chr12 18915712 18915761 -102341769 + MTEa LTR MaLR 1 53 -326 7 729 21 0 0 0 chr12 18915763 18915784 -102341746 + AT_rich Low_complexity Low_complexity 1 21 0 7 729 743 222 99 11 chr12 18915793 18915984 -102341546 - B3 SINE B2 -6 210 3 7 729 908 166 14 0 chr12 18916013 18916158 -102341372 - B1_Mus1 SINE Alu -1 147 1 7 729 1371 162 0 5 chr12 18916189 18916412 -102341118 + URR1B DNA MER1_type 1 222 -3 7 729 810 206 175 104 chr12 18916415 18916724 -102340806 + MTE2a LTR MaLR 35 365 -14 7 729 276 359 39 79 chr12 18916831 18916958 -102340572 + RSINE1 SINE B4 34 155 -10 7 729 231 133 0 0 chr12 18916971 18917016 -102340514 + (CAGAGA)n Simple_repeat Simple_repeat 3 47 0 7 729 483 187 58 102 chr12 18918414 18918551 -102338979 - ETnERV2-int LTR ERVK -3182 132 2 7 729 2622 112 7 12 chr12 18918558 18918964 -102338566 - RLTR9E LTR ERVK -5 404 1 7 729 490 118 0 13 chr12 18918964 18919041 -102338489 - ETnERV2-int LTR ERVK 0 7406 7331 7 729 15178 213 39 27 chr12 18919254 18924682 -102332848 - ETnERV2-int LTR ERVK -980 6426 285 7 729 1229 53 18 6 chr12 18924682 18924852 -102332678 + L1Md_F2 LINE L1 6407 6578 -4 7 729 7951 206 26 23 chr12 18924852 18925132 -102332398 - ETnERV2-int LTR ERVK -3030 284 3 7 729 2626 111 7 25 chr12 18925139 18925406 -102332124 - RLTR9E LTR ERVK -6 403 141 7 729 2675 104 24 156 chr12 18925406 18925996 -102331534 + RLTR1B LTR ERV1 1 512 0 7 729 2626 111 7 25 chr12 18925996 18926136 -102331394 - RLTR9E LTR ERVK -269 140 3 7 729 436 215 20 61 chr12 18926201 18926215 -102331315 - B3A SINE B2 -101 97 89 7 729 459 0 0 0 chr12 18926215 18926266 -102331264 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 729 584 131 0 0 chr12 18926266 18926350 -102331180 - B2_Mm2 SINE B2 -109 86 3 7 729 386 205 0 13 chr12 18926431 18926510 -102331020 + PB1D10 SINE Alu 40 117 0 7 729 486 185 12 0 chr12 18926515 18926596 -102330934 + RSINE1 SINE B4 53 134 -31 7 729 422 258 73 24 chr12 18926594 18926717 -102330813 + B1F1 SINE Alu 21 149 0 7 729 592 252 0 43 chr12 18926751 18926949 -102330581 + B3 SINE B2 18 195 0 7 729 810 217 30 18 chr12 18927515 18927679 -102329851 - B3A SINE B2 -30 168 3 7 729 209 295 106 64 chr12 18927682 18927870 -102329660 + L2c LINE L2 2963 3158 -229 7 729 374 298 29 0 chr12 18928068 18928172 -102329358 + PB1D7 SINE Alu 8 114 -6 7 729 233 319 98 32 chr12 18928186 18928292 -102329238 - MIRc SINE MIR -155 113 2 7 729 214 325 6 63 chr12 18929095 18929269 -102328261 + (CAGGA)n Simple_repeat Simple_repeat 2 165 0 7 729 304 346 118 20 chr12 18929349 18929428 -102328102 + L1MD2 LINE L1 6084 6172 -187 7 729 363 44 0 0 chr12 18929428 18929473 -102328057 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 729 304 346 118 20 chr12 18929473 18929638 -102327892 + L1MD2 LINE L1 6173 6351 -8 7 729 689 299 45 35 chr12 18929651 18929939 -102327591 + B4A SINE B4 2 292 0 7 729 958 112 0 7 chr12 18930221 18930365 -102327165 - URR1B DNA MER1_type 0 225 83 7 729 182 274 12 142 chr12 18930959 18931056 -102326474 + MIRb SINE MIR 80 163 -105 7 729 228 347 68 14 chr12 18931057 18931203 -102326327 - RMER15 LTR ERVL -6 569 416 7 729 275 250 0 29 chr12 18931482 18931552 -102325978 - MT2A LTR ERVL -457 76 9 7 729 794 265 19 30 chr12 18932053 18932343 -102325187 - MTE2a LTR MaLR -5 374 34 7 729 811 186 168 11 chr12 18932343 18932533 -102324997 + URR1A DNA MER1_type 1 220 -6 7 729 601 132 0 70 chr12 18933393 18933580 -102323950 + G-rich Low_complexity Low_complexity 2 175 0 7 729 743 199 28 0 chr12 18933921 18934062 -102323468 + B1_Mus1 SINE Alu 3 147 -1 7 729 182 136 0 22 chr12 18934062 18934107 -102323423 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 7 729 270 317 94 31 chr12 18934167 18934294 -102323236 + MLT1F2 LTR MaLR 142 276 -284 7 729 911 98 18 6 chr12 18934362 18934526 -102323004 + (GA)n Simple_repeat Simple_repeat 2 167 0 7 729 214 246 0 0 chr12 18934676 18934733 -102322797 + CT-rich Low_complexity Low_complexity 1 57 0 7 729 3334 53 2 0 chr12 18934747 18935142 -102322388 - MTA_Mm LTR MaLR 0 396 1 7 729 8968 53 3 0 chr12 18935142 18936237 -102321293 - MTA_Mm-int LTR MaLR 0 1098 1 7 729 3433 33 3 0 chr12 18936237 18936629 -102320901 - MTA_Mm LTR MaLR 0 396 4 7 729 255 31 0 0 chr12 18936629 18936661 -102320869 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 729 740 245 26 107 chr12 18938670 18939048 -102318482 - RLTR46 LTR ERVK 0 357 1 7 729 654 307 10 50 chr12 18939256 18939455 -102318075 + ID_B1 SINE B4 23 213 -11 7 729 258 32 0 0 chr12 18939456 18939487 -102318043 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 729 1027 101 0 0 chr12 18939510 18939648 -102317882 + B1_Mus1 SINE Alu 1 138 -10 7 729 450 0 0 0 chr12 18939714 18939764 -102317766 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 729 606 14 0 0 chr12 18939764 18939834 -102317696 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 729 542 342 39 3 chr12 18939854 18940099 -102317431 - L1MD LINE L1 -2147 5848 5597 7 729 346 310 177 0 chr12 18940149 18940262 -102317268 - RSINE1 SINE B4 -29 136 4 7 729 805 93 34 0 chr12 18940269 18940387 -102317143 + RMER17D2 LTR ERVK 1 122 -687 7 729 829 109 0 42 chr12 18940390 18940523 -102317007 + RMER17D2 LTR ERVK 673 800 -9 7 729 3583 85 38 6 chr12 18940523 18940825 -102316705 + RLTR1B LTR ERV1 1 303 -209 7 729 219 88 0 0 chr12 18940825 18940859 -102316671 + (CCCCAG)n Simple_repeat Simple_repeat 1 34 0 7 729 3583 85 38 6 chr12 18940859 18941052 -102316478 + RLTR1B LTR ERV1 304 511 -1 7 729 237 292 27 127 chr12 18941130 18941240 -102316290 - RMER21A LTR ERV1 -273 674 576 7 729 1295 175 178 137 chr12 18941162 18941606 -102315924 - MT2A LTR ERVL -71 462 1 7 729 508 248 28 7 chr12 18941607 18941749 -102315781 - L1MD LINE L1 -676 5566 5422 7 729 714 257 15 56 chr12 18941766 18941943 -102315587 + B3A SINE B2 1 177 -21 7 729 777 62 0 0 chr12 18941943 18942055 -102315475 + (CA)n Simple_repeat Simple_repeat 1 112 0 7 729 714 257 15 56 chr12 18942055 18942075 -102315455 + B3A SINE B2 178 190 -8 7 729 629 247 73 68 chr12 18942126 18942317 -102315213 - B3 SINE B2 -23 193 2 7 729 240 188 37 24 chr12 18942325 18942407 -102315123 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 7 729 861 129 0 67 chr12 18942409 18942558 -102314972 - B1_Mus1 SINE Alu 0 148 10 7 729 1499 225 82 41 chr12 18942943 18943147 -102314383 - MTD LTR MaLR -14 405 192 7 729 763 271 28 32 chr12 18943147 18943364 -102314166 - B3 SINE B2 0 216 1 7 729 1499 225 82 41 chr12 18943364 18943548 -102313982 - MTD LTR MaLR -228 191 1 7 729 6040 68 36 5 chr12 18943667 18944451 -102313079 - RLTR13C2 LTR ERVK 0 808 1 7 729 482 261 143 14 chr12 18944974 18945114 -102312416 + RSINE1 SINE B4 6 163 -2 7 729 534 43 0 0 chr12 18945127 18945196 -102312334 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 729 907 131 12 6 chr12 18945450 18945619 -102311911 + (GGGAGA)n Simple_repeat Simple_repeat 3 172 0 7 729 355 285 50 21 chr12 18946277 18946417 -102311113 + MLT1N2 LTR MaLR 414 557 -5 7 729 214 304 54 0 chr12 18946816 18946872 -102310658 - MIRm SINE MIR -121 155 97 7 729 2233 187 78 0 chr12 18947164 18947624 -102309906 + RLTR1 LTR ERV1 129 624 0 8 729 180 98 191 24 chr12 18947645 18947687 -102309843 - L3 LINE CR1 -3526 963 915 8 729 1058 266 14 0 chr12 18947900 18948122 -102309408 - MTEa LTR MaLR -154 225 1 8 729 212 235 78 0 chr12 18948268 18948319 -102309211 + B4A SINE B4 69 123 -169 8 729 276 287 36 36 chr12 18948285 18948333 -102309197 + PB1D10 SINE Alu 5 50 -67 8 729 966 135 0 20 chr12 18948333 18948484 -102309046 - B1_Mus1 SINE Alu 0 148 1 8 729 276 287 36 36 chr12 18948484 18948547 -102308983 + PB1D10 SINE Alu 51 115 -2 8 729 3861 237 69 57 chr12 18948622 18949766 -102307764 + MTD-int LTR MaLR 100 1257 -1 8 729 1633 203 97 3 chr12 18949775 18950136 -102307394 + MTD LTR MaLR 25 419 0 8 729 865 239 15 19 chr12 18950667 18950872 -102306658 - B3 SINE B2 -11 205 2 8 729 322 304 64 93 chr12 18951075 18951311 -102306219 + L1MEd LINE L1 883 1111 -5008 8 729 531 242 0 0 chr12 18951332 18951510 -102306020 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 8 729 719 218 18 100 chr12 18951579 18951705 -102305825 + URR1B DNA MER1_type 1 111 -114 8 729 8231 23 2 3 chr12 18951705 18952635 -102304895 + RLTR13B3 LTR ERVK 1 929 0 8 729 719 218 18 100 chr12 18952635 18952737 -102304793 + URR1B DNA MER1_type 112 210 -15 8 729 335 312 0 0 chr12 18953089 18953166 -102304364 - ID4_ SINE ID 0 83 7 8 729 375 277 0 50 chr12 18953195 18953294 -102304236 - PB1D10 SINE Alu -11 106 13 8 729 509 274 13 40 chr12 18953492 18953644 -102303886 - B1F SINE Alu 0 149 2 8 729 1405 181 161 6 chr12 18953671 18953994 -102303536 - ORR1D1 LTR MaLR -1 373 1 8 729 279 288 53 26 chr12 18954347 18954461 -102303069 - L2c LINE L2 -53 3334 3218 8 729 229 289 50 50 chr12 18954607 18954687 -102302843 + MamGypLTR1c LTR Gypsy 561 640 -163 8 729 2030 158 58 32 chr12 18955010 18955388 -102302142 - MTC LTR MaLR -33 388 1 8 729 306 123 0 0 chr12 18955447 18955504 -102302026 + (TGG)n Simple_repeat Simple_repeat 2 58 0 8 729 1001 90 0 94 chr12 18955937 18956096 -102301434 - B1_Mus1 SINE Alu 0 148 5 8 729 578 191 204 90 chr12 18956910 18957111 -102300419 + URR1B DNA MER1_type 2 225 0 8 729 1114 201 5 0 chr12 18957149 18957363 -102300167 - B3 SINE B2 0 216 2 8 729 3208 103 26 2 chr12 18958958 18959424 -102298106 - RLTR44C LTR ERVK -25 477 1 8 729 229 278 129 73 chr12 18960632 18960756 -102296774 - MER82 DNA MER2_type -251 402 272 8 729 1383 290 11 32 chr12 18961099 18961132 -102296398 + ORR1D2 LTR MaLR 1 33 -337 8 729 1049 150 91 10 chr12 18961132 18961341 -102296189 - URR1A DNA MER1_type 0 226 1 8 729 1383 290 11 32 chr12 18961341 18961681 -102295849 + ORR1D2 LTR MaLR 34 366 -4 8 729 267 345 35 0 chr12 18961856 18961972 -102295558 - RMER15 LTR ERVL -16 559 440 8 729 1822 234 43 2 chr12 18961972 18962371 -102295159 + MTD LTR MaLR 2 416 -3 8 729 560 290 29 29 chr12 18963410 18963584 -102293946 - ID_B1 SINE B4 0 224 51 8 729 330 194 122 37 chr12 18964266 18964373 -102293157 + B3 SINE B2 8 123 -72 8 729 390 42 0 0 chr12 18964410 18964458 -102293072 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 729 564 206 10 10 chr12 18964487 18964590 -102292940 + B1_Mur2 SINE Alu 7 109 -40 8 729 559 256 17 0 chr12 18964797 18964914 -102292616 + RSINE1 SINE B4 3 121 -44 8 729 1255 104 16 0 chr12 18964915 18965107 -102292423 + B2_Mm2 SINE B2 1 195 0 8 729 30 27 0 0 chr12 18965198 18965235 -102292295 + AT_rich Low_complexity Low_complexity 1 37 0 8 729 207 146 0 0 chr12 18965267 18965308 -102292222 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 8 729 204 314 122 44 chr12 18965545 18965635 -102291895 - L2b LINE L2 -51 3324 3228 8 729 436 282 123 82 chr12 18965643 18965961 -102291569 - ORR1E LTR MaLR 0 370 1 8 729 1005 163 0 0 chr12 18966196 18966343 -102291187 - B1_Mur1 SINE Alu 0 149 3 8 729 356 268 80 30 chr12 18966430 18966530 -102291000 + RSINE1 SINE B4 50 154 -11 8 729 1423 98 0 5 chr12 18966599 18966793 -102290737 + B2_Mm2 SINE B2 1 193 -2 8 729 2404 145 2 96 chr12 18967422 18967757 -102289773 - MTC LTR MaLR -6 415 105 8 729 1288 27 0 0 chr12 18967757 18967904 -102289626 + B1_Mus2 SINE Alu 1 147 0 8 729 2404 145 2 96 chr12 18967904 18968026 -102289504 - MTC LTR MaLR -317 104 1 8 729 511 303 68 8 chr12 18969037 18969170 -102288360 - RSINE1 SINE B4 -4 161 21 8 729 3779 16 121 0 chr12 18969491 18969931 -102287599 + MT2_Mm LTR ERVL 1 493 0 8 729 37247 77 8 0 chr12 18969931 18975242 -102282288 + MERVL_2A-int LTR ERVL 1 5453 -308 8 729 403 167 46 35 chr12 18975249 18975336 -102282194 + ORR1A3-int LTR MaLR 553 640 -1323 8 729 319 0 0 0 chr12 18975336 18975374 -102282156 + MERVL_2A-int LTR ERVL 5448 5485 0 8 729 4490 18 0 0 chr12 18975374 18975867 -102281663 + MT2_Mm LTR ERVL 1 493 0 8 729 219 259 74 0 chr12 18975877 18975924 -102281606 + B4A SINE B4 30 80 -212 8 729 415 102 0 0 chr12 18975924 18975983 -102281547 + RMER6D LTR ERVK 1 59 -661 8 729 380 230 12 62 chr12 18976234 18976369 -102281161 + B3 SINE B2 70 193 0 8 729 234 128 26 0 chr12 18976455 18976494 -102281036 + MLT1C LTR MaLR 149 188 -279 8 729 578 39 0 13 chr12 18976795 18976873 -102280657 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 8 729 1302 236 88 108 chr12 18977015 18977318 -102280212 + MTD LTR MaLR 16 352 -67 8 729 792 0 0 0 chr12 18977318 18977406 -102280124 + (TTCCC)n Simple_repeat Simple_repeat 5 92 0 8 729 1302 236 88 108 chr12 18977406 18977467 -102280063 + MTD LTR MaLR 353 374 -45 8 729 676 206 34 34 chr12 18977467 18977613 -102279917 - B1_Mus1 SINE Alu -2 146 1 8 729 1302 236 88 108 chr12 18977613 18977656 -102279874 + MTD LTR MaLR 375 416 -3 8 729 1120 113 6 0 chr12 18977823 18977982 -102279548 + B2_Mm1a SINE B2 1 160 -33 8 729 432 0 0 0 chr12 18977982 18978030 -102279500 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 8 729 477 194 37 0 chr12 18978271 18978379 -102279151 - Lx3B LINE L1 0 6973 6862 8 729 461 206 92 35 chr12 18979522 18979663 -102277867 - B1F SINE Alu 0 149 1 8 729 997 339 72 72 chr12 18980033 18980726 -102276804 - MER63C DNA AcHobo -5 925 233 8 729 791 171 21 7 chr12 18980988 18981129 -102276401 + B1_Mur1 SINE Alu 1 143 -6 8 729 646 246 79 59 chr12 18981269 18981472 -102276058 + B3 SINE B2 10 216 0 8 729 342 257 0 0 chr12 18981482 18981587 -102275943 + (TG)n Simple_repeat Simple_repeat 2 106 0 8 729 544 216 0 30 chr12 18981603 18981703 -102275827 + B3 SINE B2 3 99 -117 8 729 838 116 0 120 chr12 18981703 18981870 -102275660 + B1_Mus1 SINE Alu 2 148 0 8 729 344 229 15 0 chr12 18981894 18981977 -102275553 + B3 SINE B2 73 156 -42 8 729 490 243 18 0 chr12 18982865 18982976 -102274554 - PB1D9 SINE Alu -6 114 2 8 729 1110 82 0 20 chr12 18983026 18983175 -102274355 + B1_Mus2 SINE Alu 2 147 0 8 729 1629 214 80 8 chr12 18983593 18983966 -102273564 - MTD LTR MaLR 0 419 20 8 729 277 269 0 0 chr12 18984056 18984123 -102273407 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 729 2110 122 0 70 chr12 18984123 18984466 -102273064 + ORR1A2 LTR MaLR 1 319 -8 8 729 237 328 123 15 chr12 18986347 18986477 -102271053 - MLT1J1 LTR MaLR -18 426 283 8 729 342 80 0 0 chr12 18986906 18986956 -102270574 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 729 188 370 100 0 chr12 18987469 18987569 -102269961 + MIRb SINE MIR 114 223 -45 8 729 240 146 24 0 chr12 18987849 18987890 -102269640 + MTE2a LTR MaLR 11 52 -327 8 729 28 0 0 0 chr12 18987894 18987922 -102269608 + AT_rich Low_complexity Low_complexity 1 28 0 8 729 705 238 105 11 chr12 18987931 18988122 -102269408 - B3 SINE B2 -6 210 2 8 729 766 165 16 0 chr12 18988147 18988274 -102269256 - B1_Mus2 SINE Alu -1 146 18 8 729 2607 138 5 12 chr12 18988589 18988999 -102268531 - RLTR9E LTR ERVK -2 407 1 8 729 458 132 0 13 chr12 18988999 18989076 -102268454 - ETnERV2-int LTR ERVK 0 7406 7331 8 729 8439 63 35 50 chr12 18989279 18990467 -102267063 - ETnERV2-int LTR ERVK -983 6423 5254 8 729 4202 53 5 4 chr12 18990467 18991017 -102266513 + MTA_Mm-int LTR MaLR 577 1154 -638 8 729 3188 37 50 0 chr12 18991017 18991394 -102266136 + MTA_Mm LTR MaLR 1 396 0 8 729 3182 248 74 30 chr12 18991394 18992896 -102264634 - ETnERV2-int LTR ERVK -2852 4554 2215 8 729 327 271 138 31 chr12 18993806 18993966 -102263564 - HAL1-3A_ME LINE L1 -413 2445 2269 8 729 346 248 72 30 chr12 18994065 18994204 -102263326 - PB1D7 SINE Alu 0 150 9 8 729 765 230 39 28 chr12 18994396 18994575 -102262955 + B3 SINE B2 34 214 -2 8 729 780 61 0 0 chr12 18994661 18994759 -102262771 - B1_Mus2 SINE Alu -9 138 41 8 729 289 150 31 77 chr12 18994710 18994775 -102262755 - 4.5SRNA scRNA scRNA -8 86 25 8 729 555 172 73 8 chr12 18994797 18994920 -102262610 + ID_B1 SINE B4 92 222 -2 8 729 264 30 0 0 chr12 18995146 18995179 -102262351 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 729 581 226 39 46 chr12 18995194 18995324 -102262206 - B1_Mur3 SINE Alu -17 132 4 8 729 692 200 15 0 chr12 18995348 18995478 -102262052 - ID_B1 SINE B4 -5 219 88 8 729 1287 165 9 18 chr12 18996962 18997190 -102260340 + URR1A DNA MER1_type 1 226 0 8 729 257 0 30 0 chr12 18997933 18997966 -102259564 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 8 729 738 246 50 25 chr12 18998015 18998215 -102259315 + B4A SINE B4 2 206 -86 8 729 666 248 0 0 chr12 18998443 18998568 -102258962 + RSINE1 SINE B4 3 127 -38 8 729 212 218 0 52 chr12 18999226 18999284 -102258246 + G-rich Low_complexity Low_complexity 5 59 0 8 729 188 312 80 27 chr12 18999399 18999511 -102258019 + MIRb SINE MIR 23 140 -128 8 729 1939 151 10 10 chr12 18999516 18999830 -102257700 - MTC LTR MaLR 0 421 108 8 729 684 200 56 21 chr12 18999833 18999976 -102257554 + B1_Mur3 SINE Alu 2 149 0 8 729 825 76 0 0 chr12 19000013 19000131 -102257399 + (GA)n Simple_repeat Simple_repeat 1 118 0 1 729 589 209 18 0 chr12 19000136 19000246 -102257284 - MTC LTR MaLR -309 112 1 2 729 240 146 24 0 chr12 19001357 19001398 -102256132 + MTE2a LTR MaLR 11 52 -327 3 729 705 238 105 11 chr12 19001431 19001622 -102255908 - B3 SINE B2 -6 210 2 4 729 858 179 14 0 chr12 19001647 19001792 -102255738 - B1_Mus1 SINE Alu -1 147 1 5 729 1323 176 0 5 chr12 19001823 19002046 -102255484 + URR1B DNA MER1_type 1 222 -3 6 729 777 219 156 81 chr12 19002049 19002357 -102255173 + MTE2a LTR MaLR 35 365 -14 3 729 248 262 24 59 chr12 19002473 19002558 -102254972 + RSINE1 SINE B4 42 123 -42 7 729 180 0 0 0 chr12 19002587 19002607 -102254923 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 729 1125 84 0 0 chr12 19002607 19002773 -102254757 + (GA)n Simple_repeat Simple_repeat 1 167 0 9 729 1224 89 0 0 chr12 19004230 19004410 -102253120 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 729 630 95 0 0 chr12 19004417 19004501 -102253029 - B2_Mm2 SINE B2 -109 86 3 1 729 355 279 0 0 chr12 19004576 19004662 -102252868 + PB1D10 SINE Alu 32 117 0 1 729 464 210 12 0 chr12 19004667 19004748 -102252782 + RSINE1 SINE B4 53 134 -31 1 729 448 284 22 22 chr12 19004732 19004869 -102252661 + B1F1 SINE Alu 13 149 0 1 729 667 217 16 42 chr12 19004900 19005091 -102252439 + B3 SINE B2 15 195 0 1 730 749 242 33 23 chr12 19005610 19005822 -102251708 - B3A SINE B2 -1 215 3 1 730 238 314 87 51 chr12 19005825 19006020 -102251510 + L2c LINE L2 2963 3164 -223 1 730 333 294 28 0 chr12 19006206 19006315 -102251215 + PB1D7 SINE Alu 3 114 -6 1 730 341 310 8 41 chr12 19006323 19006444 -102251086 - MIRb SINE MIR -150 118 2 1 730 300 27 0 0 chr12 19007432 19007469 -102250061 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 730 690 296 47 32 chr12 19007647 19007926 -102249604 + B4A SINE B4 2 284 -8 2 730 958 134 179 16 chr12 19008219 19008409 -102249121 - URR1B DNA MER1_type -1 224 4 2 730 3814 50 0 0 chr12 19008472 19009000 -102248530 - L1Md_F2 LINE L1 -539 6043 5516 2 730 3786 91 2 17 chr12 19009001 19009537 -102247993 + L1Md_F2 LINE L1 6055 6582 0 2 730 295 262 3 33 chr12 19010568 19010668 -102246862 - MT2A LTR ERVL -496 105 9 2 730 901 268 11 29 chr12 19011161 19011432 -102246098 - MTE2b LTR MaLR -12 367 47 2 730 872 203 79 0 chr12 19011432 19011634 -102245896 + URR1A DNA MER1_type 3 220 -6 2 730 912 103 0 33 chr12 19012495 19012675 -102244855 + (GGGGA)n Simple_repeat Simple_repeat 2 175 0 2 730 755 186 36 0 chr12 19013036 19013176 -102244354 + B1_Mus1 SINE Alu 3 147 -1 2 730 386 69 0 17 chr12 19013178 19013237 -102244293 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 2 730 276 248 77 53 chr12 19013288 19013419 -102244111 + MLT1F2 LTR MaLR 129 277 -292 3 730 664 239 96 0 chr12 19013710 19013877 -102243653 + B3 SINE B2 3 185 -31 3 730 581 268 47 8 chr12 19014271 19014399 -102243131 - ETnERV2-int LTR ERVK -204 7202 7070 3 730 464 197 157 33 chr12 19014454 19014575 -102242955 + B1_Mur2 SINE Alu 1 136 -13 3 730 893 46 23 8 chr12 19014580 19014712 -102242818 + (GA)n Simple_repeat Simple_repeat 1 134 0 3 730 222 37 0 0 chr12 19014873 19014900 -102242630 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 730 354 61 0 0 chr12 19014912 19014961 -102242569 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 730 720 274 13 44 chr12 19017286 19017515 -102240015 + ID_B1 SINE B4 3 224 0 3 730 919 135 0 0 chr12 19017547 19017680 -102239850 + B1_Mus1 SINE Alu 1 133 -15 3 730 531 0 0 0 chr12 19017778 19017837 -102239693 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 730 487 359 38 0 chr12 19017896 19018108 -102239422 - L1MD LINE L1 -426 5816 5597 4 730 410 255 189 0 chr12 19018165 19018271 -102239259 - RSINE1 SINE B4 -36 129 4 4 730 4105 148 56 9 chr12 19018278 19018602 -102238928 + RMER17D2 LTR ERVK 1 346 -463 4 730 635 0 0 13 chr12 19018602 19018678 -102238852 + (TCTCC)n Simple_repeat Simple_repeat 2 76 0 4 730 4105 148 56 9 chr12 19018678 19018964 -102238566 + RMER17D2 LTR ERVK 347 640 -169 4 730 240 35 0 0 chr12 19018964 19018993 -102238537 + (CCA)n Simple_repeat Simple_repeat 2 30 0 4 730 4105 148 56 9 chr12 19018993 19019154 -102238376 + RMER17D2 LTR ERVK 641 807 -2 4 730 239 276 2 149 chr12 19019223 19019334 -102238196 - RMER21A LTR ERV1 -287 660 471 4 730 1044 236 104 41 chr12 19019255 19019706 -102237824 - MT2A LTR ERVL -71 462 1 4 730 532 273 14 0 chr12 19019707 19019850 -102237680 - L1MD LINE L1 -676 5566 5422 4 730 708 262 27 21 chr12 19019869 19020035 -102237495 + B3A SINE B2 3 171 -27 4 730 312 70 0 0 chr12 19020035 19020078 -102237452 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 730 708 262 27 21 chr12 19020078 19020098 -102237432 + B3A SINE B2 172 190 -8 4 730 654 227 76 70 chr12 19020148 19020333 -102237197 - B3 SINE B2 -23 193 8 4 730 800 189 0 20 chr12 19020431 19020577 -102236953 - B1_Mus1 SINE Alu 0 148 6 5 730 217 229 0 0 chr12 19020630 19020691 -102236839 + T-rich Low_complexity Low_complexity 1 61 0 5 730 969 223 39 19 chr12 19020971 19021177 -102236353 - MTD LTR MaLR -14 405 196 5 730 714 194 18 120 chr12 19021171 19021206 -102236324 - B2_Mm2 SINE B2 0 195 168 5 730 324 0 0 0 chr12 19021206 19021242 -102236288 + (TATG)n Simple_repeat Simple_repeat 2 37 0 5 730 784 194 18 120 chr12 19021242 19021423 -102236107 - B3 SINE B2 -42 174 1 5 730 856 184 44 26 chr12 19021423 19021618 -102235912 - MTD LTR MaLR -209 212 1 5 730 182 288 16 48 chr12 19021640 19021702 -102235828 - MIR SINE MIR -57 151 92 5 730 513 265 146 7 chr12 19022255 19022392 -102235138 + RSINE1 SINE B4 6 161 -4 5 730 475 242 103 164 chr12 19022542 19022938 -102234592 - RMER10A LTR ERVL 0 442 71 5 730 329 267 70 56 chr12 19023481 19023624 -102233906 + MLT1N2 LTR MaLR 413 557 -5 5 730 206 273 55 0 chr12 19023998 19024053 -102233477 - MIRc SINE MIR -117 151 94 5 730 932 291 14 4 chr12 19024495 19024754 -102232776 - MTEa LTR MaLR -122 257 1 6 730 268 254 104 0 chr12 19024890 19024957 -102232573 + ID_B1 SINE B4 52 125 -99 6 730 267 280 35 78 chr12 19024917 19024970 -102232560 + PB1D10 SINE Alu 5 51 -66 6 730 1012 122 14 0 chr12 19024970 19025117 -102232413 - B1_Mur4 SINE Alu -1 149 1 6 730 267 280 35 78 chr12 19025117 19025179 -102232351 + PB1D10 SINE Alu 52 115 -2 6 730 22 0 0 0 chr12 19025271 19025293 -102232237 + AT_rich Low_complexity Low_complexity 1 22 0 6 730 267 307 45 0 chr12 19025305 19025393 -102232137 - MLT1C LTR MaLR -43 424 333 6 730 403 127 68 40 chr12 19025397 19025471 -102232059 + MTA_Mm LTR MaLR 2 77 -319 6 730 2154 208 127 49 chr12 19025471 19026296 -102231234 - RLTR13D6 LTR ERVK 0 893 1 6 730 2333 97 9 6 chr12 19026296 19026621 -102230909 + MTB LTR MaLR 75 400 0 6 730 242 209 91 23 chr12 19026646 19026734 -102230796 - MLT1C LTR MaLR -137 253 160 6 730 570 253 62 22 chr12 19026759 19026937 -102230593 + B4A SINE B4 3 187 -105 6 730 234 233 0 0 chr12 19027093 19027136 -102230394 - MLT1C LTR MaLR -296 94 52 6 730 2004 130 36 3 chr12 19027136 19027437 -102230093 + RLTR10E LTR ERVK 1 311 0 7 730 834 123 0 0 chr12 19027779 19027909 -102229621 + (TTTC)n Simple_repeat Simple_repeat 1 130 0 7 730 1142 90 0 11 chr12 19027911 19028090 -102229440 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 7 730 313 270 40 0 chr12 19028138 19028212 -102229318 - ID4_ SINE ID -6 77 1 7 730 722 178 0 17 chr12 19028225 19028345 -102229185 - B1_Mur1 SINE Alu 0 149 32 7 730 903 144 7 0 chr12 19028364 19028510 -102229020 + B1_Mus1 SINE Alu 1 147 -1 7 730 543 288 45 6 chr12 19028635 19028792 -102228738 - RSINE1 SINE B4 0 165 3 7 730 474 250 69 19 chr12 19028936 19029095 -102228435 - MTD-int LTR MaLR -1091 167 1 7 730 984 225 228 23 chr12 19029101 19029447 -102228083 - MTD LTR MaLR 0 419 3 7 730 4509 216 50 58 chr12 19029505 19030672 -102226858 + MTD-int LTR MaLR 96 1252 -6 7 730 1276 214 72 4 chr12 19030685 19030962 -102226568 + MTD LTR MaLR 25 320 -99 7 730 1122 109 86 0 chr12 19030970 19031127 -102226403 + B2_Mm1a SINE B2 1 165 -28 7 730 420 37 0 0 chr12 19031127 19031181 -102226349 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 8 730 1122 109 86 0 chr12 19031181 19031198 -102226332 + B2_Mm1a SINE B2 166 189 -4 7 730 446 157 48 0 chr12 19031207 19031290 -102226240 + MTD LTR MaLR 333 419 0 7 730 817 213 18 0 chr12 19031821 19031985 -102225545 - B3 SINE B2 -11 205 39 8 730 183 80 0 0 chr12 19031986 19032011 -102225519 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 8 730 189 224 0 0 chr12 19032329 19032387 -102225143 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 8 730 732 170 38 129 chr12 19032448 19032524 -102225006 + URR1B DNA MER1_type 5 111 -114 8 730 1077 102 0 0 chr12 19032524 19032671 -102224859 + B1_Mm SINE Alu 1 147 0 8 730 732 140 6 169 chr12 19032671 19032795 -102224735 + URR1B DNA MER1_type 112 210 -15 8 730 321 282 12 12 chr12 19033259 19033345 -102224185 - PB1D10 SINE Alu -13 104 19 8 730 461 276 20 46 chr12 19033562 19033714 -102223816 - B1F SINE Alu 0 149 2 8 730 1270 195 170 16 chr12 19033741 19034064 -102223466 - ORR1D1 LTR MaLR -1 373 1 8 730 3572 13 5 0 chr12 19034275 19034669 -102222861 + MTA_Mm LTR MaLR 1 396 0 8 730 9082 38 7 2 chr12 19034669 19035761 -102221769 + MTA_Mm-int LTR MaLR 1 1098 0 8 730 3572 13 5 0 chr12 19035761 19036155 -102221375 + MTA_Mm LTR MaLR 1 396 0 8 730 255 306 53 26 chr12 19036290 19036404 -102221126 - L2c LINE L2 -53 3334 3218 9 730 2009 165 59 21 chr12 19036950 19037322 -102220208 - MTC LTR MaLR -33 388 3 9 730 1102 81 0 39 chr12 19037845 19037999 -102219531 - B1_Mus1 SINE Alu 0 148 1 9 730 188 245 38 0 chr12 19038702 19038755 -102218775 - MIRc SINE MIR -129 139 85 9 730 424 48 16 16 chr12 19038912 19038976 -102218554 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 730 676 276 92 42 chr12 19039005 19039243 -102218287 - B4A SINE B4 -38 254 5 9 730 524 268 81 0 chr12 19039371 19039494 -102218036 + ETnERV2-int LTR ERVK 7070 7202 -204 9 730 276 194 153 0 chr12 19040080 19040152 -102217378 - MER5A1 DNA MER1_type -71 95 13 9 730 1140 107 6 0 chr12 19040647 19040806 -102216724 + B2_Mm1a SINE B2 1 160 -33 9 730 396 0 0 0 chr12 19040806 19040850 -102216680 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 9 730 519 189 32 8 chr12 19041092 19041215 -102216315 - Lx3B LINE L1 0 6973 6848 1 730 1048 83 0 0 chr12 19041740 19041873 -102215657 + B1_Mm SINE Alu 3 135 -12 1 730 1062 86 0 0 chr12 19041873 19042024 -102215506 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 1 730 349 265 92 35 chr12 19042659 19042800 -102214730 - B1F SINE Alu 0 149 1 1 730 572 316 44 0 chr12 19043168 19043374 -102214156 - MER63C DNA AcHobo -5 925 711 1 730 248 290 52 41 chr12 19043432 19043529 -102214001 + MER63D DNA AcHobo 537 634 -427 1 730 958 312 122 17 chr12 19043464 19043881 -102213649 - MER63C DNA AcHobo -237 693 233 1 730 744 186 21 7 chr12 19044143 19044284 -102213246 + B1_Mur1 SINE Alu 1 143 -6 1 730 668 222 74 115 chr12 19044466 19044631 -102212899 + B3 SINE B2 45 215 -1 1 730 198 224 0 0 chr12 19044640 19044689 -102212841 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 730 462 299 48 7 chr12 19044698 19044776 -102212754 + B3 SINE B2 2 81 -135 1 730 738 73 191 24 chr12 19044776 19044902 -102212628 + B1_Mus1 SINE Alu 2 148 0 1 730 462 299 48 7 chr12 19044902 19044968 -102212562 + B3 SINE B2 82 151 -65 1 730 503 216 18 18 chr12 19045855 19045968 -102211562 - PB1D9 SINE Alu -6 114 2 1 730 988 91 8 8 chr12 19046018 19046151 -102211379 + B1_Mus2 SINE Alu 2 134 -13 1 730 189 0 0 0 chr12 19046151 19046172 -102211358 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1 730 1424 219 106 8 chr12 19046567 19046945 -102210585 - MTD LTR MaLR 0 419 5 1 730 510 329 61 4 chr12 19047173 19047402 -102210128 - MER46C DNA MER2_type -1 337 96 1 730 829 184 0 14 chr12 19047425 19047568 -102209962 - B1_Mur3 SINE Alu -7 142 2 1 730 358 215 38 0 chr12 19047686 19047765 -102209765 + ID2 SINE ID 2 83 0 1 730 690 160 0 0 chr12 19047822 19047991 -102209539 + (TG)n Simple_repeat Simple_repeat 2 170 0 1 730 635 183 0 4 chr12 19048050 19048289 -102209241 + (TG)n Simple_repeat Simple_repeat 1 237 0 1 730 22 0 0 0 chr12 19049308 19049330 -102208200 + AT_rich Low_complexity Low_complexity 1 22 0 1 730 21 0 0 0 chr12 19050196 19050217 -102207313 + GC_rich Low_complexity Low_complexity 1 21 0 1 730 2989 72 5 35 chr12 19052528 19052930 -102204600 + RLTR10 LTR ERVK 1 390 0 1 730 1713 113 39 4 chr12 19052930 19053188 -102204342 + MMERVK10C-int LTR ERVK 1 267 -7314 1 730 189 269 0 0 chr12 19053226 19053293 -102204237 + A-rich Low_complexity Low_complexity 1 67 0 1 730 771 51 68 0 chr12 19053293 19053410 -102204120 + RLTR10A LTR ERVK 285 409 -2 1 730 4293 48 10 0 chr12 19053411 19054024 -102203506 + RLTR10-int LTR ERVK 301 992 -995 1 730 577 305 34 34 chr12 19054080 19054406 -102203124 + RLTR10-int LTR ERVK 738 1063 -5479 1 730 941 81 0 0 chr12 19054554 19054677 -102202853 + RLTR10-int LTR ERVK 990 1112 -875 1 730 1322 7 0 0 chr12 19054678 19054824 -102202706 + B1_Mm SINE Alu 2 147 0 1 730 198 0 0 0 chr12 19054824 19054846 -102202684 + (A)n Simple_repeat Simple_repeat 1 22 0 1 730 2169 43 0 4 chr12 19054846 19055100 -102202430 + RLTR10-int LTR ERVK 1098 1350 -637 1 730 309 288 56 66 chr12 19055226 19055423 -102202107 + RLTR46 LTR ERVK 126 320 0 1 730 280 188 59 59 chr12 19055706 19055774 -102201756 + IAPEY3-int LTR ERVK 379 446 -6375 1 730 40643 186 21 5 chr12 19055759 19063072 -102194458 + IAPEY3-int LTR ERVK 246 7680 0 1 730 307 290 61 71 chr12 19063201 19063398 -102194132 + RLTR46 LTR ERVK 126 320 0 1 730 5445 47 5 2 chr12 19063398 19064041 -102193489 + RLTR10-int LTR ERVK 1342 1986 -1 1 730 3082 62 10 0 chr12 19064041 19064427 -102193103 + RLTR10 LTR ERVK 1 390 0 1 730 182 260 162 14 chr12 19064992 19065066 -102192464 - MIRm SINE MIR -115 161 77 1 730 447 87 0 0 chr12 19065464 19065533 -102191997 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 730 290 268 0 40 chr12 19065594 19065695 -102191835 - B4A SINE B4 -195 97 1 1 730 295 378 15 30 chr12 19067049 19067180 -102190350 - MER3 DNA MER1_type -78 131 3 1 730 315 331 98 13 chr12 19067190 19067343 -102190187 + MER5A1 DNA MER1_type 1 166 0 1 730 228 229 22 67 chr12 19067417 19067506 -102190024 - MER5B DNA MER1_type -62 116 32 1 730 466 274 142 6 chr12 19067926 19068095 -102189435 - B3A SINE B2 -4 194 3 1 730 193 102 0 58 chr12 19068366 19068418 -102189112 + T-rich Low_complexity Low_complexity 6 54 0 1 730 976 120 0 7 chr12 19068427 19068570 -102188960 - B1_Mm SINE Alu -5 142 1 1 730 868 191 173 0 chr12 19068622 19068847 -102188683 + Lx9 LINE L1 7381 7644 0 1 730 824 270 27 36 chr12 19069167 19069390 -102188140 - ID_B1 SINE B4 0 224 4 1 730 282 273 202 8 chr12 19069705 19069834 -102187696 + Lx8 LINE L1 6978 7131 -342 1 730 329 198 12 0 chr12 19069903 19069984 -102187546 + GA-rich Low_complexity Low_complexity 3 84 0 1 730 233 271 121 16 chr12 19069992 19070116 -102187414 + Lx8 LINE L1 7335 7471 -2 1 730 241 143 45 60 chr12 19070184 19070251 -102187279 + (CCCTAA)n Simple_repeat Simple_repeat 5 70 0 1 730 350 315 43 106 chr12 19070301 19070700 -102186830 + MT2A LTR ERVL 83 601 0 1 730 5060 100 81 35 chr12 19071111 19071611 -102185919 - RMER17D LTR ERVK -2 887 398 1 730 563 40 14 0 chr12 19071611 19071685 -102185845 + (GGAGA)n Simple_repeat Simple_repeat 1 75 0 1 730 5060 100 81 35 chr12 19071685 19072032 -102185498 - RMER17D LTR ERVK -492 397 1 1 730 434 269 74 38 chr12 19072589 19073046 -102184484 - L1_Mur3 LINE L1 -4044 1836 1314 1 730 386 280 51 51 chr12 19073343 19073580 -102183950 - L1_Mur3 LINE L1 -6622 1106 870 1 730 2914 56 11 0 chr12 19074808 19075185 -102182345 + MTA_Mm LTR MaLR 16 396 0 1 730 615 52 0 0 chr12 19075185 19075259 -102182271 - RLTR9D LTR ERVK -329 74 1 1 730 279 354 68 23 chr12 19075315 19075448 -102182082 + MTD LTR MaLR 265 403 -16 1 730 433 327 78 32 chr12 19075528 19075803 -102181727 + ORR1C2-int LTR MaLR 54 361 -1219 1 730 6059 234 13 9 chr12 19075844 19077253 -102180277 - Lx4B LINE L1 -4 7054 5641 1 730 1522 339 31 42 chr12 19077268 19077977 -102179553 + ORR1C2-int LTR MaLR 562 1262 -108 1 730 273 250 25 41 chr12 19078080 19078201 -102179329 - Lx4B LINE L1 -4 7054 6936 1 730 342 332 81 52 chr12 19078317 19078527 -102179003 - B3 SINE B2 0 216 1 1 730 8247 188 103 27 chr12 19078619 19078768 -102178762 + MurSatRep1 Unknown Unknown 2 175 -1962 1 730 319 314 65 0 chr12 19078768 19078892 -102178638 - B1_Mur2 SINE Alu -17 132 1 1 730 8247 188 103 27 chr12 19078892 19079738 -102177792 + MurSatRep1 Unknown Unknown 176 1125 -1012 1 730 1238 112 11 11 chr12 19079738 19079928 -102177602 - B2_Mm1a SINE B2 -2 191 2 1 730 8247 188 103 27 chr12 19079928 19080915 -102176615 + MurSatRep1 Unknown Unknown 1126 2134 -3 1 730 258 271 78 74 chr12 19080946 19081177 -102176353 + MurSatRep1 Unknown Unknown 1822 2053 -84 1 730 493 243 22 22 chr12 19081112 19081251 -102176279 + MMSAT4 Satellite Satellite 30 168 0 1 730 484 307 77 50 chr12 19081240 19081755 -102175775 + MurSatRep1 Unknown Unknown 1691 2137 0 1 730 417 286 7 7 chr12 19081815 19082038 -102175492 + MMSAT4 Satellite Satellite 1 223 0 1 730 416 297 81 40 chr12 19081992 19082530 -102175000 + MurSatRep1 Unknown Unknown 1747 2137 0 1 730 356 256 0 0 chr12 19082741 19082819 -102174711 + ORR1C2 LTR MaLR 293 370 -14 1 730 887 121 15 0 chr12 19083116 19083248 -102174282 + B1_Mus1 SINE Alu 2 135 -13 1 730 2082 236 74 14 chr12 19083527 19084444 -102173086 - L1_Mur3 LINE L1 -3798 2082 1088 1 730 405 271 29 35 chr12 19084429 19084601 -102172929 - L1_Mur3 LINE L1 -6510 1218 1048 1 730 468 0 0 0 chr12 19085148 19085200 -102172330 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 730 342 0 0 0 chr12 19085201 19085239 -102172291 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 730 21 0 0 0 chr12 19085261 19085282 -102172248 + AT_rich Low_complexity Low_complexity 1 21 0 1 730 634 235 46 29 chr12 19085292 19085467 -102172063 - Lx2B LINE L1 -198 6802 6625 1 730 345 209 20 0 chr12 19085512 19085665 -102171865 + (TCTA)n Simple_repeat Simple_repeat 3 158 0 1 730 318 173 25 0 chr12 19085666 19085747 -102171783 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 730 226 218 12 25 chr12 19085745 19085825 -102171705 + (TTA)n Simple_repeat Simple_repeat 2 80 0 1 730 465 194 29 6 chr12 19086082 19086253 -102171277 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 730 480 185 31 6 chr12 19086265 19086428 -102171102 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 730 240 278 14 14 chr12 19087144 19087217 -102170313 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 730 264 219 61 30 chr12 19090658 19090724 -102166806 + PB1D10 SINE Alu 30 97 -20 1 730 353 226 23 156 chr12 19090680 19090730 -102166800 + MT2B LTR ERVL 129 155 -446 1 730 810 171 71 0 chr12 19090730 19090870 -102166660 + B1_Mur4 SINE Alu 1 150 0 1 730 898 219 25 30 chr12 19090939 19091141 -102166389 + ID_B1 SINE B4 21 221 -3 1 730 615 308 10 67 chr12 19092038 19092247 -102165283 + B4A SINE B4 24 220 -72 1 730 326 303 87 38 chr12 19092264 19092449 -102165081 + B3A SINE B2 2 195 -3 1 730 965 139 0 0 chr12 19092470 19092607 -102164923 + B1_Mur4 SINE Alu 1 137 -13 1 730 245 311 118 30 chr12 19092619 19092881 -102164649 + RMER12 LTR ERVK 704 988 -334 1 730 305 338 0 0 chr12 19092918 19092998 -102164532 - RSINE1 SINE B4 -85 80 1 1 730 355 285 53 8 chr12 19093465 19093596 -102163934 - MER33 DNA MER1_type 0 324 188 1 730 997 195 33 0 chr12 19093648 19093863 -102163667 - URR1B DNA MER1_type -3 222 1 1 730 180 231 0 0 chr12 19094076 19094154 -102163376 + GA-rich Low_complexity Low_complexity 1 78 0 1 730 230 293 161 54 chr12 19095923 19096053 -102161477 - MLT1J1 LTR MaLR -18 426 283 1 730 477 0 0 0 chr12 19096484 19096537 -102160993 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 730 1059 64 21 8 chr12 19097523 19097764 -102159766 + (TTCC)n Simple_repeat Simple_repeat 1 244 0 1 730 269 26 26 0 chr12 19098475 19098513 -102159017 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 730 445 229 0 9 chr12 19098513 19098619 -102158911 - PB1D9 SINE Alu -6 114 10 1 730 279 262 194 89 chr12 19098619 19098693 -102158837 - ID_B1 SINE B4 -6 218 20 1 730 662 238 32 47 chr12 19098805 19098995 -102158535 + B3 SINE B2 28 214 -2 1 730 849 94 17 0 chr12 19099068 19099185 -102158345 + B1_Mm SINE Alu 22 140 -7 1 730 198 0 0 0 chr12 19099189 19099211 -102158319 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 730 612 204 76 19 chr12 19099250 19099407 -102158123 + ID_B1 SINE B4 82 248 -44 1 730 251 67 44 0 chr12 19099583 19099628 -102157902 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 1 730 573 203 47 31 chr12 19099677 19099804 -102157726 - B1_Mur3 SINE Alu -12 137 9 1 730 712 216 8 0 chr12 19099836 19099961 -102157569 - ID_B1 SINE B4 -7 217 92 1 730 2212 39 0 50 chr12 19100828 19101127 -102156403 - RLTR10B LTR ERVK 0 292 9 2 730 230 114 0 0 chr12 19101128 19101163 -102156367 - RLTR10B LTR ERVK -257 35 1 2 730 1349 147 9 18 chr12 19101799 19102027 -102155503 + URR1A DNA MER1_type 1 226 0 2 730 276 30 0 0 chr12 19102797 19102830 -102154700 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 730 729 246 50 25 chr12 19102884 19103084 -102154446 + B4A SINE B4 2 206 -86 2 730 188 333 75 11 chr12 19103171 19103265 -102154265 - L4 LINE RTE -434 1595 1496 2 730 674 254 0 0 chr12 19103311 19103437 -102154093 + RSINE1 SINE B4 3 128 -37 2 730 211 269 0 0 chr12 19104102 19104154 -102153376 + G-rich Low_complexity Low_complexity 3 54 0 2 730 2020 132 10 10 chr12 19104373 19104687 -102152843 - MTC LTR MaLR 0 421 108 2 730 634 169 84 49 chr12 19104690 19104833 -102152697 + B1_Mur3 SINE Alu 2 149 0 2 730 182 156 22 0 chr12 19104848 19104893 -102152637 + GA-rich Low_complexity Low_complexity 1 46 0 2 730 265 279 56 43 chr12 19106182 19106236 -102151294 + RMER17A LTR ERVK 345 475 -276 2 730 637 83 0 0 chr12 19106245 19106329 -102151201 - B2_Mm2 SINE B2 -109 86 3 2 730 265 279 56 43 chr12 19106332 19106343 -102151187 + RMER17A LTR ERVK 476 507 -244 2 730 358 284 0 0 chr12 19106402 19106490 -102151040 + PB1D10 SINE Alu 30 117 0 2 730 418 212 12 0 chr12 19106495 19106575 -102150955 + RSINE1 SINE B4 53 133 -32 2 730 455 239 51 51 chr12 19106560 19106697 -102150833 + B1F1 SINE Alu 13 149 0 2 730 633 239 16 42 chr12 19106728 19106919 -102150611 + B3 SINE B2 15 195 0 2 730 737 247 24 12 chr12 19107486 19107650 -102149880 - B3A SINE B2 -30 168 3 2 730 247 261 103 17 chr12 19107730 19107847 -102149683 + L2c LINE L2 3038 3164 -223 2 730 317 303 28 0 chr12 19108043 19108152 -102149378 + PB1D7 SINE Alu 3 114 -6 2 730 303 325 8 41 chr12 19108159 19108281 -102149249 - MIRb SINE MIR -149 119 2 2 730 238 304 7 61 chr12 19109091 19109238 -102148292 + (CAGGA)n Simple_repeat Simple_repeat 2 140 0 2 730 228 310 48 72 chr12 19109409 19109502 -102148028 + L1MD2 LINE L1 6084 6169 -190 2 730 293 0 27 0 chr12 19109502 19109539 -102147991 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 730 228 310 48 72 chr12 19109539 19109612 -102147918 + L1MD2 LINE L1 6170 6245 -114 2 730 675 288 43 32 chr12 19109718 19109998 -102147532 + B4A SINE B4 2 284 -8 2 730 301 116 0 0 chr12 19110290 19110333 -102147197 - URR1B DNA MER1_type 0 225 183 2 730 3370 64 28 7 chr12 19110605 19111032 -102146498 - RLTR10C LTR ERVK 0 436 1 2 730 41404 48 11 12 chr12 19111032 19114181 -102143349 - MMERVK10C-int LTR ERVK 0 7581 4454 2 730 4600 6 0 0 chr12 19114181 19114674 -102142856 - MT2_Mm LTR ERVL 0 493 1 2 730 41404 48 11 12 chr12 19114674 19116562 -102140968 - MMERVK10C-int LTR ERVK -3128 4453 2552 2 730 408 117 6 58 chr12 19116568 19116696 -102140834 - MMERVK10C-int LTR ERVK -5634 1947 1721 2 730 835 192 230 46 chr12 19116698 19117067 -102140463 - MMERVK10C-int LTR ERVK -4795 611 312 2 730 1050 161 4 86 chr12 19117155 19117399 -102140131 - MMERVK10C-int LTR ERVK -6629 952 729 2 730 1553 92 147 158 chr12 19117397 19117744 -102139786 - MMERVK10C-int LTR ERVK -7238 343 1 2 730 3410 59 28 12 chr12 19117744 19118173 -102139357 - RLTR10C LTR ERVK 0 436 1 2 730 376 153 0 23 chr12 19118475 19118562 -102138968 + G-rich Low_complexity Low_complexity 2 86 0 2 730 764 171 50 0 chr12 19118902 19119042 -102138488 + B1_Mur4 SINE Alu 3 149 -1 2 730 431 92 11 33 chr12 19119042 19119132 -102138398 + (TAAA)n Simple_repeat Simple_repeat 1 88 0 2 730 766 229 88 5 chr12 19119607 19119800 -102137730 + B3 SINE B2 3 211 -5 2 730 397 207 142 33 chr12 19119825 19119945 -102137585 + B1_Mus2 SINE Alu 1 133 -14 2 730 1041 81 0 0 chr12 19119953 19120102 -102137428 + (GGGAGA)n Simple_repeat Simple_repeat 3 151 0 2 730 745 258 14 47 chr12 19122207 19122419 -102135111 + ID_B1 SINE B4 2 206 -18 2 730 222 37 0 0 chr12 19122427 19122454 -102135076 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 730 989 116 0 0 chr12 19122477 19122615 -102134915 + B1_Mus1 SINE Alu 1 138 -10 2 730 483 18 0 0 chr12 19122696 19122752 -102134778 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 730 446 335 191 8 chr12 19122754 19123010 -102134520 - L1MD2 LINE L1 -460 5899 5597 2 730 3177 34 110 169 chr12 19123064 19123707 -102133823 + RLTR6_Mm LTR ERV1 1 605 -49 2 730 2684 48 4 0 chr12 19123707 19124441 -102133089 + MMVL30-int LTR ERV1 1 747 -2951 2 730 5763 63 3 6 chr12 19124536 19125254 -102132276 + MMVL30-int LTR ERV1 738 1453 -2245 2 730 18649 60 25 18 chr12 19125341 19127788 -102129742 + MMVL30-int LTR ERV1 960 3698 0 2 730 3062 33 114 170 chr12 19127788 19128411 -102129119 + RLTR6_Mm LTR ERV1 1 588 -66 2 730 363 279 180 0 chr12 19128408 19128519 -102129011 - RSINE1 SINE B4 -31 134 4 2 730 4096 149 60 8 chr12 19128526 19128860 -102128670 + RMER17D2 LTR ERVK 1 366 -443 2 730 750 66 25 8 chr12 19128860 19128982 -102128548 + (TCTCC)n Simple_repeat Simple_repeat 3 126 0 2 730 4096 149 60 8 chr12 19128982 19129254 -102128276 + RMER17D2 LTR ERVK 367 640 -169 2 730 261 0 0 0 chr12 19129254 19129283 -102128247 + (CCA)n Simple_repeat Simple_repeat 2 30 0 2 730 4096 149 60 8 chr12 19129283 19129444 -102128086 + RMER17D2 LTR ERVK 641 807 -2 2 730 1205 173 179 145 chr12 19129545 19129992 -102127538 - MT2A LTR ERVL -71 462 1 2 730 525 268 14 0 chr12 19129994 19130136 -102127394 - L1MD2 LINE L1 -677 5565 5422 2 730 436 256 23 0 chr12 19130164 19130293 -102127237 + B3A SINE B2 39 170 -28 2 730 582 15 0 0 chr12 19130296 19130363 -102127167 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 730 577 220 81 62 chr12 19130459 19130619 -102126911 - B3 SINE B2 -46 170 8 2 730 785 137 0 67 chr12 19130719 19130868 -102126662 - B1_Mus1 SINE Alu 0 148 10 2 730 862 233 39 19 chr12 19131250 19131456 -102126074 - MTD LTR MaLR -14 405 196 2 730 559 222 19 108 chr12 19131445 19131478 -102126052 - B2_Mm2 SINE B2 -2 193 164 2 730 351 0 0 0 chr12 19131478 19131517 -102126013 + (TATG)n Simple_repeat Simple_repeat 3 41 0 2 730 659 222 19 108 chr12 19131517 19131695 -102125835 - B3 SINE B2 -42 174 1 2 730 728 211 38 32 chr12 19131695 19131883 -102125647 - MTD LTR MaLR -204 196 10 2 730 492 246 139 14 chr12 19132524 19132668 -102124862 + RSINE1 SINE B4 2 163 -2 2 730 210 37 0 0 chr12 19132668 19132695 -102124835 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 730 364 278 202 50 chr12 19132816 19132947 -102124583 - RMER10A LTR ERVL 0 442 301 2 730 801 66 25 0 chr12 19132947 19133068 -102124462 + (GA)n Simple_repeat Simple_repeat 1 124 0 2 730 364 278 202 50 chr12 19133068 19133258 -102124272 - RMER10A LTR ERVL -142 300 72 2 730 341 293 35 21 chr12 19133982 19134125 -102123405 + MLT1N2 LTR MaLR 413 557 -5 2 730 192 97 0 0 chr12 19134144 19134175 -102123355 + (A)n Simple_repeat Simple_repeat 1 31 0 2 730 205 286 54 0 chr12 19134513 19134569 -102122961 - MIRm SINE MIR -121 155 97 2 730 848 299 13 0 chr12 19135045 19135269 -102122261 - MTEa LTR MaLR -152 227 1 2 730 264 221 103 0 chr12 19135404 19135431 -102122099 + ID SINE ID 51 84 -140 2 730 257 266 34 76 chr12 19135431 19135485 -102122045 + PB1D10 SINE Alu 4 51 -66 2 730 802 178 7 20 chr12 19135485 19135634 -102121896 - B1_Mus1 SINE Alu -1 147 1 2 730 257 266 34 76 chr12 19135634 19135697 -102121833 + PB1D10 SINE Alu 52 116 -1 2 730 230 292 47 62 chr12 19135774 19135902 -102121628 - MLT1C LTR MaLR -9 458 333 2 730 372 137 81 14 chr12 19135906 19135980 -102121550 + MTB_Mm LTR MaLR 2 80 -327 2 91 1780 216 114 46 chr12 19135980 19136793 -102120737 - RLTR13D6 LTR ERVK 0 893 10 2 731 2103 96 9 6 chr12 19136799 19137125 -102120405 + MTB LTR MaLR 74 400 0 2 731 479 259 68 6 chr12 19137264 19137427 -102120103 + B4A SINE B4 3 175 -117 2 731 235 241 0 0 chr12 19137586 19137640 -102119890 - MLT1C LTR MaLR -362 105 52 2 731 2170 93 36 3 chr12 19137640 19137941 -102119589 + RLTR10E LTR ERVK 1 311 0 2 731 11449 129 34 32 chr12 19137941 19139877 -102117653 + MMERVK10C-int LTR ERVK 1 1939 -5642 2 731 215 176 0 56 chr12 19139890 19139962 -102117568 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 2 731 225 31 14 111 chr12 19139964 19140036 -102117494 + A-rich Low_complexity Low_complexity 5 69 0 2 731 21672 90 4 13 chr12 19140052 19143284 -102114246 + MMERVK10C-int LTR ERVK 4453 7680 0 2 731 2120 116 33 3 chr12 19143284 19143586 -102113944 + RLTR10E LTR ERVK 1 311 0 2 731 827 136 0 7 chr12 19143928 19144076 -102113454 + (TTTC)n Simple_repeat Simple_repeat 4 150 0 2 731 1311 34 6 22 chr12 19144093 19144276 -102113254 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 731 262 286 60 0 chr12 19144307 19144325 -102113205 - ID_B1 SINE B4 -127 97 9 2 731 291 227 45 0 chr12 19144325 19144391 -102113139 - ID4_ SINE ID -6 77 9 2 731 768 197 0 14 chr12 19144412 19144551 -102112979 - B1_Mur1 SINE Alu 0 149 13 2 731 860 151 7 0 chr12 19144610 19144756 -102112774 + B1_Mus1 SINE Alu 1 147 -1 2 731 555 289 40 7 chr12 19144878 19145028 -102112502 - RSINE1 SINE B4 0 165 11 2 731 411 236 51 51 chr12 19145174 19145330 -102112200 - MTD-int LTR MaLR -1102 156 1 2 731 664 232 186 8 chr12 19145336 19145675 -102111855 - MTD LTR MaLR 0 419 1 2 731 2658 232 33 126 chr12 19145734 19146522 -102111008 + MTC-int LTR MaLR 96 848 -410 2 731 1002 92 14 21 chr12 19146522 19146667 -102110863 + B1_Mm SINE Alu 4 147 0 2 731 2658 232 33 126 chr12 19146667 19146850 -102110680 + MTC-int LTR MaLR 849 977 -281 2 731 342 247 31 10 chr12 19146852 19146950 -102110580 + MTD LTR MaLR 214 313 -106 2 731 2712 126 35 38 chr12 19147228 19147707 -102109823 - RLTR45 LTR ERVK 0 482 5 2 731 7526 153 13 11 chr12 19147711 19149112 -102108418 - RLTR45-int LTR ERVK -456 7761 6331 2 731 3564 72 8 41 chr12 19149206 19149698 -102107832 - RLTR45-int LTR ERVK -5601 1643 1168 2 731 1723 82 74 4 chr12 19149871 19150129 -102107401 - RLTR45-int LTR ERVK -6067 1177 902 2 731 1849 55 0 0 chr12 19150239 19150458 -102107072 - RLTR45-int LTR ERVK -6334 910 692 2 731 1129 83 17 40 chr12 19150818 19150994 -102106536 - RLTR45-int LTR ERVK -6552 692 521 2 731 3698 128 26 21 chr12 19151722 19152290 -102105240 - RLTR45-int LTR ERVK -6673 571 1 2 731 2677 144 18 41 chr12 19152290 19152783 -102104747 - RLTR45 LTR ERVK 0 482 1 2 731 1108 69 7 0 chr12 19152949 19153093 -102104437 + B1_Mm SINE Alu 1 145 -2 2 731 478 159 28 0 chr12 19153112 19153219 -102104311 + URR1B DNA MER1_type 101 210 -15 2 731 292 286 0 125 chr12 19153650 19153770 -102103760 - PB1D10 SINE Alu 0 117 13 2 731 516 274 13 40 chr12 19153969 19154121 -102103409 - B1F SINE Alu 0 149 2 2 731 1215 202 176 6 chr12 19154148 19154467 -102103063 - ORR1D1 LTR MaLR -1 373 1 2 731 216 215 92 0 chr12 19154819 19154884 -102102646 - L2c LINE L2 -53 3334 3264 2 731 1901 146 67 27 chr12 19155482 19155855 -102101675 - MTC LTR MaLR -33 388 1 2 731 738 60 0 0 chr12 19155923 19156023 -102101507 + (TGG)n Simple_repeat Simple_repeat 1 100 0 2 731 194 0 39 0 chr12 19156470 19156496 -102101034 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 731 1116 68 0 39 chr12 19156496 19156649 -102100881 - B1_Mus1 SINE Alu -1 147 1 2 731 496 192 205 112 chr12 19157462 19157667 -102099863 + URR1B DNA MER1_type 2 225 0 2 731 1018 230 9 0 chr12 19157705 19157918 -102099612 - B3 SINE B2 0 216 2 2 731 1271 292 8 30 chr12 19161171 19161204 -102096326 + ORR1D2 LTR MaLR 1 33 -337 2 731 1134 131 91 10 chr12 19161204 19161413 -102096117 - URR1A DNA MER1_type 0 226 1 2 731 1271 292 8 30 chr12 19161413 19161749 -102095781 + ORR1D2 LTR MaLR 34 362 -8 2 731 226 345 35 0 chr12 19161931 19162047 -102095483 - RMER15 LTR ERVL -16 559 440 2 731 1637 234 41 3 chr12 19162047 19162436 -102095094 + MTD LTR MaLR 2 405 -14 3 731 505 284 29 29 chr12 19163491 19163665 -102093865 - ID_B1 SINE B4 0 224 51 3 731 331 255 45 54 chr12 19164351 19164463 -102093067 + B3 SINE B2 8 118 -98 3 731 732 23 0 0 chr12 19164494 19164580 -102092950 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 731 517 216 10 10 chr12 19164609 19164712 -102092818 + B1_Mur2 SINE Alu 7 109 -40 3 731 527 254 17 0 chr12 19164918 19165036 -102092494 + RSINE1 SINE B4 2 121 -44 3 731 1341 88 16 0 chr12 19165037 19165229 -102092301 + B2_Mm2 SINE B2 1 195 0 3 731 31 26 0 0 chr12 19165320 19165358 -102092172 + AT_rich Low_complexity Low_complexity 1 38 0 3 731 198 150 0 0 chr12 19165390 19165430 -102092100 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 3 731 186 302 122 44 chr12 19165667 19165757 -102091773 - L2b LINE L2 -51 3324 3228 3 731 285 273 214 77 chr12 19165767 19166083 -102091447 - ORR1E LTR MaLR 0 359 1 3 731 986 163 0 0 chr12 19166318 19166465 -102091065 - B1_Mur1 SINE Alu 0 149 3 3 731 283 253 13 39 chr12 19166552 19166630 -102090900 + RSINE1 SINE B4 50 125 -40 3 731 1415 99 0 5 chr12 19166723 19166916 -102090614 + B2_Mm2 SINE B2 1 192 -3 3 731 2482 137 16 40 chr12 19167545 19167970 -102089560 - MTC LTR MaLR -6 415 1 3 731 530 294 71 0 chr12 19168988 19169114 -102088416 - RSINE1 SINE B4 -10 155 21 3 731 223 279 74 25 chr12 19169413 19169487 -102088043 + B4A SINE B4 3 80 -212 3 731 422 86 0 0 chr12 19169487 19169545 -102087985 + RMER6D LTR ERVK 1 58 -662 3 731 380 167 0 0 chr12 19169797 19169857 -102087673 + B3 SINE B2 70 129 -87 3 731 234 128 26 0 chr12 19170018 19170057 -102087473 + MLT1C LTR MaLR 149 188 -279 3 731 547 259 0 39 chr12 19170293 19170446 -102087084 - B1_Mm SINE Alu 0 147 1 3 731 474 49 0 0 chr12 19170640 19170701 -102086829 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3 731 1451 234 93 49 chr12 19170840 19171145 -102086385 + MTD LTR MaLR 13 351 -68 3 731 981 0 0 0 chr12 19171145 19171254 -102086276 + (TTCCC)n Simple_repeat Simple_repeat 5 113 0 3 731 1451 234 93 49 chr12 19171254 19171291 -102086239 + MTD LTR MaLR 352 374 -45 3 731 713 183 41 34 chr12 19171291 19171438 -102086092 - B1_Mus1 SINE Alu 0 148 1 3 731 1451 234 93 49 chr12 19171438 19171481 -102086049 + MTD LTR MaLR 375 416 -3 3 731 1130 107 6 0 chr12 19171648 19171807 -102085723 + B2_Mm1a SINE B2 1 160 -33 3 731 432 0 0 0 chr12 19171807 19171855 -102085675 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 3 731 512 197 32 8 chr12 19172097 19172220 -102085310 - Lx3B LINE L1 0 6973 6848 3 731 441 241 85 28 chr12 19173356 19173497 -102084033 - B1F SINE Alu 0 149 1 3 731 1203 311 82 113 chr12 19173865 19174580 -102082950 - MER63C DNA AcHobo -5 925 233 3 731 775 179 21 7 chr12 19174842 19174983 -102082547 + B1_Mur1 SINE Alu 1 143 -6 3 731 589 249 91 61 chr12 19175124 19175321 -102082209 + B3 SINE B2 10 212 -4 3 731 378 248 0 0 chr12 19175329 19175438 -102082092 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 731 530 227 0 30 chr12 19175454 19175554 -102081976 + B3 SINE B2 3 99 -117 3 731 818 129 0 120 chr12 19175554 19175721 -102081809 + B1_Mus1 SINE Alu 2 148 0 3 731 194 0 39 0 chr12 19175733 19175759 -102081771 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 731 389 159 16 0 chr12 19175776 19175839 -102081691 + B3 SINE B2 89 152 -64 3 731 495 250 9 0 chr12 19176729 19176841 -102080689 - PB1D9 SINE Alu -6 114 2 3 731 1092 89 0 20 chr12 19176891 19177040 -102080490 + B1_Mus2 SINE Alu 2 147 0 3 731 1495 219 83 8 chr12 19177455 19177841 -102079689 - MTD LTR MaLR 0 419 5 3 731 768 184 0 14 chr12 19178350 19178488 -102079042 - B1_Mur3 SINE Alu -9 140 5 3 731 330 259 12 0 chr12 19178611 19178692 -102078838 + ID2 SINE ID 2 83 0 3 731 330 171 0 103 chr12 19178714 19178792 -102078738 - HAL1-3A_ME LINE L1 -813 2045 1976 3 731 261 176 0 0 chr12 19178793 19178867 -102078663 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 731 342 96 0 19 chr12 19178869 19178922 -102078608 - HAL1-3A_ME LINE L1 -831 2027 1976 3 731 1023 138 0 0 chr12 19178922 19179192 -102078338 + (TG)n Simple_repeat Simple_repeat 1 270 0 3 731 936 126 0 0 chr12 19179209 19179568 -102077962 + (TG)n Simple_repeat Simple_repeat 1 359 0 3 731 989 111 0 9 chr12 19179593 19179830 -102077700 + (TG)n Simple_repeat Simple_repeat 1 234 0 3 731 3116 47 200 9 chr12 19180839 19181269 -102076261 - RLTR1B LTR ERV1 0 512 1 3 731 204 196 17 35 chr12 19181648 19181706 -102075824 + (CCCCG)n Simple_repeat Simple_repeat 5 61 0 3 731 203 277 95 35 chr12 19184498 19184626 -102072904 - MIRm SINE MIR -115 161 18 3 731 360 0 0 0 chr12 19184960 19185000 -102072530 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 731 282 303 7 147 chr12 19185019 19185162 -102072368 - B4A SINE B4 -41 124 1 3 731 288 378 15 30 chr12 19186689 19186820 -102070710 - MER3 DNA MER1_type -78 131 3 3 731 323 310 32 84 chr12 19186827 19186982 -102070548 + MER5A1 DNA MER1_type 19 165 -1 3 731 218 274 11 56 chr12 19187057 19187146 -102070384 - MER5B DNA MER1_type -62 116 32 3 731 665 321 96 29 chr12 19188174 19188550 -102068980 - Charlie4a DNA MER1_type -96 412 12 3 731 261 242 151 21 chr12 19188717 19188810 -102068720 - RLTR25A LTR ERVK -477 626 522 3 731 786 125 8 16 chr12 19188733 19188855 -102068675 - B1_Mus2 SINE Alu -26 121 1 3 731 467 239 9 18 chr12 19188756 19188867 -102068663 - ID_B1 SINE B4 -45 179 70 3 731 444 246 72 93 chr12 19188867 19188894 -102068636 - MT2B LTR ERVL -346 254 120 3 731 852 196 173 0 chr12 19188907 19189132 -102068398 + Lx9 LINE L1 7381 7644 0 3 731 742 237 70 28 chr12 19189469 19189682 -102067848 - ID_B1 SINE B4 -2 222 1 3 731 279 304 115 19 chr12 19189983 19190087 -102067443 + Lx8 LINE L1 6967 7080 -393 3 731 247 49 0 47 chr12 19190181 19190224 -102067306 + (GGA)n Simple_repeat Simple_repeat 3 43 0 3 731 249 240 129 24 chr12 19190243 19190367 -102067163 + Lx8 LINE L1 7335 7471 -2 3 731 252 190 33 77 chr12 19190415 19190506 -102067024 + (CCCTAA)n Simple_repeat Simple_repeat 2 88 0 3 731 445 316 29 66 chr12 19190545 19190786 -102066744 + MT2A LTR ERVL 74 305 -228 3 731 5204 115 46 28 chr12 19191362 19192082 -102065448 - RMER17D LTR ERVK -2 887 151 3 731 189 0 0 0 chr12 19192082 19192103 -102065427 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 3 731 5204 115 46 28 chr12 19192103 19192253 -102065277 - RMER17D LTR ERVK -739 150 2 3 731 2726 75 143 141 chr12 19192765 19193276 -102064254 - RLTR1B LTR ERV1 0 512 1 3 731 467 266 167 18 chr12 19193330 19193785 -102063745 - L1_Mur3 LINE L1 -4044 1836 1314 3 731 451 259 39 48 chr12 19194082 19194313 -102063217 - L1_Mur3 LINE L1 -6622 1106 878 3 731 1692 31 0 0 chr12 19195063 19195256 -102062274 - B2_Mm1a SINE B2 0 193 1 3 731 354 347 54 49 chr12 19196743 19196928 -102060602 + MTD LTR MaLR 20 205 -214 3 731 2037 148 81 24 chr12 19196928 19197234 -102060296 - RLTR9D LTR ERVK 0 403 75 3 731 3263 43 5 5 chr12 19197234 19197630 -102059900 + MTA_Mm LTR MaLR 1 396 0 3 731 2037 148 81 24 chr12 19197630 19197704 -102059826 - RLTR9D LTR ERVK -329 74 1 3 731 304 346 126 16 chr12 19197706 19197897 -102059633 + MTD LTR MaLR 192 403 -16 3 731 192 77 0 0 chr12 19197912 19197938 -102059592 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 731 485 330 55 102 chr12 19197957 19198284 -102059246 + MTD-int LTR MaLR 24 361 -1219 3 731 6058 232 19 12 chr12 19198314 19198614 -102058916 - Lx4B LINE L1 -4 7054 6743 3 731 5177 92 21 75 chr12 19198614 19199463 -102058067 + RLTR13B4 LTR ERVK 1 803 0 3 731 6058 232 19 12 chr12 19199463 19200566 -102056964 - Lx4B LINE L1 -316 6742 5641 3 731 1517 301 41 35 chr12 19200581 19201317 -102056213 + MTD-int LTR MaLR 562 1457 -123 3 731 329 224 18 45 chr12 19201384 19201496 -102056034 - Lx4B LINE L1 -3 7055 6947 3 731 363 337 75 30 chr12 19201622 19201821 -102055709 - B3 SINE B2 0 216 9 3 731 639 201 35 0 chr12 19201925 19202069 -102055461 + MurSatRep1 Unknown Unknown 2 150 -1987 3 731 345 314 65 0 chr12 19202071 19202195 -102055335 - B1_Mur2 SINE Alu -17 132 1 3 731 8162 184 39 33 chr12 19202195 19203040 -102054490 + MurSatRep1 Unknown Unknown 284 1119 -1018 3 731 1042 162 34 0 chr12 19203040 19203219 -102054311 - B2_Mm1a SINE B2 -7 186 2 3 731 8162 184 39 33 chr12 19203219 19204215 -102053315 + MurSatRep1 Unknown Unknown 1120 2135 -2 3 731 396 319 45 32 chr12 19204246 19204556 -102052974 + MurSatRep1 Unknown Unknown 1822 2137 0 3 731 505 285 10 10 chr12 19204328 19204887 -102052643 + MMSAT4 Satellite Satellite 1 559 -5 3 731 478 293 75 56 chr12 19204757 19205392 -102052138 + MurSatRep1 Unknown Unknown 1691 2137 0 3 731 325 299 20 20 chr12 19205336 19205565 -102051965 + MMSAT4 Satellite Satellite 1 229 0 3 731 301 225 0 59 chr12 19205764 19205849 -102051681 + ORR1C2 LTR MaLR 291 370 -14 3 731 833 172 14 0 chr12 19206143 19206288 -102051242 + B1_Mus1 SINE Alu 2 148 0 3 731 2138 247 67 9 chr12 19206551 19207428 -102050102 - L1_Mur3 LINE L1 -3798 2082 1152 3 731 367 266 48 57 chr12 19207412 19207639 -102049891 - L1_Mur3 LINE L1 -6456 1272 1048 3 731 239 239 14 0 chr12 19208139 19208210 -102049320 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 3 731 255 194 28 0 chr12 19208269 19208377 -102049153 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 3 731 301 261 108 140 chr12 19208380 19208594 -102048936 - L1M4b LINE L1 -4365 2969 2763 3 731 266 240 41 0 chr12 19208862 19209033 -102048497 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 731 487 201 24 6 chr12 19209044 19209209 -102048321 + (CA)n Simple_repeat Simple_repeat 2 169 0 3 731 373 190 267 0 chr12 19209868 19209984 -102047546 + L1MC1 LINE L1 6187 6333 0 3 731 2133 88 66 15 chr12 19209994 19210329 -102047201 + L1_Mus3 LINE L1 6279 6630 -8 3 731 703 270 25 0 chr12 19210340 19210503 -102047027 + B3A SINE B2 2 168 -30 3 731 304 263 114 28 chr12 19210899 19211088 -102046442 + MIR SINE MIR 2 208 -60 3 731 338 230 0 26 chr12 19211658 19211734 -102045796 + HAL1-3A_ME LINE L1 1958 2031 -827 3 731 199 266 145 34 chr12 19214561 19214678 -102042852 - MIRc SINE MIR -125 143 14 3 731 874 188 7 0 chr12 19215315 19215464 -102042066 + B1_Mur4 SINE Alu 1 150 0 3 731 912 233 19 27 chr12 19215516 19215744 -102041786 + ID_B1 SINE B4 9 230 -62 3 731 404 312 15 45 chr12 19216629 19216763 -102040767 + B4A SINE B4 24 153 -139 3 731 660 207 41 7 chr12 19216764 19216910 -102040620 - URR1B DNA MER1_type -74 151 1 3 731 273 159 0 0 chr12 19217124 19217187 -102040343 + GA-rich Low_complexity Low_complexity 1 63 0 4 731 452 130 40 10 chr12 19219863 19219964 -102037566 + CT-rich Low_complexity Low_complexity 1 104 0 4 731 455 226 19 9 chr12 19220612 19220719 -102036811 - PB1D9 SINE Alu 0 120 13 4 731 699 247 37 27 chr12 19220910 19221097 -102036433 + B3 SINE B2 28 216 0 4 731 908 65 8 24 chr12 19221172 19221298 -102036232 + B1_Mm SINE Alu 22 145 -2 4 731 207 0 0 0 chr12 19221298 19221321 -102036209 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 731 592 199 76 8 chr12 19221333 19221465 -102036065 + ID_B1 SINE B4 82 222 -2 4 731 450 96 0 0 chr12 19221669 19221742 -102035788 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 731 641 197 45 45 chr12 19221777 19221910 -102035620 - B1_Mur3 SINE Alu -13 136 4 4 731 758 175 16 0 chr12 19221934 19222060 -102035470 - ID_B1 SINE B4 -5 219 92 4 731 1346 152 9 18 chr12 19223563 19223791 -102033739 + URR1A DNA MER1_type 1 226 0 4 731 618 264 61 25 chr12 19224614 19224812 -102032718 + B4A SINE B4 2 206 -86 4 731 700 220 0 0 chr12 19225048 19225166 -102032364 + RSINE1 SINE B4 11 128 -37 4 731 401 261 202 37 chr12 19225223 19225386 -102032144 - MER2 DNA MER2_type -149 196 7 4 731 217 304 78 26 chr12 19225779 19225894 -102031636 + MIRb SINE MIR 23 143 -125 4 731 2013 135 10 10 chr12 19225896 19226210 -102031320 - MTC LTR MaLR 0 421 108 4 731 507 214 52 73 chr12 19226213 19226349 -102031181 + B1_Mur3 SINE Alu 2 134 -15 4 731 423 125 0 0 chr12 19226486 19226558 -102030972 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 731 599 122 0 11 chr12 19227846 19227937 -102029593 - B2_Mm2 SINE B2 -102 93 4 4 731 367 271 0 0 chr12 19228014 19228099 -102029431 + PB1D10 SINE Alu 33 117 0 4 731 445 276 22 22 chr12 19228141 19228278 -102029252 + B1F1 SINE Alu 13 149 0 4 731 606 235 16 42 chr12 19228309 19228500 -102029030 + B3 SINE B2 15 195 0 4 731 729 244 31 18 chr12 19229065 19229228 -102028302 - B3A SINE B2 -30 168 4 4 731 367 278 37 0 chr12 19229614 19229722 -102027808 + PB1D7 SINE Alu 3 114 -6 4 731 285 329 0 0 chr12 19229736 19229815 -102027715 - MIRc SINE MIR -158 110 32 4 731 261 0 0 0 chr12 19230268 19230297 -102027233 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 731 610 301 41 45 chr12 19230475 19230767 -102026763 + B4A SINE B4 2 292 0 4 731 927 119 0 7 chr12 19231047 19231191 -102026339 - URR1B DNA MER1_type 0 225 83 4 731 180 288 60 36 chr12 19231776 19231859 -102025671 + MIRb SINE MIR 72 156 -112 4 731 294 264 3 30 chr12 19232266 19232366 -102025164 - MT2A LTR ERVL -496 105 9 4 731 880 264 8 57 chr12 19232854 19233143 -102024387 - MTE2b LTR MaLR -7 372 42 4 731 691 194 169 50 chr12 19233143 19233344 -102024186 + URR1A DNA MER1_type 1 225 -1 4 731 880 256 9 65 chr12 19233344 19233388 -102024142 - MTE2b LTR MaLR -338 41 1 4 731 446 136 0 12 chr12 19234186 19234268 -102023262 + (GGGGA)n Simple_repeat Simple_repeat 1 81 0 4 731 761 163 39 0 chr12 19234608 19234737 -102022793 + B1_Mus1 SINE Alu 3 136 -12 4 731 953 17 0 9 chr12 19234737 19234853 -102022677 + (TAAA)n Simple_repeat Simple_repeat 2 116 0 4 731 305 265 124 111 chr12 19234913 19235113 -102022417 + MLT1F1 LTR MaLR 141 334 -226 4 731 768 213 100 11 chr12 19235334 19235524 -102022006 + B3 SINE B2 5 211 -5 4 731 381 239 182 9 chr12 19235550 19235660 -102021870 + B1_Mur2 SINE Alu 1 129 -20 4 731 438 20 0 0 chr12 19235677 19235728 -102021802 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 731 442 81 46 0 chr12 19235888 19235975 -102021555 + (TCTG)n Simple_repeat Simple_repeat 2 92 0 4 731 480 48 0 0 chr12 19235975 19236038 -102021492 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 731 731 270 14 60 chr12 19238252 19238469 -102019061 + ID_B1 SINE B4 3 209 -15 4 731 186 43 0 0 chr12 19238474 19238497 -102019033 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 731 1045 109 0 0 chr12 19238520 19238658 -102018872 + B1_Mus1 SINE Alu 1 138 -10 4 731 555 16 0 0 chr12 19238731 19238795 -102018735 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 731 426 20 0 0 chr12 19238795 19238845 -102018685 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 731 561 343 37 0 chr12 19238897 19239113 -102018417 - L1MD LINE L1 -539 5820 5597 4 731 370 301 177 0 chr12 19239163 19239276 -102018254 - RSINE1 SINE B4 -29 136 4 4 731 839 85 34 0 chr12 19239283 19239401 -102018129 + RMER17D2 LTR ERVK 1 122 -687 4 731 826 114 8 8 chr12 19239404 19239537 -102017993 + RMER17D2 LTR ERVK 673 805 -4 4 731 3806 76 0 67 chr12 19239537 19239688 -102017842 + RLTR1B LTR ERV1 1 144 -368 4 731 1214 62 0 0 chr12 19239688 19239834 -102017696 + B1_Mus2 SINE Alu 2 147 0 4 731 3806 76 0 67 chr12 19239834 19240231 -102017299 + RLTR1B LTR ERV1 145 512 0 4 731 1344 181 180 140 chr12 19240339 19240783 -102016747 - MT2A LTR ERVL -71 462 1 4 731 330 350 14 0 chr12 19240784 19240927 -102016603 - L1MC LINE L1 -2476 5566 5422 4 731 699 259 24 0 chr12 19240944 19241110 -102016420 + B3A SINE B2 1 170 -28 4 731 573 15 0 0 chr12 19241120 19241186 -102016344 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 731 633 250 85 64 chr12 19241257 19241445 -102016085 - B3 SINE B2 -23 193 2 4 731 230 175 36 36 chr12 19241453 19241536 -102015994 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 4 731 783 158 0 67 chr12 19241538 19241687 -102015843 - B1_Mus1 SINE Alu 0 148 10 4 731 1661 232 29 62 chr12 19242073 19242296 -102015234 - MTD LTR MaLR -14 405 189 4 731 722 271 28 32 chr12 19242296 19242513 -102015017 - B3 SINE B2 0 216 1 4 731 1661 232 29 62 chr12 19242513 19242708 -102014822 - MTD LTR MaLR -231 188 1 4 731 6092 69 33 5 chr12 19242827 19243613 -102013917 - RLTR13C2 LTR ERVK 0 808 1 4 731 538 229 122 27 chr12 19244135 19244283 -102013247 + RSINE1 SINE B4 2 163 -2 4 731 288 0 0 0 chr12 19244291 19244323 -102013207 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 731 514 238 215 58 chr12 19244425 19244556 -102012974 - RMER10A LTR ERVL 0 442 301 4 731 845 81 8 0 chr12 19244556 19244679 -102012851 + (GA)n Simple_repeat Simple_repeat 1 124 0 4 731 514 238 215 58 chr12 19244679 19244873 -102012657 - RMER10A LTR ERVL -142 300 66 4 731 379 286 35 21 chr12 19245383 19245526 -102012004 + MLT1N2 LTR MaLR 413 557 -5 4 731 213 291 73 0 chr12 19245924 19245979 -102011551 - MIRm SINE MIR -121 155 97 4 731 2150 200 78 2 chr12 19246272 19246733 -102010797 + RLTR1 LTR ERV1 129 624 0 4 731 207 98 195 0 chr12 19246754 19246795 -102010735 - L3 LINE CR1 -3526 963 915 4 731 991 277 13 0 chr12 19247006 19247230 -102010300 - MTEa LTR MaLR -152 227 1 4 731 265 265 37 84 chr12 19247402 19247445 -102010085 + PB1D10 SINE Alu 15 51 -66 4 731 979 130 7 0 chr12 19247445 19247591 -102009939 - B1_Mus1 SINE Alu -1 147 1 4 731 265 265 37 84 chr12 19247591 19247654 -102009876 + PB1D10 SINE Alu 52 116 -1 4 731 4061 239 54 55 chr12 19247720 19248882 -102008648 + MTD-int LTR MaLR 92 1252 -6 4 731 592 160 32 40 chr12 19248895 19249005 -102008525 + MTD LTR MaLR 25 137 -282 4 731 5929 39 28 24 chr12 19249005 19249744 -102007786 + RLTR4_Mm LTR ERV1 1 742 0 4 731 592 160 32 40 chr12 19249744 19249757 -102007773 + MTD LTR MaLR 138 147 -272 4 731 11300 18 31 7 chr12 19249757 19252074 -102005456 + RLTR4_MM-int LTR ERV1 14 2385 -5216 4 731 21574 58 3 1 chr12 19252063 19254687 -102002843 + RLTR4_MM-int LTR ERV1 3218 5847 -1754 4 731 1267 35 0 0 chr12 19254684 19254828 -102002702 + MuLV-int LTR ERV1 7463 7606 0 4 731 5929 39 28 24 chr12 19254830 19255569 -102001961 + RLTR4_Mm LTR ERV1 1 742 0 4 731 1132 213 65 4 chr12 19255583 19255828 -102001702 + MTD LTR MaLR 160 419 0 4 731 812 249 15 15 chr12 19256362 19256566 -102000964 - B3 SINE B2 -11 205 2 4 731 774 126 206 149 chr12 19256937 19257017 -102000513 + URR1A DNA MER1_type 1 112 -114 4 731 1083 97 0 0 chr12 19257017 19257161 -102000369 + B1_Mm SINE Alu 1 144 -3 4 731 774 126 206 149 chr12 19257161 19257294 -102000236 + URR1A DNA MER1_type 113 226 0 4 731 366 286 11 21 chr12 19257752 19257845 -101999685 - PB1D10 SINE Alu -13 104 13 4 731 527 267 13 40 chr12 19258044 19258196 -101999334 - B1F SINE Alu 0 149 2 4 731 1348 206 161 6 chr12 19258223 19258546 -101998984 - ORR1D1 LTR MaLR -1 373 1 4 731 4690 60 5 2 chr12 19258863 19259448 -101998082 - LTRIS_Mus LTR ERV1 0 587 1 4 731 18837 69 1 27 chr12 19259448 19261894 -101995636 - MuRRS-int LTR ERV1 0 4690 2308 4 731 6878 83 8 20 chr12 19261889 19262974 -101994556 - MuRRS-int LTR ERV1 -3180 1510 143 4 731 1188 132 82 10 chr12 19263908 19264114 -101993416 - URR1A DNA MER1_type 0 226 6 4 731 2214 96 12 15 chr12 19264114 19264452 -101993078 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 91 57605 20 8 4 chr12 19264454 19270899 -101986631 - IAPEz-int LTR ERVK -2 6479 8 4 732 2214 96 12 15 chr12 19270899 19271237 -101986293 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 732 1175 310 24 9 chr12 19271248 19271580 -101985950 + ORR1D2 LTR MaLR 26 362 -8 4 732 256 353 35 0 chr12 19271757 19271873 -101985657 - RMER15 LTR ERVL -16 559 440 4 732 1793 239 46 2 chr12 19271876 19272271 -101985259 + MTD LTR MaLR 5 416 -3 4 732 522 227 57 45 chr12 19273337 19273494 -101984036 - ID_B1 SINE B4 -15 209 51 4 732 381 271 183 15 chr12 19274173 19274304 -101983226 + B3A SINE B2 8 160 -38 4 732 387 113 0 0 chr12 19274324 19274386 -101983144 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 732 529 208 20 10 chr12 19274414 19274516 -101983014 + B1_Mur2 SINE Alu 7 109 -40 4 732 198 91 0 0 chr12 19274626 19274659 -101982871 + (T)n Simple_repeat Simple_repeat 1 33 0 4 732 1258 54 0 0 chr12 19274659 19274806 -101982724 - B1_Mus2 SINE Alu 0 147 1 4 732 536 263 18 0 chr12 19274912 19275026 -101982504 + RSINE1 SINE B4 3 118 -47 4 732 294 95 0 0 chr12 19275026 19275068 -101982462 + (A)n Simple_repeat Simple_repeat 1 42 0 4 732 1245 109 16 0 chr12 19275080 19275272 -101982258 + B2_Mm2 SINE B2 1 195 0 4 732 23 68 0 0 chr12 19275362 19275406 -101982124 + AT_rich Low_complexity Low_complexity 1 44 0 4 732 207 146 0 0 chr12 19275431 19275472 -101982058 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 4 732 341 225 14 14 chr12 19275962 19276034 -101981496 + ID2 SINE ID 2 73 -10 4 732 405 0 0 0 chr12 19276249 19276294 -101981236 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 732 346 301 103 95 chr12 19276458 19276700 -101980830 - ORR1E LTR MaLR 0 359 116 5 732 936 154 28 0 chr12 19277001 19277144 -101980386 - B1_Mur1 SINE Alu 0 149 3 5 732 376 263 82 31 chr12 19277231 19277329 -101980201 + RSINE1 SINE B4 50 152 -13 5 732 1321 116 16 0 chr12 19277400 19277589 -101979941 + B2_Mm2 SINE B2 1 192 -3 5 732 219 292 109 50 chr12 19277695 19277814 -101979716 - L2 LINE L2 -503 2916 2791 5 732 2461 138 19 45 chr12 19278217 19278643 -101978887 - MTC LTR MaLR -6 415 1 5 732 519 280 80 0 chr12 19279661 19279786 -101977744 - RSINE1 SINE B4 -10 155 21 5 732 180 351 51 41 chr12 19279991 19280089 -101977441 - MER5A DNA MER1_type -28 161 63 5 732 384 121 0 0 chr12 19280158 19280216 -101977314 + RMER6D LTR ERVK 1 58 -662 5 732 329 237 52 0 chr12 19280468 19280579 -101976951 + B3 SINE B2 70 216 0 5 732 234 128 26 0 chr12 19280697 19280736 -101976794 + MLT1C LTR MaLR 149 188 -279 5 732 532 267 7 14 chr12 19280975 19281123 -101976407 - B1_Mm SINE Alu 0 147 1 5 732 659 23 0 33 chr12 19281303 19281393 -101976137 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 5 732 1484 198 87 107 chr12 19281535 19281900 -101975630 + MTD LTR MaLR 16 376 -43 5 732 705 182 35 35 chr12 19281900 19282042 -101975488 - B1_Mus1 SINE Alu -6 142 1 5 732 1484 198 87 107 chr12 19282042 19282088 -101975442 + MTD LTR MaLR 377 419 0 5 732 275 204 74 0 chr12 19282298 19282352 -101975178 + MTC LTR MaLR 77 134 -287 5 732 448 68 14 14 chr12 19282895 19282969 -101974561 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 732 669 276 92 42 chr12 19282998 19283236 -101974294 - B4A SINE B4 -38 254 5 5 732 526 268 81 0 chr12 19283364 19283487 -101974043 + ETnERV2-int LTR ERVK 7070 7202 -204 5 732 257 310 59 17 chr12 19283935 19284053 -101973477 + L2b LINE L2 3022 3144 -231 5 732 587 258 50 128 chr12 19284133 19284351 -101973179 + ID_B1 SINE B4 2 202 -22 5 732 274 208 153 0 chr12 19284583 19284655 -101972875 - MER5A DNA MER1_type -94 95 13 5 732 1049 138 6 0 chr12 19285170 19285329 -101972201 + B2_Mm1a SINE B2 1 160 -33 5 732 504 0 0 0 chr12 19285329 19285385 -101972145 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 5 732 525 189 33 0 chr12 19285626 19285748 -101971782 - Lx3B LINE L1 0 6973 6848 5 732 1024 91 14 0 chr12 19286276 19286419 -101971111 + B1_Mm SINE Alu 3 147 0 5 732 680 99 0 9 chr12 19286429 19286541 -101970989 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 5 732 380 243 92 35 chr12 19287187 19287328 -101970202 - B1F SINE Alu 0 149 1 5 732 207 69 0 0 chr12 19287431 19287460 -101970070 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 732 1279 308 84 113 chr12 19287703 19288417 -101969113 - MER63C DNA AcHobo -5 925 233 5 732 713 193 21 7 chr12 19288678 19288819 -101968711 + B1_Mur1 SINE Alu 1 143 -6 5 732 686 256 80 12 chr12 19288961 19289155 -101968375 + B3 SINE B2 13 215 -1 5 732 207 220 0 0 chr12 19289163 19289213 -101968317 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 732 348 336 13 83 chr12 19289233 19289300 -101968230 + B3A SINE B2 12 77 -121 5 732 917 105 27 27 chr12 19289300 19289447 -101968083 + B1_Mus1 SINE Alu 2 148 0 5 732 364 213 15 25 chr12 19289447 19289535 -101967995 + B3 SINE B2 78 155 -43 5 732 482 259 9 0 chr12 19290420 19290532 -101966998 - PB1D9 SINE Alu -6 114 2 5 732 1083 83 0 14 chr12 19290583 19290729 -101966801 + B1_Mus2 SINE Alu 4 147 0 5 732 1511 212 100 8 chr12 19291153 19291533 -101965997 - MTD LTR MaLR 0 419 5 5 732 345 382 38 17 chr12 19291764 19292001 -101965529 - MER46C DNA MER2_type -1 337 96 5 732 835 190 0 14 chr12 19292022 19292166 -101965364 - B1_Mur3 SINE Alu -6 143 2 5 732 373 235 12 0 chr12 19292285 19292366 -101965164 + ID2 SINE ID 2 83 0 5 732 330 212 33 56 chr12 19292452 19292542 -101964988 - HAL1-3A_ME LINE L1 -803 2055 1968 5 732 810 146 0 0 chr12 19292542 19292713 -101964817 + (TG)n Simple_repeat Simple_repeat 2 172 0 5 732 557 274 34 28 chr12 19296150 19296338 -101961192 - B3A SINE B2 -5 190 3 5 732 956 97 20 34 chr12 19296630 19296642 -101960888 - B1_Mus2 SINE Alu 0 147 139 5 732 423 0 0 0 chr12 19296642 19296689 -101960841 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 732 956 97 20 34 chr12 19296689 19296825 -101960705 - B1_Mus2 SINE Alu -9 138 1 5 732 390 173 109 8 chr12 19296949 19297077 -101960453 + Lx9 LINE L1 7503 7643 -1 5 732 3630 126 59 50 chr12 19297668 19298005 -101959525 - RMER17D LTR ERVK -170 719 387 5 732 402 21 0 0 chr12 19298005 19298052 -101959478 + (GGAGA)n Simple_repeat Simple_repeat 2 48 0 5 732 3630 126 59 50 chr12 19298052 19298427 -101959103 - RMER17D LTR ERVK -503 386 1 5 732 560 274 111 19 chr12 19298959 19299438 -101958092 - L1_Mur3 LINE L1 -4044 1836 1314 5 732 393 254 50 45 chr12 19299735 19299937 -101957593 - L1_Mur3 LINE L1 -6622 1106 904 5 732 328 346 29 22 chr12 19302078 19302217 -101955313 + MTD LTR MaLR 74 213 -206 5 732 512 237 34 8 chr12 19302217 19302336 -101955194 - RLTR9D LTR ERVK -2 401 280 5 732 659 56 0 63 chr12 19302331 19302351 -101955179 - RLTR9D LTR ERVK -314 89 75 5 732 3202 53 5 5 chr12 19302351 19302747 -101954783 + MTA_Mm LTR MaLR 1 396 0 5 732 659 56 0 63 chr12 19302747 19302821 -101954709 - RLTR9D LTR ERVK -329 74 1 5 732 201 74 0 0 chr12 19303027 19303054 -101954476 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 732 514 342 58 62 chr12 19303073 19303386 -101954144 + ORR1D-int LTR MaLR 24 361 -1219 5 732 4922 232 83 16 chr12 19303427 19304757 -101952773 - Lx4B LINE L1 -4 7054 5637 5 732 1478 323 38 61 chr12 19304767 19305485 -101952045 + ORR1D-int LTR MaLR 562 1262 -108 5 732 312 226 18 45 chr12 19305588 19305699 -101951831 - Lx4B LINE L1 -4 7054 6947 5 732 271 333 85 40 chr12 19305825 19306025 -101951505 - B3 SINE B2 0 216 8 5 732 7818 200 100 29 chr12 19306132 19306281 -101951249 + MurSatRep1 Unknown Unknown 2 175 -1962 5 732 359 306 65 0 chr12 19306281 19306405 -101951125 - B1_Mur2 SINE Alu -17 132 1 5 732 7818 200 100 29 chr12 19306405 19307252 -101950278 + MurSatRep1 Unknown Unknown 176 1120 -1017 5 732 1076 164 6 0 chr12 19307252 19307435 -101950095 - B2_Mm1a SINE B2 -8 185 2 5 732 7818 200 100 29 chr12 19307435 19308429 -101949101 + MurSatRep1 Unknown Unknown 1121 2134 -3 5 732 245 329 68 44 chr12 19308470 19308766 -101948764 + MurSatRep1 Unknown Unknown 1834 2136 -1 5 732 435 278 18 18 chr12 19308626 19308933 -101948597 + MMSAT4 Satellite Satellite 1 307 0 5 732 572 305 65 38 chr12 19308838 19309453 -101948077 + MurSatRep1 Unknown Unknown 1691 2076 -61 5 732 399 288 7 7 chr12 19309453 19309593 -101947937 + MMSAT4 Satellite Satellite 17 156 -12 5 732 572 305 65 38 chr12 19309593 19309689 -101947841 + MurSatRep1 Unknown Unknown 2077 2137 0 5 732 310 246 31 147 chr12 19309660 19309734 -101947796 + MurSatRep1 Unknown Unknown 1852 1921 -216 5 732 2962 96 0 2 chr12 19309734 19310140 -101947390 + L1_Mus1 LINE L1 6163 6567 0 5 732 310 246 31 147 chr12 19310140 19310289 -101947241 + MurSatRep1 Unknown Unknown 1922 2049 -88 5 732 414 249 5 5 chr12 19310158 19310297 -101947233 + MMSAT4 Satellite Satellite 1 139 0 5 732 259 271 35 12 chr12 19310533 19310619 -101946911 + ORR1B2 LTR MaLR 266 353 -14 5 732 900 146 21 0 chr12 19310908 19311052 -101946478 + B1_Mus1 SINE Alu 2 148 0 5 732 296 32 3 0 chr12 19311065 19311107 -101946423 - L1M4 LINE L1 -2402 3744 3683 5 732 2449 31 0 0 chr12 19311104 19311394 -101946136 + L1_Mm LINE L1 3695 3984 -1899 5 732 819 167 21 0 chr12 19311422 19311566 -101945964 + B1_Mus1 SINE Alu 2 148 0 5 732 2142 243 65 30 chr12 19311838 19312397 -101945133 - L1_Mur3 LINE L1 -3798 2082 1497 5 732 1647 31 5 0 chr12 19312397 19312589 -101944941 - B2_Mm1a SINE B2 0 193 1 5 732 2142 238 48 22 chr12 19312589 19312977 -101944553 - L1_Mur3 LINE L1 -4384 1496 1088 5 732 445 231 34 40 chr12 19312962 19313111 -101944419 - L1_Mur3 LINE L1 -6510 1218 1071 5 732 486 0 0 0 chr12 19313679 19313733 -101943797 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 732 198 0 0 0 chr12 19313745 19313767 -101943763 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 732 28 0 0 0 chr12 19313791 19313819 -101943711 + AT_rich Low_complexity Low_complexity 1 28 0 5 732 607 219 59 12 chr12 19313830 19314003 -101943527 - Lx2B LINE L1 -212 6796 6623 5 732 180 200 0 0 chr12 19314045 19314115 -101943415 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 732 369 194 0 33 chr12 19314170 19314351 -101943179 + (TA)n Simple_repeat Simple_repeat 1 175 0 5 732 432 0 0 0 chr12 19314355 19314403 -101943127 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 5 732 567 301 48 20 chr12 19314587 19314795 -101942735 + RLTR11A2 LTR ERVK 132 346 -181 5 732 1033 122 0 0 chr12 19314795 19314942 -101942588 + B1_Mm SINE Alu 1 147 0 5 732 479 312 45 111 chr12 19314942 19315065 -101942465 + RLTR11A2 LTR ERVK 334 441 -87 5 732 250 85 54 54 chr12 19315139 19315251 -101942279 + (TTA)n Simple_repeat Simple_repeat 2 113 0 5 732 575 183 17 6 chr12 19315498 19315674 -101941856 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 732 430 215 22 4 chr12 19315695 19315921 -101941609 + (CA)n Simple_repeat Simple_repeat 1 230 0 5 732 233 243 45 45 chr12 19315925 19316037 -101941493 - L1M1 LINE L1 -401 5899 5788 5 732 366 205 256 0 chr12 19316550 19316667 -101940863 + L1MC1 LINE L1 6187 6333 0 5 732 2129 102 60 9 chr12 19316677 19317013 -101940517 + L1_Mus3 LINE L1 6279 6631 -7 5 732 667 294 24 0 chr12 19317024 19317194 -101940336 + B3A SINE B2 2 175 -23 5 732 246 315 95 47 chr12 19317581 19317771 -101939759 + MIRb SINE MIR 4 202 -66 5 732 311 261 53 21 chr12 19318306 19318400 -101939130 + HAL1-3A_ME LINE L1 1931 2027 -831 5 732 200 253 80 57 chr12 19318618 19318706 -101938824 - L2 LINE L2 -2854 565 476 5 732 187 307 83 45 chr12 19319881 19320014 -101937516 - L2a LINE L2 -191 3235 3098 5 732 184 317 135 24 chr12 19321207 19321333 -101936197 - MIRm SINE MIR -118 158 19 5 732 239 262 162 0 chr12 19321891 19321971 -101935559 + PB1D10 SINE Alu 12 104 -13 5 732 814 174 7 20 chr12 19321972 19322119 -101935411 + B1_Mur4 SINE Alu 1 145 -5 5 732 878 202 28 42 chr12 19322148 19322365 -101935165 + ID_B1 SINE B4 3 216 -8 5 732 526 311 19 72 chr12 19323268 19323476 -101934054 + B4A SINE B4 24 220 -72 5 732 531 308 52 0 chr12 19323493 19323665 -101933865 + B3A SINE B2 2 182 -16 5 732 925 146 0 0 chr12 19323699 19323836 -101933694 + B1_Mur4 SINE Alu 1 137 -13 5 732 504 238 0 0 chr12 19323918 19324086 -101933444 + (TG)n Simple_repeat Simple_repeat 1 168 0 6 732 2335 96 0 58 chr12 19324108 19324451 -101933079 + ORR1A2 LTR MaLR 1 323 -4 6 732 510 91 0 0 chr12 19324462 19324539 -101932991 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 732 726 12 0 0 chr12 19324540 19324623 -101932907 + (GAGAA)n Simple_repeat Simple_repeat 1 83 0 6 732 469 276 37 31 chr12 19325310 19325471 -101932059 - RSINE1 SINE B4 -3 162 1 6 732 217 105 17 50 chr12 19325494 19325554 -101931976 + A-rich Low_complexity Low_complexity 2 59 0 6 732 1103 183 27 5 chr12 19326179 19326398 -101931132 - URR1B DNA MER1_type -1 224 1 6 732 222 179 0 0 chr12 19326611 19326667 -101930863 + GA-rich Low_complexity Low_complexity 1 56 0 6 732 2199 188 26 42 chr12 19327930 19328385 -101929145 - RLTR1D LTR ERV1 -1 604 157 6 732 387 0 0 0 chr12 19329532 19329575 -101927955 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 732 380 130 14 0 chr12 19330561 19330630 -101926900 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 6 732 6869 67 4 0 chr12 19331219 19332059 -101925471 + IAP-d-int LTR ERVK 5700 6542 0 6 732 2432 75 3 48 chr12 19332059 19332411 -101925119 + RLTR10D LTR ERVK 1 336 -23 6 732 249 135 0 0 chr12 19332643 19332695 -101924835 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 732 601 200 46 35 chr12 19332737 19332876 -101924654 - B1_Mur3 SINE Alu -3 144 10 6 732 704 200 8 0 chr12 19332909 19333034 -101924496 - ID_B1 SINE B4 -7 217 92 6 732 1323 152 9 18 chr12 19334538 19334766 -101922764 + URR1A DNA MER1_type 1 226 0 6 732 246 283 124 56 chr12 19335425 19335586 -101921944 - MIRb SINE MIR 0 268 97 6 732 705 253 55 30 chr12 19335589 19335789 -101921741 + B4A SINE B4 2 206 -86 6 732 686 256 0 0 chr12 19336017 19336146 -101921384 + RSINE1 SINE B4 3 131 -34 6 732 234 320 0 26 chr12 19336281 19336358 -101921172 - MER2 DNA MER2_type -263 82 8 6 732 234 264 0 40 chr12 19336801 19336876 -101920654 + G-rich Low_complexity Low_complexity 5 76 0 6 732 208 299 83 25 chr12 19336966 19337086 -101920444 + MIRb SINE MIR 14 140 -128 6 732 2047 120 19 10 chr12 19337091 19337402 -101920128 - MTC LTR MaLR 0 421 108 6 732 693 190 40 47 chr12 19337405 19337554 -101919976 + B1_Mur3 SINE Alu 2 149 0 6 732 207 161 0 0 chr12 19337558 19337589 -101919941 + polypurine Low_complexity Low_complexity 4 34 0 6 732 222 37 0 0 chr12 19337590 19337617 -101919913 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 732 870 62 0 0 chr12 19337617 19337729 -101919801 + (GA)n Simple_repeat Simple_repeat 2 114 0 6 732 571 228 18 0 chr12 19337729 19337843 -101919687 - MTC LTR MaLR -305 116 1 6 732 207 350 100 0 chr12 19338557 19338657 -101918873 + MIRb SINE MIR 114 223 -45 6 732 261 167 83 0 chr12 19338931 19338979 -101918551 + MTE2a LTR MaLR 1 52 -327 6 732 35 0 0 0 chr12 19338983 19339018 -101918512 + AT_rich Low_complexity Low_complexity 1 35 0 6 732 858 201 99 11 chr12 19339027 19339218 -101918312 - B3 SINE B2 -6 210 3 6 732 879 172 14 0 chr12 19339247 19339392 -101918138 - B1_Mus1 SINE Alu -1 147 1 6 732 1404 158 0 5 chr12 19339423 19339646 -101917884 + URR1B DNA MER1_type 1 222 -3 6 732 788 232 149 75 chr12 19339649 19339957 -101917573 + MTE2a LTR MaLR 35 365 -14 6 732 290 330 21 54 chr12 19340064 19340157 -101917373 + RSINE1 SINE B4 34 123 -42 6 732 249 33 0 0 chr12 19340191 19340221 -101917309 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 732 585 0 0 0 chr12 19340221 19340285 -101917245 + (GA)n Simple_repeat Simple_repeat 1 65 0 6 732 2665 115 5 20 chr12 19341660 19342069 -101915461 - RLTR9E LTR ERVK -6 403 1 6 732 401 215 20 61 chr12 19342132 19342146 -101915384 - B3A SINE B2 -101 97 89 6 732 294 29 0 0 chr12 19342146 19342181 -101915349 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 732 546 131 0 0 chr12 19342181 19342265 -101915265 - B2_Mm2 SINE B2 -109 86 3 6 732 358 230 0 0 chr12 19342351 19342425 -101915105 + PB1D10 SINE Alu 44 117 0 6 732 437 235 12 0 chr12 19342430 19342511 -101915019 + RSINE1 SINE B4 53 134 -31 6 732 456 233 73 24 chr12 19342509 19342632 -101914898 + B1F1 SINE Alu 21 149 0 6 732 613 210 75 102 chr12 19342663 19342849 -101914681 + B3 SINE B2 15 195 0 6 732 331 345 84 46 chr12 19343836 19344097 -101913433 + L1MD2 LINE L1 6084 6354 -5 6 732 786 270 39 39 chr12 19344109 19344390 -101913140 + B4A SINE B4 2 282 -10 6 732 954 143 175 0 chr12 19344680 19344869 -101912661 - URR1B DNA MER1_type 0 225 4 6 732 181 339 46 0 chr12 19345442 19345507 -101912023 + MIRb SINE MIR 89 156 -112 6 732 235 315 93 16 chr12 19345537 19345666 -101911864 - RMER15 LTR ERVL -21 554 416 6 732 3577 27 119 16 chr12 19345832 19346279 -101911251 - MT2_Mm LTR ERVL 0 493 1 6 732 320 266 3 30 chr12 19346367 19346473 -101911057 - MT2A LTR ERVL -496 105 3 6 732 877 249 9 33 chr12 19346960 19347246 -101910284 - MTE2a LTR MaLR -12 367 34 6 732 865 173 147 0 chr12 19347246 19347437 -101910093 + URR1A DNA MER1_type 2 220 -6 6 732 234 260 201 57 chr12 19347920 19348079 -101909451 - ORR1A2 LTR MaLR -35 292 111 6 732 315 213 0 0 chr12 19348297 19348372 -101909158 + G-rich Low_complexity Low_complexity 2 76 0 6 732 656 194 82 0 chr12 19348705 19348839 -101908691 + B1_Mus1 SINE Alu 3 147 -1 6 732 261 0 0 0 chr12 19348839 19348868 -101908662 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 6 732 321 216 58 67 chr12 19348868 19348972 -101908558 + L1MC4a LINE L1 7011 7113 -769 6 732 291 320 79 32 chr12 19348988 19349114 -101908416 + MLT1F2 LTR MaLR 145 276 -284 6 732 690 244 89 0 chr12 19349405 19349573 -101907957 + B3 SINE B2 3 185 -31 6 732 564 276 47 16 chr12 19349904 19350033 -101907497 - ETnERV2-int LTR ERVK -204 7202 7070 6 732 488 186 148 33 chr12 19350091 19350213 -101907317 + B1_Mur2 SINE Alu 1 136 -13 6 732 927 74 5 43 chr12 19350222 19350406 -101907124 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 6 732 222 37 0 0 chr12 19350574 19350601 -101906929 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 6 732 279 93 0 0 chr12 19350613 19350656 -101906874 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 732 225 315 75 43 chr12 19351999 19352092 -101905438 - RMER21A LTR ERV1 -593 354 259 6 732 728 273 13 44 chr12 19352928 19353154 -101904376 + ID_B1 SINE B4 3 221 -3 6 732 951 120 0 0 chr12 19353189 19353322 -101904208 + B1_Mus1 SINE Alu 1 133 -15 6 732 582 15 0 0 chr12 19353419 19353486 -101904044 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 732 516 324 184 0 chr12 19353501 19353757 -101903773 - L1MD2 LINE L1 -460 5899 5597 6 732 410 255 189 0 chr12 19353814 19353920 -101903610 - RSINE1 SINE B4 -36 129 4 6 732 4131 150 56 10 chr12 19353927 19354256 -101903274 + RMER17D2 LTR ERVK 1 345 -464 6 732 735 0 0 31 chr12 19354256 19354354 -101903176 + (TCTCC)n Simple_repeat Simple_repeat 2 96 0 6 732 4131 150 56 10 chr12 19354354 19354636 -101902894 + RMER17D2 LTR ERVK 346 641 -168 6 732 213 39 0 0 chr12 19354636 19354662 -101902868 + (CCA)n Simple_repeat Simple_repeat 2 27 0 6 732 4131 150 56 10 chr12 19354662 19354823 -101902707 + RMER17D2 LTR ERVK 642 808 -1 6 732 228 275 36 36 chr12 19354904 19354924 -101902606 + Tigger12A DNA MER2_type 460 537 -249 6 732 333 140 0 17 chr12 19354924 19354982 -101902548 - MT2A LTR ERVL -71 462 406 6 732 554 246 139 14 chr12 19355541 19355685 -101901845 + RSINE1 SINE B4 2 163 -2 6 732 315 251 315 54 chr12 19355824 19355955 -101901575 - RMER10A LTR ERVL 0 442 301 6 732 986 131 6 0 chr12 19355955 19356123 -101901407 + (GA)n Simple_repeat Simple_repeat 1 169 0 6 732 315 251 315 54 chr12 19356123 19356286 -101901244 - RMER10A LTR ERVL -142 300 71 6 732 332 268 69 48 chr12 19356826 19356971 -101900559 + MLT1N2 LTR MaLR 410 557 -5 6 732 188 319 95 26 chr12 19357145 19357261 -101900269 + MER5A DNA MER1_type 62 185 -4 6 732 967 278 19 4 chr12 19357844 19358102 -101899428 - MTEa LTR MaLR -122 257 1 6 732 281 250 103 0 chr12 19358237 19358305 -101899225 + ID_B1 SINE B4 51 125 -99 6 732 241 299 35 78 chr12 19358265 19358318 -101899212 + PB1D10 SINE Alu 5 51 -66 6 732 907 164 7 0 chr12 19358318 19358464 -101899066 - B1_Mus1 SINE Alu -1 147 1 6 732 241 299 35 78 chr12 19358464 19358482 -101899048 + PB1D10 SINE Alu 52 115 -2 6 732 243 182 0 0 chr12 19358482 19358526 -101899004 + ID_B1 SINE B4 181 224 0 6 732 231 229 71 0 chr12 19358513 19358583 -101898947 + BLACKJACK DNA AcHobo 920 994 -1950 6 732 297 322 39 55 chr12 19358604 19358732 -101898798 - MLT1C LTR MaLR -9 458 333 6 732 444 134 58 47 chr12 19358736 19358810 -101898720 + MTB LTR MaLR 2 76 -320 6 732 1151 161 98 35 chr12 19358810 19359126 -101898404 - RLTR13B1 LTR ERVK 0 893 562 6 732 1220 187 31 4 chr12 19359151 19359377 -101898153 - RLTR13B1 LTR ERVK -661 232 1 6 732 2261 109 9 6 chr12 19359377 19359702 -101897828 + MTB LTR MaLR 75 400 0 6 732 242 209 91 23 chr12 19359727 19359815 -101897715 - MLT1C LTR MaLR -137 253 160 6 732 595 258 119 15 chr12 19359840 19360041 -101897489 + B4A SINE B4 3 224 -68 6 732 276 222 0 0 chr12 19360163 19360217 -101897313 - MLT1C LTR MaLR -362 105 52 6 732 2188 103 33 3 chr12 19360217 19360519 -101897011 + RLTR10E LTR ERVK 1 311 0 6 732 901 113 7 7 chr12 19360861 19361012 -101896518 + (TTTC)n Simple_repeat Simple_repeat 4 154 0 6 732 438 72 0 0 chr12 19361014 19361112 -101896418 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 6 732 313 270 40 0 chr12 19361160 19361234 -101896296 - ID4_ SINE ID -6 77 1 6 732 828 209 0 13 chr12 19361247 19361397 -101896133 - B1_Mur1 SINE Alu 0 149 2 6 732 846 151 7 7 chr12 19361445 19361592 -101895938 + B1_Mus1 SINE Alu 1 147 -1 6 732 630 268 38 6 chr12 19361715 19361873 -101895657 - RSINE1 SINE B4 0 165 3 6 732 416 255 77 19 chr12 19362016 19362172 -101895358 - MTD-int LTR MaLR -1091 167 3 6 732 769 216 244 3 chr12 19362180 19362512 -101895018 - MTD LTR MaLR 0 419 8 6 732 4102 222 49 95 chr12 19362576 19363363 -101894167 + MTD-int LTR MaLR 96 848 -410 6 732 1025 97 14 0 chr12 19363363 19363507 -101894023 + B1_Mm SINE Alu 2 147 0 6 732 4102 222 49 95 chr12 19363507 19363936 -101893594 + MTD-int LTR MaLR 849 1256 -2 6 732 1302 217 84 4 chr12 19363946 19364244 -101893286 + MTD LTR MaLR 25 322 -57 6 732 2553 110 148 0 chr12 19364509 19364927 -101892603 - RLTR45 LTR ERVK 0 482 3 6 732 337 80 0 0 chr12 19364929 19364979 -101892551 - RLTR45-int LTR ERVK 0 7244 7195 6 732 3750 182 26 27 chr12 19364972 19365905 -101891625 - RLTR45-int LTR ERVK -413 7804 6331 6 732 3630 67 22 38 chr12 19365994 19366492 -101891038 - RLTR45-int LTR ERVK -5596 1648 1159 6 732 36044 36 1 1 chr12 19366560 19372479 -101885051 + L1Md_T LINE L1 1 5589 -297 7 732 8910 19 0 0 chr12 19372479 19373475 -101884055 + L1Md_T LINE L1 5590 6585 0 7 732 1328 89 16 0 chr12 19373502 19373692 -101883838 + B2_Mm2 SINE B2 1 193 -2 7 732 31 26 0 0 chr12 19373785 19373823 -101883707 + AT_rich Low_complexity Low_complexity 1 38 0 7 732 207 146 0 0 chr12 19373854 19373895 -101883635 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 7 732 335 250 13 13 chr12 19374385 19374462 -101883068 + ID2 SINE ID 2 78 -5 7 732 465 34 0 0 chr12 19374672 19374731 -101882799 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 732 207 306 124 45 chr12 19374772 19374861 -101882669 - L2b LINE L2 -52 3323 3228 7 732 415 282 217 53 chr12 19374869 19375187 -101882343 - ORR1D2 LTR MaLR 0 370 1 7 732 1021 150 0 0 chr12 19375422 19375569 -101881961 - B1_Mur1 SINE Alu 0 149 3 7 732 311 276 93 31 chr12 19375656 19375753 -101881777 + RSINE1 SINE B4 50 152 -13 7 732 1395 99 0 5 chr12 19375823 19376015 -101881515 + B2_Mm2 SINE B2 1 191 -4 7 732 2474 137 16 45 chr12 19376644 19377071 -101880459 - MTC LTR MaLR -6 415 1 7 732 542 286 71 0 chr12 19378106 19378232 -101879298 - RSINE1 SINE B4 -10 155 21 7 732 406 89 0 0 chr12 19378604 19378660 -101878870 + RMER6D LTR ERVK 1 56 -664 7 732 354 232 13 66 chr12 19378916 19379048 -101878482 + B3 SINE B2 73 193 0 7 732 234 128 26 0 chr12 19379134 19379173 -101878357 + MLT1C LTR MaLR 149 188 -279 7 732 580 265 0 13 chr12 19379412 19379561 -101877969 - B1_Mm SINE Alu 0 147 1 7 732 539 40 14 0 chr12 19379741 19379815 -101877715 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 7 732 1408 213 107 27 chr12 19379957 19380294 -101877236 + MTD LTR MaLR 16 379 -40 7 732 749 186 7 54 chr12 19380313 19380461 -101877069 - B1_Mus1 SINE Alu 0 148 8 7 732 358 102 0 0 chr12 19380461 19380510 -101877020 + MTD LTR MaLR 373 421 0 7 732 306 93 0 0 chr12 19380726 19380769 -101876761 + MTC LTR MaLR 92 134 -287 7 732 367 78 15 15 chr12 19381307 19381372 -101876158 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 732 706 268 92 42 chr12 19381401 19381639 -101875891 - B4A SINE B4 -38 254 5 7 732 520 260 81 0 chr12 19381767 19381890 -101875640 + ETnERV2-int LTR ERVK 7070 7202 -204 7 732 323 299 135 35 chr12 19382299 19382528 -101875002 + L2b LINE L2 2991 3242 -184 7 732 624 237 50 128 chr12 19382533 19382751 -101874779 + ID_B1 SINE B4 2 202 -22 7 732 276 194 153 0 chr12 19382982 19383054 -101874476 - MER5A1 DNA MER1_type -71 95 13 7 732 787 98 203 0 chr12 19383549 19383682 -101873848 + B2_Mm1a SINE B2 1 160 -33 7 732 447 19 0 0 chr12 19383682 19383734 -101873796 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 7 732 489 168 47 0 chr12 19383976 19384083 -101873447 - Lx3B LINE L1 0 6973 6862 7 732 1130 63 14 0 chr12 19384624 19384767 -101872763 + B1_Mm SINE Alu 3 147 0 7 732 1139 92 4 0 chr12 19384769 19385000 -101872530 + (GAAA)n Simple_repeat Simple_repeat 1 232 0 7 732 2013 102 28 22 chr12 19385297 19385617 -101871913 - RLTRETN_Mm LTR ERVK 0 322 1 7 732 352 220 168 30 chr12 19385960 19386091 -101871439 - B1F1 SINE Alu 0 149 1 7 732 2314 68 29 3 chr12 19386507 19386818 -101870712 - IAPLTR2b LTR ERVK -8 319 1 7 732 569 302 33 11 chr12 19386818 19387001 -101870529 - MER63C DNA AcHobo -53 877 691 7 732 236 290 52 41 chr12 19387040 19387137 -101870393 + MER63D DNA AcHobo 537 634 -427 7 732 1035 309 120 14 chr12 19387072 19387489 -101870041 - MER63C DNA AcHobo -237 693 233 7 732 712 193 21 7 chr12 19387750 19387891 -101869639 + B1_Mur1 SINE Alu 1 143 -6 7 732 702 217 62 72 chr12 19388035 19388229 -101869301 + B3 SINE B2 13 204 -12 7 732 288 277 0 0 chr12 19388246 19388311 -101869219 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 732 446 221 161 112 chr12 19388327 19388404 -101869126 + B3 SINE B2 3 89 -127 7 732 909 112 27 20 chr12 19388404 19388550 -101868980 + B1_Mus1 SINE Alu 2 148 0 7 732 446 221 161 112 chr12 19388550 19388615 -101868915 + B3 SINE B2 90 152 -64 7 732 542 223 9 0 chr12 19389505 19389617 -101867913 - PB1D9 SINE Alu -6 114 2 7 732 1140 82 0 20 chr12 19389667 19389816 -101867714 + B1_Mus2 SINE Alu 2 147 0 7 732 1503 212 100 8 chr12 19390232 19390612 -101866918 - MTD LTR MaLR 0 419 5 7 732 382 368 44 12 chr12 19390838 19391088 -101866442 - MER46C DNA MER2_type -1 337 80 7 732 833 190 0 14 chr12 19391096 19391240 -101866290 - B1_Mur3 SINE Alu -6 143 2 7 732 320 253 13 0 chr12 19391360 19391435 -101866095 + ID2 SINE ID 2 77 -6 7 732 854 161 0 4 chr12 19391498 19391763 -101865767 + (TG)n Simple_repeat Simple_repeat 1 263 0 7 732 1643 37 0 0 chr12 19392182 19392369 -101865161 - B2_Mm1a SINE B2 -5 188 2 7 732 22 0 0 0 chr12 19393590 19393612 -101863918 + GC_rich Low_complexity Low_complexity 1 22 0 7 732 1527 57 5 10 chr12 19396428 19396622 -101860908 - B2_Mm1a SINE B2 0 193 1 7 732 190 267 149 3 chr12 19396716 19396790 -101860740 - MIRm SINE MIR -115 161 74 7 732 477 34 0 0 chr12 19397175 19397234 -101860296 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 732 286 244 35 168 chr12 19397252 19397395 -101860135 - B4A SINE B4 -40 125 1 7 733 253 394 15 30 chr12 19399038 19399169 -101858361 - MER3 DNA MER1_type -78 131 3 7 733 325 325 98 13 chr12 19399179 19399332 -101858198 + MER5A1 DNA MER1_type 1 166 0 7 733 232 262 11 56 chr12 19399406 19399495 -101858035 - MER5B DNA MER1_type -62 116 32 7 733 525 280 35 28 chr12 19399893 19400081 -101857449 - B3A SINE B2 -4 191 3 7 733 205 111 18 36 chr12 19400346 19400402 -101857128 + T-rich Low_complexity Low_complexity 1 55 0 7 733 994 109 0 0 chr12 19400423 19400560 -101856970 - B1_Mm SINE Alu -10 137 1 7 733 820 188 174 0 chr12 19400614 19400838 -101856692 + Lx9 LINE L1 7382 7644 0 7 733 693 260 66 24 chr12 19401170 19401383 -101856147 - ID_B1 SINE B4 -2 222 1 7 733 257 281 202 8 chr12 19401695 19401824 -101855706 + Lx8 LINE L1 6978 7131 -342 7 733 311 192 14 0 chr12 19401893 19401966 -101855564 + GA-rich Low_complexity Low_complexity 3 76 0 7 733 283 312 54 71 chr12 19402051 19402275 -101855255 + MT2B LTR ERVL 382 601 0 7 733 5121 122 48 26 chr12 19402680 19403184 -101854346 - RMER17D LTR ERVK -2 887 378 7 733 720 35 0 0 chr12 19403184 19403271 -101854259 + (GGAGA)n Simple_repeat Simple_repeat 2 88 0 7 733 5121 122 48 26 chr12 19403271 19403634 -101853896 - RMER17D LTR ERVK -512 377 2 7 733 446 280 125 3 chr12 19404195 19404643 -101852887 - L1_Mur3 LINE L1 -4044 1836 1314 7 733 417 271 19 34 chr12 19404938 19405144 -101852386 - L1_Mur3 LINE L1 -6622 1106 904 7 733 420 360 57 44 chr12 19406297 19406446 -101851084 + ORR1D-int LTR MaLR 132 285 -1295 7 733 351 60 0 0 chr12 19406446 19406496 -101851034 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 7 733 420 360 57 44 chr12 19406496 19406573 -101850957 + ORR1D-int LTR MaLR 286 361 -1219 7 733 939 109 0 39 chr12 19406618 19406771 -101850759 - B1_Mus2 SINE Alu 0 147 1 7 733 6039 229 21 14 chr12 19406778 19408186 -101849344 - Lx4B LINE L1 -4 7054 5637 7 733 1589 320 33 60 chr12 19408196 19408916 -101848614 + ORR1D-int LTR MaLR 562 1262 -108 7 733 290 262 9 36 chr12 19409021 19409132 -101848398 - Lx4A LINE L1 -4 7054 6947 7 733 272 279 12 48 chr12 19409385 19409468 -101848062 - B3 SINE B2 -133 83 4 7 733 7960 197 95 35 chr12 19409563 19409712 -101847818 + MurSatRep1 Unknown Unknown 2 164 -1973 7 733 308 323 65 0 chr12 19409712 19409836 -101847694 - B1_Mur2 SINE Alu -17 132 1 7 733 7960 197 95 35 chr12 19409836 19410682 -101846848 + MurSatRep1 Unknown Unknown 165 1119 -1018 7 733 1435 71 5 0 chr12 19410682 19410866 -101846664 - B2_Mm1a SINE B2 -7 186 2 7 733 7960 197 95 35 chr12 19410866 19411079 -101846451 + MurSatRep1 Unknown Unknown 1120 1330 -807 7 733 505 34 0 54 chr12 19411079 19411172 -101846358 + (TATAA)n Simple_repeat Simple_repeat 5 92 0 7 733 7960 197 95 35 chr12 19411172 19411973 -101845557 + MurSatRep1 Unknown Unknown 1331 2135 -2 7 733 549 320 57 38 chr12 19412179 19412902 -101844628 + MurSatRep1 Unknown Unknown 1691 2137 0 7 733 520 308 64 42 chr12 19412886 19413655 -101843875 + MurSatRep1 Unknown Unknown 1691 2137 0 7 733 372 255 58 38 chr12 19413598 19413816 -101843714 + MMSAT4 Satellite Satellite 1 222 -12 7 733 3124 79 0 2 chr12 19413866 19414272 -101843258 + L1_Mus1 LINE L1 6163 6567 0 7 733 385 294 0 0 chr12 19414296 19414422 -101843108 + MMSAT4 Satellite Satellite 43 168 0 7 733 261 316 78 47 chr12 19414422 19414589 -101842941 + MurSatRep1 Unknown Unknown 1835 2136 -1 7 733 330 269 0 0 chr12 19414801 19414879 -101842651 + ORR1C2 LTR MaLR 293 370 -14 7 733 887 121 15 0 chr12 19415176 19415308 -101842222 + B1_Mus1 SINE Alu 2 135 -13 7 733 1477 249 54 120 chr12 19415516 19415944 -101841586 - L1_Mur2 LINE L1 -3753 2127 1774 7 733 1217 48 0 14 chr12 19415944 19416091 -101841439 - B1_Mm SINE Alu -1 146 2 7 733 1477 252 68 68 chr12 19416091 19416887 -101840643 - L1_Mur2 LINE L1 -4107 1773 1002 7 733 693 36 0 0 chr12 19417487 19417571 -101839959 + (TA)n Simple_repeat Simple_repeat 1 84 0 7 733 25 0 0 0 chr12 19417589 19417614 -101839916 + AT_rich Low_complexity Low_complexity 1 25 0 7 733 501 224 86 15 chr12 19417625 19417795 -101839735 - Lx2B LINE L1 -171 6805 6625 7 733 416 211 18 0 chr12 19417837 19417946 -101839584 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 7 733 443 187 23 0 chr12 19417946 19418117 -101839413 + (TA)n Simple_repeat Simple_repeat 2 176 0 7 733 231 88 0 0 chr12 19418123 19418157 -101839373 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 7 733 38 0 0 0 chr12 19418239 19418277 -101839253 + AT_rich Low_complexity Low_complexity 1 38 0 7 733 599 236 52 12 chr12 19418288 19418462 -101839068 - Lx2B LINE L1 -212 6796 6623 7 733 433 198 17 8 chr12 19418504 19418743 -101838787 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 7 733 219 167 36 18 chr12 19418758 19418813 -101838717 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 7 733 681 296 48 105 chr12 19418974 19419184 -101838346 + RLTR11A2 LTR ERVK 134 334 -193 7 733 1182 63 0 0 chr12 19419184 19419326 -101838204 + B1_Mm SINE Alu 1 142 -5 7 733 681 296 48 105 chr12 19419326 19419466 -101838064 + RLTR11A2 LTR ERVK 335 464 -63 7 733 345 227 38 31 chr12 19419484 19419643 -101837887 + T-rich Low_complexity Low_complexity 5 164 0 7 733 445 204 23 6 chr12 19419798 19419971 -101837559 + (CA)n Simple_repeat Simple_repeat 1 176 0 8 733 182 174 22 0 chr12 19419990 19420036 -101837494 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 733 464 191 29 11 chr12 19420047 19420222 -101837308 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 733 360 153 41 14 chr12 19420898 19420971 -101836559 + L1MC1 LINE L1 6259 6333 0 8 733 2150 102 60 9 chr12 19420981 19421316 -101836214 + L1_Mus3 LINE L1 6279 6630 -8 8 733 674 294 24 0 chr12 19421327 19421497 -101836033 + B3A SINE B2 2 175 -23 8 733 237 279 113 31 chr12 19421886 19422074 -101835456 + MIR SINE MIR 5 202 -66 8 733 363 203 0 51 chr12 19422656 19422734 -101834796 + HAL1-3A_ME LINE L1 1958 2031 -827 8 733 237 33 0 0 chr12 19424915 19424945 -101832585 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 733 308 247 136 0 chr12 19426235 19426316 -101831214 + PB1D10 SINE Alu 12 103 -14 8 733 998 153 0 0 chr12 19426318 19426468 -101831062 + B1_Mur4 SINE Alu 1 150 0 8 733 814 236 17 75 chr12 19426521 19426755 -101830775 + ID_B1 SINE B4 9 227 -65 8 733 389 233 23 101 chr12 19427690 19427819 -101829711 + B4A SINE B4 108 226 -66 8 733 295 301 166 21 chr12 19427831 19428004 -101829526 + B3A SINE B2 2 195 -3 8 733 952 146 0 0 chr12 19428025 19428162 -101829368 + B1_Mur4 SINE Alu 1 137 -13 8 733 288 271 0 0 chr12 19428248 19428318 -101829212 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 733 2386 84 0 58 chr12 19428318 19428661 -101828869 + ORR1A2 LTR MaLR 1 323 -4 8 733 186 43 0 0 chr12 19428672 19428695 -101828835 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 733 315 0 0 0 chr12 19428697 19428732 -101828798 + (GAGAA)n Simple_repeat Simple_repeat 4 38 0 8 733 524 263 37 31 chr12 19429421 19429582 -101827948 - RSINE1 SINE B4 -3 162 1 8 733 1116 159 37 5 chr12 19430093 19430308 -101827222 - URR1B DNA MER1_type -3 222 1 8 733 246 211 0 0 chr12 19430519 19430576 -101826954 + GA-rich Low_complexity Low_complexity 1 57 0 8 733 235 326 111 22 chr12 19432297 19432432 -101825098 - MLT1J2 LTR MaLR -16 432 286 8 733 297 131 43 14 chr12 19433243 19433313 -101824217 + CT-rich Low_complexity Low_complexity 1 72 0 8 733 466 229 28 0 chr12 19433961 19434070 -101823460 - PB1D9 SINE Alu 0 120 9 8 733 719 242 37 27 chr12 19434257 19434444 -101823086 + B3 SINE B2 28 216 0 8 733 908 65 8 24 chr12 19434519 19434645 -101822885 + B1_Mm SINE Alu 22 145 -2 8 733 207 0 0 0 chr12 19434645 19434668 -101822862 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 733 596 189 68 8 chr12 19434680 19434813 -101822717 + ID_B1 SINE B4 82 222 -2 8 733 462 96 0 0 chr12 19435019 19435092 -101822438 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 733 641 197 45 45 chr12 19435129 19435262 -101822268 - B1_Mur3 SINE Alu -13 136 4 8 733 768 167 16 0 chr12 19435286 19435412 -101822118 - ID_B1 SINE B4 -5 219 92 8 733 1333 156 9 18 chr12 19436919 19437147 -101820383 + URR1A DNA MER1_type 1 226 0 8 733 660 267 50 25 chr12 19437971 19438171 -101819359 + B4A SINE B4 2 206 -86 8 733 728 230 0 0 chr12 19438399 19438525 -101819005 + RSINE1 SINE B4 3 128 -37 8 733 401 261 202 37 chr12 19438582 19438745 -101818785 - MER2 DNA MER2_type -149 196 7 8 733 209 312 78 26 chr12 19439138 19439253 -101818277 + MIRb SINE MIR 23 143 -125 8 733 1848 133 43 10 chr12 19439255 19439559 -101817971 - MTC LTR MaLR 0 421 108 8 733 1622 26 0 25 chr12 19439560 19439758 -101817772 + B2_Mm1a SINE B2 1 193 0 8 733 507 214 52 73 chr12 19439778 19439914 -101817616 + B1_Mur3 SINE Alu 2 134 -15 8 733 351 141 0 0 chr12 19440024 19440088 -101817442 + (GA)n Simple_repeat Simple_repeat 1 64 0 8 733 599 122 0 11 chr12 19441374 19441465 -101816065 - B2_Mm2 SINE B2 -102 93 4 8 733 351 269 0 0 chr12 19441549 19441627 -101815903 + PB1D10 SINE Alu 40 117 0 8 733 470 269 22 22 chr12 19441669 19441806 -101815724 + B1F1 SINE Alu 13 149 0 8 733 667 219 14 40 chr12 19441837 19442028 -101815502 + B3 SINE B2 15 195 0 8 733 764 238 31 18 chr12 19442595 19442758 -101814772 - B3A SINE B2 -30 168 4 8 733 186 289 94 26 chr12 19442839 19442956 -101814574 + L2c LINE L2 3038 3162 -225 8 733 394 259 37 0 chr12 19443144 19443252 -101814278 + PB1D7 SINE Alu 3 114 -6 8 733 305 296 61 10 chr12 19443266 19443365 -101814165 - MIRb SINE MIR -155 113 10 8 733 452 32 16 0 chr12 19443821 19443883 -101813647 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 733 739 279 41 45 chr12 19444062 19444354 -101813176 + B4A SINE B4 2 292 0 8 733 943 119 0 0 chr12 19444633 19444776 -101812754 - URR1B DNA MER1_type 0 225 83 8 733 186 288 59 38 chr12 19445362 19445457 -101812073 + MIRb SINE MIR 69 163 -105 8 733 251 314 97 35 chr12 19445458 19445603 -101811927 - RMER15 LTR ERVL -6 569 416 8 733 271 269 0 29 chr12 19445879 19445948 -101811582 - MT2A LTR ERVL -458 75 9 8 733 879 267 8 57 chr12 19446436 19446725 -101810805 - MTE2b LTR MaLR -7 372 42 8 733 683 194 169 50 chr12 19446725 19446926 -101810604 + URR1A DNA MER1_type 1 225 -1 8 733 879 261 9 65 chr12 19446926 19446970 -101810560 - MTE2b LTR MaLR -338 41 1 8 733 440 143 0 12 chr12 19447776 19447861 -101809669 + G-rich Low_complexity Low_complexity 3 86 0 8 733 765 163 39 0 chr12 19448201 19448330 -101809200 + B1_Mus1 SINE Alu 3 136 -12 8 733 875 36 0 9 chr12 19448330 19448442 -101809088 + (TAAA)n Simple_repeat Simple_repeat 2 112 0 8 733 304 278 121 106 chr12 19448502 19448702 -101808828 + MLT1F1 LTR MaLR 141 334 -226 8 733 768 213 100 11 chr12 19448923 19449113 -101808417 + B3 SINE B2 5 211 -5 8 733 381 239 182 9 chr12 19449140 19449250 -101808280 + B1_Mur2 SINE Alu 1 129 -20 8 733 564 15 0 0 chr12 19449267 19449332 -101808198 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 733 454 107 39 0 chr12 19449492 19449595 -101807935 + (TCTG)n Simple_repeat Simple_repeat 2 108 0 8 733 444 51 0 0 chr12 19449597 19449656 -101807874 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 733 731 270 14 60 chr12 19451870 19452087 -101805443 + ID_B1 SINE B4 3 209 -15 8 733 186 43 0 0 chr12 19452092 19452115 -101805415 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 733 1045 109 0 0 chr12 19452138 19452276 -101805254 + B1_Mus1 SINE Alu 1 138 -10 8 733 483 18 0 0 chr12 19452348 19452404 -101805126 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 733 462 18 0 0 chr12 19452404 19452458 -101805072 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 733 561 343 37 0 chr12 19452510 19452726 -101804804 - L1MD LINE L1 -539 5820 5597 8 733 370 301 177 0 chr12 19452776 19452889 -101804641 - RSINE1 SINE B4 -29 136 4 8 733 839 85 34 0 chr12 19452896 19453014 -101804516 + RMER17D2 LTR ERVK 1 122 -687 8 733 826 114 8 8 chr12 19453017 19453150 -101804380 + RMER17D2 LTR ERVK 673 805 -4 8 733 3840 74 0 61 chr12 19453150 19453301 -101804229 + RLTR1B LTR ERV1 1 144 -368 8 733 1214 62 0 0 chr12 19453301 19453447 -101804083 + B1_Mus2 SINE Alu 2 147 0 8 733 3840 74 0 61 chr12 19453447 19453840 -101803690 + RLTR1B LTR ERV1 145 512 0 8 733 1344 181 180 140 chr12 19453948 19454392 -101803138 - MT2A LTR ERVL -71 462 1 8 733 349 343 14 0 chr12 19454393 19454536 -101802994 - L1MC LINE L1 -2476 5566 5422 8 733 699 259 24 0 chr12 19454553 19454719 -101802811 + B3A SINE B2 1 170 -28 8 733 609 14 0 0 chr12 19454729 19454799 -101802731 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 733 633 250 85 64 chr12 19454870 19455058 -101802472 - B3 SINE B2 -23 193 2 8 733 230 175 36 36 chr12 19455066 19455149 -101802381 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 8 733 783 158 0 67 chr12 19455151 19455300 -101802230 - B1_Mus1 SINE Alu 0 148 10 8 733 1661 232 29 62 chr12 19455686 19455909 -101801621 - MTD LTR MaLR -14 405 189 8 733 722 271 28 32 chr12 19455909 19456126 -101801404 - B3 SINE B2 0 216 1 8 733 1661 232 29 62 chr12 19456126 19456321 -101801209 - MTD LTR MaLR -231 188 1 8 733 6108 68 33 5 chr12 19456440 19457226 -101800304 - RLTR13C2 LTR ERVK 0 808 1 8 733 538 229 122 27 chr12 19457748 19457896 -101799634 + RSINE1 SINE B4 2 163 -2 8 733 288 0 0 0 chr12 19457904 19457936 -101799594 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 733 514 238 215 58 chr12 19458038 19458169 -101799361 - RMER10A LTR ERVL 0 442 301 8 733 791 86 8 0 chr12 19458169 19458286 -101799244 + (GA)n Simple_repeat Simple_repeat 1 118 0 8 733 514 238 215 58 chr12 19458286 19458480 -101799050 - RMER10A LTR ERVL -142 300 66 8 733 366 286 35 21 chr12 19458990 19459133 -101798397 + MLT1N2 LTR MaLR 413 557 -5 8 733 213 291 73 0 chr12 19459532 19459587 -101797943 - MIRm SINE MIR -121 155 97 8 733 2196 199 76 2 chr12 19459880 19460342 -101797188 + RLTR1 LTR ERV1 129 624 0 8 733 207 98 195 0 chr12 19460363 19460404 -101797126 - L3 LINE CR1 -3526 963 915 8 733 991 277 13 0 chr12 19460615 19460839 -101796691 - MTEa LTR MaLR -152 227 1 8 733 289 255 37 84 chr12 19461011 19461054 -101796476 + PB1D10 SINE Alu 15 51 -66 8 733 993 123 7 0 chr12 19461054 19461200 -101796330 - B1_Mus1 SINE Alu -1 147 1 8 733 289 255 37 84 chr12 19461200 19461263 -101796267 + PB1D10 SINE Alu 52 116 -1 8 733 4157 238 53 55 chr12 19461329 19462492 -101795038 + MTD-int LTR MaLR 92 1252 -6 8 733 1685 198 88 6 chr12 19462505 19462870 -101794660 + MTD LTR MaLR 25 419 0 8 733 942 219 15 15 chr12 19463400 19463604 -101793926 - B3 SINE B2 -11 205 2 8 733 208 281 0 0 chr12 19463872 19463929 -101793601 + (TGGA)n Simple_repeat Simple_repeat 3 59 0 8 733 775 166 115 101 chr12 19463975 19464055 -101793475 + URR1A DNA MER1_type 1 101 -125 8 733 1057 111 0 0 chr12 19464055 19464199 -101793331 + B1_Mm SINE Alu 1 144 -3 8 733 775 166 115 101 chr12 19464199 19464326 -101793204 + URR1A DNA MER1_type 102 211 -15 8 733 366 286 11 21 chr12 19464790 19464883 -101792647 - PB1D10 SINE Alu -13 104 13 9 733 538 267 13 40 chr12 19465082 19465234 -101792296 - B1F SINE Alu 0 149 2 9 733 1311 212 161 6 chr12 19465261 19465584 -101791946 - ORR1D1 LTR MaLR -1 373 1 9 733 4696 60 5 2 chr12 19465900 19466485 -101791045 - LTRIS_Mus LTR ERV1 0 587 1 9 733 18755 70 1 27 chr12 19466485 19468932 -101788598 - MuRRS-int LTR ERV1 0 4690 2308 9 733 6866 83 8 20 chr12 19468927 19470012 -101787518 - MuRRS-int LTR ERV1 -3180 1510 143 9 733 1194 308 22 41 chr12 19470905 19470941 -101786589 + ORR1D2 LTR MaLR 1 33 -337 9 733 1210 144 81 9 chr12 19470941 19471152 -101786378 - URR1A DNA MER1_type 0 226 1 9 733 1194 308 22 41 chr12 19471152 19471484 -101786046 + ORR1D2 LTR MaLR 34 362 -8 9 733 247 362 35 0 chr12 19471661 19471777 -101785753 - RMER15 LTR ERVL -16 559 440 9 733 1767 239 46 2 chr12 19471780 19472175 -101785355 + MTD LTR MaLR 5 416 -3 9 733 539 235 103 36 chr12 19473230 19473424 -101784106 - ID_B1 SINE B4 -15 209 3 9 733 381 271 183 15 chr12 19474067 19474198 -101783332 + B3A SINE B2 8 160 -38 9 733 283 331 69 69 chr12 19474190 19474218 -101783312 + B4 SINE B4 40 64 -228 9 733 549 125 0 0 chr12 19474218 19474306 -101783224 + (CA)n Simple_repeat Simple_repeat 1 88 0 9 733 283 331 69 69 chr12 19474306 19474335 -101783195 + B4 SINE B4 65 198 -94 9 733 516 210 20 10 chr12 19474335 19474436 -101783094 + B1_Mur2 SINE Alu 8 109 -40 9 733 310 37 55 18 chr12 19474546 19474601 -101782929 + (TTTTTG)n Simple_repeat Simple_repeat 2 58 0 9 733 1250 55 0 0 chr12 19474603 19474749 -101782781 - B1_Mus2 SINE Alu -1 146 1 9 733 515 266 18 0 chr12 19474856 19474969 -101782561 + RSINE1 SINE B4 4 118 -47 9 733 231 114 0 0 chr12 19474969 19475004 -101782526 + (A)n Simple_repeat Simple_repeat 1 35 0 9 733 1229 109 16 0 chr12 19475016 19475208 -101782322 + B2_Mm2 SINE B2 1 195 0 9 733 23 68 0 0 chr12 19475300 19475344 -101782186 + AT_rich Low_complexity Low_complexity 1 44 0 9 733 207 146 0 0 chr12 19475369 19475410 -101782120 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 9 733 328 239 14 14 chr12 19475900 19475972 -101781558 + ID2 SINE ID 2 73 -10 9 733 459 0 0 0 chr12 19476187 19476238 -101781292 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 733 356 297 103 95 chr12 19476402 19476644 -101780886 - ORR1E LTR MaLR 0 359 116 9 733 976 167 0 0 chr12 19476948 19477092 -101780438 - B1_Mur1 SINE Alu -3 146 3 9 733 376 263 82 31 chr12 19477179 19477277 -101780253 + RSINE1 SINE B4 50 152 -13 9 733 1278 127 16 0 chr12 19477348 19477537 -101779993 + B2_Mm2 SINE B2 1 192 -3 9 733 181 310 109 50 chr12 19477643 19477762 -101779768 - L2 LINE L2 -503 2916 2791 9 733 2484 142 16 42 chr12 19478166 19478592 -101778938 - MTC LTR MaLR -6 415 1 9 733 521 305 69 0 chr12 19479604 19479735 -101777795 - RSINE1 SINE B4 -4 161 22 9 733 248 266 74 25 chr12 19480035 19480109 -101777421 + B4A SINE B4 3 80 -212 9 733 430 85 0 0 chr12 19480109 19480168 -101777362 + RMER6D LTR ERVK 1 59 -661 9 733 356 217 0 0 chr12 19480419 19480479 -101777051 + B3 SINE B2 70 129 -87 9 733 234 128 26 0 chr12 19480643 19480682 -101776848 + MLT1C LTR MaLR 149 188 -279 9 733 541 267 7 14 chr12 19480921 19481069 -101776461 - B1_Mm SINE Alu 0 147 1 9 733 647 35 12 0 chr12 19481249 19481335 -101776195 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 9 733 1519 201 87 107 chr12 19481477 19481842 -101775688 + MTD LTR MaLR 16 376 -43 9 733 636 197 35 35 chr12 19481842 19481984 -101775546 - B1_Mus1 SINE Alu -6 142 1 9 733 1519 201 87 107 chr12 19481984 19482030 -101775500 + MTD LTR MaLR 377 419 0 9 733 3556 10 10 0 chr12 19482225 19482617 -101774913 + MTA_Mm LTR MaLR 1 396 0 9 733 9322 35 2 1 chr12 19482617 19483714 -101773816 + MTA_Mm-int LTR MaLR 1 1098 0 9 733 3556 10 10 0 chr12 19483714 19484106 -101773424 + MTA_Mm LTR MaLR 1 396 0 9 733 306 93 0 0 chr12 19484137 19484180 -101773350 + MTC LTR MaLR 92 134 -287 9 733 265 82 20 20 chr12 19484723 19484773 -101772757 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 733 670 276 92 42 chr12 19484802 19485040 -101772490 - B4A SINE B4 -38 254 5 9 733 506 276 81 0 chr12 19485168 19485291 -101772239 + ETnERV2-int LTR ERVK 7070 7202 -204 9 733 348 299 135 35 chr12 19485714 19485943 -101771587 + L2b LINE L2 2991 3242 -184 9 733 574 263 50 128 chr12 19485948 19486166 -101771364 + ID_B1 SINE B4 2 202 -22 9 733 268 279 108 0 chr12 19486067 19486178 -101771352 + B1F2 SINE Alu 24 146 -3 9 733 285 194 153 0 chr12 19486398 19486470 -101771060 - MER5A1 DNA MER1_type -71 95 13 9 733 1078 126 6 0 chr12 19486965 19487124 -101770406 + B2_Mm1a SINE B2 1 160 -33 9 733 396 0 0 0 chr12 19487124 19487168 -101770362 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 9 733 518 189 32 8 chr12 19487410 19487533 -101769997 - Lx3B LINE L1 0 6973 6848 9 733 1185 62 7 0 chr12 19488056 19488202 -101769328 + B1_Mm SINE Alu 1 147 0 9 733 708 64 0 0 chr12 19488206 19488300 -101769230 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 9 733 396 243 92 35 chr12 19488950 19489091 -101768439 - B1F SINE Alu 0 149 1 9 733 225 289 195 65 chr12 19489094 19489195 -101768335 + MamRep434 DNA TcMar 139 244 -182 9 733 240 35 0 0 chr12 19489195 19489224 -101768306 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 733 225 289 195 65 chr12 19489224 19489307 -101768223 + MamRep434 DNA TcMar 245 346 -80 9 733 1227 308 88 116 chr12 19489467 19490180 -101767350 - MER63C DNA AcHobo -5 925 233 9 733 694 175 29 14 chr12 19490441 19490580 -101766950 + B1_Mur2 SINE Alu 1 141 -8 9 733 679 214 73 121 chr12 19490762 19490927 -101766603 + B3 SINE B2 45 215 -1 9 733 186 240 0 0 chr12 19490935 19490985 -101766545 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 733 447 209 140 178 chr12 19490994 19491072 -101766458 + B3 SINE B2 2 99 -117 9 733 940 98 27 34 chr12 19491072 19491220 -101766310 + B1_Mus1 SINE Alu 2 148 0 9 733 447 209 140 178 chr12 19491220 19491298 -101766232 + B3 SINE B2 100 152 -64 9 733 494 279 21 10 chr12 19492151 19492294 -101765236 - PB1D9 SINE Alu 0 149 4 9 733 1111 77 0 7 chr12 19492349 19492493 -101765037 + B1_Mus2 SINE Alu 5 147 0 9 733 1441 218 100 8 chr12 19492926 19493306 -101764224 - MTD LTR MaLR 0 419 5 9 733 460 343 38 17 chr12 19493533 19493770 -101763760 - MER46C DNA MER2_type -1 337 96 9 733 789 186 14 14 chr12 19493788 19493930 -101763600 - B1_Mur3 SINE Alu -6 143 2 9 733 355 235 12 0 chr12 19494049 19494130 -101763400 + ID2 SINE ID 2 83 0 9 733 774 173 0 0 chr12 19494187 19494438 -101763092 + (TG)n Simple_repeat Simple_repeat 1 251 0 9 733 23 0 0 0 chr12 19496031 19496054 -101761476 + GC_rich Low_complexity Low_complexity 1 23 0 9 733 4957 137 29 30 chr12 19497580 19498468 -101759062 - RMER17D LTR ERVK -2 887 1 9 733 561 266 158 9 chr12 19499008 19499463 -101758067 - L1_Mur3 LINE L1 -4044 1836 1314 9 733 416 245 75 35 chr12 19499788 19499987 -101757543 - L1_Mur3 LINE L1 -6644 1084 878 9 733 399 369 53 16 chr12 19502070 19502260 -101755270 + MTD LTR MaLR 15 211 -208 1 733 1912 171 68 23 chr12 19502262 19502571 -101754959 - RLTR9D LTR ERVK -2 401 75 2 733 3367 36 5 5 chr12 19502571 19502967 -101754563 + MTA_Mm LTR MaLR 1 396 0 3 733 1912 171 68 23 chr12 19502967 19503041 -101754489 - RLTR9D LTR ERVK -329 74 1 2 733 201 74 0 0 chr12 19503245 19503272 -101754258 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 733 7336 193 33 30 chr12 19503289 19503929 -101753601 + MurSatRep1 Unknown Unknown 491 1126 -1011 5 733 1081 143 5 16 chr12 19503929 19504114 -101753416 - B2_Mm1a SINE B2 -9 184 2 6 733 7336 193 33 30 chr12 19504114 19505113 -101752417 + MurSatRep1 Unknown Unknown 1127 2135 -2 5 733 343 318 71 42 chr12 19505144 19505454 -101752076 + MurSatRep1 Unknown Unknown 1822 2136 -1 7 733 454 272 22 22 chr12 19505310 19505533 -101751997 + MMSAT4 Satellite Satellite 1 223 0 8 733 476 318 49 39 chr12 19505487 19505646 -101751884 + MurSatRep1 Unknown Unknown 1747 1870 -267 9 733 462 288 0 0 chr12 19505646 19505785 -101751745 + MMSAT4 Satellite Satellite 30 168 0 1 733 476 318 49 39 chr12 19505785 19506126 -101751404 + MurSatRep1 Unknown Unknown 1871 2137 0 9 733 426 288 14 14 chr12 19506066 19506289 -101751241 + MMSAT4 Satellite Satellite 1 223 0 1 733 534 287 79 46 chr12 19506194 19506625 -101750905 + MurSatRep1 Unknown Unknown 1691 2135 -2 1 733 444 297 0 0 chr12 19506570 19506877 -101750653 + MMSAT4 Satellite Satellite 1 307 0 1 733 536 310 57 37 chr12 19506782 19507134 -101750396 + MurSatRep1 Unknown Unknown 1691 2049 -88 1 733 393 267 29 29 chr12 19507074 19507213 -101750317 + MMSAT4 Satellite Satellite 30 168 0 1 733 279 302 13 133 chr12 19507182 19507263 -101750267 + MurSatRep1 Unknown Unknown 1845 1898 -239 1 733 2917 97 2 2 chr12 19507263 19507666 -101749864 + L1_Mus1 LINE L1 6163 6565 -2 1 733 279 302 13 133 chr12 19507666 19507817 -101749713 + MurSatRep1 Unknown Unknown 1899 2049 -88 1 733 396 259 5 5 chr12 19507686 19507825 -101749705 + MMSAT4 Satellite Satellite 1 139 0 1 733 259 265 0 14 chr12 19508078 19508147 -101749383 + ORR1A4 LTR MaLR 248 315 -14 1 733 889 121 15 0 chr12 19508438 19508570 -101748960 + B1_Mus1 SINE Alu 2 135 -13 2 733 2206 242 61 10 chr12 19508840 19509768 -101747762 - L1_Mur3 LINE L1 -3798 2082 1088 2 733 441 271 29 35 chr12 19509753 19509925 -101747605 - L1_Mur3 LINE L1 -6510 1218 1048 2 733 189 0 0 0 chr12 19510492 19510513 -101747017 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 733 219 223 79 118 chr12 19510530 19510657 -101746873 - B2_Mm1a SINE B2 -1 192 71 2 733 337 202 0 12 chr12 19510670 19510750 -101746780 - Lx2B LINE L1 -297 6703 6625 2 733 287 212 0 12 chr12 19510793 19510874 -101746656 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 733 372 200 0 32 chr12 19510890 19511076 -101746454 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 733 738 101 0 0 chr12 19511080 19511189 -101746341 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 2 733 563 304 43 19 chr12 19511373 19511582 -101745948 + RLTR11A2 LTR ERVK 132 346 -181 2 733 934 150 0 0 chr12 19511582 19511729 -101745801 + B1_Mm SINE Alu 1 147 0 2 733 534 314 44 78 chr12 19511729 19511840 -101745690 + RLTR11A2 LTR ERVK 333 441 -87 2 733 380 97 16 98 chr12 19511840 19512034 -101745496 + (TTA)n Simple_repeat Simple_repeat 2 179 0 2 733 509 155 23 8 chr12 19512281 19512411 -101745119 + (CA)n Simple_repeat Simple_repeat 1 132 0 3 733 399 220 33 0 chr12 19512423 19512737 -101744793 + (CA)n Simple_repeat Simple_repeat 1 324 0 3 733 246 248 44 44 chr12 19512741 19512855 -101744675 - L1M1 LINE L1 -401 5899 5786 3 733 368 139 41 14 chr12 19513410 19513483 -101744047 + L1MC1 LINE L1 6259 6333 0 3 733 2111 105 63 9 chr12 19513493 19513828 -101743702 + L1_Mus3 LINE L1 6279 6631 -7 3 733 672 294 24 0 chr12 19513839 19514009 -101743521 + B3A SINE B2 2 175 -23 3 733 267 309 95 47 chr12 19514378 19514568 -101742962 + MIRb SINE MIR 4 202 -66 3 733 185 295 107 69 chr12 19515535 19515666 -101741864 - L2a LINE L2 -191 3235 3100 3 733 255 240 78 26 chr12 19517548 19517625 -101739905 + PB1D10 SINE Alu 17 97 -20 3 733 268 247 51 51 chr12 19517564 19517631 -101739899 + MT2B LTR ERVL 190 256 -345 3 733 875 159 0 20 chr12 19517631 19517779 -101739751 + B1_Mur4 SINE Alu 1 145 -5 3 733 673 211 0 34 chr12 19517769 19517916 -101739614 + ID_B1 SINE B4 75 216 -8 4 733 651 278 14 72 chr12 19518825 19519034 -101738496 + B4A SINE B4 24 220 -72 4 733 508 314 52 0 chr12 19519051 19519223 -101738307 + B3A SINE B2 2 182 -16 4 733 935 146 0 0 chr12 19519257 19519394 -101738136 + B1_Mur4 SINE Alu 1 137 -13 4 733 605 200 0 32 chr12 19519476 19519662 -101737868 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 733 481 143 0 0 chr12 19519695 19519772 -101737758 + ORR1A2 LTR MaLR 251 327 0 4 733 279 114 0 0 chr12 19519779 19519823 -101737707 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 733 615 27 0 0 chr12 19519823 19519896 -101737634 + (GAGAA)n Simple_repeat Simple_repeat 1 73 0 4 733 1788 143 86 0 chr12 19520012 19520313 -101737217 - IAPEY3_LTR LTR ERVK -5 327 1 4 733 1328 219 55 15 chr12 19520313 19520656 -101736874 - IAPEz-int LTR ERVK 0 6481 6125 4 733 52227 101 17 9 chr12 19520673 19527951 -101729579 - IAPEY3-int LTR ERVK -342 7338 1 4 733 1814 136 86 0 chr12 19527954 19528255 -101729275 - IAPEY3_LTR LTR ERVK -5 327 1 4 733 443 241 0 9 chr12 19528579 19528688 -101728842 - PB1D9 SINE Alu 0 120 13 5 733 293 254 185 85 chr12 19528688 19528768 -101728762 - ID_B1 SINE B4 0 224 17 5 733 643 237 54 43 chr12 19528877 19529062 -101728468 + B3 SINE B2 28 214 -2 5 733 885 80 2 14 chr12 19529131 19529272 -101728258 + B1_Mus1 SINE Alu 15 149 0 5 733 603 197 68 8 chr12 19529284 19529417 -101728113 + ID_B1 SINE B4 82 222 -2 5 733 264 120 0 0 chr12 19529617 19529667 -101727863 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 733 255 103 0 0 chr12 19529667 19529706 -101727824 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 91 644 179 47 31 chr12 19529716 19529843 -101727687 - B1_Mur3 SINE Alu -12 137 9 5 734 721 194 8 0 chr12 19529874 19529998 -101727532 - ID_B1 SINE B4 -8 216 92 5 734 1230 183 9 18 chr12 19531472 19531700 -101725830 + URR1A DNA MER1_type 1 226 0 5 734 210 318 112 43 chr12 19532363 19532524 -101725006 - MIRb SINE MIR 0 268 97 6 734 653 241 57 31 chr12 19532532 19532725 -101724805 + B4A SINE B4 8 205 -87 6 734 721 240 0 0 chr12 19532935 19533064 -101724466 + RSINE1 SINE B4 3 131 -34 6 734 274 310 0 30 chr12 19533186 19533276 -101724254 - MER2B DNA MER2_type -244 92 8 6 734 205 248 9 18 chr12 19533719 19533784 -101723746 + G-rich Low_complexity Low_complexity 1 64 0 6 734 244 304 79 18 chr12 19533890 19534004 -101723526 + MIRb SINE MIR 23 143 -125 6 734 1875 152 16 10 chr12 19534006 19534318 -101723212 - MTC LTR MaLR 0 421 108 6 734 359 200 28 112 chr12 19534320 19534427 -101723103 + MT2B LTR ERVL 167 264 -337 6 734 915 87 16 0 chr12 19534332 19534450 -101723080 + B1_Mm SINE Alu 16 135 -12 6 734 720 71 0 0 chr12 19534450 19534549 -101722981 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 6 734 521 233 68 30 chr12 19534564 19534697 -101722833 + B1_Mur3 SINE Alu 2 139 -10 7 734 243 61 0 0 chr12 19534698 19534731 -101722799 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 7 734 627 103 0 0 chr12 19534741 19534838 -101722692 + (GA)n Simple_repeat Simple_repeat 1 97 0 7 734 604 222 17 0 chr12 19534838 19534955 -101722575 - MTC LTR MaLR -302 119 1 6 734 249 167 83 0 chr12 19536058 19536106 -101721424 + MTE2a LTR MaLR 1 52 -327 7 734 24 0 0 0 chr12 19536110 19536134 -101721396 + AT_rich Low_complexity Low_complexity 1 24 0 7 734 547 308 80 94 chr12 19536134 19536154 -101721376 + MTE2a LTR MaLR 12 30 -389 7 734 598 236 141 11 chr12 19536154 19536338 -101721192 - B3 SINE B2 -6 210 3 7 734 547 308 80 94 chr12 19536338 19536366 -101721164 + MTE2a LTR MaLR 31 48 -371 7 734 931 152 14 0 chr12 19536366 19536511 -101721019 - B1_Mus1 SINE Alu -1 147 1 7 734 547 308 80 94 chr12 19536511 19536542 -101720988 + MTE2a LTR MaLR 49 77 -342 7 734 1195 174 14 14 chr12 19536542 19536764 -101720766 + URR1B DNA MER1_type 1 222 -3 7 734 640 230 164 119 chr12 19536764 19537095 -101720435 + MTE2a LTR MaLR 35 417 -2 7 734 227 296 136 0 chr12 19538840 19538921 -101718609 + PB1D10 SINE Alu 12 103 -14 7 734 871 164 0 20 chr12 19538923 19539072 -101718458 + B1_Mur4 SINE Alu 1 146 -4 7 734 794 223 28 42 chr12 19539100 19539315 -101718215 + ID_B1 SINE B4 3 214 -10 8 734 623 289 14 72 chr12 19540224 19540433 -101717097 + B4A SINE B4 24 220 -72 8 734 504 317 30 0 chr12 19540450 19540614 -101716916 + B3A SINE B2 2 170 -28 8 734 1624 37 0 5 chr12 19540636 19540828 -101716702 + B2_Mm1a SINE B2 2 192 -1 8 734 973 124 0 0 chr12 19540859 19540996 -101716534 + B1_Mur4 SINE Alu 1 137 -13 8 734 339 281 0 0 chr12 19541082 19541253 -101716277 + (TG)n Simple_repeat Simple_repeat 2 172 0 8 734 2194 94 3 70 chr12 19541286 19541628 -101715902 + ORR1A2 LTR MaLR 1 319 -8 8 734 500 310 37 19 chr12 19542354 19542515 -101715015 - RSINE1 SINE B4 -1 164 1 8 734 271 212 0 0 chr12 19542536 19542602 -101714928 + A-rich Low_complexity Low_complexity 1 66 0 8 734 1438 83 47 127 chr12 19543031 19543306 -101714224 - RLTR13B4 LTR ERVK 0 803 551 8 734 30648 244 31 24 chr12 19543316 19550520 -101707010 - MMERGLN-int LTR ERV1 -305 7251 1 9 734 2057 207 22 44 chr12 19550520 19550979 -101706551 - RLTR1D LTR ERV1 0 605 157 9 734 360 0 0 0 chr12 19552106 19552146 -101705384 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 734 405 0 0 0 chr12 19552146 19552190 -101705340 + (GA)n Simple_repeat Simple_repeat 1 45 0 9 734 376 208 10 10 chr12 19553147 19553249 -101704281 + CT-rich Low_complexity Low_complexity 3 104 0 9 734 714 253 37 27 chr12 19553456 19553643 -101703887 + B3 SINE B2 28 216 0 9 734 865 79 0 0 chr12 19553720 19553834 -101703696 + B1_Mm SINE Alu 24 137 -10 9 734 242 29 0 28 chr12 19553834 19553870 -101703660 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 734 352 261 77 17 chr12 19553870 19553987 -101703543 + ID_B1 SINE B4 74 197 -27 9 734 2512 111 0 45 chr12 19553987 19554363 -101703167 + RLTR10D LTR ERVK 1 359 0 9 734 8125 68 13 43 chr12 19554363 19555452 -101702078 + IAP-d-int LTR ERVK 1 1056 -5486 9 734 12853 65 1 1 chr12 19555450 19557022 -101700508 + IAP-d-int LTR ERVK 4970 6542 0 9 734 2261 110 0 59 chr12 19557022 19557379 -101700151 + RLTR10D LTR ERVK 1 336 -23 9 734 342 0 0 0 chr12 19557630 19557668 -101699862 + (TC)n Simple_repeat Simple_repeat 1 38 0 9 734 639 179 47 31 chr12 19557712 19557839 -101699691 - B1_Mur3 SINE Alu -12 137 9 1 734 216 241 49 49 chr12 19557785 19557846 -101699684 - B4A SINE B4 -148 144 84 1 734 686 215 18 0 chr12 19557869 19558012 -101699518 - ID_B1 SINE B4 -7 217 73 1 734 1393 130 13 18 chr12 19559499 19559726 -101697804 + URR1A DNA MER1_type 1 226 0 1 734 998 96 0 7 chr12 19560538 19560675 -101696855 + B1_Mus2 SINE Alu 2 137 -10 1 734 210 37 0 0 chr12 19560676 19560703 -101696827 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 734 704 272 50 25 chr12 19560718 19560918 -101696612 + B4A SINE B4 2 206 -86 1 734 689 240 0 0 chr12 19561146 19561271 -101696259 + RSINE1 SINE B4 3 127 -38 1 734 394 234 187 53 chr12 19561321 19561492 -101696038 - MER2 DNA MER2_type -145 200 7 1 734 2230 152 15 123 chr12 19562201 19562518 -101695012 - MTC LTR MaLR 0 421 116 1 734 689 182 44 22 chr12 19562518 19562653 -101694877 + B1_Mur3 SINE Alu 2 139 -10 1 734 297 0 0 0 chr12 19562654 19562687 -101694843 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 734 2230 152 15 123 chr12 19562687 19562724 -101694806 - MTC LTR MaLR -306 115 115 1 734 282 29 0 0 chr12 19562724 19562759 -101694771 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 734 531 56 0 0 chr12 19562759 19562829 -101694701 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 734 2230 152 15 123 chr12 19562829 19562942 -101694588 - MTC LTR MaLR -306 115 2 1 734 273 151 74 6 chr12 19564037 19564091 -101693439 + MTE2a LTR MaLR 1 52 -369 1 734 25 0 0 0 chr12 19564093 19564118 -101693412 + AT_rich Low_complexity Low_complexity 1 25 0 1 734 803 217 99 11 chr12 19564130 19564321 -101693209 - B3 SINE B2 -6 210 3 1 734 929 152 14 0 chr12 19564349 19564494 -101693036 - B1_Mus1 SINE Alu -1 147 1 1 734 1322 180 0 5 chr12 19564525 19564748 -101692782 + URR1B DNA MER1_type 1 222 -3 1 734 822 219 167 94 chr12 19564751 19565069 -101692461 + MTE2a LTR MaLR 35 375 -4 1 734 300 297 55 0 chr12 19565179 19565270 -101692260 + RSINE1 SINE B4 42 137 -28 1 734 200 35 35 0 chr12 19565295 19565324 -101692206 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 734 2819 39 2 141 chr12 19565324 19565772 -101691758 + RLTR10 LTR ERVK 5 390 0 1 734 7656 29 55 0 chr12 19565783 19566685 -101690845 + RLTR10-int LTR ERVK 41 992 -995 1 734 755 303 40 40 chr12 19566710 19567133 -101690397 + RLTR10-int LTR ERVK 1172 1594 -5987 1 734 8961 22 0 0 chr12 19567212 19568207 -101689323 + RLTR10-int LTR ERVK 990 1984 -3 1 734 2769 44 2 140 chr12 19568209 19568658 -101688872 + RLTR10 LTR ERVK 1 387 -3 1 734 183 100 0 0 chr12 19568665 19568695 -101688835 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 734 524 56 14 0 chr12 19568695 19568767 -101688763 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 734 32 0 0 0 chr12 19569456 19569488 -101688042 + AT_rich Low_complexity Low_complexity 1 32 0 1 734 237 221 0 0 chr12 19569543 19569611 -101687919 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 734 2610 136 5 5 chr12 19570457 19570864 -101686666 - RLTR9E LTR ERVK -2 407 1 1 734 479 105 0 26 chr12 19570864 19570942 -101686588 - ETnERV2-int LTR ERVK 0 7406 7331 1 734 16148 197 46 35 chr12 19571152 19575181 -101682349 - ETnERV2-int LTR ERVK -977 6429 1597 1 734 7408 213 55 17 chr12 19575234 19576850 -101680680 - ETnERV-int LTR ERVK -5094 2312 2 1 734 2713 116 5 14 chr12 19576851 19577264 -101680266 - RLTR9E LTR ERVK 0 409 1 1 734 477 0 0 0 chr12 19577345 19577398 -101680132 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 734 588 96 0 0 chr12 19577402 19577485 -101680045 - B2_Mm2 SINE B2 -110 85 3 1 734 384 231 0 0 chr12 19577568 19577646 -101679884 + PB1D10 SINE Alu 40 117 0 1 734 438 264 11 0 chr12 19577640 19577731 -101679799 + RSINE1 SINE B4 42 133 -32 1 734 485 215 73 24 chr12 19577729 19577853 -101679677 + B1F SINE Alu 20 149 0 1 734 400 182 25 25 chr12 19577884 19577963 -101679567 + B2_Mm2 SINE B2 15 93 -102 1 734 399 98 0 0 chr12 19577994 19578055 -101679475 + (GGGGA)n Simple_repeat Simple_repeat 2 62 0 1 734 680 221 36 0 chr12 19578399 19578539 -101678991 + B1_Mus1 SINE Alu 3 147 -1 1 734 24 0 0 0 chr12 19578544 19578568 -101678962 + AT_rich Low_complexity Low_complexity 1 24 0 1 734 756 238 85 0 chr12 19579037 19579226 -101678304 + B3 SINE B2 3 207 -9 1 734 447 197 157 33 chr12 19579254 19579375 -101678155 + B1_Mur2 SINE Alu 1 136 -13 1 734 750 53 0 0 chr12 19579381 19579476 -101678054 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 734 270 143 0 0 chr12 19579636 19579699 -101677831 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 1 734 246 116 0 0 chr12 19579718 19579761 -101677769 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 734 1517 189 104 72 chr12 19581773 19581845 -101675685 + RMER17D2 LTR ERVK 253 321 -488 1 734 801 58 0 24 chr12 19581845 19581968 -101675562 + (TCTCC)n Simple_repeat Simple_repeat 2 121 0 1 734 1517 189 104 72 chr12 19581968 19582328 -101675202 + RMER17D2 LTR ERVK 322 699 -110 1 734 564 163 211 34 chr12 19582321 19582440 -101675090 - MT2A LTR ERVL -180 313 92 1 734 606 207 68 6 chr12 19582436 19582573 -101674957 - MT2A LTR ERVL -468 133 1 1 734 532 259 20 0 chr12 19582574 19582721 -101674809 - L1MD LINE L1 -676 5566 5417 1 734 764 226 22 6 chr12 19582735 19582913 -101674617 + B3A SINE B2 1 181 -17 1 734 543 251 117 69 chr12 19583011 19583199 -101674331 - B3 SINE B2 0 198 2 1 734 319 363 44 7 chr12 19583219 19583355 -101674175 - L1MEg LINE L1 -4132 1952 1812 1 734 1144 88 0 0 chr12 19583358 19583505 -101674025 - B1_Mus1 SINE Alu 0 148 2 1 734 212 157 40 54 chr12 19583507 19583581 -101673949 + (TTTG)n Simple_repeat Simple_repeat 1 73 0 1 734 307 292 8 74 chr12 19583581 19583703 -101673827 - RLTR25B LTR ERVK -473 555 442 1 734 776 145 7 68 chr12 19583596 19583744 -101673786 - B1_Mus1 SINE Alu 0 148 10 1 734 206 236 0 0 chr12 19583797 19583852 -101673678 + T-rich Low_complexity Low_complexity 1 55 0 1 734 815 263 30 57 chr12 19584187 19584406 -101673124 - MTD LTR MaLR -14 405 196 1 734 557 192 37 142 chr12 19584411 19584454 -101673076 - B2_Mm2 SINE B2 0 195 165 1 734 345 24 0 0 chr12 19584454 19584496 -101673034 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 1 734 748 192 37 142 chr12 19584496 19584670 -101672860 - B3 SINE B2 -42 174 1 1 734 736 229 39 41 chr12 19584670 19584863 -101672667 - MTD LTR MaLR -202 194 3 1 734 544 241 115 20 chr12 19585476 19585624 -101671906 + RSINE1 SINE B4 2 163 -2 1 734 526 266 146 66 chr12 19585759 19585910 -101671620 - RMER10A LTR ERVL 0 442 279 1 734 495 0 0 0 chr12 19585910 19585965 -101671565 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 734 369 0 0 0 chr12 19585965 19586005 -101671525 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 734 526 266 146 66 chr12 19586005 19586202 -101671328 - RMER10A LTR ERVL -164 278 66 1 734 308 302 42 21 chr12 19586788 19586930 -101670600 + MLT1N2 LTR MaLR 413 557 -5 1 734 204 304 54 0 chr12 19587322 19587378 -101670152 - MIRm SINE MIR -121 155 97 1 734 190 122 195 0 chr12 19587604 19587645 -101669885 - L3 LINE CR1 -3526 963 915 1 734 992 290 9 0 chr12 19587857 19588081 -101669449 - MTEa LTR MaLR -153 226 1 1 734 269 234 109 0 chr12 19588214 19588278 -101669252 + ID_B1 SINE B4 51 121 -103 1 734 281 278 34 77 chr12 19588242 19588295 -101669235 + PB1D10 SINE Alu 5 51 -66 1 734 935 144 7 0 chr12 19588295 19588441 -101669089 - B1_Mus1 SINE Alu -1 147 1 1 734 281 278 34 77 chr12 19588441 19588504 -101669026 + PB1D10 SINE Alu 52 116 -1 1 734 339 302 50 142 chr12 19588581 19588709 -101668821 - MLT1B LTR MaLR -9 381 254 1 734 2627 91 39 8 chr12 19588709 19589097 -101668433 + MTB LTR MaLR 1 400 0 1 734 339 302 50 142 chr12 19589097 19589207 -101668323 - MLT1B LTR MaLR -137 253 165 1 734 638 223 124 20 chr12 19589236 19589437 -101668093 + B4A SINE B4 3 224 -68 1 734 3955 53 12 14 chr12 19589670 19590164 -101667366 - MT2_Mm LTR ERVL 0 493 1 1 734 1113 128 0 0 chr12 19590441 19590621 -101666909 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 734 1080 77 0 0 chr12 19590628 19590784 -101666746 + (TCTA)n Simple_repeat Simple_repeat 4 159 0 1 734 277 315 54 0 chr12 19590814 19590832 -101666698 - ID_B1 SINE B4 -127 97 1 1 734 300 270 40 0 chr12 19590832 19590906 -101666624 - ID4_ SINE ID -6 77 1 1 734 828 209 0 13 chr12 19590919 19591069 -101666461 - B1_Mur1 SINE Alu 0 149 2 1 734 871 158 7 0 chr12 19591117 19591263 -101666267 + B1_Mus1 SINE Alu 1 147 -1 1 734 528 292 39 7 chr12 19591387 19591542 -101665988 - RSINE1 SINE B4 -1 164 5 1 734 480 224 58 58 chr12 19591689 19591845 -101665685 - MTD-int LTR MaLR -1102 156 1 1 734 1095 221 227 0 chr12 19591851 19592181 -101665349 - MTD LTR MaLR 0 419 15 1 734 315 0 0 0 chr12 19592182 19592217 -101665313 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1 734 3169 251 41 65 chr12 19592281 19593190 -101664340 + MTC-int LTR MaLR 96 982 -276 1 734 1850 159 10 7 chr12 19593190 19593500 -101664030 + RLTR10E LTR ERVK 1 311 0 1 734 2862 235 53 58 chr12 19593500 19594372 -101663158 + MMERVK10C-int LTR ERVK 1 867 -6714 1 734 1517 177 118 58 chr12 19594355 19594822 -101662708 + RMER16-int LTR ERVK 314 659 -4747 1 734 363 185 123 0 chr12 19594797 19594878 -101662652 + MMERVK10C-int LTR ERVK 938 1028 -5109 1 734 13149 102 14 3 chr12 19594869 19596664 -101660866 + MMERVK10C-int LTR ERVK 1885 3698 -3883 1 734 841 246 30 10 chr12 19596664 19596865 -101660665 - RLTR46 LTR ERVK -115 205 1 1 734 2399 154 16 42 chr12 19596985 19597411 -101660119 - MTC LTR MaLR -6 415 1 1 734 541 278 71 0 chr12 19598441 19598567 -101658963 - RSINE1 SINE B4 -10 155 21 1 734 388 121 0 0 chr12 19598940 19598998 -101658532 + RMER6D LTR ERVK 1 58 -662 1 734 327 200 0 0 chr12 19599250 19599310 -101658220 + B3 SINE B2 70 129 -87 1 734 508 274 7 14 chr12 19599753 19599901 -101657629 - B1_Mm SINE Alu 0 147 1 1 734 719 32 11 0 chr12 19600081 19600175 -101657355 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 1 734 1493 210 95 83 chr12 19600317 19600669 -101656861 + MTD LTR MaLR 16 376 -43 1 734 605 217 33 53 chr12 19600669 19600820 -101656710 - B1_Mus1 SINE Alu 0 148 1 1 734 1493 210 95 83 chr12 19600820 19600866 -101656664 + MTD LTR MaLR 377 419 0 1 734 290 139 0 0 chr12 19601078 19601121 -101656409 + MTC LTR MaLR 92 134 -287 1 734 442 83 14 14 chr12 19601664 19601737 -101655793 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 734 692 268 92 42 chr12 19601766 19602004 -101655526 - B4A SINE B4 -38 254 5 1 734 244 330 108 31 chr12 19602687 19602909 -101654621 + L2a LINE L2 3004 3242 -184 1 734 603 296 9 87 chr12 19602914 19603132 -101654398 + ID_B1 SINE B4 2 202 -22 2 734 391 82 0 0 chr12 19603230 19603279 -101654251 + B2_Mm1t SINE B2 112 160 -33 2 734 396 0 0 0 chr12 19603279 19603323 -101654207 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 734 398 204 37 9 chr12 19603565 19603674 -101653856 - Lx3B LINE L1 0 6973 6862 2 734 1159 68 7 0 chr12 19604212 19604358 -101653172 + B1_Mm SINE Alu 1 147 0 2 734 915 80 0 0 chr12 19604360 19604485 -101653045 + (GAAA)n Simple_repeat Simple_repeat 1 125 0 2 734 455 206 92 35 chr12 19605093 19605234 -101652296 - B1F SINE Alu 0 149 1 2 734 227 310 121 107 chr12 19605237 19605443 -101652087 + MamRep434 DNA TcMar 139 347 -79 2 734 1217 312 82 113 chr12 19605600 19606308 -101651222 - MER63C DNA AcHobo -5 925 240 2 734 796 164 21 7 chr12 19606574 19606715 -101650815 + B1_Mur1 SINE Alu 1 143 -6 2 734 705 215 90 70 chr12 19606859 19607059 -101650471 + B3 SINE B2 13 216 0 2 734 390 228 0 0 chr12 19607069 19607170 -101650360 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 734 555 206 0 29 chr12 19607189 19607286 -101650244 + B3 SINE B2 6 99 -117 2 734 1077 106 0 0 chr12 19607286 19607428 -101650102 + B1_Mus1 SINE Alu 2 143 -5 2 734 396 143 16 0 chr12 19607463 19607526 -101650004 + B3 SINE B2 89 152 -64 2 734 561 214 9 0 chr12 19608416 19608528 -101649002 - PB1D9 SINE Alu -6 114 2 2 734 1163 89 0 0 chr12 19608578 19608724 -101648806 + B1_Mus2 SINE Alu 2 147 0 2 734 491 54 0 26 chr12 19608728 19608804 -101648726 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 2 734 1454 215 100 8 chr12 19609202 19609582 -101647948 - MTD LTR MaLR 0 419 5 2 734 1364 46 80 0 chr12 19609754 19609929 -101647601 + B2_Mm2 SINE B2 2 190 -5 2 734 477 346 38 12 chr12 19609991 19610231 -101647299 - MER46C DNA MER2_type -1 337 92 2 734 839 193 0 14 chr12 19610247 19610394 -101647136 - B1_Mur3 SINE Alu -3 146 2 2 734 371 235 12 0 chr12 19610514 19610595 -101646935 + ID2 SINE ID 2 83 0 2 734 724 156 6 11 chr12 19610656 19610837 -101646693 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 734 31 26 0 0 chr12 19612427 19612465 -101645065 + GC_rich Low_complexity Low_complexity 1 38 0 2 734 191 289 0 37 chr12 19615353 19615407 -101642123 - MIRm SINE MIR -115 161 110 2 734 197 345 68 54 chr12 19615528 19615675 -101641855 + MIR SINE MIR 54 202 -60 2 734 324 0 0 0 chr12 19615811 19615847 -101641683 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 734 263 260 10 40 chr12 19615908 19616008 -101641522 - B4A SINE B4 -195 97 1 2 734 2513 131 31 41 chr12 19616284 19616786 -101640744 + IAPLTR2_Mm LTR ERVK 1 475 0 2 734 299 383 15 30 chr12 19617922 19618054 -101639476 - MER3 DNA MER1_type -77 132 3 2 734 357 311 98 13 chr12 19618064 19618217 -101639313 + MER5A1 DNA MER1_type 1 166 0 2 734 228 229 22 67 chr12 19618291 19618380 -101639150 - MER5B DNA MER1_type -62 116 32 2 734 477 274 142 6 chr12 19618800 19618969 -101638561 - B3A SINE B2 -4 194 3 2 734 244 161 0 18 chr12 19619239 19619296 -101638234 + T-rich Low_complexity Low_complexity 5 60 0 2 734 1010 106 0 7 chr12 19619309 19619452 -101638078 - B1_Mm SINE Alu -5 142 1 2 734 844 191 173 0 chr12 19619504 19619729 -101637801 + Lx9 LINE L1 7381 7644 0 2 734 235 256 169 57 chr12 19620058 19620182 -101637348 - B1_Mus2 SINE Alu 0 147 10 2 734 810 258 26 26 chr12 19620080 19620271 -101637259 - ID_B1 SINE B4 -33 191 1 2 734 296 281 184 14 chr12 19620571 19620712 -101636818 + Lx8 LINE L1 6967 7131 -342 2 734 353 164 14 0 chr12 19620781 19620854 -101636676 + GA-rich Low_complexity Low_complexity 3 76 0 2 734 250 262 121 16 chr12 19620873 19620997 -101636533 + Lx8 LINE L1 7335 7471 -2 2 734 266 127 45 60 chr12 19621069 19621136 -101636394 + (CCCTAA)n Simple_repeat Simple_repeat 5 70 0 2 734 371 298 60 81 chr12 19621175 19621409 -101636121 + MT2A LTR ERVL 74 302 -231 2 734 5136 120 29 37 chr12 19621990 19622884 -101634646 - RMER17D LTR ERVK -2 887 1 2 734 512 239 30 85 chr12 19623447 19623648 -101633882 - L1_Mur3 LINE L1 -4044 1836 1647 2 734 440 263 96 9 chr12 19623661 19623891 -101633639 - L1_Mur3 LINE L1 -4314 1563 1314 2 734 454 245 42 26 chr12 19624226 19624419 -101633111 - L1_Mur3 LINE L1 -6655 1073 878 2 734 3058 30 21 0 chr12 19625649 19626022 -101631508 + MTA_Mm LTR MaLR 16 396 0 2 734 550 54 40 0 chr12 19626022 19626093 -101631437 - RLTR9D LTR ERVK -329 74 1 2 734 235 324 44 26 chr12 19626149 19626263 -101631267 + MTD LTR MaLR 265 380 -39 2 734 183 80 0 0 chr12 19626297 19626322 -101631208 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2 734 522 354 49 27 chr12 19626347 19626651 -101630879 + ORR1D-int LTR MaLR 24 360 -1220 2 734 5889 235 18 19 chr12 19626693 19628113 -101629417 - Lx4B LINE L1 -4 7054 5637 2 734 1659 318 41 52 chr12 19628123 19628832 -101628698 + ORR1D-int LTR MaLR 562 1262 -108 2 734 263 293 25 17 chr12 19628934 19629052 -101628478 - Lx4B LINE L1 -4 7054 6936 2 734 363 340 67 43 chr12 19629168 19629377 -101628153 - B3 SINE B2 0 216 3 2 734 7854 201 100 25 chr12 19629471 19629620 -101627910 + MurSatRep1 Unknown Unknown 2 175 -1962 2 734 332 306 65 0 chr12 19629620 19629744 -101627786 - B1_Mur2 SINE Alu -17 132 1 2 734 7854 201 100 25 chr12 19629744 19630589 -101626941 + MurSatRep1 Unknown Unknown 176 1118 -1019 2 734 1417 80 5 0 chr12 19630589 19630777 -101626753 - B2_Mm1a SINE B2 -3 190 2 2 734 7854 201 100 25 chr12 19630777 19631766 -101625764 + MurSatRep1 Unknown Unknown 1119 2134 -3 2 734 444 306 6 6 chr12 19631876 19631903 -101625627 + MMSAT4 Satellite Satellite 1 54 -340 2 734 436 306 29 25 chr12 19631903 19632107 -101625423 + MurSatRep1 Unknown Unknown 1845 2049 -88 2 734 444 306 6 6 chr12 19632107 19632270 -101625260 + MMSAT4 Satellite Satellite 55 394 0 2 734 412 295 88 63 chr12 19632224 19632551 -101624979 + MurSatRep1 Unknown Unknown 1691 2071 -66 2 734 378 292 14 14 chr12 19632551 19632690 -101624840 + MMSAT4 Satellite Satellite 30 168 0 2 734 412 295 88 63 chr12 19632690 19632745 -101624785 + MurSatRep1 Unknown Unknown 2072 2137 0 2 734 35927 38 1 1 chr12 19632741 19638574 -101618956 + L1Md_T LINE L1 1 5589 -297 2 734 9065 11 0 0 chr12 19638574 19639570 -101617960 + L1Md_T LINE L1 5590 6585 0 2 734 344 306 75 38 chr12 19639572 19639643 -101617887 + MurSatRep1 Unknown Unknown 1835 2135 0 2 734 387 258 51 36 chr12 19639643 19639862 -101617668 + MMSAT4 Satellite Satellite 1 222 0 2 734 2801 92 7 22 chr12 19639912 19640323 -101617207 + L1_Mus1 LINE L1 6163 6567 0 2 734 331 304 66 50 chr12 19640323 19640341 -101617189 + MurSatRep1 Unknown Unknown 1818 1846 -291 2 734 371 304 0 0 chr12 19640341 19640466 -101617064 + MMSAT4 Satellite Satellite 43 167 -1 2 734 331 304 66 50 chr12 19640466 19640636 -101616894 + MurSatRep1 Unknown Unknown 1847 2136 -1 2 734 253 308 25 8 chr12 19640585 19640703 -101616827 + MMSAT4 Satellite Satellite 35 154 -14 2 734 330 269 0 0 chr12 19640843 19640921 -101616609 + ORR1C2 LTR MaLR 293 370 -14 2 734 752 150 0 120 chr12 19641217 19641384 -101616146 + B1_Mus1 SINE Alu 2 148 0 2 734 1360 248 63 120 chr12 19641650 19642035 -101615495 - L1_Mur3 LINE L1 -3798 2082 1774 2 734 1226 55 0 0 chr12 19642035 19642181 -101615349 - B1_Mm SINE Alu 0 147 2 2 734 1360 249 57 73 chr12 19642181 19642827 -101614703 - L1_Mur3 LINE L1 -4107 1773 1087 2 734 418 256 34 40 chr12 19642812 19642987 -101614543 - L1_Mur3 LINE L1 -6507 1221 1048 2 734 270 0 0 0 chr12 19643540 19643570 -101613960 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 734 270 0 0 0 chr12 19643577 19643607 -101613923 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 734 404 269 82 10 chr12 19643650 19643814 -101613716 - Lx2B LINE L1 -171 6805 6631 2 734 1370 110 14 9 chr12 19643814 19644034 -101613496 + L1_Mus3 LINE L1 6412 6632 -6 2 734 697 292 23 0 chr12 19644042 19644213 -101613317 + B3A SINE B2 1 175 -23 2 734 294 287 102 51 chr12 19644600 19644776 -101612754 + MIRb SINE MIR 4 188 -80 2 734 405 85 17 0 chr12 19645376 19645435 -101612095 + HAL1-3A_ME LINE L1 1969 2028 -830 2 734 213 288 0 17 chr12 19645436 19645496 -101612034 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 734 587 250 52 42 chr12 19645700 19645913 -101611617 - IAP-d-int LTR ERVK -175 6646 6432 2 734 1549 125 101 27 chr12 19645903 19646219 -101611311 - IAPEY3-int LTR ERVK -342 7338 6965 2 734 1403 126 108 0 chr12 19646222 19646444 -101611086 - IAP-d-int LTR ERVK -1290 5252 5007 2 734 355 175 0 0 chr12 19646444 19646501 -101611029 - IAP-d-int LTR ERVK -6039 503 447 2 734 297 260 49 20 chr12 19646518 19646620 -101610910 - RLTR19-int LTR ERVK -6015 1566 1462 2 734 259 231 58 0 chr12 19646683 19646735 -101610795 - RLTR19-int LTR ERVK -983 1004 950 2 734 347 203 165 25 chr12 19646731 19646852 -101610678 - RLTR19-int LTR ERVK -5476 661 524 2 734 756 145 8 22 chr12 19646846 19646980 -101610550 - MMERVK10C-int LTR ERVK -6742 839 708 2 734 2074 113 103 108 chr12 19647079 19647507 -101610023 - MMERVK10C-int LTR ERVK -7155 426 1 2 734 1091 219 132 36 chr12 19647507 19647810 -101609720 - IAPEY3_LTR LTR ERVK 0 332 1 2 734 2494 50 3 45 chr12 19649820 19650156 -101607374 + RLTRETN_Mm LTR ERVK 1 322 0 2 734 184 359 76 0 chr12 19650535 19650627 -101606903 - MIRc SINE MIR -89 179 81 2 734 268 216 92 26 chr12 19651241 19651317 -101606213 + PB1D10 SINE Alu 17 97 -20 2 734 891 180 0 0 chr12 19651323 19651473 -101606057 + B1_Mur4 SINE Alu 1 150 0 2 734 887 248 15 20 chr12 19651542 19651744 -101605786 + ID_B1 SINE B4 21 221 -3 2 734 670 282 10 67 chr12 19652644 19652853 -101604677 + B4A SINE B4 24 220 -72 2 734 323 308 77 64 chr12 19652887 19653043 -101604487 + B3A SINE B2 38 195 -3 2 734 980 117 0 7 chr12 19653064 19653202 -101604328 + B1_Mur4 SINE Alu 1 137 -13 2 734 390 270 0 0 chr12 19653312 19653490 -101604040 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 734 654 198 0 0 chr12 19653509 19653676 -101603854 + (TG)n Simple_repeat Simple_repeat 1 167 0 2 734 2393 84 0 58 chr12 19653676 19654019 -101603511 + ORR1A2 LTR MaLR 1 323 -4 2 734 189 213 0 0 chr12 19654030 19654077 -101603453 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 734 1256 64 6 0 chr12 19654077 19654248 -101603282 + (GGGAA)n Simple_repeat Simple_repeat 4 175 0 2 734 3333 85 8 24 chr12 19654355 19654824 -101602706 + MMETn-int LTR ERVK 4383 4844 0 2 734 1700 116 33 66 chr12 19654824 19655157 -101602373 + RLTRETN_Mm LTR ERVK 1 322 0 2 734 533 261 43 25 chr12 19655742 19655903 -101601627 - RSINE1 SINE B4 -1 164 1 2 734 386 271 54 8 chr12 19656365 19656495 -101601035 - MER33 DNA MER1_type 0 324 189 2 734 1051 167 37 5 chr12 19656546 19656763 -101600767 - URR1B DNA MER1_type -1 224 1 2 734 294 159 0 0 chr12 19656977 19657046 -101600484 + GA-rich Low_complexity Low_complexity 1 69 0 2 734 466 146 21 0 chr12 19659740 19659836 -101597694 + CT-rich Low_complexity Low_complexity 1 98 0 3 734 432 255 18 9 chr12 19660558 19660669 -101596861 - PB1D9 SINE Alu 0 120 9 3 735 708 242 37 27 chr12 19660856 19661043 -101596487 + B3 SINE B2 28 216 0 3 735 925 53 0 0 chr12 19661118 19661231 -101596299 + B1_Mm SINE Alu 22 134 -13 3 735 182 33 67 0 chr12 19661234 19661264 -101596266 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 735 605 211 60 0 chr12 19661274 19661407 -101596123 + ID_B1 SINE B4 82 222 -2 3 735 690 69 0 0 chr12 19661610 19661711 -101595819 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 735 611 211 45 45 chr12 19661741 19661875 -101595655 - B1_Mur3 SINE Alu -12 137 4 3 735 761 165 16 0 chr12 19661899 19662026 -101595504 - ID_B1 SINE B4 -4 220 92 3 735 1307 148 13 18 chr12 19663526 19663753 -101593777 + URR1A DNA MER1_type 1 226 0 3 735 690 244 61 25 chr12 19664567 19664765 -101592765 + B4A SINE B4 2 206 -86 3 735 690 229 0 0 chr12 19665001 19665119 -101592411 + RSINE1 SINE B4 11 128 -37 3 735 379 277 190 25 chr12 19665176 19665339 -101592191 - MER2 DNA MER2_type -149 196 7 3 735 244 304 79 18 chr12 19665732 19665846 -101591684 + MIRb SINE MIR 23 143 -125 3 735 2032 129 10 10 chr12 19665848 19666162 -101591368 - MTC LTR MaLR 0 421 108 3 735 696 199 49 14 chr12 19666165 19666308 -101591222 + B1_Mur3 SINE Alu 2 149 0 3 735 300 200 0 0 chr12 19666323 19666413 -101591117 + GA-rich Low_complexity Low_complexity 1 90 0 3 735 2667 131 5 12 chr12 19667793 19668203 -101589327 - RLTR9E LTR ERVK -2 407 1 3 735 405 145 0 13 chr12 19668203 19668280 -101589250 - ETnERV2-int LTR ERVK 0 7406 7331 3 735 8120 60 36 51 chr12 19668477 19669671 -101587859 - ETnERV2-int LTR ERVK -977 6429 5254 3 735 4164 53 6 11 chr12 19669671 19670221 -101587309 + MTA_Mm-int LTR MaLR 552 1098 0 3 735 3252 29 50 0 chr12 19670221 19670598 -101586932 + MTA_Mm LTR MaLR 1 396 0 3 735 6325 280 68 40 chr12 19670639 19673319 -101584211 - ETnERV-int LTR ERVK -2442 3725 1023 3 735 186 316 0 0 chr12 19673319 19673376 -101584154 + L3 LINE CR1 925 981 -3508 3 735 6325 280 68 40 chr12 19673376 19674386 -101583144 - ETnERV-int LTR ERVK -2442 1022 2 3 735 2837 111 5 10 chr12 19674387 19674798 -101582732 - RLTR9E LTR ERVK 0 409 1 3 735 492 48 0 0 chr12 19674873 19674936 -101582594 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 735 670 66 0 42 chr12 19674936 19675020 -101582510 - B2_Mm2 SINE B2 -109 86 3 3 735 292 282 39 0 chr12 19675108 19675186 -101582344 + PB1D7 SINE Alu 40 120 0 3 735 431 272 11 0 chr12 19675180 19675272 -101582258 + RSINE1 SINE B4 42 134 -31 3 735 475 225 73 24 chr12 19675270 19675393 -101582137 + B1F1 SINE Alu 21 149 0 3 735 379 197 26 26 chr12 19675424 19675502 -101582028 + B2_Mm2 SINE B2 15 92 -103 3 735 353 141 0 14 chr12 19675525 19675597 -101581933 + G-rich Low_complexity Low_complexity 2 72 0 3 735 716 186 39 0 chr12 19675939 19676068 -101581462 + B1_Mus1 SINE Alu 3 136 -12 3 735 260 70 0 23 chr12 19676068 19676112 -101581418 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 735 274 269 133 112 chr12 19676163 19676371 -101581159 + MLT1F1 LTR MaLR 130 334 -226 3 735 769 234 83 0 chr12 19676594 19676786 -101580744 + B3 SINE B2 3 210 -6 3 735 442 209 167 35 chr12 19676808 19676922 -101580608 + B1_Mur2 SINE Alu 8 136 -13 3 735 714 24 0 0 chr12 19676927 19677011 -101580519 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 735 343 84 0 53 chr12 19677170 19677245 -101580285 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 3 735 489 115 0 0 chr12 19677247 19677334 -101580196 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 735 4821 56 3 2 chr12 19679256 19679842 -101577688 + LTRIS_Mus LTR ERV1 1 587 0 3 735 674 274 13 60 chr12 19680238 19680471 -101577059 + ID_B1 SINE B4 3 224 0 3 735 1020 123 0 0 chr12 19680502 19680640 -101576890 + B1_Mus1 SINE Alu 1 138 -10 3 735 192 77 0 0 chr12 19680719 19680745 -101576785 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 735 333 367 77 0 chr12 19680788 19680995 -101576535 - L1MD LINE L1 -540 5819 5597 3 735 992 71 0 0 chr12 19681025 19681152 -101576378 - B1_Mm SINE Alu 0 147 21 3 735 231 211 137 27 chr12 19681124 19681197 -101576333 - RMER10B LTR ERVL -253 145 65 3 735 1771 135 309 46 chr12 19681393 19681827 -101575703 - RLTR6_Mm LTR ERV1 -70 584 37 3 735 246 228 194 65 chr12 19681829 19681937 -101575593 - RLTR6_Mm LTR ERV1 -532 122 1 3 735 62159 36 19 1 chr12 19681937 19689575 -101567955 - RLTR6-int LTR ERV1 0 7778 1 3 735 1827 137 298 46 chr12 19689576 19690029 -101567501 - RLTR6_Mm LTR ERV1 -51 603 37 3 735 246 228 194 65 chr12 19690031 19690139 -101567391 - RLTR6_Mm LTR ERV1 -532 122 1 3 735 412 278 37 8 chr12 19690567 19690701 -101566829 + MLT1N2 LTR MaLR 413 550 -12 3 735 182 91 30 0 chr12 19690726 19690759 -101566771 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 3 735 181 319 95 26 chr12 19690904 19691020 -101566510 + MER5A DNA MER1_type 62 185 -4 3 735 199 231 93 37 chr12 19691111 19691165 -101566365 - MIR SINE MIR -61 147 91 3 735 2864 135 13 15 chr12 19691264 19691582 -101565948 + RLTR1C LTR ERV1 1 318 -185 3 735 3090 26 0 0 chr12 19691582 19691928 -101565602 + ORR1A0 LTR MaLR 1 346 0 3 735 2864 135 13 15 chr12 19691928 19692068 -101565462 + RLTR1C LTR ERV1 319 458 -45 3 735 988 270 14 0 chr12 19692479 19692701 -101564829 - MTE2b LTR MaLR -154 225 1 3 735 277 280 35 78 chr12 19692864 19692917 -101564613 + PB1D10 SINE Alu 5 51 -66 3 735 991 130 7 0 chr12 19692917 19693063 -101564467 - B1_Mus1 SINE Alu -1 147 1 3 735 277 280 35 78 chr12 19693063 19693125 -101564405 + PB1D10 SINE Alu 52 115 -2 3 735 295 294 50 21 chr12 19693203 19693335 -101564195 - MLT1B LTR MaLR -9 458 254 3 735 1638 139 35 11 chr12 19693336 19693619 -101563911 + MTB LTR MaLR 1 290 -110 3 735 241 266 0 0 chr12 19693624 19693688 -101563842 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 735 298 116 0 0 chr12 19693722 19693765 -101563765 + MTC LTR MaLR 92 134 -287 3 735 567 298 82 57 chr12 19694328 19694609 -101562921 - B4A SINE B4 0 292 5 3 735 310 313 113 36 chr12 19694778 19695000 -101562530 + L2b LINE L2 3004 3242 -184 3 735 613 302 13 94 chr12 19695005 19695228 -101562302 + ID_B1 SINE B4 2 208 -16 3 735 360 0 0 0 chr12 19695228 19695268 -101562262 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 735 264 208 153 0 chr12 19695479 19695551 -101561979 - MER5A1 DNA MER1_type -71 95 13 3 735 1179 94 6 0 chr12 19696053 19696212 -101561318 + B2_Mm1a SINE B2 1 160 -33 3 735 327 25 0 0 chr12 19696212 19696252 -101561278 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 3 735 1127 156 17 0 chr12 19696252 19696271 -101561259 + B2_Mm2 SINE B2 160 181 -14 3 735 456 229 32 8 chr12 19696494 19696617 -101560913 - Lx3B LINE L1 0 6973 6848 3 735 243 0 0 0 chr12 19697746 19697773 -101559757 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 735 420 243 93 29 chr12 19697775 19697915 -101559615 - B1F SINE Alu 0 149 1 3 735 516 286 57 10 chr12 19698288 19698482 -101559048 - MER63C DNA AcHobo -6 924 722 3 735 247 274 0 52 chr12 19698532 19698609 -101558921 + MER63D DNA AcHobo 537 609 -452 3 735 320 350 86 0 chr12 19698564 19698704 -101558826 - MER63C DNA AcHobo -237 693 542 3 735 773 169 22 7 chr12 19698991 19699128 -101558402 + B1_Mur1 SINE Alu 5 143 -6 3 735 721 234 74 20 chr12 19699271 19699474 -101558056 + B3 SINE B2 13 215 -1 3 735 277 277 0 0 chr12 19699482 19699547 -101557983 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 735 738 220 6 74 chr12 19699562 19699662 -101557868 + B3 SINE B2 2 99 -117 3 735 777 144 30 22 chr12 19699662 19699797 -101557733 + B1_Mus1 SINE Alu 2 137 -11 3 735 293 0 0 26 chr12 19699798 19699836 -101557694 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 735 738 220 6 74 chr12 19699836 19699895 -101557635 + B3 SINE B2 100 152 -64 3 735 180 240 0 91 chr12 19700660 19700715 -101556815 + L4 LINE RTE 1340 1389 -640 3 735 487 259 9 0 chr12 19700785 19700897 -101556633 - PB1D9 SINE Alu -6 114 2 3 735 1085 96 0 14 chr12 19700947 19701095 -101556435 + B1_Mus2 SINE Alu 2 147 0 3 735 1467 219 109 5 chr12 19701510 19701886 -101555644 - MTD LTR MaLR 0 419 5 3 735 436 333 50 25 chr12 19702112 19702352 -101555178 - MER46C DNA MER2_type -1 337 92 3 735 4428 8 0 45 chr12 19702406 19702922 -101554608 - MT2_Mm LTR ERVL 0 493 1 3 735 305 0 0 0 chr12 19702922 19702960 -101554570 - MERVL-int LTR ERVL 0 5485 5448 3 735 387 144 58 46 chr12 19702960 19703047 -101554483 - ORR1A3-int LTR MaLR -1323 640 553 3 735 5374 30 2 0 chr12 19703047 19703692 -101553838 - MERVL-int LTR ERVL -125 5360 4715 3 735 394 22 0 0 chr12 19703690 19703736 -101553794 - MERVL-int LTR ERVL -1136 4349 4304 3 735 746 62 0 0 chr12 19703746 19703842 -101553688 - MERVL-int LTR ERVL -1402 4083 3988 3 735 12092 10 0 0 chr12 19703838 19705208 -101552322 - MERVL-int LTR ERVL -1755 3730 2361 3 735 14588 23 2 0 chr12 19705205 19707025 -101550505 - MERVL-int LTR ERVL -3800 1961 1 3 735 4428 8 0 45 chr12 19707025 19707541 -101549989 - MT2_Mm LTR ERVL 0 493 1 3 735 694 204 0 0 chr12 19707541 19707654 -101549876 - B1_Mur3 SINE Alu -35 114 2 3 735 386 235 12 0 chr12 19707772 19707853 -101549677 + ID2 SINE ID 2 83 0 3 735 773 176 3 0 chr12 19707902 19708198 -101549332 + (TG)n Simple_repeat Simple_repeat 1 297 0 3 735 32 57 0 0 chr12 19709807 19709860 -101547670 + GC_rich Low_complexity Low_complexity 1 53 0 3 735 191 289 0 37 chr12 19712660 19712714 -101544816 - MIRm SINE MIR -115 161 110 3 735 731 185 95 83 chr12 19712884 19713137 -101544393 - RLTR5_Mm LTR ERV1 0 628 373 3 735 3820 281 11 5 chr12 19713347 19714469 -101543061 - MURVY-int LTR ERV1 0 7778 6651 3 735 2249 67 27 3 chr12 19714550 19714851 -101542679 + IAPLTR2b LTR ERVK 1 308 -19 3 735 3583 106 135 65 chr12 19714865 19715616 -101541914 + IAPEz-int LTR ERVK 14 995 -5486 3 735 414 88 0 0 chr12 19715616 19715673 -101541857 + B1_Mus1 SINE Alu 1 57 -91 3 735 1819 71 4 0 chr12 19715678 19715917 -101541613 + IAPEz-int LTR ERVK 2258 2497 -5183 3 735 1529 107 0 0 chr12 19715914 19716139 -101541391 + IAPEz-int LTR ERVK 4785 5009 -2671 3 735 229 233 177 85 chr12 19716142 19716283 -101541247 - MLT1E LTR MaLR -453 200 47 3 735 6820 130 24 27 chr12 19716283 19717831 -101539699 + IAPEz-int LTR ERVK 5275 6801 -20 3 735 2276 69 36 3 chr12 19717831 19718138 -101539392 + IAPLTR2b LTR ERVK 1 317 -10 3 735 22490 201 14 17 chr12 19718193 19724469 -101533061 - MURVY-int LTR ERV1 -1285 6493 7 3 735 645 179 110 85 chr12 19724470 19724756 -101532774 - RLTR5_Mm LTR ERV1 0 628 266 3 735 576 97 0 0 chr12 19725176 19725269 -101532261 + (TG)n Simple_repeat Simple_repeat 1 93 0 3 735 254 308 0 0 chr12 19725352 19725430 -101532100 - B4A SINE B4 -214 78 1 4 735 258 347 31 0 chr12 19727030 19727128 -101530402 + MER5A1 DNA MER1_type 66 166 0 4 735 198 262 11 56 chr12 19727202 19727291 -101530239 - MER5B DNA MER1_type -62 116 32 4 735 457 289 16 8 chr12 19727756 19727878 -101529652 - B3A SINE B2 -73 125 3 4 735 207 0 0 0 chr12 19728147 19728170 -101529360 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 735 1031 122 0 0 chr12 19728190 19728337 -101529193 - B1_Mm SINE Alu 0 147 1 4 735 847 191 173 0 chr12 19728389 19728614 -101528916 + Lx9 LINE L1 7381 7644 0 4 735 756 245 66 24 chr12 19728950 19729163 -101528367 - ID_B1 SINE B4 -2 222 1 4 735 265 259 133 11 chr12 19729476 19729566 -101527964 + Lx8 LINE L1 6978 7078 -395 4 735 368 143 14 0 chr12 19729674 19729744 -101527786 + GA-rich Low_complexity Low_complexity 3 73 0 4 735 266 254 121 16 chr12 19729763 19729887 -101527643 + Lx8 LINE L1 7335 7471 -2 4 735 198 100 0 104 chr12 19729959 19730026 -101527504 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 4 735 234 286 16 56 chr12 19730076 19730202 -101527328 + MT2A LTR ERVL 83 203 -330 4 735 4320 135 51 21 chr12 19730516 19731010 -101526520 - RMER17D LTR ERVK -18 871 370 4 735 597 28 0 0 chr12 19731010 19731081 -101526449 + (GGAGA)n Simple_repeat Simple_repeat 3 73 0 4 735 4320 135 51 21 chr12 19731081 19731432 -101526098 - RMER17D LTR ERVK -520 369 1 4 735 450 282 157 15 chr12 19731994 19732452 -101525078 - L1_Mur3 LINE L1 -4044 1836 1314 4 735 447 261 19 34 chr12 19732748 19732954 -101524576 - L1_Mur3 LINE L1 -6622 1106 904 4 735 274 200 24 0 chr12 19733122 19733207 -101524323 - L1_Mur3 LINE L1 -6738 990 904 4 735 300 365 52 16 chr12 19735304 19735496 -101522034 + MTD LTR MaLR 15 213 -206 4 735 1873 148 67 24 chr12 19735504 19735804 -101521726 - RLTR9D LTR ERVK -12 391 75 4 735 3124 46 15 5 chr12 19735804 19736196 -101521334 + MTA_Mm LTR MaLR 1 396 0 4 735 1873 148 67 24 chr12 19736196 19736270 -101521260 - RLTR9D LTR ERVK -329 74 1 4 735 240 302 59 44 chr12 19736328 19736463 -101521067 + MTD LTR MaLR 267 403 -16 4 735 234 91 0 0 chr12 19736479 19736512 -101521018 + (CAA)n Simple_repeat Simple_repeat 3 35 0 4 735 360 353 49 19 chr12 19736562 19736767 -101520763 + ORR1D-int LTR MaLR 81 291 -1289 4 735 207 88 0 0 chr12 19736767 19736801 -101520729 + (A)n Simple_repeat Simple_repeat 1 34 0 4 735 797 106 0 78 chr12 19736923 19737023 -101520507 - B1_Mus2 SINE Alu -5 142 52 4 735 4053 69 42 6 chr12 19737023 19737564 -101519966 - LTRIS2 LTR ERV1 0 564 4 4 735 797 106 0 78 chr12 19737564 19737617 -101519913 - B1_Mus2 SINE Alu -96 51 1 4 735 5979 236 16 10 chr12 19737624 19739034 -101518496 - Lx4B LINE L1 -4 7054 5637 4 735 1162 337 38 44 chr12 19739044 19739749 -101517781 + ORR1D-int LTR MaLR 562 1262 -108 4 735 253 267 25 41 chr12 19739852 19739973 -101517557 - Lx4B LINE L1 -4 7054 6936 4 735 246 350 65 74 chr12 19740089 19740305 -101517225 - B3 SINE B2 0 216 3 4 735 8075 188 101 30 chr12 19740399 19740548 -101516982 + MurSatRep1 Unknown Unknown 2 164 -1973 4 735 355 298 65 0 chr12 19740548 19740672 -101516858 - B1_Mur2 SINE Alu -17 132 1 4 735 8075 188 101 30 chr12 19740672 19741517 -101516013 + MurSatRep1 Unknown Unknown 165 1119 -1018 4 735 1263 115 6 0 chr12 19741517 19741699 -101515831 - B2_Mm1a SINE B2 -9 184 2 4 735 8075 188 101 30 chr12 19741699 19742695 -101514835 + MurSatRep1 Unknown Unknown 1120 2135 -2 4 735 479 305 68 42 chr12 19742832 19742892 -101514638 + MurSatRep1 Unknown Unknown 1691 1720 -417 4 735 478 250 22 22 chr12 19742892 19743031 -101514499 + MMSAT4 Satellite Satellite 30 168 0 4 735 479 305 68 42 chr12 19743031 19743860 -101513670 + MurSatRep1 Unknown Unknown 1721 2137 0 4 735 2962 96 0 2 chr12 19743916 19744322 -101513208 + L1_Mus1 LINE L1 6163 6567 0 4 735 251 308 14 70 chr12 19744333 19744351 -101513179 + MMSAT4 Satellite Satellite 34 127 -41 4 735 242 286 78 85 chr12 19744351 19744426 -101513104 + MurSatRep1 Unknown Unknown 1845 1918 -219 4 735 1180 75 0 0 chr12 19744426 19744572 -101512958 + B1_Mm SINE Alu 2 147 0 4 735 283 317 9 30 chr12 19744572 19744706 -101512824 + MMSAT4 Satellite Satellite 1 131 0 4 735 242 286 78 85 chr12 19744706 19744790 -101512740 + MurSatRep1 Unknown Unknown 1919 2136 -1 4 735 278 269 0 1 chr12 19745001 19745080 -101512450 + ORR1C2 LTR MaLR 276 363 -21 4 735 817 181 14 0 chr12 19745371 19745515 -101512015 + B1_Mus1 SINE Alu 2 147 -1 4 735 2017 250 78 10 chr12 19745781 19746709 -101510821 - L1_Mur3 LINE L1 -3798 2082 1087 4 735 480 247 47 29 chr12 19746694 19746865 -101510665 - L1_Mur3 LINE L1 -6507 1221 1048 4 735 333 0 0 0 chr12 19747403 19747440 -101510090 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 735 387 0 0 0 chr12 19747440 19747482 -101510048 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 735 387 0 0 0 chr12 19747482 19747524 -101510006 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 735 271 211 22 0 chr12 19747892 19747982 -101509548 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 735 286 226 167 0 chr12 19751421 19751505 -101506025 + PB1D10 SINE Alu 6 103 -14 4 735 930 167 0 0 chr12 19751507 19751657 -101505873 + B1_Mur4 SINE Alu 1 150 0 4 735 870 224 18 37 chr12 19751698 19751916 -101505614 + ID_B1 SINE B4 3 216 -8 4 735 271 225 41 27 chr12 19752821 19752894 -101504636 + B4A SINE B4 24 97 -195 4 735 989 105 8 0 chr12 19752900 19753033 -101504497 - B1_Mus1 SINE Alu -12 136 3 4 735 324 248 0 0 chr12 19753129 19753230 -101504300 + (CA)n Simple_repeat Simple_repeat 2 102 0 4 735 610 197 72 142 chr12 19753238 19753403 -101504127 - B3 SINE B2 -4 212 45 4 735 781 179 21 7 chr12 19753585 19753726 -101503804 - B1_Mur1 SINE Alu -6 143 1 4 735 908 307 89 111 chr12 19753971 19754682 -101502848 + MER63C DNA AcHobo 231 925 -5 4 735 392 256 85 28 chr12 19755048 19755189 -101502341 + B1F SINE Alu 1 149 0 4 735 1082 122 0 6 chr12 19755819 19756000 -101501530 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 735 1093 83 7 0 chr12 19756018 19756162 -101501368 - B1_Mm SINE Alu 0 147 3 4 735 512 176 37 0 chr12 19756702 19756810 -101500720 + Lx3B LINE L1 6862 6973 0 4 735 432 0 0 0 chr12 19757052 19757100 -101500430 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 4 735 1092 94 6 0 chr12 19757100 19757259 -101500271 - B2_Mm1a SINE B2 -33 160 1 4 735 236 194 153 0 chr12 19757754 19757826 -101499704 + MER5A1 DNA MER1_type 13 95 -71 4 735 471 301 9 87 chr12 19758053 19758271 -101499259 - ID_B1 SINE B4 -22 202 2 4 735 252 316 52 15 chr12 19758346 19758481 -101499049 - L2b LINE L2 -214 3161 3022 4 735 504 294 92 42 chr12 19758671 19758909 -101498621 + B4A SINE B4 5 254 -38 4 735 280 94 19 19 chr12 19758938 19758992 -101498538 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 735 256 139 0 0 chr12 19759536 19759579 -101497951 - MTC LTR MaLR -287 134 92 4 735 216 281 0 0 chr12 19759613 19759677 -101497853 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 735 333 102 0 0 chr12 19759800 19759849 -101497681 - MTC LTR MaLR 0 421 373 4 735 633 196 7 57 chr12 19759850 19759991 -101497539 + B1_Mus1 SINE Alu 15 148 0 4 735 667 197 83 34 chr12 19760062 19760254 -101497276 - MTC LTR MaLR -191 228 23 4 735 7911 32 32 2 chr12 19760337 19761267 -101496263 - RLTR13A2 LTR ERVK 0 958 1 4 735 21789 52 13 8 chr12 19761273 19764055 -101493475 - ETnERV3-int LTR ERVK 0 5808 3011 4 735 316 200 0 0 chr12 19764412 19764467 -101493063 - B3 SINE B2 -92 124 70 4 735 391 86 0 0 chr12 19764719 19764777 -101492753 - RMER6D LTR ERVK -662 58 1 4 735 519 288 68 0 chr12 19765149 19765281 -101492249 + RSINE1 SINE B4 21 161 -4 4 735 2218 153 21 46 chr12 19766292 19766724 -101490806 + MTC LTR MaLR 1 421 0 4 735 1401 95 16 0 chr12 19767347 19767536 -101489994 - B2_Mm2 SINE B2 -3 192 1 4 735 275 267 13 39 chr12 19767627 19767705 -101489825 - RSINE1 SINE B4 -40 125 50 4 735 990 157 0 0 chr12 19767792 19767939 -101489591 + B1_Mur1 SINE Alu 3 149 0 4 735 328 288 102 90 chr12 19768235 19768491 -101489039 + ORR1E LTR MaLR 101 359 0 4 735 507 17 0 0 chr12 19768631 19768691 -101488839 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 735 333 250 13 13 chr12 19768894 19768971 -101488559 - ID2 SINE ID -5 78 2 4 735 207 146 0 0 chr12 19769462 19769503 -101488027 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 4 735 30 45 0 0 chr12 19769528 19769572 -101487958 + AT_rich Low_complexity Low_complexity 1 44 0 4 735 1262 115 16 0 chr12 19769663 19769855 -101487675 - B2_Mm2 SINE B2 0 195 1 4 735 483 291 17 0 chr12 19769856 19769973 -101487557 - RSINE1 SINE B4 -44 121 3 4 735 477 226 10 10 chr12 19770181 19770284 -101487246 - B1_Mur2 SINE Alu -40 109 7 4 735 326 320 39 23 chr12 19770284 19770309 -101487221 - B4 SINE B4 -94 198 69 4 735 253 268 241 35 chr12 19770292 19770313 -101487217 - B3 SINE B2 -4 212 191 4 735 285 109 0 0 chr12 19770313 19770359 -101487171 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 735 265 268 241 35 chr12 19770359 19770507 -101487023 - B3A SINE B2 -26 190 8 4 735 557 239 101 38 chr12 19771163 19771372 -101486158 + ID_B1 SINE B4 3 224 0 4 735 1554 244 48 5 chr12 19772420 19772819 -101484711 - MTD LTR MaLR -3 416 1 4 735 233 339 35 0 chr12 19772819 19772934 -101484596 + RMER15 LTR ERVL 441 559 -16 4 735 1367 265 8 35 chr12 19773112 19773450 -101484080 - ORR1D2 LTR MaLR -8 362 31 4 735 1241 135 81 9 chr12 19773450 19773660 -101483870 + URR1A DNA MER1_type 2 226 0 4 735 1367 265 8 35 chr12 19773660 19773693 -101483837 - ORR1D2 LTR MaLR -340 30 1 4 735 2943 112 26 2 chr12 19775374 19775840 -101481690 + RLTR44C LTR ERVK 1 477 -25 4 735 998 217 14 0 chr12 19777453 19777665 -101479865 + B3 SINE B2 2 216 0 4 735 574 180 219 104 chr12 19777703 19777895 -101479635 - URR1B DNA MER1_type 0 225 12 4 735 189 286 117 32 chr12 19777957 19778051 -101479479 + MIRm SINE MIR 88 189 -87 4 735 1083 81 0 75 chr12 19778712 19778872 -101478658 + B1_Mus1 SINE Alu 1 148 0 4 735 219 175 0 0 chr12 19779304 19779361 -101478169 + (CCA)n Simple_repeat Simple_repeat 2 58 0 4 735 1986 177 56 33 chr12 19779420 19779812 -101477718 + MTC LTR MaLR 1 401 -20 4 735 211 207 98 0 chr12 19780378 19780443 -101477087 + L2c LINE L2 3219 3316 -71 4 735 1073 213 238 3 chr12 19780812 19781114 -101476416 + ORR1D1 LTR MaLR 1 373 -1 4 735 547 260 13 40 chr12 19781141 19781293 -101476237 + B1F SINE Alu 2 149 0 4 735 358 227 125 0 chr12 19781496 19781584 -101475946 + PB1 SINE Alu 17 115 -12 5 735 316 325 0 0 chr12 19781619 19781696 -101475834 + ID4_ SINE ID 7 83 0 5 735 47696 25 3 1 chr12 19781769 19787119 -101470411 + IAPEz-int LTR ERVK 1119 6479 -2 5 735 2766 51 0 3 chr12 19787121 19787457 -101470073 + IAPLTR1a_Mm LTR ERVK 1 335 -2 5 735 706 126 194 198 chr12 19787761 19787988 -101469542 - URR1A DNA MER1_type 0 226 1 5 735 348 281 0 10 chr12 19788029 19788133 -101469397 + (TCCA)n Simple_repeat Simple_repeat 4 106 0 5 735 911 224 15 19 chr12 19788395 19788600 -101468930 + B3 SINE B2 2 205 -11 5 735 1722 189 97 3 chr12 19789130 19789491 -101468039 - MTD LTR MaLR 0 419 25 5 735 3992 242 49 56 chr12 19789500 19790666 -101466864 - MTD-int LTR MaLR -1 1257 100 5 735 21 57 0 0 chr12 19790669 19790704 -101466826 + AT_rich Low_complexity Low_complexity 1 35 0 5 735 317 259 35 53 chr12 19790741 19790804 -101466726 - PB1D10 SINE Alu -1 116 52 5 735 949 130 0 20 chr12 19790804 19790953 -101466577 + B1_Mus1 SINE Alu 1 146 -2 5 735 317 259 35 53 chr12 19790953 19791003 -101466527 - PB1D10 SINE Alu -66 51 5 5 735 212 235 78 0 chr12 19790969 19791020 -101466510 - B4A SINE B4 -169 123 69 5 735 769 306 11 0 chr12 19791166 19791352 -101466178 + MTE2b LTR MaLR 1 188 -191 5 735 1688 98 31 12 chr12 19791338 19791596 -101465934 - MTB LTR MaLR -137 263 1 5 735 238 271 68 86 chr12 19791790 19791853 -101465677 - PB1D9 SINE Alu -1 119 52 5 91 980 130 7 0 chr12 19791853 19791999 -101465531 + B1_Mus1 SINE Alu 1 147 -1 5 736 238 271 68 86 chr12 19791999 19792052 -101465478 - PB1D9 SINE Alu -69 51 6 5 736 940 265 13 61 chr12 19792215 19792488 -101465042 + MTEa LTR MaLR 1 257 -122 5 736 2365 171 76 0 chr12 19792725 19793186 -101464344 - RLTR1 LTR ERV1 0 624 129 5 736 214 287 115 0 chr12 19793444 19793531 -101463999 + MIR SINE MIR 50 146 -62 5 736 278 258 118 87 chr12 19794546 19794775 -101462755 + RMER10A LTR ERVL 65 300 -142 5 736 593 155 0 9 chr12 19794778 19794889 -101462641 + CT-rich Low_complexity Low_complexity 4 113 0 5 736 663 46 0 0 chr12 19795142 19795229 -101462301 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 736 482 246 139 14 chr12 19795242 19795386 -101462144 - RSINE1 SINE B4 -2 163 2 5 736 5895 73 35 19 chr12 19795908 19796030 -101461500 + RLTR13C2 LTR ERVK 1 128 -680 5 736 1420 89 5 10 chr12 19796030 19796223 -101461307 + B2_Mm1t SINE B2 1 192 -1 5 736 5895 73 35 19 chr12 19796223 19796895 -101460635 + RLTR13C2 LTR ERVK 129 808 0 5 736 1575 234 52 40 chr12 19797002 19797197 -101460333 + MTD LTR MaLR 1 191 -228 5 736 738 276 28 32 chr12 19797197 19797414 -101460116 + B3 SINE B2 1 216 0 5 736 1575 235 55 41 chr12 19797414 19797629 -101459901 + MTD LTR MaLR 192 405 -14 5 736 827 136 2 41 chr12 19797997 19798150 -101459380 + B1_Mus1 SINE Alu 6 150 0 5 736 227 205 48 0 chr12 19798152 19798235 -101459295 + (CAAA)n Simple_repeat Simple_repeat 1 87 0 5 736 624 246 89 79 chr12 19798243 19798433 -101459097 + B3 SINE B2 2 193 -23 5 736 339 44 0 0 chr12 19798504 19798549 -101458981 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 736 712 218 19 25 chr12 19798570 19798730 -101458800 - B3A SINE B2 -38 160 2 5 736 539 234 28 7 chr12 19798747 19798889 -101458641 + L1MD2 LINE L1 5422 5566 -676 5 736 1416 172 179 137 chr12 19798890 19799344 -101458186 + MT2A LTR ERVL 1 462 -71 5 736 249 281 27 127 chr12 19799256 19799366 -101458164 + RMER21A LTR ERV1 576 674 -273 5 736 3649 83 28 12 chr12 19799444 19799645 -101457885 - RLTR1B LTR ERV1 0 512 304 5 736 639 0 0 0 chr12 19799645 19799716 -101457814 + (CTGGGG)n Simple_repeat Simple_repeat 1 71 0 5 736 3649 83 28 12 chr12 19799716 19800016 -101457514 - RLTR1B LTR ERV1 -209 303 3 5 736 802 136 8 8 chr12 19800018 19800151 -101457379 - RMER17D2 LTR ERVK -4 805 673 5 736 757 83 37 0 chr12 19800154 19800262 -101457268 - RMER17D2 LTR ERVK -687 122 11 5 736 356 310 177 0 chr12 19800280 19800393 -101457137 + RSINE1 SINE B4 4 136 -29 5 736 509 339 34 17 chr12 19800443 19800677 -101456853 + L1MD2 LINE L1 5597 5834 -525 5 736 315 0 0 0 chr12 19800708 19800743 -101456787 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 736 522 0 0 0 chr12 19800743 19800800 -101456730 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 736 1034 101 0 0 chr12 19800862 19801000 -101456530 - B1_Mus1 SINE Alu -10 138 1 5 736 252 59 0 0 chr12 19801020 19801054 -101456476 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 736 624 318 10 50 chr12 19801055 19801254 -101456276 - ID_B1 SINE B4 -11 213 23 5 736 708 188 14 21 chr12 19801462 19801603 -101455927 + RLTR46 LTR ERVK 1 140 -180 5 736 430 296 47 36 chr12 19801647 19801840 -101455690 + RLTR46 LTR ERVK 126 320 0 5 736 348 43 0 0 chr12 19803849 19803895 -101453635 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 736 2943 37 3 0 chr12 19803895 19804248 -101453282 + MTA_Mm LTR MaLR 4 357 -39 5 736 2636 50 9 6 chr12 19804248 19804572 -101452958 - IAPLTR2b LTR ERVK 0 327 3 5 736 6744 62 13 11 chr12 19804576 19805430 -101452100 - IAPEz-int LTR ERVK -2 6479 5624 5 736 12305 31 2 1 chr12 19805414 19806806 -101450724 - IAPEz-int LTR ERVK -3729 2752 1359 5 736 4803 68 31 14 chr12 19806806 19807449 -101450081 - IAPEz-int LTR ERVK -5819 662 9 5 736 2655 49 9 6 chr12 19807450 19807776 -101449754 - IAPLTR2b LTR ERVK 0 327 1 5 736 402 0 0 0 chr12 19807776 19807821 -101449709 + MTA_Mm LTR MaLR 356 400 0 5 736 8810 59 3 0 chr12 19807821 19808916 -101448614 + MTA_Mm-int LTR MaLR 1 1098 0 5 736 3324 56 2 0 chr12 19808916 19809311 -101448219 + MTA_Mm LTR MaLR 1 396 0 5 736 230 100 0 39 chr12 19809325 19809377 -101448153 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 5 736 1093 85 6 6 chr12 19809555 19809732 -101447798 + (TC)n Simple_repeat Simple_repeat 2 178 0 5 736 255 325 94 31 chr12 19809800 19809927 -101447603 - MLT1F2 LTR MaLR -284 276 142 5 736 727 206 28 0 chr12 19810016 19810157 -101447373 - B1_Mus1 SINE Alu -1 147 3 5 736 622 133 0 67 chr12 19810503 19810696 -101446834 + C-rich Low_complexity Low_complexity 1 180 0 5 736 846 176 168 11 chr12 19811565 19811755 -101445775 - URR1A DNA MER1_type -6 220 1 5 736 745 281 24 37 chr12 19811755 19812045 -101445485 + MTE2a LTR MaLR 35 374 -5 5 736 311 242 3 32 chr12 19812554 19812654 -101444876 + MT2A LTR ERVL 9 105 -496 5 736 243 340 68 14 chr12 19812903 19813049 -101444481 + RMER15 LTR ERVL 416 569 -6 5 736 180 274 12 141 chr12 19813062 19813147 -101444383 - MIRb SINE MIR -112 156 83 5 736 962 106 0 7 chr12 19813741 19813884 -101443646 + URR1B DNA MER1_type 83 224 -1 5 736 616 293 52 42 chr12 19814167 19814455 -101443075 - B4A SINE B4 0 292 2 5 736 378 0 0 0 chr12 19814633 19814675 -101442855 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 736 219 343 94 38 chr12 19815720 19815826 -101441704 + MIRb SINE MIR 2 113 -155 5 736 340 317 29 0 chr12 19815840 19815944 -101441586 - PB1D7 SINE Alu -6 114 8 5 736 196 278 103 17 chr12 19816136 19816253 -101441277 - L2c LINE L2 -223 3164 3038 5 736 811 234 29 17 chr12 19816333 19816507 -101441023 + B3A SINE B2 3 178 -20 5 736 608 263 0 42 chr12 19817060 19817261 -101440269 - B3 SINE B2 0 195 15 5 736 436 250 73 24 chr12 19817292 19817415 -101440115 - B1F1 SINE Alu 0 149 21 5 736 465 198 12 0 chr12 19817413 19817494 -101440036 - RSINE1 SINE B4 -31 134 53 5 736 407 205 0 0 chr12 19817499 19817577 -101439953 - PB1D10 SINE Alu 0 117 40 5 736 595 119 0 0 chr12 19817659 19817743 -101439787 + B2_Mm2 SINE B2 3 86 -109 5 736 402 21 0 0 chr12 19817743 19817790 -101439740 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 736 2618 111 7 25 chr12 19817871 19818011 -101439519 + RLTR9E LTR ERVK 3 140 -269 5 736 3001 88 98 57 chr12 19818011 19818503 -101439027 - RLTR1B LTR ERV1 0 512 1 5 736 2618 111 7 25 chr12 19818503 19818770 -101438760 + RLTR9E LTR ERVK 141 403 -6 5 736 4680 218 31 34 chr12 19818777 19819055 -101438475 + ETnERV2-int LTR ERVK 2 283 -3031 5 736 1232 53 18 6 chr12 19819055 19819226 -101438304 - L1Md_F2 LINE L1 -3 6579 6407 5 736 4680 218 31 34 chr12 19819226 19820006 -101437524 + ETnERV2-int LTR ERVK 284 1056 -2258 5 736 3107 24 73 40 chr12 19820006 19820404 -101437126 - IAPLTR2a LTR ERVK 0 411 1 5 736 14475 68 9 6 chr12 19820406 19822224 -101435306 - IAPEz-int LTR ERVK -2 6479 4656 5 736 1936 67 4 0 chr12 19822223 19822462 -101435068 - IAPEY3-int LTR ERVK -5183 2497 2258 5 736 424 53 0 0 chr12 19822467 19822524 -101435006 - B1_Mus1 SINE Alu -91 57 1 5 736 5470 67 76 59 chr12 19822524 19823338 -101434192 - IAPEz-int LTR ERVK -5486 995 168 5 736 262 296 0 0 chr12 19823338 19823392 -101434138 - RLTR27 LTR ERVK -34 275 222 5 736 265 65 0 0 chr12 19823392 19823423 -101434107 - IAPEz-int LTR ERVK -1786 201 171 5 736 230 184 0 0 chr12 19823423 19823461 -101434069 - RLTR27 LTR ERVK -41 268 231 5 736 1059 126 25 81 chr12 19823469 19823667 -101433863 - IAPEz-int LTR ERVK -6286 195 9 5 736 2852 22 151 0 chr12 19823668 19824025 -101433505 - IAPLTR2a LTR ERVK 0 411 1 5 736 15375 211 43 31 chr12 19824025 19828706 -101428824 + ETnERV2-int LTR ERVK 1052 6429 -977 5 736 356 115 22 133 chr12 19828902 19828992 -101428538 + ETnERV2-int LTR ERVK 7327 7406 0 5 736 2610 115 7 12 chr12 19828992 19829398 -101428132 + RLTR9E LTR ERVK 1 404 -5 5 736 492 187 58 102 chr12 19829405 19829542 -101427988 + ETnERV2-int LTR ERVK 2 132 -3182 5 736 519 102 0 0 chr12 19830941 19831029 -101426501 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 736 198 0 0 0 chr12 19831029 19831051 -101426479 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 736 293 333 39 79 chr12 19831051 19831178 -101426352 - RSINE1 SINE B4 -10 155 34 5 736 783 219 171 103 chr12 19831285 19831595 -101425935 - MTE2a LTR MaLR -14 365 35 5 736 1391 162 0 5 chr12 19831598 19831821 -101425709 - URR1B DNA MER1_type -3 222 1 5 736 934 152 14 0 chr12 19831852 19831997 -101425533 + B1_Mus1 SINE Alu 1 147 -1 5 736 735 233 99 11 chr12 19832025 19832216 -101425314 + B3 SINE B2 3 210 -6 5 736 263 125 102 20 chr12 19832247 19832296 -101425234 - MTE2a LTR MaLR -326 53 1 5 736 2005 157 14 148 chr12 19833374 19833484 -101424046 + MTC LTR MaLR 1 103 -318 5 736 252 77 0 0 chr12 19833484 19833523 -101424007 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 736 2005 157 14 148 chr12 19833523 19833580 -101423950 + MTC LTR MaLR 104 107 -314 5 736 755 156 49 21 chr12 19833580 19833724 -101423806 - B1_Mur3 SINE Alu 0 149 2 5 736 2005 157 14 148 chr12 19833724 19834041 -101423489 + MTC LTR MaLR 108 421 0 5 736 188 327 72 9 chr12 19834046 19834157 -101423373 - MIRb SINE MIR -128 140 23 5 736 221 208 0 40 chr12 19834263 19834313 -101423217 + C-rich Low_complexity Low_complexity 3 50 0 5 736 722 233 0 0 chr12 19834998 19835127 -101422403 - RSINE1 SINE B4 -34 131 3 5 736 749 241 50 25 chr12 19835354 19835554 -101421976 - B4A SINE B4 -86 206 2 5 736 1397 143 9 18 chr12 19836373 19836601 -101420929 - URR1A DNA MER1_type 0 226 1 5 736 588 189 56 32 chr12 19837682 19837808 -101419722 + B1_Mur3 SINE Alu 9 137 -12 5 736 360 77 0 0 chr12 19837818 19837870 -101419660 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 736 612 98 0 0 chr12 19837873 19837975 -101419555 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 736 2389 86 0 51 chr12 19838201 19838555 -101418975 - RLTR10D LTR ERVK -23 336 1 5 736 4270 78 7 0 chr12 19838555 19839095 -101418435 - IAP-d-int LTR ERVK 0 6542 5999 5 736 4870 50 12 0 chr12 19839095 19839681 -101417849 + L1Md_T LINE L1 5989 6581 -1 5 736 1801 85 15 55 chr12 19839681 19839955 -101417575 - IAP-d-int LTR ERVK -6279 263 1 5 736 2590 98 0 45 chr12 19839955 19840331 -101417199 - RLTR10D LTR ERVK 0 359 1 5 736 361 252 77 17 chr12 19840331 19840448 -101417082 - ID_B1 SINE B4 -27 197 74 5 736 895 81 8 0 chr12 19840475 19840598 -101416932 - B1_Mm SINE Alu 0 147 24 6 736 678 221 113 26 chr12 19840677 19840872 -101416658 - B3 SINE B2 0 216 5 6 736 358 214 29 0 chr12 19841071 19841174 -101416356 + GA-rich Low_complexity Low_complexity 3 108 0 6 736 1535 63 0 0 chr12 19841642 19841831 -101415699 - IAP-d-int LTR ERVK -6337 205 17 6 736 274 269 121 40 chr12 19841832 19841847 -101415683 - B1F SINE Alu -15 134 120 6 736 2587 98 0 45 chr12 19841847 19842223 -101415307 - RLTR10D LTR ERVK 0 359 1 6 736 274 269 121 40 chr12 19842223 19842331 -101415199 - B1F SINE Alu -30 119 1 6 736 213 108 0 0 chr12 19842341 19842378 -101415152 + (T)n Simple_repeat Simple_repeat 1 37 0 6 736 918 65 8 0 chr12 19842382 19842505 -101415025 - B1_Mm SINE Alu 0 147 24 6 736 598 273 32 27 chr12 19842584 19842772 -101414758 - B3 SINE B2 0 216 28 6 736 438 225 0 9 chr12 19842902 19843016 -101414514 + PB1D7 SINE Alu 9 120 0 6 736 380 191 11 0 chr12 19843722 19843811 -101413719 + GA-rich Low_complexity Low_complexity 1 90 0 6 736 381 43 0 0 chr12 19844754 19844801 -101412729 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 736 8747 248 32 34 chr12 19845977 19849655 -101407875 + MMERGLN-int LTR ERV1 3962 7778 0 6 736 2264 195 15 41 chr12 19849731 19850192 -101407338 + RLTR1D LTR ERV1 157 605 0 6 736 210 217 0 0 chr12 19851453 19851522 -101406008 + CT-rich Low_complexity Low_complexity 1 69 0 6 736 1127 174 27 5 chr12 19851735 19851954 -101405576 + URR1B DNA MER1_type 1 224 -1 6 736 252 308 38 23 chr12 19852005 19852138 -101405392 + MER33 DNA MER1_type 190 324 0 6 736 188 86 0 28 chr12 19852598 19852634 -101404896 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 6 736 491 297 25 19 chr12 19852658 19852816 -101404714 + RSINE1 SINE B4 1 159 -6 6 736 207 0 0 0 chr12 19853285 19853308 -101404222 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 6 736 459 0 0 0 chr12 19853535 19853586 -101403944 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 736 2415 74 0 69 chr12 19853597 19853944 -101403586 - ORR1A2 LTR MaLR -4 323 1 6 736 276 188 0 0 chr12 19853978 19854042 -101403488 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 736 989 124 0 0 chr12 19854124 19854261 -101403269 - B1_Mur4 SINE Alu -13 137 1 6 736 432 335 30 0 chr12 19854303 19854467 -101403063 - B3A SINE B2 -28 170 2 6 736 646 303 10 67 chr12 19854484 19854693 -101402837 - B4A SINE B4 -72 220 24 6 736 219 194 15 75 chr12 19854638 19854705 -101402825 - ID4_ SINE ID -9 74 12 6 736 880 193 32 42 chr12 19855596 19855812 -101401718 - ID_B1 SINE B4 -8 216 3 6 736 735 201 7 20 chr12 19855841 19855988 -101401542 - B1_Mur4 SINE Alu -5 145 1 6 736 347 308 33 77 chr12 19855988 19856024 -101401506 - ID_B1 SINE B4 -5 219 45 6 736 220 247 127 25 chr12 19855990 19856069 -101401461 - PB1D10 SINE Alu -14 103 17 6 736 206 313 75 38 chr12 19857938 19858071 -101399459 + L2a LINE L2 3098 3235 -191 6 736 217 226 12 12 chr12 19859522 19859607 -101397923 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 736 256 297 132 37 chr12 19860185 19860374 -101397156 - MIRc SINE MIR -60 208 2 6 736 719 282 24 0 chr12 19860765 19860935 -101396595 - B3A SINE B2 -23 175 2 6 736 2158 99 59 9 chr12 19860946 19861283 -101396247 - L1_Mus3 LINE L1 -8 6630 6277 6 736 4492 16 0 0 chr12 19861283 19861776 -101395754 - MT2_Mm LTR ERVL 0 493 1 6 736 379 190 267 0 chr12 19861789 19861905 -101395625 - L1MC1 LINE L1 0 6333 6187 6 736 260 234 45 45 chr12 19862413 19862525 -101395005 + L1M1 LINE L1 5788 5899 -401 6 736 441 203 18 18 chr12 19862529 19862757 -101394773 + (TG)n Simple_repeat Simple_repeat 1 228 0 6 736 451 198 11 43 chr12 19862784 19862969 -101394561 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 736 219 209 8 17 chr12 19863269 19863386 -101394144 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 6 736 201 39 0 0 chr12 19863494 19863520 -101394010 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 6 736 1043 110 0 0 chr12 19863526 19863672 -101393858 - B1_Mm SINE Alu -1 146 1 6 736 541 332 38 19 chr12 19863673 19863882 -101393648 - RLTR11A2 LTR ERVK -181 346 134 6 736 723 124 0 0 chr12 19864065 19864178 -101393352 + (TGGA)n Simple_repeat Simple_repeat 4 116 0 6 736 289 222 0 23 chr12 19864182 19864448 -101393082 + (TA)n Simple_repeat Simple_repeat 1 259 0 6 736 337 202 0 12 chr12 19864490 19864570 -101392960 + Lx2B LINE L1 6625 6703 -297 6 736 214 223 87 118 chr12 19864583 19864710 -101392820 + B2_Mm1a SINE B2 71 193 0 6 736 414 0 0 0 chr12 19864726 19864772 -101392758 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 736 297 0 0 0 chr12 19864772 19864804 -101392726 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 736 624 124 0 0 chr12 19864937 19865042 -101392488 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 6 736 283 202 0 16 chr12 19865046 19865172 -101392358 + (TA)n Simple_repeat Simple_repeat 1 124 0 6 736 230 95 24 0 chr12 19865204 19865246 -101392284 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 6 736 664 210 52 8 chr12 19865319 19865488 -101392042 + Lx2B LINE L1 6625 6800 -176 6 736 24 32 0 0 chr12 19865504 19865535 -101391995 + AT_rich Low_complexity Low_complexity 1 31 0 6 736 234 91 0 0 chr12 19865556 19865589 -101391941 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 736 285 29 0 0 chr12 19865589 19865622 -101391908 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 736 2292 251 54 42 chr12 19866178 19867323 -101390207 + L1_Mur2 LINE L1 1002 2127 -3753 6 736 17680 49 3 1 chr12 19867520 19870397 -101387133 - L1Md_F2 LINE L1 -3 6579 3695 6 736 296 32 3 0 chr12 19870394 19870436 -101387094 + L1M4 LINE L1 3683 3744 -2402 6 736 747 190 21 0 chr12 19870447 19870589 -101386941 - B1_Mus1 SINE Alu -2 146 2 6 736 273 275 0 0 chr12 19870883 19870952 -101386578 - ORR1C2 LTR MaLR -14 370 302 6 736 401 259 5 5 chr12 19871202 19871341 -101386189 - MMSAT4 Satellite Satellite -71 139 1 6 736 269 317 21 21 chr12 19871210 19871355 -101386175 - MurSatRep1 Unknown Unknown -88 2049 1905 6 736 3062 86 0 2 chr12 19871360 19871766 -101385764 - L1_Mus1 LINE L1 0 6567 6163 6 736 560 310 53 37 chr12 19871811 19871907 -101385623 - MurSatRep1 Unknown Unknown 0 2137 2101 6 736 408 281 11 11 chr12 19871907 19872118 -101385412 - MMSAT4 Satellite Satellite -12 211 1 6 736 560 310 53 37 chr12 19872118 19873198 -101384332 - MurSatRep1 Unknown Unknown 0 2100 1691 6 736 7573 197 97 50 chr12 19873239 19873824 -101383706 - MurSatRep1 Unknown Unknown -2 2135 1560 6 736 1296 14 7 0 chr12 19873824 19873970 -101383560 + B1_Mm SINE Alu 1 147 0 6 736 7573 197 97 50 chr12 19873970 19874431 -101383099 - MurSatRep1 Unknown Unknown -578 1559 1127 6 736 1244 120 5 0 chr12 19874431 19874615 -101382915 + B2_Mm1a SINE B2 2 186 -7 6 736 7573 197 97 50 chr12 19874615 19875456 -101382074 - MurSatRep1 Unknown Unknown -1011 1126 177 6 736 334 314 65 0 chr12 19875456 19875580 -101381950 + B1_Mur2 SINE Alu 1 132 -17 6 736 7573 197 97 50 chr12 19875580 19875729 -101381801 - MurSatRep1 Unknown Unknown -1961 176 3 6 736 265 246 33 50 chr12 19876149 19876269 -101381261 + Lx4B LINE L1 6937 7054 -4 6 736 815 256 21 50 chr12 19876372 19876614 -101380916 - ORR1D-int LTR MaLR -108 1262 1028 6 736 1960 40 4 8 chr12 19876668 19876920 -101380610 - MTA_Mm LTR MaLR -145 251 1 6 736 1416 197 94 10 chr12 19876920 19877226 -101380304 + RLTR9D LTR ERVK 70 401 -2 6 736 444 355 52 16 chr12 19877226 19877418 -101380112 - MTD LTR MaLR -206 213 15 6 736 4170 44 6 0 chr12 19878765 19879269 -101378261 - L1Md_F3 LINE L1 -14 6570 6064 6 736 370 264 18 6 chr12 19879982 19880146 -101377384 + L1_Mur3 LINE L1 904 1069 -6659 6 736 423 271 100 0 chr12 19880482 19880711 -101376819 + L1_Mur3 LINE L1 1314 1565 -4315 6 736 511 234 9 117 chr12 19880724 19880937 -101376593 + L1_Mur3 LINE L1 1647 1836 -4044 6 736 5064 117 24 52 chr12 19881428 19882340 -101375190 + RMER17D LTR ERVK 1 887 -2 6 736 556 176 203 0 chr12 19883152 19883334 -101374196 - Lx9 LINE L1 -1 7643 7425 6 736 950 104 20 46 chr12 19883405 19883540 -101373990 + B1_Mus2 SINE Alu 1 137 -10 6 736 221 0 0 33 chr12 19883540 19883570 -101373960 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6 736 950 104 20 46 chr12 19883570 19883585 -101373945 + B1_Mus2 SINE Alu 138 147 0 6 736 482 258 137 30 chr12 19883873 19884041 -101373489 + B3A SINE B2 3 188 -10 6 736 228 229 22 67 chr12 19884458 19884547 -101372983 + MER5B DNA MER1_type 32 116 -62 6 736 319 303 20 0 chr12 19884621 19884720 -101372810 - MER5A1 DNA MER1_type 0 166 66 6 736 297 375 15 30 chr12 19884785 19884917 -101372613 + MER3 DNA MER1_type 3 132 -77 6 736 852 164 0 0 chr12 19890013 19890276 -101367254 + (CA)n Simple_repeat Simple_repeat 1 263 0 6 736 345 247 12 0 chr12 19890339 19890420 -101367110 - ID2 SINE ID 0 83 2 6 736 791 204 0 14 chr12 19890539 19890683 -101366847 + B1_Mur3 SINE Alu 2 143 -6 6 736 453 336 46 21 chr12 19890701 19890941 -101366589 + MER46C DNA MER2_type 92 337 -1 6 736 1406 223 100 8 chr12 19891167 19891547 -101365983 + MTD LTR MaLR 5 419 0 6 736 902 92 34 34 chr12 19891968 19892115 -101365415 - B1_Mus1 SINE Alu 0 148 2 6 736 288 219 280 27 chr12 19892115 19892190 -101365340 - B2_Mm2 SINE B2 -96 99 6 6 736 279 272 0 0 chr12 19892198 19892301 -101365229 + (CA)n Simple_repeat Simple_repeat 2 104 0 6 736 683 210 204 0 chr12 19892322 19892489 -101365041 - B3 SINE B2 -15 201 1 6 736 752 186 21 7 chr12 19892660 19892801 -101364729 - B1_Mur1 SINE Alu -6 143 1 6 736 1178 312 87 115 chr12 19893063 19893776 -101363754 + MER63C DNA AcHobo 233 925 -5 6 736 456 241 85 28 chr12 19894144 19894285 -101363245 + B1F SINE Alu 1 149 0 6 736 1104 62 0 0 chr12 19894910 19895055 -101362475 + (TTTC)n Simple_repeat Simple_repeat 1 145 0 6 736 1107 90 7 0 chr12 19895057 19895201 -101362329 - B1_Mm SINE Alu 0 147 3 6 736 445 191 29 0 chr12 19895740 19895845 -101361685 + Lx3C LINE L1 6862 6969 -7 7 736 183 42 0 0 chr12 19896181 19896205 -101361325 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 7 736 1113 108 13 0 chr12 19896205 19896363 -101361167 - B2_Mm1a SINE B2 -33 160 1 7 736 266 194 153 0 chr12 19896858 19896930 -101360600 + MER5A1 DNA MER1_type 13 95 -71 7 736 591 294 9 86 chr12 19897158 19897378 -101360152 - ID_B1 SINE B4 -20 204 2 7 736 307 321 108 31 chr12 19897383 19897605 -101359925 - L2b LINE L2 -184 3242 3004 7 736 714 289 77 67 chr12 19898274 19898559 -101358971 + B4A SINE B4 5 292 0 7 736 459 0 0 0 chr12 19898569 19898620 -101358910 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 736 330 26 0 0 chr12 19898620 19898658 -101358872 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 736 306 93 0 0 chr12 19899199 19899242 -101358288 - MTC LTR MaLR -287 134 92 7 736 1512 215 90 82 chr12 19899463 19899509 -101358021 - MTD LTR MaLR 0 419 377 7 736 669 176 40 53 chr12 19899509 19899659 -101357871 + B1_Mus1 SINE Alu 1 148 0 7 736 1512 215 90 82 chr12 19899659 19900013 -101357517 - MTD LTR MaLR -43 376 16 7 736 467 45 15 0 chr12 19900155 19900221 -101357309 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 7 736 572 265 0 13 chr12 19900401 19900550 -101356980 + B1_Mm SINE Alu 1 147 0 7 736 4562 8 0 0 chr12 19900599 19901092 -101356438 + MT2_Mm LTR ERVL 1 493 0 7 736 48334 16 8 0 chr12 19901092 19906412 -101351118 + MERVL-int LTR ERVL 1 5360 -125 7 736 393 144 58 46 chr12 19906412 19906499 -101351031 + ORR1A3-int LTR MaLR 553 640 -1323 7 736 319 0 0 0 chr12 19906499 19906537 -101350993 + MERVL-int LTR ERVL 5448 5485 0 7 736 4562 8 0 0 chr12 19906537 19907030 -101350500 + MT2_Mm LTR ERVL 1 493 0 7 736 306 233 0 0 chr12 19907422 19907482 -101350048 - B3 SINE B2 -87 129 70 7 736 430 85 0 0 chr12 19907733 19907792 -101349738 - RMER6D LTR ERVK -661 59 1 7 736 237 279 74 25 chr12 19907792 19907866 -101349664 - B4A SINE B4 -212 80 3 7 736 551 296 68 0 chr12 19908156 19908288 -101349242 + RSINE1 SINE B4 21 161 -4 7 736 2385 143 19 45 chr12 19909293 19909719 -101347811 + MTC LTR MaLR 1 415 -6 7 736 1251 135 16 10 chr12 19910348 19910542 -101346988 - B2_Mm2 SINE B2 0 195 1 7 736 294 206 39 52 chr12 19910625 19910702 -101346828 - RSINE1 SINE B4 -40 125 50 7 736 996 157 0 0 chr12 19910789 19910936 -101346594 + B1_Mur1 SINE Alu 3 149 0 7 736 368 298 228 39 chr12 19911171 19911482 -101346048 + ORR1D2 LTR MaLR 1 370 0 7 736 184 326 122 44 chr12 19911490 19911580 -101345950 + L2b LINE L2 3228 3324 -51 7 736 192 40 0 0 chr12 19911620 19911645 -101345885 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 736 350 237 13 13 chr12 19911857 19911934 -101345596 - ID2 SINE ID -5 78 2 7 736 198 171 0 0 chr12 19912424 19912465 -101345065 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 7 736 23 68 0 0 chr12 19912490 19912534 -101344996 + AT_rich Low_complexity Low_complexity 1 44 0 7 736 291 349 48 113 chr12 19912554 19912625 -101344905 - RSINE1 SINE B4 -6 159 89 7 736 1257 104 16 5 chr12 19912625 19912818 -101344712 - B2_Mm2 SINE B2 0 195 1 7 736 291 349 48 113 chr12 19912818 19912914 -101344616 - RSINE1 SINE B4 -77 88 3 7 736 604 176 10 10 chr12 19913119 19913222 -101344308 - B1_Mur2 SINE Alu -40 109 7 7 736 279 306 54 36 chr12 19913123 19913235 -101344295 - B4A SINE B4 -98 194 81 7 736 254 288 86 81 chr12 19913229 19913251 -101344279 - B2_Mm1t SINE B2 -9 184 163 7 736 249 119 0 0 chr12 19913251 19913293 -101344237 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 736 411 254 224 28 chr12 19913293 19913446 -101344084 - B3 SINE B2 -29 187 8 7 736 598 289 86 24 chr12 19914101 19914310 -101343220 + ID_B1 SINE B4 3 224 0 7 736 1786 234 45 2 chr12 19915359 19915757 -101341773 - MTD LTR MaLR -3 416 2 7 736 300 328 35 0 chr12 19915757 19915873 -101341657 + RMER15 LTR ERVL 440 559 -16 7 736 1374 286 8 40 chr12 19916046 19916387 -101341143 - ORR1D2 LTR MaLR -4 366 34 7 736 1160 127 102 10 chr12 19916387 19916593 -101340937 + URR1B DNA MER1_type 1 225 0 7 736 1374 286 8 40 chr12 19916593 19916629 -101340901 - ORR1D2 LTR MaLR -337 33 1 7 736 183 268 252 20 chr12 19918121 19918220 -101339310 - MIR3 SINE MIR -84 124 3 7 736 262 294 0 61 chr12 19918868 19918966 -101338564 - MLT1K LTR MaLR 0 595 504 7 736 210 264 117 32 chr12 19919836 19919930 -101337600 + MIRm SINE MIR 88 189 -87 7 736 1133 68 0 45 chr12 19920593 19920748 -101336782 + B1_Mus1 SINE Alu 1 148 0 7 736 222 62 0 0 chr12 19920748 19920780 -101336750 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 7 736 240 158 0 0 chr12 19921197 19921254 -101336276 + (CCA)n Simple_repeat Simple_repeat 2 58 0 7 736 2206 134 62 16 chr12 19921313 19921684 -101335846 + MTC LTR MaLR 1 388 -33 7 736 211 207 98 0 chr12 19922264 19922329 -101335201 + L2c LINE L2 3219 3316 -71 7 11 1054 203 242 7 chr12 19922698 19923000 -101334530 + ORR1D1 LTR MaLR 1 373 -1 7 737 547 260 13 40 chr12 19923027 19923179 -101334351 + B1F SINE Alu 2 149 0 7 737 358 227 125 0 chr12 19923382 19923470 -101334060 + PB1 SINE Alu 17 115 -12 7 737 338 312 0 0 chr12 19923505 19923582 -101333948 + ID4_ SINE ID 7 83 0 7 737 751 135 219 114 chr12 19923931 19924053 -101333477 - URR1A DNA MER1_type -2 224 113 7 737 983 112 28 0 chr12 19924053 19924196 -101333334 - B1_Mm SINE Alu 0 147 1 7 737 751 135 219 114 chr12 19924196 19924274 -101333256 - URR1A DNA MER1_type -114 112 3 7 737 180 257 0 0 chr12 19924333 19924403 -101333127 + (TCCA)n Simple_repeat Simple_repeat 3 72 0 7 737 838 252 10 24 chr12 19924685 19924892 -101332638 + B3 SINE B2 2 205 -11 7 737 1817 189 82 0 chr12 19925400 19925765 -101331765 - MTD LTR MaLR 0 419 25 7 737 4503 228 46 55 chr12 19925778 19926945 -101330585 - MTD-int LTR MaLR -6 1252 96 7 737 715 224 218 31 chr12 19927003 19927354 -101330176 + MTD LTR MaLR 3 419 0 7 737 485 230 45 51 chr12 19927361 19927517 -101330013 + MTD-int LTR MaLR 2 156 -1102 7 737 589 280 38 6 chr12 19927662 19927820 -101329710 + RSINE1 SINE B4 3 165 0 7 737 857 164 7 0 chr12 19927960 19928106 -101329424 - B1_Mus1 SINE Alu -1 147 1 7 737 898 189 0 13 chr12 19928154 19928304 -101329226 + B1_Mur1 SINE Alu 2 149 0 7 737 325 224 45 0 chr12 19928322 19928389 -101329141 + ID4_ SINE ID 8 77 -6 7 737 311 271 59 0 chr12 19928389 19928407 -101329123 + ID_B1 SINE B4 8 97 -127 7 737 869 75 0 15 chr12 19928437 19928573 -101328957 + (TAGA)n Simple_repeat Simple_repeat 4 137 0 7 737 528 122 0 0 chr12 19928581 19928663 -101328867 + (GA)n Simple_repeat Simple_repeat 2 83 0 7 737 586 238 142 24 chr12 19929153 19929364 -101328166 - B4A SINE B4 -54 238 3 7 737 351 299 54 150 chr12 19929393 19929503 -101328027 + MLT1B LTR MaLR 165 253 -137 7 737 2745 75 39 5 chr12 19929503 19929890 -101327640 - MTB LTR MaLR 0 400 1 7 737 351 299 54 150 chr12 19929890 19930019 -101327511 + MLT1B LTR MaLR 254 381 -9 7 737 299 271 35 78 chr12 19930098 19930160 -101327370 - PB1D10 SINE Alu -2 115 52 7 737 1000 123 7 0 chr12 19930160 19930306 -101327224 + B1_Mus1 SINE Alu 1 147 -1 7 737 299 271 35 78 chr12 19930306 19930359 -101327171 - PB1D10 SINE Alu -66 51 5 7 737 305 235 103 0 chr12 19930319 19930387 -101327143 - ID_B1 SINE B4 -99 125 51 7 737 952 286 13 0 chr12 19930522 19930746 -101326784 + MTD LTR MaLR 1 227 -152 7 737 215 286 54 0 chr12 19931224 19931280 -101326250 + MIRm SINE MIR 97 155 -121 7 737 323 61 41 0 chr12 19931631 19931680 -101325850 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 7 737 406 243 63 42 chr12 19931707 19931849 -101325681 - MLT1N2 LTR MaLR -5 557 413 7 737 348 249 159 62 chr12 19932433 19932609 -101324921 + RMER10A LTR ERVL 65 257 -185 7 737 686 44 11 0 chr12 19932616 19932706 -101324824 + (TC)n Simple_repeat Simple_repeat 2 92 0 7 737 1573 125 35 8 chr12 19932706 19932965 -101324565 + RMER17A LTR ERVK 419 684 -67 7 737 474 264 141 14 chr12 19933011 19933153 -101324377 - RSINE1 SINE B4 -4 161 2 7 737 799 230 119 35 chr12 19933787 19933982 -101323548 + MTC LTR MaLR 1 217 -204 7 737 830 276 28 14 chr12 19933982 19934195 -101323335 + B3 SINE B2 1 216 0 7 737 965 227 40 20 chr12 19934206 19934423 -101323107 + MTD LTR MaLR 196 405 -14 7 737 767 166 0 67 chr12 19934796 19934945 -101322585 + B1_Mus1 SINE Alu 10 148 0 7 737 226 167 37 37 chr12 19934948 19935029 -101322501 + (CAAA)n Simple_repeat Simple_repeat 3 83 0 7 737 676 221 76 70 chr12 19935043 19935228 -101322302 + B3 SINE B2 8 193 -23 7 737 778 251 15 25 chr12 19935270 19935299 -101322231 - B3A SINE B2 0 198 172 7 737 267 54 0 0 chr12 19935299 19935336 -101322194 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 737 778 251 15 25 chr12 19935336 19935506 -101322024 - B3A SINE B2 -27 171 1 7 737 516 259 20 0 chr12 19935519 19935666 -101321864 + L1MD2 LINE L1 5417 5566 -676 7 737 1410 186 182 120 chr12 19935667 19936041 -101321489 + MT2A LTR ERVL 1 497 -58 7 737 238 299 0 139 chr12 19936041 19936142 -101321388 + RMER21B LTR ERV1 471 557 -285 7 737 1410 186 182 120 chr12 19936142 19936174 -101321356 + MT2A LTR ERVL 498 542 -13 7 737 4587 132 30 6 chr12 19936211 19936372 -101321158 - RMER17D2 LTR ERVK 0 809 643 7 737 267 31 0 0 chr12 19936372 19936404 -101321126 + (TGG)n Simple_repeat Simple_repeat 2 33 0 7 737 4587 132 30 6 chr12 19936404 19937032 -101320498 - RMER17D2 LTR ERVK -167 642 2 7 737 405 255 189 0 chr12 19937039 19937145 -101320385 + RSINE1 SINE B4 4 129 -36 7 737 468 323 191 8 chr12 19937202 19937458 -101320072 + L1MD2 LINE L1 5597 5899 -460 7 737 510 61 0 0 chr12 19937460 19937526 -101320004 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 737 4420 12 0 20 chr12 19937587 19938090 -101319440 - MT2_Mm LTR ERVL 0 493 1 7 737 319 0 0 0 chr12 19938090 19938128 -101319402 - MERVL-int LTR ERVL 0 5485 5448 7 737 356 139 26 53 chr12 19938128 19938204 -101319326 - ORR1A3-int LTR MaLR -1323 640 567 7 737 48374 17 8 0 chr12 19938204 19943535 -101313995 - MERVL-int LTR ERVL -114 5371 1 7 737 4420 12 0 20 chr12 19943535 19944038 -101313492 - MT2_Mm LTR ERVL 0 493 1 7 737 977 123 0 0 chr12 19944047 19944185 -101313345 - B1_Mus1 SINE Alu -10 138 1 7 737 186 43 0 0 chr12 19944208 19944231 -101313299 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 737 717 267 14 46 chr12 19944235 19944451 -101313079 - ID_B1 SINE B4 -14 210 2 7 737 812 39 10 0 chr12 19946373 19946477 -101311053 + (TCTCCC)n Simple_repeat Simple_repeat 5 109 0 7 737 427 214 141 33 chr12 19946482 19946603 -101310927 - B1_Mus2 SINE Alu -13 134 1 8 737 789 208 88 10 chr12 19946631 19946825 -101310705 - B3 SINE B2 -5 211 3 8 737 260 320 60 106 chr12 19947048 19947247 -101310283 - MLT1F2 LTR MaLR -226 334 145 8 737 408 116 11 23 chr12 19947300 19947388 -101310142 + (TTTA)n Simple_repeat Simple_repeat 1 87 0 8 737 796 179 36 0 chr12 19947388 19947528 -101310002 - B1_Mus1 SINE Alu -1 147 3 8 737 424 158 0 21 chr12 19947867 19947964 -101309566 + C-rich Low_complexity Low_complexity 2 96 0 8 737 313 93 0 0 chr12 19948532 19948575 -101308955 + URR1B DNA MER1_type 183 225 0 8 737 728 290 41 38 chr12 19948856 19949146 -101308384 - B4A SINE B4 0 292 2 8 737 285 89 0 0 chr12 19949324 19949369 -101308161 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 737 253 345 0 12 chr12 19950477 19950562 -101306968 + MIRc SINE MIR 32 115 -153 8 737 377 296 37 0 chr12 19950570 19950678 -101306852 - PB1D7 SINE Alu -6 114 3 8 737 650 234 10 36 chr12 19950868 19951059 -101306471 - B3 SINE B2 0 195 15 8 737 417 287 51 17 chr12 19951096 19951213 -101306317 - B1F1 SINE Alu -8 141 21 8 737 2839 41 2 139 chr12 19951222 19951674 -101305856 + RLTR10 LTR ERVK 1 390 0 8 737 16514 32 12 39 chr12 19951676 19953713 -101303817 + RLTR10-int LTR ERVK 3 1984 -3 8 737 2839 41 2 139 chr12 19953715 19954167 -101303363 + RLTR10 LTR ERVK 1 390 0 8 737 406 200 13 0 chr12 19954168 19954243 -101303287 - RSINE1 SINE B4 -37 128 53 8 737 308 291 0 0 chr12 19954248 19954334 -101303196 - PB1D10 SINE Alu 0 117 32 8 737 673 48 0 0 chr12 19954417 19954501 -101303029 + B2_Mm2 SINE B2 3 86 -109 8 737 492 18 0 0 chr12 19954501 19954558 -101302972 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 737 519 151 20 61 chr12 19954558 19954572 -101302958 + B3A SINE B2 89 97 -101 8 737 202 234 0 41 chr12 19955852 19955901 -101301629 + CT-rich Low_complexity Low_complexity 4 50 0 8 737 638 213 49 21 chr12 19955905 19956049 -101301481 - B1_Mur3 SINE Alu 0 149 2 8 737 1940 148 10 10 chr12 19956052 19956366 -101301164 + MTC LTR MaLR 108 421 0 8 737 445 348 38 13 chr12 19957027 19957263 -101300267 - MER46C DNA MER2_type -1 337 96 8 737 854 152 7 14 chr12 19957284 19957424 -101300106 - B1_Mur3 SINE Alu -6 143 5 8 737 359 235 12 0 chr12 19957539 19957620 -101299910 + ID2 SINE ID 2 83 0 8 737 346 155 17 0 chr12 19957669 19957727 -101299803 - HAL1-3A_ME LINE L1 -831 2027 1969 8 737 786 167 0 0 chr12 19957757 19957937 -101299593 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 737 748 150 9 0 chr12 19957952 19958186 -101299344 + (TG)n Simple_repeat Simple_repeat 1 236 0 8 737 3115 49 200 9 chr12 19959189 19959619 -101297911 - RLTR1B LTR ERV1 0 512 1 8 737 207 246 0 0 chr12 19960276 19960337 -101297193 + (CGG)n Simple_repeat Simple_repeat 3 63 0 8 737 203 264 65 23 chr12 19962911 19962997 -101294533 - MIRm SINE MIR -115 161 59 8 737 486 0 0 0 chr12 19963374 19963428 -101294102 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 737 245 266 25 137 chr12 19963428 19963583 -101293947 - B4A SINE B4 -26 139 1 8 737 276 365 23 31 chr12 19965104 19965234 -101292296 - MER3 DNA MER1_type -78 131 3 8 737 330 308 32 83 chr12 19965241 19965397 -101292133 + MER5A1 DNA MER1_type 19 166 0 8 737 191 289 11 67 chr12 19965471 19965560 -101291970 - MER5B DNA MER1_type -63 115 32 8 737 217 213 229 0 chr12 19966483 19966544 -101290986 - B1F1 SINE Alu -49 100 26 8 737 672 318 96 29 chr12 19966579 19966955 -101290575 - Charlie4a DNA MER1_type -96 412 12 8 737 261 242 151 21 chr12 19967122 19967215 -101290315 - RLTR25A LTR ERVK -477 626 522 8 737 786 125 8 16 chr12 19967138 19967260 -101290270 - B1_Mus2 SINE Alu -26 121 1 8 737 850 191 173 0 chr12 19967312 19967537 -101289993 + Lx9 LINE L1 7381 7644 0 8 737 779 232 70 28 chr12 19967874 19968087 -101289443 - ID_B1 SINE B4 -2 222 1 8 737 242 320 118 20 chr12 19968388 19968490 -101289040 + Lx8 LINE L1 6967 7078 -395 8 737 263 106 0 41 chr12 19968591 19968640 -101288890 + (GGA)n Simple_repeat Simple_repeat 3 49 0 8 737 265 231 129 24 chr12 19968659 19968783 -101288747 + Lx8 LINE L1 7335 7471 -2 8 737 219 83 0 104 chr12 19968855 19968922 -101288608 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 8 737 432 324 31 98 chr12 19968961 19969372 -101288158 + MT2A LTR ERVL 74 601 0 8 737 5207 107 45 42 chr12 19969778 19970662 -101286868 - RMER17D LTR ERVK -2 887 1 8 737 2681 77 143 141 chr12 19971174 19971685 -101285845 - RLTR1B LTR ERV1 0 512 1 8 737 403 272 208 59 chr12 19971739 19972194 -101285336 - L1_Mur3 LINE L1 -4044 1836 1314 8 737 456 259 39 48 chr12 19972491 19972722 -101284808 - L1_Mur3 LINE L1 -6622 1106 878 8 737 328 346 29 22 chr12 19974837 19974976 -101282554 + MTD LTR MaLR 74 213 -206 8 737 512 237 34 8 chr12 19974976 19975095 -101282435 - RLTR9D LTR ERVK -2 401 280 8 737 681 45 0 63 chr12 19975090 19975110 -101282420 - RLTR9D LTR ERVK -314 89 75 8 737 3172 56 5 5 chr12 19975110 19975506 -101282024 + MTA_Mm LTR MaLR 1 396 0 8 737 681 45 0 63 chr12 19975506 19975580 -101281950 - RLTR9D LTR ERVK -329 74 1 8 737 239 350 55 6 chr12 19975582 19975750 -101281780 + MTD LTR MaLR 192 380 -39 8 737 216 97 0 0 chr12 19975784 19975815 -101281715 + (CAA)n Simple_repeat Simple_repeat 3 33 0 8 737 586 336 62 41 chr12 19975834 19976139 -101281391 + ORR1D-int LTR MaLR 24 361 -1219 8 737 4924 234 83 18 chr12 19976180 19977512 -101280018 - Lx4B LINE L1 -4 7054 5637 8 737 1509 325 35 58 chr12 19977522 19978240 -101279290 + ORR1D-int LTR MaLR 562 1262 -108 8 737 203 194 0 0 chr12 19978299 19978335 -101279195 + T-rich Low_complexity Low_complexity 1 36 0 8 737 258 264 18 45 chr12 19978344 19978455 -101279075 - Lx4B LINE L1 -4 7054 6947 8 737 284 335 90 45 chr12 19978581 19978781 -101278749 - B3 SINE B2 0 216 8 8 737 645 211 14 0 chr12 19978888 19979035 -101278495 + MurSatRep1 Unknown Unknown 2 150 -1987 8 737 348 306 65 0 chr12 19979037 19979161 -101278369 - B1_Mur2 SINE Alu -17 132 1 8 737 7993 197 35 33 chr12 19979161 19980007 -101277523 + MurSatRep1 Unknown Unknown 284 1126 -1011 8 737 1148 148 6 0 chr12 19980007 19980190 -101277340 - B2_Mm1a SINE B2 -8 185 2 8 737 7993 197 35 33 chr12 19980190 19981192 -101276338 + MurSatRep1 Unknown Unknown 1127 2135 -2 8 737 307 365 23 23 chr12 19981233 19981533 -101275997 + MurSatRep1 Unknown Unknown 1750 2049 -88 8 737 447 276 20 20 chr12 19981389 19981775 -101275755 + MMSAT4 Satellite Satellite 1 386 0 8 737 467 309 67 43 chr12 19981769 19982289 -101275241 + MurSatRep1 Unknown Unknown 1691 2137 0 8 737 489 279 6 7 chr12 19982132 19983124 -101274406 + MMSAT4 Satellite Satellite 1 991 0 8 737 264 291 42 137 chr12 19982994 19983174 -101274356 + MurSatRep1 Unknown Unknown 1747 1921 -216 8 737 2946 101 0 2 chr12 19983174 19983580 -101273950 + L1_Mus1 LINE L1 6163 6567 0 8 737 264 291 42 137 chr12 19983580 19983734 -101273796 + MurSatRep1 Unknown Unknown 1922 2049 -88 8 737 378 259 5 5 chr12 19983603 19983738 -101273792 + MMSAT4 Satellite Satellite 1 135 0 8 737 272 250 0 59 chr12 19983978 19984063 -101273467 + ORR1C2 LTR MaLR 291 370 -14 8 737 924 132 21 0 chr12 19984355 19984499 -101273031 + B1_Mus1 SINE Alu 2 148 0 8 737 296 35 0 0 chr12 19984506 19984548 -101272982 - L1M4 LINE L1 -2402 3744 3680 8 737 2502 21 0 0 chr12 19984545 19984835 -101272695 + L1_Mm LINE L1 3695 3984 -1899 8 737 843 160 21 0 chr12 19984863 19985007 -101272523 + B1_Mus1 SINE Alu 2 148 0 8 737 2111 250 64 41 chr12 19985191 19985638 -101271892 - L1_Mur3 LINE L1 -3738 2142 1706 8 737 3586 13 2 2 chr12 19985638 19986034 -101271496 + MTA_Mm LTR MaLR 1 396 0 8 737 2111 245 56 25 chr12 19986034 19986603 -101270927 - L1_Mur3 LINE L1 -4175 1705 1088 8 737 473 265 29 35 chr12 19986588 19986760 -101270770 - L1_Mur3 LINE L1 -6510 1218 1048 8 737 351 150 0 0 chr12 19987329 19987389 -101270141 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 737 230 207 87 119 chr12 19987404 19987530 -101270000 - B2_Mm1a SINE B2 -1 192 71 8 737 328 215 0 12 chr12 19987543 19987623 -101269907 - Lx2B LINE L1 -297 6703 6625 8 737 376 221 25 0 chr12 19987665 19987787 -101269743 + (TCTA)n Simple_repeat Simple_repeat 1 125 0 8 737 368 186 11 28 chr12 19987790 19987972 -101269558 + (TA)n Simple_repeat Simple_repeat 1 179 0 8 737 351 44 0 0 chr12 19987976 19988021 -101269509 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 8 737 538 299 43 20 chr12 19988205 19988414 -101269116 + RLTR11A2 LTR ERVK 132 346 -181 8 737 1010 129 0 0 chr12 19988414 19988561 -101268969 + B1_Mm SINE Alu 1 147 0 8 737 458 324 42 103 chr12 19988561 19988681 -101268849 + RLTR11A2 LTR ERVK 334 441 -87 8 737 196 209 0 21 chr12 19988707 19988800 -101268730 + (TTATA)n Simple_repeat Simple_repeat 2 92 0 8 737 515 192 18 6 chr12 19989103 19989271 -101268259 + (CA)n Simple_repeat Simple_repeat 1 170 0 8 737 436 212 30 0 chr12 19989329 19989572 -101267958 + (CA)n Simple_repeat Simple_repeat 1 250 0 8 737 233 243 45 45 chr12 19989576 19989688 -101267842 - L1M1 LINE L1 -401 5899 5788 8 737 387 197 256 0 chr12 19990201 19990318 -101267212 + L1MC1 LINE L1 6187 6333 0 8 737 2161 99 60 9 chr12 19990328 19990664 -101266866 + L1_Mus3 LINE L1 6279 6631 -7 8 737 688 288 24 0 chr12 19990675 19990845 -101266685 + B3A SINE B2 2 175 -23 8 737 247 315 95 47 chr12 19991232 19991422 -101266108 + MIRb SINE MIR 4 202 -66 8 737 310 244 13 13 chr12 19991998 19992077 -101265453 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 737 197 307 83 45 chr12 19993528 19993661 -101263869 - L2a LINE L2 -191 3235 3098 8 737 239 262 162 0 chr12 19995539 19995619 -101261911 + PB1D10 SINE Alu 12 104 -13 8 737 846 160 7 20 chr12 19995620 19995767 -101261763 + B1_Mur4 SINE Alu 1 145 -5 8 737 840 203 32 42 chr12 19995796 19996012 -101261518 + ID_B1 SINE B4 3 216 -8 8 737 526 311 19 72 chr12 19996915 19997123 -101260407 + B4A SINE B4 24 220 -72 8 737 531 308 52 0 chr12 19997140 19997312 -101260218 + B3A SINE B2 2 182 -16 8 737 925 146 0 0 chr12 19997346 19997483 -101260047 + B1_Mur4 SINE Alu 1 137 -13 8 737 570 229 0 0 chr12 19997593 19997772 -101259758 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 737 2320 99 0 58 chr12 19997799 19998142 -101259388 + ORR1A2 LTR MaLR 1 323 -4 8 737 330 143 0 0 chr12 19998153 19998216 -101259314 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 737 1041 8 0 0 chr12 19998217 19998335 -101259195 + (GAGAA)n Simple_repeat Simple_repeat 1 118 0 9 737 497 269 37 31 chr12 19999022 19999183 -101258347 - RSINE1 SINE B4 -3 162 1 9 737 216 74 35 53 chr12 19999207 19999264 -101258266 + A-rich Low_complexity Low_complexity 4 59 0 9 737 719 85 19 0 chr12 19999890 19999996 -101257534 - URR1B DNA MER1_type -1 224 117 9 737 339 278 55 9 chr12 20000000 20000109 -101257421 - URR1A DNA MER1_type -112 114 1 1 737 222 179 0 0 chr12 20000322 20000378 -101257152 + GA-rich Low_complexity Low_complexity 1 56 0 2 737 2197 188 26 40 chr12 20001641 20002095 -101255435 - RLTR1D LTR ERV1 -1 604 157 3 737 453 36 0 0 chr12 20003242 20003297 -101254233 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 737 380 130 14 0 chr12 20004283 20004352 -101253178 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 5 737 6864 67 4 0 chr12 20004941 20005781 -101251749 + IAP-d-int LTR ERVK 5700 6542 0 6 737 2432 75 3 48 chr12 20005781 20006133 -101251397 + RLTR10D LTR ERVK 1 336 -23 6 737 231 140 0 0 chr12 20006365 20006415 -101251115 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 737 592 208 46 35 chr12 20006457 20006596 -101250934 - B1_Mur3 SINE Alu -3 144 10 8 737 704 200 8 0 chr12 20006629 20006754 -101250776 - ID_B1 SINE B4 -7 217 92 9 737 1323 152 9 18 chr12 20008258 20008486 -101249044 + URR1A DNA MER1_type 1 226 0 1 737 705 253 55 30 chr12 20009307 20009507 -101248023 + B4A SINE B4 2 206 -86 1 737 678 264 0 0 chr12 20009735 20009864 -101247666 + RSINE1 SINE B4 3 131 -34 1 737 234 320 0 26 chr12 20009999 20010076 -101247454 - MER2 DNA MER2_type -263 82 8 1 737 234 264 0 40 chr12 20010519 20010594 -101246936 + G-rich Low_complexity Low_complexity 5 76 0 1 737 207 303 80 27 chr12 20010692 20010804 -101246726 + MIRb SINE MIR 23 140 -128 1 737 2011 121 23 10 chr12 20010809 20011119 -101246411 - MTC LTR MaLR 0 421 108 1 737 693 190 40 47 chr12 20011122 20011271 -101246259 + B1_Mur3 SINE Alu 2 149 0 1 737 207 161 0 0 chr12 20011275 20011306 -101246224 + polypurine Low_complexity Low_complexity 4 34 0 1 737 204 40 0 0 chr12 20011307 20011332 -101246198 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 737 1080 38 0 0 chr12 20011332 20011464 -101246066 + (GA)n Simple_repeat Simple_repeat 2 134 0 2 737 571 228 18 0 chr12 20011464 20011578 -101245952 - MTC LTR MaLR -305 116 1 1 737 207 350 100 0 chr12 20012294 20012394 -101245136 + MIRb SINE MIR 114 223 -45 1 737 261 167 83 0 chr12 20012668 20012716 -101244814 + MTE2a LTR MaLR 1 52 -327 2 737 35 0 0 0 chr12 20012720 20012755 -101244775 + AT_rich Low_complexity Low_complexity 1 35 0 2 737 858 201 99 11 chr12 20012764 20012955 -101244575 - B3 SINE B2 -6 210 3 2 737 879 172 14 0 chr12 20012985 20013130 -101244400 - B1_Mus1 SINE Alu -1 147 1 2 737 1380 162 0 5 chr12 20013161 20013384 -101244146 + URR1B DNA MER1_type 1 222 -3 2 737 759 239 149 75 chr12 20013387 20013695 -101243835 + MTE2a LTR MaLR 35 365 -14 2 737 290 330 21 54 chr12 20013802 20013895 -101243635 + RSINE1 SINE B4 34 123 -42 2 737 249 33 0 0 chr12 20013929 20013959 -101243571 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 737 921 19 0 0 chr12 20013959 20014065 -101243465 + (GA)n Simple_repeat Simple_repeat 1 107 0 2 737 182 388 12 0 chr12 20015246 20015326 -101242204 - L2c LINE L2 -9 3378 3298 2 737 2683 110 5 20 chr12 20015439 20015848 -101241682 - RLTR9E LTR ERVK -6 403 1 3 737 401 215 20 61 chr12 20015911 20015925 -101241605 - B3A SINE B2 -101 97 89 3 737 366 23 0 0 chr12 20015925 20015968 -101241562 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 737 546 131 0 0 chr12 20015968 20016052 -101241478 - B2_Mm2 SINE B2 -109 86 3 3 737 371 231 0 0 chr12 20016134 20016212 -101241318 + PB1D10 SINE Alu 40 117 0 3 737 428 213 13 0 chr12 20016217 20016292 -101241238 + RSINE1 SINE B4 53 128 -37 3 737 461 233 73 24 chr12 20016296 20016419 -101241111 + B1F1 SINE Alu 21 149 0 3 737 613 210 75 102 chr12 20016450 20016636 -101240894 + B3 SINE B2 15 195 0 3 737 332 343 88 50 chr12 20017615 20017876 -101239654 + L1MD2 LINE L1 6084 6354 -5 3 737 779 265 46 46 chr12 20017888 20018169 -101239361 + B4A SINE B4 2 282 -10 3 737 935 148 175 0 chr12 20018460 20018649 -101238881 - URR1B DNA MER1_type 0 225 4 4 737 283 254 0 29 chr12 20019720 20019789 -101237741 - MT2A LTR ERVL -458 75 9 4 737 904 259 8 57 chr12 20020277 20020566 -101236964 - MTE2b LTR MaLR -7 372 42 4 737 681 194 169 50 chr12 20020566 20020767 -101236763 + URR1A DNA MER1_type 1 225 -1 4 737 904 251 9 65 chr12 20020767 20020811 -101236719 - MTE2b LTR MaLR -338 41 1 4 737 461 141 0 12 chr12 20021616 20021702 -101235828 + G-rich Low_complexity Low_complexity 2 86 0 4 737 761 163 39 0 chr12 20022042 20022171 -101235359 + B1_Mus1 SINE Alu 3 136 -12 4 737 527 0 0 16 chr12 20022171 20022235 -101235295 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 4 737 309 247 120 150 chr12 20022295 20022495 -101235035 + MLT1F1 LTR MaLR 141 334 -235 4 737 763 216 99 10 chr12 20022714 20022906 -101234624 + B3 SINE B2 3 211 -5 4 737 362 239 182 9 chr12 20022931 20023041 -101234489 + B1_Mur2 SINE Alu 1 129 -20 4 737 780 11 0 0 chr12 20023058 20023147 -101234383 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 737 432 164 0 0 chr12 20023298 20023408 -101234122 + CT-rich Low_complexity Low_complexity 2 111 0 5 737 192 40 0 0 chr12 20023408 20023433 -101234097 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 737 180 250 110 33 chr12 20024508 20024599 -101232931 + L2 LINE L2 2102 2199 -1220 5 737 759 265 14 60 chr12 20025638 20025855 -101231675 + ID_B1 SINE B4 3 209 -15 5 737 186 43 0 0 chr12 20025860 20025883 -101231647 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 737 1059 101 0 0 chr12 20025906 20026044 -101231486 + B1_Mus1 SINE Alu 1 138 -10 5 737 339 25 0 0 chr12 20026117 20026157 -101231373 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 737 387 0 0 0 chr12 20026157 20026199 -101231331 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 737 492 354 37 0 chr12 20026252 20026467 -101231063 - L1MD LINE L1 -540 5819 5597 5 737 392 292 177 0 chr12 20026517 20026630 -101230900 - RSINE1 SINE B4 -29 136 4 6 737 847 76 34 0 chr12 20026637 20026755 -101230775 + RMER17D2 LTR ERVK 1 122 -687 6 737 845 98 8 8 chr12 20026758 20026891 -101230639 + RMER17D2 LTR ERVK 673 805 -4 6 737 3915 70 0 54 chr12 20026891 20027042 -101230488 + RLTR1B LTR ERV1 1 144 -368 6 737 1214 62 0 0 chr12 20027042 20027188 -101230342 + B1_Mus2 SINE Alu 2 147 0 6 737 3915 70 0 54 chr12 20027188 20027577 -101229953 + RLTR1B LTR ERV1 145 512 0 6 737 246 296 0 137 chr12 20027655 20027757 -101229773 - RMER21A LTR ERV1 -273 674 587 6 737 1471 165 180 140 chr12 20027687 20028131 -101229399 - MT2A LTR ERVL -71 462 1 6 737 330 350 14 0 chr12 20028132 20028275 -101229255 - L1MD LINE L1 -2429 5566 5422 5 737 710 259 24 0 chr12 20028292 20028458 -101229072 + B3A SINE B2 1 170 -28 6 737 432 0 0 0 chr12 20028468 20028516 -101229014 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 737 618 244 85 64 chr12 20028587 20028775 -101228755 - B3 SINE B2 -23 193 2 6 737 230 175 36 36 chr12 20028783 20028866 -101228664 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 6 737 805 151 0 67 chr12 20028868 20029017 -101228513 - B1_Mus1 SINE Alu 0 148 10 7 737 946 222 43 19 chr12 20029402 20029609 -101227921 - MTD LTR MaLR -14 405 194 7 737 805 279 37 33 chr12 20029625 20029840 -101227690 - B3 SINE B2 0 216 1 7 737 797 193 111 24 chr12 20029840 20030035 -101227495 - MTD LTR MaLR -206 213 1 7 737 6109 68 33 5 chr12 20030154 20030940 -101226590 - RLTR13C2 LTR ERVK 0 808 1 7 737 544 241 115 20 chr12 20031462 20031610 -101225920 + RSINE1 SINE B4 2 163 -2 7 737 289 219 92 82 chr12 20031736 20031920 -101225610 - RMER10A LTR ERVL 0 442 257 7 737 404 248 81 86 chr12 20031914 20032148 -101225382 - RMER10A LTR ERVL -144 298 66 7 737 381 330 34 43 chr12 20032591 20032800 -101224730 + MLT1N2 LTR MaLR 351 557 -5 7 737 226 273 73 0 chr12 20033200 20033255 -101224275 - MIRm SINE MIR -121 155 97 7 737 2204 195 76 2 chr12 20033548 20034010 -101223520 + RLTR1 LTR ERV1 129 624 0 7 737 207 98 195 0 chr12 20034031 20034072 -101223458 - L3 LINE CR1 -3526 963 915 7 737 967 281 13 0 chr12 20034283 20034507 -101223023 - MTEa LTR MaLR -152 227 1 8 737 275 242 121 0 chr12 20034643 20034709 -101222821 + ID_B1 SINE B4 52 125 -99 8 737 302 245 37 84 chr12 20034679 20034722 -101222808 + PB1D10 SINE Alu 15 51 -66 8 737 991 123 7 0 chr12 20034722 20034868 -101222662 - B1_Mus1 SINE Alu -1 147 1 8 737 302 245 37 84 chr12 20034868 20034931 -101222599 + PB1D10 SINE Alu 52 116 -1 8 737 4067 239 56 54 chr12 20034997 20036156 -101221374 + MTD-int LTR MaLR 92 1252 -6 8 737 1620 207 88 6 chr12 20036169 20036534 -101220996 + MTD LTR MaLR 25 419 0 8 737 850 222 29 29 chr12 20037068 20037272 -101220258 - B3 SINE B2 -11 205 2 8 737 208 281 0 0 chr12 20037542 20037599 -101219931 + (TGGA)n Simple_repeat Simple_repeat 3 59 0 8 737 775 166 115 101 chr12 20037645 20037725 -101219805 + URR1A DNA MER1_type 1 101 -125 8 737 1071 104 0 0 chr12 20037725 20037869 -101219661 + B1_Mm SINE Alu 1 144 -3 8 737 775 166 115 101 chr12 20037869 20037996 -101219534 + URR1A DNA MER1_type 102 211 -15 8 737 366 286 11 21 chr12 20038460 20038553 -101218977 - PB1D10 SINE Alu -13 104 13 8 737 538 267 13 40 chr12 20038752 20038904 -101218626 - B1F SINE Alu 0 149 2 9 737 1324 209 161 6 chr12 20038931 20039254 -101218276 - ORR1D1 LTR MaLR -1 373 1 9 737 4682 62 5 2 chr12 20039570 20040155 -101217375 - LTRIS_Mus LTR ERV1 0 587 1 9 737 18756 71 1 27 chr12 20040155 20042601 -101214929 - MuRRS-int LTR ERV1 0 4690 2308 9 737 6824 85 8 20 chr12 20042596 20043681 -101213849 - MuRRS-int LTR ERV1 -3180 1510 143 9 737 1252 299 22 41 chr12 20044577 20044613 -101212917 + ORR1D2 LTR MaLR 1 33 -337 9 737 1194 148 81 9 chr12 20044613 20044824 -101212706 - URR1A DNA MER1_type 0 226 1 9 737 1252 299 22 41 chr12 20044824 20045156 -101212374 + ORR1D2 LTR MaLR 34 362 -8 9 737 267 345 35 0 chr12 20045332 20045448 -101212082 - RMER15 LTR ERVL -16 559 440 9 737 1745 247 45 5 chr12 20045448 20045847 -101211683 + MTD LTR MaLR 2 416 -3 9 737 539 235 103 36 chr12 20046913 20047107 -101210423 - ID_B1 SINE B4 -15 209 3 9 737 391 264 183 15 chr12 20047750 20047881 -101209649 + B3A SINE B2 8 160 -38 9 737 657 110 0 0 chr12 20047901 20048001 -101209529 + (CA)n Simple_repeat Simple_repeat 1 100 0 9 737 538 190 20 10 chr12 20048030 20048131 -101209399 + B1_Mur2 SINE Alu 8 109 -40 1 737 275 65 0 21 chr12 20048241 20048288 -101209242 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 1 737 1250 55 0 0 chr12 20048288 20048434 -101209096 - B1_Mus2 SINE Alu -1 146 1 1 737 523 263 18 0 chr12 20048540 20048654 -101208876 + RSINE1 SINE B4 3 118 -47 1 737 240 111 0 0 chr12 20048654 20048690 -101208840 + (A)n Simple_repeat Simple_repeat 1 36 0 1 737 1229 109 16 0 chr12 20048702 20048894 -101208636 + B2_Mm2 SINE B2 1 195 0 1 737 23 68 0 0 chr12 20048984 20049028 -101208502 + AT_rich Low_complexity Low_complexity 1 44 0 1 737 207 146 0 0 chr12 20049053 20049094 -101208436 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 1 737 341 225 14 14 chr12 20049584 20049656 -101207874 + ID2 SINE ID 2 73 -10 1 737 423 0 0 0 chr12 20049871 20049918 -101207612 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 737 356 297 103 95 chr12 20050040 20050282 -101207248 - ORR1E LTR MaLR 0 359 116 1 737 976 167 0 0 chr12 20050586 20050730 -101206800 - B1_Mur1 SINE Alu -3 146 3 1 737 376 263 82 31 chr12 20050817 20050915 -101206615 + RSINE1 SINE B4 50 152 -13 1 737 1278 127 16 0 chr12 20050986 20051175 -101206355 + B2_Mm2 SINE B2 1 192 -3 1 737 181 310 109 50 chr12 20051281 20051400 -101206130 - L2 LINE L2 -503 2916 2791 1 737 2499 140 16 42 chr12 20051805 20052231 -101205299 - MTC LTR MaLR -6 415 1 1 737 542 280 72 0 chr12 20053249 20053374 -101204156 - RSINE1 SINE B4 -10 155 22 1 737 211 291 74 25 chr12 20053674 20053748 -101203782 + B4A SINE B4 3 80 -212 1 737 431 85 0 0 chr12 20053748 20053807 -101203723 + RMER6D LTR ERVK 1 59 -661 1 738 356 217 0 0 chr12 20054058 20054118 -101203412 + B3 SINE B2 70 129 -87 1 738 234 128 26 0 chr12 20054285 20054324 -101203206 + MLT1C LTR MaLR 149 188 -279 1 738 541 267 7 14 chr12 20054563 20054711 -101202819 - B1_Mm SINE Alu 0 147 1 1 738 503 43 14 0 chr12 20054891 20054961 -101202569 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1 738 1544 196 87 107 chr12 20055103 20055468 -101202062 + MTD LTR MaLR 16 376 -43 1 738 660 197 35 35 chr12 20055468 20055610 -101201920 - B1_Mus1 SINE Alu -6 142 1 1 738 1544 196 87 107 chr12 20055610 20055656 -101201874 + MTD LTR MaLR 377 419 0 1 738 3556 10 10 0 chr12 20055851 20056243 -101201287 + MTA_Mm LTR MaLR 1 396 0 1 738 9387 33 2 1 chr12 20056243 20057340 -101200190 + MTA_Mm-int LTR MaLR 1 1098 0 1 738 3529 13 10 0 chr12 20057340 20057732 -101199798 + MTA_Mm LTR MaLR 1 396 0 1 738 285 93 0 0 chr12 20057763 20057806 -101199724 + MTC LTR MaLR 92 134 -287 1 738 265 82 20 20 chr12 20058349 20058399 -101199131 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 738 587 276 92 42 chr12 20058428 20058666 -101198864 - B4A SINE B4 -38 254 5 1 738 518 268 81 0 chr12 20058794 20058917 -101198613 + ETnERV2-int LTR ERVK 7070 7202 -204 1 738 308 316 108 31 chr12 20059347 20059569 -101197961 + L2b LINE L2 3004 3242 -184 1 738 504 263 50 128 chr12 20059574 20059792 -101197738 + ID_B1 SINE B4 2 202 -22 1 738 254 194 153 0 chr12 20060024 20060096 -101197434 - MER5A1 DNA MER1_type -71 95 13 1 738 1013 119 6 0 chr12 20060591 20060750 -101196780 + B2_Mm1a SINE B2 1 160 -33 1 738 468 0 0 0 chr12 20060750 20060802 -101196728 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 1 738 519 180 32 8 chr12 20061044 20061167 -101196363 - Lx3B LINE L1 0 6973 6848 1 738 1178 62 7 0 chr12 20061690 20061836 -101195694 + B1_Mm SINE Alu 1 147 0 1 738 528 81 0 0 chr12 20061840 20061914 -101195616 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1 738 392 243 92 35 chr12 20062564 20062705 -101194825 - B1F SINE Alu 0 149 1 1 738 240 35 0 0 chr12 20062809 20062838 -101194692 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 738 931 312 85 118 chr12 20063081 20063786 -101193744 - MER63C DNA AcHobo -5 925 244 1 738 8585 23 1 1 chr12 20063786 20064744 -101192786 + RLTR13A2 LTR ERVK 1 958 0 1 738 47836 32 13 10 chr12 20064744 20068758 -101188772 + ETnERV3-int LTR ERVK 1 3977 -1831 1 738 180 0 0 0 chr12 20068758 20068778 -101188752 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 738 47836 32 13 10 chr12 20068778 20070556 -101186974 + ETnERV3-int LTR ERVK 3978 5807 -1 1 738 8602 22 1 1 chr12 20070561 20071519 -101186011 + RLTR13A2 LTR ERVK 1 958 0 1 738 669 182 29 14 chr12 20071795 20071934 -101185596 + B1_Mur2 SINE Alu 1 141 -8 1 738 604 221 73 7 chr12 20072131 20072281 -101185249 + B3 SINE B2 56 215 -1 1 738 186 240 0 0 chr12 20072289 20072339 -101185191 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 738 414 209 143 162 chr12 20072348 20072426 -101185104 + B3 SINE B2 2 99 -117 1 738 952 91 27 34 chr12 20072426 20072574 -101184956 + B1_Mus1 SINE Alu 2 148 0 1 738 414 209 143 162 chr12 20072574 20072649 -101184881 + B3 SINE B2 100 152 -64 1 738 453 273 9 0 chr12 20073535 20073645 -101183885 - PB1D9 SINE Alu -6 114 4 1 738 1102 82 0 7 chr12 20073697 20073844 -101183686 + B1_Mus2 SINE Alu 2 147 0 1 738 1450 218 100 8 chr12 20074277 20074657 -101182873 - MTD LTR MaLR 0 419 5 1 738 387 339 40 13 chr12 20074884 20075108 -101182422 - MER46C DNA MER2_type -1 337 108 1 738 736 186 14 14 chr12 20075139 20075281 -101182249 - B1_Mur3 SINE Alu -6 143 2 1 738 328 247 12 0 chr12 20075400 20075481 -101182049 + ID2 SINE ID 2 83 0 1 738 756 175 0 0 chr12 20075538 20075787 -101181743 + (TG)n Simple_repeat Simple_repeat 1 249 0 1 738 23 0 0 0 chr12 20077381 20077404 -101180126 + GC_rich Low_complexity Low_complexity 1 23 0 1 738 4657 132 64 35 chr12 20078929 20079430 -101178100 - RMER17D LTR ERVK -2 887 395 1 738 222 37 0 0 chr12 20079430 20079457 -101178073 + (GGAGA)n Simple_repeat Simple_repeat 2 28 0 1 738 4657 132 64 35 chr12 20079457 20079817 -101177713 - RMER17D LTR ERVK -495 394 1 1 738 583 249 204 55 chr12 20080350 20080805 -101176725 - L1_Mur3 LINE L1 -4044 1836 1314 1 738 407 246 58 17 chr12 20081130 20081304 -101176226 - L1_Mur3 LINE L1 -6644 1084 904 1 738 334 369 53 16 chr12 20083412 20083602 -101173928 + MTD LTR MaLR 15 211 -208 1 738 1753 171 68 23 chr12 20083604 20083913 -101173617 - RLTR9D LTR ERVK -2 401 75 1 738 3358 36 5 5 chr12 20083913 20084309 -101173221 + MTA_Mm LTR MaLR 1 396 0 1 738 1753 171 68 23 chr12 20084309 20084383 -101173147 - RLTR9D LTR ERVK -329 74 1 1 738 180 111 0 0 chr12 20084587 20084614 -101172916 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 738 371 347 64 62 chr12 20084633 20084944 -101172586 + MTE-int LTR MaLR 24 361 -1219 1 738 4852 239 80 17 chr12 20084985 20086319 -101171211 - Lx4B LINE L1 -4 7054 5637 1 738 1195 307 84 47 chr12 20086426 20087042 -101170488 + MTE-int LTR MaLR 783 1421 -159 1 738 203 194 0 0 chr12 20087101 20087137 -101170393 + T-rich Low_complexity Low_complexity 1 36 0 1 738 270 245 18 45 chr12 20087146 20087257 -101170273 - Lx4B LINE L1 -4 7054 6947 1 738 8130 195 98 29 chr12 20087690 20087839 -101169691 + MurSatRep1 Unknown Unknown 2 175 -1962 1 738 346 306 65 0 chr12 20087839 20087963 -101169567 - B1_Mur2 SINE Alu -17 132 1 1 738 8130 195 98 29 chr12 20087963 20088809 -101168721 + MurSatRep1 Unknown Unknown 176 1125 -1012 1 738 1084 143 5 16 chr12 20088809 20088994 -101168536 - B2_Mm1a SINE B2 -9 184 2 1 738 8130 195 98 29 chr12 20088994 20089993 -101167537 + MurSatRep1 Unknown Unknown 1126 2134 -3 1 738 373 347 30 27 chr12 20090034 20090333 -101167197 + MurSatRep1 Unknown Unknown 1750 2049 -88 1 738 445 273 25 22 chr12 20090190 20090412 -101167118 + MMSAT4 Satellite Satellite 1 222 0 1 738 483 301 75 50 chr12 20090366 20090525 -101167005 + MurSatRep1 Unknown Unknown 1691 1811 -326 1 738 462 288 0 0 chr12 20090525 20090664 -101166866 + MMSAT4 Satellite Satellite 30 168 0 1 738 483 301 75 50 chr12 20090664 20091089 -101166441 + MurSatRep1 Unknown Unknown 1812 2137 0 1 738 541 287 79 46 chr12 20091073 20091504 -101166026 + MurSatRep1 Unknown Unknown 1691 2135 -2 1 738 446 295 0 0 chr12 20091449 20091588 -101165942 + MMSAT4 Satellite Satellite 30 168 0 1 738 490 299 68 45 chr12 20091577 20091953 -101165577 + MurSatRep1 Unknown Unknown 1691 2049 -88 1 738 458 288 0 0 chr12 20091953 20092092 -101165438 + MMSAT4 Satellite Satellite 30 168 0 1 738 490 299 68 45 chr12 20092092 20092181 -101165349 + MurSatRep1 Unknown Unknown 2050 2135 -2 1 738 2928 99 0 2 chr12 20092226 20092630 -101164900 + L1_Mus1 LINE L1 6163 6565 -2 1 738 370 280 8 8 chr12 20092651 20092777 -101164753 + MMSAT4 Satellite Satellite 43 168 0 1 738 225 237 0 0 chr12 20093051 20093110 -101164420 + ORR1C2 LTR MaLR 312 370 -14 1 738 746 143 0 130 chr12 20093402 20093571 -101163959 + B1_Mus1 SINE Alu 2 148 0 1 738 2135 245 63 11 chr12 20093838 20094764 -101162766 - L1_Mur3 LINE L1 -3798 2082 1088 1 738 451 271 29 35 chr12 20094749 20094921 -101162609 - L1_Mur3 LINE L1 -6510 1218 1048 1 738 279 0 0 0 chr12 20095487 20095518 -101162012 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 738 29 0 0 0 chr12 20095542 20095571 -101161959 + AT_rich Low_complexity Low_complexity 1 29 0 1 738 586 225 59 12 chr12 20095582 20095755 -101161775 - Lx2B LINE L1 -212 6796 6623 1 738 391 205 3 21 chr12 20095798 20096087 -101161443 + (TA)n Simple_repeat Simple_repeat 1 283 0 1 738 672 93 0 0 chr12 20096091 20096188 -101161342 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 1 738 484 292 48 89 chr12 20096372 20096581 -101160949 + RLTR11A2 LTR ERVK 134 346 -181 1 738 938 150 0 0 chr12 20096581 20096728 -101160802 + B1_Mm SINE Alu 1 147 0 1 738 377 289 49 102 chr12 20096728 20096834 -101160696 + RLTR11A2 LTR ERVK 333 432 -96 1 738 387 102 10 106 chr12 20096839 20097037 -101160493 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1 738 449 173 23 8 chr12 20097284 20097412 -101160118 + (CA)n Simple_repeat Simple_repeat 1 130 0 1 738 402 221 33 0 chr12 20097424 20097742 -101159788 + (CA)n Simple_repeat Simple_repeat 1 328 0 1 738 251 248 44 44 chr12 20097746 20097860 -101159670 - L1M1 LINE L1 -401 5899 5786 1 738 370 139 41 14 chr12 20098415 20098488 -101159042 + L1MC1 LINE L1 6259 6333 0 1 738 2119 105 63 9 chr12 20098498 20098833 -101158697 + L1_Mus3 LINE L1 6279 6631 -7 1 738 596 300 24 0 chr12 20098844 20099014 -101158516 + B3A SINE B2 2 175 -23 1 738 201 279 109 20 chr12 20099444 20099573 -101157957 + MIR SINE MIR 65 202 -66 1 738 229 240 78 26 chr12 20102553 20102630 -101154900 + PB1D10 SINE Alu 17 97 -20 1 738 232 247 51 51 chr12 20102569 20102636 -101154894 + MT2B LTR ERVL 190 256 -345 1 738 815 159 0 20 chr12 20102636 20102784 -101154746 + B1_Mur4 SINE Alu 1 145 -5 1 738 616 211 0 34 chr12 20102774 20102921 -101154609 + ID_B1 SINE B4 75 216 -8 2 738 588 278 14 72 chr12 20103765 20103974 -101153556 + B4A SINE B4 24 220 -72 2 738 452 314 52 0 chr12 20103991 20104163 -101153367 + B3A SINE B2 2 182 -16 2 738 968 131 0 0 chr12 20104197 20104334 -101153196 + B1_Mur4 SINE Alu 1 137 -13 2 738 548 217 0 22 chr12 20104418 20104602 -101152928 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 738 443 143 0 0 chr12 20104635 20104712 -101152818 + ORR1A2 LTR MaLR 251 327 0 2 738 297 109 0 0 chr12 20104719 20104765 -101152765 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 738 750 23 0 0 chr12 20104765 20104853 -101152677 + (GAGAA)n Simple_repeat Simple_repeat 1 88 0 2 738 1544 139 81 65 chr12 20104969 20105249 -101152281 - IAPEY3_LTR LTR ERVK -5 327 47 2 738 1708 26 0 0 chr12 20105249 20105442 -101152088 - B2_Mm1a SINE B2 0 193 1 2 738 1544 139 81 65 chr12 20105442 20105483 -101152047 - IAPEY3_LTR LTR ERVK -286 46 1 2 738 1326 216 55 15 chr12 20105483 20105826 -101151704 - IAPEz-int LTR ERVK 0 6481 6125 2 738 49011 101 16 9 chr12 20105843 20113122 -101144408 - IAPEY3-int LTR ERVK -342 7338 1 2 738 1817 139 86 0 chr12 20113125 20113426 -101144104 - IAPEY3_LTR LTR ERVK -5 327 1 2 738 448 241 0 9 chr12 20113754 20113863 -101143667 - PB1D9 SINE Alu 0 120 13 2 738 294 254 185 85 chr12 20113863 20113943 -101143587 - ID_B1 SINE B4 0 224 17 2 738 665 232 54 43 chr12 20114052 20114237 -101143293 + B3 SINE B2 28 214 -2 2 738 892 64 9 16 chr12 20114306 20114439 -101143091 + B1_Mus1 SINE Alu 15 146 -2 2 738 606 209 72 14 chr12 20114442 20114592 -101142938 + ID_B1 SINE B4 69 223 -69 2 738 243 114 0 0 chr12 20114792 20114836 -101142694 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 738 273 98 0 0 chr12 20114836 20114877 -101142653 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 738 648 179 47 31 chr12 20114887 20115014 -101142516 - B1_Mur3 SINE Alu -12 137 9 2 738 723 223 16 11 chr12 20115016 20115169 -101142361 - ID_B1 SINE B4 -45 247 92 2 738 1180 183 9 18 chr12 20116643 20116871 -101140659 + URR1A DNA MER1_type 1 226 0 2 738 205 318 112 43 chr12 20117534 20117695 -101139835 - MIRb SINE MIR 0 268 97 2 738 665 241 57 31 chr12 20117703 20117896 -101139634 + B4A SINE B4 8 205 -87 2 738 726 240 0 0 chr12 20118106 20118235 -101139295 + RSINE1 SINE B4 3 131 -34 2 738 273 310 0 30 chr12 20118357 20118447 -101139083 - MER2B DNA MER2_type -244 92 8 2 738 205 248 9 18 chr12 20118890 20118955 -101138575 + G-rich Low_complexity Low_complexity 1 64 0 2 738 253 304 79 18 chr12 20119061 20119175 -101138355 + MIRb SINE MIR 23 143 -125 2 738 1890 149 16 10 chr12 20119177 20119489 -101138041 - MTC LTR MaLR 0 421 108 2 738 365 200 28 112 chr12 20119491 20119598 -101137932 + MT2B LTR ERVL 167 264 -337 2 738 917 87 16 0 chr12 20119503 20119621 -101137909 + B1_Mm SINE Alu 16 135 -12 2 738 816 92 0 0 chr12 20119621 20119740 -101137790 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 2 738 542 233 68 30 chr12 20119755 20119888 -101137642 + B1_Mur3 SINE Alu 2 139 -10 2 738 243 61 0 0 chr12 20119889 20119922 -101137608 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 738 501 121 0 0 chr12 20119932 20120015 -101137515 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 738 602 222 17 0 chr12 20120015 20120132 -101137398 - MTC LTR MaLR -302 119 1 2 738 246 167 83 0 chr12 20121235 20121283 -101136247 + MTE2a LTR MaLR 1 52 -327 2 738 25 0 0 0 chr12 20121287 20121312 -101136218 + AT_rich Low_complexity Low_complexity 1 25 0 2 738 546 307 80 92 chr12 20121312 20121332 -101136198 + MTE2a LTR MaLR 12 30 -389 2 738 641 231 141 11 chr12 20121332 20121516 -101136014 - B3 SINE B2 -6 210 3 2 738 546 307 80 92 chr12 20121516 20121544 -101135986 + MTE2a LTR MaLR 31 48 -371 2 738 946 152 14 0 chr12 20121544 20121689 -101135841 - B1_Mus1 SINE Alu -1 147 1 2 738 546 307 80 92 chr12 20121689 20121720 -101135810 + MTE2a LTR MaLR 49 77 -342 2 738 1206 174 14 14 chr12 20121720 20121942 -101135588 + URR1B DNA MER1_type 1 222 -3 2 738 634 232 170 122 chr12 20121942 20122272 -101135258 + MTE2a LTR MaLR 35 417 -2 2 738 230 296 136 0 chr12 20124017 20124098 -101133432 + PB1D10 SINE Alu 12 103 -14 2 738 892 164 0 20 chr12 20124100 20124249 -101133281 + B1_Mur4 SINE Alu 1 146 -4 2 738 826 223 28 42 chr12 20124277 20124492 -101133038 + ID_B1 SINE B4 3 214 -10 2 738 635 289 14 72 chr12 20125401 20125610 -101131920 + B4A SINE B4 24 220 -72 2 738 511 317 30 0 chr12 20125627 20125791 -101131739 + B3A SINE B2 2 170 -28 2 738 1623 37 0 5 chr12 20125813 20126005 -101131525 + B2_Mm1a SINE B2 2 192 -1 2 738 989 124 0 0 chr12 20126036 20126173 -101131357 + B1_Mur4 SINE Alu 1 137 -13 2 738 318 286 0 0 chr12 20126259 20126430 -101131100 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 738 2211 94 3 70 chr12 20126463 20126805 -101130725 + ORR1A2 LTR MaLR 1 319 -8 2 738 496 316 37 19 chr12 20127531 20127692 -101129838 - RSINE1 SINE B4 -1 164 1 2 738 186 206 0 0 chr12 20127713 20127781 -101129749 + A-rich Low_complexity Low_complexity 1 68 0 2 738 1979 44 12 0 chr12 20128210 20128459 -101129071 - RLTR13B1 LTR ERVK 0 893 642 2 738 28808 246 30 24 chr12 20128460 20135664 -101121866 - MMERGLN-int LTR ERV1 -305 7251 1 2 738 2079 207 22 44 chr12 20135664 20136123 -101121407 - RLTR1D LTR ERV1 0 605 157 2 738 216 0 0 0 chr12 20137245 20137269 -101120261 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 738 495 0 0 0 chr12 20137269 20137323 -101120207 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 738 376 208 10 10 chr12 20138280 20138382 -101119148 + CT-rich Low_complexity Low_complexity 3 104 0 2 738 717 253 37 27 chr12 20138589 20138776 -101118754 + B3 SINE B2 28 216 0 2 738 868 79 0 0 chr12 20138853 20138967 -101118563 + B1_Mm SINE Alu 24 137 -10 2 738 242 29 0 28 chr12 20138967 20139003 -101118527 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 738 358 261 77 17 chr12 20139003 20139120 -101118410 + ID_B1 SINE B4 74 197 -27 2 738 2553 109 0 45 chr12 20139120 20139496 -101118034 + RLTR10D LTR ERVK 1 359 0 2 738 7678 68 13 43 chr12 20139496 20140585 -101116945 + IAP-d-int LTR ERVK 1 1056 -5486 2 738 12208 65 1 1 chr12 20140583 20142155 -101115375 + IAP-d-int LTR ERVK 4970 6542 0 2 738 2270 110 0 59 chr12 20142155 20142512 -101115018 + RLTR10D LTR ERVK 1 336 -23 2 738 381 22 0 0 chr12 20142763 20142809 -101114721 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 738 644 179 47 31 chr12 20142853 20142980 -101114550 - B1_Mur3 SINE Alu -12 137 9 2 738 686 242 26 14 chr12 20142982 20143153 -101114377 - ID_B1 SINE B4 -45 247 73 2 738 1348 130 13 18 chr12 20144640 20144867 -101112663 + URR1A DNA MER1_type 1 226 0 2 738 1003 96 0 7 chr12 20145679 20145816 -101111714 + B1_Mus2 SINE Alu 2 137 -10 2 738 207 0 0 0 chr12 20145817 20145840 -101111690 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 738 721 267 50 25 chr12 20145858 20146058 -101111472 + B4A SINE B4 2 206 -86 2 738 729 224 0 0 chr12 20146286 20146411 -101111119 + RSINE1 SINE B4 3 127 -38 2 738 417 276 166 0 chr12 20146469 20146632 -101110898 - MER2 DNA MER2_type -149 196 7 2 738 1960 148 10 10 chr12 20147341 20147655 -101109875 - MTC LTR MaLR 0 421 108 2 738 694 186 56 28 chr12 20147658 20147802 -101109728 + B1_Mur3 SINE Alu 2 149 0 2 738 486 137 0 0 chr12 20147822 20147917 -101109613 + (GA)n Simple_repeat Simple_repeat 1 95 0 2 738 573 191 35 9 chr12 20147917 20148033 -101109497 - MTC LTR MaLR -302 119 1 2 738 271 151 74 6 chr12 20149128 20149182 -101108348 + MTE2a LTR MaLR 1 52 -369 2 738 797 228 99 11 chr12 20149216 20149407 -101108123 - B3 SINE B2 -6 210 3 2 738 946 152 14 0 chr12 20149435 20149580 -101107950 - B1_Mus1 SINE Alu -1 147 1 2 738 1331 180 0 5 chr12 20149611 20149834 -101107696 + URR1B DNA MER1_type 1 222 -3 2 738 800 209 170 106 chr12 20149837 20150148 -101107382 + MTE2a LTR MaLR 35 365 -14 2 738 281 313 48 57 chr12 20150255 20150360 -101107170 + RSINE1 SINE B4 34 137 -28 2 738 311 78 20 0 chr12 20150385 20150436 -101107094 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 738 623 48 12 0 chr12 20150436 20150518 -101107012 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 738 225 339 14 93 chr12 20150853 20150993 -101106537 - MLT1-int LTR MaLR -486 885 757 2 738 32 0 0 0 chr12 20151207 20151239 -101106291 + AT_rich Low_complexity Low_complexity 1 32 0 2 738 216 226 0 0 chr12 20151294 20151356 -101106174 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 738 2593 129 10 2 chr12 20152218 20152615 -101104915 - RLTR9E LTR ERVK -9 400 1 2 738 431 118 0 26 chr12 20152615 20152693 -101104837 - ETnERV2-int LTR ERVK 0 7406 7331 2 738 15299 201 45 33 chr12 20152903 20156930 -101100600 - ETnERV2-int LTR ERVK -977 6429 1597 2 738 6837 212 31 17 chr12 20156983 20158598 -101098932 - ETnERV-int LTR ERVK -5094 2312 2 2 738 2733 120 5 14 chr12 20158599 20159012 -101098518 - RLTR9E LTR ERVK 0 409 1 2 738 513 0 0 0 chr12 20159091 20159148 -101098382 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 738 604 96 0 0 chr12 20159152 20159235 -101098295 - B2_Mm2 SINE B2 -110 85 3 2 738 258 196 0 0 chr12 20159318 20159364 -101098166 + PB1D10 SINE Alu 40 85 -32 2 738 2159 23 4 0 chr12 20159364 20159623 -101097907 - RLTR10-int LTR ERVK -1687 300 41 2 738 2456 50 15 200 chr12 20159635 20160111 -101097419 - RLTR10 LTR ERVK -2 388 1 2 738 16330 25 1 14 chr12 20160111 20162083 -101095447 - RLTR10-int LTR ERVK -1 1986 41 2 738 2456 50 15 200 chr12 20162095 20162571 -101094959 - RLTR10 LTR ERVK -2 388 1 2 738 16330 25 1 14 chr12 20162571 20164543 -101092987 - RLTR10-int LTR ERVK -1 1986 41 2 738 2456 50 15 200 chr12 20164555 20165031 -101092499 - RLTR10 LTR ERVK -2 388 1 2 738 16330 25 1 14 chr12 20165031 20167003 -101090527 - RLTR10-int LTR ERVK -1 1986 41 2 738 2442 50 15 200 chr12 20167015 20167491 -101090039 - RLTR10 LTR ERVK -2 388 1 2 738 453 253 11 0 chr12 20167524 20167615 -101089915 + RSINE1 SINE B4 42 133 -32 2 738 489 195 66 66 chr12 20167600 20167737 -101089793 + B1F1 SINE Alu 13 149 0 2 738 400 182 25 25 chr12 20167768 20167847 -101089683 + B2_Mm2 SINE B2 15 93 -102 2 738 399 98 0 0 chr12 20167878 20167939 -101089591 + (GGGGA)n Simple_repeat Simple_repeat 2 62 0 2 738 696 214 36 0 chr12 20168283 20168423 -101089107 + B1_Mus1 SINE Alu 3 147 -1 2 738 24 0 0 0 chr12 20168428 20168452 -101089078 + AT_rich Low_complexity Low_complexity 1 24 0 2 738 765 233 85 0 chr12 20168921 20169110 -101088420 + B3 SINE B2 3 207 -9 2 738 437 197 157 33 chr12 20169137 20169258 -101088272 + B1_Mur2 SINE Alu 1 136 -13 2 738 750 53 0 0 chr12 20169264 20169359 -101088171 + (GA)n Simple_repeat Simple_repeat 2 96 0 2 738 270 143 0 0 chr12 20169519 20169582 -101087948 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 2 738 240 100 0 0 chr12 20169601 20169641 -101087889 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 738 1553 196 91 71 chr12 20171623 20171702 -101085828 + RMER17D2 LTR ERVK 253 334 -475 2 738 1002 30 7 15 chr12 20171702 20171838 -101085692 + (TCTCC)n Simple_repeat Simple_repeat 2 136 0 3 738 1553 196 91 71 chr12 20171838 20172196 -101085334 + RMER17D2 LTR ERVK 335 699 -110 2 738 564 163 211 34 chr12 20172189 20172308 -101085222 - MT2A LTR ERVL -180 313 92 3 738 606 207 68 6 chr12 20172304 20172441 -101085089 - MT2A LTR ERVL -468 133 1 3 738 531 259 20 0 chr12 20172442 20172589 -101084941 - L1MD LINE L1 -676 5566 5417 3 738 802 218 17 11 chr12 20172603 20172784 -101084746 + B3A SINE B2 1 182 -16 3 738 542 243 84 89 chr12 20172884 20173074 -101084456 - B3 SINE B2 -26 190 2 3 738 638 65 0 11 chr12 20173089 20173182 -101084348 + (TTTTC)n Simple_repeat Simple_repeat 3 94 0 3 738 282 160 28 83 chr12 20173183 20173215 -101084315 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 738 1121 95 0 0 chr12 20173215 20173362 -101084168 - B1_Mus1 SINE Alu 0 148 2 3 738 282 160 28 83 chr12 20173362 20173438 -101084092 + (TTTG)n Simple_repeat Simple_repeat 1 73 0 3 738 332 283 8 74 chr12 20173438 20173560 -101083970 - RLTR25B LTR ERVK -473 555 442 3 738 794 138 7 68 chr12 20173453 20173601 -101083929 - B1_Mus1 SINE Alu 0 148 10 3 738 815 263 30 57 chr12 20174041 20174260 -101083270 - MTD LTR MaLR -14 405 196 3 738 572 187 37 142 chr12 20174268 20174311 -101083219 - B2_Mm2 SINE B2 0 195 165 3 738 342 0 0 0 chr12 20174311 20174349 -101083181 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 3 738 748 187 37 142 chr12 20174349 20174523 -101083007 - B3 SINE B2 -42 174 1 3 738 746 224 39 41 chr12 20174523 20174716 -101082814 - MTD LTR MaLR -202 194 3 3 738 544 241 115 20 chr12 20175328 20175476 -101082054 + RSINE1 SINE B4 2 163 -2 3 738 529 266 146 66 chr12 20175610 20175761 -101081769 - RMER10A LTR ERVL 0 442 279 3 738 549 0 0 0 chr12 20175761 20175822 -101081708 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 738 315 0 0 0 chr12 20175822 20175856 -101081674 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 738 529 266 146 66 chr12 20175856 20176053 -101081477 - RMER10A LTR ERVL -164 278 66 3 738 308 302 42 21 chr12 20176639 20176781 -101080749 + MLT1N2 LTR MaLR 413 557 -5 3 738 222 325 52 7 chr12 20177172 20177260 -101080270 - MIRm SINE MIR -121 155 62 3 738 190 122 195 0 chr12 20177454 20177495 -101080035 - L3 LINE CR1 -3526 963 915 3 738 1029 281 9 0 chr12 20177707 20177931 -101079599 - MTEa LTR MaLR -153 226 1 3 738 256 250 109 0 chr12 20178064 20178128 -101079402 + ID_B1 SINE B4 51 121 -103 3 738 281 278 34 77 chr12 20178092 20178145 -101079385 + PB1D10 SINE Alu 5 51 -66 3 738 935 144 7 0 chr12 20178145 20178291 -101079239 - B1_Mus1 SINE Alu -1 147 1 3 738 281 278 34 77 chr12 20178291 20178354 -101079176 + PB1D10 SINE Alu 52 116 -1 3 738 326 307 50 142 chr12 20178431 20178559 -101078971 - MLT1B LTR MaLR -9 381 254 3 738 2582 99 39 8 chr12 20178559 20178947 -101078583 + MTB LTR MaLR 1 400 0 3 738 326 307 50 142 chr12 20178947 20179057 -101078473 - MLT1B LTR MaLR -137 253 165 3 738 635 232 119 15 chr12 20179086 20179287 -101078243 + B4A SINE B4 3 224 -68 3 738 3972 51 12 14 chr12 20179520 20180014 -101077516 - MT2_Mm LTR ERVL 0 493 1 3 738 1071 139 0 0 chr12 20180291 20180471 -101077059 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 738 1017 53 0 0 chr12 20180474 20180606 -101076924 + (TCTA)n Simple_repeat Simple_repeat 4 135 0 3 738 277 315 54 0 chr12 20180636 20180654 -101076876 - ID_B1 SINE B4 -127 97 1 3 738 300 270 40 0 chr12 20180654 20180728 -101076802 - ID4_ SINE ID -6 77 1 3 738 852 203 0 13 chr12 20180741 20180891 -101076639 - B1_Mur1 SINE Alu 0 149 2 3 738 893 151 7 0 chr12 20180939 20181085 -101076445 + B1_Mus1 SINE Alu 1 147 -1 3 738 558 286 39 7 chr12 20181207 20181362 -101076168 - RSINE1 SINE B4 -1 164 5 3 738 480 224 58 58 chr12 20181509 20181665 -101075865 - MTD-int LTR MaLR -1102 156 1 3 738 1075 216 241 0 chr12 20181671 20181991 -101075539 - MTD LTR MaLR 0 419 23 3 738 209 33 33 0 chr12 20181993 20182023 -101075507 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 3 738 3200 248 41 65 chr12 20182090 20182999 -101074531 + MTC-int LTR MaLR 96 982 -276 3 738 1898 158 3 6 chr12 20182999 20183311 -101074219 + RLTR10E LTR ERVK 1 311 0 3 738 2878 234 53 58 chr12 20183311 20184183 -101073347 + MMERVK10C-int LTR ERVK 1 867 -6714 3 738 1502 180 118 58 chr12 20184166 20184633 -101072897 + RMER16-int LTR ERVK 314 659 -4747 3 738 363 185 123 0 chr12 20184608 20184689 -101072841 + MMERVK10C-int LTR ERVK 938 1028 -5109 3 92 13062 101 15 6 chr12 20184680 20186478 -101071052 + MMERVK10C-int LTR ERVK 1885 3698 -3883 3 739 833 246 30 10 chr12 20186478 20186679 -101070851 - RLTR46 LTR ERVK -115 205 1 3 739 2417 152 16 42 chr12 20186799 20187225 -101070305 - MTC LTR MaLR -6 415 1 3 739 532 272 80 0 chr12 20188255 20188380 -101069150 - RSINE1 SINE B4 -10 155 21 3 739 403 103 0 0 chr12 20188753 20188811 -101068719 + RMER6D LTR ERVK 1 58 -662 3 739 327 200 0 0 chr12 20189063 20189123 -101068407 + B3 SINE B2 70 129 -87 3 739 480 292 0 13 chr12 20189564 20189713 -101067817 - B1_Mm SINE Alu 0 147 1 3 739 522 37 24 12 chr12 20189881 20189963 -101067567 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 3 739 1500 208 95 83 chr12 20190105 20190457 -101067073 + MTD LTR MaLR 16 376 -43 3 739 618 210 33 53 chr12 20190457 20190608 -101066922 - B1_Mus1 SINE Alu 0 148 1 3 739 1500 208 95 83 chr12 20190608 20190654 -101066876 + MTD LTR MaLR 377 419 0 3 739 290 139 0 0 chr12 20190866 20190909 -101066621 + MTC LTR MaLR 92 134 -287 3 739 586 68 11 11 chr12 20191452 20191541 -101065989 + (TG)n Simple_repeat Simple_repeat 1 89 0 3 739 664 276 92 42 chr12 20191570 20191808 -101065722 - B4A SINE B4 -38 254 5 3 739 244 330 108 31 chr12 20192491 20192713 -101064817 + L2a LINE L2 3004 3242 -184 3 739 618 291 9 87 chr12 20192718 20192936 -101064594 + ID_B1 SINE B4 2 202 -22 3 739 391 82 0 0 chr12 20193034 20193083 -101064447 + B2_Mm1t SINE B2 112 160 -33 3 739 435 19 0 0 chr12 20193083 20193135 -101064395 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 3 739 432 229 32 16 chr12 20193377 20193501 -101064029 - Lx3B LINE L1 0 6973 6848 3 739 1132 75 7 0 chr12 20194033 20194179 -101063351 + B1_Mm SINE Alu 1 147 0 3 739 828 80 0 0 chr12 20194181 20194294 -101063236 + (GAAA)n Simple_repeat Simple_repeat 1 113 0 3 739 455 206 92 35 chr12 20194919 20195060 -101062470 - B1F SINE Alu 0 149 1 3 739 1231 312 82 113 chr12 20195426 20196134 -101061396 - MER63C DNA AcHobo -5 925 240 3 739 780 171 21 7 chr12 20196398 20196539 -101060991 + B1_Mur1 SINE Alu 1 143 -6 3 739 713 229 80 60 chr12 20196683 20196883 -101060647 + B3 SINE B2 13 216 0 3 739 300 261 0 0 chr12 20196893 20196985 -101060545 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 739 516 224 0 30 chr12 20197007 20197108 -101060422 + B3 SINE B2 2 99 -117 3 739 1122 95 0 0 chr12 20197108 20197255 -101060275 + B1_Mus1 SINE Alu 2 148 0 3 739 373 175 16 0 chr12 20197287 20197350 -101060180 + B3 SINE B2 89 152 -64 3 739 510 232 9 0 chr12 20198241 20198353 -101059177 - PB1D9 SINE Alu -6 114 2 3 739 1187 75 0 0 chr12 20198401 20198547 -101058983 + B1_Mus2 SINE Alu 2 147 0 3 739 344 68 0 33 chr12 20198551 20198612 -101058918 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 739 1467 215 100 8 chr12 20199010 20199390 -101058140 - MTD LTR MaLR 0 419 5 3 739 1337 51 80 0 chr12 20199561 20199736 -101057794 + B2_Mm2 SINE B2 2 190 -5 3 739 477 346 38 12 chr12 20199801 20200041 -101057489 - MER46C DNA MER2_type -1 337 92 3 739 869 179 0 14 chr12 20200057 20200204 -101057326 - B1_Mur3 SINE Alu -3 146 2 3 739 371 235 12 0 chr12 20200324 20200405 -101057125 + ID2 SINE ID 2 83 0 3 739 304 200 0 79 chr12 20200427 20200503 -101057027 - HAL1-3A_ME LINE L1 -813 2045 1976 3 739 809 130 6 0 chr12 20200508 20200670 -101056860 + (TG)n Simple_repeat Simple_repeat 2 164 0 3 739 663 153 0 0 chr12 20200683 20200833 -101056697 + (TG)n Simple_repeat Simple_repeat 2 151 0 3 739 31 26 0 0 chr12 20202414 20202452 -101055078 + GC_rich Low_complexity Low_complexity 1 38 0 3 739 465 84 0 0 chr12 20205796 20205867 -101051663 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 739 290 268 0 40 chr12 20205928 20206029 -101051501 - B4A SINE B4 -195 97 1 3 739 306 370 15 30 chr12 20207600 20207731 -101049799 - MER3 DNA MER1_type -78 131 3 3 739 305 326 31 0 chr12 20207796 20207894 -101049636 + MER5A1 DNA MER1_type 66 166 0 3 739 232 262 11 56 chr12 20207968 20208057 -101049473 - MER5B DNA MER1_type -62 116 32 3 739 526 257 49 44 chr12 20208454 20208642 -101048888 - B3A SINE B2 -5 190 3 3 739 309 247 20 70 chr12 20208921 20208995 -101048535 - L1MDa LINE L1 -4132 2501 2431 3 739 1041 99 0 7 chr12 20208995 20209138 -101048392 - B1_Mm SINE Alu -5 142 1 3 739 309 247 20 70 chr12 20209138 20209163 -101048367 - L1MDa LINE L1 -4203 2430 2407 3 739 335 295 102 21 chr12 20209205 20209392 -101048138 + Kanga1b DNA Tc2 474 675 -104 3 739 318 50 0 0 chr12 20209539 20209579 -101047951 + (A)n Simple_repeat Simple_repeat 1 40 0 3 739 743 191 167 34 chr12 20209589 20209822 -101047708 + Lx9 LINE L1 7381 7644 0 3 739 755 255 66 24 chr12 20210151 20210364 -101047166 - ID_B1 SINE B4 -2 222 1 3 739 377 123 15 0 chr12 20210906 20210971 -101046559 + (GGA)n Simple_repeat Simple_repeat 3 68 0 3 739 261 254 121 16 chr12 20211007 20211131 -101046399 + Lx8 LINE L1 7335 7471 -2 3 739 231 83 0 104 chr12 20211203 20211270 -101046260 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 3 739 322 344 34 68 chr12 20211309 20211546 -101045984 + MT2A LTR ERVL 74 302 -231 3 739 1012 146 23 6 chr12 20212127 20212299 -101045231 - RMER17D LTR ERVK -2 887 713 3 739 1366 288 13 32 chr12 20212449 20212482 -101045048 + ORR1D2 LTR MaLR 1 30 -340 3 739 1112 158 81 9 chr12 20212482 20212693 -101044837 - URR1A DNA MER1_type 0 226 1 3 739 1366 288 13 32 chr12 20212693 20213032 -101044498 + ORR1D2 LTR MaLR 31 366 -4 3 739 244 356 35 0 chr12 20213206 20213321 -101044209 - RMER15 LTR ERVL -16 559 441 3 739 1770 232 48 5 chr12 20213321 20213720 -101043810 + MTD LTR MaLR 1 416 -3 3 739 545 296 29 29 chr12 20214764 20214938 -101042592 - ID_B1 SINE B4 0 224 51 4 739 362 237 150 78 chr12 20215616 20215759 -101041771 + B3 SINE B2 8 158 -35 4 739 459 52 0 0 chr12 20215759 20215817 -101041713 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 739 262 237 152 79 chr12 20215817 20215840 -101041690 + B2_Mm1a SINE B2 159 185 -8 4 739 555 216 10 10 chr12 20215847 20215950 -101041580 + B1_Mur2 SINE Alu 7 109 -40 4 739 494 291 17 0 chr12 20216157 20216274 -101041256 + RSINE1 SINE B4 3 121 -44 4 739 1422 68 16 0 chr12 20216275 20216467 -101041063 + B2_Mm2 SINE B2 1 195 0 4 739 24 53 0 0 chr12 20216558 20216596 -101040934 + AT_rich Low_complexity Low_complexity 1 38 0 4 739 207 146 0 0 chr12 20216627 20216668 -101040862 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 4 739 309 263 13 13 chr12 20217158 20217235 -101040295 + ID2 SINE ID 2 78 -5 4 739 228 35 0 0 chr12 20217445 20217474 -101040056 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 739 209 348 44 11 chr12 20217514 20217604 -101039926 - L2c LINE L2 -39 3348 3256 4 739 375 279 217 53 chr12 20217612 20217930 -101039600 - ORR1D2 LTR MaLR 0 370 1 4 739 965 170 0 7 chr12 20218159 20218307 -101039223 - B1_Mur1 SINE Alu 0 149 3 4 739 289 280 13 39 chr12 20218394 20218472 -101039058 + RSINE1 SINE B4 50 125 -40 4 739 1415 89 16 0 chr12 20218560 20218751 -101038779 + B2_Mm2 SINE B2 1 194 -1 4 739 192 329 92 49 chr12 20218813 20218976 -101038554 - L2c LINE L2 -459 2960 2791 4 739 2409 138 19 56 chr12 20219380 20219692 -101037838 - MTC LTR MaLR -6 415 107 4 739 4565 91 31 6 chr12 20219692 20220326 -101037204 - L1Md_F2 LINE L1 -1 6581 5932 4 739 2409 138 19 56 chr12 20220326 20220444 -101037086 - MTC LTR MaLR -315 106 1 4 739 542 286 71 0 chr12 20221470 20221596 -101035934 - RSINE1 SINE B4 -10 155 21 4 739 258 253 74 25 chr12 20221895 20221969 -101035561 + B4A SINE B4 3 80 -212 4 739 431 85 0 0 chr12 20221969 20222028 -101035502 + RMER6D LTR ERVK 1 59 -661 4 739 386 223 12 62 chr12 20222279 20222413 -101035117 + B3 SINE B2 70 192 -1 4 739 230 135 54 71 chr12 20222450 20222506 -101035024 + ORR1D2 LTR MaLR 314 368 -2 4 739 548 260 7 14 chr12 20222778 20222926 -101034604 - B1_Mm SINE Alu 0 147 1 4 739 584 13 0 39 chr12 20223106 20223184 -101034346 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 4 739 1401 213 107 27 chr12 20223326 20223663 -101033867 + MTD LTR MaLR 16 379 -40 4 739 754 186 7 54 chr12 20223682 20223830 -101033700 - B1_Mus1 SINE Alu 0 148 8 4 739 358 102 0 0 chr12 20223830 20223879 -101033651 + MTD LTR MaLR 373 421 0 4 739 200 297 0 0 chr12 20224002 20224066 -101033464 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 739 280 139 0 0 chr12 20224100 20224143 -101033387 + MTC LTR MaLR 92 134 -287 4 739 493 64 13 13 chr12 20224685 20224764 -101032766 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 739 608 285 92 42 chr12 20224793 20225031 -101032499 - B4A SINE B4 -38 254 5 4 739 586 236 81 0 chr12 20225159 20225282 -101032248 + ETnERV2-int LTR ERVK 7070 7202 -204 4 739 318 304 113 36 chr12 20225714 20225936 -101031594 + L2b LINE L2 3004 3242 -184 4 739 623 286 9 87 chr12 20225941 20226159 -101031371 + ID_B1 SINE B4 2 202 -22 4 739 276 194 153 0 chr12 20226389 20226461 -101031069 - MER5A1 DNA MER1_type -71 95 13 4 739 1138 113 6 0 chr12 20226955 20227114 -101030416 + B2_Mm1a SINE B2 1 160 -33 4 739 576 0 0 0 chr12 20227114 20227178 -101030352 + (TAAA)n Simple_repeat Simple_repeat 3 66 0 4 739 514 176 37 0 chr12 20227420 20227528 -101030002 - Lx3B LINE L1 0 6973 6862 4 739 431 256 85 28 chr12 20228676 20228817 -101028713 - B1F SINE Alu 0 149 1 4 739 699 298 44 0 chr12 20229187 20229412 -101028118 - MER63C DNA AcHobo -5 925 691 4 739 252 290 52 41 chr12 20229451 20229548 -101027982 + MER63D DNA AcHobo 537 634 -427 4 739 342 326 91 0 chr12 20229483 20229615 -101027915 - MER63C DNA AcHobo -237 693 550 4 739 486 126 58 0 chr12 20229728 20229815 -101027715 - RMER17D LTR ERVK -797 92 1 4 739 340 211 28 0 chr12 20230378 20230449 -101027081 - L1_Mur3 LINE L1 -4044 1836 1764 4 739 249 33 0 0 chr12 20230449 20230479 -101027051 + (A)n Simple_repeat Simple_repeat 1 30 0 4 739 483 268 82 0 chr12 20230652 20230883 -101026647 - L1_Mur3 LINE L1 -4314 1563 1314 4 739 490 258 24 39 chr12 20231179 20231385 -101026145 - L1_Mur3 LINE L1 -6622 1106 904 4 739 1103 249 90 116 chr12 20231995 20232587 -101024943 - RLTR1D LTR ERV1 -13 611 52 4 739 338 139 24 0 chr12 20232608 20232689 -101024841 - RLTR1B-int LTR ERV1 0 3299 3243 4 739 183 266 58 72 chr12 20232689 20232758 -101024772 - L4 LINE RTE -788 1241 1174 4 739 28214 231 21 16 chr12 20232758 20240186 -101017344 - MMERGLN-int LTR ERV1 -128 7650 3 4 739 1103 249 90 116 chr12 20240189 20240781 -101016749 - RLTR1D LTR ERV1 -13 611 52 4 739 339 360 68 21 chr12 20242302 20242492 -101015038 + MTD LTR MaLR 15 213 -206 4 739 2003 158 73 21 chr12 20242492 20242798 -101014732 - RLTR9D LTR ERVK -2 401 75 4 739 3305 31 10 5 chr12 20242798 20243192 -101014338 + MTA_Mm LTR MaLR 1 396 0 4 739 2003 158 73 21 chr12 20243192 20243266 -101014264 - RLTR9D LTR ERVK -329 74 1 4 739 315 330 124 31 chr12 20243268 20243462 -101014068 + MTD LTR MaLR 192 403 -16 4 739 261 57 0 0 chr12 20243474 20243509 -101014021 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 739 513 362 34 13 chr12 20243528 20243763 -101013767 + MTD-int LTR MaLR 24 263 -1107 4 739 889 122 0 39 chr12 20243907 20244060 -101013470 - B1_Mm SINE Alu 0 147 1 4 739 5831 240 17 7 chr12 20244067 20245468 -101012062 - Lx4B LINE L1 -4 7054 5640 4 739 1373 327 36 61 chr12 20245482 20246201 -101011329 + MTD-int LTR MaLR 562 1262 -108 4 739 303 241 25 41 chr12 20246304 20246425 -101011105 - Lx4B LINE L1 -4 7054 6936 4 739 247 354 77 48 chr12 20246541 20246749 -101010781 - B3 SINE B2 0 216 3 4 739 9061 196 40 30 chr12 20246839 20247954 -101009576 + MurSatRep1 Unknown Unknown 2 1126 -1011 4 739 1363 88 6 0 chr12 20247954 20248136 -101009394 - B2_Mm1a SINE B2 -9 184 2 4 739 9061 196 40 30 chr12 20248136 20249133 -101008397 + MurSatRep1 Unknown Unknown 1127 2135 -2 4 739 560 312 46 30 chr12 20249270 20249330 -101008200 + MurSatRep1 Unknown Unknown 1691 1757 -380 4 739 458 257 22 22 chr12 20249330 20249469 -101008061 + MMSAT4 Satellite Satellite 30 168 0 4 739 560 312 46 30 chr12 20249469 20249726 -101007804 + MurSatRep1 Unknown Unknown 1758 2049 -88 4 739 586 306 67 35 chr12 20249710 20250143 -101007387 + MurSatRep1 Unknown Unknown 1691 2137 0 4 739 508 310 75 47 chr12 20250130 20250902 -101006628 + MurSatRep1 Unknown Unknown 1691 2137 0 4 739 239 324 0 0 chr12 20250842 20250944 -101006586 + MMSAT4 Satellite Satellite 30 131 -37 4 739 2901 87 2 19 chr12 20250947 20251358 -101006172 + L1_Mus1 LINE L1 6163 6566 -1 4 739 396 296 78 54 chr12 20251375 20251671 -101005859 + MurSatRep1 Unknown Unknown 1835 2137 0 4 739 274 299 36 29 chr12 20251614 20251752 -101005778 + MMSAT4 Satellite Satellite 30 168 0 4 739 330 269 0 0 chr12 20251968 20252046 -101005484 + MTD LTR MaLR 293 370 -14 4 739 905 134 28 0 chr12 20252344 20252486 -101005044 + B1_Mus1 SINE Alu 3 148 0 4 739 2220 236 66 12 chr12 20252703 20253630 -101003900 - L1_Mur3 LINE L1 -3798 2082 1087 4 739 464 253 47 29 chr12 20253615 20253786 -101003744 - L1_Mur3 LINE L1 -6507 1221 1048 4 739 237 236 61 70 chr12 20254238 20254352 -101003178 - Charlie11 DNA MER1_type -472 1724 1612 4 739 384 40 0 0 chr12 20254352 20254402 -101003128 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 739 186 43 0 0 chr12 20254404 20254427 -101003103 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 739 22 35 0 0 chr12 20254448 20254477 -101003053 + AT_rich Low_complexity Low_complexity 1 29 0 4 739 635 217 52 8 chr12 20254493 20254662 -101002868 - Lx2B LINE L1 -176 6800 6625 4 739 194 105 26 0 chr12 20254735 20254773 -101002757 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 4 739 382 179 0 15 chr12 20254805 20254941 -101002589 + (TA)n Simple_repeat Simple_repeat 1 134 0 4 739 261 119 0 0 chr12 20254942 20254984 -101002546 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 4 739 676 299 44 91 chr12 20255167 20255378 -101002152 + RLTR11A2 LTR ERVK 134 334 -193 4 739 1210 62 0 0 chr12 20255378 20255524 -101002006 + B1_Mm SINE Alu 2 147 0 4 739 676 299 44 91 chr12 20255524 20255632 -101001898 + RLTR11A2 LTR ERVK 335 438 -89 4 739 181 223 20 26 chr12 20255642 20255794 -101001736 + T-rich Low_complexity Low_complexity 3 153 0 4 739 204 125 0 0 chr12 20255833 20255865 -101001665 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 739 337 192 24 16 chr12 20256092 20256219 -101001311 + (CA)n Simple_repeat Simple_repeat 1 128 0 4 739 439 226 30 4 chr12 20256239 20256506 -101001024 + (CA)n Simple_repeat Simple_repeat 1 274 0 4 739 2903 47 0 0 chr12 20256975 20257316 -101000214 - IAPLTR4 LTR ERVK -4 341 1 4 739 4554 199 15 16 chr12 20257316 20258192 -100999338 - IAPLTR3-int LTR ERVK -20 6801 5927 4 739 3381 92 0 4 chr12 20258175 20258631 -100998899 - MMERVK10C-int LTR ERVK -1367 6214 5761 4 739 3425 79 2 16 chr12 20258619 20259068 -100998462 - MMERVK10C-int LTR ERVK -1936 5645 5203 4 739 807 88 35 56 chr12 20259322 20259466 -100998064 - MMERVK10C-int LTR ERVK -2911 4670 4530 4 739 480 184 12 36 chr12 20259478 20259603 -100997927 - MMERVK10C-int LTR ERVK -2380 2464 2357 4 739 3260 149 154 2 chr12 20259608 20260220 -100997310 - ETnERV2-int LTR ERVK -3135 4271 3567 4 739 570 257 372 29 chr12 20260246 20260469 -100997061 - ETnERV2-int LTR ERVK -4653 2753 2454 4 739 464 212 88 0 chr12 20260485 20260598 -100996932 - RLTR45-int LTR ERVK -5077 1060 938 4 739 251 260 74 49 chr12 20260601 20260682 -100996848 - RLTR45-int LTR ERVK -5469 668 586 4 739 746 103 19 111 chr12 20260722 20260912 -100996618 - RLTR45-int LTR ERVK -4937 2307 2175 4 739 339 237 39 49 chr12 20260910 20261012 -100996518 - RLTR45-int LTR ERVK -5055 351 251 4 739 830 213 45 45 chr12 20261114 20261360 -100996170 - IAPLTR3-int LTR ERVK -5755 1066 821 4 739 750 136 22 22 chr12 20261359 20261494 -100996036 - IAPLTR3-int LTR ERVK -6686 135 1 4 739 2884 52 0 17 chr12 20261494 20261845 -100995685 - IAPLTR4 LTR ERVK 0 345 1 4 739 238 241 179 8 chr12 20261870 20261987 -100995543 + L1MC1 LINE L1 6012 6148 -196 4 739 385 190 265 8 chr12 20262014 20262131 -100995399 + L1MC1 LINE L1 6187 6333 0 4 739 2119 122 51 0 chr12 20262141 20262477 -100995053 + L1_Mus3 LINE L1 6279 6631 -7 4 739 729 268 24 0 chr12 20262485 20262649 -100994881 + B3A SINE B2 1 168 -30 4 739 277 280 125 31 chr12 20263044 20263233 -100994297 + MIR SINE MIR 2 208 -60 4 739 216 0 0 0 chr12 20263833 20263857 -100993673 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 739 572 0 15 0 chr12 20263857 20263924 -100993606 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 739 181 290 105 68 chr12 20265434 20265567 -100991963 - L2a LINE L2 -191 3235 3098 4 739 308 275 120 11 chr12 20267445 20267528 -100990002 + PB1D10 SINE Alu 12 105 -12 4 739 969 160 0 0 chr12 20267528 20267678 -100989852 + B1_Mur4 SINE Alu 1 150 0 4 739 836 270 14 28 chr12 20267727 20267944 -100989586 + ID_B1 SINE B4 3 216 -8 4 739 654 284 14 72 chr12 20268847 20269056 -100988474 + B4A SINE B4 24 220 -72 4 739 368 313 65 16 chr12 20269073 20269258 -100988272 + B3A SINE B2 2 195 -3 4 739 948 139 0 0 chr12 20269279 20269416 -100988114 + B1_Mur4 SINE Alu 1 137 -13 4 739 2342 90 0 58 chr12 20269547 20269890 -100987640 + ORR1A2 LTR MaLR 1 323 -4 4 739 232 227 0 0 chr12 20269901 20269945 -100987585 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 739 477 154 0 0 chr12 20269948 20270039 -100987491 + GA-rich Low_complexity Low_complexity 4 94 0 4 739 1337 56 6 0 chr12 20270039 20270218 -100987312 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 4 739 3256 93 4 28 chr12 20270325 20270798 -100986732 + MMETn-int LTR ERVK 4383 4844 0 5 739 1583 144 27 63 chr12 20270798 20271132 -100986398 + RLTRETN_Mm LTR ERVK 1 322 0 5 739 579 302 31 12 chr12 20271714 20271875 -100985655 - RSINE1 SINE B4 -1 164 1 5 739 353 288 53 8 chr12 20272338 20272471 -100985059 - MER33 DNA MER1_type 0 324 186 5 739 974 195 32 5 chr12 20272521 20272737 -100984793 - URR1B DNA MER1_type -3 222 1 5 739 204 222 0 0 chr12 20272950 20273022 -100984508 + GA-rich Low_complexity Low_complexity 1 72 0 5 739 564 15 0 0 chr12 20275335 20275400 -100982130 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 739 1130 69 23 0 chr12 20276395 20276569 -100980961 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 5 739 423 225 0 43 chr12 20277306 20277422 -100980108 - PB1D9 SINE Alu 0 120 10 5 739 282 260 189 87 chr12 20277311 20277496 -100980034 - ID_B1 SINE B4 -1 223 20 5 739 699 230 48 58 chr12 20277610 20277799 -100979731 + B3 SINE B2 28 214 -2 5 739 744 68 16 57 chr12 20277872 20277996 -100979534 + B1_Mm SINE Alu 22 140 -7 5 739 387 0 0 0 chr12 20277998 20278041 -100979489 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 5 739 207 0 0 0 chr12 20278042 20278065 -100979465 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 739 548 226 60 0 chr12 20278089 20278222 -100979308 + ID_B1 SINE B4 82 222 -2 5 739 248 49 49 0 chr12 20278432 20278473 -100979057 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 5 739 560 171 68 68 chr12 20278529 20278661 -100978869 - B1_Mus1 SINE Alu -12 136 5 5 739 668 200 8 0 chr12 20278688 20278813 -100978717 - ID_B1 SINE B4 -7 217 92 5 739 1722 26 0 0 chr12 20279403 20279596 -100977934 + B2_Mm1a SINE B2 1 193 0 5 739 1258 135 13 18 chr12 20280519 20280746 -100976784 + URR1A DNA MER1_type 1 226 0 5 739 234 0 0 0 chr12 20281514 20281540 -100975990 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 5 739 623 267 50 25 chr12 20281591 20281791 -100975739 + B4A SINE B4 2 206 -86 5 739 632 264 0 0 chr12 20282019 20282148 -100975382 + RSINE1 SINE B4 3 131 -34 5 739 216 250 0 0 chr12 20282823 20282875 -100974655 + G-rich Low_complexity Low_complexity 3 54 0 5 739 1708 164 10 10 chr12 20283094 20283408 -100974122 - MTC LTR MaLR 0 421 108 5 739 670 186 56 21 chr12 20283411 20283554 -100973976 + B1_Mur3 SINE Alu 2 149 0 5 739 849 123 0 0 chr12 20283558 20283696 -100973834 + (GGGA)n Simple_repeat Simple_repeat 4 141 0 5 739 546 82 0 0 chr12 20284991 20285076 -100972454 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 739 1215 67 0 0 chr12 20285087 20285266 -100972264 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 739 611 60 0 0 chr12 20285266 20285350 -100972180 - B2_Mm2 SINE B2 -109 86 3 5 739 348 225 0 0 chr12 20285433 20285504 -100972026 + PB1D10 SINE Alu 40 110 -7 5 739 448 188 12 0 chr12 20285516 20285596 -100971934 + RSINE1 SINE B4 53 133 -32 5 739 366 284 22 22 chr12 20285581 20285718 -100971812 + B1F1 SINE Alu 13 149 0 5 739 573 216 0 8 chr12 20285749 20285866 -100971664 + B3 SINE B2 15 130 -86 5 739 739 217 30 18 chr12 20286507 20286671 -100970859 - B3A SINE B2 -30 168 3 5 739 200 310 85 17 chr12 20286751 20286869 -100970661 + L2b LINE L2 3036 3161 -214 5 739 325 312 28 0 chr12 20287056 20287165 -100970365 + PB1D7 SINE Alu 3 114 -6 5 739 254 297 9 47 chr12 20287172 20287278 -100970252 - MIRb SINE MIR -149 119 18 5 739 518 0 16 0 chr12 20288321 20288383 -100969147 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 739 739 281 45 38 chr12 20288560 20288849 -100968681 + B4A SINE B4 2 292 0 5 739 269 139 0 0 chr12 20289129 20289172 -100968358 - URR1B DNA MER1_type 0 225 183 5 739 401 129 0 14 chr12 20289745 20289816 -100967714 + (GGGGA)n Simple_repeat Simple_repeat 2 71 0 5 739 679 180 47 0 chr12 20290148 20290276 -100967254 + B1_Mus1 SINE Alu 3 136 -12 5 739 566 14 0 14 chr12 20290276 20290348 -100967182 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 5 739 226 269 44 15 chr12 20290464 20290532 -100966998 + MLT1F2 LTR MaLR 207 276 -284 5 739 857 206 85 0 chr12 20290826 20291015 -100966515 + B3 SINE B2 3 207 -9 5 739 337 209 284 37 chr12 20291042 20291151 -100966379 + B1_Mur2 SINE Alu 1 136 -13 5 739 743 87 24 8 chr12 20291157 20291284 -100966246 + (GA)n Simple_repeat Simple_repeat 2 130 0 5 739 302 141 0 27 chr12 20291442 20291515 -100966015 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 5 739 408 55 0 0 chr12 20291515 20291570 -100965960 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 739 1825 76 0 0 chr12 20293468 20293717 -100963813 + LTRIS_Mus LTR ERV1 1 249 -338 5 739 1359 109 42 25 chr12 20293684 20293920 -100963610 - RMER17D2 LTR ERVK -569 240 1 5 739 642 283 13 60 chr12 20294340 20294573 -100962957 + ID_B1 SINE B4 3 224 0 5 739 1044 109 0 0 chr12 20294600 20294738 -100962792 + B1_Mus1 SINE Alu 1 138 -10 5 739 375 60 0 0 chr12 20294817 20294867 -100962663 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 739 385 353 77 0 chr12 20294910 20295117 -100962413 - L1MD LINE L1 -540 5819 5597 5 739 1158 75 0 0 chr12 20295144 20295291 -100962239 - B1_Mm SINE Alu 0 147 1 5 739 313 319 177 0 chr12 20295335 20295448 -100962082 - RSINE1 SINE B4 -29 136 4 5 739 3084 147 16 108 chr12 20295455 20296225 -100961305 + RMER17D2 LTR ERVK 1 699 -110 5 739 523 204 52 14 chr12 20296210 20296349 -100961181 - MT2A LTR ERVL -237 364 92 5 739 557 181 69 0 chr12 20296350 20296466 -100961064 - MT2A LTR ERVL -403 130 7 5 739 571 250 26 0 chr12 20296468 20296620 -100960910 - L1MD LINE L1 -670 5572 5417 5 739 675 262 16 21 chr12 20296634 20296804 -100960726 + B3A SINE B2 1 171 -27 5 739 555 53 0 0 chr12 20296804 20296879 -100960651 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 739 675 262 16 21 chr12 20296879 20296899 -100960631 + B3A SINE B2 172 190 -8 5 739 509 245 84 66 chr12 20296975 20297141 -100960389 - B3 SINE B2 -46 170 2 5 739 801 95 0 0 chr12 20297156 20297272 -100960258 + (TTTTC)n Simple_repeat Simple_repeat 3 118 0 5 739 994 110 0 14 chr12 20297281 20297428 -100960102 - B1_Mus2 SINE Alu -1 146 2 5 739 709 155 0 123 chr12 20297523 20297685 -100959845 - B1_Mus1 SINE Alu -6 142 1 5 739 818 240 37 33 chr12 20298096 20298311 -100959219 - MTD LTR MaLR -14 405 190 5 739 738 215 30 79 chr12 20298351 20298553 -100958977 - B3 SINE B2 -3 192 1 5 739 665 216 108 22 chr12 20298563 20298748 -100958782 - MTD LTR MaLR -218 201 1 5 739 452 248 115 20 chr12 20299370 20299518 -100958012 + RSINE1 SINE B4 2 163 -2 5 739 657 96 0 0 chr12 20299807 20299901 -100957629 + (GAA)n Simple_repeat Simple_repeat 2 95 0 5 739 412 240 72 77 chr12 20299917 20300152 -100957378 - RMER10A LTR ERVL -144 298 65 5 739 196 102 20 20 chr12 20300823 20300873 -100956657 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 5 739 182 231 93 37 chr12 20301340 20301394 -100956136 - MIR SINE MIR -61 147 91 5 739 2033 104 9 3 chr12 20301493 20301812 -100955718 + RLTR1C LTR ERV1 1 321 -182 5 739 2967 32 6 0 chr12 20301812 20302156 -100955374 + ORR1A0 LTR MaLR 1 346 0 5 739 712 59 0 0 chr12 20302156 20302257 -100955273 + ORR1A0-int LTR MaLR 1 101 -1691 5 739 557 198 184 29 chr12 20302294 20302533 -100954997 + RLTR10A LTR ERVK 136 411 0 5 739 11944 55 15 2 chr12 20302533 20304215 -100953315 + ORR1A0-int LTR MaLR 89 1792 0 5 739 2996 29 6 0 chr12 20304215 20304559 -100952971 + ORR1A0 LTR MaLR 1 346 0 5 739 1028 197 5 0 chr12 20304559 20304747 -100952783 + RLTR1C LTR ERV1 417 605 0 5 739 910 279 13 0 chr12 20305129 20305355 -100952175 - MTEa LTR MaLR -150 229 1 5 739 256 280 35 78 chr12 20305518 20305571 -100951959 + PB1D10 SINE Alu 5 51 -66 5 739 946 119 28 0 chr12 20305571 20305714 -100951816 - B1_Mus1 SINE Alu -1 147 1 5 739 256 280 35 78 chr12 20305714 20305776 -100951754 + PB1D10 SINE Alu 52 115 -2 5 739 1471 143 35 11 chr12 20305984 20306266 -100951264 + MTB LTR MaLR 1 289 -111 5 739 207 290 0 0 chr12 20306272 20306334 -100951196 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 739 269 139 0 0 chr12 20306368 20306411 -100951119 + MTC LTR MaLR 92 134 -287 5 739 505 301 79 50 chr12 20306973 20307253 -100950277 - B4A SINE B4 0 292 5 5 739 277 318 80 26 chr12 20307422 20307644 -100949886 + L2b LINE L2 3004 3242 -184 5 739 536 288 14 92 chr12 20307649 20307867 -100949663 + ID_B1 SINE B4 2 202 -22 5 739 678 25 0 0 chr12 20307872 20307952 -100949578 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 739 254 194 153 0 chr12 20308163 20308235 -100949295 - MER5A1 DNA MER1_type -71 95 13 5 739 998 126 6 0 chr12 20308734 20308893 -100948637 + B2_Mm1a SINE B2 1 160 -33 5 739 419 0 20 0 chr12 20308893 20308944 -100948586 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 5 739 478 191 38 0 chr12 20309189 20309294 -100948236 - Lx3B LINE L1 -3 6970 6862 5 739 1063 84 7 0 chr12 20309837 20309979 -100947551 + B1_Mm SINE Alu 5 147 0 5 739 438 114 0 0 chr12 20309983 20310053 -100947477 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 5 739 186 43 0 0 chr12 20310682 20310705 -100946825 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 739 366 256 94 36 chr12 20310705 20310843 -100946687 - B1F SINE Alu -3 146 1 5 739 191 36 36 0 chr12 20310947 20310975 -100946555 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 739 964 311 82 115 chr12 20311218 20311925 -100945605 - MER63C DNA AcHobo -5 925 242 5 739 664 164 20 85 chr12 20312194 20312217 -100945313 + B1_Mur1 SINE Alu 1 16 -133 5 739 1553 62 5 0 chr12 20312217 20312409 -100945121 - B2_Mm1a SINE B2 0 193 1 5 739 664 164 20 85 chr12 20312409 20312538 -100944992 + B1_Mur1 SINE Alu 17 143 -6 5 739 676 200 74 151 chr12 20312719 20312871 -100944659 + B3 SINE B2 45 201 -15 5 739 186 240 0 0 chr12 20312892 20312942 -100944588 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 739 404 217 143 162 chr12 20312951 20313029 -100944501 + B3 SINE B2 2 99 -117 5 739 867 139 20 14 chr12 20313029 20313175 -100944355 + B1_Mus1 SINE Alu 2 148 0 5 739 404 217 143 162 chr12 20313175 20313250 -100944280 + B3 SINE B2 100 152 -64 5 739 479 259 9 0 chr12 20314138 20314250 -100943280 - PB1D9 SINE Alu -6 114 2 6 739 1033 89 0 40 chr12 20314300 20314438 -100943092 + B1_Mus2 SINE Alu 2 138 -9 6 739 258 32 0 0 chr12 20314438 20314469 -100943061 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 739 1033 89 0 40 chr12 20314469 20314482 -100943048 + B1_Mus2 SINE Alu 139 147 0 6 739 1304 219 136 8 chr12 20314887 20315255 -100942275 - MTD LTR MaLR 0 419 5 6 739 332 362 40 13 chr12 20315480 20315704 -100941826 - MER46C DNA MER2_type -1 337 108 6 739 782 190 0 14 chr12 20315738 20315882 -100941648 - B1_Mur3 SINE Alu -6 143 2 6 739 370 235 12 0 chr12 20316001 20316082 -100941448 + ID2 SINE ID 2 83 0 6 92 843 163 0 0 chr12 20316143 20316420 -100941110 + (TG)n Simple_repeat Simple_repeat 1 277 0 6 740 22 0 0 0 chr12 20318012 20318034 -100939496 + GC_rich Low_complexity Low_complexity 1 22 0 6 740 431 264 137 30 chr12 20319893 20320061 -100937469 - B3A SINE B2 -10 188 3 6 740 396 55 0 0 chr12 20320338 20320393 -100937137 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 740 981 82 22 7 chr12 20320393 20320529 -100937001 - B1_Mus2 SINE Alu -9 138 1 6 740 593 160 210 0 chr12 20320600 20320781 -100936749 + Lx9 LINE L1 7425 7643 -1 6 740 555 99 0 0 chr12 20321393 20321474 -100936056 + MTA_Mm LTR MaLR 314 394 -2 6 740 573 78 0 0 chr12 20321474 20321550 -100935980 - RLTR9D LTR ERVK -327 76 1 6 740 201 74 0 0 chr12 20321754 20321781 -100935749 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6 740 468 335 62 44 chr12 20321800 20322106 -100935424 + MTE-int LTR MaLR 24 361 -1219 6 740 4714 239 83 17 chr12 20322147 20323477 -100934053 - Lx4B LINE L1 -4 7054 5637 6 740 1171 313 78 50 chr12 20323487 20324205 -100933325 + MTE-int LTR MaLR 562 1421 -159 6 740 203 194 0 0 chr12 20324264 20324300 -100933230 + T-rich Low_complexity Low_complexity 1 36 0 6 740 289 236 18 45 chr12 20324309 20324420 -100933110 - Lx4B LINE L1 -4 7054 6947 6 740 237 335 90 45 chr12 20324546 20324746 -100932784 - B3 SINE B2 0 216 8 6 740 645 211 14 0 chr12 20324853 20325000 -100932530 + MurSatRep1 Unknown Unknown 2 150 -1987 6 740 346 306 65 0 chr12 20325002 20325126 -100932404 - B1_Mur2 SINE Alu -17 132 1 6 740 8008 198 32 35 chr12 20325126 20325977 -100931553 + MurSatRep1 Unknown Unknown 284 1126 -1011 6 740 1153 148 6 0 chr12 20325977 20326160 -100931370 - B2_Mm1a SINE B2 -8 185 2 6 740 8008 198 32 35 chr12 20326160 20327167 -100930363 + MurSatRep1 Unknown Unknown 1127 2135 -2 6 740 342 362 23 23 chr12 20327208 20327508 -100930022 + MurSatRep1 Unknown Unknown 1750 2049 -88 6 740 457 284 19 19 chr12 20327364 20327750 -100929780 + MMSAT4 Satellite Satellite 1 386 0 6 740 533 310 52 42 chr12 20327541 20328433 -100929097 + MurSatRep1 Unknown Unknown 1691 2137 0 6 740 475 296 0 0 chr12 20328360 20328596 -100928934 + MMSAT4 Satellite Satellite 1 236 0 6 740 354 322 24 109 chr12 20328466 20328646 -100928884 + MurSatRep1 Unknown Unknown 1747 1921 -216 6 740 2969 96 0 2 chr12 20328646 20329052 -100928478 + L1_Mus1 LINE L1 6163 6567 0 6 740 354 322 24 109 chr12 20329052 20329071 -100928459 + MurSatRep1 Unknown Unknown 1922 2044 -88 6 740 388 280 8 8 chr12 20329071 20329197 -100928333 + MMSAT4 Satellite Satellite 43 168 0 6 740 225 237 0 0 chr12 20329472 20329531 -100927999 + ORR1C2 LTR MaLR 312 370 -14 6 740 915 132 21 0 chr12 20329823 20329967 -100927563 + B1_Mus1 SINE Alu 2 148 0 6 740 300 35 0 0 chr12 20329974 20330016 -100927514 - L1M4 LINE L1 -2402 3744 3680 6 740 2528 17 0 0 chr12 20330013 20330303 -100927227 + L1_Mm LINE L1 3695 3984 -1899 6 740 691 177 43 0 chr12 20330331 20330472 -100927058 + B1_Mus1 SINE Alu 2 148 0 6 740 2218 247 59 26 chr12 20330655 20331667 -100925863 - L1_Mur3 LINE L1 -3738 2142 1088 6 740 467 265 29 35 chr12 20331652 20331824 -100925706 - L1_Mur3 LINE L1 -6510 1218 1048 6 740 579 122 0 0 chr12 20332391 20332481 -100925049 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 740 28 0 0 0 chr12 20332503 20332531 -100924999 + AT_rich Low_complexity Low_complexity 1 28 0 6 740 586 225 59 12 chr12 20332542 20332715 -100924815 - Lx2B LINE L1 -212 6796 6623 6 740 376 221 25 0 chr12 20332757 20332879 -100924651 + (TCTA)n Simple_repeat Simple_repeat 1 125 0 6 740 368 186 11 28 chr12 20332882 20333064 -100924466 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 740 279 54 0 0 chr12 20333068 20333105 -100924425 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 6 740 554 299 43 20 chr12 20333289 20333498 -100924032 + RLTR11A2 LTR ERVK 132 346 -181 6 740 1033 122 0 0 chr12 20333498 20333645 -100923885 + B1_Mm SINE Alu 1 147 0 6 740 447 321 42 108 chr12 20333645 20333767 -100923763 + RLTR11A2 LTR ERVK 334 441 -87 6 740 183 186 0 44 chr12 20333793 20333883 -100923647 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 6 740 201 164 18 35 chr12 20333883 20333940 -100923590 + (TTA)n Simple_repeat Simple_repeat 2 57 0 6 740 470 173 22 8 chr12 20334187 20334321 -100923209 + (CA)n Simple_repeat Simple_repeat 1 136 0 6 740 397 221 30 0 chr12 20334339 20334651 -100922879 + (CA)n Simple_repeat Simple_repeat 1 321 0 6 740 246 248 44 44 chr12 20334655 20334769 -100922761 - L1M1 LINE L1 -401 5899 5786 6 740 339 189 290 9 chr12 20335280 20335387 -100922143 + L1MC1 LINE L1 6197 6333 0 6 740 2215 110 54 0 chr12 20335397 20335733 -100921797 + L1_Mus3 LINE L1 6279 6632 -6 6 740 737 279 23 0 chr12 20335741 20335913 -100921617 + B3A SINE B2 1 176 -22 6 740 252 303 72 38 chr12 20336303 20336492 -100921038 + MIR SINE MIR 2 208 -60 6 740 296 256 12 12 chr12 20337090 20337173 -100920357 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 740 1977 70 0 93 chr12 20338117 20338430 -100919100 - RLTR10B LTR ERVK 0 292 9 6 740 270 56 0 0 chr12 20338430 20338466 -100919064 - RLTR10B LTR ERVK -256 36 1 6 740 7115 64 3 61 chr12 20338466 20339454 -100918076 - MMERVK10C-int LTR ERVK 0 7581 6651 6 740 2764 110 7 5 chr12 20339445 20339859 -100917671 - MMERVK10C-int LTR ERVK -1771 5810 5002 6 740 3356 140 120 44 chr12 20340089 20340908 -100916622 - RLTR10-int LTR ERVK -1076 911 1 6 740 2152 41 0 133 chr12 20340908 20341245 -100916285 - RLTR10B LTR ERVK 0 292 1 6 740 324 176 162 0 chr12 20343774 20343842 -100913688 + PB1D10 SINE Alu 25 103 -14 6 740 812 193 0 20 chr12 20343844 20343997 -100913533 + B1_Mur4 SINE Alu 1 150 0 6 740 784 226 28 37 chr12 20344021 20344237 -100913293 + ID_B1 SINE B4 3 216 -8 6 740 673 259 19 72 chr12 20345132 20345340 -100912190 + B4A SINE B4 24 220 -72 6 740 506 302 38 1 chr12 20345357 20345532 -100911998 + B3A SINE B2 2 189 -27 6 740 972 140 0 0 chr12 20345563 20345699 -100911831 + B1_Mur4 SINE Alu 1 136 -14 6 740 534 114 0 0 chr12 20345786 20345874 -100911656 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 740 2227 100 0 70 chr12 20345874 20346217 -100911313 + ORR1A2 LTR MaLR 5 323 -4 6 740 390 186 0 0 chr12 20346255 20346341 -100911189 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 740 612 262 33 13 chr12 20347038 20347189 -100910341 - RSINE1 SINE B4 -1 164 11 6 740 366 281 54 8 chr12 20347683 20347812 -100909718 - MER33 DNA MER1_type -1 323 189 6 740 713 191 191 5 chr12 20347863 20348052 -100909478 - URR1B DNA MER1_type -1 224 1 6 740 198 179 0 0 chr12 20348258 20348314 -100909216 + GA-rich Low_complexity Low_complexity 2 57 0 6 740 381 162 27 0 chr12 20350621 20350732 -100906798 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 740 476 219 8 0 chr12 20351652 20351780 -100905750 + CT-rich Low_complexity Low_complexity 4 132 0 6 740 256 280 93 93 chr12 20352341 20352534 -100904996 - RLTR25A LTR ERVK -5 1098 906 6 740 464 194 36 5 chr12 20352499 20352610 -100904920 - B1_Mur3 SINE Alu 0 120 13 6 740 228 235 22 120 chr12 20352528 20352620 -100904910 - MT2B LTR ERVL -354 247 165 6 740 735 232 49 41 chr12 20352781 20352989 -100904541 + B3 SINE B2 1 216 0 6 740 531 244 72 22 chr12 20353021 20353193 -100904337 + ID_B1 SINE B4 44 223 -69 6 740 546 57 0 0 chr12 20353390 20353460 -100904070 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 740 315 0 0 0 chr12 20353477 20353512 -100904018 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 740 504 274 16 24 chr12 20353512 20353639 -100903891 - B1_Mus1 SINE Alu -22 126 1 6 740 817 155 16 0 chr12 20353661 20353790 -100903740 - ID_B1 SINE B4 -6 218 88 6 740 193 109 0 42 chr12 20355039 20355087 -100902443 + G-rich Low_complexity Low_complexity 2 47 0 6 740 214 317 82 16 chr12 20355194 20355316 -100902214 + MIRb SINE MIR 14 143 -125 6 740 2436 138 21 47 chr12 20355318 20355635 -100901895 - MTC LTR MaLR 0 421 116 6 740 756 170 49 21 chr12 20355635 20355779 -100901751 + B1_Mur3 SINE Alu 2 149 0 6 740 561 68 0 0 chr12 20355783 20355857 -100901673 + (GGGA)n Simple_repeat Simple_repeat 4 77 0 6 740 2436 138 21 47 chr12 20355857 20355959 -100901571 - MTC LTR MaLR -306 115 8 6 740 1388 84 5 35 chr12 20356563 20356761 -100900769 + B2_Mm2 SINE B2 2 193 -2 6 740 765 219 94 26 chr12 20357340 20357532 -100899998 - B3 SINE B2 -8 208 4 6 740 893 153 21 0 chr12 20357559 20357703 -100899827 - B1_Mus1 SINE Alu -1 147 1 6 740 1434 153 0 5 chr12 20357734 20357957 -100899573 + URR1B DNA MER1_type 1 222 -3 6 740 721 280 113 45 chr12 20357960 20358270 -100899260 + MTE2a LTR MaLR 35 365 -14 6 740 342 355 47 0 chr12 20358377 20358484 -100899046 + RSINE1 SINE B4 34 145 -20 6 740 747 52 0 0 chr12 20358487 20358583 -100898947 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 740 362 21 21 0 chr12 20358583 20358629 -100898901 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 740 657 229 271 14 chr12 20360011 20360303 -100897227 - MTC LTR MaLR 0 421 50 6 740 309 226 0 0 chr12 20360353 20360406 -100897124 + RSINE1 SINE B4 82 134 -31 6 740 466 260 55 8 chr12 20360399 20360527 -100897003 + B1F1 SINE Alu 16 149 0 6 740 637 222 14 40 chr12 20360558 20360749 -100896781 + B3 SINE B2 15 195 0 6 740 1597 147 25 95 chr12 20360893 20361209 -100896321 + ORR1B1 LTR MaLR 41 334 -60 6 740 2123 54 44 51 chr12 20361209 20361503 -100896027 + RLTR10B LTR ERVK 1 292 0 6 740 1687 74 10 12 chr12 20361503 20361823 -100895707 + MMERVK10C-int LTR ERVK 1 399 -7182 6 740 40035 64 2 4 chr12 20361821 20366769 -100890761 + MMERVK10C-int LTR ERVK 870 5810 -1771 6 740 4628 90 5 14 chr12 20366760 20367770 -100889760 + MMERVK10C-int LTR ERVK 6651 7680 0 6 740 280 56 0 0 chr12 20367770 20367806 -100889724 + RLTR10B LTR ERVK 1 36 -256 6 740 2115 63 0 50 chr12 20367806 20368105 -100889425 + RLTR10B LTR ERVK 9 292 0 6 740 307 200 0 0 chr12 20368105 20368156 -100889374 + ORR1B1 LTR MaLR 344 394 0 6 740 715 172 16 27 chr12 20368724 20368876 -100888654 + B1_Mur4 SINE Alu 1 150 0 6 740 1404 62 39 11 chr12 20368886 20369067 -100888463 + B2_Mm2 SINE B2 1 186 -9 7 740 261 146 20 20 chr12 20369249 20369298 -100888232 - B1_Mur4 SINE Alu -95 55 7 7 740 417 225 45 0 chr12 20369323 20369412 -100888118 - PB1D10 SINE Alu -8 109 17 7 740 1187 235 19 19 chr12 20369500 20369769 -100887761 - B4 SINE B4 -19 273 5 7 740 574 281 7 7 chr12 20370024 20370160 -100887370 + ID_B1 SINE B4 64 199 -25 7 740 429 20 0 0 chr12 20370189 20370239 -100887291 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 7 740 216 143 43 0 chr12 20370318 20370388 -100887142 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 7 740 569 14 14 0 chr12 20370450 20370520 -100887010 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 7 740 316 308 140 75 chr12 20370985 20371171 -100886359 + ID_B1 SINE B4 23 220 -4 7 740 343 256 0 37 chr12 20371181 20371262 -100886268 + ID4_ SINE ID 3 80 -3 7 740 12902 70 17 46 chr12 20371478 20373340 -100884190 - RLTR22_Mus LTR ERVK 0 1808 1 7 740 1495 90 53 22 chr12 20373365 20373592 -100883938 - MTC LTR MaLR -183 238 5 7 740 501 32 0 0 chr12 20373974 20374037 -100883493 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 740 250 258 105 77 chr12 20374291 20374472 -100883058 - MamRep605 Unknown Unknown -129 747 562 7 740 769 247 147 5 chr12 20374996 20375187 -100882343 + ID_B1 SINE B4 7 224 0 7 740 2147 155 65 3 chr12 20375274 20375642 -100881888 - MTC LTR MaLR -30 391 1 7 740 207 181 56 0 chr12 20375996 20376037 -100881493 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 7 740 458 118 11 0 chr12 20376037 20376130 -100881400 + (CATA)n Simple_repeat Simple_repeat 3 96 0 7 740 207 181 56 0 chr12 20376130 20376160 -100881370 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 7 740 814 226 33 23 chr12 20376609 20376821 -100880709 - B3A SINE B2 -1 215 3 7 740 236 257 71 0 chr12 20376901 20376971 -100880559 + L2b LINE L2 3036 3110 -265 7 740 1111 66 0 56 chr12 20376987 20377061 -100880469 + L1_Mus1 LINE L1 6411 6484 -83 7 740 3185 42 8 5 chr12 20377061 20377448 -100880082 + RLTR10 LTR ERVK 1 388 -2 7 740 1111 66 0 56 chr12 20377448 20377554 -100879976 + L1_Mus1 LINE L1 6485 6567 0 7 740 23 0 0 0 chr12 20377571 20377594 -100879936 + AT_rich Low_complexity Low_complexity 1 23 0 7 740 1151 98 0 0 chr12 20377759 20377922 -100879608 + L1_Mus2 LINE L1 6404 6566 0 7 740 328 279 77 0 chr12 20377981 20378085 -100879445 + PB1D7 SINE Alu 3 114 -6 7 740 306 325 8 41 chr12 20378092 20378214 -100879316 - MIRb SINE MIR -149 119 2 7 740 2159 78 9 51 chr12 20379351 20379687 -100877843 + RLTRETN_Mm LTR ERVK 1 322 0 7 740 29494 87 39 27 chr12 20379688 20384142 -100873388 + MMETn-int LTR ERVK 2 4508 -336 7 740 250 296 137 88 chr12 20384143 20384347 -100873183 + RLTR13A2 LTR ERVK 277 490 -468 7 740 849 147 0 7 chr12 20384347 20384484 -100873046 + MMETn-int LTR ERVK 4709 4844 0 7 740 2249 75 6 50 chr12 20384484 20384821 -100872709 + RLTRETN_Mm LTR ERVK 1 322 0 7 740 806 329 38 35 chr12 20384901 20385191 -100872339 + B4A SINE B4 2 292 0 7 740 905 126 0 14 chr12 20385474 20385619 -100871911 - URR1B DNA MER1_type 0 225 83 7 740 539 264 107 13 chr12 20386280 20386430 -100871100 + RSINE1 SINE B4 2 165 0 7 740 525 16 0 0 chr12 20386440 20386502 -100871028 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 740 600 279 124 53 chr12 20386619 20386774 -100870756 - RMER10A LTR ERVL 0 442 273 7 740 291 85 0 0 chr12 20386774 20386821 -100870709 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 7 740 600 279 124 53 chr12 20386821 20387021 -100870509 - RMER10A LTR ERVL -170 272 63 7 740 4183 59 16 2 chr12 20387526 20388038 -100869492 - MURVY-LTR LTR ERV1 0 519 1 7 740 363 248 56 42 chr12 20388071 20388214 -100869316 + MLT1N2 LTR MaLR 413 557 -5 7 740 191 291 73 0 chr12 20388608 20388663 -100868867 - MIRm SINE MIR -121 155 97 7 740 851 291 10 0 chr12 20389138 20389344 -100868186 - MTEa LTR MaLR -154 225 18 7 740 262 254 104 0 chr12 20389497 20389564 -100867966 + ID_B1 SINE B4 52 125 -99 7 740 236 286 38 67 chr12 20389524 20389577 -100867953 + PB1D10 SINE Alu 5 51 -66 7 740 978 130 7 0 chr12 20389577 20389723 -100867807 - B1_Mus1 SINE Alu -1 147 1 7 740 236 286 38 67 chr12 20389723 20389774 -100867756 + PB1D10 SINE Alu 52 106 -11 7 740 183 100 0 0 chr12 20389774 20389804 -100867726 + (CAA)n Simple_repeat Simple_repeat 2 31 0 7 740 243 0 0 0 chr12 20389886 20389913 -100867617 + (A)n Simple_repeat Simple_repeat 1 27 0 7 740 1772 103 34 3 chr12 20390009 20390300 -100867230 + MTB LTR MaLR 1 300 -100 7 740 308 119 0 0 chr12 20390593 20390635 -100866895 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 7 740 745 147 0 22 chr12 20390635 20390816 -100866714 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 7 740 278 242 45 0 chr12 20390846 20390912 -100866618 - ID4_ SINE ID -6 77 9 7 740 814 209 0 13 chr12 20390933 20391083 -100866447 - B1_Mur1 SINE Alu 0 149 2 7 740 843 127 7 0 chr12 20391135 20391277 -100866253 + B1_Mus1 SINE Alu 6 148 0 7 740 450 333 38 6 chr12 20391383 20391540 -100865990 - RSINE1 SINE B4 0 165 4 7 740 473 234 101 22 chr12 20391541 20391720 -100865810 + MTD-int LTR MaLR 1060 1252 -6 7 740 1641 181 85 3 chr12 20391733 20392098 -100865432 + MTD LTR MaLR 25 419 0 7 740 926 223 10 19 chr12 20392641 20392847 -100864683 - B3 SINE B2 -11 205 2 7 740 225 273 0 0 chr12 20393134 20393262 -100864268 + (TGGA)n Simple_repeat Simple_repeat 1 128 0 7 740 607 154 6 188 chr12 20393352 20393402 -100864128 + URR1A DNA MER1_type 68 112 -114 7 740 1155 70 7 0 chr12 20393402 20393545 -100863985 + B1_Mm SINE Alu 4 147 0 7 740 607 154 6 188 chr12 20393545 20393670 -100863860 + URR1A DNA MER1_type 113 211 -15 7 740 294 325 0 0 chr12 20394023 20394100 -100863430 - ID4_ SINE ID 0 83 7 7 740 325 275 11 11 chr12 20394135 20394227 -100863303 - PB1D10 SINE Alu -13 104 13 7 740 495 281 13 40 chr12 20394426 20394578 -100862952 - B1F SINE Alu 0 149 2 7 740 1321 209 161 6 chr12 20394605 20394928 -100862602 - ORR1D1 LTR MaLR -1 373 1 7 740 213 65 0 0 chr12 20395151 20395182 -100862348 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 7 740 1037 75 0 126 chr12 20395182 20395364 -100862166 - B2_Mm1t SINE B2 -34 159 1 7 740 193 220 60 0 chr12 20395526 20395576 -100861954 - L2c LINE L2 -71 3316 3264 7 740 1903 164 59 24 chr12 20396173 20396548 -100860982 - MTC LTR MaLR -33 388 1 7 740 189 0 0 0 chr12 20396604 20396625 -100860905 + (TTG)n Simple_repeat Simple_repeat 1 21 0 7 740 527 29 14 0 chr12 20397058 20397127 -100860403 + (TTTTG)n Simple_repeat Simple_repeat 3 72 0 7 740 731 53 0 0 chr12 20397127 20397222 -100860308 - B1_Mm SINE Alu -11 136 42 7 740 234 212 55 78 chr12 20397138 20397174 -100860356 - RLTR25B LTR ERVK -507 521 463 7 740 254 64 0 130 chr12 20397174 20397228 -100860302 - 4.5SRNA scRNA scRNA -8 86 40 7 740 234 212 55 78 chr12 20397228 20397266 -100860264 - RLTR25B LTR ERVK -507 462 397 7 740 375 154 0 0 chr12 20397339 20397404 -100860126 + (TCTCTG)n Simple_repeat Simple_repeat 1 65 0 7 740 413 50 0 32 chr12 20397406 20397468 -100860062 - B1_Mus1 SINE Alu -88 60 1 7 740 321 206 31 52 chr12 20397468 20397501 -100860029 - ID_B1 SINE B4 -77 145 53 7 740 716 159 210 90 chr12 20398271 20398471 -100859059 + URR1B DNA MER1_type 2 225 0 7 740 1087 190 19 0 chr12 20398509 20398720 -100858810 - B3 SINE B2 0 216 2 7 740 1226 286 8 64 chr12 20402003 20402036 -100855494 + ORR1D2 LTR MaLR 1 33 -337 7 740 1103 146 97 10 chr12 20402036 20402243 -100855287 - URR1B DNA MER1_type 0 225 1 7 740 1226 286 8 64 chr12 20402243 20402597 -100854933 + ORR1D2 LTR MaLR 34 366 -4 7 740 1463 255 48 5 chr12 20402885 20403283 -100854247 + MTD LTR MaLR 2 416 -3 7 740 566 238 95 38 chr12 20404331 20404541 -100852989 - ID_B1 SINE B4 0 224 3 7 740 340 286 218 0 chr12 20405206 20405339 -100852191 + B3A SINE B2 8 169 -29 7 740 390 100 0 0 chr12 20405352 20405412 -100852118 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 740 561 186 10 10 chr12 20405437 20405540 -100851990 + B1_Mur2 SINE Alu 7 109 -40 7 740 488 282 17 0 chr12 20405747 20405864 -100851666 + RSINE1 SINE B4 3 121 -44 7 740 1348 75 16 0 chr12 20405865 20406051 -100851479 + B2_Mm2 SINE B2 1 189 -6 7 740 21 57 0 0 chr12 20406145 20406180 -100851350 + AT_rich Low_complexity Low_complexity 1 35 0 7 740 207 146 0 0 chr12 20406211 20406252 -100851278 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 7 740 305 263 13 13 chr12 20406742 20406819 -100850711 + ID2 SINE ID 2 78 -5 7 740 648 56 0 0 chr12 20407029 20407118 -100850412 + (CA)n Simple_repeat Simple_repeat 1 89 0 7 740 186 302 122 44 chr12 20407158 20407248 -100850282 - L2b LINE L2 -51 3324 3228 7 740 320 297 103 95 chr12 20407258 20407500 -100850030 - ORR1E LTR MaLR 0 359 116 7 740 941 146 0 0 chr12 20407809 20407953 -100849577 - B1_Mur1 SINE Alu 0 149 6 7 740 271 267 13 39 chr12 20408043 20408121 -100849409 + RSINE1 SINE B4 50 125 -40 7 740 1519 77 0 5 chr12 20408209 20408404 -100849126 + B2_Mm2 SINE B2 1 194 -1 7 740 2100 160 19 42 chr12 20409032 20409457 -100848073 - MTC LTR MaLR -6 415 1 7 740 506 288 68 0 chr12 20410447 20410579 -100846951 - RSINE1 SINE B4 -4 161 21 7 740 391 86 0 0 chr12 20410950 20411008 -100846522 + RMER6D LTR ERVK 1 58 -662 7 740 315 182 0 0 chr12 20411253 20411308 -100846222 + B3 SINE B2 70 124 -92 7 740 515 286 0 13 chr12 20411759 20411908 -100845622 - B1_Mm SINE Alu 0 147 1 7 740 338 74 19 0 chr12 20412088 20412142 -100845388 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 7 740 1356 203 98 88 chr12 20412278 20412631 -100844899 + MTD LTR MaLR 16 376 -43 7 740 725 175 33 47 chr12 20412631 20412781 -100844749 - B1_Mus1 SINE Alu 0 148 1 7 740 1356 203 98 88 chr12 20412781 20412827 -100844703 + MTD LTR MaLR 377 419 0 7 740 279 116 0 0 chr12 20413048 20413091 -100844439 + MTC LTR MaLR 92 134 -287 7 740 388 105 13 13 chr12 20413631 20413708 -100843822 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 740 625 263 92 42 chr12 20413737 20413975 -100843555 - B4A SINE B4 -38 254 5 8 740 519 268 81 0 chr12 20414103 20414226 -100843304 + ETnERV2-int LTR ERVK 7070 7202 -204 8 740 283 343 44 7 chr12 20414675 20414810 -100842720 + L2b LINE L2 3022 3161 -214 8 740 520 301 9 87 chr12 20414885 20415103 -100842427 + ID_B1 SINE B4 2 202 -22 8 740 245 194 153 0 chr12 20415335 20415407 -100842123 - MER5A1 DNA MER1_type -71 95 13 8 740 1069 107 6 0 chr12 20415902 20416061 -100841469 + B2_Mm1a SINE B2 1 160 -33 8 740 468 0 0 0 chr12 20416061 20416113 -100841417 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 8 740 392 240 41 8 chr12 20416355 20416477 -100841053 - Lx3B LINE L1 0 6973 6848 8 740 417 241 85 28 chr12 20417617 20417758 -100839772 - B1F SINE Alu 0 149 1 8 740 213 94 0 0 chr12 20417857 20417889 -100839641 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 8 740 1036 306 82 113 chr12 20418132 20418840 -100838690 - MER63C DNA AcHobo -5 925 240 8 740 402 222 12 0 chr12 20419159 20419240 -100838290 + ID2 SINE ID 2 83 0 8 740 747 162 0 0 chr12 20419297 20419535 -100837995 + (TG)n Simple_repeat Simple_repeat 1 238 0 8 740 216 0 0 0 chr12 20420552 20420576 -100836954 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 8 740 31 26 0 0 chr12 20421441 20421479 -100836051 + GC_rich Low_complexity Low_complexity 1 38 0 8 740 243 61 0 0 chr12 20425817 20425850 -100831680 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 740 249 278 0 40 chr12 20425911 20426012 -100831518 - B4A SINE B4 -195 97 1 8 740 240 378 15 30 chr12 20427479 20427610 -100829920 - MER3 DNA MER1_type -78 131 3 8 740 231 347 31 0 chr12 20427675 20427773 -100829757 + MER5A1 DNA MER1_type 66 166 0 8 740 187 274 11 56 chr12 20427847 20427936 -100829594 - MER5B DNA MER1_type -62 116 32 8 740 471 279 15 8 chr12 20428391 20428521 -100829009 - B3A SINE B2 -65 133 3 8 740 224 131 48 32 chr12 20428788 20428851 -100828679 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 8 740 1099 91 0 0 chr12 20428862 20429005 -100828525 - B1_Mm SINE Alu -4 143 1 8 740 830 196 173 0 chr12 20429057 20429282 -100828248 + Lx9 LINE L1 7381 7644 0 8 740 782 245 66 24 chr12 20429618 20429831 -100827699 - ID_B1 SINE B4 -2 222 1 8 740 294 100 33 16 chr12 20430358 20430419 -100827111 + (GGA)n Simple_repeat Simple_repeat 3 64 0 8 740 233 240 130 16 chr12 20430438 20430561 -100826969 + Lx8 LINE L1 7335 7471 -2 8 740 198 100 0 104 chr12 20430633 20430700 -100826830 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 8 740 289 306 55 89 chr12 20430739 20430976 -100826554 + MT2A LTR ERVL 74 302 -231 8 740 5011 116 43 32 chr12 20431557 20432060 -100825470 - RMER17D LTR ERVK -2 887 369 8 740 695 11 23 0 chr12 20432060 20432147 -100825383 + (GGAGA)n Simple_repeat Simple_repeat 2 90 0 8 740 5011 116 43 32 chr12 20432147 20432519 -100825011 - RMER17D LTR ERVK -521 368 3 8 740 509 239 9 117 chr12 20433081 20433294 -100824236 - L1_Mur3 LINE L1 -4044 1836 1647 8 740 424 271 100 0 chr12 20433307 20433536 -100823994 - L1_Mur3 LINE L1 -4315 1565 1314 8 740 482 256 19 34 chr12 20433833 20434039 -100823491 - L1_Mur3 LINE L1 -6622 1106 904 8 740 315 342 47 88 chr12 20435170 20435385 -100822145 + ORR1C2-int LTR MaLR 132 337 -1243 8 740 955 109 0 33 chr12 20435460 20435612 -100821918 - B1_Mus2 SINE Alu 0 147 1 8 740 6072 230 14 8 chr12 20435796 20437201 -100820329 - Lx4B LINE L1 -4 7054 5641 8 740 1256 326 37 41 chr12 20437216 20437920 -100819610 + ORR1C2-int LTR MaLR 562 1262 -108 8 740 308 238 61 38 chr12 20438021 20438152 -100819378 - Lx4B LINE L1 -4 7054 6921 8 740 250 345 82 25 chr12 20438270 20438466 -100819064 - B3 SINE B2 -7 209 3 8 740 637 211 14 0 chr12 20438560 20438707 -100818823 + MurSatRep1 Unknown Unknown 2 150 -1987 8 740 351 306 65 0 chr12 20438709 20438833 -100818697 - B1_Mur2 SINE Alu -17 132 1 8 740 8275 185 37 31 chr12 20438833 20439677 -100817853 + MurSatRep1 Unknown Unknown 284 1119 -1018 8 740 1264 117 5 0 chr12 20439677 20439865 -100817665 - B2_Mm1a SINE B2 -3 190 2 8 740 8275 185 37 31 chr12 20439865 20440862 -100816668 + MurSatRep1 Unknown Unknown 1120 2135 -2 8 740 488 281 16 13 chr12 20440975 20440999 -100816531 + MMSAT4 Satellite Satellite 1 37 -528 8 740 411 325 25 20 chr12 20440999 20441203 -100816327 + MurSatRep1 Unknown Unknown 1845 2049 -88 8 740 488 281 16 13 chr12 20441203 20441534 -100815996 + MMSAT4 Satellite Satellite 38 560 -5 8 740 514 294 60 50 chr12 20441404 20442295 -100815235 + MurSatRep1 Unknown Unknown 1691 2137 0 8 740 365 292 25 25 chr12 20442239 20442462 -100815068 + MMSAT4 Satellite Satellite 1 223 0 8 740 270 225 0 59 chr12 20442669 20442754 -100814776 + ORR1C2 LTR MaLR 291 370 -14 8 740 805 161 14 0 chr12 20443050 20443193 -100814337 + B1_Mus1 SINE Alu 2 146 -2 8 740 2155 237 82 8 chr12 20443457 20444366 -100813164 - L1_Mur3 LINE L1 -3798 2082 1088 8 740 412 264 41 29 chr12 20444352 20444524 -100813006 - L1_Mur3 LINE L1 -6507 1221 1048 8 740 239 239 14 0 chr12 20445026 20445097 -100812433 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 8 740 347 202 31 0 chr12 20445156 20445319 -100812211 + (TCTA)n Simple_repeat Simple_repeat 3 170 0 8 740 204 203 40 0 chr12 20445320 20445394 -100812136 + (TA)n Simple_repeat Simple_repeat 1 77 0 8 740 283 179 12 25 chr12 20445392 20445472 -100812058 + (TTA)n Simple_repeat Simple_repeat 2 80 0 8 740 306 190 41 8 chr12 20445699 20445821 -100811709 + (CA)n Simple_repeat Simple_repeat 1 126 0 8 740 487 201 24 6 chr12 20445868 20446038 -100811492 + (CA)n Simple_repeat Simple_repeat 1 173 0 8 740 339 189 290 9 chr12 20446695 20446802 -100810728 + L1MC1 LINE L1 6197 6333 0 8 740 2294 81 56 6 chr12 20446812 20447149 -100810381 + L1_Mus3 LINE L1 6279 6632 -6 8 92 696 289 23 0 chr12 20447157 20447330 -100810200 + B3A SINE B2 1 177 -21 8 741 253 291 110 24 chr12 20447718 20447907 -100809623 + MIR SINE MIR 2 208 -60 8 741 313 268 12 12 chr12 20448507 20448590 -100808940 + (CA)n Simple_repeat Simple_repeat 2 84 0 8 741 316 272 35 47 chr12 20451013 20451098 -100806432 - L1MEg LINE L1 -4155 1929 1846 8 741 9054 10 0 0 chr12 20451099 20452092 -100805438 - L1Md_T LINE L1 0 6582 5590 8 741 253 218 179 0 chr12 20453122 20453200 -100804330 + PB1D10 SINE Alu 6 97 -20 8 741 932 173 0 0 chr12 20453206 20453356 -100804174 + B1_Mur4 SINE Alu 1 150 0 8 741 913 212 28 42 chr12 20453403 20453620 -100803910 + ID_B1 SINE B4 3 216 -8 8 741 355 244 25 101 chr12 20454575 20454718 -100802812 + B4A SINE B4 108 241 -51 8 741 246 322 77 64 chr12 20454733 20454889 -100802641 + B3A SINE B2 38 195 -3 8 741 952 166 0 0 chr12 20454910 20455055 -100802475 + B1_Mur4 SINE Alu 1 145 -5 8 741 293 257 0 0 chr12 20455132 20455202 -100802328 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 741 2259 102 0 58 chr12 20455202 20455545 -100801985 + ORR1A2 LTR MaLR 1 323 -4 8 741 192 158 0 0 chr12 20455556 20455594 -100801936 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 741 186 43 0 0 chr12 20455594 20455617 -100801913 + (GAGAA)n Simple_repeat Simple_repeat 1 23 0 8 741 563 274 31 19 chr12 20456284 20456444 -100801086 - RSINE1 SINE B4 -3 162 1 8 741 377 266 61 23 chr12 20456909 20457040 -100800490 - MER33 DNA MER1_type 0 324 189 8 741 1115 172 37 5 chr12 20457091 20457307 -100800223 - URR1B DNA MER1_type -1 224 2 8 741 261 174 0 0 chr12 20457521 20457590 -100799940 + GA-rich Low_complexity Low_complexity 1 69 0 8 741 238 307 131 23 chr12 20459304 20459434 -100798096 - MLT1J1 LTR MaLR -18 426 283 8 741 228 108 81 0 chr12 20459755 20459792 -100797738 + RLTR13A LTR ERVK 816 855 0 8 741 460 139 43 9 chr12 20460248 20460364 -100797166 + CT-rich Low_complexity Low_complexity 1 120 0 8 741 428 236 19 9 chr12 20461086 20461193 -100796337 - PB1D9 SINE Alu 0 120 13 8 741 712 242 37 27 chr12 20461384 20461571 -100795959 + B3 SINE B2 28 216 0 8 741 953 73 16 0 chr12 20461646 20461770 -100795760 + B1_Mm SINE Alu 22 147 0 8 741 216 0 0 0 chr12 20461772 20461796 -100795734 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 741 539 212 68 8 chr12 20461806 20461939 -100795591 + ID_B1 SINE B4 82 222 -2 8 741 400 160 30 0 chr12 20462145 20462276 -100795254 + (TCTG)n Simple_repeat Simple_repeat 2 136 0 8 741 649 189 45 45 chr12 20462285 20462418 -100795112 - B1_Mur3 SINE Alu -13 136 4 8 741 737 188 26 7 chr12 20462430 20462572 -100794958 - ID_B1 SINE B4 -59 233 86 8 741 1375 143 9 18 chr12 20464064 20464292 -100793238 + URR1A DNA MER1_type 1 226 0 8 741 378 42 0 0 chr12 20465055 20465103 -100792427 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 8 741 657 249 61 25 chr12 20465148 20465346 -100792184 + B4A SINE B4 2 206 -86 8 741 701 217 0 0 chr12 20465577 20465697 -100791833 + RSINE1 SINE B4 6 125 -40 8 741 389 268 202 37 chr12 20465757 20465920 -100791610 - MER2 DNA MER2_type -149 196 7 8 741 234 303 81 18 chr12 20466313 20466424 -100791106 + MIRb SINE MIR 23 140 -128 8 741 2019 132 10 10 chr12 20466429 20466743 -100790787 - MTC LTR MaLR 0 421 108 8 741 720 191 49 14 chr12 20466746 20466889 -100790641 + B1_Mur3 SINE Alu 2 149 0 8 741 675 104 0 0 chr12 20466904 20467010 -100790520 + (GA)n Simple_repeat Simple_repeat 1 106 0 8 741 493 172 20 61 chr12 20468274 20468288 -100789242 - B3A SINE B2 -101 97 89 8 741 1188 22 0 0 chr12 20468288 20468427 -100789103 + (TC)n Simple_repeat Simple_repeat 2 140 0 8 741 647 71 0 0 chr12 20468427 20468511 -100789019 - B2_Mm2 SINE B2 -109 86 3 8 741 382 273 0 0 chr12 20468584 20468672 -100788858 + PB1D10 SINE Alu 30 117 0 8 741 453 212 12 0 chr12 20468677 20468757 -100788773 + RSINE1 SINE B4 53 133 -32 8 741 487 269 22 22 chr12 20468742 20468879 -100788651 + B1F1 SINE Alu 13 149 0 8 741 624 207 0 8 chr12 20468910 20469027 -100788503 + B3 SINE B2 15 130 -86 8 741 735 246 34 24 chr12 20469615 20469827 -100787703 - B3A SINE B2 -1 215 3 8 741 221 310 77 8 chr12 20469907 20470024 -100787506 + L2c LINE L2 3038 3162 -225 9 741 343 294 28 0 chr12 20470212 20470321 -100787209 + PB1D7 SINE Alu 3 114 -6 9 741 322 279 57 19 chr12 20470328 20470434 -100787096 - MIRb SINE MIR -149 119 10 9 741 663 299 36 32 chr12 20471771 20472051 -100785479 + B4A SINE B4 2 282 -10 9 741 928 126 0 0 chr12 20472343 20472486 -100785044 - URR1B DNA MER1_type 0 225 83 9 741 251 314 97 35 chr12 20473167 20473312 -100784218 - RMER15 LTR ERVL -6 569 416 9 741 311 249 3 33 chr12 20473561 20473661 -100783869 - MT2A LTR ERVL -496 105 9 9 741 894 256 14 53 chr12 20474146 20474440 -100783090 - MTE2b LTR MaLR 0 379 42 9 741 660 204 169 50 chr12 20474440 20474641 -100782889 + URR1A DNA MER1_type 1 225 -1 9 741 894 256 9 65 chr12 20474641 20474685 -100782845 - MTE2b LTR MaLR -338 41 1 9 741 398 133 0 26 chr12 20475490 20475567 -100781963 + G-rich Low_complexity Low_complexity 2 76 0 9 741 733 178 39 0 chr12 20475907 20476036 -100781494 + B1_Mus1 SINE Alu 3 136 -12 9 741 357 43 0 0 chr12 20476036 20476083 -100781447 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 9 741 288 270 124 111 chr12 20476148 20476348 -100781182 + MLT1F1 LTR MaLR 141 334 -226 9 741 774 216 99 10 chr12 20476571 20476763 -100780767 + B3 SINE B2 3 211 -5 9 741 337 248 141 33 chr12 20476790 20476911 -100780619 + B1_Mus2 SINE Alu 1 134 -13 9 741 830 87 0 28 chr12 20476918 20477060 -100780470 + (GGGAGA)n Simple_repeat Simple_repeat 3 140 0 9 741 942 117 0 0 chr12 20477224 20477403 -100780127 + (TC)n Simple_repeat Simple_repeat 1 179 0 9 741 315 0 0 0 chr12 20477403 20477437 -100780093 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 741 685 269 13 56 chr12 20479625 20479857 -100777673 + ID_B1 SINE B4 3 224 0 9 741 1059 101 0 0 chr12 20479889 20480027 -100777503 + B1_Mus1 SINE Alu 1 138 -10 9 741 357 24 0 0 chr12 20480101 20480143 -100777387 + (TC)n Simple_repeat Simple_repeat 2 43 0 9 741 243 0 0 0 chr12 20480143 20480169 -100777361 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 741 593 333 37 0 chr12 20480221 20480437 -100777093 - L1MD LINE L1 -539 5820 5597 9 741 407 283 177 0 chr12 20480487 20480600 -100776930 - RSINE1 SINE B4 -29 136 4 9 741 826 85 34 0 chr12 20480607 20480725 -100776805 + RMER17D2 LTR ERVK 1 122 -687 9 741 834 114 8 8 chr12 20480728 20480861 -100776669 + RMER17D2 LTR ERVK 673 805 -4 9 741 3902 76 0 41 chr12 20480861 20481012 -100776518 + RLTR1B LTR ERV1 1 144 -368 9 741 1214 62 0 0 chr12 20481012 20481158 -100776372 + B1_Mus2 SINE Alu 2 147 0 9 741 3902 76 0 41 chr12 20481158 20481540 -100775990 + RLTR1B LTR ERV1 145 512 0 9 741 1370 175 180 140 chr12 20481648 20482092 -100775438 - MT2A LTR ERVL -71 462 1 9 741 304 357 14 0 chr12 20482093 20482236 -100775294 - L1MC LINE L1 -2476 5566 5422 9 741 724 247 24 0 chr12 20482253 20482419 -100775111 + B3A SINE B2 1 170 -28 9 741 432 0 0 0 chr12 20482429 20482477 -100775053 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 741 576 208 99 99 chr12 20482548 20482740 -100774790 - B3 SINE B2 -23 193 2 9 741 230 175 36 36 chr12 20482748 20482831 -100774699 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 9 741 805 151 0 67 chr12 20482833 20482982 -100774548 - B1_Mus1 SINE Alu 0 148 10 9 741 942 223 39 19 chr12 20483368 20483574 -100773956 - MTD LTR MaLR -14 405 196 9 741 854 263 33 28 chr12 20483589 20483804 -100773726 - B3 SINE B2 0 216 1 9 741 796 189 41 25 chr12 20483804 20483999 -100773531 - MTD LTR MaLR -208 213 1 9 741 197 319 10 69 chr12 20484011 20484112 -100773418 - MIR3 SINE MIR -47 161 67 9 741 6107 69 33 4 chr12 20484118 20484903 -100772627 - RLTR13C2 LTR ERVK 0 808 1 9 741 485 246 139 14 chr12 20485425 20485569 -100771961 + RSINE1 SINE B4 2 163 -2 9 741 414 0 0 0 chr12 20485581 20485627 -100771903 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 741 429 233 109 60 chr12 20485634 20485817 -100771713 - RMER10A LTR ERVL -185 257 66 9 741 381 286 35 21 chr12 20486326 20486469 -100771061 + MLT1N2 LTR MaLR 413 557 -5 9 741 213 291 73 0 chr12 20486868 20486923 -100770607 - MIRm SINE MIR -121 155 97 9 741 2235 195 76 2 chr12 20487216 20487678 -100769852 + RLTR1 LTR ERV1 129 624 0 9 741 207 98 195 0 chr12 20487699 20487740 -100769790 - L3 LINE CR1 -3526 963 915 9 741 963 286 13 0 chr12 20487951 20488175 -100769355 - MTEa LTR MaLR -152 227 1 9 741 247 242 119 15 chr12 20488311 20488378 -100769152 + ID_B1 SINE B4 52 125 -99 9 741 264 255 37 93 chr12 20488347 20488391 -100769139 + PB1D10 SINE Alu 15 51 -66 9 741 972 124 14 0 chr12 20488391 20488536 -100768994 - B1_Mus1 SINE Alu -1 147 1 9 741 264 255 37 93 chr12 20488536 20488599 -100768931 + PB1D10 SINE Alu 52 116 -1 9 741 4117 242 54 54 chr12 20488665 20489826 -100767704 + MTD-int LTR MaLR 92 1252 -6 9 741 1703 198 85 3 chr12 20489839 20490204 -100767326 + MTD LTR MaLR 25 419 0 9 741 770 242 29 29 chr12 20490735 20490939 -100766591 - B3 SINE B2 -11 205 2 9 741 339 305 0 0 chr12 20491209 20491314 -100766216 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 9 741 793 121 207 146 chr12 20491360 20491440 -100766090 + URR1A DNA MER1_type 1 112 -114 9 741 1032 118 0 0 chr12 20491440 20491584 -100765946 + B1_Mm SINE Alu 1 144 -3 9 741 793 121 207 146 chr12 20491584 20491716 -100765814 + URR1A DNA MER1_type 113 226 0 9 741 366 286 11 21 chr12 20492174 20492267 -100765263 - PB1D10 SINE Alu -13 104 13 9 741 546 281 13 27 chr12 20492468 20492618 -100764912 - B1F SINE Alu 0 149 2 9 741 1353 196 161 6 chr12 20492645 20492968 -100764562 - ORR1D1 LTR MaLR -1 373 1 9 741 4653 63 5 2 chr12 20493285 20493870 -100763660 - LTRIS_Mus LTR ERV1 0 587 1 9 741 18733 69 2 27 chr12 20493870 20496314 -100761216 - MuRRS-int LTR ERV1 0 4690 2308 9 741 6830 92 18 15 chr12 20496309 20497402 -100760128 - MuRRS-int LTR ERV1 -3180 1510 143 9 741 1020 297 7 39 chr12 20498297 20498330 -100759200 + ORR1D2 LTR MaLR 1 26 -344 9 741 1215 139 81 9 chr12 20498330 20498541 -100758989 - URR1A DNA MER1_type 0 226 1 9 741 1020 297 7 39 chr12 20498541 20498787 -100758743 + ORR1D2 LTR MaLR 27 271 -99 9 741 3231 28 0 230 chr12 20498788 20499354 -100758176 + RLTR10C LTR ERVK 1 436 0 9 741 1517 50 0 0 chr12 20499354 20499534 -100757996 + MMERVK10C-int LTR ERVK 1 180 -7401 9 741 254 222 0 0 chr12 20499534 20499579 -100757951 + RLTR27 LTR ERVK 231 275 -34 9 741 406 22 0 0 chr12 20499579 20499625 -100757905 + MMERVK10C-int LTR ERVK 225 270 -7311 9 741 258 141 22 56 chr12 20499704 20499794 -100757736 + A-rich Low_complexity Low_complexity 3 89 0 9 741 376 67 0 0 chr12 20499794 20499839 -100757691 + RLTR10-int LTR ERVK 93 137 -6405 9 741 1389 25 0 0 chr12 20499842 20500000 -100757530 + RLTR10-int LTR ERVK 652 809 -1178 9 741 1880 49 0 4 chr12 20500002 20500274 -100757256 + MMERVK10C-int LTR ERVK 3512 3743 -3838 1 741 8949 36 0 0 chr12 20500267 20501288 -100756242 + MMERVK10C-int LTR ERVK 4790 5810 -1771 1 741 7281 56 3 64 chr12 20501279 20502270 -100755260 + MMERVK10C-int LTR ERVK 6651 7581 0 1 741 3745 35 7 0 chr12 20502270 20502703 -100754827 + RLTR10C LTR ERVK 1 436 0 1 741 294 244 85 0 chr12 20502703 20502785 -100754745 + ORR1E LTR MaLR 265 353 -6 2 741 1639 236 46 2 chr12 20503081 20503476 -100754054 + MTD LTR MaLR 5 416 -3 3 741 449 257 104 31 chr12 20504525 20504718 -100752812 - ID_B1 SINE B4 -15 209 3 4 741 410 222 147 91 chr12 20505382 20505580 -100751950 + B3 SINE B2 8 216 0 5 741 483 218 20 0 chr12 20505591 20505692 -100751838 + B1_Mur2 SINE Alu 7 109 -40 6 741 478 268 18 0 chr12 20505900 20506012 -100751518 + RSINE1 SINE B4 3 116 -49 7 741 1283 104 16 0 chr12 20506018 20506210 -100751320 + B2_Mm2 SINE B2 1 195 0 8 741 27 49 0 0 chr12 20506300 20506341 -100751189 + AT_rich Low_complexity Low_complexity 1 41 0 9 741 207 146 0 0 chr12 20506366 20506407 -100751123 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 1 741 327 242 15 0 chr12 20506897 20506963 -100750567 + ID2 SINE ID 2 68 -15 1 741 477 0 0 0 chr12 20507184 20507237 -100750293 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 741 302 294 223 60 chr12 20507399 20507717 -100749813 - ORR1E LTR MaLR 0 370 1 1 741 971 167 0 0 chr12 20507947 20508091 -100749439 - B1_Mur1 SINE Alu -3 146 3 1 741 338 227 13 39 chr12 20508178 20508256 -100749274 + RSINE1 SINE B4 50 125 -40 1 741 1321 116 16 0 chr12 20508347 20508536 -100748994 + B2_Mm2 SINE B2 1 192 -3 1 741 2315 137 16 45 chr12 20509166 20509593 -100747937 - MTC LTR MaLR -6 415 1 1 741 484 286 71 0 chr12 20509880 20510006 -100747524 - RSINE1 SINE B4 -10 155 21 1 741 419 68 0 0 chr12 20510379 20510438 -100747092 + RMER6D LTR ERVK 1 59 -661 1 741 349 200 0 0 chr12 20510698 20510758 -100746772 + B3 SINE B2 70 129 -87 2 741 567 272 0 13 chr12 20511199 20511348 -100746182 - B1_Mm SINE Alu 0 147 1 2 741 648 31 21 10 chr12 20511516 20511612 -100745918 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 2 741 1294 211 93 83 chr12 20511755 20512108 -100745422 + MTD LTR MaLR 16 376 -43 2 741 692 182 33 53 chr12 20512108 20512259 -100745271 - B1_Mus1 SINE Alu 0 148 1 2 741 1294 211 93 83 chr12 20512259 20512303 -100745227 + MTD LTR MaLR 377 417 -2 2 741 279 116 0 0 chr12 20512526 20512569 -100744961 + MTC LTR MaLR 92 134 -287 2 741 469 44 14 14 chr12 20513110 20513179 -100744351 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 741 547 268 91 54 chr12 20513208 20513449 -100744081 - B4A SINE B4 -38 254 5 2 741 494 263 85 0 chr12 20513581 20513699 -100743831 + ETnERV2-int LTR ERVK 7075 7202 -204 2 741 291 332 62 17 chr12 20514119 20514336 -100743194 + L2b LINE L2 3013 3242 -184 2 741 485 302 9 112 chr12 20514341 20514565 -100742965 + ID_B1 SINE B4 2 202 -22 3 741 245 194 153 0 chr12 20514797 20514869 -100742661 - MER5A1 DNA MER1_type -71 95 13 3 741 1038 113 6 0 chr12 20515364 20515523 -100742007 + B2_Mm1a SINE B2 1 160 -33 3 741 504 0 0 0 chr12 20515523 20515579 -100741951 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 3 741 620 248 216 40 chr12 20516084 20516529 -100741001 - L1_Mur3 LINE L1 -4044 1836 1314 3 741 388 254 50 45 chr12 20516824 20517026 -100740504 - L1_Mur3 LINE L1 -6622 1106 904 3 741 332 365 52 16 chr12 20519126 20519318 -100738212 + MTD LTR MaLR 15 213 -206 3 741 1646 176 101 6 chr12 20519318 20519609 -100737921 - RLTR9D LTR ERVK -2 401 85 3 741 2906 55 42 5 chr12 20519609 20519991 -100737539 + MTA_Mm LTR MaLR 1 396 0 3 741 1646 176 101 6 chr12 20519991 20520065 -100737465 - RLTR9D LTR ERVK -319 84 3 3 741 291 325 126 16 chr12 20520067 20520258 -100737272 + MTD LTR MaLR 192 403 -16 3 741 342 45 0 0 chr12 20520270 20520314 -100737216 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 741 390 354 52 78 chr12 20520359 20520627 -100736903 + ORR1B1-int LTR MaLR 54 337 -1243 3 741 931 109 0 33 chr12 20520695 20520847 -100736683 - B1_Mus2 SINE Alu 0 147 1 4 741 5997 228 18 11 chr12 20520854 20522263 -100735267 - Lx4B LINE L1 -4 7054 5637 4 741 1247 318 38 63 chr12 20522273 20522992 -100734538 + ORR1B1-int LTR MaLR 562 1262 -108 3 741 267 252 25 42 chr12 20523094 20523214 -100734316 - Lx4B LINE L1 -4 7054 6937 4 741 8159 192 99 30 chr12 20523633 20523782 -100733748 + MurSatRep1 Unknown Unknown 2 175 -1962 4 741 292 331 65 0 chr12 20523782 20523906 -100733624 - B1_Mur2 SINE Alu -17 132 1 4 741 8159 192 99 30 chr12 20523906 20524750 -100732780 + MurSatRep1 Unknown Unknown 176 1125 -1012 4 741 1347 88 6 0 chr12 20524750 20524931 -100732599 - B2_Mm1a SINE B2 -10 183 2 4 741 8159 192 99 30 chr12 20524931 20525931 -100731599 + MurSatRep1 Unknown Unknown 1126 2133 -4 4 741 452 292 71 70 chr12 20526069 20526129 -100731401 + MurSatRep1 Unknown Unknown 1691 1878 -259 4 741 458 257 22 22 chr12 20526129 20526268 -100731262 + MMSAT4 Satellite Satellite 30 168 0 4 741 452 292 71 70 chr12 20526268 20526297 -100731233 + MurSatRep1 Unknown Unknown 1879 1967 -170 4 741 414 272 22 22 chr12 20526297 20526436 -100731094 + MMSAT4 Satellite Satellite 30 168 0 4 741 452 292 71 70 chr12 20526436 20526486 -100731044 + MurSatRep1 Unknown Unknown 1968 2137 0 4 741 3008 82 0 5 chr12 20526486 20526892 -100730638 + L1_Mus1 LINE L1 6163 6566 -1 4 741 394 289 82 82 chr12 20526892 20527283 -100730247 + MurSatRep1 Unknown Unknown 1752 2137 0 4 741 239 278 27 27 chr12 20527232 20527343 -100730187 + MMSAT4 Satellite Satellite 35 145 -23 5 741 275 213 0 74 chr12 20527487 20527568 -100729962 + ORR1B1 LTR MaLR 302 376 -18 3 741 888 153 14 0 chr12 20527869 20528013 -100729517 + B1_Mus1 SINE Alu 2 147 -1 5 741 2289 241 72 7 chr12 20528229 20529233 -100728297 - L1_Mur3 LINE L1 -3798 2082 1062 5 741 249 33 0 0 chr12 20529847 20529877 -100727653 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 741 37 52 0 0 chr12 20529892 20529950 -100727580 + AT_rich Low_complexity Low_complexity 1 58 0 5 741 670 211 52 8 chr12 20529966 20530135 -100727395 - Lx2B LINE L1 -176 6800 6625 5 741 497 176 11 22 chr12 20530208 20530480 -100727050 + (TCTA)n Simple_repeat Simple_repeat 1 268 0 5 741 541 287 70 77 chr12 20530662 20530864 -100726666 + RLTR11A2 LTR ERVK 134 333 -194 5 741 1185 68 0 0 chr12 20530864 20531011 -100726519 + B1_Mm SINE Alu 1 147 0 5 741 541 287 70 77 chr12 20531011 20531106 -100726424 + RLTR11A2 LTR ERVK 334 429 -98 5 741 180 27 26 51 chr12 20531106 20531145 -100726385 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 741 205 167 27 14 chr12 20531202 20531275 -100726255 + T-rich Low_complexity Low_complexity 5 78 0 6 741 252 0 0 0 chr12 20531321 20531349 -100726181 + (TTA)n Simple_repeat Simple_repeat 2 29 0 6 741 454 168 22 14 chr12 20531575 20531714 -100725816 + (CA)n Simple_repeat Simple_repeat 1 140 0 6 741 392 195 30 12 chr12 20531765 20531931 -100725599 + (CA)n Simple_repeat Simple_repeat 1 169 0 6 741 2889 41 0 23 chr12 20532446 20532795 -100724735 - IAPLTR4 LTR ERVK -4 341 1 6 741 4517 205 9 14 chr12 20532795 20533674 -100723856 - IAPLTR3-int LTR ERVK -20 6801 5927 6 741 3484 86 0 4 chr12 20533657 20534113 -100723417 - MMERVK10C-int LTR ERVK -1367 6214 5761 6 741 3420 86 0 18 chr12 20534101 20534552 -100722978 - MMERVK10C-int LTR ERVK -1936 5645 5203 6 741 815 106 33 53 chr12 20534799 20534949 -100722581 - MMERVK10C-int LTR ERVK -2905 4676 4530 6 741 446 213 12 35 chr12 20534961 20535086 -100722444 - MMERVK10C-int LTR ERVK -2380 2464 2357 6 741 3263 151 154 2 chr12 20535091 20535703 -100721827 - ETnERV2-int LTR ERVK -3135 4271 3567 6 741 424 202 0 0 chr12 20535729 20535808 -100721722 - ETnERV2-int LTR ERVK -4653 2753 2675 6 741 212 267 147 0 chr12 20538030 20538105 -100719425 + PB1D10 SINE Alu 12 97 -20 6 741 821 167 7 20 chr12 20538111 20538258 -100719272 + B1_Mur4 SINE Alu 1 145 -5 6 741 870 202 28 42 chr12 20538287 20538504 -100719026 + ID_B1 SINE B4 3 216 -8 6 741 484 301 19 72 chr12 20539407 20539615 -100717915 + B4A SINE B4 24 220 -72 6 741 416 335 28 0 chr12 20539632 20539808 -100717722 + B3A SINE B2 2 182 -16 7 741 916 146 0 0 chr12 20539842 20539979 -100717551 + B1_Mur4 SINE Alu 1 137 -13 7 741 504 238 0 0 chr12 20540061 20540229 -100717301 + (TG)n Simple_repeat Simple_repeat 1 168 0 7 741 2328 96 0 58 chr12 20540251 20540594 -100716936 + ORR1A2 LTR MaLR 1 323 -4 7 741 474 96 0 0 chr12 20540605 20540678 -100716852 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 741 726 12 0 0 chr12 20540679 20540762 -100716768 + (GAGAA)n Simple_repeat Simple_repeat 1 83 0 7 741 461 276 37 31 chr12 20541449 20541610 -100715920 - RSINE1 SINE B4 -3 162 1 7 741 218 55 52 52 chr12 20541633 20541691 -100715839 + A-rich Low_complexity Low_complexity 2 59 0 7 741 1092 188 27 5 chr12 20542316 20542535 -100714995 - URR1B DNA MER1_type -1 224 1 7 741 189 196 0 0 chr12 20542748 20542804 -100714726 + GA-rich Low_complexity Low_complexity 1 56 0 7 741 1997 190 26 40 chr12 20544067 20544521 -100713009 - RLTR1D LTR ERV1 -1 604 157 8 741 477 0 0 0 chr12 20545668 20545721 -100711809 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 741 380 130 14 0 chr12 20546707 20546776 -100710754 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 8 741 6856 67 4 0 chr12 20547365 20548205 -100709325 + IAP-d-int LTR ERVK 5700 6542 0 8 741 2274 75 3 48 chr12 20548205 20548557 -100708973 + RLTR10D LTR ERVK 1 336 -23 8 741 267 130 0 0 chr12 20548789 20548843 -100708687 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 741 214 147 0 0 chr12 20548854 20548888 -100708642 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 741 556 198 48 32 chr12 20548899 20549024 -100708506 - B1_Mur3 SINE Alu -13 136 10 8 741 657 200 8 0 chr12 20549057 20549182 -100708348 - ID_B1 SINE B4 -7 217 92 8 741 1185 161 9 18 chr12 20550686 20550914 -100706616 + URR1A DNA MER1_type 1 226 0 8 741 181 289 124 56 chr12 20551573 20551734 -100705796 - MIRb SINE MIR 0 268 97 8 741 641 253 55 30 chr12 20551737 20551937 -100705593 + B4A SINE B4 2 206 -86 9 741 642 256 0 0 chr12 20552165 20552294 -100705236 + RSINE1 SINE B4 3 131 -34 9 741 234 264 0 40 chr12 20552949 20553024 -100704506 + G-rich Low_complexity Low_complexity 5 76 0 9 741 1903 120 19 10 chr12 20553239 20553550 -100703980 - MTC LTR MaLR 0 421 108 9 741 709 190 41 27 chr12 20553553 20553699 -100703831 + B1_Mur3 SINE Alu 2 149 0 9 741 207 161 0 0 chr12 20553708 20553739 -100703791 + polypurine Low_complexity Low_complexity 4 34 0 9 741 222 37 0 0 chr12 20553740 20553767 -100703763 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 741 492 48 0 0 chr12 20553767 20553829 -100703701 + (GA)n Simple_repeat Simple_repeat 2 64 0 9 741 497 237 18 0 chr12 20553829 20553943 -100703587 - MTC LTR MaLR -305 116 1 9 741 236 167 83 0 chr12 20555033 20555081 -100702449 + MTE2a LTR MaLR 1 52 -327 9 741 35 0 0 0 chr12 20555085 20555120 -100702410 + AT_rich Low_complexity Low_complexity 1 35 0 9 741 858 201 99 11 chr12 20555129 20555320 -100702210 - B3 SINE B2 -6 210 3 1 741 875 172 14 0 chr12 20555349 20555494 -100702036 - B1_Mus1 SINE Alu -1 147 1 1 741 604 280 107 71 chr12 20555499 20555525 -100702005 + MTE2a LTR MaLR 56 77 -342 9 741 1409 158 0 5 chr12 20555525 20555748 -100701782 + URR1B DNA MER1_type 1 222 -3 1 741 665 275 96 46 chr12 20555748 20556059 -100701471 + MTE2a LTR MaLR 58 405 -14 9 741 264 312 25 0 chr12 20556179 20556259 -100701271 + RSINE1 SINE B4 42 123 -42 1 741 411 21 0 0 chr12 20556293 20556341 -100701189 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 741 495 0 0 0 chr12 20556341 20556395 -100701135 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 741 182 388 12 0 chr12 20557577 20557657 -100699873 - L2c LINE L2 -9 3378 3298 1 741 2687 112 5 20 chr12 20557770 20558179 -100699351 - RLTR9E LTR ERVK -6 403 1 1 741 401 215 20 61 chr12 20558242 20558256 -100699274 - B3A SINE B2 -101 97 89 1 741 528 16 0 0 chr12 20558256 20558317 -100699213 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 741 546 131 0 0 chr12 20558317 20558401 -100699129 - B2_Mm2 SINE B2 -109 86 3 1 741 350 233 0 0 chr12 20558488 20558561 -100698969 + PB1D10 SINE Alu 45 117 0 1 741 437 235 12 0 chr12 20558566 20558647 -100698883 + RSINE1 SINE B4 53 134 -31 1 741 456 233 73 24 chr12 20558645 20558768 -100698762 + B1F1 SINE Alu 21 149 0 1 741 613 210 75 102 chr12 20558799 20558985 -100698545 + B3 SINE B2 15 195 0 1 741 331 345 84 46 chr12 20559972 20560233 -100697297 + L1MD2 LINE L1 6084 6354 -5 1 741 779 265 46 46 chr12 20560245 20560526 -100697004 + B4A SINE B4 2 282 -10 1 741 954 143 175 0 chr12 20560816 20561005 -100696525 - URR1B DNA MER1_type 0 225 4 1 741 195 320 39 26 chr12 20561578 20561655 -100695875 + MIRb SINE MIR 86 163 -105 1 741 235 315 93 16 chr12 20561673 20561802 -100695728 - RMER15 LTR ERVL -21 554 416 1 741 3577 27 119 16 chr12 20561968 20562415 -100695115 - MT2_Mm LTR ERVL 0 493 1 1 741 320 266 3 30 chr12 20562503 20562609 -100694921 - MT2A LTR ERVL -496 105 3 1 741 898 261 9 32 chr12 20563096 20563382 -100694148 - MTE2a LTR MaLR -12 367 34 1 741 872 168 153 0 chr12 20563382 20563572 -100693958 + URR1A DNA MER1_type 2 220 -6 1 741 234 260 201 57 chr12 20564055 20564214 -100693316 - ORR1A2 LTR MaLR -35 292 111 1 741 315 213 0 0 chr12 20564432 20564507 -100693023 + G-rich Low_complexity Low_complexity 2 76 0 1 741 606 187 89 0 chr12 20564847 20564970 -100692560 + B1_Mus1 SINE Alu 3 136 -12 1 741 671 81 0 10 chr12 20564970 20565070 -100692460 + (TAAA)n Simple_repeat Simple_repeat 2 100 0 1 741 291 320 79 32 chr12 20565126 20565252 -100692278 + MLT1F2 LTR MaLR 145 276 -284 1 741 690 244 89 0 chr12 20565543 20565711 -100691819 + B3 SINE B2 3 185 -31 1 741 564 276 47 16 chr12 20566042 20566171 -100691359 - ETnERV2-int LTR ERVK -204 7202 7070 1 741 505 178 148 33 chr12 20566228 20566350 -100691180 + B1_Mur2 SINE Alu 1 136 -13 1 741 800 91 6 38 chr12 20566359 20566519 -100691011 + (GGGAGA)n Simple_repeat Simple_repeat 3 157 0 1 741 222 37 0 0 chr12 20566679 20566706 -100690824 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 741 279 93 0 0 chr12 20566718 20566761 -100690769 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 741 225 315 75 43 chr12 20568103 20568196 -100689334 - RMER21A LTR ERV1 -593 354 259 1 741 758 264 13 44 chr12 20569032 20569258 -100688272 + ID_B1 SINE B4 3 221 -3 1 741 951 120 0 0 chr12 20569293 20569426 -100688104 + B1_Mus1 SINE Alu 1 133 -15 1 741 708 12 0 0 chr12 20569523 20569604 -100687926 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 741 503 328 184 0 chr12 20569619 20569875 -100687655 - L1MD2 LINE L1 -460 5899 5597 1 741 410 255 189 0 chr12 20569932 20570038 -100687492 - RSINE1 SINE B4 -36 129 4 1 741 4129 144 61 13 chr12 20570045 20570374 -100687156 + RMER17D2 LTR ERVK 1 345 -464 1 741 709 11 0 22 chr12 20570374 20570466 -100687064 + (TCTCC)n Simple_repeat Simple_repeat 2 91 0 1 741 4129 144 61 13 chr12 20570466 20570746 -100686784 + RMER17D2 LTR ERVK 346 641 -168 1 741 213 39 0 0 chr12 20570746 20570772 -100686758 + (CCA)n Simple_repeat Simple_repeat 2 27 0 1 741 4129 144 61 13 chr12 20570772 20570933 -100686597 + RMER17D2 LTR ERVK 642 808 -1 1 741 228 275 36 36 chr12 20571012 20571032 -100686498 + Tigger12A DNA MER2_type 460 537 -249 1 741 333 140 0 17 chr12 20571032 20571090 -100686440 - MT2A LTR ERVL -71 462 406 1 741 565 239 139 14 chr12 20571649 20571793 -100685737 + RSINE1 SINE B4 2 163 -2 1 741 483 249 207 56 chr12 20571932 20572069 -100685461 - RMER10A LTR ERVL 0 442 293 1 741 1125 123 0 0 chr12 20572069 20572248 -100685282 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 741 483 249 207 56 chr12 20572248 20572433 -100685097 - RMER10A LTR ERVL -150 292 72 1 741 221 292 95 26 chr12 20573292 20573408 -100684122 + MER5A DNA MER1_type 62 185 -4 1 741 967 278 19 4 chr12 20573994 20574252 -100683278 - MTEa LTR MaLR -122 257 1 1 741 281 250 103 0 chr12 20574387 20574455 -100683075 + ID_B1 SINE B4 51 125 -99 1 741 241 299 35 78 chr12 20574415 20574468 -100683062 + PB1D10 SINE Alu 5 51 -66 1 741 907 164 7 0 chr12 20574468 20574614 -100682916 - B1_Mus1 SINE Alu -1 147 1 1 741 241 299 35 78 chr12 20574614 20574632 -100682898 + PB1D10 SINE Alu 52 115 -2 1 741 243 182 0 0 chr12 20574632 20574676 -100682854 + ID_B1 SINE B4 181 224 0 1 741 231 229 71 0 chr12 20574663 20574733 -100682797 + BLACKJACK DNA AcHobo 920 994 -1950 1 741 322 314 39 55 chr12 20574754 20574882 -100682648 - MLT1C LTR MaLR -9 458 333 1 741 444 134 58 47 chr12 20574886 20574960 -100682570 + MTB LTR MaLR 2 76 -320 1 741 1152 162 96 32 chr12 20574960 20575276 -100682254 - RLTR13B1 LTR ERVK 0 893 562 1 741 1220 187 31 4 chr12 20575301 20575527 -100682003 - RLTR13B1 LTR ERVK -661 232 1 1 741 2241 112 9 6 chr12 20575527 20575852 -100681678 + MTB LTR MaLR 75 400 0 1 741 242 209 91 23 chr12 20575877 20575965 -100681565 - MLT1C LTR MaLR -137 253 160 1 741 595 258 119 15 chr12 20575990 20576191 -100681339 + B4A SINE B4 3 224 -68 1 741 276 222 0 0 chr12 20576313 20576367 -100681163 - MLT1C LTR MaLR -362 105 52 1 741 2188 103 33 3 chr12 20576367 20576669 -100680861 + RLTR10E LTR ERVK 1 311 0 1 741 796 136 6 6 chr12 20577011 20577174 -100680356 + (TTTC)n Simple_repeat Simple_repeat 4 166 0 1 741 546 43 0 0 chr12 20577181 20577250 -100680280 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 1 741 313 270 40 0 chr12 20577298 20577372 -100680158 - ID4_ SINE ID -6 77 1 1 741 811 216 0 13 chr12 20577385 20577535 -100679995 - B1_Mur1 SINE Alu 0 149 2 1 741 876 151 7 0 chr12 20577583 20577729 -100679801 + B1_Mus1 SINE Alu 1 147 -1 1 741 214 319 104 55 chr12 20577805 20577852 -100679678 - B3 SINE B2 0 216 10 1 741 661 269 40 7 chr12 20577852 20578002 -100679528 - RSINE1 SINE B4 0 165 11 1 741 431 244 60 22 chr12 20578163 20578297 -100679233 - MTD-int LTR MaLR -1117 141 3 1 742 805 221 188 5 chr12 20578305 20578643 -100678887 - MTD LTR MaLR 0 419 1 1 742 4005 225 56 89 chr12 20578701 20579477 -100678053 + MTD-int LTR MaLR 96 848 -410 1 742 1024 97 14 0 chr12 20579477 20579621 -100677909 + B1_Mm SINE Alu 2 147 0 1 742 4005 225 56 89 chr12 20579621 20580045 -100677485 + MTD-int LTR MaLR 849 1256 -2 1 742 1236 227 84 4 chr12 20580055 20580353 -100677177 + MTD LTR MaLR 25 322 -57 1 742 2779 117 42 36 chr12 20580618 20581095 -100676435 - RLTR45 LTR ERVK 0 482 3 1 742 7685 139 20 16 chr12 20581097 20582495 -100675035 - RLTR45-int LTR ERVK -456 7761 6331 1 742 3654 67 22 38 chr12 20582584 20583082 -100674448 - RLTR45-int LTR ERVK -5596 1648 1159 1 742 1291 104 58 28 chr12 20583201 20583535 -100673995 - RLTR45-int LTR ERVK -6067 1177 902 1 742 29 0 0 0 chr12 20583608 20583637 -100673893 + GC_rich Low_complexity Low_complexity 1 29 0 1 742 1876 65 0 0 chr12 20583662 20583892 -100673638 - RLTR45-int LTR ERVK -6334 910 681 1 742 1087 68 0 39 chr12 20584233 20584387 -100673143 - RLTR45-int LTR ERVK -6548 696 549 1 742 3735 121 26 30 chr12 20585157 20585730 -100671800 - RLTR45-int LTR ERVK -6673 571 1 1 742 2831 129 22 35 chr12 20585730 20586218 -100671312 - RLTR45 LTR ERVK 0 482 1 1 742 673 129 70 145 chr12 20586338 20586385 -100671145 + URR1A DNA MER1_type 68 101 -125 1 742 1103 76 7 14 chr12 20586385 20586531 -100670999 + B1_Mus2 SINE Alu 1 145 -2 1 742 673 129 70 145 chr12 20586531 20586655 -100670875 + URR1A DNA MER1_type 102 226 0 1 742 276 347 0 0 chr12 20587001 20587076 -100670454 - ID4_ SINE ID 0 83 9 1 742 366 224 9 140 chr12 20587086 20587200 -100670330 - PB1D10 SINE Alu 0 117 19 1 742 453 276 20 40 chr12 20587405 20587556 -100669974 - B1F SINE Alu 0 149 2 1 742 1343 203 165 6 chr12 20587583 20587905 -100669625 - ORR1D1 LTR MaLR -1 373 1 1 742 276 297 53 26 chr12 20588258 20588372 -100669158 - L2c LINE L2 -53 3334 3218 1 742 2007 157 67 24 chr12 20588921 20589293 -100668237 - MTC LTR MaLR -33 388 1 1 742 4356 25 0 0 chr12 20589370 20589852 -100667678 + LTRIS_Mm LTR ERV1 1 482 0 1 742 982 88 0 139 chr12 20590344 20590516 -100667014 - B1_Mus1 SINE Alu 0 148 1 1 742 682 169 209 90 chr12 20591333 20591534 -100665996 + URR1B DNA MER1_type 1 225 0 1 742 1143 197 9 0 chr12 20591572 20591785 -100665745 - B3 SINE B2 0 216 2 1 742 270 294 0 61 chr12 20592707 20592805 -100664725 + MLT1K LTR MaLR 504 595 0 1 742 3604 15 2 0 chr12 20592827 20593222 -100664308 + MTA_Mm LTR MaLR 1 396 0 1 742 9253 36 2 2 chr12 20593222 20594320 -100663210 + MTA_Mm-int LTR MaLR 1 1098 0 1 742 3604 15 2 0 chr12 20594320 20594715 -100662815 + MTA_Mm LTR MaLR 1 396 0 1 742 181 278 252 20 chr12 20595337 20595436 -100662094 + MIR3 SINE MIR 3 124 -84 1 742 1458 274 11 35 chr12 20596921 20596954 -100660576 + ORR1D2 LTR MaLR 1 30 -340 1 742 1133 145 91 10 chr12 20596954 20597163 -100660367 - URR1A DNA MER1_type 0 226 1 1 742 1458 274 11 35 chr12 20597163 20597504 -100660026 + ORR1D2 LTR MaLR 31 366 -4 1 742 256 353 35 0 chr12 20597677 20597793 -100659737 - RMER15 LTR ERVL -16 559 440 1 742 1811 232 45 2 chr12 20597793 20598191 -100659339 + MTD LTR MaLR 2 416 -3 1 742 184 281 120 40 chr12 20598710 20598810 -100658720 - L3 LINE CR1 -3343 1146 1039 1 742 584 278 29 29 chr12 20599231 20599405 -100658125 - ID_B1 SINE B4 0 224 51 1 742 420 229 122 157 chr12 20600090 20600287 -100657243 + B3A SINE B2 8 197 -1 1 742 591 196 10 10 chr12 20600294 20600397 -100657133 + B1_Mur2 SINE Alu 7 109 -40 1 742 507 282 17 0 chr12 20600604 20600721 -100656809 + RSINE1 SINE B4 3 121 -44 1 742 1328 89 16 0 chr12 20600722 20600912 -100656618 + B2_Mm2 SINE B2 1 193 -2 1 742 31 26 0 0 chr12 20601005 20601043 -100656487 + AT_rich Low_complexity Low_complexity 1 38 0 1 742 207 146 0 0 chr12 20601074 20601115 -100656415 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 1 742 335 250 13 13 chr12 20601605 20601682 -100655848 + ID2 SINE ID 2 78 -5 1 742 381 70 0 0 chr12 20601892 20601949 -100655581 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 742 207 306 124 45 chr12 20601990 20602079 -100655451 - L2b LINE L2 -52 3323 3228 2 742 403 289 217 53 chr12 20602087 20602405 -100655125 - ORR1E LTR MaLR 0 370 1 2 742 1021 150 0 0 chr12 20602640 20602787 -100654743 - B1_Mur1 SINE Alu 0 149 3 2 742 346 274 82 31 chr12 20602874 20602972 -100654558 + RSINE1 SINE B4 50 152 -13 2 742 1404 99 0 5 chr12 20603042 20603235 -100654295 + B2_Mm2 SINE B2 1 192 -3 2 742 2458 140 16 45 chr12 20603864 20604291 -100653239 - MTC LTR MaLR -6 415 1 2 742 519 280 80 0 chr12 20605326 20605451 -100652079 - RSINE1 SINE B4 -10 155 21 2 742 406 89 0 0 chr12 20605823 20605879 -100651651 + RMER6D LTR ERVK 1 56 -664 2 742 354 232 13 66 chr12 20606135 20606267 -100651263 + B3 SINE B2 73 193 0 2 742 234 128 26 0 chr12 20606353 20606392 -100651138 + MLT1C LTR MaLR 149 188 -279 2 742 596 259 0 13 chr12 20606631 20606780 -100650750 - B1_Mm SINE Alu 0 147 1 2 742 414 43 29 14 chr12 20606948 20607018 -100650512 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2 742 1397 213 107 27 chr12 20607160 20607497 -100650033 + MTD LTR MaLR 16 379 -40 2 742 749 186 7 54 chr12 20607516 20607664 -100649866 - B1_Mus1 SINE Alu 0 148 8 2 742 358 102 0 0 chr12 20607664 20607713 -100649817 + MTD LTR MaLR 373 421 0 2 742 306 93 0 0 chr12 20607929 20607972 -100649558 + MTC LTR MaLR 92 134 -287 2 742 526 51 13 13 chr12 20608510 20608589 -100648941 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 742 706 268 92 42 chr12 20608618 20608856 -100648674 - B4A SINE B4 -38 254 5 2 742 520 260 81 0 chr12 20608984 20609107 -100648423 + ETnERV2-int LTR ERVK 7070 7202 -204 2 742 312 295 140 39 chr12 20609516 20609745 -100647785 + L2b LINE L2 2991 3242 -184 2 742 624 237 50 128 chr12 20609750 20609968 -100647562 + ID_B1 SINE B4 2 202 -22 2 742 276 194 153 0 chr12 20610199 20610271 -100647259 - MER5A1 DNA MER1_type -71 95 13 2 742 787 98 203 0 chr12 20610766 20610899 -100646631 + B2_Mm1a SINE B2 1 160 -33 2 742 396 0 0 0 chr12 20610899 20610943 -100646587 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 742 530 167 37 0 chr12 20611185 20611293 -100646237 - Lx3B LINE L1 0 6973 6862 2 742 1123 63 14 0 chr12 20611834 20611977 -100645553 + B1_Mm SINE Alu 3 147 0 2 742 1160 84 4 0 chr12 20611979 20612218 -100645312 + (GAAA)n Simple_repeat Simple_repeat 1 240 0 2 742 1983 102 28 22 chr12 20612519 20612839 -100644691 - RLTRETN_Mm LTR ERVK 0 322 1 2 742 348 220 168 30 chr12 20613182 20613313 -100644217 - B1F1 SINE Alu 0 149 1 2 742 2168 68 29 3 chr12 20613729 20614040 -100643490 - IAPLTR2b LTR ERVK -8 319 1 2 742 471 302 33 11 chr12 20614040 20614223 -100643307 - MER63C DNA AcHobo -53 877 691 2 742 863 308 117 15 chr12 20614294 20614706 -100642824 - MER63C DNA AcHobo -237 693 240 2 742 719 193 21 7 chr12 20614972 20615113 -100642417 + B1_Mur1 SINE Alu 1 143 -6 2 742 640 211 68 28 chr12 20615257 20615451 -100642079 + B3 SINE B2 13 204 -12 2 742 288 277 0 0 chr12 20615468 20615533 -100641997 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 742 393 186 10 148 chr12 20615592 20615626 -100641904 + B3 SINE B2 66 99 -117 2 742 916 105 27 20 chr12 20615626 20615772 -100641758 + B1_Mus1 SINE Alu 2 148 0 2 742 393 186 10 148 chr12 20615772 20615838 -100641692 + B3 SINE B2 100 152 -64 2 742 536 223 9 0 chr12 20616729 20616841 -100640689 - PB1D9 SINE Alu -6 114 2 2 742 1133 82 0 20 chr12 20616891 20617040 -100640490 + B1_Mus2 SINE Alu 2 147 0 2 742 1476 215 100 8 chr12 20617456 20617836 -100639694 - MTD LTR MaLR 0 419 5 2 742 363 357 37 12 chr12 20618062 20618303 -100639227 - MER46C DNA MER2_type -1 337 91 2 742 781 190 0 14 chr12 20618320 20618464 -100639066 - B1_Mur3 SINE Alu -6 143 2 2 742 317 253 13 0 chr12 20618584 20618659 -100638871 + ID2 SINE ID 2 77 -6 2 742 845 165 4 0 chr12 20618722 20618985 -100638545 + (TG)n Simple_repeat Simple_repeat 1 264 0 2 742 1644 37 0 0 chr12 20619404 20619591 -100637939 - B2_Mm1a SINE B2 -5 188 2 2 742 1537 52 5 10 chr12 20623652 20623845 -100633685 - B2_Mm1a SINE B2 -1 192 1 2 742 189 74 0 0 chr12 20624398 20624425 -100633105 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 742 251 235 35 168 chr12 20624443 20624586 -100632944 - B4A SINE B4 -40 125 1 2 742 229 386 15 30 chr12 20625993 20626124 -100631406 - MER3 DNA MER1_type -78 131 3 2 742 264 326 31 0 chr12 20626189 20626287 -100631243 + MER5A1 DNA MER1_type 66 166 0 2 742 204 262 11 56 chr12 20626361 20626450 -100631080 - MER5B DNA MER1_type -62 116 32 2 742 381 281 94 20 chr12 20626851 20627030 -100630500 - B3A SINE B2 -4 191 3 2 742 194 0 39 0 chr12 20627308 20627334 -100630196 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 742 975 116 0 0 chr12 20627361 20627499 -100630031 - B1_Mm SINE Alu -9 138 1 2 742 869 182 173 0 chr12 20627551 20627776 -100629754 + Lx9 LINE L1 7381 7644 0 2 742 685 256 71 24 chr12 20628104 20628316 -100629214 - ID_B1 SINE B4 -2 222 1 2 742 332 178 14 0 chr12 20628826 20628899 -100628631 + GA-rich Low_complexity Low_complexity 3 76 0 2 742 234 262 121 16 chr12 20628918 20629042 -100628488 + Lx8 LINE L1 7335 7471 -2 2 742 276 184 66 44 chr12 20629090 20629181 -100628349 + (CCCTAA)n Simple_repeat Simple_repeat 2 94 0 2 742 325 296 55 89 chr12 20629220 20629457 -100628073 + MT2A LTR ERVL 74 302 -231 2 742 4920 114 18 88 chr12 20630038 20630992 -100626538 - RMER17D LTR ERVK -2 887 1 2 742 604 254 209 43 chr12 20631553 20631997 -100625533 - L1_Mur3 LINE L1 -4044 1836 1319 2 742 200 221 40 40 chr12 20632130 20632229 -100625301 + (TCTCTG)n Simple_repeat Simple_repeat 4 102 0 2 742 447 261 19 34 chr12 20632298 20632504 -100625026 - L1_Mur3 LINE L1 -6622 1106 904 2 742 292 342 60 107 chr12 20633659 20633875 -100623655 + ORR1D-int LTR MaLR 132 337 -1243 2 742 960 103 0 27 chr12 20633959 20634108 -100623422 - B1_Mus2 SINE Alu 0 147 3 2 742 4224 231 20 9 chr12 20634118 20635109 -100622421 - Lx4B LINE L1 -4 7054 6053 2 742 3385 15 49 0 chr12 20635119 20635508 -100622022 - L1Md_T LINE L1 0 6582 6175 2 742 8932 27 0 0 chr12 20635508 20636552 -100620978 + L1_Mm LINE L1 3389 4432 -1451 2 742 1931 223 9 20 chr12 20636551 20636990 -100620540 - Lx4B LINE L1 -988 6070 5637 2 742 1307 322 33 61 chr12 20637000 20637721 -100619809 + ORR1D-int LTR MaLR 562 1262 -108 2 742 230 274 18 45 chr12 20637821 20637932 -100619598 - Lx4B LINE L1 -4 7054 6947 2 742 732 191 14 0 chr12 20638363 20638510 -100619020 + MurSatRep1 Unknown Unknown 2 150 -1987 2 742 319 323 65 0 chr12 20638512 20638636 -100618894 - B1_Mur2 SINE Alu -17 132 1 2 742 4071 169 27 27 chr12 20638639 20639448 -100618082 + MurSatRep1 Unknown Unknown 287 1095 -1042 2 742 23 54 0 0 chr12 20639467 20639504 -100618026 + AT_rich Low_complexity Low_complexity 1 37 0 2 742 1399 75 27 5 chr12 20639504 20639692 -100617838 + B2_Mm1a SINE B2 1 192 -1 2 742 1360 79 6 0 chr12 20639802 20639979 -100617551 - B2_Mm1a SINE B2 -14 179 2 2 742 4269 204 39 26 chr12 20639979 20640982 -100616548 + MurSatRep1 Unknown Unknown 1120 2135 -2 2 742 453 298 63 45 chr12 20641023 20641403 -100616127 + MurSatRep1 Unknown Unknown 1750 2136 -1 2 742 529 270 10 10 chr12 20641179 20641486 -100616044 + MMSAT4 Satellite Satellite 1 307 0 2 742 531 302 51 70 chr12 20641475 20641515 -100616015 + MurSatRep1 Unknown Unknown 1691 1718 -419 2 742 509 281 0 0 chr12 20641515 20641654 -100615876 + MMSAT4 Satellite Satellite 30 168 0 2 742 531 302 51 70 chr12 20641654 20642125 -100615405 + MurSatRep1 Unknown Unknown 1719 2049 -88 2 742 3161 74 0 2 chr12 20642125 20642531 -100614999 + L1_Mus1 LINE L1 6163 6567 0 2 742 308 302 67 81 chr12 20642531 20642553 -100614977 + MurSatRep1 Unknown Unknown 1832 1865 -272 2 742 383 302 0 0 chr12 20642553 20642679 -100614851 + MMSAT4 Satellite Satellite 43 168 0 2 742 308 302 67 81 chr12 20642679 20642846 -100614684 + MurSatRep1 Unknown Unknown 1866 2136 -1 2 742 298 256 0 0 chr12 20643057 20643135 -100614395 + ORR1C2 LTR MaLR 293 370 -14 2 742 860 145 14 7 chr12 20643432 20643578 -100613952 + B1_Mus1 SINE Alu 2 148 0 2 742 1598 245 53 109 chr12 20643777 20644153 -100613377 - L1_Mur2 LINE L1 -3753 2127 1818 2 742 187 29 0 79 chr12 20644160 20644198 -100613332 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 742 1078 71 0 34 chr12 20644198 20644336 -100613194 - B1_Mm SINE Alu -10 137 2 2 742 1598 245 53 109 chr12 20644336 20644405 -100613125 - L1_Mur2 LINE L1 -4063 1817 1774 2 742 4358 18 0 0 chr12 20644405 20644894 -100612636 - L1Md_A LINE L1 0 6582 6094 2 742 1598 247 58 92 chr12 20644894 20645525 -100612005 - L1_Mur2 LINE L1 -4107 1773 1087 2 742 459 224 53 35 chr12 20645510 20645681 -100611849 - L1_Mur2 LINE L1 -6507 1221 1048 2 742 328 143 0 0 chr12 20646245 20646294 -100611236 - HAL1-3A_ME LINE L1 -835 2023 1975 2 742 450 211 0 0 chr12 20646296 20646410 -100611120 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 742 22 35 0 0 chr12 20646420 20646449 -100611081 + AT_rich Low_complexity Low_complexity 1 29 0 2 742 537 228 80 9 chr12 20646460 20646629 -100610901 - Lx2B LINE L1 -171 6805 6626 2 742 367 218 20 0 chr12 20646672 20646773 -100610757 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 2 742 417 188 19 0 chr12 20646773 20646927 -100610603 + (TA)n Simple_repeat Simple_repeat 2 158 0 2 742 213 229 0 0 chr12 20646933 20646981 -100610549 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2 742 219 139 0 0 chr12 20647014 20647050 -100610480 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 742 27 29 0 0 chr12 20647063 20647097 -100610433 + AT_rich Low_complexity Low_complexity 1 34 0 2 742 616 225 51 16 chr12 20647097 20647286 -100610244 - Lx2B LINE L1 -162 6814 6625 2 742 320 230 30 0 chr12 20647328 20647428 -100610102 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 2 742 485 194 6 0 chr12 20647439 20647604 -100609926 + (TA)n Simple_repeat Simple_repeat 1 166 0 2 742 561 289 46 95 chr12 20647806 20648016 -100609514 + RLTR11A2 LTR ERVK 134 333 -194 2 742 1182 55 0 7 chr12 20648016 20648164 -100609366 + B1_Mm SINE Alu 1 147 0 2 742 561 289 46 95 chr12 20648164 20648278 -100609252 + RLTR11A2 LTR ERVK 334 442 -85 2 742 375 249 29 23 chr12 20648278 20648451 -100609079 + T-rich Low_complexity Low_complexity 4 177 0 2 742 419 176 24 8 chr12 20648700 20648826 -100608704 + (CA)n Simple_repeat Simple_repeat 1 128 0 3 742 331 196 36 12 chr12 20648879 20649044 -100608486 + (CA)n Simple_repeat Simple_repeat 1 169 0 3 742 2637 52 3 29 chr12 20649325 20649665 -100607865 - IAPEz-int LTR ERVK -498 5983 5653 3 742 2717 62 9 3 chr12 20649660 20650000 -100607530 - IAPEz-int LTR ERVK -4781 1700 1359 3 742 3596 89 19 18 chr12 20650000 20650826 -100606704 - IAPEz-int LTR ERVK -5819 662 9 3 742 3279 55 11 130 chr12 20650827 20651366 -100606164 - IAPLTR2_Mm LTR ERVK 0 475 1 3 742 243 257 56 28 chr12 20653934 20654006 -100603524 + PB1D10 SINE Alu 30 103 -14 3 742 819 200 0 0 chr12 20654008 20654158 -100603372 + B1_Mur4 SINE Alu 1 150 0 3 742 845 203 32 42 chr12 20654192 20654408 -100603122 + ID_B1 SINE B4 3 216 -8 3 742 586 297 10 67 chr12 20655310 20655519 -100602011 + B4A SINE B4 24 220 -72 3 742 374 312 35 0 chr12 20655536 20655680 -100601850 + B3A SINE B2 2 150 -48 3 742 249 57 0 0 chr12 20655685 20655720 -100601810 + (CATA)n Simple_repeat Simple_repeat 1 35 0 3 742 944 139 0 0 chr12 20655761 20655898 -100601632 + B1_Mur4 SINE Alu 1 137 -13 3 742 228 284 15 0 chr12 20655984 20656051 -100601479 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 742 2235 96 0 69 chr12 20656051 20656398 -100601132 + ORR1A2 LTR MaLR 1 323 -4 3 742 303 104 0 0 chr12 20656434 20656482 -100601048 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 742 537 250 37 31 chr12 20657172 20657333 -100600197 - RSINE1 SINE B4 -3 162 1 3 742 192 143 0 0 chr12 20657349 20657391 -100600139 + (A)n Simple_repeat Simple_repeat 1 42 0 3 742 1148 174 27 5 chr12 20658018 20658237 -100599293 - URR1B DNA MER1_type -1 224 1 3 742 297 162 0 0 chr12 20658450 20658518 -100599012 + GA-rich Low_complexity Low_complexity 2 69 0 3 742 414 0 0 0 chr12 20660848 20660894 -100596636 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 742 3355 199 29 44 chr12 20661405 20662263 -100595267 + RLTR13A LTR ERVK 11 855 0 3 742 626 109 10 0 chr12 20662753 20662854 -100594676 + (TTCC)n Simple_repeat Simple_repeat 2 103 0 3 742 438 212 0 1 chr12 20663548 20663654 -100593876 - B1_Mur4 SINE Alu -8 112 9 3 742 553 216 138 51 chr12 20663832 20664027 -100593503 + B3 SINE B2 5 216 0 3 742 778 113 0 0 chr12 20664104 20664228 -100593302 + B1_Mm SINE Alu 24 147 0 3 742 292 269 78 9 chr12 20664236 20664352 -100593178 + ID_B1 SINE B4 74 197 -27 3 742 2535 109 0 45 chr12 20664352 20664728 -100592802 + RLTR10D LTR ERVK 1 359 0 3 742 8568 64 2 3 chr12 20664728 20665785 -100591745 + IAP-d-int LTR ERVK 1 1056 -5486 3 742 13011 61 1 0 chr12 20665784 20667354 -100590176 + IAP-d-int LTR ERVK 4971 6542 0 3 742 2385 92 0 48 chr12 20667354 20667707 -100589823 + RLTR10D LTR ERVK 1 336 -23 3 742 234 81 0 0 chr12 20667941 20667978 -100589552 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 742 285 145 0 0 chr12 20667986 20668048 -100589482 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 742 655 171 47 31 chr12 20668053 20668180 -100589350 - B1_Mur3 SINE Alu -12 137 9 3 742 658 219 8 0 chr12 20668218 20668337 -100589193 - ID_B1 SINE B4 -13 211 92 3 742 1248 41 0 0 chr12 20668533 20668680 -100588850 + B1_Mus2 SINE Alu 1 147 0 3 742 1132 180 18 18 chr12 20670006 20670232 -100587298 + URR1A DNA MER1_type 1 226 0 3 742 213 289 150 26 chr12 20670890 20671043 -100586487 - MIR SINE MIR -1 261 90 3 742 694 267 50 25 chr12 20671046 20671246 -100586284 + B4A SINE B4 2 206 -86 3 742 674 246 0 0 chr12 20671473 20671599 -100585931 + RSINE1 SINE B4 3 128 -37 3 742 242 295 69 111 chr12 20671597 20671814 -100585716 - MER2B DNA MER2_type -130 215 8 3 742 233 278 0 43 chr12 20672257 20672351 -100585179 + G-rich Low_complexity Low_complexity 5 94 0 3 742 225 297 79 26 chr12 20672449 20672563 -100584967 + MIRb SINE MIR 23 142 -126 3 742 2023 138 10 12 chr12 20672566 20672883 -100584647 - MTC LTR MaLR 0 421 109 3 742 530 227 55 0 chr12 20672883 20672993 -100584537 + B1_Mur3 SINE Alu 2 117 -32 3 742 287 299 92 30 chr12 20672885 20673016 -100584514 + ID_B1 SINE B4 85 223 -1 3 742 261 0 0 0 chr12 20673043 20673072 -100584458 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 742 300 27 0 0 chr12 20673072 20673108 -100584422 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 742 533 250 18 0 chr12 20673108 20673220 -100584310 - MTC LTR MaLR -307 114 1 3 742 251 167 83 0 chr12 20674308 20674356 -100583174 + MTE2a LTR MaLR 1 52 -327 3 742 26 30 0 0 chr12 20674360 20674393 -100583137 + AT_rich Low_complexity Low_complexity 1 33 0 3 742 711 225 111 11 chr12 20674402 20674591 -100582939 - B3 SINE B2 -6 210 3 3 742 890 166 14 0 chr12 20674630 20674775 -100582755 - B1_Mus1 SINE Alu -1 147 1 3 742 1328 176 0 5 chr12 20674806 20675029 -100582501 + URR1B DNA MER1_type 1 222 -3 3 742 785 268 117 42 chr12 20675032 20675340 -100582190 + MTE2a LTR MaLR 35 365 -14 3 742 414 0 0 0 chr12 20675497 20675543 -100581987 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 742 603 0 0 0 chr12 20675543 20675609 -100581921 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 742 1135 137 11 0 chr12 20676984 20677167 -100580363 - RLTR9E LTR ERVK -6 403 219 3 742 2216 78 3 3 chr12 20677168 20677465 -100580065 - RLTR9E LTR ERVK -112 297 1 3 742 544 105 0 0 chr12 20677465 20677541 -100579989 - ETnERV2-int LTR ERVK 0 7406 7331 3 742 17009 188 41 32 chr12 20677750 20681674 -100575856 - ETnERV2-int LTR ERVK -977 6429 1704 3 742 7996 214 32 27 chr12 20681651 20683463 -100574067 - ETnERV2-int LTR ERVK -3858 3386 2 3 742 1447 119 24 3 chr12 20683470 20683813 -100573717 - RLTR9E LTR ERVK -5 404 1 3 742 431 204 20 61 chr12 20683875 20683889 -100573641 - B3A SINE B2 -101 97 89 3 742 639 0 0 0 chr12 20683889 20683960 -100573570 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 742 576 119 0 0 chr12 20683960 20684044 -100573486 - B2_Mm2 SINE B2 -109 86 3 3 742 333 260 0 0 chr12 20684131 20684204 -100573326 + PB1D10 SINE Alu 45 117 0 3 742 376 286 11 0 chr12 20684198 20684289 -100573241 + RSINE1 SINE B4 42 133 -32 3 742 468 250 73 24 chr12 20684288 20684411 -100573119 + B1F1 SINE Alu 21 149 0 3 742 595 240 27 38 chr12 20684445 20684628 -100572902 + B3 SINE B2 18 195 0 3 742 765 242 35 30 chr12 20685139 20685355 -100572175 - B3A SINE B2 -6 210 3 3 742 223 304 93 52 chr12 20685358 20685552 -100571978 + L2c LINE L2 2963 3164 -223 3 742 304 321 28 0 chr12 20685738 20685847 -100571683 + PB1D7 SINE Alu 3 114 -6 3 742 298 333 8 41 chr12 20685854 20685976 -100571554 - MIRb SINE MIR -149 119 2 3 742 263 331 82 27 chr12 20686955 20687101 -100570429 - RMER15 LTR ERVL -6 569 416 3 742 280 250 0 29 chr12 20687379 20687449 -100570081 - MT2A LTR ERVL -457 76 9 3 742 859 259 12 29 chr12 20687955 20688239 -100569291 - MTE2a LTR MaLR -11 368 35 3 742 819 164 201 5 chr12 20688239 20688423 -100569107 + URR1A DNA MER1_type 1 220 -6 3 742 735 89 27 27 chr12 20689282 20689432 -100568098 + (GGGGA)n Simple_repeat Simple_repeat 2 151 0 3 742 676 188 39 0 chr12 20689773 20689901 -100567629 + B1_Mus1 SINE Alu 4 136 -12 3 742 591 53 0 0 chr12 20689901 20689976 -100567554 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 3 742 265 260 35 146 chr12 20690089 20690233 -100567297 + MLT1F2 LTR MaLR 207 334 -226 3 742 714 240 88 0 chr12 20690456 20690648 -100566882 + B3 SINE B2 3 211 -5 3 742 313 274 157 33 chr12 20690673 20690794 -100566736 + B1_Mur2 SINE Alu 1 136 -13 3 742 213 39 0 0 chr12 20690802 20690828 -100566702 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 742 615 84 0 0 chr12 20691020 20691115 -100566415 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 3 742 345 24 0 0 chr12 20691117 20691159 -100566371 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 742 1219 54 0 0 chr12 20692218 20692365 -100565165 - B1_Mm SINE Alu 0 147 1 3 742 739 278 9 62 chr12 20693598 20693809 -100563721 + ID_B1 SINE B4 11 210 -14 3 742 243 0 0 0 chr12 20693813 20693840 -100563690 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 742 1075 87 0 0 chr12 20693863 20694001 -100563529 + B1_Mus1 SINE Alu 1 138 -10 3 742 468 0 0 0 chr12 20694077 20694129 -100563401 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 742 478 67 27 0 chr12 20694129 20694203 -100563327 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 742 446 363 37 0 chr12 20694256 20694471 -100563059 - L1MD LINE L1 -423 5819 5597 3 742 36233 39 1 8 chr12 20694500 20699505 -100558025 + L1Md_F2 LINE L1 622 5586 -297 3 742 8010 54 1 2 chr12 20699505 20700488 -100557042 + L1Md_F2 LINE L1 5587 6568 -14 3 742 339 310 177 0 chr12 20700533 20700646 -100556884 - RSINE1 SINE B4 -29 136 4 3 742 809 110 34 0 chr12 20700653 20700771 -100556759 + RMER17D2 LTR ERVK 1 122 -687 3 742 857 98 8 8 chr12 20700774 20700907 -100556623 + RMER17D2 LTR ERVK 673 805 -4 3 742 3484 75 54 62 chr12 20700908 20701423 -100556107 + RLTR1B LTR ERV1 2 512 0 3 742 238 292 25 128 chr12 20701488 20701611 -100555919 - RMER21A LTR ERV1 -273 674 471 3 742 1428 170 182 138 chr12 20701523 20701976 -100555554 - MT2A LTR ERVL -71 462 1 3 742 484 280 14 0 chr12 20701977 20702120 -100555410 - L1MD LINE L1 -676 5566 5422 3 742 788 208 16 43 chr12 20702137 20702323 -100555207 + B3A SINE B2 1 181 -17 3 742 486 202 125 0 chr12 20702328 20702432 -100555098 - B3 SINE B2 -98 118 2 3 742 835 155 0 114 chr12 20702525 20702692 -100554838 - B1_Mus1 SINE Alu 0 148 1 3 742 1713 228 37 44 chr12 20703058 20703274 -100554256 - MTD LTR MaLR -14 405 190 3 742 791 251 43 10 chr12 20703274 20703483 -100554047 - B3 SINE B2 0 216 1 3 742 1713 228 37 44 chr12 20703483 20703674 -100553856 - MTD LTR MaLR -230 189 2 3 742 5927 81 25 6 chr12 20703793 20704586 -100552944 - RLTR13C2 LTR ERVK 0 808 1 3 742 5762 42 65 0 chr12 20704752 20705449 -100552081 + RLTR4_Mm LTR ERV1 1 742 0 3 742 21482 11 8 6 chr12 20705449 20707827 -100549703 + RLTR4_MM-int LTR ERV1 1 2385 -5216 3 92 16223 16 5 1 chr12 20707816 20709622 -100547908 + RLTR4_MM-int LTR ERV1 3218 5031 -2570 3 743 1810 39 0 0 chr12 20709608 20709816 -100547714 + RLTR4_MM-int LTR ERV1 7394 7601 0 3 743 5762 42 65 0 chr12 20709816 20710513 -100547017 + RLTR4_Mm LTR ERV1 1 742 0 3 743 452 290 115 20 chr12 20710872 20711020 -100546510 + RSINE1 SINE B4 2 163 -2 3 743 377 246 103 46 chr12 20711172 20711347 -100546183 - RMER10A LTR ERVL 0 442 258 3 743 221 83 0 27 chr12 20711347 20711384 -100546146 + (GGAGA)n Simple_repeat Simple_repeat 1 36 0 3 743 417 249 91 78 chr12 20711389 20711620 -100545910 - RMER10A LTR ERVL -144 298 65 3 743 255 343 35 21 chr12 20712205 20712348 -100545182 + MLT1N2 LTR MaLR 413 557 -5 3 743 905 140 0 0 chr12 20712511 20712647 -100544883 - B1_Mus1 SINE Alu -12 136 1 3 743 235 204 0 0 chr12 20712665 20712709 -100544821 + ID_B1 SINE B4 181 224 0 4 743 26 0 0 0 chr12 20712802 20712828 -100544702 + AT_rich Low_complexity Low_complexity 1 26 0 4 743 2308 23 0 0 chr12 20712833 20713096 -100544434 + L1Md_A LINE L1 6320 6582 0 4 743 284 266 52 173 chr12 20713441 20713499 -100544031 - MLT1B LTR MaLR -79 311 254 4 743 2681 81 50 5 chr12 20713499 20713882 -100543648 + MTB LTR MaLR 1 400 0 4 743 284 266 52 173 chr12 20713882 20713996 -100543534 - MLT1B LTR MaLR -137 253 160 4 743 582 264 133 14 chr12 20714020 20714231 -100543299 + B4A SINE B4 3 238 -54 4 743 1363 56 6 0 chr12 20714246 20714426 -100543104 - L1_Mm LINE L1 -427 5456 5276 4 743 1881 42 0 0 chr12 20714426 20714641 -100542889 + L1Md_F2 LINE L1 5991 6205 -377 4 743 1961 181 134 81 chr12 20714642 20715201 -100542329 - RLTR6_Mm LTR ERV1 -65 589 1 4 743 65616 34 23 0 chr12 20715201 20722807 -100534723 - RLTR6-int LTR ERV1 0 7778 1 4 743 1748 132 270 47 chr12 20722822 20723274 -100534256 - RLTR6_Mm LTR ERV1 -65 589 37 4 743 239 218 200 38 chr12 20723276 20723381 -100534149 - RLTR6_Mm LTR ERV1 -532 122 1 4 743 2648 86 8 11 chr12 20723381 20723757 -100533773 + L1Md_F2 LINE L1 6208 6582 0 4 743 204 40 0 0 chr12 20724259 20724284 -100533246 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 4 743 1180 89 6 11 chr12 20724291 20724472 -100533058 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 743 624 38 0 0 chr12 20724487 20724566 -100532964 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 743 696 277 34 5 chr12 20724568 20724775 -100532755 - ID_B1 SINE B4 -11 213 1 4 743 714 218 7 13 chr12 20724788 20724937 -100532593 - B1_Mur1 SINE Alu 0 149 2 4 743 595 171 62 0 chr12 20724998 20725127 -100532403 + B1_Mus1 SINE Alu 11 147 -1 4 743 585 276 45 6 chr12 20725247 20725404 -100532126 - RSINE1 SINE B4 0 165 3 4 743 411 209 42 108 chr12 20725550 20725615 -100531915 - MTD-int LTR MaLR -1102 156 108 4 743 887 73 8 0 chr12 20725615 20725739 -100531791 + (TTTTC)n Simple_repeat Simple_repeat 2 126 0 4 743 1161 22 0 0 chr12 20725739 20725873 -100531657 - B1_Mm SINE Alu -12 135 2 4 743 411 209 42 108 chr12 20725873 20725972 -100531558 - MTD-int LTR MaLR -1151 107 3 4 743 1001 226 224 9 chr12 20725979 20726322 -100531208 - MTD LTR MaLR 0 419 3 4 743 3842 238 45 55 chr12 20726380 20727549 -100529981 + MTD-int LTR MaLR 96 1252 -6 4 743 1510 208 82 0 chr12 20727562 20727927 -100529603 + MTD LTR MaLR 25 419 0 4 743 861 229 15 15 chr12 20728462 20728666 -100528864 - B3 SINE B2 -11 205 2 4 743 358 316 0 0 chr12 20728938 20729055 -100528475 + (TGGA)n Simple_repeat Simple_repeat 3 119 0 4 743 659 147 6 159 chr12 20729134 20729181 -100528349 + URR1A DNA MER1_type 68 112 -114 4 743 1091 83 7 0 chr12 20729181 20729326 -100528204 + B1_Mm SINE Alu 1 146 -1 4 743 659 147 6 159 chr12 20729326 20729448 -100528082 + URR1A DNA MER1_type 113 211 -15 4 743 292 312 13 0 chr12 20729801 20729878 -100527652 - ID4_ SINE ID 0 83 6 4 743 364 283 0 11 chr12 20729912 20730005 -100527525 - PB1D10 SINE Alu -13 104 13 4 743 558 264 0 45 chr12 20730205 20730360 -100527170 - B1F SINE Alu 0 149 2 4 743 1207 224 161 6 chr12 20730387 20730710 -100526820 - ORR1D1 LTR MaLR -1 373 1 4 743 423 0 0 0 chr12 20730944 20730991 -100526539 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 4 743 1150 94 0 0 chr12 20730991 20731151 -100526379 - B2_Mm1t SINE B2 -33 160 1 4 743 241 212 76 0 chr12 20731297 20731363 -100526167 - L2c LINE L2 -53 3334 3264 4 743 846 161 0 24 chr12 20731961 20732121 -100525409 - MTC LTR MaLR -33 388 233 4 743 1079 95 6 0 chr12 20732121 20732279 -100525251 + B2_Mm1a SINE B2 2 160 -33 4 743 315 0 0 0 chr12 20732279 20732314 -100525216 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 743 947 199 89 46 chr12 20732323 20732560 -100524970 - MTC LTR MaLR -174 247 1 4 743 213 108 0 0 chr12 20732638 20732675 -100524855 + (TGG)n Simple_repeat Simple_repeat 1 37 0 4 743 1181 68 0 0 chr12 20733128 20733274 -100524256 - B1_Mus1 SINE Alu -2 146 1 4 743 671 149 206 91 chr12 20734088 20734287 -100523243 + URR1B DNA MER1_type 4 225 0 4 743 1035 216 9 0 chr12 20734326 20734539 -100522991 - B3 SINE B2 0 216 2 4 743 1232 48 0 0 chr12 20737566 20737712 -100519818 - B1_Mus2 SINE Alu 0 147 2 4 743 1303 259 38 36 chr12 20737966 20737999 -100519531 + ORR1D2 LTR MaLR 1 30 -340 4 743 1220 139 76 9 chr12 20737999 20738210 -100519320 - URR1B DNA MER1_type 0 225 1 4 743 1303 259 38 36 chr12 20738210 20738541 -100518989 + ORR1D2 LTR MaLR 31 366 -4 4 743 1569 246 42 5 chr12 20738830 20739230 -100518300 + MTD LTR MaLR 2 416 -3 4 743 616 245 85 33 chr12 20740274 20740485 -100517045 - ID_B1 SINE B4 0 224 3 4 743 348 283 171 14 chr12 20741148 20741288 -100516242 + B3A SINE B2 8 169 -29 4 743 258 95 0 0 chr12 20741303 20741345 -100516185 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 743 540 190 10 10 chr12 20741374 20741475 -100516055 + B1_Mur2 SINE Alu 8 108 -41 4 743 505 256 17 0 chr12 20741683 20741800 -100515730 + RSINE1 SINE B4 3 121 -44 4 743 1263 106 16 0 chr12 20741801 20741990 -100515540 + B2_Mm2 SINE B2 1 192 -3 4 743 23 68 0 0 chr12 20742084 20742128 -100515402 + AT_rich Low_complexity Low_complexity 1 44 0 4 743 189 121 0 0 chr12 20742161 20742194 -100515336 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 4 743 337 237 13 13 chr12 20742684 20742761 -100514769 + ID2 SINE ID 2 78 -5 4 743 318 26 0 0 chr12 20742970 20743009 -100514521 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 743 186 302 122 44 chr12 20743049 20743139 -100514391 - L2b LINE L2 -51 3324 3228 4 743 260 291 204 68 chr12 20743149 20743465 -100514065 - ORR1E LTR MaLR 0 359 1 4 743 1040 143 0 0 chr12 20743700 20743847 -100513683 - B1_Mur1 SINE Alu 0 149 3 4 743 331 219 13 40 chr12 20743904 20743980 -100513550 + RSINE1 SINE B4 50 123 -42 4 743 1288 126 0 5 chr12 20744080 20744272 -100513258 + B2_Mm2 SINE B2 1 191 -4 4 743 2081 147 42 34 chr12 20744901 20745309 -100512221 - MTC LTR MaLR -6 415 5 4 743 505 290 69 0 chr12 20746325 20746456 -100511074 - RSINE1 SINE B4 -4 161 22 4 743 405 86 0 0 chr12 20746830 20746888 -100510642 + RMER6D LTR ERVK 1 58 -662 4 743 272 220 17 0 chr12 20747140 20747199 -100510331 + B3 SINE B2 70 129 -87 4 743 553 272 0 13 chr12 20747636 20747785 -100509745 - B1_Mm SINE Alu 0 147 1 4 743 518 54 14 0 chr12 20747965 20748039 -100509491 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 4 743 1363 211 84 86 chr12 20748181 20748539 -100508991 + MTD LTR MaLR 16 376 -43 4 743 666 196 33 53 chr12 20748539 20748690 -100508840 - B1_Mus1 SINE Alu 0 148 1 4 743 1363 211 84 86 chr12 20748690 20748736 -100508794 + MTD LTR MaLR 377 419 0 4 743 200 297 0 0 chr12 20748857 20748921 -100508609 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 743 261 116 0 0 chr12 20748955 20748998 -100508532 + MTC LTR MaLR 92 134 -287 4 743 218 81 0 26 chr12 20749528 20749566 -100507964 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 743 521 301 78 53 chr12 20749569 20749850 -100507680 - B4A SINE B4 0 292 5 4 743 520 268 81 0 chr12 20749978 20750101 -100507429 + ETnERV2-int LTR ERVK 7070 7202 -204 4 743 1576 48 0 11 chr12 20751461 20751651 -100505879 - B2_Mm1a SINE B2 -5 188 1 4 743 8957 10 0 0 chr12 20751837 20752821 -100504709 + L1Md_T LINE L1 5599 6582 0 4 743 228 122 0 0 chr12 20753203 20753244 -100504286 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 743 249 278 0 40 chr12 20753305 20753406 -100504124 - B4A SINE B4 -195 97 1 4 743 2698 75 0 28 chr12 20754112 20754467 -100503063 + IAPLTR4 LTR ERVK 1 345 0 4 743 753 226 10 69 chr12 20754467 20754526 -100503004 + IAPLTR3-int LTR ERVK 1 55 -6766 4 743 2595 29 45 0 chr12 20754526 20754838 -100502692 + IAPLTR3 LTR ERVK 1 326 0 4 743 753 226 10 69 chr12 20754838 20754982 -100502548 + IAPLTR3-int LTR ERVK 56 192 -6629 4 743 437 259 48 41 chr12 20755013 20755158 -100502372 + IAPLTR3-int LTR ERVK 337 482 -6339 4 743 1971 245 25 33 chr12 20755323 20755842 -100501688 + IAPLTR3-int LTR ERVK 440 954 -5867 4 743 331 183 15 104 chr12 20755816 20755950 -100501580 + MMERVK10C-int LTR ERVK 831 952 -6629 4 743 228 135 0 0 chr12 20756122 20756159 -100501371 + (A)n Simple_repeat Simple_repeat 1 37 0 4 743 1065 191 124 47 chr12 20756159 20756578 -100500952 + RMER16-int LTR ERVK 313 820 -4586 4 743 445 230 88 0 chr12 20756581 20756694 -100500836 + RMER16-int LTR ERVK 938 1060 -5077 4 743 350 244 0 55 chr12 20756707 20756798 -100500732 + ETnERV3-int LTR ERVK 2454 2539 -4867 4 743 6754 121 50 5 chr12 20756807 20758179 -100499351 + ETnERV3-int LTR ERVK 2732 4271 -3135 4 743 460 203 12 35 chr12 20758184 20758309 -100499221 + MMETn-int LTR ERVK 2357 2464 -2380 4 743 799 110 35 49 chr12 20758321 20758464 -100499066 + IAPLTR3-int LTR ERVK 4530 4670 -2911 4 743 6404 242 58 35 chr12 20758584 20761050 -100496480 + IAPLTR3-int LTR ERVK 5064 7329 -351 4 743 2830 58 0 28 chr12 20761050 20761405 -100496125 + IAPLTR4 LTR ERVK 1 345 0 4 743 258 326 31 0 chr12 20762256 20762354 -100495176 + MER5A1 DNA MER1_type 66 166 0 4 743 521 251 137 30 chr12 20762943 20763111 -100494419 - B3A SINE B2 -10 188 3 4 743 4489 14 0 0 chr12 20763825 20764318 -100493212 - MT2_Mm LTR ERVL 0 493 1 4 743 725 142 8 16 chr12 20764779 20764901 -100492629 - B1_Mus2 SINE Alu -26 121 1 4 743 407 219 0 110 chr12 20764801 20764919 -100492611 - MT2B LTR ERVL -346 255 151 4 743 229 254 0 80 chr12 20764919 20764938 -100492592 - ORR1B1-int LTR MaLR -762 747 622 4 743 840 182 173 0 chr12 20764953 20765178 -100492352 + Lx9 LINE L1 7381 7644 0 4 743 835 221 66 24 chr12 20765507 20765720 -100491810 - ID_B1 SINE B4 -2 222 1 4 743 230 288 184 14 chr12 20766013 20766154 -100491376 + Lx8 LINE L1 6967 7131 -342 4 743 846 143 6 12 chr12 20766223 20766386 -100491144 + GA-rich Low_complexity Low_complexity 3 164 0 4 743 280 238 121 16 chr12 20766413 20766537 -100490993 + Lx8 LINE L1 7335 7471 -2 4 743 264 127 45 60 chr12 20766609 20766676 -100490854 + (CCCTAA)n Simple_repeat Simple_repeat 5 70 0 4 743 329 292 0 44 chr12 20766715 20766851 -100490679 + MT2A LTR ERVL 74 203 -330 4 743 469 248 48 48 chr12 20767199 20767428 -100490102 - L1_Mur3 LINE L1 -6622 1090 862 4 743 295 348 70 32 chr12 20769557 20769744 -100487786 + MTD LTR MaLR 20 213 -206 4 743 1747 175 64 21 chr12 20769754 20770056 -100487474 - RLTR9D LTR ERVK -14 389 70 4 743 3287 36 10 5 chr12 20770056 20770450 -100487080 + MTA_Mm LTR MaLR 1 396 0 5 743 1747 175 64 21 chr12 20770450 20770520 -100487010 - RLTR9D LTR ERVK -334 69 1 4 743 277 335 126 16 chr12 20770522 20770713 -100486817 + MTD LTR MaLR 192 403 -16 4 743 180 77 0 0 chr12 20770725 20770751 -100486779 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 743 359 332 89 26 chr12 20770770 20771036 -100486494 + MTD-int LTR MaLR 24 328 -1252 4 743 5924 233 18 9 chr12 20771104 20772521 -100485009 - Lx4B LINE L1 -4 7054 5642 5 743 1172 303 90 50 chr12 20772584 20773250 -100484280 + MTD-int LTR MaLR 748 1440 -140 4 743 227 213 0 0 chr12 20773297 20773344 -100484186 + T-rich Low_complexity Low_complexity 1 47 0 5 743 238 270 33 50 chr12 20773353 20773474 -100484056 - Lx4B LINE L1 -4 7054 6936 5 743 227 344 77 53 chr12 20773590 20773799 -100483731 - B3 SINE B2 0 216 3 5 743 594 231 14 0 chr12 20773893 20774040 -100483490 + MurSatRep1 Unknown Unknown 2 150 -1987 5 743 311 288 119 0 chr12 20774042 20774160 -100483370 - B1_Mur2 SINE Alu -17 132 1 5 743 7928 199 35 30 chr12 20774160 20775001 -100482529 + MurSatRep1 Unknown Unknown 284 1119 -1018 5 743 1311 116 5 0 chr12 20775001 20775190 -100482340 - B2_Mm1a SINE B2 -2 191 2 5 743 7928 199 35 30 chr12 20775190 20776191 -100481339 + MurSatRep1 Unknown Unknown 1120 2135 -2 5 743 461 317 38 33 chr12 20776232 20776779 -100480751 + MurSatRep1 Unknown Unknown 1752 2049 -88 5 743 2927 104 0 2 chr12 20776824 20777230 -100480300 + L1_Mus1 LINE L1 6163 6567 0 5 743 420 238 5 10 chr12 20777252 20777392 -100480138 + MMSAT4 Satellite Satellite 1 139 0 5 743 307 246 0 0 chr12 20777642 20777711 -100479819 + ORR1C2 LTR MaLR 302 370 -14 5 743 884 153 21 0 chr12 20778003 20778147 -100479383 + B1_Mus1 SINE Alu 2 148 0 5 743 2187 244 78 9 chr12 20778415 20779035 -100478495 - L1_Mur2 LINE L1 -3798 2082 1411 5 743 311 0 26 0 chr12 20779035 20779074 -100478456 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 743 2187 251 74 16 chr12 20779074 20779530 -100478000 - L1_Mur2 LINE L1 -4470 1410 1002 5 743 423 0 0 0 chr12 20780081 20780128 -100477402 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 743 360 0 0 0 chr12 20780128 20780167 -100477363 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 743 24 0 0 0 chr12 20780189 20780213 -100477317 + AT_rich Low_complexity Low_complexity 1 24 0 5 743 571 237 53 17 chr12 20780213 20780396 -100477134 - Lx2B LINE L1 -162 6814 6631 5 743 258 56 0 0 chr12 20780444 20780480 -100477050 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 743 358 215 130 9 chr12 20780480 20780588 -100476942 - L1MC3 LINE L1 -1139 6646 6526 5 743 310 207 0 29 chr12 20780616 20780790 -100476740 + (TA)n Simple_repeat Simple_repeat 2 170 0 5 743 414 136 0 0 chr12 20780761 20780842 -100476688 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 5 743 587 310 40 92 chr12 20781025 20781235 -100476295 + RLTR11A2 LTR ERVK 132 346 -181 5 743 871 113 105 0 chr12 20781235 20781368 -100476162 + B1_Mm SINE Alu 1 147 0 5 743 571 310 40 92 chr12 20781368 20781484 -100476046 + RLTR11A2 LTR ERVK 333 441 -87 5 743 334 284 98 59 chr12 20781502 20781756 -100475774 - L1MEc LINE L1 -4070 2330 2067 5 743 566 170 20 7 chr12 20781949 20782097 -100475433 + (CA)n Simple_repeat Simple_repeat 1 150 0 5 743 408 207 30 3 chr12 20782109 20782423 -100475107 + (CA)n Simple_repeat Simple_repeat 1 322 0 5 743 242 221 53 34 chr12 20782437 20782541 -100474989 - L1M1 LINE L1 -411 5889 5786 5 743 350 207 265 8 chr12 20783053 20783170 -100474360 + L1MC1 LINE L1 6187 6333 0 5 743 2025 118 59 9 chr12 20783178 20783519 -100474011 + L1_Mus3 LINE L1 6277 6634 -4 5 743 660 238 48 0 chr12 20783533 20783680 -100473850 + B3A SINE B2 4 157 -41 5 743 281 282 138 42 chr12 20784087 20784276 -100473254 + MIRc SINE MIR 2 208 -60 5 743 270 243 0 28 chr12 20784852 20784864 -100472666 + (CA)n Simple_repeat Simple_repeat 2 13 0 5 743 426 20 0 0 chr12 20784864 20784915 -100472615 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 743 270 243 0 28 chr12 20784915 20784974 -100472556 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 743 222 254 43 43 chr12 20785275 20785345 -100472185 + B1_Mur1 SINE Alu 41 110 -39 5 743 184 287 85 54 chr12 20786430 20786559 -100470971 - L2a LINE L2 -196 3230 3098 5 743 219 266 145 34 chr12 20787753 20787870 -100469660 - MIRc SINE MIR -125 143 14 5 743 302 247 72 24 chr12 20788425 20788508 -100469022 + PB1D10 SINE Alu 17 103 -14 5 743 825 167 7 20 chr12 20788510 20788657 -100468873 + B1_Mur4 SINE Alu 1 145 -5 5 743 240 224 36 95 chr12 20788684 20788768 -100468762 + ID SINE ID 3 81 -143 5 743 6384 236 49 24 chr12 20788774 20790368 -100467162 - MMERGLN-int LTR ERV1 -5912 1644 1 5 743 2135 197 26 48 chr12 20790368 20790827 -100466703 - RLTR1D LTR ERV1 0 605 157 5 743 34942 70 15 1 chr12 20791402 20797754 -100459776 - L1Md_F2 LINE L1 -12 6570 189 5 743 477 0 0 0 chr12 20798164 20798217 -100459313 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 743 347 145 14 0 chr12 20799189 20799258 -100458272 + CT-rich Low_complexity Low_complexity 2 71 0 5 743 447 234 9 27 chr12 20799974 20800084 -100457446 - PB1D9 SINE Alu 0 120 13 5 743 253 224 21 124 chr12 20799997 20800094 -100457436 - MT2B LTR ERVL -350 251 165 5 743 676 258 37 27 chr12 20800277 20800464 -100457066 + B3 SINE B2 28 216 0 5 743 766 106 8 16 chr12 20800541 20800666 -100456864 + B1_Mm SINE Alu 24 147 0 5 743 350 252 77 17 chr12 20800689 20800806 -100456724 + ID_B1 SINE B4 74 197 -27 5 743 2310 142 0 45 chr12 20800806 20801182 -100456348 + RLTR10D LTR ERVK 1 359 0 5 743 8033 67 23 25 chr12 20801182 20802240 -100455290 + IAP-d-int LTR ERVK 1 1056 -5486 5 743 12814 67 0 1 chr12 20802239 20803812 -100453718 + IAP-d-int LTR ERVK 4971 6542 0 5 743 1091 89 0 0 chr12 20803812 20803958 -100453572 + RLTR10D LTR ERVK 1 146 -213 5 743 687 126 0 26 chr12 20803948 20804062 -100453468 + URR1B DNA MER1_type 115 225 0 5 743 700 233 55 30 chr12 20804879 20805078 -100452452 + B4A SINE B4 2 205 -87 5 743 679 258 0 0 chr12 20805288 20805412 -100452118 + RSINE1 SINE B4 3 126 -39 5 743 240 295 62 119 chr12 20805412 20805465 -100452065 + B2_Mm1a SINE B2 2 168 -25 5 743 241 276 206 12 chr12 20805476 20805631 -100451899 - MER2 DNA MER2_type -154 191 7 5 743 226 312 81 18 chr12 20806243 20806354 -100451176 + MIRb SINE MIR 23 140 -128 5 743 1940 144 26 7 chr12 20806359 20806667 -100450863 - MTC LTR MaLR 0 421 108 5 743 625 202 53 30 chr12 20806670 20806803 -100450727 + B1_Mur3 SINE Alu 2 137 -12 5 743 312 27 0 0 chr12 20806803 20806840 -100450690 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 5 743 234 231 0 0 chr12 20806840 20806905 -100450625 + GA-rich Low_complexity Low_complexity 1 65 0 5 743 583 231 17 0 chr12 20806905 20807022 -100450508 - MTC LTR MaLR -302 119 1 5 743 273 151 74 6 chr12 20808122 20808176 -100449354 + MTE2a LTR MaLR 1 52 -369 5 743 800 209 76 47 chr12 20808198 20808421 -100449109 - B3 SINE B2 0 195 3 5 743 838 133 29 7 chr12 20808451 20808587 -100448943 - B1_Mur3 SINE Alu -1 148 10 5 743 1305 183 0 4 chr12 20808616 20808841 -100448689 + URR1B DNA MER1_type 1 224 -1 5 743 783 243 137 100 chr12 20808841 20809161 -100448369 + MTE2a LTR MaLR 43 374 -5 5 743 367 264 55 0 chr12 20809271 20809362 -100448168 + RSINE1 SINE B4 42 137 -28 5 743 204 97 0 0 chr12 20809384 20809415 -100448115 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 743 266 203 107 27 chr12 20809415 20809602 -100447928 - RMER17C LTR ERVK -179 231 30 5 743 214 182 0 0 chr12 20810250 20810294 -100447236 + T-rich Low_complexity Low_complexity 2 45 0 5 743 234 235 0 0 chr12 20810326 20810407 -100447123 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 743 2519 130 5 36 chr12 20811258 20811674 -100445856 - RLTR9E LTR ERVK -6 403 1 5 743 450 132 0 26 chr12 20811674 20811752 -100445778 - ETnERV2-int LTR ERVK 0 7406 7331 5 743 1106 46 0 0 chr12 20811906 20812036 -100445494 + B1_Mus2 SINE Alu 3 132 -15 5 743 242 56 0 0 chr12 20812036 20812072 -100445458 + B1_Mus2 SINE Alu 112 147 0 5 743 362 239 16 74 chr12 20812073 20812195 -100445335 + L1_Mur3 LINE L1 1722 1836 -4044 5 743 5109 115 24 48 chr12 20812759 20813667 -100443863 + RMER17D LTR ERVK 2 887 -2 5 743 233 315 75 71 chr12 20814079 20814291 -100443239 - MT2B LTR ERVL 0 601 389 5 743 440 197 82 30 chr12 20814485 20814708 -100442822 - Lx9 LINE L1 -2 7642 7381 5 743 951 116 29 0 chr12 20814760 20814898 -100442632 + B1_Mm SINE Alu 1 142 -5 5 743 298 81 0 46 chr12 20814900 20814965 -100442565 + (CAAAAA)n Simple_repeat Simple_repeat 5 66 0 5 743 488 262 138 11 chr12 20815235 20815409 -100442121 + B3A SINE B2 3 198 0 5 743 218 274 11 56 chr12 20815820 20815909 -100441621 + MER5B DNA MER1_type 32 116 -62 5 743 336 302 31 86 chr12 20815983 20816146 -100441384 - MER5A1 DNA MER1_type 0 166 13 5 743 298 258 0 40 chr12 20817658 20817759 -100439771 + B4A SINE B4 1 97 -195 5 743 513 32 0 0 chr12 20817820 20817883 -100439647 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 743 199 297 85 25 chr12 20818212 20818340 -100439190 + MIRm SINE MIR 15 161 -115 5 743 3456 87 79 4 chr12 20819497 20819980 -100437550 + MURVY-LTR LTR ERV1 1 519 0 5 743 235 214 0 18 chr12 20821623 20821680 -100435850 + (CGGGG)n Simple_repeat Simple_repeat 5 60 0 5 743 897 167 0 0 chr12 20823298 20823583 -100433947 + (CA)n Simple_repeat Simple_repeat 1 285 0 5 743 313 200 0 85 chr12 20823595 20823677 -100433853 + HAL1-3A_ME LINE L1 1978 2052 -806 5 743 345 247 12 0 chr12 20823696 20823777 -100433753 - ID2 SINE ID 0 83 2 5 743 731 218 0 40 chr12 20823897 20824045 -100433485 + B1_Mur3 SINE Alu 2 143 -6 5 743 406 332 47 21 chr12 20824063 20824297 -100433233 + MER46C DNA MER2_type 92 331 -7 5 743 1544 224 80 8 chr12 20824530 20824917 -100432613 + MTD LTR MaLR 5 419 0 5 743 180 0 0 0 chr12 20825309 20825329 -100432201 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 743 1040 105 7 0 chr12 20825329 20825472 -100432058 - B1_Mus2 SINE Alu -2 145 2 5 743 481 250 9 0 chr12 20825522 20825634 -100431896 + PB1D9 SINE Alu 2 114 -6 5 743 286 224 52 0 chr12 20826528 20826586 -100430944 - B3 SINE B2 -67 149 89 5 743 262 61 20 20 chr12 20826594 20826644 -100430886 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 5 743 1110 95 0 0 chr12 20826649 20826796 -100430734 - B1_Mus1 SINE Alu 0 148 2 5 743 507 245 0 30 chr12 20826796 20826897 -100430633 - B3 SINE B2 -117 99 2 5 743 279 277 0 0 chr12 20826912 20826977 -100430553 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 743 686 234 68 29 chr12 20826985 20827188 -100430342 - B3 SINE B2 -4 212 13 6 743 787 185 20 7 chr12 20827326 20827473 -100430057 - B1_Mur1 SINE Alu 0 149 1 6 743 1151 305 99 120 chr12 20827735 20828443 -100429087 + MER63C DNA AcHobo 233 925 -5 6 743 210 154 0 0 chr12 20828687 20828726 -100428804 + A-rich Low_complexity Low_complexity 2 40 0 6 743 435 213 92 35 chr12 20828829 20828970 -100428560 + B1F SINE Alu 1 149 0 6 743 477 209 38 0 chr12 20830131 20830236 -100427294 + Lx3B LINE L1 6862 6970 -3 6 743 185 0 0 39 chr12 20830236 20830262 -100427268 + (TAA)n Simple_repeat Simple_repeat 2 26 0 6 743 1165 120 21 21 chr12 20830450 20830476 -100427054 - B2_Mm1a SINE B2 -6 187 161 6 743 375 23 0 0 chr12 20830476 20830520 -100427010 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 6 743 1165 120 21 21 chr12 20830520 20830680 -100426850 - B2_Mm1a SINE B2 -33 160 1 6 743 180 0 0 0 chr12 20831075 20831095 -100426435 + (TCC)n Simple_repeat Simple_repeat 1 20 0 6 743 369 0 0 0 chr12 20831484 20831525 -100426005 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 743 622 286 9 96 chr12 20831533 20831753 -100425777 - ID_B1 SINE B4 -22 202 2 6 743 275 317 135 35 chr12 20831758 20831987 -100425543 - L2b LINE L2 -184 3242 2991 6 743 632 282 97 42 chr12 20832147 20832384 -100425146 + B4A SINE B4 5 254 -38 6 743 508 53 13 13 chr12 20832413 20832490 -100425040 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 743 6574 149 47 40 chr12 20833126 20833631 -100423899 - ETnERV2-int LTR ERVK -3154 4252 3774 6 743 1284 20 0 0 chr12 20833631 20833777 -100423753 - B1_Mus2 SINE Alu 0 147 2 6 743 6574 149 47 40 chr12 20833777 20834564 -100422966 - ETnERV2-int LTR ERVK -3633 3773 2953 6 743 208 77 51 0 chr12 20834564 20834603 -100422927 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 6 743 6574 197 94 94 chr12 20834603 20834902 -100422628 - ETnERV2-int LTR ERVK -4454 2952 2935 6 743 716 158 25 0 chr12 20834917 20835037 -100422493 - RMER16-int LTR ERVK -5077 1060 938 6 743 1959 169 106 22 chr12 20835040 20835561 -100421969 - RMER16-int LTR ERVK -4735 671 192 6 743 572 233 131 20 chr12 20836553 20836706 -100420824 - MTC LTR MaLR -239 182 13 6 743 535 85 10 21 chr12 20836845 20836941 -100420589 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 6 743 585 259 0 13 chr12 20837121 20837270 -100420260 + B1_Mm SINE Alu 1 147 0 6 743 234 128 26 0 chr12 20837509 20837548 -100419982 - MLT1C LTR MaLR -279 188 149 6 743 313 267 0 0 chr12 20837711 20837771 -100419759 - B3 SINE B2 -87 129 70 6 743 406 89 0 0 chr12 20838024 20838080 -100419450 - RMER6D LTR ERVK -664 56 1 6 743 564 288 68 0 chr12 20838452 20838584 -100418946 + RSINE1 SINE B4 21 161 -4 6 743 191 293 172 0 chr12 20839263 20839362 -100418168 - MIRm SINE MIR -146 130 15 6 743 252 59 0 0 chr12 20840162 20840196 -100417334 + (CCA)n Simple_repeat Simple_repeat 1 34 0 6 92 1961 169 59 24 chr12 20840271 20840646 -100416884 + MTC LTR MaLR 1 388 -33 6 744 3528 23 2 0 chr12 20840704 20841099 -100416431 + MTA_Mm LTR MaLR 1 396 0 6 744 220 294 71 27 chr12 20841595 20841707 -100415823 + L2c LINE L2 3218 3334 -53 6 744 1244 208 173 19 chr12 20842051 20842374 -100415156 + ORR1D1 LTR MaLR 1 373 -1 6 744 497 278 13 40 chr12 20842403 20842553 -100414977 + B1F SINE Alu 4 149 0 6 744 339 287 11 22 chr12 20842756 20842845 -100414685 + PB1D10 SINE Alu 17 104 -13 6 744 545 176 18 27 chr12 20843317 20843428 -100414102 - URR1B DNA MER1_type -15 210 101 6 744 1011 92 7 0 chr12 20843443 20843584 -100413946 - B1_Mm SINE Alu 0 147 6 6 744 319 89 0 0 chr12 20843591 20843636 -100413894 - URR1B DNA MER1_type -114 111 67 6 744 747 292 9 38 chr12 20844094 20844304 -100413226 + B3 SINE B2 2 205 -11 6 744 1667 206 70 8 chr12 20844841 20845213 -100412317 - MTD LTR MaLR 0 419 25 6 744 4323 233 48 55 chr12 20845226 20846391 -100411139 - MTD-int LTR MaLR -6 1252 96 6 744 793 226 196 6 chr12 20846449 20846774 -100410756 + MTD LTR MaLR 3 419 0 6 744 493 237 69 19 chr12 20846780 20846939 -100410591 + MTD-int LTR MaLR 1 167 -1091 6 744 566 282 45 6 chr12 20847082 20847239 -100410291 + RSINE1 SINE B4 3 165 0 6 744 894 131 14 0 chr12 20847360 20847505 -100410025 - B1_Mus1 SINE Alu -1 147 1 6 744 908 196 0 13 chr12 20847553 20847703 -100409827 + B1_Mur1 SINE Alu 2 149 0 6 744 310 242 45 0 chr12 20847724 20847790 -100409740 + ID4_ SINE ID 9 77 -6 6 744 275 298 60 0 chr12 20847790 20847808 -100409722 + ID_B1 SINE B4 9 97 -127 6 744 1192 82 4 15 chr12 20847839 20848113 -100409417 + (TAGA)n Simple_repeat Simple_repeat 1 270 0 6 744 756 80 0 0 chr12 20848115 20848228 -100409302 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 6 744 555 258 119 15 chr12 20848733 20848934 -100408596 - B4A SINE B4 -68 224 3 6 744 249 198 91 23 chr12 20848959 20849047 -100408483 + MLT1C LTR MaLR 160 253 -137 6 744 2340 81 9 6 chr12 20849073 20849396 -100408134 - MTB LTR MaLR 0 400 77 6 744 2009 223 111 97 chr12 20849398 20850249 -100407281 + RLTR13D6 LTR ERVK 1 893 0 6 744 453 134 58 47 chr12 20850249 20850323 -100407207 - MTA_Mm LTR MaLR -320 76 2 6 744 308 300 48 40 chr12 20850327 20850452 -100407078 + MLT1C LTR MaLR 333 458 -9 6 744 334 268 22 191 chr12 20850436 20850713 -100406817 + MT2B LTR ERVL 49 278 -323 6 744 895 149 7 0 chr12 20850597 20850738 -100406792 + B1_Mus2 SINE Alu 5 146 -1 6 744 292 235 103 0 chr12 20850751 20850819 -100406711 - ID_B1 SINE B4 -99 125 51 6 744 486 273 72 66 chr12 20850864 20851182 -100406348 + RLTR46 LTR ERVK 1 320 0 6 744 261 275 77 77 chr12 20851188 20851318 -100406212 + IAPLTR3-int LTR ERVK 7 136 -6685 6 744 274 191 48 136 chr12 20851411 20851514 -100406016 + IAPLTR3-int LTR ERVK 353 446 -6375 6 744 36684 192 33 19 chr12 20851499 20855260 -100402270 + IAPEY3-int LTR ERVK 246 3948 -3732 6 744 180 244 61 49 chr12 20855260 20855342 -100402188 + L3 LINE CR1 3947 4029 -460 6 744 36684 192 33 19 chr12 20855342 20858762 -100398768 + IAPEY3-int LTR ERVK 3949 7317 -363 6 744 544 275 46 64 chr12 20858763 20859089 -100398441 + RLTR46 LTR ERVK 1 320 0 6 744 1029 261 23 0 chr12 20859192 20859410 -100398120 + MTEa LTR MaLR 5 227 -152 6 744 199 273 55 0 chr12 20859887 20859942 -100397588 + MIRc SINE MIR 94 151 -117 6 744 245 126 45 11 chr12 20860288 20860376 -100397154 + T-rich Low_complexity Low_complexity 2 92 0 6 744 555 247 83 121 chr12 20861241 20861628 -100395902 + RMER10A LTR ERVL 71 442 0 6 744 561 248 119 14 chr12 20861759 20861902 -100395628 - RSINE1 SINE B4 -2 163 6 6 744 813 200 44 26 chr12 20862541 20862736 -100394794 + MTD LTR MaLR 1 212 -209 6 744 765 264 31 2 chr12 20862736 20862918 -100394612 + B3 SINE B2 1 188 -10 6 744 423 0 0 0 chr12 20862918 20862965 -100394565 + (CATA)n Simple_repeat Simple_repeat 3 49 0 6 744 662 270 46 31 chr12 20862965 20862977 -100394553 + B3A SINE B2 189 198 0 6 744 946 228 39 19 chr12 20862993 20863199 -100394331 + MTD LTR MaLR 196 405 -14 6 744 822 144 0 67 chr12 20863582 20863731 -100393799 + B1_Mus1 SINE Alu 10 148 0 6 744 219 236 0 14 chr12 20863742 20863815 -100393715 + A-rich Low_complexity Low_complexity 4 75 0 6 744 665 221 76 70 chr12 20863829 20864014 -100393516 + B3 SINE B2 8 193 -23 6 744 846 235 16 21 chr12 20864065 20864085 -100393445 - B3A SINE B2 -8 190 172 6 744 258 32 0 0 chr12 20864085 20864116 -100393414 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 744 846 235 16 21 chr12 20864116 20864286 -100393244 - B3A SINE B2 -27 171 1 6 744 502 271 14 0 chr12 20864303 20864443 -100393087 + L1MD1 LINE L1 5422 5563 -679 6 744 1365 183 207 143 chr12 20864447 20864881 -100392649 + MT2A LTR ERVL 1 462 -71 6 744 4234 124 21 108 chr12 20864982 20865145 -100392385 - RMER17D2 LTR ERVK 0 809 644 6 744 210 71 0 0 chr12 20865145 20865173 -100392357 + (TGG)n Simple_repeat Simple_repeat 1 28 0 6 744 4234 124 21 108 chr12 20865173 20865895 -100391635 - RMER17D2 LTR ERVK -166 643 1 6 744 410 255 189 0 chr12 20865902 20866008 -100391522 + RSINE1 SINE B4 4 129 -36 6 744 442 332 183 4 chr12 20866065 20866322 -100391208 + L1MD1 LINE L1 5597 5899 -343 6 744 468 35 0 0 chr12 20866323 20866381 -100391149 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 744 1022 109 0 0 chr12 20866442 20866580 -100390950 - B1_Mus1 SINE Alu -10 138 1 6 744 249 33 0 0 chr12 20866603 20866633 -100390897 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 744 707 272 14 46 chr12 20866638 20866854 -100390676 - ID_B1 SINE B4 -14 210 2 6 744 1110 61 0 0 chr12 20868775 20868922 -100388608 + (TCTCCC)n Simple_repeat Simple_repeat 5 151 0 6 744 457 205 157 33 chr12 20868929 20869050 -100388480 - B1_Mur2 SINE Alu -13 136 1 6 744 766 232 77 0 chr12 20869076 20869270 -100388260 - B3 SINE B2 -5 211 3 6 744 269 118 0 19 chr12 20869744 20869796 -100387734 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 6 744 766 186 36 0 chr12 20869797 20869937 -100387593 - B1_Mus1 SINE Alu -1 147 3 6 744 718 130 0 15 chr12 20870277 20870410 -100387120 + (TCCCC)n Simple_repeat Simple_repeat 1 131 0 6 744 313 93 0 0 chr12 20870971 20871014 -100386516 + URR1B DNA MER1_type 183 225 0 6 744 602 292 70 29 chr12 20871305 20871577 -100385953 - B4A SINE B4 -8 284 2 6 744 206 312 5 59 chr12 20871994 20872181 -100385349 + CT-rich Low_complexity Low_complexity 3 179 0 6 744 3674 42 7 2 chr12 20872525 20872959 -100384571 + RLTR10C LTR ERVK 1 436 0 6 744 1557 33 0 0 chr12 20872959 20873139 -100384391 + MMERVK10C-int LTR ERVK 1 180 -7401 6 744 225 184 0 0 chr12 20873139 20873177 -100384353 + RLTR27 LTR ERVK 231 268 -41 6 744 410 0 0 0 chr12 20873180 20873224 -100384306 + MMERVK10C-int LTR ERVK 224 267 -7314 6 744 305 127 55 44 chr12 20873306 20873397 -100384133 + GA-rich Low_complexity Low_complexity 3 94 0 6 744 344 89 0 0 chr12 20873397 20873442 -100384088 + MMERVK10C-int LTR ERVK 93 137 -6405 6 744 1960 47 2 2 chr12 20873445 20873879 -100383651 + MMERVK10C-int LTR ERVK 652 887 -1100 6 744 8737 39 10 0 chr12 20873872 20874883 -100382647 + MMERVK10C-int LTR ERVK 4790 5810 -1771 6 744 8267 33 0 0 chr12 20874874 20875805 -100381725 + MMERVK10C-int LTR ERVK 6651 7581 0 6 744 3350 44 2 130 chr12 20875805 20876305 -100381225 + RLTR10C LTR ERVK 1 436 0 6 744 327 316 8 41 chr12 20876781 20876903 -100380627 + MIRb SINE MIR 2 119 -149 6 744 355 294 28 0 chr12 20876910 20877019 -100380511 - PB1D7 SINE Alu -6 114 3 6 744 239 284 94 8 chr12 20877206 20877323 -100380207 - L2c LINE L2 -223 3164 3038 6 744 744 241 24 12 chr12 20877403 20877567 -100379963 + B3A SINE B2 3 168 -30 6 744 650 220 16 42 chr12 20878132 20878323 -100379207 - B3 SINE B2 0 195 15 6 744 434 219 66 66 chr12 20878354 20878491 -100379039 - B1F1 SINE Alu 0 149 13 6 744 447 218 0 0 chr12 20878476 20878554 -100378976 - RSINE1 SINE B4 -32 133 56 6 744 346 279 0 0 chr12 20878561 20878647 -100378883 - PB1D10 SINE Alu 0 117 32 6 744 662 83 0 0 chr12 20878722 20878806 -100378724 + B2_Mm2 SINE B2 3 86 -109 7 744 585 0 0 0 chr12 20878806 20878871 -100378659 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 744 506 183 20 61 chr12 20878871 20878885 -100378645 + B3A SINE B2 89 97 -101 7 744 246 193 0 0 chr12 20880168 20880225 -100377305 + CT-rich Low_complexity Low_complexity 4 60 0 7 744 658 175 77 42 chr12 20880229 20880372 -100377158 - B1_Mur3 SINE Alu 0 149 2 7 744 2024 132 10 10 chr12 20880375 20880689 -100376841 + MTC LTR MaLR 108 421 0 7 744 180 247 36 118 chr12 20880692 20880802 -100376728 - MIRc SINE MIR -129 139 39 7 744 211 180 19 39 chr12 20880907 20880959 -100376571 + C-rich Low_complexity Low_complexity 4 54 0 7 744 263 249 196 41 chr12 20881419 20881587 -100375943 + MER2 DNA MER2_type 7 200 -145 7 744 720 232 0 0 chr12 20881637 20881762 -100375768 - RSINE1 SINE B4 -38 127 3 7 744 669 244 60 30 chr12 20881990 20882189 -100375341 - B4A SINE B4 -86 206 2 7 744 639 0 0 0 chr12 20882240 20882311 -100375219 + (TTTTG)n Simple_repeat Simple_repeat 3 73 0 7 744 1359 152 9 18 chr12 20883079 20883307 -100374223 - URR1A DNA MER1_type 0 226 1 7 744 663 225 8 0 chr12 20884798 20884927 -100372603 + ID_B1 SINE B4 88 217 -7 7 744 608 180 47 54 chr12 20884959 20885088 -100372442 + B1_Mur3 SINE Alu 9 136 -13 7 744 290 148 25 0 chr12 20885097 20885178 -100372352 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 7 744 554 204 68 8 chr12 20885386 20885519 -100372011 - ID_B1 SINE B4 -2 222 82 7 744 379 0 39 0 chr12 20885532 20885583 -100371947 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 7 744 873 70 0 0 chr12 20885583 20885697 -100371833 - B1_Mm SINE Alu -12 135 22 7 744 666 246 44 28 chr12 20885772 20885952 -100371578 - B3 SINE B2 0 216 34 7 744 437 268 0 9 chr12 20886142 20886255 -100371275 + PB1D9 SINE Alu 9 120 0 7 744 883 97 14 0 chr12 20886975 20887120 -100370410 + (GGAA)n Simple_repeat Simple_repeat 1 147 0 7 744 813 49 0 0 chr12 20888099 20888201 -100369329 + (CA)n Simple_repeat Simple_repeat 2 103 0 7 744 235 328 123 15 chr12 20888633 20888763 -100368767 + MLT1J1 LTR MaLR 283 426 -18 7 744 182 62 31 0 chr12 20890005 20890037 -100367493 + (TCC)n Simple_repeat Simple_repeat 1 33 0 7 744 1056 190 28 5 chr12 20890250 20890467 -100367063 + URR1B DNA MER1_type 1 222 -3 7 744 358 287 54 8 chr12 20890516 20890646 -100366884 + MER33 DNA MER1_type 189 324 0 7 744 538 280 31 19 chr12 20891124 20891284 -100366246 + RSINE1 SINE B4 1 162 -3 7 744 2435 74 0 69 chr12 20891999 20892346 -100365184 - ORR1A2 LTR MaLR -4 323 1 7 744 237 232 0 0 chr12 20892359 20892428 -100365102 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 744 970 131 0 0 chr12 20892515 20892652 -100364878 - B1_Mur4 SINE Alu -13 137 1 7 744 294 342 58 45 chr12 20892673 20892829 -100364701 - B3A SINE B2 -3 195 38 7 744 669 273 14 72 chr12 20892863 20893072 -100364458 - B4A SINE B4 -72 220 24 7 744 659 244 42 42 chr12 20893982 20894196 -100363334 - ID_B1 SINE B4 -8 216 3 7 744 949 149 7 0 chr12 20894243 20894391 -100363139 - B1_Mur4 SINE Alu -1 149 1 7 744 286 226 167 0 chr12 20894393 20894477 -100363053 - PB1D10 SINE Alu -14 103 6 7 744 818 78 9 0 chr12 20896895 20897010 -100360520 - B1_Mm SINE Alu -31 116 1 7 744 569 307 38 19 chr12 20897011 20897220 -100360310 - RLTR11A2 LTR ERVK -181 346 134 7 744 207 100 0 0 chr12 20897404 20897434 -100360096 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 7 744 438 198 4 12 chr12 20897435 20897689 -100359841 + (TA)n Simple_repeat Simple_repeat 1 251 0 7 744 640 220 54 11 chr12 20897731 20897913 -100359617 + Lx2B LINE L1 6625 6814 -162 7 744 26 30 0 0 chr12 20897913 20897946 -100359584 + AT_rich Low_complexity Low_complexity 1 33 0 7 744 348 24 0 0 chr12 20897959 20898000 -100359530 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 744 315 0 0 0 chr12 20898000 20898034 -100359496 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 744 1282 183 33 72 chr12 20898456 20898791 -100358739 + RLTRETN_Mm LTR ERVK 1 322 0 7 744 5734 55 0 6 chr12 20898791 20899484 -100358046 + ETnERV-int LTR ERVK 1 689 -2625 7 744 15777 163 28 30 chr12 20899475 20902274 -100355256 + ETnERV2-int LTR ERVK 4619 7380 -26 7 744 1249 175 42 78 chr12 20902274 20902608 -100354922 + RLTRETN_Mm LTR ERVK 1 322 0 7 744 343 272 59 68 chr12 20902748 20902888 -100354642 + L1_Mur3 LINE L1 1032 1171 -6541 7 744 1211 35 21 0 chr12 20902888 20903033 -100354497 + B1_Mus1 SINE Alu 1 148 0 7 744 343 272 59 68 chr12 20903033 20903113 -100354417 + L1_Mur3 LINE L1 1172 1250 -6462 7 744 2062 234 83 35 chr12 20903134 20904062 -100353468 + L1_Mur3 LINE L1 1152 2127 -3753 7 744 799 142 90 0 chr12 20904251 20904385 -100353145 - B1_Mus1 SINE Alu 0 148 3 7 744 325 269 0 0 chr12 20904681 20904759 -100352771 - MTD LTR MaLR -14 370 293 7 744 276 310 27 19 chr12 20905054 20905262 -100352268 - MMSAT4 Satellite Satellite 0 209 1 7 744 3067 89 0 2 chr12 20905281 20905687 -100351843 - L1_Mus1 LINE L1 0 6567 6163 7 744 499 305 86 53 chr12 20905735 20906366 -100351164 - MurSatRep1 Unknown Unknown 0 2137 1691 7 744 448 271 20 20 chr12 20906320 20906627 -100350903 - MMSAT4 Satellite Satellite 0 307 1 7 744 263 335 57 34 chr12 20906486 20906783 -100350747 - MurSatRep1 Unknown Unknown 0 2137 1834 7 744 8301 186 98 30 chr12 20906824 20907824 -100349706 - MurSatRep1 Unknown Unknown -2 2135 1120 7 744 1242 115 33 0 chr12 20907824 20908007 -100349523 + B2_Mm1a SINE B2 2 190 -3 7 744 8301 186 98 30 chr12 20908007 20908853 -100348677 - MurSatRep1 Unknown Unknown -1018 1119 177 7 744 303 301 73 0 chr12 20908853 20908976 -100348554 + B1_Mur2 SINE Alu 1 132 -17 7 744 8301 186 98 30 chr12 20908976 20909125 -100348405 - MurSatRep1 Unknown Unknown -1961 176 3 7 744 299 350 67 43 chr12 20909218 20909427 -100348103 + B3 SINE B2 3 216 0 7 744 295 243 18 45 chr12 20909551 20909663 -100347867 + Lx4B LINE L1 6946 7054 -4 7 744 1643 324 34 42 chr12 20909762 20910469 -100347061 - MTD-int LTR MaLR -108 1262 562 7 744 4739 226 15 9 chr12 20910479 20911569 -100345961 + Lx4B LINE L1 5637 6732 -326 7 744 3883 110 12 35 chr12 20911569 20912183 -100345347 - RLTR13B4 LTR ERVK -3 899 271 7 744 10641 56 1 0 chr12 20912183 20914124 -100343406 - L1Md_F2 LINE L1 -64 6518 4577 7 744 2282 108 19 8 chr12 20914124 20914523 -100343007 - RLTR13B1 LTR ERVK -497 405 1 7 744 1339 243 16 0 chr12 20914523 20914832 -100342698 + Lx4B LINE L1 6741 7054 -4 7 744 502 353 34 13 chr12 20914965 20915200 -100342330 - MTD-int LTR MaLR -1107 263 24 7 744 288 339 53 53 chr12 20915260 20915453 -100342077 - MTD LTR MaLR -16 403 211 7 744 1986 166 70 34 chr12 20915453 20915531 -100341999 + RLTR9D LTR ERVK 1 74 -329 7 744 3281 43 5 5 chr12 20915531 20915927 -100341603 - MTA_Mm LTR MaLR 0 396 1 7 744 1986 166 70 34 chr12 20915927 20916235 -100341295 + RLTR9D LTR ERVK 75 401 -2 7 744 388 369 53 16 chr12 20916237 20916427 -100341103 - MTD LTR MaLR -208 211 15 7 744 490 265 70 46 chr12 20918460 20918745 -100338785 + L1_Mur3 LINE L1 815 1106 -6622 7 744 540 278 153 11 chr12 20919042 20919500 -100338030 + L1_Mur3 LINE L1 1314 1836 -4044 7 744 3251 151 34 13 chr12 20919652 20920209 -100337321 + RLTR1D LTR ERV1 21 589 -16 7 744 4739 117 103 30 chr12 20920625 20921452 -100336078 + RMER17D LTR ERVK 1 887 -2 7 744 4057 91 26 12 chr12 20921498 20922078 -100335452 + RLTR1D LTR ERV1 1 588 -17 7 744 392 302 54 113 chr12 20922451 20922860 -100334670 - MT2A LTR ERVL 0 601 74 7 744 284 223 129 24 chr12 20923026 20923150 -100334380 - Lx8 LINE L1 -2 7471 7335 7 744 338 107 0 18 chr12 20923169 20923226 -100334304 + (TCC)n Simple_repeat Simple_repeat 3 58 0 7 744 228 283 191 21 chr12 20923307 20923448 -100334082 - Lx8 LINE L1 -342 7131 6967 7 744 724 260 66 24 chr12 20923748 20923961 -100333569 + ID_B1 SINE B4 1 222 -2 7 744 871 178 173 0 chr12 20924297 20924522 -100333008 - Lx9 LINE L1 0 7644 7381 7 744 1106 96 0 0 chr12 20924575 20924721 -100332809 + B1_Mm SINE Alu 2 147 0 7 744 207 88 0 0 chr12 20924721 20924755 -100332775 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 7 744 477 255 135 29 chr12 20925026 20925196 -100332334 + B3A SINE B2 1 188 -10 7 744 206 241 22 67 chr12 20925613 20925702 -100331828 + MER5B DNA MER1_type 32 116 -62 7 744 819 160 2 0 chr12 20928567 20929009 -100328521 + (CA)n Simple_repeat Simple_repeat 1 443 0 7 744 323 134 13 118 chr12 20929040 20929116 -100328414 + HAL1-3A_ME LINE L1 1978 2045 -813 7 744 404 222 12 0 chr12 20929138 20929219 -100328311 - ID2 SINE ID 0 83 2 7 744 25 31 0 0 chr12 20929293 20929325 -100328205 + AT_rich Low_complexity Low_complexity 1 32 0 7 744 893 151 0 14 chr12 20929331 20929472 -100328058 + B1_Mur3 SINE Alu 5 143 -6 7 744 441 349 43 13 chr12 20929493 20929728 -100327802 + MER46C DNA MER2_type 96 337 -1 7 744 235 295 78 26 chr12 20930275 20930390 -100327140 + MIRb SINE MIR 23 143 -125 7 744 1972 126 16 10 chr12 20930392 20930704 -100326826 - MTC LTR MaLR 0 421 108 7 744 722 183 40 47 chr12 20930707 20930856 -100326674 + B1_Mur3 SINE Alu 2 149 0 7 744 207 188 0 0 chr12 20930856 20930904 -100326626 + GA-rich Low_complexity Low_complexity 1 48 0 7 744 517 161 20 51 chr12 20932180 20932193 -100325337 - B3A SINE B2 -101 97 89 7 744 576 0 0 0 chr12 20932193 20932257 -100325273 + (TC)n Simple_repeat Simple_repeat 2 65 0 7 744 675 48 0 0 chr12 20932257 20932341 -100325189 - B2_Mm2 SINE B2 -109 86 3 7 744 374 205 36 0 chr12 20932416 20932499 -100325031 + PB1D10 SINE Alu 32 117 0 7 744 477 205 0 0 chr12 20932506 20932584 -100324946 + RSINE1 SINE B4 56 133 -32 7 744 508 188 66 66 chr12 20932569 20932706 -100324824 + B1F1 SINE Alu 13 149 0 7 744 659 226 14 40 chr12 20932737 20932928 -100324602 + B3 SINE B2 15 195 0 7 744 776 236 33 23 chr12 20933447 20933659 -100323871 - B3A SINE B2 -1 215 3 7 744 217 310 93 52 chr12 20933662 20933856 -100323674 + L2c LINE L2 2963 3164 -223 7 744 232 167 267 0 chr12 20933985 20934045 -100323485 + RLTR6_Mm LTR ERV1 1 76 -578 7 744 2026 117 273 47 chr12 20934099 20934546 -100322984 + RLTR6_Mm LTR ERV1 37 584 -70 7 744 318 330 28 0 chr12 20934608 20934717 -100322813 + PB1D7 SINE Alu 3 114 -6 8 744 286 330 8 43 chr12 20934725 20934842 -100322688 - MIRb SINE MIR -150 118 6 8 744 183 80 0 0 chr12 20935885 20935910 -100321620 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 744 718 290 41 38 chr12 20936088 20936378 -100321152 + B4A SINE B4 2 292 0 8 744 391 263 55 49 chr12 20936642 20936661 -100320869 + CYRA11_Mm Unknown Y-chromosome 149 312 -304 8 744 890 140 0 7 chr12 20936661 20936805 -100320725 - URR1B DNA MER1_type 0 225 83 8 744 195 320 39 26 chr12 20937425 20937502 -100320028 + MIRb SINE MIR 86 163 -105 8 744 279 317 82 27 chr12 20937503 20937649 -100319881 - RMER15 LTR ERVL -6 569 416 8 744 3585 27 119 16 chr12 20937815 20938262 -100319268 - MT2_Mm LTR ERVL 0 493 1 8 744 323 242 3 32 chr12 20938350 20938450 -100319080 - MT2A LTR ERVL -496 105 9 8 744 877 249 9 33 chr12 20938943 20939229 -100318301 - MTE2a LTR MaLR -12 367 34 8 744 886 164 159 0 chr12 20939229 20939418 -100318112 + URR1A DNA MER1_type 2 220 -6 8 744 449 141 0 12 chr12 20940278 20940364 -100317166 + G-rich Low_complexity Low_complexity 2 86 0 8 744 641 171 89 0 chr12 20940703 20940826 -100316704 + B1_Mus1 SINE Alu 3 136 -12 8 744 662 55 0 11 chr12 20940826 20940918 -100316612 + (TAAA)n Simple_repeat Simple_repeat 2 92 0 8 744 280 328 78 31 chr12 20940978 20941107 -100316423 + MLT1F2 LTR MaLR 142 276 -284 8 744 698 238 89 0 chr12 20941398 20941566 -100315964 + B3 SINE B2 3 185 -31 8 744 564 276 47 16 chr12 20941897 20942026 -100315504 - ETnERV2-int LTR ERVK -204 7202 7070 8 744 481 186 148 33 chr12 20942087 20942209 -100315321 + B1_Mur2 SINE Alu 1 136 -13 8 744 757 82 29 15 chr12 20942216 20942353 -100315177 + (GGGAGA)n Simple_repeat Simple_repeat 5 143 0 8 744 426 120 0 0 chr12 20942521 20942596 -100314934 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 8 744 297 0 0 0 chr12 20942596 20942629 -100314901 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 744 225 315 75 43 chr12 20943970 20944063 -100313467 - RMER21A LTR ERV1 -593 354 259 8 744 730 274 13 44 chr12 20944900 20945129 -100312401 + ID_B1 SINE B4 3 224 0 8 744 895 143 0 0 chr12 20945161 20945294 -100312236 + B1_Mus1 SINE Alu 1 133 -15 8 744 669 25 0 0 chr12 20945391 20945470 -100312060 + (TC)n Simple_repeat Simple_repeat 1 79 0 8 744 492 328 184 0 chr12 20945485 20945741 -100311789 - L1MD2 LINE L1 -460 5899 5597 8 744 410 255 189 0 chr12 20945798 20945904 -100311626 - RSINE1 SINE B4 -36 129 4 8 744 4131 159 52 7 chr12 20945911 20946240 -100311290 + RMER17D2 LTR ERVK 1 349 -460 8 744 680 0 0 12 chr12 20946240 20946321 -100311209 + (TCTCC)n Simple_repeat Simple_repeat 2 81 0 8 744 4131 159 52 7 chr12 20946321 20946603 -100310927 + RMER17D2 LTR ERVK 350 641 -168 8 744 213 39 0 0 chr12 20946603 20946629 -100310901 + (CCA)n Simple_repeat Simple_repeat 2 27 0 8 744 4131 159 52 7 chr12 20946629 20946790 -100310740 + RMER17D2 LTR ERVK 642 808 -1 8 744 1450 174 179 134 chr12 20946867 20947335 -100310195 - MT2A LTR ERVL -71 462 1 8 744 519 273 14 0 chr12 20947336 20947479 -100310051 - L1MD2 LINE L1 -676 5566 5422 8 744 811 241 16 21 chr12 20947496 20947666 -100309864 + B3A SINE B2 1 171 -27 8 744 399 41 0 0 chr12 20947666 20947715 -100309815 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 744 811 241 16 21 chr12 20947715 20947735 -100309795 + B3A SINE B2 172 190 -8 8 744 647 216 82 71 chr12 20947786 20947970 -100309560 - B3 SINE B2 -23 193 8 8 744 228 236 0 14 chr12 20947984 20948057 -100309473 + T-rich Low_complexity Low_complexity 4 75 0 8 744 780 162 0 114 chr12 20948068 20948235 -100309295 - B1_Mus1 SINE Alu 0 148 1 8 744 981 218 39 19 chr12 20948600 20948806 -100308724 - MTD LTR MaLR -14 405 196 8 744 734 194 18 120 chr12 20948800 20948835 -100308695 - B2_Mm2 SINE B2 0 195 168 8 744 252 0 0 0 chr12 20948835 20948863 -100308667 + (TATG)n Simple_repeat Simple_repeat 2 29 0 8 744 821 194 18 120 chr12 20948863 20949044 -100308486 - B3 SINE B2 -42 174 1 8 744 843 214 102 26 chr12 20949044 20949239 -100308291 - MTD LTR MaLR -209 212 1 8 744 544 246 139 14 chr12 20949863 20950007 -100307523 + RSINE1 SINE B4 2 163 -2 8 744 456 252 234 57 chr12 20950146 20950276 -100307254 - RMER10A LTR ERVL 0 442 301 8 744 839 118 7 0 chr12 20950276 20950411 -100307119 + (GA)n Simple_repeat Simple_repeat 1 136 0 8 744 456 252 234 57 chr12 20950411 20950596 -100306934 - RMER10A LTR ERVL -142 300 71 8 744 352 332 38 48 chr12 20951072 20951281 -100306249 + MLT1N2 LTR MaLR 351 557 -5 8 744 192 301 95 26 chr12 20951462 20951578 -100305952 + MER5A DNA MER1_type 62 185 -4 8 744 214 286 54 0 chr12 20951667 20951723 -100305807 - MIRm SINE MIR -121 155 97 8 744 981 282 14 4 chr12 20952165 20952424 -100305106 - MTEa LTR MaLR -122 257 1 8 744 285 250 103 0 chr12 20952559 20952627 -100304903 + ID_B1 SINE B4 51 125 -99 8 744 273 280 35 78 chr12 20952587 20952640 -100304890 + PB1D10 SINE Alu 5 51 -66 8 744 997 137 7 0 chr12 20952640 20952786 -100304744 - B1_Mus1 SINE Alu -1 147 1 8 744 273 280 35 78 chr12 20952786 20952848 -100304682 + PB1D10 SINE Alu 52 115 -2 8 744 306 292 47 62 chr12 20952926 20953054 -100304476 - MLT1C LTR MaLR -9 458 333 8 744 411 114 82 41 chr12 20953058 20953131 -100304399 + MTA_Mm LTR MaLR 2 77 -319 8 744 2111 217 129 49 chr12 20953131 20953954 -100303576 - RLTR13D6 LTR ERVK 0 893 1 8 744 2295 103 9 6 chr12 20953954 20954279 -100303251 + MTB LTR MaLR 75 400 0 8 744 242 209 91 23 chr12 20954304 20954392 -100303138 - MLT1C LTR MaLR -137 253 160 8 744 595 258 119 15 chr12 20954417 20954618 -100302912 + B4A SINE B4 3 224 -68 8 744 276 222 0 0 chr12 20954740 20954794 -100302736 - MLT1C LTR MaLR -362 105 52 8 744 2199 100 33 3 chr12 20954794 20955096 -100302434 + RLTR10E LTR ERVK 1 311 0 8 744 623 125 10 0 chr12 20955438 20955542 -100301988 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 8 744 719 94 0 17 chr12 20955542 20955661 -100301869 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 8 744 313 270 40 0 chr12 20955709 20955783 -100301747 - ID4_ SINE ID -6 77 1 8 744 809 216 0 13 chr12 20955796 20955946 -100301584 - B1_Mur1 SINE Alu 0 149 2 8 744 865 158 7 0 chr12 20955994 20956140 -100301390 + B1_Mus1 SINE Alu 1 147 -1 8 744 613 274 38 6 chr12 20956265 20956423 -100301107 - RSINE1 SINE B4 0 165 3 8 744 383 261 77 19 chr12 20956566 20956722 -100300808 - MTD-int LTR MaLR -1091 167 3 8 744 769 213 242 3 chr12 20956730 20957062 -100300468 - MTD LTR MaLR 0 419 8 8 744 4112 222 49 94 chr12 20957126 20957911 -100299619 + MTD-int LTR MaLR 96 848 -410 8 744 1038 90 14 0 chr12 20957911 20958055 -100299475 + B1_Mm SINE Alu 2 147 0 8 744 4112 222 49 94 chr12 20958055 20958484 -100299046 + MTD-int LTR MaLR 849 1256 -2 8 744 1281 221 84 4 chr12 20958494 20958792 -100298738 + MTD LTR MaLR 25 322 -57 8 744 2524 112 148 0 chr12 20959057 20959475 -100298055 - RLTR45 LTR ERVK 0 482 3 8 744 337 80 0 0 chr12 20959477 20959527 -100298003 - RLTR45-int LTR ERVK 0 7244 7195 8 744 3742 193 17 19 chr12 20959520 20960454 -100297076 - RLTR45-int LTR ERVK -413 7804 6331 8 744 3708 60 22 38 chr12 20960543 20961041 -100296489 - RLTR45-int LTR ERVK -5596 1648 1159 8 744 1725 82 74 0 chr12 20961212 20961469 -100296061 - RLTR45-int LTR ERVK -6067 1177 902 8 744 1876 65 0 0 chr12 20961579 20961809 -100295721 - RLTR45-int LTR ERVK -6334 910 681 8 744 1117 61 0 39 chr12 20962150 20962304 -100295226 - RLTR45-int LTR ERVK -6548 696 549 8 744 3791 115 26 30 chr12 20963070 20963643 -100293887 - RLTR45-int LTR ERVK -6673 571 1 8 744 2610 117 126 2 chr12 20963643 20964072 -100293458 - RLTR45 LTR ERVK 0 482 1 8 744 673 129 70 145 chr12 20964192 20964239 -100293291 + URR1A DNA MER1_type 68 101 -125 8 744 1103 76 7 14 chr12 20964239 20964385 -100293145 + B1_Mus2 SINE Alu 1 145 -2 8 744 673 129 70 145 chr12 20964385 20964509 -100293021 + URR1A DNA MER1_type 102 226 0 8 744 379 257 0 125 chr12 20964941 20965061 -100292469 - PB1D10 SINE Alu 0 117 13 8 744 496 262 20 40 chr12 20965260 20965411 -100292119 - B1F SINE Alu 0 149 2 8 744 1324 203 165 6 chr12 20965438 20965760 -100291770 - ORR1D1 LTR MaLR -1 373 1 8 744 276 297 53 26 chr12 20966113 20966227 -100291303 - L2c LINE L2 -53 3334 3218 8 744 2010 154 67 24 chr12 20966776 20967148 -100290382 - MTC LTR MaLR -33 388 1 8 744 4252 31 0 0 chr12 20967225 20967707 -100289823 + LTRIS_Mm LTR ERV1 1 482 0 8 744 1010 88 0 108 chr12 20968203 20968369 -100289161 - B1_Mus1 SINE Alu 0 148 1 8 744 340 260 47 112 chr12 20968495 20968506 -100289024 - CYRA11_Mm Unknown Y-chromosome -295 322 239 8 744 594 165 66 119 chr12 20968506 20968657 -100288873 + URR1A DNA MER1_type 83 225 -1 8 744 1048 221 9 0 chr12 20968695 20968908 -100288622 - B3 SINE B2 0 216 2 8 744 251 304 0 61 chr12 20969836 20969934 -100287596 + MLT1K LTR MaLR 504 595 0 8 745 1450 276 11 35 chr12 20972158 20972191 -100285339 + ORR1D2 LTR MaLR 1 30 -340 8 745 1133 145 91 10 chr12 20972191 20972400 -100285130 - URR1A DNA MER1_type 0 226 1 8 745 1450 276 11 35 chr12 20972400 20972741 -100284789 + ORR1D2 LTR MaLR 31 366 -4 8 745 263 353 35 0 chr12 20972915 20973031 -100284499 - RMER15 LTR ERVL -16 559 440 8 745 1850 230 43 2 chr12 20973034 20973430 -100284100 + MTD LTR MaLR 5 416 -3 8 745 184 281 120 40 chr12 20973949 20974049 -100283481 - L3 LINE CR1 -3343 1146 1039 8 745 584 278 29 29 chr12 20974470 20974644 -100282886 - ID_B1 SINE B4 0 224 51 8 745 212 0 0 35 chr12 20975083 20975112 -100282418 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 8 745 422 235 122 157 chr12 20975335 20975532 -100281998 + B3A SINE B2 8 197 -1 8 745 591 196 10 10 chr12 20975539 20975642 -100281888 + B1_Mur2 SINE Alu 7 109 -40 8 745 507 282 17 0 chr12 20975849 20975966 -100281564 + RSINE1 SINE B4 3 121 -44 8 745 1314 95 16 0 chr12 20975967 20976157 -100281373 + B2_Mm2 SINE B2 1 193 -2 8 745 31 26 0 0 chr12 20976250 20976288 -100281242 + AT_rich Low_complexity Low_complexity 1 38 0 8 745 207 146 0 0 chr12 20976319 20976360 -100281170 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 8 745 335 250 13 13 chr12 20976850 20976927 -100280603 + ID2 SINE ID 2 78 -5 8 745 555 29 0 0 chr12 20977137 20977206 -100280324 + (CA)n Simple_repeat Simple_repeat 1 69 0 8 745 219 294 124 45 chr12 20977247 20977336 -100280194 - L2b LINE L2 -52 3323 3228 8 745 305 261 223 42 chr12 20977344 20977662 -100279868 - MTEa LTR MaLR 0 379 1 8 745 1021 150 0 0 chr12 20977897 20978044 -100279486 - B1_Mur1 SINE Alu 0 149 3 8 745 333 284 82 31 chr12 20978131 20978229 -100279301 + RSINE1 SINE B4 50 152 -13 8 745 1404 99 0 5 chr12 20978299 20978492 -100279038 + B2_Mm2 SINE B2 1 192 -3 8 745 2520 132 16 45 chr12 20979121 20979548 -100277982 - MTC LTR MaLR -6 415 1 8 745 535 276 73 0 chr12 20980565 20980688 -100276842 - RSINE1 SINE B4 -10 155 24 8 745 406 89 0 0 chr12 20981065 20981121 -100276409 + RMER6D LTR ERVK 1 56 -664 9 745 354 193 0 0 chr12 20981377 20981434 -100276096 + B3 SINE B2 73 129 -87 9 745 234 128 26 0 chr12 20981592 20981631 -100275899 + MLT1C LTR MaLR 149 188 -279 9 745 580 265 0 13 chr12 20981870 20982019 -100275511 - B1_Mm SINE Alu 0 147 1 9 745 647 35 12 0 chr12 20982199 20982285 -100275245 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 9 745 1431 207 107 27 chr12 20982427 20982764 -100274766 + MTD LTR MaLR 16 379 -40 9 745 749 186 7 54 chr12 20982783 20982931 -100274599 - B1_Mus1 SINE Alu 0 148 8 9 745 358 102 0 0 chr12 20982931 20982980 -100274550 + MTD LTR MaLR 373 421 0 9 745 306 93 0 0 chr12 20983199 20983242 -100274288 + MTC LTR MaLR 92 134 -287 9 745 454 57 14 14 chr12 20983780 20983851 -100273679 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 745 706 268 92 42 chr12 20983880 20984118 -100273412 - B4A SINE B4 -38 254 5 9 745 520 260 81 0 chr12 20984246 20984369 -100273161 + ETnERV2-int LTR ERVK 7070 7202 -204 9 745 323 299 135 35 chr12 20984778 20985007 -100272523 + L2b LINE L2 2991 3242 -184 9 745 624 237 50 128 chr12 20985012 20985230 -100272300 + ID_B1 SINE B4 2 202 -22 9 745 276 194 153 0 chr12 20985461 20985533 -100271997 - MER5A1 DNA MER1_type -71 95 13 9 745 797 90 203 0 chr12 20986028 20986161 -100271369 + B2_Mm1a SINE B2 1 160 -33 9 745 396 0 0 0 chr12 20986161 20986205 -100271325 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 9 745 530 167 37 0 chr12 20986447 20986555 -100270975 - Lx3B LINE L1 0 6973 6862 9 745 180 97 0 0 chr12 20986730 20986761 -100270769 + (T)n Simple_repeat Simple_repeat 1 31 0 9 745 1279 27 0 7 chr12 20986761 20986909 -100270621 - B1_Mus2 SINE Alu 0 147 1 9 745 1169 62 7 0 chr12 20987288 20987432 -100270098 + B1_Mm SINE Alu 3 147 0 9 745 1051 91 4 9 chr12 20987434 20987672 -100269858 + (GAAA)n Simple_repeat Simple_repeat 1 236 0 9 745 2010 102 28 22 chr12 20987968 20988288 -100269242 - RLTRETN_Mm LTR ERVK 0 322 1 9 745 340 259 8 114 chr12 20988630 20988761 -100268769 - PB1D10 SINE Alu 0 117 1 9 745 2299 71 29 3 chr12 20989181 20989492 -100268038 - IAPLTR2b LTR ERVK -8 319 1 9 745 566 302 33 11 chr12 20989492 20989675 -100267855 - MER63C DNA AcHobo -53 877 691 9 745 227 290 52 41 chr12 20989714 20989811 -100267719 + MER63D DNA AcHobo 537 634 -427 9 745 1028 302 122 17 chr12 20989746 20990163 -100267367 - MER63C DNA AcHobo -237 693 233 9 745 706 200 21 7 chr12 20990424 20990565 -100266965 + B1_Mur1 SINE Alu 1 143 -6 9 745 709 212 60 75 chr12 20990704 20990903 -100266627 + B3 SINE B2 9 204 -12 9 745 270 286 0 0 chr12 20990920 20990983 -100266547 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 745 426 221 159 124 chr12 20990999 20991076 -100266454 + B3 SINE B2 3 89 -127 9 745 925 91 27 40 chr12 20991076 20991225 -100266305 + B1_Mus1 SINE Alu 2 148 0 9 745 426 221 159 124 chr12 20991225 20991292 -100266238 + B3 SINE B2 90 152 -64 9 745 184 319 11 42 chr12 20991303 20991398 -100266132 + L2b LINE L2 3192 3283 -92 9 745 542 223 9 0 chr12 20992175 20992287 -100265243 - PB1D9 SINE Alu -6 114 2 9 745 1097 96 0 20 chr12 20992337 20992486 -100265044 + B1_Mus2 SINE Alu 2 147 0 9 745 1461 218 100 8 chr12 20992902 20993282 -100264248 - MTD LTR MaLR 0 419 5 9 745 465 356 44 12 chr12 20993508 20993758 -100263772 - MER46C DNA MER2_type -1 337 80 9 745 833 190 0 14 chr12 20993766 20993910 -100263620 - B1_Mur3 SINE Alu -6 143 2 9 745 27 62 0 0 chr12 20993913 20993961 -100263569 + AT_rich Low_complexity Low_complexity 1 48 0 9 745 328 259 12 0 chr12 20994030 20994111 -100263419 + ID2 SINE ID 2 83 0 9 745 878 158 4 0 chr12 20994168 20994431 -100263099 + (TG)n Simple_repeat Simple_repeat 1 264 0 9 745 1635 38 0 0 chr12 20994850 20995036 -100262494 - B2_Mm1a SINE B2 -6 187 2 9 745 22 0 0 0 chr12 20996257 20996279 -100261251 + GC_rich Low_complexity Low_complexity 1 22 0 9 745 1513 62 5 10 chr12 20999086 20999280 -100258250 - B2_Mm1a SINE B2 0 193 1 9 745 190 267 149 3 chr12 20999374 20999448 -100258082 - MIRm SINE MIR -115 161 74 9 745 441 36 0 0 chr12 20999832 20999887 -100257643 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 745 2233 39 4 0 chr12 21001666 21001926 -100255604 - RLTR10-int LTR ERVK -1686 301 41 1 745 2505 92 23 23 chr12 21001936 21002326 -100255204 - RLTR10 LTR ERVK 0 390 1 1 745 16486 29 34 1 chr12 21002328 21004246 -100253284 - RLTR10-int LTR ERVK -3 1984 3 1 745 358 162 0 149 chr12 21004248 21004335 -100253195 - RLTR10 LTR ERVK 0 390 317 1 745 296 378 15 30 chr12 21004477 21004608 -100252922 - MER3 DNA MER1_type -78 131 3 2 745 300 331 98 13 chr12 21004618 21004771 -100252759 + MER5A1 DNA MER1_type 1 166 0 3 745 232 262 11 56 chr12 21004845 21004934 -100252596 - MER5B DNA MER1_type -62 116 32 4 745 424 281 94 20 chr12 21005336 21005515 -100252015 - B3A SINE B2 -4 191 3 5 745 194 0 39 0 chr12 21005793 21005819 -100251711 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 745 985 123 0 0 chr12 21005845 21005983 -100251547 - B1_Mm SINE Alu -9 138 1 7 745 867 178 173 0 chr12 21006035 21006260 -100251270 + Lx9 LINE L1 7381 7644 0 8 745 729 255 66 24 chr12 21006588 21006801 -100250729 - ID_B1 SINE B4 -2 222 1 9 745 254 292 133 11 chr12 21007113 21007203 -100250327 + Lx8 LINE L1 6978 7078 -395 1 745 244 175 32 0 chr12 21007305 21007368 -100250162 + GA-rich Low_complexity Low_complexity 3 67 0 1 745 237 262 121 16 chr12 21007387 21007511 -100250019 + Lx8 LINE L1 7335 7471 -2 1 745 198 100 0 104 chr12 21007583 21007650 -100249880 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 1 745 388 312 43 109 chr12 21007689 21008099 -100249431 + MT2A LTR ERVL 74 601 0 1 745 4902 116 60 50 chr12 21008507 21009015 -100248515 - RMER17D LTR ERVK -2 887 395 1 745 816 65 0 0 chr12 21009015 21009122 -100248408 + (GGAGA)n Simple_repeat Simple_repeat 2 108 0 1 745 4902 116 60 50 chr12 21009122 21009491 -100248039 - RMER17D LTR ERVK -495 394 1 1 745 470 261 10 96 chr12 21010052 21010260 -100247270 - L1_Mur3 LINE L1 -4044 1836 1647 1 745 454 273 88 0 chr12 21010276 21010503 -100247027 - L1_Mur3 LINE L1 -4317 1560 1314 1 745 475 254 39 48 chr12 21010800 21011031 -100246499 - L1_Mur3 LINE L1 -6622 1106 878 1 745 2922 47 9 83 chr12 21011189 21011610 -100245920 - RLTR10 LTR ERVK 0 390 1 1 745 8901 23 2 0 chr12 21011612 21012605 -100244925 - RLTR10-int LTR ERVK -3 1984 990 1 745 8240 36 1 0 chr12 21012681 21013628 -100243902 - RLTR10-int LTR ERVK -999 988 41 1 745 2719 49 9 88 chr12 21013638 21014061 -100243469 - RLTR10 LTR ERVK 0 390 1 1 745 386 355 41 95 chr12 21015038 21015281 -100242249 + ORR1D-int LTR MaLR 132 361 -1219 1 745 952 110 0 27 chr12 21015331 21015480 -100242050 - B1_Mus2 SINE Alu 0 147 3 1 745 5822 236 36 7 chr12 21015490 21016868 -100240662 - Lx4B LINE L1 -4 7054 5637 2 745 1549 324 35 62 chr12 21016878 21017599 -100239931 + ORR1D-int LTR MaLR 562 1262 -108 1 745 235 274 18 45 chr12 21017699 21017810 -100239720 - Lx4B LINE L1 -4 7054 6947 2 745 231 347 81 62 chr12 21017937 21018146 -100239384 - B3 SINE B2 0 216 4 2 745 707 197 14 0 chr12 21018241 21018388 -100239142 + MurSatRep1 Unknown Unknown 2 150 -1987 2 745 333 314 65 0 chr12 21018390 21018514 -100239016 - B1_Mur2 SINE Alu -17 132 1 2 745 4042 169 27 27 chr12 21018517 21019326 -100238204 + MurSatRep1 Unknown Unknown 287 1095 -1042 2 745 23 54 0 0 chr12 21019345 21019382 -100238148 + AT_rich Low_complexity Low_complexity 1 37 0 2 745 1419 70 27 5 chr12 21019382 21019570 -100237960 + B2_Mm1a SINE B2 1 192 -1 2 745 1390 73 6 0 chr12 21019680 21019857 -100237673 - B2_Mm1a SINE B2 -14 179 2 2 745 4148 207 39 27 chr12 21019857 21020861 -100236669 + MurSatRep1 Unknown Unknown 1120 2135 -2 2 745 451 299 60 42 chr12 21020902 21021283 -100236247 + MurSatRep1 Unknown Unknown 1750 2137 0 2 745 515 283 7 7 chr12 21021058 21021365 -100236165 + MMSAT4 Satellite Satellite 1 307 0 2 745 543 310 43 38 chr12 21021319 21021982 -100235548 + MurSatRep1 Unknown Unknown 1747 2090 -47 3 745 554 293 3 3 chr12 21021982 21022289 -100235241 + MMSAT4 Satellite Satellite 1 307 0 3 745 543 310 43 38 chr12 21022289 21022378 -100235152 + MurSatRep1 Unknown Unknown 2091 2137 0 3 745 343 263 58 38 chr12 21022318 21022536 -100234994 + MMSAT4 Satellite Satellite 1 222 -12 3 745 3130 79 0 2 chr12 21022586 21022992 -100234538 + L1_Mus1 LINE L1 6163 6567 0 3 745 246 309 74 55 chr12 21022995 21023015 -100234515 + MurSatRep1 Unknown Unknown 1820 1852 -285 3 745 376 298 0 0 chr12 21023015 21023139 -100234391 + MMSAT4 Satellite Satellite 45 168 0 3 745 246 309 74 55 chr12 21023139 21023306 -100234224 + MurSatRep1 Unknown Unknown 1853 2136 -1 3 745 325 269 0 0 chr12 21023518 21023596 -100233934 + ORR1C2 LTR MaLR 293 370 -14 3 745 866 129 15 0 chr12 21023934 21024066 -100233464 + B1_Mus1 SINE Alu 2 135 -13 3 745 1895 252 63 38 chr12 21024337 21024643 -100232887 - L1_Mur3 LINE L1 -3798 2082 1774 3 745 418 17 0 33 chr12 21024643 21024704 -100232826 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 3 745 1218 22 0 0 chr12 21024704 21024840 -100232690 - B1_Mm SINE Alu -10 137 2 4 745 1895 250 53 30 chr12 21024840 21025425 -100232105 - L1_Mur3 LINE L1 -4107 1773 1165 3 745 438 266 54 19 chr12 21025429 21025644 -100231886 - L1_Mur3 LINE L1 -6507 1221 1002 3 745 315 0 0 0 chr12 21026203 21026238 -100231292 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 745 183 42 0 0 chr12 21026239 21026263 -100231267 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 745 21 0 0 0 chr12 21026281 21026302 -100231228 + AT_rich Low_complexity Low_complexity 1 21 0 4 745 540 231 78 11 chr12 21026313 21026483 -100231047 - Lx2B LINE L1 -212 6796 6623 4 745 183 146 0 0 chr12 21026572 21026613 -100230917 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 745 431 194 23 0 chr12 21026625 21026782 -100230748 + (TA)n Simple_repeat Simple_repeat 2 162 0 4 745 3364 18 39 0 chr12 21026782 21027163 -100230367 + MTA_Mm LTR MaLR 1 396 0 4 745 431 194 23 0 chr12 21027163 21027180 -100230350 + (TA)n Simple_repeat Simple_repeat 1 17 0 4 745 195 100 0 0 chr12 21027186 21027216 -100230314 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 4 745 205 211 18 0 chr12 21027278 21027335 -100230195 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 4 745 653 219 52 9 chr12 21027347 21027521 -100230009 - Lx2B LINE L1 -171 6805 6625 5 745 287 218 26 0 chr12 21027563 21027641 -100229889 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 5 745 356 190 12 12 chr12 21027647 21027807 -100229723 + (TA)n Simple_repeat Simple_repeat 1 160 0 5 745 711 312 40 97 chr12 21028008 21028218 -100229312 + RLTR11A2 LTR ERVK 134 333 -194 5 745 1205 42 0 0 chr12 21028218 21028360 -100229170 + B1_Mm SINE Alu 1 142 -5 5 745 711 312 40 97 chr12 21028360 21028500 -100229030 + RLTR11A2 LTR ERVK 334 464 -63 5 745 312 287 103 56 chr12 21028513 21028727 -100228803 - L1MEc LINE L1 -4110 2290 2067 5 745 482 202 17 6 chr12 21028898 21029072 -100228458 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 745 182 174 22 0 chr12 21029091 21029137 -100228393 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 745 480 173 34 23 chr12 21029148 21029325 -100228205 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 745 377 190 265 8 chr12 21029958 21030075 -100227455 + L1MC1 LINE L1 6187 6333 0 5 745 2354 88 41 3 chr12 21030085 21030426 -100227104 + L1_Mus3 LINE L1 6279 6632 -6 5 745 690 281 29 0 chr12 21030434 21030605 -100226925 + B3A SINE B2 1 176 -22 5 745 248 285 118 31 chr12 21031053 21031180 -100226350 + MIRb SINE MIR 65 202 -66 6 745 243 254 0 17 chr12 21031790 21031850 -100225680 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 745 718 274 9 65 chr12 21033959 21034174 -100223356 + B4A SINE B4 24 226 -66 6 745 446 317 55 0 chr12 21034186 21034350 -100223180 + B3A SINE B2 2 174 -24 6 745 913 146 0 0 chr12 21034392 21034529 -100223001 + B1_Mur4 SINE Alu 1 137 -13 6 745 2359 87 0 69 chr12 21034637 21034984 -100222546 + ORR1A2 LTR MaLR 1 323 -4 6 745 219 218 0 0 chr12 21034995 21035050 -100222480 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 745 529 256 37 31 chr12 21035746 21035907 -100221623 - RSINE1 SINE B4 -3 162 1 6 745 224 56 54 36 chr12 21035931 21035987 -100221543 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 6 745 309 289 54 15 chr12 21036433 21036563 -100220967 - MER33 DNA MER1_type 0 324 190 6 745 1175 174 23 5 chr12 21036615 21036835 -100220695 - URR1B DNA MER1_type -1 224 1 7 745 339 145 0 0 chr12 21037048 21037117 -100220413 + (GGA)n Simple_repeat Simple_repeat 1 69 0 7 745 227 331 124 16 chr12 21038883 21039012 -100218518 - MLT1J1 LTR MaLR -19 425 283 7 745 423 68 0 0 chr12 21039441 21039500 -100218030 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 745 3770 198 29 44 chr12 21040013 21040871 -100216659 + RLTR13A LTR ERVK 11 855 0 7 745 463 179 9 9 chr12 21041327 21041434 -100216096 + CT-rich Low_complexity Low_complexity 2 108 0 7 745 477 192 34 13 chr12 21042147 21042266 -100215264 - B1_Mur4 SINE Alu -2 118 9 7 745 302 260 183 94 chr12 21042150 21042341 -100215189 - ID_B1 SINE B4 0 224 17 7 745 590 205 138 51 chr12 21042444 21042639 -100214891 + B3 SINE B2 5 216 0 7 745 835 113 0 0 chr12 21042716 21042840 -100214690 + B1_Mm SINE Alu 24 147 0 7 745 389 236 52 96 chr12 21042718 21042854 -100214676 + B4 SINE B4 111 240 -52 8 745 327 258 68 30 chr12 21042842 21042960 -100214570 + ID_B1 SINE B4 73 197 -27 8 745 2486 101 8 48 chr12 21042960 21043334 -100214196 + RLTR10D LTR ERVK 1 359 0 8 745 327 258 68 30 chr12 21043334 21043347 -100214183 + ID_B1 SINE B4 198 209 -15 8 745 8766 52 1 1 chr12 21043347 21044390 -100213140 + IAP-d-int LTR ERVK 14 1056 -5486 8 745 13395 51 0 1 chr12 21044389 21045962 -100211568 + IAP-d-int LTR ERVK 4971 6542 0 8 745 2405 98 0 37 chr12 21045962 21046311 -100211219 + RLTR10D LTR ERVK 1 336 -23 8 745 336 64 0 0 chr12 21046545 21046592 -100210938 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 745 270 106 0 0 chr12 21046602 21046649 -100210881 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 745 625 179 47 31 chr12 21046659 21046786 -100210744 - B1_Mur3 SINE Alu -12 137 9 8 745 698 208 8 0 chr12 21046818 21046943 -100210587 - ID_B1 SINE B4 -7 217 92 8 745 1214 170 13 18 chr12 21048445 21048672 -100208858 + URR1A DNA MER1_type 1 226 0 8 745 735 256 50 25 chr12 21049490 21049690 -100207840 + B4A SINE B4 2 206 -86 8 745 660 264 0 0 chr12 21049918 21050047 -100207483 + RSINE1 SINE B4 3 131 -34 9 745 264 310 0 30 chr12 21050169 21050259 -100207271 - MER2B DNA MER2_type -244 92 8 9 745 247 267 0 43 chr12 21050702 21050796 -100206734 + G-rich Low_complexity Low_complexity 5 94 0 9 745 232 304 78 26 chr12 21050894 21051009 -100206521 + MIRb SINE MIR 23 143 -125 9 745 2268 159 11 102 chr12 21051011 21051328 -100206202 - MTC LTR MaLR 0 421 113 9 745 710 184 49 21 chr12 21051328 21051472 -100206058 + B1_Mur3 SINE Alu 2 149 0 9 745 2268 159 11 102 chr12 21051472 21051503 -100206027 - MTC LTR MaLR -309 112 112 9 745 369 0 0 0 chr12 21051503 21051544 -100205986 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 745 459 0 0 0 chr12 21051544 21051594 -100205936 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 745 2268 159 11 102 chr12 21051594 21051706 -100205824 - MTC LTR MaLR -309 112 2 9 745 258 196 0 19 chr12 21052799 21052851 -100204679 + MTE2a LTR MaLR 2 52 -327 9 745 843 201 99 11 chr12 21052898 21053089 -100204441 - B3 SINE B2 -6 210 3 1 745 944 152 14 0 chr12 21053119 21053264 -100204266 - B1_Mus1 SINE Alu -1 147 1 1 745 1331 179 0 4 chr12 21053295 21053520 -100204010 + URR1B DNA MER1_type 1 224 -1 1 745 665 224 145 86 chr12 21053520 21053826 -100203704 + MTE2a LTR MaLR 43 373 -6 9 745 267 318 21 54 chr12 21053926 21054019 -100203511 + RSINE1 SINE B4 34 123 -42 1 745 2751 105 5 7 chr12 21055337 21055741 -100201789 - RLTR9E LTR ERVK -6 403 1 1 745 546 80 13 0 chr12 21055741 21055816 -100201714 - ETnERV2-int LTR ERVK 0 7406 7331 1 745 16804 187 39 32 chr12 21056029 21059950 -100197580 - ETnERV2-int LTR ERVK -980 6426 1704 1 745 3743 213 40 30 chr12 21059965 21060835 -100196695 - ETnERV2-int LTR ERVK -2434 880 2 1 745 1479 111 24 3 chr12 21060842 21061185 -100196345 - RLTR9E LTR ERVK -5 404 1 1 745 470 183 20 61 chr12 21061248 21061262 -100196268 - B3A SINE B2 -101 97 89 1 745 405 0 0 0 chr12 21061262 21061307 -100196223 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 745 615 95 0 0 chr12 21061307 21061391 -100196139 - B2_Mm2 SINE B2 -109 86 3 1 745 229 280 0 0 chr12 21061478 21061528 -100196002 + PB1D10 SINE Alu 45 94 -23 1 745 407 264 11 0 chr12 21061529 21061620 -100195910 + RSINE1 SINE B4 42 133 -32 1 745 485 225 58 58 chr12 21061605 21061742 -100195788 + B1F1 SINE Alu 13 149 0 1 745 589 215 80 128 chr12 21061776 21061963 -100195567 + B3 SINE B2 18 195 0 1 745 801 234 33 34 chr12 21062473 21062690 -100194840 - B3A SINE B2 -6 210 3 1 745 238 299 93 52 chr12 21062693 21062887 -100194643 + L2c LINE L2 2963 3164 -223 1 745 315 321 28 0 chr12 21063074 21063183 -100194347 + PB1D7 SINE Alu 3 114 -6 1 745 319 325 8 41 chr12 21063190 21063312 -100194218 - MIRb SINE MIR -149 119 2 1 745 358 327 93 50 chr12 21064241 21064499 -100193031 + L1MD2 LINE L1 6084 6352 -7 1 745 714 318 29 55 chr12 21064513 21064786 -100192744 + B4A SINE B4 2 267 -25 1 745 212 266 11 132 chr12 21065011 21065102 -100192428 + MIRc SINE MIR 80 159 -109 1 745 321 242 3 32 chr12 21065503 21065603 -100191927 - MT2A LTR ERVL -496 105 9 1 745 877 257 18 29 chr12 21066098 21066391 -100191139 - MTE2a LTR MaLR 0 379 35 1 745 856 168 158 0 chr12 21066391 21066581 -100190949 + URR1A DNA MER1_type 1 220 -6 1 745 844 84 3 54 chr12 21067438 21067755 -100189775 + (GGGGA)n Simple_repeat Simple_repeat 1 300 0 1 745 656 194 39 0 chr12 21068095 21068224 -100189306 + B1_Mus1 SINE Alu 3 136 -12 1 745 531 0 0 0 chr12 21068224 21068283 -100189247 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1 745 259 260 35 146 chr12 21068401 21068545 -100188985 + MLT1F2 LTR MaLR 207 334 -226 1 745 770 233 83 0 chr12 21068768 21068961 -100188569 + B3 SINE B2 3 211 -5 1 745 455 188 157 33 chr12 21068985 21069106 -100188424 + B1_Mur2 SINE Alu 1 136 -13 1 745 391 35 35 0 chr12 21069111 21069168 -100188362 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 745 1189 41 0 39 chr12 21070413 21070566 -100186964 - B1_Mm SINE Alu 0 147 1 1 745 741 279 9 61 chr12 21071795 21072009 -100185521 + ID_B1 SINE B4 8 210 -14 1 745 186 43 0 0 chr12 21072013 21072036 -100185494 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 745 1054 101 0 0 chr12 21072059 21072197 -100185333 + B1_Mus1 SINE Alu 1 138 -10 1 745 270 0 0 0 chr12 21072269 21072299 -100185231 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 745 2485 58 0 3 chr12 21072299 21072611 -100184919 + L1Md_F3 LINE L1 6260 6570 -14 1 745 383 278 0 0 chr12 21072631 21072721 -100184809 - L1MD LINE L1 -556 5686 5597 1 745 36663 40 2 7 chr12 21072750 21077954 -100179576 + L1Md_F2 LINE L1 413 5586 -297 1 745 8273 43 1 1 chr12 21077954 21078936 -100178594 + L1Md_F2 LINE L1 5587 6568 -14 1 745 371 301 177 0 chr12 21078980 21079093 -100178437 - RSINE1 SINE B4 -29 136 4 1 745 809 102 34 0 chr12 21079100 21079218 -100178312 + RMER17D2 LTR ERVK 1 122 -687 1 745 854 113 0 0 chr12 21079221 21079354 -100178176 + RMER17D2 LTR ERVK 673 805 -4 1 745 3519 85 33 37 chr12 21079354 21079868 -100177662 + RLTR1B LTR ERV1 1 512 0 1 745 231 276 0 147 chr12 21079946 21080048 -100177482 - RMER21B LTR ERV1 -285 557 471 1 745 1453 185 166 140 chr12 21079968 21080429 -100177101 - MT2A LTR ERVL -71 462 1 1 745 504 280 14 0 chr12 21080430 21080573 -100176957 - L1MD LINE L1 -676 5566 5422 1 745 788 198 21 48 chr12 21080590 21080776 -100176754 + B3A SINE B2 1 181 -17 1 745 509 194 120 0 chr12 21080777 21080885 -100176645 - B3 SINE B2 -94 122 2 1 745 205 198 24 47 chr12 21080891 21080976 -100176554 + (TTTG)n Simple_repeat Simple_repeat 3 85 0 1 745 824 162 0 114 chr12 21080979 21081146 -100176384 - B1_Mus1 SINE Alu 0 148 1 1 745 1713 226 35 46 chr12 21081497 21081726 -100175804 - MTD LTR MaLR -14 405 190 1 745 819 246 43 10 chr12 21081726 21081935 -100175595 - B3 SINE B2 0 216 1 1 745 1713 226 37 42 chr12 21081935 21082126 -100175404 - MTD LTR MaLR -230 189 2 1 745 5978 78 26 6 chr12 21082245 21083037 -100174493 - RLTR13C2 LTR ERVK 0 808 1 1 745 1124 48 7 27 chr12 21083911 21083925 -100173605 - B1_Mm SINE Alu 0 147 136 1 745 225 0 0 0 chr12 21083925 21083950 -100173580 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 745 1124 48 7 27 chr12 21083950 21084084 -100173446 - B1_Mm SINE Alu -12 135 2 1 745 436 194 71 0 chr12 21084084 21084182 -100173348 - MTD-int LTR MaLR -1151 107 3 1 745 1042 221 228 9 chr12 21084190 21084532 -100172998 - MTD LTR MaLR 0 419 3 1 745 4321 239 43 55 chr12 21084590 21085764 -100171766 + MTD-int LTR MaLR 96 1256 -2 1 745 1724 206 82 0 chr12 21085774 21086139 -100171391 + MTD LTR MaLR 25 419 0 1 745 879 229 15 15 chr12 21086677 21086881 -100170649 - B3 SINE B2 -11 205 2 1 745 757 142 172 137 chr12 21087280 21087360 -100170170 + URR1A DNA MER1_type 1 112 -114 1 745 1106 75 7 0 chr12 21087360 21087506 -100170024 + B1_Mm SINE Alu 1 147 0 1 745 757 142 172 137 chr12 21087506 21087629 -100169901 + URR1A DNA MER1_type 113 211 -15 1 745 373 264 11 11 chr12 21088100 21088192 -100169338 - PB1D10 SINE Alu -13 104 13 1 745 517 277 0 45 chr12 21088393 21088548 -100168982 - B1F SINE Alu 0 149 2 1 745 1335 206 161 6 chr12 21088575 21088898 -100168632 - ORR1D1 LTR MaLR -1 373 1 1 745 186 158 94 109 chr12 21088908 21088972 -100168558 - L3 LINE CR1 -3563 926 864 1 745 1297 77 0 12 chr12 21089121 21089134 -100168396 - B2_Mm1t SINE B2 -23 170 159 1 745 401 0 20 0 chr12 21089134 21089183 -100168347 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1 745 1297 77 0 12 chr12 21089183 21089341 -100168189 - B2_Mm1t SINE B2 -35 158 1 1 745 267 288 53 26 chr12 21089487 21089601 -100167929 - L2c LINE L2 -53 3334 3218 1 745 1948 156 57 54 chr12 21090150 21090311 -100167219 - MTC LTR MaLR -33 388 236 1 745 1228 122 5 26 chr12 21090311 21090504 -100167026 + B2_Mm1a SINE B2 3 191 -2 1 745 1948 156 57 54 chr12 21090504 21090729 -100166801 - MTC LTR MaLR -186 235 1 1 745 198 0 0 0 chr12 21090785 21090807 -100166723 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 745 444 62 0 0 chr12 21090807 21090871 -100166659 + (TGG)n Simple_repeat Simple_repeat 1 64 0 1 745 1142 54 0 45 chr12 21091307 21091462 -100166068 - B1_Mus1 SINE Alu 0 148 1 1 745 188 245 38 0 chr12 21092167 21092220 -100165310 - MIRc SINE MIR -129 139 85 1 745 665 169 204 90 chr12 21092273 21092474 -100165056 + URR1B DNA MER1_type 2 225 0 1 745 1088 196 29 0 chr12 21092512 21092721 -100164809 - B3 SINE B2 0 216 2 1 745 260 294 0 61 chr12 21093668 21093766 -100163764 + MLT1K LTR MaLR 504 595 0 1 745 1493 273 8 32 chr12 21096003 21096036 -100161494 + ORR1D2 LTR MaLR 1 33 -337 1 745 1195 148 76 9 chr12 21096036 21096247 -100161283 - URR1B DNA MER1_type 0 225 1 1 745 1493 273 8 32 chr12 21096247 21096588 -100160942 + ORR1D2 LTR MaLR 34 366 -4 1 745 246 315 70 35 chr12 21096762 21096877 -100160653 - RMER15 LTR ERVL -16 559 441 1 745 1696 253 42 5 chr12 21096877 21097278 -100160252 + MTD LTR MaLR 1 416 -3 1 745 639 0 0 0 chr12 21097924 21097995 -100159535 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 1 745 528 262 96 34 chr12 21098372 21098581 -100158949 - ID_B1 SINE B4 0 224 3 1 745 415 263 186 44 chr12 21099233 21099394 -100158136 + B3A SINE B2 8 195 -21 1 745 291 130 0 0 chr12 21099394 21099448 -100158082 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 745 413 263 186 44 chr12 21099448 21099469 -100158061 + B3 SINE B2 196 216 0 1 745 593 186 10 10 chr12 21099480 21099583 -100157947 + B1_Mur2 SINE Alu 7 109 -40 1 745 502 289 18 0 chr12 21099790 21099904 -100157626 + RSINE1 SINE B4 3 118 -47 1 745 1634 36 0 5 chr12 21099905 21100098 -100157432 + B2_Mm1a SINE B2 1 192 -1 1 745 24 53 0 0 chr12 21100173 21100211 -100157319 + AT_rich Low_complexity Low_complexity 1 38 0 1 745 341 225 14 14 chr12 21100773 21100845 -100156685 + ID2 SINE ID 2 73 -10 1 745 570 15 0 0 chr12 21101062 21101129 -100156401 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 745 215 302 122 44 chr12 21101169 21101259 -100156271 - L2b LINE L2 -51 3324 3228 1 745 407 298 214 50 chr12 21101267 21101585 -100155945 - ORR1E LTR MaLR 0 370 1 1 745 1011 157 0 0 chr12 21101820 21101967 -100155563 - B1_Mur1 SINE Alu 0 149 3 1 745 379 263 82 31 chr12 21102054 21102152 -100155378 + RSINE1 SINE B4 50 152 -13 1 745 1405 99 16 0 chr12 21102224 21102416 -100155114 + B2_Mm2 SINE B2 1 195 0 1 93 211 322 92 49 chr12 21102478 21102641 -100154889 - L2b LINE L2 -459 2960 2791 1 746 2246 155 21 45 chr12 21103045 21103470 -100154060 - MTC LTR MaLR -6 415 1 1 746 563 270 71 0 chr12 21104489 21104615 -100152915 - RSINE1 SINE B4 -10 155 21 1 746 223 279 74 25 chr12 21104914 21104988 -100152542 + B4A SINE B4 3 80 -212 1 746 406 89 0 0 chr12 21104988 21105044 -100152486 + RMER6D LTR ERVK 1 56 -664 1 746 380 239 12 85 chr12 21105285 21105432 -100152098 + B3 SINE B2 65 193 0 1 746 234 128 26 0 chr12 21105521 21105560 -100151970 + MLT1C LTR MaLR 149 188 -279 1 746 580 265 0 13 chr12 21105799 21105948 -100151582 - B1_Mm SINE Alu 0 147 1 1 746 518 54 14 0 chr12 21106128 21106202 -100151328 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1 746 1473 210 95 83 chr12 21106344 21106696 -100150834 + MTD LTR MaLR 16 376 -43 1 746 701 182 33 53 chr12 21106696 21106847 -100150683 - B1_Mus1 SINE Alu 0 148 1 2 746 1473 210 95 83 chr12 21106847 21106893 -100150637 + MTD LTR MaLR 377 419 0 1 746 290 139 0 0 chr12 21107111 21107154 -100150376 + MTC LTR MaLR 92 134 -287 2 746 472 56 14 14 chr12 21107680 21107753 -100149777 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 746 687 272 92 42 chr12 21107782 21108020 -100149510 - B4A SINE B4 -38 254 5 2 746 1230 115 6 6 chr12 21108526 21108709 -100148821 + B2_Mm1a SINE B2 1 183 -10 2 746 482 194 37 0 chr12 21108944 21109052 -100148478 - Lx3B LINE L1 0 6973 6862 2 746 1178 49 7 0 chr12 21109592 21109734 -100147796 + B1_Mm SINE Alu 5 147 0 2 746 408 248 85 28 chr12 21110368 21110509 -100147021 - B1F SINE Alu 0 149 1 2 746 1342 306 83 112 chr12 21110887 21111601 -100145929 - MER63C DNA AcHobo -5 925 233 2 746 811 185 20 7 chr12 21111863 21112010 -100145520 + B1_Mur1 SINE Alu 1 149 0 2 746 741 203 61 25 chr12 21112186 21112351 -100145179 + B3 SINE B2 45 212 -4 2 746 246 242 0 0 chr12 21112359 21112425 -100145105 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 746 534 222 0 29 chr12 21112472 21112574 -100144956 + B3 SINE B2 1 99 -117 2 746 1056 97 7 0 chr12 21112574 21112718 -100144812 + B1_Mus1 SINE Alu 2 146 -2 2 746 379 175 16 0 chr12 21112744 21112807 -100144723 + B3 SINE B2 89 152 -64 2 746 547 232 9 0 chr12 21113696 21113808 -100143722 - PB1D9 SINE Alu -6 114 2 2 746 1059 99 0 0 chr12 21113858 21113995 -100143535 + B1_Mus2 SINE Alu 2 138 -9 2 746 206 0 69 0 chr12 21113995 21114024 -100143506 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 746 1452 223 100 8 chr12 21114421 21114801 -100142729 - MTD LTR MaLR 0 419 5 2 746 534 333 38 12 chr12 21115029 21115269 -100142261 - MER46C DNA MER2_type -1 337 92 2 746 745 204 0 21 chr12 21115287 21115432 -100142098 - B1_Mur3 SINE Alu -6 143 2 2 746 355 259 12 0 chr12 21115552 21115633 -100141897 + ID2 SINE ID 2 83 0 2 746 307 224 12 62 chr12 21115652 21115733 -100141797 - HAL1-3A_ME LINE L1 -806 2052 1976 2 746 804 156 0 0 chr12 21115762 21115942 -100141588 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 746 190 269 0 37 chr12 21120477 21120531 -100136999 - MIRm SINE MIR -115 161 110 2 746 318 67 0 0 chr12 21120893 21120938 -100136592 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 746 303 268 0 40 chr12 21120999 21121100 -100136430 - B4A SINE B4 -195 97 1 2 746 263 370 16 32 chr12 21122509 21122632 -100134898 - MER3 DNA MER1_type -78 131 11 2 746 351 294 32 83 chr12 21122641 21122797 -100134733 + MER5A1 DNA MER1_type 19 166 0 2 746 228 229 22 67 chr12 21122871 21122960 -100134570 - MER5B DNA MER1_type -62 116 32 2 746 226 221 195 0 chr12 21123872 21123949 -100133581 - PB1D10 SINE Alu 0 117 26 2 746 619 319 98 32 chr12 21123984 21124360 -100133170 - Charlie4a DNA MER1_type -96 412 12 2 746 182 226 55 36 chr12 21125013 21125068 -100132462 - MIRc SINE MIR -176 92 37 2 746 628 278 88 37 chr12 21125073 21125346 -100132184 - B4A SINE B4 -1 291 5 2 746 803 197 131 13 chr12 21125905 21126141 -100131389 + Lx9 LINE L1 7381 7644 0 2 746 828 217 79 33 chr12 21126468 21126682 -100130848 - ID_B1 SINE B4 0 224 1 2 746 643 247 35 45 chr12 21127451 21127650 -100129880 - B3A SINE B2 0 198 2 2 746 197 301 162 14 chr12 21127784 21127932 -100129598 + MIR3 SINE MIR 35 204 -4 2 746 249 322 104 32 chr12 21128148 21128273 -100129257 + B1F2 SINE Alu 4 137 -12 2 746 985 146 177 0 chr12 21128301 21128493 -100129037 - URR1A DNA MER1_type 0 226 1 2 746 1667 268 107 36 chr12 21128494 21129276 -100128254 - L1MB5 LINE L1 -44 6130 5293 2 746 236 260 19 111 chr12 21129277 21129385 -100128145 - MT-int LTR MaLR -353 745 648 2 746 23 0 0 0 chr12 21129389 21129412 -100128118 + AT_rich Low_complexity Low_complexity 1 23 0 2 746 654 236 73 94 chr12 21129412 21129569 -100127961 - B3A SINE B2 -9 189 35 2 746 926 251 235 6 chr12 21129569 21129910 -100127620 + MTD LTR MaLR 1 419 0 2 746 654 236 73 94 chr12 21129910 21129944 -100127586 - B3A SINE B2 -164 34 2 2 746 943 279 108 10 chr12 21130066 21130576 -100126954 - L1MB5 LINE L1 -1446 4700 4141 2 746 321 26 0 0 chr12 21130685 21130723 -100126807 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 746 366 279 66 78 chr12 21130723 21130788 -100126742 - RSINE1 SINE B4 -10 155 94 2 746 822 220 7 0 chr12 21130788 21130929 -100126601 + B1_Mur3 SINE Alu 2 143 -6 2 746 366 279 66 78 chr12 21130929 21131019 -100126511 - RSINE1 SINE B4 -72 93 1 2 746 229 257 57 121 chr12 21132066 21132190 -100125340 - MLT2B5 LTR ERVL -147 408 293 2 746 432 0 0 0 chr12 21133236 21133284 -100124246 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 746 481 224 200 0 chr12 21133290 21133415 -100124115 - B1_Mur4 SINE Alu 0 150 1 2 746 259 91 0 0 chr12 21134041 21134085 -100123445 - L1_Mus2 LINE L1 -3 6563 6520 2 746 260 104 0 40 chr12 21134334 21134384 -100123146 + (AGGGGG)n Simple_repeat Simple_repeat 6 53 0 2 746 237 65 0 0 chr12 21135896 21135927 -100121603 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 746 252 245 85 113 chr12 21135952 21136058 -100121472 + PB1D7 SINE Alu 18 120 0 2 746 219 69 0 0 chr12 21136884 21136913 -100120617 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 746 198 0 0 0 chr12 21138352 21138374 -100119156 + (CTG)n Simple_repeat Simple_repeat 3 24 0 2 746 249 308 164 41 chr12 21139690 21139812 -100117718 + L2a LINE L2 3277 3413 -13 2 746 230 191 43 0 chr12 21139822 21139869 -100117661 + B1F SINE Alu 10 58 -91 2 746 216 196 0 82 chr12 21139869 21139883 -100117647 + ID_B1 SINE B4 91 146 -78 2 746 282 298 37 88 chr12 21139995 21140026 -100117504 + MT2B LTR ERVL 129 152 -449 2 746 627 160 0 9 chr12 21140026 21140133 -100117397 + B1_Mur3 SINE Alu 1 106 -43 2 746 1114 77 123 12 chr12 21141017 21141187 -100116343 - B2_Mm1a SINE B2 -3 190 2 2 746 522 326 46 0 chr12 21142804 21142979 -100114551 + MER20 DNA MER1_type 37 219 0 2 746 234 299 13 13 chr12 21143037 21143115 -100114415 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 746 24 0 0 0 chr12 21143160 21143184 -100114346 + AT_rich Low_complexity Low_complexity 1 24 0 2 746 230 279 24 71 chr12 21143198 21143283 -100114247 - PB1D9 SINE Alu 0 120 40 2 746 440 250 20 0 chr12 21143286 21143386 -100114144 - B4A SINE B4 -186 106 5 2 746 27 0 0 0 chr12 21143631 21143658 -100113872 + AT_rich Low_complexity Low_complexity 1 27 0 2 746 336 83 0 0 chr12 21143903 21143951 -100113579 + (TCC)n Simple_repeat Simple_repeat 1 48 0 2 746 227 300 96 39 chr12 21143951 21144055 -100113475 - PB1D7 SINE Alu -9 111 2 2 746 465 242 93 16 chr12 21144064 21144239 -100113291 - B3A SINE B2 -7 209 1 2 746 184 163 36 109 chr12 21145218 21145273 -100112257 + MIR SINE MIR 83 133 -75 2 746 422 266 26 14 chr12 21146070 21146246 -100111284 - L1MD LINE L1 -2118 4028 3850 2 746 257 222 0 0 chr12 21146443 21146497 -100111033 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 746 916 41 205 0 chr12 21149507 21149629 -100107901 - B1_Mm SINE Alu 0 147 1 2 746 559 140 28 74 chr12 21149819 21149927 -100107603 + B1_Mur2 SINE Alu 2 104 -45 2 746 297 68 0 0 chr12 21150225 21150269 -100107261 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 2 746 1242 61 0 0 chr12 21150282 21150430 -100107100 - B1_Mus1 SINE Alu 0 148 1 2 746 866 212 85 5 chr12 21151397 21151596 -100105934 - B3 SINE B2 -1 215 1 2 746 669 326 84 24 chr12 21151687 21151938 -100105592 - B4A SINE B4 -26 266 1 2 746 355 198 108 24 chr12 21152857 21152940 -100104590 + Tigger15a DNA TcMar 9 98 -617 2 746 537 303 42 75 chr12 21153158 21153451 -100104079 + B4A SINE B4 1 274 -18 2 746 211 139 70 0 chr12 21154048 21154091 -100103439 - MIR SINE MIR -140 122 77 2 746 1013 194 114 0 chr12 21154509 21154710 -100102820 + URR1B DNA MER1_type 2 225 0 2 746 22 0 0 0 chr12 21155076 21155098 -100102432 + GC_rich Low_complexity Low_complexity 1 22 0 2 746 302 281 147 71 chr12 21155161 21155190 -100102340 - B3A SINE B2 0 198 179 2 746 201 74 0 0 chr12 21155190 21155217 -100102313 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 2 746 302 281 147 71 chr12 21155217 21155371 -100102159 - B3A SINE B2 -20 178 2 2 746 640 262 37 6 chr12 21155546 21155707 -100101823 - B3 SINE B2 -4 212 47 2 746 508 211 123 0 chr12 21155706 21155820 -100101710 - RSINE1 SINE B4 -35 130 3 2 746 273 313 104 39 chr12 21156495 21156774 -100100756 - L1ME1 LINE L1 -220 5959 5663 2 746 232 255 219 21 chr12 21156775 21156871 -100100659 - PB1D10 SINE Alu 0 117 3 2 746 267 313 78 0 chr12 21156981 21157096 -100100434 - L1ME1 LINE L1 -634 5528 5405 2 746 951 149 165 0 chr12 21157264 21157458 -100100072 - URR1A DNA MER1_type 0 226 1 2 746 896 239 53 10 chr12 21157611 21157818 -100099712 + B3 SINE B2 1 216 0 2 746 840 200 45 34 chr12 21158114 21158290 -100099240 + B3A SINE B2 5 182 -16 2 746 375 41 0 0 chr12 21158777 21158826 -100098704 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 746 222 0 79 0 chr12 21158862 21158900 -100098630 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 746 565 270 88 0 chr12 21160352 21160489 -100097041 - RSINE1 SINE B4 -14 151 3 2 746 745 237 102 10 chr12 21161388 21161584 -100095946 + B3 SINE B2 3 216 0 2 746 898 184 7 0 chr12 21161598 21161745 -100095785 - B1_Mur4 SINE Alu 0 150 3 2 746 284 158 11 3 chr12 21163150 21163203 -100094327 - B1_Mus1 SINE Alu -61 56 1 2 746 623 125 10 0 chr12 21164320 21164424 -100093106 + (TTC)n Simple_repeat Simple_repeat 1 105 0 3 746 186 43 0 0 chr12 21164422 21164445 -100093085 + (CAT)n Simple_repeat Simple_repeat 3 25 0 3 746 369 0 0 0 chr12 21166920 21166961 -100090569 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 746 233 57 0 28 chr12 21167032 21167068 -100090462 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 746 368 265 81 10 chr12 21167068 21167167 -100090363 - PB1D7 SINE Alu -13 107 2 3 746 283 253 0 78 chr12 21167097 21167187 -100090343 - B4A SINE B4 -137 155 73 3 746 369 0 0 0 chr12 21167191 21167232 -100090298 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 746 2252 82 62 0 chr12 21168502 21168808 -100088722 + ORR1A2 LTR MaLR 3 327 0 3 746 242 167 24 0 chr12 21168835 21168877 -100088653 - MER58D DNA MER1_type -1 385 343 3 746 2722 46 61 0 chr12 21170789 21171115 -100086415 - ORR1A1 LTR MaLR 0 346 1 3 746 257 281 47 35 chr12 21171343 21171428 -100086102 + L2a LINE L2 3332 3417 -9 3 746 465 243 64 111 chr12 21172355 21172526 -100085004 + B4 SINE B4 1 163 -129 3 746 290 87 22 0 chr12 21172617 21172663 -100084867 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 746 304 250 51 26 chr12 21172669 21172747 -100084783 + B4A SINE B4 75 154 -138 3 746 180 111 0 0 chr12 21173637 21173664 -100083866 + (CAGGG)n Simple_repeat Simple_repeat 5 31 0 3 746 692 228 22 0 chr12 21174581 21174717 -100082813 + ID_B1 SINE B4 86 224 0 3 746 296 322 194 40 chr12 21175352 21175630 -100081900 - MT2A LTR ERVL -106 427 107 3 746 282 265 147 47 chr12 21175559 21175729 -100081801 - MTEb LTR MaLR -192 187 1 3 746 24 0 0 0 chr12 21176282 21176306 -100081224 + AT_rich Low_complexity Low_complexity 1 24 0 3 746 270 0 0 0 chr12 21177273 21177303 -100080227 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 746 360 0 0 0 chr12 21177303 21177342 -100080188 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 746 280 296 179 43 chr12 21177372 21177556 -100079974 - MARNA DNA Mariner -76 510 302 3 746 328 308 31 82 chr12 21177989 21178148 -100079382 - MLT1A LTR MaLR -8 497 347 3 746 508 182 50 10 chr12 21178369 21178469 -100079061 - B1_Mur1 SINE Alu -5 144 41 3 746 468 290 115 6 chr12 21178515 21178671 -100078859 - MLT1A LTR MaLR -195 179 7 3 746 473 279 18 9 chr12 21178784 21178896 -100078634 - RSINE1 SINE B4 -45 120 8 3 746 1019 135 172 0 chr12 21179131 21179323 -100078207 + URR1B DNA MER1_type 1 225 0 3 746 228 86 0 0 chr12 21180069 21180104 -100077426 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 3 746 275 229 151 35 chr12 21180104 21180182 -100077348 - RSINE1 SINE B4 -12 153 66 3 746 22 0 0 0 chr12 21180209 21180231 -100077299 + AT_rich Low_complexity Low_complexity 1 22 0 3 746 785 149 22 29 chr12 21181127 21181265 -100076265 - B1_Mur4 SINE Alu -8 142 6 3 746 690 127 493 0 chr12 21181687 21181837 -100075693 + URR1B DNA MER1_type 2 225 0 3 746 235 364 11 85 chr12 21182726 21182746 -100074784 - B4A SINE B4 -46 246 186 3 746 573 238 0 37 chr12 21182746 21182881 -100074649 - B1F SINE Alu 0 149 20 3 746 235 364 11 85 chr12 21182881 21182915 -100074615 - B4A SINE B4 -46 185 72 3 746 852 239 151 38 chr12 21182942 21183181 -100074349 - B4A SINE B4 0 292 27 3 746 306 0 0 0 chr12 21183201 21183235 -100074295 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 746 865 111 0 20 chr12 21184066 21184213 -100073317 + (TTTC)n Simple_repeat Simple_repeat 4 147 0 3 746 982 101 1 21 chr12 21184226 21184375 -100073155 - B1_Mur4 SINE Alu 0 150 3 3 746 1012 188 19 34 chr12 21184400 21184609 -100072921 - B3 SINE B2 -7 209 4 3 746 547 213 124 16 chr12 21185069 21185198 -100072332 + B3A SINE B2 4 146 -52 3 746 189 0 0 0 chr12 21185201 21185222 -100072308 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 746 336 204 47 110 chr12 21185397 21185524 -100072006 - URR1B DNA MER1_type -37 188 70 3 746 317 295 87 20 chr12 21186183 21186349 -100071181 + MIR3 SINE MIR 7 177 -31 3 746 1057 70 7 14 chr12 21186891 21187035 -100070495 + B2_Mm1t SINE B2 37 179 -14 3 746 218 171 24 0 chr12 21187073 21187114 -100070416 + B4 SINE B4 41 82 -210 3 746 466 70 22 3 chr12 21187078 21187187 -100070343 + B2_Mm2 SINE B2 47 194 -1 3 746 22 0 0 0 chr12 21187192 21187214 -100070316 + AT_rich Low_complexity Low_complexity 1 22 0 3 746 738 102 0 0 chr12 21187941 21188068 -100069462 + (CA)n Simple_repeat Simple_repeat 2 128 0 3 746 468 365 0 25 chr12 21188597 21188760 -100068770 - RSINE1 SINE B4 -4 161 3 3 746 200 182 0 0 chr12 21189139 21189172 -100068358 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 746 218 226 75 0 chr12 21189232 21189285 -100068245 - ID4_ SINE ID -25 58 2 3 746 778 227 97 0 chr12 21189904 21190080 -100067450 - ID_B1 SINE B4 0 224 32 3 746 891 196 133 66 chr12 21191420 21191609 -100065921 - ORR1D1 LTR MaLR 0 374 169 3 746 426 20 0 0 chr12 21191609 21191660 -100065870 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 746 891 166 640 28 chr12 21191660 21191766 -100065764 - ORR1D1 LTR MaLR -206 168 1 3 746 375 23 0 0 chr12 21191973 21192017 -100065513 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 746 219 114 0 0 chr12 21192502 21192537 -100064993 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 746 534 190 34 25 chr12 21193069 21193188 -100064342 + PB1D9 SINE Alu 1 120 0 3 746 211 200 0 0 chr12 21193346 21193386 -100064144 - MIR SINE MIR -66 196 157 3 746 276 258 83 34 chr12 21195147 21195258 -100062272 - B1_Mur3 SINE Alu -30 119 8 3 746 268 330 8 83 chr12 21195628 21195760 -100061770 + RMER12 LTR ERVK 717 838 -484 3 746 186 43 0 0 chr12 21195994 21196017 -100061513 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 746 494 301 45 7 chr12 21196283 21196437 -100061093 + L2a LINE L2 3001 3160 -266 3 746 387 339 47 5 chr12 21196509 21196699 -100060831 + L1ME2 LINE L1 5711 5908 -256 3 746 2448 98 6 0 chr12 21197251 21197578 -100059952 - ORR1A4 LTR MaLR 0 329 1 3 746 551 230 84 73 chr12 21198569 21198747 -100058783 - B3A SINE B2 -17 181 2 3 746 1624 179 26 48 chr12 21199356 21199708 -100057822 - Lx5 LINE L1 0 7050 6707 3 746 459 0 0 0 chr12 21199854 21199905 -100057625 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 3 746 239 0 32 0 chr12 21199910 21199941 -100057589 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 3 746 899 236 10 49 chr12 21199946 21200151 -100057379 - ID_B1 SINE B4 -26 198 2 3 746 477 250 19 0 chr12 21200267 21200375 -100057155 - PB1D10 SINE Alu -2 115 6 3 746 234 311 86 19 chr12 21200283 21200388 -100057142 - B4 SINE B4 -101 191 80 3 746 315 0 0 0 chr12 21200493 21200528 -100057002 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 746 600 273 121 45 chr12 21200573 21200838 -100056692 - RMER20B LTR ERVK -232 395 111 3 746 2839 77 30 25 chr12 21201119 21201517 -100056013 - MTB LTR MaLR 0 400 1 3 746 1250 157 385 3 chr12 21202560 21202845 -100054685 - ORR1B1 LTR MaLR 0 394 1 3 746 611 312 6 36 chr12 21203002 21203168 -100054362 + RSINE1 SINE B4 3 163 -2 3 746 548 222 25 41 chr12 21203224 21203346 -100054184 - PB1D9 SINE Alu 0 120 1 3 746 1178 68 0 7 chr12 21203356 21203503 -100054027 - B1_Mus1 SINE Alu -2 146 1 3 746 243 0 0 0 chr12 21203874 21203901 -100053629 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 746 21 0 0 0 chr12 21203902 21203923 -100053607 + GC_rich Low_complexity Low_complexity 1 21 0 3 746 1127 244 110 68 chr12 21204419 21204971 -100052559 - RMER13A LTR ERVK -115 745 98 3 746 207 0 0 0 chr12 21206800 21206823 -100050707 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 746 1286 14 0 7 chr12 21206840 21206988 -100050542 + B1_Mm SINE Alu 1 147 0 3 746 23 0 0 0 chr12 21206988 21207011 -100050519 + AT_rich Low_complexity Low_complexity 1 23 0 3 746 392 241 250 69 chr12 21207283 21207515 -100050015 + B4 SINE B4 1 274 -18 3 746 1387 75 43 0 chr12 21208337 21208523 -100049007 - B2_Mm2 SINE B2 -1 194 1 3 746 183 80 0 0 chr12 21209305 21209330 -100048200 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 746 492 294 5 91 chr12 21210177 21210364 -100047166 + B3A SINE B2 15 185 -31 3 746 435 235 53 8 chr12 21210807 21210940 -100046590 - L1M5 LINE L1 -406 5718 5580 3 746 268 184 5 30 chr12 21211508 21211590 -100045940 + B1_Mur2 SINE Alu 42 149 0 3 746 790 303 5 41 chr12 21211855 21212075 -100045455 + ID_B1 SINE B4 7 218 -6 3 746 242 211 130 78 chr12 21212362 21212439 -100045091 + ID4_ SINE ID 3 83 0 3 746 646 241 47 157 chr12 21212470 21212706 -100044824 + ID_B1 SINE B4 1 210 -14 3 746 225 0 0 0 chr12 21212706 21212731 -100044799 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 3 746 360 312 119 19 chr12 21212735 21213055 -100044475 + L1MB8 LINE L1 5815 6166 -12 3 746 791 255 57 5 chr12 21213489 21213682 -100043848 + B3 SINE B2 3 205 -11 3 746 636 243 0 0 chr12 21216207 21216376 -100041154 + (TATG)n Simple_repeat Simple_repeat 2 170 0 3 746 342 0 0 0 chr12 21216565 21216603 -100040927 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 3 746 364 109 0 18 chr12 21216632 21216688 -100040842 - B2_Mm2 SINE B2 -94 101 47 3 746 1261 88 6 0 chr12 21216724 21216894 -100040636 - B2_Mm1t SINE B2 -22 171 1 3 746 285 275 25 12 chr12 21216945 21217026 -100040504 - RSINE1 SINE B4 0 165 84 3 746 619 239 137 39 chr12 21217218 21217423 -100040107 - MTEb LTR MaLR -8 371 147 4 746 4357 69 0 0 chr12 21217423 21218016 -100039514 + L1_Mm LINE L1 3173 3765 -2118 4 746 342 265 122 0 chr12 21218016 21218114 -100039416 - MTEb LTR MaLR -249 130 21 4 746 234 0 0 0 chr12 21218888 21218914 -100038616 + (CGTG)n Simple_repeat Simple_repeat 4 29 0 4 746 599 230 26 0 chr12 21219548 21219661 -100037869 + B1F SINE Alu 34 149 0 4 746 240 304 51 70 chr12 21219677 21219833 -100037697 + RSINE1 SINE B4 2 154 -11 4 746 344 209 30 0 chr12 21220022 21220089 -100037441 - PB1 SINE Alu -30 97 29 4 746 217 399 0 0 chr12 21220998 21221151 -100036379 + (CTCCG)n Simple_repeat Simple_repeat 2 154 0 4 746 202 277 176 0 chr12 21221077 21221196 -100036334 + (CCCCAG)n Simple_repeat Simple_repeat 2 141 0 4 746 1283 113 5 5 chr12 21221254 21221440 -100036090 - B2_Mm2 SINE B2 -7 188 3 4 746 1063 266 116 40 chr12 21221790 21222358 -100035172 + L1M4 LINE L1 4533 5143 -1003 4 746 25 0 0 0 chr12 21223721 21223746 -100033784 + AT_rich Low_complexity Low_complexity 1 25 0 4 746 7869 34 6 1 chr12 21224943 21225911 -100031619 - L1Md_T LINE L1 0 6582 5610 4 746 426 94 0 0 chr12 21227453 21227517 -100030013 + (TATG)n Simple_repeat Simple_repeat 2 65 0 4 746 746 252 14 0 chr12 21227517 21227656 -100029874 - B1_Mur1 SINE Alu -8 141 1 4 746 281 271 30 30 chr12 21227942 21228041 -100029489 + Charlie22a DNA MER1_type 59 157 -334 4 746 747 270 238 13 chr12 21228379 21228694 -100028836 + Lx8 LINE L1 7088 7473 0 4 746 793 114 28 77 chr12 21228866 21229009 -100028521 + B1_Mus1 SINE Alu 13 148 0 4 746 999 202 38 9 chr12 21229343 21229553 -100027977 - B3 SINE B2 0 216 1 4 746 378 263 0 0 chr12 21230340 21230416 -100027114 + PB1D10 SINE Alu 2 77 -40 4 746 523 255 0 18 chr12 21230658 21230770 -100026760 + RSINE1 SINE B4 2 111 -54 4 746 1203 101 0 0 chr12 21230770 21231031 -100026499 + (CA)n Simple_repeat Simple_repeat 1 261 0 4 746 228 154 0 0 chr12 21231705 21231744 -100025786 + B3A SINE B2 2 40 -158 4 746 226 312 30 30 chr12 21231744 21231771 -100025759 + ID2 SINE ID 2 67 -16 4 746 282 56 0 0 chr12 21231812 21231848 -100025682 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 746 189 0 0 0 chr12 21232088 21232109 -100025421 + (A)n Simple_repeat Simple_repeat 1 21 0 4 747 633 209 0 0 chr12 21233943 21234096 -100023434 + (TG)n Simple_repeat Simple_repeat 2 154 0 4 747 446 268 74 43 chr12 21234189 21234446 -100023084 - L1MC4a LINE L1 -201 7681 7417 4 747 498 217 28 9 chr12 21234672 21234779 -100022751 + PB1D9 SINE Alu 5 113 -7 4 747 208 224 0 20 chr12 21234937 21234987 -100022543 + (CACG)n Simple_repeat Simple_repeat 3 51 0 4 747 381 145 12 73 chr12 21235861 21235943 -100021587 - B3A SINE B2 -121 77 1 4 747 844 345 72 57 chr12 21238216 21238456 -100019074 - MER63B DNA AcHobo -17 419 174 4 747 526 212 43 34 chr12 21238456 21238573 -100018957 - PB1D7 SINE Alu -1 119 2 4 747 844 345 72 57 chr12 21238573 21238737 -100018793 - MER63B DNA AcHobo -263 173 9 4 747 571 231 21 69 chr12 21238772 21238916 -100018614 - B3A SINE B2 -61 137 1 4 747 201 154 0 0 chr12 21239532 21239571 -100017959 + T-rich Low_complexity Low_complexity 1 39 0 4 747 1141 75 0 7 chr12 21239571 21239719 -100017811 - B1_Mus2 SINE Alu 0 147 1 4 747 1058 177 50 10 chr12 21239933 21240133 -100017397 + URR1B DNA MER1_type 18 225 0 4 747 595 299 7 7 chr12 21240354 21240502 -100017028 + B1F SINE Alu 1 148 -1 4 747 212 329 44 114 chr12 21240362 21240520 -100017010 + B4A SINE B4 94 240 -52 4 747 540 0 0 0 chr12 21240829 21240889 -100016641 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 747 355 309 0 0 chr12 21241867 21241948 -100015582 - RSINE1 SINE B4 -2 163 83 4 747 186 43 0 0 chr12 21242187 21242210 -100015320 + (CCA)n Simple_repeat Simple_repeat 2 24 0 4 747 23 33 0 0 chr12 21242232 21242262 -100015268 + AT_rich Low_complexity Low_complexity 1 30 0 4 747 261 318 0 0 chr12 21242423 21242489 -100015041 + MER2 DNA MER2_type 1 66 -279 4 747 1084 190 50 0 chr12 21242496 21242696 -100014834 + B3 SINE B2 1 210 -6 4 747 414 0 0 0 chr12 21244090 21244136 -100013394 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 747 2097 245 213 35 chr12 21244137 21245076 -100012454 - RMER1A Other Other -36 994 1 4 747 1243 54 0 0 chr12 21246150 21246297 -100011233 + B1_Mm SINE Alu 1 147 0 4 747 4366 112 23 5 chr12 21246312 21246981 -100010549 - ORR1A3-int LTR MaLR -75 1888 963 4 747 588 248 25 0 chr12 21247458 21247579 -100009951 + B1F SINE Alu 4 127 -22 4 747 386 261 0 0 chr12 21248345 21248437 -100009093 + PB1D10 SINE Alu 26 117 0 4 747 671 279 100 0 chr12 21248461 21248651 -100008879 + B3 SINE B2 2 210 -6 4 747 818 51 246 0 chr12 21248674 21248792 -100008738 + B1_Mus1 SINE Alu 2 148 0 4 747 234 0 0 0 chr12 21248792 21248818 -100008712 + (A)n Simple_repeat Simple_repeat 1 26 0 4 747 243 208 137 14 chr12 21248822 21248895 -100008635 + ID4_ SINE ID 2 83 0 4 747 188 307 39 102 chr12 21249141 21249268 -100008262 + MIRm SINE MIR 92 210 -66 4 747 186 43 0 0 chr12 21250998 21251021 -100006509 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 747 245 309 167 36 chr12 21251202 21251370 -100006160 - L1MA8 LINE L1 -36 6255 6066 4 747 277 270 18 0 chr12 21251411 21251479 -100006051 - PB1D7 SINE Alu -45 72 3 4 747 827 220 69 20 chr12 21251533 21251737 -100005793 - B3 SINE B2 -1 215 2 4 747 1739 164 71 52 chr12 21252580 21252778 -100004752 - ORR1D1 LTR MaLR 0 374 182 4 747 249 83 0 0 chr12 21252778 21252814 -100004716 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 4 747 1739 164 71 52 chr12 21252814 21252982 -100004548 - ORR1D1 LTR MaLR -193 181 2 4 747 1046 252 14 5 chr12 21254407 21254614 -100002916 + B3 SINE B2 1 209 -7 4 747 352 251 122 65 chr12 21254746 21254768 -100002762 + CYRA11_Mm Unknown Y-chromosome 164 245 -372 4 747 969 158 39 22 chr12 21254768 21254949 -100002581 - URR1B DNA MER1_type -25 200 17 4 747 352 251 122 65 chr12 21254949 21254993 -100002537 + CYRA11_Mm Unknown Y-chromosome 246 424 -193 4 747 366 209 75 21 chr12 21255799 21255886 -100001644 + B1_Mur4 SINE Alu 44 137 -13 4 747 759 11 0 0 chr12 21255886 21255974 -100001556 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 4 747 839 37 9 0 chr12 21255974 21256080 -100001450 + (GAGAA)n Simple_repeat Simple_repeat 2 109 0 4 747 2580 125 28 13 chr12 21256380 21256768 -100000762 - ORR1B1 LTR MaLR 0 394 1 4 747 281 226 48 0 chr12 21256801 21256885 -100000645 + L1_Mur2 LINE L1 5290 5377 -500 4 747 403 205 28 0 chr12 21257727 21257807 -99999723 - MIRm SINE MIR -119 157 70 4 747 2026 131 35 13 chr12 21257921 21258238 -99999292 - ORR1A2 LTR MaLR -3 324 1 4 747 232 261 0 30 chr12 21259389 21259456 -99998074 - MER58A DNA MER1_type -113 111 47 4 747 433 234 56 0 chr12 21259480 21259587 -99997943 + RSINE1 SINE B4 53 165 0 4 747 417 20 0 0 chr12 21259849 21259899 -99997631 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 747 252 122 0 0 chr12 21262287 21262328 -99995202 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 747 525 198 57 0 chr12 21264750 21264856 -99992674 - B3 SINE B2 -20 196 85 4 747 1195 75 0 0 chr12 21264857 21265004 -99992526 + B1_Mus1 SINE Alu 1 147 -1 4 747 804 118 11 40 chr12 21265011 21265187 -99992343 + GA-rich Low_complexity Low_complexity 3 173 0 4 747 512 233 0 0 chr12 21265187 21265277 -99992253 - B3 SINE B2 -116 100 11 4 747 2466 85 0 0 chr12 21265369 21265688 -99991842 - ORR1A2 LTR MaLR -8 319 1 4 747 1016 62 47 0 chr12 21267066 21267194 -99990336 + B1_Mm SINE Alu 1 134 -13 4 747 251 357 58 135 chr12 21267484 21267863 -99989667 - ORR1E LTR MaLR -9 350 1 4 747 400 337 192 35 chr12 21267977 21268404 -99989126 - HAL1 LINE L1 -1923 584 91 4 747 198 132 18 36 chr12 21268458 21268513 -99989017 + CT-rich Low_complexity Low_complexity 6 59 0 4 747 243 274 0 40 chr12 21268531 21268607 -99988923 - ID4_ SINE ID -9 74 2 4 747 2188 148 39 0 chr12 21269438 21269796 -99987734 - ORR1D1 LTR MaLR -2 372 1 4 747 186 333 78 16 chr12 21272324 21272452 -99985078 + MIRc SINE MIR 3 138 -130 4 747 24 0 0 0 chr12 21273098 21273122 -99984408 + AT_rich Low_complexity Low_complexity 1 24 0 4 747 621 0 0 0 chr12 21275145 21275214 -99982316 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 747 225 0 0 0 chr12 21275354 21275379 -99982151 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 4 747 861 210 63 21 chr12 21276322 21276367 -99981163 - B3A SINE B2 0 198 155 4 747 243 88 0 0 chr12 21276367 21276401 -99981129 + (TATG)n Simple_repeat Simple_repeat 1 34 0 4 747 861 210 63 21 chr12 21276401 21276545 -99980985 - B3A SINE B2 -44 154 1 4 747 619 185 86 29 chr12 21278259 21278398 -99979132 + B1_Mm SINE Alu 1 147 0 4 747 1200 48 7 0 chr12 21279164 21279309 -99978221 + B1_Mus2 SINE Alu 2 147 0 4 747 421 207 0 24 chr12 21279320 21279404 -99978126 - B1_Mur2 SINE Alu -30 119 38 4 747 290 190 0 112 chr12 21279325 21279414 -99978116 - MT2B LTR ERVL -337 264 186 4 747 655 265 63 0 chr12 21279503 21279692 -99977838 - B3 SINE B2 -14 202 2 4 747 623 137 143 16 chr12 21279785 21279911 -99977619 + B1_Mus1 SINE Alu 6 147 -1 4 747 1226 41 7 0 chr12 21279913 21280060 -99977470 + B1_Mus1 SINE Alu 1 148 0 4 747 1132 106 0 11 chr12 21280065 21280246 -99977284 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4 747 223 152 60 15 chr12 21280821 21280888 -99976642 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 747 731 241 103 0 chr12 21280955 21281150 -99976380 - B3 SINE B2 0 216 2 5 747 459 250 39 0 chr12 21281158 21281262 -99976268 - PB1D9 SINE Alu -7 113 6 5 747 774 196 53 0 chr12 21281288 21281421 -99976109 - B1_Mur1 SINE Alu -7 142 3 5 747 1194 81 0 0 chr12 21281766 21281914 -99975616 + B1_Mus1 SINE Alu 1 148 0 5 747 186 133 0 0 chr12 21281914 21281944 -99975586 + (A)n Simple_repeat Simple_repeat 1 30 0 5 747 230 29 59 0 chr12 21281948 21281982 -99975548 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 747 1137 138 0 32 chr12 21282850 21283037 -99974493 - B2_Mm2 SINE B2 -13 182 2 5 747 409 308 109 64 chr12 21283703 21283859 -99973671 + B3A SINE B2 36 198 0 5 747 26 0 0 0 chr12 21283861 21283887 -99973643 + AT_rich Low_complexity Low_complexity 1 26 0 5 747 684 307 128 48 chr12 21284046 21284615 -99972915 + RLTR26 LTR ERVK 2 632 -10 5 747 526 278 8 8 chr12 21284639 21284766 -99972764 + RSINE1 SINE B4 3 129 -36 5 747 979 169 39 11 chr12 21284835 21285015 -99972515 + B2_Mm2 SINE B2 2 186 -9 5 747 367 214 31 138 chr12 21285393 21285523 -99972007 + MT2B LTR ERVL 149 264 -337 5 747 809 153 36 7 chr12 21285416 21285554 -99971976 + B1_Mur4 SINE Alu 9 150 0 5 747 361 123 4 17 chr12 21285569 21285650 -99971880 + B1_Mur3 SINE Alu 43 149 0 5 747 518 63 13 0 chr12 21285651 21285730 -99971800 + (GAAAA)n Simple_repeat Simple_repeat 2 81 0 5 747 227 262 0 15 chr12 21285858 21285924 -99971606 + ID4 SINE ID 5 69 -14 5 747 828 212 20 7 chr12 21285951 21286103 -99971427 + B3A SINE B2 3 156 -42 5 747 423 0 0 0 chr12 21286117 21286164 -99971366 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 747 417 231 130 0 chr12 21286178 21286286 -99971244 + B3 SINE B2 2 123 -93 5 747 1037 189 28 119 chr12 21286287 21286641 -99970889 + RLTRETN_Mm LTR ERVK 1 322 0 5 747 511 216 10 10 chr12 21286641 21286738 -99970792 + B3 SINE B2 119 215 -1 5 747 485 282 0 0 chr12 21287008 21287111 -99970419 - PB1D10 SINE Alu -11 106 4 5 747 296 340 29 0 chr12 21287019 21287122 -99970408 - ID_B1 SINE B4 -48 176 71 5 747 3715 165 78 22 chr12 21287254 21287975 -99969555 + RLTR25B LTR ERVK 13 773 -255 5 747 1233 41 0 20 chr12 21288006 21288156 -99969374 + B1_Mus1 SINE Alu 2 148 0 5 747 597 219 18 0 chr12 21288161 21288275 -99969255 + MERVL-int LTR ERVL 62 177 -5308 5 747 568 293 18 134 chr12 21289218 21289494 -99968036 - MER2 DNA MER2_type -100 245 2 5 747 1386 84 0 31 chr12 21289511 21289707 -99967823 - B2_Mm2 SINE B2 -5 190 1 5 747 1155 62 21 0 chr12 21289754 21289898 -99967632 + B1_Mus1 SINE Alu 2 148 0 5 747 264 259 0 0 chr12 21290566 21290620 -99966910 - B3A SINE B2 -137 61 8 5 747 1419 75 11 5 chr12 21290702 21290891 -99966639 + B2_Mm1t SINE B2 1 190 -3 5 747 231 36 0 0 chr12 21290891 21290919 -99966611 + (GGA)n Simple_repeat Simple_repeat 3 30 0 5 747 466 242 10 48 chr12 21294304 21294408 -99963122 - B1F1 SINE Alu -39 110 11 5 747 279 364 27 67 chr12 21294408 21294446 -99963084 - B4 SINE B4 -85 185 64 5 747 202 379 76 0 chr12 21294604 21294736 -99962794 - L2a LINE L2 -269 3157 3016 5 747 196 352 139 35 chr12 21294731 21295134 -99962396 - L2a LINE L2 -964 2455 2011 5 747 454 240 28 40 chr12 21295309 21295449 -99962081 - B1_Mur2 SINE Alu -1 148 24 5 747 1068 102 102 6 chr12 21296782 21296959 -99960571 - B2_Mm2 SINE B2 -1 194 1 5 747 1172 197 0 24 chr12 21297018 21297231 -99960299 - B3 SINE B2 -7 209 2 5 747 232 204 0 0 chr12 21297882 21297926 -99959604 - RSINE1 SINE B4 -118 47 4 5 747 1386 62 17 11 chr12 21297944 21298124 -99959406 - B2_Mm2 SINE B2 -14 181 1 5 747 636 212 21 35 chr12 21298166 21298308 -99959222 + B1_Mur1 SINE Alu 10 149 0 5 747 400 274 38 0 chr12 21298534 21298640 -99958890 + PB1D7 SINE Alu 5 114 -6 5 747 706 129 26 8 chr12 21298659 21298776 -99958754 + PB1D9 SINE Alu 1 119 -1 5 747 268 229 135 18 chr12 21298898 21299009 -99958521 + RSINE1 SINE B4 31 154 -11 5 747 365 239 130 27 chr12 21299755 21299901 -99957629 - MIR SINE MIR -76 186 26 5 747 1972 140 98 22 chr12 21300111 21300470 -99957060 + ORR1B1 LTR MaLR 1 386 -8 5 747 244 200 0 0 chr12 21300476 21300521 -99957009 + B1F SINE Alu 103 147 -2 5 747 226 280 40 13 chr12 21300534 21300610 -99956920 + ID4 SINE ID 3 80 -3 5 747 353 333 15 15 chr12 21301335 21301466 -99956064 + RSINE1 SINE B4 4 134 -31 5 747 504 212 24 141 chr12 21301680 21301850 -99955680 - RSINE1 SINE B4 0 165 16 5 747 643 66 25 2 chr12 21302078 21302192 -99955338 - B1_Mus2 SINE Alu 0 149 34 5 747 1338 72 50 0 chr12 21303829 21304009 -99953521 - B2_Mm2 SINE B2 -6 189 1 5 747 270 237 50 50 chr12 21304326 21304406 -99953124 - B1F1 SINE Alu -2 147 68 5 747 23 0 0 0 chr12 21304495 21304518 -99953012 + AT_rich Low_complexity Low_complexity 1 23 0 5 747 1175 61 0 13 chr12 21304528 21304677 -99952853 + B1_Mm SINE Alu 1 147 0 5 747 207 100 0 0 chr12 21304729 21304759 -99952771 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 5 747 672 182 12 0 chr12 21305527 21305657 -99951873 + B1_Mur4 SINE Alu 16 150 0 5 747 836 185 0 20 chr12 21306477 21306626 -99950904 - B1_Mus2 SINE Alu 0 147 2 5 747 3963 47 2 8 chr12 21306650 21307140 -99950390 - L1Md_F3 LINE L1 0 6584 6098 5 747 315 345 148 6 chr12 21308586 21308783 -99948747 + MIRb SINE MIR 16 238 -30 5 747 184 0 62 31 chr12 21308916 21308948 -99948582 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 5 747 1112 65 7 0 chr12 21308948 21309086 -99948444 - B1_Mus1 SINE Alu -9 139 1 5 747 240 250 117 117 chr12 21309125 21309288 -99948242 + RSINE1 SINE B4 3 165 0 5 747 345 276 98 13 chr12 21309510 21309753 -99947777 - L1MB4 LINE L1 -3 6180 5913 5 747 510 79 0 0 chr12 21310960 21311036 -99946494 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 747 875 205 25 30 chr12 21311393 21311594 -99945936 - B3 SINE B2 -16 200 1 5 747 337 303 20 10 chr12 21311612 21311712 -99945818 + PB1D10 SINE Alu 6 106 -11 5 747 1228 54 0 0 chr12 21312088 21312235 -99945295 - B1_Mus2 SINE Alu 0 147 1 5 747 366 74 0 0 chr12 21312831 21312885 -99944645 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 747 407 164 55 0 chr12 21313154 21313227 -99944303 - B3A SINE B2 -121 77 1 5 747 287 280 73 48 chr12 21313687 21313811 -99943719 - B1_Mm SINE Alu -20 127 1 5 747 675 215 134 0 chr12 21314959 21315131 -99942399 + Lx9 LINE L1 7283 7477 -167 5 747 297 174 11 55 chr12 21315152 21315243 -99942287 + Lx9 LINE L1 7534 7620 -24 5 747 1073 78 35 0 chr12 21315267 21315408 -99942122 - B1_Mus2 SINE Alu 0 147 2 5 747 832 88 0 0 chr12 21315433 21315546 -99941984 + B1_Mus1 SINE Alu 1 113 -35 5 747 536 233 53 0 chr12 21315544 21315677 -99941853 + B3 SINE B2 15 154 -62 5 747 183 339 36 0 chr12 21315830 21315886 -99941644 + MIRb SINE MIR 162 219 -49 5 747 255 235 0 29 chr12 21316577 21316647 -99940883 + Lx2B LINE L1 6330 6397 -603 5 747 622 232 118 51 chr12 21316881 21317076 -99940454 + ID_B1 SINE B4 11 218 -6 5 747 293 272 12 47 chr12 21317077 21317097 -99940433 + B4 SINE B4 69 85 -207 5 747 463 257 0 10 chr12 21317097 21317213 -99940317 + B1F2 SINE Alu 1 115 -5 5 747 1191 68 7 0 chr12 21317438 21317586 -99939944 + B1_Mur3 SINE Alu 1 149 0 5 747 697 244 66 33 chr12 21317619 21317801 -99939729 - B3A SINE B2 -10 188 1 5 747 23 0 0 0 chr12 21319187 21319210 -99938320 + AT_rich Low_complexity Low_complexity 1 23 0 5 747 245 281 2 0 chr12 21319314 21319371 -99938159 + PB1 SINE Alu 73 141 -8 5 747 234 293 0 0 chr12 21319853 21319911 -99937619 - PB1D10 SINE Alu -1 116 59 5 747 226 190 85 17 chr12 21319945 21320004 -99937526 - B1F SINE Alu -9 140 78 5 747 238 303 18 92 chr12 21320009 21320118 -99937412 + MT2B LTR ERVL 151 251 -350 5 747 296 267 55 13 chr12 21320031 21320145 -99937385 + PB1D10 SINE Alu 5 129 -20 5 747 379 264 97 26 chr12 21321143 21321234 -99936296 - RMER10B LTR ERVL -8 390 292 5 747 1019 94 113 0 chr12 21321234 21321393 -99936137 + B2_Mm1t SINE B2 2 178 -15 5 747 379 264 97 26 chr12 21321393 21321414 -99936116 - RMER10B LTR ERVL -107 291 270 5 747 226 73 293 0 chr12 21321412 21321453 -99936077 + B2_Mm2 SINE B2 47 99 -96 5 747 725 147 28 35 chr12 21321510 21321651 -99935879 - RMER10B LTR ERVL -245 153 14 5 747 549 162 93 19 chr12 21324335 21324442 -99933088 - ID_B1 SINE B4 0 224 110 5 747 314 287 128 17 chr12 21324341 21324458 -99933072 + YREP_Mm Unknown Unknown 180 309 -1503 5 747 370 261 13 0 chr12 21324910 21325001 -99932529 + B1F1 SINE Alu 3 95 -54 5 747 1260 102 11 0 chr12 21325010 21325186 -99932344 + B2_Mm1t SINE B2 2 179 -14 5 747 321 135 0 0 chr12 21325210 21325262 -99932268 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 747 635 192 37 44 chr12 21325358 21325494 -99932036 + B1_Mur1 SINE Alu 2 136 -13 5 747 286 233 33 0 chr12 21325495 21325555 -99931975 + ID_B1 SINE B4 163 224 0 5 747 819 176 160 5 chr12 21325928 21326122 -99931408 - URR1B DNA MER1_type 0 225 2 5 747 245 302 36 54 chr12 21327389 21327501 -99930029 + MT2B LTR ERVL 154 263 -338 5 747 590 262 63 0 chr12 21327404 21327530 -99930000 + ID_B1 SINE B4 85 218 -6 5 747 228 67 0 0 chr12 21327758 21327788 -99929742 + (TATG)n Simple_repeat Simple_repeat 3 32 0 6 747 212 190 0 33 chr12 21327802 21327862 -99929668 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 6 747 506 254 201 0 chr12 21328191 21328360 -99929170 - ID_B1 SINE B4 -20 204 2 6 747 434 67 0 16 chr12 21328613 21328674 -99928856 - B1_Mur4 SINE Alu -3 147 88 6 747 579 187 201 0 chr12 21330299 21330438 -99927092 - B3 SINE B2 -48 168 2 6 747 219 36 0 0 chr12 21330719 21330747 -99926783 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 6 747 709 64 11 0 chr12 21331645 21331739 -99925791 + B2_Mm1t SINE B2 91 185 -8 6 747 1126 67 0 0 chr12 21332077 21332212 -99925318 - B1_Mus2 SINE Alu -11 136 2 6 747 284 364 29 29 chr12 21333426 21333562 -99923968 - RSINE1 SINE B4 0 165 30 6 747 379 293 207 0 chr12 21333575 21333749 -99923781 - ID_B1 SINE B4 -11 213 4 6 747 1112 44 0 42 chr12 21334414 21334557 -99922973 - B1_Mm SINE Alu -10 137 1 6 747 787 257 23 6 chr12 21334637 21334813 -99922717 - B3 SINE B2 -24 192 14 6 747 306 180 51 31 chr12 21335612 21335711 -99921819 - B1_Mur1 SINE Alu -6 143 45 6 747 211 203 105 26 chr12 21336127 21336203 -99921327 + ID4_ SINE ID 2 83 0 6 747 895 73 0 0 chr12 21336302 21336425 -99921105 - B1_Mus1 SINE Alu 0 148 26 6 747 652 228 7 0 chr12 21336433 21336569 -99920961 + B1_Mur2 SINE Alu 13 149 0 6 747 345 239 0 0 chr12 21337393 21337464 -99920066 + RSINE1 SINE B4 12 82 -83 6 747 1103 75 0 13 chr12 21338149 21338298 -99919232 + B1_Mus2 SINE Alu 1 147 0 6 747 483 127 0 0 chr12 21338684 21338695 -99918835 + (TA)n Simple_repeat Simple_repeat 1 11 0 6 747 672 13 0 0 chr12 21338695 21338772 -99918758 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 747 483 127 0 0 chr12 21338772 21338839 -99918691 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 747 681 169 0 58 chr12 21338958 21339096 -99918434 + B1_Mus1 SINE Alu 1 130 -18 6 747 695 243 7 0 chr12 21339437 21339585 -99917945 - B1_Mur1 SINE Alu 0 149 1 6 747 318 219 0 27 chr12 21339670 21339745 -99917785 + B1_Mur3 SINE Alu 33 105 -44 6 747 992 180 115 0 chr12 21340166 21340383 -99917147 - RLTR30 LTR ERV1 0 379 138 6 747 907 101 7 0 chr12 21340410 21340548 -99916982 + URR1A DNA MER1_type 75 213 -13 6 747 442 184 147 31 chr12 21340702 21340831 -99916699 - B1_Mur1 SINE Alu -1 148 5 6 747 715 194 39 0 chr12 21341251 21341380 -99916150 + B1_Mur1 SINE Alu 1 134 -15 6 747 218 32 0 31 chr12 21341381 21341413 -99916117 + (GGGGA)n Simple_repeat Simple_repeat 2 32 0 6 747 229 307 145 26 chr12 21341454 21341571 -99915959 + RSINE1 SINE B4 18 148 -17 6 747 245 219 98 73 chr12 21342961 21343084 -99914446 + B3 SINE B2 90 215 -1 6 747 23 54 0 0 chr12 21343475 21343512 -99914018 + AT_rich Low_complexity Low_complexity 1 37 0 6 747 939 101 196 0 chr12 21343517 21343675 -99913855 + B2_Mm2 SINE B2 1 189 -6 6 747 180 0 0 0 chr12 21344058 21344078 -99913452 + (T)n Simple_repeat Simple_repeat 1 20 0 6 747 1244 41 0 0 chr12 21344078 21344224 -99913306 - B1_Mm SINE Alu 0 147 2 6 747 1332 84 0 40 chr12 21344265 21344463 -99913067 - B2_Mm2 SINE B2 -5 190 1 6 747 287 292 198 0 chr12 21344478 21344574 -99912956 + PB1D10 SINE Alu 1 115 -2 6 747 636 152 171 31 chr12 21344671 21344800 -99912730 + B1_Mus1 SINE Alu 1 147 -1 6 747 189 107 0 0 chr12 21344815 21344843 -99912687 + (TAA)n Simple_repeat Simple_repeat 2 29 0 6 747 276 261 328 0 chr12 21344896 21345015 -99912515 - B3 SINE B2 -58 158 1 6 747 334 232 192 0 chr12 21345086 21345185 -99912345 - PB1D9 SINE Alu -2 118 1 6 747 809 215 146 5 chr12 21345664 21345856 -99911674 - ID_B1 SINE B4 -1 223 5 6 747 667 292 5 43 chr12 21346104 21346290 -99911240 + B3A SINE B2 1 179 -19 6 747 239 312 61 30 chr12 21347286 21347385 -99910145 + MLT1B LTR MaLR 9 110 -280 6 747 1248 48 0 0 chr12 21347492 21347639 -99909891 - B1_Mus2 SINE Alu 0 147 1 6 747 406 126 9 128 chr12 21347896 21348005 -99909525 + MT2B LTR ERVL 169 264 -337 6 747 896 57 16 0 chr12 21347909 21348033 -99909497 + B1_Mur3 SINE Alu 17 142 -7 6 747 493 259 52 0 chr12 21348936 21349071 -99908459 + B1_Mm SINE Alu 2 143 -4 6 747 345 287 49 10 chr12 21349106 21349208 -99908322 + B3 SINE B2 2 107 -109 6 747 288 279 11 23 chr12 21349236 21349324 -99908206 + PB1D10 SINE Alu 24 110 -7 6 747 273 197 0 0 chr12 21349344 21349405 -99908125 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 747 969 88 6 51 chr12 21349502 21349658 -99907872 + B2_Mm1a SINE B2 1 149 -44 6 747 458 46 0 15 chr12 21349658 21349724 -99907806 + (CATA)n Simple_repeat Simple_repeat 3 67 0 6 747 1231 34 0 14 chr12 21349908 21350056 -99907474 + B1_Mus2 SINE Alu 2 147 0 6 747 1455 71 6 0 chr12 21351061 21351244 -99906286 + B2_Mm1a SINE B2 2 185 -8 6 747 480 191 11 0 chr12 21353439 21353533 -99903997 - ID_B1 SINE B4 -12 212 118 6 747 1147 68 0 26 chr12 21353613 21353764 -99903766 + B1_Mm SINE Alu 1 147 0 6 747 1387 70 11 16 chr12 21353803 21353991 -99903539 + B2_Mm1t SINE B2 1 187 -6 6 747 29 47 0 0 chr12 21354165 21354208 -99903322 + AT_rich Low_complexity Low_complexity 1 43 0 6 747 417 225 54 0 chr12 21354243 21354354 -99903176 + PB1D10 SINE Alu 1 117 0 6 747 898 237 0 30 chr12 21354568 21354768 -99902762 + MTD LTR MaLR 7 200 -219 6 747 884 61 30 0 chr12 21354982 21355114 -99902416 - B1_Mm SINE Alu 0 147 12 6 747 907 75 7 118 chr12 21355114 21355266 -99902264 - B1_Mus2 SINE Alu -11 136 2 6 747 1444 80 0 16 chr12 21355355 21355545 -99901985 + B2_Mm2 SINE B2 1 187 -8 6 747 417 208 122 26 chr12 21357020 21357127 -99900403 - B1F SINE Alu -6 143 30 6 747 235 167 62 0 chr12 21357131 21357179 -99900351 - B1F SINE Alu -77 72 22 6 747 385 209 12 0 chr12 21357278 21357364 -99900166 + ID_B1 SINE B4 129 215 -9 6 747 297 50 0 0 chr12 21357564 21357604 -99899926 + MuRRS4-int LTR ERV1 5024 5063 0 6 747 1587 155 20 45 chr12 21357609 21357987 -99899543 + LTRIS3 LTR ERV1 132 512 0 6 747 432 302 76 15 chr12 21357990 21358121 -99899409 + RSINE1 SINE B4 27 165 0 6 747 431 260 10 0 chr12 21358360 21358456 -99899074 + PB1D7 SINE Alu 23 119 -1 6 747 725 185 52 0 chr12 21358471 21358606 -99898924 + B1_Mus2 SINE Alu 1 142 -5 6 747 243 0 0 0 chr12 21358620 21358647 -99898883 + (CAAGG)n Simple_repeat Simple_repeat 2 28 0 6 747 1383 11 0 33 chr12 21358647 21358830 -99898700 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 6 747 267 54 0 0 chr12 21358847 21358884 -99898646 + (CAAGG)n Simple_repeat Simple_repeat 2 38 0 6 747 251 250 0 0 chr12 21359004 21359052 -99898478 + polypurine Low_complexity Low_complexity 3 50 0 6 747 1386 100 11 0 chr12 21359107 21359297 -99898233 - B2_Mm1t SINE B2 0 193 2 6 747 1446 79 16 0 chr12 21359988 21360178 -99897352 - B2_Mm2 SINE B2 -1 194 2 6 747 491 218 40 0 chr12 21360211 21360312 -99897218 + U6 snRNA snRNA 2 106 -1 6 747 737 227 33 33 chr12 21360349 21360531 -99896999 - B3A SINE B2 -16 182 1 6 747 782 64 9 0 chr12 21360582 21360692 -99896838 + B1_Mus1 SINE Alu 38 148 0 6 747 194 0 39 0 chr12 21360696 21360722 -99896808 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 747 1160 75 0 0 chr12 21360733 21360880 -99896650 + B1_Mus2 SINE Alu 1 147 0 6 747 612 260 123 0 chr12 21360977 21361123 -99896407 + RSINE1 SINE B4 2 165 0 6 747 1551 57 5 0 chr12 21362023 21362215 -99895315 - B2_Mm1a SINE B2 0 193 1 6 747 216 0 0 0 chr12 21362465 21362489 -99895041 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 747 1015 34 0 179 chr12 21362506 21362685 -99894845 - B1_Mus2 SINE Alu 0 147 1 6 747 416 182 36 9 chr12 21363538 21363649 -99893881 - B1_Mur2 SINE Alu -29 120 7 6 747 1340 85 32 5 chr12 21364237 21364426 -99893104 - B2_Mm2 SINE B2 0 195 2 6 93 377 261 54 88 chr12 21364687 21364834 -99892696 + B1F2 SINE Alu 1 142 -7 6 748 602 240 24 0 chr12 21365014 21365139 -99892391 + RSINE1 SINE B4 16 143 -22 6 748 1428 85 11 0 chr12 21365228 21365417 -99892113 + B2_Mm1t SINE B2 2 192 -1 6 748 213 368 0 0 chr12 21365530 21365598 -99891932 - ID SINE ID -149 75 8 6 748 1122 111 41 0 chr12 21365810 21365981 -99891549 + B2_Mm1t SINE B2 2 179 -14 6 748 343 97 313 26 chr12 21365994 21366109 -99891421 + B2_Mm2 SINE B2 47 194 -1 6 748 845 157 7 0 chr12 21366501 21366641 -99890889 - B1_Mur4 SINE Alu -1 149 9 6 748 279 245 82 36 chr12 21366544 21366654 -99890876 - B4A SINE B4 -98 194 80 6 748 326 210 37 0 chr12 21366706 21366787 -99890743 - B3A SINE B2 -114 84 1 6 748 389 221 48 156 chr12 21366792 21366990 -99890540 + B3A SINE B2 33 216 0 6 748 25 0 0 0 chr12 21366991 21367016 -99890514 + AT_rich Low_complexity Low_complexity 1 25 0 6 748 1052 184 34 24 chr12 21367020 21367226 -99890304 + B3 SINE B2 5 212 -4 7 748 1200 68 0 0 chr12 21367681 21367829 -99889701 + B1_Mus1 SINE Alu 1 148 0 7 748 688 212 0 42 chr12 21367844 21368011 -99889519 + B3A SINE B2 3 162 -36 7 748 1056 186 44 25 chr12 21368079 21368283 -99889247 + B3 SINE B2 3 210 -6 7 748 859 182 114 50 chr12 21368306 21368461 -99889069 + B3 SINE B2 1 172 -44 7 748 193 75 50 0 chr12 21368461 21368501 -99889029 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 748 859 182 114 50 chr12 21368501 21368547 -99888983 + B3 SINE B2 173 214 -2 7 748 783 0 0 0 chr12 21369501 21369588 -99887942 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 7 748 907 210 80 0 chr12 21369646 21369846 -99887684 + B3 SINE B2 1 216 0 7 748 1206 48 7 0 chr12 21369996 21370141 -99887389 + B1_Mm SINE Alu 2 147 0 7 748 180 0 0 0 chr12 21370141 21370161 -99887369 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 748 375 247 242 20 chr12 21370933 21371082 -99886448 + MER5A DNA MER1_type 7 188 -1 7 748 254 274 28 64 chr12 21371096 21371205 -99886325 + PB1D7 SINE Alu 7 111 -9 7 748 21 0 0 0 chr12 21371257 21371278 -99886252 + AT_rich Low_complexity Low_complexity 1 21 0 7 748 653 125 0 0 chr12 21372404 21372508 -99885022 + BC1_Mm scRNA scRNA 1 104 -48 7 748 895 40 103 0 chr12 21372698 21372824 -99884706 + B1_Mus2 SINE Alu 9 147 0 7 748 612 50 0 0 chr12 21372825 21372905 -99884625 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 7 748 718 198 197 6 chr12 21372928 21373106 -99884424 + B3 SINE B2 2 213 -3 7 748 235 288 137 0 chr12 21373231 21373304 -99884226 + B1_Mur2 SINE Alu 21 103 -46 7 748 324 0 0 0 chr12 21373579 21373615 -99883915 + (TATG)n Simple_repeat Simple_repeat 1 36 0 7 748 231 88 0 0 chr12 21373618 21373652 -99883878 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 748 21 0 0 0 chr12 21374042 21374063 -99883467 + AT_rich Low_complexity Low_complexity 1 21 0 7 748 207 0 0 0 chr12 21374237 21374260 -99883270 + (CAA)n Simple_repeat Simple_repeat 1 23 0 7 748 279 143 473 21 chr12 21374799 21374892 -99882638 - B1_Mus2 SINE Alu -12 135 1 7 748 213 39 0 0 chr12 21375013 21375039 -99882491 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 7 748 189 94 0 0 chr12 21375195 21375227 -99882303 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 7 748 327 25 0 0 chr12 21375299 21375339 -99882191 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 7 748 1124 70 0 13 chr12 21375339 21375497 -99882033 - B2_Mm2 SINE B2 -38 157 2 7 748 214 175 129 81 chr12 21375841 21375903 -99881627 - ID4 SINE ID -14 69 5 7 748 1537 44 6 0 chr12 21376714 21376896 -99880634 + B2_Mm1t SINE B2 3 185 -8 7 748 252 0 0 0 chr12 21376896 21376924 -99880606 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 748 25 31 0 0 chr12 21376968 21377000 -99880530 + AT_rich Low_complexity Low_complexity 1 32 0 7 748 454 206 78 0 chr12 21377024 21377126 -99880404 + B1_Mur2 SINE Alu 33 142 -7 7 748 1216 35 0 0 chr12 21377138 21377283 -99880247 + B1_Mus2 SINE Alu 3 147 0 7 748 225 0 0 0 chr12 21377286 21377311 -99880219 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 7 748 752 184 22 7 chr12 21377776 21377913 -99879617 + B1_Mur1 SINE Alu 3 141 -8 7 748 1110 40 20 20 chr12 21377947 21378100 -99879430 + B2_Mm2 SINE B2 1 153 -42 7 748 396 0 0 0 chr12 21378100 21378144 -99879386 + (CATA)n Simple_repeat Simple_repeat 4 47 0 7 748 25 0 0 0 chr12 21379558 21379583 -99877947 + GC_rich Low_complexity Low_complexity 1 25 0 7 748 354 23 0 0 chr12 21380379 21380422 -99877108 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 7 748 1151 51 0 0 chr12 21380422 21380560 -99876970 - B1_Mus1 SINE Alu -8 140 3 7 748 786 192 112 15 chr12 21380715 21380921 -99876609 - URR1A DNA MER1_type 0 226 1 7 748 497 65 0 61 chr12 21380985 21381067 -99876463 - B1_Mus2 SINE Alu 0 147 71 7 748 238 170 21 0 chr12 21381327 21381374 -99876156 + B1F SINE Alu 9 56 -93 7 748 222 263 18 0 chr12 21381523 21381580 -99875950 - B1F SINE Alu -91 58 1 7 748 1202 215 129 94 chr12 21381809 21382353 -99875177 + RMER4B LTR ERVK 17 579 -6 7 748 1140 82 0 0 chr12 21382356 21382503 -99875027 + B1_Mus2 SINE Alu 1 147 0 7 748 212 77 26 0 chr12 21382503 21382542 -99874988 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 7 748 496 249 227 17 chr12 21382713 21382889 -99874641 - ID_B1 SINE B4 -9 215 3 7 748 1132 62 0 14 chr12 21383365 21383512 -99874018 + B1_Mm SINE Alu 1 145 -2 7 748 222 37 0 0 chr12 21383519 21383546 -99873984 + (A)n Simple_repeat Simple_repeat 1 27 0 7 748 261 170 0 0 chr12 21383605 21383652 -99873878 + B3 SINE B2 106 152 -64 7 748 251 190 17 0 chr12 21383897 21383955 -99873575 + (CATA)n Simple_repeat Simple_repeat 2 60 0 7 748 3251 24 50 0 chr12 21384859 21385236 -99872294 + MTA_Mm LTR MaLR 1 396 0 7 748 940 16 8 8 chr12 21385931 21386056 -99871474 - B1_Mus1 SINE Alu 0 148 24 7 748 832 210 127 0 chr12 21386166 21386347 -99871183 + B3 SINE B2 2 205 -11 7 748 1095 110 0 0 chr12 21387116 21387262 -99870268 + B1_Mus2 SINE Alu 2 147 0 7 748 817 180 6 6 chr12 21387275 21387448 -99870082 + GA-rich Low_complexity Low_complexity 3 175 0 7 748 2497 42 52 0 chr12 21387514 21387822 -99869708 + L1Md_A LINE L1 6259 6582 0 7 748 598 266 117 20 chr12 21387842 21388038 -99869492 + B3 SINE B2 2 216 0 7 748 1173 68 7 0 chr12 21388085 21388231 -99869299 + B1_Mus1 SINE Alu 2 148 0 7 748 399 267 41 0 chr12 21388498 21388613 -99868917 - B1_Mur2 SINE Alu -27 122 2 7 748 678 151 30 53 chr12 21388764 21388897 -99868633 + B3 SINE B2 1 130 -86 7 748 874 101 0 0 chr12 21388956 21389085 -99868445 + B1_Mus1 SINE Alu 20 148 0 7 748 480 88 44 0 chr12 21390303 21390371 -99867159 - SSU-rRNA_Hsa rRNA rRNA -1270 599 529 7 748 489 322 56 0 chr12 21390485 21390665 -99866865 - B3 SINE B2 -26 190 1 7 748 262 253 170 50 chr12 21390722 21390822 -99866708 + PB1D10 SINE Alu 3 114 -3 7 748 346 316 17 26 chr12 21391145 21391262 -99866268 - B1F SINE Alu -7 142 27 7 748 841 89 137 0 chr12 21391282 21391406 -99866124 - B1_Mus1 SINE Alu -7 141 1 7 748 357 240 13 0 chr12 21391569 21391644 -99865886 + B3A SINE B2 11 86 -112 7 748 225 0 0 0 chr12 21391669 21391694 -99865836 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 748 573 211 49 0 chr12 21391736 21391878 -99865652 + B3 SINE B2 1 149 -67 7 748 549 248 29 36 chr12 21392442 21392580 -99864950 + B1_Mur1 SINE Alu 3 139 -10 7 748 1202 55 0 0 chr12 21392696 21392841 -99864689 + B1_Mus2 SINE Alu 3 147 0 7 748 360 0 0 0 chr12 21392841 21392881 -99864649 + (A)n Simple_repeat Simple_repeat 1 40 0 7 748 23 0 0 0 chr12 21392883 21392906 -99864624 + AT_rich Low_complexity Low_complexity 1 23 0 7 748 554 274 78 93 chr12 21392921 21393192 -99864338 - L1MA4A LINE L1 -427 5876 5593 7 748 1155 62 7 0 chr12 21393192 21393337 -99864193 + B1_Mus2 SINE Alu 2 147 0 7 748 554 274 78 93 chr12 21393337 21393451 -99864079 - L1MA4A LINE L1 -711 5592 5497 7 748 704 237 40 68 chr12 21393479 21393701 -99863829 + B3 SINE B2 1 216 0 7 748 651 285 57 5 chr12 21393712 21393865 -99863665 - B3 SINE B2 -2 214 57 7 748 710 191 14 41 chr12 21393865 21394012 -99863518 + B1_Mur3 SINE Alu 2 144 -5 7 748 651 285 57 5 chr12 21394012 21394052 -99863478 - B3 SINE B2 -160 56 12 7 748 559 152 132 9 chr12 21394160 21394266 -99863264 - PB1D9 SINE Alu 0 120 2 7 748 378 225 75 0 chr12 21394292 21394372 -99863158 - B1_Mus2 SINE Alu -60 87 2 7 748 489 240 90 8 chr12 21394642 21394764 -99862766 - B3 SINE B2 -70 146 15 7 748 1245 110 39 0 chr12 21394857 21395039 -99862491 + B2_Mm1a SINE B2 2 190 -3 7 748 435 208 84 9 chr12 21395180 21395287 -99862243 - PB1D9 SINE Alu -5 115 1 7 748 209 217 0 0 chr12 21395418 21395464 -99862066 + A-rich Low_complexity Low_complexity 1 46 0 7 748 276 148 0 0 chr12 21395565 21395604 -99861926 + (T)n Simple_repeat Simple_repeat 1 39 0 7 748 985 36 48 61 chr12 21395604 21395751 -99861779 - B1_Mm SINE Alu 0 147 3 7 748 276 148 0 0 chr12 21395751 21395765 -99861765 + (T)n Simple_repeat Simple_repeat 1 14 0 7 748 443 232 65 0 chr12 21397499 21397637 -99859893 + MTD LTR MaLR 273 419 0 7 748 982 99 0 53 chr12 21398082 21398232 -99859298 + B1_Mm SINE Alu 5 146 -1 7 748 202 51 24 49 chr12 21398232 21398273 -99859257 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 748 938 112 26 0 chr12 21398304 21398456 -99859074 + B2_Mm1t SINE B2 24 179 -14 7 748 255 164 0 35 chr12 21398483 21398540 -99858990 + B2_Mm2 SINE B2 47 101 -94 7 748 1511 40 0 0 chr12 21398578 21398751 -99858779 + B2_Mm1a SINE B2 2 174 -19 7 748 1343 207 114 22 chr12 21399598 21399854 -99857676 + MTD LTR MaLR 12 289 -130 7 748 740 181 21 28 chr12 21399854 21399996 -99857534 - B1_Mur4 SINE Alu -5 145 5 7 748 1343 207 114 22 chr12 21399996 21400099 -99857431 + MTD LTR MaLR 290 403 -16 7 748 459 297 34 0 chr12 21400210 21400328 -99857202 - B3A SINE B2 -75 123 2 7 748 780 148 7 47 chr12 21400585 21400734 -99856796 + B1_Mur4 SINE Alu 8 150 0 7 748 1195 125 0 90 chr12 21401190 21401376 -99856154 + B2_Mm2 SINE B2 1 171 -24 7 748 903 74 87 14 chr12 21401376 21401514 -99856016 - B1_Mus1 SINE Alu 0 148 1 8 748 1195 125 0 90 chr12 21401514 21401538 -99855992 + B2_Mm2 SINE B2 172 192 -3 7 748 1421 68 6 0 chr12 21401538 21401715 -99855815 - B2_Mm1a SINE B2 -14 179 2 8 748 22 35 0 0 chr12 21401715 21401744 -99855786 + AT_rich Low_complexity Low_complexity 1 29 0 8 748 888 34 160 0 chr12 21401744 21401863 -99855667 + B1_Mm SINE Alu 1 138 -9 8 748 428 264 218 30 chr12 21402452 21402585 -99854945 + RSINE1 SINE B4 3 160 -5 8 748 360 200 75 0 chr12 21402859 21402939 -99854591 - PB1D10 SINE Alu 0 117 32 8 748 694 211 15 0 chr12 21403005 21403138 -99854392 - B1_Mur4 SINE Alu -6 144 10 8 748 532 202 232 6 chr12 21403181 21403345 -99854185 + B3 SINE B2 6 206 -10 8 748 346 273 115 47 chr12 21403373 21403565 -99853965 - Lx8 LINE L1 -2 7471 7267 8 748 1228 88 21 37 chr12 21404666 21404854 -99852676 + B2_Mm2 SINE B2 1 185 -10 8 748 394 271 122 78 chr12 21404970 21405174 -99852356 + Lx8 LINE L1 6193 6405 -1068 8 748 237 33 0 0 chr12 21405191 21405221 -99852309 + (T)n Simple_repeat Simple_repeat 1 30 0 8 748 1162 248 63 22 chr12 21405230 21405547 -99851983 + MTD LTR MaLR 47 376 -43 8 748 1096 86 87 44 chr12 21405547 21405730 -99851800 - B2_Mm1t SINE B2 -2 191 1 8 748 1441 268 141 24 chr12 21405797 21406344 -99851186 + Lx8 LINE L1 6443 7053 -420 8 748 314 317 69 0 chr12 21406452 21406553 -99850977 + Lx8 LINE L1 7152 7259 -214 8 748 433 271 86 46 chr12 21406648 21406799 -99850731 + B3A SINE B2 12 168 -30 8 748 856 51 0 17 chr12 21406995 21407115 -99850415 - B1_Mm SINE Alu -2 145 28 8 748 237 222 120 120 chr12 21407154 21407246 -99850284 + PB1 SINE Alu 17 108 -19 8 748 26 82 0 0 chr12 21407812 21407873 -99849657 + AT_rich Low_complexity Low_complexity 1 61 0 8 748 26 0 0 0 chr12 21408266 21408292 -99849238 + AT_rich Low_complexity Low_complexity 1 26 0 8 748 765 216 104 10 chr12 21408292 21408484 -99849046 + B3 SINE B2 1 210 -6 8 748 1071 37 73 0 chr12 21408538 21408674 -99848856 - B1_Mm SINE Alu 0 147 2 8 748 1091 90 14 0 chr12 21408966 21409110 -99848420 + B1_Mm SINE Alu 1 146 -1 8 748 675 197 49 0 chr12 21409172 21409294 -99848236 - B3 SINE B2 -88 128 1 8 748 296 129 353 0 chr12 21409560 21409645 -99847885 + PB1D9 SINE Alu 6 120 0 8 748 232 132 225 42 chr12 21410295 21410366 -99847164 + MT2B LTR ERVL 158 241 -360 8 748 1246 41 7 0 chr12 21410568 21410715 -99846815 + B1_Mus1 SINE Alu 1 148 0 8 748 220 0 86 0 chr12 21410715 21410750 -99846780 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 8 748 633 145 53 0 chr12 21410810 21410941 -99846589 - URR1A DNA MER1_type -15 211 74 8 748 1259 62 3 2 chr12 21411304 21411495 -99846035 + B2_Mm2 SINE B2 2 193 0 8 748 336 220 171 30 chr12 21411723 21411887 -99845643 - B2_Mm2 SINE B2 -8 187 1 8 748 842 170 53 42 chr12 21412147 21412337 -99845193 + B2_Mm2 SINE B2 3 194 -1 8 748 1292 86 63 0 chr12 21412438 21412613 -99844917 + B2_Mm1t SINE B2 1 186 -7 8 748 551 182 9 35 chr12 21413110 21413224 -99844306 + B1_Mus1 SINE Alu 36 146 -2 8 748 1360 197 139 39 chr12 21413834 21414172 -99843358 - ORR1D1 LTR MaLR -1 373 2 8 748 709 100 0 0 chr12 21414469 21414569 -99842961 - B1_Mus1 SINE Alu -48 100 1 8 748 726 218 189 4 chr12 21414574 21414818 -99842712 + MT2A LTR ERVL 241 529 -4 8 748 687 55 154 0 chr12 21415150 21415260 -99842270 + B1_Mus2 SINE Alu 21 147 0 8 748 25 0 0 0 chr12 21415273 21415298 -99842232 + AT_rich Low_complexity Low_complexity 1 25 0 8 748 500 291 55 60 chr12 21415300 21415483 -99842047 - ID_B1 SINE B4 -39 185 4 8 748 1033 131 16 37 chr12 21415704 21415895 -99841635 + B2_Mm1a SINE B2 4 190 -3 8 748 539 92 11 0 chr12 21415965 21416052 -99841478 + (TA)n Simple_repeat Simple_repeat 1 88 0 8 748 2367 153 84 96 chr12 21416215 21416282 -99841248 + RMER4B LTR ERVK 1 54 -531 8 748 1175 64 0 0 chr12 21416282 21416423 -99841107 + B1_Mm SINE Alu 2 142 -5 8 748 2367 153 84 96 chr12 21416423 21416947 -99840583 + RMER4B LTR ERVK 55 585 0 8 748 1116 56 14 0 chr12 21416997 21417139 -99840391 + B1_Mus2 SINE Alu 3 146 -1 8 748 1331 116 16 0 chr12 21417230 21417419 -99840111 + B2_Mm2 SINE B2 1 192 -3 8 748 1053 109 0 0 chr12 21417815 21417962 -99839568 + B1_Mm SINE Alu 1 147 0 8 748 292 86 0 147 chr12 21417965 21418033 -99839497 - B2_Mm2 SINE B2 -14 181 124 8 748 1190 98 5 85 chr12 21418101 21418114 -99839416 - B2_Mm2 SINE B2 -1 194 182 8 748 700 194 64 7 chr12 21418114 21418254 -99839276 - B1_Mur3 SINE Alu 0 149 2 8 748 1190 98 5 85 chr12 21418254 21418269 -99839261 - B2_Mm2 SINE B2 -14 181 169 8 748 879 99 40 66 chr12 21418269 21418420 -99839110 + B1_Mus1 SINE Alu 2 148 0 8 748 1190 98 5 85 chr12 21418420 21418601 -99838929 - B2_Mm2 SINE B2 -27 168 1 8 748 249 339 133 35 chr12 21418620 21418733 -99838797 - PB1 SINE Alu -3 124 1 8 748 416 254 52 17 chr12 21418742 21418858 -99838672 - ID_B1 SINE B4 -2 222 103 8 748 1032 224 172 8 chr12 21419217 21419531 -99837999 - ORR1D1 LTR MaLR -8 413 1 8 748 254 213 98 0 chr12 21420084 21420145 -99837385 + BC1_Mm scRNA scRNA 14 80 -72 8 748 189 0 0 0 chr12 21420673 21420694 -99836836 + (CAAAT)n Simple_repeat Simple_repeat 2 22 0 8 748 634 216 79 69 chr12 21421040 21421229 -99836301 + B3 SINE B2 2 192 -24 8 748 25 0 0 0 chr12 21423005 21423030 -99834500 + GC_rich Low_complexity Low_complexity 1 25 0 8 748 26 64 0 0 chr12 21423125 21423172 -99834358 + GC_rich Low_complexity Low_complexity 1 47 0 8 748 209 122 20 0 chr12 21425330 21425361 -99832169 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 8 748 1670 26 0 0 chr12 21425361 21425552 -99831978 - B2_Mm1a SINE B2 -1 192 2 8 748 209 122 20 0 chr12 21425552 21425569 -99831961 + (TTTA)n Simple_repeat Simple_repeat 4 20 0 8 748 219 69 0 0 chr12 21425664 21425693 -99831837 + (A)n Simple_repeat Simple_repeat 1 29 0 8 748 189 292 139 16 chr12 21426033 21426155 -99831375 + MIR SINE MIR 30 166 -96 8 748 721 90 0 35 chr12 21426321 21426436 -99831094 + B1_Mus1 SINE Alu 38 148 0 8 748 612 154 202 8 chr12 21426544 21426668 -99830862 - B1_Mur4 SINE Alu 0 150 3 8 748 433 307 67 35 chr12 21426671 21426903 -99830627 + MLT2B4 LTR ERVL 102 353 -111 8 748 1095 303 30 35 chr12 21426947 21427212 -99830318 + MTE2b LTR MaLR 1 266 -113 8 748 1040 85 21 0 chr12 21427212 21427353 -99830177 - B1_Mus2 SINE Alu -2 145 2 8 748 1095 274 19 11 chr12 21427353 21427468 -99830062 + MTE2b LTR MaLR 267 371 -8 8 748 252 86 0 0 chr12 21428299 21428334 -99829196 + (T)n Simple_repeat Simple_repeat 1 35 0 8 748 1198 35 14 0 chr12 21428336 21428481 -99829049 - B1_Mm SINE Alu 0 147 1 8 748 1686 38 0 5 chr12 21428497 21428708 -99828822 - L1Md_F3 LINE L1 0 6584 6375 8 748 1482 26 10 45 chr12 21428842 21429043 -99828487 - L1Md_F3 LINE L1 0 6584 6391 8 748 1023 43 0 0 chr12 21429044 21429184 -99828346 + L1Md_Gf LINE L1 1001 1140 -5382 8 748 203 345 0 0 chr12 21429193 21429251 -99828279 - L2a LINE L2 -9 3417 3360 8 748 244 291 116 26 chr12 21429324 21429479 -99828051 + RMER15 LTR ERVL 405 573 -2 8 748 381 244 156 90 chr12 21429797 21429964 -99827566 - B3 SINE B2 -34 182 5 8 748 495 0 0 0 chr12 21429966 21430021 -99827509 + (CATA)n Simple_repeat Simple_repeat 2 56 0 8 748 465 298 150 10 chr12 21430021 21430214 -99827316 - ID_B1 SINE B4 -4 220 1 8 748 22 0 0 0 chr12 21430229 21430251 -99827279 + AT_rich Low_complexity Low_complexity 1 22 0 8 748 181 98 24 24 chr12 21430406 21430448 -99827082 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 8 748 771 259 115 24 chr12 21430979 21431232 -99826298 - MTE2b LTR MaLR -80 299 24 8 748 311 347 47 27 chr12 21431503 21431680 -99825850 + MIR SINE MIR 3 183 -85 8 748 402 21 0 0 chr12 21432761 21432808 -99824722 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 748 560 156 0 0 chr12 21433089 21433185 -99824345 + MTC LTR MaLR 326 421 0 8 748 300 267 24 14 chr12 21433252 21433334 -99824196 + ID4 SINE ID 9 91 -61 8 748 1030 84 28 0 chr12 21433406 21433548 -99823982 - B1_Mm SINE Alu 0 147 2 8 748 2315 93 200 46 chr12 21434396 21434512 -99823018 - RLTR47_MM LTR ERV1 0 532 419 8 748 1163 57 0 0 chr12 21434512 21434652 -99822878 + B1_Mm SINE Alu 2 141 -6 8 748 1266 27 0 0 chr12 21434660 21434806 -99822724 + B1_Mm SINE Alu 1 146 -1 8 748 2315 93 200 46 chr12 21434806 21435141 -99822389 - RLTR47_MM LTR ERV1 -153 379 3 8 748 1125 237 14 14 chr12 21435155 21435419 -99822111 + ORR1D2 LTR MaLR 9 295 -64 8 748 884 153 6 0 chr12 21435424 21435436 -99822094 + polypyrimidine Low_complexity Low_complexity 155 166 0 8 748 1392 56 0 0 chr12 21435436 21435614 -99821916 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 8 748 884 153 6 0 chr12 21435614 21435764 -99821766 + CT-rich Low_complexity Low_complexity 4 154 0 8 748 1063 88 0 7 chr12 21435764 21435912 -99821618 - B1_Mus1 SINE Alu 0 148 2 8 748 462 87 0 0 chr12 21435912 21435981 -99821549 + ORR1D2 LTR MaLR 302 370 0 8 748 1079 231 36 60 chr12 21436077 21436413 -99821117 - ORR1D2 LTR MaLR 0 370 43 8 748 518 272 113 47 chr12 21436624 21436898 -99820632 - B4A SINE B4 0 292 1 8 748 233 182 70 10 chr12 21437437 21437537 -99819993 + (TA)n Simple_repeat Simple_repeat 2 107 0 8 748 382 162 51 7 chr12 21437548 21437685 -99819845 + (TA)n Simple_repeat Simple_repeat 2 144 0 8 748 1151 88 0 0 chr12 21437701 21437849 -99819681 - B1_Mus1 SINE Alu 0 148 1 8 748 331 73 36 0 chr12 21438187 21438242 -99819288 + (TA)n Simple_repeat Simple_repeat 2 58 0 8 748 1238 21 7 0 chr12 21438258 21438403 -99819127 - B1_Mus2 SINE Alu 0 147 2 8 748 338 287 79 22 chr12 21438411 21438550 -99818980 + MER34A LTR ERV1 420 566 -5 9 748 276 356 112 42 chr12 21439662 21439769 -99817761 - B3A SINE B2 -14 202 1 9 748 297 296 12 12 chr12 21439769 21439851 -99817679 - B4A SINE B4 -210 82 1 9 748 431 252 0 114 chr12 21439855 21440021 -99817509 - B1_Mur1 SINE Alu -2 147 1 9 748 487 276 74 20 chr12 21440054 21440202 -99817328 - ID_B1 SINE B4 -2 222 67 9 748 430 256 72 0 chr12 21440609 21440734 -99816796 + B1F SINE Alu 15 148 -1 9 748 615 254 62 17 chr12 21441251 21441427 -99816103 + B4A SINE B4 76 259 -33 9 748 1187 75 0 0 chr12 21441438 21441585 -99815945 + B1_Mus1 SINE Alu 2 148 0 9 748 585 64 0 0 chr12 21441605 21441683 -99815847 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 748 271 303 17 60 chr12 21441980 21442096 -99815434 + MIRb SINE MIR 33 143 -125 9 748 1999 111 13 3 chr12 21442326 21442550 -99814980 - ORR1A2 LTR MaLR -8 319 97 9 748 1481 83 5 0 chr12 21442550 21442743 -99814787 - B2_Mm2 SINE B2 -1 194 1 9 748 1999 111 13 3 chr12 21442743 21442834 -99814696 - ORR1A2 LTR MaLR -231 96 3 9 748 1036 72 65 0 chr12 21443750 21443888 -99813642 - B1_Mus2 SINE Alu 0 147 1 9 748 1160 68 0 26 chr12 21444446 21444598 -99812932 + B1_Mus1 SINE Alu 1 148 0 9 748 180 0 0 0 chr12 21444848 21444868 -99812662 + (CA)n Simple_repeat Simple_repeat 2 21 0 9 748 200 161 0 0 chr12 21444876 21444907 -99812623 + MIRm SINE MIR 228 258 -18 9 748 207 100 0 0 chr12 21445376 21445406 -99812124 + (T)n Simple_repeat Simple_repeat 1 30 0 9 748 247 284 48 46 chr12 21445724 21445865 -99811665 + MIR SINE MIR 54 202 -66 9 748 851 191 13 6 chr12 21445892 21446050 -99811480 - B3 SINE B2 -6 210 52 9 748 271 246 0 15 chr12 21446086 21446152 -99811378 - RMER6B LTR ERVK -31 430 366 9 748 180 0 0 0 chr12 21446218 21446238 -99811292 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 748 1156 64 0 0 chr12 21446238 21446378 -99811152 - B1_Mus2 SINE Alu -7 140 1 9 748 982 70 78 0 chr12 21446530 21446659 -99810871 + B1_Mus1 SINE Alu 2 140 -8 9 748 207 0 0 0 chr12 21446659 21446682 -99810848 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 748 220 255 0 0 chr12 21447112 21447163 -99810367 - B3A SINE B2 -147 51 1 9 748 603 78 0 0 chr12 21447251 21447341 -99810189 + (TC)n Simple_repeat Simple_repeat 2 91 0 9 748 1856 123 64 128 chr12 21447506 21447585 -99809945 - ORR1B2 LTR MaLR 0 367 326 9 748 735 153 71 28 chr12 21447585 21447726 -99809804 - B1_Mus1 SINE Alu 0 148 2 9 748 1856 123 64 128 chr12 21447726 21448038 -99809492 - ORR1B2 LTR MaLR -42 325 1 9 748 275 289 33 11 chr12 21448105 21448196 -99809334 + CT-rich Low_complexity Low_complexity 4 96 0 9 748 1636 138 211 16 chr12 21448331 21448654 -99808876 - ORR1B1 LTR MaLR -8 386 1 9 748 547 221 18 9 chr12 21449256 21449370 -99808160 - B1_Mur4 SINE Alu -33 117 3 9 748 213 39 0 0 chr12 21449988 21450014 -99807516 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 748 201 381 34 40 chr12 21450217 21450392 -99807138 + MIRc SINE MIR 75 248 -20 9 748 541 161 102 95 chr12 21450658 21450795 -99806735 - B1_Mur3 SINE Alu 0 149 12 9 748 850 56 0 0 chr12 21450828 21450936 -99806594 - B1_Mus2 SINE Alu 0 147 40 9 748 1163 41 13 27 chr12 21450957 21451106 -99806424 - B1_Mm SINE Alu 0 147 1 9 748 186 71 0 0 chr12 21451128 21451156 -99806374 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 9 748 1322 71 49 0 chr12 21451171 21451354 -99806176 - B2_Mm1t SINE B2 0 193 2 9 748 498 268 159 17 chr12 21451664 21451903 -99805627 + B4 SINE B4 1 273 -19 9 748 608 195 6 0 chr12 21452733 21452897 -99804633 + GA-rich Low_complexity Low_complexity 1 165 0 9 748 320 271 29 0 chr12 21453602 21453672 -99803858 + Charlie12 DNA MER1_type 8 79 -2794 9 748 300 154 0 0 chr12 21453713 21453765 -99803765 + CT-rich Low_complexity Low_complexity 2 53 0 9 748 459 0 0 0 chr12 21453938 21453989 -99803541 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 9 748 985 86 47 0 chr12 21453993 21454121 -99803409 - B1_Mus2 SINE Alu -13 134 1 9 748 1691 31 0 0 chr12 21454197 21454389 -99803141 - B2_Mm1a SINE B2 0 193 2 9 748 360 0 0 0 chr12 21454462 21454502 -99803028 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 748 234 0 0 0 chr12 21454502 21454528 -99803002 + (GGA)n Simple_repeat Simple_repeat 3 28 0 9 748 406 151 23 11 chr12 21454887 21454974 -99802556 + CT-rich Low_complexity Low_complexity 3 90 0 9 748 1037 65 58 0 chr12 21454974 21455112 -99802418 - B1_Mm SINE Alu 0 147 2 9 748 275 342 131 33 chr12 21455120 21455365 -99802165 - LTR81B LTR ERV1? -990 403 135 9 748 485 284 58 68 chr12 21455407 21455694 -99801836 + RLTR12B LTR ERVK 216 496 -31 9 748 1324 87 38 0 chr12 21455745 21455929 -99801601 + B2_Mm2 SINE B2 3 193 -2 9 748 539 273 86 53 chr12 21456360 21456604 -99800926 + B4A SINE B4 41 292 0 9 748 359 222 11 69 chr12 21457208 21457295 -99800235 - ID SINE ID -142 82 1 9 748 257 246 66 0 chr12 21457653 21457714 -99799816 - PB1D7 SINE Alu -22 98 34 9 748 467 280 51 182 chr12 21458008 21458261 -99799269 + RSINE1 SINE B4 10 229 -63 9 748 526 225 18 0 chr12 21458276 21458387 -99799143 + Lx8 LINE L1 7262 7374 -99 9 748 948 192 354 0 chr12 21458387 21458695 -99798835 - MTD LTR MaLR 0 419 1 9 748 554 0 15 0 chr12 21458750 21458816 -99798714 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 9 748 1164 55 0 7 chr12 21458953 21459090 -99798440 + B1_Mus2 SINE Alu 1 137 -10 9 748 532 0 14 14 chr12 21459090 21459159 -99798371 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 9 748 1452 44 0 0 chr12 21459184 21459364 -99798166 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 748 579 282 87 163 chr12 21459873 21460161 -99797369 - B4A SINE B4 -4 288 23 9 748 685 281 25 42 chr12 21460916 21461157 -99796373 + RLTR42-int LTR ERVK 1164 1400 -4122 9 748 264 277 55 73 chr12 21461773 21461789 -99795741 + MTD LTR MaLR 6 20 -399 9 748 207 0 0 0 chr12 21461789 21461812 -99795718 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 748 264 277 55 73 chr12 21461812 21461904 -99795626 + MTD LTR MaLR 21 112 -307 9 748 620 269 39 52 chr12 21462407 21462560 -99794970 + RSINE1 SINE B4 9 159 -6 9 748 409 189 8 133 chr12 21462586 21462714 -99794816 + MT2B LTR ERVL 153 264 -337 9 748 1115 68 0 0 chr12 21462602 21462748 -99794782 + B1_Mus1 SINE Alu 2 147 -1 9 748 25 0 0 0 chr12 21463270 21463295 -99794235 + AT_rich Low_complexity Low_complexity 1 25 0 9 748 761 244 28 6 chr12 21463317 21463494 -99794036 - B3A SINE B2 -16 182 2 9 748 1137 64 0 7 chr12 21463685 21463826 -99793704 - B1_Mus1 SINE Alu -8 140 1 9 748 735 178 20 20 chr12 21463835 21463984 -99793546 - B2_Mm2 SINE B2 -22 173 25 9 748 988 194 25 15 chr12 21464013 21464217 -99793313 - B3 SINE B2 -10 206 1 9 748 195 42 0 0 chr12 21464303 21464327 -99793203 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 9 748 343 294 73 0 chr12 21464343 21464452 -99793078 - RSINE1 SINE B4 -41 124 8 9 748 346 282 67 49 chr12 21464566 21464730 -99792800 - RMER15 LTR ERVL 0 575 409 9 748 576 0 0 0 chr12 21464931 21464995 -99792535 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 748 270 106 0 0 chr12 21465143 21465190 -99792340 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 9 748 1297 20 0 0 chr12 21465190 21465337 -99792193 - B1_Mm SINE Alu 0 147 1 9 748 283 171 143 13 chr12 21465340 21465417 -99792113 - B1_Mur3 SINE Alu -1 148 62 9 748 321 307 67 34 chr12 21465432 21465671 -99791859 + L1MC1 LINE L1 5840 6086 -247 9 748 338 256 55 11 chr12 21465716 21465807 -99791723 + L1MC1 LINE L1 6239 6333 0 9 748 283 250 184 53 chr12 21465823 21465884 -99791646 + ID SINE ID 8 83 -141 9 748 421 219 0 0 chr12 21465884 21465957 -99791573 + B1_Mur3 SINE Alu 3 75 -74 9 748 472 310 113 43 chr12 21465987 21466243 -99791287 - B4 SINE B4 -18 274 1 9 748 1338 279 108 31 chr12 21466244 21466762 -99790768 - L1MC2 LINE L1 -494 5850 5293 9 748 397 284 10 0 chr12 21466764 21466866 -99790664 + B1F2 SINE Alu 25 127 -22 9 748 901 264 25 10 chr12 21466883 21467082 -99790448 + B3 SINE B2 14 215 -1 9 748 33 0 0 0 chr12 21467110 21467143 -99790387 + AT_rich Low_complexity Low_complexity 1 33 0 9 748 793 255 49 0 chr12 21468093 21468297 -99789233 + ID_B1 SINE B4 1 214 -10 9 748 243 0 0 0 chr12 21468297 21468324 -99789206 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 748 195 69 0 0 chr12 21468342 21468371 -99789159 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 9 748 971 136 7 0 chr12 21468382 21468522 -99789008 + B1_Mur3 SINE Alu 2 142 -7 9 748 378 248 240 0 chr12 21468801 21468922 -99788608 + MER53 DNA hAT 25 174 -19 9 748 428 234 0 50 chr12 21468856 21468955 -99788575 - MER53 DNA hAT -98 95 2 9 748 198 0 0 0 chr12 21468962 21468984 -99788546 + (TTG)n Simple_repeat Simple_repeat 2 23 0 9 748 633 278 47 6 chr12 21468988 21469158 -99788372 - ID_B1 SINE B4 -14 210 34 9 748 544 248 78 0 chr12 21470273 21470414 -99787116 - ID_B1 SINE B4 0 224 73 9 748 288 302 77 47 chr12 21470306 21470476 -99787054 - MT2B2 LTR ERVL -319 265 91 9 748 269 216 157 11 chr12 21470652 21470741 -99786789 + B1_Mus2 SINE Alu 46 147 0 9 748 661 139 278 24 chr12 21470749 21470918 -99786612 + B3 SINE B2 5 216 0 9 748 242 248 114 9 chr12 21470978 21471092 -99786438 - L1MA5 LINE L1 -223 6077 5952 1 748 895 57 114 0 chr12 21471152 21471275 -99786255 + B1_Mus1 SINE Alu 2 138 -10 1 748 459 0 0 0 chr12 21471275 21471326 -99786204 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 1 748 324 207 314 24 chr12 21471383 21471507 -99786023 - RSINE1 SINE B4 -2 163 4 1 748 579 66 0 0 chr12 21471695 21471771 -99785759 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 1 748 451 139 14 0 chr12 21471932 21472004 -99785526 + ORR1D1 LTR MaLR 1 73 -301 1 748 544 194 250 18 chr12 21472006 21472174 -99785356 + ID_B1 SINE B4 1 207 -17 1 748 195 186 0 0 chr12 21472177 21472220 -99785310 + GA-rich Low_complexity Low_complexity 3 45 0 1 748 999 41 0 0 chr12 21472625 21472747 -99784783 - B1_Mm SINE Alu -3 144 23 1 748 381 176 9 133 chr12 21472657 21472762 -99784768 - MT2B LTR ERVL -337 264 173 1 748 1347 118 108 0 chr12 21472896 21473100 -99784430 + URR1A DNA MER1_type 1 226 0 1 748 1007 311 55 17 chr12 21473240 21473643 -99783887 + Charlie1a DNA MER1_type 246 663 -792 1 748 1429 252 97 33 chr12 21473807 21474353 -99783177 + Charlie1a DNA MER1_type 741 1321 -134 1 748 953 224 53 5 chr12 21474362 21474568 -99782962 - B3 SINE B2 0 216 1 1 748 260 299 9 101 chr12 21474572 21474690 -99782840 + Charlie1 DNA MER1_type 2540 2645 -136 1 748 569 256 84 13 chr12 21474690 21474844 -99782686 - RSINE1 SINE B4 0 165 1 1 748 260 299 9 101 chr12 21474844 21474944 -99782586 + Charlie1 DNA MER1_type 2646 2738 -43 1 748 820 119 73 15 chr12 21474959 21474996 -99782534 - B1_Mus1 SINE Alu 0 148 102 1 748 879 153 42 0 chr12 21474996 21475140 -99782390 - B1_Mur4 SINE Alu 0 150 1 1 748 820 119 73 15 chr12 21475140 21475238 -99782292 - B1_Mus1 SINE Alu -47 101 5 1 748 1004 115 119 18 chr12 21475245 21475413 -99782117 - B2_Mm1t SINE B2 -8 185 1 1 748 1295 101 11 16 chr12 21475446 21475637 -99781893 + B2_Mm1t SINE B2 1 190 -3 1 748 225 0 0 0 chr12 21475816 21475841 -99781689 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 1 748 1576 102 196 95 chr12 21475904 21475967 -99781563 - ORR1B2 LTR MaLR -8 359 297 1 748 1185 82 0 0 chr12 21475967 21476114 -99781416 + B1_Mus1 SINE Alu 2 148 0 1 748 1576 102 196 95 chr12 21476114 21476136 -99781394 - ORR1B2 LTR MaLR -71 296 296 1 748 192 40 0 0 chr12 21476136 21476161 -99781369 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1 748 1576 102 196 95 chr12 21476161 21476400 -99781130 - ORR1B2 LTR MaLR -71 296 1 1 748 217 271 21 0 chr12 21476406 21476454 -99781076 + ID SINE ID 2 50 -174 1 748 1191 61 0 0 chr12 21476468 21476615 -99780915 - B1_Mm SINE Alu 0 147 1 1 748 2070 82 5 139 chr12 21476801 21476864 -99780666 - ORR1B1 LTR MaLR -8 319 287 1 748 1200 34 0 52 chr12 21476864 21477018 -99780512 - B1_Mus2 SINE Alu 0 147 2 1 748 2070 82 5 139 chr12 21477018 21477322 -99780208 - ORR1B1 LTR MaLR -41 286 1 1 748 2098 122 62 109 chr12 21477329 21477753 -99779777 - ORR1B1 LTR MaLR -8 386 1 1 748 180 0 0 0 chr12 21477833 21477853 -99779677 + (TTAAA)n Simple_repeat Simple_repeat 4 23 0 1 748 207 205 0 43 chr12 21477985 21478031 -99779499 + MIRm SINE MIR 115 158 -118 1 748 628 232 19 16 chr12 21478103 21478361 -99779169 + GA-rich Low_complexity Low_complexity 1 259 0 1 748 181 185 204 0 chr12 21478361 21478415 -99779115 + L3 LINE CR1 1619 1683 -2806 1 748 985 267 132 24 chr12 21478854 21479188 -99778342 + MTD LTR MaLR 11 380 -39 1 748 25 0 0 0 chr12 21479521 21479546 -99777984 + AT_rich Low_complexity Low_complexity 1 25 0 1 748 372 255 285 59 chr12 21480194 21480415 -99777115 - B4 SINE B4 -19 273 3 1 748 211 282 67 15 chr12 21480999 21481128 -99776402 - MIR SINE MIR -5 203 69 1 748 1567 68 0 0 chr12 21481151 21481343 -99776187 - B2_Mm1t SINE B2 0 193 2 1 748 356 59 0 19 chr12 21481359 21481411 -99776119 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 748 1001 195 80 5 chr12 21481454 21481655 -99775875 + B3 SINE B2 1 216 0 1 748 2091 171 93 0 chr12 21481706 21482091 -99775439 + MTC LTR MaLR 1 421 0 1 748 6077 155 85 38 chr12 21482091 21483137 -99774393 + MTC-int LTR MaLR 1 1106 -152 1 748 776 223 234 0 chr12 21483137 21483312 -99774218 - B3 SINE B2 0 216 1 1 748 6077 155 85 38 chr12 21483312 21483464 -99774066 + MTC-int LTR MaLR 1107 1255 -3 1 748 1792 169 154 6 chr12 21483468 21483831 -99773699 + MTC LTR MaLR 1 417 -2 1 748 454 171 110 59 chr12 21483831 21483932 -99773598 + B1F2 SINE Alu 42 148 -1 1 748 360 337 20 0 chr12 21483986 21484084 -99773446 - RSINE1 SINE B4 -5 160 61 1 748 1098 83 21 0 chr12 21484125 21484269 -99773261 - B1_Mm SINE Alu 0 147 1 1 748 855 177 21 0 chr12 21484414 21484555 -99772975 - B1_Mur2 SINE Alu -3 146 3 1 748 2333 101 0 58 chr12 21485033 21485379 -99772151 - ORR1A3 LTR MaLR 0 326 1 1 748 452 62 16 0 chr12 21485744 21485808 -99771722 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 748 270 0 0 0 chr12 21485808 21485838 -99771692 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 748 321 26 0 0 chr12 21485838 21485875 -99771655 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 748 372 138 0 33 chr12 21486607 21486667 -99770863 + PB1D9 SINE Alu 2 59 -61 1 748 476 171 0 0 chr12 21486667 21486743 -99770787 + (CAGAGA)n Simple_repeat Simple_repeat 5 80 0 1 748 662 106 19 9 chr12 21486743 21486848 -99770682 + B1_Mm SINE Alu 42 147 0 1 748 205 320 0 0 chr12 21487042 21487092 -99770438 - L2b LINE L2 -21 3354 3305 1 748 663 65 0 0 chr12 21488280 21488373 -99769157 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 748 306 0 0 0 chr12 21488373 21488406 -99769124 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 748 827 303 22 22 chr12 21488423 21488700 -99768830 - B4A SINE B4 -8 284 8 1 748 363 279 139 67 chr12 21488732 21488897 -99768633 - MLT1C LTR MaLR -285 182 6 1 748 192 280 124 48 chr12 21488906 21489011 -99768519 - L4 LINE RTE -144 1885 1773 1 748 223 265 22 36 chr12 21489441 21489578 -99767952 + (CATATA)n Simple_repeat Simple_repeat 5 139 0 1 748 1635 178 75 75 chr12 21490004 21490388 -99767142 - ORR1C2 LTR MaLR 0 384 1 1 748 252 302 31 16 chr12 21490851 21490979 -99766551 + (CA)n Simple_repeat Simple_repeat 1 130 0 1 748 203 157 32 43 chr12 21490988 21491081 -99766449 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 1 748 441 0 0 0 chr12 21491140 21491189 -99766341 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 748 1484 54 5 5 chr12 21491544 21491729 -99765801 + B2_Mm1a SINE B2 2 186 -7 1 748 744 71 0 0 chr12 21492464 21492576 -99764954 + (TC)n Simple_repeat Simple_repeat 2 113 0 1 748 385 324 0 9 chr12 21492585 21492691 -99764839 - RSINE1 SINE B4 -57 108 4 1 748 187 79 53 0 chr12 21492910 21492948 -99764582 + (TAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 748 1036 212 29 14 chr12 21492969 21493179 -99764351 - B3 SINE B2 0 216 4 1 748 528 16 0 0 chr12 21494081 21494142 -99763388 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 1 748 817 248 58 84 chr12 21494188 21494413 -99763117 - ID_B1 SINE B4 -1 223 5 1 748 415 269 24 40 chr12 21494443 21494567 -99762963 - RSINE1 SINE B4 -26 139 18 1 748 403 211 70 50 chr12 21494625 21494780 -99762750 + MLT1A LTR MaLR 2 176 -214 1 748 1375 65 32 11 chr12 21494904 21495092 -99762438 - B2_Mm2 SINE B2 -2 193 2 1 748 944 149 229 0 chr12 21495122 21495297 -99762233 - B3 SINE B2 0 216 2 1 748 1271 27 0 7 chr12 21495636 21495784 -99761746 + B1_Mm SINE Alu 1 147 0 1 749 219 88 0 0 chr12 21496794 21496828 -99760702 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 749 365 371 23 11 chr12 21496861 21497038 -99760492 - B4A SINE B4 -7 285 107 1 749 1156 75 0 0 chr12 21497338 21497476 -99760054 + B1_Mus1 SINE Alu 3 140 -8 1 749 246 32 0 0 chr12 21497476 21497507 -99760023 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1 749 418 317 28 14 chr12 21497534 21497675 -99759855 + ORR1E LTR MaLR 1 143 -216 1 749 358 246 129 17 chr12 21498902 21499018 -99758512 - B4A SINE B4 -163 129 1 1 749 234 0 0 0 chr12 21499215 21499241 -99758289 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1 749 843 275 48 5 chr12 21499792 21500000 -99757530 + MTE2b LTR MaLR 1 217 -162 1 749 450 252 94 22 chr12 21500005 21500143 -99757387 + MTEa LTR MaLR 232 379 0 1 749 3067 66 10 12 chr12 21500222 21500623 -99756907 - MTB LTR MaLR 0 400 1 2 749 224 346 47 28 chr12 21500893 21501000 -99756530 - L2c LINE L2 -42 3345 3237 3 749 921 221 41 0 chr12 21501012 21501207 -99756323 + B3 SINE B2 1 203 -13 4 749 231 236 0 40 chr12 21501818 21501893 -99755637 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 749 1086 266 42 32 chr12 21501895 21502178 -99755352 - B4A SINE B4 -1 291 6 6 749 476 289 131 15 chr12 21502463 21502581 -99754949 + RSINE1 SINE B4 4 134 -31 7 749 333 0 0 0 chr12 21502581 21502618 -99754912 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 749 231 36 0 0 chr12 21502618 21502645 -99754885 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 749 476 289 131 15 chr12 21502645 21502662 -99754868 + RSINE1 SINE B4 135 155 -10 7 749 842 182 15 0 chr12 21505247 21505384 -99752146 + B1_Mur3 SINE Alu 2 140 -9 1 749 476 303 57 13 chr12 21505513 21505670 -99751860 - MER45A DNA Tip100 -12 166 3 1 749 657 212 15 0 chr12 21506084 21506216 -99751314 + MTEa LTR MaLR 1 134 -225 1 749 740 194 66 59 chr12 21506363 21506562 -99750968 + MTEa LTR MaLR 149 375 -4 1 749 1319 85 11 0 chr12 21506664 21506840 -99750690 + B2_Mm1t SINE B2 2 179 -14 1 749 520 85 333 19 chr12 21506872 21506980 -99750550 + B2_Mm2 SINE B2 47 188 -7 1 749 256 224 17 17 chr12 21507105 21507164 -99750366 + ORR1E LTR MaLR 1 59 -311 1 749 649 252 58 105 chr12 21507195 21507252 -99750278 + ORR1E LTR MaLR 60 111 -248 1 749 1266 152 35 48 chr12 21507252 21507480 -99750050 + URR1B DNA MER1_type 1 225 0 1 749 649 252 58 105 chr12 21507480 21507679 -99749851 + ORR1E LTR MaLR 112 304 -55 1 749 974 284 52 0 chr12 21507706 21507974 -99749556 - B4A SINE B4 -8 284 3 1 749 200 132 26 0 chr12 21508175 21508213 -99749317 + T-rich Low_complexity Low_complexity 2 40 0 1 749 221 30 61 0 chr12 21508228 21508261 -99749269 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1 749 270 322 80 14 chr12 21508422 21508586 -99748944 + MIR SINE MIR 29 249 -13 2 749 218 283 19 0 chr12 21508813 21508866 -99748664 + L2c LINE L2 3110 3163 -224 2 749 216 0 0 0 chr12 21509216 21509240 -99748290 + (A)n Simple_repeat Simple_repeat 1 24 0 2 749 436 279 86 33 chr12 21509342 21509494 -99748036 + RMER15 LTR ERVL 416 575 0 2 749 402 272 131 53 chr12 21509657 21509863 -99747667 + RMER15 LTR ERVL 338 559 -16 2 749 360 336 28 0 chr12 21510530 21510637 -99746893 - B1F SINE Alu -32 117 8 2 749 391 224 172 23 chr12 21510787 21510915 -99746615 - MLT1A1 LTR MaLR -4 404 258 2 749 249 276 7 14 chr12 21511114 21511261 -99746269 + (TG)n Simple_repeat Simple_repeat 1 146 0 2 749 830 169 0 7 chr12 21512829 21512978 -99744552 - B1_Mur4 SINE Alu -1 149 2 2 749 1371 90 5 0 chr12 21513659 21513848 -99743682 - B2_Mm1a SINE B2 -2 191 2 2 749 266 274 146 36 chr12 21514119 21514229 -99743301 + RMER15 LTR ERVL 325 446 -129 3 749 1572 182 107 10 chr12 21514263 21514573 -99742957 - MTD LTR MaLR -62 357 18 3 749 412 274 57 0 chr12 21514584 21514708 -99742822 + RMER15 LTR ERVL 443 573 -2 3 749 474 333 23 8 chr12 21514977 21515107 -99742423 - RSINE1 SINE B4 -6 159 28 3 749 518 95 11 0 chr12 21515108 21515203 -99742327 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 3 749 357 138 18 25 chr12 21515203 21515313 -99742217 - B2_Mm2 SINE B2 -1 194 47 3 749 1360 80 11 0 chr12 21515365 21515541 -99741989 - B2_Mm1t SINE B2 -14 179 2 3 749 450 0 0 0 chr12 21515632 21515682 -99741848 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 749 640 205 51 0 chr12 21516079 21516196 -99741334 + ETnERV2-int LTR ERVK 7070 7192 -214 3 749 243 291 47 86 chr12 21516465 21516593 -99740937 + RLTR9B LTR ERVK 314 436 -1 3 749 189 306 0 0 chr12 21516607 21516656 -99740874 - MIR SINE MIR -105 103 55 3 749 213 39 0 0 chr12 21517147 21517173 -99740357 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 749 295 306 35 35 chr12 21518384 21518499 -99739031 + MIRb SINE MIR 2 116 -152 4 749 220 324 165 16 chr12 21519048 21519236 -99738294 - L2b LINE L2 0 3375 3160 4 749 220 333 90 0 chr12 21519256 21519367 -99738163 - MIR3 SINE MIR -27 181 61 4 749 2128 209 71 84 chr12 21519703 21520237 -99737293 - MT2A LTR ERVL -6 527 1 4 749 234 62 0 0 chr12 21520465 21520497 -99737033 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 749 375 264 11 0 chr12 21520520 21520607 -99736923 - MLT1C LTR MaLR -313 154 67 4 749 701 209 34 0 chr12 21520600 21520748 -99736782 + MTEa LTR MaLR 227 379 0 4 749 1272 175 5 0 chr12 21520799 21521010 -99736520 - URR1B DNA MER1_type -13 212 1 4 749 1218 107 6 0 chr12 21521053 21521221 -99736309 + B2_Mm1t SINE B2 3 171 -22 4 749 308 77 435 10 chr12 21521243 21521346 -99736184 + B2_Mm2 SINE B2 34 180 -15 5 749 383 268 237 46 chr12 21521487 21521706 -99735824 + RMER15 LTR ERVL 300 560 -15 5 749 1404 158 47 194 chr12 21523686 21523892 -99733638 + ORR1C2 LTR MaLR 1 191 -193 5 749 816 59 246 0 chr12 21523892 21524010 -99733520 + B1_Mm SINE Alu 1 147 0 5 749 1404 158 47 194 chr12 21524010 21524251 -99733279 + ORR1C2 LTR MaLR 192 382 -2 5 749 282 178 0 0 chr12 21524260 21524350 -99733180 + GA-rich Low_complexity Low_complexity 52 141 0 5 749 438 92 236 22 chr12 21524353 21524442 -99733088 + B1_Mur3 SINE Alu 42 149 0 5 749 463 108 12 24 chr12 21524442 21524527 -99733003 + (GAAAA)n Simple_repeat Simple_repeat 3 86 0 5 749 834 181 0 20 chr12 21524594 21524741 -99732789 - B1_Mur4 SINE Alu -1 149 6 5 749 483 270 0 89 chr12 21524741 21524773 -99732757 - ID_B1 SINE B4 -1 223 61 5 749 220 329 41 0 chr12 21525482 21525555 -99731975 + BC1_Mm scRNA scRNA 6 81 -71 5 749 581 267 78 6 chr12 21525490 21525656 -99731874 + ID_B1 SINE B4 18 195 -29 6 749 460 271 0 63 chr12 21525679 21525805 -99731725 + RSINE1 SINE B4 44 161 -4 6 749 333 0 0 0 chr12 21525827 21525864 -99731666 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 749 441 0 0 0 chr12 21525864 21525912 -99731618 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 749 375 78 0 0 chr12 21525969 21526020 -99731510 - B1_Mus2 SINE Alu -22 125 75 6 749 21 36 0 0 chr12 21526024 21526052 -99731478 + AT_rich Low_complexity Low_complexity 1 28 0 6 749 1162 168 83 5 chr12 21526836 21527040 -99730490 - URR1B DNA MER1_type -1 224 5 6 749 263 264 87 144 chr12 21527337 21527510 -99730020 - RMER10A LTR ERVL -229 213 51 6 749 1338 225 29 11 chr12 21527548 21527827 -99729703 - B4 SINE B4 -8 284 1 6 749 236 311 245 20 chr12 21528183 21528334 -99729196 - MLT1H1 LTR MaLR -52 503 319 6 749 272 61 0 58 chr12 21528513 21528565 -99728965 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 7 749 206 339 181 35 chr12 21529071 21529242 -99728288 + MIRb SINE MIR 24 219 -49 7 749 902 304 10 10 chr12 21529251 21529540 -99727990 + B4 SINE B4 1 289 -3 7 749 1163 75 0 0 chr12 21529652 21529799 -99727731 + B1_Mus1 SINE Alu 2 148 0 7 749 1222 121 16 16 chr12 21529866 21530051 -99727479 - B2_Mm2 SINE B2 -10 185 1 7 749 877 193 0 0 chr12 21530086 21530236 -99727294 - B1_Mur4 SINE Alu 0 150 1 7 749 272 127 35 35 chr12 21530250 21530307 -99727223 - B3 SINE B2 0 216 160 7 749 1810 134 0 14 chr12 21530312 21530593 -99726937 + L1_Mm LINE L1 5516 5792 -91 7 749 558 199 29 185 chr12 21530598 21530771 -99726759 - B3A SINE B2 -52 146 1 7 749 853 344 61 3 chr12 21531035 21531330 -99726200 + MER115 DNA Tip100 368 679 -14 7 749 237 274 221 5 chr12 21531821 21531931 -99725599 + MIRc SINE MIR 36 166 -96 7 749 211 146 18 18 chr12 21532286 21532342 -99725188 + GA-rich Low_complexity Low_complexity 1 56 0 8 749 321 263 219 0 chr12 21533852 21533966 -99723564 + ID_B1 SINE B4 86 224 0 8 749 5448 164 42 17 chr12 21533993 21534991 -99722539 + RLTR13D2 LTR ERVK 1 1023 0 8 749 277 353 98 28 chr12 21536277 21536409 -99721121 + MLT1A LTR MaLR 1 145 -220 8 749 597 246 21 0 chr12 21536409 21536551 -99720979 + B1F2 SINE Alu 1 145 -4 8 749 364 276 579 32 chr12 21536551 21536690 -99720840 + MLT1A LTR MaLR 146 357 -17 8 749 347 277 143 0 chr12 21536686 21536805 -99720725 + MLT1C LTR MaLR 55 190 -277 8 749 234 306 42 0 chr12 21536884 21536956 -99720574 + MLT2C2 LTR ERVL 431 505 -54 8 749 715 253 89 6 chr12 21537117 21537148 -99720382 - B3A SINE B2 -1 197 165 8 749 423 0 0 0 chr12 21537148 21537195 -99720335 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 749 715 253 89 6 chr12 21537195 21537342 -99720188 - B3A SINE B2 -34 164 4 8 749 242 287 91 18 chr12 21537342 21537447 -99720083 + MamRep605 Unknown Unknown 180 292 -584 8 749 247 313 155 65 chr12 21537617 21537849 -99719681 + MamRep605 Unknown Unknown 570 822 -54 8 749 1979 98 88 0 chr12 21537965 21538250 -99719280 - MTC LTR MaLR -8 413 104 9 749 243 298 118 95 chr12 21538567 21538778 -99718752 + B4 SINE B4 42 257 -35 9 749 353 164 0 0 chr12 21538801 21538856 -99718674 - RMER30 DNA MER1_type -141 61 7 9 749 702 373 45 63 chr12 21538838 21539345 -99718185 - MLT2B3 LTR ERVL -56 498 1 9 749 236 240 39 26 chr12 21539474 21539551 -99717979 + L2 LINE L2 2116 2193 -1226 9 749 585 250 0 0 chr12 21539922 21540038 -99717492 - PB1D10 SINE Alu 0 117 2 9 749 251 236 9 86 chr12 21540129 21540245 -99717285 - L1M5 LINE L1 -949 5495 5389 9 749 376 296 27 27 chr12 21540316 21540427 -99717103 - PB1D10 SINE Alu -6 111 1 9 749 243 309 12 0 chr12 21540560 21540641 -99716889 - ID4_ SINE ID 0 83 2 9 749 330 235 12 36 chr12 21540646 21540730 -99716800 - L1M5 LINE L1 -2662 3484 3403 9 749 797 129 83 0 chr12 21540763 21540895 -99716635 + B1_Mus1 SINE Alu 1 143 -5 9 749 1083 209 24 5 chr12 21541307 21541519 -99716011 - B3 SINE B2 0 216 1 1 749 36873 63 2 9 chr12 21541539 21547536 -99709994 - L1Md_F2 LINE L1 0 6582 631 1 749 1104 114 0 0 chr12 21547547 21547714 -99709816 + (TTCTC)n Simple_repeat Simple_repeat 4 170 0 1 749 733 137 77 0 chr12 21547724 21547841 -99709689 - B1_Mm SINE Alu -21 126 1 1 749 395 237 67 67 chr12 21547748 21547852 -99709678 - MT2B LTR ERVL -344 257 154 1 749 746 206 0 0 chr12 21548231 21548367 -99709163 + B1_Mur4 SINE Alu 2 137 -13 1 749 308 64 0 21 chr12 21548369 21548417 -99709113 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 749 255 215 29 97 chr12 21548664 21548767 -99708763 + BC1_Mm scRNA scRNA 6 101 -51 1 749 705 183 0 15 chr12 21548835 21548968 -99708562 + B1_Mur3 SINE Alu 1 131 -18 1 749 583 135 248 23 chr12 21549641 21549770 -99707760 - MTC LTR MaLR -8 413 256 1 749 1775 155 3 14 chr12 21549938 21550220 -99707310 - MTC LTR MaLR -142 279 1 1 749 1281 122 11 0 chr12 21550824 21551013 -99706517 + B2_Mm1t SINE B2 3 193 0 1 749 212 59 29 0 chr12 21551520 21551554 -99705976 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 749 903 166 0 14 chr12 21551556 21551703 -99705827 - B1_Mur3 SINE Alu 0 149 5 1 749 253 278 0 122 chr12 21551837 21551960 -99705570 - MIRc SINE MIR -10 258 151 1 749 288 200 33 0 chr12 21551976 21552036 -99705494 - PB1D9 SINE Alu -2 118 57 1 749 295 247 0 0 chr12 21552062 21552147 -99705383 + (CACCC)n Simple_repeat Simple_repeat 5 89 0 1 749 27 73 0 0 chr12 21554617 21554672 -99702858 + AT_rich Low_complexity Low_complexity 1 55 0 1 749 569 163 163 0 chr12 21554829 21554952 -99702578 - B1_Mus2 SINE Alu 0 147 5 1 749 457 216 51 10 chr12 21555069 21555167 -99702363 - PB1D10 SINE Alu -1 116 15 1 749 236 338 52 0 chr12 21555103 21555180 -99702350 - B4A SINE B4 -125 167 87 1 749 27 62 0 0 chr12 21555260 21555308 -99702222 + AT_rich Low_complexity Low_complexity 1 48 0 1 749 781 183 21 7 chr12 21555319 21555462 -99702068 - B1_Mus2 SINE Alu -2 145 1 1 749 442 197 181 43 chr12 21556567 21556705 -99700825 - B3 SINE B2 -7 209 53 1 749 500 328 106 19 chr12 21557448 21557656 -99699874 + B4A SINE B4 1 226 -66 1 749 1188 61 42 0 chr12 21557659 21557824 -99699706 + B2_Mm2 SINE B2 1 172 -23 1 749 826 236 49 20 chr12 21557831 21558034 -99699496 + B3 SINE B2 2 210 -6 1 749 710 207 14 20 chr12 21558471 21558619 -99698911 + B1_Mur2 SINE Alu 3 149 0 1 749 463 136 0 12 chr12 21558826 21558908 -99698622 + B2_Mm2 SINE B2 3 83 -112 1 749 1955 187 42 12 chr12 21558909 21559310 -99698220 - MTC LTR MaLR -8 413 1 1 749 524 194 31 46 chr12 21559310 21559432 -99698098 + B2_Mm2 SINE B2 76 195 0 1 749 315 363 13 58 chr12 21559442 21559597 -99697933 + B1_Mur1 SINE Alu 2 149 0 1 749 340 269 29 22 chr12 21559609 21559746 -99697784 + (CATA)n Simple_repeat Simple_repeat 1 138 0 1 749 216 0 0 0 chr12 21560396 21560420 -99697110 + (T)n Simple_repeat Simple_repeat 1 24 0 1 749 1679 74 20 0 chr12 21560557 21560801 -99696729 - ORR1A2 LTR MaLR 0 327 79 1 749 6628 80 42 4 chr12 21560817 21562537 -99694993 + L1VL2 LINE L1 73 1845 -1770 1 749 257 299 23 0 chr12 21562664 21562751 -99694779 - PB1D10 SINE Alu -2 115 27 1 749 258 32 0 0 chr12 21562936 21562967 -99694563 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 749 1158 51 0 0 chr12 21562967 21563104 -99694426 - B1_Mm SINE Alu -10 137 1 1 749 531 0 0 0 chr12 21563571 21563630 -99693900 + (CTAA)n Simple_repeat Simple_repeat 3 61 0 1 749 1007 65 0 14 chr12 21563683 21563824 -99693706 + B1_Mm SINE Alu 9 147 0 1 749 182 91 30 0 chr12 21563824 21563857 -99693673 + (CAAAC)n Simple_repeat Simple_repeat 5 38 0 1 749 29 60 0 0 chr12 21563988 21564038 -99693492 + AT_rich Low_complexity Low_complexity 1 50 0 1 749 195 100 0 0 chr12 21564205 21564235 -99693295 + (TATATG)n Simple_repeat Simple_repeat 6 35 0 1 749 189 0 0 0 chr12 21564363 21564384 -99693146 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 1 749 1050 66 73 0 chr12 21564536 21564673 -99692857 - B1_Mus2 SINE Alu 0 147 1 1 749 24 0 0 0 chr12 21565801 21565825 -99691705 + AT_rich Low_complexity Low_complexity 1 24 0 1 749 3046 209 62 10 chr12 21565944 21566602 -99690928 - Lx5 LINE L1 -2 7048 6309 1 749 7163 172 50 4 chr12 21566596 21567947 -99689583 + Lx5 LINE L1 4466 5877 0 1 749 1224 77 6 0 chr12 21567968 21568137 -99689393 + B2_Mm1t SINE B2 2 171 -22 1 749 337 109 0 35 chr12 21568197 21568254 -99689276 + B2_Mm2 SINE B2 47 101 -94 1 749 23 33 0 0 chr12 21568269 21568299 -99689231 + AT_rich Low_complexity Low_complexity 1 30 0 1 749 928 251 34 11 chr12 21568299 21568561 -99688969 + Lx5 LINE L1 5893 6160 -890 1 749 5112 47 0 0 chr12 21569611 21570210 -99687320 - L1Md_F2 LINE L1 -30 5853 5255 1 749 5354 75 27 4 chr12 21570210 21570920 -99686610 + L1Md_F2 LINE L1 5853 6578 -4 1 749 3501 32 4 125 chr12 21570982 21571478 -99686052 + RLTR10C LTR ERVK 1 436 0 1 749 29 60 0 0 chr12 21572094 21572144 -99685386 + AT_rich Low_complexity Low_complexity 1 50 0 1 749 3072 72 2 7 chr12 21572190 21572597 -99684933 + L1Md_F2 LINE L1 6177 6581 -1 1 749 383 321 127 14 chr12 21572898 21573189 -99684341 + L1M2 LINE L1 4972 5295 -848 1 749 442 59 0 0 chr12 21573246 21573314 -99684216 - L1_Mus3 LINE L1 0 6638 6571 1 749 721 282 52 74 chr12 21573406 21573731 -99683799 + MTE2a LTR MaLR 3 320 -59 1 749 1050 103 14 0 chr12 21573844 21573989 -99683541 - B1_Mus1 SINE Alu -1 147 1 1 749 465 122 78 0 chr12 21574038 21574128 -99683402 + Lx4A LINE L1 6961 7057 -1 1 749 309 271 23 12 chr12 21574227 21574313 -99683217 + RLTR12B LTR ERVK 119 205 -323 1 749 460 241 40 40 chr12 21574414 21574591 -99682939 - ORR1E LTR MaLR -182 177 1 1 749 421 83 0 0 chr12 21574616 21574676 -99682854 - MTD LTR MaLR -359 60 1 1 749 779 219 93 0 chr12 21577342 21577547 -99679983 - MTD LTR MaLR 0 419 196 1 749 619 225 106 0 chr12 21577680 21577831 -99679699 - MTD LTR MaLR -235 184 18 1 749 13195 80 22 32 chr12 21577876 21580335 -99677195 - L1_Mus2 LINE L1 0 6566 4153 1 749 4287 28 28 0 chr12 21580335 21580842 -99676688 - L1Md_F3 LINE L1 0 6584 6064 1 749 13195 98 21 8 chr12 21580842 21580988 -99676542 - L1_Mus2 LINE L1 -1731 4152 3980 1 749 485 256 58 29 chr12 21581142 21581279 -99676251 + ID_B1 SINE B4 84 224 0 1 749 464 274 59 0 chr12 21581987 21582122 -99675408 - B1F SINE Alu 0 149 7 1 749 694 251 43 10 chr12 21582172 21582381 -99675149 - B3 SINE B2 0 216 1 1 749 327 104 0 0 chr12 21582422 21582470 -99675060 + (TCC)n Simple_repeat Simple_repeat 2 49 0 1 749 1159 71 0 0 chr12 21582471 21582612 -99674918 - B1_Mus1 SINE Alu -5 143 3 1 749 905 57 0 16 chr12 21582612 21582737 -99674793 + (TTCTC)n Simple_repeat Simple_repeat 4 126 0 1 749 805 193 0 0 chr12 21582740 21582875 -99674655 - B1_Mur3 SINE Alu -14 135 1 1 749 293 70 23 0 chr12 21582960 21583003 -99674527 - L1_Mm LINE L1 -427 5456 5413 1 749 3419 105 8 4 chr12 21583003 21583491 -99674039 + L1_Mus3 LINE L1 6143 6632 -6 1 749 323 315 47 69 chr12 21583648 21583924 -99673606 - L1M5 LINE L1 -2204 3942 3673 1 749 342 0 0 0 chr12 21583972 21584010 -99673520 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 749 279 0 0 0 chr12 21584011 21584042 -99673488 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 749 1129 49 21 7 chr12 21584553 21584698 -99672832 - B1_Mm SINE Alu 0 147 1 1 749 3252 90 4 17 chr12 21585797 21586261 -99671269 - L1_Mus3 LINE L1 -5 6633 6176 1 749 738 32 0 0 chr12 21586890 21586983 -99670547 + (TCTCTG)n Simple_repeat Simple_repeat 2 94 0 1 749 303 28 0 0 chr12 21586985 21587021 -99670509 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 749 1162 283 28 3 chr12 21587046 21587372 -99670158 - MLT2C2 LTR ERVL -130 334 1 1 749 732 269 16 45 chr12 21587391 21587612 -99669918 - B3A SINE B2 0 216 6 1 749 948 65 0 0 chr12 21587625 21587749 -99669781 + (TCC)n Simple_repeat Simple_repeat 3 126 0 1 749 766 266 99 71 chr12 21587764 21588198 -99669332 - L1M4 LINE L1 -1107 5039 4594 1 749 1678 183 101 41 chr12 21588198 21588613 -99668917 - RMER16 LTR ERVK 0 533 94 1 749 251 264 13 65 chr12 21588690 21588767 -99668763 + ID4 SINE ID 2 74 -9 1 749 1055 180 26 0 chr12 21588704 21588893 -99668637 + B3 SINE B2 13 206 -10 1 749 247 277 108 0 chr12 21588902 21589032 -99668498 - L1MA8 LINE L1 -11 6280 6137 1 749 741 203 35 14 chr12 21589187 21589332 -99668198 - B1_Mur4 SINE Alu -1 149 2 1 749 1134 209 23 19 chr12 21589358 21589573 -99667957 - B3 SINE B2 0 216 1 1 749 897 268 57 79 chr12 21589663 21590032 -99667498 - MTE2a LTR MaLR -2 377 17 1 749 452 218 62 18 chr12 21590137 21590249 -99667281 - B1_Mur2 SINE Alu 0 149 33 1 749 2817 53 0 12 chr12 21590515 21590861 -99666669 + ORR1A1 LTR MaLR 1 342 -4 1 749 11553 78 23 14 chr12 21590865 21592254 -99665276 + ORR1A1-int LTR MaLR 1 1387 -405 1 749 1393 72 39 0 chr12 21592254 21592435 -99665095 + B2_Mm2 SINE B2 2 189 -6 1 749 11553 78 23 14 chr12 21592435 21592769 -99664761 + ORR1A1-int LTR MaLR 1388 1746 -46 1 749 4443 16 0 12 chr12 21592769 21593268 -99664262 + MT2_Mm LTR ERVL 1 493 0 1 749 11553 78 23 14 chr12 21593268 21593319 -99664211 + ORR1A1-int LTR MaLR 1747 1792 0 1 749 2789 58 3 6 chr12 21593319 21593666 -99663864 + ORR1A1 LTR MaLR 1 346 0 1 749 24 32 0 0 chr12 21593706 21593737 -99663793 + AT_rich Low_complexity Low_complexity 1 31 0 1 749 339 44 0 0 chr12 21593775 21593820 -99663710 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 749 414 296 86 29 chr12 21593822 21593961 -99663569 - B1F1 SINE Alu -1 148 2 1 749 495 307 13 0 chr12 21594018 21594168 -99663362 + ID_B1 SINE B4 71 222 -2 1 749 624 234 21 0 chr12 21594170 21594311 -99663219 + ID_B1 SINE B4 80 223 -1 2 749 192 200 43 0 chr12 21594551 21594621 -99662909 + GA-rich Low_complexity Low_complexity 2 74 0 2 749 1178 82 0 0 chr12 21594693 21594840 -99662690 + B1_Mus2 SINE Alu 1 147 0 2 749 196 102 41 0 chr12 21594855 21594904 -99662626 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 2 749 2280 155 12 26 chr12 21594990 21595407 -99662123 - RMER17B LTR ERVK -4 954 544 2 749 535 279 17 75 chr12 21595580 21595754 -99661776 - RSINE1 SINE B4 0 165 2 2 749 246 62 0 0 chr12 21595890 21595922 -99661608 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 749 441 345 0 7 chr12 21595926 21596069 -99661461 - RSINE1 SINE B4 -22 143 2 2 749 22 35 0 0 chr12 21596073 21596102 -99661428 + AT_rich Low_complexity Low_complexity 1 29 0 2 749 37796 66 5 3 chr12 21596235 21602417 -99655113 - L1_Mus3 LINE L1 -2 6636 483 2 749 468 0 0 0 chr12 21603825 21603877 -99653653 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 749 315 257 35 52 chr12 21604018 21604125 -99653405 + PB1D10 SINE Alu 5 110 -7 2 749 222 91 0 0 chr12 21604125 21604158 -99653372 + (CGAAA)n Simple_repeat Simple_repeat 3 35 0 2 749 797 149 0 84 chr12 21606461 21606615 -99650915 + B1_Mur4 SINE Alu 1 141 -9 2 749 240 86 0 0 chr12 21606634 21606669 -99650861 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 2 749 288 120 0 0 chr12 21606688 21606738 -99650792 + (GGGAGA)n Simple_repeat Simple_repeat 3 52 0 2 749 181 118 88 0 chr12 21606738 21606772 -99650758 - MIRm SINE MIR -107 169 133 2 749 725 244 62 0 chr12 21606955 21607164 -99650366 + ID_B1 SINE B4 2 223 -1 2 749 188 67 0 32 chr12 21607232 21607263 -99650267 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 749 453 200 0 0 chr12 21607267 21607357 -99650173 - B1_Mur4 SINE Alu -21 129 40 2 749 465 254 9 9 chr12 21608500 21608615 -99648915 - ID_B1 SINE B4 -7 217 103 2 749 244 282 39 0 chr12 21608545 21608623 -99648907 - PB1D9 SINE Alu -26 94 14 2 749 736 250 58 19 chr12 21608987 21609195 -99648335 + ID_B1 SINE B4 2 217 -7 2 749 3330 42 10 7 chr12 21610038 21610448 -99647082 + IAPLTR2a LTR ERVK 1 411 0 2 749 4047 84 32 37 chr12 21610449 21611273 -99646257 + IAPEz-int LTR ERVK 9 662 -5819 2 749 2774 64 0 3 chr12 21611273 21611616 -99645914 + IAPEz-int LTR ERVK 1359 1700 -4781 2 749 6486 66 12 7 chr12 21611609 21612434 -99645096 + IAPEz-int LTR ERVK 5651 6479 -2 2 749 3327 44 10 7 chr12 21612436 21612846 -99644684 + IAPLTR2a LTR ERVK 1 411 0 2 749 432 0 0 0 chr12 21613000 21613048 -99644482 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 749 357 43 0 0 chr12 21613048 21613095 -99644435 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 749 207 176 0 0 chr12 21613247 21613281 -99644249 + CT-rich Low_complexity Low_complexity 4 37 0 2 749 261 57 0 0 chr12 21613281 21613316 -99644214 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 2 749 452 205 157 33 chr12 21613324 21613445 -99644085 - B1_Mur2 SINE Alu -13 136 1 2 749 782 228 83 0 chr12 21613470 21613663 -99643867 - B3 SINE B2 -5 211 3 2 749 249 254 150 71 chr12 21613959 21614086 -99643444 - MLT1F1 LTR MaLR -292 277 141 2 749 207 186 0 0 chr12 21614108 21614151 -99643379 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 2 749 432 116 0 34 chr12 21614530 21614619 -99642911 + (TCCCC)n Simple_repeat Simple_repeat 2 87 0 2 749 765 300 77 62 chr12 21615417 21615461 -99642069 + MTE2b LTR MaLR 1 41 -338 2 749 614 198 161 63 chr12 21615461 21615666 -99641864 - URR1A DNA MER1_type -1 225 1 2 749 765 285 51 54 chr12 21615666 21615946 -99641584 + MTE2b LTR MaLR 42 379 0 2 749 290 250 0 29 chr12 21616441 21616511 -99641019 + MT2A LTR ERVL 9 76 -457 2 749 240 338 71 14 chr12 21616789 21616930 -99640600 + RMER15 LTR ERVL 416 564 -11 2 749 983 142 166 16 chr12 21617423 21617616 -99639914 + URR1B DNA MER1_type 4 225 0 2 749 796 317 69 29 chr12 21617900 21618176 -99639354 - B4A SINE B4 0 292 6 2 749 241 313 97 50 chr12 21618194 21618453 -99639077 - L1MD2 LINE L1 -5 6354 6084 2 749 265 296 77 51 chr12 21618949 21619145 -99638385 + Lx8 LINE L1 6782 6982 -491 2 749 298 325 8 41 chr12 21620038 21620160 -99637370 + MIRb SINE MIR 2 119 -149 2 749 326 312 28 0 chr12 21620167 21620276 -99637254 - PB1D7 SINE Alu -6 114 3 2 749 240 335 72 36 chr12 21620464 21620659 -99636871 - L2c LINE L2 -223 3164 2963 2 749 787 225 31 18 chr12 21620663 21620826 -99636704 + B3A SINE B2 4 168 -30 2 749 586 235 29 40 chr12 21621393 21621582 -99635948 - B3 SINE B2 0 195 15 2 749 442 284 22 22 chr12 21621613 21621750 -99635780 - B1F1 SINE Alu 0 149 13 2 749 414 208 0 0 chr12 21621741 21621813 -99635717 - RSINE1 SINE B4 -38 127 56 2 749 338 266 0 0 chr12 21621827 21621906 -99635624 - PB1D10 SINE Alu -7 110 32 2 749 597 107 0 0 chr12 21621981 21622065 -99635465 + B2_Mm2 SINE B2 3 86 -109 2 749 762 11 0 0 chr12 21622065 21622152 -99635378 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 749 2368 128 2 134 chr12 21622229 21622700 -99634830 + RLTR9E LTR ERVK 1 409 0 2 93 17118 207 39 31 chr12 21622701 21628462 -99629068 + ETnERV2-int LTR ERVK 2 6429 -977 2 750 450 132 0 26 chr12 21628672 21628750 -99628780 + ETnERV2-int LTR ERVK 7331 7406 0 2 750 2588 130 5 2 chr12 21628750 21629152 -99628378 + RLTR9E LTR ERVK 1 403 -6 2 750 246 235 0 0 chr12 21630004 21630085 -99627445 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 750 22 0 0 0 chr12 21630131 21630153 -99627377 + AT_rich Low_complexity Low_complexity 1 22 0 2 750 1453 11 0 11 chr12 21630850 21631027 -99626503 + (TCTCC)n Simple_repeat Simple_repeat 2 176 0 2 750 348 64 0 0 chr12 21631027 21631074 -99626456 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 750 204 97 0 0 chr12 21631074 21631105 -99626425 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 750 322 303 48 48 chr12 21631127 21631231 -99626299 - RSINE1 SINE B4 -28 137 34 2 750 765 243 122 88 chr12 21631338 21631649 -99625881 - MTE2a LTR MaLR -14 365 44 2 750 1298 183 0 4 chr12 21631649 21631874 -99625656 - URR1B DNA MER1_type -1 224 1 2 750 886 145 27 7 chr12 21631905 21632051 -99625479 + B1_Mur4 SINE Alu 1 149 -1 2 750 833 196 99 11 chr12 21632084 21632275 -99625255 + B3 SINE B2 3 210 -6 2 750 34 0 0 0 chr12 21632284 21632318 -99625212 + AT_rich Low_complexity Low_complexity 1 34 0 2 750 256 167 83 0 chr12 21632322 21632370 -99625160 - MTE2a LTR MaLR -327 52 1 2 750 583 231 17 0 chr12 21633474 21633591 -99623939 + MTC LTR MaLR 1 119 -302 2 750 282 164 0 0 chr12 21633591 21633646 -99623884 + CT-rich Low_complexity Low_complexity 1 55 0 2 750 330 26 0 0 chr12 21633654 21633693 -99623837 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 2 750 575 211 61 30 chr12 21633693 21633825 -99623705 - B1_Mur3 SINE Alu -12 137 2 2 750 1925 150 26 7 chr12 21633828 21634136 -99623394 + MTC LTR MaLR 108 421 0 2 750 226 312 81 18 chr12 21634141 21634252 -99623278 - MIRb SINE MIR -128 140 23 2 750 241 316 0 26 chr12 21634866 21634944 -99622586 + MER2 DNA MER2_type 7 82 -263 2 750 688 250 0 0 chr12 21635085 21635209 -99622321 - RSINE1 SINE B4 -39 126 3 2 750 645 253 55 30 chr12 21635437 21635637 -99621893 - B4A SINE B4 -86 206 2 2 750 724 108 0 26 chr12 21636458 21636572 -99620958 - URR1B DNA MER1_type 0 225 115 2 750 1134 88 0 0 chr12 21636560 21636708 -99620822 - RLTR10D LTR ERVK -211 148 1 2 750 13016 59 0 1 chr12 21636708 21638282 -99619248 - IAP-d-int LTR ERVK 0 6542 4971 2 750 8086 64 23 25 chr12 21638281 21639339 -99618191 - IAP-d-int LTR ERVK -5486 1056 1 2 750 2418 125 0 45 chr12 21639339 21639715 -99617815 - RLTR10D LTR ERVK 0 359 1 2 750 361 244 77 17 chr12 21639715 21639832 -99617698 - ID_B1 SINE B4 -27 197 74 2 750 841 82 16 0 chr12 21639857 21639979 -99617551 - B1_Mm SINE Alu 0 147 24 2 750 685 253 37 27 chr12 21640056 21640243 -99617287 - B3 SINE B2 0 216 28 2 750 453 234 9 27 chr12 21640434 21640544 -99616986 + PB1D9 SINE Alu 13 120 0 2 750 380 130 14 0 chr12 21641260 21641329 -99616201 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 2 750 387 0 0 0 chr12 21642314 21642357 -99615173 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 750 30155 69 45 26 chr12 21642770 21647140 -99610390 + L1Md_F LINE L1 392 4902 -981 2 750 230 288 61 53 chr12 21647140 21647272 -99610258 - MER72B LTR ERV1 -356 412 280 2 750 30155 69 45 26 chr12 21647272 21647933 -99609597 + L1Md_F LINE L1 4903 5586 -297 2 750 8259 40 2 3 chr12 21647933 21648918 -99608612 + L1Md_F2 LINE L1 5587 6570 -12 2 750 2166 211 15 41 chr12 21649646 21650121 -99607409 + RLTR1D LTR ERV1 135 605 0 2 750 506 214 32 36 chr12 21650184 21650372 -99607158 + MMERGLN-int LTR ERV1 95 336 -7220 2 750 25020 242 21 22 chr12 21650369 21657446 -99600084 + MMERGLN-int LTR ERV1 572 7778 0 2 750 2270 191 17 41 chr12 21657523 21657983 -99599547 + RLTR1D LTR ERV1 157 605 0 2 750 252 175 0 0 chr12 21659242 21659305 -99598225 + CT-rich Low_complexity Low_complexity 1 63 0 2 750 1025 199 32 0 chr12 21659519 21659735 -99597795 + URR1B DNA MER1_type 2 224 -1 2 750 215 73 0 47 chr12 21660363 21660406 -99597124 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 750 528 266 37 19 chr12 21660430 21660591 -99596939 + RSINE1 SINE B4 1 164 -1 2 750 333 0 0 0 chr12 21661285 21661322 -99596208 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 750 2229 82 0 81 chr12 21661334 21661678 -99595852 - ORR1A2 LTR MaLR -11 316 1 2 750 247 294 0 0 chr12 21661678 21661746 -99595784 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 750 919 156 0 0 chr12 21661832 21661967 -99595563 - B1_Mur4 SINE Alu -13 137 3 2 750 464 311 55 0 chr12 21662011 21662175 -99595355 - B3A SINE B2 -24 174 2 2 750 643 303 10 67 chr12 21662192 21662401 -99595129 - B4A SINE B4 -72 220 24 2 750 230 239 14 69 chr12 21662346 21662418 -99595112 - ID2 SINE ID -9 74 7 2 750 857 212 28 42 chr12 21663305 21663522 -99594008 - ID_B1 SINE B4 -8 216 3 2 750 821 167 7 20 chr12 21663551 21663698 -99593832 - B1_Mur4 SINE Alu -5 145 1 2 750 306 250 150 0 chr12 21663700 21663780 -99593750 - PB1D10 SINE Alu -14 103 12 2 750 186 286 154 43 chr12 21664337 21664454 -99593076 + MIRc SINE MIR 14 143 -125 2 750 196 313 75 38 chr12 21665568 21665701 -99591829 + L2a LINE L2 3098 3235 -191 2 750 2596 58 62 0 chr12 21667089 21667379 -99590151 + IAPLTR4 LTR ERVK 1 290 -55 3 750 413 19 0 18 chr12 21667379 21667434 -99590096 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 750 2596 58 62 0 chr12 21667434 21667468 -99590062 + IAPLTR4 LTR ERVK 291 343 -2 3 750 711 156 8 23 chr12 21667473 21667604 -99589926 + IAPLTR3-int LTR ERVK 7 135 -6686 3 750 730 221 44 68 chr12 21667603 21667855 -99589675 + IAPLTR3-int LTR ERVK 821 1066 -5755 3 750 639 140 159 93 chr12 21667957 21668243 -99589287 + ETnERV2-int LTR ERVK 2175 2307 -4937 3 750 306 265 48 12 chr12 21668278 21668362 -99589168 + RLTR19-int LTR ERVK 733 819 -4587 3 750 481 212 88 0 chr12 21668367 21668480 -99589050 + RLTR19-int LTR ERVK 938 1060 -5077 3 750 680 229 374 25 chr12 21668493 21668715 -99588815 + ETnERV2-int LTR ERVK 2454 2753 -4653 3 750 3263 151 154 2 chr12 21668741 21669353 -99588177 + ETnERV2-int LTR ERVK 3567 4271 -3135 3 750 465 204 12 35 chr12 21669358 21669483 -99588047 + MMETn-int LTR ERVK 2357 2464 -2380 3 750 815 106 33 53 chr12 21669495 21669645 -99587885 + MMERVK10C-int LTR ERVK 4530 4676 -2905 3 750 3435 83 0 18 chr12 21669892 21670343 -99587187 + MMERVK10C-int LTR ERVK 5203 5645 -1936 3 750 3483 86 0 4 chr12 21670331 21670787 -99586743 + MMERVK10C-int LTR ERVK 5761 6214 -1367 3 750 4508 206 9 14 chr12 21670770 21671649 -99585881 + IAPLTR3-int LTR ERVK 5927 6801 -20 3 750 2617 50 62 0 chr12 21671649 21671939 -99585591 + IAPLTR4 LTR ERVK 1 290 -55 3 750 233 29 0 29 chr12 21671939 21671974 -99585556 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 750 2617 50 62 0 chr12 21671974 21672004 -99585526 + IAPLTR4 LTR ERVK 291 339 -6 3 750 408 200 24 12 chr12 21672519 21672686 -99584844 + (TG)n Simple_repeat Simple_repeat 1 169 0 3 750 544 157 20 13 chr12 21672737 21672886 -99584644 + (TG)n Simple_repeat Simple_repeat 1 150 0 3 750 306 0 0 0 chr12 21673112 21673146 -99584384 + (TAA)n Simple_repeat Simple_repeat 2 35 0 3 750 205 167 27 14 chr12 21673192 21673265 -99584265 + A-rich Low_complexity Low_complexity 5 78 0 3 750 207 25 24 48 chr12 21673322 21673364 -99584166 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 750 531 287 71 74 chr12 21673364 21673458 -99584072 - RLTR11A2 LTR ERVK -98 429 334 3 750 1186 68 0 0 chr12 21673458 21673605 -99583925 - B1_Mm SINE Alu 0 147 1 3 750 531 287 71 74 chr12 21673605 21673807 -99583723 - RLTR11A2 LTR ERVK -194 333 134 3 750 510 61 0 0 chr12 21673989 21674055 -99583475 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 3 750 378 181 21 0 chr12 21674059 21674203 -99583327 + (TA)n Simple_repeat Simple_repeat 1 147 0 3 750 194 105 26 0 chr12 21674235 21674273 -99583257 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 3 750 670 211 52 8 chr12 21674346 21674515 -99583015 + Lx2B LINE L1 6625 6800 -176 3 750 29 60 0 0 chr12 21674531 21674581 -99582949 + AT_rich Low_complexity Low_complexity 1 50 0 3 750 192 77 0 0 chr12 21674581 21674607 -99582923 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 750 603 39 0 0 chr12 21674608 21674686 -99582844 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 750 2268 244 76 24 chr12 21675297 21676366 -99581164 + L1_Mur3 LINE L1 1062 2127 -3753 3 750 886 145 28 0 chr12 21676514 21676659 -99580871 - B1_Mur4 SINE Alu 0 150 2 3 750 275 213 0 74 chr12 21676960 21677041 -99580489 - ORR1B1 LTR MaLR -18 376 302 3 750 239 278 27 27 chr12 21677185 21677296 -99580234 - MMSAT4 Satellite Satellite -23 145 35 3 750 414 299 77 47 chr12 21677245 21677620 -99579910 - MurSatRep1 Unknown Unknown 0 2137 1752 3 750 3008 82 0 5 chr12 21677636 21678042 -99579488 - L1_Mus1 LINE L1 -1 6566 6163 3 750 452 311 59 33 chr12 21678046 21678092 -99579438 - MurSatRep1 Unknown Unknown 0 2137 1991 3 750 414 272 22 22 chr12 21678092 21678231 -99579299 - MMSAT4 Satellite Satellite 0 168 30 3 750 452 311 59 33 chr12 21678231 21678260 -99579270 - MurSatRep1 Unknown Unknown -147 1990 1899 3 750 458 257 22 22 chr12 21678260 21678399 -99579131 - MMSAT4 Satellite Satellite 0 168 30 3 750 452 311 59 33 chr12 21678399 21678459 -99579071 - MurSatRep1 Unknown Unknown 0 1898 1691 3 750 9416 193 36 29 chr12 21678597 21679597 -99577933 - MurSatRep1 Unknown Unknown -3 2134 1127 3 750 1347 88 6 0 chr12 21679597 21679778 -99577752 + B2_Mm1a SINE B2 2 183 -10 3 750 9416 193 36 29 chr12 21679778 21680894 -99576636 - MurSatRep1 Unknown Unknown -1011 1126 2 3 750 267 252 25 42 chr12 21681313 21681433 -99576097 + Lx4B LINE L1 6937 7054 -4 3 750 1275 311 39 69 chr12 21681534 21682257 -99575273 - ORR1B1-int LTR MaLR -108 1262 562 3 750 5905 234 18 11 chr12 21682267 21683675 -99573855 + Lx4B LINE L1 5637 7054 -4 3 750 895 117 0 33 chr12 21683682 21683833 -99573697 + B1_Mus2 SINE Alu 1 146 -1 3 750 390 359 19 14 chr12 21683961 21684170 -99573360 - ORR1B1-int LTR MaLR -1107 263 54 3 750 321 68 0 0 chr12 21684215 21684259 -99573271 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 750 291 325 126 16 chr12 21684271 21684462 -99573068 - MTD LTR MaLR -16 403 192 3 750 1658 176 101 6 chr12 21684464 21684538 -99572992 + RLTR9D LTR ERVK 1 74 -329 3 750 3026 57 23 5 chr12 21684538 21684927 -99572603 - MTA_Mm LTR MaLR 0 396 1 3 750 1658 176 101 6 chr12 21684927 21685218 -99572312 + RLTR9D LTR ERVK 75 400 -3 3 750 349 360 52 16 chr12 21685218 21685410 -99572120 - MTD LTR MaLR -206 213 15 3 750 376 263 47 6 chr12 21687510 21687682 -99569848 + L1_Mur3 LINE L1 904 1082 -6646 3 750 427 279 79 0 chr12 21688009 21688238 -99569292 + L1_Mur3 LINE L1 1314 1560 -4317 3 750 473 234 9 117 chr12 21688252 21688465 -99569065 + L1_Mur3 LINE L1 1647 1836 -4044 3 750 1189 88 6 0 chr12 21688972 21689143 -99568387 - B2_Mm1a SINE B2 -21 172 1 3 750 245 194 153 0 chr12 21689638 21689710 -99567820 + MER5A1 DNA MER1_type 13 95 -71 3 750 454 283 35 128 chr12 21689939 21690166 -99567364 - ID_B1 SINE B4 -17 207 2 3 750 291 332 62 17 chr12 21690171 21690388 -99567142 - L2b LINE L2 -184 3242 3013 3 750 540 263 91 54 chr12 21691075 21691316 -99566214 + B4A SINE B4 5 254 -38 3 750 343 55 18 18 chr12 21691345 21691400 -99566130 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 750 279 116 0 0 chr12 21691941 21691984 -99565546 - MTC LTR MaLR -287 134 92 3 750 1294 211 93 83 chr12 21692207 21692251 -99565279 - MTD LTR MaLR -2 417 377 3 750 692 182 33 53 chr12 21692251 21692402 -99565128 + B1_Mus1 SINE Alu 1 148 0 3 750 1294 211 93 83 chr12 21692402 21692755 -99564775 - MTD LTR MaLR -43 376 16 3 750 648 31 21 10 chr12 21692898 21692994 -99564536 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 3 750 567 272 0 13 chr12 21693162 21693311 -99564219 + B1_Mm SINE Alu 1 147 0 3 750 349 200 0 0 chr12 21693751 21693811 -99563719 - B3 SINE B2 -87 129 70 3 750 395 85 0 0 chr12 21694071 21694130 -99563400 - RMER6D LTR ERVK -661 59 1 3 750 497 278 71 0 chr12 21694503 21694629 -99562901 + RSINE1 SINE B4 21 155 -10 3 750 2315 137 16 45 chr12 21694916 21695343 -99562187 + MTC LTR MaLR 1 415 -6 3 750 1321 116 16 0 chr12 21695973 21696162 -99561368 - B2_Mm2 SINE B2 -3 192 1 3 750 347 213 13 39 chr12 21696253 21696331 -99561199 - RSINE1 SINE B4 -40 125 50 3 750 958 174 0 0 chr12 21696418 21696562 -99560968 + B1_Mur1 SINE Alu 3 146 -3 3 750 283 292 217 53 chr12 21696792 21697110 -99560420 + ORR1E LTR MaLR 1 370 0 3 750 459 0 0 0 chr12 21697272 21697323 -99560207 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 750 336 225 14 14 chr12 21697538 21697610 -99559920 - ID2 SINE ID -10 73 2 3 750 195 146 0 0 chr12 21698100 21698141 -99559389 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 3 750 23 68 0 0 chr12 21698166 21698210 -99559320 + AT_rich Low_complexity Low_complexity 1 44 0 3 750 1279 104 16 0 chr12 21698300 21698492 -99559038 - B2_Mm2 SINE B2 0 195 1 3 750 469 277 18 0 chr12 21698498 21698610 -99558920 - RSINE1 SINE B4 -49 116 3 3 750 505 208 20 0 chr12 21698818 21698919 -99558611 - B1_Mur2 SINE Alu -40 109 7 3 750 410 222 147 91 chr12 21698930 21699128 -99558402 - B3 SINE B2 0 216 8 3 750 492 261 91 33 chr12 21699798 21700008 -99557522 + ID_B1 SINE B4 3 224 0 3 750 1537 254 45 2 chr12 21701044 21701442 -99556088 - MTD LTR MaLR -3 416 2 3 750 228 345 35 0 chr12 21701442 21701558 -99555972 + RMER15 LTR ERVL 440 559 -16 3 750 1098 298 25 33 chr12 21701735 21701818 -99555712 - ORR1D2 LTR MaLR -8 362 275 3 750 3147 32 2 230 chr12 21701818 21702383 -99555147 - RLTR10C LTR ERVK 0 436 1 3 750 1098 298 25 33 chr12 21702383 21702630 -99554900 - ORR1D2 LTR MaLR -96 274 32 3 750 1198 139 80 14 chr12 21702630 21702842 -99554688 + URR1A DNA MER1_type 1 226 0 3 750 1098 298 25 33 chr12 21702842 21702875 -99554655 - ORR1D2 LTR MaLR -339 31 2 3 750 6875 83 24 22 chr12 21703771 21704866 -99552664 + MuRRS-int LTR ERV1 143 1510 -3180 3 750 18606 71 2 27 chr12 21704861 21707305 -99550225 + MuRRS-int LTR ERV1 2308 4690 0 3 750 4583 67 5 2 chr12 21707305 21707890 -99549640 + LTRIS_Mus LTR ERV1 1 587 0 3 750 1226 215 161 6 chr12 21708207 21708530 -99549000 + ORR1D1 LTR MaLR 1 373 -1 3 750 577 253 13 40 chr12 21708557 21708709 -99548821 + B1F SINE Alu 2 149 0 3 750 330 267 21 32 chr12 21708908 21709001 -99548529 + PB1D10 SINE Alu 13 104 -13 3 750 739 137 206 149 chr12 21709456 21709589 -99547941 - URR1A DNA MER1_type 0 226 113 3 750 1014 125 0 0 chr12 21709589 21709733 -99547797 - B1_Mm SINE Alu -3 144 1 3 750 739 137 206 149 chr12 21709733 21709813 -99547717 - URR1A DNA MER1_type -114 112 1 3 750 339 305 0 0 chr12 21709859 21709964 -99547566 + (TCCA)n Simple_repeat Simple_repeat 3 107 0 3 750 723 252 29 29 chr12 21710234 21710438 -99547092 + B3 SINE B2 2 205 -11 3 750 1542 192 85 6 chr12 21710969 21711335 -99546195 - MTD LTR MaLR 0 419 25 3 750 3638 237 57 56 chr12 21711348 21712504 -99545026 - MTD-int LTR MaLR -6 1252 96 3 750 286 259 34 77 chr12 21712574 21712637 -99544893 - PB1D10 SINE Alu -1 116 52 3 750 952 131 14 0 chr12 21712637 21712782 -99544748 + B1_Mus1 SINE Alu 1 147 -1 3 750 286 259 34 77 chr12 21712782 21712835 -99544695 - PB1D10 SINE Alu -66 51 5 3 750 272 239 104 0 chr12 21712795 21712862 -99544668 - ID_B1 SINE B4 -99 125 52 3 750 872 290 13 0 chr12 21712998 21713222 -99544308 + MTEa LTR MaLR 1 227 -152 3 750 188 98 195 0 chr12 21713433 21713474 -99544056 + L3 LINE CR1 915 963 -3526 3 750 2056 180 33 14 chr12 21713495 21713957 -99543573 - RLTR1 LTR ERV1 0 624 132 3 750 299 283 43 21 chr12 21714704 21714845 -99542685 - MLT1N2 LTR MaLR -5 557 414 3 750 381 241 91 78 chr12 21715362 21715592 -99541938 + RMER10A LTR ERVL 66 298 -144 3 750 468 91 0 0 chr12 21715593 21715659 -99541871 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 3 750 494 241 115 20 chr12 21715922 21716070 -99541460 - RSINE1 SINE B4 -2 163 2 3 750 6142 67 33 4 chr12 21716575 21717360 -99540170 + RLTR13C2 LTR ERVK 1 808 0 3 750 751 183 41 25 chr12 21717479 21717674 -99539856 + MTD LTR MaLR 1 213 -208 3 750 753 281 28 28 chr12 21717674 21717890 -99539640 + B3 SINE B2 1 216 0 3 750 862 223 39 19 chr12 21717908 21718114 -99539416 + MTD LTR MaLR 196 405 -14 3 750 736 158 0 67 chr12 21718500 21718649 -99538881 + B1_Mus1 SINE Alu 10 148 0 3 750 230 175 36 36 chr12 21718651 21718734 -99538796 + (CAAA)n Simple_repeat Simple_repeat 1 83 0 3 750 540 253 90 72 chr12 21718742 21718908 -99538622 + B3 SINE B2 2 170 -46 3 750 378 0 0 0 chr12 21719006 21719048 -99538482 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 750 662 247 24 0 chr12 21719058 21719224 -99538306 - B3A SINE B2 -28 170 1 3 750 285 364 14 0 chr12 21719241 21719384 -99538146 + L1MD LINE L1 5422 5566 -2429 4 750 1173 183 180 140 chr12 21719385 21719829 -99537701 + MT2A LTR ERVL 1 462 -71 4 750 3877 71 0 56 chr12 21719939 21720327 -99537203 - RLTR1B LTR ERV1 -2 510 145 4 750 1193 68 0 0 chr12 21720327 21720473 -99537057 - B1_Mus2 SINE Alu 0 147 2 4 750 3877 71 0 56 chr12 21720473 21720624 -99536906 - RLTR1B LTR ERV1 -368 144 1 4 750 797 98 8 8 chr12 21720624 21720757 -99536773 - RMER17D2 LTR ERVK -4 805 673 4 750 792 76 34 0 chr12 21720760 21720878 -99536652 - RMER17D2 LTR ERVK -687 122 1 4 750 370 283 177 0 chr12 21720885 21720998 -99536532 + RSINE1 SINE B4 4 136 -29 4 750 548 343 37 0 chr12 21721048 21721264 -99536266 + L1MD LINE L1 5597 5820 -539 4 750 459 0 0 0 chr12 21721316 21721367 -99536163 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 750 501 17 0 0 chr12 21721367 21721424 -99536106 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 750 1002 116 0 0 chr12 21721497 21721635 -99535895 - B1_Mus1 SINE Alu -10 138 1 4 750 186 43 0 0 chr12 21721658 21721681 -99535849 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 750 646 274 14 60 chr12 21721686 21721903 -99535627 - ID_B1 SINE B4 -15 209 3 4 750 465 62 0 0 chr12 21724090 21724155 -99533375 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 750 501 97 53 0 chr12 21724157 21724270 -99533260 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 4 750 744 12 0 0 chr12 21724430 21724515 -99533015 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 750 345 229 182 9 chr12 21724532 21724642 -99532888 - B1_Mur2 SINE Alu -20 129 1 4 750 793 213 100 11 chr12 21724668 21724858 -99532672 - B3 SINE B2 -5 211 5 4 750 313 278 121 106 chr12 21725079 21725279 -99532251 - MLT1F1 LTR MaLR -226 334 141 4 750 527 0 0 16 chr12 21725339 21725403 -99532127 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 750 770 171 39 0 chr12 21725403 21725532 -99531998 - B1_Mus1 SINE Alu -12 136 3 4 750 470 129 0 12 chr12 21725872 21725958 -99531572 + (TCCCC)n Simple_repeat Simple_repeat 2 86 0 4 750 855 270 9 65 chr12 21726762 21726806 -99530724 + MTE2b LTR MaLR 1 41 -338 4 750 652 204 169 50 chr12 21726806 21727007 -99530523 - URR1A DNA MER1_type -1 225 1 4 750 855 271 8 57 chr12 21727007 21727296 -99530234 + MTE2b LTR MaLR 42 372 -7 4 750 300 257 4 31 chr12 21727784 21727884 -99529646 + MT2A LTR ERVL 9 105 -496 4 750 890 119 0 7 chr12 21728967 21729111 -99528419 + URR1B DNA MER1_type 83 225 0 4 751 642 294 41 45 chr12 21779397 21779689 -99477841 - B4A SINE B4 0 292 2 4 751 372 94 0 0 chr12 21779867 21779920 -99477610 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 751 277 316 13 0 chr12 21780398 21780477 -99477053 + MIRb SINE MIR 34 113 -155 4 751 367 278 37 0 chr12 21780491 21780599 -99476931 - PB1D7 SINE Alu -6 114 3 4 751 182 283 94 34 chr12 21780787 21780904 -99476626 - L2b LINE L2 -216 3159 3036 4 751 773 231 31 18 chr12 21780985 21781148 -99476382 + B3A SINE B2 4 168 -30 4 751 649 226 14 40 chr12 21781715 21781906 -99475624 - B3 SINE B2 0 195 15 4 751 465 233 73 24 chr12 21781937 21782060 -99475470 - B1F1 SINE Alu 0 149 21 4 751 351 269 0 0 chr12 21782116 21782194 -99475336 - PB1D10 SINE Alu 0 117 40 4 751 599 122 0 11 chr12 21782276 21782367 -99475163 + B2_Mm2 SINE B2 4 93 -102 4 751 444 143 0 0 chr12 21783636 21783720 -99473810 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 751 696 199 49 14 chr12 21783735 21783878 -99473652 - B1_Mur3 SINE Alu 0 149 2 4 751 1991 142 10 10 chr12 21783881 21784195 -99473335 + MTC LTR MaLR 108 421 0 4 751 253 291 84 17 chr12 21784200 21784319 -99473211 - MIRb SINE MIR -128 140 14 4 751 372 274 202 37 chr12 21784704 21784867 -99472663 + MER2 DNA MER2_type 7 196 -149 4 751 705 225 0 0 chr12 21784927 21785047 -99472483 - RSINE1 SINE B4 -40 125 6 4 751 649 259 61 25 chr12 21785278 21785476 -99472054 - B4A SINE B4 -86 206 2 4 751 873 19 0 0 chr12 21785521 21785624 -99471906 + (TTTTC)n Simple_repeat Simple_repeat 2 104 0 4 751 1327 148 13 18 chr12 21786387 21786614 -99470916 - URR1A DNA MER1_type 0 226 1 4 751 737 188 26 7 chr12 21788105 21788247 -99469283 + ID_B1 SINE B4 86 233 -59 4 751 649 189 45 45 chr12 21788259 21788392 -99469138 + B1_Mur3 SINE Alu 4 136 -13 4 751 693 24 0 0 chr12 21788403 21788486 -99469044 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 751 423 141 0 0 chr12 21788486 21788578 -99468952 + (GA)n Simple_repeat Simple_repeat 1 92 0 4 751 574 218 60 0 chr12 21788784 21788917 -99468613 - ID_B1 SINE B4 -2 222 82 4 751 216 0 0 0 chr12 21788927 21788951 -99468579 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 751 975 63 0 23 chr12 21788953 21789082 -99468448 - B1_Mm SINE Alu 0 147 22 4 751 712 242 37 27 chr12 21789157 21789344 -99468186 - B3 SINE B2 0 216 28 4 751 398 241 34 8 chr12 21789524 21789641 -99467889 + PB1D9 SINE Alu 1 120 0 4 751 460 139 43 9 chr12 21790364 21790480 -99467050 + GA-rich Low_complexity Low_complexity 1 120 0 4 751 228 108 81 0 chr12 21790936 21790973 -99466557 - RLTR13A LTR ERVK 0 855 816 4 751 4511 16 0 0 chr12 21791247 21791740 -99465790 - MT2_Mm LTR ERVL 0 493 1 4 751 319 0 0 0 chr12 21791740 21791778 -99465752 - MERVL-int LTR ERVL 0 5485 5448 4 751 403 167 46 35 chr12 21791778 21791865 -99465665 - ORR1A3-int LTR MaLR -1323 640 553 4 751 48435 14 8 0 chr12 21791865 21797182 -99460348 - MERVL-int LTR ERVL -125 5360 1 4 751 4511 16 0 0 chr12 21797182 21797675 -99459855 - MT2_Mm LTR ERVL 0 493 1 4 751 240 175 0 0 chr12 21799633 21799696 -99457834 + CT-rich Low_complexity Low_complexity 1 63 0 4 751 1128 168 37 5 chr12 21799910 21800126 -99457404 + URR1B DNA MER1_type 2 224 -1 4 751 361 274 61 23 chr12 21800177 21800308 -99457222 + MER33 DNA MER1_type 189 324 0 4 751 563 274 31 19 chr12 21800774 21800934 -99456596 + RSINE1 SINE B4 1 162 -3 4 751 186 43 0 0 chr12 21801607 21801630 -99455900 + (TTCTC)n Simple_repeat Simple_repeat 1 23 0 4 751 192 158 0 0 chr12 21801630 21801668 -99455862 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 751 2275 102 0 58 chr12 21801679 21802022 -99455508 - ORR1A2 LTR MaLR -4 323 1 4 751 293 257 0 0 chr12 21802022 21802092 -99455438 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 751 951 166 0 0 chr12 21802169 21802314 -99455216 - B1_Mur4 SINE Alu -5 145 1 4 751 246 322 77 64 chr12 21802335 21802491 -99455039 - B3A SINE B2 -3 195 38 4 751 355 244 25 101 chr12 21802506 21802649 -99454881 - B4A SINE B4 -51 241 108 4 751 927 209 25 30 chr12 21803604 21803801 -99453729 - ID_B1 SINE B4 -8 216 21 4 751 212 246 0 141 chr12 21803850 21803868 -99453662 - PB1D7 SINE Alu -5 115 98 4 751 932 173 0 0 chr12 21803868 21804018 -99453512 - B1_Mur4 SINE Alu 0 150 1 4 751 235 206 0 19 chr12 21804018 21804070 -99453460 - PB1D10 SINE Alu -23 97 53 4 751 214 235 12 12 chr12 21807546 21807628 -99449902 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 751 244 303 124 31 chr12 21808233 21808409 -99449121 - MIRb SINE MIR -66 202 13 4 751 679 291 23 0 chr12 21808808 21808980 -99448550 - B3A SINE B2 -21 177 2 4 751 2179 88 47 6 chr12 21808989 21809310 -99448220 - L1_Mus3 LINE L1 -6 6632 6299 4 751 379 222 256 11 chr12 21809326 21809593 -99447937 - L1MC1 LINE L1 0 6333 6002 4 751 520 195 24 6 chr12 21810102 21810272 -99447258 + (TG)n Simple_repeat Simple_repeat 1 173 0 4 751 306 190 41 8 chr12 21810319 21810441 -99447089 + (TG)n Simple_repeat Simple_repeat 1 126 0 4 751 225 0 0 0 chr12 21810668 21810693 -99446837 + (TAA)n Simple_repeat Simple_repeat 2 26 0 4 751 309 273 71 159 chr12 21810693 21811046 -99446484 + L1M4b LINE L1 2774 3095 -4239 4 751 400 274 35 29 chr12 21811602 21811775 -99445755 + L1_Mur3 LINE L1 1048 1221 -6507 4 751 2147 236 89 8 chr12 21811761 21812670 -99444860 + L1_Mur3 LINE L1 1088 2082 -3798 4 751 837 167 14 0 chr12 21812934 21813078 -99444452 - B1_Mus1 SINE Alu -1 147 2 4 751 288 238 0 59 chr12 21813372 21813457 -99444073 - ORR1C2 LTR MaLR -14 370 291 4 751 354 294 7 25 chr12 21813747 21813975 -99443555 - MMSAT4 Satellite Satellite 0 223 1 4 751 523 294 70 51 chr12 21813921 21814088 -99443442 - MurSatRep1 Unknown Unknown 0 2137 1988 4 751 464 295 0 0 chr12 21814088 21814227 -99443303 - MMSAT4 Satellite Satellite 0 168 30 4 751 523 294 70 51 chr12 21814227 21814554 -99442976 - MurSatRep1 Unknown Unknown 0 1987 1691 4 751 480 272 14 14 chr12 21814424 21814647 -99442883 - MMSAT4 Satellite Satellite 0 223 1 4 751 462 308 57 41 chr12 21814590 21814979 -99442551 - MurSatRep1 Unknown Unknown 0 2137 1743 4 751 483 283 19 17 chr12 21814760 21815091 -99442439 - MMSAT4 Satellite Satellite 0 559 41 4 751 396 330 25 20 chr12 21815091 21815295 -99442235 - MurSatRep1 Unknown Unknown -88 2049 1845 4 751 483 283 19 17 chr12 21815295 21815319 -99442211 - MMSAT4 Satellite Satellite 0 40 1 4 751 8155 190 98 28 chr12 21815432 21816429 -99441101 - MurSatRep1 Unknown Unknown -2 2135 1120 4 751 1266 117 5 0 chr12 21816429 21816617 -99440913 + B2_Mm1a SINE B2 2 190 -3 4 751 8155 190 98 28 chr12 21816617 21817462 -99440068 - MurSatRep1 Unknown Unknown -1018 1119 177 4 751 322 314 65 0 chr12 21817462 21817586 -99439944 + B1_Mur2 SINE Alu 1 132 -17 4 751 8155 190 98 28 chr12 21817586 21817735 -99439795 - MurSatRep1 Unknown Unknown -1961 176 3 4 751 298 328 77 48 chr12 21817829 21818037 -99439493 + B3 SINE B2 3 216 0 4 751 306 246 61 38 chr12 21818143 21818274 -99439256 + Lx4B LINE L1 6921 7054 -4 4 751 1526 300 40 35 chr12 21818342 21819079 -99438451 - ORR1D-int LTR MaLR -123 1457 562 4 751 5995 238 16 6 chr12 21819094 21820495 -99437035 + Lx4B LINE L1 5641 7054 -4 4 751 960 109 0 33 chr12 21820678 21820830 -99436700 + B1_Mus2 SINE Alu 1 147 0 4 751 366 350 40 117 chr12 21820877 21821126 -99436404 - ORR1D-int LTR MaLR -1219 361 132 4 751 472 256 19 34 chr12 21822256 21822462 -99435068 + L1_Mur3 LINE L1 904 1106 -6622 4 751 531 251 76 65 chr12 21822759 21823213 -99434317 + L1_Mur3 LINE L1 1314 1836 -4044 4 751 5261 99 22 62 chr12 21823774 21824698 -99432832 + RMER17D LTR ERVK 1 887 -2 4 751 341 320 43 109 chr12 21825109 21825519 -99432011 - MT2A LTR ERVL 0 601 74 4 751 198 100 0 104 chr12 21825558 21825625 -99431905 + (TTAGGG)n Simple_repeat Simple_repeat 5 64 0 4 751 229 240 130 16 chr12 21825697 21825820 -99431710 - Lx8 LINE L1 -2 7471 7335 5 751 280 133 33 0 chr12 21825839 21825899 -99431631 + CT-rich Low_complexity Low_complexity 3 64 0 5 751 226 285 141 34 chr12 21825968 21826117 -99431413 - Lx8 LINE L1 -342 7131 6967 5 751 763 240 64 50 chr12 21826421 21826640 -99430890 + ID_B1 SINE B4 1 222 -2 5 751 829 191 173 0 chr12 21826976 21827201 -99430329 - Lx9 LINE L1 0 7644 7381 5 751 1131 77 0 0 chr12 21827253 21827396 -99430134 + B1_Mm SINE Alu 1 143 -4 5 751 219 98 78 0 chr12 21827419 21827470 -99430060 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 751 512 273 138 11 chr12 21827738 21827912 -99429618 + B3A SINE B2 3 198 0 5 751 209 286 11 56 chr12 21828323 21828412 -99429118 + MER5B DNA MER1_type 32 116 -62 5 751 348 342 92 7 chr12 21828486 21828639 -99428891 - MER5A1 DNA MER1_type 0 166 1 5 751 289 378 15 30 chr12 21828649 21828780 -99428750 + MER3 DNA MER1_type 3 131 -78 5 751 273 299 0 40 chr12 21830235 21830336 -99427194 + B4A SINE B4 1 97 -195 5 751 315 85 0 0 chr12 21830397 21830444 -99427086 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 751 189 267 149 3 chr12 21830829 21830903 -99426627 + MIRm SINE MIR 74 161 -115 5 751 31 26 0 0 chr12 21834788 21834826 -99422704 + GC_rich Low_complexity Low_complexity 1 38 0 5 751 807 156 0 0 chr12 21836090 21836336 -99421194 + (CA)n Simple_repeat Simple_repeat 1 246 0 5 751 411 196 0 0 chr12 21836379 21836512 -99421018 + (CA)n Simple_repeat Simple_repeat 2 134 0 5 751 371 235 12 0 chr12 21836569 21836650 -99420880 - ID2 SINE ID 0 83 2 5 751 1277 302 84 112 chr12 21836964 21837677 -99419853 + MER63C DNA AcHobo 233 925 -5 5 751 213 94 0 0 chr12 21837920 21837952 -99419578 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5 751 410 248 85 28 chr12 21838051 21838192 -99419338 + B1F SINE Alu 1 149 0 5 751 27 62 0 0 chr12 21840428 21840476 -99417054 + GC_rich Low_complexity Low_complexity 1 48 0 5 751 663 159 0 0 chr12 21842067 21842218 -99415312 + (CA)n Simple_repeat Simple_repeat 2 152 0 5 751 333 182 0 0 chr12 21842229 21842328 -99415202 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 751 387 188 0 0 chr12 21842370 21842487 -99415043 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 751 385 222 12 0 chr12 21842544 21842625 -99414905 - ID2 SINE ID 0 83 2 5 751 813 197 0 14 chr12 21842745 21842889 -99414641 + B1_Mur3 SINE Alu 2 143 -6 5 751 457 356 38 13 chr12 21842907 21843146 -99414384 + MER46C DNA MER2_type 92 336 -2 5 751 1474 218 100 8 chr12 21843361 21843741 -99413789 + MTD LTR MaLR 5 419 0 5 751 1110 50 14 21 chr12 21844152 21844296 -99413234 - B1_Mus2 SINE Alu 0 147 5 5 751 559 214 9 0 chr12 21844349 21844461 -99413069 + PB1D9 SINE Alu 2 114 -6 5 751 348 191 16 0 chr12 21845352 21845415 -99412115 - B3 SINE B2 -64 152 89 5 751 889 133 27 20 chr12 21845444 21845590 -99411940 - B1_Mus1 SINE Alu 0 148 2 5 751 236 176 0 0 chr12 21845590 21845624 -99411906 - B3 SINE B2 -117 99 66 5 751 274 292 0 0 chr12 21845683 21845748 -99411782 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 751 709 218 78 0 chr12 21845769 21845911 -99411619 - B3 SINE B2 -15 201 49 5 751 769 179 21 7 chr12 21846102 21846243 -99411287 - B1_Mur1 SINE Alu -6 143 1 5 751 1229 316 81 113 chr12 21846431 21847138 -99410392 + MER63C DNA AcHobo 242 925 -5 5 751 281 301 176 64 chr12 21847298 21847381 -99410149 - MamRep434 DNA TcMar -79 347 246 5 751 195 42 0 0 chr12 21847381 21847405 -99410125 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 751 281 301 176 64 chr12 21847405 21847509 -99410021 - MamRep434 DNA TcMar -181 245 140 5 751 358 277 44 18 chr12 21847512 21847626 -99409904 + PB1D10 SINE Alu 1 117 0 5 751 963 0 0 0 chr12 21848263 21848370 -99409160 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 5 751 399 240 41 8 chr12 21848908 21849030 -99408500 + Lx3B LINE L1 6848 6973 0 5 751 612 0 0 0 chr12 21849272 21849340 -99408190 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 5 751 1145 107 6 0 chr12 21849340 21849499 -99408031 - B2_Mm1a SINE B2 -33 160 1 5 751 276 194 153 0 chr12 21849994 21850066 -99407464 + MER5A1 DNA MER1_type 13 95 -71 5 751 606 296 9 87 chr12 21850298 21850516 -99407014 - ID_B1 SINE B4 -22 202 2 5 751 321 322 113 36 chr12 21850521 21850743 -99406787 - L2b LINE L2 -184 3242 3004 5 751 251 244 0 0 chr12 21851063 21851108 -99406422 - ETnERV2-int LTR ERVK -193 7213 7169 5 751 520 261 84 0 chr12 21851175 21851294 -99406236 - ETnERV2-int LTR ERVK -204 7202 7074 5 751 724 263 92 42 chr12 21851426 21851664 -99405866 + B4A SINE B4 5 254 -38 5 751 559 60 12 12 chr12 21851693 21851778 -99405752 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 751 300 116 0 0 chr12 21852318 21852361 -99405169 - MTC LTR MaLR -287 134 92 5 751 1473 208 98 88 chr12 21852582 21852628 -99404902 - MTD LTR MaLR 0 419 377 5 751 731 175 33 47 chr12 21852628 21852778 -99404752 + B1_Mus1 SINE Alu 1 148 0 5 751 1473 208 98 88 chr12 21852778 21853131 -99404399 - MTD LTR MaLR -43 376 16 5 751 374 69 17 0 chr12 21853273 21853331 -99404199 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 5 751 514 286 0 13 chr12 21853511 21853660 -99403870 + B1_Mm SINE Alu 1 147 0 5 751 234 128 26 0 chr12 21853904 21853943 -99403587 - MLT1C LTR MaLR -279 188 149 5 751 347 200 0 0 chr12 21854106 21854166 -99403364 - B3 SINE B2 -87 129 70 5 751 422 86 0 0 chr12 21854413 21854471 -99403059 - RMER6D LTR ERVK -662 58 1 5 751 211 291 74 25 chr12 21854471 21854545 -99402985 - B4A SINE B4 -212 80 3 5 751 490 318 68 0 chr12 21854844 21854976 -99402554 + RSINE1 SINE B4 21 161 -4 5 751 2309 157 19 42 chr12 21855963 21856388 -99401142 + MTC LTR MaLR 1 415 -6 5 751 209 292 109 50 chr12 21856792 21856911 -99400619 + L2b LINE L2 2791 2916 -503 5 751 1519 77 0 5 chr12 21857017 21857212 -99400318 - B2_Mm2 SINE B2 -1 194 1 5 751 376 213 13 39 chr12 21857300 21857378 -99400152 - RSINE1 SINE B4 -40 125 50 5 751 1003 146 0 0 chr12 21857468 21857612 -99399918 + B1_Mur1 SINE Alu 6 149 0 5 751 411 297 103 95 chr12 21857921 21858163 -99399367 + ORR1E LTR MaLR 116 359 0 5 751 204 327 114 35 chr12 21858173 21858295 -99399235 + L2b LINE L2 3228 3387 0 5 751 738 32 0 0 chr12 21858303 21858396 -99399134 + (TG)n Simple_repeat Simple_repeat 1 93 0 5 751 289 276 13 13 chr12 21858606 21858683 -99398847 - ID2 SINE ID -5 78 2 5 751 207 146 0 0 chr12 21859173 21859214 -99398316 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 5 751 1180 125 16 0 chr12 21859373 21859565 -99397965 - B2_Mm2 SINE B2 0 195 1 5 751 282 56 0 0 chr12 21859577 21859613 -99397917 + (T)n Simple_repeat Simple_repeat 1 36 0 5 751 526 272 18 0 chr12 21859613 21859727 -99397803 - RSINE1 SINE B4 -47 118 3 5 751 1258 54 0 0 chr12 21859833 21859980 -99397550 + B1_Mus2 SINE Alu 1 147 0 5 751 276 127 0 0 chr12 21859981 21860036 -99397494 + (A)n Simple_repeat Simple_repeat 1 55 0 5 751 618 176 10 10 chr12 21860146 21860249 -99397281 - B1_Mur2 SINE Alu -40 109 7 5 751 477 97 0 0 chr12 21860274 21860346 -99397184 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 751 363 293 218 0 chr12 21860359 21860492 -99397038 - B3A SINE B2 -29 169 8 5 751 545 242 95 38 chr12 21861158 21861368 -99396162 + ID_B1 SINE B4 3 224 0 5 751 1622 255 48 5 chr12 21862404 21862802 -99394728 - MTD LTR MaLR -3 416 2 5 751 239 336 30 46 chr12 21862802 21862933 -99394597 + RMER15 LTR ERVL 440 568 -7 5 751 1365 284 8 72 chr12 21863090 21863444 -99394086 - ORR1D2 LTR MaLR -4 366 34 5 751 1128 158 76 9 chr12 21863444 21863655 -99393875 + URR1B DNA MER1_type 1 225 0 5 751 1365 284 8 72 chr12 21863655 21863691 -99393839 - ORR1D2 LTR MaLR -337 33 1 5 751 1123 185 19 0 chr12 21866974 21867185 -99390345 + B3 SINE B2 2 216 0 5 751 729 154 210 90 chr12 21867223 21867423 -99390107 - URR1B DNA MER1_type 0 225 2 5 751 186 250 23 0 chr12 21867476 21867520 -99390010 + MIRc SINE MIR 85 129 -139 5 751 261 254 83 83 chr12 21868137 21868257 -99389273 + MT2B LTR ERVL 168 287 -314 5 751 352 258 0 22 chr12 21868193 21868226 -99389304 + B4A SINE B4 54 84 -208 5 751 436 50 0 32 chr12 21868226 21868288 -99389242 + B1_Mus1 SINE Alu 1 60 -88 5 751 278 212 55 78 chr12 21868314 21868442 -99389088 + RLTR25B LTR ERVK 397 521 -507 5 751 775 53 0 0 chr12 21868358 21868453 -99389077 + B1_Mm SINE Alu 42 136 -11 5 751 572 27 14 0 chr12 21868453 21868527 -99389003 + (CAAAA)n Simple_repeat Simple_repeat 3 77 0 5 751 306 50 0 0 chr12 21868947 21868987 -99388543 + (CCA)n Simple_repeat Simple_repeat 1 40 0 5 751 2078 143 67 32 chr12 21869065 21869440 -99388090 + MTC LTR MaLR 1 388 -33 5 751 194 315 52 35 chr12 21869988 21870103 -99387427 + L2c LINE L2 3218 3334 -53 5 751 1144 87 0 122 chr12 21870249 21870431 -99387099 + B2_Mm1t SINE B2 1 159 -34 5 751 285 51 0 0 chr12 21870431 21870470 -99387060 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 5 751 1144 87 0 122 chr12 21870470 21870484 -99387046 + B2_Mm1t SINE B2 160 172 -21 5 751 1328 201 162 6 chr12 21870695 21871016 -99386514 + ORR1D1 LTR MaLR 3 373 -1 5 751 500 281 13 40 chr12 21871043 21871195 -99386335 + B1F SINE Alu 2 149 0 5 751 355 275 11 11 chr12 21871394 21871486 -99386044 + PB1D10 SINE Alu 13 104 -13 5 751 318 325 0 0 chr12 21871521 21871598 -99385932 + ID4_ SINE ID 7 83 0 5 751 697 154 6 173 chr12 21871951 21872076 -99385454 - URR1A DNA MER1_type -15 211 113 5 751 1160 75 7 0 chr12 21872076 21872222 -99385308 - B1_Mm SINE Alu 0 147 1 5 751 697 187 39 132 chr12 21872222 21872300 -99385230 - URR1A DNA MER1_type -114 112 3 5 751 225 273 0 0 chr12 21872359 21872487 -99385043 + (TCCA)n Simple_repeat Simple_repeat 1 128 0 5 751 230 143 48 0 chr12 21872552 21872594 -99384936 + ORR1D1 LTR MaLR 331 374 0 5 751 912 228 10 19 chr12 21872774 21872980 -99384550 + B3 SINE B2 2 205 -11 6 751 1807 181 85 3 chr12 21873523 21873888 -99383642 - MTD LTR MaLR 0 419 25 6 751 591 233 70 27 chr12 21873901 21874086 -99383444 - MTD-int LTR MaLR -6 1252 1060 6 751 422 340 38 6 chr12 21874087 21874244 -99383286 + RSINE1 SINE B4 4 165 0 6 751 849 149 7 0 chr12 21874371 21874512 -99383018 - B1_Mus1 SINE Alu -1 147 6 6 751 870 209 0 13 chr12 21874564 21874714 -99382816 + B1_Mur1 SINE Alu 2 149 0 6 751 317 227 45 0 chr12 21874735 21874801 -99382729 + ID4_ SINE ID 9 77 -6 6 751 283 286 60 0 chr12 21874801 21874819 -99382711 + ID_B1 SINE B4 9 97 -127 6 751 441 65 0 18 chr12 21874831 21874941 -99382589 + (TAGA)n Simple_repeat Simple_repeat 1 107 0 6 751 747 92 0 0 chr12 21874945 21875054 -99382476 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 6 751 1931 115 41 9 chr12 21875323 21875638 -99381892 - MTB LTR MaLR -75 325 1 6 751 183 100 0 0 chr12 21875832 21875862 -99381668 + (TTG)n Simple_repeat Simple_repeat 2 31 0 6 751 266 286 38 67 chr12 21875862 21875913 -99381617 - PB1D10 SINE Alu -11 106 52 6 751 957 137 7 0 chr12 21875913 21876059 -99381471 + B1_Mus1 SINE Alu 1 147 -1 6 751 266 286 38 67 chr12 21876059 21876112 -99381418 - PB1D10 SINE Alu -66 51 5 6 751 284 254 104 0 chr12 21876072 21876139 -99381391 - ID_B1 SINE B4 -99 125 52 6 751 929 291 10 0 chr12 21876292 21876498 -99381032 + MTEa LTR MaLR 18 225 -154 6 751 190 122 195 0 chr12 21876710 21876751 -99380779 + L3 LINE CR1 915 963 -3526 6 751 213 265 125 0 chr12 21876943 21877032 -99380498 + MIRm SINE MIR 50 155 -121 6 751 215 281 103 26 chr12 21877121 21877238 -99380292 - MER5A DNA MER1_type -4 185 60 6 751 363 248 56 42 chr12 21877426 21877569 -99379961 - MLT1N2 LTR MaLR -5 557 413 6 751 4183 59 16 2 chr12 21877602 21878114 -99379416 + MURVY-LTR LTR ERV1 1 519 0 6 751 600 279 124 53 chr12 21878619 21878819 -99378711 + RMER10A LTR ERVL 62 271 -171 6 751 291 85 0 0 chr12 21878819 21878866 -99378664 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 6 751 600 279 124 53 chr12 21878866 21879021 -99378509 + RMER10A LTR ERVL 272 441 -1 6 751 576 0 0 0 chr12 21879138 21879202 -99378328 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 751 306 0 0 0 chr12 21879202 21879235 -99378295 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 751 536 264 107 13 chr12 21879236 21879386 -99378144 - RSINE1 SINE B4 0 165 2 6 751 886 133 0 14 chr12 21880047 21880192 -99377338 + URR1B DNA MER1_type 83 225 0 6 751 809 313 45 41 chr12 21880475 21880765 -99376765 - B4A SINE B4 0 292 2 6 751 2281 69 6 50 chr12 21880845 21881182 -99376348 - RLTRETN_Mm LTR ERVK 0 322 1 6 751 849 147 0 7 chr12 21881182 21881319 -99376211 - MMETn-int LTR ERVK 0 4844 4709 6 751 250 296 137 88 chr12 21881319 21881523 -99376007 - RLTR13A2 LTR ERVK -468 490 277 6 751 5404 81 20 21 chr12 21881524 21882268 -99375262 - MMETn-int LTR ERVK -336 4508 3766 6 751 1710 88 4 17 chr12 21882274 21882505 -99375025 - ETnERV-int LTR ERVK -1239 2075 1848 6 751 274 98 0 24 chr12 21882503 21882545 -99374985 + ETnERV2-int LTR ERVK 4653 4693 -2713 6 751 25332 55 7 16 chr12 21882568 21885967 -99371563 - MMETn-int LTR ERVK -2781 4625 2 6 751 2209 72 9 51 chr12 21885968 21886304 -99371226 - RLTRETN_Mm LTR ERVK 0 322 1 6 751 293 328 8 41 chr12 21887442 21887563 -99369967 + MIRb SINE MIR 2 118 -150 6 751 324 298 77 0 chr12 21887571 21887675 -99369855 - PB1D7 SINE Alu -6 114 3 6 751 1151 98 0 0 chr12 21887735 21887898 -99369632 - L1_Mus2 LINE L1 0 6566 6404 6 751 23 0 0 0 chr12 21888063 21888086 -99369444 + AT_rich Low_complexity Low_complexity 1 23 0 6 751 1124 60 0 56 chr12 21888103 21888209 -99369321 - L1_Mus1 LINE L1 0 6567 6485 6 751 3202 42 8 5 chr12 21888209 21888596 -99368934 - RLTR10 LTR ERVK -2 388 1 6 751 1119 60 0 56 chr12 21888596 21888670 -99368860 - L1_Mus1 LINE L1 -83 6484 6411 6 751 213 257 71 0 chr12 21888686 21888756 -99368774 - L2b LINE L2 -265 3110 3036 6 751 753 224 30 18 chr12 21888836 21889000 -99368530 + B3A SINE B2 3 168 -30 6 752 207 181 56 0 chr12 21889497 21889527 -99368003 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 6 752 527 103 10 0 chr12 21889527 21889624 -99367906 + (TATG)n Simple_repeat Simple_repeat 3 100 0 6 752 207 181 56 0 chr12 21889624 21889665 -99367865 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 6 752 1985 155 65 3 chr12 21890019 21890387 -99367143 + MTC LTR MaLR 1 391 -30 6 752 694 247 147 5 chr12 21890474 21890665 -99366865 - ID_B1 SINE B4 0 224 7 6 752 354 23 0 0 chr12 21891617 21891660 -99365870 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 752 1416 90 53 18 chr12 21892042 21892268 -99365262 + MTC LTR MaLR 5 238 -183 6 752 11977 68 17 47 chr12 21892293 21894157 -99363373 + RLTR22_Mus LTR ERVK 1 1808 0 6 752 341 256 0 37 chr12 21894373 21894454 -99363076 - ID4_ SINE ID -3 80 3 6 752 251 278 118 67 chr12 21894464 21894599 -99362931 - ID_B1 SINE B4 -4 220 79 6 752 533 15 15 0 chr12 21895115 21895181 -99362349 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 6 752 216 143 43 0 chr12 21895243 21895313 -99362217 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 6 752 501 17 0 0 chr12 21895392 21895450 -99362080 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 6 752 537 277 8 8 chr12 21895479 21895610 -99361920 - ID_B1 SINE B4 -25 199 69 6 752 1152 242 19 19 chr12 21895869 21896138 -99361392 + B4 SINE B4 5 273 -19 6 752 381 225 45 0 chr12 21896226 21896315 -99361215 + PB1D10 SINE Alu 17 109 -8 6 752 244 146 20 20 chr12 21896340 21896389 -99361141 + B1_Mur4 SINE Alu 7 55 -95 6 752 1165 61 139 12 chr12 21896571 21896736 -99360794 - B2_Mm2 SINE B2 -9 186 1 6 752 660 172 15 30 chr12 21896746 21896899 -99360631 - B1_Mur4 SINE Alu 0 150 4 6 752 282 200 0 0 chr12 21897466 21897517 -99360013 - ORR1B1 LTR MaLR 0 394 344 6 752 1967 63 0 50 chr12 21897517 21897816 -99359714 - RLTR10B LTR ERVK 0 292 9 6 752 265 56 0 0 chr12 21897816 21897852 -99359678 - RLTR10B LTR ERVK -256 36 1 6 752 4656 93 10 1 chr12 21897852 21898805 -99358725 - MMERVK10C-int LTR ERVK 0 7680 6690 6 752 261 0 0 0 chr12 21898805 21898834 -99358696 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 752 4656 78 8 0 chr12 21898834 21898872 -99358658 - MMERVK10C-int LTR ERVK -892 6689 6652 6 752 40213 63 2 4 chr12 21898863 21903811 -99353719 - MMERVK10C-int LTR ERVK -1771 5810 870 6 752 1695 72 10 12 chr12 21903809 21904129 -99353401 - MMERVK10C-int LTR ERVK -7182 399 1 6 752 2126 50 44 51 chr12 21904129 21904423 -99353107 - RLTR10B LTR ERVK 0 292 1 6 752 1471 147 25 95 chr12 21904423 21904739 -99352791 - ORR1B1 LTR MaLR -60 334 41 6 752 594 222 14 40 chr12 21904883 21905074 -99352456 - B3 SINE B2 0 195 15 6 752 417 260 55 8 chr12 21905105 21905233 -99352297 - B1F1 SINE Alu 0 149 16 6 752 291 226 0 0 chr12 21905226 21905279 -99352251 - RSINE1 SINE B4 -31 134 82 6 752 24 0 0 0 chr12 21905315 21905339 -99352191 + AT_rich Low_complexity Low_complexity 1 24 0 6 752 683 221 279 7 chr12 21905354 21905641 -99351889 + MTC LTR MaLR 57 421 0 6 752 650 13 13 0 chr12 21907023 21907102 -99350428 + (TC)n Simple_repeat Simple_repeat 1 80 0 6 752 336 83 0 0 chr12 21907102 21907149 -99350381 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 752 281 356 77 0 chr12 21907152 21907256 -99350274 - RSINE1 SINE B4 -20 145 34 6 752 662 245 134 79 chr12 21907363 21907655 -99349875 - MTE2a LTR MaLR -14 365 58 6 752 1439 153 0 5 chr12 21907673 21907896 -99349634 - URR1B DNA MER1_type -3 222 1 6 752 891 153 21 0 chr12 21907927 21908071 -99349459 + B1_Mus1 SINE Alu 1 147 -1 6 752 776 214 94 26 chr12 21908098 21908290 -99349240 + B3 SINE B2 4 208 -8 6 752 1434 83 5 15 chr12 21908869 21909065 -99348465 - B2_Mm2 SINE B2 0 195 2 6 752 457 209 57 0 chr12 21909669 21909774 -99347756 + MTC LTR MaLR 8 118 -303 6 752 447 68 0 0 chr12 21909774 21909833 -99347697 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 6 752 763 170 49 21 chr12 21909837 21909981 -99347549 - B1_Mur3 SINE Alu 0 149 2 6 752 1962 113 10 10 chr12 21909984 21910298 -99347232 + MTC LTR MaLR 108 421 0 6 752 223 114 0 43 chr12 21910530 21910576 -99346954 + C-rich Low_complexity Low_complexity 2 45 0 6 752 763 155 16 0 chr12 21911825 21911954 -99345576 + ID_B1 SINE B4 88 218 -6 6 752 443 282 16 24 chr12 21911976 21912103 -99345427 + B1_Mus1 SINE Alu 1 126 -22 6 752 315 0 0 0 chr12 21912103 21912138 -99345392 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 752 708 45 0 0 chr12 21912194 21912282 -99345248 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 752 473 236 65 0 chr12 21912479 21912602 -99344928 - ID_B1 SINE B4 -2 222 92 6 752 663 213 124 31 chr12 21912683 21912877 -99344653 - B3 SINE B2 0 216 5 6 752 429 198 0 6 chr12 21913060 21913171 -99344359 + B1_Mur3 SINE Alu 13 120 0 6 752 451 188 8 8 chr12 21913883 21914001 -99343529 + GA-rich Low_complexity Low_complexity 1 118 0 6 752 507 163 20 0 chr12 21914934 21915081 -99342449 + (CA)n Simple_repeat Simple_repeat 1 150 0 6 752 237 214 0 0 chr12 21917387 21917443 -99340087 + CT-rich Low_complexity Low_complexity 2 57 0 6 752 739 186 191 5 chr12 21917649 21917838 -99339692 + URR1B DNA MER1_type 1 224 -1 6 752 299 268 57 8 chr12 21917894 21918018 -99339512 + MER33 DNA MER1_type 194 323 -1 6 752 563 262 33 13 chr12 21918512 21918663 -99338867 + RSINE1 SINE B4 11 164 -1 6 752 423 185 0 0 chr12 21919360 21919452 -99338078 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 752 2257 99 0 69 chr12 21919484 21919831 -99337699 - ORR1A2 LTR MaLR -4 323 1 6 752 210 192 0 0 chr12 21919831 21919883 -99337647 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 752 962 140 0 0 chr12 21919969 21920105 -99337425 - B1_Mur4 SINE Alu -14 136 1 6 752 455 301 32 0 chr12 21920153 21920309 -99337221 - B3A SINE B2 -36 162 2 6 752 578 269 19 72 chr12 21920326 21920534 -99336996 - B4A SINE B4 -72 220 24 6 752 780 226 28 37 chr12 21921429 21921645 -99335885 - ID_B1 SINE B4 -8 216 3 6 752 807 193 0 20 chr12 21921669 21921822 -99335708 - B1_Mur4 SINE Alu 0 150 1 6 752 297 176 162 0 chr12 21921824 21921892 -99335638 - PB1D10 SINE Alu -14 103 25 6 752 183 42 0 0 chr12 21923196 21923220 -99334310 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 752 2140 41 0 133 chr12 21924427 21924764 -99332766 + RLTR10B LTR ERVK 1 292 0 7 752 2119 49 15 4 chr12 21924764 21925028 -99332502 + MMERVK10C-int LTR ERVK 1 267 -7314 7 752 267 118 57 29 chr12 21925103 21925173 -99332357 + GA-rich Low_complexity Low_complexity 3 74 0 7 752 2371 35 128 0 chr12 21925173 21925503 -99332027 + RLTR10-int LTR ERVK 553 911 -1076 7 752 2773 111 7 5 chr12 21925733 21926147 -99331383 + MMERVK10C-int LTR ERVK 5002 5810 -1771 7 752 7158 59 3 65 chr12 21926138 21927130 -99330400 + MMERVK10C-int LTR ERVK 6651 7581 0 7 752 232 31 0 0 chr12 21927130 21927162 -99330368 + RLTR10B LTR ERVK 1 32 -260 7 752 1807 78 0 93 chr12 21927166 21927479 -99330051 + RLTR10B LTR ERVK 9 292 0 7 752 296 256 12 12 chr12 21928422 21928505 -99329025 + (TG)n Simple_repeat Simple_repeat 2 84 0 7 752 207 299 20 40 chr12 21929117 21929218 -99328312 - MIR SINE MIR -78 184 86 7 752 718 256 23 0 chr12 21929682 21929854 -99327676 - B3A SINE B2 -22 176 1 7 752 2146 93 65 12 chr12 21929862 21930198 -99327332 - L1_Mus3 LINE L1 -6 6632 6279 7 752 340 183 42 0 chr12 21930208 21930279 -99327251 - L1MC1 LINE L1 0 6333 6260 7 752 240 249 44 26 chr12 21930824 21930938 -99326592 + L1P5 LINE L1 5786 5899 -401 7 752 428 195 35 6 chr12 21930944 21931114 -99326416 + (TG)n Simple_repeat Simple_repeat 1 175 0 7 752 455 200 23 5 chr12 21931153 21931381 -99326149 + (TG)n Simple_repeat Simple_repeat 1 232 0 7 752 21 0 0 0 chr12 21931607 21931628 -99325902 + AT_rich Low_complexity Low_complexity 1 21 0 7 752 208 200 11 11 chr12 21931669 21931760 -99325770 + (TATAA)n Simple_repeat Simple_repeat 2 92 0 7 752 26 0 0 0 chr12 21931760 21931786 -99325744 + AT_rich Low_complexity Low_complexity 1 26 0 7 752 28 0 0 0 chr12 21931879 21931907 -99325623 + AT_rich Low_complexity Low_complexity 1 28 0 7 752 1123 70 0 0 chr12 21931907 21932049 -99325481 - B1_Mm SINE Alu -5 142 1 7 752 502 302 53 19 chr12 21932050 21932256 -99325274 - RLTR11A2 LTR ERVK -181 346 134 7 752 249 33 0 0 chr12 21932440 21932470 -99325060 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 7 752 481 176 6 22 chr12 21932472 21932652 -99324878 + (TA)n Simple_repeat Simple_repeat 1 177 0 7 752 362 199 29 0 chr12 21932615 21932786 -99324744 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 7 752 610 213 60 7 chr12 21932844 21932995 -99324535 + Lx2B LINE L1 6625 6783 -217 7 752 198 0 0 0 chr12 21933006 21933028 -99324502 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 752 477 246 41 29 chr12 21933583 21933755 -99323775 + L1_Mur2 LINE L1 1048 1221 -6507 7 752 1133 239 66 3 chr12 21933740 21934262 -99323268 + L1_Mur2 LINE L1 1087 1650 -4230 7 752 2158 75 3 0 chr12 21934261 21934554 -99322976 - L1_Mm LINE L1 -2129 3754 3461 7 752 1148 37 0 0 chr12 21934549 21934683 -99322847 - L1_Mm LINE L1 -2055 3828 3695 7 752 300 32 3 0 chr12 21934680 21934722 -99322808 + L1M4 LINE L1 3683 3744 -2402 7 752 809 154 21 7 chr12 21934735 21934879 -99322651 - B1_Mus2 SINE Alu 0 147 2 7 752 259 261 0 0 chr12 21935171 21935240 -99322290 - ORR1C2 LTR MaLR -14 370 302 7 752 383 280 8 8 chr12 21935503 21935629 -99321901 - MMSAT4 Satellite Satellite 0 168 43 7 752 294 275 22 138 chr12 21935629 21935647 -99321883 - MurSatRep1 Unknown Unknown -88 2044 1922 7 752 2954 99 0 2 chr12 21935647 21936053 -99321477 - L1_Mus1 LINE L1 0 6567 6163 7 752 294 275 22 138 chr12 21936053 21936127 -99321403 - MurSatRep1 Unknown Unknown -216 1921 1852 7 752 525 308 68 42 chr12 21936098 21936194 -99321336 - MurSatRep1 Unknown Unknown 0 2137 2075 7 752 386 270 8 8 chr12 21936194 21936321 -99321209 - MMSAT4 Satellite Satellite -12 156 30 7 752 525 308 68 42 chr12 21936321 21936900 -99320630 - MurSatRep1 Unknown Unknown 0 2074 1691 7 752 456 250 22 22 chr12 21936854 21936993 -99320537 - MMSAT4 Satellite Satellite 0 168 30 7 752 560 303 72 44 chr12 21936933 21937572 -99319958 - MurSatRep1 Unknown Unknown 0 2137 1691 7 752 488 240 33 36 chr12 21937526 21937749 -99319781 - MMSAT4 Satellite Satellite 0 222 1 7 752 282 335 32 32 chr12 21937689 21937905 -99319625 - MurSatRep1 Unknown Unknown -88 2049 1834 7 752 9162 198 36 31 chr12 21937946 21938946 -99318584 - MurSatRep1 Unknown Unknown -2 2135 1127 7 752 1184 126 6 6 chr12 21938946 21939129 -99318401 + B2_Mm1a SINE B2 2 184 -9 7 752 9162 198 36 31 chr12 21939129 21940252 -99317278 - MurSatRep1 Unknown Unknown -1011 1126 2 7 752 234 345 90 45 chr12 21940362 21940562 -99316968 + B3 SINE B2 8 216 0 7 752 247 231 35 44 chr12 21940678 21940791 -99316739 + Lx4B LINE L1 6936 7047 -11 7 752 1233 308 76 49 chr12 21940898 21941553 -99315977 - MTE-int LTR MaLR -159 1421 749 7 752 1807 220 10 7 chr12 21941627 21942043 -99315487 + Lx4B LINE L1 5637 6053 -1005 7 752 441 264 29 34 chr12 21943668 21943872 -99313658 + L1_Mur3 LINE L1 904 1106 -6622 7 752 285 183 49 0 chr12 21944169 21944251 -99313279 + L1_Mur3 LINE L1 1314 1399 -4478 7 752 1691 228 20 84 chr12 21944252 21944703 -99312827 - RLTR1D LTR ERV1 0 605 184 7 752 897 242 10 20 chr12 21944703 21944905 -99312625 - RLTR1D LTR ERV1 -358 247 48 7 752 515 234 28 128 chr12 21945082 21945293 -99312237 + L1_Mur3 LINE L1 1647 1836 -4044 7 752 5348 115 31 39 chr12 21945854 21946748 -99310782 + RMER17D LTR ERVK 1 887 -2 7 752 242 313 79 75 chr12 21947153 21947367 -99310163 - MT2B LTR ERVL 0 601 387 7 752 644 160 204 0 chr12 21947560 21947741 -99309789 - Lx9 LINE L1 -2 7642 7425 7 752 1016 97 21 7 chr12 21947812 21947957 -99309573 + B1_Mus2 SINE Alu 1 147 0 7 752 200 103 0 49 chr12 21947960 21948001 -99309529 + A-rich Low_complexity Low_complexity 2 40 0 7 752 547 244 138 11 chr12 21948285 21948459 -99309071 + B3A SINE B2 3 198 0 7 752 203 274 11 56 chr12 21948870 21948959 -99308571 + MER5B DNA MER1_type 32 116 -62 7 752 319 326 31 0 chr12 21949033 21949131 -99308399 - MER5A1 DNA MER1_type 0 166 66 7 752 276 381 17 0 chr12 21949199 21949317 -99308213 + MER3 DNA MER1_type 12 131 -78 7 752 253 299 0 40 chr12 21951523 21951624 -99305906 + B4A SINE B4 1 97 -195 7 752 318 98 0 0 chr12 21951685 21951736 -99305794 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 752 208 316 76 16 chr12 21952067 21952195 -99305335 + MIRc SINE MIR 15 161 -115 7 752 1495 74 0 11 chr12 21952289 21952480 -99305050 + B2_Mm1a SINE B2 1 189 -4 7 752 22 0 0 0 chr12 21955242 21955264 -99302266 + GC_rich Low_complexity Low_complexity 1 22 0 7 752 750 167 0 0 chr12 21956856 21957036 -99300494 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 752 180 97 0 0 chr12 21957057 21957088 -99300442 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 752 371 235 12 0 chr12 21957151 21957232 -99300298 - ID2 SINE ID 0 83 2 7 752 814 203 0 7 chr12 21957351 21957495 -99300035 + B1_Mur3 SINE Alu 2 144 -5 7 752 372 373 38 17 chr12 21957516 21957753 -99299777 + MER46C DNA MER2_type 96 337 -1 7 752 1468 218 100 8 chr12 21957979 21958359 -99299171 + MTD LTR MaLR 5 419 0 7 752 343 41 40 40 chr12 21958753 21958829 -99298701 + (TTTTG)n Simple_repeat Simple_repeat 1 76 0 7 752 1091 69 0 20 chr12 21958829 21958976 -99298554 - B1_Mus2 SINE Alu 0 147 4 7 752 452 277 9 0 chr12 21959027 21959139 -99298391 + PB1D9 SINE Alu 2 114 -6 7 752 496 193 164 112 chr12 21960027 21960093 -99297437 - B3 SINE B2 -64 152 100 7 752 953 105 27 20 chr12 21960093 21960239 -99297291 - B1_Mus1 SINE Alu 0 148 2 7 752 496 193 164 112 chr12 21960239 21960306 -99297224 - B3 SINE B2 -117 99 12 7 752 207 220 0 0 chr12 21960326 21960376 -99297154 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 752 681 254 80 12 chr12 21960384 21960578 -99296952 - B3 SINE B2 -1 215 13 7 752 740 186 21 7 chr12 21960721 21960862 -99296668 - B1_Mur1 SINE Alu -6 143 1 7 752 1215 314 87 114 chr12 21961123 21961835 -99295695 + MER63C DNA AcHobo 233 925 -5 7 752 200 118 0 29 chr12 21962078 21962113 -99295417 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 752 330 267 8 114 chr12 21962210 21962341 -99295189 + PB1D10 SINE Alu 1 117 0 7 752 207 0 0 0 chr12 21962343 21962366 -99295164 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 752 974 65 0 7 chr12 21962989 21963129 -99294401 + (TTCC)n Simple_repeat Simple_repeat 2 140 0 7 752 1027 91 14 0 chr12 21963139 21963282 -99294248 - B1_Mm SINE Alu 0 147 3 7 752 460 213 33 0 chr12 21963810 21963932 -99293598 + Lx3B LINE L1 6848 6973 0 7 752 432 0 0 0 chr12 21964174 21964222 -99293308 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 7 752 1099 119 6 0 chr12 21964222 21964381 -99293149 - B2_Mm1a SINE B2 -33 160 1 7 752 285 194 153 0 chr12 21964876 21964948 -99292582 + MER5A1 DNA MER1_type 13 95 -71 7 752 559 301 9 87 chr12 21965180 21965398 -99292132 - ID_B1 SINE B4 -22 202 2 7 752 257 310 59 17 chr12 21965478 21965596 -99291934 - L2b LINE L2 -231 3144 3022 7 752 503 285 81 0 chr12 21966043 21966166 -99291364 - ETnERV2-int LTR ERVK -204 7202 7070 7 752 666 272 92 42 chr12 21966293 21966531 -99290999 + B4A SINE B4 5 254 -38 7 752 553 49 12 12 chr12 21966560 21966642 -99290888 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 752 278 116 0 0 chr12 21967182 21967225 -99290305 - MTC LTR MaLR -287 134 92 7 752 200 297 0 0 chr12 21967259 21967323 -99290207 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 752 1548 175 92 112 chr12 21967446 21967492 -99290038 - MTD LTR MaLR 0 419 377 7 752 705 182 35 35 chr12 21967492 21967634 -99289896 + B1_Mus1 SINE Alu 1 142 -6 7 752 1548 175 92 112 chr12 21967634 21967999 -99289531 - MTD LTR MaLR -43 376 16 7 752 575 39 13 0 chr12 21968141 21968219 -99289311 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 7 752 508 274 7 14 chr12 21968399 21968547 -99288983 + B1_Mm SINE Alu 1 147 0 7 752 234 128 26 0 chr12 21968786 21968825 -99288705 - MLT1C LTR MaLR -279 188 149 7 752 350 221 52 0 chr12 21968943 21969054 -99288476 - B3 SINE B2 0 216 70 7 752 384 121 0 0 chr12 21969306 21969364 -99288166 - RMER6D LTR ERVK -662 58 1 7 752 502 302 71 0 chr12 21969737 21969863 -99287667 + RSINE1 SINE B4 21 155 -10 7 752 1040 256 85 125 chr12 21970674 21971274 -99286256 - RLTR1D LTR ERV1 -13 611 52 7 752 2498 130 19 45 chr12 21971508 21971934 -99285596 + MTC LTR MaLR 1 415 -6 8 752 219 292 109 50 chr12 21972338 21972457 -99285073 + L2 LINE L2 2791 2916 -503 8 752 1363 106 16 0 chr12 21972563 21972752 -99284778 - B2_Mm2 SINE B2 -3 192 1 8 752 355 274 82 31 chr12 21972823 21972921 -99284609 - RSINE1 SINE B4 -13 152 50 8 752 958 174 0 0 chr12 21973008 21973152 -99284378 + B1_Mur1 SINE Alu 3 146 -3 8 752 356 297 103 95 chr12 21973480 21973722 -99283808 + ORR1E LTR MaLR 116 359 0 8 752 351 0 0 0 chr12 21973886 21973925 -99283605 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 752 341 225 14 14 chr12 21974140 21974212 -99283318 - ID2 SINE ID -10 73 2 8 752 207 146 0 0 chr12 21974704 21974745 -99282785 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 8 752 1206 120 16 0 chr12 21974905 21975097 -99282433 - B2_Mm2 SINE B2 0 195 1 8 752 225 94 0 0 chr12 21975109 21975141 -99282389 + (T)n Simple_repeat Simple_repeat 1 32 0 8 752 538 263 18 0 chr12 21975141 21975255 -99282275 - RSINE1 SINE B4 -47 118 3 8 752 1250 55 0 0 chr12 21975361 21975507 -99282023 + B1_Mus2 SINE Alu 1 146 -1 8 752 216 119 33 17 chr12 21975508 21975568 -99281962 + A-rich Low_complexity Low_complexity 3 63 0 8 752 548 198 20 10 chr12 21975669 21975771 -99281759 - B1_Mur2 SINE Alu -40 109 7 8 752 294 194 0 0 chr12 21975799 21975861 -99281669 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 752 428 219 134 156 chr12 21975861 21976040 -99281490 - B3A SINE B2 -16 182 8 8 752 524 314 29 29 chr12 21976716 21976890 -99280640 + ID_B1 SINE B4 51 224 0 8 752 1761 244 46 2 chr12 21977935 21978330 -99279200 - MTD LTR MaLR -3 416 5 8 752 256 353 35 0 chr12 21978333 21978449 -99279081 + RMER15 LTR ERVL 440 559 -16 8 752 1288 294 22 41 chr12 21978626 21978958 -99278572 - ORR1D2 LTR MaLR -8 362 34 8 752 1185 148 81 9 chr12 21978958 21979169 -99278361 + URR1A DNA MER1_type 1 226 0 8 752 1288 294 22 41 chr12 21979169 21979205 -99278325 - ORR1D2 LTR MaLR -337 33 1 8 752 6962 75 12 25 chr12 21980101 21981185 -99276345 + MuRRS-int LTR ERV1 143 1510 -3180 8 752 18848 68 1 28 chr12 21981180 21983630 -99273900 + MuRRS-int LTR ERV1 2308 4690 0 8 752 4730 57 5 3 chr12 21983630 21984216 -99273314 + LTRIS_Mus LTR ERV1 1 587 0 8 752 1345 202 161 6 chr12 21984535 21984858 -99272672 + ORR1D1 LTR MaLR 1 373 -1 8 752 543 267 13 40 chr12 21984885 21985037 -99272493 + B1F SINE Alu 2 149 0 8 752 366 286 11 21 chr12 21985236 21985329 -99272201 + PB1D10 SINE Alu 13 104 -13 8 752 721 133 209 158 chr12 21985786 21985921 -99271609 - URR1A DNA MER1_type 0 226 113 8 752 1027 118 0 0 chr12 21985921 21986065 -99271465 - B1_Mm SINE Alu -3 144 1 8 752 721 133 209 158 chr12 21986065 21986144 -99271386 - URR1A DNA MER1_type -114 112 1 8 752 208 281 0 0 chr12 21986190 21986247 -99271283 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 8 752 786 254 15 24 chr12 21986515 21986721 -99270809 + B3 SINE B2 2 205 -11 8 752 1659 201 88 6 chr12 21987251 21987616 -99269914 - MTD LTR MaLR 0 419 25 8 752 4067 240 57 56 chr12 21987629 21988789 -99268741 - MTD-int LTR MaLR -6 1252 92 8 752 289 255 37 84 chr12 21988855 21988918 -99268612 - PB1D10 SINE Alu -1 116 52 8 752 1005 116 7 0 chr12 21988918 21989064 -99268466 + B1_Mus1 SINE Alu 1 147 -1 8 752 289 255 37 84 chr12 21989064 21989107 -99268423 - PB1D10 SINE Alu -66 51 15 8 752 275 242 121 0 chr12 21989077 21989143 -99268387 - ID_B1 SINE B4 -99 125 52 8 752 967 281 13 0 chr12 21989279 21989503 -99268027 + MTEa LTR MaLR 1 227 -152 8 752 207 98 195 0 chr12 21989714 21989755 -99267775 + L3 LINE CR1 915 963 -3526 8 752 2201 195 76 2 chr12 21989776 21990238 -99267292 - RLTR1 LTR ERV1 0 624 129 8 752 226 273 73 0 chr12 21990531 21990586 -99266944 + MIRm SINE MIR 97 155 -121 8 752 381 286 35 21 chr12 21990985 21991128 -99266402 - MLT1N2 LTR MaLR -5 557 413 8 752 429 240 224 68 chr12 21991637 21991827 -99265703 + RMER10A LTR ERVL 66 300 -142 8 752 851 94 8 0 chr12 21991827 21991954 -99265576 + (TC)n Simple_repeat Simple_repeat 1 128 0 8 752 429 240 224 68 chr12 21991954 21992089 -99265441 + RMER10A LTR ERVL 301 442 0 8 752 540 0 0 0 chr12 21992189 21992249 -99265281 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 752 544 241 115 20 chr12 21992257 21992405 -99265125 - RSINE1 SINE B4 -2 163 2 8 752 6031 72 34 5 chr12 21992927 21993712 -99263818 + RLTR13C2 LTR ERVK 1 808 0 8 752 1419 234 11 61 chr12 21993831 21994026 -99263504 + MTD LTR MaLR 1 188 -231 8 752 840 255 38 5 chr12 21994026 21994235 -99263295 + B3 SINE B2 1 216 0 8 752 1419 234 11 61 chr12 21994235 21994399 -99263131 + MTD LTR MaLR 189 341 -78 8 752 3449 87 4 11 chr12 21994399 21994866 -99262664 - MMVL30-int LTR ERV1 -2519 1179 716 8 752 277 96 19 0 chr12 21995159 21995211 -99262319 - MMVL30-int LTR ERV1 -2922 377 325 8 752 6225 59 22 24 chr12 21995237 21996068 -99261462 - RLTR6-int LTR ERV1 -6949 829 1 8 752 3831 48 108 34 chr12 21996069 21996631 -99260899 - RLTR6_Mm LTR ERV1 -50 604 1 8 752 1429 170 180 140 chr12 21996643 21997087 -99260443 + MT2A LTR ERVL 1 462 -71 8 752 3797 70 2 86 chr12 21997197 21997604 -99259926 - RLTR1B LTR ERV1 0 512 145 8 752 1214 62 0 0 chr12 21997604 21997750 -99259780 - B1_Mus2 SINE Alu 0 147 2 8 752 3797 70 2 86 chr12 21997750 21997901 -99259629 - RLTR1B LTR ERV1 -368 144 1 8 752 839 106 8 8 chr12 21997901 21998034 -99259496 - RMER17D2 LTR ERVK -4 805 673 8 752 847 76 34 0 chr12 21998037 21998155 -99259375 - RMER17D2 LTR ERVK -687 122 1 8 752 392 292 177 0 chr12 21998162 21998275 -99259255 + RSINE1 SINE B4 4 136 -29 8 752 489 354 38 0 chr12 21998325 21998537 -99258993 + L1MD LINE L1 5597 5816 -543 8 752 189 0 0 0 chr12 21998593 21998614 -99258916 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 752 573 15 0 0 chr12 21998614 21998679 -99258851 + (GA)n Simple_repeat Simple_repeat 2 67 0 8 752 1059 101 0 0 chr12 21998751 21998889 -99258641 - B1_Mus1 SINE Alu -10 138 1 8 752 186 43 0 0 chr12 21998912 21998935 -99258595 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 752 759 265 14 60 chr12 21998940 21999157 -99258373 - ID_B1 SINE B4 -15 209 3 8 752 453 162 0 0 chr12 22001383 22001494 -99256036 + GA-rich Low_complexity Low_complexity 1 111 0 1 752 909 19 0 0 chr12 22001645 22001752 -99255778 + (TC)n Simple_repeat Simple_repeat 2 108 0 2 752 329 241 178 13 chr12 22001758 22001879 -99255651 - B1_Mur2 SINE Alu -13 134 1 3 752 788 211 99 10 chr12 22001906 22002098 -99255432 - B3 SINE B2 -5 211 3 4 752 299 243 123 111 chr12 22002346 22002517 -99255013 - MLT1F1 LTR MaLR -256 313 141 5 752 527 0 0 16 chr12 22002577 22002641 -99254889 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 6 752 778 155 39 0 chr12 22002641 22002770 -99254760 - B1_Mus1 SINE Alu -12 136 3 7 752 374 165 0 12 chr12 22003110 22003190 -99254340 + C-rich Low_complexity Low_complexity 3 81 0 8 752 783 261 9 65 chr12 22003997 22004041 -99253489 + MTE2b LTR MaLR 1 41 -338 9 752 689 194 169 50 chr12 22004041 22004242 -99253288 - URR1A DNA MER1_type -1 225 1 1 752 783 265 8 57 chr12 22004242 22004531 -99252999 + MTE2b LTR MaLR 42 372 -7 9 752 283 235 0 29 chr12 22005019 22005089 -99252441 + MT2A LTR ERVL 9 76 -457 1 752 876 119 0 0 chr12 22006199 22006342 -99251188 + URR1B DNA MER1_type 83 225 0 1 752 651 290 41 45 chr12 22006622 22006914 -99250616 - B4A SINE B4 0 292 2 1 752 315 0 0 0 chr12 22007092 22007127 -99250403 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 752 229 342 13 0 chr12 22007622 22007701 -99249829 + MIRb SINE MIR 34 113 -155 1 752 318 296 37 0 chr12 22007715 22007823 -99249707 - PB1D7 SINE Alu -6 114 3 1 752 191 293 94 8 chr12 22008010 22008127 -99249403 - L2c LINE L2 -223 3164 3038 1 752 711 230 30 18 chr12 22008207 22008371 -99249159 + B3A SINE B2 3 168 -30 1 752 571 225 14 40 chr12 22008938 22009127 -99248403 - B3 SINE B2 0 195 17 1 752 428 225 73 24 chr12 22009160 22009283 -99248247 - B1F1 SINE Alu 0 149 21 2 752 398 225 12 0 chr12 22009282 22009362 -99248168 - RSINE1 SINE B4 -32 133 53 2 752 334 259 0 0 chr12 22009374 22009455 -99248075 - PB1D10 SINE Alu -7 110 30 2 752 630 60 0 0 chr12 22009528 22009612 -99247918 + B2_Mm2 SINE B2 3 86 -109 2 752 1083 89 0 0 chr12 22009631 22009810 -99247720 + (GA)n Simple_repeat Simple_repeat 1 179 0 2 752 399 173 0 0 chr12 22011115 22011196 -99246334 + CT-rich Low_complexity Low_complexity 4 84 0 2 752 601 172 85 50 chr12 22011200 22011341 -99246189 - B1_Mur3 SINE Alu 0 149 4 2 752 1763 148 10 10 chr12 22011346 22011660 -99245870 + MTC LTR MaLR 108 421 0 2 752 195 295 78 26 chr12 22011662 22011777 -99245753 - MIRb SINE MIR -125 143 23 2 752 215 273 0 0 chr12 22011883 22011938 -99245592 + C-rich Low_complexity Low_complexity 3 57 0 2 752 691 233 0 0 chr12 22012615 22012744 -99244786 - RSINE1 SINE B4 -34 131 3 3 752 657 237 55 30 chr12 22012972 22013172 -99244358 - B4A SINE B4 -86 206 2 3 752 252 0 0 0 chr12 22013223 22013251 -99244279 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 752 680 207 7 21 chr12 22015198 22015341 -99242189 + ID_B1 SINE B4 77 217 -7 3 752 499 197 56 32 chr12 22015373 22015499 -99242031 + B1_Mur3 SINE Alu 9 137 -12 3 752 693 63 0 0 chr12 22015509 22015604 -99241926 + (CA)n Simple_repeat Simple_repeat 2 96 0 3 752 189 0 0 0 chr12 22015611 22015632 -99241898 + (CAGAGA)n Simple_repeat Simple_repeat 4 24 0 3 752 494 241 60 0 chr12 22015844 22015977 -99241553 - ID_B1 SINE B4 -2 222 82 3 752 234 0 0 0 chr12 22015996 22016022 -99241508 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 752 903 56 8 0 chr12 22016054 22016179 -99241351 - B1_Mm SINE Alu 0 147 22 3 752 535 236 47 13 chr12 22016256 22016406 -99241124 - B3 SINE B2 -4 212 58 4 752 365 252 0 34 chr12 22016592 22016696 -99240834 + B1_Mur4 SINE Alu 9 110 -10 4 752 282 29 0 0 chr12 22016696 22016731 -99240799 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 752 360 252 0 35 chr12 22016731 22016743 -99240787 + PB1D9 SINE Alu 111 120 0 4 752 495 87 0 0 chr12 22017447 22017516 -99240014 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 4 752 654 13 0 0 chr12 22018508 22018583 -99238947 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 753 271 246 0 0 chr12 22020904 22020973 -99236557 + CT-rich Low_complexity Low_complexity 1 69 0 4 753 993 195 32 5 chr12 22021186 22021402 -99236128 + URR1B DNA MER1_type 1 222 -3 4 753 249 303 53 8 chr12 22021446 22021579 -99235951 + MER33 DNA MER1_type 186 324 0 4 753 299 217 263 30 chr12 22022043 22022176 -99235354 + RSINE1 SINE B4 1 164 -1 4 753 1404 58 3 0 chr12 22022864 22023215 -99234315 + (TTCCC)n Simple_repeat Simple_repeat 1 352 0 4 753 216 163 0 0 chr12 22023219 22023262 -99234268 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 753 2320 93 0 58 chr12 22023273 22023616 -99233914 - ORR1A2 LTR MaLR -4 323 1 5 753 980 124 0 0 chr12 22023747 22023884 -99233646 - B1_Mur4 SINE Alu -13 137 1 5 753 441 291 65 16 chr12 22023906 22024091 -99233439 - B3A SINE B2 -3 195 2 5 753 632 268 14 67 chr12 22024108 22024316 -99233214 - B4A SINE B4 -72 220 24 5 753 836 230 23 37 chr12 22025224 22025441 -99232089 - ID_B1 SINE B4 -8 216 3 5 753 866 186 0 0 chr12 22025488 22025633 -99231897 - B1_Mur4 SINE Alu -5 145 1 5 753 251 240 147 0 chr12 22025639 22025714 -99231816 - PB1D10 SINE Alu -20 97 12 5 753 597 14 0 0 chr12 22027010 22027080 -99230450 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 753 37526 63 4 2 chr12 22027918 22034065 -99223465 - L1Md_F3 LINE L1 0 6584 469 5 753 471 18 0 0 chr12 22035541 22035597 -99221933 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 753 255 258 111 22 chr12 22036199 22036328 -99221202 - MIR SINE MIR -66 202 65 6 753 697 256 24 0 chr12 22036783 22036947 -99220583 - B3A SINE B2 -30 168 1 6 753 2120 133 44 0 chr12 22036955 22037294 -99220236 - L1_Mus3 LINE L1 -6 6632 6279 6 753 366 246 252 0 chr12 22037304 22037565 -99219965 - L1MC1 LINE L1 0 6333 6012 6 753 2561 59 68 0 chr12 22037590 22037878 -99219652 + IAPLTR4 LTR ERVK 1 288 -57 6 753 440 18 18 0 chr12 22037878 22037935 -99219595 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 753 2561 59 68 0 chr12 22037935 22037969 -99219561 + IAPLTR4 LTR ERVK 289 343 -2 6 753 624 181 15 23 chr12 22037974 22038104 -99219426 + IAPLTR3-int LTR ERVK 7 135 -6686 6 753 776 213 44 52 chr12 22038103 22038351 -99219179 + IAPLTR3-int LTR ERVK 821 1066 -5755 6 753 647 143 141 104 chr12 22038453 22038744 -99218786 + RLTR45-int LTR ERVK 2175 2307 -4937 6 753 267 231 124 62 chr12 22038784 22038881 -99218649 + ETnERV2-int LTR ERVK 586 688 -5449 6 753 451 203 89 0 chr12 22038865 22038988 -99218542 + ETnERV2-int LTR ERVK 1721 1854 -5552 6 753 680 219 379 30 chr12 22038997 22039219 -99218311 + ETnERV2-int LTR ERVK 2454 2753 -4653 6 753 3382 145 151 3 chr12 22039245 22039867 -99217663 + ETnERV2-int LTR ERVK 3567 4280 -3126 6 753 500 185 12 35 chr12 22039863 22039988 -99217542 + MMETn-int LTR ERVK 2357 2464 -2380 6 753 818 102 28 49 chr12 22040000 22040144 -99217386 + MMERVK10C-int LTR ERVK 4530 4670 -2911 7 753 3304 95 2 16 chr12 22040402 22040851 -99216679 + MMERVK10C-int LTR ERVK 5203 5645 -1936 7 753 3452 88 0 4 chr12 22040839 22041295 -99216235 + MMERVK10C-int LTR ERVK 5761 6214 -1367 7 753 4438 214 7 11 chr12 22041278 22042157 -99215373 + IAPLTR3-int LTR ERVK 5927 6801 -20 7 753 2934 35 0 17 chr12 22042157 22042504 -99215026 + IAPLTR4 LTR ERVK 1 341 -4 7 753 466 212 32 4 chr12 22042973 22043231 -99214299 + (TG)n Simple_repeat Simple_repeat 1 265 0 7 753 458 193 22 17 chr12 22043251 22043430 -99214100 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 753 450 36 0 0 chr12 22043657 22043713 -99213817 + (TAA)n Simple_repeat Simple_repeat 2 57 0 7 753 220 204 26 26 chr12 22043746 22043897 -99213633 + A-rich Low_complexity Low_complexity 3 153 0 7 753 673 291 41 72 chr12 22043903 22044011 -99213519 - RLTR11A2 LTR ERVK -85 442 335 7 753 1218 61 0 0 chr12 22044011 22044158 -99213372 - B1_Mm SINE Alu 0 147 1 7 753 673 291 41 72 chr12 22044158 22044368 -99213162 - RLTR11A2 LTR ERVK -193 334 134 7 753 459 52 0 0 chr12 22044549 22044607 -99212923 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 7 753 312 188 16 8 chr12 22044608 22044737 -99212793 + (TA)n Simple_repeat Simple_repeat 1 130 0 7 753 258 268 21 0 chr12 22044737 22044834 -99212696 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 7 753 681 214 48 26 chr12 22044841 22045036 -99212494 + Lx2B LINE L1 6611 6800 -176 8 753 22 35 0 0 chr12 22045052 22045081 -99212449 + AT_rich Low_complexity Low_complexity 1 29 0 8 753 633 61 0 0 chr12 22045102 22045184 -99212346 + (TA)n Simple_repeat Simple_repeat 2 83 0 8 753 816 40 0 0 chr12 22045185 22045285 -99212245 + (GA)n Simple_repeat Simple_repeat 1 100 0 8 753 2211 241 71 14 chr12 22045896 22046900 -99210630 + L1_Mur2 LINE L1 1086 2082 -3798 8 753 587 186 18 0 chr12 22047117 22047230 -99210300 - B1_Mus1 SINE Alu -32 116 2 8 753 298 267 0 11 chr12 22047515 22047606 -99209924 - ORR1C2 LTR MaLR -2 382 293 8 753 300 281 32 28 chr12 22047756 22047955 -99209575 - MMSAT4 Satellite Satellite -23 199 1 8 753 413 299 75 44 chr12 22047898 22048192 -99209338 - MurSatRep1 Unknown Unknown 0 2137 1835 8 753 2883 92 2 5 chr12 22048208 22048610 -99208920 - L1_Mus1 LINE L1 -1 6566 6166 8 753 425 296 2 2 chr12 22048668 22048970 -99208560 - MMSAT4 Satellite Satellite -5 302 1 9 753 501 328 33 33 chr12 22048910 22049213 -99208317 - MurSatRep1 Unknown Unknown -88 2049 1747 9 753 319 280 50 50 chr12 22049167 22049306 -99208224 - MMSAT4 Satellite Satellite 0 168 30 9 753 538 307 61 39 chr12 22049249 22050121 -99207409 - MurSatRep1 Unknown Unknown 0 2137 1691 9 753 475 257 22 22 chr12 22050090 22050229 -99207301 - MMSAT4 Satellite Satellite 0 168 30 9 753 310 316 36 41 chr12 22050164 22050385 -99207145 - MurSatRep1 Unknown Unknown -84 2053 1834 9 753 8168 193 100 29 chr12 22050426 22051425 -99206105 - MurSatRep1 Unknown Unknown -2 2135 1127 9 753 1373 87 6 0 chr12 22051425 22051608 -99205922 + B2_Mm1a SINE B2 2 185 -8 9 753 8168 193 100 29 chr12 22051608 22052451 -99205079 - MurSatRep1 Unknown Unknown -1011 1126 177 9 753 320 323 65 0 chr12 22052451 22052575 -99204955 + B1_Mur2 SINE Alu 1 132 -17 9 753 8168 193 100 29 chr12 22052575 22052724 -99204806 - MurSatRep1 Unknown Unknown -1961 176 3 9 753 280 250 25 41 chr12 22053142 22053263 -99204267 + Lx4B LINE L1 6936 7054 -4 9 753 1234 323 36 60 chr12 22053367 22054085 -99203445 - MTD-int LTR MaLR -108 1262 562 1 753 5879 239 16 8 chr12 22054095 22055505 -99202025 + Lx4B LINE L1 5637 7057 -1 1 753 906 116 0 45 chr12 22055509 22055663 -99201867 + B1_Mus2 SINE Alu 1 147 0 1 753 183 42 0 0 chr12 22055724 22055748 -99201782 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 753 396 40 0 0 chr12 22055787 22055837 -99201693 + (T)n Simple_repeat Simple_repeat 1 50 0 1 753 354 375 34 13 chr12 22055837 22056072 -99201458 - MTD-int LTR MaLR -1107 263 24 1 753 327 85 0 0 chr12 22056091 22056138 -99201392 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 753 274 335 126 16 chr12 22056150 22056341 -99201189 - MTD LTR MaLR -16 403 192 1 753 1742 171 73 22 chr12 22056343 22056417 -99201113 + RLTR9D LTR ERVK 1 74 -329 1 753 3328 28 10 5 chr12 22056417 22056811 -99200719 - MTA_Mm LTR MaLR 0 396 1 1 753 1742 171 73 22 chr12 22056811 22057107 -99200423 + RLTR9D LTR ERVK 75 390 -13 1 753 333 355 52 21 chr12 22057116 22057309 -99200221 - MTD LTR MaLR -206 213 15 1 753 626 36 0 0 chr12 22058695 22058778 -99198752 - L1Md_T LINE L1 0 6582 6500 1 753 477 251 19 34 chr12 22059497 22059703 -99197827 + L1_Mur3 LINE L1 904 1106 -6622 1 753 548 279 158 9 chr12 22059999 22060454 -99197076 + L1_Mur3 LINE L1 1314 1836 -4044 1 753 531 90 34 0 chr12 22060983 22061072 -99196458 + RMER17D LTR ERVK 1 92 -797 1 753 328 323 121 0 chr12 22061118 22061316 -99196214 + MER63C DNA AcHobo 472 693 -237 1 753 232 229 0 62 chr12 22061283 22061348 -99196182 - MER63D DNA AcHobo -464 597 537 1 753 547 299 49 9 chr12 22061387 22061613 -99195917 + MER63C DNA AcHobo 691 925 -5 1 753 370 277 85 28 chr12 22061981 22062122 -99195408 + B1F SINE Alu 1 149 0 1 753 432 0 0 0 chr12 22062758 22062806 -99194724 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 753 1188 102 0 4 chr12 22062806 22063063 -99194467 + (TTTC)n Simple_repeat Simple_repeat 1 255 0 1 753 1079 97 7 0 chr12 22063065 22063209 -99194321 - B1_Mm SINE Alu 0 147 3 1 753 374 240 41 8 chr12 22063730 22063852 -99193678 + Lx3B LINE L1 6848 6973 0 1 753 489 47 0 0 chr12 22064094 22064158 -99193372 + (TTTA)n Simple_repeat Simple_repeat 3 66 0 1 753 1028 119 6 0 chr12 22064158 22064317 -99193213 - B2_Mm1a SINE B2 -33 160 1 1 753 245 194 153 0 chr12 22064812 22064884 -99192646 + MER5A1 DNA MER1_type 13 95 -71 1 753 533 258 52 104 chr12 22065115 22065327 -99192203 - ID_B1 SINE B4 -22 202 2 1 753 279 321 108 31 chr12 22065332 22065554 -99191976 - L2b LINE L2 -184 3242 3004 1 753 507 268 81 0 chr12 22065986 22066109 -99191421 - ETnERV2-int LTR ERVK -204 7202 7070 1 753 584 276 92 42 chr12 22066237 22066475 -99191055 + B4A SINE B4 5 254 -38 1 753 526 51 13 13 chr12 22066504 22066583 -99190947 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 753 273 79 0 0 chr12 22067130 22067168 -99190362 - MTC LTR MaLR -292 129 92 1 753 1303 207 92 87 chr12 22067389 22067435 -99190095 - MTD LTR MaLR 0 419 377 1 753 719 175 33 53 chr12 22067435 22067586 -99189944 + B1_Mus1 SINE Alu 1 148 0 1 753 1303 207 92 87 chr12 22067586 22067941 -99189589 - MTD LTR MaLR -43 376 16 1 753 501 49 24 12 chr12 22068079 22068161 -99189369 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 1 753 582 265 0 13 chr12 22068328 22068477 -99189053 + B1_Mm SINE Alu 1 147 0 1 753 356 183 0 0 chr12 22068922 22068982 -99188548 - B3 SINE B2 -87 129 70 1 753 377 89 0 0 chr12 22069235 22069291 -99188239 - RMER6D LTR ERVK -664 56 1 1 753 481 296 68 0 chr12 22069664 22069796 -99187734 + RSINE1 SINE B4 21 161 -4 1 753 2262 142 16 45 chr12 22070810 22071237 -99186293 + MTC LTR MaLR 1 415 -6 1 753 1377 99 5 5 chr12 22071865 22072057 -99185473 - B2_Mm2 SINE B2 -3 192 1 1 753 295 243 13 39 chr12 22072154 22072231 -99185299 - RSINE1 SINE B4 -40 125 51 1 753 973 170 0 0 chr12 22072319 22072466 -99185064 + B1_Mur1 SINE Alu 3 149 0 1 753 318 283 99 111 chr12 22072761 22073023 -99184507 + ORR1E LTR MaLR 101 359 0 1 753 186 302 122 44 chr12 22073033 22073123 -99184407 + L2b LINE L2 3228 3324 -51 1 753 384 59 0 0 chr12 22073163 22073214 -99184316 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 753 249 300 22 22 chr12 22073409 22073429 -99184101 - B4A SINE B4 -199 93 2 1 753 298 254 14 14 chr12 22073429 22073501 -99184029 - ID2 SINE ID -10 73 2 1 753 207 146 0 0 chr12 22073984 22074025 -99183505 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1 753 28 29 0 0 chr12 22074056 22074091 -99183439 + AT_rich Low_complexity Low_complexity 1 35 0 1 753 1322 94 16 0 chr12 22074183 22074374 -99183156 - B2_Mm2 SINE B2 -1 194 1 1 753 486 274 17 0 chr12 22074375 22074492 -99183038 - RSINE1 SINE B4 -44 121 3 1 753 523 206 10 10 chr12 22074699 22074802 -99182728 - B1_Mur2 SINE Alu -40 109 7 1 753 249 311 54 45 chr12 22074705 22074816 -99182714 - B4A SINE B4 -100 192 81 1 753 459 52 0 0 chr12 22074831 22074889 -99182641 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 753 332 244 52 20 chr12 22074934 22075032 -99182498 - B3 SINE B2 -84 114 8 1 753 195 42 0 0 chr12 22075256 22075280 -99182250 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 1 753 507 290 29 29 chr12 22075718 22075892 -99181638 + ID_B1 SINE B4 51 224 0 1 753 1156 252 36 3 chr12 22076936 22077238 -99180292 - MTD LTR MaLR -3 416 105 1 753 985 141 23 6 chr12 22077316 22077487 -99180043 + RMER17D LTR ERVK 714 887 -2 1 753 239 332 51 81 chr12 22078068 22078304 -99179226 - MT2A LTR ERVL -231 302 74 1 753 198 100 0 104 chr12 22078343 22078410 -99179120 + (TTAGGG)n Simple_repeat Simple_repeat 5 64 0 1 753 332 178 14 0 chr12 22078625 22078698 -99178832 + CT-rich Low_complexity Low_complexity 3 76 0 1 753 264 266 202 8 chr12 22078770 22078899 -99178631 - Lx8 LINE L1 -342 7131 6978 1 753 732 250 66 24 chr12 22079211 22079424 -99178106 + ID_B1 SINE B4 1 222 -2 1 753 864 196 173 0 chr12 22079760 22079985 -99177545 - Lx9 LINE L1 0 7644 7381 1 753 1038 97 0 7 chr12 22080037 22080183 -99177347 + B1_Mm SINE Alu 1 145 -2 1 753 200 83 16 62 chr12 22080191 22080255 -99177275 + A-rich Low_complexity Low_complexity 6 66 0 1 753 498 262 142 6 chr12 22080526 22080695 -99176835 + B3A SINE B2 3 194 -4 1 753 198 262 11 56 chr12 22081115 22081204 -99176326 + MER5B DNA MER1_type 32 116 -62 1 753 226 357 31 0 chr12 22081278 22081376 -99176154 - MER5A1 DNA MER1_type 0 166 66 1 753 269 370 15 30 chr12 22081441 22081572 -99175958 + MER3 DNA MER1_type 3 131 -78 1 753 272 250 0 0 chr12 22083276 22083348 -99174182 + B4A SINE B4 1 72 -220 1 753 561 64 0 0 chr12 22083439 22083517 -99174013 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 753 186 269 0 37 chr12 22083924 22083978 -99173552 + MIRm SINE MIR 110 161 -115 1 753 25 31 0 0 chr12 22086856 22086888 -99170642 + GC_rich Low_complexity Low_complexity 1 32 0 1 753 885 159 0 0 chr12 22088480 22088771 -99168759 + (CA)n Simple_repeat Simple_repeat 1 291 0 1 753 369 235 12 0 chr12 22088834 22088915 -99168615 - ID2 SINE ID 0 83 2 1 753 794 190 0 14 chr12 22089035 22089179 -99168351 + B1_Mur3 SINE Alu 2 143 -6 1 753 404 350 38 12 chr12 22089197 22089437 -99168093 + MER46C DNA MER2_type 92 337 -1 1 753 1469 230 80 8 chr12 22089663 22090049 -99167481 + MTD LTR MaLR 5 418 -1 1 753 1055 110 0 20 chr12 22090463 22090612 -99166918 - B1_Mus2 SINE Alu 0 147 2 1 753 510 207 18 18 chr12 22090662 22090775 -99166755 + PB1D9 SINE Alu 2 114 -6 1 753 357 175 16 0 chr12 22091659 22091722 -99165808 - B3 SINE B2 -64 152 89 1 753 1047 110 0 0 chr12 22091753 22091898 -99165632 - B1_Mus1 SINE Alu -2 146 2 1 753 514 196 0 30 chr12 22091898 22091998 -99165532 - B3 SINE B2 -117 99 3 1 753 369 238 0 0 chr12 22092014 22092115 -99165415 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 753 641 205 85 123 chr12 22092125 22092287 -99165243 - B3 SINE B2 0 216 45 1 753 712 186 20 27 chr12 22092458 22092607 -99164923 - B1_Mur1 SINE Alu -1 148 1 1 753 923 310 80 113 chr12 22092871 22093580 -99163950 + MER63C DNA AcHobo 240 925 -5 1 753 405 248 85 28 chr12 22093947 22094088 -99163442 + B1F SINE Alu 1 149 0 1 753 432 0 0 0 chr12 22094722 22094770 -99162760 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 753 948 178 0 0 chr12 22094774 22094954 -99162576 + CT-rich Low_complexity Low_complexity 1 180 0 1 753 1064 90 7 0 chr12 22094956 22095100 -99162430 - B1_Mm SINE Alu 0 147 3 1 753 426 229 32 16 chr12 22095623 22095747 -99161783 + Lx3B LINE L1 6848 6973 0 1 753 21 36 0 0 chr12 22095747 22095775 -99161755 + AT_rich Low_complexity Low_complexity 1 28 0 1 753 423 90 45 0 chr12 22095989 22096056 -99161474 - B2_Mm1a SINE B2 -21 172 103 1 753 420 20 0 0 chr12 22096126 22096175 -99161355 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 753 527 296 9 61 chr12 22096180 22096392 -99161138 - ID_B1 SINE B4 -22 202 2 1 753 242 311 92 33 chr12 22096397 22096618 -99160912 - L2b LINE L2 -184 3242 3004 1 753 532 252 81 0 chr12 22097050 22097173 -99160357 - ETnERV2-int LTR ERVK -204 7202 7070 1 753 584 301 78 53 chr12 22097301 22097582 -99159948 + B4A SINE B4 5 292 0 1 753 203 61 0 29 chr12 22097585 22097619 -99159911 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 753 2207 67 38 3 chr12 22097972 22098286 -99159244 + IAPLTR2b LTR ERVK 1 325 -2 1 753 50445 63 19 20 chr12 22098298 22104724 -99152806 + IAPEz-int LTR ERVK 60 6480 -1 1 753 2252 56 23 3 chr12 22104725 22105029 -99152501 + IAPLTR2b LTR ERVK 1 310 -17 1 753 279 116 0 0 chr12 22105237 22105280 -99152250 - MTC LTR MaLR -287 134 92 1 753 216 281 0 0 chr12 22105314 22105378 -99152152 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 753 392 288 13 131 chr12 22105454 22105690 -99151840 + ID_B1 SINE B4 15 222 -2 2 753 658 188 7 55 chr12 22105549 22105695 -99151835 + B1_Mus1 SINE Alu 10 148 0 2 753 1209 226 108 21 chr12 22105714 22106049 -99151481 - MTD LTR MaLR -40 379 16 2 753 1142 52 7 0 chr12 22106193 22106347 -99151183 + (TAGA)n Simple_repeat Simple_repeat 4 158 0 2 753 577 245 0 33 chr12 22106529 22106681 -99150849 + B1_Mm SINE Alu 1 147 0 2 753 208 176 20 0 chr12 22106787 22106838 -99150692 + (ATAAG)n Simple_repeat Simple_repeat 1 52 0 2 753 268 233 0 0 chr12 22107104 22107164 -99150366 - B3 SINE B2 -87 129 70 2 753 2146 151 17 44 chr12 22107378 22107787 -99149743 + MTC LTR MaLR 18 415 -6 2 753 1503 82 0 5 chr12 22108415 22108610 -99148920 - B2_Mm2 SINE B2 -1 194 1 2 753 296 253 13 39 chr12 22108698 22108776 -99148754 - RSINE1 SINE B4 -40 125 50 2 753 1011 157 0 0 chr12 22108863 22109010 -99148520 + B1_Mur1 SINE Alu 3 149 0 2 753 302 289 217 53 chr12 22109248 22109566 -99147964 + ORR1E LTR MaLR 1 370 0 2 753 567 0 0 0 chr12 22109703 22109766 -99147764 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 753 243 303 13 13 chr12 22109983 22110060 -99147470 - ID2 SINE ID -5 78 2 2 753 186 171 0 0 chr12 22110549 22110590 -99146940 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2 753 1694 236 45 15 chr12 22111410 22111814 -99145716 - MTD LTR MaLR -3 416 1 2 753 1500 265 8 38 chr12 22112106 22112445 -99145085 - ORR1D2 LTR MaLR -8 362 31 2 753 1276 124 81 9 chr12 22112445 22112656 -99144874 + URR1A DNA MER1_type 1 226 0 2 753 1500 265 8 38 chr12 22112656 22112689 -99144841 - ORR1D2 LTR MaLR -340 30 1 2 753 2135 115 38 18 chr12 22114366 22114765 -99142765 + RLTR44C LTR ERVK 1 449 0 2 753 1355 159 8 37 chr12 22114765 22115036 -99142494 + RLTR44-int LTR ERVK 1 254 -2558 2 753 1397 122 7 96 chr12 22115068 22115541 -99141989 + RLTR44-int LTR ERVK 794 1039 -1773 2 753 190 192 56 37 chr12 22116939 22116993 -99140537 + MIRc SINE MIR 79 133 -135 2 753 1075 215 5 0 chr12 22117154 22117368 -99140162 + B3 SINE B2 2 216 0 2 753 576 180 204 90 chr12 22117405 22117606 -99139924 - URR1B DNA MER1_type 0 225 2 2 753 217 226 38 0 chr12 22117659 22117712 -99139818 + MIRc SINE MIR 85 139 -129 2 753 1024 115 0 39 chr12 22118416 22118570 -99138960 + B1_Mus1 SINE Alu 1 148 0 2 753 285 140 0 0 chr12 22119005 22119062 -99138468 + (CCA)n Simple_repeat Simple_repeat 2 58 0 2 753 2080 158 57 26 chr12 22119122 22119511 -99138019 + MTC LTR MaLR 1 401 -20 2 753 275 251 85 106 chr12 22119981 22120124 -99137406 + L2c LINE L2 3149 3316 -71 2 753 1289 188 167 12 chr12 22120493 22120816 -99136714 + ORR1D1 LTR MaLR 1 373 -1 2 753 397 303 13 40 chr12 22120844 22120995 -99136535 + B1F SINE Alu 3 149 0 2 753 333 289 51 10 chr12 22121188 22121286 -99136244 + PB1D10 SINE Alu 3 104 -13 2 753 299 333 0 0 chr12 22121322 22121397 -99136133 + ID4_ SINE ID 9 83 0 2 753 793 132 221 85 chr12 22121744 22121860 -99135670 - URR1A DNA MER1_type 0 226 113 2 753 258 32 0 0 chr12 22121860 22121891 -99135639 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 753 1053 82 0 0 chr12 22121892 22122027 -99135503 - B1_Mm SINE Alu -12 135 1 2 753 793 132 221 85 chr12 22122027 22122107 -99135423 - URR1A DNA MER1_type -114 112 1 2 753 227 293 0 0 chr12 22122148 22122223 -99135307 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 2 753 510 228 186 34 chr12 22122496 22122673 -99134857 + B3 SINE B2 2 205 -11 2 753 1630 207 91 3 chr12 22123205 22123568 -99133962 - MTD LTR MaLR 0 419 25 2 753 4174 224 74 63 chr12 22123581 22124730 -99132800 - MTD-int LTR MaLR -6 1252 92 2 753 781 215 194 20 chr12 22124786 22125126 -99132404 + MTD LTR MaLR 3 419 0 2 753 483 230 51 51 chr12 22125132 22125288 -99132242 + MTD-int LTR MaLR 1 156 -1102 2 753 497 295 45 6 chr12 22125433 22125590 -99131940 + RSINE1 SINE B4 3 165 0 2 753 866 164 7 0 chr12 22125716 22125862 -99131668 - B1_Mus1 SINE Alu -1 147 1 2 753 672 219 0 16 chr12 22125920 22126041 -99131489 + PB1D9 SINE Alu 2 120 0 2 753 249 311 40 0 chr12 22126054 22126128 -99131402 + ID2 SINE ID 1 77 -6 2 753 662 250 90 27 chr12 22126606 22126828 -99130702 - B4A SINE B4 -54 238 3 2 753 366 263 47 158 chr12 22126841 22126955 -99130575 + MLT1B LTR MaLR 160 253 -137 2 753 2602 108 25 5 chr12 22126955 22127347 -99130183 - MTB LTR MaLR 0 400 1 2 753 366 263 47 158 chr12 22127347 22127422 -99130108 + MLT1B LTR MaLR 254 328 -62 2 753 268 260 71 80 chr12 22127567 22127630 -99129900 - PB1D10 SINE Alu -1 116 52 2 753 965 137 7 0 chr12 22127630 22127776 -99129754 + B1_Mus1 SINE Alu 1 147 -1 2 753 268 260 71 80 chr12 22127776 22127825 -99129705 - PB1D10 SINE Alu -66 51 5 2 753 258 219 172 0 chr12 22127789 22127853 -99129677 - ID_B1 SINE B4 -99 125 51 2 753 957 282 10 0 chr12 22128005 22128211 -99129319 + MTEa LTR MaLR 18 225 -154 2 753 190 122 195 0 chr12 22128425 22128466 -99129064 + L3 LINE CR1 915 963 -3526 2 753 192 273 55 0 chr12 22128692 22128747 -99128783 + MIRc SINE MIR 94 151 -117 2 753 181 310 95 26 chr12 22128837 22128953 -99128577 - MER5A DNA MER1_type -4 185 62 2 753 342 277 57 28 chr12 22129143 22129284 -99128246 - MLT1N2 LTR MaLR -5 557 413 2 753 3401 79 18 0 chr12 22129319 22129764 -99127766 + MURVY-LTR LTR ERV1 3 455 -64 2 753 315 314 58 95 chr12 22130268 22130511 -99127019 + RMER10A LTR ERVL 65 298 -144 2 753 353 231 98 77 chr12 22130500 22130683 -99126847 + RMER10A LTR ERVL 256 442 0 2 753 540 0 0 0 chr12 22130800 22130860 -99126670 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 753 602 221 115 20 chr12 22130864 22131012 -99126518 - RSINE1 SINE B4 -2 163 2 2 753 867 198 24 35 chr12 22131635 22131831 -99125699 + MTD LTR MaLR 1 195 -212 2 753 815 245 97 0 chr12 22131831 22132027 -99125503 + B3 SINE B2 1 215 -1 2 753 800 252 59 20 chr12 22132068 22132270 -99125260 + MTD LTR MaLR 196 405 -14 2 753 4094 66 2 0 chr12 22132674 22133176 -99124354 - RLTR1C LTR ERV1 0 503 1 2 753 822 149 14 41 chr12 22133231 22133378 -99124152 + B1_Mus1 SINE Alu 6 148 0 2 753 316 269 9 88 chr12 22133279 22133393 -99124137 + RLTR25A LTR ERVK 523 627 -476 2 753 1347 78 5 40 chr12 22133425 22133625 -99123905 + B2_Mm2 SINE B2 3 195 0 2 753 1054 90 0 0 chr12 22133671 22133805 -99123725 + B1_Mus1 SINE Alu 2 135 -13 2 753 216 0 0 0 chr12 22133805 22133829 -99123701 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 753 195 42 0 0 chr12 22133829 22133852 -99123678 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2 753 640 213 88 79 chr12 22133868 22134050 -99123480 + B3 SINE B2 2 172 -23 2 753 510 17 0 0 chr12 22134125 22134184 -99123346 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 753 405 0 0 0 chr12 22136432 22136477 -99121053 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 753 363 78 0 0 chr12 22136478 22136529 -99121001 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 2 753 230 0 0 32 chr12 22136683 22136714 -99120816 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 2 753 315 0 0 0 chr12 22136722 22136757 -99120773 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 2 753 428 214 157 33 chr12 22136763 22136884 -99120646 - B1_Mur2 SINE Alu -13 136 1 2 753 791 233 83 0 chr12 22136912 22137105 -99120425 - B3 SINE B2 -5 211 3 2 753 277 293 81 101 chr12 22137331 22137540 -99119990 - MLT1F2 LTR MaLR -226 334 130 2 753 567 0 0 0 chr12 22137596 22137659 -99119871 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2 753 623 223 31 0 chr12 22137659 22137789 -99119741 - B1_Mus1 SINE Alu -12 136 3 2 753 814 112 5 38 chr12 22138140 22138325 -99119205 + C-rich Low_complexity Low_complexity 2 180 0 2 753 846 166 160 0 chr12 22139193 22139380 -99118150 - URR1A DNA MER1_type -9 217 1 2 753 835 237 199 30 chr12 22139380 22139675 -99117855 + MTE2b LTR MaLR 35 379 0 2 753 274 254 0 29 chr12 22140175 22140244 -99117286 + MT2A LTR ERVL 9 75 -458 2 753 243 331 82 27 chr12 22140524 22140670 -99116860 + RMER15 LTR ERVL 416 569 -6 2 753 866 147 0 7 chr12 22141355 22141499 -99116031 + URR1B DNA MER1_type 83 225 0 2 753 742 278 48 42 chr12 22141780 22142069 -99115461 - B4A SINE B4 0 292 2 2 753 327 310 8 41 chr12 22143230 22143351 -99114179 + MIRb SINE MIR 2 118 -150 2 753 395 296 28 0 chr12 22143359 22143467 -99114063 - PB1D7 SINE Alu -6 114 4 2 753 286 256 85 8 chr12 22143655 22143773 -99113757 - L2c LINE L2 -223 3164 3038 2 753 692 204 23 120 chr12 22143853 22144070 -99113460 + B3A SINE B2 3 198 0 2 753 620 271 68 16 chr12 22144580 22144771 -99112759 - B3 SINE B2 -1 215 15 2 753 450 276 22 22 chr12 22144802 22144939 -99112591 - B1F1 SINE Alu 0 149 13 2 753 422 203 14 0 chr12 22144930 22145004 -99112526 - RSINE1 SINE B4 -38 127 53 2 753 386 244 0 0 chr12 22145009 22145087 -99112443 - PB1D10 SINE Alu 0 117 40 2 753 552 132 0 52 chr12 22145169 22145253 -99112277 + B2_Mm2 SINE B2 3 86 -109 2 753 804 21 0 0 chr12 22145253 22145347 -99112183 + (GA)n Simple_repeat Simple_repeat 2 95 0 2 753 552 132 0 52 chr12 22145347 22145358 -99112172 + B2_Mm2 SINE B2 87 93 -102 2 753 2479 129 39 3 chr12 22145423 22145812 -99111718 + RLTR9E LTR ERVK 1 403 -6 2 753 196 400 12 0 chr12 22145930 22146010 -99111520 + L2c LINE L2 3298 3378 -9 2 753 486 0 0 0 chr12 22147178 22147232 -99110298 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 753 324 0 0 0 chr12 22147232 22147267 -99110263 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 753 319 333 39 79 chr12 22147267 22147394 -99110136 - RSINE1 SINE B4 -10 155 34 2 753 771 264 113 39 chr12 22147501 22147812 -99109718 - MTE2a LTR MaLR -14 405 35 3 753 1319 176 0 5 chr12 22147812 22148035 -99109495 - URR1B DNA MER1_type -3 222 1 3 753 715 268 106 69 chr12 22148035 22148066 -99109464 - MTE2a LTR MaLR -342 77 50 3 753 879 172 14 0 chr12 22148066 22148211 -99109319 + B1_Mus1 SINE Alu 1 147 -1 3 753 786 222 99 11 chr12 22148240 22148431 -99109099 + B3 SINE B2 3 210 -6 3 753 35 0 0 0 chr12 22148440 22148475 -99109055 + AT_rich Low_complexity Low_complexity 1 35 0 3 753 273 146 83 0 chr12 22148479 22148527 -99109003 - MTE2a LTR MaLR -327 52 1 3 753 260 315 72 30 chr12 22149575 22149625 -99107905 - MIRc SINE MIR -75 193 143 3 753 2238 156 11 115 chr12 22149625 22149737 -99107793 + MTC LTR MaLR 1 114 -307 3 753 329 0 0 24 chr12 22149737 22149779 -99107751 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 753 333 0 0 0 chr12 22149779 22149815 -99107715 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 753 2238 156 11 115 chr12 22149815 22149851 -99107679 + MTC LTR MaLR 115 115 -306 3 753 643 201 49 21 chr12 22149851 22149993 -99107537 - B1_Mur3 SINE Alu 0 149 4 3 753 2238 156 11 115 chr12 22149993 22150312 -99107218 + MTC LTR MaLR 115 420 -1 3 753 260 315 72 30 chr12 22150312 22150428 -99107102 - MIRc SINE MIR -126 142 20 3 753 225 264 0 40 chr12 22150526 22150601 -99106929 + C-rich Low_complexity Low_complexity 5 76 0 3 94 277 311 88 29 chr12 22151044 22151202 -99106328 + MER2B DNA MER2_type 8 187 -149 3 754 684 256 0 0 chr12 22151256 22151385 -99106145 - RSINE1 SINE B4 -34 131 3 3 754 613 233 61 36 chr12 22151613 22151809 -99105721 - B4A SINE B4 -86 206 6 3 754 1293 161 9 18 chr12 22152631 22152859 -99104671 - URR1A DNA MER1_type 0 226 1 3 754 700 177 16 8 chr12 22154364 22154489 -99103041 + ID_B1 SINE B4 92 217 -7 3 754 579 207 48 32 chr12 22154522 22154647 -99102883 + B1_Mur3 SINE Alu 10 136 -13 3 754 252 100 0 0 chr12 22154658 22154698 -99102832 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 754 188 61 61 0 chr12 22154708 22154741 -99102789 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 754 2365 101 0 48 chr12 22154969 22155322 -99102208 - RLTR10D LTR ERVK -23 336 1 3 754 13247 52 2 0 chr12 22155322 22156891 -99100639 - IAP-d-int LTR ERVK 0 6542 4970 3 754 8123 61 29 1 chr12 22156889 22157902 -99099628 - IAP-d-int LTR ERVK -5486 1056 16 3 754 233 283 113 32 chr12 22157902 22157917 -99099613 - B1F SINE Alu -15 134 120 3 754 2552 106 0 45 chr12 22157917 22158293 -99099237 - RLTR10D LTR ERVK 0 359 1 3 754 233 283 113 32 chr12 22158293 22158401 -99099129 - B1F SINE Alu -30 119 1 3 754 889 89 8 0 chr12 22158442 22158565 -99098965 - B1_Mm SINE Alu 0 147 24 3 754 454 259 118 31 chr12 22158642 22158837 -99098693 - B3 SINE B2 0 216 5 3 754 458 231 0 9 chr12 22159020 22159129 -99098401 + PB1D7 SINE Alu 13 120 0 3 754 344 103 17 0 chr12 22159795 22159853 -99097677 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 3 754 513 0 0 0 chr12 22160853 22160910 -99096620 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 754 2194 194 21 49 chr12 22162041 22162517 -99095013 + RLTR1D LTR ERV1 135 605 0 3 754 17035 238 36 12 chr12 22162548 22166285 -99091245 + MMERGLN-int LTR ERV1 34 3858 -3698 3 754 2181 191 25 42 chr12 22166334 22166783 -99090747 + RLTR1D LTR ERV1 165 605 0 3 754 210 174 0 21 chr12 22168042 22168089 -99089441 + CT-rich Low_complexity Low_complexity 3 48 0 3 754 1090 189 28 5 chr12 22168295 22168513 -99089017 + URR1B DNA MER1_type 2 224 -1 3 754 25 0 0 0 chr12 22169178 22169203 -99088327 + AT_rich Low_complexity Low_complexity 1 25 0 3 754 540 276 32 13 chr12 22169208 22169366 -99088164 + RSINE1 SINE B4 1 161 -4 3 754 432 37 0 0 chr12 22170065 22170119 -99087411 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 754 2327 87 0 80 chr12 22170131 22170482 -99087048 - ORR1A2 LTR MaLR -4 323 1 3 754 237 217 0 0 chr12 22170482 22170528 -99087002 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 754 789 159 0 0 chr12 22170614 22170746 -99086784 - B1_Mur4 SINE Alu -13 137 6 3 754 495 0 0 0 chr12 22171656 22171711 -99085819 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 754 207 0 0 0 chr12 22171711 22171733 -99085797 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 754 199 279 109 20 chr12 22172308 22172437 -99085093 - MIR SINE MIR -66 202 65 3 754 605 294 25 0 chr12 22172892 22173055 -99084475 - B3A SINE B2 -30 168 2 3 754 2038 114 60 9 chr12 22173066 22173401 -99084129 - L1_Mus3 LINE L1 -8 6630 6279 3 754 458 238 252 4 chr12 22173411 22173677 -99083853 - L1MC1 LINE L1 0 6333 6002 3 754 251 248 44 44 chr12 22174036 22174150 -99083380 + L1M1 LINE L1 5786 5899 -401 3 754 426 202 23 23 chr12 22174154 22174466 -99083064 + (TG)n Simple_repeat Simple_repeat 1 311 0 3 754 713 134 20 7 chr12 22174478 22174628 -99082902 + (TG)n Simple_repeat Simple_repeat 1 152 0 3 754 266 97 51 70 chr12 22174877 22175033 -99082497 + (TAA)n Simple_repeat Simple_repeat 2 154 0 3 754 24 53 0 0 chr12 22175036 22175074 -99082456 + AT_rich Low_complexity Low_complexity 1 38 0 3 754 456 306 41 92 chr12 22175088 22175194 -99082336 - RLTR11A2 LTR ERVK -96 432 334 3 754 1148 82 0 0 chr12 22175194 22175341 -99082189 - B1_Mm SINE Alu 0 147 1 3 754 560 284 43 24 chr12 22175341 22175551 -99081979 - RLTR11A2 LTR ERVK -181 346 132 3 754 1685 126 94 52 chr12 22175726 22176035 -99081495 - RLTRETN_Mm LTR ERVK 0 322 1 3 754 9127 118 8 19 chr12 22176035 22177438 -99080092 - MMETn-int LTR ERVK 0 4844 3457 3 754 14242 66 11 34 chr12 22177452 22179415 -99078115 - MMETn-int LTR ERVK -2925 1919 2 3 754 1963 119 12 51 chr12 22179416 22179751 -99077779 - RLTRETN_Mm LTR ERVK 0 322 1 3 754 412 202 0 20 chr12 22179786 22180042 -99077488 + (TA)n Simple_repeat Simple_repeat 1 250 0 3 754 578 219 59 12 chr12 22180084 22180257 -99077273 + Lx2B LINE L1 6623 6796 -212 3 754 22 35 0 0 chr12 22180268 22180297 -99077233 + AT_rich Low_complexity Low_complexity 1 29 0 3 754 543 69 0 0 chr12 22180319 22180391 -99077139 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 754 189 0 0 0 chr12 22180391 22180411 -99077119 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 754 490 247 47 29 chr12 22180976 22181147 -99076383 + L1_Mur3 LINE L1 1048 1221 -6507 3 754 2092 250 71 8 chr12 22181132 22182063 -99075467 + L1_Mur3 LINE L1 1087 2082 -3798 3 754 828 160 21 0 chr12 22182335 22182479 -99075051 - B1_Mus1 SINE Alu 0 148 2 3 754 277 282 0 0 chr12 22182768 22182846 -99074684 - ORR1C2 LTR MaLR -14 370 293 3 754 342 301 8 8 chr12 22183100 22183234 -99074296 - MMSAT4 Satellite Satellite 0 168 35 3 754 3037 94 0 0 chr12 22183253 22183658 -99073872 - L1_Mus1 LINE L1 0 6567 6163 3 754 464 267 21 19 chr12 22183708 22184514 -99073016 - MMSAT4 Satellite Satellite 0 808 1 3 754 502 320 30 30 chr12 22184454 22184754 -99072776 - MurSatRep1 Unknown Unknown -88 2049 1750 3 754 7977 192 39 34 chr12 22184795 22185792 -99071738 - MurSatRep1 Unknown Unknown -2 2135 1126 3 754 1150 144 6 0 chr12 22185792 22185973 -99071557 + B2_Mm1a SINE B2 2 183 -10 3 754 7977 192 39 34 chr12 22185973 22186817 -99070713 - MurSatRep1 Unknown Unknown -1012 1125 284 3 754 371 288 56 35 chr12 22186817 22186961 -99070569 + B1_Mur2 SINE Alu 1 147 -2 3 754 537 203 16 8 chr12 22186967 22187091 -99070439 - MurSatRep1 Unknown Unknown -2011 126 2 3 754 293 236 18 45 chr12 22187509 22187620 -99069910 + Lx4B LINE L1 6947 7054 -4 3 754 185 132 26 0 chr12 22187629 22187667 -99069863 + GA-rich Low_complexity Low_complexity 2 40 0 3 754 1199 330 35 58 chr12 22187727 22188445 -99069085 - ORR1D-int LTR MaLR -108 1262 562 3 754 5170 239 49 22 chr12 22188455 22189836 -99067694 + Lx4B LINE L1 5637 7054 -4 3 754 487 343 64 45 chr12 22189877 22190183 -99067347 - ORR1D-int LTR MaLR -1219 361 24 3 754 180 111 0 0 chr12 22190202 22190229 -99067301 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 754 229 272 56 46 chr12 22190267 22190375 -99067155 - MTD LTR MaLR -39 380 272 3 754 1803 165 68 23 chr12 22190438 22190512 -99067018 + RLTR9D LTR ERVK 1 74 -329 3 754 3253 51 2 5 chr12 22190512 22190909 -99066621 - MTA_Mm LTR MaLR 0 396 1 3 754 1803 165 68 23 chr12 22190909 22191218 -99066312 + RLTR9D LTR ERVK 75 401 -2 3 754 357 358 53 16 chr12 22191220 22191410 -99066120 - MTD LTR MaLR -208 211 15 3 754 228 217 0 0 chr12 22192239 22192285 -99065245 + L1_Mur3 LINE L1 1791 1836 -4044 3 754 4892 131 24 45 chr12 22192813 22193719 -99063811 + RMER17D LTR ERVK 1 887 -2 3 754 41324 18 0 6 chr12 22193850 22200022 -99057508 - L1Md_A LINE L1 0 6582 452 3 754 562 170 209 0 chr12 22200737 22200919 -99056611 - Lx9 LINE L1 0 7644 7425 3 754 965 98 20 20 chr12 22200990 22201136 -99056394 + B1_Mm SINE Alu 1 146 -1 3 754 180 143 0 0 chr12 22201147 22201189 -99056341 + (A)n Simple_repeat Simple_repeat 1 42 0 3 754 3341 74 48 2 chr12 22201382 22201843 -99055687 + RLTR45 LTR ERVK 1 482 0 3 754 2438 61 68 24 chr12 22201843 22202180 -99055350 + RLTR45-int LTR ERVK 1 352 -6892 3 754 6501 52 47 1 chr12 22202180 22202981 -99054549 + RLTR45-int LTR ERVK 581 1418 -5826 3 754 25424 52 30 21 chr12 22202975 22205806 -99051724 + RLTR45-int LTR ERVK 1859 4745 -2499 3 754 180 0 0 0 chr12 22205806 22205826 -99051704 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 754 25424 52 30 21 chr12 22205826 22206376 -99051154 + RLTR45-int LTR ERVK 4746 5269 -1975 3 754 6581 26 9 0 chr12 22206376 22207136 -99050394 + L1Md_T LINE L1 4820 5586 -297 3 754 8743 28 0 0 chr12 22207136 22208131 -99049399 + L1Md_T LINE L1 5587 6581 -1 3 754 16372 35 36 2 chr12 22208144 22210061 -99047469 + RLTR45-int LTR ERVK 5261 7244 0 3 754 3371 80 46 0 chr12 22210061 22210522 -99047008 + RLTR45 LTR ERVK 1 482 0 3 754 432 277 80 80 chr12 22210612 22210800 -99046730 + B3A SINE B2 3 190 -5 3 754 25 31 0 0 chr12 22212625 22212657 -99044873 + GC_rich Low_complexity Low_complexity 1 32 0 3 754 310 146 0 18 chr12 22214252 22214308 -99043222 + HAL1-3A_ME LINE L1 1976 2030 -828 3 754 813 158 0 0 chr12 22214308 22214485 -99043045 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 754 337 259 12 0 chr12 22214594 22214675 -99042855 - ID2 SINE ID 0 83 2 3 754 758 175 0 28 chr12 22214796 22214937 -99042593 + B1_Mm SINE Alu 5 141 -6 3 754 367 348 38 17 chr12 22214958 22215195 -99042335 + MER46C DNA MER2_type 96 337 -1 3 754 1398 216 105 13 chr12 22215421 22215801 -99041729 + MTD LTR MaLR 5 419 0 3 754 1161 63 0 7 chr12 22216209 22216353 -99041177 - B1_Mus2 SINE Alu 0 147 5 3 754 486 250 9 0 chr12 22216406 22216518 -99041012 + PB1D9 SINE Alu 2 114 -6 3 754 447 211 151 123 chr12 22217407 22217474 -99040056 - B3 SINE B2 -64 152 100 3 754 887 119 27 34 chr12 22217474 22217622 -99039908 - B1_Mus1 SINE Alu 0 148 2 3 754 447 211 151 123 chr12 22217622 22217700 -99039830 - B3 SINE B2 -117 99 3 3 754 294 267 0 0 chr12 22217716 22217817 -99039713 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 754 629 210 72 142 chr12 22217825 22217990 -99039540 - B3 SINE B2 -4 212 45 3 754 746 193 21 7 chr12 22218171 22218312 -99039218 - B1_Mur1 SINE Alu -6 143 1 3 754 841 313 117 15 chr12 22218579 22218991 -99038539 + MER63C DNA AcHobo 240 693 -237 3 754 302 265 24 0 chr12 22219062 22219145 -99038385 + MER63C DNA AcHobo 691 775 -155 3 754 513 167 37 0 chr12 22219336 22219444 -99038086 + Lx3B LINE L1 6862 6973 0 4 754 183 42 0 0 chr12 22219686 22219710 -99037820 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 4 754 1082 101 6 0 chr12 22219710 22219869 -99037661 - B2_Mm1a SINE B2 -33 160 1 4 754 245 194 153 0 chr12 22220364 22220436 -99037094 + MER5A1 DNA MER1_type 13 95 -71 4 754 435 267 51 126 chr12 22220665 22220879 -99036651 - ID_B1 SINE B4 -17 207 10 4 754 626 252 0 13 chr12 22221091 22221240 -99036290 + B1_Mm SINE Alu 1 147 0 4 754 318 217 0 0 chr12 22221694 22221754 -99035776 - B3 SINE B2 -87 129 70 4 754 391 86 0 0 chr12 22222006 22222064 -99035466 - RMER6D LTR ERVK -662 58 1 4 754 215 243 79 26 chr12 22222064 22222133 -99035397 - B4A SINE B4 -212 80 8 4 754 471 313 76 0 chr12 22222436 22222567 -99034963 + RSINE1 SINE B4 21 161 -4 4 754 2479 141 16 45 chr12 22223583 22224006 -99033524 + MTC LTR MaLR 5 415 -6 4 754 188 329 92 49 chr12 22224410 22224573 -99032957 + L2c LINE L2 2791 2960 -459 4 754 1457 84 0 5 chr12 22224635 22224827 -99032703 - B2_Mm2 SINE B2 -4 191 1 4 754 314 298 82 31 chr12 22224897 22224994 -99032536 - RSINE1 SINE B4 -13 152 51 4 754 958 170 0 0 chr12 22225082 22225229 -99032301 + B1_Mur1 SINE Alu 3 149 0 4 754 381 305 191 49 chr12 22225464 22225788 -99031742 + ORR1E LTR MaLR 1 370 0 4 754 201 360 44 11 chr12 22225796 22225886 -99031644 + L2c LINE L2 3256 3348 -39 4 754 738 32 0 0 chr12 22225926 22226019 -99031511 + (TG)n Simple_repeat Simple_repeat 1 93 0 4 754 301 214 28 28 chr12 22226234 22226306 -99031224 - ID4 SINE ID -10 73 2 4 754 31 26 0 0 chr12 22226867 22226905 -99030625 + AT_rich Low_complexity Low_complexity 1 38 0 4 754 1328 86 16 0 chr12 22227001 22227188 -99030342 - B2_Mm2 SINE B2 -5 190 1 4 754 1560 62 0 0 chr12 22227205 22227398 -99030132 - B2_Mm1a SINE B2 0 193 1 4 754 500 272 18 0 chr12 22227398 22227512 -99030018 - RSINE1 SINE B4 -47 118 3 4 754 568 216 10 10 chr12 22227719 22227822 -99029708 - B1_Mur2 SINE Alu -40 109 7 4 754 426 243 144 72 chr12 22227830 22228025 -99029505 - B3 SINE B2 0 216 8 4 754 554 260 85 33 chr12 22228684 22228895 -99028635 + ID_B1 SINE B4 3 224 0 4 754 1646 244 56 3 chr12 22229939 22230330 -99027200 - MTD LTR MaLR -3 416 5 4 754 267 345 35 0 chr12 22230333 22230449 -99027081 + RMER15 LTR ERVL 440 559 -16 4 754 1433 274 14 32 chr12 22230629 22230964 -99026566 - ORR1D2 LTR MaLR -8 362 34 4 754 1097 131 91 14 chr12 22230964 22231174 -99026356 + URR1A DNA MER1_type 1 226 0 4 754 1433 274 14 32 chr12 22231174 22231207 -99026323 - ORR1D2 LTR MaLR -337 33 1 4 754 260 294 0 61 chr12 22233428 22233526 -99024004 - MLT1K LTR MaLR 0 595 504 4 754 190 192 56 37 chr12 22234373 22234427 -99023103 + MIRc SINE MIR 79 133 -135 4 754 1022 237 0 0 chr12 22234588 22234799 -99022731 + B3 SINE B2 2 212 -4 4 754 674 176 205 90 chr12 22234839 22235039 -99022491 - URR1B DNA MER1_type -1 224 2 4 754 393 267 86 8 chr12 22235331 22235448 -99022082 + HAL1-2a_MD LINE L1 2354 2479 -545 4 754 1254 141 98 22 chr12 22235483 22235708 -99021822 + MTC LTR MaLR 1 242 -179 4 754 472 62 0 15 chr12 22235727 22235792 -99021738 - B2_Mm2 SINE B2 -129 66 3 4 754 1432 64 21 0 chr12 22235798 22235986 -99021544 - B2_Mm1t SINE B2 0 193 2 4 754 927 150 0 25 chr12 22235986 22236143 -99021387 + MTC LTR MaLR 236 388 -33 4 754 248 288 52 35 chr12 22236689 22236804 -99020726 + L2c LINE L2 3218 3334 -53 4 754 1335 197 165 6 chr12 22237155 22237477 -99020053 + ORR1D1 LTR MaLR 1 373 -1 4 754 366 279 84 42 chr12 22237504 22237646 -99019884 + B1F SINE Alu 2 149 0 4 754 419 230 11 11 chr12 22237849 22237937 -99019593 + PB1D10 SINE Alu 17 104 -13 4 754 234 356 14 0 chr12 22237974 22238047 -99019483 + ID SINE ID 9 82 -142 4 754 625 131 18 27 chr12 22238404 22238514 -99019016 - URR1B DNA MER1_type -15 210 102 4 754 214 50 50 0 chr12 22238537 22238577 -99018953 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 4 754 1041 110 7 0 chr12 22238590 22238736 -99018794 - B1_Mm SINE Alu 0 147 1 4 754 324 129 15 88 chr12 22238736 22238798 -99018732 - URR1B DNA MER1_type -110 115 59 4 754 258 239 0 0 chr12 22238884 22238976 -99018554 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 4 754 853 239 14 29 chr12 22239263 22239470 -99018060 + B3 SINE B2 2 205 -11 4 754 1700 184 115 6 chr12 22239992 22240348 -99017182 - MTD LTR MaLR 0 419 25 4 754 1321 206 141 12 chr12 22240361 22240695 -99016835 - MTD-int LTR MaLR -6 1252 876 4 754 1859 225 24 62 chr12 22240678 22241147 -99016383 - MTD-int LTR MaLR -716 542 92 4 754 1087 217 237 3 chr12 22241203 22241541 -99015989 + MTD LTR MaLR 3 419 0 4 754 445 240 52 52 chr12 22241549 22241703 -99015827 + MTD-int LTR MaLR 3 156 -1102 4 754 473 276 65 19 chr12 22241848 22242003 -99015527 + RSINE1 SINE B4 3 164 -1 4 754 878 151 7 0 chr12 22242126 22242272 -99015258 - B1_Mus1 SINE Alu -1 147 1 4 754 582 244 0 32 chr12 22242330 22242453 -99015077 + PB1D9 SINE Alu 2 120 0 4 754 287 267 188 62 chr12 22242453 22242474 -99015056 + B4A SINE B4 87 248 -44 4 754 301 258 45 0 chr12 22242474 22242540 -99014990 + ID4_ SINE ID 9 77 -6 4 754 492 48 0 0 chr12 22242588 22242651 -99014879 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 754 520 263 119 15 chr12 22243072 22243273 -99014257 - B4A SINE B4 -68 224 3 4 754 337 252 53 154 chr12 22243286 22243399 -99014131 + MLT1B LTR MaLR 160 256 -134 4 754 2675 100 23 5 chr12 22243399 22243792 -99013738 - MTB LTR MaLR 0 400 1 4 754 337 273 60 127 chr12 22243792 22243926 -99013604 + MLT1B LTR MaLR 257 457 -10 4 754 390 243 203 27 chr12 22244006 22244068 -99013462 - ID_B1 SINE B4 0 224 150 4 754 938 155 0 0 chr12 22244068 22244210 -99013320 + B1_Mus1 SINE Alu 1 142 -6 4 754 390 243 203 27 chr12 22244210 22244295 -99013235 - ID_B1 SINE B4 -75 149 51 4 754 936 285 14 0 chr12 22244447 22244654 -99012876 + MTEa LTR MaLR 18 227 -152 4 754 181 125 200 0 chr12 22244866 22244906 -99012624 + L3 LINE CR1 916 963 -3526 4 754 204 304 54 0 chr12 22245132 22245188 -99012342 + MIRm SINE MIR 97 155 -121 4 754 195 301 95 26 chr12 22245277 22245393 -99012137 - MER5A DNA MER1_type -4 185 62 4 754 338 291 71 36 chr12 22245582 22245778 -99011752 - MLT1N2 LTR MaLR -5 557 355 4 754 377 240 121 60 chr12 22246263 22246445 -99011085 + RMER10A LTR ERVL 65 257 -185 4 754 612 0 0 0 chr12 22246454 22246522 -99011008 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 754 284 236 147 66 chr12 22246522 22246658 -99010872 + RMER10A LTR ERVL 296 442 0 4 754 484 262 119 14 chr12 22246798 22246941 -99010589 - RSINE1 SINE B4 -2 163 6 4 754 1702 225 33 73 chr12 22247568 22247763 -99009767 + MTD LTR MaLR 1 191 -228 4 754 837 262 28 9 chr12 22247763 22247975 -99009555 + B3 SINE B2 1 216 0 4 754 1702 226 32 75 chr12 22247975 22248215 -99009315 + MTD LTR MaLR 192 405 -14 4 754 870 129 0 67 chr12 22248581 22248730 -99008800 + B1_Mus1 SINE Alu 10 148 0 4 754 615 243 78 83 chr12 22248823 22249016 -99008514 + B3 SINE B2 2 193 -23 4 754 810 241 15 35 chr12 22249058 22249087 -99008443 - B3A SINE B2 0 198 172 4 754 198 0 0 0 chr12 22249087 22249109 -99008421 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 754 198 0 0 0 chr12 22249111 22249133 -99008397 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 754 810 241 15 35 chr12 22249133 22249302 -99008228 - B3A SINE B2 -27 171 1 4 754 418 269 82 0 chr12 22249319 22249453 -99008077 + L1MD2 LINE L1 5422 5566 -676 4 754 1443 182 166 138 chr12 22249454 22249914 -99007616 + MT2A LTR ERVL 1 462 -71 4 754 4252 142 44 25 chr12 22250009 22250469 -99007061 - RMER17D2 LTR ERVK -4 805 352 4 754 1064 8 0 8 chr12 22250469 22250595 -99006935 + (GGAGA)n Simple_repeat Simple_repeat 2 126 0 4 754 4252 142 44 25 chr12 22250595 22250924 -99006606 - RMER17D2 LTR ERVK -458 351 2 4 754 385 248 200 0 chr12 22250931 22251036 -99006494 + RSINE1 SINE B4 4 129 -36 4 754 530 311 191 8 chr12 22251093 22251349 -99006181 + L1MD2 LINE L1 5597 5899 -460 4 754 585 42 0 0 chr12 22251351 22251423 -99006107 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 754 930 79 79 0 chr12 22251495 22251621 -99005909 - B1_Mus1 SINE Alu -12 136 1 4 754 716 282 13 43 chr12 22251653 22251883 -99005647 - ID_B1 SINE B4 0 224 2 4 754 239 292 75 43 chr12 22252758 22252851 -99004679 + RMER21A LTR ERV1 259 354 -593 4 754 366 23 0 0 chr12 22254188 22254231 -99003299 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 754 462 18 0 0 chr12 22254231 22254286 -99003244 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 4 754 666 22 33 0 chr12 22254459 22254551 -99002979 + (TC)n Simple_repeat Simple_repeat 1 95 0 4 754 472 174 174 50 chr12 22254556 22254677 -99002853 - B1_Mur2 SINE Alu -13 136 1 4 754 795 228 83 0 chr12 22254702 22254895 -99002635 - B3 SINE B2 -5 211 3 4 754 304 309 81 101 chr12 22255121 22255330 -99002200 - MLT1F2 LTR MaLR -226 334 130 4 754 753 12 0 0 chr12 22255367 22255453 -99002077 + (TTTA)n Simple_repeat Simple_repeat 2 87 0 4 754 667 194 39 0 chr12 22255453 22255582 -99001948 - B1_Mus1 SINE Alu -12 136 3 4 754 517 122 0 42 chr12 22255920 22256040 -99001490 + C-rich Low_complexity Low_complexity 2 116 0 4 754 4118 60 82 0 chr12 22256273 22256794 -99000736 + LTRIS2 LTR ERV1 1 564 0 4 754 300 262 6 58 chr12 22257053 22257146 -99000384 - PB1D10 SINE Alu -15 134 40 4 754 315 155 183 0 chr12 22257228 22257299 -99000231 + B2_Mm2 SINE B2 3 86 -109 4 754 429 36 0 0 chr12 22257313 22257368 -99000162 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 754 531 0 0 0 chr12 22257368 22257426 -99000104 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 754 2570 118 12 10 chr12 22257503 22257905 -98999625 + RLTR9E LTR ERVK 1 403 -6 4 754 22 35 0 0 chr12 22258602 22258631 -98998899 + AT_rich Low_complexity Low_complexity 1 29 0 4 754 933 34 0 0 chr12 22259272 22259389 -98998141 + (TC)n Simple_repeat Simple_repeat 1 117 0 5 754 343 286 55 0 chr12 22259425 22259516 -98998014 - RSINE1 SINE B4 -28 137 42 5 754 812 252 96 78 chr12 22259626 22259952 -98997578 - MTE2a LTR MaLR -4 375 44 5 754 1307 176 0 5 chr12 22259952 22260175 -98997355 - URR1B DNA MER1_type -3 222 1 5 754 925 159 14 0 chr12 22260206 22260351 -98997179 + B1_Mus1 SINE Alu 1 147 -1 5 754 788 222 99 11 chr12 22260380 22260571 -98996959 + B3 SINE B2 3 210 -6 5 754 189 94 0 0 chr12 22260581 22260613 -98996917 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 5 754 258 188 104 0 chr12 22260616 22260664 -98996866 - MTE2a LTR MaLR -326 53 1 5 754 2046 161 10 161 chr12 22261762 22261874 -98995656 + MTC LTR MaLR 1 114 -307 5 754 556 14 14 14 chr12 22261874 22261948 -98995582 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 754 2046 161 10 161 chr12 22261948 22262013 -98995517 + MTC LTR MaLR 115 115 -306 5 754 634 201 63 21 chr12 22262013 22262155 -98995375 - B1_Mur3 SINE Alu 0 149 2 5 754 2046 161 10 161 chr12 22262155 22262472 -98995058 + MTC LTR MaLR 115 421 0 5 754 252 312 79 18 chr12 22262474 22262588 -98994942 - MIRb SINE MIR -125 143 23 5 754 710 232 0 0 chr12 22263420 22263545 -98993985 - RSINE1 SINE B4 -38 127 3 5 754 670 259 60 30 chr12 22263773 22263972 -98993558 - B4A SINE B4 -86 206 2 5 754 211 202 146 37 chr12 22263975 22264057 -98993473 + MIR SINE MIR 90 180 -82 5 754 1245 153 51 9 chr12 22264783 22265000 -98992530 - URR1A DNA MER1_type 0 226 1 5 754 10558 77 1 1 chr12 22266437 22267824 -98989706 + L1Md_F2 LINE L1 4199 5585 -298 5 754 7983 55 2 5 chr12 22267825 22268817 -98988713 + L1Md_F2 LINE L1 5587 6575 -7 5 754 714 201 30 25 chr12 22268831 22268989 -98988541 + ID_B1 SINE B4 86 247 -45 5 754 634 187 47 31 chr12 22268991 22269118 -98988412 + B1_Mur3 SINE Alu 9 137 -12 5 754 299 161 21 0 chr12 22269126 22269219 -98988311 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 5 754 603 218 60 0 chr12 22269425 22269558 -98987972 - ID_B1 SINE B4 -2 222 82 5 754 215 31 0 30 chr12 22269573 22269606 -98987924 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 754 856 92 0 0 chr12 22269606 22269725 -98987805 - B1_Mm SINE Alu -7 140 22 5 754 691 250 39 28 chr12 22269800 22269981 -98987549 - B3 SINE B2 0 216 34 5 754 230 273 67 76 chr12 22270142 22270261 -98987269 + MT2B LTR ERVL 135 252 -349 5 754 323 258 41 10 chr12 22270178 22270276 -98987254 + PB1D7 SINE Alu 13 113 -7 5 754 270 91 23 0 chr12 22271012 22271056 -98986474 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 5 754 903 123 25 0 chr12 22271056 22271218 -98986312 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 5 754 300 70 0 0 chr12 22272215 22272258 -98985272 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 754 18059 100 29 29 chr12 22273697 22274718 -98982812 + ETnERV3-int LTR ERVK 2982 3975 -1833 5 754 342 0 0 0 chr12 22274718 22274756 -98982774 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 5 754 18059 100 29 29 chr12 22274756 22276528 -98981002 + ETnERV3-int LTR ERVK 3976 5775 -33 5 754 6516 74 23 34 chr12 22276546 22276776 -98980754 + RLTR13B3 LTR ERVK 1 232 -697 5 754 8030 55 1 2 chr12 22276776 22277761 -98979769 + L1Md_F2 LINE L1 5587 6570 -12 5 754 5470 62 9 35 chr12 22277761 22278469 -98979061 + RLTR13B3 LTR ERVK 233 929 0 5 754 1813 100 59 74 chr12 22279233 22279557 -98977973 - ORR1A2 LTR MaLR -8 319 1 5 754 291 254 0 0 chr12 22279557 22279624 -98977906 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 754 935 146 0 0 chr12 22279704 22279841 -98977689 - B1_Mur4 SINE Alu -13 137 1 5 754 247 309 151 23 chr12 22279862 22280034 -98977496 - B3A SINE B2 -3 195 2 5 754 595 263 14 72 chr12 22280051 22280260 -98977270 - B4A SINE B4 -72 220 24 5 754 869 220 23 37 chr12 22281153 22281370 -98976160 - ID_B1 SINE B4 -8 216 3 5 754 932 167 0 0 chr12 22281418 22281568 -98975962 - B1_Mur4 SINE Alu 0 150 1 5 754 289 208 62 49 chr12 22281570 22281651 -98975879 - PB1D10 SINE Alu -14 103 22 5 755 238 224 12 12 chr12 22285105 22285191 -98972339 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 755 203 262 126 39 chr12 22285762 22285889 -98971641 - MIRb SINE MIR -66 202 65 5 755 653 251 31 0 chr12 22286345 22286508 -98971022 - B3A SINE B2 -30 168 1 5 755 2269 97 41 6 chr12 22286515 22286856 -98970674 - L1_Mus3 LINE L1 -6 6632 6280 5 755 1374 87 5 11 chr12 22286867 22287053 -98970477 - B2_Mm1t SINE B2 -7 186 2 5 755 395 208 262 23 chr12 22287064 22287332 -98970198 - L1MC1 LINE L1 0 6333 6002 5 755 577 167 28 17 chr12 22287811 22287988 -98969542 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 755 207 233 29 0 chr12 22288007 22288110 -98969420 + (TG)n Simple_repeat Simple_repeat 2 107 0 5 755 434 192 14 14 chr12 22288129 22288277 -98969253 + (TG)n Simple_repeat Simple_repeat 1 148 0 5 755 241 148 39 66 chr12 22288503 22288684 -98968846 + (TAA)n Simple_repeat Simple_repeat 2 177 0 5 755 584 311 40 98 chr12 22288696 22288813 -98968717 - RLTR11A2 LTR ERVK -85 442 348 5 755 1051 75 0 0 chr12 22288813 22288947 -98968583 - B1_Mm SINE Alu -13 134 1 5 755 584 311 40 98 chr12 22288947 22289157 -98968373 - RLTR11A2 LTR ERVK -180 347 134 5 755 283 167 9 29 chr12 22289329 22289434 -98968096 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 5 755 413 191 17 11 chr12 22289450 22289625 -98967905 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 5 755 559 229 55 7 chr12 22289691 22289836 -98967694 + Lx2B LINE L1 6632 6783 -217 5 755 28 29 0 0 chr12 22289875 22289910 -98967620 + AT_rich Low_complexity Low_complexity 1 35 0 5 755 240 35 0 0 chr12 22289935 22289964 -98967566 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 755 463 163 16 0 chr12 22290051 22290174 -98967356 + (TA)n Simple_repeat Simple_repeat 1 125 0 5 755 222 232 14 14 chr12 22290179 22290249 -98967281 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 5 755 567 229 71 10 chr12 22290291 22290462 -98967068 + Lx2B LINE L1 6623 6796 -212 5 755 208 200 49 12 chr12 22290474 22290555 -98966975 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 5 755 189 0 0 0 chr12 22290558 22290579 -98966951 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 5 755 1421 246 86 14 chr12 22290585 22291155 -98966375 + L1_Mur3 LINE L1 1472 2082 -3798 5 755 904 131 14 7 chr12 22291423 22291569 -98965961 - B1_Mus1 SINE Alu 0 148 2 5 755 316 256 0 0 chr12 22291866 22291944 -98965586 - ORR1C2 LTR MaLR -14 370 293 5 755 452 292 82 41 chr12 22292155 22292693 -98964837 - MurSatRep1 Unknown Unknown 0 2137 1747 5 755 420 286 7 7 chr12 22292647 22292870 -98964660 - MMSAT4 Satellite Satellite 0 223 1 5 755 449 273 14 14 chr12 22292937 22293238 -98964292 - MMSAT4 Satellite Satellite -6 301 1 5 755 521 322 34 33 chr12 22293178 22293729 -98963801 - MurSatRep1 Unknown Unknown -88 2049 1747 5 755 8308 187 102 35 chr12 22293770 22294756 -98962774 - MurSatRep1 Unknown Unknown -2 2135 1122 5 755 1285 92 6 0 chr12 22294756 22294929 -98962601 + B2_Mm1a SINE B2 2 175 -18 5 755 8308 187 102 35 chr12 22294929 22295792 -98961738 - MurSatRep1 Unknown Unknown -1016 1121 177 5 755 281 303 81 16 chr12 22295792 22295916 -98961614 + B1_Mur2 SINE Alu 1 132 -17 5 755 8308 187 102 35 chr12 22295916 22296065 -98961465 - MurSatRep1 Unknown Unknown -1961 176 3 5 755 276 332 81 52 chr12 22296157 22296367 -98961163 + B3 SINE B2 1 216 0 5 755 296 241 25 41 chr12 22296483 22296604 -98960926 + Lx4B LINE L1 6936 7054 -4 5 755 1293 334 31 42 chr12 22296707 22297417 -98960113 - ORR1C2-int LTR MaLR -107 1263 562 5 755 2194 232 11 6 chr12 22297432 22297957 -98959573 + Lx4B LINE L1 5641 6168 -890 5 755 3299 225 16 8 chr12 22297961 22298727 -98958803 + Lx4B LINE L1 6283 7054 -4 5 755 358 321 70 20 chr12 22298852 22299052 -98958478 - ORR1C2-int LTR MaLR -1107 263 54 5 755 230 354 68 23 chr12 22299132 22299265 -98958265 - MTD LTR MaLR -16 403 265 5 755 570 52 0 0 chr12 22299321 22299395 -98958135 + RLTR9D LTR ERVK 1 74 -329 5 755 2736 53 11 0 chr12 22299395 22299772 -98957758 - MTA_Mm LTR MaLR 0 396 16 5 755 404 276 51 51 chr12 22300999 22301236 -98956294 + L1_Mur3 LINE L1 870 1106 -6622 5 755 449 278 83 0 chr12 22301533 22301763 -98955767 + L1_Mur3 LINE L1 1314 1562 -4315 5 755 386 255 9 122 chr12 22301776 22301990 -98955540 + L1_Mur3 LINE L1 1647 1836 -4044 5 755 4949 107 77 30 chr12 22302546 22302893 -98954637 + RMER17D LTR ERVK 1 367 -522 5 755 968 25 0 8 chr12 22302893 22303013 -98954517 + (TCTCC)n Simple_repeat Simple_repeat 2 120 0 5 755 4949 107 77 30 chr12 22303013 22303512 -98954018 + RMER17D LTR ERVK 368 887 -2 5 755 254 310 55 85 chr12 22304098 22304334 -98953196 - MT2A LTR ERVL -231 302 74 5 755 225 159 45 60 chr12 22304373 22304440 -98953090 + (TTAGGG)n Simple_repeat Simple_repeat 5 70 0 5 755 250 262 121 16 chr12 22304508 22304632 -98952898 - Lx8 LINE L1 -2 7471 7335 5 755 296 210 12 0 chr12 22304640 22304721 -98952809 + CT-rich Low_complexity Low_complexity 3 84 0 5 755 286 305 103 13 chr12 22304763 22304919 -98952611 - Lx8 LINE L1 -326 7147 6978 5 755 763 251 27 27 chr12 22305234 22305422 -98952108 + ID_B1 SINE B4 4 191 -33 5 755 895 187 173 0 chr12 22305777 22306002 -98951528 - Lx9 LINE L1 0 7644 7381 5 755 1003 106 0 7 chr12 22306054 22306197 -98951333 + B1_Mm SINE Alu 1 142 -5 5 755 182 75 36 54 chr12 22306206 22306262 -98951268 + A-rich Low_complexity Low_complexity 6 60 0 5 755 451 280 142 6 chr12 22306533 22306702 -98950828 + B3A SINE B2 3 194 -4 5 755 194 229 22 67 chr12 22307122 22307211 -98950319 + MER5B DNA MER1_type 32 116 -62 5 755 237 347 31 0 chr12 22307285 22307383 -98950147 - MER5A1 DNA MER1_type 0 166 66 5 755 230 386 15 30 chr12 22307448 22307579 -98949951 + MER3 DNA MER1_type 3 131 -78 5 755 257 268 0 40 chr12 22308950 22309051 -98948479 + B4A SINE B4 1 97 -195 5 755 537 76 0 0 chr12 22309112 22309191 -98948339 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 755 3011 65 13 0 chr12 22310228 22310613 -98946917 - RLTR10 LTR ERVK 0 390 1 5 755 5544 37 5 2 chr12 22310613 22311256 -98946274 - RLTR10-int LTR ERVK -1 1986 1342 5 755 241 304 56 66 chr12 22311256 22311453 -98946077 - RLTR46 LTR ERVK 0 320 126 5 755 39155 186 17 5 chr12 22311582 22318906 -98938624 - IAPEY3-int LTR ERVK 0 7680 246 5 755 278 188 59 59 chr12 22318891 22318959 -98938571 - IAPLTR3-int LTR ERVK -6375 446 379 5 755 254 283 56 66 chr12 22319232 22319429 -98938101 - RLTR46 LTR ERVK 0 320 126 5 755 2156 43 0 4 chr12 22319555 22319809 -98937721 - RLTR10-int LTR ERVK -637 1350 1098 5 755 207 0 0 0 chr12 22319809 22319832 -98937698 + (T)n Simple_repeat Simple_repeat 1 23 0 5 755 1309 7 0 0 chr12 22319832 22319978 -98937552 - B1_Mm SINE Alu 0 147 2 5 755 932 81 0 0 chr12 22319979 22320102 -98937428 - RLTR10-int LTR ERVK -875 1112 990 5 755 628 300 35 32 chr12 22320184 22320576 -98936954 - MMERVK10C-int LTR ERVK -5987 1594 1309 6 755 4292 48 10 0 chr12 22320632 22321245 -98936285 - RLTR10-int LTR ERVK -995 992 301 6 755 700 60 68 0 chr12 22321246 22321363 -98936167 - RLTR10A LTR ERVK -2 409 285 6 755 198 167 0 0 chr12 22321363 22321399 -98936131 + T-rich Low_complexity Low_complexity 1 36 0 6 755 1706 113 39 4 chr12 22321479 22321737 -98935793 - MMERVK10C-int LTR ERVK -7314 267 1 6 755 2964 75 5 35 chr12 22321737 22322139 -98935391 - RLTR10 LTR ERVK 0 390 1 6 755 21 0 0 0 chr12 22324450 22324471 -98933059 + GC_rich Low_complexity Low_complexity 1 21 0 6 755 22 0 0 0 chr12 22325337 22325359 -98932171 + AT_rich Low_complexity Low_complexity 1 22 0 6 755 668 194 0 4 chr12 22326376 22326617 -98930913 + (CA)n Simple_repeat Simple_repeat 1 239 0 6 755 606 174 0 0 chr12 22326668 22326835 -98930695 + (CA)n Simple_repeat Simple_repeat 2 168 0 6 755 355 215 38 0 chr12 22326892 22326971 -98930559 - ID2 SINE ID 0 83 2 6 755 796 177 0 14 chr12 22327089 22327232 -98930298 + B1_Mur3 SINE Alu 2 142 -7 6 755 428 329 61 4 chr12 22327255 22327484 -98930046 + MER46C DNA MER2_type 96 337 -1 6 755 1392 219 106 8 chr12 22327711 22328089 -98929441 + MTD LTR MaLR 5 419 0 6 755 189 0 0 0 chr12 22328485 22328506 -98929024 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 6 755 1001 76 8 8 chr12 22328506 22328639 -98928891 - B1_Mus2 SINE Alu -13 134 2 6 755 497 216 18 18 chr12 22328689 22328802 -98928728 + PB1D9 SINE Alu 2 114 -6 6 755 388 301 48 14 chr12 22329689 22329755 -98927775 - B3 SINE B2 -64 152 83 6 755 717 81 191 24 chr12 22329755 22329881 -98927649 - B1_Mus1 SINE Alu 0 148 2 6 755 388 301 48 14 chr12 22329881 22329959 -98927571 - B3 SINE B2 -134 82 4 6 755 279 281 0 0 chr12 22329975 22330039 -98927491 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 755 622 226 66 0 chr12 22330061 22330198 -98927332 - B3 SINE B2 -15 201 56 6 755 743 186 21 7 chr12 22330395 22330536 -98926994 - B1_Mur1 SINE Alu -6 143 1 6 755 832 310 117 15 chr12 22330803 22331215 -98926315 + MER63C DNA AcHobo 240 693 -237 6 755 453 310 44 0 chr12 22331308 22331511 -98926019 + MER63C DNA AcHobo 714 925 -5 6 755 345 265 92 35 chr12 22331879 22332020 -98925510 + B1F SINE Alu 1 149 0 6 755 1298 73 6 0 chr12 22332659 22332838 -98924692 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 755 1097 97 0 0 chr12 22332841 22332986 -98924544 - B1_Mm SINE Alu 0 147 3 6 755 518 189 32 8 chr12 22333511 22333634 -98923896 + Lx3B LINE L1 6848 6973 0 6 755 432 0 0 0 chr12 22333876 22333924 -98923606 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 6 755 1130 113 6 0 chr12 22333924 22334083 -98923447 - B2_Mm1a SINE B2 -33 160 1 6 755 254 188 159 0 chr12 22334578 22334647 -98922883 + MER5A1 DNA MER1_type 13 92 -74 6 755 524 268 81 0 chr12 22335237 22335360 -98922170 - ETnERV2-int LTR ERVK -204 7202 7070 6 755 668 281 92 42 chr12 22335488 22335726 -98921804 + B4A SINE B4 5 254 -38 6 755 298 61 20 20 chr12 22335755 22335805 -98921725 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 755 188 245 38 0 chr12 22335962 22336015 -98921515 + MIRc SINE MIR 85 139 -129 6 755 1046 95 0 39 chr12 22336708 22336862 -98920668 + B1_Mus1 SINE Alu 1 148 0 6 755 2036 159 59 21 chr12 22337376 22337748 -98919782 + MTC LTR MaLR 3 388 -33 6 755 242 315 53 26 chr12 22338295 22338409 -98919121 + L2c LINE L2 3218 3334 -53 6 755 1222 201 170 16 chr12 22338762 22339085 -98918445 + ORR1D1 LTR MaLR 1 373 -1 6 755 468 262 20 46 chr12 22339112 22339264 -98918266 + B1F SINE Alu 2 149 0 6 755 180 0 0 0 chr12 22339264 22339284 -98918246 + (A)n Simple_repeat Simple_repeat 1 20 0 6 755 321 282 12 12 chr12 22339488 22339574 -98917956 + PB1D10 SINE Alu 19 104 -13 6 755 712 147 6 169 chr12 22340038 22340162 -98917368 - URR1A DNA MER1_type -15 211 113 6 755 1093 83 14 0 chr12 22340162 22340307 -98917223 - B1_Mm SINE Alu 0 147 1 6 755 712 174 39 127 chr12 22340307 22340385 -98917145 - URR1A DNA MER1_type -114 112 4 6 755 312 262 0 12 chr12 22340429 22340514 -98917016 + (TCCA)n Simple_repeat Simple_repeat 3 86 0 6 755 210 71 0 0 chr12 22340820 22340848 -98916682 + (T)n Simple_repeat Simple_repeat 1 28 0 6 755 817 213 18 0 chr12 22340848 22341012 -98916518 + B3 SINE B2 39 205 -11 6 755 446 157 48 0 chr12 22341543 22341626 -98915904 - MTD LTR MaLR 0 419 333 6 755 1122 109 86 0 chr12 22341635 22341652 -98915878 - B2_Mm1a SINE B2 -3 190 167 6 755 348 43 0 0 chr12 22341652 22341698 -98915832 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 6 755 1122 109 86 0 chr12 22341698 22341855 -98915675 - B2_Mm1a SINE B2 -27 166 2 6 755 1278 214 72 4 chr12 22341863 22342140 -98915390 - MTD LTR MaLR -99 320 25 6 755 4606 217 46 57 chr12 22342153 22343322 -98914208 - MTD-int LTR MaLR -6 1252 96 6 755 993 235 220 12 chr12 22343380 22343725 -98913805 + MTD LTR MaLR 3 419 0 6 755 499 228 45 51 chr12 22343731 22343888 -98913642 + MTD-int LTR MaLR 1 156 -1102 6 755 543 288 45 6 chr12 22344034 22344191 -98913339 + RSINE1 SINE B4 3 165 0 6 755 903 144 7 0 chr12 22344316 22344462 -98913068 - B1_Mus1 SINE Alu -1 147 1 6 755 722 178 0 17 chr12 22344481 22344601 -98912929 + B1_Mur1 SINE Alu 32 149 0 6 755 313 270 40 0 chr12 22344614 22344688 -98912842 + ID4_ SINE ID 1 77 -6 6 755 1184 79 0 11 chr12 22344736 22344915 -98912615 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 6 755 968 86 7 0 chr12 22344918 22345058 -98912472 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 6 755 2016 127 36 3 chr12 22345395 22345696 -98911834 - RLTR10E LTR ERVK 0 311 1 6 755 276 222 0 0 chr12 22345696 22345750 -98911780 + MLT1C LTR MaLR 52 105 -362 6 755 543 259 62 22 chr12 22345895 22346073 -98911457 - B4A SINE B4 -105 187 3 6 755 242 209 91 23 chr12 22346098 22346186 -98911344 + MLT1C LTR MaLR 160 253 -137 6 755 2311 100 9 6 chr12 22346211 22346536 -98910994 - MTB LTR MaLR 0 400 75 6 755 2167 209 127 49 chr12 22346536 22347361 -98910169 + RLTR13D6 LTR ERVK 1 893 0 6 755 403 127 68 40 chr12 22347361 22347435 -98910095 - MTA_Mm LTR MaLR -319 77 2 6 755 267 307 45 0 chr12 22347439 22347527 -98910003 + MLT1C LTR MaLR 333 424 -43 6 755 22 0 0 0 chr12 22347539 22347561 -98909969 + AT_rich Low_complexity Low_complexity 1 22 0 6 755 278 280 35 78 chr12 22347653 22347715 -98909815 - PB1D10 SINE Alu -2 115 52 6 755 1012 122 14 0 chr12 22347715 22347862 -98909668 + B1_Mur4 SINE Alu 1 149 -1 6 755 278 280 35 78 chr12 22347862 22347915 -98909615 - PB1D10 SINE Alu -66 51 5 6 755 263 238 111 0 chr12 22347879 22347942 -98909588 - ID_B1 SINE B4 -103 121 52 6 755 932 291 14 4 chr12 22348078 22348337 -98909193 + MTEa LTR MaLR 1 257 -122 6 755 206 273 55 0 chr12 22348779 22348834 -98908696 + MIRc SINE MIR 94 151 -117 6 755 329 267 70 56 chr12 22349208 22349351 -98908179 - MLT1N2 LTR MaLR -5 557 413 6 755 432 245 102 172 chr12 22349894 22350294 -98907236 + RMER10A LTR ERVL 71 442 0 6 755 503 265 146 7 chr12 22350445 22350582 -98906948 - RSINE1 SINE B4 -4 161 6 6 755 182 288 16 48 chr12 22351135 22351197 -98906333 + MIR SINE MIR 92 151 -57 6 755 856 182 44 26 chr12 22351219 22351414 -98906116 + MTD LTR MaLR 1 212 -209 6 755 784 194 18 120 chr12 22351414 22351595 -98905935 + B3 SINE B2 1 174 -42 6 755 504 0 0 0 chr12 22351595 22351651 -98905879 + (CATA)n Simple_repeat Simple_repeat 2 57 0 6 755 714 194 18 120 chr12 22351651 22351686 -98905844 + B2_Mm2 SINE B2 168 195 0 6 755 977 214 44 19 chr12 22351681 22351886 -98905644 + MTD LTR MaLR 196 405 -14 6 755 217 233 0 0 chr12 22352166 22352226 -98905304 + A-rich Low_complexity Low_complexity 1 60 0 6 755 800 182 18 111 chr12 22352262 22352425 -98905105 + B1_Mus1 SINE Alu 1 148 0 6 755 631 231 70 65 chr12 22352523 22352708 -98904822 + B3 SINE B2 8 193 -23 6 755 366 61 0 0 chr12 22352778 22352827 -98904703 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 755 723 183 8 0 chr12 22352862 22352993 -98904537 - B3A SINE B2 -64 134 3 6 755 517 248 28 14 chr12 22353012 22353155 -98904375 + L1MD LINE L1 5422 5566 -676 6 755 1396 168 182 142 chr12 22353156 22353600 -98903930 + MT2A LTR ERVL 1 462 -71 6 755 239 281 34 68 chr12 22353521 22353609 -98903921 + RMER21A LTR ERV1 576 660 -287 6 755 4065 152 56 10 chr12 22353700 22353861 -98903669 - RMER17D2 LTR ERVK 0 809 643 6 755 240 35 0 0 chr12 22353861 22353890 -98903640 + (TGG)n Simple_repeat Simple_repeat 2 30 0 6 755 4065 152 56 10 chr12 22353890 22354172 -98903358 - RMER17D2 LTR ERVK -167 642 347 6 755 640 0 0 24 chr12 22354172 22354254 -98903276 + (GGAGA)n Simple_repeat Simple_repeat 2 81 0 6 755 4065 152 56 10 chr12 22354254 22354583 -98902947 - RMER17D2 LTR ERVK -463 346 2 6 755 395 283 177 0 chr12 22354590 22354703 -98902827 + RSINE1 SINE B4 4 136 -29 6 755 484 360 40 5 chr12 22354753 22355000 -98902530 + L1MD LINE L1 5597 5848 -2147 6 755 570 15 0 0 chr12 22355024 22355091 -98902439 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 755 875 158 0 0 chr12 22355188 22355321 -98902209 - B1_Mus1 SINE Alu -15 133 1 6 755 743 274 13 44 chr12 22355353 22355582 -98901948 - ID_B1 SINE B4 0 224 3 6 755 252 0 0 0 chr12 22357538 22357566 -98899964 + (T)n Simple_repeat Simple_repeat 1 28 0 6 755 38646 29 1 0 chr12 22357578 22364029 -98893501 - L1Md_T LINE L1 0 6585 35 6 755 267 93 0 0 chr12 22364383 22364426 -98893104 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 755 222 37 0 0 chr12 22364438 22364465 -98893065 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 755 266 85 50 17 chr12 22364626 22364686 -98892844 + CT-rich Low_complexity Low_complexity 1 62 0 6 755 464 197 157 33 chr12 22364691 22364812 -98892718 - B1_Mur2 SINE Alu -13 136 1 6 755 581 268 47 8 chr12 22364867 22364995 -98892535 + ETnERV2-int LTR ERVK 7070 7202 -204 6 755 655 246 96 0 chr12 22365388 22365555 -98891975 - B3 SINE B2 -31 185 3 6 755 276 248 77 53 chr12 22365846 22365977 -98891553 - MLT1F2 LTR MaLR -292 277 129 6 755 422 65 0 16 chr12 22366028 22366091 -98891439 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 6 755 755 186 36 0 chr12 22366093 22366233 -98891297 - B1_Mus1 SINE Alu -1 147 3 6 755 871 134 0 27 chr12 22366579 22366763 -98890767 + C-rich Low_complexity Low_complexity 2 180 0 6 755 875 194 85 0 chr12 22367629 22367830 -98889700 - URR1A DNA MER1_type -6 220 3 6 755 901 268 11 29 chr12 22367830 22368101 -98889429 + MTE2b LTR MaLR 47 367 -12 7 755 281 176 0 19 chr12 22368594 22368646 -98888884 + MT2A LTR ERVL 9 59 -474 7 755 3793 89 2 20 chr12 22369726 22370264 -98887266 - L1Md_F2 LINE L1 0 6582 6055 7 755 3848 53 0 2 chr12 22370265 22370806 -98886724 + L1Md_F2 LINE L1 5516 6055 -527 7 755 969 133 178 16 chr12 22370856 22371047 -98886483 + URR1B DNA MER1_type 4 225 0 7 755 702 299 43 32 chr12 22371339 22371619 -98885911 - B4A SINE B4 -8 284 2 7 755 318 26 0 0 chr12 22371797 22371836 -98885694 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 755 364 302 8 41 chr12 22372824 22372945 -98884585 + MIRb SINE MIR 2 118 -150 7 755 333 294 28 0 chr12 22372953 22373062 -98884468 - PB1D7 SINE Alu -6 114 3 7 755 238 314 87 51 chr12 22373248 22373443 -98884087 - L2c LINE L2 -223 3164 2963 7 755 773 236 33 23 chr12 22373446 22373658 -98883872 + B3A SINE B2 3 215 -1 7 755 658 213 17 43 chr12 22374177 22374366 -98883164 - B3 SINE B2 0 195 17 7 755 485 276 22 22 chr12 22374399 22374536 -98882994 - B1F1 SINE Alu 0 149 13 7 755 464 210 12 0 chr12 22374520 22374601 -98882929 - RSINE1 SINE B4 -31 134 53 7 755 355 279 0 0 chr12 22374606 22374692 -98882838 - PB1D10 SINE Alu 0 117 32 7 755 630 95 0 0 chr12 22374767 22374851 -98882679 + B2_Mm2 SINE B2 3 86 -109 7 755 1620 49 0 0 chr12 22374851 22375368 -98882162 + (GA)n Simple_repeat Simple_repeat 1 517 0 7 755 876 44 0 0 chr12 22376813 22376926 -98880604 + (TC)n Simple_repeat Simple_repeat 1 113 0 7 755 270 327 42 83 chr12 22376940 22377060 -98880470 - RSINE1 SINE B4 -19 146 32 7 755 797 203 140 60 chr12 22377155 22377474 -98880056 - MTE2a LTR MaLR -14 365 35 7 755 1347 171 0 5 chr12 22377477 22377700 -98879830 - URR1B DNA MER1_type -3 222 1 7 755 858 179 14 0 chr12 22377731 22377876 -98879654 + B1_Mus1 SINE Alu 1 147 -1 7 755 715 266 36 55 chr12 22377901 22378120 -98879410 + B3 SINE B2 2 216 0 7 755 240 146 24 0 chr12 22378130 22378171 -98879359 - MTE2a LTR MaLR -327 52 11 7 755 2362 152 11 92 chr12 22379282 22379397 -98878133 + MTC LTR MaLR 1 113 -308 7 755 966 95 0 0 chr12 22379397 22379545 -98877985 + (TC)n Simple_repeat Simple_repeat 1 148 0 7 755 2362 152 11 92 chr12 22379545 22379569 -98877961 + MTC LTR MaLR 114 114 -307 7 755 639 201 63 21 chr12 22379569 22379711 -98877819 - B1_Mur3 SINE Alu 0 149 2 7 755 2362 152 11 92 chr12 22379711 22380028 -98877502 + MTC LTR MaLR 114 421 0 7 755 188 312 80 27 chr12 22380033 22380145 -98877385 - MIRb SINE MIR -128 140 23 7 755 226 200 0 52 chr12 22380260 22380318 -98877212 + C-rich Low_complexity Low_complexity 5 59 0 7 755 666 248 0 0 chr12 22380975 22381100 -98876430 - RSINE1 SINE B4 -38 127 3 7 755 738 246 50 25 chr12 22381328 22381528 -98876002 - B4A SINE B4 -86 206 2 7 755 252 0 0 0 chr12 22381581 22381609 -98875921 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 755 1323 156 9 18 chr12 22382352 22382580 -98874950 - URR1A DNA MER1_type 0 226 1 7 755 684 208 15 0 chr12 22384064 22384194 -98873336 + ID_B1 SINE B4 88 219 -5 7 755 581 226 39 46 chr12 22384218 22384348 -98873182 + B1_Mur3 SINE Alu 4 132 -17 7 755 282 29 0 0 chr12 22384363 22384398 -98873132 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 755 565 192 69 8 chr12 22384624 22384755 -98872775 - ID_B1 SINE B4 -2 222 84 7 755 301 133 31 77 chr12 22384769 22384834 -98872696 + 4.5SRNA scRNA scRNA 25 86 -8 7 755 782 61 0 0 chr12 22384785 22384883 -98872647 + B1_Mus2 SINE Alu 41 138 -9 7 755 755 236 39 28 chr12 22384971 22385150 -98872380 - B3 SINE B2 -2 214 34 7 755 246 257 26 26 chr12 22385337 22385413 -98872117 + MT2B LTR ERVL 165 240 -361 7 755 325 242 69 20 chr12 22385347 22385448 -98872082 + PB1D7 SINE Alu 13 118 -2 7 755 687 147 0 0 chr12 22385590 22385706 -98871824 + (GGGA)n Simple_repeat Simple_repeat 4 119 0 7 755 3157 252 71 27 chr12 22386639 22388142 -98869388 + ETnERV2-int LTR ERVK 2215 4554 -2852 7 755 3202 35 50 0 chr12 22388142 22388519 -98869011 - MTA_Mm LTR MaLR 0 396 1 7 755 3919 44 4 2 chr12 22388519 22389040 -98868490 - MTA_Mm-int LTR MaLR 0 1098 577 7 755 8803 59 36 49 chr12 22389040 22390261 -98867269 + ETnERV2-int LTR ERVK 5225 6429 -977 7 755 445 132 0 26 chr12 22390458 22390536 -98866994 + ETnERV2-int LTR ERVK 7331 7406 0 7 755 2411 146 5 12 chr12 22390536 22390946 -98866584 + RLTR9E LTR ERVK 1 407 -2 7 755 714 165 16 0 chr12 22391261 22391388 -98866142 + B1_Mus2 SINE Alu 18 146 -1 7 755 732 228 105 11 chr12 22391413 22391604 -98865926 + B3 SINE B2 2 210 -6 7 755 236 188 104 0 chr12 22391634 22391682 -98865848 - MTEb LTR MaLR -326 53 1 7 755 333 82 0 0 chr12 22392569 22392618 -98864912 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 755 1970 122 0 70 chr12 22395059 22395402 -98862128 - ORR1A2 LTR MaLR -8 319 1 7 755 277 269 0 0 chr12 22395402 22395469 -98862061 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 755 1451 222 80 8 chr12 22395558 22395931 -98861599 + MTD LTR MaLR 20 419 0 7 755 1087 89 0 20 chr12 22396349 22396498 -98861032 - B1_Mus2 SINE Alu 0 147 2 7 755 469 252 18 0 chr12 22396548 22396659 -98860871 + PB1D9 SINE Alu 2 114 -6 7 755 303 222 16 0 chr12 22397549 22397612 -98859918 - B3 SINE B2 -64 152 89 7 755 832 116 0 120 chr12 22397654 22397821 -98859709 - B1_Mus1 SINE Alu 0 148 2 7 755 508 216 0 30 chr12 22397821 22397921 -98859609 - B3 SINE B2 -117 99 3 7 755 324 262 0 0 chr12 22397937 22398040 -98859490 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 755 586 239 75 16 chr12 22398061 22398253 -98859277 - B3 SINE B2 -15 201 10 7 755 791 171 21 7 chr12 22398393 22398534 -98858996 - B1_Mur1 SINE Alu -6 143 1 7 755 749 339 65 67 chr12 22398800 22399487 -98858043 + MER63C DNA AcHobo 240 925 -5 7 755 426 221 92 35 chr12 22399857 22399998 -98857532 + B1F SINE Alu 1 149 0 7 755 487 185 37 0 chr12 22401141 22401249 -98856281 + Lx3B LINE L1 6862 6973 0 7 755 612 0 0 0 chr12 22401490 22401558 -98855972 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 7 755 1023 119 6 0 chr12 22401558 22401717 -98855813 - B2_Mm1a SINE B2 -33 160 1 7 755 1181 233 88 105 chr12 22401884 22401927 -98855603 - MTD LTR MaLR -3 416 375 7 755 695 190 34 47 chr12 22401927 22402076 -98855454 + B1_Mus1 SINE Alu 1 147 -1 7 755 1181 233 88 105 chr12 22402076 22402133 -98855397 - MTD LTR MaLR -45 374 355 7 755 1620 0 0 0 chr12 22402133 22402344 -98855186 + (GGGAA)n Simple_repeat Simple_repeat 1 211 0 7 755 1181 233 88 105 chr12 22402344 22402649 -98854881 - MTD LTR MaLR -65 354 17 7 755 474 49 0 0 chr12 22402791 22402852 -98854678 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 7 755 574 265 0 13 chr12 22403046 22403195 -98854335 + B1_Mm SINE Alu 1 147 0 7 755 356 183 0 0 chr12 22403637 22403697 -98853833 - B3 SINE B2 -87 129 70 7 755 385 102 0 0 chr12 22403948 22404007 -98853523 - RMER6D LTR ERVK -661 59 1 7 755 4449 22 0 0 chr12 22404064 22404557 -98852973 - MT2_Mm LTR ERVL 0 493 1 7 755 291 0 0 0 chr12 22404557 22404591 -98852939 - MERVL-int LTR ERVL -4 5481 5448 7 755 362 167 46 35 chr12 22404591 22404678 -98852852 - ORR1A3-int LTR MaLR -1323 640 553 7 755 47643 21 8 0 chr12 22404678 22409994 -98847536 - MERVL-int LTR ERVL -125 5360 1 7 755 4489 18 0 0 chr12 22409994 22410487 -98847043 - MT2_Mm LTR ERVL 0 493 1 7 755 446 311 68 8 chr12 22410808 22410941 -98846589 + RSINE1 SINE B4 21 161 -4 7 756 16098 239 18 11 chr12 22461155 22464619 -98792911 + MMERGLN-int LTR ERV1 374 3858 -3698 7 756 1996 191 25 42 chr12 22464668 22465117 -98792413 + RLTR1D LTR ERV1 165 605 0 7 756 210 174 0 21 chr12 22466376 22466423 -98791107 + CT-rich Low_complexity Low_complexity 3 48 0 7 756 1090 189 28 5 chr12 22466629 22466847 -98790683 + URR1B DNA MER1_type 2 224 -1 7 756 25 0 0 0 chr12 22467512 22467537 -98789993 + AT_rich Low_complexity Low_complexity 1 25 0 7 756 540 276 32 13 chr12 22467542 22467700 -98789830 + RSINE1 SINE B4 1 161 -4 7 756 432 37 0 0 chr12 22468399 22468453 -98789077 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 756 2327 87 0 80 chr12 22468465 22468816 -98788714 - ORR1A2 LTR MaLR -4 323 1 7 756 237 217 0 0 chr12 22468816 22468862 -98788668 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 756 789 159 0 0 chr12 22468948 22469080 -98788450 - B1_Mur4 SINE Alu -13 137 6 7 756 495 0 0 0 chr12 22469990 22470045 -98787485 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 756 207 0 0 0 chr12 22470045 22470067 -98787463 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 756 199 279 109 20 chr12 22470642 22470771 -98786759 - MIR SINE MIR -66 202 65 7 756 605 294 25 0 chr12 22471226 22471389 -98786141 - B3A SINE B2 -30 168 2 7 756 2038 114 60 9 chr12 22471400 22471735 -98785795 - L1_Mus3 LINE L1 -8 6630 6279 7 756 458 238 252 4 chr12 22471745 22472011 -98785519 - L1MC1 LINE L1 0 6333 6002 7 756 251 248 44 44 chr12 22472370 22472484 -98785046 + L1M1 LINE L1 5786 5899 -401 7 756 426 202 23 23 chr12 22472488 22472800 -98784730 + (TG)n Simple_repeat Simple_repeat 1 311 0 7 756 713 134 20 7 chr12 22472812 22472962 -98784568 + (TG)n Simple_repeat Simple_repeat 1 152 0 7 756 266 97 51 70 chr12 22473211 22473367 -98784163 + (TAA)n Simple_repeat Simple_repeat 2 154 0 7 756 24 53 0 0 chr12 22473370 22473408 -98784122 + AT_rich Low_complexity Low_complexity 1 38 0 7 756 456 306 41 92 chr12 22473422 22473528 -98784002 - RLTR11A2 LTR ERVK -96 432 334 7 756 1148 82 0 0 chr12 22473528 22473675 -98783855 - B1_Mm SINE Alu 0 147 1 7 756 560 284 43 24 chr12 22473675 22473885 -98783645 - RLTR11A2 LTR ERVK -181 346 132 7 756 1685 126 94 52 chr12 22474060 22474369 -98783161 - RLTRETN_Mm LTR ERVK 0 322 1 7 756 9127 118 8 19 chr12 22474369 22475772 -98781758 - MMETn-int LTR ERVK 0 4844 3457 7 756 14242 66 11 34 chr12 22475786 22477749 -98779781 - MMETn-int LTR ERVK -2925 1919 2 7 756 1963 119 12 51 chr12 22477750 22478085 -98779445 - RLTRETN_Mm LTR ERVK 0 322 1 7 756 412 202 0 20 chr12 22478120 22478376 -98779154 + (TA)n Simple_repeat Simple_repeat 1 250 0 7 756 578 219 59 12 chr12 22478418 22478591 -98778939 + Lx2B LINE L1 6623 6796 -212 7 756 22 35 0 0 chr12 22478602 22478631 -98778899 + AT_rich Low_complexity Low_complexity 1 29 0 7 756 543 69 0 0 chr12 22478653 22478725 -98778805 + (TA)n Simple_repeat Simple_repeat 2 73 0 7 756 189 0 0 0 chr12 22478725 22478745 -98778785 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 756 490 247 47 29 chr12 22479310 22479481 -98778049 + L1_Mur3 LINE L1 1048 1221 -6507 8 756 2092 250 71 8 chr12 22479466 22480397 -98777133 + L1_Mur3 LINE L1 1087 2082 -3798 8 756 828 160 21 0 chr12 22480669 22480813 -98776717 - B1_Mus1 SINE Alu 0 148 2 8 756 277 282 0 0 chr12 22481102 22481180 -98776350 - ORR1C2 LTR MaLR -14 370 293 8 756 342 301 8 8 chr12 22481434 22481568 -98775962 - MMSAT4 Satellite Satellite 0 168 35 8 756 3037 94 0 0 chr12 22481587 22481992 -98775538 - L1_Mus1 LINE L1 0 6567 6163 8 756 464 267 21 19 chr12 22482042 22482848 -98774682 - MMSAT4 Satellite Satellite 0 808 1 8 756 502 320 30 30 chr12 22482788 22483088 -98774442 - MurSatRep1 Unknown Unknown -88 2049 1750 8 756 7977 192 39 34 chr12 22483129 22484126 -98773404 - MurSatRep1 Unknown Unknown -2 2135 1126 8 756 1150 144 6 0 chr12 22484126 22484307 -98773223 + B2_Mm1a SINE B2 2 183 -10 8 756 7977 192 39 34 chr12 22484307 22485151 -98772379 - MurSatRep1 Unknown Unknown -1012 1125 284 8 756 371 288 56 35 chr12 22485151 22485295 -98772235 + B1_Mur2 SINE Alu 1 147 -2 8 756 537 203 16 8 chr12 22485301 22485425 -98772105 - MurSatRep1 Unknown Unknown -2011 126 2 8 756 293 236 18 45 chr12 22485843 22485954 -98771576 + Lx4B LINE L1 6947 7054 -4 8 756 185 132 26 0 chr12 22485963 22486001 -98771529 + GA-rich Low_complexity Low_complexity 2 40 0 8 756 1199 330 35 58 chr12 22486061 22486779 -98770751 - ORR1D-int LTR MaLR -108 1262 562 8 756 5170 239 49 22 chr12 22486789 22488170 -98769360 + Lx4B LINE L1 5637 7054 -4 8 756 487 343 64 45 chr12 22488211 22488517 -98769013 - ORR1D-int LTR MaLR -1219 361 24 8 756 180 111 0 0 chr12 22488536 22488563 -98768967 + (TTG)n Simple_repeat Simple_repeat 1 27 0 8 756 229 272 56 46 chr12 22488601 22488709 -98768821 - MTD LTR MaLR -39 380 272 8 756 1803 165 68 23 chr12 22488772 22488846 -98768684 + RLTR9D LTR ERVK 1 74 -329 8 756 3253 51 2 5 chr12 22488846 22489243 -98768287 - MTA_Mm LTR MaLR 0 396 1 8 756 1803 165 68 23 chr12 22489243 22489552 -98767978 + RLTR9D LTR ERVK 75 401 -2 8 756 357 358 53 16 chr12 22489554 22489744 -98767786 - MTD LTR MaLR -208 211 15 8 756 228 217 0 0 chr12 22490573 22490619 -98766911 + L1_Mur3 LINE L1 1791 1836 -4044 8 756 4892 131 24 45 chr12 22491147 22492053 -98765477 + RMER17D LTR ERVK 1 887 -2 8 756 41324 18 0 6 chr12 22492184 22498356 -98759174 - L1Md_A LINE L1 0 6582 452 8 756 562 170 209 0 chr12 22499071 22499253 -98758277 - Lx9 LINE L1 0 7644 7425 8 756 965 98 20 20 chr12 22499324 22499470 -98758060 + B1_Mm SINE Alu 1 146 -1 8 756 180 143 0 0 chr12 22499481 22499523 -98758007 + (A)n Simple_repeat Simple_repeat 1 42 0 8 756 1812 74 63 3 chr12 22499716 22500000 -98757530 + RLTR45 LTR ERVK 1 301 -181 8 756 1286 73 23 0 chr12 22500000 22500177 -98757353 + RLTR45 LTR ERVK 302 482 0 1 756 2441 61 68 24 chr12 22500177 22500514 -98757016 + RLTR45-int LTR ERVK 1 352 -6892 1 756 6535 52 47 1 chr12 22500514 22501315 -98756215 + RLTR45-int LTR ERVK 581 1418 -5826 1 756 25204 52 30 21 chr12 22501309 22504140 -98753390 + RLTR45-int LTR ERVK 1859 4745 -2499 1 756 180 0 0 0 chr12 22504140 22504160 -98753370 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 756 25204 52 30 21 chr12 22504160 22504715 -98752815 + RLTR45-int LTR ERVK 4746 5274 -1970 1 756 229 271 30 40 chr12 22504716 22504816 -98752714 - MER72B LTR ERV1 -390 378 280 3 756 5642 25 11 0 chr12 22504816 22505470 -98752060 + L1Md_T LINE L1 4926 5586 -297 4 756 8709 30 0 0 chr12 22505471 22506465 -98751065 + L1Md_T LINE L1 5588 6581 -1 4 756 16282 35 37 1 chr12 22506484 22508399 -98749131 + RLTR45-int LTR ERVK 5261 7244 0 5 756 3377 78 48 0 chr12 22508399 22508859 -98748671 + RLTR45 LTR ERVK 1 482 0 5 756 484 277 80 80 chr12 22508949 22509137 -98748393 + B3A SINE B2 3 190 -5 6 756 25 31 0 0 chr12 22510962 22510994 -98746536 + GC_rich Low_complexity Low_complexity 1 32 0 7 756 915 139 0 0 chr12 22512586 22512766 -98744764 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 756 306 196 0 0 chr12 22512779 22512876 -98744654 + (CA)n Simple_repeat Simple_repeat 2 98 0 8 756 339 259 12 0 chr12 22512933 22513014 -98744516 - ID2 SINE ID 0 83 2 9 756 761 175 0 28 chr12 22513135 22513276 -98744254 + B1_Mm SINE Alu 5 141 -6 1 756 447 348 38 17 chr12 22513297 22513534 -98743996 + MER46C DNA MER2_type 96 337 -1 1 756 1372 221 105 13 chr12 22513760 22514140 -98743390 + MTD LTR MaLR 5 419 0 1 756 1169 68 0 7 chr12 22514548 22514695 -98742835 - B1_Mus2 SINE Alu 0 147 2 1 756 490 250 9 0 chr12 22514745 22514857 -98742673 + PB1D9 SINE Alu 2 114 -6 1 756 505 203 151 123 chr12 22515746 22515813 -98741717 - B3 SINE B2 -64 152 100 1 756 859 133 27 34 chr12 22515813 22515961 -98741569 - B1_Mus1 SINE Alu 0 148 2 1 756 505 203 151 123 chr12 22515961 22516039 -98741491 - B3 SINE B2 -117 99 3 1 756 294 267 0 0 chr12 22516055 22516156 -98741374 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 756 686 216 61 25 chr12 22516164 22516329 -98741201 - B3 SINE B2 -4 212 45 1 756 776 186 21 7 chr12 22516510 22516651 -98740879 - B1_Mur1 SINE Alu -6 143 1 1 756 1055 307 120 14 chr12 22516913 22517330 -98740200 + MER63C DNA AcHobo 233 693 -237 2 756 245 290 52 41 chr12 22517265 22517362 -98740168 - MER63D DNA AcHobo -427 634 537 2 756 342 265 24 0 chr12 22517401 22517484 -98740046 + MER63C DNA AcHobo 691 775 -155 2 756 520 167 37 0 chr12 22517675 22517783 -98739747 + Lx3B LINE L1 6862 6973 0 2 756 183 42 0 0 chr12 22518025 22518049 -98739481 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2 756 1159 101 6 0 chr12 22518049 22518208 -98739322 - B2_Mm1a SINE B2 -33 160 1 2 756 276 194 153 0 chr12 22518703 22518775 -98738755 + MER5A1 DNA MER1_type 13 95 -71 2 756 520 296 9 84 chr12 22519004 22519218 -98738312 - ID_B1 SINE B4 -17 207 10 2 756 625 252 0 13 chr12 22519430 22519579 -98737951 + B1_Mm SINE Alu 1 147 0 2 756 234 128 26 0 chr12 22519818 22519857 -98737673 - MLT1C LTR MaLR -279 188 149 2 756 347 200 0 0 chr12 22520035 22520095 -98737435 - B3 SINE B2 -87 129 70 2 756 422 86 0 0 chr12 22520347 22520405 -98737125 - RMER6D LTR ERVK -662 58 1 3 756 265 253 74 25 chr12 22520405 22520479 -98737051 - B4A SINE B4 -212 80 3 3 756 497 318 68 0 chr12 22520777 22520909 -98736621 + RSINE1 SINE B4 21 161 -4 3 756 2479 141 16 45 chr12 22521924 22522347 -98735183 + MTC LTR MaLR 5 415 -6 3 756 198 322 92 49 chr12 22522751 22522914 -98734616 + L2c LINE L2 2791 2960 -459 3 756 1481 78 0 5 chr12 22522976 22523168 -98734362 - B2_Mm2 SINE B2 -4 191 1 3 756 323 287 82 31 chr12 22523238 22523335 -98734195 - RSINE1 SINE B4 -13 152 51 3 756 958 170 0 0 chr12 22523423 22523570 -98733960 + B1_Mur1 SINE Alu 3 149 0 3 756 381 305 191 49 chr12 22523805 22524129 -98733401 + ORR1E LTR MaLR 1 370 0 3 756 201 360 44 11 chr12 22524137 22524227 -98733303 + L2c LINE L2 3256 3348 -39 3 756 738 32 0 0 chr12 22524267 22524360 -98733170 + (TG)n Simple_repeat Simple_repeat 1 93 0 3 756 301 214 28 28 chr12 22524575 22524647 -98732883 - ID4 SINE ID -10 73 2 4 756 31 26 0 0 chr12 22525208 22525246 -98732284 + AT_rich Low_complexity Low_complexity 1 38 0 4 756 1328 86 16 0 chr12 22525342 22525529 -98732001 - B2_Mm2 SINE B2 -5 190 1 4 756 1560 62 0 0 chr12 22525546 22525739 -98731791 - B2_Mm1a SINE B2 0 193 1 4 756 500 272 18 0 chr12 22525739 22525853 -98731677 - RSINE1 SINE B4 -47 118 3 4 756 568 216 10 10 chr12 22526060 22526163 -98731367 - B1_Mur2 SINE Alu -40 109 7 4 756 426 243 144 72 chr12 22526171 22526366 -98731164 - B3 SINE B2 0 216 8 4 756 554 260 85 33 chr12 22527028 22527239 -98730291 + ID_B1 SINE B4 3 224 0 4 756 1588 247 59 3 chr12 22528283 22528673 -98728857 - MTD LTR MaLR -3 416 5 4 756 267 345 35 0 chr12 22528676 22528792 -98728738 + RMER15 LTR ERVL 440 559 -16 4 756 1433 274 14 32 chr12 22528972 22529307 -98728223 - ORR1D2 LTR MaLR -8 362 34 5 756 1097 131 91 14 chr12 22529307 22529517 -98728013 + URR1A DNA MER1_type 1 226 0 5 756 1433 274 14 32 chr12 22529517 22529550 -98727980 - ORR1D2 LTR MaLR -337 33 1 5 756 260 294 0 61 chr12 22531771 22531869 -98725661 - MLT1K LTR MaLR 0 595 504 5 756 190 192 56 37 chr12 22532716 22532770 -98724760 + MIRc SINE MIR 79 133 -135 5 756 1022 237 0 0 chr12 22532931 22533142 -98724388 + B3 SINE B2 2 212 -4 5 756 674 176 205 90 chr12 22533182 22533382 -98724148 - URR1B DNA MER1_type -1 224 2 5 756 423 273 78 8 chr12 22533671 22533800 -98723730 + HAL1-2a_MD LINE L1 2342 2479 -545 5 756 1254 141 98 22 chr12 22533835 22534060 -98723470 + MTC LTR MaLR 1 242 -179 5 756 494 47 0 15 chr12 22534079 22534144 -98723386 - B2_Mm2 SINE B2 -129 66 3 5 756 1446 63 16 0 chr12 22534149 22534338 -98723192 - B2_Mm1t SINE B2 0 193 2 5 756 927 150 0 25 chr12 22534338 22534495 -98723035 + MTC LTR MaLR 236 388 -33 5 756 248 288 52 35 chr12 22535041 22535156 -98722374 + L2c LINE L2 3218 3334 -53 6 756 1335 197 165 6 chr12 22535507 22535829 -98721701 + ORR1D1 LTR MaLR 1 373 -1 6 756 366 279 84 42 chr12 22535856 22535998 -98721532 + B1F SINE Alu 2 149 0 6 756 419 230 11 11 chr12 22536201 22536289 -98721241 + PB1D10 SINE Alu 17 104 -13 6 756 234 356 14 0 chr12 22536326 22536399 -98721131 + ID SINE ID 9 82 -142 6 756 611 140 18 27 chr12 22536755 22536865 -98720665 - URR1B DNA MER1_type -15 210 102 6 756 203 79 26 0 chr12 22536889 22536927 -98720603 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 6 756 1041 110 7 0 chr12 22536940 22537086 -98720444 - B1_Mm SINE Alu 0 147 1 6 756 324 129 15 88 chr12 22537086 22537148 -98720382 - URR1B DNA MER1_type -110 115 59 6 756 258 239 0 0 chr12 22537234 22537326 -98720204 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 6 756 853 239 14 29 chr12 22537613 22537820 -98719710 + B3 SINE B2 2 205 -11 6 756 1700 184 115 6 chr12 22538342 22538698 -98718832 - MTD LTR MaLR 0 419 25 7 756 1321 206 141 12 chr12 22538711 22539045 -98718485 - MTD-int LTR MaLR -6 1252 876 7 756 1875 223 24 62 chr12 22539028 22539497 -98718033 - MTD-int LTR MaLR -716 542 92 7 756 1087 217 237 3 chr12 22539553 22539891 -98717639 + MTD LTR MaLR 3 419 0 7 756 445 240 52 52 chr12 22539899 22540053 -98717477 + MTD-int LTR MaLR 3 156 -1102 7 756 473 276 65 19 chr12 22540198 22540353 -98717177 + RSINE1 SINE B4 3 164 -1 7 756 878 151 7 0 chr12 22540476 22540622 -98716908 - B1_Mus1 SINE Alu -1 147 1 7 756 582 244 0 32 chr12 22540680 22540803 -98716727 + PB1D9 SINE Alu 2 120 0 7 756 287 267 188 62 chr12 22540803 22540824 -98716706 + B4A SINE B4 87 248 -44 7 756 301 258 45 0 chr12 22540824 22540890 -98716640 + ID4_ SINE ID 9 77 -6 7 756 564 42 0 0 chr12 22540938 22541009 -98716521 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 7 756 520 263 119 15 chr12 22541430 22541631 -98715899 - B4A SINE B4 -68 224 3 7 756 337 252 53 154 chr12 22541644 22541757 -98715773 + MLT1B LTR MaLR 160 256 -134 7 756 2701 97 23 5 chr12 22541757 22542150 -98715380 - MTB LTR MaLR 0 400 1 8 756 337 273 60 125 chr12 22542150 22542283 -98715247 + MLT1B LTR MaLR 257 457 -10 7 756 390 243 203 27 chr12 22542363 22542425 -98715105 - ID_B1 SINE B4 0 224 150 8 756 938 155 0 0 chr12 22542425 22542567 -98714963 + B1_Mus1 SINE Alu 1 142 -6 8 756 390 243 203 27 chr12 22542567 22542652 -98714878 - ID_B1 SINE B4 -75 149 51 8 756 936 285 14 0 chr12 22542804 22543011 -98714519 + MTEa LTR MaLR 18 227 -152 8 756 181 125 200 0 chr12 22543223 22543263 -98714267 + L3 LINE CR1 916 963 -3526 8 756 204 304 54 0 chr12 22543489 22543545 -98713985 + MIRm SINE MIR 97 155 -121 8 756 195 301 95 26 chr12 22543633 22543749 -98713781 - MER5A DNA MER1_type -4 185 62 8 756 338 291 71 36 chr12 22543938 22544134 -98713396 - MLT1N2 LTR MaLR -5 557 355 8 757 370 246 121 60 chr12 22544619 22544801 -98712729 + RMER10A LTR ERVL 65 257 -185 8 757 576 0 0 0 chr12 22544810 22544874 -98712656 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 757 284 236 147 66 chr12 22544874 22545010 -98712520 + RMER10A LTR ERVL 296 442 0 8 757 484 262 119 14 chr12 22545150 22545293 -98712237 - RSINE1 SINE B4 -2 163 6 9 757 1692 225 33 78 chr12 22545920 22546115 -98711415 + MTD LTR MaLR 1 191 -228 9 757 837 262 28 9 chr12 22546115 22546327 -98711203 + B3 SINE B2 1 216 0 9 757 1692 226 32 80 chr12 22546327 22546569 -98710961 + MTD LTR MaLR 192 405 -14 9 757 870 129 0 67 chr12 22546935 22547084 -98710446 + B1_Mus1 SINE Alu 10 148 0 9 757 615 243 78 83 chr12 22547177 22547370 -98710160 + B3 SINE B2 2 193 -23 9 757 810 241 15 35 chr12 22547412 22547441 -98710089 - B3A SINE B2 0 198 172 9 757 198 0 0 0 chr12 22547441 22547463 -98710067 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 757 234 0 0 0 chr12 22547465 22547491 -98710039 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 757 810 241 15 35 chr12 22547491 22547660 -98709870 - B3A SINE B2 -27 171 1 9 757 418 269 82 0 chr12 22547677 22547811 -98709719 + L1MD2 LINE L1 5422 5566 -676 9 757 1443 182 166 138 chr12 22547812 22548272 -98709258 + MT2A LTR ERVL 1 462 -71 9 757 4252 142 44 25 chr12 22548367 22548827 -98708703 - RMER17D2 LTR ERVK -4 805 352 1 757 704 12 0 12 chr12 22548827 22548913 -98708617 + (GGAGA)n Simple_repeat Simple_repeat 2 86 0 1 757 4252 142 44 25 chr12 22548913 22549242 -98708288 - RMER17D2 LTR ERVK -458 351 2 1 757 385 248 200 0 chr12 22549249 22549354 -98708176 + RSINE1 SINE B4 4 129 -36 1 757 530 311 191 8 chr12 22549411 22549667 -98707863 + L1MD2 LINE L1 5597 5899 -460 9 757 747 33 0 0 chr12 22549669 22549759 -98707771 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 757 930 79 79 0 chr12 22549832 22549958 -98707572 - B1_Mus1 SINE Alu -12 136 1 1 757 716 282 13 43 chr12 22549990 22550220 -98707310 - ID_B1 SINE B4 0 224 2 1 757 239 292 75 43 chr12 22551095 22551188 -98706342 + RMER21A LTR ERV1 259 354 -593 1 757 474 18 0 0 chr12 22552525 22552580 -98704950 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 757 462 18 0 0 chr12 22552580 22552635 -98704895 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 1 757 507 39 39 0 chr12 22552808 22552886 -98704644 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 757 472 174 174 50 chr12 22552891 22553012 -98704518 - B1_Mur2 SINE Alu -13 136 1 1 757 780 233 83 0 chr12 22553038 22553231 -98704299 - B3 SINE B2 -5 211 3 1 757 304 309 81 101 chr12 22553457 22553666 -98703864 - MLT1F2 LTR MaLR -226 334 130 1 757 702 0 0 0 chr12 22553703 22553781 -98703749 + (TTTA)n Simple_repeat Simple_repeat 2 79 0 1 757 667 194 39 0 chr12 22553781 22553910 -98703620 - B1_Mus1 SINE Alu -12 136 3 1 757 517 122 0 42 chr12 22554248 22554368 -98703162 + C-rich Low_complexity Low_complexity 2 116 0 1 757 4105 61 82 0 chr12 22554601 22555122 -98702408 + LTRIS2 LTR ERV1 1 564 0 1 757 300 262 6 58 chr12 22555381 22555474 -98702056 - PB1D10 SINE Alu -15 134 40 1 757 315 155 183 0 chr12 22555556 22555627 -98701903 + B2_Mm2 SINE B2 3 86 -109 1 757 408 20 0 0 chr12 22555637 22555686 -98701844 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 757 585 0 0 0 chr12 22555686 22555750 -98701780 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 757 2588 116 12 10 chr12 22555827 22556229 -98701301 + RLTR9E LTR ERVK 1 403 -6 1 757 22 35 0 0 chr12 22556926 22556955 -98700575 + AT_rich Low_complexity Low_complexity 1 29 0 1 757 609 49 0 0 chr12 22557596 22557677 -98699853 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 757 316 286 55 0 chr12 22557713 22557804 -98699726 - RSINE1 SINE B4 -28 137 42 1 757 689 218 90 68 chr12 22557913 22558240 -98699290 - MTE2a LTR MaLR -14 365 44 1 757 1313 176 0 5 chr12 22558240 22558463 -98699067 - URR1B DNA MER1_type -3 222 1 1 757 921 159 14 0 chr12 22558494 22558639 -98698891 + B1_Mus1 SINE Alu 1 147 -1 1 757 787 222 99 11 chr12 22558668 22558859 -98698671 + B3 SINE B2 3 210 -6 1 757 198 91 0 0 chr12 22558869 22558902 -98698628 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 757 236 188 104 0 chr12 22558905 22558953 -98698577 - MTE2a LTR MaLR -326 53 1 1 757 2030 164 10 161 chr12 22560051 22560163 -98697367 + MTC LTR MaLR 1 114 -307 1 757 520 14 14 14 chr12 22560163 22560233 -98697297 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 757 2030 164 10 161 chr12 22560233 22560298 -98697232 + MTC LTR MaLR 115 115 -306 1 757 632 201 63 21 chr12 22560298 22560440 -98697090 - B1_Mur3 SINE Alu 0 149 2 1 757 2030 164 10 161 chr12 22560440 22560757 -98696773 + MTC LTR MaLR 115 421 0 1 757 208 312 79 18 chr12 22560759 22560873 -98696657 - MIRb SINE MIR -125 143 23 1 757 665 232 0 0 chr12 22561705 22561830 -98695700 - RSINE1 SINE B4 -38 127 3 1 757 607 259 60 30 chr12 22562058 22562257 -98695273 - B4A SINE B4 -86 206 2 1 757 185 269 170 50 chr12 22562260 22562401 -98695129 + MIRb SINE MIR 97 254 -14 1 757 1146 162 46 5 chr12 22563069 22563286 -98694244 - URR1A DNA MER1_type 0 226 1 1 757 10649 75 1 1 chr12 22564723 22566110 -98691420 + L1Md_F2 LINE L1 4199 5585 -298 1 757 7985 55 2 5 chr12 22566111 22567103 -98690427 + L1Md_F2 LINE L1 5587 6575 -7 1 757 665 177 8 8 chr12 22567122 22567247 -98690283 + ID_B1 SINE B4 92 216 -8 1 757 585 187 47 31 chr12 22567277 22567404 -98690126 + B1_Mur3 SINE Alu 9 137 -12 1 757 299 161 21 0 chr12 22567412 22567505 -98690025 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 1 757 550 218 60 0 chr12 22567711 22567844 -98689686 - ID_B1 SINE B4 -2 222 82 1 757 215 31 0 30 chr12 22567859 22567892 -98689638 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 757 800 92 0 0 chr12 22567892 22568011 -98689519 - B1_Mm SINE Alu -7 140 22 1 757 624 239 42 30 chr12 22568099 22568267 -98689263 - B3 SINE B2 -13 203 34 1 757 287 258 41 10 chr12 22568464 22568562 -98688968 + PB1D7 SINE Alu 13 113 -7 1 757 819 193 13 4 chr12 22569298 22569533 -98687997 + GA-rich Low_complexity Low_complexity 1 236 0 1 757 300 70 0 0 chr12 22570489 22570532 -98686998 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 757 18209 100 29 28 chr12 22571971 22572992 -98684538 + ETnERV3-int LTR ERVK 2982 3975 -1833 1 757 450 0 0 0 chr12 22572992 22573042 -98684488 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1 757 18209 100 29 28 chr12 22573042 22574814 -98682716 + ETnERV3-int LTR ERVK 3976 5775 -33 1 757 6049 74 23 34 chr12 22574832 22575062 -98682468 + RLTR13B3 LTR ERVK 1 232 -697 1 757 8052 54 1 2 chr12 22575062 22576047 -98681483 + L1Md_F2 LINE L1 5587 6570 -12 1 757 6049 74 23 34 chr12 22576047 22576755 -98680775 + RLTR13B3 LTR ERVK 233 929 0 1 757 1813 100 59 74 chr12 22577519 22577843 -98679687 - ORR1A2 LTR MaLR -8 319 1 1 757 291 254 0 0 chr12 22577843 22577910 -98679620 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 757 935 146 0 0 chr12 22577990 22578127 -98679403 - B1_Mur4 SINE Alu -13 137 1 1 757 247 309 151 23 chr12 22578148 22578320 -98679210 - B3A SINE B2 -3 195 2 1 757 590 268 14 72 chr12 22578337 22578546 -98678984 - B4A SINE B4 -72 220 24 1 757 797 235 16 21 chr12 22579440 22579631 -98677899 - ID_B1 SINE B4 -8 216 27 1 757 39766 47 12 3 chr12 22579632 22585899 -98671631 - L1Md_T LINE L1 0 6582 304 1 757 932 167 0 0 chr12 22585987 22586137 -98671393 - B1_Mur4 SINE Alu 0 150 1 1 757 289 208 62 49 chr12 22586139 22586220 -98671310 - PB1D10 SINE Alu -14 103 22 1 757 502 176 8 8 chr12 22589675 22589795 -98667735 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 757 203 262 126 39 chr12 22590366 22590493 -98667037 - MIRb SINE MIR -66 202 65 1 757 653 251 31 0 chr12 22590949 22591112 -98666418 - B3A SINE B2 -30 168 1 1 757 2269 97 41 6 chr12 22591119 22591460 -98666070 - L1_Mus3 LINE L1 -6 6632 6280 1 757 1374 87 5 11 chr12 22591471 22591657 -98665873 - B2_Mm1t SINE B2 -7 186 2 1 757 395 208 262 23 chr12 22591668 22591936 -98665594 - L1MC1 LINE L1 0 6333 6002 1 757 577 167 28 17 chr12 22592415 22592592 -98664938 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 757 207 233 29 0 chr12 22592611 22592714 -98664816 + (TG)n Simple_repeat Simple_repeat 2 107 0 1 757 542 177 12 12 chr12 22592732 22592892 -98664638 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 757 198 131 42 78 chr12 22593145 22593311 -98664219 + (TAA)n Simple_repeat Simple_repeat 2 161 0 1 757 579 311 40 100 chr12 22593311 22593429 -98664101 - RLTR11A2 LTR ERVK -85 442 348 1 757 1051 75 0 0 chr12 22593429 22593563 -98663967 - B1_Mm SINE Alu -13 134 1 1 757 579 311 40 100 chr12 22593563 22593773 -98663757 - RLTR11A2 LTR ERVK -180 347 134 1 757 283 167 9 29 chr12 22593945 22594050 -98663480 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 1 757 413 191 17 11 chr12 22594066 22594241 -98663289 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 1 757 564 229 55 7 chr12 22594307 22594452 -98663078 + Lx2B LINE L1 6632 6783 -217 1 757 28 29 0 0 chr12 22594491 22594526 -98663004 + AT_rich Low_complexity Low_complexity 1 35 0 1 757 258 32 0 0 chr12 22594551 22594582 -98662948 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 757 466 173 15 0 chr12 22594669 22594802 -98662728 + (TA)n Simple_repeat Simple_repeat 1 135 0 1 757 542 236 71 10 chr12 22594911 22595082 -98662448 + Lx2B LINE L1 6623 6796 -212 1 757 208 200 49 12 chr12 22595094 22595175 -98662355 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 1 757 189 0 0 0 chr12 22595178 22595199 -98662331 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 1 757 1421 246 86 14 chr12 22595205 22595775 -98661755 + L1_Mur3 LINE L1 1472 2082 -3798 1 757 904 131 14 7 chr12 22596043 22596189 -98661341 - B1_Mus1 SINE Alu 0 148 2 1 757 316 256 0 0 chr12 22596486 22596564 -98660966 - ORR1C2 LTR MaLR -14 370 293 1 757 434 294 82 41 chr12 22596775 22597313 -98660217 - MurSatRep1 Unknown Unknown 0 2137 1747 1 757 420 286 7 7 chr12 22597267 22597490 -98660040 - MMSAT4 Satellite Satellite 0 223 1 1 757 459 275 13 13 chr12 22597552 22597858 -98659672 - MMSAT4 Satellite Satellite -1 306 1 1 757 499 324 34 33 chr12 22597798 22598349 -98659181 - MurSatRep1 Unknown Unknown -88 2049 1747 1 757 8294 188 102 35 chr12 22598390 22599376 -98658154 - MurSatRep1 Unknown Unknown -2 2135 1122 1 757 1285 92 6 0 chr12 22599376 22599549 -98657981 + B2_Mm1a SINE B2 2 175 -18 1 757 8294 188 102 35 chr12 22599549 22600412 -98657118 - MurSatRep1 Unknown Unknown -1016 1121 177 1 757 281 303 81 16 chr12 22600412 22600536 -98656994 + B1_Mur2 SINE Alu 1 132 -17 1 757 8294 188 102 35 chr12 22600536 22600685 -98656845 - MurSatRep1 Unknown Unknown -1961 176 3 1 757 276 332 81 52 chr12 22600777 22600987 -98656543 + B3 SINE B2 1 216 0 1 757 296 241 25 41 chr12 22601103 22601224 -98656306 + Lx4B LINE L1 6936 7054 -4 1 757 1293 334 31 42 chr12 22601326 22602036 -98655494 - ORR1C2-int LTR MaLR -107 1263 562 1 757 2214 230 11 6 chr12 22602051 22602576 -98654954 + Lx4B LINE L1 5641 6168 -890 1 757 3299 225 16 8 chr12 22602580 22603346 -98654184 + Lx4B LINE L1 6283 7054 -4 1 757 358 321 70 20 chr12 22603478 22603678 -98653852 - ORR1C2-int LTR MaLR -1107 263 54 1 757 230 354 68 23 chr12 22603758 22603891 -98653639 - MTD LTR MaLR -16 403 265 1 757 570 52 0 0 chr12 22603947 22604021 -98653509 + RLTR9D LTR ERVK 1 74 -329 1 757 2736 53 11 0 chr12 22604021 22604398 -98653132 - MTA_Mm LTR MaLR 0 396 16 1 757 404 276 51 51 chr12 22605625 22605862 -98651668 + L1_Mur3 LINE L1 870 1106 -6622 1 757 449 278 83 0 chr12 22606159 22606389 -98651141 + L1_Mur3 LINE L1 1314 1562 -4315 1 757 407 250 9 122 chr12 22606402 22606616 -98650914 + L1_Mur3 LINE L1 1647 1836 -4044 1 757 4959 109 74 28 chr12 22607200 22607547 -98649983 + RMER17D LTR ERVK 1 367 -522 1 757 1328 19 6 0 chr12 22607547 22607706 -98649824 + (TCTCC)n Simple_repeat Simple_repeat 1 160 0 1 757 4959 109 74 28 chr12 22607706 22608206 -98649324 + RMER17D LTR ERVK 368 886 -3 1 757 258 239 0 0 chr12 22659200 22659292 -98598238 + (TGGA)n Simple_repeat Simple_repeat 1 92 0 1 757 324 129 15 88 chr12 22659378 22659440 -98598090 + URR1A DNA MER1_type 59 115 -111 1 757 1041 110 7 0 chr12 22659440 22659586 -98597944 + B1_Mm SINE Alu 1 147 0 2 757 214 50 50 0 chr12 22659599 22659639 -98597891 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 2 757 625 131 18 27 chr12 22659662 22659772 -98597758 + URR1A DNA MER1_type 102 210 -16 1 757 234 356 14 0 chr12 22660129 22660202 -98597328 - ID SINE ID -142 82 9 2 757 419 230 11 11 chr12 22660239 22660327 -98597203 - PB1D10 SINE Alu -13 104 17 2 757 366 279 84 42 chr12 22660530 22660672 -98596858 - B1F SINE Alu 0 149 2 2 757 1335 197 165 6 chr12 22660699 22661021 -98596509 - ORR1D1 LTR MaLR -1 373 1 2 757 248 288 52 35 chr12 22661372 22661487 -98596043 - L2c LINE L2 -53 3334 3218 2 757 927 150 0 25 chr12 22662033 22662190 -98595340 - MTC LTR MaLR -33 388 236 2 757 1432 64 21 0 chr12 22662190 22662378 -98595152 + B2_Mm1t SINE B2 2 193 0 2 757 472 62 0 15 chr12 22662384 22662449 -98595081 + B2_Mm2 SINE B2 3 66 -129 2 757 1254 141 98 22 chr12 22662468 22662693 -98594837 - MTC LTR MaLR -179 242 1 2 757 393 267 86 8 chr12 22662728 22662845 -98594685 - HAL1-2a_MD LINE L1 -545 2479 2354 2 757 674 176 205 90 chr12 22663137 22663337 -98594193 + URR1B DNA MER1_type 2 224 -1 2 757 1022 237 0 0 chr12 22663377 22663588 -98593942 - B3 SINE B2 -4 212 2 2 757 190 192 56 37 chr12 22663749 22663803 -98593727 - MIRc SINE MIR -135 133 79 2 757 260 294 0 61 chr12 22664650 22664748 -98592782 + MLT1K LTR MaLR 504 595 0 2 757 1433 274 14 32 chr12 22666969 22667002 -98590528 + ORR1D2 LTR MaLR 1 33 -337 2 757 1105 131 91 14 chr12 22667002 22667212 -98590318 - URR1A DNA MER1_type 0 226 1 2 757 1294 274 14 32 chr12 22667212 22667547 -98589983 + ORR1D2 LTR MaLR 34 362 -8 2 757 226 345 35 0 chr12 22667727 22667843 -98589687 - RMER15 LTR ERVL -16 559 440 2 757 1489 244 56 3 chr12 22667846 22668237 -98589293 + MTD LTR MaLR 5 416 -3 2 757 549 260 85 33 chr12 22669281 22669492 -98588038 - ID_B1 SINE B4 0 224 3 2 757 363 256 149 77 chr12 22670151 22670346 -98587184 + B3 SINE B2 8 216 0 2 757 531 216 10 10 chr12 22670354 22670457 -98587073 + B1_Mur2 SINE Alu 7 109 -40 2 757 461 272 18 0 chr12 22670664 22670778 -98586752 + RSINE1 SINE B4 3 118 -47 2 757 1560 62 0 0 chr12 22670778 22670971 -98586559 + B2_Mm1a SINE B2 1 193 0 2 757 1330 86 16 0 chr12 22670988 22671175 -98586355 + B2_Mm2 SINE B2 1 190 -5 2 757 31 26 0 0 chr12 22671271 22671309 -98586221 + AT_rich Low_complexity Low_complexity 1 38 0 2 757 296 214 28 28 chr12 22671870 22671942 -98585588 + ID4 SINE ID 2 73 -10 2 757 738 32 0 0 chr12 22672157 22672250 -98585280 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 757 284 305 89 84 chr12 22672388 22672712 -98584818 - ORR1E LTR MaLR 0 370 1 2 757 953 170 0 0 chr12 22672947 22673094 -98584436 - B1_Mur1 SINE Alu 0 149 3 2 757 286 257 13 39 chr12 22673182 22673259 -98584271 + RSINE1 SINE B4 51 125 -40 2 757 1460 84 0 5 chr12 22673349 22673541 -98583989 + B2_Mm2 SINE B2 1 191 -4 2 757 2288 141 16 45 chr12 22674170 22674593 -98582937 - MTC LTR MaLR -6 415 5 2 758 426 313 76 0 chr12 22675609 22675740 -98581790 - RSINE1 SINE B4 -4 161 21 2 758 215 243 79 26 chr12 22676043 22676112 -98581418 + B4A SINE B4 8 80 -212 2 758 391 86 0 0 chr12 22676112 22676170 -98581360 + RMER6D LTR ERVK 1 58 -662 2 758 318 217 0 0 chr12 22676422 22676482 -98581048 + B3 SINE B2 70 129 -87 2 758 626 252 0 13 chr12 22676936 22677085 -98580445 - B1_Mm SINE Alu 0 147 1 2 758 435 267 51 126 chr12 22677297 22677511 -98580019 + ID_B1 SINE B4 10 207 -17 2 758 245 194 153 0 chr12 22677740 22677812 -98579718 - MER5A1 DNA MER1_type -71 95 13 2 758 1082 101 6 0 chr12 22678307 22678466 -98579064 + B2_Mm1a SINE B2 1 160 -33 2 758 183 42 0 0 chr12 22678466 22678490 -98579040 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2 758 513 167 37 0 chr12 22678732 22678840 -98578690 - Lx3B LINE L1 0 6973 6862 2 758 302 265 24 0 chr12 22679031 22679114 -98578416 - MER63C DNA AcHobo -155 775 691 2 758 841 313 117 15 chr12 22679185 22679597 -98577933 - MER63C DNA AcHobo -237 693 240 2 758 746 193 21 7 chr12 22679864 22680005 -98577525 + B1_Mur1 SINE Alu 1 143 -6 2 758 629 210 72 142 chr12 22680186 22680351 -98577179 + B3 SINE B2 45 212 -4 2 758 294 267 0 0 chr12 22680359 22680460 -98577070 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 758 447 211 151 123 chr12 22680476 22680554 -98576976 + B3 SINE B2 3 99 -117 2 758 887 119 27 34 chr12 22680554 22680702 -98576828 + B1_Mus1 SINE Alu 2 148 0 2 758 447 211 151 123 chr12 22680702 22680769 -98576761 + B3 SINE B2 100 152 -64 2 758 486 250 9 0 chr12 22681658 22681770 -98575760 - PB1D9 SINE Alu -6 114 2 2 758 1161 63 0 7 chr12 22681823 22681967 -98575563 + B1_Mus2 SINE Alu 5 147 0 2 758 1398 216 105 13 chr12 22682375 22682755 -98574775 - MTD LTR MaLR 0 419 5 2 758 367 348 38 17 chr12 22682981 22683218 -98574312 - MER46C DNA MER2_type -1 337 96 2 758 758 175 0 28 chr12 22683239 22683380 -98574150 - B1_Mm SINE Alu -6 141 5 2 758 337 259 12 0 chr12 22683501 22683582 -98573948 + ID2 SINE ID 2 83 0 2 758 813 158 0 0 chr12 22683691 22683868 -98573662 + (TG)n Simple_repeat Simple_repeat 2 178 0 2 758 310 146 0 18 chr12 22683868 22683924 -98573606 - HAL1-3A_ME LINE L1 -828 2030 1976 2 758 25 31 0 0 chr12 22685519 22685551 -98571979 + GC_rich Low_complexity Low_complexity 1 32 0 2 758 432 277 80 80 chr12 22687376 22687564 -98569966 - B3A SINE B2 -5 190 3 2 758 3371 80 46 0 chr12 22687654 22688115 -98569415 - RLTR45 LTR ERVK 0 482 1 2 758 9956 37 17 3 chr12 22688115 22690032 -98567498 - RLTR45-int LTR ERVK 0 7244 5261 2 758 9300 24 4 0 chr12 22690045 22691800 -98565730 - L1Md_T LINE L1 -1 6581 4820 2 758 25419 52 30 21 chr12 22691800 22692350 -98565180 - RLTR45-int LTR ERVK -1974 5270 4762 2 758 180 0 0 0 chr12 22692350 22692370 -98565160 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 758 25419 52 30 21 chr12 22692370 22695201 -98562329 - RLTR45-int LTR ERVK -2483 4761 1861 2 758 6602 49 46 1 chr12 22695195 22695997 -98561533 - RLTR45-int LTR ERVK -5826 1418 581 2 758 2452 58 68 24 chr12 22695997 22696334 -98561196 - RLTR45-int LTR ERVK -6892 352 1 2 758 3377 76 45 4 chr12 22696334 22696797 -98560733 - RLTR45 LTR ERVK 0 482 1 2 758 204 122 0 0 chr12 22696990 22697031 -98560499 + (T)n Simple_repeat Simple_repeat 1 41 0 2 758 995 91 20 20 chr12 22697042 22697188 -98560342 - B1_Mm SINE Alu -1 146 1 2 758 580 165 209 0 chr12 22697259 22697441 -98560089 + Lx9 LINE L1 7425 7644 0 2 758 38488 17 1 7 chr12 22698157 22703330 -98554200 + L1Md_A LINE L1 452 5586 -297 2 758 8552 34 1 0 chr12 22703330 22704325 -98553205 + L1Md_A LINE L1 5587 6582 0 2 758 4897 131 24 45 chr12 22704457 22705363 -98552167 - RMER17D LTR ERVK -2 887 1 2 758 228 217 0 0 chr12 22705891 22705937 -98551593 - L1_Mur3 LINE L1 -4044 1836 1791 2 758 357 358 53 16 chr12 22706767 22706957 -98550573 + MTD LTR MaLR 15 211 -208 2 758 1794 168 68 23 chr12 22706959 22707268 -98550262 - RLTR9D LTR ERVK -2 401 75 2 758 3280 45 2 5 chr12 22707268 22707665 -98549865 + MTA_Mm LTR MaLR 1 396 0 2 758 1794 168 68 23 chr12 22707665 22707739 -98549791 - RLTR9D LTR ERVK -329 74 1 2 758 229 272 56 46 chr12 22707802 22707910 -98549620 + MTD LTR MaLR 272 380 -39 2 758 180 111 0 0 chr12 22707948 22707975 -98549555 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 758 507 346 62 33 chr12 22707994 22708297 -98549233 + ORR1D-int LTR MaLR 24 361 -1219 2 758 5102 234 58 23 chr12 22708338 22709709 -98547821 - Lx4B LINE L1 -4 7054 5637 2 758 1175 329 36 59 chr12 22709719 22710436 -98547094 + ORR1D-int LTR MaLR 562 1262 -108 2 758 211 211 0 0 chr12 22710495 22710533 -98546997 + T-rich Low_complexity Low_complexity 3 40 0 2 758 293 236 18 45 chr12 22710542 22710653 -98546877 - Lx4B LINE L1 -4 7054 6947 2 758 509 211 16 8 chr12 22711071 22711195 -98546335 + MurSatRep1 Unknown Unknown 2 126 -2011 2 758 345 295 56 35 chr12 22711201 22711345 -98546185 - B1_Mur2 SINE Alu -2 147 1 2 758 7931 192 39 34 chr12 22711345 22712189 -98545341 + MurSatRep1 Unknown Unknown 284 1125 -1012 2 758 1150 144 6 0 chr12 22712189 22712370 -98545160 - B2_Mm1a SINE B2 -10 183 2 2 758 7931 192 39 34 chr12 22712370 22713368 -98544162 + MurSatRep1 Unknown Unknown 1126 2135 -2 2 758 521 316 30 30 chr12 22713409 22713709 -98543821 + MurSatRep1 Unknown Unknown 1750 2049 -88 2 758 464 260 37 29 chr12 22713649 22714203 -98543327 + MMSAT4 Satellite Satellite 1 558 0 2 758 235 257 31 166 chr12 22714179 22714253 -98543277 + MurSatRep1 Unknown Unknown 1852 1921 -216 2 758 3037 94 0 0 chr12 22714253 22714658 -98542872 + L1_Mus1 LINE L1 6163 6567 0 2 758 235 257 31 166 chr12 22714658 22714812 -98542718 + MurSatRep1 Unknown Unknown 1922 2049 -88 2 758 379 269 5 5 chr12 22714673 22714820 -98542710 + MMSAT4 Satellite Satellite 1 147 0 2 758 277 282 0 0 chr12 22715061 22715139 -98542391 + ORR1C2 LTR MaLR 293 370 -14 2 758 828 160 21 0 chr12 22715428 22715572 -98541958 + B1_Mus1 SINE Alu 2 148 0 2 758 2106 248 68 28 chr12 22715775 22716774 -98540756 - L1_Mur2 LINE L1 -3753 2127 1087 2 758 490 247 47 29 chr12 22716759 22716930 -98540600 - L1_Mur2 LINE L1 -6507 1221 1048 2 758 207 0 0 0 chr12 22717495 22717518 -98540012 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 758 477 50 0 0 chr12 22717518 22717577 -98539953 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 758 22 35 0 0 chr12 22717599 22717628 -98539902 + AT_rich Low_complexity Low_complexity 1 29 0 2 758 578 219 59 12 chr12 22717639 22717812 -98539718 - Lx2B LINE L1 -212 6796 6623 2 758 391 206 0 20 chr12 22717854 22718110 -98539420 + (TA)n Simple_repeat Simple_repeat 1 250 0 2 758 1963 119 12 51 chr12 22718141 22718476 -98539054 + RLTRETN_Mm LTR ERVK 1 322 0 2 758 14251 66 11 34 chr12 22718477 22720440 -98537090 + MMETn-int LTR ERVK 2 1919 -2925 2 758 9093 120 8 19 chr12 22720454 22721858 -98535672 + MMETn-int LTR ERVK 3457 4844 0 2 758 1685 126 94 52 chr12 22721858 22722167 -98535363 + RLTRETN_Mm LTR ERVK 1 322 0 2 758 614 289 43 24 chr12 22722342 22722552 -98534978 + RLTR11A2 LTR ERVK 132 346 -181 2 758 1153 82 0 0 chr12 22722552 22722699 -98534831 + B1_Mm SINE Alu 1 147 0 2 758 560 309 41 89 chr12 22722699 22722804 -98534726 + RLTR11A2 LTR ERVK 334 432 -96 2 758 24 53 0 0 chr12 22722818 22722856 -98534674 + AT_rich Low_complexity Low_complexity 1 38 0 2 758 422 81 47 64 chr12 22722859 22723030 -98534500 + (TTA)n Simple_repeat Simple_repeat 2 169 0 2 758 713 134 20 7 chr12 22723279 22723429 -98534101 + (CA)n Simple_repeat Simple_repeat 1 152 0 2 758 411 216 25 7 chr12 22723473 22723753 -98533777 + (CA)n Simple_repeat Simple_repeat 1 285 0 2 758 247 248 44 44 chr12 22723757 22723871 -98533659 - L1M1 LINE L1 -401 5899 5786 2 758 450 245 252 4 chr12 22724230 22724496 -98533034 + L1MC1 LINE L1 6002 6333 0 2 758 2077 108 60 9 chr12 22724506 22724841 -98532689 + L1_Mus3 LINE L1 6279 6630 -8 3 758 666 288 25 0 chr12 22724852 22725015 -98532515 + B3A SINE B2 2 168 -30 3 758 262 309 95 47 chr12 22725409 22725599 -98531931 + MIRb SINE MIR 4 202 -66 3 758 279 0 0 0 chr12 22726174 22726205 -98531325 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 758 369 0 0 0 chr12 22726205 22726245 -98531285 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 758 836 186 0 0 chr12 22727155 22727295 -98530235 + B1_Mur4 SINE Alu 6 145 -5 3 758 291 295 31 131 chr12 22727159 22727350 -98530180 + B4A SINE B4 94 265 -27 3 758 237 217 0 0 chr12 22727373 22727419 -98530111 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 758 2333 87 0 80 chr12 22727419 22727770 -98529760 + ORR1A2 LTR MaLR 1 323 -4 3 758 360 43 0 0 chr12 22727782 22727828 -98529702 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 758 520 253 44 25 chr12 22728529 22728687 -98528843 - RSINE1 SINE B4 -4 161 1 3 758 24 0 0 0 chr12 22728692 22728716 -98528814 + AT_rich Low_complexity Low_complexity 1 24 0 3 758 1083 189 28 5 chr12 22729381 22729599 -98527931 - URR1B DNA MER1_type -1 224 2 3 758 210 174 0 21 chr12 22729805 22729852 -98527678 + GA-rich Low_complexity Low_complexity 3 48 0 3 758 2143 189 27 42 chr12 22731111 22731559 -98525971 - RLTR1D LTR ERV1 0 605 165 3 758 17325 237 32 11 chr12 22731608 22735356 -98522174 - MMERGLN-int LTR ERV1 -3698 3858 34 3 758 2194 192 21 49 chr12 22735387 22735863 -98521667 - RLTR1D LTR ERV1 0 605 135 3 758 226 324 46 37 chr12 22736453 22736562 -98520968 - MLT1I LTR MaLR -50 361 252 3 758 387 0 0 0 chr12 22736994 22737037 -98520493 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 758 344 103 17 0 chr12 22738035 22738093 -98519437 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 3 758 458 231 0 9 chr12 22738759 22738868 -98518662 - PB1D7 SINE Alu 0 120 13 3 758 230 265 62 86 chr12 22738782 22738910 -98518620 - RLTR25B LTR ERVK -532 496 372 3 758 454 259 118 31 chr12 22739051 22739246 -98518284 + B3 SINE B2 5 216 0 3 758 847 103 0 0 chr12 22739323 22739439 -98518091 + B1_Mm SINE Alu 24 139 -8 3 758 211 28 56 0 chr12 22739439 22739475 -98518055 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 758 253 275 113 32 chr12 22739490 22739598 -98517932 + B1F SINE Alu 1 119 -30 3 758 2597 98 0 45 chr12 22739598 22739974 -98517556 + RLTR10D LTR ERVK 1 359 0 3 758 253 275 113 32 chr12 22739974 22739989 -98517541 + B1F SINE Alu 120 134 -15 3 758 8118 61 29 1 chr12 22739989 22741002 -98516528 + IAP-d-int LTR ERVK 16 1056 -5486 3 758 13215 53 2 0 chr12 22741000 22742569 -98514961 + IAP-d-int LTR ERVK 4970 6542 0 3 758 2401 95 0 48 chr12 22742569 22742922 -98514608 + RLTR10D LTR ERVK 1 336 -23 3 758 204 111 0 0 chr12 22743150 22743186 -98514344 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 758 306 87 0 0 chr12 22743192 22743238 -98514292 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 758 579 207 48 32 chr12 22743249 22743374 -98514156 - B1_Mur3 SINE Alu -13 136 10 3 758 700 177 16 8 chr12 22743407 22743532 -98513998 - ID_B1 SINE B4 -7 217 92 3 758 1278 165 9 18 chr12 22745038 22745266 -98512264 + URR1A DNA MER1_type 1 226 0 3 758 210 306 133 31 chr12 22745940 22746068 -98511462 - MIRb SINE MIR -14 254 114 3 758 613 233 61 36 chr12 22746093 22746289 -98511241 + B4A SINE B4 6 206 -86 3 758 684 256 0 0 chr12 22746512 22746641 -98510889 + RSINE1 SINE B4 3 131 -34 3 758 254 251 234 37 chr12 22746695 22746853 -98510677 - MER2 DNA MER2_type -149 196 8 3 758 225 264 0 40 chr12 22747296 22747371 -98510159 + G-rich Low_complexity Low_complexity 5 76 0 3 758 260 315 72 30 chr12 22747469 22747585 -98509945 + MIRc SINE MIR 20 142 -126 3 758 2222 154 11 130 chr12 22747585 22747904 -98509626 - MTC LTR MaLR 0 421 116 3 758 643 201 49 21 chr12 22747904 22748046 -98509484 + B1_Mur3 SINE Alu 4 149 0 3 758 2222 154 11 130 chr12 22748046 22748082 -98509448 - MTC LTR MaLR -306 115 115 3 758 387 0 0 0 chr12 22748082 22748125 -98509405 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 758 396 0 0 0 chr12 22748125 22748168 -98509362 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 758 2222 154 11 130 chr12 22748168 22748288 -98509242 - MTC LTR MaLR -306 115 2 3 758 260 315 72 30 chr12 22748288 22748338 -98509192 + MIRc SINE MIR 143 193 -75 3 758 273 146 83 0 chr12 22749386 22749434 -98508096 + MTE2a LTR MaLR 1 52 -327 3 758 35 0 0 0 chr12 22749438 22749473 -98508057 + AT_rich Low_complexity Low_complexity 1 35 0 3 758 786 222 99 11 chr12 22749482 22749673 -98507857 - B3 SINE B2 -6 210 3 3 758 866 179 14 0 chr12 22749702 22749847 -98507683 - B1_Mus1 SINE Alu -1 147 1 3 758 719 268 106 69 chr12 22749847 22749878 -98507652 + MTE2a LTR MaLR 49 76 -343 3 758 1360 167 0 5 chr12 22749878 22750101 -98507429 + URR1B DNA MER1_type 1 222 -3 3 758 766 267 113 39 chr12 22750101 22750412 -98507118 + MTE2a LTR MaLR 35 404 -15 3 758 319 333 39 79 chr12 22750519 22750646 -98506884 + RSINE1 SINE B4 34 155 -10 3 758 486 0 0 0 chr12 22750646 22750700 -98506830 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 758 522 0 0 0 chr12 22750700 22750757 -98506773 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 758 2508 121 39 3 chr12 22752123 22752512 -98505018 - RLTR9E LTR ERVK -6 403 1 3 758 552 132 0 52 chr12 22752577 22752588 -98504942 - B2_Mm2 SINE B2 -102 93 87 3 758 609 14 0 0 chr12 22752588 22752658 -98504872 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 758 552 132 0 52 chr12 22752658 22752742 -98504788 - B2_Mm2 SINE B2 -109 86 3 3 758 386 244 0 0 chr12 22752824 22752902 -98504628 + PB1D10 SINE Alu 40 117 0 3 758 422 203 14 0 chr12 22752907 22752981 -98504549 + RSINE1 SINE B4 53 127 -38 3 758 450 276 22 22 chr12 22752972 22753109 -98504421 + B1F1 SINE Alu 13 149 0 3 758 620 271 68 16 chr12 22753140 22753331 -98504199 + B3 SINE B2 15 215 -1 3 758 692 204 23 120 chr12 22753841 22754058 -98503472 - B3A SINE B2 0 198 3 3 758 286 256 85 8 chr12 22754138 22754256 -98503274 + L2c LINE L2 3038 3164 -223 3 758 383 296 28 0 chr12 22754444 22754552 -98502978 + PB1D7 SINE Alu 4 114 -6 3 758 320 319 8 41 chr12 22754560 22754681 -98502849 - MIRb SINE MIR -150 118 2 3 758 728 278 48 42 chr12 22755842 22756131 -98501399 + B4A SINE B4 2 292 0 3 758 866 147 0 7 chr12 22756412 22756556 -98500974 - URR1B DNA MER1_type 0 225 83 3 758 243 331 82 27 chr12 22757241 22757387 -98500143 - RMER15 LTR ERVL -6 569 416 3 758 274 254 0 29 chr12 22757667 22757736 -98499794 - MT2A LTR ERVL -458 75 9 3 758 819 235 139 27 chr12 22758238 22758530 -98499000 - MTE2b LTR MaLR 0 359 35 3 758 846 166 160 0 chr12 22758530 22758717 -98498813 + URR1A DNA MER1_type 1 217 -9 3 758 826 112 5 38 chr12 22759585 22759770 -98497760 + G-rich Low_complexity Low_complexity 2 180 0 3 758 596 231 31 0 chr12 22760121 22760251 -98497279 + B1_Mus1 SINE Alu 3 136 -12 3 758 654 13 0 0 chr12 22760251 22760326 -98497204 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 3 758 277 293 81 101 chr12 22760382 22760591 -98496939 + MLT1F2 LTR MaLR 130 334 -226 3 758 844 223 81 0 chr12 22760817 22761014 -98496516 + B3 SINE B2 3 215 -1 3 758 428 214 157 33 chr12 22761039 22761160 -98496370 + B1_Mur2 SINE Alu 1 136 -13 3 758 531 0 0 0 chr12 22761166 22761225 -98496305 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 3 758 212 0 0 35 chr12 22761235 22761264 -98496266 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 3 758 426 20 0 0 chr12 22761418 22761469 -98496061 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 3 758 297 0 0 0 chr12 22761470 22761503 -98496027 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 758 513 0 0 0 chr12 22763752 22763809 -98493721 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 758 640 213 88 79 chr12 22763884 22764066 -98493464 - B3 SINE B2 -23 172 2 3 758 195 42 0 0 chr12 22764082 22764106 -98493424 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 3 758 216 0 0 0 chr12 22764106 22764129 -98493401 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 758 1054 90 0 0 chr12 22764129 22764263 -98493267 - B1_Mus1 SINE Alu -13 135 2 3 758 1331 83 5 40 chr12 22764309 22764509 -98493021 - B2_Mm2 SINE B2 0 195 3 3 758 316 269 9 88 chr12 22764541 22764655 -98492875 - RLTR25A LTR ERVK -476 627 523 3 758 822 149 14 41 chr12 22764556 22764703 -98492827 - B1_Mus1 SINE Alu 0 148 6 3 758 4109 64 2 0 chr12 22764758 22765260 -98492270 + RLTR1C LTR ERV1 1 503 0 3 758 203 258 0 0 chr12 22765261 22765323 -98492207 + T-rich Low_complexity Low_complexity 1 62 0 3 758 800 252 59 20 chr12 22765665 22765867 -98491663 - MTD LTR MaLR -14 405 196 3 758 805 250 97 0 chr12 22765906 22766102 -98491428 - B3 SINE B2 -1 215 1 3 758 867 198 24 35 chr12 22766102 22766298 -98491232 - MTD LTR MaLR -212 195 1 3 758 602 221 115 20 chr12 22766921 22767069 -98490461 + RSINE1 SINE B4 2 163 -2 3 758 666 0 0 0 chr12 22767073 22767147 -98490383 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 758 348 242 149 42 chr12 22767264 22767432 -98490098 - RMER10A LTR ERVL 0 442 257 3 758 306 304 87 74 chr12 22767452 22767683 -98489847 - RMER10A LTR ERVL -144 298 65 3 758 3388 79 18 0 chr12 22768187 22768632 -98488898 - MURVY-LTR LTR ERV1 -64 455 3 3 758 333 270 56 35 chr12 22768667 22768809 -98488721 + MLT1N2 LTR MaLR 413 557 -5 3 758 181 310 95 26 chr12 22768998 22769114 -98488416 + MER5A DNA MER1_type 62 185 -4 3 758 190 273 55 0 chr12 22769204 22769259 -98488271 - MIRc SINE MIR -117 151 94 3 758 190 122 195 0 chr12 22769471 22769512 -98488018 - L3 LINE CR1 -3526 963 915 3 758 943 286 10 0 chr12 22769726 22769932 -98487598 - MTEa LTR MaLR -154 225 18 3 758 258 219 172 0 chr12 22770084 22770148 -98487382 + ID_B1 SINE B4 51 125 -99 4 758 246 269 71 80 chr12 22770112 22770161 -98487369 + PB1D10 SINE Alu 5 51 -66 4 758 983 130 7 0 chr12 22770161 22770307 -98487223 - B1_Mus1 SINE Alu -1 147 1 4 758 246 269 71 80 chr12 22770307 22770370 -98487160 + PB1D10 SINE Alu 52 116 -1 4 758 366 263 47 158 chr12 22770515 22770590 -98486940 - MLT1B LTR MaLR -62 328 254 4 758 2577 110 25 5 chr12 22770590 22770982 -98486548 + MTB LTR MaLR 1 400 0 4 758 366 263 47 158 chr12 22770982 22771096 -98486434 - MLT1B LTR MaLR -137 253 160 4 758 632 231 16 37 chr12 22771109 22771298 -98486232 + B4A SINE B4 3 187 -105 4 758 247 311 40 0 chr12 22771809 22771883 -98485647 - ID2 SINE ID -6 77 1 4 758 672 219 0 16 chr12 22771896 22772017 -98485513 - PB1D9 SINE Alu 0 120 2 4 758 880 158 7 0 chr12 22772075 22772221 -98485309 + B1_Mus1 SINE Alu 1 147 -1 4 758 497 295 45 6 chr12 22772346 22772503 -98485027 - RSINE1 SINE B4 0 165 3 4 758 470 252 76 19 chr12 22772646 22772804 -98484726 - MTD-int LTR MaLR -1091 167 1 4 758 781 215 194 20 chr12 22772810 22773150 -98484380 - MTD LTR MaLR 0 419 3 4 758 4246 225 69 62 chr12 22773206 22774359 -98483171 + MTD-int LTR MaLR 92 1252 -6 4 758 1649 204 91 3 chr12 22774372 22774735 -98482795 + MTD LTR MaLR 25 419 0 4 758 510 228 186 34 chr12 22775267 22775444 -98482086 - B3 SINE B2 -11 205 2 4 758 213 307 0 0 chr12 22775717 22775792 -98481738 + (TGGA)n Simple_repeat Simple_repeat 3 77 0 4 758 793 132 221 85 chr12 22775833 22775913 -98481617 + URR1A DNA MER1_type 1 112 -114 4 758 1053 82 0 0 chr12 22775913 22776048 -98481482 + B1_Mm SINE Alu 1 135 -12 4 758 294 29 0 0 chr12 22776049 22776084 -98481446 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 758 793 132 221 85 chr12 22776084 22776200 -98481330 + URR1A DNA MER1_type 113 226 0 4 758 299 333 0 0 chr12 22776547 22776622 -98480908 - ID4_ SINE ID 0 83 9 4 758 333 289 51 10 chr12 22776658 22776756 -98480774 - PB1D10 SINE Alu -13 104 3 4 758 387 310 13 40 chr12 22776949 22777100 -98480430 - B1F SINE Alu 0 149 3 4 758 1264 194 167 12 chr12 22777128 22777451 -98480079 - ORR1D1 LTR MaLR -1 373 1 4 758 221 315 53 26 chr12 22777804 22777918 -98479612 - L2c LINE L2 -53 3334 3218 4 758 1998 169 57 26 chr12 22778433 22778822 -98478708 - MTC LTR MaLR -20 401 1 4 758 285 140 0 0 chr12 22778882 22778939 -98478591 + (TGG)n Simple_repeat Simple_repeat 2 58 0 4 758 1024 115 0 39 chr12 22779375 22779529 -98478001 - B1_Mus1 SINE Alu 0 148 1 4 758 217 226 38 0 chr12 22780233 22780286 -98477244 - MIRc SINE MIR -129 139 85 4 758 576 180 204 90 chr12 22780339 22780540 -98476990 + URR1B DNA MER1_type 2 225 0 4 758 1067 220 5 0 chr12 22780577 22780791 -98476739 - B3 SINE B2 0 216 2 4 758 190 192 56 37 chr12 22780951 22781005 -98476525 - MIRc SINE MIR -135 133 79 4 758 1411 127 11 92 chr12 22782403 22782876 -98474654 - RLTR44-int LTR ERVK -1773 1039 794 4 758 1356 165 11 37 chr12 22782909 22783179 -98474351 - RLTR44-int LTR ERVK -2549 263 1 4 758 2157 112 38 17 chr12 22783179 22783578 -98473952 - RLTR44C LTR ERVK 0 452 1 4 758 1500 265 8 38 chr12 22785255 22785288 -98472242 + ORR1D2 LTR MaLR 1 30 -340 4 758 1305 120 81 9 chr12 22785288 22785499 -98472031 - URR1A DNA MER1_type 0 226 1 4 758 1500 265 8 38 chr12 22785499 22785838 -98471692 + ORR1D2 LTR MaLR 31 362 -8 4 758 1687 239 45 12 chr12 22786130 22786533 -98470997 + MTD LTR MaLR 1 416 -3 4 758 21 71 0 0 chr12 22787289 22787331 -98470199 + AT_rich Low_complexity Low_complexity 1 42 0 4 758 186 171 0 0 chr12 22787356 22787397 -98470133 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 4 758 246 303 13 13 chr12 22787886 22787963 -98469567 + ID2 SINE ID 2 78 -5 4 758 750 11 0 0 chr12 22788180 22788267 -98469263 + (CA)n Simple_repeat Simple_repeat 1 87 0 4 758 207 341 56 11 chr12 22788307 22788396 -98469134 - L2c LINE L2 -39 3348 3256 4 758 368 292 217 53 chr12 22788404 22788722 -98468808 - ORR1D2 LTR MaLR 0 370 1 4 758 1017 157 0 0 chr12 22788963 22789110 -98468420 - B1_Mur1 SINE Alu 0 149 3 4 758 288 280 13 39 chr12 22789197 22789275 -98468255 + RSINE1 SINE B4 50 125 -40 4 758 1524 77 0 5 chr12 22789363 22789558 -98467972 + B2_Mm2 SINE B2 1 194 -1 4 758 181 335 92 49 chr12 22789620 22789783 -98467747 - L2c LINE L2 -459 2960 2791 4 758 2270 159 17 44 chr12 22790186 22790595 -98466935 - MTC LTR MaLR -6 415 18 4 758 333 200 0 0 chr12 22790809 22790869 -98466661 + B3 SINE B2 70 129 -87 4 758 234 128 26 0 chr12 22791035 22791074 -98466456 + MLT1C LTR MaLR 149 188 -279 4 758 576 245 0 33 chr12 22791313 22791465 -98466065 - B1_Mm SINE Alu 0 147 1 4 758 1346 50 6 0 chr12 22791649 22791828 -98465702 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 758 1355 226 108 21 chr12 22791973 22792308 -98465222 + MTD LTR MaLR 16 379 -40 4 758 739 181 7 55 chr12 22792327 22792473 -98465057 - B1_Mus1 SINE Alu 0 148 10 4 758 479 296 8 127 chr12 22792332 22792568 -98464962 - ID_B1 SINE B4 -2 222 15 4 758 300 116 0 0 chr12 22792742 22792785 -98464745 + MTC LTR MaLR 92 134 -287 4 758 2509 60 35 3 chr12 22792982 22793297 -98464233 - IAPLTR2b LTR ERVK -2 325 1 4 758 50378 64 19 19 chr12 22793298 22799735 -98457795 - IAPEz-int LTR ERVK -1 6480 1 4 758 2559 51 35 3 chr12 22799737 22800052 -98457478 - IAPLTR2b LTR ERVK -2 325 1 4 758 203 61 0 29 chr12 22800405 22800439 -98457091 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 758 682 301 78 53 chr12 22800442 22800723 -98456807 - B4A SINE B4 0 292 5 4 758 541 252 81 0 chr12 22800851 22800974 -98456556 + ETnERV2-int LTR ERVK 7070 7202 -204 4 758 304 293 138 0 chr12 22801423 22801546 -98455984 + L2b LINE L2 3022 3161 -214 4 758 620 305 9 62 chr12 22801621 22801838 -98455692 + ID_B1 SINE B4 2 208 -16 4 758 324 70 0 0 chr12 22801838 22801881 -98455649 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 758 420 108 108 0 chr12 22801950 22802024 -98455506 + B2_Mm1a SINE B2 103 184 -9 4 758 21 36 0 0 chr12 22802231 22802259 -98455271 + AT_rich Low_complexity Low_complexity 1 28 0 4 758 432 229 32 16 chr12 22802259 22802383 -98455147 - Lx3B LINE L1 0 6973 6848 4 758 1095 68 0 0 chr12 22802906 22803039 -98454491 + B1_Mm SINE Alu 3 135 -12 4 758 792 88 0 0 chr12 22803039 22803153 -98454377 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 4 758 549 0 0 0 chr12 22803153 22803213 -98454317 + (GGGA)n Simple_repeat Simple_repeat 2 62 0 4 758 1059 67 0 0 chr12 22803213 22803361 -98454169 + (GAAA)n Simple_repeat Simple_repeat 1 149 0 4 758 410 248 85 28 chr12 22803994 22804135 -98453395 - B1F SINE Alu 0 149 1 4 758 1207 307 87 116 chr12 22804502 22805216 -98452314 - MER63C DNA AcHobo -5 925 233 4 758 714 186 20 27 chr12 22805475 22805624 -98451906 + B1_Mur1 SINE Alu 1 148 -1 4 758 703 212 92 40 chr12 22805757 22805957 -98451573 + B3 SINE B2 13 216 0 4 758 369 238 0 0 chr12 22805967 22806068 -98451462 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 758 536 206 0 30 chr12 22806084 22806184 -98451346 + B3 SINE B2 3 99 -117 4 758 1016 116 0 20 chr12 22806184 22806334 -98451196 + B1_Mus1 SINE Alu 2 148 0 4 758 366 159 16 0 chr12 22806359 22806422 -98451108 + B3 SINE B2 89 152 -64 4 759 517 207 18 18 chr12 22807306 22807419 -98450111 - PB1D9 SINE Alu -6 114 2 4 759 1062 110 0 20 chr12 22807469 22807618 -98449912 + B1_Mus2 SINE Alu 2 147 0 4 759 226 216 0 89 chr12 22807637 22807693 -98449837 + MER46C DNA MER2_type 95 145 -193 4 759 1510 225 80 8 chr12 22808032 22808418 -98449112 - MTD LTR MaLR -1 418 5 4 759 490 350 38 12 chr12 22808644 22808884 -98448646 - MER46C DNA MER2_type -1 337 92 4 759 829 197 0 14 chr12 22808902 22809046 -98448484 - B1_Mur3 SINE Alu -6 143 2 4 759 371 235 12 0 chr12 22809166 22809247 -98448283 + ID2 SINE ID 2 83 0 4 759 906 155 0 0 chr12 22809310 22809601 -98447929 + (TG)n Simple_repeat Simple_repeat 1 291 0 4 759 25 31 0 0 chr12 22811192 22811224 -98446306 + GC_rich Low_complexity Low_complexity 1 32 0 4 759 209 252 149 3 chr12 22814102 22814176 -98443354 - MIRm SINE MIR -115 161 74 4 759 342 107 0 0 chr12 22814563 22814619 -98442911 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 759 302 258 14 83 chr12 22814638 22814782 -98442748 - B4A SINE B4 -40 125 1 4 759 317 370 15 30 chr12 22816311 22816442 -98441088 - MER3 DNA MER1_type -78 131 3 4 759 337 325 98 13 chr12 22816452 22816605 -98440925 + MER5A1 DNA MER1_type 1 166 0 4 759 232 262 11 56 chr12 22816679 22816768 -98440762 - MER5B DNA MER1_type -62 116 32 4 759 495 251 137 30 chr12 22817186 22817354 -98440176 - B3A SINE B2 -10 188 3 4 759 214 82 0 58 chr12 22817625 22817677 -98439853 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 4 759 1057 84 0 7 chr12 22817687 22817830 -98439700 - B1_Mm SINE Alu -5 142 1 4 759 842 196 173 0 chr12 22817882 22818107 -98439423 + Lx9 LINE L1 7381 7644 0 4 759 759 245 66 24 chr12 22818443 22818656 -98438874 - ID_B1 SINE B4 -2 222 1 4 759 271 281 133 11 chr12 22818968 22819058 -98438472 + Lx8 LINE L1 6978 7078 -395 4 759 428 139 13 0 chr12 22819169 22819248 -98438282 + GA-rich Low_complexity Low_complexity 3 82 0 4 759 246 262 121 16 chr12 22819267 22819391 -98438139 + Lx8 LINE L1 7335 7471 -2 4 759 198 100 0 104 chr12 22819463 22819530 -98438000 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 4 759 295 347 30 59 chr12 22819569 22819805 -98437725 + MT2A LTR ERVL 74 302 -231 4 759 1050 141 23 6 chr12 22820386 22820557 -98436973 - RMER17D LTR ERVK -2 887 714 4 759 1299 258 38 3 chr12 22820622 22820937 -98436593 + MTD LTR MaLR 91 416 -3 4 759 375 294 41 25 chr12 22822011 22822133 -98435397 - ID_B1 SINE B4 -46 178 55 4 759 195 42 0 0 chr12 22822574 22822598 -98434932 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 4 759 379 243 36 45 chr12 22822822 22822934 -98434596 + B3 SINE B2 8 118 -98 5 759 456 51 0 0 chr12 22822965 22823024 -98434506 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 759 200 360 44 11 chr12 22823064 22823154 -98434376 - L2c LINE L2 -39 3348 3256 5 759 408 293 116 98 chr12 22823162 22823486 -98434044 - ORR1E LTR MaLR 0 370 1 5 759 981 163 0 0 chr12 22823721 22823868 -98433662 - B1_Mur1 SINE Alu 0 149 3 5 759 288 290 94 31 chr12 22823956 22824052 -98433478 + RSINE1 SINE B4 51 152 -13 5 759 1401 104 0 5 chr12 22824129 22824322 -98433208 + B2_Mm2 SINE B2 1 192 -3 5 759 2430 138 19 45 chr12 22824951 22825377 -98432153 - MTC LTR MaLR -6 415 1 5 759 564 288 68 0 chr12 22826389 22826521 -98431009 - RSINE1 SINE B4 -4 161 21 5 759 248 266 74 25 chr12 22826806 22826880 -98430650 + B4A SINE B4 3 80 -212 5 759 406 89 0 0 chr12 22826880 22826936 -98430594 + RMER6D LTR ERVK 1 56 -664 5 759 373 150 33 0 chr12 22827189 22827249 -98430281 + B3A SINE B2 70 131 -67 5 759 556 272 0 13 chr12 22827689 22827838 -98429692 - B1_Mm SINE Alu 0 147 1 5 759 287 96 19 0 chr12 22828016 22828068 -98429462 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 5 759 8160 61 4 2 chr12 22828082 22829230 -98428300 - L1Md_F2 LINE L1 0 6582 5468 5 759 1452 210 91 94 chr12 22829293 22829651 -98427879 + MTD LTR MaLR 16 376 -43 5 759 683 190 41 34 chr12 22829651 22829798 -98427732 - B1_Mus1 SINE Alu 0 148 1 5 759 1452 210 91 94 chr12 22829798 22829844 -98427686 + MTD LTR MaLR 377 419 0 5 759 292 79 0 0 chr12 22830065 22830103 -98427427 + MTC LTR MaLR 92 129 -292 5 759 537 38 12 24 chr12 22830650 22830732 -98426798 + (TG)n Simple_repeat Simple_repeat 1 81 0 5 759 637 250 117 27 chr12 22830776 22830998 -98426532 - B4A SINE B4 -46 246 5 5 759 521 260 81 0 chr12 22831126 22831249 -98426281 + ETnERV2-int LTR ERVK 7070 7202 -204 5 759 296 321 108 31 chr12 22831681 22831903 -98425627 + L2b LINE L2 3004 3242 -184 5 759 611 253 52 104 chr12 22831908 22832120 -98425410 + ID_B1 SINE B4 2 202 -22 5 759 250 181 153 0 chr12 22832352 22832424 -98425106 - MER5A1 DNA MER1_type -71 95 13 5 759 1102 119 6 0 chr12 22832919 22833078 -98424452 + B2_Mm1a SINE B2 1 160 -33 5 759 576 0 0 0 chr12 22833078 22833142 -98424388 + (TAAA)n Simple_repeat Simple_repeat 3 66 0 5 759 390 231 41 8 chr12 22833384 22833506 -98424024 - Lx3B LINE L1 0 6973 6848 5 759 1115 76 7 0 chr12 22834027 22834171 -98423359 + B1_Mm SINE Alu 3 147 0 5 759 1116 133 0 0 chr12 22834201 22834381 -98423149 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 759 180 0 0 0 chr12 22834381 22834401 -98423129 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 759 417 241 85 28 chr12 22835032 22835173 -98422357 - B1F SINE Alu 0 149 1 5 759 524 304 49 9 chr12 22835539 22835765 -98421765 - MER63D DNA AcHobo -5 1056 822 5 759 456 115 58 0 chr12 22836081 22836168 -98421362 - RMER17D LTR ERVK -797 92 1 5 759 554 281 156 9 chr12 22836733 22837189 -98420341 - L1_Mur3 LINE L1 -4044 1836 1314 5 759 2878 9 3 0 chr12 22837379 22837700 -98419830 - RLTRETN_Mm LTR ERVK 0 322 1 5 759 42222 23 3 6 chr12 22837700 22842554 -98414976 - MMETn-int LTR ERVK 0 4844 1 5 759 2865 9 3 0 chr12 22842554 22842875 -98414655 - RLTRETN_Mm LTR ERVK 0 322 1 5 759 444 236 28 11 chr12 22843018 22843194 -98414336 - L1_Mur3 LINE L1 -6646 1082 904 5 759 329 365 52 16 chr12 22845294 22845486 -98412044 + MTD LTR MaLR 15 213 -206 5 759 1805 164 73 21 chr12 22845486 22845792 -98411738 - RLTR9D LTR ERVK -2 401 75 5 759 3340 28 10 5 chr12 22845792 22846186 -98411344 + MTA_Mm LTR MaLR 1 396 0 5 759 1805 164 73 21 chr12 22846186 22846260 -98411270 - RLTR9D LTR ERVK -329 74 1 5 759 266 347 94 18 chr12 22846284 22846454 -98411076 + MTD LTR MaLR 221 403 -16 5 759 327 85 0 0 chr12 22846466 22846513 -98411017 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 759 444 353 34 13 chr12 22846532 22846767 -98410763 + MTD-int LTR MaLR 24 263 -1107 5 759 234 81 0 0 chr12 22846767 22846804 -98410726 + (A)n Simple_repeat Simple_repeat 1 37 0 5 759 886 129 0 39 chr12 22846941 22847094 -98410436 - B1_Mus2 SINE Alu 0 147 1 5 759 5979 234 16 8 chr12 22847101 22848508 -98409022 - Lx4B LINE L1 -4 7054 5637 5 759 1202 324 36 60 chr12 22848518 22849236 -98408294 + MTD-int LTR MaLR 562 1262 -108 5 759 205 205 0 0 chr12 22849295 22849334 -98408196 + T-rich Low_complexity Low_complexity 1 39 0 5 759 264 250 25 41 chr12 22849343 22849464 -98408066 - Lx4B LINE L1 -4 7054 6936 5 759 8168 192 98 28 chr12 22849882 22850031 -98407499 + MurSatRep1 Unknown Unknown 2 175 -1962 5 759 331 323 65 0 chr12 22850031 22850155 -98407375 - B1_Mur2 SINE Alu -17 132 1 5 759 8168 192 98 28 chr12 22850155 22850999 -98406531 + MurSatRep1 Unknown Unknown 176 1125 -1012 5 759 1358 93 6 0 chr12 22850999 22851182 -98406348 - B2_Mm1a SINE B2 -8 185 2 5 759 8168 192 98 28 chr12 22851182 22852181 -98405349 + MurSatRep1 Unknown Unknown 1126 2134 -3 5 759 310 316 36 41 chr12 22852222 22852443 -98405087 + MurSatRep1 Unknown Unknown 1834 2053 -84 5 759 458 265 22 22 chr12 22852378 22852517 -98405013 + MMSAT4 Satellite Satellite 30 168 0 5 759 577 313 51 33 chr12 22852471 22852858 -98404672 + MurSatRep1 Unknown Unknown 1747 2136 -1 5 759 457 302 0 0 chr12 22852798 22853021 -98404509 + MMSAT4 Satellite Satellite 1 223 0 5 759 523 304 53 62 chr12 22852975 22854097 -98403433 + MurSatRep1 Unknown Unknown 1691 2137 0 5 759 2924 92 2 5 chr12 22854097 22854501 -98403029 + L1_Mus1 LINE L1 6164 6566 -1 5 759 433 301 76 78 chr12 22854501 22854671 -98402859 + MurSatRep1 Unknown Unknown 1751 2006 -131 5 759 344 274 29 22 chr12 22854671 22854809 -98402721 + MMSAT4 Satellite Satellite 30 168 0 5 759 433 301 76 78 chr12 22854809 22854893 -98402637 + MurSatRep1 Unknown Unknown 2007 2136 -1 5 759 263 277 26 26 chr12 22854838 22854953 -98402577 + MMSAT4 Satellite Satellite 31 145 -23 5 759 309 267 0 11 chr12 22855103 22855194 -98402336 + ORR1C2 LTR MaLR 293 382 -2 5 759 830 154 28 7 chr12 22855478 22855622 -98401908 + B1_Mur4 SINE Alu 2 148 -2 5 759 2234 245 70 26 chr12 22855771 22856766 -98400764 - L1_Mur2 LINE L1 -3753 2127 1086 5 759 387 176 33 0 chr12 22856750 22856841 -98400689 - L1_Mur2 LINE L1 -6507 1221 1128 5 759 690 24 0 0 chr12 22857448 22857532 -98399998 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 759 267 31 0 0 chr12 22857533 22857565 -98399965 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 759 22 35 0 0 chr12 22857586 22857615 -98399915 + AT_rich Low_complexity Low_complexity 1 29 0 5 759 615 223 52 9 chr12 22857631 22857800 -98399730 - Lx2B LINE L1 -200 6797 6625 5 759 186 103 0 0 chr12 22857873 22857902 -98399628 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 5 759 310 190 8 8 chr12 22857943 22858065 -98399465 + (TA)n Simple_repeat Simple_repeat 1 122 0 5 759 396 59 0 0 chr12 22858071 22858122 -98399408 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 759 629 291 40 84 chr12 22858304 22858514 -98399016 + RLTR11A2 LTR ERVK 134 334 -193 5 759 1166 75 0 0 chr12 22858514 22858661 -98398869 + B1_Mm SINE Alu 1 147 0 5 759 629 291 40 84 chr12 22858661 22858773 -98398757 + RLTR11A2 LTR ERVK 335 442 -85 5 759 203 104 94 17 chr12 22858778 22858895 -98398635 + (TTA)n Simple_repeat Simple_repeat 2 127 0 5 759 276 53 0 0 chr12 22858962 22859000 -98398530 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 759 470 168 25 25 chr12 22859228 22859387 -98398143 + (CATA)n Simple_repeat Simple_repeat 4 162 0 5 759 493 201 31 4 chr12 22859420 22859682 -98397848 + (CA)n Simple_repeat Simple_repeat 1 269 0 5 759 2883 44 0 12 chr12 22860149 22860494 -98397036 - IAPLTR4 LTR ERVK -4 341 1 5 759 4353 214 10 12 chr12 22860494 22861371 -98396159 - IAPLTR3-int LTR ERVK -20 6801 5927 5 759 3458 86 0 7 chr12 22861354 22861811 -98395719 - MMERVK10C-int LTR ERVK -1367 6214 5761 5 759 3336 97 7 15 chr12 22861799 22862258 -98395272 - MMERVK10C-int LTR ERVK -1936 5645 5191 5 759 797 88 28 49 chr12 22862508 22862652 -98394878 - MMERVK10C-int LTR ERVK -2911 4670 4530 5 759 503 186 12 35 chr12 22862664 22862789 -98394741 - MMERVK10C-int LTR ERVK -2380 2464 2357 5 759 3410 139 154 2 chr12 22862794 22863406 -98394124 - ETnERV2-int LTR ERVK -3135 4271 3567 5 759 680 219 379 30 chr12 22863432 22863654 -98393876 - ETnERV2-int LTR ERVK -4653 2753 2454 5 759 450 221 88 0 chr12 22863670 22863783 -98393747 - RLTR45-int LTR ERVK -5077 1060 938 5 759 261 250 113 52 chr12 22863770 22863867 -98393663 - RLTR45-int LTR ERVK -5449 688 586 5 759 647 113 8 117 chr12 22863907 22864093 -98393437 - RLTR45-int LTR ERVK -4937 2307 2175 5 759 373 216 39 58 chr12 22864096 22864199 -98393331 - RLTR45-int LTR ERVK -5055 351 251 5 759 753 213 43 82 chr12 22864297 22864553 -98392977 - IAPLTR3-int LTR ERVK -5755 1066 821 5 759 668 163 8 24 chr12 22864552 22864678 -98392852 - IAPLTR3-int LTR ERVK -6686 135 12 5 759 2533 62 62 0 chr12 22864687 22864721 -98392809 - IAPLTR4 LTR ERVK 0 345 312 5 759 395 19 0 19 chr12 22864721 22864774 -98392756 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 759 2533 62 62 0 chr12 22864774 22865064 -98392466 - IAPLTR4 LTR ERVK -34 311 2 5 759 429 209 258 23 chr12 22865089 22865350 -98392180 + L1MC1 LINE L1 6012 6333 0 5 759 2168 116 48 0 chr12 22865360 22865697 -98391833 + L1_Mus3 LINE L1 6279 6631 -7 5 759 676 242 26 0 chr12 22865707 22865860 -98391670 + B3A SINE B2 1 157 -41 5 759 263 262 112 26 chr12 22866263 22866452 -98391078 + MIR SINE MIR 3 202 -66 5 759 229 225 11 11 chr12 22867055 22867145 -98390385 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 759 311 155 0 0 chr12 22868558 22868616 -98388914 + L1Md_A LINE L1 670 727 -5997 5 759 12597 55 1 0 chr12 22868614 22870168 -98387362 + L1Md_F3 LINE L1 4032 5586 -297 5 759 8362 40 1 3 chr12 22870168 22871168 -98386362 + L1Md_F3 LINE L1 5587 6584 0 5 759 256 240 147 0 chr12 22873314 22873389 -98384141 + PB1D10 SINE Alu 12 97 -20 5 759 904 172 0 0 chr12 22873395 22873540 -98383990 + B1_Mur4 SINE Alu 1 145 -5 5 759 811 229 20 25 chr12 22873604 22873801 -98383729 + ID_B1 SINE B4 21 216 -8 5 759 614 273 14 72 chr12 22874709 22874918 -98382612 + B4A SINE B4 24 220 -72 5 759 446 302 65 16 chr12 22874935 22875120 -98382410 + B3A SINE B2 2 195 -3 5 759 956 131 0 0 chr12 22875141 22875278 -98382252 + B1_Mur4 SINE Alu 1 137 -13 5 759 2304 96 0 58 chr12 22875409 22875752 -98381778 + ORR1A2 LTR MaLR 1 323 -4 5 759 225 159 0 0 chr12 22875763 22875807 -98381723 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 759 1413 58 8 10 chr12 22875810 22876226 -98381304 + (GGGAA)n Simple_repeat Simple_repeat 1 414 0 5 759 299 217 263 30 chr12 22876914 22877047 -98380483 - RSINE1 SINE B4 -1 164 1 5 759 249 303 53 8 chr12 22877516 22877649 -98379881 - MER33 DNA MER1_type 0 324 186 5 759 1007 191 32 5 chr12 22877693 22877909 -98379621 - URR1B DNA MER1_type -3 222 1 5 759 270 222 0 0 chr12 22878122 22878185 -98379345 + GA-rich Low_complexity Low_complexity 1 63 0 5 759 654 13 0 0 chr12 22880512 22880587 -98376943 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 759 247 255 0 18 chr12 22881547 22881603 -98375927 + CT-rich Low_complexity Low_complexity 2 56 0 5 759 1108 63 29 0 chr12 22881604 22881779 -98375751 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 759 331 254 9 35 chr12 22882483 22882495 -98375035 - PB1D9 SINE Alu 0 120 111 6 759 302 0 26 0 chr12 22882495 22882533 -98374997 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 759 337 254 9 34 chr12 22882533 22882636 -98374894 - B1_Mur4 SINE Alu -10 110 9 6 759 526 243 47 13 chr12 22882822 22882972 -98374558 + B3 SINE B2 58 212 -4 6 759 903 56 8 0 chr12 22883049 22883174 -98374356 + B1_Mm SINE Alu 22 147 0 6 759 275 136 0 17 chr12 22883176 22883236 -98374294 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 6 759 505 241 60 0 chr12 22883254 22883387 -98374143 + ID_B1 SINE B4 82 222 -2 6 759 227 73 49 0 chr12 22883599 22883640 -98373890 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 6 759 560 187 47 31 chr12 22883689 22883816 -98373714 - B1_Mur3 SINE Alu -12 137 9 6 759 679 192 8 0 chr12 22883848 22883973 -98373557 - ID_B1 SINE B4 -7 217 92 6 759 297 0 0 0 chr12 22885938 22885971 -98371559 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 759 663 232 55 30 chr12 22886022 22886222 -98371308 + B4A SINE B4 2 206 -86 6 759 705 225 0 0 chr12 22886450 22886579 -98370951 + RSINE1 SINE B4 3 131 -34 6 759 241 231 0 0 chr12 22887254 22887306 -98370224 + G-rich Low_complexity Low_complexity 3 54 0 6 759 1843 135 10 10 chr12 22887525 22887839 -98369691 - MTC LTR MaLR 0 421 108 6 759 595 172 85 50 chr12 22887844 22887985 -98369545 + B1_Mur3 SINE Alu 4 149 0 6 759 318 169 0 0 chr12 22887989 22888054 -98369476 + GA-rich Low_complexity Low_complexity 4 68 0 6 759 702 53 0 0 chr12 22889351 22889446 -98368084 + (TC)n Simple_repeat Simple_repeat 2 96 0 6 759 673 60 0 0 chr12 22889446 22889530 -98368000 - B2_Mm2 SINE B2 -109 86 3 6 759 358 284 0 0 chr12 22889603 22889691 -98367839 + PB1D10 SINE Alu 30 117 0 6 759 439 212 12 0 chr12 22889696 22889776 -98367754 + RSINE1 SINE B4 53 133 -32 6 759 458 219 66 66 chr12 22889761 22889898 -98367632 + B1F1 SINE Alu 13 149 0 6 759 618 249 14 40 chr12 22889929 22890120 -98367410 + B3 SINE B2 15 195 0 6 759 778 234 29 18 chr12 22890681 22890851 -98366679 - B3A SINE B2 -24 174 3 6 759 244 329 101 12 chr12 22890879 22891048 -98366482 + L2c LINE L2 2981 3164 -223 6 759 347 303 28 0 chr12 22891235 22891344 -98366186 + PB1D7 SINE Alu 3 114 -6 6 759 319 333 8 41 chr12 22891351 22891473 -98366057 - MIRb SINE MIR -149 119 2 6 759 200 301 35 63 chr12 22892314 22892488 -98365042 + (CAGGA)n Simple_repeat Simple_repeat 2 170 0 6 759 234 328 54 69 chr12 22892568 22892661 -98364869 + L1MD2 LINE L1 6084 6172 -187 6 759 443 18 18 0 chr12 22892661 22892717 -98364813 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 759 234 328 54 69 chr12 22892717 22892826 -98364704 + L1MD2 LINE L1 6173 6282 -77 6 759 783 291 43 32 chr12 22892895 22893175 -98364355 + B4A SINE B4 2 284 -8 6 759 300 116 0 0 chr12 22893467 22893510 -98364020 - URR1B DNA MER1_type 0 225 183 6 759 515 118 0 12 chr12 22894083 22894169 -98363361 + (GGGGA)n Simple_repeat Simple_repeat 2 86 0 6 759 712 120 70 23 chr12 22894501 22894629 -98362901 + B1_Mus1 SINE Alu 3 136 -12 6 759 1134 49 6 12 chr12 22894629 22894793 -98362737 + (TAAA)n Simple_repeat Simple_repeat 2 164 0 6 759 268 276 117 105 chr12 22894846 22895008 -98362522 + MLT1F2 LTR MaLR 141 304 -265 6 759 773 234 88 5 chr12 22895267 22895460 -98362070 + B3 SINE B2 3 211 -5 6 759 504 197 157 33 chr12 22895483 22895604 -98361926 + B1_Mur2 SINE Alu 1 136 -13 6 759 1584 12 0 0 chr12 22895611 22895865 -98361665 + (GGGAGA)n Simple_repeat Simple_repeat 1 254 0 6 759 672 272 14 52 chr12 22897794 22898007 -98359523 + ID_B1 SINE B4 2 206 -18 6 759 249 33 0 0 chr12 22898015 22898045 -98359485 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 759 1063 101 0 0 chr12 22898065 22898203 -98359327 + B1_Mus1 SINE Alu 1 138 -10 6 759 645 14 0 0 chr12 22898280 22898354 -98359176 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 759 423 354 51 9 chr12 22898406 22898620 -98358910 - L1MD LINE L1 -540 5819 5597 6 759 418 274 177 0 chr12 22898670 22898783 -98358747 - RSINE1 SINE B4 -29 136 4 6 759 4500 126 18 75 chr12 22898790 22899486 -98358044 + RMER17D2 LTR ERVK 1 641 -168 6 759 267 31 0 0 chr12 22899486 22899518 -98358012 + (CCA)n Simple_repeat Simple_repeat 2 33 0 6 759 4500 126 18 75 chr12 22899518 22899679 -98357851 + RMER17D2 LTR ERVK 642 808 -1 6 759 226 276 0 164 chr12 22899748 22899852 -98357678 - RMER21B LTR ERV1 -285 557 471 6 759 941 215 129 41 chr12 22899770 22900104 -98357426 - MT2A LTR ERVL -48 553 92 6 759 375 243 27 0 chr12 22900156 22900230 -98357300 - RSINE1 SINE B4 -89 76 1 6 759 363 271 61 15 chr12 22900696 22900827 -98356703 - MER33 DNA MER1_type 0 324 188 6 759 1116 171 32 5 chr12 22900877 22901095 -98356435 - URR1B DNA MER1_type -1 224 1 6 759 204 167 0 0 chr12 22901309 22901357 -98356173 + GA-rich Low_complexity Low_complexity 1 48 0 6 759 798 175 11 6 chr12 22903088 22903266 -98354264 + CT-rich Low_complexity Low_complexity 2 180 0 6 759 328 55 36 0 chr12 22903268 22903323 -98354207 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 6 759 375 229 65 28 chr12 22904046 22904154 -98353376 - PB1D9 SINE Alu 0 120 9 6 759 211 316 101 62 chr12 22904061 22904240 -98353290 - ID_B1 SINE B4 -34 190 5 6 759 743 246 42 37 chr12 22904321 22904526 -98353004 + B3 SINE B2 1 214 -2 6 759 805 51 0 0 chr12 22904608 22904706 -98352824 - B1_Mus2 SINE Alu -9 138 41 6 759 574 240 57 19 chr12 22904710 22904867 -98352663 + ID_B1 SINE B4 60 222 -2 6 759 255 31 0 0 chr12 22905100 22905132 -98352398 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 759 575 234 39 46 chr12 22905143 22905273 -98352257 - B1_Mur3 SINE Alu -17 132 4 6 759 636 221 15 8 chr12 22905297 22905429 -98352101 - ID_B1 SINE B4 -4 220 88 6 759 1286 156 9 18 chr12 22906925 22907153 -98350377 + URR1A DNA MER1_type 1 226 0 6 759 216 0 0 0 chr12 22907890 22907914 -98349616 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 6 759 688 242 55 30 chr12 22907965 22908165 -98349365 + B4A SINE B4 2 206 -86 6 759 718 248 0 0 chr12 22908393 22908522 -98349008 + RSINE1 SINE B4 3 131 -34 6 759 231 329 0 26 chr12 22908655 22908733 -98348797 - MER2 DNA MER2_type -263 82 7 6 759 226 200 0 52 chr12 22909170 22909228 -98348302 + G-rich Low_complexity Low_complexity 5 59 0 6 759 1993 142 10 10 chr12 22909460 22909774 -98347756 - MTC LTR MaLR 0 421 108 6 759 699 200 56 21 chr12 22909777 22909920 -98347610 + B1_Mur3 SINE Alu 2 149 0 6 759 273 167 0 0 chr12 22909924 22909978 -98347552 + GA-rich Low_complexity Low_complexity 4 57 0 6 759 495 172 20 61 chr12 22911388 22911402 -98346128 - B3A SINE B2 -101 97 89 6 759 711 0 0 0 chr12 22911402 22911481 -98346049 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 759 650 71 0 0 chr12 22911481 22911565 -98345965 - B2_Mm2 SINE B2 -109 86 3 6 759 389 244 0 0 chr12 22911640 22911726 -98345804 + PB1D10 SINE Alu 32 117 0 6 759 431 203 0 0 chr12 22911736 22911805 -98345725 + RSINE1 SINE B4 59 127 -38 6 759 497 223 65 16 chr12 22911810 22911933 -98345597 + B1F1 SINE Alu 21 149 0 6 759 633 230 16 42 chr12 22911964 22912155 -98345375 + B3 SINE B2 15 195 0 6 759 217 360 123 5 chr12 22912457 22912669 -98344861 + L2c LINE L2 2928 3164 -223 6 759 288 311 37 9 chr12 22912849 22912956 -98344574 + PB1D7 SINE Alu 5 114 -6 6 759 335 325 8 41 chr12 22912963 22913085 -98344445 - MIRb SINE MIR -149 119 2 6 759 320 318 105 58 chr12 22913961 22914218 -98343312 + L1MD2 LINE L1 6084 6352 -7 6 759 875 319 39 28 chr12 22914238 22914522 -98343008 + B4A SINE B4 6 292 0 6 759 958 137 165 21 chr12 22914799 22914993 -98342537 - URR1B DNA MER1_type 0 225 4 6 759 190 333 39 26 chr12 22915569 22915646 -98341884 + MIRc SINE MIR 86 163 -105 6 759 228 340 98 20 chr12 22915647 22915800 -98341730 - RMER15 LTR ERVL -6 569 405 6 759 242 269 0 29 chr12 22916072 22916141 -98341389 - MT2A LTR ERVL -458 75 9 6 759 819 249 122 40 chr12 22916639 22916939 -98340591 - MTE2b LTR MaLR 0 359 35 6 759 818 201 164 0 chr12 22916939 22917128 -98340402 + URR1A DNA MER1_type 1 220 -6 6 759 668 92 8 25 chr12 22917986 22918108 -98339422 + (GGGGA)n Simple_repeat Simple_repeat 2 121 0 6 759 741 213 28 0 chr12 22918448 22918589 -98338941 + B1_Mus1 SINE Alu 3 147 -1 6 759 365 109 0 15 chr12 22918589 22918654 -98338876 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 6 759 250 309 94 31 chr12 22918714 22918841 -98338689 + MLT1F2 LTR MaLR 142 276 -284 6 759 844 219 83 0 chr12 22919135 22919327 -98338203 + B3 SINE B2 3 210 -6 6 759 405 231 157 33 chr12 22919350 22919471 -98338059 + B1_Mur2 SINE Alu 1 136 -13 6 759 848 86 21 7 chr12 22919477 22919618 -98337912 + (GA)n Simple_repeat Simple_repeat 2 144 0 6 759 297 167 0 0 chr12 22919775 22919853 -98337677 + CT-rich Low_complexity Low_complexity 2 79 0 6 759 282 106 0 0 chr12 22919853 22919900 -98337630 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 759 4855 55 3 2 chr12 22921820 22922406 -98335124 + LTRIS_Mus LTR ERV1 1 587 0 6 759 721 274 14 60 chr12 22922833 22923050 -98334480 + ID_B1 SINE B4 3 209 -15 6 759 186 43 0 0 chr12 22923055 22923078 -98334452 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 759 1069 109 0 0 chr12 22923101 22923239 -98334291 + B1_Mus1 SINE Alu 1 138 -10 7 759 645 49 0 0 chr12 22923319 22923400 -98334130 + (TC)n Simple_repeat Simple_repeat 1 81 0 7 759 368 362 77 0 chr12 22923446 22923653 -98333877 - L1MD LINE L1 -540 5819 5597 7 759 21 26 0 26 chr12 22923663 22923682 -98333848 + AT_rich Low_complexity Low_complexity 1 19 0 7 759 1172 75 0 0 chr12 22923682 22923829 -98333701 - B1_Mm SINE Alu 0 147 1 7 759 21 26 0 26 chr12 22923829 22923848 -98333682 + AT_rich Low_complexity Low_complexity 1 19 0 7 759 380 301 177 0 chr12 22923873 22923986 -98333544 - RSINE1 SINE B4 -29 136 4 7 759 3639 156 27 33 chr12 22923993 22924341 -98333189 + RMER17D2 LTR ERVK 1 358 -451 7 759 753 43 0 0 chr12 22924341 22924434 -98333096 + (TCCCC)n Simple_repeat Simple_repeat 4 96 0 7 759 3639 156 27 33 chr12 22924434 22924788 -98332742 + RMER17D2 LTR ERVK 359 699 -110 7 759 574 238 63 28 chr12 22924742 22924912 -98332618 - MT2A LTR ERVL -237 364 92 7 759 588 175 97 0 chr12 22924913 22925027 -98332503 - MT2A LTR ERVL -403 130 6 7 759 537 250 26 0 chr12 22925028 22925180 -98332350 - L1MD LINE L1 -670 5572 5417 7 759 777 257 16 21 chr12 22925194 22925364 -98332166 + B3A SINE B2 1 171 -27 7 759 840 59 0 0 chr12 22925364 22925483 -98332047 + (CA)n Simple_repeat Simple_repeat 2 120 0 7 759 777 257 16 21 chr12 22925483 22925503 -98332027 + B3A SINE B2 172 190 -8 7 759 589 244 85 69 chr12 22925554 22925743 -98331787 - B3 SINE B2 -23 193 2 7 759 387 60 0 0 chr12 22925758 22925808 -98331722 + (TTTTC)n Simple_repeat Simple_repeat 4 53 0 7 759 1004 123 0 7 chr12 22925817 22925964 -98331566 - B1_Mus1 SINE Alu -1 147 2 7 759 298 260 9 96 chr12 22926039 22926154 -98331376 - RLTR25A LTR ERVK -476 627 523 7 759 802 130 9 49 chr12 22926054 22926208 -98331322 - B1_Mus1 SINE Alu 0 150 5 7 759 890 233 38 34 chr12 22926640 22926849 -98330681 - MTD LTR MaLR -14 405 196 7 759 435 38 0 0 chr12 22926884 22926937 -98330593 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 7 759 770 254 30 0 chr12 22926947 22927116 -98330414 - B3 SINE B2 -42 174 1 7 759 734 216 108 22 chr12 22927126 22927311 -98330219 - MTD LTR MaLR -218 201 1 7 759 448 261 139 14 chr12 22927934 22928078 -98329452 + RSINE1 SINE B4 2 163 -2 7 759 734 249 101 66 chr12 22928221 22928384 -98329146 - RMER10A LTR ERVL 0 442 268 7 759 1131 124 0 0 chr12 22928384 22928561 -98328969 + (GAA)n Simple_repeat Simple_repeat 3 179 0 7 759 734 249 101 66 chr12 22928561 22928762 -98328768 - RMER10A LTR ERVL -175 267 66 7 759 284 254 78 56 chr12 22929464 22929537 -98327993 + MLT1N2 LTR MaLR 413 494 -68 7 759 330 26 0 0 chr12 22929537 22929576 -98327954 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 759 284 254 78 56 chr12 22929576 22929644 -98327886 + MLT1N2 LTR MaLR 495 557 -5 7 759 213 286 54 0 chr12 22930037 22930093 -98327437 - MIRm SINE MIR -121 155 97 7 759 2234 98 9 3 chr12 22930192 22930511 -98327019 + RLTR1C LTR ERV1 1 321 -182 7 759 3045 26 6 0 chr12 22930511 22930855 -98326675 + ORR1A0 LTR MaLR 1 346 0 7 759 740 77 0 0 chr12 22930855 22930959 -98326571 + ORR1A0-int LTR MaLR 1 104 -1688 7 759 616 213 199 47 chr12 22931000 22931236 -98326294 + RLTR10A LTR ERVK 140 411 0 7 759 12878 85 16 15 chr12 22931236 22933170 -98324360 + ORR1A0-int LTR MaLR 89 1963 0 7 759 3128 20 0 0 chr12 22933170 22933516 -98324014 + ORR1A0 LTR MaLR 1 346 0 7 759 1093 183 16 0 chr12 22933516 22933702 -98323828 + RLTR1D LTR ERV1 417 605 0 7 759 959 274 13 17 chr12 22934083 22934313 -98323217 - MTEa LTR MaLR -150 229 1 7 759 365 266 214 14 chr12 22934448 22934530 -98323000 + ID_B1 SINE B4 51 149 -75 7 759 982 138 7 0 chr12 22934530 22934675 -98322855 - B1_Mus2 SINE Alu -1 146 1 7 759 365 266 214 14 chr12 22934675 22934737 -98322793 + ID_B1 SINE B4 150 224 0 7 759 411 278 53 140 chr12 22934815 22934943 -98322587 - MLT1B LTR MaLR -9 381 254 7 759 2652 81 39 10 chr12 22934943 22935332 -98322198 + MTB LTR MaLR 1 400 0 7 759 411 278 53 140 chr12 22935332 22935446 -98322084 - MLT1B LTR MaLR -137 253 160 7 759 588 263 104 36 chr12 22935471 22935692 -98321838 + B4A SINE B4 3 238 -54 7 759 798 11 0 0 chr12 22936181 22936272 -98321258 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 7 759 1088 59 13 0 chr12 22936276 22936428 -98321102 + (TCTA)n Simple_repeat Simple_repeat 3 156 0 7 759 243 350 68 0 chr12 22936446 22936475 -98321055 - ID_B1 SINE B4 -114 110 1 7 759 273 324 40 0 chr12 22936475 22936549 -98320981 - ID4_ SINE ID -6 77 1 7 759 894 201 0 0 chr12 22936564 22936708 -98320822 - B1_Mur1 SINE Alu -5 144 1 7 759 825 158 7 0 chr12 22936755 22936901 -98320629 + B1_Mus1 SINE Alu 1 147 -1 7 759 874 213 18 0 chr12 22937292 22937456 -98320074 - B3 SINE B2 -11 205 39 7 759 207 0 0 0 chr12 22937456 22937479 -98320051 + (A)n Simple_repeat Simple_repeat 1 23 0 7 760 241 233 0 16 chr12 22937782 22937843 -98319687 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 7 760 683 160 32 157 chr12 22937885 22937967 -98319563 + URR1B DNA MER1_type 3 100 -125 7 760 861 106 13 84 chr12 22937967 22938121 -98319409 + B1_Mm SINE Alu 5 147 0 7 760 683 120 11 207 chr12 22938121 22938248 -98319282 + URR1B DNA MER1_type 101 210 -15 7 760 226 353 0 0 chr12 22938609 22938677 -98318853 - tRNA-Ala-GCA tRNA tRNA -7 68 1 7 760 358 287 0 41 chr12 22938706 22938804 -98318726 - PB1D10 SINE Alu -11 106 13 7 760 467 288 13 40 chr12 22939003 22939155 -98318375 - B1F SINE Alu 0 149 2 7 760 1290 207 168 6 chr12 22939182 22939503 -98318027 - ORR1D1 LTR MaLR -1 373 1 7 760 249 291 74 34 chr12 22939856 22940014 -98317516 - L2c LINE L2 -53 3334 3183 7 760 1821 158 68 30 chr12 22940519 22940858 -98316672 - MTC LTR MaLR -33 388 37 7 760 2524 67 256 46 chr12 22940857 22941310 -98316220 - RLTR6_Mm LTR ERV1 -70 584 37 7 760 228 228 194 65 chr12 22941312 22941420 -98316110 - RLTR6_Mm LTR ERV1 -532 122 1 7 760 57003 16 13 1 chr12 22941420 22949068 -98308462 - RLTR6-int LTR ERV1 0 7778 1 7 760 2670 76 228 27 chr12 22949068 22949542 -98307988 - RLTR6_Mm LTR ERV1 -49 605 37 7 760 226 228 194 65 chr12 22949544 22949652 -98307878 - RLTR6_Mm LTR ERV1 -532 122 1 7 760 273 140 0 0 chr12 22949752 22949809 -98307721 + (TGG)n Simple_repeat Simple_repeat 2 58 0 7 760 1159 68 0 39 chr12 22950249 22950403 -98307127 - B1_Mus1 SINE Alu 0 148 1 7 760 733 163 198 89 chr12 22951213 22951415 -98306115 + URR1B DNA MER1_type 2 225 0 7 760 998 199 44 0 chr12 22951453 22951659 -98305871 - B3 SINE B2 0 216 2 7 760 225 315 0 61 chr12 22952606 22952704 -98304826 + MLT1K LTR MaLR 504 595 0 7 760 1418 274 13 35 chr12 22954937 22954970 -98302560 + ORR1D2 LTR MaLR 1 30 -340 7 760 1081 168 76 9 chr12 22954970 22955181 -98302349 - URR1B DNA MER1_type 0 225 1 7 760 1418 274 13 35 chr12 22955181 22955521 -98302009 + ORR1D2 LTR MaLR 31 366 -4 7 760 258 345 35 0 chr12 22955694 22955810 -98301720 - RMER15 LTR ERVL -16 559 440 7 760 1598 252 67 3 chr12 22955810 22956200 -98301330 + MTD LTR MaLR 2 416 -3 7 760 575 246 90 38 chr12 22957248 22957459 -98300071 - ID_B1 SINE B4 0 224 3 7 760 399 264 121 97 chr12 22958114 22958334 -98299196 + B3A SINE B2 8 216 0 7 760 590 188 10 10 chr12 22958343 22958445 -98299085 + B1_Mur2 SINE Alu 8 109 -40 7 760 541 256 17 0 chr12 22958652 22958769 -98298761 + RSINE1 SINE B4 3 121 -44 7 760 1271 95 16 0 chr12 22958770 22958960 -98298570 + B2_Mm2 SINE B2 1 193 -2 7 760 21 57 0 0 chr12 22959056 22959091 -98298439 + AT_rich Low_complexity Low_complexity 1 35 0 7 760 219 146 0 0 chr12 22959122 22959163 -98298367 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 7 760 228 316 13 13 chr12 22959654 22959731 -98297799 + ID2 SINE ID 2 78 -5 7 760 459 0 0 0 chr12 22959940 22959991 -98297539 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 760 222 348 44 11 chr12 22960031 22960121 -98297409 - L2c LINE L2 -39 3348 3256 7 760 370 262 112 77 chr12 22960131 22960446 -98297084 - ORR1E LTR MaLR 0 359 1 7 760 4376 10 0 57 chr12 22960499 22961022 -98296508 - MT2_Mm LTR ERVL 0 493 1 7 760 319 0 0 0 chr12 22961022 22961060 -98296470 - MERVL-int LTR ERVL 0 5485 5448 7 760 403 167 46 35 chr12 22961060 22961147 -98296383 - ORR1E-int LTR MaLR -1323 640 553 7 760 48751 16 2 0 chr12 22961147 22966497 -98291033 - MERVL-int LTR ERVL -125 5360 1 7 760 4376 10 0 57 chr12 22966497 22967020 -98290510 - MT2_Mm LTR ERVL 0 493 1 7 760 1021 150 0 0 chr12 22967207 22967354 -98290176 - B1_Mur1 SINE Alu 0 149 3 7 760 323 295 82 31 chr12 22967441 22967539 -98289991 + RSINE1 SINE B4 50 152 -13 7 760 1359 109 0 5 chr12 22967608 22967801 -98289729 + B2_Mm2 SINE B2 1 192 -3 7 760 2436 142 16 45 chr12 22968430 22968857 -98288673 - MTC LTR MaLR -6 415 1 7 760 510 297 71 21 chr12 22969884 22970025 -98287505 - RSINE1 SINE B4 -4 161 14 7 760 389 107 0 0 chr12 22970387 22970443 -98287087 + RMER6D LTR ERVK 1 56 -664 7 760 341 211 0 0 chr12 22970699 22970756 -98286774 + B3 SINE B2 73 129 -87 7 760 562 272 0 13 chr12 22971191 22971340 -98286190 - B1_Mm SINE Alu 0 147 1 7 760 451 31 31 0 chr12 22971520 22971585 -98285945 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 7 760 1409 210 107 27 chr12 22971727 22972064 -98285466 + MTD LTR MaLR 16 379 -40 7 760 749 186 7 54 chr12 22972083 22972231 -98285299 - B1_Mus1 SINE Alu 0 148 8 7 760 347 122 0 0 chr12 22972231 22972280 -98285250 + MTD LTR MaLR 373 421 0 7 760 291 116 0 0 chr12 22972499 22972542 -98284988 + MTC LTR MaLR 92 134 -287 7 760 562 49 12 12 chr12 22973080 22973163 -98284367 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 760 698 272 92 42 chr12 22973192 22973430 -98284100 - B4A SINE B4 -38 254 5 7 760 539 252 81 0 chr12 22973558 22973681 -98283849 + ETnERV2-int LTR ERVK 7070 7202 -204 7 760 2569 80 89 34 chr12 22974118 22974532 -98282998 + RLTR6_Mm LTR ERV1 203 639 -15 7 760 3100 58 9 30 chr12 22974532 22975239 -98282291 + MMVL30-int LTR ERV1 21 829 -6949 7 760 270 115 19 0 chr12 22975265 22975317 -98282213 + MMVL30-int LTR ERV1 325 377 -2922 7 760 17040 47 38 12 chr12 22975610 22978516 -98279014 + MMVL30-int LTR ERV1 716 3698 0 7 760 2136 84 103 39 chr12 22978738 22979097 -98278433 + RLTR6_Mm LTR ERV1 203 584 -70 7 760 323 299 135 35 chr12 22979295 22979524 -98278006 + L2b LINE L2 2991 3242 -184 7 760 625 242 50 128 chr12 22979529 22979747 -98277783 + ID_B1 SINE B4 2 202 -22 7 760 276 194 153 0 chr12 22979978 22980050 -98277480 - MER5A1 DNA MER1_type -71 95 13 7 760 866 82 194 0 chr12 22980544 22980678 -98276852 + B2_Mm1a SINE B2 1 160 -33 8 760 540 0 0 0 chr12 22980678 22980738 -98276792 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 8 760 511 178 37 0 chr12 22980982 22981089 -98276441 - Lx3B LINE L1 -1 6972 6862 8 760 1169 62 7 0 chr12 22981630 22981774 -98275756 + B1_Mm SINE Alu 3 147 0 8 760 1199 84 8 0 chr12 22981776 22982039 -98275491 + (GAAA)n Simple_repeat Simple_repeat 1 264 0 8 760 2034 96 28 22 chr12 22982340 22982660 -98274870 - RLTRETN_Mm LTR ERVK 0 322 1 8 760 207 0 0 0 chr12 22982982 22983005 -98274525 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 760 335 259 8 114 chr12 22983007 22983138 -98274392 - PB1D10 SINE Alu 0 117 1 8 760 2282 74 29 3 chr12 22983558 22983869 -98273661 - IAPLTR2b LTR ERVK -8 319 1 8 760 600 291 33 11 chr12 22983869 22984052 -98273478 - MER63C DNA AcHobo -53 877 691 8 760 234 301 52 41 chr12 22984091 22984188 -98273342 + MER63D DNA AcHobo 537 634 -427 8 760 1028 309 120 14 chr12 22984123 22984540 -98272990 - MER63C DNA AcHobo -237 693 233 8 760 722 193 21 7 chr12 22984801 22984942 -98272588 + B1_Mur1 SINE Alu 1 143 -6 8 760 690 222 62 72 chr12 22985086 22985280 -98272250 + B3 SINE B2 13 204 -12 8 760 288 277 0 0 chr12 22985297 22985362 -98272168 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 760 434 221 161 112 chr12 22985378 22985455 -98272075 + B3 SINE B2 3 89 -127 8 760 909 112 27 20 chr12 22985455 22985601 -98271929 + B1_Mus1 SINE Alu 2 148 0 8 760 434 221 161 112 chr12 22985601 22985666 -98271864 + B3 SINE B2 90 152 -64 8 760 567 214 9 0 chr12 22986557 22986669 -98270861 - PB1D9 SINE Alu -6 114 2 8 760 1120 89 0 20 chr12 22986719 22986868 -98270662 + B1_Mus2 SINE Alu 2 147 0 8 760 1423 223 103 11 chr12 22987284 22987664 -98269866 - MTD LTR MaLR 0 419 5 8 760 833 190 0 14 chr12 22988148 22988292 -98269238 - B1_Mur3 SINE Alu -6 143 2 8 760 371 235 12 0 chr12 22988412 22988493 -98269037 + ID2 SINE ID 2 83 0 8 760 800 162 4 0 chr12 22988556 22988836 -98268694 + (TG)n Simple_repeat Simple_repeat 1 281 0 8 760 1587 48 0 0 chr12 22989224 22989411 -98268119 - B2_Mm1a SINE B2 -5 188 2 8 760 1553 52 5 10 chr12 22993437 22993631 -98263899 - B2_Mm1a SINE B2 0 193 1 8 760 190 267 149 3 chr12 22993725 22993799 -98263731 - MIRm SINE MIR -115 161 74 8 760 477 34 0 0 chr12 22994184 22994243 -98263287 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 760 257 260 18 78 chr12 22994261 22994404 -98263126 - B4A SINE B4 -40 125 1 8 760 255 394 15 30 chr12 22995755 22995886 -98261644 - MER3 DNA MER1_type -78 131 3 8 760 324 325 98 13 chr12 22995896 22996049 -98261481 + MER5A1 DNA MER1_type 1 166 0 8 760 232 262 11 56 chr12 22996123 22996212 -98261318 - MER5B DNA MER1_type -62 116 32 8 760 465 301 80 80 chr12 22996609 22996797 -98260733 - B3A SINE B2 -5 190 3 8 760 229 133 0 48 chr12 22997067 22997130 -98260400 + T-rich Low_complexity Low_complexity 1 60 0 8 760 1010 104 21 7 chr12 22997130 22997275 -98260255 - B1_Mus2 SINE Alu 0 147 1 8 760 859 173 173 0 chr12 22997327 22997552 -98259978 + Lx9 LINE L1 7381 7644 0 8 760 5196 125 27 30 chr12 22998370 22999260 -98258270 - RMER17D LTR ERVK -2 887 1 8 760 411 239 34 34 chr12 22999846 22999993 -98257537 - L1_Mur3 LINE L1 -4044 1836 1690 8 760 468 276 83 0 chr12 23000074 23000302 -98257228 - L1_Mur3 LINE L1 -4317 1560 1314 1 760 466 261 19 34 chr12 23000599 23000805 -98256725 - L1_Mur3 LINE L1 -6622 1106 904 1 760 386 364 53 16 chr12 23002848 23003038 -98254492 + MTD LTR MaLR 15 211 -208 2 760 1861 172 90 24 chr12 23003040 23003341 -98254189 - RLTR9D LTR ERVK -2 401 75 3 760 3298 41 5 5 chr12 23003341 23003737 -98253793 + MTA_Mm LTR MaLR 1 396 0 4 760 1861 172 90 24 chr12 23003737 23003811 -98253719 - RLTR9D LTR ERVK -329 74 1 3 760 180 111 0 0 chr12 23004019 23004046 -98253484 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 760 529 345 61 47 chr12 23004095 23004372 -98253158 + ORR1C2-int LTR MaLR 81 361 -1219 6 760 5473 233 50 18 chr12 23004413 23005788 -98251742 - Lx4B LINE L1 -4 7054 5637 7 760 1481 331 35 58 chr12 23005798 23006516 -98251014 + ORR1C2-int LTR MaLR 562 1262 -108 6 760 291 244 25 42 chr12 23006616 23006736 -98250794 - Lx4B LINE L1 -4 7054 6937 8 760 247 354 77 53 chr12 23006853 23007062 -98250468 - B3 SINE B2 0 216 3 9 760 7781 194 99 34 chr12 23007156 23007305 -98250225 + MurSatRep1 Unknown Unknown 2 164 -1973 1 760 328 306 65 0 chr12 23007305 23007429 -98250101 - B1_Mur2 SINE Alu -17 132 1 1 760 7781 194 99 34 chr12 23007429 23008275 -98249255 + MurSatRep1 Unknown Unknown 165 1126 -1011 1 760 1224 126 6 0 chr12 23008275 23008458 -98249072 - B2_Mm1a SINE B2 -8 185 2 1 760 7781 194 99 34 chr12 23008458 23009465 -98248065 + MurSatRep1 Unknown Unknown 1127 2135 -2 1 760 564 305 60 35 chr12 23009602 23010334 -98247196 + MurSatRep1 Unknown Unknown 1691 2052 -85 1 760 508 273 0 0 chr12 23010334 23010473 -98247057 + MMSAT4 Satellite Satellite 30 168 0 1 760 564 305 60 35 chr12 23010473 23010643 -98246887 + MurSatRep1 Unknown Unknown 2053 2137 0 1 760 527 317 51 31 chr12 23010630 23010982 -98246548 + MurSatRep1 Unknown Unknown 1691 2049 -88 1 760 385 272 22 22 chr12 23010922 23011061 -98246469 + MMSAT4 Satellite Satellite 30 168 0 1 760 445 306 54 63 chr12 23011015 23011332 -98246198 + MurSatRep1 Unknown Unknown 1747 2060 -77 1 760 393 260 46 27 chr12 23011258 23011476 -98246054 + MMSAT4 Satellite Satellite 1 222 -12 1 760 2972 94 2 2 chr12 23011526 23011931 -98245599 + L1_Mus1 LINE L1 6163 6567 0 1 760 344 251 10 10 chr12 23011951 23012089 -98245441 + MMSAT4 Satellite Satellite 1 138 0 2 760 333 254 76 8 chr12 23012290 23012409 -98245121 + ORR1C2 LTR MaLR 227 370 -14 6 760 785 174 21 0 chr12 23012701 23012845 -98244685 + B1_Mus1 SINE Alu 2 148 0 2 760 253 81 0 0 chr12 23012864 23012901 -98244629 - L1M4 LINE L1 -2402 3744 3708 2 760 14810 49 20 0 chr12 23012898 23014753 -98242777 + L1Md_F2 LINE L1 3695 5586 -297 2 760 8161 42 9 2 chr12 23014753 23015739 -98241791 + L1Md_F2 LINE L1 5587 6579 -3 2 760 2137 249 67 28 chr12 23015936 23016934 -98240596 - L1_Mur3 LINE L1 -3753 2127 1087 2 760 495 241 47 29 chr12 23016919 23017090 -98240440 - L1_Mur3 LINE L1 -6507 1221 1048 2 760 459 0 0 0 chr12 23017645 23017696 -98239834 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 760 24 0 0 0 chr12 23017725 23017749 -98239781 + AT_rich Low_complexity Low_complexity 1 24 0 2 760 609 220 58 16 chr12 23017749 23017937 -98239593 - Lx2B LINE L1 -162 6814 6625 2 760 447 188 26 0 chr12 23017996 23018113 -98239417 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 2 760 402 189 0 32 chr12 23018113 23018299 -98239231 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 760 249 33 0 0 chr12 23018304 23018334 -98239196 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 3 760 632 293 38 19 chr12 23018517 23018727 -98238803 + RLTR11A2 LTR ERVK 132 346 -181 3 760 1153 82 0 0 chr12 23018727 23018874 -98238656 + B1_Mm SINE Alu 1 147 0 3 760 597 306 40 86 chr12 23018874 23018988 -98238542 + RLTR11A2 LTR ERVK 334 441 -87 3 760 417 130 33 82 chr12 23018988 23019172 -98238358 + (TTA)n Simple_repeat Simple_repeat 2 176 0 3 760 420 210 22 17 chr12 23019433 23019612 -98237918 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 760 305 200 26 17 chr12 23019631 23019748 -98237782 + (CATA)n Simple_repeat Simple_repeat 4 121 0 3 760 239 248 44 44 chr12 23019757 23019871 -98237659 - L1M1 LINE L1 -401 5899 5786 3 760 344 233 267 0 chr12 23020385 23020501 -98237029 + L1MC1 LINE L1 6187 6333 0 3 760 1773 93 174 10 chr12 23020511 23020815 -98236715 + L1_Mus3 LINE L1 6279 6632 -6 3 760 743 264 25 0 chr12 23020824 23020987 -98236543 + B3A SINE B2 2 168 -30 3 760 214 304 138 37 chr12 23021382 23021570 -98235960 + MIRc SINE MIR 2 208 -60 4 760 369 0 0 0 chr12 23022144 23022185 -98235345 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 760 231 281 29 77 chr12 23022203 23022278 -98235252 - RMER12 LTR ERVK -487 835 766 4 760 1495 51 11 11 chr12 23022278 23022528 -98235002 - MT2_Mm LTR ERVL 0 493 1 4 760 319 0 0 0 chr12 23022528 23022566 -98234964 - MERVL-int LTR ERVL 0 5485 5448 4 760 384 191 46 35 chr12 23022566 23022653 -98234877 - ORR1A3-int LTR MaLR -1323 640 553 4 760 2521 21 3 0 chr12 23022653 23022941 -98234589 - MERVL-int LTR ERVL -125 5360 5072 4 760 4604 12 0 0 chr12 23022935 23023443 -98234087 - MERVL-int LTR ERVL -4977 508 1 4 760 4417 20 0 2 chr12 23023443 23023937 -98233593 - MT2_Mm LTR ERVL 0 493 1 4 760 186 273 149 35 chr12 23026711 23026825 -98230705 - MIRc SINE MIR -125 143 17 4 760 269 229 69 28 chr12 23027387 23027459 -98230071 + PB1D10 SINE Alu 23 97 -20 4 760 796 172 7 20 chr12 23027465 23027613 -98229917 + B1_Mur4 SINE Alu 1 146 -4 4 760 852 212 28 42 chr12 23027641 23027858 -98229672 + ID_B1 SINE B4 3 216 -8 4 760 627 285 14 68 chr12 23028766 23028973 -98228557 + B4A SINE B4 24 219 -73 4 760 454 314 91 17 chr12 23028991 23029166 -98228364 + B3A SINE B2 2 189 -27 5 760 820 182 0 0 chr12 23029197 23029334 -98228196 + B1_Mur4 SINE Alu 1 137 -13 5 760 303 181 0 0 chr12 23029425 23029497 -98228033 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 760 2393 74 0 80 chr12 23029509 23029860 -98227670 + ORR1A2 LTR MaLR 1 323 -4 5 760 567 272 25 19 chr12 23030579 23030740 -98226790 - RSINE1 SINE B4 -3 162 1 5 760 232 125 35 35 chr12 23030762 23030820 -98226710 + A-rich Low_complexity Low_complexity 2 59 0 5 760 249 286 70 16 chr12 23031264 23031392 -98226138 - Charlie5 DNA MER1_type 0 2624 2490 5 760 1093 187 27 5 chr12 23031442 23031662 -98225868 - URR1B DNA MER1_type 0 225 1 5 760 186 217 0 0 chr12 23031875 23031944 -98225586 + GA-rich Low_complexity Low_complexity 1 69 0 5 760 2212 192 24 40 chr12 23033191 23033646 -98223884 - RLTR1D LTR ERV1 -1 604 157 5 760 513 0 0 0 chr12 23034792 23034849 -98222681 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 760 380 130 14 0 chr12 23035836 23035905 -98221625 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 6 760 6859 68 4 0 chr12 23036493 23037333 -98220197 + IAP-d-int LTR ERVK 5700 6542 0 6 760 2375 83 3 48 chr12 23037333 23037685 -98219845 + RLTR10D LTR ERVK 1 336 -23 6 760 516 95 0 0 chr12 23037917 23038001 -98219529 + (TC)n Simple_repeat Simple_repeat 1 84 0 6 760 599 214 44 37 chr12 23038041 23038177 -98219353 - B1_Mur3 SINE Alu -3 146 10 6 760 675 216 8 0 chr12 23038210 23038335 -98219195 - ID_B1 SINE B4 -7 217 92 6 760 3438 82 18 31 chr12 23039304 23039792 -98217738 + RLTR45 LTR ERVK 1 482 0 6 760 1359 147 9 18 chr12 23040334 23040562 -98216968 + URR1A DNA MER1_type 1 226 0 6 760 211 338 92 37 chr12 23041221 23041384 -98216146 - MIRb SINE MIR 0 268 97 6 760 701 224 65 40 chr12 23041387 23041587 -98215943 + B4A SINE B4 2 206 -86 6 760 716 240 0 0 chr12 23041815 23041944 -98215586 + RSINE1 SINE B4 3 131 -34 7 760 234 320 0 26 chr12 23042079 23042156 -98215374 - MER2 DNA MER2_type -263 82 8 7 760 234 264 0 40 chr12 23042599 23042674 -98214856 + G-rich Low_complexity Low_complexity 5 76 0 7 760 244 304 79 18 chr12 23042772 23042886 -98214644 + MIRb SINE MIR 23 143 -125 7 760 2234 147 13 102 chr12 23042888 23043202 -98214328 - MTC LTR MaLR 0 421 108 7 760 659 204 44 22 chr12 23043202 23043337 -98214193 + B1_Mur3 SINE Alu 2 139 -10 7 760 180 0 0 0 chr12 23043338 23043358 -98214172 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 7 760 2234 147 13 102 chr12 23043358 23043387 -98214143 - MTC LTR MaLR -314 107 99 7 760 192 40 0 0 chr12 23043387 23043412 -98214118 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 760 405 39 0 0 chr12 23043412 23043462 -98214068 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 760 2234 147 13 102 chr12 23043462 23043576 -98213954 - MTC LTR MaLR -323 98 2 7 760 261 167 83 0 chr12 23044668 23044716 -98212814 + MTE2a LTR MaLR 1 52 -327 7 760 205 182 0 0 chr12 23044717 23044761 -98212769 + T-rich Low_complexity Low_complexity 4 47 0 8 760 842 206 99 11 chr12 23044765 23044956 -98212574 - B3 SINE B2 -6 210 3 8 760 915 159 14 0 chr12 23044985 23045130 -98212400 - B1_Mus1 SINE Alu -1 147 1 8 760 1298 180 0 5 chr12 23045161 23045384 -98212146 + URR1B DNA MER1_type 1 222 -3 8 760 722 223 171 103 chr12 23045387 23045697 -98211833 + MTE2a LTR MaLR 35 365 -14 7 760 334 333 39 79 chr12 23045804 23045931 -98211599 + RSINE1 SINE B4 34 155 -10 8 760 342 0 0 0 chr12 23045931 23045969 -98211561 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 760 381 43 0 0 chr12 23045969 23046015 -98211515 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 760 2649 105 10 20 chr12 23047386 23047793 -98209737 - RLTR9E LTR ERVK -6 403 1 8 760 693 0 0 0 chr12 23047876 23047953 -98209577 + (TC)n Simple_repeat Simple_repeat 2 78 0 8 760 546 131 0 0 chr12 23047953 23048037 -98209493 - B2_Mm2 SINE B2 -109 86 3 8 760 340 243 0 0 chr12 23048123 23048197 -98209333 + PB1D10 SINE Alu 44 117 0 9 760 288 203 162 0 chr12 23048191 23048265 -98209265 + RSINE1 SINE B4 42 127 -38 9 760 451 219 81 32 chr12 23048270 23048393 -98209137 + B1F1 SINE Alu 21 149 0 9 760 636 192 75 102 chr12 23048424 23048610 -98208920 + B3 SINE B2 15 195 0 9 760 232 319 60 60 chr12 23049532 23049732 -98207798 + L1MD2 LINE L1 6084 6283 -76 9 760 28 0 0 0 chr12 23049775 23049803 -98207727 + AT_rich Low_complexity Low_complexity 1 28 0 9 760 724 284 45 45 chr12 23049805 23050096 -98207434 + B4A SINE B4 2 292 0 9 760 955 112 0 7 chr12 23050378 23050522 -98207008 - URR1B DNA MER1_type 0 225 83 9 760 183 320 39 26 chr12 23051143 23051220 -98206310 + MIRb SINE MIR 86 163 -105 9 760 225 326 89 34 chr12 23051221 23051367 -98206163 - RMER15 LTR ERVL -6 569 416 9 760 304 259 3 32 chr12 23051615 23051715 -98205815 - MT2A LTR ERVL -496 105 9 1 760 790 256 73 74 chr12 23052210 23052505 -98205025 - MTE2a LTR MaLR 0 379 34 1 760 897 157 151 5 chr12 23052505 23052697 -98204833 + URR1A DNA MER1_type 1 220 -6 1 760 2274 42 3 0 chr12 23052738 23053021 -98204509 + LTRIS_Mm LTR ERV1 199 482 0 1 760 827 67 0 75 chr12 23053836 23054225 -98203305 + (GGGGA)n Simple_repeat Simple_repeat 1 359 0 1 760 2556 60 0 3 chr12 23054424 23054742 -98202788 + L1Md_F3 LINE L1 6254 6570 -14 1 760 698 220 28 0 chr12 23054911 23055052 -98202478 + B1_Mus1 SINE Alu 3 147 -1 1 760 216 97 0 0 chr12 23055053 23055084 -98202446 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 760 294 260 143 99 chr12 23055149 23055344 -98202186 + MLT1F1 LTR MaLR 141 334 -226 1 760 849 218 83 0 chr12 23055567 23055760 -98201770 + B3 SINE B2 3 211 -5 1 760 490 188 157 33 chr12 23055785 23055906 -98201624 + B1_Mur2 SINE Alu 1 136 -13 1 760 318 26 0 0 chr12 23055916 23055955 -98201575 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 1 760 201 147 0 0 chr12 23055955 23055989 -98201541 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1 760 342 154 0 0 chr12 23056134 23056212 -98201318 + CT-rich Low_complexity Low_complexity 2 79 0 1 760 513 0 0 0 chr12 23056212 23056269 -98201261 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 760 787 260 13 44 chr12 23057430 23057659 -98199871 + ID_B1 SINE B4 3 224 0 1 760 895 95 79 0 chr12 23057695 23057821 -98199709 + B1_Mus1 SINE Alu 1 136 -12 1 760 744 61 0 0 chr12 23057886 23057984 -98199546 + (TC)n Simple_repeat Simple_repeat 2 99 0 1 760 552 344 37 0 chr12 23058027 23058242 -98199288 - L1MD LINE L1 -540 5819 5597 1 760 410 255 189 0 chr12 23058299 23058405 -98199125 - RSINE1 SINE B4 -36 129 4 1 760 4388 143 39 16 chr12 23058412 23058741 -98198789 + RMER17D2 LTR ERVK 1 334 -475 1 760 950 0 0 9 chr12 23058741 23058852 -98198678 + (TCTCC)n Simple_repeat Simple_repeat 2 111 0 1 760 4388 143 39 16 chr12 23058852 23059313 -98198217 + RMER17D2 LTR ERVK 335 809 0 1 760 966 274 115 79 chr12 23059369 23059865 -98197665 - MT2A LTR ERVL -19 514 1 1 760 391 276 82 0 chr12 23059866 23060000 -98197530 - L1MD LINE L1 -676 5566 5422 1 760 763 218 18 12 chr12 23060017 23060184 -98197346 + B3A SINE B2 1 168 -30 1 760 531 0 0 0 chr12 23060187 23060246 -98197284 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 760 645 236 79 84 chr12 23060318 23060508 -98197022 - B3 SINE B2 -26 190 2 1 760 202 200 36 36 chr12 23060516 23060599 -98196931 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 1 760 835 137 0 67 chr12 23060601 23060750 -98196780 - B1_Mus1 SINE Alu 0 148 10 1 760 967 222 37 25 chr12 23061119 23061341 -98196189 - MTD LTR MaLR -14 405 194 1 760 906 248 27 41 chr12 23061336 23061373 -98196157 - B3 SINE B2 0 216 188 1 760 387 0 0 0 chr12 23061373 23061416 -98196114 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 760 906 248 27 41 chr12 23061416 23061597 -98195933 - B3 SINE B2 -29 187 1 1 760 874 176 41 25 chr12 23061597 23061792 -98195738 - MTD LTR MaLR -208 213 1 1 760 516 246 163 7 chr12 23062419 23062554 -98194976 + RSINE1 SINE B4 6 161 -4 1 760 24 0 0 0 chr12 23062559 23062583 -98194947 + AT_rich Low_complexity Low_complexity 1 24 0 1 760 549 257 219 55 chr12 23062702 23062833 -98194697 - RMER10A LTR ERVL 0 442 301 1 760 947 34 8 0 chr12 23062833 23062952 -98194578 + (GA)n Simple_repeat Simple_repeat 1 120 0 1 760 549 257 219 55 chr12 23062952 23063145 -98194385 - RMER10A LTR ERVL -142 300 65 1 760 312 269 86 56 chr12 23063599 23063796 -98193734 + MLT1N2 LTR MaLR 355 557 -5 1 760 204 304 54 0 chr12 23064196 23064252 -98193278 - MIRm SINE MIR -121 155 97 1 760 181 125 200 0 chr12 23064478 23064518 -98193012 - L3 LINE CR1 -3526 963 916 1 760 1024 261 22 9 chr12 23064730 23064954 -98192576 - MTEa LTR MaLR -152 227 1 1 760 273 250 103 0 chr12 23065089 23065157 -98192373 + ID_B1 SINE B4 51 125 -99 1 760 291 278 34 77 chr12 23065117 23065170 -98192360 + PB1D10 SINE Alu 5 51 -66 1 760 979 144 0 0 chr12 23065170 23065316 -98192214 - B1_Mus2 SINE Alu -1 146 1 1 760 291 278 34 77 chr12 23065316 23065379 -98192151 + PB1D10 SINE Alu 52 116 -1 1 760 2632 91 39 5 chr12 23065585 23065972 -98191558 + MTB LTR MaLR 1 400 0 1 760 617 250 133 14 chr12 23066108 23066319 -98191211 + B4A SINE B4 3 238 -54 1 760 438 139 0 0 chr12 23066811 23066897 -98190633 + (TTTC)n Simple_repeat Simple_repeat 4 89 0 1 760 1400 23 0 11 chr12 23066901 23067078 -98190452 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 1 760 224 348 54 0 chr12 23067111 23067129 -98190401 - ID_B1 SINE B4 -127 97 1 1 760 248 311 40 0 chr12 23067129 23067203 -98190327 - ID4_ SINE ID -6 77 1 1 760 896 189 0 13 chr12 23067216 23067366 -98190164 - B1_Mur1 SINE Alu 0 149 2 1 760 887 164 7 0 chr12 23067414 23067560 -98189970 + B1_Mus1 SINE Alu 1 147 -1 1 760 505 295 45 6 chr12 23067678 23067835 -98189695 - RSINE1 SINE B4 0 165 3 1 760 465 234 82 25 chr12 23067977 23068135 -98189395 - MTD-int LTR MaLR -1091 167 1 1 760 1131 213 239 9 chr12 23068141 23068472 -98189058 - MTD LTR MaLR 0 419 13 1 760 270 0 0 0 chr12 23068472 23068502 -98189028 + (A)n Simple_repeat Simple_repeat 1 30 0 1 11 4322 225 46 71 chr12 23068568 23068889 -98188641 + MTD-int LTR MaLR 98 394 -864 1 761 1199 41 0 7 chr12 23068889 23069027 -98188503 + B1_Mus2 SINE Alu 1 138 -9 1 761 278 26 0 25 chr12 23069027 23069067 -98188463 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 761 4322 225 46 71 chr12 23069074 23069937 -98187593 + MTD-int LTR MaLR 395 1252 -6 1 761 1760 197 82 0 chr12 23069950 23070315 -98187215 + MTD LTR MaLR 25 419 0 1 761 8603 30 0 0 chr12 23070519 23071573 -98185957 - L1Md_T LINE L1 0 6582 5529 1 761 837 244 14 29 chr12 23071914 23072121 -98185409 - B3 SINE B2 -11 205 2 1 761 222 271 0 0 chr12 23072406 23072524 -98185006 + (TGGA)n Simple_repeat Simple_repeat 3 120 0 1 761 325 130 0 100 chr12 23072599 23072659 -98184871 + URR1A DNA MER1_type 59 112 -114 1 761 1120 72 0 0 chr12 23072661 23072799 -98184731 + B1_Mm SINE Alu 1 138 -9 1 761 576 0 0 0 chr12 23072799 23072863 -98184667 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 761 645 157 219 104 chr12 23073177 23073369 -98184161 + URR1B DNA MER1_type 12 225 0 1 761 1032 217 14 0 chr12 23073407 23073619 -98183911 - B3 SINE B2 0 216 2 1 761 185 245 38 0 chr12 23073780 23073833 -98183697 - MIRc SINE MIR -129 139 85 1 761 233 304 0 61 chr12 23074684 23074782 -98182748 + MLT1K LTR MaLR 504 595 0 1 761 5485 127 35 57 chr12 23075604 23076604 -98180926 + RLTR13A3 LTR ERVK 1 978 0 1 761 1400 289 8 32 chr12 23078000 23078033 -98179497 + ORR1D2 LTR MaLR 1 33 -337 1 761 1203 148 81 9 chr12 23078033 23078244 -98179286 - URR1A DNA MER1_type 0 226 1 1 761 1400 289 8 32 chr12 23078244 23078585 -98178945 + ORR1D2 LTR MaLR 34 366 -4 1 761 293 328 35 0 chr12 23078757 23078873 -98178657 - RMER15 LTR ERVL -16 559 440 1 761 1681 251 43 2 chr12 23078873 23079272 -98178258 + MTD LTR MaLR 2 416 -3 1 761 550 296 29 29 chr12 23080309 23080483 -98177047 - ID_B1 SINE B4 0 224 51 1 761 394 246 221 29 chr12 23081156 23081306 -98176224 + B3A SINE B2 8 188 -28 1 761 351 65 0 0 chr12 23081306 23081352 -98176178 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 761 391 246 221 29 chr12 23081352 23081373 -98176157 + B3 SINE B2 189 211 -5 1 761 223 250 140 53 chr12 23081370 23081381 -98176149 + ID_B1 SINE B4 80 101 -123 1 761 252 236 18 18 chr12 23081381 23081437 -98176093 + B1_Mus2 SINE Alu 7 62 -85 1 761 223 250 140 53 chr12 23081437 23081484 -98176046 + ID_B1 SINE B4 102 203 -21 1 761 331 224 0 0 chr12 23081622 23081680 -98175850 + B3 SINE B2 72 129 -87 1 761 234 128 26 0 chr12 23081845 23081884 -98175646 + MLT1C LTR MaLR 149 188 -279 1 761 593 259 0 13 chr12 23082123 23082272 -98175258 - B1_Mm SINE Alu 0 147 1 1 761 653 118 9 0 chr12 23082452 23082562 -98174968 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 1 761 1431 205 94 98 chr12 23082704 23083027 -98174503 + MTD LTR MaLR 16 365 -54 1 761 1290 52 0 0 chr12 23083027 23083257 -98174273 + (TTTCC)n Simple_repeat Simple_repeat 1 230 0 1 761 1431 205 94 98 chr12 23083257 23083291 -98174239 + MTD LTR MaLR 366 376 -43 1 761 716 175 33 53 chr12 23083291 23083442 -98174088 - B1_Mus1 SINE Alu 0 148 1 1 761 1431 205 94 98 chr12 23083442 23083488 -98174042 + MTD LTR MaLR 377 418 -1 1 761 225 281 0 0 chr12 23083610 23083674 -98173856 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 761 312 116 0 0 chr12 23083708 23083751 -98173779 + MTC LTR MaLR 92 134 -287 1 761 538 71 12 12 chr12 23084292 23084377 -98173153 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 761 603 285 92 42 chr12 23084406 23084644 -98172886 - B4A SINE B4 -38 254 5 1 761 183 242 181 38 chr12 23084813 23084946 -98172584 + L2a LINE L2 3004 3155 -271 1 761 1297 99 6 6 chr12 23085141 23085324 -98172206 + B2_Mm1a SINE B2 1 183 -10 1 761 451 204 37 0 chr12 23085556 23085664 -98171866 - Lx3B LINE L1 0 6973 6862 1 761 427 248 85 28 chr12 23086812 23086953 -98170577 - B1F SINE Alu 0 149 1 1 761 1284 306 87 115 chr12 23087317 23088030 -98169500 - MER63C DNA AcHobo -5 925 233 1 761 727 193 21 7 chr12 23088292 23088433 -98169097 + B1_Mur1 SINE Alu 1 143 -6 1 761 713 234 68 16 chr12 23088576 23088766 -98168764 + B3 SINE B2 13 201 -15 1 761 251 292 0 0 chr12 23088787 23088852 -98168678 + (TATG)n Simple_repeat Simple_repeat 4 68 0 1 761 246 147 0 0 chr12 23088912 23088946 -98168584 + B3 SINE B2 66 99 -117 1 761 910 106 27 47 chr12 23088946 23089095 -98168435 + B1_Mus1 SINE Alu 2 147 -1 1 761 326 42 21 0 chr12 23089101 23089149 -98168381 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 761 360 177 16 0 chr12 23089151 23089213 -98168317 + B3 SINE B2 90 152 -64 1 761 442 243 18 18 chr12 23090103 23090216 -98167314 - PB1D9 SINE Alu -6 114 2 1 761 1110 70 7 7 chr12 23090269 23090412 -98167118 + B1_Mus2 SINE Alu 5 147 0 1 761 324 0 0 0 chr12 23090412 23090448 -98167082 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 2 761 1480 211 106 8 chr12 23090858 23091236 -98166294 - MTD LTR MaLR 0 419 5 2 761 514 346 34 17 chr12 23091463 23091701 -98165829 - MER46C DNA MER2_type -1 337 96 2 761 827 196 0 20 chr12 23091715 23091866 -98165664 - B1_Mur3 SINE Alu 0 149 2 2 761 371 235 12 0 chr12 23091986 23092067 -98165463 + ID2 SINE ID 2 83 0 2 761 318 187 0 0 chr12 23092124 23092215 -98165315 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 761 696 186 0 0 chr12 23092294 23092519 -98165011 + (TG)n Simple_repeat Simple_repeat 1 225 0 2 761 29 0 0 0 chr12 23094420 23094449 -98163081 + GC_rich Low_complexity Low_complexity 1 29 0 2 761 188 0 74 0 chr12 23096047 23096074 -98161456 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2 761 194 260 97 3 chr12 23097334 23097406 -98160124 - MIRc SINE MIR -115 161 80 2 761 288 0 0 0 chr12 23097792 23097824 -98159706 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 761 287 278 0 40 chr12 23097885 23097986 -98159544 - B4A SINE B4 -195 97 1 2 761 280 370 23 30 chr12 23099763 23099894 -98157636 - MER3 DNA MER1_type -77 132 3 2 761 352 311 98 13 chr12 23099904 23100057 -98157473 + MER5A1 DNA MER1_type 1 166 0 2 761 232 262 11 56 chr12 23100131 23100220 -98157310 - MER5B DNA MER1_type -62 116 32 2 761 546 274 69 69 chr12 23100621 23100809 -98156721 - B3A SINE B2 -5 190 3 2 761 229 103 17 33 chr12 23101080 23101140 -98156390 + T-rich Low_complexity Low_complexity 2 60 0 2 761 1058 92 0 7 chr12 23101155 23101298 -98156232 - B1_Mm SINE Alu -5 142 1 2 761 832 191 173 0 chr12 23101350 23101575 -98155955 + Lx9 LINE L1 7381 7644 0 2 761 775 240 66 24 chr12 23101911 23102124 -98155406 - ID_B1 SINE B4 -2 222 1 2 761 259 281 202 8 chr12 23102436 23102565 -98154965 + Lx8 LINE L1 6978 7131 -342 2 761 413 158 12 0 chr12 23102637 23102719 -98154811 + GA-rich Low_complexity Low_complexity 3 85 0 2 761 266 127 45 60 chr12 23102934 23103001 -98154529 + (CCCTAA)n Simple_repeat Simple_repeat 5 70 0 2 761 330 349 34 64 chr12 23103040 23103276 -98154254 + MT2A LTR ERVL 74 302 -231 2 761 1076 129 23 6 chr12 23103857 23104028 -98153502 - RMER17D LTR ERVK -2 887 714 2 761 1303 258 38 3 chr12 23104093 23104408 -98153122 + MTD LTR MaLR 91 416 -3 2 761 588 251 90 38 chr12 23105440 23105651 -98151879 - ID_B1 SINE B4 0 224 3 2 761 370 252 36 45 chr12 23106317 23106429 -98151101 + B3 SINE B2 8 118 -98 2 761 351 65 0 0 chr12 23106468 23106514 -98151016 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 761 541 226 10 10 chr12 23106543 23106646 -98150884 + B1_Mur2 SINE Alu 7 109 -40 2 761 472 299 17 0 chr12 23106853 23106970 -98150560 + RSINE1 SINE B4 3 121 -44 2 761 1393 74 16 0 chr12 23106971 23107161 -98150369 + B2_Mm2 SINE B2 1 193 -2 2 761 26 30 0 0 chr12 23107256 23107289 -98150241 + AT_rich Low_complexity Low_complexity 1 33 0 2 761 207 146 0 0 chr12 23107320 23107361 -98150169 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2 761 295 289 13 13 chr12 23107844 23107921 -98149609 + ID4_ SINE ID 2 78 -5 2 761 276 326 21 21 chr12 23107921 23107941 -98149589 + B4A SINE B4 2 98 -194 2 761 591 51 0 0 chr12 23108129 23108208 -98149322 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 761 209 344 53 11 chr12 23108248 23108342 -98149188 - L2c LINE L2 -39 3348 3251 2 761 396 304 95 77 chr12 23108346 23108670 -98148860 - ORR1E LTR MaLR 0 370 1 2 761 980 163 0 0 chr12 23108905 23109052 -98148478 - B1_Mur1 SINE Alu 0 149 3 2 761 323 287 82 31 chr12 23109140 23109237 -98148293 + RSINE1 SINE B4 51 152 -13 2 761 1417 84 5 5 chr12 23109310 23109501 -98148029 + B2_Mm2 SINE B2 1 191 -4 2 761 2457 145 16 42 chr12 23110129 23110555 -98146975 - MTC LTR MaLR -6 415 1 2 761 559 288 68 0 chr12 23111571 23111703 -98145827 - RSINE1 SINE B4 -4 161 21 2 761 377 89 0 0 chr12 23112074 23112130 -98145400 + RMER6D LTR ERVK 1 56 -664 2 761 356 183 0 0 chr12 23112383 23112443 -98145087 + B3 SINE B2 70 129 -87 2 761 582 265 0 13 chr12 23112888 23113037 -98144493 - B1_Mm SINE Alu 0 147 1 2 761 641 56 11 0 chr12 23113217 23113307 -98144223 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 2 761 1282 212 92 87 chr12 23113445 23113800 -98143730 + MTD LTR MaLR 16 376 -43 2 761 707 182 33 53 chr12 23113800 23113951 -98143579 - B1_Mus1 SINE Alu 0 148 1 2 761 1282 212 92 87 chr12 23113951 23113997 -98143533 + MTD LTR MaLR 377 419 0 2 761 273 79 0 0 chr12 23114218 23114256 -98143274 + MTC LTR MaLR 92 129 -292 2 761 310 74 18 18 chr12 23114797 23114852 -98142678 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 761 591 268 92 42 chr12 23114881 23115119 -98142411 - B4A SINE B4 -38 254 5 2 761 496 268 81 0 chr12 23115247 23115370 -98142160 + ETnERV2-int LTR ERVK 7070 7202 -204 2 761 279 321 108 31 chr12 23115801 23116023 -98141507 + L2b LINE L2 3004 3242 -184 2 761 523 258 52 104 chr12 23116028 23116240 -98141290 + ID_B1 SINE B4 2 202 -22 2 761 236 208 153 0 chr12 23116472 23116544 -98140986 - MER5A1 DNA MER1_type -71 95 13 2 761 1063 101 6 0 chr12 23117039 23117198 -98140332 + B2_Mm1a SINE B2 1 160 -33 2 761 504 0 0 0 chr12 23117198 23117254 -98140276 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 2 761 356 248 41 8 chr12 23117496 23117618 -98139912 - Lx3B LINE L1 0 6973 6848 2 761 1061 104 7 0 chr12 23118141 23118285 -98139245 + B1_Mm SINE Alu 3 147 0 2 761 1060 124 0 11 chr12 23118305 23118485 -98139045 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 761 252 0 0 0 chr12 23118485 23118513 -98139017 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 761 419 241 85 28 chr12 23119147 23119288 -98138242 - B1F SINE Alu 0 149 1 2 761 545 299 49 9 chr12 23119654 23119880 -98137650 - MER63C DNA AcHobo -5 925 691 2 761 232 229 0 62 chr12 23119919 23119984 -98137546 + MER63D DNA AcHobo 537 597 -464 2 761 290 333 121 0 chr12 23119951 23120149 -98137381 - MER63C DNA AcHobo -237 693 472 2 761 432 116 69 11 chr12 23120196 23120283 -98137247 - RMER17D LTR ERVK -797 92 1 2 761 522 282 158 9 chr12 23120845 23121300 -98136230 - L1_Mur3 LINE L1 -4044 1836 1314 2 761 433 261 19 34 chr12 23121597 23121803 -98135727 - L1_Mur3 LINE L1 -6622 1106 904 2 761 601 48 0 0 chr12 23122530 23122613 -98134917 + L1Md_T LINE L1 6500 6582 0 2 761 339 358 52 21 chr12 23124004 23124195 -98133335 + MTD LTR MaLR 15 211 -208 2 761 1717 175 76 21 chr12 23124197 23124502 -98133028 - RLTR9D LTR ERVK -2 401 75 2 761 3333 36 5 5 chr12 23124502 23124898 -98132632 + MTA_Mm LTR MaLR 1 396 0 2 761 1717 175 76 21 chr12 23124898 23124972 -98132558 - RLTR9D LTR ERVK -329 74 1 2 761 249 344 120 16 chr12 23124974 23125166 -98132364 + MTD LTR MaLR 192 403 -16 2 761 375 60 0 0 chr12 23125178 23125228 -98132302 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 761 379 366 34 13 chr12 23125247 23125482 -98132048 + MTD-int LTR MaLR 24 263 -1107 2 761 837 116 0 70 chr12 23125625 23125783 -98131747 - B1_Mus2 SINE Alu 0 147 1 2 761 5887 237 19 8 chr12 23125787 23127192 -98130338 - Lx4B LINE L1 -1 7057 5637 2 761 1268 320 36 60 chr12 23127202 23127920 -98129610 + MTD-int LTR MaLR 562 1262 -108 2 761 295 241 25 41 chr12 23128023 23128144 -98129386 - Lx4B LINE L1 -4 7054 6936 2 761 674 211 14 0 chr12 23128562 23128709 -98128821 + MurSatRep1 Unknown Unknown 2 150 -1987 2 761 320 323 65 0 chr12 23128711 23128835 -98128695 - B1_Mur2 SINE Alu -17 132 1 2 761 8062 192 38 31 chr12 23128835 23129676 -98127854 + MurSatRep1 Unknown Unknown 284 1126 -1011 2 761 1373 87 6 0 chr12 23129676 23129859 -98127671 - B2_Mm1a SINE B2 -8 185 2 2 761 8062 192 38 31 chr12 23129859 23130858 -98126672 + MurSatRep1 Unknown Unknown 1127 2135 -2 2 761 468 283 26 26 chr12 23130971 23131193 -98126337 + MMSAT4 Satellite Satellite 1 222 -5 2 761 576 313 44 32 chr12 23131003 23132122 -98125408 + MurSatRep1 Unknown Unknown 1747 2137 0 2 761 332 273 50 50 chr12 23132062 23132201 -98125329 + MMSAT4 Satellite Satellite 30 168 0 2 761 561 305 62 44 chr12 23132155 23132539 -98124991 + MurSatRep1 Unknown Unknown 1747 2137 0 2 761 458 302 0 0 chr12 23132482 23132705 -98124825 + MMSAT4 Satellite Satellite 1 223 0 2 761 365 308 80 60 chr12 23132526 23132734 -98124796 + MurSatRep1 Unknown Unknown 1691 2030 -107 2 761 405 278 8 8 chr12 23132734 23132868 -98124662 + MMSAT4 Satellite Satellite 30 163 -5 2 761 2913 90 2 5 chr12 23132926 23133328 -98124202 + L1_Mus1 LINE L1 6166 6566 -1 2 761 448 298 71 41 chr12 23133344 23133638 -98123892 + MurSatRep1 Unknown Unknown 1835 2137 0 2 761 300 281 32 28 chr12 23133581 23133780 -98123750 + MMSAT4 Satellite Satellite 1 199 0 2 761 298 267 0 11 chr12 23133930 23134021 -98123509 + ORR1C2 LTR MaLR 293 382 -2 2 761 615 168 18 0 chr12 23134306 23134419 -98123111 + B1_Mus1 SINE Alu 2 116 -32 2 761 2247 239 71 14 chr12 23134636 23135640 -98121890 - L1_Mur2 LINE L1 -3798 2082 1086 2 761 504 0 0 0 chr12 23136248 23136304 -98121226 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 761 357 125 0 0 chr12 23136305 23136361 -98121169 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 761 687 214 48 26 chr12 23136427 23136622 -98120908 - Lx2B LINE L1 -176 6800 6611 2 761 283 258 21 0 chr12 23136629 23136726 -98120804 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 2 761 348 182 15 8 chr12 23136726 23136859 -98120671 + (TA)n Simple_repeat Simple_repeat 1 134 0 2 761 426 69 0 0 chr12 23136860 23136918 -98120612 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2 761 587 301 40 84 chr12 23137099 23137309 -98120221 + RLTR11A2 LTR ERVK 134 346 -181 2 761 1218 61 0 0 chr12 23137309 23137456 -98120074 + B1_Mm SINE Alu 1 147 0 2 761 587 301 40 84 chr12 23137456 23137568 -98119962 + RLTR11A2 LTR ERVK 347 442 -85 2 761 205 181 47 27 chr12 23137575 23137723 -98119807 + (TTATA)n Simple_repeat Simple_repeat 2 152 0 3 761 462 65 0 0 chr12 23137758 23137820 -98119710 + (TTA)n Simple_repeat Simple_repeat 2 63 0 3 761 458 193 22 17 chr12 23138047 23138226 -98119304 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 761 448 214 32 4 chr12 23138246 23138502 -98119028 + (CA)n Simple_repeat Simple_repeat 1 263 0 3 761 2936 35 0 12 chr12 23138953 23139298 -98118232 - IAPLTR4 LTR ERVK -4 341 1 3 761 4388 216 7 11 chr12 23139298 23140177 -98117353 - IAPLTR3-int LTR ERVK -20 6801 5927 3 761 3431 88 0 9 chr12 23140160 23140618 -98116912 - MMERVK10C-int LTR ERVK -1367 6214 5761 3 761 3311 93 2 18 chr12 23140606 23141056 -98116474 - MMERVK10C-int LTR ERVK -1936 5645 5203 3 761 803 109 28 49 chr12 23141314 23141458 -98116072 - MMERVK10C-int LTR ERVK -2911 4670 4530 3 761 444 184 9 37 chr12 23141488 23141595 -98115935 - MMETn-int LTR ERVK -2384 2460 2357 3 761 3370 145 151 3 chr12 23141591 23142213 -98115317 - MMERVK10C-int LTR ERVK -3126 4280 3567 3 761 680 219 379 30 chr12 23142239 23142461 -98115069 - MMERVK10C-int LTR ERVK -4653 2753 2454 3 761 474 212 88 0 chr12 23142477 23142590 -98114940 - RLTR45-int LTR ERVK -5077 1060 938 3 761 267 231 124 62 chr12 23142577 23142674 -98114856 - RLTR45-int LTR ERVK -5449 688 586 3 761 682 103 7 118 chr12 23142714 23142893 -98114637 - RLTR45-int LTR ERVK -4937 2307 2175 3 761 357 227 39 49 chr12 23142903 23143005 -98114525 - RLTR45-int LTR ERVK -5055 351 251 3 761 786 217 44 56 chr12 23143104 23143353 -98114177 - IAPLTR3-int LTR ERVK -5755 1066 821 3 761 651 173 15 23 chr12 23143352 23143482 -98114048 - IAPLTR3-int LTR ERVK -6686 135 7 3 761 2536 62 68 0 chr12 23143487 23143521 -98114009 - IAPLTR4 LTR ERVK 0 345 312 3 761 437 0 19 0 chr12 23143521 23143574 -98113956 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 761 2536 62 68 0 chr12 23143574 23143862 -98113668 - IAPLTR4 LTR ERVK -34 311 2 3 761 366 249 252 0 chr12 23143887 23144148 -98113382 + L1MC1 LINE L1 6012 6333 -11 3 761 2030 152 35 3 chr12 23144158 23144500 -98113030 + L1_Mus3 LINE L1 6279 6631 -7 3 761 685 268 24 0 chr12 23144510 23144674 -98112856 + B3A SINE B2 1 168 -30 3 761 255 256 115 18 chr12 23145137 23145259 -98112271 + MIR SINE MIR 67 208 -60 3 761 450 0 0 0 chr12 23145861 23145911 -98111619 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 761 35065 60 3 9 chr12 23147397 23152549 -98104981 + L1Md_F3 LINE L1 469 5586 -297 3 761 8250 44 1 4 chr12 23152550 23153550 -98103980 + L1Md_F3 LINE L1 5588 6584 0 3 761 399 21 0 0 chr12 23154383 23154431 -98103099 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 761 251 240 147 0 chr12 23155727 23155802 -98101728 + PB1D10 SINE Alu 12 97 -20 3 761 905 180 0 0 chr12 23155808 23155958 -98101572 + B1_Mur4 SINE Alu 1 150 0 3 761 796 231 28 37 chr12 23156001 23156217 -98101313 + ID_B1 SINE B4 3 216 -8 3 761 588 273 14 72 chr12 23157124 23157333 -98100197 + B4A SINE B4 24 220 -72 3 761 373 266 92 43 chr12 23157350 23157535 -98099995 + B3A SINE B2 2 195 -3 3 761 947 139 0 0 chr12 23157556 23157693 -98099837 + B1_Mur4 SINE Alu 1 137 -13 3 761 2380 84 0 58 chr12 23157820 23158163 -98099367 + ORR1A2 LTR MaLR 1 323 -4 3 761 225 159 0 0 chr12 23158174 23158218 -98099312 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 761 913 122 6 6 chr12 23158221 23158378 -98099152 + (GGGAA)n Simple_repeat Simple_repeat 4 160 0 3 761 519 279 38 12 chr12 23159067 23159227 -98098303 - RSINE1 SINE B4 -1 164 1 3 761 280 288 53 8 chr12 23159698 23159831 -98097699 - MER33 DNA MER1_type 0 324 186 3 761 962 200 32 5 chr12 23159875 23160091 -98097439 - URR1B DNA MER1_type -3 222 1 3 761 186 217 0 0 chr12 23160304 23160373 -98097157 + GA-rich Low_complexity Low_complexity 1 69 0 3 761 294 29 0 0 chr12 23162700 23162735 -98094795 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 761 638 58 11 0 chr12 23163731 23163818 -98093712 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 3 761 1172 57 17 11 chr12 23163830 23164009 -98093521 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 761 398 252 0 9 chr12 23164738 23164850 -98092680 - PB1D9 SINE Alu 0 120 10 3 761 549 230 47 13 chr12 23165038 23165188 -98092342 + B3 SINE B2 58 212 -4 3 761 856 83 0 43 chr12 23165257 23165395 -98092135 + B1_Mm SINE Alu 15 146 -1 3 761 559 218 60 0 chr12 23165458 23165591 -98091939 + ID_B1 SINE B4 82 222 -2 3 761 300 119 0 0 chr12 23165793 23165852 -98091678 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 761 204 149 0 0 chr12 23165851 23165898 -98091632 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 761 576 179 47 31 chr12 23165908 23166035 -98091495 - B1_Mur3 SINE Alu -12 137 9 3 761 679 192 8 0 chr12 23166067 23166192 -98091338 - ID_B1 SINE B4 -7 217 92 3 761 327 25 0 0 chr12 23168163 23168203 -98089327 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 761 633 233 60 30 chr12 23168254 23168453 -98089077 + B4A SINE B4 2 206 -86 3 761 638 242 8 0 chr12 23168681 23168809 -98088721 + RSINE1 SINE B4 3 131 -34 3 761 187 301 78 26 chr12 23169645 23169761 -98087769 + MIRb SINE MIR 23 144 -124 3 761 1885 129 10 10 chr12 23169762 23170076 -98087454 - MTC LTR MaLR 0 421 108 3 761 601 150 91 70 chr12 23170079 23170222 -98087308 + B1_Mus2 SINE Alu 2 147 0 3 761 222 193 0 0 chr12 23170227 23170284 -98087246 + GA-rich Low_complexity Low_complexity 1 57 0 3 761 840 111 0 0 chr12 23171582 23171735 -98085795 + (TC)n Simple_repeat Simple_repeat 2 154 0 3 761 630 60 0 0 chr12 23171735 23171819 -98085711 - B2_Mm2 SINE B2 -109 86 3 3 761 333 259 0 0 chr12 23171892 23171973 -98085557 + PB1D10 SINE Alu 30 110 -7 3 761 403 212 12 0 chr12 23171985 23172065 -98085465 + RSINE1 SINE B4 53 133 -32 3 761 387 276 22 22 chr12 23172050 23172187 -98085343 + B1F1 SINE Alu 13 149 0 3 761 552 224 0 8 chr12 23172218 23172335 -98085195 + B3 SINE B2 15 130 -86 3 761 705 224 30 18 chr12 23172978 23173142 -98084388 - B3A SINE B2 -30 168 3 3 761 203 293 112 8 chr12 23173205 23173339 -98084191 + L2c LINE L2 3017 3164 -223 3 761 298 312 28 0 chr12 23173536 23173645 -98083885 + PB1D7 SINE Alu 3 114 -6 3 761 246 333 8 42 chr12 23173652 23173771 -98083759 - MIRb SINE MIR -149 119 5 3 761 533 15 15 0 chr12 23174936 23175002 -98082528 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 761 610 303 43 32 chr12 23175180 23175460 -98082070 + B4A SINE B4 2 284 -8 3 761 283 116 0 0 chr12 23175752 23175795 -98081735 - URR1B DNA MER1_type 0 225 183 3 761 3345 64 28 7 chr12 23176067 23176494 -98081036 - RLTR10C LTR ERVK 0 436 1 3 761 33212 44 12 13 chr12 23176494 23180498 -98077032 - MMERVK10C-int LTR ERVK 0 7581 3579 3 761 39356 46 8 0 chr12 23180525 23186973 -98070557 - L1Md_T LINE L1 0 6585 102 3 761 8583 55 6 1 chr12 23187064 23188103 -98069427 - MMERVK10C-int LTR ERVK -3986 3595 2552 3 761 440 63 0 0 chr12 23188109 23188172 -98069358 - MMERVK10C-int LTR ERVK -5634 1947 1885 3 761 311 175 0 0 chr12 23188177 23188234 -98069296 - MMERVK10C-int LTR ERVK -4261 1145 1089 3 761 305 259 148 40 chr12 23188221 23188370 -98069160 - MMERVK10C-int LTR ERVK -4587 819 524 3 761 679 169 238 45 chr12 23188366 23188610 -98068920 - RMER16-int LTR ERVK -4880 526 312 3 761 1029 161 4 86 chr12 23188694 23188938 -98068592 - MMERVK10C-int LTR ERVK -6629 952 729 3 761 2575 82 9 12 chr12 23188936 23189280 -98068250 - MMERVK10C-int LTR ERVK -7238 343 1 3 761 3315 55 50 2 chr12 23189280 23189485 -98068045 - RLTR10C LTR ERVK 0 436 233 3 761 180 0 0 0 chr12 23189485 23189505 -98068025 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 761 3315 55 50 2 chr12 23189505 23189715 -98067815 - RLTR10C LTR ERVK -204 232 2 3 761 376 153 0 23 chr12 23190017 23190104 -98067426 + G-rich Low_complexity Low_complexity 2 86 0 3 761 734 200 36 0 chr12 23190445 23190585 -98066945 + B1_Mus1 SINE Alu 3 147 -1 3 761 584 91 9 26 chr12 23190585 23190698 -98066832 + (TAAA)n Simple_repeat Simple_repeat 1 111 0 3 761 763 229 88 5 chr12 23191170 23191363 -98066167 + B3 SINE B2 3 211 -5 3 761 439 197 141 33 chr12 23191386 23191507 -98066023 + B1_Mus2 SINE Alu 1 134 -13 3 761 936 65 0 0 chr12 23191521 23191645 -98065885 + (GGGAGA)n Simple_repeat Simple_repeat 4 127 0 3 761 702 282 13 43 chr12 23193700 23193930 -98063600 + ID_B1 SINE B4 2 224 0 3 761 984 102 7 0 chr12 23193966 23194103 -98063427 + B1_Mus1 SINE Alu 1 138 -10 3 761 450 65 0 0 chr12 23194177 23194239 -98063291 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 761 265 368 49 0 chr12 23194283 23194446 -98063084 - L1MD LINE L1 -540 5819 5649 3 761 380 274 177 0 chr12 23194535 23194648 -98062882 - RSINE1 SINE B4 -29 136 4 3 761 3880 125 22 86 chr12 23194655 23195359 -98062171 + RMER17D2 LTR ERVK 1 647 -162 3 761 207 0 0 0 chr12 23195359 23195382 -98062148 + (CCA)n Simple_repeat Simple_repeat 2 24 0 3 761 3880 125 22 86 chr12 23195382 23195528 -98062002 + RMER17D2 LTR ERVK 648 796 -13 3 761 254 253 0 155 chr12 23195607 23195710 -98061820 - RMER21A LTR ERV1 -287 660 471 3 761 1176 178 182 143 chr12 23195639 23196079 -98061451 - MT2A LTR ERVL -71 462 6 3 761 520 273 14 0 chr12 23196085 23196228 -98061302 - L1MD LINE L1 -676 5566 5422 3 761 750 200 18 12 chr12 23196245 23196412 -98061118 + B3A SINE B2 1 168 -30 3 761 585 0 0 0 chr12 23196415 23196480 -98061050 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 761 561 242 67 62 chr12 23196548 23196742 -98060788 - B3 SINE B2 -20 196 2 3 761 1046 8 8 0 chr12 23196758 23196881 -98060649 + (TTTTC)n Simple_repeat Simple_repeat 2 125 0 3 761 216 0 0 0 chr12 23196881 23196904 -98060626 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 761 1065 82 0 0 chr12 23196904 23197038 -98060492 - B1_Mus1 SINE Alu -13 135 2 3 761 1353 78 5 30 chr12 23197085 23197283 -98060247 - B2_Mm2 SINE B2 0 195 3 3 761 283 269 9 88 chr12 23197319 23197433 -98060097 - RLTR25A LTR ERVK -476 627 523 3 761 762 149 14 41 chr12 23197334 23197481 -98060049 - B1_Mus1 SINE Alu 0 148 6 3 761 4137 56 4 0 chr12 23197536 23198037 -98059493 + RLTR1C LTR ERV1 1 503 0 3 761 753 252 39 19 chr12 23198431 23198637 -98058893 - MTD LTR MaLR -14 405 196 3 761 753 260 66 0 chr12 23198675 23198871 -98058659 - B3 SINE B2 -7 209 1 3 761 779 208 24 34 chr12 23198871 23199067 -98058463 - MTD LTR MaLR -204 196 1 3 95 543 227 119 14 chr12 23199708 23199851 -98057679 + RSINE1 SINE B4 6 163 -2 3 762 558 0 0 0 chr12 23199855 23199917 -98057613 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 762 448 261 74 141 chr12 23200081 23200486 -98057044 - RMER10A LTR ERVL 0 442 65 3 762 3161 63 22 5 chr12 23200990 23201437 -98056093 - MURVY-LTR LTR ERV1 -64 455 1 3 762 209 298 76 0 chr12 23202000 23202090 -98055440 - MIRm SINE MIR -121 155 50 3 762 868 286 10 0 chr12 23202535 23202741 -98054789 - MTEa LTR MaLR -154 225 18 3 762 331 252 214 14 chr12 23202893 23202975 -98054555 + ID_B1 SINE B4 51 149 -75 3 762 988 130 7 0 chr12 23202975 23203121 -98054409 - B1_Mus1 SINE Alu -1 147 1 3 762 331 252 214 14 chr12 23203121 23203183 -98054347 + ID_B1 SINE B4 150 224 0 3 762 347 164 81 14 chr12 23203409 23203483 -98054047 + MTB_Mm LTR MaLR 2 80 -327 3 762 1835 206 117 46 chr12 23203483 23204299 -98053231 - RLTR13D6 LTR ERVK 0 893 10 4 762 2084 99 9 6 chr12 23204305 23204631 -98052899 + MTB LTR MaLR 74 400 0 4 762 480 262 68 6 chr12 23204770 23204931 -98052599 + B4A SINE B4 3 173 -119 4 762 252 222 0 0 chr12 23205092 23205146 -98052384 - MLT1C LTR MaLR -362 105 52 4 762 2177 103 33 3 chr12 23205146 23205448 -98052082 + RLTR10E LTR ERVK 1 311 0 4 762 11180 132 36 33 chr12 23205448 23207381 -98050149 + MMERVK10C-int LTR ERVK 1 1939 -5642 4 762 231 162 0 56 chr12 23207394 23207466 -98050064 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 4 762 249 54 25 86 chr12 23207468 23207549 -98049981 + A-rich Low_complexity Low_complexity 5 80 0 4 762 21836 86 4 9 chr12 23207563 23210781 -98046749 + MMERVK10C-int LTR ERVK 4453 7680 0 4 762 2118 113 33 3 chr12 23210781 23211083 -98046447 + RLTR10E LTR ERVK 1 311 0 4 762 1016 93 0 7 chr12 23211425 23211576 -98045954 + (TTTC)n Simple_repeat Simple_repeat 1 150 0 4 762 1390 23 17 0 chr12 23211614 23211791 -98045739 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 762 262 286 60 0 chr12 23211822 23211840 -98045690 - ID_B1 SINE B4 -127 97 9 4 762 291 227 45 0 chr12 23211840 23211906 -98045624 - ID4_ SINE ID -6 77 9 4 762 762 204 0 14 chr12 23211927 23212066 -98045464 - B1_Mur1 SINE Alu 0 149 13 4 762 879 144 7 0 chr12 23212125 23212271 -98045259 + B1_Mus1 SINE Alu 1 147 -1 4 762 476 315 40 7 chr12 23212390 23212540 -98044990 - RSINE1 SINE B4 0 165 11 4 762 380 243 51 51 chr12 23212686 23212842 -98044688 - MTD-int LTR MaLR -1102 156 1 4 762 672 210 100 15 chr12 23212848 23213177 -98044353 - MTD LTR MaLR 0 419 12 4 762 3132 231 48 120 chr12 23213236 23213983 -98043547 + MTD-int LTR MaLR 136 848 -410 4 762 1000 99 14 0 chr12 23213983 23214125 -98043405 + B1_Mm SINE Alu 4 147 0 4 762 3132 231 48 120 chr12 23214125 23214580 -98042950 + MTD-int LTR MaLR 849 1252 -6 4 762 1211 198 75 0 chr12 23214593 23214861 -98042669 + MTD LTR MaLR 25 312 -107 4 762 2702 128 40 34 chr12 23215156 23215633 -98041897 - RLTR45 LTR ERVK 0 482 3 4 762 7858 99 5 5 chr12 23215635 23216778 -98040752 - RLTR45-int LTR ERVK -413 7804 6331 4 762 3585 69 22 42 chr12 23217123 23217623 -98039907 - RLTR45-int LTR ERVK -5596 1648 1159 4 762 1680 78 78 4 chr12 23217794 23218051 -98039479 - RLTR45-int LTR ERVK -6067 1177 902 4 762 1863 70 0 0 chr12 23218179 23218409 -98039121 - RLTR45-int LTR ERVK -6334 910 681 4 762 1124 49 0 40 chr12 23218755 23218905 -98038625 - RLTR45-int LTR ERVK -6552 692 549 4 762 3817 112 26 28 chr12 23219670 23220242 -98037288 - RLTR45-int LTR ERVK -6673 571 1 4 762 2857 129 22 35 chr12 23220242 23220730 -98036800 - RLTR45 LTR ERVK 0 482 1 4 762 559 129 30 178 chr12 23220850 23220897 -98036633 + URR1A DNA MER1_type 68 101 -125 4 762 1086 90 7 0 chr12 23220897 23221041 -98036489 + B1_Mus2 SINE Alu 1 145 -2 4 762 559 129 30 178 chr12 23221041 23221162 -98036368 + URR1A DNA MER1_type 102 211 -15 4 762 320 267 0 125 chr12 23221600 23221720 -98035810 - PB1D10 SINE Alu 0 117 13 4 762 512 255 20 40 chr12 23221919 23222070 -98035460 - B1F SINE Alu 0 149 2 4 762 1263 212 165 6 chr12 23222097 23222419 -98035111 - ORR1D1 LTR MaLR -1 373 1 4 762 227 297 53 26 chr12 23222772 23222886 -98034644 - L2c LINE L2 -53 3334 3218 4 762 1880 153 59 24 chr12 23223435 23223810 -98033720 - MTC LTR MaLR -33 388 1 4 762 4331 17 2 0 chr12 23223887 23224365 -98033165 + LTRIS_Mm LTR ERV1 1 479 -3 4 762 1036 101 0 39 chr12 23224855 23225009 -98032521 - B1_Mus1 SINE Alu 0 148 1 4 762 622 190 203 89 chr12 23225824 23226026 -98031504 + URR1B DNA MER1_type 1 225 0 4 762 1125 202 9 0 chr12 23226064 23226277 -98031253 - B3 SINE B2 0 216 2 4 762 2972 31 7 88 chr12 23227087 23227509 -98030021 + RLTR10 LTR ERVK 1 388 -2 4 762 17292 22 3 2 chr12 23227521 23229463 -98028067 + RLTR10-int LTR ERVK 41 1984 -3 4 762 2941 36 7 88 chr12 23229465 23229887 -98027643 + RLTR10 LTR ERVK 1 388 -2 4 762 229 291 0 44 chr12 23230015 23230105 -98027425 + MLT1K LTR MaLR 510 595 0 4 762 1243 280 13 35 chr12 23232326 23232359 -98025171 + ORR1D2 LTR MaLR 1 33 -337 4 762 1191 131 91 10 chr12 23232359 23232568 -98024962 - URR1A DNA MER1_type 0 226 1 4 762 1243 280 13 35 chr12 23232568 23232908 -98024622 + ORR1D2 LTR MaLR 34 366 -4 4 762 232 345 35 0 chr12 23233082 23233198 -98024332 - RMER15 LTR ERVL -16 559 440 4 762 1589 239 45 2 chr12 23233198 23233596 -98023934 + MTD LTR MaLR 2 416 -3 4 762 555 261 91 33 chr12 23234639 23234849 -98022681 - ID_B1 SINE B4 0 224 3 4 762 359 256 183 15 chr12 23235518 23235649 -98021881 + B3A SINE B2 8 160 -38 4 762 426 20 0 0 chr12 23235668 23235719 -98021811 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 762 551 196 10 10 chr12 23235747 23235850 -98021680 + B1_Mur2 SINE Alu 7 109 -40 4 762 462 282 17 0 chr12 23236057 23236174 -98021356 + RSINE1 SINE B4 3 121 -44 4 762 1382 74 16 0 chr12 23236175 23236365 -98021165 + B2_Mm2 SINE B2 1 193 -2 4 762 31 26 0 0 chr12 23236458 23236496 -98021034 + AT_rich Low_complexity Low_complexity 1 38 0 4 762 207 146 0 0 chr12 23236527 23236568 -98020962 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 4 762 336 237 13 13 chr12 23237058 23237135 -98020395 + ID2 SINE ID 2 78 -5 4 762 552 15 0 0 chr12 23237345 23237410 -98020120 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 762 186 302 122 44 chr12 23237450 23237540 -98019990 - L2b LINE L2 -51 3324 3228 4 762 275 300 102 90 chr12 23237550 23237806 -98019724 - ORR1E LTR MaLR 0 359 101 4 762 980 163 0 0 chr12 23238093 23238240 -98019290 - B1_Mur1 SINE Alu 0 149 3 4 762 304 240 13 39 chr12 23238327 23238405 -98019125 + RSINE1 SINE B4 50 125 -40 4 762 1367 100 21 0 chr12 23238496 23238686 -98018844 + B2_Mm2 SINE B2 1 194 -1 4 762 2338 137 16 45 chr12 23239315 23239742 -98017788 - MTC LTR MaLR -6 415 1 4 762 456 290 9 0 chr12 23240774 23240881 -98016649 - RSINE1 SINE B4 -36 129 22 4 762 400 85 0 0 chr12 23241255 23241314 -98016216 + RMER6D LTR ERVK 1 59 -661 4 762 328 182 0 0 chr12 23241565 23241620 -98015910 + B3 SINE B2 70 124 -92 4 762 518 274 7 14 chr12 23242069 23242217 -98015313 - B1_Mm SINE Alu 0 147 1 4 762 611 37 12 0 chr12 23242397 23242479 -98015051 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 4 762 1363 204 89 87 chr12 23242621 23242977 -98014553 + MTD LTR MaLR 16 376 -43 4 762 719 175 33 53 chr12 23242977 23243128 -98014402 - B1_Mus1 SINE Alu 0 148 1 4 762 1363 204 89 87 chr12 23243128 23243174 -98014356 + MTD LTR MaLR 377 419 0 4 762 269 139 0 0 chr12 23243395 23243438 -98014092 + MTC LTR MaLR 92 134 -287 4 762 516 59 23 12 chr12 23243976 23244062 -98013468 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 762 628 268 92 42 chr12 23244091 23244329 -98013201 - B4A SINE B4 -38 254 5 4 762 248 316 108 31 chr12 23245006 23245228 -98012302 + L2b LINE L2 3004 3242 -184 4 762 567 237 50 128 chr12 23245233 23245451 -98012079 + ID_B1 SINE B4 2 202 -22 4 762 241 215 139 0 chr12 23245676 23245755 -98011775 - MER5A1 DNA MER1_type -64 102 13 4 762 763 90 194 0 chr12 23246250 23246384 -98011146 + B2_Mm1a SINE B2 1 160 -33 4 762 195 42 0 0 chr12 23246384 23246408 -98011122 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 4 762 449 204 37 0 chr12 23246650 23246758 -98010772 - Lx3B LINE L1 0 6973 6862 4 762 1088 68 0 0 chr12 23247298 23247431 -98010099 + B1_Mm SINE Alu 3 135 -12 4 762 1011 123 0 0 chr12 23247432 23247595 -98009935 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 4 762 207 0 0 0 chr12 23248210 23248233 -98009297 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 762 423 239 87 29 chr12 23248233 23248371 -98009159 - B1F SINE Alu -3 146 1 4 762 2197 57 30 2 chr12 23248787 23249102 -98008428 - IAPLTR2b LTR ERVK -17 310 1 4 762 441 326 22 0 chr12 23249102 23249285 -98008245 - MER63C DNA AcHobo -53 877 691 4 762 746 312 130 17 chr12 23249356 23249764 -98007766 - MER63C DNA AcHobo -237 693 240 4 762 747 179 21 7 chr12 23250030 23250171 -98007359 + B1_Mur1 SINE Alu 1 143 -6 4 762 636 219 66 0 chr12 23250368 23250505 -98007025 + B3 SINE B2 56 201 -15 4 762 234 286 0 0 chr12 23250526 23250624 -98006906 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 762 362 209 10 148 chr12 23250684 23250718 -98006812 + B3 SINE B2 66 99 -117 4 762 926 91 27 27 chr12 23250718 23250865 -98006665 + B1_Mus1 SINE Alu 2 148 0 4 762 362 209 10 148 chr12 23250865 23250931 -98006599 + B3 SINE B2 100 152 -64 4 762 561 214 9 0 chr12 23251821 23251933 -98005597 - PB1D9 SINE Alu -6 114 2 4 762 1104 89 0 20 chr12 23251983 23252132 -98005398 + B1_Mus2 SINE Alu 2 147 0 4 762 1522 219 83 8 chr12 23252548 23252934 -98004596 - MTD LTR MaLR 0 419 5 4 762 455 338 34 13 chr12 23253160 23253397 -98004133 - MER46C DNA MER2_type -1 337 96 4 762 764 111 7 0 chr12 23253438 23253582 -98003948 + (TG)n Simple_repeat Simple_repeat 2 146 0 4 762 1611 47 0 10 chr12 23258007 23258202 -97999328 - B2_Mm1a SINE B2 0 193 1 4 762 308 245 25 213 chr12 23258778 23258980 -97998550 - RSINE1 SINE B4 0 165 2 4 762 247 378 15 30 chr12 23260390 23260521 -97997009 - MER3 DNA MER1_type -78 131 3 4 762 201 262 12 59 chr12 23260761 23260846 -97996684 - MER5B DNA MER1_type -66 112 32 4 762 456 282 35 30 chr12 23261243 23261431 -97996099 - B3A SINE B2 -5 190 3 4 762 208 49 23 47 chr12 23261701 23261744 -97995786 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 4 762 987 127 0 0 chr12 23261766 23261908 -97995622 - B1_Mm SINE Alu -5 142 1 4 762 816 191 173 0 chr12 23261960 23262185 -97995345 + Lx9 LINE L1 7381 7644 0 4 762 715 251 70 28 chr12 23262521 23262734 -97994796 - ID_B1 SINE B4 -2 222 1 4 762 229 273 202 8 chr12 23263049 23263178 -97994352 + Lx8 LINE L1 6978 7131 -342 4 762 280 133 33 0 chr12 23263247 23263307 -97994223 + GA-rich Low_complexity Low_complexity 3 64 0 4 762 21 36 0 0 chr12 23263443 23263471 -97994059 + AT_rich Low_complexity Low_complexity 1 28 0 4 762 274 184 66 44 chr12 23263497 23263588 -97993942 + (CCCTAA)n Simple_repeat Simple_repeat 2 94 0 4 762 237 315 55 89 chr12 23263627 23263864 -97993666 + MT2A LTR ERVL 74 302 -231 4 762 4985 115 49 32 chr12 23264445 23264949 -97992581 - RMER17D LTR ERVK -2 887 365 4 762 189 0 0 0 chr12 23264949 23264970 -97992560 + (GGAGA)n Simple_repeat Simple_repeat 2 22 0 4 762 4985 115 49 32 chr12 23264970 23265337 -97992193 - RMER17D LTR ERVK -525 364 1 4 762 451 256 25 89 chr12 23265900 23266102 -97991428 - L1_Mur3 LINE L1 -4044 1836 1648 5 762 477 270 82 4 chr12 23266115 23266346 -97991184 - L1_Mur3 LINE L1 -4315 1562 1314 5 762 471 261 19 34 chr12 23266644 23266850 -97990680 - L1_Mur3 LINE L1 -6622 1106 904 5 762 2719 50 8 11 chr12 23268092 23268474 -97989056 + MTA_Mm LTR MaLR 16 396 0 5 762 600 39 0 0 chr12 23268474 23268548 -97988982 - RLTR9D LTR ERVK -329 74 1 5 762 274 335 126 16 chr12 23268550 23268741 -97988789 + MTD LTR MaLR 192 403 -16 5 762 279 79 0 0 chr12 23268753 23268791 -97988739 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 762 470 337 59 34 chr12 23268810 23269114 -97988416 + MTD-int LTR MaLR 24 361 -1219 5 762 6119 236 12 8 chr12 23269152 23270567 -97986963 - Lx4B LINE L1 -1 7057 5637 5 762 1286 326 33 58 chr12 23270577 23271296 -97986234 + MTD-int LTR MaLR 562 1262 -108 5 762 261 259 25 41 chr12 23271398 23271519 -97986011 - Lx4B LINE L1 -4 7054 6936 5 762 241 291 12 48 chr12 23271761 23271844 -97985686 - B3 SINE B2 -133 83 4 5 762 8123 196 97 27 chr12 23271939 23272088 -97985442 + MurSatRep1 Unknown Unknown 2 175 -1962 5 762 351 306 65 0 chr12 23272088 23272212 -97985318 - B1_Mur2 SINE Alu -17 132 1 5 762 8123 196 97 27 chr12 23272212 23273056 -97984474 + MurSatRep1 Unknown Unknown 176 1118 -1019 5 762 1366 81 11 0 chr12 23273056 23273242 -97984288 - B2_Mm1a SINE B2 -4 189 2 5 762 8123 196 97 27 chr12 23273242 23274241 -97983289 + MurSatRep1 Unknown Unknown 1119 2134 -3 5 762 249 312 28 28 chr12 23274351 23274493 -97983037 + MMSAT4 Satellite Satellite 27 168 0 5 762 510 285 38 31 chr12 23274378 23274666 -97982864 + MurSatRep1 Unknown Unknown 1832 2137 0 5 762 503 309 0 0 chr12 23274677 23274829 -97982701 + MMSAT4 Satellite Satellite 17 168 0 5 762 576 299 62 42 chr12 23274699 23275362 -97982168 + MurSatRep1 Unknown Unknown 1691 2045 -92 5 762 505 281 0 0 chr12 23275362 23275501 -97982029 + MMSAT4 Satellite Satellite 30 168 0 5 762 576 299 62 42 chr12 23275501 23275670 -97981860 + MurSatRep1 Unknown Unknown 2046 2136 -1 5 762 422 288 15 15 chr12 23275614 23275909 -97981621 + MMSAT4 Satellite Satellite 1 295 0 5 762 227 317 40 118 chr12 23275791 23275966 -97981564 + MurSatRep1 Unknown Unknown 1747 1921 -216 5 762 3025 89 0 2 chr12 23275966 23276372 -97981158 + L1_Mus1 LINE L1 6163 6567 0 5 762 382 297 69 48 chr12 23276372 23276688 -97980842 + MurSatRep1 Unknown Unknown 1832 2136 -1 5 762 232 296 56 49 chr12 23276623 23276765 -97980765 + MMSAT4 Satellite Satellite 20 162 -6 5 762 279 246 0 0 chr12 23276908 23276977 -97980553 + ORR1C2 LTR MaLR 302 370 -14 5 762 878 145 14 0 chr12 23277276 23277421 -97980109 + B1_Mus1 SINE Alu 2 148 0 5 762 1771 244 68 72 chr12 23277675 23278019 -97979511 - L1_Mur3 LINE L1 -3798 2082 1774 5 762 1139 55 0 27 chr12 23278019 23278168 -97979362 - B1_Mm SINE Alu -1 146 2 5 762 1771 246 70 61 chr12 23278168 23278805 -97978725 - L1_Mur3 LINE L1 -4107 1773 1087 5 762 465 236 53 24 chr12 23278790 23278959 -97978571 - L1_Mur3 LINE L1 -6507 1221 1048 5 762 693 0 0 0 chr12 23279518 23279595 -97977935 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 762 21 0 0 0 chr12 23279628 23279649 -97977881 + AT_rich Low_complexity Low_complexity 1 21 0 5 762 546 224 78 11 chr12 23279660 23279830 -97977700 - Lx2B LINE L1 -212 6796 6623 5 762 405 209 19 0 chr12 23279872 23279977 -97977553 + (TCTA)n Simple_repeat Simple_repeat 3 109 0 5 762 438 198 17 0 chr12 23279977 23280149 -97977381 + (TA)n Simple_repeat Simple_repeat 2 176 0 5 762 213 229 0 0 chr12 23280155 23280203 -97977327 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 5 762 258 105 0 0 chr12 23280236 23280274 -97977256 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 762 24 53 0 0 chr12 23280287 23280325 -97977205 + AT_rich Low_complexity Low_complexity 1 38 0 5 762 626 234 45 28 chr12 23280334 23280510 -97977020 - Lx2B LINE L1 -197 6803 6625 5 762 658 172 8 15 chr12 23280603 23280869 -97976661 + (TA)n Simple_repeat Simple_repeat 1 264 0 5 762 729 284 48 89 chr12 23281082 23281283 -97976247 + RLTR11A2 LTR ERVK 143 346 -181 5 762 1188 68 0 0 chr12 23281283 23281430 -97976100 + B1_Mm SINE Alu 1 147 0 5 762 729 284 48 89 chr12 23281430 23281564 -97975966 + RLTR11A2 LTR ERVK 347 464 -63 5 762 338 229 40 27 chr12 23281577 23281725 -97975805 + T-rich Low_complexity Low_complexity 5 154 0 5 762 425 165 25 8 chr12 23281953 23282075 -97975455 + (CA)n Simple_repeat Simple_repeat 1 124 0 5 762 241 207 24 0 chr12 23282094 23282176 -97975354 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 762 373 183 45 7 chr12 23282187 23282341 -97975189 + (CA)n Simple_repeat Simple_repeat 2 161 0 5 762 391 181 265 8 chr12 23282973 23283090 -97974440 + L1MC1 LINE L1 6187 6333 0 5 762 2315 91 41 6 chr12 23283100 23283441 -97974089 + L1_Mus3 LINE L1 6279 6631 -7 5 762 717 273 29 0 chr12 23283451 23283623 -97973907 + B3A SINE B2 1 177 -21 5 762 284 243 120 31 chr12 23284069 23284198 -97973332 + MIR SINE MIR 65 202 -66 5 762 238 268 14 14 chr12 23284784 23284856 -97972674 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 762 186 273 149 35 chr12 23287638 23287752 -97969778 - MIRc SINE MIR -125 143 17 5 762 261 250 167 0 chr12 23288307 23288391 -97969139 + PB1D10 SINE Alu 6 103 -14 5 762 853 174 7 0 chr12 23288393 23288537 -97968993 + B1_Mur4 SINE Alu 1 145 -5 5 762 756 211 47 42 chr12 23288586 23288799 -97968731 + ID_B1 SINE B4 3 216 -8 5 762 290 270 31 102 chr12 23289742 23289870 -97967660 + B4A SINE B4 108 226 -66 5 762 317 294 166 21 chr12 23289882 23290055 -97967475 + B3A SINE B2 2 195 -3 5 762 903 193 0 0 chr12 23290076 23290221 -97967309 + B1_Mur4 SINE Alu 1 145 -5 5 762 288 271 0 0 chr12 23290299 23290369 -97967161 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 762 2217 108 0 58 chr12 23290369 23290712 -97966818 + ORR1A2 LTR MaLR 1 323 -4 5 762 405 86 0 0 chr12 23290723 23290781 -97966749 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 762 837 0 0 0 chr12 23290781 23290874 -97966656 + (GAGAA)n Simple_repeat Simple_repeat 1 93 0 5 762 580 301 25 19 chr12 23291559 23291718 -97965812 - RSINE1 SINE B4 -5 160 1 5 762 372 279 54 8 chr12 23292188 23292318 -97965212 - MER33 DNA MER1_type 0 324 189 5 762 1038 171 37 5 chr12 23292369 23292586 -97964944 - URR1B DNA MER1_type -1 224 1 5 762 273 159 0 0 chr12 23292800 23292863 -97964667 + GA-rich Low_complexity Low_complexity 1 63 0 5 762 439 148 43 9 chr12 23295533 23295649 -97961881 + CT-rich Low_complexity Low_complexity 1 120 0 5 762 438 236 19 9 chr12 23296370 23296477 -97961053 - PB1D9 SINE Alu 0 120 13 5 762 676 249 32 42 chr12 23296664 23296853 -97960677 + B3 SINE B2 28 214 -2 5 762 856 84 0 0 chr12 23296926 23297045 -97960485 + B1_Mus1 SINE Alu 23 141 -7 5 762 242 29 0 28 chr12 23297045 23297081 -97960449 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 762 608 211 60 0 chr12 23297096 23297229 -97960301 + ID_B1 SINE B4 82 222 -2 5 762 240 137 0 0 chr12 23297433 23297484 -97960046 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 762 190 95 23 23 chr12 23297487 23297530 -97960000 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 762 634 187 47 31 chr12 23297540 23297667 -97959863 - B1_Mur3 SINE Alu -12 137 9 5 762 709 177 8 8 chr12 23297697 23297822 -97959708 - ID_B1 SINE B4 -8 216 92 5 762 12814 68 1 2 chr12 23297848 23300223 -97957307 - L1Md_F2 LINE L1 -12 6570 4199 5 762 1181 171 18 22 chr12 23301679 23301906 -97955624 + URR1A DNA MER1_type 1 226 0 5 762 191 197 145 84 chr12 23302638 23302721 -97954809 - MIRb SINE MIR -84 184 97 5 762 702 253 55 30 chr12 23302724 23302924 -97954606 + B4A SINE B4 2 206 -86 5 762 710 232 0 0 chr12 23303152 23303277 -97954253 + RSINE1 SINE B4 3 127 -38 5 762 267 295 79 18 chr12 23304107 23304221 -97953309 + MIRb SINE MIR 23 143 -125 5 762 2035 129 10 10 chr12 23304223 23304537 -97952993 - MTC LTR MaLR 0 421 108 5 762 598 209 63 21 chr12 23304540 23304682 -97952848 + B1_Mur3 SINE Alu 2 149 0 5 762 488 68 14 0 chr12 23304738 23304811 -97952719 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 762 592 231 17 0 chr12 23304811 23304928 -97952602 - MTC LTR MaLR -302 119 1 5 762 249 167 83 0 chr12 23306034 23306082 -97951448 + MTE2a LTR MaLR 1 52 -327 5 762 26 0 0 0 chr12 23306086 23306112 -97951418 + AT_rich Low_complexity Low_complexity 1 26 0 5 762 541 295 93 100 chr12 23306112 23306132 -97951398 + MTE2a LTR MaLR 12 30 -389 5 762 595 251 135 11 chr12 23306132 23306317 -97951213 - B3 SINE B2 -6 210 3 5 762 541 295 93 100 chr12 23306317 23306345 -97951185 + MTE2a LTR MaLR 31 48 -371 5 762 914 159 14 0 chr12 23306345 23306490 -97951040 - B1_Mus1 SINE Alu -1 147 1 5 762 541 295 93 100 chr12 23306490 23306521 -97951009 + MTE2a LTR MaLR 49 77 -342 5 762 1237 173 9 14 chr12 23306521 23306744 -97950786 + URR1B DNA MER1_type 1 222 -3 5 762 633 226 166 111 chr12 23306744 23307072 -97950458 + MTE2a LTR MaLR 35 417 -2 5 762 227 296 136 0 chr12 23308816 23308897 -97948633 + PB1D10 SINE Alu 12 103 -14 5 762 771 193 0 20 chr12 23308899 23309047 -97948483 + B1_Mur4 SINE Alu 1 145 -5 5 762 794 223 28 42 chr12 23309076 23309291 -97948239 + ID_B1 SINE B4 3 214 -10 5 762 634 284 14 72 chr12 23310200 23310409 -97947121 + B4A SINE B4 24 220 -72 5 762 481 323 30 0 chr12 23310426 23310590 -97946940 + B3A SINE B2 2 170 -28 5 762 1637 31 0 5 chr12 23310612 23310804 -97946726 + B2_Mm1a SINE B2 2 192 -1 5 762 850 186 0 7 chr12 23310835 23310981 -97946549 + B1_Mur4 SINE Alu 1 145 -5 5 762 264 285 0 0 chr12 23311059 23311210 -97946320 + (TG)n Simple_repeat Simple_repeat 2 152 0 5 762 2253 85 3 70 chr12 23311243 23311585 -97945945 + ORR1A2 LTR MaLR 1 319 -8 5 762 333 0 0 0 chr12 23311596 23311633 -97945897 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 762 500 310 37 19 chr12 23312331 23312492 -97945038 - RSINE1 SINE B4 -1 164 1 5 762 206 167 0 40 chr12 23312513 23312588 -97944942 + A-rich Low_complexity Low_complexity 1 72 0 5 762 1984 44 12 0 chr12 23313018 23313267 -97944263 - RLTR13B1 LTR ERVK 0 893 642 5 762 30450 243 25 23 chr12 23313268 23320440 -97937090 - MMERGLN-int LTR ERV1 -305 7251 1 5 762 2062 205 22 44 chr12 23320440 23320899 -97936631 - RLTR1D LTR ERV1 0 605 157 5 762 669 13 0 0 chr12 23322021 23322099 -97935431 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 762 441 0 0 0 chr12 23322099 23322147 -97935383 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 762 355 218 10 10 chr12 23323105 23323207 -97934323 + CT-rich Low_complexity Low_complexity 3 104 0 5 762 693 253 37 27 chr12 23323414 23323601 -97933929 + B3 SINE B2 28 216 0 5 762 874 70 0 0 chr12 23323678 23323792 -97933738 + B1_Mm SINE Alu 24 137 -10 6 762 242 29 0 28 chr12 23323792 23323828 -97933702 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 762 352 261 77 17 chr12 23323828 23323945 -97933585 + ID_B1 SINE B4 74 197 -27 6 762 2521 111 0 45 chr12 23323945 23324321 -97933209 + RLTR10D LTR ERVK 1 359 0 6 762 8058 70 13 44 chr12 23324321 23325411 -97932119 + IAP-d-int LTR ERVK 1 1056 -5486 6 762 12846 66 1 1 chr12 23325409 23326981 -97930549 + IAP-d-int LTR ERVK 4970 6542 0 6 762 2278 107 0 59 chr12 23326981 23327338 -97930192 + RLTR10D LTR ERVK 1 336 -23 6 762 594 0 0 0 chr12 23327589 23327655 -97929875 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 762 632 187 47 31 chr12 23327695 23327822 -97929708 - B1_Mur3 SINE Alu -12 137 9 6 762 686 215 18 0 chr12 23327854 23327997 -97929533 - ID_B1 SINE B4 -7 217 73 6 762 1404 126 13 18 chr12 23329429 23329656 -97927874 + URR1A DNA MER1_type 1 226 0 6 762 647 197 44 22 chr12 23330339 23330474 -97927056 + B1_Mur3 SINE Alu 2 139 -10 6 762 342 0 0 0 chr12 23330475 23330513 -97927017 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 6 762 498 148 0 0 chr12 23330523 23330624 -97926906 + (GA)n Simple_repeat Simple_repeat 1 101 0 6 762 591 191 35 9 chr12 23330624 23330740 -97926790 - MTC LTR MaLR -302 119 1 6 763 273 151 74 6 chr12 23331835 23331889 -97925641 + MTE2a LTR MaLR 1 52 -369 6 763 21 0 0 0 chr12 23331891 23331912 -97925618 + AT_rich Low_complexity Low_complexity 1 21 0 6 763 771 228 99 11 chr12 23331924 23332115 -97925415 - B3 SINE B2 -6 210 3 6 763 929 152 14 0 chr12 23332143 23332288 -97925242 - B1_Mus1 SINE Alu -1 147 1 6 763 1334 163 5 9 chr12 23332319 23332542 -97924988 + URR1B DNA MER1_type 1 222 -3 6 763 812 198 170 106 chr12 23332545 23332856 -97924674 + MTE2a LTR MaLR 35 365 -14 6 763 294 291 58 0 chr12 23332981 23333067 -97924463 + RSINE1 SINE B4 47 137 -28 6 763 311 78 20 0 chr12 23333092 23333143 -97924387 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 763 653 66 11 0 chr12 23333143 23333233 -97924297 + (GA)n Simple_repeat Simple_repeat 1 92 0 6 763 32 0 0 0 chr12 23333922 23333954 -97923576 + AT_rich Low_complexity Low_complexity 1 32 0 6 763 237 221 0 0 chr12 23334009 23334077 -97923453 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 763 2454 136 5 5 chr12 23334924 23335331 -97922199 - RLTR9E LTR ERVK -2 407 1 6 763 510 92 0 26 chr12 23335331 23335409 -97922121 - ETnERV2-int LTR ERVK 0 7406 7331 6 763 16127 196 49 37 chr12 23335619 23339683 -97917847 - ETnERV2-int LTR ERVK -977 6429 1553 6 763 7551 208 55 17 chr12 23339697 23341318 -97916212 - ETnERV-int LTR ERVK -3389 2419 2 6 763 2680 118 5 14 chr12 23341319 23341732 -97915798 - RLTR9E LTR ERVK 0 409 1 6 763 1029 17 0 0 chr12 23341812 23341931 -97915599 + (TC)n Simple_repeat Simple_repeat 1 119 0 6 763 567 84 0 0 chr12 23341935 23342018 -97915512 - B2_Mm2 SINE B2 -110 85 3 6 763 348 225 0 0 chr12 23342101 23342172 -97915358 + PB1D10 SINE Alu 40 110 -7 6 763 415 264 11 0 chr12 23342173 23342264 -97915266 + RSINE1 SINE B4 42 133 -32 6 763 427 261 22 22 chr12 23342249 23342386 -97915144 + B1F1 SINE Alu 13 149 0 6 763 366 195 25 25 chr12 23342417 23342496 -97915034 + B3 SINE B2 15 93 -123 6 763 399 98 0 0 chr12 23342527 23342588 -97914942 + (GGGGA)n Simple_repeat Simple_repeat 2 62 0 6 763 676 221 36 0 chr12 23342932 23343072 -97914458 + B1_Mus1 SINE Alu 3 147 -1 6 763 24 0 0 0 chr12 23343077 23343101 -97914429 + AT_rich Low_complexity Low_complexity 1 24 0 6 763 749 238 85 0 chr12 23343570 23343759 -97913771 + B3 SINE B2 3 207 -9 6 763 442 197 157 33 chr12 23343786 23343907 -97913623 + B1_Mur2 SINE Alu 1 136 -13 6 763 1023 32 0 0 chr12 23343913 23344036 -97913494 + (GA)n Simple_repeat Simple_repeat 2 124 0 6 763 270 143 0 0 chr12 23344196 23344259 -97913271 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 6 763 249 98 0 0 chr12 23344278 23344319 -97913211 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 763 1367 189 104 69 chr12 23346301 23346373 -97911157 + RMER17D2 LTR ERVK 253 321 -488 6 763 981 50 0 21 chr12 23346373 23346516 -97911014 + (TCTCC)n Simple_repeat Simple_repeat 2 141 0 6 763 1367 189 104 69 chr12 23346516 23346875 -97910655 + RMER17D2 LTR ERVK 322 699 -110 6 763 511 200 20 0 chr12 23346868 23346968 -97910562 - MT2A LTR ERVL -340 193 92 6 763 537 207 74 0 chr12 23346999 23347120 -97910410 - MT2A LTR ERVL -403 130 1 6 763 552 252 20 0 chr12 23347121 23347268 -97910262 - L1MD LINE L1 -676 5566 5417 6 763 707 215 22 17 chr12 23347282 23347462 -97910068 + B3A SINE B2 1 181 -17 6 763 261 0 0 0 chr12 23347477 23347506 -97910024 + (CAA)n Simple_repeat Simple_repeat 1 29 0 6 763 488 256 78 66 chr12 23347602 23347769 -97909761 - B3 SINE B2 -46 170 2 6 763 286 164 25 91 chr12 23347775 23347786 -97909744 + (TTTG)n Simple_repeat Simple_repeat 4 13 0 6 763 753 60 26 0 chr12 23347786 23347902 -97909628 + (TTTTC)n Simple_repeat Simple_repeat 2 120 0 6 763 286 164 25 91 chr12 23347902 23347934 -97909596 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 763 1087 82 0 39 chr12 23347934 23348087 -97909443 - B1_Mus1 SINE Alu 0 148 2 6 763 286 164 25 91 chr12 23348087 23348163 -97909367 + (TTTG)n Simple_repeat Simple_repeat 1 73 0 6 763 270 292 8 74 chr12 23348163 23348285 -97909245 - RLTR25B LTR ERVK -473 555 442 6 763 719 143 0 70 chr12 23348183 23348326 -97909204 - B1_Mus1 SINE Alu -6 142 10 6 763 192 97 0 0 chr12 23348406 23348437 -97909093 + (T)n Simple_repeat Simple_repeat 1 31 0 6 763 734 264 44 19 chr12 23348786 23348991 -97908539 - MTD LTR MaLR -14 405 196 6 763 201 39 0 0 chr12 23349041 23349067 -97908463 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 6 763 647 268 30 0 chr12 23349072 23349236 -97908294 - B3 SINE B2 -42 174 6 6 763 648 192 26 26 chr12 23349279 23349434 -97908096 - MTD LTR MaLR -262 157 3 6 763 495 250 116 14 chr12 23350048 23350194 -97907336 + RSINE1 SINE B4 3 163 -2 6 763 450 278 104 57 chr12 23350356 23350482 -97907048 - RMER10A LTR ERVL -26 416 277 6 763 561 30 0 0 chr12 23350482 23350549 -97906981 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 763 450 278 104 57 chr12 23350549 23350758 -97906772 - RMER10A LTR ERVL -166 276 66 6 763 238 321 35 21 chr12 23351344 23351487 -97906043 + MLT1N2 LTR MaLR 413 557 -5 6 763 197 317 50 0 chr12 23351879 23351939 -97905591 - MIRm SINE MIR -121 155 93 6 763 906 290 9 0 chr12 23352414 23352638 -97904892 - MTEa LTR MaLR -153 226 1 6 763 245 234 109 0 chr12 23352771 23352835 -97904695 + ID_B1 SINE B4 51 121 -103 6 763 243 278 34 77 chr12 23352799 23352852 -97904678 + PB1D10 SINE Alu 5 51 -66 6 763 904 158 7 0 chr12 23352852 23352998 -97904532 - B1_Mus1 SINE Alu -1 147 1 6 763 243 278 34 77 chr12 23352998 23353016 -97904514 + PB1D10 SINE Alu 52 115 -1 6 763 243 159 0 0 chr12 23353016 23353060 -97904470 + ID_B1 SINE B4 181 224 0 6 763 259 282 43 161 chr12 23353192 23353267 -97904263 - MLT1B LTR MaLR -62 328 254 6 763 2608 93 39 8 chr12 23353267 23353655 -97903875 + MTB LTR MaLR 1 400 0 6 763 259 282 43 161 chr12 23353655 23353765 -97903765 - MLT1B LTR MaLR -137 253 165 6 763 559 217 129 21 chr12 23353794 23353987 -97903543 + B4A SINE B4 3 216 -76 6 763 3976 51 12 14 chr12 23354228 23354722 -97902808 - MT2_Mm LTR ERVL 0 493 1 6 763 1257 90 0 0 chr12 23354998 23355175 -97902355 + (TTCC)n Simple_repeat Simple_repeat 1 177 0 6 763 639 125 0 0 chr12 23355176 23355280 -97902250 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 6 763 1335 52 0 0 chr12 23355282 23355454 -97902076 + (TCTA)n Simple_repeat Simple_repeat 4 175 0 6 763 248 315 54 0 chr12 23355484 23355502 -97902028 - ID_B1 SINE B4 -127 97 1 6 763 276 270 40 0 chr12 23355502 23355576 -97901954 - ID4_ SINE ID -6 77 1 6 763 784 207 20 14 chr12 23355589 23355736 -97901794 - B1_Mur1 SINE Alu 0 149 2 6 763 883 151 7 0 chr12 23355784 23355930 -97901600 + B1_Mus1 SINE Alu 1 147 -1 6 763 552 272 40 7 chr12 23356057 23356205 -97901325 - RSINE1 SINE B4 -8 157 5 6 763 417 224 58 58 chr12 23356352 23356508 -97901022 - MTD-int LTR MaLR -1102 156 1 6 763 914 224 233 0 chr12 23356514 23356836 -97900694 - MTD LTR MaLR 0 419 23 6 763 209 33 33 0 chr12 23356838 23356868 -97900662 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 6 763 2835 251 41 63 chr12 23356932 23357839 -97899691 + MTC-int LTR MaLR 96 982 -276 6 763 1862 165 3 6 chr12 23357839 23358151 -97899379 + RLTR10E LTR ERVK 1 311 0 6 763 2921 225 61 67 chr12 23358151 23359023 -97898507 + MMERVK10C-int LTR ERVK 1 867 -6714 6 763 1616 191 172 40 chr12 23359006 23359333 -97898197 + MMERVK10C-int LTR ERVK 314 702 -4704 6 763 1715 26 0 0 chr12 23359333 23359525 -97898005 + B2_Mm1a SINE B2 1 192 -1 6 763 1616 191 172 40 chr12 23359525 23359644 -97897886 + MMERVK10C-int LTR ERVK 703 819 -4587 6 763 379 148 123 0 chr12 23359649 23359730 -97897800 + MMERVK10C-int LTR ERVK 1089 1179 -4227 6 763 13222 102 14 3 chr12 23359721 23361516 -97896014 + MMERVK10C-int LTR ERVK 1885 3698 -3883 6 763 764 251 30 10 chr12 23361516 23361717 -97895813 - RLTR46 LTR ERVK -115 205 1 6 763 2188 162 16 42 chr12 23361837 23362263 -97895267 - MTC LTR MaLR -6 415 1 6 763 480 259 9 0 chr12 23363317 23363425 -97894105 - RSINE1 SINE B4 -36 129 21 6 763 391 86 0 0 chr12 23363798 23363856 -97893674 + RMER6D LTR ERVK 1 58 -662 6 763 307 200 0 0 chr12 23364108 23364168 -97893362 + B3 SINE B2 70 129 -87 6 763 542 279 0 13 chr12 23364609 23364758 -97892772 - B1_Mm SINE Alu 0 147 1 6 763 626 47 12 0 chr12 23364937 23365023 -97892507 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 6 763 1254 226 108 21 chr12 23365165 23365500 -97892030 + MTD LTR MaLR 16 379 -40 6 763 614 210 7 55 chr12 23365519 23365665 -97891865 - B1_Mus1 SINE Alu 0 148 10 6 763 311 122 0 0 chr12 23365667 23365716 -97891814 + MTD LTR MaLR 373 421 0 6 763 247 111 0 0 chr12 23365928 23365964 -97891566 + MTC LTR MaLR 92 127 -294 6 763 526 63 12 12 chr12 23366513 23366593 -97890937 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 763 600 276 92 42 chr12 23366622 23366860 -97890670 - B4A SINE B4 -38 254 5 6 763 226 326 59 22 chr12 23367561 23367696 -97889834 + L2b LINE L2 3022 3161 -214 6 763 552 296 9 87 chr12 23367771 23367989 -97889541 + ID_B1 SINE B4 2 202 -22 6 763 366 82 0 0 chr12 23368087 23368136 -97889394 + B2_Mm1t SINE B2 112 160 -33 6 763 576 0 0 0 chr12 23368136 23368200 -97889330 + (TAAA)n Simple_repeat Simple_repeat 3 66 0 6 763 411 204 37 9 chr12 23368442 23368551 -97888979 - Lx3B LINE L1 0 6973 6862 6 763 1127 75 7 0 chr12 23369089 23369235 -97888295 + B1_Mm SINE Alu 1 147 0 7 763 1155 81 0 0 chr12 23369238 23369398 -97888132 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 7 763 364 263 85 28 chr12 23370023 23370164 -97887366 - B1F SINE Alu 0 149 1 7 763 919 306 83 114 chr12 23370530 23371238 -97886292 - MER63C DNA AcHobo -5 925 240 7 763 763 179 21 7 chr12 23371504 23371645 -97885885 + B1_Mur1 SINE Alu 1 143 -6 7 763 617 234 85 16 chr12 23371789 23371989 -97885541 + B3 SINE B2 13 216 0 7 763 330 252 0 0 chr12 23371999 23372098 -97885432 + (TG)n Simple_repeat Simple_repeat 2 100 0 7 763 513 206 0 30 chr12 23372114 23372214 -97885316 + B3 SINE B2 3 99 -117 7 763 1019 123 0 0 chr12 23372214 23372360 -97885170 + B1_Mus1 SINE Alu 2 147 -1 7 763 364 159 16 0 chr12 23372391 23372454 -97885076 + B3 SINE B2 89 152 -64 7 763 555 214 9 0 chr12 23373343 23373455 -97884075 - PB1D9 SINE Alu -6 114 2 7 763 1104 89 0 20 chr12 23373505 23373654 -97883876 + B1_Mus2 SINE Alu 2 147 0 7 763 1477 215 100 8 chr12 23374070 23374450 -97883080 - MTD LTR MaLR 0 419 5 7 763 1338 51 80 0 chr12 23374622 23374797 -97882733 + B2_Mm2 SINE B2 2 190 -5 7 763 394 346 34 13 chr12 23374860 23375097 -97882433 - MER46C DNA MER2_type -1 337 96 7 763 777 183 0 14 chr12 23375120 23375264 -97882266 - B1_Mur3 SINE Alu -6 143 2 7 763 369 235 12 0 chr12 23375384 23375465 -97882065 + ID2 SINE ID 2 83 0 7 763 839 151 0 11 chr12 23375528 23375893 -97881637 + (TG)n Simple_repeat Simple_repeat 1 360 0 7 763 228 35 0 0 chr12 23377486 23377515 -97880015 + (CCCCG)n Simple_repeat Simple_repeat 4 32 0 7 763 483 82 0 0 chr12 23380876 23380949 -97876581 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 763 272 250 0 0 chr12 23381039 23381111 -97876419 - B4A SINE B4 -220 72 1 7 763 258 370 15 30 chr12 23382915 23383046 -97874484 - MER3 DNA MER1_type -78 131 3 7 763 275 316 31 0 chr12 23383111 23383209 -97874321 + MER5A1 DNA MER1_type 66 166 0 7 763 198 262 11 56 chr12 23383283 23383372 -97874158 - MER5B DNA MER1_type -62 116 32 7 763 484 243 18 9 chr12 23383845 23383957 -97873573 - B3A SINE B2 -83 115 3 7 763 268 88 17 17 chr12 23384228 23384286 -97873244 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 7 763 1021 106 0 7 chr12 23384300 23384443 -97873087 - B1_Mm SINE Alu -5 142 1 7 763 271 295 85 23 chr12 23384520 23384697 -97872833 + Kanga1b DNA Tc2 488 675 -104 7 763 345 47 0 0 chr12 23384844 23384887 -97872643 + (A)n Simple_repeat Simple_repeat 1 43 0 7 763 857 187 173 0 chr12 23384897 23385122 -97872408 + Lx9 LINE L1 7381 7644 0 7 763 712 252 76 24 chr12 23385451 23385662 -97871868 - ID_B1 SINE B4 -2 222 1 7 763 272 191 0 29 chr12 23386201 23386271 -97871259 + GA-rich Low_complexity Low_complexity 3 70 0 7 763 243 262 121 16 chr12 23386290 23386414 -97871116 + Lx8 LINE L1 7335 7471 -2 7 763 231 83 0 104 chr12 23386486 23386553 -97870977 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 7 763 266 339 34 68 chr12 23386592 23386829 -97870701 + MT2A LTR ERVL 74 302 -231 7 763 944 152 23 6 chr12 23387410 23387582 -97869948 - RMER17D LTR ERVK -2 887 713 7 763 1257 283 13 32 chr12 23387732 23387765 -97869765 + ORR1D2 LTR MaLR 1 30 -340 7 763 1234 134 81 9 chr12 23387765 23387976 -97869554 - URR1A DNA MER1_type 0 226 1 7 763 1257 283 13 32 chr12 23387976 23388315 -97869215 + ORR1D2 LTR MaLR 31 366 -4 7 763 1597 237 48 5 chr12 23388604 23389003 -97868527 + MTD LTR MaLR 1 416 -3 7 763 492 296 29 29 chr12 23390046 23390220 -97867310 - ID_B1 SINE B4 0 224 51 7 763 336 234 53 20 chr12 23390895 23390996 -97866534 + B3 SINE B2 8 117 -81 7 763 477 50 0 0 chr12 23391038 23391098 -97866432 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 763 517 216 10 10 chr12 23391127 23391230 -97866300 + B1_Mur2 SINE Alu 7 109 -40 7 763 455 291 17 0 chr12 23391437 23391554 -97865976 + RSINE1 SINE B4 3 121 -44 7 763 1381 78 16 0 chr12 23391555 23391747 -97865783 + B2_Mm2 SINE B2 1 195 0 7 763 24 53 0 0 chr12 23391833 23391871 -97865659 + AT_rich Low_complexity Low_complexity 1 38 0 7 763 207 146 0 0 chr12 23391902 23391943 -97865587 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 7 763 311 254 14 14 chr12 23392433 23392505 -97865025 + ID2 SINE ID 2 73 -10 7 763 354 23 0 0 chr12 23392720 23392763 -97864767 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 763 180 302 122 44 chr12 23392803 23392893 -97864637 - L2b LINE L2 -51 3324 3228 7 763 270 177 99 25 chr12 23392901 23392982 -97864548 - MTEa LTR MaLR 0 379 293 7 763 233 246 264 40 chr12 23393060 23393208 -97864322 - MTEa LTR MaLR -189 181 1 7 763 971 170 0 7 chr12 23393442 23393590 -97863940 - B1_Mur1 SINE Alu 0 149 3 7 763 271 253 13 39 chr12 23393677 23393755 -97863775 + RSINE1 SINE B4 50 125 -40 7 763 1339 109 16 0 chr12 23393843 23394035 -97863495 + B2_Mm2 SINE B2 1 195 0 7 763 2224 140 19 56 chr12 23394664 23394976 -97862554 - MTC LTR MaLR -6 415 107 7 763 4551 87 31 9 chr12 23394976 23395612 -97861918 - L1Md_F2 LINE L1 -1 6581 5932 7 763 2224 140 19 56 chr12 23395612 23395730 -97861800 - MTC LTR MaLR -315 106 1 7 763 519 278 71 0 chr12 23396766 23396892 -97860638 - RSINE1 SINE B4 -10 155 21 7 763 401 71 0 0 chr12 23397265 23397321 -97860209 + RMER6D LTR ERVK 1 56 -664 7 763 349 200 0 0 chr12 23397574 23397634 -97859896 + B3 SINE B2 70 129 -87 7 763 549 272 0 13 chr12 23398072 23398221 -97859309 - B1_Mm SINE Alu 0 147 1 7 763 591 62 20 10 chr12 23398389 23398487 -97859043 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 7 763 1301 219 92 82 chr12 23398625 23398981 -97858549 + MTD LTR MaLR 13 376 -43 7 763 711 175 33 53 chr12 23398981 23399132 -97858398 - B1_Mus1 SINE Alu 0 148 1 7 763 1301 219 92 82 chr12 23399132 23399178 -97858352 + MTD LTR MaLR 377 419 0 7 763 260 139 0 0 chr12 23399399 23399442 -97858088 + MTC LTR MaLR 92 134 -287 7 763 565 58 11 11 chr12 23399969 23400056 -97857474 + (TG)n Simple_repeat Simple_repeat 1 87 0 7 763 544 276 92 46 chr12 23400085 23400324 -97857206 - B4A SINE B4 -38 254 5 7 763 568 236 81 0 chr12 23400452 23400575 -97856955 + ETnERV2-int LTR ERVK 7070 7202 -204 7 763 279 316 108 31 chr12 23401006 23401228 -97856302 + L2b LINE L2 3004 3242 -184 7 763 555 276 9 87 chr12 23401233 23401451 -97856079 + ID_B1 SINE B4 2 202 -22 7 763 245 194 153 0 chr12 23401681 23401753 -97855777 - MER5A1 DNA MER1_type -71 95 13 7 763 1103 94 6 0 chr12 23402249 23402408 -97855122 + B2_Mm1a SINE B2 1 160 -33 7 763 504 0 0 0 chr12 23402408 23402464 -97855066 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 7 763 3471 28 2 0 chr12 23402660 23403055 -97854475 + MTA_Mm LTR MaLR 1 396 0 7 763 503 176 37 0 chr12 23403106 23403214 -97854316 - Lx3B LINE L1 0 6973 6862 7 763 362 56 37 0 chr12 23404451 23404505 -97853025 - RMER17D LTR ERVK -833 56 1 7 763 540 264 175 31 chr12 23405066 23405523 -97852007 - L1_Mur3 LINE L1 -4044 1836 1314 7 763 467 256 19 34 chr12 23405820 23406026 -97851504 - L1_Mur3 LINE L1 -6622 1106 904 7 763 295 369 63 16 chr12 23408136 23408326 -97849204 + MTD LTR MaLR 15 213 -206 7 763 1782 167 76 21 chr12 23408326 23408631 -97848899 - RLTR9D LTR ERVK -2 401 75 7 763 3319 28 10 5 chr12 23408631 23409025 -97848505 + MTA_Mm LTR MaLR 1 396 0 7 763 1782 167 76 21 chr12 23409025 23409099 -97848431 - RLTR9D LTR ERVK -329 74 1 7 763 255 312 134 41 chr12 23409101 23409295 -97848235 + MTD LTR MaLR 192 403 -16 7 763 450 36 0 0 chr12 23409307 23409363 -97848167 + (CAA)n Simple_repeat Simple_repeat 2 57 0 7 763 422 361 38 73 chr12 23409382 23409674 -97847856 + MTD-int LTR MaLR 24 331 -1249 7 763 180 0 0 0 chr12 23409675 23409695 -97847835 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 763 918 110 0 40 chr12 23409757 23409909 -97847621 - B1_Mus2 SINE Alu -1 146 1 7 763 6067 229 16 10 chr12 23409916 23411322 -97846208 - Lx4B LINE L1 -4 7054 5640 7 763 1167 330 35 60 chr12 23411337 23412055 -97845475 + MTD-int LTR MaLR 563 1262 -108 7 763 272 250 25 41 chr12 23412160 23412281 -97845249 - Lx4B LINE L1 -4 7054 6936 7 763 9327 193 38 31 chr12 23412698 23413815 -97843715 + MurSatRep1 Unknown Unknown 2 1126 -1011 7 763 1332 98 6 0 chr12 23413815 23413998 -97843532 - B2_Mm1a SINE B2 -8 185 2 7 763 9327 193 38 31 chr12 23413998 23414999 -97842531 + MurSatRep1 Unknown Unknown 1127 2135 -2 7 763 459 282 26 26 chr12 23415112 23415335 -97842195 + MMSAT4 Satellite Satellite 1 223 -5 7 763 576 310 56 34 chr12 23415136 23415592 -97841938 + MurSatRep1 Unknown Unknown 1691 2137 0 7 763 408 302 0 0 chr12 23415532 23415671 -97841859 + MMSAT4 Satellite Satellite 30 168 0 7 763 530 324 47 29 chr12 23415625 23416009 -97841521 + MurSatRep1 Unknown Unknown 1747 2137 0 7 763 449 280 11 11 chr12 23415952 23416175 -97841355 + MMSAT4 Satellite Satellite 1 223 0 7 763 497 310 72 44 chr12 23416164 23416768 -97840762 + MurSatRep1 Unknown Unknown 1691 2137 0 7 763 2913 94 0 12 chr12 23416813 23417222 -97840308 + L1_Mus1 LINE L1 6163 6566 -1 7 763 400 296 78 54 chr12 23417239 23417535 -97839995 + MurSatRep1 Unknown Unknown 1835 2137 0 7 763 311 306 28 24 chr12 23417478 23417677 -97839853 + MMSAT4 Satellite Satellite 1 199 0 7 763 252 295 0 0 chr12 23417828 23417906 -97839624 + ORR1C2 LTR MaLR 293 370 -14 7 763 869 146 28 0 chr12 23418203 23418347 -97839183 + B1_Mur4 SINE Alu 2 149 -1 7 763 2054 250 58 29 chr12 23418564 23419647 -97837883 - L1_Mur3 LINE L1 -3798 2082 1002 7 763 249 33 0 0 chr12 23420211 23420241 -97837289 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 763 211 211 42 0 chr12 23420242 23420313 -97837217 + (TTTA)n Simple_repeat Simple_repeat 1 74 0 7 763 653 210 52 8 chr12 23420326 23420495 -97837035 - Lx2B LINE L1 -176 6800 6625 7 763 194 105 26 0 chr12 23420568 23420606 -97836924 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 8 763 424 166 11 34 chr12 23420656 23420831 -97836699 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 8 763 564 302 44 82 chr12 23421014 23421225 -97836305 + RLTR11A2 LTR ERVK 134 346 -181 8 763 1213 55 0 0 chr12 23421225 23421371 -97836159 + B1_Mm SINE Alu 2 147 0 8 763 564 302 44 82 chr12 23421371 23421476 -97836054 + RLTR11A2 LTR ERVK 347 438 -89 8 763 394 248 19 13 chr12 23421487 23421642 -97835888 + (TTATA)n Simple_repeat Simple_repeat 2 157 0 8 763 207 100 0 0 chr12 23421661 23421691 -97835839 + (TTA)n Simple_repeat Simple_repeat 2 31 0 8 763 361 183 22 30 chr12 23421918 23422053 -97835477 + (CA)n Simple_repeat Simple_repeat 1 134 0 8 763 262 183 28 0 chr12 23422073 23422144 -97835386 + (CA)n Simple_repeat Simple_repeat 1 73 0 8 763 451 180 34 23 chr12 23422155 23422331 -97835199 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 763 2824 56 0 6 chr12 23422810 23423153 -97834377 - IAPLTR4 LTR ERVK -4 341 1 8 763 4411 210 15 14 chr12 23423153 23424027 -97833503 - IAPLTR3-int LTR ERVK -20 6801 5927 8 763 3445 88 0 4 chr12 23424010 23424466 -97833064 - MMERVK10C-int LTR ERVK -1367 6214 5761 8 763 3471 79 0 16 chr12 23424454 23424904 -97832626 - MMERVK10C-int LTR ERVK -1936 5645 5203 8 763 837 81 35 56 chr12 23425158 23425302 -97832228 - MMERVK10C-int LTR ERVK -2911 4670 4530 8 763 492 185 12 35 chr12 23425310 23425435 -97832095 - MMERVK10C-int LTR ERVK -2380 2464 2357 8 763 3190 152 163 2 chr12 23425440 23426047 -97831483 - ETnERV2-int LTR ERVK -3135 4271 3567 8 763 612 249 380 25 chr12 23426073 23426294 -97831236 - ETnERV2-int LTR ERVK -4653 2753 2454 8 763 475 212 88 0 chr12 23426307 23426420 -97831110 - RLTR45-int LTR ERVK -5077 1060 938 8 763 704 113 19 111 chr12 23426544 23426734 -97830796 - RLTR45-int LTR ERVK -4937 2307 2175 8 763 330 227 39 67 chr12 23426732 23426836 -97830694 - RLTR45-int LTR ERVK -5055 351 251 8 763 830 209 45 45 chr12 23426938 23427184 -97830346 - IAPLTR3-int LTR ERVK -5755 1066 821 8 763 743 131 23 23 chr12 23427183 23427316 -97830214 - IAPLTR3-int LTR ERVK -6686 135 3 8 763 2848 52 0 17 chr12 23427318 23427669 -97829861 - IAPLTR4 LTR ERVK 0 345 1 8 763 252 241 179 8 chr12 23427694 23427811 -97829719 + L1MC1 LINE L1 6012 6148 -196 8 763 366 198 265 8 chr12 23427838 23427955 -97829575 + L1MC1 LINE L1 6187 6333 0 8 763 2104 130 41 0 chr12 23427965 23428304 -97829226 + L1_Mus3 LINE L1 6279 6631 -7 8 763 651 274 24 0 chr12 23428312 23428476 -97829054 + B3A SINE B2 1 168 -30 8 763 238 265 115 18 chr12 23428938 23429060 -97828470 + MIR SINE MIR 67 208 -60 8 763 252 0 0 0 chr12 23429662 23429690 -97827840 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 763 477 0 0 0 chr12 23429690 23429742 -97827788 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 763 3041 86 29 109 chr12 23431564 23432088 -97825442 - RLTR45 LTR ERVK 0 482 1 8 763 207 0 0 0 chr12 23432103 23432126 -97825404 + (T)n Simple_repeat Simple_repeat 1 23 0 8 763 1218 41 0 13 chr12 23432126 23432275 -97825255 - B1_Mus2 SINE Alu 0 147 1 8 763 18361 46 4 3 chr12 23432277 23434447 -97823083 - RLTR45-int LTR ERVK -9 7235 5065 8 763 4065 79 35 20 chr12 23434440 23435033 -97822497 - RLTR45-int LTR ERVK -3258 3986 3385 8 763 12159 40 38 8 chr12 23435014 23436844 -97820686 - RLTR45-int LTR ERVK -4032 3212 1329 8 763 272 263 21 21 chr12 23437095 23437192 -97820338 - MMTV-int LTR ERVK -4744 2509 2413 8 763 1171 43 0 0 chr12 23437591 23437729 -97819801 - RLTR45-int LTR ERVK -6426 818 681 8 763 4664 68 88 14 chr12 23438027 23438671 -97818859 - RLTR45-int LTR ERVK -6552 692 1 8 763 284 53 0 0 chr12 23438671 23438709 -97818821 - RLTR45 LTR ERVK 0 482 445 8 763 19010 30 0 12 chr12 23438710 23441733 -97815797 - L1Md_A LINE L1 -2423 3460 481 8 763 280 310 8 42 chr12 23442673 23442791 -97814739 + MIRb SINE MIR 6 119 -149 8 763 309 303 28 0 chr12 23442798 23442907 -97814623 - PB1D7 SINE Alu -6 114 3 8 763 220 310 85 17 chr12 23443094 23443212 -97814318 - L2b LINE L2 -214 3161 3036 8 763 701 224 30 18 chr12 23443292 23443456 -97814074 + B3A SINE B2 3 168 -30 8 763 633 240 14 40 chr12 23444023 23444214 -97813316 - B3 SINE B2 0 195 15 8 763 370 221 61 76 chr12 23444250 23444382 -97813148 - B1F1 SINE Alu -7 142 13 8 763 439 212 12 0 chr12 23444367 23444447 -97813083 - RSINE1 SINE B4 -32 133 53 8 763 363 267 0 0 chr12 23444452 23444538 -97812992 - PB1D10 SINE Alu 0 117 32 8 763 658 60 0 0 chr12 23444613 23444697 -97812833 + B2_Mm2 SINE B2 3 86 -109 8 763 342 91 0 0 chr12 23444709 23444764 -97812766 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 763 447 130 0 0 chr12 23446048 23446125 -97811405 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 8 763 664 193 56 21 chr12 23446127 23446270 -97811260 - B1_Mur3 SINE Alu 0 149 2 8 763 1904 158 10 10 chr12 23446273 23446587 -97810943 + MTC LTR MaLR 108 421 0 8 763 225 250 0 0 chr12 23446806 23446858 -97810672 + C-rich Low_complexity Low_complexity 3 54 0 8 763 233 311 13 26 chr12 23447314 23447390 -97810140 + MER2 DNA MER2_type 8 82 -263 8 763 653 279 0 0 chr12 23447525 23447654 -97809876 - RSINE1 SINE B4 -34 131 3 8 763 695 267 50 25 chr12 23447875 23448075 -97809455 - B4A SINE B4 -86 206 2 8 763 198 0 0 0 chr12 23448126 23448148 -97809382 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 763 1264 157 13 18 chr12 23448913 23449140 -97808390 - URR1A DNA MER1_type 0 226 1 8 763 626 221 15 8 chr12 23450639 23450771 -97806759 + ID_B1 SINE B4 88 220 -4 8 763 575 234 39 46 chr12 23450795 23450925 -97806605 + B1_Mur3 SINE Alu 4 132 -17 8 763 201 39 0 0 chr12 23450940 23450966 -97806564 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 763 550 240 57 19 chr12 23451200 23451357 -97806173 - ID_B1 SINE B4 -2 222 60 8 763 795 61 0 0 chr12 23451361 23451459 -97806071 + B1_Mus2 SINE Alu 41 138 -9 8 763 789 228 38 27 chr12 23451538 23451723 -97805807 - B3 SINE B2 -2 214 28 8 763 352 238 67 29 chr12 23451914 23452018 -97805512 + PB1D9 SINE Alu 13 120 0 8 763 231 310 70 60 chr12 23451983 23452168 -97805362 + RLTR25A LTR ERVK 906 1092 -11 8 763 912 96 11 38 chr12 23452753 23452938 -97804592 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 763 204 143 0 0 chr12 23454678 23454720 -97802810 + (TCC)n Simple_repeat Simple_repeat 1 42 0 8 763 998 194 32 5 chr12 23454934 23455152 -97802378 + URR1B DNA MER1_type 1 224 -1 8 763 325 289 62 15 chr12 23455203 23455333 -97802197 + MER33 DNA MER1_type 189 324 0 8 763 315 277 0 0 chr12 23455799 23455864 -97801666 + RSINE1 SINE B4 1 65 -100 8 763 890 225 122 58 chr12 23455915 23456258 -97801272 + MT2A LTR ERVL 48 553 -48 8 763 4297 143 63 8 chr12 23456349 23456510 -97801020 - RMER17D2 LTR ERVK 0 809 643 8 763 186 43 0 0 chr12 23456510 23456533 -97800997 + (TGG)n Simple_repeat Simple_repeat 2 24 0 8 763 4297 143 63 8 chr12 23456533 23456805 -97800725 - RMER17D2 LTR ERVK -167 642 368 8 763 847 18 0 18 chr12 23456805 23456916 -97800614 + (GGAGA)n Simple_repeat Simple_repeat 3 111 0 8 763 4297 143 63 8 chr12 23456916 23457248 -97800282 - RMER17D2 LTR ERVK -442 367 2 8 763 372 301 177 0 chr12 23457255 23457368 -97800162 + RSINE1 SINE B4 4 136 -29 8 763 515 338 47 9 chr12 23457418 23457633 -97799897 + L1MD LINE L1 5597 5819 -540 8 763 843 10 0 0 chr12 23457685 23457781 -97799749 + (GA)n Simple_repeat Simple_repeat 2 97 0 8 763 1024 109 0 0 chr12 23457858 23457996 -97799534 - B1_Mus1 SINE Alu -10 138 1 8 763 759 277 13 43 chr12 23458028 23458258 -97799272 - ID_B1 SINE B4 0 224 2 8 763 225 326 75 43 chr12 23459209 23459302 -97798228 + RMER21A LTR ERV1 259 354 -593 8 763 1152 0 0 0 chr12 23460346 23460474 -97797056 + (TCTCCC)n Simple_repeat Simple_repeat 6 133 0 8 763 481 205 157 33 chr12 23460484 23460605 -97796925 - B1_Mur2 SINE Alu -13 136 1 8 763 719 239 88 5 chr12 23460631 23460824 -97796706 - B3 SINE B2 -5 211 3 8 763 273 352 77 54 chr12 23461075 23461243 -97796287 - MLT1F2 LTR MaLR -244 316 145 8 763 306 279 129 16 chr12 23461284 23461408 -97796122 - L1M4b LINE L1 -5427 1907 1770 8 763 722 187 43 7 chr12 23461413 23461553 -97795977 - B1_Mus1 SINE Alu -1 147 3 8 95 353 117 0 16 chr12 23461885 23461946 -97795584 + (TCCCC)n Simple_repeat Simple_repeat 2 61 0 8 764 306 114 0 0 chr12 23462518 23462562 -97794968 + URR1B DNA MER1_type 182 225 0 8 764 722 299 43 32 chr12 23462854 23463134 -97794396 - B4A SINE B4 -8 284 2 8 764 214 286 0 0 chr12 23463388 23463444 -97794086 + G-rich Low_complexity Low_complexity 1 56 0 8 764 2041 132 10 10 chr12 23463659 23463973 -97793557 - MTC LTR MaLR 0 421 108 8 764 699 200 56 21 chr12 23463976 23464119 -97793411 + B1_Mur3 SINE Alu 2 149 0 8 764 273 167 0 0 chr12 23464123 23464177 -97793353 + GA-rich Low_complexity Low_complexity 4 57 0 8 764 822 48 0 0 chr12 23465602 23465705 -97791825 + (TC)n Simple_repeat Simple_repeat 2 104 0 8 764 631 83 0 0 chr12 23465705 23465789 -97791741 - B2_Mm2 SINE B2 -109 86 3 8 764 391 244 0 0 chr12 23465871 23465957 -97791573 + PB1D10 SINE Alu 32 117 0 8 764 410 226 24 12 chr12 23465951 23466036 -97791494 + RSINE1 SINE B4 42 127 -38 8 764 477 231 65 16 chr12 23466041 23466164 -97791366 + B1F1 SINE Alu 21 149 0 8 764 633 232 16 42 chr12 23466205 23466396 -97791134 + B3 SINE B2 15 195 0 8 764 180 348 142 24 chr12 23466698 23466910 -97790620 + L2c LINE L2 2928 3164 -223 8 764 275 321 37 9 chr12 23467090 23467197 -97790333 + PB1D7 SINE Alu 5 114 -6 8 764 335 325 8 41 chr12 23467204 23467326 -97790204 - MIRb SINE MIR -149 119 2 8 764 337 325 101 58 chr12 23468242 23468500 -97789030 + L1MD2 LINE L1 6084 6352 -7 8 764 715 303 43 32 chr12 23468514 23468794 -97788736 + B4A SINE B4 2 284 -8 8 764 894 159 172 16 chr12 23469081 23469273 -97788257 - URR1B DNA MER1_type 0 225 4 8 764 259 344 91 19 chr12 23469927 23470081 -97787449 - RMER15 LTR ERVL -6 569 405 8 764 281 257 3 29 chr12 23470322 23470422 -97787108 - MT2A LTR ERVL -496 105 9 8 764 3593 60 36 6 chr12 23470825 23471293 -97786237 - RLTR45 LTR ERVK 0 482 1 8 764 781 271 9 52 chr12 23471392 23471695 -97785835 - MTE2b LTR MaLR 0 379 35 8 764 858 191 164 0 chr12 23471695 23471884 -97785646 + URR1A DNA MER1_type 1 220 -6 8 764 330 309 41 53 chr12 23471745 23471916 -97785614 - CYRA11_Mm Unknown Y-chromosome -298 319 151 8 764 855 98 6 30 chr12 23472742 23472910 -97784620 + (GGGGA)n Simple_repeat Simple_repeat 2 165 0 8 764 745 171 39 0 chr12 23473251 23473380 -97784150 + B1_Mus1 SINE Alu 3 136 -12 8 764 590 60 0 12 chr12 23473380 23473464 -97784066 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 8 764 309 250 138 125 chr12 23473524 23473684 -97783846 + MLT1F2 LTR MaLR 132 293 -255 8 764 821 215 89 0 chr12 23473945 23474136 -97783394 + B3 SINE B2 3 210 -6 8 764 357 239 156 41 chr12 23474159 23474281 -97783249 + B1_Mur2 SINE Alu 1 136 -13 8 764 1049 98 17 6 chr12 23474287 23474462 -97783068 + (GA)n Simple_repeat Simple_repeat 2 178 0 9 764 294 162 0 0 chr12 23474619 23474693 -97782837 + CT-rich Low_complexity Low_complexity 2 75 0 9 764 276 111 0 0 chr12 23474693 23474738 -97782792 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 764 4782 58 3 2 chr12 23476658 23477244 -97780286 + LTRIS_Mus LTR ERV1 1 587 0 9 764 708 267 23 60 chr12 23477671 23477886 -97779644 + ID_B1 SINE B4 3 209 -15 9 764 186 43 0 0 chr12 23477891 23477914 -97779616 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 764 1069 109 0 0 chr12 23477937 23478075 -97779455 + B1_Mus1 SINE Alu 1 138 -10 9 764 397 353 77 0 chr12 23478221 23478428 -97779102 - L1MD LINE L1 -540 5819 5597 9 764 21 26 0 26 chr12 23478438 23478457 -97779073 + AT_rich Low_complexity Low_complexity 1 19 0 9 764 1172 75 0 0 chr12 23478457 23478604 -97778926 - B1_Mm SINE Alu 0 147 1 9 764 21 26 0 26 chr12 23478604 23478623 -97778907 + AT_rich Low_complexity Low_complexity 1 19 0 9 764 356 310 177 0 chr12 23478648 23478761 -97778769 - RSINE1 SINE B4 -29 136 4 9 764 3486 159 55 25 chr12 23478768 23479092 -97778438 + RMER17D2 LTR ERVK 1 334 -475 9 764 1086 78 18 0 chr12 23479092 23479259 -97778271 + (TCTCC)n Simple_repeat Simple_repeat 2 171 0 9 764 3486 159 55 25 chr12 23479259 23479613 -97777917 + RMER17D2 LTR ERVK 335 699 -110 9 764 570 204 52 14 chr12 23479598 23479737 -97777793 - MT2A LTR ERVL -237 364 92 9 764 588 175 97 0 chr12 23479738 23479852 -97777678 - MT2A LTR ERVL -403 130 6 9 764 537 250 26 0 chr12 23479853 23480005 -97777525 - L1MD LINE L1 -670 5572 5417 9 764 777 257 16 21 chr12 23480019 23480189 -97777341 + B3A SINE B2 1 171 -27 9 764 618 58 0 0 chr12 23480189 23480276 -97777254 + (CA)n Simple_repeat Simple_repeat 2 88 0 9 764 777 257 16 21 chr12 23480276 23480296 -97777234 + B3A SINE B2 172 190 -8 9 764 589 244 85 69 chr12 23480347 23480536 -97776994 - B3 SINE B2 -23 193 2 9 764 564 42 0 0 chr12 23480551 23480622 -97776908 + (TTTTC)n Simple_repeat Simple_repeat 3 73 0 9 764 984 119 21 0 chr12 23480623 23480766 -97776764 - B1_Mus1 SINE Alu -1 147 2 9 764 298 260 9 96 chr12 23480841 23480956 -97776574 - RLTR25A LTR ERVK -476 627 523 9 764 802 130 9 49 chr12 23480856 23481009 -97776521 - B1_Mus1 SINE Alu 0 150 6 9 764 929 226 38 33 chr12 23481442 23481653 -97775877 - MTD LTR MaLR -14 405 194 9 764 764 273 60 5 chr12 23481663 23481685 -97775845 - B3 SINE B2 -6 210 189 9 764 642 60 0 0 chr12 23481685 23481768 -97775762 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 9 764 764 273 60 5 chr12 23481768 23481944 -97775586 - B3 SINE B2 -28 188 1 9 764 746 210 108 22 chr12 23481954 23482139 -97775391 - MTD LTR MaLR -218 201 1 9 764 448 261 139 14 chr12 23482762 23482906 -97774624 + RSINE1 SINE B4 2 163 -2 9 764 206 275 191 32 chr12 23482945 23483039 -97774491 - MER5B DNA MER1_type -66 112 4 9 764 644 245 149 69 chr12 23483050 23483200 -97774330 - RMER10A LTR ERVL 0 442 267 9 764 1020 125 0 0 chr12 23483200 23483360 -97774170 + (GAA)n Simple_repeat Simple_repeat 2 161 0 9 764 644 245 149 69 chr12 23483360 23483559 -97773971 - RMER10A LTR ERVL -176 266 65 9 764 273 272 64 35 chr12 23484223 23484295 -97773235 + MLT1N2 LTR MaLR 413 493 -69 9 764 240 35 0 0 chr12 23484295 23484324 -97773206 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 764 273 272 64 35 chr12 23484324 23484392 -97773138 + MLT1N2 LTR MaLR 494 557 -5 9 764 213 286 54 0 chr12 23484785 23484841 -97772689 - MIRm SINE MIR -121 155 97 9 764 2197 98 13 3 chr12 23484940 23485258 -97772272 + RLTR1C LTR ERV1 1 321 -182 9 764 3073 23 6 0 chr12 23485258 23485602 -97771928 + ORR1A0 LTR MaLR 1 346 0 9 764 740 77 0 0 chr12 23485602 23485706 -97771824 + ORR1A0-int LTR MaLR 1 104 -1688 9 764 591 222 199 47 chr12 23485747 23485983 -97771547 + RLTR10A LTR ERVK 140 411 0 9 764 5160 70 22 1 chr12 23485983 23486711 -97770819 + ORR1A0-int LTR MaLR 89 831 -961 9 764 1938 177 148 82 chr12 23486710 23487259 -97770271 - RLTR6_Mm LTR ERV1 -69 585 1 9 764 7718 60 9 5 chr12 23487259 23488223 -97769307 + ORR1A0-int LTR MaLR 825 1792 0 9 764 3128 20 0 0 chr12 23488223 23488569 -97768961 + ORR1A0 LTR MaLR 1 346 0 9 764 1093 183 16 0 chr12 23488569 23488755 -97768775 + RLTR1D LTR ERV1 417 605 0 9 764 941 274 13 17 chr12 23489136 23489366 -97768164 - MTEa LTR MaLR -150 229 1 9 764 352 273 214 14 chr12 23489501 23489583 -97767947 + ID_B1 SINE B4 51 149 -75 9 764 1005 131 7 0 chr12 23489583 23489728 -97767802 - B1_Mus2 SINE Alu -1 146 1 9 764 352 273 214 14 chr12 23489728 23489790 -97767740 + ID_B1 SINE B4 150 224 0 9 764 382 277 65 119 chr12 23489868 23489991 -97767539 - MLT1B LTR MaLR -9 458 254 9 764 2628 86 39 10 chr12 23489991 23490380 -97767150 + MTB LTR MaLR 1 400 0 9 764 382 259 62 144 chr12 23490380 23490494 -97767036 - MLT1B LTR MaLR -137 253 160 9 764 584 268 104 36 chr12 23490519 23490740 -97766790 + B4A SINE B4 3 238 -54 9 764 867 61 0 0 chr12 23491229 23491343 -97766187 + (TTTC)n Simple_repeat Simple_repeat 4 117 0 9 764 1318 45 0 22 chr12 23491356 23491540 -97765990 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 9 764 249 350 68 0 chr12 23491560 23491589 -97765941 - ID_B1 SINE B4 -114 110 1 9 764 273 324 40 0 chr12 23491589 23491663 -97765867 - ID4_ SINE ID -6 77 1 9 764 894 201 0 0 chr12 23491678 23491822 -97765708 - B1_Mur1 SINE Alu -5 144 1 9 764 825 158 7 0 chr12 23491869 23492015 -97765515 + B1_Mus1 SINE Alu 1 147 -1 9 764 893 234 14 34 chr12 23492403 23492611 -97764919 - B3 SINE B2 -11 205 2 9 764 683 162 32 157 chr12 23492985 23493067 -97764463 + URR1B DNA MER1_type 3 100 -125 9 764 876 99 13 84 chr12 23493067 23493221 -97764309 + B1_Mm SINE Alu 5 147 0 9 764 683 120 11 207 chr12 23493221 23493348 -97764182 + URR1B DNA MER1_type 101 210 -15 9 764 226 353 0 0 chr12 23493711 23493779 -97763751 - tRNA-Ala-GCA tRNA tRNA -7 68 1 9 764 344 298 0 41 chr12 23493808 23493906 -97763624 - PB1D10 SINE Alu -11 106 13 9 764 461 288 13 40 chr12 23494105 23494257 -97763273 - B1F SINE Alu 0 149 2 9 764 1290 210 168 6 chr12 23494284 23494605 -97762925 - ORR1D1 LTR MaLR -1 373 1 9 764 251 293 74 34 chr12 23494958 23495116 -97762414 - L2c LINE L2 -53 3334 3183 9 764 2037 157 64 27 chr12 23495614 23495988 -97761542 - MTC LTR MaLR -33 388 1 9 764 240 158 0 0 chr12 23496048 23496105 -97761425 + (TGG)n Simple_repeat Simple_repeat 2 58 0 9 764 1159 74 0 39 chr12 23496539 23496693 -97760837 - B1_Mus1 SINE Alu 0 148 1 9 764 722 169 198 89 chr12 23497502 23497704 -97759826 + URR1B DNA MER1_type 2 225 0 9 764 1101 196 29 0 chr12 23497742 23497951 -97759579 - B3 SINE B2 0 216 2 9 764 248 304 0 61 chr12 23498897 23498995 -97758535 + MLT1K LTR MaLR 504 595 0 9 764 184 268 252 20 chr12 23499641 23499740 -97757790 + MIR3 SINE MIR 3 124 -84 9 764 1337 274 11 32 chr12 23501230 23501263 -97756267 + ORR1D2 LTR MaLR 1 30 -340 1 764 1164 153 76 9 chr12 23501263 23501474 -97756056 - URR1B DNA MER1_type 0 225 1 2 764 1337 274 11 32 chr12 23501474 23501814 -97755716 + ORR1D2 LTR MaLR 31 366 -4 1 764 1419 254 67 3 chr12 23502103 23502493 -97755037 + MTD LTR MaLR 2 416 -3 3 764 556 251 90 38 chr12 23503538 23503749 -97753781 - ID_B1 SINE B4 0 224 3 4 764 368 268 201 30 chr12 23504402 23504571 -97752959 + B3 SINE B2 8 205 -11 5 764 557 133 1 14 chr12 23504631 23504733 -97752797 + B1_Mur2 SINE Alu 9 109 -40 6 764 474 274 17 0 chr12 23504940 23505057 -97752473 + RSINE1 SINE B4 3 121 -44 7 764 1332 89 16 0 chr12 23505058 23505248 -97752282 + B2_Mm2 SINE B2 1 193 -2 8 764 22 70 0 0 chr12 23505341 23505384 -97752146 + AT_rich Low_complexity Low_complexity 1 43 0 9 764 219 146 0 0 chr12 23505409 23505450 -97752080 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 1 764 225 316 13 13 chr12 23505940 23506017 -97751513 + ID2 SINE ID 2 78 -5 1 764 369 0 0 0 chr12 23506226 23506267 -97751263 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 764 186 302 122 44 chr12 23506307 23506397 -97751133 - L2b LINE L2 -51 3324 3228 1 764 288 288 103 95 chr12 23506407 23506649 -97750881 - ORR1E LTR MaLR 0 359 116 1 764 1001 157 0 0 chr12 23506956 23507103 -97750427 - B1_Mur1 SINE Alu 0 149 3 1 764 250 280 13 13 chr12 23507190 23507266 -97750264 + RSINE1 SINE B4 50 125 -40 1 764 1382 104 0 5 chr12 23507356 23507549 -97749981 + B2_Mm2 SINE B2 1 192 -3 1 764 1783 136 23 16 chr12 23508178 23508485 -97749045 - MTC LTR MaLR -6 415 107 1 764 1250 41 0 0 chr12 23508512 23508659 -97748871 + B1_Mus2 SINE Alu 1 147 0 1 764 408 88 0 0 chr12 23508659 23508716 -97748814 + (A)n Simple_repeat Simple_repeat 1 57 0 2 764 596 101 10 20 chr12 23508716 23508817 -97748713 - MTC LTR MaLR -321 100 1 1 764 446 290 9 0 chr12 23509853 23509960 -97747570 - RSINE1 SINE B4 -36 129 22 2 764 381 103 0 0 chr12 23510331 23510389 -97747141 + RMER6D LTR ERVK 1 58 -662 2 764 344 200 0 0 chr12 23510641 23510701 -97746829 + B3 SINE B2 70 129 -87 2 764 532 296 0 0 chr12 23511150 23511292 -97746238 - B1_Mur3 SINE Alu -7 142 1 2 764 1033 29 15 0 chr12 23511472 23511609 -97745921 + (TCTA)n Simple_repeat Simple_repeat 2 140 0 2 764 1370 204 89 87 chr12 23511751 23512107 -97745423 + MTD LTR MaLR 16 376 -43 2 764 719 175 33 53 chr12 23512107 23512258 -97745272 - B1_Mus1 SINE Alu 0 148 1 2 764 1370 204 89 87 chr12 23512258 23512304 -97745226 + MTD LTR MaLR 377 419 0 2 764 200 297 0 0 chr12 23512427 23512491 -97745039 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 764 285 93 0 0 chr12 23512525 23512568 -97744962 + MTC LTR MaLR 92 134 -287 2 764 543 57 22 11 chr12 23513104 23513193 -97744337 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 764 604 281 92 42 chr12 23513222 23513460 -97744070 - B4A SINE B4 -38 254 5 3 764 282 316 108 31 chr12 23514136 23514358 -97743172 + L2b LINE L2 3004 3242 -184 3 764 508 247 50 128 chr12 23514363 23514581 -97742949 + ID_B1 SINE B4 2 202 -22 3 764 228 208 153 0 chr12 23514813 23514885 -97742645 - MER5A1 DNA MER1_type -71 95 13 3 764 782 69 200 0 chr12 23515378 23515508 -97742022 + B2_Mm1a SINE B2 5 160 -33 3 764 396 0 0 0 chr12 23515508 23515552 -97741978 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 3 764 507 176 37 0 chr12 23515788 23515896 -97741634 - Lx3B LINE L1 0 6973 6862 3 764 1093 90 7 0 chr12 23516436 23516580 -97740950 + B1_Mm SINE Alu 3 147 0 3 764 567 122 0 0 chr12 23516584 23516674 -97740856 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 3 764 1118 103 0 14 chr12 23516674 23516881 -97740649 + (GAAA)n Simple_repeat Simple_repeat 1 203 0 4 764 392 250 92 35 chr12 23517519 23517660 -97739870 - B1F SINE Alu 0 149 1 4 764 2191 61 29 3 chr12 23518081 23518392 -97739138 - IAPLTR2b LTR ERVK -8 319 1 4 764 442 297 34 11 chr12 23518392 23518568 -97738962 - MER63C DNA AcHobo -53 877 698 4 764 811 304 119 19 chr12 23518646 23519059 -97738471 - MER63C DNA AcHobo -237 693 240 4 764 759 179 21 7 chr12 23519326 23519467 -97738063 + B1_Mur1 SINE Alu 1 143 -6 4 764 621 226 66 0 chr12 23519663 23519800 -97737730 + B3 SINE B2 56 201 -15 4 764 249 234 0 0 chr12 23519821 23519885 -97737645 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 764 410 174 10 131 chr12 23519979 23520013 -97737517 + B3 SINE B2 66 99 -117 4 764 936 98 27 20 chr12 23520013 23520159 -97737371 + B1_Mus1 SINE Alu 2 148 0 4 764 410 174 10 131 chr12 23520159 23520223 -97737307 + B3 SINE B2 100 152 -64 4 764 524 232 9 0 chr12 23521113 23521225 -97736305 - PB1D9 SINE Alu -6 114 2 4 764 1120 89 0 20 chr12 23521275 23521424 -97736106 + B1_Mus2 SINE Alu 2 147 0 5 764 1554 217 83 8 chr12 23521841 23522227 -97735303 - MTD LTR MaLR 0 419 5 5 764 401 327 43 22 chr12 23522452 23522683 -97734847 - MER46C DNA MER2_type -7 331 96 5 764 745 187 0 21 chr12 23522704 23522846 -97734684 - B1_Mur3 SINE Alu -6 143 5 5 764 24 67 0 0 chr12 23522852 23522897 -97734633 + AT_rich Low_complexity Low_complexity 1 45 0 5 764 349 247 12 0 chr12 23522970 23523051 -97734479 + ID2 SINE ID 2 83 0 5 764 911 141 3 0 chr12 23523114 23523414 -97734116 + (TG)n Simple_repeat Simple_repeat 1 301 0 5 764 227 194 226 0 chr12 23524847 23524909 -97732621 + RLTR6_Mm LTR ERV1 1 76 -578 5 764 1998 119 240 44 chr12 23524954 23525429 -97732101 + RLTR6_Mm LTR ERV1 37 604 -50 5 764 66324 33 12 5 chr12 23525430 23533153 -97724377 + RLTR6-int LTR ERV1 1 7778 0 5 764 268 226 226 0 chr12 23533153 23533237 -97724293 + RLTR6_Mm LTR ERV1 1 103 -551 5 764 1934 115 248 44 chr12 23533260 23533715 -97723815 + RLTR6_Mm LTR ERV1 37 584 -70 5 764 1585 52 0 10 chr12 23536701 23536895 -97720635 - B2_Mm1a SINE B2 -1 192 1 5 764 423 68 0 0 chr12 23537449 23537508 -97720022 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 764 237 278 0 40 chr12 23537569 23537670 -97719860 - B4A SINE B4 -195 97 1 6 764 267 326 31 0 chr12 23539451 23539549 -97717981 + MER5A1 DNA MER1_type 66 166 0 6 764 198 262 11 56 chr12 23539623 23539712 -97717818 - MER5B DNA MER1_type -62 116 32 6 764 491 273 35 28 chr12 23540110 23540298 -97717232 - B3A SINE B2 -4 191 3 6 764 221 127 0 35 chr12 23540563 23540620 -97716910 + T-rich Low_complexity Low_complexity 1 55 0 6 764 962 124 0 0 chr12 23540642 23540779 -97716751 - B1_Mm SINE Alu -10 137 1 6 764 833 188 174 0 chr12 23540833 23541057 -97716473 + Lx9 LINE L1 7382 7644 0 6 764 715 255 66 24 chr12 23541389 23541602 -97715928 - ID_B1 SINE B4 -2 222 1 6 764 253 266 202 8 chr12 23541914 23542043 -97715487 + Lx8 LINE L1 6978 7131 -342 6 764 311 192 14 0 chr12 23542112 23542185 -97715345 + GA-rich Low_complexity Low_complexity 3 76 0 7 764 5081 122 48 26 chr12 23542899 23543403 -97714127 - RMER17D LTR ERVK -2 887 378 7 764 762 11 0 0 chr12 23543403 23543490 -97714040 + (GGAGA)n Simple_repeat Simple_repeat 2 88 0 7 764 5081 122 48 26 chr12 23543490 23543853 -97713677 - RMER17D LTR ERVK -512 377 2 7 764 467 273 210 42 chr12 23544414 23544862 -97712668 - L1_Mur3 LINE L1 -4044 1836 1314 7 764 433 266 19 34 chr12 23545159 23545365 -97712165 - L1_Mur3 LINE L1 -6622 1106 904 7 764 341 356 60 35 chr12 23546522 23546671 -97710859 + ORR1D-int LTR MaLR 132 285 -1295 7 764 327 25 0 0 chr12 23546671 23546711 -97710819 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 764 341 356 60 35 chr12 23546711 23546762 -97710768 + ORR1D-int LTR MaLR 286 337 -1243 7 764 914 116 0 39 chr12 23546834 23546987 -97710543 - B1_Mus2 SINE Alu 0 147 1 7 764 6073 227 19 12 chr12 23546994 23548402 -97709128 - Lx4B LINE L1 -4 7054 5637 7 764 1251 323 34 62 chr12 23548412 23549128 -97708402 + ORR1D-int LTR MaLR 562 1257 -113 7 764 282 262 9 36 chr12 23549239 23549350 -97708180 - Lx4A LINE L1 -4 7054 6947 7 764 243 279 12 48 chr12 23549603 23549686 -97707844 - B3 SINE B2 -133 83 4 7 764 8067 197 95 34 chr12 23549781 23549930 -97707600 + MurSatRep1 Unknown Unknown 2 175 -1962 8 764 308 323 65 0 chr12 23549930 23550054 -97707476 - B1_Mur2 SINE Alu -17 132 1 8 764 8067 197 95 34 chr12 23550054 23550900 -97706630 + MurSatRep1 Unknown Unknown 176 1118 -1019 8 764 1455 65 5 0 chr12 23550900 23551084 -97706446 - B2_Mm1a SINE B2 -7 186 2 8 764 8067 197 95 34 chr12 23551084 23551296 -97706234 + MurSatRep1 Unknown Unknown 1119 1329 -808 8 764 505 34 0 54 chr12 23551296 23551389 -97706141 + (TATAA)n Simple_repeat Simple_repeat 5 92 0 8 764 8067 197 95 34 chr12 23551389 23552190 -97705340 + MurSatRep1 Unknown Unknown 1330 2134 -3 8 764 428 261 36 36 chr12 23552387 23552526 -97705004 + MMSAT4 Satellite Satellite 30 168 0 8 764 584 302 60 40 chr12 23552431 23552783 -97704747 + MurSatRep1 Unknown Unknown 1691 2049 -88 8 764 430 302 0 0 chr12 23552723 23552862 -97704668 + MMSAT4 Satellite Satellite 30 168 0 8 764 501 308 57 43 chr12 23552816 23553539 -97703991 + MurSatRep1 Unknown Unknown 1691 2137 0 8 764 375 270 53 27 chr12 23553479 23553619 -97703911 + MMSAT4 Satellite Satellite 1 180 -232 8 764 242 300 12 0 chr12 23553619 23553699 -97703831 + MurSatRep1 Unknown Unknown 1969 2049 -88 8 764 375 270 53 27 chr12 23553699 23553857 -97703673 + MMSAT4 Satellite Satellite 181 387 -25 8 764 3062 84 0 2 chr12 23553907 23554313 -97703217 + L1_Mus1 LINE L1 6163 6567 0 9 764 388 294 0 0 chr12 23554338 23554464 -97703066 + MMSAT4 Satellite Satellite 43 168 0 9 764 271 316 78 47 chr12 23554464 23554631 -97702899 + MurSatRep1 Unknown Unknown 1835 2136 -1 9 764 291 269 0 0 chr12 23554830 23554908 -97702622 + ORR1C2 LTR MaLR 293 370 -14 9 764 857 129 15 0 chr12 23555205 23555337 -97702193 + B1_Mus1 SINE Alu 2 135 -13 9 764 1530 246 56 123 chr12 23555546 23555975 -97701555 - L1_Mur2 LINE L1 -3753 2127 1774 9 764 1209 48 0 14 chr12 23555975 23556122 -97701408 - B1_Mm SINE Alu -1 146 2 9 764 1530 251 69 70 chr12 23556122 23556918 -97700612 - L1_Mur2 LINE L1 -4107 1773 1002 9 764 294 95 0 0 chr12 23557514 23557556 -97699974 + (TA)n Simple_repeat Simple_repeat 1 42 0 9 764 25 0 0 0 chr12 23557574 23557599 -97699931 + AT_rich Low_complexity Low_complexity 1 25 0 9 764 520 248 80 9 chr12 23557610 23557780 -97699750 - Lx2B LINE L1 -171 6805 6625 9 764 414 204 23 0 chr12 23557825 23557997 -97699533 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 1 764 373 176 39 0 chr12 23557998 23558100 -97699430 + (TA)n Simple_repeat Simple_repeat 2 107 0 1 764 231 88 0 0 chr12 23558106 23558140 -97699390 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 1 764 38 0 0 0 chr12 23558222 23558260 -97699270 + AT_rich Low_complexity Low_complexity 1 38 0 1 764 599 236 52 12 chr12 23558271 23558445 -97699085 - Lx2B LINE L1 -212 6796 6623 1 764 499 157 26 22 chr12 23558518 23558794 -97698736 + (TCTA)n Simple_repeat Simple_repeat 1 276 0 1 764 688 296 48 105 chr12 23558965 23559175 -97698355 + RLTR11A2 LTR ERVK 134 334 -193 1 764 1182 63 0 0 chr12 23559175 23559317 -97698213 + B1_Mm SINE Alu 1 142 -5 1 764 688 296 48 105 chr12 23559317 23559457 -97698073 + RLTR11A2 LTR ERVK 335 464 -63 1 764 346 229 45 19 chr12 23559475 23559631 -97697899 + T-rich Low_complexity Low_complexity 5 164 0 1 764 445 204 23 6 chr12 23559786 23559959 -97697571 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 764 182 174 22 0 chr12 23559978 23560024 -97697506 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 764 432 195 32 7 chr12 23560058 23560213 -97697317 + (CA)n Simple_repeat Simple_repeat 1 159 0 1 764 356 153 41 14 chr12 23560889 23560962 -97696568 + L1MC1 LINE L1 6259 6333 0 1 764 2349 88 41 3 chr12 23560972 23561313 -97696217 + L1_Mus3 LINE L1 6279 6632 -6 1 764 723 278 23 0 chr12 23561321 23561494 -97696036 + B3A SINE B2 1 177 -21 1 764 280 294 100 53 chr12 23561879 23562069 -97695461 + MIRb SINE MIR 4 202 -66 1 764 387 0 0 0 chr12 23562643 23562686 -97694844 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 764 423 0 0 0 chr12 23562686 23562732 -97694798 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 764 238 250 17 0 chr12 23562732 23562792 -97694738 + (CATA)n Simple_repeat Simple_repeat 4 64 0 1 764 214 302 75 37 chr12 23564240 23564374 -97693156 - L2a LINE L2 -191 3235 3097 1 764 317 222 72 24 chr12 23566256 23566339 -97691191 + PB1D10 SINE Alu 17 103 -14 1 764 789 193 7 20 chr12 23566341 23566489 -97691041 + B1_Mur4 SINE Alu 1 146 -4 1 764 905 189 32 42 chr12 23566517 23566733 -97690797 + ID_B1 SINE B4 3 216 -8 1 764 661 292 10 67 chr12 23567640 23567849 -97689681 + B4A SINE B4 24 220 -72 1 764 486 283 44 102 chr12 23567866 23568071 -97689459 + B3A SINE B2 2 194 -1 1 764 860 168 0 0 chr12 23568072 23568209 -97689321 + B1_Mur4 SINE Alu 1 137 -13 1 764 270 279 0 0 chr12 23568295 23568363 -97689167 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 764 2366 81 0 69 chr12 23568363 23568710 -97688820 + ORR1A2 LTR MaLR 1 323 -4 1 764 531 0 0 0 chr12 23568721 23568780 -97688750 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 764 482 303 25 19 chr12 23569491 23569649 -97687881 - RSINE1 SINE B4 -6 159 1 1 764 192 143 0 0 chr12 23569672 23569714 -97687816 + (A)n Simple_repeat Simple_repeat 1 42 0 1 764 306 292 38 15 chr12 23570163 23570295 -97687235 - MER33 DNA MER1_type 0 324 190 1 764 1031 188 27 5 chr12 23570346 23570565 -97686965 - URR1B DNA MER1_type -1 224 1 1 764 210 217 0 0 chr12 23570782 23570851 -97686679 + GA-rich Low_complexity Low_complexity 1 69 0 1 764 2149 198 20 39 chr12 23572111 23572569 -97684961 - RLTR1D LTR ERV1 0 605 157 1 764 9028 274 59 54 chr12 23572645 23576342 -97681188 - RLTR6-int LTR ERV1 0 7778 4064 1 764 225 315 126 37 chr12 23576964 23577099 -97680431 - MLT1J2 LTR MaLR -16 432 286 1 764 489 34 0 0 chr12 23577527 23577586 -97679944 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 764 386 212 10 0 chr12 23578521 23578620 -97678910 + CT-rich Low_complexity Low_complexity 1 100 0 1 764 409 235 0 9 chr12 23579335 23579449 -97678081 - PB1D7 SINE Alu 0 120 9 1 764 635 266 33 28 chr12 23579599 23579781 -97677749 + B3 SINE B2 34 216 0 1 764 899 73 8 0 chr12 23579860 23579983 -97677547 + B1_Mm SINE Alu 24 147 0 1 764 248 277 121 40 chr12 23580028 23580136 -97677394 + B1F SINE Alu 1 119 -30 1 764 2476 114 0 45 chr12 23580136 23580512 -97677018 + RLTR10D LTR ERVK 1 359 0 1 764 248 277 121 40 chr12 23580512 23580527 -97677003 + B1F SINE Alu 120 134 -15 1 764 8338 65 1 24 chr12 23580528 23581592 -97675938 + IAP-d-int LTR ERVK 17 1056 -5486 1 764 12208 63 23 1 chr12 23581591 23583107 -97674423 + IAP-d-int LTR ERVK 4993 6542 0 1 764 2410 86 0 51 chr12 23583107 23583461 -97674069 + RLTR10D LTR ERVK 1 336 -23 1 764 218 175 0 0 chr12 23583687 23583727 -97673803 + CT-rich Low_complexity Low_complexity 1 40 0 1 764 189 121 0 0 chr12 23583727 23583760 -97673770 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 764 542 205 56 32 chr12 23583770 23583896 -97673634 - B1_Mur3 SINE Alu -12 137 9 1 764 718 235 17 28 chr12 23583905 23584071 -97673459 - ID_B1 SINE B4 -44 248 77 1 764 1402 138 9 18 chr12 23585556 23585784 -97671746 + URR1A DNA MER1_type 1 226 0 1 764 741 232 55 30 chr12 23586602 23586802 -97670728 + B4A SINE B4 2 206 -86 1 764 709 240 0 0 chr12 23587030 23587159 -97670371 + RSINE1 SINE B4 3 131 -34 1 764 261 304 12 25 chr12 23587295 23587376 -97670154 - MER2 DNA MER2_type -259 86 7 1 764 222 242 0 46 chr12 23587818 23587883 -97669647 + G-rich Low_complexity Low_complexity 5 66 0 1 764 197 330 71 9 chr12 23587991 23588104 -97669426 + MIRb SINE MIR 23 142 -126 1 764 1845 161 10 10 chr12 23588107 23588421 -97669109 - MTC LTR MaLR 0 421 108 1 764 755 156 49 21 chr12 23588424 23588568 -97668962 + B1_Mur3 SINE Alu 2 149 0 1 764 237 197 0 0 chr12 23588593 23588664 -97668866 + GA-rich Low_complexity Low_complexity 2 72 0 1 764 510 207 71 18 chr12 23588665 23588778 -97668752 - MTC LTR MaLR -302 119 1 1 764 275 104 102 20 chr12 23589852 23589901 -97667629 + MTEa LTR MaLR 1 53 -326 1 764 753 222 99 11 chr12 23589931 23590122 -97667408 - B3 SINE B2 -6 210 3 1 764 944 152 14 0 chr12 23590152 23590297 -97667233 - B1_Mus1 SINE Alu -1 147 1 1 764 1356 167 0 5 chr12 23590328 23590551 -97666979 + URR1B DNA MER1_type 1 222 -3 1 764 786 209 175 104 chr12 23590554 23590863 -97666667 + MTE2a LTR MaLR 35 365 -14 1 764 284 368 39 79 chr12 23590970 23591097 -97666433 + RSINE1 SINE B4 34 155 -10 1 764 216 0 0 0 chr12 23591097 23591121 -97666409 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 764 294 115 0 0 chr12 23591121 23591173 -97666357 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 1 764 483 187 58 102 chr12 23592571 23592708 -97664822 - ETnERV2-int LTR ERVK -3182 132 2 1 95 2636 112 7 12 chr12 23592715 23593121 -97664409 - RLTR9E LTR ERVK -5 404 1 1 765 457 132 0 50 chr12 23593121 23593201 -97664329 - ETnERV2-int LTR ERVK 0 7406 7331 1 765 16380 203 43 29 chr12 23593414 23598827 -97658703 - ETnERV2-int LTR ERVK -980 6426 285 1 765 1246 47 18 6 chr12 23598827 23598997 -97658533 + L1Md_F2 LINE L1 6407 6578 -4 1 765 7892 203 37 22 chr12 23598997 23599275 -97658255 - ETnERV2-int LTR ERVK -3030 284 3 1 765 2617 113 7 25 chr12 23599282 23599549 -97657981 - RLTR9E LTR ERVK -6 403 141 1 765 2624 111 24 157 chr12 23599549 23600140 -97657390 + RLTR1B LTR ERV1 1 512 0 1 765 2617 113 7 25 chr12 23600140 23600280 -97657250 - RLTR9E LTR ERVK -269 140 3 1 765 436 215 20 61 chr12 23600337 23600351 -97657179 - B3A SINE B2 -101 97 89 1 765 495 0 0 0 chr12 23600351 23600406 -97657124 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 765 584 131 0 0 chr12 23600406 23600490 -97657040 - B2_Mm2 SINE B2 -109 86 3 1 765 395 218 0 0 chr12 23600572 23600650 -97656880 + PB1D10 SINE Alu 40 117 0 1 765 463 210 12 0 chr12 23600655 23600736 -97656794 + RSINE1 SINE B4 53 134 -31 1 765 422 258 73 24 chr12 23600734 23600857 -97656673 + B1F1 SINE Alu 21 149 0 1 765 592 252 0 43 chr12 23600891 23601089 -97656441 + B3 SINE B2 18 195 0 1 765 810 217 30 18 chr12 23601653 23601817 -97655713 - B3A SINE B2 -30 168 3 1 765 215 277 105 46 chr12 23601820 23602008 -97655522 + L2b LINE L2 2963 3158 -229 1 765 230 304 10 98 chr12 23602179 23602281 -97655249 + MT2B2 LTR ERVL 149 241 -343 1 765 388 289 29 0 chr12 23602205 23602309 -97655221 + PB1D7 SINE Alu 8 114 -6 1 765 233 319 98 32 chr12 23602323 23602429 -97655101 - MIRc SINE MIR -155 113 2 1 765 214 325 6 63 chr12 23603232 23603406 -97654124 + (CAGGA)n Simple_repeat Simple_repeat 2 165 0 1 765 304 346 118 20 chr12 23603486 23603565 -97653965 + L1MD2 LINE L1 6084 6172 -187 1 765 453 36 0 0 chr12 23603565 23603620 -97653910 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 765 304 346 118 20 chr12 23603620 23603785 -97653745 + L1MD2 LINE L1 6173 6351 -8 1 765 671 302 45 35 chr12 23603798 23604086 -97653444 + B4A SINE B4 2 292 0 1 765 958 112 0 7 chr12 23604368 23604512 -97653018 - URR1B DNA MER1_type 0 225 83 1 765 182 274 12 142 chr12 23605106 23605203 -97652327 + MIRb SINE MIR 80 163 -105 1 765 275 250 0 29 chr12 23605629 23605699 -97651831 - MT2A LTR ERVL -457 76 9 1 765 1271 14 0 0 chr12 23605903 23606049 -97651481 + MT2_Mm LTR ERVL 348 493 0 1 765 794 263 18 30 chr12 23606353 23606643 -97650887 - MTE2a LTR MaLR -5 374 35 1 765 835 176 169 11 chr12 23606644 23606833 -97650697 + URR1A DNA MER1_type 2 220 -6 1 765 320 299 124 0 chr12 23607693 23607830 -97649700 + HAL1-3A_ME LINE L1 2285 2438 -420 1 765 220 111 0 43 chr12 23607832 23607879 -97649651 + G-rich Low_complexity Low_complexity 1 45 0 1 765 743 199 28 0 chr12 23608220 23608361 -97649169 + B1_Mus1 SINE Alu 3 147 -1 1 765 27 49 0 0 chr12 23608361 23608402 -97649128 + AT_rich Low_complexity Low_complexity 1 41 0 1 765 270 317 94 31 chr12 23608462 23608589 -97648941 + MLT1F2 LTR MaLR 142 276 -284 1 765 1102 85 6 6 chr12 23608657 23608835 -97648695 + (GA)n Simple_repeat Simple_repeat 2 179 0 1 765 180 0 0 0 chr12 23608839 23608859 -97648671 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 1 765 236 246 0 0 chr12 23609009 23609070 -97648460 + CT-rich Low_complexity Low_complexity 1 61 0 1 765 3334 53 2 0 chr12 23609084 23609479 -97648051 - MTA_Mm LTR MaLR 0 396 1 1 765 8988 51 3 0 chr12 23609479 23610574 -97646956 - MTA_Mm-int LTR MaLR 0 1098 1 1 765 3433 33 3 0 chr12 23610574 23610966 -97646564 - MTA_Mm LTR MaLR 0 396 4 1 765 498 17 0 0 chr12 23610966 23611025 -97646505 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 765 740 241 26 107 chr12 23613035 23613413 -97644117 - RLTR46 LTR ERVK 0 357 1 1 765 654 307 10 50 chr12 23613621 23613820 -97643710 + ID_B1 SINE B4 23 213 -11 2 765 258 32 0 0 chr12 23613821 23613852 -97643678 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 765 997 109 0 0 chr12 23613875 23614013 -97643517 + B1_Mus1 SINE Alu 1 138 -10 2 765 237 33 0 0 chr12 23614080 23614110 -97643420 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 765 405 0 0 0 chr12 23614110 23614154 -97643376 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 765 542 342 39 3 chr12 23614174 23614419 -97643111 - L1MD LINE L1 -2147 5848 5597 2 765 358 310 177 0 chr12 23614469 23614582 -97642948 - RSINE1 SINE B4 -29 136 4 2 765 805 93 34 0 chr12 23614589 23614707 -97642823 + RMER17D2 LTR ERVK 1 122 -687 2 765 790 117 0 42 chr12 23614710 23614843 -97642687 + RMER17D2 LTR ERVK 673 800 -9 2 765 3629 81 38 6 chr12 23614843 23615145 -97642385 + RLTR1B LTR ERV1 1 303 -209 2 765 327 65 0 0 chr12 23615145 23615191 -97642339 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 2 765 3629 81 38 6 chr12 23615191 23615384 -97642146 + RLTR1B LTR ERV1 304 511 -1 2 765 237 292 27 127 chr12 23615462 23615572 -97641958 - RMER21A LTR ERV1 -273 674 576 2 765 1316 189 180 140 chr12 23615494 23615938 -97641592 - MT2A LTR ERVL -71 462 1 2 765 527 241 28 7 chr12 23615939 23616081 -97641449 - L1MD LINE L1 -676 5566 5422 2 765 681 254 25 66 chr12 23616098 23616275 -97641255 + B3A SINE B2 1 177 -21 2 765 714 86 0 0 chr12 23616275 23616391 -97641139 + (CA)n Simple_repeat Simple_repeat 1 116 0 2 765 681 254 25 66 chr12 23616391 23616411 -97641119 + B3A SINE B2 178 190 -8 2 765 629 247 73 68 chr12 23616462 23616653 -97640877 - B3 SINE B2 -23 193 2 2 765 240 188 37 24 chr12 23616661 23616743 -97640787 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 2 765 850 137 0 67 chr12 23616745 23616894 -97640636 - B1_Mus1 SINE Alu 0 148 10 2 765 1643 220 57 47 chr12 23617279 23617484 -97640046 - MTD LTR MaLR -14 405 192 2 765 742 263 32 37 chr12 23617484 23617701 -97639829 - B3 SINE B2 0 216 1 2 765 1643 220 57 47 chr12 23617701 23617896 -97639634 - MTD LTR MaLR -228 191 1 2 765 5980 72 36 5 chr12 23618015 23618799 -97638731 - RLTR13C2 LTR ERVK 0 808 1 2 765 424 254 138 21 chr12 23619317 23619462 -97638068 + RSINE1 SINE B4 2 163 -2 2 765 804 30 0 0 chr12 23619475 23619574 -97637956 + (GA)n Simple_repeat Simple_repeat 2 100 0 2 765 1069 103 6 6 chr12 23619828 23620004 -97637526 + (GGGAGA)n Simple_repeat Simple_repeat 3 178 0 2 765 329 250 72 79 chr12 23620051 23620190 -97637340 - RMER10A LTR ERVL -240 202 65 2 765 355 285 50 21 chr12 23620662 23620802 -97636728 + MLT1N2 LTR MaLR 414 557 -5 2 765 214 304 54 0 chr12 23621201 23621257 -97636273 - MIRm SINE MIR -121 155 97 2 765 2252 185 78 0 chr12 23621549 23622009 -97635521 + RLTR1 LTR ERV1 129 624 0 2 765 1014 267 18 0 chr12 23622285 23622506 -97635024 - MTEa LTR MaLR -154 225 1 2 765 226 235 78 0 chr12 23622652 23622703 -97634827 + B4A SINE B4 69 123 -169 2 765 239 247 124 142 chr12 23622670 23622719 -97634811 + PB1D10 SINE Alu 6 63 -54 2 765 949 137 0 20 chr12 23622719 23622868 -97634662 - B1_Mus1 SINE Alu -2 146 1 2 765 239 247 124 142 chr12 23622868 23622931 -97634599 + PB1D10 SINE Alu 64 116 -1 2 765 2629 38 184 0 chr12 23622990 23623337 -97634193 + IAPLTR2a LTR ERVK 1 411 0 2 765 1146 139 43 63 chr12 23623337 23623620 -97633910 + IAPEz-int LTR ERVK 9 258 -7323 2 765 234 267 0 0 chr12 23623622 23623667 -97633863 + RLTR27 LTR ERVK 231 275 -34 2 765 3241 68 45 16 chr12 23623667 23624221 -97633309 + IAPEz-int LTR ERVK 168 662 -5819 2 765 2765 67 0 3 chr12 23624221 23624564 -97632966 + IAPEz-int LTR ERVK 1359 1700 -4781 2 765 6492 58 19 12 chr12 23624557 23625380 -97632150 + IAPEz-int LTR ERVK 5651 6479 -2 2 765 2608 38 184 0 chr12 23625382 23625729 -97631801 + IAPLTR2a LTR ERVK 1 411 0 2 765 3804 239 70 58 chr12 23625751 23626895 -97630635 + MTD-int LTR MaLR 100 1257 -1 2 765 1600 206 97 3 chr12 23626904 23627265 -97630265 + MTD LTR MaLR 25 419 0 2 765 884 234 15 15 chr12 23627796 23628000 -97629530 - B3 SINE B2 -11 205 2 2 765 313 316 122 45 chr12 23628203 23628514 -97629016 + L1MEd LINE L1 883 1217 -4902 2 765 242 355 0 0 chr12 23628521 23628614 -97628916 + (TGAA)n Simple_repeat Simple_repeat 4 96 0 2 765 719 218 18 100 chr12 23628671 23628797 -97628733 + URR1B DNA MER1_type 1 111 -114 2 765 8215 24 2 3 chr12 23628797 23629727 -97627803 + RLTR13B3 LTR ERVK 1 929 0 2 765 719 218 18 100 chr12 23629727 23629829 -97627701 + URR1B DNA MER1_type 112 210 -15 2 765 335 312 0 0 chr12 23630181 23630258 -97627272 - ID4_ SINE ID 0 83 7 2 765 375 277 0 50 chr12 23630287 23630386 -97627144 - PB1D10 SINE Alu -11 106 13 2 765 489 288 13 40 chr12 23630584 23630736 -97626794 - B1F SINE Alu 0 149 2 2 765 1287 199 161 6 chr12 23630763 23631086 -97626444 - ORR1D1 LTR MaLR -1 373 1 2 765 282 288 53 26 chr12 23631439 23631553 -97625977 - L2c LINE L2 -53 3334 3218 2 765 229 289 50 50 chr12 23631699 23631779 -97625751 + MamGypLTR1c LTR Gypsy 561 640 -163 2 765 2030 158 58 32 chr12 23632102 23632480 -97625050 - MTC LTR MaLR -33 388 1 2 765 306 123 0 0 chr12 23632539 23632596 -97624934 + (TGG)n Simple_repeat Simple_repeat 2 58 0 2 765 1015 83 0 94 chr12 23633029 23633188 -97624342 - B1_Mus1 SINE Alu 0 148 5 2 765 592 186 204 90 chr12 23634002 23634203 -97623327 + URR1B DNA MER1_type 2 225 0 2 765 1114 201 5 0 chr12 23634241 23634455 -97623075 - B3 SINE B2 0 216 2 2 765 3190 105 26 2 chr12 23636050 23636516 -97621014 - RLTR44C LTR ERVK -25 477 1 2 765 229 278 129 73 chr12 23637726 23637850 -97619680 - MER82 DNA MER2_type -251 402 272 2 765 1370 293 11 32 chr12 23638193 23638226 -97619304 + ORR1D2 LTR MaLR 1 33 -337 2 765 1075 145 91 10 chr12 23638226 23638435 -97619095 - URR1A DNA MER1_type 0 226 1 2 765 1370 293 11 32 chr12 23638435 23638775 -97618755 + ORR1D2 LTR MaLR 34 366 -4 2 765 267 345 35 0 chr12 23638950 23639066 -97618464 - RMER15 LTR ERVL -16 559 440 2 765 1725 239 45 2 chr12 23639066 23639464 -97618066 + MTD LTR MaLR 2 416 -3 2 765 184 323 120 40 chr12 23639991 23640091 -97617439 - L3 LINE CR1 -3343 1146 1039 2 765 570 284 29 29 chr12 23640503 23640677 -97616853 - ID_B1 SINE B4 0 224 51 2 765 367 175 122 37 chr12 23641357 23641464 -97616066 + B3 SINE B2 8 123 -72 2 765 390 42 0 0 chr12 23641501 23641549 -97615981 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 765 564 206 10 10 chr12 23641578 23641681 -97615849 + B1_Mur2 SINE Alu 7 109 -40 2 765 559 256 17 0 chr12 23641888 23642005 -97615525 + RSINE1 SINE B4 3 121 -44 2 765 1310 94 16 0 chr12 23642006 23642198 -97615332 + B2_Mm2 SINE B2 1 195 0 2 765 30 27 0 0 chr12 23642284 23642321 -97615209 + AT_rich Low_complexity Low_complexity 1 37 0 2 765 207 146 0 0 chr12 23642353 23642394 -97615136 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2 765 204 314 122 44 chr12 23642631 23642721 -97614809 - L2b LINE L2 -51 3324 3228 2 765 420 278 175 65 chr12 23642731 23643047 -97614483 - ORR1E LTR MaLR 0 359 1 2 765 1005 163 0 0 chr12 23643282 23643429 -97614101 - B1_Mur1 SINE Alu 0 149 3 2 765 356 268 80 30 chr12 23643516 23643616 -97613914 + RSINE1 SINE B4 50 154 -11 2 765 1381 109 0 5 chr12 23643686 23643880 -97613650 + B2_Mm2 SINE B2 1 193 -2 2 765 188 329 92 49 chr12 23643942 23644105 -97613425 - L2b LINE L2 -459 2960 2791 2 765 1900 145 19 16 chr12 23644509 23644817 -97612713 - MTC LTR MaLR -6 415 107 2 765 1288 27 0 0 chr12 23644844 23644991 -97612539 + B1_Mus2 SINE Alu 1 147 0 2 765 297 75 0 0 chr12 23644991 23645031 -97612499 + (A)n Simple_repeat Simple_repeat 1 40 0 2 765 650 112 122 0 chr12 23645031 23645138 -97612392 - MTC LTR MaLR -301 120 1 2 765 491 311 68 8 chr12 23646149 23646282 -97611248 - RSINE1 SINE B4 -4 161 21 2 765 4487 18 0 0 chr12 23646603 23647096 -97610434 + MT2_Mm LTR ERVL 1 493 0 2 765 47623 21 8 0 chr12 23647096 23652412 -97605118 + MERVL-int LTR ERVL 1 5360 -125 2 765 403 167 46 35 chr12 23652412 23652499 -97605031 + ORR1A3-int LTR MaLR 553 640 -1323 2 765 289 0 0 0 chr12 23652499 23652533 -97604997 + MERVL-int LTR ERVL 5448 5481 -4 2 765 4490 18 0 0 chr12 23652533 23653026 -97604504 + MT2_Mm LTR ERVL 1 493 0 2 765 219 259 74 0 chr12 23653036 23653083 -97604447 + B4A SINE B4 30 80 -212 2 765 415 102 0 0 chr12 23653083 23653142 -97604388 + RMER6D LTR ERVK 1 59 -661 2 765 380 230 12 62 chr12 23653393 23653528 -97604002 + B3 SINE B2 70 193 0 2 765 234 128 26 0 chr12 23653616 23653655 -97603875 + MLT1C LTR MaLR 149 188 -279 2 765 572 265 0 13 chr12 23653894 23654043 -97603487 - B1_Mm SINE Alu 0 147 1 2 765 546 43 0 0 chr12 23654237 23654306 -97603224 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2 765 1333 236 89 99 chr12 23654448 23654751 -97602779 + MTD LTR MaLR 16 352 -67 2 765 1332 0 0 0 chr12 23654751 23654899 -97602631 + (TTCCC)n Simple_repeat Simple_repeat 5 152 0 2 765 1333 236 89 99 chr12 23654899 23654956 -97602574 + MTD LTR MaLR 353 374 -45 2 765 698 190 34 47 chr12 23654956 23655105 -97602425 - B1_Mus1 SINE Alu -1 147 1 2 765 1333 236 89 99 chr12 23655105 23655148 -97602382 + MTD LTR MaLR 375 416 -3 2 765 1098 119 6 0 chr12 23655315 23655474 -97602056 + B2_Mm1a SINE B2 1 160 -33 2 765 396 0 0 0 chr12 23655474 23655518 -97602012 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 765 493 185 37 0 chr12 23655759 23655867 -97601663 - Lx3B LINE L1 0 6973 6862 2 765 429 221 92 35 chr12 23657010 23657151 -97600379 - B1F SINE Alu 0 149 1 2 765 1110 335 66 66 chr12 23657521 23658214 -97599316 - MER63C DNA AcHobo -5 925 233 2 765 791 171 21 7 chr12 23658476 23658617 -97598913 + B1_Mur1 SINE Alu 1 143 -6 2 765 651 246 79 59 chr12 23658757 23658960 -97598570 + B3 SINE B2 10 216 0 2 765 345 252 0 0 chr12 23658970 23659073 -97598457 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 765 544 216 0 30 chr12 23659089 23659189 -97598341 + B3 SINE B2 3 99 -117 2 765 838 116 0 120 chr12 23659189 23659356 -97598174 + B1_Mus1 SINE Alu 2 148 0 2 765 326 244 15 0 chr12 23659380 23659463 -97598067 + B3 SINE B2 73 156 -42 2 765 474 252 18 0 chr12 23660351 23660462 -97597068 - PB1D9 SINE Alu -6 114 2 2 765 1096 89 0 20 chr12 23660512 23660661 -97596869 + B1_Mus2 SINE Alu 2 147 0 2 765 1609 219 80 8 chr12 23661079 23661452 -97596078 - MTD LTR MaLR 0 419 20 2 765 277 269 0 0 chr12 23661541 23661608 -97595922 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 765 2106 125 0 70 chr12 23661608 23661951 -97595579 + ORR1A2 LTR MaLR 1 319 -8 3 765 237 328 123 15 chr12 23663832 23663962 -97593568 - MLT1J1 LTR MaLR -18 426 283 3 765 342 80 0 0 chr12 23664391 23664441 -97593089 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 765 203 360 100 0 chr12 23664954 23665054 -97592476 + MIRb SINE MIR 114 223 -45 3 765 258 188 104 0 chr12 23665328 23665376 -97592154 + MTEb LTR MaLR 1 53 -326 3 765 734 228 105 11 chr12 23665405 23665596 -97591934 - B3 SINE B2 -6 210 2 3 765 766 165 16 0 chr12 23665621 23665748 -97591782 - B1_Mus2 SINE Alu -1 146 18 3 765 2597 143 5 12 chr12 23666063 23666473 -97591057 - RLTR9E LTR ERVK -2 407 1 3 765 461 118 0 26 chr12 23666473 23666551 -97590979 - ETnERV2-int LTR ERVK 0 7406 7331 3 765 8904 60 35 48 chr12 23666748 23667984 -97589546 - ETnERV2-int LTR ERVK -977 6429 5211 3 765 4202 53 5 4 chr12 23667941 23668491 -97589039 + MTA_Mm-int LTR MaLR 577 1154 -638 3 765 3202 35 50 0 chr12 23668491 23668868 -97588662 + MTA_Mm LTR MaLR 1 396 0 3 765 3182 251 70 27 chr12 23668868 23670371 -97587159 - ETnERV2-int LTR ERVK -2852 4554 2215 3 765 801 121 0 0 chr12 23671307 23671431 -97586099 + (TCCC)n Simple_repeat Simple_repeat 4 127 0 3 765 325 242 69 20 chr12 23671573 23671674 -97585856 - PB1D7 SINE Alu -2 118 13 3 765 246 257 26 26 chr12 23671608 23671684 -97585846 - MT2B LTR ERVL -361 240 165 3 765 755 236 39 28 chr12 23671871 23672050 -97585480 + B3 SINE B2 34 214 -2 3 765 778 61 0 0 chr12 23672137 23672235 -97585295 - B1_Mus2 SINE Alu -9 138 41 3 765 294 150 31 77 chr12 23672186 23672251 -97585279 - 4.5SRNA scRNA scRNA -8 86 25 3 765 565 192 69 8 chr12 23672265 23672396 -97585134 + ID_B1 SINE B4 84 222 -2 3 765 282 29 0 0 chr12 23672622 23672657 -97584873 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 765 581 226 39 46 chr12 23672672 23672802 -97584728 - B1_Mur3 SINE Alu -17 132 4 3 765 680 226 15 0 chr12 23672826 23672963 -97584567 - ID_B1 SINE B4 -5 219 81 3 765 1304 161 9 18 chr12 23674440 23674668 -97582862 + URR1A DNA MER1_type 1 226 0 3 765 252 0 0 0 chr12 23675411 23675439 -97582091 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 765 738 246 50 25 chr12 23675492 23675692 -97581838 + B4A SINE B4 2 206 -86 3 765 666 248 0 0 chr12 23675920 23676045 -97581485 + RSINE1 SINE B4 3 127 -38 3 765 226 200 0 52 chr12 23676703 23676761 -97580769 + G-rich Low_complexity Low_complexity 5 59 0 3 765 188 312 80 27 chr12 23676876 23676988 -97580542 + MIRb SINE MIR 23 140 -128 3 765 2387 149 11 92 chr12 23676993 23677310 -97580220 - MTC LTR MaLR 0 421 114 3 765 677 200 56 21 chr12 23677310 23677453 -97580077 + B1_Mur3 SINE Alu 2 149 0 3 765 2387 149 11 92 chr12 23677453 23677477 -97580053 - MTC LTR MaLR -308 113 113 3 765 1265 67 0 11 chr12 23677477 23677659 -97579871 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 765 2387 149 11 92 chr12 23677659 23677774 -97579756 - MTC LTR MaLR -308 113 1 3 765 709 275 37 37 chr12 23678937 23679152 -97578378 - B3 SINE B2 0 216 2 3 765 858 179 14 0 chr12 23679177 23679322 -97578208 - B1_Mus1 SINE Alu -1 147 1 3 765 1331 176 0 5 chr12 23679353 23679576 -97577954 + URR1B DNA MER1_type 1 222 -3 3 765 797 203 140 60 chr12 23679579 23679898 -97577632 + MTE2a LTR MaLR 35 365 -14 3 765 270 327 42 83 chr12 23679993 23680113 -97577417 + RSINE1 SINE B4 32 146 -19 3 765 216 0 0 0 chr12 23680118 23680142 -97577388 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 765 1182 34 0 0 chr12 23680142 23680288 -97577242 + (GA)n Simple_repeat Simple_repeat 1 147 0 3 765 1272 84 0 0 chr12 23681730 23681909 -97575621 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 765 336 231 77 83 chr12 23681915 23681973 -97575557 + RMER17A LTR ERVK 353 474 -277 3 765 608 107 0 0 chr12 23681973 23682057 -97575473 - B2_Mm2 SINE B2 -109 86 3 3 765 336 231 77 83 chr12 23682057 23682071 -97575459 + RMER17A LTR ERVK 475 507 -244 3 765 368 267 0 0 chr12 23682132 23682218 -97575312 + PB1D10 SINE Alu 32 117 0 3 765 464 210 12 0 chr12 23682223 23682304 -97575226 + RSINE1 SINE B4 53 134 -31 3 765 485 276 22 22 chr12 23682288 23682425 -97575105 + B1F1 SINE Alu 13 149 0 3 765 658 213 17 43 chr12 23682458 23682647 -97574883 + B3 SINE B2 17 195 0 3 765 773 236 33 23 chr12 23683165 23683378 -97574152 - B3A SINE B2 0 216 3 3 765 229 319 87 51 chr12 23683381 23683576 -97573954 + L2c LINE L2 2963 3164 -223 3 765 333 294 28 0 chr12 23683762 23683871 -97573659 + PB1D7 SINE Alu 3 114 -6 3 765 364 302 8 41 chr12 23683879 23684000 -97573530 - MIRb SINE MIR -150 118 2 3 766 4660 54 11 3 chr12 23734469 23735103 -97522427 + RLTR13B3 LTR ERVK 291 929 0 3 766 1813 100 59 74 chr12 23735867 23736191 -97521339 - ORR1A2 LTR MaLR -8 319 1 3 766 291 254 0 0 chr12 23736191 23736258 -97521272 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 766 935 146 0 0 chr12 23736338 23736475 -97521055 - B1_Mur4 SINE Alu -13 137 1 3 766 247 309 151 23 chr12 23736496 23736668 -97520862 - B3A SINE B2 -3 195 2 3 766 590 268 14 72 chr12 23736685 23736894 -97520636 - B4A SINE B4 -72 220 24 3 766 797 235 16 21 chr12 23737788 23737979 -97519551 - ID_B1 SINE B4 -8 216 27 3 766 39766 47 12 3 chr12 23737980 23744247 -97513283 - L1Md_T LINE L1 0 6582 304 3 766 932 167 0 0 chr12 23744335 23744485 -97513045 - B1_Mur4 SINE Alu 0 150 1 3 766 289 208 62 49 chr12 23744487 23744568 -97512962 - PB1D10 SINE Alu -14 103 22 3 766 502 176 8 8 chr12 23748023 23748143 -97509387 + (TG)n Simple_repeat Simple_repeat 1 120 0 3 766 203 262 126 39 chr12 23748714 23748841 -97508689 - MIRb SINE MIR -66 202 65 3 766 653 251 31 0 chr12 23749297 23749460 -97508070 - B3A SINE B2 -30 168 1 3 766 2287 94 41 6 chr12 23749467 23749808 -97507722 - L1_Mus3 LINE L1 -6 6632 6280 3 766 1374 87 5 11 chr12 23749819 23750005 -97507525 - B2_Mm1t SINE B2 -7 186 2 3 766 395 208 262 23 chr12 23750016 23750284 -97507246 - L1MC1 LINE L1 0 6333 6002 3 766 577 167 28 17 chr12 23750763 23750940 -97506590 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 766 207 233 29 0 chr12 23750959 23751062 -97506468 + (TG)n Simple_repeat Simple_repeat 2 107 0 3 766 542 177 12 12 chr12 23751080 23751240 -97506290 + (TG)n Simple_repeat Simple_repeat 1 160 0 3 766 198 131 42 78 chr12 23751493 23751659 -97505871 + (TAA)n Simple_repeat Simple_repeat 2 161 0 3 766 579 311 40 100 chr12 23751659 23751777 -97505753 - RLTR11A2 LTR ERVK -85 442 348 3 766 1051 75 0 0 chr12 23751777 23751911 -97505619 - B1_Mm SINE Alu -13 134 1 3 766 579 311 40 100 chr12 23751911 23752121 -97505409 - RLTR11A2 LTR ERVK -180 347 134 3 766 283 167 9 29 chr12 23752293 23752398 -97505132 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 3 766 413 191 17 11 chr12 23752414 23752589 -97504941 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 3 766 564 229 55 7 chr12 23752655 23752800 -97504730 + Lx2B LINE L1 6632 6783 -217 3 766 28 29 0 0 chr12 23752839 23752874 -97504656 + AT_rich Low_complexity Low_complexity 1 35 0 3 766 258 32 0 0 chr12 23752899 23752930 -97504600 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 766 466 173 15 0 chr12 23753017 23753150 -97504380 + (TA)n Simple_repeat Simple_repeat 1 135 0 3 766 542 236 71 10 chr12 23753259 23753430 -97504100 + Lx2B LINE L1 6623 6796 -212 3 766 208 200 49 12 chr12 23753442 23753523 -97504007 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 3 766 189 0 0 0 chr12 23753526 23753547 -97503983 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 3 766 1421 246 86 14 chr12 23753553 23754123 -97503407 + L1_Mur3 LINE L1 1472 2082 -3798 3 766 904 131 14 7 chr12 23754391 23754537 -97502993 - B1_Mus1 SINE Alu 0 148 2 3 766 316 256 0 0 chr12 23754834 23754912 -97502618 - ORR1C2 LTR MaLR -14 370 293 3 766 434 294 82 41 chr12 23755123 23755661 -97501869 - MurSatRep1 Unknown Unknown 0 2137 1747 3 766 420 286 7 7 chr12 23755615 23755838 -97501692 - MMSAT4 Satellite Satellite 0 223 1 3 766 459 275 13 13 chr12 23755900 23756206 -97501324 - MMSAT4 Satellite Satellite -1 306 1 3 766 499 324 34 33 chr12 23756146 23756697 -97500833 - MurSatRep1 Unknown Unknown -88 2049 1747 3 766 8294 188 102 35 chr12 23756738 23757724 -97499806 - MurSatRep1 Unknown Unknown -2 2135 1122 3 766 1285 92 6 0 chr12 23757724 23757897 -97499633 + B2_Mm1a SINE B2 2 175 -18 3 766 8294 188 102 35 chr12 23757897 23758760 -97498770 - MurSatRep1 Unknown Unknown -1016 1121 177 3 766 281 303 81 16 chr12 23758760 23758884 -97498646 + B1_Mur2 SINE Alu 1 132 -17 3 766 8294 188 102 35 chr12 23758884 23759033 -97498497 - MurSatRep1 Unknown Unknown -1961 176 3 3 766 276 332 81 52 chr12 23759125 23759335 -97498195 + B3 SINE B2 1 216 0 3 766 296 241 25 41 chr12 23759451 23759572 -97497958 + Lx4B LINE L1 6936 7054 -4 3 766 1293 334 31 42 chr12 23759674 23760384 -97497146 - ORR1C2-int LTR MaLR -107 1263 562 3 766 2214 230 11 6 chr12 23760399 23760924 -97496606 + Lx4B LINE L1 5641 6168 -890 3 766 3299 225 16 8 chr12 23760928 23761694 -97495836 + Lx4B LINE L1 6283 7054 -4 3 766 358 321 70 20 chr12 23761826 23762026 -97495504 - ORR1C2-int LTR MaLR -1107 263 54 3 766 230 354 68 23 chr12 23762106 23762239 -97495291 - MTD LTR MaLR -16 403 265 3 766 570 52 0 0 chr12 23762295 23762369 -97495161 + RLTR9D LTR ERVK 1 74 -329 3 766 2736 53 11 0 chr12 23762369 23762746 -97494784 - MTA_Mm LTR MaLR 0 396 16 3 766 404 276 51 51 chr12 23763973 23764210 -97493320 + L1_Mur3 LINE L1 870 1106 -6622 3 766 439 270 96 0 chr12 23764507 23764737 -97492793 + L1_Mur3 LINE L1 1314 1565 -4315 3 766 407 250 9 122 chr12 23764750 23764964 -97492566 + L1_Mur3 LINE L1 1647 1836 -4044 3 766 4959 109 74 28 chr12 23765548 23765895 -97491635 + RMER17D LTR ERVK 1 367 -522 3 766 1328 19 6 0 chr12 23765895 23766054 -97491476 + (TCTCC)n Simple_repeat Simple_repeat 1 160 0 3 766 4959 109 74 28 chr12 23766054 23766554 -97490976 + RMER17D LTR ERVK 368 886 -3 3 766 270 306 55 85 chr12 23767138 23767374 -97490156 - MT2A LTR ERVL -231 302 74 3 766 225 159 45 60 chr12 23767413 23767480 -97490050 + (TTAGGG)n Simple_repeat Simple_repeat 5 70 0 3 766 250 262 121 16 chr12 23767548 23767672 -97489858 - Lx8 LINE L1 -2 7471 7335 3 766 296 210 12 0 chr12 23767680 23767761 -97489769 + CT-rich Low_complexity Low_complexity 3 84 0 3 766 286 305 103 13 chr12 23767803 23767959 -97489571 - Lx8 LINE L1 -326 7147 6978 3 766 763 251 27 27 chr12 23768274 23768462 -97489068 + ID_B1 SINE B4 4 191 -33 3 766 895 187 173 0 chr12 23768817 23769042 -97488488 - Lx9 LINE L1 0 7644 7381 3 766 1003 106 0 7 chr12 23769094 23769237 -97488293 + B1_Mm SINE Alu 1 142 -5 4 766 195 80 19 57 chr12 23769248 23769301 -97488229 + A-rich Low_complexity Low_complexity 4 54 0 4 766 464 274 142 6 chr12 23769572 23769741 -97487789 + B3A SINE B2 3 194 -4 4 766 194 229 22 67 chr12 23770161 23770250 -97487280 + MER5B DNA MER1_type 32 116 -62 4 766 237 347 31 0 chr12 23770324 23770422 -97487108 - MER5A1 DNA MER1_type 0 166 66 4 766 230 386 15 30 chr12 23770487 23770618 -97486912 + MER3 DNA MER1_type 3 131 -78 4 766 257 268 0 40 chr12 23771989 23772090 -97485440 + B4A SINE B4 1 97 -195 4 766 447 87 0 0 chr12 23772151 23772220 -97485310 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 766 3023 62 13 0 chr12 23773257 23773642 -97483888 - RLTR10 LTR ERVK 0 390 1 4 766 5558 36 5 2 chr12 23773642 23774285 -97483245 - RLTR10-int LTR ERVK -1 1986 1342 4 766 241 304 56 66 chr12 23774285 23774482 -97483048 - RLTR46 LTR ERVK 0 320 126 4 766 28927 183 15 5 chr12 23774611 23781935 -97475595 - IAPEY3-int LTR ERVK 0 7680 246 4 766 280 188 59 59 chr12 23781920 23781988 -97475542 - IAPLTR3-int LTR ERVK -6375 446 379 4 766 319 283 56 66 chr12 23782261 23782458 -97475072 - RLTR46 LTR ERVK 0 320 126 4 766 2165 43 0 4 chr12 23782584 23782838 -97474692 - RLTR10-int LTR ERVK -637 1350 1098 4 766 198 0 0 0 chr12 23782838 23782860 -97474670 + (T)n Simple_repeat Simple_repeat 1 22 0 4 766 1310 14 0 0 chr12 23782860 23783006 -97474524 - B1_Mm SINE Alu 0 147 2 4 766 937 81 0 0 chr12 23783007 23783130 -97474400 - RLTR10-int LTR ERVK -875 1112 990 4 766 648 309 33 33 chr12 23783212 23783604 -97473926 - MMERVK10C-int LTR ERVK -5987 1594 1240 4 766 4294 48 10 0 chr12 23783658 23784271 -97473259 - RLTR10-int LTR ERVK -995 992 301 4 766 755 60 68 0 chr12 23784272 23784389 -97473141 - RLTR10A LTR ERVK -2 409 285 4 766 198 167 0 0 chr12 23784389 23784425 -97473105 + T-rich Low_complexity Low_complexity 1 36 0 4 766 1713 113 39 4 chr12 23784505 23784763 -97472767 - MMERVK10C-int LTR ERVK -7314 267 1 4 766 2965 77 5 35 chr12 23784763 23785165 -97472365 - RLTR10 LTR ERVK 0 390 1 4 766 21 0 0 0 chr12 23787476 23787497 -97470033 + GC_rich Low_complexity Low_complexity 1 21 0 4 766 22 0 0 0 chr12 23788363 23788385 -97469145 + AT_rich Low_complexity Low_complexity 1 22 0 4 766 668 194 0 4 chr12 23789402 23789643 -97467887 + (CA)n Simple_repeat Simple_repeat 1 239 0 4 766 606 174 0 0 chr12 23789694 23789861 -97467669 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 766 358 215 38 0 chr12 23789918 23789997 -97467533 - ID2 SINE ID 0 83 2 4 766 848 177 0 14 chr12 23790115 23790258 -97467272 + B1_Mur3 SINE Alu 2 142 -7 4 766 510 329 61 4 chr12 23790281 23790510 -97467020 + MER46C DNA MER2_type 96 337 -1 4 766 1399 221 106 8 chr12 23790737 23791115 -97466415 + MTD LTR MaLR 5 419 0 4 766 189 0 0 0 chr12 23791511 23791532 -97465998 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 4 766 1012 76 8 8 chr12 23791532 23791665 -97465865 - B1_Mus2 SINE Alu -13 134 2 4 766 503 216 18 18 chr12 23791715 23791828 -97465702 + PB1D9 SINE Alu 2 114 -6 4 766 426 296 55 21 chr12 23792715 23792781 -97464749 - B3 SINE B2 -64 152 83 4 766 724 81 191 24 chr12 23792781 23792907 -97464623 - B1_Mus1 SINE Alu 0 148 2 4 766 426 296 55 21 chr12 23792907 23792985 -97464545 - B3 SINE B2 -134 82 4 4 766 279 281 0 0 chr12 23793001 23793065 -97464465 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 766 672 229 74 115 chr12 23793074 23793239 -97464291 - B3 SINE B2 -1 215 45 4 766 744 186 21 7 chr12 23793421 23793562 -97463968 - B1_Mur1 SINE Alu -6 143 1 4 766 1001 309 120 14 chr12 23793824 23794241 -97463289 + MER63C DNA AcHobo 233 693 -237 4 766 248 290 52 41 chr12 23794176 23794273 -97463257 - MER63D DNA AcHobo -427 634 537 4 766 542 317 49 0 chr12 23794331 23794536 -97462994 + MER63C DNA AcHobo 711 925 -5 4 766 349 265 92 35 chr12 23794904 23795045 -97462485 + B1F SINE Alu 1 149 0 4 766 1223 84 6 0 chr12 23795680 23795858 -97461672 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 766 1033 90 0 0 chr12 23795858 23795991 -97461539 - B1_Mm SINE Alu -12 135 3 4 766 518 189 32 8 chr12 23796516 23796639 -97460891 + Lx3B LINE L1 6848 6973 0 4 766 360 0 0 0 chr12 23796881 23796921 -97460609 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 4 766 1130 113 6 0 chr12 23796921 23797080 -97460450 - B2_Mm1a SINE B2 -33 160 1 4 766 254 188 159 0 chr12 23797575 23797644 -97459886 + MER5A1 DNA MER1_type 13 92 -74 4 766 524 268 81 0 chr12 23798233 23798356 -97459174 - ETnERV2-int LTR ERVK -204 7202 7070 4 766 668 281 92 42 chr12 23798484 23798722 -97458808 + B4A SINE B4 5 254 -38 4 766 352 55 18 18 chr12 23798751 23798807 -97458723 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 766 188 245 38 0 chr12 23798964 23799017 -97458513 + MIRc SINE MIR 85 139 -129 4 766 1046 95 0 39 chr12 23799710 23799864 -97457666 + B1_Mus1 SINE Alu 1 148 0 4 766 2025 162 59 21 chr12 23800380 23800752 -97456778 + MTC LTR MaLR 3 388 -33 4 766 255 306 53 26 chr12 23801299 23801413 -97456117 + L2c LINE L2 3218 3334 -53 4 766 303 286 73 91 chr12 23801570 23801789 -97455741 - L1MC4 LINE L1 -5284 931 717 4 766 1196 204 170 16 chr12 23801901 23802224 -97455306 + ORR1D1 LTR MaLR 1 373 -1 4 766 468 262 20 46 chr12 23802251 23802403 -97455127 + B1F SINE Alu 2 149 0 4 766 321 282 12 12 chr12 23802616 23802702 -97454828 + PB1D10 SINE Alu 19 104 -13 4 766 707 147 6 173 chr12 23803166 23803291 -97454239 - URR1A DNA MER1_type -15 211 113 4 766 1093 83 14 0 chr12 23803291 23803436 -97454094 - B1_Mm SINE Alu 0 147 1 4 766 707 172 39 132 chr12 23803436 23803514 -97454016 - URR1A DNA MER1_type -114 112 3 4 766 312 262 0 12 chr12 23803558 23803643 -97453887 + (TCCA)n Simple_repeat Simple_repeat 3 86 0 4 766 228 67 0 0 chr12 23803949 23803979 -97453551 + (T)n Simple_repeat Simple_repeat 1 30 0 4 766 817 213 18 0 chr12 23803979 23804143 -97453387 + B3 SINE B2 39 205 -11 4 766 446 157 48 0 chr12 23804674 23804757 -97452773 - MTD LTR MaLR 0 419 333 4 766 1122 109 86 0 chr12 23804766 23804783 -97452747 - B2_Mm1a SINE B2 -3 190 167 4 766 384 40 0 0 chr12 23804783 23804833 -97452697 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 4 766 1122 109 86 0 chr12 23804833 23804990 -97452540 - B2_Mm1a SINE B2 -27 166 2 4 766 1278 214 72 4 chr12 23804998 23805275 -97452255 - MTD LTR MaLR -99 320 25 4 766 4594 216 47 57 chr12 23805288 23806456 -97451074 - MTD-int LTR MaLR -6 1252 96 4 766 994 225 230 17 chr12 23806514 23806858 -97450672 + MTD LTR MaLR 3 419 0 4 766 513 228 45 51 chr12 23806864 23807021 -97450509 + MTD-int LTR MaLR 1 156 -1102 4 766 543 288 45 6 chr12 23807167 23807324 -97450206 + RSINE1 SINE B4 3 165 0 4 766 903 144 7 0 chr12 23807449 23807595 -97449935 - B1_Mus1 SINE Alu -1 147 1 4 766 722 178 0 17 chr12 23807614 23807734 -97449796 + B1_Mur1 SINE Alu 32 149 0 4 766 313 270 40 0 chr12 23807747 23807821 -97449709 + ID4_ SINE ID 1 77 -6 4 766 1217 73 0 11 chr12 23807869 23808048 -97449482 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 4 766 912 104 0 0 chr12 23808050 23808184 -97449346 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 4 766 2016 127 36 3 chr12 23808526 23808827 -97448703 - RLTR10E LTR ERVK 0 311 1 4 766 276 222 0 0 chr12 23808827 23808881 -97448649 + MLT1C LTR MaLR 52 105 -362 4 766 543 259 62 22 chr12 23809026 23809204 -97448326 - B4A SINE B4 -105 187 3 4 766 242 209 91 23 chr12 23809229 23809317 -97448213 + MLT1C LTR MaLR 160 253 -137 4 766 2311 100 9 6 chr12 23809342 23809667 -97447863 - MTB LTR MaLR 0 400 75 4 766 2167 209 127 49 chr12 23809667 23810492 -97447038 + RLTR13D6 LTR ERVK 1 893 0 4 766 403 127 68 40 chr12 23810492 23810566 -97446964 - MTA_Mm LTR MaLR -319 77 2 4 766 267 307 45 0 chr12 23810570 23810658 -97446872 + MLT1C LTR MaLR 333 424 -43 4 766 22 0 0 0 chr12 23810670 23810692 -97446838 + AT_rich Low_complexity Low_complexity 1 22 0 4 766 288 271 35 78 chr12 23810784 23810846 -97446684 - PB1D10 SINE Alu -2 115 52 4 766 1012 122 14 0 chr12 23810846 23810993 -97446537 + B1_Mur4 SINE Alu 1 149 -1 4 766 288 271 35 78 chr12 23810993 23811046 -97446484 - PB1D10 SINE Alu -66 51 5 4 766 268 254 104 0 chr12 23811006 23811073 -97446457 - ID_B1 SINE B4 -99 125 52 4 766 932 291 14 4 chr12 23811209 23811468 -97446062 + MTEa LTR MaLR 1 257 -122 4 766 206 273 55 0 chr12 23811910 23811965 -97445565 + MIRc SINE MIR 94 151 -117 4 766 321 268 75 45 chr12 23812349 23812482 -97445048 - MLT1N2 LTR MaLR -13 549 413 4 766 368 229 146 75 chr12 23813025 23813238 -97444292 + RMER10A LTR ERVL 71 298 -144 4 766 339 263 109 46 chr12 23813256 23813431 -97444099 + RMER10A LTR ERVL 257 442 0 4 766 503 265 146 7 chr12 23813582 23813719 -97443811 - RSINE1 SINE B4 -4 161 6 4 766 182 288 16 48 chr12 23814272 23814334 -97443196 + MIR SINE MIR 92 151 -57 4 766 840 188 44 26 chr12 23814356 23814551 -97442979 + MTD LTR MaLR 1 212 -209 4 766 784 194 18 120 chr12 23814551 23814732 -97442798 + B3 SINE B2 1 174 -42 4 766 324 0 0 0 chr12 23814732 23814768 -97442762 + (CATA)n Simple_repeat Simple_repeat 2 37 0 4 766 714 194 18 120 chr12 23814768 23814803 -97442727 + B2_Mm2 SINE B2 168 195 0 4 766 977 214 44 19 chr12 23814798 23815003 -97442527 + MTD LTR MaLR 196 405 -14 4 766 217 233 0 0 chr12 23815283 23815343 -97442187 + A-rich Low_complexity Low_complexity 1 60 0 4 766 800 182 18 111 chr12 23815379 23815542 -97441988 + B1_Mus1 SINE Alu 1 148 0 4 766 631 231 70 65 chr12 23815640 23815825 -97441705 + B3 SINE B2 8 193 -23 4 766 312 70 0 0 chr12 23815895 23815938 -97441592 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 766 723 183 8 0 chr12 23815973 23816104 -97441426 - B3A SINE B2 -64 134 3 4 766 538 273 14 0 chr12 23816123 23816266 -97441264 + L1MD LINE L1 5422 5566 -676 4 766 1396 168 182 142 chr12 23816267 23816711 -97440819 + MT2A LTR ERVL 1 462 -71 4 766 239 281 34 68 chr12 23816632 23816720 -97440810 + RMER21A LTR ERV1 576 660 -287 4 766 4065 152 56 10 chr12 23816811 23816972 -97440558 - RMER17D2 LTR ERVK 0 809 643 4 766 240 35 0 0 chr12 23816972 23817001 -97440529 + (TGG)n Simple_repeat Simple_repeat 2 30 0 4 766 4065 152 56 10 chr12 23817001 23817283 -97440247 - RMER17D2 LTR ERVK -167 642 347 4 766 820 0 0 20 chr12 23817283 23817385 -97440145 + (GGAGA)n Simple_repeat Simple_repeat 2 101 0 4 766 4065 152 56 10 chr12 23817385 23817714 -97439816 - RMER17D2 LTR ERVK -463 346 2 4 766 395 283 177 0 chr12 23817721 23817834 -97439696 + RSINE1 SINE B4 4 136 -29 5 766 502 356 40 5 chr12 23817884 23818131 -97439399 + L1MD LINE L1 5597 5848 -2147 4 766 804 30 0 0 chr12 23818155 23818254 -97439276 + (GA)n Simple_repeat Simple_repeat 1 99 0 5 766 919 135 0 0 chr12 23818351 23818484 -97439046 - B1_Mus1 SINE Alu -15 133 1 5 766 743 274 13 44 chr12 23818516 23818745 -97438785 - ID_B1 SINE B4 0 224 3 5 766 249 98 0 0 chr12 23821050 23821091 -97436439 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 766 222 37 0 0 chr12 23821103 23821130 -97436400 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 5 766 356 72 43 14 chr12 23821291 23821361 -97436169 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 766 464 197 157 33 chr12 23821366 23821487 -97436043 - B1_Mur2 SINE Alu -13 136 1 5 766 581 268 47 8 chr12 23821542 23821670 -97435860 + ETnERV2-int LTR ERVK 7070 7202 -204 5 766 655 246 96 0 chr12 23822063 23822230 -97435300 - B3 SINE B2 -31 185 3 5 766 280 258 132 94 chr12 23822450 23822652 -97434878 - MLT1F1 LTR MaLR -226 334 129 5 766 386 69 0 17 chr12 23822703 23822762 -97434768 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 5 766 755 186 36 0 chr12 23822764 23822904 -97434626 - B1_Mus1 SINE Alu -1 147 3 5 766 871 134 0 27 chr12 23823250 23823434 -97434096 + C-rich Low_complexity Low_complexity 2 180 0 5 766 875 194 85 0 chr12 23824300 23824501 -97433029 - URR1A DNA MER1_type -6 220 3 5 766 901 269 11 29 chr12 23824501 23824772 -97432758 + MTE2b LTR MaLR 47 367 -12 5 766 281 176 0 19 chr12 23825265 23825317 -97432213 + MT2A LTR ERVL 9 59 -474 5 766 3741 91 4 19 chr12 23826397 23826933 -97430597 - L1Md_F2 LINE L1 0 6582 6055 5 766 3848 53 0 2 chr12 23826934 23827475 -97430055 + L1Md_F2 LINE L1 5516 6055 -527 5 766 969 133 178 16 chr12 23827525 23827716 -97429814 + URR1B DNA MER1_type 4 225 0 5 766 702 299 43 32 chr12 23828008 23828288 -97429242 - B4A SINE B4 -8 284 2 5 766 282 29 0 0 chr12 23828466 23828501 -97429029 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 766 364 302 8 41 chr12 23829489 23829610 -97427920 + MIRb SINE MIR 2 118 -150 5 766 333 294 28 0 chr12 23829618 23829727 -97427803 - PB1D7 SINE Alu -6 114 3 5 766 219 293 93 17 chr12 23829913 23830031 -97427499 - L2c LINE L2 -223 3164 3038 5 766 773 236 33 23 chr12 23830111 23830324 -97427206 + B3A SINE B2 3 216 0 5 766 658 213 17 43 chr12 23830842 23831031 -97426499 - B3 SINE B2 0 195 17 5 766 485 276 22 22 chr12 23831064 23831201 -97426329 - B1F1 SINE Alu 0 149 13 5 766 464 210 12 0 chr12 23831185 23831266 -97426264 - RSINE1 SINE B4 -31 134 53 5 766 368 267 0 0 chr12 23831271 23831357 -97426173 - PB1D10 SINE Alu 0 117 32 5 766 336 231 77 83 chr12 23831418 23831432 -97426098 - RMER17A LTR ERVK -244 507 480 5 766 608 107 0 0 chr12 23831432 23831516 -97426014 + B2_Mm2 SINE B2 3 86 -109 5 766 336 231 77 83 chr12 23831516 23831574 -97425956 - RMER17A LTR ERVK -244 479 353 5 766 1272 84 0 0 chr12 23831580 23831759 -97425771 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 766 1182 34 0 0 chr12 23833201 23833348 -97424182 + (TC)n Simple_repeat Simple_repeat 1 147 0 5 766 216 0 0 0 chr12 23833348 23833371 -97424159 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 766 270 327 42 83 chr12 23833376 23833496 -97424034 - RSINE1 SINE B4 -19 146 32 5 766 797 203 140 60 chr12 23833591 23833910 -97423620 - MTE2a LTR MaLR -14 365 35 5 766 1331 176 0 5 chr12 23833913 23834136 -97423394 - URR1B DNA MER1_type -3 222 1 5 766 858 179 14 0 chr12 23834167 23834312 -97423218 + B1_Mus1 SINE Alu 1 147 -1 5 766 709 275 37 37 chr12 23834337 23834552 -97422978 + B3 SINE B2 2 216 0 5 766 2387 149 11 92 chr12 23835715 23835830 -97421700 + MTC LTR MaLR 1 113 -308 5 766 1265 67 0 11 chr12 23835830 23836012 -97421518 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 766 2387 149 11 92 chr12 23836012 23836036 -97421494 + MTC LTR MaLR 114 114 -307 5 766 677 200 56 21 chr12 23836036 23836179 -97421351 - B1_Mur3 SINE Alu 0 149 2 5 766 2387 149 11 92 chr12 23836179 23836496 -97421034 + MTC LTR MaLR 114 421 0 5 766 188 312 80 27 chr12 23836501 23836613 -97420917 - MIRb SINE MIR -128 140 23 5 766 226 200 0 52 chr12 23836728 23836786 -97420744 + C-rich Low_complexity Low_complexity 5 59 0 5 766 666 248 0 0 chr12 23837444 23837569 -97419961 - RSINE1 SINE B4 -38 127 3 5 766 738 246 50 25 chr12 23837797 23837997 -97419533 - B4A SINE B4 -86 206 2 5 766 252 0 0 0 chr12 23838050 23838078 -97419452 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 766 1304 161 9 18 chr12 23838821 23839049 -97418481 - URR1A DNA MER1_type 0 226 1 5 766 680 226 15 0 chr12 23840526 23840663 -97416867 + ID_B1 SINE B4 81 219 -5 5 766 581 226 39 46 chr12 23840687 23840817 -97416713 + B1_Mur3 SINE Alu 4 132 -17 5 766 282 29 0 0 chr12 23840832 23840867 -97416663 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 766 565 192 69 8 chr12 23841093 23841224 -97416306 - ID_B1 SINE B4 -2 222 84 5 766 294 150 31 77 chr12 23841238 23841303 -97416227 + 4.5SRNA scRNA scRNA 25 86 -8 5 766 778 61 0 0 chr12 23841254 23841352 -97416178 + B1_Mus2 SINE Alu 41 138 -9 5 766 755 236 39 28 chr12 23841439 23841618 -97415912 - B3 SINE B2 -2 214 34 5 766 246 257 26 26 chr12 23841805 23841881 -97415649 + MT2B LTR ERVL 165 240 -361 5 766 325 242 69 20 chr12 23841815 23841916 -97415614 + PB1D7 SINE Alu 13 118 -2 5 766 801 121 0 0 chr12 23842058 23842182 -97415348 + (GGGA)n Simple_repeat Simple_repeat 4 127 0 5 766 3182 251 70 27 chr12 23843118 23844621 -97412909 + ETnERV2-int LTR ERVK 2215 4554 -2852 5 766 3202 35 50 0 chr12 23844621 23844998 -97412532 - MTA_Mm LTR MaLR 0 396 1 5 766 4202 53 5 4 chr12 23844998 23845548 -97411982 - MTA_Mm-int LTR MaLR -638 1154 577 5 766 8554 60 36 50 chr12 23845548 23846741 -97410789 + ETnERV2-int LTR ERVK 5254 6429 -977 5 766 461 118 0 26 chr12 23846938 23847016 -97410514 + ETnERV2-int LTR ERVK 7331 7406 0 5 766 2597 143 5 12 chr12 23847016 23847426 -97410104 + RLTR9E LTR ERVK 1 407 -2 5 766 766 165 16 0 chr12 23847741 23847868 -97409662 + B1_Mus2 SINE Alu 18 146 -1 5 766 734 228 105 11 chr12 23847893 23848084 -97409446 + B3 SINE B2 2 210 -6 5 766 258 188 104 0 chr12 23848113 23848161 -97409369 - MTEb LTR MaLR -326 53 1 5 766 203 360 100 0 chr12 23848435 23848535 -97408995 - MIRb SINE MIR -45 223 114 5 766 342 80 0 0 chr12 23849048 23849098 -97408432 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 766 237 328 123 15 chr12 23849527 23849657 -97407873 + MLT1J1 LTR MaLR 283 426 -18 5 766 2106 125 0 70 chr12 23851538 23851881 -97405649 - ORR1A2 LTR MaLR -8 319 1 5 766 277 269 0 0 chr12 23851881 23851948 -97405582 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 766 1609 219 80 8 chr12 23852037 23852410 -97405120 + MTD LTR MaLR 20 419 0 5 766 1096 89 0 20 chr12 23852828 23852977 -97404553 - B1_Mus2 SINE Alu 0 147 2 5 766 474 252 18 0 chr12 23853027 23853138 -97404392 + PB1D9 SINE Alu 2 114 -6 5 766 326 244 15 0 chr12 23854026 23854109 -97403421 - B3 SINE B2 -42 156 73 5 766 838 116 0 120 chr12 23854133 23854300 -97403230 - B1_Mus1 SINE Alu 0 148 2 5 766 544 216 0 30 chr12 23854300 23854400 -97403130 - B3 SINE B2 -117 99 3 5 766 345 252 0 0 chr12 23854416 23854519 -97403011 + (CA)n Simple_repeat Simple_repeat 2 104 0 5 766 651 246 79 59 chr12 23854529 23854732 -97402798 - B3 SINE B2 0 216 10 5 766 791 171 21 7 chr12 23854872 23855013 -97402517 - B1_Mur1 SINE Alu -6 143 1 5 767 1110 335 66 66 chr12 23855275 23855968 -97401562 + MER63C DNA AcHobo 233 925 -5 5 767 429 221 92 35 chr12 23856338 23856479 -97401051 + B1F SINE Alu 1 149 0 5 767 493 185 37 0 chr12 23857622 23857730 -97399800 + Lx3B LINE L1 6862 6973 0 5 767 396 0 0 0 chr12 23857971 23858015 -97399515 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 5 767 1098 119 6 0 chr12 23858015 23858174 -97399356 - B2_Mm1a SINE B2 -33 160 1 5 767 1333 236 89 99 chr12 23858341 23858384 -97399146 - MTD LTR MaLR -3 416 375 5 767 698 190 34 47 chr12 23858384 23858533 -97398997 + B1_Mus1 SINE Alu 1 147 -1 5 767 1333 236 89 99 chr12 23858533 23858590 -97398940 - MTD LTR MaLR -45 374 353 5 767 1332 0 0 0 chr12 23858590 23858738 -97398792 + (GGGAA)n Simple_repeat Simple_repeat 5 152 0 5 767 1333 236 89 99 chr12 23858738 23859041 -97398489 - MTD LTR MaLR -67 352 16 5 767 546 43 0 0 chr12 23859183 23859252 -97398278 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 5 767 572 265 0 13 chr12 23859446 23859595 -97397935 + B1_Mm SINE Alu 1 147 0 5 767 234 128 26 0 chr12 23859834 23859873 -97397657 - MLT1C LTR MaLR -279 188 149 5 767 380 230 12 62 chr12 23859961 23860096 -97397434 - B3 SINE B2 0 193 70 5 767 415 102 0 0 chr12 23860347 23860406 -97397124 - RMER6D LTR ERVK -661 59 1 5 767 219 259 74 0 chr12 23860406 23860453 -97397077 - B4A SINE B4 -212 80 30 5 767 4490 18 0 0 chr12 23860463 23860956 -97396574 - MT2_Mm LTR ERVL 0 493 1 5 767 289 0 0 0 chr12 23860956 23860990 -97396540 - MERVL-int LTR ERVL -4 5481 5448 5 767 403 167 46 35 chr12 23860990 23861077 -97396453 - ORR1A3-int LTR MaLR -1323 640 553 5 767 47609 21 8 0 chr12 23861077 23866393 -97391137 - MERVL-int LTR ERVL -125 5360 1 5 767 4487 18 0 0 chr12 23866393 23866886 -97390644 - MT2_Mm LTR ERVL 0 493 1 5 767 491 311 68 8 chr12 23867207 23867340 -97390190 + RSINE1 SINE B4 21 161 -4 5 767 650 112 122 0 chr12 23868351 23868458 -97389072 + MTC LTR MaLR 1 120 -301 5 767 297 75 0 0 chr12 23868458 23868498 -97389032 + (T)n Simple_repeat Simple_repeat 1 40 0 5 767 1288 27 0 0 chr12 23868498 23868645 -97388885 - B1_Mus2 SINE Alu 0 147 1 5 767 1900 145 19 16 chr12 23868672 23868980 -97388550 + MTC LTR MaLR 107 415 -6 5 767 188 329 92 49 chr12 23869384 23869547 -97387983 + L2b LINE L2 2791 2960 -459 5 767 1381 109 0 5 chr12 23869609 23869803 -97387727 - B2_Mm2 SINE B2 -2 193 1 5 767 356 268 80 30 chr12 23869873 23869973 -97387557 - RSINE1 SINE B4 -11 154 50 5 767 1005 163 0 0 chr12 23870060 23870207 -97387323 + B1_Mur1 SINE Alu 3 149 0 6 767 420 278 175 65 chr12 23870442 23870758 -97386772 + ORR1E LTR MaLR 1 359 0 6 767 204 314 122 44 chr12 23870768 23870858 -97386672 + L2b LINE L2 3228 3324 -51 5 767 207 146 0 0 chr12 23871095 23871136 -97386394 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 6 767 30 27 0 0 chr12 23871168 23871205 -97386325 + AT_rich Low_complexity Low_complexity 1 37 0 6 767 1294 99 16 0 chr12 23871291 23871483 -97386047 - B2_Mm2 SINE B2 0 195 1 6 767 559 256 17 0 chr12 23871484 23871601 -97385929 - RSINE1 SINE B4 -44 121 3 6 767 564 206 10 10 chr12 23871808 23871911 -97385619 - B1_Mur2 SINE Alu -40 109 7 6 767 390 42 0 0 chr12 23871940 23871988 -97385542 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 767 367 175 122 37 chr12 23872025 23872132 -97385398 - B3 SINE B2 -72 123 8 6 767 570 284 29 29 chr12 23872812 23872986 -97384544 + ID_B1 SINE B4 51 224 0 6 767 184 323 120 40 chr12 23873398 23873498 -97384032 + L3 LINE CR1 1039 1146 -3343 6 767 1725 239 45 2 chr12 23874025 23874423 -97383107 - MTD LTR MaLR -3 416 2 6 767 267 345 35 0 chr12 23874423 23874539 -97382991 + RMER15 LTR ERVL 440 559 -16 6 767 1370 293 11 32 chr12 23874714 23875054 -97382476 - ORR1D2 LTR MaLR -4 366 34 6 767 1075 145 91 10 chr12 23875054 23875263 -97382267 + URR1A DNA MER1_type 1 226 0 6 767 1370 293 11 32 chr12 23875263 23875296 -97382234 - ORR1D2 LTR MaLR -337 33 1 6 767 229 278 129 73 chr12 23875639 23875763 -97381767 + MER82 DNA MER2_type 272 402 -251 6 767 3190 105 26 2 chr12 23876973 23877439 -97380091 + RLTR44C LTR ERVK 1 477 -25 6 767 1114 201 5 0 chr12 23879034 23879248 -97378282 + B3 SINE B2 2 216 0 6 767 592 186 204 90 chr12 23879286 23879487 -97378043 - URR1B DNA MER1_type 0 225 2 6 767 1015 83 0 94 chr12 23880301 23880460 -97377070 + B1_Mus1 SINE Alu 5 148 0 6 767 306 123 0 0 chr12 23880893 23880950 -97376580 + (CCA)n Simple_repeat Simple_repeat 2 58 0 6 767 2030 158 58 32 chr12 23881009 23881387 -97376143 + MTC LTR MaLR 1 388 -33 6 767 229 289 50 50 chr12 23881710 23881790 -97375740 - MamGypLTR1c LTR Gypsy -163 640 561 6 767 282 288 53 26 chr12 23881936 23882050 -97375480 + L2c LINE L2 3218 3334 -53 6 767 1287 199 161 6 chr12 23882403 23882726 -97374804 + ORR1D1 LTR MaLR 1 373 -1 6 767 489 288 13 40 chr12 23882753 23882905 -97374625 + B1F SINE Alu 2 149 0 6 767 375 277 0 50 chr12 23883103 23883202 -97374328 + PB1D10 SINE Alu 13 106 -11 6 767 335 312 0 0 chr12 23883231 23883308 -97374222 + ID4_ SINE ID 7 83 0 6 767 719 218 18 100 chr12 23883660 23883762 -97373768 - URR1B DNA MER1_type -15 210 112 6 767 8215 24 2 3 chr12 23883762 23884692 -97372838 - RLTR13B3 LTR ERVK 0 929 1 6 767 719 218 18 100 chr12 23884692 23884818 -97372712 - URR1B DNA MER1_type -114 111 1 6 767 242 355 0 0 chr12 23884875 23884968 -97372562 + (TTCA)n Simple_repeat Simple_repeat 4 96 0 6 767 313 316 122 45 chr12 23884975 23885286 -97372244 - L1MEd LINE L1 -4902 1217 883 6 767 884 234 15 15 chr12 23885489 23885693 -97371837 + B3 SINE B2 2 205 -11 6 767 1600 206 97 3 chr12 23886224 23886585 -97370945 - MTD LTR MaLR 0 419 25 6 767 3804 239 70 58 chr12 23886594 23887738 -97369792 - MTD-int LTR MaLR -1 1257 100 6 767 2608 38 184 0 chr12 23887760 23888107 -97369423 - IAPLTR2a LTR ERVK 0 411 1 6 767 6492 58 19 12 chr12 23888109 23888932 -97368598 - IAPEz-int LTR ERVK -2 6479 5651 6 767 2765 67 0 3 chr12 23888925 23889268 -97368262 - IAPEz-int LTR ERVK -4781 1700 1359 6 767 3241 68 45 16 chr12 23889268 23889822 -97367708 - IAPEz-int LTR ERVK -5819 662 168 6 767 234 267 0 0 chr12 23889822 23889867 -97367663 - RLTR27 LTR ERVK -34 275 231 6 767 1146 139 43 63 chr12 23889869 23890152 -97367378 - IAPEz-int LTR ERVK -7323 258 9 6 767 2629 38 184 0 chr12 23890152 23890499 -97367031 - IAPLTR2a LTR ERVK 0 411 1 6 767 239 247 124 142 chr12 23890558 23890621 -97366909 - PB1D10 SINE Alu -1 116 64 6 767 949 137 0 20 chr12 23890621 23890770 -97366760 + B1_Mus1 SINE Alu 1 146 -2 6 767 239 247 124 142 chr12 23890770 23890819 -97366711 - PB1D10 SINE Alu -54 63 6 6 767 226 235 78 0 chr12 23890786 23890837 -97366693 - B4A SINE B4 -169 123 69 6 767 1014 267 18 0 chr12 23890983 23891204 -97366326 + MTEa LTR MaLR 1 225 -154 6 767 2252 185 78 0 chr12 23891480 23891940 -97365590 - RLTR1 LTR ERV1 0 624 129 6 767 214 304 54 0 chr12 23892232 23892288 -97365242 + MIRm SINE MIR 97 155 -121 6 767 355 285 50 21 chr12 23892687 23892827 -97364703 - MLT1N2 LTR MaLR -5 557 414 6 767 329 250 72 79 chr12 23893299 23893438 -97364092 + RMER10A LTR ERVL 65 202 -240 6 767 1069 103 6 6 chr12 23893485 23893661 -97363869 + (TCTCCC)n Simple_repeat Simple_repeat 3 178 0 6 767 804 30 0 0 chr12 23893915 23894014 -97363516 + (TC)n Simple_repeat Simple_repeat 2 100 0 6 767 424 254 138 21 chr12 23894027 23894172 -97363358 - RSINE1 SINE B4 -2 163 2 6 767 5980 72 36 5 chr12 23894690 23895474 -97362056 + RLTR13C2 LTR ERVK 1 808 0 6 767 1643 220 57 47 chr12 23895593 23895788 -97361742 + MTD LTR MaLR 1 191 -228 6 767 742 263 32 37 chr12 23895788 23896005 -97361525 + B3 SINE B2 1 216 0 6 767 1643 220 57 47 chr12 23896005 23896210 -97361320 + MTD LTR MaLR 192 405 -14 6 767 850 137 0 67 chr12 23896595 23896744 -97360786 + B1_Mus1 SINE Alu 10 148 0 6 767 240 188 37 24 chr12 23896746 23896828 -97360702 + (CAAA)n Simple_repeat Simple_repeat 1 83 0 6 767 629 247 73 68 chr12 23896836 23897027 -97360503 + B3 SINE B2 2 193 -23 6 767 681 254 25 66 chr12 23897078 23897098 -97360432 - B3A SINE B2 -8 190 178 6 767 714 86 0 0 chr12 23897098 23897214 -97360316 + (TG)n Simple_repeat Simple_repeat 1 116 0 6 767 681 254 25 66 chr12 23897214 23897391 -97360139 - B3A SINE B2 -21 177 1 6 767 527 241 28 7 chr12 23897408 23897550 -97359980 + L1MD LINE L1 5422 5566 -676 6 767 1316 189 180 140 chr12 23897551 23897995 -97359535 + MT2A LTR ERVL 1 462 -71 6 767 237 292 27 127 chr12 23897917 23898027 -97359503 + RMER21A LTR ERV1 576 674 -273 6 767 3629 81 38 6 chr12 23898105 23898298 -97359232 - RLTR1B LTR ERV1 0 512 321 6 767 327 65 0 0 chr12 23898298 23898344 -97359186 + (CTGGGG)n Simple_repeat Simple_repeat 1 46 0 6 767 3629 81 38 6 chr12 23898344 23898646 -97358884 - RLTR1B LTR ERV1 -192 320 3 6 767 790 117 0 42 chr12 23898646 23898779 -97358751 - RMER17D2 LTR ERVK -9 800 673 6 767 805 93 34 0 chr12 23898782 23898900 -97358630 - RMER17D2 LTR ERVK -687 122 1 6 767 358 310 177 0 chr12 23898907 23899020 -97358510 + RSINE1 SINE B4 4 136 -29 6 767 542 342 39 3 chr12 23899070 23899315 -97358215 + L1MD LINE L1 5597 5848 -2147 6 767 405 0 0 0 chr12 23899335 23899380 -97358150 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 767 237 33 0 0 chr12 23899380 23899409 -97358121 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 767 997 109 0 0 chr12 23899476 23899614 -97357916 - B1_Mus1 SINE Alu -10 138 1 6 767 258 32 0 0 chr12 23899637 23899668 -97357862 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 767 654 307 10 50 chr12 23899669 23899868 -97357662 - ID_B1 SINE B4 -11 213 23 6 767 740 241 26 107 chr12 23900076 23900454 -97357076 + RLTR46 LTR ERVK 1 357 0 6 767 498 17 0 0 chr12 23902464 23902523 -97355007 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 767 3433 33 3 0 chr12 23902523 23902915 -97354615 + MTA_Mm LTR MaLR 4 396 0 6 767 8988 51 3 0 chr12 23902915 23904010 -97353520 + MTA_Mm-int LTR MaLR 1 1098 0 6 767 3334 53 2 0 chr12 23904010 23904405 -97353125 + MTA_Mm LTR MaLR 1 396 0 6 767 236 246 0 0 chr12 23904419 23904480 -97353050 + GA-rich Low_complexity Low_complexity 1 61 0 6 767 180 0 0 0 chr12 23904630 23904650 -97352880 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 6 767 1102 85 6 6 chr12 23904654 23904832 -97352698 + (TC)n Simple_repeat Simple_repeat 2 179 0 6 767 270 317 94 31 chr12 23904900 23905027 -97352503 - MLT1F2 LTR MaLR -284 276 142 6 767 27 49 0 0 chr12 23905087 23905128 -97352402 + AT_rich Low_complexity Low_complexity 1 41 0 6 767 743 199 28 0 chr12 23905128 23905269 -97352261 - B1_Mus1 SINE Alu -1 147 3 6 767 220 111 0 43 chr12 23905610 23905657 -97351873 + C-rich Low_complexity Low_complexity 1 45 0 6 767 320 299 124 0 chr12 23905659 23905796 -97351734 - HAL1-3A_ME LINE L1 -420 2438 2285 6 767 835 176 169 11 chr12 23906656 23906845 -97350685 - URR1A DNA MER1_type -6 220 2 6 767 794 263 17 35 chr12 23906846 23907136 -97350394 + MTE2a LTR MaLR 35 374 -5 6 767 1271 14 0 0 chr12 23907440 23907586 -97349944 - MT2_Mm LTR ERVL 0 493 348 6 767 275 250 0 29 chr12 23907790 23907860 -97349670 + MT2A LTR ERVL 9 76 -457 6 767 182 274 12 142 chr12 23908286 23908383 -97349147 - MIRb SINE MIR -105 163 80 6 767 958 112 0 7 chr12 23908977 23909121 -97348409 + URR1B DNA MER1_type 83 225 0 6 767 671 302 45 35 chr12 23909403 23909691 -97347839 - B4A SINE B4 0 292 2 6 767 304 346 118 20 chr12 23909704 23909869 -97347661 - L1MD2 LINE L1 -7 6352 6174 6 767 453 36 0 0 chr12 23909869 23909924 -97347606 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 767 304 346 118 20 chr12 23909924 23910003 -97347527 - L1MD2 LINE L1 -186 6173 6085 6 767 214 325 6 63 chr12 23910083 23910257 -97347273 + (TCCTG)n Simple_repeat Simple_repeat 2 165 0 6 767 233 319 98 32 chr12 23911060 23911166 -97346364 + MIRc SINE MIR 2 113 -155 6 767 388 289 29 0 chr12 23911180 23911284 -97346246 - PB1D7 SINE Alu -6 114 8 6 767 230 304 10 98 chr12 23911208 23911310 -97346220 - MT2B2 LTR ERVL -343 241 149 6 767 215 277 105 46 chr12 23911481 23911669 -97345861 - L2b LINE L2 -229 3158 2963 6 767 810 217 30 18 chr12 23911672 23911836 -97345694 + B3A SINE B2 3 168 -30 6 767 592 252 0 43 chr12 23912400 23912598 -97344932 - B3 SINE B2 0 195 18 6 767 422 258 73 24 chr12 23912632 23912755 -97344775 - B1F1 SINE Alu 0 149 21 6 767 463 210 12 0 chr12 23912753 23912834 -97344696 - RSINE1 SINE B4 -31 134 53 6 767 395 218 0 0 chr12 23912839 23912917 -97344613 - PB1D10 SINE Alu 0 117 40 6 767 584 131 0 0 chr12 23912999 23913083 -97344447 + B2_Mm2 SINE B2 3 86 -109 6 767 495 0 0 0 chr12 23913083 23913138 -97344392 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 767 436 215 20 61 chr12 23913138 23913152 -97344378 + B3A SINE B2 89 97 -101 7 767 2617 113 7 25 chr12 23913209 23913349 -97344181 + RLTR9E LTR ERVK 3 140 -269 7 767 2624 111 24 157 chr12 23913349 23913940 -97343590 - RLTR1B LTR ERV1 0 512 1 7 767 2617 113 7 25 chr12 23913940 23914207 -97343323 + RLTR9E LTR ERVK 141 403 -6 7 767 7892 203 37 22 chr12 23914214 23914492 -97343038 + ETnERV2-int LTR ERVK 2 283 -3031 7 767 1246 47 18 6 chr12 23914492 23914662 -97342868 - L1Md_F2 LINE L1 -4 6578 6407 7 767 16380 201 43 29 chr12 23914662 23920075 -97337455 + ETnERV2-int LTR ERVK 284 6426 -980 7 767 457 132 0 50 chr12 23920288 23920368 -97337162 + ETnERV2-int LTR ERVK 7331 7406 0 7 767 2636 112 7 12 chr12 23920368 23920774 -97336756 + RLTR9E LTR ERVK 1 404 -5 7 767 483 187 58 102 chr12 23920781 23920918 -97336612 + ETnERV2-int LTR ERVK 2 132 -3182 7 767 294 115 0 0 chr12 23922316 23922368 -97335162 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 7 767 216 0 0 0 chr12 23922368 23922392 -97335138 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 767 284 368 39 79 chr12 23922392 23922519 -97335011 - RSINE1 SINE B4 -10 155 34 7 767 786 209 175 104 chr12 23922626 23922935 -97334595 - MTE2a LTR MaLR -14 365 35 7 767 1356 167 0 5 chr12 23922938 23923161 -97334369 - URR1B DNA MER1_type -3 222 1 7 767 944 152 14 0 chr12 23923192 23923337 -97334193 + B1_Mus1 SINE Alu 1 147 -1 7 767 753 222 99 11 chr12 23923367 23923558 -97333972 + B3 SINE B2 3 210 -6 7 767 275 104 102 20 chr12 23923588 23923637 -97333893 - MTEa LTR MaLR -326 53 1 7 767 510 207 71 18 chr12 23924711 23924824 -97332706 + MTC LTR MaLR 1 119 -302 7 767 237 197 0 0 chr12 23924825 23924896 -97332634 + CT-rich Low_complexity Low_complexity 2 72 0 7 767 755 156 49 21 chr12 23924921 23925065 -97332465 - B1_Mur3 SINE Alu 0 149 2 7 767 1845 161 10 10 chr12 23925068 23925382 -97332148 + MTC LTR MaLR 108 421 0 7 767 197 330 71 9 chr12 23925385 23925498 -97332032 - MIRb SINE MIR -126 142 23 7 767 222 242 0 46 chr12 23925606 23925671 -97331859 + C-rich Low_complexity Low_complexity 5 66 0 7 767 261 304 12 25 chr12 23926113 23926194 -97331336 + MER2 DNA MER2_type 7 86 -259 7 767 709 240 0 0 chr12 23926330 23926459 -97331071 - RSINE1 SINE B4 -34 131 3 7 767 741 232 55 30 chr12 23926687 23926887 -97330643 - B4A SINE B4 -86 206 2 7 767 1402 138 9 18 chr12 23927705 23927933 -97329597 - URR1A DNA MER1_type 0 226 1 7 767 718 235 17 28 chr12 23929418 23929584 -97327946 + ID_B1 SINE B4 77 248 -44 7 767 542 205 56 32 chr12 23929593 23929719 -97327811 + B1_Mur3 SINE Alu 9 137 -12 7 767 189 121 0 0 chr12 23929729 23929762 -97327768 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 767 218 175 0 0 chr12 23929762 23929802 -97327728 + GA-rich Low_complexity Low_complexity 1 40 0 7 767 2410 86 0 51 chr12 23930028 23930382 -97327148 - RLTR10D LTR ERVK -23 336 1 7 767 12208 63 23 1 chr12 23930382 23931898 -97325632 - IAP-d-int LTR ERVK 0 6542 4993 7 767 8338 65 1 24 chr12 23931897 23932961 -97324569 - IAP-d-int LTR ERVK -5486 1056 17 7 767 248 277 121 40 chr12 23932962 23932977 -97324553 - B1F SINE Alu -15 134 120 7 767 2476 114 0 45 chr12 23932977 23933353 -97324177 - RLTR10D LTR ERVK 0 359 1 7 767 248 277 121 40 chr12 23933353 23933461 -97324069 - B1F SINE Alu -30 119 1 7 767 899 73 8 0 chr12 23933506 23933629 -97323901 - B1_Mm SINE Alu 0 147 24 7 767 635 266 33 28 chr12 23933708 23933890 -97323640 - B3 SINE B2 0 216 34 7 767 409 235 0 9 chr12 23934040 23934154 -97323376 + PB1D7 SINE Alu 9 120 0 7 767 386 212 10 0 chr12 23934869 23934968 -97322562 + GA-rich Low_complexity Low_complexity 1 100 0 7 767 489 34 0 0 chr12 23935903 23935962 -97321568 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 767 225 315 126 37 chr12 23936390 23936525 -97321005 + MLT1J2 LTR MaLR 286 432 -16 7 767 9028 274 59 54 chr12 23937147 23940844 -97316686 + RLTR6-int LTR ERV1 4064 7778 0 7 767 2149 198 20 39 chr12 23940920 23941378 -97316152 + RLTR1D LTR ERV1 157 605 0 7 767 210 217 0 0 chr12 23942638 23942707 -97314823 + CT-rich Low_complexity Low_complexity 1 69 0 7 767 1031 188 27 5 chr12 23942924 23943143 -97314387 + URR1B DNA MER1_type 1 224 -1 7 767 306 292 38 15 chr12 23943194 23943326 -97314204 + MER33 DNA MER1_type 190 324 0 7 767 192 143 0 0 chr12 23943775 23943817 -97313713 + (T)n Simple_repeat Simple_repeat 1 42 0 7 767 482 303 25 19 chr12 23943840 23943998 -97313532 + RSINE1 SINE B4 1 159 -6 7 767 531 0 0 0 chr12 23944709 23944768 -97312762 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 767 2366 81 0 69 chr12 23944779 23945126 -97312404 - ORR1A2 LTR MaLR -4 323 1 7 767 270 279 0 0 chr12 23945126 23945194 -97312336 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 767 860 168 0 0 chr12 23945280 23945417 -97312113 - B1_Mur4 SINE Alu -13 137 1 7 767 486 283 44 102 chr12 23945418 23945623 -97311907 - B3A SINE B2 -1 194 2 7 767 661 292 10 67 chr12 23945640 23945849 -97311681 - B4A SINE B4 -72 220 24 7 767 905 189 32 42 chr12 23946756 23946972 -97310558 - ID_B1 SINE B4 -8 216 3 7 767 789 193 7 20 chr12 23947000 23947148 -97310382 - B1_Mur4 SINE Alu -4 146 1 7 767 317 222 72 24 chr12 23947150 23947233 -97310297 - PB1D10 SINE Alu -14 103 17 7 767 214 302 75 37 chr12 23949115 23949249 -97308281 + L2a LINE L2 3097 3235 -191 7 767 238 250 17 0 chr12 23950697 23950757 -97306773 + (TATG)n Simple_repeat Simple_repeat 4 64 0 7 767 423 0 0 0 chr12 23950757 23950804 -97306726 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 767 387 0 0 0 chr12 23950804 23950846 -97306684 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 767 280 294 100 53 chr12 23951420 23951610 -97305920 - MIRb SINE MIR -66 202 4 7 767 723 278 23 0 chr12 23951995 23952168 -97305362 - B3A SINE B2 -21 177 1 7 767 2349 88 41 3 chr12 23952176 23952517 -97305013 - L1_Mus3 LINE L1 -6 6632 6279 7 767 356 153 41 14 chr12 23952527 23952600 -97304930 - L1MC1 LINE L1 0 6333 6259 7 767 432 195 32 7 chr12 23953276 23953431 -97304099 + (TG)n Simple_repeat Simple_repeat 1 159 0 7 767 182 174 22 0 chr12 23953465 23953511 -97304019 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 767 445 204 23 6 chr12 23953530 23953703 -97303827 + (TG)n Simple_repeat Simple_repeat 1 176 0 7 767 346 229 45 19 chr12 23953858 23954014 -97303516 + A-rich Low_complexity Low_complexity 5 164 0 7 767 688 296 48 105 chr12 23954032 23954172 -97303358 - RLTR11A2 LTR ERVK -63 464 335 7 767 1182 63 0 0 chr12 23954172 23954314 -97303216 - B1_Mm SINE Alu -5 142 1 7 767 688 296 48 105 chr12 23954314 23954524 -97303006 - RLTR11A2 LTR ERVK -193 334 134 7 767 499 157 26 22 chr12 23954695 23954971 -97302559 + (TAGA)n Simple_repeat Simple_repeat 1 276 0 7 767 599 236 52 12 chr12 23955044 23955218 -97302312 + Lx2B LINE L1 6623 6796 -212 7 767 38 0 0 0 chr12 23955229 23955267 -97302263 + AT_rich Low_complexity Low_complexity 1 38 0 7 767 231 88 0 0 chr12 23955349 23955383 -97302147 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 7 767 373 176 39 0 chr12 23955389 23955491 -97302039 + (TA)n Simple_repeat Simple_repeat 2 107 0 7 767 414 204 23 0 chr12 23955492 23955664 -97301866 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 7 767 520 248 80 9 chr12 23955709 23955879 -97301651 + Lx2B LINE L1 6625 6805 -171 7 767 25 0 0 0 chr12 23955890 23955915 -97301615 + AT_rich Low_complexity Low_complexity 1 25 0 7 767 294 95 0 0 chr12 23955933 23955975 -97301555 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 767 1505 250 64 89 chr12 23956571 23957367 -97300163 + L1_Mur2 LINE L1 1002 1773 -4107 7 767 1217 48 0 14 chr12 23957367 23957514 -97300016 + B1_Mm SINE Alu 2 146 -1 7 767 1505 247 56 123 chr12 23957514 23957943 -97299587 + L1_Mur2 LINE L1 1774 2127 -3753 7 767 866 129 15 0 chr12 23958152 23958284 -97299246 - B1_Mus1 SINE Alu -13 135 2 7 767 330 269 0 0 chr12 23958581 23958659 -97298871 - ORR1C2 LTR MaLR -14 370 293 7 767 261 316 78 47 chr12 23958858 23959025 -97298505 - MurSatRep1 Unknown Unknown -1 2136 1835 7 767 385 294 0 0 chr12 23959025 23959151 -97298379 - MMSAT4 Satellite Satellite 0 168 43 7 767 3073 84 0 2 chr12 23959176 23959582 -97297948 - L1_Mus1 LINE L1 0 6567 6163 7 767 372 255 58 38 chr12 23959632 23959850 -97297680 - MMSAT4 Satellite Satellite 0 222 1 7 767 536 320 58 36 chr12 23959790 23959896 -97297634 - MurSatRep1 Unknown Unknown 0 2137 2100 7 767 314 307 0 0 chr12 23959896 23960010 -97297520 - MMSAT4 Satellite Satellite -25 143 30 7 767 536 320 58 36 chr12 23960010 23961142 -97296388 - MurSatRep1 Unknown Unknown 0 2099 1691 7 767 428 309 0 0 chr12 23961047 23961186 -97296344 - MMSAT4 Satellite Satellite 0 168 30 7 767 7987 197 95 34 chr12 23961383 23962184 -97295346 - MurSatRep1 Unknown Unknown -2 2135 1331 7 767 505 34 0 54 chr12 23962184 23962277 -97295253 + (TTATA)n Simple_repeat Simple_repeat 5 92 0 7 767 7987 197 95 34 chr12 23962277 23962489 -97295041 - MurSatRep1 Unknown Unknown -807 1330 1120 7 767 1453 65 5 0 chr12 23962489 23962673 -97294857 + B2_Mm1a SINE B2 2 186 -7 7 767 7987 197 95 34 chr12 23962673 23963519 -97294011 - MurSatRep1 Unknown Unknown -1018 1119 177 7 767 308 323 65 0 chr12 23963519 23963643 -97293887 + B1_Mur2 SINE Alu 1 132 -17 7 767 7987 197 95 34 chr12 23963643 23963792 -97293738 - MurSatRep1 Unknown Unknown -1961 176 3 7 767 272 279 12 48 chr12 23963887 23963970 -97293560 + B3 SINE B2 4 83 -133 7 767 290 262 9 36 chr12 23964223 23964334 -97293196 + Lx4A LINE L1 6947 7054 -4 7 767 1515 321 43 58 chr12 23964437 23965161 -97292369 - ORR1D-int LTR MaLR -96 1274 562 7 767 6123 229 19 11 chr12 23965171 23966579 -97290951 + Lx4B LINE L1 5637 7054 -4 7 767 921 116 0 39 chr12 23966586 23966739 -97290791 + B1_Mus2 SINE Alu 1 147 0 7 767 419 362 52 52 chr12 23966782 23966862 -97290668 - ORR1D-int LTR MaLR -1219 361 286 7 767 327 25 0 0 chr12 23966862 23966902 -97290628 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 767 419 362 52 52 chr12 23966902 23967051 -97290479 - ORR1D-int LTR MaLR -1295 285 132 7 767 441 264 39 48 chr12 23968183 23968414 -97289116 + L1_Mur3 LINE L1 878 1106 -6622 7 767 443 273 210 42 chr12 23968711 23969159 -97288371 + L1_Mur3 LINE L1 1314 1836 -4044 7 767 5121 122 48 26 chr12 23969720 23970083 -97287447 + RMER17D LTR ERVK 1 376 -513 7 767 762 11 0 0 chr12 23970083 23970170 -97287360 + (TCTCC)n Simple_repeat Simple_repeat 2 88 0 7 767 5121 122 48 26 chr12 23970170 23970674 -97286856 + RMER17D LTR ERVK 377 886 -3 7 767 257 335 49 67 chr12 23971079 23971303 -97286227 - MT2B LTR ERVL 0 601 382 7 767 311 192 14 0 chr12 23971388 23971461 -97286069 + CT-rich Low_complexity Low_complexity 3 76 0 7 767 257 281 202 8 chr12 23971530 23971659 -97285871 - Lx8 LINE L1 -342 7131 6978 7 767 718 255 66 24 chr12 23971971 23972184 -97285346 + ID_B1 SINE B4 1 222 -2 7 767 820 188 174 0 chr12 23972516 23972740 -97284790 - Lx9 LINE L1 0 7644 7382 7 767 969 124 0 0 chr12 23972794 23972931 -97284599 + B1_Mm SINE Alu 1 137 -10 8 767 221 127 0 35 chr12 23972953 23973010 -97284520 + A-rich Low_complexity Low_complexity 1 55 0 8 767 538 273 35 28 chr12 23973275 23973463 -97284067 + B3A SINE B2 3 191 -4 8 767 232 262 11 56 chr12 23973861 23973950 -97283580 + MER5B DNA MER1_type 32 116 -62 8 767 325 325 98 13 chr12 23974024 23974177 -97283353 - MER5A1 DNA MER1_type 0 166 1 8 767 253 394 15 30 chr12 23974187 23974318 -97283212 + MER3 DNA MER1_type 3 131 -78 8 767 269 278 0 40 chr12 23975903 23976004 -97281526 + B4A SINE B4 1 97 -195 8 767 423 68 0 0 chr12 23976065 23976124 -97281406 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 767 193 281 164 11 chr12 23976497 23976584 -97280946 + MIRm SINE MIR 58 161 -115 8 767 1583 52 0 10 chr12 23976678 23976872 -97280658 + B2_Mm1a SINE B2 1 192 -1 8 767 2163 170 117 78 chr12 23979858 23980420 -97277110 - RLTR6_Mm LTR ERV1 -70 584 1 8 95 66652 33 12 5 chr12 23980420 23988143 -97269387 - RLTR6-int LTR ERV1 0 7778 1 8 768 2212 119 240 44 chr12 23988144 23988619 -97268911 - RLTR6_Mm LTR ERV1 -50 604 37 8 768 254 248 200 38 chr12 23988621 23988726 -97268804 - RLTR6_Mm LTR ERV1 -532 122 1 8 768 585 42 0 0 chr12 24039170 24039242 -97218288 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 768 930 79 79 0 chr12 24039314 24039440 -97218090 - B1_Mus1 SINE Alu -12 136 1 2 768 716 282 13 43 chr12 24039472 24039702 -97217828 - ID_B1 SINE B4 0 224 2 3 768 239 292 75 43 chr12 24040577 24040670 -97216860 + RMER21A LTR ERV1 259 354 -593 4 768 366 23 0 0 chr12 24042007 24042050 -97215480 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 768 462 18 0 0 chr12 24042050 24042105 -97215425 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 6 768 666 22 33 0 chr12 24042278 24042370 -97215160 + (TC)n Simple_repeat Simple_repeat 1 95 0 7 768 472 174 174 50 chr12 24042375 24042496 -97215034 - B1_Mur2 SINE Alu -13 136 1 8 768 795 228 83 0 chr12 24042521 24042714 -97214816 - B3 SINE B2 -5 211 3 9 768 304 309 81 101 chr12 24042940 24043149 -97214381 - MLT1F2 LTR MaLR -226 334 130 1 768 753 12 0 0 chr12 24043186 24043272 -97214258 + (TTTA)n Simple_repeat Simple_repeat 2 87 0 1 768 667 194 39 0 chr12 24043272 24043401 -97214129 - B1_Mus1 SINE Alu -12 136 3 1 768 517 122 0 42 chr12 24043739 24043859 -97213671 + C-rich Low_complexity Low_complexity 2 116 0 1 768 4118 60 82 0 chr12 24044092 24044613 -97212917 + LTRIS2 LTR ERV1 1 564 0 1 768 300 262 6 58 chr12 24044872 24044965 -97212565 - PB1D10 SINE Alu -15 134 40 1 768 315 155 183 0 chr12 24045047 24045118 -97212412 + B2_Mm2 SINE B2 3 86 -109 1 768 429 36 0 0 chr12 24045132 24045187 -97212343 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 768 531 0 0 0 chr12 24045187 24045245 -97212285 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 768 2570 118 12 10 chr12 24045322 24045724 -97211806 + RLTR9E LTR ERVK 1 403 -6 1 768 22 35 0 0 chr12 24046421 24046450 -97211080 + AT_rich Low_complexity Low_complexity 1 29 0 2 768 933 34 0 0 chr12 24047091 24047208 -97210322 + (TC)n Simple_repeat Simple_repeat 1 117 0 2 768 343 286 55 0 chr12 24047244 24047335 -97210195 - RSINE1 SINE B4 -28 137 42 2 768 812 252 96 78 chr12 24047445 24047771 -97209759 - MTE2a LTR MaLR -4 375 44 2 768 1307 176 0 5 chr12 24047771 24047994 -97209536 - URR1B DNA MER1_type -3 222 1 2 768 925 159 14 0 chr12 24048025 24048170 -97209360 + B1_Mus1 SINE Alu 1 147 -1 2 768 788 222 99 11 chr12 24048199 24048390 -97209140 + B3 SINE B2 3 210 -6 2 768 189 94 0 0 chr12 24048400 24048432 -97209098 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 2 768 258 188 104 0 chr12 24048435 24048483 -97209047 - MTE2a LTR MaLR -326 53 1 2 768 2046 161 10 161 chr12 24049581 24049693 -97207837 + MTC LTR MaLR 1 114 -307 2 768 556 14 14 14 chr12 24049693 24049767 -97207763 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 768 2046 161 10 161 chr12 24049767 24049832 -97207698 + MTC LTR MaLR 115 115 -306 2 768 634 201 63 21 chr12 24049832 24049974 -97207556 - B1_Mur3 SINE Alu 0 149 2 3 768 2046 161 10 161 chr12 24049974 24050291 -97207239 + MTC LTR MaLR 115 421 0 3 768 252 312 79 18 chr12 24050293 24050407 -97207123 - MIRb SINE MIR -125 143 23 3 768 710 232 0 0 chr12 24051239 24051364 -97206166 - RSINE1 SINE B4 -38 127 3 3 768 670 259 60 30 chr12 24051592 24051791 -97205739 - B4A SINE B4 -86 206 2 3 768 243 277 158 26 chr12 24051794 24051946 -97205584 + MIR SINE MIR 90 261 -1 3 768 1245 153 51 9 chr12 24052602 24052819 -97204711 - URR1A DNA MER1_type 0 226 1 3 768 10558 77 1 1 chr12 24054256 24055643 -97201887 + L1Md_F2 LINE L1 4199 5585 -298 3 768 7983 55 2 5 chr12 24055644 24056636 -97200894 + L1Md_F2 LINE L1 5587 6575 -7 3 768 665 177 8 8 chr12 24056655 24056780 -97200750 + ID_B1 SINE B4 92 216 -8 3 768 585 187 47 31 chr12 24056810 24056937 -97200593 + B1_Mur3 SINE Alu 9 137 -12 3 768 299 161 21 0 chr12 24056945 24057038 -97200492 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 4 768 550 218 60 0 chr12 24057244 24057377 -97200153 - ID_B1 SINE B4 -2 222 82 4 768 215 31 0 30 chr12 24057392 24057425 -97200105 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 768 800 92 0 0 chr12 24057425 24057544 -97199986 - B1_Mm SINE Alu -7 140 22 4 768 624 239 42 30 chr12 24057632 24057800 -97199730 - B3 SINE B2 -13 203 34 4 768 287 258 41 10 chr12 24057997 24058095 -97199435 + PB1D7 SINE Alu 13 113 -7 4 768 270 91 23 0 chr12 24058831 24058875 -97198655 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 4 768 939 121 24 0 chr12 24058875 24059041 -97198489 + (GAAA)n Simple_repeat Simple_repeat 3 172 0 4 768 300 70 0 0 chr12 24060038 24060081 -97197449 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 768 18215 100 29 29 chr12 24061520 24062541 -97194989 + ETnERV3-int LTR ERVK 2982 3975 -1833 4 768 342 0 0 0 chr12 24062541 24062579 -97194951 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 5 768 18215 100 29 29 chr12 24062579 24064351 -97193179 + ETnERV3-int LTR ERVK 3976 5775 -33 4 768 6049 74 23 34 chr12 24064369 24064599 -97192931 + RLTR13B3 LTR ERVK 1 232 -697 4 768 8028 55 1 2 chr12 24064599 24065584 -97191946 + L1Md_F2 LINE L1 5587 6570 -12 5 768 6049 74 23 34 chr12 24065584 24066292 -97191238 + RLTR13B3 LTR ERVK 233 929 0 4 768 1813 100 59 74 chr12 24067056 24067380 -97190150 - ORR1A2 LTR MaLR -8 319 1 5 768 291 254 0 0 chr12 24067380 24067447 -97190083 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 768 935 146 0 0 chr12 24067527 24067664 -97189866 - B1_Mur4 SINE Alu -13 137 1 5 768 247 309 151 23 chr12 24067685 24067857 -97189673 - B3A SINE B2 -3 195 2 5 768 595 263 14 72 chr12 24067874 24068083 -97189447 - B4A SINE B4 -72 220 24 5 768 869 220 23 37 chr12 24068976 24069193 -97188337 - ID_B1 SINE B4 -8 216 3 5 768 932 167 0 0 chr12 24069241 24069391 -97188139 - B1_Mur4 SINE Alu 0 150 1 5 768 289 208 62 49 chr12 24069393 24069474 -97188056 - PB1D10 SINE Alu -14 103 22 5 768 238 224 12 12 chr12 24072928 24073014 -97184516 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 768 203 262 126 39 chr12 24073585 24073712 -97183818 - MIRb SINE MIR -66 202 65 6 768 653 251 31 0 chr12 24074168 24074331 -97183199 - B3A SINE B2 -30 168 1 6 768 2269 97 41 6 chr12 24074338 24074679 -97182851 - L1_Mus3 LINE L1 -6 6632 6280 6 768 1374 87 5 11 chr12 24074690 24074876 -97182654 - B2_Mm1t SINE B2 -7 186 2 6 768 395 208 262 23 chr12 24074887 24075155 -97182375 - L1MC1 LINE L1 0 6333 6002 6 768 577 167 28 17 chr12 24075634 24075811 -97181719 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 768 207 233 29 0 chr12 24075830 24075933 -97181597 + (TG)n Simple_repeat Simple_repeat 2 107 0 6 768 434 192 14 14 chr12 24075952 24076100 -97181430 + (TG)n Simple_repeat Simple_repeat 1 148 0 6 768 241 148 39 66 chr12 24076326 24076507 -97181023 + (TAA)n Simple_repeat Simple_repeat 2 177 0 6 768 584 311 40 98 chr12 24076519 24076636 -97180894 - RLTR11A2 LTR ERVK -85 442 348 6 768 1051 75 0 0 chr12 24076636 24076770 -97180760 - B1_Mm SINE Alu -13 134 1 6 768 584 311 40 98 chr12 24076770 24076980 -97180550 - RLTR11A2 LTR ERVK -180 347 134 6 768 283 167 9 29 chr12 24077152 24077257 -97180273 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 7 768 413 191 17 11 chr12 24077273 24077448 -97180082 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 7 768 559 229 55 7 chr12 24077514 24077659 -97179871 + Lx2B LINE L1 6632 6783 -217 7 768 28 29 0 0 chr12 24077698 24077733 -97179797 + AT_rich Low_complexity Low_complexity 1 35 0 7 768 240 35 0 0 chr12 24077758 24077787 -97179743 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 768 463 163 16 0 chr12 24077874 24077997 -97179533 + (TA)n Simple_repeat Simple_repeat 1 125 0 7 768 222 232 14 14 chr12 24078002 24078072 -97179458 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 7 768 567 229 71 10 chr12 24078114 24078285 -97179245 + Lx2B LINE L1 6623 6796 -212 7 768 208 200 49 12 chr12 24078297 24078378 -97179152 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 7 768 189 0 0 0 chr12 24078381 24078402 -97179128 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 7 768 1421 246 86 14 chr12 24078408 24078978 -97178552 + L1_Mur3 LINE L1 1472 2082 -3798 7 768 904 131 14 7 chr12 24079246 24079392 -97178138 - B1_Mus1 SINE Alu 0 148 2 8 768 316 256 0 0 chr12 24079689 24079767 -97177763 - ORR1C2 LTR MaLR -14 370 293 8 768 452 292 82 41 chr12 24079978 24080516 -97177014 - MurSatRep1 Unknown Unknown 0 2137 1747 8 768 420 286 7 7 chr12 24080470 24080693 -97176837 - MMSAT4 Satellite Satellite 0 223 1 8 768 449 273 14 14 chr12 24080760 24081061 -97176469 - MMSAT4 Satellite Satellite -6 301 1 8 768 521 322 34 33 chr12 24081001 24081552 -97175978 - MurSatRep1 Unknown Unknown -88 2049 1747 8 768 8308 187 102 35 chr12 24081593 24082579 -97174951 - MurSatRep1 Unknown Unknown -2 2135 1122 8 768 1285 92 6 0 chr12 24082579 24082752 -97174778 + B2_Mm1a SINE B2 2 175 -18 8 768 8308 187 102 35 chr12 24082752 24083615 -97173915 - MurSatRep1 Unknown Unknown -1016 1121 177 8 768 281 303 81 16 chr12 24083615 24083739 -97173791 + B1_Mur2 SINE Alu 1 132 -17 8 768 8308 187 102 35 chr12 24083739 24083888 -97173642 - MurSatRep1 Unknown Unknown -1961 176 3 8 768 276 332 81 52 chr12 24083980 24084190 -97173340 + B3 SINE B2 1 216 0 8 768 296 241 25 41 chr12 24084306 24084427 -97173103 + Lx4B LINE L1 6936 7054 -4 9 768 1293 334 31 42 chr12 24084530 24085240 -97172290 - ORR1C2-int LTR MaLR -107 1263 562 8 768 2194 232 11 6 chr12 24085255 24085780 -97171750 + Lx4B LINE L1 5641 6168 -890 9 768 3299 225 16 8 chr12 24085784 24086550 -97170980 + Lx4B LINE L1 6283 7054 -4 9 768 358 321 70 20 chr12 24086675 24086875 -97170655 - ORR1C2-int LTR MaLR -1107 263 54 8 768 230 354 68 23 chr12 24086955 24087088 -97170442 - MTD LTR MaLR -16 403 265 9 768 570 52 0 0 chr12 24087144 24087218 -97170312 + RLTR9D LTR ERVK 1 74 -329 9 768 2736 53 11 0 chr12 24087218 24087595 -97169935 - MTA_Mm LTR MaLR 0 396 16 9 768 404 276 51 51 chr12 24088822 24089059 -97168471 + L1_Mur3 LINE L1 870 1106 -6622 9 768 449 278 83 0 chr12 24089356 24089586 -97167944 + L1_Mur3 LINE L1 1314 1562 -4315 9 768 386 255 9 122 chr12 24089599 24089813 -97167717 + L1_Mur3 LINE L1 1647 1836 -4044 9 768 4949 107 77 30 chr12 24090369 24090716 -97166814 + RMER17D LTR ERVK 1 367 -522 9 768 968 25 0 8 chr12 24090716 24090836 -97166694 + (TCTCC)n Simple_repeat Simple_repeat 2 120 0 9 768 4949 107 77 30 chr12 24090836 24091335 -97166195 + RMER17D LTR ERVK 368 887 -2 9 768 254 310 55 85 chr12 24091921 24092157 -97165373 - MT2A LTR ERVL -231 302 74 9 768 225 159 45 60 chr12 24092196 24092263 -97165267 + (TTAGGG)n Simple_repeat Simple_repeat 5 70 0 9 768 250 262 121 16 chr12 24092331 24092455 -97165075 - Lx8 LINE L1 -2 7471 7335 1 768 296 210 12 0 chr12 24092463 24092544 -97164986 + CT-rich Low_complexity Low_complexity 3 84 0 1 768 286 305 103 13 chr12 24092586 24092742 -97164788 - Lx8 LINE L1 -326 7147 6978 1 768 763 251 27 27 chr12 24093057 24093245 -97164285 + ID_B1 SINE B4 4 191 -33 1 768 895 187 173 0 chr12 24093600 24093825 -97163705 - Lx9 LINE L1 0 7644 7381 1 768 1003 106 0 7 chr12 24093877 24094020 -97163510 + B1_Mm SINE Alu 1 142 -5 1 768 182 75 36 54 chr12 24094029 24094085 -97163445 + A-rich Low_complexity Low_complexity 6 60 0 1 768 451 280 142 6 chr12 24094356 24094525 -97163005 + B3A SINE B2 3 194 -4 1 768 194 229 22 67 chr12 24094945 24095034 -97162496 + MER5B DNA MER1_type 32 116 -62 1 768 237 347 31 0 chr12 24095108 24095206 -97162324 - MER5A1 DNA MER1_type 0 166 66 1 768 230 386 15 30 chr12 24095271 24095402 -97162128 + MER3 DNA MER1_type 3 131 -78 1 768 257 268 0 40 chr12 24096773 24096874 -97160656 + B4A SINE B4 1 97 -195 1 768 537 76 0 0 chr12 24096935 24097014 -97160516 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 768 3011 65 13 0 chr12 24098051 24098436 -97159094 - RLTR10 LTR ERVK 0 390 1 1 768 5544 37 5 2 chr12 24098436 24099079 -97158451 - RLTR10-int LTR ERVK -1 1986 1342 1 768 241 304 56 66 chr12 24099079 24099276 -97158254 - RLTR46 LTR ERVK 0 320 126 1 768 39155 186 17 5 chr12 24099405 24106729 -97150801 - IAPEY3-int LTR ERVK 0 7680 246 1 768 278 188 59 59 chr12 24106714 24106782 -97150748 - IAPLTR3-int LTR ERVK -6375 446 379 1 768 254 283 56 66 chr12 24107055 24107252 -97150278 - RLTR46 LTR ERVK 0 320 126 1 768 2156 43 0 4 chr12 24107378 24107632 -97149898 - RLTR10-int LTR ERVK -637 1350 1098 1 768 207 0 0 0 chr12 24107632 24107655 -97149875 + (T)n Simple_repeat Simple_repeat 1 23 0 1 768 1309 7 0 0 chr12 24107655 24107801 -97149729 - B1_Mm SINE Alu 0 147 2 1 768 932 81 0 0 chr12 24107802 24107925 -97149605 - RLTR10-int LTR ERVK -875 1112 990 1 768 628 300 35 32 chr12 24108007 24108399 -97149131 - MMERVK10C-int LTR ERVK -5987 1594 1309 1 768 4292 48 10 0 chr12 24108455 24109068 -97148462 - RLTR10-int LTR ERVK -995 992 301 1 768 700 60 68 0 chr12 24109069 24109186 -97148344 - RLTR10A LTR ERVK -2 409 285 1 768 198 167 0 0 chr12 24109186 24109222 -97148308 + T-rich Low_complexity Low_complexity 1 36 0 1 768 1706 113 39 4 chr12 24109302 24109560 -97147970 - MMERVK10C-int LTR ERVK -7314 267 1 1 768 2964 75 5 35 chr12 24109560 24109962 -97147568 - RLTR10 LTR ERVK 0 390 1 1 768 21 0 0 0 chr12 24112273 24112294 -97145236 + GC_rich Low_complexity Low_complexity 1 21 0 1 768 22 0 0 0 chr12 24113160 24113182 -97144348 + AT_rich Low_complexity Low_complexity 1 22 0 1 768 668 194 0 4 chr12 24114199 24114440 -97143090 + (CA)n Simple_repeat Simple_repeat 1 239 0 1 768 606 174 0 0 chr12 24114491 24114658 -97142872 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 768 358 215 38 0 chr12 24114715 24114794 -97142736 - ID2 SINE ID 0 83 2 1 768 848 177 0 14 chr12 24114912 24115055 -97142475 + B1_Mur3 SINE Alu 2 142 -7 1 768 510 329 61 4 chr12 24115078 24115307 -97142223 + MER46C DNA MER2_type 96 337 -1 1 768 1395 219 106 8 chr12 24115534 24115912 -97141618 + MTD LTR MaLR 5 419 0 1 768 189 0 0 0 chr12 24116308 24116329 -97141201 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1 768 1012 76 8 8 chr12 24116329 24116462 -97141068 - B1_Mus2 SINE Alu -13 134 2 1 768 503 216 18 18 chr12 24116512 24116625 -97140905 + PB1D9 SINE Alu 2 114 -6 1 769 437 301 48 14 chr12 24117512 24117578 -97139952 - B3 SINE B2 -64 152 83 1 769 724 81 191 24 chr12 24117578 24117704 -97139826 - B1_Mus1 SINE Alu 0 148 2 1 769 437 301 48 14 chr12 24117704 24117782 -97139748 - B3 SINE B2 -134 82 4 1 769 279 281 0 0 chr12 24117798 24117862 -97139668 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 769 679 229 194 0 chr12 24117871 24118046 -97139484 - B3 SINE B2 -1 215 7 1 769 744 186 21 7 chr12 24118218 24118359 -97139171 - B1_Mur1 SINE Alu -6 143 1 1 769 1022 307 120 14 chr12 24118621 24119038 -97138492 + MER63C DNA AcHobo 233 693 -237 1 769 248 290 52 41 chr12 24118973 24119070 -97138460 - MER63D DNA AcHobo -427 634 537 1 769 561 316 44 0 chr12 24119128 24119334 -97138196 + MER63C DNA AcHobo 711 925 -5 1 769 349 265 92 35 chr12 24119702 24119843 -97137687 + B1F SINE Alu 1 149 0 1 769 1298 73 6 0 chr12 24120482 24120661 -97136869 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 769 1103 97 0 0 chr12 24120664 24120809 -97136721 - B1_Mm SINE Alu 0 147 3 1 769 518 189 32 8 chr12 24121334 24121457 -97136073 + Lx3B LINE L1 6848 6973 0 1 769 432 0 0 0 chr12 24121699 24121747 -97135783 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1 769 1130 113 6 0 chr12 24121747 24121906 -97135624 - B2_Mm1a SINE B2 -33 160 1 1 769 254 188 159 0 chr12 24122401 24122470 -97135060 + MER5A1 DNA MER1_type 13 92 -74 1 769 524 268 81 0 chr12 24123060 24123183 -97134347 - ETnERV2-int LTR ERVK -204 7202 7070 1 769 668 281 92 42 chr12 24123311 24123549 -97133981 + B4A SINE B4 5 254 -38 1 769 298 61 20 20 chr12 24123578 24123628 -97133902 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 769 188 245 38 0 chr12 24123785 24123838 -97133692 + MIRc SINE MIR 85 139 -129 1 769 1046 95 0 39 chr12 24124531 24124685 -97132845 + B1_Mus1 SINE Alu 1 148 0 1 769 2036 159 59 21 chr12 24125199 24125571 -97131959 + MTC LTR MaLR 3 388 -33 1 769 242 315 53 26 chr12 24126118 24126232 -97131298 + L2c LINE L2 3218 3334 -53 1 769 1222 201 170 16 chr12 24126585 24126908 -97130622 + ORR1D1 LTR MaLR 1 373 -1 1 769 468 262 20 46 chr12 24126935 24127087 -97130443 + B1F SINE Alu 2 149 0 1 769 180 0 0 0 chr12 24127087 24127107 -97130423 + (A)n Simple_repeat Simple_repeat 1 20 0 1 769 321 282 12 12 chr12 24127311 24127397 -97130133 + PB1D10 SINE Alu 19 104 -13 1 769 712 147 6 169 chr12 24127861 24127985 -97129545 - URR1A DNA MER1_type -15 211 113 1 769 1093 83 14 0 chr12 24127985 24128130 -97129400 - B1_Mm SINE Alu 0 147 1 1 769 712 174 39 127 chr12 24128130 24128208 -97129322 - URR1A DNA MER1_type -114 112 4 1 769 312 262 0 12 chr12 24128252 24128337 -97129193 + (TCCA)n Simple_repeat Simple_repeat 3 86 0 1 769 210 71 0 0 chr12 24128643 24128671 -97128859 + (T)n Simple_repeat Simple_repeat 1 28 0 1 769 817 213 18 0 chr12 24128671 24128835 -97128695 + B3 SINE B2 39 205 -11 1 769 446 157 48 0 chr12 24129366 24129449 -97128081 - MTD LTR MaLR 0 419 333 1 769 1122 109 86 0 chr12 24129458 24129475 -97128055 - B2_Mm1a SINE B2 -3 190 167 1 769 348 43 0 0 chr12 24129475 24129521 -97128009 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1 769 1122 109 86 0 chr12 24129521 24129678 -97127852 - B2_Mm1a SINE B2 -27 166 2 1 769 1278 214 72 4 chr12 24129686 24129963 -97127567 - MTD LTR MaLR -99 320 25 1 769 4606 217 46 57 chr12 24129976 24131145 -97126385 - MTD-int LTR MaLR -6 1252 96 1 769 993 235 220 12 chr12 24131203 24131548 -97125982 + MTD LTR MaLR 3 419 0 1 769 499 228 45 51 chr12 24131554 24131711 -97125819 + MTD-int LTR MaLR 1 156 -1102 1 769 543 288 45 6 chr12 24131857 24132014 -97125516 + RSINE1 SINE B4 3 165 0 1 769 903 144 7 0 chr12 24132139 24132285 -97125245 - B1_Mus1 SINE Alu -1 147 1 1 769 722 178 0 17 chr12 24132304 24132424 -97125106 + B1_Mur1 SINE Alu 32 149 0 1 769 313 270 40 0 chr12 24132437 24132511 -97125019 + ID4_ SINE ID 1 77 -6 1 769 1184 79 0 11 chr12 24132559 24132738 -97124792 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 1 769 968 86 7 0 chr12 24132741 24132881 -97124649 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 1 769 2016 127 36 3 chr12 24133218 24133519 -97124011 - RLTR10E LTR ERVK 0 311 1 1 769 276 222 0 0 chr12 24133519 24133573 -97123957 + MLT1C LTR MaLR 52 105 -362 1 769 543 259 62 22 chr12 24133718 24133896 -97123634 - B4A SINE B4 -105 187 3 1 769 242 209 91 23 chr12 24133921 24134009 -97123521 + MLT1C LTR MaLR 160 253 -137 1 769 2311 100 9 6 chr12 24134034 24134359 -97123171 - MTB LTR MaLR 0 400 75 1 769 2167 209 127 49 chr12 24134359 24135184 -97122346 + RLTR13D6 LTR ERVK 1 893 0 1 769 403 127 68 40 chr12 24135184 24135258 -97122272 - MTA_Mm LTR MaLR -319 77 2 1 769 267 307 45 0 chr12 24135262 24135350 -97122180 + MLT1C LTR MaLR 333 424 -43 1 769 22 0 0 0 chr12 24135362 24135384 -97122146 + AT_rich Low_complexity Low_complexity 1 22 0 1 769 278 280 35 78 chr12 24135476 24135538 -97121992 - PB1D10 SINE Alu -2 115 52 1 769 1012 122 14 0 chr12 24135538 24135685 -97121845 + B1_Mur4 SINE Alu 1 149 -1 1 769 278 280 35 78 chr12 24135685 24135738 -97121792 - PB1D10 SINE Alu -66 51 5 1 769 263 238 111 0 chr12 24135702 24135765 -97121765 - ID_B1 SINE B4 -103 121 52 1 769 932 291 14 4 chr12 24135901 24136160 -97121370 + MTEa LTR MaLR 1 257 -122 1 769 206 273 55 0 chr12 24136602 24136657 -97120873 + MIRc SINE MIR 94 151 -117 1 769 329 267 70 56 chr12 24137031 24137174 -97120356 - MLT1N2 LTR MaLR -5 557 413 1 769 432 245 102 172 chr12 24137717 24138117 -97119413 + RMER10A LTR ERVL 71 442 0 1 769 503 265 146 7 chr12 24138268 24138405 -97119125 - RSINE1 SINE B4 -4 161 6 1 769 182 288 16 48 chr12 24138958 24139020 -97118510 + MIR SINE MIR 92 151 -57 1 769 856 182 44 26 chr12 24139042 24139237 -97118293 + MTD LTR MaLR 1 212 -209 1 769 784 194 18 120 chr12 24139237 24139418 -97118112 + B3 SINE B2 1 174 -42 1 769 504 0 0 0 chr12 24139418 24139474 -97118056 + (CATA)n Simple_repeat Simple_repeat 2 57 0 1 769 714 194 18 120 chr12 24139474 24139509 -97118021 + B2_Mm2 SINE B2 168 195 0 1 769 977 214 44 19 chr12 24139504 24139709 -97117821 + MTD LTR MaLR 196 405 -14 1 769 217 233 0 0 chr12 24139989 24140049 -97117481 + A-rich Low_complexity Low_complexity 1 60 0 1 769 800 182 18 111 chr12 24140085 24140248 -97117282 + B1_Mus1 SINE Alu 1 148 0 1 769 631 231 70 65 chr12 24140346 24140531 -97116999 + B3 SINE B2 8 193 -23 1 769 366 61 0 0 chr12 24140601 24140650 -97116880 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 769 723 183 8 0 chr12 24140685 24140816 -97116714 - B3A SINE B2 -64 134 3 1 769 517 248 28 14 chr12 24140835 24140978 -97116552 + L1MD LINE L1 5422 5566 -676 1 769 1396 168 182 142 chr12 24140979 24141423 -97116107 + MT2A LTR ERVL 1 462 -71 1 769 239 281 34 68 chr12 24141344 24141432 -97116098 + RMER21A LTR ERV1 576 660 -287 2 769 4065 152 56 10 chr12 24141523 24141684 -97115846 - RMER17D2 LTR ERVK 0 809 643 2 769 240 35 0 0 chr12 24141684 24141713 -97115817 + (TGG)n Simple_repeat Simple_repeat 2 30 0 2 769 4065 152 56 10 chr12 24141713 24141995 -97115535 - RMER17D2 LTR ERVK -167 642 347 2 769 640 0 0 24 chr12 24141995 24142077 -97115453 + (GGAGA)n Simple_repeat Simple_repeat 2 81 0 2 769 4065 152 56 10 chr12 24142077 24142406 -97115124 - RMER17D2 LTR ERVK -463 346 2 2 769 395 283 177 0 chr12 24142413 24142526 -97115004 + RSINE1 SINE B4 4 136 -29 2 769 484 360 40 5 chr12 24142576 24142823 -97114707 + L1MD LINE L1 5597 5848 -2147 1 769 570 15 0 0 chr12 24142847 24142914 -97114616 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 769 888 150 0 0 chr12 24143011 24143144 -97114386 - B1_Mus1 SINE Alu -15 133 1 2 769 743 274 13 44 chr12 24143176 24143405 -97114125 - ID_B1 SINE B4 0 224 3 2 769 252 0 0 0 chr12 24145361 24145389 -97112141 + (T)n Simple_repeat Simple_repeat 1 28 0 2 769 38646 29 1 0 chr12 24145401 24151852 -97105678 - L1Md_T LINE L1 0 6585 35 2 769 267 93 0 0 chr12 24152206 24152249 -97105281 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 769 222 37 0 0 chr12 24152261 24152288 -97105242 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 769 266 85 50 17 chr12 24152449 24152509 -97105021 + CT-rich Low_complexity Low_complexity 1 62 0 2 769 464 197 157 33 chr12 24152514 24152635 -97104895 - B1_Mur2 SINE Alu -13 136 1 2 769 581 268 47 8 chr12 24152690 24152818 -97104712 + ETnERV2-int LTR ERVK 7070 7202 -204 2 769 655 246 96 0 chr12 24153211 24153378 -97104152 - B3 SINE B2 -31 185 3 2 769 276 248 77 53 chr12 24153669 24153800 -97103730 - MLT1F2 LTR MaLR -292 277 129 2 769 422 65 0 16 chr12 24153851 24153914 -97103616 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 2 769 755 186 36 0 chr12 24153916 24154056 -97103474 - B1_Mus1 SINE Alu -1 147 3 2 769 871 134 0 27 chr12 24154402 24154586 -97102944 + C-rich Low_complexity Low_complexity 2 180 0 2 769 875 194 85 0 chr12 24155452 24155653 -97101877 - URR1A DNA MER1_type -6 220 3 2 769 901 268 11 29 chr12 24155653 24155924 -97101606 + MTE2b LTR MaLR 47 367 -12 2 769 281 176 0 19 chr12 24156417 24156469 -97101061 + MT2A LTR ERVL 9 59 -474 2 769 3793 89 2 20 chr12 24157549 24158087 -97099443 - L1Md_F2 LINE L1 0 6582 6055 2 769 3848 53 0 2 chr12 24158088 24158629 -97098901 + L1Md_F2 LINE L1 5516 6055 -527 2 769 969 133 178 16 chr12 24158679 24158870 -97098660 + URR1B DNA MER1_type 4 225 0 2 769 702 299 43 32 chr12 24159162 24159442 -97098088 - B4A SINE B4 -8 284 2 2 769 318 26 0 0 chr12 24159620 24159659 -97097871 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 769 364 302 8 41 chr12 24160647 24160768 -97096762 + MIRb SINE MIR 2 118 -150 2 769 333 294 28 0 chr12 24160776 24160885 -97096645 - PB1D7 SINE Alu -6 114 3 2 769 238 314 87 51 chr12 24161071 24161266 -97096264 - L2c LINE L2 -223 3164 2963 2 769 773 236 33 23 chr12 24161269 24161481 -97096049 + B3A SINE B2 3 215 -1 2 769 658 213 17 43 chr12 24162000 24162189 -97095341 - B3 SINE B2 0 195 17 2 769 485 276 22 22 chr12 24162222 24162359 -97095171 - B1F1 SINE Alu 0 149 13 2 769 464 210 12 0 chr12 24162343 24162424 -97095106 - RSINE1 SINE B4 -31 134 53 2 769 355 279 0 0 chr12 24162429 24162515 -97095015 - PB1D10 SINE Alu 0 117 32 2 769 630 95 0 0 chr12 24162590 24162674 -97094856 + B2_Mm2 SINE B2 3 86 -109 2 769 1380 72 0 0 chr12 24162674 24162959 -97094571 + (GA)n Simple_repeat Simple_repeat 1 285 0 2 769 876 44 0 0 chr12 24164402 24164515 -97093015 + (TC)n Simple_repeat Simple_repeat 1 113 0 2 769 270 327 42 83 chr12 24164529 24164649 -97092881 - RSINE1 SINE B4 -19 146 32 2 769 797 203 140 60 chr12 24164744 24165063 -97092467 - MTE2a LTR MaLR -14 365 35 2 769 1347 171 0 5 chr12 24165066 24165289 -97092241 - URR1B DNA MER1_type -3 222 1 2 769 858 179 14 0 chr12 24165320 24165465 -97092065 + B1_Mus1 SINE Alu 1 147 -1 2 769 715 266 36 55 chr12 24165490 24165709 -97091821 + B3 SINE B2 2 216 0 2 769 240 146 24 0 chr12 24165719 24165760 -97091770 - MTE2a LTR MaLR -327 52 11 2 769 2362 152 11 92 chr12 24166871 24166986 -97090544 + MTC LTR MaLR 1 113 -308 2 769 966 95 0 0 chr12 24166986 24167134 -97090396 + (TC)n Simple_repeat Simple_repeat 1 148 0 2 769 2362 152 11 92 chr12 24167134 24167158 -97090372 + MTC LTR MaLR 114 114 -307 2 769 677 200 56 21 chr12 24167158 24167301 -97090229 - B1_Mur3 SINE Alu 0 149 2 2 769 2362 152 11 92 chr12 24167301 24167618 -97089912 + MTC LTR MaLR 114 421 0 2 769 188 312 80 27 chr12 24167623 24167735 -97089795 - MIRb SINE MIR -128 140 23 2 769 226 200 0 52 chr12 24167850 24167908 -97089622 + C-rich Low_complexity Low_complexity 5 59 0 2 769 666 248 0 0 chr12 24168565 24168690 -97088840 - RSINE1 SINE B4 -38 127 3 2 769 738 246 50 25 chr12 24168918 24169118 -97088412 - B4A SINE B4 -86 206 2 2 769 252 0 0 0 chr12 24169171 24169199 -97088331 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 769 1323 156 9 18 chr12 24169942 24170170 -97087360 - URR1A DNA MER1_type 0 226 1 2 769 684 208 15 0 chr12 24171654 24171784 -97085746 + ID_B1 SINE B4 88 219 -5 2 769 581 226 39 46 chr12 24171808 24171938 -97085592 + B1_Mur3 SINE Alu 4 132 -17 2 769 282 29 0 0 chr12 24171953 24171988 -97085542 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 769 565 192 69 8 chr12 24172214 24172345 -97085185 - ID_B1 SINE B4 -2 222 84 2 769 301 133 31 77 chr12 24172359 24172424 -97085106 + 4.5SRNA scRNA scRNA 25 86 -8 2 769 782 61 0 0 chr12 24172375 24172473 -97085057 + B1_Mus2 SINE Alu 41 138 -9 2 769 755 236 39 28 chr12 24172561 24172740 -97084790 - B3 SINE B2 -2 214 34 2 769 246 257 26 26 chr12 24172927 24173003 -97084527 + MT2B LTR ERVL 165 240 -361 2 769 325 242 69 20 chr12 24172937 24173038 -97084492 + PB1D7 SINE Alu 13 118 -2 2 769 801 121 0 0 chr12 24173180 24173304 -97084226 + (GGGA)n Simple_repeat Simple_repeat 4 127 0 2 769 3157 252 71 27 chr12 24174237 24175740 -97081790 + ETnERV2-int LTR ERVK 2215 4554 -2852 2 769 3202 35 50 0 chr12 24175740 24176117 -97081413 - MTA_Mm LTR MaLR 0 396 1 2 769 4187 55 5 4 chr12 24176117 24176667 -97080863 - MTA_Mm-int LTR MaLR -638 1154 577 2 769 8531 59 37 50 chr12 24176667 24177859 -97079671 + ETnERV2-int LTR ERVK 5254 6429 -977 2 769 436 132 0 26 chr12 24178056 24178134 -97079396 + ETnERV2-int LTR ERVK 7331 7406 0 2 769 2576 146 5 12 chr12 24178134 24178544 -97078986 + RLTR9E LTR ERVK 1 407 -2 2 769 766 165 16 0 chr12 24178859 24178986 -97078544 + B1_Mus2 SINE Alu 18 146 -1 2 769 734 228 105 11 chr12 24179011 24179202 -97078328 + B3 SINE B2 2 210 -6 2 769 258 188 104 0 chr12 24179232 24179280 -97078250 - MTEb LTR MaLR -326 53 1 2 769 203 360 100 0 chr12 24179554 24179654 -97077876 - MIRb SINE MIR -45 223 114 2 769 333 82 0 0 chr12 24180167 24180216 -97077314 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 769 237 328 123 15 chr12 24180646 24180776 -97076754 + MLT1J1 LTR MaLR 283 426 -18 2 769 2118 122 0 70 chr12 24182657 24183000 -97074530 - ORR1A2 LTR MaLR -8 319 1 2 769 277 269 0 0 chr12 24183000 24183067 -97074463 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 769 1602 222 80 8 chr12 24183156 24183529 -97074001 + MTD LTR MaLR 20 419 0 2 769 1096 89 0 20 chr12 24183947 24184096 -97073434 - B1_Mus2 SINE Alu 0 147 2 2 769 474 252 18 0 chr12 24184146 24184257 -97073273 + PB1D9 SINE Alu 2 114 -6 2 769 326 244 15 0 chr12 24185145 24185228 -97072302 - B3 SINE B2 -42 156 73 2 769 838 116 0 120 chr12 24185252 24185419 -97072111 - B1_Mus1 SINE Alu 0 148 2 2 769 544 216 0 30 chr12 24185419 24185519 -97072011 - B3 SINE B2 -117 99 3 2 769 324 262 0 0 chr12 24185535 24185638 -97071892 + (CA)n Simple_repeat Simple_repeat 2 104 0 2 769 651 246 79 59 chr12 24185648 24185851 -97071679 - B3 SINE B2 0 216 10 2 769 791 171 21 7 chr12 24185991 24186132 -97071398 - B1_Mur1 SINE Alu -6 143 1 2 769 1053 337 68 67 chr12 24186394 24187086 -97070444 + MER63C DNA AcHobo 233 925 -5 2 769 429 221 92 35 chr12 24187456 24187597 -97069933 + B1F SINE Alu 1 149 0 2 769 493 185 37 0 chr12 24188740 24188848 -97068682 + Lx3B LINE L1 6862 6973 0 2 769 612 0 0 0 chr12 24189089 24189157 -97068373 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 2 769 1098 119 6 0 chr12 24189157 24189316 -97068214 - B2_Mm1a SINE B2 -33 160 1 2 769 1330 233 88 105 chr12 24189483 24189526 -97068004 - MTD LTR MaLR -3 416 375 2 769 698 190 34 47 chr12 24189526 24189675 -97067855 + B1_Mus1 SINE Alu 1 147 -1 2 769 1330 233 88 105 chr12 24189675 24189732 -97067798 - MTD LTR MaLR -45 374 355 2 769 1620 0 0 0 chr12 24189732 24189968 -97067562 + (GGGAA)n Simple_repeat Simple_repeat 1 236 0 2 769 1330 233 88 105 chr12 24189968 24190273 -97067257 - MTD LTR MaLR -65 354 17 2 769 510 46 0 0 chr12 24190415 24190480 -97067050 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2 769 572 265 0 13 chr12 24190674 24190823 -97066707 + B1_Mm SINE Alu 1 147 0 2 769 234 128 26 0 chr12 24191062 24191101 -97066429 - MLT1C LTR MaLR -279 188 149 2 769 380 230 12 62 chr12 24191190 24191325 -97066205 - B3 SINE B2 0 193 70 2 769 415 102 0 0 chr12 24191576 24191635 -97065895 - RMER6D LTR ERVK -661 59 1 2 769 219 259 74 0 chr12 24191635 24191682 -97065848 - B4A SINE B4 -212 80 30 2 769 4448 22 0 0 chr12 24191692 24192185 -97065345 - MT2_Mm LTR ERVL 0 493 1 2 769 289 0 0 0 chr12 24192185 24192219 -97065311 - MERVL-int LTR ERVL -4 5481 5448 2 769 403 167 46 35 chr12 24192219 24192306 -97065224 - ORR1A3-int LTR MaLR -1323 640 553 2 769 47671 21 8 0 chr12 24192306 24197622 -97059908 - MERVL-int LTR ERVL -125 5360 1 2 769 4487 18 0 0 chr12 24197622 24198115 -97059415 - MT2_Mm LTR ERVL 0 493 1 2 769 491 311 68 8 chr12 24198436 24198569 -97058961 + RSINE1 SINE B4 21 161 -4 2 769 650 112 122 0 chr12 24199580 24199687 -97057843 + MTC LTR MaLR 1 120 -301 2 769 294 95 0 0 chr12 24199687 24199729 -97057801 + (T)n Simple_repeat Simple_repeat 1 42 0 2 769 1279 34 0 0 chr12 24199729 24199876 -97057654 - B1_Mus2 SINE Alu 0 147 1 3 769 1904 142 19 16 chr12 24199903 24200211 -97057319 + MTC LTR MaLR 107 415 -6 2 769 188 329 92 49 chr12 24200615 24200778 -97056752 + L2b LINE L2 2791 2960 -459 3 769 1381 109 0 5 chr12 24200840 24201034 -97056496 - B2_Mm2 SINE B2 -2 193 1 3 769 356 268 80 30 chr12 24201105 24201205 -97056325 - RSINE1 SINE B4 -11 154 50 3 769 1005 163 0 0 chr12 24201292 24201439 -97056091 + B1_Mur1 SINE Alu 3 149 0 3 769 436 283 123 82 chr12 24201674 24201992 -97055538 + ORR1E LTR MaLR 1 370 0 3 769 206 314 122 44 chr12 24202000 24202090 -97055440 + L2b LINE L2 3228 3324 -51 3 769 207 146 0 0 chr12 24202327 24202368 -97055162 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 3 769 30 27 0 0 chr12 24202400 24202437 -97055093 + AT_rich Low_complexity Low_complexity 1 37 0 3 769 1310 94 16 0 chr12 24202527 24202719 -97054811 - B2_Mm2 SINE B2 0 195 1 3 769 559 256 17 0 chr12 24202720 24202837 -97054693 - RSINE1 SINE B4 -44 121 3 3 769 564 206 10 10 chr12 24203044 24203147 -97054383 - B1_Mur2 SINE Alu -40 109 7 3 769 444 37 0 0 chr12 24203176 24203230 -97054300 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 769 354 184 122 37 chr12 24203267 24203374 -97054156 - B3 SINE B2 -72 123 8 3 769 570 284 29 29 chr12 24204054 24204228 -97053302 + ID_B1 SINE B4 51 224 0 3 769 184 323 120 40 chr12 24204640 24204740 -97052790 + L3 LINE CR1 1039 1146 -3343 3 769 1725 239 45 2 chr12 24205267 24205665 -97051865 - MTD LTR MaLR -3 416 2 3 769 267 345 35 0 chr12 24205665 24205781 -97051749 + RMER15 LTR ERVL 440 559 -16 3 769 1370 293 11 32 chr12 24205956 24206296 -97051234 - ORR1D2 LTR MaLR -4 366 34 3 769 1075 145 91 10 chr12 24206296 24206505 -97051025 + URR1A DNA MER1_type 1 226 0 3 769 1370 293 11 32 chr12 24206505 24206538 -97050992 - ORR1D2 LTR MaLR -337 33 1 3 769 229 278 129 73 chr12 24206881 24207005 -97050525 + MER82 DNA MER2_type 272 402 -251 3 769 3190 105 26 2 chr12 24208215 24208681 -97048849 + RLTR44C LTR ERVK 1 477 -25 3 769 1114 201 5 0 chr12 24210276 24210490 -97047040 + B3 SINE B2 2 216 0 3 769 592 186 204 90 chr12 24210528 24210729 -97046801 - URR1B DNA MER1_type 0 225 2 3 769 1015 83 0 94 chr12 24211543 24211702 -97045828 + B1_Mus1 SINE Alu 5 148 0 3 769 306 123 0 0 chr12 24212135 24212192 -97045338 + (CCA)n Simple_repeat Simple_repeat 2 58 0 3 769 2030 158 58 32 chr12 24212251 24212629 -97044901 + MTC LTR MaLR 1 388 -33 3 769 229 289 50 50 chr12 24212952 24213032 -97044498 - MamGypLTR1c LTR Gypsy -163 640 561 3 769 282 288 53 26 chr12 24213178 24213292 -97044238 + L2c LINE L2 3218 3334 -53 3 769 1287 199 161 6 chr12 24213645 24213968 -97043562 + ORR1D1 LTR MaLR 1 373 -1 3 769 522 274 13 40 chr12 24213995 24214147 -97043383 + B1F SINE Alu 2 149 0 3 769 375 277 0 50 chr12 24214345 24214444 -97043086 + PB1D10 SINE Alu 13 106 -11 3 769 335 312 0 0 chr12 24214473 24214550 -97042980 + ID4_ SINE ID 7 83 0 3 769 719 218 18 100 chr12 24214902 24215004 -97042526 - URR1B DNA MER1_type -15 210 112 3 769 8187 25 2 3 chr12 24215004 24215934 -97041596 - RLTR13B3 LTR ERVK 0 929 1 3 769 719 218 18 100 chr12 24215934 24216060 -97041470 - URR1B DNA MER1_type -114 111 1 3 769 309 223 0 0 chr12 24216117 24216211 -97041319 + (TCCA)n Simple_repeat Simple_repeat 3 96 0 3 769 313 316 122 45 chr12 24216217 24216528 -97041002 - L1MEd LINE L1 -4902 1217 883 3 769 883 239 15 15 chr12 24216731 24216935 -97040595 + B3 SINE B2 2 205 -11 3 769 1600 206 97 3 chr12 24217467 24217828 -97039702 - MTD LTR MaLR 0 419 25 3 769 3794 239 70 58 chr12 24217837 24218981 -97038549 - MTD-int LTR MaLR -1 1257 100 3 769 2608 38 184 0 chr12 24219003 24219350 -97038180 - IAPLTR2a LTR ERVK 0 411 1 3 769 6469 57 21 12 chr12 24219352 24220174 -97037356 - IAPEz-int LTR ERVK -2 6479 5651 3 769 2765 67 0 3 chr12 24220167 24220510 -97037020 - IAPEz-int LTR ERVK -4781 1700 1359 3 769 3241 68 45 16 chr12 24220510 24221064 -97036466 - IAPEz-int LTR ERVK -5819 662 168 3 769 234 267 0 0 chr12 24221064 24221109 -97036421 - RLTR27 LTR ERVK -34 275 231 3 769 1116 140 43 63 chr12 24221111 24221394 -97036136 - IAPEz-int LTR ERVK -7323 258 9 3 769 2629 38 184 0 chr12 24221394 24221741 -97035789 - IAPLTR2a LTR ERVK 0 411 1 3 769 239 247 124 142 chr12 24221800 24221863 -97035667 - PB1D10 SINE Alu -1 116 64 3 769 949 137 0 20 chr12 24221863 24222012 -97035518 + B1_Mus1 SINE Alu 1 146 -2 3 769 239 247 124 142 chr12 24222012 24222061 -97035469 - PB1D10 SINE Alu -54 63 6 3 769 226 235 78 0 chr12 24222028 24222079 -97035451 - B4A SINE B4 -169 123 69 3 769 1014 267 18 0 chr12 24222225 24222446 -97035084 + MTEa LTR MaLR 1 225 -154 3 769 2290 184 76 0 chr12 24222722 24223183 -97034347 - RLTR1 LTR ERV1 0 624 129 3 769 214 304 54 0 chr12 24223475 24223531 -97033999 + MIRm SINE MIR 97 155 -121 3 769 355 285 50 21 chr12 24223930 24224070 -97033460 - MLT1N2 LTR MaLR -5 557 414 3 769 325 258 72 79 chr12 24224542 24224681 -97032849 + RMER10A LTR ERVL 65 202 -240 3 769 1069 103 6 6 chr12 24224728 24224904 -97032626 + (TCTCCC)n Simple_repeat Simple_repeat 3 178 0 3 769 876 28 0 0 chr12 24225158 24225265 -97032265 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 769 424 254 138 21 chr12 24225278 24225423 -97032107 - RSINE1 SINE B4 -2 163 2 3 769 5995 71 36 5 chr12 24225941 24226725 -97030805 + RLTR13C2 LTR ERVK 1 808 0 3 769 1620 220 57 47 chr12 24226844 24227039 -97030491 + MTD LTR MaLR 1 191 -228 3 769 749 276 28 32 chr12 24227039 24227256 -97030274 + B3 SINE B2 1 216 0 3 769 1620 220 57 47 chr12 24227256 24227461 -97030069 + MTD LTR MaLR 192 405 -14 3 769 850 137 0 67 chr12 24227846 24227995 -97029535 + B1_Mus1 SINE Alu 10 148 0 3 769 240 188 37 24 chr12 24227997 24228079 -97029451 + (CAAA)n Simple_repeat Simple_repeat 1 83 0 3 769 629 247 73 68 chr12 24228087 24228278 -97029252 + B3 SINE B2 2 193 -23 3 769 681 254 25 66 chr12 24228329 24228349 -97029181 - B3A SINE B2 -8 190 178 3 769 837 71 0 0 chr12 24228349 24228475 -97029055 + (TG)n Simple_repeat Simple_repeat 1 126 0 3 769 681 254 25 66 chr12 24228475 24228652 -97028878 - B3A SINE B2 -21 177 1 3 769 527 241 28 7 chr12 24228669 24228811 -97028719 + L1MD LINE L1 5422 5566 -676 3 769 1297 191 180 140 chr12 24228812 24229256 -97028274 + MT2A LTR ERVL 1 462 -71 3 769 237 292 27 127 chr12 24229178 24229288 -97028242 + RMER21A LTR ERV1 576 674 -273 3 769 3664 81 36 6 chr12 24229366 24229560 -97027970 - RLTR1B LTR ERV1 0 512 321 3 769 327 65 0 0 chr12 24229560 24229606 -97027924 + (CTGGGG)n Simple_repeat Simple_repeat 1 46 0 3 769 3664 81 36 6 chr12 24229606 24229908 -97027622 - RLTR1B LTR ERV1 -192 320 3 3 769 790 117 0 42 chr12 24229908 24230041 -97027489 - RMER17D2 LTR ERVK -9 800 673 3 769 805 93 34 0 chr12 24230044 24230162 -97027368 - RMER17D2 LTR ERVK -687 122 1 3 769 347 319 177 0 chr12 24230169 24230282 -97027248 + RSINE1 SINE B4 4 136 -29 3 769 542 342 39 3 chr12 24230332 24230577 -97026953 + L1MD LINE L1 5597 5848 -2147 3 769 423 0 0 0 chr12 24230597 24230644 -97026886 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 769 219 36 0 0 chr12 24230644 24230671 -97026859 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 769 997 109 0 0 chr12 24230737 24230875 -97026655 - B1_Mus1 SINE Alu -10 138 1 3 769 258 32 0 0 chr12 24230898 24230929 -97026601 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 769 654 307 10 50 chr12 24230930 24231129 -97026401 - ID_B1 SINE B4 -11 213 23 3 769 740 243 26 107 chr12 24231337 24231715 -97025815 + RLTR46 LTR ERVK 1 357 0 3 769 498 17 0 0 chr12 24233725 24233784 -97023746 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 769 3433 33 3 0 chr12 24233784 24234176 -97023354 + MTA_Mm LTR MaLR 4 396 0 3 769 8988 51 3 0 chr12 24234176 24235271 -97022259 + MTA_Mm-int LTR MaLR 1 1098 0 3 769 3334 53 2 0 chr12 24235271 24235666 -97021864 + MTA_Mm LTR MaLR 1 396 0 3 769 230 140 0 39 chr12 24235680 24235732 -97021798 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 3 769 180 0 0 0 chr12 24235891 24235911 -97021619 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 3 769 1060 96 6 6 chr12 24235915 24236093 -97021437 + (TC)n Simple_repeat Simple_repeat 2 179 0 3 769 270 317 94 31 chr12 24236153 24236280 -97021250 - MLT1F2 LTR MaLR -284 276 142 3 769 27 49 0 0 chr12 24236340 24236381 -97021149 + AT_rich Low_complexity Low_complexity 1 41 0 3 769 743 199 28 0 chr12 24236381 24236522 -97021008 - B1_Mus1 SINE Alu -1 147 3 3 769 187 133 0 43 chr12 24236863 24236910 -97020620 + C-rich Low_complexity Low_complexity 1 45 0 3 769 320 299 124 0 chr12 24236912 24237049 -97020481 - HAL1-3A_ME LINE L1 -420 2438 2285 3 769 835 176 169 11 chr12 24237910 24238099 -97019431 - URR1A DNA MER1_type -6 220 2 3 769 794 264 19 30 chr12 24238100 24238390 -97019140 + MTE2a LTR MaLR 35 374 -5 3 769 1271 14 0 0 chr12 24238694 24238840 -97018690 - MT2_Mm LTR ERVL 0 493 348 3 769 275 250 0 29 chr12 24239044 24239114 -97018416 + MT2A LTR ERVL 9 76 -457 3 769 182 274 12 142 chr12 24239540 24239637 -97017893 - MIRb SINE MIR -105 163 80 3 769 958 112 0 7 chr12 24240231 24240375 -97017155 + URR1B DNA MER1_type 83 225 0 3 769 671 302 45 35 chr12 24240657 24240945 -97016585 - B4A SINE B4 0 292 2 3 769 304 346 118 20 chr12 24240958 24241123 -97016407 - L1MD2 LINE L1 -7 6352 6174 3 769 417 39 0 0 chr12 24241123 24241174 -97016356 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 769 304 346 118 20 chr12 24241174 24241253 -97016277 - L1MD2 LINE L1 -186 6173 6085 3 769 214 325 6 63 chr12 24241333 24241507 -97016023 + (TCCTG)n Simple_repeat Simple_repeat 2 165 0 3 769 233 319 98 32 chr12 24242310 24242416 -97015114 + MIRc SINE MIR 2 113 -155 3 769 388 289 29 0 chr12 24242430 24242534 -97014996 - PB1D7 SINE Alu -6 114 8 3 769 215 277 105 46 chr12 24242731 24242919 -97014611 - L2b LINE L2 -229 3158 2963 3 769 810 217 30 18 chr12 24242922 24243086 -97014444 + B3A SINE B2 3 168 -30 3 769 592 252 0 43 chr12 24243650 24243848 -97013682 - B3 SINE B2 0 195 18 3 769 422 258 73 24 chr12 24243882 24244005 -97013525 - B1F1 SINE Alu 0 149 21 3 769 486 185 12 0 chr12 24244003 24244084 -97013446 - RSINE1 SINE B4 -31 134 53 3 769 395 218 0 0 chr12 24244089 24244167 -97013363 - PB1D10 SINE Alu 0 117 40 4 769 584 131 0 0 chr12 24244249 24244333 -97013197 + B2_Mm2 SINE B2 3 86 -109 4 769 639 0 0 0 chr12 24244333 24244404 -97013126 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 769 436 215 20 61 chr12 24244404 24244418 -97013112 + B3A SINE B2 89 97 -101 4 769 2583 116 7 25 chr12 24244475 24244615 -97012915 + RLTR9E LTR ERVK 3 140 -269 4 769 2624 111 24 157 chr12 24244615 24245206 -97012324 - RLTR1B LTR ERV1 0 512 1 4 769 2583 116 7 25 chr12 24245206 24245473 -97012057 + RLTR9E LTR ERVK 141 403 -6 4 769 7907 203 37 22 chr12 24245480 24245758 -97011772 + ETnERV2-int LTR ERVK 2 283 -3031 4 769 1246 47 18 6 chr12 24245758 24245928 -97011602 - L1Md_F2 LINE L1 -4 6578 6407 4 96 16396 201 43 29 chr12 24245928 24251341 -97006189 + ETnERV2-int LTR ERVK 284 6426 -980 4 770 451 132 0 62 chr12 24251554 24251635 -97005895 + ETnERV2-int LTR ERVK 7331 7406 0 4 770 2636 112 7 12 chr12 24251635 24252041 -97005489 + RLTR9E LTR ERVK 1 404 -5 4 770 483 187 58 102 chr12 24252048 24252185 -97005345 + ETnERV2-int LTR ERVK 2 132 -3182 4 770 348 103 0 0 chr12 24253583 24253641 -97003889 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 4 770 264 359 39 79 chr12 24253657 24253784 -97003746 - RSINE1 SINE B4 -10 155 34 4 770 786 209 175 104 chr12 24253891 24254200 -97003330 - MTE2a LTR MaLR -14 365 35 4 770 1356 167 0 5 chr12 24254203 24254426 -97003104 - URR1B DNA MER1_type -3 222 1 4 770 944 152 14 0 chr12 24254457 24254602 -97002928 + B1_Mus1 SINE Alu 1 147 -1 4 770 753 222 99 11 chr12 24254631 24254822 -97002708 + B3 SINE B2 3 210 -6 4 770 275 104 102 20 chr12 24254852 24254901 -97002629 - MTEa LTR MaLR -326 53 1 4 770 494 216 71 18 chr12 24255975 24256088 -97001442 + MTC LTR MaLR 1 119 -302 4 770 237 197 0 0 chr12 24256089 24256160 -97001370 + CT-rich Low_complexity Low_complexity 2 72 0 4 770 755 156 49 21 chr12 24256185 24256329 -97001201 - B1_Mur3 SINE Alu 0 149 2 4 770 1866 158 10 10 chr12 24256332 24256646 -97000884 + MTC LTR MaLR 108 421 0 4 770 197 330 71 9 chr12 24256649 24256762 -97000768 - MIRb SINE MIR -126 142 23 4 770 222 242 0 46 chr12 24256870 24256935 -97000595 + C-rich Low_complexity Low_complexity 5 66 0 4 770 261 304 12 25 chr12 24257377 24257458 -97000072 + MER2 DNA MER2_type 7 86 -259 4 770 709 240 0 0 chr12 24257594 24257723 -96999807 - RSINE1 SINE B4 -34 131 3 4 770 741 232 55 30 chr12 24257951 24258151 -96999379 - B4A SINE B4 -86 206 2 4 770 1377 143 9 18 chr12 24258969 24259197 -96998333 - URR1A DNA MER1_type 0 226 1 4 770 718 235 17 28 chr12 24260682 24260848 -96996682 + ID_B1 SINE B4 77 248 -44 4 770 542 205 56 32 chr12 24260857 24260983 -96996547 + B1_Mur3 SINE Alu 9 137 -12 4 770 189 121 0 0 chr12 24260993 24261026 -96996504 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 770 218 175 0 0 chr12 24261026 24261066 -96996464 + GA-rich Low_complexity Low_complexity 1 40 0 4 770 2410 86 0 51 chr12 24261292 24261646 -96995884 - RLTR10D LTR ERVK -23 336 1 4 770 12224 63 23 1 chr12 24261646 24263162 -96994368 - IAP-d-int LTR ERVK 0 6542 4993 4 770 8326 65 1 24 chr12 24263161 24264225 -96993305 - IAP-d-int LTR ERVK -5486 1056 17 4 770 258 269 121 40 chr12 24264226 24264241 -96993289 - B1F SINE Alu -15 134 120 4 770 2476 114 0 45 chr12 24264241 24264617 -96992913 - RLTR10D LTR ERVK 0 359 1 4 770 258 269 121 40 chr12 24264617 24264725 -96992805 - B1F SINE Alu -30 119 1 4 770 899 73 8 0 chr12 24264770 24264893 -96992637 - B1_Mm SINE Alu 0 147 24 4 770 635 266 33 28 chr12 24264972 24265154 -96992376 - B3 SINE B2 0 216 34 4 770 409 235 0 9 chr12 24265304 24265418 -96992112 + PB1D7 SINE Alu 9 120 0 4 770 386 212 10 0 chr12 24266133 24266232 -96991298 + GA-rich Low_complexity Low_complexity 1 100 0 4 770 453 36 0 0 chr12 24267167 24267222 -96990308 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 770 225 315 126 37 chr12 24267650 24267785 -96989745 + MLT1J2 LTR MaLR 286 432 -16 4 770 8997 274 59 55 chr12 24268407 24272106 -96985424 + RLTR6-int LTR ERV1 4064 7778 0 4 770 2149 198 20 39 chr12 24272182 24272640 -96984890 + RLTR1D LTR ERV1 157 605 0 4 770 210 217 0 0 chr12 24273900 24273969 -96983561 + CT-rich Low_complexity Low_complexity 1 69 0 4 770 1061 183 27 5 chr12 24274186 24274405 -96983125 + URR1B DNA MER1_type 1 224 -1 4 770 296 287 46 15 chr12 24274456 24274587 -96982943 + MER33 DNA MER1_type 190 324 0 4 770 201 139 0 0 chr12 24275036 24275079 -96982451 + (T)n Simple_repeat Simple_repeat 1 43 0 4 770 498 297 25 19 chr12 24275102 24275260 -96982270 + RSINE1 SINE B4 1 159 -6 4 770 477 0 0 0 chr12 24275970 24276023 -96981507 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 770 2356 87 0 69 chr12 24276034 24276381 -96981149 - ORR1A2 LTR MaLR -4 323 1 4 770 261 279 0 0 chr12 24276381 24276449 -96981081 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 770 845 175 0 0 chr12 24276535 24276672 -96980858 - B1_Mur4 SINE Alu -13 137 1 4 770 477 282 45 104 chr12 24276673 24276875 -96980655 - B3A SINE B2 -1 194 5 4 770 664 287 10 67 chr12 24276895 24277104 -96980426 - B4A SINE B4 -72 220 24 4 770 905 189 32 42 chr12 24278011 24278227 -96979303 - ID_B1 SINE B4 -8 216 3 4 770 783 176 8 6 chr12 24278256 24278403 -96979127 - B1_Mur4 SINE Alu -7 141 1 4 770 340 210 72 24 chr12 24278405 24278488 -96979042 - PB1D10 SINE Alu -14 103 17 4 770 192 40 0 0 chr12 24279782 24279807 -96977723 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 770 197 310 75 37 chr12 24280374 24280508 -96977022 + L2a LINE L2 3097 3235 -191 4 770 238 250 17 0 chr12 24281956 24282016 -96975514 + (TATG)n Simple_repeat Simple_repeat 4 64 0 4 770 438 20 0 0 chr12 24282016 24282067 -96975463 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 770 441 0 0 0 chr12 24282067 24282115 -96975415 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 770 349 286 50 66 chr12 24282554 24282752 -96974778 - RLTR46 LTR ERVK 0 320 126 4 770 38183 181 28 18 chr12 24282880 24286353 -96971177 - IAPEY3-int LTR ERVK 0 7680 4112 4 770 190 200 62 124 chr12 24286353 24286450 -96971080 - L3 LINE CR1 -460 4029 3939 4 770 38183 181 28 18 chr12 24286450 24290209 -96967321 - IAPEY3-int LTR ERVK 0 4111 246 4 770 291 240 13 13 chr12 24290194 24290270 -96967260 - IAPLTR3-int LTR ERVK -6375 446 371 4 770 349 286 50 66 chr12 24290548 24290746 -96966784 - RLTR46 LTR ERVK 0 320 126 4 770 227 326 95 47 chr12 24291015 24291205 -96966325 - MIRb SINE MIR -66 202 4 4 770 739 272 23 0 chr12 24291592 24291765 -96965765 - B3A SINE B2 -21 177 1 4 770 2349 88 41 3 chr12 24291773 24292114 -96965416 - L1_Mus3 LINE L1 -6 6632 6279 4 770 356 153 41 14 chr12 24292124 24292197 -96965333 - L1MC1 LINE L1 0 6333 6259 4 770 453 188 32 7 chr12 24292873 24293028 -96964502 + (TG)n Simple_repeat Simple_repeat 1 159 0 4 770 182 174 22 0 chr12 24293062 24293108 -96964422 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 770 445 204 23 6 chr12 24293127 24293300 -96964230 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 770 345 227 38 31 chr12 24293455 24293614 -96963916 + A-rich Low_complexity Low_complexity 5 164 0 4 770 688 296 48 105 chr12 24293632 24293772 -96963758 - RLTR11A2 LTR ERVK -63 464 335 4 770 1168 70 0 0 chr12 24293772 24293914 -96963616 - B1_Mm SINE Alu -5 142 1 4 770 688 296 48 105 chr12 24293914 24294124 -96963406 - RLTR11A2 LTR ERVK -193 334 134 4 770 442 163 26 22 chr12 24294295 24294567 -96962963 + (TAGA)n Simple_repeat Simple_repeat 1 273 0 4 770 586 242 52 12 chr12 24294640 24294814 -96962716 + Lx2B LINE L1 6623 6796 -212 4 770 38 0 0 0 chr12 24294825 24294863 -96962667 + AT_rich Low_complexity Low_complexity 1 38 0 4 770 231 88 0 0 chr12 24294945 24294979 -96962551 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 4 770 443 187 23 0 chr12 24294985 24295156 -96962374 + (TA)n Simple_repeat Simple_repeat 1 175 0 4 770 416 211 18 0 chr12 24295156 24295265 -96962265 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 4 770 520 248 80 9 chr12 24295307 24295477 -96962053 + Lx2B LINE L1 6625 6805 -171 4 770 25 0 0 0 chr12 24295488 24295513 -96962017 + AT_rich Low_complexity Low_complexity 1 25 0 4 770 294 95 0 0 chr12 24295531 24295573 -96961957 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 770 1501 249 64 87 chr12 24296170 24296962 -96960568 + L1_Mur2 LINE L1 1002 1773 -4107 4 770 1217 48 0 14 chr12 24296962 24297109 -96960421 + B1_Mm SINE Alu 2 146 -1 4 770 1501 246 56 120 chr12 24297109 24297539 -96959991 + L1_Mur2 LINE L1 1774 2127 -3753 4 770 887 121 15 0 chr12 24297747 24297879 -96959651 - B1_Mus1 SINE Alu -13 135 2 4 770 330 269 0 0 chr12 24298176 24298254 -96959276 - ORR1C2 LTR MaLR -14 370 293 4 770 245 316 82 46 chr12 24298466 24298748 -96958782 - MurSatRep1 Unknown Unknown -1 2136 1845 4 770 369 298 11 8 chr12 24298550 24298759 -96958771 - MMSAT4 Satellite Satellite 0 209 1 4 770 3124 79 0 2 chr12 24298783 24299189 -96958341 - L1_Mus1 LINE L1 0 6567 6163 4 770 376 281 30 22 chr12 24299239 24299625 -96957905 - MMSAT4 Satellite Satellite 0 389 1 4 770 530 317 50 33 chr12 24299568 24300326 -96957204 - MurSatRep1 Unknown Unknown 0 2137 1815 4 770 508 281 0 0 chr12 24300326 24300465 -96957065 - MMSAT4 Satellite Satellite 0 168 30 4 770 530 317 50 33 chr12 24300465 24300623 -96956907 - MurSatRep1 Unknown Unknown 0 1814 1747 4 770 411 302 0 0 chr12 24300578 24300717 -96956813 - MMSAT4 Satellite Satellite 0 168 30 4 770 554 322 45 30 chr12 24300657 24301128 -96956402 - MurSatRep1 Unknown Unknown 0 2137 1747 4 770 7946 198 95 34 chr12 24301334 24302135 -96955395 - MurSatRep1 Unknown Unknown -2 2135 1331 4 770 505 34 0 54 chr12 24302135 24302228 -96955302 + (TTATA)n Simple_repeat Simple_repeat 5 92 0 4 770 7946 198 95 34 chr12 24302228 24302440 -96955090 - MurSatRep1 Unknown Unknown -807 1330 1120 4 770 1435 71 5 0 chr12 24302440 24302624 -96954906 + B2_Mm1a SINE B2 2 186 -7 4 770 7946 198 95 34 chr12 24302624 24303470 -96954060 - MurSatRep1 Unknown Unknown -1018 1119 177 4 770 308 323 65 0 chr12 24303470 24303594 -96953936 + B1_Mur2 SINE Alu 1 132 -17 4 770 7946 198 95 34 chr12 24303594 24303743 -96953787 - MurSatRep1 Unknown Unknown -1961 176 3 4 770 272 279 12 48 chr12 24303838 24303921 -96953609 + B3 SINE B2 4 83 -133 4 770 290 262 9 36 chr12 24304174 24304285 -96953245 + Lx4A LINE L1 6947 7054 -4 4 770 203 189 0 0 chr12 24304294 24304331 -96953199 + A-rich Low_complexity Low_complexity 1 37 0 4 770 1553 322 33 60 chr12 24304390 24305110 -96952420 - ORR1D-int LTR MaLR -108 1262 562 4 770 6106 221 23 16 chr12 24305120 24306528 -96951002 + Lx4B LINE L1 5637 7054 -4 4 770 931 110 0 40 chr12 24306535 24306687 -96950843 + B1_Mus2 SINE Alu 1 146 -1 5 770 409 362 52 60 chr12 24306732 24306814 -96950716 - ORR1D-int LTR MaLR -1219 361 286 4 770 402 39 0 0 chr12 24306814 24306866 -96950664 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 5 770 409 362 52 60 chr12 24306866 24307015 -96950515 - ORR1D-int LTR MaLR -1295 285 132 4 770 417 271 19 34 chr12 24308172 24308378 -96949152 + L1_Mur3 LINE L1 904 1106 -6622 5 770 450 280 125 3 chr12 24308673 24309121 -96948409 + L1_Mur3 LINE L1 1314 1836 -4044 5 770 5316 116 15 50 chr12 24309682 24310601 -96946929 + RMER17D LTR ERVK 1 887 -2 5 770 283 312 54 71 chr12 24311006 24311230 -96946300 - MT2B LTR ERVL 0 601 382 5 770 311 192 14 0 chr12 24311315 24311388 -96946142 + CT-rich Low_complexity Low_complexity 3 76 0 5 770 257 281 202 8 chr12 24311457 24311586 -96945944 - Lx8 LINE L1 -342 7131 6978 5 770 693 260 66 24 chr12 24311898 24312111 -96945419 + ID_B1 SINE B4 1 222 -2 5 770 820 188 174 0 chr12 24312443 24312667 -96944863 - Lx9 LINE L1 0 7644 7382 5 770 1003 109 0 0 chr12 24312721 24312859 -96944671 + B1_Mm SINE Alu 1 138 -9 5 770 205 111 18 36 chr12 24312879 24312935 -96944595 + A-rich Low_complexity Low_complexity 1 55 0 5 770 525 282 34 28 chr12 24313200 24313388 -96944142 + B3A SINE B2 3 190 -5 5 770 228 229 22 67 chr12 24313785 24313874 -96943656 + MER5B DNA MER1_type 32 116 -62 5 770 325 325 98 13 chr12 24313948 24314101 -96943429 - MER5A1 DNA MER1_type 0 166 1 5 770 253 394 15 30 chr12 24314111 24314242 -96943288 + MER3 DNA MER1_type 3 131 -78 5 770 256 289 0 40 chr12 24315886 24315987 -96941543 + B4A SINE B4 1 97 -195 5 770 462 75 0 0 chr12 24316048 24316115 -96941415 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 770 193 281 164 11 chr12 24316487 24316574 -96940956 + MIRm SINE MIR 58 161 -115 5 770 1590 52 0 10 chr12 24316668 24316863 -96940667 + B2_Mm1a SINE B2 1 193 0 5 770 2111 174 119 78 chr12 24319844 24320405 -96937125 - RLTR6_Mm LTR ERV1 -70 584 1 5 770 66366 32 17 1 chr12 24320405 24328055 -96929475 - RLTR6-int LTR ERV1 0 7778 1 5 770 2235 117 240 44 chr12 24328056 24328531 -96928999 - RLTR6_Mm LTR ERV1 -50 604 37 5 770 254 248 200 38 chr12 24328533 24328638 -96928892 - RLTR6_Mm LTR ERV1 -532 122 1 5 770 950 137 3 0 chr12 24330079 24330381 -96927149 + (CA)n Simple_repeat Simple_repeat 1 303 0 5 770 352 247 12 0 chr12 24330444 24330525 -96927005 - ID2 SINE ID 0 83 2 5 770 24 67 0 0 chr12 24330598 24330643 -96926887 + AT_rich Low_complexity Low_complexity 1 45 0 5 770 734 194 0 21 chr12 24330649 24330791 -96926739 + B1_Mur3 SINE Alu 5 143 -6 5 770 500 342 39 13 chr12 24330809 24331043 -96926487 + MER46C DNA MER2_type 92 331 -7 5 770 1519 219 83 8 chr12 24331268 24331654 -96925876 + MTD LTR MaLR 5 419 0 5 770 1127 89 0 20 chr12 24332071 24332220 -96925310 - B1_Mus2 SINE Alu 0 147 2 5 770 507 241 9 0 chr12 24332270 24332382 -96925148 + PB1D9 SINE Alu 2 114 -6 5 770 423 190 190 117 chr12 24333277 24333336 -96924194 - B3 SINE B2 -67 149 88 5 770 904 112 27 20 chr12 24333336 24333482 -96924048 - B1_Mus1 SINE Alu 0 148 2 5 770 423 190 190 117 chr12 24333482 24333559 -96923971 - B3 SINE B2 -129 87 3 5 770 249 234 0 0 chr12 24333610 24333674 -96923856 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 770 676 250 68 15 chr12 24333682 24333885 -96923645 - B3 SINE B2 -1 215 13 5 770 742 186 21 7 chr12 24334028 24334169 -96923361 - B1_Mur1 SINE Alu -6 143 1 5 770 1008 301 124 21 chr12 24334431 24334849 -96922681 + MER63C DNA AcHobo 233 693 -237 5 770 235 290 52 41 chr12 24334784 24334881 -96922649 - MER63D DNA AcHobo -427 634 537 5 770 537 297 34 11 chr12 24334927 24335103 -96922427 + MER63C DNA AcHobo 698 877 -53 5 770 2338 61 29 3 chr12 24335103 24335414 -96922116 + IAPLTR2b LTR ERVK 1 319 -8 5 770 396 250 92 35 chr12 24335835 24335976 -96921554 + B1F SINE Alu 1 149 0 5 770 1116 93 0 18 chr12 24336618 24336903 -96920627 + (TTTC)n Simple_repeat Simple_repeat 1 279 0 5 770 1125 83 7 0 chr12 24336905 24337049 -96920481 - B1_Mm SINE Alu 0 147 3 5 770 525 167 37 0 chr12 24337589 24337697 -96919833 + Lx3B LINE L1 6862 6973 0 5 770 396 0 0 0 chr12 24337933 24337977 -96919553 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 5 770 838 77 200 0 chr12 24337977 24338107 -96919423 - B2_Mm1a SINE B2 -33 160 5 5 770 276 194 153 0 chr12 24338600 24338672 -96918858 + MER5A1 DNA MER1_type 13 95 -71 5 770 593 242 50 128 chr12 24338904 24339122 -96918408 - ID_B1 SINE B4 -22 202 2 5 770 323 294 135 35 chr12 24339127 24339356 -96918174 - L2b LINE L2 -184 3242 2991 5 770 687 281 92 42 chr12 24340025 24340263 -96917267 + B4A SINE B4 5 254 -38 5 770 489 61 24 12 chr12 24340292 24340375 -96917155 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 770 306 93 0 0 chr12 24340913 24340956 -96916574 - MTC LTR MaLR -287 134 92 5 770 1527 204 89 87 chr12 24341177 24341223 -96916307 - MTD LTR MaLR 0 419 377 5 770 683 189 33 53 chr12 24341223 24341374 -96916156 + B1_Mus1 SINE Alu 1 148 0 5 770 1527 204 89 87 chr12 24341374 24341730 -96915800 - MTD LTR MaLR -43 376 16 5 770 1174 20 13 0 chr12 24341872 24342021 -96915509 + (TAGA)n Simple_repeat Simple_repeat 2 152 0 5 770 557 254 14 28 chr12 24342201 24342343 -96915187 + B1_Mm SINE Alu 1 140 -7 5 770 367 242 12 62 chr12 24342715 24342850 -96914680 - B3 SINE B2 0 193 70 5 770 411 103 0 0 chr12 24343102 24343160 -96914370 - RMER6D LTR ERVK -662 58 1 5 770 211 291 74 25 chr12 24343160 24343234 -96914296 - B4A SINE B4 -212 80 3 5 770 497 321 69 0 chr12 24343531 24343662 -96913868 + RSINE1 SINE B4 22 161 -4 5 770 629 112 120 9 chr12 24344674 24344782 -96912748 + MTC LTR MaLR 1 120 -301 5 770 204 125 0 0 chr12 24344782 24344814 -96912716 + (T)n Simple_repeat Simple_repeat 1 32 0 5 770 1261 41 0 0 chr12 24344814 24344961 -96912569 - B1_Mus2 SINE Alu 0 147 1 5 770 1938 132 23 16 chr12 24344988 24345295 -96912235 + MTC LTR MaLR 107 415 -6 5 770 1355 110 0 5 chr12 24345924 24346116 -96911414 - B2_Mm2 SINE B2 -4 191 1 5 770 277 280 13 13 chr12 24346206 24346282 -96911248 - RSINE1 SINE B4 -40 125 50 5 770 992 163 0 0 chr12 24346369 24346516 -96911014 + B1_Mur1 SINE Alu 3 149 0 5 770 336 281 103 68 chr12 24346750 24347065 -96910465 + ORR1E LTR MaLR 1 359 0 5 770 215 302 122 44 chr12 24347073 24347163 -96910367 + L2b LINE L2 3228 3324 -51 5 770 603 0 0 0 chr12 24347203 24347270 -96910260 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 770 228 316 13 13 chr12 24347479 24347556 -96909974 - ID2 SINE ID -5 78 2 5 770 219 146 0 0 chr12 24348046 24348087 -96909443 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 5 770 21 71 0 0 chr12 24348112 24348154 -96909376 + AT_rich Low_complexity Low_complexity 1 42 0 5 770 1328 89 16 0 chr12 24348249 24348439 -96909091 - B2_Mm2 SINE B2 -2 193 1 5 770 514 274 17 0 chr12 24348440 24348557 -96908973 - RSINE1 SINE B4 -44 121 3 5 770 596 172 10 10 chr12 24348764 24348864 -96908666 - B1_Mur2 SINE Alu -40 109 10 5 770 399 264 121 97 chr12 24348874 24349094 -96908436 - B3A SINE B2 0 216 8 5 770 549 290 29 29 chr12 24349768 24349942 -96907588 + ID_B1 SINE B4 51 224 0 5 770 180 297 139 66 chr12 24350290 24350456 -96907074 + L3 LINE CR1 969 1146 -3343 5 770 1563 257 67 3 chr12 24350985 24351375 -96906155 - MTD LTR MaLR -3 416 2 5 770 250 353 35 0 chr12 24351375 24351491 -96906039 + RMER15 LTR ERVL 440 559 -16 5 770 1477 271 11 32 chr12 24351664 24352004 -96905526 - ORR1D2 LTR MaLR -4 366 28 5 770 1160 153 76 9 chr12 24352004 24352215 -96905315 + URR1B DNA MER1_type 1 225 0 5 770 1477 271 11 32 chr12 24352215 24352248 -96905282 - ORR1D2 LTR MaLR -343 27 1 5 770 225 315 0 61 chr12 24354483 24354581 -96902949 - MLT1K LTR MaLR 0 595 504 5 770 1079 196 29 0 chr12 24355527 24355736 -96901794 + B3 SINE B2 2 216 0 5 770 715 148 208 99 chr12 24355774 24355976 -96901554 - URR1B DNA MER1_type 0 225 2 5 770 1161 68 0 39 chr12 24356785 24356939 -96900591 + B1_Mus1 SINE Alu 1 148 0 5 770 207 152 0 0 chr12 24357380 24357426 -96900104 + (CCA)n Simple_repeat Simple_repeat 1 46 0 5 770 2032 149 70 32 chr12 24357497 24357871 -96899659 + MTC LTR MaLR 1 388 -33 5 770 241 273 61 43 chr12 24358419 24358534 -96898996 + L2c LINE L2 3218 3334 -53 5 770 1257 210 168 6 chr12 24358887 24359208 -96898322 + ORR1D1 LTR MaLR 1 373 -1 5 770 436 288 13 40 chr12 24359235 24359387 -96898143 + B1F SINE Alu 2 149 0 5 770 353 287 0 41 chr12 24359586 24359684 -96897846 + PB1D10 SINE Alu 13 106 -11 5 770 706 101 60 200 chr12 24360138 24360271 -96897259 - URR1A DNA MER1_type 0 226 102 5 770 868 99 13 84 chr12 24360271 24360425 -96897105 - B1_Mm SINE Alu 0 147 5 5 770 706 144 77 152 chr12 24360425 24360507 -96897023 - URR1A DNA MER1_type -125 101 4 5 770 884 234 15 19 chr12 24360881 24361086 -96896444 + B3 SINE B2 2 205 -11 5 770 810 158 7 0 chr12 24361474 24361620 -96895910 - B1_Mus1 SINE Alu -1 147 1 5 770 872 201 0 0 chr12 24361667 24361811 -96895719 + B1_Mur1 SINE Alu 1 144 -5 5 770 270 324 40 0 chr12 24361826 24361900 -96895630 + ID4_ SINE ID 1 77 -6 5 770 239 350 68 0 chr12 24361900 24361929 -96895601 + ID_B1 SINE B4 1 110 -114 5 770 1318 44 0 19 chr12 24361949 24362156 -96895374 + (TAGA)n Simple_repeat Simple_repeat 1 203 0 5 770 795 66 0 0 chr12 24362158 24362264 -96895266 + (GAAA)n Simple_repeat Simple_repeat 4 109 0 5 770 572 246 113 45 chr12 24362753 24362974 -96894556 - B4A SINE B4 -54 238 3 5 770 403 292 54 126 chr12 24362999 24363113 -96894417 + MLT1B LTR MaLR 160 253 -137 6 770 2622 83 39 10 chr12 24363113 24363502 -96894028 - MTB LTR MaLR 0 400 1 6 770 403 292 54 126 chr12 24363502 24363626 -96893904 + MLT1B LTR MaLR 254 381 -9 6 770 386 259 214 14 chr12 24363704 24363766 -96893764 - ID_B1 SINE B4 0 224 150 6 770 963 138 7 0 chr12 24363766 24363911 -96893619 + B1_Mus2 SINE Alu 1 146 -1 6 770 386 259 214 14 chr12 24363911 24363993 -96893537 - ID_B1 SINE B4 -75 149 51 6 770 942 279 13 17 chr12 24364128 24364358 -96893172 + MTEa LTR MaLR 1 229 -150 6 770 1062 188 16 0 chr12 24364739 24364925 -96892605 - RLTR1D LTR ERV1 0 605 417 6 770 3120 20 0 0 chr12 24364925 24365271 -96892259 - ORR1A0 LTR MaLR 0 346 1 6 770 7983 158 9 180 chr12 24365271 24367531 -96889999 - ORR1A0-int LTR MaLR 0 1963 90 6 770 602 213 199 47 chr12 24367531 24367767 -96889763 - RLTR10A LTR ERVK 0 411 140 6 770 740 77 0 0 chr12 24367808 24367912 -96889618 - ORR1A0-int LTR MaLR -1688 104 1 6 770 3059 23 6 0 chr12 24367912 24368256 -96889274 - ORR1A0 LTR MaLR 0 346 1 6 770 2240 98 9 3 chr12 24368256 24368575 -96888955 - RLTR1C LTR ERV1 -182 321 1 6 770 214 286 54 0 chr12 24368674 24368730 -96888800 + MIRm SINE MIR 97 155 -121 6 770 263 272 64 35 chr12 24369123 24369191 -96888339 - MLT1N2 LTR MaLR -5 557 494 6 770 240 35 0 0 chr12 24369191 24369220 -96888310 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 770 263 272 64 35 chr12 24369220 24369292 -96888238 - MLT1N2 LTR MaLR -69 493 413 6 770 604 245 148 71 chr12 24370209 24370408 -96887122 + RMER10A LTR ERVL 65 266 -176 6 770 1119 129 0 0 chr12 24370408 24370586 -96886944 + (TTC)n Simple_repeat Simple_repeat 2 179 0 6 770 604 245 148 71 chr12 24370586 24370737 -96886793 + RMER10A LTR ERVL 267 442 0 6 770 399 268 139 14 chr12 24370881 24371025 -96886505 - RSINE1 SINE B4 -2 163 2 6 770 751 210 108 22 chr12 24371648 24371833 -96885697 + MTD LTR MaLR 1 201 -218 6 770 789 252 60 10 chr12 24371843 24372020 -96885510 + B3 SINE B2 1 189 -27 6 770 642 60 0 0 chr12 24372020 24372103 -96885427 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 6 770 789 252 60 10 chr12 24372103 24372125 -96885405 + B3 SINE B2 190 209 -7 6 770 894 233 38 34 chr12 24372138 24372347 -96885183 + MTD LTR MaLR 196 405 -14 6 770 809 143 6 120 chr12 24372766 24372933 -96884597 + B1_Mus1 SINE Alu 1 148 0 6 770 296 290 9 78 chr12 24372832 24372948 -96884582 + RLTR25B LTR ERVK 448 555 -473 6 770 972 130 0 7 chr12 24373023 24373170 -96884360 + B1_Mus1 SINE Alu 2 147 -1 6 770 966 18 0 0 chr12 24373172 24373284 -96884246 + (GAAAA)n Simple_repeat Simple_repeat 2 113 0 6 770 585 244 85 69 chr12 24373299 24373488 -96884042 + B3 SINE B2 2 193 -23 6 770 772 257 16 21 chr12 24373539 24373559 -96883971 - B3A SINE B2 -8 190 172 6 770 885 35 0 0 chr12 24373559 24373672 -96883858 + (TG)n Simple_repeat Simple_repeat 2 114 0 6 770 772 257 16 21 chr12 24373672 24373842 -96883688 - B3A SINE B2 -27 171 1 6 770 568 250 26 0 chr12 24373856 24374008 -96883522 + L1MD LINE L1 5417 5572 -670 6 770 586 204 273 19 chr12 24374009 24374263 -96883267 + MT2A LTR ERVL 6 364 -237 6 770 3595 156 27 31 chr12 24374248 24374602 -96882928 - RMER17D2 LTR ERVK -110 699 359 6 770 1296 84 0 0 chr12 24374602 24374781 -96882749 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 6 770 3595 156 27 31 chr12 24374781 24375128 -96882402 - RMER17D2 LTR ERVK -451 358 2 6 770 358 310 177 0 chr12 24375135 24375248 -96882282 + RSINE1 SINE B4 4 136 -29 6 770 1159 75 0 0 chr12 24375292 24375439 -96882091 + B1_Mm SINE Alu 1 147 0 6 770 416 353 77 0 chr12 24375467 24375674 -96881856 + L1MD LINE L1 5597 5819 -540 6 770 1050 109 0 0 chr12 24375820 24375958 -96881572 - B1_Mus1 SINE Alu -10 138 1 6 770 186 43 0 0 chr12 24375981 24376004 -96881526 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 770 706 267 23 60 chr12 24376009 24376224 -96881306 - ID_B1 SINE B4 -15 209 3 6 770 4752 58 3 2 chr12 24376651 24377237 -96880293 - LTRIS_Mus LTR ERV1 0 587 1 6 770 441 66 0 0 chr12 24379157 24379218 -96878312 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 770 294 162 0 0 chr12 24379218 24379292 -96878238 + GA-rich Low_complexity Low_complexity 2 75 0 6 771 953 113 18 6 chr12 24379449 24379618 -96877912 + (TC)n Simple_repeat Simple_repeat 2 172 0 6 771 369 239 157 33 chr12 24379624 24379745 -96877785 - B1_Mur2 SINE Alu -13 136 1 6 771 777 218 90 0 chr12 24379771 24379959 -96877571 - B3 SINE B2 -9 207 3 6 771 303 250 138 125 chr12 24380220 24380380 -96877150 - MLT1F2 LTR MaLR -255 293 132 6 771 554 63 0 12 chr12 24380440 24380520 -96877010 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 6 771 727 171 39 0 chr12 24380520 24380649 -96876881 - B1_Mus1 SINE Alu -12 136 3 6 771 855 98 6 30 chr12 24380990 24381158 -96876372 + (TCCCC)n Simple_repeat Simple_repeat 2 165 0 6 771 332 309 41 53 chr12 24381984 24382155 -96875375 + CYRA11_Mm Unknown Y-chromosome 151 319 -298 6 771 861 191 164 0 chr12 24382016 24382205 -96875325 - URR1A DNA MER1_type -6 220 1 6 771 786 243 124 46 chr12 24382205 24382506 -96875024 + MTE2b LTR MaLR 35 359 0 6 771 3535 60 36 25 chr12 24382607 24383084 -96874446 + RLTR45 LTR ERVK 1 482 0 6 771 4342 80 107 16 chr12 24383084 24383718 -96873812 + RLTR45-int LTR ERVK 1 692 -6552 6 771 1151 51 0 0 chr12 24384007 24384145 -96873385 + RLTR45-int LTR ERVK 681 818 -6426 6 771 11545 55 28 15 chr12 24384944 24387323 -96870207 + RLTR45-int LTR ERVK 1322 3986 -3258 6 771 8337 44 3 5 chr12 24387316 24388326 -96869204 + RLTR45-int LTR ERVK 5065 6072 -1172 6 771 9741 38 4 0 chr12 24388348 24389556 -96867974 + RLTR45-int LTR ERVK 6072 7244 0 6 771 3648 60 36 2 chr12 24389556 24390022 -96867508 + RLTR45 LTR ERVK 1 482 0 6 771 266 271 3 29 chr12 24390425 24390525 -96867005 + MT2A LTR ERVL 9 105 -496 6 771 259 344 91 19 chr12 24390766 24390920 -96866610 + RMER15 LTR ERVL 405 569 -6 6 771 894 159 172 16 chr12 24391574 24391766 -96865764 + URR1B DNA MER1_type 4 225 0 6 771 715 303 43 32 chr12 24392053 24392333 -96865197 - B4A SINE B4 -8 284 2 6 771 328 326 101 58 chr12 24392347 24392604 -96864926 - L1MD2 LINE L1 -7 6352 6085 6 771 335 325 8 41 chr12 24393521 24393643 -96863887 + MIRb SINE MIR 2 119 -149 6 771 275 321 37 9 chr12 24393650 24393757 -96863773 - PB1D7 SINE Alu -6 114 5 6 771 212 360 123 5 chr12 24393937 24394149 -96863381 - L2c LINE L2 -223 3164 2928 6 771 633 230 16 42 chr12 24394452 24394643 -96862887 - B3 SINE B2 0 195 15 6 771 476 231 65 16 chr12 24394674 24394797 -96862733 - B1F1 SINE Alu 0 149 21 6 771 439 188 0 0 chr12 24394802 24394871 -96862659 - RSINE1 SINE B4 -38 127 59 6 771 389 244 0 0 chr12 24394881 24394967 -96862563 - PB1D10 SINE Alu 0 117 32 6 771 665 66 0 52 chr12 24395042 24395126 -96862404 + B2_Mm2 SINE B2 3 86 -109 6 771 789 11 0 0 chr12 24395126 24395216 -96862314 + (GA)n Simple_repeat Simple_repeat 2 91 0 6 771 665 66 0 52 chr12 24395216 24395227 -96862303 + B2_Mm2 SINE B2 87 93 -102 6 771 285 167 0 0 chr12 24396639 24396693 -96860837 + CT-rich Low_complexity Low_complexity 4 57 0 6 771 685 207 56 21 chr12 24396697 24396840 -96860690 - B1_Mur3 SINE Alu 0 149 2 6 771 2044 129 10 10 chr12 24396843 24397157 -96860373 + MTC LTR MaLR 108 421 0 6 771 232 294 80 27 chr12 24397162 24397274 -96860256 - MIRb SINE MIR -128 140 23 6 771 221 163 0 23 chr12 24397389 24397433 -96860097 + C-rich Low_complexity Low_complexity 5 47 0 6 771 694 256 0 0 chr12 24398095 24398224 -96859306 - RSINE1 SINE B4 -34 131 3 6 771 693 249 61 25 chr12 24398452 24398650 -96858880 - B4A SINE B4 -86 206 2 6 771 180 0 0 0 chr12 24398703 24398723 -96858807 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 771 1272 154 9 18 chr12 24399499 24399724 -96857806 - URR1A DNA MER1_type -3 223 1 6 771 636 221 15 8 chr12 24401220 24401352 -96856178 + ID_B1 SINE B4 88 220 -4 6 771 575 234 39 46 chr12 24401376 24401506 -96856024 + B1_Mur3 SINE Alu 4 132 -17 6 771 273 29 0 0 chr12 24401517 24401551 -96855979 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 771 574 240 57 19 chr12 24401784 24401941 -96855589 - ID_B1 SINE B4 -2 222 60 6 771 785 61 0 0 chr12 24401945 24402043 -96855487 + B1_Mus2 SINE Alu 41 138 -9 6 771 758 240 42 37 chr12 24402124 24402329 -96855201 - B3 SINE B2 -2 214 1 6 771 375 229 65 28 chr12 24402473 24402581 -96854949 + PB1D9 SINE Alu 9 120 0 6 771 997 131 15 15 chr12 24403304 24403583 -96853947 + GA-rich Low_complexity Low_complexity 1 279 0 6 771 502 114 31 31 chr12 24403583 24403609 -96853921 + polypurine Low_complexity Low_complexity 101 126 0 6 771 204 167 0 0 chr12 24405314 24405362 -96852168 + CT-rich Low_complexity Low_complexity 1 48 0 6 771 1099 175 32 5 chr12 24405576 24405794 -96851736 + URR1B DNA MER1_type 1 224 -1 6 771 359 242 69 23 chr12 24405844 24405975 -96851555 + MER33 DNA MER1_type 188 324 0 6 771 25 0 0 0 chr12 24406421 24406446 -96851084 + AT_rich Low_complexity Low_complexity 1 25 0 6 771 354 257 27 0 chr12 24406451 24406525 -96851005 + RSINE1 SINE B4 1 76 -89 6 771 941 213 131 41 chr12 24406577 24406902 -96850628 + MT2A LTR ERVL 92 544 -57 6 771 255 253 0 164 chr12 24406829 24406933 -96850597 + RMER21B LTR ERV1 471 557 -285 6 771 4288 146 63 8 chr12 24407002 24407163 -96850367 - RMER17D2 LTR ERVK 0 809 643 6 771 267 31 0 0 chr12 24407163 24407195 -96850335 + (TGG)n Simple_repeat Simple_repeat 2 33 0 6 771 4288 146 63 8 chr12 24407195 24407467 -96850063 - RMER17D2 LTR ERVK -167 642 368 6 771 816 55 24 8 chr12 24407467 24407594 -96849936 + (GGAGA)n Simple_repeat Simple_repeat 3 131 0 6 771 4288 146 63 8 chr12 24407594 24407926 -96849604 - RMER17D2 LTR ERVK -442 367 2 6 771 369 274 177 0 chr12 24407933 24408046 -96849484 + RSINE1 SINE B4 4 136 -29 6 771 475 340 51 9 chr12 24408096 24408310 -96849220 + L1MD LINE L1 5597 5819 -540 6 771 645 14 0 0 chr12 24408362 24408436 -96849094 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 771 1063 101 0 0 chr12 24408513 24408651 -96848879 - B1_Mus1 SINE Alu -10 138 1 6 771 243 0 0 0 chr12 24408674 24408701 -96848829 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 771 721 267 14 47 chr12 24408709 24408921 -96848609 - ID_B1 SINE B4 -18 206 2 6 771 722 43 11 0 chr12 24410867 24410961 -96846569 + (TCTCCC)n Simple_repeat Simple_repeat 3 97 0 6 771 504 197 157 33 chr12 24410968 24411089 -96846441 - B1_Mur2 SINE Alu -13 136 1 6 771 753 239 88 5 chr12 24411112 24411305 -96846225 - B3 SINE B2 -5 211 3 6 771 322 273 111 99 chr12 24411555 24411726 -96845804 - MLT1F1 LTR MaLR -256 313 141 7 771 857 65 7 21 chr12 24411779 24411920 -96845610 + (TTTA)n Simple_repeat Simple_repeat 2 140 0 7 771 731 172 47 0 chr12 24411920 24412048 -96845482 - B1_Mus1 SINE Alu -12 136 3 7 771 425 133 0 13 chr12 24412380 24412456 -96845074 + (TCCCC)n Simple_repeat Simple_repeat 2 76 0 7 771 185 313 42 42 chr12 24412908 24413028 -96844502 + L2c LINE L2 3023 3142 -245 7 771 300 116 0 0 chr12 24413029 24413072 -96844458 + URR1B DNA MER1_type 183 225 0 6 771 788 291 43 32 chr12 24413364 24413644 -96843886 - B4A SINE B4 -8 284 2 7 771 234 328 54 69 chr12 24413713 24413822 -96843708 - L1MD2 LINE L1 -76 6283 6174 7 771 479 17 17 0 chr12 24413822 24413882 -96843648 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 771 234 328 54 69 chr12 24413882 24413975 -96843555 - L1MD2 LINE L1 -186 6173 6085 7 771 319 333 8 41 chr12 24415070 24415192 -96842338 + MIRb SINE MIR 2 119 -149 7 771 335 303 28 0 chr12 24415199 24415308 -96842222 - PB1D7 SINE Alu -6 114 3 7 771 265 323 101 12 chr12 24415495 24415664 -96841866 - L2c LINE L2 -223 3164 2981 7 771 769 224 30 18 chr12 24415692 24415856 -96841674 + B3A SINE B2 3 168 -30 7 771 619 236 16 42 chr12 24416421 24416612 -96840918 - B3 SINE B2 0 195 15 7 771 429 278 29 22 chr12 24416643 24416779 -96840751 - B1F1 SINE Alu 0 149 13 7 771 439 212 12 0 chr12 24416764 24416844 -96840686 - RSINE1 SINE B4 -32 133 53 7 771 349 296 0 0 chr12 24416849 24416937 -96840593 - PB1D10 SINE Alu 0 117 30 7 771 673 60 0 0 chr12 24417010 24417094 -96840436 + B2_Mm2 SINE B2 3 86 -109 7 771 1119 81 0 0 chr12 24417094 24417267 -96840263 + (GA)n Simple_repeat Simple_repeat 2 174 0 7 771 312 188 0 0 chr12 24418559 24418628 -96838902 + CT-rich Low_complexity Low_complexity 4 72 0 7 771 641 164 85 50 chr12 24418632 24418773 -96838757 - B1_Mur3 SINE Alu 0 149 4 7 771 1915 140 23 10 chr12 24418778 24419088 -96838442 + MTC LTR MaLR 108 421 0 7 771 226 304 78 26 chr12 24419090 24419205 -96838325 - MIRb SINE MIR -125 143 23 7 771 215 273 0 0 chr12 24419311 24419366 -96838164 + C-rich Low_complexity Low_complexity 3 57 0 7 771 757 225 0 0 chr12 24420041 24420170 -96837360 - RSINE1 SINE B4 -34 131 3 7 771 741 232 55 30 chr12 24420398 24420598 -96836932 - B4A SINE B4 -86 206 2 7 771 342 0 0 0 chr12 24420649 24420687 -96836843 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 7 771 722 205 15 11 chr12 24422639 24422780 -96834750 + ID_B1 SINE B4 85 222 -70 7 771 615 187 47 31 chr12 24422810 24422937 -96834593 + B1_Mur3 SINE Alu 9 137 -12 7 771 270 106 0 0 chr12 24422947 24422994 -96834536 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 771 203 32 65 0 chr12 24423001 24423032 -96834498 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 7 771 552 220 68 8 chr12 24423242 24423375 -96834155 - ID_B1 SINE B4 -2 222 82 7 771 202 109 21 42 chr12 24423393 24423441 -96834089 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 771 959 64 8 0 chr12 24423443 24423568 -96833962 - B1_Mm SINE Alu 0 147 22 7 771 594 233 45 26 chr12 24423641 24423795 -96833735 - B3 SINE B2 -2 214 58 7 771 212 351 49 86 chr12 24423906 24424068 -96833462 + ID_B1 SINE B4 17 172 -52 7 771 399 261 0 35 chr12 24423983 24424085 -96833445 + PB1D9 SINE Alu 10 110 -10 7 771 233 29 29 0 chr12 24424085 24424119 -96833411 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 771 399 261 0 35 chr12 24424119 24424131 -96833399 + PB1D9 SINE Alu 111 120 0 7 771 1184 53 25 0 chr12 24424832 24425126 -96832404 + (GGAA)n Simple_repeat Simple_repeat 1 301 0 7 771 317 119 0 33 chr12 24425126 24425187 -96832343 + GA-rich Low_complexity Low_complexity 3 61 0 7 771 384 22 0 0 chr12 24426153 24426198 -96831332 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 771 294 159 0 0 chr12 24428534 24428603 -96828927 + CT-rich Low_complexity Low_complexity 1 69 0 7 771 9181 30 0 0 chr12 24428788 24430561 -96826969 - L1Md_T LINE L1 0 6582 4810 7 771 1087 188 27 5 chr12 24430616 24430835 -96826695 + URR1B DNA MER1_type 1 224 -1 7 771 350 273 62 15 chr12 24430886 24431016 -96826514 + MER33 DNA MER1_type 189 324 0 7 771 339 261 0 0 chr12 24431450 24431515 -96826015 + RSINE1 SINE B4 1 65 -100 7 771 928 222 118 26 chr12 24431576 24431909 -96825621 + MT2A LTR ERVL 92 553 -48 7 771 4270 147 53 32 chr12 24432000 24432459 -96825071 - RMER17D2 LTR ERVK 0 809 367 7 771 1119 38 19 6 chr12 24432459 24432616 -96824914 + (GGAGA)n Simple_repeat Simple_repeat 3 161 0 7 771 4270 147 53 32 chr12 24432616 24432948 -96824582 - RMER17D2 LTR ERVK -443 366 1 7 771 380 267 191 0 chr12 24432955 24433060 -96824470 + RSINE1 SINE B4 4 128 -37 7 771 503 343 47 9 chr12 24433117 24433332 -96824198 + L1MD LINE L1 5597 5819 -540 7 771 758 11 11 0 chr12 24433375 24433466 -96824064 + (GA)n Simple_repeat Simple_repeat 2 93 0 7 771 1023 109 0 0 chr12 24433543 24433681 -96823849 - B1_Mus1 SINE Alu -10 138 1 7 771 279 0 0 0 chr12 24433704 24433735 -96823795 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 771 754 262 14 47 chr12 24433743 24433955 -96823575 - ID_B1 SINE B4 -18 206 2 7 771 1116 23 0 0 chr12 24436036 24436167 -96821363 + (TCTCCC)n Simple_repeat Simple_repeat 3 133 0 7 771 504 197 157 33 chr12 24436174 24436295 -96821235 - B1_Mur2 SINE Alu -13 136 1 7 771 704 213 141 5 chr12 24436322 24436506 -96821024 - B3 SINE B2 -5 211 3 7 771 279 254 136 123 chr12 24436766 24436928 -96820602 - MLT1F2 LTR MaLR -265 304 141 7 771 611 126 8 23 chr12 24436981 24437111 -96820419 + (TTTA)n Simple_repeat Simple_repeat 1 128 0 7 771 815 179 36 0 chr12 24437111 24437251 -96820279 - B1_Mus1 SINE Alu -1 147 3 7 771 413 133 0 13 chr12 24437590 24437666 -96819864 + (TCCCC)n Simple_repeat Simple_repeat 2 76 0 7 771 749 295 43 32 chr12 24438453 24438733 -96818797 - B4A SINE B4 -8 284 2 7 771 329 326 92 58 chr12 24438746 24438912 -96818618 - L1MD2 LINE L1 -7 6352 6171 7 771 599 0 14 0 chr12 24438912 24438983 -96818547 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 771 329 326 92 58 chr12 24438983 24439076 -96818454 - L1MD2 LINE L1 -189 6170 6085 7 771 242 291 21 69 chr12 24439156 24439344 -96818186 + (TCCTG)n Simple_repeat Simple_repeat 2 180 0 7 771 1078 74 29 0 chr12 24439927 24440102 -96817428 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7 771 981 33 0 0 chr12 24441098 24441219 -96816311 + (CA)n Simple_repeat Simple_repeat 2 122 0 7 771 204 222 0 0 chr12 24443522 24443594 -96813936 + CT-rich Low_complexity Low_complexity 1 72 0 7 771 1054 181 32 5 chr12 24443807 24444023 -96813507 + URR1B DNA MER1_type 1 222 -3 7 771 282 288 53 8 chr12 24444073 24444206 -96813324 + MER33 DNA MER1_type 186 324 0 7 771 507 261 43 25 chr12 24444675 24444836 -96812694 + RSINE1 SINE B4 1 164 -1 7 771 1028 162 100 69 chr12 24445414 24445705 -96811825 - RLTRETN_Mm LTR ERVK 0 322 23 7 771 3248 91 4 34 chr12 24445705 24446181 -96811349 - MMETn-int LTR ERVK 0 4844 4383 7 771 1020 109 17 0 chr12 24446310 24446485 -96811045 + (TTCCC)n Simple_repeat Simple_repeat 1 178 0 7 771 223 233 0 0 chr12 24446491 24446534 -96810996 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 771 2350 87 0 58 chr12 24446545 24446888 -96810642 - ORR1A2 LTR MaLR -4 323 1 7 771 927 146 0 0 chr12 24447019 24447156 -96810374 - B1_Mur4 SINE Alu -13 137 1 7 771 386 308 65 16 chr12 24447177 24447362 -96810168 - B3A SINE B2 -3 195 2 7 771 574 284 14 72 chr12 24447379 24447588 -96809942 - B4A SINE B4 -72 220 24 7 771 758 278 15 20 chr12 24448481 24448708 -96808822 - ID_B1 SINE B4 -65 227 3 7 771 930 173 0 0 chr12 24448755 24448905 -96808625 - B1_Mur4 SINE Alu 0 150 1 7 771 276 259 136 0 chr12 24448907 24448988 -96808542 - PB1D10 SINE Alu -14 103 12 7 771 252 294 0 23 chr12 24452444 24452504 -96805026 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 771 531 0 0 0 chr12 24452504 24452563 -96804967 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 771 252 294 0 23 chr12 24452563 24452589 -96804941 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 771 238 265 115 18 chr12 24453193 24453315 -96804215 - MIR SINE MIR -60 208 67 7 771 681 262 24 0 chr12 24453777 24453941 -96803589 - B3A SINE B2 -30 168 1 7 771 2078 133 41 0 chr12 24453949 24454288 -96803242 - L1_Mus3 LINE L1 -7 6631 6279 7 771 384 190 265 8 chr12 24454298 24454415 -96803115 - L1MC1 LINE L1 0 6333 6187 7 771 231 250 179 8 chr12 24454442 24454559 -96802971 - L1MC1 LINE L1 -196 6148 6012 7 771 2906 49 0 6 chr12 24454584 24454931 -96802599 + IAPLTR4 LTR ERVK 1 345 0 7 771 742 136 22 22 chr12 24454931 24455066 -96802464 + IAPLTR3-int LTR ERVK 1 135 -6686 7 771 886 196 45 45 chr12 24455065 24455311 -96802219 + IAPLTR3-int LTR ERVK 821 1066 -5755 7 771 765 134 141 100 chr12 24455413 24455704 -96801826 + ETnERV2-int LTR ERVK 2175 2307 -4937 7 771 475 212 88 0 chr12 24455828 24455941 -96801589 + RLTR19-int LTR ERVK 938 1060 -5077 7 771 573 257 372 29 chr12 24455954 24456177 -96801353 + ETnERV2-int LTR ERVK 2454 2753 -4653 7 771 3262 151 154 2 chr12 24456203 24456813 -96800717 + ETnERV2-int LTR ERVK 3567 4269 -3137 7 771 492 185 12 35 chr12 24456820 24456945 -96800585 + MMETn-int LTR ERVK 2357 2464 -2380 7 771 837 81 35 56 chr12 24456957 24457101 -96800429 + MMERVK10C-int LTR ERVK 4530 4670 -2911 7 771 3520 72 0 16 chr12 24457355 24457805 -96799725 + MMERVK10C-int LTR ERVK 5203 5645 -1936 7 771 3442 90 0 4 chr12 24457793 24458249 -96799281 + MMERVK10C-int LTR ERVK 5761 6214 -1367 7 771 4381 211 15 14 chr12 24458232 24459106 -96798424 + IAPLTR3-int LTR ERVK 5927 6801 -20 7 771 2813 59 0 6 chr12 24459106 24459449 -96798081 + IAPLTR4 LTR ERVK 1 341 -4 7 771 278 157 48 0 chr12 24459918 24460001 -96797529 + (TG)n Simple_repeat Simple_repeat 1 87 0 7 771 460 209 29 0 chr12 24460015 24460187 -96797343 + (TG)n Simple_repeat Simple_repeat 1 177 0 7 771 406 185 22 15 chr12 24460207 24460344 -96797186 + (TG)n Simple_repeat Simple_repeat 1 138 0 7 771 225 94 0 0 chr12 24460571 24460603 -96796927 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7 771 387 265 33 0 chr12 24460634 24460785 -96796745 + (TATAA)n Simple_repeat Simple_repeat 2 157 0 7 771 518 305 42 108 chr12 24460786 24460908 -96796622 - RLTR11A2 LTR ERVK -82 445 347 7 771 1213 55 0 0 chr12 24460908 24461054 -96796476 - B1_Mm SINE Alu 0 147 2 7 771 518 305 42 108 chr12 24461054 24461265 -96796265 - RLTR11A2 LTR ERVK -181 346 134 7 771 513 168 11 11 chr12 24461448 24461623 -96795907 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 7 771 194 105 26 0 chr12 24461677 24461715 -96795815 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 7 771 653 210 52 8 chr12 24461788 24461957 -96795573 + Lx2B LINE L1 6625 6800 -176 8 771 30 45 0 0 chr12 24461973 24462017 -96795513 + AT_rich Low_complexity Low_complexity 1 44 0 8 771 237 65 0 0 chr12 24462019 24462050 -96795480 + (TA)n Simple_repeat Simple_repeat 1 31 0 8 771 339 25 0 0 chr12 24462050 24462089 -96795441 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 771 2142 248 62 26 chr12 24462653 24463737 -96793793 + L1_Mur2 LINE L1 1002 2082 -3798 8 771 869 146 28 0 chr12 24463954 24464098 -96793432 - B1_Mur4 SINE Alu -1 149 2 8 771 252 295 0 0 chr12 24464395 24464473 -96793057 - ORR1C2 LTR MaLR -14 370 293 8 771 379 306 68 47 chr12 24464678 24465061 -96792469 - MurSatRep1 Unknown Unknown 0 2137 1831 8 771 2927 92 0 15 chr12 24465078 24465488 -96792042 - L1_Mus1 LINE L1 -1 6566 6163 8 771 497 308 72 44 chr12 24465533 24466137 -96791393 - MurSatRep1 Unknown Unknown 0 2137 1691 8 771 449 280 11 11 chr12 24466126 24466349 -96791181 - MMSAT4 Satellite Satellite 0 223 1 8 771 583 316 47 29 chr12 24466292 24466676 -96790854 - MurSatRep1 Unknown Unknown 0 2137 1747 8 771 408 302 0 0 chr12 24466630 24466769 -96790761 - MMSAT4 Satellite Satellite 0 168 30 8 771 617 308 47 31 chr12 24466709 24467165 -96790365 - MurSatRep1 Unknown Unknown -88 2049 1691 8 771 440 286 26 26 chr12 24466966 24467189 -96790341 - MMSAT4 Satellite Satellite 0 223 1 8 771 7951 194 37 33 chr12 24467302 24468302 -96789228 - MurSatRep1 Unknown Unknown -2 2135 1127 8 771 1357 93 6 0 chr12 24468302 24468485 -96789045 + B2_Mm1a SINE B2 2 185 -8 8 771 7951 194 37 33 chr12 24468485 24469329 -96788201 - MurSatRep1 Unknown Unknown -1011 1126 284 8 771 373 298 65 0 chr12 24469329 24469453 -96788077 + B1_Mur2 SINE Alu 1 132 -17 8 771 598 197 49 0 chr12 24469455 24469597 -96787933 - MurSatRep1 Unknown Unknown -1987 150 2 8 771 226 343 77 48 chr12 24469688 24469896 -96787634 + B3 SINE B2 3 216 0 8 771 192 179 0 0 chr12 24470139 24470178 -96787352 + A-rich Low_complexity Low_complexity 1 39 0 8 771 1185 327 35 60 chr12 24470238 24470956 -96786574 - ORR1D-int LTR MaLR -108 1262 563 8 771 5952 236 16 7 chr12 24470971 24472373 -96785157 + Lx4B LINE L1 5640 7054 -4 8 771 960 103 0 27 chr12 24472383 24472532 -96784998 + B1_Mus2 SINE Alu 3 147 0 8 771 306 344 58 26 chr12 24472683 24472838 -96784692 - ORR1D-int LTR MaLR -1289 291 132 8 771 487 246 23 6 chr12 24473993 24474169 -96783361 + L1_Mur3 LINE L1 904 1082 -6646 8 771 457 258 97 9 chr12 24474496 24474723 -96782807 + L1_Mur3 LINE L1 1314 1560 -4317 8 771 464 271 10 87 chr12 24474739 24474945 -96782585 + L1_Mur3 LINE L1 1647 1836 -4044 8 771 4745 132 53 23 chr12 24475506 24475863 -96781667 + RMER17D LTR ERVK 1 364 -525 8 771 468 0 0 0 chr12 24475863 24475915 -96781615 + (TCTCC)n Simple_repeat Simple_repeat 2 53 0 8 771 4745 132 53 23 chr12 24475915 24476418 -96781112 + RMER17D LTR ERVK 365 887 -2 8 771 348 304 51 81 chr12 24476999 24477235 -96780295 - MT2A LTR ERVL -231 302 74 8 771 276 184 66 44 chr12 24477274 24477365 -96780165 + (TTAGGG)n Simple_repeat Simple_repeat 2 94 0 8 771 242 262 121 16 chr12 24477413 24477537 -96779993 - Lx8 LINE L1 -2 7471 7335 8 771 272 188 16 0 chr12 24477556 24477620 -96779910 + CT-rich Low_complexity Low_complexity 3 67 0 8 771 248 273 202 8 chr12 24477689 24477818 -96779712 - Lx8 LINE L1 -342 7131 6978 8 771 712 260 66 24 chr12 24478130 24478343 -96779187 + ID_B1 SINE B4 1 222 -2 8 771 884 178 173 0 chr12 24478669 24478894 -96778636 - Lx9 LINE L1 0 7644 7381 8 771 987 116 0 0 chr12 24478946 24479084 -96778446 + B1_Mm SINE Alu 1 138 -9 8 771 194 0 39 0 chr12 24479114 24479140 -96778390 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 771 342 292 94 20 chr12 24479418 24479597 -96777933 + B3A SINE B2 3 191 -4 8 771 198 262 11 56 chr12 24479995 24480084 -96777446 + MER5B DNA MER1_type 32 116 -62 8 771 250 337 31 0 chr12 24480158 24480256 -96777274 - MER5A1 DNA MER1_type 0 166 66 8 771 229 386 15 30 chr12 24480321 24480452 -96777078 + MER3 DNA MER1_type 3 131 -78 8 771 251 250 10 40 chr12 24482091 24482191 -96775339 + B4A SINE B4 1 97 -195 8 771 243 61 0 0 chr12 24482252 24482285 -96775245 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 771 1555 52 5 10 chr12 24482838 24483032 -96774498 + B2_Mm1a SINE B2 1 193 0 8 771 21 0 0 0 chr12 24485842 24485863 -96771667 + GC_rich Low_complexity Low_complexity 1 21 0 8 771 2738 42 2 161 chr12 24486251 24486710 -96770820 + RLTR10 LTR ERVK 1 386 -4 8 771 8063 37 11 2 chr12 24486727 24487677 -96769853 + RLTR10-int LTR ERVK 41 998 -989 8 771 345 248 62 39 chr12 24487741 24487871 -96769659 + RLTR10-int LTR ERVK 1462 1594 -5987 8 771 8924 22 0 0 chr12 24487953 24488948 -96768582 + RLTR10-int LTR ERVK 990 1984 -3 8 771 2784 36 2 161 chr12 24488950 24489410 -96768120 + RLTR10 LTR ERVK 1 387 -3 8 771 1771 20 5 0 chr12 24489425 24489629 -96767901 + RLTR10-int LTR ERVK 41 245 -1742 8 771 500 121 24 0 chr12 24489631 24489714 -96767816 - RLTR10 LTR ERVK -305 85 1 8 771 1644 37 0 0 chr12 24490551 24490738 -96766792 + B2_Mm1a SINE B2 2 188 -5 8 771 922 136 0 10 chr12 24491123 24491429 -96766101 + (CA)n Simple_repeat Simple_repeat 1 302 0 8 771 353 247 12 0 chr12 24491485 24491566 -96765964 - ID2 SINE ID 0 83 2 8 771 758 197 0 14 chr12 24491686 24491830 -96765700 + B1_Mur3 SINE Alu 2 143 -6 8 771 384 349 38 13 chr12 24491847 24492082 -96765448 + MER46C DNA MER2_type 91 331 -7 8 771 1462 218 103 11 chr12 24492314 24492694 -96764836 + MTD LTR MaLR 5 419 0 8 771 1133 82 0 20 chr12 24493110 24493259 -96764271 - B1_Mus2 SINE Alu 0 147 2 8 771 536 223 9 0 chr12 24493309 24493421 -96764109 + PB1D9 SINE Alu 2 114 -6 8 771 383 186 10 148 chr12 24494318 24494384 -96763146 - B3 SINE B2 -64 152 90 8 771 885 119 27 20 chr12 24494384 24494530 -96763000 - B1_Mus1 SINE Alu 0 148 2 8 771 383 186 10 148 chr12 24494530 24494564 -96762966 - B3 SINE B2 -127 89 66 8 771 288 277 0 0 chr12 24494623 24494688 -96762842 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 771 619 194 71 14 chr12 24494705 24494846 -96762684 - B3 SINE B2 -12 204 56 8 771 673 194 29 7 chr12 24495043 24495183 -96762347 - B1_Mur1 SINE Alu -6 143 1 8 771 821 309 119 15 chr12 24495449 24495860 -96761670 + MER63C DNA AcHobo 240 693 -237 8 771 509 286 33 11 chr12 24495931 24496114 -96761416 + MER63C DNA AcHobo 691 877 -53 8 771 2168 68 29 3 chr12 24496114 24496425 -96761105 + IAPLTR2b LTR ERVK 1 319 -8 8 771 334 259 8 114 chr12 24496845 24496976 -96760554 + PB1D10 SINE Alu 1 117 0 8 771 1984 96 31 25 chr12 24497319 24497639 -96759891 + RLTRETN_Mm LTR ERVK 1 322 0 8 771 1253 81 9 0 chr12 24497932 24498155 -96759375 + (TTTC)n Simple_repeat Simple_repeat 1 224 0 8 771 1162 62 7 0 chr12 24498157 24498301 -96759229 - B1_Mm SINE Alu 0 147 3 8 771 540 159 37 0 chr12 24498842 24498949 -96758581 + Lx3B LINE L1 6862 6972 -1 8 771 504 0 0 0 chr12 24499193 24499249 -96758281 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 8 771 792 90 194 0 chr12 24499249 24499383 -96758147 - B2_Mm1a SINE B2 -33 160 1 8 771 245 194 153 0 chr12 24499878 24499950 -96757580 + MER5A1 DNA MER1_type 13 95 -71 8 771 590 247 50 128 chr12 24500181 24500399 -96757131 - ID_B1 SINE B4 -22 202 2 1 771 342 0 0 0 chr12 24500446 24500484 -96757046 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 771 291 116 0 0 chr12 24501025 24501068 -96756462 - MTC LTR MaLR -287 134 92 3 771 358 102 0 0 chr12 24501287 24501336 -96756194 - MTD LTR MaLR 0 421 373 4 771 749 186 7 54 chr12 24501336 24501484 -96756046 + B1_Mus1 SINE Alu 8 148 0 5 771 1420 210 107 27 chr12 24501503 24501840 -96755690 - MTD LTR MaLR -40 379 16 4 771 631 24 24 0 chr12 24501982 24502067 -96755463 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 6 771 580 265 0 13 chr12 24502247 24502396 -96755134 + B1_Mm SINE Alu 1 147 0 7 771 234 128 26 0 chr12 24502634 24502673 -96754857 - MLT1C LTR MaLR -279 188 149 8 771 354 193 0 0 chr12 24502831 24502888 -96754642 - B3 SINE B2 -87 129 73 9 771 406 89 0 0 chr12 24503144 24503200 -96754330 - RMER6D LTR ERVK -664 56 1 1 771 486 328 69 0 chr12 24503573 24503704 -96753826 + RSINE1 SINE B4 22 161 -4 1 771 2415 145 16 45 chr12 24504733 24505160 -96752370 + MTC LTR MaLR 1 415 -6 1 771 1376 104 0 5 chr12 24505789 24505982 -96751548 - B2_Mm2 SINE B2 -3 192 1 1 771 332 284 82 31 chr12 24506052 24506150 -96751380 - RSINE1 SINE B4 -13 152 50 1 771 1021 150 0 0 chr12 24506237 24506384 -96751146 + B1_Mur1 SINE Alu 3 149 0 1 771 370 262 112 77 chr12 24506619 24506934 -96750596 + ORR1E LTR MaLR 1 359 0 1 771 200 360 44 11 chr12 24506944 24507034 -96750496 + L2c LINE L2 3256 3348 -39 1 771 567 0 0 0 chr12 24507074 24507137 -96750393 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 771 228 316 13 13 chr12 24507346 24507423 -96750107 - ID2 SINE ID -5 78 2 1 771 219 146 0 0 chr12 24507914 24507955 -96749575 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2 771 21 57 0 0 chr12 24507986 24508021 -96749509 + AT_rich Low_complexity Low_complexity 1 35 0 2 771 1257 87 16 0 chr12 24508116 24508301 -96749229 - B2_Mm2 SINE B2 -2 193 6 2 771 557 252 17 0 chr12 24508305 24508424 -96749106 - RSINE1 SINE B4 -42 123 3 2 771 590 188 10 10 chr12 24508631 24508733 -96748797 - B1_Mur2 SINE Alu -40 109 8 2 771 399 264 121 97 chr12 24508741 24508961 -96748569 - B3A SINE B2 0 216 8 2 771 497 256 89 51 chr12 24509614 24509828 -96747702 + ID_B1 SINE B4 3 224 0 2 772 1575 250 69 3 chr12 24510877 24511266 -96746264 - MTD LTR MaLR -3 416 2 2 772 258 345 35 0 chr12 24511266 24511382 -96746148 + RMER15 LTR ERVL 440 559 -16 2 772 1456 276 11 32 chr12 24511555 24511895 -96745635 - ORR1D2 LTR MaLR -4 366 28 2 772 1160 153 76 9 chr12 24511895 24512106 -96745424 + URR1B DNA MER1_type 1 225 0 3 772 1456 276 11 32 chr12 24512106 24512139 -96745391 - ORR1D2 LTR MaLR -343 27 1 2 772 225 315 0 61 chr12 24514375 24514473 -96743057 - MLT1K LTR MaLR 0 595 504 3 772 1062 196 29 0 chr12 24515419 24515628 -96741902 + B3 SINE B2 2 216 0 3 772 715 148 208 99 chr12 24515666 24515868 -96741662 - URR1B DNA MER1_type 0 225 2 3 772 1161 68 0 39 chr12 24516677 24516831 -96740699 + B1_Mus1 SINE Alu 1 148 0 3 772 273 140 0 0 chr12 24517269 24517326 -96740204 + (CCA)n Simple_repeat Simple_repeat 2 58 0 3 772 233 132 26 0 chr12 24517386 24517424 -96740106 + MTC LTR MaLR 1 39 -380 3 772 2673 68 245 44 chr12 24517536 24518010 -96739520 + RLTR6_Mm LTR ERV1 37 605 -49 3 772 68538 18 15 1 chr12 24518010 24525681 -96731849 + RLTR6-int LTR ERV1 1 7778 0 3 772 2522 65 256 46 chr12 24525791 24526244 -96731286 + RLTR6_Mm LTR ERV1 37 584 -70 3 772 1703 151 103 33 chr12 24526243 24526572 -96730958 + MTC LTR MaLR 37 388 -33 3 772 267 264 61 43 chr12 24527119 24527234 -96730296 + L2c LINE L2 3218 3334 -53 3 772 1286 207 168 6 chr12 24527587 24527908 -96729622 + ORR1D1 LTR MaLR 1 373 -1 4 772 436 288 13 40 chr12 24527935 24528087 -96729443 + B1F SINE Alu 2 149 0 4 772 353 287 0 41 chr12 24528286 24528384 -96729146 + PB1D10 SINE Alu 13 106 -11 4 772 706 101 60 200 chr12 24528838 24528971 -96728559 - URR1A DNA MER1_type 0 226 102 4 772 868 99 13 84 chr12 24528971 24529125 -96728405 - B1_Mm SINE Alu 0 147 5 4 772 706 146 77 152 chr12 24529125 24529207 -96728323 - URR1A DNA MER1_type -125 101 4 4 772 917 224 14 34 chr12 24529581 24529789 -96727741 + B3 SINE B2 2 205 -11 4 772 810 158 7 0 chr12 24530181 24530327 -96727203 - B1_Mus1 SINE Alu -1 147 1 4 772 872 201 0 0 chr12 24530374 24530518 -96727012 + B1_Mur1 SINE Alu 1 144 -5 4 772 270 324 40 0 chr12 24530533 24530607 -96726923 + ID4_ SINE ID 1 77 -6 4 772 239 350 68 0 chr12 24530607 24530636 -96726894 + ID_B1 SINE B4 1 110 -114 4 772 642 36 0 0 chr12 24530654 24530765 -96726765 + (TAGA)n Simple_repeat Simple_repeat 1 111 0 5 772 1134 115 0 0 chr12 24530767 24530941 -96726589 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 5 772 588 237 113 45 chr12 24531430 24531651 -96725879 - B4A SINE B4 -54 238 3 5 772 403 292 54 126 chr12 24531676 24531790 -96725740 + MLT1B LTR MaLR 160 253 -137 5 772 2634 81 39 10 chr12 24531790 24532179 -96725351 - MTB LTR MaLR 0 400 1 5 772 403 292 54 126 chr12 24532179 24532303 -96725227 + MLT1B LTR MaLR 254 381 -9 5 772 367 266 214 14 chr12 24532381 24532443 -96725087 - ID_B1 SINE B4 0 224 150 5 772 967 138 7 0 chr12 24532443 24532588 -96724942 + B1_Mus2 SINE Alu 1 146 -1 5 772 367 266 214 14 chr12 24532588 24532670 -96724860 - ID_B1 SINE B4 -75 149 51 5 772 934 279 13 17 chr12 24532805 24533035 -96724495 + MTEa LTR MaLR 1 229 -150 5 772 1084 183 16 0 chr12 24533416 24533602 -96723928 - RLTR1D LTR ERV1 0 605 417 5 772 3120 20 0 0 chr12 24533602 24533948 -96723582 - ORR1A0 LTR MaLR 0 346 1 5 772 7742 59 8 5 chr12 24533948 24534913 -96722617 - ORR1A0-int LTR MaLR 0 1792 825 5 772 237 228 196 56 chr12 24534913 24535020 -96722510 + RLTR6_Mm LTR ERV1 1 122 -532 6 772 2273 105 239 46 chr12 24535022 24535482 -96722048 + RLTR6_Mm LTR ERV1 37 585 -69 6 772 5198 69 22 1 chr12 24535481 24536209 -96721321 - ORR1A0-int LTR MaLR -961 831 89 6 772 588 218 199 47 chr12 24536209 24536445 -96721085 - RLTR10A LTR ERVK 0 411 140 6 772 740 77 0 0 chr12 24536486 24536590 -96720940 - ORR1A0-int LTR MaLR -1688 104 1 6 772 3059 23 6 0 chr12 24536590 24536934 -96720596 - ORR1A0 LTR MaLR 0 346 1 6 772 2240 98 9 3 chr12 24536934 24537253 -96720277 - RLTR1C LTR ERV1 -182 321 1 6 772 214 286 54 0 chr12 24537352 24537408 -96720122 + MIRm SINE MIR 97 155 -121 6 772 263 272 64 35 chr12 24537801 24537869 -96719661 - MLT1N2 LTR MaLR -5 557 494 6 772 240 35 0 0 chr12 24537869 24537898 -96719632 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 772 263 272 64 35 chr12 24537898 24537970 -96719560 - MLT1N2 LTR MaLR -69 493 413 6 772 638 243 123 67 chr12 24538943 24539147 -96718383 + RMER10A LTR ERVL 65 276 -166 6 772 1116 133 0 0 chr12 24539147 24539327 -96718203 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 772 638 243 123 67 chr12 24539327 24539480 -96718050 + RMER10A LTR ERVL 277 441 -1 6 772 399 268 139 14 chr12 24539624 24539768 -96717762 - RSINE1 SINE B4 -2 163 2 7 772 751 210 108 22 chr12 24540391 24540576 -96716954 + MTD LTR MaLR 1 201 -218 7 772 789 252 60 10 chr12 24540586 24540763 -96716767 + B3 SINE B2 1 189 -27 7 772 612 40 0 0 chr12 24540763 24540838 -96716692 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 7 772 789 252 60 10 chr12 24540838 24540860 -96716670 + B3 SINE B2 190 209 -7 7 772 894 233 38 34 chr12 24540873 24541082 -96716448 + MTD LTR MaLR 196 405 -14 7 772 809 143 6 120 chr12 24541501 24541668 -96715862 + B1_Mus1 SINE Alu 1 148 0 7 772 296 290 9 78 chr12 24541567 24541683 -96715847 + RLTR25B LTR ERVK 448 555 -473 7 772 989 123 0 7 chr12 24541758 24541905 -96715625 + B1_Mus1 SINE Alu 2 147 -1 7 772 903 19 0 0 chr12 24541910 24542015 -96715515 + (GAAAA)n Simple_repeat Simple_repeat 4 108 0 7 772 585 244 85 69 chr12 24542030 24542219 -96715311 + B3 SINE B2 2 193 -23 7 772 772 257 16 21 chr12 24542270 24542290 -96715240 - B3A SINE B2 -8 190 172 7 772 759 40 0 0 chr12 24542290 24542389 -96715141 + (TG)n Simple_repeat Simple_repeat 2 100 0 8 772 772 257 16 21 chr12 24542389 24542559 -96714971 - B3A SINE B2 -27 171 1 7 772 568 250 26 0 chr12 24542573 24542725 -96714805 + L1MD LINE L1 5417 5572 -670 8 772 586 204 273 19 chr12 24542726 24542980 -96714550 + MT2A LTR ERVL 6 364 -237 8 772 3458 159 55 25 chr12 24542965 24543319 -96714211 - RMER17D2 LTR ERVK -110 699 335 8 772 978 99 19 0 chr12 24543319 24543481 -96714049 + (GGAGA)n Simple_repeat Simple_repeat 2 166 0 8 772 3458 159 55 25 chr12 24543481 24543805 -96713725 - RMER17D2 LTR ERVK -475 334 1 8 772 358 310 177 0 chr12 24543812 24543925 -96713605 + RSINE1 SINE B4 4 136 -29 8 772 1159 75 0 0 chr12 24543969 24544116 -96713414 + B1_Mm SINE Alu 1 147 0 8 772 433 348 77 0 chr12 24544142 24544349 -96713181 + L1MD LINE L1 5597 5819 -540 8 772 1050 109 0 0 chr12 24544495 24544633 -96712897 - B1_Mus1 SINE Alu -10 138 1 8 772 186 43 0 0 chr12 24544656 24544679 -96712851 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 772 706 267 23 60 chr12 24544684 24544899 -96712631 - ID_B1 SINE B4 -15 209 3 8 772 4724 60 3 2 chr12 24545326 24545912 -96711618 - LTRIS_Mus LTR ERV1 0 587 1 9 772 531 56 0 0 chr12 24547832 24547903 -96709627 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 772 294 162 0 0 chr12 24547903 24547977 -96709553 + GA-rich Low_complexity Low_complexity 2 75 0 9 772 986 115 17 6 chr12 24548134 24548309 -96709221 + (TC)n Simple_repeat Simple_repeat 2 178 0 9 772 369 239 157 33 chr12 24548315 24548436 -96709094 - B1_Mur2 SINE Alu -13 136 1 9 772 777 218 90 0 chr12 24548462 24548650 -96708880 - B3 SINE B2 -9 207 3 9 772 303 250 138 125 chr12 24548911 24549071 -96708459 - MLT1F2 LTR MaLR -255 293 132 9 772 482 70 0 14 chr12 24549131 24549203 -96708327 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 9 772 727 171 39 0 chr12 24549203 24549332 -96708198 - B1_Mus1 SINE Alu -12 136 3 9 772 855 98 6 30 chr12 24549673 24549841 -96707689 + (TCCCC)n Simple_repeat Simple_repeat 2 165 0 9 772 332 309 41 53 chr12 24550667 24550838 -96706692 + CYRA11_Mm Unknown Y-chromosome 151 319 -298 1 772 861 191 164 0 chr12 24550699 24550888 -96706642 - URR1A DNA MER1_type -6 220 1 1 772 787 252 122 41 chr12 24550888 24551189 -96706341 + MTE2b LTR MaLR 35 359 0 1 772 3579 58 36 13 chr12 24551289 24551760 -96705770 + RLTR45 LTR ERVK 1 482 0 1 772 4342 80 107 16 chr12 24551760 24552394 -96705136 + RLTR45-int LTR ERVK 1 692 -6552 1 772 1151 51 0 0 chr12 24552683 24552821 -96704709 + RLTR45-int LTR ERVK 681 818 -6426 1 772 11522 55 28 14 chr12 24553620 24555998 -96701532 + RLTR45-int LTR ERVK 1322 3986 -3258 1 772 8392 44 3 5 chr12 24555991 24557001 -96700529 + RLTR45-int LTR ERVK 5065 6072 -1172 1 772 1927 94 13 3 chr12 24557023 24557322 -96700208 + RLTR13B1 LTR ERVK 207 508 -385 1 772 7994 34 4 0 chr12 24557322 24558230 -96699300 + RLTR45-int LTR ERVK 6333 7244 0 1 772 3601 60 36 2 chr12 24558230 24558696 -96698834 + RLTR45 LTR ERVK 1 482 0 1 772 237 250 0 29 chr12 24559099 24559169 -96698361 + MT2A LTR ERVL 9 76 -457 1 772 833 140 0 39 chr12 24560284 24560440 -96697090 + URR1A DNA MER1_type 77 226 0 1 772 652 303 43 32 chr12 24560727 24561007 -96696523 - B4A SINE B4 -8 284 2 1 772 285 316 8 42 chr12 24562198 24562317 -96695213 + MIRb SINE MIR 5 119 -149 1 772 254 321 37 9 chr12 24562324 24562431 -96695099 - PB1D7 SINE Alu -6 114 5 1 772 573 250 10 40 chr12 24563126 24563317 -96694213 - B3 SINE B2 0 193 15 1 772 422 231 65 16 chr12 24563358 24563481 -96694049 - B1F1 SINE Alu 0 149 21 1 772 377 226 24 12 chr12 24563486 24563571 -96693959 - RSINE1 SINE B4 -38 127 42 1 772 355 228 0 0 chr12 24563572 24563651 -96693879 - PB1D10 SINE Alu -7 110 32 1 772 589 83 0 0 chr12 24563733 24563817 -96693713 + B2_Mm2 SINE B2 3 86 -109 1 772 858 47 0 0 chr12 24563817 24563924 -96693606 + (GA)n Simple_repeat Simple_repeat 2 108 0 1 772 434 183 20 61 chr12 24563924 24563938 -96693592 + B3A SINE B2 89 97 -101 1 772 273 167 0 0 chr12 24565347 24565401 -96692129 + CT-rich Low_complexity Low_complexity 4 57 0 1 772 675 200 56 21 chr12 24565405 24565548 -96691982 - B1_Mur3 SINE Alu 0 149 2 1 772 312 143 0 0 chr12 24565551 24565600 -96691930 + MTC LTR MaLR 108 156 -265 1 772 273 167 0 0 chr12 24565738 24565792 -96691738 + CT-rich Low_complexity Low_complexity 4 57 0 1 772 675 200 56 21 chr12 24565796 24565939 -96691591 - B1_Mur3 SINE Alu 0 149 2 1 772 1887 132 10 10 chr12 24565942 24566256 -96691274 + MTC LTR MaLR 108 421 0 1 772 214 286 0 0 chr12 24566471 24566527 -96691003 + C-rich Low_complexity Low_complexity 1 56 0 1 772 684 295 43 32 chr12 24566781 24567061 -96690469 + B4A SINE B4 2 284 -8 1 772 289 114 0 0 chr12 24567353 24567397 -96690133 - URR1B DNA MER1_type 0 225 182 1 772 353 117 0 16 chr12 24567969 24568030 -96689500 + (GGGGA)n Simple_repeat Simple_repeat 2 61 0 1 772 699 187 43 7 chr12 24568362 24568502 -96689028 + B1_Mus1 SINE Alu 3 147 -1 1 772 593 90 9 26 chr12 24568502 24568616 -96688914 + (TAAA)n Simple_repeat Simple_repeat 1 112 0 1 772 230 328 79 32 chr12 24568672 24568798 -96688732 + MLT1F2 LTR MaLR 145 276 -284 1 772 701 239 88 5 chr12 24569091 24569284 -96688246 + B3 SINE B2 3 211 -5 1 772 461 197 157 33 chr12 24569309 24569430 -96688100 + B1_Mur2 SINE Alu 1 136 -13 1 772 1620 0 0 0 chr12 24569440 24569645 -96687885 + (GGGAGA)n Simple_repeat Simple_repeat 1 205 0 1 772 723 277 13 43 chr12 24571735 24571965 -96685565 + ID_B1 SINE B4 2 224 0 1 772 997 109 0 0 chr12 24571997 24572135 -96685395 + B1_Mus1 SINE Alu 1 138 -10 1 772 1089 23 0 0 chr12 24572212 24572340 -96685190 + (TC)n Simple_repeat Simple_repeat 2 129 0 1 772 487 347 47 9 chr12 24572392 24572607 -96684923 - L1MD LINE L1 -540 5819 5597 1 772 338 301 177 0 chr12 24572657 24572770 -96684760 - RSINE1 SINE B4 -29 136 4 1 772 4143 146 63 8 chr12 24572777 24573109 -96684421 + RMER17D2 LTR ERVK 1 366 -443 1 772 802 19 0 19 chr12 24573109 24573215 -96684315 + (TCTCC)n Simple_repeat Simple_repeat 3 106 0 1 772 4143 146 63 8 chr12 24573215 24573487 -96684043 + RMER17D2 LTR ERVK 367 641 -168 1 772 186 43 0 0 chr12 24573487 24573510 -96684020 + (CCA)n Simple_repeat Simple_repeat 2 24 0 1 772 4143 146 63 8 chr12 24573510 24573671 -96683859 + RMER17D2 LTR ERVK 642 808 -1 1 772 788 230 119 26 chr12 24573769 24574095 -96683435 - MT2A LTR ERVL -55 546 92 1 772 293 277 0 0 chr12 24574156 24574221 -96683309 - RSINE1 SINE B4 -100 65 1 1 772 280 281 62 15 chr12 24574687 24574817 -96682713 - MER33 DNA MER1_type 0 324 189 1 772 994 194 32 5 chr12 24574868 24575086 -96682444 - URR1B DNA MER1_type -1 224 1 1 772 204 143 0 0 chr12 24575300 24575342 -96682188 + (GGA)n Simple_repeat Simple_repeat 1 42 0 1 772 939 112 5 14 chr12 24577072 24577281 -96680249 + (TTCC)n Simple_repeat Simple_repeat 1 206 0 1 772 308 238 67 29 chr12 24578005 24578109 -96679421 - PB1D9 SINE Alu 0 120 13 1 772 718 228 38 27 chr12 24578300 24578485 -96679045 + B3 SINE B2 28 214 -2 1 772 747 61 0 0 chr12 24578567 24578665 -96678865 - B1_Mus2 SINE Alu -9 138 41 1 772 229 241 38 145 chr12 24578695 24578733 -96678797 + PB1D7 SINE Alu 3 119 -1 1 772 496 161 21 0 chr12 24578733 24578826 -96678704 + ID_B1 SINE B4 128 222 -2 1 772 538 226 39 46 chr12 24579101 24579231 -96678299 - B1_Mur3 SINE Alu -17 132 4 1 772 558 229 15 8 chr12 24579255 24579387 -96678143 - ID_B1 SINE B4 -4 220 88 1 772 1226 148 13 18 chr12 24580886 24581113 -96676417 + URR1A DNA MER1_type 1 226 0 1 772 198 0 0 0 chr12 24581878 24581900 -96675630 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 772 619 267 50 25 chr12 24581951 24582151 -96675379 + B4A SINE B4 2 206 -86 1 772 604 279 0 0 chr12 24582372 24582501 -96675029 + RSINE1 SINE B4 3 131 -34 1 772 225 250 0 0 chr12 24583168 24583220 -96674310 + G-rich Low_complexity Low_complexity 3 54 0 1 772 1769 154 10 10 chr12 24583439 24583753 -96673777 - MTC LTR MaLR 0 421 108 1 772 642 193 56 21 chr12 24583756 24583899 -96673631 + B1_Mur3 SINE Alu 2 149 0 1 772 447 130 0 0 chr12 24583903 24583980 -96673550 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 1 772 414 79 0 0 chr12 24585264 24585327 -96672203 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 772 615 60 0 0 chr12 24585339 24585423 -96672107 - B2_Mm2 SINE B2 -109 86 3 1 772 327 253 0 0 chr12 24585498 24585577 -96671953 + PB1D10 SINE Alu 32 110 -7 1 772 403 212 12 0 chr12 24585589 24585669 -96671861 + RSINE1 SINE B4 53 133 -32 1 772 313 281 15 30 chr12 24585654 24585786 -96671744 + B1F1 SINE Alu 13 142 -7 1 772 580 207 0 8 chr12 24585822 24585939 -96671591 + B3 SINE B2 15 130 -86 1 772 701 224 30 18 chr12 24586580 24586744 -96670786 - B3A SINE B2 -30 168 3 1 772 220 310 85 17 chr12 24586824 24586942 -96670588 + L2b LINE L2 3036 3161 -214 1 772 309 303 28 0 chr12 24587129 24587238 -96670292 + PB1D7 SINE Alu 3 114 -6 1 772 286 307 8 42 chr12 24587245 24587364 -96670166 - MIRb SINE MIR -149 119 5 1 772 19050 29 0 12 chr12 24588303 24591326 -96666204 + L1Md_A LINE L1 481 3460 -2423 1 772 284 53 0 0 chr12 24591327 24591365 -96666165 + RLTR45 LTR ERVK 445 482 0 1 772 4714 66 87 14 chr12 24591365 24592010 -96665520 + RLTR45-int LTR ERVK 1 692 -6552 1 772 1171 43 0 0 chr12 24592308 24592446 -96665084 + RLTR45-int LTR ERVK 681 818 -6426 1 772 272 263 21 21 chr12 24592845 24592942 -96664588 + MMTV-int LTR ERVK 2413 2509 -4744 1 772 12180 40 38 8 chr12 24593193 24595023 -96662507 + RLTR45-int LTR ERVK 1329 3212 -4032 1 772 4034 81 35 22 chr12 24595004 24595598 -96661932 + RLTR45-int LTR ERVK 3385 3986 -3258 1 772 18398 47 4 3 chr12 24595591 24597762 -96659768 + RLTR45-int LTR ERVK 5065 7237 -7 1 772 1230 34 0 13 chr12 24597762 24597911 -96659619 + B1_Mus2 SINE Alu 1 147 0 1 772 207 0 0 0 chr12 24597911 24597934 -96659596 + (A)n Simple_repeat Simple_repeat 1 23 0 1 772 3068 83 29 109 chr12 24597949 24598473 -96659057 + RLTR45 LTR ERVK 1 482 0 1 772 639 0 0 0 chr12 24600295 24600366 -96657164 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 772 270 0 0 0 chr12 24600366 24600395 -96657135 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 772 238 265 115 18 chr12 24600997 24601119 -96656411 - MIR SINE MIR -60 208 67 1 772 651 274 24 0 chr12 24601581 24601745 -96655785 - B3A SINE B2 -30 168 1 1 772 2113 124 44 0 chr12 24601753 24602091 -96655439 - L1_Mus3 LINE L1 -7 6631 6279 1 772 366 198 265 8 chr12 24602101 24602218 -96655312 - L1MC1 LINE L1 0 6333 6187 1 772 252 241 179 8 chr12 24602245 24602362 -96655168 - L1MC1 LINE L1 -196 6148 6012 1 772 2864 49 0 23 chr12 24602387 24602740 -96654790 + IAPLTR4 LTR ERVK 1 345 0 1 772 725 138 23 23 chr12 24602742 24602875 -96654655 + IAPLTR3-int LTR ERVK 3 135 -6686 1 772 830 209 45 45 chr12 24602874 24603120 -96654410 + IAPLTR3-int LTR ERVK 821 1066 -5755 1 772 711 144 142 101 chr12 24603222 24603514 -96654016 + ETnERV2-int LTR ERVK 2175 2307 -4937 1 772 475 212 88 0 chr12 24603638 24603751 -96653779 + RLTR19-int LTR ERVK 938 1060 -5077 1 772 612 249 380 25 chr12 24603764 24603985 -96653545 + ETnERV2-int LTR ERVK 2454 2753 -4653 1 772 3190 152 163 2 chr12 24604011 24604618 -96652912 + ETnERV2-int LTR ERVK 3567 4271 -3135 1 772 492 185 12 35 chr12 24604623 24604748 -96652782 + MMETn-int LTR ERVK 2357 2464 -2380 1 772 837 81 35 56 chr12 24604756 24604900 -96652630 + MMERVK10C-int LTR ERVK 4530 4670 -2911 1 772 3486 77 0 16 chr12 24605154 24605604 -96651926 + MMERVK10C-int LTR ERVK 5203 5645 -1936 1 772 3445 88 0 4 chr12 24605592 24606048 -96651482 + MMERVK10C-int LTR ERVK 5761 6214 -1367 1 772 4439 208 15 14 chr12 24606031 24606905 -96650625 + IAPLTR3-int LTR ERVK 5927 6801 -20 1 772 2824 56 0 6 chr12 24606905 24607248 -96650282 + IAPLTR4 LTR ERVK 1 341 -4 1 772 451 180 34 23 chr12 24607727 24607903 -96649627 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 772 262 183 28 0 chr12 24607914 24607985 -96649545 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 772 388 188 22 15 chr12 24608005 24608140 -96649390 + (TG)n Simple_repeat Simple_repeat 1 136 0 1 772 207 100 0 0 chr12 24608367 24608397 -96649133 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1 772 394 248 19 13 chr12 24608416 24608571 -96648959 + (TATAA)n Simple_repeat Simple_repeat 2 157 0 1 772 559 302 44 85 chr12 24608582 24608688 -96648842 - RLTR11A2 LTR ERVK -89 438 347 1 772 1213 55 0 0 chr12 24608688 24608834 -96648696 - B1_Mm SINE Alu 0 147 2 1 772 559 302 44 85 chr12 24608834 24609045 -96648485 - RLTR11A2 LTR ERVK -181 346 134 1 772 409 164 12 35 chr12 24609228 24609399 -96648131 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 1 772 194 105 26 0 chr12 24609449 24609487 -96648043 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 1 772 639 217 52 8 chr12 24609560 24609729 -96647801 + Lx2B LINE L1 6625 6800 -176 1 772 211 211 42 0 chr12 24609742 24609813 -96647717 + (TAAA)n Simple_repeat Simple_repeat 1 74 0 1 772 429 20 0 0 chr12 24609814 24609864 -96647666 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 772 2058 254 63 26 chr12 24610426 24611510 -96646020 + L1_Mur2 LINE L1 1002 2082 -3798 1 772 869 146 28 0 chr12 24611727 24611871 -96645659 - B1_Mur4 SINE Alu -1 149 2 1 772 252 295 0 0 chr12 24612168 24612246 -96645284 - ORR1C2 LTR MaLR -14 370 293 1 772 311 306 28 24 chr12 24612397 24612596 -96644934 - MMSAT4 Satellite Satellite -23 199 1 1 772 400 296 78 54 chr12 24612539 24612835 -96644695 - MurSatRep1 Unknown Unknown 0 2137 1835 2 772 2924 94 0 12 chr12 24612852 24613261 -96644269 - L1_Mus1 LINE L1 -1 6566 6163 2 772 497 310 72 44 chr12 24613306 24613910 -96643620 - MurSatRep1 Unknown Unknown 0 2137 1691 2 772 449 280 11 11 chr12 24613899 24614122 -96643408 - MMSAT4 Satellite Satellite 0 223 1 2 772 556 315 52 34 chr12 24614065 24614449 -96643081 - MurSatRep1 Unknown Unknown 0 2137 1747 2 772 425 295 0 0 chr12 24614403 24614542 -96642988 - MMSAT4 Satellite Satellite 0 168 30 2 772 574 310 56 34 chr12 24614482 24614938 -96642592 - MurSatRep1 Unknown Unknown 0 2137 1691 2 772 459 282 26 26 chr12 24614739 24614962 -96642568 - MMSAT4 Satellite Satellite 0 223 1 2 772 8013 193 101 32 chr12 24615075 24616076 -96641454 - MurSatRep1 Unknown Unknown -2 2135 1127 2 772 1303 104 6 0 chr12 24616076 24616259 -96641271 + B2_Mm1a SINE B2 2 185 -8 2 772 8013 193 101 32 chr12 24616259 24617103 -96640427 - MurSatRep1 Unknown Unknown -1011 1126 177 2 772 373 298 65 0 chr12 24617103 24617227 -96640303 + B1_Mur2 SINE Alu 1 132 -17 2 772 8013 193 101 32 chr12 24617227 24617376 -96640154 - MurSatRep1 Unknown Unknown -1961 176 3 2 772 272 250 25 41 chr12 24617793 24617914 -96639616 + Lx4B LINE L1 6936 7054 -4 2 772 203 194 0 0 chr12 24617923 24617959 -96639571 + A-rich Low_complexity Low_complexity 1 36 0 2 772 1188 329 35 60 chr12 24618020 24618738 -96638792 - MTD-int LTR MaLR -108 1262 563 2 772 6060 231 16 8 chr12 24618753 24620157 -96637373 + Lx4B LINE L1 5640 7054 -4 2 772 925 109 0 39 chr12 24620164 24620317 -96637213 + B1_Mus2 SINE Alu 1 147 0 2 772 216 0 0 0 chr12 24620380 24620404 -96637126 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 772 422 362 34 13 chr12 24620468 24620703 -96636827 - MTD-int LTR MaLR -1107 263 24 2 772 348 24 0 0 chr12 24620722 24620763 -96636767 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 772 283 337 101 18 chr12 24620775 24620944 -96636586 - MTD LTR MaLR -16 403 221 2 772 1758 169 76 21 chr12 24620968 24621042 -96636488 + RLTR9D LTR ERVK 1 74 -329 2 772 3280 33 10 5 chr12 24621042 24621436 -96636094 - MTA_Mm LTR MaLR 0 396 1 2 772 1758 169 76 21 chr12 24621436 24621741 -96635789 + RLTR9D LTR ERVK 75 401 -2 2 772 295 369 63 16 chr12 24621741 24621931 -96635599 - MTD LTR MaLR -206 213 15 2 772 467 256 19 34 chr12 24624041 24624247 -96633283 + L1_Mur3 LINE L1 904 1106 -6622 2 772 529 266 175 31 chr12 24624544 24625001 -96632529 + L1_Mur3 LINE L1 1314 1836 -4044 2 772 362 56 37 0 chr12 24625562 24625616 -96631914 + RMER17D LTR ERVK 1 56 -833 2 772 503 176 37 0 chr12 24626853 24626961 -96630569 + Lx3B LINE L1 6862 6973 0 2 772 3471 28 2 0 chr12 24627012 24627407 -96630123 - MTA_Mm LTR MaLR 0 396 1 2 772 9435 29 2 1 chr12 24627407 24628504 -96629026 - MTA_Mm-int LTR MaLR 0 1098 1 2 772 3471 28 2 0 chr12 24628504 24628899 -96628631 - MTA_Mm LTR MaLR 0 396 1 2 772 396 0 0 0 chr12 24629095 24629139 -96628391 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2 772 1103 94 6 0 chr12 24629139 24629298 -96628232 - B2_Mm1a SINE B2 -33 160 1 2 772 245 194 153 0 chr12 24629794 24629866 -96627664 + MER5A1 DNA MER1_type 13 95 -71 2 772 555 276 9 87 chr12 24630096 24630314 -96627216 - ID_B1 SINE B4 -22 202 2 2 772 279 316 108 31 chr12 24630319 24630541 -96626989 - L2b LINE L2 -184 3242 3004 2 772 556 244 81 0 chr12 24630972 24631095 -96626435 - ETnERV2-int LTR ERVK -204 7202 7070 2 772 551 272 92 46 chr12 24631223 24631462 -96626068 + B4A SINE B4 5 254 -38 2 772 619 54 11 11 chr12 24631491 24631584 -96625946 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 772 260 139 0 0 chr12 24632111 24632154 -96625376 - MTC LTR MaLR -287 134 92 2 772 1319 214 92 82 chr12 24632375 24632421 -96625109 - MTD LTR MaLR 0 419 377 2 772 711 175 33 53 chr12 24632421 24632572 -96624958 + B1_Mus1 SINE Alu 1 148 0 2 772 1319 214 92 82 chr12 24632572 24632928 -96624602 - MTD LTR MaLR -43 376 13 2 772 504 59 23 12 chr12 24633066 24633152 -96624378 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 2 772 588 259 0 13 chr12 24633320 24633469 -96624061 + B1_Mm SINE Alu 1 147 0 2 772 349 200 0 0 chr12 24633907 24633967 -96623563 - B3 SINE B2 -87 129 70 2 772 377 89 0 0 chr12 24634220 24634276 -96623254 - RMER6D LTR ERVK -664 56 1 2 772 519 278 71 0 chr12 24634649 24634775 -96622755 + RSINE1 SINE B4 21 155 -10 2 772 2224 140 19 56 chr12 24635810 24635928 -96621602 + MTC LTR MaLR 1 106 -315 2 772 4551 87 31 9 chr12 24635928 24636564 -96620966 + L1Md_F2 LINE L1 5932 6581 -1 2 772 2224 140 19 56 chr12 24636564 24636876 -96620654 + MTC LTR MaLR 107 415 -6 2 772 1339 109 16 0 chr12 24637505 24637697 -96619833 - B2_Mm2 SINE B2 0 195 1 2 772 271 253 13 39 chr12 24637785 24637863 -96619667 - RSINE1 SINE B4 -40 125 50 2 772 971 170 0 7 chr12 24637950 24638098 -96619432 + B1_Mur1 SINE Alu 3 149 0 2 772 249 273 178 70 chr12 24638332 24638648 -96618882 + ORR1E LTR MaLR 1 359 0 2 772 180 302 122 44 chr12 24638658 24638748 -96618782 + L2b LINE L2 3228 3324 -51 2 772 264 30 0 0 chr12 24638788 24638821 -96618709 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 772 311 254 14 14 chr12 24639036 24639108 -96618422 - ID2 SINE ID -10 73 2 2 772 207 146 0 0 chr12 24639598 24639639 -96617891 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2 772 24 53 0 0 chr12 24639670 24639708 -96617822 + AT_rich Low_complexity Low_complexity 1 38 0 2 772 1410 73 16 0 chr12 24639794 24639986 -96617544 - B2_Mm2 SINE B2 0 195 1 2 772 467 282 17 0 chr12 24639987 24640104 -96617426 - RSINE1 SINE B4 -44 121 3 2 772 517 216 10 10 chr12 24640311 24640414 -96617116 - B1_Mur2 SINE Alu -40 109 7 2 772 513 47 0 0 chr12 24640443 24640507 -96617023 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 772 336 234 53 20 chr12 24640549 24640650 -96616880 - B3 SINE B2 -81 117 8 2 772 482 302 29 29 chr12 24641334 24641508 -96616022 + ID_B1 SINE B4 51 224 0 2 773 1597 237 48 5 chr12 24642551 24642950 -96614580 - MTD LTR MaLR -3 416 1 2 773 1269 280 13 32 chr12 24643239 24643578 -96613952 - ORR1D2 LTR MaLR -4 366 31 2 773 1234 134 81 9 chr12 24643578 24643789 -96613741 + URR1A DNA MER1_type 1 226 0 2 773 1269 280 13 32 chr12 24643789 24643822 -96613708 - ORR1D2 LTR MaLR -340 30 1 2 773 944 152 23 6 chr12 24643972 24644144 -96613386 + RMER17D LTR ERVK 713 887 -2 2 773 266 339 34 68 chr12 24644725 24644962 -96612568 - MT2A LTR ERVL -231 302 74 2 773 231 83 0 104 chr12 24645001 24645068 -96612462 + (TTAGGG)n Simple_repeat Simple_repeat 5 64 0 2 773 258 262 121 16 chr12 24645140 24645264 -96612266 - Lx8 LINE L1 -2 7471 7335 2 773 272 191 0 29 chr12 24645283 24645353 -96612177 + CT-rich Low_complexity Low_complexity 3 70 0 2 773 712 252 76 24 chr12 24645892 24646103 -96611427 + ID_B1 SINE B4 1 222 -2 2 773 873 182 173 0 chr12 24646432 24646657 -96610873 - Lx9 LINE L1 0 7644 7381 2 773 327 49 0 0 chr12 24646667 24646708 -96610822 + (T)n Simple_repeat Simple_repeat 1 41 0 2 773 271 295 85 23 chr12 24646855 24647032 -96610498 - Kanga1b DNA Tc2 -104 675 488 2 773 1032 99 0 7 chr12 24647109 24647252 -96610278 + B1_Mm SINE Alu 1 142 -5 2 773 317 86 0 17 chr12 24647267 24647326 -96610204 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 2 773 484 243 18 9 chr12 24647597 24647709 -96609821 + B3A SINE B2 3 115 -83 2 773 198 262 11 56 chr12 24648182 24648271 -96609259 + MER5B DNA MER1_type 32 116 -62 2 773 307 296 31 0 chr12 24648345 24648443 -96609087 - MER5A1 DNA MER1_type 0 166 66 2 773 258 370 15 30 chr12 24648508 24648639 -96608891 + MER3 DNA MER1_type 3 131 -78 2 773 272 250 0 0 chr12 24650443 24650515 -96607015 + B4A SINE B4 1 72 -220 2 773 555 74 0 0 chr12 24650605 24650686 -96606844 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 773 228 35 0 0 chr12 24654047 24654076 -96603454 + (CGGGG)n Simple_repeat Simple_repeat 4 32 0 2 773 839 148 3 8 chr12 24655676 24656040 -96601490 + (CA)n Simple_repeat Simple_repeat 1 361 0 2 773 369 235 12 0 chr12 24656103 24656184 -96601346 - ID2 SINE ID 0 83 2 2 773 777 183 0 14 chr12 24656304 24656448 -96601082 + B1_Mur3 SINE Alu 2 143 -6 2 773 394 346 34 13 chr12 24656471 24656708 -96600822 + MER46C DNA MER2_type 96 337 -1 2 773 1338 51 80 0 chr12 24656771 24656946 -96600584 - B2_Mm2 SINE B2 -5 190 2 2 773 1477 215 100 8 chr12 24657118 24657498 -96600032 + MTD LTR MaLR 5 419 0 2 773 1104 89 0 20 chr12 24657914 24658063 -96599467 - B1_Mus2 SINE Alu 0 147 2 2 773 555 214 9 0 chr12 24658113 24658225 -96599305 + PB1D9 SINE Alu 2 114 -6 2 773 364 159 16 0 chr12 24659115 24659178 -96598352 - B3 SINE B2 -64 152 89 2 773 1047 116 0 0 chr12 24659209 24659355 -96598175 - B1_Mus1 SINE Alu -1 147 2 2 773 513 206 0 30 chr12 24659355 24659455 -96598075 - B3 SINE B2 -117 99 3 2 773 330 252 0 0 chr12 24659471 24659570 -96597960 + (CA)n Simple_repeat Simple_repeat 2 100 0 2 773 617 234 85 16 chr12 24659580 24659780 -96597750 - B3 SINE B2 0 216 13 2 773 763 179 21 7 chr12 24659924 24660065 -96597465 - B1_Mur1 SINE Alu -6 143 1 2 773 919 306 83 114 chr12 24660331 24661039 -96596491 + MER63C DNA AcHobo 240 925 -5 2 773 392 256 85 28 chr12 24661406 24661547 -96595983 + B1F SINE Alu 1 149 0 2 773 1134 88 0 0 chr12 24662172 24662332 -96595198 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 2 773 1152 68 7 0 chr12 24662335 24662481 -96595049 - B1_Mm SINE Alu 0 147 1 2 773 411 204 37 9 chr12 24663019 24663128 -96594402 + Lx3B LINE L1 6862 6973 0 2 773 432 0 0 0 chr12 24663370 24663418 -96594112 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 2 773 366 82 0 0 chr12 24663418 24663467 -96594063 - B2_Mm1t SINE B2 -33 160 112 2 773 561 291 9 87 chr12 24663559 24663777 -96593753 - ID_B1 SINE B4 -22 202 2 2 773 226 326 59 22 chr12 24663852 24663987 -96593543 - L2b LINE L2 -214 3161 3022 2 773 600 276 92 42 chr12 24664688 24664926 -96592604 + B4A SINE B4 5 254 -38 3 773 481 68 13 13 chr12 24664955 24665030 -96592500 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 773 247 111 0 0 chr12 24665578 24665614 -96591916 - MTC LTR MaLR -294 127 92 3 773 311 122 0 0 chr12 24665826 24665875 -96591655 - MTD LTR MaLR 0 421 373 3 773 649 196 7 55 chr12 24665877 24666023 -96591507 + B1_Mus1 SINE Alu 10 148 0 3 773 1264 223 108 21 chr12 24666042 24666377 -96591153 - MTD LTR MaLR -40 379 16 3 773 698 43 11 0 chr12 24666519 24666613 -96590917 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 3 773 542 279 0 13 chr12 24666792 24666941 -96590589 + B1_Mm SINE Alu 1 147 0 3 773 234 128 26 0 chr12 24667180 24667219 -96590311 - MLT1C LTR MaLR -279 188 149 3 773 330 200 0 0 chr12 24667382 24667442 -96590088 - B3 SINE B2 -87 129 70 3 773 403 103 0 0 chr12 24667694 24667752 -96589778 - RMER6D LTR ERVK -662 58 1 3 773 531 296 68 0 chr12 24668125 24668257 -96589273 + RSINE1 SINE B4 21 161 -4 3 773 2385 159 16 42 chr12 24669287 24669713 -96587817 + MTC LTR MaLR 1 415 -6 3 773 858 241 30 10 chr12 24669833 24670034 -96587496 + RLTR46 LTR ERVK 1 205 -115 3 773 13130 102 14 4 chr12 24670034 24671830 -96585700 - MMERVK10C-int LTR ERVK -3883 3698 1885 3 773 370 148 123 0 chr12 24671821 24671902 -96585628 - MMERVK10C-int LTR ERVK -4227 1179 1089 3 773 1603 191 172 40 chr12 24671907 24672026 -96585504 - MMERVK10C-int LTR ERVK -4587 819 703 3 773 1685 31 0 0 chr12 24672026 24672217 -96585313 - B2_Mm1a SINE B2 -2 191 1 3 773 1603 191 172 40 chr12 24672217 24672544 -96584986 - MMERVK10C-int LTR ERVK -4704 702 314 3 773 2932 230 53 58 chr12 24672527 24673399 -96584131 - MMERVK10C-int LTR ERVK -6714 867 1 3 773 1871 165 3 6 chr12 24673399 24673711 -96583819 - RLTR10E LTR ERVK 0 311 1 3 773 3177 251 41 63 chr12 24673711 24674618 -96582912 - MTC-int LTR MaLR -276 982 96 3 773 209 33 33 0 chr12 24674682 24674712 -96582818 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 3 773 1055 223 229 0 chr12 24674714 24675037 -96582493 + MTD LTR MaLR 23 419 0 3 773 480 224 58 58 chr12 24675043 24675199 -96582331 + MTD-int LTR MaLR 1 156 -1102 3 773 553 272 40 7 chr12 24675346 24675494 -96582036 + RSINE1 SINE B4 5 157 -8 3 773 893 151 7 0 chr12 24675622 24675768 -96581762 - B1_Mus1 SINE Alu -1 147 1 3 773 785 207 20 14 chr12 24675816 24675963 -96581567 + B1_Mur1 SINE Alu 2 149 0 3 773 281 284 40 0 chr12 24675976 24676050 -96581480 + ID4_ SINE ID 1 77 -6 3 773 259 326 54 0 chr12 24676050 24676068 -96581462 + ID_B1 SINE B4 1 97 -127 3 773 1335 52 0 0 chr12 24676098 24676270 -96581260 + (TAGA)n Simple_repeat Simple_repeat 4 175 0 3 773 1344 73 0 0 chr12 24676272 24676493 -96581037 + (GAAA)n Simple_repeat Simple_repeat 1 221 0 3 773 1155 29 0 0 chr12 24676495 24676634 -96580896 + (GGAA)n Simple_repeat Simple_repeat 3 141 0 3 773 3972 51 12 14 chr12 24676906 24677400 -96580130 + MT2_Mm LTR ERVL 1 493 0 3 773 620 228 124 20 chr12 24677633 24677834 -96579696 - B4A SINE B4 -68 224 3 3 773 319 282 43 161 chr12 24677863 24677973 -96579557 + MLT1B LTR MaLR 165 253 -137 3 773 2615 93 39 8 chr12 24677973 24678361 -96579169 - MTB LTR MaLR 0 400 1 3 773 319 282 43 161 chr12 24678361 24678436 -96579094 + MLT1B LTR MaLR 254 328 -62 3 773 281 278 34 77 chr12 24678568 24678631 -96578899 - PB1D10 SINE Alu -1 116 52 3 773 906 158 7 0 chr12 24678631 24678777 -96578753 + B1_Mus1 SINE Alu 1 147 -1 3 773 281 278 34 77 chr12 24678777 24678830 -96578700 - PB1D10 SINE Alu -66 51 5 3 773 269 234 109 0 chr12 24678794 24678858 -96578672 - ID_B1 SINE B4 -103 121 51 3 773 992 290 9 0 chr12 24678991 24679215 -96578315 + MTEa LTR MaLR 1 226 -153 3 773 190 122 195 0 chr12 24679427 24679468 -96578062 + L3 LINE CR1 915 963 -3526 3 773 295 321 35 21 chr12 24680142 24680285 -96577245 - MLT1N2 LTR MaLR -5 557 413 3 773 513 267 146 66 chr12 24680871 24681068 -96576462 + RMER10A LTR ERVL 65 278 -164 3 773 225 0 0 0 chr12 24681068 24681093 -96576437 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 773 477 0 0 0 chr12 24681093 24681145 -96576385 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 773 513 267 146 66 chr12 24681145 24681295 -96576235 + RMER10A LTR ERVL 279 440 -2 3 773 545 250 116 14 chr12 24681434 24681580 -96575950 - RSINE1 SINE B4 -2 163 3 3 773 711 209 37 40 chr12 24682194 24682388 -96575142 + MTD LTR MaLR 3 193 -203 3 773 724 272 73 0 chr12 24682392 24682561 -96574969 + B3 SINE B2 6 188 -28 3 773 201 39 0 0 chr12 24682561 24682587 -96574943 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 3 773 724 192 38 146 chr12 24682587 24682630 -96574900 + B3 SINE B2 165 209 -7 3 773 815 263 30 57 chr12 24682636 24682855 -96574675 + MTD LTR MaLR 196 405 -14 3 773 206 236 0 0 chr12 24683190 24683245 -96574285 + A-rich Low_complexity Low_complexity 1 55 0 3 773 776 145 7 68 chr12 24683298 24683446 -96574084 + B1_Mus1 SINE Alu 10 148 0 3 773 307 292 8 74 chr12 24683339 24683461 -96574069 + RLTR25B LTR ERVK 442 555 -473 3 773 286 164 25 91 chr12 24683461 24683537 -96573993 + (CAAA)n Simple_repeat Simple_repeat 1 73 0 3 773 1096 82 0 39 chr12 24683537 24683690 -96573840 + B1_Mus1 SINE Alu 2 148 0 3 773 286 164 25 91 chr12 24683690 24683722 -96573808 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 773 977 65 7 0 chr12 24683722 24683860 -96573670 + (GAAAA)n Simple_repeat Simple_repeat 2 140 0 3 773 286 164 25 91 chr12 24683860 24683871 -96573659 + (CAAA)n Simple_repeat Simple_repeat 4 13 0 3 773 543 251 117 69 chr12 24683877 24684065 -96573465 + B3 SINE B2 2 198 0 3 773 789 241 22 32 chr12 24684118 24684158 -96573372 - B3A SINE B2 -2 214 180 3 773 234 0 0 0 chr12 24684158 24684184 -96573346 + (TGG)n Simple_repeat Simple_repeat 1 26 0 3 773 789 219 20 20 chr12 24684184 24684361 -96573169 - B3A SINE B2 -19 179 2 3 773 551 252 20 0 chr12 24684375 24684522 -96573008 + L1MD LINE L1 5417 5566 -676 3 773 606 235 63 21 chr12 24684523 24684724 -96572806 + MT2A LTR ERVL 1 209 -284 3 773 1763 202 62 66 chr12 24684685 24685128 -96572402 - RMER17D2 LTR ERVK -32 874 361 3 773 1364 0 0 6 chr12 24685128 24685285 -96572245 + (GGAGA)n Simple_repeat Simple_repeat 2 157 0 3 773 1763 200 31 63 chr12 24685285 24685391 -96572139 - RMER17D2 LTR ERVK -543 363 252 3 773 249 98 0 0 chr12 24687370 24687411 -96570119 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 773 270 143 0 0 chr12 24687430 24687493 -96570037 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 3 773 771 42 0 0 chr12 24687653 24687748 -96569782 + (TC)n Simple_repeat Simple_repeat 2 96 0 3 773 447 197 157 33 chr12 24687754 24687875 -96569655 - B1_Mur2 SINE Alu -13 136 1 3 773 756 238 85 0 chr12 24687902 24688091 -96569439 - B3 SINE B2 -9 207 3 3 773 24 0 0 0 chr12 24688560 24688584 -96568946 + AT_rich Low_complexity Low_complexity 1 24 0 3 773 680 221 36 0 chr12 24688589 24688729 -96568801 - B1_Mus1 SINE Alu -1 147 3 3 773 399 98 0 0 chr12 24689073 24689134 -96568396 + (TCCCC)n Simple_repeat Simple_repeat 2 62 0 3 773 400 182 25 25 chr12 24689165 24689244 -96568286 - B2_Mm2 SINE B2 -102 93 15 3 773 478 203 66 66 chr12 24689275 24689412 -96568118 - B1F1 SINE Alu 0 149 13 3 773 447 264 11 0 chr12 24689397 24689488 -96568042 - RSINE1 SINE B4 -32 133 42 3 773 378 244 0 0 chr12 24689482 24689560 -96567970 - PB1D10 SINE Alu 0 117 40 3 773 605 84 0 0 chr12 24689643 24689726 -96567804 + B2_Mm2 SINE B2 3 85 -110 3 773 728 22 11 0 chr12 24689730 24689820 -96567710 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 773 2687 120 5 14 chr12 24689900 24690313 -96567217 + RLTR9E LTR ERVK 1 409 0 3 773 7577 207 55 17 chr12 24690314 24691935 -96565595 + ETnERV-int LTR ERVK 2 2419 -3389 3 773 16043 197 46 35 chr12 24691995 24696011 -96561519 + ETnERV2-int LTR ERVK 1611 6429 -977 3 773 504 92 0 26 chr12 24696221 24696299 -96561231 + ETnERV2-int LTR ERVK 7331 7406 0 3 773 2610 136 5 5 chr12 24696299 24696706 -96560824 + RLTR9E LTR ERVK 1 407 -2 3 773 237 221 0 0 chr12 24697553 24697621 -96559909 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 773 32 0 0 0 chr12 24697676 24697708 -96559822 + AT_rich Low_complexity Low_complexity 1 32 0 3 773 653 66 11 0 chr12 24698397 24698488 -96559042 + (TC)n Simple_repeat Simple_repeat 1 92 0 3 773 311 78 20 0 chr12 24698488 24698538 -96558992 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 773 294 291 58 0 chr12 24698563 24698649 -96558881 - RSINE1 SINE B4 -28 137 47 3 773 812 198 170 106 chr12 24698774 24699085 -96558445 - MTE2a LTR MaLR -14 365 35 3 773 1334 163 5 9 chr12 24699088 24699311 -96558219 - URR1B DNA MER1_type -3 222 1 3 773 929 152 14 0 chr12 24699342 24699487 -96558043 + B1_Mus1 SINE Alu 1 147 -1 3 773 771 228 99 11 chr12 24699515 24699706 -96557824 + B3 SINE B2 3 210 -6 3 773 273 151 74 6 chr12 24699740 24699794 -96557736 - MTE2a LTR MaLR -369 52 1 3 773 591 191 35 9 chr12 24700889 24701005 -96556525 + MTC LTR MaLR 1 119 -302 3 773 483 155 0 0 chr12 24701005 24701108 -96556422 + CT-rich Low_complexity Low_complexity 1 103 0 3 773 432 0 0 0 chr12 24701118 24701166 -96556364 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 3 773 647 197 44 22 chr12 24701167 24701302 -96556228 - B1_Mur3 SINE Alu -10 139 2 3 773 1404 126 13 18 chr12 24701985 24702212 -96555318 - URR1A DNA MER1_type 0 226 1 3 773 686 215 18 0 chr12 24703645 24703788 -96553742 + ID_B1 SINE B4 73 217 -7 3 773 632 187 47 31 chr12 24703820 24703947 -96553583 + B1_Mur3 SINE Alu 9 137 -12 3 773 378 0 0 0 chr12 24703987 24704029 -96553501 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 773 2278 107 0 59 chr12 24704280 24704637 -96552893 - RLTR10D LTR ERVK -23 336 1 3 773 12828 66 2 1 chr12 24704637 24706208 -96551322 - IAP-d-int LTR ERVK 0 6542 4970 3 773 8058 70 13 44 chr12 24706206 24707296 -96550234 - IAP-d-int LTR ERVK -5486 1056 1 3 773 2521 111 0 45 chr12 24707296 24707672 -96549858 - RLTR10D LTR ERVK 0 359 1 3 773 352 261 77 17 chr12 24707672 24707789 -96549741 - ID_B1 SINE B4 -27 197 74 3 773 242 29 0 28 chr12 24707789 24707825 -96549705 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 773 874 70 0 0 chr12 24707825 24707939 -96549591 - B1_Mm SINE Alu -10 137 24 3 773 629 231 113 26 chr12 24708016 24708211 -96549319 - B3 SINE B2 0 216 5 3 773 355 218 10 10 chr12 24708410 24708512 -96549018 + GA-rich Low_complexity Low_complexity 3 104 0 3 773 225 0 0 0 chr12 24709470 24709495 -96548035 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 773 633 14 0 0 chr12 24709495 24709568 -96547962 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 773 2062 205 22 44 chr12 24710690 24711149 -96546381 + RLTR1D LTR ERV1 157 605 0 4 773 30020 246 27 21 chr12 24711149 24718298 -96539232 + MMERGLN-int LTR ERV1 1 7251 -305 4 773 1994 40 12 0 chr12 24718299 24718548 -96538982 + RLTR13B1 LTR ERVK 642 893 0 4 773 249 174 0 0 chr12 24718977 24719046 -96538484 + T-rich Low_complexity Low_complexity 1 69 0 4 773 500 310 37 19 chr12 24719067 24719228 -96538302 + RSINE1 SINE B4 1 164 -1 4 773 2230 88 3 70 chr12 24719954 24720296 -96537234 - ORR1A2 LTR MaLR -8 319 1 4 773 266 286 6 0 chr12 24720308 24720479 -96537051 + (CA)n Simple_repeat Simple_repeat 1 172 0 4 773 836 193 0 7 chr12 24720557 24720703 -96536827 - B1_Mur4 SINE Alu -5 145 1 4 773 1671 26 0 5 chr12 24720735 24720928 -96536602 - B2_Mm1a SINE B2 0 193 2 4 773 502 302 43 12 chr12 24720950 24721114 -96536416 - B3A SINE B2 -28 170 2 4 773 630 275 26 88 chr12 24721131 24721358 -96536172 - B4A SINE B4 -72 220 8 4 773 813 221 28 42 chr12 24722247 24722464 -96535066 - ID_B1 SINE B4 -8 216 3 4 773 835 172 0 20 chr12 24722493 24722641 -96534889 - B1_Mur4 SINE Alu -5 145 1 4 773 240 284 136 0 chr12 24722643 24722724 -96534806 - PB1D10 SINE Alu -14 103 12 4 773 612 239 171 123 chr12 24724468 24724798 -96532732 - MTE2a LTR MaLR -1 418 35 4 773 1306 180 0 5 chr12 24724798 24725021 -96532509 - URR1B DNA MER1_type -3 222 1 4 773 525 304 85 97 chr12 24725021 24725052 -96532478 - MTE2a LTR MaLR -342 77 50 4 773 891 166 14 0 chr12 24725052 24725197 -96532333 + B1_Mus1 SINE Alu 1 147 -1 4 773 525 304 85 97 chr12 24725197 24725225 -96532305 - MTE2a LTR MaLR -370 49 32 4 773 595 251 135 11 chr12 24725225 24725410 -96532120 + B3 SINE B2 3 210 -6 4 773 525 304 85 97 chr12 24725410 24725430 -96532100 - MTE2a LTR MaLR -388 31 13 4 773 24 0 0 0 chr12 24725430 24725454 -96532076 + AT_rich Low_complexity Low_complexity 1 24 0 4 773 249 167 83 0 chr12 24725458 24725506 -96532024 - MTE2a LTR MaLR -327 52 1 4 773 1749 16 0 0 chr12 24725874 24726067 -96531463 + B2_Mm1a SINE B2 1 193 0 4 773 2237 149 10 139 chr12 24726822 24726934 -96530596 + MTC LTR MaLR 1 114 -307 4 773 664 52 21 0 chr12 24726934 24727031 -96530499 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 773 2237 149 10 139 chr12 24727031 24727083 -96530447 + MTC LTR MaLR 115 115 -306 4 773 545 223 63 21 chr12 24727083 24727225 -96530305 - B1_Mur3 SINE Alu 0 149 2 4 773 2237 149 10 139 chr12 24727225 24727542 -96529988 + MTC LTR MaLR 115 421 0 4 773 249 304 79 18 chr12 24727544 24727658 -96529872 - MIRb SINE MIR -125 143 23 4 773 226 241 161 0 chr12 24728327 24728414 -96529116 + MER2 DNA MER2_type 96 196 -149 4 773 710 232 0 0 chr12 24728472 24728597 -96528933 - RSINE1 SINE B4 -38 127 3 4 773 692 258 55 30 chr12 24728825 24729025 -96528505 - B4A SINE B4 -86 206 2 4 773 211 202 146 37 chr12 24729028 24729110 -96528420 + MIR SINE MIR 90 180 -82 4 773 1220 170 13 22 chr12 24729841 24730069 -96527461 - URR1A DNA MER1_type 0 226 1 4 773 10487 80 1 1 chr12 24731502 24732889 -96524641 + L1Md_F2 LINE L1 4199 5585 -298 4 773 7943 55 2 4 chr12 24732890 24733876 -96523654 + L1Md_F2 LINE L1 5587 6570 -12 4 773 724 169 8 8 chr12 24733903 24734028 -96523502 + ID_B1 SINE B4 92 216 -8 4 773 634 187 47 31 chr12 24734058 24734185 -96523345 + B1_Mur3 SINE Alu 9 137 -12 4 773 213 139 0 0 chr12 24734195 24734238 -96523292 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 773 312 119 0 0 chr12 24734237 24734296 -96523234 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 773 595 226 60 0 chr12 24734500 24734633 -96522897 - ID_B1 SINE B4 -2 222 82 4 773 215 31 0 30 chr12 24734648 24734681 -96522849 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 773 826 101 0 0 chr12 24734681 24734800 -96522730 - B1_Mus1 SINE Alu -7 141 23 4 773 654 246 33 44 chr12 24734873 24735056 -96522474 - B3 SINE B2 -2 214 34 4 773 430 246 3 2 chr12 24735248 24735360 -96522170 + B1_Mur4 SINE Alu 9 120 0 4 773 460 139 43 9 chr12 24736081 24736197 -96521333 + GA-rich Low_complexity Low_complexity 1 120 0 4 773 273 159 0 0 chr12 24738863 24738926 -96518604 + CT-rich Low_complexity Low_complexity 1 63 0 4 773 1038 171 37 5 chr12 24739140 24739357 -96518173 + URR1B DNA MER1_type 1 224 -1 4 773 372 279 54 8 chr12 24739408 24739538 -96517992 + MER33 DNA MER1_type 189 324 0 4 773 580 301 25 19 chr12 24740008 24740167 -96517363 + RSINE1 SINE B4 1 160 -5 4 773 816 11 0 0 chr12 24740853 24740946 -96516584 + (TTCTC)n Simple_repeat Simple_repeat 1 93 0 4 773 315 104 0 0 chr12 24740946 24740994 -96516536 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 773 2199 109 0 59 chr12 24741005 24741346 -96516184 - ORR1A2 LTR MaLR -4 323 3 4 773 297 268 0 0 chr12 24741347 24741418 -96516112 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 773 932 179 0 0 chr12 24741496 24741641 -96515889 - B1_Mur4 SINE Alu -5 145 1 4 773 317 297 153 42 chr12 24741645 24741835 -96515695 - B3A SINE B2 -4 212 2 4 773 322 252 31 102 chr12 24741847 24741975 -96515555 - B4A SINE B4 -66 226 108 4 773 787 201 47 42 chr12 24742918 24743131 -96514399 - ID_B1 SINE B4 -8 216 3 4 773 862 176 7 0 chr12 24743178 24743326 -96514204 - B1_Mur4 SINE Alu -1 149 1 4 773 261 250 167 0 chr12 24743328 24743412 -96514118 - PB1D10 SINE Alu -14 103 6 4 773 181 274 145 34 chr12 24743964 24744081 -96513449 + MIRc SINE MIR 14 143 -125 4 773 3793 11 121 0 chr12 24746667 24747107 -96510423 - MT2_Mm LTR ERVL 0 493 1 4 773 238 268 14 14 chr12 24747316 24747388 -96510142 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 773 281 243 120 31 chr12 24747975 24748104 -96509426 - MIR SINE MIR -66 202 65 4 773 780 260 23 0 chr12 24748551 24748724 -96508806 - B3A SINE B2 -21 177 1 4 773 2278 100 41 6 chr12 24748732 24749074 -96508456 - L1_Mus3 LINE L1 -6 6632 6279 4 773 391 181 265 8 chr12 24749084 24749201 -96508329 - L1MC1 LINE L1 0 6333 6187 4 773 373 183 45 7 chr12 24749833 24749987 -96507543 + (TG)n Simple_repeat Simple_repeat 2 161 0 4 773 365 199 16 43 chr12 24750021 24750205 -96507325 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 773 322 236 40 27 chr12 24750445 24750593 -96506937 + A-rich Low_complexity Low_complexity 5 154 0 4 773 744 288 48 92 chr12 24750606 24750741 -96506789 - RLTR11A2 LTR ERVK -63 464 347 4 773 1174 75 0 0 chr12 24750741 24750888 -96506642 - B1_Mm SINE Alu 0 147 1 4 773 744 288 48 92 chr12 24750888 24751089 -96506441 - RLTR11A2 LTR ERVK -181 346 143 4 773 649 174 7 15 chr12 24751310 24751580 -96505950 + (TA)n Simple_repeat Simple_repeat 1 267 0 4 773 626 234 45 28 chr12 24751673 24751849 -96505681 + Lx2B LINE L1 6625 6803 -197 4 773 24 53 0 0 chr12 24751858 24751896 -96505634 + AT_rich Low_complexity Low_complexity 1 38 0 4 773 279 79 0 0 chr12 24751909 24751947 -96505583 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 773 428 243 20 0 chr12 24751983 24752135 -96505395 + (TA)n Simple_repeat Simple_repeat 2 156 0 4 773 432 196 24 0 chr12 24752136 24752304 -96505226 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 4 773 527 220 84 16 chr12 24752349 24752519 -96505011 + Lx2B LINE L1 6623 6796 -212 4 773 21 0 0 0 chr12 24752530 24752551 -96504979 + AT_rich Low_complexity Low_complexity 1 21 0 4 773 246 32 0 0 chr12 24752574 24752605 -96504925 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 773 288 53 0 0 chr12 24752605 24752643 -96504887 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 773 465 236 53 24 chr12 24753203 24753372 -96504158 + L1_Mur3 LINE L1 1048 1221 -6507 4 773 1758 246 70 62 chr12 24753357 24753994 -96503536 + L1_Mur3 LINE L1 1087 1773 -4107 4 773 1149 55 0 27 chr12 24753994 24754143 -96503387 + B1_Mm SINE Alu 2 146 -1 4 773 1758 244 68 73 chr12 24754143 24754488 -96503042 + L1_Mur3 LINE L1 1774 2082 -3798 4 773 850 139 14 27 chr12 24754741 24754889 -96502641 - B1_Mus1 SINE Alu -1 147 2 4 773 296 261 0 0 chr12 24755183 24755252 -96502278 - ORR1C2 LTR MaLR -14 370 302 4 773 371 304 65 44 chr12 24755472 24755556 -96501974 - MurSatRep1 Unknown Unknown -1 2136 1993 4 773 373 277 14 14 chr12 24755556 24755695 -96501835 - MMSAT4 Satellite Satellite 0 168 30 4 773 371 304 65 44 chr12 24755695 24755786 -96501744 - MurSatRep1 Unknown Unknown -1 1992 1832 4 773 3014 91 0 2 chr12 24755786 24756192 -96501338 - L1_Mus1 LINE L1 0 6567 6163 4 773 289 324 30 47 chr12 24756192 24756249 -96501281 - MurSatRep1 Unknown Unknown -106 2031 1911 4 773 304 290 24 24 chr12 24756249 24756376 -96501154 - MMSAT4 Satellite Satellite -12 156 30 4 773 289 324 30 47 chr12 24756376 24756450 -96501080 - MurSatRep1 Unknown Unknown -106 1910 1748 4 773 421 295 0 0 chr12 24756405 24756544 -96500986 - MMSAT4 Satellite Satellite 0 168 30 4 773 542 301 48 37 chr12 24756488 24757329 -96500201 - MurSatRep1 Unknown Unknown 0 2137 1831 4 773 500 309 0 0 chr12 24757329 24757481 -96500049 - MMSAT4 Satellite Satellite 0 168 17 4 773 542 301 48 37 chr12 24757481 24757710 -96499820 - MurSatRep1 Unknown Unknown 0 1830 1747 4 773 248 302 33 33 chr12 24757665 24757785 -96499745 - MMSAT4 Satellite Satellite 0 168 49 4 773 8047 194 97 27 chr12 24757917 24758914 -96498616 - MurSatRep1 Unknown Unknown -2 2135 1120 4 773 1365 81 11 0 chr12 24758914 24759100 -96498430 + B2_Mm1a SINE B2 2 189 -4 4 773 8047 194 97 27 chr12 24759100 24759946 -96497584 - MurSatRep1 Unknown Unknown -1018 1119 165 4 773 350 306 65 0 chr12 24759946 24760070 -96497460 + B1_Mur2 SINE Alu 1 132 -17 4 773 8047 194 97 27 chr12 24760070 24760219 -96497311 - MurSatRep1 Unknown Unknown -1973 164 2 4 773 240 303 120 101 chr12 24760314 24760523 -96497007 + B3 SINE B2 4 216 0 4 773 207 189 0 0 chr12 24760730 24760767 -96496763 + A-rich Low_complexity Low_complexity 4 40 0 4 773 1611 324 35 45 chr12 24760829 24761537 -96495993 - MTD-int LTR MaLR -108 1262 562 4 773 6028 238 15 8 chr12 24761547 24762958 -96494572 + Lx4B LINE L1 5637 7057 -1 4 773 542 319 45 97 chr12 24762996 24763297 -96494233 - MTD-int LTR MaLR -1219 361 28 4 773 231 114 0 0 chr12 24763319 24763354 -96494176 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 773 368 330 126 16 chr12 24763369 24763560 -96493970 - MTD LTR MaLR -16 403 192 4 773 541 68 40 0 chr12 24763562 24763633 -96493897 + RLTR9D LTR ERVK 1 74 -329 4 773 3053 42 8 0 chr12 24763633 24764011 -96493519 - MTA_Mm LTR MaLR 0 396 16 4 773 342 204 20 0 chr12 24765265 24765363 -96492167 + L1_Mur3 LINE L1 904 1003 -6725 4 773 2537 130 82 126 chr12 24765364 24765982 -96491548 - RLTR6_Mm LTR ERV1 -63 591 1 4 773 22731 40 61 17 chr12 24765982 24768818 -96488712 - MMVL30-int LTR ERV1 0 3698 738 4 773 5868 41 66 41 chr12 24768859 24769876 -96487654 - MMVL30-int LTR ERV1 -2951 747 21 4 773 2625 130 81 124 chr12 24769876 24770507 -96487023 - RLTR6_Mm LTR ERV1 -50 604 1 4 773 454 273 82 4 chr12 24770908 24771140 -96486390 + L1_Mur3 LINE L1 1314 1563 -4314 4 773 436 256 25 89 chr12 24771153 24771355 -96486175 + L1_Mur3 LINE L1 1648 1836 -4044 4 96 5219 113 33 33 chr12 24771918 24772805 -96484725 + RMER17D LTR ERVK 1 887 -2 4 774 306 321 46 80 chr12 24773386 24773623 -96483907 - MT2A LTR ERVL -231 302 74 5 774 260 195 66 44 chr12 24773662 24773753 -96483777 + (TTAGGG)n Simple_repeat Simple_repeat 2 94 0 5 774 21 36 0 0 chr12 24773779 24773807 -96483723 + AT_rich Low_complexity Low_complexity 1 28 0 5 774 259 150 33 0 chr12 24773943 24774003 -96483527 + CT-rich Low_complexity Low_complexity 3 64 0 5 774 241 272 169 81 chr12 24774041 24774201 -96483329 - Lx8 LINE L1 -322 7151 6978 5 774 690 256 70 28 chr12 24774521 24774734 -96482796 + ID_B1 SINE B4 1 222 -2 5 774 769 200 173 0 chr12 24775070 24775295 -96482235 - Lx9 LINE L1 0 7644 7381 5 774 1035 113 0 0 chr12 24775347 24775489 -96482041 + B1_Mm SINE Alu 1 142 -5 5 774 208 49 23 47 chr12 24775511 24775554 -96481976 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 5 774 498 273 138 11 chr12 24775824 24775998 -96481532 + B3A SINE B2 3 198 0 5 774 232 262 12 59 chr12 24776409 24776494 -96481036 + MER5B DNA MER1_type 32 112 -66 5 774 266 344 98 13 chr12 24776571 24776724 -96480806 - MER5A1 DNA MER1_type 0 166 1 5 774 281 386 15 30 chr12 24776734 24776865 -96480665 + MER3 DNA MER1_type 3 131 -78 5 774 295 252 35 174 chr12 24778335 24778479 -96479051 + B4A SINE B4 1 125 -40 5 774 549 100 0 0 chr12 24778496 24778586 -96478944 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 774 190 267 149 3 chr12 24778971 24779045 -96478485 + MIRm SINE MIR 74 161 -115 5 774 1608 47 0 10 chr12 24779139 24779334 -96478196 + B2_Mm1a SINE B2 1 193 0 5 774 186 128 0 0 chr12 24780540 24780579 -96476951 + (C)n Simple_repeat Simple_repeat 1 39 0 5 774 845 156 4 0 chr12 24783804 24784064 -96473466 + (CA)n Simple_repeat Simple_repeat 1 261 0 5 774 371 235 12 0 chr12 24784127 24784208 -96473322 - ID2 SINE ID 0 83 2 5 774 23 68 0 0 chr12 24784281 24784325 -96473205 + AT_rich Low_complexity Low_complexity 1 44 0 5 774 761 180 0 21 chr12 24784331 24784473 -96473057 + B1_Mur3 SINE Alu 5 143 -6 5 774 578 329 34 13 chr12 24784494 24784731 -96472799 + MER46C DNA MER2_type 96 337 -1 5 774 1461 218 100 8 chr12 24784957 24785337 -96472193 + MTD LTR MaLR 5 419 0 5 774 1111 89 0 20 chr12 24785753 24785902 -96471628 - B1_Mus2 SINE Alu 0 147 2 5 774 567 214 9 0 chr12 24785952 24786064 -96471466 + PB1D9 SINE Alu 2 114 -6 5 774 427 236 163 99 chr12 24786954 24787017 -96470513 - B3 SINE B2 -64 152 100 5 774 935 105 27 20 chr12 24787017 24787163 -96470367 - B1_Mus1 SINE Alu 0 148 2 5 774 427 236 163 99 chr12 24787163 24787240 -96470290 - B3 SINE B2 -117 99 3 5 774 213 296 0 0 chr12 24787257 24787355 -96470175 + (CA)n Simple_repeat Simple_repeat 1 98 0 5 774 694 244 68 15 chr12 24787363 24787566 -96469964 - B3 SINE B2 -1 215 13 5 774 751 179 21 7 chr12 24787710 24787851 -96469679 - B1_Mur1 SINE Alu -6 143 1 5 774 977 309 120 17 chr12 24788113 24788531 -96468999 + MER63C DNA AcHobo 233 693 -237 5 774 267 279 52 41 chr12 24788466 24788563 -96468967 - MER63D DNA AcHobo -427 634 537 5 774 537 326 22 0 chr12 24788602 24788785 -96468745 + MER63C DNA AcHobo 691 877 -53 5 774 2296 71 29 3 chr12 24788785 24789096 -96468434 + IAPLTR2b LTR ERVK 1 319 -8 5 774 399 228 92 35 chr12 24789518 24789659 -96467871 + B1F SINE Alu 1 149 0 5 774 1137 128 0 0 chr12 24790289 24790469 -96467061 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 774 845 100 0 8 chr12 24790487 24790618 -96466912 + (TTTC)n Simple_repeat Simple_repeat 1 130 0 5 774 1157 69 7 0 chr12 24790620 24790764 -96466766 - B1_Mm SINE Alu 0 147 3 5 774 473 194 37 0 chr12 24791304 24791412 -96466118 + Lx3B LINE L1 6862 6973 0 5 774 483 18 0 0 chr12 24791654 24791710 -96465820 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 5 774 871 75 194 0 chr12 24791710 24791844 -96465686 - B2_Mm1a SINE B2 -33 160 1 5 774 276 194 153 0 chr12 24792339 24792411 -96465119 + MER5A1 DNA MER1_type 13 95 -71 5 774 627 242 50 128 chr12 24792643 24792861 -96464669 - ID_B1 SINE B4 -22 202 2 5 774 294 299 135 35 chr12 24792866 24793095 -96464435 - L2a LINE L2 -184 3242 2991 5 774 507 268 81 0 chr12 24793514 24793637 -96463893 - ETnERV2-int LTR ERVK -204 7202 7070 5 774 722 263 92 42 chr12 24793765 24794003 -96463527 + B4A SINE B4 5 254 -38 5 774 663 57 19 9 chr12 24794032 24794138 -96463392 + (CA)n Simple_repeat Simple_repeat 1 107 0 5 774 306 93 0 0 chr12 24794676 24794719 -96462811 - MTC LTR MaLR -287 134 92 5 774 200 297 0 0 chr12 24794753 24794817 -96462713 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 774 1518 204 89 87 chr12 24794940 24794986 -96462544 - MTD LTR MaLR 0 419 380 5 774 725 175 33 53 chr12 24794986 24795137 -96462393 + B1_Mus1 SINE Alu 1 148 0 5 774 1518 204 89 87 chr12 24795137 24795493 -96462037 - MTD LTR MaLR -40 379 16 5 774 647 35 12 0 chr12 24795635 24795721 -96461809 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 5 774 541 267 7 14 chr12 24795901 24796049 -96461481 + B1_Mm SINE Alu 1 147 0 5 774 234 128 26 0 chr12 24796288 24796327 -96461203 - MLT1C LTR MaLR -279 188 149 5 774 350 228 52 0 chr12 24796442 24796553 -96460977 - B3 SINE B2 0 216 70 5 774 431 85 0 0 chr12 24796804 24796863 -96460667 - RMER6D LTR ERVK -661 59 1 5 774 215 304 74 25 chr12 24796863 24796937 -96460593 - B4A SINE B4 -212 80 3 5 774 578 273 63 21 chr12 24797226 24797368 -96460162 + RSINE1 SINE B4 14 161 -4 5 774 2504 140 16 45 chr12 24798376 24798803 -96458727 + MTC LTR MaLR 1 415 -6 5 774 187 329 92 49 chr12 24799207 24799370 -96458160 + L2b LINE L2 2791 2960 -459 5 774 1409 89 21 0 chr12 24799432 24799622 -96457908 - B2_Mm2 SINE B2 -1 194 1 5 774 332 284 82 31 chr12 24799692 24799790 -96457740 - RSINE1 SINE B4 -13 152 50 5 774 1026 150 0 0 chr12 24799877 24800024 -96457506 + B1_Mur1 SINE Alu 3 149 0 5 774 382 283 209 73 chr12 24800251 24800567 -96456963 + ORR1E LTR MaLR 1 359 0 5 774 212 319 112 41 chr12 24800569 24800667 -96456863 + L2b LINE L2 3220 3324 -51 5 774 513 32 0 0 chr12 24800707 24800770 -96456760 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 774 335 250 13 13 chr12 24800979 24801056 -96456474 - ID2 SINE ID -5 78 2 5 774 207 146 0 0 chr12 24801546 24801587 -96455943 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 5 774 31 26 0 0 chr12 24801618 24801656 -96455874 + AT_rich Low_complexity Low_complexity 1 38 0 5 774 1368 79 16 0 chr12 24801749 24801939 -96455591 - B2_Mm2 SINE B2 -2 193 1 5 774 546 265 17 0 chr12 24801940 24802057 -96455473 - RSINE1 SINE B4 -44 121 3 5 774 555 202 10 10 chr12 24802264 24802364 -96455166 - B1_Mur2 SINE Alu -40 109 10 5 774 474 217 128 117 chr12 24802374 24802562 -96454968 - B3A SINE B2 -1 197 8 5 774 510 264 101 34 chr12 24803231 24803439 -96454091 + ID_B1 SINE B4 3 224 0 5 774 1606 237 81 3 chr12 24804487 24804872 -96452658 - MTD LTR MaLR -3 416 2 5 774 285 336 35 0 chr12 24804872 24804988 -96452542 + RMER15 LTR ERVL 440 559 -16 5 774 1387 282 11 35 chr12 24805162 24805503 -96452027 - ORR1D2 LTR MaLR -4 366 31 5 774 1187 131 91 10 chr12 24805503 24805712 -96451818 + URR1A DNA MER1_type 1 226 0 5 774 1387 282 11 35 chr12 24805712 24805745 -96451785 - ORR1D2 LTR MaLR -340 30 1 5 774 270 283 0 61 chr12 24807968 24808066 -96449464 - MLT1K LTR MaLR 0 595 504 5 774 1116 207 9 0 chr12 24808988 24809201 -96448329 + B3 SINE B2 2 216 0 5 774 666 174 203 89 chr12 24809239 24809441 -96448089 - URR1B DNA MER1_type 0 225 1 5 774 1000 101 0 75 chr12 24810257 24810417 -96447113 + B1_Mus1 SINE Alu 1 148 0 5 774 180 0 0 0 chr12 24810417 24810437 -96447093 + (A)n Simple_repeat Simple_repeat 1 20 0 5 774 4362 23 0 0 chr12 24810917 24811399 -96446131 - LTRIS_Mm LTR ERV1 0 482 1 5 774 2064 149 67 24 chr12 24811476 24811848 -96445682 + MTC LTR MaLR 1 388 -33 5 774 283 288 53 26 chr12 24812388 24812502 -96445028 + L2c LINE L2 3218 3334 -53 5 774 1303 212 165 6 chr12 24812855 24813177 -96444353 + ORR1D1 LTR MaLR 1 373 -1 5 774 496 262 20 40 chr12 24813204 24813355 -96444175 + B1F SINE Alu 2 149 0 5 774 359 252 0 132 chr12 24813560 24813674 -96443856 + PB1D10 SINE Alu 19 117 0 5 774 648 155 12 170 chr12 24814111 24814234 -96443296 - URR1A DNA MER1_type -15 211 102 5 774 1103 76 7 14 chr12 24814234 24814380 -96443150 - B1_Mus2 SINE Alu -2 145 1 5 774 648 195 39 122 chr12 24814380 24814458 -96443072 - URR1A DNA MER1_type -125 101 3 5 774 2875 123 22 37 chr12 24814547 24815036 -96442494 + RLTR45 LTR ERVK 1 482 0 5 774 3731 121 26 30 chr12 24815036 24815609 -96441921 + RLTR45-int LTR ERVK 1 571 -6673 5 774 1119 49 0 40 chr12 24816375 24816525 -96441005 + RLTR45-int LTR ERVK 549 692 -6552 5 774 1304 214 84 4 chr12 24816907 24817205 -96440325 - MTD LTR MaLR -57 322 25 5 774 3678 229 48 132 chr12 24817218 24817693 -96439837 - MTD-int LTR MaLR -6 1252 849 5 774 1008 99 14 0 chr12 24817693 24817835 -96439695 - B1_Mm SINE Alu 0 147 4 5 774 3678 229 48 132 chr12 24817835 24818619 -96438911 - MTD-int LTR MaLR -410 848 99 5 774 731 239 183 5 chr12 24818687 24819020 -96438510 + MTD LTR MaLR 8 419 0 5 774 433 243 51 51 chr12 24819026 24819182 -96438348 + MTD-int LTR MaLR 1 156 -1102 5 774 544 309 40 7 chr12 24819328 24819478 -96438052 + RSINE1 SINE B4 11 165 0 5 774 879 151 7 0 chr12 24819597 24819743 -96437787 - B1_Mus1 SINE Alu -1 147 1 5 774 393 220 17 92 chr12 24819786 24819906 -96437624 + MT2B LTR ERVL 160 270 -331 5 774 817 204 0 14 chr12 24819802 24819941 -96437589 + B1_Mur1 SINE Alu 13 149 0 5 774 314 227 45 0 chr12 24819962 24820028 -96437502 + ID4_ SINE ID 9 77 -6 5 774 290 286 60 0 chr12 24820028 24820046 -96437484 + ID_B1 SINE B4 9 97 -127 5 774 1369 28 17 0 chr12 24820077 24820254 -96437276 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 774 1100 49 0 7 chr12 24820287 24820431 -96437099 + (GAAA)n Simple_repeat Simple_repeat 4 146 0 6 774 2184 103 33 3 chr12 24820773 24821075 -96436455 - RLTR10E LTR ERVK 0 311 1 6 774 18490 86 27 9 chr12 24821075 24824219 -96433311 - MMERVK10C-int LTR ERVK 0 7680 4453 6 774 249 54 25 86 chr12 24824233 24824314 -96433216 + T-rich Low_complexity Low_complexity 5 80 0 6 774 231 162 0 56 chr12 24824316 24824388 -96433142 + (TTATA)n Simple_repeat Simple_repeat 1 68 0 6 774 10866 108 3 14 chr12 24824401 24825951 -96431579 - MMERVK10C-int LTR ERVK -5642 1939 407 6 774 1335 157 0 9 chr12 24825980 24826198 -96431332 - MMERVK10C-int LTR ERVK -7140 441 226 6 774 236 182 0 43 chr12 24826198 24826244 -96431286 - RLTR27 LTR ERVK -35 274 231 6 774 527 146 34 0 chr12 24826245 24826334 -96431196 - MMERVK10C-int LTR ERVK -7489 92 1 6 774 2204 100 33 3 chr12 24826334 24826636 -96430894 - RLTR10E LTR ERVK 0 311 1 6 774 276 222 0 0 chr12 24826636 24826690 -96430840 + MLT1C LTR MaLR 52 105 -362 6 774 561 278 119 15 chr12 24826811 24827012 -96430518 - B4A SINE B4 -68 224 3 6 774 2252 96 9 6 chr12 24827151 24827477 -96430053 - MTB LTR MaLR 0 400 74 6 774 2172 211 116 45 chr12 24827483 24828299 -96429231 + RLTR13D6 LTR ERVK 10 893 0 6 774 385 151 81 14 chr12 24828299 24828373 -96429157 - MTB_Mm LTR MaLR -327 80 2 6 774 240 306 14 0 chr12 24828377 24828449 -96429081 + MLT1C LTR MaLR 333 405 -62 6 774 390 252 214 14 chr12 24828599 24828661 -96428869 - ID_B1 SINE B4 0 224 150 6 774 994 130 7 0 chr12 24828661 24828807 -96428723 + B1_Mus1 SINE Alu 1 147 -1 6 774 390 252 214 14 chr12 24828807 24828889 -96428641 - ID_B1 SINE B4 -75 149 51 6 774 955 282 10 0 chr12 24829041 24829247 -96428283 + MTEa LTR MaLR 18 225 -154 6 774 190 122 195 0 chr12 24829459 24829500 -96428030 + L3 LINE CR1 915 963 -3526 6 774 237 318 114 0 chr12 24829692 24829780 -96427750 + MIR SINE MIR 50 147 -61 6 774 3393 63 22 5 chr12 24830349 24830796 -96426734 + MURVY-LTR LTR ERV1 1 455 -64 6 774 572 258 72 138 chr12 24831300 24831705 -96425825 + RMER10A LTR ERVL 65 442 0 6 774 612 0 0 0 chr12 24831822 24831890 -96425640 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 774 572 234 119 14 chr12 24831894 24832037 -96425493 - RSINE1 SINE B4 -2 163 6 6 774 201 336 31 82 chr12 24832496 24832655 -96424875 + MIR3 SINE MIR 1 151 -57 6 774 833 217 106 24 chr12 24832678 24832874 -96424656 + MTD LTR MaLR 1 213 -206 6 774 837 255 66 0 chr12 24832874 24833070 -96424460 + B3 SINE B2 1 209 -7 6 774 849 257 39 19 chr12 24833110 24833316 -96424214 + MTD LTR MaLR 196 405 -14 6 774 4144 60 2 0 chr12 24833707 24834209 -96423321 - RLTR1C LTR ERV1 0 503 1 6 774 822 149 14 41 chr12 24834264 24834411 -96423119 + B1_Mus1 SINE Alu 6 148 0 6 774 316 269 9 88 chr12 24834312 24834426 -96423104 + RLTR25A LTR ERVK 523 627 -476 6 774 1330 73 5 45 chr12 24834462 24834663 -96422867 + B2_Mm2 SINE B2 3 195 0 6 774 1073 82 0 0 chr12 24834710 24834844 -96422686 + B1_Mus1 SINE Alu 2 135 -13 6 774 216 0 0 0 chr12 24834844 24834868 -96422662 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 774 441 0 0 0 chr12 24834868 24834916 -96422614 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 6 774 619 246 70 59 chr12 24834932 24835118 -96422412 + B3 SINE B2 2 189 -27 6 774 841 230 16 21 chr12 24835174 24835194 -96422336 - B3A SINE B2 -8 190 172 6 774 495 0 0 0 chr12 24835194 24835249 -96422281 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 774 841 230 16 21 chr12 24835249 24835419 -96422111 - B3A SINE B2 -27 171 1 6 774 531 266 14 0 chr12 24835436 24835579 -96421951 + L1MD LINE L1 5422 5566 -676 6 774 1362 181 180 142 chr12 24835580 24836025 -96421505 + MT2A LTR ERVL 1 462 -71 6 774 306 246 27 86 chr12 24835946 24836057 -96421473 + RMER21A LTR ERV1 471 660 -287 6 774 4130 148 66 7 chr12 24836130 24836282 -96421248 - RMER17D2 LTR ERVK -4 805 643 6 774 207 0 0 0 chr12 24836282 24836305 -96421225 + (TGG)n Simple_repeat Simple_repeat 2 24 0 6 774 4130 148 66 7 chr12 24836305 24836577 -96420953 - RMER17D2 LTR ERVK -167 642 367 6 774 1078 46 13 7 chr12 24836577 24836730 -96420800 + (GGAGA)n Simple_repeat Simple_repeat 3 156 0 6 774 4130 148 66 7 chr12 24836730 24837064 -96420466 - RMER17D2 LTR ERVK -443 366 2 6 774 417 274 177 0 chr12 24837071 24837184 -96420346 + RSINE1 SINE B4 4 136 -29 6 774 390 376 47 9 chr12 24837234 24837449 -96420081 + L1MD LINE L1 5597 5819 -540 6 774 972 109 7 0 chr12 24837599 24837736 -96419794 - B1_Mus1 SINE Alu -10 138 1 6 774 732 277 13 43 chr12 24837772 24838002 -96419528 - ID_B1 SINE B4 0 224 2 6 774 228 315 75 43 chr12 24838953 24839046 -96418484 + RMER21A LTR ERV1 259 354 -593 6 774 795 88 0 0 chr12 24840089 24840202 -96417328 + (TCTCCC)n Simple_repeat Simple_repeat 3 115 0 6 774 421 205 141 33 chr12 24840209 24840330 -96417200 - B1_Mus2 SINE Alu -13 134 1 6 774 758 234 88 5 chr12 24840353 24840546 -96416984 - B3 SINE B2 -5 211 3 6 774 229 222 18 18 chr12 24840839 24840894 -96416636 - MLT1F2 LTR MaLR -284 276 222 6 774 548 94 9 28 chr12 24841018 24841127 -96416403 + (TTTA)n Simple_repeat Simple_repeat 1 107 0 6 774 796 179 36 0 chr12 24841127 24841267 -96416263 - B1_Mus1 SINE Alu -1 147 3 6 774 376 153 0 23 chr12 24841608 24841695 -96415835 + C-rich Low_complexity Low_complexity 2 86 0 6 774 3428 52 28 21 chr12 24841997 24842430 -96415100 + RLTR10C LTR ERVK 1 436 0 6 774 1311 60 18 18 chr12 24842430 24842601 -96414929 + MMERVK10C-int LTR ERVK 1 171 -7410 6 774 239 315 0 0 chr12 24842601 24842655 -96414875 + RLTR27 LTR ERVK 222 275 -34 6 774 830 118 0 0 chr12 24842655 24842774 -96414756 + MMERVK10C-int LTR ERVK 225 343 -7238 6 774 1018 161 4 86 chr12 24842772 24843016 -96414514 + MMERVK10C-int LTR ERVK 729 952 -6629 6 774 638 182 108 129 chr12 24843106 24843346 -96414184 + MMERVK10C-int LTR ERVK 1062 1296 -6110 6 774 309 264 38 76 chr12 24843342 24843473 -96414057 + MMERVK10C-int LTR ERVK 694 819 -4587 6 774 305 175 0 0 chr12 24843478 24843535 -96413995 + MMERVK10C-int LTR ERVK 1089 1145 -4261 6 774 437 63 0 0 chr12 24843540 24843603 -96413927 + MMERVK10C-int LTR ERVK 1885 1947 -5634 6 774 8550 55 6 1 chr12 24843609 24844648 -96412882 + MMERVK10C-int LTR ERVK 2552 3595 -3986 6 774 36727 50 9 0 chr12 24844739 24850194 -96407336 + L1Md_F LINE L1 101 5589 -297 6 774 8584 34 0 0 chr12 24850194 24851190 -96406340 + L1Md_T LINE L1 5587 6582 0 6 774 33172 42 12 13 chr12 24851217 24855221 -96402309 + MMERVK10C-int LTR ERVK 3579 7581 0 6 774 3356 64 28 7 chr12 24855221 24855648 -96401882 + RLTR10C LTR ERVK 1 436 0 6 774 301 116 0 0 chr12 24855920 24855963 -96401567 + URR1B DNA MER1_type 183 225 0 6 774 594 306 43 32 chr12 24856255 24856535 -96400995 - B4A SINE B4 -8 284 2 6 774 259 325 54 68 chr12 24856604 24856713 -96400817 - L1MD2 LINE L1 -76 6283 6174 6 774 587 14 14 0 chr12 24856713 24856785 -96400745 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 774 259 325 54 68 chr12 24856785 24856880 -96400650 - L1MD2 LINE L1 -186 6173 6083 6 774 286 342 8 41 chr12 24857944 24858066 -96399464 + MIRb SINE MIR 2 119 -149 6 774 302 312 28 0 chr12 24858073 24858182 -96399348 - PB1D7 SINE Alu -6 114 3 6 774 249 299 102 8 chr12 24858379 24858507 -96399023 - L2c LINE L2 -223 3164 3025 6 774 759 228 24 12 chr12 24858574 24858738 -96398792 + B3A SINE B2 3 168 -30 6 774 650 224 16 42 chr12 24859305 24859496 -96398034 - B3 SINE B2 0 195 15 6 774 454 219 66 66 chr12 24859527 24859664 -96397866 - B1F1 SINE Alu 0 149 13 6 774 433 212 12 0 chr12 24859649 24859729 -96397801 - RSINE1 SINE B4 -32 133 53 6 774 365 273 0 0 chr12 24859734 24859822 -96397708 - PB1D10 SINE Alu 0 117 30 6 774 669 60 0 0 chr12 24859895 24859979 -96397551 + B2_Mm2 SINE B2 3 86 -109 6 774 1065 66 0 0 chr12 24859979 24860130 -96397400 + (GA)n Simple_repeat Simple_repeat 2 152 0 6 774 514 161 20 61 chr12 24860130 24860144 -96397386 + B3A SINE B2 89 97 -101 6 774 210 207 0 0 chr12 24861427 24861485 -96396045 + CT-rich Low_complexity Low_complexity 4 61 0 6 774 625 169 84 49 chr12 24861489 24861632 -96395898 - B1_Mur3 SINE Alu 0 149 2 6 774 1961 134 10 10 chr12 24861635 24861943 -96395587 + MTC LTR MaLR 108 415 -6 6 774 223 310 78 26 chr12 24861946 24862062 -96395468 - MIRb SINE MIR -124 144 23 6 774 644 244 16 0 chr12 24862898 24863025 -96394505 - RSINE1 SINE B4 -34 131 3 6 774 707 233 60 30 chr12 24863253 24863452 -96394078 - B4A SINE B4 -86 206 2 6 774 318 26 0 0 chr12 24863504 24863543 -96393987 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 774 728 192 8 0 chr12 24865511 24865636 -96391894 + ID_B1 SINE B4 92 217 -7 6 774 616 187 47 31 chr12 24865668 24865795 -96391735 + B1_Mur3 SINE Alu 9 137 -12 6 774 356 38 38 0 chr12 24865844 24865897 -96391633 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 6 774 612 204 76 19 chr12 24866077 24866234 -96391296 - ID_B1 SINE B4 -44 248 82 6 774 202 218 0 18 chr12 24866243 24866299 -96391231 + (TTTG)n Simple_repeat Simple_repeat 3 57 0 6 774 938 64 8 0 chr12 24866302 24866427 -96391103 - B1_Mm SINE Alu 0 147 22 6 774 588 196 54 250 chr12 24866473 24866657 -96390873 - B3 SINE B2 -2 214 48 6 774 293 281 183 81 chr12 24866768 24866842 -96390688 + ID_B1 SINE B4 20 224 0 6 774 454 243 0 9 chr12 24866842 24866954 -96390576 + PB1D9 SINE Alu 10 120 0 6 774 1153 67 20 0 chr12 24867685 24867991 -96389539 + (GGAA)n Simple_repeat Simple_repeat 1 312 0 6 774 492 18 0 0 chr12 24868983 24869040 -96388490 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 774 186 217 0 0 chr12 24871367 24871436 -96386094 + CT-rich Low_complexity Low_complexity 1 69 0 6 774 994 194 32 5 chr12 24871649 24871867 -96385663 + URR1B DNA MER1_type 1 224 -1 6 774 335 295 53 8 chr12 24871909 24872042 -96385488 + MER33 DNA MER1_type 186 324 0 6 774 552 272 38 12 chr12 24872512 24872672 -96384858 + RSINE1 SINE B4 1 164 -1 6 774 995 117 0 6 chr12 24873361 24873524 -96384006 + (TTCCC)n Simple_repeat Simple_repeat 4 165 0 6 774 225 159 0 0 chr12 24873527 24873571 -96383959 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 774 2335 93 0 58 chr12 24873582 24873925 -96383605 - ORR1A2 LTR MaLR -4 323 1 6 774 977 131 0 0 chr12 24874052 24874189 -96383341 - B1_Mur4 SINE Alu -13 137 1 6 774 391 308 65 16 chr12 24874210 24874395 -96383135 - B3A SINE B2 -3 195 2 6 774 653 273 14 72 chr12 24874412 24874621 -96382909 - B4A SINE B4 -72 220 24 6 774 841 230 23 37 chr12 24875525 24875742 -96381788 - ID_B1 SINE B4 -8 216 3 6 774 907 172 0 0 chr12 24875789 24875934 -96381596 - B1_Mur4 SINE Alu -5 145 1 6 774 276 240 147 0 chr12 24875940 24876015 -96381515 - PB1D10 SINE Alu -20 97 12 7 774 185 314 65 28 chr12 24876601 24876709 -96380821 + MIRc SINE MIR 51 162 -106 7 774 381 22 0 0 chr12 24877311 24877357 -96380173 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 774 37668 63 3 2 chr12 24878191 24884390 -96373140 - L1Md_F3 LINE L1 0 6584 218 7 774 414 0 0 0 chr12 24885823 24885869 -96371661 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 774 259 304 120 25 chr12 24886471 24886660 -96370870 - MIR SINE MIR -60 208 5 7 774 741 268 24 0 chr12 24887056 24887220 -96370310 - B3A SINE B2 -30 168 1 7 774 2136 138 38 0 chr12 24887230 24887570 -96369960 - L1_Mus3 LINE L1 -7 6631 6279 7 774 368 246 252 0 chr12 24887580 24887841 -96369689 - L1MC1 LINE L1 0 6333 6012 7 774 2489 71 68 0 chr12 24887866 24888154 -96369376 + IAPLTR4 LTR ERVK 1 288 -57 7 774 396 0 0 0 chr12 24888154 24888198 -96369332 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 774 2489 71 68 0 chr12 24888198 24888232 -96369298 + IAPLTR4 LTR ERVK 289 343 -2 7 774 659 173 15 23 chr12 24888237 24888367 -96369163 + IAPLTR3-int LTR ERVK 7 135 -6686 7 774 766 213 44 64 chr12 24888366 24888617 -96368913 + IAPLTR3-int LTR ERVK 821 1066 -5755 7 774 692 133 141 104 chr12 24888719 24889010 -96368520 + RLTR45-int LTR ERVK 2175 2307 -4937 7 774 474 195 89 0 chr12 24889131 24889254 -96368276 + MMERVK10C-int LTR ERVK 1721 1854 -5552 7 774 680 219 379 30 chr12 24889263 24889485 -96368045 + MMERVK10C-int LTR ERVK 2454 2753 -4653 7 774 3414 142 151 3 chr12 24889511 24890133 -96367397 + MMERVK10C-int LTR ERVK 3567 4280 -3126 7 774 507 184 10 0 chr12 24890129 24890232 -96367298 + MMETn-int LTR ERVK 2357 2460 -2384 7 774 818 102 28 49 chr12 24890262 24890406 -96367124 + MMERVK10C-int LTR ERVK 4530 4670 -2911 7 774 3362 88 2 16 chr12 24890666 24891115 -96366415 + MMERVK10C-int LTR ERVK 5203 5645 -1936 7 774 3484 86 0 4 chr12 24891103 24891559 -96365971 + MMERVK10C-int LTR ERVK 5761 6214 -1367 7 774 4399 213 9 14 chr12 24891542 24892421 -96365109 + IAPLTR3-int LTR ERVK 5927 6801 -20 7 774 2928 38 0 12 chr12 24892421 24892766 -96364764 + IAPLTR4 LTR ERVK 1 341 -4 7 774 466 212 32 4 chr12 24893235 24893489 -96364041 + (TG)n Simple_repeat Simple_repeat 1 261 0 7 774 469 182 22 28 chr12 24893509 24893690 -96363840 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 774 369 43 0 0 chr12 24893917 24893964 -96363566 + (TAA)n Simple_repeat Simple_repeat 2 48 0 7 774 220 204 26 26 chr12 24893997 24894148 -96363382 + A-rich Low_complexity Low_complexity 3 153 0 7 774 612 294 40 89 chr12 24894154 24894268 -96363262 - RLTR11A2 LTR ERVK -85 442 335 7 774 1218 61 0 0 chr12 24894268 24894415 -96363115 - B1_Mm SINE Alu 0 147 1 7 774 612 294 40 89 chr12 24894415 24894625 -96362905 - RLTR11A2 LTR ERVK -193 334 134 7 774 711 35 0 0 chr12 24894806 24894892 -96362638 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 7 774 289 198 8 8 chr12 24894908 24895030 -96362500 + (TA)n Simple_repeat Simple_repeat 1 122 0 7 774 330 248 19 0 chr12 24895031 24895136 -96362394 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 7 774 681 214 48 26 chr12 24895143 24895338 -96362192 + Lx2B LINE L1 6611 6800 -176 7 774 22 35 0 0 chr12 24895354 24895383 -96362147 + AT_rich Low_complexity Low_complexity 1 29 0 7 774 231 36 0 0 chr12 24895404 24895432 -96362098 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 774 234 0 0 0 chr12 24895433 24895459 -96362071 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 774 2227 241 71 14 chr12 24896069 24897073 -96360457 + L1_Mur2 LINE L1 1086 2082 -3798 7 774 591 177 18 0 chr12 24897290 24897403 -96360127 - B1_Mus1 SINE Alu -32 116 2 7 774 298 267 0 11 chr12 24897688 24897779 -96359751 - ORR1C2 LTR MaLR -2 382 293 7 774 300 281 32 28 chr12 24897929 24898128 -96359402 - MMSAT4 Satellite Satellite -23 199 1 7 774 413 299 75 44 chr12 24898071 24898365 -96359165 - MurSatRep1 Unknown Unknown 0 2137 1835 7 774 2913 90 2 5 chr12 24898381 24898783 -96358747 - L1_Mus1 LINE L1 -1 6566 6166 7 774 421 286 4 4 chr12 24898841 24899059 -96358471 - MMSAT4 Satellite Satellite -5 218 1 7 774 537 320 48 33 chr12 24898999 24899470 -96358060 - MurSatRep1 Unknown Unknown -1 2136 1747 7 774 409 276 36 36 chr12 24899424 24899647 -96357883 - MMSAT4 Satellite Satellite 0 223 1 7 774 552 313 45 33 chr12 24899587 24900547 -96356983 - MurSatRep1 Unknown Unknown 0 2137 1747 7 774 475 278 26 26 chr12 24900516 24900548 -96356982 - MMSAT4 Satellite Satellite 0 223 117 7 774 283 335 25 25 chr12 24900548 24900707 -96356823 - MurSatRep1 Unknown Unknown -126 2011 1853 7 774 475 278 26 26 chr12 24900707 24900739 -96356791 - MMSAT4 Satellite Satellite 0 116 1 7 774 8097 191 101 31 chr12 24900852 24901850 -96355680 - MurSatRep1 Unknown Unknown -2 2135 1127 7 774 1381 87 5 0 chr12 24901850 24902034 -96355496 + B2_Mm1a SINE B2 2 186 -7 7 774 8097 191 101 31 chr12 24902034 24902878 -96354652 - MurSatRep1 Unknown Unknown -1011 1126 177 7 774 331 323 65 0 chr12 24902878 24903002 -96354528 + B1_Mur2 SINE Alu 1 132 -17 7 774 8097 191 101 31 chr12 24903002 24903151 -96354379 - MurSatRep1 Unknown Unknown -1961 176 3 7 96 280 250 25 41 chr12 24903569 24903690 -96353840 + Lx4B LINE L1 6936 7054 -4 7 775 203 194 0 0 chr12 24903699 24903735 -96353795 + A-rich Low_complexity Low_complexity 1 36 0 7 775 1219 320 36 60 chr12 24903795 24904513 -96353017 - MTD-int LTR MaLR -108 1262 562 7 775 5947 234 18 8 chr12 24904523 24905930 -96351600 + Lx4B LINE L1 5637 7057 -1 7 775 906 116 0 45 chr12 24905934 24906088 -96351442 + B1_Mus2 SINE Alu 1 147 0 7 775 180 0 0 0 chr12 24906154 24906174 -96351356 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 775 368 371 34 13 chr12 24906236 24906471 -96351059 - MTD-int LTR MaLR -1107 263 24 7 775 327 85 0 0 chr12 24906490 24906537 -96350993 + (TTG)n Simple_repeat Simple_repeat 2 48 0 7 775 273 333 120 16 chr12 24906549 24906741 -96350789 - MTD LTR MaLR -16 403 192 7 775 1721 173 73 21 chr12 24906743 24906817 -96350713 + RLTR9D LTR ERVK 1 74 -329 7 775 3237 38 13 5 chr12 24906817 24907210 -96350320 - MTA_Mm LTR MaLR 0 396 1 7 775 1721 173 73 21 chr12 24907210 24907507 -96350023 + RLTR9D LTR ERVK 75 391 -12 7 775 354 360 52 16 chr12 24907515 24907707 -96349823 - MTD LTR MaLR -206 213 15 7 775 626 36 0 0 chr12 24909095 24909178 -96348352 - L1Md_T LINE L1 0 6582 6500 7 775 410 257 23 6 chr12 24909905 24910081 -96347449 + L1_Mur3 LINE L1 904 1082 -6646 7 775 454 287 161 9 chr12 24910408 24910862 -96346668 + L1_Mur3 LINE L1 1314 1836 -4044 7 775 521 101 34 0 chr12 24911427 24911516 -96346014 + RMER17D LTR ERVK 1 92 -797 7 775 335 323 121 0 chr12 24911563 24911761 -96345769 + MER63C DNA AcHobo 472 693 -237 7 775 226 229 0 62 chr12 24911728 24911793 -96345737 - MER63D DNA AcHobo -464 597 537 7 775 538 299 49 9 chr12 24911832 24912058 -96345472 + MER63C DNA AcHobo 691 925 -5 7 775 362 263 85 28 chr12 24912424 24912565 -96344965 + B1F SINE Alu 1 149 0 7 775 1163 107 0 6 chr12 24913198 24913377 -96344153 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 7 775 1079 97 7 0 chr12 24913397 24913541 -96343989 - B1_Mm SINE Alu 0 147 3 7 775 374 240 41 8 chr12 24914064 24914186 -96343344 + Lx3B LINE L1 6848 6973 0 7 775 615 14 0 0 chr12 24914428 24914500 -96343030 + (TTTA)n Simple_repeat Simple_repeat 3 74 0 7 775 1075 101 6 0 chr12 24914500 24914659 -96342871 - B2_Mm1a SINE B2 -33 160 1 7 775 245 194 153 0 chr12 24915154 24915226 -96342304 + MER5A1 DNA MER1_type 13 95 -71 7 775 485 322 9 61 chr12 24915458 24915670 -96341860 - ID_B1 SINE B4 -22 202 2 7 775 279 321 108 31 chr12 24915675 24915897 -96341633 - L2b LINE L2 -184 3242 3004 7 775 496 268 81 0 chr12 24916328 24916451 -96341079 - ETnERV2-int LTR ERVK -204 7202 7070 7 775 564 276 92 42 chr12 24916579 24916817 -96340713 + B4A SINE B4 5 254 -38 7 775 394 65 16 16 chr12 24916846 24916909 -96340621 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 775 273 79 0 0 chr12 24917456 24917494 -96340036 - MTC LTR MaLR -292 129 92 7 775 369 298 8 133 chr12 24917671 24917911 -96339619 + ID_B1 SINE B4 15 224 0 7 775 680 188 7 55 chr12 24917766 24917912 -96339618 + B1_Mus1 SINE Alu 10 148 0 7 775 1201 214 110 27 chr12 24917931 24918267 -96339263 - MTD LTR MaLR -40 379 16 7 775 713 51 10 0 chr12 24918405 24918503 -96339027 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 7 775 582 265 0 13 chr12 24918683 24918832 -96338698 + B1_Mm SINE Alu 1 147 0 7 775 356 183 0 0 chr12 24919273 24919333 -96338197 - B3 SINE B2 -87 129 70 7 775 377 89 0 0 chr12 24919586 24919642 -96337888 - RMER6D LTR ERVK -664 56 1 7 775 499 252 8 25 chr12 24920005 24920123 -96337407 + RSINE1 SINE B4 14 129 -36 7 775 2265 142 16 45 chr12 24921160 24921587 -96335943 + MTC LTR MaLR 1 415 -6 7 775 1400 99 0 5 chr12 24922215 24922408 -96335122 - B2_Mm2 SINE B2 -3 192 1 7 775 295 243 13 39 chr12 24922503 24922580 -96334950 - RSINE1 SINE B4 -40 125 51 7 775 999 157 0 0 chr12 24922668 24922815 -96334715 + B1_Mur1 SINE Alu 3 149 0 7 775 302 305 95 77 chr12 24923050 24923374 -96334156 + ORR1E LTR MaLR 1 370 0 7 775 645 47 0 0 chr12 24923512 24923597 -96333933 + (TG)n Simple_repeat Simple_repeat 1 85 0 7 775 336 237 13 13 chr12 24923806 24923883 -96333647 - ID2 SINE ID -5 78 2 7 775 207 146 0 0 chr12 24924366 24924407 -96333123 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 7 775 26 30 0 0 chr12 24924438 24924471 -96333059 + AT_rich Low_complexity Low_complexity 1 33 0 7 775 1311 95 16 0 chr12 24924566 24924756 -96332774 - B2_Mm2 SINE B2 -2 193 1 7 775 458 291 17 0 chr12 24924757 24924874 -96332656 - RSINE1 SINE B4 -44 121 3 7 775 465 245 10 10 chr12 24925081 24925184 -96332346 - B1_Mur2 SINE Alu -40 109 7 7 775 549 44 0 0 chr12 24925213 24925281 -96332249 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 775 338 243 52 20 chr12 24925328 24925426 -96332104 - B3 SINE B2 -84 114 8 7 775 445 287 31 31 chr12 24926114 24926276 -96331254 + ID_B1 SINE B4 60 221 -3 7 775 1198 249 36 3 chr12 24927315 24927617 -96329913 - MTD LTR MaLR -3 416 105 7 775 1015 146 23 0 chr12 24927694 24927865 -96329665 + RMER17D LTR ERVK 713 887 -2 7 775 244 344 36 58 chr12 24928446 24928671 -96328859 - MT2A LTR ERVL -231 302 83 7 775 198 121 0 96 chr12 24928721 24928794 -96328736 + (TTAGGG)n Simple_repeat Simple_repeat 5 70 0 7 775 250 262 121 16 chr12 24928866 24928990 -96328540 - Lx8 LINE L1 -2 7471 7335 7 775 386 165 13 0 chr12 24929009 24929088 -96328442 + CT-rich Low_complexity Low_complexity 3 82 0 7 775 252 270 133 11 chr12 24929203 24929293 -96328237 - Lx8 LINE L1 -395 7078 6978 7 775 771 240 66 24 chr12 24929605 24929818 -96327712 + ID_B1 SINE B4 1 222 -2 7 775 898 187 173 0 chr12 24930154 24930379 -96327151 - Lx9 LINE L1 0 7644 7381 7 775 1040 103 0 7 chr12 24930431 24930577 -96326953 + B1_Mm SINE Alu 1 145 -2 8 775 182 86 50 33 chr12 24930587 24930647 -96326883 + A-rich Low_complexity Low_complexity 6 66 0 8 775 476 274 142 6 chr12 24930923 24931092 -96326438 + B3A SINE B2 3 194 -4 8 775 300 306 31 0 chr12 24931676 24931774 -96325756 - MER5A1 DNA MER1_type 0 166 66 8 775 269 370 15 30 chr12 24931839 24931970 -96325560 + MER3 DNA MER1_type 3 131 -78 8 775 228 299 0 40 chr12 24933808 24933909 -96323621 + B4A SINE B4 1 97 -195 8 775 558 0 0 0 chr12 24933970 24934032 -96323498 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 775 31 26 0 0 chr12 24937364 24937402 -96320128 + GC_rich Low_complexity Low_complexity 1 38 0 8 775 405 154 0 0 chr12 24939305 24939396 -96318134 + (CA)n Simple_repeat Simple_repeat 2 92 0 8 775 312 75 0 86 chr12 24939404 24939462 -96318068 + HAL1-3A_ME LINE L1 1975 2027 -831 8 775 195 114 0 0 chr12 24939489 24939524 -96318006 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 775 399 202 0 0 chr12 24939567 24939696 -96317834 + (CA)n Simple_repeat Simple_repeat 2 130 0 8 775 344 247 12 0 chr12 24939753 24939834 -96317696 - ID2 SINE ID 0 83 2 8 775 756 197 0 14 chr12 24939953 24940097 -96317433 + B1_Mur3 SINE Alu 2 143 -6 8 775 404 348 34 17 chr12 24940118 24940352 -96317178 + MER46C DNA MER2_type 96 333 -5 8 775 1479 211 106 8 chr12 24940583 24940961 -96316569 + MTD LTR MaLR 5 419 0 8 775 250 26 0 49 chr12 24941356 24941397 -96316133 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 775 1041 75 0 8 chr12 24941402 24941536 -96315994 - B1_Mus2 SINE Alu -13 134 2 8 775 464 210 20 20 chr12 24941586 24941688 -96315842 + PB1D9 SINE Alu 2 103 -17 8 775 357 175 16 0 chr12 24942586 24942649 -96314881 - B3 SINE B2 -64 152 89 8 775 1047 110 0 0 chr12 24942680 24942825 -96314705 - B1_Mus1 SINE Alu -2 146 2 8 775 486 206 0 30 chr12 24942825 24942925 -96314605 - B3 SINE B2 -117 99 3 8 775 327 257 0 0 chr12 24942941 24943042 -96314488 + (CA)n Simple_repeat Simple_repeat 2 102 0 8 775 614 203 74 143 chr12 24943050 24943214 -96314316 - B3 SINE B2 -4 212 45 8 775 724 193 20 27 chr12 24943386 24943535 -96313995 - B1_Mur1 SINE Alu -1 148 1 8 775 1231 303 83 112 chr12 24943796 24944510 -96313020 + MER63C DNA AcHobo 233 925 -5 8 775 371 243 92 35 chr12 24944877 24945018 -96312512 + B1F SINE Alu 1 149 0 8 775 1172 93 6 0 chr12 24945641 24945813 -96311717 + (TTTC)n Simple_repeat Simple_repeat 1 173 0 8 775 1197 62 7 0 chr12 24945815 24945961 -96311569 - B1_Mm SINE Alu 0 147 1 8 775 415 238 32 16 chr12 24946483 24946607 -96310923 + Lx3B LINE L1 6848 6973 0 8 775 459 95 108 0 chr12 24946841 24946915 -96310615 - B2_Mm1a SINE B2 -9 184 103 8 775 513 0 0 0 chr12 24946985 24947042 -96310488 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 775 584 315 9 86 chr12 24947042 24947265 -96310265 - ID_B1 SINE B4 -16 208 2 8 775 245 321 137 26 chr12 24947270 24947497 -96310033 - L2b LINE L2 -184 3242 2991 8 775 541 252 81 0 chr12 24947922 24948045 -96309485 - ETnERV2-int LTR ERVK -204 7202 7070 8 775 638 289 92 42 chr12 24948173 24948411 -96309119 + B4A SINE B4 5 254 -38 8 775 240 35 0 0 chr12 24948440 24948469 -96309061 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 775 2430 70 35 3 chr12 24948822 24949137 -96308393 + IAPLTR2b LTR ERVK 1 325 -2 8 775 292 79 0 0 chr12 24949339 24949377 -96308153 - MTC LTR MaLR -292 129 92 8 775 200 297 0 0 chr12 24949411 24949475 -96308055 + (TA)n Simple_repeat Simple_repeat 2 65 0 8 775 1450 222 84 82 chr12 24949595 24949641 -96307889 - MTD LTR MaLR 0 419 377 8 775 683 189 33 53 chr12 24949641 24949792 -96307738 + B1_Mus1 SINE Alu 1 148 0 8 775 1450 222 84 82 chr12 24949792 24950148 -96307382 - MTD LTR MaLR -43 376 16 8 775 1338 130 23 10 chr12 24950273 24950569 -96306961 + (TAGA)n Simple_repeat Simple_repeat 1 299 0 8 775 623 275 0 20 chr12 24950676 24950828 -96306702 + B1_Mur3 SINE Alu 1 149 0 8 775 234 128 26 0 chr12 24951065 24951104 -96306426 - MLT1C LTR MaLR -279 188 149 8 775 324 217 0 0 chr12 24951266 24951326 -96306204 - B3 SINE B2 -87 129 70 8 775 2354 146 17 44 chr12 24951540 24951949 -96305581 + MTC LTR MaLR 18 415 -6 8 775 1542 72 0 5 chr12 24952577 24952772 -96304758 - B2_Mm2 SINE B2 -1 194 1 8 775 310 244 49 37 chr12 24952856 24952937 -96304593 - RSINE1 SINE B4 -33 132 51 8 775 1035 150 0 0 chr12 24953025 24953172 -96304358 + B1_Mur1 SINE Alu 3 149 0 8 775 399 291 214 50 chr12 24953407 24953725 -96303805 + ORR1E LTR MaLR 1 370 0 8 775 207 341 56 11 chr12 24953733 24953822 -96303708 + L2c LINE L2 3256 3348 -39 8 775 210 37 0 0 chr12 24953862 24953889 -96303641 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 775 315 267 46 46 chr12 24954065 24954176 -96303354 - ID2 SINE ID -39 113 2 8 775 223 171 0 0 chr12 24954665 24954706 -96302824 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 8 775 1836 239 43 2 chr12 24955530 24955929 -96301601 - MTD LTR MaLR -3 416 2 8 775 293 341 32 0 chr12 24955929 24956045 -96301485 + RMER15 LTR ERVL 440 559 -16 8 775 1561 262 8 32 chr12 24956219 24956560 -96300970 - ORR1D2 LTR MaLR -4 366 34 8 775 1158 153 81 9 chr12 24956560 24956771 -96300759 + URR1A DNA MER1_type 1 226 0 8 775 1561 262 8 32 chr12 24956771 24956804 -96300726 - ORR1D2 LTR MaLR -337 33 1 8 775 5500 128 32 58 chr12 24958200 24959204 -96298326 - RLTR13A3 LTR ERVK 0 978 1 8 775 244 305 3 60 chr12 24959991 24960124 -96297406 - MLT1K LTR MaLR 0 595 452 8 775 185 245 38 0 chr12 24960994 24961047 -96296483 + MIRc SINE MIR 85 139 -129 8 775 1008 222 14 0 chr12 24961208 24961420 -96296110 + B3 SINE B2 2 216 0 8 775 662 151 219 104 chr12 24961458 24961650 -96295880 - URR1B DNA MER1_type 0 225 12 8 775 576 0 0 0 chr12 24961964 24962028 -96295502 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 8 775 1120 72 0 0 chr12 24962028 24962166 -96295364 - B1_Mm SINE Alu -9 138 1 8 775 325 130 0 100 chr12 24962168 24962228 -96295302 - URR1A DNA MER1_type -114 112 59 8 775 222 271 0 0 chr12 24962301 24962419 -96295111 + (TCCA)n Simple_repeat Simple_repeat 3 120 0 8 775 827 245 15 29 chr12 24962705 24962911 -96294619 + B3 SINE B2 3 205 -11 8 775 1785 189 85 3 chr12 24963448 24963813 -96293717 - MTD LTR MaLR 0 419 25 8 775 4266 220 47 83 chr12 24963826 24964702 -96292828 - MTD-int LTR MaLR -6 1252 395 8 775 306 0 0 0 chr12 24964702 24964736 -96292794 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 775 1122 43 0 7 chr12 24964736 24964875 -96292655 - B1_Mus2 SINE Alu -9 138 1 8 775 4266 220 47 83 chr12 24964875 24965196 -96292334 - MTD-int LTR MaLR -864 394 99 8 775 1149 210 239 6 chr12 24965273 24965603 -96291927 + MTD LTR MaLR 13 419 0 8 775 525 203 51 51 chr12 24965609 24965765 -96291765 + MTD-int LTR MaLR 1 156 -1102 8 775 431 331 38 6 chr12 24965909 24966067 -96291463 + RSINE1 SINE B4 3 165 0 8 775 884 158 7 0 chr12 24966186 24966332 -96291198 - B1_Mus1 SINE Alu -1 147 1 8 775 375 252 16 87 chr12 24966375 24966501 -96291029 + MT2B LTR ERVL 160 276 -325 8 775 894 168 0 14 chr12 24966391 24966530 -96291000 + B1_Mur1 SINE Alu 13 149 0 8 775 248 311 40 0 chr12 24966543 24966617 -96290913 + ID4_ SINE ID 1 77 -6 8 775 224 348 54 0 chr12 24966617 24966635 -96290895 + ID_B1 SINE B4 1 97 -127 8 775 1313 76 0 8 chr12 24966665 24966908 -96290622 + (TAGA)n Simple_repeat Simple_repeat 1 240 0 8 775 438 139 0 0 chr12 24966893 24966979 -96290551 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 8 775 666 240 133 14 chr12 24967473 24967684 -96289846 - B4A SINE B4 -54 238 3 8 775 2581 99 36 5 chr12 24967820 24968207 -96289323 - MTB LTR MaLR 0 400 2 8 775 225 371 30 53 chr12 24968209 24968340 -96289190 + MLT1B LTR MaLR 254 381 -9 8 775 304 269 34 77 chr12 24968417 24968480 -96289050 - PB1D10 SINE Alu -1 116 52 8 775 979 144 0 0 chr12 24968480 24968626 -96288904 + B1_Mus2 SINE Alu 1 146 -1 8 775 304 269 34 77 chr12 24968626 24968679 -96288851 - PB1D10 SINE Alu -66 51 5 8 775 273 250 103 0 chr12 24968639 24968707 -96288823 - ID_B1 SINE B4 -99 125 51 8 775 1038 277 13 0 chr12 24968842 24969066 -96288464 + MTEa LTR MaLR 1 227 -152 8 775 181 125 200 0 chr12 24969278 24969318 -96288212 + L3 LINE CR1 916 963 -3526 8 775 204 304 54 0 chr12 24969544 24969600 -96287930 + MIRm SINE MIR 97 155 -121 8 775 189 107 0 0 chr12 24969989 24970017 -96287513 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 8 775 350 305 66 35 chr12 24970044 24970241 -96287289 - MLT1N2 LTR MaLR -5 557 355 8 775 528 261 219 55 chr12 24970688 24970881 -96286649 + RMER10A LTR ERVL 65 300 -142 8 775 941 49 8 0 chr12 24970881 24971004 -96286526 + (TC)n Simple_repeat Simple_repeat 1 124 0 8 775 528 261 219 55 chr12 24971004 24971135 -96286395 + RMER10A LTR ERVL 301 442 0 8 775 186 301 170 11 chr12 24971146 24971240 -96286290 + MER5B DNA MER1_type 4 112 -66 8 775 21 0 0 0 chr12 24971254 24971275 -96286255 + AT_rich Low_complexity Low_complexity 1 21 0 8 775 522 257 128 7 chr12 24971275 24971416 -96286114 - RSINE1 SINE B4 -2 163 6 8 775 832 182 41 25 chr12 24972042 24972237 -96285293 + MTD LTR MaLR 1 213 -208 8 775 895 252 27 41 chr12 24972237 24972418 -96285112 + B3 SINE B2 1 187 -29 8 775 423 0 0 0 chr12 24972418 24972465 -96285065 + (CATA)n Simple_repeat Simple_repeat 2 48 0 8 775 895 252 27 41 chr12 24972465 24972502 -96285028 + B3 SINE B2 188 216 0 8 775 967 230 40 20 chr12 24972497 24972716 -96284814 + MTD LTR MaLR 194 405 -14 8 775 808 151 0 67 chr12 24973088 24973237 -96284293 + B1_Mus1 SINE Alu 10 148 0 8 775 202 200 36 36 chr12 24973239 24973322 -96284208 + (CAAA)n Simple_repeat Simple_repeat 1 83 0 8 775 635 230 79 84 chr12 24973330 24973520 -96284010 + B3 SINE B2 2 190 -26 9 775 432 0 0 0 chr12 24973592 24973640 -96283890 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 775 740 224 18 12 chr12 24973657 24973824 -96283706 - B3A SINE B2 -30 168 1 9 775 432 261 82 0 chr12 24973841 24973975 -96283555 + L1MD LINE L1 5422 5566 -676 9 775 1403 196 166 142 chr12 24973976 24974427 -96283103 + MT2A LTR ERVL 1 462 -71 9 775 4407 137 43 23 chr12 24974528 24974991 -96282539 - RMER17D2 LTR ERVK 0 809 333 9 775 1175 0 0 7 chr12 24974991 24975127 -96282403 + (GGAGA)n Simple_repeat Simple_repeat 2 136 0 9 775 4407 137 43 23 chr12 24975127 24975456 -96282074 - RMER17D2 LTR ERVK -477 332 1 9 775 410 255 189 0 chr12 24975463 24975569 -96281961 + RSINE1 SINE B4 4 129 -36 9 775 529 349 37 0 chr12 24975626 24975841 -96281689 + L1MD LINE L1 5597 5819 -540 9 775 801 82 0 0 chr12 24975883 24975993 -96281537 + (GA)n Simple_repeat Simple_repeat 2 111 0 9 775 869 117 78 0 chr12 24976056 24976184 -96281346 - B1_Mus1 SINE Alu -10 138 1 9 775 770 265 13 44 chr12 24976220 24976449 -96281081 - ID_B1 SINE B4 0 224 3 9 775 567 0 0 0 chr12 24977648 24977711 -96279819 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 775 486 131 0 0 chr12 24977711 24977810 -96279720 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 9 775 201 147 0 0 chr12 24977964 24977998 -96279532 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 9 775 426 20 0 0 chr12 24977998 24978049 -96279481 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 9 775 490 188 157 33 chr12 24978059 24978180 -96279350 - B1_Mur2 SINE Alu -13 136 1 9 775 848 218 83 0 chr12 24978206 24978399 -96279131 - B3 SINE B2 -5 211 3 9 775 302 254 143 99 chr12 24978622 24978817 -96278713 - MLT1F1 LTR MaLR -226 334 141 9 775 694 81 0 18 chr12 24978882 24978995 -96278535 + (TTTA)n Simple_repeat Simple_repeat 2 112 0 9 775 657 215 31 0 chr12 24978995 24979125 -96278405 - B1_Mus1 SINE Alu -12 136 3 9 775 2456 57 0 28 chr12 24979295 24979621 -96277909 - L1Md_F3 LINE L1 -14 6570 6254 9 775 343 315 55 14 chr12 24979787 24979932 -96277598 - HAL1-3A_ME LINE L1 -416 2442 2292 9 775 464 97 0 74 chr12 24979939 24980061 -96277469 + C-rich Low_complexity Low_complexity 2 114 0 9 775 2337 35 0 0 chr12 24980876 24981160 -96276370 - LTRIS_Mm LTR ERV1 0 482 199 9 775 877 159 153 5 chr12 24981201 24981391 -96276139 - URR1A DNA MER1_type -6 220 3 9 775 804 255 70 74 chr12 24981391 24981688 -96275842 + MTE2a LTR MaLR 33 379 0 9 775 300 259 3 32 chr12 24982183 24982283 -96275247 + MT2A LTR ERVL 9 105 -496 9 775 237 319 89 34 chr12 24982531 24982677 -96274853 + RMER15 LTR ERVL 416 569 -6 9 775 183 320 39 26 chr12 24982678 24982755 -96274775 - MIRb SINE MIR -105 163 86 9 775 955 112 0 7 chr12 24983376 24983520 -96274010 + URR1B DNA MER1_type 83 225 0 9 775 667 295 45 48 chr12 24983802 24984094 -96273436 - B4A SINE B4 0 292 2 9 775 324 345 84 46 chr12 24984106 24984367 -96273163 - L1MD2 LINE L1 -5 6354 6084 9 775 636 192 75 102 chr12 24985289 24985475 -96272055 - B3 SINE B2 0 195 15 9 775 451 219 81 32 chr12 24985506 24985629 -96271901 - B1F1 SINE Alu 0 149 21 9 775 445 224 12 0 chr12 24985634 24985719 -96271811 - RSINE1 SINE B4 -38 127 42 9 775 340 243 0 0 chr12 24985713 24985787 -96271743 - PB1D10 SINE Alu 0 117 44 9 775 546 131 0 0 chr12 24985873 24985957 -96271573 + B2_Mm2 SINE B2 3 86 -109 9 775 387 0 0 0 chr12 24985957 24986000 -96271530 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 775 401 215 20 61 chr12 24986000 24986014 -96271516 + B3A SINE B2 89 97 -101 9 775 2616 117 5 20 chr12 24986077 24986486 -96271044 + RLTR9E LTR ERVK 1 403 -6 9 775 258 32 0 0 chr12 24987855 24987886 -96269644 + (TC)n Simple_repeat Simple_repeat 1 31 0 9 775 288 0 0 0 chr12 24987886 24987917 -96269613 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 775 318 345 39 78 chr12 24987917 24988046 -96269484 - RSINE1 SINE B4 -10 155 32 9 775 724 223 171 103 chr12 24988151 24988461 -96269069 - MTE2a LTR MaLR -14 365 35 9 775 1307 180 0 5 chr12 24988464 24988687 -96268843 - URR1B DNA MER1_type -3 222 1 9 775 940 152 14 0 chr12 24988718 24988863 -96268667 + B1_Mus1 SINE Alu 1 147 -1 9 775 842 206 99 11 chr12 24988892 24989083 -96268447 + B3 SINE B2 3 210 -6 9 775 36 0 0 0 chr12 24989092 24989128 -96268402 + AT_rich Low_complexity Low_complexity 1 36 0 9 775 261 167 83 0 chr12 24989132 24989180 -96268350 - MTE2a LTR MaLR -327 52 1 9 775 597 219 18 0 chr12 24990268 24990382 -96267148 + MTC LTR MaLR 1 116 -305 9 775 369 43 0 0 chr12 24990382 24990429 -96267101 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 775 180 0 0 0 chr12 24990476 24990496 -96267034 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 9 775 529 152 160 56 chr12 24990497 24990622 -96266908 - B1_Mur3 SINE Alu -10 139 2 9 775 2028 132 10 10 chr12 24990625 24990939 -96266591 + MTC LTR MaLR 108 421 0 9 775 234 303 81 18 chr12 24990944 24991055 -96266475 - MIRb SINE MIR -128 140 23 9 775 235 329 0 56 chr12 24991671 24991761 -96265769 + MER2B DNA MER2_type 8 92 -244 9 775 698 248 0 0 chr12 24991883 24992012 -96265518 - RSINE1 SINE B4 -34 131 3 9 775 715 219 65 40 chr12 24992240 24992440 -96265090 - B4A SINE B4 -86 206 2 9 775 208 314 126 42 chr12 24992461 24992604 -96264926 + MIRb SINE MIR 114 268 0 9 775 1359 147 9 18 chr12 24993263 24993491 -96264039 - URR1A DNA MER1_type 0 226 1 9 775 652 224 8 0 chr12 24994995 24995120 -96262410 + ID_B1 SINE B4 92 217 -7 9 775 596 214 44 37 chr12 24995153 24995289 -96262241 + B1_Mur3 SINE Alu 10 146 -3 9 775 708 77 0 0 chr12 24995329 24995433 -96262097 + (GA)n Simple_repeat Simple_repeat 1 104 0 9 775 2390 81 3 48 chr12 24995665 24996017 -96261513 - RLTR10D LTR ERVK -23 336 1 9 775 6927 68 0 0 chr12 24996017 24996860 -96260670 - IAP-d-int LTR ERVK 0 6542 5700 9 775 347 145 14 0 chr12 24997448 24997517 -96260013 + GA-rich Low_complexity Low_complexity 2 71 0 9 775 441 0 0 0 chr12 24998504 24998553 -96258977 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 775 1708 141 7 53 chr12 24999699 24999999 -96257531 + RLTR1D LTR ERV1 157 442 -163 9 775 457 217 64 8 chr12 25000000 25000155 -96257375 + RLTR1 LTR ERV1 444 611 -13 1 775 285 232 0 0 chr12 25001399 25001468 -96256062 + CT-rich Low_complexity Low_complexity 1 69 0 2 775 1112 187 27 5 chr12 25001681 25001901 -96255629 + URR1B DNA MER1_type 1 225 0 3 775 204 91 35 52 chr12 25002522 25002580 -96254950 + T-rich Low_complexity Low_complexity 2 58 0 4 775 538 279 25 19 chr12 25002602 25002763 -96254767 + RSINE1 SINE B4 1 162 -3 5 775 2389 74 0 80 chr12 25003482 25003833 -96253697 - ORR1A2 LTR MaLR -4 323 1 6 775 276 200 0 0 chr12 25003845 25003915 -96253615 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 775 813 182 0 0 chr12 25004005 25004142 -96253388 - B1_Mur4 SINE Alu -13 137 1 8 775 405 314 91 17 chr12 25004173 25004348 -96253182 - B3A SINE B2 -27 189 2 9 775 578 280 14 68 chr12 25004366 25004573 -96252957 - B4A SINE B4 -73 219 24 1 775 897 197 28 42 chr12 25005481 25005698 -96251832 - ID_B1 SINE B4 -8 216 3 1 775 863 152 7 20 chr12 25005726 25005874 -96251656 - B1_Mur4 SINE Alu -4 146 1 1 775 242 229 69 28 chr12 25005880 25005952 -96251578 - PB1D10 SINE Alu -20 97 23 1 775 4500 12 0 2 chr12 25009402 25009896 -96247634 + MT2_Mm LTR ERVL 1 493 0 1 775 4572 12 2 0 chr12 25009896 25010403 -96247127 + MERVL-int LTR ERVL 1 508 -4977 1 775 2500 24 3 0 chr12 25010397 25010685 -96246845 + MERVL-int LTR ERVL 5072 5360 -125 1 775 343 191 46 35 chr12 25010685 25010772 -96246758 + ORR1A3-int LTR MaLR 553 640 -1323 1 775 321 0 0 0 chr12 25010772 25010810 -96246720 + MERVL-int LTR ERVL 5448 5485 0 1 775 4500 14 0 2 chr12 25010810 25011304 -96246226 + MT2_Mm LTR ERVL 1 493 0 1 775 229 271 0 17 chr12 25011319 25011379 -96246151 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 775 297 0 0 0 chr12 25011379 25011412 -96246118 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 775 459 0 0 0 chr12 25011412 25011462 -96246068 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 775 703 271 24 0 chr12 25012612 25012782 -96244748 - B3A SINE B2 -23 175 2 1 775 1752 93 175 10 chr12 25012793 25013096 -96244434 - L1_Mus3 LINE L1 -7 6631 6279 2 775 363 224 267 0 chr12 25013106 25013222 -96244308 - L1MC1 LINE L1 0 6333 6187 2 775 244 248 44 44 chr12 25013736 25013850 -96243680 + L1M1 LINE L1 5786 5899 -401 2 775 305 200 26 17 chr12 25013859 25013976 -96243554 + (TATG)n Simple_repeat Simple_repeat 4 121 0 2 775 420 210 22 17 chr12 25013991 25014170 -96243360 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 775 200 91 37 75 chr12 25014431 25014538 -96242992 + (TAA)n Simple_repeat Simple_repeat 2 104 0 2 775 30 83 0 0 chr12 25014543 25014615 -96242915 + AT_rich Low_complexity Low_complexity 1 72 0 2 775 464 310 40 86 chr12 25014615 25014729 -96242801 - RLTR11A2 LTR ERVK -87 441 334 2 775 1148 82 0 0 chr12 25014729 25014876 -96242654 - B1_Mm SINE Alu 0 147 1 2 775 544 298 38 19 chr12 25014876 25015086 -96242444 - RLTR11A2 LTR ERVK -181 346 132 2 775 249 33 0 0 chr12 25015269 25015299 -96242231 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 2 775 381 194 0 32 chr12 25015304 25015490 -96242040 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 775 447 188 26 0 chr12 25015490 25015607 -96241923 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 3 775 597 220 58 16 chr12 25015666 25015854 -96241676 + Lx2B LINE L1 6625 6814 -162 3 775 24 0 0 0 chr12 25015854 25015878 -96241652 + AT_rich Low_complexity Low_complexity 1 24 0 3 775 531 0 0 0 chr12 25015905 25015964 -96241566 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 775 499 241 47 35 chr12 25016517 25016689 -96240841 + L1_Mur3 LINE L1 1048 1221 -6507 3 775 2218 246 58 28 chr12 25016674 25017672 -96239858 + L1_Mur3 LINE L1 1087 2127 -3753 3 775 17362 45 16 1 chr12 25017869 25020713 -96236817 - L1Md_F2 LINE L1 -4 6578 3695 3 775 258 81 0 0 chr12 25020710 25020747 -96236783 + L1M4 LINE L1 3708 3744 -2402 3 775 848 160 21 0 chr12 25020764 25020908 -96236622 - B1_Mus1 SINE Alu 0 148 2 3 775 295 263 0 0 chr12 25021201 25021277 -96236253 - ORR1C2 LTR MaLR -14 370 295 3 775 381 252 16 16 chr12 25021533 25021658 -96235872 - MMSAT4 Satellite Satellite 0 168 44 4 775 2868 104 2 2 chr12 25021678 25022083 -96235447 - L1_Mus1 LINE L1 0 6567 6163 4 775 375 265 46 27 chr12 25022134 25022351 -96235179 - MMSAT4 Satellite Satellite -1 221 1 4 775 495 309 61 42 chr12 25022294 25022811 -96234719 - MurSatRep1 Unknown Unknown 0 2137 1691 4 775 476 273 11 11 chr12 25022716 25022939 -96234591 - MMSAT4 Satellite Satellite 0 223 1 4 775 559 304 50 34 chr12 25022879 25023663 -96233867 - MurSatRep1 Unknown Unknown 0 2137 1691 4 775 3939 213 43 27 chr12 25023808 25024808 -96232722 - MurSatRep1 Unknown Unknown -2 2135 1120 4 775 981 154 0 6 chr12 25024808 25024966 -96232564 + B2_Mm2 SINE B2 2 159 -36 4 775 180 0 0 0 chr12 25024966 25024986 -96232544 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 4 775 981 154 0 6 chr12 25024986 25024997 -96232533 + B2_Mm2 SINE B2 160 170 -25 4 775 3967 180 30 24 chr12 25025000 25025837 -96231693 - MurSatRep1 Unknown Unknown -1012 1125 284 4 775 329 306 65 0 chr12 25025837 25025961 -96231569 + B1_Mur2 SINE Alu 1 132 -17 4 775 708 197 14 0 chr12 25025963 25026110 -96231420 - MurSatRep1 Unknown Unknown -1987 150 2 4 775 301 235 25 42 chr12 25026530 25026650 -96230880 + Lx4B LINE L1 6937 7054 -4 5 775 1188 327 40 62 chr12 25026750 25027466 -96230064 - ORR1D-int LTR MaLR -108 1262 562 5 775 5491 225 50 19 chr12 25027481 25028852 -96228678 + Lx4B LINE L1 5641 7054 -4 5 775 470 341 62 33 chr12 25028893 25029166 -96228364 - ORR1D-int LTR MaLR -1219 361 81 5 775 180 111 0 0 chr12 25029215 25029242 -96228288 + (TTG)n Simple_repeat Simple_repeat 1 27 0 5 775 226 312 35 18 chr12 25029280 25029394 -96228136 - MTD LTR MaLR -39 380 265 5 775 1836 165 68 23 chr12 25029450 25029524 -96228006 + RLTR9D LTR ERVK 1 74 -329 5 775 3280 43 5 5 chr12 25029524 25029920 -96227610 - MTA_Mm LTR MaLR 0 396 1 5 775 1836 165 68 23 chr12 25029920 25030229 -96227301 + RLTR9D LTR ERVK 75 401 -2 5 775 320 364 53 16 chr12 25030231 25030421 -96227109 - MTD LTR MaLR -208 211 15 5 775 2313 96 125 5 chr12 25030536 25030903 -96226627 + IAPLTR2a LTR ERVK 1 411 0 5 775 3527 89 35 34 chr12 25030904 25031722 -96225808 + IAPEz-int LTR ERVK 9 662 -5819 5 775 2674 79 0 3 chr12 25031722 25032065 -96225465 + IAPEz-int LTR ERVK 1359 1700 -4781 5 775 6847 50 4 11 chr12 25032058 25032893 -96224637 + IAPEz-int LTR ERVK 5651 6479 -2 5 775 2313 96 125 5 chr12 25032895 25033262 -96224268 + IAPLTR2a LTR ERVK 1 411 0 5 776 453 239 29 44 chr12 25035195 25035401 -96222129 + L1_Mur3 LINE L1 904 1106 -6622 5 776 603 273 160 15 chr12 25035698 25036155 -96221375 + L1_Mur3 LINE L1 1314 1836 -4044 5 776 5199 126 25 29 chr12 25036742 25037632 -96219898 + RMER17D LTR ERVK 2 887 -2 5 776 875 173 173 0 chr12 25038445 25038670 -96218860 - Lx9 LINE L1 0 7644 7381 6 776 988 97 20 27 chr12 25038722 25038870 -96218660 + B1_Mus2 SINE Alu 1 147 0 6 776 251 73 0 47 chr12 25038871 25038914 -96218616 + (CAAAAA)n Simple_repeat Simple_repeat 6 46 0 6 776 412 301 80 80 chr12 25039198 25039386 -96218144 + B3A SINE B2 3 190 -5 6 776 183 241 22 67 chr12 25039783 25039872 -96217658 + MER5B DNA MER1_type 32 116 -62 6 776 289 316 31 0 chr12 25039946 25040044 -96217486 - MER5A1 DNA MER1_type 0 166 66 6 776 234 386 15 30 chr12 25040109 25040240 -96217290 + MER3 DNA MER1_type 3 131 -78 6 776 491 206 217 42 chr12 25041746 25042009 -96215521 + RLTR6_Mm LTR ERV1 276 584 -70 6 776 295 182 29 29 chr12 25042234 25042302 -96215228 + IAPLTR3-int LTR ERVK 379 446 -6375 6 776 39969 180 17 5 chr12 25042287 25049607 -96207923 + IAPEY3-int LTR ERVK 246 7680 0 6 776 271 321 40 56 chr12 25049735 25049933 -96207597 + RLTR46 LTR ERVK 126 320 0 7 776 666 194 23 8 chr12 25049933 25050063 -96207467 - B1_Mur1 SINE Alu -17 132 1 7 776 877 308 83 118 chr12 25050328 25051039 -96206491 + MER63C DNA AcHobo 240 925 -5 7 776 597 28 0 0 chr12 25051214 25051285 -96206245 + (TTC)n Simple_repeat Simple_repeat 1 71 0 7 776 1044 82 0 0 chr12 25051285 25051420 -96206110 - B1_Mus2 SINE Alu -12 135 1 7 776 25 0 0 0 chr12 25051509 25051534 -96205996 + AT_rich Low_complexity Low_complexity 1 25 0 7 776 379 254 87 29 chr12 25051646 25051784 -96205746 + B1F SINE Alu 1 146 -3 7 776 222 37 0 0 chr12 25051784 25051811 -96205719 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 776 1149 42 7 34 chr12 25052450 25052599 -96204931 - B1_Mm SINE Alu 0 147 3 7 776 1187 195 232 6 chr12 25052759 25053099 -96204431 + MTD LTR MaLR 3 419 0 7 776 403 226 65 52 chr12 25053105 25053259 -96204271 + MTD-int LTR MaLR 1 156 -1102 7 776 494 319 38 6 chr12 25053404 25053562 -96203968 + RSINE1 SINE B4 3 165 0 8 776 939 123 7 0 chr12 25053680 25053826 -96203704 - B1_Mus1 SINE Alu -1 147 1 8 776 751 187 0 15 chr12 25053884 25054034 -96203496 + B1_Mur1 SINE Alu 2 149 0 8 776 306 257 40 0 chr12 25054047 25054121 -96203409 + ID4_ SINE ID 1 77 -6 8 776 513 32 0 0 chr12 25054168 25054231 -96203299 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 8 776 897 120 0 0 chr12 25054246 25054388 -96203142 + (GAAA)n Simple_repeat Simple_repeat 4 145 0 8 776 378 0 0 0 chr12 25054388 25054430 -96203100 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 8 776 1017 101 0 0 chr12 25054430 25054578 -96202952 + (GAAA)n Simple_repeat Simple_repeat 4 151 0 8 776 555 252 78 29 chr12 25055086 25055290 -96202240 - B4A SINE B4 -76 216 3 8 776 240 254 47 183 chr12 25055319 25055430 -96202100 + MLT1B LTR MaLR 165 253 -137 8 776 2799 87 20 5 chr12 25055430 25055823 -96201707 - MTB LTR MaLR -1 399 1 9 776 240 254 47 183 chr12 25055823 25055880 -96201650 + MLT1B LTR MaLR 254 310 -80 8 776 789 11 0 0 chr12 25055923 25056013 -96201517 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 9 776 763 211 8 0 chr12 25056080 25056208 -96201322 + ETnERV2-int LTR ERVK 7065 7193 -213 9 776 391 247 61 51 chr12 25056792 25056988 -96200542 + RLTR45-int LTR ERVK 169 366 -6878 9 776 1930 181 153 39 chr12 25057131 25057642 -96199888 + RMER16-int LTR ERVK 251 819 -4587 9 776 625 167 44 0 chr12 25057647 25057761 -96199769 + RMER16-int LTR ERVK 938 1056 -5081 9 776 1993 201 86 118 chr12 25057780 25058084 -96199446 + RLTR45-int LTR ERVK 3473 3758 -3486 9 776 441 54 0 0 chr12 25058084 25058140 -96199390 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 776 10182 139 43 14 chr12 25058140 25059829 -96197701 + ETnERV2-int LTR ERVK 2942 4679 -2727 9 776 3285 57 2 0 chr12 25059827 25060233 -96197297 + ETnERV2-int LTR ERVK 5356 5762 -1644 9 776 5531 144 95 125 chr12 25060221 25060560 -96196970 + RLTR45-int LTR ERVK 4672 5019 -2225 9 776 1490 45 11 0 chr12 25060560 25060738 -96196792 + B2_Mm2 SINE B2 2 181 -14 9 776 5531 144 95 125 chr12 25060738 25061120 -96196410 + RLTR45-int LTR ERVK 5020 5402 -1842 9 776 232 148 35 53 chr12 25061120 25061177 -96196353 - Lx8 LINE L1 -376 7097 7042 9 776 5531 144 95 125 chr12 25061177 25061842 -96195688 + RLTR45-int LTR ERVK 5403 6070 -1174 9 776 880 249 64 13 chr12 25061844 25062182 -96195348 + RLTR45-int LTR ERVK 7506 7828 -389 9 776 4691 149 14 4 chr12 25062216 25062909 -96194621 + ETnERV2-int LTR ERVK 6494 7193 -213 1 776 278 262 35 78 chr12 25063335 25063397 -96194133 - PB1D10 SINE Alu -2 115 52 1 776 977 130 7 0 chr12 25063397 25063543 -96193987 + B1_Mus1 SINE Alu 1 147 -1 1 776 278 262 35 78 chr12 25063543 25063596 -96193934 - PB1D10 SINE Alu -66 51 5 1 776 270 239 104 0 chr12 25063556 25063623 -96193907 - ID_B1 SINE B4 -99 125 52 1 776 973 266 13 0 chr12 25063752 25063978 -96193552 + MTE2b LTR MaLR 1 229 -150 1 776 318 286 35 21 chr12 25064902 25065045 -96192485 - MLT1N2 LTR MaLR -5 557 413 1 776 345 267 219 52 chr12 25065566 25065758 -96191772 + RMER10A LTR ERVL 65 302 -140 1 776 772 39 19 0 chr12 25065758 25065862 -96191668 + (TC)n Simple_repeat Simple_repeat 1 106 0 1 776 345 267 219 52 chr12 25065862 25065993 -96191537 + RMER10A LTR ERVL 303 442 0 1 776 678 193 7 0 chr12 25066048 25066183 -96191347 - B3A SINE B2 -62 136 1 1 776 497 264 42 0 chr12 25066197 25066341 -96191189 + L1MD LINE L1 5417 5566 -676 1 776 578 159 71 0 chr12 25066342 25066455 -96191075 + MT2A LTR ERVL 1 121 -412 1 776 180 0 0 0 chr12 25068051 25068071 -96189459 + (CAG)n Simple_repeat Simple_repeat 3 22 0 1 776 192 217 0 0 chr12 25068133 25068179 -96189351 + (CGG)n Simple_repeat Simple_repeat 3 48 0 1 776 823 218 117 22 chr12 25068294 25068613 -96188917 + MT2A LTR ERVL 92 554 -47 1 776 4015 129 57 9 chr12 25068690 25068842 -96188688 - RMER17D2 LTR ERVK -4 805 649 1 776 243 0 0 0 chr12 25068842 25068869 -96188661 + (TGG)n Simple_repeat Simple_repeat 2 28 0 1 776 4015 129 57 9 chr12 25068869 25069154 -96188376 - RMER17D2 LTR ERVK -161 648 336 1 776 810 0 0 0 chr12 25069154 25069244 -96188286 + (GGAGA)n Simple_repeat Simple_repeat 2 91 0 1 776 4015 129 57 9 chr12 25069244 25069573 -96187957 - RMER17D2 LTR ERVK -474 335 2 1 776 337 265 196 0 chr12 25069580 25069682 -96187848 + RSINE1 SINE B4 4 125 -40 1 776 1201 61 0 0 chr12 25069737 25069884 -96187646 + B1_Mm SINE Alu 1 147 0 1 776 554 343 32 0 chr12 25069906 25070122 -96187408 + L1MD LINE L1 5597 5819 -540 1 776 556 120 20 0 chr12 25070165 25070265 -96187265 + (GA)n Simple_repeat Simple_repeat 2 103 0 1 776 1026 103 0 0 chr12 25070341 25070477 -96187053 - B1_Mus1 SINE Alu -12 136 1 1 776 279 0 0 0 chr12 25070500 25070531 -96186999 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 776 384 259 16 79 chr12 25070535 25070661 -96186869 - ID_B1 SINE B4 -14 210 93 1 776 1389 183 124 15 chr12 25070873 25071212 -96186318 + RLTR1 LTR ERV1 249 624 0 1 776 322 292 10 0 chr12 25071212 25071306 -96186224 - ID_B1 SINE B4 -128 96 2 1 776 310 55 73 0 chr12 25073596 25073651 -96183879 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 1 776 789 142 19 0 chr12 25073793 25073948 -96183582 + CT-rich Low_complexity Low_complexity 1 158 0 1 776 444 214 157 33 chr12 25073953 25074074 -96183456 - B1_Mur2 SINE Alu -13 136 1 1 776 708 255 88 0 chr12 25074098 25074290 -96183240 - B3 SINE B2 -5 211 3 1 776 686 130 104 30 chr12 25074771 25074783 -96182747 - B1_Mus1 SINE Alu -1 147 139 1 776 765 85 0 0 chr12 25074783 25074889 -96182641 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 1 776 686 130 104 30 chr12 25074889 25075011 -96182519 - B1_Mus1 SINE Alu -10 138 3 1 776 330 26 0 0 chr12 25075045 25075084 -96182446 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1 776 301 22 21 21 chr12 25075084 25075130 -96182400 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 776 1059 87 0 0 chr12 25075130 25075268 -96182262 - B1_Mm SINE Alu -9 138 1 1 776 442 129 0 23 chr12 25075587 25075674 -96181856 + C-rich Low_complexity Low_complexity 2 86 0 1 776 238 281 50 77 chr12 25076530 25076711 -96180819 + CYRA11_Mm Unknown Y-chromosome 141 316 -301 1 776 516 199 29 22 chr12 25076573 25076712 -96180818 - URR1A DNA MER1_type -6 220 81 1 776 766 247 196 26 chr12 25076743 25077039 -96180491 + MTE2b LTR MaLR 34 379 0 1 776 360 192 0 27 chr12 25077529 25077604 -96179926 + MT2A LTR ERVL 3 75 -458 1 776 3017 76 13 0 chr12 25078444 25078838 -96178692 - MTB LTR MaLR 0 400 2 1 776 232 312 65 65 chr12 25079190 25079344 -96178186 - MIRb SINE MIR -30 238 85 1 776 2054 174 91 0 chr12 25079661 25080047 -96177483 - MTC LTR MaLR 0 421 1 1 776 2055 126 44 41 chr12 25080234 25080598 -96176932 + IAPLTR1_Mm LTR ERVK 1 365 -2 1 776 58052 17 6 10 chr12 25080598 25087101 -96170429 + IAPEz-int LTR ERVK 6 6481 0 1 776 2041 114 6 85 chr12 25087101 25087465 -96170065 + IAPLTR1_Mm LTR ERVK 1 335 -2 1 776 2963 186 131 12 chr12 25089839 25090097 -96167433 + RMER19A LTR ERVK 1 292 -445 1 776 3060 88 5 0 chr12 25090097 25090495 -96167035 - MTB LTR MaLR 0 400 1 1 776 2963 186 131 12 chr12 25090495 25090895 -96166635 + RMER19A LTR ERVK 293 737 0 1 776 518 295 113 40 chr12 25090900 25091404 -96166126 + L1MC3 LINE L1 6875 7415 -370 1 776 897 186 90 5 chr12 25091569 25091758 -96165772 + B3 SINE B2 4 208 -8 1 776 1071 116 0 0 chr12 25091782 25091928 -96165602 + B1_Mus1 SINE Alu 3 148 0 1 776 192 40 0 0 chr12 25091929 25091954 -96165576 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 776 1604 98 12 31 chr12 25092684 25092938 -96164592 + L1_Mm LINE L1 3548 3796 -2087 1 776 697 73 0 0 chr12 25092938 25093034 -96164496 - B1_Mm SINE Alu -2 145 50 1 776 305 85 0 0 chr12 25093034 25093081 -96164449 + B1_Mus2 SINE Alu 2 48 -99 1 776 230 56 28 0 chr12 25093718 25093754 -96163776 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 1 776 503 267 74 14 chr12 25094021 25094169 -96163361 + B4 SINE B4 93 249 -43 1 776 369 0 0 0 chr12 25094177 25094218 -96163312 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 776 225 309 44 0 chr12 25094246 25094314 -96163216 + RSINE1 SINE B4 93 163 -2 1 776 33 0 0 0 chr12 25094320 25094353 -96163177 + AT_rich Low_complexity Low_complexity 1 33 0 1 776 288 0 0 0 chr12 25094357 25094389 -96163141 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 776 993 243 5 0 chr12 25094403 25094617 -96162913 + B3 SINE B2 1 215 -1 1 776 7312 111 12 7 chr12 25094688 25096110 -96161420 - L1_Mus3 LINE L1 0 6638 5209 1 776 28 29 0 0 chr12 25096991 25097026 -96160504 + AT_rich Low_complexity Low_complexity 1 35 0 1 776 654 299 0 6 chr12 25097030 25097195 -96160335 + RSINE1 SINE B4 2 165 0 1 776 474 294 0 9 chr12 25097354 25097464 -96160066 + RSINE1 SINE B4 7 115 -50 1 776 213 39 0 0 chr12 25097488 25097514 -96160016 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 776 1982 175 61 0 chr12 25097707 25098067 -96159463 - RLTR14 LTR ERV1 0 382 1 1 776 410 246 103 40 chr12 25098331 25098505 -96159025 + Charlie21a DNA MER1_type 223 407 -806 1 776 222 37 0 0 chr12 25099087 25099114 -96158416 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 776 621 0 0 0 chr12 25099114 25099182 -96158348 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 776 874 165 195 11 chr12 25099481 25099671 -96157859 + URR1B DNA MER1_type 1 225 0 1 776 938 171 193 0 chr12 25099905 25100086 -96157444 - B3 SINE B2 0 216 1 1 776 501 219 0 0 chr12 25100351 25100447 -96157083 - ID_B1 SINE B4 -1 223 128 1 776 324 309 10 0 chr12 25100503 25100600 -96156930 - ID_B1 SINE B4 -17 207 110 1 776 272 314 97 10 chr12 25100689 25100792 -96156738 + B1F1 SINE Alu 10 121 -28 1 776 528 45 0 0 chr12 25100806 25100873 -96156657 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 776 279 287 84 22 chr12 25100930 25101108 -96156422 + L1M5 LINE L1 4385 4573 -1573 1 776 453 185 11 11 chr12 25101232 25101325 -96156205 + B1_Mur2 SINE Alu 57 149 0 1 776 962 256 57 79 chr12 25101430 25101799 -96155731 + MTE2a LTR MaLR 17 377 -2 1 776 747 191 29 29 chr12 25101889 25102029 -96155501 + B3 SINE B2 1 140 -76 1 776 14315 56 4 0 chr12 25102029 25104101 -96153429 - L1Md_F2 LINE L1 -417 6165 4087 1 776 11053 73 3 1 chr12 25104091 25106384 -96151146 - L1Md_F2 LINE L1 -3202 2681 383 1 776 7247 106 19 23 chr12 25106389 25107500 -96150030 - L1_Mm LINE L1 -1813 4070 2965 1 776 828 302 13 121 chr12 25107787 25108100 -96149430 - B4 SINE B4 -12 280 2 1 776 554 278 69 7 chr12 25108549 25108812 -96148718 + L1MA4A LINE L1 5642 5928 -375 1 776 1997 127 0 27 chr12 25109186 25109486 -96148044 - L1_Mm LINE L1 -60 5823 5532 1 776 2871 34 0 0 chr12 25109489 25109815 -96147715 + IAPLTR3 LTR ERVK 1 326 0 1 776 11698 45 42 1 chr12 25109815 25111229 -96146301 + IAPLTR3-int LTR ERVK 1 1472 -5349 1 776 13516 19 3 1 chr12 25111227 25112721 -96144809 + IAPLTR3-int LTR ERVK 5304 6801 -20 1 776 2827 25 12 0 chr12 25112721 25113043 -96144487 + IAPLTR3 LTR ERVK 1 326 0 1 776 9148 96 5 10 chr12 25113046 25114348 -96143182 - L1_Mm LINE L1 -353 5530 4235 1 776 446 221 103 73 chr12 25114359 25114463 -96143067 - L1MEg LINE L1 -1449 4697 4594 1 776 2094 177 106 40 chr12 25114463 25114963 -96142567 - RMER16 LTR ERVK 0 533 1 1 776 446 221 103 73 chr12 25114963 25115092 -96142438 - L1MEg LINE L1 -1553 4593 4457 1 776 555 284 68 16 chr12 25115565 25115847 -96141683 - L1MA4 LINE L1 -375 5928 5636 1 776 250 203 50 17 chr12 25115957 25116017 -96141513 - L1MEg LINE L1 -4714 1528 1467 1 776 4680 70 2 15 chr12 25116071 25116664 -96140866 + LTRIS_Mus LTR ERV1 1 585 -2 1 776 5648 38 4 84 chr12 25116665 25117438 -96140092 - L1Md_F3 LINE L1 0 6584 5874 1 776 1179 62 0 7 chr12 25117514 25117660 -96139870 - B1_Mm SINE Alu -1 146 2 1 776 942 287 40 32 chr12 25117810 25118028 -96139502 + B4 SINE B4 2 213 -79 1 776 297 0 0 0 chr12 25118028 25118061 -96139469 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 1 776 942 287 40 32 chr12 25118061 25118119 -96139411 + B4 SINE B4 214 279 -13 1 776 478 290 22 7 chr12 25118413 25118552 -96138978 - B1F SINE Alu -7 142 2 1 776 378 302 19 51 chr12 25118552 25118570 -96138960 - ID_B1 SINE B4 -7 217 66 1 776 342 340 16 0 chr12 25118670 25118837 -96138693 + MTEa LTR MaLR 20 193 -186 1 776 227 278 13 65 chr12 25118997 25119074 -96138456 + ID4 SINE ID 2 74 -9 1 776 930 176 22 11 chr12 25119011 25119189 -96138341 + B3 SINE B2 13 192 -24 1 776 318 216 143 2 chr12 25119209 25119347 -96138183 - L1MA9 LINE L1 -18 6273 6118 1 776 796 200 14 0 chr12 25119485 25119630 -96137900 - B1_Mur4 SINE Alu 0 150 4 1 776 1136 199 23 19 chr12 25119658 25119873 -96137657 - B3 SINE B2 0 216 1 1 776 189 121 0 0 chr12 25119969 25120002 -96137528 + (T)n Simple_repeat Simple_repeat 1 33 0 1 776 40920 23 1 6 chr12 25120029 25126230 -96131300 - L1Md_T LINE L1 0 6582 416 1 776 890 266 58 80 chr12 25126230 25126594 -96130936 - MTE2a LTR MaLR -7 372 17 2 776 469 209 65 19 chr12 25126698 25126805 -96130725 - B1_Mur2 SINE Alu 0 149 38 2 776 301 339 62 15 chr12 25126952 25127147 -96130383 - L1MC LINE L1 -1573 4573 4370 2 776 192 40 0 0 chr12 25127189 25127214 -96130316 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 776 350 280 171 31 chr12 25127214 25127343 -96130187 - B1F1 SINE Alu -1 148 2 2 776 432 277 25 0 chr12 25127421 25127540 -96129990 + ID_B1 SINE B4 93 214 -10 2 776 591 273 48 0 chr12 25127526 25127691 -96129839 + ID_B1 SINE B4 51 223 -1 2 776 3266 161 21 60 chr12 25127857 25128487 -96129043 - RLTR1D LTR ERV1 0 605 1 2 776 350 209 28 21 chr12 25128578 25128720 -96128810 + GA-rich Low_complexity Low_complexity 5 147 0 2 776 930 147 217 17 chr12 25128841 25129021 -96128509 + B3 SINE B2 1 216 0 2 776 1004 59 0 0 chr12 25129048 25129183 -96128347 + B1_Mm SINE Alu 10 144 -3 2 776 309 51 0 0 chr12 25129183 25129222 -96128308 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 776 287 318 70 23 chr12 25129234 25129363 -96128167 - MER65D LTR ERV1 -148 325 191 2 776 820 169 183 41 chr12 25129456 25129653 -96127877 - URR1B DNA MER1_type 0 225 1 2 776 1581 73 0 0 chr12 25129812 25130004 -96127526 - B2_Mm1a SINE B2 0 193 2 2 776 916 47 0 23 chr12 25130168 25130300 -96127230 + (TCTCCC)n Simple_repeat Simple_repeat 5 133 0 2 776 369 240 131 44 chr12 25130798 25130981 -96126549 - Charlie21a DNA MER1_type -805 408 210 2 776 1988 159 84 8 chr12 25131221 25131368 -96126162 + RLTR14 LTR ERV1 1 160 -222 2 776 329 40 40 0 chr12 25131368 25131418 -96126112 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 2 776 1988 159 84 8 chr12 25131418 25131625 -96125905 + RLTR14 LTR ERV1 161 382 0 2 776 525 294 6 79 chr12 25131798 25131975 -96125555 - RSINE1 SINE B4 0 165 2 2 776 339 85 0 0 chr12 25132113 25132160 -96125370 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 776 552 303 0 7 chr12 25132164 25132307 -96125223 - RSINE1 SINE B4 -22 143 2 2 776 21 57 0 0 chr12 25132311 25132346 -96125184 + AT_rich Low_complexity Low_complexity 1 35 0 2 776 7405 82 36 9 chr12 25132474 25133081 -96124449 - L1_Mus3 LINE L1 0 6638 6004 2 776 2932 49 0 0 chr12 25133081 25133427 -96124103 - ORR1A0 LTR MaLR 0 346 1 2 776 9840 95 21 3 chr12 25133427 25134933 -96122597 - L1_Mus3 LINE L1 -635 6003 4478 2 776 1595 192 158 3 chr12 25135678 25136039 -96121491 + MTD LTR MaLR 3 419 0 2 776 22 0 0 0 chr12 25136332 25136354 -96121176 + AT_rich Low_complexity Low_complexity 1 22 0 2 776 1132 178 39 0 chr12 25136423 25136631 -96120899 - B3 SINE B2 0 216 1 2 776 25 51 0 0 chr12 25136652 25136691 -96120839 + AT_rich Low_complexity Low_complexity 1 39 0 2 776 304 358 72 40 chr12 25136702 25136827 -96120703 - RSINE1 SINE B4 -2 163 35 2 776 495 0 0 0 chr12 25136839 25136894 -96120636 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 776 413 257 97 0 chr12 25136895 25137008 -96120522 - B4 SINE B4 -35 257 134 2 776 3308 43 5 0 chr12 25141086 25141480 -96116050 + MTA_Mm LTR MaLR 1 396 0 2 776 1049 61 6 75 chr12 25142332 25142491 -96115039 + B1_Mus1 SINE Alu 1 148 0 2 776 183 80 0 0 chr12 25142491 25142516 -96115014 + (A)n Simple_repeat Simple_repeat 1 25 0 2 776 1114 96 0 0 chr12 25143558 25143704 -96113826 + B1_Mus1 SINE Alu 2 147 -1 2 776 915 287 16 4 chr12 25144618 25144863 -96112667 + B4 SINE B4 43 290 -2 2 776 1081 60 0 0 chr12 25144974 25145108 -96112422 + B1_Mus1 SINE Alu 2 135 -13 2 776 662 256 31 0 chr12 25145502 25145631 -96111899 - ETnERV2-int LTR ERVK -204 7202 7070 2 776 1287 99 33 0 chr12 25145705 25145886 -96111644 - B2_Mm2 SINE B2 -8 187 1 2 776 774 227 0 0 chr12 25145919 25146069 -96111461 - B1_Mur4 SINE Alu 0 150 1 2 776 708 219 64 141 chr12 25146077 25146311 -96111219 - B3 SINE B2 0 216 1 2 776 184 167 42 0 chr12 25146531 25146579 -96110951 + (TATG)n Simple_repeat Simple_repeat 4 53 0 2 776 770 331 49 7 chr12 25146579 25146865 -96110665 + MER115 DNA Tip100 375 672 -21 2 776 214 260 240 0 chr12 25147388 25147488 -96110042 + MIRb SINE MIR 38 161 -107 2 776 214 152 17 17 chr12 25147853 25147913 -96109617 + GA-rich Low_complexity Low_complexity 1 60 0 2 776 277 272 219 0 chr12 25149431 25149545 -96107985 + ID_B1 SINE B4 86 224 0 2 776 187 56 54 27 chr12 25149549 25149586 -96107944 + (GGAAA)n Simple_repeat Simple_repeat 2 39 0 2 776 562 261 21 0 chr12 25150984 25151126 -96106404 + B1F2 SINE Alu 1 145 -4 2 776 306 269 32 32 chr12 25151141 25151264 -96106266 + MLT1A LTR MaLR 234 356 -18 2 776 236 279 153 0 chr12 25151261 25151372 -96106158 + MLT1C LTR MaLR 63 190 -277 2 776 244 286 42 0 chr12 25151451 25151545 -96105985 + MLT2C2 LTR ERVL 413 511 -49 2 776 240 35 0 0 chr12 25151731 25151760 -96105770 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 776 235 258 65 0 chr12 25151766 25151828 -96105702 - B3A SINE B2 -49 149 84 2 776 564 80 13 0 chr12 25152083 25152158 -96105372 + tRNA-Lys-AAG tRNA tRNA 1 76 0 2 776 267 291 147 51 chr12 25152632 25152925 -96104605 + MLT1C LTR MaLR 142 462 -5 2 776 1985 129 110 0 chr12 25153591 25153954 -96103576 - MTC LTR MaLR -17 404 2 2 776 1528 130 268 21 chr12 25154316 25154652 -96102878 - RLTR20C LTR ERVK -115 419 1 2 776 663 67 0 0 chr12 25155057 25155146 -96102384 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 776 890 271 76 25 chr12 25155241 25155517 -96102013 - B4A SINE B4 -2 290 1 2 776 467 244 55 0 chr12 25156244 25156371 -96101159 + B1F SINE Alu 5 138 -11 2 776 780 160 1 22 chr12 25157178 25157331 -96100199 - B1_Mus2 SINE Alu 0 147 1 2 776 278 89 54 0 chr12 25157350 25157406 -96100124 - B2_Mm2 SINE B2 0 195 137 2 776 225 302 0 0 chr12 25158116 25158169 -96099361 - B1F1 SINE Alu -93 56 4 2 776 348 182 15 0 chr12 25158203 25158269 -96099261 + L1ME3 LINE L1 5580 5646 -527 2 776 296 343 121 9 chr12 25158329 25158544 -96098986 + L1ME3 LINE L1 5758 5996 -166 2 776 8738 19 0 0 chr12 25158560 25160188 -96097342 - L1Md_T LINE L1 0 6582 4956 2 776 1385 226 99 16 chr12 25160398 25160772 -96096758 + MTD LTR MaLR 1 405 -14 2 776 526 314 6 39 chr12 25160785 25160964 -96096566 + ID_B1 SINE B4 49 221 -3 2 776 2193 138 55 3 chr12 25162398 25162760 -96094770 + MTC LTR MaLR 38 418 -3 2 776 431 266 18 0 chr12 25163100 25163213 -96094317 - PB1D10 SINE Alu -1 116 2 2 776 772 250 6 12 chr12 25163267 25163437 -96094093 + B3A SINE B2 1 169 -29 2 776 1028 272 64 21 chr12 25163537 25163913 -96093617 - L1MA8 LINE L1 -310 5981 5590 2 776 489 316 18 55 chr12 25165017 25165181 -96092349 - RSINE1 SINE B4 -6 159 2 2 776 192 40 0 0 chr12 25165187 25165212 -96092318 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 776 830 248 39 13 chr12 25165218 25165447 -96092083 - RMER15 LTR ERVL 0 575 341 2 776 289 239 53 32 chr12 25165487 25165582 -96091948 - RMER15 LTR ERVL -415 160 64 2 776 284 280 112 0 chr12 25165618 25165715 -96091815 - B1F1 SINE Alu -12 105 1 2 1 714 281 23 6 chr12 25165740 25165912 -96091618 + B3A SINE B2 2 176 -22 2 777 399 118 0 0 chr12 25165914 25165990 -96091540 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 777 21 36 0 0 chr12 25166266 25166294 -96091236 + AT_rich Low_complexity Low_complexity 1 28 0 2 777 1070 130 6 0 chr12 25166342 25166519 -96091011 + (TTC)n Simple_repeat Simple_repeat 1 178 0 2 777 599 291 6 25 chr12 25166584 25166746 -96090784 + RSINE1 SINE B4 2 160 -5 2 777 342 0 0 0 chr12 25166834 25166872 -96090658 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 777 21 36 0 0 chr12 25167407 25167435 -96090095 + AT_rich Low_complexity Low_complexity 1 28 0 2 777 279 54 0 0 chr12 25167441 25167478 -96090052 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 777 434 286 62 38 chr12 25167494 25167654 -96089876 - RSINE1 SINE B4 0 165 2 2 777 238 64 0 78 chr12 25167719 25167770 -96089760 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 2 777 443 317 37 56 chr12 25168465 25168756 -96088774 + L1M5 LINE L1 4732 5019 -1127 2 777 225 94 0 0 chr12 25168758 25168790 -96088740 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 777 694 308 26 22 chr12 25168828 25169057 -96088473 - B4A SINE B4 -10 282 53 2 777 227 325 34 17 chr12 25169147 25169266 -96088264 - B4 SINE B4 -170 122 2 2 777 700 182 169 6 chr12 25169295 25169472 -96088058 - B3 SINE B2 0 216 11 2 777 662 262 7 0 chr12 25169537 25169686 -96087844 + RSINE1 SINE B4 12 161 -4 2 777 1212 244 57 18 chr12 25169778 25170112 -96087418 - ORR1E LTR MaLR -8 351 5 2 777 327 222 45 108 chr12 25170223 25170334 -96087196 - PB1 SINE Alu 0 127 24 2 777 197 256 212 8 chr12 25171003 25171121 -96086409 + MIRb SINE MIR 68 209 -59 2 777 180 290 46 74 chr12 25171743 25171851 -96085679 - MIRb SINE MIR -101 167 63 2 777 207 100 0 0 chr12 25172446 25172476 -96085054 + (TCC)n Simple_repeat Simple_repeat 2 31 0 2 777 281 284 40 0 chr12 25172863 25172937 -96084593 + B3A SINE B2 1 77 -121 2 777 833 131 6 0 chr12 25172943 25173119 -96084411 + (TG)n Simple_repeat Simple_repeat 1 177 0 2 777 211 45 87 43 chr12 25173120 25173181 -96084349 + (TCTG)n Simple_repeat Simple_repeat 1 63 0 2 777 402 272 3 6 chr12 25173181 25173508 -96084022 + (TG)n Simple_repeat Simple_repeat 1 325 0 2 777 243 224 0 0 chr12 25173508 25173557 -96083973 + B3A SINE B2 91 139 -59 2 777 186 333 30 0 chr12 25173934 25174033 -96083497 + L2 LINE L2 2949 3050 -369 3 777 327 294 94 14 chr12 25174112 25174250 -96083280 - B1F SINE Alu 0 149 1 3 777 247 196 20 0 chr12 25174263 25174314 -96083216 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 777 588 247 191 32 chr12 25174314 25174565 -96082965 - B4A SINE B4 0 292 2 3 777 1362 92 5 0 chr12 25174622 25174806 -96082724 - B2_Mm1a SINE B2 -8 185 1 3 777 703 321 49 83 chr12 25174990 25175227 -96082303 + Charlie7 DNA MER1_type 990 1232 -1380 3 777 466 192 173 16 chr12 25175227 25175354 -96082176 + RSINE1 SINE B4 2 148 -17 3 777 703 321 49 83 chr12 25175354 25175704 -96081826 + Charlie7 DNA MER1_type 1233 1557 -1055 3 777 439 279 91 17 chr12 25176078 25176253 -96081277 - B3A SINE B2 -10 188 1 3 777 567 62 0 0 chr12 25176282 25176362 -96081168 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 3 777 234 0 0 0 chr12 25176504 25176530 -96081000 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 3 777 1190 68 0 0 chr12 25176542 25176689 -96080841 + B1_Mm SINE Alu 1 147 0 3 777 198 0 0 0 chr12 25176689 25176711 -96080819 + (A)n Simple_repeat Simple_repeat 1 22 0 3 777 1191 48 0 26 chr12 25176976 25177127 -96080403 + B1_Mus2 SINE Alu 1 147 0 3 777 284 165 10 108 chr12 25178668 25178708 -96078822 - MT2A LTR ERVL -5 528 492 3 777 432 0 0 0 chr12 25178708 25178756 -96078774 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 777 284 165 10 108 chr12 25178756 25178812 -96078718 - MT2A LTR ERVL -42 491 442 3 777 369 265 10 39 chr12 25178812 25178914 -96078616 - RMER30 DNA MER1_type -1 201 103 3 777 431 242 69 15 chr12 25179279 25179409 -96078121 - RMER30 DNA MER1_type -59 143 7 3 777 450 381 64 58 chr12 25179422 25179890 -96077640 - MLT2B3 LTR ERVL -83 471 1 3 777 209 240 39 26 chr12 25180019 25180096 -96077434 + L2 LINE L2 2116 2193 -1226 3 777 481 181 0 50 chr12 25180462 25180561 -96076969 - PB1D10 SINE Alu 0 117 24 3 777 588 259 50 12 chr12 25180490 25180562 -96076968 - ID_B1 SINE B4 -49 175 104 3 777 333 0 0 0 chr12 25180562 25180599 -96076931 + (TATG)n Simple_repeat Simple_repeat 1 37 0 3 777 588 259 50 12 chr12 25180599 25180686 -96076844 - ID_B1 SINE B4 -121 103 10 3 777 342 286 8 16 chr12 25180693 25180713 -96076817 - ID_B1 SINE B4 -26 198 127 3 777 418 202 11 11 chr12 25180713 25180803 -96076727 - PB1D10 SINE Alu -19 98 9 3 777 342 286 8 16 chr12 25180803 25180814 -96076716 - ID_B1 SINE B4 -26 126 79 3 777 1055 72 0 0 chr12 25180814 25180952 -96076578 - L1_Mm LINE L1 -3246 2637 2500 3 777 1525 99 66 13 chr12 25180952 25181178 -96076352 + L1Md_F2 LINE L1 6345 6582 0 3 777 263 296 12 0 chr12 25181343 25181424 -96076106 - ID4_ SINE ID 0 83 2 3 777 240 176 13 39 chr12 25181429 25181506 -96076024 - L1M5 LINE L1 -2662 3484 3410 3 777 1171 61 7 0 chr12 25181526 25181673 -96075857 - B1_Mus1 SINE Alu 0 148 1 3 777 722 159 83 0 chr12 25181725 25181857 -96075673 + B1_Mus1 SINE Alu 1 143 -5 3 777 1095 191 28 9 chr12 25182002 25182214 -96075316 - B3 SINE B2 0 216 1 3 777 807 174 0 32 chr12 25182602 25182756 -96074774 + B1_Mur4 SINE Alu 2 150 0 3 777 561 197 57 8 chr12 25183159 25183282 -96074248 + B1_Mus2 SINE Alu 1 129 -18 3 777 2072 159 74 18 chr12 25183958 25184349 -96073181 - MTC LTR MaLR -8 413 1 3 777 1220 133 11 0 chr12 25184954 25185142 -96072388 + B2_Mm1t SINE B2 3 192 -1 3 777 207 88 0 0 chr12 25185666 25185700 -96071830 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 777 892 167 0 14 chr12 25185700 25185846 -96071684 - B1_Mur3 SINE Alu -1 148 5 3 777 249 281 12 0 chr12 25185986 25186068 -96071462 - MIRc SINE MIR -16 252 170 3 777 258 200 33 0 chr12 25186128 25186188 -96071342 - PB1D9 SINE Alu -2 118 57 3 777 41 36 0 0 chr12 25188707 25188762 -96068768 + AT_rich Low_complexity Low_complexity 1 55 0 3 777 569 151 175 8 chr12 25188923 25189043 -96068487 - B1_Mur1 SINE Alu -5 144 5 3 777 419 216 51 10 chr12 25189155 25189253 -96068277 - PB1D10 SINE Alu -1 116 15 3 777 841 166 13 27 chr12 25189396 25189545 -96067985 - B1_Mus2 SINE Alu 0 147 1 3 777 203 324 0 14 chr12 25190482 25190554 -96066976 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 3 777 442 197 181 43 chr12 25190649 25190787 -96066743 - B3 SINE B2 -7 209 53 3 777 464 338 106 19 chr12 25191530 25191738 -96065792 + B4A SINE B4 1 226 -66 3 777 1324 60 48 0 chr12 25191741 25191909 -96065621 + B2_Mm2 SINE B2 1 176 -19 3 777 851 231 49 20 chr12 25191916 25192119 -96065411 + B3 SINE B2 2 210 -6 3 777 710 207 14 20 chr12 25192550 25192698 -96064832 + B1_Mur2 SINE Alu 3 149 0 3 777 536 111 0 0 chr12 25192905 25192986 -96064544 + B2_Mm2 SINE B2 3 83 -112 3 777 2016 179 40 12 chr12 25192987 25193389 -96064141 - MTC LTR MaLR -8 413 1 3 777 524 194 31 46 chr12 25193389 25193511 -96064019 + B2_Mm2 SINE B2 76 195 0 3 777 315 363 13 58 chr12 25193521 25193676 -96063854 + B1_Mur1 SINE Alu 2 149 0 3 777 315 276 29 22 chr12 25193688 25193825 -96063705 + (CATA)n Simple_repeat Simple_repeat 1 138 0 3 777 2370 80 6 58 chr12 25194622 25194967 -96062563 - ORR1A2 LTR MaLR 0 327 1 3 777 521 191 61 43 chr12 25194997 25195112 -96062418 - PB1D10 SINE Alu 0 117 1 3 777 491 236 0 9 chr12 25195346 25195453 -96062077 - PB1D9 SINE Alu -6 114 9 3 777 664 211 201 21 chr12 25195458 25195647 -96061883 - ID_B1 SINE B4 0 224 2 3 777 492 281 145 18 chr12 25196918 25197194 -96060336 - L2 LINE L2 -747 2672 2362 3 777 231 286 18 0 chr12 25197236 25197289 -96060241 - ID4 SINE ID -20 63 10 3 777 800 206 97 14 chr12 25197289 25197496 -96060034 - MTD LTR MaLR -2 417 194 3 777 838 220 44 15 chr12 25197759 25197962 -96059568 - MTD LTR MaLR -210 209 1 3 777 1051 44 0 0 chr12 25197996 25198132 -96059398 + B1_Mus1 SINE Alu 13 148 0 3 777 264 286 107 0 chr12 25198159 25198271 -96059259 - MER104 DNA Tc2 -57 124 1 3 777 294 299 82 45 chr12 25198623 25198868 -96058662 - L2 LINE L2 -1663 1756 1503 3 777 207 0 0 0 chr12 25199263 25199286 -96058244 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 777 684 216 83 12 chr12 25199888 25200057 -96057473 + B3 SINE B2 32 212 -4 3 777 1074 74 0 0 chr12 25200146 25200281 -96057249 + B1_Mus2 SINE Alu 2 136 -11 3 777 249 57 0 0 chr12 25200281 25200316 -96057214 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 777 775 154 0 47 chr12 25200441 25200591 -96056939 - B1_Mur4 SINE Alu 0 150 8 3 777 549 110 0 0 chr12 25200671 25200753 -96056777 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 777 621 281 25 6 chr12 25200849 25201010 -96056520 + RSINE1 SINE B4 2 165 0 3 777 435 195 0 0 chr12 25201010 25201128 -96056402 + (CA)n Simple_repeat Simple_repeat 1 118 0 3 777 279 299 35 42 chr12 25201184 25201327 -96056203 + L2a LINE L2 3115 3256 -170 3 777 998 287 46 34 chr12 25202011 25202361 -96055169 - MTEa LTR MaLR -13 366 13 3 777 186 331 83 48 chr12 25202932 25203100 -96054430 + MIR SINE MIR 2 175 -87 3 777 367 303 45 41 chr12 25203382 25203602 -96053928 + L2 LINE L2 2279 2499 -920 3 777 432 0 0 0 chr12 25203749 25203797 -96053733 + (CACCT)n Simple_repeat Simple_repeat 3 50 0 3 777 305 233 80 0 chr12 25204504 25204613 -96052917 - B1_Mur3 SINE Alu 0 120 2 3 777 289 242 9 64 chr12 25204525 25204629 -96052901 - MT2B2 LTR ERVL -351 250 150 3 777 700 265 66 10 chr12 25205351 25205549 -96051981 + B3 SINE B2 2 210 -6 3 777 464 181 16 65 chr12 25205576 25205700 -96051830 + PB1D9 SINE Alu 3 120 0 3 777 241 189 37 19 chr12 25205712 25205766 -96051764 - L1MB7 LINE L1 -57 6127 6073 3 777 375 221 0 0 chr12 25206982 25207068 -96050462 + CT-rich Low_complexity Low_complexity 3 88 0 3 777 1024 38 0 0 chr12 25207088 25207219 -96050311 - B1_Mus2 SINE Alu 0 147 17 3 777 200 329 14 14 chr12 25207342 25207413 -96050117 + L2a LINE L2 3294 3364 -62 3 777 544 239 9 0 chr12 25208367 25208476 -96049054 - PB1D10 SINE Alu -7 110 1 3 777 23 0 0 0 chr12 25208593 25208616 -96048914 + AT_rich Low_complexity Low_complexity 1 23 0 3 777 632 285 69 69 chr12 25209910 25210215 -96047315 + Tigger7 DNA MER2_type 33 337 -2154 3 777 453 301 14 27 chr12 25210215 25210362 -96047168 + Tigger7 DNA MER2_type 260 404 -2087 3 777 484 279 109 13 chr12 25210420 25210576 -96046954 - B3A SINE B2 -27 171 1 3 777 556 206 53 27 chr12 25210601 25210751 -96046779 + Tigger7 DNA MER2_type 2316 2469 -22 3 777 228 234 0 0 chr12 25210914 25210961 -96046569 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 777 30 0 0 0 chr12 25211213 25211243 -96046287 + AT_rich Low_complexity Low_complexity 1 30 0 3 777 543 283 19 0 chr12 25211399 25211558 -96045972 + RSINE1 SINE B4 2 163 -2 3 777 198 91 0 0 chr12 25212253 25212286 -96045244 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3 777 25 0 0 0 chr12 25212548 25212573 -96044957 + AT_rich Low_complexity Low_complexity 1 25 0 3 777 23 0 0 0 chr12 25212583 25212606 -96044924 + AT_rich Low_complexity Low_complexity 1 23 0 3 777 1297 50 0 0 chr12 25212680 25212841 -96044689 - L1_Mus1 LINE L1 0 6567 6407 3 777 670 291 102 4 chr12 25213564 25213799 -96043731 - B4A SINE B4 -28 264 7 3 777 610 216 141 78 chr12 25214360 25214566 -96042964 - B4A SINE B4 -73 219 1 3 777 1297 153 104 30 chr12 25214568 25214837 -96042693 - MTD LTR MaLR -12 407 119 3 777 294 148 0 0 chr12 25214868 25214922 -96042608 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 777 496 258 45 54 chr12 25215116 25215337 -96042193 - L1M2 LINE L1 -693 5610 5392 3 777 1059 235 87 104 chr12 25215339 25215735 -96041795 - L1M2 LINE L1 -2379 3764 3361 3 777 710 197 165 35 chr12 25215735 25215935 -96041595 + URR1A DNA MER1_type 1 226 0 3 777 1059 235 87 104 chr12 25215935 25216127 -96041403 - L1M2 LINE L1 -2783 3360 3186 3 777 325 281 0 109 chr12 25216147 25216239 -96041291 + B1F1 SINE Alu 2 83 -66 3 777 294 211 14 6 chr12 25216512 25216600 -96040930 - B1F SINE Alu -3 117 31 4 777 263 203 34 0 chr12 25216651 25216710 -96040820 - L1MEc LINE L1 -6011 389 329 4 777 525 298 80 33 chr12 25217368 25217580 -96039950 - L1MA9 LINE L1 -287 6025 5804 4 777 952 288 30 84 chr12 25217585 25217989 -96039541 - MTE2a LTR MaLR -18 401 13 4 777 902 259 100 3 chr12 25218014 25218367 -96039163 - MTE2a-int LTR MaLR 0 1580 1138 4 777 449 208 181 0 chr12 25218372 25218516 -96039014 - MTE2a-int LTR MaLR -556 1024 855 4 777 869 167 7 7 chr12 25218518 25218657 -96038873 + B1_Mus1 SINE Alu 2 140 -8 4 777 488 132 165 0 chr12 25218687 25218778 -96038752 - B3 SINE B2 -101 115 10 4 777 424 292 8 0 chr12 25218834 25218954 -96038576 - RSINE1 SINE B4 -42 123 3 4 777 240 35 0 0 chr12 25219152 25219181 -96038349 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 777 1127 76 7 0 chr12 25219193 25219338 -96038192 - B1_Mus2 SINE Alu 0 147 2 4 777 282 287 50 0 chr12 25219341 25219442 -96038088 - L1MC4 LINE L1 -137 7905 7800 4 777 270 73 0 0 chr12 25219572 25219613 -96037917 + (A)n Simple_repeat Simple_repeat 1 41 0 4 777 257 257 100 0 chr12 25223602 25223672 -96033858 + 4.5SRNA scRNA scRNA 12 88 -6 4 777 487 250 25 25 chr12 25223611 25223730 -96033800 + B1F SINE Alu 31 149 0 4 777 201 263 36 95 chr12 25223768 25223852 -96033678 + MER5A DNA MER1_type 86 164 -25 4 777 432 0 0 0 chr12 25224875 25224923 -96032607 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 777 476 262 56 0 chr12 25224923 25225049 -96032481 - B1_Mur1 SINE Alu -16 133 1 4 777 489 257 8 42 chr12 25225294 25225412 -96032118 + ID_B1 SINE B4 85 198 -26 4 777 1168 54 7 13 chr12 25225518 25225667 -96031863 - B1_Mus1 SINE Alu 0 148 1 4 777 1366 162 38 38 chr12 25227230 25227493 -96030037 + RLTR20D LTR ERVK 198 460 -108 4 777 231 61 0 0 chr12 25227980 25228013 -96029517 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 4 777 805 164 8 0 chr12 25228241 25228369 -96029161 + B3 SINE B2 2 130 -86 4 777 508 210 174 16 chr12 25228498 25228619 -96028911 - B1_Mur1 SINE Alu -5 144 5 4 777 666 286 7 0 chr12 25228689 25228836 -96028694 - RSINE1 SINE B4 -15 150 3 4 777 704 237 118 0 chr12 25228863 25229015 -96028515 - B3A SINE B2 -26 172 3 4 777 27 62 0 0 chr12 25229047 25229095 -96028435 + AT_rich Low_complexity Low_complexity 1 48 0 4 777 421 181 61 226 chr12 25230035 25230199 -96027331 - B1F2 SINE Alu -10 139 3 4 777 443 278 0 50 chr12 25231100 25231221 -96026309 + PB1D10 SINE Alu 2 116 -1 4 777 473 227 35 35 chr12 25231685 25231799 -96025731 + PB1D10 SINE Alu 3 116 -1 4 777 1140 55 7 0 chr12 25232246 25232391 -96025139 - B1_Mus1 SINE Alu 0 148 3 4 777 257 310 0 14 chr12 25233047 25233119 -96024411 - ID4 SINE ID -11 72 2 4 777 271 239 71 111 chr12 25233127 25233226 -96024304 - PB1 SINE Alu -2 125 31 4 777 189 94 0 0 chr12 25236101 25236133 -96021397 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 4 777 1063 219 125 8 chr12 25236388 25236628 -96020902 + B4A SINE B4 2 269 -23 4 777 187 31 62 0 chr12 25236628 25236660 -96020870 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 777 231 266 92 41 chr12 25236709 25236905 -96020625 + L1ME1 LINE L1 5072 5277 -869 4 777 2116 91 48 3 chr12 25237066 25237375 -96020155 + L1_Mus3 LINE L1 6311 6633 -5 4 777 471 274 137 13 chr12 25237559 25237785 -96019745 + L1ME1 LINE L1 5908 6161 -18 4 777 55 29 0 0 chr12 25238138 25238207 -96019323 + AT_rich Low_complexity Low_complexity 1 69 0 4 777 1051 113 68 0 chr12 25238432 25238609 -96018921 - Lx LINE L1 0 6654 6466 4 777 281 212 61 0 chr12 25238863 25238929 -96018601 - B1F1 SINE Alu -2 147 78 4 777 180 0 0 0 chr12 25238967 25238987 -96018543 + (T)n Simple_repeat Simple_repeat 1 20 0 4 777 1015 55 0 0 chr12 25238995 25239122 -96018408 + B1_Mus1 SINE Alu 22 148 0 4 777 444 176 165 0 chr12 25239123 25239208 -96018322 - PB1D9 SINE Alu -13 107 9 4 777 185 167 45 45 chr12 25239318 25239362 -96018168 - L2a LINE L2 -1 3425 3382 4 777 1894 194 97 22 chr12 25239380 25239792 -96017738 + Lx5 LINE L1 6608 7050 0 4 777 1699 176 99 10 chr12 25241685 25242298 -96015232 - Lx9 LINE L1 -7 7637 6970 4 777 276 77 0 0 chr12 25242298 25242337 -96015193 + (GGA)n Simple_repeat Simple_repeat 1 39 0 4 777 443 179 21 10 chr12 25242338 25242434 -96015096 - Lx9 LINE L1 -660 6984 6888 4 777 1113 230 5 0 chr12 25242479 25242692 -96014838 + B3 SINE B2 2 215 -1 4 777 383 174 207 11 chr12 25243514 25243601 -96013929 - B1F SINE Alu -33 116 13 4 777 465 274 33 27 chr12 25244519 25244703 -96012827 - L1M5 LINE L1 -2196 3950 3766 4 777 307 281 74 46 chr12 25244724 25244832 -96012698 - PB1D10 SINE Alu 0 117 7 4 777 325 308 100 0 chr12 25246271 25246391 -96011139 + B4A SINE B4 2 133 -159 4 777 1184 125 0 6 chr12 25246558 25246727 -96010803 + B2_Mm2 SINE B2 2 169 -26 4 777 225 0 0 0 chr12 25246730 25246755 -96010775 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 4 777 948 178 0 0 chr12 25246843 25247023 -96010507 + GA-rich Low_complexity Low_complexity 1 180 0 4 777 550 50 59 20 chr12 25247025 25247127 -96010403 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 4 777 365 281 69 17 chr12 25247884 25248000 -96009530 - MIR SINE MIR -116 146 25 4 777 1096 156 31 15 chr12 25249105 25249301 -96008229 + B3 SINE B2 11 209 -7 4 777 1382 46 17 0 chr12 25249772 25249947 -96007583 - B2_Mm1a SINE B2 -14 179 2 4 777 455 182 75 62 chr12 25249995 25250141 -96007389 - Lx6 LINE L1 -30 7430 7283 4 777 362 306 18 9 chr12 25251247 25251356 -96006174 - PB1D10 SINE Alu 0 117 8 4 777 239 338 0 0 chr12 25251293 25251364 -96006166 - ID_B1 SINE B4 -73 151 81 4 777 230 265 43 29 chr12 25251775 25251845 -96005685 - ID2 SINE ID -10 73 3 4 777 246 293 166 7 chr12 25252099 25252250 -96005280 - MIRb SINE MIR -43 225 51 4 777 269 298 86 9 chr12 25252808 25252913 -96004617 + PB1D10 SINE Alu 3 115 -2 4 777 737 126 0 0 chr12 25252926 25253029 -96004501 + B1_Mur4 SINE Alu 5 107 -43 4 777 284 274 90 45 chr12 25253102 25253213 -96004317 + PB1D10 SINE Alu 1 116 -1 4 777 468 303 20 40 chr12 25253329 25253480 -96004050 + RSINE1 SINE B4 3 150 -15 4 777 336 64 0 0 chr12 25253486 25253533 -96003997 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 777 728 248 0 0 chr12 25254016 25254169 -96003361 + RSINE1 SINE B4 3 155 -10 4 777 24 0 0 0 chr12 25254190 25254214 -96003316 + AT_rich Low_complexity Low_complexity 1 24 0 4 777 412 266 186 0 chr12 25254324 25254437 -96003093 - ID_B1 SINE B4 -4 220 87 4 777 515 308 154 17 chr12 25255282 25255685 -96001845 + L2 LINE L2 2116 2573 -846 4 777 276 187 139 6 chr12 25255701 25255791 -96001739 - PB1D7 SINE Alu -39 111 9 4 777 310 300 223 54 chr12 25255825 25256121 -96001409 + L2 LINE L2 2608 2953 -466 4 777 26 0 0 0 chr12 25257202 25257228 -96000302 + GC_rich Low_complexity Low_complexity 1 26 0 4 777 22 35 0 0 chr12 25259311 25259340 -95998190 + AT_rich Low_complexity Low_complexity 1 29 0 4 777 600 84 0 0 chr12 25259378 25259461 -95998069 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 777 414 0 0 0 chr12 25259461 25259507 -95998023 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 777 272 292 46 0 chr12 25259507 25259572 -95997958 - RSINE1 SINE B4 -44 121 54 4 777 616 233 74 20 chr12 25259636 25259785 -95997745 - RSINE1 SINE B4 -6 159 3 4 777 189 0 0 0 chr12 25260258 25260279 -95997251 + (G)n Simple_repeat Simple_repeat 1 21 0 4 777 228 265 0 0 chr12 25260535 25260584 -95996946 - ID SINE ID -149 75 27 4 777 183 114 0 0 chr12 25260656 25260691 -95996839 + (T)n Simple_repeat Simple_repeat 1 35 0 4 777 1443 59 37 11 chr12 25261418 25261606 -95995924 - B2_Mm2 SINE B2 -1 194 2 4 777 540 285 82 57 chr12 25262011 25262212 -95995318 - B3A SINE B2 0 195 9 4 777 1174 190 14 5 chr12 25262398 25262610 -95994920 + B3 SINE B2 1 214 -2 4 777 234 0 0 0 chr12 25263260 25263286 -95994244 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4 777 400 186 0 0 chr12 25263289 25263359 -95994171 + ID_B1 SINE B4 84 153 -71 4 777 386 211 72 2 chr12 25263359 25263396 -95994134 + PB1D10 SINE Alu 3 118 -2 4 777 642 262 20 0 chr12 25263674 25263823 -95993707 - RSINE1 SINE B4 -12 153 2 4 777 411 191 169 0 chr12 25263861 25263950 -95993580 + PB1D10 SINE Alu 1 104 -13 4 777 211 175 0 48 chr12 25264268 25264294 -95993236 + polypyrimidine Low_complexity Low_complexity 18 42 0 4 777 1233 41 7 0 chr12 25264294 25264440 -95993090 - B1_Mus2 SINE Alu 0 147 1 4 777 211 175 0 48 chr12 25264440 25264455 -95993075 + polypyrimidine Low_complexity Low_complexity 3 17 0 4 777 286 270 97 103 chr12 25264915 25265080 -95992450 + RSINE1 SINE B4 2 165 0 4 777 1329 239 129 26 chr12 25265338 25265717 -95991813 + MTD LTR MaLR 1 418 -1 4 777 208 345 272 0 chr12 25265719 25265833 -95991697 - MIR SINE MIR -108 160 16 4 777 260 274 0 0 chr12 25266087 25266138 -95991392 + tRNA-Ala-GCA tRNA tRNA 19 69 -6 4 777 504 0 0 0 chr12 25267294 25267350 -95990180 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 777 399 82 13 27 chr12 25267381 25267456 -95990074 + (TTTA)n Simple_repeat Simple_repeat 4 77 0 4 777 947 147 0 39 chr12 25267464 25267620 -95989910 - B1_Mur4 SINE Alu 0 150 1 4 777 24 0 0 0 chr12 25267633 25267657 -95989873 + AT_rich Low_complexity Low_complexity 1 24 0 5 777 344 363 50 29 chr12 25268450 25268589 -95988941 - MER58A DNA MER1_type -5 219 78 5 777 292 203 0 0 chr12 25269532 25269591 -95987939 - B3A SINE B2 -139 59 1 5 777 239 267 80 0 chr12 25270082 25270157 -95987373 - ID4_ SINE ID -1 82 2 5 777 307 312 14 14 chr12 25270457 25270600 -95986930 - B1F SINE Alu -6 143 1 5 777 801 211 0 7 chr12 25271603 25271751 -95985779 + B1_Mur1 SINE Alu 2 148 -1 5 777 277 152 45 0 chr12 25271751 25271817 -95985713 + G-rich Low_complexity Low_complexity 6 74 0 5 777 293 43 0 42 chr12 25272330 25272378 -95985152 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 5 777 228 253 66 44 chr12 25272989 25273080 -95984450 - BC1_Mm scRNA scRNA -37 115 23 5 777 282 191 83 56 chr12 25273023 25273095 -95984435 - ID SINE ID -140 84 11 5 777 408 237 0 58 chr12 25273525 25273628 -95983902 + PB1D10 SINE Alu 3 99 -18 5 777 308 235 100 57 chr12 25275572 25275712 -95981818 - L1MDa LINE L1 -5309 1324 1179 5 777 438 303 16 0 chr12 25276056 25276178 -95981352 + RSINE1 SINE B4 3 126 -39 5 777 558 284 98 47 chr12 25276390 25276667 -95980863 + B4A SINE B4 2 292 0 5 777 731 140 138 8 chr12 25276693 25276823 -95980707 + B1_Mus2 SINE Alu 1 147 0 5 777 304 53 70 0 chr12 25277528 25277585 -95979945 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 5 777 2499 152 39 12 chr12 25280316 25280722 -95976808 - MTC LTR MaLR -4 417 1 5 777 1336 243 184 0 chr12 25280764 25281118 -95976412 - MTD LTR MaLR 0 419 1 5 777 239 229 0 0 chr12 25281121 25281169 -95976361 + ID2 SINE ID 23 70 -13 5 777 305 265 0 0 chr12 25282558 25282626 -95974904 + ID4 SINE ID 2 69 -14 5 777 806 161 51 0 chr12 25282667 25282804 -95974726 + B1_Mus1 SINE Alu 3 146 -2 5 777 348 119 0 0 chr12 25283508 25283567 -95973963 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 777 818 270 60 46 chr12 25283570 25283852 -95973678 - B4A SINE B4 0 292 11 5 777 321 26 0 0 chr12 25284804 25284842 -95972688 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 777 1053 252 40 16 chr12 25285137 25285387 -95972143 + B4 SINE B4 1 256 -36 5 777 315 0 0 0 chr12 25285389 25285424 -95972106 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 777 1198 60 94 18 chr12 25285438 25285608 -95971922 - B2_Mm2 SINE B2 -11 184 2 5 777 382 100 13 17 chr12 25288447 25288555 -95968975 - B2_Mm2 SINE B2 -6 189 47 5 777 1289 69 23 0 chr12 25288606 25288780 -95968750 - B2_Mm1t SINE B2 -14 179 2 5 777 267 304 57 29 chr12 25289118 25289223 -95968307 + PB1D10 SINE Alu 10 117 0 5 777 335 316 192 12 chr12 25290205 25290455 -95967075 - L1MEc LINE L1 -4829 1571 1277 5 777 371 312 135 0 chr12 25290514 25290684 -95966846 - L1MEc LINE L1 -5217 1183 991 5 777 245 325 0 0 chr12 25290751 25290828 -95966702 - ID4 SINE ID -5 78 2 5 777 399 273 125 68 chr12 25290917 25291212 -95966318 - L1MEc LINE L1 -5547 853 542 5 777 784 276 60 35 chr12 25291651 25291933 -95965597 - B4A SINE B4 -3 289 1 5 777 461 280 17 4 chr12 25293129 25293248 -95964282 - B1_Mur3 SINE Alu -4 116 2 5 777 708 160 120 0 chr12 25293821 25293946 -95963584 - B1_Mus1 SINE Alu 0 148 9 5 777 469 250 86 29 chr12 25294729 25294869 -95962661 + B1F SINE Alu 1 148 -1 5 777 441 230 104 0 chr12 25295772 25295907 -95961623 - B1F SINE Alu 0 149 1 5 778 225 307 96 29 chr12 25297482 25297586 -95959944 + B1F2 SINE Alu 1 111 -38 5 778 391 209 295 0 chr12 25297942 25298047 -95959483 - B1F SINE Alu -13 136 1 5 778 318 216 70 19 chr12 25298211 25298323 -95959207 - B1F1 SINE Alu -33 114 1 5 778 312 27 0 0 chr12 25298710 25298747 -95958783 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 778 850 227 103 0 chr12 25298757 25298942 -95958588 + B3 SINE B2 2 205 -11 5 778 1110 62 13 52 chr12 25298947 25299100 -95958430 + B1_Mm SINE Alu 1 147 0 5 778 195 42 0 0 chr12 25299113 25299137 -95958393 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 778 422 266 21 0 chr12 25299463 25299557 -95957973 - PB1D7 SINE Alu -19 101 6 5 778 489 47 0 0 chr12 25299997 25300061 -95957469 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 778 692 214 0 28 chr12 25300061 25300205 -95957325 - RSINE1 SINE B4 -24 141 2 5 778 23 0 0 0 chr12 25301458 25301481 -95956049 + AT_rich Low_complexity Low_complexity 1 23 0 5 778 256 271 11 45 chr12 25302307 25302396 -95955134 - PB1D9 SINE Alu -33 87 2 5 778 230 306 92 101 chr12 25302368 25302407 -95955123 - MT2B2 LTR ERVL -297 287 181 5 778 363 261 0 0 chr12 25302407 25302476 -95955054 - PB1D10 SINE Alu -32 85 17 5 778 1319 271 133 10 chr12 25303948 25304527 -95953003 + ERVL-B4-int LTR ERVL 4111 4760 -954 5 778 376 226 155 9 chr12 25304533 25304649 -95952881 + ID_B1 SINE B4 90 222 -2 5 778 389 286 36 87 chr12 25304842 25304980 -95952550 - MTEa LTR MaLR -247 132 2 5 778 3598 196 47 68 chr12 25305015 25305910 -95951620 - RMER13B LTR ERVK -53 905 1 5 778 840 258 79 30 chr12 25305926 25306294 -95951236 + ERVL-B4-int LTR ERVL 5296 5681 -76 5 778 505 282 30 0 chr12 25306413 25306544 -95950986 + ID_B1 SINE B4 86 220 -4 5 778 612 331 36 43 chr12 25306585 25306838 -95950692 + MLT2B1 LTR ERVL 148 398 -122 5 778 1782 121 146 6 chr12 25306950 25307265 -95950265 + RLTR15 LTR ERVK 1 359 0 5 778 686 298 57 37 chr12 25307273 25307611 -95949919 + RLTR15 LTR ERVK 1 347 -12 5 778 216 0 0 0 chr12 25307611 25307635 -95949895 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 778 686 298 57 37 chr12 25307635 25307648 -95949882 + RLTR15 LTR ERVK 348 359 0 5 778 309 246 135 23 chr12 25307889 25308022 -95949508 + RMER15 LTR ERVL 405 552 -23 5 778 330 191 0 60 chr12 25309120 25309187 -95948343 + B4 SINE B4 1 63 -229 5 778 266 277 140 37 chr12 25309187 25309401 -95948129 - L1M4 LINE L1 -5375 1167 932 5 778 585 272 45 25 chr12 25309517 25309717 -95947813 - L1M4 LINE L1 -5797 745 542 5 778 800 295 18 25 chr12 25309806 25310081 -95947449 - B4A SINE B4 -15 277 5 5 778 325 267 35 0 chr12 25310202 25310288 -95947242 - L1M4 LINE L1 -6118 424 336 5 778 275 273 133 50 chr12 25310348 25310529 -95947001 + L1ME1 LINE L1 5791 5986 -188 5 778 684 228 20 14 chr12 25310669 25310816 -95946714 - B1_Mur2 SINE Alu 0 149 2 5 778 686 244 188 58 chr12 25311368 25311727 -95945803 - MTD LTR MaLR -30 389 6 5 778 1076 232 13 38 chr12 25312785 25313022 -95944508 + B4A SINE B4 3 233 -59 5 778 553 254 14 21 chr12 25313014 25313155 -95944375 + RSINE1 SINE B4 6 145 -20 5 778 315 0 0 0 chr12 25313155 25313190 -95944340 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 778 224 72 0 45 chr12 25313344 25313388 -95944142 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 5 778 345 364 28 23 chr12 25313503 25313680 -95943850 - LTR31 LTR ERV1 -38 581 404 5 778 2090 116 89 73 chr12 25313687 25313818 -95943712 + MTC LTR MaLR 2 117 -304 5 778 2354 74 0 55 chr12 25313818 25314161 -95943369 - L1Md_F2 LINE L1 0 6582 6259 5 778 2090 116 89 73 chr12 25314161 25314410 -95943120 + MTC LTR MaLR 118 388 -33 5 778 1961 183 173 19 chr12 25314737 25315131 -95942399 + RLTR20A LTR ERVK 1 440 -101 5 778 273 89 0 0 chr12 25315131 25315176 -95942354 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 5 778 1961 183 173 19 chr12 25315176 25315250 -95942280 + RLTR20A LTR ERVK 441 540 -1 5 778 240 259 52 33 chr12 25315865 25315966 -95941564 - B1F2 SINE Alu -47 102 6 5 778 981 237 35 0 chr12 25316037 25316048 -95941482 - B3 SINE B2 -3 213 203 5 778 284 0 0 27 chr12 25316048 25316085 -95941445 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 5 778 981 237 35 0 chr12 25316085 25316271 -95941259 - B3 SINE B2 -14 202 10 5 778 222 37 0 0 chr12 25316849 25316876 -95940654 + (T)n Simple_repeat Simple_repeat 1 27 0 5 778 1266 34 0 7 chr12 25316876 25317024 -95940506 - B1_Mus2 SINE Alu 0 147 1 5 778 243 0 0 0 chr12 25317301 25317328 -95940202 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 778 327 285 89 44 chr12 25317477 25317657 -95939873 + L1M4 LINE L1 5395 5582 -596 5 778 311 319 111 8 chr12 25317909 25317978 -95939552 - ID_B1 SINE B4 -5 219 139 5 778 778 122 365 35 chr12 25317978 25318148 -95939382 - URR1A DNA MER1_type 0 226 1 5 778 311 319 111 8 chr12 25318148 25318195 -95939335 - ID_B1 SINE B4 -86 138 91 5 778 22 0 0 0 chr12 25319377 25319399 -95938131 + AT_rich Low_complexity Low_complexity 1 22 0 5 778 2532 89 3 3 chr12 25319968 25320295 -95937235 - ORR1A2 LTR MaLR 0 327 1 5 778 497 261 21 76 chr12 25320601 25320746 -95936784 - B1_Mur1 SINE Alu -10 139 3 5 778 269 333 15 0 chr12 25320765 25320831 -95936699 - B1F2 SINE Alu -63 86 20 5 778 188 265 83 12 chr12 25320920 25321004 -95936526 + MIR SINE MIR 25 114 -94 5 778 919 239 48 44 chr12 25322203 25322377 -95935153 - MER2 DNA MER2_type -2 343 171 5 778 2432 89 166 3 chr12 25322377 25322739 -95934791 + MTC LTR MaLR 1 421 0 5 778 919 239 48 44 chr12 25322739 25322835 -95934695 - MER2 DNA MER2_type -175 170 72 5 778 1932 140 6 22 chr12 25324089 25324411 -95933119 + ORR1A4 LTR MaLR 5 321 -8 5 778 286 266 55 24 chr12 25324775 25324902 -95932628 - L1MD3 LINE L1 -6 7989 7859 5 778 280 282 0 14 chr12 25325493 25325565 -95931965 - ID4 SINE ID -11 72 2 5 778 1039 139 47 0 chr12 25325622 25325794 -95931736 + B2_Mm2 SINE B2 2 181 -14 5 778 442 279 53 65 chr12 25325785 25325954 -95931576 + ORR1D2 LTR MaLR 144 310 -60 5 778 426 252 18 18 chr12 25325961 25326074 -95931456 - MER2 DNA MER2_type -134 211 99 5 778 893 175 187 0 chr12 25326107 25326273 -95931257 - B3 SINE B2 -19 197 1 5 778 284 299 140 20 chr12 25326425 25326575 -95930955 - MIRb SINE MIR -8 260 93 5 778 207 0 0 0 chr12 25326962 25326985 -95930545 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 5 778 287 273 69 54 chr12 25327640 25327758 -95929772 + MER5A DNA MER1_type 18 150 -39 5 778 346 189 19 0 chr12 25328191 25328297 -95929233 + CT-rich Low_complexity Low_complexity 1 108 0 6 778 216 0 0 0 chr12 25328575 25328599 -95928931 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 778 1263 81 35 6 chr12 25328599 25328773 -95928757 - B2_Mm2 SINE B2 -15 180 2 6 778 313 346 102 6 chr12 25329642 25329799 -95927731 - Charlie18a DNA MER1_type -41 301 130 6 778 1328 0 7 0 chr12 25330121 25330267 -95927263 - B1_Mm SINE Alu 0 147 1 6 778 262 164 162 14 chr12 25330268 25330342 -95927188 - MLT1A1 LTR MaLR -323 85 1 6 778 791 188 20 20 chr12 25330477 25330624 -95926906 + B1_Mur2 SINE Alu 2 148 -1 6 778 348 321 11 33 chr12 25331391 25331526 -95926004 + PB1D7 SINE Alu 10 138 -11 6 778 1041 105 0 0 chr12 25331526 25331679 -95925851 + (GAAAA)n Simple_repeat Simple_repeat 2 154 0 6 778 270 239 0 0 chr12 25331692 25331759 -95925771 + L1ME3A LINE L1 5683 5749 -413 6 778 819 252 47 40 chr12 25331800 25332045 -95925485 + B4 SINE B4 1 292 0 6 778 429 263 130 54 chr12 25332103 25332380 -95925150 + L1ME3A LINE L1 5863 6160 -13 6 778 232 373 18 0 chr12 25332571 25332681 -95924849 + L1MC LINE L1 5764 5875 -2007 6 778 222 37 0 0 chr12 25334066 25334093 -95923437 + (CG)n Simple_repeat Simple_repeat 1 27 0 6 778 315 0 0 0 chr12 25334120 25334155 -95923375 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 778 1038 94 0 28 chr12 25334207 25334349 -95923181 - B1_Mus1 SINE Alu -10 138 1 6 778 870 244 28 80 chr12 25334351 25334601 -95922929 - B4 SINE B4 -42 250 14 6 778 546 57 0 0 chr12 25334684 25334754 -95922776 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 778 243 286 118 76 chr12 25334790 25334934 -95922596 - MLT1A0 LTR MaLR -179 186 37 6 778 218 171 0 0 chr12 25335268 25335303 -95922227 + (CCTG)n Simple_repeat Simple_repeat 1 35 0 6 778 29 84 0 0 chr12 25336175 25336246 -95921284 + GC_rich Low_complexity Low_complexity 1 71 0 6 778 234 351 0 0 chr12 25338041 25338118 -95919412 - ID4_ SINE ID 0 83 7 6 778 286 91 29 29 chr12 25338149 25338217 -95919313 + (TTTTTG)n Simple_repeat Simple_repeat 6 73 0 6 778 1674 119 33 179 chr12 25340654 25341074 -95916456 - RLTR15 LTR ERVK 0 359 1 6 778 438 286 79 24 chr12 25342180 25342194 -95915336 - B3A SINE B2 -2 196 185 6 778 679 176 61 75 chr12 25342194 25342341 -95915189 - B1_Mur3 SINE Alu 0 149 5 6 778 438 289 78 23 chr12 25342341 25342511 -95915019 - B3A SINE B2 -14 184 1 6 778 1057 226 159 11 chr12 25343834 25344118 -95913412 + MTE2b LTR MaLR 49 357 -2 6 778 490 266 157 16 chr12 25344264 25344455 -95913075 + ID_B1 SINE B4 5 222 -2 6 778 795 165 68 0 chr12 25344536 25344669 -95912861 + B1_Mur2 SINE Alu 3 144 -5 6 778 357 116 0 0 chr12 25345531 25345600 -95911930 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 778 27 29 0 0 chr12 25345762 25345796 -95911734 + AT_rich Low_complexity Low_complexity 1 34 0 6 778 1270 41 0 0 chr12 25347802 25347949 -95909581 + B1_Mus2 SINE Alu 1 147 0 6 778 436 146 22 0 chr12 25348522 25348611 -95908919 + (TA)n Simple_repeat Simple_repeat 2 92 0 6 778 892 143 0 63 chr12 25348734 25348876 -95908654 - B1_Mus1 SINE Alu -14 134 2 6 778 596 268 91 32 chr12 25349033 25349187 -95908343 + RSINE1 SINE B4 3 165 0 6 778 225 245 223 34 chr12 25351210 25351358 -95906172 - MIR3 SINE MIR -23 185 10 6 778 244 227 67 0 chr12 25351470 25351545 -95905985 + MER5A1 DNA MER1_type 32 111 -55 6 778 544 282 16 8 chr12 25353041 25353166 -95904364 - RSINE1 SINE B4 -38 127 2 6 778 232 304 58 0 chr12 25353180 25353249 -95904281 - ID4_ SINE ID -10 73 1 6 778 563 243 14 0 chr12 25353339 25353483 -95904047 - B1F2 SINE Alu -2 147 2 6 778 297 136 0 0 chr12 25353579 25353645 -95903885 + (A)n Simple_repeat Simple_repeat 1 66 0 6 778 2920 94 0 48 chr12 25353701 25354138 -95903392 - L1Md_F2 LINE L1 -1 6581 6166 6 778 907 25 8 8 chr12 25354237 25354356 -95903174 + (GGGA)n Simple_repeat Simple_repeat 3 121 0 6 778 229 338 153 13 chr12 25354722 25354837 -95902693 - MIRm SINE MIR -68 208 81 6 778 1148 64 13 0 chr12 25354837 25354994 -95902536 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 6 778 229 338 153 13 chr12 25354994 25355028 -95902502 - MIRm SINE MIR -196 80 39 6 778 4326 40 4 0 chr12 25355198 25355699 -95901831 + RLTR1C LTR ERV1 1 503 0 6 778 252 234 0 0 chr12 25355699 25355733 -95901797 + B1F1 SINE Alu 14 47 -102 6 778 996 129 103 12 chr12 25355733 25355926 -95901604 + B2_Mm2 SINE B2 2 214 -2 6 778 317 243 29 0 chr12 25355982 25356052 -95901478 + MLT1A0 LTR MaLR 282 353 -12 6 778 717 260 51 28 chr12 25356781 25356995 -95900535 - B4A SINE B4 -73 219 1 6 778 1503 264 45 126 chr12 25357076 25357721 -95899809 + MT2B LTR ERVL 1 593 -8 6 778 993 154 86 0 chr12 25357752 25357927 -95899603 + B2_Mm2 SINE B2 3 192 -3 6 778 518 271 57 8 chr12 25357932 25358055 -95899475 + B3A SINE B2 27 155 -43 6 778 375 60 0 0 chr12 25358067 25358117 -95899413 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 778 693 250 0 0 chr12 25358138 25358270 -95899260 + ID_B1 SINE B4 84 215 -9 6 778 565 248 40 54 chr12 25358270 25358287 -95899243 + B1F1 SINE Alu 3 149 0 6 778 437 272 170 38 chr12 25358426 25358797 -95898733 - L1MB3 LINE L1 -130 6053 5634 6 778 227 333 7 83 chr12 25359574 25359718 -95897812 + RMER12 LTR ERVK 712 844 -478 6 778 235 333 10 0 chr12 25360086 25360182 -95897348 - L1ME3 LINE L1 -232 5930 5834 6 778 243 0 0 0 chr12 25360233 25360260 -95897270 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 6 778 26 50 0 0 chr12 25360266 25360306 -95897224 + AT_rich Low_complexity Low_complexity 1 40 0 6 778 808 218 0 7 chr12 25360756 25360899 -95896631 - B1F2 SINE Alu -7 142 1 6 778 1095 173 0 2 chr12 25361506 25362026 -95895504 + (CA)n Simple_repeat Simple_repeat 1 518 0 6 778 585 0 0 0 chr12 25362203 25362268 -95895262 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 778 1378 99 0 6 chr12 25362891 25363073 -95894457 + B2_Mm2 SINE B2 1 181 -14 6 778 1217 36 0 0 chr12 25363105 25363242 -95894288 + B1_Mus1 SINE Alu 2 138 -10 6 778 919 141 0 14 chr12 25363723 25363867 -95893663 - B1_Mur4 SINE Alu 0 150 9 6 778 221 318 0 77 chr12 25366062 25366205 -95891325 + G-rich Low_complexity Low_complexity 1 132 0 6 778 223 262 0 24 chr12 25366576 25366658 -95890872 + GA-rich Low_complexity Low_complexity 1 80 0 6 778 462 269 7 69 chr12 25367738 25367882 -95889648 + ID_B1 SINE B4 87 221 -3 6 778 784 190 0 12 chr12 25368032 25368182 -95889348 - B1_Mur1 SINE Alu 0 149 5 6 778 1256 229 201 8 chr12 25368292 25368443 -95889087 + MTC LTR MaLR 1 192 -229 6 778 2110 111 149 0 chr12 25368443 25368785 -95888745 + ORR1B1 LTR MaLR 2 394 0 6 778 1256 229 201 8 chr12 25368785 25368986 -95888544 + MTC LTR MaLR 193 420 -1 6 778 321 241 47 3 chr12 25369031 25369118 -95888412 + B1F1 SINE Alu 3 95 -54 6 778 435 19 0 0 chr12 25369165 25369217 -95888313 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 778 953 204 51 28 chr12 25369601 25369818 -95887712 - ID_B1 SINE B4 -1 223 2 6 778 934 183 16 36 chr12 25370485 25370678 -95886852 + RLTR31A_Mm LTR ERVK 115 303 -281 6 778 619 201 13 0 chr12 25370678 25370827 -95886703 + GA-rich Low_complexity Low_complexity 2 152 0 6 778 3399 122 23 8 chr12 25371603 25372121 -95885409 + RLTR20A2 LTR ERVK 2 527 -51 6 778 775 196 75 50 chr12 25372184 25372383 -95885147 + MTE2a LTR MaLR 172 375 -4 6 778 514 269 0 0 chr12 25373046 25373150 -95884380 - PB1D10 SINE Alu -11 106 3 6 778 27 29 0 0 chr12 25373157 25373191 -95884339 + AT_rich Low_complexity Low_complexity 1 34 0 6 778 1272 48 0 0 chr12 25373199 25373346 -95884184 + B1_Mus2 SINE Alu 1 147 0 6 778 452 48 434 0 chr12 25373368 25373451 -95884079 - B2_Mm2 SINE B2 -30 165 47 6 778 1338 79 11 0 chr12 25373479 25373656 -95883874 - B2_Mm1t SINE B2 -14 179 1 6 778 28 0 0 0 chr12 25373734 25373762 -95883768 + AT_rich Low_complexity Low_complexity 1 28 0 6 778 22 0 0 0 chr12 25373780 25373802 -95883728 + AT_rich Low_complexity Low_complexity 1 22 0 6 778 572 287 0 47 chr12 25373802 25373974 -95883556 - RSINE1 SINE B4 -1 164 1 6 778 273 298 10 31 chr12 25374222 25374319 -95883211 + MLT1A LTR MaLR 265 359 -15 6 778 418 280 0 78 chr12 25374376 25374423 -95883107 + MER58A DNA MER1_type 1 45 -179 6 778 1689 31 0 0 chr12 25374423 25374615 -95882915 - B2_Mm1a SINE B2 -1 192 1 6 778 418 280 0 78 chr12 25374615 25374695 -95882835 + MER58A DNA MER1_type 46 118 -106 6 778 225 329 111 73 chr12 25374634 25374765 -95882765 + YREP_Mm Unknown Unknown 40 188 -1624 6 778 306 67 0 0 chr12 25374765 25374810 -95882720 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 6 778 225 329 111 73 chr12 25374810 25374993 -95882537 + YREP_Mm Unknown Unknown 189 366 -1446 6 778 327 291 0 44 chr12 25375311 25375401 -95882129 + RSINE1 SINE B4 2 87 -78 6 778 188 148 0 0 chr12 25375509 25375536 -95881994 - MIRm SINE MIR -164 112 86 6 778 3510 0 0 0 chr12 25376427 25376808 -95880722 + L1Md_A LINE L1 6202 6582 0 6 778 2108 124 12 38 chr12 25376946 25377290 -95880240 + IAPLTR1a_Mm LTR ERVK 1 335 -2 6 778 10844 106 110 26 chr12 25377299 25379431 -95878099 + IAPEz-int LTR ERVK 35 2345 -4136 6 778 369 107 0 0 chr12 25379430 25379486 -95878044 + IAPEz-int LTR ERVK 2719 2774 -3707 6 778 2944 28 0 0 chr12 25379484 25379841 -95877689 + IAPEz-int LTR ERVK 4001 4357 -2124 6 778 5681 64 13 18 chr12 25379832 25380607 -95876923 + IAPEz-int LTR ERVK 5709 6479 -2 6 778 2115 109 12 39 chr12 25380609 25380944 -95876586 + IAPLTR1a_Mm LTR ERVK 1 326 -11 6 778 1035 248 19 0 chr12 25381032 25381238 -95876292 - B3 SINE B2 -5 211 2 6 778 499 239 94 0 chr12 25381578 25381695 -95875835 + ID_B1 SINE B4 6 133 -91 6 778 318 224 0 0 chr12 25381807 25381865 -95875665 + PB1D9 SINE Alu 46 103 -17 6 778 296 302 101 62 chr12 25382310 25382568 -95874962 - ORR1D2 LTR MaLR -17 353 86 7 778 629 274 119 16 chr12 25383098 25383160 -95874370 + ID_B1 SINE B4 9 140 -152 7 778 398 279 53 80 chr12 25383160 25383273 -95874257 + PB1D10 SINE Alu 2 111 -6 7 778 629 274 119 16 chr12 25383273 25383320 -95874210 + ID_B1 SINE B4 141 245 -47 7 778 2713 149 112 12 chr12 25383683 25384166 -95873364 - RMER2 LTR ERV1 0 567 37 7 778 324 98 371 37 chr12 25384186 25384291 -95873239 - B2_Mm2 SINE B2 -7 188 49 7 778 1061 121 97 0 chr12 25384321 25384486 -95873044 - B2_Mm2 SINE B2 -14 181 1 7 778 401 42 0 0 chr12 25384487 25384535 -95872995 - RMER2 LTR ERV1 -519 48 1 7 778 2568 161 5 5 chr12 25385121 25385539 -95871991 - MTC LTR MaLR 0 421 4 7 778 424 233 189 35 chr12 25385656 25385825 -95871705 + B3A SINE B2 4 198 0 7 778 1632 200 103 24 chr12 25385885 25386264 -95871266 + MTD LTR MaLR 11 419 0 7 778 1207 54 0 7 chr12 25386413 25386562 -95870968 - B1_Mus1 SINE Alu 0 148 1 7 778 913 164 29 29 chr12 25386589 25386759 -95870771 + B2_Mm2 SINE B2 12 181 -14 7 778 1224 41 0 20 chr12 25386780 25386929 -95870601 + B1_Mus2 SINE Alu 2 147 0 7 778 668 238 7 37 chr12 25387280 25387415 -95870115 - B1_Mur1 SINE Alu -11 138 8 7 778 414 96 229 0 chr12 25388601 25388684 -95868846 + B3 SINE B2 80 181 -35 7 778 1222 41 0 7 chr12 25388713 25388859 -95868671 + B1_Mm SINE Alu 1 145 -2 7 778 595 202 126 0 chr12 25388903 25389022 -95868508 + B1_Mus1 SINE Alu 12 145 -3 7 778 468 0 0 0 chr12 25389054 25389106 -95868424 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 778 1213 69 0 0 chr12 25389487 25389632 -95867898 + B1_Mus2 SINE Alu 1 145 -2 7 778 21 0 0 0 chr12 25389632 25389653 -95867877 + AT_rich Low_complexity Low_complexity 1 21 0 7 778 221 189 0 0 chr12 25389674 25389711 -95867819 + ID SINE ID 51 87 -137 7 778 567 277 0 41 chr12 25389742 25389889 -95867641 + ID_B1 SINE B4 84 224 0 7 778 21 0 0 0 chr12 25389890 25389911 -95867619 + AT_rich Low_complexity Low_complexity 1 21 0 7 778 829 163 233 0 chr12 25389924 25390096 -95867434 + B3 SINE B2 5 216 0 7 778 683 213 71 0 chr12 25390122 25390249 -95867281 + B1_Mur1 SINE Alu 1 136 -13 7 778 358 299 159 7 chr12 25390638 25390776 -95866754 - B3 SINE B2 -57 159 1 7 778 210 274 104 125 chr12 25390772 25390800 -95866730 - B4A SINE B4 -47 245 172 7 778 535 228 65 8 chr12 25390800 25390924 -95866606 - B1_Mur1 SINE Alu -5 144 14 7 778 210 274 104 125 chr12 25390924 25390964 -95866566 - B4A SINE B4 -47 171 58 7 778 215 238 0 0 chr12 25390956 25390998 -95866532 - PB1D9 SINE Alu -77 43 2 7 778 712 187 71 14 chr12 25391136 25391277 -95866253 - B1_Mur2 SINE Alu 0 149 1 7 778 286 303 29 29 chr12 25391330 25391432 -95866098 + RSINE1 SINE B4 29 130 -35 7 778 215 379 11 0 chr12 25391497 25391584 -95865946 + MIRc SINE MIR 83 170 -98 7 778 255 229 165 24 chr12 25392142 25392227 -95865303 + ID_B1 SINE B4 10 106 -118 7 778 21 57 0 0 chr12 25392950 25392985 -95864545 + GC_rich Low_complexity Low_complexity 1 35 0 7 778 326 281 98 38 chr12 25395009 25395142 -95862388 - B1F2 SINE Alu -7 142 2 7 778 542 265 55 80 chr12 25395618 25395819 -95861711 + B3 SINE B2 1 196 -20 7 778 1205 48 14 0 chr12 25395835 25395981 -95861549 + B1_Mus1 SINE Alu 1 148 0 7 778 483 254 83 23 chr12 25396778 25396911 -95860619 - B3A SINE B2 -48 150 10 7 778 230 283 133 0 chr12 25396917 25396977 -95860553 - ID2 SINE ID -14 69 2 7 778 265 301 105 19 chr12 25397288 25397302 -95860228 - B4 SINE B4 -94 198 89 7 778 414 233 35 11 chr12 25397302 25397389 -95860141 - PB1D7 SINE Alu -29 91 3 7 778 366 91 18 0 chr12 25398675 25398730 -95858800 - B1_Mm SINE Alu 0 147 92 7 778 260 236 73 0 chr12 25399307 25399362 -95858168 - ID_B1 SINE B4 -58 166 108 7 778 704 145 94 31 chr12 25401163 25401291 -95856239 - B1_Mur2 SINE Alu -8 141 6 7 778 630 0 0 0 chr12 25402966 25403036 -95854494 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 778 634 198 0 5 chr12 25403112 25403231 -95854299 - B1_Mur1 SINE Alu -7 113 1 7 778 1453 224 26 82 chr12 25403424 25403803 -95853727 - MTE2a LTR MaLR -18 361 4 7 778 263 80 40 0 chr12 25403882 25403932 -95853598 + (TTTG)n Simple_repeat Simple_repeat 4 55 0 7 778 257 163 6 111 chr12 25403935 25404019 -95853511 - B1_Mus2 SINE Alu 0 147 44 7 778 474 280 160 55 chr12 25404034 25404234 -95853296 - ID_B1 SINE B4 -2 222 2 7 778 276 304 69 60 chr12 25404282 25404499 -95853031 - L1M7 LINE L1 -5324 894 676 7 778 224 186 17 0 chr12 25404600 25404659 -95852871 + CT-rich Low_complexity Low_complexity 2 61 0 7 778 306 298 89 34 chr12 25404666 25404812 -95852718 - HAL1-3A_ME LINE L1 -420 2438 2285 7 778 645 190 24 0 chr12 25404820 25405076 -95852454 + CT-rich Low_complexity Low_complexity 1 262 0 7 778 379 175 0 0 chr12 25405773 25405836 -95851694 - ID4_ SINE ID -16 67 5 7 778 23 43 0 21 chr12 25406035 25406067 -95851463 + AT_rich Low_complexity Low_complexity 1 32 0 7 778 882 132 20 20 chr12 25406067 25406214 -95851316 - B1_Mus2 SINE Alu 0 147 1 7 778 23 43 0 21 chr12 25406214 25406229 -95851301 + AT_rich Low_complexity Low_complexity 1 15 0 7 778 1396 63 348 7 chr12 25406234 25406521 -95851009 - MTB LTR MaLR 0 400 16 7 778 630 0 0 0 chr12 25406545 25406615 -95850915 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 778 770 213 48 46 chr12 25406631 25406833 -95850697 - B3A SINE B2 -11 205 1 7 778 313 322 212 26 chr12 25406836 25407289 -95850241 - L1ME1 LINE L1 -258 5921 5385 7 778 1748 108 31 1 chr12 25407305 25407571 -95849959 + MTC LTR MaLR 10 322 -99 7 778 1090 98 13 13 chr12 25407572 25407727 -95849803 - B2_Mm2 SINE B2 -31 164 10 7 778 296 264 21 42 chr12 25408273 25408368 -95849162 - MTEa LTR MaLR -34 345 253 7 778 198 299 91 0 chr12 25409240 25409317 -95848213 + MIRc SINE MIR 83 166 -102 7 778 2927 58 16 8 chr12 25409660 25410043 -95847487 - RLTR10 LTR ERVK -4 386 1 7 778 13414 25 4 0 chr12 25410045 25412054 -95845476 - RLTR10-int LTR ERVK -3 1984 41 7 778 2927 58 16 8 chr12 25412070 25412453 -95845077 - RLTR10 LTR ERVK -4 386 1 7 778 769 274 94 44 chr12 25412455 25412818 -95844712 + Tigger9b DNA MER2_type 46 426 -198 7 778 445 284 0 29 chr12 25412841 25412931 -95844599 - B3 SINE B2 -99 117 29 7 778 893 165 0 0 chr12 25412931 25413064 -95844466 + B1_Mur4 SINE Alu 5 137 -13 7 778 258 32 0 0 chr12 25413064 25413095 -95844435 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 7 778 445 284 0 29 chr12 25413095 25413108 -95844422 - B3 SINE B2 -188 28 17 7 778 386 207 256 8 chr12 25413110 25413203 -95844327 + B1_Mus1 SINE Alu 2 116 -32 7 778 477 0 0 0 chr12 25413203 25413256 -95844274 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 778 386 207 256 8 chr12 25413256 25413279 -95844251 + B1_Mus1 SINE Alu 117 146 -2 7 778 1145 89 0 7 chr12 25413282 25413429 -95844101 + B1_Mus1 SINE Alu 2 147 -1 7 778 230 244 0 0 chr12 25413463 25413508 -95844022 - B3A SINE B2 -152 46 2 7 778 569 14 14 0 chr12 25413585 25413655 -95843875 + (TC)n Simple_repeat Simple_repeat 2 72 0 7 778 1187 266 106 3 chr12 25413875 25414215 -95843315 + MTEa LTR MaLR 1 375 -4 7 778 1163 68 0 0 chr12 25414757 25414904 -95842626 - B1_Mm SINE Alu 0 147 1 7 778 180 0 0 0 chr12 25415011 25415031 -95842499 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 778 1070 89 0 0 chr12 25415032 25415167 -95842363 - B1_Mus1 SINE Alu -13 135 1 7 778 1261 54 0 0 chr12 25415176 25415323 -95842207 - B1_Mm SINE Alu 0 147 1 7 778 226 241 0 0 chr12 25415432 25415490 -95842040 + T-rich Low_complexity Low_complexity 1 58 0 7 778 2452 75 3 0 chr12 25415594 25415912 -95841618 + ORR1A2 LTR MaLR 1 319 -8 7 778 335 277 61 26 chr12 25416089 25416204 -95841326 + L1MC5 LINE L1 7679 7797 -164 7 778 281 253 102 11 chr12 25416356 25416444 -95841086 + MER119 DNA MER1_type 24 119 -464 7 778 225 0 0 0 chr12 25416548 25416573 -95840957 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 778 435 94 0 5 chr12 25416588 25416653 -95840877 - B2_Mm2 SINE B2 -107 109 47 7 778 1335 107 6 0 chr12 25416680 25416858 -95840672 - B2_Mm1t SINE B2 -14 179 1 7 778 249 33 0 0 chr12 25417362 25417392 -95840138 - B3A SINE B2 -164 34 5 7 778 186 180 19 57 chr12 25417581 25417634 -95839896 + L3 LINE CR1 170 220 -4269 7 778 355 368 36 30 chr12 25417624 25417792 -95839738 + MIRc SINE MIR 20 188 -80 7 778 874 182 14 0 chr12 25418272 25418420 -95839110 + B1_Mur4 SINE Alu 1 150 0 7 778 582 265 93 62 chr12 25418484 25418740 -95838790 - B4 SINE B4 -18 274 49 7 778 344 40 20 0 chr12 25418761 25418811 -95838719 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 7 778 254 250 69 62 chr12 25418825 25418970 -95838560 - L1M4 LINE L1 -376 5802 5657 7 778 291 54 0 0 chr12 25419108 25419145 -95838385 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 7 778 438 132 0 0 chr12 25419249 25419325 -95838205 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 778 311 307 15 205 chr12 25419377 25419582 -95837948 - B4A SINE B4 -126 166 1 7 778 673 254 71 15 chr12 25419594 25419790 -95837740 - ID_B1 SINE B4 -13 211 5 7 778 267 316 110 32 chr12 25420175 25420329 -95837201 + MIRb SINE MIR 37 202 -66 7 778 708 168 299 18 chr12 25420596 25420760 -95836770 - B3 SINE B2 -6 210 1 7 778 744 12 0 0 chr12 25420937 25421022 -95836508 + (TTCCC)n Simple_repeat Simple_repeat 4 88 0 7 778 214 311 0 32 chr12 25421023 25421086 -95836444 + polypyrimidine Low_complexity Low_complexity 1 61 0 7 778 189 0 0 0 chr12 25421089 25421110 -95836420 + (TCCC)n Simple_repeat Simple_repeat 3 23 0 7 778 574 218 36 0 chr12 25421113 25421223 -95836307 - B4 SINE B4 -82 210 97 8 778 242 216 0 98 chr12 25421157 25421239 -95836291 - MT2B LTR ERVL -365 236 163 8 778 221 205 0 43 chr12 25421265 25421311 -95836219 - RSINE1 SINE B4 -69 96 53 8 778 212 196 261 0 chr12 25421282 25421328 -95836202 - B4 SINE B4 -212 80 23 8 778 594 289 77 0 chr12 25421421 25421577 -95835953 - MTD LTR MaLR -216 203 36 8 778 220 182 23 0 chr12 25421685 25421729 -95835801 - MIRb SINE MIR -71 197 153 8 778 1008 141 44 22 chr12 25421966 25422148 -95835382 - B2_Mm2 SINE B2 -9 186 1 8 778 1175 75 0 0 chr12 25422404 25422550 -95834980 - B1_Mus1 SINE Alu 0 148 3 8 778 252 77 0 0 chr12 25422605 25422644 -95834886 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 8 778 1149 103 7 0 chr12 25422763 25422918 -95834612 + B2_Mm2 SINE B2 2 157 -38 8 778 261 0 0 0 chr12 25422918 25422947 -95834583 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 8 778 881 214 4 119 chr12 25423145 25423311 -95834219 + B3 SINE B2 1 156 -60 8 778 468 0 0 0 chr12 25423311 25423363 -95834167 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 778 881 214 4 119 chr12 25423363 25423440 -95834090 + B3 SINE B2 157 216 0 8 778 253 341 24 0 chr12 25423688 25423773 -95833757 - L2c LINE L2 -196 3191 3105 8 778 1332 102 43 0 chr12 25424106 25424293 -95833237 + B2_Mm2 SINE B2 1 195 0 8 778 442 263 58 43 chr12 25425129 25425268 -95832262 - B1F SINE Alu 0 149 9 8 778 315 0 0 0 chr12 25425291 25425326 -95832204 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 778 854 256 34 0 chr12 25425329 25425505 -95832025 - B3 SINE B2 -28 188 7 8 778 6667 70 18 3 chr12 25425529 25426447 -95831083 + L1_Mus4 LINE L1 5723 6636 0 8 778 1058 99 105 0 chr12 25426541 25426703 -95830827 + B2_Mm1t SINE B2 1 179 -14 8 778 372 89 321 9 chr12 25426751 25426863 -95830667 + B2_Mm2 SINE B2 47 193 -2 8 778 233 282 93 12 chr12 25426866 25426952 -95830578 - MIR SINE MIR -138 124 32 8 97 852 170 43 0 chr12 25427958 25428099 -95829431 + B1_Mus1 SINE Alu 2 148 0 8 779 258 316 47 93 chr12 25428619 25428748 -95828782 + ID_B1 SINE B4 16 138 -86 8 779 400 245 61 61 chr12 25429651 25429685 -95827845 + B1F SINE Alu 1 35 -114 8 779 3961 93 94 7 chr12 25429685 25430238 -95827292 - MT2B LTR ERVL 0 601 1 8 779 400 245 61 61 chr12 25430238 25430351 -95827179 + B1F SINE Alu 36 147 -2 8 779 253 292 62 0 chr12 25430357 25430422 -95827108 + ID4_ SINE ID 1 69 -14 8 779 29 47 0 0 chr12 25430853 25430896 -95826634 + AT_rich Low_complexity Low_complexity 1 43 0 8 779 958 40 0 0 chr12 25430961 25431085 -95826445 - L1Md_A LINE L1 0 6582 6459 8 779 189 342 66 33 chr12 25432305 25432426 -95825104 - MIRb SINE MIR -10 258 134 8 779 309 118 0 0 chr12 25432526 25432577 -95824953 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 779 360 315 65 82 chr12 25432583 25432877 -95824653 - B4 SINE B4 0 292 4 8 779 917 118 7 40 chr12 25433863 25434013 -95823517 + B1_Mur4 SINE Alu 6 150 0 8 779 282 73 0 0 chr12 25434146 25434187 -95823343 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 779 1715 26 0 0 chr12 25434578 25434770 -95822760 + B2_Mm1a SINE B2 2 193 0 8 779 837 210 67 22 chr12 25435373 25435553 -95821977 - ID_B1 SINE B4 0 224 37 8 779 883 136 21 0 chr12 25435553 25435693 -95821837 + ORR1A4 LTR MaLR 1 143 -186 8 779 1027 106 33 0 chr12 25435678 25435829 -95821701 - ORR1A4 LTR MaLR -8 321 166 8 779 762 160 269 0 chr12 25435876 25436051 -95821479 - URR1A DNA MER1_type -4 222 1 8 779 852 232 17 28 chr12 25436062 25436291 -95821239 + MTD LTR MaLR 1 208 -213 8 779 1222 134 8 118 chr12 25436336 25436407 -95821123 + RLTR33 LTR ERVK 395 453 -225 8 779 1430 62 0 6 chr12 25436407 25436585 -95820945 + B2_Mm2 SINE B2 5 181 -14 8 779 1222 134 8 118 chr12 25436585 25436750 -95820780 + RLTR33 LTR ERVK 454 605 -73 8 779 330 234 98 30 chr12 25436702 25436834 -95820696 + MTD LTR MaLR 279 419 0 8 779 191 318 45 0 chr12 25437187 25437275 -95820255 + MIR SINE MIR 47 138 -70 8 779 821 125 0 8 chr12 25437434 25437563 -95819967 - B1_Mur4 SINE Alu -1 149 22 8 779 582 240 118 39 chr12 25437583 25437761 -95819769 - B3A SINE B2 -3 195 4 8 779 435 217 3 197 chr12 25437767 25437845 -95819685 - B1_Mm SINE Alu -2 145 83 8 779 3017 22 191 0 chr12 25437845 25438211 -95819319 - RLTR10C LTR ERVK 0 436 1 8 779 435 200 0 191 chr12 25438211 25438310 -95819220 - B1_Mm SINE Alu -65 82 3 8 779 219 125 0 0 chr12 25438559 25438599 -95818931 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 779 390 327 126 30 chr12 25438609 25438871 -95818659 - B4A SINE B4 -4 288 2 8 779 1137 176 18 31 chr12 25438918 25439147 -95818383 + URR1A DNA MER1_type 1 226 0 8 779 516 274 111 34 chr12 25440169 25440377 -95817153 - ID_B1 SINE B4 0 224 1 8 779 488 213 61 76 chr12 25440402 25440534 -95816996 - ID_B1 SINE B4 -18 206 77 8 779 233 279 76 0 chr12 25440583 25440662 -95816868 - MLT1A LTR MaLR -48 326 242 8 779 1326 71 0 0 chr12 25440686 25440845 -95816685 + B2_Mm1a SINE B2 1 159 -34 8 779 252 77 0 0 chr12 25440845 25440884 -95816646 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 8 779 324 0 0 0 chr12 25441072 25441108 -95816422 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 779 243 0 0 0 chr12 25441108 25441135 -95816395 + (T)n Simple_repeat Simple_repeat 1 27 0 8 779 1279 27 0 0 chr12 25441142 25441288 -95816242 - B1_Mus2 SINE Alu -1 146 1 8 779 252 0 0 0 chr12 25441711 25441739 -95815791 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 8 779 443 63 16 0 chr12 25442038 25442101 -95815429 + (TA)n Simple_repeat Simple_repeat 2 65 0 8 779 829 281 17 0 chr12 25442101 25442279 -95815251 - B3A SINE B2 -17 181 1 8 779 1654 32 5 0 chr12 25442676 25442866 -95814664 - B2_Mm1t SINE B2 -2 191 1 8 779 558 79 0 0 chr12 25443950 25444026 -95813504 + (TA)n Simple_repeat Simple_repeat 2 77 0 8 779 353 314 10 21 chr12 25444184 25444304 -95813226 - PB1D7 SINE Alu -2 125 7 8 779 272 156 29 59 chr12 25444633 25444701 -95812829 - B1_Mur2 SINE Alu -56 93 28 8 779 486 200 267 0 chr12 25444723 25444888 -95812642 - ID_B1 SINE B4 -14 210 2 8 779 3533 207 84 75 chr12 25445936 25446295 -95811235 + RMER12 LTR ERVK 1 317 -1005 8 779 1014 72 65 0 chr12 25446295 25446433 -95811097 - B1_Mus1 SINE Alu 0 148 2 8 779 3533 207 84 75 chr12 25446433 25446881 -95810649 + RMER12 LTR ERVK 318 767 -555 8 779 303 93 0 0 chr12 25446881 25446924 -95810606 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 8 779 3533 204 135 57 chr12 25446924 25447442 -95810088 + RMER12 LTR ERVK 768 1122 -200 8 779 947 203 48 29 chr12 25447674 25447882 -95809648 + B3 SINE B2 1 212 -4 8 779 1553 67 0 0 chr12 25448300 25448493 -95809037 - B2_Mm1t SINE B2 0 193 1 8 779 672 288 44 14 chr12 25448584 25448894 -95808636 + MER2 DNA MER2_type 9 345 0 8 779 1074 328 99 26 chr12 25448995 25449658 -95807872 - FordPrefect DNA Tip100 -40 1643 932 8 779 526 167 85 34 chr12 25449910 25450028 -95807502 + MTC-int LTR MaLR 971 1094 -164 8 779 1354 207 89 39 chr12 25450040 25450376 -95807154 - RMER1C Other Other -8 1334 982 8 779 2992 185 115 22 chr12 25450377 25451126 -95806404 + RMER19B LTR ERVK 1 668 -234 8 779 743 300 33 77 chr12 25451143 25451611 -95805919 - RMER1C Other Other -346 996 187 8 779 2877 52 0 0 chr12 25451611 25451957 -95805573 - ORR1A1 LTR MaLR 0 346 1 8 779 3448 33 2 0 chr12 25451959 25452354 -95805176 - MTA_Mm LTR MaLR 0 396 1 8 779 514 302 60 133 chr12 25452354 25452490 -95805040 - RMER1C Other Other -1156 186 53 8 779 852 116 57 19 chr12 25452893 25453051 -95804479 - B2_Mm2 SINE B2 -12 183 20 8 779 235 86 29 0 chr12 25453053 25453088 -95804442 + RMER1C Other Other 219 254 -1088 8 779 433 218 18 0 chr12 25453216 25453326 -95804204 + MTC-int LTR MaLR 1147 1258 0 8 779 834 141 0 21 chr12 25453326 25453471 -95804059 + MTC LTR MaLR 1 142 -279 8 779 264 0 0 159 chr12 25453478 25453610 -95803920 + (CAAGG)n Simple_repeat Simple_repeat 3 113 0 8 779 614 132 9 19 chr12 25453610 25453718 -95803812 + B1_Mur3 SINE Alu 43 149 0 8 779 261 98 0 0 chr12 25453748 25453789 -95803741 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 779 432 364 104 8 chr12 25453934 25454175 -95803355 - FordPrefect DNA Tip100 -1410 273 10 8 779 198 0 0 0 chr12 25454361 25454383 -95803147 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 779 53 30 0 0 chr12 25454396 25454463 -95803067 + AT_rich Low_complexity Low_complexity 1 67 0 8 779 986 215 24 10 chr12 25454470 25454677 -95802853 - B3 SINE B2 -6 210 1 8 779 233 29 29 0 chr12 25454916 25454950 -95802580 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 779 1167 44 0 0 chr12 25454951 25455086 -95802444 - B1_Mm SINE Alu -12 135 1 8 779 1251 47 0 0 chr12 25455312 25455460 -95802070 + B1_Mus1 SINE Alu 1 148 0 8 779 449 268 191 9 chr12 25455813 25456043 -95801487 - B4A SINE B4 -20 272 1 8 779 471 278 216 24 chr12 25457088 25457342 -95800188 - ORR1E LTR MaLR -4 355 53 8 779 526 262 79 5 chr12 25457354 25457557 -95799973 + RMER15 LTR ERVL 341 558 -17 8 779 266 281 144 58 chr12 25457702 25457876 -95799654 - Tigger7 DNA MER2_type -5 2486 2298 8 779 749 272 159 8 chr12 25458110 25458362 -95799168 + B4A SINE B4 1 290 -2 8 779 425 19 19 0 chr12 25458367 25458421 -95799109 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 779 1091 43 63 28 chr12 25459103 25459232 -95798298 + B1_Mus1 SINE Alu 1 138 -10 8 779 243 0 0 0 chr12 25459232 25459259 -95798271 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 779 1091 43 63 28 chr12 25459259 25459272 -95798258 + B1_Mus1 SINE Alu 139 148 0 8 779 1201 66 18 0 chr12 25459376 25459543 -95797987 + B2_Mm2 SINE B2 26 195 0 8 779 198 0 0 0 chr12 25459915 25459937 -95797593 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 8 779 1155 48 14 0 chr12 25459941 25460087 -95797443 - B1_Mus1 SINE Alu 0 148 1 8 779 453 262 111 28 chr12 25460097 25460313 -95797217 - L1_Rod LINE L1 -752 5095 4862 8 779 317 295 34 20 chr12 25460463 25460602 -95796928 + MIR3 SINE MIR 24 160 -48 9 779 236 193 35 0 chr12 25460639 25460671 -95796859 + polypyrimidine Low_complexity Low_complexity 28 61 0 9 779 1196 55 0 0 chr12 25460671 25460817 -95796713 - B1_Mus2 SINE Alu -1 146 1 9 779 236 193 35 0 chr12 25460817 25460841 -95796689 + polypyrimidine Low_complexity Low_complexity 4 27 0 9 779 436 308 11 86 chr12 25460853 25461027 -95796503 - RSINE1 SINE B4 -2 163 3 9 779 189 0 0 0 chr12 25461037 25461058 -95796472 + (T)n Simple_repeat Simple_repeat 1 21 0 9 779 1112 43 14 0 chr12 25462370 25462509 -95795021 + B1_Mus2 SINE Alu 2 142 -5 9 779 2172 204 21 19 chr12 25462640 25463064 -95794466 - Lx5 LINE L1 -11 7039 6615 9 779 1595 31 10 5 chr12 25463076 25463268 -95794262 - B2_Mm1t SINE B2 0 193 1 9 779 261 292 33 58 chr12 25463271 25463391 -95794139 + MER31B LTR ERV1 48 164 -302 9 779 970 224 20 10 chr12 25463684 25463882 -95793648 + B3 SINE B2 1 200 -16 9 779 33 0 0 0 chr12 25464461 25464494 -95793036 + AT_rich Low_complexity Low_complexity 1 33 0 9 779 1738 154 57 27 chr12 25465188 25465522 -95792008 + RMER1B Other Other 711 1054 -12 9 779 304 191 36 45 chr12 25465812 25465922 -95791608 - MLT1B LTR MaLR -255 135 27 9 779 1079 215 5 5 chr12 25466177 25466392 -95791138 - B3 SINE B2 -1 215 1 9 779 183 42 0 0 chr12 25466766 25466790 -95790740 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 779 804 178 15 0 chr12 25466790 25466925 -95790605 - B1_Mur3 SINE Alu -10 139 3 9 779 246 105 0 0 chr12 25467910 25467948 -95789582 + (TTA)n Simple_repeat Simple_repeat 2 39 0 9 779 548 124 0 17 chr12 25467961 25468076 -95789454 + (TCTCTG)n Simple_repeat Simple_repeat 6 118 0 9 779 709 163 0 0 chr12 25468092 25468215 -95789315 - B1_Mur2 SINE Alu -26 123 1 9 779 333 305 0 25 chr12 25468816 25468937 -95788593 - LTR16E2 LTR ERVL -402 166 49 9 779 219 339 0 2 chr12 25469171 25469245 -95788285 + ID4 SINE ID 4 76 -76 9 779 1219 131 141 0 chr12 25470493 25470691 -95786839 - URR1A DNA MER1_type 0 226 1 9 779 252 0 0 0 chr12 25470937 25470965 -95786565 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 779 1321 201 83 38 chr12 25471180 25471552 -95785978 - MTD LTR MaLR -13 406 18 9 779 1294 62 84 0 chr12 25472067 25472227 -95785303 + B2_Mm1a SINE B2 1 175 -18 9 779 450 0 0 0 chr12 25472227 25472277 -95785253 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 9 779 1294 62 84 0 chr12 25472277 25472294 -95785236 + B2_Mm1a SINE B2 176 192 -1 9 779 567 0 0 0 chr12 25472680 25472743 -95784787 + (GA)n Simple_repeat Simple_repeat 2 64 0 9 779 2914 125 51 18 chr12 25473503 25474009 -95783521 - RLTR28 LTR ERVL -1 523 1 9 779 541 124 164 20 chr12 25474053 25474176 -95783354 + B1_Mus1 SINE Alu 4 143 -6 9 779 234 91 0 0 chr12 25474187 25474220 -95783310 + (TAA)n Simple_repeat Simple_repeat 2 34 0 9 779 1542 48 16 0 chr12 25474340 25474526 -95783004 + B2_Mm2 SINE B2 1 189 -6 9 779 287 176 10 81 chr12 25474647 25474746 -95782784 - LTR50 LTR ERVL -512 283 192 9 779 906 191 63 5 chr12 25475050 25475240 -95782290 + B3 SINE B2 15 215 -1 9 779 8613 70 7 4 chr12 25475254 25477071 -95780459 + L1_Mus1 LINE L1 4744 6567 0 9 779 212 239 40 40 chr12 25477813 25477887 -95779643 - BC1_Mm scRNA scRNA -56 96 23 9 779 293 314 27 54 chr12 25478071 25478182 -95779348 - PB1D10 SINE Alu -9 108 1 9 779 1902 149 19 65 chr12 25478212 25478642 -95778888 - RMER17C LTR ERVK 0 410 1 9 779 1096 215 133 0 chr12 25479291 25479561 -95777969 + ORR1D2 LTR MaLR 64 369 -1 9 779 227 319 88 0 chr12 25479885 25479976 -95777554 + MIRm SINE MIR 57 155 -121 9 779 441 0 0 0 chr12 25480325 25480374 -95777156 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 779 265 304 0 14 chr12 25480393 25480463 -95777067 - B4 SINE B4 -2 290 222 9 779 250 107 400 0 chr12 25480477 25480552 -95776978 - Lx9 LINE L1 0 7644 7540 9 779 486 0 0 0 chr12 25480573 25480627 -95776903 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 779 2410 116 34 5 chr12 25480642 25481050 -95776480 - RLTR9B LTR ERVK -17 420 1 9 779 4719 188 75 31 chr12 25481056 25481485 -95776045 - Lx9 LINE L1 -173 7471 7038 9 779 1082 75 0 26 chr12 25481485 25481496 -95776034 - B1_Mus1 SINE Alu -1 147 140 9 779 906 10 0 0 chr12 25481496 25481599 -95775931 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 9 779 1082 75 0 26 chr12 25481599 25481738 -95775792 - B1_Mus1 SINE Alu -9 139 1 9 779 4719 188 75 31 chr12 25481738 25482330 -95775200 - Lx9 LINE L1 -607 7037 6406 9 779 285 180 0 16 chr12 25482350 25482412 -95775118 - B4 SINE B4 -68 224 164 9 779 1111 143 22 11 chr12 25482412 25482596 -95774934 + B2_Mm2 SINE B2 1 186 -9 9 779 1214 81 6 0 chr12 25482599 25482772 -95774758 + B2_Mm2 SINE B2 1 174 -21 9 779 306 107 319 18 chr12 25482811 25482924 -95774606 + B2_Mm2 SINE B2 47 193 -2 9 779 317 246 202 0 chr12 25482920 25483034 -95774496 - B4 SINE B4 -115 177 41 9 779 261 0 0 0 chr12 25483980 25484009 -95773521 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 779 1296 27 0 0 chr12 25484037 25484184 -95773346 + B1_Mus2 SINE Alu 1 147 0 9 779 209 108 27 0 chr12 25484184 25484221 -95773309 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 9 779 222 231 14 71 chr12 25484616 25484686 -95772844 + ID4 SINE ID 2 67 -16 9 779 477 0 0 0 chr12 25484687 25484740 -95772790 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 779 351 228 164 17 chr12 25485368 25485484 -95772046 - ID_B1 SINE B4 0 224 92 9 779 670 230 22 0 chr12 25485583 25485718 -95771812 + B3 SINE B2 72 209 -7 9 779 366 198 12 24 chr12 25486132 25486215 -95771315 - ID_B1 SINE B4 0 224 143 9 779 1103 63 0 40 chr12 25486243 25486392 -95771138 + B1_Mus1 SINE Alu 5 147 -1 9 779 453 211 11 0 chr12 25486544 25486634 -95770896 - Lx8 LINE L1 -351 7122 7032 9 779 2103 248 100 10 chr12 25486692 25487303 -95770227 - Lx8 LINE L1 -400 7073 6408 9 779 579 203 128 0 chr12 25487303 25487436 -95770094 - ID_B1 SINE B4 -64 160 11 9 779 262 227 0 83 chr12 25487379 25487451 -95770079 - BC1_Mm scRNA scRNA -86 66 1 9 779 355 283 44 30 chr12 25487625 25487781 -95769749 - B1F SINE Alu 0 149 1 9 779 292 233 41 0 chr12 25487934 25488007 -95769523 - L1MB7 LINE L1 -9 6175 6100 9 779 290 174 0 0 chr12 25488081 25488127 -95769403 - B1F1 SINE Alu -9 140 95 9 779 1937 239 95 78 chr12 25488167 25489084 -95768446 - L1MB7 LINE L1 -70 6114 5148 9 779 1489 17 69 0 chr12 25489084 25489259 -95768271 + B2_Mm1a SINE B2 2 188 -5 9 779 679 218 30 131 chr12 25489259 25489308 -95768222 - L1MB7 LINE L1 -999 5147 5101 9 779 232 341 108 0 chr12 25489356 25489485 -95768045 + LTR48 LTR ERV1 6 148 -639 9 779 1865 124 11 220 chr12 25490081 25490545 -95766985 - ORR1B2 LTR MaLR 0 367 1 9 779 344 311 112 80 chr12 25490692 25490968 -95766562 - B4 SINE B4 0 292 8 9 779 210 37 0 0 chr12 25491360 25491387 -95766143 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 779 1034 82 15 0 chr12 25491387 25491522 -95766008 - B1_Mm SINE Alu -8 139 3 9 779 415 202 403 69 chr12 25492030 25492175 -95765355 + B3 SINE B2 1 197 -19 9 779 2257 138 44 8 chr12 25492175 25492540 -95764990 - ORR1C1 LTR MaLR 0 378 1 9 779 415 229 25 84 chr12 25492540 25492563 -95764967 + B3 SINE B2 198 216 0 9 779 769 299 50 11 chr12 25492670 25492951 -95764579 - B4 SINE B4 0 292 1 9 779 1476 58 16 16 chr12 25493586 25493780 -95763750 - B2_Mm2 SINE B2 0 195 2 9 779 711 65 0 0 chr12 25494148 25494241 -95763289 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 9 779 332 376 13 7 chr12 25494322 25494472 -95763058 + MER63A DNA AcHobo 1 151 -59 9 779 957 53 53 0 chr12 25494474 25494644 -95762886 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 9 779 324 299 129 20 chr12 25495341 25495488 -95762042 + RSINE1 SINE B4 3 165 0 9 779 556 225 50 41 chr12 25495553 25495775 -95761755 + B3A SINE B2 1 216 0 9 779 195 288 165 58 chr12 25497136 25497324 -95760206 + L4 LINE RTE 1602 1809 -220 9 779 245 138 69 0 chr12 25498293 25498351 -95759179 + T-rich Low_complexity Low_complexity 1 62 0 9 779 1234 48 0 0 chr12 25498351 25498498 -95759032 - B1_Mus2 SINE Alu 0 147 1 9 779 418 75 14 0 chr12 25498545 25498610 -95758920 - B2_Mm2 SINE B2 -82 116 46 9 779 990 84 138 25 chr12 25498638 25498797 -95758733 - B2_Mm1t SINE B2 -16 177 1 9 779 866 242 48 35 chr12 25499055 25499286 -95758244 + B4 SINE B4 48 281 -11 9 779 1309 65 4 7 chr12 25499286 25499563 -95757967 + (CA)n Simple_repeat Simple_repeat 1 276 0 9 779 350 287 64 0 chr12 25500366 25500460 -95757070 + B4A SINE B4 178 277 -15 1 779 231 125 0 0 chr12 25500464 25500504 -95757026 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 779 22 0 0 0 chr12 25500792 25500814 -95756716 + AT_rich Low_complexity Low_complexity 1 22 0 3 779 3492 23 5 0 chr12 25501006 25501400 -95756130 + MTA_Mm LTR MaLR 1 396 0 4 779 351 272 0 47 chr12 25501638 25501723 -95755807 - ID4 SINE ID 0 83 3 5 779 1324 101 37 0 chr12 25501794 25501982 -95755548 + B2_Mm2 SINE B2 1 195 0 6 779 371 260 31 10 chr12 25502013 25502110 -95755420 - B1F1 SINE Alu -48 101 3 7 779 358 175 62 0 chr12 25502547 25502627 -95754903 - B1_Mur3 SINE Alu -64 85 1 8 779 264 30 0 0 chr12 25502759 25502792 -95754738 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 779 2386 33 50 0 chr12 25503147 25503447 -95754083 - L1_Mus1 LINE L1 -500 6067 5753 1 779 3994 38 25 10 chr12 25503447 25503929 -95753601 + L1_Mus1 LINE L1 6079 6567 0 1 779 1118 171 23 28 chr12 25504112 25504329 -95753201 + URR1B DNA MER1_type 4 219 -6 1 779 907 220 36 5 chr12 25505233 25505425 -95752105 - B3 SINE B2 -14 202 5 1 779 23 0 0 0 chr12 25505561 25505584 -95751946 + AT_rich Low_complexity Low_complexity 1 23 0 1 779 291 263 101 40 chr12 25505589 25505688 -95751842 - RSINE1 SINE B4 0 165 61 1 779 858 269 50 58 chr12 25506236 25506496 -95751034 + B4A SINE B4 27 284 -8 1 779 1237 48 0 0 chr12 25506640 25506787 -95750743 + B1_Mm SINE Alu 1 147 0 1 779 219 195 39 0 chr12 25506787 25506847 -95750683 + (CAAAC)n Simple_repeat Simple_repeat 5 66 0 1 779 280 0 50 0 chr12 25506847 25506887 -95750643 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1 779 219 195 39 0 chr12 25506887 25506903 -95750627 + (CAAAC)n Simple_repeat Simple_repeat 2 18 0 1 779 561 158 0 0 chr12 25507489 25507590 -95749940 + (TA)n Simple_repeat Simple_repeat 1 101 0 2 779 633 214 149 6 chr12 25508109 25508283 -95749247 - B3 SINE B2 0 216 18 2 779 298 236 57 0 chr12 25508389 25508477 -95749053 - PB1D10 SINE Alu -33 116 22 2 779 256 241 107 12 chr12 25508490 25508574 -95748956 + HAL1 LINE L1 1508 1599 -908 2 779 872 117 0 0 chr12 25509287 25509407 -95748123 - PB1D9 SINE Alu 0 120 1 2 779 600 241 29 0 chr12 25509420 25509557 -95747973 - B1F SINE Alu -8 141 1 2 779 286 229 0 67 chr12 25509492 25509567 -95747963 - B4A SINE B4 -142 150 81 2 779 261 0 0 0 chr12 25510366 25510395 -95747135 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 779 533 215 40 0 chr12 25511188 25511317 -95746213 - B1F SINE Alu -7 142 3 2 779 899 199 131 0 chr12 25511374 25511565 -95745965 + B3 SINE B2 1 216 0 2 779 321 125 0 0 chr12 25511797 25511853 -95745677 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 779 423 0 0 0 chr12 25512745 25512792 -95744738 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 779 229 237 96 5 chr12 25513187 25513275 -95744255 - L1MA8 LINE L1 -14 6298 6197 3 779 1140 263 142 20 chr12 25513336 25513509 -95744021 + MLT2B1 LTR ERVL 5 182 -338 3 779 252 0 0 0 chr12 25513509 25513537 -95743993 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 779 1140 263 142 20 chr12 25513537 25513820 -95743710 + MLT2B1 LTR ERVL 183 516 -4 3 779 204 67 0 0 chr12 25513969 25513999 -95743531 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 3 779 341 341 38 21 chr12 25515266 25515452 -95742078 + MIR SINE MIR 18 206 -56 3 779 24 77 0 0 chr12 25516331 25516383 -95741147 + GC_rich Low_complexity Low_complexity 1 52 0 3 779 23 33 0 0 chr12 25516440 25516470 -95741060 + GC_rich Low_complexity Low_complexity 1 30 0 3 779 35 41 0 0 chr12 25516717 25516766 -95740764 + GC_rich Low_complexity Low_complexity 1 49 0 3 779 23 33 0 0 chr12 25516826 25516856 -95740674 + GC_rich Low_complexity Low_complexity 1 30 0 4 779 396 0 0 0 chr12 25518046 25518090 -95739440 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 779 1167 62 0 0 chr12 25519356 25519367 -95738163 - B1_Mm SINE Alu 0 147 137 4 779 1497 12 0 0 chr12 25519367 25519538 -95737992 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 4 779 1167 62 0 0 chr12 25519538 25519672 -95737858 - B1_Mm SINE Alu -11 136 3 4 779 1566 62 5 0 chr12 25519696 25519888 -95737642 - B2_Mm1t SINE B2 0 193 1 4 779 431 198 26 22 chr12 25520594 25520826 -95736704 + (TATG)n Simple_repeat Simple_repeat 1 233 0 4 779 21 0 0 0 chr12 25520992 25521013 -95736517 + GC_rich Low_complexity Low_complexity 1 21 0 4 779 621 133 115 0 chr12 25521643 25521756 -95735774 - B1_Mur3 SINE Alu -23 126 1 4 779 630 297 32 0 chr12 25523469 25523654 -95733876 + B3A SINE B2 1 191 -7 4 779 230 214 54 0 chr12 25523723 25523779 -95733751 + BC1_Mm scRNA scRNA 32 90 -62 4 779 577 272 105 44 chr12 25523757 25524072 -95733458 + MamRep4096 DNA hAT? 74 407 -19 5 779 580 185 0 63 chr12 25525025 25525152 -95732378 - PB1D9 SINE Alu -1 119 1 5 779 661 202 105 0 chr12 25525166 25525290 -95732240 - B1_Mur2 SINE Alu -10 139 3 5 779 287 314 73 0 chr12 25526594 25526731 -95730799 - MER102b DNA MER1_type -107 234 88 5 779 201 89 21 43 chr12 25528713 25528760 -95728770 + GA-rich Low_complexity Low_complexity 4 49 0 5 779 812 184 15 61 chr12 25528928 25529125 -95728405 - L1M2 LINE L1 -724 5576 5389 5 779 853 282 6 86 chr12 25529128 25529466 -95728064 + L1MA6 LINE L1 5590 5900 -400 5 779 384 288 65 52 chr12 25529531 25529762 -95727768 + L1MA6 LINE L1 6066 6299 -1 5 779 402 39 0 0 chr12 25530058 25530110 -95727420 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 779 222 37 0 0 chr12 25530153 25530180 -95727350 + (T)n Simple_repeat Simple_repeat 1 27 0 5 779 759 204 70 20 chr12 25530345 25530545 -95726985 + B3 SINE B2 1 210 -6 5 779 290 208 28 28 chr12 25533857 25533966 -95723564 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 6 779 236 204 20 0 chr12 25533993 25534042 -95723488 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 779 526 195 114 23 chr12 25535815 25536051 -95721479 - ORR1D2 LTR MaLR 0 370 52 6 779 736 152 15 0 chr12 25536051 25536183 -95721347 - URR1B DNA MER1_type -3 222 89 6 779 751 197 147 5 chr12 25536836 25537020 -95720510 - B3 SINE B2 -1 215 6 6 779 357 24 0 0 chr12 25537092 25537134 -95720396 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 779 549 275 119 32 chr12 25537164 25537416 -95720114 + B4A SINE B4 3 276 -16 6 779 439 286 0 0 chr12 25537502 25537607 -95719923 + PB1D10 SINE Alu 1 105 -12 6 779 803 216 73 5 chr12 25538608 25538799 -95718731 - B3 SINE B2 -4 212 9 6 779 964 88 81 0 chr12 25538870 25539006 -95718524 - B1_Mm SINE Alu 0 147 1 6 779 838 314 60 85 chr12 25539505 25539975 -95717555 + MLT1G3 LTR MaLR 11 468 -127 7 779 1317 85 17 0 chr12 25540151 25540327 -95717203 + B2_Mm1t SINE B2 1 179 -14 7 779 425 72 324 9 chr12 25540340 25540451 -95717079 + B2_Mm2 SINE B2 47 192 -3 7 779 317 281 158 0 chr12 25540526 25540672 -95716858 - L1MC3 LINE L1 -1 7784 7616 7 779 702 291 34 0 chr12 25540897 25541103 -95716427 - ID_B1 SINE B4 -7 217 5 7 779 771 232 158 24 chr12 25541229 25541521 -95716009 - L1MC3 LINE L1 -252 7533 7203 7 779 706 245 14 51 chr12 25541782 25541997 -95715533 + B3 SINE B2 3 209 -7 7 779 592 247 84 6 chr12 25542021 25542188 -95715342 + B3A SINE B2 1 180 -18 7 779 707 119 0 0 chr12 25543087 25543196 -95714334 - B1_Mus2 SINE Alu -37 110 2 7 779 599 231 0 0 chr12 25543924 25544041 -95713489 - B1_Mur2 SINE Alu -24 125 9 7 779 815 167 7 13 chr12 25545076 25545228 -95712302 + URR1A DNA MER1_type 76 226 0 7 779 185 216 173 13 chr12 25545861 25545936 -95711594 - L2a LINE L2 -12 3414 3328 8 779 565 190 0 0 chr12 25545943 25546043 -95711487 + B1_Mur1 SINE Alu 50 149 0 8 779 31 0 0 0 chr12 25546332 25546363 -95711167 + AT_rich Low_complexity Low_complexity 1 31 0 8 779 549 41 0 0 chr12 25546363 25546430 -95711100 - B1_Mus2 SINE Alu 0 147 81 8 779 416 239 8 74 chr12 25546430 25546468 -95711062 + B3A SINE B2 3 35 -163 8 779 5312 54 34 1 chr12 25546468 25547150 -95710380 - L1_Mus3 LINE L1 -1 6637 5934 8 779 416 239 8 74 chr12 25547150 25547233 -95710297 + B3A SINE B2 36 116 -82 8 779 307 222 0 14 chr12 25547238 25547311 -95710219 + URR1A DNA MER1_type 3 74 -152 8 779 524 233 58 0 chr12 25547298 25547418 -95710112 - B3A SINE B2 -66 132 6 8 779 3097 148 114 18 chr12 25547707 25548278 -95709252 + Lx4A LINE L1 6430 7055 -3 8 779 207 0 0 0 chr12 25548281 25548304 -95709226 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 8 779 553 162 233 39 chr12 25548430 25548610 -95708920 + B3 SINE B2 2 216 0 9 779 288 0 0 0 chr12 25548665 25548697 -95708833 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 779 478 310 7 7 chr12 25548699 25548845 -95708685 - RSINE1 SINE B4 -17 148 3 9 779 216 0 0 0 chr12 25548991 25549015 -95708515 + (T)n Simple_repeat Simple_repeat 1 24 0 9 779 545 336 0 0 chr12 25549550 25549696 -95707834 - RSINE1 SINE B4 0 165 20 9 779 275 217 38 11 chr12 25549730 25549841 -95707689 - L1M5 LINE L1 -476 5883 5769 9 779 381 22 0 0 chr12 25550405 25550451 -95707079 + (CCTG)n Simple_repeat Simple_repeat 2 47 0 9 779 506 184 353 39 chr12 25550490 25550646 -95706884 - B3 SINE B2 -10 206 2 9 779 3507 20 2 2 chr12 25550890 25551284 -95706246 - MTA_Mm LTR MaLR 0 396 3 9 779 447 271 25 0 chr12 25551831 25551953 -95705577 + B3 SINE B2 91 215 -1 9 779 581 209 0 72 chr12 25552431 25552570 -95704960 + B3 SINE B2 2 130 -86 1 779 25 51 0 0 chr12 25552595 25552634 -95704896 + AT_rich Low_complexity Low_complexity 1 39 0 1 779 562 191 48 0 chr12 25553082 25553187 -95704343 - B3A SINE B2 -88 110 1 1 779 630 194 79 36 chr12 25553348 25553487 -95704043 + B1_Mur3 SINE Alu 2 146 -3 1 779 254 277 100 87 chr12 25553356 25553506 -95704024 + B4A SINE B4 95 246 -46 1 779 207 0 0 0 chr12 25554416 25554439 -95703091 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 779 240 122 0 0 chr12 25554605 25554646 -95702884 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 1 779 304 281 95 98 chr12 25555334 25555598 -95701932 - L1M5 LINE L1 -419 5821 5559 1 779 495 282 24 8 chr12 25556251 25556376 -95701154 - PB1 SINE Alu 0 127 1 1 779 331 245 39 19 chr12 25556412 25556516 -95701014 - MER33 DNA MER1_type -200 124 19 1 779 258 296 81 29 chr12 25557228 25557364 -95700166 + L1M5 LINE L1 5464 5606 -634 1 779 231 214 71 12 chr12 25558195 25558280 -95699250 - PB1D7 SINE Alu 0 120 31 1 779 29 60 0 0 chr12 25558401 25558451 -95699079 + AT_rich Low_complexity Low_complexity 1 50 0 1 780 2325 129 39 8 chr12 25559309 25559691 -95697839 - ORR1B1 LTR MaLR 0 394 1 1 780 647 311 97 13 chr12 25559752 25560052 -95697478 - MER2 DNA MER2_type -6 339 15 1 780 289 311 89 63 chr12 25560083 25560241 -95697289 - RSINE1 SINE B4 -2 163 2 1 780 444 239 14 7 chr12 25560645 25560788 -95696742 + CT-rich Low_complexity Low_complexity 2 145 0 1 780 318 262 73 27 chr12 25560788 25560898 -95696632 - PB1D10 SINE Alu 0 117 3 1 780 180 77 0 0 chr12 25561225 25561251 -95696279 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 780 879 86 0 0 chr12 25563606 25563745 -95693785 + (TC)n Simple_repeat Simple_repeat 2 140 0 1 780 567 202 8 0 chr12 25565183 25565307 -95692223 + RSINE1 SINE B4 4 128 -37 1 780 21 36 0 0 chr12 25565720 25565748 -95691782 + AT_rich Low_complexity Low_complexity 1 28 0 1 780 257 0 0 29 chr12 25566808 25566842 -95690688 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 780 345 266 63 11 chr12 25567823 25567918 -95689612 - MER20 DNA MER1_type -25 194 95 1 780 237 243 264 28 chr12 25568352 25568458 -95689072 + MER46C DNA MER2_type 198 328 -10 1 780 813 186 144 0 chr12 25569222 25569410 -95688120 - B3 SINE B2 -1 215 1 1 780 788 156 28 28 chr12 25569740 25569885 -95687645 - B1_Mus2 SINE Alu -2 145 1 1 780 428 62 16 0 chr12 25570045 25570109 -95687421 + (TAA)n Simple_repeat Simple_repeat 2 66 0 1 780 226 200 0 0 chr12 25570784 25570824 -95686706 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 780 1242 48 0 0 chr12 25570987 25571133 -95686397 - B1_Mus1 SINE Alu 0 148 3 1 780 513 169 96 53 chr12 25571282 25571420 -95686110 + B1_Mur1 SINE Alu 1 148 -1 1 780 794 214 35 6 chr12 25571445 25571619 -95685911 + B3 SINE B2 27 205 -11 1 780 603 291 61 45 chr12 25571848 25572158 -95685372 - MLT1A0 LTR MaLR -5 360 46 1 780 270 219 15 15 chr12 25572319 25572384 -95685146 - MER58A DNA MER1_type -133 91 27 1 780 297 118 0 0 chr12 25572459 25572510 -95685020 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 1 780 227 291 118 17 chr12 25572871 25572990 -95684540 + Tigger16b DNA Tigger 101 231 -106 1 780 623 269 89 43 chr12 25573295 25573621 -95683909 - ORR1E LTR MaLR -15 344 4 1 780 193 244 0 0 chr12 25573981 25574022 -95683508 + MIR SINE MIR 32 72 -190 1 780 1809 146 107 6 chr12 25575578 25575944 -95681586 + MTC LTR MaLR 5 407 -14 1 780 279 0 0 0 chr12 25576803 25576834 -95680696 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 780 1050 23 113 8 chr12 25576836 25576969 -95680561 - B1_Mus2 SINE Alu 0 147 1 1 780 2502 73 0 60 chr12 25577945 25578293 -95679237 - ORR1A2 LTR MaLR 0 327 1 1 780 198 216 0 0 chr12 25578293 25578334 -95679196 + T-rich Low_complexity Low_complexity 2 42 0 1 780 1067 206 69 110 chr12 25579503 25579947 -95677583 - MT2B LTR ERVL 0 601 47 1 780 272 160 20 0 chr12 25579947 25579997 -95677533 - MERVL_2A-int LTR ERVL -5 5756 5706 1 780 284 192 0 52 chr12 25579997 25580074 -95677456 - ORR1A3-int LTR MaLR -1324 639 567 1 780 5071 143 107 10 chr12 25580074 25580984 -95676546 - MERVL_2A-int LTR ERVL -133 5628 4631 1 780 287 234 116 11 chr12 25580996 25581091 -95676439 - MER104 DNA Tc2 -45 136 32 1 780 259 268 12 47 chr12 25581095 25581181 -95676349 + PB1D10 SINE Alu 13 95 -22 1 780 316 239 43 11 chr12 25581167 25581260 -95676270 + B4A SINE B4 74 169 -123 1 780 623 54 43 0 chr12 25581191 25581283 -95676247 + PB1D9 SINE Alu 12 107 -13 1 780 251 28 0 27 chr12 25581283 25581320 -95676210 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 780 351 284 0 0 chr12 25581350 25581431 -95676099 + ID4_ SINE ID 2 82 -1 1 780 252 86 0 0 chr12 25581441 25581476 -95676054 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 780 184 327 45 52 chr12 25581535 25581671 -95675859 + L2c LINE L2 3231 3353 -22 1 780 318 171 57 0 chr12 25583119 25583189 -95674341 - L1M3 LINE L1 -976 5164 5091 1 780 1437 244 219 10 chr12 25583179 25583772 -95673758 + L1MA6 LINE L1 5581 6297 -3 1 780 838 262 98 45 chr12 25583811 25584146 -95673384 - ORR1E LTR MaLR -4 355 3 1 780 280 281 92 48 chr12 25584475 25584681 -95672849 + L1MB7 LINE L1 48 262 -6280 1 780 25 0 0 0 chr12 25585067 25585092 -95672438 + AT_rich Low_complexity Low_complexity 1 25 0 1 780 727 143 286 0 chr12 25585116 25585284 -95672246 - B3 SINE B2 0 216 1 1 780 367 193 0 144 chr12 25585866 25585963 -95671567 + PB1D10 SINE Alu 24 106 -11 1 780 240 255 227 32 chr12 25585963 25586020 -95671510 + B4A SINE B4 109 292 0 1 780 250 217 83 42 chr12 25586191 25586311 -95671219 + L1MB7 LINE L1 4805 4929 -1715 1 780 804 136 26 0 chr12 25586346 25586500 -95671030 - URR1B DNA MER1_type 0 225 68 1 780 301 304 101 6 chr12 25586719 25586888 -95670642 + L1MB7 LINE L1 5149 5333 -1311 1 780 1186 107 73 0 chr12 25586937 25587115 -95670415 + B2_Mm2 SINE B2 1 191 -4 1 780 886 287 169 31 chr12 25587405 25588161 -95669369 + L1MB7 LINE L1 5802 6677 0 1 780 423 182 146 39 chr12 25589094 25589197 -95668333 + B1F2 SINE Alu 36 149 0 1 780 302 325 26 9 chr12 25589197 25589209 -95668321 + B4A SINE B4 121 237 -55 1 780 939 234 28 87 chr12 25589232 25589472 -95668058 - MTE2a LTR MaLR 0 379 151 1 780 3014 55 10 46 chr12 25589472 25589887 -95667643 - MTB LTR MaLR 0 400 1 1 780 939 234 28 87 chr12 25589887 25589932 -95667598 - MTE2a LTR MaLR -229 150 111 1 780 622 170 9 0 chr12 25589937 25590043 -95667487 + B3 SINE B2 1 107 -109 1 780 493 187 105 47 chr12 25590419 25590648 -95666882 - MT2A LTR ERVL 0 533 242 1 780 390 225 75 68 chr12 25591126 25591273 -95666257 - MT2A LTR ERVL -335 198 92 1 780 639 205 0 57 chr12 25591300 25591440 -95666090 - MT2A LTR ERVL -401 132 1 1 780 836 204 128 0 chr12 25593241 25593437 -95664093 - URR1B DNA MER1_type -4 221 1 1 780 387 0 0 0 chr12 25593625 25593668 -95663862 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 780 1142 59 0 0 chr12 25593669 25593805 -95663725 - B1_Mus1 SINE Alu -12 136 1 1 780 210 71 0 0 chr12 25593814 25593842 -95663688 + (T)n Simple_repeat Simple_repeat 1 28 0 1 780 443 100 0 14 chr12 25593868 25593939 -95663591 + (TCCCC)n Simple_repeat Simple_repeat 1 70 0 1 780 1284 96 43 0 chr12 25593947 25594134 -95663396 - B2_Mm2 SINE B2 0 195 1 1 780 1151 82 0 0 chr12 25594157 25594304 -95663226 - B1_Mus1 SINE Alu 0 148 2 1 780 534 231 191 0 chr12 25596494 25596641 -95660889 - B3 SINE B2 -5 211 37 1 780 216 0 0 0 chr12 25596649 25596673 -95660857 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 780 541 54 0 0 chr12 25596673 25596747 -95660783 - BC1_Mm scRNA scRNA -76 76 3 1 780 346 204 102 0 chr12 25596992 25597080 -95660450 + PB1 SINE Alu 24 120 -7 1 780 200 188 0 0 chr12 25597080 25597112 -95660418 + polypurine Low_complexity Low_complexity 4 35 0 1 780 303 273 19 126 chr12 25597688 25597706 -95659824 + ID_B1 SINE B4 72 213 -11 1 780 432 273 14 64 chr12 25597706 25597847 -95659683 + B1F SINE Alu 5 138 -11 1 780 235 339 59 21 chr12 25598616 25598803 -95658727 - L2 LINE L2 -970 2449 2256 1 780 289 322 131 37 chr12 25598878 25599123 -95658407 - L1ME1 LINE L1 -2 6177 5910 1 780 763 224 97 0 chr12 25599126 25599322 -95658208 - RMER15 LTR ERVL -3 572 358 1 780 584 124 146 16 chr12 25599329 25599452 -95658078 - RMER15 LTR ERVL -410 165 27 1 780 248 288 82 0 chr12 25599466 25599539 -95657991 + RSINE1 SINE B4 78 156 -9 1 780 529 291 42 17 chr12 25599576 25599814 -95657716 - L1ME1 LINE L1 -342 5822 5579 1 780 544 156 9 9 chr12 25599829 25599939 -95657591 + GA-rich Low_complexity Low_complexity 4 113 0 1 780 2323 136 14 40 chr12 25600027 25600449 -95657081 + MTC LTR MaLR 11 421 0 1 780 243 79 0 0 chr12 25600642 25600680 -95656850 + (CCTG)n Simple_repeat Simple_repeat 2 39 0 1 780 1345 78 39 11 chr12 25600680 25600861 -95656669 - B2_Mm2 SINE B2 -9 186 1 1 780 233 262 125 21 chr12 25601001 25601145 -95656385 - L1ME1 LINE L1 -730 5448 5290 1 780 243 281 65 24 chr12 25601169 25601293 -95656237 - L1ME1 LINE L1 -891 5255 5127 1 780 2028 137 72 48 chr12 25602438 25602653 -95654877 - MTC LTR MaLR -11 410 211 1 780 1073 43 178 35 chr12 25602653 25602822 -95654708 - B2_Mm2 SINE B2 0 195 3 1 780 2028 137 72 48 chr12 25602822 25603006 -95654524 - MTC LTR MaLR -211 210 1 1 780 813 262 60 24 chr12 25603006 25603247 -95654283 - B4A SINE B4 -42 250 1 1 780 293 308 88 60 chr12 25603276 25603525 -95654005 - MLT1L LTR MaLR -6 604 349 1 780 500 293 133 48 chr12 25604494 25604788 -95652742 + MER2 DNA MER2_type 17 335 -10 1 780 290 336 92 0 chr12 25604828 25604959 -95652571 - MER63D DNA AcHobo -101 960 818 1 780 40 0 0 0 chr12 25605307 25605347 -95652183 + AT_rich Low_complexity Low_complexity 1 40 0 1 780 311 336 61 0 chr12 25605401 25605532 -95651998 - MER63D DNA AcHobo -680 381 243 1 780 303 71 0 0 chr12 25605611 25605653 -95651877 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 780 214 299 102 11 chr12 25606832 25606920 -95650610 - RSINE1 SINE B4 -20 145 50 2 780 411 339 0 29 chr12 25606945 25607115 -95650415 - B4A SINE B4 -66 226 62 2 780 335 262 56 9 chr12 25607316 25607424 -95650106 - B1F SINE Alu -5 144 32 2 780 942 35 0 0 chr12 25607615 25607729 -95649801 + (TTTC)n Simple_repeat Simple_repeat 1 114 0 2 780 525 252 23 8 chr12 25607730 25607862 -95649668 - B1_Mur2 SINE Alu -13 136 3 2 780 198 91 0 0 chr12 25608229 25608262 -95649268 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 780 194 174 0 21 chr12 25609464 25609511 -95648019 + CT-rich Low_complexity Low_complexity 2 47 0 2 780 189 0 0 0 chr12 25610835 25610856 -95646674 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 2 780 312 144 11 32 chr12 25611151 25611244 -95646286 - Lx4A LINE L1 -4 7054 6964 2 780 530 198 65 62 chr12 25612358 25612501 -95645029 + B1F2 SINE Alu 2 147 -2 2 780 550 223 4 12 chr12 25612617 25612738 -95644792 + RSINE1 SINE B4 1 116 -176 2 780 811 346 115 0 chr12 25613988 25614326 -95643204 - Tigger7 DNA MER2_type -2093 398 22 2 780 944 118 31 2 chr12 25614326 25614860 -95642670 + (TG)n Simple_repeat Simple_repeat 1 549 0 2 780 550 199 41 77 chr12 25615217 25615386 -95642144 - RSINE1 SINE B4 0 165 3 2 780 248 308 47 2 chr12 25615828 25615975 -95641555 + L2a LINE L2 2957 3106 -269 2 780 288 77 0 0 chr12 25616578 25616617 -95640913 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 780 873 203 120 0 chr12 25616704 25616896 -95640634 + B3 SINE B2 1 215 -1 2 780 731 317 72 29 chr12 25620714 25621062 -95636468 - MER68 LTR ERVL -83 480 118 2 780 216 0 0 0 chr12 25621368 25621392 -95636138 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 780 627 262 71 125 chr12 25621753 25622050 -95635480 + B4A SINE B4 2 282 -10 2 780 752 48 0 19 chr12 25622148 25622254 -95635276 + (GGGA)n Simple_repeat Simple_repeat 4 107 0 2 780 709 261 43 14 chr12 25622553 25622763 -95634767 - B3 SINE B2 0 216 1 2 780 180 111 0 0 chr12 25622893 25622920 -95634610 + (GGGTG)n Simple_repeat Simple_repeat 5 31 0 2 780 359 287 102 104 chr12 25623304 25623639 -95633891 - L1MC4 LINE L1 -5159 1056 723 2 780 871 189 168 0 chr12 25625116 25625301 -95632229 + B3 SINE B2 1 216 0 2 780 215 254 195 8 chr12 25626029 25626152 -95631378 + L2 LINE L2 2112 2257 -1162 2 780 301 258 100 21 chr12 25627238 25627350 -95630180 - B4A SINE B4 -171 121 1 2 780 337 250 73 0 chr12 25627540 25627636 -95629894 - PB1D7 SINE Alu -15 105 3 2 780 195 42 0 0 chr12 25627691 25627715 -95629815 + (CCCTG)n Simple_repeat Simple_repeat 5 28 0 2 780 292 342 164 0 chr12 25627795 25627947 -95629583 + MER20 DNA MER1_type 33 209 -10 2 780 382 277 83 8 chr12 25628120 25628240 -95629290 + ID_B1 SINE B4 94 222 -2 2 780 503 270 0 0 chr12 25628350 25628450 -95629080 + PB1D7 SINE Alu 5 104 -16 2 780 906 189 13 0 chr12 25628485 25628638 -95628892 + B3A SINE B2 2 156 -42 2 780 1390 87 22 0 chr12 25628730 25628915 -95628615 + B2_Mm2 SINE B2 1 189 -6 2 780 21 0 0 0 chr12 25628928 25628949 -95628581 + AT_rich Low_complexity Low_complexity 1 21 0 2 780 1210 42 14 0 chr12 25629394 25629538 -95627992 - B1_Mur4 SINE Alu 0 150 5 2 780 213 333 76 86 chr12 25629994 25630081 -95627449 + L2a LINE L2 3226 3303 -123 2 780 644 36 12 0 chr12 25630081 25630164 -95627366 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 780 213 333 76 86 chr12 25630164 25630273 -95627257 + L2a LINE L2 3304 3420 -6 2 780 931 257 68 102 chr12 25630400 25630490 -95627040 - MTE2a LTR MaLR -5 374 287 2 780 1774 220 57 12 chr12 25630490 25630891 -95626639 - MTD LTR MaLR 0 419 1 2 780 931 257 68 102 chr12 25630891 25631182 -95626348 - MTE2a LTR MaLR -93 286 7 2 780 204 241 37 0 chr12 25631676 25631730 -95625800 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 780 239 187 0 210 chr12 25631730 25631811 -95625719 - ID4_ SINE ID -12 71 8 2 780 717 219 52 31 chr12 25631843 25632036 -95625494 - B3A SINE B2 0 198 2 2 780 312 310 47 47 chr12 25632036 25632185 -95625345 - B1F1 SINE Alu 0 149 1 2 780 932 240 8 12 chr12 25632294 25632499 -95625031 + B3 SINE B2 1 191 -2 2 780 359 282 124 101 chr12 25632653 25632862 -95624668 + B4A SINE B4 1 214 -78 2 780 339 119 0 0 chr12 25633301 25633368 -95624162 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 780 295 274 58 35 chr12 25633381 25633468 -95624062 - PB1 SINE Alu -38 89 1 2 780 276 100 0 0 chr12 25633569 25633609 -95623921 + (TAA)n Simple_repeat Simple_repeat 3 42 0 2 780 224 343 64 9 chr12 25634400 25634509 -95623021 - PB1D10 SINE Alu -1 116 2 2 780 252 281 18 0 chr12 25634728 25634785 -95622745 + RSINE1 SINE B4 8 65 -100 2 780 201 74 0 0 chr12 25634804 25634831 -95622699 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 2 780 775 174 116 77 chr12 25635611 25635792 -95621738 + B3A SINE B2 2 189 -9 2 780 869 238 54 10 chr12 25635958 25636162 -95621368 + B3 SINE B2 1 213 -3 2 780 622 241 240 4 chr12 25636484 25636726 -95620804 - ORR1D2 LTR MaLR -57 313 15 2 780 547 172 76 25 chr12 25637220 25637339 -95620191 + B3 SINE B2 91 215 -1 2 780 590 265 88 0 chr12 25637772 25637919 -95619611 + B3A SINE B2 1 160 -38 2 780 432 0 0 0 chr12 25637921 25637969 -95619561 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 780 186 43 0 0 chr12 25638264 25638287 -95619243 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 780 1474 84 5 0 chr12 25638709 25638900 -95618630 + B2_Mm1a SINE B2 2 193 0 2 780 509 250 28 56 chr12 25639469 25639613 -95617917 + B3A SINE B2 1 140 -58 2 780 279 205 52 0 chr12 25641409 25641481 -95616049 - ID4_ SINE ID -66 86 4 2 780 207 176 0 0 chr12 25641881 25641915 -95615615 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 2 780 21 0 0 0 chr12 25645088 25645109 -95612421 + AT_rich Low_complexity Low_complexity 1 21 0 2 780 188 130 22 0 chr12 25646532 25646578 -95610952 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 780 201 154 0 0 chr12 25648993 25649032 -95608498 + T-rich Low_complexity Low_complexity 1 39 0 2 780 402 274 63 56 chr12 25649397 25649540 -95607990 - RSINE1 SINE B4 -15 150 7 2 780 649 239 151 17 chr12 25649876 25650055 -95607475 - B3 SINE B2 -12 204 2 2 780 279 0 0 0 chr12 25650179 25650210 -95607320 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 780 247 289 14 58 chr12 25650765 25650852 -95606678 - BC1_Mm scRNA scRNA 0 83 1 2 780 753 248 150 48 chr12 25650902 25651235 -95606295 + MTEa LTR MaLR 1 367 -12 2 780 3503 116 52 92 chr12 25651493 25652062 -95605468 - RMER6A LTR ERVK 0 756 209 2 780 1216 68 0 0 chr12 25652062 25652209 -95605321 - B1_Mm SINE Alu 0 147 1 2 780 3503 116 52 92 chr12 25652209 25652314 -95605216 - RMER6A LTR ERVK -548 208 109 2 780 333 0 0 0 chr12 25652498 25652535 -95604995 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 780 351 346 15 30 chr12 25652748 25652879 -95604651 - B4A SINE B4 -162 130 2 2 780 3002 115 0 5 chr12 25653460 25653870 -95603660 + MT2B LTR ERVL 5 412 -189 2 780 2429 77 0 58 chr12 25653909 25654254 -95603276 - ORR1A2 LTR MaLR 0 327 3 2 780 2952 98 76 27 chr12 25654256 25654705 -95602825 - ORR1A2-int LTR MaLR 0 1963 1493 2 780 356 266 167 67 chr12 25655440 25655485 -95602045 + ORR1D1 LTR MaLR 78 115 -259 2 780 3131 56 38 13 chr12 25655485 25655882 -95601648 + MTB_Mm LTR MaLR 1 407 0 2 780 356 266 167 67 chr12 25655882 25656106 -95601424 + ORR1D1 LTR MaLR 116 374 0 2 780 622 233 143 14 chr12 25656150 25656203 -95601327 - MTE2b LTR MaLR 0 379 315 2 780 692 54 11 0 chr12 25656203 25656296 -95601234 + (GGAA)n Simple_repeat Simple_repeat 1 94 0 2 780 622 245 154 9 chr12 25656296 25656536 -95600994 - MTE2b LTR MaLR -65 314 1 2 780 569 163 102 39 chr12 25656768 25656896 -95600634 - B3A SINE B2 -59 139 4 2 780 442 244 0 23 chr12 25656932 25657020 -95600510 - B1F SINE Alu -58 91 6 2 780 26 0 0 0 chr12 25657709 25657735 -95599795 + AT_rich Low_complexity Low_complexity 1 26 0 2 780 212 122 0 24 chr12 25658423 25658465 -95599065 + (TTC)n Simple_repeat Simple_repeat 1 41 0 2 780 507 184 67 10 chr12 25658466 25658570 -95598960 - PB1D9 SINE Alu -8 112 3 2 780 517 169 10 10 chr12 25659496 25659592 -95597938 + ID_B1 SINE B4 121 216 -8 2 780 288 53 0 0 chr12 25659592 25659630 -95597900 + (CAACC)n Simple_repeat Simple_repeat 5 42 0 2 780 255 271 0 14 chr12 25660928 25660955 -95596575 + polypyrimidine Low_complexity Low_complexity 47 72 0 2 780 336 48 0 0 chr12 25660955 25660997 -95596533 + (TCCC)n Simple_repeat Simple_repeat 2 43 0 2 780 255 271 0 14 chr12 25660997 25661040 -95596490 + polypyrimidine Low_complexity Low_complexity 4 46 0 2 780 351 216 7 0 chr12 25661042 25661118 -95596412 - PB1D9 SINE Alu -34 115 37 2 780 1237 94 27 27 chr12 25661899 25662084 -95595446 - B2_Mm2 SINE B2 -9 186 2 2 780 196 250 83 0 chr12 25662288 25662348 -95595182 - L2b LINE L2 -25 3350 3286 2 780 209 360 134 65 chr12 25662522 25662828 -95594702 - L2a LINE L2 -40 3386 3060 2 780 3382 58 10 0 chr12 25662878 25663294 -95594236 - L1_Mus1 LINE L1 0 6567 6148 2 780 225 0 0 0 chr12 25663294 25663319 -95594211 + (A)n Simple_repeat Simple_repeat 1 25 0 2 780 6449 58 42 1 chr12 25663319 25664161 -95593369 + L1_Mm LINE L1 4214 5089 -794 2 780 346 252 221 0 chr12 25664321 25664452 -95593078 - B3 SINE B2 -30 186 27 2 780 226 336 87 45 chr12 25664547 25664812 -95592718 - L1ME1 LINE L1 0 6179 5904 3 780 312 281 48 54 chr12 25664822 25664973 -95592557 - MLT1F-int LTR MaLR -1 1488 1362 3 780 355 252 44 18 chr12 25665028 25665141 -95592389 + PB1D10 SINE Alu 1 116 -1 3 780 207 100 0 0 chr12 25665170 25665200 -95592330 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 3 780 265 300 89 17 chr12 25665252 25665486 -95592044 - L1ME1 LINE L1 -969 5177 4925 3 780 231 292 27 36 chr12 25665521 25665631 -95591899 - Lx8 LINE L1 -2 7471 7363 3 780 503 245 41 61 chr12 25666030 25666183 -95591347 + MER5A DNA MER1_type 31 170 -19 3 780 836 281 52 0 chr12 25666186 25666474 -95591056 - L1MA7 LINE L1 0 6291 5989 3 780 254 303 141 0 chr12 25666541 25666640 -95590890 - L2b LINE L2 -652 2767 2655 2 780 25 0 0 0 chr12 25667406 25667431 -95590099 + AT_rich Low_complexity Low_complexity 1 25 0 3 780 1161 82 0 0 chr12 25667431 25667578 -95589952 - B1_Mus2 SINE Alu 0 147 1 3 780 1029 90 6 6 chr12 25667580 25667737 -95589793 - B2_Mm1t SINE B2 0 193 37 3 780 974 190 25 5 chr12 25668190 25668391 -95589139 + RMER21B LTR ERV1 638 842 0 3 780 736 249 12 17 chr12 25668391 25668563 -95588967 - Lx7 LINE L1 -459 7237 7067 3 780 6042 55 16 0 chr12 25668774 25669514 -95588016 - L1_Mus1 LINE L1 -1 6566 5815 3 780 647 246 109 5 chr12 25669763 25669955 -95587575 + B3 SINE B2 1 212 -4 3 780 426 320 8 0 chr12 25670249 25670374 -95587156 + RSINE1 SINE B4 3 128 -37 3 780 626 263 107 31 chr12 25670402 25670598 -95586932 + B4 SINE B4 81 291 -1 3 780 980 233 33 43 chr12 25670637 25670848 -95586682 + B3 SINE B2 2 210 -6 3 780 299 256 36 158 chr12 25671928 25671962 -95585568 + MT2B LTR ERVL 136 152 -449 3 780 626 218 29 43 chr12 25671962 25672101 -95585429 + B1_Mur1 SINE Alu 2 138 -11 3 780 183 80 0 0 chr12 25672101 25672126 -95585404 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 780 674 260 45 11 chr12 25672238 25672417 -95585113 - Lx7 LINE L1 -726 6970 6786 3 780 290 189 0 0 chr12 25672828 25672881 -95584649 - PB1D9 SINE Alu -65 55 3 3 780 238 26 25 25 chr12 25674740 25674780 -95582750 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 3 780 1106 55 14 20 chr12 25674781 25674929 -95582601 - B1_Mus1 SINE Alu 0 148 2 3 780 316 229 35 11 chr12 25677314 25677407 -95580123 - PB1D7 SINE Alu -8 112 17 3 780 22 70 0 0 chr12 25677512 25677555 -95579975 + AT_rich Low_complexity Low_complexity 1 43 0 3 780 517 217 147 0 chr12 25677596 25677725 -95579805 - B1_Mur2 SINE Alu -1 148 1 3 780 1054 82 170 0 chr12 25677888 25678047 -95579483 + B2_Mm2 SINE B2 1 186 -9 3 780 376 298 43 9 chr12 25678891 25679006 -95578524 + RSINE1 SINE B4 16 134 -31 3 780 448 182 191 86 chr12 25679417 25679579 -95577951 - B3A SINE B2 -16 182 4 3 780 219 125 0 0 chr12 25680909 25680949 -95576581 + (T)n Simple_repeat Simple_repeat 1 40 0 3 780 1168 62 0 7 chr12 25680950 25681095 -95576435 - B1_Mm SINE Alu 0 147 4 3 780 216 0 0 0 chr12 25682307 25682331 -95575199 + (TGG)n Simple_repeat Simple_repeat 3 26 0 3 780 183 42 0 0 chr12 25682799 25682823 -95574707 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 780 1189 68 0 0 chr12 25682829 25682977 -95574553 - B1_Mus1 SINE Alu 0 148 1 3 780 292 256 26 0 chr12 25683283 25683361 -95574169 + ID4_ SINE ID 2 81 -2 3 780 2434 117 31 19 chr12 25685099 25685516 -95572014 + Lx3B LINE L1 6543 6964 -9 3 780 231 244 0 0 chr12 25686662 25686740 -95570790 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 780 257 267 0 0 chr12 25686771 25686831 -95570699 - ID4 SINE ID -11 72 13 3 780 607 262 35 56 chr12 25687081 25687279 -95570251 - B3A SINE B2 -4 194 1 3 780 236 261 43 0 chr12 25687499 25687568 -95569962 - ID4_ SINE ID -9 74 3 3 780 1395 94 5 0 chr12 25689022 25689213 -95568317 - B2_Mm1a SINE B2 -1 192 1 3 781 197 65 32 0 chr12 25690194 25690225 -95567305 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 3 781 1142 102 31 46 chr12 25690930 25691125 -95566405 + B2_Mm2 SINE B2 4 195 0 3 781 26 0 0 0 chr12 25691207 25691233 -95566297 + AT_rich Low_complexity Low_complexity 1 26 0 3 781 278 237 9 110 chr12 25691250 25691359 -95566171 + MER2 DNA MER2_type 134 231 -114 3 781 795 259 16 16 chr12 25691493 25691685 -95565845 + B3A SINE B2 1 192 -6 3 781 21 57 0 0 chr12 25692032 25692067 -95565463 + AT_rich Low_complexity Low_complexity 1 35 0 3 781 672 232 46 61 chr12 25692067 25692088 -95565442 - B3A SINE B2 -1 197 184 3 781 324 0 0 0 chr12 25692088 25692124 -95565406 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 781 798 217 57 0 chr12 25692124 25692299 -95565231 - B3 SINE B2 -28 188 4 3 781 865 204 19 16 chr12 25692608 25692810 -95564720 + B3 SINE B2 1 192 -3 3 781 1329 101 15 31 chr12 25693802 25693997 -95563533 - B2_Mm2 SINE B2 0 195 4 3 781 1600 258 104 25 chr12 25694013 25694617 -95562913 - L1MC1 LINE L1 -97 6236 5585 3 781 982 245 95 20 chr12 25696035 25696339 -95561191 - ORR1D2 LTR MaLR -43 327 1 3 781 330 230 13 39 chr12 25696492 25696569 -95560961 - ID4_ SINE ID 0 83 9 3 781 1062 66 73 0 chr12 25697292 25697429 -95560101 - B1_Mm SINE Alu 0 147 1 3 781 234 354 12 0 chr12 25698360 25698442 -95559088 - ID4_ SINE ID 0 83 1 3 781 22 0 0 0 chr12 25698605 25698627 -95558903 + AT_rich Low_complexity Low_complexity 1 22 0 3 781 854 165 0 28 chr12 25698738 25698881 -95558649 + B1_Mus1 SINE Alu 1 139 -9 3 781 307 281 144 17 chr12 25700012 25700186 -95557344 - L2a LINE L2 -297 3129 2934 3 781 387 227 31 10 chr12 25700302 25700396 -95557134 + B1F1 SINE Alu 1 96 -53 3 781 350 289 56 28 chr12 25700396 25700503 -95557027 + PB1D10 SINE Alu 1 110 -7 3 781 522 0 0 0 chr12 25700693 25700751 -95556779 + (TTCTG)n Simple_repeat Simple_repeat 1 58 0 3 781 289 209 112 34 chr12 25701395 25701484 -95556046 - PB1D7 SINE Alu -6 114 19 3 781 215 281 15 104 chr12 25701484 25701526 -95556004 - ID_B1 SINE B4 -2 218 100 3 781 227 264 0 0 chr12 25701529 25701582 -95555948 - B1F1 SINE Alu -92 57 5 3 781 386 240 236 16 chr12 25702221 25702344 -95555186 + B1_Mur4 SINE Alu 1 150 0 3 781 31 68 0 0 chr12 25702408 25702467 -95555063 + AT_rich Low_complexity Low_complexity 1 59 0 3 781 346 260 154 13 chr12 25702943 25703099 -95554431 - MIR SINE MIR -39 223 46 3 781 201 128 0 49 chr12 25703453 25703494 -95554036 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 3 781 1189 61 0 7 chr12 25704441 25704589 -95552941 + B1_Mus2 SINE Alu 1 147 0 3 781 192 77 0 0 chr12 25704589 25704615 -95552915 + (A)n Simple_repeat Simple_repeat 1 26 0 3 781 250 312 135 31 chr12 25704772 25704964 -95552566 - MTE2b LTR MaLR -52 327 116 3 781 1475 303 68 60 chr12 25704964 25705343 -95552187 - MTE-int LTR MaLR -2 1578 1184 3 781 1201 48 0 14 chr12 25705343 25705490 -95552040 - B1_Mm SINE Alu -1 146 2 3 781 1475 303 68 60 chr12 25705490 25705848 -95551682 - MTE-int LTR MaLR -397 1183 835 3 781 1664 36 0 0 chr12 25706228 25706421 -95551109 + B2_Mm1a SINE B2 1 193 0 3 781 245 295 0 153 chr12 25706534 25706658 -95550872 + MT2B LTR ERVL 146 250 -351 3 781 533 178 19 56 chr12 25706560 25706667 -95550863 + PB1D9 SINE Alu 6 108 -12 3 781 21 36 0 0 chr12 25706748 25706776 -95550754 + AT_rich Low_complexity Low_complexity 1 28 0 3 781 180 0 0 0 chr12 25708956 25708976 -95548554 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 781 752 145 8 0 chr12 25708980 25709104 -95548426 - B1_Mus2 SINE Alu -7 140 16 3 781 1033 154 96 10 chr12 25709166 25709363 -95548167 - B3 SINE B2 0 216 3 3 781 495 112 110 22 chr12 25709621 25709712 -95547818 - B1_Mur1 SINE Alu 0 149 51 3 781 713 221 81 52 chr12 25710111 25710321 -95547209 + B3 SINE B2 1 216 0 3 781 574 205 0 26 chr12 25711058 25711173 -95546357 + PB1D10 SINE Alu 6 117 0 3 781 234 0 0 0 chr12 25712539 25712565 -95544965 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 3 781 492 271 8 0 chr12 25712672 25712790 -95544740 - B4 SINE B4 -79 213 95 3 781 552 220 27 34 chr12 25713129 25713275 -95544255 + B1_Mus2 SINE Alu 1 145 -2 3 781 2526 80 6 0 chr12 25713311 25713636 -95543894 - ORR1A2 LTR MaLR 0 327 1 3 781 1115 82 0 0 chr12 25713936 25714083 -95543447 - B1_Mus1 SINE Alu 0 148 2 3 781 1392 199 143 19 chr12 25714392 25714811 -95542719 + RLTR11A LTR ERVK 1 471 -57 3 781 362 345 11 68 chr12 25715320 25715510 -95542020 - RMER4A LTR ERVK -280 186 8 3 781 825 100 62 0 chr12 25715728 25715858 -95541672 + B1_Mus1 SINE Alu 6 143 -5 3 781 317 173 0 0 chr12 25716000 25716052 -95541478 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 3 781 730 219 151 11 chr12 25716279 25716464 -95541066 + B3 SINE B2 4 214 -2 3 781 541 279 177 10 chr12 25716524 25716943 -95540587 + L1M4 LINE L1 4122 4610 -1530 3 781 238 277 224 25 chr12 25716969 25717210 -95540320 + L1M4 LINE L1 4696 4984 -1162 3 781 1267 115 33 0 chr12 25717233 25717416 -95540114 - B2_Mm2 SINE B2 -6 189 1 3 781 261 98 0 0 chr12 25717474 25717515 -95540015 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 781 199 259 123 0 chr12 25717530 25717611 -95539919 - MIRm SINE MIR -3 273 183 3 781 392 273 10 0 chr12 25717899 25717998 -95539532 + B3 SINE B2 1 100 -116 3 781 348 275 0 0 chr12 25718145 25718225 -95539305 - ID4_ SINE ID 0 83 4 3 781 222 184 0 0 chr12 25718334 25718372 -95539158 + ID SINE ID 34 71 -153 4 781 263 106 43 0 chr12 25720345 25720392 -95537138 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 781 2745 25 6 6 chr12 25720639 25720965 -95536565 + L1Md_F2 LINE L1 6257 6582 0 4 781 773 48 19 0 chr12 25721584 25721689 -95535841 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 4 781 294 207 17 0 chr12 25722053 25722111 -95535419 - ID4_ SINE ID -7 76 18 4 781 861 287 25 25 chr12 25722426 25722741 -95534789 + L1MA6 LINE L1 5982 6296 -4 4 781 24 32 0 0 chr12 25724205 25724236 -95533294 + AT_rich Low_complexity Low_complexity 1 31 0 4 781 1027 160 6 6 chr12 25727827 25728009 -95529521 - ORR1B2 LTR MaLR -30 337 156 4 781 374 125 0 12 chr12 25728009 25728090 -95529440 + (GA)n Simple_repeat Simple_repeat 2 81 0 4 781 717 239 9 7 chr12 25728116 25728292 -95529238 - ORR1B2 LTR MaLR -219 175 16 4 781 273 209 73 37 chr12 25729736 25729845 -95527685 + Tigger2b DNA MER2_type 70 182 -544 4 781 327 177 0 0 chr12 25729852 25729914 -95527616 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 781 243 312 56 8 chr12 25729914 25730040 -95527490 + Tigger2b DNA MER2_type 210 341 -385 4 781 438 310 98 0 chr12 25730140 25730314 -95527216 + Tigger2b DNA MER2_type 535 725 -1 4 781 665 199 152 26 chr12 25731459 25731650 -95525880 + B3 SINE B2 2 216 0 4 781 23 33 0 0 chr12 25732538 25732568 -95524962 + AT_rich Low_complexity Low_complexity 1 30 0 4 781 21 57 0 0 chr12 25733396 25733431 -95524099 + AT_rich Low_complexity Low_complexity 1 35 0 4 781 541 271 68 93 chr12 25733564 25733872 -95523658 - L1MC4a LINE L1 -531 7351 7045 4 781 919 167 28 0 chr12 25733872 25734016 -95523514 + B1_Mur2 SINE Alu 2 149 0 4 781 541 271 68 93 chr12 25734016 25734105 -95523425 - L1MC4a LINE L1 -838 7044 6964 4 781 275 194 253 27 chr12 25734339 25734484 -95523046 + L1MB8 LINE L1 5974 6151 -27 4 781 24 0 0 0 chr12 25734618 25734642 -95522888 + AT_rich Low_complexity Low_complexity 1 24 0 4 781 1675 37 0 0 chr12 25734658 25734849 -95522681 - B2_Mm1a SINE B2 -2 191 1 4 781 286 209 105 0 chr12 25735098 25735184 -95522346 + (CATG)n Simple_repeat Simple_repeat 2 96 0 4 781 492 215 56 0 chr12 25735334 25735441 -95522089 - B1_Mur2 SINE Alu -35 114 2 4 781 22 0 0 0 chr12 25736225 25736247 -95521283 + AT_rich Low_complexity Low_complexity 1 22 0 4 781 349 259 85 57 chr12 25738030 25738278 -95519252 + MER31A LTR ERV1 5 259 -226 4 781 573 105 0 21 chr12 25739156 25739253 -95518277 + B1_Mus2 SINE Alu 2 96 -51 4 781 349 216 11 33 chr12 25739444 25739535 -95517995 - PB1 SINE Alu -27 100 12 4 781 21 0 0 0 chr12 25739798 25739819 -95517711 + AT_rich Low_complexity Low_complexity 1 21 0 4 781 180 0 0 0 chr12 25739978 25739998 -95517532 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 4 781 423 229 32 48 chr12 25740052 25740176 -95517354 + RSINE1 SINE B4 3 124 -41 4 781 396 0 0 0 chr12 25740176 25740220 -95517310 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 781 24 0 0 0 chr12 25740329 25740353 -95517177 + AT_rich Low_complexity Low_complexity 1 24 0 4 781 323 239 114 14 chr12 25740355 25740495 -95517035 - Charlie1b DNA MER1_type -219 304 151 4 781 238 219 81 14 chr12 25743472 25743546 -95513984 - ID4 SINE ID -4 79 1 4 781 341 205 57 49 chr12 25744934 25744949 -95512581 - ID_B1 SINE B4 -6 218 95 4 781 616 115 9 37 chr12 25744949 25745057 -95512473 - B1_Mus2 SINE Alu -29 118 14 4 781 726 207 7 14 chr12 25745110 25745252 -95512278 + ID_B1 SINE B4 83 223 -1 4 781 1634 187 132 23 chr12 25746254 25746686 -95510844 + Lx9 LINE L1 7166 7644 0 4 781 189 0 0 0 chr12 25747179 25747200 -95510330 + (A)n Simple_repeat Simple_repeat 1 21 0 4 781 1725 301 61 107 chr12 25748989 25749452 -95508078 - Lx8 LINE L1 0 7473 6994 4 781 337 109 0 35 chr12 25749452 25749509 -95508021 - B2_Mm2 SINE B2 -94 101 47 4 781 1725 301 61 107 chr12 25749509 25749541 -95507989 - Lx8 LINE L1 0 6993 6959 4 781 1374 73 6 28 chr12 25749541 25749723 -95507807 - B2_Mm1t SINE B2 -14 179 2 4 781 1725 301 61 107 chr12 25749723 25750058 -95507472 - Lx8 LINE L1 -515 6958 6627 4 781 2584 80 3 0 chr12 25750058 25750384 -95507146 + ORR1A2 LTR MaLR 1 327 0 4 781 1725 279 533 48 chr12 25750384 25750550 -95506980 - Lx8 LINE L1 -847 6626 6379 4 781 245 341 97 46 chr12 25750618 25750855 -95506675 - MLT1J2 LTR MaLR -156 292 44 4 781 1169 14 0 7 chr12 25751576 25751716 -95505814 + (TTTCC)n Simple_repeat Simple_repeat 3 141 0 4 781 313 232 21 0 chr12 25751716 25751811 -95505719 + CT-rich Low_complexity Low_complexity 4 100 0 4 781 65 43 0 0 chr12 25751814 25751907 -95505623 + AT_rich Low_complexity Low_complexity 1 93 0 4 781 220 138 0 65 chr12 25752081 25752143 -95505387 + G-rich Low_complexity Low_complexity 2 59 0 4 781 273 364 116 5 chr12 25752752 25752959 -95504571 - MIR SINE MIR -32 230 1 4 781 276 329 70 14 chr12 25753708 25753850 -95503680 - Lx8 LINE L1 -1221 6252 6103 4 781 674 12 12 0 chr12 25754508 25754591 -95502939 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 781 396 251 125 65 chr12 25754701 25754901 -95502629 + RMER5 LTR ERV1 33 244 -290 4 781 465 212 58 43 chr12 25754971 25755109 -95502421 + RMER5 LTR ERV1 351 490 -44 4 781 269 320 72 0 chr12 25755441 25755566 -95501964 + HAL1 LINE L1 1658 1791 -716 4 781 1803 132 3 128 chr12 25755907 25756224 -95501306 + ORR1A4 LTR MaLR 2 277 -52 4 781 1128 66 0 0 chr12 25756224 25756361 -95501169 + B1_Mus2 SINE Alu 2 138 -9 4 781 229 26 26 26 chr12 25756361 25756400 -95501130 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 781 1803 132 3 128 chr12 25756400 25756456 -95501074 + ORR1A4 LTR MaLR 278 328 -1 4 781 784 130 16 0 chr12 25756472 25756595 -95500935 + MTC LTR MaLR 250 374 -47 4 781 873 180 32 36 chr12 25756592 25756827 -95500703 - ORR1B1 LTR MaLR -137 257 24 4 781 228 276 97 28 chr12 25757188 25757404 -95500126 + Charlie2a DNA MER1_type 1485 1715 -1146 4 781 333 82 0 0 chr12 25757592 25757641 -95499889 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 781 320 307 7 49 chr12 25757686 25757830 -95499700 - B4A SINE B4 -52 240 103 4 781 418 268 125 5 chr12 25758161 25758410 -95499120 - MLT1F1 LTR MaLR -29 625 248 4 781 230 284 37 12 chr12 25758648 25758730 -95498800 + MTEa LTR MaLR 16 99 -280 4 781 492 214 75 25 chr12 25758752 25758872 -95498658 + B1_Mur2 SINE Alu 24 149 0 4 781 723 226 24 132 chr12 25758911 25759206 -95498324 + MTEa LTR MaLR 117 379 0 4 781 952 207 70 5 chr12 25759905 25760104 -95497426 - B3 SINE B2 -4 212 1 4 781 732 196 190 0 chr12 25760372 25760535 -95496995 - B3 SINE B2 -14 202 9 4 781 909 67 0 0 chr12 25760551 25760685 -95496845 + (TC)n Simple_repeat Simple_repeat 1 134 0 4 781 663 125 89 0 chr12 25760687 25760799 -95496731 - B1_Mus2 SINE Alu -13 134 13 4 781 413 359 92 27 chr12 25761659 25761951 -95495579 + MLT1G3 LTR MaLR 14 324 -271 4 781 677 188 8 0 chr12 25761969 25762097 -95495433 + B1_Mur1 SINE Alu 12 140 -9 4 781 563 268 174 50 chr12 25762195 25762454 -95495076 + B4A SINE B4 2 292 0 4 781 2480 72 19 0 chr12 25762481 25762802 -95494728 - ORR1A2 LTR MaLR 0 327 1 4 781 241 274 60 26 chr12 25762997 25763113 -95494417 - Charlie2b DNA MER1_type -3 2779 2660 4 781 783 261 14 27 chr12 25763336 25763557 -95493973 + MTEa LTR MaLR 2 219 -160 4 781 238 240 11 176 chr12 25763846 25763937 -95493593 - B1F SINE Alu 0 149 74 4 781 586 330 10 37 chr12 25763987 25764286 -95493244 - B4A SINE B4 0 292 2 4 781 349 243 0 0 chr12 25764287 25764357 -95493173 - B1F2 SINE Alu -65 84 15 4 781 269 200 75 112 chr12 25764871 25764978 -95492552 - B1F1 SINE Alu -4 113 11 4 781 508 298 120 5 chr12 25765223 25765432 -95492098 - B4A SINE B4 -11 281 49 4 781 399 235 0 12 chr12 25765670 25765752 -95491778 + ID4_ SINE ID 1 81 -2 4 781 408 155 0 0 chr12 25765763 25765834 -95491696 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 4 781 740 250 34 0 chr12 25765834 25766010 -95491520 - B3A SINE B2 -16 182 1 4 781 653 314 44 33 chr12 25766535 25766805 -95490725 - B4A SINE B4 -2 290 18 4 781 323 182 120 10 chr12 25766853 25766953 -95490577 + PB1D7 SINE Alu 1 111 -9 4 781 422 285 29 44 chr12 25766963 25767099 -95490431 + ID_B1 SINE B4 84 217 -7 4 781 449 47 0 15 chr12 25767111 25767176 -95490354 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 781 215 29 0 81 chr12 25767259 25767280 -95490250 + (T)n Simple_repeat Simple_repeat 1 20 0 4 781 1663 36 0 0 chr12 25767280 25767472 -95490058 - B2_Mm1a SINE B2 -1 192 1 4 781 215 29 0 81 chr12 25767472 25767487 -95490043 + (T)n Simple_repeat Simple_repeat 1 14 0 4 781 25 51 0 0 chr12 25767538 25767577 -95489953 + AT_rich Low_complexity Low_complexity 1 39 0 4 781 309 51 0 0 chr12 25768896 25768935 -95488595 + (CGGGG)n Simple_repeat Simple_repeat 4 42 0 4 781 300 148 66 0 chr12 25769312 25769373 -95488157 - MER44D DNA MER2_type -597 108 44 4 781 405 0 0 0 chr12 25770005 25770050 -95487480 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 781 264 122 0 0 chr12 25770505 25770546 -95486984 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 781 287 274 31 10 chr12 25770550 25770646 -95486884 - L1MA4 LINE L1 -359 5941 5844 4 781 474 277 30 37 chr12 25770734 25770869 -95486661 + RSINE1 SINE B4 3 136 -29 4 781 1016 201 5 14 chr12 25771092 25771304 -95486226 + MTD LTR MaLR 3 212 -207 4 781 250 237 17 0 chr12 25771392 25771451 -95486079 + PB1D9 SINE Alu 42 101 -19 4 781 887 142 13 40 chr12 25771453 25771751 -95485779 + GA-rich Low_complexity Low_complexity 1 290 0 4 781 796 232 59 111 chr12 25771769 25772331 -95485199 + MTC-int LTR MaLR 100 649 -609 4 781 1532 175 101 30 chr12 25772620 25773027 -95484503 + RMER10A LTR ERVL 1 436 -6 4 781 321 26 0 0 chr12 25773309 25773347 -95484183 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 781 1391 90 37 0 chr12 25773675 25773863 -95483667 - B2_Mm2 SINE B2 0 195 1 4 781 2093 129 56 6 chr12 25774035 25774377 -95483153 + RLTR15 LTR ERVK 1 359 0 5 781 202 143 0 39 chr12 25774746 25774797 -95482733 + CT-rich Low_complexity Low_complexity 1 49 0 5 781 225 180 0 0 chr12 25774802 25774852 -95482678 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 781 642 60 0 0 chr12 25774854 25774937 -95482593 + (GA)n Simple_repeat Simple_repeat 1 83 0 5 781 975 38 104 15 chr12 25775507 25775642 -95481888 - B1_Mm SINE Alu 0 147 1 5 781 247 296 12 0 chr12 25776170 25776251 -95481279 + ID4_ SINE ID 2 83 0 5 781 1373 72 27 22 chr12 25776358 25776543 -95480987 + B2_Mm2 SINE B2 3 188 -7 5 781 1330 188 9 0 chr12 25776705 25776929 -95480601 - URR1A DNA MER1_type 0 226 1 5 781 264 59 0 0 chr12 25777578 25777612 -95479918 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 781 195 69 0 0 chr12 25778963 25778992 -95478538 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 781 201 176 0 0 chr12 25779395 25779429 -95478101 + A-rich Low_complexity Low_complexity 1 34 0 5 781 183 184 0 0 chr12 25779956 25779994 -95477536 + T-rich Low_complexity Low_complexity 1 38 0 5 781 432 0 0 0 chr12 25783262 25783310 -95474220 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 781 23 68 0 0 chr12 25783657 25783701 -95473829 + GC_rich Low_complexity Low_complexity 1 44 0 5 781 207 326 11 21 chr12 25783945 25784039 -95473491 + GA-rich Low_complexity Low_complexity 1 93 0 5 781 24 0 0 0 chr12 25784495 25784519 -95473011 + GC_rich Low_complexity Low_complexity 1 24 0 5 781 21 0 0 0 chr12 25785275 25785296 -95472234 + AT_rich Low_complexity Low_complexity 1 21 0 5 781 1629 312 133 37 chr12 25786778 25787246 -95470284 - Lx9 LINE L1 -174 7470 6927 5 781 894 134 250 0 chr12 25787246 25787418 -95470112 + B3 SINE B2 2 216 0 5 781 1629 312 133 37 chr12 25787418 25787898 -95469632 - Lx9 LINE L1 -718 6926 6431 5 781 209 268 36 0 chr12 25788012 25788068 -95469462 + GA-rich Low_complexity Low_complexity 3 60 0 5 781 288 245 30 60 chr12 25788073 25788173 -95469357 - Lx9 LINE L1 -1208 6436 6340 5 781 585 0 0 0 chr12 25788173 25788238 -95469292 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 781 780 11 0 0 chr12 25788239 25788328 -95469202 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 5 781 292 308 13 0 chr12 25788590 25788668 -95468862 + CT-rich Low_complexity Low_complexity 4 82 0 5 781 1356 118 9 26 chr12 25789240 25789466 -95468064 + URR1A DNA MER1_type 5 226 0 5 781 342 0 0 0 chr12 25789971 25790009 -95467521 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 781 522 0 0 0 chr12 25790009 25790066 -95467464 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 781 547 164 8 36 chr12 25790445 25790562 -95466968 + B1_Mm SINE Alu 5 146 -1 5 781 206 229 0 0 chr12 25790562 25790610 -95466920 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 5 781 382 266 52 26 chr12 25791087 25791203 -95466327 - MLT1J1 LTR MaLR -325 119 1 5 781 221 362 0 0 chr12 25791996 25792065 -95465465 + (CCCA)n Simple_repeat Simple_repeat 3 71 0 5 781 201 306 0 0 chr12 25792076 25792187 -95465343 + (TCCA)n Simple_repeat Simple_repeat 2 112 0 5 781 585 141 0 0 chr12 25792227 25792326 -95465204 + (TCCA)n Simple_repeat Simple_repeat 1 99 0 5 781 291 203 0 0 chr12 25792378 25792442 -95465088 + (TCCA)n Simple_repeat Simple_repeat 4 67 0 5 781 479 345 88 27 chr12 25792454 25792865 -95464665 - L2a LINE L2 -22 3404 2969 5 781 327 222 0 0 chr12 25792952 25793015 -95464515 - B1F1 SINE Alu -86 63 1 5 781 206 0 69 0 chr12 25794299 25794328 -95463202 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 781 719 173 65 0 chr12 25794330 25794469 -95463061 - B1_Mur3 SINE Alu 0 149 2 5 781 228 286 52 0 chr12 25794541 25794618 -95462912 - PB1D10 SINE Alu -2 115 35 5 781 291 54 0 0 chr12 25794734 25794771 -95462759 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 781 483 299 7 7 chr12 25794784 25794929 -95462601 - RSINE1 SINE B4 -19 146 2 5 781 201 39 0 0 chr12 25794949 25794975 -95462555 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 5 781 310 247 37 0 chr12 25794985 25795066 -95462464 + ID_B1 SINE B4 84 167 -57 5 781 521 0 31 0 chr12 25796087 25796151 -95461379 + (TTTA)n Simple_repeat Simple_repeat 2 67 0 5 781 254 316 24 48 chr12 25796151 25796225 -95461305 - ID4_ SINE ID -7 76 3 5 781 259 217 115 0 chr12 25796704 25796776 -95460754 - ID4 SINE ID -59 93 15 5 781 2193 140 32 5 chr12 25797082 25797456 -95460074 + ORR1C2 LTR MaLR 1 384 0 5 781 185 301 68 0 chr12 25797794 25797867 -95459663 + MER5A DNA MER1_type 26 103 -86 5 781 438 139 0 0 chr12 25798580 25798652 -95458878 + (TCC)n Simple_repeat Simple_repeat 3 74 0 5 781 2131 157 11 16 chr12 25798897 25799273 -95458257 + ORR1D1 LTR MaLR 1 374 0 5 781 549 0 0 0 chr12 25800548 25800609 -95456921 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 781 244 19 115 0 chr12 25800718 25800770 -95456760 + (TGG)n Simple_repeat Simple_repeat 1 58 0 5 781 559 90 23 62 chr12 25800770 25800947 -95456583 + G-rich Low_complexity Low_complexity 3 172 0 5 781 214 303 15 0 chr12 25801021 25801087 -95456443 - B4A SINE B4 -225 67 1 5 781 554 304 23 17 chr12 25801920 25802097 -95455433 + B3A SINE B2 4 181 -17 5 781 291 270 0 0 chr12 25802102 25802202 -95455328 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 781 181 169 0 33 chr12 25802213 25802274 -95455256 + CT-rich Low_complexity Low_complexity 1 59 0 5 781 318 266 0 0 chr12 25802279 25802427 -95455103 + CT-rich Low_complexity Low_complexity 1 148 0 5 781 301 233 6 6 chr12 25802427 25802591 -95454939 + (CA)n Simple_repeat Simple_repeat 1 164 0 5 781 222 37 0 0 chr12 25802693 25802720 -95454810 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 781 21 0 0 0 chr12 25804780 25804801 -95452729 + AT_rich Low_complexity Low_complexity 1 21 0 5 781 6342 63 18 5 chr12 25804803 25805673 -95451857 - L1_Mus3 LINE L1 -6 6632 5751 5 781 212 266 219 0 chr12 25805977 25806041 -95451489 + ID4 SINE ID 3 80 -3 5 781 187 175 17 17 chr12 25806565 25806623 -95450907 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 781 609 332 84 56 chr12 25807433 25807755 -95449775 - MLT1B LTR MaLR -15 375 45 5 781 728 279 99 63 chr12 25808049 25808382 -95449148 - ORR1E LTR MaLR -11 348 4 5 781 312 342 58 0 chr12 25808509 25808664 -95448866 + RSINE1 SINE B4 2 165 0 5 781 434 224 36 36 chr12 25811290 25811429 -95446101 - B4A SINE B4 -153 139 1 5 781 384 284 83 68 chr12 25812713 25812979 -95444551 + B4A SINE B4 2 281 -11 5 781 498 259 202 6 chr12 25813295 25813458 -95444072 + B3A SINE B2 4 198 0 5 781 772 246 119 16 chr12 25815005 25815249 -95442281 + B4A SINE B4 2 270 -22 5 781 464 135 36 0 chr12 25815326 25815437 -95442093 + GA-rich Low_complexity Low_complexity 1 115 0 5 781 1212 34 0 0 chr12 25815701 25815848 -95441682 + B1_Mus2 SINE Alu 1 147 0 5 781 260 119 17 0 chr12 25815850 25815909 -95441621 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 5 781 829 320 108 14 chr12 25815912 25816273 -95441257 + MLT1C LTR MaLR 64 458 -9 5 781 197 218 55 0 chr12 25817384 25817439 -95440091 - MIRb SINE MIR -97 171 114 5 781 180 0 0 0 chr12 25818260 25818280 -95439250 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 781 801 183 0 27 chr12 25819116 25819255 -95438275 + B1_Mur2 SINE Alu 1 136 -13 5 781 234 0 0 0 chr12 25819255 25819281 -95438249 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 781 505 182 61 43 chr12 25819488 25819603 -95437927 + MTC LTR MaLR 3 119 -302 5 781 595 180 31 80 chr12 25819603 25819766 -95437764 + RMER1B Other Other 881 1035 -31 5 781 2305 128 11 3 chr12 25819766 25820125 -95437405 + MTC LTR MaLR 52 413 -8 5 782 498 297 144 78 chr12 25821410 25821757 -95435773 + MTE2a LTR MaLR 5 374 -5 5 782 204 258 104 15 chr12 25825634 25825701 -95431829 - MIRm SINE MIR -105 171 99 5 782 279 123 61 12 chr12 25825917 25825999 -95431531 + GA-rich Low_complexity Low_complexity 2 87 0 5 782 886 132 13 26 chr12 25825982 25826214 -95431316 + G-rich Low_complexity Low_complexity 1 228 0 5 782 324 0 0 0 chr12 25826875 25826911 -95430619 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 782 225 0 0 0 chr12 25826989 25827014 -95430516 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 782 345 272 0 64 chr12 25827959 25828069 -95429461 - PB1 SINE Alu -7 120 18 5 782 462 325 62 4 chr12 25829085 25829329 -95428201 - L1MA5 LINE L1 -4 6296 6039 5 782 651 150 26 9 chr12 25829507 25829621 -95427909 - B1_Mur2 SINE Alu -32 117 2 5 782 378 222 0 92 chr12 25829524 25829633 -95427897 - ID_B1 SINE B4 -46 178 80 5 782 180 176 0 0 chr12 25830413 25830447 -95427083 + G-rich Low_complexity Low_complexity 5 38 0 5 782 522 0 0 0 chr12 25830506 25830564 -95426966 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 782 1227 102 32 16 chr12 25830583 25830772 -95426758 + B2_Mm1t SINE B2 2 193 0 5 782 252 292 103 10 chr12 25830906 25831003 -95426527 + MLT1B LTR MaLR 1 106 -284 5 782 369 0 0 0 chr12 25831057 25831098 -95426432 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 782 312 294 35 4 chr12 25831398 25831549 -95425981 + MIRb SINE MIR 49 217 -51 5 782 1014 239 5 27 chr12 25831566 25831790 -95425740 + ID_B1 SINE B4 6 224 0 5 782 1021 124 24 0 chr12 25832716 25832885 -95424645 - URR1A DNA MER1_type 0 226 54 5 782 265 252 0 27 chr12 25833727 25833837 -95423693 + CT-rich Low_complexity Low_complexity 2 108 0 5 782 22 56 0 0 chr12 25834169 25834205 -95423325 + AT_rich Low_complexity Low_complexity 1 36 0 5 782 456 310 18 0 chr12 25835221 25835334 -95422196 - B1F1 SINE Alu -1 148 34 5 782 246 364 82 44 chr12 25835334 25835356 -95422174 - ID_B1 SINE B4 -1 223 84 5 782 508 232 49 43 chr12 25835958 25836120 -95421410 - RSINE1 SINE B4 0 165 3 6 782 1003 115 0 33 chr12 25836232 25836370 -95421160 + B1_Mus1 SINE Alu 1 135 -13 6 782 261 0 0 0 chr12 25836370 25836399 -95421131 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 782 1003 115 0 33 chr12 25836399 25836413 -95421117 + B1_Mus1 SINE Alu 136 148 0 6 782 414 0 0 0 chr12 25836582 25836628 -95420902 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 782 1122 175 121 0 chr12 25836748 25836954 -95420576 + MTC LTR MaLR 1 231 -190 6 782 696 157 0 0 chr12 25836953 25837061 -95420469 - MT2A LTR ERVL -425 108 1 6 782 550 86 0 20 chr12 25838574 25838673 -95418857 - B1_Mus1 SINE Alu -27 93 1 6 782 499 263 120 48 chr12 25841259 25841467 -95416063 + ID_B1 SINE B4 2 224 0 6 782 24 0 0 0 chr12 25841467 25841491 -95416039 + AT_rich Low_complexity Low_complexity 1 24 0 6 782 270 260 173 0 chr12 25844436 25844540 -95412990 - PB1 SINE Alu -5 122 1 6 782 261 0 0 0 chr12 25845472 25845501 -95412029 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 6 782 403 291 153 22 chr12 25845586 25845723 -95411807 + MIRb SINE MIR 27 181 -87 6 782 300 266 0 0 chr12 25848725 25848789 -95408741 - MIR SINE MIR -87 121 58 6 782 372 179 0 0 chr12 25849065 25849143 -95408387 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 782 198 221 69 56 chr12 25850620 25850692 -95406838 + L2c LINE L2 3266 3338 -49 6 782 413 280 211 13 chr12 25851848 25852076 -95405454 + Lx8 LINE L1 6983 7255 -218 6 782 288 170 0 0 chr12 25852110 25852163 -95405367 + (TATG)n Simple_repeat Simple_repeat 4 56 0 6 782 456 239 14 50 chr12 25853470 25853604 -95403926 - B1_Mur2 SINE Alu -2 147 17 6 782 674 228 198 11 chr12 25853813 25853974 -95403556 + ID_B1 SINE B4 4 194 -30 6 782 441 0 0 0 chr12 25853974 25854023 -95403507 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 782 674 228 198 11 chr12 25854023 25854043 -95403487 + ID_B1 SINE B4 195 219 -5 6 782 441 76 0 0 chr12 25855148 25855214 -95402316 + (TC)n Simple_repeat Simple_repeat 2 67 0 6 782 1247 41 14 0 chr12 25855214 25855360 -95402170 - B1_Mus1 SINE Alu 0 148 1 6 782 324 0 0 0 chr12 25856354 25856390 -95401140 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 782 571 319 170 3 chr12 25856412 25856701 -95400829 - MLT2D LTR ERVL -77 337 1 6 782 225 170 0 41 chr12 25856921 25856970 -95400560 + T-rich Low_complexity Low_complexity 5 51 0 6 782 201 229 0 20 chr12 25857792 25857841 -95399689 + MIRb SINE MIR 173 220 -48 6 782 756 33 0 0 chr12 25858998 25859089 -95398441 + (GA)n Simple_repeat Simple_repeat 1 91 0 6 782 226 286 0 28 chr12 25859135 25859207 -95398323 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 6 782 511 262 46 31 chr12 25859278 25859408 -95398122 - B3A SINE B2 0 198 67 6 782 338 290 64 17 chr12 25859411 25859611 -95397919 - B4 SINE B4 -48 244 1 6 782 1560 210 69 15 chr12 25860060 25860393 -95397137 - MTD LTR MaLR 0 419 69 6 782 247 130 37 0 chr12 25861412 25861466 -95396064 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 782 230 250 0 18 chr12 25861675 25861732 -95395798 + MTC LTR MaLR 4 59 -362 6 782 493 241 20 8 chr12 25861751 25861874 -95395656 + MTC LTR MaLR 293 419 0 6 782 505 250 23 15 chr12 25862252 25862382 -95395148 - MTEa LTR MaLR 0 379 249 6 782 204 40 0 0 chr12 25862450 25862475 -95395055 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 6 782 704 270 11 35 chr12 25864391 25864586 -95392944 + ID_B1 SINE B4 8 205 -87 6 782 200 143 0 23 chr12 25865736 25865779 -95391751 + C-rich Low_complexity Low_complexity 2 43 0 6 782 528 251 38 83 chr12 25865843 25866020 -95391510 - B3A SINE B2 -7 209 5 6 782 323 274 68 10 chr12 25866034 25866137 -95391393 - PB1D10 SINE Alu -8 109 1 6 782 1183 284 46 30 chr12 25866137 25866504 -95391026 + Charlie1a DNA MER1_type 542 914 -541 6 782 829 243 39 6 chr12 25866527 25866709 -95390821 + ID_B1 SINE B4 36 223 -1 6 782 388 346 140 21 chr12 25866723 25867059 -95390471 + Charlie1a DNA MER1_type 935 1310 -145 6 782 311 258 15 0 chr12 25867069 25867135 -95390395 - ID4_ SINE ID -9 74 8 6 782 245 232 18 18 chr12 25867203 25867260 -95390270 - ID_B1 SINE B4 -99 125 69 6 782 297 269 62 99 chr12 25867266 25867287 -95390243 + Charlie1a DNA MER1_type 1285 1303 -152 6 782 820 280 28 0 chr12 25867287 25867501 -95390029 - ID_B1 SINE B4 -3 221 2 6 782 297 269 62 99 chr12 25867501 25867640 -95389890 + Charlie1a DNA MER1_type 1304 1439 -16 6 782 849 194 0 7 chr12 25869068 25869208 -95388322 - B1_Mur4 SINE Alu -11 139 1 6 782 312 264 0 0 chr12 25869211 25869283 -95388247 + PB1D10 SINE Alu 6 77 -40 6 782 328 72 18 18 chr12 25869335 25869392 -95388138 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 6 782 953 287 18 25 chr12 25869518 25869797 -95387733 + B4 SINE B4 2 278 -14 6 782 801 56 0 0 chr12 25869815 25869922 -95387608 + (CA)n Simple_repeat Simple_repeat 2 108 0 6 782 284 291 173 0 chr12 25869922 25870032 -95387498 + MLT1F2 LTR MaLR 432 560 0 6 782 393 374 29 0 chr12 25870051 25870190 -95387340 + MIR SINE MIR 18 160 -102 6 782 594 0 0 0 chr12 25870983 25871049 -95386481 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 782 481 318 11 131 chr12 25871646 25871914 -95385616 - MTEa LTR MaLR -143 236 1 6 782 1225 279 31 31 chr12 25872069 25872318 -95385212 - ORR1E LTR MaLR 0 359 110 6 782 1393 164 230 0 chr12 25872318 25872622 -95384908 - ORR1D1 LTR MaLR 0 374 1 6 782 1225 279 31 31 chr12 25872622 25872731 -95384799 - ORR1E LTR MaLR -250 109 1 6 782 363 331 108 42 chr12 25872864 25873031 -95384499 + MER63A DNA AcHobo 30 207 -3 6 782 337 237 52 31 chr12 25873508 25873604 -95383926 - MIRc SINE MIR -101 167 70 6 782 23 0 0 0 chr12 25874093 25874116 -95383414 + AT_rich Low_complexity Low_complexity 1 23 0 6 782 189 121 0 0 chr12 25876729 25876762 -95380768 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 782 774 199 7 14 chr12 25876859 25877007 -95380523 - B1_Mur1 SINE Alu -2 147 1 6 782 1472 152 0 0 chr12 25878466 25878690 -95378840 - URR1A DNA MER1_type 0 226 3 6 782 884 282 54 21 chr12 25879694 25879973 -95377557 + B4A SINE B4 1 288 -4 6 782 188 143 24 0 chr12 25881468 25881510 -95376020 + CT-rich Low_complexity Low_complexity 4 46 0 6 782 1140 8 0 0 chr12 25882514 25882643 -95374887 + (TCTCCC)n Simple_repeat Simple_repeat 3 131 0 6 782 291 309 0 47 chr12 25883645 25883730 -95373800 - ID4_ SINE ID -1 82 2 6 782 313 287 103 31 chr12 25883732 25883829 -95373701 - ID_B1 SINE B4 -3 221 118 6 782 326 336 64 0 chr12 25884372 25884482 -95373048 - MLT1C LTR MaLR 0 467 351 6 782 414 248 39 23 chr12 25884858 25884986 -95372544 - L1MA7 LINE L1 -5 6286 6157 6 782 249 216 0 13 chr12 25884984 25885059 -95372471 + L1MA7 LINE L1 6069 6142 -149 6 782 2058 264 136 32 chr12 25885479 25886198 -95371332 - Charlie1 DNA MER1_type -559 2222 1429 6 782 1046 242 9 0 chr12 25886956 25887167 -95370363 - B3 SINE B2 0 216 4 6 782 468 0 0 0 chr12 25887505 25887557 -95369973 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 782 387 0 0 0 chr12 25887557 25887599 -95369931 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 782 596 303 75 9 chr12 25889032 25889245 -95368285 + B4A SINE B4 66 292 0 6 782 330 26 0 0 chr12 25889362 25889401 -95368129 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 782 255 254 197 0 chr12 25889448 25889519 -95368011 - MTEa LTR MaLR 0 379 295 6 782 9080 136 19 8 chr12 25889848 25892153 -95365377 - Lx LINE L1 -3 6651 4323 6 782 201 256 0 0 chr12 25892436 25892475 -95365055 + polypyrimidine Low_complexity Low_complexity 4 42 0 6 782 222 188 41 20 chr12 25893435 25893484 -95364046 - B1_Mur2 SINE Alu -16 133 84 6 782 21 36 0 0 chr12 25893539 25893567 -95363963 + AT_rich Low_complexity Low_complexity 1 28 0 6 782 216 0 0 0 chr12 25893625 25893649 -95363881 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6 782 516 264 119 62 chr12 25895036 25895651 -95361879 - L1MC3 LINE L1 -272 7723 6865 6 782 847 194 6 24 chr12 25895879 25896043 -95361487 - B4 SINE B4 -10 282 122 6 782 277 254 154 60 chr12 25895938 25896055 -95361475 - B1_Mus1 SINE Alu -2 146 19 6 782 1665 190 106 0 chr12 25897307 25897628 -95359902 - ORR1D2 LTR MaLR -8 362 8 6 782 261 312 53 30 chr12 25897649 25897781 -95359749 - MLT1J LTR MaLR -31 481 347 6 782 202 118 29 0 chr12 25897801 25897835 -95359695 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 782 221 226 19 19 chr12 25897947 25898001 -95359529 + CT-rich Low_complexity Low_complexity 1 54 0 6 782 216 0 0 0 chr12 25898371 25898395 -95359135 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 6 782 348 266 59 42 chr12 25899565 25899683 -95357847 - LTR33B LTR ERVL 0 503 384 6 782 1110 214 42 28 chr12 25900843 25901122 -95356408 + B4A SINE B4 1 285 -7 6 782 300 27 0 0 chr12 25901122 25901159 -95356371 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 782 252 200 0 0 chr12 25901167 25901227 -95356303 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 782 649 175 17 10 chr12 25901240 25901537 -95355993 + (CA)n Simple_repeat Simple_repeat 1 299 0 6 782 360 109 18 0 chr12 25901537 25901592 -95355938 + HAL1-3A_ME LINE L1 1975 2030 -828 6 782 262 248 50 50 chr12 25901801 25901920 -95355610 - MER63A DNA AcHobo 0 210 92 6 782 208 255 19 9 chr12 25903622 25903729 -95353801 + G-rich Low_complexity Low_complexity 3 110 0 6 782 186 128 0 0 chr12 25904001 25904040 -95353490 + (G)n Simple_repeat Simple_repeat 1 39 0 6 782 234 279 88 0 chr12 25904316 25904384 -95353146 + MIRb SINE MIR 130 203 -65 6 782 209 299 141 20 chr12 25905813 25905912 -95351618 + MIR SINE MIR 37 147 -115 6 782 519 329 54 63 chr12 25906181 25906515 -95351015 + MLT1A LTR MaLR 27 357 -17 6 782 229 283 27 108 chr12 25907113 25907224 -95350306 + LTR81B LTR ERV1? 397 498 -895 6 782 209 189 0 0 chr12 25908289 25908326 -95349204 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 782 975 229 64 30 chr12 25908346 25908612 -95348918 - B4 SINE B4 -17 275 1 7 782 259 278 103 93 chr12 25908635 25908742 -95348788 - MLT1C LTR MaLR -357 110 3 7 782 390 298 29 0 chr12 25910786 25910890 -95346640 + RSINE1 SINE B4 42 148 -17 7 782 769 207 57 0 chr12 25910941 25911081 -95346449 - B1_Mur2 SINE Alu 0 149 2 7 782 21 0 0 0 chr12 25911086 25911107 -95346423 + AT_rich Low_complexity Low_complexity 1 21 0 7 782 324 0 0 0 chr12 25912767 25912803 -95344727 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 782 194 125 62 0 chr12 25913146 25913178 -95344352 + L4 LINE RTE 274 307 -1722 7 782 212 307 93 34 chr12 25914272 25914390 -95343140 - MIRc SINE MIR -142 126 2 7 782 392 328 106 17 chr12 25915233 25915413 -95342117 + MIRb SINE MIR 1 196 -72 7 782 180 0 0 0 chr12 25915738 25915758 -95341772 + (AGTTG)n Simple_repeat Simple_repeat 4 23 0 7 782 310 291 94 71 chr12 25917183 25917353 -95340177 + MLT1C LTR MaLR 294 467 0 7 782 21 95 0 0 chr12 25918786 25918849 -95338681 + AT_rich Low_complexity Low_complexity 1 63 0 7 782 519 259 131 34 chr12 25919165 25919341 -95338189 - ID_B1 SINE B4 -31 193 1 7 782 209 291 26 97 chr12 25919393 25919507 -95338023 + MIR SINE MIR 10 115 -147 7 782 5185 54 20 15 chr12 25920973 25921636 -95335894 + L1Md_F2 LINE L1 5917 6582 0 7 782 211 194 0 0 chr12 25921671 25921707 -95335823 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 782 395 259 83 41 chr12 25921754 25921875 -95335655 - B4 SINE B4 -20 272 147 7 782 1055 261 52 42 chr12 25922557 25922845 -95334685 - B4 SINE B4 0 292 2 7 782 320 290 91 61 chr12 25923063 25923228 -95334302 - MER3 DNA MER1_type -23 186 17 7 782 213 303 29 57 chr12 25923445 25923550 -95333980 - MIRm SINE MIR -93 183 82 7 782 296 119 0 17 chr12 25923691 25923751 -95333779 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 782 1047 282 51 16 chr12 25923777 25924033 -95333497 - B4 SINE B4 -27 265 1 7 782 2215 204 5 5 chr12 25924144 25924529 -95333001 + Lx5 LINE L1 6666 7050 0 7 782 194 109 0 42 chr12 25924531 25924579 -95332951 + A-rich Low_complexity Low_complexity 3 48 0 7 782 247 280 27 0 chr12 25926257 25926332 -95331198 + MIR SINE MIR 86 162 -100 7 782 987 274 149 13 chr12 25926332 25926728 -95330802 + L1MB1 LINE L1 5719 6168 0 7 782 298 278 225 30 chr12 25926950 25927150 -95330380 - B4 SINE B4 -53 239 1 7 782 2410 46 0 13 chr12 25927600 25927910 -95329620 - L1_Mus1 LINE L1 -667 5900 5595 7 782 397 56 0 0 chr12 25927911 25927965 -95329565 + L1_Mus1 LINE L1 5898 5951 -616 7 782 1089 136 0 0 chr12 25927969 25928146 -95329384 + (TTC)n Simple_repeat Simple_repeat 3 179 0 7 782 720 189 0 0 chr12 25928146 25928289 -95329241 + CT-rich Low_complexity Low_complexity 1 143 0 7 782 1524 58 5 0 chr12 25928289 25928477 -95329053 - B2_Mm1a SINE B2 -3 190 2 7 782 939 267 21 83 chr12 25928779 25929069 -95328461 + B4A SINE B4 1 272 -20 7 782 22 53 0 35 chr12 25929110 25929126 -95328404 + AT_rich Low_complexity Low_complexity 1 15 0 7 782 1122 98 0 7 chr12 25929126 25929270 -95328260 + B1_Mus1 SINE Alu 1 143 -5 7 782 22 53 0 35 chr12 25929270 25929311 -95328219 + AT_rich Low_complexity Low_complexity 1 41 0 7 782 702 0 0 0 chr12 25929448 25929526 -95328004 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 782 240 154 0 0 chr12 25929931 25929983 -95327547 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 782 402 21 0 0 chr12 25929993 25930040 -95327490 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 782 183 42 0 0 chr12 25930040 25930063 -95327467 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 782 461 326 72 69 chr12 25930900 25931190 -95326340 - B4A SINE B4 0 292 2 7 782 260 274 0 27 chr12 25931317 25931392 -95326138 + (CACCAT)n Simple_repeat Simple_repeat 2 74 0 7 782 437 67 0 32 chr12 25932423 25932485 -95325045 + B1_Mus1 SINE Alu 1 60 -88 7 782 321 161 0 0 chr12 25932488 25932575 -95324955 + GA-rich Low_complexity Low_complexity 94 180 0 7 782 237 180 123 57 chr12 25932577 25932683 -95324847 + RLTR25B LTR ERVK 397 509 -519 7 782 833 38 9 0 chr12 25932621 25932726 -95324804 + B1_Mm SINE Alu 42 147 0 7 782 379 292 159 31 chr12 25933200 25933426 -95324104 + MIRb SINE MIR 14 268 0 7 782 332 86 75 19 chr12 25935016 25935123 -95322407 + (TG)n Simple_repeat Simple_repeat 2 114 0 7 782 399 229 54 27 chr12 25935195 25935307 -95322223 - B4 SINE B4 -177 115 1 7 782 216 182 0 0 chr12 25936107 25936151 -95321379 + CT-rich Low_complexity Low_complexity 2 45 0 7 782 969 263 163 27 chr12 25937015 25937165 -95320365 + MTEa LTR MaLR 1 185 -194 7 782 540 0 0 0 chr12 25937165 25937225 -95320305 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 782 969 263 163 27 chr12 25937225 25937406 -95320124 + MTEa LTR MaLR 186 376 -3 7 782 220 368 19 19 chr12 25937451 25937559 -95319971 - MIR SINE MIR -91 171 64 7 782 1279 259 36 119 chr12 25938465 25938830 -95318700 - Lx8 LINE L1 -211 7262 6949 7 782 483 18 0 0 chr12 25938830 25938886 -95318644 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 782 330 91 0 0 chr12 25938888 25938943 -95318587 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 7 782 1279 259 36 119 chr12 25938943 25939051 -95318479 - Lx8 LINE L1 -525 6948 6827 7 782 522 0 0 0 chr12 25939269 25939327 -95318203 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 782 248 341 98 8 chr12 25940307 25940439 -95317091 - MIR3 SINE MIR -7 201 65 7 782 1350 230 85 41 chr12 25940722 25941085 -95316445 + MTE2b LTR MaLR 1 379 0 7 782 780 219 0 0 chr12 25942070 25942207 -95315323 - B3 SINE B2 -78 138 2 7 782 336 235 223 27 chr12 25942872 25943060 -95314470 - URR1B DNA MER1_type 0 225 1 7 782 576 276 132 0 chr12 25943321 25943578 -95313952 + L1MB3 LINE L1 5635 5925 -258 7 782 590 313 87 53 chr12 25943589 25944104 -95313426 + L1M5 LINE L1 5353 5885 -309 7 782 361 154 12 49 chr12 25944128 25944210 -95313320 + L1MB3 LINE L1 5995 6073 -110 7 782 2181 139 72 6 chr12 25944212 25944574 -95312956 - ORR1B1 LTR MaLR -8 386 1 7 782 1425 130 0 43 chr12 25944574 25944635 -95312895 - ORR1B1-int LTR MaLR 0 1509 1458 7 782 952 90 75 0 chr12 25944635 25944762 -95312768 + B1_Mm SINE Alu 1 137 -10 7 782 315 0 0 0 chr12 25944762 25944797 -95312733 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 782 1425 130 0 43 chr12 25944803 25944974 -95312556 - ORR1B1-int LTR MaLR -52 1457 1287 7 782 315 290 110 72 chr12 25945324 25945588 -95311942 + B4A SINE B4 1 274 -18 7 782 214 362 90 16 chr12 25947666 25947854 -95309676 - L2c LINE L2 -137 3250 3049 7 782 243 247 0 0 chr12 25948056 25948129 -95309401 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 782 181 200 67 0 chr12 25948492 25948537 -95308993 + L3 LINE CR1 930 977 -3512 7 782 2075 142 73 138 chr12 25948627 25949077 -95308453 + MTC LTR MaLR 1 421 0 7 783 358 259 50 59 chr12 25953452 25953571 -95303959 + MIR SINE MIR 109 226 -36 7 783 458 312 0 72 chr12 25954996 25955148 -95302382 - ID_B1 SINE B4 0 224 84 7 783 227 191 0 16 chr12 25955519 25955583 -95301947 + GA-rich Low_complexity Low_complexity 3 65 0 7 783 441 275 24 24 chr12 25955846 25956010 -95301520 + RSINE1 SINE B4 2 165 0 7 783 272 312 104 21 chr12 25956242 25956386 -95301144 + MER5B DNA MER1_type 1 156 -22 7 783 365 278 96 99 chr12 25956560 25956749 -95300781 + B4 SINE B4 2 198 -94 7 783 663 13 0 0 chr12 25956749 25956825 -95300705 + (GA)n Simple_repeat Simple_repeat 2 77 0 7 783 365 278 96 99 chr12 25956825 25956927 -95300603 + B4 SINE B4 199 291 -1 7 783 573 15 0 0 chr12 25956932 25956998 -95300532 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 783 371 230 42 84 chr12 25956998 25957093 -95300437 + B4 SINE B4 202 292 0 7 783 183 314 20 0 chr12 25958167 25958218 -95299312 + L2c LINE L2 3108 3159 -228 7 783 264 191 0 0 chr12 25958294 25958341 -95299189 - L2b LINE L2 0 3375 3329 7 783 287 314 103 13 chr12 25958899 25959054 -95298476 - MIR SINE MIR -10 252 84 7 783 845 129 50 0 chr12 25960389 25960529 -95297001 + B1_Mus2 SINE Alu 1 147 0 7 783 416 223 10 60 chr12 25960667 25960767 -95296763 + MTD LTR MaLR 325 419 0 7 783 372 206 14 14 chr12 25960969 25961043 -95296487 - B4A SINE B4 -76 216 143 7 783 1447 207 143 0 chr12 25961098 25961426 -95296104 - MTEa LTR MaLR -4 375 1 7 783 484 335 80 52 chr12 25961563 25961988 -95295542 - HERV16-int LTR ERVL -2870 2126 1690 7 783 917 267 33 33 chr12 25962323 25962563 -95294967 + B4A SINE B4 53 292 0 7 783 252 0 0 0 chr12 25962979 25963007 -95294523 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 7 783 292 298 74 70 chr12 25963009 25963280 -95294250 - RLTR15 LTR ERVK -12 347 76 7 783 367 206 10 30 chr12 25963288 25963388 -95294142 - RLTR15 LTR ERVK -229 130 33 7 783 221 119 0 23 chr12 25964227 25964270 -95293260 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 7 783 324 344 7 37 chr12 25964285 25964329 -95293201 + polypyrimidine Low_complexity Low_complexity 91 132 0 7 783 614 49 12 0 chr12 25964329 25964411 -95293119 + (TC)n Simple_repeat Simple_repeat 2 84 0 7 783 1130 90 0 0 chr12 25964411 25964556 -95292974 - B1_Mus2 SINE Alu -1 146 2 7 783 324 344 7 37 chr12 25964556 25964646 -95292884 + polypyrimidine Low_complexity Low_complexity 2 90 0 7 783 1179 170 32 0 chr12 25964932 25965150 -95292380 + URR1B DNA MER1_type 1 225 0 7 783 189 0 0 0 chr12 25966184 25966205 -95291325 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 783 551 288 47 75 chr12 25966486 25966499 -95291031 + CYRA11_Mm Unknown Y-chromosome 161 239 -378 8 783 1261 192 9 18 chr12 25966499 25966717 -95290813 - URR1B DNA MER1_type -9 216 1 8 783 551 288 47 75 chr12 25966717 25966741 -95290789 + CYRA11_Mm Unknown Y-chromosome 240 408 -209 8 783 494 311 70 27 chr12 25966718 25966890 -95290640 + ID_B1 SINE B4 68 246 -46 8 783 758 109 29 0 chr12 25966892 25967029 -95290501 + (GAA)n Simple_repeat Simple_repeat 3 143 0 8 783 498 323 99 46 chr12 25967036 25967448 -95290082 - MLT1D LTR MaLR -6 499 66 8 783 186 71 0 0 chr12 25969276 25969304 -95288226 + (T)n Simple_repeat Simple_repeat 1 28 0 8 783 443 252 70 35 chr12 25969562 25969677 -95287853 + B1_Mm SINE Alu 2 120 0 8 783 909 136 3 0 chr12 25969962 25970111 -95287419 + L1Md_F LINE L1 102 231 -6388 8 783 24845 70 3 6 chr12 25970107 25973799 -95283731 + L1Md_F LINE L1 799 4537 -1349 8 783 3174 105 24 7 chr12 25973799 25974261 -95283269 + L1Md_F2 LINE L1 6108 6577 -5 8 783 827 218 5 53 chr12 25974330 25974538 -95282992 + B3A SINE B2 1 198 0 8 783 527 29 14 0 chr12 25975154 25975223 -95282307 + (GA)n Simple_repeat Simple_repeat 1 70 0 8 783 231 224 154 57 chr12 25975477 25975600 -95281930 + L1M5 LINE L1 5580 5714 -526 8 783 450 53 0 0 chr12 25975622 25975679 -95281851 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 783 253 250 67 67 chr12 25976087 25976177 -95281353 + 5S rRNA rRNA 1 90 -31 8 783 709 326 50 8 chr12 25976410 25976651 -95280879 - B4A SINE B4 -40 252 2 8 783 305 318 17 17 chr12 25978032 25978073 -95279457 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 783 528 59 0 0 chr12 25978073 25978141 -95279389 + (TATG)n Simple_repeat Simple_repeat 2 69 0 8 783 305 318 17 17 chr12 25978141 25978275 -95279255 + (TG)n Simple_repeat Simple_repeat 1 136 0 8 783 630 0 0 0 chr12 25979994 25980064 -95277466 + (TTTTG)n Simple_repeat Simple_repeat 3 72 0 8 783 667 304 102 15 chr12 25980322 25980586 -95276944 - B4A SINE B4 -3 289 3 8 783 528 218 57 64 chr12 25980950 25981107 -95276423 - RSINE1 SINE B4 -7 158 3 8 783 4289 204 30 9 chr12 25981144 25982049 -95275481 - Lx9 LINE L1 -24 7620 6598 8 783 444 325 29 29 chr12 25982481 25982652 -95274878 + RMER15 LTR ERVL 341 511 -64 8 783 252 257 84 112 chr12 25983361 25983592 -95273938 - MIR SINE MIR -31 237 14 8 783 896 233 174 106 chr12 25984714 25985093 -95272437 + MTD LTR MaLR 1 405 -14 8 783 279 0 0 0 chr12 25985527 25985558 -95271972 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 8 783 512 254 46 83 chr12 25986091 25986255 -95271275 + ID_B1 SINE B4 69 224 -68 8 783 332 226 0 19 chr12 25986708 25986812 -95270718 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 8 783 657 309 62 18 chr12 25986817 25987044 -95270486 + MT2A LTR ERVL 2 238 -295 8 783 701 292 14 28 chr12 25987083 25987298 -95270232 + MT2A LTR ERVL 242 453 -80 8 783 410 225 0 9 chr12 25987334 25987446 -95270084 + (TG)n Simple_repeat Simple_repeat 2 112 0 8 783 409 246 63 0 chr12 25987589 25987696 -95269834 - PB1D9 SINE Alu -2 147 23 8 783 237 264 75 32 chr12 25987624 25987718 -95269812 - RLTR25B LTR ERVK -534 494 397 8 783 204 40 0 0 chr12 25987923 25987948 -95269582 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 8 783 180 244 264 11 chr12 25989689 25989776 -95267754 + L2b LINE L2 3240 3348 -27 8 783 483 107 0 0 chr12 25990324 25990399 -95267131 + (GA)n Simple_repeat Simple_repeat 1 75 0 8 783 272 279 0 14 chr12 25992775 25992844 -95264686 + GA-rich Low_complexity Low_complexity 2 69 0 8 783 762 43 0 0 chr12 25993117 25993211 -95264319 + (GA)n Simple_repeat Simple_repeat 1 94 0 8 783 225 322 44 0 chr12 25993578 25993668 -95263862 - MIRb SINE MIR -57 211 118 8 783 377 280 10 0 chr12 25995353 25995453 -95262077 - ID_B1 SINE B4 -1 223 123 8 783 277 279 96 24 chr12 25995453 25995478 -95262052 - B1F SINE Alu -1 148 15 8 783 432 193 21 54 chr12 25996000 25996093 -95261437 - PB1D10 SINE Alu 0 117 28 8 783 1251 92 0 0 chr12 25996109 25996326 -95261204 + (TCTA)n Simple_repeat Simple_repeat 1 217 0 8 783 645 277 20 0 chr12 25996350 25996498 -95261032 - RSINE1 SINE B4 -13 152 2 8 783 376 242 51 66 chr12 25998511 25998648 -95258882 - LTR37A LTR ERV1 -6 420 286 8 783 384 22 0 0 chr12 25998661 25998706 -95258824 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 783 309 117 0 0 chr12 25998706 25998766 -95258764 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 783 282 373 100 35 chr12 25999502 25999902 -95257628 + L2 LINE L2 2583 3008 -411 8 783 942 242 99 29 chr12 26000888 26001160 -95256370 + ORR1E LTR MaLR 1 291 -68 1 783 23 0 0 0 chr12 26001688 26001711 -95255819 + AT_rich Low_complexity Low_complexity 1 23 0 2 783 199 169 68 0 chr12 26002234 26002293 -95255237 + CT-rich Low_complexity Low_complexity 1 63 0 3 783 406 349 48 53 chr12 26002359 26002716 -95254814 + MER57D LTR ERV1 48 402 -9 4 783 455 149 23 23 chr12 26003918 26004005 -95253525 - ORR1B1 LTR MaLR -282 112 11 5 783 1251 269 57 9 chr12 26004380 26004412 -95253118 + MTE2b LTR MaLR 19 53 -326 6 783 2264 94 24 59 chr12 26004412 26004751 -95252779 + ORR1A2 LTR MaLR 1 327 0 7 783 1251 269 57 9 chr12 26004751 26005052 -95252478 + MTE2b LTR MaLR 54 368 -11 6 783 25 0 0 0 chr12 26005089 26005114 -95252416 + AT_rich Low_complexity Low_complexity 1 25 0 8 783 773 287 11 11 chr12 26006872 26006954 -95250576 + ID SINE ID 1 82 -142 9 783 308 316 24 73 chr12 26006954 26007077 -95250453 + PB1D7 SINE Alu 1 117 -3 1 783 239 276 32 84 chr12 26007293 26007388 -95250142 + MLT1G LTR MaLR 248 337 -254 1 783 290 176 35 12 chr12 26007497 26007583 -95249947 + CT-rich Low_complexity Low_complexity 4 91 0 1 783 376 296 161 7 chr12 26007664 26007807 -95249723 - Lx8 LINE L1 -207 7266 7102 1 783 1475 293 71 10 chr12 26007852 26007920 -95249610 - Lx8 LINE L1 -452 7021 6943 1 783 486 0 0 0 chr12 26007920 26007974 -95249556 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 783 1475 293 71 10 chr12 26007974 26008412 -95249118 - Lx8 LINE L1 -531 6942 6484 1 783 352 257 28 186 chr12 26008452 26008529 -95249001 - B1F2 SINE Alu 0 149 97 1 783 2474 124 82 8 chr12 26008529 26008920 -95248610 + MTC LTR MaLR 2 421 0 1 783 352 257 28 186 chr12 26008920 26009019 -95248511 - B1F2 SINE Alu -53 96 1 1 783 309 311 74 19 chr12 26008926 26009034 -95248496 - B4 SINE B4 -107 185 72 1 783 461 282 0 26 chr12 26009090 26009203 -95248327 - RSINE1 SINE B4 -54 111 2 1 783 534 250 23 8 chr12 26009542 26009671 -95247859 - B1F1 SINE Alu -9 140 10 1 783 449 310 13 27 chr12 26009671 26009691 -95247839 - ID_B1 SINE B4 -9 215 69 2 783 329 237 10 92 chr12 26010676 26010751 -95246779 + (TCTCTG)n Simple_repeat Simple_repeat 5 72 0 2 783 450 0 0 0 chr12 26010751 26010801 -95246729 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 783 329 237 10 92 chr12 26010801 26010920 -95246610 + (TCTCTG)n Simple_repeat Simple_repeat 2 112 0 2 783 230 331 61 61 chr12 26011352 26011632 -95245898 - L1M7 LINE L1 -5505 713 434 2 783 212 267 225 49 chr12 26012301 26012328 -95245202 - B2_Mm2 SINE B2 -18 177 11 2 783 644 200 17 0 chr12 26012328 26012443 -95245087 - RSINE1 SINE B4 -37 128 12 2 783 505 298 92 38 chr12 26012829 26013014 -95244516 + B3A SINE B2 1 195 -3 2 783 369 131 0 0 chr12 26014791 26014852 -95242678 + (GGA)n Simple_repeat Simple_repeat 2 62 0 2 783 1174 241 84 52 chr12 26015209 26015576 -95241954 - MTE2a LTR MaLR 0 379 1 2 783 21 82 0 0 chr12 26015824 26015873 -95241657 + AT_rich Low_complexity Low_complexity 1 49 0 3 783 21 57 0 0 chr12 26016021 26016056 -95241474 + AT_rich Low_complexity Low_complexity 1 35 0 3 783 414 0 0 0 chr12 26016534 26016580 -95240950 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 783 408 325 13 38 chr12 26016600 26016757 -95240773 - B4A SINE B4 0 292 140 3 783 1367 152 9 9 chr12 26018029 26018254 -95239276 - URR1B DNA MER1_type 0 225 1 3 783 1791 186 54 46 chr12 26018512 26018844 -95238686 + ORR1D1 LTR MaLR 1 337 -37 3 783 1760 205 46 24 chr12 26018844 26019214 -95238316 - ORR1C1 LTR MaLR 0 378 1 3 783 1791 186 54 46 chr12 26019214 26019252 -95238278 + ORR1D1 LTR MaLR 338 374 0 3 783 236 317 72 40 chr12 26019293 26019418 -95238112 - MLT1K LTR MaLR -218 377 249 3 783 190 260 123 0 chr12 26020449 26020522 -95237008 + L2 LINE L2 2536 2617 -802 3 783 253 255 0 0 chr12 26021457 26021508 -95236022 + B1F SINE Alu 50 100 -49 3 783 384 40 0 0 chr12 26021638 26021688 -95235842 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 783 271 247 62 49 chr12 26022691 26022772 -95234758 - ID4_ SINE ID 0 83 2 4 783 470 347 46 35 chr12 26022845 26023105 -95234425 - B4A SINE B4 -6 286 24 4 783 227 218 18 35 chr12 26023144 26023201 -95234329 - ID_B1 SINE B4 -39 185 130 4 783 259 44 44 0 chr12 26023441 26023486 -95234044 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 783 225 276 196 42 chr12 26024727 26024916 -95232614 - L4 LINE RTE -103 1926 1709 4 783 735 214 56 51 chr12 26025049 26025246 -95232284 + B3A SINE B2 1 198 0 4 783 1191 75 0 0 chr12 26025269 26025415 -95232115 - B1_Mus1 SINE Alu 0 148 3 4 783 195 311 77 51 chr12 26025425 26025503 -95232027 - L4 LINE RTE -326 1703 1624 4 783 851 265 38 51 chr12 26026931 26027045 -95230485 + MTEb LTR MaLR 1 118 -261 4 783 2989 46 0 0 chr12 26027045 26027391 -95230139 - ORR1A1 LTR MaLR 0 346 1 4 783 851 265 38 51 chr12 26027391 26027511 -95230019 + MTEb LTR MaLR 119 232 -147 4 783 529 293 56 19 chr12 26027494 26027654 -95229876 - ID_B1 SINE B4 -57 167 2 5 783 502 275 53 15 chr12 26027734 26027867 -95229663 + ID_B1 SINE B4 87 224 0 5 783 203 158 0 0 chr12 26027940 26027978 -95229552 + GA-rich Low_complexity Low_complexity 3 40 0 5 783 851 205 106 20 chr12 26028769 26028933 -95228597 + B3 SINE B2 1 165 -51 5 783 444 67 0 0 chr12 26028933 26028993 -95228537 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 783 851 205 106 20 chr12 26028993 26029027 -95228503 + B3 SINE B2 166 215 -1 5 783 26 0 0 0 chr12 26029809 26029835 -95227695 + AT_rich Low_complexity Low_complexity 1 26 0 5 783 201 74 0 0 chr12 26030209 26030236 -95227294 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 783 838 315 4 30 chr12 26030277 26030292 -95227238 - B4A SINE B4 -7 285 271 5 783 477 0 0 0 chr12 26030292 26030345 -95227185 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 783 838 315 4 30 chr12 26030345 26030591 -95226939 - B4A SINE B4 -22 270 32 5 783 758 273 6 12 chr12 26030913 26031076 -95226454 - RSINE1 SINE B4 -1 164 3 5 783 546 16 0 0 chr12 26031461 26031524 -95226006 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 783 514 281 93 46 chr12 26031529 26031809 -95225721 + MLT1B LTR MaLR 86 378 -12 6 783 1263 185 44 249 chr12 26032034 26032508 -95225022 - ORR1C2 LTR MaLR 0 384 8 6 783 702 198 0 38 chr12 26032516 26032647 -95224883 + RSINE1 SINE B4 5 130 -35 6 783 189 0 0 0 chr12 26033089 26033110 -95224420 + (ATTG)n Simple_repeat Simple_repeat 1 21 0 6 783 550 302 145 13 chr12 26033137 26033365 -95224165 - MT2A LTR ERVL -8 525 268 6 783 2234 147 108 0 chr12 26033848 26034228 -95223302 + MTC LTR MaLR 1 421 0 6 783 182 77 0 0 chr12 26034906 26034932 -95222598 + MIR SINE MIR 112 137 -125 6 783 516 255 156 66 chr12 26037077 26037442 -95220088 - RMER10A LTR ERVL -27 415 18 6 783 197 315 98 0 chr12 26037892 26037984 -95219546 + MIR SINE MIR 70 170 -92 6 783 557 81 0 0 chr12 26038896 26038982 -95218548 + L1_Mus3 LINE L1 6553 6638 0 7 783 453 141 0 0 chr12 26039065 26039164 -95218366 + (TC)n Simple_repeat Simple_repeat 2 100 0 7 783 837 264 96 22 chr12 26039179 26039450 -95218080 - B4A SINE B4 0 292 2 7 783 280 294 58 32 chr12 26039620 26039743 -95217787 + MIR SINE MIR 22 154 -54 7 783 409 271 0 36 chr12 26039983 26040094 -95217436 - PB1D7 SINE Alu 0 120 14 7 783 251 372 79 37 chr12 26040331 26040503 -95217027 - MLT1D LTR MaLR -249 256 77 7 783 1371 224 101 11 chr12 26040503 26040851 -95216679 + MTEa LTR MaLR 1 379 0 7 783 208 133 67 0 chr12 26041337 26041382 -95216148 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 7 783 238 283 49 29 chr12 26042021 26042123 -95215407 + MER53 DNA hAT 80 183 -10 7 783 984 128 0 0 chr12 26042124 26042303 -95215227 + (TC)n Simple_repeat Simple_repeat 2 180 0 7 783 294 303 62 27 chr12 26042350 26042462 -95215068 - MLT1H1 LTR MaLR -438 117 2 8 783 3469 60 18 0 chr12 26042563 26043000 -95214530 - L1Md_F3 LINE L1 -14 6570 6126 8 783 2585 39 3 0 chr12 26043000 26043312 -95214218 + L1Md_F3 LINE L1 5840 6152 -432 8 783 210 309 59 40 chr12 26044667 26044768 -95212762 + L2c LINE L2 3234 3336 -51 8 783 597 314 13 0 chr12 26045485 26045638 -95211892 - MTE2b LTR MaLR -224 155 1 8 783 539 239 9 9 chr12 26045848 26045958 -95211572 + PB1D10 SINE Alu 2 111 -6 8 783 200 277 0 0 chr12 26046025 26046072 -95211458 + (CACCAT)n Simple_repeat Simple_repeat 5 51 0 8 783 198 192 0 0 chr12 26046098 26046150 -95211380 + (CAT)n Simple_repeat Simple_repeat 3 54 0 8 783 728 287 91 8 chr12 26047140 26047393 -95210137 + B4 SINE B4 3 276 -16 8 783 232 255 39 0 chr12 26049245 26049296 -95208234 - MIR SINE MIR -115 147 95 8 783 28 0 0 0 chr12 26050216 26050244 -95207286 + AT_rich Low_complexity Low_complexity 1 28 0 8 783 624 27 0 0 chr12 26050527 26050601 -95206929 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 9 783 3427 266 74 37 chr12 26050683 26051776 -95205754 - Lx8 LINE L1 -163 7310 6177 9 783 322 272 51 34 chr12 26051828 26051946 -95205584 - PB1 SINE Alu -7 120 1 9 783 809 259 111 147 chr12 26052065 26052418 -95205112 - MTEa LTR MaLR -7 372 33 9 783 374 68 34 0 chr12 26053426 26053479 -95204051 + (TCTCC)n Simple_repeat Simple_repeat 3 57 0 9 783 1059 142 0 0 chr12 26053479 26053655 -95203875 + (TTC)n Simple_repeat Simple_repeat 3 178 0 9 783 216 0 0 0 chr12 26054857 26054881 -95202649 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 9 783 844 190 12 6 chr12 26056504 26056668 -95200862 - ORR1C2 LTR MaLR 0 384 220 9 783 270 0 0 0 chr12 26056697 26056727 -95200803 + (TA)n Simple_repeat Simple_repeat 2 31 0 9 783 338 191 147 9 chr12 26056729 26056845 -95200685 + Lx9 LINE L1 7513 7644 0 9 783 772 167 120 31 chr12 26056863 26056912 -95200618 - ORR1C2 LTR MaLR -160 214 153 9 783 722 11 11 0 chr12 26056912 26056999 -95200531 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 783 772 167 120 31 chr12 26056999 26057107 -95200423 - ORR1C2 LTR MaLR -222 152 47 9 783 209 33 0 32 chr12 26057107 26057138 -95200392 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 783 772 167 120 31 chr12 26057138 26057171 -95200359 - ORR1C2 LTR MaLR -328 46 6 9 783 374 239 40 80 chr12 26057174 26057274 -95200256 + B4 SINE B4 40 135 -157 1 783 269 339 22 33 chr12 26057543 26057723 -95199807 - MT2A LTR ERVL -89 444 267 1 783 276 30 0 0 chr12 26057869 26057902 -95199628 + (TGG)n Simple_repeat Simple_repeat 2 34 0 1 783 222 150 0 0 chr12 26059653 26059693 -95197837 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 783 204 97 0 0 chr12 26061734 26061765 -95195765 + (T)n Simple_repeat Simple_repeat 1 31 0 1 783 423 68 0 0 chr12 26062253 26062312 -95195218 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 783 275 352 0 43 chr12 26062503 26062687 -95194843 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 1 783 345 321 83 85 chr12 26064212 26064587 -95192943 + MLT1A LTR MaLR 1 374 0 1 783 236 285 163 34 chr12 26064962 26065140 -95192390 - MIR SINE MIR -26 236 36 1 783 381 339 57 10 chr12 26067612 26067806 -95189724 - MIR SINE MIR -35 227 25 1 783 1326 78 0 0 chr12 26068538 26068718 -95188812 + (TTCA)n Simple_repeat Simple_repeat 1 180 0 1 783 233 260 20 0 chr12 26068764 26068814 -95188716 - PB1D10 SINE Alu -66 51 1 1 783 456 219 0 0 chr12 26069037 26069160 -95188370 + GA-rich Low_complexity Low_complexity 1 123 0 1 783 204 322 0 0 chr12 26070879 26070938 -95186592 - MIR SINE MIR -63 145 87 1 783 1271 206 254 15 chr12 26070981 26071244 -95186286 + RMER20B LTR ERVK 10 330 -297 1 783 294 29 0 0 chr12 26071244 26071279 -95186251 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 783 1271 232 71 31 chr12 26071279 26071531 -95185999 + RMER20B LTR ERVK 331 597 -30 1 783 239 264 0 19 chr12 26071540 26071594 -95185936 + RMER20B LTR ERVK 532 584 -43 1 783 1630 198 73 65 chr12 26071931 26072439 -95185091 + RLTR11A LTR ERVK 16 527 -1 1 783 190 361 24 0 chr12 26073070 26073153 -95184377 - MIRc SINE MIR -127 141 57 1 783 494 187 13 13 chr12 26073345 26073497 -95184033 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 783 1180 266 90 21 chr12 26075435 26075769 -95181761 + ORR1E LTR MaLR 1 357 -2 1 783 6800 175 30 8 chr12 26075897 26077559 -95179971 + Lx4B LINE L1 5241 7056 -2 1 783 618 14 0 0 chr12 26077867 26077938 -95179592 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 783 902 298 78 33 chr12 26078173 26078534 -95178996 - MTEa LTR MaLR -1 378 2 1 783 334 203 13 26 chr12 26079340 26079416 -95178114 + ORR1D1 LTR MaLR 9 83 -291 1 783 239 237 74 66 chr12 26079525 26079647 -95177883 + ORR1D1 LTR MaLR 250 372 -7 1 783 261 0 0 0 chr12 26079762 26079791 -95177739 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 783 440 258 0 21 chr12 26079806 26079894 -95177636 - B4 SINE B4 -14 278 193 1 783 592 90 90 0 chr12 26079894 26080005 -95177525 - RMER4B LTR ERVK 0 585 465 1 783 5313 92 9 12 chr12 26080014 26080751 -95176779 - Lx2 LINE L1 -1 6996 6262 1 783 463 291 124 16 chr12 26080791 26080976 -95176554 - B4 SINE B4 -86 206 2 1 783 463 244 144 16 chr12 26081134 26081259 -95176271 + RSINE1 SINE B4 25 165 0 1 783 1524 225 64 13 chr12 26081630 26082021 -95175509 + MTD LTR MaLR 7 417 -2 1 783 531 0 0 0 chr12 26082060 26082119 -95175411 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 783 207 0 0 0 chr12 26082122 26082145 -95175385 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 783 231 139 77 35 chr12 26082841 26082922 -95174608 - MTE2a LTR MaLR -6 353 270 1 783 322 295 0 0 chr12 26083013 26083091 -95174439 - ID4_ SINE ID -3 80 3 1 783 331 294 35 56 chr12 26083102 26083246 -95174284 - B1F1 SINE Alu -2 147 7 1 97 309 271 14 72 chr12 26083225 26083364 -95174166 - MLT1D LTR MaLR -365 140 10 1 784 486 0 0 0 chr12 26084472 26084526 -95173004 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 784 267 288 0 0 chr12 26084777 26084843 -95172687 + MLT2B2 LTR ERVL 28 93 -422 1 784 450 53 0 0 chr12 26087411 26087468 -95170062 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 784 657 14 0 0 chr12 26087552 26087625 -95169905 - L1Md_F2 LINE L1 -681 5901 5829 1 784 5243 52 15 19 chr12 26087625 26088293 -95169237 + L1Md_F2 LINE L1 5907 6571 -11 1 784 401 320 94 89 chr12 26088684 26088910 -95168620 - MLT1C LTR MaLR -82 385 163 1 784 847 282 232 45 chr12 26088910 26089359 -95168171 + MT2A LTR ERVL 1 533 0 1 784 401 320 94 89 chr12 26089359 26089482 -95168048 - MLT1C LTR MaLR -305 162 34 1 784 35 41 0 0 chr12 26089773 26089822 -95167708 + AT_rich Low_complexity Low_complexity 1 49 0 1 784 1431 51 10 15 chr12 26090681 26090879 -95166651 - L1_Mus3 LINE L1 -1 6637 6441 1 784 339 25 0 0 chr12 26090890 26090930 -95166600 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 784 1611 176 65 14 chr12 26090954 26091306 -95166224 - ORR1C2 LTR MaLR -14 370 1 1 784 340 293 0 0 chr12 26091426 26091508 -95166022 - ID4_ SINE ID 0 83 2 1 784 306 242 0 0 chr12 26091758 26091824 -95165706 + B4 SINE B4 9 74 -218 1 784 539 29 0 14 chr12 26091970 26092040 -95165490 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 784 315 0 0 0 chr12 26092106 26092141 -95165389 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 784 186 356 30 0 chr12 26092488 26092589 -95164941 - MIRb SINE MIR -129 139 36 1 784 194 0 39 0 chr12 26093402 26093428 -95164102 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 784 5004 113 40 8 chr12 26094089 26094831 -95162699 - Lx4A LINE L1 -52 7006 6241 1 784 306 157 12 24 chr12 26095357 26095442 -95162088 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 784 255 173 0 0 chr12 26095826 26095878 -95161652 + CT-rich Low_complexity Low_complexity 2 53 0 1 784 207 122 49 0 chr12 26096374 26096415 -95161115 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 784 2095 86 18 48 chr12 26096563 26096894 -95160636 + ORR1A3 LTR MaLR 6 326 0 1 784 192 40 0 0 chr12 26096917 26096942 -95160588 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 784 266 296 46 9 chr12 26096995 26097104 -95160426 - Lx8 LINE L1 -194 7279 7167 1 784 1201 251 92 37 chr12 26098026 26098253 -95159277 + MTD LTR MaLR 18 258 -161 1 784 1424 28 4 0 chr12 26098253 26098500 -95159030 + (TTTC)n Simple_repeat Simple_repeat 1 248 0 1 784 567 0 0 0 chr12 26098501 26098564 -95158966 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 1 784 991 0 0 16 chr12 26098565 26098686 -95158844 + (CTTTG)n Simple_repeat Simple_repeat 2 120 0 1 784 1201 251 92 37 chr12 26098686 26098834 -95158696 + MTD LTR MaLR 259 418 -1 1 784 525 32 0 0 chr12 26099475 26099538 -95157992 + (TCTCC)n Simple_repeat Simple_repeat 1 63 0 1 784 909 52 0 0 chr12 26101932 26102047 -95155483 + (TTCTC)n Simple_repeat Simple_repeat 1 115 0 1 784 597 28 0 0 chr12 26102047 26102118 -95155412 + (TTCCC)n Simple_repeat Simple_repeat 3 73 0 1 784 397 340 13 0 chr12 26103184 26103340 -95154190 + MLT1B LTR MaLR 7 164 -226 1 784 2352 171 42 2 chr12 26103766 26104171 -95153359 + MTC LTR MaLR 1 421 0 1 784 5332 169 68 27 chr12 26104171 26105374 -95152156 + MTC-int LTR MaLR 1 1253 -5 1 784 1108 152 35 15 chr12 26105379 26105580 -95151950 + MTC LTR MaLR 1 205 -216 1 784 669 13 0 0 chr12 26106181 26106259 -95151271 + (CTAAA)n Simple_repeat Simple_repeat 3 80 0 1 784 2359 238 50 19 chr12 26107017 26107532 -95149998 + Lx6 LINE L1 6794 7324 -136 1 784 8007 30 1 0 chr12 26107531 26108451 -95149079 - L1Md_T LINE L1 0 6582 5662 1 784 6678 12 0 0 chr12 26108447 26109190 -95148340 + L1Md_T LINE L1 4932 5674 -209 1 784 560 206 24 8 chr12 26109190 26109317 -95148213 + Lx7 LINE L1 7560 7688 -8 1 784 327 177 0 0 chr12 26109758 26109820 -95147710 + (CAT)n Simple_repeat Simple_repeat 2 63 0 1 784 1183 247 16 46 chr12 26109822 26110128 -95147402 - Lx8 LINE L1 -136 7337 7041 1 784 600 260 40 0 chr12 26110161 26110311 -95147219 + RSINE1 SINE B4 2 157 -8 1 784 333 118 0 0 chr12 26110332 26110383 -95147147 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 1 784 963 0 0 0 chr12 26110980 26111087 -95146443 + (TTTC)n Simple_repeat Simple_repeat 1 107 0 1 784 1272 67 0 0 chr12 26111088 26111268 -95146262 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 784 330 26 0 0 chr12 26111271 26111310 -95146220 + (TTCTCC)n Simple_repeat Simple_repeat 4 42 0 1 784 236 301 36 0 chr12 26111809 26111892 -95145638 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 1 784 1018 308 52 48 chr12 26111920 26112401 -95145129 - Lx9 LINE L1 -203 7441 6959 1 784 383 305 35 58 chr12 26112492 26112736 -95144794 - B4 SINE B4 -6 286 7 1 784 1215 229 19 11 chr12 26115076 26115337 -95142193 - ORR1B2 LTR MaLR -104 263 1 1 784 881 250 213 6 chr12 26115342 26115656 -95141874 + MTE2a LTR MaLR 1 379 0 1 784 1152 139 117 15 chr12 26116418 26116623 -95140907 + URR1A DNA MER1_type 1 226 0 1 784 1122 310 8 42 chr12 26116994 26117378 -95140152 + MTEa LTR MaLR 1 371 -8 1 784 544 320 41 26 chr12 26117391 26117657 -95139873 - MLT1C LTR MaLR -192 275 6 1 784 268 276 9 79 chr12 26117705 26117819 -95139711 + LTR85c LTR Gypsy? 687 792 -31 1 784 306 0 0 0 chr12 26119973 26120007 -95137523 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 784 459 0 0 0 chr12 26120007 26120057 -95137473 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 784 683 269 6 48 chr12 26120061 26120229 -95137301 - RSINE1 SINE B4 -2 163 3 1 784 385 289 20 100 chr12 26120239 26120254 -95137276 - ID_B1 SINE B4 -7 217 209 1 784 1785 140 197 31 chr12 26120254 26120614 -95136916 + MTC LTR MaLR 2 421 0 1 784 385 289 20 100 chr12 26120614 26120748 -95136782 - ID_B1 SINE B4 -16 208 80 1 784 432 0 0 0 chr12 26120824 26120872 -95136658 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 784 216 302 0 0 chr12 26121882 26121935 -95135595 - ID4_ SINE ID -26 57 5 1 784 240 200 38 0 chr12 26121988 26122068 -95135462 + CT-rich Low_complexity Low_complexity 2 84 0 1 784 468 284 0 56 chr12 26122074 26122216 -95135314 - B1F SINE Alu -14 135 2 1 784 404 281 24 35 chr12 26122251 26122366 -95135164 + PB1D10 SINE Alu 4 117 0 2 784 809 242 115 15 chr12 26122467 26122727 -95134803 + B4 SINE B4 3 288 -4 2 784 414 0 0 0 chr12 26122784 26122830 -95134700 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 784 322 0 0 0 chr12 26122918 26122956 -95134574 + HAL1-3A_ME LINE L1 1975 2012 -846 2 784 360 0 0 0 chr12 26123280 26123320 -95134210 + (T)n Simple_repeat Simple_repeat 1 40 0 2 784 1060 151 131 0 chr12 26124697 26124896 -95132634 + URR1A DNA MER1_type 2 226 0 2 784 267 31 0 0 chr12 26125066 26125098 -95132432 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 784 756 218 57 34 chr12 26125340 26125516 -95132014 - B3A SINE B2 -18 180 1 2 784 3473 187 81 75 chr12 26125664 26125779 -95131751 + RMER19B LTR ERVK 1 81 -821 2 784 4111 123 74 11 chr12 26125779 26126429 -95131101 - RLTR17 LTR ERVK -1 691 1 2 784 3473 187 81 75 chr12 26126429 26127197 -95130333 + RMER19B LTR ERVK 82 890 -12 2 784 401 286 8 23 chr12 26127224 26127353 -95130177 - L1MEg LINE L1 -4015 2069 1943 2 784 23 54 0 0 chr12 26127521 26127558 -95129972 + AT_rich Low_complexity Low_complexity 1 37 0 2 784 447 254 76 0 chr12 26127566 26127684 -95129846 - ID_B1 SINE B4 -9 215 89 2 784 237 33 0 0 chr12 26127686 26127716 -95129814 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 2 784 318 209 17 6 chr12 26128571 26128659 -95128871 + RLTR20B2 LTR ERVK 1 88 -475 2 784 374 277 45 0 chr12 26128915 26129027 -95128503 - PB1D10 SINE Alu 0 117 1 2 784 432 0 0 0 chr12 26129035 26129083 -95128447 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2 784 1539 175 145 18 chr12 26129572 26129904 -95127626 + ORR1D1 LTR MaLR 1 374 0 2 784 880 294 87 24 chr12 26129911 26130280 -95127250 + RMER5 LTR ERV1 77 468 -66 2 784 639 0 0 0 chr12 26130281 26130352 -95127178 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 784 261 0 0 0 chr12 26130352 26130380 -95127150 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 784 851 333 52 22 chr12 26130708 26131172 -95126358 + MER99 DNA hAT? 201 678 -153 2 784 507 262 123 18 chr12 26133643 26133914 -95123616 + MLT2D LTR ERVL 36 324 -73 2 784 501 62 0 0 chr12 26133923 26133988 -95123542 + (CTA)n Simple_repeat Simple_repeat 1 65 0 2 784 369 0 0 0 chr12 26134324 26134365 -95123165 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 784 431 264 116 18 chr12 26134373 26134510 -95123020 - L1MA8 LINE L1 -355 5936 5797 2 784 654 13 0 0 chr12 26134510 26134585 -95122945 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 784 495 0 0 0 chr12 26134585 26134639 -95122891 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 784 431 264 116 18 chr12 26134639 26134724 -95122806 - L1MA8 LINE L1 -495 5796 5692 2 784 397 285 101 50 chr12 26135713 26135931 -95121599 + MLT1B LTR MaLR 49 277 -113 2 784 508 276 104 13 chr12 26137785 26137939 -95119591 - B4A SINE B4 -119 173 6 2 784 1145 65 0 0 chr12 26139973 26140112 -95117418 + B1_Mm SINE Alu 1 139 -8 2 784 422 79 45 0 chr12 26140112 26140201 -95117329 + (CAA)n Simple_repeat Simple_repeat 2 94 0 2 784 391 332 80 36 chr12 26140876 26141213 -95116317 - ORR1E LTR MaLR 0 359 8 2 784 414 0 0 0 chr12 26141261 26141307 -95116223 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 784 830 306 30 60 chr12 26144902 26145201 -95112329 + B4A SINE B4 1 290 -2 2 784 796 313 71 8 chr12 26145396 26145789 -95111741 - L1MD LINE L1 -1213 4933 4516 2 784 1486 216 54 30 chr12 26145800 26146173 -95111357 - MTD LTR MaLR -17 402 21 2 784 242 29 0 28 chr12 26146177 26146213 -95111317 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 784 2558 267 75 31 chr12 26146297 26147380 -95110150 - L1MD LINE L1 -1630 4516 3387 2 784 405 281 146 48 chr12 26147447 26147501 -95110029 + ORR1E LTR MaLR 132 184 -175 2 784 792 101 0 0 chr12 26147501 26147639 -95109891 + (TC)n Simple_repeat Simple_repeat 1 138 0 2 784 378 0 0 0 chr12 26147639 26147680 -95109850 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 784 405 281 146 48 chr12 26147680 26147830 -95109700 + ORR1E LTR MaLR 185 356 -3 2 784 307 254 111 0 chr12 26147959 26148085 -95109445 - MTEb LTR MaLR -2 377 238 2 784 240 347 20 0 chr12 26148184 26148282 -95109248 - MTEb LTR MaLR -259 100 1 2 784 281 247 48 78 chr12 26148301 26148468 -95109062 - L1MD LINE L1 -2947 3199 3038 2 784 13126 61 3 2 chr12 26149705 26152068 -95105462 - L1Md_F2 LINE L1 0 6582 4218 2 784 216 0 0 0 chr12 26152174 26152198 -95105332 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 784 442 271 167 12 chr12 26153185 26153353 -95104177 + ID_B1 SINE B4 6 199 -25 2 784 306 297 30 0 chr12 26155634 26155735 -95101795 - MER58B DNA MER1_type -15 326 223 2 784 320 282 86 80 chr12 26157880 26158042 -95099488 - RSINE1 SINE B4 0 165 3 2 784 1357 252 85 13 chr12 26158070 26158448 -95099082 + MTD LTR MaLR 1 405 -14 2 784 303 208 14 0 chr12 26158567 26158639 -95098891 - MADE2 DNA Mariner -2 78 6 2 784 348 88 0 0 chr12 26158763 26158820 -95098710 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 784 557 302 70 6 chr12 26159513 26159735 -95097795 - MER57C2 LTR ERV1 -153 258 15 2 784 21 0 0 0 chr12 26160767 26160788 -95096742 + AT_rich Low_complexity Low_complexity 1 21 0 2 784 281 214 40 54 chr12 26161111 26161185 -95096345 - B4 SINE B4 -219 73 1 2 784 368 406 0 0 chr12 26161576 26161756 -95095774 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 784 270 225 0 0 chr12 26161759 26161839 -95095691 + GA-rich Low_complexity Low_complexity 1 80 0 2 784 220 136 23 0 chr12 26161898 26161942 -95095588 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2 784 320 248 23 83 chr12 26161952 26162084 -95095446 - B1_Mur4 SINE Alu 0 150 27 2 784 799 244 50 15 chr12 26161976 26162176 -95095354 - B4A SINE B4 -73 219 13 2 784 820 238 15 20 chr12 26162201 26162398 -95095132 - ID_B1 SINE B4 0 224 29 2 784 672 115 0 0 chr12 26162920 26163024 -95094506 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 2 784 504 0 0 0 chr12 26163130 26163186 -95094344 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 784 403 350 95 30 chr12 26163355 26163617 -95093913 + B4 SINE B4 5 283 -9 2 784 1304 68 9 4 chr12 26163758 26163978 -95093552 + (TCCA)n Simple_repeat Simple_repeat 1 221 0 2 784 286 323 32 0 chr12 26164000 26164093 -95093437 - PB1D10 SINE Alu -17 100 5 2 784 306 324 68 5 chr12 26164129 26164334 -95093196 + L1MA4A LINE L1 5715 5932 -371 2 784 21 89 0 0 chr12 26164618 26164674 -95092856 + AT_rich Low_complexity Low_complexity 1 56 0 2 784 573 15 0 0 chr12 26165500 26165566 -95091964 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2 784 231 312 12 0 chr12 26166451 26166531 -95090999 - RMER15 LTR ERVL -73 502 422 2 784 318 50 0 0 chr12 26166819 26166859 -95090671 + (TCC)n Simple_repeat Simple_repeat 3 42 0 2 784 1091 67 0 0 chr12 26166900 26167034 -95090496 - B1_Mus1 SINE Alu -10 138 5 2 784 485 283 58 33 chr12 26167081 26167322 -95090208 - L1MDa LINE L1 -5472 1161 915 2 784 247 333 121 17 chr12 26167631 26167805 -95089725 - L1MDa LINE L1 -6123 510 319 2 784 222 155 16 49 chr12 26168830 26168891 -95088639 + A-rich Low_complexity Low_complexity 3 61 0 2 784 1126 259 97 12 chr12 26169392 26169721 -95087809 + ORR1E LTR MaLR 3 359 0 2 784 378 274 165 50 chr12 26171207 26171468 -95086062 - B4A SINE B4 -1 291 1 2 784 205 392 40 8 chr12 26171588 26171714 -95085816 + L3 LINE CR1 3506 3635 -854 2 784 202 62 62 0 chr12 26172383 26172415 -95085115 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 784 667 284 12 0 chr12 26172491 26172653 -95084877 + RSINE1 SINE B4 2 165 0 2 784 311 293 101 30 chr12 26172845 26173014 -95084516 - B4 SINE B4 -110 182 2 2 784 23 33 0 0 chr12 26173054 26173084 -95084446 + AT_rich Low_complexity Low_complexity 1 30 0 2 784 336 261 68 0 chr12 26173090 26173178 -95084352 - PB1 SINE Alu -9 118 25 2 784 1122 213 50 138 chr12 26174345 26174754 -95082776 + ORR1C2 LTR MaLR 1 359 -15 2 784 384 271 90 58 chr12 26174971 26175159 -95082371 - ORR1E LTR MaLR -165 194 1 2 784 876 232 10 10 chr12 26175218 26175418 -95082112 + ID_B1 SINE B4 25 224 0 2 784 1305 83 0 0 chr12 26176055 26176235 -95081295 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 784 1143 62 7 0 chr12 26176267 26176413 -95081117 - B1_Mus2 SINE Alu 0 147 1 2 784 441 0 0 0 chr12 26176440 26176489 -95081041 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 784 690 217 72 0 chr12 26176490 26176628 -95080902 - B3A SINE B2 -50 148 1 2 784 195 42 0 0 chr12 26178663 26178687 -95078843 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 784 589 266 23 34 chr12 26178752 26178927 -95078603 - B4 SINE B4 -111 181 9 2 784 335 272 226 8 chr12 26178933 26179148 -95078382 - MER44A DNA MER2_type -6 333 77 2 784 1216 190 18 5 chr12 26179148 26179370 -95078160 - URR1B DNA MER1_type 0 225 1 2 784 335 330 94 22 chr12 26179370 26179448 -95078082 - MER44A DNA MER2_type -263 76 1 2 784 4911 182 72 27 chr12 26179466 26180490 -95077040 + Lx4A LINE L1 5978 7047 -11 2 784 195 42 0 0 chr12 26180490 26180514 -95077016 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 2 784 1512 217 22 111 chr12 26180989 26181440 -95076090 + MTD LTR MaLR 1 411 -8 2 784 240 35 0 0 chr12 26182283 26182312 -95075218 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 784 3980 55 30 0 chr12 26182489 26182995 -95074535 + L1Md_F3 LINE L1 6064 6584 0 2 784 315 228 15 49 chr12 26183005 26183208 -95074322 + RMER17D LTR ERVK 248 443 -446 2 784 353 291 71 0 chr12 26183189 26183316 -95074214 - B4A SINE B4 -156 136 1 2 784 1316 223 163 60 chr12 26183515 26184031 -95073499 - RMER4B LTR ERVK 0 585 17 2 784 23 0 0 0 chr12 26184478 26184501 -95073029 + AT_rich Low_complexity Low_complexity 1 23 0 2 784 261 0 0 0 chr12 26185129 26185158 -95072372 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 3 784 228 270 16 0 chr12 26185601 26185664 -95071866 + CT-rich Low_complexity Low_complexity 2 65 0 3 784 391 294 54 26 chr12 26186061 26186253 -95071277 + MLT1C LTR MaLR 3 198 -192 3 784 1339 168 158 17 chr12 26186259 26186556 -95070974 + Lx5 LINE L1 6712 7050 0 3 784 241 200 0 0 chr12 26186551 26186601 -95070929 - Lx7 LINE L1 -282 7414 7365 3 784 195 42 0 0 chr12 26186625 26186649 -95070881 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 3 784 594 0 0 0 chr12 26186660 26186726 -95070804 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 784 254 324 37 0 chr12 26186766 26186874 -95070656 + MLT1C LTR MaLR 240 351 -116 3 784 1003 112 168 0 chr12 26186874 26187035 -95070495 - Lx2 LINE L1 -435 6562 6375 3 784 2223 106 0 6 chr12 26187036 26187349 -95070181 + Lx2B LINE L1 6689 6999 -1 3 784 378 278 106 39 chr12 26188368 26188548 -95068982 - MIR SINE MIR -68 194 3 3 784 254 284 27 0 chr12 26188619 26188693 -95068837 + MIR SINE MIR 106 181 -81 3 784 298 216 0 33 chr12 26188729 26188820 -95068710 + CT-rich Low_complexity Low_complexity 3 90 0 3 784 287 349 40 30 chr12 26188831 26189029 -95068501 + MIR SINE MIR 7 206 -56 3 784 1877 120 3 62 chr12 26189524 26189862 -95067668 - ORR1A3 LTR MaLR -8 318 1 3 784 7382 158 77 128 chr12 26189862 26191931 -95065599 - ORR1A3-int LTR MaLR 0 1963 1 3 784 1402 138 60 50 chr12 26191935 26192295 -95065235 - ORR1A3 LTR MaLR -8 386 1 3 784 1192 215 30 76 chr12 26192674 26193041 -95064489 - ORR1E LTR MaLR -5 354 5 3 784 504 0 0 0 chr12 26193162 26193218 -95064312 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 784 304 284 45 0 chr12 26193566 26193697 -95063833 + MIRb SINE MIR 101 243 -25 3 784 1080 269 124 12 chr12 26194216 26194555 -95062975 + MTEa LTR MaLR 1 377 -2 3 784 521 274 12 19 chr12 26194670 26194830 -95062700 - B4 SINE B4 -132 160 2 3 784 1092 255 115 21 chr12 26194887 26195227 -95062303 - MTE2b LTR MaLR -2 377 6 3 784 2035 190 60 42 chr12 26195297 26195796 -95061734 - RLTR17 LTR ERVK -77 615 108 3 784 308 264 18 62 chr12 26196428 26196541 -95060989 + PB1D10 SINE Alu 2 109 -8 3 784 628 264 7 7 chr12 26198202 26198343 -95059187 + RSINE1 SINE B4 16 156 -9 3 784 441 0 0 0 chr12 26198349 26198398 -95059132 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 784 33 18 0 51 chr12 26198526 26198585 -95058945 + AT_rich Low_complexity Low_complexity 1 56 0 3 784 252 348 99 25 chr12 26198717 26198879 -95058651 - MIRb SINE MIR -59 209 36 3 784 477 105 0 0 chr12 26199029 26199115 -95058415 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 784 1189 146 10 14 chr12 26199367 26199576 -95057954 + MTC LTR MaLR 1 208 -213 3 784 279 0 0 0 chr12 26199662 26199693 -95057837 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 784 320 247 59 0 chr12 26200035 26200120 -95057410 + L1M2 LINE L1 2745 2834 -3309 3 784 1261 179 9 0 chr12 26200136 26200360 -95057170 + MTC LTR MaLR 196 421 0 3 784 905 268 28 81 chr12 26200553 26200911 -95056619 + MLT2D LTR ERVL 11 349 -65 3 784 190 373 0 0 chr12 26201082 26201157 -95056373 - L2c LINE L2 -70 3317 3243 3 784 896 228 184 0 chr12 26202309 26202621 -95054909 + MTEb LTR MaLR 2 370 -9 3 784 738 34 0 0 chr12 26203885 26203974 -95053556 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 3 784 19687 60 26 6 chr12 26203974 26206548 -95050982 - L1VL4 LINE L1 -10 3549 921 3 784 3470 40 0 0 chr12 26206548 26206944 -95050586 - MTA_Mm LTR MaLR 0 396 1 3 784 19687 92 54 8 chr12 26206944 26207115 -95050415 - L1VL4 LINE L1 -5382 920 719 3 784 234 0 0 0 chr12 26207115 26207141 -95050389 + (CAT)n Simple_repeat Simple_repeat 2 27 0 3 784 6008 116 76 10 chr12 26207141 26207817 -95049713 - L1VL4 LINE L1 -5584 718 7 3 784 1756 255 75 28 chr12 26207830 26208403 -95049127 + Lx8 LINE L1 6872 7471 -2 3 784 1610 43 0 0 chr12 26208708 26208896 -95048634 + B2_Mm1a SINE B2 3 190 -3 3 784 1436 229 110 3 chr12 26209361 26209724 -95047806 - MTD LTR MaLR 0 419 18 3 784 486 0 0 0 chr12 26210586 26210640 -95046890 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 784 432 0 0 0 chr12 26210640 26210687 -95046843 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 784 252 239 28 0 chr12 26211056 26211127 -95046403 + L3 LINE CR1 4416 4488 -1 3 784 355 209 0 0 chr12 26213937 26214004 -95043526 + B4 SINE B4 208 274 -18 3 784 235 314 0 0 chr12 26214016 26214086 -95043444 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 784 481 238 52 1 chr12 26214263 26214397 -95043133 - L1MB5 LINE L1 -30 6150 6012 3 785 300 27 0 0 chr12 26215218 26215255 -95042275 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 785 275 338 13 0 chr12 26216212 26216289 -95041241 - PB1D10 SINE Alu -39 78 1 3 785 223 304 125 23 chr12 26217296 26217424 -95040106 - MIRb SINE MIR -107 161 21 3 785 189 0 0 0 chr12 26217554 26217575 -95039955 + (A)n Simple_repeat Simple_repeat 1 21 0 3 785 597 28 0 0 chr12 26217753 26217824 -95039706 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 785 198 0 0 0 chr12 26217824 26217845 -95039685 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 785 602 269 184 12 chr12 26217856 26218101 -95039429 - B4A SINE B4 0 292 6 3 785 348 239 11 32 chr12 26221340 26221435 -95036095 + ORR1E LTR MaLR 35 127 -232 3 785 290 224 26 26 chr12 26221531 26221609 -95035921 + ORR1E LTR MaLR 302 379 0 3 785 735 211 14 27 chr12 26222583 26222729 -95034801 + B1F SINE Alu 5 148 -1 3 785 366 311 27 75 chr12 26223307 26223453 -95034077 - B1_Mur3 SINE Alu -8 141 3 3 785 234 0 0 0 chr12 26223720 26223746 -95033784 + (T)n Simple_repeat Simple_repeat 1 26 0 3 785 442 280 40 2 chr12 26223920 26224095 -95033435 + L1MB5 LINE L1 5711 5906 -1567 3 785 1877 282 98 26 chr12 26224515 26225277 -95032253 - Lx9 LINE L1 -247 7397 6581 3 785 234 0 0 0 chr12 26225397 26225423 -95032107 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 785 778 231 0 0 chr12 26225423 26225553 -95031977 - B1_Mur1 SINE Alu -19 130 1 3 785 26 50 0 0 chr12 26226034 26226074 -95031456 + AT_rich Low_complexity Low_complexity 1 40 0 3 785 309 337 145 17 chr12 26226131 26226303 -95031227 - MER20 DNA MER1_type 0 219 26 3 785 1877 180 80 17 chr12 26227237 26227964 -95029566 + L1_Mur2 LINE L1 892 1603 -4274 3 785 1160 280 42 12 chr12 26228098 26228431 -95029099 + RLTR28B LTR ERVL 1 343 -138 3 785 1073 66 0 0 chr12 26228443 26228580 -95028950 + B1_Mm SINE Alu 11 147 0 3 785 216 111 0 0 chr12 26228581 26228617 -95028913 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 785 312 274 36 136 chr12 26228620 26228730 -95028800 + RLTR28B LTR ERVL 383 481 0 3 785 231 364 73 0 chr12 26229567 26229677 -95027853 - MIR3 SINE MIR -32 176 59 3 785 2167 186 29 19 chr12 26230446 26230856 -95026674 - MTD LTR MaLR -5 414 1 3 785 377 232 0 0 chr12 26230936 26231005 -95026525 + B4A SINE B4 151 219 -73 3 785 243 0 0 0 chr12 26231006 26231033 -95026497 + (A)n Simple_repeat Simple_repeat 1 27 0 3 785 8503 10 0 0 chr12 26231033 26231973 -95025557 - L1Md_A LINE L1 -303 5580 4641 3 785 9237 21 0 0 chr12 26231975 26232971 -95024559 + L1Md_A LINE L1 5587 6582 0 3 785 305 299 0 0 chr12 26232971 26233038 -95024492 + B4A SINE B4 224 290 -2 3 785 423 0 0 0 chr12 26233069 26233116 -95024414 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 785 210 302 20 60 chr12 26233155 26233288 -95024242 + MIR SINE MIR 26 149 -119 3 785 449 191 0 43 chr12 26235368 26235461 -95022069 - PB1D10 SINE Alu -1 116 28 3 785 1043 191 22 30 chr12 26235576 26235808 -95021722 - Lx9 LINE L1 -118 7526 7297 3 785 724 318 34 89 chr12 26236118 26236498 -95021032 - ORR1E LTR MaLR 0 359 1 3 785 211 71 48 0 chr12 26238333 26238375 -95019155 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 785 264 178 60 30 chr12 26238461 26238594 -95018936 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 3 785 683 24 12 0 chr12 26240584 26240669 -95016861 + (TTCTC)n Simple_repeat Simple_repeat 2 87 0 3 785 651 26 0 0 chr12 26240669 26240745 -95016785 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 3 785 4632 202 26 14 chr12 26240978 26242137 -95015393 + L1_Mur3 LINE L1 888 2067 -3813 3 785 333 0 0 0 chr12 26242137 26242174 -95015356 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 785 297 0 0 0 chr12 26242174 26242206 -95015324 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 785 4632 189 24 13 chr12 26242206 26242352 -95015178 + L1_Mur3 LINE L1 2068 2206 -3674 3 785 4149 262 39 63 chr12 26242351 26243913 -95013617 + Lx5 LINE L1 5531 7046 -4 3 785 250 297 53 26 chr12 26249474 26249588 -95007942 + MER3 DNA MER1_type 19 135 -74 3 785 297 0 0 0 chr12 26250192 26250225 -95007305 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 785 2416 274 180 34 chr12 26250416 26251761 -95005769 - L1M3 LINE L1 -969 5171 3630 3 785 629 343 77 45 chr12 26251968 26252344 -95005186 - MLT1E1A LTR MaLR 0 680 293 3 785 366 293 0 0 chr12 26253119 26253194 -95004336 + ID2 SINE ID 2 76 -7 3 785 882 253 55 78 chr12 26253717 26254026 -95003504 + MLT1B LTR MaLR 61 362 -28 3 785 207 0 0 0 chr12 26254252 26254275 -95003255 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 3 785 238 307 0 13 chr12 26254358 26254434 -95003096 + MTEb LTR MaLR 278 352 -27 3 785 467 367 52 0 chr12 26256416 26256626 -95000904 + ID_B1 SINE B4 3 223 -1 3 785 206 218 45 22 chr12 26256643 26256732 -95000798 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 785 215 81 0 51 chr12 26257106 26257145 -95000385 + (CAA)n Simple_repeat Simple_repeat 2 38 0 3 785 518 257 11 29 chr12 26258819 26258976 -94998554 + B4A SINE B4 1 234 -58 3 785 468 51 0 0 chr12 26259022 26259081 -94998449 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 785 528 16 0 0 chr12 26259387 26259448 -94998082 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 785 23 33 0 0 chr12 26259889 26259919 -94997611 + AT_rich Low_complexity Low_complexity 1 30 0 3 785 250 403 51 29 chr12 26260970 26261108 -94996422 + MER45A DNA Tip100 4 144 -34 4 785 237 128 0 0 chr12 26261404 26261451 -94996079 + (T)n Simple_repeat Simple_repeat 1 47 0 4 785 336 244 55 6 chr12 26261705 26261870 -94995660 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 4 785 1509 219 84 12 chr12 26262637 26262723 -94994807 - ORR1D2 LTR MaLR -10 360 266 4 785 368 0 0 67 chr12 26262723 26262783 -94994747 + L1Md_F2 LINE L1 6527 6582 0 4 785 1509 219 84 12 chr12 26262783 26263028 -94994502 - ORR1D2 LTR MaLR -105 265 5 4 785 464 81 0 13 chr12 26263751 26263826 -94993704 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 785 1349 131 92 0 chr12 26265361 26265567 -94991963 - URR1B DNA MER1_type 0 225 1 4 785 469 317 68 25 chr12 26265646 26265711 -94991819 - L1MA9 LINE L1 -450 5862 5797 4 785 378 0 0 0 chr12 26265711 26265753 -94991777 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 785 469 317 68 25 chr12 26265753 26265923 -94991607 - L1MA9 LINE L1 -516 5796 5618 4 785 337 85 20 60 chr12 26267529 26267629 -94989901 + A-rich Low_complexity Low_complexity 2 97 0 4 785 1095 251 52 123 chr12 26268228 26268668 -94988862 + MTD LTR MaLR 11 419 0 4 785 413 233 0 11 chr12 26269860 26269951 -94987579 + L1M5 LINE L1 5524 5613 -511 4 785 776 241 25 0 chr12 26271157 26271230 -94986300 + ID SINE ID 5 81 -143 4 785 475 218 126 19 chr12 26271230 26271333 -94986197 + PB1D10 SINE Alu 1 114 -3 4 785 784 272 112 49 chr12 26271784 26272070 -94985460 - ORR1E LTR MaLR -19 340 37 4 785 333 336 92 18 chr12 26272136 26272363 -94985167 + L3 LINE CR1 3918 4161 -328 4 785 463 212 0 0 chr12 26273501 26273581 -94983949 + Lx8 LINE L1 7052 7131 -342 4 785 1213 59 0 0 chr12 26273587 26273740 -94983790 + L1Md_A LINE L1 6430 6582 0 4 785 245 368 11 0 chr12 26273839 26273934 -94983596 + RMER15 LTR ERVL 371 466 -109 4 785 345 298 81 47 chr12 26274122 26274270 -94983260 + HAL1-3A_ME LINE L1 2292 2444 -414 4 785 201 237 0 0 chr12 26274270 26274329 -94983201 + GA-rich Low_complexity Low_complexity 2 60 0 4 785 305 268 24 12 chr12 26274344 26274427 -94983103 + 4.5SRNA scRNA scRNA 5 88 -6 4 785 2457 138 46 55 chr12 26276681 26277158 -94980372 + IAPLTR2_Mm LTR ERVK 1 473 -2 4 785 4429 63 40 2 chr12 26277158 26277756 -94979774 + IAPEz-int LTR ERVK 3 662 -5819 4 785 454 66 0 32 chr12 26277756 26277819 -94979711 + IAPEz-int LTR ERVK 1359 1419 -5062 4 785 1852 115 4 4 chr12 26277808 26278070 -94979460 + IAPEz-int LTR ERVK 2236 2497 -5183 4 785 953 80 24 0 chr12 26278065 26278190 -94979340 + IAPEz-int LTR ERVK 4783 4910 -2770 4 785 5866 8 2 0 chr12 26278192 26278830 -94978700 + IAPEz-int LTR ERVK 4123 4761 -1720 4 785 6761 33 2 6 chr12 26278829 26279616 -94977914 + IAPEz-int LTR ERVK 5698 6481 0 4 785 2304 138 46 55 chr12 26279616 26280093 -94977437 + IAPLTR2_Mm LTR ERVK 1 473 -2 4 785 801 295 109 82 chr12 26280156 26280558 -94976972 - MTD LTR MaLR -31 388 7 4 785 504 0 0 0 chr12 26281604 26281660 -94975870 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 785 1656 147 84 6 chr12 26281798 26282119 -94975411 + ORR1B1 LTR MaLR 41 386 -8 4 785 189 147 0 0 chr12 26282139 26282173 -94975357 + (GGAAA)n Simple_repeat Simple_repeat 5 38 0 4 785 312 257 0 0 chr12 26282348 26282418 -94975112 + ID4 SINE ID 4 73 -10 4 785 269 265 35 113 chr12 26282799 26282914 -94974616 + PB1 SINE Alu 22 127 0 4 785 198 0 0 0 chr12 26283236 26283258 -94974272 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 785 612 222 162 45 chr12 26283733 26283931 -94973599 + ID_B1 SINE B4 2 222 -2 4 785 27 0 0 0 chr12 26283936 26283963 -94973567 + AT_rich Low_complexity Low_complexity 1 27 0 4 785 616 310 156 20 chr12 26284166 26284654 -94972876 + MER89 LTR ERV1 3 556 -3 4 785 615 247 121 34 chr12 26284939 26285237 -94972293 + Arthur1 DNA Tip100 3571 3894 -53 4 785 538 245 86 48 chr12 26285910 26286178 -94971352 - MTD LTR MaLR -5 374 18 4 785 950 322 36 22 chr12 26286341 26286703 -94970827 + MLT1A LTR MaLR 7 373 -1 4 785 342 0 0 0 chr12 26287586 26287624 -94969906 + (TAA)n Simple_repeat Simple_repeat 1 38 0 4 785 230 241 115 49 chr12 26289160 26289282 -94968248 + B4 SINE B4 163 292 0 4 785 438 20 0 0 chr12 26289304 26289355 -94968175 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 785 913 108 0 12 chr12 26289355 26289515 -94968015 + (GAA)n Simple_repeat Simple_repeat 3 160 0 4 785 202 116 23 23 chr12 26289522 26289566 -94967964 + GA-rich Low_complexity Low_complexity 2 45 0 4 785 216 154 0 49 chr12 26293039 26293080 -94964450 + polypyrimidine Low_complexity Low_complexity 3 41 0 4 785 483 48 0 0 chr12 26293294 26293356 -94964174 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 785 480 274 134 20 chr12 26293450 26293651 -94963879 + Lx8 LINE L1 7245 7468 -5 4 785 475 235 120 8 chr12 26294525 26294658 -94962872 - Lx8 LINE L1 -81 7392 7245 4 785 359 256 63 16 chr12 26294757 26294884 -94962646 + Lx5 LINE L1 6918 7050 0 4 785 554 236 70 106 chr12 26295015 26295169 -94962361 + ORR1E LTR MaLR 1 146 -213 4 785 1152 264 61 39 chr12 26295169 26295531 -94961999 + ORR1D2 LTR MaLR 1 370 0 4 785 554 266 41 74 chr12 26295531 26295767 -94961763 + ORR1E LTR MaLR 136 379 0 4 785 1513 289 73 102 chr12 26295891 26296599 -94960931 - Lx5 LINE L1 -412 6638 5951 4 785 1585 156 86 0 chr12 26296601 26296902 -94960628 - IAPEY3_LTR LTR ERVK -5 327 1 4 785 3643 144 19 11 chr12 26296903 26297657 -94959873 - Lx5 LINE L1 -1094 5956 5195 4 785 307 301 77 5 chr12 26298029 26298223 -94959307 - L1M5 LINE L1 -2156 3990 3783 4 785 245 295 19 95 chr12 26299370 26299475 -94958055 - B4A SINE B4 -193 99 3 4 785 641 348 46 25 chr12 26300665 26300948 -94956582 + B4A SINE B4 1 289 -3 4 785 347 312 23 23 chr12 26301305 26301436 -94956094 + RMER15 LTR ERVL 1 131 -444 4 785 797 289 51 11 chr12 26301473 26301715 -94955815 + RMER15 LTR ERVL 292 534 -41 4 785 270 73 0 0 chr12 26301715 26301756 -94955774 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 785 797 289 51 11 chr12 26301756 26301786 -94955744 + RMER15 LTR ERVL 535 575 0 4 785 233 312 26 16 chr12 26301792 26301912 -94955618 + CT-rich Low_complexity Low_complexity 1 121 0 4 785 395 241 0 6 chr12 26302209 26302372 -94955158 + (CA)n Simple_repeat Simple_repeat 1 162 0 4 785 425 276 20 0 chr12 26303350 26303448 -94954082 - B4 SINE B4 -192 100 1 4 785 385 263 61 9 chr12 26303459 26303574 -94953956 - MLT1A LTR MaLR -253 121 1 4 785 203 0 0 36 chr12 26304572 26304600 -94952930 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 785 25 0 0 0 chr12 26304667 26304692 -94952838 + AT_rich Low_complexity Low_complexity 1 25 0 4 785 642 60 0 0 chr12 26304802 26304885 -94952645 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 4 785 475 132 16 16 chr12 26304976 26305099 -94952431 + (TCTCTG)n Simple_repeat Simple_repeat 4 126 0 4 785 807 335 69 8 chr12 26305101 26305462 -94952068 - Lx8 LINE L1 -247 7226 6844 4 785 290 331 6 30 chr12 26305747 26305915 -94951615 + (TATATG)n Simple_repeat Simple_repeat 3 166 0 4 785 349 269 38 19 chr12 26306469 26306575 -94950955 + B3A SINE B2 75 182 -16 4 785 246 128 0 0 chr12 26306577 26306616 -94950914 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 785 877 232 123 8 chr12 26307418 26307670 -94949860 + B4A SINE B4 2 282 -10 4 785 474 33 0 0 chr12 26308826 26308886 -94948644 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 785 483 332 62 42 chr12 26309837 26310145 -94947385 - ORR1E LTR MaLR -36 323 10 4 785 1722 314 105 42 chr12 26310156 26311119 -94946411 - MTE-int LTR MaLR -542 1038 15 4 785 540 0 0 0 chr12 26311609 26311669 -94945861 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 785 468 0 0 0 chr12 26312052 26312104 -94945426 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 785 677 271 43 69 chr12 26312876 26313153 -94944377 - B4A SINE B4 -21 271 2 4 785 949 246 14 14 chr12 26314711 26314934 -94942596 + ID_B1 SINE B4 1 223 -1 4 785 1240 97 25 25 chr12 26315194 26315395 -94942135 - L1_Mus4 LINE L1 0 6636 6436 4 785 1599 109 47 0 chr12 26315547 26315804 -94941726 + ORR1A2 LTR MaLR 1 269 -58 4 785 444 37 0 0 chr12 26317749 26317803 -94939727 + (TATG)n Simple_repeat Simple_repeat 3 56 0 4 785 377 289 70 96 chr12 26317834 26318122 -94939408 + MLT1C LTR MaLR 99 449 -18 4 785 282 247 0 25 chr12 26318521 26318600 -94938930 - MIRc SINE MIR -109 159 83 4 785 335 236 17 21 chr12 26319095 26319588 -94937942 + GA-rich Low_complexity Low_complexity 1 490 0 4 785 23 54 0 0 chr12 26320122 26320159 -94937371 + AT_rich Low_complexity Low_complexity 1 37 0 4 785 14009 82 16 14 chr12 26320317 26320815 -94936715 - L1VL2 LINE L1 -626 2989 2486 4 785 3585 13 2 0 chr12 26320815 26321210 -94936320 + MTA_Mm LTR MaLR 1 396 0 4 785 9729 19 0 3 chr12 26321210 26322311 -94935219 + MTA_Mm-int LTR MaLR 1 1098 0 4 785 3377 13 39 0 chr12 26322311 26322692 -94934838 + MTA_Mm LTR MaLR 1 396 0 4 785 14009 81 12 10 chr12 26322692 26324714 -94932816 - L1VL2 LINE L1 -1130 2485 460 4 785 414 256 0 11 chr12 26324715 26324806 -94932724 - MTD LTR MaLR -329 90 1 4 785 709 260 104 63 chr12 26325328 26325714 -94931816 - MTE2a LTR MaLR -14 405 3 4 785 269 56 28 0 chr12 26325895 26325931 -94931599 + L1VL2 LINE L1 152 188 -6147 4 785 881 105 0 57 chr12 26325929 26326070 -94931460 + L1VL2 LINE L1 312 444 -5891 4 785 1185 214 4 16 chr12 26326070 26326326 -94931204 + MTC LTR MaLR 112 364 -57 4 785 496 287 60 110 chr12 26326366 26326648 -94930882 - L1M2 LINE L1 -1272 4871 4604 4 785 25 31 0 0 chr12 26326648 26326680 -94930850 + AT_rich Low_complexity Low_complexity 1 32 0 4 785 390 21 0 0 chr12 26326684 26326731 -94930799 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 785 482 221 14 1 chr12 26326772 26326886 -94930644 - B4A SINE B4 -4 288 171 4 785 738 178 96 0 chr12 26326887 26327033 -94930497 + URR1B DNA MER1_type 2 161 -64 4 785 1519 176 46 46 chr12 26327033 26327309 -94930221 + RMER17C LTR ERVK 1 265 -145 4 785 2738 70 19 0 chr12 26327309 26327680 -94929850 - L1_Mus3 LINE L1 -2 6636 6259 4 785 1519 176 46 46 chr12 26327680 26327813 -94929717 + RMER17C LTR ERVK 266 409 -1 4 785 460 88 0 0 chr12 26327813 26327881 -94929649 + URR1B DNA MER1_type 157 224 -1 4 785 570 300 21 0 chr12 26327881 26328058 -94929472 - B4 SINE B4 -107 185 2 4 785 364 250 144 99 chr12 26328207 26328338 -94929192 - L1M2 LINE L1 -1532 4611 4452 4 785 441 0 0 0 chr12 26328338 26328387 -94929143 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 785 364 250 144 99 chr12 26328387 26328610 -94928920 - L1M2 LINE L1 -1692 4451 4243 4 785 189 316 12 12 chr12 26328670 26328750 -94928780 + MIRm SINE MIR 93 172 -104 4 785 453 309 24 0 chr12 26329676 26329802 -94927728 + RSINE1 SINE B4 21 149 -16 4 785 206 79 26 26 chr12 26329840 26329879 -94927651 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 5 785 667 59 20 0 chr12 26330611 26330712 -94926818 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 785 266 224 12 0 chr12 26331011 26331096 -94926434 + (TCCA)n Simple_repeat Simple_repeat 4 89 0 5 785 234 0 0 0 chr12 26331989 26332015 -94925515 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 785 429 272 56 62 chr12 26332718 26332741 -94924789 - B3A SINE B2 0 198 182 5 785 540 56 0 0 chr12 26332741 26332813 -94924717 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 785 429 272 56 62 chr12 26332813 26332950 -94924580 - B3A SINE B2 -17 181 39 5 785 834 294 97 8 chr12 26333749 26334016 -94923514 + B4A SINE B4 2 292 0 5 785 207 265 19 38 chr12 26334045 26334151 -94923379 + (CATA)n Simple_repeat Simple_repeat 4 107 0 5 785 300 53 0 0 chr12 26334157 26334195 -94923335 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 785 256 291 23 76 chr12 26334655 26334826 -94922704 + RMER15 LTR ERVL 1 162 -413 5 785 621 341 9 9 chr12 26334875 26335103 -94922427 + RMER15 LTR ERVL 300 527 -48 5 785 227 161 18 0 chr12 26337044 26337100 -94920430 + CT-rich Low_complexity Low_complexity 2 58 0 5 785 506 313 50 100 chr12 26337231 26337452 -94920078 + MTD LTR MaLR 5 224 -195 5 785 2199 154 113 5 chr12 26337452 26337831 -94919699 + MTC LTR MaLR 2 421 0 5 785 506 313 50 100 chr12 26337831 26337889 -94919641 + MTD LTR MaLR 225 270 -149 5 785 541 178 8 61 chr12 26337944 26338076 -94919454 + MTD LTR MaLR 283 407 -12 5 785 342 296 92 32 chr12 26338210 26338461 -94919069 + LTR37B LTR ERV1 193 458 -10 5 785 450 0 0 0 chr12 26338698 26338748 -94918782 + (TTA)n Simple_repeat Simple_repeat 1 50 0 5 785 365 326 57 42 chr12 26340381 26340510 -94917020 + Lx9 LINE L1 7285 7416 -228 5 785 552 42 0 0 chr12 26340510 26340581 -94916949 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 785 365 326 57 42 chr12 26340581 26340787 -94916743 + Lx9 LINE L1 7417 7625 -19 5 785 884 241 53 0 chr12 26340936 26341123 -94916407 + B3 SINE B2 1 197 -19 5 785 21 36 0 0 chr12 26341326 26341354 -94916176 + AT_rich Low_complexity Low_complexity 1 28 0 5 785 1093 244 24 57 chr12 26341678 26341796 -94915734 + MTE2b LTR MaLR 1 115 -264 5 785 2629 161 143 4 chr12 26341796 26342301 -94915229 - RMER15 LTR ERVL 0 575 1 5 785 1093 244 24 57 chr12 26342301 26342517 -94915013 + MTE2b LTR MaLR 116 323 -56 5 785 1167 83 83 0 chr12 26343021 26343201 -94914329 + L1_Mus3 LINE L1 6444 6638 0 5 785 351 0 0 0 chr12 26343687 26343726 -94913804 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 785 215 222 19 0 chr12 26345306 26345360 -94912170 + (TATG)n Simple_repeat Simple_repeat 3 57 0 5 785 266 89 0 43 chr12 26345364 26345411 -94912119 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 5 786 843 115 0 0 chr12 26345918 26346048 -94911482 + (TC)n Simple_repeat Simple_repeat 1 130 0 5 786 461 206 112 0 chr12 26346054 26346161 -94911369 - RSINE1 SINE B4 -29 136 18 5 786 298 311 56 46 chr12 26347726 26347878 -94909652 + B4 SINE B4 78 280 -12 5 786 228 232 0 18 chr12 26348877 26348934 -94908596 + CT-rich Low_complexity Low_complexity 2 57 0 5 786 27 29 0 0 chr12 26348940 26348974 -94908556 + AT_rich Low_complexity Low_complexity 1 34 0 5 786 631 265 13 0 chr12 26348986 26349137 -94908393 - RSINE1 SINE B4 -3 162 10 5 786 201 195 0 0 chr12 26349201 26349242 -94908288 + CT-rich Low_complexity Low_complexity 1 41 0 5 786 185 154 0 25 chr12 26349253 26349293 -94908237 + CT-rich Low_complexity Low_complexity 2 40 0 5 786 1047 147 0 0 chr12 26349303 26349480 -94908050 + (TCC)n Simple_repeat Simple_repeat 3 179 0 5 786 321 150 0 48 chr12 26349495 26349579 -94907951 + CT-rich Low_complexity Low_complexity 3 82 0 5 786 333 62 0 0 chr12 26351246 26351294 -94906236 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 786 180 0 0 0 chr12 26352132 26352152 -94905378 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 5 786 297 305 158 7 chr12 26352210 26352362 -94905168 - MIR SINE MIR -22 240 66 5 786 820 251 66 5 chr12 26352467 26352716 -94904814 - ORR1D2 LTR MaLR 0 370 1 5 786 3542 20 2 0 chr12 26354227 26354622 -94902908 - MTA_Mm LTR MaLR 0 396 1 5 786 468 0 0 0 chr12 26357110 26357162 -94900368 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 786 599 254 77 6 chr12 26357162 26357344 -94900186 - ID_B1 SINE B4 -29 195 1 5 786 8650 29 6 1 chr12 26359062 26360422 -94897108 - L1Md_F3 LINE L1 0 6584 5219 5 786 258 282 97 61 chr12 26362585 26362769 -94894761 + MLT1A1 LTR MaLR 2 195 -213 5 786 907 86 7 7 chr12 26363133 26363273 -94894257 + (TCTA)n Simple_repeat Simple_repeat 2 141 0 5 786 687 207 8 0 chr12 26363273 26363394 -94894136 - B1_Mur2 SINE Alu -10 139 18 5 786 502 297 130 60 chr12 26363394 26363609 -94893921 - B4A SINE B4 -62 230 1 5 786 755 262 73 25 chr12 26364268 26364542 -94892988 + B4A SINE B4 6 292 0 5 786 327 49 0 0 chr12 26364543 26364584 -94892946 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 786 204 40 0 0 chr12 26364586 26364611 -94892919 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 786 1552 231 45 129 chr12 26365202 26365759 -94891771 - RLTR18B LTR ERVK -2 510 1 5 786 2681 172 16 2 chr12 26366386 26366887 -94890643 + RLTR28 LTR ERVL 3 510 -14 5 786 361 313 76 30 chr12 26367931 26368168 -94889362 + Tigger12c DNA MER2_type 313 560 -174 5 786 582 41 0 0 chr12 26368172 26368245 -94889285 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 786 837 156 198 16 chr12 26369100 26369282 -94888248 + B3 SINE B2 2 216 0 5 786 24 32 0 0 chr12 26370020 26370051 -94887479 + AT_rich Low_complexity Low_complexity 1 31 0 5 786 1241 271 47 11 chr12 26370538 26370903 -94886627 - MTE2b LTR MaLR 0 379 2 5 786 1138 144 114 0 chr12 26371030 26371231 -94886299 + URR1A DNA MER1_type 1 224 -2 5 786 450 0 0 0 chr12 26371400 26371450 -94886080 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 786 618 340 39 4 chr12 26371511 26371768 -94885762 - Lx8 LINE L1 -155 7318 7053 5 786 286 256 12 37 chr12 26372181 26372262 -94885268 + ID4_ SINE ID 2 80 -3 5 786 319 307 11 0 chr12 26372666 26372754 -94884776 + 5S rRNA rRNA 2 90 -31 5 786 245 308 0 0 chr12 26373014 26373079 -94884451 + B4A SINE B4 15 79 -213 5 786 469 316 6 65 chr12 26373135 26373304 -94884226 + B4A SINE B4 88 246 -46 5 786 259 248 284 6 chr12 26373321 26373480 -94884050 + B4A SINE B4 88 291 -1 5 786 26 0 0 0 chr12 26374319 26374345 -94883185 + AT_rich Low_complexity Low_complexity 1 26 0 5 786 186 370 24 12 chr12 26376057 26376139 -94881391 - L2b LINE L2 -41 3334 3252 5 786 736 299 35 46 chr12 26376588 26376935 -94880595 - MTE-int LTR MaLR -30 1550 1208 5 786 293 214 107 48 chr12 26376915 26377018 -94880512 + ORR1D2 LTR MaLR 262 370 0 5 786 3574 217 91 33 chr12 26377023 26378001 -94879529 + ORR1D2-int LTR MaLR 11 1045 -325 5 786 251 119 0 0 chr12 26377994 26378036 -94879494 + ORR1D2 LTR MaLR 321 362 -8 5 786 790 283 18 14 chr12 26378039 26378261 -94879269 - MTE-int LTR MaLR -460 1120 898 5 786 1172 106 6 0 chr12 26379500 26379679 -94877851 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 786 285 98 0 0 chr12 26379679 26379720 -94877810 + (TCTCCC)n Simple_repeat Simple_repeat 4 44 0 5 786 894 90 0 0 chr12 26380279 26380413 -94877117 + (CA)n Simple_repeat Simple_repeat 2 135 0 5 786 689 254 28 56 chr12 26381779 26381992 -94875538 - B3 SINE B2 -9 207 1 5 786 251 185 0 36 chr12 26383806 26383862 -94873668 - LTR33B LTR ERVL -18 485 432 5 786 698 277 48 14 chr12 26383887 26384096 -94873434 + B3 SINE B2 1 216 0 5 786 192 143 0 0 chr12 26384185 26384206 -94873324 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 786 366 23 0 0 chr12 26384206 26384249 -94873281 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 786 192 143 0 0 chr12 26384249 26384262 -94873268 + (TA)n Simple_repeat Simple_repeat 1 13 0 5 786 901 245 90 8 chr12 26384621 26384876 -94872654 - RMER20B LTR ERVK -17 610 335 5 786 408 200 0 0 chr12 26384889 26384974 -94872556 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 786 351 309 32 26 chr12 26384974 26385130 -94872400 + RLTR23 LTR ERV1 272 428 -2 5 786 585 312 0 19 chr12 26385228 26385385 -94872145 - RSINE1 SINE B4 0 165 12 5 786 592 247 118 92 chr12 26385430 26385787 -94871743 - ORR1D2 LTR MaLR 0 370 5 5 786 1517 244 20 3 chr12 26385944 26386301 -94871229 + ORR1D2 LTR MaLR 8 370 0 5 786 541 289 93 0 chr12 26386619 26386813 -94870717 - MTD LTR MaLR -12 407 196 5 786 597 64 0 0 chr12 26386819 26386897 -94870633 + (TTTTC)n Simple_repeat Simple_repeat 2 79 0 5 786 1069 57 50 0 chr12 26386897 26387037 -94870493 - B1_Mus1 SINE Alu 0 148 2 5 786 362 238 222 41 chr12 26387045 26387216 -94870314 - MTD LTR MaLR -218 203 2 5 786 564 141 0 0 chr12 26388688 26388809 -94868721 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 5 786 366 23 0 0 chr12 26389519 26389562 -94867968 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 786 3338 51 2 14 chr12 26389569 26389987 -94867543 + L1_Mus1 LINE L1 6154 6566 -1 5 786 241 79 0 0 chr12 26390020 26390058 -94867472 + MTD LTR MaLR 368 405 -14 5 786 216 0 0 0 chr12 26390127 26390151 -94867379 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 786 290 87 22 0 chr12 26390152 26390198 -94867332 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 5 786 362 329 47 26 chr12 26390557 26390791 -94866739 - L1M4 LINE L1 -6291 251 13 5 786 3729 176 41 10 chr12 26391461 26392150 -94865380 - RMER13A LTR ERVK -150 710 1 5 786 1616 146 12 80 chr12 26392952 26393288 -94864242 + ORR1A4 LTR MaLR 9 321 -8 5 786 840 62 23 8 chr12 26393841 26393970 -94863560 + L1Md_F3 LINE L1 6453 6583 -1 5 786 213 64 0 78 chr12 26394334 26394385 -94863145 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 5 786 474 301 40 14 chr12 26394509 26394657 -94862873 + B3A SINE B2 27 178 -38 5 786 261 57 0 0 chr12 26394696 26394731 -94862799 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 786 3044 66 28 24 chr12 26394763 26395185 -94862345 - L1Md_F2 LINE L1 -8 6574 6151 5 786 675 0 0 0 chr12 26395831 26395906 -94861624 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 786 236 330 28 28 chr12 26397069 26397178 -94860352 - PB1D7 SINE Alu -10 110 2 6 786 309 321 0 0 chr12 26397102 26397183 -94860347 - B4A SINE B4 -130 162 82 6 786 1685 52 0 0 chr12 26397192 26397402 -94860128 - L1_Mus2 LINE L1 0 6566 6357 6 786 469 43 52 91 chr12 26397402 26397479 -94860051 + L1_Mus2 LINE L1 6295 6368 -198 6 786 663 92 0 0 chr12 26397679 26397766 -94859764 - L1_Mur1 LINE L1 -263 5623 5537 6 786 239 328 105 18 chr12 26397949 26398331 -94859199 - L1M5 LINE L1 -3112 3034 2620 6 786 978 93 0 0 chr12 26398339 26398478 -94859052 + (GAAAA)n Simple_repeat Simple_repeat 3 141 0 6 786 871 280 29 57 chr12 26398924 26399273 -94858257 - MTEa LTR MaLR -38 341 3 6 786 361 322 40 7 chr12 26400351 26400501 -94857029 - RSINE1 SINE B4 0 165 11 6 786 320 353 80 76 chr12 26400866 26401316 -94856214 - MLT2F LTR ERVL -2 661 210 6 786 1020 251 186 6 chr12 26401790 26402143 -94855387 + MTD LTR MaLR 3 419 0 6 786 23 92 0 0 chr12 26402679 26402744 -94854786 + AT_rich Low_complexity Low_complexity 1 65 0 6 786 552 170 10 0 chr12 26403205 26403305 -94854225 + B1_Mur4 SINE Alu 20 120 -30 6 786 245 281 21 10 chr12 26404185 26404282 -94853248 + (CATA)n Simple_repeat Simple_repeat 2 99 0 6 786 358 309 7 0 chr12 26404271 26404471 -94853059 + (TCCA)n Simple_repeat Simple_repeat 1 201 0 6 786 182 250 53 0 chr12 26404542 26404618 -94852912 + L2 LINE L2 1695 1774 -1645 6 786 390 276 0 0 chr12 26404900 26404987 -94852543 - B3A SINE B2 -110 88 2 6 786 681 53 0 0 chr12 26405250 26405344 -94852186 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 786 572 238 7 52 chr12 26405838 26405993 -94851537 - B1F2 SINE Alu -1 148 1 6 786 477 0 0 0 chr12 26406600 26406653 -94850877 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 786 234 0 0 0 chr12 26406653 26406678 -94850852 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 786 300 301 65 83 chr12 26406725 26406942 -94850588 - B4 SINE B4 -63 229 17 6 786 210 37 0 0 chr12 26407876 26407903 -94849627 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 786 506 271 131 30 chr12 26408527 26408725 -94848805 - ID_B1 SINE B4 -4 220 3 6 786 391 210 12 0 chr12 26410073 26410154 -94847376 - MTC LTR MaLR -339 82 1 6 786 296 224 30 0 chr12 26410419 26410486 -94847044 + MTC LTR MaLR 11 79 -342 6 786 522 0 0 0 chr12 26411356 26411414 -94846116 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 786 432 0 0 0 chr12 26411414 26411461 -94846069 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 786 630 111 44 55 chr12 26411914 26412096 -94845434 + CT-rich Low_complexity Low_complexity 1 180 0 6 786 236 315 119 17 chr12 26412098 26412460 -94845070 - L1MEg LINE L1 -1560 4586 4188 6 786 189 121 0 0 chr12 26413176 26413209 -94844321 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6 786 302 253 170 95 chr12 26413371 26413825 -94843705 - L1MEg LINE L1 -4922 1320 833 6 786 783 104 0 0 chr12 26414283 26414398 -94843132 + (GGA)n Simple_repeat Simple_repeat 3 117 0 6 786 266 290 37 9 chr12 26415213 26415321 -94842209 + MLT1E LTR MaLR 101 211 -443 6 786 360 330 93 5 chr12 26415389 26415593 -94841937 + MLT1E LTR MaLR 432 653 0 6 786 651 313 25 74 chr12 26416313 26416596 -94840934 - B4 SINE B4 -23 269 1 6 786 258 343 23 11 chr12 26416772 26416946 -94840584 + CT-rich Low_complexity Low_complexity 1 176 0 6 786 1259 262 42 17 chr12 26419240 26419565 -94837965 - MTEa LTR MaLR -1 378 45 6 786 943 177 130 10 chr12 26419565 26419765 -94837765 - URR1B DNA MER1_type 0 225 2 6 786 1259 262 42 17 chr12 26419765 26419796 -94837734 - MTEa LTR MaLR -335 44 14 6 786 181 353 90 33 chr12 26420137 26420348 -94837182 - L2 LINE L2 -521 2898 2676 6 786 742 39 20 0 chr12 26420440 26420542 -94836988 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 6 786 285 264 0 0 chr12 26420583 26420704 -94836826 + (CTCA)n Simple_repeat Simple_repeat 3 123 0 6 786 231 61 39 39 chr12 26420914 26420965 -94836565 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 786 1120 265 81 35 chr12 26421946 26422294 -94835236 + Lx8 LINE L1 7072 7435 -38 6 786 1408 82 5 11 chr12 26422418 26422604 -94834926 + B2_Mm1a SINE B2 1 185 -8 6 786 492 279 0 0 chr12 26422634 26422745 -94834785 + RSINE1 SINE B4 38 148 -17 6 786 261 0 0 0 chr12 26422749 26422778 -94834752 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 786 531 0 0 0 chr12 26424186 26424245 -94833285 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 786 1270 185 93 65 chr12 26424400 26424724 -94832806 + ORR1D1 LTR MaLR 42 374 0 6 786 427 301 22 44 chr12 26424746 26424927 -94832603 - MLT2B4 LTR ERVL -366 190 14 6 786 243 81 81 0 chr12 26425761 26425798 -94831732 - Lx4A LINE L1 -829 6229 6190 6 786 241 327 53 13 chr12 26426076 26426228 -94831302 - MER5A DNA MER1_type -28 161 4 6 786 906 293 60 24 chr12 26426301 26426637 -94830893 - MLT1A0 LTR MaLR -13 352 5 6 786 392 331 7 36 chr12 26426922 26427060 -94830470 + RSINE1 SINE B4 27 160 -5 6 786 483 18 0 0 chr12 26427061 26427117 -94830413 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 786 495 45 0 0 chr12 26428112 26428178 -94829352 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 786 333 346 57 48 chr12 26428389 26428617 -94828913 - RMER2 LTR ERV1 -4 563 334 6 786 195 42 0 0 chr12 26428812 26428836 -94828694 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6 786 1007 29 0 49 chr12 26428840 26428983 -94828547 + L1Md_F3 LINE L1 6438 6573 -11 6 786 231 324 56 0 chr12 26429412 26429483 -94828047 - ID4_ SINE ID -6 77 3 6 786 546 312 62 40 chr12 26429614 26429841 -94827689 - Lx8 LINE L1 0 7473 7242 6 786 1574 173 111 0 chr12 26429874 26430198 -94827332 + ORR1B2 LTR MaLR 1 360 -7 6 786 1256 300 29 21 chr12 26430198 26430583 -94826947 - Lx8 LINE L1 -263 7210 6823 6 786 275 0 29 0 chr12 26430617 26430652 -94826878 + (TTG)n Simple_repeat Simple_repeat 2 37 0 6 786 1281 87 21 21 chr12 26431774 26431962 -94825568 + B2_Mm2 SINE B2 1 188 -7 6 786 38714 15 1 7 chr12 26431968 26437335 -94820195 + L1Md_A LINE L1 254 5585 -298 6 786 8793 20 1 1 chr12 26437336 26438332 -94819198 + L1Md_A LINE L1 5587 6582 0 6 786 267 267 138 38 chr12 26438351 26438610 -94818920 - ORR1D1 LTR MaLR 0 379 88 6 786 684 273 126 24 chr12 26438933 26439221 -94818309 - L1M2 LINE L1 -835 5308 4993 6 786 180 0 0 0 chr12 26439221 26439241 -94818289 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 786 684 275 130 21 chr12 26439241 26439342 -94818188 - L1M2 LINE L1 -1151 4995 4882 6 786 1190 140 0 16 chr12 26439362 26439551 -94817979 + B2_Mm2 SINE B2 1 186 -9 6 786 378 0 0 0 chr12 26439597 26439639 -94817891 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 6 786 455 242 103 41 chr12 26439722 26439919 -94817611 + L1MA4 LINE L1 5699 5882 -418 6 786 1204 275 65 40 chr12 26440702 26440879 -94816651 + MTD LTR MaLR 5 179 -240 6 786 3040 45 0 0 chr12 26440879 26441233 -94816297 + IAPEY2_LTR LTR ERVK 1 354 -3 6 786 1204 275 65 40 chr12 26441233 26441456 -94816074 + MTD LTR MaLR 180 415 -4 6 786 319 268 27 0 chr12 26442458 26442570 -94814960 + (TG)n Simple_repeat Simple_repeat 1 115 0 6 786 284 286 0 0 chr12 26442699 26442755 -94814775 - ID4 SINE ID -11 72 17 6 786 284 80 35 53 chr12 26442984 26443054 -94814476 - Lx2A1 LINE L1 -602 6406 6338 6 786 3440 93 2 10 chr12 26443101 26443590 -94813940 - L1_Mus4 LINE L1 -1 6635 6151 6 786 3983 77 10 0 chr12 26443593 26444113 -94813417 + L1_Mus4 LINE L1 5642 6166 -470 6 786 4727 146 113 68 chr12 26444563 26445542 -94811988 - RLTR13D2 LTR ERVK 0 1023 1 6 786 210 248 22 15 chr12 26446331 26446466 -94811064 + (TATG)n Simple_repeat Simple_repeat 4 139 0 6 786 433 322 17 6 chr12 26446499 26446677 -94810853 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 786 312 358 6 17 chr12 26446778 26446957 -94810573 + (TATG)n Simple_repeat Simple_repeat 3 179 0 6 786 251 288 44 18 chr12 26446889 26447002 -94810528 + (TATATG)n Simple_repeat Simple_repeat 4 119 0 6 786 306 125 0 0 chr12 26447556 26447604 -94809926 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 786 1097 291 50 19 chr12 26448500 26448864 -94808666 - MTEa LTR MaLR -4 375 1 6 786 288 277 73 40 chr12 26451459 26451583 -94805947 + B1F SINE Alu 21 148 -1 6 786 988 168 81 9 chr12 26451903 26452113 -94805417 + URR1B DNA MER1_type 1 225 0 6 786 478 219 19 0 chr12 26452727 26452832 -94804698 + B3A SINE B2 1 107 -91 6 786 1013 78 0 7 chr12 26452876 26453030 -94804500 + (TC)n Simple_repeat Simple_repeat 2 154 0 6 786 561 30 0 0 chr12 26453030 26453096 -94804434 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 786 22 35 0 0 chr12 26453111 26453140 -94804390 + AT_rich Low_complexity Low_complexity 1 29 0 6 786 679 183 49 14 chr12 26453551 26453695 -94803835 + B1F1 SINE Alu 1 149 0 6 786 384 217 141 0 chr12 26453696 26453788 -94803742 + ID_B1 SINE B4 1 105 -119 6 786 230 159 90 60 chr12 26454293 26454360 -94803170 + MLT2F LTR ERVL 495 563 0 6 786 581 181 0 7 chr12 26455726 26455865 -94801665 + (TG)n Simple_repeat Simple_repeat 2 139 0 6 786 352 200 52 43 chr12 26457260 26457375 -94800155 - MLT1A0 LTR MaLR -189 176 61 6 786 35693 76 5 7 chr12 26457723 26463749 -94793781 - L1Md_F2 LINE L1 0 6582 569 6 786 244 264 83 0 chr12 26464788 26464860 -94792670 + ID4_ SINE ID 5 82 -1 6 786 1206 184 9 18 chr12 26465363 26465590 -94791940 - URR1B DNA MER1_type 0 225 1 6 786 227 279 138 33 chr12 26465775 26465927 -94791603 + LTR41B LTR ERVL 583 750 -8 6 786 624 27 0 0 chr12 26467556 26467630 -94789900 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 786 800 111 0 7 chr12 26467662 26467798 -94789732 + (CA)n Simple_repeat Simple_repeat 1 135 0 6 786 410 329 56 24 chr12 26468160 26468447 -94789083 + Helitron2Na_Mam RC Helitron? 6 301 -23 6 786 186 250 18 0 chr12 26469620 26469676 -94787854 + MIRm SINE MIR 113 169 -107 6 786 237 345 92 10 chr12 26470431 26470579 -94786951 + MIRc SINE MIR 96 257 -5 7 786 509 44 15 0 chr12 26471764 26471832 -94785698 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 786 387 0 0 0 chr12 26471956 26471999 -94785531 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 786 695 289 35 50 chr12 26472011 26472270 -94785260 - B4 SINE B4 -18 274 20 7 786 246 250 257 17 chr12 26472686 26472861 -94784669 - L1MA6 LINE L1 -25 6275 6059 7 786 992 180 93 0 chr12 26474723 26474917 -94782613 + B3 SINE B2 1 212 -4 7 786 496 275 145 17 chr12 26475051 26475395 -94782135 + L1M4 LINE L1 5302 5689 -2306 7 786 1225 216 152 11 chr12 26475445 26475806 -94781724 + MTD LTR MaLR 8 419 0 7 787 180 111 0 0 chr12 26476902 26476929 -94780601 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 7 787 192 304 196 0 chr12 26477561 26477663 -94779867 - MER5A DNA MER1_type -44 145 24 7 787 266 341 41 23 chr12 26480042 26480213 -94777317 - MER58A DNA MER1_type 0 224 51 7 787 342 0 0 0 chr12 26480844 26480882 -94776648 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 787 1002 225 94 20 chr12 26480946 26481200 -94776330 - B4 SINE B4 -18 274 2 7 787 22 0 0 0 chr12 26481618 26481640 -94775890 + AT_rich Low_complexity Low_complexity 1 22 0 7 787 351 145 0 0 chr12 26483254 26483323 -94774207 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 787 984 268 72 37 chr12 26483348 26483724 -94773806 - RMER5 LTR ERV1 -69 465 77 7 787 551 190 120 53 chr12 26483936 26484086 -94773444 + URR1A DNA MER1_type 3 162 -64 7 787 2394 158 118 9 chr12 26484089 26484493 -94773037 + RMER4B LTR ERVK 3 424 -161 7 787 3338 29 26 0 chr12 26484493 26484879 -94772651 + MTA_Mm LTR MaLR 1 396 0 7 787 2394 158 118 9 chr12 26484879 26484998 -94772532 + RMER4B LTR ERVK 425 582 -3 7 787 431 97 0 27 chr12 26484998 26485070 -94772460 + URR1A DNA MER1_type 155 224 -2 7 787 311 325 22 77 chr12 26485630 26485813 -94771717 + B4A SINE B4 3 175 -117 7 787 716 86 9 0 chr12 26485924 26486029 -94771501 + (TC)n Simple_repeat Simple_repeat 1 106 0 7 787 645 14 0 0 chr12 26486866 26486940 -94770590 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 787 437 334 129 31 chr12 26486974 26487518 -94770012 - HAL1 LINE L1 -408 2099 1503 7 787 851 366 74 31 chr12 26487983 26488617 -94768913 - MLT1H-int LTR MaLR -32 1377 717 7 787 380 350 153 17 chr12 26488758 26489223 -94768307 - MLT1H-int LTR MaLR -880 529 2 7 787 1438 175 157 0 chr12 26490263 26490595 -94766935 + ORR1C2 LTR MaLR 1 384 0 7 787 304 266 129 7 chr12 26491692 26491832 -94765698 - MER3 DNA MER1_type -5 204 48 7 787 599 179 0 7 chr12 26492206 26492352 -94765178 + (TG)n Simple_repeat Simple_repeat 1 145 0 7 787 21 36 0 0 chr12 26492484 26492512 -94765018 + AT_rich Low_complexity Low_complexity 1 28 0 7 787 1790 152 96 58 chr12 26493063 26493245 -94764285 + ORR1C1 LTR MaLR 1 163 -215 7 787 504 0 0 0 chr12 26493245 26493301 -94764229 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 787 1790 152 96 58 chr12 26493301 26493482 -94764048 + ORR1C1 LTR MaLR 164 378 0 7 787 590 296 0 59 chr12 26495389 26495558 -94761972 + B3A SINE B2 2 160 -38 7 787 200 109 20 80 chr12 26497328 26497378 -94760152 + T-rich Low_complexity Low_complexity 2 48 0 7 787 357 43 0 0 chr12 26497714 26497761 -94759769 + (T)n Simple_repeat Simple_repeat 1 47 0 7 787 2326 4 0 0 chr12 26497763 26498018 -94759512 - L1Md_A LINE L1 0 6582 6328 7 787 696 242 30 12 chr12 26498164 26498331 -94759199 - RMER20B LTR ERVK -448 179 10 7 787 234 317 78 47 chr12 26498612 26498804 -94758726 + MLT1H-int LTR MaLR 337 534 -875 7 787 459 292 42 46 chr12 26499273 26499510 -94758020 + MTEb LTR MaLR 142 377 -2 7 787 476 32 16 0 chr12 26499606 26499668 -94757862 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 7 787 729 258 78 7 chr12 26499727 26499996 -94757534 - L1M3 LINE L1 -883 5257 4970 7 787 547 213 10 1 chr12 26500000 26500115 -94757415 - L1M3 LINE L1 -1175 4965 4797 1 787 313 283 111 89 chr12 26500243 26500433 -94757097 - MLT2B3 LTR ERVL 0 562 369 2 787 621 284 59 30 chr12 26500503 26500739 -94756791 + B4A SINE B4 27 269 -23 3 787 576 303 121 19 chr12 26500791 26501006 -94756524 - MLT2B3 LTR ERVL -208 346 110 2 787 343 301 62 79 chr12 26501418 26501645 -94755885 - MER2 DNA MER2_type -31 314 92 4 787 237 151 0 0 chr12 26501752 26501805 -94755725 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 5 787 783 253 0 32 chr12 26501806 26501994 -94755536 - B3A SINE B2 -16 182 1 6 787 3663 82 27 23 chr12 26503172 26503694 -94753836 - Lx LINE L1 0 6654 6131 7 787 434 276 90 42 chr12 26504047 26504236 -94753294 + B3A SINE B2 1 198 0 8 787 833 29 10 0 chr12 26504317 26504421 -94753109 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 9 787 1866 147 100 43 chr12 26505763 26506132 -94751398 - ORR1B1 LTR MaLR -4 390 1 1 787 307 313 59 15 chr12 26506334 26506470 -94751060 + MER77 LTR ERVL 120 261 -346 1 787 212 167 28 0 chr12 26509813 26509849 -94747681 + ID SINE ID 18 54 -170 1 787 661 288 83 0 chr12 26510299 26510504 -94747026 + ID_B1 SINE B4 1 222 -2 1 787 186 209 0 0 chr12 26510510 26510553 -94746977 + GA-rich Low_complexity Low_complexity 3 45 0 1 787 288 77 0 0 chr12 26510546 26510585 -94746945 + (GGAGA)n Simple_repeat Simple_repeat 5 43 0 1 787 484 308 0 25 chr12 26510597 26510717 -94746813 - B1F1 SINE Alu -20 129 13 1 787 210 302 0 0 chr12 26510782 26510835 -94746695 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 787 25 0 0 0 chr12 26510950 26510975 -94746555 + AT_rich Low_complexity Low_complexity 1 25 0 1 787 529 219 58 0 chr12 26513026 26513163 -94744367 - MLT1B LTR MaLR -52 338 194 1 787 866 302 36 36 chr12 26513307 26513582 -94743948 - B4 SINE B4 -5 287 13 2 787 853 282 149 9 chr12 26516147 26516462 -94741068 - MTEa LTR MaLR -3 376 18 2 787 216 0 0 0 chr12 26517678 26517702 -94739828 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 787 829 228 20 15 chr12 26518803 26519003 -94738527 + ORR1E LTR MaLR 22 222 -137 2 787 189 0 0 0 chr12 26519164 26519185 -94738345 + (TTC)n Simple_repeat Simple_repeat 3 23 0 2 787 2014 139 149 5 chr12 26519802 26520170 -94737360 - MTC LTR MaLR 0 421 1 2 787 629 293 56 134 chr12 26521393 26521677 -94735853 + B4 SINE B4 11 272 -20 2 787 869 172 14 7 chr12 26522239 26522385 -94735145 + B1_Mus2 SINE Alu 1 147 0 2 787 220 237 34 0 chr12 26524273 26524332 -94733198 + CT-rich Low_complexity Low_complexity 2 62 0 2 787 264 247 76 151 chr12 26524333 26524505 -94733025 - RSINE1 SINE B4 -3 162 4 2 787 8744 64 0 5 chr12 26524926 26526039 -94731491 + L1Md_F2 LINE L1 4480 5586 -297 3 787 7911 55 11 2 chr12 26526039 26527014 -94730516 + L1Md_F2 LINE L1 5587 6570 -12 3 787 279 0 0 0 chr12 26527884 26527915 -94729615 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 787 716 298 34 5 chr12 26528563 26528772 -94728758 + ID_B1 SINE B4 1 215 -9 3 787 549 0 0 0 chr12 26530027 26530088 -94727442 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 787 403 322 40 13 chr12 26530958 26531109 -94726421 + LTR33A LTR ERVL 21 175 -345 3 787 829 271 124 6 chr12 26531116 26531431 -94726099 - ORR1E LTR MaLR -5 354 3 3 787 216 0 0 0 chr12 26531957 26531981 -94725549 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 787 1206 56 0 0 chr12 26532400 26532543 -94724987 + B1_Mm SINE Alu 2 144 -3 3 787 1243 218 114 32 chr12 26532814 26533156 -94724374 + ORR1D2 LTR MaLR 1 370 0 3 787 297 0 0 0 chr12 26533713 26533746 -94723784 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 787 477 0 0 0 chr12 26533746 26533798 -94723732 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 787 718 255 165 47 chr12 26534145 26534400 -94723130 - B4A SINE B4 0 292 8 4 787 495 0 0 0 chr12 26535199 26535254 -94722276 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 787 331 194 13 40 chr12 26535256 26535331 -94722199 - ID4_ SINE ID -9 74 2 4 787 489 275 24 1 chr12 26536329 26536458 -94721072 - B1F1 SINE Alu -18 129 1 4 787 257 393 49 14 chr12 26536458 26536488 -94721042 - B4 SINE B4 -200 92 58 4 787 357 274 141 0 chr12 26536519 26536654 -94720876 + MLT1B LTR MaLR 210 363 -27 4 787 388 316 0 36 chr12 26536922 26537051 -94720479 - MTEa LTR MaLR -99 280 157 4 787 321 382 11 23 chr12 26537060 26537234 -94720296 - MTEa LTR MaLR -196 183 12 4 787 1137 264 134 3 chr12 26537284 26537619 -94719911 + MTE2b LTR MaLR 1 379 0 4 787 280 271 26 32 chr12 26540187 26540343 -94717187 + (CA)n Simple_repeat Simple_repeat 2 156 0 4 787 209 33 0 32 chr12 26540383 26540414 -94717116 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 787 514 109 11 11 chr12 26540463 26540556 -94716974 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 787 254 246 14 14 chr12 26540590 26540660 -94716870 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 787 369 0 0 0 chr12 26541943 26541984 -94715546 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 787 3022 54 158 0 chr12 26542130 26542540 -94714990 + IAPLTR2_Mm LTR ERVK 1 475 0 5 787 242 317 67 0 chr12 26542891 26542995 -94714535 + L2a LINE L2 3316 3426 0 5 787 279 93 0 0 chr12 26543546 26543589 -94713941 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 787 357 115 0 33 chr12 26544226 26544316 -94713214 + (TTTTTG)n Simple_repeat Simple_repeat 4 90 0 5 787 2060 150 86 18 chr12 26544436 26544830 -94712700 - MTC LTR MaLR 0 421 1 5 787 231 288 0 24 chr12 26545775 26545857 -94711673 + GA-rich Low_complexity Low_complexity 3 82 0 5 787 198 0 0 0 chr12 26545864 26545886 -94711644 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 787 396 105 40 0 chr12 26546386 26546462 -94711068 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 5 787 5069 34 10 2 chr12 26546698 26547295 -94710235 - L1Md_T LINE L1 -2 6580 5979 5 787 374 248 93 72 chr12 26548335 26548524 -94709006 - B4 SINE B4 0 292 105 6 787 344 281 21 0 chr12 26548534 26548630 -94708900 - B1_Mur2 SINE Alu -40 109 12 6 787 21 36 0 0 chr12 26551492 26551520 -94706010 + AT_rich Low_complexity Low_complexity 1 28 0 6 787 752 249 6 23 chr12 26551868 26552045 -94705485 - B3A SINE B2 -24 174 1 6 787 2281 325 63 24 chr12 26552176 26553287 -94704243 - Lx8 LINE L1 -2 7471 6318 6 787 297 320 10 10 chr12 26553906 26554004 -94703526 + MER63D DNA AcHobo 10 107 -954 6 787 695 341 57 3 chr12 26554003 26554318 -94703212 + MER63D DNA AcHobo 266 597 -464 6 787 307 284 94 40 chr12 26554487 26554711 -94702819 + MER63D DNA AcHobo 821 1056 -5 6 787 1480 233 28 25 chr12 26558821 26559177 -94698353 - ORR1D2 LTR MaLR -11 359 3 6 787 465 286 122 0 chr12 26559670 26559859 -94697671 + B3 SINE B2 1 212 -4 6 787 210 37 0 0 chr12 26561628 26561655 -94695875 + (T)n Simple_repeat Simple_repeat 1 27 0 6 787 1417 292 40 47 chr12 26562853 26563382 -94694148 - MT2A LTR ERVL -8 525 1 6 787 411 145 0 0 chr12 26564270 26564339 -94693191 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 787 6059 45 0 1 chr12 26564583 26565300 -94692230 - L1_Mus1 LINE L1 -206 6361 5646 7 787 1468 57 10 35 chr12 26565300 26565524 -94692006 + L1_Mus1 LINE L1 6368 6567 0 7 787 1185 56 0 14 chr12 26565546 26565692 -94691838 + B1_Mm SINE Alu 3 146 -1 7 787 1143 233 92 35 chr12 26567179 26567526 -94690004 - ORR1D2 LTR MaLR -3 367 1 7 787 650 325 21 17 chr12 26567850 26568138 -94689392 - B4A SINE B4 -2 290 2 7 787 686 258 18 0 chr12 26570659 26570826 -94686704 + B4 SINE B4 105 274 -18 7 787 1004 307 72 80 chr12 26571513 26572112 -94685418 - MER77 LTR ERVL -12 595 2 7 787 365 318 69 57 chr12 26572194 26572441 -94685089 - B4A SINE B4 0 292 43 7 787 532 247 20 7 chr12 26572642 26572789 -94684741 + B1F SINE Alu 1 149 0 7 787 277 22 0 62 chr12 26572791 26572839 -94684691 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 7 787 784 189 0 14 chr12 26573600 26573745 -94683785 - B3A SINE B2 -55 143 1 8 787 2236 170 35 0 chr12 26574359 26574758 -94682772 - MTC LTR MaLR -8 413 1 8 787 411 21 0 0 chr12 26574852 26574900 -94682630 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 787 1094 41 14 0 chr12 26575049 26575195 -94682335 - B2_Mm2 SINE B2 -45 150 3 8 787 678 244 0 0 chr12 26575218 26575353 -94682177 + B3A SINE B2 34 168 -30 8 787 542 15 15 0 chr12 26575361 26575428 -94682102 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 787 411 113 0 0 chr12 26576525 26576587 -94680943 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 787 236 100 0 24 chr12 26576956 26576997 -94680533 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 8 787 352 353 29 0 chr12 26577892 26577989 -94679541 + RSINE1 SINE B4 4 103 -62 8 787 1989 178 12 43 chr12 26577989 26578201 -94679329 - MTB_Mm LTR MaLR -2 405 197 8 787 1845 171 119 3 chr12 26578201 26578554 -94678976 + ORR1B1 LTR MaLR 1 394 0 9 787 1989 178 12 43 chr12 26578554 26578759 -94678771 - MTB_Mm LTR MaLR -211 196 1 8 787 351 0 0 0 chr12 26580490 26580529 -94677001 + (TA)n Simple_repeat Simple_repeat 1 39 0 9 787 222 37 0 0 chr12 26581832 26581859 -94675671 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 787 306 0 0 0 chr12 26581859 26581892 -94675638 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 787 198 0 0 0 chr12 26581913 26581935 -94675595 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 787 295 319 0 0 chr12 26581947 26582038 -94675492 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 9 787 488 236 0 6 chr12 26582039 26582197 -94675333 + (TG)n Simple_repeat Simple_repeat 2 158 0 9 787 939 266 62 11 chr12 26582977 26583251 -94674279 - RMER15 LTR ERVL -16 559 272 9 787 314 323 67 15 chr12 26583639 26583774 -94673756 - L3 LINE CR1 -935 3554 3413 9 787 637 122 17 0 chr12 26583891 26584006 -94673524 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 9 787 1445 191 113 29 chr12 26584096 26584441 -94673089 - ORR1D1 LTR MaLR 0 374 1 1 787 327 272 146 0 chr12 26585080 26585183 -94672347 - L3 LINE CR1 -450 4039 3922 1 787 1055 61 0 8 chr12 26585939 26586072 -94671458 + B1_Mus1 SINE Alu 4 135 -13 1 787 8519 31 7 2 chr12 26586083 26587194 -94670336 - L1Md_F3 LINE L1 0 6584 5468 1 787 1238 35 0 0 chr12 26587192 26587337 -94670193 + L1_Mm LINE L1 4044 4188 -1695 1 787 214 310 180 0 chr12 26587416 26587516 -94670014 - L2a LINE L2 0 3426 3309 1 787 230 238 45 45 chr12 26587604 26587621 -94669909 + ORR1A3-int LTR MaLR 595 611 -1352 1 787 1363 254 93 58 chr12 26587621 26588139 -94669391 + MT2B LTR ERVL 1 536 -65 1 787 585 0 0 0 chr12 26588140 26588205 -94669325 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 787 282 148 0 0 chr12 26588205 26588259 -94669271 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 787 258 57 0 0 chr12 26588281 26588316 -94669214 + MT2_Mm LTR ERVL 459 493 0 1 787 218 385 16 0 chr12 26588413 26588535 -94668995 - L2a LINE L2 -511 2908 2785 1 787 243 125 0 0 chr12 26588569 26588609 -94668921 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 787 442 341 138 37 chr12 26589003 26589329 -94668201 + MLT1A0 LTR MaLR 7 365 0 1 787 828 0 0 0 chr12 26591520 26591612 -94665918 + (GA)n Simple_repeat Simple_repeat 2 93 0 1 787 221 204 61 0 chr12 26591999 26592048 -94665482 - PB1D9 SINE Alu -21 99 48 1 787 24 32 0 0 chr12 26592550 26592581 -94664949 + AT_rich Low_complexity Low_complexity 1 31 0 1 787 1466 271 187 72 chr12 26592583 26593449 -94664081 - Lx9 LINE L1 -7 7637 6672 1 787 502 277 301 25 chr12 26593561 26593715 -94663815 - Lx9 LINE L1 -1118 6526 6339 1 787 276 102 0 0 chr12 26593715 26593764 -94663766 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 1 787 502 277 301 25 chr12 26593764 26594138 -94663392 - Lx9 LINE L1 -1306 6338 5852 1 787 334 223 221 7 chr12 26594130 26594270 -94663260 - Lx9 LINE L1 -1078 4769 4600 1 787 947 287 10 7 chr12 26594273 26594582 -94662948 + L1_Mur3 LINE L1 4282 4591 -1289 1 787 398 258 138 25 chr12 26594646 26594805 -94662725 - B3A SINE B2 -21 177 1 1 787 8014 62 4 0 chr12 26595417 26596462 -94661068 - L1_Mus1 LINE L1 0 6567 5519 1 787 213 39 0 0 chr12 26596831 26596857 -94660673 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 787 909 248 19 0 chr12 26596860 26597070 -94660460 + B3 SINE B2 3 216 0 1 787 266 132 0 19 chr12 26597253 26597307 -94660223 + (TTG)n Simple_repeat Simple_repeat 1 53 0 1 787 229 217 0 0 chr12 26598221 26598267 -94659263 + (CATA)n Simple_repeat Simple_repeat 1 46 0 1 787 1272 260 39 11 chr12 26598347 26598705 -94658825 + MTEb LTR MaLR 4 371 -8 1 787 770 237 120 109 chr12 26599401 26599756 -94657774 - ORR1E LTR MaLR -1 378 1 1 787 1952 48 0 0 chr12 26600466 26600696 -94656834 - L1Md_F2 LINE L1 -766 5816 5587 1 787 5703 53 11 0 chr12 26600696 26601393 -94656137 + L1Md_F2 LINE L1 5866 6570 -12 1 787 255 270 118 20 chr12 26602572 26602674 -94654856 - Lx8 LINE L1 -9 7464 7353 1 787 280 59 0 38 chr12 26603261 26603314 -94654216 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 1 787 242 234 15 15 chr12 26603780 26603845 -94653685 + ORR1D1 LTR MaLR 308 372 -2 1 787 1019 321 69 13 chr12 26604018 26604482 -94653048 + RMER5 LTR ERV1 34 523 -11 1 787 967 246 90 46 chr12 26605835 26606180 -94651350 + RMER13A LTR ERVK 107 466 -394 1 788 182 83 0 53 chr12 26607729 26607767 -94649763 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 1 788 339 329 103 25 chr12 26614081 26614402 -94643128 - L1M5 LINE L1 -1962 4184 3839 1 788 355 264 103 0 chr12 26614542 26614629 -94642901 - B3A SINE B2 -102 96 1 1 788 6658 169 34 44 chr12 26614649 26615602 -94641928 - Lx5 LINE L1 -197 6853 5897 1 788 1475 60 55 0 chr12 26615602 26615785 -94641745 - B2_Mm2 SINE B2 -2 193 1 1 788 6658 153 5 7 chr12 26615785 26616344 -94641186 - Lx5 LINE L1 -1154 5896 5345 1 788 10093 142 16 6 chr12 26616351 26617290 -94640240 + L1_Mur2 LINE L1 3679 4623 -1254 1 788 239 0 0 31 chr12 26617290 26617322 -94640208 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 788 10093 142 16 6 chr12 26617322 26618028 -94639502 + L1_Mur2 LINE L1 4624 5340 -537 1 788 208 328 60 0 chr12 26619334 26619401 -94638129 + MER5B DNA MER1_type 50 120 -58 1 788 227 340 36 24 chr12 26619512 26619658 -94637872 - L2c LINE L2 -217 3170 3018 1 788 251 359 131 5 chr12 26619776 26619975 -94637555 + MER102c DNA MER1_type 3 226 -105 1 788 423 0 0 0 chr12 26620389 26620436 -94637094 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 788 257 0 30 0 chr12 26620436 26620468 -94637062 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 788 352 0 42 0 chr12 26620473 26620521 -94637009 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 788 318 157 0 0 chr12 26620553 26620636 -94636894 + (CAGAGA)n Simple_repeat Simple_repeat 4 86 0 1 788 263 344 59 7 chr12 26620726 26620878 -94636652 - MER5A DNA MER1_type -29 160 1 1 788 265 311 0 26 chr12 26621343 26621434 -94636096 + ID4 SINE ID 6 90 -62 1 788 690 75 0 0 chr12 26621495 26621588 -94635942 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 788 870 282 69 38 chr12 26622751 26623013 -94634517 + B4A SINE B4 3 272 -20 1 788 453 19 0 0 chr12 26623017 26623071 -94634459 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 788 252 0 0 0 chr12 26623545 26623573 -94633957 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 788 261 236 0 0 chr12 26627793 26627848 -94629682 + MTEa LTR MaLR 5 59 -320 1 788 404 19 19 0 chr12 26627849 26627902 -94629628 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 788 914 207 40 27 chr12 26627924 26628147 -94629383 + MTEa LTR MaLR 154 379 0 1 788 318 167 0 0 chr12 26628379 26628439 -94629091 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 788 468 0 0 0 chr12 26628485 26628537 -94628993 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1 788 214 226 38 0 chr12 26628889 26628942 -94628588 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 1 788 249 292 56 0 chr12 26629158 26629230 -94628300 + Lx8 LINE L1 7154 7229 -244 1 788 339 206 0 0 chr12 26629256 26629319 -94628211 + RMER15 LTR ERVL 408 470 -105 1 788 246 244 21 137 chr12 26629505 26629600 -94627930 + RSINE1 SINE B4 2 85 -80 1 788 688 253 42 36 chr12 26630443 26630636 -94626894 + B3A SINE B2 1 194 -4 1 788 432 0 0 0 chr12 26630772 26630820 -94626710 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 788 936 268 105 31 chr12 26630982 26631306 -94626224 - ORR1E LTR MaLR -6 353 6 1 788 307 324 65 37 chr12 26633759 26633974 -94623556 + L1MEf LINE L1 11 231 -6169 1 788 300 137 0 0 chr12 26634265 26634316 -94623214 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 788 324 299 53 41 chr12 26634598 26634769 -94622761 + L1MEf LINE L1 1120 1292 -5123 1 788 762 319 57 10 chr12 26634812 26635110 -94622420 + Lx8 LINE L1 6956 7267 -206 1 788 286 213 26 197 chr12 26635824 26635976 -94621554 + RMER15 LTR ERVL 1 126 -449 1 788 824 311 21 38 chr12 26636011 26636299 -94621231 + RMER15 LTR ERVL 275 557 -18 1 788 583 312 177 11 chr12 26636810 26637076 -94620454 + MTE2b LTR MaLR 2 311 -68 1 788 4520 82 0 14 chr12 26637087 26637667 -94619863 - L1Md_F2 LINE L1 -1 6581 6010 1 788 1019 68 0 0 chr12 26637667 26637795 -94619735 + L1Md_F2 LINE L1 5883 6010 -572 1 788 294 145 0 61 chr12 26637799 26637865 -94619665 + MTE2b LTR MaLR 318 379 0 1 788 639 306 0 6 chr12 26639157 26639318 -94618212 + B4 SINE B4 70 229 -63 1 788 267 54 0 0 chr12 26639388 26639425 -94618105 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 788 327 65 0 0 chr12 26639459 26639505 -94618025 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 788 684 245 72 34 chr12 26639718 26639925 -94617605 - ID_B1 SINE B4 -7 217 3 1 788 21 0 0 0 chr12 26640517 26640538 -94616992 + AT_rich Low_complexity Low_complexity 1 21 0 1 788 516 299 47 7 chr12 26641313 26641461 -94616069 - RSINE1 SINE B4 -7 158 5 1 788 522 31 0 0 chr12 26641476 26641540 -94615990 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 788 284 309 0 47 chr12 26641580 26641665 -94615865 - B3A SINE B2 -79 119 39 1 788 183 42 0 0 chr12 26642815 26642839 -94614691 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 788 273 57 0 0 chr12 26643380 26643415 -94614115 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 788 351 0 0 0 chr12 26644344 26644383 -94613147 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 788 407 402 86 24 chr12 26644486 26644741 -94612789 - B4A SINE B4 -20 272 2 1 788 1043 114 0 0 chr12 26644909 26645058 -94612472 + L1_Mus2 LINE L1 6418 6566 0 1 788 2026 113 0 27 chr12 26645532 26645833 -94611697 - L1VL2 LINE L1 -5819 516 224 1 788 3705 64 28 0 chr12 26645843 26646073 -94611457 + L1VL2 LINE L1 534 763 -5572 1 788 234 0 0 0 chr12 26646073 26646099 -94611431 + (ATG)n Simple_repeat Simple_repeat 2 27 0 1 788 14483 72 19 6 chr12 26646099 26646639 -94610891 + L1VL2 LINE L1 764 1317 -2298 1 788 1155 95 0 20 chr12 26646639 26646789 -94610741 + B1_Mus1 SINE Alu 2 148 0 1 788 14483 80 11 12 chr12 26646789 26648466 -94609064 + L1VL2 LINE L1 1318 2989 -626 1 788 655 212 8 33 chr12 26648646 26648768 -94608762 + PB1D9 SINE Alu 2 120 0 1 788 225 246 52 17 chr12 26648882 26648940 -94608590 - PB1D10 SINE Alu 0 117 58 1 788 720 290 19 10 chr12 26648892 26649101 -94608429 - ID_B1 SINE B4 -9 215 5 1 788 331 333 34 8 chr12 26649714 26649832 -94607698 - B4 SINE B4 -118 174 54 1 788 1818 161 135 19 chr12 26650609 26650971 -94606559 + MTC LTR MaLR 18 421 0 1 788 261 57 0 0 chr12 26652439 26652474 -94605056 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 788 255 31 0 0 chr12 26652676 26652708 -94604822 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 788 531 325 13 7 chr12 26652782 26652934 -94604596 - RSINE1 SINE B4 -10 155 3 1 788 416 185 172 11 chr12 26653907 26654029 -94603501 - MTD LTR MaLR -14 405 236 1 788 300 304 0 0 chr12 26654195 26654333 -94603197 + (TG)n Simple_repeat Simple_repeat 1 138 0 1 788 22 56 0 0 chr12 26654382 26654418 -94603112 + AT_rich Low_complexity Low_complexity 1 36 0 1 788 196 304 87 16 chr12 26654574 26654701 -94602829 + L2 LINE L2 1484 1619 -1800 1 788 685 33 22 0 chr12 26654716 26654808 -94602722 + (TC)n Simple_repeat Simple_repeat 2 95 0 1 788 2219 183 29 22 chr12 26654878 26655107 -94602423 + MTC LTR MaLR 5 237 -184 1 788 7424 59 29 0 chr12 26655107 26655975 -94601555 + RLTR13B1 LTR ERVK 1 893 0 2 788 2219 183 29 22 chr12 26655975 26656159 -94601371 + MTC LTR MaLR 238 421 0 1 788 431 284 51 0 chr12 26656668 26656844 -94600686 - L1MB3 LINE L1 -215 5968 5784 2 788 561 297 30 78 chr12 26657044 26657376 -94600154 - L1M3 LINE L1 -369 5814 5499 2 788 2948 144 0 5 chr12 26657467 26657886 -94599644 - MTC LTR MaLR 0 421 5 2 788 1266 90 0 0 chr12 26657952 26658130 -94599400 + (TTCTC)n Simple_repeat Simple_repeat 1 178 0 2 788 279 250 8 17 chr12 26658130 26658248 -94599282 + CT-rich Low_complexity Low_complexity 2 118 0 2 788 1062 266 85 36 chr12 26658806 26659137 -94598393 + MTEa LTR MaLR 21 367 -12 2 788 2856 34 0 0 chr12 26659216 26659536 -94597994 - L1Md_A LINE L1 0 6582 6263 2 788 618 288 0 0 chr12 26659581 26659713 -94597817 + RSINE1 SINE B4 32 163 -2 2 788 276 296 99 0 chr12 26660633 26660704 -94596826 - ID4 SINE ID -4 79 2 2 788 590 304 61 34 chr12 26660812 26661306 -94596224 + L1M3 LINE L1 4076 4601 -1545 2 788 375 292 87 78 chr12 26661718 26662088 -94595442 + L1MC LINE L1 4682 5054 -1092 2 788 874 281 75 60 chr12 26662467 26662785 -94594745 - ORR1E LTR MaLR -2 357 35 2 788 567 0 0 0 chr12 26662885 26662948 -94594582 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 2 788 195 42 0 0 chr12 26664109 26664133 -94593397 + (ATG)n Simple_repeat Simple_repeat 3 26 0 2 788 288 0 0 0 chr12 26664145 26664177 -94593353 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 788 583 289 46 20 chr12 26664196 26664348 -94593182 - RSINE1 SINE B4 -8 157 2 2 788 356 355 63 29 chr12 26664408 26664646 -94592884 - LTR40a LTR ERVL -67 452 207 2 788 333 0 0 0 chr12 26665052 26665089 -94592441 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 788 1141 264 86 21 chr12 26665456 26665792 -94591738 + MTD LTR MaLR 51 408 -11 2 788 583 357 80 58 chr12 26666004 26666106 -94591424 - LTR40b LTR ERVL 0 462 349 2 788 405 0 0 0 chr12 26666106 26666151 -94591379 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 788 583 357 80 58 chr12 26666151 26666500 -94591030 - LTR40b LTR ERVL -114 348 1 2 788 578 333 40 29 chr12 26668501 26668779 -94588751 + B4 SINE B4 1 281 -11 2 788 363 60 0 0 chr12 26668793 26668843 -94588687 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 788 387 0 0 0 chr12 26669192 26669235 -94588295 + (GAA)n Simple_repeat Simple_repeat 2 44 0 2 788 1250 83 0 11 chr12 26669235 26669417 -94588113 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 788 270 81 0 0 chr12 26669417 26669454 -94588076 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 2 788 1262 288 30 6 chr12 26669948 26670311 -94587219 + MTE2b LTR MaLR 1 372 -7 2 788 247 308 145 42 chr12 26670721 26670887 -94586643 + MLT1E3 LTR MaLR 440 622 -2 2 788 285 254 35 19 chr12 26671420 26671523 -94586007 - PB1D10 SINE Alu -2 115 12 2 788 331 333 164 18 chr12 26672524 26672854 -94584676 + MLT1D LTR MaLR 1 378 -127 2 788 1293 238 59 6 chr12 26672868 26673206 -94584324 - MTEa LTR MaLR -3 376 21 2 788 224 163 20 0 chr12 26673250 26673299 -94584231 + (TTAA)n Simple_repeat Simple_repeat 3 52 0 2 788 222 237 17 0 chr12 26673520 26673579 -94583951 + A-rich Low_complexity Low_complexity 5 64 0 2 788 399 21 0 0 chr12 26673647 26673695 -94583835 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 788 489 300 85 0 chr12 26673715 26673845 -94583685 - B3A SINE B2 -57 141 1 2 788 653 190 24 18 chr12 26674958 26675124 -94582406 + MER53 DNA hAT 4 170 -23 2 788 225 0 0 0 chr12 26676582 26676607 -94580923 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 788 437 255 13 2 chr12 26678026 26678138 -94579392 - B3A SINE B2 -80 115 2 2 788 642 251 9 84 chr12 26678753 26678966 -94578564 - B3A SINE B2 0 198 2 2 788 689 110 0 9 chr12 26679706 26679816 -94577714 + (GGGA)n Simple_repeat Simple_repeat 4 112 0 2 788 817 135 8 0 chr12 26679872 26679998 -94577532 + B1_Mur2 SINE Alu 10 136 -13 2 788 216 0 0 0 chr12 26679998 26680022 -94577508 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 788 354 280 18 61 chr12 26680085 26680199 -94577331 + B3A SINE B2 2 110 -88 2 788 276 183 31 23 chr12 26680591 26680720 -94576810 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 2 788 635 217 8 0 chr12 26680943 26681063 -94576467 + B1_Mur1 SINE Alu 24 144 -5 2 788 3643 39 0 9 chr12 26681068 26681511 -94576019 + L1Md_F2 LINE L1 6144 6582 0 2 788 1351 272 92 44 chr12 26681573 26682422 -94575108 + RMER1B Other Other 102 910 -156 2 788 3046 263 94 65 chr12 26682416 26683394 -94574136 + RMER1C Other Other 163 1342 0 2 788 626 333 105 27 chr12 26683713 26684046 -94573484 + MTEa LTR MaLR 7 365 -14 2 788 324 394 35 12 chr12 26685012 26685184 -94572346 - LTR33 LTR ERVL -299 216 41 2 788 261 0 0 0 chr12 26686219 26686248 -94571282 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 788 504 308 129 9 chr12 26687029 26687239 -94570291 + B4 SINE B4 3 237 -55 2 788 2034 148 54 90 chr12 26687243 26687379 -94570151 + MTC LTR MaLR 6 105 -316 2 788 1357 166 17 4 chr12 26687379 26687615 -94569915 - Lx4A LINE L1 -1 7057 6819 2 788 2034 148 54 90 chr12 26687615 26687901 -94569629 + MTC LTR MaLR 106 413 -8 2 788 411 301 34 101 chr12 26688242 26688449 -94569081 + B3A SINE B2 5 197 -1 2 788 1599 95 0 0 chr12 26688524 26688746 -94568784 - L1_Mm LINE L1 -2395 3488 3267 2 788 16647 65 1 1 chr12 26688746 26690833 -94566697 + L1_Mm LINE L1 3501 5587 -296 2 788 7923 57 11 9 chr12 26690833 26691814 -94565716 + L1Md_F2 LINE L1 5588 6570 -12 2 788 22 35 0 0 chr12 26691856 26691885 -94565645 + AT_rich Low_complexity Low_complexity 1 29 0 2 788 464 321 44 0 chr12 26693413 26693584 -94563946 + ID_B1 SINE B4 42 217 -7 2 788 227 224 20 0 chr12 26695024 26695073 -94562457 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 2 788 294 95 0 0 chr12 26695319 26695361 -94562169 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2 788 702 261 65 10 chr12 26695364 26695565 -94561965 + B3 SINE B2 4 215 -1 2 788 208 219 0 0 chr12 26696148 26696189 -94561341 + CT-rich Low_complexity Low_complexity 2 42 0 2 788 183 139 0 0 chr12 26696311 26696347 -94561183 + (A)n Simple_repeat Simple_repeat 1 36 0 2 788 760 266 45 131 chr12 26696535 26697115 -94560415 - L1M2 LINE L1 -480 5817 5258 2 788 330 307 91 54 chr12 26698491 26698732 -94558798 + MLT1C LTR MaLR 5 254 -213 2 788 1077 70 42 0 chr12 26699846 26699988 -94557542 + B1_Mus1 SINE Alu 1 148 0 2 788 612 0 0 0 chr12 26700868 26700936 -94556594 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 2 788 339 78 0 0 chr12 26701064 26701115 -94556415 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 788 469 231 23 9 chr12 26701402 26701622 -94555908 + (TATG)n Simple_repeat Simple_repeat 1 223 0 2 788 315 71 0 0 chr12 26702217 26702259 -94555271 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 788 666 0 0 0 chr12 26702259 26702332 -94555198 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 788 4833 159 65 32 chr12 26703558 26704515 -94553015 + Lx4B LINE L1 6013 7000 -58 2 788 607 301 114 0 chr12 26706119 26706365 -94551165 - B4A SINE B4 -18 274 1 2 788 23 0 0 0 chr12 26706455 26706478 -94551052 + AT_rich Low_complexity Low_complexity 1 23 0 2 788 21 0 0 0 chr12 26706636 26706657 -94550873 + AT_rich Low_complexity Low_complexity 1 21 0 2 788 2196 185 36 9 chr12 26708106 26708554 -94548976 + RLTR11A2 LTR ERVK 1 460 -67 2 788 7631 32 2 0 chr12 26708560 26709475 -94548055 - L1Md_F2 LINE L1 0 6582 5690 2 788 276 157 59 0 chr12 26709475 26709526 -94548004 + RLTR11A2 LTR ERVK 430 483 -45 2 788 532 226 0 13 chr12 26709611 26709768 -94547762 + GA-rich Low_complexity Low_complexity 1 155 0 2 788 3016 39 0 0 chr12 26709796 26710151 -94547379 - L1_Mus2 LINE L1 -594 5988 5634 2 788 1473 114 256 4 chr12 26710146 26710419 -94547111 + L1_Mus2 LINE L1 5983 6324 -242 2 788 407 43 0 0 chr12 26710422 26710468 -94547062 + L1Md_F2 LINE L1 6176 6221 -361 2 788 3223 51 17 17 chr12 26710570 26710990 -94546540 + L1Md_F2 LINE L1 6151 6570 -12 2 788 659 315 14 0 chr12 26710997 26711219 -94546311 + MER2 DNA MER2_type 113 337 -8 2 788 282 366 15 15 chr12 26711291 26711427 -94546103 + RSINE1 SINE B4 28 163 -2 2 788 316 330 63 22 chr12 26713276 26713536 -94543994 - RMER20B LTR ERVK -209 418 159 2 788 6317 85 6 6 chr12 26714784 26715621 -94541909 + L1_Mus3 LINE L1 5742 6578 -60 2 788 234 91 0 0 chr12 26715628 26715661 -94541869 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 788 652 255 42 30 chr12 26716026 26716356 -94541174 - MTE2b LTR MaLR -4 375 5 2 788 528 111 0 0 chr12 26716575 26716656 -94540874 + (TCTCCC)n Simple_repeat Simple_repeat 5 85 0 2 788 446 320 24 15 chr12 26716941 26717147 -94540383 + B4A SINE B4 57 264 -28 2 788 378 0 0 0 chr12 26717147 26717189 -94540341 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 788 294 95 0 0 chr12 26717294 26717336 -94540194 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 788 669 13 0 0 chr12 26717336 26717413 -94540117 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 788 932 292 95 14 chr12 26717558 26717905 -94539625 - MTEa LTR MaLR 0 379 5 2 788 1150 55 7 14 chr12 26717952 26718100 -94539430 + B1_Mus1 SINE Alu 2 148 0 2 788 569 265 35 55 chr12 26718388 26718588 -94538942 + B3A SINE B2 3 198 0 2 788 249 128 0 0 chr12 26719116 26719163 -94538367 + (A)n Simple_repeat Simple_repeat 1 47 0 2 788 554 307 117 26 chr12 26719342 26719606 -94537924 - B4 SINE B4 -4 288 1 2 788 35897 5 1 0 chr12 26719771 26725329 -94532201 + L1Md_A LINE L1 25 5586 -297 2 788 9204 3 0 0 chr12 26725329 26726325 -94531205 + L1Md_A LINE L1 5587 6582 0 2 788 22 80 0 0 chr12 26726422 26726472 -94531058 + AT_rich Low_complexity Low_complexity 1 50 0 3 788 504 0 0 0 chr12 26726615 26726671 -94530859 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 788 779 48 10 0 chr12 26726698 26726802 -94530728 + (TG)n Simple_repeat Simple_repeat 2 106 0 3 788 610 278 30 5 chr12 26726862 26727061 -94530469 - B4 SINE B4 -88 204 1 3 788 582 271 7 46 chr12 26727518 26727669 -94529861 - ID_B1 SINE B4 -65 159 15 3 788 293 322 15 83 chr12 26728161 26728293 -94529237 + MER63B DNA AcHobo 313 435 -1 3 788 498 295 0 97 chr12 26729017 26729171 -94528359 - RSINE1 SINE B4 0 165 27 3 788 4138 188 46 31 chr12 26729174 26730162 -94527368 - RLTR25A LTR ERVK -3 1100 1 3 788 441 0 0 0 chr12 26730598 26730647 -94526883 + (TTA)n Simple_repeat Simple_repeat 2 50 0 3 788 180 0 0 0 chr12 26730728 26730748 -94526782 + (T)n Simple_repeat Simple_repeat 1 20 0 3 788 371 273 16 0 chr12 26732626 26732754 -94524776 + (CA)n Simple_repeat Simple_repeat 1 130 0 3 788 617 173 45 38 chr12 26732965 26733097 -94524433 + Lx7 LINE L1 6801 6933 -763 3 98 36289 60 1 4 chr12 26733117 26739606 -94517924 + L1Md_T LINE L1 1 5589 -297 3 789 8591 34 0 0 chr12 26739606 26740602 -94516928 + L1Md_T LINE L1 5590 6585 0 3 789 2488 218 53 78 chr12 26740614 26741201 -94516329 + Lx7 LINE L1 6978 7536 -160 3 789 201 39 0 0 chr12 26741201 26741227 -94516303 + (TTATA)n Simple_repeat Simple_repeat 2 27 0 3 789 2488 218 53 78 chr12 26741227 26741330 -94516200 + Lx7 LINE L1 7537 7651 -45 3 789 428 253 0 78 chr12 26741352 26741692 -94515838 + G-rich Low_complexity Low_complexity 1 313 0 3 789 514 309 0 0 chr12 26741472 26741650 -94515880 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 3 789 306 274 0 21 chr12 26741699 26741794 -94515736 + Lx7 LINE L1 7603 7682 -14 3 789 183 80 0 0 chr12 26742879 26742904 -94514626 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 789 477 0 0 0 chr12 26742904 26742957 -94514573 + (CCA)n Simple_repeat Simple_repeat 1 53 0 3 789 308 296 0 0 chr12 26743952 26744040 -94513490 + PB1D10 SINE Alu 22 109 -8 3 789 315 227 0 178 chr12 26744470 26744577 -94512953 + MER57C2 LTR ERV1 13 100 -334 3 789 2041 136 61 88 chr12 26744950 26745392 -94512138 - RLTR23 LTR ERV1 0 430 1 3 789 611 236 11 0 chr12 26746488 26746617 -94510913 - B1_Mur1 SINE Alu -7 142 4 3 789 251 340 0 9 chr12 26748014 26748121 -94509409 + Cheshire DNA MER1_type 160 265 -2155 3 789 392 312 72 13 chr12 26748350 26748587 -94508943 + B4A SINE B4 2 252 -40 3 789 1754 178 19 113 chr12 26748766 26749190 -94508340 - ORR1C2 LTR MaLR 0 384 1 3 789 201 333 20 0 chr12 26749720 26749819 -94507711 + L2 LINE L2 2178 2278 -1141 3 789 8003 46 20 4 chr12 26750989 26752111 -94505419 - L1Md_F2 LINE L1 -3 6579 5439 3 789 1114 45 0 0 chr12 26752108 26752242 -94505288 + L1_Mm LINE L1 4767 4900 -983 3 789 306 0 0 0 chr12 26754194 26754228 -94503302 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 789 207 0 0 0 chr12 26754268 26754291 -94503239 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 3 789 314 247 13 0 chr12 26754294 26754371 -94503159 - HAL1-3A_ME LINE L1 -809 2049 1972 3 789 23 68 0 0 chr12 26757007 26757051 -94500479 + AT_rich Low_complexity Low_complexity 1 44 0 3 789 238 189 67 0 chr12 26757761 26757851 -94499679 + (TA)n Simple_repeat Simple_repeat 1 96 0 3 789 396 59 14 29 chr12 26757901 26757971 -94499559 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 3 789 183 164 49 0 chr12 26758126 26758187 -94499343 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 3 789 1449 208 95 32 chr12 26758495 26758880 -94498650 - MTD LTR MaLR -19 400 11 3 789 300 27 0 0 chr12 26759361 26759398 -94498132 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 3 789 216 245 19 0 chr12 26759398 26759441 -94498089 + polypyrimidine Low_complexity Low_complexity 4 47 0 3 789 675 199 84 0 chr12 26759445 26759576 -94497954 - B1_Mur2 SINE Alu -7 142 1 3 789 474 18 0 0 chr12 26761308 26761363 -94496167 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 789 726 44 0 0 chr12 26761803 26761893 -94495637 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 3 789 850 196 20 69 chr12 26762242 26762445 -94495085 - ORR1D2 LTR MaLR -177 193 1 3 789 277 261 17 0 chr12 26763138 26763253 -94494277 + (CA)n Simple_repeat Simple_repeat 1 117 0 3 789 407 267 56 25 chr12 26763254 26763425 -94494105 - L1MA4A LINE L1 -368 5935 5761 3 789 775 259 50 5 chr12 26763430 26763628 -94493902 + B4 SINE B4 5 211 -81 3 789 666 290 16 84 chr12 26763725 26764045 -94493485 - L1MA4A LINE L1 -568 5735 5438 3 789 438 224 36 34 chr12 26764769 26764987 -94492543 - L1MA4A LINE L1 -860 5431 5177 3 789 371 38 19 0 chr12 26765072 26765125 -94492405 + (TTG)n Simple_repeat Simple_repeat 2 55 0 3 789 319 224 33 124 chr12 26765302 26765455 -94492075 + B1F SINE Alu 1 139 -10 3 789 217 364 0 0 chr12 26765479 26765545 -94491985 + ID4_ SINE ID 10 75 -8 3 789 241 301 48 0 chr12 26765716 26765799 -94491731 + Lx8 LINE L1 6100 6186 -1287 3 789 549 0 0 0 chr12 26765800 26765861 -94491669 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 789 618 323 41 67 chr12 26765868 26766259 -94491271 + Lx8 LINE L1 6978 7358 -115 3 789 426 252 0 0 chr12 26766259 26766374 -94491156 + GA-rich Low_complexity Low_complexity 4 118 0 3 789 1480 295 101 32 chr12 26766479 26767303 -94490227 + L1MC1 LINE L1 5221 6082 -251 3 789 1445 191 146 30 chr12 26767303 26767638 -94489892 - ORR1D1 LTR MaLR 0 374 1 3 789 1480 293 104 34 chr12 26767638 26767739 -94489791 + L1MC1 LINE L1 6083 6207 -126 3 789 2015 137 12 39 chr12 26768077 26768412 -94489118 - ORR1A3 LTR MaLR 0 326 1 3 789 190 329 14 14 chr12 26770849 26770920 -94486610 + MIR SINE MIR 83 153 -55 3 789 442 290 59 35 chr12 26776749 26777003 -94480527 + CR1_Mam LINE CR1 1409 1668 -536 3 789 645 286 26 15 chr12 26779018 26779213 -94478317 + B3A SINE B2 1 197 -1 3 789 21 71 0 0 chr12 26779213 26779255 -94478275 + AT_rich Low_complexity Low_complexity 1 42 0 3 789 1316 102 0 18 chr12 26781503 26781723 -94475807 + L1_Mus4 LINE L1 6421 6636 0 3 789 708 261 74 5 chr12 26781913 26782102 -94475428 - ID_B1 SINE B4 -7 217 16 3 789 238 310 105 9 chr12 26782137 26782251 -94475279 + MLT1E1A LTR MaLR 553 677 -3 3 789 315 0 0 0 chr12 26783829 26783864 -94473666 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 789 217 327 107 6 chr12 26784198 26784331 -94473199 - L2c LINE L2 -213 3162 3025 3 789 719 152 48 3 chr12 26785471 26785765 -94471765 + (TAGA)n Simple_repeat Simple_repeat 1 307 0 3 789 379 310 26 9 chr12 26786507 26786621 -94470909 - PB1D7 SINE Alu -3 117 2 3 789 838 271 148 31 chr12 26787764 26788243 -94469287 - L1MB2 LINE L1 -6 6183 5649 3 789 587 314 13 7 chr12 26788357 26788511 -94469019 + B3A SINE B2 6 160 -38 3 789 237 250 132 0 chr12 26788555 26788631 -94468899 - L1MB2 LINE L1 -646 5525 5440 3 789 235 333 31 39 chr12 26789886 26790014 -94467516 + MLT1A LTR MaLR 1 127 -247 3 789 766 303 35 104 chr12 26790761 26791155 -94466375 + MTEa LTR MaLR 8 374 -5 3 789 315 0 0 0 chr12 26791194 26791229 -94466301 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 789 3078 37 76 3 chr12 26791318 26791701 -94465829 - IAPLTR2_Mm LTR ERVK 0 411 1 3 789 6589 61 11 6 chr12 26791703 26792528 -94465002 - IAPEz-int LTR ERVK -2 6479 5651 3 789 2842 50 0 3 chr12 26792521 26792864 -94464666 - IAPEz-int LTR ERVK -4781 1700 1359 3 789 4325 76 18 39 chr12 26792864 26793622 -94463908 - IAPEz-int LTR ERVK -5819 662 9 3 789 3517 44 92 0 chr12 26793623 26794058 -94463472 - IAPLTR2_Mm LTR ERVK 0 475 1 3 789 617 283 83 0 chr12 26794353 26794558 -94462972 + ID_B1 SINE B4 2 223 -1 3 789 462 79 0 0 chr12 26794720 26794783 -94462747 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 789 278 360 9 0 chr12 26794927 26795041 -94462489 + Tigger7 DNA MER2_type 2134 2248 -243 3 789 516 233 0 8 chr12 26795048 26795154 -94462376 + B1F2 SINE Alu 32 137 -12 3 789 636 14 0 0 chr12 26795154 26795227 -94462303 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 3 789 4652 193 51 33 chr12 26795242 26796262 -94461268 + Lx9 LINE L1 6605 7642 -2 3 789 288 306 99 113 chr12 26796421 26796793 -94460737 - MLT1C LTR MaLR -9 458 92 3 789 660 252 101 24 chr12 26798205 26798412 -94459118 + ID_B1 SINE B4 2 224 0 3 789 1073 263 90 20 chr12 26800818 26801163 -94456367 + ORR1D2 LTR MaLR 1 369 -1 3 789 600 219 46 13 chr12 26801375 26801528 -94456002 - MTEa LTR MaLR -6 373 216 3 789 501 323 57 21 chr12 26802262 26802603 -94454927 - ORR1E LTR MaLR 0 379 1 3 789 217 204 37 0 chr12 26803520 26803574 -94453956 + CT-rich Low_complexity Low_complexity 1 56 0 3 789 227 277 4 57 chr12 26803574 26803668 -94453862 - ID4 SINE ID -53 99 10 3 789 217 0 61 0 chr12 26803896 26803929 -94453601 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 789 1385 73 17 6 chr12 26804096 26804275 -94453255 - B2_Mm2 SINE B2 -14 181 1 3 789 476 334 83 15 chr12 26804781 26805157 -94452373 - L1M5 LINE L1 -2311 3835 3433 3 789 558 318 57 6 chr12 26806024 26806201 -94451329 + B4A SINE B4 9 194 -98 3 789 289 246 14 14 chr12 26806265 26806339 -94451191 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 789 883 293 0 5 chr12 26808611 26808625 -94448905 - B3 SINE B2 0 216 203 3 789 3082 17 0 9 chr12 26808625 26808974 -94448556 + ORR1A0 LTR MaLR 1 346 0 3 789 883 293 0 5 chr12 26808974 26809175 -94448355 - B3 SINE B2 -14 202 2 3 789 340 289 0 0 chr12 26809200 26809276 -94448254 - RSINE1 SINE B4 -15 150 75 3 789 1387 271 151 7 chr12 26809428 26809878 -94447652 + Lx8 LINE L1 6959 7473 0 3 789 306 0 0 0 chr12 26810018 26810052 -94447478 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 789 1131 44 7 0 chr12 26810052 26810188 -94447342 - B1_Mus1 SINE Alu -11 137 1 3 789 183 42 0 0 chr12 26810628 26810652 -94446878 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 789 180 295 66 0 chr12 26811692 26811753 -94445777 - MIRc SINE MIR -166 102 38 3 789 774 319 52 23 chr12 26814141 26814488 -94443042 + MLT1B LTR MaLR 27 383 -7 3 789 1854 209 37 12 chr12 26816175 26816581 -94440949 - MTD LTR MaLR -1 418 3 3 789 390 272 25 82 chr12 26816583 26816863 -94440667 - MTD-int LTR MaLR 0 1258 995 3 789 200 289 0 0 chr12 26817181 26817226 -94440304 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 789 262 312 41 20 chr12 26817242 26817340 -94440190 - PB1 SINE Alu -27 100 1 4 789 617 233 50 12 chr12 26817340 26817415 -94440115 - ID SINE ID -142 82 2 4 789 250 290 120 35 chr12 26817442 26817642 -94439888 + Charlie5 DNA MER1_type 2380 2596 -28 4 789 423 149 0 0 chr12 26819011 26819085 -94438445 + (GGA)n Simple_repeat Simple_repeat 3 76 0 4 789 233 231 19 0 chr12 26819086 26819138 -94438392 + GA-rich Low_complexity Low_complexity 2 54 0 4 789 363 261 131 13 chr12 26819147 26819384 -94438146 + L1M4 LINE L1 5009 5273 -873 4 789 625 256 117 44 chr12 26819455 26819753 -94437777 + Lx8 LINE L1 7001 7320 -153 4 789 382 278 203 14 chr12 26819975 26820187 -94437343 + L1M4 LINE L1 5428 5679 -495 4 789 1560 241 55 8 chr12 26822685 26823083 -94434447 - MTD LTR MaLR 0 419 3 4 789 391 61 15 29 chr12 26823275 26823343 -94434187 + (TCTCTG)n Simple_repeat Simple_repeat 2 68 0 4 789 534 31 0 0 chr12 26823360 26823424 -94434106 + (TAA)n Simple_repeat Simple_repeat 3 66 0 4 789 1349 234 113 16 chr12 26824049 26824419 -94433111 + MTD LTR MaLR 14 419 0 4 789 29 0 0 0 chr12 26824501 26824530 -94433000 + AT_rich Low_complexity Low_complexity 1 29 0 4 789 25 0 0 0 chr12 26824722 26824747 -94432783 + AT_rich Low_complexity Low_complexity 1 25 0 4 789 666 273 58 72 chr12 26824876 26825193 -94432337 + B4 SINE B4 1 271 -21 4 789 284 217 11 0 chr12 26825423 26825515 -94432015 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 789 253 260 0 56 chr12 26826174 26826293 -94431237 + PB1 SINE Alu 18 127 0 4 789 605 303 149 18 chr12 26826367 26826658 -94430872 + Lx9 LINE L1 7182 7507 -137 4 789 189 0 0 0 chr12 26826658 26826679 -94430851 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 789 605 303 149 18 chr12 26826679 26826777 -94430753 + Lx9 LINE L1 7508 7621 -23 4 789 21 0 0 0 chr12 26826790 26826811 -94430719 + AT_rich Low_complexity Low_complexity 1 21 0 4 789 180 0 0 0 chr12 26827190 26827210 -94430320 + (TTA)n Simple_repeat Simple_repeat 1 20 0 4 789 3567 120 21 9 chr12 26827301 26827871 -94429659 - L1_Mur2 LINE L1 -607 5270 4694 4 789 712 210 105 36 chr12 26827867 26828114 -94429416 + Lx4B LINE L1 6795 7058 0 4 789 259 198 147 28 chr12 26829919 26830028 -94427502 + ORR1E LTR MaLR 1 122 -237 4 789 258 246 51 60 chr12 26830099 26830216 -94427314 - MER20 DNA MER1_type -67 152 37 4 789 442 254 26 78 chr12 26830878 26831032 -94426498 - B1F SINE Alu -1 148 3 4 789 207 200 0 22 chr12 26832302 26832348 -94425182 + (TTG)n Simple_repeat Simple_repeat 3 47 0 4 789 265 229 115 0 chr12 26833417 26833478 -94424052 + ID4_ SINE ID 2 69 -14 4 789 343 336 40 48 chr12 26833521 26833646 -94423884 + B1F SINE Alu 1 124 -25 4 789 628 242 23 0 chr12 26834522 26834650 -94422880 + B1_Mur1 SINE Alu 3 133 -16 4 789 222 118 0 0 chr12 26834657 26834691 -94422839 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 789 345 47 0 0 chr12 26835866 26835909 -94421621 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 789 186 143 0 0 chr12 26835915 26835950 -94421580 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4 789 252 226 65 0 chr12 26837369 26837431 -94420099 + L1MC LINE L1 5417 5482 -851 4 789 189 0 0 0 chr12 26837509 26837530 -94420000 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 789 538 81 36 9 chr12 26838689 26838801 -94418729 + (TAGA)n Simple_repeat Simple_repeat 1 115 0 4 789 228 225 124 0 chr12 26838802 26838891 -94418639 - RMER17C LTR ERVK -141 269 170 4 789 298 220 50 0 chr12 26840286 26840386 -94417144 + (TAGA)n Simple_repeat Simple_repeat 1 105 0 4 789 662 0 0 13 chr12 26840416 26840495 -94417035 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 4 789 228 292 196 9 chr12 26840575 26840682 -94416848 - MLT2B3 LTR ERVL -218 499 373 4 789 1098 299 45 13 chr12 26840792 26841104 -94416426 + MTE2b LTR MaLR 58 379 0 4 789 683 298 85 8 chr12 26841104 26841343 -94416187 - MLT2B3 LTR ERVL -296 374 117 4 789 255 192 40 11 chr12 26841445 26841619 -94415911 + (TA)n Simple_repeat Simple_repeat 1 179 0 4 789 1766 52 0 5 chr12 26844324 26844535 -94412995 + L1Md_T LINE L1 6372 6581 -1 4 789 32 109 0 0 chr12 26845067 26845204 -94412326 + AT_rich Low_complexity Low_complexity 1 137 0 4 789 270 219 45 30 chr12 26845220 26845352 -94412178 + (ATATG)n Simple_repeat Simple_repeat 2 135 0 4 789 334 218 47 13 chr12 26845300 26845449 -94412081 + (TA)n Simple_repeat Simple_repeat 2 155 0 4 789 2389 139 0 11 chr12 26846912 26847260 -94410270 + ORR1A1 LTR MaLR 3 346 0 4 789 2001 127 70 22 chr12 26847894 26848208 -94409322 + ORR1A4 LTR MaLR 1 329 0 4 789 495 318 39 29 chr12 26848449 26848656 -94408874 - L1MEg1 LINE L1 -5886 349 141 4 789 508 263 153 28 chr12 26849874 26850050 -94407480 - B3A SINE B2 0 198 1 4 789 512 321 134 35 chr12 26850050 26850483 -94407047 + L1MC2 LINE L1 5860 6335 -9 4 789 1298 260 112 8 chr12 26850577 26850953 -94406577 - MTD LTR MaLR 0 419 5 4 789 3487 86 46 23 chr12 26851364 26851890 -94405640 - Lx3_Mus LINE L1 -549 6460 5923 4 789 3694 80 8 0 chr12 26851888 26852365 -94405165 + Lx3_Mus LINE L1 6500 6980 -29 4 789 235 234 47 29 chr12 26852369 26852541 -94404989 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 4 789 1096 250 88 66 chr12 26852792 26853156 -94404374 + ORR1D1 LTR MaLR 3 374 0 4 789 2492 8 0 0 chr12 26853307 26853569 -94403961 + L1Md_A LINE L1 6320 6581 -1 4 789 231 360 93 82 chr12 26854776 26855067 -94402463 + L2b LINE L2 3082 3375 0 4 789 268 319 95 11 chr12 26855385 26855480 -94402050 - B3 SINE B2 -16 200 98 4 789 791 306 34 0 chr12 26855513 26855719 -94401811 - B3 SINE B2 0 216 4 4 789 270 0 0 0 chr12 26855730 26855760 -94401770 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 789 4872 52 37 0 chr12 26857124 26857716 -94399814 - Lx3_Mus LINE L1 -1 7008 6395 4 789 5489 83 14 59 chr12 26857716 26858544 -94398986 + Lx3_Mus LINE L1 5600 6390 -619 4 789 380 191 18 37 chr12 26858853 26858962 -94398568 - L1_Mus4 LINE L1 -2 6634 6528 4 789 471 214 48 56 chr12 26859593 26859743 -94397787 - Lx5 LINE L1 -4 7054 6862 4 789 189 0 0 0 chr12 26859743 26859764 -94397766 + (CAAGG)n Simple_repeat Simple_repeat 2 22 0 4 789 264 325 43 17 chr12 26859994 26860110 -94397420 - MIR SINE MIR -31 231 113 4 789 609 273 14 1 chr12 26860393 26860553 -94396977 + MLT1C LTR MaLR 298 498 -7 4 789 566 311 88 54 chr12 26861902 26862198 -94395332 - Lx8 LINE L1 -443 7030 6725 4 789 245 262 130 53 chr12 26862210 26862379 -94395151 + Lx8 LINE L1 7283 7464 -9 4 789 562 303 87 130 chr12 26863151 26863542 -94393988 + MTE2a LTR MaLR 6 379 0 4 789 391 200 58 132 chr12 26863679 26863800 -94393730 - ORR1D2 LTR MaLR -6 368 257 4 789 475 320 63 89 chr12 26865157 26865428 -94392102 + B4A SINE B4 29 292 0 4 789 262 207 12 24 chr12 26865448 26865532 -94391998 + (CATA)n Simple_repeat Simple_repeat 1 83 0 4 789 183 265 26 133 chr12 26866183 26866296 -94391234 + L2c LINE L2 3286 3386 -1 4 789 547 259 236 61 chr12 26867254 26867564 -94389966 - MLT2B1 LTR ERVL -5 515 161 4 789 382 247 0 0 chr12 26867868 26867949 -94389581 + RMER15 LTR ERVL 403 483 -92 4 789 226 213 79 32 chr12 26867991 26868054 -94389476 - MLT2B1 LTR ERVL -431 84 19 4 789 481 344 0 49 chr12 26868072 26868234 -94389296 + RSINE1 SINE B4 12 165 0 4 789 293 348 26 11 chr12 26868458 26868647 -94388883 + L1MCa LINE L1 836 1027 -5481 4 789 287 277 0 0 chr12 26868729 26868794 -94388736 + MLT1C LTR MaLR 59 123 -344 4 789 312 319 27 55 chr12 26868851 26868995 -94388535 + MLT1C LTR MaLR 292 431 -36 4 789 643 278 0 0 chr12 26868995 26869121 -94388409 + RSINE1 SINE B4 4 129 -36 4 789 358 287 98 49 chr12 26869233 26869416 -94388114 + L1MCa LINE L1 1088 1279 -5229 4 98 1204 261 33 66 chr12 26869625 26869990 -94387540 + ORR1E LTR MaLR 1 353 -6 4 790 485 337 64 6 chr12 26870342 26870515 -94387015 + B4A SINE B4 6 188 -104 4 790 243 88 0 0 chr12 26870584 26870618 -94386912 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 790 205 197 28 0 chr12 26870663 26870734 -94386796 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 790 237 33 0 0 chr12 26870734 26870764 -94386766 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 790 224 261 11 0 chr12 26871879 26871971 -94385559 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 790 232 291 0 11 chr12 26873440 26873529 -94384001 - MTE2b LTR MaLR -15 364 276 4 790 304 294 0 19 chr12 26873663 26873767 -94383763 + (CAGAGA)n Simple_repeat Simple_repeat 1 102 0 4 790 466 29 29 0 chr12 26874278 26874346 -94383184 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 4 790 459 128 0 0 chr12 26875350 26875436 -94382094 + (TG)n Simple_repeat Simple_repeat 1 86 0 4 790 1161 251 44 4 chr12 26875457 26875729 -94381801 - B4 SINE B4 -7 285 3 4 790 759 358 41 52 chr12 26877700 26878062 -94379468 - MTEb LTR MaLR -2 377 1 4 790 799 188 34 27 chr12 26879836 26879984 -94377546 + B1_Mur1 SINE Alu 1 149 0 4 790 25 0 0 0 chr12 26879985 26880010 -94377520 + AT_rich Low_complexity Low_complexity 1 25 0 4 790 244 280 72 99 chr12 26880010 26880121 -94377409 + B1F SINE Alu 24 131 -18 4 790 450 0 0 0 chr12 26880121 26880171 -94377359 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 790 288 0 0 0 chr12 26880171 26880203 -94377327 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 790 987 9 0 0 chr12 26880203 26880315 -94377215 + (GAA)n Simple_repeat Simple_repeat 3 114 0 4 790 216 0 0 0 chr12 26880935 26880959 -94376571 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 790 343 0 43 0 chr12 26881045 26881092 -94376438 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 790 200 59 0 29 chr12 26881720 26881755 -94375775 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 790 210 301 28 134 chr12 26882032 26882174 -94375356 + RSINE1 SINE B4 5 131 -34 4 790 806 0 11 0 chr12 26882305 26882399 -94375131 + (TAGA)n Simple_repeat Simple_repeat 1 95 0 4 790 774 246 15 82 chr12 26883752 26883975 -94373555 + ORR1E LTR MaLR 6 200 -174 5 790 467 300 22 58 chr12 26883984 26884122 -94373408 + B1_Mur1 SINE Alu 11 143 -6 5 790 330 239 59 35 chr12 26884137 26884240 -94373290 + ORR1E LTR MaLR 205 304 -66 5 790 324 0 0 0 chr12 26885628 26885664 -94371866 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 790 806 340 42 25 chr12 26885677 26885963 -94371567 - B4 SINE B4 0 292 2 5 790 1901 147 37 9 chr12 26886012 26886335 -94371195 - Lx LINE L1 -3 6651 6320 5 790 754 251 25 46 chr12 26887073 26887269 -94370261 - ORR1D2 LTR MaLR -12 358 167 5 790 480 331 35 29 chr12 26887283 26887454 -94370076 - B4A SINE B4 -78 214 43 5 790 973 55 0 0 chr12 26888775 26888903 -94368627 + B1_Mm SINE Alu 11 138 -9 5 790 537 279 106 0 chr12 26889109 26889288 -94368242 - ID_B1 SINE B4 -24 200 3 5 790 486 350 76 15 chr12 26889375 26889572 -94367958 + ID_B1 SINE B4 1 209 -15 5 790 318 274 21 10 chr12 26889875 26889971 -94367559 - RSINE1 SINE B4 -13 152 56 5 790 433 312 68 91 chr12 26890168 26890521 -94367009 + MLT1A0 LTR MaLR 3 347 -18 5 790 203 171 0 0 chr12 26891423 26891464 -94366066 + T-rich Low_complexity Low_complexity 1 41 0 5 790 212 378 30 0 chr12 26891511 26891646 -94365884 - L2 LINE L2 -846 2573 2435 5 790 272 330 198 30 chr12 26891667 26892036 -94365494 + L2 LINE L2 2569 2999 -420 5 790 325 310 58 7 chr12 26892697 26892883 -94364647 + L1MA4 LINE L1 5834 6034 -257 5 790 667 313 39 18 chr12 26892978 26893258 -94364272 + B4A SINE B4 5 290 -2 5 790 333 206 0 0 chr12 26893283 26893385 -94364145 + GA-rich Low_complexity Low_complexity 2 103 0 5 790 613 24 47 0 chr12 26894088 26894173 -94363357 + (TCTCCC)n Simple_repeat Simple_repeat 3 91 0 5 790 273 198 0 0 chr12 26894173 26894254 -94363276 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 790 455 209 0 3 chr12 26894629 26894729 -94362801 - ORR1E LTR MaLR 0 370 271 5 790 392 184 23 0 chr12 26894902 26894989 -94362541 + GA-rich Low_complexity Low_complexity 2 90 0 5 790 332 20 0 74 chr12 26897724 26897778 -94359752 + (T)n Simple_repeat Simple_repeat 1 50 0 5 790 1274 243 104 13 chr12 26900251 26900634 -94356896 - MTD LTR MaLR 0 419 2 5 790 316 338 131 38 chr12 26900634 26900943 -94356587 - MER82 DNA MER2_type -314 339 2 5 790 697 190 6 6 chr12 26902405 26902585 -94354945 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 790 578 185 8 0 chr12 26902566 26902696 -94354834 + (TA)n Simple_repeat Simple_repeat 1 131 0 5 790 530 224 95 0 chr12 26903180 26903296 -94354234 + B1_Mur2 SINE Alu 6 132 -17 5 790 205 244 0 0 chr12 26903300 26903341 -94354189 + GA-rich Low_complexity Low_complexity 1 41 0 5 790 514 238 325 16 chr12 26906703 26906947 -94350583 - MTEa LTR MaLR -60 319 1 5 790 380 255 18 9 chr12 26909774 26909885 -94347645 + (TG)n Simple_repeat Simple_repeat 2 113 0 5 790 787 297 20 56 chr12 26909886 26910189 -94347341 - B4 SINE B4 0 292 1 5 790 645 259 95 15 chr12 26910221 26910421 -94347109 - B3 SINE B2 0 216 1 5 790 26 0 0 0 chr12 26911186 26911212 -94346318 + AT_rich Low_complexity Low_complexity 1 26 0 5 790 26 0 0 0 chr12 26912280 26912306 -94345224 + AT_rich Low_complexity Low_complexity 1 26 0 5 790 186 43 0 0 chr12 26912855 26912878 -94344652 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 5 790 419 328 10 25 chr12 26915518 26915721 -94341809 + L1MA8 LINE L1 5400 5599 -692 5 790 345 208 167 19 chr12 26915735 26915897 -94341633 + L1MA8 LINE L1 5722 5907 -384 5 790 237 254 0 31 chr12 26916232 26916297 -94341233 + MTEb LTR MaLR 278 340 -39 5 790 833 225 104 5 chr12 26916496 26916697 -94340833 - ID_B1 SINE B4 -3 221 1 5 790 414 309 161 5 chr12 26917402 26917780 -94339750 - L1MC3 LINE L1 -485 7300 6864 5 790 186 43 0 0 chr12 26918022 26918045 -94339485 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 790 644 228 0 14 chr12 26918172 26918310 -94339220 + B3 SINE B2 2 137 -79 5 790 661 260 65 35 chr12 26918473 26918704 -94338826 - B4A SINE B4 -51 241 4 5 790 181 176 0 0 chr12 26919378 26919412 -94338118 - MIRb SINE MIR -81 187 154 5 790 473 71 14 0 chr12 26920113 26920183 -94337347 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 790 234 0 0 0 chr12 26921260 26921286 -94336244 + (T)n Simple_repeat Simple_repeat 1 26 0 5 790 7858 55 9 1 chr12 26921908 26923026 -94334504 - L1Md_F2 LINE L1 -12 6570 5440 5 790 1803 84 0 0 chr12 26923022 26923259 -94334271 + L1_Mm LINE L1 5006 5242 -641 5 790 324 70 0 0 chr12 26923770 26923813 -94333717 + (TTA)n Simple_repeat Simple_repeat 2 44 0 5 790 247 369 36 9 chr12 26924425 26924537 -94332993 - L2a LINE L2 -39 3387 3273 5 790 696 310 24 24 chr12 26924711 26925002 -94332528 + B4A SINE B4 2 292 0 5 790 278 316 0 10 chr12 26925175 26925269 -94332261 + PB1D7 SINE Alu 16 106 -11 5 790 270 0 0 0 chr12 26925273 26925303 -94332227 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 790 662 303 134 17 chr12 26925331 26925734 -94331796 - MLT1C LTR MaLR -4 463 14 5 790 242 344 88 23 chr12 26925734 26925996 -94331534 - L2a LINE L2 -993 2426 2148 5 790 839 257 10 29 chr12 26926033 26926241 -94331289 + B3 SINE B2 5 208 -8 5 790 190 73 24 24 chr12 26926638 26926680 -94330850 + (CAA)n Simple_repeat Simple_repeat 2 43 0 5 790 276 242 82 13 chr12 26927971 26928068 -94329462 + ID4_ SINE ID 2 107 -45 5 790 933 9 0 0 chr12 26928086 26928192 -94329338 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 5 790 556 312 49 22 chr12 26929031 26929254 -94328276 - B4 SINE B4 -62 230 2 5 790 21 0 0 0 chr12 26929632 26929653 -94327877 + AT_rich Low_complexity Low_complexity 1 21 0 5 790 345 331 30 30 chr12 26931091 26931256 -94326274 - RMER15 LTR ERVL -13 562 398 5 790 423 0 0 0 chr12 26933673 26933720 -94323810 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 790 310 296 109 29 chr12 26933761 26933935 -94323595 + L1MCa LINE L1 583 770 -5275 5 790 508 293 66 53 chr12 26933967 26934270 -94323260 + L1MCa LINE L1 827 1133 -4912 5 790 387 223 211 21 chr12 26934298 26934440 -94323090 + B3 SINE B2 48 216 0 5 790 529 305 55 40 chr12 26934620 26934747 -94322783 + L1MCa LINE L1 1391 1513 -5238 5 790 1982 212 17 19 chr12 26934747 26935165 -94322365 + MTD LTR MaLR 3 419 0 5 790 529 305 55 40 chr12 26935165 26935437 -94322093 + L1MCa LINE L1 1514 1796 -4955 5 790 426 85 0 0 chr12 26935477 26935536 -94321994 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 5 790 563 274 70 32 chr12 26935555 26935692 -94321838 + B3A SINE B2 7 155 -43 5 790 411 21 0 0 chr12 26935692 26935740 -94321790 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 790 563 274 70 32 chr12 26935740 26935787 -94321743 + B3A SINE B2 156 198 0 5 790 514 308 42 15 chr12 26935834 26936098 -94321432 + L1MCa LINE L1 1869 2139 -4612 5 790 468 0 0 0 chr12 26936659 26936711 -94320819 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 790 305 392 29 8 chr12 26936883 26937127 -94320403 + L1MD3 LINE L1 6727 6975 -1020 5 790 1516 199 43 134 chr12 26938554 26939017 -94318513 + MTC LTR MaLR 1 421 0 5 790 242 292 92 37 chr12 26939131 26939348 -94318182 + Arthur1C DNA Tip100 73 301 -62 5 790 443 336 86 43 chr12 26939439 26939694 -94317836 - B4A SINE B4 -1 291 26 5 790 492 317 0 14 chr12 26939726 26939867 -94317663 - B1F1 SINE Alu -10 139 1 5 790 393 239 33 3 chr12 26940954 26941105 -94316425 - L1MEf LINE L1 -4013 2402 2248 5 790 3465 25 5 0 chr12 26941174 26941568 -94315962 - MTA_Mm LTR MaLR 0 396 1 5 790 654 298 14 68 chr12 26941825 26942120 -94315410 - B4A SINE B4 -10 282 4 5 790 22 35 0 0 chr12 26942734 26942763 -94314767 + AT_rich Low_complexity Low_complexity 1 29 0 5 790 1118 258 22 113 chr12 26943187 26943593 -94313937 - MTE2a LTR MaLR 0 379 11 5 790 784 303 62 19 chr12 26943892 26944151 -94313379 + B4 SINE B4 19 288 -4 5 790 452 18 18 0 chr12 26944166 26944223 -94313307 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 790 277 263 32 41 chr12 26944319 26944442 -94313088 - Lx8 LINE L1 0 7473 7352 5 790 655 254 80 60 chr12 26945380 26945581 -94311949 + MTD LTR MaLR 58 262 -157 5 790 458 130 0 0 chr12 26945537 26945606 -94311924 - RMER4A LTR ERVK -352 114 46 5 790 225 0 0 0 chr12 26945606 26945631 -94311899 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 790 396 0 0 0 chr12 26945634 26945678 -94311852 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 790 216 0 0 0 chr12 26945681 26945705 -94311825 + (GTTTG)n Simple_repeat Simple_repeat 4 27 0 5 790 299 379 75 61 chr12 26945785 26946277 -94311253 - Kanga11a DNA Tc2 -421 549 51 5 790 501 288 6 69 chr12 26946457 26946632 -94310898 + RSINE1 SINE B4 2 165 0 5 790 1314 185 123 14 chr12 26946830 26947115 -94310415 + ORR1D2 LTR MaLR 1 316 -54 5 790 3302 219 39 59 chr12 26947122 26947296 -94310234 - Lx7 LINE L1 -613 7083 6908 5 790 594 0 0 0 chr12 26947296 26947362 -94310168 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 790 3302 219 39 59 chr12 26947362 26947955 -94309575 - Lx7 LINE L1 -789 6907 6333 5 790 357 341 33 42 chr12 26947955 26948169 -94309361 - L1MEg LINE L1 -4862 1222 1011 5 790 367 354 42 55 chr12 26948580 26948816 -94308714 + MLT1E2 LTR MaLR 206 438 -189 5 790 997 146 48 43 chr12 26948817 26949003 -94308527 + B2_Mm2 SINE B2 1 187 -8 5 790 6278 57 25 32 chr12 26949294 26950108 -94307422 + RLTR13C2 LTR ERVK 1 808 0 5 790 217 138 0 79 chr12 26950132 26950195 -94307335 + A-rich Low_complexity Low_complexity 3 60 0 5 790 1158 225 130 18 chr12 26950620 26950951 -94306579 - ORR1D2 LTR MaLR -2 368 1 5 790 1027 84 0 0 chr12 26953040 26953182 -94304348 + L1_Mus2 LINE L1 6425 6566 0 5 790 846 203 47 99 chr12 26953319 26953615 -94303915 + ORR1D1 LTR MaLR 1 261 -109 5 790 314 258 31 62 chr12 26953857 26953985 -94303545 + ID_B1 SINE B4 16 139 -85 6 790 600 311 40 30 chr12 26954051 26954250 -94303280 + B4A SINE B4 86 286 -6 6 790 270 395 14 36 chr12 26954581 26954720 -94302810 + MIR SINE MIR 65 200 -62 6 790 623 266 50 19 chr12 26955571 26955732 -94301798 + ID_B1 SINE B4 53 218 -6 6 790 191 105 17 50 chr12 26956167 26956227 -94301303 + A-rich Low_complexity Low_complexity 3 60 0 6 790 228 67 0 0 chr12 26956311 26956341 -94301189 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 790 275 326 54 0 chr12 26957281 26957373 -94300157 + PB1D7 SINE Alu 6 102 -18 6 790 369 0 0 0 chr12 26957579 26957620 -94299910 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 790 305 260 72 10 chr12 26957748 26957845 -94299685 + MLT1A0 LTR MaLR 189 291 -74 6 790 847 244 33 23 chr12 26957882 26958096 -94299434 + B3 SINE B2 1 216 0 6 790 243 0 0 0 chr12 26958473 26958500 -94299030 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 790 254 308 289 10 chr12 26958529 26958730 -94298800 - Lx9 LINE L1 -215 7429 7173 6 790 729 275 35 47 chr12 26958745 26959001 -94298529 + Lx9 LINE L1 6891 7143 -501 6 790 774 0 0 0 chr12 26959306 26959392 -94298138 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 790 414 269 87 7 chr12 26959734 26959884 -94297646 - Lx8 LINE L1 -155 7318 7157 6 790 393 22 0 0 chr12 26959949 26959995 -94297535 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 790 892 228 209 13 chr12 26960226 26960541 -94296989 - MTEb LTR MaLR 0 379 3 6 790 432 0 0 0 chr12 26960607 26960655 -94296875 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 790 1023 267 58 94 chr12 26960687 26961121 -94296409 - MTD LTR MaLR -1 418 1 6 790 540 0 0 0 chr12 26961297 26961357 -94296173 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 790 339 354 55 50 chr12 26961426 26961628 -94295902 + B4A SINE B4 87 289 -3 6 790 324 0 0 0 chr12 26961640 26961676 -94295854 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 790 1083 303 51 28 chr12 26963140 26963496 -94294034 + MTE2b LTR MaLR 13 376 -3 6 790 712 264 184 61 chr12 26963643 26963970 -94293560 - ORR1D2 LTR MaLR -1 369 3 6 790 1734 158 80 72 chr12 26963990 26964352 -94293178 - ORR1B2 LTR MaLR -2 365 1 6 790 432 292 67 128 chr12 26964741 26965086 -94292444 + ORR1E LTR MaLR 27 350 -9 6 790 1244 261 53 90 chr12 26966567 26966866 -94290664 - MTEb LTR MaLR -34 345 53 6 790 455 0 18 0 chr12 26966866 26966921 -94290609 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 790 1244 261 53 90 chr12 26966921 26966978 -94290552 - MTEb LTR MaLR -327 52 2 6 790 360 301 39 83 chr12 26967582 26967763 -94289767 + ORR1E LTR MaLR 52 224 -135 6 790 243 301 41 0 chr12 26967998 26968071 -94289459 + ID4_ SINE ID 2 77 -6 6 790 21 0 0 0 chr12 26968096 26968117 -94289413 + AT_rich Low_complexity Low_complexity 1 21 0 6 790 246 284 133 64 chr12 26968358 26968378 -94289152 - B2_Mm2 SINE B2 -9 186 2 6 790 647 284 7 33 chr12 26968378 26968531 -94288999 - RSINE1 SINE B4 -14 151 3 6 790 21 36 0 0 chr12 26968546 26968574 -94288956 + AT_rich Low_complexity Low_complexity 1 28 0 6 790 1294 166 32 0 chr12 26968829 26969046 -94288484 - URR1B DNA MER1_type -1 224 1 6 790 616 345 76 29 chr12 26969052 26969525 -94288005 - MER44B DNA MER2_type -1 549 53 6 790 574 326 71 46 chr12 26972022 26972305 -94285225 + B4 SINE B4 3 292 0 6 790 243 0 0 0 chr12 26972333 26972360 -94285170 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 790 210 71 0 0 chr12 26972359 26972387 -94285143 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 790 388 312 93 6 chr12 26972513 26972674 -94284856 + MER2 DNA MER2_type 161 335 -10 6 790 577 278 135 45 chr12 26974454 26974699 -94282831 - B4A SINE B4 -21 271 5 6 790 1181 68 7 0 chr12 26974762 26974909 -94282621 + B1_Mus1 SINE Alu 1 148 0 6 790 383 0 21 0 chr12 26974909 26974956 -94282574 + (CAAAAA)n Simple_repeat Simple_repeat 6 53 0 6 790 633 302 91 78 chr12 26975510 26975830 -94281700 - ORR1E LTR MaLR -25 334 11 6 790 401 256 262 16 chr12 26978161 26978424 -94279106 - MTD LTR MaLR -14 405 28 6 790 1172 194 129 202 chr12 26978466 26979040 -94278490 - MT2A LTR ERVL -1 532 1 6 790 265 250 0 0 chr12 26980498 26980566 -94276964 - PB1D10 SINE Alu 0 117 50 6 790 909 0 0 0 chr12 26980896 26980997 -94276533 + (GA)n Simple_repeat Simple_repeat 1 101 0 6 790 831 112 0 0 chr12 26981101 26981226 -94276304 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 6 790 660 26 0 0 chr12 26981333 26981411 -94276119 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 6 790 247 221 64 85 chr12 26982281 26982375 -94275155 - MER92A LTR ERV1 -305 107 16 6 790 662 192 30 124 chr12 26982427 26982539 -94274991 + RMER15 LTR ERVL 359 446 -129 6 790 234 0 0 0 chr12 26982539 26982565 -94274965 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 6 790 662 192 30 124 chr12 26982565 26982654 -94274876 + RMER15 LTR ERVL 447 540 -35 6 790 201 143 0 0 chr12 26982661 26982696 -94274834 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 790 2138 105 37 22 chr12 26983123 26983445 -94274085 - ORR1A2 LTR MaLR 0 327 1 6 790 384 234 34 51 chr12 26983801 26983918 -94273612 + URR1B DNA MER1_type 111 225 0 6 790 712 223 128 21 chr12 26984095 26984283 -94273247 + B3 SINE B2 1 208 -8 6 790 767 168 247 6 chr12 26986146 26986320 -94271210 + B3 SINE B2 1 216 0 6 790 996 92 0 0 chr12 26986383 26986524 -94271006 + (TTCC)n Simple_repeat Simple_repeat 4 144 0 6 790 272 214 50 7 chr12 26986547 26986617 -94270913 - B1F SINE Alu -40 109 40 6 790 423 0 0 0 chr12 26986755 26986802 -94270728 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 6 790 293 306 81 7 chr12 26986999 26987149 -94270381 + ORR1D1 LTR MaLR 6 177 -182 6 790 194 337 58 19 chr12 26987994 26988097 -94269433 - L3 LINE CR1 -829 3660 3554 6 790 604 328 27 11 chr12 26988398 26988586 -94268944 + B4A SINE B4 8 198 -94 6 790 510 17 0 0 chr12 26988796 26988855 -94268675 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 790 312 102 0 0 chr12 26988855 26988903 -94268627 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 790 563 306 34 15 chr12 26988928 26989134 -94268396 + MLT1C LTR MaLR 252 461 -6 6 790 238 305 163 18 chr12 26989234 26989466 -94268064 + L2c LINE L2 3043 3306 -81 6 790 530 279 142 15 chr12 26989506 26989755 -94267775 + MTEb LTR MaLR 81 379 0 6 790 730 297 123 27 chr12 26989988 26990128 -94267402 + MER2 DNA MER2_type 15 166 -179 6 790 888 241 81 53 chr12 26990128 26990488 -94267042 + ORR1D2 LTR MaLR 1 370 0 6 790 730 297 123 27 chr12 26990488 26990648 -94266882 + MER2 DNA MER2_type 167 344 -1 6 790 384 238 86 103 chr12 26990903 26991020 -94266510 + MTEa LTR MaLR 1 115 -264 6 790 547 316 124 42 chr12 26991031 26991272 -94266258 + MTEb LTR MaLR 1 261 -118 6 790 557 265 59 91 chr12 26991284 26991504 -94266026 + MTEa LTR MaLR 147 359 -20 6 790 180 97 0 0 chr12 26991906 26991937 -94265593 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 6 790 639 26 0 0 chr12 26994304 26994381 -94263149 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 6 790 248 253 23 6 chr12 26995749 26995920 -94261610 + (TCCA)n Simple_repeat Simple_repeat 4 177 0 6 790 630 319 24 0 chr12 26996950 26997116 -94260414 + B3A SINE B2 1 170 -28 6 790 293 290 0 0 chr12 26998481 26998645 -94258885 + (CA)n Simple_repeat Simple_repeat 1 164 0 6 790 342 0 0 0 chr12 26998844 26998882 -94258648 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 790 243 0 0 0 chr12 27000243 27000270 -94257260 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 791 362 226 417 76 chr12 27001527 27001769 -94255761 - MTEb LTR MaLR -34 345 21 2 791 1369 238 61 164 chr12 27001778 27002301 -94255229 + RLTR18B LTR ERVK 42 510 -2 3 791 180 0 0 0 chr12 27002852 27002872 -94254658 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 791 1541 163 121 103 chr12 27003216 27003596 -94253934 + ORR1C2 LTR MaLR 8 384 0 5 791 772 344 19 23 chr12 27004109 27004371 -94253159 + B4A SINE B4 3 263 -29 6 791 263 267 0 0 chr12 27004370 27004415 -94253115 - B1F SINE Alu -104 45 1 7 791 835 103 0 22 chr12 27006515 27006654 -94250876 + (GGAA)n Simple_repeat Simple_repeat 3 138 0 8 791 808 246 268 57 chr12 27007352 27007613 -94249917 + MTEa LTR MaLR 1 316 -63 9 791 766 205 22 87 chr12 27010671 27010901 -94246629 - B3 SINE B2 0 216 2 1 791 1075 275 149 12 chr12 27012560 27012976 -94244554 + Lx8 LINE L1 6552 7024 -449 1 791 279 0 0 0 chr12 27012998 27013029 -94244501 + (T)n Simple_repeat Simple_repeat 1 31 0 1 791 999 167 177 0 chr12 27013209 27013401 -94244129 + URR1A DNA MER1_type 1 226 0 1 791 474 18 0 0 chr12 27014523 27014578 -94242952 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 791 434 266 25 89 chr12 27014926 27015083 -94242447 + B1F SINE Alu 1 147 -2 1 791 706 153 6 22 chr12 27015083 27015264 -94242266 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 791 599 144 6 19 chr12 27015275 27015431 -94242099 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 791 1132 241 137 14 chr12 27015553 27015903 -94241627 + MTD LTR MaLR 13 405 -14 1 791 1038 48 6 29 chr12 27019091 27019262 -94238268 + (TG)n Simple_repeat Simple_repeat 1 167 0 1 791 1670 234 43 51 chr12 27019501 27019915 -94237615 - MTD LTR MaLR -8 411 1 1 791 371 300 77 63 chr12 27022701 27022986 -94234544 - B4 SINE B4 -2 290 2 2 791 590 237 124 87 chr12 27023373 27023498 -94234032 + B3A SINE B2 3 149 -49 2 791 558 54 0 0 chr12 27023498 27023572 -94233958 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 791 590 237 124 87 chr12 27023572 27023631 -94233899 + B3A SINE B2 150 194 -4 2 791 885 193 136 5 chr12 27025771 27025969 -94231561 - URR1A DNA MER1_type -2 224 1 2 791 468 0 0 0 chr12 27028045 27028097 -94229433 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 791 252 0 0 0 chr12 27028097 27028124 -94229406 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 791 1255 226 102 10 chr12 27028838 27029151 -94228379 + MTE2b LTR MaLR 22 363 -16 2 791 1116 52 0 29 chr12 27029155 27029295 -94228235 + B1_Mm SINE Alu 2 137 -10 2 791 352 37 37 0 chr12 27029295 27029349 -94228181 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 2 791 214 200 92 0 chr12 27029361 27029426 -94228104 + MER5A DNA MER1_type 53 123 -66 2 791 383 252 200 7 chr12 27029702 27029842 -94227688 + B4A SINE B4 1 167 -125 3 791 802 161 28 14 chr12 27030085 27030230 -94227300 - B1_Mus1 SINE Alu 0 148 2 3 791 567 320 57 31 chr12 27030660 27031082 -94226448 + L1MC3 LINE L1 6463 6895 -890 3 791 394 302 26 0 chr12 27031242 27031358 -94226172 + PB1D7 SINE Alu 1 119 -1 3 791 452 325 113 8 chr12 27031359 27031731 -94225799 + L1MC3 LINE L1 7051 7461 -324 3 791 513 135 0 0 chr12 27031887 27031976 -94225554 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 791 253 273 0 83 chr12 27032968 27033040 -94224490 + MTEa LTR MaLR 34 99 -280 3 791 664 182 96 59 chr12 27033142 27033381 -94224149 + Lx9 LINE L1 1024 1271 -6337 3 791 2005 150 67 37 chr12 27033418 27033632 -94223898 + L1_Rod LINE L1 1504 1705 -4142 3 791 2739 139 12 2 chr12 27033632 27034049 -94223481 - MTC LTR MaLR 0 421 1 3 791 2005 150 67 37 chr12 27034049 27034299 -94223231 + L1_Rod LINE L1 1706 1982 -3865 3 791 6498 185 88 21 chr12 27034301 27035106 -94222424 + Lx9 LINE L1 6157 7022 -622 3 791 450 0 0 0 chr12 27035106 27035156 -94222374 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 3 791 6498 185 88 21 chr12 27035156 27035611 -94221919 + Lx9 LINE L1 7023 7513 -131 3 791 333 0 0 0 chr12 27035611 27035648 -94221882 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 791 6498 185 88 21 chr12 27035648 27035781 -94221749 + Lx9 LINE L1 7514 7643 -1 3 791 585 0 0 0 chr12 27036980 27037045 -94220485 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 791 225 0 0 0 chr12 27037045 27037070 -94220460 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 791 483 310 0 45 chr12 27037070 27037202 -94220328 - ID_B1 SINE B4 -15 209 84 4 791 760 144 197 16 chr12 27037583 27037766 -94219764 - URR1A DNA MER1_type -8 218 3 4 791 385 202 35 35 chr12 27037767 27037854 -94219676 + MTEa LTR MaLR 280 366 -13 4 791 2211 141 55 3 chr12 27038949 27039297 -94218233 - Lx4A LINE L1 -1 7057 6692 4 791 790 221 96 20 chr12 27040531 27040730 -94216800 + B3 SINE B2 3 216 0 4 791 662 279 39 7 chr12 27040748 27040903 -94216627 + RSINE1 SINE B4 4 163 -2 4 791 204 40 0 0 chr12 27040906 27040931 -94216599 + (ATG)n Simple_repeat Simple_repeat 3 27 0 4 791 360 0 0 0 chr12 27041045 27041085 -94216445 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 791 204 40 0 0 chr12 27041548 27041573 -94215957 + (A)n Simple_repeat Simple_repeat 1 25 0 5 791 396 0 0 0 chr12 27042434 27042478 -94215052 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 5 791 1685 58 0 95 chr12 27045097 27045382 -94212148 + L1Md_F2 LINE L1 6359 6582 0 5 791 231 245 75 127 chr12 27045825 27045837 -94211693 + B4A SINE B4 73 142 -150 5 791 297 257 54 54 chr12 27045837 27045985 -94211545 + B1F SINE Alu 1 148 -1 5 791 231 245 75 127 chr12 27045985 27045998 -94211532 + B4A SINE B4 143 236 -56 5 791 405 0 0 0 chr12 27046657 27046702 -94210828 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 791 225 0 0 0 chr12 27046702 27046726 -94210804 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 791 1026 270 75 28 chr12 27046735 27046990 -94210540 - B4 SINE B4 -23 269 3 5 791 609 14 0 0 chr12 27046996 27047066 -94210464 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 791 396 0 0 0 chr12 27047066 27047109 -94210421 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 791 4969 72 36 32 chr12 27047149 27047843 -94209687 + L1_Mus2 LINE L1 5870 6566 0 6 791 527 226 28 97 chr12 27048244 27048420 -94209110 + B4A SINE B4 2 165 -127 6 791 279 319 29 0 chr12 27048417 27048486 -94209044 - B4A SINE B4 -20 272 202 6 791 1440 282 69 38 chr12 27048487 27049124 -94208406 - Lx8 LINE L1 -2 7471 6815 6 791 504 258 60 8 chr12 27049264 27049397 -94208133 - B1F SINE Alu -9 140 1 6 791 182 276 73 96 chr12 27049410 27049546 -94207984 - L2 LINE L2 -2009 1410 1278 6 791 261 98 0 0 chr12 27051624 27051665 -94205865 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 6 791 392 325 0 40 chr12 27051855 27051980 -94205550 - ID_B1 SINE B4 -99 125 6 6 791 809 206 161 0 chr12 27052621 27052801 -94204729 + B3 SINE B2 4 212 -4 6 791 286 302 0 0 chr12 27053001 27053090 -94204440 + ID4_ SINE ID 17 105 -47 7 791 505 261 58 8 chr12 27053197 27053317 -94204213 - B4A SINE B4 -23 269 144 7 791 246 224 86 0 chr12 27053436 27053503 -94204027 - B4A SINE B4 -213 79 8 7 791 227 286 73 40 chr12 27053554 27053678 -94203852 + L1MA10 LINE L1 6194 6321 -13 7 791 388 288 357 49 chr12 27053995 27054341 -94203189 - MLT1C LTR MaLR -4 463 11 7 791 270 291 80 18 chr12 27055806 27055918 -94201612 - LTR16E2 LTR ERVL -14 554 436 7 791 1068 240 90 30 chr12 27056325 27056660 -94200870 + ORR1E LTR MaLR 1 355 -4 7 791 425 311 7 43 chr12 27056729 27056867 -94200663 + B4A SINE B4 160 292 0 7 791 213 132 0 0 chr12 27056875 27056913 -94200617 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 791 182 150 25 0 chr12 27056963 27057003 -94200527 + GA-rich Low_complexity Low_complexity 3 43 0 7 791 389 311 40 7 chr12 27057406 27057555 -94199975 - B4A SINE B4 -137 155 2 7 791 487 314 98 30 chr12 27057931 27058095 -94199435 + ID_B1 SINE B4 1 175 -49 8 791 226 258 165 41 chr12 27058026 27058123 -94199407 + B1F SINE Alu 18 126 -23 8 791 1029 286 97 59 chr12 27059192 27059582 -94197948 - MTD LTR MaLR -14 405 1 8 791 215 364 44 35 chr12 27059606 27059720 -94197810 - MIR3 SINE MIR -2 206 92 8 791 588 287 49 60 chr12 27059815 27060000 -94197530 + ID_B1 SINE B4 42 224 0 8 791 1165 162 98 0 chr12 27062032 27062236 -94195294 + URR1B DNA MER1_type 2 225 0 8 791 365 86 17 0 chr12 27063571 27063629 -94193901 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 791 324 64 0 0 chr12 27063629 27063676 -94193854 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 791 742 260 35 0 chr12 27063732 27063901 -94193629 - B3 SINE B2 -13 203 29 8 791 582 125 73 0 chr12 27065039 27065135 -94192395 + B3 SINE B2 26 128 -88 8 791 189 250 0 59 chr12 27065271 27065322 -94192208 - MIR3 SINE MIR -15 193 146 9 791 626 275 157 8 chr12 27065795 27066044 -94191486 - B4A SINE B4 -4 288 3 9 791 220 275 37 24 chr12 27066420 27066502 -94191028 + B3A SINE B2 18 100 -98 9 791 267 260 0 14 chr12 27066675 27066779 -94190751 + L1M5 LINE L1 3664 3765 -2381 9 791 303 244 181 45 chr12 27067109 27067242 -94190288 + L1M5 LINE L1 4150 4300 -1846 9 791 2018 179 55 27 chr12 27067340 27067741 -94189789 - MTD LTR MaLR -7 412 1 9 791 982 277 106 40 chr12 27067968 27068344 -94189186 - MTD LTR MaLR -14 405 5 9 791 264 202 184 35 chr12 27069404 27069491 -94188039 + B4A SINE B4 3 102 -190 9 791 689 158 59 22 chr12 27069490 27069626 -94187904 + MTD LTR MaLR 265 405 -14 9 791 229 311 117 84 chr12 27069949 27070258 -94187272 - Charlie2a DNA MER1_type -1381 1480 1162 9 791 587 327 77 36 chr12 27070474 27070696 -94186834 + B4A SINE B4 3 233 -59 9 791 1055 254 107 4 chr12 27072041 27072274 -94185256 - MTEa LTR MaLR -120 259 3 1 791 213 330 114 40 chr12 27073462 27073664 -94183866 + L2a LINE L2 2959 3175 -251 1 791 262 306 128 25 chr12 27074974 27075178 -94182352 + L1MB7 LINE L1 5539 5763 -421 1 791 669 288 110 37 chr12 27075249 27075494 -94182036 - B4A SINE B4 -16 276 14 1 791 266 280 9 18 chr12 27075504 27075613 -94181917 + L1MB7 LINE L1 5857 5964 -220 1 791 317 292 9 26 chr12 27075649 27075765 -94181765 + L1MB7 LINE L1 6040 6153 -31 1 791 360 152 0 0 chr12 27075796 27075862 -94181668 + GA-rich Low_complexity Low_complexity 3 68 0 1 791 186 43 0 0 chr12 27075979 27076002 -94181528 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1 791 245 255 85 38 chr12 27076756 27076862 -94180668 + Lx8 LINE L1 7355 7465 -8 1 791 229 286 39 0 chr12 27076833 27076910 -94180620 + L1MA5A LINE L1 6218 6297 0 1 791 751 298 28 33 chr12 27076962 27077177 -94180353 - B3A SINE B2 -2 214 1 1 791 386 297 90 68 chr12 27077976 27078153 -94179377 - RMER30 DNA MER1_type 0 202 22 1 791 209 206 35 49 chr12 27078531 27078674 -94178856 + GA-rich Low_complexity Low_complexity 5 145 0 1 791 262 264 42 0 chr12 27078698 27078770 -94178760 + GA-rich Low_complexity Low_complexity 5 79 0 1 791 276 275 0 14 chr12 27080786 27080856 -94176674 + RSINE1 SINE B4 1 69 -96 1 791 1448 289 96 12 chr12 27081733 27082297 -94175233 + Lx8 LINE L1 6854 7464 -9 1 791 412 275 188 28 chr12 27082361 27082717 -94174813 + L1MC LINE L1 2225 2637 -3509 1 791 534 31 0 0 chr12 27082945 27083009 -94174521 + (GA)n Simple_repeat Simple_repeat 2 65 0 1 791 393 22 0 0 chr12 27083061 27083107 -94174423 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 791 283 259 25 0 chr12 27083265 27083346 -94174184 - ID SINE ID -141 83 1 1 791 615 272 37 25 chr12 27083973 27084102 -94173428 + RSINE1 SINE B4 2 136 -29 1 791 480 48 0 0 chr12 27084102 27084165 -94173365 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 791 615 272 37 25 chr12 27084165 27084197 -94173333 + RSINE1 SINE B4 137 164 -1 1 791 296 203 47 0 chr12 27084329 27084393 -94173137 - MER2B DNA MER2_type -39 297 231 1 791 470 220 212 2 chr12 27084773 27084955 -94172575 - MTD LTR MaLR -2 417 182 1 791 885 204 36 25 chr12 27085008 27085204 -94172326 - Lx5 LINE L1 -5 7045 6848 1 791 574 250 47 0 chr12 27085360 27085488 -94172042 + RSINE1 SINE B4 2 135 -30 1 791 462 49 0 0 chr12 27085489 27085550 -94171980 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 791 1127 145 6 0 chr12 27085560 27085726 -94171804 - Lx5 LINE L1 -207 6843 6677 1 791 880 194 93 16 chr12 27085726 27085920 -94171610 - MTD LTR MaLR -209 210 2 1 791 1724 153 27 39 chr12 27086115 27086448 -94171082 + ORR1A4 LTR MaLR 1 329 0 1 791 471 224 65 0 chr12 27087597 27087704 -94169826 - ID_B1 SINE B4 -15 209 96 1 791 352 250 99 23 chr12 27087838 27087969 -94169561 - B1F SINE Alu -7 142 2 1 791 28 0 0 0 chr12 27089061 27089089 -94168441 + AT_rich Low_complexity Low_complexity 1 28 0 1 791 359 145 14 0 chr12 27089410 27089479 -94168051 + GA-rich Low_complexity Low_complexity 3 72 0 1 791 260 322 0 11 chr12 27089554 27089648 -94167882 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 791 424 252 186 1 chr12 27089729 27089892 -94167638 - B4A SINE B4 -101 191 2 1 791 327 280 30 0 chr12 27089898 27089998 -94167532 - MER33 DNA MER1_type -104 220 118 1 791 461 201 11 44 chr12 27091351 27091533 -94165997 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 1 791 188 189 38 0 chr12 27091552 27091605 -94165925 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 791 288 0 0 0 chr12 27091880 27091912 -94165618 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 791 414 148 0 0 chr12 27091912 27092013 -94165517 + (GA)n Simple_repeat Simple_repeat 2 102 0 1 791 228 67 0 0 chr12 27092013 27092043 -94165487 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 791 1220 232 44 56 chr12 27092046 27092458 -94165072 - MTE2a LTR MaLR -15 404 2 1 791 182 269 119 0 chr12 27094019 27094086 -94163444 - L2a LINE L2 -92 3334 3260 1 791 367 91 18 0 chr12 27094634 27094689 -94162841 + B1_Mur4 SINE Alu 85 140 -10 1 791 432 0 0 0 chr12 27094964 27095012 -94162518 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 791 1453 209 98 6 chr12 27095401 27095738 -94161792 + ORR1D2 LTR MaLR 3 370 0 1 791 740 171 277 11 chr12 27096647 27096824 -94160706 - URR1A DNA MER1_type -2 224 1 1 791 195 42 0 0 chr12 27097685 27097709 -94159821 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 791 403 305 81 48 chr12 27098179 27098389 -94159141 + ID_B1 SINE B4 1 217 -7 1 791 340 295 62 8 chr12 27100810 27100940 -94156590 + ORR1E LTR MaLR 1 137 -222 1 791 272 27 27 0 chr12 27100948 27100985 -94156545 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 791 648 0 0 0 chr12 27100995 27101067 -94156463 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 791 720 286 92 48 chr12 27101258 27101530 -94156000 - B4A SINE B4 -8 284 1 1 791 412 283 0 9 chr12 27101601 27101708 -94155822 + PB1D10 SINE Alu 12 117 0 1 791 184 239 132 15 chr12 27102479 27102547 -94154983 + L2b LINE L2 3095 3170 -217 1 791 383 221 96 0 chr12 27102992 27103096 -94154434 - B1F SINE Alu -9 140 27 1 791 587 301 47 97 chr12 27103559 27103773 -94153757 + MLT1C LTR MaLR 6 221 -246 1 791 3538 25 2 0 chr12 27103773 27104168 -94153362 + MTA_Mm LTR MaLR 1 396 0 1 791 587 316 72 57 chr12 27104168 27104329 -94153201 + MLT1C LTR MaLR 222 378 -89 1 791 677 288 120 76 chr12 27104349 27104686 -94152844 + MLT2B1 LTR ERVL 19 382 -138 1 791 1134 130 75 28 chr12 27104686 27104900 -94152630 + URR1A DNA MER1_type 3 226 0 1 791 677 305 132 114 chr12 27104900 27105101 -94152429 + MLT2B1 LTR ERVL 383 706 -11 1 791 193 362 38 0 chr12 27105331 27105411 -94152119 + L2b LINE L2 3272 3354 -21 1 791 919 217 84 0 chr12 27105438 27105641 -94151889 + ID_B1 SINE B4 1 220 -4 1 791 199 217 0 61 chr12 27106458 27106507 -94151023 + L3 LINE CR1 1110 1155 -3334 1 791 236 296 0 27 chr12 27107387 27107456 -94150074 + RSINE1 SINE B4 8 74 -91 1 791 702 216 202 22 chr12 27107456 27107679 -94149851 - MTD LTR MaLR -3 416 154 1 791 492 18 0 0 chr12 27107708 27107765 -94149765 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 791 239 133 22 0 chr12 27107980 27108025 -94149505 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 791 339 96 0 0 chr12 27108090 27108142 -94149388 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 791 2581 133 42 5 chr12 27108501 27108902 -94148628 - MTC LTR MaLR 0 421 6 1 791 323 295 18 62 chr12 27109348 27109460 -94148070 + L1MC4a LINE L1 6603 6709 -1173 1 791 339 231 102 78 chr12 27109643 27109797 -94147733 + PB1D10 SINE Alu 1 149 0 1 791 1076 172 138 1 chr12 27110051 27110240 -94147290 - MTD LTR MaLR -14 405 202 1 791 2192 104 49 8 chr12 27110240 27110588 -94146942 + ORR1A2 LTR MaLR 1 378 0 1 791 693 256 12 23 chr12 27110588 27110745 -94146785 - MTC LTR MaLR -249 172 18 1 791 538 125 9 9 chr12 27111412 27111419 -94146111 + (TAAA)n Simple_repeat Simple_repeat 2 8 0 1 791 1107 89 7 14 chr12 27111419 27111567 -94145963 + B1_Mus1 SINE Alu 1 147 -1 1 791 538 125 9 9 chr12 27111567 27111672 -94145858 + (TAAA)n Simple_repeat Simple_repeat 1 106 0 1 791 1646 198 55 16 chr12 27111929 27112314 -94145216 - MTC LTR MaLR -21 400 1 1 791 186 43 0 0 chr12 27113510 27113533 -94143997 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 1 791 2095 44 0 0 chr12 27114428 27114679 -94142851 - L1_Mus2 LINE L1 -652 5914 5664 1 791 4896 65 0 47 chr12 27114679 27115356 -94142174 + L1_Mus2 LINE L1 5919 6563 -3 1 791 726 303 23 5 chr12 27115614 27115833 -94141697 - ID_B1 SINE B4 0 224 2 1 791 3508 280 102 11 chr12 27116118 27116155 -94141375 + Lx8 LINE L1 6128 6166 -1307 1 791 243 0 0 0 chr12 27116155 27116182 -94141348 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 791 3508 280 102 11 chr12 27116182 27117375 -94140155 + Lx8 LINE L1 6167 7471 -2 1 791 1224 27 48 0 chr12 27117615 27117761 -94139769 - L1Md_F2 LINE L1 -247 6335 6183 1 791 1817 40 0 9 chr12 27117761 27117988 -94139542 + L1Md_F2 LINE L1 6358 6582 0 1 791 1778 191 19 35 chr12 27120621 27120954 -94136576 - MTD LTR MaLR 0 419 88 1 791 595 205 234 23 chr12 27120954 27121129 -94136401 - B3 SINE B2 0 216 5 1 791 1778 191 19 35 chr12 27121129 27121169 -94136361 - MTD LTR MaLR -332 87 52 1 791 274 234 46 9 chr12 27121746 27121854 -94135676 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 791 348 156 27 27 chr12 27121863 27121975 -94135555 + (TATG)n Simple_repeat Simple_repeat 2 113 0 1 791 229 283 0 0 chr12 27122801 27122861 -94134669 + L1MB4 LINE L1 5936 5995 -185 1 791 664 273 68 120 chr12 27122926 27123326 -94134204 + MTE2a LTR MaLR 1 379 0 1 791 915 257 115 16 chr12 27123334 27123904 -94133626 + MTE2a-int LTR MaLR 9 401 -1179 1 791 266 0 29 0 chr12 27124990 27125024 -94132506 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1 791 1126 226 63 7 chr12 27125137 27125440 -94132090 + MTEb LTR MaLR 1 320 -59 1 791 450 0 0 0 chr12 27125902 27125952 -94131578 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 791 212 370 0 27 chr12 27126108 27126183 -94131347 - RSINE1 SINE B4 -71 94 22 1 791 232 250 14 14 chr12 27126831 27126900 -94130630 + MTEa LTR MaLR 1 69 -310 1 791 366 194 18 78 chr12 27128679 27128790 -94128740 + B1F1 SINE Alu 13 117 -3 1 791 252 0 0 0 chr12 27128796 27128824 -94128706 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 791 311 46 61 15 chr12 27129307 27129373 -94128157 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 1 792 241 258 32 0 chr12 27132572 27132634 -94124896 + CT-rich Low_complexity Low_complexity 1 64 0 1 792 542 286 88 25 chr12 27132636 27132840 -94124690 - ID_B1 SINE B4 -3 221 5 1 792 243 88 0 0 chr12 27135109 27135143 -94122387 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1 792 22 0 0 0 chr12 27135658 27135680 -94121850 + AT_rich Low_complexity Low_complexity 1 22 0 1 792 261 0 0 0 chr12 27137053 27137082 -94120448 + (CTG)n Simple_repeat Simple_repeat 2 30 0 1 792 228 185 0 18 chr12 27138430 27138485 -94119045 + A-rich Low_complexity Low_complexity 4 57 0 1 792 369 247 0 0 chr12 27138486 27138563 -94118967 - B1_Mus2 SINE Alu -66 81 5 1 792 207 72 47 23 chr12 27139085 27139128 -94118402 + (TTATA)n Simple_repeat Simple_repeat 4 47 0 2 792 243 316 38 0 chr12 27139198 27139277 -94118253 + B3A SINE B2 93 174 -24 2 792 333 0 0 0 chr12 27139299 27139336 -94118194 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 792 405 0 0 0 chr12 27139336 27139380 -94118150 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 792 288 361 50 71 chr12 27140123 27140406 -94117124 + B4 SINE B4 1 277 -15 2 792 516 106 0 0 chr12 27140431 27140516 -94117014 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 792 3142 72 7 5 chr12 27142077 27142494 -94115036 - L1_Mus3 LINE L1 -8 6630 6213 2 792 21 0 0 0 chr12 27143479 27143500 -94114030 + AT_rich Low_complexity Low_complexity 1 21 0 2 792 233 247 21 86 chr12 27143531 27143624 -94113906 + L1M2 LINE L1 5647 5733 -558 2 792 310 250 108 33 chr12 27143707 27143827 -94113703 - RMER15 LTR ERVL -13 562 434 2 792 444 301 13 53 chr12 27144207 27144358 -94113172 + B4 SINE B4 37 181 -111 2 792 679 256 29 18 chr12 27144318 27144489 -94113041 - B4A SINE B4 -118 174 2 2 792 302 0 26 0 chr12 27145973 27146011 -94111519 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 2 792 1204 204 102 28 chr12 27146124 27146477 -94111053 + MTEb LTR MaLR 1 379 0 2 792 234 206 143 0 chr12 27146641 27146704 -94110826 - B4 SINE B4 -18 274 203 2 792 627 14 0 0 chr12 27146803 27146875 -94110655 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 792 3416 106 73 13 chr12 27147190 27147725 -94109805 + RMER2 LTR ERV1 1 567 0 2 792 798 272 145 10 chr12 27148340 27148644 -94108886 + RLTR26 LTR ERVK 1 345 -297 2 792 543 132 0 0 chr12 27149207 27149298 -94108232 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 792 230 27 81 0 chr12 27149694 27149731 -94107799 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 2 792 1358 237 58 20 chr12 27149832 27150176 -94107354 - ORR1D2 LTR MaLR -13 357 1 2 792 1463 314 116 74 chr12 27150176 27151004 -94106526 - ORR1D2-int LTR MaLR -53 1527 664 2 792 1185 205 138 19 chr12 27151000 27151318 -94106212 - ORR1D2 LTR MaLR -14 356 1 2 792 2960 72 0 0 chr12 27151937 27152323 -94105207 - L1_Mus3 LINE L1 -528 6110 5725 2 792 3813 69 36 8 chr12 27152323 27152846 -94104684 + L1_Mus3 LINE L1 6101 6638 0 2 792 513 0 0 0 chr12 27153227 27153284 -94104246 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 792 609 135 0 0 chr12 27153284 27153410 -94104120 + (GA)n Simple_repeat Simple_repeat 1 126 0 2 792 450 0 0 0 chr12 27153673 27153723 -94103807 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 792 423 0 0 0 chr12 27153723 27153769 -94103761 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 792 216 86 0 0 chr12 27155338 27155373 -94102157 + (T)n Simple_repeat Simple_repeat 1 35 0 2 792 1737 208 19 34 chr12 27156932 27157345 -94100185 + MTD LTR MaLR 12 418 -1 2 792 276 0 68 0 chr12 27157708 27157752 -94099778 + (CAA)n Simple_repeat Simple_repeat 2 48 0 2 792 981 207 48 9 chr12 27158523 27158752 -94098778 - MTD LTR MaLR 0 419 182 2 792 1102 87 0 6 chr12 27159282 27159444 -94098086 + B2_Mm2 SINE B2 2 162 -33 2 792 207 0 0 0 chr12 27159444 27159467 -94098063 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 792 345 24 0 0 chr12 27159937 27159979 -94097551 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 792 2540 56 53 3 chr12 27161160 27161498 -94096032 - L1Md_F2 LINE L1 -1 6581 6227 2 792 225 239 22 0 chr12 27162354 27162400 -94095130 + B4A SINE B4 30 76 -216 2 792 1208 158 69 13 chr12 27162400 27162631 -94094899 - ORR1C1 LTR MaLR 0 378 135 2 792 294 267 43 75 chr12 27164004 27164097 -94093433 + PB1 SINE Alu 36 125 -2 2 792 1244 273 73 6 chr12 27165388 27165742 -94091788 + MTE2b LTR MaLR 1 378 -1 2 792 357 136 0 0 chr12 27166066 27166132 -94091398 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 792 279 375 18 9 chr12 27167009 27167122 -94090408 + MTEa LTR MaLR 24 137 -242 2 792 700 332 64 31 chr12 27167086 27167449 -94090081 + MT2A LTR ERVL 101 464 -69 2 792 513 47 0 0 chr12 27167449 27167513 -94090017 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 792 700 332 64 31 chr12 27167513 27167568 -94089962 + MT2A LTR ERVL 465 533 0 2 792 252 218 12 71 chr12 27168104 27168144 -94089386 - MLT2C2 LTR ERVL 0 559 523 2 792 396 0 0 0 chr12 27168144 27168188 -94089342 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 792 252 218 12 71 chr12 27168188 27168231 -94089299 - MLT2C2 LTR ERVL -37 522 481 2 792 522 264 56 95 chr12 27168353 27168659 -94088871 + RMER10A LTR ERVL 130 423 -19 2 792 535 268 162 29 chr12 27169031 27169308 -94088222 - L1MEc LINE L1 -5488 912 599 2 792 3940 166 45 18 chr12 27169637 27170432 -94087098 + RLTR40 LTR ERVK 1 817 0 2 792 711 201 20 26 chr12 27171765 27171918 -94085612 + ID_B1 SINE B4 4 155 -69 2 792 2566 205 4 28 chr12 27171953 27172155 -94085375 + RMER5 LTR ERV1 7 198 -336 2 792 294 29 0 0 chr12 27172155 27172190 -94085340 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 2 792 2566 205 4 28 chr12 27172190 27172528 -94085002 + RMER5 LTR ERV1 199 534 0 2 792 237 65 0 0 chr12 27172575 27172606 -94084924 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2 792 220 275 32 94 chr12 27173557 27173674 -94083856 - MIR3 SINE MIR -30 178 68 2 792 778 197 0 0 chr12 27175258 27175405 -94082125 + RMER5 LTR ERV1 216 362 -172 2 792 24 0 0 0 chr12 27175730 27175754 -94081776 + AT_rich Low_complexity Low_complexity 1 24 0 2 792 1171 159 82 0 chr12 27176470 27176678 -94080852 - URR1A DNA MER1_type 0 226 2 2 792 270 0 0 0 chr12 27177015 27177045 -94080485 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 792 595 254 146 56 chr12 27177082 27177349 -94080181 - B4 SINE B4 0 292 2 2 792 327 194 0 0 chr12 27177787 27177880 -94079650 + GA-rich Low_complexity Low_complexity 2 94 0 2 792 427 137 17 17 chr12 27177885 27178004 -94079526 + (TCTCTG)n Simple_repeat Simple_repeat 2 120 0 2 792 603 0 0 0 chr12 27178080 27178147 -94079383 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 792 312 27 0 0 chr12 27178147 27178183 -94079347 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 792 210 228 125 12 chr12 27178693 27178773 -94078757 - MIRc SINE MIR -11 257 169 2 792 453 50 0 0 chr12 27178877 27178937 -94078593 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 792 694 279 32 95 chr12 27178966 27179251 -94078279 + B4 SINE B4 3 269 -23 2 792 26 0 0 0 chr12 27179879 27179905 -94077625 + AT_rich Low_complexity Low_complexity 1 26 0 2 792 260 42 0 130 chr12 27180128 27180182 -94077348 + L1_Mus1 LINE L1 6520 6566 -1 2 792 713 12 12 0 chr12 27181063 27181149 -94076381 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2 792 1217 62 0 0 chr12 27181149 27181294 -94076236 - B1_Mus2 SINE Alu -2 145 1 2 792 799 242 5 11 chr12 27181443 27181627 -94075903 + ORR1D1 LTR MaLR 5 187 -187 2 792 452 111 33 33 chr12 27181627 27181748 -94075782 + (TCTCTG)n Simple_repeat Simple_repeat 4 124 0 2 792 403 203 0 4 chr12 27181814 27181894 -94075636 + ORR1D1 LTR MaLR 295 421 0 2 792 299 264 0 0 chr12 27181955 27182027 -94075503 - ID4_ SINE ID -3 80 9 2 792 512 238 0 0 chr12 27182175 27182280 -94075250 - B3 SINE B2 -106 110 6 2 792 216 0 0 0 chr12 27182396 27182420 -94075110 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 2 792 648 268 16 27 chr12 27182599 27182783 -94074747 - B3A SINE B2 -15 183 2 2 792 314 267 29 19 chr12 27183136 27183239 -94074291 + B4A SINE B4 1 104 -188 2 792 2925 43 3 0 chr12 27184839 27185184 -94072346 + ORR1A0 LTR MaLR 1 346 0 2 792 863 219 18 50 chr12 27185450 27185671 -94071859 + B3 SINE B2 1 214 -2 2 792 226 56 71 36 chr12 27186692 27186748 -94070782 + (TATAA)n Simple_repeat Simple_repeat 4 61 0 2 792 872 266 141 19 chr12 27186772 27187140 -94070390 - L1MB2 LINE L1 -36 6135 5723 2 792 525 229 28 7 chr12 27187297 27187442 -94070088 + MTD LTR MaLR 272 419 0 2 792 624 27 0 0 chr12 27187892 27187966 -94069564 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 792 186 189 0 0 chr12 27187966 27188003 -94069527 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 2 792 192 254 0 0 chr12 27189022 27189081 -94068449 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 792 617 97 10 0 chr12 27189080 27189183 -94068347 + (TC)n Simple_repeat Simple_repeat 1 104 0 2 792 535 286 57 87 chr12 27189183 27189482 -94068048 - B4A SINE B4 0 292 3 2 792 813 274 18 9 chr12 27190449 27190670 -94066860 + ID_B1 SINE B4 2 224 0 2 792 183 42 0 0 chr12 27190674 27190698 -94066832 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 792 306 0 0 0 chr12 27190976 27191010 -94066520 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 792 198 71 0 0 chr12 27191699 27191727 -94065803 + (CCA)n Simple_repeat Simple_repeat 1 28 0 2 792 207 191 0 0 chr12 27191741 27191788 -94065742 + A-rich Low_complexity Low_complexity 4 50 0 2 792 1184 268 60 6 chr12 27191947 27192296 -94065234 - MTE2b LTR MaLR -11 368 1 2 792 3946 187 83 44 chr12 27192763 27193631 -94063899 - RMER19B LTR ERVK 0 902 1 2 792 686 292 9 28 chr12 27194528 27194746 -94062784 - MTE2a LTR MaLR 0 379 166 2 792 1201 286 32 11 chr12 27194742 27195113 -94062417 + MTD LTR MaLR 8 386 -33 2 792 324 0 0 0 chr12 27195176 27195212 -94062318 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 792 233 75 25 0 chr12 27195213 27195253 -94062277 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 792 419 310 16 84 chr12 27195664 27195854 -94061676 - MTE2a LTR MaLR -202 177 1 2 792 534 250 14 35 chr12 27196652 27196797 -94060733 - ID_B1 SINE B4 -1 223 82 2 792 574 296 0 0 chr12 27197687 27197829 -94059701 - B1_Mur1 SINE Alu -7 142 1 2 792 607 252 22 7 chr12 27197839 27197975 -94059555 - B4 SINE B4 -74 218 81 2 792 907 252 52 17 chr12 27198095 27198325 -94059205 + MTEb LTR MaLR 117 354 -25 3 792 305 254 30 106 chr12 27198332 27198464 -94059066 + MTEa LTR MaLR 251 372 -7 3 792 188 314 79 40 chr12 27199099 27199225 -94058305 - MIRc SINE MIR -123 145 15 3 792 210 365 0 0 chr12 27199373 27199458 -94058072 - MIR SINE MIR -121 141 57 3 792 892 210 53 14 chr12 27201209 27201417 -94056113 - B3 SINE B2 0 216 1 3 792 267 31 0 0 chr12 27201426 27201458 -94056072 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 792 384 331 145 0 chr12 27201475 27201647 -94055883 - B4A SINE B4 -95 197 1 3 792 475 348 22 119 chr12 27202387 27202707 -94054823 + B4A SINE B4 2 290 -2 3 792 486 283 60 85 chr12 27202775 27202976 -94054554 + RMER30 DNA MER1_type 7 202 0 3 792 629 266 108 40 chr12 27204187 27204527 -94053003 - RMER20B LTR ERVK -29 487 134 3 792 847 293 49 17 chr12 27204733 27204999 -94052531 - RMER1C Other Other -500 842 588 3 792 3216 200 60 33 chr12 27204993 27205161 -94052369 + RMER1C Other Other 623 783 -559 3 792 2384 91 19 0 chr12 27205161 27205480 -94052050 + ORR1A2 LTR MaLR 3 327 0 3 792 3216 200 60 33 chr12 27205480 27206009 -94051521 + RMER1C Other Other 784 1339 -3 3 792 414 39 0 0 chr12 27206714 27206766 -94050764 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 792 668 290 102 29 chr12 27207253 27207498 -94050032 - B4 SINE B4 -26 266 4 3 792 294 194 0 0 chr12 27207551 27207613 -94049917 + GA-rich Low_complexity Low_complexity 3 64 0 3 792 414 0 0 0 chr12 27208130 27208176 -94049354 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 792 288 225 189 35 chr12 27208495 27208638 -94048892 + RMER15 LTR ERVL 371 535 -40 3 792 386 213 27 54 chr12 27209336 27209568 -94047962 + (TATATG)n Simple_repeat Simple_repeat 1 225 0 3 792 266 291 39 19 chr12 27209504 27209658 -94047872 + (TG)n Simple_repeat Simple_repeat 2 158 0 3 792 723 295 87 24 chr12 27211111 27211399 -94046131 + MLT1A0 LTR MaLR 2 307 -58 3 792 234 360 82 36 chr12 27211470 27211689 -94045841 - Tigger9b DNA MER2_type -355 269 41 3 792 187 133 22 22 chr12 27212599 27212645 -94044885 + (CTTAT)n Simple_repeat Simple_repeat 1 46 0 3 792 1832 183 29 6 chr12 27213145 27213496 -94044034 - MTC LTR MaLR 0 421 63 3 792 2987 198 67 28 chr12 27213496 27214135 -94043395 - RMER1B Other Other -26 1040 377 3 792 5645 185 56 14 chr12 27214233 27215291 -94042239 - MTC-int LTR MaLR -2 1256 175 3 792 2320 144 35 128 chr12 27215291 27215783 -94041747 - RLTR41 LTR ERV1 0 446 1 3 792 5645 185 56 14 chr12 27215783 27215929 -94041601 - MTC-int LTR MaLR -1084 174 4 3 792 1935 204 57 8 chr12 27215930 27216331 -94041199 - MTC LTR MaLR 0 421 1 3 792 782 229 142 17 chr12 27216545 27216785 -94040745 - MTD LTR MaLR -90 329 60 3 792 411 21 0 0 chr12 27217632 27217680 -94039850 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 792 315 0 0 0 chr12 27218485 27218520 -94039010 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 792 188 156 0 62 chr12 27218859 27218907 -94038623 + G-rich Low_complexity Low_complexity 1 45 0 3 792 286 141 46 23 chr12 27218951 27219038 -94038492 + GA-rich Low_complexity Low_complexity 2 90 0 3 792 246 157 48 10 chr12 27219076 27219179 -94038351 + GA-rich Low_complexity Low_complexity 1 107 0 3 792 3561 28 0 0 chr12 27221301 27221697 -94035833 + MTA_Mm LTR MaLR 1 396 0 3 792 506 184 8 0 chr12 27221917 27222042 -94035488 + GA-rich Low_complexity Low_complexity 2 127 0 3 792 875 274 48 14 chr12 27222883 27223172 -94034358 - MTEa LTR MaLR -15 364 66 3 792 2330 242 61 42 chr12 27223194 27224089 -94033441 + L1_Rod LINE L1 3710 4628 -1252 3 792 851 265 29 35 chr12 27224089 27224433 -94033097 + RLTR15 LTR ERVK 1 342 -17 3 792 310 230 77 39 chr12 27224444 27224548 -94032982 + L1_Rod LINE L1 4600 4707 -1140 3 792 258 134 58 29 chr12 27224552 27224621 -94032909 + A-rich Low_complexity Low_complexity 3 73 0 3 792 305 141 0 86 chr12 27224631 27224701 -94032829 + L1_Rod LINE L1 4704 4767 -1080 3 792 265 231 0 110 chr12 27224701 27224774 -94032756 - MTEa LTR MaLR -314 65 1 3 792 1337 52 0 68 chr12 27225020 27225225 -94032305 + L1Md_F2 LINE L1 6391 6581 -1 3 792 222 222 0 16 chr12 27225235 27225250 -94032280 + A-rich Low_complexity Low_complexity 3 17 0 3 792 1104 62 7 14 chr12 27225250 27225396 -94032134 + B1_Mm SINE Alu 3 147 0 3 792 222 222 0 16 chr12 27225396 27225444 -94032086 + A-rich Low_complexity Low_complexity 18 64 0 3 792 1923 137 28 9 chr12 27225886 27226203 -94031327 - ORR1A4 LTR MaLR -2 327 5 3 792 439 258 99 7 chr12 27226361 27226513 -94031017 + MT2A LTR ERVL 362 527 -6 3 792 740 91 0 9 chr12 27226552 27226663 -94030867 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 3 792 531 0 0 0 chr12 27226765 27226824 -94030706 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 3 792 956 79 13 13 chr12 27226825 27226979 -94030551 + (TCC)n Simple_repeat Simple_repeat 3 156 0 3 792 306 0 0 0 chr12 27227848 27227882 -94029648 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 792 308 111 0 18 chr12 27227883 27227938 -94029592 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 792 521 272 55 55 chr12 27229051 27229234 -94028296 - Lx8 LINE L1 -115 7358 7176 3 792 237 333 8 42 chr12 27229258 27229377 -94028153 + Tigger5 DNA MER2_type 2292 2406 0 3 792 243 0 0 0 chr12 27230877 27230904 -94026626 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 792 1202 43 0 0 chr12 27233002 27233142 -94024388 + B1_Mus2 SINE Alu 3 142 -5 3 792 279 21 62 0 chr12 27233147 27233195 -94024335 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 3 792 325 362 50 20 chr12 27233349 27233549 -94023981 + RMER15 LTR ERVL 312 517 -58 3 792 1844 159 184 14 chr12 27233597 27233955 -94023575 + MTC LTR MaLR 1 419 -2 3 792 696 98 0 0 chr12 27234463 27234565 -94022965 + (TG)n Simple_repeat Simple_repeat 1 102 0 3 792 567 309 96 13 chr12 27234613 27234852 -94022678 - B4A SINE B4 -30 262 4 3 792 342 0 0 0 chr12 27234921 27234959 -94022571 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 3 792 191 36 0 35 chr12 27237719 27237748 -94019782 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 792 827 56 0 0 chr12 27238058 27238165 -94019365 - L1_Mus1 LINE L1 -557 6010 5904 3 792 4399 74 0 4 chr12 27238165 27238723 -94018807 + L1_Mus1 LINE L1 6012 6567 0 3 792 269 250 29 0 chr12 27238823 27238891 -94018639 + (CATA)n Simple_repeat Simple_repeat 4 73 0 3 792 300 318 91 17 chr12 27239609 27239785 -94017745 - MLT1A0 LTR MaLR -4 361 173 3 792 24 32 0 0 chr12 27240402 27240433 -94017097 + AT_rich Low_complexity Low_complexity 1 31 0 3 792 230 0 33 0 chr12 27240888 27240918 -94016612 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 792 1273 161 4 30 chr12 27240929 27241160 -94016370 + URR1B DNA MER1_type 1 225 0 3 792 196 294 37 64 chr12 27241722 27241831 -94015699 + MIRb SINE MIR 37 142 -126 3 792 236 308 40 64 chr12 27243081 27243206 -94014324 + Lx8 LINE L1 7134 7255 -218 3 792 599 13 27 0 chr12 27243292 27243367 -94014163 + (TATG)n Simple_repeat Simple_repeat 4 80 0 3 792 245 267 11 11 chr12 27244876 27245054 -94012476 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 792 251 269 0 7 chr12 27245073 27245215 -94012315 + (CA)n Simple_repeat Simple_repeat 1 141 0 3 792 274 271 109 8 chr12 27246131 27246250 -94011280 - MLT1B LTR MaLR -170 220 90 3 792 474 18 0 0 chr12 27247312 27247367 -94010163 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 792 1231 246 78 14 chr12 27247821 27248168 -94009362 - ORR1D2 LTR MaLR -1 369 1 3 792 1127 133 31 16 chr12 27248970 27249161 -94008369 - URR1B DNA MER1_type -1 224 31 3 792 504 0 0 0 chr12 27250670 27250726 -94006804 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 3 792 221 210 79 16 chr12 27251400 27251463 -94006067 + ID4_ SINE ID 8 74 -9 3 792 330 268 54 47 chr12 27252008 27252137 -94005393 + B1F SINE Alu 1 130 -19 3 792 231 36 0 0 chr12 27253415 27253443 -94004087 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 792 485 257 121 0 chr12 27253444 27253584 -94003946 + Lx8 LINE L1 6246 6402 -1071 3 792 952 101 89 6 chr12 27253594 27253763 -94003767 - B2_Mm2 SINE B2 0 195 13 3 792 399 225 0 0 chr12 27253769 27253840 -94003690 + Lx8 LINE L1 6435 6505 -968 3 792 699 120 0 0 chr12 27254742 27254850 -94002680 + (TC)n Simple_repeat Simple_repeat 2 109 0 3 792 842 258 205 31 chr12 27255625 27256113 -94001417 + RMER15 LTR ERVL 1 573 -2 3 792 497 319 50 6 chr12 27257420 27257600 -93999930 - B3A SINE B2 -9 189 2 3 792 510 296 25 25 chr12 27257837 27258000 -93999530 - RSINE1 SINE B4 0 165 3 3 792 352 177 57 0 chr12 27258472 27258613 -93998917 + CT-rich Low_complexity Low_complexity 2 150 0 3 792 2695 43 28 0 chr12 27258720 27259043 -93998487 - L1Md_F2 LINE L1 -12 6570 6239 3 792 613 226 7 7 chr12 27259511 27259658 -93997872 + B1F2 SINE Alu 2 148 -1 3 792 277 311 39 0 chr12 27259961 27260083 -93997447 - L1M4b LINE L1 -361 6677 6552 3 792 707 282 137 67 chr12 27260408 27260967 -93996563 - L1M4b LINE L1 -841 6165 5547 3 792 440 111 12 0 chr12 27260967 27261048 -93996482 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 792 707 282 137 67 chr12 27261048 27261387 -93996143 - L1M4b LINE L1 -1460 5546 5204 3 792 191 61 30 0 chr12 27261610 27261643 -93995887 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 792 443 299 123 62 chr12 27261847 27262204 -93995326 - MTE2a LTR MaLR 0 379 1 3 792 1539 237 94 28 chr12 27262284 27262818 -93994712 - L1M4b LINE L1 -2373 4633 4065 3 792 21 36 0 0 chr12 27262824 27262852 -93994678 + AT_rich Low_complexity Low_complexity 1 28 0 3 793 699 294 47 90 chr12 27263020 27263319 -93994211 - B4A SINE B4 0 292 7 3 793 294 29 0 0 chr12 27263432 27263467 -93994063 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 793 572 303 92 59 chr12 27263487 27263887 -93993643 - L1M4b LINE L1 -2988 4018 3634 3 793 477 0 0 0 chr12 27263887 27263940 -93993590 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 793 572 303 92 59 chr12 27263940 27264286 -93993244 - L1M4b LINE L1 -3373 3633 3248 3 793 197 33 33 0 chr12 27264298 27264328 -93993202 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 793 821 160 24 41 chr12 27264449 27264618 -93992912 - MTC LTR MaLR -54 367 202 3 793 592 174 16 0 chr12 27264618 27264739 -93992791 - Lx LINE L1 0 6654 6532 3 793 1279 242 39 22 chr12 27265262 27265626 -93991904 - ORR1D2 LTR MaLR 0 370 1 3 793 330 178 273 25 chr12 27265629 27265790 -93991740 - L1M4b LINE L1 -4991 2343 2143 3 793 201 109 0 52 chr12 27265835 27265893 -93991637 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 793 259 344 0 31 chr12 27266429 27266558 -93990972 - L1M4b LINE L1 -6071 1263 1139 3 793 650 0 38 0 chr12 27266854 27266934 -93990596 + (TTTTC)n Simple_repeat Simple_repeat 2 84 0 4 793 35187 71 16 7 chr12 27267007 27272915 -93984615 - L1Md_F2 LINE L1 0 6582 620 4 793 453 204 157 0 chr12 27273602 27273710 -93983820 + RSINE1 SINE B4 3 127 -38 4 793 431 123 12 0 chr12 27275396 27275477 -93982053 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 793 709 256 5 62 chr12 27275477 27275669 -93981861 - B3A SINE B2 -16 182 2 4 793 1641 150 134 6 chr12 27275754 27276082 -93981448 - ORR1B1 LTR MaLR -24 370 1 4 793 212 59 29 0 chr12 27276241 27276275 -93981255 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 4 793 1069 295 41 69 chr12 27276279 27276669 -93980861 - MTE2b LTR MaLR 0 379 1 4 793 786 341 60 33 chr12 27276672 27276944 -93980586 - L1M4b LINE L1 -6184 1150 871 4 793 1225 209 0 0 chr12 27276944 27277169 -93980361 - URR1B DNA MER1_type 0 225 1 4 793 786 341 60 33 chr12 27277169 27277415 -93980115 - L1M4b LINE L1 -6464 870 618 4 793 477 0 0 0 chr12 27277417 27277470 -93980060 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 4 793 1251 50 0 37 chr12 27277479 27277666 -93979864 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 793 1550 6 0 6 chr12 27277680 27277860 -93979670 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 793 2938 113 66 11 chr12 27277865 27278319 -93979211 - Lx LINE L1 -12 6642 6164 4 793 4159 132 4 5 chr12 27278319 27278951 -93978579 + Lx LINE L1 5587 6188 -466 4 793 366 285 79 37 chr12 27279384 27279548 -93977982 - L1MEg LINE L1 -5131 953 783 4 793 1752 73 0 44 chr12 27279558 27279831 -93977699 - RLTR13D1 LTR ERVK -108 698 438 4 793 417 328 75 20 chr12 27280535 27280828 -93976702 - L2 LINE L2 -1095 2324 2016 4 793 207 69 0 0 chr12 27281915 27281944 -93975586 + (T)n Simple_repeat Simple_repeat 1 29 0 4 793 206 288 0 15 chr12 27281954 27282021 -93975509 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 793 617 313 60 12 chr12 27282045 27282297 -93975233 - B4A SINE B4 -18 274 11 4 793 203 156 0 0 chr12 27282309 27282341 -93975189 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 4 793 513 0 0 0 chr12 27282341 27282398 -93975132 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 793 372 305 9 10 chr12 27282408 27282521 -93975009 - B4A SINE B4 -99 193 77 4 793 187 370 49 0 chr12 27282814 27282895 -93974635 - L2b LINE L2 -1 3374 3290 4 793 1695 188 32 6 chr12 27282968 27283311 -93974219 - ORR1A3-int LTR MaLR -749 1214 863 4 793 244 302 35 23 chr12 27283465 27283638 -93973892 + C-rich Low_complexity Low_complexity 2 176 0 4 793 190 95 48 0 chr12 27283882 27283924 -93973606 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 4 793 404 273 19 0 chr12 27283958 27284092 -93973438 - L1M5 LINE L1 -500 5679 5543 4 793 547 235 17 10 chr12 27284375 27284505 -93973025 + RSINE1 SINE B4 1 132 -33 4 793 794 202 0 6 chr12 27284668 27284847 -93972683 + CT-rich Low_complexity Low_complexity 1 178 0 4 793 804 226 116 17 chr12 27284847 27285079 -93972451 + MTD LTR MaLR 22 297 -122 4 793 191 62 62 0 chr12 27285521 27285553 -93971977 + (TTTTTA)n Simple_repeat Simple_repeat 4 37 0 4 793 499 257 132 39 chr12 27286359 27286541 -93970989 - B3 SINE B2 -17 199 1 4 793 246 62 0 0 chr12 27286686 27286718 -93970812 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 4 793 414 134 0 0 chr12 27286723 27286790 -93970740 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 793 387 0 0 0 chr12 27286790 27286833 -93970697 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 793 268 302 46 45 chr12 27287815 27287998 -93969532 - MamGypLTR1b LTR Gypsy 0 784 595 4 793 297 0 0 0 chr12 27290048 27290081 -93967449 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 793 708 207 0 22 chr12 27290087 27290225 -93967305 - B1_Mur1 SINE Alu -2 147 13 4 793 322 208 40 159 chr12 27290127 27290253 -93967277 - MT2B LTR ERVL -341 260 150 4 793 542 82 12 0 chr12 27290356 27290441 -93967089 + (GGA)n Simple_repeat Simple_repeat 1 86 0 4 793 330 67 0 0 chr12 27291024 27291069 -93966461 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 793 186 118 0 0 chr12 27291405 27291439 -93966091 + (T)n Simple_repeat Simple_repeat 1 34 0 4 793 266 298 164 35 chr12 27291806 27292032 -93965498 - L1MC4 LINE L1 -676 7366 7112 4 793 308 320 0 32 chr12 27292124 27292250 -93965280 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 4 793 571 253 18 40 chr12 27292338 27292537 -93964993 - B3A SINE B2 -27 189 2 4 793 755 276 54 20 chr12 27292563 27292766 -93964764 - B4 SINE B4 -76 216 7 4 793 603 0 0 0 chr12 27293030 27293097 -93964433 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 4 793 428 335 70 3 chr12 27293360 27293590 -93963940 + MLT1A0 LTR MaLR 26 276 -98 4 793 771 281 40 37 chr12 27294671 27294944 -93962586 + B4 SINE B4 1 274 -18 4 793 642 13 0 0 chr12 27295655 27295730 -93961800 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 793 1095 191 64 71 chr12 27295745 27295931 -93961599 + RMER10B LTR ERVL 4 199 -199 4 793 462 36 0 0 chr12 27295931 27295987 -93961543 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 793 1095 191 64 71 chr12 27295987 27296081 -93961449 + RMER10B LTR ERVL 200 282 -116 4 793 1137 55 0 0 chr12 27297036 27297181 -93960349 + (TCTCCC)n Simple_repeat Simple_repeat 1 145 0 4 793 537 304 115 73 chr12 27297300 27297473 -93960057 - MLT1A0 LTR MaLR -4 361 159 4 793 770 259 156 34 chr12 27297473 27297793 -93959737 + ORR1E LTR MaLR 1 359 0 4 793 537 304 115 73 chr12 27297793 27297949 -93959581 - MLT1A0 LTR MaLR -207 158 18 4 793 1410 56 0 0 chr12 27299356 27299536 -93957994 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 793 534 76 11 32 chr12 27299538 27299633 -93957897 + (TCC)n Simple_repeat Simple_repeat 2 94 0 4 793 180 77 0 0 chr12 27299656 27299682 -93957848 + (CAT)n Simple_repeat Simple_repeat 1 26 0 4 793 332 361 40 35 chr12 27299914 27300141 -93957389 + MIRb SINE MIR 7 234 -34 4 793 378 0 0 0 chr12 27300393 27300435 -93957095 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 793 288 167 0 0 chr12 27300835 27300889 -93956641 - URR1B DNA MER1_type 0 225 172 4 793 254 29 29 0 chr12 27301008 27301043 -93956487 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 793 453 316 38 0 chr12 27301132 27301290 -93956240 - B4 SINE B4 -6 286 123 4 793 311 229 136 24 chr12 27302411 27302536 -93954994 - MLT1C LTR MaLR -314 153 15 4 793 216 315 46 9 chr12 27302561 27302670 -93954860 - MIRb SINE MIR -86 182 70 4 793 25 31 0 0 chr12 27304405 27304437 -93953093 + AT_rich Low_complexity Low_complexity 1 32 0 4 793 1046 203 20 0 chr12 27304756 27304953 -93952577 + B3 SINE B2 16 216 0 4 793 324 48 0 0 chr12 27305108 27305150 -93952380 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 793 497 274 68 25 chr12 27305326 27305487 -93952043 - B4 SINE B4 -121 171 4 4 793 215 31 0 30 chr12 27306055 27306088 -93951442 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 793 639 316 21 0 chr12 27306967 27307157 -93950373 + ID_B1 SINE B4 3 196 -28 4 793 997 118 12 0 chr12 27307160 27307329 -93950201 + (GGAA)n Simple_repeat Simple_repeat 1 171 0 4 793 561 197 11 33 chr12 27307361 27307545 -93949985 + GA-rich Low_complexity Low_complexity 1 180 0 4 793 270 0 0 0 chr12 27308040 27308070 -93949460 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 793 795 298 58 18 chr12 27308581 27308858 -93948672 + B4 SINE B4 1 288 -4 4 793 672 48 0 0 chr12 27309180 27309264 -93948266 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 4 793 249 159 0 0 chr12 27309523 27309567 -93947963 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 793 228 233 16 16 chr12 27310075 27310136 -93947394 - MER117 DNA MER1_type -73 124 64 4 793 1078 259 15 112 chr12 27311190 27311224 -93946306 - MTE2a LTR MaLR -23 356 328 4 793 1220 35 0 20 chr12 27311224 27311362 -93946168 + B1_Mus1 SINE Alu 2 139 -9 4 793 266 67 22 0 chr12 27311362 27311407 -93946123 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 4 793 1078 259 15 112 chr12 27311415 27311772 -93945758 - MTE2a LTR MaLR -52 327 3 4 793 348 280 27 27 chr12 27313927 27314074 -93943456 - L1MC LINE L1 -878 5268 5122 4 793 297 260 76 68 chr12 27314065 27314111 -93943419 - L1M5 LINE L1 -1949 4197 4158 4 793 4145 64 0 4 chr12 27314111 27314629 -93942901 - L1_Mus1 LINE L1 -1 6566 6051 4 793 297 260 76 68 chr12 27314629 27314714 -93942816 - L1M5 LINE L1 -1989 4157 4065 4 793 444 82 0 0 chr12 27315040 27315101 -93942429 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 793 186 43 0 0 chr12 27315102 27315125 -93942405 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 793 25 0 0 0 chr12 27315450 27315475 -93942055 + AT_rich Low_complexity Low_complexity 1 25 0 4 793 363 23 0 0 chr12 27316406 27316450 -93941080 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 793 1395 77 6 0 chr12 27317682 27317864 -93939666 + B2_Mm1a SINE B2 2 184 -9 4 793 251 283 94 55 chr12 27318197 27318324 -93939206 - MER44A DNA MER2_type -144 195 64 4 793 226 295 95 0 chr12 27318856 27318961 -93938569 - Tigger7 DNA MER2_type -284 2207 2093 4 793 540 244 182 5 chr12 27319145 27319359 -93938171 - MTC LTR MaLR -165 256 5 4 793 206 118 0 0 chr12 27320048 27320082 -93937448 + (A)n Simple_repeat Simple_repeat 1 34 0 4 793 349 284 20 0 chr12 27320882 27320984 -93936546 - PB1 SINE Alu -9 118 15 4 793 777 58 0 0 chr12 27321149 27321252 -93936278 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 793 832 296 9 5 chr12 27321321 27321535 -93935995 - ID_B1 SINE B4 -6 218 4 4 793 337 290 76 14 chr12 27321829 27321990 -93935540 + MTE2a LTR MaLR 24 179 -240 4 793 1538 139 61 98 chr12 27322085 27322444 -93935086 + ORR1B1 LTR MaLR 41 386 -8 4 793 1074 249 104 32 chr12 27322577 27322656 -93934874 - ORR1D2 LTR MaLR 0 370 292 4 793 1384 171 181 128 chr12 27322656 27323064 -93934466 - RLTR23 LTR ERV1 0 430 1 4 793 1074 249 104 32 chr12 27323064 27323329 -93934201 - ORR1D2 LTR MaLR -79 291 1 4 793 477 50 0 0 chr12 27323661 27323721 -93933809 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 793 191 358 32 51 chr12 27323818 27323974 -93933556 - MIRb SINE MIR -2 266 114 5 793 1087 203 236 142 chr12 27324222 27324709 -93932821 - MT2A LTR ERVL 0 533 1 5 793 206 242 15 0 chr12 27324738 27324804 -93932726 + CT-rich Low_complexity Low_complexity 1 67 0 5 793 445 261 26 31 chr12 27324958 27325098 -93932432 + B1F SINE Alu 1 144 -5 5 793 198 0 0 0 chr12 27325721 27325743 -93931787 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 793 1976 148 111 23 chr12 27326854 27327241 -93930289 + MTC LTR MaLR 1 421 0 5 793 518 293 57 33 chr12 27328226 27328438 -93929092 - RMER15 LTR ERVL -13 562 346 5 793 252 313 19 121 chr12 27328793 27328917 -93928613 - B1F SINE Alu -7 113 1 5 793 486 0 0 0 chr12 27329264 27329318 -93928212 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 793 4113 173 40 5 chr12 27329319 27330064 -93927466 - Lx4B LINE L1 -618 6440 5670 5 793 2017 211 47 18 chr12 27330040 27330553 -93926977 + Lx4B LINE L1 6413 6966 -15 5 793 441 0 0 0 chr12 27330553 27330602 -93926928 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 5 793 816 325 90 23 chr12 27330602 27330617 -93926913 + Lx4B LINE L1 6967 6978 -3 5 793 506 157 16 16 chr12 27331567 27331690 -93925840 + (TG)n Simple_repeat Simple_repeat 2 124 0 5 793 600 291 66 53 chr12 27331715 27331958 -93925572 - B4A SINE B4 -4 288 43 5 793 25 0 0 0 chr12 27332082 27332107 -93925423 + AT_rich Low_complexity Low_complexity 1 25 0 5 793 1193 61 0 0 chr12 27332107 27332254 -93925276 - B1_Mus1 SINE Alu 0 148 2 5 793 336 312 172 32 chr12 27334438 27334776 -93922754 + L1M4 LINE L1 3894 4278 -1868 5 793 427 325 149 26 chr12 27334838 27335736 -93921794 + L1M4 LINE L1 4224 5238 -908 5 793 560 319 0 0 chr12 27335756 27335900 -93921630 - B1_Mur1 SINE Alu -5 144 1 5 793 636 174 41 16 chr12 27336642 27336765 -93920765 + RSINE1 SINE B4 2 127 -38 5 793 544 27 13 13 chr12 27336765 27336840 -93920690 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 793 1733 181 72 77 chr12 27336862 27337250 -93920280 - ORR1B1 LTR MaLR -8 386 1 5 793 236 323 58 39 chr12 27337906 27338009 -93919521 - B3A SINE B2 -92 106 2 5 793 427 294 75 96 chr12 27338141 27338329 -93919201 - RMER30 DNA MER1_type -1 201 18 5 793 1823 140 159 34 chr12 27339643 27339969 -93917561 + ORR1B2 LTR MaLR 1 367 0 5 793 920 294 122 60 chr12 27340159 27340643 -93916887 - MT2A LTR ERVL -7 526 13 5 793 324 0 0 0 chr12 27340658 27340694 -93916836 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 793 590 280 58 80 chr12 27342492 27342634 -93914896 - L1M3 LINE L1 -1410 4730 4587 5 793 839 219 101 10 chr12 27342634 27342832 -93914698 - B3 SINE B2 0 216 1 5 793 590 280 58 80 chr12 27342832 27343100 -93914430 - L1M3 LINE L1 -1554 4586 4329 5 793 809 29 0 19 chr12 27343125 27343230 -93914300 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 5 793 567 43 0 0 chr12 27343230 27343300 -93914230 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 793 313 252 0 147 chr12 27343313 27343325 -93914205 - MT2B2 LTR ERVL -323 261 167 5 793 592 220 0 0 chr12 27343325 27343425 -93914105 - B1_Mur3 SINE Alu -47 102 3 5 793 7441 35 5 4 chr12 27343529 27344348 -93913182 - RLTR13B2 LTR ERVK 0 822 3 5 793 478 223 32 0 chr12 27344460 27344542 -93912988 + MTD LTR MaLR 1 85 -334 5 793 874 63 18 0 chr12 27344542 27344670 -93912860 + B1_Mus2 SINE Alu 2 150 0 5 793 2024 149 63 13 chr12 27344626 27345008 -93912522 + MTC LTR MaLR 30 421 0 5 793 1279 269 106 38 chr12 27345008 27345742 -93911788 - L1M3 LINE L1 -2148 3992 3209 5 793 250 224 0 23 chr12 27346037 27346124 -93911406 + CT-rich Low_complexity Low_complexity 3 87 0 5 793 453 246 82 22 chr12 27347346 27347529 -93910001 - Charlie19a DNA Charlie -43 343 150 5 793 493 43 0 41 chr12 27347858 27347931 -93909599 + L1Md_F2 LINE L1 6509 6578 -4 5 793 540 237 0 0 chr12 27347931 27348028 -93909502 - URR1A DNA MER1_type -129 97 1 5 793 315 0 0 0 chr12 27348477 27348512 -93909018 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 793 189 0 0 0 chr12 27348512 27348532 -93908998 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 793 308 286 65 0 chr12 27348905 27348982 -93908548 - ID SINE ID -142 82 1 5 793 363 247 11 223 chr12 27349730 27349918 -93907612 - MTE2b LTR MaLR -219 160 13 5 793 182 150 25 0 chr12 27350105 27350145 -93907385 + (TATG)n Simple_repeat Simple_repeat 2 42 0 5 793 361 331 94 13 chr12 27350164 27350323 -93907207 - B4A SINE B4 -3 289 118 5 793 378 290 120 0 chr12 27350990 27351090 -93906440 - B1F2 SINE Alu -37 112 1 5 793 605 247 71 58 chr12 27351090 27351160 -93906370 - ID SINE ID -142 82 11 5 793 360 292 71 113 chr12 27351405 27351671 -93905859 - MLT1D LTR MaLR -230 275 21 5 793 189 250 0 0 chr12 27351766 27351842 -93905688 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 793 1436 259 7 116 chr12 27352703 27353118 -93904412 - MTE2a LTR MaLR -2 377 8 5 793 2259 121 15 12 chr12 27353596 27353922 -93903608 - ORR1A4 LTR MaLR 0 329 3 5 793 1190 244 43 25 chr12 27354399 27354504 -93903026 - MTD LTR MaLR -20 399 285 5 793 3917 61 2 16 chr12 27354504 27354988 -93902542 - L1Md_F2 LINE L1 -5 6577 6101 5 793 1190 285 60 62 chr12 27354988 27355295 -93902235 - MTD LTR MaLR -91 328 1 5 793 25 51 0 0 chr12 27356430 27356469 -93901061 + AT_rich Low_complexity Low_complexity 1 39 0 5 793 23 0 0 0 chr12 27356875 27356898 -93900632 + AT_rich Low_complexity Low_complexity 1 23 0 5 793 417 290 10 0 chr12 27357531 27357631 -93899899 + PB1D10 SINE Alu 17 117 0 5 793 790 321 135 68 chr12 27357918 27358612 -93898918 + RMER13A LTR ERVK 21 761 -99 5 793 905 277 62 7 chr12 27358679 27358955 -93898575 + B4A SINE B4 1 291 -1 5 793 31 26 0 0 chr12 27358979 27359017 -93898513 + AT_rich Low_complexity Low_complexity 1 38 0 5 793 262 225 117 53 chr12 27360855 27360987 -93896543 - MIR SINE MIR -90 172 31 5 793 2860 135 19 60 chr12 27361566 27362046 -93895484 + Lx3B LINE L1 6509 6968 -5 5 793 275 0 0 28 chr12 27362053 27362089 -93895441 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 793 4113 81 18 4 chr12 27363290 27363834 -93893696 - L1_Mus3 LINE L1 -7 6631 6080 5 793 1374 96 115 0 chr12 27363834 27364042 -93893488 + L1_Mus3 LINE L1 5875 6106 -532 5 793 224 160 0 20 chr12 27364579 27364630 -93892900 + T-rich Low_complexity Low_complexity 3 52 0 5 793 182 250 20 40 chr12 27365571 27365621 -93891909 - MIRm SINE MIR -160 116 68 5 793 705 323 29 53 chr12 27365749 27366030 -93891500 + B4 SINE B4 3 276 -16 5 793 547 267 106 92 chr12 27366732 27367095 -93890435 - ORR1E LTR MaLR 0 370 18 5 793 222 164 0 82 chr12 27368695 27368768 -93888762 + A-rich Low_complexity Low_complexity 5 71 0 5 793 185 65 32 0 chr12 27368787 27368818 -93888712 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 5 793 318 139 0 0 chr12 27369009 27369081 -93888449 + (A)n Simple_repeat Simple_repeat 1 72 0 5 793 284 281 157 12 chr12 27369412 27369578 -93887952 - L2a LINE L2 -264 3162 2973 5 793 21 36 0 0 chr12 27370289 27370317 -93887213 + AT_rich Low_complexity Low_complexity 1 28 0 5 793 508 250 10 0 chr12 27371072 27371176 -93886354 - B3A SINE B2 -91 107 3 5 793 340 360 113 11 chr12 27371562 27371739 -93885791 + B4A SINE B4 43 237 -55 5 793 1090 283 61 29 chr12 27371989 27372367 -93885163 + MTD LTR MaLR 11 400 -19 5 793 885 335 69 17 chr12 27375923 27376387 -93881143 + MT2A LTR ERVL 2 489 -44 5 793 526 239 11 0 chr12 27376387 27376563 -93880967 + (TA)n Simple_repeat Simple_repeat 2 179 0 5 793 1300 214 237 23 chr12 27376648 27376999 -93880531 + RLTR20C LTR ERVK 1 439 -95 5 793 450 0 0 0 chr12 27376999 27377049 -93880481 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 793 1300 214 237 23 chr12 27377049 27377136 -93880394 + RLTR20C LTR ERVK 440 533 -1 5 793 533 61 12 0 chr12 27377147 27377229 -93880301 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 793 275 301 135 10 chr12 27377650 27377754 -93879776 - PB1D10 SINE Alu -25 124 8 5 793 3972 76 38 2 chr12 27378063 27378563 -93878967 + L1Md_F2 LINE L1 6063 6580 -2 5 793 1276 272 65 23 chr12 27378632 27379016 -93878514 - MTD LTR MaLR 0 419 20 5 793 820 296 36 94 chr12 27379310 27379694 -93877836 + ORR1E LTR MaLR 5 377 -2 5 793 1573 279 74 95 chr12 27379797 27380439 -93877091 + RMER19A LTR ERVK 1 737 0 5 793 3744 114 12 0 chr12 27380502 27381020 -93876510 + L1_Mus3 LINE L1 6109 6632 -6 5 793 522 136 0 0 chr12 27381699 27381710 -93875820 + (GA)n Simple_repeat Simple_repeat 2 12 0 5 793 261 0 0 0 chr12 27381710 27381739 -93875791 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 793 522 136 0 0 chr12 27381739 27381815 -93875715 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 793 1048 259 89 36 chr12 27382455 27382815 -93874715 - MTD LTR MaLR -36 383 5 5 793 303 93 0 0 chr12 27383550 27383593 -93873937 + (TCCCC)n Simple_repeat Simple_repeat 2 44 0 5 793 587 296 43 66 chr12 27383854 27384111 -93873419 - LTR86B1 LTR ERVL 0 493 243 5 793 751 320 38 41 chr12 27384205 27384472 -93873058 - B4A SINE B4 -10 282 17 5 793 567 66 0 0 chr12 27384472 27384548 -93872982 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 5 793 7643 161 38 8 chr12 27384571 27386194 -93871336 - Lx3C LINE L1 -2 6974 5304 5 793 4285 94 5 3 chr12 27386194 27386759 -93870771 - L1_Mus3 LINE L1 -3 6635 6070 5 793 5063 158 22 16 chr12 27386759 27387029 -93870501 - Lx3C LINE L1 -583 5303 5017 5 793 1384 251 69 11 chr12 27387856 27388219 -93869311 - Lx9 LINE L1 -540 7104 6721 5 793 304 220 9 57 chr12 27388933 27389039 -93868491 + GA-rich Low_complexity Low_complexity 2 102 0 5 793 579 62 0 0 chr12 27389981 27390061 -93867469 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 793 642 299 80 7 chr12 27391264 27391540 -93865990 - MLT1A0 LTR MaLR -58 307 12 6 793 779 310 13 50 chr12 27391869 27392072 -93865458 - B4A SINE B4 -3 289 96 6 793 549 243 6 92 chr12 27392072 27392235 -93865295 - B1_Mur1 SINE Alu 0 149 1 6 793 779 310 13 50 chr12 27392235 27392330 -93865200 - B4A SINE B4 -197 95 2 6 793 505 274 74 20 chr12 27392810 27392959 -93864571 + RSINE1 SINE B4 9 165 0 6 793 1964 194 105 7 chr12 27393127 27393538 -93863992 - Lx9 LINE L1 -693 6951 6501 6 99 284 264 6 0 chr12 27393954 27394128 -93863402 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 794 767 279 62 28 chr12 27394189 27394513 -93863017 - MER63D DNA AcHobo -609 452 118 6 794 206 300 17 0 chr12 27396173 27396233 -93861297 + MIR SINE MIR 41 101 -161 6 794 1300 138 5 14 chr12 27396888 27397108 -93860422 - MTC LTR MaLR -8 413 196 6 794 3667 57 9 2 chr12 27397225 27397686 -93859844 - L1Md_F2 LINE L1 0 6582 6119 6 794 2630 36 0 0 chr12 27397686 27397995 -93859535 + L1Md_A LINE L1 5804 6112 -470 6 794 1047 159 0 30 chr12 27397995 27398196 -93859334 - MTC LTR MaLR -212 195 1 6 794 311 261 116 41 chr12 27398213 27398246 -93859284 + MER97c DNA MER1_type? 93 129 -961 6 794 1757 211 35 3 chr12 27398246 27398612 -93858918 + ORR1C1 LTR MaLR 1 378 0 6 794 311 261 116 41 chr12 27398612 27398750 -93858780 + MER97c DNA MER1_type? 130 276 -814 6 794 240 191 0 0 chr12 27399115 27399157 -93858373 - MTEb LTR MaLR -334 45 4 6 794 339 284 0 10 chr12 27399559 27399655 -93857875 + MTEa LTR MaLR 2 96 -263 6 794 485 331 6 39 chr12 27399662 27399844 -93857686 + MTEa LTR MaLR 204 379 0 6 794 218 160 20 0 chr12 27400209 27400259 -93857271 + GA-rich Low_complexity Low_complexity 4 54 0 6 794 28 29 0 0 chr12 27400578 27400613 -93856917 + AT_rich Low_complexity Low_complexity 1 35 0 6 794 340 261 39 0 chr12 27401037 27401167 -93856363 + (TG)n Simple_repeat Simple_repeat 1 135 0 6 794 216 0 0 0 chr12 27401959 27401983 -93855547 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 794 228 292 85 0 chr12 27402597 27402703 -93854827 - L1MA6 LINE L1 -111 6189 6075 6 794 492 296 92 0 chr12 27402806 27402958 -93854572 - MTEa LTR MaLR -208 171 6 6 794 206 100 23 70 chr12 27403080 27403113 -93854417 + polypurine Low_complexity Low_complexity 3 36 0 6 794 600 53 0 0 chr12 27403113 27403189 -93854341 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 6 794 543 162 0 0 chr12 27404179 27404278 -93853252 + (CGTG)n Simple_repeat Simple_repeat 1 99 0 6 794 811 319 27 5 chr12 27404311 27404578 -93852952 - B4 SINE B4 -3 289 14 6 794 508 306 119 0 chr12 27404583 27404776 -93852754 - Lx8 LINE L1 -559 6914 6699 6 794 519 148 0 0 chr12 27406805 27406893 -93850637 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 6 794 359 279 90 0 chr12 27406925 27407036 -93850494 - B4A SINE B4 -171 121 1 6 794 786 211 0 0 chr12 27407119 27407299 -93850231 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 794 189 107 0 0 chr12 27407303 27407331 -93850199 + (TATG)n Simple_repeat Simple_repeat 3 30 0 6 794 1120 248 25 21 chr12 27407334 27407618 -93849912 + MTE2b LTR MaLR 87 371 -8 6 794 455 233 179 7 chr12 27409695 27409846 -93847684 - MTEa LTR MaLR -5 374 198 6 794 267 292 67 0 chr12 27410840 27410929 -93846601 - MTEa LTR MaLR -257 102 8 6 794 256 253 141 68 chr12 27411061 27411118 -93846412 + MLT1D LTR MaLR 216 271 -234 6 794 1214 233 103 6 chr12 27411118 27411459 -93846071 - ORR1D1 LTR MaLR 0 374 1 6 794 256 253 141 68 chr12 27411459 27411592 -93845938 + MLT1D LTR MaLR 272 420 -85 6 794 21 36 0 0 chr12 27411726 27411754 -93845776 + AT_rich Low_complexity Low_complexity 1 28 0 6 794 624 310 35 10 chr12 27411849 27412051 -93845479 - B4A SINE B4 -1 291 85 6 794 368 123 14 0 chr12 27412080 27412153 -93845377 + (TTTA)n Simple_repeat Simple_repeat 1 74 0 6 794 7406 173 51 25 chr12 27412153 27413577 -93843953 - Lx5 LINE L1 0 7050 5589 6 794 3438 203 62 64 chr12 27413588 27414492 -93843038 + RMER19B LTR ERVK 1 902 0 6 794 2803 171 68 11 chr12 27414492 27414699 -93842831 - Lx5 LINE L1 -300 5577 5343 6 794 3398 125 31 6 chr12 27414699 27415214 -93842316 - Lx2 LINE L1 0 6997 6470 6 794 2803 171 68 11 chr12 27415214 27415550 -93841980 - Lx5 LINE L1 -535 5342 5004 6 794 12782 159 20 16 chr12 27415519 27418269 -93839261 - Lx5 LINE L1 -2277 3600 840 6 794 219 146 0 0 chr12 27421180 27421221 -93836309 + (T)n Simple_repeat Simple_repeat 1 41 0 6 794 4845 120 30 26 chr12 27422457 27423407 -93834123 + L1_Mus3 LINE L1 5614 6632 -6 6 794 1071 112 0 0 chr12 27423583 27423744 -93833786 + (TCCC)n Simple_repeat Simple_repeat 4 164 0 6 794 855 298 10 52 chr12 27425208 27425568 -93831962 - ORR1E LTR MaLR -43 327 2 6 794 586 312 127 12 chr12 27426279 27426532 -93830998 + MLT2D LTR ERVL 19 300 -114 6 794 280 164 25 41 chr12 27426554 27426675 -93830855 + (TCTCTG)n Simple_repeat Simple_repeat 2 120 0 6 794 552 56 0 0 chr12 27426678 27426750 -93830780 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 794 340 356 41 25 chr12 27426988 27427184 -93830346 + MLT2B4 LTR ERVL 80 278 -278 6 794 340 303 10 10 chr12 27427199 27427299 -93830231 + MTE2b LTR MaLR 2 101 -278 6 794 436 337 84 30 chr12 27427295 27427497 -93830033 + MTE2b LTR MaLR 57 269 -110 6 794 24 77 0 0 chr12 27428574 27428626 -93828904 + AT_rich Low_complexity Low_complexity 1 52 0 6 794 204 294 0 0 chr12 27429080 27429131 -93828399 + GA-rich Low_complexity Low_complexity 1 51 0 6 794 15464 19 1 1 chr12 27429437 27431206 -93826324 + L1Md_T LINE L1 3819 5586 -297 6 794 8510 36 1 0 chr12 27431206 27432200 -93825330 + L1Md_T LINE L1 5587 6581 -1 6 794 1005 237 66 23 chr12 27432367 27432626 -93824904 - MTD LTR MaLR -145 274 5 6 794 185 65 32 0 chr12 27432629 27432660 -93824870 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 794 942 282 37 68 chr12 27434211 27434565 -93822965 + Lx8 LINE L1 7129 7471 -2 6 794 23 0 0 0 chr12 27435521 27435544 -93821986 + AT_rich Low_complexity Low_complexity 1 23 0 6 794 226 349 28 0 chr12 27436141 27436247 -93821283 - MIRb SINE MIR -93 175 67 6 794 229 301 54 71 chr12 27437204 27437372 -93820158 - Charlie22a DNA MER1_type -285 206 42 6 794 495 0 0 0 chr12 27437539 27437594 -93819936 + (GTGTG)n Simple_repeat Simple_repeat 1 55 0 6 794 255 31 0 0 chr12 27437597 27437629 -93819901 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 794 653 302 42 30 chr12 27437641 27437904 -93819626 + MER47A DNA MER2_type 96 361 -5 6 794 189 255 0 0 chr12 27438402 27438449 -93819081 + MIRb SINE MIR 119 165 -103 6 794 232 339 0 0 chr12 27438487 27438552 -93818978 - MTEb-int LTR MaLR -1515 65 1 6 794 1278 288 13 19 chr12 27438554 27438933 -93818597 - MTEb LTR MaLR -2 377 1 6 794 229 268 14 0 chr12 27438950 27439021 -93818509 - MLT2C2 LTR ERVL -375 89 18 6 794 26 30 0 0 chr12 27440170 27440203 -93817327 + AT_rich Low_complexity Low_complexity 1 33 0 6 794 201 256 0 0 chr12 27440319 27440444 -93817086 + (CA)n Simple_repeat Simple_repeat 1 125 0 6 794 2349 235 69 90 chr12 27441172 27442130 -93815400 + RMER17B LTR ERVK 1 938 -20 6 794 657 131 0 0 chr12 27442829 27442936 -93814594 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 6 794 899 291 18 52 chr12 27442969 27443272 -93814258 - MTE2a LTR MaLR -66 313 7 6 794 289 200 67 0 chr12 27443284 27443359 -93814171 - ID4 SINE ID -3 80 1 6 794 1267 59 6 0 chr12 27444653 27444823 -93812707 + B2_Mm1t SINE B2 1 171 -22 6 794 198 0 0 0 chr12 27444827 27444849 -93812681 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 794 285 118 0 0 chr12 27444979 27445030 -93812500 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 6 794 282 349 22 44 chr12 27445048 27445183 -93812347 + ID_B1 SINE B4 2 133 -91 6 794 585 0 0 0 chr12 27445245 27445310 -93812220 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 6 794 420 223 0 0 chr12 27445310 27445413 -93812117 + G-rich Low_complexity Low_complexity 4 106 0 6 794 357 338 24 9 chr12 27445559 27445704 -93811826 - B4 SINE B4 -150 142 2 6 794 578 346 91 6 chr12 27445704 27446219 -93811311 - Charlie1a DNA MER1_type -803 652 94 6 794 261 0 0 0 chr12 27446465 27446494 -93811036 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 794 279 0 0 0 chr12 27446494 27446524 -93811006 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 794 459 0 0 0 chr12 27446638 27446689 -93810841 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 794 419 103 26 0 chr12 27446728 27446806 -93810724 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 6 794 219 36 0 0 chr12 27446870 27446898 -93810632 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 6 794 219 88 0 0 chr12 27446976 27447010 -93810520 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 794 459 0 0 0 chr12 27447056 27447107 -93810423 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 794 198 0 0 0 chr12 27447107 27447128 -93810402 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 794 346 298 96 46 chr12 27447142 27447381 -93810149 + Charlie1a DNA MER1_type 647 897 -558 6 794 365 309 87 69 chr12 27447409 27447536 -93809994 + Charlie1a DNA MER1_type 999 1123 -332 6 794 319 261 66 44 chr12 27447536 27447672 -93809858 + B1F SINE Alu 1 139 -10 6 794 365 309 87 69 chr12 27447672 27447923 -93809607 + Charlie1a DNA MER1_type 1124 1384 -71 6 794 807 324 35 11 chr12 27448515 27448799 -93808731 - B4A SINE B4 0 292 2 6 794 827 129 14 0 chr12 27448968 27449108 -93808422 + (TCTCCC)n Simple_repeat Simple_repeat 2 143 0 6 794 312 27 0 0 chr12 27449110 27449147 -93808383 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 794 702 133 0 0 chr12 27449149 27449262 -93808268 + (GA)n Simple_repeat Simple_repeat 2 114 0 6 794 329 231 0 42 chr12 27449576 27449671 -93807859 + MER121 Unknown Unknown 163 253 -159 6 794 208 347 0 18 chr12 27450213 27450329 -93807201 + GA-rich Low_complexity Low_complexity 1 113 0 6 794 585 42 0 0 chr12 27451360 27451432 -93806098 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 794 819 254 108 26 chr12 27451511 27451825 -93805705 + Lx8 LINE L1 7121 7473 0 6 794 456 320 75 51 chr12 27451833 27452126 -93805404 + MLT1A0 LTR MaLR 47 346 -19 6 794 214 224 41 0 chr12 27452522 27452589 -93804941 + (CATG)n Simple_repeat Simple_repeat 1 69 0 6 794 508 355 51 61 chr12 27452589 27452883 -93804647 - B4 SINE B4 0 292 2 6 794 632 251 63 15 chr12 27453333 27453539 -93803991 - B3 SINE B2 0 216 1 6 794 1914 188 78 108 chr12 27454054 27454591 -93802939 + RMER19B LTR ERVK 1 521 -381 7 794 491 202 9 0 chr12 27455352 27455466 -93802064 + CT-rich Low_complexity Low_complexity 1 115 0 7 794 262 304 16 23 chr12 27455664 27455792 -93801738 + RMER15 LTR ERVL 296 422 -153 7 794 1169 75 0 0 chr12 27456673 27456820 -93800710 + B1_Mm SINE Alu 1 147 0 7 794 306 0 0 0 chr12 27456837 27456871 -93800659 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 794 624 127 0 0 chr12 27457650 27457760 -93799770 + (GA)n Simple_repeat Simple_repeat 1 110 0 7 794 274 342 106 65 chr12 27457898 27458173 -93799357 + MLT1C LTR MaLR 109 394 -73 7 794 932 214 33 23 chr12 27458431 27458646 -93798884 - URR1B DNA MER1_type -3 222 6 7 794 497 318 46 28 chr12 27459610 27459892 -93797638 + B4A SINE B4 2 288 -4 7 794 217 294 14 14 chr12 27460063 27460132 -93797398 - ID4_ SINE ID 0 83 15 7 794 225 0 0 0 chr12 27460184 27460209 -93797321 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 794 237 22 0 82 chr12 27460465 27460514 -93797016 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 7 794 1605 214 38 23 chr12 27460651 27461061 -93796469 - MTD LTR MaLR -14 405 1 7 794 244 220 17 0 chr12 27461312 27461371 -93796159 + RLTR19C LTR ERVK 38 97 -409 7 794 922 246 24 5 chr12 27461919 27462127 -93795403 + B3 SINE B2 3 214 -2 7 794 1296 238 30 20 chr12 27462284 27462588 -93794942 + Lx7 LINE L1 6896 7202 -494 7 794 381 154 0 0 chr12 27462588 27462679 -93794851 + CT-rich Low_complexity Low_complexity 2 92 0 7 794 279 0 0 0 chr12 27462680 27462711 -93794819 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 794 561 168 20 0 chr12 27462713 27462814 -93794716 + Lx7 LINE L1 7216 7318 -378 7 794 565 69 23 0 chr12 27462822 27462909 -93794621 + (TG)n Simple_repeat Simple_repeat 1 89 0 7 794 335 298 65 6 chr12 27462919 27463088 -93794442 + Lx7 LINE L1 7514 7692 -4 7 794 372 22 0 0 chr12 27463257 27463302 -93794228 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 794 358 245 219 26 chr12 27463653 27463804 -93793726 - LTR88b LTR Gypsy? -570 267 88 7 794 207 261 14 0 chr12 27465260 27465329 -93792201 + CT-rich Low_complexity Low_complexity 4 73 0 7 794 567 0 0 0 chr12 27465636 27465699 -93791831 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 7 794 372 77 0 0 chr12 27466810 27466862 -93790668 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 794 338 248 8 92 chr12 27468386 27468506 -93789024 + PB1D10 SINE Alu 7 116 -1 7 794 525 16 0 0 chr12 27470764 27470826 -93786704 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 794 315 0 0 0 chr12 27470826 27470860 -93786670 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 794 648 0 0 0 chr12 27470970 27471042 -93786488 + (TTTTG)n Simple_repeat Simple_repeat 5 76 0 7 794 263 332 113 5 chr12 27471422 27471625 -93785905 + Charlie1a DNA MER1_type 230 454 -1001 7 794 811 281 134 79 chr12 27471631 27471960 -93785570 - MTEa LTR MaLR -26 353 7 7 794 442 99 12 24 chr12 27472249 27472332 -93785198 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 7 794 409 315 173 18 chr12 27472333 27472669 -93784861 + Charlie1a DNA MER1_type 660 1047 -408 7 794 382 288 41 70 chr12 27472845 27473017 -93784513 + Lx9 LINE L1 7327 7493 -151 7 794 441 0 0 0 chr12 27473256 27473305 -93784225 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 794 458 309 44 118 chr12 27473762 27474077 -93783453 - B4A SINE B4 0 292 1 7 794 282 188 65 29 chr12 27474926 27475096 -93782434 + (TCTA)n Simple_repeat Simple_repeat 1 176 0 7 794 305 133 0 32 chr12 27475108 27475170 -93782360 + (TCTG)n Simple_repeat Simple_repeat 2 61 0 7 794 188 228 18 0 chr12 27476920 27476977 -93780553 + (CAA)n Simple_repeat Simple_repeat 3 60 0 7 794 323 275 0 0 chr12 27477051 27477120 -93780410 + B3A SINE B2 83 151 -47 7 794 288 0 0 0 chr12 27477154 27477186 -93780344 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 794 836 164 0 21 chr12 27477390 27477533 -93779997 - B1_Mur3 SINE Alu -9 140 1 7 794 2623 87 22 0 chr12 27478105 27478475 -93779055 + L1_Mus3 LINE L1 6261 6638 0 7 794 270 232 0 0 chr12 27479606 27479675 -93777855 + Lx6 LINE L1 7387 7455 -5 7 794 183 42 0 0 chr12 27483728 27483752 -93773778 + (TC)n Simple_repeat Simple_repeat 1 24 0 7 794 243 0 0 0 chr12 27483766 27483793 -93773737 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 794 298 281 15 110 chr12 27485743 27485879 -93771651 + MLT1C LTR MaLR 1 123 -344 7 794 306 235 0 0 chr12 27486489 27486591 -93770939 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 794 574 298 91 40 chr12 27486596 27486872 -93770658 - B4 SINE B4 -1 291 2 7 794 438 234 11 6 chr12 27487084 27487260 -93770270 + (TG)n Simple_repeat Simple_repeat 2 178 0 7 794 396 239 6 12 chr12 27487271 27487436 -93770094 + (TG)n Simple_repeat Simple_repeat 1 164 0 7 794 21 0 0 0 chr12 27488224 27488245 -93769285 + AT_rich Low_complexity Low_complexity 1 21 0 7 794 222 62 0 0 chr12 27488689 27488721 -93768809 + (CCA)n Simple_repeat Simple_repeat 1 32 0 7 794 1949 236 117 70 chr12 27489501 27490427 -93767103 - RMER17B LTR ERVK -9 899 1 7 794 530 118 11 0 chr12 27490563 27490656 -93766874 + (TCCC)n Simple_repeat Simple_repeat 1 94 0 7 794 215 259 35 0 chr12 27492062 27492120 -93765410 + CT-rich Low_complexity Low_complexity 4 63 0 7 794 606 308 98 39 chr12 27492197 27492568 -93764962 + MLT1B LTR MaLR 3 459 -8 7 794 256 161 25 0 chr12 27492976 27493057 -93764473 + (TAGA)n Simple_repeat Simple_repeat 1 83 0 7 794 395 213 29 16 chr12 27493105 27493417 -93764113 + GA-rich Low_complexity Low_complexity 1 316 0 7 794 242 236 164 52 chr12 27493944 27494060 -93763470 + B4A SINE B4 1 129 -163 7 794 257 51 26 0 chr12 27494996 27495035 -93762495 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 794 387 235 126 34 chr12 27495046 27495165 -93762365 - RSINE1 SINE B4 -31 134 5 7 794 200 224 0 17 chr12 27495242 27495301 -93762229 + GA-rich Low_complexity Low_complexity 3 60 0 7 794 196 175 32 0 chr12 27495314 27495377 -93762153 + GA-rich Low_complexity Low_complexity 1 65 0 7 794 493 327 14 45 chr12 27496355 27496576 -93760954 - ID_B1 SINE B4 -9 215 2 7 794 608 315 11 0 chr12 27497914 27498092 -93759438 - B4 SINE B4 -2 290 111 7 794 1203 48 7 0 chr12 27498674 27498819 -93758711 + B1_Mus2 SINE Alu 2 147 0 7 794 234 310 111 14 chr12 27499515 27499659 -93757871 + MIRc SINE MIR 97 254 -14 7 794 192 40 0 0 chr12 27499956 27499981 -93757549 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 794 21 0 0 0 chr12 27500506 27500527 -93757003 + AT_rich Low_complexity Low_complexity 1 21 0 1 794 1103 290 35 17 chr12 27500636 27500980 -93756550 - MER121 Unknown Unknown -9 403 54 2 794 420 20 0 0 chr12 27501506 27501555 -93755975 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 794 273 356 16 63 chr12 27501620 27501746 -93755784 - B4A SINE B4 -128 164 45 4 794 645 248 34 43 chr12 27503680 27503887 -93753643 - B3 SINE B2 0 216 12 5 794 433 230 35 0 chr12 27504499 27504586 -93752944 - RSINE1 SINE B4 -31 134 45 6 794 21 36 0 0 chr12 27504643 27504671 -93752859 + AT_rich Low_complexity Low_complexity 1 28 0 7 794 506 16 16 0 chr12 27504951 27505014 -93752516 + (GA)n Simple_repeat Simple_repeat 2 65 0 8 794 346 300 8 24 chr12 27505583 27505706 -93751824 + CT-rich Low_complexity Low_complexity 4 124 0 9 794 198 0 0 0 chr12 27505709 27505731 -93751799 + (TCCC)n Simple_repeat Simple_repeat 1 22 0 1 794 206 231 0 0 chr12 27505863 27505902 -93751628 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 794 689 246 112 33 chr12 27506536 27506839 -93750691 + L1MB8 LINE L1 5841 6167 -11 1 794 1185 267 48 69 chr12 27506932 27507005 -93750525 - RCHARR1 DNA MER1_type -1 973 916 1 794 258 32 0 0 chr12 27507005 27507036 -93750494 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 794 1214 268 114 43 chr12 27507036 27507838 -93749692 - RCHARR1 DNA MER1_type -59 915 42 1 794 238 276 0 19 chr12 27508296 27508365 -93749165 + CT-rich Low_complexity Low_complexity 42 108 0 1 794 1273 194 161 67 chr12 27508365 27508707 -93748823 + ORR1D1 LTR MaLR 1 374 0 1 794 238 276 0 19 chr12 27508707 27508744 -93748786 + polypyrimidine Low_complexity Low_complexity 5 41 0 1 794 22 0 0 0 chr12 27509003 27509025 -93748505 + AT_rich Low_complexity Low_complexity 1 22 0 1 794 5254 152 20 4 chr12 27509042 27509856 -93747674 - Lx LINE L1 -1 6653 5827 1 794 16659 139 38 8 chr12 27509856 27513768 -93743762 - L1_Mus3 LINE L1 0 6638 1112 2 794 3029 91 36 7 chr12 27513768 27514188 -93743342 - L1_Mus3 LINE L1 -2 6636 6205 2 794 5277 129 30 61 chr12 27514188 27514949 -93742581 - L1_Mus3 LINE L1 -5546 1111 356 2 794 263 384 23 0 chr12 27516130 27516216 -93741314 - B4A SINE B4 -173 119 32 2 794 1236 255 116 9 chr12 27516223 27516552 -93740978 - ORR1D2 LTR MaLR -5 365 2 2 794 1135 58 65 0 chr12 27516607 27516745 -93740785 - B1_Mus2 SINE Alu 0 147 1 2 794 578 290 64 121 chr12 27517138 27517548 -93739982 - MTE2b LTR MaLR -18 401 8 2 794 295 362 0 11 chr12 27518670 27518765 -93738765 - ID_B1 SINE B4 -109 115 22 2 794 2384 256 63 77 chr12 27518943 27519993 -93737537 - RMER17B LTR ERVK -12 896 1 2 794 288 329 58 105 chr12 27520243 27520433 -93737097 + MLT1B LTR MaLR 194 374 -16 2 794 1350 236 53 87 chr12 27520959 27521603 -93735927 + RMER19C LTR ERVK 1 566 -45 2 794 288 175 15 60 chr12 27522006 27522073 -93735457 + RMER19B LTR ERVK 837 900 -2 3 794 330 280 109 35 chr12 27522124 27522298 -93735232 + Lx8 LINE L1 7286 7472 -1 3 794 1080 313 47 47 chr12 27522766 27523209 -93734321 + MT2A LTR ERVL 91 533 0 3 794 255 325 26 13 chr12 27523642 27523720 -93733810 + ID4_ SINE ID 1 79 -4 3 794 278 295 36 62 chr12 27523886 27523998 -93733532 - PB1D7 SINE Alu 0 120 12 3 795 378 42 0 0 chr12 27525352 27525400 -93732130 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 795 576 189 94 0 chr12 27525680 27525786 -93731744 - B3A SINE B2 -80 118 3 3 795 480 280 82 57 chr12 27525873 27526032 -93731498 - B3A SINE B2 -16 182 20 3 795 658 305 41 39 chr12 27526782 27527144 -93730386 - L1M5 LINE L1 -1734 4412 4050 3 795 563 40 14 0 chr12 27527160 27527234 -93730296 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 3 795 281 200 0 26 chr12 27527287 27527364 -93730166 + (TATG)n Simple_repeat Simple_repeat 2 76 0 4 795 201 118 59 0 chr12 27527370 27527421 -93730109 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 795 245 400 44 33 chr12 27528337 27528518 -93729012 - MIRb SINE MIR -64 204 22 4 795 1268 79 0 6 chr12 27528608 27528787 -93728743 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 795 312 342 87 0 chr12 27528819 27528951 -93728579 - HAL1-3A_ME LINE L1 -421 2437 2294 4 795 1286 78 0 6 chr12 27528951 27529132 -93728398 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 795 312 342 87 0 chr12 27529132 27529148 -93728382 - HAL1-3A_ME LINE L1 -565 2293 2277 4 795 325 391 8 0 chr12 27531320 27531448 -93726082 - MLT2B2 LTR ERVL -65 497 369 4 795 298 296 99 79 chr12 27531442 27531644 -93725886 - MLT2B2 LTR ERVL -262 258 53 4 795 379 198 24 41 chr12 27532644 27532813 -93724717 + (TATAA)n Simple_repeat Simple_repeat 1 166 0 4 795 843 238 63 15 chr12 27533475 27533680 -93723850 + B3 SINE B2 1 215 -1 4 795 715 331 74 53 chr12 27533982 27534411 -93723119 + MT2A LTR ERVL 79 547 -7 4 795 408 353 14 14 chr12 27535239 27535377 -93722153 - ORR1E LTR MaLR -221 138 1 5 795 1134 93 0 0 chr12 27536854 27537015 -93720515 + (TTTC)n Simple_repeat Simple_repeat 1 161 0 5 795 353 75 19 0 chr12 27537015 27537068 -93720462 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 5 795 1964 82 12 4 chr12 27537068 27537505 -93720025 - L1_Mus3 LINE L1 0 6638 6367 5 795 207 0 0 0 chr12 27537784 27537807 -93719723 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 795 910 68 7 125 chr12 27537874 27538026 -93719504 + L1_Mus2 LINE L1 6420 6553 -13 5 795 258 81 0 0 chr12 27538026 27538063 -93719467 + (TAA)n Simple_repeat Simple_repeat 3 39 0 5 795 320 0 25 0 chr12 27539346 27539386 -93718144 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 5 795 333 0 0 0 chr12 27539435 27539472 -93718058 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 795 585 0 0 0 chr12 27540612 27540677 -93716853 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 795 669 13 0 0 chr12 27540894 27540972 -93716558 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 795 1521 265 64 27 chr12 27542263 27542667 -93714863 - MTD LTR MaLR 0 419 1 6 795 4305 154 58 37 chr12 27543961 27544872 -93712658 + RLTR25B LTR ERVK 1 1028 0 6 795 279 0 0 0 chr12 27545058 27545089 -93712441 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 795 693 308 82 23 chr12 27545187 27545443 -93712087 - B4A SINE B4 -19 273 3 6 795 227 297 161 21 chr12 27546010 27546103 -93711427 - Tigger5 DNA MER2_type -10 2396 2291 6 795 612 333 29 0 chr12 27546134 27546338 -93711192 - Tigger5 DNA MER2_type -2196 210 1 6 795 1260 263 58 17 chr12 27546461 27546809 -93710721 + ORR1D2 LTR MaLR 1 362 -8 6 795 290 205 0 13 chr12 27547088 27547167 -93710363 + GA-rich Low_complexity Low_complexity 1 78 0 6 795 563 154 47 0 chr12 27548824 27548993 -93708537 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 6 795 273 200 0 0 chr12 27548993 27549053 -93708477 + CT-rich Low_complexity Low_complexity 2 61 0 6 795 335 236 19 62 chr12 27549054 27549311 -93708219 + RMER17D LTR ERVK 277 522 -367 7 795 198 0 0 0 chr12 27549860 27549882 -93707648 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 795 657 0 0 0 chr12 27549882 27549954 -93707576 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 795 180 0 0 0 chr12 27551184 27551204 -93706326 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 795 539 306 26 97 chr12 27551204 27551472 -93706058 - B4 SINE B4 0 292 44 7 795 848 273 15 0 chr12 27551828 27552033 -93705497 - B4 SINE B4 -74 218 11 7 795 399 275 18 18 chr12 27552064 27552175 -93705355 + PB1D10 SINE Alu 2 112 -5 7 795 296 302 43 11 chr12 27553323 27553471 -93704059 - MLT1A1 LTR MaLR 0 408 221 7 795 1122 125 0 0 chr12 27553790 27553966 -93703564 + (TTCTC)n Simple_repeat Simple_repeat 1 176 0 7 795 528 174 0 78 chr12 27553966 27554159 -93703371 + C-rich Low_complexity Low_complexity 1 178 0 7 795 587 282 53 0 chr12 27554183 27554353 -93703177 + Lx8 LINE L1 6515 6693 -780 8 795 759 299 104 0 chr12 27554371 27554639 -93702891 + Lx8 LINE L1 6864 7159 -314 8 795 403 355 0 0 chr12 27554679 27554803 -93702727 + B4 SINE B4 162 285 -7 8 795 1313 158 50 14 chr12 27555269 27555487 -93702043 - URR1A DNA MER1_type 0 226 1 8 795 975 154 6 6 chr12 27556057 27556220 -93701310 - URR1A DNA MER1_type 0 226 64 8 795 268 215 86 25 chr12 27559178 27559259 -93698271 - PB1D10 SINE Alu -22 95 10 8 795 388 304 37 19 chr12 27559540 27559701 -93697829 - RMER15 LTR ERVL -65 510 347 8 795 2666 303 44 18 chr12 27560381 27561374 -93696156 + MTE-int LTR MaLR 90 1108 -472 8 795 455 256 48 57 chr12 27561793 27561917 -93695613 + ID_B1 SINE B4 84 206 -18 8 795 186 319 0 0 chr12 27562281 27562328 -93695202 + L3 LINE CR1 4436 4482 -7 8 795 890 258 70 29 chr12 27564546 27564789 -93692741 + B4 SINE B4 1 253 -39 8 795 414 0 0 0 chr12 27564802 27564848 -93692682 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 795 1298 241 36 36 chr12 27566576 27566933 -93690597 - ORR1D2 LTR MaLR 0 370 14 9 795 844 300 21 12 chr12 27567746 27567989 -93689541 - B4 SINE B4 -5 287 43 9 795 210 208 36 36 chr12 27568429 27568484 -93689046 - B4 SINE B4 -222 70 16 9 795 219 36 0 0 chr12 27569514 27569542 -93687988 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 9 795 21 0 0 0 chr12 27571350 27571371 -93686159 + AT_rich Low_complexity Low_complexity 1 21 0 9 795 207 0 0 0 chr12 27572483 27572506 -93685024 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 795 1158 63 7 0 chr12 27572506 27572648 -93684882 - B1_Mus2 SINE Alu -3 144 2 9 795 1502 172 26 71 chr12 27572675 27573012 -93684518 + ORR1C1 LTR MaLR 1 321 -57 9 795 180 0 0 0 chr12 27573012 27573032 -93684498 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 795 1502 172 26 71 chr12 27573032 27573045 -93684485 + ORR1C1 LTR MaLR 322 334 -44 9 795 570 29 0 0 chr12 27575350 27575418 -93682112 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 795 209 149 0 41 chr12 27575553 27575602 -93681928 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 795 898 271 10 0 chr12 27578481 27578680 -93678850 + B3 SINE B2 3 203 -13 1 795 216 0 0 0 chr12 27578860 27578884 -93678646 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 1 795 1903 246 11 36 chr12 27579369 27579839 -93677691 + Lx6 LINE L1 5834 6273 -1187 1 795 2873 256 147 10 chr12 27579839 27580663 -93676867 + Lx6 LINE L1 6518 7454 -6 1 795 298 253 27 0 chr12 27580786 27580861 -93676669 - Charlie7 DNA MER1_type -365 2247 2171 1 795 183 42 0 0 chr12 27580902 27580926 -93676604 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 795 226 281 153 35 chr12 27581017 27581246 -93676284 + L1MC LINE L1 4562 4817 -1329 1 795 222 62 0 0 chr12 27581260 27581292 -93676238 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 795 247 289 12 12 chr12 27581878 27581962 -93675568 + L1M5 LINE L1 5613 5696 -748 1 795 243 301 81 8 chr12 27582969 27583093 -93674437 + MER45A DNA Tip100 46 178 0 1 795 434 126 31 8 chr12 27584491 27584529 -93673001 + T-rich Low_complexity Low_complexity 96 132 0 1 795 912 95 6 140 chr12 27584529 27584700 -93672830 - B1_Mus1 SINE Alu 0 148 1 1 795 434 126 31 8 chr12 27584700 27584789 -93672741 + T-rich Low_complexity Low_complexity 3 95 0 1 795 623 284 47 10 chr12 27585193 27585440 -93672090 + MTE2b LTR MaLR 1 271 -108 1 795 23 0 0 0 chr12 27586361 27586384 -93671146 + AT_rich Low_complexity Low_complexity 1 23 0 1 795 1277 271 51 31 chr12 27586515 27587126 -93670404 - L1MC1 LINE L1 -30 6314 5679 1 795 192 152 0 0 chr12 27589337 27589370 -93668160 + (CAT)n Simple_repeat Simple_repeat 2 34 0 1 795 459 0 0 0 chr12 27591471 27591522 -93666008 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 795 783 248 29 5 chr12 27593139 27593346 -93664184 - B3 SINE B2 0 216 5 1 795 563 292 62 68 chr12 27593918 27594219 -93663311 - MTD LTR MaLR -4 355 18 1 795 314 316 109 40 chr12 27594379 27594653 -93662877 + HAL1 LINE L1 1170 1462 -1045 1 795 270 125 0 0 chr12 27594730 27594778 -93662752 + (ATG)n Simple_repeat Simple_repeat 2 49 0 1 795 3541 30 0 0 chr12 27594818 27595214 -93662316 - MTA_Mm LTR MaLR 0 396 1 1 795 3353 110 12 4 chr12 27595318 27595820 -93661710 + L1_Mus4 LINE L1 6131 6636 0 1 795 1002 127 0 0 chr12 27595826 27595984 -93661546 + (GGAA)n Simple_repeat Simple_repeat 3 160 0 1 795 1355 55 0 11 chr12 27595984 27596166 -93661364 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 795 777 82 0 0 chr12 27596189 27596299 -93661231 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 1 795 31413 101 15 6 chr12 27596490 27601946 -93655584 - L1_Mus1 LINE L1 0 6567 1066 1 795 6502 59 14 0 chr12 27601946 27602743 -93654787 + RLTR13C2 LTR ERVK 1 808 0 1 795 5259 154 86 23 chr12 27602743 27603593 -93653937 - L1_Mus1 LINE L1 -5551 1065 145 1 795 1000 275 14 18 chr12 27603823 27604108 -93653422 - B4A SINE B4 -8 284 1 1 795 449 268 94 90 chr12 27604356 27604590 -93652940 + MTE2a LTR MaLR 63 297 -82 1 795 712 174 0 13 chr12 27604622 27604779 -93652751 + GA-rich Low_complexity Low_complexity 2 156 0 1 795 788 69 205 8 chr12 27605024 27605141 -93652389 + B1_Mus1 SINE Alu 1 140 -8 1 795 181 351 146 10 chr12 27605519 27605916 -93651614 - L2 LINE L2 -1005 2414 1964 1 795 2281 138 141 29 chr12 27607190 27607608 -93649922 + RMER4A LTR ERVK 2 466 0 1 795 448 346 78 6 chr12 27607834 27608014 -93649516 + B4 SINE B4 8 200 -92 1 795 468 346 17 11 chr12 27609728 27609909 -93647621 + B3A SINE B2 1 182 -16 1 795 3562 20 2 0 chr12 27610304 27610708 -93646822 - L1Md_F2 LINE L1 -1 6581 6177 1 795 786 53 0 0 chr12 27610708 27610802 -93646728 + L1Md_F2 LINE L1 6072 6165 -417 1 795 22 35 0 0 chr12 27611326 27611355 -93646175 + AT_rich Low_complexity Low_complexity 1 29 0 1 795 594 305 0 13 chr12 27611584 27611737 -93645793 + RSINE1 SINE B4 1 151 -14 1 795 976 218 168 7 chr12 27612364 27612655 -93644875 + ORR1D2 LTR MaLR 33 370 0 1 795 2204 147 4 138 chr12 27612932 27613382 -93644148 - ORR1B1 LTR MaLR 0 394 5 1 795 450 0 0 0 chr12 27614954 27615004 -93642526 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 795 201 272 40 3 chr12 27616024 27616089 -93641441 - MIRb SINE MIR -181 87 14 1 795 293 239 8 84 chr12 27616306 27616425 -93641105 + BC1_Mm scRNA scRNA 5 114 -38 1 795 21 0 0 0 chr12 27616521 27616542 -93640988 + AT_rich Low_complexity Low_complexity 1 21 0 1 795 324 318 36 0 chr12 27616826 27616936 -93640594 - Tigger7 DNA MER2_type -2373 118 5 1 795 689 312 115 31 chr12 27617404 27617761 -93639769 + MTD LTR MaLR 19 405 -14 1 795 210 200 0 98 chr12 27618025 27618086 -93639444 + ID4_ SINE ID 10 64 -19 1 795 233 182 18 0 chr12 27618096 27618151 -93639379 + GA-rich Low_complexity Low_complexity 2 57 0 1 795 201 39 0 0 chr12 27618679 27618705 -93638825 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 795 291 54 0 0 chr12 27618844 27618881 -93638649 + (CACCAT)n Simple_repeat Simple_repeat 4 40 0 1 795 259 258 108 8 chr12 27618894 27619023 -93638507 - L1MA6 LINE L1 -380 5920 5779 1 795 208 216 39 0 chr12 27619063 27619114 -93638416 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 1 795 564 15 0 0 chr12 27619117 27619182 -93638348 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 1 795 688 163 0 16 chr12 27620834 27620959 -93636571 - MTC LTR MaLR -8 413 291 1 795 554 297 12 0 chr12 27620989 27621154 -93636376 + B3A SINE B2 4 170 -28 1 795 948 84 0 0 chr12 27621162 27621293 -93636237 + (GA)n Simple_repeat Simple_repeat 2 132 0 1 795 585 0 0 0 chr12 27621945 27622010 -93635520 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 795 342 0 0 0 chr12 27622418 27622456 -93635074 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 795 201 121 0 0 chr12 27623243 27623276 -93634254 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 1 795 343 84 56 0 chr12 27623282 27623353 -93634177 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 1 795 332 304 127 44 chr12 27623847 27624328 -93633202 - L1MB5 LINE L1 -25 6149 5629 1 795 541 277 50 69 chr12 27624393 27624595 -93632935 - B3A SINE B2 -13 203 6 1 795 28 29 0 0 chr12 27624687 27624722 -93632808 + AT_rich Low_complexity Low_complexity 1 35 0 1 795 333 307 43 38 chr12 27624817 27625027 -93632503 - L1MB5 LINE L1 -1306 4840 4630 1 795 355 258 0 58 chr12 27625148 27625251 -93632279 + B1F SINE Alu 44 140 -9 1 795 1547 279 83 48 chr12 27626041 27626681 -93630849 + Lx8 LINE L1 6812 7473 0 1 795 562 280 270 30 chr12 27626685 27627054 -93630476 + L1M2 LINE L1 5405 5861 -439 1 795 968 127 30 0 chr12 27627211 27627377 -93630153 + URR1A DNA MER1_type 56 226 0 1 795 23 0 0 0 chr12 27627989 27628012 -93629518 + AT_rich Low_complexity Low_complexity 1 23 0 1 795 274 298 79 7 chr12 27628034 27628186 -93629344 + L1MA9 LINE L1 2178 2340 -3803 1 795 584 62 0 0 chr12 27628186 27628258 -93629272 + BC1_Mm scRNA scRNA 3 74 -78 1 795 531 0 0 0 chr12 27628258 27628317 -93629213 + (GAAAA)n Simple_repeat Simple_repeat 1 59 0 1 795 1132 304 114 41 chr12 27628428 27629419 -93628111 + L1MA9 LINE L1 2461 3523 -2620 1 795 589 286 67 77 chr12 27629591 27630057 -93627473 + L1MA9 LINE L1 3548 4008 -2135 1 795 450 0 0 0 chr12 27630072 27630122 -93627408 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 795 243 226 47 12 chr12 27630160 27630245 -93627285 + L1MA9 LINE L1 4971 5058 -1085 1 795 231 372 18 3 chr12 27630245 27630451 -93627079 + GA-rich Low_complexity Low_complexity 1 208 0 1 795 603 276 19 58 chr12 27630466 27630727 -93626803 + L1MA9 LINE L1 5040 5290 -853 1 795 489 287 37 58 chr12 27630823 27631083 -93626447 + L1MA9 LINE L1 5447 5703 -468 1 795 396 159 36 43 chr12 27631083 27631221 -93626309 + (CATATA)n Simple_repeat Simple_repeat 5 141 0 1 795 612 179 7 46 chr12 27631241 27631393 -93626137 - L1Md_A LINE L1 0 6582 6437 1 795 1336 233 100 3 chr12 27631432 27631793 -93625737 + MTD LTR MaLR 1 396 -23 1 795 263 315 8 25 chr12 27631828 27631988 -93625542 + L1MA9 LINE L1 5769 5929 -374 1 795 21 0 0 0 chr12 27632312 27632333 -93625197 + AT_rich Low_complexity Low_complexity 1 21 0 1 795 415 327 36 96 chr12 27632426 27632791 -93624739 - MLT1D LTR MaLR 0 505 163 1 795 1529 222 16 22 chr12 27632851 27633214 -93624316 - ORR1D1 LTR MaLR -13 361 1 1 795 3488 28 5 0 chr12 27633292 27633686 -93623844 - MTA_Mm LTR MaLR 0 396 1 1 795 870 274 60 108 chr12 27634808 27634887 -93622643 + MTE2b LTR MaLR 10 76 -303 1 795 387 0 0 0 chr12 27634887 27634930 -93622600 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 795 315 0 0 0 chr12 27634930 27634964 -93622566 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 795 870 274 60 108 chr12 27634964 27635188 -93622342 + MTE2b LTR MaLR 77 307 -72 1 795 4516 118 10 19 chr12 27635188 27635886 -93621644 + Lx2 LINE L1 6306 6997 0 1 795 870 274 60 108 chr12 27635886 27635960 -93621570 + MTE2b LTR MaLR 308 370 -9 1 795 321 26 0 0 chr12 27636726 27636764 -93620766 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 795 282 125 0 0 chr12 27637236 27637284 -93620246 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 795 34 42 0 0 chr12 27637313 27637361 -93620169 + AT_rich Low_complexity Low_complexity 1 48 0 1 795 702 143 0 0 chr12 27637968 27638087 -93619443 + (TC)n Simple_repeat Simple_repeat 2 120 0 1 795 507 325 80 4 chr12 27638306 27638544 -93618986 + B4 SINE B4 37 292 0 1 795 342 61 0 0 chr12 27638615 27638664 -93618866 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 1 795 1615 168 25 19 chr12 27638782 27639103 -93618427 - MTC LTR MaLR 0 421 99 1 795 195 327 29 0 chr12 27639382 27639486 -93618044 + L3b LINE CR1 24 130 -352 1 795 3441 50 35 5 chr12 27639811 27640234 -93617296 + RLTR10C LTR ERVK 1 436 0 1 795 21 36 0 0 chr12 27640328 27640356 -93617174 + AT_rich Low_complexity Low_complexity 1 28 0 1 795 33724 73 3 0 chr12 27640516 27645794 -93611736 + L1Md_F2 LINE L1 296 5586 -297 1 795 8264 43 1 2 chr12 27645795 27646785 -93610745 + L1Md_F2 LINE L1 5588 6576 -6 1 795 837 273 143 10 chr12 27646796 27647096 -93610434 - MTD LTR MaLR -44 375 36 1 795 1141 183 9 40 chr12 27647308 27647530 -93610000 + B3 SINE B2 2 216 0 1 795 200 227 0 0 chr12 27647603 27647647 -93609883 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 795 287 271 47 39 chr12 27647789 27647916 -93609614 - MLT1A1 LTR MaLR 0 408 281 2 795 25 0 0 0 chr12 27647927 27647952 -93609578 + AT_rich Low_complexity Low_complexity 1 25 0 2 795 238 305 83 8 chr12 27650669 27650801 -93606729 + MIRb SINE MIR 127 268 0 2 795 387 244 25 34 chr12 27651110 27651229 -93606301 - MLT1A1 LTR MaLR 0 408 291 2 795 293 328 149 34 chr12 27652792 27653000 -93604530 - B4 SINE B4 -27 265 34 2 795 279 348 87 14 chr12 27653281 27653488 -93604042 + MLT1A0 LTR MaLR 25 246 -119 2 795 1158 48 0 14 chr12 27655587 27655734 -93601796 - B1_Mus1 SINE Alu -2 146 2 2 99 960 166 193 0 chr12 27656091 27656272 -93601258 + B3 SINE B2 1 216 0 2 796 351 0 0 0 chr12 27656937 27656976 -93600554 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 796 233 0 62 0 chr12 27658393 27658425 -93599105 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2 796 737 260 127 141 chr12 27658727 27659090 -93598440 - MTD LTR MaLR -21 358 1 2 796 21 57 0 0 chr12 27659264 27659299 -93598231 + AT_rich Low_complexity Low_complexity 1 35 0 2 796 699 92 0 0 chr12 27659412 27659521 -93598009 + (CA)n Simple_repeat Simple_repeat 2 110 0 2 796 1211 122 16 5 chr12 27659739 27659928 -93597602 + B2_Mm2 SINE B2 4 194 -1 2 796 254 247 40 20 chr12 27660159 27660258 -93597272 + CT-rich Low_complexity Low_complexity 5 105 0 2 796 915 277 42 11 chr12 27661965 27662228 -93595302 + B4 SINE B4 3 273 -19 2 796 1725 117 11 14 chr12 27662641 27662927 -93594603 + L1_Mus3 LINE L1 6354 6638 0 2 796 1616 281 128 12 chr12 27663263 27663857 -93593673 + Lx8 LINE L1 6454 7116 -357 2 796 3889 172 84 24 chr12 27663857 27664675 -93592855 + RMER19B LTR ERVK 1 867 -35 2 796 741 250 13 0 chr12 27664682 27664838 -93592692 + Lx8 LINE L1 7102 7259 -214 2 796 3214 58 0 10 chr12 27665292 27665696 -93591834 - MTB LTR MaLR 0 400 1 2 796 1175 290 20 0 chr12 27665701 27665998 -93591532 + MTEa LTR MaLR 10 312 -67 2 796 825 241 44 40 chr12 27666022 27666273 -93591257 + Lx2B LINE L1 6730 6981 -19 2 796 1237 223 54 106 chr12 27666945 27667339 -93590191 - MTE2a LTR MaLR 0 421 5 2 796 356 268 0 0 chr12 27667971 27668053 -93589477 - MTEb LTR MaLR -8 371 290 2 796 292 281 0 19 chr12 27668270 27668375 -93589155 - L1MA4 LINE L1 -396 5904 5802 2 796 211 204 74 22 chr12 27668375 27668510 -93589020 + (TA)n Simple_repeat Simple_repeat 2 143 0 2 796 4072 154 96 31 chr12 27668672 27669550 -93587980 + L1VL1 LINE L1 194 1128 -5294 2 796 17609 109 35 1 chr12 27669549 27673023 -93584507 + L1_Mus3 LINE L1 3032 6626 -12 2 796 260 325 86 0 chr12 27673036 27673199 -93584331 + L1M1 LINE L1 5722 5898 -402 2 796 459 0 0 0 chr12 27673200 27673251 -93584279 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 796 399 202 0 0 chr12 27673384 27673468 -93584062 + (TA)n Simple_repeat Simple_repeat 1 84 0 2 796 724 298 13 2 chr12 27673468 27673657 -93583873 - B3A SINE B2 -13 203 14 2 796 456 19 0 0 chr12 27674521 27674574 -93582956 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 796 501 239 17 26 chr12 27674609 27674725 -93582805 - B3A SINE B2 -78 120 6 2 796 243 0 0 0 chr12 27674736 27674763 -93582767 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 796 617 0 14 0 chr12 27674765 27674838 -93582692 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 796 400 268 41 0 chr12 27675208 27675305 -93582225 + ORR1E LTR MaLR 5 105 -265 2 796 1055 208 39 5 chr12 27675307 27675510 -93582020 - MTD LTR MaLR -14 405 196 2 796 2717 62 62 0 chr12 27675521 27675879 -93581651 - L1_Mus1 LINE L1 0 6567 6188 2 796 2018 70 0 0 chr12 27675879 27676149 -93581381 + L1_Mus1 LINE L1 5919 6188 -379 2 796 821 231 10 53 chr12 27676149 27676355 -93581175 - MTD LTR MaLR -212 209 13 2 796 902 299 4 68 chr12 27676361 27676641 -93580889 + ORR1E LTR MaLR 98 359 0 2 796 422 214 41 18 chr12 27679220 27679391 -93578139 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 2 796 432 141 23 47 chr12 27679423 27679594 -93577936 + (TA)n Simple_repeat Simple_repeat 1 167 0 2 796 285 157 32 40 chr12 27679667 27679793 -93577737 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 2 796 225 83 0 0 chr12 27681404 27681440 -93576090 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 796 210 118 0 0 chr12 27681440 27681474 -93576056 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 796 1428 215 48 64 chr12 27681886 27682263 -93575267 + ORR1C2 LTR MaLR 1 371 -13 2 796 724 75 0 96 chr12 27682892 27683019 -93574511 - L1_Mus1 LINE L1 -146 6421 6313 2 796 681 102 17 8 chr12 27683019 27683138 -93574392 + L1_Mus1 LINE L1 6447 6566 -1 2 796 28 0 0 0 chr12 27683146 27683174 -93574356 + AT_rich Low_complexity Low_complexity 1 28 0 2 796 432 322 101 0 chr12 27683180 27683329 -93574201 + B4 SINE B4 125 288 -4 2 796 852 63 0 0 chr12 27683372 27683483 -93574047 + (GA)n Simple_repeat Simple_repeat 2 112 0 2 796 326 123 0 30 chr12 27683706 27683773 -93573757 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 2 796 319 254 63 56 chr12 27684299 27684441 -93573089 - MLT1B LTR MaLR -36 431 289 2 796 431 339 83 54 chr12 27684453 27684693 -93572837 - MLT1B LTR MaLR -141 249 3 2 796 534 16 0 0 chr12 27685668 27685731 -93571799 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 796 201 74 0 0 chr12 27685847 27685874 -93571656 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2 796 646 317 68 85 chr12 27686731 27687083 -93570447 - MTE2a LTR MaLR -10 369 24 2 796 432 349 86 9 chr12 27687654 27687874 -93569656 - MT2A LTR ERVL -296 237 1 2 796 368 272 97 11 chr12 27688215 27688390 -93569140 - B3A SINE B2 -8 190 1 2 796 232 164 0 0 chr12 27688605 27688660 -93568870 - Lx8 LINE L1 -2 7471 7417 2 796 383 304 76 63 chr12 27688663 27688965 -93568565 - Charlie7 DNA MER1_type -586 2026 1721 2 796 298 365 77 11 chr12 27689014 27689197 -93568333 - Charlie7 DNA MER1_type -2083 529 335 2 796 889 272 73 71 chr12 27690376 27690547 -93566983 + ORR1E LTR MaLR 1 164 -195 2 796 558 262 0 26 chr12 27690547 27690700 -93566830 - B1_Mur2 SINE Alu 0 149 1 2 796 889 272 73 71 chr12 27690700 27690868 -93566662 + ORR1E LTR MaLR 165 341 -18 2 796 603 0 0 0 chr12 27691390 27691457 -93566073 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 796 189 275 5 33 chr12 27691482 27691666 -93565864 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 796 229 219 228 0 chr12 27692000 27692114 -93565416 + MLT1H LTR MaLR 302 441 -108 2 796 625 224 124 11 chr12 27692153 27692338 -93565192 - B3 SINE B2 -10 206 1 2 796 269 345 113 81 chr12 27692346 27692728 -93564802 - MLT1A1 LTR MaLR -12 396 3 2 796 998 282 107 18 chr12 27693224 27693560 -93563970 + MTE2b LTR MaLR 1 366 -13 2 796 345 330 79 37 chr12 27693867 27694081 -93563449 + L1MEd LINE L1 920 1142 -4977 2 796 292 281 123 7 chr12 27694373 27694527 -93563003 + L1M5 LINE L1 5564 5735 -444 2 796 464 48 0 16 chr12 27694671 27694735 -93562795 + (TATG)n Simple_repeat Simple_repeat 2 64 0 2 796 407 282 173 28 chr12 27694805 27695053 -93562477 - B4A SINE B4 -8 284 1 2 796 26 30 0 0 chr12 27695577 27695610 -93561920 + AT_rich Low_complexity Low_complexity 1 33 0 2 796 308 291 94 50 chr12 27695684 27695865 -93561665 - L1MC LINE L1 -839 5307 5119 2 796 245 220 51 0 chr12 27696054 27696113 -93561417 + MTE2b LTR MaLR 1 62 -317 2 796 468 0 0 0 chr12 27696471 27696523 -93561007 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 796 22 35 0 0 chr12 27697708 27697737 -93559793 + AT_rich Low_complexity Low_complexity 1 29 0 2 796 186 43 0 0 chr12 27698082 27698105 -93559425 + (CAGAGA)n Simple_repeat Simple_repeat 5 27 0 2 796 10212 155 30 39 chr12 27698206 27699648 -93557882 + Lx4B LINE L1 3836 5281 -596 2 796 1174 62 14 0 chr12 27699648 27699794 -93557736 + B1_Mus1 SINE Alu 1 148 0 2 796 10212 175 34 17 chr12 27699794 27701337 -93556193 + Lx4B LINE L1 5282 6759 -299 2 796 409 288 0 35 chr12 27701345 27701460 -93556070 + MTE2b LTR MaLR 258 368 -11 2 796 198 0 0 0 chr12 27701747 27701769 -93555761 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2 796 213 364 18 18 chr12 27701906 27702018 -93555512 - PB1D7 SINE Alu -8 112 1 2 796 202 312 26 0 chr12 27702388 27702465 -93555065 + CT-rich Low_complexity Low_complexity 3 81 0 2 796 379 246 93 63 chr12 27703790 27704059 -93553471 - L1MA4 LINE L1 -1 6290 6014 2 796 297 209 0 0 chr12 27704136 27704203 -93553327 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 796 1159 251 26 63 chr12 27705604 27705984 -93551546 + MTE2a LTR MaLR 6 375 -44 2 796 285 98 0 0 chr12 27706029 27706070 -93551460 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2 796 773 298 67 70 chr12 27706327 27706814 -93550716 - L1MA4 LINE L1 -275 6022 5519 2 796 1201 71 0 17 chr12 27706814 27706987 -93550543 - L1_Mus1 LINE L1 0 6567 6398 2 796 773 295 63 70 chr12 27706987 27707208 -93550322 - L1MA4 LINE L1 -782 5518 5304 2 796 649 309 111 11 chr12 27707251 27707772 -93549758 - L1MA4 LINE L1 -887 5256 4684 2 796 299 336 96 4 chr12 27708137 27708418 -93549112 - L1MA4 LINE L1 -1811 4329 4023 2 796 369 43 0 0 chr12 27709249 27709296 -93548234 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 796 507 107 0 0 chr12 27709414 27709489 -93548041 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 796 306 396 31 0 chr12 27709730 27709889 -93547641 + L1M4c LINE L1 1598 1761 -4623 2 796 897 293 78 80 chr12 27709992 27710371 -93547159 + L1M4c LINE L1 2364 2705 -3674 2 796 588 264 28 71 chr12 27710371 27710583 -93546947 - B3 SINE B2 -9 207 5 2 796 897 293 78 80 chr12 27710583 27710724 -93546806 + L1M4c LINE L1 2706 2836 -3543 2 796 369 62 0 0 chr12 27710724 27710772 -93546758 + (CAA)n Simple_repeat Simple_repeat 1 48 0 2 796 897 293 78 80 chr12 27710772 27711410 -93546120 + L1M4c LINE L1 2837 3520 -2859 2 796 846 234 28 38 chr12 27711777 27711990 -93545540 - B3 SINE B2 -5 211 1 2 796 678 323 32 5 chr12 27712343 27712533 -93544997 + B3A SINE B2 4 198 0 2 796 315 146 0 0 chr12 27713462 27713517 -93544013 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 2 796 4142 84 0 3 chr12 27713999 27714582 -93542948 - L1_Mm LINE L1 -2 5881 5301 2 796 1537 74 0 0 chr12 27714585 27714787 -93542743 + L1_Mus1 LINE L1 6366 6567 0 2 796 180 0 0 0 chr12 27715528 27715548 -93541982 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2 796 438 283 151 5 chr12 27715732 27715924 -93541606 - ID_B1 SINE B4 -4 220 1 2 796 182 211 18 55 chr12 27716060 27716115 -93541415 + MIR3 SINE MIR 15 67 -141 2 796 2752 255 108 91 chr12 27717968 27718109 -93539421 - RLTR25A LTR ERVK -2 1026 825 2 796 225 0 0 0 chr12 27718109 27718134 -93539396 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 796 2958 155 120 64 chr12 27718134 27718795 -93538735 - RLTR25A LTR ERVK -204 824 150 2 796 504 0 0 0 chr12 27718795 27718851 -93538679 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 796 2958 148 112 48 chr12 27718851 27718981 -93538549 - RLTR25A LTR ERVK -954 149 2 2 796 861 275 15 49 chr12 27719308 27719368 -93538162 - ORR1E LTR MaLR -104 255 205 3 796 225 0 0 0 chr12 27719368 27719393 -93538137 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 796 861 275 15 49 chr12 27719393 27719596 -93537934 - ORR1E LTR MaLR -155 204 1 3 796 227 299 84 110 chr12 27719596 27719735 -93537795 + ORR1D2 LTR MaLR 57 191 -179 3 796 505 280 60 7 chr12 27720637 27720788 -93536742 + RSINE1 SINE B4 3 161 -4 3 796 573 15 0 0 chr12 27720855 27720921 -93536609 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 796 354 108 0 0 chr12 27721423 27721488 -93536042 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 3 796 384 22 0 0 chr12 27721490 27721535 -93535995 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 796 216 0 0 0 chr12 27723760 27723784 -93533746 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 3 796 603 299 23 124 chr12 27724478 27724784 -93532746 - B4 SINE B4 -8 284 10 3 796 25 0 0 0 chr12 27725049 27725074 -93532456 + AT_rich Low_complexity Low_complexity 1 25 0 3 796 258 304 0 73 chr12 27725738 27725862 -93531668 - HAL1b LINE L1 -838 1171 1057 3 796 212 167 21 0 chr12 27725917 27725965 -93531565 + CT-rich Low_complexity Low_complexity 2 50 0 3 796 294 29 0 0 chr12 27726548 27726583 -93530947 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 796 268 266 149 0 chr12 27727290 27727466 -93530064 - MLT2B4 LTR ERVL -340 214 1 3 796 186 43 0 0 chr12 27727499 27727522 -93530008 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 3 796 404 317 153 0 chr12 27727522 27727705 -93529825 - ID_B1 SINE B4 -12 212 2 3 796 2149 260 31 13 chr12 27727715 27728325 -93529205 - Lx6 LINE L1 -2 7458 6459 3 796 1250 146 13 35 chr12 27729589 27729817 -93527713 - URR1B DNA MER1_type -1 224 2 3 796 732 276 30 0 chr12 27730551 27730754 -93526776 + ID_B1 SINE B4 8 216 -8 3 796 306 0 0 0 chr12 27731093 27731127 -93526403 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 796 394 308 208 6 chr12 27731472 27731655 -93525875 - ID_B1 SINE B4 -4 220 1 3 796 525 58 0 0 chr12 27733033 27733102 -93524428 + (TCTG)n Simple_repeat Simple_repeat 4 72 0 3 796 513 247 52 99 chr12 27733349 27733560 -93523970 + MTEa LTR MaLR 179 379 0 3 796 225 65 0 0 chr12 27734773 27734804 -93522726 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 796 23 0 0 0 chr12 27735711 27735734 -93521796 + AT_rich Low_complexity Low_complexity 1 23 0 3 796 416 304 74 34 chr12 27736613 27736909 -93520621 + L1MB1 LINE L1 5709 6016 -173 3 796 2371 125 51 31 chr12 27737357 27737770 -93519760 - MTC LTR MaLR 0 421 1 3 796 265 24 23 23 chr12 27738592 27738635 -93518895 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 796 731 257 53 24 chr12 27738802 27739009 -93518521 - B4 SINE B4 -77 215 3 3 796 449 110 14 0 chr12 27740214 27740287 -93517243 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 796 767 102 8 0 chr12 27741945 27742073 -93515457 + (GA)n Simple_repeat Simple_repeat 2 130 0 3 796 202 214 0 67 chr12 27742706 27742766 -93514764 + GA-rich Low_complexity Low_complexity 2 57 0 3 796 261 57 0 0 chr12 27742766 27742801 -93514729 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 796 415 291 32 0 chr12 27743831 27743938 -93513592 - B1F1 SINE Alu -8 112 3 3 796 180 0 0 0 chr12 27743957 27743977 -93513553 + (TTG)n Simple_repeat Simple_repeat 1 20 0 3 796 27 0 0 0 chr12 27744754 27744781 -93512749 + AT_rich Low_complexity Low_complexity 1 27 0 3 796 271 278 134 37 chr12 27749291 27749508 -93508022 - RMER12 LTR ERVK -335 987 750 3 796 612 0 0 0 chr12 27750479 27750547 -93506983 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 796 578 313 15 54 chr12 27750613 27750873 -93506657 - B4 SINE B4 -35 257 8 3 796 713 135 8 0 chr12 27751310 27751436 -93506094 + (TTCC)n Simple_repeat Simple_repeat 3 129 0 3 796 514 272 148 16 chr12 27751449 27751632 -93505898 - ID_B1 SINE B4 -1 223 17 3 796 246 268 35 47 chr12 27752404 27752490 -93505040 + PB1 SINE Alu 24 108 -19 3 796 557 308 30 59 chr12 27752870 27753039 -93504491 + RSINE1 SINE B4 2 165 0 3 796 325 282 127 51 chr12 27753118 27753275 -93504255 + B3A SINE B2 48 216 0 3 796 390 274 26 33 chr12 27754407 27754558 -93502972 + ID_B1 SINE B4 73 222 -2 3 796 508 225 109 0 chr12 27755219 27755357 -93502173 - Lx8 LINE L1 -348 7125 6973 3 796 637 79 10 10 chr12 27755361 27755463 -93502067 + (GAAA)n Simple_repeat Simple_repeat 4 105 0 3 796 465 184 9 17 chr12 27755437 27755553 -93501977 + GA-rich Low_complexity Low_complexity 3 117 0 3 796 202 42 0 0 chr12 27755553 27755577 -93501953 + (GGAGA)n Simple_repeat Simple_repeat 5 28 0 3 796 453 253 0 0 chr12 27755588 27755679 -93501851 + PB1D10 SINE Alu 12 102 -15 3 796 835 278 14 0 chr12 27756916 27757128 -93500402 + MTE2b LTR MaLR 1 215 -164 3 796 183 100 0 0 chr12 27758059 27758089 -93499441 + (AAGTG)n Simple_repeat Simple_repeat 3 32 0 3 796 1510 64 16 0 chr12 27758543 27758731 -93498799 + B2_Mm2 SINE B2 1 191 -4 3 796 911 281 91 26 chr12 27759072 27759422 -93498108 - MTEa LTR MaLR -4 375 3 3 796 477 0 0 0 chr12 27759521 27759574 -93497956 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 796 750 248 70 31 chr12 27759713 27759942 -93497588 - MTE2a LTR MaLR -141 238 1 3 796 445 264 34 6 chr12 27760031 27760206 -93497324 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 796 433 260 5 58 chr12 27760255 27760443 -93497087 + (TATG)n Simple_repeat Simple_repeat 1 178 0 3 796 270 206 0 0 chr12 27760451 27760524 -93497006 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 796 556 297 64 32 chr12 27760527 27760746 -93496784 - B4 SINE B4 0 292 67 3 796 189 0 0 0 chr12 27761321 27761342 -93496188 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3 796 218 318 0 0 chr12 27762381 27762447 -93495083 - MIR SINE MIR -107 155 90 3 796 690 300 11 4 chr12 27762559 27762833 -93494697 + L1MA9 LINE L1 4908 5183 -957 3 796 278 260 0 0 chr12 27762962 27763039 -93494491 + L1MA9 LINE L1 5417 5493 -678 3 796 9640 132 6 10 chr12 27763034 27764494 -93493036 + Lx4A LINE L1 5602 7056 -2 3 796 637 294 86 47 chr12 27764507 27764996 -93492534 + L1MA9 LINE L1 5476 5983 -329 3 796 183 114 0 0 chr12 27765414 27765449 -93492081 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 796 792 239 21 11 chr12 27765519 27765709 -93491821 - B3 SINE B2 -7 209 18 3 796 419 276 0 0 chr12 27766539 27766637 -93490893 - B1F1 SINE Alu -51 98 1 3 796 597 14 0 0 chr12 27766700 27766770 -93490760 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 796 1049 37 0 7 chr12 27768370 27768505 -93489025 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 3 796 349 282 132 13 chr12 27769030 27769181 -93488349 + B4 SINE B4 60 228 -64 3 796 227 297 234 0 chr12 27769179 27769290 -93488240 + B3A SINE B2 12 148 -50 3 796 585 0 0 0 chr12 27769307 27769372 -93488158 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 796 261 0 0 0 chr12 27770483 27770512 -93487018 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 3 796 848 61 0 9 chr12 27771252 27771368 -93486162 + (TTTC)n Simple_repeat Simple_repeat 3 117 0 3 796 342 297 0 99 chr12 27771431 27771562 -93485968 - RSINE1 SINE B4 0 165 48 3 796 245 19 74 37 chr12 27772499 27772553 -93484977 + (TTTTTG)n Simple_repeat Simple_repeat 6 61 0 3 796 275 286 171 43 chr12 27772569 27772686 -93484844 + B1F1 SINE Alu 3 134 -15 3 796 1095 291 37 11 chr12 27773019 27773367 -93484163 + ORR1E LTR MaLR 3 359 0 3 796 181 333 102 8 chr12 27774425 27774543 -93482987 + MIRb SINE MIR 26 154 -114 3 796 443 320 8 8 chr12 27775353 27775482 -93482048 - RSINE1 SINE B4 -35 130 2 3 796 495 169 12 0 chr12 27775805 27775888 -93481642 + RSINE1 SINE B4 21 104 -61 3 796 396 59 0 0 chr12 27775901 27775952 -93481578 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 796 317 22 44 0 chr12 27775954 27775999 -93481531 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 3 796 2761 291 61 41 chr12 27778239 27779242 -93478288 - Lx8 LINE L1 -32 7441 6419 3 796 2706 172 41 10 chr12 27779451 27779962 -93477568 - RLTR11A2 LTR ERVK 0 527 1 3 796 208 164 0 47 chr12 27780749 27780813 -93476717 + G-rich Low_complexity Low_complexity 5 65 0 3 796 431 241 62 98 chr12 27782043 27782079 -93475451 - B2_Mm2 SINE B2 -6 189 158 3 796 378 115 0 0 chr12 27782079 27782140 -93475390 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 796 672 236 37 8 chr12 27782140 27782296 -93475234 - B3A SINE B2 -38 157 4 3 796 774 164 9 6 chr12 27784454 27784773 -93472757 + GA-rich Low_complexity Low_complexity 1 320 0 3 796 3409 267 68 7 chr12 27784790 27785402 -93472128 + Lx7 LINE L1 6325 6990 -706 3 796 255 41 40 20 chr12 27785402 27785452 -93472078 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 796 3409 267 68 7 chr12 27785452 27785779 -93471751 + Lx7 LINE L1 6991 7320 -376 3 796 264 265 98 41 chr12 27785885 27786007 -93471523 + Lx6 LINE L1 7320 7448 -12 3 796 299 324 0 0 chr12 27786116 27786190 -93471340 + Lx7 LINE L1 6537 6610 -1086 3 796 350 272 69 17 chr12 27786321 27786437 -93471093 + B4 SINE B4 108 229 -63 3 797 243 374 56 35 chr12 27787539 27787683 -93469847 - MER20 DNA MER1_type -10 209 63 3 797 721 313 65 39 chr12 27788125 27788404 -93469126 + B4A SINE B4 7 292 0 3 797 1086 171 40 36 chr12 27788815 27789040 -93468490 - URR1A DNA MER1_type 0 226 1 3 797 446 300 64 44 chr12 27791168 27791552 -93465978 - MLT1C LTR MaLR -12 378 4 3 797 719 293 94 105 chr12 27792090 27792452 -93465078 + MTE2a LTR MaLR 1 358 -21 3 797 903 19 0 0 chr12 27792454 27792559 -93464971 + (GGAAA)n Simple_repeat Simple_repeat 5 109 0 4 797 184 278 181 9 chr12 27792683 27792799 -93464731 - MIRc SINE MIR -68 200 65 4 797 807 103 0 35 chr12 27793277 27793418 -93464112 + L1Md_F2 LINE L1 6445 6580 -2 4 797 593 136 10 0 chr12 27793426 27793529 -93464001 + (TA)n Simple_repeat Simple_repeat 2 105 0 4 797 857 60 0 8 chr12 27795570 27795687 -93461843 + (GAAAA)n Simple_repeat Simple_repeat 3 118 0 4 797 368 217 109 0 chr12 27795700 27795792 -93461738 + ID_B1 SINE B4 115 216 -8 4 797 469 235 15 8 chr12 27796104 27796237 -93461293 + L1M4c LINE L1 2307 2440 -3944 4 797 912 325 113 21 chr12 27796266 27796788 -93460742 + Tigger7 DNA MER2_type 6 575 -1916 4 797 475 314 63 4 chr12 27796785 27797022 -93460508 + Tigger7 DNA MER2_type 2154 2404 -87 4 797 269 266 173 58 chr12 27797403 27797762 -93459768 + L1M4c LINE L1 2782 3181 -3201 4 797 287 313 69 9 chr12 27797966 27798082 -93459448 + L1M4c LINE L1 3732 3854 -2528 4 797 279 232 0 28 chr12 27798088 27798159 -93459371 + (CATA)n Simple_repeat Simple_repeat 4 72 0 4 797 462 184 27 7 chr12 27798183 27798331 -93459199 + (CATA)n Simple_repeat Simple_repeat 4 154 0 4 797 309 312 11 0 chr12 27798340 27798433 -93459097 + (CA)n Simple_repeat Simple_repeat 2 95 0 4 797 236 200 0 39 chr12 27798473 27798525 -93459005 + L1ME2z LINE L1 5901 5950 -494 4 797 369 343 80 37 chr12 27798708 27799008 -93458522 - MLT1E3 LTR MaLR -49 575 263 4 797 3194 39 9 62 chr12 27799144 27799578 -93457952 - RLTR10A LTR ERVK 0 411 1 4 797 315 330 0 17 chr12 27799773 27799890 -93457640 - PB1D10 SINE Alu -1 116 2 4 797 433 273 29 43 chr12 27802526 27802664 -93454866 + B4A SINE B4 157 292 0 4 797 243 0 0 0 chr12 27802704 27802731 -93454799 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 797 226 219 16 0 chr12 27804744 27804808 -93452722 - MLT1A0 LTR MaLR -32 333 269 4 797 403 279 70 16 chr12 27805623 27805809 -93451721 + MLT1C LTR MaLR 255 450 -17 4 797 1156 68 0 13 chr12 27806589 27806738 -93450792 + B1_Mus2 SINE Alu 1 147 0 4 797 609 102 0 0 chr12 27806739 27806847 -93450683 + (CAAAAA)n Simple_repeat Simple_repeat 1 108 0 4 797 584 288 87 10 chr12 27806994 27807201 -93450329 + B4A SINE B4 64 286 -6 4 797 207 333 0 0 chr12 27807207 27807270 -93450260 + (CATA)n Simple_repeat Simple_repeat 4 66 0 4 797 717 12 0 0 chr12 27807412 27807494 -93450036 + (TC)n Simple_repeat Simple_repeat 2 83 0 4 797 731 278 34 19 chr12 27807514 27807723 -93449807 - ID_B1 SINE B4 -11 213 2 4 797 644 199 26 19 chr12 27808124 27808278 -93449252 + Lx7 LINE L1 7534 7688 -8 4 797 429 262 71 32 chr12 27809057 27809211 -93448319 - L1M1 LINE L1 -512 5788 5629 4 797 374 225 12 24 chr12 27809405 27809569 -93447961 + GA-rich Low_complexity Low_complexity 1 162 0 4 797 425 340 58 10 chr12 27809919 27810127 -93447403 + B4 SINE B4 1 218 -74 4 797 201 256 0 0 chr12 27810151 27810190 -93447340 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 797 561 236 191 6 chr12 27811080 27811263 -93446267 - ORR1D1 LTR MaLR -13 361 145 4 797 618 264 65 24 chr12 27811259 27811537 -93445993 - MTD LTR MaLR -67 352 12 4 797 223 262 0 15 chr12 27812994 27813060 -93444470 + CT-rich Low_complexity Low_complexity 2 66 0 4 797 198 103 0 0 chr12 27813160 27813189 -93444341 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 4 797 744 144 119 15 chr12 27813382 27813516 -93444014 + B1_Mur4 SINE Alu 1 148 -2 4 797 220 262 56 101 chr12 27813564 27813653 -93443877 + B1_Mus2 SINE Alu 3 87 -60 4 797 1670 176 17 114 chr12 27813646 27813735 -93443795 - ORR1C1 LTR MaLR -12 366 279 4 797 1269 124 11 5 chr12 27813735 27813922 -93443608 + B2_Mm2 SINE B2 1 188 -7 4 797 1670 176 17 114 chr12 27813922 27814237 -93443293 - ORR1C1 LTR MaLR -100 278 1 4 797 286 222 67 92 chr12 27814610 27814729 -93442801 + PB1D7 SINE Alu 5 120 0 4 797 1052 38 8 0 chr12 27817870 27818003 -93439527 + (TCTCCC)n Simple_repeat Simple_repeat 3 136 0 4 797 443 161 95 35 chr12 27818961 27819077 -93438453 - Lx4B LINE L1 0 7058 6936 4 797 828 304 9 9 chr12 27819710 27819932 -93437598 + B4A SINE B4 65 286 -6 4 797 495 123 0 0 chr12 27819956 27820037 -93437493 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 797 909 302 52 0 chr12 27820856 27821180 -93436350 - MER2 DNA MER2_type 0 345 5 4 797 787 326 18 33 chr12 27821324 27821600 -93435930 + B4A SINE B4 8 279 -13 4 797 595 320 46 15 chr12 27822342 27822602 -93434928 - B4A SINE B4 -22 270 3 4 797 405 0 0 0 chr12 27822735 27822780 -93434750 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 797 26 0 0 0 chr12 27823858 27823884 -93433646 + AT_rich Low_complexity Low_complexity 1 26 0 4 797 639 0 0 0 chr12 27824202 27824273 -93433257 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 797 405 0 0 0 chr12 27825016 27825061 -93432469 + (TCC)n Simple_repeat Simple_repeat 1 45 0 4 797 860 239 14 33 chr12 27827201 27827396 -93430134 - B4A SINE B4 -2 290 100 4 797 1597 235 37 13 chr12 27827396 27827771 -93429759 + MTD LTR MaLR 1 384 -35 4 797 262 280 71 51 chr12 27827781 27827879 -93429651 - B4A SINE B4 -192 100 1 4 797 192 111 0 0 chr12 27830342 27830378 -93427152 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 4 797 1046 217 128 73 chr12 27831051 27831242 -93426288 - ORR1D2 LTR MaLR -8 362 180 4 797 660 26 0 0 chr12 27831242 27831320 -93426210 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 797 1046 217 128 73 chr12 27831320 27831471 -93426059 - ORR1D2 LTR MaLR -191 179 1 4 797 281 256 164 55 chr12 27831471 27831574 -93425956 + MTE2a LTR MaLR 32 148 -271 4 797 550 200 43 36 chr12 27831605 27831745 -93425785 + MTE2a LTR MaLR 239 379 0 4 797 469 281 0 80 chr12 27832062 27832213 -93425317 - ID_B1 SINE B4 0 224 86 4 797 282 195 11 22 chr12 27833241 27833330 -93424200 + GA-rich Low_complexity Low_complexity 3 90 0 4 797 364 292 38 0 chr12 27833713 27833819 -93423711 + MTE2b LTR MaLR 12 121 -258 4 797 938 301 18 26 chr12 27834346 27834687 -93422843 + Lx8 LINE L1 6696 7033 -440 4 797 943 227 148 27 chr12 27834724 27835080 -93422450 + MTD LTR MaLR 1 399 -20 4 797 27 29 0 0 chr12 27835408 27835442 -93422088 + AT_rich Low_complexity Low_complexity 1 34 0 4 797 1069 250 21 35 chr12 27837522 27837808 -93419722 + B4 SINE B4 1 282 -10 4 797 1170 80 14 130 chr12 27838610 27838826 -93418704 + B2_Mm2 SINE B2 2 192 -3 4 797 214 331 43 98 chr12 27840086 27840270 -93417260 + B4 SINE B4 1 174 -118 4 797 390 108 0 0 chr12 27840291 27840356 -93417174 + (CAG)n Simple_repeat Simple_repeat 1 65 0 4 797 488 298 69 85 chr12 27841695 27842058 -93415472 + ORR1E LTR MaLR 3 359 0 4 797 1230 242 136 24 chr12 27842111 27842450 -93415080 + MTE2b LTR MaLR 1 377 -2 4 797 351 0 0 0 chr12 27842783 27842822 -93414708 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 797 830 250 57 70 chr12 27846797 27847098 -93410432 + MTE2b LTR MaLR 69 365 -14 4 797 1427 93 0 20 chr12 27847339 27847537 -93409993 - B2_Mm2 SINE B2 0 195 2 4 797 225 355 40 24 chr12 27847821 27847945 -93409585 - MER87 LTR ERV1 -7 534 409 4 797 340 293 78 63 chr12 27848121 27848263 -93409267 - MER20 DNA MER1_type -69 150 7 4 797 501 17 0 0 chr12 27848852 27848910 -93408620 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 797 343 365 38 13 chr12 27848928 27849086 -93408444 - RSINE1 SINE B4 -2 163 2 4 797 270 81 0 0 chr12 27849138 27849175 -93408355 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 797 360 0 0 0 chr12 27849175 27849214 -93408316 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 797 289 394 20 27 chr12 27849214 27849360 -93408170 - RSINE1 SINE B4 -18 147 3 4 797 535 339 62 9 chr12 27849545 27849771 -93407759 + MLT1G1 LTR MaLR 335 572 -7 4 797 277 261 5 108 chr12 27850011 27850196 -93407334 + G-rich Low_complexity Low_complexity 3 168 0 4 797 227 262 0 113 chr12 27850244 27850438 -93407092 + G-rich Low_complexity Low_complexity 5 176 0 4 797 729 278 69 33 chr12 27850813 27851118 -93406412 - L1MB7 LINE L1 -109 6075 5760 4 797 6142 46 1 4 chr12 27851351 27852094 -93405436 - L1Md_F2 LINE L1 0 6582 5842 4 797 244 313 147 40 chr12 27852157 27852430 -93405100 + MLT1A0 LTR MaLR 1 302 -63 4 797 569 278 71 11 chr12 27854063 27854245 -93403285 + B3A SINE B2 5 197 -1 4 797 400 230 40 149 chr12 27854367 27854515 -93403015 - MTEa LTR MaLR -44 335 204 4 797 1193 68 0 0 chr12 27854516 27854662 -93402868 + B1_Mm SINE Alu 2 147 0 4 797 890 225 14 34 chr12 27854690 27854897 -93402633 - MTEa LTR MaLR -163 216 14 4 797 2411 282 107 75 chr12 27854967 27856075 -93401455 - MTEa-int LTR MaLR -97 1483 341 4 797 925 79 0 0 chr12 27856073 27856200 -93401330 - B1_Mus1 SINE Alu 0 148 22 4 797 783 264 82 79 chr12 27856216 27856557 -93400973 - MTEa-int LTR MaLR -1236 344 3 4 797 907 242 151 17 chr12 27856557 27856884 -93400646 - MTEa LTR MaLR -16 343 1 4 797 433 258 42 63 chr12 27859557 27859747 -93397783 - L1M4 LINE L1 -2435 4209 4024 4 797 233 300 23 81 chr12 27859808 27859895 -93397635 - ID SINE ID -139 85 4 4 797 674 288 102 46 chr12 27860175 27861008 -93396522 - L1M4 LINE L1 -3124 3520 2641 4 797 183 114 0 0 chr12 27861913 27861948 -93395582 + (A)n Simple_repeat Simple_repeat 1 35 0 4 797 308 309 70 41 chr12 27862216 27862388 -93395142 - L1M4 LINE L1 -6077 465 289 4 797 695 277 30 5 chr12 27862653 27862856 -93394674 + MTEa LTR MaLR 169 376 -3 4 797 1313 322 45 6 chr12 27862860 27863397 -93394133 + MTEa-int LTR MaLR 2 559 -1021 4 797 667 109 51 0 chr12 27863408 27863564 -93393966 + (TAGA)n Simple_repeat Simple_repeat 2 165 0 4 797 404 19 0 19 chr12 27863568 27863622 -93393908 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 797 550 281 129 15 chr12 27863635 27863837 -93393693 + MTEa-int LTR MaLR 809 1033 -547 4 797 240 253 13 26 chr12 27863862 27863939 -93393591 + (CATA)n Simple_repeat Simple_repeat 1 76 0 4 797 279 0 0 0 chr12 27864310 27864341 -93393189 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 797 584 225 160 27 chr12 27864394 27864581 -93392949 + B3 SINE B2 2 213 -3 4 797 188 100 25 0 chr12 27865087 27865127 -93392403 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 797 438 305 78 0 chr12 27866112 27866240 -93391290 + RSINE1 SINE B4 24 161 -4 4 797 219 47 0 123 chr12 27866897 27866970 -93390560 + G-rich Low_complexity Low_complexity 2 65 0 4 797 184 301 14 0 chr12 27867982 27868055 -93389475 - MIRc SINE MIR -49 219 146 4 797 487 256 0 70 chr12 27868564 27868707 -93388823 + B4 SINE B4 160 292 0 5 797 372 218 0 0 chr12 27868707 27868794 -93388736 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 797 230 304 21 21 chr12 27869229 27869323 -93388207 + L2 LINE L2 2797 2890 -529 5 797 234 0 0 0 chr12 27869582 27869608 -93387922 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 797 786 264 42 0 chr12 27869645 27869838 -93387692 - B4 SINE B4 -8 284 84 5 797 488 323 112 29 chr12 27869912 27870154 -93387376 - B4A SINE B4 0 292 31 5 797 21 0 0 0 chr12 27873612 27873633 -93383897 + AT_rich Low_complexity Low_complexity 1 21 0 5 797 633 212 6 76 chr12 27873637 27873795 -93383735 + B1_Mm SINE Alu 1 147 0 5 797 211 107 68 51 chr12 27873799 27873858 -93383672 + A-rich Low_complexity Low_complexity 2 61 0 5 797 282 148 0 0 chr12 27873898 27873952 -93383578 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 797 383 304 0 34 chr12 27873954 27874073 -93383457 - B4A SINE B4 0 292 178 5 797 435 291 5 136 chr12 27874117 27874308 -93383222 - ORR1E LTR MaLR -11 348 183 5 797 285 163 0 0 chr12 27874404 27874453 -93383077 - ORR1E LTR MaLR -306 53 5 5 797 421 217 26 78 chr12 27875218 27875333 -93382197 - PB1D9 SINE Alu -2 118 10 5 797 263 300 0 0 chr12 27877589 27877659 -93379871 - MIRm SINE MIR -3 273 204 5 797 405 0 0 0 chr12 27878421 27878466 -93379064 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 797 648 0 0 0 chr12 27878791 27878863 -93378667 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 797 189 0 0 0 chr12 27878863 27878884 -93378646 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 797 275 258 108 39 chr12 27879129 27879258 -93378272 + MLT2B2 LTR ERVL 425 562 0 5 797 207 218 0 0 chr12 27879476 27879531 -93377999 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 797 659 316 9 19 chr12 27879561 27879777 -93377753 - B3 SINE B2 -2 214 1 5 797 311 267 0 0 chr12 27880157 27880247 -93377283 + (CCA)n Simple_repeat Simple_repeat 3 92 0 5 797 22 56 0 0 chr12 27882085 27882121 -93375409 + AT_rich Low_complexity Low_complexity 1 36 0 5 797 1459 246 45 55 chr12 27882204 27882695 -93374835 - Lx9 LINE L1 -199 7445 6960 5 797 254 246 0 34 chr12 27882770 27882829 -93374701 + MIRm SINE MIR 94 150 -126 5 797 711 0 0 0 chr12 27883823 27883902 -93373628 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 797 336 313 132 0 chr12 27884010 27884192 -93373338 - MLT2B4 LTR ERVL -350 206 1 5 797 696 295 109 25 chr12 27884762 27885082 -93372448 - Lx8 LINE L1 -136 7337 6991 5 797 249 338 94 24 chr12 27885527 27885739 -93371791 + MLT1G3 LTR MaLR 125 351 -244 5 797 669 297 111 60 chr12 27887606 27887939 -93369591 + ORR1E LTR MaLR 8 357 -2 5 797 2692 48 3 3 chr12 27888517 27888850 -93368680 - L1_Mus1 LINE L1 -1 6566 6234 5 797 24 0 0 0 chr12 27888866 27888890 -93368640 + AT_rich Low_complexity Low_complexity 1 24 0 5 797 1461 205 115 3 chr12 27888951 27889308 -93368222 - MTD LTR MaLR 0 419 23 5 797 323 242 0 0 chr12 27889323 27889389 -93368141 + BGLII_B LTR ERVK 349 414 -27 5 797 477 34 0 0 chr12 27890973 27891032 -93366498 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 797 776 326 21 56 chr12 27891235 27891664 -93365866 + BGLII_B LTR ERVK 1 414 -27 5 797 558 0 0 0 chr12 27892326 27892388 -93365142 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 5 797 1161 83 0 0 chr12 27892847 27893027 -93364503 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 797 471 238 19 9 chr12 27893401 27893507 -93364023 + B4A SINE B4 184 290 -2 5 797 212 95 0 67 chr12 27893700 27893745 -93363785 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 5 797 210 240 40 0 chr12 27894110 27894160 -93363370 - B1F SINE Alu 0 149 98 5 797 263 337 0 11 chr12 27894130 27894220 -93363310 - ID_B1 SINE B4 -48 176 88 5 797 255 308 0 0 chr12 27894301 27894379 -93363151 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 797 210 105 0 0 chr12 27894379 27894417 -93363113 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 797 780 74 25 0 chr12 27894501 27894622 -93362908 + (GA)n Simple_repeat Simple_repeat 1 124 0 5 797 24 32 0 0 chr12 27895358 27895389 -93362141 + AT_rich Low_complexity Low_complexity 1 31 0 5 797 645 14 0 0 chr12 27895452 27895526 -93362004 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 797 372 333 29 69 chr12 27895559 27895804 -93361726 - B4A SINE B4 -23 269 35 5 797 573 192 0 0 chr12 27895830 27895955 -93361575 + CT-rich Low_complexity Low_complexity 3 127 0 5 797 236 229 132 0 chr12 27895957 27896040 -93361490 - B1F SINE Alu -15 134 41 5 797 29873 85 76 9 chr12 27896321 27902128 -93355402 - L1Md_F2 LINE L1 -2 6580 387 5 797 201 74 0 0 chr12 27902304 27902331 -93355199 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 5 797 428 368 0 7 chr12 27902378 27902515 -93355015 - RSINE1 SINE B4 -11 154 19 5 797 294 208 12 72 chr12 27902984 27903067 -93354463 - PB1D10 SINE Alu 0 117 40 5 797 1562 227 83 16 chr12 27903473 27903858 -93353672 - MTD LTR MaLR -4 415 5 5 797 225 245 38 0 chr12 27904097 27904150 -93353380 + MTEa LTR MaLR 325 379 0 5 797 2423 170 14 7 chr12 27904737 27905152 -93352378 + MTC LTR MaLR 1 418 -3 5 797 447 68 0 0 chr12 27905580 27905639 -93351891 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 5 797 1269 277 50 0 chr12 27907001 27907362 -93350168 - MTEa LTR MaLR 0 379 1 5 797 366 318 87 52 chr12 27908848 27909193 -93348337 - MLT1C LTR MaLR -69 398 42 5 797 381 261 44 0 chr12 27909341 27909456 -93348074 + B1_Mur2 SINE Alu 2 136 -13 5 797 458 46 15 0 chr12 27909459 27909524 -93348006 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 5 797 807 11 0 0 chr12 27910784 27910876 -93346654 + (TC)n Simple_repeat Simple_repeat 2 93 0 5 797 303 49 0 0 chr12 27910877 27910918 -93346612 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 5 797 226 312 94 33 chr12 27911082 27911294 -93346236 + L1MEc LINE L1 114 338 -6062 5 797 1199 247 112 17 chr12 27912435 27912793 -93344737 + MTD LTR MaLR 28 419 0 5 797 317 369 69 5 chr12 27912807 27912995 -93344535 - L2 LINE L2 -1049 2370 2171 5 797 228 346 70 16 chr12 27913287 27913416 -93344114 - L1M6 LINE L1 -5729 767 632 5 797 489 222 0 0 chr12 27913846 27913936 -93343594 - B3A SINE B2 -104 94 5 5 797 759 201 0 0 chr12 27914482 27914651 -93342879 + (TA)n Simple_repeat Simple_repeat 1 169 0 5 797 204 179 0 0 chr12 27914679 27914718 -93342812 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 797 593 330 106 24 chr12 27914729 27915070 -93342460 - MLT2B2 LTR ERVL 0 515 147 5 797 2124 176 11 14 chr12 27915154 27915522 -93342008 - ORR1B2 LTR MaLR 0 367 1 5 797 207 100 0 0 chr12 27915754 27915784 -93341746 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5 797 226 278 45 40 chr12 27916134 27916310 -93341220 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 5 797 593 134 9 0 chr12 27916332 27916444 -93341086 + (TGGA)n Simple_repeat Simple_repeat 4 116 0 5 797 2790 93 28 135 chr12 27916824 27917356 -93340174 - IAPLTR2_Mm LTR ERVK 0 475 1 5 797 7066 33 4 12 chr12 27917358 27918192 -93339338 - IAPEz-int LTR ERVK -2 6479 5653 5 99 2652 76 0 6 chr12 27918187 27918531 -93338999 - IAPEz-int LTR ERVK -4781 1700 1359 5 798 3506 67 7 16 chr12 27918531 27919106 -93338424 - IAPEz-int LTR ERVK -5819 662 168 5 798 236 244 0 0 chr12 27919106 27919151 -93338379 - RLTR27 LTR ERVK -34 275 231 5 798 885 182 52 5 chr12 27919157 27919350 -93338180 - IAPEz-int LTR ERVK -1783 204 3 5 798 2811 95 21 131 chr12 27919352 27919886 -93337644 - IAPLTR2_Mm LTR ERVK 0 475 1 5 798 706 289 5 5 chr12 27922053 27922244 -93335286 + ID_B1 SINE B4 16 206 -18 5 798 642 327 42 4 chr12 27922286 27922547 -93334983 + B4 SINE B4 4 274 -18 5 798 761 283 50 39 chr12 27922696 27922979 -93334551 - B4A SINE B4 -1 291 6 5 798 378 0 0 0 chr12 27923957 27923999 -93333531 + (CACAG)n Simple_repeat Simple_repeat 1 42 0 5 798 3256 84 90 8 chr12 27925680 27926148 -93331382 - L1Md_F2 LINE L1 0 6582 6077 5 798 4167 31 6 0 chr12 27926148 27926635 -93330895 + L1Md_A LINE L1 5097 5586 -297 5 798 9163 5 0 0 chr12 27926635 27927631 -93329899 + L1Md_A LINE L1 5587 6582 0 5 798 2561 61 4 3 chr12 27927634 27927972 -93329558 + L1Md_F2 LINE L1 5214 5585 -298 5 798 8117 51 2 2 chr12 27927973 27928967 -93328563 + L1Md_F2 LINE L1 5587 6580 -2 5 798 4671 71 0 0 chr12 27928968 27929757 -93327773 + L1Md_F2 LINE L1 5293 6081 -501 5 798 337 282 34 47 chr12 27934634 27934783 -93322747 + B1F SINE Alu 1 147 -2 5 798 228 135 0 0 chr12 27934949 27934986 -93322544 + (CTG)n Simple_repeat Simple_repeat 2 38 0 5 798 700 306 12 5 chr12 27935073 27935283 -93322247 + B4A SINE B4 5 211 -81 5 798 405 39 0 0 chr12 27935317 27935368 -93322162 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 798 825 329 25 11 chr12 27936132 27936418 -93321112 + B4A SINE B4 3 292 0 5 798 318 180 0 0 chr12 27936770 27936831 -93320699 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 798 307 278 114 34 chr12 27937170 27937319 -93320211 - L1ME4a LINE L1 -265 5859 5699 5 798 375 285 129 63 chr12 27938588 27938936 -93318594 + MLT1C LTR MaLR 94 464 -3 5 798 294 106 104 15 chr12 27939570 27939637 -93317893 - ORR1D2 LTR MaLR -1 369 297 5 798 1018 194 77 23 chr12 27939984 27940205 -93317325 - MTEa LTR MaLR -17 362 130 5 798 427 187 40 0 chr12 27940232 27940307 -93317223 + B3 SINE B2 47 124 -92 5 798 933 9 0 0 chr12 27940371 27940477 -93317053 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 5 798 219 167 0 0 chr12 27940817 27940859 -93316671 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 798 840 309 89 9 chr12 27941574 27941901 -93315629 + MTD LTR MaLR 53 405 -14 5 798 389 330 54 34 chr12 27941904 27942202 -93315328 + L1MEf LINE L1 1357 1660 -4540 5 798 420 263 184 88 chr12 27942398 27942615 -93314915 + B4 SINE B4 23 260 -32 5 798 345 24 0 0 chr12 27942631 27942673 -93314857 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 798 630 0 0 0 chr12 27942820 27942890 -93314640 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 798 252 0 0 0 chr12 27942906 27942934 -93314596 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 798 518 343 52 18 chr12 27943462 27943789 -93313741 + L1MB8 LINE L1 5663 6000 -178 6 798 413 245 146 12 chr12 27943834 27944074 -93313456 + RLTR10A LTR ERVK 140 411 0 6 798 462 178 0 0 chr12 27944263 27944336 -93313194 + Lx5 LINE L1 6725 6797 -253 6 798 651 88 0 0 chr12 27944456 27944547 -93312983 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 6 798 28 0 0 0 chr12 27944574 27944602 -93312928 + AT_rich Low_complexity Low_complexity 1 28 0 6 798 952 60 120 7 chr12 27944934 27945084 -93312446 - B2_Mm2 SINE B2 -27 168 2 6 798 832 260 46 105 chr12 27945132 27945505 -93312025 + MTEa LTR MaLR 3 353 -26 6 798 389 308 51 0 chr12 27946293 27946410 -93311120 + MER58B DNA MER1_type 219 341 0 6 798 1230 85 0 0 chr12 27947240 27947417 -93310113 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 6 798 321 301 19 0 chr12 27947469 27947572 -93309958 - PB1D10 SINE Alu -8 109 5 6 798 588 40 0 0 chr12 27947651 27947726 -93309804 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 6 798 244 375 100 0 chr12 27948768 27948928 -93308602 - LTR40a LTR ERVL 0 519 344 6 798 331 302 62 54 chr12 27948949 27949061 -93308469 + RSINE1 SINE B4 53 165 0 6 798 22 0 0 0 chr12 27949913 27949935 -93307595 + AT_rich Low_complexity Low_complexity 1 22 0 6 798 629 250 104 6 chr12 27949941 27950114 -93307416 + Lx8 LINE L1 7124 7313 -160 6 798 4089 122 20 27 chr12 27950731 27951389 -93306141 - Lx LINE L1 -5 6649 5997 6 798 309 109 0 0 chr12 27951400 27951446 -93306084 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 798 1388 164 5 0 chr12 27951573 27951793 -93305737 - URR1B DNA MER1_type -3 222 2 6 798 522 0 0 0 chr12 27951932 27951990 -93305540 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 798 207 0 0 0 chr12 27951990 27952012 -93305518 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 798 402 125 16 0 chr12 27952013 27952077 -93305453 - B1_Mus2 SINE Alu -77 70 6 6 798 313 256 26 0 chr12 27952077 27952091 -93305439 - B4A SINE B4 -136 156 77 6 798 339 85 0 0 chr12 27952664 27952711 -93304819 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 798 947 271 37 4 chr12 27952720 27952990 -93304540 - B4A SINE B4 -11 281 3 6 798 486 0 0 0 chr12 27952997 27953051 -93304479 + (TTG)n Simple_repeat Simple_repeat 2 55 0 6 798 255 328 16 65 chr12 27953374 27953498 -93304032 + L2c LINE L2 3269 3386 -1 6 798 417 70 0 0 chr12 27954237 27954294 -93303236 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 798 289 362 0 17 chr12 27954457 27954575 -93302955 - B4A SINE B4 -95 197 82 6 798 527 221 0 75 chr12 27954589 27954736 -93302794 - B3A SINE B2 -4 194 59 6 798 267 226 19 0 chr12 27954843 27954896 -93302634 - B4 SINE B4 -66 226 173 6 798 1296 180 33 72 chr12 27954905 27955240 -93302290 - RLTRETN_Mm LTR ERVK 0 322 1 6 798 1333 226 68 10 chr12 27957929 27958237 -93299293 + MTD LTR MaLR 1 326 -93 6 798 881 98 7 0 chr12 27958288 27958431 -93299099 + (TG)n Simple_repeat Simple_repeat 1 144 0 6 798 529 302 7 21 chr12 27958438 27958580 -93298950 - B3A SINE B2 -50 148 9 6 798 1053 306 33 11 chr12 27959070 27959430 -93298100 + MTE2b LTR MaLR 1 368 -11 6 798 217 150 25 0 chr12 27959483 27959523 -93298007 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 798 402 291 23 16 chr12 27959534 27959663 -93297867 - B4A SINE B4 -11 281 152 6 798 185 86 0 54 chr12 27959895 27959932 -93297598 + (CAATA)n Simple_repeat Simple_repeat 4 38 0 6 798 567 78 0 0 chr12 27960038 27960115 -93297415 + (GGA)n Simple_repeat Simple_repeat 3 79 0 6 798 2173 149 11 35 chr12 27961517 27961893 -93295637 - ORR1B2 LTR MaLR 0 367 1 6 798 605 292 28 52 chr12 27962186 27962435 -93295095 - MTEa LTR MaLR -2 377 135 6 798 567 0 0 0 chr12 27962436 27962499 -93295031 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 798 237 98 0 0 chr12 27962890 27962931 -93294599 + (T)n Simple_repeat Simple_repeat 1 41 0 6 798 1273 141 34 30 chr12 27963359 27963593 -93293937 + ORR1A4 LTR MaLR 95 329 0 6 798 249 256 7 74 chr12 27963860 27963995 -93293535 - L1MEg LINE L1 -5180 904 779 6 798 1026 148 0 0 chr12 27964212 27964388 -93293142 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 6 798 1109 156 16 10 chr12 27964390 27964584 -93292946 - B2_Mm2 SINE B2 0 195 1 6 798 481 239 17 17 chr12 27964933 27965052 -93292478 + B4A SINE B4 2 120 -172 6 798 183 80 0 0 chr12 27965182 27965207 -93292323 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 798 525 71 0 0 chr12 27965266 27965336 -93292194 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 798 551 197 6 0 chr12 27966047 27966225 -93291305 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 798 772 180 0 11 chr12 27966260 27966611 -93290919 + (TG)n Simple_repeat Simple_repeat 1 346 0 6 798 378 267 125 13 chr12 27966721 27966873 -93290657 - B4A SINE B4 -116 176 8 6 798 441 312 54 85 chr12 27967211 27967505 -93290025 - B4A SINE B4 -6 286 2 6 798 567 0 0 0 chr12 27968536 27968599 -93288931 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 798 257 271 31 10 chr12 27968666 27968763 -93288767 + (CCCCAA)n Simple_repeat Simple_repeat 3 101 0 6 798 205 209 22 11 chr12 27968793 27968885 -93288645 + (CCCCAA)n Simple_repeat Simple_repeat 4 96 0 6 798 273 188 62 12 chr12 27968904 27968985 -93288545 + (CCCCAA)n Simple_repeat Simple_repeat 3 87 0 6 798 6941 117 4 41 chr12 27969032 27970159 -93287371 + Lx2 LINE L1 5912 6997 0 6 798 534 31 0 0 chr12 27970175 27970239 -93287291 + (GAAAA)n Simple_repeat Simple_repeat 2 65 0 6 798 395 124 20 40 chr12 27970812 27970913 -93286617 + C-rich Low_complexity Low_complexity 4 102 0 6 798 624 90 144 0 chr12 27971552 27971663 -93285867 + B1_Mus2 SINE Alu 21 147 0 6 798 204 211 0 0 chr12 27971683 27971721 -93285809 + GA-rich Low_complexity Low_complexity 2 39 0 6 798 962 139 6 0 chr12 27971722 27971887 -93285643 + (GGAA)n Simple_repeat Simple_repeat 4 169 0 6 798 1235 80 11 0 chr12 27971887 27972063 -93285467 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 798 271 293 42 25 chr12 27972136 27972255 -93285275 + RSINE1 SINE B4 43 163 -2 6 798 306 296 0 39 chr12 27972280 27972410 -93285120 + L1MA9 LINE L1 5812 5936 -376 6 798 611 238 24 0 chr12 27973677 27973803 -93283727 - B1_Mur1 SINE Alu -15 134 6 6 798 500 258 142 18 chr12 27974322 27974547 -93282983 - RMER15 LTR ERVL -18 557 305 6 798 338 294 136 38 chr12 27974821 27975005 -93282525 - Tigger12 DNA MER2_type -1307 652 451 6 798 366 156 0 0 chr12 27975363 27975427 -93282103 + A-rich Low_complexity Low_complexity 1 64 0 6 798 460 277 50 21 chr12 27976406 27976546 -93280984 - MTE2a LTR MaLR -1 378 235 6 798 22 0 0 0 chr12 27976612 27976634 -93280896 + GC_rich Low_complexity Low_complexity 1 22 0 6 798 649 295 6 0 chr12 27977115 27977271 -93280259 - B4A SINE B4 -2 290 134 6 798 242 329 0 12 chr12 27977862 27977945 -93279585 + ID4 SINE ID 2 83 0 6 798 24 0 0 0 chr12 27977999 27978023 -93279507 + AT_rich Low_complexity Low_complexity 1 24 0 6 798 189 175 0 0 chr12 27979446 27979486 -93278044 + A-rich Low_complexity Low_complexity 1 40 0 6 798 465 266 9 9 chr12 27979598 27979708 -93277822 + PB1D10 SINE Alu 1 110 -7 6 798 550 267 99 6 chr12 27979733 27979895 -93277635 + B4 SINE B4 32 208 -84 6 798 293 356 12 36 chr12 27979902 27980068 -93277462 + RSINE1 SINE B4 2 163 -2 6 798 432 0 0 0 chr12 27980194 27980242 -93277288 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 798 735 303 20 98 chr12 27980500 27980858 -93276672 + MTE2a LTR MaLR 8 337 -42 6 798 715 275 11 38 chr12 27982170 27982355 -93275175 + ID_B1 SINE B4 11 190 -34 6 798 182 37 37 0 chr12 27982381 27982408 -93275122 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 798 262 235 184 0 chr12 27982461 27982559 -93274971 - MER97b DNA MER1_type? -388 665 550 6 798 460 305 62 52 chr12 27984075 27984268 -93273262 - B4 SINE B4 -6 286 80 6 798 21 82 0 0 chr12 27984271 27984320 -93273210 + AT_rich Low_complexity Low_complexity 1 49 0 6 798 852 204 91 5 chr12 27984320 27984353 -93273177 - B3 SINE B2 0 216 183 6 798 432 0 0 0 chr12 27984353 27984401 -93273129 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 798 852 204 91 5 chr12 27984401 27984564 -93272966 - B3 SINE B2 -34 182 3 6 798 227 182 100 57 chr12 27984568 27984638 -93272892 - B4 SINE B4 -206 86 14 6 798 242 262 12 12 chr12 27984834 27984915 -93272615 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 798 230 364 109 0 chr12 27986510 27986620 -93270910 + B1F SINE Alu 2 123 -26 6 798 243 103 0 0 chr12 27986638 27986677 -93270853 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 6 798 861 282 54 18 chr12 27986684 27986962 -93270568 + B4 SINE B4 5 292 0 6 798 1115 194 35 155 chr12 27987209 27987576 -93269954 - MTC LTR MaLR -98 323 1 6 798 233 262 7 33 chr12 27989171 27989321 -93268209 + (TATATG)n Simple_repeat Simple_repeat 6 151 0 6 798 345 289 22 22 chr12 27989335 27989473 -93268057 + (TATATG)n Simple_repeat Simple_repeat 1 138 0 6 798 200 174 43 0 chr12 27990109 27990126 -93267404 + A-rich Low_complexity Low_complexity 1 17 0 6 798 304 234 78 0 chr12 27990126 27990203 -93267327 + ID4_ SINE ID 1 83 0 6 798 200 174 43 0 chr12 27990203 27990231 -93267299 + A-rich Low_complexity Low_complexity 18 47 0 6 798 497 221 29 9 chr12 27990233 27990338 -93267192 + PB1D7 SINE Alu 1 107 -13 6 798 235 0 28 28 chr12 27990829 27990865 -93266665 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 798 231 338 14 0 chr12 27990946 27991014 -93266516 + B4A SINE B4 2 70 -222 7 798 464 342 27 0 chr12 27991014 27991160 -93266370 + B4A SINE B4 1 150 -142 7 798 590 264 60 22 chr12 27992924 27993106 -93264424 + ID_B1 SINE B4 5 193 -31 7 798 591 15 0 0 chr12 27993119 27993187 -93264343 + (TC)n Simple_repeat Simple_repeat 1 68 0 7 798 198 0 0 0 chr12 27993187 27993208 -93264322 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 798 308 240 17 29 chr12 27994411 27994583 -93262947 + GA-rich Low_complexity Low_complexity 3 172 0 7 798 474 297 6 69 chr12 27997646 27997805 -93259725 + B4 SINE B4 134 282 -10 7 798 210 37 0 0 chr12 27997833 27997860 -93259670 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 798 288 0 0 0 chr12 27998318 27998350 -93259180 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 798 218 239 30 0 chr12 27999136 27999203 -93258327 + (TGAA)n Simple_repeat Simple_repeat 1 69 0 7 798 299 312 21 0 chr12 27999239 27999335 -93258195 + PB1D10 SINE Alu 14 111 -6 7 798 782 250 107 32 chr12 27999713 27999994 -93257536 - MTD LTR MaLR -14 405 104 7 798 353 179 128 23 chr12 28000003 28000089 -93257441 - MTD LTR MaLR -319 100 6 1 798 792 133 15 0 chr12 28000150 28000285 -93257245 + URR1B DNA MER1_type 89 225 0 2 798 851 164 0 22 chr12 28000287 28000468 -93257062 + (TA)n Simple_repeat Simple_repeat 1 177 0 3 798 539 300 48 20 chr12 28000666 28000948 -93256582 - L1MA4 LINE L1 -360 5931 5623 4 798 2540 142 34 12 chr12 28000948 28001360 -93256170 + MTC LTR MaLR 1 421 0 5 798 348 51 51 0 chr12 28001821 28001880 -93255650 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 798 291 114 0 0 chr12 28001880 28001924 -93255606 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 798 1645 54 5 10 chr12 28002583 28002790 -93254740 - L1_Mus3 LINE L1 -168 6470 6265 8 798 740 84 14 71 chr12 28002791 28002932 -93254598 + L1_Mus3 LINE L1 6493 6625 -13 8 798 198 0 0 0 chr12 28002935 28002957 -93254573 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 9 798 456 104 0 0 chr12 28002957 28003024 -93254506 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 1 798 225 283 33 0 chr12 28003092 28003152 -93254378 + PB1D10 SINE Alu 49 110 -7 1 798 205 255 0 0 chr12 28003163 28003210 -93254320 + GA-rich Low_complexity Low_complexity 3 49 0 1 798 377 266 93 19 chr12 28003954 28004115 -93253415 - L1MB7 LINE L1 -8 6176 6004 1 798 213 210 0 0 chr12 28005004 28005066 -93252464 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 798 245 284 0 15 chr12 28006781 28006849 -93250681 - B3A SINE B2 -58 140 74 1 798 242 242 16 31 chr12 28007105 28007169 -93250361 + MTC LTR MaLR 1 63 -358 1 798 770 210 14 0 chr12 28007192 28007335 -93250195 + B1_Mur4 SINE Alu 1 145 -5 1 798 885 215 4 90 chr12 28007814 28008059 -93249471 - Lx2B LINE L1 0 7000 6777 1 798 650 261 6 25 chr12 28008605 28008766 -93248764 - B3A SINE B2 -39 159 2 1 798 554 197 73 16 chr12 28010758 28010882 -93246648 + B1F SINE Alu 19 149 0 2 798 21 0 0 0 chr12 28011718 28011739 -93245791 + AT_rich Low_complexity Low_complexity 1 21 0 2 798 823 219 61 0 chr12 28011780 28011976 -93245554 - B3 SINE B2 -7 209 2 2 798 693 0 0 0 chr12 28011988 28012065 -93245465 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2 798 2067 131 19 9 chr12 28012338 28012662 -93244868 - ORR1A2 LTR MaLR 0 327 1 2 798 837 231 157 8 chr12 28013752 28014001 -93243529 + MTD LTR MaLR 119 404 -15 2 798 284 291 196 13 chr12 28014032 28014185 -93243345 + ID_B1 SINE B4 38 218 -6 2 798 715 111 16 0 chr12 28015839 28015965 -93241565 + BC1_Mm scRNA scRNA 1 128 -24 2 798 243 292 0 15 chr12 28016978 28017044 -93240486 + CT-rich Low_complexity Low_complexity 2 66 0 2 798 263 28 0 27 chr12 28017340 28017377 -93240153 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 798 307 288 97 18 chr12 28017381 28017494 -93240036 - RSINE1 SINE B4 -42 123 2 3 798 257 277 45 28 chr12 28018484 28018594 -93238936 - PB1D10 SINE Alu -17 103 1 3 798 295 21 42 21 chr12 28020010 28020058 -93237472 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 798 240 111 0 0 chr12 28020615 28020651 -93236879 + (T)n Simple_repeat Simple_repeat 1 36 0 3 798 26 0 0 0 chr12 28022162 28022188 -93235342 + AT_rich Low_complexity Low_complexity 1 26 0 3 798 279 79 0 0 chr12 28023377 28023415 -93234115 + (A)n Simple_repeat Simple_repeat 1 38 0 3 798 21 0 0 0 chr12 28024274 28024295 -93233235 + AT_rich Low_complexity Low_complexity 1 21 0 3 798 246 179 0 0 chr12 28025056 28025112 -93232418 + A-rich Low_complexity Low_complexity 1 56 0 3 798 23 0 0 0 chr12 28025194 28025217 -93232313 + AT_rich Low_complexity Low_complexity 1 23 0 3 798 35 0 0 0 chr12 28025878 28025913 -93231617 + AT_rich Low_complexity Low_complexity 1 35 0 3 798 207 114 0 0 chr12 28026677 28026712 -93230818 + (TCG)n Simple_repeat Simple_repeat 2 36 0 4 798 21 71 0 0 chr12 28027364 28027406 -93230124 + GC_rich Low_complexity Low_complexity 1 42 0 4 798 220 191 0 0 chr12 28027412 28027459 -93230071 + (CGG)n Simple_repeat Simple_repeat 3 49 0 4 798 255 197 0 67 chr12 28029363 28029445 -93228085 - PB1D7 SINE Alu 0 127 53 4 798 522 0 0 0 chr12 28029596 28029654 -93227876 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 798 270 0 0 0 chr12 28029957 28029987 -93227543 + (T)n Simple_repeat Simple_repeat 1 30 0 4 798 611 201 0 7 chr12 28031108 28031258 -93226272 + (CA)n Simple_repeat Simple_repeat 1 149 0 4 798 541 261 17 0 chr12 28032533 28032652 -93224878 - RSINE1 SINE B4 -43 122 2 4 798 338 325 68 47 chr12 28033569 28033847 -93223683 + MLT-int LTR MaLR 1450 1733 -2 4 798 603 299 73 30 chr12 28034342 28034645 -93222885 - L1MA4A LINE L1 -375 5928 5613 4 798 998 279 129 9 chr12 28034664 28034997 -93222533 + MTD LTR MaLR 44 416 -3 5 798 365 253 0 0 chr12 28034998 28035085 -93222445 - L1MA4A LINE L1 -675 5628 5542 4 798 446 336 100 93 chr12 28035510 28035799 -93221731 - B4 SINE B4 0 292 2 5 798 399 182 0 0 chr12 28036500 28036577 -93220953 + CT-rich Low_complexity Low_complexity 2 78 0 5 798 479 17 17 0 chr12 28036980 28037040 -93220490 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 5 798 183 80 0 0 chr12 28038662 28038687 -93218843 + (CAA)n Simple_repeat Simple_repeat 3 27 0 5 798 488 266 38 31 chr12 28038715 28038874 -93218656 - RSINE1 SINE B4 -4 161 2 5 798 644 234 60 39 chr12 28038914 28039096 -93218434 + MT2A LTR ERVL 348 533 0 5 798 252 86 0 0 chr12 28039191 28039226 -93218304 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 5 798 228 86 0 0 chr12 28039226 28039260 -93218270 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 5 798 292 298 171 40 chr12 28039470 28039645 -93217885 + B3A SINE B2 1 198 0 5 798 623 250 47 0 chr12 28039734 28039862 -93217668 + B1_Mur1 SINE Alu 1 134 -15 6 798 1094 78 7 0 chr12 28039866 28040020 -93217510 + (GGAA)n Simple_repeat Simple_repeat 3 157 0 6 798 202 268 52 40 chr12 28040384 28040468 -93217062 + MIRm SINE MIR 78 155 -107 6 798 495 0 0 0 chr12 28040656 28040711 -93216819 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 798 375 307 5 38 chr12 28040796 28040982 -93216548 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 798 420 347 83 28 chr12 28041077 28041329 -93216201 - B4 SINE B4 -23 269 4 6 798 302 221 19 30 chr12 28042999 28043082 -93214448 + B1F SINE Alu 34 120 0 6 798 934 225 28 14 chr12 28043607 28043819 -93213711 - B3 SINE B2 -1 215 1 6 798 845 214 156 4 chr12 28044037 28044152 -93213378 - RMER1C Other Other 0 1342 1226 6 798 192 40 0 0 chr12 28044152 28044177 -93213353 + (CAA)n Simple_repeat Simple_repeat 1 25 0 6 798 845 214 156 4 chr12 28044177 28044286 -93213244 - RMER1C Other Other -117 1225 1086 6 798 240 200 12 24 chr12 28045073 28045155 -93212375 + CT-rich Low_complexity Low_complexity 2 82 0 7 798 202 206 32 32 chr12 28045238 28045333 -93212197 + CT-rich Low_complexity Low_complexity 6 100 0 7 798 416 333 12 6 chr12 28046335 28046495 -93211035 + RSINE1 SINE B4 1 161 -4 7 798 420 97 0 0 chr12 28046528 28046590 -93210940 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 798 705 262 85 73 chr12 28046849 28046879 -93210651 + MT2B LTR ERVL 53 82 -451 7 798 210 37 0 0 chr12 28046879 28046906 -93210624 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 798 873 254 27 63 chr12 28046906 28047268 -93210262 + MT2B LTR ERVL 83 575 -26 7 798 1729 184 38 22 chr12 28047271 28047637 -93209893 - ORR1C1 LTR MaLR 0 378 7 7 798 664 295 72 69 chr12 28048134 28048425 -93209105 - B4A SINE B4 0 292 1 7 798 207 208 19 0 chr12 28048459 28048512 -93209018 + CT-rich Low_complexity Low_complexity 2 55 0 7 799 1580 191 70 23 chr12 28049499 28049842 -93207688 + ORR1B2 LTR MaLR 1 359 -8 7 799 1192 189 79 165 chr12 28050293 28050495 -93207035 - ORR1D1 LTR MaLR -3 371 207 8 799 559 203 48 16 chr12 28050495 28050620 -93206910 - B1_Mus1 SINE Alu -17 131 3 8 799 1192 189 79 165 chr12 28050620 28050823 -93206707 - ORR1D1 LTR MaLR -168 206 1 8 799 495 316 25 12 chr12 28050962 28051122 -93206408 + RSINE1 SINE B4 4 165 0 8 799 2079 159 107 13 chr12 28051592 28051974 -93205556 + MTC LTR MaLR 1 418 -3 8 799 4900 163 97 24 chr12 28051976 28053072 -93204458 + MTC-int LTR MaLR 2 1177 -81 8 799 683 215 27 9 chr12 28053046 28053226 -93204304 - B3 SINE B2 -2 196 1 8 799 432 198 0 0 chr12 28053240 28053326 -93204204 + MTC-int LTR MaLR 1173 1258 0 8 799 2235 192 17 5 chr12 28053328 28053742 -93203788 + MTC LTR MaLR 3 421 0 8 799 207 100 0 0 chr12 28054979 28055009 -93202521 + (TGG)n Simple_repeat Simple_repeat 3 32 0 8 799 825 304 39 4 chr12 28055025 28055306 -93202224 - B4A SINE B4 0 292 2 8 799 213 175 0 0 chr12 28055583 28055623 -93201907 + T-rich Low_complexity Low_complexity 1 40 0 8 799 399 113 0 0 chr12 28056627 28056689 -93200841 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 799 875 270 72 19 chr12 28056702 28056966 -93200564 - B4 SINE B4 -14 278 1 8 799 215 0 0 62 chr12 28057405 28057437 -93200093 + (TAA)n Simple_repeat Simple_repeat 2 31 0 9 799 7394 84 6 13 chr12 28057822 28059205 -93198325 - L1_Mus1 LINE L1 0 6567 5191 9 799 1283 177 67 24 chr12 28060556 28060811 -93196719 + Lx5 LINE L1 6785 7050 0 9 799 250 309 72 24 chr12 28061045 28061211 -93196319 + Tigger5 DNA MER2_type 2233 2406 0 9 799 7878 66 2 3 chr12 28061505 28063186 -93194344 - L1Md_F2 LINE L1 -1 6581 4903 9 799 469 273 8 40 chr12 28064000 28064126 -93193404 - RSINE1 SINE B4 -32 133 12 9 799 192 257 40 67 chr12 28064926 28065001 -93192529 + L2a LINE L2 3352 3424 -2 9 799 414 0 0 0 chr12 28065605 28065651 -93191879 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 799 265 164 27 0 chr12 28065655 28065728 -93191802 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 9 799 279 0 0 0 chr12 28065733 28065764 -93191766 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 799 297 0 0 0 chr12 28065764 28065796 -93191734 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 799 1620 0 0 0 chr12 28065796 28066030 -93191500 + (GA)n Simple_repeat Simple_repeat 1 234 0 1 799 414 0 0 0 chr12 28066524 28066570 -93190960 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 799 336 283 56 19 chr12 28067493 28067601 -93189929 - B1F SINE Alu -1 148 37 1 799 366 231 0 0 chr12 28067979 28068070 -93189460 + (CATG)n Simple_repeat Simple_repeat 4 94 0 1 799 932 305 22 57 chr12 28068072 28068441 -93189089 - Lx9 LINE L1 -385 7259 6904 1 799 436 320 8 8 chr12 28068688 28068814 -93188716 - B1F SINE Alu -12 137 12 1 799 337 242 53 30 chr12 28068874 28069006 -93188524 - Charlie7 DNA MER1_type -2155 457 323 1 799 434 257 6 0 chr12 28070007 28070182 -93187348 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 799 543 96 0 0 chr12 28071813 28071896 -93185634 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 799 186 298 152 8 chr12 28072390 28072522 -93185008 - L2b LINE L2 0 3375 3225 1 799 315 298 53 0 chr12 28072537 28072631 -93184899 + B1F2 SINE Alu 17 115 -34 1 799 374 167 73 0 chr12 28072956 28073052 -93184478 + L1Md_F3 LINE L1 6480 6582 -2 1 799 1928 116 0 53 chr12 28073593 28073911 -93183619 - L1Md_F2 LINE L1 -5 6577 6277 1 799 227 308 103 0 chr12 28074297 28074414 -93183116 - MER2B DNA MER2_type -21 315 187 1 799 2411 118 46 13 chr12 28074529 28074917 -93182613 + Lx2 LINE L1 6597 6997 0 1 799 339 227 77 167 chr12 28076183 28076416 -93181114 - ID_B1 SINE B4 -11 213 2 1 799 216 0 0 0 chr12 28077401 28077425 -93180105 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1 799 21 0 0 0 chr12 28077862 28077883 -93179647 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 236 239 0 22 chr12 28077944 28078034 -93179496 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1 799 860 314 22 29 chr12 28078038 28078310 -93179220 - B4 SINE B4 0 292 23 1 799 201 121 0 0 chr12 28078668 28078701 -93178829 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 1 799 956 262 110 29 chr12 28079097 28079458 -93178072 - MTD LTR MaLR -17 402 6 1 799 1243 265 111 70 chr12 28079799 28080359 -93177171 - Lx8 LINE L1 -3 7470 6888 1 799 6501 185 21 11 chr12 28080852 28081925 -93175605 + L1_Mur3 LINE L1 888 2047 -3830 1 799 600 53 0 0 chr12 28081925 28082001 -93175529 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 799 6501 171 24 6 chr12 28082001 28082430 -93175100 + L1_Mur3 LINE L1 2048 2473 -3404 1 799 492 153 0 0 chr12 28082449 28082534 -93174996 + (CTA)n Simple_repeat Simple_repeat 2 86 0 1 799 3109 143 38 4 chr12 28082534 28083082 -93174448 + L1_Mur3 LINE L1 4281 4847 -1030 1 799 292 295 84 22 chr12 28083922 28084108 -93173422 + MLT2B1 LTR ERVL 323 516 -40 1 799 38944 44 0 3 chr12 28084801 28091271 -93166259 - L1Md_T LINE L1 0 6585 38 1 799 381 22 0 0 chr12 28091354 28091400 -93166130 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 799 231 245 19 93 chr12 28091440 28091548 -93165982 - Lx8 LINE L1 -7 7466 7367 1 799 775 168 35 0 chr12 28091837 28091980 -93165550 - B1_Mus1 SINE Alu 0 148 1 1 799 264 333 0 0 chr12 28091980 28092058 -93165472 + B4A SINE B4 201 278 -14 1 799 442 234 0 28 chr12 28092103 28092248 -93165282 + (CATA)n Simple_repeat Simple_repeat 4 144 0 1 799 413 344 0 13 chr12 28092259 28092415 -93165115 + (CATA)n Simple_repeat Simple_repeat 2 155 0 1 799 262 270 0 31 chr12 28092449 28092579 -93164951 + (CATA)n Simple_repeat Simple_repeat 2 127 0 1 799 190 229 0 59 chr12 28092606 28092708 -93164822 + (CATATA)n Simple_repeat Simple_repeat 3 98 0 1 799 253 277 0 29 chr12 28093944 28094048 -93163482 + CT-rich Low_complexity Low_complexity 2 102 0 1 799 585 28 0 0 chr12 28094050 28094121 -93163409 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 799 234 105 0 0 chr12 28094230 28094268 -93163262 + (CTG)n Simple_repeat Simple_repeat 1 38 0 1 799 406 321 25 6 chr12 28094292 28094449 -93163081 - RSINE1 SINE B4 -5 160 1 1 799 270 56 0 0 chr12 28095804 28095840 -93161690 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 799 310 317 19 0 chr12 28097398 28097502 -93160028 + CT-rich Low_complexity Low_complexity 3 108 0 1 799 735 299 24 28 chr12 28098005 28098253 -93159277 - B4A SINE B4 -44 248 2 1 799 498 228 23 23 chr12 28098460 28098590 -93158940 - B1_Mur3 SINE Alu -1 148 19 1 799 1162 223 63 60 chr12 28099208 28099575 -93157955 - ORR1D2 LTR MaLR 0 370 3 1 799 8377 34 1 3 chr12 28100038 28101643 -93155887 - L1Md_F2 LINE L1 0 6582 4983 1 799 223 113 38 0 chr12 28102275 28102328 -93155202 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 799 700 295 131 8 chr12 28103066 28103302 -93154228 - B4 SINE B4 -8 284 20 1 799 2826 19 3 0 chr12 28103302 28103623 -93153907 - RLTRETN_Mm LTR ERVK 0 322 1 1 799 42544 21 5 3 chr12 28103623 28108459 -93149071 - MMETn-int LTR ERVK 0 4844 1 1 799 2845 16 3 0 chr12 28108459 28108780 -93148750 - RLTRETN_Mm LTR ERVK 0 322 1 1 799 462 294 26 7 chr12 28108950 28109104 -93148426 + MER3 DNA MER1_type 47 203 -6 1 799 228 238 79 0 chr12 28109057 28109120 -93148410 - MER3 DNA MER1_type -108 101 34 1 799 563 274 96 18 chr12 28109477 28109644 -93147886 + MTE2b LTR MaLR 146 325 -54 1 799 701 237 5 68 chr12 28110504 28110635 -93146895 + B3 SINE B2 39 167 -49 1 799 1868 159 136 0 chr12 28110635 28110980 -93146550 - ORR1B1 LTR MaLR -2 392 1 1 799 701 237 5 68 chr12 28110980 28111038 -93146492 + B3 SINE B2 168 216 0 1 799 251 277 90 29 chr12 28111098 28111230 -93146300 + MIRm SINE MIR 30 179 -97 1 799 197 323 154 6 chr12 28112071 28112227 -93145303 + MIRb SINE MIR 58 236 -26 1 799 499 306 83 54 chr12 28112518 28112963 -93144567 - MER34B-int LTR ERV1 -595 4761 4304 1 799 1397 239 41 22 chr12 28113171 28113534 -93143996 - ORR1D2 LTR MaLR 0 370 1 1 799 1073 238 108 58 chr12 28115214 28115557 -93141973 - ORR1D2 LTR MaLR -10 360 1 1 799 1000 160 107 24 chr12 28115775 28115980 -93141550 + URR1A DNA MER1_type 5 226 0 1 799 1370 296 16 13 chr12 28117136 28117509 -93140021 - MTE2b LTR MaLR -3 376 3 1 799 494 98 12 0 chr12 28117547 28117629 -93139901 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 799 1231 200 0 0 chr12 28118195 28118420 -93139110 - URR1B DNA MER1_type 0 225 1 1 799 727 276 15 15 chr12 28118619 28118814 -93138716 + B3A SINE B2 2 196 -2 1 799 198 143 0 0 chr12 28118815 28118850 -93138680 + (CATA)n Simple_repeat Simple_repeat 4 38 0 1 799 373 309 17 162 chr12 28122170 28122346 -93135184 + PB1D10 SINE Alu 1 148 -1 1 799 1557 17 0 0 chr12 28123247 28123427 -93134103 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 799 483 281 35 0 chr12 28123768 28123882 -93133648 - Lx8 LINE L1 -1158 6315 6198 1 799 630 82 0 0 chr12 28123882 28123980 -93133550 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 799 645 14 0 0 chr12 28124306 28124380 -93133150 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 799 262 327 87 23 chr12 28124695 28124867 -93132663 - L1M4 LINE L1 -355 5829 5647 1 799 381 295 108 14 chr12 28124917 28125130 -93132400 - L1M4 LINE L1 -616 5558 5326 1 799 557 279 60 55 chr12 28125141 28125505 -93132025 - L1M4 LINE L1 -875 5271 4906 1 799 192 111 0 0 chr12 28125964 28126000 -93131530 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 799 895 224 32 14 chr12 28126220 28126437 -93131093 + ID_B1 SINE B4 1 221 -3 1 799 817 237 69 29 chr12 28126455 28126659 -93130871 + B3 SINE B2 3 214 -2 1 799 759 229 61 129 chr12 28127438 28127834 -93129696 + MTEa LTR MaLR 1 369 -10 1 799 289 299 79 14 chr12 28128019 28128158 -93129372 - B1F SINE Alu -1 148 1 1 799 311 263 53 0 chr12 28129150 28129226 -93128304 - RSINE1 SINE B4 -21 144 65 1 799 678 268 36 108 chr12 28131185 28131519 -93126011 + MTEa LTR MaLR 65 374 -5 1 799 423 0 0 0 chr12 28131812 28131859 -93125671 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 799 694 264 48 19 chr12 28132175 28132445 -93125085 - Lx9 LINE L1 0 7644 7367 1 799 596 331 69 20 chr12 28133139 28133444 -93124086 - MTEa LTR MaLR -9 370 51 1 799 393 303 87 27 chr12 28133506 28133655 -93123875 - RSINE1 SINE B4 -5 160 3 1 799 232 323 40 70 chr12 28133655 28133708 -93123822 - MTEa LTR MaLR -329 50 1 1 799 231 163 23 0 chr12 28133804 28133847 -93123683 - U2 snRNA snRNA -144 44 1 1 799 24 0 0 0 chr12 28133848 28133872 -93123658 + AT_rich Low_complexity Low_complexity 1 24 0 1 799 286 309 0 0 chr12 28135381 28135462 -93122068 + CT-rich Low_complexity Low_complexity 3 83 0 1 799 215 58 55 55 chr12 28136083 28136138 -93121392 + CT-rich Low_complexity Low_complexity 1 55 0 1 799 420 20 0 0 chr12 28136617 28136666 -93120864 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 799 700 102 38 13 chr12 28136663 28136822 -93120708 + (CAGAGA)n Simple_repeat Simple_repeat 6 168 0 1 799 639 264 134 5 chr12 28137941 28138135 -93119395 + ID_B1 SINE B4 2 220 -4 1 799 10305 193 30 52 chr12 28138799 28141662 -93115868 + L1_Mur3 LINE L1 889 3638 -2502 1 799 383 277 0 0 chr12 28141661 28141744 -93115786 + Lx6 LINE L1 6281 6363 -687 1 799 1506 284 58 22 chr12 28141741 28142302 -93115228 + Lx6 LINE L1 6506 7433 -27 1 799 315 71 0 0 chr12 28142365 28142407 -93115123 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 799 426 352 18 62 chr12 28142787 28143014 -93114516 + B4A SINE B4 3 219 -73 1 799 567 173 0 0 chr12 28143144 28143317 -93114213 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 799 185 65 0 31 chr12 28144223 28144255 -93113275 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 799 400 274 48 8 chr12 28144727 28144852 -93112678 - MTE2b LTR MaLR 0 379 250 1 799 255 350 96 6 chr12 28145119 28145297 -93112233 + RMER15 LTR ERVL 366 559 -16 1 799 180 200 0 0 chr12 28145710 28145750 -93111780 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 799 218 300 0 0 chr12 28145754 28145814 -93111716 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 1 799 586 363 39 14 chr12 28145816 28146101 -93111429 - B4A SINE B4 0 292 1 1 799 261 197 0 0 chr12 28147825 28147886 -93109644 + (CATA)n Simple_repeat Simple_repeat 4 64 0 1 799 342 0 0 0 chr12 28148443 28148481 -93109049 + (T)n Simple_repeat Simple_repeat 1 38 0 2 799 265 100 40 0 chr12 28148653 28148703 -93108827 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 799 789 323 72 11 chr12 28149050 28149145 -93108385 + L1MB4 LINE L1 5588 5692 -491 2 799 405 0 0 0 chr12 28149145 28149190 -93108340 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 799 820 318 43 8 chr12 28149190 28149563 -93107967 + L1MB4 LINE L1 5693 6084 -99 2 799 180 77 0 0 chr12 28151107 28151133 -93106397 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 799 261 329 13 13 chr12 28151359 28151436 -93106094 + RSINE1 SINE B4 1 77 -88 2 799 1068 283 71 36 chr12 28152602 28152939 -93104591 - MTE2b LTR MaLR -30 349 1 2 799 231 303 10 20 chr12 28154056 28154157 -93103373 - MLT1A LTR MaLR -270 104 5 2 799 733 290 27 40 chr12 28154518 28154741 -93102789 - B4A SINE B4 0 292 73 2 799 375 336 0 0 chr12 28154741 28154860 -93102670 + (TG)n Simple_repeat Simple_repeat 2 120 0 2 799 287 322 34 0 chr12 28154860 28154978 -93102552 - B4A SINE B4 -170 122 1 2 799 329 245 0 36 chr12 28155891 28156001 -93101529 + (TG)n Simple_repeat Simple_repeat 1 106 0 2 799 629 216 37 43 chr12 28156024 28156188 -93101342 - ID_B1 SINE B4 -8 216 54 2 799 618 109 0 0 chr12 28158465 28158557 -93098973 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 799 467 322 82 36 chr12 28159266 28159485 -93098045 + B4A SINE B4 1 229 -63 2 799 467 33 0 16 chr12 28159527 28159589 -93097941 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 799 493 247 17 11 chr12 28160263 28160380 -93097150 - B1_Mur1 SINE Alu -25 124 7 2 799 1454 137 23 113 chr12 28161725 28162079 -93095451 + RLTRETN_Mm LTR ERVK 1 322 0 2 799 188 167 0 0 chr12 28163254 28163284 -93094246 + MIRc SINE MIR 118 147 -121 2 799 648 70 0 0 chr12 28163301 28163387 -93094143 + (TC)n Simple_repeat Simple_repeat 2 87 0 2 799 297 75 0 0 chr12 28163387 28163426 -93094104 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 799 527 291 110 51 chr12 28163475 28163729 -93093801 - B4A SINE B4 -23 269 1 2 799 283 261 57 21 chr12 28164099 28164240 -93093290 + MER3 DNA MER1_type 17 162 -47 2 799 376 333 13 6 chr12 28164972 28165129 -93092401 + CT-rich Low_complexity Low_complexity 4 161 0 2 799 278 268 89 31 chr12 28165167 28165264 -93092266 - PB1D7 SINE Alu -16 104 3 2 799 3551 219 16 10 chr12 28166099 28166803 -93090727 + Lx5 LINE L1 6332 7039 -11 2 799 981 152 0 0 chr12 28166864 28167035 -93090495 + GA-rich Low_complexity Low_complexity 4 174 0 2 799 613 305 96 33 chr12 28167043 28167470 -93090060 + L1MA9 LINE L1 5556 6009 -303 2 799 258 288 0 0 chr12 28168843 28168902 -93088628 + MT2A LTR ERVL 63 121 -412 2 799 592 229 23 7 chr12 28169031 28169172 -93088358 + MTE2a LTR MaLR 218 357 -22 2 799 1106 250 135 3 chr12 28169444 28169769 -93087761 + ORR1D2 LTR MaLR 1 368 -2 2 799 351 105 0 0 chr12 28170048 28170105 -93087425 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 799 322 315 0 0 chr12 28170117 28170209 -93087321 - B2_Mm2 SINE B2 -102 93 2 2 799 513 0 0 0 chr12 28170362 28170419 -93087111 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 799 396 0 0 0 chr12 28171247 28171291 -93086239 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 799 265 274 0 0 chr12 28171633 28171706 -93085824 + B3 SINE B2 142 214 -2 2 799 2307 281 36 16 chr12 28171774 28172523 -93085007 + RCHARR1 DNA MER1_type 183 946 -28 2 799 588 281 47 67 chr12 28172551 28172848 -93084682 + B4A SINE B4 2 292 0 2 799 889 150 23 0 chr12 28172859 28173032 -93084498 + (CATA)n Simple_repeat Simple_repeat 2 178 0 2 799 613 269 34 47 chr12 28173422 28173729 -93083801 - MTEa LTR MaLR -14 365 4 2 799 501 277 33 8 chr12 28175851 28175971 -93081559 - RSINE1 SINE B4 -29 136 14 2 799 3533 202 85 17 chr12 28176013 28176897 -93080633 - RMER1B Other Other 0 1066 43 2 799 291 368 34 20 chr12 28177444 28177591 -93079939 + B4A SINE B4 1 149 -143 2 799 396 59 0 0 chr12 28177591 28177642 -93079888 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 799 506 258 0 32 chr12 28177645 28177769 -93079761 + B4A SINE B4 169 288 -4 2 799 952 151 6 6 chr12 28177842 28178022 -93079508 + GA-rich Low_complexity Low_complexity 1 180 0 2 799 639 0 0 0 chr12 28178322 28178393 -93079137 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 799 255 272 216 7 chr12 28178419 28178567 -93078963 - MLT2B2 LTR ERVL -8 554 376 2 800 504 0 0 0 chr12 28180731 28180787 -93076743 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 800 849 20 0 0 chr12 28181277 28181376 -93076154 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 2 800 1041 289 21 28 chr12 28183074 28183362 -93074168 + B4 SINE B4 3 288 -4 2 800 383 318 13 13 chr12 28183367 28183520 -93074010 + (CATATA)n Simple_repeat Simple_repeat 6 158 0 2 800 234 91 0 0 chr12 28183528 28183561 -93073969 + (CATG)n Simple_repeat Simple_repeat 1 33 0 2 800 432 0 0 0 chr12 28183589 28183637 -93073893 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 800 681 13 0 0 chr12 28184118 28184196 -93073334 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 800 766 244 43 158 chr12 28184566 28184984 -93072546 - MTEa LTR MaLR -7 372 3 2 800 575 280 4 123 chr12 28185020 28185264 -93072266 + ID_B1 SINE B4 1 215 -9 2 800 188 0 74 0 chr12 28186479 28186506 -93071024 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2 800 701 271 176 12 chr12 28186525 28186775 -93070755 + B4A SINE B4 2 292 0 2 800 468 0 0 0 chr12 28186796 28186848 -93070682 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 800 183 156 0 0 chr12 28187074 28187106 -93070424 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 800 233 231 19 0 chr12 28188430 28188492 -93069038 + PB1 SINE Alu 53 125 -2 2 800 1077 171 49 5 chr12 28188502 28188707 -93068823 + B3 SINE B2 3 216 0 2 800 219 36 0 0 chr12 28189524 28189552 -93067978 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 800 22 56 0 0 chr12 28190742 28190778 -93066752 + AT_rich Low_complexity Low_complexity 1 36 0 2 800 243 333 10 10 chr12 28190877 28190980 -93066550 + CT-rich Low_complexity Low_complexity 1 103 0 2 800 1707 198 111 13 chr12 28192771 28193150 -93064380 + MTD LTR MaLR 1 416 -3 2 800 641 154 6 0 chr12 28193567 28193729 -93063801 + (CA)n Simple_repeat Simple_repeat 2 164 0 2 800 308 270 55 102 chr12 28193845 28193871 -93063659 - B4 SINE B4 -117 175 143 2 800 196 30 61 0 chr12 28193871 28193904 -93063626 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 800 308 270 55 102 chr12 28193904 28194005 -93063525 - B4 SINE B4 -150 142 55 2 800 368 253 58 69 chr12 28194404 28194578 -93062952 - MLT1A LTR MaLR -50 315 144 2 800 6311 63 7 27 chr12 28194587 28195412 -93062118 - L1Md_F2 LINE L1 0 6582 5774 2 800 3184 92 1 6 chr12 28195412 28196045 -93061485 + L1Md_Gf LINE L1 697 1426 -4460 2 800 398 348 51 13 chr12 28196045 28196202 -93061328 - MLT1A LTR MaLR -193 181 19 2 800 551 230 323 0 chr12 28196699 28196860 -93060670 - ID_B1 SINE B4 -9 215 3 2 800 561 255 117 25 chr12 28197467 28197664 -93059866 + B3 SINE B2 1 215 -1 2 800 336 249 91 104 chr12 28198604 28198891 -93058639 + MER33 DNA MER1_type 19 301 -23 2 800 540 81 0 0 chr12 28199038 28199112 -93058418 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 800 297 0 0 0 chr12 28199112 28199144 -93058386 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 800 4966 64 8 0 chr12 28199163 28199791 -93057739 - L1_Mus3 LINE L1 -3 6635 6003 2 800 1087 275 7 14 chr12 28199814 28200098 -93057432 - B4A SINE B4 -8 284 3 2 800 521 337 49 53 chr12 28201490 28201753 -93055777 + B4A SINE B4 3 264 -28 2 800 278 123 18 0 chr12 28201753 28201810 -93055720 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 800 273 224 11 50 chr12 28201809 28201988 -93055542 + (CATATA)n Simple_repeat Simple_repeat 5 176 0 2 800 378 373 11 0 chr12 28201995 28202210 -93055320 + (CA)n Simple_repeat Simple_repeat 1 217 0 2 800 1244 26 7 0 chr12 28203315 28203467 -93054063 + (TTCTC)n Simple_repeat Simple_repeat 5 157 0 2 800 995 0 9 0 chr12 28203467 28203582 -93053948 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 2 800 182 171 24 0 chr12 28203591 28203632 -93053898 + (CATG)n Simple_repeat Simple_repeat 2 43 0 2 800 945 75 29 6 chr12 28203655 28203830 -93053700 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 800 466 235 441 10 chr12 28203855 28204059 -93053471 - B4A SINE B4 0 292 1 2 800 1166 62 0 0 chr12 28205073 28205217 -93052313 + B1_Mus1 SINE Alu 5 148 0 2 800 585 0 0 0 chr12 28208312 28208377 -93049153 + (TTTTA)n Simple_repeat Simple_repeat 2 66 0 2 800 386 291 111 0 chr12 28209577 28209694 -93047836 + RSINE1 SINE B4 3 132 -33 2 800 369 109 0 0 chr12 28209706 28209761 -93047769 + (TAAG)n Simple_repeat Simple_repeat 1 55 0 2 800 274 244 0 24 chr12 28210248 28210374 -93047156 + (TATATG)n Simple_repeat Simple_repeat 4 126 0 2 800 374 267 118 13 chr12 28211264 28211416 -93046114 + ORR1E LTR MaLR 20 187 -172 2 800 230 246 0 80 chr12 28211510 28211585 -93045945 + ORR1E LTR MaLR 311 379 0 2 800 2149 129 11 31 chr12 28211717 28212076 -93045454 + Lx3C LINE L1 6412 6763 -213 2 800 619 125 21 0 chr12 28212083 28212227 -93045303 + (TCTA)n Simple_repeat Simple_repeat 2 148 0 2 800 1040 151 61 10 chr12 28212242 28212463 -93045067 + Lx3C LINE L1 6759 7000 0 2 800 1376 244 46 25 chr12 28215400 28215766 -93041764 + ORR1D1 LTR MaLR 1 374 0 2 800 1335 67 27 22 chr12 28216313 28216496 -93041034 - B2_Mm2 SINE B2 -10 185 2 2 800 1861 176 53 55 chr12 28216927 28217306 -93040224 - ORR1C1 LTR MaLR 0 378 1 2 800 234 317 24 0 chr12 28217490 28217572 -93039958 - ORR1D2 LTR MaLR -2 377 294 3 800 599 191 60 4 chr12 28217685 28217824 -93039706 - ORR1D2 LTR MaLR -235 135 6 3 800 2018 303 70 16 chr12 28217824 28218553 -93038977 + Lx8 LINE L1 6379 7146 -327 3 800 618 247 60 6 chr12 28219129 28219296 -93038234 + MTEb LTR MaLR 2 177 -202 3 800 554 246 23 0 chr12 28219301 28219431 -93038099 + B1_Mur2 SINE Alu 3 135 -14 3 800 402 215 0 23 chr12 28219434 28219567 -93037963 + GA-rich Low_complexity Low_complexity 2 131 0 3 800 298 298 106 0 chr12 28219601 28219695 -93037835 + RSINE1 SINE B4 15 118 -47 3 800 465 19 0 0 chr12 28219697 28219751 -93037779 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 800 331 264 199 0 chr12 28219772 28219938 -93037592 + MTEb LTR MaLR 171 364 -15 3 800 519 167 0 10 chr12 28220564 28220661 -93036869 - B1_Mus2 SINE Alu -6 141 46 3 800 262 360 38 71 chr12 28220661 28220927 -93036603 - Lx8 LINE L1 -30 7443 7187 3 800 2085 33 0 0 chr12 28220991 28221234 -93036296 - L1Md_A LINE L1 -2 6580 6338 3 800 25 0 0 0 chr12 28221362 28221387 -93036143 + AT_rich Low_complexity Low_complexity 1 25 0 3 800 271 188 29 0 chr12 28222887 28222956 -93034574 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 3 800 225 0 0 0 chr12 28222959 28222984 -93034546 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 800 450 0 0 0 chr12 28223922 28223972 -93033558 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 800 237 209 30 0 chr12 28223975 28224042 -93033488 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 800 1143 56 7 0 chr12 28224114 28224258 -93033272 + B1_Mm SINE Alu 3 147 0 3 800 311 74 0 36 chr12 28224259 28224315 -93033215 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 3 800 1048 236 128 22 chr12 28224883 28225204 -93032326 - Lx8 LINE L1 -146 7327 6973 3 800 621 301 29 103 chr12 28225835 28226146 -93031384 + ORR1E LTR MaLR 53 340 -19 3 800 938 261 132 41 chr12 28227884 28228203 -93029327 + ORR1E LTR MaLR 1 348 -11 3 800 180 0 0 0 chr12 28228592 28228612 -93028918 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 800 10290 88 14 10 chr12 28228959 28230376 -93027154 - Lx3_Mus LINE L1 0 7009 5587 3 800 3867 72 35 2 chr12 28230374 28230891 -93026639 + Lx3_Mus LINE L1 5052 5585 -301 3 800 687 284 51 8 chr12 28231557 28231791 -93025739 + B4 SINE B4 5 248 -44 3 800 351 0 0 0 chr12 28233433 28233472 -93024058 + (TTG)n Simple_repeat Simple_repeat 1 39 0 3 800 756 0 0 0 chr12 28233472 28233556 -93023974 + (TTC)n Simple_repeat Simple_repeat 1 84 0 3 800 836 129 20 41 chr12 28233560 28233706 -93023824 - B1_Mur4 SINE Alu -6 144 2 3 800 495 0 0 0 chr12 28233724 28233779 -93023751 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 3 800 1521 214 23 43 chr12 28233779 28234126 -93023404 - Lx4B LINE L1 -5 7053 6714 3 800 333 164 0 95 chr12 28234129 28234203 -93023327 + Lx4B LINE L1 6650 6716 -342 3 800 381 244 108 29 chr12 28234317 28234456 -93023074 - B4A SINE B4 -88 204 55 3 800 460 294 127 37 chr12 28235084 28235388 -93022142 + ORR1E LTR MaLR 3 354 -25 3 800 208 250 18 0 chr12 28235477 28235533 -93021997 + GA-rich Low_complexity Low_complexity 1 57 0 3 800 423 322 97 42 chr12 28235604 28235915 -93021615 + L1M5 LINE L1 2760 3087 -3059 3 800 874 169 0 0 chr12 28236384 28236520 -93021010 + B1_Mur3 SINE Alu 2 137 -12 3 800 1233 68 0 0 chr12 28236520 28236697 -93020833 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 3 800 222 136 0 0 chr12 28236697 28236741 -93020789 + (CATA)n Simple_repeat Simple_repeat 1 44 0 3 800 267 54 0 0 chr12 28237527 28237564 -93019966 + (CAAG)n Simple_repeat Simple_repeat 3 39 0 3 800 207 0 0 0 chr12 28237577 28237600 -93019930 + (CCA)n Simple_repeat Simple_repeat 3 25 0 3 800 231 211 18 0 chr12 28237668 28237725 -93019805 + Lx8 LINE L1 7416 7473 0 3 800 282 288 0 70 chr12 28238469 28238555 -93018975 - Lx8 LINE L1 -329 7144 7065 3 800 374 312 0 31 chr12 28240472 28240601 -93016929 + ID_B1 SINE B4 1 125 -99 3 800 420 317 52 14 chr12 28241022 28241239 -93016291 + ORR1E LTR MaLR 1 218 -156 3 800 8370 40 1 5 chr12 28241621 28242661 -93014869 - L1Md_F2 LINE L1 0 6582 5548 3 800 28 0 0 0 chr12 28242938 28242966 -93014564 + AT_rich Low_complexity Low_complexity 1 28 0 3 800 1169 233 114 50 chr12 28243785 28244009 -93013521 + ORR1C2 LTR MaLR 1 237 -147 3 800 4315 147 30 16 chr12 28244009 28244429 -93013101 - RMER6A LTR ERVK 0 756 323 3 800 972 0 0 0 chr12 28244429 28244537 -93012993 + (TC)n Simple_repeat Simple_repeat 1 108 0 3 800 4315 147 30 16 chr12 28244537 28244862 -93012668 - RMER6A LTR ERVK -434 322 2 3 800 1169 233 114 50 chr12 28244862 28244998 -93012532 + ORR1C2 LTR MaLR 238 384 0 3 800 543 213 8 8 chr12 28246179 28246302 -93011228 - ORR1D1 LTR MaLR -251 123 1 3 800 314 276 88 22 chr12 28246864 28247001 -93010529 + MERVL_2A-int LTR ERVL 4525 4670 -1091 3 800 250 254 0 40 chr12 28247781 28247855 -93009675 + PB1D10 SINE Alu 11 81 -36 3 800 224 292 40 40 chr12 28247855 28247906 -93009624 + ID_B1 SINE B4 92 216 -8 3 800 315 0 0 0 chr12 28247987 28248022 -93009508 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 800 183 42 0 0 chr12 28248682 28248706 -93008824 + (TAA)n Simple_repeat Simple_repeat 1 24 0 3 800 404 172 11 0 chr12 28249501 28249588 -93007942 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 800 183 42 0 0 chr12 28250322 28250346 -93007184 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 800 1174 279 85 112 chr12 28253482 28253640 -93003890 - L1MA6 LINE L1 -6 6294 6132 3 800 278 19 35 53 chr12 28253640 28253697 -93003833 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 3 800 1143 50 0 0 chr12 28253699 28253838 -93003692 - B1_Mus1 SINE Alu -8 140 2 3 800 1174 279 85 112 chr12 28253838 28253859 -93003671 - L1MA6 LINE L1 -169 6131 6123 3 800 1094 218 0 27 chr12 28253859 28254081 -93003449 - B3 SINE B2 0 216 1 3 800 1174 279 85 112 chr12 28254081 28254775 -93002755 - L1MA6 LINE L1 -178 6122 5440 3 800 2421 111 61 3 chr12 28255089 28255468 -93002062 - Lx3A LINE L1 0 6981 6581 3 800 513 0 0 0 chr12 28255584 28255641 -93001889 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 800 711 116 0 0 chr12 28256095 28256207 -93001323 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 3 800 777 238 0 0 chr12 28256211 28256358 -93001172 - B1_Mur3 SINE Alu 0 149 3 3 800 1313 308 130 33 chr12 28257493 28258186 -92999344 + Lx8 LINE L1 6713 7472 -1 3 800 234 210 132 24 chr12 28258557 28258640 -92998890 + ORR1E LTR MaLR 1 92 -267 3 800 180 0 0 0 chr12 28259136 28259156 -92998374 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 800 931 239 64 5 chr12 28259156 28259375 -92998155 - B4A SINE B4 -33 259 28 3 800 3392 122 34 19 chr12 28259599 28260135 -92997395 + Lx LINE L1 6104 6647 -7 3 800 554 277 26 32 chr12 28260171 28260361 -92997169 - B3A SINE B2 -4 194 6 3 800 352 349 8 0 chr12 28260720 28260852 -92996678 + MER94 DNA AcHobo 1 133 -1 3 800 224 235 20 0 chr12 28261509 28261560 -92995970 + GA-rich Low_complexity Low_complexity 3 54 0 3 800 303 28 0 0 chr12 28262153 28262189 -92995341 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 800 228 67 0 0 chr12 28262199 28262229 -92995301 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 800 849 28 0 0 chr12 28262301 28262409 -92995121 - B1_Mm SINE Alu 0 147 40 3 800 306 0 0 0 chr12 28262487 28262521 -92995009 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 800 334 192 10 29 chr12 28262820 28262922 -92994608 + (TTAGGG)n Simple_repeat Simple_repeat 5 104 0 3 800 195 218 0 0 chr12 28262982 28263037 -92994493 + (TTAGGG)n Simple_repeat Simple_repeat 5 59 0 3 800 600 135 0 0 chr12 28263174 28263285 -92994245 + (TTAGGG)n Simple_repeat Simple_repeat 4 114 0 3 800 1558 241 50 12 chr12 28263448 28263852 -92993678 + MTD LTR MaLR 1 419 0 3 800 243 370 32 11 chr12 28264112 28264298 -92993232 + L3 LINE CR1 4125 4314 -175 3 800 597 310 45 47 chr12 28266893 28267252 -92990278 + MT2A LTR ERVL 103 460 -73 3 800 600 299 54 15 chr12 28267442 28267646 -92989884 - B3 SINE B2 0 216 5 3 800 194 207 17 0 chr12 28267728 28267786 -92989744 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 3 800 229 287 23 11 chr12 28269077 28269165 -92988365 + (TATG)n Simple_repeat Simple_repeat 2 90 0 3 800 198 0 0 0 chr12 28269240 28269262 -92988268 + (T)n Simple_repeat Simple_repeat 1 22 0 3 800 595 276 72 30 chr12 28269277 28269539 -92987991 - B4A SINE B4 -18 274 2 3 800 294 197 45 15 chr12 28269680 28269747 -92987783 + B3A SINE B2 80 148 -50 3 800 5782 70 27 3 chr12 28269778 28270528 -92987002 + Lx3_Mus LINE L1 6242 7009 0 3 800 341 286 8 43 chr12 28270905 28271022 -92986508 - PB1D7 SINE Alu -6 114 2 3 800 396 0 0 0 chr12 28271687 28271731 -92985799 + (TTA)n Simple_repeat Simple_repeat 1 44 0 3 800 1052 71 0 0 chr12 28272440 28272581 -92984949 - B1_Mus1 SINE Alu 0 148 8 3 800 588 40 0 0 chr12 28273176 28273251 -92984279 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 800 297 300 0 22 chr12 28273251 28273343 -92984187 + (CATA)n Simple_repeat Simple_repeat 3 92 0 3 800 273 197 0 0 chr12 28273345 28273411 -92984119 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 800 1056 251 143 0 chr12 28273417 28273732 -92983798 + MTD LTR MaLR 14 373 -46 3 800 335 394 47 0 chr12 28274239 28274475 -92983055 + MLT1E2 LTR MaLR 230 476 -151 3 800 387 0 0 0 chr12 28275268 28275311 -92982219 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 800 8629 34 0 3 chr12 28275384 28276664 -92980866 - L1Md_F2 LINE L1 -4 6578 5305 3 800 2720 86 45 110 chr12 28276664 28277172 -92980358 + IAPLTR2_Mm LTR ERVK 1 475 0 3 800 5172 35 2 11 chr12 28277172 28277202 -92980328 - L1Md_F2 LINE L1 -579 5304 5274 3 800 180 337 112 0 chr12 28277353 28277442 -92980088 + MIRc SINE MIR 121 219 -49 3 800 22 0 0 0 chr12 28277584 28277606 -92979924 + AT_rich Low_complexity Low_complexity 1 22 0 3 800 1168 48 14 0 chr12 28279273 28279418 -92978112 + B1_Mus1 SINE Alu 2 148 0 3 800 547 248 18 53 chr12 28279707 28279877 -92977653 + Lx7 LINE L1 7204 7367 -329 4 800 215 236 0 0 chr12 28279886 28279941 -92977589 + T-rich Low_complexity Low_complexity 6 60 0 4 800 285 313 0 0 chr12 28279941 28280024 -92977506 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 800 1259 191 44 34 chr12 28280024 28280322 -92977208 + Lx7 LINE L1 7396 7696 0 4 800 305 131 0 16 chr12 28281470 28281532 -92975998 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 800 308 267 50 33 chr12 28283246 28283366 -92974164 + B1F SINE Alu 20 141 -8 4 800 720 0 0 0 chr12 28285197 28285277 -92972253 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 800 2048 64 0 8 chr12 28285310 28285576 -92971954 - L1Md_F2 LINE L1 -3 6579 6316 4 800 196 339 119 10 chr12 28285968 28286162 -92971368 + L2 LINE L2 1920 2134 -1285 4 800 22 35 0 0 chr12 28287127 28287156 -92970374 + AT_rich Low_complexity Low_complexity 1 29 0 4 800 656 268 40 45 chr12 28287437 28287636 -92969894 - B3A SINE B2 0 198 1 4 800 425 79 11 89 chr12 28287688 28287799 -92969731 - ORR1A1 LTR MaLR 0 394 272 4 800 243 235 14 42 chr12 28288122 28288193 -92969337 + MTEa LTR MaLR 288 356 -23 4 800 297 240 28 74 chr12 28288318 28288426 -92969104 + MTE-int LTR MaLR 399 501 -1079 4 800 318 50 0 0 chr12 28288515 28288555 -92968975 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 800 2092 274 79 34 chr12 28289028 28289775 -92967755 + MTE-int LTR MaLR 759 1539 -41 4 800 858 255 19 14 chr12 28290306 28290513 -92967017 + B3 SINE B2 9 216 0 4 800 1068 286 104 6 chr12 28290747 28291074 -92966456 + MTD LTR MaLR 43 401 -18 4 800 1315 254 88 5 chr12 28291111 28291576 -92965954 + L1_Mur3 LINE L1 4444 4950 -1193 4 800 26 74 0 0 chr12 28291730 28291784 -92965746 + AT_rich Low_complexity Low_complexity 1 54 0 4 800 404 223 179 22 chr12 28293204 28293470 -92964060 + MTEa LTR MaLR 4 374 -5 4 800 210 268 84 0 chr12 28293558 28293629 -92963901 - B1F SINE Alu -34 115 39 4 800 28 0 0 0 chr12 28294568 28294596 -92962934 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 1829 141 42 0 chr12 28294927 28295233 -92962297 - ORR1A2 LTR MaLR -8 319 1 4 800 290 312 79 28 chr12 28295793 28295971 -92961559 - Tigger7 DNA MER2_type -4 2487 2301 4 800 390 290 0 0 chr12 28295975 28296082 -92961448 - Tigger7 DNA MER2_type -2376 115 9 4 800 1542 204 73 35 chr12 28296521 28296702 -92960828 + ORR1C2 LTR MaLR 1 173 -211 4 800 1424 7 30 0 chr12 28296702 28297005 -92960525 + (TCTA)n Simple_repeat Simple_repeat 1 312 0 4 800 1542 204 73 35 chr12 28297005 28297189 -92960341 + ORR1C2 LTR MaLR 174 381 -3 4 800 444 347 90 90 chr12 28297301 28297589 -92959941 - B4 SINE B4 0 292 5 4 800 180 0 0 0 chr12 28298012 28298032 -92959498 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 800 4870 99 54 11 chr12 28298032 28298739 -92958791 - Lx3_Mus LINE L1 -18 6991 6255 4 800 889 314 8 8 chr12 28300007 28300245 -92957285 - B4 SINE B4 -2 290 53 4 800 623 182 107 8 chr12 28300982 28301104 -92956426 + B3 SINE B2 1 134 -82 4 800 404 51 0 17 chr12 28301109 28301169 -92956361 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 800 262 221 21 0 chr12 28302030 28302125 -92955405 + (TG)n Simple_repeat Simple_repeat 2 98 0 4 800 365 332 99 43 chr12 28302132 28302365 -92955165 - B4A SINE B4 -4 288 43 4 800 1621 109 107 25 chr12 28302982 28303263 -92954267 + Lx2 LINE L1 6693 6996 -1 4 800 319 247 208 31 chr12 28303589 28303748 -92953782 - RMER15 LTR ERVL -44 531 345 4 800 27 0 0 0 chr12 28303750 28303777 -92953753 + AT_rich Low_complexity Low_complexity 1 27 0 4 800 3173 32 0 0 chr12 28303820 28304189 -92953341 - L1Md_T LINE L1 0 6582 6214 4 800 916 193 126 5 chr12 28305772 28305970 -92951560 + URR1A DNA MER1_type 5 226 0 4 800 430 275 67 101 chr12 28306090 28306268 -92951262 - B4A SINE B4 -120 172 1 4 800 28 0 0 0 chr12 28307244 28307272 -92950258 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 1001 271 32 39 chr12 28307680 28307964 -92949566 - B4A SINE B4 -10 282 1 4 800 270 212 76 0 chr12 28307978 28308044 -92949486 - RSINE1 SINE B4 -93 72 2 4 800 741 23 0 0 chr12 28308200 28308287 -92949243 + (TC)n Simple_repeat Simple_repeat 2 88 0 4 800 219 136 14 57 chr12 28308510 28308580 -92948950 + CT-rich Low_complexity Low_complexity 4 70 0 4 800 3030 53 50 13 chr12 28309115 28309497 -92948033 + MTA_Mm LTR MaLR 1 396 0 4 800 1876 154 6 27 chr12 28310350 28310684 -92946846 + ORR1B2 LTR MaLR 1 327 -40 4 800 31 0 0 0 chr12 28310696 28310727 -92946803 + AT_rich Low_complexity Low_complexity 1 31 0 4 800 230 154 7 40 chr12 28310727 28310801 -92946729 + ORR1B2 LTR MaLR 299 394 0 4 800 265 317 24 0 chr12 28311035 28311158 -92946372 - Cheshire DNA MER1_type -2141 279 154 4 800 283 221 0 14 chr12 28311333 28311402 -92946128 - L1MA8 LINE L1 -30 6261 6194 4 800 246 62 0 0 chr12 28311408 28311440 -92946090 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 801 571 327 47 44 chr12 28312392 28312667 -92944863 + B4 SINE B4 2 277 -15 4 801 356 314 54 39 chr12 28315169 28315293 -92942237 + B1F SINE Alu 5 127 -23 4 801 543 16 0 0 chr12 28315296 28315360 -92942170 + (CCA)n Simple_repeat Simple_repeat 1 64 0 4 801 332 302 12 36 chr12 28315386 28315551 -92941979 + GA-rich Low_complexity Low_complexity 4 164 0 4 801 717 168 13 6 chr12 28315565 28315721 -92941809 + GA-rich Low_complexity Low_complexity 5 161 0 4 801 384 242 22 0 chr12 28317164 28317255 -92940275 + RMER1B Other Other 45 137 -929 4 801 1661 215 59 3 chr12 28317250 28317605 -92939925 + RMER1B Other Other 678 1052 -14 4 801 189 107 0 0 chr12 28317605 28317633 -92939897 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 801 587 291 45 29 chr12 28317702 28317946 -92939584 - B4 SINE B4 -2 290 43 4 801 402 21 0 0 chr12 28318551 28318598 -92938932 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 801 759 265 132 16 chr12 28318608 28318865 -92938665 + B4 SINE B4 3 289 -3 4 801 530 260 83 39 chr12 28318900 28319080 -92938450 - B3A SINE B2 -10 188 1 4 801 340 316 186 9 chr12 28319084 28319293 -92938237 + MTE2b LTR MaLR 5 238 -141 4 801 777 73 0 0 chr12 28319293 28319402 -92938128 + (TC)n Simple_repeat Simple_repeat 2 110 0 4 801 340 296 243 8 chr12 28319402 28319508 -92938022 + MTE2b LTR MaLR 239 348 -31 4 801 1295 191 94 72 chr12 28319733 28320106 -92937424 + RMER10B LTR ERVL 1 381 -17 4 801 423 0 0 0 chr12 28320106 28320153 -92937377 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 4 801 180 0 0 0 chr12 28320242 28320262 -92937268 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 801 714 175 46 46 chr12 28320474 28320648 -92936882 - ORR1D2 LTR MaLR 0 370 197 4 801 3837 212 89 29 chr12 28320661 28321616 -92935914 - Lx2B LINE L1 -10 6990 5979 4 801 321 299 28 174 chr12 28321778 28321832 -92935698 - ORR1D2 LTR MaLR -218 152 97 4 801 423 0 0 0 chr12 28321832 28321879 -92935651 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 801 321 299 28 174 chr12 28321879 28321907 -92935623 - ORR1D2 LTR MaLR -274 96 96 4 801 1057 74 18 6 chr12 28321907 28322070 -92935460 - L1_Mus3 LINE L1 0 6638 6474 4 801 321 299 28 174 chr12 28322070 28322164 -92935366 - ORR1D2 LTR MaLR -274 96 1 4 801 321 156 39 0 chr12 28322733 28322810 -92934720 + CT-rich Low_complexity Low_complexity 3 82 0 4 801 246 333 0 0 chr12 28323862 28323943 -92933587 + ID4 SINE ID 3 83 0 4 801 1130 171 48 0 chr12 28324021 28324231 -92933299 - URR1A DNA MER1_type 0 226 7 4 801 990 300 81 19 chr12 28324867 28325619 -92931911 + L1M3 LINE L1 4806 5612 -700 4 801 3062 61 8 10 chr12 28325619 28326016 -92931514 + L1Md_F2 LINE L1 6187 6582 0 4 801 990 307 31 16 chr12 28326016 28326098 -92931432 + L1M3 LINE L1 5613 5691 -621 4 801 181 0 0 65 chr12 28327771 28327802 -92929728 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 801 183 80 0 0 chr12 28328771 28328796 -92928734 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 4 801 205 194 0 0 chr12 28328808 28328844 -92928686 + CT-rich Low_complexity Low_complexity 1 36 0 4 801 465 252 8 52 chr12 28328847 28328981 -92928549 - B1_Mur2 SINE Alu -21 128 1 4 801 594 272 44 66 chr12 28328982 28329210 -92928320 - B4 SINE B4 -64 228 6 4 801 513 301 85 37 chr12 28330866 28331138 -92926392 + B4 SINE B4 8 292 0 4 801 4665 40 0 5 chr12 28332417 28332971 -92924559 - L1Md_F2 LINE L1 -12 6570 6020 4 801 480 35 0 0 chr12 28335057 28335115 -92922415 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 801 349 349 89 18 chr12 28335117 28335286 -92922244 - B3 SINE B2 -34 182 2 4 801 228 284 15 0 chr12 28336567 28336634 -92920896 - B4A SINE B4 -224 68 1 4 801 219 269 0 0 chr12 28337986 28338127 -92919403 + (CA)n Simple_repeat Simple_repeat 2 142 0 4 801 674 184 6 0 chr12 28338164 28338338 -92919192 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 801 288 233 25 17 chr12 28339787 28339905 -92917625 + (CAAA)n Simple_repeat Simple_repeat 2 120 0 4 801 560 178 40 83 chr12 28340467 28340638 -92916892 - ORR1C2 LTR MaLR -244 140 1 4 801 250 264 42 68 chr12 28341146 28341264 -92916266 + Lx6 LINE L1 7303 7417 -43 4 801 21 0 0 0 chr12 28341284 28341305 -92916225 + AT_rich Low_complexity Low_complexity 1 21 0 4 801 2114 176 6 3 chr12 28341324 28341689 -92915841 + ORR1C1 LTR MaLR 13 378 0 4 801 1100 273 21 14 chr12 28341927 28342213 -92915317 - B4 SINE B4 -4 288 1 4 801 252 241 17 0 chr12 28343858 28343916 -92913614 + B1F SINE Alu 82 140 -9 4 801 228 67 0 0 chr12 28343922 28343952 -92913578 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4 801 271 274 0 95 chr12 28344259 28344364 -92913166 - ID_B1 SINE B4 -18 206 112 4 801 273 247 49 49 chr12 28344298 28344379 -92913151 - PB1D10 SINE Alu -30 97 17 4 801 471 35 0 0 chr12 28345061 28345118 -92912412 + (TAA)n Simple_repeat Simple_repeat 2 58 0 4 801 924 274 48 114 chr12 28346552 28346948 -92910582 - MTE2a LTR MaLR -1 378 9 4 801 275 268 0 40 chr12 28347157 28347231 -92910299 - Charlie12 DNA MER1_type -3 2870 2800 4 801 276 273 38 115 chr12 28347267 28347424 -92910106 + RMER30 DNA MER1_type 14 158 -44 4 801 207 0 0 0 chr12 28347959 28347982 -92909548 + (T)n Simple_repeat Simple_repeat 1 23 0 5 801 556 290 30 71 chr12 28351162 28351265 -92906265 + RMER30 DNA MER1_type 12 106 -96 5 801 911 74 15 15 chr12 28351265 28351402 -92906128 - L1_Mus3 LINE L1 -5 6633 6497 5 801 556 290 30 71 chr12 28351402 28351495 -92906035 + RMER30 DNA MER1_type 107 200 -2 5 801 499 151 0 63 chr12 28351816 28352007 -92905523 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 5 801 402 21 0 0 chr12 28352007 28352054 -92905476 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 801 346 263 0 39 chr12 28352405 28352508 -92905022 - Lx7 LINE L1 -364 7332 7234 5 801 663 262 12 6 chr12 28353112 28353277 -92904253 + MLT2B4 LTR ERVL 1 166 -390 5 801 290 47 0 44 chr12 28354799 28354844 -92902686 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 801 1975 185 162 16 chr12 28357000 28357375 -92900155 + RLTR11A LTR ERVK 19 447 -81 5 801 513 0 0 0 chr12 28357375 28357432 -92900098 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 801 1975 185 162 16 chr12 28357432 28357501 -92900029 + RLTR11A LTR ERVK 448 527 -1 5 801 390 363 6 0 chr12 28357552 28357709 -92899821 + (TCCA)n Simple_repeat Simple_repeat 1 158 0 5 801 310 333 21 0 chr12 28357736 28357880 -92899650 + (TCCA)n Simple_repeat Simple_repeat 3 149 0 5 801 495 0 0 0 chr12 28359175 28359230 -92898300 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 801 926 158 11 0 chr12 28360730 28360907 -92896623 + CT-rich Low_complexity Low_complexity 2 180 0 5 801 329 45 23 0 chr12 28360907 28360951 -92896579 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 801 450 0 0 0 chr12 28360960 28361010 -92896520 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 801 539 310 25 13 chr12 28361016 28361173 -92896357 - B3A SINE B2 -34 164 6 5 801 1080 31 0 0 chr12 28361716 28361845 -92895685 - L1_Mus2 LINE L1 -606 5960 5832 5 801 1677 98 0 26 chr12 28361845 28362075 -92895455 + L1_Mus2 LINE L1 6341 6564 -2 5 801 735 42 0 0 chr12 28362085 28362180 -92895350 + (GAA)n Simple_repeat Simple_repeat 1 95 0 5 801 1073 275 35 45 chr12 28362225 28362618 -92894912 + MTE2a LTR MaLR 5 404 -15 5 801 1185 106 0 0 chr12 28363336 28363516 -92894014 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 801 984 155 0 0 chr12 28363520 28363786 -92893744 + CT-rich Low_complexity Low_complexity 1 266 0 5 801 217 250 0 29 chr12 28364426 28364496 -92893034 + GA-rich Low_complexity Low_complexity 1 68 0 5 801 231 242 60 15 chr12 28365007 28365074 -92892456 + Lx8 LINE L1 7139 7208 -265 5 801 708 274 21 41 chr12 28365323 28365517 -92892013 + MTD-int LTR MaLR 1023 1212 -368 5 801 685 321 159 57 chr12 28365532 28366339 -92891191 - Lx8 LINE L1 -827 6646 5757 5 801 252 366 11 11 chr12 28366343 28366437 -92891093 + MTD-int LTR MaLR 1481 1574 -6 5 801 957 303 119 6 chr12 28366461 28366813 -92890717 + MTD LTR MaLR 26 417 -2 5 801 1469 220 3 3 chr12 28368592 28368889 -92888641 + Lx4B LINE L1 5381 5677 -200 5 801 561 30 0 0 chr12 28368924 28368991 -92888539 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 801 7754 85 3 0 chr12 28368993 28370488 -92887042 - L1_Mus1 LINE L1 -6 6561 5062 5 801 1676 204 55 0 chr12 28370487 28370831 -92886699 + Lx4B LINE L1 6035 6397 -661 5 801 311 224 20 8 chr12 28370831 28370963 -92886567 + RMER13B LTR ERVK 743 899 -9 5 801 12334 171 98 35 chr12 28370974 28374252 -92883278 + Lx5 LINE L1 3325 6837 -213 5 801 304 280 81 99 chr12 28374793 28374904 -92882626 - PB1D10 SINE Alu -1 116 8 5 801 21 0 0 0 chr12 28374912 28374933 -92882597 + AT_rich Low_complexity Low_complexity 1 21 0 5 801 423 342 52 32 chr12 28375053 28375207 -92882323 - RSINE1 SINE B4 0 165 9 5 801 1127 112 0 11 chr12 28375241 28375421 -92882109 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 801 1368 67 0 0 chr12 28375425 28375605 -92881925 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 801 215 154 0 37 chr12 28375606 28375646 -92881884 + CT-rich Low_complexity Low_complexity 15 52 0 5 801 1357 44 0 16 chr12 28375646 28375829 -92881701 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 801 215 154 0 37 chr12 28375829 28375842 -92881688 + polypyrimidine Low_complexity Low_complexity 2 14 0 5 801 1021 128 0 16 chr12 28375842 28376024 -92881506 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 801 1128 44 0 82 chr12 28376025 28376172 -92881358 - B1_Mus1 SINE Alu -12 136 2 5 801 540 279 160 16 chr12 28376182 28376619 -92880911 - L1Md_F2 LINE L1 -1498 4648 4149 5 801 33831 72 2 5 chr12 28376620 28381900 -92875630 + L1Md_F2 LINE L1 228 5589 -297 5 801 8310 57 4 2 chr12 28381900 28382894 -92874636 + L1Md_F2 LINE L1 5590 6585 0 5 801 392 307 62 79 chr12 28383023 28383377 -92874153 - L1Md_F2 LINE L1 -2229 3917 3570 5 801 8107 150 61 54 chr12 28383436 28386518 -92871012 - L1Md_F2 LINE L1 -12 6570 3558 5 801 408 113 0 0 chr12 28386518 28386571 -92870959 + B1_Mus1 SINE Alu 13 65 -83 5 801 8107 150 61 54 chr12 28386571 28389719 -92867811 - L1Md_F2 LINE L1 -12 3557 479 5 801 621 325 30 0 chr12 28390136 28390302 -92867228 + B3A SINE B2 3 173 -25 5 801 729 53 0 0 chr12 28390309 28390403 -92867127 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 801 25406 137 15 12 chr12 28390534 28396460 -92861070 - L1_Mus3 LINE L1 -2 6636 693 5 801 240 59 0 0 chr12 28396606 28396640 -92860890 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 801 1059 142 0 0 chr12 28396640 28396816 -92860714 + (GGAGAA)n Simple_repeat Simple_repeat 2 177 0 5 801 2095 184 69 15 chr12 28397180 28397571 -92859959 - MTC LTR MaLR -8 413 2 5 801 5579 183 83 17 chr12 28397571 28398745 -92858785 - MTC-int LTR MaLR -7 1251 1 5 801 1840 181 53 20 chr12 28398745 28398780 -92858750 - MTC LTR MaLR 0 407 374 5 801 456 19 0 0 chr12 28398780 28398833 -92858697 + (TAA)n Simple_repeat Simple_repeat 3 55 0 5 801 1840 181 53 20 chr12 28398833 28399191 -92858339 - MTC LTR MaLR -34 373 2 5 801 1951 190 22 54 chr12 28399565 28399972 -92857558 - ORR1B1 LTR MaLR 0 394 1 5 801 445 208 121 30 chr12 28399972 28400070 -92857460 - MTE2b LTR MaLR -60 319 213 5 801 1091 83 0 6 chr12 28400243 28400400 -92857130 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 5 801 27524 111 12 12 chr12 28400402 28406746 -92850784 - L1_Mus2 LINE L1 0 6566 409 5 801 216 235 0 0 chr12 28407276 28407327 -92850203 + B4 SINE B4 8 58 -234 5 801 1980 187 70 22 chr12 28408145 28408516 -92849014 + MTC LTR MaLR 1 389 -32 5 801 202 29 0 54 chr12 28409525 28409562 -92847968 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 801 235 290 49 84 chr12 28410096 28410239 -92847291 - YREP_Mm Unknown Unknown -1469 343 206 5 801 603 219 85 8 chr12 28410132 28410261 -92847269 + ID_B1 SINE B4 86 224 0 5 801 2579 243 58 107 chr12 28411278 28411511 -92846019 - Lx9 LINE L1 -15 7629 7366 5 801 1797 188 116 5 chr12 28411511 28411890 -92845640 + MTC LTR MaLR 1 421 0 5 801 2579 243 58 107 chr12 28411890 28412255 -92845275 - Lx9 LINE L1 -279 7365 7055 5 801 2146 82 3 0 chr12 28412255 28412549 -92844981 + L1_Mus2 LINE L1 6272 6566 0 5 801 2579 243 58 107 chr12 28412549 28413062 -92844468 - Lx9 LINE L1 -590 7054 6571 5 801 264 253 91 91 chr12 28413066 28413362 -92844168 + L1MC5 LINE L1 6900 7195 -766 5 801 28 61 0 0 chr12 28413414 28413463 -92844067 + AT_rich Low_complexity Low_complexity 1 49 0 5 801 689 312 53 46 chr12 28415068 28415330 -92842200 + B4A SINE B4 6 269 -23 5 801 6077 106 11 7 chr12 28415540 28416415 -92841115 + Lx3A LINE L1 6102 6980 -1 5 801 515 277 41 170 chr12 28416570 28416928 -92840602 + MTD LTR MaLR 25 363 -56 5 801 1348 86 32 0 chr12 28416928 28417114 -92840416 - B2_Mm2 SINE B2 -3 192 1 5 801 515 248 15 88 chr12 28417114 28417160 -92840370 + MTD LTR MaLR 333 405 -14 5 801 1775 192 114 5 chr12 28417636 28418012 -92839518 - MTD LTR MaLR 0 419 3 5 801 504 77 0 0 chr12 28418395 28418473 -92839057 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 801 628 302 112 33 chr12 28418535 28418864 -92838666 + ORR1E LTR MaLR 5 359 0 5 801 2970 50 50 0 chr12 28419078 28419455 -92838075 - MTA_Mm LTR MaLR 0 396 1 5 801 8343 58 17 11 chr12 28419455 28420546 -92836984 - MTA_Mm-int LTR MaLR 0 1098 1 5 801 3230 43 8 0 chr12 28420546 28420939 -92836591 - MTA_Mm LTR MaLR 0 396 1 5 801 370 62 0 44 chr12 28421463 28421531 -92835999 + (TTG)n Simple_repeat Simple_repeat 2 66 0 5 801 4455 37 16 2 chr12 28422279 28422854 -92834676 + L1Md_F2 LINE L1 5004 5586 -297 5 801 8038 50 0 1 chr12 28422855 28423837 -92833693 + L1Md_F2 LINE L1 5588 6568 -14 5 801 329 222 10 0 chr12 28424134 28424233 -92833297 + (TG)n Simple_repeat Simple_repeat 2 101 0 5 801 797 324 3 55 chr12 28424242 28424549 -92832981 - B4 SINE B4 0 292 2 5 801 564 267 11 125 chr12 28424710 28424894 -92832636 + RSINE1 SINE B4 3 165 0 5 801 429 158 0 0 chr12 28424894 28424976 -92832554 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 801 373 202 107 0 chr12 28424981 28425065 -92832465 + HAL1-3A_ME LINE L1 1967 2059 -799 5 801 281 325 54 44 chr12 28426284 28426487 -92831043 + L1MC1 LINE L1 6121 6325 -8 5 801 612 370 32 21 chr12 28427381 28427665 -92829865 - B4A SINE B4 0 292 6 5 801 309 216 25 63 chr12 28428239 28428318 -92829212 - B3 SINE B2 -4 212 137 5 801 418 254 23 11 chr12 28430397 28430509 -92827021 - B4 SINE B4 -107 117 3 5 801 350 299 123 0 chr12 28431115 28431269 -92826261 + MER5A DNA MER1_type 17 189 0 5 801 547 225 133 0 chr12 28432089 28432209 -92825321 + RSINE1 SINE B4 9 144 -21 5 801 36 23 0 0 chr12 28432233 28432276 -92825254 + AT_rich Low_complexity Low_complexity 1 43 0 5 801 703 43 34 17 chr12 28432376 28432493 -92825037 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 5 801 291 273 78 88 chr12 28432521 28432701 -92824829 - MLT2D LTR ERVL -41 518 376 5 801 21833 164 54 39 chr12 28433216 28437482 -92820048 + L1_Mus1 LINE L1 513 4733 -1150 5 801 180 0 0 0 chr12 28437482 28437502 -92820028 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 801 21833 122 42 14 chr12 28437502 28438549 -92818981 + L1_Mus1 LINE L1 4734 5912 -655 5 801 7245 107 14 2 chr12 28438546 28440232 -92817298 + L1_Mus3 LINE L1 4923 6636 -2 5 801 680 98 16 0 chr12 28440985 28441108 -92816422 + (TCTCTG)n Simple_repeat Simple_repeat 2 126 0 5 801 219 284 0 0 chr12 28441181 28441336 -92816194 + (TG)n Simple_repeat Simple_repeat 2 156 0 5 801 2892 137 11 11 chr12 28441390 28441847 -92815683 - Lx4A LINE L1 0 7058 6602 5 802 2059 161 125 91 chr12 28444011 28444442 -92813088 + RLTR41 LTR ERV1 1 446 0 5 802 494 309 66 13 chr12 28445283 28445434 -92812096 - RSINE1 SINE B4 -3 162 4 5 802 246 180 0 74 chr12 28446140 28446194 -92811336 - MT2B LTR ERVL 0 584 535 5 802 221 120 37 74 chr12 28446212 28446293 -92811237 + (TTATA)n Simple_repeat Simple_repeat 2 79 0 5 802 985 241 78 111 chr12 28446293 28446773 -92810757 - MT2B LTR ERVL -30 571 1 5 802 226 329 28 14 chr12 28447003 28447074 -92810456 + B4A SINE B4 217 288 -4 5 802 229 299 0 0 chr12 28447111 28447178 -92810352 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 802 1913 179 134 13 chr12 28447362 28447736 -92809794 - MTD LTR MaLR 0 419 1 6 802 537 76 0 0 chr12 28448011 28448090 -92809440 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 802 539 327 33 0 chr12 28448100 28448250 -92809280 - B3A SINE B2 -42 156 2 6 802 767 66 0 9 chr12 28448434 28448541 -92808989 + (GAAAA)n Simple_repeat Simple_repeat 3 108 0 6 802 286 164 27 14 chr12 28449178 28449252 -92808278 + CT-rich Low_complexity Low_complexity 1 75 0 6 802 1326 278 146 29 chr12 28450762 28450805 -92806725 - ORR1E-int LTR MaLR -259 1321 1273 6 802 423 0 0 0 chr12 28450805 28450852 -92806678 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 802 1326 302 179 55 chr12 28450852 28451677 -92805853 - ORR1E-int LTR MaLR -308 1272 1 6 802 862 259 122 45 chr12 28451735 28452030 -92805500 + ORR1D2 LTR MaLR 1 321 -49 6 802 602 331 106 51 chr12 28452030 28452425 -92805105 - MTD LTR MaLR 0 419 3 6 802 297 51 0 0 chr12 28452556 28452595 -92804935 + (T)n Simple_repeat Simple_repeat 1 39 0 6 802 432 0 0 0 chr12 28452670 28452718 -92804812 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 802 630 316 118 55 chr12 28453544 28453777 -92803753 + B4 SINE B4 3 261 -31 6 802 1189 232 84 84 chr12 28453777 28454134 -92803396 - ORR1E LTR MaLR -2 357 1 6 802 630 316 118 55 chr12 28454134 28454158 -92803372 + B4 SINE B4 262 279 -13 6 802 555 108 0 0 chr12 28454158 28454251 -92803279 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 802 630 316 118 55 chr12 28454251 28454263 -92803267 + B4 SINE B4 280 290 -2 6 802 24 32 0 0 chr12 28454550 28454581 -92802949 + AT_rich Low_complexity Low_complexity 1 31 0 6 802 267 345 128 8 chr12 28455238 28455495 -92802035 + L1M4b LINE L1 1465 1752 -5582 6 802 1347 253 45 19 chr12 28455740 28456099 -92801431 - ORR1D2 LTR MaLR -2 368 1 6 802 356 88 18 0 chr12 28456940 28456997 -92800533 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 802 1246 267 67 39 chr12 28457439 28457619 -92799911 + MTEa LTR MaLR 1 201 -178 6 802 2405 139 0 48 chr12 28457619 28458035 -92799495 - RMER10B LTR ERVL -1 397 2 6 802 1246 267 67 39 chr12 28458035 28458213 -92799317 + MTEa LTR MaLR 202 369 -10 6 802 3141 82 23 5 chr12 28458655 28459048 -92798482 + MTB LTR MaLR 1 400 0 6 802 354 45 0 0 chr12 28459944 28459988 -92797542 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 802 1826 176 35 31 chr12 28460127 28460574 -92796956 + RMER17C LTR ERVK 16 439 -519 6 802 22 35 0 0 chr12 28461619 28461648 -92795882 + AT_rich Low_complexity Low_complexity 1 29 0 6 802 31 0 0 0 chr12 28462005 28462036 -92795494 + AT_rich Low_complexity Low_complexity 1 31 0 6 802 895 277 9 14 chr12 28462279 28462495 -92795035 - B3 SINE B2 0 216 2 6 802 3669 18 13 0 chr12 28463554 28463945 -92793585 - MTA_Mm LTR MaLR 0 396 1 6 802 10209 20 1 0 chr12 28463945 28465042 -92792488 - MTA_Mm-int LTR MaLR 0 1098 1 6 802 3776 18 0 0 chr12 28465042 28465438 -92792092 - MTA_Mm LTR MaLR 0 396 1 6 802 643 258 6 13 chr12 28466323 28466519 -92791011 - Lx9 LINE L1 -456 7188 6850 6 802 279 0 0 0 chr12 28466663 28466694 -92790836 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 802 510 209 172 9 chr12 28467573 28467689 -92789841 + RSINE1 SINE B4 3 137 -28 6 802 5120 70 14 14 chr12 28468701 28469352 -92788178 - L1_Mus3 LINE L1 0 6638 5988 6 802 656 232 21 18 chr12 28470966 28471145 -92786385 - B3 SINE B2 -9 186 6 6 802 833 218 136 5 chr12 28471209 28471407 -92786123 + URR1A DNA MER1_type 1 224 -2 6 802 302 122 61 10 chr12 28473197 28473296 -92784234 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 6 802 2536 49 10 0 chr12 28475025 28475331 -92782199 - L1Md_F2 LINE L1 -1 6581 6273 6 802 1401 6 0 0 chr12 28475649 28475807 -92781723 + (TTC)n Simple_repeat Simple_repeat 2 159 0 6 802 1011 219 73 24 chr12 28475817 28476023 -92781507 - B3 SINE B2 0 216 1 6 802 197 132 0 26 chr12 28476074 28476113 -92781417 + T-rich Low_complexity Low_complexity 2 39 0 6 802 335 257 0 148 chr12 28476557 28476685 -92780845 - PB1D7 SINE Alu -8 112 4 6 802 387 106 0 0 chr12 28477187 28477253 -92780277 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 802 362 278 72 27 chr12 28477279 28477390 -92780140 + B1F SINE Alu 33 148 -1 6 802 4766 80 3 5 chr12 28479171 28479775 -92777755 - Lx LINE L1 -2 6652 6050 6 802 282 86 0 0 chr12 28479776 28479811 -92777719 + Lx LINE L1 5971 6005 -649 6 802 270 176 0 0 chr12 28480025 28480076 -92777454 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 802 324 0 0 0 chr12 28480077 28480113 -92777417 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 802 340 337 34 0 chr12 28481062 28481237 -92776293 + L1M4 LINE L1 4528 4708 -1438 6 802 1215 287 112 12 chr12 28482487 28482971 -92774559 + RMER5 LTR ERV1 3 534 0 6 802 1035 202 285 37 chr12 28483489 28483552 -92773978 - ORR1D1 LTR MaLR -2 372 310 6 802 207 0 0 0 chr12 28483552 28483575 -92773955 + (TTTAA)n Simple_repeat Simple_repeat 4 26 0 6 802 1035 202 285 37 chr12 28483575 28483809 -92773721 - ORR1D1 LTR MaLR -65 309 1 6 802 2094 179 88 30 chr12 28483904 28484302 -92773228 + MTC LTR MaLR 1 421 0 6 802 916 294 62 7 chr12 28484955 28485260 -92772270 + Lx9 LINE L1 5653 5974 -1670 6 802 1065 72 0 14 chr12 28485264 28485405 -92772125 + B1_Mus2 SINE Alu 9 147 0 6 802 290 67 0 96 chr12 28485406 28485489 -92772041 + A-rich Low_complexity Low_complexity 3 77 0 6 802 538 299 37 37 chr12 28485662 28485853 -92771677 - RMER30 DNA MER1_type -7 195 5 6 802 786 118 0 0 chr12 28486517 28486669 -92770861 + (TC)n Simple_repeat Simple_repeat 1 152 0 6 802 1421 223 125 35 chr12 28486789 28487084 -92770446 + MTD LTR MaLR 1 295 -124 6 802 3667 80 25 8 chr12 28487084 28487563 -92769967 + L1_Mus2 LINE L1 6079 6565 -1 6 802 1421 223 125 35 chr12 28487563 28487603 -92769927 + MTD LTR MaLR 296 357 -62 6 802 3115 53 42 10 chr12 28487603 28487987 -92769543 + MTA_Mm LTR MaLR 1 396 0 6 802 1421 223 125 35 chr12 28487987 28488027 -92769503 + MTD LTR MaLR 358 410 -9 6 802 580 303 58 31 chr12 28488400 28488625 -92768905 - RMER15 LTR ERVL -59 516 286 6 802 1316 227 92 15 chr12 28488840 28489229 -92768301 - MTD LTR MaLR 0 419 1 6 802 1223 68 0 0 chr12 28490590 28490736 -92766794 - B1_Mm SINE Alu -1 146 1 6 802 205 156 76 30 chr12 28490787 28490853 -92766677 + T-rich Low_complexity Low_complexity 6 74 0 6 802 283 132 185 62 chr12 28490972 28491053 -92766477 + PB1D9 SINE Alu 26 116 -4 6 802 1693 230 29 44 chr12 28491659 28492068 -92765462 - MTD LTR MaLR -12 407 5 6 802 417 248 71 13 chr12 28492080 28492235 -92765295 - MTD-int LTR MaLR -2 1256 1093 6 802 468 121 0 0 chr12 28492574 28492665 -92764865 + (TC)n Simple_repeat Simple_repeat 1 91 0 6 802 258 32 0 0 chr12 28492665 28492696 -92764834 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 802 314 225 69 43 chr12 28492750 28492866 -92764664 - MER57F LTR ERV1 -184 252 134 6 802 8979 127 6 2 chr12 28492866 28495021 -92762509 - L1_Mus3 LINE L1 -23 6615 4452 6 802 9246 142 10 7 chr12 28495012 28496520 -92761010 + L1_Mus3 LINE L1 2932 4444 -1439 6 802 11697 161 48 25 chr12 28496527 28498802 -92758728 - Lx4B LINE L1 -4 6996 4662 6 802 292 0 70 0 chr12 28498802 28498845 -92758685 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 6 802 11697 144 53 22 chr12 28498845 28499751 -92757779 - Lx4B LINE L1 -1216 4661 3696 6 802 1944 56 4 12 chr12 28499745 28499998 -92757532 - L1_Mus1 LINE L1 0 6567 6317 6 802 4609 167 60 26 chr12 28500010 28501006 -92756524 - L1_Mur1 LINE L1 -2166 3711 2682 1 802 4088 189 13 5 chr12 28500982 28502116 -92755414 - L1_Mur1 LINE L1 -1877 2037 891 1 802 269 270 206 0 chr12 28502390 28502516 -92755014 - MER57F LTR ERV1 -271 165 14 2 802 25 51 0 0 chr12 28503627 28503666 -92753864 + AT_rich Low_complexity Low_complexity 1 39 0 3 802 459 0 0 0 chr12 28503880 28503931 -92753599 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 802 633 27 0 0 chr12 28503931 28504005 -92753525 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 802 556 291 40 0 chr12 28504006 28504157 -92753373 - B3A SINE B2 -41 157 1 6 802 602 309 147 45 chr12 28506341 28506920 -92750610 - L1MD1 LINE L1 -1 6241 5604 7 802 1504 237 35 12 chr12 28508700 28509046 -92748484 - MTD LTR MaLR -48 371 18 8 802 750 241 153 67 chr12 28509105 28509440 -92748090 + MTD LTR MaLR 19 386 -33 9 802 244 188 148 12 chr12 28509693 28509774 -92747756 - MER34A1 LTR ERV1 -72 515 424 1 802 402 211 0 0 chr12 28510190 28510299 -92747231 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 802 213 39 0 0 chr12 28512616 28512642 -92744888 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1 802 608 314 145 30 chr12 28513961 28514230 -92743300 - MTEa LTR MaLR -79 300 1 1 802 679 296 113 51 chr12 28515777 28516229 -92741301 + RMER5 LTR ERV1 48 527 -7 1 802 501 47 0 0 chr12 28516351 28516415 -92741115 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 802 297 0 0 0 chr12 28519589 28519622 -92737908 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 1 802 8046 18 3 0 chr12 28520021 28520934 -92736596 - L1Md_A LINE L1 -276 5607 4692 1 802 8432 32 1 0 chr12 28520934 28521909 -92735621 + L1Md_A LINE L1 5606 6581 -1 1 802 452 265 181 6 chr12 28525633 28525815 -92731715 - B3 SINE B2 0 216 3 1 802 182 242 31 46 chr12 28526697 28526762 -92730768 + L2 LINE L2 295 358 -3061 1 802 7325 137 11 3 chr12 28526836 28528000 -92729530 + L1_Mm LINE L1 3902 5075 -808 2 802 252 86 0 0 chr12 28528201 28528236 -92729294 + (A)n Simple_repeat Simple_repeat 1 35 0 2 802 828 75 45 34 chr12 28528366 28528544 -92728986 + GA-rich Low_complexity Low_complexity 1 180 0 2 802 442 186 0 110 chr12 28529092 28529201 -92728329 + RSINE1 SINE B4 45 141 -24 2 802 564 42 0 0 chr12 28529576 28529647 -92727883 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 802 281 214 120 33 chr12 28530934 28531026 -92726504 + PB1D9 SINE Alu 15 114 -6 2 802 360 94 0 0 chr12 28531496 28531549 -92725981 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 802 388 264 0 91 chr12 28531970 28532091 -92725439 + PB1D10 SINE Alu 7 116 -1 2 802 1242 147 42 147 chr12 28532115 28532475 -92725055 - RLTRETN_Mm LTR ERVK 0 322 1 2 802 521 256 158 0 chr12 28532725 28532889 -92724641 - B3A SINE B2 -8 190 1 2 802 239 0 0 31 chr12 28536584 28536616 -92720914 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 3 802 373 336 30 0 chr12 28537503 28537637 -92719893 + ID_B1 SINE B4 78 215 -9 3 802 585 0 0 0 chr12 28537648 28537713 -92719817 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 802 2287 161 35 0 chr12 28537985 28538382 -92719148 + MTC LTR MaLR 11 421 0 3 802 339 364 70 18 chr12 28539091 28539376 -92718154 + RMER5 LTR ERV1 46 345 -189 3 802 341 264 30 46 chr12 28539398 28539529 -92718001 + RMER5 LTR ERV1 388 516 -18 3 802 1482 157 0 4 chr12 28540348 28540597 -92716933 - MTC LTR MaLR 0 421 174 3 802 21580 149 64 15 chr12 28540937 28546784 -92710746 + Lx2B LINE L1 837 7000 0 3 802 469 206 75 0 chr12 28546799 28546906 -92710624 - MTC LTR MaLR -301 120 6 3 802 233 204 211 21 chr12 28550195 28550290 -92707240 + RMER15 LTR ERVL 18 130 -445 3 802 348 287 108 18 chr12 28550790 28550957 -92706573 + L1M2 LINE L1 3478 3659 -2484 3 802 642 309 88 29 chr12 28552406 28552614 -92704916 - L1MC3 LINE L1 0 7785 7562 3 802 186 43 0 0 chr12 28552614 28552637 -92704893 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 802 362 114 14 0 chr12 28552637 28552706 -92704824 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 802 642 309 88 29 chr12 28552706 28552983 -92704547 - L1MC3 LINE L1 -224 7561 7271 3 802 1105 264 83 14 chr12 28553116 28553465 -92704065 + MTE2b LTR MaLR 1 373 -6 4 802 268 344 70 16 chr12 28553633 28553819 -92703711 - MLT1A1 LTR MaLR 0 408 213 4 802 929 67 1 0 chr12 28553958 28554088 -92703442 + B1_Mus1 SINE Alu 4 136 -13 4 802 216 0 0 0 chr12 28554088 28554112 -92703418 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 802 875 126 21 0 chr12 28554112 28554124 -92703406 + B1_Mur3 SINE Alu 137 148 -1 4 802 248 341 69 22 chr12 28554149 28554380 -92703150 - L1MC3 LINE L1 -522 5822 5581 3 802 312 306 85 17 chr12 28554593 28554769 -92702761 - L1MC3 LINE L1 -1828 4318 4131 3 802 22 0 0 0 chr12 28554819 28554841 -92702689 + AT_rich Low_complexity Low_complexity 1 22 0 4 802 684 0 0 0 chr12 28554864 28554940 -92702590 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 802 791 267 0 0 chr12 28554944 28555124 -92702406 - B3A SINE B2 -16 182 3 4 802 33 56 0 0 chr12 28555265 28555319 -92702211 + AT_rich Low_complexity Low_complexity 1 54 0 4 802 359 320 116 45 chr12 28555559 28556165 -92701365 - L1MC LINE L1 -1310 4836 4188 5 802 835 233 14 45 chr12 28556630 28556850 -92700680 - MTEa LTR MaLR -166 213 1 5 802 494 332 48 45 chr12 28556862 28557174 -92700356 + Tigger2b DNA MER2_type 155 467 -259 5 802 333 0 0 0 chr12 28558469 28558506 -92699024 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 802 574 324 44 59 chr12 28558570 28558842 -92698688 - Lx8 LINE L1 -384 7089 6822 5 802 290 256 26 0 chr12 28558940 28559018 -92698512 - MER20 DNA MER1_type -85 134 55 5 802 417 226 0 0 chr12 28559595 28559772 -92697758 + (TA)n Simple_repeat Simple_repeat 1 177 0 5 802 4817 272 35 21 chr12 28559796 28560621 -92696909 + Lx7 LINE L1 6001 6824 -872 5 802 2824 79 45 3 chr12 28560621 28561001 -92696529 - MTA_Mm LTR MaLR 0 396 1 5 802 4817 272 35 21 chr12 28561001 28561538 -92695992 + Lx7 LINE L1 6825 7382 -314 5 802 216 0 0 0 chr12 28561550 28561574 -92695956 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 802 255 224 53 0 chr12 28561644 28561720 -92695810 + Lx7 LINE L1 7612 7691 -5 5 802 2632 194 26 19 chr12 28562912 28563449 -92694081 + RLTR20A LTR ERVK 1 541 0 6 802 4832 189 27 35 chr12 28563841 28565146 -92692384 + L1_Mur3 LINE L1 895 2190 -3687 6 802 189 0 0 0 chr12 28565278 28565299 -92692231 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 802 468 0 0 0 chr12 28565299 28565350 -92692180 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 802 229 252 31 49 chr12 28565569 28565732 -92691798 + (CACAT)n Simple_repeat Simple_repeat 1 160 0 6 802 259 109 73 0 chr12 28565758 28565813 -92691717 + (CATAT)n Simple_repeat Simple_repeat 1 59 0 6 802 261 0 0 0 chr12 28565882 28565911 -92691619 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 802 198 0 0 0 chr12 28565911 28565932 -92691598 + (TA)n Simple_repeat Simple_repeat 1 22 0 6 802 381 277 35 21 chr12 28566346 28566490 -92691040 + Charlie22a DNA MER1_type 127 272 -219 6 802 416 259 23 40 chr12 28567042 28567219 -92690311 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 6 802 540 0 0 0 chr12 28568222 28568282 -92689248 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 802 447 360 26 29 chr12 28569647 28570093 -92687437 + RLTR4_MM-int LTR ERV1 1160 1851 -5927 7 802 1671 334 88 60 chr12 28570311 28573367 -92684163 + RLTR4_MM-int LTR ERV1 2075 5178 -2378 7 802 291 328 37 15 chr12 28573379 28573515 -92684015 + RLTR14-int LTR ERV1 3728 3866 -1451 7 802 516 333 33 0 chr12 28573415 28573565 -92683965 + RLTR19-int LTR ERVK 4363 4517 -1620 7 803 285 329 46 58 chr12 28574718 28574948 -92682582 + RLTR14-int LTR ERV1 4832 5061 -256 7 803 1180 49 0 7 chr12 28574948 28575092 -92682438 + B1_Mm SINE Alu 5 147 0 7 803 285 329 46 58 chr12 28575092 28575122 -92682408 + RLTR14-int LTR ERV1 5062 5089 -228 7 803 448 196 95 51 chr12 28575505 28575717 -92681813 + RLTR19 LTR ERVK 19 345 -154 7 803 685 266 30 54 chr12 28575727 28575930 -92681600 + RLTR19 LTR ERVK 302 499 0 7 803 312 0 0 0 chr12 28576436 28576474 -92681056 - tRNA-Ile-ATA tRNA tRNA -39 38 1 7 803 3231 45 2 5 chr12 28576479 28576878 -92680652 + L1Md_F2 LINE L1 6184 6581 -1 7 803 781 275 5 20 chr12 28577394 28577591 -92679939 - B3A SINE B2 -4 194 1 7 803 25 75 0 0 chr12 28577658 28577711 -92679819 + AT_rich Low_complexity Low_complexity 1 53 0 7 803 1110 181 362 26 chr12 28578428 28578740 -92678790 + MTC LTR MaLR 5 421 0 8 803 297 0 0 0 chr12 28580649 28580682 -92676848 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 8 803 1714 168 28 19 chr12 28580682 28581004 -92676526 - Lx4A LINE L1 -11 7047 6723 8 803 303 191 0 0 chr12 28581581 28581644 -92675886 + CT-rich Low_complexity Low_complexity 1 63 0 8 803 23 0 0 0 chr12 28581949 28581972 -92675558 + AT_rich Low_complexity Low_complexity 1 23 0 8 803 39872 55 1 23 chr12 28581977 28588650 -92668880 - L1Md_T LINE L1 0 6582 104 8 803 3777 122 5 9 chr12 28588650 28589215 -92668315 - Lx4A LINE L1 -321 6737 6175 8 803 1834 135 39 7 chr12 28589548 28589853 -92667677 - Lx4A LINE L1 -879 6179 5865 8 803 677 180 42 0 chr12 28590433 28590722 -92666808 + GA-rich Low_complexity Low_complexity 1 300 0 8 803 3550 29 35 5 chr12 28591406 28591829 -92665701 - RLTR10C LTR ERVK 0 436 1 8 803 516 16 0 0 chr12 28592115 28592176 -92665354 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 803 416 309 65 8 chr12 28592179 28592303 -92665227 - RSINE1 SINE B4 -33 132 2 8 803 947 246 54 68 chr12 28592378 28592674 -92664856 + B4 SINE B4 1 292 0 9 803 1803 204 42 49 chr12 28592762 28593170 -92664360 - MTD LTR MaLR -5 414 10 9 803 279 0 0 0 chr12 28594959 28594990 -92662540 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 803 526 310 35 0 chr12 28594995 28595137 -92662393 - RSINE1 SINE B4 -18 147 1 9 803 483 278 44 58 chr12 28595158 28595364 -92662166 + MTD LTR MaLR 1 203 -216 9 803 1835 182 92 3 chr12 28595371 28595752 -92661778 - MTC LTR MaLR 0 421 7 9 803 504 204 239 13 chr12 28595758 28595917 -92661613 + MTD LTR MaLR 225 419 0 9 803 204 184 0 0 chr12 28596290 28596339 -92661191 + T-rich Low_complexity Low_complexity 1 49 0 9 803 3586 72 2 0 chr12 28596342 28596801 -92660729 - L1_Mus1 LINE L1 0 6567 6108 9 803 6797 132 21 7 chr12 28596866 28597929 -92659601 - Lx4A LINE L1 0 7058 5981 9 803 393 265 20 0 chr12 28597956 28598054 -92659476 - MTE2b LTR MaLR -278 101 2 9 803 283 286 14 0 chr12 28598666 28598736 -92658794 - ID4_ SINE ID -11 72 2 1 803 3387 89 21 8 chr12 28599269 28599743 -92657787 + L1_Mus3 LINE L1 6158 6637 -1 1 803 325 291 14 69 chr12 28599825 28599969 -92657561 - RMER30 DNA MER1_type -51 151 16 1 803 364 286 133 0 chr12 28600610 28600715 -92656815 + RSINE1 SINE B4 23 141 -24 1 803 495 0 0 0 chr12 28600725 28600780 -92656750 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 803 840 169 12 30 chr12 28602454 28602619 -92654911 + B2_Mm2 SINE B2 4 165 -30 1 803 662 302 75 92 chr12 28602668 28602963 -92654567 + B4A SINE B4 1 290 -2 1 803 718 220 77 39 chr12 28604780 28604988 -92652542 - B3 SINE B2 0 216 1 1 803 440 310 47 43 chr12 28605344 28605600 -92651930 + MLT1A LTR MaLR 107 363 -11 1 803 2186 189 20 18 chr12 28606437 28606835 -92650695 + MERVL_2A-int LTR ERVL 4582 4980 -781 1 803 1572 140 4 0 chr12 28606823 28607059 -92650471 + MERVL_2A-int LTR ERVL 5168 5404 -357 1 803 326 107 0 35 chr12 28607060 28607118 -92650412 - ORR1A4 LTR MaLR -273 56 1 1 803 1631 142 91 16 chr12 28607152 28607461 -92650069 + ORR1B2 LTR MaLR 1 332 -35 1 803 21 57 0 0 chr12 28609122 28609157 -92648373 + AT_rich Low_complexity Low_complexity 1 35 0 1 803 1707 169 146 9 chr12 28610238 28610404 -92647126 + ORR1D1 LTR MaLR 1 203 -171 1 803 774 22 0 0 chr12 28610404 28610496 -92647034 + (TC)n Simple_repeat Simple_repeat 2 93 0 1 803 228 67 0 0 chr12 28610496 28610525 -92647005 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 803 1707 169 146 9 chr12 28610525 28610686 -92646844 + ORR1D1 LTR MaLR 204 373 -1 1 803 447 311 24 18 chr12 28610972 28611139 -92646391 - RMER15-int LTR ERVL -3393 1606 1439 1 803 1815 172 119 0 chr12 28611199 28611570 -92645960 + MTC LTR MaLR 7 421 0 1 803 446 274 94 34 chr12 28611570 28611804 -92645726 - RMER15-int LTR ERVL -4273 726 479 1 803 257 261 143 43 chr12 28611940 28612080 -92645450 - RMER15 LTR ERVL 0 575 422 1 803 599 280 89 42 chr12 28614203 28614393 -92643137 - B3A SINE B2 -8 208 10 1 803 252 0 0 0 chr12 28614413 28614441 -92643089 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1 803 378 260 0 46 chr12 28614958 28615067 -92642463 + B4A SINE B4 3 106 -186 1 803 2143 126 9 3 chr12 28615447 28615774 -92641756 - ORR1A4 LTR MaLR 0 329 1 1 803 21 0 0 0 chr12 28616137 28616158 -92641372 + AT_rich Low_complexity Low_complexity 1 21 0 1 803 198 0 0 0 chr12 28616164 28616186 -92641344 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 803 441 0 0 0 chr12 28617073 28617122 -92640408 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 803 207 0 0 0 chr12 28617155 28617178 -92640352 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 803 361 295 13 26 chr12 28618954 28619107 -92638423 + GA-rich Low_complexity Low_complexity 3 153 0 1 803 220 312 26 60 chr12 28619267 28619383 -92638147 + MIRb SINE MIR 84 195 -73 1 803 480 308 139 27 chr12 28620221 28620661 -92636869 - MER45B DNA Tip100 -58 982 494 1 803 2167 112 9 61 chr12 28620823 28621167 -92636363 + ORR1A3 LTR MaLR 1 326 0 1 803 180 158 0 0 chr12 28621539 28621577 -92635953 + T-rich Low_complexity Low_complexity 1 38 0 1 803 747 254 72 29 chr12 28621805 28621858 -92635672 - ID_B1 SINE B4 0 224 177 1 803 1753 199 98 15 chr12 28621858 28622247 -92635283 + MTC LTR MaLR 1 421 0 1 803 747 254 72 29 chr12 28622247 28622400 -92635130 - ID_B1 SINE B4 -48 176 9 1 803 486 0 0 0 chr12 28622716 28622770 -92634760 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 803 423 0 0 0 chr12 28623519 28623566 -92633964 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 803 445 331 7 0 chr12 28623571 28623725 -92633805 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 803 304 266 18 18 chr12 28625246 28625357 -92632173 + MLT1A0 LTR MaLR 255 365 0 1 803 3342 44 177 2 chr12 28626256 28626692 -92630838 + RLTR1B LTR ERV1 1 512 0 1 803 24 0 0 0 chr12 28627224 28627248 -92630282 + AT_rich Low_complexity Low_complexity 1 24 0 1 803 250 365 20 40 chr12 28627248 28627348 -92630182 - RSINE1 SINE B4 -11 154 57 1 803 1714 212 90 16 chr12 28627904 28628292 -92629238 + MTC LTR MaLR 1 417 -4 1 803 383 256 12 0 chr12 28628878 28628960 -92628570 + ID4_ SINE ID 1 83 0 1 803 4524 146 12 15 chr12 28629012 28629764 -92627766 - Lx4A LINE L1 -10 7048 6299 1 803 1372 143 8 48 chr12 28630023 28630273 -92627257 - MTC LTR MaLR -1 420 181 1 803 218 179 0 0 chr12 28630928 28630967 -92626563 - B2_Mm1t SINE B2 -154 39 1 1 803 427 316 33 22 chr12 28633244 28633425 -92624105 + RMER15-int LTR ERVL 490 672 -4327 1 803 315 0 0 0 chr12 28634471 28634506 -92623024 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 803 522 0 0 0 chr12 28634506 28634563 -92622967 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 803 807 350 45 31 chr12 28634563 28634988 -92622542 + RMER15-int LTR ERVL 4176 4606 -393 1 803 693 287 41 5 chr12 28635131 28635327 -92622203 - ID_B1 SINE B4 -21 203 1 1 803 24 32 0 0 chr12 28635732 28635763 -92621767 + AT_rich Low_complexity Low_complexity 1 31 0 1 803 914 213 0 48 chr12 28635918 28636125 -92621405 + ORR1E LTR MaLR 1 197 -162 1 803 678 82 0 0 chr12 28637922 28638020 -92619510 + (TC)n Simple_repeat Simple_repeat 1 98 0 1 803 345 47 0 0 chr12 28638711 28638754 -92618776 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 803 207 0 0 0 chr12 28638754 28638776 -92618754 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 803 974 33 8 0 chr12 28639385 28639507 -92618023 + (TC)n Simple_repeat Simple_repeat 1 123 0 1 803 2672 149 147 12 chr12 28640184 28640681 -92616849 - RLTR12A LTR ERVK -4 564 1 1 803 21 0 0 0 chr12 28641469 28641490 -92616040 + AT_rich Low_complexity Low_complexity 1 21 0 1 803 272 27 27 0 chr12 28641850 28641887 -92615643 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 803 336 322 17 116 chr12 28642398 28642570 -92614960 + RSINE1 SINE B4 5 159 -6 1 803 204 233 40 14 chr12 28642570 28642638 -92614892 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 803 219 161 76 0 chr12 28642657 28642775 -92614755 + (CA)n Simple_repeat Simple_repeat 1 127 0 1 803 236 243 56 9 chr12 28642788 28642896 -92614634 + (CA)n Simple_repeat Simple_repeat 1 113 0 1 803 186 175 51 26 chr12 28642925 28643042 -92614488 + (CA)n Simple_repeat Simple_repeat 1 120 0 1 803 356 38 19 19 chr12 28643043 28643096 -92614434 + HAL1-3A_ME LINE L1 1977 2029 -829 1 803 228 200 0 107 chr12 28643972 28644028 -92613502 - B3 SINE B2 -166 50 1 1 803 21 36 0 0 chr12 28644203 28644231 -92613299 + AT_rich Low_complexity Low_complexity 1 28 0 1 803 381 342 158 8 chr12 28644346 28644611 -92612919 - Lx8 LINE L1 -143 7330 7026 1 803 1579 138 15 4 chr12 28645590 28645859 -92611671 - Lx LINE L1 0 6654 6383 1 803 4231 135 6 2 chr12 28645870 28646515 -92611015 + Lx2 LINE L1 6084 6731 -266 1 803 211 271 0 0 chr12 28647142 28647190 -92610340 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 803 486 0 0 0 chr12 28647356 28647410 -92610120 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 803 396 40 0 0 chr12 28647777 28647827 -92609703 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 803 9120 152 57 18 chr12 28648344 28651101 -92606429 - Lx2B LINE L1 -6 6994 4121 1 803 5201 175 36 35 chr12 28651099 28652830 -92604700 - L1VL4 LINE L1 -1780 1835 67 1 803 342 0 0 0 chr12 28653341 28653379 -92604151 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 803 738 258 18 37 chr12 28654772 28654989 -92602541 + B3 SINE B2 4 216 0 1 803 549 30 0 0 chr12 28655650 28655717 -92601813 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 803 257 336 108 39 chr12 28655718 28655848 -92601682 - RSINE1 SINE B4 -24 141 3 1 803 238 196 0 0 chr12 28656859 28656910 -92600620 + (CTATT)n Simple_repeat Simple_repeat 2 52 0 1 803 315 0 0 0 chr12 28657267 28657302 -92600228 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 803 191 271 0 147 chr12 28658390 28658533 -92598997 + L2 LINE L2 1961 2082 -1337 1 803 241 230 95 0 chr12 28658808 28658882 -92598648 - ID4_ SINE ID 0 83 3 1 803 712 274 122 17 chr12 28659209 28659439 -92598091 + Lx5 LINE L1 6507 6760 -290 1 803 976 207 0 152 chr12 28659443 28659779 -92597751 + RLTR11B LTR ERVK 1 285 -168 1 803 1077 268 14 30 chr12 28660030 28660119 -92597411 + Lx6 LINE L1 7144 7230 -230 1 803 6425 51 25 9 chr12 28660119 28660914 -92596616 + RLTR13C2 LTR ERVK 1 808 0 1 803 1077 268 14 30 chr12 28660914 28661120 -92596410 + Lx6 LINE L1 7231 7434 -26 1 803 672 294 29 78 chr12 28661463 28661744 -92595786 + B4A SINE B4 16 282 -10 1 803 243 61 0 0 chr12 28661795 28661828 -92595702 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 803 539 282 64 75 chr12 28664282 28664663 -92592867 + RLTR26 LTR ERVK 22 430 -212 1 803 397 318 192 38 chr12 28664939 28665282 -92592248 - Lx8 LINE L1 -277 7196 6801 1 803 1475 190 81 14 chr12 28666031 28666378 -92591152 - ORR1D1 LTR MaLR 0 374 5 1 803 801 286 9 28 chr12 28667398 28667610 -92589920 + B3 SINE B2 3 210 -6 1 803 21 36 0 0 chr12 28667645 28667673 -92589857 + AT_rich Low_complexity Low_complexity 1 28 0 1 803 237 271 69 50 chr12 28667972 28668073 -92589457 - L2a LINE L2 -267 3159 3057 1 803 949 290 27 41 chr12 28668490 28668785 -92588745 + B4 SINE B4 2 292 0 1 803 368 227 225 8 chr12 28670118 28670238 -92587292 + B1F SINE Alu 3 148 -1 1 803 2016 62 4 4 chr12 28670261 28670504 -92587026 + L1_Mus1 LINE L1 6324 6566 -1 1 803 384 239 37 0 chr12 28670664 28670798 -92586732 + (TA)n Simple_repeat Simple_repeat 2 140 0 1 803 924 270 55 118 chr12 28671395 28671794 -92585736 - MTE2a LTR MaLR 0 379 6 1 803 1050 69 0 0 chr12 28672449 28672593 -92584937 + (CTA)n Simple_repeat Simple_repeat 2 145 0 1 803 333 285 55 105 chr12 28672744 28672876 -92584654 + MT2A LTR ERVL 344 467 -66 1 803 677 227 150 6 chr12 28672876 28673049 -92584481 - B3A SINE B2 0 198 1 1 803 333 285 55 105 chr12 28673049 28673116 -92584414 + MT2A LTR ERVL 468 533 0 1 803 918 52 0 0 chr12 28673432 28673548 -92583982 + (GA)n Simple_repeat Simple_repeat 2 117 0 1 803 1556 195 60 11 chr12 28673929 28674282 -92583248 - Lx3C LINE L1 -2 6974 6605 1 803 6945 73 4 3 chr12 28674274 28675291 -92582239 - L1_Mus3 LINE L1 -174 6464 5448 2 803 743 251 75 20 chr12 28675322 28675574 -92581956 - Lx8 LINE L1 -10 7463 7198 2 803 801 314 111 25 chr12 28675570 28676142 -92581388 + L1_Mur3 LINE L1 4940 5607 -693 2 803 189 0 0 0 chr12 28676144 28676165 -92581365 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2 803 183 100 0 0 chr12 28676192 28676222 -92581308 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2 803 254 233 0 16 chr12 28676231 28676292 -92581238 - Lx8 LINE L1 -9 7464 7405 2 803 372 43 0 0 chr12 28677580 28677626 -92579904 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 803 678 282 78 31 chr12 28677634 28677890 -92579640 - B4A SINE B4 -23 269 2 2 803 483 48 0 0 chr12 28679500 28679562 -92577968 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 803 315 311 24 24 chr12 28679562 28679687 -92577843 - B3A SINE B2 -50 148 24 2 803 264 122 0 0 chr12 28680881 28680922 -92576608 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 803 713 279 18 12 chr12 28681734 28681901 -92575629 + B4A SINE B4 125 292 0 2 803 280 369 103 25 chr12 28682143 28682346 -92575184 - MLT1A0 LTR MaLR -83 282 64 2 803 216 310 0 0 chr12 28684445 28684503 -92573027 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 803 979 162 173 0 chr12 28684554 28684745 -92572785 - URR1B DNA MER1_type -1 224 1 2 803 267 293 13 0 chr12 28685293 28685368 -92572162 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 803 676 243 41 20 chr12 28686075 28686222 -92571308 + RSINE1 SINE B4 5 154 -11 2 803 228 288 106 80 chr12 28687087 28687238 -92570292 + MER68 LTR ERVL 50 204 -359 2 803 1035 190 24 14 chr12 28687388 28687596 -92569934 - URR1B DNA MER1_type -3 222 13 2 803 2245 159 65 5 chr12 28687610 28687982 -92569548 + ORR1B1 LTR MaLR 1 394 0 2 803 346 138 17 0 chr12 28688193 28688251 -92569279 - B3 SINE B2 -6 210 152 2 803 417 294 7 0 chr12 28688423 28688566 -92568964 - L1MA10 LINE L1 0 6334 6191 2 803 227 290 31 25 chr12 28689040 28689179 -92568351 - L1MA10 LINE L1 -731 5431 5291 2 803 240 329 12 96 chr12 28689359 28689608 -92567922 - L1MA10 LINE L1 -4680 1562 1335 2 803 1036 212 0 0 chr12 28689981 28690179 -92567351 - L1_Mur3 LINE L1 -3159 2721 2524 2 803 266 180 16 0 chr12 28690179 28690240 -92567290 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 803 510 283 56 101 chr12 28690283 28690570 -92566960 - B4A SINE B4 -18 274 1 2 803 21 0 0 0 chr12 28690827 28690848 -92566682 + AT_rich Low_complexity Low_complexity 1 21 0 2 803 1419 245 78 9 chr12 28691349 28691695 -92565835 - ORR1D2 LTR MaLR 0 370 1 2 803 414 0 0 0 chr12 28691729 28691775 -92565755 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 803 867 232 34 15 chr12 28693313 28693519 -92564011 + B3 SINE B2 1 210 -6 2 803 35 24 0 0 chr12 28693762 28693804 -92563726 + AT_rich Low_complexity Low_complexity 1 42 0 2 803 311 136 0 17 chr12 28694466 28694526 -92563004 + (TGG)n Simple_repeat Simple_repeat 1 59 0 2 803 1257 268 133 10 chr12 28694594 28694978 -92562552 - Lx8 LINE L1 -191 7282 6852 2 803 1106 321 71 36 chr12 28695056 28695608 -92561922 - MTE-int LTR MaLR -1009 571 1 2 803 216 67 0 0 chr12 28696462 28696492 -92561038 + (TTA)n Simple_repeat Simple_repeat 3 32 0 2 803 1872 207 35 19 chr12 28697594 28697964 -92559566 + ORR1C1 LTR MaLR 3 378 0 2 803 354 309 378 7 chr12 28698487 28698771 -92558759 + MLT1A1 LTR MaLR 21 408 0 2 803 878 294 64 22 chr12 28698840 28699198 -92558332 + Lx8 LINE L1 6725 7097 -376 2 803 339 25 0 0 chr12 28699364 28699404 -92558126 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 803 522 0 0 0 chr12 28699404 28699461 -92558069 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 803 1175 261 88 50 chr12 28699487 28699830 -92557700 + MTD LTR MaLR 64 419 0 2 803 44 94 0 0 chr12 28699907 28700035 -92557495 + AT_rich Low_complexity Low_complexity 1 128 0 2 803 364 266 191 53 chr12 28700550 28700681 -92556849 - B1F SINE Alu 0 149 1 2 803 210 259 167 36 chr12 28701501 28701585 -92555945 - PB1D10 SINE Alu 0 117 23 2 803 1324 260 45 9 chr12 28702196 28702530 -92555000 - ORR1D2 LTR MaLR 0 370 25 2 803 666 312 76 7 chr12 28703924 28704214 -92553316 + Lx8 LINE L1 7104 7413 -60 2 803 477 0 0 0 chr12 28704216 28704269 -92553261 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 804 285 29 0 0 chr12 28705170 28705204 -92552326 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 2 804 318 88 14 29 chr12 28705210 28705280 -92552250 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 804 1123 147 28 0 chr12 28706168 28706345 -92551185 - B2_Mm2 SINE B2 -12 183 2 2 804 2772 243 84 22 chr12 28706390 28707198 -92550332 + Lx9 LINE L1 6659 7516 -128 2 804 888 136 11 22 chr12 28707221 28707402 -92550128 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2 804 31 0 0 0 chr12 28707500 28707531 -92549999 + AT_rich Low_complexity Low_complexity 1 31 0 2 804 529 259 295 0 chr12 28707576 28707742 -92549788 - B3 SINE B2 -1 215 1 2 804 1292 209 103 16 chr12 28708230 28708550 -92548980 + ORR1D1 LTR MaLR 27 374 0 2 804 324 332 79 31 chr12 28708657 28708884 -92548646 + L1MEb LINE L1 659 896 -5174 2 804 21 0 0 0 chr12 28708956 28708977 -92548553 + AT_rich Low_complexity Low_complexity 1 21 0 2 804 365 303 45 62 chr12 28709022 28709198 -92548332 + Lx9 LINE L1 7021 7193 -451 2 804 307 211 11 11 chr12 28709200 28709291 -92548239 + (ATG)n Simple_repeat Simple_repeat 1 91 0 2 804 22 56 0 0 chr12 28710086 28710122 -92547408 + AT_rich Low_complexity Low_complexity 1 36 0 2 804 1282 161 18 0 chr12 28710279 28710503 -92547027 - Lx2 LINE L1 0 6997 6770 2 804 8340 145 31 7 chr12 28710498 28712720 -92544810 - Lx2 LINE L1 -352 6645 4375 2 804 4395 155 120 62 chr12 28712712 28713704 -92543826 + Lx2 LINE L1 3366 4415 -1462 2 804 1173 332 52 16 chr12 28713767 28714206 -92543324 + Lx8 LINE L1 6896 7332 -141 2 804 2577 144 19 19 chr12 28714206 28714624 -92542906 + Lx3C LINE L1 6559 6976 0 2 804 1173 332 52 16 chr12 28714624 28714741 -92542789 + Lx8 LINE L1 7333 7472 -1 2 804 3454 204 14 31 chr12 28714923 28715658 -92541872 + Lx4B LINE L1 6301 7022 -36 2 804 348 136 0 42 chr12 28715671 28715752 -92541778 + L1_Mur2 LINE L1 1628 1705 -4175 2 804 1552 317 68 23 chr12 28715896 28716648 -92540882 + Lx8 LINE L1 6667 7452 -21 2 804 21 57 0 0 chr12 28716653 28716688 -92540842 + AT_rich Low_complexity Low_complexity 1 35 0 2 804 816 290 58 9 chr12 28716837 28717060 -92540470 - MTE2b LTR MaLR -137 242 9 2 804 336 315 0 11 chr12 28717288 28717378 -92540152 + PB1D10 SINE Alu 11 99 -18 2 804 21 0 0 0 chr12 28717391 28717412 -92540118 + AT_rich Low_complexity Low_complexity 1 21 0 2 804 3522 84 24 9 chr12 28718515 28718982 -92538548 - L1_Mus3 LINE L1 0 6638 6165 2 804 387 289 51 26 chr12 28719049 28719205 -92538325 - Lx8 LINE L1 -71 7402 7243 2 804 2799 127 12 33 chr12 28719208 28719480 -92538050 + Lx3A LINE L1 6564 6835 -146 2 804 1287 43 0 0 chr12 28719480 28719621 -92537909 + B1_Mm SINE Alu 1 141 -6 2 804 432 0 0 0 chr12 28719623 28719671 -92537859 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 804 2799 127 12 33 chr12 28719671 28719820 -92537710 + Lx3A LINE L1 6836 6979 -2 2 804 666 157 0 0 chr12 28719822 28719943 -92537587 + GA-rich Low_complexity Low_complexity 2 122 0 2 804 564 15 0 0 chr12 28719944 28720009 -92537521 + (GGAAA)n Simple_repeat Simple_repeat 2 66 0 2 804 356 216 14 0 chr12 28720010 28720084 -92537446 - Lx8 LINE L1 -244 7229 7155 2 804 329 296 111 41 chr12 28720806 28721077 -92536453 + B4A SINE B4 3 292 0 2 804 696 245 7 0 chr12 28722087 28722226 -92535304 + B3 SINE B2 1 140 -76 2 804 516 147 8 25 chr12 28723731 28723850 -92533680 + GA-rich Low_complexity Low_complexity 4 120 0 2 804 285 254 0 0 chr12 28723888 28724002 -92533528 + (CA)n Simple_repeat Simple_repeat 1 114 0 2 804 475 206 7 9 chr12 28724728 28725295 -92532235 + (CAGAGA)n Simple_repeat Simple_repeat 1 565 0 2 804 357 333 67 67 chr12 28726079 28726333 -92531197 + L1ME2 LINE L1 5894 6147 -17 2 804 316 382 19 38 chr12 28727293 28727451 -92530079 + B3A SINE B2 12 166 -32 2 804 213 39 0 0 chr12 28727451 28727477 -92530053 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 804 221 235 57 29 chr12 28727588 28727658 -92529872 - MIRb SINE MIR -83 185 114 2 804 477 303 66 0 chr12 28728678 28728830 -92528700 + RSINE1 SINE B4 4 165 0 2 804 195 342 58 58 chr12 28730836 28730991 -92526539 - L2c LINE L2 -1 3386 3232 2 804 35 0 0 0 chr12 28731759 28731794 -92525736 + AT_rich Low_complexity Low_complexity 1 35 0 2 804 300 341 32 0 chr12 28731909 28732035 -92525495 + L1M4 LINE L1 4060 4189 -1957 2 804 558 146 0 0 chr12 28732073 28732169 -92525361 + (TG)n Simple_repeat Simple_repeat 2 97 0 2 804 188 261 15 0 chr12 28732155 28732220 -92525310 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 804 402 290 5 16 chr12 28732277 28732439 -92525091 - B4A SINE B4 -44 248 56 2 804 24 67 0 0 chr12 28735065 28735110 -92522420 + AT_rich Low_complexity Low_complexity 1 45 0 2 804 636 282 51 58 chr12 28735365 28735656 -92521874 - ORR1E LTR MaLR -31 348 24 2 804 3128 56 15 0 chr12 28735735 28736129 -92521401 - MTB LTR MaLR 0 400 1 2 804 533 309 26 5 chr12 28736913 28736927 -92520603 - B3A SINE B2 0 198 185 2 804 365 0 0 22 chr12 28736927 28736973 -92520557 + (GTGTG)n Simple_repeat Simple_repeat 1 45 0 2 804 603 0 0 0 chr12 28736980 28737047 -92520483 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 804 533 309 26 5 chr12 28737047 28737216 -92520314 - B3A SINE B2 -21 177 6 2 804 315 305 0 0 chr12 28737815 28737910 -92519620 + CT-rich Low_complexity Low_complexity 4 98 0 2 804 242 293 38 75 chr12 28737967 28738100 -92519430 + RMER15 LTR ERVL 3 130 -445 2 804 2339 82 42 0 chr12 28738133 28738464 -92519066 + L1_Mus3 LINE L1 6291 6635 -3 2 804 257 0 30 0 chr12 28738475 28738508 -92519022 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 3 804 6191 121 30 2 chr12 28738547 28739479 -92518051 + RMER17B LTR ERVK 1 958 0 3 804 433 256 58 0 chr12 28739524 28739645 -92517885 + RMER15 LTR ERVL 428 555 -20 2 804 411 21 0 0 chr12 28739845 28739893 -92517637 + (CCA)n Simple_repeat Simple_repeat 3 50 0 3 804 233 163 0 20 chr12 28740786 28740836 -92516694 + CT-rich Low_complexity Low_complexity 1 49 0 3 804 35 41 0 0 chr12 28741490 28741539 -92515991 + AT_rich Low_complexity Low_complexity 1 49 0 3 804 921 338 37 10 chr12 28742046 28742455 -92515075 - Lx8 LINE L1 -560 6913 6494 3 804 539 40 14 0 chr12 28742533 28742607 -92514923 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 3 804 856 290 131 18 chr12 28742637 28743094 -92514436 + Lx8 LINE L1 6959 7467 -6 3 804 327 104 0 0 chr12 28743405 28743453 -92514077 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 3 804 453 324 0 0 chr12 28743505 28743616 -92513914 - RSINE1 SINE B4 -48 117 7 3 804 633 290 91 64 chr12 28744326 28744953 -92512577 - L1MC3 LINE L1 -732 7471 6828 3 804 338 289 11 0 chr12 28745303 28745393 -92512137 - 5S rRNA rRNA -30 91 1 3 804 214 178 0 0 chr12 28745774 28745819 -92511711 + T-rich Low_complexity Low_complexity 1 45 0 3 804 1081 315 99 21 chr12 28746098 28746969 -92510561 - L1MC3 LINE L1 -796 5768 4830 3 804 286 300 85 25 chr12 28747140 28747540 -92509990 - L1MC3 LINE L1 -2719 3845 3422 3 804 255 297 54 21 chr12 28747715 28747808 -92509722 - RMER15 LTR ERVL -109 466 371 3 804 443 148 11 0 chr12 28748062 28748150 -92509380 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 804 1112 276 102 19 chr12 28748471 28748844 -92508686 + MTD LTR MaLR 1 404 -15 3 804 227 340 48 19 chr12 28749111 28749318 -92508212 - L1MC3 LINE L1 -5830 215 3 3 804 26 0 0 0 chr12 28749516 28749542 -92507988 + AT_rich Low_complexity Low_complexity 1 26 0 3 804 1122 237 30 33 chr12 28750727 28751059 -92506471 + Lx9 LINE L1 7130 7460 -184 3 804 320 251 114 48 chr12 28751219 28751240 -92506290 - L1M4 LINE L1 -3183 2963 2935 3 804 450 0 0 0 chr12 28751240 28751290 -92506240 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 804 320 251 114 48 chr12 28751290 28751435 -92506095 - L1M4 LINE L1 -3212 2934 2786 3 804 831 162 173 0 chr12 28751514 28751711 -92505819 - RMER1B Other Other -16 1050 820 3 804 1952 70 4 0 chr12 28751722 28751995 -92505535 - L1_Mur1 LINE L1 -1753 4133 3860 3 804 3620 165 148 28 chr12 28751995 28752869 -92504661 + L1_Mur1 LINE L1 39 1017 -5965 3 804 210 37 0 0 chr12 28753756 28753783 -92503747 + (CTG)n Simple_repeat Simple_repeat 2 28 0 3 804 279 0 0 0 chr12 28753931 28753962 -92503568 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 804 594 0 0 0 chr12 28753962 28754027 -92503503 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 804 2834 214 72 84 chr12 28755508 28756473 -92501057 + RMER17B LTR ERVK 5 958 0 3 804 586 199 20 33 chr12 28756475 28756626 -92500904 + RMER17A-int LTR ERVK 3 151 -1577 3 804 615 242 26 32 chr12 28756643 28756797 -92500733 - RMER17B LTR ERVK -805 153 1 3 804 309 318 157 42 chr12 28757046 28757453 -92500077 + L1MEf LINE L1 1050 1503 -4697 3 804 575 225 82 27 chr12 28757503 28757686 -92499844 - B3A SINE B2 -4 194 2 3 804 1195 68 0 0 chr12 28759622 28759769 -92497761 + B1_Mus2 SINE Alu 1 147 0 3 804 23 0 0 0 chr12 28759778 28759801 -92497729 + AT_rich Low_complexity Low_complexity 1 23 0 3 804 827 305 112 29 chr12 28761202 28761922 -92495608 - L1MA9 LINE L1 -239 6052 5273 3 804 2046 190 58 25 chr12 28761925 28762325 -92495205 - MTC LTR MaLR -8 413 1 3 804 680 80 9 0 chr12 28762526 28762639 -92494891 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 3 804 643 52 10 10 chr12 28762690 28762787 -92494743 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 3 804 188 244 143 24 chr12 28762971 28763055 -92494475 + L3 LINE CR1 2543 2636 -1853 3 804 397 350 53 29 chr12 28763224 28763433 -92494097 + B4 SINE B4 2 215 -77 3 804 464 48 16 0 chr12 28763446 28763509 -92494021 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 804 432 216 0 0 chr12 28765626 28765713 -92491817 + B3A SINE B2 1 87 -129 3 804 449 32 32 0 chr12 28765912 28765974 -92491556 + (TGAA)n Simple_repeat Simple_repeat 3 66 0 3 804 313 325 107 11 chr12 28767160 28767431 -92490099 + L1MA9 LINE L1 4671 4967 -1176 3 804 325 329 19 0 chr12 28767434 28767589 -92489941 + L1MA9 LINE L1 5559 5716 -575 3 804 262 242 31 62 chr12 28767637 28767765 -92489765 + L1MA9 LINE L1 5818 5941 -371 3 804 1148 202 151 10 chr12 28769786 28770091 -92487439 + Lx5 LINE L1 6702 7049 -1 3 804 450 0 0 0 chr12 28772106 28772156 -92485374 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 804 405 211 31 10 chr12 28772294 28772390 -92485140 + B3 SINE B2 119 216 0 3 804 206 319 10 50 chr12 28772708 28772807 -92484723 + MIRb SINE MIR 173 267 -1 3 804 732 23 0 0 chr12 28774156 28774242 -92483288 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 804 576 101 0 0 chr12 28774242 28774330 -92483200 + (CA)n Simple_repeat Simple_repeat 1 89 0 3 804 565 289 79 26 chr12 28775134 28775361 -92482169 - MER2 DNA MER2_type -6 339 101 3 804 21 36 0 0 chr12 28776875 28776903 -92480627 + AT_rich Low_complexity Low_complexity 1 28 0 3 804 1182 188 19 5 chr12 28777041 28777250 -92480280 + MTD LTR MaLR 1 212 -207 3 804 5970 116 30 7 chr12 28777250 28778204 -92479326 + Lx LINE L1 5678 6653 -1 3 804 333 172 0 0 chr12 28778229 28778287 -92479243 + MTD LTR MaLR 196 253 -166 3 804 255 31 0 0 chr12 28778316 28778348 -92479182 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 3 804 305 263 10 40 chr12 28778510 28778609 -92478921 - MER2 DNA MER2_type -86 259 164 3 804 1827 331 55 30 chr12 28778744 28779620 -92477910 + Lx8 LINE L1 6430 7327 -146 3 804 257 350 10 20 chr12 28780956 28781055 -92476475 - RMER15 LTR ERVL -140 435 338 3 804 1128 76 7 0 chr12 28781331 28781475 -92476055 + B1_Mus2 SINE Alu 1 145 -2 3 804 210 37 0 0 chr12 28781475 28781502 -92476028 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 804 32951 77 9 6 chr12 28781644 28787428 -92470102 + L1Md_F2 LINE L1 575 6381 -201 3 804 5607 86 0 0 chr12 28787425 28788241 -92469289 - L1_Mm LINE L1 -2342 3541 2726 3 804 269 120 0 0 chr12 28788241 28788291 -92469239 + L1Md_F2 LINE L1 6526 6575 -7 3 804 21 57 0 0 chr12 28788325 28788360 -92469170 + AT_rich Low_complexity Low_complexity 1 35 0 3 804 184 398 10 0 chr12 28788519 28788617 -92468913 - MIR3 SINE MIR -9 199 101 3 804 2431 291 109 10 chr12 28789596 28790464 -92467066 - Tigger1 DNA MER2_type -1431 987 34 3 804 6706 190 25 10 chr12 28790634 28792279 -92465251 - Lx5 LINE L1 -11 7039 5356 3 804 655 263 15 25 chr12 28792303 28792502 -92465028 - Lx4B LINE L1 -4 7054 6858 3 804 17208 159 30 11 chr12 28792492 28795880 -92461650 - L1_Mur2 LINE L1 -35 5842 2392 3 804 446 277 67 0 chr12 28796298 28796417 -92461113 + RMER30 DNA MER1_type 39 165 -37 3 804 403 335 43 61 chr12 28796994 28797274 -92460256 - L1MC LINE L1 -1048 5098 4824 3 804 441 0 0 0 chr12 28797958 28798007 -92459523 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 804 461 319 72 34 chr12 28799856 28800119 -92457411 + B4A SINE B4 2 274 -18 3 804 1467 41 5 88 chr12 28800303 28800473 -92457057 + ORR1A1 LTR MaLR 141 303 -43 3 804 4961 55 5 2 chr12 28800473 28801094 -92456436 + L1Md_F2 LINE L1 5957 6579 -3 3 804 1467 41 5 88 chr12 28801094 28801139 -92456391 + ORR1A1 LTR MaLR 304 338 -8 3 804 10463 77 43 54 chr12 28801143 28803243 -92454287 + ORR1A1-int LTR MaLR 1 1963 0 3 804 2820 49 0 17 chr12 28803243 28803595 -92453935 + ORR1A1 LTR MaLR 1 346 0 3 804 2862 129 19 64 chr12 28803595 28804180 -92453350 + RLTR13C1 LTR ERVK 323 871 -112 3 804 477 0 0 0 chr12 28806136 28806189 -92451341 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 804 306 0 0 0 chr12 28806189 28806222 -92451308 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 804 208 128 51 0 chr12 28806389 28806428 -92451102 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 3 804 343 233 16 0 chr12 28806504 28806633 -92450897 + (TGGA)n Simple_repeat Simple_repeat 4 134 0 3 804 956 159 6 0 chr12 28806657 28806833 -92450697 + (TGGG)n Simple_repeat Simple_repeat 2 178 0 3 804 244 258 43 54 chr12 28807122 28807219 -92450311 + PB1D10 SINE Alu 8 103 -14 3 804 667 231 30 0 chr12 28808113 28808247 -92449283 - B3 SINE B2 -5 211 74 3 804 7607 56 9 0 chr12 28808976 28810127 -92447403 + L1_Mus1 LINE L1 5402 6567 0 3 804 330 376 16 0 chr12 28810914 28811039 -92446491 + GA-rich Low_complexity Low_complexity 4 130 0 3 804 926 74 27 0 chr12 28812431 28812580 -92444950 + (TCTA)n Simple_repeat Simple_repeat 4 156 0 3 804 192 184 0 0 chr12 28812598 28812647 -92444883 + CT-rich Low_complexity Low_complexity 2 50 0 3 804 939 278 139 30 chr12 28815783 28816417 -92441113 - Lx8 LINE L1 -1512 5961 5246 3 804 2039 157 81 16 chr12 28817547 28817917 -92439613 + ORR1B1 LTR MaLR 1 394 0 3 804 1242 13 25 0 chr12 28818017 28818176 -92439354 + (CTTTG)n Simple_repeat Simple_repeat 2 164 0 3 804 408 67 0 0 chr12 28818176 28818227 -92439303 - B1_Mus2 SINE Alu -8 139 89 3 804 568 229 187 16 chr12 28819942 28820124 -92437406 - B3 SINE B2 0 216 4 3 804 1076 235 135 14 chr12 28820124 28820405 -92437125 + MTD LTR MaLR 105 419 0 3 804 216 0 0 0 chr12 28820454 28820478 -92437052 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 804 609 14 0 0 chr12 28821104 28821174 -92436356 + (GA)n Simple_repeat Simple_repeat 2 71 0 3 804 490 328 12 6 chr12 28822082 28822254 -92435276 - ORR1D2 LTR MaLR -195 175 3 3 804 22 0 0 0 chr12 28823240 28823262 -92434268 + AT_rich Low_complexity Low_complexity 1 22 0 3 804 1113 63 0 34 chr12 28823456 28823604 -92433926 + B1_Mus1 SINE Alu 2 144 -4 3 804 244 99 70 0 chr12 28824015 28824086 -92433444 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 804 414 0 0 0 chr12 28824407 28824453 -92433077 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 804 826 152 240 6 chr12 28824598 28824777 -92432753 + URR1A DNA MER1_type 6 226 0 3 804 264 310 10 20 chr12 28825118 28825220 -92432310 + (CATATA)n Simple_repeat Simple_repeat 4 104 0 3 804 182 171 0 24 chr12 28825220 28825262 -92432268 + (CATA)n Simple_repeat Simple_repeat 4 44 0 3 804 1186 213 0 0 chr12 28826276 28826501 -92431029 + URR1B DNA MER1_type 1 225 0 3 804 686 229 25 31 chr12 28827257 28827419 -92430111 + RSINE1 SINE B4 5 165 0 4 804 364 125 42 0 chr12 28827444 28827516 -92430014 + (CATA)n Simple_repeat Simple_repeat 2 76 0 4 804 403 211 55 11 chr12 28828139 28828230 -92429300 + RSINE1 SINE B4 15 109 -56 4 804 228 0 0 0 chr12 28828535 28828569 -92428961 + L1_Mus2 LINE L1 6531 6564 -2 4 804 349 53 0 35 chr12 28829041 28829099 -92428431 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 4 804 3872 104 74 5 chr12 28829099 28829735 -92427795 - Lx2 LINE L1 -27 6970 6291 4 804 387 103 0 0 chr12 28829734 28829792 -92427738 + Lx2 LINE L1 6237 6294 -703 4 804 387 0 0 0 chr12 28830718 28830761 -92426769 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 804 725 309 85 26 chr12 28830787 28831498 -92426032 - L1M2 LINE L1 -395 5908 5102 4 804 231 205 0 0 chr12 28831512 28831551 -92425979 - B4A SINE B4 -81 211 173 4 804 1122 292 96 26 chr12 28831551 28831907 -92425623 - L1M2 LINE L1 -1097 5046 4636 4 804 279 0 0 0 chr12 28831907 28831938 -92425592 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 804 1122 292 96 26 chr12 28831938 28832395 -92425135 - L1M2 LINE L1 -1508 4635 4176 4 804 369 43 0 0 chr12 28834440 28834487 -92423043 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 805 594 0 0 0 chr12 28836347 28836413 -92421117 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 805 198 0 0 0 chr12 28839012 28839034 -92418496 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 805 401 264 205 16 chr12 28839528 28839655 -92417875 + B3A SINE B2 1 151 -47 4 805 870 88 0 0 chr12 28839657 28839782 -92417748 + (TC)n Simple_repeat Simple_repeat 1 125 0 4 805 474 18 0 0 chr12 28839782 28839836 -92417694 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 805 1570 263 96 32 chr12 28839860 28840414 -92417116 + Lx8 LINE L1 6875 7463 -10 4 805 1675 138 100 20 chr12 28841322 28841663 -92415867 - RLTR9A LTR ERVK 0 368 1 4 805 321 26 0 0 chr12 28843018 28843056 -92414474 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 805 786 275 33 0 chr12 28843487 28843669 -92413861 - B3 SINE B2 -28 188 1 4 805 714 268 8 12 chr12 28843709 28843912 -92413618 - B3 SINE B2 -3 195 2 4 805 482 353 77 34 chr12 28845129 28845337 -92412193 + B4A SINE B4 5 221 -71 4 805 644 133 35 0 chr12 28845869 28845974 -92411556 + ORR1A2 LTR MaLR 1 109 -218 4 805 1153 101 12 12 chr12 28845974 28846144 -92411386 + B2_Mm2 SINE B2 2 171 -24 4 805 36430 46 0 3 chr12 28846145 28851598 -92405932 + L1Md_T LINE L1 59 5589 -297 4 805 9086 28 0 0 chr12 28851598 28852594 -92404936 + L1Md_T LINE L1 5590 6585 0 4 805 848 144 0 0 chr12 28852812 28852937 -92404593 + RMER15 LTR ERVL 346 470 -105 4 805 431 0 37 0 chr12 28852937 28852991 -92404539 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 4 805 1463 129 17 13 chr12 28853001 28853237 -92404293 + ORR1A2 LTR MaLR 110 346 0 4 805 2360 125 11 13 chr12 28853237 28853619 -92403911 + ORR1A2-int LTR MaLR 1 381 -1582 4 805 2482 108 5 11 chr12 28853638 28854011 -92403519 + ORR1A2-int LTR MaLR 1593 1963 0 4 805 2169 114 35 9 chr12 28854011 28854330 -92403200 + ORR1A2 LTR MaLR 1 327 0 4 805 1103 221 124 37 chr12 28855091 28855362 -92402168 - RMER17C LTR ERVK -32 378 103 4 805 279 0 0 0 chr12 28855362 28855393 -92402137 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 805 438 20 0 0 chr12 28855393 28855443 -92402087 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 805 1103 221 124 37 chr12 28855443 28855518 -92402012 - RMER17C LTR ERVK -308 102 2 4 805 186 179 0 0 chr12 28855720 28855748 -92401782 - MIRb SINE MIR -195 73 46 4 805 234 176 0 0 chr12 28858162 28858213 -92399317 + (TTG)n Simple_repeat Simple_repeat 2 52 0 4 805 272 235 27 81 chr12 28858502 28858576 -92398954 + ID4_ SINE ID 1 70 -13 4 805 1205 46 17 17 chr12 28858588 28858766 -92398764 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 4 805 319 282 126 19 chr12 28858946 28859105 -92398425 + MER63D DNA AcHobo 195 370 -691 4 805 702 0 0 0 chr12 28859272 28859350 -92398180 + (TC)n Simple_repeat Simple_repeat 2 79 0 4 805 29 0 0 0 chr12 28859659 28859688 -92397842 + AT_rich Low_complexity Low_complexity 1 29 0 4 805 1111 64 50 0 chr12 28859876 28860016 -92397514 - B1_Mus2 SINE Alu 0 147 1 4 805 1829 174 102 3 chr12 28861616 28861950 -92395580 + ORR1B2 LTR MaLR 1 367 0 4 805 248 230 46 0 chr12 28861997 28862084 -92395446 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 4 805 392 320 78 26 chr12 28862528 28862759 -92394771 - L1MC4a LINE L1 -1452 6430 6188 4 805 278 301 108 35 chr12 28862760 28862963 -92394567 - MLT1C LTR MaLR 0 467 250 4 805 22 70 0 0 chr12 28864068 28864111 -92393419 + AT_rich Low_complexity Low_complexity 1 43 0 4 805 5786 185 67 6 chr12 28865086 28866169 -92391361 + Lx5 LINE L1 5901 7050 0 4 805 299 211 0 11 chr12 28866921 28867012 -92390518 + (CATATA)n Simple_repeat Simple_repeat 5 94 0 4 805 538 312 6 48 chr12 28868378 28868546 -92388984 - RSINE1 SINE B4 -1 164 4 4 805 842 231 97 44 chr12 28869164 28869503 -92388027 + L1MA5 LINE L1 5665 6021 -279 4 805 234 0 0 0 chr12 28869890 28869916 -92387614 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 805 207 0 0 0 chr12 28869926 28869949 -92387581 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 805 304 200 20 0 chr12 28869950 28870050 -92387480 + (CA)n Simple_repeat Simple_repeat 2 103 0 4 805 456 183 0 0 chr12 28870610 28870703 -92386827 + (TG)n Simple_repeat Simple_repeat 1 93 0 4 805 377 310 0 72 chr12 28871020 28871145 -92386385 + MTEa LTR MaLR 1 116 -263 4 805 332 271 96 14 chr12 28871201 28871347 -92386183 + MTEa LTR MaLR 206 363 -16 4 805 453 318 104 43 chr12 28871739 28872179 -92385351 - L1MEc LINE L1 -4013 2387 1921 4 805 1727 201 61 41 chr12 28872474 28872837 -92384693 - MTA_Mm LTR MaLR 0 370 1 4 805 23 0 0 0 chr12 28873871 28873894 -92383636 + AT_rich Low_complexity Low_complexity 1 23 0 4 805 907 230 68 0 chr12 28873974 28874165 -92383365 - B3 SINE B2 -7 209 6 4 805 352 75 60 0 chr12 28874524 28874591 -92382939 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 4 805 314 161 18 0 chr12 28874593 28874649 -92382881 - HAL1-3A_ME LINE L1 -828 2030 1974 4 805 1154 108 32 2 chr12 28874851 28875050 -92382480 - MTA_Mm-int LTR MaLR -1151 219 1 4 805 3416 49 13 0 chr12 28875050 28875441 -92382089 - MTA_Mm LTR MaLR 0 396 1 4 805 1553 276 23 33 chr12 28875700 28876187 -92381343 + Lx9 LINE L1 6667 7148 -496 4 805 39166 10 2 7 chr12 28876186 28881585 -92375945 + L1Md_A LINE L1 216 5586 -297 4 805 9440 13 0 0 chr12 28881585 28882581 -92374949 + L1Md_A LINE L1 5587 6582 0 4 805 210 105 0 0 chr12 28882594 28882632 -92374898 + (A)n Simple_repeat Simple_repeat 1 38 0 4 805 225 0 0 0 chr12 28882804 28882829 -92374701 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 805 27 0 0 0 chr12 28882911 28882938 -92374592 + AT_rich Low_complexity Low_complexity 1 27 0 4 805 672 335 35 16 chr12 28883602 28883857 -92373673 + B4A SINE B4 33 292 0 4 805 417 221 0 0 chr12 28883864 28883968 -92373562 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 805 823 181 68 5 chr12 28885723 28885894 -92371636 - MTD LTR MaLR -224 176 1 4 805 23 0 0 0 chr12 28885911 28885934 -92371596 + AT_rich Low_complexity Low_complexity 1 23 0 4 805 249 143 71 0 chr12 28886301 28886343 -92371187 - RLTR19 LTR ERVK 0 499 455 4 805 3035 138 94 4 chr12 28886352 28886861 -92370669 - RLTR33 LTR ERVK -123 555 1 4 805 274 298 35 0 chr12 28888273 28888414 -92369116 + (TATATG)n Simple_repeat Simple_repeat 2 147 0 4 805 324 276 9 0 chr12 28888274 28888379 -92369151 + (TG)n Simple_repeat Simple_repeat 1 106 0 4 805 396 135 0 0 chr12 28888417 28888491 -92369039 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 805 316 323 6 24 chr12 28888502 28888741 -92368789 + (TG)n Simple_repeat Simple_repeat 1 234 0 4 805 22 0 0 0 chr12 28888782 28888804 -92368726 + AT_rich Low_complexity Low_complexity 1 22 0 4 805 186 318 166 37 chr12 28889183 28889346 -92368184 + MIRc SINE MIR 31 214 -54 4 805 369 273 145 48 chr12 28889766 28890035 -92367495 + Lx8 LINE L1 7179 7473 0 4 805 255 324 61 35 chr12 28890048 28890163 -92367367 + MIR SINE MIR 36 153 -109 4 805 217 307 66 105 chr12 28890649 28890907 -92366623 - L2 LINE L2 -812 2607 2360 4 805 240 289 139 59 chr12 28891067 28891269 -92366261 + ORR1E LTR MaLR 85 302 -57 4 805 188 316 147 22 chr12 28891734 28891870 -92365660 + MIR SINE MIR 42 194 -68 4 805 579 270 152 13 chr12 28893882 28894118 -92363412 - Lx8 LINE L1 -2 7471 7203 4 805 7587 37 0 3 chr12 28894186 28895141 -92362389 - L1Md_F3 LINE L1 0 6584 5633 4 805 587 128 82 41 chr12 28895169 28895291 -92362239 - ORR1B1-int LTR MaLR -1815 148 22 4 805 2109 133 12 15 chr12 28895313 28895655 -92361875 - ORR1B1 LTR MaLR -13 381 41 4 805 9750 211 40 69 chr12 28895661 28898529 -92359001 - MYSERV6-int LTR ERVK -6060 2899 117 4 805 1055 83 7 20 chr12 28898628 28898776 -92358754 - B1_Mus1 SINE Alu -2 146 1 4 805 530 269 104 73 chr12 28899429 28899866 -92357664 - RLTR12B LTR ERVK -21 338 6 4 805 652 22 11 22 chr12 28900042 28900133 -92357397 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 4 805 625 302 7 7 chr12 28900536 28900686 -92356844 + RSINE1 SINE B4 16 165 0 4 805 190 95 23 23 chr12 28901710 28901753 -92355777 + (TAA)n Simple_repeat Simple_repeat 2 44 0 4 805 2265 192 13 8 chr12 28902463 28902856 -92354674 + MTC LTR MaLR 19 413 -8 4 805 31 68 0 0 chr12 28903691 28903750 -92353780 + AT_rich Low_complexity Low_complexity 1 59 0 4 805 279 294 88 61 chr12 28904735 28905180 -92352350 + L1MC3 LINE L1 3578 4034 -2112 4 805 252 284 158 29 chr12 28905311 28905659 -92351871 + L1MC3 LINE L1 4392 4784 -1362 4 805 3949 102 23 147 chr12 28905916 28906741 -92350789 + L1VL2 LINE L1 99 821 -5514 4 805 13140 110 19 19 chr12 28906739 28909521 -92348009 + L1Md_F LINE L1 407 3190 -627 4 805 393 277 50 90 chr12 28910337 28910658 -92346872 + L1MC3 LINE L1 5794 6101 -1684 4 805 423 0 0 0 chr12 28911136 28911183 -92346347 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 805 357 75 0 0 chr12 28911183 28911236 -92346294 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 805 213 219 19 64 chr12 28911410 28911566 -92345964 + T-rich Low_complexity Low_complexity 2 150 0 4 805 339 321 0 45 chr12 28911568 28911656 -92345874 - B4A SINE B4 -206 86 3 4 805 999 25 0 0 chr12 28911773 28911891 -92345639 + (TC)n Simple_repeat Simple_repeat 1 118 0 4 805 234 0 0 0 chr12 28911891 28911916 -92345614 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 805 363 359 92 27 chr12 28912275 28912796 -92344734 + L1M5 LINE L1 2496 3050 -3096 4 805 491 180 0 0 chr12 28913293 28913382 -92344148 - Lx9 LINE L1 -683 6961 6873 4 805 789 245 79 9 chr12 28913441 28913655 -92343875 - RLTR18B LTR ERVK 0 512 284 5 805 711 242 38 13 chr12 28913704 28913863 -92343667 - RLTR18B LTR ERVK -319 193 31 5 805 375 292 0 81 chr12 28913962 28914085 -92343445 - B3A SINE B2 0 198 86 5 805 634 87 31 23 chr12 28916401 28916531 -92340999 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 5 805 186 103 0 0 chr12 28916535 28916564 -92340966 + (CAGA)n Simple_repeat Simple_repeat 1 29 0 5 805 674 327 121 20 chr12 28916928 28917517 -92340013 + Lx8 LINE L1 6796 7472 -1 5 805 336 331 122 45 chr12 28917806 28918141 -92339389 - MLT1D LTR MaLR -9 496 136 5 805 1798 111 69 63 chr12 28919515 28919832 -92337698 + ORR1A2 LTR MaLR 1 319 -8 5 805 266 316 0 13 chr12 28920353 28920430 -92337100 + GA-rich Low_complexity Low_complexity 1 76 0 5 805 2199 203 9 37 chr12 28920759 28921347 -92336183 + Lx5 LINE L1 6480 7054 -4 5 805 212 274 30 45 chr12 28921535 28921669 -92335861 + (TATATG)n Simple_repeat Simple_repeat 3 134 0 5 805 361 298 106 10 chr12 28922611 28922737 -92334793 + Lx8 LINE L1 7056 7190 -283 5 805 267 31 0 0 chr12 28922737 28922769 -92334761 + (ATG)n Simple_repeat Simple_repeat 2 33 0 5 805 361 269 42 4 chr12 28922769 28922882 -92334648 + Lx8 LINE L1 7191 7341 -132 5 805 429 190 0 0 chr12 28923548 28923648 -92333882 + CT-rich Low_complexity Low_complexity 1 100 0 5 805 933 123 0 0 chr12 28923649 28923828 -92333702 + (TC)n Simple_repeat Simple_repeat 1 179 0 5 805 405 0 0 0 chr12 28923828 28923872 -92333658 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 805 305 341 16 16 chr12 28924176 28924301 -92333229 - L1MC LINE L1 -857 5289 5165 5 805 206 200 0 0 chr12 28925055 28925090 -92332440 + G-rich Low_complexity Low_complexity 5 39 0 5 805 345 269 19 0 chr12 28925780 28925884 -92331646 + Lx8 LINE L1 5801 5906 -1567 5 805 523 286 34 7 chr12 28926050 28926198 -92331332 + B3A SINE B2 1 152 -46 5 805 327 19 0 55 chr12 28926331 28926386 -92331144 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 805 359 132 0 26 chr12 28926386 28926464 -92331066 + (CAGAGA)n Simple_repeat Simple_repeat 2 77 0 5 805 180 0 0 0 chr12 28926922 28926942 -92330588 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 805 318 205 33 67 chr12 28927217 28927269 -92330261 + L1MA8 LINE L1 6132 6176 -115 5 805 5781 65 8 20 chr12 28927269 28928036 -92329494 - L1Md_F2 LINE L1 -2 6580 5823 5 805 318 209 58 62 chr12 28928036 28928134 -92329396 + L1MA8 LINE L1 6177 6291 0 5 805 1949 88 31 0 chr12 28928145 28928406 -92329124 + ORR1A2 LTR MaLR 1 269 -58 5 805 24670 21 0 0 chr12 28928408 28931423 -92326107 + L1Md_T LINE L1 2572 5586 -297 5 805 8038 56 0 0 chr12 28931423 28932419 -92325111 + L1Md_T LINE L1 5587 6582 0 5 805 512 32 0 0 chr12 28932435 28932497 -92325033 + ORR1A2 LTR MaLR 257 318 -8 5 805 1169 82 0 0 chr12 28932843 28932990 -92324540 + B1_Mus1 SINE Alu 1 147 -1 5 805 275 324 67 0 chr12 28933563 28933668 -92323862 - MER57C2 LTR ERV1 -11 423 312 5 805 21 0 0 0 chr12 28934968 28934989 -92322541 + AT_rich Low_complexity Low_complexity 1 21 0 5 805 21 0 0 0 chr12 28936096 28936117 -92321413 + AT_rich Low_complexity Low_complexity 1 21 0 5 805 810 257 105 37 chr12 28936157 28936537 -92320993 - Lx9 LINE L1 -49 7595 7190 5 805 7072 129 35 1 chr12 28937822 28938629 -92318901 + Lx2 LINE L1 5855 6686 -311 5 805 180 0 0 0 chr12 28938629 28938649 -92318881 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 5 805 7072 129 35 1 chr12 28938649 28938939 -92318591 + Lx2 LINE L1 6687 6988 -9 5 805 1030 130 11 0 chr12 28938939 28939116 -92318414 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 805 791 132 15 0 chr12 28939117 28939253 -92318277 + (GGAA)n Simple_repeat Simple_repeat 1 138 0 5 805 183 80 0 0 chr12 28939253 28939278 -92318252 + (CGGG)n Simple_repeat Simple_repeat 1 25 0 5 805 377 284 49 6 chr12 28939278 28939441 -92318089 - Lx8 LINE L1 -1001 6472 6303 5 805 225 230 45 159 chr12 28939527 28939615 -92317915 + MTEa LTR MaLR 121 198 -181 5 805 541 276 26 36 chr12 28940852 28941044 -92316486 + Lx8 LINE L1 7160 7349 -124 5 805 627 53 0 31 chr12 28941044 28941141 -92316389 - L1Md_F2 LINE L1 -2 6580 6487 5 805 7974 30 1 0 chr12 28941156 28942819 -92314711 - L1Md_T LINE L1 -1 6581 4918 5 805 969 84 19 0 chr12 28942978 28943132 -92314398 + (TAGA)n Simple_repeat Simple_repeat 2 158 0 5 805 1444 299 124 67 chr12 28944096 28947426 -92310104 + L1MA8 LINE L1 2718 6226 -65 5 805 323 254 6 33 chr12 28948805 28948988 -92308542 + (TATG)n Simple_repeat Simple_repeat 1 178 0 5 805 183 306 0 0 chr12 28948973 28949058 -92308472 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 805 448 124 22 22 chr12 28949108 28949199 -92308331 + (TATG)n Simple_repeat Simple_repeat 4 94 0 5 805 436 311 39 45 chr12 28949212 28949367 -92308163 - RSINE1 SINE B4 0 165 12 5 805 2230 116 17 0 chr12 28949616 28949970 -92307560 + L1VL4 LINE L1 451 810 -5492 5 805 5935 87 13 8 chr12 28949981 28950950 -92306580 + MusHAL1 LINE L1 34 1007 -1705 5 805 2884 120 7 79 chr12 28950937 28951480 -92306050 + Lx2 LINE L1 5237 5740 -143 5 805 4927 127 15 1 chr12 28951478 28952268 -92305262 + Lx2 LINE L1 5843 6643 -354 5 805 1216 120 66 9 chr12 28952268 28952479 -92305051 + Lx2 LINE L1 6775 6997 0 5 805 337 290 10 51 chr12 28953248 28953346 -92304184 + Tigger5 DNA MER2_type 2312 2405 -1 5 805 32 26 0 0 chr12 28955114 28955153 -92302377 + AT_rich Low_complexity Low_complexity 1 39 0 5 805 272 286 38 67 chr12 28955789 28955894 -92301636 + MER58A DNA MER1_type 4 105 -119 5 805 361 306 60 40 chr12 28956294 28956444 -92301086 - MIR SINE MIR -57 205 53 5 805 2159 184 174 6 chr12 28957756 28958226 -92299304 + RMER15 LTR ERVL 27 575 0 5 805 2129 153 44 6 chr12 28958415 28958777 -92298753 - ORR1C1 LTR MaLR 0 378 3 5 805 254 301 144 0 chr12 28958779 28958925 -92298605 + LTR50 LTR ERVL 42 208 -587 5 805 390 329 148 70 chr12 28959018 28959289 -92298241 + B4A SINE B4 1 292 0 5 805 253 100 40 0 chr12 28959289 28959339 -92298191 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 805 377 281 119 65 chr12 28959488 28959782 -92297748 + L1M4 LINE L1 2116 2429 -3714 5 805 417 354 158 14 chr12 28959981 28960425 -92297105 + L1M4 LINE L1 2675 3182 -2964 5 805 273 262 69 35 chr12 28960776 28960950 -92296580 + L1M2 LINE L1 3284 3463 -2680 5 805 323 309 0 35 chr12 28960945 28961089 -92296441 + L1M2 LINE L1 3657 3795 -2348 5 805 258 229 277 5 chr12 28961135 28961319 -92296211 + L1MA9 LINE L1 5800 6033 -279 5 805 232 276 0 26 chr12 28961665 28961743 -92295787 + CT-rich Low_complexity Low_complexity 3 78 0 5 805 265 229 16 0 chr12 28962251 28962312 -92295218 - MER58A DNA MER1_type -144 80 19 5 805 776 274 0 0 chr12 28962532 28962711 -92294819 + B3A SINE B2 2 180 -18 5 805 826 248 72 18 chr12 28963868 28964090 -92293440 + MTEa LTR MaLR 116 349 -30 5 805 393 75 0 0 chr12 28964094 28964147 -92293383 + (TGG)n Simple_repeat Simple_repeat 1 53 0 5 805 1697 207 89 3 chr12 28964199 28964568 -92292962 - MTD LTR MaLR -7 412 12 5 805 880 274 17 129 chr12 28964592 28964632 -92292898 + MTE2a LTR MaLR 30 56 -323 5 805 602 58 11 0 chr12 28964632 28964719 -92292811 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 5 805 880 274 17 129 chr12 28964719 28965026 -92292504 + MTE2a LTR MaLR 57 338 -41 5 805 271 146 21 0 chr12 28965081 28965129 -92292401 + MTE2a LTR MaLR 311 359 0 5 805 333 0 0 0 chr12 28966401 28966438 -92291092 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 806 36 0 0 0 chr12 28967432 28967468 -92290062 + AT_rich Low_complexity Low_complexity 1 36 0 5 806 2167 121 43 11 chr12 28968072 28968424 -92289106 + Lx LINE L1 6286 6648 -6 5 806 459 316 90 53 chr12 28968570 28968947 -92288583 + L2 LINE L2 2470 2860 -559 5 806 2000 176 140 11 chr12 28968959 28969431 -92288099 + Lx9 LINE L1 6956 7488 -156 5 806 450 127 0 0 chr12 28969441 28969512 -92288018 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 806 363 60 0 0 chr12 28969512 28969562 -92287968 + (CCA)n Simple_repeat Simple_repeat 1 50 0 5 806 240 35 0 0 chr12 28971839 28971868 -92285662 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 806 1159 62 7 0 chr12 28972102 28972248 -92285282 + B1_Mus1 SINE Alu 1 147 -1 5 806 29 0 0 0 chr12 28972253 28972282 -92285248 + AT_rich Low_complexity Low_complexity 1 29 0 5 806 496 289 113 9 chr12 28972377 28972590 -92284940 + Lx8 LINE L1 7155 7389 -84 5 806 597 266 92 0 chr12 28975166 28975339 -92282191 - B3 SINE B2 -27 189 1 5 806 828 0 0 0 chr12 28976217 28976309 -92281221 + (TCC)n Simple_repeat Simple_repeat 3 94 0 5 806 825 11 0 0 chr12 28976329 28976423 -92281107 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 806 830 304 44 51 chr12 28976455 28976888 -92280642 - Lx8 LINE L1 -179 7294 6865 5 806 789 271 49 33 chr12 28977207 28977461 -92280069 + B4A SINE B4 50 292 0 5 806 920 236 54 5 chr12 28977526 28977730 -92279800 - B3 SINE B2 0 216 3 5 806 374 359 8 0 chr12 28977770 28977887 -92279643 + RSINE1 SINE B4 4 121 -44 5 806 429 20 0 0 chr12 28977899 28977949 -92279581 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 806 492 279 36 118 chr12 28978727 28978922 -92278608 - RMER12 LTR ERVK 0 1322 1144 5 806 3960 222 90 71 chr12 28978967 28979438 -92278092 - RMER12 LTR ERVK -85 1237 754 5 806 1503 28 0 0 chr12 28979438 28979618 -92277912 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 5 806 3960 222 90 71 chr12 28979618 28980360 -92277170 - RMER12 LTR ERVK -569 753 1 5 806 297 0 0 0 chr12 28980756 28980789 -92276741 + (TTG)n Simple_repeat Simple_repeat 2 34 0 5 806 357 24 0 0 chr12 28980903 28980945 -92276585 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 806 22 0 0 0 chr12 28981095 28981117 -92276413 + AT_rich Low_complexity Low_complexity 1 22 0 5 806 372 316 86 54 chr12 28981392 28981613 -92275917 + L1M4c LINE L1 1471 1698 -4686 5 806 1531 184 39 13 chr12 28983136 28983511 -92274019 - ORR1A4-int LTR MaLR -886 1077 328 5 806 1324 176 30 68 chr12 28983470 28983733 -92273797 - MT2B LTR ERVL -314 287 35 5 806 4362 149 27 50 chr12 28983538 28984363 -92273167 - ORR1A4-int LTR MaLR -1157 806 1 5 806 1758 151 9 76 chr12 28984367 28984711 -92272819 - ORR1A4 LTR MaLR -8 321 1 5 806 31 44 0 0 chr12 28984921 28984966 -92272564 + AT_rich Low_complexity Low_complexity 1 45 0 5 806 201 74 0 0 chr12 28985048 28985075 -92272455 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 5 806 399 310 102 19 chr12 28985782 28986048 -92271482 + Lx8 LINE L1 6811 7098 -375 6 806 21 0 0 0 chr12 28986644 28986665 -92270865 + AT_rich Low_complexity Low_complexity 1 21 0 6 806 290 276 86 0 chr12 28986818 28986934 -92270596 - L1M5 LINE L1 -256 5868 5743 6 806 211 250 26 65 chr12 28987280 28987357 -92270173 + MIRc SINE MIR 76 149 -119 6 806 224 211 0 0 chr12 28988279 28988317 -92269213 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 806 752 273 106 41 chr12 28988746 28988890 -92268640 + Lx8 LINE L1 7107 7243 -230 6 806 926 217 113 0 chr12 28988890 28989093 -92268437 + URR1A DNA MER1_type 1 226 0 6 806 752 273 106 41 chr12 28989093 28989288 -92268242 + Lx8 LINE L1 7244 7468 -5 6 806 355 278 0 20 chr12 28989357 28989456 -92268074 + PB1D10 SINE Alu 21 117 0 6 806 369 0 0 0 chr12 28989629 28989670 -92267860 + (TATG)n Simple_repeat Simple_repeat 3 43 0 6 806 657 264 106 45 chr12 28989734 28989904 -92267626 + B3 SINE B2 1 182 -34 6 806 203 81 0 51 chr12 28989904 28989943 -92267587 + (CATA)n Simple_repeat Simple_repeat 2 38 0 6 806 657 264 106 45 chr12 28989943 28989970 -92267560 + B3 SINE B2 183 210 -6 6 806 246 271 32 153 chr12 28990853 28991010 -92266520 + RMER15 LTR ERVL 422 559 -16 6 806 396 0 0 0 chr12 28991713 28991757 -92265773 + (TTA)n Simple_repeat Simple_repeat 2 45 0 6 806 328 172 60 19 chr12 28993341 28993768 -92263762 + (CA)n Simple_repeat Simple_repeat 1 444 0 6 806 195 212 25 12 chr12 28993778 28993859 -92263671 + (CATATA)n Simple_repeat Simple_repeat 1 82 0 6 806 21 0 0 0 chr12 28994650 28994671 -92262859 + AT_rich Low_complexity Low_complexity 1 21 0 6 806 256 274 0 0 chr12 28994768 28994852 -92262678 - L1MA8 LINE L1 -22 6269 6186 6 806 279 0 0 0 chr12 28995959 28995990 -92261540 + (A)n Simple_repeat Simple_repeat 1 31 0 6 806 2109 91 20 9 chr12 28995990 28996335 -92261195 - Lx3_Mus LINE L1 -648 6361 6013 6 806 4716 78 22 3 chr12 28996335 28996969 -92260561 + Lx3_Mus LINE L1 6353 6998 -11 6 806 3459 28 0 2 chr12 28997442 28997839 -92259691 - MTA_Mm LTR MaLR 0 396 1 6 806 40 0 0 0 chr12 28998211 28998251 -92259279 + AT_rich Low_complexity Low_complexity 1 40 0 6 806 559 279 21 0 chr12 28998454 28998594 -92258936 + B1F1 SINE Alu 1 143 -6 6 806 1495 185 114 20 chr12 28998957 28999176 -92258354 + ORR1D1 LTR MaLR 1 223 -151 6 806 185 0 40 0 chr12 28999176 28999201 -92258329 + (CCTG)n Simple_repeat Simple_repeat 1 26 0 6 806 1495 185 114 20 chr12 28999201 28999323 -92258207 + ORR1D1 LTR MaLR 224 374 0 6 806 826 324 50 0 chr12 28999485 28999843 -92257687 + Charlie2a DNA MER1_type 822 1197 -1664 6 806 943 230 50 5 chr12 29000309 29000510 -92257020 + B3 SINE B2 2 211 -5 1 806 2214 193 2 0 chr12 29001084 29001494 -92256036 - MTC LTR MaLR -9 412 2 2 806 697 263 41 26 chr12 29001617 29001812 -92255718 + B3A SINE B2 1 198 0 3 806 252 207 43 54 chr12 29001879 29001955 -92255575 + Charlie2b DNA MER1_type 2647 2721 -61 4 806 314 252 55 69 chr12 29001955 29002077 -92255453 - MTEa LTR MaLR -3 376 252 5 806 2160 153 59 5 chr12 29002077 29002451 -92255079 + ORR1B1 LTR MaLR 1 394 0 6 806 314 252 55 69 chr12 29002451 29002473 -92255057 - MTEa LTR MaLR -128 251 234 5 806 387 294 0 8 chr12 29002808 29002928 -92254602 + L1MA9 LINE L1 6175 6293 -19 7 806 240 283 21 11 chr12 29003842 29003935 -92253595 + L1MC3 LINE L1 7242 7335 -450 8 806 231 309 0 14 chr12 29005169 29005238 -92252292 - B4 SINE B4 -4 288 221 9 806 545 281 86 40 chr12 29005255 29005429 -92252101 + B3A SINE B2 1 182 -16 1 806 22 35 0 0 chr12 29005489 29005518 -92252012 + AT_rich Low_complexity Low_complexity 1 29 0 1 806 257 304 127 50 chr12 29007347 29007411 -92250119 + B4 SINE B4 1 80 -212 1 806 180 0 0 0 chr12 29007411 29007431 -92250099 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 806 257 304 127 50 chr12 29007431 29007626 -92249904 + B4 SINE B4 81 279 -13 1 806 1232 229 143 77 chr12 29007777 29008169 -92249361 - MTD LTR MaLR 0 419 2 1 806 498 341 60 8 chr12 29009553 29009941 -92247589 + L1M2 LINE L1 2616 3032 -3114 1 806 3238 226 72 54 chr12 29010157 29011004 -92246526 + RMER1C Other Other 473 1334 -8 1 806 285 235 0 29 chr12 29011077 29011147 -92246383 + MIRb SINE MIR 103 170 -98 1 806 25 51 0 0 chr12 29011147 29011186 -92246344 + AT_rich Low_complexity Low_complexity 1 39 0 1 806 883 236 14 14 chr12 29011197 29011408 -92246122 + B3 SINE B2 6 216 0 1 806 1668 241 88 23 chr12 29011426 29011943 -92245587 + Lx8 LINE L1 5367 5920 -1776 2 806 1967 123 3 51 chr12 29011984 29012319 -92245211 - ORR1A2 LTR MaLR -8 319 1 2 806 3207 321 46 40 chr12 29012431 29012582 -92244948 + Lx8 LINE L1 6067 6207 -1266 2 806 1225 61 0 0 chr12 29012582 29012729 -92244801 + B1_Mm SINE Alu 1 147 0 2 806 3207 321 46 40 chr12 29012729 29013970 -92243560 + Lx8 LINE L1 6208 7467 -6 2 806 524 284 111 58 chr12 29014001 29014280 -92243250 + L1M2 LINE L1 3039 3339 -2804 1 806 2822 41 0 47 chr12 29014280 29014642 -92242888 + IAPLTR4 LTR ERVK 1 345 0 2 806 524 267 105 55 chr12 29014642 29014865 -92242665 + L1M2 LINE L1 3340 3583 -2560 1 806 314 138 17 0 chr12 29018361 29018419 -92239111 + GA-rich Low_complexity Low_complexity 2 60 0 2 806 205 146 0 40 chr12 29018841 29018891 -92238639 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2 806 534 268 42 0 chr12 29019718 29019860 -92237670 - B1F SINE Alu -1 148 1 2 806 332 306 74 39 chr12 29019863 29020121 -92237409 - L1M3d LINE L1 -4265 2584 2318 2 806 1134 73 0 0 chr12 29020252 29020472 -92237058 + (TC)n Simple_repeat Simple_repeat 1 220 0 2 806 2990 38 0 88 chr12 29021287 29021687 -92235843 - RLTR10B2 LTR ERVK 0 365 1 2 806 4468 132 13 3 chr12 29021687 29022366 -92235164 - IAPEY3-int LTR ERVK 0 7680 6995 2 806 1445 109 140 0 chr12 29022370 29022591 -92234939 - IAP-d-int LTR ERVK -1287 5255 5004 3 806 561 306 28 27 chr12 29022603 29022997 -92234533 - IAP-d-int LTR ERVK -6015 1566 822 3 806 2602 64 36 3 chr12 29023022 29023194 -92234336 - RLTR10-int LTR ERVK -995 992 809 3 806 3270 35 20 0 chr12 29023194 29023589 -92233941 - L1Md_F3 LINE L1 0 6584 6182 3 806 2602 64 36 3 chr12 29023589 29023746 -92233784 - RLTR10-int LTR ERVK -1179 808 653 3 806 329 111 0 0 chr12 29023749 29023794 -92233736 - RLTR10-int LTR ERVK -6405 137 93 3 806 493 64 53 35 chr12 29023794 29023908 -92233622 + CT-rich Low_complexity Low_complexity 4 119 0 3 806 1363 58 3 2 chr12 29024012 29024189 -92233341 - RLTR10-int LTR ERVK -7314 267 41 3 806 2565 32 34 31 chr12 29024189 29024544 -92232986 - RLTR10B2 LTR ERVK -9 356 1 3 806 339 383 55 39 chr12 29024568 29024929 -92232601 - L1M3d LINE L1 -5436 1333 967 2 806 387 0 0 0 chr12 29024935 29024978 -92232552 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 806 353 262 10 0 chr12 29025530 29025633 -92231897 - MER58C DNA MER1_type 0 215 112 3 806 556 209 160 27 chr12 29026581 29026768 -92230762 + B3 SINE B2 5 216 0 3 806 22 0 0 0 chr12 29027115 29027137 -92230393 + AT_rich Low_complexity Low_complexity 1 22 0 3 806 603 266 4 16 chr12 29027178 29027341 -92230189 - ID_B1 SINE B4 -11 213 63 3 806 252 258 15 22 chr12 29028896 29029031 -92228499 + GA-rich Low_complexity Low_complexity 4 137 0 4 806 276 340 13 46 chr12 29029270 29029421 -92228109 - MLT1E LTR MaLR 0 653 508 4 806 1057 248 81 7 chr12 29030318 29030602 -92226928 - ORR1D2 LTR MaLR 0 370 66 4 806 4085 102 175 2 chr12 29031041 29031668 -92225862 - RMER19A LTR ERVK -1 736 1 4 806 180 0 0 0 chr12 29032067 29032087 -92225443 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 806 22 35 0 0 chr12 29032100 29032129 -92225401 + AT_rich Low_complexity Low_complexity 1 29 0 4 806 2672 281 45 69 chr12 29032444 29032658 -92224872 - Lx9 LINE L1 -267 7377 7185 4 806 279 0 0 0 chr12 29032658 29032689 -92224841 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 806 2672 281 45 69 chr12 29032689 29033508 -92224022 - Lx9 LINE L1 -460 7184 6368 4 806 626 105 0 9 chr12 29033545 29033651 -92223879 + (TA)n Simple_repeat Simple_repeat 1 105 0 4 806 459 0 0 0 chr12 29033824 29033875 -92223655 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 806 244 310 38 128 chr12 29034906 29035039 -92222491 + MLT1A0 LTR MaLR 1 121 -244 5 806 321 113 0 86 chr12 29035061 29035119 -92222411 + MTEb LTR MaLR 122 174 -205 5 806 3503 202 140 56 chr12 29035670 29036599 -92220931 + RMER1B Other Other 47 1053 -13 5 806 585 0 0 0 chr12 29036608 29036673 -92220857 + (TAAAA)n Simple_repeat Simple_repeat 1 65 0 5 806 884 211 16 0 chr12 29036684 29036878 -92220652 + MTEb LTR MaLR 183 379 0 5 806 409 279 9 26 chr12 29038725 29038839 -92218691 + PB1D10 SINE Alu 1 112 -5 5 806 180 0 0 0 chr12 29038857 29038877 -92218653 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 806 426 313 8 38 chr12 29038919 29039052 -92218478 - RSINE1 SINE B4 -34 131 3 5 806 4651 50 2 0 chr12 29039311 29039868 -92217662 - L1_Mus2 LINE L1 -1 6565 6008 5 806 182 200 52 52 chr12 29040130 29040188 -92217342 - MIR SINE MIR -115 93 36 5 806 926 222 9 36 chr12 29040885 29041105 -92216425 + B3 SINE B2 1 214 -2 5 806 235 163 41 0 chr12 29041598 29041647 -92215883 + Lx8 LINE L1 7416 7466 -7 6 806 288 53 0 0 chr12 29042005 29042043 -92215487 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 806 281 329 27 7 chr12 29043079 29043226 -92214304 - L1M4b LINE L1 -5716 1618 1469 6 806 188 135 27 0 chr12 29044284 29044321 -92213209 + CT-rich Low_complexity Low_complexity 1 38 0 6 806 402 185 0 0 chr12 29044498 29044579 -92212951 + GA-rich Low_complexity Low_complexity 1 81 0 6 806 676 223 77 68 chr12 29045131 29045345 -92212185 + B3 SINE B2 10 206 -10 6 806 248 143 18 0 chr12 29045804 29045860 -92211670 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 806 221 212 15 29 chr12 29045904 29045972 -92211558 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 806 382 152 0 21 chr12 29045985 29046079 -92211451 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 806 192 216 0 30 chr12 29046124 29046224 -92211306 + (TG)n Simple_repeat Simple_repeat 2 98 0 6 806 521 192 0 35 chr12 29046235 29046408 -92211122 + (TG)n Simple_repeat Simple_repeat 1 167 0 6 806 737 286 151 0 chr12 29046434 29046686 -92210844 - B4A SINE B4 -1 291 2 6 806 351 0 0 0 chr12 29046909 29046948 -92210582 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 806 433 250 0 49 chr12 29047677 29047799 -92209731 - B3A SINE B2 -80 118 3 6 806 1408 129 43 28 chr12 29047966 29048221 -92209309 + Lx LINE L1 6396 6654 0 7 806 1126 148 0 85 chr12 29048230 29048466 -92209064 + URR1B DNA MER1_type 9 224 -1 7 806 228 35 0 0 chr12 29048633 29048662 -92208868 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 7 806 618 82 0 0 chr12 29049018 29049116 -92208414 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 806 291 71 0 0 chr12 29049116 29049157 -92208373 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 806 186 301 14 14 chr12 29051609 29051683 -92205847 - L2a LINE L2 -6 3420 3347 7 806 287 191 15 0 chr12 29052746 29052814 -92204716 + CT-rich Low_complexity Low_complexity 1 69 0 7 806 261 0 0 0 chr12 29053153 29053182 -92204348 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 806 275 177 16 0 chr12 29053523 29053585 -92203945 + (ATG)n Simple_repeat Simple_repeat 3 65 0 7 806 557 229 47 6 chr12 29053625 29053796 -92203734 - HAL1-2a_MD LINE L1 -502 2522 2345 7 806 524 247 31 6 chr12 29053802 29053961 -92203569 - HAL1-2a_MD LINE L1 -517 2507 2345 8 806 254 246 0 0 chr12 29053961 29054018 -92203512 + (ATGGTG)n Simple_repeat Simple_repeat 5 61 0 8 806 1000 291 43 4 chr12 29054636 29054915 -92202615 + B4 SINE B4 1 290 -2 8 806 1467 212 101 35 chr12 29055622 29055969 -92201561 - ORR1D2 LTR MaLR 0 370 1 8 806 333 279 0 0 chr12 29056947 29057026 -92200504 - ID4_ SINE ID -2 81 3 8 806 231 114 0 0 chr12 29057165 29057200 -92200330 + (CACG)n Simple_repeat Simple_repeat 3 37 0 8 806 212 149 43 0 chr12 29058558 29058605 -92198925 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 8 806 1213 267 21 44 chr12 29058755 29059143 -92198387 - MTEa LTR MaLR 0 379 1 8 806 396 0 0 0 chr12 29059151 29059195 -92198335 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 806 180 152 0 0 chr12 29059198 29059231 -92198299 + GA-rich Low_complexity Low_complexity 4 36 0 8 806 236 352 70 40 chr12 29059442 29059741 -92197789 + LTR16E1 LTR ERVL 205 512 -26 9 806 978 193 66 11 chr12 29059986 29060211 -92197319 - MTE2b LTR MaLR -86 273 59 9 806 324 314 0 0 chr12 29060212 29060298 -92197232 - MTE2b LTR MaLR -281 98 13 9 806 2217 264 84 7 chr12 29060298 29060878 -92196652 + Lx8 LINE L1 6585 7209 -264 9 806 813 62 16 0 chr12 29062007 29062136 -92195394 - L1_Mus3 LINE L1 0 6638 6508 9 806 234 0 0 0 chr12 29063378 29063404 -92194126 + (T)n Simple_repeat Simple_repeat 1 26 0 9 806 406 269 8 78 chr12 29064214 29064343 -92193187 - B1F SINE Alu -16 133 14 9 806 228 250 134 57 chr12 29066101 29066258 -92191272 - MIRb SINE MIR -1 267 99 9 806 190 349 80 35 chr12 29066374 29066487 -92191043 + MIRb SINE MIR 39 156 -112 9 806 1662 170 11 84 chr12 29066495 29066862 -92190668 - ORR1B1 LTR MaLR -14 380 41 9 806 2360 148 2 25 chr12 29066874 29067092 -92190438 - ORR1B1 LTR MaLR 0 394 182 9 806 4329 172 42 28 chr12 29067092 29067987 -92189543 + RMER13B LTR ERVK 1 908 0 1 806 2360 148 2 25 chr12 29067987 29068171 -92189359 - ORR1B1 LTR MaLR -213 181 1 9 806 204 158 0 0 chr12 29068203 29068241 -92189289 + (TGG)n Simple_repeat Simple_repeat 3 40 0 1 806 828 258 119 30 chr12 29068300 29068635 -92188895 + MTEa LTR MaLR 1 365 -14 1 806 885 293 90 3 chr12 29069002 29069337 -92188193 + MLT1A0 LTR MaLR 2 365 0 1 806 378 107 0 0 chr12 29070429 29070485 -92187045 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 1 806 7767 76 2 0 chr12 29071671 29073192 -92184338 - L1_Mus1 LINE L1 0 6567 5044 1 806 24 0 0 0 chr12 29073928 29073952 -92183578 + AT_rich Low_complexity Low_complexity 1 24 0 1 806 591 117 0 0 chr12 29073956 29074050 -92183480 + (CA)n Simple_repeat Simple_repeat 2 95 0 1 806 1477 208 41 3 chr12 29074858 29075148 -92182382 - Lx9 LINE L1 -746 6898 6598 1 806 1830 180 18 12 chr12 29075144 29075482 -92182048 - Lx9 LINE L1 -388 7256 6917 1 806 291 182 170 10 chr12 29075483 29075546 -92181984 + Lx9 LINE L1 7527 7604 -40 1 806 1254 33 0 0 chr12 29075546 29075697 -92181833 + (GGGAA)n Simple_repeat Simple_repeat 4 154 0 1 806 291 182 170 10 chr12 29075697 29075733 -92181797 + Lx9 LINE L1 7605 7641 -3 1 806 1153 273 89 9 chr12 29076019 29076366 -92181164 - MTEa LTR MaLR -3 376 2 1 806 876 261 42 68 chr12 29078887 29079150 -92178380 - B4 SINE B4 -11 281 26 1 806 228 67 0 0 chr12 29079263 29079293 -92178237 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 806 43 20 0 0 chr12 29079332 29079382 -92178148 + AT_rich Low_complexity Low_complexity 1 50 0 1 806 666 209 0 8 chr12 29079414 29079544 -92177986 - B1F SINE Alu -9 140 12 1 806 254 305 0 0 chr12 29079784 29079843 -92177687 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 806 2397 137 23 0 chr12 29081563 29081957 -92175573 + MTC LTR MaLR 11 413 -8 1 806 249 329 0 0 chr12 29083350 29083423 -92174107 + (TATG)n Simple_repeat Simple_repeat 1 73 0 1 806 351 0 0 0 chr12 29084759 29084798 -92172732 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 806 232 197 29 43 chr12 29085355 29085424 -92172106 - ORR1B1 LTR MaLR -299 95 28 1 806 333 316 43 17 chr12 29087656 29087772 -92169758 + PB1D7 SINE Alu 1 119 -1 1 806 5264 54 6 0 chr12 29088179 29088831 -92168699 + L1Md_F2 LINE L1 5927 6582 0 1 806 1036 235 17 8 chr12 29089372 29089608 -92167922 + RMER1C Other Other 29 266 -1076 1 806 2010 204 131 30 chr12 29089608 29090165 -92167365 + RMER20B LTR ERVK 1 613 -14 1 806 254 286 0 14 chr12 29090163 29090234 -92167296 + RMER20B LTR ERVK 535 604 -23 1 806 283 322 0 0 chr12 29090405 29090492 -92167038 + RMER1C Other Other 34 120 -1222 1 806 469 252 54 0 chr12 29090552 29090663 -92166867 + RMER1C Other Other 423 539 -803 1 806 2614 239 20 115 chr12 29090663 29091395 -92166135 + RMER1C Other Other 373 1035 -307 1 806 358 224 48 58 chr12 29091528 29091632 -92165898 + PB1D10 SINE Alu 15 117 0 1 806 28 0 0 0 chr12 29092137 29092165 -92165365 + AT_rich Low_complexity Low_complexity 1 28 0 1 806 275 146 18 0 chr12 29093520 29093575 -92163955 + CT-rich Low_complexity Low_complexity 3 58 0 1 806 498 75 0 0 chr12 29093693 29093760 -92163770 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 1 806 519 315 71 34 chr12 29094638 29094824 -92162706 + L1MEc LINE L1 1778 1960 -4440 1 806 1183 268 34 54 chr12 29094824 29095211 -92162319 - MTE2b LTR MaLR 0 379 1 1 806 519 315 71 34 chr12 29095211 29095616 -92161914 + L1MEc LINE L1 1961 2391 -4009 1 806 1316 215 70 68 chr12 29095629 29095998 -92161532 + ORR1D2 LTR MaLR 1 370 0 1 806 5166 232 35 58 chr12 29095998 29097401 -92160129 + ORR1D2-int LTR MaLR 1 1370 0 1 806 1679 199 42 25 chr12 29097401 29097757 -92159773 + ORR1D2 LTR MaLR 1 362 -8 1 806 627 26 0 0 chr12 29097777 29097854 -92159676 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 100 922 209 48 14 chr12 29097873 29098082 -92159448 - B3 SINE B2 0 216 1 1 807 709 316 72 58 chr12 29098187 29098355 -92159175 - L1MA9 LINE L1 -292 6005 5820 1 807 248 0 0 30 chr12 29098355 29098388 -92159142 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 807 709 312 70 73 chr12 29098388 29098817 -92158713 - L1MA9 LINE L1 -493 5819 5407 1 807 450 0 0 0 chr12 29099470 29099520 -92158010 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 807 661 231 117 11 chr12 29099522 29099710 -92157820 - B4A SINE B4 -80 212 5 1 807 808 216 43 39 chr12 29101229 29101460 -92156070 + L1_Mur3 LINE L1 1585 1816 -4064 1 807 1241 173 5 9 chr12 29101450 29101666 -92155864 - Lx7 LINE L1 -385 7311 7097 1 807 1338 114 5 5 chr12 29102890 29103101 -92154429 - L1Md_F2 LINE L1 0 6582 6372 1 807 336 333 113 82 chr12 29103886 29104005 -92153525 + MER89 LTR ERV1 21 141 -418 1 807 4974 65 2 0 chr12 29104005 29104621 -92152909 + L1_Mus2 LINE L1 5950 6566 0 1 807 336 333 113 82 chr12 29104621 29105024 -92152506 + MER89 LTR ERV1 142 559 0 1 807 700 125 81 24 chr12 29105709 29105819 -92151711 + B1_Mus2 SINE Alu 18 135 -12 1 807 780 111 0 0 chr12 29105819 29105936 -92151594 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 1 807 700 125 81 24 chr12 29105936 29105948 -92151582 + B1_Mus2 SINE Alu 136 147 0 1 807 402 115 0 0 chr12 29107019 29107080 -92150450 + (ATG)n Simple_repeat Simple_repeat 1 61 0 1 807 2734 156 83 4 chr12 29107558 29108028 -92149502 + RMER1B Other Other 560 1066 0 1 807 203 167 0 0 chr12 29108028 29108064 -92149466 + GA-rich Low_complexity Low_complexity 1 36 0 1 807 260 253 0 13 chr12 29108109 29108185 -92149345 + RMER1C Other Other 1268 1342 0 1 807 817 249 50 23 chr12 29109406 29109624 -92147906 + B4 SINE B4 3 226 -66 1 807 5124 43 0 3 chr12 29109624 29110251 -92147279 + L1_Mm LINE L1 3425 4049 -1834 1 807 274 250 0 19 chr12 29111722 29111828 -92145702 + CT-rich Low_complexity Low_complexity 3 106 0 1 807 289 268 24 0 chr12 29113557 29113639 -92143891 + B4A SINE B4 3 86 -206 1 807 257 228 0 17 chr12 29113656 29113714 -92143816 - RMER20B LTR ERVK -36 591 535 1 807 1037 188 239 18 chr12 29113712 29114214 -92143316 - RMER20B LTR ERVK -14 613 1 1 807 570 330 10 15 chr12 29114214 29114411 -92143119 + B4 SINE B4 91 286 -6 1 807 326 297 0 18 chr12 29114708 29114821 -92142709 + MIRb SINE MIR 109 219 -49 1 807 2584 260 70 67 chr12 29115158 29116132 -92141398 + Lx8 LINE L1 6495 7471 -2 1 807 410 287 110 14 chr12 29116166 29116385 -92141145 + B4A SINE B4 8 247 -45 1 807 894 45 0 0 chr12 29116391 29116502 -92141028 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 1 807 630 0 0 0 chr12 29116506 29116576 -92140954 + (GGGA)n Simple_repeat Simple_repeat 3 72 0 1 807 227 204 20 0 chr12 29116635 29116684 -92140846 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 807 183 162 0 0 chr12 29117275 29117312 -92140218 + A-rich Low_complexity Low_complexity 1 37 0 1 807 513 0 0 0 chr12 29117688 29117745 -92139785 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 807 1672 89 107 52 chr12 29118385 29118569 -92138961 + Lx LINE L1 6324 6518 -136 1 807 186 43 0 0 chr12 29118569 29118592 -92138938 + (TGGG)n Simple_repeat Simple_repeat 2 24 0 1 807 1672 89 107 52 chr12 29118592 29118715 -92138815 + Lx LINE L1 6519 6648 -6 1 807 720 303 166 34 chr12 29118755 29118977 -92138553 + RCHARR1 DNA MER1_type 2 288 -686 1 807 376 187 198 0 chr12 29118977 29119068 -92138462 - PB1D9 SINE Alu -11 109 1 1 807 720 303 166 34 chr12 29119068 29119291 -92138239 + RCHARR1 DNA MER1_type 289 506 -468 1 807 2057 194 80 51 chr12 29119291 29119817 -92137713 - RLTR20A LTR ERVK 0 541 1 1 807 1270 261 77 18 chr12 29119818 29120262 -92137268 + RCHARR1 DNA MER1_type 502 971 -3 1 807 329 245 113 74 chr12 29120749 29121022 -92136508 + L1MA5 LINE L1 5670 5935 -365 1 807 347 171 13 0 chr12 29121185 29121261 -92136269 + GA-rich Low_complexity Low_complexity 2 78 0 1 807 266 227 13 0 chr12 29121332 29121407 -92136123 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 807 4519 16 0 0 chr12 29122824 29123317 -92134213 - MT2_Mm LTR ERVL 0 493 1 1 807 640 294 12 0 chr12 29125323 29125493 -92132037 + MTE2b LTR MaLR 10 181 -198 1 807 420 20 0 0 chr12 29125640 29125689 -92131841 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 807 722 150 0 0 chr12 29125741 29125861 -92131669 + MTC LTR MaLR 1 120 -301 1 807 323 183 12 0 chr12 29125863 29125945 -92131585 + CT-rich Low_complexity Low_complexity 3 85 0 1 807 1172 71 0 0 chr12 29125952 29126093 -92131437 - B1_Mus2 SINE Alu -5 142 2 1 807 1513 168 83 33 chr12 29126094 29126396 -92131134 + MTC LTR MaLR 105 421 0 1 807 27 0 0 0 chr12 29126649 29126676 -92130854 + AT_rich Low_complexity Low_complexity 1 27 0 1 807 5359 137 70 3 chr12 29127957 29128854 -92128676 - RMER17B LTR ERVK 0 958 2 1 807 1086 174 109 8 chr12 29128857 29129095 -92128435 + MTD LTR MaLR 26 287 -132 1 807 2312 115 16 0 chr12 29129095 29129416 -92128114 - ORR1A3 LTR MaLR 0 326 1 1 807 9604 132 62 17 chr12 29129416 29130945 -92126585 - ORR1A3-int LTR MaLR 0 1963 351 1 807 252 0 0 0 chr12 29130945 29130973 -92126557 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 807 9604 132 62 17 chr12 29130973 29131226 -92126304 - ORR1A3-int LTR MaLR -1613 350 101 1 807 768 28 9 0 chr12 29131806 29131913 -92125617 - ORR1A3-int LTR MaLR -1855 108 1 1 807 658 52 83 0 chr12 29131917 29132013 -92125517 - ORR1A3 LTR MaLR -8 318 215 1 807 393 22 0 0 chr12 29132013 29132059 -92125471 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 807 592 257 21 0 chr12 29133457 29133601 -92123929 + B3A SINE B2 3 149 -49 1 807 236 256 152 13 chr12 29138024 29138182 -92119348 - MER33 DNA MER1_type -9 315 136 1 807 592 204 50 5 chr12 29140822 29140933 -92116597 + Lx8 LINE L1 6558 6672 -801 1 807 255 234 62 0 chr12 29141587 29141651 -92115879 + RMER30 DNA MER1_type 1 68 -134 1 807 33 43 0 0 chr12 29141653 29141700 -92115830 + AT_rich Low_complexity Low_complexity 1 47 0 1 807 329 38 0 0 chr12 29141702 29141755 -92115775 - L1_Mus4 LINE L1 -2 6634 6582 1 807 483 124 11 0 chr12 29141763 29141852 -92115678 - Lx LINE L1 -7 6647 6558 1 807 515 193 36 18 chr12 29141855 29141966 -92115564 + RMER30 DNA MER1_type 89 201 -1 1 807 476 230 193 35 chr12 29142095 29142266 -92115264 + B3A SINE B2 1 198 0 1 807 180 0 0 0 chr12 29142326 29142346 -92115184 + (TTTTC)n Simple_repeat Simple_repeat 1 20 0 1 807 675 250 22 22 chr12 29144063 29144243 -92113287 + B3A SINE B2 1 180 -18 1 807 22 0 0 0 chr12 29144267 29144289 -92113241 + AT_rich Low_complexity Low_complexity 1 22 0 1 807 2206 150 44 46 chr12 29145032 29145445 -92112085 - MTC LTR MaLR 0 421 10 1 807 826 157 7 45 chr12 29146642 29146796 -92110734 + B1_Mur3 SINE Alu 2 149 0 1 807 626 240 20 7 chr12 29147318 29147465 -92110065 + B1_Mur1 SINE Alu 1 149 0 2 807 760 325 52 42 chr12 29148821 29149052 -92108478 + MT2A LTR ERVL 1 224 -309 2 807 317 82 20 0 chr12 29149052 29149101 -92108429 + (CTG)n Simple_repeat Simple_repeat 2 51 0 2 807 760 325 52 42 chr12 29149101 29149393 -92108137 + MT2A LTR ERVL 225 529 -4 2 807 291 234 147 47 chr12 29149565 29149776 -92107754 + MER33 DNA MER1_type 26 257 -67 2 807 2556 88 67 5 chr12 29149972 29150359 -92107171 + IAPLTR2a LTR ERVK 1 411 0 2 807 226 241 37 0 chr12 29150465 29150519 -92107011 + ORR1E LTR MaLR 256 311 -48 2 807 293 93 19 0 chr12 29150945 29150999 -92106531 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 2 807 571 186 16 16 chr12 29151008 29151451 -92106079 + (TG)n Simple_repeat Simple_repeat 1 443 0 2 807 550 170 23 6 chr12 29151516 29151688 -92105842 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 807 510 126 53 18 chr12 29151732 29151902 -92105628 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 807 2349 49 0 0 chr12 29151911 29152196 -92105334 + L1_Mus1 LINE L1 6283 6567 0 2 807 642 211 8 0 chr12 29153717 29153840 -92103690 + RSINE1 SINE B4 12 135 -30 2 807 856 35 8 17 chr12 29153910 29154027 -92103503 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 2 807 885 151 0 0 chr12 29154004 29154156 -92103374 + GA-rich Low_complexity Low_complexity 3 154 0 2 807 213 241 19 0 chr12 29154481 29154535 -92102995 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 2 807 510 17 0 0 chr12 29157796 29157855 -92099675 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2 807 661 54 0 0 chr12 29157872 29157964 -92099566 + L1Md_A LINE L1 6491 6582 0 2 807 1275 86 68 11 chr12 29159240 29159416 -92098114 + B2_Mm2 SINE B2 1 186 -9 2 807 3376 36 5 0 chr12 29160306 29160696 -92096834 - MTA_Mm LTR MaLR -4 392 1 2 807 744 286 38 0 chr12 29160747 29160960 -92096570 + ID_B1 SINE B4 4 224 0 2 807 795 268 29 29 chr12 29162553 29162725 -92094805 + B4A SINE B4 36 207 -85 2 807 617 285 19 12 chr12 29162725 29162885 -92094645 + RSINE1 SINE B4 3 163 -2 2 807 795 268 29 29 chr12 29162885 29162954 -92094576 + B4A SINE B4 208 277 -15 2 807 572 290 147 40 chr12 29163029 29163424 -92094106 + MLT1D LTR MaLR 12 448 -57 2 807 1067 219 0 14 chr12 29164407 29164615 -92092915 - B3 SINE B2 -10 206 2 2 807 1079 70 0 14 chr12 29164647 29164792 -92092738 + B1_Mm SINE Alu 5 147 0 2 807 1292 19 7 0 chr12 29165100 29165255 -92092275 + (GGAA)n Simple_repeat Simple_repeat 2 157 0 2 807 614 136 53 6 chr12 29168657 29168827 -92088703 + CT-rich Low_complexity Low_complexity 1 178 0 2 807 380 302 28 0 chr12 29169654 29169760 -92087770 + PB1D10 SINE Alu 7 115 -2 2 807 10582 71 25 4 chr12 29171324 29173094 -92084436 + Lx3_Mus LINE L1 5205 7008 -1 2 807 257 371 79 0 chr12 29173623 29173801 -92083729 + MER58A DNA MER1_type 10 201 -23 2 807 6868 59 0 10 chr12 29174472 29176112 -92081418 + L1Md_Gf LINE L1 275 1994 -3892 2 807 7880 23 1 11 chr12 29176114 29177047 -92080483 + L1Md_A LINE L1 208 1131 -5593 2 807 8140 17 0 0 chr12 29177043 29177955 -92079575 + L1Md_A LINE L1 4676 5616 -558 2 807 8516 35 0 0 chr12 29177955 29178950 -92078580 + L1Md_T LINE L1 5588 6582 0 2 807 1320 244 9 47 chr12 29178950 29179015 -92078515 + L1Md_A LINE L1 5617 5666 -508 2 807 243 0 0 0 chr12 29179186 29179213 -92078317 + (A)n Simple_repeat Simple_repeat 1 27 0 2 807 620 304 61 118 chr12 29179226 29180112 -92077418 + L1M4 LINE L1 2723 3557 -2589 2 807 285 248 49 16 chr12 29180232 29180418 -92077112 + L1M4 LINE L1 4287 4480 -1666 2 807 704 172 8 0 chr12 29180428 29180550 -92076980 + B1_Mur4 SINE Alu 2 124 -26 2 807 904 197 45 6 chr12 29182189 29182368 -92075162 + Lx4A LINE L1 6871 7056 -2 2 807 203 114 23 0 chr12 29182368 29182412 -92075118 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 2 807 733 333 79 6 chr12 29183772 29184101 -92073429 + MLT1A0 LTR MaLR 3 355 -10 2 807 842 133 303 0 chr12 29184234 29184399 -92073131 + B3 SINE B2 1 215 -1 2 807 1476 273 151 36 chr12 29185518 29186452 -92071078 + Charlie1a DNA MER1_type 295 1335 -120 2 807 200 214 0 0 chr12 29186467 29186509 -92071021 + (GTATG)n Simple_repeat Simple_repeat 3 44 0 2 807 351 253 0 0 chr12 29186517 29186596 -92070934 - ID4_ SINE ID 0 83 5 2 807 332 195 85 0 chr12 29186666 29186748 -92070782 + Charlie1a DNA MER1_type 1323 1411 -44 2 807 384 355 71 33 chr12 29186806 29187016 -92070514 + B4 SINE B4 1 218 -74 2 807 639 0 0 0 chr12 29187333 29187404 -92070126 + (GTTTG)n Simple_repeat Simple_repeat 3 73 0 2 807 285 203 0 0 chr12 29187767 29187826 -92069704 - ID_B1 SINE B4 -17 207 149 2 807 189 0 0 0 chr12 29188457 29188478 -92069052 + (A)n Simple_repeat Simple_repeat 1 21 0 2 807 3067 72 2 12 chr12 29188838 29189249 -92068281 + L1Md_F2 LINE L1 6163 6569 -13 2 807 21 36 0 0 chr12 29191115 29191143 -92066387 + AT_rich Low_complexity Low_complexity 1 28 0 2 807 738 38 9 19 chr12 29191198 29191306 -92066224 + (TG)n Simple_repeat Simple_repeat 2 108 0 2 807 520 185 91 15 chr12 29191337 29191469 -92066061 - B3A SINE B2 -56 142 1 2 807 333 225 129 2 chr12 29193510 29193614 -92063916 - B1F1 SINE Alu 0 117 2 2 807 1181 78 0 6 chr12 29193670 29193837 -92063693 + (GAAA)n Simple_repeat Simple_repeat 4 169 0 2 807 576 132 35 0 chr12 29193848 29193962 -92063568 + GA-rich Low_complexity Low_complexity 1 118 0 2 807 581 190 17 25 chr12 29194255 29194374 -92063156 - B1_Mur2 SINE Alu 0 149 32 2 807 949 110 7 29 chr12 29194432 29194572 -92062958 + B1_Mur4 SINE Alu 1 137 -13 2 807 22 0 0 0 chr12 29195873 29195895 -92061635 + AT_rich Low_complexity Low_complexity 1 22 0 2 807 368 284 47 0 chr12 29196135 29196262 -92061268 + ORR1E LTR MaLR 4 136 -223 2 807 836 273 5 19 chr12 29196739 29196952 -92060578 + B3A SINE B2 1 186 -9 2 807 23 0 0 0 chr12 29197981 29198004 -92059526 + AT_rich Low_complexity Low_complexity 1 23 0 2 807 569 307 7 0 chr12 29198340 29198490 -92059040 + RSINE1 SINE B4 1 151 -14 2 807 25 0 0 0 chr12 29198796 29198821 -92058709 + AT_rich Low_complexity Low_complexity 1 25 0 2 807 23 33 0 0 chr12 29199205 29199235 -92058295 + AT_rich Low_complexity Low_complexity 1 30 0 2 807 464 299 35 0 chr12 29201820 29201964 -92055566 + B1F SINE Alu 1 149 0 2 807 1299 89 0 0 chr12 29201964 29202212 -92055318 + (GAAA)n Simple_repeat Simple_repeat 1 248 0 2 807 282 256 39 0 chr12 29202379 29202457 -92055073 + RSINE1 SINE B4 83 163 -2 2 807 286 253 127 0 chr12 29205186 29205265 -92052265 + MLT1A1 LTR MaLR 288 376 -32 2 807 2310 162 65 12 chr12 29205546 29205946 -92051584 + MTC LTR MaLR 1 421 0 2 807 1183 285 9 9 chr12 29206140 29206467 -92051063 + MTC-int LTR MaLR 9 335 -1245 2 807 741 172 0 0 chr12 29206467 29206583 -92050947 + B1_Mus1 SINE Alu 1 116 -32 2 807 483 69 0 0 chr12 29206583 29206655 -92050875 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 807 464 211 115 0 chr12 29206655 29206759 -92050771 + MTC-int LTR MaLR 311 426 -1154 2 807 812 191 7 13 chr12 29207515 29207664 -92049866 + B1_Mur2 SINE Alu 2 149 0 2 807 366 23 0 0 chr12 29208282 29208325 -92049205 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 807 200 200 0 0 chr12 29208970 29209005 -92048525 + CT-rich Low_complexity Low_complexity 5 39 0 2 807 198 187 32 32 chr12 29210624 29210718 -92046812 + (CATA)n Simple_repeat Simple_repeat 1 94 0 2 807 1286 108 11 0 chr12 29210721 29210897 -92046633 + B2_Mm1t SINE B2 2 179 -14 2 807 317 124 12 96 chr12 29210962 29211033 -92046497 + B2_Mm2 SINE B2 46 116 -82 2 807 351 0 0 0 chr12 29211046 29211085 -92046445 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 807 200 114 0 28 chr12 29211094 29211130 -92046400 + (CATA)n Simple_repeat Simple_repeat 4 38 0 2 807 243 154 33 71 chr12 29211139 29211321 -92046209 + (CATATA)n Simple_repeat Simple_repeat 4 178 0 2 807 347 247 25 45 chr12 29211352 29211509 -92046021 + (CA)n Simple_repeat Simple_repeat 1 154 0 2 807 2458 185 16 155 chr12 29212635 29213345 -92044185 + RMER19C LTR ERVK 1 611 0 2 807 251 287 45 22 chr12 29213876 29213965 -92043565 - MIR SINE MIR -78 130 40 2 807 447 19 0 0 chr12 29214064 29214116 -92043414 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 807 613 76 42 0 chr12 29214296 29214414 -92043116 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 2 807 969 58 0 0 chr12 29214554 29214691 -92042839 + (TG)n Simple_repeat Simple_repeat 1 137 0 2 807 222 292 61 13 chr12 29214788 29214880 -92042650 + MIR SINE MIR 36 136 -132 2 807 495 284 0 0 chr12 29214906 29215022 -92042508 + RSINE1 SINE B4 33 148 -17 2 807 271 22 0 80 chr12 29215051 29215101 -92042429 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 2 807 480 111 0 0 chr12 29215104 29215176 -92042354 + (TGGA)n Simple_repeat Simple_repeat 2 73 0 2 807 251 275 96 37 chr12 29215950 29216086 -92041444 + ORR1E LTR MaLR 50 193 -166 2 807 3210 53 5 5 chr12 29218057 29218453 -92039077 - MTA_Mm LTR MaLR 0 396 1 2 807 879 275 39 35 chr12 29218473 29218756 -92038774 + B4 SINE B4 1 284 -8 2 807 633 128 0 0 chr12 29218756 29218858 -92038672 + (GA)n Simple_repeat Simple_repeat 1 102 0 2 807 464 301 53 43 chr12 29219206 29219529 -92038001 + L1_Mur3 LINE L1 702 1027 -6685 2 807 186 209 0 0 chr12 29219971 29220014 -92037516 + (TTG)n Simple_repeat Simple_repeat 3 45 0 2 807 530 238 19 52 chr12 29220028 29220183 -92037347 - RSINE1 SINE B4 -13 152 3 2 807 799 284 14 5 chr12 29220664 29220873 -92036657 - ID_B1 SINE B4 -10 214 4 2 807 378 274 10 0 chr12 29221282 29221295 -92036235 + ID_B1 SINE B4 70 172 -52 2 807 453 225 0 0 chr12 29221295 29221384 -92036146 + PB1D10 SINE Alu 3 91 -26 2 807 426 20 0 0 chr12 29221394 29221445 -92036085 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 807 204 40 0 0 chr12 29221545 29221570 -92035960 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2 807 1359 67 0 0 chr12 29221571 29221750 -92035780 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 3 807 927 73 0 0 chr12 29221750 29221874 -92035656 + (TAGA)n Simple_repeat Simple_repeat 1 124 0 3 807 304 335 42 87 chr12 29222346 29222504 -92035026 + B4A SINE B4 7 154 -70 3 807 1052 239 79 36 chr12 29222633 29222706 -92034824 + B4 SINE B4 3 76 -216 3 807 426 121 0 0 chr12 29222706 29222772 -92034758 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 807 531 0 0 0 chr12 29222772 29222830 -92034700 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 807 1052 239 79 36 chr12 29222830 29223033 -92034497 + B4 SINE B4 77 291 -1 3 807 2104 141 19 3 chr12 29223794 29224115 -92033415 - ORR1A3 LTR MaLR 0 326 1 3 807 522 0 0 0 chr12 29225201 29225259 -92032271 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 807 670 298 0 13 chr12 29225309 29225462 -92032068 - RSINE1 SINE B4 0 165 15 3 807 625 283 19 19 chr12 29225504 29225666 -92031864 - RSINE1 SINE B4 -2 163 2 3 807 1437 85 0 5 chr12 29225678 29225867 -92031663 - B2_Mm2 SINE B2 -7 188 1 3 807 271 323 94 5 chr12 29228356 29228494 -92029036 + MIRb SINE MIR 105 251 -11 3 807 558 0 0 0 chr12 29228809 29228871 -92028659 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 100 495 308 12 65 chr12 29228894 29229064 -92028466 - B4 SINE B4 -1 291 131 3 808 929 265 139 0 chr12 29229065 29229352 -92028178 + Lx8 LINE L1 6991 7317 -156 3 808 3661 187 144 28 chr12 29229402 29230278 -92027252 - RMER1A Other Other -1 1029 52 3 808 300 276 112 82 chr12 29230279 29230413 -92027117 - B1_Mm SINE Alu -5 145 8 3 808 359 261 207 21 chr12 29230320 29230465 -92027065 - ID_B1 SINE B4 -43 181 10 3 808 382 187 40 0 chr12 29230504 29230579 -92026951 + B3 SINE B2 139 216 0 3 808 530 273 150 63 chr12 29230969 29231223 -92026307 + B4 SINE B4 1 276 -16 3 808 246 174 0 0 chr12 29231474 29231520 -92026010 + CT-rich Low_complexity Low_complexity 3 48 0 3 808 351 0 0 0 chr12 29231525 29231564 -92025966 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 808 313 254 264 7 chr12 29231887 29232029 -92025501 + L1M5 LINE L1 3116 3284 -2862 3 808 1115 197 5 32 chr12 29232381 29232601 -92024929 + B3 SINE B2 3 216 0 3 808 219 146 0 0 chr12 29232671 29232712 -92024818 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 3 808 300 323 20 20 chr12 29232715 29232816 -92024714 - PB1D10 SINE Alu 0 117 17 3 808 2187 181 47 15 chr12 29233019 29233424 -92024106 - MTC LTR MaLR 0 421 4 3 808 2449 169 73 71 chr12 29233424 29234279 -92023251 - MTC-int LTR MaLR -2 1256 12 3 808 812 209 129 36 chr12 29234792 29234986 -92022544 - B3 SINE B2 0 216 5 3 808 884 182 0 14 chr12 29235024 29235169 -92022361 + B1_Mur3 SINE Alu 1 143 -6 3 808 234 169 41 27 chr12 29235174 29235247 -92022283 + (TTTAA)n Simple_repeat Simple_repeat 1 74 0 3 808 2209 109 51 0 chr12 29235410 29235723 -92021807 + ORR1A4 LTR MaLR 1 329 0 3 808 298 306 72 57 chr12 29237538 29237625 -92019905 + B4 SINE B4 2 91 -201 3 808 629 208 16 0 chr12 29237625 29237750 -92019780 + B1F2 SINE Alu 1 127 -22 3 808 234 91 0 0 chr12 29237805 29237838 -92019692 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 808 968 130 6 0 chr12 29237838 29237999 -92019531 + (GA)n Simple_repeat Simple_repeat 1 162 0 3 808 366 193 33 43 chr12 29239486 29239578 -92017952 + PB1D10 SINE Alu 27 117 0 3 808 210 352 0 30 chr12 29239808 29239975 -92017555 + G-rich Low_complexity Low_complexity 6 167 0 3 808 431 241 0 0 chr12 29240346 29240425 -92017105 + ID4 SINE ID 2 80 -3 3 808 635 263 80 0 chr12 29240734 29240909 -92016621 + B3A SINE B2 7 195 -3 3 808 919 101 119 20 chr12 29240908 29241059 -92016471 - B2_Mm2 SINE B2 -28 167 2 3 808 357 48 0 45 chr12 29241104 29241170 -92016360 - L1Md_F2 LINE L1 0 6582 6520 3 808 345 24 0 0 chr12 29241762 29241804 -92015726 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 808 349 266 5 69 chr12 29242414 29242519 -92015011 + ID_B1 SINE B4 79 179 -113 3 808 206 237 0 13 chr12 29242524 29242601 -92014929 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 808 297 0 0 0 chr12 29242956 29242989 -92014541 + (GTTTG)n Simple_repeat Simple_repeat 4 36 0 3 808 364 264 103 0 chr12 29243157 29243244 -92014286 + RSINE1 SINE B4 2 97 -68 3 808 207 0 0 0 chr12 29243465 29243488 -92014042 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 808 306 167 0 0 chr12 29243504 29243558 -92013972 - ID_B1 SINE B4 -3 221 168 3 808 264 253 75 12 chr12 29243509 29243589 -92013941 - PB1D7 SINE Alu -8 112 28 3 808 789 245 136 101 chr12 29243573 29243918 -92013612 - MTE2a LTR MaLR -14 365 9 3 808 294 237 0 33 chr12 29243926 29243987 -92013543 - ID_B1 SINE B4 -56 168 110 3 808 799 197 0 26 chr12 29244411 29244562 -92012968 - B1_Mus1 SINE Alu 0 148 2 3 808 587 291 118 64 chr12 29245080 29245186 -92012344 + L1_Mur3 LINE L1 4815 4917 -963 3 808 678 234 7 33 chr12 29245186 29245336 -92012194 + B1_Mur4 SINE Alu 5 150 0 3 808 587 291 118 64 chr12 29245336 29245841 -92011689 + L1_Mur3 LINE L1 4918 5459 -421 3 808 362 303 16 0 chr12 29245815 29245986 -92011544 + L1MB8 LINE L1 5312 5459 -715 3 808 994 183 103 0 chr12 29246133 29246308 -92011222 + B3 SINE B2 1 193 -23 3 808 576 0 0 0 chr12 29246309 29246373 -92011157 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 808 489 264 90 0 chr12 29246392 29246593 -92010937 + L1MB8 LINE L1 5684 5902 -276 3 808 231 179 35 18 chr12 29246805 29246862 -92010668 + L1MB8 LINE L1 6112 6169 -9 3 808 933 195 10 62 chr12 29246886 29247094 -92010436 + B3A SINE B2 2 198 0 3 808 3663 148 119 10 chr12 29247160 29247850 -92009680 + RMER1A Other Other 265 1029 -1 3 808 724 203 22 0 chr12 29247934 29248072 -92009458 - B1_Mus1 SINE Alu -7 141 1 3 808 252 254 169 0 chr12 29248715 29248833 -92008697 - Charlie10 DNA MER1_type -52 2770 2633 3 808 1868 89 13 66 chr12 29250957 29251258 -92006272 + ORR1A2 LTR MaLR 1 285 -42 3 808 751 114 196 26 chr12 29251258 29251411 -92006119 + B2_Mm1a SINE B2 1 179 -14 3 808 327 96 457 0 chr12 29251438 29251532 -92005998 + B2_Mm2 SINE B2 58 194 -1 3 808 1252 61 0 0 chr12 29251564 29251711 -92005819 + B1_Mus1 SINE Alu 2 148 0 3 808 189 0 0 0 chr12 29251711 29251732 -92005798 + (A)n Simple_repeat Simple_repeat 1 21 0 3 808 309 149 0 0 chr12 29251732 29251779 -92005751 + ORR1A2 LTR MaLR 272 318 -8 3 808 651 242 28 68 chr12 29251829 29252006 -92005524 - ID_B1 SINE B4 -18 206 37 3 808 1285 228 70 33 chr12 29252006 29252194 -92005336 + ORR1D2 LTR MaLR 1 195 -175 3 808 2807 96 5 47 chr12 29252194 29252621 -92004909 + RLTR9E LTR ERVK 1 409 0 3 808 1285 228 70 33 chr12 29252621 29252763 -92004767 + ORR1D2 LTR MaLR 196 343 -27 3 808 198 0 0 0 chr12 29252834 29252856 -92004674 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 808 270 0 0 0 chr12 29254017 29254047 -92003483 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 808 1248 82 0 0 chr12 29254055 29254213 -92003317 + B2_Mm2 SINE B2 1 158 -37 3 808 423 0 0 0 chr12 29254214 29254261 -92003269 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3 808 260 146 22 0 chr12 29254299 29254354 -92003176 + B2_Mm2 SINE B2 63 121 -95 3 808 22 56 0 0 chr12 29254360 29254396 -92003134 + AT_rich Low_complexity Low_complexity 1 36 0 3 808 667 260 162 10 chr12 29254519 29254717 -92002813 - B4A SINE B4 -60 232 5 3 808 1505 59 16 0 chr12 29254738 29254924 -92002606 - B2_Mm2 SINE B2 -6 189 1 3 808 25 0 0 0 chr12 29254929 29254954 -92002576 + AT_rich Low_complexity Low_complexity 1 25 0 3 808 192 40 0 0 chr12 29254955 29254980 -92002550 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 808 436 239 26 43 chr12 29254992 29255124 -92002406 - RSINE1 SINE B4 -19 146 19 3 808 809 230 15 110 chr12 29256035 29256308 -92001222 + B4A SINE B4 45 291 -1 3 808 239 226 25 19 chr12 29256364 29256526 -92001004 + (CATA)n Simple_repeat Simple_repeat 1 163 0 3 808 341 323 0 20 chr12 29256563 29256605 -92000925 + polypurine Low_complexity Low_complexity 4 44 0 3 808 1298 61 0 16 chr12 29256605 29256787 -92000743 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 3 808 341 323 0 20 chr12 29256787 29256845 -92000685 + polypurine Low_complexity Low_complexity 45 102 0 3 808 635 282 60 42 chr12 29257041 29257256 -92000274 + MTEa LTR MaLR 159 377 -2 3 808 475 193 11 0 chr12 29257272 29257360 -92000170 + MTEa-int LTR MaLR 15 103 -1477 3 808 231 386 23 109 chr12 29257448 29257483 -92000047 + B3 SINE B2 1 91 -125 3 808 436 302 41 48 chr12 29257483 29257629 -91999901 + B4A SINE B4 148 292 0 3 808 231 386 23 109 chr12 29257629 29257669 -91999861 + B3 SINE B2 92 202 -14 3 808 283 258 13 19 chr12 29257690 29257848 -91999682 + (CA)n Simple_repeat Simple_repeat 2 158 0 3 808 1793 195 14 57 chr12 29258361 29258623 -91998907 - ORR1C1 LTR MaLR 0 378 123 3 808 261 0 0 0 chr12 29258623 29258652 -91998878 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 808 1793 195 14 57 chr12 29258652 29258759 -91998771 - ORR1C1 LTR MaLR -256 122 25 3 808 214 234 0 0 chr12 29258761 29258808 -91998722 + G-rich Low_complexity Low_complexity 1 47 0 3 808 627 291 37 25 chr12 29259279 29259508 -91998022 - ORR1E LTR MaLR -144 230 4 3 808 379 280 2 2 chr12 29259666 29259746 -91997784 + B4 SINE B4 2 81 -84 3 808 531 0 0 0 chr12 29259746 29259805 -91997725 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 808 1584 0 0 0 chr12 29259808 29259984 -91997546 + (GGAAA)n Simple_repeat Simple_repeat 3 178 0 3 808 239 353 36 50 chr12 29259984 29260039 -91997491 + RSINE1 SINE B4 82 140 -25 3 808 216 0 0 0 chr12 29260041 29260065 -91997465 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 808 421 290 32 8 chr12 29260848 29260973 -91996557 + B1F SINE Alu 5 132 -17 3 808 334 310 0 0 chr12 29261086 29261173 -91996357 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 808 716 256 126 0 chr12 29261504 29261703 -91995827 + ID_B1 SINE B4 1 224 0 3 808 246 333 10 59 chr12 29261881 29261983 -91995547 - MER3 DNA MER1_type -59 150 54 3 808 630 291 109 11 chr12 29262404 29262588 -91994942 + ID_B1 SINE B4 7 208 -16 4 808 722 222 134 21 chr12 29263685 29263924 -91993606 + Lx8 LINE L1 6591 6856 -617 4 808 844 120 0 31 chr12 29264448 29264577 -91992953 + B1_Mus2 SINE Alu 11 135 -12 4 808 207 0 0 0 chr12 29264693 29264716 -91992814 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 808 546 16 0 0 chr12 29265282 29265345 -91992185 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 808 483 247 0 0 chr12 29265477 29265651 -91991879 + (CA)n Simple_repeat Simple_repeat 2 175 0 4 808 344 273 0 7 chr12 29265686 29265841 -91991689 + (CA)n Simple_repeat Simple_repeat 1 154 0 4 808 341 206 16 0 chr12 29266578 29266641 -91990889 + B1F1 SINE Alu 36 99 -50 4 808 262 281 56 37 chr12 29266676 29266783 -91990747 - ORR1E LTR MaLR -226 133 25 4 808 180 176 0 0 chr12 29266785 29266819 -91990711 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 4 808 207 0 0 0 chr12 29266870 29266893 -91990637 + (TTG)n Simple_repeat Simple_repeat 1 23 0 4 808 767 212 14 7 chr12 29266908 29267046 -91990484 - B1_Mur3 SINE Alu -9 140 2 4 808 1123 96 58 53 chr12 29267749 29267937 -91989593 + B2_Mm2 SINE B2 1 189 -6 4 808 1207 60 132 6 chr12 29267948 29268115 -91989415 + B2_Mm2 SINE B2 3 190 -5 4 808 586 298 216 58 chr12 29268551 29268795 -91988735 - MT2A LTR ERVL 0 554 265 4 808 342 0 0 0 chr12 29268795 29268833 -91988697 + (CAG)n Simple_repeat Simple_repeat 1 38 0 4 808 339 298 216 58 chr12 29268833 29269004 -91988526 - MT2A LTR ERVL -290 264 73 4 808 391 246 38 35 chr12 29268932 29269089 -91988441 - MTE2a LTR MaLR -253 166 13 4 808 243 0 0 0 chr12 29269124 29269151 -91988379 + (A)n Simple_repeat Simple_repeat 1 27 0 4 808 358 89 321 9 chr12 29269490 29269602 -91987928 - B2_Mm2 SINE B2 -2 193 47 4 808 1287 102 11 0 chr12 29269668 29269845 -91987685 - B2_Mm1t SINE B2 -14 179 1 4 808 582 276 35 0 chr12 29269884 29270029 -91987501 - MTEa LTR MaLR -167 212 63 4 808 238 282 78 102 chr12 29270029 29270050 -91987480 - MLT2B3 LTR ERVL -321 233 72 4 808 29 0 0 0 chr12 29270280 29270309 -91987221 + AT_rich Low_complexity Low_complexity 1 29 0 4 808 871 286 73 14 chr12 29271064 29271351 -91986179 - RMER15 LTR ERVL 0 575 272 4 808 690 205 0 16 chr12 29271452 29271576 -91985954 - B3 SINE B2 -19 197 76 4 808 2431 76 34 25 chr12 29271587 29271911 -91985619 + ORR1A2 LTR MaLR 1 327 0 4 808 540 322 150 26 chr12 29272004 29272102 -91985428 + B4 SINE B4 1 104 -188 4 808 826 248 35 15 chr12 29272102 29272299 -91985231 + B3 SINE B2 5 205 -11 4 808 540 322 150 26 chr12 29272299 29272433 -91985097 + B4 SINE B4 105 262 -30 4 808 351 0 0 0 chr12 29272433 29272472 -91985058 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 808 1326 78 0 0 chr12 29272491 29272671 -91984859 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 808 270 0 0 0 chr12 29272842 29272872 -91984658 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 808 1764 206 67 0 chr12 29273286 29273659 -91983871 + MTD LTR MaLR 20 417 -2 4 808 277 238 46 37 chr12 29274145 29274254 -91983276 + CT-rich Low_complexity Low_complexity 5 114 0 4 808 183 139 0 0 chr12 29274275 29274311 -91983219 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 4 808 918 118 45 19 chr12 29274955 29275110 -91982420 - URR1A DNA MER1_type 0 226 68 4 808 1419 269 8 30 chr12 29277209 29277604 -91979926 + Lx5 LINE L1 6646 7031 -19 4 808 626 0 14 0 chr12 29277604 29277678 -91979852 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 4 808 411 341 132 34 chr12 29277682 29278067 -91979463 - LTR40a LTR ERVL -6 513 91 4 808 913 161 0 7 chr12 29278176 29278320 -91979210 + B1_Mur3 SINE Alu 1 143 -6 4 808 396 125 0 0 chr12 29278351 29278415 -91979115 + (GGAGA)n Simple_repeat Simple_repeat 2 65 0 4 808 198 0 0 0 chr12 29278570 29278592 -91978938 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 808 338 321 48 82 chr12 29278599 29278830 -91978700 + MLT1F2 LTR MaLR 106 328 -232 4 808 947 176 73 21 chr12 29280388 29280579 -91976951 - B3 SINE B2 -15 201 1 4 808 1172 44 0 0 chr12 29280631 29280767 -91976763 - B1_Mm SINE Alu -10 137 2 4 808 267 225 53 66 chr12 29280996 29281072 -91976458 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 4 808 360 0 0 0 chr12 29281499 29281539 -91975991 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 808 426 266 115 0 chr12 29282297 29282436 -91975094 + RMER15 LTR ERVL 406 560 -15 4 808 773 290 110 11 chr12 29282451 29282807 -91974723 + L1MB4 LINE L1 5763 6153 -27 4 808 573 15 0 0 chr12 29284046 29284112 -91973418 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 808 351 0 0 0 chr12 29284112 29284150 -91973380 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 808 242 174 42 42 chr12 29286422 29286470 -91971060 + RMER30 DNA MER1_type 152 199 -3 4 808 442 214 28 28 chr12 29287584 29287690 -91969840 + MIRb SINE MIR 41 146 -122 4 808 848 288 23 5 chr12 29287700 29287920 -91969610 + ID_B1 SINE B4 1 224 0 4 808 624 241 0 78 chr12 29287925 29288078 -91969452 + B1_Mur1 SINE Alu 1 141 -8 4 808 834 239 88 26 chr12 29288087 29288244 -91969286 + B3 SINE B2 1 164 -52 4 808 648 38 0 0 chr12 29288244 29288323 -91969207 + (GA)n Simple_repeat Simple_repeat 1 79 0 4 808 834 239 88 26 chr12 29288323 29288358 -91969172 + B3 SINE B2 165 205 -11 4 808 451 202 17 0 chr12 29289007 29289126 -91968404 + (TA)n Simple_repeat Simple_repeat 2 122 0 4 808 579 263 15 0 chr12 29289135 29289272 -91968258 - B4 SINE B4 -153 139 1 4 808 228 328 463 18 chr12 29289343 29289603 -91967927 + MLT1B LTR MaLR 80 455 -12 4 808 1843 140 72 0 chr12 29289603 29289938 -91967592 + RLTR15 LTR ERVK 1 359 0 4 808 316 272 61 53 chr12 29290046 29290178 -91967352 - RLTR25B LTR ERVK -454 574 442 4 808 733 205 0 0 chr12 29290101 29290218 -91967312 - B1_Mur1 SINE Alu -32 117 1 4 808 254 284 10 21 chr12 29290915 29291012 -91966518 + (CATA)n Simple_repeat Simple_repeat 2 97 0 4 808 1703 221 54 47 chr12 29291016 29291424 -91966106 + MTD LTR MaLR 9 419 0 4 808 229 320 24 8 chr12 29291425 29291551 -91965979 + (CATATA)n Simple_repeat Simple_repeat 6 133 0 4 808 278 302 0 28 chr12 29291503 29291612 -91965918 + (CATA)n Simple_repeat Simple_repeat 1 106 0 4 808 379 260 11 75 chr12 29291566 29291812 -91965718 + (CATA)n Simple_repeat Simple_repeat 1 230 0 4 808 729 61 0 0 chr12 29292057 29292156 -91965374 + (CTG)n Simple_repeat Simple_repeat 2 100 0 4 808 429 268 96 16 chr12 29293622 29293747 -91963783 + MTE2a LTR MaLR 238 372 -7 4 808 645 272 35 23 chr12 29293756 29293951 -91963579 + ID_B1 SINE B4 83 279 -13 4 808 670 166 0 24 chr12 29294132 29294299 -91963231 + C-rich Low_complexity Low_complexity 4 166 0 4 808 552 227 30 19 chr12 29294492 29294638 -91962892 - PB1D10 SINE Alu 0 150 9 4 808 377 307 20 0 chr12 29294552 29294653 -91962877 - ID_B1 SINE B4 -48 176 74 4 808 436 128 0 41 chr12 29295122 29295220 -91962310 + (CATA)n Simple_repeat Simple_repeat 4 97 0 4 808 578 228 0 0 chr12 29295853 29295967 -91961563 - PB1D9 SINE Alu -6 114 1 4 808 653 169 88 7 chr12 29296006 29296143 -91961387 - B1_Mus1 SINE Alu 0 148 1 4 808 570 219 0 0 chr12 29296180 29296285 -91961245 + B1_Mur1 SINE Alu 43 147 -2 4 808 242 312 148 33 chr12 29296308 29296490 -91961040 + B3 SINE B2 1 203 -13 4 808 671 206 0 6 chr12 29296490 29296651 -91960879 + (CA)n Simple_repeat Simple_repeat 1 160 0 4 808 299 317 10 0 chr12 29296720 29296824 -91960706 + B3A SINE B2 94 198 0 4 808 837 181 7 26 chr12 29296786 29296939 -91960591 - RLTR13D3 LTR ERVK -949 165 16 4 808 287 222 0 0 chr12 29298491 29298536 -91958994 - PB1D9 SINE Alu -38 82 38 4 808 302 222 0 65 chr12 29298542 29298619 -91958911 + B1_Mur1 SINE Alu 78 149 0 4 808 494 190 8 0 chr12 29298619 29298740 -91958790 + GA-rich Low_complexity Low_complexity 3 124 0 4 808 217 68 0 43 chr12 29298981 29299027 -91958503 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 808 674 224 281 21 chr12 29300417 29300645 -91956885 + B4 SINE B4 1 287 -5 4 808 288 0 0 0 chr12 29300656 29300688 -91956842 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 808 180 0 0 0 chr12 29300709 29300729 -91956801 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 808 646 231 0 29 chr12 29300945 29301083 -91956447 + B1_Mur1 SINE Alu 11 144 -5 4 808 1401 56 78 0 chr12 29301192 29301352 -91956178 + B2_Mm1a SINE B2 1 160 -33 4 808 186 43 0 0 chr12 29301352 29301375 -91956155 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 808 1401 56 78 0 chr12 29301375 29301393 -91956137 + B2_Mm1a SINE B2 161 191 -2 4 808 220 286 32 0 chr12 29303045 29303108 -91954422 - L2a LINE L2 -2 3424 3360 4 808 2980 58 42 5 chr12 29303131 29303513 -91954017 + MTA_Mm LTR MaLR 1 396 0 4 808 761 225 88 17 chr12 29303533 29303714 -91953816 + B3A SINE B2 1 194 -4 4 808 241 118 19 19 chr12 29305612 29305664 -91951866 + GA-rich Low_complexity Low_complexity 1 52 0 4 808 330 278 21 43 chr12 29305846 29305940 -91951590 + MER45A DNA Tip100 35 126 -52 4 808 379 237 65 0 chr12 29306050 29306143 -91951387 + PB1D10 SINE Alu 1 99 -18 4 808 575 216 166 25 chr12 29306187 29306344 -91951186 + B3A SINE B2 4 182 -16 4 808 340 220 180 0 chr12 29306378 29306478 -91951052 + PB1D9 SINE Alu 2 119 -1 4 808 239 295 76 51 chr12 29306671 29306789 -91950741 - LTR33 LTR ERVL -253 262 142 4 808 639 248 0 29 chr12 29308456 29308593 -91948937 + B1F1 SINE Alu 2 134 -15 4 808 288 0 0 0 chr12 29308623 29308655 -91948875 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 808 1183 50 0 0 chr12 29308770 29308909 -91948621 + B1_Mus1 SINE Alu 1 139 -9 5 808 386 20 20 0 chr12 29308909 29308960 -91948570 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 808 563 282 143 5 chr12 29308964 29309174 -91948356 - 7SK RNA RNA -92 239 1 5 808 263 238 0 16 chr12 29309176 29309240 -91948290 + L1MD1 LINE L1 5920 5982 -377 5 808 325 218 0 25 chr12 29309318 29309398 -91948132 + L1MD1 LINE L1 6149 6226 -16 5 808 772 162 21 35 chr12 29309556 29309697 -91947833 + B1_Mur4 SINE Alu 5 143 -7 5 808 211 356 58 36 chr12 29309802 29309829 -91947701 - B1_Mus1 SINE Alu 0 148 120 5 808 683 210 56 28 chr12 29309829 29309971 -91947559 - B1_Mm SINE Alu -1 146 1 5 808 359 280 68 1 chr12 29309971 29310084 -91947446 - B1F SINE Alu -29 119 4 5 808 290 347 69 40 chr12 29310084 29310171 -91947359 - B4A SINE B4 -199 93 2 5 808 762 192 41 0 chr12 29310857 29311003 -91946527 - B3A SINE B2 -46 152 1 5 808 248 273 209 21 chr12 29311511 29311702 -91945828 - RMER15 LTR ERVL -2 573 347 5 808 734 237 65 0 chr12 29311913 29312078 -91945452 - B3 SINE B2 -29 187 12 5 808 2236 122 111 0 chr12 29312078 29312448 -91945082 - MTC LTR MaLR 0 421 11 5 808 298 309 80 13 chr12 29312477 29312628 -91944902 - Lx8 LINE L1 -153 7320 7160 5 808 1057 58 7 0 chr12 29312643 29312780 -91944750 - B1_Mus1 SINE Alu -1 147 10 5 808 1211 76 41 0 chr12 29312783 29312954 -91944576 - B2_Mm1t SINE B2 -2 191 14 5 808 415 244 121 8 chr12 29313107 29313239 -91944291 - B3 SINE B2 -23 193 47 5 808 215 282 37 37 chr12 29313395 29313476 -91944054 + PB1D10 SINE Alu 26 106 -11 5 808 552 179 68 43 chr12 29313609 29313726 -91943804 - PB1D9 SINE Alu 0 120 1 5 808 626 80 223 0 chr12 29313786 29313898 -91943632 - B1_Mus1 SINE Alu -6 142 6 5 808 364 183 192 80 chr12 29313898 29313911 -91943619 - ID_B1 SINE B4 -6 218 80 5 808 537 153 50 10 chr12 29313956 29314055 -91943475 - B1_Mur2 SINE Alu 0 149 47 5 808 274 189 38 0 chr12 29314126 29314179 -91943351 - ID_B1 SINE B4 -66 158 104 5 808 288 205 133 86 chr12 29314288 29314416 -91943114 + B1_Mm SINE Alu 1 134 -13 5 808 752 234 60 15 chr12 29314857 29315057 -91942473 - B3 SINE B2 -7 209 1 5 808 226 321 123 0 chr12 29316731 29316837 -91940693 + PB1D7 SINE Alu 2 120 0 5 808 742 126 108 29 chr12 29318292 29318431 -91939099 + B1_Mur4 SINE Alu 1 150 0 5 808 486 274 18 9 chr12 29319555 29319669 -91937861 + ID_B1 SINE B4 97 211 -13 5 808 297 213 158 13 chr12 29319870 29319946 -91937584 + B3 SINE B2 29 115 -101 5 808 915 104 7 0 chr12 29321134 29321269 -91936261 + B1_Mur4 SINE Alu 9 144 -6 5 808 344 198 111 94 chr12 29321471 29321588 -91935942 + PB1D9 SINE Alu 2 120 0 5 808 727 97 100 50 chr12 29321763 29321883 -91935647 + B1_Mus2 SINE Alu 22 147 0 5 808 1286 126 0 5 chr12 29322273 29322464 -91935066 + B2_Mm1t SINE B2 2 191 -2 5 808 1083 72 43 0 chr12 29322570 29322709 -91934821 + B1_Mm SINE Alu 1 145 -2 5 808 225 0 0 0 chr12 29322709 29322734 -91934796 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 5 808 1094 113 0 0 chr12 29322954 29323104 -91934426 - B1_Mur4 SINE Alu 0 150 1 5 808 430 308 29 22 chr12 29323137 29323273 -91934257 + B1_Mur4 SINE Alu 5 141 -9 5 808 36 70 0 0 chr12 29323295 29323366 -91934164 + AT_rich Low_complexity Low_complexity 1 71 0 5 808 334 242 40 0 chr12 29323554 29323653 -91933877 - Lx7 LINE L1 -405 7291 7189 5 808 1136 96 84 6 chr12 29323771 29323950 -91933580 - B2_Mm1t SINE B2 0 193 1 5 808 523 325 16 33 chr12 29324099 29324155 -91933375 - L1MD LINE L1 -2136 4010 3958 5 808 281 47 23 0 chr12 29324155 29324198 -91933332 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 808 1224 29 0 0 chr12 29324198 29324337 -91933193 - B1_Mus1 SINE Alu -9 139 1 5 808 523 325 16 33 chr12 29324337 29324524 -91933006 - L1MD LINE L1 -2189 3957 3771 5 808 907 171 29 29 chr12 29324563 29324738 -91932792 + B2_Mm2 SINE B2 2 176 -19 5 808 1281 34 0 0 chr12 29324742 29324889 -91932641 + B1_Mm SINE Alu 1 147 0 5 808 250 138 0 65 chr12 29324890 29324952 -91932578 + A-rich Low_complexity Low_complexity 2 59 0 5 808 388 221 228 9 chr12 29324982 29325096 -91932434 - B1F SINE Alu -6 143 5 5 808 361 312 12 30 chr12 29325122 29325287 -91932243 - L1MD LINE L1 -2477 3669 3508 5 808 1562 48 21 0 chr12 29325291 29325479 -91932051 - B2_Mm1a SINE B2 0 193 2 5 808 1028 119 21 0 chr12 29325523 29325666 -91931864 + B1_Mus1 SINE Alu 3 148 0 5 808 607 234 0 79 chr12 29325704 29325843 -91931687 - ID_B1 SINE B4 0 224 97 5 808 3211 92 100 10 chr12 29325847 29325955 -91931575 - Lx LINE L1 0 6654 6535 5 808 216 0 0 0 chr12 29325955 29325979 -91931551 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 5 808 3211 92 100 10 chr12 29325979 29326362 -91931168 - Lx LINE L1 -120 6534 6120 5 808 23 68 0 0 chr12 29326366 29326410 -91931120 + AT_rich Low_complexity Low_complexity 1 44 0 5 808 1086 215 9 5 chr12 29326438 29326648 -91930882 + B3 SINE B2 2 212 -4 5 808 343 276 14 50 chr12 29326649 29326790 -91930740 - L1MD LINE L1 -2677 3469 3334 5 808 846 251 20 20 chr12 29326839 29327034 -91930496 - B3 SINE B2 -17 199 5 5 808 921 193 0 0 chr12 29327289 29327439 -91930091 - B1_Mur4 SINE Alu 0 150 1 5 808 396 0 0 0 chr12 29327555 29327599 -91929931 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 808 279 228 228 0 chr12 29327696 29327775 -91929755 + PB1D7 SINE Alu 12 108 -12 5 808 648 241 44 12 chr12 29327828 29327988 -91929542 + RSINE1 SINE B4 1 165 0 5 808 426 256 225 33 chr12 29328896 29329078 -91928452 + MTE2a LTR MaLR 151 367 -12 5 808 1343 80 11 0 chr12 29329085 29329261 -91928269 + B2_Mm1t SINE B2 2 179 -14 5 808 954 71 0 0 chr12 29329266 29329393 -91928137 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 5 808 1100 86 0 0 chr12 29329521 29329660 -91927870 + B1_Mus2 SINE Alu 2 140 -7 5 808 252 319 14 0 chr12 29329696 29329765 -91927765 + B1F1 SINE Alu 2 71 -78 5 808 352 291 0 0 chr12 29329784 29329863 -91927667 - PB1D10 SINE Alu -26 91 13 5 808 651 26 0 0 chr12 29329900 29329977 -91927553 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 5 808 796 150 8 0 chr12 29329977 29330097 -91927433 - B1_Mus1 SINE Alu -8 140 20 5 808 270 0 0 0 chr12 29330097 29330127 -91927403 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 808 781 177 177 0 chr12 29330433 29330625 -91926905 + URR1A DNA MER1_type 1 226 0 5 808 824 169 35 14 chr12 29330988 29331132 -91926398 + B1_Mur2 SINE Alu 1 147 -2 5 808 489 168 231 39 chr12 29331404 29331534 -91925996 + B3 SINE B2 1 155 -61 5 808 372 43 0 0 chr12 29331536 29331582 -91925948 + (CCA)n Simple_repeat Simple_repeat 2 47 0 5 808 444 19 0 0 chr12 29331744 29331797 -91925733 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 808 1032 127 7 0 chr12 29331969 29332111 -91925419 - B1_Mus2 SINE Alu -3 144 2 5 808 256 158 0 0 chr12 29332114 29332152 -91925378 - B3A SINE B2 -160 38 1 5 808 213 39 0 0 chr12 29332204 29332230 -91925300 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 808 999 69 85 0 chr12 29332232 29332362 -91925168 - B1_Mus2 SINE Alu -5 142 2 5 808 372 285 27 74 chr12 29332550 29332608 -91924922 - RSINE1 SINE B4 -17 148 89 5 808 531 232 88 0 chr12 29332608 29332733 -91924797 - B1_Mur2 SINE Alu -13 136 1 5 808 372 285 27 74 chr12 29332733 29332822 -91924708 - RSINE1 SINE B4 -77 88 8 5 808 1055 89 0 40 chr12 29332866 29333018 -91924512 - B1_Mus2 SINE Alu -1 146 1 5 808 487 252 90 15 chr12 29333022 29333155 -91924375 - ID_B1 SINE B4 -1 223 81 5 808 234 128 0 0 chr12 29333183 29333222 -91924308 + (T)n Simple_repeat Simple_repeat 1 39 0 5 808 462 308 0 0 chr12 29333383 29333487 -91924043 - B1F SINE Alu -45 104 1 5 808 598 238 281 0 chr12 29333527 29333691 -91923839 + B3 SINE B2 1 210 -6 5 808 278 203 27 55 chr12 29333905 29333978 -91923552 - RSINE1 SINE B4 0 165 95 5 808 249 180 60 0 chr12 29334838 29334888 -91922642 - ID_B1 SINE B4 -1 223 171 5 808 609 274 110 0 chr12 29334962 29335126 -91922404 - ID_B1 SINE B4 -42 182 1 5 808 418 241 3 2 chr12 29335156 29335249 -91922281 + B1F1 SINE Alu 6 99 -21 5 808 293 233 47 0 chr12 29335722 29335808 -91921722 + L1MC1 LINE L1 5096 5185 -961 5 808 865 158 0 58 chr12 29335809 29335964 -91921566 + B1_Mus2 SINE Alu 2 147 0 5 808 420 274 151 20 chr12 29335971 29336276 -91921254 + L1MC1 LINE L1 5661 6005 -328 5 808 572 274 14 36 chr12 29336294 29336434 -91921096 - ID_B1 SINE B4 -4 220 84 5 808 462 235 58 14 chr12 29336434 29336572 -91920958 - B1F2 SINE Alu -4 145 2 5 808 229 372 0 13 chr12 29336572 29336594 -91920936 - B4 SINE B4 -205 87 66 5 808 243 296 89 22 chr12 29337127 29337217 -91920313 + B3 SINE B2 8 103 -113 5 808 23 54 0 0 chr12 29337227 29337264 -91920266 + AT_rich Low_complexity Low_complexity 1 37 0 5 808 270 0 0 0 chr12 29337700 29337730 -91919800 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 5 808 666 199 30 15 chr12 29338115 29338248 -91919282 - B1_Mus1 SINE Alu -9 139 5 5 808 1197 55 7 0 chr12 29338285 29338430 -91919100 - B1_Mus2 SINE Alu 0 147 2 5 808 192 40 0 0 chr12 29338497 29338522 -91919008 + (TGG)n Simple_repeat Simple_repeat 2 26 0 5 808 311 254 64 0 chr12 29338572 29338693 -91918837 - PB1D7 SINE Alu -4 145 16 5 808 216 0 0 0 chr12 29338740 29338764 -91918766 + (T)n Simple_repeat Simple_repeat 1 24 0 5 808 316 221 103 21 chr12 29338884 29338981 -91918549 - B1F SINE Alu -3 146 42 5 808 195 69 0 0 chr12 29339302 29339331 -91918199 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 6 808 1837 166 144 0 chr12 29339449 29339810 -91917720 + MTC LTR MaLR 1 413 -8 6 808 739 207 14 22 chr12 29340864 29341002 -91916528 - B1F2 SINE Alu -7 142 6 6 808 1005 118 94 6 chr12 29341202 29341372 -91916158 - B2_Mm1a SINE B2 -8 185 1 6 808 317 269 30 8 chr12 29341473 29341569 -91915961 - B1F1 SINE Alu -1 119 19 6 808 1136 92 0 0 chr12 29341572 29341713 -91915817 + B1_Mus1 SINE Alu 1 141 -7 6 808 745 102 45 45 chr12 29341758 29341892 -91915638 - B1F2 SINE Alu 0 149 16 6 808 257 266 25 12 chr12 29341909 29341989 -91915541 - ID4_ SINE ID -1 82 2 6 808 22 0 0 0 chr12 29344413 29344435 -91913095 + AT_rich Low_complexity Low_complexity 1 22 0 6 808 529 296 33 67 chr12 29344900 29345200 -91912330 + B4A SINE B4 1 290 -2 6 808 472 300 23 8 chr12 29345216 29345347 -91912183 + ID_B1 SINE B4 79 211 -13 6 808 217 237 119 0 chr12 29345530 29345589 -91911941 - ID4_ SINE ID -16 67 2 6 808 181 170 264 0 chr12 29345759 29345812 -91911718 - L3 LINE CR1 -149 4340 4274 6 808 322 272 223 7 chr12 29346105 29346253 -91911277 - B3A SINE B2 -18 180 1 6 808 289 250 0 32 chr12 29346254 29346316 -91911214 - B4A SINE B4 -64 228 169 6 808 200 228 18 0 chr12 29346372 29346429 -91911101 + T-rich Low_complexity Low_complexity 5 62 0 6 808 209 57 0 28 chr12 29346548 29346584 -91910946 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 6 808 552 89 165 11 chr12 29346584 29346675 -91910855 - B1_Mus2 SINE Alu 0 147 43 6 808 1640 32 0 0 chr12 29346681 29346867 -91910663 - B2_Mm1a SINE B2 -6 187 2 6 808 1427 239 35 53 chr12 29346894 29347070 -91910460 + ORR1D2 LTR MaLR 1 173 -197 6 808 2053 129 99 0 chr12 29347070 29347403 -91910127 + ORR1B2 LTR MaLR 1 366 -1 6 808 1427 239 35 53 chr12 29347403 29347602 -91909928 + ORR1D2 LTR MaLR 174 369 -1 6 808 706 180 71 14 chr12 29347622 29347763 -91909767 - B3A SINE B2 -44 154 6 6 808 5436 44 11 0 chr12 29347920 29348576 -91908954 - L1Md_F2 LINE L1 0 6582 5920 6 808 359 178 2 37 chr12 29348627 29348709 -91908821 + PB1D10 SINE Alu 46 114 -3 6 808 6725 124 34 12 chr12 29348706 29349772 -91907758 + RLTR21 LTR ERVK 5 1093 -479 6 808 382 226 0 102 chr12 29349778 29349896 -91907634 + RLTR21 LTR ERVK 1466 1571 -1 6 808 271 232 43 0 chr12 29349899 29349968 -91907562 + ID4_ SINE ID 6 77 -6 6 808 271 286 88 68 chr12 29350752 29351015 -91906515 + RMER10B LTR ERVL 33 300 -98 6 808 248 302 162 11 chr12 29351194 29351385 -91906145 + MER119 DNA MER1_type 102 321 -262 6 808 684 286 6 18 chr12 29351387 29351551 -91905979 + RSINE1 SINE B4 2 163 -2 6 808 1093 246 131 7 chr12 29351708 29351998 -91905532 - MTEb LTR MaLR 0 379 54 6 808 411 217 0 12 chr12 29352973 29353057 -91904473 - B3 SINE B2 0 216 134 6 808 198 0 0 0 chr12 29353712 29353734 -91903796 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 808 444 193 254 9 chr12 29353736 29353846 -91903684 - B1_Mur1 SINE Alu -10 139 3 6 808 30 0 0 0 chr12 29354277 29354307 -91903223 + AT_rich Low_complexity Low_complexity 1 30 0 6 808 1601 32 0 16 chr12 29354314 29354503 -91903027 + B2_Mm1a SINE B2 1 186 -7 6 808 791 149 0 36 chr12 29354503 29354634 -91902896 - B1_Mur4 SINE Alu -5 145 17 6 808 1389 86 11 0 chr12 29354678 29354864 -91902666 - B2_Mm1t SINE B2 -5 188 1 6 808 327 280 47 87 chr12 29356034 29356206 -91901324 + MLT1A1 LTR MaLR 244 408 0 6 808 31 0 0 0 chr12 29356206 29356237 -91901293 + AT_rich Low_complexity Low_complexity 1 31 0 6 808 202 143 41 0 chr12 29356300 29356349 -91901181 + GA-rich Low_complexity Low_complexity 1 51 0 6 808 313 136 33 17 chr12 29356929 29356989 -91900541 + LTR40b LTR ERVL 386 446 -16 6 808 394 214 56 11 chr12 29357115 29357205 -91900325 - PB1D10 SINE Alu 0 117 24 6 808 651 289 92 22 chr12 29357245 29357429 -91900101 + B3 SINE B2 20 216 0 6 808 753 99 70 78 chr12 29357466 29357608 -91899922 + B1_Mur3 SINE Alu 9 149 0 6 808 425 272 10 10 chr12 29357695 29357799 -91899731 - PB1D10 SINE Alu -9 108 5 6 808 584 231 115 0 chr12 29357840 29357970 -91899560 + B1_Mur1 SINE Alu 2 146 -3 6 808 201 74 0 0 chr12 29358619 29358646 -91898884 + (T)n Simple_repeat Simple_repeat 1 27 0 6 808 1135 57 0 0 chr12 29358656 29358797 -91898733 - B1_Mus1 SINE Alu 0 148 8 6 808 1492 73 5 0 chr12 29359077 29359269 -91898261 - B2_Mm1t SINE B2 0 193 1 6 808 863 238 47 33 chr12 29359358 29359571 -91897959 - B3 SINE B2 0 216 1 6 808 843 252 144 70 chr12 29359577 29359918 -91897612 + MTE2a LTR MaLR 7 372 -7 6 809 200 111 0 77 chr12 29360288 29360327 -91897203 + G-rich Low_complexity Low_complexity 3 38 0 6 809 472 222 50 0 chr12 29361369 29361468 -91896062 + B3 SINE B2 105 208 -8 6 809 1351 51 51 0 chr12 29361655 29361810 -91895720 + B2_Mm2 SINE B2 1 158 -37 6 809 180 0 0 0 chr12 29361810 29361830 -91895700 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 809 1351 51 51 0 chr12 29361830 29361851 -91895679 + B2_Mm2 SINE B2 159 185 -10 6 809 436 248 38 9 chr12 29361936 29362042 -91895488 - PB1D10 SINE Alu 0 117 9 6 809 21 0 0 0 chr12 29362074 29362095 -91895435 + AT_rich Low_complexity Low_complexity 1 21 0 6 809 270 292 0 14 chr12 29362512 29362585 -91894945 - ID4 SINE ID -8 75 4 6 809 2917 135 157 34 chr12 29362849 29363106 -91894424 - RMER6C LTR ERVK -26 664 341 6 809 585 28 0 0 chr12 29363106 29363177 -91894353 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 809 1142 66 0 0 chr12 29363178 29363315 -91894215 - B1_Mus1 SINE Alu -11 137 1 6 809 2917 135 157 34 chr12 29363315 29363646 -91893884 - RMER6C LTR ERVK -350 340 3 6 809 268 256 71 28 chr12 29363646 29363787 -91893743 - L1M5 LINE L1 -2496 3650 3504 6 809 676 192 24 0 chr12 29363932 29364057 -91893473 + ID_B1 SINE B4 86 213 -11 6 809 324 286 55 0 chr12 29364054 29364145 -91893385 - RSINE1 SINE B4 -65 100 5 6 809 377 197 0 13 chr12 29364802 29364879 -91892651 + ID_B1 SINE B4 148 223 -1 6 809 1136 128 159 0 chr12 29365031 29365226 -91892304 - URR1A DNA MER1_type 0 226 1 6 809 4716 60 5 22 chr12 29366520 29367117 -91890413 + LTRIS_Mus LTR ERV1 1 587 0 6 809 1264 48 0 0 chr12 29367202 29367349 -91890181 + B1_Mus1 SINE Alu 2 148 0 6 809 233 29 29 0 chr12 29367706 29367740 -91889790 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 809 1176 50 0 7 chr12 29367740 29367880 -91889650 - B1_Mm SINE Alu -8 139 1 6 809 555 162 38 0 chr12 29367906 29368011 -91889519 - B1_Mur1 SINE Alu -6 143 35 6 809 409 167 128 0 chr12 29368009 29368087 -91889443 - B1F2 SINE Alu -58 91 4 6 809 322 277 36 0 chr12 29368015 29368098 -91889432 - MT2B LTR ERVL -361 240 155 6 809 723 238 27 102 chr12 29368106 29368331 -91889199 - B3 SINE B2 -6 210 3 6 809 475 287 84 104 chr12 29368344 29368546 -91888984 - ID_B1 SINE B4 -26 198 1 6 809 213 224 41 0 chr12 29368585 29368634 -91888896 - B1F2 SINE Alu -90 59 9 6 809 2085 123 96 14 chr12 29368796 29369151 -91888379 - ORR1B1 LTR MaLR -8 386 3 6 809 515 258 47 0 chr12 29369242 29369370 -91888160 - RSINE1 SINE B4 -2 163 30 6 809 563 261 65 0 chr12 29369371 29369509 -91888021 - B1F2 SINE Alu -2 147 1 6 809 227 288 13 27 chr12 29369532 29369607 -91887923 - PB1 SINE Alu -42 85 12 6 809 239 259 0 37 chr12 29370152 29370316 -91887214 + (TGGG)n Simple_repeat Simple_repeat 2 159 0 6 809 289 273 0 0 chr12 29371129 29371195 -91886335 - ID4_ SINE ID -14 69 4 6 809 1265 98 35 0 chr12 29371930 29372103 -91885427 + B2_Mm1t SINE B2 1 179 -14 6 809 346 254 25 42 chr12 29372546 29372665 -91884865 + PB1D10 SINE Alu 1 117 0 6 809 1473 229 119 19 chr12 29372709 29373078 -91884452 + MTD LTR MaLR 1 406 -13 6 809 1169 88 0 0 chr12 29373657 29373804 -91883726 - B1_Mus2 SINE Alu 0 147 1 6 809 1352 127 218 15 chr12 29374018 29374289 -91883241 + ORR1C1 LTR MaLR 45 370 -8 6 809 497 238 131 0 chr12 29374690 29374812 -91882718 + B3A SINE B2 7 144 -54 6 809 180 0 0 0 chr12 29374916 29374936 -91882594 + (A)n Simple_repeat Simple_repeat 1 20 0 6 809 389 335 53 0 chr12 29374999 29375169 -91882361 + RMER15-int LTR ERVL 4818 4996 -3 6 809 371 264 246 21 chr12 29375256 29375492 -91882038 + RMER15 LTR ERVL 270 558 -17 6 809 210 37 0 0 chr12 29376525 29376552 -91880978 + (CAGGC)n Simple_repeat Simple_repeat 2 28 0 6 809 525 44 0 0 chr12 29377265 29377333 -91880197 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 809 282 29 0 0 chr12 29382184 29382219 -91875311 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 809 558 291 14 7 chr12 29383819 29383961 -91873569 - B1_Mur1 SINE Alu -6 143 1 6 809 255 145 15 46 chr12 29387315 29387380 -91870150 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 809 390 275 124 135 chr12 29387455 29387615 -91869915 + MLT1A LTR MaLR 1 144 -230 6 809 184 30 29 29 chr12 29387615 29387649 -91869881 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6 809 886 171 13 20 chr12 29387657 29387806 -91869724 - B1_Mur3 SINE Alu 0 149 2 6 809 390 275 124 135 chr12 29387806 29388014 -91869516 + MLT1A LTR MaLR 147 374 0 6 809 370 331 64 14 chr12 29390025 29390166 -91867364 + ORR1E LTR MaLR 1 148 -211 6 809 264 218 0 0 chr12 29392539 29392601 -91864929 + L1M2 LINE L1 2414 2466 -4383 7 809 2557 147 57 20 chr12 29393330 29393822 -91863708 - RLTR28 LTR ERVL -14 510 1 7 809 1711 172 178 14 chr12 29396936 29397296 -91860234 - MTD LTR MaLR 0 419 1 7 809 1527 134 254 3 chr12 29397564 29397871 -91859659 + ORR1C2 LTR MaLR 1 384 0 7 809 405 0 0 0 chr12 29398764 29398809 -91858721 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 809 1140 29 0 80 chr12 29400345 29400495 -91857035 + B1_Mus2 SINE Alu 1 138 -9 7 809 188 0 74 0 chr12 29400505 29400532 -91856998 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 809 1306 55 48 48 chr12 29401103 29401292 -91856238 + B2_Mm2 SINE B2 1 189 -6 7 809 888 61 0 0 chr12 29401304 29401419 -91856111 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 7 809 2623 92 30 38 chr12 29401459 29401854 -91855676 + MTB LTR MaLR 9 400 0 7 809 393 351 0 0 chr12 29403801 29403949 -91853581 + (CCTG)n Simple_repeat Simple_repeat 4 151 0 7 809 1418 230 54 25 chr12 29404675 29405028 -91852502 + MTEa LTR MaLR 8 370 -9 7 809 859 261 110 35 chr12 29405147 29405437 -91852093 - ORR1E LTR MaLR -6 353 42 7 809 315 191 0 0 chr12 29407379 29407442 -91850088 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 809 1126 103 0 7 chr12 29408223 29408370 -91849160 + B1_Mus1 SINE Alu 2 147 -1 7 809 207 133 0 0 chr12 29408370 29408415 -91849115 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 7 809 365 83 0 0 chr12 29408730 29408778 -91848752 + ORR1A4 LTR MaLR 276 323 -6 7 809 872 257 59 56 chr12 29409697 29409985 -91847545 - B4 SINE B4 -1 291 3 7 809 1011 132 6 6 chr12 29410025 29410200 -91847330 - L1_Mm LINE L1 -1541 4342 4168 7 809 351 329 46 7 chr12 29411336 29411489 -91846041 + MER2 DNA MER2_type 187 345 0 7 809 225 333 24 0 chr12 29412883 29413006 -91844524 - L1M5 LINE L1 -275 5898 5773 7 809 823 291 87 8 chr12 29413073 29413326 -91844204 - B4A SINE B4 -8 284 12 7 809 539 259 17 17 chr12 29413350 29413468 -91844062 - B1_Mur3 SINE Alu -31 118 1 7 809 339 279 25 0 chr12 29413686 29413765 -91843765 - ID4 SINE ID 0 83 3 7 809 385 287 0 80 chr12 29413789 29413914 -91843616 - PB1D10 SINE Alu 0 117 3 7 809 255 299 33 44 chr12 29413833 29413924 -91843606 - B4A SINE B4 -125 167 78 7 809 1778 160 103 21 chr12 29413976 29414216 -91843314 + MTC LTR MaLR 1 242 -179 7 809 231 36 0 0 chr12 29414216 29414244 -91843286 + (C)n Simple_repeat Simple_repeat 1 28 0 7 809 1778 160 103 21 chr12 29414244 29414392 -91843138 + MTC LTR MaLR 243 420 -1 7 809 317 320 140 0 chr12 29414534 29414684 -91842846 - L1M5 LINE L1 -744 5402 5232 7 809 239 250 132 0 chr12 29414748 29414816 -91842714 - ID4_ SINE ID -4 79 3 7 809 1600 42 11 0 chr12 29414976 29415165 -91842365 + B2_Mm1a SINE B2 2 192 -1 7 809 385 263 67 48 chr12 29416028 29416180 -91841350 - PB1D10 SINE Alu -5 144 3 7 809 239 244 0 15 chr12 29417020 29417157 -91840373 + (CAGA)n Simple_repeat Simple_repeat 4 138 0 7 809 1342 105 16 0 chr12 29417350 29417541 -91839989 - B2_Mm2 SINE B2 0 195 2 7 809 7036 58 14 38 chr12 29417720 29418125 -91839405 + RLTR13B1 LTR ERVK 1 409 -484 7 809 1210 36 0 0 chr12 29418125 29418262 -91839268 + B1_Mm SINE Alu 1 137 -10 7 809 257 0 30 0 chr12 29418262 29418295 -91839235 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 809 7036 58 14 38 chr12 29418295 29418803 -91838727 + RLTR13B1 LTR ERVK 410 892 -1 7 809 739 214 8 0 chr12 29418877 29419008 -91838522 - ID_B1 SINE B4 -8 216 85 7 809 251 282 24 134 chr12 29418899 29419026 -91838504 - MT2B2 LTR ERVL -319 265 153 7 809 1100 199 187 16 chr12 29419262 29419578 -91837952 + ORR1D1 LTR MaLR 1 370 -4 7 809 207 0 0 0 chr12 29419578 29419601 -91837929 + (CAGT)n Simple_repeat Simple_repeat 2 24 0 7 809 180 0 0 0 chr12 29419731 29419751 -91837779 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 7 809 200 185 0 18 chr12 29419751 29419806 -91837724 + (TATG)n Simple_repeat Simple_repeat 2 55 0 7 809 1208 50 0 0 chr12 29419841 29419980 -91837550 + B1_Mus2 SINE Alu 3 141 -6 7 809 186 43 0 0 chr12 29419985 29420008 -91837522 + (A)n Simple_repeat Simple_repeat 1 23 0 7 809 334 310 92 0 chr12 29420011 29420098 -91837432 - RSINE1 SINE B4 -68 97 3 7 809 881 216 67 26 chr12 29420769 29420964 -91836566 + B3 SINE B2 1 203 -13 7 809 22 35 0 0 chr12 29420975 29421004 -91836526 + AT_rich Low_complexity Low_complexity 1 29 0 7 809 404 217 256 0 chr12 29421436 29421565 -91835965 - RSINE1 SINE B4 -2 163 2 7 809 227 200 27 110 chr12 29422245 29422318 -91835212 + PB1D9 SINE Alu 53 119 -1 7 809 398 296 12 105 chr12 29424034 29424186 -91833344 + RSINE1 SINE B4 12 149 -16 7 809 546 114 0 0 chr12 29424186 29424274 -91833256 + (CA)n Simple_repeat Simple_repeat 2 89 0 7 809 720 100 0 0 chr12 29424487 29424607 -91832923 + (CTCA)n Simple_repeat Simple_repeat 3 122 0 7 809 363 240 0 26 chr12 29424755 29424832 -91832698 - B3A SINE B2 -122 76 2 7 809 829 241 92 25 chr12 29424879 29425075 -91832455 - B3 SINE B2 -6 210 2 7 809 346 286 83 106 chr12 29425124 29425272 -91832258 + L1M5 LINE L1 5043 5195 -951 7 809 1299 62 77 17 chr12 29425272 29425453 -91832077 + B2_Mm1t SINE B2 2 193 0 7 809 346 276 73 118 chr12 29425453 29425615 -91831915 + L1M5 LINE L1 5192 5354 -792 7 809 487 252 101 0 chr12 29425626 29425745 -91831785 + RSINE1 SINE B4 3 133 -32 7 809 237 306 72 59 chr12 29426450 29426603 -91830927 + MLT1J2 LTR MaLR 3 157 -291 7 809 841 249 20 35 chr12 29427005 29427205 -91830325 - B3A SINE B2 0 198 2 7 809 294 29 0 0 chr12 29427248 29427283 -91830247 + (TATG)n Simple_repeat Simple_repeat 4 38 0 7 809 2019 120 166 3 chr12 29427328 29427671 -91829859 - MTC LTR MaLR -8 413 15 7 809 384 300 16 32 chr12 29427665 29427789 -91829741 - ID_B1 SINE B4 -25 199 78 7 809 261 0 0 0 chr12 29427921 29427950 -91829580 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 809 570 181 277 6 chr12 29428331 29428610 -91828920 - L1M2 LINE L1 -530 5782 5404 7 809 642 89 0 0 chr12 29428981 29429071 -91828459 + (CA)n Simple_repeat Simple_repeat 2 91 0 7 809 1944 170 32 67 chr12 29429250 29429344 -91828186 + MTC LTR MaLR 1 97 -324 7 809 1585 32 21 0 chr12 29429344 29429532 -91827998 + B2_Mm1a SINE B2 2 193 0 7 809 1944 170 32 67 chr12 29429532 29429840 -91827690 + MTC LTR MaLR 98 389 -32 7 809 229 118 19 19 chr12 29429840 29429892 -91827638 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 7 809 226 135 0 0 chr12 29429895 29429932 -91827598 + ORR1B2 LTR MaLR 331 367 0 7 809 658 236 69 103 chr12 29430424 29430627 -91826903 - B3A SINE B2 -1 197 2 7 809 1114 188 56 0 chr12 29430664 29430861 -91826669 - B3 SINE B2 -7 209 2 7 809 415 134 45 0 chr12 29430899 29430966 -91826564 - B1_Mus2 SINE Alu -33 114 45 7 809 1228 74 0 0 chr12 29432698 29432846 -91824684 - B1_Mus1 SINE Alu 0 148 1 7 809 503 171 0 35 chr12 29432851 29432966 -91824564 - L1MB2 LINE L1 -48 6123 6013 7 809 329 344 14 53 chr12 29433576 29433785 -91823745 - L1MB2 LINE L1 -318 5853 5653 7 809 241 252 37 75 chr12 29433845 29433952 -91823578 - ID_B1 SINE B4 -2 222 120 7 809 916 109 39 0 chr12 29433958 29434086 -91823444 - B1_Mus1 SINE Alu -14 134 2 7 809 784 162 44 0 chr12 29434092 29434228 -91823302 - B1_Mus1 SINE Alu -1 147 6 7 809 542 277 58 7 chr12 29434354 29434492 -91823038 - ID_B1 SINE B4 -1 223 79 7 809 416 257 108 18 chr12 29434518 29434629 -91822901 - RSINE1 SINE B4 -42 123 3 7 809 290 294 65 56 chr12 29434658 29434766 -91822764 - PB1D7 SINE Alu 0 120 12 7 809 588 193 133 0 chr12 29435701 29435836 -91821694 - RMER5 LTR ERV1 0 534 382 7 809 431 204 235 0 chr12 29435891 29436023 -91821507 - RMER5 LTR ERV1 -251 283 121 7 809 270 0 0 0 chr12 29438069 29438099 -91819431 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 809 783 217 70 16 chr12 29438293 29438480 -91819050 - B3 SINE B2 0 216 20 7 809 1087 199 44 0 chr12 29438824 29439030 -91818500 - B3 SINE B2 0 216 2 7 809 1179 72 0 13 chr12 29439157 29439312 -91818218 - B2_Mm2 SINE B2 -41 154 2 7 809 477 90 3 14 chr12 29439312 29439384 -91818146 - B1_Mus2 SINE Alu -12 135 32 7 809 241 188 12 36 chr12 29440286 29440369 -91817161 + (TAAA)n Simple_repeat Simple_repeat 2 82 0 7 809 521 276 181 9 chr12 29440445 29440671 -91816859 - MLT1D LTR MaLR -7 498 250 7 809 428 254 141 38 chr12 29440783 29440967 -91816563 - LTR73 LTR ERV1 -130 442 240 7 809 260 167 13 120 chr12 29441287 29441362 -91816168 - ID_B1 SINE B4 -1 223 157 7 809 326 327 95 45 chr12 29441806 29441985 -91815545 + LTR16A LTR ERVL 25 212 -239 7 809 3627 18 0 0 chr12 29442384 29442780 -91814750 + MTA_Mm LTR MaLR 1 396 0 7 809 9644 18 5 0 chr12 29442780 29443873 -91813657 + MTA_Mm-int LTR MaLR 1 1098 0 7 809 3584 20 0 0 chr12 29443873 29444269 -91813261 + MTA_Mm LTR MaLR 1 396 0 7 809 1087 64 43 0 chr12 29444378 29444519 -91813011 - B1_Mus1 SINE Alu 0 148 2 7 809 22 35 0 0 chr12 29445136 29445165 -91812365 + AT_rich Low_complexity Low_complexity 1 29 0 7 809 266 125 21 0 chr12 29445244 29445292 -91812238 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 809 232 235 0 0 chr12 29445344 29445395 -91812135 + CT-rich Low_complexity Low_complexity 2 52 0 7 809 426 69 0 0 chr12 29445397 29445455 -91812075 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 809 423 246 56 32 chr12 29445471 29445597 -91811933 - B1_Mus2 SINE Alu -17 130 2 7 809 854 269 46 5 chr12 29445615 29445809 -91811721 - B4A SINE B4 -89 203 2 7 809 380 304 56 9 chr12 29445992 29446138 -91811392 + MIRc SINE MIR 17 181 -87 8 809 1007 211 56 5 chr12 29446697 29446892 -91810638 + B3 SINE B2 6 210 -6 8 809 312 226 0 0 chr12 29447341 29447394 -91810136 - B3A SINE B2 -145 53 1 8 809 1904 109 0 88 chr12 29447699 29448040 -91809490 - ORR1A4 LTR MaLR -8 321 11 8 809 1141 203 19 0 chr12 29448432 29448644 -91808886 + B3 SINE B2 1 216 0 8 809 375 292 17 14 chr12 29449038 29449165 -91808365 - MIRc SINE MIR -48 160 37 8 809 801 236 202 0 chr12 29449498 29449735 -91807795 - B4A SINE B4 -6 286 2 8 809 483 239 110 0 chr12 29449757 29449866 -91807664 - RSINE1 SINE B4 -35 130 10 8 809 790 232 22 0 chr12 29449884 29450031 -91807499 - B1_Mur1 SINE Alu 0 149 1 8 809 693 36 0 0 chr12 29452496 29452580 -91804950 + (TC)n Simple_repeat Simple_repeat 1 84 0 8 809 210 71 0 0 chr12 29452597 29452625 -91804905 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 8 809 293 352 11 0 chr12 29452635 29452726 -91804804 - ID_B1 SINE B4 -45 179 88 8 809 1416 204 29 117 chr12 29452789 29453199 -91804331 - ORR1D1 LTR MaLR 0 374 1 8 809 1203 93 0 0 chr12 29453488 29453650 -91803880 + RMER10B LTR ERVL 1 162 -236 8 809 903 45 0 0 chr12 29453658 29453770 -91803760 + (TC)n Simple_repeat Simple_repeat 1 112 0 8 809 2012 149 20 25 chr12 29453777 29454184 -91803346 - RMER17C LTR ERVK -5 405 1 8 809 1012 180 46 0 chr12 29454184 29454378 -91803152 + RMER10B LTR ERVL 196 398 0 8 809 264 226 189 21 chr12 29454697 29454792 -91802738 - MLT1-int LTR MaLR -245 1244 1134 8 809 254 225 106 0 chr12 29454929 29455089 -91802441 + (CTGTG)n Simple_repeat Simple_repeat 4 180 0 8 809 307 234 74 81 chr12 29455127 29455276 -91802254 - MLT1-int LTR MaLR -722 649 502 8 809 198 0 0 0 chr12 29456341 29456363 -91801167 + (T)n Simple_repeat Simple_repeat 1 22 0 8 809 322 281 0 12 chr12 29457279 29457362 -91800168 - ID4_ SINE ID 0 83 2 8 809 709 228 25 54 chr12 29458442 29458646 -91798884 - B3A SINE B2 0 198 1 8 809 5257 34 0 7 chr12 29461913 29462530 -91795000 - L1Md_F2 LINE L1 -2 6580 5968 8 809 198 0 0 0 chr12 29462555 29462577 -91794953 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 809 218 242 161 0 chr12 29462584 29462646 -91794884 - RSINE1 SINE B4 -30 135 64 8 809 298 256 0 60 chr12 29462699 29462782 -91794748 - ID4_ SINE ID -3 80 3 8 809 361 274 56 9 chr12 29462789 29462896 -91794634 - PB1D10 SINE Alu -5 112 1 8 809 236 206 86 12 chr12 29463569 29463731 -91793799 + (CTGTG)n Simple_repeat Simple_repeat 1 174 0 8 809 208 187 107 0 chr12 29463928 29464078 -91793452 + (CTCTG)n Simple_repeat Simple_repeat 2 167 0 8 809 483 184 59 39 chr12 29464327 29464480 -91793050 + Ricksha_c DNA MuDR 1836 1991 -57 8 809 197 33 33 0 chr12 29464575 29464605 -91792925 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 8 809 280 186 0 48 chr12 29465169 29465231 -91792299 - CR1_Mam LINE CR1 -698 1506 1448 8 809 399 285 179 40 chr12 29465674 29465926 -91791604 - MLT1A LTR MaLR -52 322 36 8 809 497 211 21 105 chr12 29466698 29466841 -91790689 - B1F SINE Alu 0 149 19 8 809 252 248 32 158 chr12 29466702 29466860 -91790670 + YREP_Mm Unknown Unknown 181 318 -1494 8 809 199 239 0 26 chr12 29467415 29467531 -91789999 + (TGG)n Simple_repeat Simple_repeat 1 113 0 8 809 524 146 0 10 chr12 29470676 29470780 -91786750 + CT-rich Low_complexity Low_complexity 3 105 0 8 809 242 95 0 23 chr12 29470930 29470973 -91786557 + (GGGAGA)n Simple_repeat Simple_repeat 4 45 0 8 809 326 23 0 23 chr12 29471740 29471784 -91785746 + (TATG)n Simple_repeat Simple_repeat 2 44 0 8 809 555 209 226 5 chr12 29474452 29474664 -91782866 - RCHARR1 DNA MER1_type 0 974 716 8 809 433 293 8 25 chr12 29474703 29474822 -91782708 + B1_Mur1 SINE Alu 33 149 0 8 809 339 200 43 0 chr12 29475047 29475117 -91782413 - RCHARR1 DNA MER1_type -249 725 653 8 809 592 253 115 0 chr12 29475481 29475655 -91781875 - B3A SINE B2 -4 194 1 8 809 1221 253 207 6 chr12 29475687 29476211 -91781319 - RCHARR1 DNA MER1_type -342 632 3 8 809 191 323 0 0 chr12 29476426 29476491 -91781039 - L2 LINE L2 -719 2700 2636 8 809 194 175 23 70 chr12 29478265 29478308 -91779222 + MER5A DNA MER1_type 117 157 -32 8 809 306 148 0 0 chr12 29478580 29478634 -91778896 + (GGGGA)n Simple_repeat Simple_repeat 4 57 0 8 809 4517 161 116 42 chr12 29479053 29479793 -91777737 + RLTR25B LTR ERVK 1 809 -219 8 809 519 121 0 0 chr12 29479793 29479892 -91777638 + (CA)n Simple_repeat Simple_repeat 2 100 0 8 809 4517 161 116 42 chr12 29479892 29480108 -91777422 + RLTR25B LTR ERVK 810 1027 -1 8 809 272 200 0 83 chr12 29480161 29480221 -91777309 - ORR1C2 LTR MaLR 0 384 330 8 809 2448 256 174 36 chr12 29480233 29480515 -91777015 - Lx6 LINE L1 -26 7434 7148 8 809 1977 142 3 71 chr12 29480515 29480865 -91776665 - ORR1A4 LTR MaLR 0 329 4 8 809 2448 256 174 36 chr12 29480865 29481163 -91776367 - Lx6 LINE L1 -313 7147 6763 8 809 180 0 0 0 chr12 29481163 29481183 -91776347 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 809 2448 273 91 32 chr12 29481183 29481663 -91775867 - Lx6 LINE L1 -698 6762 6045 8 809 1402 155 70 177 chr12 29481683 29481915 -91775615 - ORR1C2 LTR MaLR -41 343 169 8 809 216 0 0 0 chr12 29481915 29481939 -91775591 + (CAGC)n Simple_repeat Simple_repeat 3 26 0 8 809 1402 155 70 177 chr12 29481939 29482090 -91775440 - ORR1C2 LTR MaLR -216 168 1 8 809 1431 135 21 34 chr12 29482489 29482726 -91774804 - RLTR23 LTR ERV1 -7 423 190 8 809 378 122 351 0 chr12 29482748 29482822 -91774708 - RLTR23 LTR ERV1 -330 100 1 8 809 582 241 61 41 chr12 29482829 29482976 -91774554 - B1_Mur4 SINE Alu 0 150 1 8 809 879 245 13 78 chr12 29482980 29483006 -91774524 - B3 SINE B2 0 216 195 8 809 3487 54 15 152 chr12 29483006 29483599 -91773931 + RLTR1B LTR ERV1 1 512 0 8 809 879 245 13 78 chr12 29483599 29483710 -91773820 - B3 SINE B2 -22 194 96 8 809 1982 55 4 4 chr12 29483710 29483965 -91773565 + L1Md_F2 LINE L1 6328 6582 0 8 809 879 245 13 78 chr12 29483965 29484056 -91773474 - B3 SINE B2 -121 95 2 8 809 227 356 14 0 chr12 29484390 29484463 -91773067 + ID4 SINE ID 3 76 -7 8 809 231 191 0 0 chr12 29484491 29484554 -91772976 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 809 232 319 33 41 chr12 29486281 29486402 -91771128 + MTD LTR MaLR 294 413 -6 8 809 189 0 0 0 chr12 29487066 29487087 -91770443 + (T)n Simple_repeat Simple_repeat 1 21 0 8 809 351 0 0 0 chr12 29487485 29487524 -91770006 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 8 809 616 231 46 0 chr12 29487553 29487683 -91769847 - RSINE1 SINE B4 -7 158 23 8 809 1845 131 28 132 chr12 29487987 29488382 -91769148 + ORR1B1 LTR MaLR 41 394 0 8 809 182 356 46 46 chr12 29488575 29488684 -91768846 - MIRm SINE MIR -123 153 45 8 809 366 259 0 0 chr12 29489526 29489607 -91767923 + B3A SINE B2 39 119 -79 8 809 310 225 240 52 chr12 29489631 29489803 -91767727 - B4 SINE B4 -87 205 2 8 809 525 263 72 63 chr12 29490636 29490684 -91766846 - B3 SINE B2 -7 209 157 8 809 315 85 0 0 chr12 29490684 29490731 -91766799 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 809 544 249 34 53 chr12 29490731 29490889 -91766641 - B3A SINE B2 -60 156 1 8 810 477 0 0 0 chr12 29491680 29491733 -91765797 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 810 549 252 73 7 chr12 29491735 29491871 -91765659 - B3A SINE B2 -50 148 4 8 810 230 202 58 81 chr12 29492398 29492484 -91765046 + Charlie1b DNA MER1_type 245 328 -195 8 810 219 267 0 0 chr12 29493120 29493165 -91764365 + B1F2 SINE Alu 16 60 -89 8 810 405 242 24 24 chr12 29493422 29493545 -91763985 - RSINE1 SINE B4 -39 126 4 8 810 305 213 144 2 chr12 29494086 29494184 -91763346 - PB1D9 SINE Alu -21 127 20 8 810 224 265 0 0 chr12 29495038 29495087 -91762443 + CT-rich Low_complexity Low_complexity 4 52 0 8 810 459 237 21 0 chr12 29495092 29495189 -91762341 - MER70B LTR ERVL -189 389 291 8 810 561 103 16 33 chr12 29495246 29495367 -91762163 + GA-rich Low_complexity Low_complexity 3 121 0 8 810 333 337 60 49 chr12 29495401 29495585 -91761945 - MER70B LTR ERVL -313 265 80 8 810 585 266 67 56 chr12 29495847 29496042 -91761488 + B3A SINE B2 2 198 0 8 810 1000 280 73 7 chr12 29496520 29496627 -91760903 - MTEa LTR MaLR -85 294 185 8 810 1376 211 134 3 chr12 29496627 29496955 -91760575 + ORR1D1 LTR MaLR 4 374 0 8 810 1000 280 73 7 chr12 29496955 29497120 -91760410 - MTEa LTR MaLR -195 184 4 8 810 1472 169 73 17 chr12 29497130 29497419 -91760111 - MTD LTR MaLR -13 406 102 8 810 623 254 100 0 chr12 29497844 29497974 -91759556 - RSINE1 SINE B4 -16 149 7 8 810 2314 143 37 141 chr12 29499263 29499801 -91757729 - RLTR45 LTR ERVK 0 482 1 8 810 290 313 28 43 chr12 29502690 29502881 -91754649 + MIR3 SINE MIR 24 208 0 1 810 435 194 40 19 chr12 29503792 29504001 -91753529 - Lx9 LINE L1 -8 7636 7393 2 810 514 202 119 12 chr12 29504177 29504337 -91753193 - RCHARR1 DNA MER1_type -13 961 785 3 810 1226 55 7 0 chr12 29504339 29504485 -91753045 + B1_Mus2 SINE Alu 1 147 0 4 810 985 259 51 37 chr12 29504519 29504792 -91752738 - RCHARR1 DNA MER1_type -176 798 522 3 810 547 280 29 73 chr12 29504788 29504815 -91752715 - B2_Mm2 SINE B2 0 195 169 5 810 204 97 0 0 chr12 29504815 29504846 -91752684 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 810 882 222 52 7 chr12 29504846 29505022 -91752508 - B3A SINE B2 -17 181 1 5 810 285 166 319 23 chr12 29505022 29505149 -91752381 - RCHARR1 DNA MER1_type -434 540 374 3 810 228 347 94 34 chr12 29505278 29505427 -91752103 - RSINE1 SINE B4 0 165 8 7 810 755 138 28 17 chr12 29505452 29505629 -91751901 + CT-rich Low_complexity Low_complexity 2 180 0 8 810 1022 100 0 43 chr12 29505636 29505824 -91751706 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 9 810 576 0 0 0 chr12 29505954 29506018 -91751512 + (GGGGA)n Simple_repeat Simple_repeat 5 68 0 1 810 328 295 163 33 chr12 29506207 29506477 -91751053 + L1MA8 LINE L1 5967 6271 -20 1 810 339 289 46 12 chr12 29508659 29508896 -91748634 - L1M5 LINE L1 -870 5574 5315 1 810 1477 55 27 0 chr12 29508908 29509091 -91748439 + B2_Mm1t SINE B2 1 188 -5 1 810 222 37 0 0 chr12 29509252 29509279 -91748251 + (T)n Simple_repeat Simple_repeat 1 27 0 1 810 1193 62 0 0 chr12 29509279 29509425 -91748105 - B1_Mus2 SINE Alu 0 147 2 1 810 1066 102 14 0 chr12 29509883 29510030 -91747500 - B1_Mur4 SINE Alu -1 149 1 1 810 411 277 18 9 chr12 29510295 29510408 -91747122 - B3A SINE B2 -83 115 2 1 810 783 257 7 0 chr12 29510800 29510948 -91746582 - RSINE1 SINE B4 -14 151 3 1 810 214 220 19 29 chr12 29511094 29511197 -91746333 + CT-rich Low_complexity Low_complexity 4 105 0 1 810 244 349 37 9 chr12 29511200 29511307 -91746223 - PB1D7 SINE Alu -8 112 3 2 810 351 0 0 0 chr12 29511412 29511451 -91746079 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 810 487 225 45 9 chr12 29511451 29511563 -91745967 - RSINE1 SINE B4 -46 119 4 2 810 229 290 2 18 chr12 29511764 29511844 -91745686 - PB1D10 SINE Alu -47 80 2 2 810 311 242 44 0 chr12 29511928 29512019 -91745511 - HAL1 LINE L1 -2260 247 153 2 810 207 0 0 0 chr12 29512065 29512088 -91745442 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 810 631 234 55 0 chr12 29512670 29512798 -91744732 + ID_B1 SINE B4 90 224 0 2 810 1386 89 5 5 chr12 29515747 29515940 -91741590 - B2_Mm1a SINE B2 0 193 1 2 810 738 168 185 6 chr12 29516360 29516522 -91741008 - B3 SINE B2 -23 193 3 2 810 402 354 34 51 chr12 29518119 29518354 -91739176 - MLT1A0 LTR MaLR -5 360 130 2 810 467 254 174 14 chr12 29521246 29521458 -91736072 - MTEb LTR MaLR -38 341 96 3 810 438 238 30 70 chr12 29522167 29522354 -91735176 + MTEb LTR MaLR 100 275 -104 3 810 437 187 13 0 chr12 29522317 29522392 -91735138 - B1_Mur3 SINE Alu -73 76 1 3 810 229 229 100 0 chr12 29523124 29523194 -91734336 - L2 LINE L2 -573 2846 2770 3 810 234 266 15 59 chr12 29524104 29524172 -91733358 + B4 SINE B4 15 79 -213 3 810 885 206 102 37 chr12 29524111 29524298 -91733232 + B3 SINE B2 18 216 0 3 810 234 282 84 53 chr12 29524630 29524761 -91732769 + Tigger15a DNA TcMar 109 243 -472 3 810 286 250 59 59 chr12 29524951 29525087 -91732443 + L1M3 LINE L1 2894 3029 -3111 3 810 3052 69 8 8 chr12 29525361 29525757 -91731773 - MTA_Mm LTR MaLR 0 396 1 3 810 575 299 49 32 chr12 29527396 29527614 -91729916 - MTEa LTR MaLR 0 379 129 3 810 797 258 24 49 chr12 29527614 29527905 -91729625 - Lx9 LINE L1 -424 7220 6802 4 810 251 245 0 0 chr12 29527936 29527989 -91729541 - Lx9 LINE L1 -667 6977 6925 4 810 483 233 0 0 chr12 29528003 29528093 -91729437 + URR1B DNA MER1_type 3 92 -133 4 810 465 156 12 1 chr12 29528094 29528190 -91729340 + Lx4B LINE L1 5737 5868 -1190 4 810 372 73 0 0 chr12 29528272 29528327 -91729203 - RLTR10-int LTR ERVK -1930 57 3 4 810 2429 90 120 0 chr12 29528329 29528696 -91728834 - IAPLTR2a LTR ERVK 0 411 1 4 810 1339 194 27 0 chr12 29528989 29529247 -91728283 + Lx9 LINE L1 6612 6876 -768 4 810 424 247 74 34 chr12 29529247 29529286 -91728244 + CYRA11_Mm Unknown Y-chromosome 131 313 -304 4 810 852 131 22 0 chr12 29529286 29529423 -91728107 - URR1A DNA MER1_type -2 224 85 4 810 2261 227 58 49 chr12 29529423 29530010 -91727520 - L1_Rod LINE L1 -110 5737 5135 4 810 4313 99 45 45 chr12 29530010 29530761 -91726769 - RMER17A LTR ERVK 0 751 1 4 810 2261 227 58 49 chr12 29530761 29530973 -91726557 - L1_Rod LINE L1 -713 5134 4931 4 810 981 157 45 5 chr12 29531014 29531212 -91726318 + L1_Rod LINE L1 5274 5479 -368 5 810 1212 211 117 16 chr12 29531274 29531699 -91725831 - RMER4B LTR ERVK -9 457 1 5 810 365 316 40 101 chr12 29531942 29532220 -91725310 - MLT1A LTR MaLR -17 357 97 5 810 1157 48 14 20 chr12 29532975 29533123 -91724407 + B1_Mus2 SINE Alu 1 147 0 5 810 363 305 38 8 chr12 29534882 29535014 -91722516 + B1F1 SINE Alu 12 147 -2 5 810 247 217 159 0 chr12 29535021 29535090 -91722440 + ID4 SINE ID 2 81 -2 5 810 335 344 117 10 chr12 29535245 29535442 -91722088 - L1MC1 LINE L1 -279 6054 5837 5 810 187 287 58 87 chr12 29535899 29536002 -91721528 - L3 LINE CR1 -896 3593 3494 5 810 1179 28 35 0 chr12 29536339 29536481 -91721049 - B1_Mus1 SINE Alu -1 147 1 5 810 327 300 46 73 chr12 29536987 29537021 -91720509 + B1F1 SINE Alu 2 37 -112 5 810 1376 97 288 75 chr12 29537021 29537288 -91720242 - ORR1A3 LTR MaLR 0 326 3 6 810 327 300 46 73 chr12 29537288 29537404 -91720126 + B1F1 SINE Alu 38 148 -1 5 810 2754 288 121 50 chr12 29537538 29538411 -91719119 - MTE-int LTR MaLR -65 1515 604 6 810 5099 49 2 0 chr12 29538411 29539023 -91718507 + L1Md_T LINE L1 5970 6582 0 6 810 2754 288 121 50 chr12 29539023 29539270 -91718260 - MTE-int LTR MaLR -977 603 315 6 810 342 314 153 6 chr12 29539700 29539857 -91717673 - MLT1L LTR MaLR -88 522 343 6 810 243 0 0 0 chr12 29540500 29540527 -91717003 + (CTG)n Simple_repeat Simple_repeat 3 29 0 6 810 822 188 23 26 chr12 29541011 29541187 -91716343 + B3 SINE B2 44 216 0 6 810 246 230 52 39 chr12 29541805 29541882 -91715648 - ID4_ SINE ID -5 78 1 6 810 180 262 15 76 chr12 29542184 29542250 -91715280 - L4 LINE RTE -630 1399 1338 6 810 327 262 85 62 chr12 29546270 29546400 -91711130 + B4 SINE B4 3 135 -157 6 810 216 0 0 0 chr12 29547383 29547407 -91710123 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 6 810 442 325 42 0 chr12 29547411 29547531 -91709999 - RSINE1 SINE B4 -21 144 20 7 810 484 278 34 11 chr12 29548245 29548423 -91709107 + L1MC4a LINE L1 5681 5862 -2020 7 810 307 259 9 41 chr12 29548538 29548765 -91708765 + (TG)n Simple_repeat Simple_repeat 1 219 0 7 810 2217 159 78 13 chr12 29552811 29553206 -91704324 - MTC LTR MaLR 0 421 1 7 810 617 205 36 0 chr12 29554239 29554351 -91703179 + PB1D7 SINE Alu 4 119 -1 7 810 235 235 57 38 chr12 29554579 29554685 -91702845 - L1M5 LINE L1 -837 5309 5202 7 810 408 160 55 28 chr12 29556553 29556662 -91700868 + Lx5 LINE L1 6939 7050 0 7 810 22 0 0 0 chr12 29560132 29560154 -91697376 + AT_rich Low_complexity Low_complexity 1 22 0 7 810 339 265 19 75 chr12 29562096 29562202 -91695328 + PB1 SINE Alu 26 125 -2 7 810 252 242 0 46 chr12 29562202 29562267 -91695263 + GA-rich Low_complexity Low_complexity 1 62 0 7 810 252 208 0 0 chr12 29563319 29563367 -91694163 - tRNA-Ala-GCA tRNA tRNA -26 49 2 8 810 234 287 103 31 chr12 29563712 29563809 -91693721 - L2c LINE L2 -3 3384 3281 8 810 187 193 193 0 chr12 29564971 29565028 -91692502 + MIRm SINE MIR 96 163 -113 8 810 513 0 0 0 chr12 29565111 29565168 -91692362 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 810 661 234 0 8 chr12 29565662 29565787 -91691743 - B1_Mur1 SINE Alu -24 125 2 8 810 314 282 2 5 chr12 29566686 29566773 -91690757 + B4 SINE B4 6 90 -202 8 810 1774 279 97 12 chr12 29566788 29567416 -91690114 - Lx7 LINE L1 -1093 6603 5921 8 810 384 103 0 0 chr12 29567416 29567474 -91690056 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 810 1774 279 97 12 chr12 29567474 29567537 -91689993 - Lx7 LINE L1 -1776 5920 5853 8 810 1405 276 107 30 chr12 29567527 29568301 -91689229 + Lx7 LINE L1 6598 7460 -13 8 810 756 270 34 87 chr12 29568303 29568510 -91689020 + B4 SINE B4 80 275 -17 8 810 216 0 0 0 chr12 29568540 29568564 -91688966 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 810 506 16 0 16 chr12 29568616 29568680 -91688850 + (CATA)n Simple_repeat Simple_repeat 4 66 0 9 810 356 309 280 16 chr12 29571285 29571657 -91685873 - L1MEf LINE L1 -2186 3960 3491 9 810 729 0 0 0 chr12 29571666 29571747 -91685783 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 9 810 654 189 64 57 chr12 29571747 29571904 -91685626 - B3A SINE B2 -39 159 2 9 810 765 191 0 0 chr12 29571904 29572241 -91685289 + (CCCTG)n Simple_repeat Simple_repeat 1 337 0 9 810 399 327 90 19 chr12 29572307 29572675 -91684855 - L1MEf LINE L1 -5214 1028 635 9 810 567 299 73 15 chr12 29572676 29572880 -91684650 + MER20 DNA MER1_type 3 218 -1 9 810 324 377 24 18 chr12 29573099 29573264 -91684266 + MLT1B LTR MaLR 225 390 0 9 810 243 114 0 0 chr12 29573753 29573797 -91683733 + (T)n Simple_repeat Simple_repeat 1 44 0 9 810 247 236 30 59 chr12 29575401 29575536 -91681994 + (GTGTG)n Simple_repeat Simple_repeat 2 132 0 9 810 249 298 186 16 chr12 29575622 29575816 -91681714 + MIRb SINE MIR 5 231 -37 9 810 239 313 15 0 chr12 29576987 29577054 -91680476 + ID4 SINE ID 2 69 -14 1 810 913 269 0 5 chr12 29577879 29578081 -91679449 + Lx8 LINE L1 6618 6818 -655 1 810 447 311 124 37 chr12 29578120 29578557 -91678973 + Lx8 LINE L1 6990 7464 -9 1 810 323 208 0 105 chr12 29580057 29580143 -91677387 + B4 SINE B4 1 77 -215 1 810 773 200 31 18 chr12 29580268 29580431 -91677099 + B4 SINE B4 84 248 -44 1 810 504 32 0 0 chr12 29580454 29580516 -91677014 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 810 457 144 22 0 chr12 29580516 29580606 -91676924 + GA-rich Low_complexity Low_complexity 1 92 0 1 810 1754 202 32 0 chr12 29582362 29582527 -91675003 + ORR1D1 LTR MaLR 1 170 -204 1 810 588 14 0 0 chr12 29582527 29582596 -91674934 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 810 1754 202 32 0 chr12 29582596 29582771 -91674759 + ORR1D1 LTR MaLR 171 351 -23 1 810 2778 136 7 9 chr12 29582845 29583267 -91674263 - MTC LTR MaLR 0 421 1 1 810 442 236 141 29 chr12 29584625 29584795 -91672735 - MIRc SINE MIR -54 214 26 1 810 306 0 0 0 chr12 29585706 29585740 -91671790 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 810 751 302 65 18 chr12 29585878 29586107 -91671423 - MTE2b LTR MaLR -123 256 17 1 810 235 310 130 0 chr12 29586019 29586119 -91671411 - MT2A LTR ERVL -420 113 1 1 810 342 0 0 0 chr12 29586130 29586168 -91671362 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 810 424 274 22 45 chr12 29586202 29586336 -91671194 - MLT1A LTR MaLR -42 332 202 1 810 202 287 64 75 chr12 29586355 29586449 -91671081 - MIRb SINE MIR -132 136 44 1 810 3477 90 29 10 chr12 29586472 29586957 -91670573 + Lx LINE L1 6161 6654 0 1 810 205 211 0 0 chr12 29586957 29586995 -91670535 + A-rich Low_complexity Low_complexity 4 41 0 1 810 356 340 36 36 chr12 29587063 29587255 -91670275 + RMER4A LTR ERVK 22 213 -253 1 810 2170 201 45 14 chr12 29587385 29587828 -91669702 - Lx5 LINE L1 -22 7028 6572 1 810 252 0 0 0 chr12 29588431 29588459 -91669071 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 810 451 237 17 50 chr12 29589373 29589493 -91668037 + MTD LTR MaLR 3 118 -301 1 810 519 17 0 0 chr12 29589493 29589553 -91667977 + (TCC)n Simple_repeat Simple_repeat 3 62 0 1 810 261 0 0 0 chr12 29589555 29589584 -91667946 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 810 342 224 30 0 chr12 29589612 29589679 -91667851 - PB1D9 SINE Alu -51 69 1 1 810 1008 247 153 15 chr12 29589679 29589950 -91667580 + MTD LTR MaLR 100 419 0 1 810 225 328 56 72 chr12 29590599 29590724 -91666806 + MLT1A0 LTR MaLR 1 123 -242 1 810 312 306 12 0 chr12 29593087 29593172 -91664358 + L2 LINE L2 2793 2878 -541 1 810 3924 53 0 12 chr12 29594291 29594772 -91662758 - L1_Mus1 LINE L1 0 6567 6093 1 810 306 0 0 0 chr12 29595802 29595836 -91661694 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 810 928 47 23 0 chr12 29596103 29596232 -91661298 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 1 810 183 42 0 0 chr12 29596232 29596255 -91661275 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1 810 1097 53 0 0 chr12 29596255 29596388 -91661142 - B1_Mus2 SINE Alu -13 134 2 1 810 312 231 159 98 chr12 29596527 29596690 -91660840 - MIRm SINE MIR -103 173 1 1 810 781 277 167 4 chr12 29598051 29598290 -91659240 + B4 SINE B4 1 278 -14 1 810 534 16 0 0 chr12 29598344 29598407 -91659123 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 810 320 214 0 0 chr12 29598460 29598516 -91659014 + B3A SINE B2 5 60 -138 1 810 5784 82 19 5 chr12 29598844 29599624 -91657906 - L1_Mus4 LINE L1 -6 6630 5840 1 810 373 253 0 0 chr12 29599639 29599718 -91657812 - B1F SINE Alu -66 83 5 1 810 536 189 37 22 chr12 29600478 29600613 -91656917 + Lx9 LINE L1 7506 7642 -2 1 810 441 211 0 90 chr12 29601757 29601874 -91655656 - PB1D7 SINE Alu -38 111 7 1 810 256 326 0 44 chr12 29601794 29601884 -91655646 - B4A SINE B4 -125 167 82 1 810 437 130 87 39 chr12 29601886 29601990 -91655540 - RMER1B Other Other 0 1066 958 1 810 207 0 0 0 chr12 29601991 29602014 -91655516 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 810 820 148 94 0 chr12 29602014 29602163 -91655367 - RMER1B Other Other -148 918 756 1 810 1513 73 0 5 chr12 29602313 29602507 -91655023 - B2_Mm2 SINE B2 -1 194 2 1 810 201 121 0 0 chr12 29602533 29602566 -91654964 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 810 279 261 0 0 chr12 29602716 29602781 -91654749 - RMER15 LTR ERVL -108 467 403 1 810 791 304 28 28 chr12 29602782 29603137 -91654393 - Lx8 LINE L1 -207 7266 6912 1 810 4618 41 0 0 chr12 29603154 29603691 -91653839 - L1Md_F2 LINE L1 -12 6570 6034 1 810 917 234 44 10 chr12 29604161 29604364 -91653166 - B3 SINE B2 -5 211 2 1 810 741 271 5 5 chr12 29604439 29604602 -91652928 - ID_B1 SINE B4 -47 245 79 1 810 631 282 70 32 chr12 29604605 29604949 -91652581 - L1MB8 LINE L1 -6 6172 5816 1 810 907 195 78 16 chr12 29605041 29605234 -91652296 + URR1B DNA MER1_type 21 225 0 1 810 423 162 70 33 chr12 29605278 29605403 -91652127 - L1MB8 LINE L1 -2144 5851 5718 1 810 232 209 23 0 chr12 29605577 29605663 -91651867 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 810 547 300 54 84 chr12 29605685 29605733 -91651797 - B4 SINE B4 -2 290 242 1 810 618 60 0 0 chr12 29605733 29605816 -91651714 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1 810 4427 148 37 6 chr12 29605816 29606515 -91651015 - Lx5 LINE L1 -19 7031 6311 1 810 547 300 54 84 chr12 29606515 29606763 -91650767 - B4 SINE B4 -51 241 3 1 810 313 342 9 9 chr12 29606886 29607001 -91650529 - L1M4c LINE L1 -4559 1825 1711 1 810 22 0 0 0 chr12 29607148 29607170 -91650360 + AT_rich Low_complexity Low_complexity 1 22 0 1 810 642 26 0 0 chr12 29608278 29608354 -91649176 + (TCCC)n Simple_repeat Simple_repeat 3 78 0 1 810 227 337 124 31 chr12 29611309 29611344 -91646186 - B3 SINE B2 0 216 8 1 810 859 239 0 6 chr12 29611344 29611500 -91646030 - RSINE1 SINE B4 -2 163 9 1 810 305 158 12 35 chr12 29611629 29611714 -91645816 + (CATA)n Simple_repeat Simple_repeat 4 86 0 1 810 303 333 76 0 chr12 29612005 29612137 -91645393 - MER87 LTR ERV1 0 541 400 1 810 2228 279 48 21 chr12 29612794 29613754 -91643776 - L1M2 LINE L1 -1938 4907 3922 1 810 1637 309 75 40 chr12 29616714 29618764 -91638766 - L1M2 LINE L1 -2905 3940 1723 1 810 345 341 10 3 chr12 29619283 29619487 -91638043 + GA-rich Low_complexity Low_complexity 1 205 0 1 810 252 321 42 15 chr12 29619574 29619688 -91637842 + B1F SINE Alu 7 120 0 1 810 34 0 0 0 chr12 29619725 29619759 -91637771 + AT_rich Low_complexity Low_complexity 1 34 0 1 810 201 167 28 0 chr12 29619816 29619852 -91637678 + GA-rich Low_complexity Low_complexity 2 38 0 1 810 1115 22 7 0 chr12 29619895 29620033 -91637497 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 1 810 416 279 41 8 chr12 29620042 29620165 -91637365 - B3A SINE B2 -8 190 64 1 810 3994 39 19 0 chr12 29620713 29621179 -91636351 + MT2C_Mm LTR ERVL 1 475 0 1 810 1539 156 58 85 chr12 29621328 29621407 -91636123 - ORR1B1 LTR MaLR 0 394 338 1 810 3189 62 0 17 chr12 29621407 29621820 -91635710 - L1_Mus1 LINE L1 -1 6566 6161 1 810 1539 156 58 85 chr12 29621820 29622104 -91635426 - ORR1B1 LTR MaLR -57 337 41 1 101 545 230 188 5 chr12 29622156 29622348 -91635182 - B4A SINE B4 -57 235 9 1 811 266 167 176 27 chr12 29623350 29623424 -91634106 - B1F SINE Alu -58 91 7 1 811 351 200 435 37 chr12 29626170 29626252 -91631278 - B4A SINE B4 -60 232 1 1 811 354 241 0 12 chr12 29626252 29626336 -91631194 - B3 SINE B2 -133 83 1 1 811 23 33 0 0 chr12 29626336 29626366 -91631164 + AT_rich Low_complexity Low_complexity 1 30 0 1 811 359 225 25 59 chr12 29626539 29626683 -91630847 - PB1D7 SINE Alu 0 149 8 1 811 3061 87 38 16 chr12 29627831 29628277 -91629253 + L1_Mus4 LINE L1 6178 6633 -3 1 811 281 287 185 7 chr12 29628278 29628429 -91629101 + L1MC LINE L1 4150 4327 -1819 1 811 24 53 0 0 chr12 29628553 29628591 -91628939 + AT_rich Low_complexity Low_complexity 1 38 0 1 811 294 230 42 42 chr12 29628599 29628717 -91628813 + L1M5 LINE L1 4426 4543 -1603 1 811 180 0 0 0 chr12 29628717 29628737 -91628793 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 811 271 307 104 50 chr12 29628981 29629279 -91628251 - L1M4c LINE L1 -3885 2499 2186 1 811 394 305 163 26 chr12 29629578 29630019 -91627511 - L1M4c LINE L1 -4615 1769 1262 1 811 588 53 0 0 chr12 29630019 29630095 -91627435 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 811 308 24 24 0 chr12 29630095 29630135 -91627395 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 811 394 305 163 26 chr12 29630135 29630268 -91627262 - L1M4c LINE L1 -5123 1261 1117 1 811 180 0 0 0 chr12 29631044 29631064 -91626466 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 811 1120 72 0 0 chr12 29631064 29631203 -91626327 - B1_Mus1 SINE Alu -9 139 1 1 811 565 289 173 44 chr12 29631366 29631684 -91625846 + ORR1E LTR MaLR 1 359 0 1 811 1194 68 0 0 chr12 29632802 29632950 -91624580 - B1_Mus1 SINE Alu 0 148 1 1 811 590 335 42 11 chr12 29632950 29633140 -91624390 + B4 SINE B4 97 292 0 1 811 28 29 0 0 chr12 29634728 29634763 -91622767 + AT_rich Low_complexity Low_complexity 1 35 0 1 811 1253 221 55 44 chr12 29635264 29635629 -91621901 + MTE2a LTR MaLR 1 369 -10 1 811 651 230 91 18 chr12 29636302 29636523 -91621007 + MTE-int LTR MaLR 1207 1443 -137 1 811 317 306 93 0 chr12 29636535 29636643 -91620887 + ERVL-int LTR ERVL 5626 5743 -14 1 811 273 345 90 47 chr12 29636659 29636893 -91620637 + MTEa LTR MaLR 18 261 -118 1 811 1037 244 96 55 chr12 29638539 29638903 -91618627 - MTE2a LTR MaLR 0 379 1 1 811 959 290 28 28 chr12 29639121 29639405 -91618125 - B4A SINE B4 -4 288 5 1 811 495 0 0 0 chr12 29640390 29640445 -91617085 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 811 723 269 192 15 chr12 29640802 29641141 -91616389 - MTD LTR MaLR -20 399 1 2 811 216 0 0 0 chr12 29641988 29642012 -91615518 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 811 4499 219 51 17 chr12 29643109 29644122 -91613408 - Lx9 LINE L1 -166 7478 6431 2 811 1795 141 35 12 chr12 29644126 29644464 -91613066 - ORR1B1 LTR MaLR -8 386 41 2 811 282 206 82 118 chr12 29644473 29644583 -91612947 - Lx9 LINE L1 -1211 6433 6328 2 811 447 229 94 44 chr12 29645117 29645277 -91612253 - L1M LINE L1 -752 5428 5261 2 811 465 34 0 0 chr12 29645306 29645365 -91612165 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 2 811 182 293 26 26 chr12 29646249 29646326 -91611204 - MIR SINE MIR -126 136 60 2 811 219 320 69 23 chr12 29646462 29646593 -91610937 - MIRc SINE MIR -125 143 7 2 811 353 293 24 12 chr12 29650152 29650321 -91607209 + HAL1-2a_MD LINE L1 2342 2512 -512 2 811 219 114 0 0 chr12 29650344 29650379 -91607151 + (CCA)n Simple_repeat Simple_repeat 2 36 0 2 811 396 204 4 199 chr12 29650404 29650630 -91606900 + HAL1-2a_MD LINE L1 2344 2525 -499 2 811 240 333 0 0 chr12 29650630 29650708 -91606822 + (CACCAT)n Simple_repeat Simple_repeat 2 79 0 2 811 256 298 74 37 chr12 29650824 29650932 -91606598 - MIR SINE MIR -98 164 53 2 811 918 240 115 42 chr12 29652250 29652581 -91604949 + ORR1D2 LTR MaLR 11 365 -5 2 811 459 0 0 0 chr12 29652594 29652645 -91604885 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 811 219 261 247 11 chr12 29652645 29652730 -91604800 - PB1D10 SINE Alu -8 109 2 2 811 477 0 0 0 chr12 29653318 29653371 -91604159 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 811 495 0 0 0 chr12 29653371 29653425 -91604105 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 811 1001 218 10 5 chr12 29653695 29653898 -91603632 - B3 SINE B2 -11 205 2 2 811 460 264 138 81 chr12 29653995 29654255 -91603275 - B4A SINE B4 -16 276 2 2 811 250 367 79 58 chr12 29654283 29654523 -91603007 + ORR1E LTR MaLR 1 245 -114 2 811 408 300 107 0 chr12 29654890 29655030 -91602500 - MER45A DNA Tip100 -23 155 1 2 811 532 256 60 66 chr12 29655238 29655583 -91601947 - MTEb LTR MaLR -2 377 15 2 811 369 180 98 20 chr12 29657159 29657261 -91600269 - Lx8 LINE L1 -2 7471 7362 2 811 1336 246 3 56 chr12 29657272 29657612 -91599918 - MTE2b LTR MaLR -56 323 2 2 811 21 0 0 0 chr12 29657685 29657706 -91599824 + AT_rich Low_complexity Low_complexity 1 21 0 2 811 396 0 0 0 chr12 29657839 29657883 -91599647 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 811 587 314 5 29 chr12 29657918 29658128 -91599402 - Lx9 LINE L1 -206 7438 7234 2 811 1357 264 56 18 chr12 29658144 29658538 -91598992 - Lx8 LINE L1 -96 7377 6969 2 811 23 54 0 0 chr12 29658571 29658608 -91598922 + AT_rich Low_complexity Low_complexity 1 37 0 2 811 453 36 0 0 chr12 29658839 29658894 -91598636 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 2 811 592 248 7 21 chr12 29659153 29659293 -91598237 + B1F SINE Alu 5 142 -7 2 811 222 282 18 35 chr12 29660045 29660159 -91597371 + G-rich Low_complexity Low_complexity 5 116 0 2 811 195 250 0 0 chr12 29660584 29660636 -91596894 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 811 550 288 101 11 chr12 29661335 29661514 -91596016 + ID_B1 SINE B4 30 224 0 2 811 317 337 17 68 chr12 29661964 29662096 -91595434 + PB1D7 SINE Alu 1 118 -31 2 811 450 289 154 5 chr12 29662096 29662284 -91595246 + ID_B1 SINE B4 5 220 -4 2 811 217 342 18 131 chr12 29662284 29662319 -91595211 + B1F1 SINE Alu 119 149 0 2 811 1274 216 19 97 chr12 29664826 29665237 -91592293 - MTEa LTR MaLR 0 379 1 2 811 297 212 35 0 chr12 29665613 29665698 -91591832 + (TTAGGG)n Simple_repeat Simple_repeat 5 92 0 2 811 429 258 162 52 chr12 29666483 29666743 -91590787 + B4 SINE B4 2 268 -24 2 811 528 91 0 0 chr12 29666754 29666842 -91590688 + (TC)n Simple_repeat Simple_repeat 2 89 0 2 811 216 0 0 0 chr12 29666842 29666866 -91590664 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 811 567 0 0 0 chr12 29666866 29666928 -91590602 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 811 26 0 0 0 chr12 29667267 29667293 -91590237 + AT_rich Low_complexity Low_complexity 1 26 0 2 811 505 290 34 5 chr12 29667327 29667535 -91589995 + L1M2 LINE L1 5015 5228 -915 2 811 387 307 70 70 chr12 29667806 29668076 -91589454 - B4A SINE B4 -16 276 7 2 811 4814 50 5 0 chr12 29668300 29668882 -91588648 - L1Md_F2 LINE L1 -2 6580 5996 2 811 236 356 114 17 chr12 29669217 29669514 -91588016 + L2 LINE L2 2614 2939 -480 2 811 399 289 104 23 chr12 29670383 29670642 -91586888 - MLT1C LTR MaLR -137 330 51 2 811 334 298 51 55 chr12 29670681 29670898 -91586632 - L1MD LINE L1 -583 5659 5444 2 811 492 18 0 0 chr12 29671642 29671699 -91585831 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 811 204 40 0 0 chr12 29671892 29671917 -91585613 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 811 456 19 0 0 chr12 29672042 29672095 -91585435 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 811 701 297 100 16 chr12 29672100 29672231 -91585299 - B4 SINE B4 -18 274 145 2 811 441 36 0 0 chr12 29672231 29672286 -91585244 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 2 811 701 297 100 16 chr12 29672286 29672404 -91585126 - B4 SINE B4 -148 144 6 2 811 2673 122 181 63 chr12 29675131 29675682 -91581848 + RLTR18 LTR ERVK 1 616 0 2 811 402 231 224 30 chr12 29676178 29676343 -91581187 - B3A SINE B2 -1 197 1 2 811 228 333 0 22 chr12 29677059 29677074 -91580456 - BC1_Mm scRNA scRNA -60 92 3 2 811 353 227 13 26 chr12 29677074 29677151 -91580379 - ID SINE ID -146 78 3 2 811 2681 145 0 25 chr12 29677614 29678046 -91579484 - MTC LTR MaLR 0 421 1 2 811 231 290 74 84 chr12 29678263 29678466 -91579064 - L1M5 LINE L1 -894 5252 5052 2 811 220 121 48 65 chr12 29678629 29678691 -91578839 + T-rich Low_complexity Low_complexity 2 62 0 2 811 439 262 96 51 chr12 29678787 29678944 -91578586 - RSINE1 SINE B4 0 165 2 2 811 226 226 15 61 chr12 29678944 29679010 -91578520 - L1M5 LINE L1 -1373 4773 4711 2 811 402 157 37 42 chr12 29679227 29679329 -91578201 + ORR1C2 LTR MaLR 1 68 -316 2 811 304 375 86 20 chr12 29679502 29679910 -91577620 - L1MC4 LINE L1 -627 7415 6981 2 811 429 108 25 0 chr12 29680273 29680354 -91577176 - ORR1C2 LTR MaLR -303 91 5 2 811 213 178 0 0 chr12 29681575 29681620 -91575910 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 811 353 234 0 0 chr12 29685561 29685638 -91571892 + L1_Rod LINE L1 5707 5783 -64 2 811 199 232 21 21 chr12 29685682 29685779 -91571751 + (TATATG)n Simple_repeat Simple_repeat 5 101 0 2 811 316 307 0 11 chr12 29685779 29686054 -91571476 + (CA)n Simple_repeat Simple_repeat 1 271 0 2 811 31 68 0 0 chr12 29686132 29686191 -91571339 + AT_rich Low_complexity Low_complexity 1 59 0 2 811 21 36 0 0 chr12 29686439 29686467 -91571063 + AT_rich Low_complexity Low_complexity 1 28 0 2 811 2244 103 14 0 chr12 29686750 29687109 -91570421 + MTC LTR MaLR 1 364 -57 2 811 329 105 35 87 chr12 29687113 29687228 -91570302 + CT-rich Low_complexity Low_complexity 3 111 0 2 811 242 219 62 15 chr12 29687228 29687293 -91570237 + MTC LTR MaLR 352 419 0 2 811 261 0 0 0 chr12 29687705 29687734 -91569796 + (T)n Simple_repeat Simple_repeat 1 29 0 2 811 21 36 0 0 chr12 29688111 29688139 -91569391 + AT_rich Low_complexity Low_complexity 1 28 0 2 811 327 270 117 16 chr12 29688228 29688356 -91569174 + B4A SINE B4 2 142 -150 2 811 1860 152 85 32 chr12 29688356 29688758 -91568772 + RMER10A LTR ERVL 1 423 -19 2 811 386 216 0 13 chr12 29688776 29688851 -91568679 + B4A SINE B4 157 230 -62 2 811 596 230 7 7 chr12 29688853 29688993 -91568537 + RSINE1 SINE B4 3 142 -23 2 811 206 245 0 0 chr12 29690346 29690399 -91567131 + T-rich Low_complexity Low_complexity 1 53 0 2 811 390 282 130 76 chr12 29691105 29691381 -91566149 + MLT1E3 LTR MaLR 327 617 -7 2 811 270 179 0 0 chr12 29691426 29691482 -91566048 + CT-rich Low_complexity Low_complexity 4 59 0 2 811 1131 251 142 24 chr12 29691867 29692206 -91565324 - MTE2a LTR MaLR 0 379 1 2 811 1433 231 49 3 chr12 29692716 29693064 -91564466 + MTEa LTR MaLR 1 364 -15 2 811 601 328 43 22 chr12 29694012 29694215 -91563315 - B4A SINE B4 -9 283 74 2 811 456 19 0 0 chr12 29694215 29694268 -91563262 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 811 601 328 43 22 chr12 29694268 29694341 -91563189 - B4A SINE B4 -219 73 1 2 811 22 0 0 0 chr12 29694516 29694538 -91562992 + AT_rich Low_complexity Low_complexity 1 22 0 2 811 194 238 0 0 chr12 29695936 29695978 -91561552 + MIRb SINE MIR 155 196 -72 2 811 194 297 62 0 chr12 29695945 29696009 -91561521 + MIRc SINE MIR 170 237 -31 2 811 205 324 14 0 chr12 29696354 29696428 -91561102 + (CCCA)n Simple_repeat Simple_repeat 1 75 0 2 811 306 0 0 0 chr12 29696465 29696502 -91561028 - U2 snRNA snRNA -151 37 1 2 811 318 326 53 48 chr12 29696511 29696765 -91560765 + MLT2B4 LTR ERVL 5 270 -284 2 811 222 37 0 0 chr12 29698286 29698313 -91559217 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 811 438 20 0 0 chr12 29698794 29698845 -91558685 + (TATG)n Simple_repeat Simple_repeat 4 54 0 2 811 773 193 0 0 chr12 29698848 29698983 -91558547 - B3 SINE B2 -80 136 2 2 811 424 290 298 44 chr12 29698983 29699312 -91558218 - L1M3 LINE L1 -1668 4472 4060 2 811 4363 153 19 25 chr12 29701522 29702320 -91555210 - RMER13B LTR ERVK -115 793 1 2 811 24 0 0 0 chr12 29703273 29703297 -91554233 + AT_rich Low_complexity Low_complexity 1 24 0 2 811 240 86 0 0 chr12 29703371 29703406 -91554124 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 811 759 270 38 99 chr12 29704190 29704585 -91552945 + MTE2a LTR MaLR 5 375 -4 2 811 192 40 0 0 chr12 29705234 29705259 -91552271 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 811 468 296 178 9 chr12 29706182 29706407 -91551123 + RMER15 LTR ERVL 299 561 -14 3 811 418 257 118 26 chr12 29707198 29707350 -91550180 - L1MA7 LINE L1 -14 6277 6112 3 811 1338 259 57 10 chr12 29707438 29707825 -91549705 + MTD LTR MaLR 1 405 -14 3 811 2004 274 68 69 chr12 29707840 29708843 -91548687 - L1MA7 LINE L1 -231 6060 5028 3 811 567 0 0 0 chr12 29708843 29708906 -91548624 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 811 708 266 43 160 chr12 29708906 29709084 -91548446 - L1MA7 LINE L1 -1103 5037 4885 3 811 519 246 85 6 chr12 29709105 29709281 -91548249 + L1M3 LINE L1 3759 3948 -2192 3 811 240 128 0 0 chr12 29709517 29709556 -91547974 - ID_B1 SINE B4 -53 171 133 3 811 1158 231 75 105 chr12 29709556 29709918 -91547612 + MTE2a LTR MaLR 1 351 -28 3 811 4147 72 4 2 chr12 29709926 29710470 -91547060 - L1_Mus3 LINE L1 0 6638 6094 3 811 1205 91 0 6 chr12 29710470 29710636 -91546894 + L1_Mus3 LINE L1 5936 6100 -538 3 811 502 311 7 0 chr12 29710677 29710812 -91546718 - ID_B1 SINE B4 -87 137 2 3 811 4742 4 0 0 chr12 29711417 29711932 -91545598 - L1Md_A LINE L1 0 6582 6068 3 811 1217 116 182 0 chr12 29711932 29712174 -91545356 - ORR1A3 LTR MaLR -40 286 1 3 811 273 318 18 9 chr12 29713191 29713302 -91544228 + MIRc SINE MIR 22 133 -135 3 811 508 247 6 110 chr12 29713553 29713726 -91543804 + B4 SINE B4 2 156 -136 3 811 296 267 56 28 chr12 29713970 29714078 -91543452 + B1F1 SINE Alu 13 123 -26 3 811 615 14 0 0 chr12 29714776 29714848 -91542682 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 811 347 41 20 0 chr12 29715312 29715361 -91542169 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 811 720 0 0 0 chr12 29716286 29716366 -91541164 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 811 626 321 64 8 chr12 29717008 29717272 -91540258 + MLT1A0 LTR MaLR 81 359 -6 3 811 288 259 97 34 chr12 29717648 29717824 -91539706 - L1M5 LINE L1 -355 5818 5632 3 811 251 337 36 0 chr12 29717929 29718012 -91539518 - PB1D10 SINE Alu -19 98 13 3 811 249 300 11 32 chr12 29718065 29718158 -91539372 - L1M3 LINE L1 -713 5470 5380 3 811 3317 114 20 16 chr12 29718168 29718675 -91538855 - Lx LINE L1 -4 6650 6142 3 811 664 224 98 22 chr12 29718694 29718877 -91538653 - B3A SINE B2 -1 197 1 3 811 1100 163 113 5 chr12 29719321 29719525 -91538005 - URR1A DNA MER1_type 0 226 1 3 811 438 224 10 30 chr12 29720058 29720071 -91537459 - AmnSINE1 SINE SINE -476 99 1 3 811 446 216 23 0 chr12 29720071 29720159 -91537371 - 5S rRNA rRNA -31 90 1 3 811 748 175 0 42 chr12 29720572 29720715 -91536815 + B1_Mus1 SINE Alu 2 138 -10 3 811 702 98 0 0 chr12 29720767 29720889 -91536641 + (TC)n Simple_repeat Simple_repeat 1 122 0 3 811 306 0 0 0 chr12 29720889 29720923 -91536607 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 811 1287 50 0 22 chr12 29721142 29721325 -91536205 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 811 2505 77 0 0 chr12 29721530 29721854 -91535676 - L1_Mus1 LINE L1 0 6567 6244 3 811 305 310 130 15 chr12 29722112 29722374 -91535156 - L1MEg LINE L1 -3610 2536 2245 3 811 389 329 98 31 chr12 29722481 29723164 -91534366 - L1MEg LINE L1 -4169 2073 1345 3 811 290 286 36 0 chr12 29723701 29723785 -91533745 - ID SINE ID -136 88 2 3 811 541 227 18 0 chr12 29723806 29723916 -91533614 - ID_B1 SINE B4 0 224 113 3 811 1275 94 16 16 chr12 29725559 29725742 -91531788 + B2_Mm2 SINE B2 4 186 -9 3 811 1127 187 54 5 chr12 29725754 29725958 -91531572 + B3 SINE B2 2 215 -1 3 811 458 247 26 100 chr12 29726919 29727093 -91530437 + MT2B LTR ERVL 106 264 -320 3 811 1099 79 0 0 chr12 29726988 29727127 -91530403 + B1_Mus1 SINE Alu 9 147 -1 3 811 352 29 27 55 chr12 29727131 29727204 -91530326 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 3 811 306 0 0 0 chr12 29728307 29728341 -91529189 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 811 189 141 62 37 chr12 29728547 29728628 -91528902 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 3 811 761 89 60 0 chr12 29728643 29728811 -91528719 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 3 811 2717 156 117 11 chr12 29728873 29729393 -91528137 - RMER15 LTR ERVL 0 575 1 3 811 655 298 85 25 chr12 29729764 29730046 -91527484 + RMER15 LTR ERVL 273 571 -4 3 811 1287 311 92 24 chr12 29730349 29730954 -91526576 - Lx8 LINE L1 -19 7454 6809 3 811 297 305 22 37 chr12 29731519 29731655 -91525875 - L1MCa LINE L1 -5423 1085 952 3 811 400 252 42 21 chr12 29731792 29731934 -91525596 - L1MA4 LINE L1 -367 5933 5789 3 811 281 165 21 0 chr12 29731991 29732056 -91525474 - Lx8 LINE L1 -1727 5746 5681 3 811 704 287 0 31 chr12 29734067 29734290 -91523240 - HAL1 LINE L1 -1559 948 733 3 811 494 294 82 9 chr12 29736193 29736413 -91521117 - MER45B DNA Tip100 -9 1031 796 3 811 2317 23 0 0 chr12 29736428 29736690 -91520840 + L1Md_T LINE L1 5325 5586 -297 3 811 8694 29 0 0 chr12 29736690 29737686 -91519844 + L1Md_T LINE L1 5587 6582 0 3 811 323 390 0 0 chr12 29739703 29739857 -91517673 + (TG)n Simple_repeat Simple_repeat 2 155 0 3 811 810 264 171 49 chr12 29740123 29740473 -91517057 - MTD LTR MaLR -1 418 26 3 811 486 0 0 0 chr12 29741719 29741773 -91515757 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 811 326 340 71 7 chr12 29743553 29743707 -91513823 + L1MCa LINE L1 709 872 -5173 3 811 282 327 108 8 chr12 29743955 29744305 -91513225 + L1MCa LINE L1 1058 1474 -5277 3 811 478 333 49 0 chr12 29744401 29744665 -91512865 + L1MCa LINE L1 1728 2004 -4747 3 811 326 208 39 0 chr12 29745604 29745681 -91511849 + Kanga11a DNA Tc2 891 970 0 3 811 30 0 0 0 chr12 29745814 29745844 -91511686 + AT_rich Low_complexity Low_complexity 1 30 0 3 811 326 260 47 112 chr12 29745844 29746013 -91511517 - HAL1-3A_ME LINE L1 -725 2133 1976 3 811 354 204 0 0 chr12 29746027 29746130 -91511400 + (TG)n Simple_repeat Simple_repeat 1 103 0 3 811 430 217 234 6 chr12 29746130 29746297 -91511233 - B3 SINE B2 -11 205 1 3 811 497 246 92 0 chr12 29746307 29746437 -91511093 - B1F SINE Alu -7 142 1 3 811 255 61 0 0 chr12 29748190 29748223 -91509307 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 811 705 248 10 44 chr12 29748714 29748917 -91508613 + B3A SINE B2 3 198 0 3 811 484 312 58 64 chr12 29749599 29750082 -91507448 - L1M3 LINE L1 -883 5257 4778 3 811 21 89 0 0 chr12 29750084 29750140 -91507390 + AT_rich Low_complexity Low_complexity 1 56 0 3 811 180 0 0 0 chr12 29750298 29750318 -91507212 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 811 207 0 0 0 chr12 29750318 29750340 -91507190 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 811 201 195 0 0 chr12 29750501 29750542 -91506988 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 811 243 61 0 0 chr12 29750980 29751013 -91506517 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 3 811 4253 191 28 40 chr12 29751326 29752236 -91505294 - RMER13B LTR ERVK -9 899 1 3 812 1047 184 32 0 chr12 29753568 29753753 -91503777 - B3 SINE B2 -24 192 2 3 812 230 219 0 0 chr12 29754824 29754865 -91502665 + MIR SINE MIR 220 260 -2 3 812 317 303 156 52 chr12 29758345 29758557 -91498973 - MIRb SINE MIR -16 252 19 3 812 187 182 35 35 chr12 29758927 29758984 -91498546 - L3 LINE CR1 -4266 223 167 3 812 409 263 29 7 chr12 29761469 29761607 -91495923 + Lx5 LINE L1 6910 7050 0 3 812 724 202 197 61 chr12 29761794 29762127 -91495403 - MTD LTR MaLR -2 419 18 3 812 645 49 0 0 chr12 29762709 29762790 -91494740 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 3 812 203 136 0 43 chr12 29762791 29762837 -91494693 + CT-rich Low_complexity Low_complexity 3 46 0 3 812 246 359 30 60 chr12 29762860 29763026 -91494504 + RMER5 LTR ERV1 1 161 -373 3 812 1371 172 41 166 chr12 29763039 29763271 -91494259 - ORR1C2 LTR MaLR 0 384 180 3 812 291 85 0 0 chr12 29763271 29763318 -91494212 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 812 1170 95 0 0 chr12 29763327 29763506 -91494024 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 812 1371 172 41 166 chr12 29763506 29763654 -91493876 - ORR1C2 LTR MaLR -213 171 43 3 812 810 273 65 8 chr12 29763655 29763917 -91493613 + RMER5 LTR ERV1 258 534 0 3 812 534 266 131 55 chr12 29764249 29764448 -91493082 - B3 SINE B2 0 216 3 3 812 318 323 16 16 chr12 29764602 29764728 -91492802 - MTD LTR MaLR -293 126 1 3 812 210 170 31 31 chr12 29765197 29765294 -91492236 + (TATG)n Simple_repeat Simple_repeat 4 100 0 3 812 289 190 51 0 chr12 29765333 29765412 -91492118 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 812 867 320 49 12 chr12 29765438 29765685 -91491845 - B4A SINE B4 0 292 37 3 812 376 324 100 48 chr12 29765707 29765996 -91491534 + L1ME1 LINE L1 3893 4196 -1950 3 812 473 0 18 0 chr12 29766006 29766063 -91491467 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3 812 593 242 6 120 chr12 29766072 29766255 -91491275 - RSINE1 SINE B4 0 165 4 3 812 548 157 206 40 chr12 29766303 29766417 -91491113 + B1_Mm SINE Alu 1 137 -10 3 812 441 0 0 0 chr12 29766417 29766466 -91491064 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 812 548 157 206 40 chr12 29766466 29766477 -91491053 + B1_Mm SINE Alu 138 147 0 3 812 984 221 19 5 chr12 29766571 29766780 -91490750 - B3 SINE B2 -2 214 3 3 812 307 316 82 38 chr12 29767237 29767395 -91490135 + L1ME1 LINE L1 5841 6005 -174 3 812 241 102 0 71 chr12 29768858 29768900 -91488630 - ORR1E LTR MaLR -145 214 176 3 812 364 305 64 0 chr12 29769543 29769684 -91487846 - L1MA5 LINE L1 0 6300 6151 3 812 1313 254 96 72 chr12 29770132 29770370 -91487160 - L1MA5 LINE L1 -450 5850 5598 3 812 369 0 0 0 chr12 29770370 29770411 -91487119 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 3 812 1313 254 96 72 chr12 29770411 29770753 -91486777 - L1MA5 LINE L1 -703 5597 5256 3 812 255 245 134 104 chr12 29770784 29770948 -91486582 - MTEb LTR MaLR -10 369 201 3 812 273 284 0 15 chr12 29770950 29771018 -91486512 + GA-rich Low_complexity Low_complexity 3 69 0 3 812 388 295 53 80 chr12 29771018 29771169 -91486361 - MTEb LTR MaLR -164 215 69 3 812 710 239 156 22 chr12 29771170 29771439 -91486091 - L1M2c LINE L1 -2058 4784 4480 3 812 680 256 121 89 chr12 29771487 29772099 -91485431 - L1M2c LINE L1 -3384 3464 2837 3 812 383 269 18 42 chr12 29772177 29772223 -91485307 - L1M2c LINE L1 -4774 2075 2036 3 812 2036 116 99 36 chr12 29772223 29772608 -91484922 + RLTR9E LTR ERVK 1 409 0 3 812 408 280 35 30 chr12 29772608 29772876 -91484654 - L1M2c LINE L1 -4793 2056 1776 3 812 1191 179 32 5 chr12 29772902 29773121 -91484409 - URR1A DNA MER1_type 0 226 2 3 812 802 247 0 51 chr12 29773261 29773457 -91484073 - B3A SINE B2 -2 196 11 3 812 844 162 13 33 chr12 29773486 29773639 -91483891 - B1_Mur4 SINE Alu 0 150 1 4 812 1012 246 14 52 chr12 29776656 29776947 -91480583 + B4 SINE B4 1 280 -12 4 812 864 250 50 111 chr12 29778198 29778576 -91478954 + ORR1E LTR MaLR 1 355 -4 4 812 724 208 0 0 chr12 29779030 29779150 -91478380 + B1_Mur1 SINE Alu 18 137 -12 4 812 260 242 28 92 chr12 29779512 29779621 -91477909 + RLTR14 LTR ERV1 262 363 -19 4 812 286 290 0 0 chr12 29781534 29781596 -91475934 - ID4_ SINE ID 0 83 22 4 812 2184 168 22 41 chr12 29782011 29782426 -91475104 - MTB_Mm LTR MaLR 0 407 1 4 812 577 222 0 27 chr12 29782780 29782891 -91474639 - PB1D9 SINE Alu -8 112 5 4 812 417 148 0 0 chr12 29783211 29783292 -91474238 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 812 354 336 92 126 chr12 29783761 29784285 -91473245 + MER44B DNA MER2_type 31 536 -14 4 812 189 0 0 0 chr12 29784359 29784380 -91473150 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 812 411 160 0 0 chr12 29785705 29785780 -91471750 + CT-rich Low_complexity Low_complexity 2 76 0 4 812 1685 206 103 0 chr12 29786247 29786586 -91470944 + MT2A LTR ERVL 1 374 -159 4 812 189 0 0 0 chr12 29786677 29786698 -91470832 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 812 1494 230 65 16 chr12 29786750 29787134 -91470396 + MERVL_2A-int LTR ERVL 418 820 -4941 4 812 1536 211 74 28 chr12 29787134 29787460 -91470070 + ORR1D2 LTR MaLR 21 361 -9 4 812 255 361 179 40 chr12 29788762 29788865 -91468665 - L2a LINE L2 -5 3421 3330 4 812 438 20 0 0 chr12 29788865 29788916 -91468614 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 812 255 361 179 40 chr12 29788916 29789236 -91468294 - L2a LINE L2 -97 3329 2940 4 812 724 197 109 19 chr12 29790031 29790221 -91467309 - MTD LTR MaLR -21 398 205 4 812 1040 40 0 0 chr12 29790288 29790414 -91467116 - MT-int LTR MaLR -697 401 276 4 812 780 242 25 0 chr12 29790429 29790590 -91466940 - ID_B1 SINE B4 -57 167 3 4 812 351 0 0 0 chr12 29791358 29791397 -91466133 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 812 267 31 0 0 chr12 29791397 29791428 -91466102 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 812 297 316 64 32 chr12 29793287 29793444 -91464086 + RMER15 LTR ERVL 346 507 -68 4 812 240 35 0 0 chr12 29793534 29793563 -91463967 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 4 812 281 264 81 45 chr12 29793839 29793950 -91463580 + MIR SINE MIR 60 174 -88 4 812 1769 155 125 0 chr12 29794815 29794965 -91462565 + ORR1C1 LTR MaLR 1 166 -212 4 812 1086 86 0 0 chr12 29794965 29795116 -91462414 + (TCTCCC)n Simple_repeat Simple_repeat 1 151 0 4 812 1769 155 125 0 chr12 29795116 29795301 -91462229 + ORR1C1 LTR MaLR 167 377 -1 4 812 216 264 122 33 chr12 29796032 29796193 -91461337 + MIR3 SINE MIR 8 176 -32 4 812 183 385 65 20 chr12 29797247 29797446 -91460084 - L2 LINE L2 -1009 2410 2203 4 812 26 64 0 0 chr12 29798069 29798116 -91459414 + AT_rich Low_complexity Low_complexity 1 47 0 4 812 2701 210 61 3 chr12 29798116 29798704 -91458826 - Lx2B LINE L1 -1 6999 6378 4 812 401 35 18 0 chr12 29798704 29798761 -91458769 + L1_Mur1 LINE L1 3558 3615 -2271 4 812 186 118 0 0 chr12 29799411 29799445 -91458085 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 812 1112 285 11 7 chr12 29799451 29799737 -91457793 - B4 SINE B4 -2 290 4 4 812 22 0 0 0 chr12 29799750 29799772 -91457758 + AT_rich Low_complexity Low_complexity 1 22 0 4 812 324 376 87 36 chr12 29800542 29800738 -91456792 - LTR33B LTR ERVL -139 364 159 4 812 299 237 146 11 chr12 29801523 29801621 -91455909 - PB1D10 SINE Alu -23 124 19 4 812 3198 276 66 25 chr12 29801743 29802821 -91454709 + Lx9 LINE L1 6501 7622 -22 4 812 260 175 0 16 chr12 29804407 29804471 -91453059 + GA-rich Low_complexity Low_complexity 3 65 0 4 812 283 359 0 0 chr12 29804738 29804816 -91452714 + MER2B DNA MER2_type 238 315 -21 4 812 225 358 37 0 chr12 29804885 29804966 -91452564 + Tigger7 DNA MER2_type 2404 2487 -4 4 812 223 338 0 0 chr12 29807125 29807196 -91450334 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 812 273 302 12 0 chr12 29807412 29807498 -91450032 + GA-rich Low_complexity Low_complexity 5 91 0 4 812 240 188 0 0 chr12 29808099 29808147 -91449383 + (GGGTG)n Simple_repeat Simple_repeat 4 51 0 4 812 231 316 28 22 chr12 29808229 29808407 -91449123 + (TATG)n Simple_repeat Simple_repeat 1 179 0 4 812 200 309 22 39 chr12 29808452 29808545 -91448985 + (TATG)n Simple_repeat Simple_repeat 1 91 0 4 812 188 111 0 27 chr12 29808545 29808582 -91448948 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 812 200 309 22 39 chr12 29808582 29808670 -91448860 + (TATG)n Simple_repeat Simple_repeat 1 88 0 4 812 298 269 33 33 chr12 29811335 29811485 -91446045 + (CATA)n Simple_repeat Simple_repeat 1 150 0 4 812 1030 305 85 11 chr12 29812285 29812663 -91444867 - RMER15-int LTR ERVL -3384 1615 1210 4 812 531 319 22 6 chr12 29813096 29813276 -91444254 - RMER15-int LTR ERVL -4814 185 3 4 812 589 294 53 57 chr12 29813288 29813497 -91444033 - RMER15 LTR ERVL -16 559 352 4 812 558 0 0 0 chr12 29815945 29816007 -91441523 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 812 180 0 0 0 chr12 29816010 29816030 -91441500 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 812 423 0 0 0 chr12 29816459 29816506 -91441024 + (GGATG)n Simple_repeat Simple_repeat 1 47 0 4 812 456 19 0 0 chr12 29816680 29816733 -91440797 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 812 693 124 0 0 chr12 29816958 29817087 -91440443 + (TC)n Simple_repeat Simple_repeat 1 129 0 4 812 314 353 7 68 chr12 29817087 29817233 -91440297 - RMER12 LTR ERVK -464 858 722 4 812 231 235 0 0 chr12 29817653 29817704 -91439826 - ID4_ SINE ID -17 66 16 4 812 388 283 62 8 chr12 29817872 29818000 -91439530 - B1F1 SINE Alu -14 135 1 4 812 360 190 0 0 chr12 29818158 29818237 -91439293 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 4 812 526 276 71 71 chr12 29818262 29818445 -91439085 - MLT1A1 LTR MaLR -13 395 213 4 812 418 347 99 40 chr12 29818558 29818933 -91438597 - MLT1A0-int LTR MaLR 0 1735 1339 4 812 273 258 0 0 chr12 29818941 29819034 -91438496 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 812 1413 305 153 47 chr12 29819333 29820085 -91437445 - MLT1A0-int LTR MaLR -902 833 2 4 812 647 337 60 24 chr12 29820085 29820331 -91437199 - MLT1A0 LTR MaLR -11 354 100 4 812 327 104 0 0 chr12 29821636 29821684 -91435846 + (TGGGGG)n Simple_repeat Simple_repeat 1 48 0 4 812 609 14 0 0 chr12 29824459 29824529 -91433001 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 812 237 108 0 0 chr12 29825170 29825207 -91432323 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 4 812 730 154 13 34 chr12 29825223 29825457 -91432073 + CT-rich Low_complexity Low_complexity 1 229 0 4 812 710 337 37 57 chr12 29827696 29827992 -91429538 + B4A SINE B4 1 290 -2 4 812 182 222 28 0 chr12 29828679 29828715 -91428815 - L3 LINE CR1 -295 4194 4158 4 812 287 284 17 8 chr12 29828761 29828878 -91428652 + (TTAGGG)n Simple_repeat Simple_repeat 2 119 0 4 812 338 241 11 44 chr12 29829293 29829306 -91428224 - PB1D10 SINE Alu 0 117 106 4 812 396 0 0 0 chr12 29829306 29829350 -91428180 + (TTCTC)n Simple_repeat Simple_repeat 1 44 0 4 812 887 51 8 0 chr12 29829350 29829467 -91428063 + (TTTC)n Simple_repeat Simple_repeat 2 119 0 4 812 338 241 11 44 chr12 29829467 29829543 -91427987 - PB1D10 SINE Alu -12 105 31 4 812 189 370 22 0 chr12 29829644 29829736 -91427794 + L3 LINE CR1 4182 4275 -214 4 812 800 252 68 78 chr12 29829833 29830054 -91427476 + B4A SINE B4 3 222 -70 4 812 480 35 0 0 chr12 29830054 29830112 -91427418 + (CTAA)n Simple_repeat Simple_repeat 3 60 0 4 812 800 252 68 78 chr12 29830112 29830183 -91427347 + B4A SINE B4 223 291 -1 4 812 522 0 0 0 chr12 29830970 29831028 -91426502 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 812 813 117 0 0 chr12 29831028 29831155 -91426375 + (GA)n Simple_repeat Simple_repeat 1 128 0 4 812 231 36 0 0 chr12 29831211 29831239 -91426291 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 812 785 87 9 0 chr12 29831239 29831353 -91426177 + (GA)n Simple_repeat Simple_repeat 1 116 0 4 812 303 28 0 0 chr12 29831409 29831445 -91426085 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 812 974 91 7 0 chr12 29831445 29831587 -91425943 + (GA)n Simple_repeat Simple_repeat 1 144 0 4 812 301 306 16 16 chr12 29832173 29832354 -91425176 + (CATA)n Simple_repeat Simple_repeat 1 181 0 4 812 421 312 0 34 chr12 29832381 29832557 -91424973 + (CATA)n Simple_repeat Simple_repeat 3 172 0 4 812 235 295 28 44 chr12 29832722 29832903 -91424627 + (CATA)n Simple_repeat Simple_repeat 2 179 0 4 812 367 299 28 18 chr12 29832933 29833042 -91424488 + MLT1A LTR MaLR 3 112 -262 4 812 1236 123 17 0 chr12 29833053 29833232 -91424298 - ORR1B1 LTR MaLR -2 392 211 4 812 3593 185 16 20 chr12 29833244 29833880 -91423650 - Lx5 LINE L1 -6 7044 6412 4 812 3300 164 30 10 chr12 29833880 29834483 -91423047 + Lx5 LINE L1 5741 6355 -695 4 812 1362 152 31 39 chr12 29834483 29834737 -91422793 - ORR1B1 LTR MaLR -142 252 1 4 812 955 143 143 4 chr12 29834815 29835010 -91422520 + ORR1B1 LTR MaLR 1 192 -202 4 812 4287 114 87 25 chr12 29835065 29835776 -91421754 + RMER6A LTR ERVK 2 756 0 4 812 225 88 0 0 chr12 29837178 29837189 -91420341 + (TC)n Simple_repeat Simple_repeat 2 12 0 4 812 1602 0 0 0 chr12 29837189 29837367 -91420163 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 4 812 225 88 0 0 chr12 29837367 29837389 -91420141 + (TC)n Simple_repeat Simple_repeat 2 23 0 4 812 474 282 137 9 chr12 29837389 29837418 -91420112 - ID_B1 SINE B4 0 224 156 4 812 524 239 62 0 chr12 29837418 29837531 -91419999 - B1F1 SINE Alu -29 120 1 4 812 474 282 137 9 chr12 29837531 29837587 -91419943 - ID_B1 SINE B4 0 155 16 4 812 341 269 75 30 chr12 29837933 29838067 -91419463 - B1F2 SINE Alu -9 140 1 4 812 1426 91 0 0 chr12 29838155 29838341 -91419189 - L1_Mm LINE L1 -772 5111 4926 4 812 226 279 36 79 chr12 29838341 29838481 -91419049 + MER72B LTR ERV1 280 413 -355 4 812 2796 39 0 0 chr12 29838481 29838815 -91418715 - L1_Mm LINE L1 -1098 4785 4452 4 812 3861 47 0 0 chr12 29838814 29839280 -91418250 + L1Md_F3 LINE L1 5121 5586 -297 4 812 8173 40 10 0 chr12 29839280 29840268 -91417262 + L1Md_F3 LINE L1 5587 6584 0 4 812 778 211 96 0 chr12 29840289 29840455 -91417075 + RMER15 LTR ERVL 289 470 -105 4 812 207 0 0 0 chr12 29840455 29840478 -91417052 + (A)n Simple_repeat Simple_repeat 1 23 0 4 812 249 181 23 103 chr12 29840718 29840790 -91416740 - MLT1G3 LTR MaLR -7 588 473 5 812 331 330 46 0 chr12 29840798 29840907 -91416623 - Tigger5 DNA MER2_type -8 2398 2285 5 812 249 341 78 39 chr12 29840956 29841084 -91416446 - Tigger5 DNA MER2_type -2242 164 32 5 812 815 333 8 40 chr12 29841600 29841850 -91415680 - B4 SINE B4 -6 286 45 5 812 1524 185 120 15 chr12 29841858 29842192 -91415338 - ORR1D1 LTR MaLR 0 374 6 5 812 1210 203 44 56 chr12 29842188 29842507 -91415023 - ORR1E LTR MaLR -38 321 7 5 812 193 381 0 0 chr12 29842651 29842714 -91414816 - L2b LINE L2 -213 3162 3100 5 812 1762 190 132 126 chr12 29843515 29844045 -91413485 + MT2A LTR ERVL 1 533 0 5 812 357 296 45 0 chr12 29844943 29845031 -91412499 + B4 SINE B4 91 182 -110 5 812 461 291 0 46 chr12 29845110 29845283 -91412247 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 5 812 186 246 0 0 chr12 29845334 29845395 -91412135 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 812 346 322 7 34 chr12 29845426 29845630 -91411900 + (CATA)n Simple_repeat Simple_repeat 1 198 0 5 812 1256 220 84 94 chr12 29848405 29848776 -91408754 + MTE2b LTR MaLR 1 367 -12 5 812 324 167 18 27 chr12 29849047 29849158 -91408372 + CT-rich Low_complexity Low_complexity 1 110 0 5 812 1245 53 7 21 chr12 29849248 29849539 -91407991 + (TATG)n Simple_repeat Simple_repeat 1 286 0 5 812 777 278 10 167 chr12 29849992 29850386 -91407144 + MTEa LTR MaLR 46 405 -14 5 812 267 31 0 0 chr12 29850890 29850922 -91406608 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 812 308 24 24 0 chr12 29850924 29850965 -91406565 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 5 812 357 321 9 9 chr12 29851718 29851828 -91405702 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 812 331 271 134 8 chr12 29852136 29852255 -91405275 - MIRb SINE MIR -32 236 103 5 812 1461 136 27 0 chr12 29853540 29853760 -91403770 + URR1A DNA MER1_type 1 226 0 5 812 406 301 44 7 chr12 29854231 29854368 -91403162 + Tigger5 DNA MER2_type 2233 2374 -32 5 812 256 295 200 24 chr12 29854380 29854550 -91402980 - MLT2D LTR ERVL -41 373 174 5 812 272 270 89 36 chr12 29854779 29854905 -91402625 + MLT1A1 LTR MaLR 235 402 -6 5 812 230 206 15 60 chr12 29854902 29854969 -91402561 - MLT2D LTR ERVL -379 177 114 5 812 265 308 109 17 chr12 29854975 29855094 -91402436 - MTEa LTR MaLR -4 375 246 5 812 295 365 11 43 chr12 29855042 29855228 -91402302 - MER82 DNA MER2_type -374 279 100 5 812 230 122 0 24 chr12 29855275 29855317 -91402213 + MLT2B4 LTR ERVL 48 88 -468 5 812 270 0 0 0 chr12 29855358 29855388 -91402142 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 5 812 189 0 0 0 chr12 29855401 29855422 -91402108 + (TATG)n Simple_repeat Simple_repeat 1 21 0 5 812 270 326 159 61 chr12 29855456 29855721 -91401809 - B4A SINE B4 0 292 2 5 812 302 98 20 5 chr12 29855727 29855778 -91401752 + ORR1E LTR MaLR 6 54 -320 5 812 465 213 116 184 chr12 29857583 29857790 -91399740 - B3 SINE B2 -1 197 1 5 812 311 17 16 79 chr12 29857920 29857983 -91399547 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 5 812 360 0 0 0 chr12 29858432 29858472 -91399058 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 812 186 300 32 32 chr12 29858701 29858763 -91398767 + L4 LINE RTE 1156 1217 -812 5 812 430 272 26 9 chr12 29859688 29859803 -91397727 + PB1D7 SINE Alu 2 118 -2 5 812 350 129 0 16 chr12 29860490 29860553 -91396977 + (CAGA)n Simple_repeat Simple_repeat 3 64 0 5 812 187 328 40 34 chr12 29860570 29860671 -91396859 + MIR SINE MIR 9 110 -158 5 812 531 0 0 0 chr12 29862934 29862993 -91394537 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 5 812 1687 31 0 0 chr12 29863875 29864067 -91393463 - B2_Mm1t SINE B2 0 193 2 5 812 573 15 0 0 chr12 29864090 29864156 -91393374 + (TTA)n Simple_repeat Simple_repeat 2 67 0 5 812 253 338 87 13 chr12 29864358 29864508 -91393022 + MIRb SINE MIR 25 189 -79 5 812 234 307 40 13 chr12 29866383 29866459 -91391071 + ID SINE ID 6 83 -141 5 812 400 277 73 0 chr12 29866459 29866596 -91390934 + B1F2 SINE Alu 1 147 -2 5 812 438 20 0 0 chr12 29868535 29868586 -91388944 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 5 812 423 0 0 0 chr12 29868740 29868787 -91388743 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 812 243 300 0 0 chr12 29870931 29870991 -91386539 + ID4 SINE ID 22 81 -2 5 812 285 29 0 0 chr12 29871009 29871043 -91386487 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 812 405 0 0 0 chr12 29871043 29871088 -91386442 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 812 1054 338 43 37 chr12 29871124 29871611 -91385919 - MT2A LTR ERVL 0 520 3 5 812 192 290 97 29 chr12 29872343 29872446 -91385084 - MIR SINE MIR -132 130 21 5 812 2359 111 0 12 chr12 29873669 29873928 -91383602 + ORR1A3 LTR MaLR 1 256 -70 5 812 1674 81 0 9 chr12 29873928 29874152 -91383378 + L1Md_F2 LINE L1 6349 6570 -12 5 812 2359 111 0 12 chr12 29874152 29874221 -91383309 + ORR1A3 LTR MaLR 257 325 -1 5 812 457 243 8 12 chr12 29875572 29875814 -91381716 + CT-rich Low_complexity Low_complexity 1 241 0 5 812 932 251 151 15 chr12 29876168 29876500 -91381030 + MTEb LTR MaLR 3 379 0 5 812 819 323 101 82 chr12 29877381 29878042 -91379488 - MER21B LTR ERV1 -92 771 98 5 812 604 189 7 7 chr12 29878117 29878261 -91379269 + (TG)n Simple_repeat Simple_repeat 2 145 0 5 812 495 0 0 0 chr12 29878261 29878316 -91379214 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 812 216 261 130 0 chr12 29878847 29878916 -91378614 + B4 SINE B4 9 86 -206 5 812 27 0 0 0 chr12 29880708 29880735 -91376795 + AT_rich Low_complexity Low_complexity 1 27 0 5 812 513 0 0 0 chr12 29880799 29880856 -91376674 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 812 21 0 0 0 chr12 29881009 29881030 -91376500 + AT_rich Low_complexity Low_complexity 1 21 0 5 812 300 197 49 0 chr12 29881727 29881788 -91375742 + HAL1-3A_ME LINE L1 2674 2737 -121 5 812 348 351 6 33 chr12 29882956 29883136 -91374394 + CT-rich Low_complexity Low_complexity 5 179 0 5 101 1490 229 87 15 chr12 29884342 29884733 -91372797 - MTD LTR MaLR 0 419 1 5 813 219 269 28 69 chr12 29884913 29884985 -91372545 - ID4_ SINE ID -1 82 14 5 813 275 243 243 26 chr12 29888585 29888720 -91368810 - MIRc SINE MIR -86 182 17 5 813 661 226 276 5 chr12 29888789 29888991 -91368539 + MTD LTR MaLR 17 273 -146 5 813 226 347 40 20 chr12 29889079 29889179 -91368351 - MLT1A1 LTR MaLR -294 114 13 5 813 362 243 121 29 chr12 29890121 29890261 -91367269 - HAL1-3A_ME LINE L1 -420 2438 2286 5 813 24 0 0 0 chr12 29890378 29890402 -91367128 + AT_rich Low_complexity Low_complexity 1 24 0 5 813 198 103 0 0 chr12 29890447 29890476 -91367054 + (TATG)n Simple_repeat Simple_repeat 2 30 0 5 813 337 270 67 11 chr12 29890485 29890575 -91366955 - RSINE1 SINE B4 -17 148 54 5 813 327 266 102 10 chr12 29891211 29891350 -91366180 + MLT1H1 LTR MaLR 420 565 -4 5 813 242 57 18 54 chr12 29893048 29893104 -91364426 + (GGGTG)n Simple_repeat Simple_repeat 3 56 0 5 813 205 312 0 15 chr12 29893226 29893291 -91364239 + GA-rich Low_complexity Low_complexity 4 67 0 5 813 459 0 0 0 chr12 29893576 29893627 -91363903 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 813 402 0 0 49 chr12 29893845 29893906 -91363624 + (CAAAA)n Simple_repeat Simple_repeat 4 61 0 5 813 262 160 41 41 chr12 29894526 29894624 -91362906 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 5 813 291 217 28 0 chr12 29894663 29894769 -91362761 + (TCCA)n Simple_repeat Simple_repeat 2 110 0 5 813 963 342 110 45 chr12 29894835 29895708 -91361822 + L2a LINE L2 1648 2577 -842 5 813 183 282 173 11 chr12 29896476 29896655 -91360875 + L2a LINE L2 3101 3308 -118 5 813 228 234 92 15 chr12 29896854 29896919 -91360611 + LTR78 LTR ERV1 1160 1229 -75 5 813 192 267 87 22 chr12 29897412 29897504 -91360026 - MIR3 SINE MIR -49 159 62 5 813 192 245 57 0 chr12 29898597 29898650 -91358880 + MIRm SINE MIR 127 182 -94 5 813 477 0 0 0 chr12 29899374 29899427 -91358103 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 813 191 189 54 0 chr12 29899626 29899663 -91357867 - MIRb SINE MIR -127 141 103 5 813 306 0 0 0 chr12 29901429 29901463 -91356067 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 813 230 254 55 27 chr12 29902610 29902683 -91354847 + RMER12 LTR ERVK 750 824 -498 5 813 574 285 122 41 chr12 29902709 29903083 -91354447 - L1MA4A LINE L1 -353 5938 5533 5 813 522 0 0 0 chr12 29903138 29903196 -91354334 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 813 215 306 124 68 chr12 29903382 29903631 -91353899 - L2 LINE L2 -458 2961 2699 5 813 321 352 115 50 chr12 29904326 29904786 -91352744 - L2 LINE L2 -1639 1780 1291 5 813 251 224 17 0 chr12 29904897 29904955 -91352575 - ORR1D1 LTR MaLR -6 368 310 5 813 1145 133 134 25 chr12 29905033 29905234 -91352296 + URR1B DNA MER1_type 3 225 0 5 813 187 227 44 22 chr12 29906713 29906758 -91350772 - L2b LINE L2 -23 3352 3307 5 813 253 320 62 56 chr12 29907018 29907197 -91350333 + L2c LINE L2 2931 3110 -277 5 813 288 0 0 0 chr12 29907274 29907306 -91350224 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 813 374 228 10 0 chr12 29907365 29907466 -91350064 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 813 5232 42 0 0 chr12 29908902 29909629 -91347901 - L1Md_F2 LINE L1 -623 5959 5233 5 813 235 229 49 0 chr12 29909727 29909788 -91347742 + MIRb SINE MIR 55 118 -150 5 813 468 274 0 42 chr12 29910351 29910469 -91347061 + PB1D10 SINE Alu 3 115 -2 5 813 267 31 0 0 chr12 29911546 29911578 -91345952 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 813 228 220 0 20 chr12 29912061 29912112 -91345418 + G-rich Low_complexity Low_complexity 1 50 0 6 813 412 153 48 30 chr12 29912520 29912688 -91344842 + (TG)n Simple_repeat Simple_repeat 2 172 0 6 813 818 276 23 32 chr12 29913223 29913440 -91344090 + ID_B1 SINE B4 9 223 -1 6 813 192 40 0 0 chr12 29913780 29913805 -91343725 + (CTG)n Simple_repeat Simple_repeat 2 26 0 6 813 396 0 0 0 chr12 29914938 29914982 -91342548 + (CCAA)n Simple_repeat Simple_repeat 3 46 0 6 813 234 0 0 0 chr12 29915229 29915255 -91342275 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 813 237 242 145 0 chr12 29915757 29915819 -91341711 + MTE2b LTR MaLR 3 73 -306 6 813 936 281 74 31 chr12 29916542 29916736 -91340794 - RLTR11B LTR ERVK -18 423 221 6 813 699 12 0 0 chr12 29916736 29916816 -91340714 + (TCC)n Simple_repeat Simple_repeat 2 81 0 6 813 936 264 89 32 chr12 29916816 29917015 -91340515 - RLTR11B LTR ERVK -233 220 1 6 813 186 171 0 0 chr12 29918301 29918342 -91339188 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 813 313 287 14 1 chr12 29919564 29919641 -91337889 - B1F1 SINE Alu -35 85 9 6 813 468 0 0 0 chr12 29920023 29920075 -91337455 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 813 432 0 0 0 chr12 29920075 29920122 -91337408 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 813 681 256 55 11 chr12 29920908 29921090 -91336440 - RMER30 DNA MER1_type -7 195 6 6 813 198 143 0 0 chr12 29921275 29921310 -91336220 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 6 813 205 225 275 22 chr12 29921312 29921403 -91336127 + MIRb SINE MIR 125 238 -30 6 813 231 36 0 0 chr12 29921695 29921723 -91335807 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 813 215 157 20 0 chr12 29922021 29922072 -91335458 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 813 506 157 38 6 chr12 29922155 29922315 -91335215 + (TG)n Simple_repeat Simple_repeat 2 166 0 6 813 182 208 146 0 chr12 29924610 29924658 -91332872 + L3b LINE CR1 185 239 -243 6 813 2929 215 110 18 chr12 29925552 29926295 -91331235 - RLTR40 LTR ERVK -5 812 1 6 813 322 357 108 21 chr12 29928910 29929150 -91328380 - MLT1F2 LTR MaLR -120 440 180 6 813 306 235 12 36 chr12 29929173 29929341 -91328189 + GA-rich Low_complexity Low_complexity 3 166 0 6 813 2671 122 21 5 chr12 29929698 29930086 -91327444 + ORR1B1 LTR MaLR 1 394 0 6 813 248 287 151 13 chr12 29933527 29933686 -91323844 + MLT1A1 LTR MaLR 228 408 0 6 813 694 218 7 34 chr12 29933965 29934112 -91323418 - B1_Mur1 SINE Alu -5 144 2 6 813 329 293 80 10 chr12 29934422 29934522 -91323008 + ID_B1 SINE B4 93 199 -25 6 813 2055 201 33 10 chr12 29934541 29934937 -91322593 - MTC LTR MaLR 0 421 17 6 813 774 199 7 27 chr12 29935109 29935259 -91322271 - ORR1B1 LTR MaLR -2 392 246 6 813 24 0 0 0 chr12 29936726 29936750 -91320780 + GC_rich Low_complexity Low_complexity 1 24 0 6 813 191 268 0 0 chr12 29938152 29938193 -91319337 - MIR SINE MIR -3 259 219 6 813 304 277 89 32 chr12 29939328 29939451 -91318079 - MLT1B LTR MaLR -9 381 252 6 813 247 235 48 36 chr12 29939477 29939561 -91317969 + MLT2B4 LTR ERVL 20 104 -452 6 813 1066 209 92 19 chr12 29940240 29940517 -91317013 + MTC LTR MaLR 118 421 0 6 813 344 296 112 0 chr12 29940517 29940641 -91316889 - RMER15 LTR ERVL -437 138 1 6 813 932 255 125 32 chr12 29940857 29941169 -91316361 + MTE2b LTR MaLR 1 341 -38 6 813 355 221 16 0 chr12 29941402 29941524 -91316006 + (TA)n Simple_repeat Simple_repeat 2 125 0 6 813 306 0 0 0 chr12 29943128 29943162 -91314368 + (A)n Simple_repeat Simple_repeat 1 34 0 6 813 390 276 75 35 chr12 29944598 29944771 -91312759 - ORR1E LTR MaLR -162 197 18 6 813 278 316 38 12 chr12 29944778 29944858 -91312672 - MTE-int LTR MaLR -44 1536 1455 6 813 2063 246 101 95 chr12 29945067 29945847 -91311683 - Lx8 LINE L1 -252 7221 6437 6 813 1661 341 92 68 chr12 29945847 29946295 -91311235 - MTE-int LTR MaLR -115 1465 984 6 813 2666 43 65 0 chr12 29946295 29946618 -91310912 + ORR1A1 LTR MaLR 1 344 -2 6 813 1661 341 92 68 chr12 29946618 29947131 -91310399 - MTE-int LTR MaLR -597 983 482 6 813 403 340 31 19 chr12 29947179 29947338 -91310192 - MTE-int LTR MaLR -1321 259 99 6 813 288 243 0 0 chr12 29947363 29947437 -91310093 + CT-rich Low_complexity Low_complexity 12 85 0 6 813 861 119 20 0 chr12 29947423 29947574 -91309956 + (TTCC)n Simple_repeat Simple_repeat 4 157 0 6 813 485 35 0 0 chr12 29947574 29947631 -91309899 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 813 2586 97 3 24 chr12 29947631 29948011 -91309519 - Lx LINE L1 -1 6653 6282 6 813 364 218 0 13 chr12 29948011 29948090 -91309440 - MTE-int LTR MaLR -1486 94 17 6 813 424 352 83 48 chr12 29948932 29949335 -91308195 - L1M5 LINE L1 -400 5724 5304 6 813 952 100 0 58 chr12 29950928 29951119 -91306411 + GA-rich Low_complexity Low_complexity 1 180 0 6 813 400 96 0 52 chr12 29951101 29951178 -91306352 + (AGGGGG)n Simple_repeat Simple_repeat 2 74 0 6 813 289 313 76 134 chr12 29951211 29951643 -91305887 - MLT1A1 LTR MaLR 0 408 2 6 813 720 141 0 0 chr12 29952673 29952794 -91304736 + (CA)n Simple_repeat Simple_repeat 1 121 0 6 813 288 170 0 0 chr12 29953774 29953827 -91303703 + (TATG)n Simple_repeat Simple_repeat 4 56 0 6 813 274 372 46 15 chr12 29953827 29953958 -91303572 + MLT1J LTR MaLR 70 204 -308 6 813 405 0 0 0 chr12 29954053 29954098 -91303432 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 813 329 322 39 65 chr12 29954386 29954539 -91302991 + ORR1E LTR MaLR 13 161 -198 6 813 198 0 0 0 chr12 29954701 29954723 -91302807 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 813 1770 275 164 78 chr12 29954757 29955612 -91301918 + ORR1E-int LTR MaLR 1 929 -651 6 813 709 239 164 15 chr12 29955612 29955864 -91301666 + MTD LTR MaLR 3 302 -105 6 813 308 0 37 37 chr12 29955891 29955945 -91301585 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 813 1646 286 112 17 chr12 29955997 29956524 -91301006 + ORR1E-int LTR MaLR 974 1550 -30 6 813 506 348 51 51 chr12 29956508 29956859 -91300671 + ORR1E LTR MaLR 8 358 -1 6 813 2350 104 0 49 chr12 29958819 29959163 -91298367 + ORR1A2 LTR MaLR 1 327 0 6 813 1982 149 0 7 chr12 29959964 29960274 -91297256 + RLTR10E LTR ERVK 1 308 -3 6 813 198 256 108 60 chr12 29962502 29962585 -91294945 - L4 LINE RTE -1267 762 676 6 813 1340 216 176 6 chr12 29962723 29963081 -91294449 - MTD LTR MaLR 0 419 1 6 813 3112 54 48 13 chr12 29963584 29963977 -91293553 + MTB_Mm LTR MaLR 1 407 0 6 813 459 298 97 5 chr12 29964250 29964456 -91293074 - MLT1D LTR MaLR -272 233 9 6 813 320 254 0 0 chr12 29966570 29966637 -91290893 + L1MB7 LINE L1 6077 6143 -41 6 813 955 270 9 5 chr12 29966656 29966868 -91290662 + ID_B1 SINE B4 12 224 0 6 813 249 275 29 0 chr12 29966925 29966994 -91290536 - MIR3 SINE MIR -21 187 117 6 813 215 160 0 39 chr12 29968658 29968710 -91288820 + (CGTG)n Simple_repeat Simple_repeat 1 50 0 6 813 233 293 23 68 chr12 29968978 29969066 -91288464 + LTR83 LTR ERVL 339 422 -358 6 813 193 233 149 14 chr12 29969290 29969364 -91288166 - MIR SINE MIR -60 148 65 6 813 325 314 94 25 chr12 29970972 29971132 -91286398 - MLT1A0 LTR MaLR 0 365 195 6 813 300 356 76 96 chr12 29971315 29971669 -91285861 - ORR1E LTR MaLR -12 347 1 6 813 209 341 12 0 chr12 29972214 29972299 -91285231 + (CATATA)n Simple_repeat Simple_repeat 2 87 0 6 813 39 60 0 0 chr12 29972856 29972923 -91284607 + AT_rich Low_complexity Low_complexity 1 67 0 6 813 303 311 101 44 chr12 29973558 29973716 -91283814 - L1MEf LINE L1 -5159 1041 875 6 813 743 258 191 87 chr12 29973876 29974204 -91283326 + MTD LTR MaLR 3 370 -9 6 813 241 289 119 34 chr12 29974197 29974315 -91283215 - RMER5 LTR ERV1 -212 322 195 6 813 1098 67 0 0 chr12 29976480 29976615 -91280915 + B1_Mus1 SINE Alu 2 136 -12 6 813 276 30 0 0 chr12 29976618 29976651 -91280879 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 813 432 0 0 0 chr12 29976676 29976724 -91280806 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 6 813 355 216 21 37 chr12 29976901 29977003 -91280527 - ID4 SINE ID -48 104 5 6 813 257 280 21 21 chr12 29977037 29977132 -91280398 - L1MA8 LINE L1 -27 6264 6170 6 813 1003 285 47 22 chr12 29977147 29977509 -91280021 + L1MA8 LINE L1 5732 6102 -189 6 813 1265 245 128 11 chr12 29977651 29978024 -91279506 + MTD LTR MaLR 1 398 -21 6 813 784 251 52 55 chr12 29978026 29978123 -91279407 - L1MA8 LINE L1 -751 5561 5473 6 813 1046 167 69 32 chr12 29978123 29978275 -91279255 + URR1B DNA MER1_type 2 156 -69 6 813 195 42 0 0 chr12 29978275 29978299 -91279231 + (TGGG)n Simple_repeat Simple_repeat 1 24 0 6 813 1046 167 69 32 chr12 29978299 29978362 -91279168 + URR1B DNA MER1_type 157 225 0 6 813 1208 274 83 54 chr12 29978362 29979158 -91278372 - L1MA8 LINE L1 -840 5472 4641 6 813 11776 38 20 28 chr12 29979131 29980483 -91277047 - L1Md_F3 LINE L1 -8 6576 5268 6 813 4505 40 0 0 chr12 29980483 29981010 -91276520 - L1Md_T LINE L1 0 6582 6056 6 813 11776 103 74 83 chr12 29981010 29981348 -91276182 - L1Md_F3 LINE L1 -616 5267 4892 6 813 234 286 35 76 chr12 29981348 29981492 -91276038 + MER72B LTR ERV1 276 413 -355 6 813 11776 103 74 83 chr12 29981492 29982589 -91274941 - L1Md_F3 LINE L1 -616 4891 3669 6 813 243 385 0 9 chr12 29982876 29982986 -91274544 + MTE-int LTR MaLR 573 681 -899 6 813 714 336 38 14 chr12 29982984 29983271 -91274259 + MTE-int LTR MaLR 795 1088 -492 6 813 2829 63 39 5 chr12 29983278 29983661 -91273869 - MTA_Mm LTR MaLR 0 396 1 6 813 912 266 113 4 chr12 29983662 29983900 -91273630 - MTEa LTR MaLR -98 281 18 6 813 296 341 23 23 chr12 29983784 29983913 -91273617 - MT2A LTR ERVL -400 133 5 6 813 623 306 92 75 chr12 29983990 29984339 -91273191 + ORR1E LTR MaLR 1 355 -4 6 813 1425 265 46 11 chr12 29985171 29985522 -91272008 + MTE2b LTR MaLR 13 375 -4 6 813 22 0 0 0 chr12 29985944 29985966 -91271564 + AT_rich Low_complexity Low_complexity 1 22 0 6 813 239 358 0 69 chr12 29986513 29986615 -91270915 + MER5A DNA MER1_type 5 99 -90 6 813 1607 37 5 10 chr12 29986771 29986963 -91270567 + B2_Mm1a SINE B2 2 192 -1 6 813 419 274 0 6 chr12 29987209 29987374 -91270156 + GA-rich Low_complexity Low_complexity 1 164 0 6 813 189 229 0 0 chr12 29987803 29987851 -91269679 + GA-rich Low_complexity Low_complexity 1 48 0 6 813 378 107 0 0 chr12 29987892 29987948 -91269582 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 813 726 321 33 28 chr12 29988064 29988306 -91269224 - B4 SINE B4 -47 245 2 7 813 276 214 224 0 chr12 29990308 29990406 -91267124 + RMER15 LTR ERVL 9 128 -447 7 813 418 305 121 89 chr12 29990411 29990724 -91266806 + RMER15 LTR ERVL 251 573 -2 7 813 229 217 0 0 chr12 29990944 29990990 -91266540 - MLT2D LTR ERVL 0 560 515 7 813 704 337 0 47 chr12 29991006 29991218 -91266312 - MT2A LTR ERVL -87 446 245 7 813 802 221 206 47 chr12 29991397 29991753 -91265777 - MTD LTR MaLR -1 418 6 7 813 180 77 0 0 chr12 29992139 29992165 -91265365 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 813 342 0 0 0 chr12 29992220 29992258 -91265272 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 813 396 132 45 57 chr12 29992277 29992365 -91265165 - MTD LTR MaLR 0 419 333 7 813 189 121 0 0 chr12 29992366 29992399 -91265131 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 813 313 233 0 0 chr12 29992766 29992826 -91264704 + CT-rich Low_complexity Low_complexity 5 64 0 7 813 209 125 0 24 chr12 29993000 29993041 -91264489 + (CACCC)n Simple_repeat Simple_repeat 3 42 0 7 813 315 346 38 8 chr12 29996219 29996350 -91261180 - L1MC LINE L1 -785 5361 5227 7 813 505 279 10 0 chr12 29996656 29996760 -91260770 - RSINE1 SINE B4 -8 157 53 7 813 275 362 37 66 chr12 29997477 29997613 -91259917 - MER63A DNA AcHobo -62 148 17 7 813 540 0 0 0 chr12 30000450 30000510 -91257020 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 813 561 158 0 0 chr12 30001680 30001781 -91255749 + CT-rich Low_complexity Low_complexity 4 104 0 2 813 303 315 131 16 chr12 30002511 30002756 -91254774 - L1MC3 LINE L1 -1899 5886 5614 3 813 246 62 0 0 chr12 30002763 30002795 -91254735 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 813 203 304 0 0 chr12 30002821 30002877 -91254653 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 813 863 308 40 29 chr12 30002884 30003158 -91254372 - B4 SINE B4 -2 290 14 6 813 1952 292 129 26 chr12 30003319 30003672 -91253858 - L1MC3 LINE L1 -805 5341 4957 3 813 225 0 0 0 chr12 30003672 30003697 -91253833 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 7 813 1952 292 129 26 chr12 30003697 30004668 -91252862 - L1MC3 LINE L1 -1190 4956 3880 3 813 275 161 51 56 chr12 30004709 30004887 -91252643 + (CATG)n Simple_repeat Simple_repeat 2 178 0 8 813 601 184 178 32 chr12 30004900 30005057 -91252473 - B3A SINE B2 -18 180 1 9 813 293 318 84 0 chr12 30005107 30005214 -91252316 - ID_B1 SINE B4 -7 217 102 1 813 825 158 65 48 chr12 30005679 30005865 -91251665 + B2_Mm2 SINE B2 2 190 -5 1 813 222 116 0 0 chr12 30007033 30007076 -91250454 + (A)n Simple_repeat Simple_repeat 1 43 0 1 813 310 21 0 41 chr12 30007485 30007534 -91249996 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 813 723 163 18 0 chr12 30007607 30007773 -91249757 + CT-rich Low_complexity Low_complexity 1 169 0 1 813 435 245 6 12 chr12 30007791 30007956 -91249574 + CT-rich Low_complexity Low_complexity 3 166 0 1 813 1324 161 35 12 chr12 30009426 30009684 -91247846 + RMER10B LTR ERVL 1 264 -134 1 813 362 21 21 0 chr12 30009685 30009732 -91247798 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 1 813 1020 172 60 15 chr12 30009732 30009933 -91247597 + RMER10B LTR ERVL 189 398 0 1 813 5804 63 1 20 chr12 30010803 30011554 -91245976 + L1Md_F2 LINE L1 5840 6576 -6 1 813 2778 104 65 0 chr12 30012588 30013002 -91244528 + BGLII_B LTR ERVK 1 441 0 1 813 1298 270 43 14 chr12 30013091 30013459 -91244071 - MTE2b LTR MaLR 0 379 1 2 813 645 294 194 9 chr12 30013662 30013981 -91243549 - MLT1B LTR MaLR -12 378 1 2 814 213 175 0 0 chr12 30016566 30016606 -91240924 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 814 492 18 0 0 chr12 30016674 30016731 -91240799 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 814 495 0 0 0 chr12 30016975 30017030 -91240500 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 814 234 0 0 0 chr12 30017030 30017055 -91240475 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 814 306 234 180 0 chr12 30017157 30017268 -91240262 + L1M2 LINE L1 5598 5728 -584 2 814 370 244 78 0 chr12 30017426 30017516 -91240014 - MTE2b LTR MaLR -282 97 1 2 814 4202 18 35 6 chr12 30017678 30018171 -91239359 + L1Md_A LINE L1 6076 6582 0 2 814 244 417 65 58 chr12 30018657 30019085 -91238445 + MamGypLTR2c LTR Gypsy 130 560 -508 2 814 300 253 24 24 chr12 30020150 30020235 -91237295 + MER92C LTR ERV1 450 534 -20 3 814 341 297 30 0 chr12 30020601 30020702 -91236828 + MER5A1 DNA MER1_type 60 163 -3 3 814 1175 96 0 17 chr12 30021299 30021480 -91236050 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 3 814 261 257 19 65 chr12 30023283 30023391 -91234139 - PB1D7 SINE Alu 0 120 18 3 814 486 49 0 0 chr12 30023611 30023672 -91233858 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 814 324 0 0 0 chr12 30023672 30023707 -91233823 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 814 459 0 0 0 chr12 30023707 30023757 -91233773 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 814 551 329 12 36 chr12 30024083 30024250 -91233280 - RSINE1 SINE B4 -2 163 1 3 814 484 257 17 34 chr12 30024264 30024381 -91233149 - PB1D10 SINE Alu 0 117 3 3 814 245 418 0 18 chr12 30024381 30024493 -91233037 - Tigger9b DNA MER2_type -494 130 21 3 814 1005 272 56 62 chr12 30024590 30024900 -91232630 + ORR1E LTR MaLR 19 326 -33 4 814 3100 192 14 7 chr12 30024900 30025455 -91232075 - RMER15 LTR ERVL 0 575 17 4 814 468 0 0 0 chr12 30026004 30026056 -91231474 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 814 513 0 0 0 chr12 30026056 30026112 -91231418 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 814 340 303 63 32 chr12 30026122 30026248 -91231282 - ORR1E LTR MaLR -221 138 9 4 814 214 233 11 11 chr12 30026283 30026370 -91231160 + CT-rich Low_complexity Low_complexity 2 88 0 4 814 241 303 19 39 chr12 30026370 30026473 -91231057 - MER5A DNA MER1_type -3 186 86 4 814 601 248 0 16 chr12 30026807 30026930 -91230600 + B4 SINE B4 6 126 -166 4 814 292 37 0 100 chr12 30026946 30027006 -91230524 + (CAAAA)n Simple_repeat Simple_repeat 1 54 0 4 814 634 265 57 16 chr12 30027071 30027270 -91230260 + B3A SINE B2 5 215 -1 4 814 441 0 0 0 chr12 30027373 30027422 -91230108 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 814 435 331 0 29 chr12 30028839 30028976 -91228554 - B4A SINE B4 0 292 160 5 814 215 258 60 15 chr12 30028996 30029063 -91228467 - RSINE1 SINE B4 -84 81 12 5 814 464 273 84 44 chr12 30031069 30031272 -91226258 + L1M5 LINE L1 5529 5739 -440 5 814 664 278 73 0 chr12 30031422 30031627 -91225903 - ID_B1 SINE B4 0 224 5 5 814 508 196 0 48 chr12 30032854 30033042 -91224488 + CT-rich Low_complexity Low_complexity 2 180 0 5 814 200 256 0 0 chr12 30033047 30033086 -91224444 + polypyrimidine Low_complexity Low_complexity 3 41 0 5 814 302 203 184 26 chr12 30033089 30033165 -91224365 - PB1D10 SINE Alu -3 114 27 5 814 594 0 0 0 chr12 30033897 30033963 -91223567 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 814 219 69 0 0 chr12 30033967 30033996 -91223534 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 814 180 0 0 0 chr12 30036481 30036501 -91221029 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 814 522 0 0 0 chr12 30036501 30036558 -91220972 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 814 514 277 121 28 chr12 30036558 30036740 -91220790 + Lx8 LINE L1 6457 6655 -818 6 814 989 279 20 13 chr12 30036749 30037050 -91220480 + Lx8 LINE L1 6828 7130 -343 6 814 555 85 0 0 chr12 30039243 30039325 -91218205 + (GGGA)n Simple_repeat Simple_repeat 4 85 0 6 814 1075 237 113 61 chr12 30039700 30039829 -91217701 - MTD LTR MaLR -36 383 220 6 814 180 0 0 0 chr12 30039829 30039849 -91217681 + (G)n Simple_repeat Simple_repeat 1 20 0 6 814 1075 229 114 75 chr12 30039849 30040109 -91217421 - MTD LTR MaLR -133 286 11 6 814 264 122 0 0 chr12 30040710 30040751 -91216779 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 814 219 341 11 64 chr12 30040895 30040989 -91216541 - ID_B1 SINE B4 -57 167 79 6 814 498 226 0 0 chr12 30041004 30041172 -91216358 + (TG)n Simple_repeat Simple_repeat 2 169 0 6 814 267 79 0 0 chr12 30041217 30041255 -91216275 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 814 259 280 178 87 chr12 30041255 30041486 -91216044 - B4A SINE B4 0 292 41 6 814 269 250 61 30 chr12 30041607 30041673 -91215857 - MIRb SINE MIR -116 92 25 7 814 713 22 22 0 chr12 30042356 30042446 -91215084 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 7 814 1557 247 90 8 chr12 30045348 30045716 -91211814 + MTD LTR MaLR 1 398 -21 7 814 2972 89 13 0 chr12 30046928 30047323 -91210207 + MTB LTR MaLR 1 400 0 7 814 216 0 0 0 chr12 30047365 30047389 -91210141 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 814 243 0 0 0 chr12 30047389 30047415 -91210115 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 814 978 276 95 23 chr12 30047777 30048166 -91209364 + MTD LTR MaLR 1 417 -2 7 814 1242 199 170 18 chr12 30049812 30050115 -91207415 + ORR1D2 LTR MaLR 33 370 -4 7 814 185 119 24 0 chr12 30050857 30050899 -91206631 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7 814 237 296 36 24 chr12 30051567 30051650 -91205880 + MLT1B LTR MaLR 8 91 -299 7 814 6004 108 31 22 chr12 30051664 30052574 -91204956 + Lx2 LINE L1 6080 6997 0 8 814 912 114 0 0 chr12 30052582 30052722 -91204808 + (GA)n Simple_repeat Simple_repeat 2 141 0 8 814 197 286 111 28 chr12 30052884 30052992 -91204538 - MER5A DNA MER1_type -12 177 61 8 814 23 33 0 0 chr12 30055167 30055197 -91202333 + AT_rich Low_complexity Low_complexity 1 30 0 8 814 477 0 0 0 chr12 30056960 30057013 -91200517 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 814 304 272 109 0 chr12 30057868 30057960 -91199570 + RSINE1 SINE B4 2 103 -62 8 814 25 0 0 0 chr12 30058016 30058041 -91199489 + AT_rich Low_complexity Low_complexity 1 25 0 8 814 755 252 57 115 chr12 30058656 30059005 -91198525 + MTE2a LTR MaLR 2 330 -49 8 814 734 128 120 7 chr12 30059012 30059154 -91198376 - B2_Mm2 SINE B2 -11 184 27 8 814 309 356 82 29 chr12 30059303 30059618 -91197912 + MLT1B LTR MaLR 6 337 -53 8 814 207 0 0 0 chr12 30063023 30063046 -91194484 + (T)n Simple_repeat Simple_repeat 1 23 0 9 814 306 224 0 0 chr12 30063378 30063463 -91194067 + (TG)n Simple_repeat Simple_repeat 1 85 0 9 814 653 306 26 69 chr12 30063499 30063863 -91193667 - MLT2B4 LTR ERVL -68 346 8 9 814 38272 19 1 7 chr12 30064244 30069474 -91188056 + L1Md_T LINE L1 391 5586 -297 9 814 8144 55 1 0 chr12 30069474 30070469 -91187061 + L1Md_T LINE L1 5587 6582 0 9 814 252 22 43 22 chr12 30070475 30070521 -91187009 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 9 814 27791 10 0 0 chr12 30070522 30073639 -91183891 + L1Md_A LINE L1 2470 5586 -297 9 814 8941 17 0 0 chr12 30073639 30074634 -91182896 + L1Md_A LINE L1 5587 6581 -1 9 814 494 284 11 85 chr12 30074932 30075109 -91182421 + RSINE1 SINE B4 2 165 0 9 814 843 10 0 0 chr12 30075123 30075219 -91182311 + (GA)n Simple_repeat Simple_repeat 2 97 0 9 814 757 226 170 49 chr12 30076116 30076404 -91181126 + Lx8 LINE L1 7146 7468 -5 9 814 413 315 103 19 chr12 30076484 30076746 -91180784 + L1M5 LINE L1 5263 5546 -627 9 814 2209 97 12 59 chr12 30077177 30077516 -91180014 - ORR1A2 LTR MaLR -4 323 1 1 814 2377 125 53 10 chr12 30078027 30078423 -91179107 - MTC LTR MaLR -8 413 1 1 814 495 234 0 0 chr12 30079064 30079209 -91178321 + (CA)n Simple_repeat Simple_repeat 2 146 0 1 814 591 257 53 11 chr12 30081227 30081416 -91176114 + B3A SINE B2 2 198 0 1 814 257 308 0 0 chr12 30081505 30081583 -91175947 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 814 180 238 0 0 chr12 30081586 30081649 -91175881 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1 814 808 282 25 71 chr12 30081656 30082064 -91175466 - MT2A LTR ERVL -40 493 105 1 814 266 243 28 28 chr12 30082087 30082159 -91175371 - MTC LTR MaLR -349 72 1 1 814 473 290 70 35 chr12 30082220 30082420 -91175110 - B4A SINE B4 0 292 86 1 814 346 361 45 27 chr12 30083263 30083579 -91173951 + L1MEf LINE L1 834 1164 -5078 1 814 979 138 78 65 chr12 30083645 30083704 -91173826 + URR1A DNA MER1_type 7 81 -145 1 814 3607 20 0 0 chr12 30083704 30084100 -91173430 - MTA_Mm LTR MaLR 0 396 1 1 814 9234 36 4 1 chr12 30084100 30085195 -91172335 - MTA_Mm-int LTR MaLR 0 1098 1 1 814 3647 15 0 0 chr12 30085195 30085591 -91171939 - MTA_Mm LTR MaLR 0 396 1 1 814 979 138 78 65 chr12 30085591 30085746 -91171784 + URR1A DNA MER1_type 82 224 -2 1 814 286 284 0 0 chr12 30086394 30086461 -91171069 - PB1D10 SINE Alu -9 108 42 1 814 291 161 0 0 chr12 30086849 30086905 -91170625 + (ATG)n Simple_repeat Simple_repeat 1 56 0 1 814 790 240 68 99 chr12 30087156 30087252 -91170278 + B4 SINE B4 1 111 -181 1 814 717 12 0 0 chr12 30087252 30087334 -91170196 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 814 790 240 68 99 chr12 30087334 30087529 -91170001 + B4 SINE B4 112 283 -9 1 814 198 0 0 0 chr12 30087620 30087642 -91169888 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 814 1741 253 89 44 chr12 30088040 30088723 -91168807 - Lx8 LINE L1 -2 7471 6758 1 814 495 0 0 0 chr12 30088801 30088856 -91168674 + (CAG)n Simple_repeat Simple_repeat 1 55 0 1 814 319 327 181 20 chr12 30088920 30089372 -91168158 + L1MEf LINE L1 4155 4679 -1467 1 814 305 345 114 22 chr12 30089571 30089609 -91167921 + L1ME2 LINE L1 4899 4953 -1193 1 814 596 14 14 0 chr12 30089609 30089682 -91167848 + (GA)n Simple_repeat Simple_repeat 2 75 0 1 814 305 345 114 22 chr12 30089682 30089871 -91167659 + L1ME2 LINE L1 4954 5147 -999 1 814 793 224 29 43 chr12 30090003 30090213 -91167317 + Lx8 LINE L1 7142 7348 -125 1 814 481 230 47 67 chr12 30090230 30090379 -91167151 + RMER10B LTR ERVL 191 336 -62 1 814 521 198 8 0 chr12 30090379 30090505 -91167025 + (TA)n Simple_repeat Simple_repeat 1 127 0 1 814 303 184 0 0 chr12 30090505 30090554 -91166976 + HAL1-3A_ME LINE L1 1975 2023 -835 1 814 442 328 142 50 chr12 30090835 30091485 -91166045 + L1ME2 LINE L1 5451 6158 -6 1 814 287 363 15 73 chr12 30091649 30091854 -91165676 - MLT1K LTR MaLR -300 295 103 1 814 272 269 15 0 chr12 30092338 30092405 -91165125 + C-rich Low_complexity Low_complexity 2 69 0 1 814 513 0 0 0 chr12 30092424 30092481 -91165049 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 814 405 0 0 0 chr12 30093262 30093307 -91164223 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1 814 680 240 158 13 chr12 30095964 30096192 -91161338 + B4 SINE B4 1 261 -31 1 814 321 299 28 140 chr12 30096483 30096662 -91160868 - B4A SINE B4 0 292 134 1 814 236 302 23 0 chr12 30097837 30097923 -91159607 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 1 814 1365 202 105 20 chr12 30098195 30098539 -91158991 - ORR1D1 LTR MaLR -1 373 1 1 814 1166 202 0 22 chr12 30099358 30099586 -91157944 - URR1B DNA MER1_type 0 225 3 1 814 2303 104 0 58 chr12 30101254 30101601 -91155929 - ORR1A2 LTR MaLR 0 327 1 1 814 243 349 28 0 chr12 30103226 30103332 -91154198 - Tigger5 DNA MER2_type -1 2405 2297 1 814 609 318 28 9 chr12 30103338 30103554 -91153976 - Tigger5 DNA MER2_type -2185 221 2 1 814 1027 221 190 31 chr12 30104439 30104860 -91152670 - L1MC2 LINE L1 -9 6335 5848 1 814 1238 234 91 15 chr12 30104884 30105223 -91152307 + MTD LTR MaLR 40 404 -15 1 814 1113 286 108 18 chr12 30105237 30105816 -91151714 - L1MC2 LINE L1 -497 5847 5216 1 814 474 281 112 18 chr12 30105816 30105986 -91151544 + MTD LTR MaLR 1 186 -233 1 814 388 211 133 0 chr12 30106001 30106091 -91151439 + B1_Mus2 SINE Alu 14 115 -32 1 814 820 207 64 15 chr12 30106055 30106275 -91151255 + MTD LTR MaLR 170 404 -17 1 814 361 229 48 56 chr12 30106291 30106416 -91151114 - L1MD LINE L1 -924 5222 5099 1 814 268 378 0 7 chr12 30106762 30106911 -91150619 + (TGG)n Simple_repeat Simple_repeat 1 148 0 1 814 307 145 32 0 chr12 30107021 30107083 -91150447 - MTE2a LTR MaLR 0 379 316 1 814 282 241 46 46 chr12 30107092 30107179 -91150351 + MT2B LTR ERVL 170 256 -345 1 814 451 191 0 0 chr12 30107122 30107206 -91150324 + B1_Mus2 SINE Alu 45 128 -19 1 814 2504 210 32 4 chr12 30107222 30107691 -91149839 + RMER1B Other Other 1 482 -584 1 814 583 238 50 66 chr12 30109456 30109654 -91147876 - B3A SINE B2 0 198 4 1 814 497 110 0 21 chr12 30109674 30109767 -91147763 - L1_Mus4 LINE L1 -15 6621 6531 1 814 743 242 12 6 chr12 30110743 30110905 -91146625 + ORR1D1 LTR MaLR 1 163 -211 1 814 348 43 0 0 chr12 30110905 30110951 -91146579 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 814 513 0 0 0 chr12 30111627 30111684 -91145846 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 814 308 200 11 23 chr12 30114231 30114318 -91143212 + MLT1A1 LTR MaLR 323 408 0 1 814 1021 204 29 14 chr12 30114368 30114577 -91142953 - B3 SINE B2 -3 213 2 1 814 279 362 29 7 chr12 30115108 30115247 -91142283 - HERV16-int LTR ERVL -3127 1869 1728 1 814 635 301 64 39 chr12 30115327 30115638 -91141892 - HERV16-int LTR ERVL -3432 1564 1246 1 814 1595 82 0 0 chr12 30116083 30116291 -91141239 - L1_Mus2 LINE L1 0 6566 6359 1 814 6642 59 0 2 chr12 30116729 30117550 -91139980 + L1Md_F2 LINE L1 4770 5588 -295 1 814 8279 43 2 5 chr12 30117552 30118547 -91138983 + L1Md_F2 LINE L1 5591 6582 0 1 814 512 306 58 62 chr12 30118845 30119151 -91138379 - L1MA9 LINE L1 -292 6020 5717 1 814 3111 48 0 0 chr12 30119151 30119524 -91138006 - L1Md_F3 LINE L1 0 6584 6212 1 814 512 306 58 62 chr12 30119524 30119698 -91137832 - L1MA9 LINE L1 -596 5716 5542 1 814 287 224 0 0 chr12 30119970 30120028 -91137502 - PB1D10 SINE Alu -54 63 6 1 814 281 278 149 43 chr12 30120054 30120355 -91137175 - L1MA9 LINE L1 -758 5382 5050 1 814 459 253 26 58 chr12 30120691 30120846 -91136684 + B3A SINE B2 2 151 -47 1 814 741 12 0 0 chr12 30120849 30120935 -91136595 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 814 31 44 0 0 chr12 30120942 30120987 -91136543 + AT_rich Low_complexity Low_complexity 1 45 0 1 814 1981 165 20 61 chr12 30121470 30121863 -91135667 + ORR1C1 LTR MaLR 2 378 0 1 814 600 14 0 0 chr12 30121895 30121964 -91135566 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 1 814 559 237 70 28 chr12 30121995 30122138 -91135392 - B1_Mur1 SINE Alu 0 149 1 1 814 975 269 114 40 chr12 30123085 30123437 -91134093 + MTE2a LTR MaLR 2 379 0 1 814 829 282 38 53 chr12 30123805 30124067 -91133463 + B4 SINE B4 35 292 0 1 814 191 36 36 0 chr12 30124091 30124119 -91133411 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 814 430 306 28 44 chr12 30125445 30125626 -91131904 + MLT1C LTR MaLR 2 179 -288 1 814 330 194 0 0 chr12 30125794 30125861 -91131669 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 814 625 312 14 34 chr12 30126706 30126998 -91130532 - L1M3 LINE L1 -1377 4763 4478 1 814 509 257 86 49 chr12 30127125 30127444 -91130086 - L1MA4 LINE L1 -1477 5996 5703 1 814 325 252 94 50 chr12 30127562 30127721 -91129809 - B3 SINE B2 0 216 51 1 814 967 239 146 18 chr12 30127904 30128240 -91129290 - L1M3 LINE L1 -1995 4145 3767 1 814 1320 308 114 29 chr12 30128305 30128856 -91128674 - Lx8 LINE L1 -1 7472 6875 1 814 745 340 62 46 chr12 30128860 30129217 -91128313 + Lx8 LINE L1 5836 6197 -1276 1 814 399 41 0 0 chr12 30129217 30129266 -91128264 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 814 745 340 62 46 chr12 30129266 30129542 -91127988 + Lx8 LINE L1 6198 6479 -994 1 814 464 319 88 4 chr12 30130280 30130524 -91127006 + MTEa LTR MaLR 75 371 -8 1 814 238 335 59 18 chr12 30130561 30130731 -91126799 + L2 LINE L2 2316 2492 -927 1 814 733 250 28 47 chr12 30131046 30131260 -91126270 - B3 SINE B2 -2 214 5 1 814 24 32 0 0 chr12 30132011 30132042 -91125488 + AT_rich Low_complexity Low_complexity 1 31 0 1 814 423 0 0 0 chr12 30132136 30132183 -91125347 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 814 1886 179 22 19 chr12 30132500 30132864 -91124666 + MTC LTR MaLR 57 421 0 1 814 316 350 19 6 chr12 30133021 30133179 -91124351 - MLT1A0 LTR MaLR -205 160 1 1 814 410 276 259 63 chr12 30133179 30133485 -91124045 - L1MB8 LINE L1 -20 6158 5793 1 814 1432 282 148 86 chr12 30133739 30134486 -91123044 - L1MB8 LINE L1 -705 5473 4654 1 814 299 167 0 0 chr12 30134486 30134540 -91122990 + MTD LTR MaLR 366 419 0 1 814 1432 282 148 86 chr12 30134540 30135400 -91122130 - L1MB8 LINE L1 -705 4653 3708 1 814 1835 196 77 5 chr12 30135440 30135830 -91121700 - MTC LTR MaLR -2 419 2 1 814 304 218 81 0 chr12 30136130 30136217 -91121313 + L1MA9 LINE L1 6210 6303 -9 1 814 27 0 0 0 chr12 30136569 30136596 -91120934 + AT_rich Low_complexity Low_complexity 1 27 0 1 814 226 188 27 55 chr12 30138520 30138593 -91118937 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 1 814 422 296 41 14 chr12 30140097 30140112 -91117418 + ID_B1 SINE B4 73 219 -5 1 814 451 258 91 0 chr12 30140112 30140239 -91117291 + B1F1 SINE Alu 6 144 -5 1 814 510 17 0 0 chr12 30140239 30140298 -91117232 + (TATAA)n Simple_repeat Simple_repeat 4 62 0 1 814 257 252 74 50 chr12 30140939 30141060 -91116470 + RMER15 LTR ERVL 7 130 -445 1 814 347 216 92 56 chr12 30141082 30141224 -91116306 + RMER15 LTR ERVL 275 421 -154 1 814 645 235 8 0 chr12 30141759 30141891 -91115639 - B1_Mur1 SINE Alu -8 141 9 1 814 266 50 25 0 chr12 30143325 30143365 -91114165 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 1 814 1519 79 63 27 chr12 30143460 30143682 -91113848 - L1_Mus2 LINE L1 -102 6464 6235 1 814 533 65 0 0 chr12 30143682 30143759 -91113771 + L1_Mus2 LINE L1 6490 6566 0 1 814 450 53 0 0 chr12 30144522 30144579 -91112951 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 814 3457 44 2 46 chr12 30144598 30145055 -91112475 - L1_Mus1 LINE L1 0 6567 6131 1 815 504 225 39 0 chr12 30146902 30147031 -91110499 - ID_B1 SINE B4 0 224 91 1 815 382 302 119 69 chr12 30147226 30147486 -91110044 - B4A SINE B4 -18 274 2 1 815 222 156 0 0 chr12 30147505 30147550 -91109980 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 815 23 0 0 0 chr12 30147562 30147585 -91109945 + AT_rich Low_complexity Low_complexity 1 23 0 2 815 374 324 0 0 chr12 30149708 30149819 -91107711 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 815 935 158 0 17 chr12 30150335 30150515 -91107015 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 2 815 548 163 0 16 chr12 30150511 30150636 -91106894 + CT-rich Low_complexity Low_complexity 5 127 0 2 815 183 277 0 0 chr12 30150635 30150700 -91106830 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 815 558 288 62 21 chr12 30152278 30152569 -91104961 + Charlie5 DNA MER1_type 2239 2541 -83 2 815 339 268 26 18 chr12 30153450 30153564 -91103966 + CT-rich Low_complexity Low_complexity 4 118 0 2 815 334 336 9 0 chr12 30153576 30153692 -91103838 - PB1D10 SINE Alu 0 117 1 2 815 333 309 35 35 chr12 30154608 30154749 -91102781 + B4A SINE B4 2 142 -150 2 815 445 157 0 0 chr12 30154841 30154911 -91102619 + MTE2b LTR MaLR 276 345 -34 2 815 288 0 0 0 chr12 30154911 30154943 -91102587 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 815 513 220 201 14 chr12 30155123 30155261 -91102269 + B3A SINE B2 3 168 -30 2 815 978 112 191 31 chr12 30155261 30155455 -91102075 - URR1B DNA MER1_type 0 225 1 2 815 248 267 15 5 chr12 30155627 30155716 -91101814 - B1_Mur1 SINE Alu -10 139 17 2 815 21 0 0 0 chr12 30155726 30155747 -91101783 + AT_rich Low_complexity Low_complexity 1 21 0 2 815 258 289 89 0 chr12 30156717 30156807 -91100723 + MLT1A LTR MaLR 26 123 -251 2 815 295 189 117 107 chr12 30156882 30157078 -91100452 - RLTR12A LTR ERVK 0 568 371 2 815 590 247 82 70 chr12 30157109 30157353 -91100177 - RLTR11A2 LTR ERVK -280 247 1 2 815 292 349 29 29 chr12 30157674 30157845 -91099685 - L1MA6 LINE L1 -152 6148 5978 2 815 478 236 23 16 chr12 30158341 30158470 -91099060 + B1F1 SINE Alu 11 140 -9 2 815 39 0 0 0 chr12 30158661 30158700 -91098830 + AT_rich Low_complexity Low_complexity 1 39 0 2 815 600 239 124 39 chr12 30158849 30159310 -91098220 - L1MA4 LINE L1 -695 5605 5106 2 815 1376 286 67 36 chr12 30159308 30159939 -91097591 + L1MA4 LINE L1 5611 6260 -40 2 815 306 0 0 0 chr12 30161268 30161302 -91096228 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 815 2056 258 59 46 chr12 30162121 30162750 -91094780 - Lx9 LINE L1 -614 7030 6394 2 815 1548 243 62 5 chr12 30162754 30163143 -91094387 - MTD LTR MaLR -8 411 1 2 815 295 106 41 41 chr12 30163168 30163266 -91094264 + A-rich Low_complexity Low_complexity 5 102 0 2 815 37 23 0 0 chr12 30163354 30163398 -91094132 + AT_rich Low_complexity Low_complexity 1 44 0 2 815 2498 244 69 20 chr12 30163470 30163779 -91093751 - Lx9 LINE L1 -1569 6075 5723 2 815 456 19 0 0 chr12 30163779 30163832 -91093698 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 815 2498 217 56 9 chr12 30163832 30164352 -91093178 - Lx9 LINE L1 -125 5722 5173 2 815 843 246 149 31 chr12 30164395 30164776 -91092754 + Lx9 LINE L1 7069 7504 -140 2 815 186 103 0 0 chr12 30164776 30164805 -91092725 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2 815 843 241 80 45 chr12 30164805 30164945 -91092585 + Lx9 LINE L1 7505 7640 -4 2 815 513 0 0 0 chr12 30165456 30165513 -91092017 + (TGAG)n Simple_repeat Simple_repeat 4 60 0 2 815 1669 201 123 3 chr12 30166841 30167215 -91090315 + MTD LTR MaLR 1 419 0 2 815 25 90 0 0 chr12 30167377 30167444 -91090086 + AT_rich Low_complexity Low_complexity 1 67 0 2 815 305 215 0 0 chr12 30167600 30167665 -91089865 - L1MA5 LINE L1 -23 6277 6213 2 815 329 323 81 27 chr12 30167682 30167905 -91089625 - RMER5 LTR ERV1 -12 522 288 2 815 26 64 0 0 chr12 30168276 30168323 -91089207 + AT_rich Low_complexity Low_complexity 1 47 0 2 815 302 306 143 36 chr12 30168853 30168965 -91088565 + RMER20B LTR ERVK 2 125 -502 2 815 183 266 0 0 chr12 30172642 30172706 -91084824 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 815 599 297 84 53 chr12 30172833 30173096 -91084434 + MER44B DNA MER2_type 160 430 -120 2 815 30607 93 40 10 chr12 30173105 30174763 -91082767 + L1Md_F LINE L1 387 2123 -3760 2 815 1085 201 141 49 chr12 30174763 30175067 -91082463 + IAPEY3_LTR LTR ERVK 1 332 0 2 815 30607 67 7 17 chr12 30175067 30175942 -91081588 + L1Md_F LINE L1 2124 2997 -2886 2 815 183 42 0 0 chr12 30175942 30175966 -91081564 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 815 30607 67 7 17 chr12 30175966 30177103 -91080427 + L1Md_F LINE L1 2998 4075 -1808 2 815 4393 43 0 6 chr12 30177103 30177121 -91080409 - L1Md_F3 LINE L1 -14 6570 6554 2 815 236 30 30 0 chr12 30177121 30177154 -91080376 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 815 4393 43 0 6 chr12 30177154 30177670 -91079860 - L1Md_F3 LINE L1 -31 6553 6039 2 815 30607 67 7 17 chr12 30177670 30178895 -91078635 + L1Md_F LINE L1 4076 5302 -581 2 815 12093 67 7 1 chr12 30178895 30181068 -91076462 + L1Md_F2 LINE L1 4368 6559 -23 2 815 396 0 0 0 chr12 30181069 30181113 -91076417 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 815 335 311 179 40 chr12 30181122 30181373 -91076157 + B4A SINE B4 2 287 -5 2 815 459 0 0 0 chr12 30181393 30181444 -91076086 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 815 270 0 0 0 chr12 30181446 30181476 -91076054 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 815 409 294 0 43 chr12 30181655 30181843 -91075687 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 2 815 16579 113 96 12 chr12 30184215 30189435 -91068095 - L1_Mus4 LINE L1 -6 6630 411 2 815 719 127 13 13 chr12 30189548 30189700 -91067830 + (TCCA)n Simple_repeat Simple_repeat 2 153 0 2 815 566 93 18 18 chr12 30189757 30189867 -91067663 + (TCCA)n Simple_repeat Simple_repeat 3 112 0 2 815 461 314 74 74 chr12 30190101 30190304 -91067226 - B4A SINE B4 -2 290 88 2 815 346 161 49 0 chr12 30190310 30190391 -91067139 + CT-rich Low_complexity Low_complexity 1 85 0 2 815 234 62 0 0 chr12 30190391 30190423 -91067107 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2 815 2092 221 12 10 chr12 30190424 30190835 -91066695 - Lx5 LINE L1 -4 7046 6635 2 815 250 310 35 0 chr12 30190959 30191072 -91066458 - HAL1 LINE L1 -223 2284 2168 2 815 797 232 77 0 chr12 30191680 30191874 -91065656 + B3 SINE B2 6 214 -2 2 815 389 287 101 24 chr12 30192444 30192740 -91064790 - HAL1 LINE L1 -1349 1158 840 2 815 280 302 118 28 chr12 30193699 30193954 -91063576 + L1MD3 LINE L1 6674 6951 -1044 2 815 477 0 0 0 chr12 30194488 30194541 -91062989 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 815 1253 249 106 5 chr12 30194757 30195136 -91062394 + MTD LTR MaLR 3 419 0 2 815 528 297 32 54 chr12 30195155 30195340 -91062190 - Lx8 LINE L1 -128 7345 7165 2 815 186 43 0 0 chr12 30195449 30195472 -91062058 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 815 1620 219 79 8 chr12 30198236 30198617 -91058913 + MTD LTR MaLR 11 418 -1 2 815 1108 285 62 24 chr12 30198979 30199320 -91058210 - ORR1E LTR MaLR -5 354 1 2 815 544 263 105 7 chr12 30199603 30199756 -91057774 + B3A SINE B2 6 173 -25 2 815 369 43 0 0 chr12 30199764 30199811 -91057719 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 815 503 268 48 109 chr12 30200310 30200708 -91056822 - RLTR11B LTR ERVK -63 378 1 2 815 457 292 94 17 chr12 30200855 30201036 -91056494 - B3A SINE B2 -1 197 3 2 815 1701 154 112 56 chr12 30201279 30201637 -91055893 + ORR1C1 LTR MaLR 1 378 0 2 815 645 161 0 0 chr12 30201793 30201923 -91055607 + CT-rich Low_complexity Low_complexity 1 130 0 2 815 469 227 45 13 chr12 30201932 30202016 -91055514 + (TCTCTG)n Simple_repeat Simple_repeat 3 90 0 2 815 234 0 0 0 chr12 30202016 30202042 -91055488 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 815 469 227 45 13 chr12 30202042 30202113 -91055417 + (TCTCTG)n Simple_repeat Simple_repeat 3 74 0 2 815 3046 61 5 30 chr12 30204758 30205164 -91052366 - MTA_Mm LTR MaLR 0 396 1 2 815 613 331 5 0 chr12 30205908 30206092 -91051438 + MTE2a-int LTR MaLR 215 399 -1181 2 815 2478 284 153 10 chr12 30206088 30207005 -91050525 + MTE2a-int LTR MaLR 529 1576 -4 2 815 1398 217 22 19 chr12 30207014 30207333 -91050197 + MTE2a LTR MaLR 10 329 -50 2 815 1039 328 24 0 chr12 30207693 30208062 -91049468 - MTEa LTR MaLR -1 378 1 2 815 2169 283 137 5 chr12 30208065 30208801 -91048729 - MTEa-int LTR MaLR -3 1577 745 2 815 306 210 30 10 chr12 30208821 30208922 -91048608 - Lx9 LINE L1 0 7644 7542 2 815 439 285 41 14 chr12 30208941 30209087 -91048443 - MTEa-int LTR MaLR -835 745 596 2 815 502 148 0 0 chr12 30209090 30209171 -91048359 - MTE2b LTR MaLR -298 81 1 2 815 639 0 0 0 chr12 30209657 30209728 -91047802 + (TTTTG)n Simple_repeat Simple_repeat 3 73 0 2 815 1135 52 0 0 chr12 30209728 30209864 -91047666 - B1_Mus2 SINE Alu -11 136 1 2 815 680 35 11 0 chr12 30210171 30210258 -91047272 + (TC)n Simple_repeat Simple_repeat 2 89 0 2 815 633 27 0 0 chr12 30211282 30211357 -91046173 + (GA)n Simple_repeat Simple_repeat 1 75 0 2 815 266 255 0 0 chr12 30212253 30212304 -91045226 + (CG)n Simple_repeat Simple_repeat 1 51 0 2 815 202 132 0 26 chr12 30212692 30212731 -91044799 + A-rich Low_complexity Low_complexity 5 42 0 2 815 648 38 0 0 chr12 30212851 30212930 -91044600 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 815 26 0 0 0 chr12 30214256 30214282 -91043248 + AT_rich Low_complexity Low_complexity 1 26 0 2 815 21 0 0 0 chr12 30216479 30216500 -91041030 + AT_rich Low_complexity Low_complexity 1 21 0 2 815 657 0 0 0 chr12 30216974 30217047 -91040483 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 815 189 0 0 0 chr12 30217262 30217283 -91040247 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 815 205 341 0 22 chr12 30217476 30217566 -91039964 + CT-rich Low_complexity Low_complexity 6 93 0 2 815 233 238 16 0 chr12 30217571 30217634 -91039896 - Kanga1 DNA Tc2 -744 1001 938 2 815 191 61 0 29 chr12 30217646 30217680 -91039850 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 815 282 56 0 0 chr12 30218873 30218909 -91038621 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 815 522 0 0 0 chr12 30221485 30221543 -91035987 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 815 791 287 56 11 chr12 30226182 30226541 -91030989 + Lx9 LINE L1 7255 7629 -15 2 815 787 231 23 70 chr12 30228946 30229160 -91028370 - B3 SINE B2 -5 211 8 2 815 737 251 122 44 chr12 30229221 30229492 -91028038 + B4A SINE B4 1 292 0 2 815 328 238 112 56 chr12 30229979 30230086 -91027444 + PB1 SINE Alu 13 125 -2 2 815 236 320 27 0 chr12 30230095 30230170 -91027360 + ID4_ SINE ID 7 83 0 2 815 528 16 0 0 chr12 30230831 30230892 -91026638 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 815 393 22 0 0 chr12 30231914 30231960 -91025570 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 815 1392 186 58 114 chr12 30233445 30233840 -91023690 - ORR1D1 LTR MaLR 0 374 2 3 815 238 266 31 0 chr12 30234047 30234128 -91023402 - MTEa LTR MaLR -10 369 286 3 815 276 149 0 0 chr12 30235003 30235050 -91022480 + (GAAA)n Simple_repeat Simple_repeat 4 50 0 3 815 227 222 48 0 chr12 30235175 30235238 -91022292 + ID2 SINE ID 3 68 -15 3 815 620 291 74 0 chr12 30235793 30235968 -91021562 + ID_B1 SINE B4 32 219 -5 3 815 310 258 45 0 chr12 30236212 30236301 -91021229 + MER58A DNA MER1_type 35 127 -97 3 815 232 287 0 31 chr12 30239065 30239094 -91018436 + polypurine Low_complexity Low_complexity 4 31 0 3 815 749 90 9 0 chr12 30239094 30239205 -91018325 + (GGGA)n Simple_repeat Simple_repeat 2 113 0 3 815 232 287 0 31 chr12 30239205 30239272 -91018258 + GA-rich Low_complexity Low_complexity 32 97 0 3 815 315 0 0 0 chr12 30239665 30239700 -91017830 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 815 225 65 0 0 chr12 30240304 30240335 -91017195 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 815 324 316 0 0 chr12 30243594 30243708 -91013822 + GA-rich Low_complexity Low_complexity 3 116 0 3 815 629 112 20 0 chr12 30243710 30243808 -91013722 + B1_Mur3 SINE Alu 42 141 -8 3 815 211 182 0 0 chr12 30244200 30244233 -91013297 + (GTATG)n Simple_repeat Simple_repeat 1 33 0 3 815 410 266 11 0 chr12 30247063 30247157 -91010373 + PB1D7 SINE Alu 1 95 -25 3 815 336 48 0 0 chr12 30247179 30247221 -91010309 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 815 450 0 0 0 chr12 30249620 30249670 -91007860 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 815 270 0 0 0 chr12 30249670 30249699 -91007831 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 815 225 94 0 0 chr12 30249893 30249925 -91007605 + (CCA)n Simple_repeat Simple_repeat 1 32 0 3 815 511 62 12 12 chr12 30250089 30250170 -91007360 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 815 331 136 0 96 chr12 30250251 30250324 -91007206 - RSINE1 SINE B4 -87 78 13 3 815 801 300 46 32 chr12 30250510 30250792 -91006738 + B4 SINE B4 3 288 -4 3 815 197 255 0 46 chr12 30252558 30252650 -91004880 + MIR SINE MIR 109 199 -77 3 815 30 45 0 0 chr12 30252966 30253010 -91004520 + AT_rich Low_complexity Low_complexity 1 44 0 3 815 2540 77 9 0 chr12 30254856 30255180 -91002350 - ORR1A2 LTR MaLR 0 327 1 3 815 481 244 126 0 chr12 30256333 30256452 -91001078 - RSINE1 SINE B4 -8 157 24 3 815 207 233 16 48 chr12 30257421 30257484 -91000046 - L2 LINE L2 -357 3062 3002 3 815 1726 234 16 5 chr12 30258383 30258756 -90998774 - MTD LTR MaLR 0 419 43 3 815 239 218 51 101 chr12 30259472 30259610 -90997920 + ORR1E LTR MaLR 77 207 -152 3 815 264 318 58 8 chr12 30259880 30260061 -90997469 + MLT1A LTR MaLR 208 408 0 3 815 380 299 32 116 chr12 30260177 30260308 -90997222 + RSINE1 SINE B4 24 142 -23 3 815 243 0 0 0 chr12 30260308 30260335 -90997195 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 815 380 299 32 116 chr12 30260335 30260358 -90997172 + RSINE1 SINE B4 143 165 0 3 815 24 0 0 0 chr12 30260392 30260416 -90997114 + AT_rich Low_complexity Low_complexity 1 24 0 3 815 468 0 0 0 chr12 30262625 30262677 -90994853 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 815 930 279 28 18 chr12 30262701 30262986 -90994544 - B4 SINE B4 -4 288 1 3 815 1327 105 26 0 chr12 30263920 30264110 -90993420 - B2_Mm2 SINE B2 0 195 1 3 815 1589 311 32 44 chr12 30264268 30264901 -90992629 - Lx9 LINE L1 -174 7470 6846 3 815 198 236 66 22 chr12 30265721 30265812 -90991718 + MIR SINE MIR 50 144 -64 3 815 182 37 37 0 chr12 30266063 30266090 -90991440 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 815 426 108 0 0 chr12 30266091 30266156 -90991374 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 815 421 310 121 0 chr12 30269014 30269188 -90988342 + B3A SINE B2 3 197 -1 3 815 1518 319 93 36 chr12 30269525 30270184 -90987346 + L1MA6 LINE L1 4477 5178 -702 3 815 1453 70 16 0 chr12 30270184 30270370 -90987160 + B2_Mm2 SINE B2 1 189 -6 3 815 1518 319 93 34 chr12 30270370 30271057 -90986473 + L1MA6 LINE L1 5179 5938 -362 3 815 274 304 0 0 chr12 30271063 30271155 -90986375 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 815 255 133 0 0 chr12 30271596 30271641 -90985889 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 3 815 741 23 0 0 chr12 30272161 30272248 -90985282 + (TTC)n Simple_repeat Simple_repeat 2 88 0 3 815 1061 80 15 0 chr12 30272259 30272396 -90985134 - B1_Mus2 SINE Alu -8 139 1 3 815 243 164 0 0 chr12 30272893 30272954 -90984576 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 815 330 26 0 0 chr12 30272959 30272998 -90984532 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 815 464 269 112 20 chr12 30274358 30274698 -90982832 - L1MA9 LINE L1 0 6312 5856 3 815 603 147 0 0 chr12 30274866 30274968 -90982562 + (CTA)n Simple_repeat Simple_repeat 3 104 0 3 815 840 121 23 0 chr12 30274980 30275112 -90982418 - B1_Mur3 SINE Alu -8 141 7 3 815 476 229 62 35 chr12 30275598 30275743 -90981787 - RSINE1 SINE B4 -2 163 15 3 815 1321 111 16 0 chr12 30275782 30275972 -90981558 - B2_Mm2 SINE B2 -1 194 2 3 815 687 199 0 0 chr12 30276687 30276962 -90980568 + (CA)n Simple_repeat Simple_repeat 1 275 0 3 816 625 222 129 3 chr12 30278127 30278306 -90979224 + B3 SINE B2 7 211 -5 3 816 21 57 0 0 chr12 30278307 30278342 -90979188 + AT_rich Low_complexity Low_complexity 1 35 0 3 816 270 0 0 0 chr12 30278970 30279000 -90978530 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 3 816 768 141 11 6 chr12 30279000 30279178 -90978352 + CT-rich Low_complexity Low_complexity 2 180 0 3 816 435 19 0 0 chr12 30279178 30279230 -90978300 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 816 324 114 33 22 chr12 30279630 30279720 -90977810 + (TCTCTG)n Simple_repeat Simple_repeat 2 92 0 3 816 439 298 88 0 chr12 30281993 30282107 -90975423 + RSINE1 SINE B4 23 146 -19 3 816 421 223 9 18 chr12 30283753 30283867 -90973663 + L1MA4A LINE L1 5817 5929 -374 3 816 396 0 0 0 chr12 30283878 30283922 -90973608 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 816 844 48 10 0 chr12 30284107 30284211 -90973319 - L1_Mus2 LINE L1 -409 6157 6053 3 816 2543 55 81 9 chr12 30284212 30284559 -90972971 + L1_Mus2 LINE L1 6195 6566 0 3 816 753 278 151 27 chr12 30285081 30285373 -90972157 + ORR1E LTR MaLR 32 359 0 3 816 605 228 168 27 chr12 30286298 30286483 -90971047 - B3 SINE B2 -5 211 1 3 816 186 71 0 0 chr12 30287343 30287371 -90970159 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 816 335 292 84 7 chr12 30287391 30287546 -90969984 - L1MA4 LINE L1 -426 5874 5708 3 816 305 225 113 35 chr12 30287739 30287854 -90969676 - L1_Mm LINE L1 -648 5508 5356 3 816 257 333 21 21 chr12 30288390 30288531 -90968999 - MLT1A1 LTR MaLR 0 408 268 3 816 345 278 70 32 chr12 30288844 30289000 -90968530 - L1MA7 LINE L1 -397 5894 5733 3 816 197 183 217 0 chr12 30289109 30289169 -90968361 + MIRc SINE MIR 16 88 -180 3 816 294 276 100 54 chr12 30289318 30289448 -90968082 + MTEa LTR MaLR 1 136 -243 3 816 384 268 0 125 chr12 30290899 30291027 -90966503 + PB1D10 SINE Alu 3 114 -3 3 816 626 231 6 0 chr12 30292503 30292672 -90964858 + (TATG)n Simple_repeat Simple_repeat 2 171 0 3 816 21 36 0 0 chr12 30293351 30293379 -90964151 + AT_rich Low_complexity Low_complexity 1 28 0 3 816 30 59 0 0 chr12 30293425 30293476 -90964054 + AT_rich Low_complexity Low_complexity 1 51 0 3 816 401 206 0 9 chr12 30294233 30294341 -90963189 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 816 3401 275 71 28 chr12 30295201 30296304 -90961226 - Lx7 LINE L1 -422 7274 6125 3 816 318 106 0 0 chr12 30296385 30296432 -90961098 + (A)n Simple_repeat Simple_repeat 1 47 0 3 816 504 0 0 0 chr12 30298479 30298535 -90958995 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 816 310 314 87 5 chr12 30298690 30298898 -90958632 + Charlie7 DNA MER1_type 1499 1723 -889 3 816 1225 245 12 33 chr12 30298972 30299327 -90958203 - Lx2B LINE L1 0 6997 6613 3 816 1714 175 7 0 chr12 30299327 30299624 -90957906 + Lx3C LINE L1 6237 6535 -441 3 816 471 35 0 0 chr12 30299810 30299867 -90957663 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 816 303 299 52 7 chr12 30299996 30300131 -90957399 + Charlie7 DNA MER1_type 2171 2311 -301 3 816 366 80 0 0 chr12 30300459 30300509 -90957021 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 816 210 319 0 28 chr12 30300513 30300584 -90956946 - B4 SINE B4 -221 71 3 3 816 621 321 83 11 chr12 30301054 30301416 -90956114 + MER82 DNA MER2_type 70 457 -196 3 816 30 0 0 0 chr12 30301953 30301983 -90955547 + AT_rich Low_complexity Low_complexity 1 30 0 3 816 498 290 196 8 chr12 30302721 30302971 -90954559 + MLT1D LTR MaLR 192 488 -17 3 816 583 230 189 83 chr12 30304581 30304809 -90952721 - B4 SINE B4 -4 288 37 3 816 27 0 0 0 chr12 30305402 30305429 -90952101 + AT_rich Low_complexity Low_complexity 1 27 0 3 816 670 255 19 6 chr12 30305765 30305923 -90951607 - RSINE1 SINE B4 -1 164 5 3 816 452 288 34 0 chr12 30306096 30306214 -90951316 - B1F SINE Alu -26 123 2 3 816 1573 203 38 48 chr12 30307880 30308252 -90949278 - RLTR14 LTR ERV1 -3 379 12 3 816 678 326 51 29 chr12 30308274 30308688 -90948842 - RLTR14-int LTR ERV1 0 5317 4895 3 816 414 0 0 0 chr12 30312336 30312382 -90945148 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 816 183 80 0 0 chr12 30312510 30312535 -90944995 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 816 306 206 0 0 chr12 30312535 30312608 -90944922 - Charlie1b DNA MER1_type -158 365 293 4 816 228 226 38 0 chr12 30313094 30313147 -90944383 + B1F1 SINE Alu 5 59 -90 4 816 221 209 149 0 chr12 30313907 30313974 -90943556 - ID4 SINE ID -4 79 3 4 816 22 56 0 0 chr12 30314109 30314145 -90943385 + AT_rich Low_complexity Low_complexity 1 36 0 4 816 348 188 21 124 chr12 30314238 30314335 -90943195 + B4 SINE B4 2 88 -204 4 816 280 302 115 0 chr12 30314375 30314471 -90943059 + B1F2 SINE Alu 2 108 -41 4 816 748 224 116 32 chr12 30315395 30315584 -90941946 + B3 SINE B2 1 205 -11 4 816 848 297 51 0 chr12 30315594 30315850 -90941680 + B4A SINE B4 1 269 -23 4 816 531 0 0 0 chr12 30315856 30315915 -90941615 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 816 1001 253 42 34 chr12 30316145 30316623 -90940907 + MT2A LTR ERVL 3 489 -44 4 816 216 97 0 0 chr12 30316626 30316657 -90940873 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 4 816 346 103 0 0 chr12 30316683 30316751 -90940779 + MT2A LTR ERVL 466 533 0 4 816 423 265 88 36 chr12 30317180 30317317 -90940213 + ID_B1 SINE B4 81 224 0 4 816 561 299 150 8 chr12 30318773 30319019 -90938511 - B4 SINE B4 -2 290 10 4 816 206 176 20 0 chr12 30319600 30319651 -90937879 + GA-rich Low_complexity Low_complexity 1 52 0 4 816 1174 47 0 33 chr12 30319795 30319939 -90937591 + B1_Mus1 SINE Alu 1 142 -6 4 816 183 80 0 0 chr12 30319939 30319964 -90937566 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 816 325 338 5 10 chr12 30323301 30323467 -90934063 + MTE2a LTR MaLR 8 171 -248 4 816 270 20 19 75 chr12 30323857 30323910 -90933620 + (TTG)n Simple_repeat Simple_repeat 2 51 0 4 816 525 241 73 90 chr12 30323980 30324213 -90933317 + MTE2a LTR MaLR 145 373 -6 4 816 1580 246 40 78 chr12 30325148 30325646 -90931884 - Lx6 LINE L1 0 7460 6982 4 816 2296 157 33 0 chr12 30326124 30326519 -90931011 + MTC LTR MaLR 10 417 -4 4 816 212 305 0 24 chr12 30326623 30326707 -90930823 + (TATG)n Simple_repeat Simple_repeat 1 82 0 4 816 240 222 0 0 chr12 30326626 30326680 -90930850 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 816 531 0 0 0 chr12 30327099 30327158 -90930372 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 816 259 333 9 9 chr12 30327179 30327291 -90930239 + (TG)n Simple_repeat Simple_repeat 1 112 0 4 816 423 165 0 0 chr12 30327342 30327427 -90930103 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 816 195 42 0 0 chr12 30328597 30328621 -90928909 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 4 816 986 138 0 0 chr12 30328621 30328766 -90928764 - B1_Mus1 SINE Alu -2 146 2 4 816 252 122 0 0 chr12 30328784 30328825 -90928705 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 4 816 213 121 0 0 chr12 30328863 30328896 -90928634 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 816 304 200 18 0 chr12 30328928 30328983 -90928547 - RSINE1 SINE B4 -22 143 88 4 816 745 192 7 17 chr12 30330589 30330888 -90926642 + (TATATG)n Simple_repeat Simple_repeat 1 296 0 4 816 252 214 41 41 chr12 30331245 30331318 -90926212 - PB1D7 SINE Alu -2 118 46 4 816 381 22 0 0 chr12 30331562 30331608 -90925922 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 816 509 228 223 30 chr12 30332392 30332697 -90924833 - MTEa LTR MaLR -15 364 1 4 816 262 173 61 38 chr12 30335517 30335649 -90921881 + GA-rich Low_complexity Low_complexity 1 135 0 4 816 924 9 0 0 chr12 30335663 30335768 -90921762 + (GGGA)n Simple_repeat Simple_repeat 2 106 0 4 816 240 35 0 0 chr12 30336162 30336191 -90921339 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 816 244 279 30 37 chr12 30336364 30336528 -90921002 + (TATG)n Simple_repeat Simple_repeat 1 163 0 4 816 212 0 36 0 chr12 30337719 30337747 -90919783 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 816 1446 252 126 31 chr12 30338168 30338690 -90918840 - MTEa-int LTR MaLR -978 531 2 4 816 500 263 116 60 chr12 30338691 30339009 -90918521 - MTEa LTR MaLR -2 377 16 4 816 221 167 0 0 chr12 30341531 30341573 -90915957 + A-rich Low_complexity Low_complexity 1 42 0 4 816 392 227 6 0 chr12 30341583 30341759 -90915771 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 816 423 233 0 0 chr12 30341799 30341975 -90915555 + (TG)n Simple_repeat Simple_repeat 2 177 0 4 816 634 282 26 37 chr12 30342009 30342251 -90915279 - B4 SINE B4 -1 291 48 4 816 212 0 0 35 chr12 30342293 30342322 -90915208 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 4 816 1153 174 50 0 chr12 30344676 30344877 -90912653 + URR1B DNA MER1_type 8 218 -7 4 816 1592 226 62 35 chr12 30347027 30347431 -90910099 - MTD LTR MaLR 0 419 5 4 816 766 307 69 38 chr12 30347450 30347711 -90909819 + B4 SINE B4 6 274 -18 4 816 483 182 16 8 chr12 30348615 30348737 -90908793 + CT-rich Low_complexity Low_complexity 2 124 0 4 816 255 191 0 0 chr12 30348766 30348834 -90908696 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 816 411 38 0 0 chr12 30348869 30348922 -90908608 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 816 533 50 25 0 chr12 30348922 30349001 -90908529 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 4 816 698 321 54 11 chr12 30349025 30349305 -90908225 - B4 SINE B4 0 292 1 4 816 333 0 0 0 chr12 30349796 30349833 -90907697 + (A)n Simple_repeat Simple_repeat 1 37 0 4 816 23 0 0 0 chr12 30350170 30350193 -90907337 + AT_rich Low_complexity Low_complexity 1 23 0 4 816 396 0 0 0 chr12 30350945 30350989 -90906541 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 816 442 0 35 0 chr12 30351611 30351669 -90905861 + (CATA)n Simple_repeat Simple_repeat 2 61 0 4 816 377 336 48 14 chr12 30352005 30352150 -90905380 - Tigger16b DNA Tigger -4 333 184 4 816 492 246 35 0 chr12 30353392 30353506 -90904024 + B1F SINE Alu 20 137 -12 4 816 450 0 0 0 chr12 30354048 30354098 -90903432 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 816 616 40 50 0 chr12 30354792 30354892 -90902638 + (TAGA)n Simple_repeat Simple_repeat 3 107 0 4 816 546 341 68 15 chr12 30355055 30355320 -90902210 - B4A SINE B4 -12 280 2 4 816 590 230 57 82 chr12 30355669 30355863 -90901667 + B3A SINE B2 9 197 -1 4 816 32 26 0 0 chr12 30356225 30356264 -90901266 + AT_rich Low_complexity Low_complexity 1 39 0 4 816 228 295 188 30 chr12 30356663 30356796 -90900734 - RMER30 DNA MER1_type -42 160 7 4 816 263 293 24 12 chr12 30358346 30358429 -90899101 - MLT1A LTR MaLR -211 163 80 4 816 238 226 57 0 chr12 30358577 30358630 -90898900 - ID4_ SINE ID -4 79 24 4 816 373 311 51 37 chr12 30358652 30358801 -90898729 - ID_B1 SINE B4 -3 221 74 4 816 567 0 0 0 chr12 30358801 30358864 -90898666 + (TTTTG)n Simple_repeat Simple_repeat 5 67 0 4 816 373 311 51 37 chr12 30358864 30358931 -90898599 - ID SINE ID -151 73 3 4 816 922 142 35 0 chr12 30359200 30359341 -90898189 - B1_Mus2 SINE Alu -1 146 1 4 816 678 174 231 22 chr12 30359685 30359867 -90897663 - URR1B DNA MER1_type -1 224 5 4 816 183 100 0 0 chr12 30360018 30360048 -90897482 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 816 387 0 0 0 chr12 30360408 30360451 -90897079 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 816 564 259 31 26 chr12 30361910 30362104 -90895426 + L1MA4 LINE L1 5736 5930 -370 4 816 189 195 0 0 chr12 30362323 30362364 -90895166 + (TATG)n Simple_repeat Simple_repeat 2 42 0 4 816 300 372 100 26 chr12 30363275 30363695 -90893835 - L1M4 LINE L1 -961 5185 4735 4 816 309 311 148 37 chr12 30363997 30364267 -90893263 - L1M4 LINE L1 -1814 4332 4033 4 816 528 283 22 7 chr12 30365010 30365149 -90892381 + ID_B1 SINE B4 82 222 -2 4 816 342 259 15 134 chr12 30365579 30365713 -90891817 - PB1 SINE Alu 0 127 10 4 816 252 391 29 36 chr12 30367331 30367469 -90890061 - L2b LINE L2 -2 3373 3237 4 816 24 0 0 0 chr12 30368936 30368960 -90888570 + AT_rich Low_complexity Low_complexity 1 24 0 4 816 1194 288 84 3 chr12 30369803 30370138 -90887392 - MTEa LTR MaLR 0 379 18 4 816 23 33 0 0 chr12 30370820 30370850 -90886680 + AT_rich Low_complexity Low_complexity 1 30 0 4 816 770 190 7 0 chr12 30372063 30372200 -90885330 - B1_Mur2 SINE Alu 0 149 12 4 816 278 257 9 114 chr12 30372110 30372224 -90885306 - MT2B2 LTR ERVL -330 254 153 4 816 21 36 0 0 chr12 30372483 30372511 -90885019 + AT_rich Low_complexity Low_complexity 1 28 0 4 816 399 41 0 0 chr12 30372517 30372566 -90884964 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 816 306 275 0 168 chr12 30372578 30372709 -90884821 - RSINE1 SINE B4 -54 111 3 4 816 525 158 0 0 chr12 30373428 30373548 -90883982 + GA-rich Low_complexity Low_complexity 1 120 0 4 816 205 302 47 70 chr12 30374018 30374146 -90883384 + L2b LINE L2 3248 3372 -3 4 816 30 0 0 0 chr12 30374154 30374184 -90883346 + AT_rich Low_complexity Low_complexity 1 30 0 4 816 231 283 106 21 chr12 30374643 30374737 -90882793 + LTR79 LTR ERVL 401 502 -25 4 816 245 300 12 12 chr12 30376985 30377066 -90880464 - L2 LINE L2 -1367 2052 1972 4 816 495 0 0 0 chr12 30377528 30377583 -90879947 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 816 441 219 182 0 chr12 30378405 30378542 -90878988 + RMER20B LTR ERVK 112 273 -354 4 816 2780 172 44 8 chr12 30378587 30378804 -90878726 + Lx LINE L1 6128 6351 -303 4 816 279 0 0 0 chr12 30378804 30378835 -90878695 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 816 2780 172 44 8 chr12 30378835 30379114 -90878416 + Lx LINE L1 6352 6642 -12 4 816 181 250 0 111 chr12 30379683 30379755 -90877775 - MIRb SINE MIR -56 212 149 4 816 377 123 15 0 chr12 30379952 30380017 -90877513 + (GGAAA)n Simple_repeat Simple_repeat 3 68 0 4 816 234 0 0 0 chr12 30380873 30380899 -90876631 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 816 219 263 35 0 chr12 30384257 30384314 -90873216 - MIRb SINE MIR -38 230 172 4 816 222 174 0 0 chr12 30384318 30384364 -90873166 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 4 816 531 160 19 19 chr12 30385170 30385329 -90872201 + (AGGTG)n Simple_repeat Simple_repeat 4 162 0 4 816 354 171 16 31 chr12 30385392 30385519 -90872011 + (AGGTG)n Simple_repeat Simple_repeat 3 127 0 4 816 353 173 16 92 chr12 30385530 30385749 -90871781 + (AGGTG)n Simple_repeat Simple_repeat 1 202 0 4 816 1260 84 0 0 chr12 30385834 30386013 -90871517 + (AGGTG)n Simple_repeat Simple_repeat 1 179 0 4 816 260 351 52 35 chr12 30387240 30387355 -90870175 - MER20 DNA MER1_type -78 141 25 5 816 1179 43 0 0 chr12 30389068 30389206 -90868324 - B1_Mm SINE Alu -9 138 1 5 816 243 187 92 13 chr12 30389375 30389451 -90868079 - MIRc SINE MIR -119 149 68 5 816 520 335 120 52 chr12 30390063 30390598 -90866932 - Lx8 LINE L1 -7 7466 6896 5 816 1864 194 26 31 chr12 30390647 30391068 -90866462 - MTD LTR MaLR 0 419 1 5 816 815 307 8 8 chr12 30391092 30391333 -90866197 - Lx8 LINE L1 -628 6845 6595 5 816 693 223 216 12 chr12 30393583 30393837 -90863693 - MTEa LTR MaLR -69 310 5 5 816 567 277 28 0 chr12 30394591 30394732 -90862798 - MTE2b LTR MaLR -233 146 2 5 816 499 229 83 26 chr12 30395257 30395450 -90862080 - L1M4 LINE L1 -1480 5164 4961 5 816 491 192 141 0 chr12 30395458 30395557 -90861973 + B1_Mur3 SINE Alu 9 121 -28 5 816 185 0 0 39 chr12 30395560 30395586 -90861944 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 816 262 316 224 12 chr12 30395729 30395899 -90861631 - MLT1A0 LTR MaLR -2 363 158 5 816 576 288 105 95 chr12 30396051 30397143 -90860387 - L1M4 LINE L1 -1807 4837 3735 5 816 511 301 55 83 chr12 30397229 30397555 -90859975 + ORR1E LTR MaLR 34 350 -9 5 816 390 42 0 0 chr12 30397614 30397662 -90859868 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 816 546 29 0 0 chr12 30397662 30397730 -90859800 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 816 23 86 0 0 chr12 30398587 30398645 -90858885 + AT_rich Low_complexity Low_complexity 1 58 0 5 816 820 244 24 0 chr12 30398924 30399129 -90858401 - B3 SINE B2 -6 210 1 5 816 3408 239 33 33 chr12 30399491 30400456 -90857074 + RCHARR1 DNA MER1_type 8 972 -2 5 816 367 296 141 84 chr12 30400591 30401132 -90856398 - L1M4 LINE L1 -4905 1741 1161 5 816 501 32 0 0 chr12 30401248 30401311 -90856219 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 816 295 258 123 53 chr12 30403533 30403797 -90853733 + ORR1E LTR MaLR 58 370 -9 5 816 1187 207 91 15 chr12 30403869 30404134 -90853396 - Lx5 LINE L1 0 7050 6766 5 816 210 37 0 0 chr12 30404372 30404399 -90853131 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 816 216 303 30 0 chr12 30404651 30404717 -90852813 - ID4_ SINE ID -8 75 8 5 816 1218 216 222 12 chr12 30405332 30405674 -90851856 + MTD LTR MaLR 5 418 -1 5 816 3386 231 92 79 chr12 30405679 30406917 -90850613 + MTD-int LTR MaLR 5 1258 0 5 816 1522 207 101 14 chr12 30406917 30407274 -90850256 + MTD LTR MaLR 1 388 -31 5 816 465 158 0 0 chr12 30407605 30407687 -90849843 + (TTG)n Simple_repeat Simple_repeat 2 83 0 5 817 372 321 75 103 chr12 30409196 30409488 -90848042 - B4 SINE B4 -8 284 1 5 817 206 267 0 16 chr12 30409683 30409744 -90847786 + GA-rich Low_complexity Low_complexity 2 61 0 5 817 275 272 112 21 chr12 30409886 30410074 -90847456 + Charlie21a DNA MER1_type 903 1107 -106 5 817 336 337 0 0 chr12 30410194 30410295 -90847235 - Lx8 LINE L1 -333 7140 7040 5 817 297 241 50 12 chr12 30410943 30411023 -90846507 - B4 SINE B4 -2 290 208 5 817 397 283 9 0 chr12 30411078 30411184 -90846346 - B4 SINE B4 -184 108 2 5 817 273 313 65 10 chr12 30411343 30411543 -90845987 + L1MD2 LINE L1 5122 5332 -814 5 817 726 316 81 26 chr12 30411686 30412240 -90845290 + L1MD2 LINE L1 5559 6141 -218 5 817 306 0 0 0 chr12 30412555 30412589 -90844941 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 817 360 0 0 0 chr12 30412589 30412629 -90844901 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 817 546 16 0 0 chr12 30413134 30413197 -90844333 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 817 1517 226 74 3 chr12 30413626 30414017 -90843513 + MTD LTR MaLR 1 419 0 5 817 1126 44 0 7 chr12 30414175 30414312 -90843218 + B1_Mm SINE Alu 1 136 -11 5 817 594 0 0 0 chr12 30414312 30414378 -90843152 + (CAAAA)n Simple_repeat Simple_repeat 3 68 0 5 817 1063 113 6 17 chr12 30414379 30414559 -90842971 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 817 624 253 88 135 chr12 30414901 30415285 -90842245 + MTE2a LTR MaLR 14 379 0 5 817 245 27 54 0 chr12 30415287 30415324 -90842206 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 817 428 301 98 28 chr12 30416583 30417160 -90840370 - L1MB3 LINE L1 -157 6026 5357 5 817 391 301 16 31 chr12 30417168 30417295 -90840235 + B1F1 SINE Alu 17 141 -8 5 817 571 326 68 46 chr12 30417378 30417831 -90839699 - L1MB3 LINE L1 -846 5294 4832 5 817 273 193 176 33 chr12 30417931 30418022 -90839508 - L1MB3 LINE L1 -1464 4676 4573 5 817 573 221 33 0 chr12 30418735 30418857 -90838673 + ID_B1 SINE B4 80 205 -19 5 817 315 0 0 0 chr12 30418864 30418899 -90838631 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 817 552 246 8 30 chr12 30420451 30420585 -90836945 - B1F SINE Alu -1 148 18 5 817 28 61 0 0 chr12 30420696 30420745 -90836785 + AT_rich Low_complexity Low_complexity 1 49 0 5 817 1261 256 69 9 chr12 30421755 30422090 -90835440 + RMER1B Other Other 10 364 -702 5 817 4056 232 118 4 chr12 30422109 30423163 -90834367 + RMER1A Other Other 48 1027 -3 5 817 457 279 61 15 chr12 30423688 30423819 -90833711 + ID_B1 SINE B4 82 218 -6 5 817 247 327 27 27 chr12 30424286 30424396 -90833134 + L1MC LINE L1 5695 5804 -2078 5 817 1069 253 53 50 chr12 30426147 30426526 -90831004 + MTD LTR MaLR 19 398 -21 5 817 242 351 54 0 chr12 30428950 30429061 -90828469 + PB1D10 SINE Alu 1 117 0 5 817 273 119 0 0 chr12 30429676 30429718 -90827812 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 817 863 295 9 0 chr12 30433194 30433418 -90824112 + B4A SINE B4 6 231 -61 5 817 359 274 204 11 chr12 30433420 30433601 -90823929 + B3 SINE B2 1 216 0 5 817 385 321 7 7 chr12 30433669 30433810 -90823720 + (CATATA)n Simple_repeat Simple_repeat 1 141 0 5 817 188 292 9 0 chr12 30433832 30433945 -90823585 + (CA)n Simple_repeat Simple_repeat 1 114 0 5 817 907 276 20 50 chr12 30434554 30434855 -90822675 + B4A SINE B4 1 292 0 5 817 362 271 118 24 chr12 30438646 30438816 -90818714 - MLT1C LTR MaLR -184 283 98 5 817 498 209 45 23 chr12 30438823 30438955 -90818575 - MLT1A1 LTR MaLR -3 405 271 5 817 682 254 21 21 chr12 30439070 30439263 -90818267 - MTEa LTR MaLR 0 379 187 5 817 226 238 32 0 chr12 30439261 30439324 -90818206 - MLT1C LTR MaLR -325 65 1 5 817 708 296 66 66 chr12 30441624 30441913 -90815617 + B4A SINE B4 2 290 -2 5 817 598 271 136 16 chr12 30442075 30442259 -90815271 - B3 SINE B2 -8 208 3 5 817 626 231 85 75 chr12 30443176 30443481 -90814049 + L1MA7 LINE L1 5956 6263 -28 5 817 628 281 58 0 chr12 30443515 30443686 -90813844 + B3A SINE B2 2 182 -16 5 817 552 264 0 0 chr12 30443688 30443851 -90813679 + (CA)n Simple_repeat Simple_repeat 1 163 0 5 817 819 307 118 30 chr12 30445725 30445940 -90811590 + MTE-int LTR MaLR 30 288 -1292 5 817 275 0 0 28 chr12 30445940 30445976 -90811554 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 5 817 819 307 118 30 chr12 30445976 30446193 -90811337 + MTE-int LTR MaLR 289 500 -1080 5 817 1824 312 58 60 chr12 30446437 30447173 -90810357 + MTE-int LTR MaLR 795 1529 -51 5 817 366 324 9 0 chr12 30447173 30447281 -90810249 + ORR1E LTR MaLR 3 111 -248 5 817 378 0 0 0 chr12 30447297 30447339 -90810191 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 817 363 286 33 0 chr12 30447552 30447643 -90809887 + B1F2 SINE Alu 13 106 -43 5 817 383 352 7 0 chr12 30447934 30448079 -90809451 - MTE-int LTR MaLR -27 1553 1408 5 817 305 43 0 42 chr12 30448217 30448265 -90809265 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 5 817 284 309 79 8 chr12 30448438 30448565 -90808965 - RMER15 LTR ERVL -16 559 424 5 817 799 270 77 91 chr12 30449050 30449425 -90808105 + ORR1D2 LTR MaLR 1 370 0 5 817 622 295 16 0 chr12 30449426 30449609 -90807921 + ORR1D2-int LTR MaLR 2 187 -1183 5 817 601 198 270 15 chr12 30449606 30449806 -90807724 + ORR1D2-int LTR MaLR 1259 1509 0 5 817 957 262 140 42 chr12 30449806 30449977 -90807553 + ORR1D2 LTR MaLR 1 165 -205 5 817 567 0 0 0 chr12 30449977 30450040 -90807490 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 817 279 0 0 0 chr12 30450040 30450070 -90807460 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 817 957 262 140 42 chr12 30450070 30450232 -90807298 + ORR1D2 LTR MaLR 166 367 -3 5 817 23 78 0 0 chr12 30451011 30451062 -90806468 + AT_rich Low_complexity Low_complexity 1 51 0 5 817 220 256 0 0 chr12 30451062 30451105 -90806425 + polypyrimidine Low_complexity Low_complexity 1 43 0 5 817 776 256 36 0 chr12 30454235 30454403 -90803127 - B3 SINE B2 -38 178 5 5 817 325 321 32 25 chr12 30454406 30454636 -90802894 - L1M4 LINE L1 -1129 5011 4783 5 817 372 285 234 0 chr12 30456158 30456295 -90801235 + ID_B1 SINE B4 19 187 -37 5 817 223 345 8 113 chr12 30456315 30456439 -90801091 + PB1D10 SINE Alu 1 111 -6 5 817 365 285 43 19 chr12 30458559 30458720 -90798810 + CT-rich Low_complexity Low_complexity 4 168 0 5 817 205 176 0 0 chr12 30459779 30459813 -90797717 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 817 300 279 198 0 chr12 30459842 30459953 -90797577 - RSINE1 SINE B4 -30 135 3 5 817 355 267 70 52 chr12 30460236 30460429 -90797101 - MIRm SINE MIR -69 193 5 5 817 405 0 0 0 chr12 30463472 30463517 -90794013 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 5 817 365 200 340 0 chr12 30465670 30465770 -90791760 + B1_Mur1 SINE Alu 2 135 -14 5 817 198 103 0 0 chr12 30465791 30465820 -90791710 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 817 213 154 0 0 chr12 30466982 30467021 -90790509 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 5 817 219 88 0 0 chr12 30468919 30468953 -90788577 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 5 817 681 13 0 0 chr12 30468969 30469047 -90788483 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 817 585 182 14 7 chr12 30470663 30470807 -90786723 + GA-rich Low_complexity Low_complexity 2 146 0 5 817 224 292 110 28 chr12 30472472 30472581 -90784949 - L4 LINE RTE -212 1817 1700 5 817 210 26 0 71 chr12 30475242 30475284 -90782246 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 817 372 94 0 0 chr12 30475422 30475475 -90782055 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 817 264 296 96 0 chr12 30476957 30477072 -90780458 + MER5A DNA MER1_type 41 166 -23 5 817 213 175 0 0 chr12 30481014 30481054 -90776476 + GA-rich Low_complexity Low_complexity 4 43 0 5 817 1781 172 84 14 chr12 30482931 30483290 -90774240 - ORR1C2 LTR MaLR 0 384 1 5 817 220 182 45 0 chr12 30483725 30483769 -90773761 + GA-rich Low_complexity Low_complexity 4 49 0 5 817 528 16 0 0 chr12 30484964 30485025 -90772505 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 817 582 179 0 0 chr12 30490300 30490434 -90767096 + CT-rich Low_complexity Low_complexity 1 134 0 6 817 895 100 7 7 chr12 30490926 30491077 -90766453 + (GAAAA)n Simple_repeat Simple_repeat 5 155 0 6 817 218 282 153 14 chr12 30491088 30491160 -90766370 + ID2 SINE ID 2 83 0 6 817 379 301 57 0 chr12 30492549 30492672 -90764858 + MER3 DNA MER1_type 19 148 -61 6 817 231 278 0 58 chr12 30496356 30496459 -90761071 + (ATG)n Simple_repeat Simple_repeat 3 99 0 6 817 321 213 0 0 chr12 30496487 30496595 -90760935 + GA-rich Low_complexity Low_complexity 1 108 0 6 817 270 0 0 0 chr12 30499172 30499202 -90758328 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 817 212 310 13 53 chr12 30503283 30503306 -90754224 + ID_B1 SINE B4 68 139 -85 1 817 214 208 0 77 chr12 30503306 30503358 -90754172 + B1_Mus2 SINE Alu 11 58 -89 2 817 180 0 0 0 chr12 30504199 30504219 -90753311 + (ATGTG)n Simple_repeat Simple_repeat 1 20 0 3 817 441 0 0 0 chr12 30504220 30504269 -90753261 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 817 900 282 63 63 chr12 30506659 30507026 -90750504 + MTEa LTR MaLR 1 367 -12 5 817 483 48 0 0 chr12 30507562 30507624 -90749906 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 817 1117 259 25 15 chr12 30509606 30509880 -90747650 - B4A SINE B4 0 292 16 7 817 269 270 81 0 chr12 30509884 30509958 -90747572 + RSINE1 SINE B4 78 157 -8 8 817 345 109 0 0 chr12 30514641 30514696 -90742834 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 817 577 286 0 39 chr12 30515828 30515981 -90741549 + B1F SINE Alu 2 148 -1 1 817 346 242 62 10 chr12 30519059 30519195 -90738335 + B1_Mus1 SINE Alu 1 132 -17 1 817 24 32 0 0 chr12 30524056 30524087 -90733443 + AT_rich Low_complexity Low_complexity 1 31 0 1 817 1170 74 0 0 chr12 30524436 30524584 -90732946 + B1_Mus1 SINE Alu 1 148 0 1 817 6576 87 43 10 chr12 30525425 30526373 -90731157 - L1_Mus3 LINE L1 -2 6636 5693 1 817 343 245 66 86 chr12 30527862 30528014 -90729516 + MER5B DNA MER1_type 1 149 -29 1 817 290 240 62 10 chr12 30530022 30530119 -90727411 + MER58B DNA MER1_type 67 168 -173 1 817 275 132 38 0 chr12 30532068 30532121 -90725409 + GA-rich Low_complexity Low_complexity 2 56 0 1 817 1352 56 6 0 chr12 30532131 30532309 -90725221 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 1 817 261 0 0 0 chr12 30532312 30532341 -90725189 + (GAGAA)n Simple_repeat Simple_repeat 1 29 0 1 817 308 250 0 29 chr12 30534131 30534234 -90723296 + (CAG)n Simple_repeat Simple_repeat 1 100 0 2 817 246 302 58 0 chr12 30534887 30534973 -90722557 - RSINE1 SINE B4 0 165 75 2 817 540 56 0 0 chr12 30535702 30535774 -90721756 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 817 551 74 12 0 chr12 30536125 30536206 -90721324 + (TGGA)n Simple_repeat Simple_repeat 1 82 0 2 817 404 267 0 0 chr12 30536991 30537081 -90720449 + PB1D10 SINE Alu 10 99 -18 2 817 576 292 76 21 chr12 30537360 30537598 -90719932 - B4A SINE B4 -41 251 1 2 817 547 174 59 22 chr12 30537621 30537635 -90719895 - ID_B1 SINE B4 0 224 204 2 817 263 0 81 0 chr12 30537635 30537672 -90719858 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2 817 547 174 59 22 chr12 30537672 30537792 -90719738 - ID_B1 SINE B4 -21 203 86 2 817 437 167 17 121 chr12 30537693 30537809 -90719721 - MT2B LTR ERVL -344 257 154 2 817 267 255 78 0 chr12 30537809 30537829 -90719701 - ORR1D2-int LTR MaLR -755 749 603 2 817 530 227 22 39 chr12 30538110 30538380 -90719150 - ORR1D2 LTR MaLR -7 363 13 2 817 24 0 0 0 chr12 30538506 30538530 -90719000 + AT_rich Low_complexity Low_complexity 1 24 0 3 818 426 65 0 0 chr12 30540530 30540592 -90716938 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 818 204 40 0 0 chr12 30542065 30542090 -90715440 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 818 323 257 27 0 chr12 30544366 30544440 -90713090 + B4 SINE B4 6 81 -211 3 818 252 0 0 0 chr12 30544441 30544469 -90713061 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 3 818 802 245 19 33 chr12 30545614 30545829 -90711701 - B3 SINE B2 -4 212 1 3 818 291 130 0 0 chr12 30545842 30545896 -90711634 + (A)n Simple_repeat Simple_repeat 1 54 0 3 818 212 162 27 0 chr12 30546551 30546588 -90710942 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 818 222 37 0 0 chr12 30547403 30547430 -90710100 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 3 818 232 228 36 48 chr12 30547480 30547563 -90709967 + MER3 DNA MER1_type 13 94 -115 3 818 522 290 30 24 chr12 30547592 30547758 -90709772 + ID_B1 SINE B4 7 173 -51 4 818 269 298 12 12 chr12 30547683 30547768 -90709762 + PB1D10 SINE Alu 18 102 -15 4 818 1078 103 7 0 chr12 30547979 30548125 -90709405 - B1_Mus1 SINE Alu 0 148 2 4 818 216 0 0 0 chr12 30548136 30548160 -90709370 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 818 513 0 0 0 chr12 30548665 30548722 -90708808 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 818 622 90 0 0 chr12 30549049 30549138 -90708392 + ORR1D1-int LTR MaLR 1282 1370 0 4 818 984 190 6 6 chr12 30549139 30549319 -90708211 + ORR1D1 LTR MaLR 2 181 -193 4 818 483 90 11 43 chr12 30549319 30549412 -90708118 + (TCTCCC)n Simple_repeat Simple_repeat 1 90 0 4 818 1078 198 5 0 chr12 30549413 30549620 -90707910 + ORR1D1 LTR MaLR 167 374 0 4 818 979 239 140 17 chr12 30550050 30550408 -90707122 - MTD LTR MaLR 0 419 18 4 818 262 177 12 25 chr12 30550951 30551032 -90706498 + (TTTG)n Simple_repeat Simple_repeat 4 83 0 4 818 1392 58 6 6 chr12 30551033 30551206 -90706324 - B2_Mm1t SINE B2 -19 174 2 4 818 356 296 52 17 chr12 30555039 30555204 -90702326 + MIRc SINE MIR 35 215 -53 5 818 735 207 20 14 chr12 30555485 30555632 -90701898 - B1_Mur3 SINE Alu -1 148 1 5 818 245 294 0 65 chr12 30556418 30556571 -90700959 + (CATATA)n Simple_repeat Simple_repeat 4 146 0 5 818 249 135 0 0 chr12 30556599 30556651 -90700879 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 818 297 183 0 0 chr12 30557686 30557746 -90699784 + CT-rich Low_complexity Low_complexity 4 63 0 5 818 1167 141 121 0 chr12 30560279 30560477 -90697053 - URR1A DNA MER1_type -3 223 2 5 818 182 333 41 51 chr12 30560860 30560958 -90696572 - L3 LINE CR1 -280 4209 4113 5 818 623 75 11 0 chr12 30561556 30561650 -90695880 + (TCC)n Simple_repeat Simple_repeat 1 95 0 5 818 514 248 9 0 chr12 30562049 30562162 -90695368 + PB1D10 SINE Alu 3 116 -1 5 818 278 301 68 0 chr12 30562592 30562695 -90694835 + PB1D9 SINE Alu 2 111 -9 5 818 364 269 55 46 chr12 30569909 30570090 -90687440 + B4 SINE B4 8 227 -65 6 818 387 0 0 0 chr12 30570090 30570133 -90687397 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 6 818 364 327 88 62 chr12 30570133 30570179 -90687351 + B4 SINE B4 228 282 -10 6 818 324 0 0 0 chr12 30570183 30570219 -90687311 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 818 351 315 197 29 chr12 30571733 30571972 -90685558 - MER31B LTR ERV1 -125 341 63 6 818 518 156 146 0 chr12 30572651 30572747 -90684783 + PB1D7 SINE Alu 3 112 -8 6 818 328 211 17 35 chr12 30572771 30572943 -90684587 + (TATG)n Simple_repeat Simple_repeat 2 170 0 6 818 2050 162 35 24 chr12 30573707 30574081 -90683449 - ORR1C1 LTR MaLR 0 378 1 6 818 270 0 0 0 chr12 30575484 30575514 -90682016 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 818 299 331 93 62 chr12 30576962 30577145 -90680385 + ID_B1 SINE B4 5 195 -29 6 818 315 0 0 0 chr12 30577145 30577180 -90680350 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 818 193 286 51 25 chr12 30577297 30577376 -90680154 - MIRm SINE MIR -5 271 191 7 818 459 260 182 17 chr12 30578890 30579066 -90678464 + ID_B1 SINE B4 2 206 -18 7 818 573 169 7 14 chr12 30579066 30579204 -90678326 + GA-rich Low_complexity Low_complexity 1 137 0 7 818 735 12 0 0 chr12 30580407 30580491 -90677039 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 7 818 657 287 29 84 chr12 30581102 30581410 -90676120 + B4A SINE B4 2 292 0 7 818 223 276 0 20 chr12 30581631 30581731 -90675799 + (TA)n Simple_repeat Simple_repeat 2 99 0 7 818 1099 255 14 134 chr12 30582090 30582575 -90674955 - RLTR11B LTR ERVK -26 427 1 7 818 182 227 192 39 chr12 30583747 30583825 -90673705 - L2c LINE L2 -5 3382 3293 7 818 243 222 0 0 chr12 30583991 30584036 -90673494 + C-rich Low_complexity Low_complexity 1 45 0 7 818 373 277 174 63 chr12 30584493 30584763 -90672767 - MLT1A LTR MaLR -50 324 25 7 818 577 232 225 6 chr12 30584768 30584950 -90672580 + ID_B1 SINE B4 1 222 -2 8 818 512 278 134 6 chr12 30584980 30585135 -90672395 + B3A SINE B2 9 174 -42 8 818 200 200 0 16 chr12 30585790 30585851 -90671679 + GA-rich Low_complexity Low_complexity 1 60 0 8 818 319 342 26 45 chr12 30586473 30586629 -90670901 + MER2 DNA MER2_type 25 177 -168 8 818 185 0 40 0 chr12 30586629 30586654 -90670876 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 818 641 299 56 42 chr12 30586658 30586871 -90670659 - B3A SINE B2 0 216 1 8 818 323 250 29 0 chr12 30586945 30587013 -90670517 + ID2 SINE ID 14 83 0 8 818 234 378 33 16 chr12 30587019 30587140 -90670390 + MER2 DNA MER2_type 220 342 -3 8 818 226 327 10 0 chr12 30587540 30587641 -90669889 + (TGG)n Simple_repeat Simple_repeat 1 102 0 8 818 275 26 0 49 chr12 30590431 30590472 -90667058 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 8 818 227 139 22 44 chr12 30591161 30591206 -90666324 - ID_B1 SINE B4 -3 221 178 8 818 397 289 28 56 chr12 30594455 30594598 -90662932 - ID_B1 SINE B4 0 224 86 9 818 725 303 39 68 chr12 30594617 30594897 -90662633 - MTEb LTR MaLR -107 272 1 9 818 210 71 0 0 chr12 30595336 30595364 -90662166 + (T)n Simple_repeat Simple_repeat 1 28 0 9 818 1261 41 0 0 chr12 30595364 30595511 -90662019 - B1_Mm SINE Alu 0 147 1 9 818 772 345 77 7 chr12 30596264 30596667 -90660863 - MER82 DNA MER2_type 0 653 223 9 818 411 292 43 14 chr12 30596717 30596856 -90660674 + B4A SINE B4 2 144 -148 9 818 279 239 113 17 chr12 30596841 30596956 -90660574 - MER82 DNA MER2_type -466 187 62 9 818 180 0 0 0 chr12 30598107 30598127 -90659403 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 818 284 316 21 0 chr12 30599294 30599389 -90658141 - B1F1 SINE Alu -52 97 1 9 818 843 110 34 165 chr12 30603582 30603788 -90653742 - ORR1C1 LTR MaLR -198 180 2 9 818 1060 204 32 0 chr12 30604117 30604333 -90653197 + URR1B DNA MER1_type 1 223 -2 9 818 26 0 0 0 chr12 30606937 30606963 -90650567 + AT_rich Low_complexity Low_complexity 1 26 0 1 818 393 58 0 0 chr12 30607189 30607241 -90650289 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 818 624 183 104 0 chr12 30609824 30609939 -90647591 - B1_Mus1 SINE Alu -21 127 1 1 818 475 238 30 96 chr12 30609939 30609983 -90647547 - MT2B LTR ERVL -436 165 131 1 818 216 0 0 0 chr12 30610325 30610349 -90647181 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 1 818 507 17 0 0 chr12 30610481 30610541 -90646989 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 818 1180 264 69 7 chr12 30610878 30611183 -90646347 + ORR1D2 LTR MaLR 1 324 -46 1 818 614 287 36 24 chr12 30611317 30611486 -90646044 + ID_B1 SINE B4 31 198 -26 1 818 271 257 0 51 chr12 30611496 30611574 -90645956 + GA-rich Low_complexity Low_complexity 4 77 0 1 818 1032 133 0 0 chr12 30612599 30612779 -90644751 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 818 933 137 0 0 chr12 30612793 30613010 -90644520 + (TG)n Simple_repeat Simple_repeat 1 217 0 1 818 785 200 20 7 chr12 30613524 30613670 -90643860 - B1_Mur2 SINE Alu -1 148 1 1 818 764 289 36 13 chr12 30614211 30614441 -90643089 + ID_B1 SINE B4 2 248 -44 1 818 216 238 0 0 chr12 30614441 30614483 -90643047 + GA-rich Low_complexity Low_complexity 2 43 0 1 818 879 271 47 19 chr12 30615661 30615917 -90641613 + RMER5 LTR ERV1 118 380 -154 1 818 421 307 8 42 chr12 30617075 30617194 -90640336 - PB1 SINE Alu 0 127 13 1 818 194 263 56 75 chr12 30617764 30617871 -90639659 + L4 LINE RTE 1724 1828 -201 1 818 206 328 15 15 chr12 30618140 30618208 -90639322 - MIR SINE MIR -56 152 85 1 818 225 289 0 0 chr12 30619669 30619721 -90637809 + (TGGG)n Simple_repeat Simple_repeat 4 55 0 1 818 625 156 48 0 chr12 30619774 30619941 -90637589 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 1 818 565 182 44 0 chr12 30619958 30620188 -90637342 + (TAGA)n Simple_repeat Simple_repeat 1 240 0 1 818 496 281 27 92 chr12 30620366 30620550 -90636980 - B4 SINE B4 -116 176 5 1 818 440 332 77 0 chr12 30620552 30620772 -90636758 - MLT2C1 LTR ERVL -160 237 1 1 818 274 240 77 39 chr12 30621470 30621574 -90635956 + MLT1F1 LTR MaLR 196 303 -266 1 818 635 316 124 27 chr12 30621726 30622064 -90635466 - MTEa LTR MaLR -8 371 1 1 818 582 227 61 30 chr12 30624690 30624822 -90632708 + RSINE1 SINE B4 2 137 -28 1 818 198 103 0 0 chr12 30624828 30624857 -90632673 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 1 818 22 35 0 0 chr12 30624873 30624902 -90632628 + AT_rich Low_complexity Low_complexity 1 29 0 1 818 269 146 54 18 chr12 30625256 30625312 -90632218 + ID4 SINE ID 10 67 -16 1 818 1169 228 120 77 chr12 30627733 30627989 -90629541 - ORR1D2 LTR MaLR 0 370 101 1 818 1233 48 0 0 chr12 30627989 30628135 -90629395 - B1_Mus2 SINE Alu 0 147 2 1 818 1169 228 120 77 chr12 30628135 30628229 -90629301 - ORR1D2 LTR MaLR -270 100 5 1 818 659 139 28 0 chr12 30628391 30628499 -90629031 - B1_Mur4 SINE Alu -34 116 6 1 818 450 288 25 19 chr12 30628646 30628798 -90628732 - MTD LTR MaLR -14 405 240 1 818 260 226 0 0 chr12 30628809 30628862 -90628668 + MERVL_2A-int LTR ERVL 4567 4619 -1142 1 818 370 165 136 25 chr12 30628923 30629004 -90628526 + MTD LTR MaLR 4 93 -326 1 818 1207 245 22 22 chr12 30629007 30629274 -90628256 - B4A SINE B4 0 292 26 1 818 248 298 11 152 chr12 30629134 30629312 -90628218 - B3A SINE B2 -45 153 1 1 818 384 271 115 46 chr12 30629738 30629955 -90627575 - L1MEc LINE L1 -6117 283 52 1 818 25 75 0 0 chr12 30631578 30631631 -90625899 + AT_rich Low_complexity Low_complexity 1 53 0 1 818 690 47 0 0 chr12 30631785 30631871 -90625659 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 1 818 1177 30 0 0 chr12 30631875 30632008 -90625522 - B1_Mus2 SINE Alu -14 133 1 1 818 351 158 60 12 chr12 30632070 30632237 -90625293 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 818 945 275 64 11 chr12 30632284 30632549 -90624981 - B4A SINE B4 -12 280 2 1 818 709 11 11 11 chr12 30632599 30632690 -90624840 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 1 818 917 214 180 25 chr12 30632699 30633016 -90624514 + ORR1D1 LTR MaLR 5 370 -4 1 818 212 239 0 0 chr12 30633020 30633066 -90624464 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 818 336 64 0 0 chr12 30633209 30633256 -90624274 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 818 450 285 34 20 chr12 30633673 30633820 -90623710 - B1F SINE Alu 0 149 1 1 818 932 329 102 36 chr12 30634020 30634490 -90623040 + MER82 DNA MER2_type 90 590 -63 1 818 234 0 0 0 chr12 30634831 30634857 -90622673 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1 818 1312 50 0 0 chr12 30634857 30635016 -90622514 - B2_Mm1t SINE B2 -33 160 2 1 818 408 20 0 0 chr12 30635095 30635144 -90622386 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 818 610 295 60 23 chr12 30635790 30636005 -90621525 + ID_B1 SINE B4 2 224 0 1 818 245 300 0 7 chr12 30636405 30636556 -90620974 + (CCCA)n Simple_repeat Simple_repeat 1 150 0 1 818 655 159 18 0 chr12 30636761 30636874 -90620656 + Lx5 LINE L1 6560 6674 -376 1 818 472 309 68 14 chr12 30637314 30637521 -90620009 + MLT2D LTR ERVL 3 220 -194 1 818 207 0 0 0 chr12 30638590 30638613 -90618917 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 818 633 200 43 22 chr12 30639975 30640113 -90617417 - MTE2a LTR MaLR 0 379 239 1 818 7986 37 1 0 chr12 30640171 30641333 -90616197 - L1Md_F2 LINE L1 0 6582 5419 1 818 541 296 45 105 chr12 30641333 30641533 -90615997 - MTE2a LTR MaLR -186 193 6 1 818 185 250 0 89 chr12 30642751 30642830 -90614700 + L3 LINE CR1 3329 3400 -1089 1 818 193 339 90 45 chr12 30643566 30643699 -90613831 + L4 LINE RTE 1722 1860 -169 1 818 245 75 25 0 chr12 30643829 30643869 -90613661 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 818 436 264 369 14 chr12 30643990 30644197 -90613333 - B4 SINE B4 -8 284 4 1 818 277 277 58 74 chr12 30644243 30644364 -90613166 - ORR1D2 LTR MaLR -2 377 259 1 818 422 285 71 120 chr12 30644389 30644672 -90612858 - ORR1D2 LTR MaLR -77 293 25 1 818 246 240 117 68 chr12 30644844 30644947 -90612583 - LTR40c LTR ERVL -68 451 344 1 818 615 287 35 12 chr12 30644971 30645140 -90612390 - LTR40c LTR ERVL -233 232 60 1 818 477 194 56 23 chr12 30646671 30646822 -90610708 + L1MA4 LINE L1 5805 5966 -205 1 818 565 191 8 22 chr12 30646982 30647116 -90610414 + RCHARR1 DNA MER1_type 741 872 -102 1 818 595 284 0 26 chr12 30648000 30648152 -90609378 - B1_Mur1 SINE Alu 0 149 2 1 818 2243 102 22 0 chr12 30648707 30649029 -90608501 - ORR1A4 LTR MaLR 0 329 1 1 818 318 250 0 97 chr12 30649685 30649778 -90607752 + RSINE1 SINE B4 53 136 -29 1 818 482 91 0 13 chr12 30649785 30649863 -90607667 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 818 354 204 124 41 chr12 30651429 30651495 -90606035 + Charlie21a DNA MER1_type 850 917 -296 1 818 1575 43 5 0 chr12 30651495 30651680 -90605850 - B2_Mm1t SINE B2 -7 186 1 1 818 354 204 124 41 chr12 30651680 30651807 -90605723 + Charlie21a DNA MER1_type 918 1059 -154 1 818 439 269 72 31 chr12 30651959 30652109 -90605421 + B4A SINE B4 2 161 -4 1 818 25 75 0 0 chr12 30652175 30652228 -90605302 + AT_rich Low_complexity Low_complexity 1 53 0 1 818 395 321 11 134 chr12 30652241 30652428 -90605102 - RSINE1 SINE B4 0 165 2 1 818 1625 87 5 14 chr12 30652758 30652980 -90604550 + MTB_Mm LTR MaLR 4 223 -177 1 818 3397 36 2 0 chr12 30652980 30653400 -90604130 + L1Md_F2 LINE L1 5165 5585 -298 1 818 8046 54 7 5 chr12 30653401 30654394 -90603136 + L1Md_F2 LINE L1 5587 6581 -1 1 818 1764 57 0 13 chr12 30654399 30654629 -90602901 + MTB_Mm LTR MaLR 181 407 0 1 818 212 211 39 0 chr12 30655548 30655600 -90601930 + C-rich Low_complexity Low_complexity 3 56 0 1 818 981 0 0 0 chr12 30655645 30655754 -90601776 + (TTTC)n Simple_repeat Simple_repeat 1 109 0 1 818 387 0 0 0 chr12 30655812 30655855 -90601675 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 818 310 221 94 19 chr12 30656192 30656298 -90601232 - MER5A DNA MER1_type -35 154 41 1 818 378 0 0 0 chr12 30657840 30657882 -90599648 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 818 389 143 177 52 chr12 30657904 30658000 -90599530 - RSINE1 SINE B4 -54 111 4 1 818 1516 232 220 8 chr12 30659036 30659518 -90598012 - RMER4B LTR ERVK -1 584 1 1 818 345 273 69 20 chr12 30660935 30661036 -90596494 + PB1D7 SINE Alu 1 106 -14 1 818 23 0 0 0 chr12 30661193 30661216 -90596314 + AT_rich Low_complexity Low_complexity 1 23 0 1 818 24 0 0 0 chr12 30661277 30661301 -90596229 + AT_rich Low_complexity Low_complexity 1 24 0 1 818 468 0 0 0 chr12 30662258 30662310 -90595220 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 818 28 0 0 0 chr12 30662964 30662992 -90594538 + AT_rich Low_complexity Low_complexity 1 28 0 1 818 266 267 54 54 chr12 30663570 30663681 -90593849 - MER58B DNA MER1_type -186 155 45 1 819 243 0 0 0 chr12 30671415 30671442 -90586088 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 819 517 285 16 0 chr12 30671448 30671571 -90585959 - ID_B1 SINE B4 -18 206 82 1 819 349 361 177 20 chr12 30673383 30673677 -90583853 + MER58B DNA MER1_type 2 341 0 1 819 337 324 48 29 chr12 30673750 30673855 -90583675 - L1M5 LINE L1 -3658 2488 2382 1 819 413 253 21 42 chr12 30673893 30673988 -90583542 - RSINE1 SINE B4 -4 161 69 1 819 23 0 0 0 chr12 30674556 30674579 -90582951 + AT_rich Low_complexity Low_complexity 1 23 0 1 819 440 276 104 86 chr12 30675158 30675427 -90582103 - B4 SINE B4 -18 274 1 1 819 395 189 221 0 chr12 30675994 30676089 -90581441 - PB1D10 SINE Alu -1 116 1 1 819 467 240 0 29 chr12 30676249 30676352 -90581178 - B4 SINE B4 -69 223 124 1 819 1483 242 44 126 chr12 30677441 30678014 -90579516 - RMER15 LTR ERVL -5 570 45 1 819 225 240 35 138 chr12 30678034 30678121 -90579409 - RMER15 LTR ERVL -483 92 15 1 819 330 132 0 0 chr12 30680319 30680372 -90577158 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 819 624 137 0 0 chr12 30680379 30680481 -90577049 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 2 819 1020 138 0 0 chr12 30680483 30680628 -90576902 - B1_Mus1 SINE Alu -2 146 2 2 819 22 0 0 0 chr12 30680639 30680661 -90576869 + AT_rich Low_complexity Low_complexity 1 22 0 2 819 675 271 90 88 chr12 30681552 30681928 -90575602 + MTE2a LTR MaLR 1 377 -2 2 819 624 214 35 28 chr12 30682953 30683071 -90574459 + B1_Mur1 SINE Alu 3 123 -26 2 819 595 87 15 45 chr12 30683071 30683204 -90574326 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 2 819 624 214 35 28 chr12 30683204 30683229 -90574301 + B1_Mur1 SINE Alu 124 147 -2 2 819 215 114 23 0 chr12 30683484 30683528 -90574002 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 819 180 0 0 0 chr12 30684180 30684200 -90573330 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 2 819 273 159 0 0 chr12 30685698 30685761 -90571769 + GA-rich Low_complexity Low_complexity 2 64 0 2 819 207 214 0 23 chr12 30689191 30689234 -90568296 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 819 414 0 0 0 chr12 30690344 30690390 -90567140 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 819 262 164 0 83 chr12 30690983 30691043 -90566487 - PB1D9 SINE Alu 0 120 66 2 819 921 150 0 16 chr12 30693001 30693184 -90564346 + CT-rich Low_complexity Low_complexity 1 180 0 2 819 288 130 0 0 chr12 30693189 30693235 -90564295 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 819 899 139 0 22 chr12 30693236 30693420 -90564110 + CT-rich Low_complexity Low_complexity 1 180 0 2 819 441 336 378 13 chr12 30694125 30694339 -90563191 - B4A SINE B4 0 292 1 2 819 544 274 224 56 chr12 30694615 30695168 -90562362 - L1MC4 LINE L1 -13 8029 7384 2 819 964 273 119 18 chr12 30697433 30697769 -90559761 - ORR1D2 LTR MaLR 0 370 1 2 819 774 250 0 136 chr12 30703050 30703263 -90554267 - B4A SINE B4 -82 210 27 2 819 214 267 106 14 chr12 30703561 30703655 -90553875 - MIR SINE MIR -70 138 38 2 819 680 275 18 64 chr12 30703778 30703949 -90553581 + RSINE1 SINE B4 3 165 0 2 819 289 211 0 22 chr12 30704534 30704552 -90552978 + A-rich Low_complexity Low_complexity 3 20 0 2 819 243 0 0 0 chr12 30704552 30704579 -90552951 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 819 289 211 0 22 chr12 30704579 30704652 -90552878 + A-rich Low_complexity Low_complexity 21 91 0 2 819 332 261 0 105 chr12 30708154 30708278 -90549252 + MT2B LTR ERVL 147 257 -344 2 819 811 222 0 0 chr12 30708179 30708323 -90549207 + B1_Mur3 SINE Alu 6 149 0 2 819 308 257 142 0 chr12 30708324 30708437 -90549093 + L1M4 LINE L1 5152 5280 -866 2 819 192 152 0 0 chr12 30708439 30708472 -90549058 + CT-rich Low_complexity Low_complexity 3 35 0 2 819 1303 161 100 0 chr12 30708817 30709116 -90548414 + Lx9 LINE L1 7316 7644 0 2 819 378 351 168 9 chr12 30709737 30710070 -90547460 + L1MEf LINE L1 1341 1726 -4516 2 819 338 341 93 43 chr12 30710487 30710907 -90546623 + L1MEf LINE L1 2137 2577 -3569 2 819 223 167 48 0 chr12 30710911 30710953 -90546577 + A-rich Low_complexity Low_complexity 2 45 0 2 819 188 260 179 13 chr12 30711590 30711668 -90545862 - MER5B DNA MER1_type 0 189 99 2 819 277 312 141 13 chr12 30712006 30712162 -90545368 + MER63A DNA AcHobo 26 201 -9 2 819 279 0 0 0 chr12 30712305 30712336 -90545194 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 819 319 274 13 94 chr12 30712426 30712535 -90544995 - B1F SINE Alu -1 148 50 2 819 315 71 0 0 chr12 30712535 30712577 -90544953 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 2 819 319 274 13 94 chr12 30712577 30712616 -90544914 - B1F SINE Alu -100 49 13 2 819 206 280 153 46 chr12 30713120 30713251 -90544279 + MIRb SINE MIR 85 229 -39 2 819 188 235 0 14 chr12 30713385 30713454 -90544076 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 819 21 36 0 0 chr12 30714924 30714952 -90542578 + AT_rich Low_complexity Low_complexity 1 28 0 2 819 327 204 36 125 chr12 30714952 30715064 -90542466 - MLT1A1 LTR MaLR 0 408 307 2 819 241 274 0 16 chr12 30715196 30715259 -90542271 - MLT1A1 LTR MaLR -314 94 33 2 819 270 307 153 0 chr12 30715888 30716038 -90541492 + MER5A DNA MER1_type 8 180 -9 2 819 361 274 17 17 chr12 30716088 30716203 -90541327 + PB1D10 SINE Alu 1 115 -2 2 819 216 304 58 0 chr12 30716226 30716295 -90541235 + ID4_ SINE ID 11 83 0 2 819 243 130 0 67 chr12 30718600 30718658 -90538872 - MT2A LTR ERVL 0 584 492 2 819 240 152 61 0 chr12 30718658 30718724 -90538806 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 819 1615 203 68 66 chr12 30718753 30719198 -90538332 - MT2A LTR ERVL -19 582 1 2 819 414 0 0 0 chr12 30720109 30720155 -90537375 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 819 1057 261 85 0 chr12 30720367 30720696 -90536834 - MLT1B LTR MaLR -17 373 17 2 819 336 83 0 0 chr12 30721426 30721474 -90536056 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 819 2444 164 7 19 chr12 30723111 30723534 -90533996 + MTC LTR MaLR 1 418 -3 2 819 423 0 0 0 chr12 30723990 30724037 -90533493 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 819 593 177 110 34 chr12 30725190 30725336 -90532194 + B2_Mm2 SINE B2 9 165 -30 2 819 305 218 128 0 chr12 30726346 30726424 -90531106 - Lx8 LINE L1 -1571 5902 5815 2 819 660 179 274 0 chr12 30726431 30726599 -90530931 + B3 SINE B2 1 214 -2 2 819 204 310 128 30 chr12 30727387 30727520 -90530010 - MIRm SINE MIR -86 190 45 2 819 366 291 168 0 chr12 30727535 30727738 -90529792 - L1MC4 LINE L1 -4858 1357 1121 2 819 315 281 65 72 chr12 30728020 30728158 -90529372 - L1MEg LINE L1 -4132 1952 1816 2 819 652 247 30 18 chr12 30728593 30728762 -90528768 - Tigger12A DNA MER2_type -78 713 543 2 819 21 0 0 0 chr12 30729103 30729124 -90528406 + AT_rich Low_complexity Low_complexity 1 21 0 2 819 30 27 0 0 chr12 30729134 30729171 -90528359 + AT_rich Low_complexity Low_complexity 1 37 0 2 819 813 243 63 0 chr12 30729173 30729362 -90528168 - Lx5 LINE L1 -3 7047 6847 2 819 579 40 0 0 chr12 30734010 30734084 -90523446 + (GGA)n Simple_repeat Simple_repeat 1 74 0 2 819 1137 274 19 43 chr12 30735652 30735941 -90521589 - Lx6 LINE L1 -4 7456 7171 2 819 369 0 0 0 chr12 30735941 30735982 -90521548 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 819 261 0 0 0 chr12 30735982 30736010 -90521520 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 819 1137 274 19 43 chr12 30736010 30736043 -90521487 - Lx6 LINE L1 -290 7170 7142 2 819 11338 158 63 45 chr12 30736055 30738455 -90519075 - L1_Mur3 LINE L1 -1175 4705 2263 2 819 682 279 162 30 chr12 30738559 30739064 -90518466 - L1MA7 LINE L1 -1612 6084 5548 2 819 225 0 0 0 chr12 30739158 30739183 -90518347 + (T)n Simple_repeat Simple_repeat 1 25 0 2 819 351 44 0 0 chr12 30739224 30739269 -90518261 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 819 578 273 0 95 chr12 30740383 30740541 -90516989 - RSINE1 SINE B4 -20 145 3 2 819 228 341 78 6 chr12 30740545 30740725 -90516805 - L1MA7 LINE L1 0 6291 6099 2 819 1657 34 15 0 chr12 30741002 30741207 -90516323 - MTA_Mm LTR MaLR 0 396 189 2 819 3649 23 2 2 chr12 30741189 30741630 -90515900 - MT-int LTR MaLR -657 441 1 2 819 4428 24 0 0 chr12 30741632 30742125 -90515405 - MT2_Mm LTR ERVL 0 493 1 2 819 567 329 43 0 chr12 30742135 30742299 -90515231 - B3A SINE B2 -27 171 1 2 819 377 291 109 146 chr12 30742475 30742914 -90514616 - RMER10A LTR ERVL -19 423 1 2 819 291 312 63 18 chr12 30743186 30743297 -90514233 - RLTR19-int LTR ERVK -1985 4152 4037 2 819 1625 173 27 27 chr12 30743539 30743877 -90513653 + RMER10B LTR ERVL 55 392 -6 2 819 288 365 33 11 chr12 30744201 30744381 -90513149 + RodERV21-int LTR ERV1 1613 1796 -3195 2 819 663 257 41 99 chr12 30744535 30745003 -90512527 + RLTR19-int LTR ERVK 2582 2931 -3206 2 819 517 259 135 101 chr12 30746720 30747076 -90510454 + RLTR9A LTR ERVK 1 368 0 2 819 1551 157 129 94 chr12 30747103 30747475 -90510055 + RLTR41 LTR ERV1 62 446 0 2 819 4369 16 10 0 chr12 30747562 30748050 -90509480 - MT2_Mm LTR ERVL 0 493 1 2 819 3988 88 25 4 chr12 30748122 30748671 -90508859 - L1_Mus4 LINE L1 -6 6630 6070 2 819 255 31 0 0 chr12 30749191 30749223 -90508307 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 819 1018 115 7 0 chr12 30749223 30749371 -90508159 - B2_Mm2 SINE B2 -46 149 1 2 819 585 40 0 0 chr12 30749405 30749481 -90508049 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2 819 261 245 74 56 chr12 30749529 30749637 -90507893 + MER52-int LTR ERV1 4998 5107 -2671 2 819 330 302 59 54 chr12 30749624 30749827 -90507703 + MER52-int LTR ERV1 5834 6037 -1054 2 819 273 260 52 96 chr12 30750173 30750288 -90507242 + RMER17C-int LTR ERVK 2653 2762 -476 2 819 2256 118 12 3 chr12 30750440 30750763 -90506767 + ORR1A3 LTR MaLR 1 326 0 2 819 476 270 30 71 chr12 30751348 30751485 -90506045 + RMER17C LTR ERVK 3 84 -326 2 819 477 0 0 0 chr12 30751485 30751538 -90505992 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 819 476 262 18 59 chr12 30751538 30751621 -90505909 + RMER17C LTR ERVK 85 165 -245 2 819 273 247 11 90 chr12 30752685 30752774 -90504756 + RLTR19-int LTR ERVK 4238 4319 -1818 2 819 281 229 16 16 chr12 30752963 30753025 -90504505 + RMER10A LTR ERVL 21 82 -360 2 819 2472 251 122 109 chr12 30753236 30753251 -90504279 - RLTR19-int LTR ERVK -2135 4002 3988 2 819 468 0 0 0 chr12 30753251 30753303 -90504227 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 819 2472 243 116 99 chr12 30753303 30755093 -90502437 - RLTR19-int LTR ERVK -2150 3987 1953 2 819 1603 198 50 57 chr12 30755190 30755591 -90501939 + RMER10B LTR ERVL 1 398 0 2 819 267 130 22 0 chr12 30755905 30755951 -90501579 - RLTR19-int LTR ERVK -3679 1843 1797 2 819 784 222 144 6 chr12 30755996 30756275 -90501255 - RLTR19-int LTR ERVK -3727 1795 1537 2 819 254 176 53 93 chr12 30756305 30756380 -90501150 - RLTR19-int LTR ERVK -5170 967 896 2 819 2647 153 60 55 chr12 30757354 30757919 -90499611 + RLTR12A LTR ERVK 1 568 0 2 819 827 232 62 150 chr12 30758107 30758277 -90499253 - RMER10A LTR ERVL -19 423 286 2 819 345 75 0 0 chr12 30758277 30758330 -90499200 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 819 621 58 0 0 chr12 30758330 30758415 -90499115 + (GA)n Simple_repeat Simple_repeat 2 87 0 2 819 827 232 62 150 chr12 30758415 30758695 -90498835 - RMER10A LTR ERVL -157 285 13 2 819 207 88 0 0 chr12 30759969 30760003 -90497527 + (T)n Simple_repeat Simple_repeat 1 34 0 3 819 320 326 36 58 chr12 30761735 30761857 -90495673 - L1MEg LINE L1 -4113 1971 1849 3 819 1204 48 0 0 chr12 30761857 30762003 -90495527 - B1_Mm SINE Alu 0 147 2 3 819 320 326 36 58 chr12 30762003 30762017 -90495513 - L1MEg LINE L1 -4236 1848 1838 3 819 302 332 171 48 chr12 30763532 30763842 -90493688 - MLT1B LTR MaLR 0 390 43 3 819 1058 171 55 16 chr12 30764233 30764458 -90493072 - RMER10A LTR ERVL -179 219 1 3 819 316 271 35 0 chr12 30764467 30764552 -90492978 - ORR1D2 LTR MaLR -282 88 1 3 819 2986 224 21 80 chr12 30764552 30764906 -90492624 - ORR1D2-int LTR MaLR 0 1370 1016 3 819 204 97 0 0 chr12 30764906 30764937 -90492593 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 819 2986 224 21 80 chr12 30764937 30765347 -90492183 - ORR1D2-int LTR MaLR -355 1015 651 3 819 2195 218 11 0 chr12 30765335 30765770 -90491760 - ORR1D2-int LTR MaLR -927 443 4 3 819 1287 232 121 1 chr12 30765776 30766089 -90491441 - ORR1D2 LTR MaLR 0 370 1 3 819 247 348 82 18 chr12 30766717 30766868 -90490662 - MIR SINE MIR -16 252 89 3 819 450 295 181 50 chr12 30767873 30768155 -90489375 - MLT1B-int LTR MaLR -405 982 664 3 819 262 261 0 14 chr12 30768522 30768592 -90488938 - MLT1B-int LTR MaLR -1051 336 268 3 819 38753 44 5 3 chr12 30769875 30776326 -90481204 - L1Md_T LINE L1 0 6585 26 3 819 686 361 63 4 chr12 30776493 30776763 -90480767 + B4A SINE B4 3 288 -4 3 819 1019 79 59 13 chr12 30778722 30778875 -90478655 + B2_Mm2 SINE B2 2 161 -34 3 819 798 41 0 0 chr12 30778877 30778975 -90478555 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 3 819 272 133 17 0 chr12 30780284 30780344 -90477186 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 819 438 306 6 0 chr12 30780344 30780504 -90477026 + (CA)n Simple_repeat Simple_repeat 2 162 0 3 819 399 41 0 0 chr12 30780577 30780626 -90476904 + (CTCA)n Simple_repeat Simple_repeat 1 49 0 3 819 431 306 6 0 chr12 30780627 30780797 -90476733 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 819 387 0 0 0 chr12 30781625 30781668 -90475862 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 819 405 265 19 10 chr12 30782776 30782879 -90474651 + PB1D10 SINE Alu 13 116 -1 3 819 186 43 0 0 chr12 30784156 30784179 -90473351 + (T)n Simple_repeat Simple_repeat 1 23 0 3 819 1117 43 0 0 chr12 30784214 30784355 -90473175 - L1Md_A LINE L1 0 6582 6442 3 819 934 63 252 0 chr12 30784355 30784498 -90473032 - B2_Mm2 SINE B2 -13 182 4 3 819 812 275 26 63 chr12 30784656 30784959 -90472571 + B4 SINE B4 1 292 0 3 819 213 39 0 0 chr12 30784977 30785003 -90472527 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 819 369 0 0 0 chr12 30785004 30785045 -90472485 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 819 249 139 0 0 chr12 30785689 30785732 -90471798 + (GGA)n Simple_repeat Simple_repeat 2 44 0 3 819 356 259 119 0 chr12 30789419 30789562 -90467968 + MLT1D LTR MaLR 318 477 -28 3 819 234 176 14 56 chr12 30789563 30789635 -90467895 + A-rich Low_complexity Low_complexity 3 71 0 3 819 245 35 0 0 chr12 30790501 30790530 -90467000 + (TAA)n Simple_repeat Simple_repeat 3 31 0 3 819 381 77 32 49 chr12 30790530 30790653 -90466877 + (TAAA)n Simple_repeat Simple_repeat 3 123 0 3 819 279 278 271 43 chr12 30791409 30791781 -90465749 + Charlie2a DNA MER1_type 1467 1923 -938 3 819 799 230 51 30 chr12 30791840 30792037 -90465493 - ID_B1 SINE B4 -8 216 16 3 819 4331 194 49 48 chr12 30792417 30794331 -90463199 + L1_Mur3 LINE L1 55 1993 -3887 3 819 293 315 69 14 chr12 30794398 30794543 -90462987 - B4 SINE B4 -138 154 2 3 819 256 183 0 32 chr12 30798743 30798768 -90458762 + A-rich Low_complexity Low_complexity 1 24 0 3 819 1159 55 7 27 chr12 30798768 30798917 -90458613 + B1_Mus1 SINE Alu 3 148 0 3 819 256 183 0 32 chr12 30798917 30798953 -90458577 + A-rich Low_complexity Low_complexity 25 60 0 3 819 1251 257 101 9 chr12 30799310 30799655 -90457875 + MTE2a LTR MaLR 3 379 0 3 819 635 212 31 40 chr12 30800675 30800873 -90456657 - RLTR11B LTR ERVK -32 496 277 3 819 826 268 5 46 chr12 30800926 30801218 -90456312 - RLTR11B LTR ERVK -163 278 1 3 102 2313 114 14 20 chr12 30801836 30802193 -90455337 - RLTR15 LTR ERVK -4 355 1 3 820 496 279 94 38 chr12 30804448 30804660 -90452870 + B4 SINE B4 1 224 -68 3 820 495 0 0 0 chr12 30807768 30807823 -90449707 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 3 820 2202 239 128 32 chr12 30807824 30808603 -90448927 + RMER13A LTR ERVK 1 854 -6 3 820 495 0 0 0 chr12 30808623 30808678 -90448852 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 3 820 555 307 63 0 chr12 30809528 30809717 -90447813 + B3 SINE B2 1 201 -15 3 820 2222 220 33 29 chr12 30810741 30811255 -90446275 - RMER20A LTR ERVK 0 516 1 3 820 1317 209 72 117 chr12 30811545 30811947 -90445583 + ORR1C2 LTR MaLR 1 384 0 3 820 641 361 55 18 chr12 30812312 30812586 -90444944 + B4A SINE B4 1 284 -8 3 820 345 93 0 0 chr12 30812877 30812931 -90444599 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 820 258 295 0 0 chr12 30813263 30813341 -90444189 - MER34A1 LTR ERV1 -21 566 489 3 820 360 0 0 0 chr12 30814580 30814620 -90442910 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 820 220 255 142 62 chr12 30814866 30814979 -90442551 - ID_B1 SINE B4 -16 208 87 3 820 343 269 98 32 chr12 30815349 30815472 -90442058 + B1F2 SINE Alu 18 148 -1 3 820 304 290 0 41 chr12 30816180 30816277 -90441253 + CT-rich Low_complexity Low_complexity 3 95 0 3 820 735 202 159 10 chr12 30817698 30817893 -90439637 - Lx5 LINE L1 -800 6250 6027 3 820 3969 213 10 13 chr12 30817902 30818691 -90438839 + Lx5 LINE L1 6261 7047 -3 3 820 507 17 0 0 chr12 30818807 30818867 -90438663 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 820 241 208 113 0 chr12 30819225 30819278 -90438252 + RMER15 LTR ERVL 94 152 -423 3 820 1167 161 84 23 chr12 30819321 30819582 -90437948 + RMER15 LTR ERVL 296 572 -3 3 820 1697 158 48 97 chr12 30820079 30820451 -90437079 - MTC LTR MaLR 0 421 68 3 820 5032 185 59 16 chr12 30820468 30821480 -90436050 - Lx5 LINE L1 0 7050 5995 3 820 405 169 13 0 chr12 30821502 30821579 -90435951 - MTC LTR MaLR -343 78 1 3 820 5633 172 92 25 chr12 30821579 30822758 -90434772 - MTC-int LTR MaLR 0 1258 1 3 820 954 152 70 11 chr12 30822758 30822944 -90434586 - MTC LTR MaLR 0 421 225 3 820 544 228 0 8 chr12 30822917 30823041 -90434489 - MTC LTR MaLR -298 123 1 3 820 259 298 12 0 chr12 30823384 30823468 -90434062 - L1MA9 LINE L1 -343 5969 5885 3 820 288 0 0 0 chr12 30823469 30823501 -90434029 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 820 388 250 0 32 chr12 30825507 30825602 -90431928 - PB1D10 SINE Alu -7 110 19 3 820 180 0 0 0 chr12 30825675 30825695 -90431835 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 3 820 1703 211 11 25 chr12 30827044 30827408 -90430122 + ORR1B2 LTR MaLR 1 359 -8 3 820 302 245 19 19 chr12 30827981 30828143 -90429387 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 3 820 299 299 10 0 chr12 30828169 30828266 -90429264 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 3 820 270 81 0 0 chr12 30828331 30828368 -90429162 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 3 820 3662 37 0 0 chr12 30828425 30828854 -90428676 + L1Md_F2 LINE L1 6142 6570 -12 3 820 389 54 18 0 chr12 30829025 30829081 -90428449 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 820 192 40 0 0 chr12 30829124 30829149 -90428381 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 820 189 0 0 0 chr12 30830148 30830169 -90427361 + (TTA)n Simple_repeat Simple_repeat 2 22 0 3 820 459 0 0 0 chr12 30830169 30830220 -90427310 + (ATG)n Simple_repeat Simple_repeat 1 51 0 3 820 2951 177 5 44 chr12 30830579 30831170 -90426360 - RLTR12A LTR ERVK 0 568 1 3 820 40562 26 1 6 chr12 30831623 30837797 -90419733 - L1Md_T LINE L1 -2 6580 445 3 820 1884 135 15 21 chr12 30837798 30838130 -90419400 - Lx LINE L1 -14 6640 6311 3 820 785 239 107 22 chr12 30840405 30840675 -90416855 - RMER5 LTR ERV1 -11 523 231 3 820 372 350 8 0 chr12 30841227 30841344 -90416186 - Tigger5 DNA MER2_type -2237 169 52 3 820 263 220 118 38 chr12 30841731 30841896 -90415634 - Lx5 LINE L1 -950 6108 5932 3 820 4692 170 37 55 chr12 30841868 30842488 -90415042 + Lx5 LINE L1 6182 6775 -275 3 820 2379 96 16 0 chr12 30842488 30842810 -90414720 + ORR1A2 LTR MaLR 1 327 0 3 820 4692 170 37 55 chr12 30842810 30843074 -90414456 + Lx5 LINE L1 6776 7050 0 3 820 4769 125 26 11 chr12 30843850 30844570 -90412960 + Lx4A LINE L1 6328 7058 0 3 820 783 294 62 73 chr12 30844734 30845358 -90412172 + L1MB4 LINE L1 5509 6125 -58 3 820 204 234 159 16 chr12 30845480 30845606 -90411924 + L2 LINE L2 2052 2195 -1224 3 820 613 178 29 58 chr12 30846829 30846966 -90410564 + MTD LTR MaLR 279 411 -8 3 820 356 157 0 28 chr12 30847705 30847777 -90409753 - B3 SINE B2 -133 83 14 3 820 276 30 0 0 chr12 30848201 30848234 -90409296 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 820 303 49 0 0 chr12 30850359 30850400 -90407130 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 820 333 0 0 0 chr12 30850400 30850436 -90407094 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 820 306 0 0 0 chr12 30850515 30850549 -90406981 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 3 820 1155 15 0 0 chr12 30851235 30851368 -90406162 + (TTCC)n Simple_repeat Simple_repeat 4 136 0 3 820 432 55 0 0 chr12 30851368 30851423 -90406107 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 820 319 279 52 35 chr12 30851546 30851661 -90405869 - PB1D10 SINE Alu 0 117 1 3 820 642 221 53 13 chr12 30852784 30852959 -90404571 - MTE2b LTR MaLR 0 379 191 3 820 21 0 0 0 chr12 30853465 30853486 -90404044 + AT_rich Low_complexity Low_complexity 1 21 0 3 820 872 239 65 39 chr12 30853705 30853984 -90403546 - MT2A LTR ERVL 0 533 248 3 820 382 286 70 43 chr12 30854322 30854350 -90403180 - B2_Mm2 SINE B2 -4 191 166 3 820 252 100 0 0 chr12 30854350 30854390 -90403140 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 820 601 241 109 7 chr12 30854390 30854547 -90402983 - B3A SINE B2 -27 171 1 3 820 353 212 47 0 chr12 30855016 30855101 -90402429 + L1_Rod LINE L1 885 973 -6635 3 820 1600 203 63 160 chr12 30855147 30856108 -90401422 + L1_Rod LINE L1 1062 1938 -3909 3 820 339 203 127 11 chr12 30856448 30856553 -90400977 + B1F SINE Alu 1 115 -34 3 820 425 283 93 108 chr12 30856578 30856966 -90400564 - RLTR11A2 LTR ERVK -16 511 130 3 820 240 292 0 15 chr12 30857115 30857181 -90400349 + ID4_ SINE ID 2 66 -17 3 820 180 0 0 0 chr12 30858623 30858643 -90398887 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 820 567 0 0 0 chr12 30858643 30858706 -90398824 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 820 27 29 0 0 chr12 30860827 30860861 -90396669 + AT_rich Low_complexity Low_complexity 1 34 0 4 820 353 244 35 0 chr12 30860877 30860963 -90396567 - RSINE1 SINE B4 -32 133 45 4 820 696 56 0 0 chr12 30861980 30862069 -90395461 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 820 234 0 0 0 chr12 30865002 30865028 -90392502 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 820 492 158 17 9 chr12 30865028 30865143 -90392387 + GA-rich Low_complexity Low_complexity 6 121 0 4 820 1160 302 78 0 chr12 30865264 30865622 -90391908 + Tigger7 DNA MER2_type 18 403 -2088 4 820 550 278 60 96 chr12 30865735 30866069 -90391461 - ORR1E LTR MaLR -37 322 1 4 820 1889 147 68 0 chr12 30866160 30866513 -90391017 - ORR1C2 LTR MaLR -7 377 1 4 820 491 319 12 6 chr12 30866696 30866866 -90390664 - B3A SINE B2 -27 171 1 4 820 248 302 138 0 chr12 30868424 30868540 -90388990 + MLT1A0 LTR MaLR 1 132 -233 4 820 589 279 17 2 chr12 30869762 30869939 -90387591 - ID_B1 SINE B4 0 224 50 4 820 885 19 0 0 chr12 30870101 30870204 -90387326 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 820 1132 232 88 4 chr12 30870386 30870646 -90386884 + B4A SINE B4 7 288 -4 4 820 594 41 0 0 chr12 30870710 30870783 -90386747 + (GGGAGA)n Simple_repeat Simple_repeat 6 78 0 4 820 206 171 0 24 chr12 30870784 30870826 -90386704 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 4 820 1020 30 8 0 chr12 30871070 30871204 -90386326 + B1_Mus1 SINE Alu 14 148 0 4 820 201 260 109 55 chr12 30871292 30871402 -90386128 - MIRb SINE MIR -83 179 64 4 820 249 222 0 14 chr12 30871753 30871826 -90385704 + (TTAAA)n Simple_repeat Simple_repeat 1 72 0 4 820 642 26 0 0 chr12 30871864 30871940 -90385590 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 820 624 118 0 0 chr12 30872096 30872189 -90385341 + L1Md_F2 LINE L1 5926 6018 -564 4 820 36361 43 0 3 chr12 30872189 30877455 -90380075 + L1Md_T LINE L1 242 5589 -297 4 820 8606 34 0 0 chr12 30877455 30878451 -90379079 + L1Md_T LINE L1 5590 6585 0 4 820 4520 54 2 37 chr12 30878455 30879053 -90378477 + L1Md_F2 LINE L1 6005 6581 -1 4 820 189 74 0 0 chr12 30879898 30879925 -90377605 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 820 458 308 0 0 chr12 30881036 30881156 -90376374 + B1F1 SINE Alu 24 143 -6 4 820 317 129 0 14 chr12 30882888 30882959 -90374571 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 820 619 259 191 20 chr12 30882965 30883205 -90374325 - B4 SINE B4 -2 290 10 4 820 311 311 77 62 chr12 30884595 30884804 -90372726 - MER20 DNA MER1_type 0 219 8 4 820 305 330 18 0 chr12 30888594 30888706 -90368824 + PB1D10 SINE Alu 2 115 -2 4 820 329 104 0 0 chr12 30888884 30888932 -90368598 - HAL1-3A_ME LINE L1 -835 2023 1976 4 820 422 92 0 26 chr12 30888946 30889024 -90368506 + (TATG)n Simple_repeat Simple_repeat 1 76 0 4 820 305 100 0 20 chr12 30889033 30889084 -90368446 + (TCCCC)n Simple_repeat Simple_repeat 1 50 0 4 820 266 248 111 28 chr12 30889084 30889192 -90368338 - L1MDa LINE L1 -2527 4010 3894 4 820 487 287 43 0 chr12 30889429 30889617 -90367913 - L1MDa LINE L1 -3283 3254 3059 4 820 406 223 144 33 chr12 30889664 30889845 -90367685 - L1MDa LINE L1 -3633 2904 2704 4 820 236 290 0 14 chr12 30890123 30890193 -90367337 - L1MDa LINE L1 -4415 2218 2150 4 820 982 294 123 46 chr12 30890262 30891258 -90366272 - L1MDa LINE L1 -4602 2031 959 4 820 388 208 64 71 chr12 30891835 30891975 -90365555 - L1MDa LINE L1 -6346 287 149 4 820 373 238 100 95 chr12 30892033 30892233 -90365297 + ORR1E LTR MaLR 53 253 -106 4 820 696 327 95 60 chr12 30893927 30894723 -90362807 + L1M3 LINE L1 2979 3810 -2330 4 820 207 0 0 0 chr12 30894723 30894746 -90362784 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 820 696 294 230 42 chr12 30894746 30895219 -90362311 + L1M3 LINE L1 3811 4396 -1750 4 820 465 19 0 0 chr12 30895219 30895273 -90362257 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 820 496 172 21 0 chr12 30897400 30897493 -90360037 - ORR1D2 LTR MaLR 0 370 276 4 820 1151 252 55 7 chr12 30897663 30897971 -90359559 - ORR1D2 LTR MaLR 0 370 48 4 820 791 281 51 11 chr12 30898603 30898877 -90358653 - B4 SINE B4 -6 286 2 4 820 608 134 25 19 chr12 30901269 30901429 -90356101 + (CA)n Simple_repeat Simple_repeat 1 161 0 4 820 319 380 6 25 chr12 30902501 30902663 -90354867 - RSINE1 SINE B4 -2 163 5 4 820 246 220 0 90 chr12 30902791 30902946 -90354584 + (TATATG)n Simple_repeat Simple_repeat 1 141 0 4 820 4180 75 7 38 chr12 30904523 30905102 -90352428 - L1_Mus2 LINE L1 0 6566 6006 4 820 772 87 7 28 chr12 30905612 30905724 -90351806 + (TTC)n Simple_repeat Simple_repeat 1 109 0 4 820 1452 44 0 0 chr12 30905724 30905904 -90351626 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 820 772 87 7 28 chr12 30905904 30905933 -90351597 + (TTC)n Simple_repeat Simple_repeat 2 30 0 4 820 549 347 26 0 chr12 30907204 30907394 -90350136 + Tigger7 DNA MER2_type 57 251 -2240 4 820 443 290 113 57 chr12 30907447 30907765 -90349765 + Tigger7 DNA MER2_type 2132 2467 -24 4 820 21 0 0 0 chr12 30908457 30908478 -90349052 + AT_rich Low_complexity Low_complexity 1 21 0 4 820 216 67 0 0 chr12 30908769 30908799 -90348731 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 820 1215 68 0 0 chr12 30908799 30908946 -90348584 - B1_Mus1 SINE Alu 0 148 2 4 820 700 133 8 15 chr12 30909943 30910073 -90347457 + C-rich Low_complexity Low_complexity 3 131 0 4 820 313 316 30 30 chr12 30913236 30913337 -90344193 + ID_B1 SINE B4 102 202 -22 4 820 270 0 0 0 chr12 30913785 30913815 -90343715 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 820 419 273 130 12 chr12 30913900 30914113 -90343417 + B4A SINE B4 29 276 -16 4 820 504 0 0 0 chr12 30914133 30914189 -90343341 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 820 267 259 25 0 chr12 30914206 30914287 -90343243 + (TCCA)n Simple_repeat Simple_repeat 1 83 0 4 820 181 241 18 36 chr12 30916146 30916202 -90341328 - L4 LINE RTE -1343 686 632 4 820 396 0 0 0 chr12 30920514 30920558 -90336972 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 4 820 216 0 0 0 chr12 30920875 30920899 -90336631 + (A)n Simple_repeat Simple_repeat 1 24 0 4 820 498 172 39 47 chr12 30922448 30922576 -90334954 - B1_Mur2 SINE Alu -9 140 14 4 820 421 325 114 13 chr12 30922921 30923158 -90334372 - B4 SINE B4 -29 263 3 4 820 213 39 0 0 chr12 30924609 30924635 -90332895 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 820 1038 261 14 83 chr12 30924635 30924923 -90332607 - B4 SINE B4 -23 269 2 4 820 2158 167 5 36 chr12 30925068 30925479 -90332051 + MTC LTR MaLR 1 398 -23 4 820 888 272 85 40 chr12 30927440 30927839 -90329691 + RMER5 LTR ERV1 75 491 -43 4 820 424 110 36 24 chr12 30928509 30928593 -90328937 + G-rich Low_complexity Low_complexity 2 86 0 4 820 22 56 0 0 chr12 30928884 30928920 -90328610 + AT_rich Low_complexity Low_complexity 1 36 0 4 820 423 0 0 0 chr12 30929625 30929672 -90327858 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 820 351 0 0 0 chr12 30929672 30929710 -90327820 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 820 210 182 23 0 chr12 30929731 30929775 -90327755 + GA-rich Low_complexity Low_complexity 2 46 0 4 820 227 315 14 0 chr12 30931199 30931272 -90326258 - L2 LINE L2 -525 2894 2821 4 821 243 185 53 53 chr12 30933415 30933472 -90324058 + PB1D10 SINE Alu 48 104 -13 4 821 309 306 98 13 chr12 30933555 30933688 -90323842 - B3A SINE B2 -7 209 76 4 821 265 213 37 9 chr12 30936881 30936990 -90320540 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 821 375 300 27 0 chr12 30936999 30937109 -90320421 - MT2A LTR ERVL -72 461 349 4 821 262 189 0 179 chr12 30937121 30937205 -90320325 - MTEa LTR MaLR -302 77 9 4 821 337 332 83 43 chr12 30939156 30939483 -90318047 + L1M4c LINE L1 1313 1652 -4732 4 821 387 378 20 5 chr12 30939745 30939947 -90317583 + MT2A LTR ERVL 264 468 -65 4 821 234 0 0 0 chr12 30939947 30939973 -90317557 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 821 1634 282 117 73 chr12 30940176 30940523 -90317007 + L1M4c LINE L1 3361 3731 -2645 4 821 600 14 0 0 chr12 30940523 30940592 -90316938 + (TAAA)n Simple_repeat Simple_repeat 4 72 0 4 821 1634 282 117 73 chr12 30940592 30941616 -90315914 + L1M4c LINE L1 3732 4793 -1583 4 821 252 311 11 0 chr12 30941621 30941711 -90315819 + B3A SINE B2 70 160 -38 4 821 665 275 0 77 chr12 30941743 30941952 -90315578 - B3A SINE B2 0 198 6 4 821 329 196 184 10 chr12 30941970 30942068 -90315462 + L1MA5 LINE L1 6181 6295 -5 4 821 2070 123 14 70 chr12 30943646 30944076 -90313454 + RMER17C LTR ERVK 1 406 -4 4 821 337 219 9 19 chr12 30946697 30946778 -90310752 + CT-rich Low_complexity Low_complexity 29 108 0 4 821 1205 96 0 6 chr12 30946778 30946957 -90310573 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 821 337 219 9 19 chr12 30946957 30946982 -90310548 + polypyrimidine Low_complexity Low_complexity 4 28 0 4 821 624 62 0 0 chr12 30948310 30948391 -90309139 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 821 216 86 0 0 chr12 30948558 30948593 -90308937 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 821 261 309 18 26 chr12 30948789 30948902 -90308628 + MTEb LTR MaLR 267 378 -1 4 821 514 327 65 43 chr12 30950005 30950356 -90307174 + ORR1E LTR MaLR 1 359 0 4 821 7804 182 62 6 chr12 30952097 30954682 -90302848 + Lx5 LINE L1 4307 7050 0 4 821 23 33 0 0 chr12 30955855 30955885 -90301645 + AT_rich Low_complexity Low_complexity 1 30 0 4 821 2313 208 103 11 chr12 30956073 30956482 -90301048 + Lx2B LINE L1 6418 6835 -165 4 821 402 21 0 0 chr12 30956482 30956529 -90301001 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 821 2313 208 103 11 chr12 30956529 30956644 -90300886 + Lx2B LINE L1 6836 6990 -10 4 821 492 192 0 0 chr12 30956669 30956768 -90300762 + GA-rich Low_complexity Low_complexity 2 100 0 4 821 252 167 0 0 chr12 30956766 30956814 -90300716 + (CAG)n Simple_repeat Simple_repeat 2 49 0 4 821 339 65 0 0 chr12 30956995 30957041 -90300489 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 821 706 266 186 4 chr12 30957113 30957355 -90300175 - B4 SINE B4 -4 288 3 4 821 661 302 113 7 chr12 30957500 30957900 -90299630 + L1MB7 LINE L1 5570 6014 -165 4 821 1121 191 10 10 chr12 30959203 30959404 -90298126 + Lx6 LINE L1 6912 7112 -348 4 821 22 35 0 0 chr12 30959777 30959806 -90297724 + AT_rich Low_complexity Low_complexity 1 29 0 5 821 519 17 0 0 chr12 30959861 30959921 -90297609 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 821 198 0 0 0 chr12 30959921 30959943 -90297587 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 821 597 177 0 0 chr12 30961152 30961299 -90296231 + (TG)n Simple_repeat Simple_repeat 2 148 0 5 821 855 199 7 0 chr12 30962193 30962339 -90295191 + B1_Mus1 SINE Alu 1 147 -1 5 821 1313 28 6 22 chr12 30965402 30965583 -90291947 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 821 246 241 9 69 chr12 30965892 30966008 -90291522 + (CATATA)n Simple_repeat Simple_repeat 5 113 0 5 821 288 77 0 0 chr12 30968206 30968245 -90289285 + (ATG)n Simple_repeat Simple_repeat 2 40 0 5 821 309 51 0 0 chr12 30968303 30968342 -90289188 + (TTA)n Simple_repeat Simple_repeat 3 41 0 5 821 593 146 12 1 chr12 30968343 30968454 -90289076 - B1_Mm SINE Alu -7 113 1 5 821 282 243 0 26 chr12 30969749 30969825 -90287705 + (CATA)n Simple_repeat Simple_repeat 3 76 0 5 821 522 0 0 0 chr12 30970543 30970601 -90286929 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 821 279 179 0 0 chr12 30970870 30970937 -90286593 - L1MC LINE L1 -2974 3172 3106 5 821 258 56 0 0 chr12 30972432 30972468 -90285062 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 5 821 355 289 13 32 chr12 30973377 30973531 -90283999 + (TATG)n Simple_repeat Simple_repeat 1 151 0 5 821 438 191 65 28 chr12 30974009 30974117 -90283413 + B1_Mur4 SINE Alu 39 150 0 5 821 258 105 0 0 chr12 30974139 30974177 -90283353 + (CAAG)n Simple_repeat Simple_repeat 1 38 0 5 821 304 255 37 28 chr12 30976833 30976942 -90280588 - L1M2 LINE L1 -4279 2570 2461 5 821 268 259 33 86 chr12 30976956 30976973 -90280557 + MT2B2 LTR ERVL 153 225 -359 5 821 607 208 25 8 chr12 30976973 30977094 -90280436 + ID_B1 SINE B4 87 209 -15 5 821 268 259 33 86 chr12 30977094 30977108 -90280422 + MT2B2 LTR ERVL 226 296 -288 5 821 247 263 39 13 chr12 30978426 30978503 -90279027 - ID SINE ID -142 82 4 5 821 375 221 27 49 chr12 30979645 30979869 -90277661 + (TCTA)n Simple_repeat Simple_repeat 1 219 0 5 821 6782 144 49 27 chr12 30980429 30981636 -90275894 + L1_Mur2 LINE L1 4255 5487 -390 5 821 313 271 68 27 chr12 30981632 30981780 -90275750 + Lx5 LINE L1 6897 7050 0 5 821 267 152 0 0 chr12 30981847 30981893 -90275637 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 821 739 210 56 17 chr12 30983645 30983824 -90273706 - B2_Mm2 SINE B2 -9 186 1 5 821 241 284 34 0 chr12 30983869 30983957 -90273573 + (TATATG)n Simple_repeat Simple_repeat 5 95 0 5 821 5008 54 5 0 chr12 30985519 30986132 -90271398 + L1Md_F2 LINE L1 5948 6563 -19 5 821 212 59 29 0 chr12 30986135 30986169 -90271361 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 821 1740 228 11 8 chr12 30986425 30986796 -90270734 - ORR1D1 LTR MaLR 0 374 3 5 821 211 305 17 0 chr12 30987454 30987513 -90270017 + GA-rich Low_complexity Low_complexity 4 63 0 5 821 523 276 113 14 chr12 30993650 30993863 -90263667 + L1MA7 LINE L1 5694 5927 -364 5 821 541 275 0 21 chr12 30993940 30994085 -90263445 + ID_B1 SINE B4 78 219 -5 5 821 356 227 11 22 chr12 30994101 30994191 -90263339 + L1MA7 LINE L1 6052 6140 -172 5 821 212 302 16 0 chr12 30994214 30994277 -90263253 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 821 282 261 34 25 chr12 30994282 30994400 -90263130 + L1MA7 LINE L1 6188 6306 -6 5 821 656 204 26 52 chr12 30994449 30994604 -90262926 - MTD LTR MaLR -1 418 268 5 821 271 307 55 82 chr12 30995262 30995482 -90262048 + L1M5 LINE L1 2601 2814 -3332 5 821 1037 85 0 47 chr12 30995495 30995667 -90261863 + L1Md_F3 LINE L1 6420 6583 -1 5 821 326 303 97 0 chr12 30995669 30995814 -90261716 + L1MA6 LINE L1 6130 6288 -12 5 821 588 236 16 0 chr12 30996513 30996636 -90260894 + B3A SINE B2 9 133 -65 5 821 474 259 7 54 chr12 30996794 30996941 -90260589 - B1_Mur2 SINE Alu 0 149 10 5 821 498 314 59 0 chr12 30996988 30997141 -90260389 + B4A SINE B4 130 291 -1 5 821 270 267 102 55 chr12 30998313 30998440 -90259090 + ORR1E LTR MaLR 1 133 -246 5 821 293 208 115 77 chr12 30998503 30998633 -90258897 + ORR1E LTR MaLR 109 243 -116 5 821 1820 252 30 54 chr12 31002226 31002725 -90254805 - RLTR16 LTR ERVK -18 487 1 1 821 1061 279 135 11 chr12 31002794 31003232 -90254298 + RMER5 LTR ERV1 43 534 0 2 821 606 193 17 17 chr12 31003506 31003622 -90253908 - B4 SINE B4 -5 287 172 3 821 928 315 8 21 chr12 31003626 31003866 -90253664 + B4 SINE B4 56 292 0 4 821 215 116 47 0 chr12 31004411 31004454 -90253076 + (CATAT)n Simple_repeat Simple_repeat 4 48 0 5 821 477 288 8 41 chr12 31004460 31004583 -90252947 - RSINE1 SINE B4 0 165 47 6 821 408 274 52 0 chr12 31004618 31004753 -90252777 - Lx6 LINE L1 -30 7430 7289 7 821 79 12 0 0 chr12 31004787 31004873 -90252657 + AT_rich Low_complexity Low_complexity 1 86 0 8 821 1219 267 123 101 chr12 31004873 31005906 -90251624 + L1MA8 LINE L1 2994 4049 -2091 9 821 312 27 0 0 chr12 31006024 31006061 -90251469 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1 821 521 289 45 21 chr12 31006104 31006381 -90251149 + L1MA8 LINE L1 5193 5478 -705 9 821 323 266 20 50 chr12 31006397 31006496 -90251034 + BC1_Mm scRNA scRNA 7 102 -50 1 821 470 305 87 34 chr12 31006562 31006918 -90250612 + L1MA8 LINE L1 5657 6018 -282 9 821 23 0 0 0 chr12 31007102 31007125 -90250405 + AT_rich Low_complexity Low_complexity 1 23 0 1 821 3315 205 29 3 chr12 31009006 31009638 -90247892 + Lx9 LINE L1 6771 7418 -226 1 821 540 0 0 0 chr12 31009644 31009704 -90247826 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 821 396 88 0 0 chr12 31009704 31009760 -90247770 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 821 347 148 71 87 chr12 31009784 31009910 -90247620 + Lx9 LINE L1 7519 7642 -2 1 821 310 328 52 6 chr12 31012054 31012226 -90245304 + L1MC1 LINE L1 3444 3623 -2523 1 821 24 77 0 0 chr12 31012401 31012453 -90245077 + AT_rich Low_complexity Low_complexity 1 52 0 1 821 5446 56 2 0 chr12 31012453 31013092 -90244438 - L1Md_F2 LINE L1 0 6582 5943 1 821 444 172 0 0 chr12 31013658 31013745 -90243785 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 821 355 265 150 36 chr12 31013753 31014027 -90243503 + L1MC1 LINE L1 4169 4473 -1673 1 821 408 326 126 44 chr12 31014136 31014614 -90242916 + L1MC1 LINE L1 4695 5211 -935 1 821 808 299 86 25 chr12 31014721 31014999 -90242531 - MTD LTR MaLR -71 348 54 2 821 612 249 196 25 chr12 31015122 31015562 -90241968 + L1MC1 LINE L1 5322 5852 -492 1 821 459 0 0 0 chr12 31015815 31015866 -90241664 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 821 875 150 43 12 chr12 31017952 31018114 -90239416 - URR1A DNA MER1_type -1 225 59 2 821 345 324 28 38 chr12 31019569 31019781 -90237749 + L1MB5 LINE L1 4539 4748 -1398 2 821 318 241 152 0 chr12 31019931 31020010 -90237520 + B1F SINE Alu 12 102 -47 2 821 2281 172 193 5 chr12 31020156 31020601 -90236929 - MT2A LTR ERVL -4 529 1 2 821 298 274 52 88 chr12 31020936 31021128 -90236402 + L1MB5 LINE L1 5714 5898 -276 2 821 264 219 139 28 chr12 31021213 31021321 -90236209 + L1MB5 LINE L1 6004 6123 -55 2 821 247 277 15 0 chr12 31022496 31022561 -90234969 + CT-rich Low_complexity Low_complexity 1 66 0 2 821 505 225 47 73 chr12 31024218 31024410 -90233120 + RLTR23 LTR ERV1 244 430 0 2 821 420 67 0 0 chr12 31024933 31024993 -90232537 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 821 185 65 32 0 chr12 31024997 31025028 -90232502 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 2 821 1171 95 0 0 chr12 31025512 31025659 -90231871 + B1_Mus2 SINE Alu 1 147 0 3 821 230 261 48 48 chr12 31028426 31028551 -90228979 + L1ME2z LINE L1 6318 6442 -2 3 821 626 292 31 79 chr12 31030610 31030837 -90226693 - MTEa LTR MaLR -162 217 2 3 821 546 318 133 24 chr12 31030841 31031134 -90226396 - MTEa-int LTR MaLR -3 1577 1253 3 821 652 315 140 49 chr12 31031149 31031499 -90226031 - MTEa-int LTR MaLR -476 1104 723 3 821 552 254 35 21 chr12 31032065 31032210 -90225320 - B1F1 SINE Alu 0 149 3 3 821 916 268 0 9 chr12 31033362 31033577 -90223953 - B3 SINE B2 -2 214 2 3 821 285 295 171 14 chr12 31034042 31034252 -90223278 + MLT1A0 LTR MaLR 75 317 -48 3 821 44 80 0 0 chr12 31034765 31034865 -90222665 + AT_rich Low_complexity Low_complexity 1 100 0 3 821 719 277 65 0 chr12 31035435 31035619 -90221911 - B3 SINE B2 -5 211 16 3 821 468 0 0 0 chr12 31035859 31035911 -90221619 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 821 278 96 27 27 chr12 31035911 31035986 -90221544 + (CAAAA)n Simple_repeat Simple_repeat 1 75 0 3 821 438 292 154 13 chr12 31036387 31036543 -90220987 - B4A SINE B4 0 292 115 4 821 1921 167 68 44 chr12 31037165 31037578 -90219952 + Lx5 LINE L1 6628 7050 0 4 821 546 67 0 0 chr12 31037733 31037808 -90219722 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 821 246 329 0 0 chr12 31037838 31037914 -90219616 - MT2A LTR ERVL -113 420 345 4 821 551 322 101 73 chr12 31037894 31038319 -90219211 - MT2A LTR ERVL -92 441 5 4 821 500 126 0 11 chr12 31039008 31039096 -90218434 + (TTCC)n Simple_repeat Simple_repeat 3 89 0 4 821 804 252 54 54 chr12 31039099 31039321 -90218209 - B4 SINE B4 -65 227 6 4 821 2306 41 18 4 chr12 31040186 31040523 -90217007 - MERVL-int LTR ERVL -1519 4242 3866 4 821 315 351 57 10 chr12 31040836 31041029 -90216501 + L1MC LINE L1 2974 3175 -2971 4 821 399 119 0 0 chr12 31041218 31041285 -90216245 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 821 459 0 0 0 chr12 31041285 31041335 -90216195 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 821 431 227 41 57 chr12 31041343 31041511 -90216019 + L1M5 LINE L1 3782 3943 -2197 5 821 437 289 25 66 chr12 31041522 31041644 -90215886 + RSINE1 SINE B4 2 118 -47 5 821 274 305 22 17 chr12 31041676 31041816 -90215714 + L1MC LINE L1 4027 4167 -1979 4 821 1007 209 25 10 chr12 31041895 31042093 -90215437 + B3 SINE B2 10 210 -6 5 821 358 295 61 23 chr12 31042121 31042253 -90215277 + B1F SINE Alu 5 141 -8 5 821 325 268 41 10 chr12 31042318 31042416 -90215114 + ORR1E LTR MaLR 257 357 -2 5 821 27 0 0 0 chr12 31043221 31043248 -90214282 + AT_rich Low_complexity Low_complexity 1 27 0 5 821 23 0 0 0 chr12 31045585 31045608 -90211922 + AT_rich Low_complexity Low_complexity 1 23 0 5 821 514 157 0 81 chr12 31047078 31047251 -90210279 + (TTTA)n Simple_repeat Simple_repeat 4 162 0 5 821 385 229 60 60 chr12 31047331 31047447 -90210083 - PB1D10 SINE Alu -1 116 1 5 821 550 198 11 17 chr12 31047690 31047870 -90209660 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 821 437 159 33 22 chr12 31047871 31047961 -90209569 - B1_Mur4 SINE Alu 0 150 60 6 821 229 255 53 0 chr12 31048002 31048096 -90209434 + L1MA8 LINE L1 6062 6160 -131 6 821 267 342 0 57 chr12 31048508 31048632 -90208898 + PB1D10 SINE Alu 1 117 0 6 821 318 312 76 63 chr12 31049149 31049416 -90208114 - ORR1D2 LTR MaLR -12 367 86 6 821 560 129 10 0 chr12 31049515 31049616 -90207914 + (TA)n Simple_repeat Simple_repeat 1 102 0 6 821 317 308 12 30 chr12 31050330 31050494 -90207036 + (TATATG)n Simple_repeat Simple_repeat 2 162 0 6 821 280 346 0 70 chr12 31050953 31051007 -90206523 + B4A SINE B4 40 85 -207 6 821 312 266 0 4 chr12 31051007 31051077 -90206453 + B1F2 SINE Alu 1 68 -49 6 821 1408 58 0 6 chr12 31051107 31051280 -90206250 - L1_Mus1 LINE L1 -1 6566 6395 6 821 3428 97 15 3 chr12 31051280 31051763 -90205767 + Lx9 LINE L1 5411 5898 -1746 6 821 21 0 0 0 chr12 31056025 31056046 -90201484 + AT_rich Low_complexity Low_complexity 1 21 0 7 821 891 282 9 4 chr12 31060106 31060334 -90197196 - MTEa LTR MaLR -93 286 58 7 821 234 312 35 21 chr12 31061281 31061425 -90196105 - L1MC4 LINE L1 -606 7436 7291 7 821 29 84 0 0 chr12 31062130 31062201 -90195329 + AT_rich Low_complexity Low_complexity 1 71 0 7 821 324 270 46 74 chr12 31062844 31063060 -90194470 + Lx9 LINE L1 5892 6101 -1543 7 821 243 294 127 9 chr12 31063133 31063243 -90194287 + Lx9 LINE L1 6319 6441 -1203 7 102 24956 134 46 55 chr12 31063242 31065921 -90191609 + Lx4A LINE L1 583 3210 -2667 7 822 4725 70 12 8 chr12 31065921 31066508 -90191022 + L1Md_F2 LINE L1 5994 6582 0 7 822 24956 122 46 69 chr12 31066508 31066545 -90190985 + Lx4A LINE L1 3211 3234 -2643 7 822 495 0 0 0 chr12 31066545 31066600 -90190930 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 822 24956 122 46 69 chr12 31066600 31066816 -90190714 + Lx4A LINE L1 3235 3480 -2397 7 822 273 57 0 0 chr12 31066816 31066851 -90190679 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 822 24956 122 46 69 chr12 31066851 31068040 -90189490 + Lx4A LINE L1 3481 4673 -1204 7 822 981 112 19 6 chr12 31068040 31068201 -90189329 + L1_Mus3 LINE L1 6470 6632 -6 7 822 24956 129 44 45 chr12 31068201 31070522 -90187008 + Lx4A LINE L1 4674 7017 -41 7 822 353 247 12 0 chr12 31070574 31070655 -90186875 + Lx9 LINE L1 6674 6755 -889 8 822 4243 217 30 25 chr12 31070655 31071592 -90185938 + Lx9 LINE L1 6436 7377 -267 7 822 883 103 14 7 chr12 31071617 31071763 -90185767 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 8 822 223 224 0 33 chr12 31072375 31072435 -90185095 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 8 822 741 244 109 49 chr12 31073071 31073530 -90184000 + L1_Rod LINE L1 3112 3587 -2293 8 822 827 277 8 41 chr12 31073533 31073800 -90183730 + L1_Rod LINE L1 4814 5071 -776 8 822 618 155 0 0 chr12 31074449 31074565 -90182965 + (TA)n Simple_repeat Simple_repeat 1 116 0 8 822 329 120 0 20 chr12 31074574 31074625 -90182905 + HAL1-3A_ME LINE L1 1976 2025 -833 8 822 658 328 65 20 chr12 31075141 31075636 -90181894 + L1M5 LINE L1 2656 3172 -2974 8 822 414 0 0 0 chr12 31075892 31075938 -90181592 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 822 598 257 99 55 chr12 31075950 31076020 -90181510 - B4A SINE B4 -7 285 225 8 822 540 0 0 0 chr12 31076020 31076080 -90181450 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 8 822 598 257 99 55 chr12 31076080 31076211 -90181319 - B4A SINE B4 -68 224 77 8 822 546 224 0 65 chr12 31076374 31076498 -90181032 - PB1D10 SINE Alu 0 117 2 9 822 1786 158 90 6 chr12 31076838 31077181 -90180349 + ORR1C2 LTR MaLR 12 383 -1 9 822 279 0 0 0 chr12 31077656 31077687 -90179843 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 822 567 0 0 0 chr12 31077687 31077749 -90179781 + (GA)n Simple_repeat Simple_repeat 1 63 0 9 822 258 182 89 18 chr12 31077761 31077817 -90179713 - B4A SINE B4 -54 238 179 9 822 1640 208 12 15 chr12 31077818 31078146 -90179384 - MTD LTR MaLR -92 327 1 9 822 1410 53 16 5 chr12 31078233 31078421 -90179109 + L1_Mus3 LINE L1 6449 6638 0 9 822 397 301 87 57 chr12 31079504 31079768 -90177762 + MLT1A LTR MaLR 76 347 -27 9 822 663 289 159 14 chr12 31079990 31080204 -90177326 + B4 SINE B4 3 247 -45 9 822 771 275 41 36 chr12 31080637 31080856 -90176674 - ORR1D2 LTR MaLR -9 361 142 9 822 201 94 0 0 chr12 31083160 31083192 -90174338 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1 822 402 21 0 0 chr12 31083273 31083320 -90174210 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 822 752 235 21 47 chr12 31084373 31084565 -90172965 + Lx6 LINE L1 7138 7324 -136 1 822 4233 52 0 6 chr12 31085862 31086362 -90171168 - L1Md_F2 LINE L1 -1 6581 6085 1 822 2023 36 4 20 chr12 31086362 31086604 -90170926 + L1Md_F2 LINE L1 5846 6088 -494 1 822 346 137 0 0 chr12 31088165 31088216 -90169314 - HAL1-3A_ME LINE L1 -833 2025 1975 1 822 264 30 0 0 chr12 31088513 31088546 -90168984 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1 822 278 115 115 0 chr12 31089616 31089668 -90167862 - MTE2b LTR MaLR -21 358 301 1 822 2104 124 21 6 chr12 31089671 31090004 -90167526 - ORR1A1 LTR MaLR -8 338 1 1 822 756 324 97 30 chr12 31090006 31090273 -90167257 - MTE2b LTR MaLR -75 304 20 1 822 23 0 0 0 chr12 31091083 31091106 -90166424 + AT_rich Low_complexity Low_complexity 1 23 0 1 822 2072 324 71 11 chr12 31091196 31092503 -90165027 - L1M2 LINE L1 -639 5241 3826 1 822 1023 101 0 0 chr12 31092574 31092712 -90164818 - ORR1B1 LTR MaLR 0 394 257 1 822 335 60 0 20 chr12 31092714 31092765 -90164765 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1 822 1076 138 72 0 chr12 31092769 31092964 -90164566 - Lx9 LINE L1 -127 7517 7309 1 822 1159 79 55 0 chr12 31093430 31093594 -90163936 + L1_Mus3 LINE L1 6464 6636 -2 1 822 2562 198 10 17 chr12 31094599 31095119 -90162411 + RMER5 LTR ERV1 1 516 -18 1 822 522 31 0 0 chr12 31097685 31097749 -90159781 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 822 1373 215 97 57 chr12 31097767 31098252 -90159278 - MT2B LTR ERVL 0 601 1 1 822 230 240 186 20 chr12 31098541 31098643 -90158887 - RMER21A LTR ERV1 -68 879 761 1 822 1021 256 106 39 chr12 31099119 31099508 -90158022 + MTD LTR MaLR 1 405 -14 1 822 30 59 0 0 chr12 31100264 31100315 -90157215 + AT_rich Low_complexity Low_complexity 1 51 0 1 822 1145 50 0 0 chr12 31100489 31100630 -90156900 - L1_Mus3 LINE L1 -192 6446 6306 1 822 1272 89 17 6 chr12 31100630 31100882 -90156648 + L1_Mus3 LINE L1 6442 6638 0 1 822 1022 248 119 32 chr12 31101826 31102158 -90155372 + MTE2b LTR MaLR 52 377 -2 1 822 540 0 0 0 chr12 31104267 31104327 -90153203 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 822 1461 88 0 0 chr12 31104327 31104966 -90152564 + (CA)n Simple_repeat Simple_repeat 1 639 0 1 822 1158 112 0 2 chr12 31104978 31105421 -90152109 + (CA)n Simple_repeat Simple_repeat 1 441 0 1 822 448 302 74 26 chr12 31105755 31106064 -90151466 - L1MDa LINE L1 -4725 1908 1585 1 822 790 326 68 9 chr12 31106827 31107099 -90150431 + B4 SINE B4 6 292 0 1 822 488 228 6 0 chr12 31107114 31107285 -90150245 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 822 683 278 15 50 chr12 31107354 31107555 -90149975 - B3A SINE B2 0 198 5 1 822 299 296 39 81 chr12 31107588 31107773 -90149757 - B3A SINE B2 -25 191 4 1 822 21 0 0 0 chr12 31108571 31108592 -90148938 + AT_rich Low_complexity Low_complexity 1 21 0 1 822 520 292 1 37 chr12 31109612 31109774 -90147756 + Lx7 LINE L1 5589 5776 -524 1 822 387 0 0 0 chr12 31109774 31109817 -90147713 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 822 512 305 105 21 chr12 31109817 31109939 -90147591 + Lx7 LINE L1 5777 5925 -375 1 822 1784 210 46 19 chr12 31110111 31110484 -90147046 - MTD LTR MaLR -2 417 35 1 822 22 0 0 0 chr12 31110704 31110726 -90146804 + AT_rich Low_complexity Low_complexity 1 22 0 1 822 410 261 144 0 chr12 31112694 31112847 -90144683 - L1MA9 LINE L1 -137 6175 6001 1 822 2429 183 5 0 chr12 31116258 31116674 -90140856 + MTC LTR MaLR 1 418 -3 1 822 346 273 68 0 chr12 31118320 31118452 -90139078 - RMER15 LTR ERVL -1 574 434 1 822 565 253 68 0 chr12 31121194 31121356 -90136174 + MLT1A1 LTR MaLR 236 408 0 1 822 774 169 0 57 chr12 31122340 31122497 -90135033 - B1_Mus1 SINE Alu 0 148 1 1 822 393 298 86 60 chr12 31122502 31122770 -90134760 - L1MC3 LINE L1 -19 7766 7492 1 822 429 20 0 0 chr12 31123558 31123608 -90133922 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 822 21 57 0 0 chr12 31125157 31125192 -90132338 + AT_rich Low_complexity Low_complexity 1 35 0 1 822 953 147 0 6 chr12 31125282 31125453 -90132077 + CT-rich Low_complexity Low_complexity 3 172 0 1 822 262 247 107 27 chr12 31125454 31125529 -90132001 - RSINE1 SINE B4 -22 143 63 1 822 180 0 0 0 chr12 31125975 31125995 -90131535 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 822 292 308 0 97 chr12 31126405 31126518 -90131012 - MTEa LTR MaLR -247 132 31 1 822 1911 159 67 14 chr12 31126518 31126863 -90130667 + ORR1B2 LTR MaLR 1 363 -4 1 822 292 308 0 97 chr12 31126863 31126893 -90130637 - MTEa LTR MaLR -349 30 3 1 822 228 86 0 0 chr12 31127587 31127622 -90129908 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 1 822 495 0 0 0 chr12 31127623 31127678 -90129852 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 822 32172 81 14 6 chr12 31129080 31134064 -90123466 + L1Md_F2 LINE L1 563 5585 -298 1 822 7829 64 1 13 chr12 31134065 31135073 -90122457 + L1Md_F2 LINE L1 5587 6582 0 1 822 240 35 0 0 chr12 31135076 31135105 -90122425 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 822 21 82 0 0 chr12 31136681 31136730 -90120800 + AT_rich Low_complexity Low_complexity 1 49 0 1 822 552 298 0 14 chr12 31136935 31137078 -90120452 + B1_Mur1 SINE Alu 2 142 -7 1 822 648 262 34 77 chr12 31137575 31137782 -90119748 - B3A SINE B2 0 198 1 1 822 577 301 35 6 chr12 31139042 31139216 -90118314 - B4A SINE B4 -111 181 3 1 822 245 197 0 57 chr12 31139889 31139959 -90117571 - Lx7 LINE L1 -19 7677 7612 1 822 489 62 0 0 chr12 31140244 31140309 -90117221 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 822 213 39 0 0 chr12 31140309 31140334 -90117196 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 822 606 246 0 14 chr12 31140515 31140655 -90116875 + ORR1D1 LTR MaLR 1 138 -236 1 822 298 206 33 14 chr12 31140643 31140726 -90116804 + ORR1D1 LTR MaLR 284 371 -3 1 822 1752 143 55 17 chr12 31140766 31141114 -90116416 - ORR1B2 LTR MaLR 0 367 7 1 822 6515 167 78 58 chr12 31141121 31141819 -90115711 - ORR1B2-int LTR MaLR 0 1509 784 1 822 522 0 0 0 chr12 31141819 31141877 -90115653 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 1 822 6515 167 78 58 chr12 31141877 31142657 -90114873 - ORR1B2-int LTR MaLR -726 783 3 1 822 1942 161 35 0 chr12 31142661 31143008 -90114522 - ORR1B2 LTR MaLR -8 359 1 1 822 5080 184 36 19 chr12 31144417 31145257 -90112273 + Lx5 LINE L1 6063 6912 -138 1 822 684 24 0 0 chr12 31145257 31145339 -90112191 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 822 5080 184 36 19 chr12 31145339 31145470 -90112060 + Lx5 LINE L1 6913 7049 -1 1 822 2560 160 127 16 chr12 31146006 31146502 -90111028 + Lx5 LINE L1 6479 7029 -21 1 822 441 0 0 0 chr12 31146503 31146552 -90110978 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 1 822 363 172 56 33 chr12 31147160 31147250 -90110280 - PB1D10 SINE Alu 0 117 26 1 822 414 0 0 0 chr12 31147992 31148038 -90109492 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1 822 1506 149 21 103 chr12 31148823 31149152 -90108378 - ORR1B1 LTR MaLR -8 386 85 1 822 354 296 126 14 chr12 31149515 31149793 -90107737 - L1M2 LINE L1 -2623 3520 3212 1 822 21 0 0 0 chr12 31149841 31149862 -90107668 + AT_rich Low_complexity Low_complexity 1 21 0 1 822 2580 141 143 25 chr12 31150176 31150699 -90106831 + RMER4B LTR ERVK 1 585 0 1 822 434 255 124 25 chr12 31151603 31151764 -90105766 - L1MC5 LINE L1 -812 7149 6973 1 822 242 0 61 0 chr12 31152706 31152739 -90104791 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 822 3949 175 39 47 chr12 31153675 31154590 -90102940 - RMER13B LTR ERVK 0 908 1 1 822 378 0 0 0 chr12 31155059 31155101 -90102429 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 822 531 0 0 0 chr12 31155101 31155159 -90102371 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 822 273 329 83 14 chr12 31156770 31156915 -90100615 - MLT1A1 LTR MaLR -2 406 252 1 822 22 35 0 0 chr12 31159858 31159887 -90097643 + AT_rich Low_complexity Low_complexity 1 29 0 1 822 238 204 148 0 chr12 31159890 31159944 -90097586 - Lx8 LINE L1 -10 7463 7402 1 822 444 328 70 16 chr12 31160359 31160545 -90096985 + ORR1E LTR MaLR 1 196 -163 1 822 382 227 200 15 chr12 31160540 31160670 -90096860 + MTE-int LTR MaLR 351 504 -1076 1 822 396 0 0 0 chr12 31160786 31160830 -90096700 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 822 375 304 27 0 chr12 31160921 31161033 -90096497 + PB1D7 SINE Alu 6 120 0 1 822 280 292 2 2 chr12 31163054 31163150 -90094380 + B1F SINE Alu 17 112 -8 1 822 409 297 35 0 chr12 31166225 31166370 -90091160 - L1M2 LINE L1 -604 5687 5538 1 822 21 0 0 0 chr12 31168047 31168068 -90089462 + AT_rich Low_complexity Low_complexity 1 21 0 1 822 456 97 0 0 chr12 31171359 31171431 -90086099 + MusHAL1 LINE L1 2009 2080 -632 1 822 367 224 28 93 chr12 31171490 31171598 -90085932 + RLTR31_Mm LTR ERVK 91 191 -370 1 822 349 319 132 50 chr12 31172858 31173198 -90084332 + L1MC LINE L1 5022 5389 -757 1 822 234 0 0 0 chr12 31173238 31173264 -90084266 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1 822 189 0 0 0 chr12 31173265 31173286 -90084244 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 822 756 250 77 0 chr12 31173294 31173462 -90084068 - B3 SINE B2 -34 182 2 1 822 312 339 160 32 chr12 31173463 31173504 -90084026 + L1ME1 LINE L1 5426 5467 -712 1 822 188 34 0 33 chr12 31173504 31173534 -90083996 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 822 312 339 160 32 chr12 31173534 31174047 -90083483 + L1ME1 LINE L1 5468 6051 -128 1 822 275 278 9 0 chr12 31174169 31174284 -90083246 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 822 531 31 0 0 chr12 31174395 31174460 -90083070 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 822 270 0 0 0 chr12 31174460 31174489 -90083041 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 822 278 345 164 27 chr12 31174881 31175173 -90082357 + MLT1E3 LTR MaLR 263 594 -30 1 822 244 213 38 51 chr12 31175840 31175919 -90081611 - RMER1C Other Other -5 1337 1260 1 822 455 231 59 15 chr12 31175968 31176104 -90081426 - Lx8 LINE L1 -235 7238 7097 1 822 206 233 7 56 chr12 31176186 31176278 -90081252 + CT-rich Low_complexity Low_complexity 1 87 0 2 822 354 98 0 0 chr12 31178416 31178467 -90079063 + (ATG)n Simple_repeat Simple_repeat 3 53 0 2 822 894 314 79 59 chr12 31179677 31180336 -90077194 + Charlie10 DNA MER1_type 2023 2694 -128 2 822 226 373 0 18 chr12 31180493 31180605 -90076925 + GA-rich Low_complexity Low_complexity 5 114 0 2 822 205 37 35 69 chr12 31183439 31183497 -90074033 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 2 822 405 0 0 0 chr12 31184285 31184330 -90073200 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 822 270 0 0 0 chr12 31184539 31184569 -90072961 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 822 190 308 187 0 chr12 31185204 31185295 -90072235 - MIRb SINE MIR -35 233 126 2 822 2936 161 80 13 chr12 31185949 31186496 -90071034 + RMER4B LTR ERVK 2 585 0 2 822 4194 78 0 5 chr12 31186752 31187306 -90070224 + L1_Mus2 LINE L1 6016 6566 0 2 822 1635 248 80 39 chr12 31188988 31189500 -90068030 - RMER5 LTR ERV1 -1 533 1 2 822 35 63 0 0 chr12 31190092 31190155 -90067375 + AT_rich Low_complexity Low_complexity 1 63 0 2 822 1032 318 38 11 chr12 31190395 31190764 -90066766 + MTEb LTR MaLR 1 379 0 2 822 3310 186 34 2 chr12 31190962 31191558 -90065972 - Lx5 LINE L1 -3 7047 6433 2 822 471 78 0 0 chr12 31191755 31191819 -90065711 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 822 21 0 0 0 chr12 31192200 31192221 -90065309 + AT_rich Low_complexity Low_complexity 1 21 0 2 822 304 286 117 54 chr12 31192684 31192924 -90064606 + L1ME1 LINE L1 5778 6032 -147 2 822 609 86 0 0 chr12 31193546 31193639 -90063891 + (GA)n Simple_repeat Simple_repeat 2 94 0 2 822 3671 192 22 30 chr12 31194277 31194987 -90062543 - Lx5 LINE L1 -5 7045 6341 2 822 779 109 30 23 chr12 31194988 31195120 -90062410 + L1_Mur2 LINE L1 4168 4300 -1577 2 823 382 321 116 64 chr12 31196761 31197211 -90060319 - L1MEc LINE L1 -4909 1491 1019 2 823 1689 131 0 17 chr12 31197225 31197521 -90060009 + L1VL1 LINE L1 2 292 -6130 2 823 29685 84 6 2 chr12 31197519 31202193 -90055337 + L1Md_F2 LINE L1 799 5589 -297 2 823 7426 65 14 25 chr12 31202194 31203200 -90054330 + L1Md_F2 LINE L1 5591 6585 0 2 823 377 237 132 28 chr12 31203357 31203539 -90053991 - L1MEc LINE L1 -5541 859 659 2 823 399 252 0 10 chr12 31204595 31204699 -90052831 + L1Md_F LINE L1 422 524 -6092 2 823 16284 109 7 7 chr12 31204697 31207309 -90050221 + L1Md_F LINE L1 2179 4791 -1092 2 823 5691 37 0 0 chr12 31207310 31207982 -90049548 + L1Md_T LINE L1 5911 6582 0 2 823 5969 70 0 9 chr12 31207986 31208761 -90048769 + L1_Mus1 LINE L1 5800 6567 0 2 823 624 216 18 90 chr12 31208878 31209100 -90048430 - Lx2B LINE L1 -3 6997 6806 2 823 38 51 0 0 chr12 31209105 31209164 -90048366 + AT_rich Low_complexity Low_complexity 1 59 0 2 823 416 289 111 14 chr12 31210258 31210402 -90047128 - B4A SINE B4 -17 275 118 2 823 240 242 66 126 chr12 31210413 31210564 -90046966 - MLT1C LTR MaLR -2 465 324 2 823 2915 111 24 9 chr12 31210840 31211294 -90046236 - Lx LINE L1 -6 6648 6188 2 823 231 250 30 111 chr12 31211305 31211404 -90046126 - B1F SINE Alu -5 144 54 2 823 242 269 46 92 chr12 31211903 31212034 -90045496 - ORR1D1 LTR MaLR 0 374 250 2 823 297 275 0 36 chr12 31214642 31214725 -90042805 - ID4_ SINE ID -2 81 2 2 823 578 248 39 65 chr12 31215610 31215765 -90041765 + B3A SINE B2 48 198 0 2 823 4137 39 0 0 chr12 31215864 31216346 -90041184 - LTRIS_Mm LTR ERV1 0 482 1 2 823 513 300 78 48 chr12 31216527 31216940 -90040590 - RLTR11A2 LTR ERVK -117 411 2 2 823 6437 238 75 85 chr12 31216944 31217414 -90040116 - MYSERV-int LTR ERVK -4 6546 6057 2 823 450 0 0 0 chr12 31217414 31217464 -90040066 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 823 6437 238 75 85 chr12 31217464 31218313 -90039217 - MYSERV-int LTR ERVK -494 6056 5224 2 823 899 118 7 0 chr12 31218313 31218457 -90039073 + (GGAA)n Simple_repeat Simple_repeat 4 148 0 2 823 6437 238 75 85 chr12 31218457 31218558 -90038972 - MYSERV-int LTR ERVK -1327 5223 5118 2 823 369 0 0 0 chr12 31218558 31218599 -90038931 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 823 6437 238 75 85 chr12 31218599 31218867 -90038663 - MYSERV-int LTR ERVK -1433 5117 4836 2 823 1139 0 8 0 chr12 31218867 31218998 -90038532 + (GAA)n Simple_repeat Simple_repeat 1 132 0 2 823 6437 238 75 85 chr12 31218998 31219878 -90037652 - MYSERV-int LTR ERVK -1715 4835 3977 2 823 1192 35 0 0 chr12 31219878 31220019 -90037511 + B1_Mm SINE Alu 1 141 -6 2 823 6437 238 75 85 chr12 31220019 31220243 -90037287 - MYSERV-int LTR ERVK -2574 3976 3781 2 823 1313 7 0 0 chr12 31220502 31220656 -90036874 - L1Md_T LINE L1 -976 4907 4754 2 823 6136 14 0 1 chr12 31220656 31221391 -90036139 + L1Md_T LINE L1 4853 5586 -297 2 823 8594 35 0 0 chr12 31221391 31222387 -90035143 + L1Md_T LINE L1 5587 6582 0 2 823 509 300 92 51 chr12 31223065 31223556 -90033974 - RLTR11A2 LTR ERVK -16 511 1 2 823 234 105 0 0 chr12 31224997 31225035 -90032495 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2 823 263 132 0 36 chr12 31225731 31225786 -90031744 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 2 823 1958 155 258 36 chr12 31226141 31226664 -90030866 - RMER6C LTR ERVK -51 639 1 2 823 492 226 48 8 chr12 31226664 31226789 -90030741 - RMER6-int LTR ERVK 0 3177 3048 2 823 2448 150 102 23 chr12 31226790 31227268 -90030262 - RMER6-int LTR ERVK -79 3098 2583 2 823 379 172 0 15 chr12 31227268 31227333 -90030197 - LSU-rRNA_Hsa rRNA rRNA -3195 1840 1777 2 823 257 122 0 0 chr12 31227335 31227376 -90030154 - RMER6-int LTR ERVK -667 2510 2470 2 823 5140 138 81 12 chr12 31227374 31228230 -90029300 - RMER6-int LTR ERVK -1435 1742 828 2 823 230 315 117 10 chr12 31230009 31230214 -90027316 - L1M5 LINE L1 -697 5482 5256 2 823 3364 55 0 0 chr12 31231007 31231407 -90026123 - MTB LTR MaLR 0 400 1 2 823 2302 210 39 11 chr12 31231659 31232179 -90025351 - RMER5 LTR ERV1 0 534 1 2 823 510 17 0 0 chr12 31232529 31232588 -90024942 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2 823 2071 128 0 0 chr12 31233091 31233410 -90024120 + ORR1A3 LTR MaLR 1 319 -7 2 823 355 214 0 53 chr12 31233943 31234037 -90023493 + Lx8 LINE L1 7187 7275 -198 2 823 1900 99 3 62 chr12 31234915 31235238 -90022292 + ORR1A4 LTR MaLR 18 321 -8 2 823 1516 221 73 18 chr12 31239161 31239558 -90017972 - MTC LTR MaLR -2 419 1 2 823 316 0 22 22 chr12 31240945 31240990 -90016540 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 2 823 1377 105 5 5 chr12 31242131 31242323 -90015207 + B2_Mm2 SINE B2 2 193 -2 2 823 14898 140 14 24 chr12 31242361 31244948 -90012582 + L1_Mur2 LINE L1 2471 5031 -846 2 823 1350 159 30 8 chr12 31244946 31245180 -90012350 + Lx4B LINE L1 6588 6826 -232 2 823 2304 198 55 47 chr12 31245171 31245524 -90012006 + Lx5 LINE L1 6467 6811 -239 2 823 666 0 0 0 chr12 31245524 31245598 -90011932 + (CCTG)n Simple_repeat Simple_repeat 1 74 0 2 823 2304 198 55 47 chr12 31245598 31245823 -90011707 + Lx5 LINE L1 6812 7050 0 2 823 277 252 0 36 chr12 31245834 31245945 -90011585 + L1M4 LINE L1 2842 2948 -3198 2 823 421 169 71 12 chr12 31247004 31247172 -90010358 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 823 22 0 0 0 chr12 31247295 31247317 -90010213 + AT_rich Low_complexity Low_complexity 1 22 0 2 823 920 123 35 23 chr12 31247317 31247491 -90010039 - Lx LINE L1 -1 6653 6478 2 823 344 369 29 14 chr12 31248120 31248395 -90009135 - L1M5 LINE L1 -2534 3612 3334 2 823 655 163 14 0 chr12 31248582 31248729 -90008801 + GA-rich Low_complexity Low_complexity 2 150 0 2 823 235 291 0 23 chr12 31249013 31249101 -90008429 + L1MCb LINE L1 819 904 -5141 2 823 695 223 142 31 chr12 31249516 31249798 -90007732 - L1_Mur3 LINE L1 -1525 4621 4264 2 823 1432 209 130 11 chr12 31249812 31250174 -90007356 + MTC LTR MaLR 12 416 -5 2 823 1267 254 19 40 chr12 31250180 31250554 -90006976 - L1_Mur3 LINE L1 -1619 4261 3896 2 823 2332 278 22 76 chr12 31250556 31251371 -90006159 + Lx8 LINE L1 6418 7188 -285 2 823 261 21 0 94 chr12 31251485 31251538 -90005992 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2 823 2058 182 205 21 chr12 31251605 31252117 -90005413 - RMER19C LTR ERVK 0 611 6 2 823 1248 103 95 40 chr12 31252122 31252396 -90005134 - MurERV4_19-int LTR ERVK 0 5780 5492 2 823 1253 213 71 135 chr12 31252414 31253148 -90004382 + RMER19C LTR ERVK 24 898 -4 2 823 38 68 0 0 chr12 31253473 31253546 -90003984 + AT_rich Low_complexity Low_complexity 1 73 0 2 823 816 144 11 46 chr12 31253981 31254156 -90003374 + Lx LINE L1 6483 6651 -3 2 823 550 313 4 53 chr12 31254247 31254473 -90003057 - B3 SINE B2 0 216 2 2 823 1151 208 174 93 chr12 31254812 31255295 -90002235 - MT2A LTR ERVL -11 522 1 2 823 25 0 0 0 chr12 31257849 31257874 -89999656 + AT_rich Low_complexity Low_complexity 1 25 0 2 823 23 33 0 0 chr12 31258839 31258869 -89998661 + AT_rich Low_complexity Low_complexity 1 30 0 2 823 359 250 45 27 chr12 31259194 31259305 -89998225 + MLT1B LTR MaLR 233 345 -45 2 823 417 20 0 0 chr12 31263269 31263319 -89994211 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 823 212 185 19 0 chr12 31267209 31267263 -89990267 + CT-rich Low_complexity Low_complexity 1 55 0 2 823 4017 148 53 4 chr12 31268246 31268477 -89989053 - Lx4B LINE L1 -2 7056 6806 2 823 468 0 0 0 chr12 31268477 31268529 -89989001 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 823 4017 148 53 4 chr12 31268529 31269015 -89988515 - Lx4B LINE L1 -253 6805 6306 2 823 189 0 0 0 chr12 31269224 31269245 -89988285 + (A)n Simple_repeat Simple_repeat 1 21 0 2 823 241 344 0 32 chr12 31275526 31275619 -89981911 + RSINE1 SINE B4 33 122 -43 2 823 279 0 0 0 chr12 31276098 31276129 -89981401 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 823 467 339 108 0 chr12 31276676 31276936 -89980594 - MER2 DNA MER2_type 0 345 58 2 823 24 0 0 0 chr12 31277762 31277786 -89979744 + AT_rich Low_complexity Low_complexity 1 24 0 2 823 2079 157 62 32 chr12 31278102 31278504 -89979026 - MTD LTR MaLR -1 418 5 2 823 922 306 38 54 chr12 31280412 31280850 -89976680 + RMER1C Other Other 153 758 -584 2 823 493 264 24 16 chr12 31280831 31280954 -89976576 + RMER1C Other Other 1070 1193 -149 2 823 561 148 40 16 chr12 31282137 31282261 -89975269 + Lx2B LINE L1 6870 6996 -4 2 823 891 87 0 0 chr12 31282268 31282394 -89975136 + (GGAA)n Simple_repeat Simple_repeat 4 129 0 2 823 573 115 0 0 chr12 31283656 31283743 -89973787 + (A)n Simple_repeat Simple_repeat 1 87 0 2 823 23 33 0 0 chr12 31285675 31285705 -89971825 + AT_rich Low_complexity Low_complexity 1 30 0 2 823 207 0 0 0 chr12 31286363 31286386 -89971144 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2 823 205 180 32 16 chr12 31292174 31292236 -89965294 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 823 624 181 174 26 chr12 31292937 31293128 -89964402 - MTD LTR MaLR 0 419 195 2 823 189 0 0 0 chr12 31293383 31293404 -89964126 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 823 644 145 8 0 chr12 31293413 31293530 -89964000 + GA-rich Low_complexity Low_complexity 2 119 0 3 823 269 326 27 7 chr12 31295937 31296085 -89961445 + (TATATG)n Simple_repeat Simple_repeat 1 151 0 3 823 506 43 14 0 chr12 31297159 31297228 -89960302 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 823 1113 305 115 28 chr12 31297243 31297637 -89959893 - Lx9 LINE L1 -206 7438 6997 3 823 1326 88 11 0 chr12 31297637 31297818 -89959712 - B2_Mm1t SINE B2 -8 185 3 3 823 1113 305 115 28 chr12 31297818 31297969 -89959561 - Lx9 LINE L1 -648 6996 6845 3 823 1440 85 65 9 chr12 31298920 31299134 -89958396 - L1Md_F2 LINE L1 -1 6581 6356 3 823 186 43 0 0 chr12 31299184 31299207 -89958323 + (TTCTCC)n Simple_repeat Simple_repeat 3 25 0 3 823 771 183 17 0 chr12 31299213 31299388 -89958142 + CT-rich Low_complexity Low_complexity 3 180 0 3 823 369 289 9 0 chr12 31299863 31299977 -89957553 + PB1D10 SINE Alu 2 116 -1 3 823 203 300 29 0 chr12 31300617 31300687 -89956843 + CT-rich Low_complexity Low_complexity 1 72 0 3 823 655 279 55 20 chr12 31301176 31301377 -89956153 - ID_B1 SINE B4 -3 221 14 3 823 1432 259 103 29 chr12 31301442 31302516 -89955014 - L1M3 LINE L1 -535 5765 4609 3 823 233 247 250 33 chr12 31302926 31303106 -89954424 + MER97c DNA MER1_type? 57 275 -815 3 823 26 30 0 0 chr12 31304446 31304479 -89953051 + AT_rich Low_complexity Low_complexity 1 33 0 3 823 531 151 0 0 chr12 31304730 31304823 -89952707 + (TGG)n Simple_repeat Simple_repeat 1 93 0 3 823 597 28 0 0 chr12 31305084 31305155 -89952375 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 823 1986 101 35 7 chr12 31305533 31305843 -89951687 + ORR1A2 LTR MaLR 1 319 -8 3 823 1334 176 97 4 chr12 31305897 31306165 -89951365 - ORR1B2 LTR MaLR -74 293 1 3 823 3647 159 65 11 chr12 31306165 31306807 -89950723 - ORR1B2-int LTR MaLR 0 1509 821 3 823 1770 154 16 90 chr12 31306807 31307250 -89950280 - RMER17C LTR ERVK 0 410 1 3 823 3647 159 65 11 chr12 31307250 31307355 -89950175 - ORR1B2-int LTR MaLR -689 820 721 3 823 394 185 31 61 chr12 31307313 31307411 -89950119 - B1_Mur3 SINE Alu -31 118 24 3 823 322 220 10 29 chr12 31308039 31308142 -89949388 - Lx4B LINE L1 -29 7029 6929 3 823 1263 178 75 7 chr12 31308134 31308412 -89949118 - Lx5 LINE L1 -50 7000 6704 3 823 693 0 0 0 chr12 31312311 31312388 -89945142 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 823 548 121 11 0 chr12 31312388 31312479 -89945051 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 823 372 273 54 62 chr12 31315577 31315706 -89941824 + ID_B1 SINE B4 4 131 -93 3 823 210 220 33 17 chr12 31315757 31315817 -89941713 + (CAAG)n Simple_repeat Simple_repeat 3 63 0 3 823 249 57 0 0 chr12 31316225 31316260 -89941270 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 823 210 128 0 0 chr12 31318170 31318209 -89939321 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 823 1287 53 6 0 chr12 31318297 31318466 -89939064 - L1Md_F2 LINE L1 -13 6569 6400 3 823 500 306 106 30 chr12 31318593 31318792 -89938738 - ID_B1 SINE B4 0 224 11 3 823 345 219 0 0 chr12 31319132 31319196 -89938334 - ID4_ SINE ID -18 65 2 3 823 245 29 29 0 chr12 31319356 31319390 -89938140 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 823 234 176 0 0 chr12 31319396 31319447 -89938083 + GA-rich Low_complexity Low_complexity 2 52 0 3 823 223 329 35 0 chr12 31319852 31319937 -89937593 - B1F SINE Alu -22 127 40 3 823 243 0 0 0 chr12 31320969 31320996 -89936534 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 823 864 256 7 70 chr12 31321799 31322072 -89935458 - MTEb LTR MaLR -9 370 115 3 823 412 352 29 58 chr12 31322076 31322384 -89935146 + MT2A LTR ERVL 1 299 -234 3 823 937 173 0 23 chr12 31322763 31322940 -89934590 - B2_Mm2 SINE B2 -19 176 4 3 823 9099 20 2 1 chr12 31323866 31325296 -89932234 - L1Md_A LINE L1 0 6582 5172 3 823 189 154 0 0 chr12 31325396 31325435 -89932095 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 824 312 233 0 8 chr12 31326634 31326718 -89930812 + L1MA5 LINE L1 5832 5923 -377 3 824 289 249 142 28 chr12 31326725 31326936 -89930594 - Lx9 LINE L1 -9 7635 7401 3 824 498 17 0 0 chr12 31328014 31328073 -89929457 + (TTGG)n Simple_repeat Simple_repeat 2 60 0 3 824 23 68 0 0 chr12 31328961 31329005 -89928525 + AT_rich Low_complexity Low_complexity 1 44 0 3 824 712 188 21 7 chr12 31330074 31330219 -89927311 - B1_Mus1 SINE Alu 0 148 2 3 824 306 0 0 0 chr12 31330595 31330629 -89926901 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 3 824 899 186 27 5 chr12 31334289 31334422 -89923108 + ORR1C2 LTR MaLR 1 132 -252 3 824 414 0 0 0 chr12 31334422 31334468 -89923062 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 824 899 186 27 5 chr12 31334468 31334518 -89923012 + ORR1C2 LTR MaLR 133 186 -198 3 824 202 164 15 62 chr12 31334520 31334585 -89922945 + C-rich Low_complexity Low_complexity 1 62 0 3 824 346 276 66 44 chr12 31337198 31337422 -89920108 + L1MEg LINE L1 2056 2286 -3860 3 824 254 240 67 9 chr12 31338337 31338442 -89919088 + L1MEg LINE L1 5313 5423 -1021 3 824 479 270 0 0 chr12 31339040 31339140 -89918390 - Lx8 LINE L1 -148 7325 7226 3 824 668 237 17 39 chr12 31339940 31340120 -89917410 + RMER15 LTR ERVL 400 575 0 3 824 1962 132 15 152 chr12 31340550 31341022 -89916508 - RMER17C LTR ERVK -3 407 1 3 824 3583 83 0 2 chr12 31341138 31341586 -89915944 + L1_Mus1 LINE L1 6121 6567 0 3 824 341 308 0 101 chr12 31341824 31341943 -89915587 + B3A SINE B2 78 184 -14 3 824 23 33 0 0 chr12 31341968 31341998 -89915532 + AT_rich Low_complexity Low_complexity 1 30 0 3 824 21 0 0 0 chr12 31342012 31342033 -89915497 + AT_rich Low_complexity Low_complexity 1 21 0 3 824 1171 261 107 39 chr12 31342606 31342961 -89914569 - MTE2a LTR MaLR 0 379 1 3 824 25 0 0 0 chr12 31343409 31343434 -89914096 + AT_rich Low_complexity Low_complexity 1 25 0 3 824 42 20 0 0 chr12 31343472 31343521 -89914009 + AT_rich Low_complexity Low_complexity 1 49 0 3 824 3086 38 0 17 chr12 31345259 31345611 -89911919 + ORR1A0 LTR MaLR 1 346 0 3 824 9646 55 7 2 chr12 31345611 31346897 -89910633 + ORR1A0-int LTR MaLR 1 1292 -500 3 824 1850 44 0 0 chr12 31346894 31347120 -89910410 + ORR1A0 LTR MaLR 121 346 0 3 824 632 248 73 0 chr12 31348097 31348234 -89909296 - B1_Mus1 SINE Alu -1 147 1 3 824 281 319 71 109 chr12 31348480 31348719 -89908811 + ORR1E LTR MaLR 94 323 -36 3 824 513 0 0 0 chr12 31349600 31349657 -89907873 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 824 430 184 0 65 chr12 31350192 31350285 -89907245 - B3 SINE B2 -103 113 27 3 824 7644 89 5 11 chr12 31350314 31350738 -89906792 - L1_Mus4 LINE L1 0 6636 6257 3 824 2724 62 65 0 chr12 31350738 31351063 -89906467 + ORR1A1 LTR MaLR 1 346 0 3 824 26783 140 12 22 chr12 31351063 31357137 -89900393 - L1_Mus4 LINE L1 -380 6256 356 3 824 286 100 0 0 chr12 31357138 31357178 -89900352 - B3 SINE B2 -176 40 1 3 824 194 318 110 96 chr12 31357930 31358118 -89899412 - L2a LINE L2 -1 3425 3232 3 824 636 14 0 0 chr12 31358118 31358191 -89899339 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 824 495 0 0 0 chr12 31358191 31358245 -89899285 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 824 194 346 152 50 chr12 31358245 31358836 -89898694 - L2a LINE L2 -195 3231 2527 3 824 188 111 28 0 chr12 31359755 31359791 -89897739 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 3 824 399 41 0 0 chr12 31361175 31361224 -89896306 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 824 263 284 12 0 chr12 31361777 31361858 -89895672 + CT-rich Low_complexity Low_complexity 3 84 0 3 824 288 0 0 0 chr12 31362180 31362212 -89895318 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 3 824 613 288 129 45 chr12 31362370 31362929 -89894601 - L1M4 LINE L1 -1387 5619 5014 3 824 770 300 127 19 chr12 31362943 31363007 -89894523 - L1M4 LINE L1 -2192 4814 4748 3 824 198 0 0 0 chr12 31363007 31363029 -89894501 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 824 770 300 127 19 chr12 31363029 31363641 -89893889 - L1M4 LINE L1 -2259 4747 4066 3 824 260 312 41 34 chr12 31363797 31363943 -89893587 + MLT1A0 LTR MaLR 216 362 -3 3 824 265 293 70 23 chr12 31363956 31364127 -89893403 - L1M4 LINE L1 -5522 1812 1634 3 824 267 345 91 29 chr12 31364466 31364806 -89892724 - L1M4 LINE L1 -5640 1264 904 3 824 39102 40 0 3 chr12 31365498 31371753 -89885777 - L1Md_T LINE L1 0 6585 255 3 824 2522 107 3 0 chr12 31371830 31372156 -89885374 - ORR1A2 LTR MaLR 0 327 1 3 824 8770 146 44 8 chr12 31372156 31373728 -89883802 - ORR1A2-int LTR MaLR 0 1792 164 3 824 430 271 90 8 chr12 31373975 31374109 -89883421 + RMER15 LTR ERVL 417 561 -14 3 824 295 300 25 0 chr12 31374217 31374297 -89883233 - L1MC4 LINE L1 -4484 1731 1650 3 824 209 196 20 0 chr12 31374449 31374500 -89883030 + C-rich Low_complexity Low_complexity 4 55 0 3 824 228 314 145 21 chr12 31374632 31375116 -89882414 - L1MC4 LINE L1 -5004 1211 668 3 824 309 282 75 25 chr12 31375795 31375915 -89881615 + L1M5 LINE L1 5309 5434 -690 3 824 577 228 15 7 chr12 31375930 31376067 -89881463 - Lx7 LINE L1 0 7696 7559 3 824 836 138 0 12 chr12 31376074 31376242 -89881288 + GA-rich Low_complexity Low_complexity 4 169 0 3 824 330 67 0 0 chr12 31376242 31376287 -89881243 + (CGAGA)n Simple_repeat Simple_repeat 1 45 0 3 824 1224 67 0 0 chr12 31376288 31376468 -89881062 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 3 824 228 342 9 17 chr12 31376726 31376842 -89880688 + (CA)n Simple_repeat Simple_repeat 2 116 0 3 824 564 165 0 0 chr12 31378761 31378919 -89878611 + CT-rich Low_complexity Low_complexity 2 159 0 3 824 360 150 0 0 chr12 31379425 31379505 -89878025 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 824 390 21 0 0 chr12 31380796 31380843 -89876687 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 824 3561 35 0 5 chr12 31380952 31381350 -89876180 - MTA_Mm LTR MaLR 0 396 1 3 824 304 270 128 75 chr12 31381613 31381801 -89875729 - RMER15 LTR ERVL -13 562 365 3 824 330 273 9 66 chr12 31381901 31382007 -89875523 - Lx8 LINE L1 -310 7163 7064 3 824 287 363 43 11 chr12 31382751 31382843 -89874687 + B1F1 SINE Alu 2 96 -53 3 824 636 14 0 0 chr12 31382850 31382923 -89874607 + (GGA)n Simple_repeat Simple_repeat 3 75 0 3 824 444 267 140 31 chr12 31385538 31385775 -89871755 - L1M3 LINE L1 -1464 4676 4400 3 824 1153 208 127 46 chr12 31385775 31386082 -89871448 - IAPEY3_LTR LTR ERVK 0 332 1 3 824 444 267 140 31 chr12 31386082 31386165 -89871365 - L1M3 LINE L1 -1741 4399 4321 3 824 515 222 24 0 chr12 31386169 31386295 -89871235 + L1MCb LINE L1 1026 1154 -4891 3 824 245 328 45 30 chr12 31386892 31387024 -89870506 + L1MCb LINE L1 1249 1382 -5369 3 824 514 279 147 27 chr12 31387026 31387271 -89870259 + L1MCb LINE L1 1576 1854 -4897 3 824 3320 82 5 0 chr12 31387271 31387676 -89869854 - MTB_Mm LTR MaLR 0 407 1 4 824 514 279 147 27 chr12 31387676 31387832 -89869698 + L1MCb LINE L1 1855 2025 -4726 3 824 536 238 136 71 chr12 31387839 31388117 -89869413 + L1MC2 LINE L1 6001 6304 -40 4 824 755 237 14 0 chr12 31388117 31388256 -89869274 + B1_Mur4 SINE Alu 3 143 -7 4 824 414 0 0 0 chr12 31388261 31388307 -89869223 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 824 536 237 139 76 chr12 31388307 31388342 -89869188 + L1MC2 LINE L1 6308 6344 0 4 824 751 305 115 12 chr12 31391863 31392185 -89865345 - MTEa LTR MaLR -7 372 18 4 824 250 290 14 0 chr12 31393158 31393227 -89864303 + GA-rich Low_complexity Low_complexity 3 72 0 4 824 4691 12 0 0 chr12 31394368 31394886 -89862644 + L1Md_A LINE L1 6065 6582 0 4 824 405 309 55 89 chr12 31395826 31396061 -89861469 + B4A SINE B4 6 232 -60 4 824 489 17 0 0 chr12 31396131 31396189 -89861341 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 824 462 36 0 0 chr12 31396228 31396284 -89861246 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 824 529 303 19 62 chr12 31396640 31396802 -89860728 - RSINE1 SINE B4 0 165 11 4 824 227 352 0 11 chr12 31396875 31396967 -89860563 + (CATA)n Simple_repeat Simple_repeat 4 94 0 4 824 495 177 0 0 chr12 31396979 31397075 -89860455 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 824 264 246 43 0 chr12 31399189 31399258 -89858272 - Lx8 LINE L1 -1012 6461 6390 4 824 1111 320 41 17 chr12 31399241 31399660 -89857870 + Lx7 LINE L1 6478 6906 -790 4 824 440 202 18 0 chr12 31399685 31399799 -89857731 + (TATATG)n Simple_repeat Simple_repeat 4 119 0 4 824 236 348 70 18 chr12 31399802 31399916 -89857614 + Lx7 LINE L1 6950 7069 -627 4 824 281 102 0 39 chr12 31399916 31399967 -89857563 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 4 824 411 363 16 5 chr12 31399967 31400161 -89857369 + Lx8 LINE L1 7079 7274 -199 4 824 618 231 122 0 chr12 31400365 31400521 -89857009 + MTD LTR MaLR 207 381 -38 4 824 204 235 0 0 chr12 31400795 31400846 -89856684 + T-rich Low_complexity Low_complexity 1 51 0 4 824 2548 145 32 5 chr12 31401728 31402138 -89855392 + MTC LTR MaLR 1 421 0 4 824 215 279 62 41 chr12 31402665 31402762 -89854768 - L2c LINE L2 -309 3078 2980 4 824 464 179 68 68 chr12 31403162 31403324 -89854206 - MER53 DNA hAT -27 166 5 4 824 858 241 20 0 chr12 31403550 31403749 -89853781 + B3 SINE B2 7 209 -7 4 824 28 0 0 0 chr12 31403749 31403777 -89853753 + AT_rich Low_complexity Low_complexity 1 28 0 4 824 216 321 0 0 chr12 31406002 31406058 -89851472 + B4A SINE B4 2 57 -235 4 824 1804 216 67 8 chr12 31406101 31406492 -89851038 + Lx5 LINE L1 6634 7047 -3 4 824 662 266 60 5 chr12 31406509 31406694 -89850836 + B4A SINE B4 80 274 -18 4 824 207 100 0 0 chr12 31406697 31406727 -89850803 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 824 252 302 99 33 chr12 31406900 31407080 -89850450 - L1MDb LINE L1 -987 5419 5235 4 824 4573 121 62 12 chr12 31407080 31407850 -89849680 - RMER17D2 LTR ERVK 0 809 1 4 824 252 302 99 33 chr12 31407850 31407881 -89849649 - L1MDb LINE L1 -1172 5234 5195 4 824 800 246 22 5 chr12 31407986 31408170 -89849360 + ORR1E LTR MaLR 9 195 -164 4 824 426 103 75 7 chr12 31408173 31408319 -89849211 + (TCTA)n Simple_repeat Simple_repeat 4 159 0 4 824 672 112 70 0 chr12 31408355 31408675 -89848855 + (TCTA)n Simple_repeat Simple_repeat 1 342 0 4 824 327 226 160 122 chr12 31408687 31408868 -89848662 + ORR1E LTR MaLR 172 359 0 4 824 267 302 54 8 chr12 31408899 31409029 -89848501 - L1MDb LINE L1 -5373 1036 901 4 824 976 151 21 26 chr12 31412717 31412907 -89844623 - ORR1A4 LTR MaLR -52 277 89 4 824 239 251 0 8 chr12 31415603 31415674 -89841856 + Lx4A LINE L1 5358 5441 -918 4 824 283 360 10 0 chr12 31415680 31415780 -89841750 + ID_B1 SINE B4 105 205 -19 4 824 400 265 0 46 chr12 31415886 31415973 -89841557 + RSINE1 SINE B4 83 165 0 4 824 728 153 19 0 chr12 31415974 31416291 -89841239 + (CAGA)n Simple_repeat Simple_repeat 1 323 0 4 824 551 167 6 0 chr12 31416260 31416422 -89841108 + (CA)n Simple_repeat Simple_repeat 2 164 0 4 824 1790 177 25 66 chr12 31416438 31417005 -89840525 + Lx4A LINE L1 5471 5974 -1084 4 824 541 117 0 0 chr12 31417027 31417104 -89840426 + B1_Mus1 SINE Alu 1 77 -71 4 824 2004 170 75 26 chr12 31417108 31417202 -89840328 + Lx4A LINE L1 6642 6763 -295 4 824 558 0 0 0 chr12 31417202 31417264 -89840266 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 824 2004 170 75 26 chr12 31417264 31417556 -89839974 + Lx4A LINE L1 6764 7046 -12 4 824 477 0 0 0 chr12 31417726 31417779 -89839751 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 824 666 311 45 9 chr12 31419654 31419878 -89837652 + B4A SINE B4 4 235 -57 4 824 307 222 148 0 chr12 31419883 31419964 -89837566 + B3A SINE B2 89 181 -17 4 824 688 91 22 38 chr12 31419974 31420157 -89837373 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 824 588 71 62 40 chr12 31420172 31420348 -89837182 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 824 216 0 0 0 chr12 31420390 31420414 -89837116 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 824 498 313 68 29 chr12 31421763 31421970 -89835560 - Lx8 LINE L1 -107 7366 7152 4 824 621 0 0 0 chr12 31422485 31422554 -89834976 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 824 1316 167 221 7 chr12 31426083 31426354 -89831176 - ORR1A4 LTR MaLR 0 329 1 4 824 619 180 14 7 chr12 31427161 31427301 -89830229 + T-rich Low_complexity Low_complexity 5 145 0 4 824 288 283 71 0 chr12 31428178 31428291 -89829239 - MER20 DNA MER1_type -98 121 1 4 824 23 54 0 0 chr12 31428396 31428433 -89829097 + AT_rich Low_complexity Low_complexity 1 37 0 4 824 525 212 0 0 chr12 31428442 31428560 -89828970 + (CATATA)n Simple_repeat Simple_repeat 2 119 0 4 824 2828 50 84 0 chr12 31428616 31428995 -89828535 - RLTR10A LTR ERVK 0 411 1 4 824 1089 102 7 0 chr12 31429089 31429236 -89828294 - B1_Mus1 SINE Alu 0 148 1 4 824 240 171 24 12 chr12 31430245 31430328 -89827202 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 824 245 128 0 0 chr12 31430328 31430367 -89827163 + RMER1B Other Other 1016 1054 -12 4 824 633 324 87 40 chr12 31430387 31430686 -89826844 + MTEa LTR MaLR 25 337 -42 4 824 257 53 24 85 chr12 31430693 31430775 -89826755 + T-rich Low_complexity Low_complexity 6 82 0 4 824 623 164 22 15 chr12 31430927 31431063 -89826467 + URR1B DNA MER1_type 89 225 0 4 824 3255 175 68 29 chr12 31431100 31431717 -89825813 + RMER1B Other Other 412 1052 -14 4 824 576 0 0 0 chr12 31431732 31431796 -89825734 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 824 266 358 21 31 chr12 31431883 31432076 -89825454 - MLT1-int LTR MaLR -1180 191 1 4 824 1764 56 0 0 chr12 31437089 31437303 -89820227 - L1Md_F2 LINE L1 -756 5127 4914 4 824 3798 54 2 0 chr12 31437303 31437769 -89819761 + L1Md_F2 LINE L1 5120 5586 -297 4 824 8102 55 3 1 chr12 31437769 31438757 -89818773 + L1Md_F2 LINE L1 5587 6576 -6 4 824 450 0 0 0 chr12 31439265 31439315 -89818215 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 824 7499 21 1 0 chr12 31439498 31440359 -89817171 + L1Md_T LINE L1 4570 5431 -452 4 824 430 21 0 0 chr12 31440359 31440406 -89817124 + L1Md_T LINE L1 5540 5586 -297 4 824 8457 39 0 0 chr12 31440407 31441402 -89816128 + L1Md_T LINE L1 5588 6582 0 4 824 984 154 0 7 chr12 31442388 31442538 -89814992 + B1_Mur2 SINE Alu 1 149 0 4 824 6031 205 40 25 chr12 31442981 31444222 -89813308 + Lx5 LINE L1 5804 7034 -16 4 824 290 47 47 0 chr12 31444222 31444265 -89813265 + (TTAA)n Simple_repeat Simple_repeat 4 48 0 4 824 5539 204 39 25 chr12 31444265 31444278 -89813252 + Lx5 LINE L1 7035 7049 -1 4 824 279 0 0 0 chr12 31444510 31444541 -89812989 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 824 1557 120 44 0 chr12 31444565 31444815 -89812715 - ORR1A4-int LTR MaLR -1702 261 1 4 824 2158 126 9 9 chr12 31444815 31445144 -89812386 - ORR1A4 LTR MaLR 0 329 1 4 824 241 231 170 80 chr12 31446361 31446573 -89810957 + L1MC3 LINE L1 7457 7687 -98 4 824 363 342 0 9 chr12 31447314 31447426 -89810104 + PB1D10 SINE Alu 6 116 -1 4 824 282 338 0 0 chr12 31447446 31447523 -89810007 + ID4_ SINE ID 6 82 -1 4 824 324 0 0 0 chr12 31447533 31447569 -89809961 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 824 239 133 0 22 chr12 31447594 31447640 -89809890 + GA-rich Low_complexity Low_complexity 1 45 0 4 824 1384 148 4 9 chr12 31448741 31448966 -89808564 + URR1B DNA MER1_type 1 224 -1 4 824 33 0 0 0 chr12 31449169 31449202 -89808328 + AT_rich Low_complexity Low_complexity 1 33 0 4 824 7035 124 32 2 chr12 31449206 31450283 -89807247 - Lx4A LINE L1 -4 7054 5946 4 824 384 292 83 8 chr12 31450402 31450523 -89807007 + ID_B1 SINE B4 91 220 -4 4 824 1252 248 37 52 chr12 31450821 31451335 -89806195 + L1_Rod LINE L1 3342 3847 -2000 4 824 609 274 39 5 chr12 31451894 31452099 -89805431 - L1_Rod LINE L1 -309 5538 5327 4 824 3401 158 41 20 chr12 31452095 31452729 -89804801 - RMER1B Other Other -3 1063 417 4 824 880 261 30 21 chr12 31452785 31453117 -89804413 - L1_Rod LINE L1 -520 5327 4993 4 824 2730 282 55 45 chr12 31453123 31454605 -89802925 + Lx9 LINE L1 5592 7193 -451 4 824 2967 23 0 23 chr12 31454676 31455030 -89802500 + ORR1A0 LTR MaLR 1 346 0 4 824 14589 45 1 1 chr12 31455030 31456822 -89800708 + ORR1A0-int LTR MaLR 1 1792 0 4 824 2984 26 0 14 chr12 31456822 31457173 -89800357 + ORR1A0 LTR MaLR 1 346 0 4 12 243 275 68 27 chr12 31457211 31457357 -89800173 + Lx9 LINE L1 7350 7501 -143 4 825 605 299 0 14 chr12 31457463 31457602 -89799928 - B1_Mur1 SINE Alu -12 137 1 4 825 379 100 14 14 chr12 31457609 31457680 -89799850 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 4 825 513 0 0 0 chr12 31457773 31457830 -89799700 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 825 2005 223 97 39 chr12 31458057 31458706 -89798824 + RMER6C LTR ERVK 1 687 -3 4 825 312 310 41 80 chr12 31460188 31460510 -89797020 + MTEb LTR MaLR 54 379 0 4 825 555 298 13 0 chr12 31461445 31461596 -89795934 - MTD LTR MaLR -15 404 252 4 825 544 214 17 17 chr12 31461586 31461705 -89795825 - MTD LTR MaLR -300 119 1 4 825 891 0 0 0 chr12 31461843 31461942 -89795588 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 4 825 252 86 0 0 chr12 31461943 31461978 -89795552 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 4 825 1697 286 123 36 chr12 31461991 31462749 -89794781 + Lx8 LINE L1 6507 7330 -143 4 825 24 0 0 0 chr12 31463081 31463105 -89794425 + AT_rich Low_complexity Low_complexity 1 24 0 4 825 1210 264 94 24 chr12 31463635 31464008 -89793522 - MTD LTR MaLR -3 416 18 4 825 1233 284 124 16 chr12 31464047 31465779 -89791751 + L1M4c LINE L1 2329 4292 -2087 4 825 255 173 0 0 chr12 31465820 31465872 -89791658 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 825 313 299 159 0 chr12 31465887 31466044 -89791486 + L1M4c LINE L1 4366 4547 -1832 4 825 26 0 0 0 chr12 31466101 31466127 -89791403 + AT_rich Low_complexity Low_complexity 1 26 0 4 825 645 14 0 0 chr12 31466179 31466253 -89791277 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 825 390 276 0 0 chr12 31466288 31466375 -89791155 - B3 SINE B2 -128 88 2 4 825 566 74 102 0 chr12 31469068 31469176 -89788354 + L1_Mus3 LINE L1 6492 6610 -28 5 825 7605 73 0 3 chr12 31469175 31470615 -89786915 + L1_Mus1 LINE L1 5138 6654 0 5 825 447 312 67 26 chr12 31471151 31471345 -89786185 - MER90a LTR ERV1 -95 519 318 5 825 3406 87 4 2 chr12 31471380 31471851 -89785679 + L1_Mus3 LINE L1 6164 6635 -3 5 825 243 186 34 0 chr12 31471867 31471926 -89785604 - L1_Mur3 LINE L1 -1657 4223 4163 5 825 240 226 134 41 chr12 31472055 31472152 -89785378 - MER90a LTR ERV1 -462 113 8 5 825 1935 30 0 0 chr12 31473341 31473578 -89783952 + L1_Mm LINE L1 5485 5721 -162 5 825 210 306 50 10 chr12 31473737 31473836 -89783694 - MER5B DNA MER1_type -1 177 75 5 825 1052 191 215 10 chr12 31474638 31474945 -89782585 - ORR1D1 LTR MaLR 0 374 5 5 825 1546 207 32 52 chr12 31476019 31476365 -89781165 + ORR1D1 LTR MaLR 11 349 -25 5 825 6262 99 32 16 chr12 31476861 31477801 -89779729 - Lx3_Mus LINE L1 -8 7001 6047 5 825 21 71 0 0 chr12 31477969 31478011 -89779519 + AT_rich Low_complexity Low_complexity 1 42 0 5 825 28 29 0 0 chr12 31478072 31478107 -89779423 + AT_rich Low_complexity Low_complexity 1 35 0 5 825 223 115 16 32 chr12 31478137 31478200 -89779330 + A-rich Low_complexity Low_complexity 5 66 0 5 825 963 158 89 64 chr12 31479016 31479280 -89778250 - MTC LTR MaLR 0 421 153 5 825 246 62 0 0 chr12 31479282 31479314 -89778216 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 825 1160 284 28 9 chr12 31479314 31479631 -89777899 - Lx5 LINE L1 -20 7030 6708 5 825 640 172 41 0 chr12 31479632 31479754 -89777776 - MTC LTR MaLR -211 210 84 5 825 3163 45 15 0 chr12 31479766 31480163 -89777367 - L1_Mus1 LINE L1 0 6567 6165 5 825 549 165 0 11 chr12 31480186 31480278 -89777252 - MTC LTR MaLR -325 96 6 5 825 358 333 67 6 chr12 31480347 31480525 -89777005 + L1M5 LINE L1 5091 5279 -867 5 825 1901 137 10 103 chr12 31481601 31481991 -89775539 - ORR1B1 LTR MaLR 0 394 41 5 825 576 106 0 0 chr12 31482038 31482123 -89775407 + (GGGAA)n Simple_repeat Simple_repeat 2 86 0 5 825 400 309 120 58 chr12 31482599 31482857 -89774673 - MLT1A LTR MaLR -14 360 87 5 825 2487 230 42 40 chr12 31482919 31483106 -89774424 - Lx9 LINE L1 -2 7642 7438 5 825 213 94 0 0 chr12 31483106 31483138 -89774392 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 825 2487 230 42 40 chr12 31483138 31483690 -89773840 - Lx9 LINE L1 -207 7437 6902 5 825 536 324 60 36 chr12 31485324 31485574 -89771956 + MER2 DNA MER2_type 3 258 -87 5 825 196 214 71 0 chr12 31486259 31486315 -89771215 - L2c LINE L2 -67 3320 3261 5 825 20421 175 55 32 chr12 31486605 31492879 -89764651 + Lx6 LINE L1 303 6734 -726 5 825 3280 99 12 28 chr12 31492890 31493389 -89764141 + Lx3B LINE L1 6206 6696 -277 5 825 2119 125 42 3 chr12 31493381 31493734 -89763796 + Lx3B LINE L1 6602 6968 -5 5 825 224 59 0 29 chr12 31493757 31493792 -89763738 + (TAA)n Simple_repeat Simple_repeat 1 34 0 5 825 2246 231 78 18 chr12 31493803 31494449 -89763081 + Lx6 LINE L1 6749 7696 0 5 825 198 0 0 0 chr12 31495191 31495213 -89762317 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 825 280 253 36 12 chr12 31495920 31496004 -89761526 + CT-rich Low_complexity Low_complexity 2 87 0 5 825 2294 176 18 5 chr12 31496684 31497085 -89760445 - Lx5 LINE L1 -3 7047 6642 5 825 1201 68 0 0 chr12 31498269 31498416 -89759114 + B1_Mus2 SINE Alu 1 147 0 5 825 459 0 0 0 chr12 31498741 31498792 -89758738 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 825 245 330 105 37 chr12 31503446 31503686 -89753844 + L1M4c LINE L1 2027 2238 -4612 1 825 186 43 0 0 chr12 31503689 31503712 -89753818 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 825 5000 108 13 20 chr12 31503952 31504711 -89752819 - Lx LINE L1 0 6654 5901 3 825 4023 93 20 0 chr12 31504711 31505410 -89752120 - L1VL4 LINE L1 -2168 3718 3009 4 825 36790 6 0 0 chr12 31505406 31510779 -89746751 + L1Md_A LINE L1 214 5586 -297 5 825 8927 6 0 3 chr12 31510779 31511777 -89745753 + L1Md_A LINE L1 5587 6581 -1 5 825 236 53 26 0 chr12 31511780 31511818 -89745712 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 825 11590 102 22 13 chr12 31511820 31514275 -89743255 - L1VL4 LINE L1 -890 3024 548 4 825 448 337 151 16 chr12 31514483 31514788 -89742742 + ORR1E LTR MaLR 3 348 -11 7 825 1216 342 108 57 chr12 31514793 31515590 -89741940 + ORR1E-int LTR MaLR 6 843 -737 7 825 1272 259 53 19 chr12 31515612 31515935 -89741595 + MTD LTR MaLR 41 374 -45 8 825 599 292 164 34 chr12 31515951 31516147 -89741383 + L1M4c LINE L1 2866 3061 -3784 1 825 1177 55 7 0 chr12 31516147 31516293 -89741237 + B1_Mus1 SINE Alu 1 147 -1 9 825 599 292 164 34 chr12 31516293 31517337 -89740193 + L1M4c LINE L1 3062 4266 -2579 1 825 1260 259 52 21 chr12 31517571 31517898 -89739632 + ORR1D2 LTR MaLR 1 337 -33 1 825 233 293 0 26 chr12 31517878 31517955 -89739575 + RMER21B LTR ERV1 85 159 -683 1 825 343 326 159 26 chr12 31517988 31518183 -89739347 + RMER21B LTR ERV1 347 567 -275 1 825 315 155 0 49 chr12 31518246 31518307 -89739223 + ORR1D1 LTR MaLR 312 369 -5 1 825 360 258 113 22 chr12 31518498 31518757 -89738773 + L1M4c LINE L1 4258 4549 -2299 1 825 1027 277 87 79 chr12 31518770 31519056 -89738474 - MTD LTR MaLR 0 419 128 1 825 1322 68 6 22 chr12 31519056 31519236 -89738294 + B2_Mm2 SINE B2 1 177 -18 1 825 1027 277 87 79 chr12 31519236 31519365 -89738165 - MTD LTR MaLR -292 127 1 1 825 570 318 50 17 chr12 31519366 31519785 -89737745 + L1M4c LINE L1 4557 4989 -1853 1 825 226 159 0 22 chr12 31519790 31519835 -89737695 + ZP3AR Satellite Satellite 39 82 -130 1 825 878 0 46 0 chr12 31519795 31519904 -89737626 + BC1_Mm scRNA scRNA 1 114 -38 1 825 372 301 10 10 chr12 31519986 31520090 -89737440 + PB1D10 SINE Alu 1 104 -13 1 825 346 248 182 9 chr12 31520105 31520215 -89737315 + RSINE1 SINE B4 2 130 -35 1 825 195 69 0 0 chr12 31520221 31520250 -89737280 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 825 1098 301 41 17 chr12 31520260 31520848 -89736682 + L1M4c LINE L1 5067 5668 -1174 1 825 558 0 0 0 chr12 31520865 31520927 -89736603 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 2 825 530 272 51 7 chr12 31521672 31521809 -89735721 - ID_B1 SINE B4 -80 144 2 2 825 638 213 40 94 chr12 31521985 31522208 -89735322 + Lx5 LINE L1 6831 7041 -9 2 825 1305 182 25 36 chr12 31523910 31524184 -89733346 + RLTR46 LTR ERVK 44 314 -6 2 825 494 236 78 16 chr12 31524205 31524334 -89733196 + B3A SINE B2 2 138 -60 2 825 531 0 0 0 chr12 31524336 31524395 -89733135 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 825 1199 283 118 16 chr12 31524580 31525456 -89732074 - L1MB3 LINE L1 -87 6096 5128 2 825 8001 108 48 0 chr12 31525465 31526713 -89730817 - Lx2 LINE L1 0 6997 5722 2 825 362 311 19 0 chr12 31527001 31527104 -89730426 - B3A SINE B2 -93 105 1 2 825 464 233 250 12 chr12 31527303 31527559 -89729971 - L1MB3 LINE L1 -1112 5028 4712 2 825 311 272 49 63 chr12 31527779 31528124 -89729406 + L1MA8 LINE L1 5121 5481 -810 2 825 247 173 134 8 chr12 31528165 31528299 -89729231 + Lx5 LINE L1 6898 7048 -2 3 825 331 264 142 9 chr12 31528428 31528661 -89728869 + L1MA8 LINE L1 6006 6269 -22 2 825 3020 107 62 0 chr12 31528949 31529417 -89728113 - L1Md_F LINE L1 -5729 790 294 3 825 5480 68 0 0 chr12 31529416 31530156 -89727374 + L1Md_F2 LINE L1 4847 5586 -297 3 825 8140 45 0 4 chr12 31530156 31531149 -89726381 + L1Md_F2 LINE L1 5587 6575 -7 3 825 459 177 10 0 chr12 31532329 31532425 -89725105 - Lx9 LINE L1 -7 7637 7541 3 825 1842 195 98 38 chr12 31532434 31532882 -89724648 - Lx9 LINE L1 -201 7443 6969 3 825 1482 180 45 48 chr12 31532877 31533233 -89724297 + Lx9 LINE L1 6614 6968 -676 3 825 1317 250 125 3 chr12 31533335 31533704 -89723826 - MTD LTR MaLR -1 418 5 3 825 2627 297 79 32 chr12 31534389 31535453 -89722077 + Lx8 LINE L1 6218 7331 -142 3 825 680 308 43 29 chr12 31536003 31536529 -89721001 + L1M4 LINE L1 3744 4276 -1870 3 825 230 300 145 12 chr12 31538497 31538669 -89718861 - MLT1D LTR MaLR -2 503 309 3 825 235 291 97 21 chr12 31539223 31539367 -89718163 - L1M4 LINE L1 -543 5621 5467 3 825 301 321 128 21 chr12 31539910 31540152 -89717378 - L1MC LINE L1 -1404 4742 4475 3 825 594 280 113 38 chr12 31540181 31540767 -89716763 - L1M4 LINE L1 -1727 4419 3790 3 825 374 343 5 43 chr12 31541064 31541250 -89716280 - MTE2a LTR MaLR -12 367 189 4 825 239 324 0 0 chr12 31541352 31541423 -89716107 - MTE2a LTR MaLR -229 150 80 4 825 357 145 0 0 chr12 31541425 31541487 -89716043 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 825 509 324 132 31 chr12 31541558 31542535 -89714995 - L1M4 LINE L1 -2693 3453 2126 3 825 520 294 88 44 chr12 31542770 31543112 -89714418 + ORR1E LTR MaLR 1 357 -2 4 825 1843 266 111 36 chr12 31543462 31543784 -89713746 - Lx8 LINE L1 -5 7468 7129 4 825 216 0 0 0 chr12 31543784 31543808 -89713722 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 825 1843 266 111 36 chr12 31543808 31544272 -89713258 - Lx8 LINE L1 -345 7128 6624 4 825 835 232 73 35 chr12 31544312 31544577 -89712953 - Lx7 LINE L1 0 7696 7422 4 825 279 54 0 0 chr12 31544577 31544614 -89712916 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 825 835 232 73 35 chr12 31544614 31544665 -89712865 - Lx7 LINE L1 -275 7421 7370 4 825 973 297 34 9 chr12 31544703 31545029 -89712501 - Lx8 LINE L1 -967 6506 6173 4 825 405 0 0 0 chr12 31548358 31548403 -89709127 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 825 543 31 0 0 chr12 31548792 31548857 -89708673 + (GGA)n Simple_repeat Simple_repeat 2 66 0 4 825 1620 0 0 0 chr12 31548857 31549037 -89708493 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 825 204 40 0 0 chr12 31551740 31551765 -89705765 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 825 1005 116 0 7 chr12 31551945 31552092 -89705438 + B1_Mus1 SINE Alu 3 148 0 5 825 825 115 13 20 chr12 31552266 31552417 -89705113 + (GGAA)n Simple_repeat Simple_repeat 4 153 0 5 825 220 39 0 0 chr12 31552417 31552443 -89705087 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 825 6257 122 6 10 chr12 31553417 31554356 -89703174 + Lx4A LINE L1 6122 7057 -1 5 825 24 0 0 0 chr12 31554359 31554383 -89703147 + AT_rich Low_complexity Low_complexity 1 24 0 5 825 2433 104 8 34 chr12 31554842 31555221 -89702309 + L1_Mus3 LINE L1 6263 6631 -7 5 825 474 268 7 48 chr12 31556342 31556487 -89701043 + RSINE1 SINE B4 23 161 -4 5 825 293 47 0 23 chr12 31556487 31556531 -89700999 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 825 599 269 63 37 chr12 31559426 31559615 -89697915 + MTE2b LTR MaLR 1 194 -185 5 825 855 309 32 51 chr12 31559653 31560025 -89697505 + MLT1A0 LTR MaLR 1 365 0 6 825 646 204 124 9 chr12 31561818 31562036 -89695494 + L1_Mur3 LINE L1 3140 3382 -2498 6 825 517 359 73 28 chr12 31562037 31562364 -89695166 + MTE-int LTR MaLR 162 503 -1077 6 825 312 313 147 15 chr12 31562427 31562625 -89694905 - MTE-int LTR MaLR -483 1097 874 6 825 1042 318 69 115 chr12 31562769 31563568 -89693962 + MTE-int LTR MaLR 761 1522 -58 6 825 600 276 78 33 chr12 31564101 31564371 -89693159 + B4A SINE B4 1 282 -10 6 825 874 132 33 7 chr12 31566248 31566401 -89691129 - URR1B DNA MER1_type -1 224 68 6 825 1976 196 50 8 chr12 31566401 31566803 -89690727 + MTD LTR MaLR 1 419 0 6 825 252 313 0 50 chr12 31568921 31569062 -89688468 + G-rich Low_complexity Low_complexity 4 137 0 6 825 360 0 0 0 chr12 31570664 31570704 -89686826 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 825 441 0 0 0 chr12 31570704 31570752 -89686778 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 825 236 267 11 65 chr12 31574385 31574477 -89683053 - PB1 SINE Alu -7 120 34 7 825 244 331 29 50 chr12 31575407 31575547 -89681983 + ID_B1 SINE B4 7 143 -81 7 825 24 0 0 0 chr12 31576211 31576235 -89681295 + AT_rich Low_complexity Low_complexity 1 24 0 7 825 218 301 0 27 chr12 31578765 31578840 -89678690 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 7 825 207 0 0 0 chr12 31580448 31580471 -89677059 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 7 825 1025 44 0 0 chr12 31581326 31581462 -89676068 + B1_Mus1 SINE Alu 13 148 0 7 825 1352 62 6 0 chr12 31582184 31582362 -89675168 + L1Md_T LINE L1 6404 6582 0 7 825 571 205 134 0 chr12 31582469 31582596 -89674934 + B1_Mus2 SINE Alu 3 146 -1 7 825 277 75 38 0 chr12 31583366 31583419 -89674111 + (TTATA)n Simple_repeat Simple_repeat 3 57 0 7 825 330 251 10 57 chr12 31583711 31583905 -89673625 + RMER17C LTR ERVK 89 273 -137 7 825 731 214 203 22 chr12 31584315 31584497 -89673033 + B3 SINE B2 2 216 0 8 825 315 49 0 0 chr12 31584557 31584598 -89672932 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 825 197 65 32 0 chr12 31584598 31584628 -89672902 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 825 273 281 60 73 chr12 31585456 31585606 -89671924 + B1F2 SINE Alu 2 149 0 8 825 216 304 0 102 chr12 31585610 31585698 -89671832 + ID4_ SINE ID 4 82 -1 8 825 9694 87 9 30 chr12 31586170 31587686 -89669844 + Lx3A LINE L1 5498 6978 -3 8 825 21 0 0 0 chr12 31587692 31587713 -89669817 + AT_rich Low_complexity Low_complexity 1 21 0 8 825 3505 50 9 18 chr12 31587842 31588286 -89669244 - L1_Mus2 LINE L1 0 6566 6127 8 826 306 311 207 29 chr12 31590577 31590819 -89666711 - MER77 LTR ERVL -19 588 304 8 826 183 80 0 0 chr12 31591992 31592017 -89665513 + (A)n Simple_repeat Simple_repeat 1 25 0 8 826 327 25 0 0 chr12 31592178 31592218 -89665312 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 826 324 130 0 0 chr12 31592220 31592289 -89665241 + (GA)n Simple_repeat Simple_repeat 2 70 0 9 826 700 291 21 132 chr12 31592444 31592769 -89664761 - B4 SINE B4 -2 290 2 9 826 189 0 0 0 chr12 31592769 31592790 -89664740 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 9 826 234 235 201 50 chr12 31593650 31593789 -89663741 + L2 LINE L2 2743 2902 -517 9 826 261 323 63 6 chr12 31593832 31593991 -89663539 + MER58B DNA MER1_type 37 204 -137 9 826 285 253 43 23 chr12 31595901 31595998 -89661532 + ORR1E LTR MaLR 269 359 0 9 826 258 57 37 19 chr12 31597687 31597741 -89659789 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 9 826 1143 75 0 7 chr12 31599173 31599320 -89658210 + B1_Mus1 SINE Alu 3 148 0 9 826 378 265 42 50 chr12 31599389 31599576 -89657954 - MTC LTR MaLR -201 178 1 9 826 12310 148 137 37 chr12 31600308 31603085 -89654445 + Lx7 LINE L1 1308 4362 -1518 1 826 2798 165 25 21 chr12 31603077 31603598 -89653932 + Lx7 LINE L1 5022 5544 -336 1 826 3656 226 82 9 chr12 31603587 31604446 -89653084 + Lx7 LINE L1 5793 6713 -983 1 826 2716 251 25 41 chr12 31604452 31605136 -89652394 + Lx6 LINE L1 6774 7446 -14 1 826 1498 53 11 11 chr12 31605299 31605488 -89652042 - B2_Mm2 SINE B2 -6 189 1 1 826 336 290 142 54 chr12 31605494 31605698 -89651832 + L1M5 LINE L1 5534 5755 -409 1 826 853 53 0 0 chr12 31607900 31608014 -89649516 + B1_Mm SINE Alu 34 147 0 1 826 1229 41 0 0 chr12 31608032 31608178 -89649352 + B1_Mus2 SINE Alu 2 147 0 1 826 808 129 17 34 chr12 31608178 31608354 -89649176 + GA-rich Low_complexity Low_complexity 1 173 0 1 826 24 32 0 0 chr12 31608556 31608587 -89648943 + AT_rich Low_complexity Low_complexity 1 31 0 1 826 746 218 86 5 chr12 31608663 31608861 -89648669 + B3 SINE B2 3 216 0 1 826 441 0 0 0 chr12 31609097 31609146 -89648384 + (GTTTG)n Simple_repeat Simple_repeat 5 53 0 1 826 644 242 31 0 chr12 31609148 31609276 -89648254 - B1_Mur1 SINE Alu -15 134 3 1 826 300 314 68 37 chr12 31611852 31612014 -89645516 - HAL1-3A_ME LINE L1 -417 2441 2275 1 826 22 35 0 0 chr12 31612767 31612796 -89644734 + AT_rich Low_complexity Low_complexity 1 29 0 1 826 1314 209 36 18 chr12 31614520 31614851 -89642679 - RLTR42-int LTR ERVK -4136 1386 1050 1 826 1035 97 0 7 chr12 31615429 31615574 -89641956 - B1_Mm SINE Alu 0 147 4 1 826 5628 126 9 18 chr12 31615653 31616946 -89640584 - Lx LINE L1 -6 6648 5362 1 826 3916 58 76 2 chr12 31616946 31617462 -89640068 + L1_Mus1 LINE L1 6014 6567 0 1 826 180 0 0 0 chr12 31617466 31617486 -89640044 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 1 826 956 167 96 30 chr12 31618290 31618488 -89639042 - RMER15 LTR ERVL -1 574 364 1 826 352 129 81 0 chr12 31618490 31618552 -89638978 - RMER15 LTR ERVL -326 249 183 1 826 1992 107 28 9 chr12 31618741 31619063 -89638467 - Lx3C LINE L1 -346 6627 6300 1 826 3947 70 62 4 chr12 31619063 31619596 -89637934 - L1Md_F2 LINE L1 -1 6581 6018 1 826 347 78 0 0 chr12 31619592 31619676 -89637854 + L1_Mus1 LINE L1 6508 6567 0 1 826 360 156 15 15 chr12 31619815 31619880 -89637650 - RMER15 LTR ERVL -147 428 364 1 826 769 59 0 0 chr12 31619891 31619993 -89637537 - L1Md_F2 LINE L1 -574 6008 5907 1 826 4418 75 55 19 chr12 31619991 31620755 -89636775 - Lx3C LINE L1 -688 6288 5500 1 826 331 262 306 84 chr12 31621046 31621357 -89636173 + RMER21B LTR ERV1 259 716 -126 1 826 331 303 47 8 chr12 31621527 31621621 -89635909 + PB1D10 SINE Alu 4 100 -20 1 826 4967 103 105 67 chr12 31622184 31623151 -89634379 - L1_Mus2 LINE L1 -2 6564 5587 1 826 435 252 59 25 chr12 31624282 31624400 -89633130 - B1_Mur2 SINE Alu -27 122 1 1 826 891 193 90 15 chr12 31625439 31625639 -89631891 + B3 SINE B2 1 215 -1 1 826 204 215 15 30 chr12 31626555 31626622 -89630908 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 1 826 207 0 0 0 chr12 31627415 31627438 -89630092 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 826 31 0 0 0 chr12 31627753 31627784 -89629746 + AT_rich Low_complexity Low_complexity 1 31 0 1 826 26 0 0 0 chr12 31627964 31627990 -89629540 + AT_rich Low_complexity Low_complexity 1 26 0 1 826 873 195 53 10 chr12 31627995 31628202 -89629328 + B3 SINE B2 1 216 0 1 826 646 53 21 0 chr12 31628391 31628486 -89629044 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 826 8118 132 27 21 chr12 31629626 31631835 -89625695 - Lx2B LINE L1 -20 6980 4728 1 826 180 0 0 0 chr12 31631835 31631855 -89625675 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 826 6905 140 29 20 chr12 31631855 31631951 -89625579 - Lx2B LINE L1 -1150 4727 4632 1 826 180 0 0 0 chr12 31631951 31631971 -89625559 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 826 3185 123 23 0 chr12 31631977 31632507 -89625023 + L1_Mur2 LINE L1 4070 4611 -1266 1 826 251 245 56 56 chr12 31632540 31632700 -89624830 - Lx9 LINE L1 -27 7617 7458 1 826 478 98 12 12 chr12 31632705 31632788 -89624742 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 826 1521 280 101 68 chr12 31632827 31632887 -89624643 - Lx9 LINE L1 -501 7143 7078 1 826 192 97 0 0 chr12 31632887 31632918 -89624612 + (TATTG)n Simple_repeat Simple_repeat 4 34 0 1 826 1521 280 101 68 chr12 31632918 31633650 -89623880 - Lx9 LINE L1 -567 7077 6325 1 826 287 237 216 0 chr12 31633917 31634014 -89623516 - Lx9 LINE L1 -1740 5904 5787 1 826 5120 239 40 138 chr12 31634019 31634257 -89623273 - Lx9 LINE L1 -259 5588 5418 1 826 1127 54 0 75 chr12 31634257 31634416 -89623114 - B1_Mm SINE Alu 0 147 1 1 826 5120 239 40 138 chr12 31634416 31635486 -89622044 - Lx9 LINE L1 -430 5417 4367 1 826 643 294 35 5 chr12 31635486 31635688 -89621842 - B3 SINE B2 -8 208 1 1 826 5120 239 40 138 chr12 31635688 31636709 -89620821 - Lx9 LINE L1 -1481 4366 3495 1 826 360 0 0 0 chr12 31636709 31636749 -89620781 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 826 5120 239 40 138 chr12 31636749 31637157 -89620373 - Lx9 LINE L1 -2353 3494 3095 1 826 731 181 20 27 chr12 31637157 31637305 -89620225 - B1_Mus1 SINE Alu -1 147 1 1 826 5120 239 40 138 chr12 31637305 31637466 -89620064 - Lx9 LINE L1 -2753 3094 2972 1 826 1633 271 29 78 chr12 31637628 31638284 -89619246 - Lx9 LINE L1 -266 7378 6755 1 826 5600 230 40 31 chr12 31638299 31638838 -89618692 - Lx9 LINE L1 -2866 2981 2455 1 826 336 48 0 0 chr12 31638838 31638880 -89618650 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 826 5600 231 44 28 chr12 31638880 31640372 -89617158 - Lx9 LINE L1 -3393 2454 923 1 826 1040 267 150 14 chr12 31640551 31640917 -89616613 + MTD LTR MaLR 1 398 -21 1 826 648 181 17 0 chr12 31641734 31641850 -89615680 - B1_Mur4 SINE Alu -32 118 1 1 826 319 275 17 84 chr12 31641747 31641866 -89615664 - MT2B LTR ERVL -344 257 147 1 826 264 105 31 122 chr12 31642220 31642318 -89615212 + T-rich Low_complexity Low_complexity 2 90 0 1 826 300 323 126 5 chr12 31642681 31642880 -89614650 + Charlie2b DNA MER1_type 2498 2720 -62 1 826 22 0 0 0 chr12 31643107 31643129 -89614401 + AT_rich Low_complexity Low_complexity 1 22 0 1 826 3778 73 2 4 chr12 31643130 31643625 -89613905 - L1Md_F2 LINE L1 -16 6566 6073 1 826 463 222 12 0 chr12 31644412 31644493 -89613037 - RSINE1 SINE B4 -31 134 53 1 826 21 36 0 0 chr12 31644630 31644658 -89612872 + AT_rich Low_complexity Low_complexity 1 28 0 1 826 204 191 64 0 chr12 31645972 31646019 -89611511 + MIR SINE MIR 86 135 -127 1 826 2327 80 3 109 chr12 31646236 31646602 -89610928 + ORR1A2 LTR MaLR 1 327 0 1 826 4610 202 81 48 chr12 31646602 31647536 -89609994 + ORR1A2-int LTR MaLR 1 987 -976 1 826 2342 62 157 3 chr12 31647536 31647874 -89609656 + L1_Mus2 LINE L1 6177 6566 0 1 826 4610 202 81 48 chr12 31647874 31648210 -89609320 + ORR1A2-int LTR MaLR 988 1313 -650 1 826 6654 53 1 7 chr12 31648270 31649141 -89608389 + L1VL1 LINE L1 141 1006 -5416 1 826 3908 40 0 11 chr12 31649141 31649618 -89607912 + L1_Mus1 LINE L1 6096 6567 0 1 826 7914 43 2 0 chr12 31649901 31651104 -89606426 - L1Md_F2 LINE L1 0 6582 5378 1 826 23 68 0 0 chr12 31652166 31652210 -89605320 + AT_rich Low_complexity Low_complexity 1 44 0 1 826 970 234 83 28 chr12 31652259 31652584 -89604946 + RLTR15 LTR ERVK 1 343 -16 1 826 1997 190 40 15 chr12 31653556 31653951 -89603579 + MTD LTR MaLR 1 405 -14 1 826 3363 28 8 0 chr12 31654814 31655207 -89602323 - MTA_Mm LTR MaLR 0 396 1 1 826 310 316 22 8 chr12 31655208 31655342 -89602188 + Lx9 LINE L1 7338 7473 -171 1 826 989 163 26 280 chr12 31655514 31655645 -89601885 - ORR1C1 LTR MaLR -2 376 250 1 826 180 0 0 0 chr12 31655645 31655665 -89601865 + (CAGG)n Simple_repeat Simple_repeat 3 22 0 1 826 989 163 26 280 chr12 31655665 31656037 -89601493 - ORR1C1 LTR MaLR -129 249 1 1 826 461 238 48 29 chr12 31656890 31656994 -89600536 + ORR1E LTR MaLR 3 108 -251 1 826 232 278 30 100 chr12 31657019 31657119 -89600411 + ORR1E LTR MaLR 252 344 -35 1 826 9015 140 8 0 chr12 31657119 31658645 -89598885 - L1_Mm LINE L1 -32 5851 4314 1 826 34082 69 4 6 chr12 31658660 31664611 -89592919 - L1Md_F2 LINE L1 -14 6568 632 1 826 4714 128 8 16 chr12 31664605 31665439 -89592091 - L1_Mur2 LINE L1 -1579 4298 3471 1 826 1459 47 0 21 chr12 31665439 31665708 -89591822 - L1Md_F2 LINE L1 0 6582 6391 1 826 2902 61 0 0 chr12 31665708 31666102 -89591428 + L1_Mm LINE L1 3787 4180 -1703 1 826 15732 111 17 5 chr12 31666114 31669062 -89588468 - L1VL4 LINE L1 -417 3142 163 1 826 960 101 0 21 chr12 31669517 31669659 -89587871 + MTB LTR MaLR 210 348 -52 1 826 784 166 6 6 chr12 31669661 31669825 -89587705 + GA-rich Low_complexity Low_complexity 2 165 0 1 826 2635 96 40 11 chr12 31669938 31670316 -89587214 + Lx LINE L1 6259 6647 -7 1 826 1474 256 63 55 chr12 31670538 31670743 -89586787 + MTD LTR MaLR 6 193 -226 1 826 878 177 13 26 chr12 31670743 31670894 -89586636 + B1_Mur3 SINE Alu 1 149 0 1 826 1474 256 63 55 chr12 31670894 31671085 -89586445 + MTD LTR MaLR 194 405 -14 1 826 180 0 0 0 chr12 31671157 31671177 -89586353 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 826 2273 133 56 17 chr12 31671177 31671535 -89585995 - Lx4B LINE L1 -9 7049 6678 1 826 230 128 43 0 chr12 31672379 31672426 -89585104 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 1 826 497 309 168 35 chr12 31674137 31674833 -89582697 - L1MB3 LINE L1 0 6171 5408 1 826 606 51 0 0 chr12 31675438 31675517 -89582013 - B1_Mur4 SINE Alu 0 150 72 1 826 320 232 0 50 chr12 31675517 31675537 -89581993 - ID_B1 SINE B4 -1 222 129 1 826 36225 35 0 0 chr12 31676291 31681949 -89575581 + L1Md_T LINE L1 1 5589 -297 1 826 9454 10 0 4 chr12 31681949 31682982 -89574548 + L1Md_T LINE L1 5590 6585 0 1 826 838 254 5 72 chr12 31684065 31684273 -89573257 - B3A SINE B2 -4 194 1 1 826 1118 122 0 6 chr12 31685596 31685777 -89571753 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 826 21 57 0 0 chr12 31685828 31685863 -89571667 + AT_rich Low_complexity Low_complexity 1 35 0 1 826 1064 152 3 0 chr12 31686800 31687189 -89570341 + (TG)n Simple_repeat Simple_repeat 1 390 0 1 826 2245 236 136 80 chr12 31688165 31688979 -89568551 - RMER13A LTR ERVK 0 860 1 1 826 5276 68 2 0 chr12 31689158 31689779 -89567751 - L1_Mus2 LINE L1 -1 6565 5944 1 826 1941 156 192 3 chr12 31690557 31690911 -89566619 + MTC LTR MaLR 1 421 0 1 826 203 0 0 36 chr12 31691030 31691058 -89566472 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 826 1151 90 14 0 chr12 31691062 31691206 -89566324 - B1_Mus2 SINE Alu 0 147 2 1 826 289 319 64 0 chr12 31691207 31691348 -89566182 - L1MC LINE L1 -982 5164 5015 1 826 33 0 0 0 chr12 31693699 31693732 -89563798 + AT_rich Low_complexity Low_complexity 1 33 0 1 826 312 305 258 0 chr12 31693825 31693953 -89563577 + RSINE1 SINE B4 1 161 -4 1 826 21 0 0 0 chr12 31693991 31694012 -89563518 + AT_rich Low_complexity Low_complexity 1 21 0 2 826 788 293 109 25 chr12 31694287 31694570 -89562960 - MTE2a LTR MaLR -14 365 59 2 826 282 320 82 67 chr12 31696724 31696858 -89560672 + ORR1E LTR MaLR 1 136 -223 2 826 316 331 57 0 chr12 31698017 31698141 -89559389 + ID_B1 SINE B4 93 223 -1 2 826 284 359 13 0 chr12 31698151 31698229 -89559301 + ID4_ SINE ID 3 81 -2 2 826 4593 118 42 27 chr12 31698407 31699153 -89558377 + L1_Mur2 LINE L1 3294 4050 -1827 2 826 1318 237 26 75 chr12 31699148 31699532 -89557998 + Lx7 LINE L1 7043 7407 -289 2 826 414 0 0 0 chr12 31699543 31699589 -89557941 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 826 492 233 7 56 chr12 31699620 31699775 -89557755 + Lx7 LINE L1 7561 7692 -4 2 826 3086 35 69 0 chr12 31699909 31700286 -89557244 + L1Md_F2 LINE L1 5184 5586 -297 2 826 8947 31 3 3 chr12 31700286 31701282 -89556248 + L1Md_F2 LINE L1 5587 6582 0 2 826 432 0 0 0 chr12 31701710 31701758 -89555772 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 826 4039 80 0 10 chr12 31701918 31702413 -89555117 + L1_Mus1 LINE L1 6078 6567 0 2 826 817 164 0 33 chr12 31702645 31702796 -89554734 - L1_Mur3 LINE L1 -1683 4197 4052 2 826 969 183 109 0 chr12 31702796 31702971 -89554559 + MTC LTR MaLR 163 356 -65 2 826 243 0 0 0 chr12 31705212 31705239 -89552291 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 826 1070 80 6 0 chr12 31705770 31705933 -89551597 + (TC)n Simple_repeat Simple_repeat 1 164 0 2 826 222 205 0 0 chr12 31705948 31705987 -89551543 + GA-rich Low_complexity Low_complexity 4 42 0 2 826 1332 212 41 25 chr12 31706025 31706344 -89551186 - RMER5 LTR ERV1 -210 324 1 2 826 930 19 0 0 chr12 31707235 31707343 -89550187 + (TTC)n Simple_repeat Simple_repeat 1 108 0 2 826 306 0 0 0 chr12 31709010 31709044 -89548486 + (T)n Simple_repeat Simple_repeat 1 34 0 2 826 2284 221 52 19 chr12 31709813 31710353 -89547177 - RLTR20B1 LTR ERVK -5 558 1 2 826 227 325 47 35 chr12 31711537 31711623 -89545907 + LTR81A LTR ERV1? 832 918 -432 2 826 3143 123 29 17 chr12 31711906 31712384 -89545146 + Lx LINE L1 6166 6649 -5 2 826 405 244 310 6 chr12 31712702 31712873 -89544657 + ID_B1 SINE B4 1 223 -1 2 826 447 19 0 0 chr12 31712879 31712931 -89544599 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 2 826 215 133 49 105 chr12 31712931 31713074 -89544456 + GA-rich Low_complexity Low_complexity 1 135 0 2 826 437 198 0 9 chr12 31713617 31713724 -89543806 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 826 324 0 0 0 chr12 31713889 31713925 -89543605 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 826 641 251 200 124 chr12 31713977 31714491 -89543039 - RMER4B LTR ERVK -16 569 17 2 826 3462 244 45 25 chr12 31714499 31715363 -89542167 + Lx9 LINE L1 6371 7251 -393 2 826 1274 216 39 4 chr12 31715497 31715757 -89541773 + Lx5 LINE L1 6641 6909 -141 2 826 235 370 48 0 chr12 31715942 31716045 -89541485 + MIR SINE MIR 70 183 -93 2 826 1468 48 26 5 chr12 31716298 31716488 -89541042 + L1_Mus3 LINE L1 6438 6631 -7 2 826 1848 261 142 16 chr12 31716632 31717314 -89540216 - L1MB3 LINE L1 -59 6124 5357 2 826 770 293 118 19 chr12 31717312 31717736 -89539794 - L1M4 LINE L1 -957 5189 4724 2 826 243 368 8 8 chr12 31718474 31718592 -89538938 + L1MC4 LINE L1 6813 6930 -1112 2 826 1218 36 22 0 chr12 31718593 31718731 -89538799 + B1_Mm SINE Alu 2 142 -5 2 826 372 77 0 0 chr12 31718732 31718784 -89538746 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 826 480 35 0 0 chr12 31718784 31718842 -89538688 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 103 5284 66 3 8 chr12 31718842 31719487 -89538043 + L1Md_F2 LINE L1 5936 6577 -5 2 827 279 186 49 33 chr12 31719509 31719631 -89537899 + (TA)n Simple_repeat Simple_repeat 1 124 0 2 827 249 33 0 0 chr12 31719865 31719895 -89537635 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2 827 1140 181 154 63 chr12 31720980 31721030 -89536500 + Lx9 LINE L1 994 1043 -6565 2 827 1123 170 89 33 chr12 31721030 31721243 -89536287 - URR1B DNA MER1_type 0 225 1 2 827 2139 191 136 29 chr12 31721243 31721932 -89535598 + Lx9 LINE L1 1044 1793 -4054 2 827 1728 186 6 33 chr12 31721951 31722317 -89535213 + Lx9 LINE L1 2557 2912 -2935 2 827 2143 173 20 7 chr12 31722721 31723416 -89534114 + L1_Mur3 LINE L1 892 1595 -4282 2 827 6814 90 8 3 chr12 31723403 31724375 -89533155 - Lx3B LINE L1 -946 4940 3964 2 827 6899 99 29 9 chr12 31724369 31725979 -89531551 + Lx3B LINE L1 4936 6562 -411 2 827 4618 133 41 3 chr12 31725979 31726704 -89530826 + Lx LINE L1 5901 6653 -1 2 827 6899 102 29 9 chr12 31726704 31726747 -89530783 + Lx3B LINE L1 6563 6600 -373 2 827 1392 199 66 53 chr12 31726739 31727116 -89530414 + Lx9 LINE L1 3623 4004 -1843 2 827 1201 214 84 13 chr12 31727117 31727553 -89529977 + Lx9 LINE L1 5594 6104 -1540 2 827 21 0 0 0 chr12 31727592 31727613 -89529917 + AT_rich Low_complexity Low_complexity 1 21 0 2 827 585 160 0 0 chr12 31727627 31727733 -89529797 + (TG)n Simple_repeat Simple_repeat 1 106 0 2 827 3430 208 46 19 chr12 31727733 31728455 -89529075 + Lx9 LINE L1 6487 7227 -417 2 827 514 250 0 0 chr12 31728774 31728874 -89528656 + RodERV21-int LTR ERV1 1 100 -4891 2 827 1832 225 79 38 chr12 31728847 31729401 -89528129 + RodERV21-int LTR ERV1 292 868 -4123 2 827 39318 4 0 0 chr12 31730510 31735974 -89521556 + L1Md_A LINE L1 122 5586 -297 2 827 9222 2 0 0 chr12 31735974 31736970 -89520560 + L1Md_A LINE L1 5587 6582 0 2 827 791 194 0 7 chr12 31737169 31737304 -89520226 + RodERV21-int LTR ERV1 839 972 -4019 2 827 991 245 85 8 chr12 31737305 31737552 -89519978 + Lx9 LINE L1 7200 7465 -179 2 827 207 0 0 0 chr12 31737552 31737575 -89519955 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 827 270 212 35 0 chr12 31737587 31737672 -89519858 + Lx9 LINE L1 7532 7619 -25 2 827 900 94 0 0 chr12 31738253 31738381 -89519149 + (TATATG)n Simple_repeat Simple_repeat 2 129 0 2 827 1159 288 62 50 chr12 31738487 31738663 -89518867 - RMER5 LTR ERV1 0 534 373 2 827 502 103 0 22 chr12 31738663 31738752 -89518778 + L1Md_F2 LINE L1 6494 6580 -2 2 827 1159 288 62 50 chr12 31738752 31739091 -89518439 - RMER5 LTR ERV1 -162 372 13 2 827 2766 183 13 44 chr12 31739111 31739638 -89517892 - RLTR18B LTR ERVK 0 512 2 2 827 1158 138 21 37 chr12 31739639 31739827 -89517703 - RLTR18-int LTR ERVK 0 5361 5177 2 827 186 43 0 0 chr12 31740764 31740787 -89516743 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 827 3084 144 24 12 chr12 31741210 31741703 -89515827 - RLTR19 LTR ERVK 0 499 1 2 827 3654 195 80 34 chr12 31742428 31743731 -89513799 + RMER1B Other Other 16 1066 0 2 827 31 68 0 0 chr12 31743747 31743806 -89513724 + AT_rich Low_complexity Low_complexity 1 59 0 2 827 1545 42 16 11 chr12 31743849 31744039 -89513491 - B2_Mm2 SINE B2 -3 192 2 2 827 1034 63 28 22 chr12 31745019 31745198 -89512332 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 827 738 325 88 54 chr12 31745749 31745977 -89511553 - Lx9 LINE L1 -1318 6155 5915 2 827 258 32 0 0 chr12 31745977 31746008 -89511522 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 827 1916 302 71 34 chr12 31746008 31746385 -89511145 - Lx9 LINE L1 -1725 5919 5547 2 827 1228 48 0 0 chr12 31746385 31746532 -89510998 + B1_Mus2 SINE Alu 1 147 0 2 827 834 123 0 0 chr12 31746537 31746667 -89510863 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 2 827 1916 308 40 48 chr12 31746667 31747205 -89510325 - Lx9 LINE L1 -334 5546 4999 2 827 8833 130 16 31 chr12 31747192 31750224 -89507306 - L1_Mus1 LINE L1 0 6567 3629 2 827 4284 64 2 0 chr12 31750280 31750857 -89506673 - Lx3A LINE L1 -1042 5939 5366 2 827 2459 141 63 118 chr12 31750857 31751507 -89506023 - RMER6C LTR ERVK -76 614 1 2 827 949 246 102 27 chr12 31751508 31751790 -89505740 - L1_Mus1 LINE L1 -3018 2862 2556 2 827 360 0 0 0 chr12 31751790 31751830 -89505700 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 827 949 246 102 27 chr12 31751830 31751881 -89505649 - L1_Mus1 LINE L1 -3325 2555 2505 2 827 261 0 0 0 chr12 31752721 31752750 -89504780 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 827 276 127 0 68 chr12 31752761 31752820 -89504710 - MT2B LTR ERVL 0 601 547 2 827 672 277 42 2 chr12 31752920 31753186 -89504344 - MT2B LTR ERVL -40 561 98 2 827 618 197 15 23 chr12 31753188 31753318 -89504212 - MT2B LTR ERVL -404 129 1 2 827 729 168 8 0 chr12 31753320 31753451 -89504079 - MERVL_2A-int LTR ERVL -2 5759 5628 2 827 546 167 9 38 chr12 31753457 31753563 -89503967 - MERVL_2A-int LTR ERVL -71 5690 5588 2 827 1218 146 45 0 chr12 31753561 31753760 -89503770 - MERVL_2A-int LTR ERVL -366 5395 5188 2 827 789 195 89 31 chr12 31753760 31753951 -89503579 + URR1B DNA MER1_type 1 202 -23 2 827 4313 173 35 2 chr12 31753951 31754844 -89502686 - MERVL_2A-int LTR ERVL -2258 3503 2439 2 827 3134 70 8 0 chr12 31754972 31755369 -89502161 - MTB LTR MaLR 0 400 1 2 827 28 29 0 0 chr12 31755526 31755561 -89501969 + AT_rich Low_complexity Low_complexity 1 35 0 2 827 330 239 135 40 chr12 31756000 31756148 -89501382 - Charlie1b DNA MER1_type -331 192 31 2 827 1885 128 16 0 chr12 31756765 31757071 -89500459 + ORR1A4 LTR MaLR 19 329 0 2 827 261 0 0 0 chr12 31760719 31760748 -89496782 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 827 204 246 17 34 chr12 31761508 31761567 -89495963 + G-rich Low_complexity Low_complexity 2 59 0 2 827 25 0 0 0 chr12 31762797 31762822 -89494708 + AT_rich Low_complexity Low_complexity 1 25 0 2 827 22 0 0 0 chr12 31763805 31763827 -89493703 + AT_rich Low_complexity Low_complexity 1 22 0 2 827 297 0 0 0 chr12 31766595 31766628 -89490902 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 2 827 1549 191 6 10 chr12 31768826 31769137 -89488393 - RMER15 LTR ERVL 0 575 266 2 827 2094 139 93 3 chr12 31769908 31770284 -89487246 - MTC LTR MaLR -11 410 1 2 827 1524 68 16 0 chr12 31770416 31770608 -89486922 + B2_Mm2 SINE B2 1 195 0 2 827 203 200 15 44 chr12 31770616 31770684 -89486846 + T-rich Low_complexity Low_complexity 4 69 0 2 827 30 0 0 0 chr12 31771139 31771169 -89486361 + AT_rich Low_complexity Low_complexity 1 30 0 2 827 363 78 0 0 chr12 31771228 31771279 -89486251 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 827 296 336 9 9 chr12 31771602 31771707 -89485823 - RSINE1 SINE B4 -51 114 10 2 827 226 170 21 21 chr12 31771915 31771963 -89485567 - ID4_ SINE ID -32 51 4 2 827 320 255 143 0 chr12 31771996 31772094 -89485436 + B3A SINE B2 2 113 -85 2 827 192 339 15 0 chr12 31772094 31772159 -89485371 - MIR SINE MIR -123 85 20 2 827 659 243 37 0 chr12 31772646 31772782 -89484748 - B3A SINE B2 -56 142 2 2 827 380 228 18 74 chr12 31772995 31773116 -89484414 + PB1 SINE Alu 5 120 -7 2 827 297 271 73 41 chr12 31773164 31773287 -89484243 + B1F SINE Alu 21 147 -2 2 827 272 297 14 0 chr12 31773296 31773370 -89484160 + ID4 SINE ID 2 76 -7 2 827 855 53 0 0 chr12 31773392 31773505 -89484025 + (TC)n Simple_repeat Simple_repeat 1 113 0 2 827 203 163 39 39 chr12 31773738 31773789 -89483741 + C-rich Low_complexity Low_complexity 3 53 0 2 827 230 246 57 14 chr12 31773934 31774004 -89483526 - ID4 SINE ID -10 73 1 2 827 279 0 0 0 chr12 31774033 31774064 -89483466 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 827 286 344 65 8 chr12 31774075 31774198 -89483332 - B4A SINE B4 0 292 163 2 827 639 0 0 0 chr12 31774211 31774282 -89483248 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 827 440 202 31 21 chr12 31774282 31774378 -89483152 - B4A SINE B4 -194 98 2 3 827 339 273 38 57 chr12 31774384 31774489 -89483041 - PB1D7 SINE Alu -16 104 2 3 827 489 305 57 6 chr12 31774489 31774664 -89482866 - L1M3 LINE L1 -1079 5061 4878 3 827 492 197 354 14 chr12 31774716 31774860 -89482670 - B3A SINE B2 -4 194 2 3 827 626 254 17 15 chr12 31775854 31775992 -89481538 + RLTR20A LTR ERVK 1 152 -408 3 827 408 223 6 142 chr12 31775992 31776175 -89481355 - RLTR9B LTR ERVK 0 437 280 3 827 935 252 56 36 chr12 31776378 31776790 -89480740 + RLTR20A LTR ERVK 122 541 0 3 827 834 30 0 0 chr12 31776889 31776990 -89480540 + (TA)n Simple_repeat Simple_repeat 2 102 0 3 827 249 139 0 0 chr12 31777078 31777121 -89480409 + (TTAGGG)n Simple_repeat Simple_repeat 6 48 0 3 827 357 256 12 0 chr12 31777192 31777274 -89480256 + MTD LTR MaLR 1 83 -336 3 827 259 143 20 0 chr12 31777392 31777441 -89480089 + MTC LTR MaLR 1 50 -371 3 827 561 270 161 43 chr12 31777464 31777793 -89479737 + RLTR9A LTR ERVK 1 368 0 3 827 222 160 0 0 chr12 31777911 31777961 -89479569 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 827 361 228 6 6 chr12 31777998 31778166 -89479364 + (TG)n Simple_repeat Simple_repeat 1 168 0 3 827 231 191 0 0 chr12 31778204 31778267 -89479263 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 827 425 261 0 4 chr12 31778281 31778551 -89478979 + (TG)n Simple_repeat Simple_repeat 1 269 0 3 827 200 217 0 11 chr12 31778623 31778716 -89478814 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 827 536 209 6 0 chr12 31778731 31778908 -89478622 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 827 435 271 11 0 chr12 31778929 31779284 -89478246 + (TG)n Simple_repeat Simple_repeat 1 359 0 3 827 1400 125 21 7 chr12 31779319 31779608 -89477922 - RLTR11B LTR ERVK -189 339 1 3 827 331 270 0 0 chr12 31779608 31779708 -89477822 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 827 225 0 0 0 chr12 31779904 31779929 -89477601 + (TTAGGG)n Simple_repeat Simple_repeat 3 27 0 3 827 369 58 0 0 chr12 31780959 31781011 -89476519 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 827 1739 16 0 0 chr12 31781075 31781267 -89476263 + B2_Mm1a SINE B2 2 193 0 3 827 21 0 0 0 chr12 31781861 31781882 -89475648 + AT_rich Low_complexity Low_complexity 1 21 0 3 827 217 260 48 72 chr12 31782125 31782208 -89475322 - ID SINE ID -140 84 4 3 827 504 0 0 0 chr12 31782879 31782935 -89474595 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 827 414 0 0 0 chr12 31783669 31783715 -89473815 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 827 3737 128 28 17 chr12 31784064 31784699 -89472831 - RLTR19-int LTR ERVK -4067 2070 1429 3 827 241 345 0 0 chr12 31784699 31784812 -89472718 + (CCA)n Simple_repeat Simple_repeat 2 114 0 3 827 201 196 0 0 chr12 31784825 31784876 -89472654 + (CCA)n Simple_repeat Simple_repeat 1 51 0 3 827 1188 72 16 11 chr12 31785563 31785747 -89471783 - B2_Mm2 SINE B2 -5 190 6 3 827 1665 205 22 36 chr12 31786604 31786968 -89470562 - Lx6 LINE L1 -1508 5952 5594 3 827 189 186 0 41 chr12 31786994 31787067 -89470463 + CT-rich Low_complexity Low_complexity 2 71 0 3 827 768 52 0 0 chr12 31787088 31787185 -89470345 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 827 515 278 8 0 chr12 31787245 31787378 -89470152 - B1_Mur1 SINE Alu -6 143 10 3 827 21 0 0 0 chr12 31787453 31787474 -89470056 + AT_rich Low_complexity Low_complexity 1 21 0 3 827 8609 30 0 0 chr12 31787748 31788735 -89468795 + L1Md_T LINE L1 5595 6581 -1 3 827 479 333 46 10 chr12 31789118 31789315 -89468215 + B4A SINE B4 1 204 -88 3 827 423 0 0 0 chr12 31789327 31789374 -89468156 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 827 542 15 15 0 chr12 31789375 31789442 -89468088 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 827 210 289 152 20 chr12 31789775 31789874 -89467656 - B4 SINE B4 -82 210 99 3 827 2448 103 39 0 chr12 31790067 31790426 -89467104 + MurERV4-int LTR ERVK 3302 3674 -1586 3 827 38475 75 16 13 chr12 31790426 31796751 -89460779 - L1Md_F3 LINE L1 0 6587 236 3 827 1056 127 11 32 chr12 31796757 31796944 -89460586 + MurERV4-int LTR ERVK 3665 3847 -1413 3 827 2868 135 52 19 chr12 31796941 31797425 -89460105 + MurERV4-int LTR ERVK 4758 5257 -3 3 827 2228 175 37 35 chr12 31797436 31797898 -89459632 + RMER4A LTR ERVK 1 463 -3 3 827 508 208 10 0 chr12 31798372 31798473 -89459057 + Lx5 LINE L1 6708 6809 -241 3 827 1432 83 15 15 chr12 31798653 31798848 -89458682 - B2_Mm2 SINE B2 0 195 1 3 827 1191 55 7 0 chr12 31798932 31799078 -89458452 + B1_Mus1 SINE Alu 1 147 -1 3 827 203 79 26 0 chr12 31799083 31799121 -89458409 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 3 827 387 243 9 35 chr12 31800109 31800224 -89457306 - MTC LTR MaLR -11 410 299 3 827 246 95 0 0 chr12 31800224 31800266 -89457264 + (TGG)n Simple_repeat Simple_repeat 2 43 0 3 827 277 41 39 39 chr12 31801479 31801530 -89456000 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 3 827 447 135 59 209 chr12 31801958 31802145 -89455385 + RLTR28B LTR ERVL 24 182 -299 3 827 492 206 147 23 chr12 31803733 31803862 -89453668 + RLTR28B LTR ERVL 337 481 0 3 827 1547 208 60 74 chr12 31804050 31804351 -89453179 + RLTR28B LTR ERVL 17 296 -185 3 827 2308 98 25 0 chr12 31804351 31804669 -89452861 + ORR1A3 LTR MaLR 1 326 0 3 827 1547 208 60 74 chr12 31804669 31804802 -89452728 + RLTR28B LTR ERVL 297 445 -36 3 827 746 276 56 53 chr12 31806314 31806879 -89450651 + L1MB7 LINE L1 5489 6053 -131 3 827 199 300 107 8 chr12 31807070 31807191 -89450339 + MER5A DNA MER1_type 39 171 -18 3 827 327 357 50 27 chr12 31807450 31807709 -89449821 + L1ME1 LINE L1 5915 6179 0 3 827 1855 173 196 35 chr12 31807726 31808181 -89449349 - RLTR12B LTR ERVK 0 528 1 3 827 1045 181 341 11 chr12 31808899 31809169 -89448361 - RLTR15 LTR ERVK 0 359 1 3 827 348 159 0 0 chr12 31809661 31809730 -89447800 - URR1A DNA MER1_type -85 141 73 3 827 238 322 78 0 chr12 31810038 31810153 -89447377 - Charlie10 DNA MER1_type -514 2308 2185 3 827 189 0 0 0 chr12 31811185 31811206 -89446324 + (T)n Simple_repeat Simple_repeat 1 21 0 3 827 387 300 0 10 chr12 31811498 31811599 -89445931 - URR1A DNA MER1_type -126 100 1 3 827 755 288 45 6 chr12 31811903 31812167 -89445363 - B4 SINE B4 0 292 17 3 827 775 238 86 16 chr12 31812560 31812816 -89444714 + L1_Mur3 LINE L1 107 380 -7332 3 827 5379 181 75 14 chr12 31812835 31814078 -89443452 + L1MB2 LINE L1 4825 6164 -7 3 827 382 287 23 58 chr12 31815040 31815214 -89442316 + RMER30 DNA MER1_type 6 173 -29 3 827 249 33 0 0 chr12 31815302 31815332 -89442198 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 827 1679 168 87 65 chr12 31815711 31816081 -89441449 - ORR1C1 LTR MaLR 0 378 1 3 827 1292 266 37 25 chr12 31816328 31816729 -89440801 - MTD LTR MaLR 0 419 14 3 827 2581 209 44 23 chr12 31817547 31818070 -89439460 + Lx6 LINE L1 6912 7445 -15 3 827 980 307 85 32 chr12 31818690 31819182 -89438348 - Lx8 LINE L1 -2 7471 6954 3 827 1044 151 0 0 chr12 31819779 31819958 -89437572 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 3 827 828 98 0 0 chr12 31820002 31820135 -89437395 + (GGAA)n Simple_repeat Simple_repeat 2 134 0 3 827 1268 107 11 0 chr12 31820756 31820933 -89436597 + B2_Mm1t SINE B2 1 179 -14 3 827 276 135 333 15 chr12 31820955 31821075 -89436455 + B2_Mm2 SINE B2 46 195 0 3 827 641 299 11 0 chr12 31822381 31822558 -89434972 - L1MD2 LINE L1 -14 6345 6167 3 827 1992 209 56 21 chr12 31822577 31823106 -89434424 + RLTR11A2 LTR ERVK 7 524 -3 3 827 210 290 40 61 chr12 31823106 31823204 -89434326 - B1F2 SINE Alu -51 98 3 3 827 529 256 72 36 chr12 31823204 31823281 -89434249 - B4A SINE B4 -209 83 1 3 827 792 278 183 87 chr12 31823281 31823496 -89434034 - L1MD2 LINE L1 -195 6164 5940 3 827 2674 97 37 25 chr12 31823496 31823897 -89433633 + Lx4A LINE L1 6652 7057 -1 3 827 792 278 183 87 chr12 31823897 31824202 -89433328 - L1MD2 LINE L1 -420 5939 5591 3 827 258 32 0 0 chr12 31824202 31824233 -89433297 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 827 792 289 170 80 chr12 31824233 31824479 -89433051 - L1MD2 LINE L1 -2452 5590 5309 3 827 339 141 0 0 chr12 31824486 31824550 -89432980 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 3 827 381 316 62 127 chr12 31824662 31824804 -89432726 - B4A SINE B4 0 292 141 3 827 318 50 0 0 chr12 31824804 31824844 -89432686 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 827 381 316 62 127 chr12 31824844 31825009 -89432521 - B4A SINE B4 -152 140 5 3 827 401 256 274 25 chr12 31825019 31825427 -89432103 - L1MD2 LINE L1 -842 5304 4796 3 827 489 265 60 24 chr12 31826026 31826192 -89431338 - RMER15 LTR ERVL -16 559 388 3 827 225 231 0 71 chr12 31826618 31826674 -89430856 - LTR16A LTR ERVL -242 209 158 3 827 698 265 5 37 chr12 31826779 31826967 -89430563 + B3A SINE B2 1 182 -16 3 827 3576 95 14 63 chr12 31826967 31827539 -89429991 + Lx LINE L1 6090 6633 -21 3 827 387 0 0 0 chr12 31829517 31829560 -89427970 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 827 1218 120 34 0 chr12 31829651 31829826 -89427704 + B2_Mm1t SINE B2 2 182 -11 3 827 764 74 0 9 chr12 31831756 31831865 -89425665 + (GAA)n Simple_repeat Simple_repeat 3 110 0 3 827 675 67 0 0 chr12 31831868 31831957 -89425573 + (GGAA)n Simple_repeat Simple_repeat 1 89 0 3 827 513 0 0 0 chr12 31834116 31834173 -89423357 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 827 278 204 0 0 chr12 31834311 31834360 -89423170 - B4 SINE B4 -74 218 170 3 827 2229 157 28 25 chr12 31834365 31834836 -89422694 + RLTR28 LTR ERVL 37 508 -16 3 827 212 320 13 0 chr12 31834846 31834921 -89422609 - B4 SINE B4 -122 170 95 3 827 413 291 73 122 chr12 31836716 31837124 -89420406 - RLTR11A2 LTR ERVK -24 503 116 3 827 1189 122 153 0 chr12 31837409 31837605 -89419925 + URR1A DNA MER1_type 1 226 0 3 827 350 238 0 12 chr12 31837986 31838067 -89419463 - ID4 SINE ID -2 81 2 3 827 552 153 17 40 chr12 31838116 31838293 -89419237 + (TATG)n Simple_repeat Simple_repeat 4 176 0 3 827 494 223 6 0 chr12 31838258 31838415 -89419115 + (TG)n Simple_repeat Simple_repeat 1 158 0 3 827 443 202 8 0 chr12 31838478 31838607 -89418923 + (TG)n Simple_repeat Simple_repeat 1 130 0 3 827 470 265 45 8 chr12 31838620 31838753 -89418777 - ID_B1 SINE B4 -14 210 73 3 827 627 215 71 29 chr12 31838937 31839177 -89418353 + RLTR15 LTR ERVK 1 250 -109 3 827 380 208 0 10 chr12 31840066 31840163 -89417367 + GA-rich Low_complexity Low_complexity 2 97 0 3 827 780 222 0 0 chr12 31840469 31840649 -89416881 + GA-rich Low_complexity Low_complexity 1 180 0 3 827 1046 135 0 6 chr12 31840651 31840830 -89416700 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 827 246 279 12 25 chr12 31841803 31841884 -89415646 - B1F SINE Alu 0 149 70 4 827 535 153 42 13 chr12 31842338 31842576 -89414954 + (CA)n Simple_repeat Simple_repeat 1 244 0 4 827 10329 188 39 41 chr12 31844923 31845089 -89412441 - Lx7 LINE L1 0 7696 7528 4 827 500 30 0 15 chr12 31845089 31845156 -89412374 + (AATAG)n Simple_repeat Simple_repeat 1 66 0 4 827 14515 178 36 42 chr12 31845156 31847468 -89410062 - Lx7 LINE L1 -169 7527 5241 4 827 6393 35 0 20 chr12 31847468 31847562 -89409968 - L1Md_F3 LINE L1 -14 6570 6489 4 827 3475 23 5 0 chr12 31847562 31847956 -89409574 + MTA_Mm LTR MaLR 1 396 0 4 827 9141 36 6 1 chr12 31847956 31849049 -89408481 + MTA_Mm-int LTR MaLR 1 1098 0 4 827 3475 23 5 0 chr12 31849049 31849443 -89408087 + MTA_Mm LTR MaLR 1 396 0 4 827 6393 35 0 20 chr12 31849443 31850111 -89407419 - L1Md_F3 LINE L1 -96 6488 5823 4 103 14515 153 29 42 chr12 31850111 31852367 -89405163 - Lx7 LINE L1 -640 5240 2781 4 828 2330 108 6 0 chr12 31852367 31852692 -89404838 + ORR1A2 LTR MaLR 1 327 0 4 828 11660 208 98 38 chr12 31852692 31852949 -89404581 - Lx7 LINE L1 -3097 2780 2517 4 828 477 313 40 7 chr12 31853865 31854016 -89403514 - RSINE1 SINE B4 -4 161 6 4 828 211 346 0 0 chr12 31854495 31854576 -89402954 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 828 234 174 0 0 chr12 31854581 31854627 -89402903 + (TATG)n Simple_repeat Simple_repeat 2 47 0 4 828 915 267 68 19 chr12 31854782 31855236 -89402294 + L1MB2 LINE L1 5631 6153 -18 4 828 387 282 141 4 chr12 31855294 31855536 -89401994 - L1MB5 LINE L1 -177 6002 5732 4 828 306 294 101 20 chr12 31856333 31856482 -89401048 + RSINE1 SINE B4 5 165 0 4 828 723 205 0 0 chr12 31856510 31856730 -89400800 + (CA)n Simple_repeat Simple_repeat 1 220 0 4 828 872 186 170 50 chr12 31858908 31859225 -89398305 - RMER13A LTR ERVK -399 461 107 4 828 3336 142 79 28 chr12 31859773 31860726 -89396804 + RLTR13D1 LTR ERVK 1 1023 0 4 828 221 293 93 47 chr12 31861292 31861421 -89396109 + L2b LINE L2 3240 3374 -1 4 828 516 285 128 4 chr12 31862702 31862936 -89394594 - MTD LTR MaLR -15 404 134 4 828 314 207 58 23 chr12 31863465 31863638 -89393892 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 4 828 1407 73 10 25 chr12 31863770 31863966 -89393564 + B2_Mm1t SINE B2 1 193 0 4 828 450 0 0 0 chr12 31864030 31864080 -89393450 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 828 636 128 75 0 chr12 31864790 31864923 -89392607 + Lx2 LINE L1 6855 6997 0 4 828 1324 85 0 11 chr12 31865037 31865215 -89392315 - B2_Mm2 SINE B2 -19 176 1 4 828 1158 68 0 20 chr12 31865265 31865415 -89392115 + B1_Mus2 SINE Alu 1 147 0 4 828 241 50 48 32 chr12 31865417 31865479 -89392051 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 4 828 741 290 0 0 chr12 31865656 31865818 -89391712 + RSINE1 SINE B4 3 164 -1 4 828 293 194 75 0 chr12 31866950 31867017 -89390513 - PB1D10 SINE Alu 0 117 46 4 828 1345 85 11 0 chr12 31867727 31867903 -89389627 + B2_Mm1t SINE B2 2 179 -14 4 828 369 135 13 0 chr12 31867989 31868060 -89389470 + B2_Mm2 SINE B2 47 121 -95 4 828 279 0 0 0 chr12 31868068 31868099 -89389431 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4 828 435 19 0 0 chr12 31868277 31868329 -89389201 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 828 577 299 92 15 chr12 31868424 31868686 -89388844 - LTR16A1 LTR ERVL -81 375 94 4 828 289 231 15 15 chr12 31868948 31869014 -89388516 - HERV16-int LTR ERVL -2274 2722 2657 4 828 298 280 87 16 chr12 31872938 31873065 -89384465 + MER58A DNA MER1_type 61 196 -28 4 828 221 149 43 0 chr12 31873309 31873356 -89384174 + GA-rich Low_complexity Low_complexity 2 50 0 4 828 35 54 0 0 chr12 31873372 31873428 -89384102 + AT_rich Low_complexity Low_complexity 1 56 0 4 828 1033 127 12 12 chr12 31873477 31873645 -89383885 + B2_Mm2 SINE B2 2 169 -26 4 828 407 103 349 18 chr12 31873696 31873805 -89383725 + B2_Mm2 SINE B2 47 191 -4 4 828 228 232 48 12 chr12 31873801 31873884 -89383646 + MER53 DNA hAT 108 193 0 4 828 627 276 49 16 chr12 31874103 31874287 -89383243 + B3A SINE B2 3 192 -6 4 828 21 36 0 0 chr12 31874287 31874315 -89383215 + AT_rich Low_complexity Low_complexity 1 28 0 4 828 480 18 0 0 chr12 31874576 31874633 -89382897 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 828 248 324 92 0 chr12 31874837 31874979 -89382551 - LTR16A1 LTR ERVL -28 428 274 4 828 268 388 22 15 chr12 31875282 31875418 -89382112 - MER20B DNA MER1_type -646 137 1 4 828 1111 68 14 7 chr12 31877036 31877183 -89380347 + B1_Mus1 SINE Alu 1 148 0 4 828 289 0 0 47 chr12 31877183 31877226 -89380304 + (CAAAAA)n Simple_repeat Simple_repeat 6 46 0 4 828 280 295 51 51 chr12 31877409 31877527 -89380003 - ORR1E LTR MaLR -162 197 80 4 828 267 307 0 33 chr12 31877809 31877900 -89379630 - MIR SINE MIR -10 252 165 4 828 1381 82 16 0 chr12 31878248 31878432 -89379098 - B2_Mm2 SINE B2 -7 188 2 4 828 1362 73 17 6 chr12 31880759 31880939 -89376591 + B2_Mm1t SINE B2 2 183 -10 4 828 189 0 0 0 chr12 31881174 31881195 -89376335 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 4 828 467 77 0 0 chr12 31881196 31881261 -89376269 - B1_Mur4 SINE Alu -11 139 75 4 828 2169 153 49 27 chr12 31881230 31881712 -89375818 + RLTR19 LTR ERVK 10 499 0 4 828 1020 235 62 111 chr12 31882117 31882648 -89374882 - RLTR16 LTR ERVK 0 505 1 4 828 1066 226 131 13 chr12 31882903 31883190 -89374340 - MTD LTR MaLR -8 411 67 4 828 1619 47 0 0 chr12 31883468 31883659 -89373871 + B2_Mm1a SINE B2 1 191 -2 4 828 900 85 131 0 chr12 31883748 31883878 -89373652 + B1_Mm SINE Alu 1 147 0 4 828 230 0 33 0 chr12 31883882 31883912 -89373618 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 828 408 158 26 0 chr12 31884407 31884483 -89373047 - MTD LTR MaLR -339 80 3 4 828 27 29 0 0 chr12 31885430 31885464 -89372066 + AT_rich Low_complexity Low_complexity 1 34 0 4 828 259 229 174 20 chr12 31886725 31886823 -89370707 + PB1D7 SINE Alu 1 113 -7 4 828 374 342 0 0 chr12 31886940 31887051 -89370479 - PB1D10 SINE Alu -6 111 1 4 828 1703 255 161 39 chr12 31887193 31887300 -89370230 - L1MC3 LINE L1 -56 7729 7621 4 828 2715 54 39 0 chr12 31887300 31887633 -89369897 - ORR1A1 LTR MaLR 0 346 1 4 828 1703 255 161 39 chr12 31887633 31888438 -89369092 - L1MC3 LINE L1 -165 7620 6706 4 828 731 309 109 24 chr12 31888802 31889336 -89368194 + L3 LINE CR1 3430 4008 -481 4 828 964 32 0 0 chr12 31889351 31889476 -89368054 - B1_Mus2 SINE Alu -21 126 2 4 828 607 266 138 97 chr12 31889525 31889866 -89367664 - L1MA5 LINE L1 -29 6271 5917 4 828 1103 115 155 10 chr12 31889987 31890181 -89367349 - URR1A DNA MER1_type 0 226 5 4 828 315 0 0 0 chr12 31890787 31890822 -89366708 + (TAA)n Simple_repeat Simple_repeat 3 37 0 4 828 180 0 0 0 chr12 31891462 31891482 -89366048 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 828 306 367 0 16 chr12 31891895 31892017 -89365513 + MER3 DNA MER1_type 22 141 -68 4 828 3193 154 74 10 chr12 31892017 31892626 -89364904 - L1_Mur2 LINE L1 -444 5433 4786 4 828 469 272 114 10 chr12 31892626 31892819 -89364711 + Lx5 LINE L1 6838 7050 0 4 828 583 295 13 19 chr12 31892891 31893050 -89364480 + RSINE1 SINE B4 3 160 -5 4 828 570 269 6 88 chr12 31893383 31893542 -89363988 + RSINE1 SINE B4 13 158 -7 4 828 1241 41 0 7 chr12 31894962 31895109 -89362421 + B1_Mm SINE Alu 1 146 -1 4 828 460 336 112 22 chr12 31895441 31895709 -89361821 - B4A SINE B4 0 292 1 4 828 22 0 0 0 chr12 31895907 31895929 -89361601 + AT_rich Low_complexity Low_complexity 1 22 0 4 828 3347 16 20 5 chr12 31896322 31896712 -89360818 - MTA_Mm LTR MaLR 0 396 1 4 828 606 28 0 0 chr12 31896729 31896801 -89360729 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 828 218 336 220 7 chr12 31897847 31897988 -89359542 + MIRb SINE MIR 77 247 -21 4 828 1195 48 0 13 chr12 31899219 31899368 -89358162 - B1_Mus1 SINE Alu 0 148 2 4 828 1447 202 60 0 chr12 31899436 31899718 -89357812 - Lx9 LINE L1 -383 7261 6963 4 828 2919 214 73 30 chr12 31899712 31900556 -89356974 - Lx9 LINE L1 -1714 5930 5016 4 828 1274 34 0 0 chr12 31900556 31900703 -89356827 + B1_Mus2 SINE Alu 1 147 0 4 828 6764 149 74 97 chr12 31900752 31901279 -89356251 - ORR1A4-int LTR MaLR 0 1963 1441 4 828 276 30 0 0 chr12 31901279 31901312 -89356218 + (CACTC)n Simple_repeat Simple_repeat 2 34 0 4 828 6764 149 74 97 chr12 31901312 31901604 -89355926 - ORR1A4-int LTR MaLR -523 1440 1169 4 828 1055 101 0 0 chr12 31901604 31901742 -89355788 - B1_Mus1 SINE Alu -9 139 2 4 828 6764 149 74 97 chr12 31901742 31901968 -89355562 - ORR1A4-int LTR MaLR -795 1168 958 4 828 1677 16 5 0 chr12 31901968 31902159 -89355371 + B2_Mm1a SINE B2 2 193 0 4 828 6764 149 74 97 chr12 31902159 31902782 -89354748 - ORR1A4-int LTR MaLR -1006 957 333 4 828 911 143 39 91 chr12 31902773 31903003 -89354527 - ORR1A4 LTR MaLR -110 219 2 4 828 1323 234 12 18 chr12 31903015 31903355 -89354175 + L1_Rod LINE L1 4556 4893 -954 4 828 301 220 0 17 chr12 31903516 31903576 -89353954 + ID4 SINE ID 23 81 -2 4 828 246 95 0 0 chr12 31904038 31904080 -89353450 + (T)n Simple_repeat Simple_repeat 1 42 0 4 828 1235 41 0 0 chr12 31904080 31904226 -89353304 - B1_Mus2 SINE Alu 0 147 2 4 828 441 246 110 8 chr12 31905090 31905105 -89352425 - B3A SINE B2 0 198 184 4 828 342 80 0 0 chr12 31905105 31905155 -89352375 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 828 497 219 67 9 chr12 31905155 31905279 -89352251 - B3 SINE B2 -15 183 39 4 828 201 196 0 19 chr12 31905279 31905331 -89352199 + A-rich Low_complexity Low_complexity 3 53 0 4 828 931 279 25 32 chr12 31905906 31906191 -89351339 - B4 SINE B4 -2 290 8 4 828 180 176 0 0 chr12 31906206 31906240 -89351290 + (TGG)n Simple_repeat Simple_repeat 1 34 0 4 828 213 197 145 16 chr12 31906296 31906358 -89351172 - L2a LINE L2 -24 3402 3333 4 828 189 0 0 0 chr12 31906372 31906393 -89351137 + (CGGGGG)n Simple_repeat Simple_repeat 2 22 0 4 828 560 165 11 17 chr12 31906759 31906938 -89350592 + CT-rich Low_complexity Low_complexity 2 179 0 4 828 498 122 39 50 chr12 31906903 31907084 -89350446 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 5 828 532 161 17 22 chr12 31907085 31907263 -89350267 + (TCTG)n Simple_repeat Simple_repeat 2 178 0 5 828 435 207 0 0 chr12 31908066 31908148 -89349382 - B4A SINE B4 -210 82 1 5 828 423 279 129 76 chr12 31908637 31908677 -89348853 + B4A SINE B4 47 91 -201 5 828 360 64 0 0 chr12 31908677 31908724 -89348806 + (TAA)n Simple_repeat Simple_repeat 1 47 0 5 828 423 279 129 76 chr12 31908724 31908908 -89348622 + B4A SINE B4 92 282 -10 5 828 352 211 0 26 chr12 31909956 31910034 -89347496 + PB1D10 SINE Alu 42 117 0 5 828 421 214 174 0 chr12 31910050 31910148 -89347382 + PB1D9 SINE Alu 5 119 -1 5 828 1363 172 56 145 chr12 31911674 31912088 -89345442 + ORR1C2 LTR MaLR 3 379 -5 5 828 391 228 202 8 chr12 31912806 31912930 -89344600 - B1F2 SINE Alu 0 149 2 5 828 396 0 0 0 chr12 31912969 31913013 -89344517 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 828 294 98 0 0 chr12 31913384 31913435 -89344095 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5 828 285 89 0 0 chr12 31913488 31913533 -89343997 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 828 908 92 0 41 chr12 31914644 31914791 -89342739 - B1_Mus1 SINE Alu 0 148 8 5 828 247 267 33 0 chr12 31914836 31914896 -89342634 - MIRc SINE MIR -135 133 72 5 828 2152 141 16 18 chr12 31915789 31916172 -89341358 + MTC LTR MaLR 40 421 0 5 828 272 346 51 14 chr12 31916172 31916310 -89341220 + L1MEd LINE L1 487 629 -5490 5 828 180 214 0 0 chr12 31916548 31916604 -89340926 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 828 600 285 143 9 chr12 31916688 31916904 -89340626 - B4A SINE B4 -4 288 44 5 828 651 165 95 29 chr12 31917009 31917146 -89340384 + B1_Mur3 SINE Alu 2 147 -2 5 828 229 207 49 0 chr12 31917361 31917468 -89340062 + (GTTTG)n Simple_repeat Simple_repeat 1 112 0 5 828 243 79 0 0 chr12 31919107 31919145 -89338385 + (A)n Simple_repeat Simple_repeat 1 38 0 5 828 456 255 186 0 chr12 31920023 31920184 -89337346 + ID_B1 SINE B4 2 192 -32 5 828 216 318 67 37 chr12 31920494 31920628 -89336902 + B4A SINE B4 2 139 -153 5 828 180 0 0 0 chr12 31920739 31920759 -89336771 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 828 285 29 0 0 chr12 31921193 31921227 -89336303 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 828 430 141 42 0 chr12 31922195 31922266 -89335264 - RSINE1 SINE B4 -15 150 77 5 828 181 369 53 29 chr12 31922703 31922946 -89334584 - L3 LINE CR1 -127 4362 4114 5 828 1109 52 32 7 chr12 31923389 31923543 -89333987 + B2_Mm1t SINE B2 1 158 -35 5 828 333 0 0 0 chr12 31923543 31923580 -89333950 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 828 423 0 0 0 chr12 31923658 31923705 -89333825 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 828 1027 93 62 0 chr12 31923705 31923856 -89333674 - B2_Mm2 SINE B2 -33 162 2 5 828 2838 152 55 28 chr12 31923873 31924453 -89333077 - RMER20B LTR ERVK -22 605 10 5 828 618 51 0 0 chr12 31925434 31925512 -89332018 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 828 226 83 83 0 chr12 31927387 31927435 -89330095 + CT-rich Low_complexity Low_complexity 3 54 0 5 828 1472 158 14 53 chr12 31927439 31927793 -89329737 - MTC LTR MaLR 0 421 20 5 828 465 246 171 53 chr12 31927821 31928066 -89329464 - B4 SINE B4 -14 278 5 5 828 279 71 0 0 chr12 31928089 31928131 -89329399 + (T)n Simple_repeat Simple_repeat 1 42 0 5 828 894 227 36 23 chr12 31928139 31928360 -89329170 - ID_B1 SINE B4 0 224 1 5 828 211 318 0 0 chr12 31928683 31928749 -89328781 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 828 423 245 9 75 chr12 31929324 31929430 -89328100 + B1_Mur3 SINE Alu 5 103 -46 5 828 249 227 12 62 chr12 31929368 31929448 -89328082 + MT2B LTR ERVL 198 273 -328 5 828 441 0 0 0 chr12 31929450 31929499 -89328031 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 828 547 228 35 0 chr12 31929642 31929787 -89327743 - MTD LTR MaLR 0 419 270 5 828 290 322 78 108 chr12 31929788 31930132 -89327398 + ORR1E LTR MaLR 26 359 0 5 828 443 33 16 0 chr12 31930769 31930830 -89326700 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 828 1147 38 6 31 chr12 31932140 31932303 -89325227 + B2_Mm1a SINE B2 2 160 -33 5 828 342 0 0 0 chr12 31932303 31932341 -89325189 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 828 617 243 91 9 chr12 31932399 31932619 -89324911 - RCHARR1 DNA MER1_type -6 968 731 5 828 324 306 29 36 chr12 31932621 31932760 -89324770 + B4A SINE B4 1 138 -154 5 828 411 162 0 0 chr12 31932832 31932912 -89324618 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 5 828 230 206 86 99 chr12 31932934 31933015 -89324515 + ID4_ SINE ID 1 80 -3 5 828 216 0 0 0 chr12 31934244 31934268 -89323262 + (A)n Simple_repeat Simple_repeat 1 24 0 5 828 819 233 23 0 chr12 31934435 31934607 -89322923 + B3 SINE B2 2 177 -39 5 828 1355 136 117 38 chr12 31934607 31934783 -89322747 + ORR1B2 LTR MaLR 1 169 -198 5 828 856 18 18 0 chr12 31934783 31934893 -89322637 + (TC)n Simple_repeat Simple_repeat 1 112 0 5 828 1355 136 117 38 chr12 31934893 31935007 -89322523 + ORR1B2 LTR MaLR 170 314 -53 5 828 351 0 0 0 chr12 31935237 31935276 -89322254 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 828 215 203 17 0 chr12 31935603 31935662 -89321868 + CT-rich Low_complexity Low_complexity 1 60 0 5 828 727 244 18 6 chr12 31935679 31935844 -89321686 - B3A SINE B2 -22 176 10 5 828 33 0 0 0 chr12 31935996 31936029 -89321501 + AT_rich Low_complexity Low_complexity 1 33 0 5 828 186 167 0 0 chr12 31936170 31936206 -89321324 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 828 3997 56 30 0 chr12 31936245 31936746 -89320784 + L1_Mus1 LINE L1 6052 6567 0 5 828 32 67 0 0 chr12 31936782 31936842 -89320688 + AT_rich Low_complexity Low_complexity 1 60 0 5 828 971 149 0 0 chr12 31936856 31936997 -89320533 + B1_Mur3 SINE Alu 2 142 -7 5 828 1804 214 66 22 chr12 31937494 31937991 -89319539 - RLTR11A2 LTR ERVK 0 527 9 5 828 294 271 43 0 chr12 31938037 31938107 -89319423 - ID SINE ID -151 73 1 5 828 424 212 289 6 chr12 31938820 31938986 -89318544 - B3 SINE B2 -3 213 1 5 828 222 37 0 0 chr12 31941617 31941644 -89315886 + (T)n Simple_repeat Simple_repeat 1 27 0 5 828 358 342 55 42 chr12 31942450 31942651 -89314879 + B4A SINE B4 2 206 -86 5 828 585 42 0 0 chr12 31942651 31942723 -89314807 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 828 358 342 55 42 chr12 31942723 31942759 -89314771 + B4A SINE B4 207 242 -50 5 828 3978 82 34 7 chr12 31942882 31943444 -89314086 - Lx3_Mus LINE L1 0 7009 6433 5 828 246 32 0 0 chr12 31943444 31943475 -89314055 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 828 1307 85 16 31 chr12 31943937 31944131 -89313399 - B2_Mm2 SINE B2 -4 191 1 5 828 198 0 0 0 chr12 31944542 31944564 -89312966 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 828 226 238 22 101 chr12 31945042 31945131 -89312399 + MER110 LTR ERV1 44 125 -366 5 828 1057 168 61 0 chr12 31945060 31945256 -89312274 - ORR1D2 LTR MaLR -8 362 155 5 828 890 241 34 71 chr12 31945289 31945642 -89311888 - RLTR15 LTR ERVK -19 340 1 5 828 529 246 35 0 chr12 31945663 31945777 -89311753 - ORR1D2 LTR MaLR -248 122 5 5 828 393 250 0 104 chr12 31945995 31946016 -89311514 + MT2B LTR ERVL 145 151 -450 5 828 931 57 0 0 chr12 31946016 31946138 -89311392 + B1_Mus1 SINE Alu 1 122 -26 5 828 276 53 0 0 chr12 31947844 31947882 -89309648 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 828 198 0 0 0 chr12 31947883 31947905 -89309625 + (CACTG)n Simple_repeat Simple_repeat 1 22 0 5 828 470 208 47 9 chr12 31948157 31948264 -89309266 + B4A SINE B4 180 290 -2 5 828 1446 79 16 0 chr12 31948464 31948653 -89308877 + B2_Mm2 SINE B2 2 193 -2 5 828 234 91 0 0 chr12 31948667 31948700 -89308830 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 5 828 216 0 0 0 chr12 31955057 31955081 -89302449 + (T)n Simple_repeat Simple_repeat 1 24 0 5 828 1272 126 11 0 chr12 31955091 31955281 -89302249 - B2_Mm1t SINE B2 -1 192 1 5 828 2906 145 57 79 chr12 31958787 31959370 -89298160 - RMER15 LTR ERVL -5 570 1 5 828 263 327 131 0 chr12 31959690 31959726 -89297804 + ID_B1 SINE B4 81 200 -23 5 828 398 214 0 0 chr12 31959726 31959796 -89297734 + B1_Mur1 SINE Alu 53 122 -27 5 828 354 61 0 0 chr12 31959807 31959856 -89297674 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5 828 933 256 102 53 chr12 31961896 31962272 -89295258 - L1MB4 LINE L1 -7 6173 5761 5 828 2643 162 34 50 chr12 31962272 31962832 -89294698 - Lx4B LINE L1 0 7058 6508 5 828 933 256 102 53 chr12 31962832 31962904 -89294626 - L1MB4 LINE L1 -420 5760 5703 5 828 1096 193 30 5 chr12 31964038 31964241 -89293289 - B3 SINE B2 -5 211 4 5 828 274 212 0 91 chr12 31964276 31964364 -89293166 + MER53 DNA hAT 5 84 -109 5 828 283 211 114 38 chr12 31964299 31964378 -89293152 - MER53 DNA hAT -12 181 97 5 828 183 208 20 20 chr12 31964614 31964663 -89292867 - L3 LINE CR1 -3649 840 792 5 828 279 113 0 0 chr12 31967670 31967723 -89289807 + (A)n Simple_repeat Simple_repeat 1 53 0 5 828 1463 188 137 30 chr12 31968282 31968653 -89288877 + MTD LTR MaLR 9 380 -39 5 828 336 259 97 44 chr12 31969733 31969846 -89287684 - RSINE1 SINE B4 0 165 47 5 828 23 68 0 0 chr12 31969880 31969924 -89287606 + AT_rich Low_complexity Low_complexity 1 44 0 5 828 231 281 21 63 chr12 31969973 31970068 -89287462 + RMER12 LTR ERVK 746 836 -486 5 828 886 172 12 12 chr12 31970068 31970233 -89287297 - Lx9 LINE L1 -165 7479 7315 6 828 232 208 37 19 chr12 31970896 31970950 -89286580 + ORR1E LTR MaLR 35 89 -285 6 828 284 297 75 90 chr12 31971051 31971306 -89286224 + ORR1E LTR MaLR 101 351 -8 6 828 225 250 18 0 chr12 31971644 31971700 -89285830 - ORR1D2 LTR MaLR -227 143 87 6 828 690 206 13 33 chr12 31971877 31972028 -89285502 - B1_Mur4 SINE Alu -1 149 2 6 828 279 0 0 0 chr12 31972156 31972187 -89285343 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 828 225 139 0 0 chr12 31973015 31973058 -89284472 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 828 400 266 54 27 chr12 31973228 31973340 -89284190 - PB1D10 SINE Alu -1 116 2 6 828 293 314 113 38 chr12 31973601 31973839 -89283691 + L1M5 LINE L1 5589 5844 -280 6 828 704 156 242 0 chr12 31974469 31974636 -89282894 + B3A SINE B2 9 212 -4 6 828 184 111 53 53 chr12 31974920 31974977 -89282553 + T-rich Low_complexity Low_complexity 2 58 0 6 828 210 71 0 0 chr12 31975266 31975294 -89282236 + (T)n Simple_repeat Simple_repeat 1 28 0 6 828 551 302 49 53 chr12 31975306 31975551 -89281979 - B4A SINE B4 0 292 49 6 828 344 333 118 0 chr12 31975641 31975776 -89281754 - RSINE1 SINE B4 -2 163 13 6 828 339 233 125 94 chr12 31977144 31977272 -89280258 - RSINE1 SINE B4 -30 135 4 6 828 228 301 152 14 chr12 31977518 31977663 -89279867 - MamRep434 DNA TcMar -37 389 225 6 828 228 35 0 0 chr12 31977944 31977973 -89279557 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 828 745 284 260 23 chr12 31978431 31978904 -89278626 - MLT1E2 LTR MaLR 0 627 43 6 828 315 278 43 17 chr12 31980710 31980827 -89276703 + PB1D7 SINE Alu 1 120 0 6 828 233 262 0 12 chr12 31980882 31980963 -89276567 + GA-rich Low_complexity Low_complexity 1 80 0 6 828 24 32 0 0 chr12 31980980 31981011 -89276519 + AT_rich Low_complexity Low_complexity 1 31 0 6 829 869 214 65 20 chr12 31981965 31982165 -89275365 + B3 SINE B2 2 210 -6 6 829 458 202 39 48 chr12 31984316 31984420 -89273110 - PB1D10 SINE Alu 0 117 15 6 829 546 205 225 11 chr12 31985366 31985553 -89271977 + RMER21B LTR ERV1 285 511 -331 6 829 531 217 64 40 chr12 31986251 31986376 -89271154 + B1_Mur2 SINE Alu 22 149 0 6 829 637 225 50 61 chr12 31986423 31986603 -89270927 + B3A SINE B2 21 198 0 6 829 1896 149 32 22 chr12 31986625 31987031 -89270499 - RMER17C LTR ERVK 0 410 1 6 829 180 0 0 0 chr12 31987616 31987636 -89269894 + (G)n Simple_repeat Simple_repeat 1 20 0 6 829 384 256 0 0 chr12 31988050 31988132 -89269398 + PB1D10 SINE Alu 36 117 0 6 829 216 343 57 12 chr12 31988254 31988375 -89269155 - L2a LINE L2 -2 3424 3253 6 829 208 308 30 15 chr12 31988910 31988976 -89268554 - L4 LINE RTE -631 1398 1332 6 829 185 296 35 47 chr12 31989247 31989332 -89268198 + MER5A DNA MER1_type 33 116 -73 6 829 398 127 14 0 chr12 31990069 31990140 -89267390 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 829 198 0 0 0 chr12 31990883 31990905 -89266625 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 6 829 1196 36 0 0 chr12 31992342 31992480 -89265050 + B1_Mm SINE Alu 2 139 -8 6 829 243 0 0 0 chr12 31993184 31993211 -89264319 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 829 873 55 0 0 chr12 31993211 31993320 -89264210 - B1_Mus1 SINE Alu -10 138 30 6 829 390 274 19 9 chr12 31993678 31993785 -89263745 + PB1D10 SINE Alu 10 117 0 6 829 209 122 0 47 chr12 31996043 31996086 -89261444 + GA-rich Low_complexity Low_complexity 4 44 0 6 829 407 312 27 0 chr12 31996184 31996296 -89261234 - PB1D10 SINE Alu -1 116 2 6 829 594 262 83 0 chr12 31996417 31996585 -89260945 - RMER10B LTR ERVL -10 388 207 6 829 275 319 20 41 chr12 31997079 31997098 -89260432 - RSINE1 SINE B4 -22 143 128 6 829 1951 174 112 10 chr12 31997098 31997499 -89260031 - RMER10A LTR ERVL 0 442 1 6 829 275 319 20 41 chr12 31997499 31997577 -89259953 - RSINE1 SINE B4 -38 127 48 6 829 414 278 31 0 chr12 31997820 31997917 -89259613 + ID_B1 SINE B4 116 215 -9 6 829 187 356 37 75 chr12 31997997 31998158 -89259372 - MIRb SINE MIR -47 221 67 6 829 210 71 0 0 chr12 31998708 31998736 -89258794 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 829 720 288 166 4 chr12 31999685 31999926 -89257604 - B4 SINE B4 -5 287 8 6 829 340 311 40 35 chr12 32002781 32002954 -89254576 + MIRb SINE MIR 78 251 -17 1 829 445 239 61 61 chr12 32003914 32004061 -89253469 - RSINE1 SINE B4 -16 149 3 2 829 602 178 8 17 chr12 32004098 32004218 -89253312 - PB1D9 SINE Alu 0 120 2 3 829 246 74 36 18 chr12 32006318 32006373 -89251157 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 4 829 1193 62 0 20 chr12 32009907 32010056 -89247474 + B1_Mus1 SINE Alu 3 148 0 5 829 326 216 54 0 chr12 32010661 32010735 -89246795 - B1_Mur4 SINE Alu 0 150 73 6 829 21 0 0 0 chr12 32011728 32011749 -89245781 + AT_rich Low_complexity Low_complexity 1 21 0 7 829 733 137 111 0 chr12 32012243 32012396 -89245134 - URR1A DNA MER1_type 0 226 57 8 829 590 98 0 0 chr12 32013250 32013342 -89244188 + B1_Mus1 SINE Alu 2 93 -55 9 829 228 154 45 15 chr12 32013365 32013431 -89244099 + GA-rich Low_complexity Low_complexity 1 68 0 1 829 1234 35 0 0 chr12 32015613 32015755 -89241775 + B1_Mm SINE Alu 1 142 -5 1 829 21 0 0 0 chr12 32017340 32017361 -89240169 + AT_rich Low_complexity Low_complexity 1 21 0 1 829 917 178 151 0 chr12 32017778 32017963 -89239567 + B3 SINE B2 1 213 -3 1 829 21 0 0 0 chr12 32019117 32019138 -89238392 + AT_rich Low_complexity Low_complexity 1 21 0 1 829 298 277 41 41 chr12 32019145 32019243 -89238287 + PB1 SINE Alu 30 127 0 1 829 348 244 0 25 chr12 32019826 32019906 -89237624 + ID4 SINE ID 3 80 -3 1 829 1219 289 137 20 chr12 32021054 32021602 -89235928 + Lx8 LINE L1 6827 7438 -35 1 829 429 180 5 82 chr12 32021717 32021911 -89235619 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 829 549 144 96 0 chr12 32022033 32022137 -89235393 + B1F2 SINE Alu 36 149 0 1 829 1538 68 5 0 chr12 32022212 32022404 -89235126 + B2_Mm1a SINE B2 1 193 0 2 829 191 36 36 0 chr12 32023017 32023045 -89234485 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 829 968 227 10 10 chr12 32023080 32023285 -89234245 - B3 SINE B2 -5 211 7 2 829 5730 79 0 61 chr12 32023447 32023666 -89233864 + L1_Mus2 LINE L1 5098 5301 -582 2 829 1233 48 0 0 chr12 32023666 32023812 -89233718 + B1_Mm SINE Alu 2 147 0 2 829 8000 59 4 16 chr12 32023812 32025108 -89232422 + L1_Mus2 LINE L1 5302 6566 0 2 829 296 187 17 179 chr12 32025418 32025535 -89231995 - PB1D10 SINE Alu -12 105 8 2 829 216 0 0 0 chr12 32027376 32027400 -89230130 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 829 1270 138 20 5 chr12 32028443 32028647 -89228883 + RMER1B Other Other 693 899 -167 2 829 254 163 82 0 chr12 32028646 32028695 -89228835 + RMER1B Other Other 847 899 -167 2 829 947 170 88 0 chr12 32028694 32028888 -89228642 + RMER1B Other Other 847 1057 -9 2 829 1526 53 5 0 chr12 32028917 32029106 -89228424 + B2_Mm1a SINE B2 2 191 -2 3 829 936 222 43 29 chr12 32029358 32029567 -89227963 + B3 SINE B2 2 213 -3 3 829 31 0 0 0 chr12 32029568 32029599 -89227931 + AT_rich Low_complexity Low_complexity 1 31 0 3 829 351 0 0 0 chr12 32030276 32030315 -89227215 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 829 1455 53 10 41 chr12 32030609 32030805 -89226725 - B2_Mm2 SINE B2 -5 190 1 3 829 217 333 81 0 chr12 32030874 32030973 -89226557 + MIR SINE MIR 145 251 -11 3 829 1080 236 122 69 chr12 32031636 32031996 -89225534 - MTE2b LTR MaLR 0 379 1 3 829 962 195 415 3 chr12 32032977 32033271 -89224259 - MTD LTR MaLR -2 417 3 3 829 1233 54 0 0 chr12 32033501 32033648 -89223882 - B1_Mus1 SINE Alu 0 148 2 3 829 196 269 108 27 chr12 32033988 32034099 -89223431 + L2 LINE L2 2833 2952 -467 3 829 470 311 20 0 chr12 32034604 32034755 -89222775 + RSINE1 SINE B4 4 157 -8 4 829 22 35 0 0 chr12 32034954 32034983 -89222547 + AT_rich Low_complexity Low_complexity 1 29 0 4 829 924 59 86 36 chr12 32036965 32037105 -89220425 + B1_Mus2 SINE Alu 1 147 0 4 829 982 220 37 18 chr12 32037375 32037593 -89219937 - ID_B1 SINE B4 -1 223 2 4 829 287 294 92 8 chr12 32037595 32037715 -89219815 + MLT1J LTR MaLR 35 164 -348 4 829 505 238 154 21 chr12 32037727 32037967 -89219563 - RLTR10A LTR ERVK 0 411 140 4 829 1892 204 16 28 chr12 32038008 32038495 -89219035 - IAP-d-int LTR ERVK -202 7042 6522 4 829 2124 315 50 47 chr12 32038600 32040444 -89217086 - IAP-d-int LTR ERVK -1468 5074 3268 4 829 366 261 47 47 chr12 32040496 32040645 -89216885 - IAP-d-int LTR ERVK -4153 2389 2241 4 829 363 171 27 54 chr12 32040972 32041046 -89216484 - RLTR10-int LTR ERVK -1598 389 318 4 829 469 268 154 21 chr12 32041062 32041302 -89216228 - RLTR10A LTR ERVK 0 411 140 4 829 370 328 27 37 chr12 32041406 32041590 -89215940 + MLT1H1 LTR MaLR 1 233 -316 4 829 833 226 11 11 chr12 32041595 32042043 -89215487 + CT-rich Low_complexity Low_complexity 1 448 0 4 829 347 221 41 31 chr12 32042075 32042173 -89215357 + MLT1G1 LTR MaLR 472 570 -9 4 829 1303 139 96 5 chr12 32042813 32043022 -89214508 + Lx5 LINE L1 6672 6899 -151 5 829 3136 8 43 0 chr12 32043022 32043374 -89214156 - IAPLTR1_Mm LTR ERVK 0 367 1 5 829 57039 19 18 1 chr12 32043374 32049738 -89207792 - IAPEz-int LTR ERVK 0 6481 8 5 829 3136 8 43 0 chr12 32049738 32050090 -89207440 - IAPLTR1_Mm LTR ERVK 0 367 1 5 829 338 274 35 0 chr12 32050208 32050321 -89207209 + Lx5 LINE L1 6933 7049 -1 5 829 530 274 134 5 chr12 32050323 32050510 -89207020 + B4A SINE B4 82 292 0 5 829 460 266 42 7 chr12 32050864 32051008 -89206522 - B1F1 SINE Alu 0 149 1 5 829 369 0 0 0 chr12 32052124 32052165 -89205365 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 829 444 153 67 22 chr12 32052165 32052299 -89205231 - RMER17C LTR ERVK -139 271 132 5 829 986 61 0 0 chr12 32052297 32052428 -89205102 + B1_Mus1 SINE Alu 9 139 -9 5 829 216 0 0 0 chr12 32052428 32052452 -89205078 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 829 319 103 17 0 chr12 32052452 32052510 -89205020 - RMER17B LTR ERVK -620 338 280 5 829 246 216 20 0 chr12 32053123 32053174 -89204356 - B4A SINE B4 -193 99 48 6 829 596 293 89 47 chr12 32053323 32053581 -89203949 + B4A SINE B4 4 272 -20 6 829 254 29 29 0 chr12 32053601 32053636 -89203894 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 829 227 310 149 20 chr12 32053963 32054111 -89203419 - MIRb SINE MIR -9 259 93 6 829 515 250 0 0 chr12 32054229 32054337 -89203193 - B4A SINE B4 -3 289 182 6 829 3396 43 0 130 chr12 32055031 32055532 -89201998 - RLTR10C LTR ERVK 0 436 1 6 829 633 238 146 22 chr12 32055641 32055826 -89201704 - B3 SINE B2 -5 211 4 6 829 210 179 0 0 chr12 32055876 32055932 -89201598 + G-rich Low_complexity Low_complexity 1 56 0 6 829 237 329 33 42 chr12 32055951 32056164 -89201366 + L2a LINE L2 3178 3388 -38 6 829 491 226 16 16 chr12 32056217 32056343 -89201187 - RSINE1 SINE B4 -34 131 6 6 829 405 0 0 0 chr12 32056663 32056708 -89200822 + (TAA)n Simple_repeat Simple_repeat 2 46 0 7 829 188 135 27 0 chr12 32056710 32056747 -89200783 + (ATG)n Simple_repeat Simple_repeat 1 38 0 7 829 279 0 0 0 chr12 32057238 32057269 -89200261 + (T)n Simple_repeat Simple_repeat 1 31 0 7 829 770 241 68 5 chr12 32057719 32057911 -89199619 + B3 SINE B2 1 204 -12 7 829 450 277 8 8 chr12 32058170 32058290 -89199240 - B4A SINE B4 -172 120 1 7 829 25 0 0 0 chr12 32058377 32058402 -89199128 + AT_rich Low_complexity Low_complexity 1 25 0 7 829 546 222 274 12 chr12 32058415 32058579 -89198951 - B3 SINE B2 -8 208 2 7 829 565 266 29 7 chr12 32058635 32058775 -89198755 - B1F2 SINE Alu -1 148 6 7 829 255 341 12 0 chr12 32058699 32058784 -89198746 - B4A SINE B4 -125 167 82 7 829 243 0 0 0 chr12 32058784 32058811 -89198719 + (T)n Simple_repeat Simple_repeat 1 27 0 7 829 210 71 0 0 chr12 32059950 32059978 -89197552 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 829 239 149 76 81 chr12 32059978 32060060 -89197470 - PB1D10 SINE Alu -21 96 5 8 829 2142 109 59 64 chr12 32060204 32060626 -89196904 + RLTR23 LTR ERV1 11 430 0 8 829 381 131 0 0 chr12 32060693 32060754 -89196776 + (GGA)n Simple_repeat Simple_repeat 1 61 0 8 829 226 361 31 77 chr12 32060821 32061043 -89196487 + MLT1K LTR MaLR 384 595 0 8 829 624 278 135 15 chr12 32061271 32061530 -89196000 + B4A SINE B4 3 292 0 8 829 207 133 0 0 chr12 32062724 32062769 -89194761 + (T)n Simple_repeat Simple_repeat 1 45 0 8 829 1883 175 48 15 chr12 32062771 32063165 -89194365 + MTD LTR MaLR 13 419 0 8 829 1183 63 124 23 chr12 32063351 32063528 -89194002 - B2_Mm2 SINE B2 0 195 1 8 829 40 91 0 0 chr12 32064193 32064303 -89193227 + AT_rich Low_complexity Low_complexity 1 110 0 8 829 258 136 0 0 chr12 32064303 32064347 -89193183 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 829 3789 185 59 16 chr12 32064514 32065331 -89192199 + RLTR25B LTR ERVK 1 852 -176 9 829 228 118 18 105 chr12 32065692 32065749 -89191781 + RLTR25A LTR ERVK 753 804 -224 9 829 369 0 0 0 chr12 32065753 32065794 -89191736 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 829 279 0 0 0 chr12 32065794 32065824 -89191706 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 829 259 41 0 197 chr12 32065831 32065892 -89191638 + RLTR25A LTR ERVK 1055 1103 0 9 829 549 236 0 0 chr12 32066120 32066268 -89191262 + (CA)n Simple_repeat Simple_repeat 1 148 0 9 829 543 241 15 22 chr12 32066428 32066564 -89190966 - B1F2 SINE Alu 0 149 15 9 829 215 264 97 0 chr12 32066686 32066758 -89190772 + L2a LINE L2 3342 3420 -6 9 829 402 306 12 75 chr12 32066759 32066932 -89190598 + RSINE1 SINE B4 2 163 -2 9 829 34 0 0 0 chr12 32067762 32067796 -89189734 + AT_rich Low_complexity Low_complexity 1 34 0 9 829 3275 154 157 74 chr12 32067849 32068671 -89188859 + RMER19B LTR ERVK 1 890 -12 1 829 1129 77 0 0 chr12 32068765 32068908 -89188622 + B1_Mm SINE Alu 2 144 -3 1 829 847 256 77 101 chr12 32069068 32069446 -89188084 - RMER2 LTR ERV1 0 567 199 1 829 378 0 0 0 chr12 32070259 32070301 -89187229 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 829 341 218 161 0 chr12 32070423 32070510 -89187020 - PB1D10 SINE Alu -8 109 9 1 829 22 0 0 0 chr12 32070542 32070564 -89186966 + AT_rich Low_complexity Low_complexity 1 22 0 1 829 217 48 47 23 chr12 32070567 32070610 -89186920 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 1 829 186 244 0 0 chr12 32071158 32071203 -89186327 - MIRc SINE MIR -27 241 197 1 829 1640 205 167 40 chr12 32072076 32072578 -89184952 - RMER4B LTR ERVK -3 582 17 1 829 441 129 0 0 chr12 32072583 32072653 -89184877 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 829 264 274 0 0 chr12 32072851 32072913 -89184617 - B1F1 SINE Alu -52 97 36 1 829 181 305 171 0 chr12 32072947 32073029 -89184501 + L4 LINE RTE 1262 1357 -672 1 829 473 356 34 17 chr12 32073606 32073840 -89183690 - MIR SINE MIR -21 241 4 1 829 244 356 117 36 chr12 32073949 32073963 -89183567 + B1F1 SINE Alu 1 144 -1 1 829 388 299 84 17 chr12 32073963 32074082 -89183448 + ID_B1 SINE B4 96 222 -2 1 829 201 176 14 68 chr12 32074088 32074161 -89183369 + A-rich Low_complexity Low_complexity 3 71 0 1 829 270 213 82 0 chr12 32074949 32075010 -89182520 + ID4_ SINE ID 2 67 -16 1 829 231 243 110 62 chr12 32075051 32075196 -89182334 - L1ME1 LINE L1 -133 6046 5895 1 829 197 334 61 69 chr12 32075294 32075726 -89181804 - L2a LINE L2 -41 3385 2976 1 829 849 216 89 5 chr12 32075943 32076134 -89181396 + ID_B1 SINE B4 5 211 -13 1 829 468 51 0 0 chr12 32076136 32076195 -89181335 + (GGA)n Simple_repeat Simple_repeat 3 61 0 1 829 324 195 208 0 chr12 32076226 32076303 -89181227 + B1F SINE Alu 6 98 -51 1 829 213 269 19 0 chr12 32076366 32076418 -89181112 - L2a LINE L2 -718 2701 2649 1 829 506 296 162 0 chr12 32077489 32077668 -89179862 - ID_B1 SINE B4 -4 220 13 1 829 287 312 10 10 chr12 32078243 32078340 -89179190 + GA-rich Low_complexity Low_complexity 2 98 0 1 829 211 208 19 0 chr12 32078339 32078392 -89179138 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 829 793 169 19 0 chr12 32078402 32078721 -89178809 + (TATG)n Simple_repeat Simple_repeat 1 325 0 1 829 234 234 0 0 chr12 32078747 32078794 -89178736 - BC1_Mm scRNA scRNA -91 61 15 1 829 414 0 0 0 chr12 32080115 32080161 -89177369 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1 829 1109 78 0 0 chr12 32080162 32080316 -89177214 - B2_Mm2 SINE B2 -41 154 1 1 829 222 118 0 0 chr12 32081529 32081563 -89175967 + (T)n Simple_repeat Simple_repeat 1 34 0 1 829 23 33 0 0 chr12 32081680 32081710 -89175820 + AT_rich Low_complexity Low_complexity 1 30 0 1 829 395 269 121 27 chr12 32081710 32081859 -89175671 + B4A SINE B4 1 163 -129 1 829 311 339 102 28 chr12 32081888 32082173 -89175357 + L1MB4 LINE L1 5841 6146 -34 1 829 439 242 11 0 chr12 32084289 32084380 -89173150 - PB1D10 SINE Alu -20 97 6 1 829 641 118 8 0 chr12 32084426 32084545 -89172985 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 829 604 272 45 41 chr12 32084669 32084914 -89172616 + MLT1D LTR MaLR 253 498 -7 1 829 539 250 40 45 chr12 32085417 32085593 -89171937 + L1ME1 LINE L1 5517 5691 -488 1 829 205 218 0 25 chr12 32085602 32085682 -89171848 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 829 260 208 61 50 chr12 32085756 32085873 -89171657 + L1ME1 LINE L1 5785 5905 -274 1 829 529 259 9 0 chr12 32085873 32085989 -89171541 + PB1D10 SINE Alu 1 117 0 1 829 237 280 64 91 chr12 32085989 32086091 -89171439 + L1ME1 LINE L1 5906 6002 -177 1 829 409 355 30 47 chr12 32087352 32087713 -89169817 + L2a LINE L2 3056 3410 -16 1 829 483 18 0 0 chr12 32089241 32089297 -89168233 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 829 261 119 0 0 chr12 32089378 32089420 -89168110 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 829 614 249 53 11 chr12 32089526 32089713 -89167817 + L1MA5 LINE L1 6101 6295 -5 1 829 365 264 144 152 chr12 32090296 32090573 -89166957 - B4A SINE B4 -13 279 5 1 829 757 213 0 0 chr12 32090605 32090746 -89166784 - B1_Mur2 SINE Alu -7 142 2 1 829 203 311 0 13 chr12 32091620 32091695 -89165835 - MIRb SINE MIR -64 204 131 1 829 576 138 211 39 chr12 32091867 32091995 -89165535 + B1_Mur4 SINE Alu 1 150 0 1 829 392 253 30 50 chr12 32092359 32092459 -89165071 - PB1D10 SINE Alu -19 98 1 1 829 238 365 5 10 chr12 32093040 32093161 -89164369 - MIR SINE MIR -99 177 48 1 829 200 250 181 45 chr12 32093157 32093312 -89164218 - MIRb SINE MIR -89 179 4 1 829 307 206 35 53 chr12 32093359 32093472 -89164058 + CT-rich Low_complexity Low_complexity 3 113 0 1 829 1847 58 12 8 chr12 32094321 32094563 -89162967 + L1_Mus1 LINE L1 6325 6567 0 1 829 492 259 223 47 chr12 32095231 32095447 -89162083 - MLT1D LTR MaLR -1 504 240 1 829 501 47 0 0 chr12 32095447 32095511 -89162019 + (TCTCCC)n Simple_repeat Simple_repeat 4 67 0 1 829 492 259 223 47 chr12 32095511 32095720 -89161810 - MLT1D LTR MaLR -266 239 5 1 829 227 287 102 11 chr12 32095735 32095823 -89161707 + L2c LINE L2 3287 3382 -5 1 829 294 320 134 20 chr12 32096088 32096289 -89161241 - L2b LINE L2 -255 3171 2946 1 829 569 266 236 20 chr12 32096621 32096962 -89160568 + L1MB5 LINE L1 4839 5272 -874 1 829 207 69 0 0 chr12 32096962 32096991 -89160539 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 829 569 266 236 20 chr12 32096991 32097094 -89160436 + L1MB5 LINE L1 5273 5379 -767 1 829 297 259 45 34 chr12 32097113 32097201 -89160329 + PB1D10 SINE Alu 6 94 -23 1 829 1493 304 66 26 chr12 32097236 32097922 -89159608 + L1MB5 LINE L1 5425 6137 -37 1 829 807 222 130 43 chr12 32097990 32098244 -89159286 - Lx4B LINE L1 -5 7053 6778 1 829 938 60 53 0 chr12 32098369 32098520 -89159010 + (TCCCC)n Simple_repeat Simple_repeat 5 163 0 1 829 207 340 50 10 chr12 32099291 32099392 -89158138 - MIRb SINE MIR -1 267 163 1 829 444 211 63 0 chr12 32099658 32099753 -89157777 - ID_B1 SINE B4 -11 213 113 1 829 417 284 64 9 chr12 32099783 32099893 -89157637 - PB1D7 SINE Alu -2 118 3 1 829 549 234 116 24 chr12 32099939 32100197 -89157333 + L1MC4a LINE L1 6948 7255 -627 1 829 437 197 81 66 chr12 32100230 32100366 -89157164 + L1MC4a LINE L1 7687 7805 -190 1 829 811 251 58 30 chr12 32100785 32101115 -89156415 + MLT2C1 LTR ERVL 4 338 -126 1 829 1062 100 0 0 chr12 32101177 32101357 -89156173 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 829 235 175 0 0 chr12 32101366 32101406 -89156124 + MLT2C1 LTR ERVL 520 559 -1 1 829 706 251 104 37 chr12 32101411 32101709 -89155821 + L1MC3 LINE L1 7460 7777 -8 1 829 255 274 14 14 chr12 32102521 32102595 -89154935 + CT-rich Low_complexity Low_complexity 2 75 0 1 829 1213 48 0 0 chr12 32102992 32103139 -89154391 + B1_Mus2 SINE Alu 1 147 0 1 829 216 0 0 0 chr12 32103139 32103163 -89154367 + (A)n Simple_repeat Simple_repeat 1 24 0 1 829 290 254 38 101 chr12 32103403 32103561 -89153969 + LTR81B LTR ERV1? 101 248 -1145 1 829 256 77 19 19 chr12 32105119 32105172 -89152358 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 1 829 379 200 67 83 chr12 32106056 32106176 -89151354 - RSINE1 SINE B4 0 165 48 1 829 703 281 99 36 chr12 32106396 32106799 -89150731 - Charlie1b DNA MER1_type 0 523 94 1 829 1536 251 126 0 chr12 32106799 32107245 -89150285 - MLT1D LTR MaLR -3 502 1 1 829 692 314 23 73 chr12 32107251 32107512 -89150018 + B4A SINE B4 22 269 -23 1 829 369 0 0 0 chr12 32107512 32107553 -89149977 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 829 180 49 47 47 chr12 32109082 32109125 -89148405 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 1 829 251 283 0 0 chr12 32109258 32109318 -89148212 + B4A SINE B4 229 288 -4 1 829 195 184 0 0 chr12 32109395 32109433 -89148097 + A-rich Low_complexity Low_complexity 1 38 0 1 829 3228 61 2 8 chr12 32109574 32109972 -89147558 + MTA_Mm LTR MaLR 1 396 0 1 829 259 269 21 0 chr12 32112192 32112285 -89145245 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 830 22 35 0 0 chr12 32112787 32112816 -89144714 + AT_rich Low_complexity Low_complexity 1 29 0 1 830 1298 92 11 0 chr12 32113042 32113216 -89144314 + B2_Mm1t SINE B2 4 179 -14 1 830 296 170 0 0 chr12 32113269 32113322 -89144208 + B2_Mm2 SINE B2 49 101 -94 1 830 889 249 5 45 chr12 32114804 32115027 -89142503 - B3 SINE B2 -1 215 2 1 830 1167 275 122 65 chr12 32115126 32115760 -89141770 - Lx9 LINE L1 -15 7629 6960 1 830 692 284 66 39 chr12 32116211 32116467 -89141063 + B4A SINE B4 2 264 -28 1 830 396 0 0 0 chr12 32116488 32116532 -89140998 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 830 21 0 0 0 chr12 32116626 32116647 -89140883 + AT_rich Low_complexity Low_complexity 1 21 0 1 830 777 323 98 42 chr12 32116736 32117326 -89140204 + L1ME2 LINE L1 5452 6077 -87 1 830 993 274 137 9 chr12 32117326 32117772 -89139758 + MLT1D LTR MaLR 2 504 -1 1 830 777 317 95 48 chr12 32117772 32117820 -89139710 + L1ME2 LINE L1 6078 6122 -42 1 830 529 290 134 24 chr12 32117838 32118128 -89139402 + MLT1C LTR MaLR 1 322 -145 1 830 996 136 0 0 chr12 32118170 32118332 -89139198 + (TTC)n Simple_repeat Simple_repeat 2 163 0 1 830 216 0 0 0 chr12 32118725 32118749 -89138781 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 830 450 0 0 0 chr12 32118749 32118798 -89138732 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 830 360 252 105 47 chr12 32118798 32118969 -89138561 - L1MA9 LINE L1 -167 6145 5965 1 830 306 316 0 49 chr12 32119390 32119513 -89138017 + Arthur1A DNA Tip100 1 117 -60 1 830 637 287 17 6 chr12 32119755 32119927 -89137603 + B3 SINE B2 28 201 -15 1 830 457 109 0 71 chr12 32120004 32120103 -89137427 - L1Md_F3 LINE L1 -1 6583 6492 2 830 848 177 13 26 chr12 32120165 32120303 -89137227 + B1_Mur4 SINE Alu 1 140 -10 2 830 878 90 15 0 chr12 32120303 32120436 -89137094 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 2 830 848 177 13 26 chr12 32120436 32120448 -89137082 + B1_Mur4 SINE Alu 141 149 -1 2 830 22 0 0 0 chr12 32120555 32120577 -89136953 + GC_rich Low_complexity Low_complexity 1 22 0 2 830 291 233 55 0 chr12 32120622 32120695 -89136835 - PB1D9 SINE Alu -8 112 36 2 830 24 0 0 0 chr12 32120926 32120950 -89136580 + AT_rich Low_complexity Low_complexity 1 24 0 2 830 518 284 95 34 chr12 32120995 32121247 -89136283 - MTD LTR MaLR -89 330 56 2 830 233 196 18 0 chr12 32121247 32121303 -89136227 - L1M5 LINE L1 -1460 4686 4630 2 830 229 89 22 22 chr12 32121324 32121370 -89136160 + (TTA)n Simple_repeat Simple_repeat 1 46 0 2 830 1120 79 164 0 chr12 32121858 32122023 -89135507 - B2_Mm2 SINE B2 -3 192 1 2 830 331 233 133 0 chr12 32122123 32122243 -89135287 - L2 LINE L2 -853 2566 2431 2 830 180 0 0 0 chr12 32123145 32123165 -89134365 + (A)n Simple_repeat Simple_repeat 1 20 0 2 830 429 280 76 0 chr12 32123927 32124045 -89133485 - B1F SINE Alu -2 147 21 2 830 927 303 11 14 chr12 32124547 32124908 -89132622 - L1MA4 LINE L1 -451 5849 5490 2 830 1771 131 140 6 chr12 32125723 32126022 -89131508 - ORR1B2 LTR MaLR -2 365 24 2 830 507 33 0 0 chr12 32126022 32126083 -89131447 + (TGG)n Simple_repeat Simple_repeat 2 62 0 2 830 1771 131 140 6 chr12 32126083 32126105 -89131425 - ORR1B2 LTR MaLR -344 23 2 2 830 3944 55 51 0 chr12 32126734 32127282 -89130248 + MT2B2 LTR ERVL 1 576 -8 2 830 315 73 18 0 chr12 32127320 32127375 -89130155 - 4.5SRNA scRNA scRNA -38 56 1 2 830 276 100 0 0 chr12 32129462 32129502 -89128028 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 2 830 225 0 0 0 chr12 32129578 32129603 -89127927 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 830 216 244 99 37 chr12 32130508 32130589 -89126941 + MIRb SINE MIR 131 216 -52 2 830 814 161 204 0 chr12 32130661 32130847 -89126683 - URR1B DNA MER1_type 0 225 2 2 830 693 223 0 8 chr12 32131480 32131611 -89125919 + B1_Mur1 SINE Alu 13 142 -7 2 830 249 108 0 0 chr12 32131704 32131741 -89125789 + (A)n Simple_repeat Simple_repeat 1 37 0 2 830 423 38 0 0 chr12 32132822 32132875 -89124655 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 830 425 19 19 0 chr12 32134193 32134247 -89123283 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2 830 202 184 20 39 chr12 32134349 32134400 -89123130 + C-rich Low_complexity Low_complexity 2 51 0 2 830 549 42 0 0 chr12 32134586 32134658 -89122872 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 2 830 531 264 0 16 chr12 32135137 32135264 -89122266 - RSINE1 SINE B4 -39 126 2 2 830 281 198 66 110 chr12 32135862 32135875 -89121655 + MT2B LTR ERVL 153 161 -440 2 830 453 183 73 0 chr12 32135875 32135957 -89121573 + B1_Mur3 SINE Alu 1 88 -61 2 830 243 161 0 0 chr12 32135957 32136013 -89121517 + (TCTG)n Simple_repeat Simple_repeat 4 59 0 2 830 499 232 28 48 chr12 32136148 32136293 -89121237 - MER57-int LTR ERV1 0 7537 7396 2 830 349 270 10 0 chr12 32136455 32136555 -89120975 - MER57A-int LTR ERV1 -244 5943 5843 2 830 192 40 0 0 chr12 32136821 32136846 -89120684 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 830 270 73 0 0 chr12 32137081 32137122 -89120408 + (A)n Simple_repeat Simple_repeat 1 41 0 2 830 216 0 0 0 chr12 32137729 32137753 -89119777 + (A)n Simple_repeat Simple_repeat 1 24 0 2 830 231 36 0 0 chr12 32137864 32137892 -89119638 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 2 830 3459 134 14 35 chr12 32137903 32138483 -89119047 - Lx4B LINE L1 -61 6997 6430 2 830 225 0 0 0 chr12 32138984 32139009 -89118521 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 830 611 236 159 0 chr12 32139046 32139203 -89118327 + B3A SINE B2 1 182 -16 2 830 29 60 0 0 chr12 32139220 32139270 -89118260 + AT_rich Low_complexity Low_complexity 1 50 0 2 830 214 292 67 11 chr12 32140731 32140821 -89116709 - MIRc SINE MIR -60 208 114 2 830 4901 80 15 16 chr12 32142716 32143402 -89114128 - L1_Mus3 LINE L1 -8 6630 5946 2 830 377 372 5 21 chr12 32143696 32143883 -89113647 + MIRb SINE MIR 34 217 -51 2 830 798 102 0 0 chr12 32144355 32144482 -89113048 + (TC)n Simple_repeat Simple_repeat 2 128 0 2 830 957 42 0 0 chr12 32145147 32145265 -89112265 + (TC)n Simple_repeat Simple_repeat 1 118 0 2 830 1056 152 33 0 chr12 32145277 32145461 -89112069 - B3 SINE B2 -26 190 1 2 830 397 256 44 0 chr12 32146864 32146954 -89110576 + PB1D10 SINE Alu 12 105 -12 2 830 1387 73 0 35 chr12 32146954 32147153 -89110377 - B2_Mm2 SINE B2 -1 194 3 2 830 592 225 125 20 chr12 32147174 32147361 -89110169 + B3A SINE B2 3 203 -13 2 830 222 128 0 0 chr12 32147877 32147916 -89109614 + (CTTG)n Simple_repeat Simple_repeat 1 39 0 2 830 261 197 75 50 chr12 32147917 32147997 -89109533 - ID4 SINE ID 0 83 2 2 830 707 246 120 0 chr12 32148567 32148758 -89108772 + B3 SINE B2 2 215 -1 2 830 1369 66 33 0 chr12 32150232 32150415 -89107115 + B2_Mm2 SINE B2 1 189 -6 2 830 798 67 0 0 chr12 32150419 32150524 -89107006 + (GGGA)n Simple_repeat Simple_repeat 4 108 0 2 830 690 247 6 42 chr12 32150887 32151052 -89106478 - RSINE1 SINE B4 -5 160 2 2 830 21 0 0 0 chr12 32151077 32151098 -89106432 + AT_rich Low_complexity Low_complexity 1 21 0 2 830 492 18 0 0 chr12 32151637 32151694 -89105836 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 830 428 207 76 25 chr12 32151706 32151825 -89105705 - B4A SINE B4 -165 127 3 2 830 229 94 57 0 chr12 32152261 32152314 -89105216 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 2 830 568 223 29 0 chr12 32152342 32152481 -89105049 - ID_B1 SINE B4 -2 222 80 2 830 783 184 7 34 chr12 32152895 32153041 -89104489 + B1_Mur4 SINE Alu 1 142 -8 2 830 211 116 68 23 chr12 32153468 32153512 -89104018 - PB1D10 SINE Alu -1 116 71 2 830 273 283 208 23 chr12 32154372 32154502 -89103028 - L2a LINE L2 0 3426 3273 2 830 501 32 0 0 chr12 32156062 32156125 -89101405 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 830 383 319 40 54 chr12 32156136 32156285 -89101245 + RSINE1 SINE B4 15 161 -4 2 830 293 249 31 72 chr12 32156808 32156955 -89100575 - MIR SINE MIR -66 202 54 2 830 357 24 0 0 chr12 32157280 32157322 -89100208 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 830 447 284 71 0 chr12 32157615 32157742 -89099788 + RSINE1 SINE B4 11 146 -19 2 830 369 0 0 0 chr12 32157850 32157891 -89099639 + (TATTG)n Simple_repeat Simple_repeat 5 45 0 2 830 648 228 170 0 chr12 32157991 32158162 -89099368 + B3 SINE B2 4 203 -13 2 830 1367 90 37 0 chr12 32158886 32159074 -89098456 - B2_Mm2 SINE B2 0 195 1 2 830 1178 62 0 14 chr12 32159442 32159590 -89097940 - B1_Mus2 SINE Alu 0 147 2 2 830 12965 42 4 67 chr12 32159723 32160558 -89096972 - L1_Mus1 LINE L1 0 6567 5792 2 830 1221 55 0 0 chr12 32160558 32160704 -89096826 - B1_Mm SINE Alu -1 146 1 2 830 12965 90 7 24 chr12 32160704 32161510 -89096020 - L1_Mus1 LINE L1 -92 5791 4991 2 830 3239 23 59 0 chr12 32161510 32161899 -89095631 - L1Md_F2 LINE L1 -1 6581 6170 2 830 12965 90 7 24 chr12 32161899 32162825 -89094705 - L1_Mus1 LINE L1 -893 4990 4069 2 830 216 0 0 0 chr12 32163283 32163307 -89094223 + (A)n Simple_repeat Simple_repeat 1 24 0 2 830 1653 37 0 0 chr12 32163310 32163501 -89094029 + B2_Mm1a SINE B2 1 191 -2 2 830 287 145 0 113 chr12 32163537 32163599 -89093931 - B2_Mm2 SINE B2 -94 101 47 2 830 867 133 0 0 chr12 32163666 32163801 -89093729 - B2_Mm2 SINE B2 -59 136 2 2 830 21 0 0 0 chr12 32164058 32164079 -89093451 + AT_rich Low_complexity Low_complexity 1 21 0 2 830 258 314 78 0 chr12 32164878 32164980 -89092550 - B1F1 SINE Alu -29 120 11 2 830 420 194 84 28 chr12 32165299 32165472 -89092058 - B3 SINE B2 -2 214 2 2 830 201 282 36 60 chr12 32165550 32165633 -89091897 + L2c LINE L2 3282 3362 -25 2 830 432 0 0 0 chr12 32165642 32165690 -89091840 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 830 378 271 80 34 chr12 32165721 32165897 -89091633 + L2a LINE L2 2694 2877 -542 2 830 191 341 113 8 chr12 32166031 32166164 -89091366 + L2a LINE L2 3001 3147 -279 2 830 2808 174 37 9 chr12 32166434 32166517 -89091013 - RLTR20D LTR ERVK -6 562 477 2 830 432 0 0 0 chr12 32166517 32166565 -89090965 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 830 2808 174 37 9 chr12 32166565 32167026 -89090504 - RLTR20D LTR ERVK -92 476 5 2 830 5714 136 95 75 chr12 32167029 32168436 -89089094 - MYSERV16_I-int LTR ERVK -232 2610 1066 2 830 1132 145 16 0 chr12 32168440 32168626 -89088904 - RLTR20D LTR ERVK -368 200 12 2 830 222 37 0 0 chr12 32168779 32168806 -89088724 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2 830 21 0 0 0 chr12 32173242 32173263 -89084267 + AT_rich Low_complexity Low_complexity 1 21 0 2 830 868 157 249 6 chr12 32173847 32174020 -89083510 + B3 SINE B2 2 216 0 2 830 449 281 24 30 chr12 32174821 32174986 -89082544 + RSINE1 SINE B4 2 165 0 2 830 396 0 0 0 chr12 32175547 32175591 -89081939 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 2 830 540 111 0 0 chr12 32175591 32175671 -89081859 + (TCTG)n Simple_repeat Simple_repeat 1 81 0 2 830 319 250 88 0 chr12 32175672 32175752 -89081778 - PB1D9 SINE Alu -6 114 28 2 830 189 0 0 0 chr12 32175752 32175773 -89081757 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 2 830 375 168 272 144 chr12 32175775 32175900 -89081630 - B1_Mus1 SINE Alu -6 142 2 2 830 409 281 21 14 chr12 32175996 32176137 -89081393 - ID_B1 SINE B4 0 224 83 2 830 21 57 0 0 chr12 32176326 32176361 -89081169 + AT_rich Low_complexity Low_complexity 1 35 0 3 830 192 125 0 0 chr12 32176656 32176688 -89080842 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 830 754 59 244 8 chr12 32176689 32176808 -89080722 - B1_Mus1 SINE Alu 0 148 2 3 830 22 80 0 0 chr12 32177087 32177137 -89080393 + AT_rich Low_complexity Low_complexity 1 50 0 3 830 194 314 43 0 chr12 32177434 32177504 -89080026 - MIR3 SINE MIR -6 202 130 3 830 251 315 107 9 chr12 32177812 32177924 -89079606 - MER58B DNA MER1_type -3 338 216 3 830 228 266 52 21 chr12 32178292 32178388 -89079142 + PB1D10 SINE Alu 14 112 -5 3 830 294 308 95 9 chr12 32178542 32178647 -89078883 - RSINE1 SINE B4 -31 134 21 3 830 347 189 220 11 chr12 32178780 32178871 -89078659 - PB1D10 SINE Alu -5 112 3 3 830 910 176 14 0 chr12 32178888 32179036 -89078494 - B1_Mur4 SINE Alu 0 150 1 3 830 593 210 44 2 chr12 32179232 32179405 -89078125 - B3 SINE B2 -7 188 3 3 830 210 37 0 0 chr12 32179818 32179845 -89077685 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 3 830 395 333 45 0 chr12 32180180 32180312 -89077218 - RSINE1 SINE B4 -23 142 5 3 830 30 27 0 0 chr12 32181511 32181548 -89075982 + AT_rich Low_complexity Low_complexity 1 37 0 3 830 246 161 193 18 chr12 32181596 32181653 -89075877 + ID4_ SINE ID 4 70 -13 3 830 21 36 0 0 chr12 32181938 32181966 -89075564 + AT_rich Low_complexity Low_complexity 1 28 0 3 830 1175 68 0 0 chr12 32182205 32182351 -89075179 + B1_Mus2 SINE Alu 2 147 0 3 830 1196 42 7 0 chr12 32182466 32182610 -89074920 - B1_Mm SINE Alu 0 147 3 3 830 224 100 0 24 chr12 32183258 32183299 -89074231 + (TTTTC)n Simple_repeat Simple_repeat 4 43 0 3 830 1218 54 0 0 chr12 32183299 32183446 -89074084 - B1_Mus1 SINE Alu 0 148 2 3 830 256 290 0 28 chr12 32186176 32186247 -89071283 + CT-rich Low_complexity Low_complexity 4 72 0 3 830 290 184 0 0 chr12 32186675 32186724 -89070806 + PB1D10 SINE Alu 43 91 -26 3 830 924 257 187 11 chr12 32187098 32187573 -89069957 - L1MA5A LINE L1 -365 5932 5374 3 830 522 203 48 63 chr12 32187599 32187725 -89069805 - B3 SINE B2 -11 205 82 3 830 2512 103 190 2 chr12 32187725 32188125 -89069405 - MT2C_Mm LTR ERVL 0 475 1 3 830 1019 154 11 16 chr12 32188151 32188336 -89069194 + B2_Mm2 SINE B2 3 186 -9 3 830 1263 316 119 23 chr12 32188522 32189208 -89068322 - Lx8 LINE L1 -123 7350 6599 3 830 633 172 110 15 chr12 32189265 32189401 -89068129 - Lx8 LINE L1 -991 6482 6334 3 830 231 36 0 0 chr12 32189412 32189440 -89068090 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 830 427 289 160 5 chr12 32190132 32190347 -89067183 - MLT1A0 LTR MaLR -117 248 1 3 830 357 304 78 31 chr12 32190391 32190520 -89067010 - ID_B1 SINE B4 -2 222 88 3 830 3308 41 78 54 chr12 32190614 32191078 -89066452 - MT2C_Mm LTR ERVL 0 475 1 3 830 632 81 31 15 chr12 32191098 32191211 -89066319 - B1_Mur4 SINE Alu 0 150 2 3 830 1212 34 0 26 chr12 32191727 32191878 -89065652 - B1_Mus1 SINE Alu 0 148 2 3 830 770 0 11 0 chr12 32191887 32191977 -89065553 + (TTC)n Simple_repeat Simple_repeat 1 91 0 3 830 1457 55 5 5 chr12 32191978 32192162 -89065368 - B2_Mm2 SINE B2 -9 186 3 3 830 555 260 12 68 chr12 32192413 32192574 -89064956 - RSINE1 SINE B4 -12 153 2 3 830 295 274 0 50 chr12 32193785 32193885 -89063645 - PB1D10 SINE Alu 0 117 23 3 830 2416 129 56 3 chr12 32194652 32195026 -89062504 + ORR1B1 LTR MaLR 1 394 0 3 830 180 0 0 0 chr12 32195033 32195053 -89062477 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 3 830 831 147 0 0 chr12 32195059 32195188 -89062342 - B1_Mus1 SINE Alu -1 147 19 3 830 369 0 0 0 chr12 32195188 32195229 -89062301 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 830 1161 96 0 0 chr12 32195653 32195831 -89061699 + (TCTCCC)n Simple_repeat Simple_repeat 1 178 0 3 830 857 99 34 23 chr12 32195853 32196028 -89061502 + C-rich Low_complexity Low_complexity 1 177 0 3 830 348 176 0 0 chr12 32196045 32196113 -89061417 + C-rich Low_complexity Low_complexity 2 69 0 3 830 324 0 0 0 chr12 32196179 32196215 -89061315 + (T)n Simple_repeat Simple_repeat 1 36 0 3 830 428 88 146 24 chr12 32196686 32196768 -89060762 + B1_Mur4 SINE Alu 58 149 -1 3 830 1032 121 0 0 chr12 32196842 32196982 -89060548 + B1_Mus2 SINE Alu 1 140 -7 3 830 379 200 80 0 chr12 32197357 32197432 -89060098 - ID4_ SINE ID 0 83 3 3 830 339 167 119 0 chr12 32197477 32197561 -89059969 + L1MA5 LINE L1 6202 6295 -5 3 830 253 274 120 0 chr12 32197580 32197697 -89059833 + MER2 DNA MER2_type 85 215 -130 3 830 211 361 6 54 chr12 32197770 32197937 -89059593 + L2a LINE L2 3266 3424 -2 3 830 185 244 85 43 chr12 32198697 32198791 -89058739 + L2 LINE L2 2871 2968 -451 3 830 523 229 177 27 chr12 32200157 32200481 -89057049 - MTD LTR MaLR -14 405 6 3 830 381 298 140 18 chr12 32200535 32200764 -89056766 + L1MD2 LINE L1 6085 6341 -18 3 830 1145 61 0 7 chr12 32200885 32201033 -89056497 - B1_Mus2 SINE Alu 0 147 1 3 830 336 317 33 9 chr12 32202330 32202454 -89055076 + PB1D10 SINE Alu 6 122 -25 3 830 253 287 22 52 chr12 32202472 32202608 -89054922 + L1ME3A LINE L1 5997 6128 -45 3 830 273 167 0 0 chr12 32202620 32202674 -89054856 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 830 428 257 18 9 chr12 32204131 32204245 -89053285 - PB1D10 SINE Alu -2 115 1 3 830 593 147 241 0 chr12 32204339 32204455 -89053075 + B1_Mus1 SINE Alu 5 148 0 3 830 913 205 107 10 chr12 32204485 32204682 -89052848 + B3 SINE B2 1 216 0 3 830 200 281 104 32 chr12 32205472 32205597 -89051933 - MIRc SINE MIR -109 159 26 3 830 653 265 31 6 chr12 32205718 32205881 -89051649 - ID_B1 SINE B4 -9 215 49 3 830 1329 171 0 0 chr12 32208666 32208876 -89048654 - B3 SINE B2 -6 210 1 3 830 952 208 167 12 chr12 32209178 32209486 -89048044 + ORR1E LTR MaLR 9 374 0 3 830 605 315 29 5 chr12 32209683 32209887 -89047643 - B4A SINE B4 -2 290 82 3 830 313 291 38 28 chr12 32210645 32210751 -89046779 + LTR16A1 LTR ERVL 38 144 -312 3 830 241 176 59 0 chr12 32210947 32210998 -89046532 + LTR16A1 LTR ERVL 398 451 -5 3 830 24 0 0 0 chr12 32211372 32211396 -89046134 + AT_rich Low_complexity Low_complexity 1 24 0 3 830 342 283 40 0 chr12 32211683 32211782 -89045748 + PB1D10 SINE Alu 12 114 -3 3 830 1296 108 0 0 chr12 32211922 32212098 -89045432 + B2_Mm2 SINE B2 1 176 -19 3 830 239 326 28 28 chr12 32212121 32212266 -89045264 + L1MD1 LINE L1 6068 6212 -30 3 830 335 359 104 0 chr12 32213152 32213344 -89044186 - MIR SINE MIR -29 233 22 3 830 282 95 0 0 chr12 32213355 32213397 -89044133 + (GGA)n Simple_repeat Simple_repeat 3 44 0 3 830 492 254 66 86 chr12 32214498 32214696 -89042834 - B3A SINE B2 -4 194 1 3 830 1232 66 0 6 chr12 32215021 32215189 -89042341 + (TCTCC)n Simple_repeat Simple_repeat 2 168 0 3 830 1517 194 122 0 chr12 32215250 32215611 -89041919 + MTD LTR MaLR 3 407 -12 3 830 591 296 27 11 chr12 32215661 32215849 -89041681 - B3A SINE B2 -7 191 1 3 830 24 53 0 0 chr12 32215858 32215896 -89041634 + AT_rich Low_complexity Low_complexity 1 38 0 3 830 569 186 19 19 chr12 32216108 32216267 -89041263 + C-rich Low_complexity Low_complexity 1 159 0 3 830 388 232 11 15 chr12 32216325 32216437 -89041093 - PB1D7 SINE Alu 0 120 9 3 830 516 70 0 34 chr12 32216677 32216766 -89040764 + (GGGA)n Simple_repeat Simple_repeat 4 89 0 3 830 351 142 354 0 chr12 32217541 32217654 -89039876 + B3 SINE B2 64 216 0 3 830 183 42 0 0 chr12 32218113 32218137 -89039393 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 830 230 414 9 0 chr12 32219815 32219926 -89037604 + MIRc SINE MIR 54 165 -103 3 830 205 146 0 40 chr12 32221892 32221942 -89035588 + C-rich Low_complexity Low_complexity 4 51 0 3 830 854 112 0 36 chr12 32223245 32223384 -89034146 + B3 SINE B2 2 135 -81 3 830 666 0 0 0 chr12 32223384 32223458 -89034072 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 830 328 206 95 0 chr12 32223486 32223549 -89033981 - ID4_ SINE ID -11 72 4 3 830 1159 153 5 5 chr12 32223564 32223748 -89033782 - B2_Mm2 SINE B2 -10 185 2 3 830 625 260 0 25 chr12 32224226 32224384 -89033146 + RSINE1 SINE B4 6 159 -6 3 830 1853 167 27 166 chr12 32224547 32224721 -89032809 + MTD LTR MaLR 1 120 -299 3 830 712 179 90 0 chr12 32224721 32224855 -89032675 - B1_Mus1 SINE Alu -2 146 1 3 830 1853 167 27 166 chr12 32224855 32225167 -89032363 + MTD LTR MaLR 121 419 0 3 830 570 15 0 0 chr12 32227455 32227522 -89030008 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 830 237 125 0 40 chr12 32227692 32227742 -89029788 + T-rich Low_complexity Low_complexity 2 49 0 3 830 541 235 0 0 chr12 32228084 32228186 -89029344 + B3A SINE B2 1 102 -96 3 830 468 0 0 0 chr12 32228609 32228661 -89028869 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 3 830 567 314 6 19 chr12 32229572 32229734 -89027796 + RSINE1 SINE B4 6 165 0 3 830 572 188 36 0 chr12 32230522 32230634 -89026896 - B3 SINE B2 -100 116 1 3 830 273 333 0 20 chr12 32230647 32230745 -89026785 - MIR SINE MIR -160 102 7 3 830 629 250 167 0 chr12 32230932 32231100 -89026430 - ID_B1 SINE B4 -28 196 1 3 830 288 324 122 22 chr12 32231507 32231646 -89025884 - MIRb SINE MIR -89 179 27 4 830 207 0 0 0 chr12 32233412 32233435 -89024095 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 830 1128 58 0 0 chr12 32233435 32233573 -89023957 - B1_Mm SINE Alu -9 138 1 4 830 984 137 11 27 chr12 32233584 32233771 -89023759 - B2_Mm2 SINE B2 -9 186 3 4 830 23 33 0 0 chr12 32234521 32234551 -89022979 + AT_rich Low_complexity Low_complexity 1 30 0 4 830 683 304 70 19 chr12 32235995 32236253 -89021277 - B4A SINE B4 -20 272 2 4 830 493 163 81 10 chr12 32236968 32237067 -89020463 - PB1D9 SINE Alu -13 107 2 4 830 318 50 0 0 chr12 32237744 32237784 -89019746 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 830 824 10 0 20 chr12 32237802 32237904 -89019626 + (TTTCC)n Simple_repeat Simple_repeat 4 103 0 4 830 645 105 0 0 chr12 32237904 32237999 -89019531 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 4 830 218 156 0 0 chr12 32238098 32238130 -89019400 + C-rich Low_complexity Low_complexity 4 35 0 4 830 237 200 20 0 chr12 32238330 32238380 -89019150 - ID4 SINE ID -31 52 2 4 830 1052 134 0 11 chr12 32238597 32238778 -89018752 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 830 675 121 210 0 chr12 32239584 32239708 -89017822 + B1_Mur4 SINE Alu 1 150 0 4 830 309 259 6 15 chr12 32239917 32240003 -89017527 - ID4_ SINE ID -61 91 5 4 830 236 261 84 32 chr12 32240149 32240244 -89017286 - MIRm SINE MIR -13 263 164 4 830 315 0 0 0 chr12 32240556 32240591 -89016939 + (TTA)n Simple_repeat Simple_repeat 2 36 0 4 830 381 220 33 11 chr12 32240591 32240683 -89016847 - PB1D9 SINE Alu -10 110 17 4 830 196 264 31 52 chr12 32240891 32240987 -89016543 + L2b LINE L2 3067 3160 -215 4 830 944 101 0 0 chr12 32241293 32241432 -89016098 + B1_Mus1 SINE Alu 9 147 -1 4 830 237 132 0 0 chr12 32241433 32241471 -89016059 + (A)n Simple_repeat Simple_repeat 1 38 0 4 830 798 202 0 0 chr12 32242712 32242880 -89014650 + (TA)n Simple_repeat Simple_repeat 1 168 0 4 830 200 35 35 0 chr12 32242879 32242908 -89014622 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 830 540 319 93 35 chr12 32242930 32243219 -89014311 + MER2 DNA MER2_type 32 337 -8 4 103 1005 95 0 0 chr12 32243625 32243794 -89013736 + (GA)n Simple_repeat Simple_repeat 2 170 0 4 831 189 0 0 0 chr12 32245548 32245569 -89011961 + (A)n Simple_repeat Simple_repeat 1 21 0 4 831 252 234 16 0 chr12 32245742 32245806 -89011724 + Charlie24 DNA MER1_type 2383 2447 -3 4 831 564 186 0 0 chr12 32245887 32246059 -89011471 + GA-rich Low_complexity Low_complexity 2 173 0 4 831 305 214 123 28 chr12 32246145 32246251 -89011279 + ORR1D2 LTR MaLR 251 366 -4 4 831 1176 75 0 0 chr12 32246291 32246438 -89011092 + B1_Mus1 SINE Alu 2 148 0 4 831 280 210 0 46 chr12 32246544 32246609 -89010921 + RSINE1 SINE B4 15 76 -89 4 831 207 0 0 0 chr12 32246663 32246686 -89010844 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 831 534 221 64 24 chr12 32246930 32247055 -89010475 + RSINE1 SINE B4 3 132 -33 4 831 460 248 57 50 chr12 32247359 32247499 -89010031 + B1F2 SINE Alu 2 142 -7 4 831 665 225 170 0 chr12 32248188 32248370 -89009160 + B3 SINE B2 4 216 0 4 831 1048 73 13 0 chr12 32248434 32248585 -89008945 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 4 831 27 81 0 0 chr12 32248613 32248675 -89008855 + AT_rich Low_complexity Low_complexity 1 62 0 4 831 798 184 15 0 chr12 32248715 32248851 -89008679 - B1_Mur3 SINE Alu -11 138 1 4 831 531 230 47 8 chr12 32249403 32249530 -89008000 + B4 SINE B4 138 269 -23 4 831 837 56 0 0 chr12 32249530 32249637 -89007893 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 831 1066 82 0 0 chr12 32249719 32249854 -89007676 + B1_Mus1 SINE Alu 1 135 -13 4 831 267 31 0 0 chr12 32249854 32249886 -89007644 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 831 40 91 0 0 chr12 32249890 32250000 -89007530 + AT_rich Low_complexity Low_complexity 1 110 0 4 831 266 347 40 8 chr12 32250355 32250480 -89007050 - L2a LINE L2 0 3426 3298 4 831 841 199 7 0 chr12 32250543 32250689 -89006841 + B1_Mus2 SINE Alu 1 147 0 4 831 3718 41 0 0 chr12 32250755 32251191 -89006339 - L1Md_F2 LINE L1 -245 6337 5902 4 831 1646 51 23 5 chr12 32251195 32251411 -89006119 + L1Md_F2 LINE L1 6361 6580 -2 4 831 318 26 0 0 chr12 32251501 32251540 -89005990 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 831 252 111 0 0 chr12 32251754 32251799 -89005731 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 4 831 24 53 0 0 chr12 32252008 32252046 -89005484 + AT_rich Low_complexity Low_complexity 1 38 0 4 831 1681 197 114 66 chr12 32252059 32252576 -89004954 + RLTR31_Mur LTR ERVK 1 542 -11 4 831 1016 174 46 129 chr12 32252605 32252955 -89004575 + RLTRETN_Mm LTR ERVK 2 322 0 4 831 273 215 188 31 chr12 32253108 32253204 -89004326 - MIRb SINE MIR -98 170 60 4 831 571 26 0 25 chr12 32253834 32253913 -89003617 + (TCCCC)n Simple_repeat Simple_repeat 3 79 0 4 831 547 164 0 72 chr12 32254183 32254308 -89003222 + B1_Mur1 SINE Alu 34 149 0 4 831 923 155 0 0 chr12 32254480 32254622 -89002908 + B1_Mur4 SINE Alu 1 142 -8 4 831 1161 315 141 43 chr12 32254679 32255564 -89001966 - L1MC3 LINE L1 -244 7541 6570 4 831 342 0 0 0 chr12 32255610 32255648 -89001882 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 831 222 302 112 34 chr12 32255678 32255767 -89001763 - RSINE1 SINE B4 -61 104 9 4 831 357 24 0 0 chr12 32255960 32256002 -89001528 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 831 180 0 0 0 chr12 32256045 32256065 -89001465 + (TAA)n Simple_repeat Simple_repeat 3 22 0 4 831 830 230 26 21 chr12 32256095 32256286 -89001244 + B3A SINE B2 2 193 -5 4 831 299 357 78 14 chr12 32256485 32256627 -89000903 - RSINE1 SINE B4 0 165 15 4 831 246 182 0 0 chr12 32256750 32256794 -89000736 + ID_B1 SINE B4 121 164 -60 4 831 872 173 12 0 chr12 32256818 32256991 -89000539 + GA-rich Low_complexity Low_complexity 3 177 0 4 831 303 183 17 0 chr12 32257706 32257766 -88999764 - MTD LTR MaLR 0 421 361 4 831 1076 174 4 58 chr12 32257766 32257955 -88999575 + MTC LTR MaLR 2 188 -233 4 831 1667 37 0 0 chr12 32257955 32258145 -88999385 - B2_Mm1a SINE B2 -2 191 2 4 831 1076 174 4 58 chr12 32258145 32258181 -88999349 + MTC LTR MaLR 189 215 -206 4 831 3564 203 149 39 chr12 32258237 32259143 -88998387 + RMER1B Other Other 50 1055 -11 4 831 1303 114 71 0 chr12 32259172 32259383 -88998147 + MTC LTR MaLR 196 421 0 4 831 888 191 62 0 chr12 32259383 32259559 -88997971 - MTD LTR MaLR -47 372 184 4 831 2078 250 33 42 chr12 32259581 32260154 -88997376 - MTD-int LTR MaLR -484 774 207 4 831 394 284 92 124 chr12 32260203 32260669 -88996861 + RLTR12B LTR ERVK 47 497 -31 4 831 579 220 114 36 chr12 32260687 32260880 -88996650 - MTD-int LTR MaLR -1050 208 1 4 831 1758 174 113 3 chr12 32260887 32261257 -88996273 - MTD LTR MaLR -7 412 2 4 831 672 268 81 29 chr12 32261284 32261607 -88995923 + Lx7 LINE L1 5657 6027 -129 4 831 432 182 73 0 chr12 32261683 32261907 -88995623 + (TA)n Simple_repeat Simple_repeat 1 240 0 4 831 28 61 0 0 chr12 32261913 32261962 -88995568 + AT_rich Low_complexity Low_complexity 1 49 0 4 831 2582 288 95 88 chr12 32261962 32262275 -88995255 + Lx8 LINE L1 6173 6531 -942 4 831 1856 175 23 50 chr12 32262275 32262659 -88994871 + ORR1D1 LTR MaLR 1 374 0 4 831 2582 288 95 88 chr12 32262659 32262893 -88994637 + Lx8 LINE L1 6532 6771 -702 4 831 400 133 0 0 chr12 32262893 32262953 -88994577 + B1_Mus2 SINE Alu 1 60 -87 4 831 2582 288 95 88 chr12 32262953 32263442 -88994088 + Lx8 LINE L1 6772 7276 -197 4 831 465 19 0 0 chr12 32263453 32263507 -88994023 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 831 195 204 0 0 chr12 32263524 32263568 -88993962 + GA-rich Low_complexity Low_complexity 1 44 0 4 831 495 255 163 50 chr12 32263750 32263952 -88993578 + MIR SINE MIR 36 260 -2 4 831 23 0 0 0 chr12 32264505 32264528 -88993002 + AT_rich Low_complexity Low_complexity 1 23 0 4 831 205 220 51 0 chr12 32264596 32264655 -88992875 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 4 831 494 302 69 58 chr12 32264673 32264947 -88992583 - B4A SINE B4 -14 278 2 4 831 859 57 16 0 chr12 32265229 32265351 -88992179 + (TTGGGG)n Simple_repeat Simple_repeat 5 128 0 4 831 186 43 0 0 chr12 32265419 32265442 -88992088 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 831 642 245 62 62 chr12 32265495 32265603 -88991927 + RMER15-int LTR ERVL 1494 1610 -3389 4 831 1341 159 23 0 chr12 32265603 32265823 -88991707 - URR1B DNA MER1_type 0 225 1 4 831 642 245 62 62 chr12 32265823 32265923 -88991607 + RMER15-int LTR ERVL 1611 1702 -3297 4 831 749 322 235 19 chr12 32265995 32266581 -88990949 + RMER15-int LTR ERVL 1812 2519 -2480 4 831 183 42 0 0 chr12 32266581 32266605 -88990925 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 831 749 272 137 4 chr12 32266605 32266634 -88990896 + RMER15-int LTR ERVL 2520 2557 -2442 4 831 1479 322 92 80 chr12 32266781 32267659 -88989871 + Lx8 LINE L1 6287 7175 -298 4 831 261 339 59 0 chr12 32267749 32267867 -88989663 + RMER15 LTR ERVL 403 527 -48 4 831 915 26 8 0 chr12 32268003 32268120 -88989410 + B1_Mus1 SINE Alu 22 139 -9 4 831 207 0 0 0 chr12 32268120 32268143 -88989387 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 831 756 237 30 0 chr12 32268323 32268492 -88989038 + B3A SINE B2 2 175 -23 4 831 238 345 91 7 chr12 32268786 32268929 -88988601 + MIR SINE MIR 108 262 0 4 831 512 255 24 30 chr12 32269930 32270096 -88987434 - HAL1 LINE L1 -683 1824 1660 4 831 567 43 0 0 chr12 32270096 32270166 -88987364 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 831 312 27 0 0 chr12 32270407 32270444 -88987086 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 831 464 207 108 20 chr12 32270487 32270635 -88986895 - HAL1 LINE L1 -816 1691 1531 4 831 802 240 125 18 chr12 32270740 32271012 -88986518 + MLT1A1 LTR MaLR 1 301 -107 4 831 212 200 15 0 chr12 32271133 32271198 -88986332 + CT-rich Low_complexity Low_complexity 2 67 0 4 831 1441 198 14 103 chr12 32271555 32271767 -88985763 - RMER17C LTR ERVK 0 410 221 4 831 663 48 0 0 chr12 32271767 32271850 -88985680 + (GGA)n Simple_repeat Simple_repeat 3 85 0 4 831 1441 198 14 103 chr12 32271850 32272083 -88985447 - RMER17C LTR ERVK -190 220 6 4 831 356 291 81 103 chr12 32272208 32272442 -88985088 - HAL1 LINE L1 -1673 834 606 4 831 310 309 247 6 chr12 32272499 32272815 -88984715 - HAL1 LINE L1 -2051 456 65 4 831 536 316 45 0 chr12 32273270 32273398 -88984132 + RSINE1 SINE B4 3 136 -29 4 831 818 158 41 0 chr12 32273398 32273544 -88983986 - RMER4B LTR ERVK 0 585 434 5 831 1617 162 12 60 chr12 32273548 32273882 -88983648 + ORR1A3 LTR MaLR 1 318 -8 5 831 2356 135 55 7 chr12 32273886 32274304 -88983226 - RMER4B LTR ERVK -147 438 1 5 831 375 41 0 0 chr12 32274328 32274377 -88983153 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 831 1853 201 117 5 chr12 32274568 32275003 -88982527 + ORR1B1-int LTR MaLR 2 485 -1024 5 831 369 226 34 25 chr12 32275102 32275220 -88982310 + MLT1D LTR MaLR 385 503 -2 5 831 312 238 181 0 chr12 32275374 32275479 -88982051 + Arthur1C DNA Tip100 114 237 -126 5 831 359 235 27 73 chr12 32275514 32275624 -88981906 - PB1D10 SINE Alu 0 117 13 5 831 306 0 0 0 chr12 32275664 32275698 -88981832 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 831 468 0 0 0 chr12 32275698 32275749 -88981781 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 831 400 173 77 16 chr12 32276110 32276198 -88981332 - B1F SINE Alu -46 103 13 5 831 258 267 95 38 chr12 32276198 32276215 -88981315 - B4A SINE B4 -100 192 82 5 831 1073 35 0 14 chr12 32276679 32276822 -88980708 + B1_Mus1 SINE Alu 8 148 0 5 831 207 0 0 0 chr12 32277191 32277214 -88980316 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 5 831 248 253 163 31 chr12 32277735 32277833 -88979697 - MLT1J LTR MaLR -111 401 291 5 831 500 293 127 6 chr12 32277903 32278061 -88979469 - MER20 DNA MER1_type -3 216 40 5 831 764 94 0 9 chr12 32279026 32279133 -88978397 + B1_Mus1 SINE Alu 2 107 -41 5 831 268 233 26 52 chr12 32279071 32279148 -88978382 + RLTR25A LTR ERVK 522 596 -507 5 831 237 227 99 33 chr12 32279298 32279389 -88978141 + RMER10A LTR ERVL 318 414 -28 5 831 219 366 92 52 chr12 32279685 32279858 -88977672 - MIRb SINE MIR -73 195 16 5 831 965 137 253 12 chr12 32282382 32282552 -88974978 - B3 SINE B2 -1 215 5 5 831 502 364 71 0 chr12 32283007 32283205 -88974325 - LTR33A LTR ERVL -304 216 5 5 831 296 211 13 0 chr12 32284261 32284337 -88973193 + CT-rich Low_complexity Low_complexity 4 80 0 5 831 229 286 0 0 chr12 32284355 32284397 -88973133 - B1F2 SINE Alu -107 42 1 5 831 206 301 106 30 chr12 32284411 32284574 -88972956 - MIR SINE MIR -16 252 83 5 831 217 250 25 89 chr12 32284686 32284765 -88972765 + ID4 SINE ID 1 74 -9 5 831 408 97 0 46 chr12 32284853 32284918 -88972612 + ORR1A3 LTR MaLR 265 326 0 5 831 1155 266 163 60 chr12 32285628 32286468 -88971062 - L1MC4 LINE L1 -1 8041 7115 5 831 475 144 10 58 chr12 32286492 32286595 -88970935 - URR1B DNA MER1_type -21 204 107 5 831 291 269 21 11 chr12 32286740 32286834 -88970696 + CT-rich Low_complexity Low_complexity 4 98 0 5 831 195 42 0 0 chr12 32287200 32287224 -88970306 + (T)n Simple_repeat Simple_repeat 1 24 0 5 831 288 0 0 0 chr12 32287420 32287452 -88970078 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 831 1113 242 100 26 chr12 32287495 32287805 -88969725 + MLT1A0 LTR MaLR 33 365 0 5 831 188 236 29 22 chr12 32289035 32289123 -88968407 + MIRm SINE MIR 155 253 -23 5 831 745 302 92 52 chr12 32289500 32289999 -88967531 + L1MC3 LINE L1 6799 7317 -468 5 831 292 193 35 0 chr12 32289999 32290056 -88967474 + RSINE1 SINE B4 3 61 -104 5 831 730 210 0 0 chr12 32290186 32290310 -88967220 - RSINE1 SINE B4 -21 144 21 5 831 958 154 0 7 chr12 32290446 32290583 -88966947 - B1_Mur4 SINE Alu -13 137 2 5 831 22 35 0 0 chr12 32290586 32290615 -88966915 + AT_rich Low_complexity Low_complexity 1 29 0 5 831 286 22 5 152 chr12 32290733 32290943 -88966587 + G-rich Low_complexity Low_complexity 1 179 0 5 831 355 198 25 17 chr12 32290943 32291061 -88966469 + (GTGTG)n Simple_repeat Simple_repeat 1 119 0 5 831 363 23 0 141 chr12 32291070 32291276 -88966254 + G-rich Low_complexity Low_complexity 3 179 0 5 831 963 254 5 9 chr12 32291599 32291810 -88965720 + B3 SINE B2 1 210 -6 5 831 192 266 100 89 chr12 32291868 32292028 -88965502 - L2c LINE L2 -170 3217 3058 5 831 1005 106 0 47 chr12 32292747 32292886 -88964644 + B1_Mus1 SINE Alu 5 138 -10 5 831 180 0 0 0 chr12 32292886 32292906 -88964624 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 831 916 185 193 4 chr12 32293174 32293423 -88964107 - ORR1D1 LTR MaLR -10 364 69 5 831 1411 89 15 25 chr12 32294119 32294315 -88963215 - B2_Mm2 SINE B2 0 195 2 5 831 860 176 181 0 chr12 32294670 32294852 -88962678 - B3 SINE B2 0 216 2 5 831 1071 67 45 0 chr12 32295038 32295172 -88962358 + B1_Mus1 SINE Alu 1 140 -8 5 831 506 158 23 1 chr12 32295716 32295813 -88961717 - B1_Mus1 SINE Alu -49 98 1 5 831 226 235 0 0 chr12 32296029 32296080 -88961450 + ID_B1 SINE B4 174 224 0 5 831 30 27 0 0 chr12 32296441 32296478 -88961052 + AT_rich Low_complexity Low_complexity 1 37 0 5 831 484 252 19 9 chr12 32296755 32296863 -88960667 - PB1D10 SINE Alu -7 110 2 5 831 1170 82 7 7 chr12 32297028 32297175 -88960355 - B1_Mus1 SINE Alu 0 148 2 5 831 374 288 33 17 chr12 32297274 32297394 -88960136 - ID_B1 SINE B4 0 224 103 5 831 804 150 40 67 chr12 32297518 32297668 -88959862 - B1_Mur3 SINE Alu 0 149 4 5 831 277 226 0 54 chr12 32298198 32298211 -88959319 - B3 SINE B2 -163 53 43 5 831 867 240 66 10 chr12 32298211 32298409 -88959121 - B3 SINE B2 -6 210 2 5 831 281 167 0 0 chr12 32298409 32298451 -88959079 - B3A SINE B2 -156 42 1 5 831 384 363 19 25 chr12 32299432 32299593 -88957937 - RSINE1 SINE B4 0 165 6 5 831 618 270 32 58 chr12 32299659 32299809 -88957721 - B4A SINE B4 -91 201 51 5 831 789 181 32 77 chr12 32299809 32299965 -88957565 - B1_Mur2 SINE Alu 0 149 1 5 831 618 270 32 58 chr12 32299965 32300003 -88957527 - B4A SINE B4 -242 50 18 5 831 360 64 0 0 chr12 32300003 32300050 -88957480 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 831 353 357 10 0 chr12 32300137 32300235 -88957295 - ID_B1 SINE B4 -122 102 4 5 831 1024 194 0 22 chr12 32300666 32300850 -88956680 + B3 SINE B2 37 216 0 5 831 21 0 0 0 chr12 32301512 32301533 -88955997 + AT_rich Low_complexity Low_complexity 1 21 0 5 831 652 269 28 28 chr12 32302222 32302402 -88955128 + B3A SINE B2 4 183 -15 5 831 315 85 0 0 chr12 32302459 32302506 -88955024 + (CACAA)n Simple_repeat Simple_repeat 3 49 0 5 831 5379 106 52 0 chr12 32302948 32303700 -88953830 + Lx2 LINE L1 6207 6997 0 5 831 1064 257 99 19 chr12 32303831 32304093 -88953437 + B4 SINE B4 10 292 0 5 831 1252 62 0 0 chr12 32304166 32304312 -88953218 + B1_Mus2 SINE Alu 2 147 0 5 831 284 280 26 61 chr12 32305259 32305306 -88952224 + B1F SINE Alu 40 89 -60 5 831 1174 158 29 19 chr12 32305306 32305513 -88952017 - B3 SINE B2 -6 210 2 5 831 284 280 26 61 chr12 32305513 32305579 -88951951 + B1F SINE Alu 90 149 0 5 831 391 264 75 30 chr12 32305776 32305909 -88951621 + MIR SINE MIR 100 238 -24 5 831 295 308 27 45 chr12 32305914 32306026 -88951504 - MIRm SINE MIR -130 146 37 5 831 250 250 0 0 chr12 32306410 32306458 -88951072 - MARNA DNA Mariner -393 193 146 5 831 22 35 0 0 chr12 32306516 32306545 -88950985 + AT_rich Low_complexity Low_complexity 1 29 0 5 831 221 314 69 76 chr12 32306924 32307055 -88950475 + RSINE1 SINE B4 8 137 -28 5 831 497 58 14 0 chr12 32307639 32307708 -88949822 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 5 831 366 362 88 24 chr12 32307975 32308386 -88949144 + Lx8 LINE L1 7035 7471 -2 5 831 1325 115 39 0 chr12 32308425 32308660 -88948870 + Lx4A LINE L1 6519 6788 -270 5 831 291 245 49 131 chr12 32308661 32308783 -88948747 + MT2B LTR ERVL 127 238 -363 5 831 432 200 12 24 chr12 32308713 32308795 -88948735 + B1_Mus2 SINE Alu 13 93 -54 5 831 2588 170 45 24 chr12 32309347 32309858 -88947672 + RMER1B Other Other 488 1009 -57 5 831 772 221 0 0 chr12 32309939 32310079 -88947451 - B1_Mus1 SINE Alu -1 147 8 5 831 749 143 0 40 chr12 32310374 32310498 -88947032 - B1_Mur2 SINE Alu 0 149 31 5 831 656 201 19 16 chr12 32310661 32310806 -88946724 + B1_Mur1 SINE Alu 2 142 -7 5 831 1027 191 129 35 chr12 32311172 32311459 -88946071 - Lx9 LINE L1 -7 7637 7324 5 831 823 175 28 14 chr12 32312419 32312564 -88944966 - B1_Mur2 SINE Alu -2 147 1 5 831 186 43 0 0 chr12 32312778 32312801 -88944729 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 5 831 243 0 0 0 chr12 32313196 32313223 -88944307 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 831 1137 46 0 0 chr12 32313224 32313355 -88944175 - B1_Mus2 SINE Alu -12 135 5 5 831 207 0 0 0 chr12 32313362 32313385 -88944145 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 5 831 409 183 184 97 chr12 32313396 32313499 -88944031 - PB1D9 SINE Alu -8 112 1 5 831 1286 41 0 0 chr12 32313593 32313738 -88943792 + B1_Mus2 SINE Alu 1 145 -2 5 831 208 242 90 75 chr12 32313946 32314013 -88943517 + MIRc SINE MIR 89 156 -112 5 831 261 321 99 53 chr12 32314620 32314730 -88942800 - MER58A DNA MER1_type -1 223 106 5 831 2549 106 104 0 chr12 32314730 32315087 -88942443 + ORR1B1 LTR MaLR 1 394 0 5 831 261 321 99 53 chr12 32315087 32315147 -88942383 - MER58A DNA MER1_type -119 105 45 5 831 747 197 42 7 chr12 32316007 32316150 -88941380 - B1_Mus1 SINE Alu 0 148 1 5 831 450 0 0 0 chr12 32316225 32316275 -88941255 + (CACG)n Simple_repeat Simple_repeat 2 51 0 5 831 729 254 118 43 chr12 32316291 32316546 -88940984 - B4 SINE B4 -17 275 2 5 831 329 242 104 22 chr12 32316660 32316795 -88940735 - B1F SINE Alu -3 146 1 5 831 205 286 234 0 chr12 32317534 32317688 -88939842 - MIR SINE MIR -1 261 72 6 831 369 299 9 18 chr12 32318473 32318582 -88938948 + G-rich Low_complexity Low_complexity 3 110 0 6 831 645 238 12 6 chr12 32318869 32319030 -88938500 - RSINE1 SINE B4 -1 164 3 6 831 24 85 0 0 chr12 32319490 32319549 -88937981 + GC_rich Low_complexity Low_complexity 1 59 0 6 831 1313 34 7 0 chr12 32320834 32320980 -88936550 + B1_Mus1 SINE Alu 2 148 0 6 831 311 214 27 67 chr12 32321469 32321544 -88935986 + ID4_ SINE ID 2 73 -10 6 831 29 60 0 0 chr12 32322099 32322149 -88935381 + AT_rich Low_complexity Low_complexity 1 50 0 6 831 370 364 26 59 chr12 32322172 32322324 -88935206 - RSINE1 SINE B4 0 165 19 6 831 387 0 0 0 chr12 32322891 32322934 -88934596 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 831 230 225 145 36 chr12 32322965 32323048 -88934482 - B1_Mur3 SINE Alu -43 106 15 6 831 290 258 16 0 chr12 32323008 32323070 -88934460 - B4 SINE B4 -153 139 77 6 831 1022 189 68 0 chr12 32323085 32323275 -88934255 - B3 SINE B2 -12 204 2 6 831 322 301 21 0 chr12 32323276 32323369 -88934161 - B4A SINE B4 -196 96 2 6 831 1215 68 14 0 chr12 32323529 32323675 -88933855 + B1_Mus1 SINE Alu 1 148 0 6 831 559 276 7 29 chr12 32324346 32324484 -88933046 - RSINE1 SINE B4 -28 137 3 6 831 1198 76 0 14 chr12 32324615 32324762 -88932768 + B1_Mus1 SINE Alu 3 147 -1 6 831 722 192 279 0 chr12 32325150 32325311 -88932219 - B3 SINE B2 -10 206 1 6 831 302 303 13 13 chr12 32325366 32325443 -88932087 - PB1D10 SINE Alu -39 78 2 6 831 1505 88 5 0 chr12 32327080 32327272 -88930258 + B2_Mm1t SINE B2 1 193 0 6 831 297 41 0 125 chr12 32327283 32327339 -88930191 + 4.5SRNA scRNA scRNA 38 86 -8 6 831 853 47 0 0 chr12 32327291 32327397 -88930133 + B1_Mus2 SINE Alu 42 147 0 6 831 188 121 91 0 chr12 32328318 32328351 -88929179 + MIRm SINE MIR 219 254 -22 6 831 1228 62 14 0 chr12 32328512 32328656 -88928874 - B1_Mm SINE Alu 0 147 2 6 831 800 214 76 10 chr12 32328717 32328915 -88928615 + MTD LTR MaLR 1 211 -208 6 831 1810 192 75 0 chr12 32328915 32329263 -88928267 + ORR1D1 LTR MaLR 1 374 0 6 831 6019 191 77 13 chr12 32329263 32330522 -88927008 + ORR1D1-int LTR MaLR 1 1340 -30 6 831 1511 213 104 15 chr12 32330542 32331037 -88926493 + ORR1D1 LTR MaLR 6 397 -22 6 831 321 264 44 26 chr12 32331271 32331384 -88926146 - RSINE1 SINE B4 -1 164 50 6 831 492 312 27 20 chr12 32331864 32332011 -88925519 - B1_Mur1 SINE Alu -1 148 1 6 831 419 109 13 0 chr12 32332045 32332109 -88925421 - B2_Mm2 SINE B2 -83 115 46 6 831 1359 74 11 33 chr12 32332122 32332303 -88925227 - B2_Mm1t SINE B2 -15 178 2 6 831 202 365 0 0 chr12 32332581 32332644 -88924886 - L2b LINE L2 -99 3276 3214 6 831 306 73 0 0 chr12 32332725 32332766 -88924764 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 831 202 244 0 0 chr12 32332853 32332898 -88924632 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 831 252 213 0 0 chr12 32332906 32332967 -88924563 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 831 363 326 10 0 chr12 32333181 32333279 -88924251 - MER5A DNA MER1_type -77 112 14 6 831 181 368 90 17 chr12 32333282 32333459 -88924071 - L2b LINE L2 -538 2881 2692 6 831 690 289 40 53 chr12 32333861 32333922 -88923608 + L1MB2 LINE L1 35 95 -6538 6 831 534 223 53 9 chr12 32333922 32334035 -88923495 - PB1D9 SINE Alu -2 118 1 6 831 690 289 40 53 chr12 32334035 32334295 -88923235 + L1MB2 LINE L1 96 352 -6281 6 831 393 313 118 24 chr12 32334534 32334789 -88922741 + L1MB2 LINE L1 717 995 -5638 6 831 522 273 194 59 chr12 32334808 32335011 -88922519 + L1MB2 LINE L1 4218 4440 -2097 6 831 1041 82 0 0 chr12 32335011 32335146 -88922384 + B1_Mus1 SINE Alu 2 136 -12 6 831 522 273 194 59 chr12 32335146 32335433 -88922097 + L1MB2 LINE L1 4441 4773 -1764 6 831 357 200 250 10 chr12 32335441 32335537 -88921993 + RSINE1 SINE B4 13 131 -34 6 831 180 97 0 0 chr12 32335584 32335615 -88921915 + (CAGT)n Simple_repeat Simple_repeat 1 31 0 6 831 1472 284 71 30 chr12 32335707 32336536 -88920994 + L1MB2 LINE L1 5577 6439 -123 6 831 708 251 92 15 chr12 32336743 32336949 -88920581 + ID_B1 SINE B4 2 223 -1 6 831 188 324 39 51 chr12 32336957 32337035 -88920495 - MIRb SINE MIR -156 112 36 6 831 270 284 38 11 chr12 32337351 32337453 -88920077 + BC1_Mm scRNA scRNA 2 103 -49 6 831 312 238 98 10 chr12 32337684 32337786 -88919744 - PB1D10 SINE Alu -6 111 1 6 831 673 250 30 69 chr12 32337950 32338152 -88919378 + B3A SINE B2 1 194 -4 6 831 23 33 0 0 chr12 32338202 32338232 -88919298 + AT_rich Low_complexity Low_complexity 1 30 0 6 831 362 287 67 44 chr12 32338795 32338930 -88918600 + MER5B DNA MER1_type 4 141 -37 6 831 347 299 28 99 chr12 32340584 32340609 -88916921 - B4A SINE B4 -46 246 158 6 831 680 188 58 29 chr12 32340609 32340746 -88916784 - B1_Mur3 SINE Alu -7 142 2 6 831 347 299 28 99 chr12 32340746 32340766 -88916764 - B4A SINE B4 -46 157 78 6 831 180 0 0 0 chr12 32341052 32341072 -88916458 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 831 923 133 0 27 chr12 32341404 32341551 -88915979 - B1_Mus1 SINE Alu -1 147 5 6 831 438 53 0 0 chr12 32341552 32341609 -88915921 + (TATG)n Simple_repeat Simple_repeat 2 58 0 6 831 321 265 82 0 chr12 32342057 32342155 -88915375 + MTD LTR MaLR 19 124 -295 6 831 4008 169 89 10 chr12 32342155 32342934 -88914596 - RMER1B Other Other -1 1065 226 6 831 243 0 0 0 chr12 32343092 32343119 -88914411 + (T)n Simple_repeat Simple_repeat 1 27 0 6 831 243 351 13 13 chr12 32343787 32343865 -88913665 - MER63D DNA AcHobo -983 78 1 6 831 250 292 130 24 chr12 32344339 32344462 -88913068 - L2a LINE L2 0 3426 3291 6 831 695 167 127 0 chr12 32344972 32345098 -88912432 + B1_Mus1 SINE Alu 1 142 -6 6 831 180 163 0 0 chr12 32345124 32345167 -88912363 + (CCCCAA)n Simple_repeat Simple_repeat 3 45 0 6 831 312 315 199 5 chr12 32345194 32345395 -88912135 + MIR SINE MIR 3 242 -20 6 831 194 287 169 22 chr12 32346303 32346392 -88911138 - MIRm SINE MIR -11 265 164 6 831 192 97 0 0 chr12 32346657 32346688 -88910842 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 6 831 1058 133 55 11 chr12 32347300 32347482 -88910048 + B2_Mm1t SINE B2 1 190 -3 6 831 1268 34 0 0 chr12 32347487 32347634 -88909896 + B1_Mm SINE Alu 1 147 0 6 831 1640 169 65 15 chr12 32347695 32348019 -88909511 - ORR1D1 LTR MaLR -10 364 25 6 831 28 0 0 0 chr12 32348075 32348103 -88909427 + AT_rich Low_complexity Low_complexity 1 28 0 6 831 4213 184 54 51 chr12 32348188 32349091 -88908439 - RMER13B LTR ERVK -2 906 1 6 831 1521 131 72 69 chr12 32349166 32349501 -88908029 + RMER6B LTR ERVK 1 336 -125 6 831 394 211 26 13 chr12 32349747 32349824 -88907706 - ID4_ SINE ID 0 83 6 6 831 275 164 66 0 chr12 32349836 32349897 -88907633 + MLT1A0 LTR MaLR 34 98 -267 6 831 421 231 67 17 chr12 32349990 32350109 -88907421 + MLT1A0 LTR MaLR 241 365 0 6 831 261 0 0 0 chr12 32350196 32350225 -88907305 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 831 258 273 80 10 chr12 32350575 32350675 -88906855 + MIR SINE MIR 90 196 -66 6 831 1364 241 66 30 chr12 32350957 32351350 -88906180 - MTD LTR MaLR -8 411 5 6 831 807 158 15 0 chr12 32351787 32351920 -88905610 - B1_Mur2 SINE Alu -5 144 10 6 831 413 259 31 131 chr12 32351788 32351948 -88905582 - B4 SINE B4 -72 220 77 6 831 2070 202 68 15 chr12 32352077 32352545 -88904985 - Lx5 LINE L1 0 7050 6558 6 831 1839 159 97 0 chr12 32352522 32352873 -88904657 + Lx3C LINE L1 6460 6844 -132 6 831 378 333 179 38 chr12 32353091 32353431 -88904099 - L2a LINE L2 -83 3343 2956 6 831 204 179 0 0 chr12 32354739 32354778 -88902752 + (TATG)n Simple_repeat Simple_repeat 4 42 0 6 831 855 278 68 21 chr12 32354845 32355124 -88902406 - B4A SINE B4 0 292 1 6 831 5007 218 56 88 chr12 32355267 32356240 -88901290 - Lx5 LINE L1 -45 7005 6093 6 831 717 97 0 0 chr12 32356240 32356343 -88901187 + (TCCC)n Simple_repeat Simple_repeat 3 105 0 6 831 13471 169 25 23 chr12 32356343 32359355 -88898175 - Lx5 LINE L1 -958 6092 3047 6 831 1588 143 4 0 chr12 32359691 32359928 -88897602 - RLTR28B LTR ERVL 0 481 244 6 831 2796 144 11 4 chr12 32359923 32360384 -88897146 - RLTR28 LTR ERVL -60 464 1 6 831 195 69 0 0 chr12 32361876 32361905 -88895625 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 831 977 69 76 0 chr12 32361905 32362036 -88895494 - B1_Mus1 SINE Alu -6 142 2 6 831 21 0 0 0 chr12 32362114 32362135 -88895395 + AT_rich Low_complexity Low_complexity 1 21 0 6 831 24 53 0 0 chr12 32362195 32362233 -88895297 + AT_rich Low_complexity Low_complexity 1 38 0 6 831 744 257 134 0 chr12 32362264 32362451 -88895079 - ID_B1 SINE B4 -1 223 12 6 831 3859 193 78 18 chr12 32362672 32362805 -88894725 - Lx9 LINE L1 -2 7642 7477 6 831 282 56 0 0 chr12 32362805 32362841 -88894689 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 831 3859 193 78 18 chr12 32362841 32363657 -88893873 - Lx9 LINE L1 -168 7476 6636 6 831 265 310 69 72 chr12 32363657 32363829 -88893701 + MLT1G LTR MaLR 128 303 -252 6 831 241 176 216 0 chr12 32363939 32364013 -88893517 + MLT1G LTR MaLR 396 485 -4 6 831 817 252 131 35 chr12 32364109 32364422 -88893108 - RLTR15 LTR ERVK -16 343 1 6 831 487 281 212 33 chr12 32364468 32364979 -88892551 - Lx6 LINE L1 -31 7429 6455 6 831 516 267 166 31 chr12 32365000 32365290 -88892240 - Lx6 LINE L1 -1232 6228 5900 6 831 859 147 147 0 chr12 32365339 32365509 -88892021 - B2_Mm2 SINE B2 0 195 1 6 831 1044 72 7 0 chr12 32365533 32365671 -88891859 - B1_Mus1 SINE Alu 0 148 10 6 831 3257 162 2 8 chr12 32365679 32366276 -88891254 - Lx6 LINE L1 -43 5837 5245 6 831 267 308 52 65 chr12 32366816 32366969 -88890561 + L1MC5 LINE L1 6673 6823 -1138 6 831 247 319 47 97 chr12 32368641 32368775 -88888755 + B1F1 SINE Alu 22 150 0 6 831 706 216 7 7 chr12 32368920 32369055 -88888475 + B1_Mur1 SINE Alu 1 135 -14 6 831 538 228 162 50 chr12 32369349 32369608 -88887922 - B4A SINE B4 -4 288 1 6 831 250 312 52 59 chr12 32370111 32370264 -88887266 - MER5B DNA MER1_type -21 157 6 6 831 477 272 127 30 chr12 32370980 32371279 -88886251 - L1MD2 LINE L1 -359 6000 5673 6 831 241 359 47 0 chr12 32371472 32371578 -88885952 + Tigger12A DNA MER2_type 155 265 -526 7 831 857 110 312 6 chr12 32371744 32371917 -88885613 + URR1A DNA MER1_type 1 226 0 7 831 306 0 0 0 chr12 32372095 32372129 -88885401 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 7 831 827 91 25 0 chr12 32372129 32372250 -88885280 - B1_Mus1 SINE Alu -9 139 16 7 831 27 29 0 0 chr12 32372267 32372301 -88885229 + AT_rich Low_complexity Low_complexity 1 34 0 7 831 297 197 0 0 chr12 32372342 32372408 -88885122 + (TA)n Simple_repeat Simple_repeat 1 66 0 7 831 279 218 23 0 chr12 32372479 32372566 -88884964 + Lx9 LINE L1 7555 7643 -1 7 831 473 262 122 41 chr12 32372763 32373057 -88884473 - Lx7 LINE L1 -329 7367 7050 7 831 2792 187 93 99 chr12 32373496 32374388 -88883142 - Lx7 LINE L1 -5 7691 6805 7 103 2129 171 60 15 chr12 32374561 32374958 -88882572 - MTC LTR MaLR 0 421 7 7 832 23 33 0 0 chr12 32375220 32375250 -88882280 + AT_rich Low_complexity Low_complexity 1 30 0 7 832 265 381 0 0 chr12 32376114 32376198 -88881332 + L4 LINE RTE 867 950 -1079 7 832 2839 44 6 0 chr12 32376518 32376862 -88880668 - ORR1A1 LTR MaLR 0 346 1 7 832 313 275 176 0 chr12 32377118 32377249 -88880281 - L1M2 LINE L1 -1274 4869 4716 7 832 423 314 118 65 chr12 32378213 32378553 -88878977 - MLT1A1 LTR MaLR 0 408 51 7 832 648 316 35 78 chr12 32378647 32378966 -88878564 + MLT1D LTR MaLR 15 319 -186 7 832 866 196 113 31 chr12 32379286 32379481 -88878049 - B3 SINE B2 -5 211 1 7 832 874 319 35 14 chr12 32379527 32379810 -88877720 + B4A SINE B4 3 291 -1 7 832 1195 117 93 37 chr12 32379904 32379944 -88877586 + URR1A DNA MER1_type 1 38 -188 7 832 2508 147 32 10 chr12 32379944 32380355 -88877175 - MTC LTR MaLR 0 421 2 7 832 1195 117 93 37 chr12 32380355 32380528 -88877002 + URR1A DNA MER1_type 39 226 0 7 832 1514 42 0 59 chr12 32380793 32380995 -88876535 + B2_Mm1t SINE B2 2 191 -2 7 832 1249 41 0 0 chr12 32381367 32381514 -88876016 - B1_Mm SINE Alu 0 147 1 7 832 391 282 94 0 chr12 32381680 32381797 -88875733 + RSINE1 SINE B4 1 128 -37 7 832 3373 136 41 21 chr12 32381915 32382679 -88874851 - RLTR13D2 LTR ERVK 0 1023 27 7 832 7450 102 49 1 chr12 32382865 32384073 -88873457 - Lx3C LINE L1 -2 6974 5709 7 832 1113 119 0 0 chr12 32384061 32384229 -88873301 + Lx3C LINE L1 5529 5696 -190 7 832 273 173 61 12 chr12 32384238 32384320 -88873210 + (TTTA)n Simple_repeat Simple_repeat 3 88 0 7 832 213 243 42 14 chr12 32384873 32384944 -88872586 + T-rich Low_complexity Low_complexity 2 74 0 7 832 265 305 112 19 chr12 32384944 32385051 -88872479 - PB1D10 SINE Alu 0 117 1 7 832 206 62 31 0 chr12 32385248 32385280 -88872250 + (GGGAGA)n Simple_repeat Simple_repeat 3 35 0 7 832 584 254 157 0 chr12 32387213 32387248 -88870282 - B3 SINE B2 0 216 174 7 832 492 72 0 0 chr12 32387248 32387317 -88870213 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 832 584 254 157 0 chr12 32387317 32387466 -88870064 - B3 SINE B2 -43 173 4 7 832 363 118 26 13 chr12 32387645 32387722 -88869808 + (TA)n Simple_repeat Simple_repeat 1 78 0 7 832 250 276 0 0 chr12 32387763 32387821 -88869709 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 832 264 278 34 85 chr12 32387849 32387967 -88869563 - PB1D10 SINE Alu 0 117 6 7 832 1164 61 0 13 chr12 32388129 32388279 -88869251 + B1_Mus1 SINE Alu 1 148 0 7 832 242 333 25 33 chr12 32388412 32388533 -88868997 - PB1 SINE Alu -7 120 1 7 832 243 0 0 0 chr12 32388659 32388686 -88868844 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 832 629 269 40 17 chr12 32389478 32389652 -88867878 - B3A SINE B2 -20 178 1 7 832 473 261 8 25 chr12 32390118 32390236 -88867294 + PB1D9 SINE Alu 3 118 -2 7 832 685 262 54 0 chr12 32390398 32390566 -88866964 - ID_B1 SINE B4 0 224 48 7 832 432 0 0 0 chr12 32390623 32390671 -88866859 + (CATA)n Simple_repeat Simple_repeat 2 49 0 7 832 288 0 0 0 chr12 32390671 32390703 -88866827 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 832 404 263 94 26 chr12 32390815 32390932 -88866598 + B1_Mur1 SINE Alu 25 149 0 7 832 1082 50 7 0 chr12 32391333 32391474 -88866056 + (TCTCC)n Simple_repeat Simple_repeat 1 142 0 7 832 26 30 0 0 chr12 32399674 32399707 -88857823 + AT_rich Low_complexity Low_complexity 1 33 0 7 832 498 322 8 0 chr12 32399816 32399934 -88857596 - RSINE1 SINE B4 -2 163 45 7 832 21 0 0 0 chr12 32400137 32400158 -88857372 + AT_rich Low_complexity Low_complexity 1 21 0 7 832 851 190 0 0 chr12 32401145 32401287 -88856243 + B1_Mus2 SINE Alu 1 142 -5 7 832 34 24 0 0 chr12 32401676 32401717 -88855813 + AT_rich Low_complexity Low_complexity 1 41 0 7 832 451 341 37 69 chr12 32401985 32402178 -88855352 - L1MC LINE L1 -1651 4495 4309 7 832 1869 151 47 36 chr12 32402178 32402541 -88854989 + ORR1B2 LTR MaLR 1 367 0 7 832 451 341 37 69 chr12 32402541 32402725 -88854805 - L1MC LINE L1 -1838 4308 4131 7 832 693 315 101 30 chr12 32402775 32403168 -88854362 + LTR40c LTR ERVL 44 448 -14 7 832 1389 73 0 4 chr12 32403443 32403715 -88853815 + (GGAA)n Simple_repeat Simple_repeat 1 271 0 7 832 241 47 23 23 chr12 32404511 32404555 -88852975 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 7 832 352 324 97 29 chr12 32405153 32405328 -88852202 + HERVL40-int LTR ERVL 2881 3067 -2463 7 832 704 265 128 16 chr12 32406538 32406906 -88850624 - L1M5 LINE L1 -2195 3951 3543 7 832 280 300 50 6 chr12 32407276 32407437 -88850093 - L1M5 LINE L1 -3221 2925 2758 7 832 729 186 13 40 chr12 32407452 32407603 -88849927 + B1_Mur2 SINE Alu 2 148 -1 7 832 301 301 112 107 chr12 32407662 32407859 -88849671 - L1MEf LINE L1 -3515 2631 2434 7 832 694 303 172 70 chr12 32407957 32408252 -88849278 - L1MEf LINE L1 -3992 2250 1941 7 832 1222 41 0 0 chr12 32408252 32408398 -88849132 + B1_Mus2 SINE Alu 2 147 0 7 832 694 303 172 70 chr12 32408398 32408813 -88848717 - L1MEf LINE L1 -4302 1940 1468 7 832 1284 14 0 0 chr12 32409201 32409348 -88848182 + B1_Mm SINE Alu 1 147 0 7 832 242 173 19 19 chr12 32409405 32409458 -88848072 + CT-rich Low_complexity Low_complexity 1 53 0 7 832 640 248 39 7 chr12 32409481 32409635 -88847895 - B3 SINE B2 -10 206 48 7 832 782 310 26 0 chr12 32409646 32409878 -88847652 - B4A SINE B4 -53 239 2 7 832 216 97 0 0 chr12 32410098 32410129 -88847401 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 7 832 936 149 15 60 chr12 32410769 32410987 -88846543 - RMER10B LTR ERVL 0 398 194 7 832 1023 60 37 0 chr12 32410987 32411121 -88846409 + B1_Mus2 SINE Alu 1 139 -8 7 832 301 220 58 43 chr12 32411121 32411198 -88846332 - RMER10B LTR ERVL -180 218 144 7 832 1821 141 41 163 chr12 32411435 32411919 -88845611 - RLTR23 LTR ERV1 0 430 6 7 832 1968 169 89 0 chr12 32411921 32412270 -88845260 - MTC LTR MaLR -41 380 1 7 832 600 269 47 7 chr12 32412271 32412421 -88845109 - Lx8 LINE L1 -146 7327 7172 7 832 1389 214 116 30 chr12 32412426 32412806 -88844724 - RMER15 LTR ERVL 0 575 137 7 832 307 203 203 0 chr12 32413157 32413226 -88844304 - Lx8 LINE L1 -315 7158 7076 7 832 245 151 56 19 chr12 32413391 32413445 -88844085 - MER58C DNA MER1_type -12 203 148 7 832 450 310 176 31 chr12 32413497 32413856 -88843674 + Lx8 LINE L1 7046 7456 -17 7 832 26 30 0 0 chr12 32413944 32413977 -88843553 + AT_rich Low_complexity Low_complexity 1 33 0 7 832 486 0 0 0 chr12 32414023 32414077 -88843453 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 832 487 233 57 57 chr12 32415542 32415683 -88841847 - B1F2 SINE Alu 0 149 9 7 832 479 231 50 50 chr12 32415758 32415899 -88841631 - MLT1A1 LTR MaLR 0 408 268 7 832 291 175 0 0 chr12 32415939 32415996 -88841534 + CT-rich Low_complexity Low_complexity 2 58 0 7 832 303 49 0 0 chr12 32416245 32416286 -88841244 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 832 372 312 103 52 chr12 32416959 32417172 -88840358 + Tigger12A DNA MER2_type 23 246 -545 7 832 21 57 0 0 chr12 32418776 32418811 -88838719 + AT_rich Low_complexity Low_complexity 1 35 0 7 832 277 398 29 15 chr12 32419202 32419406 -88838124 - Lx7 LINE L1 -466 7230 7024 7 832 1206 301 136 43 chr12 32419416 32419974 -88837556 + MLT1E2 LTR MaLR 1 610 -17 7 832 314 250 112 11 chr12 32419987 32420076 -88837454 - MLT1F LTR MaLR -94 454 357 7 832 211 280 20 0 chr12 32420492 32420542 -88836988 - ID4_ SINE ID -24 59 9 7 832 198 0 0 0 chr12 32420554 32420576 -88836954 + (T)n Simple_repeat Simple_repeat 1 22 0 7 832 570 165 149 0 chr12 32420719 32420840 -88836690 - B1_Mur4 SINE Alu -11 139 1 7 832 1609 267 146 27 chr12 32421262 32421791 -88835739 + L1MA6 LINE L1 5205 5814 -486 7 832 733 214 7 7 chr12 32421791 32421937 -88835593 - B1_Mur3 SINE Alu -1 148 3 7 832 1609 257 132 18 chr12 32421937 32422363 -88835167 + L1MA6 LINE L1 5815 6299 -1 7 832 29 47 0 0 chr12 32422658 32422701 -88834829 + AT_rich Low_complexity Low_complexity 1 43 0 7 832 992 61 83 0 chr12 32422799 32422931 -88834599 - B1_Mus1 SINE Alu -1 147 5 7 832 475 281 113 60 chr12 32424252 32424693 -88832837 - L1MB8 LINE L1 -2 6176 5698 7 832 302 209 11 11 chr12 32424868 32424960 -88832570 - L1MB8 LINE L1 -1651 4489 4398 7 832 249 273 100 22 chr12 32424979 32425069 -88832461 - B1F SINE Alu 0 149 53 7 832 349 209 9 0 chr12 32425103 32425208 -88832322 - L1MB8 LINE L1 -1738 4408 4303 7 832 687 140 58 22 chr12 32425235 32425374 -88832156 - Lx3A LINE L1 -3 6978 6835 7 832 18785 81 21 23 chr12 32425374 32426092 -88831438 - L1_Mur1 LINE L1 -1847 4039 3315 7 832 213 39 0 0 chr12 32426092 32426118 -88831412 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 832 18785 93 63 23 chr12 32426118 32429258 -88828272 - L1_Mur1 LINE L1 -2572 3314 48 7 832 1237 127 16 5 chr12 32429262 32429452 -88828078 - B2_Mm2 SINE B2 -3 192 1 7 832 2823 192 65 20 chr12 32429479 32430110 -88827420 + RMER1A Other Other 296 829 -201 7 832 266 181 66 53 chr12 32430116 32430192 -88827338 + L1M4 LINE L1 4762 4838 -1308 7 832 226 224 0 58 chr12 32430204 32430256 -88827274 - B1_Mus2 SINE Alu -98 49 1 7 832 678 194 186 36 chr12 32430296 32430489 -88827041 - ID_B1 SINE B4 0 224 3 7 832 484 242 132 112 chr12 32430497 32430748 -88826782 + L1M4 LINE L1 4896 5165 -981 7 832 1074 61 0 75 chr12 32430748 32430907 -88826623 + B1_Mus1 SINE Alu 2 148 0 8 832 509 238 88 46 chr12 32430907 32431177 -88826353 + L1M4 LINE L1 5166 5429 -745 7 832 693 253 116 20 chr12 32431855 32432105 -88825425 - MLT1C LTR MaLR -34 433 160 8 832 225 0 0 0 chr12 32432158 32432183 -88825347 + (A)n Simple_repeat Simple_repeat 1 25 0 8 832 336 301 42 71 chr12 32432567 32432735 -88824795 - MLT1C LTR MaLR -227 163 1 8 832 1153 76 0 0 chr12 32433672 32433817 -88823713 + B1_Mus1 SINE Alu 4 148 0 8 832 264 59 0 0 chr12 32433817 32433851 -88823679 + (GA)n Simple_repeat Simple_repeat 2 35 0 8 832 612 125 0 0 chr12 32433870 32433966 -88823564 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 8 832 249 231 19 0 chr12 32434100 32434152 -88823378 + GA-rich Low_complexity Low_complexity 2 54 0 8 832 846 142 222 0 chr12 32434322 32434498 -88823032 - B3 SINE B2 0 216 2 8 832 371 284 210 21 chr12 32434837 32435181 -88822349 - L1M2 LINE L1 -190 5657 5278 8 832 391 179 0 0 chr12 32435230 32435314 -88822216 - L1M3 LINE L1 -1651 4489 4406 8 832 1535 27 0 16 chr12 32435319 32435510 -88822020 - B2_Mm1a SINE B2 -5 188 1 8 832 1563 269 85 51 chr12 32435590 32435920 -88821610 - L1M2 LINE L1 -944 5199 4853 8 832 237 119 0 0 chr12 32435920 32435962 -88821568 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 832 1563 269 85 51 chr12 32435962 32436521 -88821009 - L1M2 LINE L1 -1291 4852 4280 8 832 1387 50 61 11 chr12 32436603 32436766 -88820764 + B2_Mm1t SINE B2 2 175 -18 8 832 213 39 0 0 chr12 32436766 32436792 -88820738 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 832 1387 50 61 11 chr12 32436792 32436809 -88820721 + B2_Mm1t SINE B2 176 191 -2 8 832 431 309 170 50 chr12 32437140 32437440 -88820090 + MLT1A0 LTR MaLR 18 353 -12 8 832 250 330 66 0 chr12 32437930 32438036 -88819494 + PB1 SINE Alu 1 113 -14 8 832 334 262 33 60 chr12 32438343 32438493 -88819037 - L1MA10 LINE L1 -7 6327 6182 8 832 375 311 61 102 chr12 32439960 32440254 -88817276 - B4 SINE B4 -10 282 1 8 832 194 313 11 46 chr12 32440345 32440432 -88817098 - MIRb SINE MIR -140 128 45 8 832 279 0 0 0 chr12 32440448 32440479 -88817051 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 832 216 304 179 0 chr12 32440655 32440711 -88816819 + ID4_ SINE ID 6 71 -12 8 832 2083 128 75 65 chr12 32440771 32441173 -88816357 + MTB_Mm LTR MaLR 2 407 0 8 832 256 340 18 27 chr12 32441277 32441389 -88816141 + Tigger12c DNA MER2_type 86 196 -538 8 832 229 265 68 68 chr12 32443428 32443501 -88814029 + ID2 SINE ID 2 74 -9 8 832 607 184 70 23 chr12 32443843 32443971 -88813559 + B1_Mus2 SINE Alu 3 136 -11 8 832 595 252 14 43 chr12 32444296 32444437 -88813093 + B1_Mur1 SINE Alu 6 142 -7 8 832 192 179 0 0 chr12 32444652 32444691 -88812839 + CT-rich Low_complexity Low_complexity 3 41 0 8 832 339 282 36 9 chr12 32444703 32444814 -88812716 - PB1D10 SINE Alu -1 116 3 8 832 552 293 122 18 chr12 32444886 32445115 -88812415 - B4 SINE B4 -30 262 10 8 832 647 142 0 0 chr12 32445471 32445577 -88811953 + B1_Mur3 SINE Alu 37 142 -7 8 832 492 18 0 0 chr12 32446074 32446131 -88811399 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 832 209 161 0 0 chr12 32446899 32446930 -88810600 + C-rich Low_complexity Low_complexity 1 31 0 8 832 931 70 125 0 chr12 32446933 32447061 -88810469 - B1_Mus2 SINE Alu -2 145 2 8 832 773 314 3 7 chr12 32447064 32447365 -88810165 - Lx9 LINE L1 -289 7355 7056 8 832 459 289 66 0 chr12 32447479 32447600 -88809930 + B1F1 SINE Alu 21 149 0 8 832 349 239 136 0 chr12 32447657 32447745 -88809785 - PB1D10 SINE Alu 0 117 18 8 832 633 185 8 0 chr12 32447920 32448039 -88809491 + ORR1C2 LTR MaLR 265 384 0 8 832 289 305 192 0 chr12 32448266 32448443 -88809087 + MER2 DNA MER2_type 81 291 -54 8 832 1157 68 7 0 chr12 32448469 32448615 -88808915 - B1_Mus2 SINE Alu 0 147 1 8 832 340 20 0 39 chr12 32448715 32448766 -88808764 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 832 1134 65 0 0 chr12 32448766 32448905 -88808625 - B1_Mus1 SINE Alu -9 139 1 8 832 24 67 0 0 chr12 32449027 32449072 -88808458 + AT_rich Low_complexity Low_complexity 1 45 0 8 832 379 112 27 161 chr12 32449106 32449255 -88808275 + Lx3_Mus LINE L1 6881 7009 0 8 832 22 35 0 0 chr12 32449293 32449322 -88808208 + AT_rich Low_complexity Low_complexity 1 29 0 8 832 288 0 0 0 chr12 32449324 32449356 -88808174 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 8 832 353 274 78 0 chr12 32449392 32449494 -88808036 + PB1D10 SINE Alu 8 117 0 8 832 289 349 113 8 chr12 32450296 32450429 -88807101 - MLT1A1 LTR MaLR -20 388 242 8 832 1059 195 60 0 chr12 32450850 32451050 -88806480 - B3 SINE B2 -4 212 1 8 832 1656 21 0 0 chr12 32452502 32452688 -88804842 + B2_Mm1t SINE B2 2 187 -6 8 832 1677 270 67 60 chr12 32452691 32453585 -88803945 + L1_Mur3 LINE L1 3700 4599 -1281 8 832 647 304 88 15 chr12 32453804 32454339 -88803191 + L1MA6 LINE L1 5354 5927 -373 8 832 1150 204 134 17 chr12 32454463 32454762 -88802768 + ORR1D1 LTR MaLR 41 374 0 8 832 1219 100 33 0 chr12 32454917 32455097 -88802433 + B2_Mm1t SINE B2 2 187 -6 8 832 1142 69 0 7 chr12 32455115 32455251 -88802279 + B1_Mus2 SINE Alu 2 137 -10 8 832 216 0 0 0 chr12 32455251 32455275 -88802255 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 832 953 76 0 51 chr12 32455315 32455552 -88801978 + (GGGAA)n Simple_repeat Simple_repeat 1 224 0 8 832 21 36 0 0 chr12 32455955 32455983 -88801547 + AT_rich Low_complexity Low_complexity 1 28 0 8 832 1283 223 59 90 chr12 32455995 32456483 -88801047 + MT2B LTR ERVL 1 601 0 8 832 452 321 76 23 chr12 32456484 32456656 -88800874 - B3A SINE B2 -16 182 2 8 832 964 218 39 5 chr12 32456673 32456880 -88800650 - B3 SINE B2 0 216 3 8 832 274 362 7 42 chr12 32457394 32457538 -88799992 + Cheshire DNA MER1_type 182 320 -2100 8 832 495 321 6 17 chr12 32457641 32457819 -88799711 - B3A SINE B2 -15 201 29 8 832 629 184 0 9 chr12 32457933 32458048 -88799482 - RLTR14 LTR ERV1 -262 120 7 8 832 357 353 94 29 chr12 32459427 32459672 -88797858 - L1M5 LINE L1 -305 5819 5559 8 832 276 248 225 25 chr12 32459914 32460034 -88797496 - B1F1 SINE Alu -5 144 1 8 832 1162 36 7 0 chr12 32460088 32460227 -88797303 + B1_Mus2 SINE Alu 1 140 -7 8 832 899 262 71 4 chr12 32460283 32460551 -88796979 - B4A SINE B4 -4 288 3 8 832 608 270 70 37 chr12 32460566 32461021 -88796509 - L1M2 LINE L1 -722 5578 5099 8 832 426 229 165 57 chr12 32461189 32461327 -88796203 - L1M2 LINE L1 -1355 4788 4642 8 832 1045 108 36 46 chr12 32461327 32461522 -88796008 - B2_Mm2 SINE B2 -1 194 2 8 832 426 229 165 57 chr12 32461522 32461680 -88795850 - L1M2 LINE L1 -1502 4641 4460 8 832 1828 178 70 20 chr12 32461680 32462221 -88795309 + RLTR40 LTR ERVK 1 598 -219 8 832 468 0 0 0 chr12 32462221 32462273 -88795257 + (TC)n Simple_repeat Simple_repeat 2 53 0 8 832 706 217 7 20 chr12 32462280 32462426 -88795104 + RLTR40 LTR ERVK 660 803 -14 8 832 324 237 88 16 chr12 32462438 32462631 -88794899 - L1M2 LINE L1 -1678 4465 4259 8 832 1067 171 119 75 chr12 32462858 32463136 -88794394 - Lx3C LINE L1 -210 6766 6477 8 832 589 195 41 56 chr12 32463142 32463338 -88794192 - RMER17C LTR ERVK -93 317 125 8 832 507 225 153 27 chr12 32463502 32463685 -88793845 - MER2 DNA MER2_type -121 224 19 8 832 350 257 179 28 chr12 32463953 32464349 -88793181 + L1M3 LINE L1 4927 5391 -752 8 832 1132 48 0 45 chr12 32464359 32464513 -88793017 + B1_Mm SINE Alu 1 147 0 8 832 306 125 0 0 chr12 32464513 32464561 -88792969 + (A)n Simple_repeat Simple_repeat 1 48 0 8 832 589 258 107 21 chr12 32464680 32464914 -88792616 - L1MB3 LINE L1 -148 6035 5782 8 832 332 362 143 28 chr12 32464992 32465166 -88792364 - MLT1C LTR MaLR -17 450 251 8 832 569 275 15 45 chr12 32465166 32465368 -88792162 - B3A SINE B2 0 198 3 8 832 332 362 143 28 chr12 32465368 32465409 -88792121 - MLT1C LTR MaLR -217 250 210 8 832 387 0 0 0 chr12 32465463 32465506 -88792024 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 832 366 23 0 0 chr12 32465506 32465548 -88791982 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 832 473 307 82 101 chr12 32465549 32465817 -88791713 - B4 SINE B4 -28 264 2 8 832 333 0 0 0 chr12 32465827 32465864 -88791666 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 832 292 221 156 0 chr12 32465907 32465984 -88791546 - MLT1C LTR MaLR -320 147 59 8 832 511 314 27 60 chr12 32466098 32466281 -88791249 - MLT1A LTR MaLR -26 348 172 8 832 1387 299 130 30 chr12 32466449 32467048 -88790482 - MER21B LTR ERV1 -82 781 123 8 832 618 14 0 0 chr12 32467141 32467212 -88790318 + (TCCA)n Simple_repeat Simple_repeat 4 74 0 8 832 546 63 0 0 chr12 32467235 32467314 -88790216 + (CAGT)n Simple_repeat Simple_repeat 3 81 0 8 832 738 174 0 0 chr12 32467316 32467454 -88790076 + (TCCA)n Simple_repeat Simple_repeat 3 140 0 8 832 22 88 0 0 chr12 32467525 32467582 -88789948 + AT_rich Low_complexity Low_complexity 1 57 0 8 832 603 259 0 70 chr12 32467593 32467751 -88789779 + B1_Mur2 SINE Alu 3 149 0 8 832 299 297 25 8 chr12 32467754 32467873 -88789657 - PB1 SINE Alu -6 121 1 8 832 258 81 0 0 chr12 32468093 32468130 -88789400 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 832 1259 148 174 38 chr12 32469730 32470018 -88787512 - ORR1B2 LTR MaLR 0 367 41 8 832 259 275 53 32 chr12 32470020 32470114 -88787416 - ORR1B2 LTR MaLR -271 96 1 8 832 393 266 43 0 chr12 32470558 32470661 -88786869 + PB1D7 SINE Alu 6 112 -8 8 832 228 277 61 15 chr12 32470901 32470967 -88786563 - L2a LINE L2 -38 3388 3320 8 832 287 416 0 0 chr12 32471009 32471122 -88786408 - MIRb SINE MIR -148 120 8 8 832 230 306 66 20 chr12 32471260 32471373 -88786157 - MIR SINE MIR -108 160 42 8 832 431 305 201 20 chr12 32471397 32471799 -88785731 + L1ME3A LINE L1 3172 3646 -2500 8 832 1316 64 26 26 chr12 32471891 32472084 -88785446 - B2_Mm2 SINE B2 -1 194 2 9 832 457 295 178 11 chr12 32472196 32472559 -88784971 + L1ME3A LINE L1 4070 4499 -1647 8 832 1231 55 0 0 chr12 32473262 32473408 -88784122 - B1_Mm SINE Alu 0 147 2 9 832 424 314 80 13 chr12 32473542 32473768 -88783762 + Lx8 LINE L1 7173 7413 -60 9 832 22 88 0 0 chr12 32473893 32473950 -88783580 + AT_rich Low_complexity Low_complexity 1 57 0 9 832 1490 54 0 11 chr12 32474181 32474367 -88783163 + B2_Mm1t SINE B2 2 185 -8 9 832 457 342 59 11 chr12 32474491 32474849 -88782681 + L1ME3A LINE L1 5672 6046 -127 8 832 241 359 41 76 chr12 32474931 32475103 -88782427 - B4A SINE B4 0 292 127 9 832 207 188 0 0 chr12 32475141 32475189 -88782341 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 9 832 252 100 0 0 chr12 32475359 32475399 -88782131 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 832 230 116 0 23 chr12 32476430 32476474 -88781056 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 9 832 1259 35 134 12 chr12 32476768 32476940 -88780590 - B2_Mm1a SINE B2 0 193 1 9 832 223 268 23 68 chr12 32477267 32477355 -88780175 - L3b LINE CR1 -216 266 183 9 832 234 236 0 52 chr12 32477845 32477903 -88779627 + B1F SINE Alu 93 147 -2 9 832 2142 140 55 16 chr12 32478023 32478386 -88779144 + MTC LTR MaLR 1 377 -44 9 832 400 290 39 39 chr12 32478509 32478638 -88778892 - RSINE1 SINE B4 -34 131 3 9 832 537 275 6 75 chr12 32479043 32479216 -88778314 - RSINE1 SINE B4 -2 163 3 9 832 23 86 0 0 chr12 32479238 32479296 -88778234 + AT_rich Low_complexity Low_complexity 1 58 0 9 832 904 249 128 37 chr12 32479312 32479663 -88777867 - RMER1C Other Other -151 1191 809 9 832 22 0 0 0 chr12 32480450 32480472 -88777058 + AT_rich Low_complexity Low_complexity 1 22 0 9 832 211 62 14 99 chr12 32480744 32480800 -88776730 + T-rich Low_complexity Low_complexity 15 65 0 9 832 873 55 158 45 chr12 32480800 32480933 -88776597 - B1_Mus1 SINE Alu 0 148 1 9 832 211 62 14 99 chr12 32480933 32480947 -88776583 + T-rich Low_complexity Low_complexity 1 14 0 9 832 465 297 31 43 chr12 32481136 32481298 -88776232 + RSINE1 SINE B4 4 163 -2 9 832 1561 210 111 3 chr12 32481355 32481723 -88775807 + MTD LTR MaLR 12 419 0 9 832 283 280 108 39 chr12 32482103 32482233 -88775297 - MTEa LTR MaLR -106 253 115 9 832 292 306 8 92 chr12 32482298 32482417 -88775113 - MTEa LTR MaLR -269 110 2 9 832 225 183 0 0 chr12 32483304 32483364 -88774166 + T-rich Low_complexity Low_complexity 1 60 0 9 832 1241 28 0 0 chr12 32483561 32483702 -88773828 + B1_Mm SINE Alu 1 141 -6 9 832 214 174 0 0 chr12 32483705 32483751 -88773779 + A-rich Low_complexity Low_complexity 1 46 0 9 832 304 299 98 79 chr12 32484026 32484240 -88773290 - ORR1E LTR MaLR -120 239 22 9 832 468 291 117 15 chr12 32484241 32484447 -88773083 - MTE-int LTR MaLR -40 1540 1314 9 832 21 0 0 0 chr12 32484609 32484630 -88772900 + AT_rich Low_complexity Low_complexity 1 21 0 9 832 269 287 25 57 chr12 32484652 32484774 -88772756 - B4A SINE B4 -174 118 1 9 832 423 265 190 107 chr12 32485028 32485137 -88772393 - RMER10A LTR ERVL -49 393 279 9 832 474 18 0 0 chr12 32485137 32485192 -88772338 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 9 832 423 265 190 107 chr12 32485192 32485445 -88772085 - RMER10A LTR ERVL -164 278 1 9 832 1608 37 11 0 chr12 32485540 32485731 -88771799 + B2_Mm1t SINE B2 1 193 0 9 832 243 0 0 0 chr12 32486126 32486153 -88771377 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 832 3521 257 52 100 chr12 32487996 32488491 -88769039 - RLTR22_Mur LTR ERVK -359 1489 1021 9 832 821 60 9 0 chr12 32488491 32488607 -88768923 + (TTCTC)n Simple_repeat Simple_repeat 3 119 0 9 832 3521 257 52 100 chr12 32488607 32489675 -88767855 - RLTR22_Mur LTR ERVK -828 1020 1 9 832 1163 49 0 7 chr12 32490735 32490878 -88766652 - B1_Mm SINE Alu -5 142 1 9 832 758 180 106 25 chr12 32491399 32491598 -88765932 + B3 SINE B2 1 215 -1 9 832 231 61 0 0 chr12 32492687 32492720 -88764810 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 9 832 1164 82 0 0 chr12 32492725 32492871 -88764659 - B1_Mm SINE Alu 0 147 2 9 832 522 325 12 18 chr12 32492940 32493103 -88764427 + RSINE1 SINE B4 2 163 -2 9 832 180 152 0 0 chr12 32493117 32493150 -88764380 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 9 832 363 231 50 43 chr12 32493433 32493573 -88763957 + L1M4 LINE L1 3984 4124 -2022 9 832 2065 159 27 19 chr12 32493790 32494161 -88763369 - ORR1C1 LTR MaLR -4 374 1 9 832 369 329 99 36 chr12 32494230 32494482 -88763048 + L1MC4 LINE L1 7775 8042 0 9 832 343 309 151 68 chr12 32494481 32494891 -88762639 + L1M5 LINE L1 3328 3771 -2375 9 832 2640 185 35 39 chr12 32495851 32495958 -88761572 - MT2A LTR ERVL 0 533 425 9 832 1299 51 84 6 chr12 32495958 32496137 -88761393 - B2_Mm1a SINE B2 0 193 1 9 832 2640 185 35 39 chr12 32496137 32496564 -88760966 - MT2A LTR ERVL -109 424 1 9 832 1392 186 75 104 chr12 32496572 32497023 -88760507 - MERVL_2A-int LTR ERVL -5 5756 5319 9 832 203 56 83 0 chr12 32497024 32497060 -88760470 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 9 832 857 167 13 0 chr12 32497061 32497211 -88760319 - MERVL_2A-int LTR ERVL -440 5321 5170 9 832 189 121 0 0 chr12 32497218 32497251 -88760279 + (T)n Simple_repeat Simple_repeat 1 33 0 9 832 2506 237 40 16 chr12 32497285 32497954 -88759576 - MERVL_2A-int LTR ERVL -599 5162 4478 9 832 41 0 0 0 chr12 32498121 32498162 -88759368 + AT_rich Low_complexity Low_complexity 1 41 0 9 832 321 241 17 69 chr12 32498292 32498408 -88759122 - L1MCa LINE L1 -4498 2010 1901 9 832 392 93 0 67 chr12 32498414 32498518 -88759012 + (TA)n Simple_repeat Simple_repeat 1 97 0 9 832 25 65 0 0 chr12 32499610 32499656 -88757874 + AT_rich Low_complexity Low_complexity 1 46 0 9 832 290 325 0 0 chr12 32499903 32499929 -88757601 + B4 SINE B4 61 86 -206 9 832 346 156 0 30 chr12 32499929 32499995 -88757535 + B1_Mur4 SINE Alu 3 66 -84 9 832 474 120 0 0 chr12 32500051 32500126 -88757404 + (GGGA)n Simple_repeat Simple_repeat 3 77 0 1 832 426 255 0 62 chr12 32500604 32500717 -88756813 - PB1D10 SINE Alu -2 115 10 2 832 656 318 91 34 chr12 32500766 32501030 -88756500 - B4A SINE B4 -4 288 10 3 832 248 189 54 0 chr12 32501043 32501117 -88756413 - L1MB2 LINE L1 -2 6169 6092 4 832 307 278 9 0 chr12 32501196 32501311 -88756219 - L1MB2 LINE L1 -283 5888 5773 4 832 2600 282 84 29 chr12 32501326 32502509 -88755021 - Lx9 LINE L1 -20 7624 6377 5 832 469 276 57 19 chr12 32503554 32503816 -88753714 - L1MB2 LINE L1 -1098 5042 4771 4 832 22 0 0 0 chr12 32503854 32503876 -88753654 + AT_rich Low_complexity Low_complexity 1 22 0 6 832 27 49 0 0 chr12 32504027 32504068 -88753462 + AT_rich Low_complexity Low_complexity 1 41 0 7 832 417 249 259 30 chr12 32504083 32504249 -88753281 - B3 SINE B2 -12 204 1 8 832 372 315 69 57 chr12 32504513 32504759 -88752771 - MIRb SINE MIR -1 267 19 9 832 401 298 118 21 chr12 32504787 32504931 -88752599 - B3A SINE B2 -35 160 3 1 832 791 201 0 26 chr12 32505251 32505404 -88752126 - B1_Mur3 SINE Alu 0 149 1 1 832 373 309 20 10 chr12 32505589 32505687 -88751843 + RSINE1 SINE B4 3 101 -64 1 832 210 37 0 0 chr12 32505768 32505795 -88751735 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 833 218 277 0 0 chr12 32505942 32505989 -88751541 - PB1D10 SINE Alu -3 114 68 1 833 322 301 113 23 chr12 32506326 32506503 -88751027 - L1ME2 LINE L1 -2 6162 5970 1 833 1311 170 184 48 chr12 32506655 32506964 -88750566 - MTD LTR MaLR -8 411 61 1 833 1185 236 82 83 chr12 32507561 32508061 -88749469 - MT2B LTR ERVL -6 595 4 1 833 498 313 23 15 chr12 32509328 32509461 -88748069 - RSINE1 SINE B4 -19 146 13 1 833 238 271 70 12 chr12 32509804 32509890 -88747640 + ORR1C1 LTR MaLR 185 275 -103 1 833 372 254 186 23 chr12 32509890 32510067 -88747463 - L1MEc LINE L1 -5850 550 345 2 833 379 265 113 61 chr12 32510095 32510324 -88747206 - L1MEc LINE L1 -6139 261 21 2 833 684 103 0 0 chr12 32510375 32510472 -88747058 - B2_Mm2 SINE B2 -98 97 1 2 833 315 0 0 0 chr12 32510561 32510596 -88746934 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 2 833 253 340 76 71 chr12 32511115 32511340 -88746190 + L2 LINE L2 1833 2058 -1361 2 833 1618 37 0 0 chr12 32511964 32512151 -88745379 - B2_Mm1t SINE B2 -6 187 1 2 833 285 175 121 45 chr12 32512492 32512558 -88744972 + B3 SINE B2 1 71 -145 2 833 703 221 44 0 chr12 32512570 32512706 -88744824 + B1_Mur1 SINE Alu 3 144 -5 2 833 352 312 9 44 chr12 32513397 32513511 -88744019 - PB1D7 SINE Alu -9 111 2 2 833 268 316 131 10 chr12 32513551 32513650 -88743880 + B1F1 SINE Alu 3 113 -36 2 833 6794 112 17 19 chr12 32513869 32515308 -88742222 - Lx LINE L1 -6 6648 5212 2 833 394 217 0 89 chr12 32515310 32515411 -88742119 + B1F SINE Alu 56 147 -2 3 833 545 328 52 74 chr12 32515426 32515871 -88741659 - L1ME1 LINE L1 -126 6053 5619 3 833 306 0 0 0 chr12 32515900 32515934 -88741596 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 833 1475 105 5 9 chr12 32516119 32516340 -88741190 - RLTR27 LTR ERVK -89 220 1 3 833 418 292 195 13 chr12 32516761 32517059 -88740471 - L1ME1 LINE L1 -1381 4765 4414 3 833 333 282 84 13 chr12 32517372 32517619 -88739911 - L1ME1 LINE L1 -2221 3925 3655 3 833 576 48 0 12 chr12 32517633 32517718 -88739812 + L1Md_T LINE L1 6499 6582 0 3 833 738 0 0 0 chr12 32518561 32518643 -88738887 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 3 833 3562 58 0 24 chr12 32518647 32519107 -88738423 - L1Md_F2 LINE L1 -19 6563 6115 3 833 375 301 42 18 chr12 32520232 32520398 -88737132 + L1M4 LINE L1 4847 5016 -1130 3 833 2487 147 87 44 chr12 32520847 32521352 -88736178 - RLTR11A LTR ERVK -1 527 1 3 833 198 0 0 0 chr12 32522030 32522052 -88735478 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 833 2839 139 39 10 chr12 32523227 32523712 -88733818 - RLTR19 LTR ERVK 0 499 1 4 833 346 244 37 0 chr12 32523811 32523893 -88733637 - B1_Mus1 SINE Alu -61 87 3 4 833 259 273 37 61 chr12 32523830 32523912 -88733618 - B4 SINE B4 -143 149 70 4 833 185 234 21 21 chr12 32524171 32524219 -88733311 - MIR SINE MIR -119 89 42 4 833 575 216 76 41 chr12 32525608 32525753 -88731777 + B1_Mur4 SINE Alu 1 150 0 4 833 426 300 160 102 chr12 32526573 32526848 -88730682 + B4A SINE B4 2 292 0 4 833 2048 160 58 6 chr12 32527181 32527546 -88729984 - ORR1C2 LTR MaLR 0 384 1 4 833 463 267 13 52 chr12 32527659 32527813 -88729717 - RSINE1 SINE B4 -16 149 2 4 833 708 289 76 22 chr12 32528343 32528619 -88728911 - B4A SINE B4 -1 291 1 4 833 784 289 28 28 chr12 32528753 32528794 -88728736 - B4A SINE B4 -3 289 249 4 833 261 0 0 0 chr12 32528794 32528823 -88728707 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 5 833 784 289 28 28 chr12 32528823 32529066 -88728464 - B4A SINE B4 -44 248 7 4 833 1312 90 37 5 chr12 32529273 32529462 -88728068 + B2_Mm2 SINE B2 1 195 0 5 833 733 165 28 14 chr12 32529485 32529626 -88727904 + B1_Mur2 SINE Alu 1 143 -6 5 833 320 290 130 9 chr12 32530895 32531003 -88726527 + PB1 SINE Alu 3 123 -4 5 833 1130 234 163 137 chr12 32531324 32531815 -88725715 - RLTR18B LTR ERVK -8 504 1 5 833 298 277 12 35 chr12 32532167 32532253 -88725277 - PB1 SINE Alu -1 126 43 5 833 933 126 0 40 chr12 32532798 32532947 -88724583 - B1_Mus2 SINE Alu -3 144 2 5 833 1686 184 113 49 chr12 32533944 32534285 -88723245 + RMER1B Other Other 411 790 -276 5 833 2977 32 3 0 chr12 32534285 32534630 -88722900 - ORR1A0 LTR MaLR 0 346 1 5 833 1686 184 113 49 chr12 32534630 32534758 -88722772 + RMER1B Other Other 791 910 -156 5 833 498 160 150 16 chr12 32534771 32534898 -88722632 - Lx6 LINE L1 -1528 5932 5789 5 833 3162 209 80 42 chr12 32534900 32535733 -88721797 - Lx6 LINE L1 -816 6644 5780 6 833 514 47 0 0 chr12 32535735 32535819 -88721711 - L1_Mus2 LINE L1 -3 6579 6496 6 833 4185 171 48 19 chr12 32535821 32536700 -88720830 - L1_Mur3 LINE L1 -94 5786 4883 6 833 692 303 42 84 chr12 32536712 32537061 -88720469 - RLTR18B LTR ERVK -1 511 192 6 833 2854 149 33 137 chr12 32537088 32537456 -88720074 - L1_Mur3 LINE L1 -2329 3551 3195 6 833 418 108 0 44 chr12 32537456 32537524 -88720006 - B1_Mur3 SINE Alu 0 149 85 6 833 2854 149 33 137 chr12 32537524 32537956 -88719574 - L1_Mur3 LINE L1 -2329 3194 2774 6 833 210 150 0 0 chr12 32538348 32538388 -88719142 + (T)n Simple_repeat Simple_repeat 1 40 0 6 833 1230 41 0 0 chr12 32538389 32538534 -88718996 - B1_Mm SINE Alu -2 145 1 6 833 441 0 0 0 chr12 32538640 32538689 -88718841 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 6 833 1143 58 39 0 chr12 32538689 32538844 -88718686 - B2_Mm2 SINE B2 -34 161 1 6 833 593 103 11 0 chr12 32539458 32539545 -88717985 + B2_Mm2 SINE B2 2 89 -106 7 833 302 309 75 48 chr12 32540367 32540506 -88717024 + RSINE1 SINE B4 8 151 -14 7 833 351 0 0 0 chr12 32540506 32540545 -88716985 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 833 1178 49 0 7 chr12 32540567 32540712 -88716818 + B1_Mm SINE Alu 1 144 -3 7 833 252 0 0 0 chr12 32540712 32540740 -88716790 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 7 833 1270 199 156 3 chr12 32541250 32541578 -88715952 + ORR1C2 LTR MaLR 5 382 -2 7 833 1185 95 38 22 chr12 32542280 32542463 -88715067 + B2_Mm2 SINE B2 2 187 -8 7 833 216 200 0 43 chr12 32543490 32543537 -88713993 - B1_Mus2 SINE Alu -100 47 3 7 833 218 267 0 0 chr12 32543497 32543542 -88713988 - ID_B1 SINE B4 -101 123 79 7 833 504 0 0 0 chr12 32543551 32543607 -88713923 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 833 763 197 7 0 chr12 32544826 32544968 -88712562 + B1_Mm SINE Alu 4 146 -1 8 833 273 75 0 0 chr12 32545320 32545360 -88712170 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 8 833 1103 70 21 0 chr12 32545360 32545502 -88712028 - B1_Mus2 SINE Alu -2 145 1 8 833 1334 102 16 0 chr12 32545504 32545691 -88711839 - B2_Mm2 SINE B2 -4 191 2 8 833 29 28 0 0 chr12 32545699 32545735 -88711795 + AT_rich Low_complexity Low_complexity 1 36 0 8 833 33 0 0 0 chr12 32545771 32545804 -88711726 + AT_rich Low_complexity Low_complexity 1 33 0 8 833 719 196 14 21 chr12 32545824 32545965 -88711565 + B1_Mur3 SINE Alu 1 140 -9 8 833 700 230 0 7 chr12 32546843 32546983 -88710547 + B1F SINE Alu 2 140 -9 8 833 226 284 30 0 chr12 32546984 32547051 -88710479 + GA-rich Low_complexity Low_complexity 2 70 0 8 833 545 301 35 5 chr12 32547079 32547276 -88710254 + B3 SINE B2 8 210 -6 8 833 324 314 68 10 chr12 32547655 32547758 -88709772 + MER20 DNA MER1_type 65 173 -46 9 833 236 298 139 66 chr12 32547829 32548073 -88709457 - L2 LINE L2 -1199 2220 1959 9 833 4725 90 27 23 chr12 32549108 32549804 -88707726 + L1_Mus4 LINE L1 5935 6633 -3 9 833 7673 43 2 1 chr12 32550100 32551289 -88706241 - L1Md_F2 LINE L1 0 6582 5393 9 833 3777 61 2 2 chr12 32551280 32551791 -88705739 + L1Md_F2 LINE L1 4882 5392 -491 9 833 198 0 0 0 chr12 32551970 32551992 -88705538 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 9 833 718 280 107 26 chr12 32552111 32552606 -88704924 - L1MB8 LINE L1 -199 5979 5445 9 833 337 256 90 0 chr12 32552802 32552880 -88704650 - PB1 SINE Alu -38 89 5 9 833 251 182 121 0 chr12 32554465 32554531 -88702999 + PB1D10 SINE Alu 26 99 -18 9 833 380 296 100 20 chr12 32555297 32555497 -88702033 + MER20 DNA MER1_type 1 216 -3 9 833 615 182 0 0 chr12 32555552 32555673 -88701857 + (CA)n Simple_repeat Simple_repeat 1 121 0 9 833 697 182 79 21 chr12 32555705 32555845 -88701685 - B1_Mur1 SINE Alu -1 148 1 1 833 194 0 39 0 chr12 32555846 32555872 -88701658 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 833 1101 44 15 0 chr12 32555872 32556007 -88701523 - B1_Mus2 SINE Alu -9 138 2 1 833 462 303 122 11 chr12 32557948 32558664 -88698866 - L1MEf LINE L1 -2112 4419 3595 1 833 778 199 14 0 chr12 32558688 32558834 -88698696 - B3 SINE B2 -68 148 1 1 833 693 276 30 43 chr12 32558834 32559066 -88698464 - B4A SINE B4 -62 230 2 1 833 253 245 90 26 chr12 32559178 32559333 -88698197 - L1MD LINE L1 -3190 2956 2792 1 833 555 274 122 30 chr12 32559584 32560069 -88697461 - L1MEf LINE L1 -3565 2972 2434 1 833 183 80 0 0 chr12 32560069 32560094 -88697436 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 833 311 260 168 10 chr12 32560094 32560112 -88697418 - L1MEf LINE L1 -4185 2433 2410 1 833 251 167 0 100 chr12 32560118 32560198 -88697332 - RMER10A LTR ERVL -240 202 131 1 833 207 162 0 0 chr12 32560204 32560241 -88697289 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 833 583 165 17 9 chr12 32560253 32560369 -88697161 - RMER10A LTR ERVL -325 117 1 1 833 314 291 113 7 chr12 32560631 32560773 -88696757 - L1MEf LINE L1 -4674 1959 1803 1 833 274 365 17 9 chr12 32561584 32561700 -88695830 - PB1D7 SINE Alu -1 119 3 1 833 337 325 26 0 chr12 32561712 32561829 -88695701 - ID_B1 SINE B4 0 224 105 1 833 235 405 6 12 chr12 32561872 32562032 -88695498 - L1MEf LINE L1 -5630 897 739 1 833 798 306 110 18 chr12 32562119 32562572 -88694958 + L1M2 LINE L1 2219 2713 -3430 1 833 13378 81 1 11 chr12 32562600 32565174 -88692356 - L1_Mus1 LINE L1 0 6567 4025 1 833 352 309 43 22 chr12 32565353 32565492 -88692038 - ID_B1 SINE B4 -14 210 69 1 833 591 304 56 10 chr12 32565500 32565836 -88691694 + L1M2 LINE L1 2864 3210 -2933 1 833 1120 79 0 0 chr12 32565836 32565975 -88691555 - B1_Mus2 SINE Alu -8 139 1 1 833 512 296 83 47 chr12 32565975 32566373 -88691157 + L1M2 LINE L1 3180 3628 -2512 1 833 856 346 73 11 chr12 32566492 32567148 -88690382 + L1MA4 LINE L1 5333 6021 -279 1 833 887 252 141 84 chr12 32567302 32568013 -88689517 - RLTR40 LTR ERVK -65 752 2 1 833 1679 36 0 0 chr12 32568506 32568698 -88688832 + B2_Mm1a SINE B2 1 192 -1 1 833 1866 130 90 0 chr12 32570375 32570674 -88686856 - ORR1A3 LTR MaLR 0 326 1 1 833 1109 110 147 0 chr12 32571707 32571898 -88685632 + URR1B DNA MER1_type 7 225 0 1 833 816 79 8 23 chr12 32572334 32572464 -88685066 - URR1B DNA MER1_type -2 223 96 1 833 632 249 148 94 chr12 32572514 32572948 -88684582 + L1MA9 LINE L1 2200 2656 -3487 1 833 710 186 50 7 chr12 32573058 32573199 -88684331 - B1_Mur4 SINE Alu -2 148 2 1 833 225 277 23 152 chr12 32573091 32573223 -88684307 - MT2B LTR ERVL -337 264 150 1 833 315 302 21 0 chr12 32573252 32573348 -88684182 + B1F SINE Alu 50 147 -2 1 833 1094 292 115 26 chr12 32573557 32574131 -88683399 + L1MA9 LINE L1 3400 4024 -2119 1 833 339 254 183 61 chr12 32574186 32574546 -88682984 + L1MA9 LINE L1 4128 4531 -1612 1 833 229 214 71 0 chr12 32574562 32574618 -88682912 + L1M2 LINE L1 3694 3753 -2390 1 833 611 272 101 124 chr12 32574619 32574917 -88682613 + B4 SINE B4 2 292 0 1 833 234 274 0 31 chr12 32574948 32575012 -88682518 + B4 SINE B4 231 292 0 1 833 834 227 155 103 chr12 32575056 32575244 -88682286 + L1MA9 LINE L1 4548 4749 -1394 1 833 250 264 172 39 chr12 32575244 32575500 -88682030 + B4 SINE B4 1 290 -2 1 833 834 227 155 103 chr12 32575500 32575910 -88681620 + L1MA9 LINE L1 4750 5177 -966 1 833 192 77 0 0 chr12 32576012 32576038 -88681492 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 1 833 4297 19 2 0 chr12 32576064 32576545 -88680985 + LTRIS_Mm LTR ERV1 1 482 0 1 833 379 254 231 0 chr12 32576635 32576808 -88680722 + ID_B1 SINE B4 12 224 0 1 833 495 0 0 0 chr12 32576817 32576872 -88680658 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 833 226 236 0 0 chr12 32576970 32577025 -88680505 + L1MA9 LINE L1 5533 5587 -725 1 833 248 260 39 52 chr12 32577026 32577047 -88680483 + B4 SINE B4 66 141 -151 1 833 320 182 0 18 chr12 32577047 32577103 -88680427 + PB1D9 SINE Alu 2 56 -64 1 833 629 311 115 21 chr12 32577148 32577566 -88679964 + L1MA9 LINE L1 5600 6056 -256 1 833 1307 62 11 0 chr12 32579243 32579420 -88678110 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 833 270 0 0 0 chr12 32579865 32579895 -88677635 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 833 52 30 0 0 chr12 32583981 32584047 -88673483 + AT_rich Low_complexity Low_complexity 1 66 0 1 833 732 208 94 20 chr12 32584077 32584278 -88673252 - B3 SINE B2 0 216 1 1 833 1874 105 14 7 chr12 32584595 32584891 -88672639 - ORR1A1 LTR MaLR 0 346 49 1 833 37 0 0 0 chr12 32584893 32584930 -88672600 + AT_rich Low_complexity Low_complexity 1 37 0 1 833 396 0 0 0 chr12 32584960 32585004 -88672526 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 833 1219 22 0 0 chr12 32585004 32585142 -88672388 - B1_Mus2 SINE Alu -8 139 2 1 833 334 146 0 0 chr12 32585142 32585197 -88672333 - ORR1A1 LTR MaLR -274 55 1 1 833 761 165 0 70 chr12 32586247 32586390 -88671140 - B1_Mus2 SINE Alu -14 133 1 1 833 1134 90 0 0 chr12 32587148 32587293 -88670237 + B1_Mus2 SINE Alu 1 145 -2 1 833 908 209 245 33 chr12 32587549 32587851 -88669679 - ORR1D2 LTR MaLR -2 368 3 1 833 734 171 267 24 chr12 32588308 32588518 -88669012 - Lx5 LINE L1 -3 7047 6787 1 833 341 313 61 0 chr12 32588638 32588737 -88668793 - PB1D10 SINE Alu -1 116 12 1 833 243 281 188 0 chr12 32588779 32588875 -88668655 + PB1D10 SINE Alu 1 114 -3 1 833 189 0 0 0 chr12 32589832 32589853 -88667677 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 833 696 122 16 39 chr12 32589859 32589987 -88667543 - B1_Mus1 SINE Alu -18 130 6 1 833 274 248 0 15 chr12 32591426 32591518 -88666012 + L1M4 LINE L1 2377 2466 -3381 1 833 238 257 0 56 chr12 32591624 32591768 -88665762 + (CCTA)n Simple_repeat Simple_repeat 4 139 0 1 833 1365 83 28 0 chr12 32592749 32592929 -88664601 + B2_Mm2 SINE B2 1 185 -10 1 833 471 308 65 44 chr12 32592983 32593258 -88664272 + L1M3 LINE L1 2570 2850 -3293 1 833 22 0 0 0 chr12 32593332 32593354 -88664176 + AT_rich Low_complexity Low_complexity 1 22 0 1 833 532 294 6 61 chr12 32593356 32593519 -88664011 - RSINE1 SINE B4 -8 157 4 1 833 378 0 0 0 chr12 32593519 32593561 -88663969 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 833 974 40 0 0 chr12 32593675 32593801 -88663729 + B1_Mus1 SINE Alu 23 148 0 1 833 378 270 68 17 chr12 32593814 32593931 -88663599 - RSINE1 SINE B4 -41 124 2 1 833 717 302 131 26 chr12 32593940 32594711 -88662819 + L1M3 LINE L1 2871 3722 -2421 1 833 862 278 175 17 chr12 32595101 32595581 -88661949 + L1M3 LINE L1 3831 4386 -1754 1 833 488 299 106 49 chr12 32595905 32596465 -88661065 + L1M3 LINE L1 4577 5162 -981 1 833 432 175 175 0 chr12 32596466 32596563 -88660967 + PB1D9 SINE Alu 1 114 -6 1 833 210 186 0 23 chr12 32596564 32596608 -88660922 + A-rich Low_complexity Low_complexity 5 47 0 1 833 204 212 0 0 chr12 32596616 32596682 -88660848 + GA-rich Low_complexity Low_complexity 2 67 0 1 833 370 333 92 68 chr12 32596869 32597096 -88660434 + L1_Mur3 LINE L1 5175 5405 -475 1 833 1108 66 0 0 chr12 32597096 32597232 -88660298 + B1_Mus2 SINE Alu 1 136 -11 1 833 315 0 0 0 chr12 32597232 32597267 -88660263 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 833 370 337 89 69 chr12 32597267 32597477 -88660053 + L1_Mur3 LINE L1 5406 5650 -641 1 833 200 184 0 0 chr12 32598767 32598805 -88658725 + CT-rich Low_complexity Low_complexity 4 41 0 1 833 601 277 197 14 chr12 32599484 32599773 -88657757 - RMER5 LTR ERV1 -78 456 115 1 833 1327 237 25 0 chr12 32600262 32600578 -88656952 + ORR1D1 LTR MaLR 51 374 0 1 833 432 0 0 0 chr12 32600578 32600626 -88656904 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 833 579 313 31 65 chr12 32600631 32600925 -88656605 - B4 SINE B4 -6 286 3 1 833 1200 29 7 0 chr12 32601184 32601324 -88656206 + B1_Mus2 SINE Alu 1 141 -6 1 833 26 64 0 0 chr12 32601509 32601556 -88655974 + AT_rich Low_complexity Low_complexity 1 47 0 1 833 605 279 50 0 chr12 32601602 32601763 -88655767 + B3A SINE B2 1 169 -29 1 833 247 293 13 51 chr12 32601839 32601918 -88655612 - L1M3b LINE L1 -5537 744 669 1 833 956 117 148 5 chr12 32601919 32602108 -88655422 - URR1B DNA MER1_type -8 217 2 1 833 361 259 110 7 chr12 32602217 32602353 -88655177 - L1M3b LINE L1 -5757 524 375 1 833 713 265 145 18 chr12 32603070 32603413 -88654117 - MTE2a LTR MaLR -14 405 21 1 833 667 115 131 51 chr12 32604264 32604401 -88653129 + B1_Mur3 SINE Alu 2 149 0 1 833 487 223 0 0 chr12 32604858 32604959 -88652571 + PB1D7 SINE Alu 12 112 -8 1 833 530 178 36 45 chr12 32604984 32605096 -88652434 + PB1D9 SINE Alu 8 118 -2 1 833 213 65 0 0 chr12 32605099 32605130 -88652400 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 833 180 125 0 0 chr12 32605199 32605231 -88652299 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 833 616 77 19 0 chr12 32606314 32606418 -88651112 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 833 505 207 14 69 chr12 32612643 32612788 -88644742 + ID_B1 SINE B4 77 213 -11 1 833 216 0 0 0 chr12 32613665 32613689 -88643841 + (A)n Simple_repeat Simple_repeat 1 24 0 1 833 605 158 0 65 chr12 32615294 32615402 -88642128 + B3 SINE B2 1 101 -115 1 833 368 303 49 8 chr12 32616279 32616402 -88641128 + B1F SINE Alu 15 142 -7 1 833 182 143 0 0 chr12 32616885 32616913 -88640617 + L4 LINE RTE 311 338 -1691 1 833 517 253 152 12 chr12 32617088 32617276 -88640254 - B3A SINE B2 0 198 1 1 833 243 259 111 101 chr12 32617326 32617515 -88640015 - MIR SINE MIR -57 205 15 1 833 669 289 143 23 chr12 32617565 32617873 -88639657 + MER68 LTR ERVL 182 526 -37 1 833 263 93 52 0 chr12 32618924 32618968 -88638562 + B3 SINE B2 1 46 -152 1 833 304 261 157 11 chr12 32618992 32619081 -88638449 + B3 SINE B2 27 128 -88 1 833 1183 38 0 0 chr12 32619628 32619761 -88637769 + B1_Mus2 SINE Alu 2 134 -13 1 833 219 36 0 0 chr12 32619761 32619789 -88637741 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 833 184 278 126 58 chr12 32620214 32620317 -88637213 - L2b LINE L2 -8 3367 3258 1 833 920 159 227 12 chr12 32620659 32620831 -88636699 + B3 SINE B2 2 210 -6 1 833 180 111 0 0 chr12 32621333 32621360 -88636170 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 833 1220 62 0 0 chr12 32623096 32623242 -88634288 + B1_Mus2 SINE Alu 2 147 0 1 833 1096 170 78 24 chr12 32624310 32624515 -88633015 - B3 SINE B2 0 216 1 2 833 31 0 0 0 chr12 32624656 32624687 -88632843 + AT_rich Low_complexity Low_complexity 1 31 0 2 833 27 49 0 0 chr12 32624740 32624781 -88632749 + AT_rich Low_complexity Low_complexity 1 41 0 2 833 242 225 392 59 chr12 32624981 32625099 -88632431 - RSINE1 SINE B4 -6 159 3 2 833 35 0 0 0 chr12 32625388 32625423 -88632107 + AT_rich Low_complexity Low_complexity 1 35 0 2 833 296 315 45 9 chr12 32625860 32625972 -88631558 + PB1D10 SINE Alu 1 116 -1 2 833 256 279 24 60 chr12 32626021 32626105 -88631425 + PB1D10 SINE Alu 1 81 -36 2 833 405 54 0 0 chr12 32626288 32626344 -88631186 + (CCAA)n Simple_repeat Simple_repeat 3 58 0 2 833 717 194 74 7 chr12 32626344 32626479 -88631051 + B1_Mur2 SINE Alu 6 149 0 2 833 1090 214 24 0 chr12 32626611 32626817 -88630713 + B3 SINE B2 2 212 -4 2 833 1186 82 0 0 chr12 32627409 32627555 -88629975 - B1_Mus1 SINE Alu -2 146 1 2 833 418 293 88 57 chr12 32628260 32628488 -88629042 + B4A SINE B4 44 278 -14 2 833 495 254 14 119 chr12 32629223 32629366 -88628164 + B1_Mur1 SINE Alu 3 130 -19 2 833 396 0 0 0 chr12 32629397 32629441 -88628089 + (A)n Simple_repeat Simple_repeat 1 44 0 2 833 1238 57 0 0 chr12 32629879 32630020 -88627510 + B1_Mus1 SINE Alu 2 142 -6 2 833 284 0 28 0 chr12 32630022 32630058 -88627472 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2 833 180 260 20 0 chr12 32630530 32630580 -88626950 + MIRb SINE MIR 131 181 -87 2 833 1579 61 74 9 chr12 32631634 32631850 -88625680 - L1Md_F2 LINE L1 -150 6432 6203 2 833 26 0 0 0 chr12 32631953 32631979 -88625551 + AT_rich Low_complexity Low_complexity 1 26 0 2 833 680 243 15 56 chr12 32632424 32632620 -88624910 + B3 SINE B2 25 212 -4 2 833 470 182 20 18 chr12 32632737 32632851 -88624679 + B1F2 SINE Alu 15 121 -28 2 833 216 293 17 0 chr12 32632890 32632948 -88624582 + PB1D7 SINE Alu 45 103 -17 2 833 270 0 0 0 chr12 32632987 32633017 -88624513 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 833 333 0 0 0 chr12 32633017 32633053 -88624477 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 833 414 217 106 21 chr12 32633122 32633216 -88624314 - ID_B1 SINE B4 -21 203 102 2 833 237 224 62 50 chr12 32633159 32633239 -88624291 + YREP_Mm Unknown Unknown 244 324 -1488 2 833 23 0 0 0 chr12 32634512 32634535 -88622995 + GC_rich Low_complexity Low_complexity 1 23 0 2 833 189 0 0 0 chr12 32635840 32635861 -88621669 + (T)n Simple_repeat Simple_repeat 1 21 0 2 834 222 37 0 0 chr12 32637261 32637288 -88620242 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 834 1199 71 0 0 chr12 32638759 32638900 -88618630 + B1_Mus1 SINE Alu 2 142 -6 2 834 257 0 0 29 chr12 32638904 32638938 -88618592 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 2 834 21 0 0 0 chr12 32639804 32639825 -88617705 + AT_rich Low_complexity Low_complexity 1 21 0 2 834 279 264 11 32 chr12 32639853 32639947 -88617583 + PB1 SINE Alu 5 96 -31 2 834 987 138 189 22 chr12 32640172 32640357 -88617173 + B3 SINE B2 1 216 0 2 834 744 138 145 112 chr12 32640386 32640565 -88616965 + B2_Mm2 SINE B2 2 186 -9 2 834 1008 70 0 0 chr12 32641704 32641832 -88615698 - B1_Mus2 SINE Alu -1 146 19 2 834 290 19 35 53 chr12 32642208 32642265 -88615265 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 2 834 894 101 22 0 chr12 32642266 32642405 -88615125 - B1_Mus1 SINE Alu 0 148 7 2 834 21 0 0 0 chr12 32645397 32645418 -88612112 + AT_rich Low_complexity Low_complexity 1 21 0 2 834 381 227 223 16 chr12 32645858 32645979 -88611551 - B1F SINE Alu -3 146 1 2 834 703 264 127 16 chr12 32646198 32646644 -88610886 + L1MA7 LINE L1 5364 5880 -420 2 834 5480 28 0 0 chr12 32648059 32648657 -88608873 - L1Md_A LINE L1 0 6582 5985 2 834 1431 192 176 143 chr12 32650082 32650598 -88606932 + MT2A LTR ERVL 1 533 0 2 834 567 307 28 11 chr12 32650721 32650899 -88606631 + MER102a DNA MER1_type 117 297 -33 2 834 405 254 129 24 chr12 32651227 32651437 -88606093 - L2a LINE L2 -274 3152 2921 2 834 989 151 100 6 chr12 32652396 32652576 -88604954 + URR1A DNA MER1_type 1 197 -29 2 834 546 246 83 28 chr12 32653284 32653464 -88604066 + MLT1A0 LTR MaLR 2 191 -174 2 834 186 308 0 0 chr12 32653897 32653949 -88603581 - MER5B DNA MER1_type -123 55 4 2 834 469 264 121 12 chr12 32656021 32656186 -88601344 - MER5A DNA MER1_type -6 183 1 2 834 216 67 0 0 chr12 32656240 32656270 -88601260 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 834 1017 290 29 25 chr12 32656340 32656616 -88600914 - B4A SINE B4 -12 280 4 2 834 216 0 0 0 chr12 32657991 32658015 -88599515 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2 834 781 85 118 8 chr12 32658024 32658143 -88599387 - B1_Mur4 SINE Alu -8 142 11 2 834 420 158 18 114 chr12 32658048 32658162 -88599368 - MT2B LTR ERVL -344 257 155 2 834 1060 96 7 27 chr12 32658941 32659091 -88598439 + B1_Mus1 SINE Alu 2 148 0 2 834 1320 64 2 0 chr12 32659104 32659596 -88597934 + (GGA)n Simple_repeat Simple_repeat 1 493 0 2 834 462 186 35 0 chr12 32659939 32660025 -88597505 + B1_Mur2 SINE Alu 60 148 -1 2 834 1624 41 0 30 chr12 32660538 32660738 -88596792 - B2_Mm2 SINE B2 0 195 2 2 834 216 270 13 26 chr12 32661349 32661425 -88596105 + A-rich Low_complexity Low_complexity 1 75 0 2 834 262 280 93 31 chr12 32662084 32662246 -88595284 - L1MC1 LINE L1 -88 6245 6074 2 834 470 222 131 0 chr12 32663668 32663821 -88593709 - L1MC1 LINE L1 -15 6318 6146 2 834 1285 261 128 24 chr12 32663850 32664442 -88593088 - L1MC1 LINE L1 -290 6043 5390 2 834 640 270 71 40 chr12 32664437 32664761 -88592769 - L1MB5 LINE L1 -90 6084 5751 2 834 785 250 161 100 chr12 32664756 32664861 -88592669 - L1MC1 LINE L1 -816 5330 5246 2 834 1042 138 191 11 chr12 32664861 32665044 -88592486 - B3 SINE B2 0 216 1 2 834 785 250 161 100 chr12 32665044 32665151 -88592379 - L1MC1 LINE L1 -901 5245 5161 2 834 446 269 9 9 chr12 32665151 32665267 -88592263 - PB1D10 SINE Alu 0 117 2 2 834 785 250 161 100 chr12 32665267 32665711 -88591819 - L1MC1 LINE L1 -986 5160 4633 2 834 899 271 108 48 chr12 32665768 32666442 -88591088 - L1M4 LINE L1 -415 5759 5049 2 834 426 39 0 0 chr12 32666487 32666539 -88590991 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 834 1970 299 168 25 chr12 32666561 32667672 -88589858 + Lx8 LINE L1 6204 7473 0 2 834 1508 54 38 0 chr12 32667787 32667972 -88589558 + B2_Mm2 SINE B2 1 192 -3 2 834 21 36 0 0 chr12 32668112 32668140 -88589390 + AT_rich Low_complexity Low_complexity 1 28 0 2 834 409 271 261 17 chr12 32669569 32669859 -88587671 + Lx8 LINE L1 6999 7359 -114 2 834 220 306 0 0 chr12 32669925 32669997 -88587533 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 834 391 281 38 23 chr12 32670518 32670649 -88586881 + MER5A1 DNA MER1_type 34 166 0 2 834 201 111 56 0 chr12 32671132 32671168 -88586362 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 2 834 779 269 95 70 chr12 32671180 32671464 -88586066 - B4A SINE B4 0 292 2 2 834 310 261 0 14 chr12 32673525 32673595 -88583935 - ID4_ SINE ID -11 72 4 2 834 195 69 0 0 chr12 32673867 32673896 -88583634 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 2 834 238 300 50 0 chr12 32674587 32674667 -88582863 - MIR SINE MIR -6 256 173 2 834 327 136 0 0 chr12 32674861 32674920 -88582610 + (TCTCTG)n Simple_repeat Simple_repeat 4 62 0 2 834 420 20 0 0 chr12 32674928 32674977 -88582553 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 834 247 282 68 0 chr12 32675014 32675117 -88582413 + MER58B DNA MER1_type 194 303 -38 2 834 1681 197 58 18 chr12 32676274 32676667 -88580863 - MTD LTR MaLR -8 411 3 2 834 1092 124 222 0 chr12 32676881 32677066 -88580464 - URR1A DNA MER1_type 0 226 1 2 834 1407 79 21 0 chr12 32677709 32677899 -88579631 + B2_Mm2 SINE B2 1 194 -1 2 834 299 192 14 0 chr12 32677907 32677980 -88579550 + GA-rich Low_complexity Low_complexity 2 75 0 2 834 5262 171 61 20 chr12 32678724 32679616 -88577914 + Lx9 LINE L1 6548 7457 -187 2 834 876 44 0 0 chr12 32679616 32679729 -88577801 + (TG)n Simple_repeat Simple_repeat 2 114 0 2 834 5262 171 61 20 chr12 32679729 32679880 -88577650 + Lx9 LINE L1 7458 7633 -11 2 834 309 51 0 0 chr12 32680776 32680815 -88576715 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 834 647 230 22 0 chr12 32680815 32680950 -88576580 - B1_Mur2 SINE Alu -9 140 3 2 834 350 316 19 56 chr12 32681411 32681572 -88575958 + MER20 DNA MER1_type 23 177 -42 2 834 286 274 167 9 chr12 32681602 32681716 -88575814 - MIRb SINE MIR -61 207 76 2 834 386 294 198 15 chr12 32681722 32681995 -88575535 - MamRep605 Unknown Unknown -110 766 444 2 834 441 0 0 0 chr12 32682018 32682067 -88575463 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 834 1156 189 139 4 chr12 32684660 32684941 -88572589 - MTC LTR MaLR 0 421 103 2 834 3896 199 83 42 chr12 32684950 32685940 -88571590 + Lx7 LINE L1 6667 7696 0 2 834 1358 82 43 0 chr12 32686059 32686243 -88571287 - B2_Mm2 SINE B2 0 195 4 2 834 233 200 0 39 chr12 32686885 32686937 -88570593 + A-rich Low_complexity Low_complexity 4 53 0 2 834 1465 182 81 6 chr12 32687027 32687347 -88570183 + ORR1C2 LTR MaLR 41 384 0 2 834 195 49 48 24 chr12 32688537 32688579 -88568951 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 834 3413 114 5 47 chr12 32688969 32689539 -88567991 - L1_Mur2 LINE L1 -1938 3939 3394 2 834 314 275 0 0 chr12 32689553 32689633 -88567897 - ID4 SINE ID -3 80 1 2 834 427 186 175 0 chr12 32689863 32689960 -88567570 + PB1D9 SINE Alu 1 114 -6 3 834 861 244 69 10 chr12 32689979 32690147 -88567383 + B3 SINE B2 2 180 -36 3 834 486 0 0 0 chr12 32690147 32690201 -88567329 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 834 861 244 69 10 chr12 32690201 32690235 -88567295 + B3 SINE B2 181 216 0 3 834 2792 165 107 19 chr12 32690277 32690803 -88566727 - RMER1B Other Other -4 1062 491 3 834 207 0 0 0 chr12 32691151 32691174 -88566356 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 834 670 235 98 24 chr12 32692092 32692297 -88565233 + ID_B1 SINE B4 3 222 -2 3 834 1188 130 38 5 chr12 32692304 32692489 -88565041 + B2_Mm2 SINE B2 2 192 -3 3 834 26 82 0 0 chr12 32692570 32692631 -88564899 + AT_rich Low_complexity Low_complexity 1 61 0 3 834 706 233 155 5 chr12 32692639 32692833 -88564697 + ID_B1 SINE B4 1 223 -1 3 834 228 230 62 103 chr12 32693034 32693131 -88564399 + RLTR25A LTR ERVK 490 582 -521 3 834 499 191 11 0 chr12 32693072 32693166 -88564364 + B1_Mur4 SINE Alu 48 142 -8 3 834 261 83 0 0 chr12 32693168 32693204 -88564326 + (CAT)n Simple_repeat Simple_repeat 1 36 0 3 834 486 182 121 0 chr12 32693667 32693766 -88563764 + B1_Mur2 SINE Alu 1 111 -38 3 834 1112 22 0 53 chr12 32694028 32694218 -88563312 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 834 284 280 46 9 chr12 32694976 32695084 -88562446 + L1MEf LINE L1 1310 1421 -5913 3 834 1101 206 88 4 chr12 32695316 32695579 -88561951 + B4A SINE B4 2 286 -6 3 834 233 212 15 15 chr12 32695659 32695726 -88561804 + L1MEf LINE L1 1866 1932 -5170 3 834 715 303 51 66 chr12 32695839 32696299 -88561231 + RLTR11B LTR ERVK 2 467 -60 3 834 238 293 10 39 chr12 32696375 32696444 -88561086 + PB1D10 SINE Alu 18 87 -30 3 834 3305 29 37 0 chr12 32696444 32696826 -88560704 - MTA_Mm LTR MaLR 0 396 1 3 834 238 293 10 39 chr12 32696826 32696859 -88560671 + PB1D10 SINE Alu 88 117 0 3 834 415 265 118 74 chr12 32696960 32697129 -88560401 + L1MEf LINE L1 2239 2418 -4684 3 834 261 0 0 0 chr12 32697129 32697158 -88560372 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 834 415 309 67 56 chr12 32697158 32697326 -88560204 + L1MEf LINE L1 2386 2558 -4544 3 834 623 234 123 15 chr12 32697327 32697672 -88559858 + L1MB3 LINE L1 5207 5582 -598 3 834 979 31 0 15 chr12 32697710 32697843 -88559687 + (CCCCAG)n Simple_repeat Simple_repeat 1 131 0 3 834 1058 241 80 16 chr12 32697844 32698156 -88559374 + ORR1E LTR MaLR 28 359 0 3 834 1226 279 114 16 chr12 32698181 32698680 -88558850 + L1MB3 LINE L1 5609 6156 -27 3 834 656 285 29 48 chr12 32698704 32698914 -88558616 + ID_B1 SINE B4 8 213 -11 3 834 381 258 309 27 chr12 32698914 32699137 -88558393 + B4 SINE B4 2 287 -5 3 834 401 309 40 0 chr12 32699641 32699767 -88557763 + B1F1 SINE Alu 11 141 -8 3 834 21 36 0 0 chr12 32700887 32700915 -88556615 + AT_rich Low_complexity Low_complexity 1 28 0 3 834 688 286 6 0 chr12 32700979 32701140 -88556390 + B3A SINE B2 1 162 -36 3 834 426 69 0 0 chr12 32701148 32701206 -88556324 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 834 205 88 29 0 chr12 32701959 32701993 -88555537 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 834 860 146 20 20 chr12 32703749 32703896 -88553634 - B1_Mus2 SINE Alu 0 147 1 3 834 268 303 69 69 chr12 32704189 32704480 -88553050 + RMER10A LTR ERVL 127 417 -25 3 834 7466 38 34 3 chr12 32705215 32706313 -88551217 - L1Md_F2 LINE L1 -6 6576 5429 3 834 59 46 0 0 chr12 32707053 32707140 -88550390 + AT_rich Low_complexity Low_complexity 1 87 0 3 834 2928 145 106 68 chr12 32707275 32707880 -88549650 - RMER1B Other Other -5 1061 434 3 834 698 204 35 7 chr12 32708171 32708314 -88549216 + B1_Mur1 SINE Alu 3 149 0 3 834 476 246 76 49 chr12 32708903 32708933 -88548597 + ID SINE ID 35 58 -166 3 834 212 100 0 24 chr12 32708933 32708974 -88548556 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 834 476 246 76 49 chr12 32708974 32709127 -88548403 + ID_B1 SINE B4 59 223 -1 3 834 5761 34 0 0 chr12 32709802 32710470 -88547060 + L1Md_F2 LINE L1 5913 6580 -2 3 834 2950 107 50 22 chr12 32710820 32711317 -88546213 - RMER13A LTR ERVK -349 511 1 3 834 364 284 0 0 chr12 32711318 32711420 -88546110 - PB1D7 SINE Alu -16 104 3 3 834 564 15 0 0 chr12 32711990 32712055 -88545475 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 834 3310 8 0 3 chr12 32712887 32713255 -88544275 + IAPLTR1_Mm LTR ERVK 1 367 0 3 834 21638 34 42 4 chr12 32713255 32715826 -88541704 + IAPEz-int LTR ERVK 8 2674 -3807 3 834 9624 23 3 1 chr12 32715801 32716881 -88540649 + IAPEz-int LTR ERVK 5400 6481 0 3 834 3310 8 0 3 chr12 32716881 32717249 -88540281 + IAPLTR1_Mm LTR ERVK 1 367 0 3 834 1214 35 14 0 chr12 32717370 32717515 -88540015 + B1_Mus1 SINE Alu 2 148 0 3 834 459 52 0 0 chr12 32717515 32717573 -88539957 + (GAGAA)n Simple_repeat Simple_repeat 2 59 0 3 834 237 171 25 52 chr12 32718323 32718414 -88539116 + Charlie10 DNA MER1_type 2734 2818 -4 3 834 195 0 86 0 chr12 32719768 32719803 -88537727 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 834 182 191 21 0 chr12 32720134 32720181 -88537349 + GA-rich Low_complexity Low_complexity 1 48 0 3 834 626 162 239 39 chr12 32720218 32720398 -88537132 + B3 SINE B2 1 216 0 3 834 724 183 122 30 chr12 32720862 32721059 -88536471 + B3 SINE B2 2 216 0 3 834 23 54 0 0 chr12 32723624 32723661 -88533869 + AT_rich Low_complexity Low_complexity 1 37 0 3 834 397 259 90 22 chr12 32724781 32724915 -88532615 + B1_Mur1 SINE Alu 1 143 -6 3 834 405 0 0 0 chr12 32725045 32725090 -88532440 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 834 244 111 0 0 chr12 32725143 32725179 -88532351 - U6 snRNA snRNA -71 36 1 3 834 262 305 73 128 chr12 32725714 32725932 -88531598 - B4 SINE B4 -58 234 29 3 834 257 339 33 8 chr12 32725948 32726070 -88531460 + MER20B DNA MER1_type 202 326 -457 3 834 381 348 14 7 chr12 32726081 32726223 -88531307 + RSINE1 SINE B4 10 152 -13 3 834 396 0 0 0 chr12 32726228 32726272 -88531258 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 834 348 211 107 27 chr12 32726383 32726495 -88531035 + RLTR15 LTR ERVK 1 121 -238 3 834 276 216 80 56 chr12 32726629 32726791 -88530739 + RLTR15 LTR ERVK 177 342 -17 3 834 474 18 0 0 chr12 32726802 32726857 -88530673 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 834 243 259 338 60 chr12 32728055 32728251 -88529279 + B4A SINE B4 1 251 -41 3 834 476 303 40 46 chr12 32728254 32728717 -88528813 + RLTR15 LTR ERVK 1 329 -30 3 834 533 94 12 0 chr12 32729839 32729924 -88527606 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 834 201 108 0 0 chr12 32730827 32730864 -88526666 + (A)n Simple_repeat Simple_repeat 1 37 0 3 834 369 0 0 0 chr12 32732121 32732162 -88525368 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 3 834 370 275 100 0 chr12 32732522 32732642 -88524888 - L1M5 LINE L1 -342 5822 5691 3 834 269 300 0 0 chr12 32732837 32732907 -88524623 - L1M5 LINE L1 -971 5473 5404 3 834 255 296 99 23 chr12 32733118 32733339 -88524191 + L1MD LINE L1 4463 4700 -1446 3 834 807 99 283 0 chr12 32733496 32733648 -88523882 + B2_Mm2 SINE B2 1 195 0 3 834 276 222 234 15 chr12 32733754 32733955 -88523575 - Charlie1 DNA MER1_type 0 2781 2537 3 834 287 308 131 0 chr12 32734151 32734281 -88523249 - Charlie1 DNA MER1_type -2621 160 14 3 834 30 0 0 0 chr12 32735363 32735393 -88522137 + AT_rich Low_complexity Low_complexity 1 30 0 3 834 3222 70 2 0 chr12 32735977 32736376 -88521154 - MTB LTR MaLR 0 400 1 3 834 346 119 0 0 chr12 32737138 32737197 -88520333 + B1_Mur4 SINE Alu 2 60 -90 3 834 231 189 0 0 chr12 32738846 32738899 -88518631 + GA-rich Low_complexity Low_complexity 2 54 0 3 834 222 37 0 0 chr12 32739207 32739234 -88518296 + (T)n Simple_repeat Simple_repeat 1 27 0 3 834 405 0 0 0 chr12 32739406 32739451 -88518079 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 834 274 309 62 0 chr12 32740084 32740181 -88517349 - MIR SINE MIR -10 252 150 3 834 986 214 34 10 chr12 32740319 32740527 -88517003 + B3 SINE B2 1 213 -3 3 834 314 214 96 10 chr12 32740714 32740818 -88516712 + ID_B1 SINE B4 81 193 -31 3 834 468 124 82 45 chr12 32740730 32740840 -88516690 + B1_Mus1 SINE Alu 18 131 -17 3 834 243 311 112 21 chr12 32741239 32741426 -88516104 + Lx8 LINE L1 7265 7468 -5 3 834 208 121 0 0 chr12 32741565 32741598 -88515932 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 3 834 258 32 0 0 chr12 32741610 32741641 -88515889 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 834 297 0 0 0 chr12 32742169 32742202 -88515328 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 834 239 217 0 0 chr12 32743455 32743501 -88514029 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 834 264 194 0 43 chr12 32746149 32746219 -88511311 + C-rich Low_complexity Low_complexity 6 72 0 3 834 21 82 0 0 chr12 32747031 32747080 -88510450 + AT_rich Low_complexity Low_complexity 1 49 0 3 834 339 44 0 0 chr12 32748155 32748200 -88509330 + (T)n Simple_repeat Simple_repeat 1 45 0 3 834 181 318 16 0 chr12 32748268 32748331 -88509199 + L3 LINE CR1 4387 4450 -39 3 834 1133 75 0 7 chr12 32749330 32749477 -88508053 + B1_Mm SINE Alu 2 147 0 3 834 211 326 93 20 chr12 32749609 32749759 -88507771 - MER5A DNA MER1_type -1 188 28 3 834 344 133 132 0 chr12 32749779 32749855 -88507675 + B1_Mus1 SINE Alu 35 119 -1 3 834 826 289 44 19 chr12 32750166 32750506 -88507024 + L1MB2 LINE L1 5809 6170 -1 3 834 429 260 199 13 chr12 32750998 32751224 -88506306 + MLT1E1A LTR MaLR 4 271 -409 3 834 230 341 152 28 chr12 32751253 32751464 -88506066 + L2 LINE L2 2103 2339 -1080 3 834 405 291 110 54 chr12 32752836 32753175 -88504355 - MLT1B LTR MaLR -4 386 25 3 834 375 106 0 0 chr12 32753349 32753415 -88504115 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 834 189 121 0 0 chr12 32753857 32753890 -88503640 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 3 834 2444 84 8 40 chr12 32753914 32754288 -88503242 - Lx2 LINE L1 0 6997 6636 3 834 235 330 0 57 chr12 32754528 32754634 -88502896 - MIR3 SINE MIR -53 155 56 3 834 216 321 19 0 chr12 32755077 32755130 -88502400 - ID4_ SINE ID -3 80 27 3 834 420 306 0 40 chr12 32755171 32755321 -88502209 - ID_B1 SINE B4 -2 222 79 4 834 1125 96 72 17 chr12 32756550 32756568 -88500962 - B2_Mm1a SINE B2 -3 190 162 4 834 180 0 0 0 chr12 32756568 32756588 -88500942 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 4 834 1125 96 72 17 chr12 32756588 32756749 -88500781 - B2_Mm1a SINE B2 -32 161 2 4 834 243 158 57 24 chr12 32757178 32757301 -88500229 - RMER17D LTR ERVK -381 508 382 4 834 1482 172 161 0 chr12 32757397 32757746 -88499784 - MTD LTR MaLR -14 405 1 4 834 270 136 0 0 chr12 32757825 32757869 -88499661 + (CAG)n Simple_repeat Simple_repeat 1 44 0 4 834 207 0 0 0 chr12 32758404 32758427 -88499103 + (A)n Simple_repeat Simple_repeat 1 23 0 4 834 399 252 94 75 chr12 32758479 32758638 -88498892 - U1 snRNA snRNA -2 163 2 4 834 180 0 0 0 chr12 32759402 32759422 -88498108 + (T)n Simple_repeat Simple_repeat 1 20 0 4 834 207 0 0 0 chr12 32760690 32760713 -88496817 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 834 614 176 127 22 chr12 32761553 32761564 -88495966 - B1_Mus1 SINE Alu 0 148 140 4 834 201 74 0 0 chr12 32761564 32761591 -88495939 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 834 614 176 127 22 chr12 32761591 32761713 -88495817 - B1_Mus1 SINE Alu -9 139 1 4 834 214 307 51 34 chr12 32761715 32761833 -88495697 - PB1D7 SINE Alu 0 120 1 4 834 267 293 0 42 chr12 32761744 32761840 -88495690 - ID_B1 SINE B4 -55 169 78 4 834 2267 147 42 15 chr12 32761953 32762354 -88495176 - MTC LTR MaLR -9 412 1 4 834 455 149 96 0 chr12 32763891 32763985 -88493545 + B1_Mur2 SINE Alu 47 149 0 4 834 274 288 51 43 chr12 32764462 32764600 -88492930 - MIR SINE MIR -30 232 94 4 834 1938 169 115 47 chr12 32765104 32765318 -88492212 + RLTR24 LTR ERV1 1 229 -300 4 834 1437 217 79 55 chr12 32765318 32765811 -88491719 - RLTR16 LTR ERVK 0 505 1 4 834 1938 169 115 47 chr12 32765811 32766091 -88491439 + RLTR24 LTR ERV1 230 528 -1 4 834 556 259 34 11 chr12 32766249 32766425 -88491105 - Ricksha DNA MuDR -2 3244 3065 4 834 2047 160 25 66 chr12 32766448 32766768 -88490762 + ORR1C1 LTR MaLR 1 301 -77 4 834 605 211 78 0 chr12 32766768 32766896 -88490634 + B1_Mur3 SINE Alu 3 140 -9 4 834 2047 160 25 66 chr12 32766896 32766969 -88490561 + ORR1C1 LTR MaLR 302 378 0 4 834 346 280 0 0 chr12 32766969 32767044 -88490486 + B4A SINE B4 43 117 -175 4 834 315 294 97 10 chr12 32767049 32767152 -88490378 + B3A SINE B2 62 173 -25 4 834 243 128 0 0 chr12 32767159 32767198 -88490332 + ORR1D1 LTR MaLR 4 42 -332 4 834 1495 208 55 52 chr12 32767202 32767659 -88489871 + RLTR20B3 LTR ERVK 24 481 -96 4 834 192 125 0 0 chr12 32767677 32767709 -88489821 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 834 385 193 45 0 chr12 32767709 32767797 -88489733 + RLTR20B3 LTR ERVK 457 548 -15 4 104 1054 209 137 57 chr12 32767801 32768115 -88489415 + ORR1D1 LTR MaLR 36 374 0 4 835 338 257 0 13 chr12 32768143 32768218 -88489312 + B1_Mur3 SINE Alu 2 75 -74 4 835 549 251 99 11 chr12 32768319 32768500 -88489030 - Ricksha DNA MuDR -1148 2098 1902 4 835 274 277 11 11 chr12 32768631 32768726 -88488804 - Ricksha DNA MuDR -3065 181 87 4 835 233 368 34 34 chr12 32768931 32769080 -88488450 + MLT1K LTR MaLR 335 483 -112 4 835 1470 188 27 27 chr12 32769141 32769479 -88488051 - RMER20A LTR ERVK -21 495 158 4 835 427 195 0 0 chr12 32769491 32769568 -88487962 - RMER20A LTR ERVK -429 87 11 4 835 304 176 191 0 chr12 32770482 32770550 -88486980 - ID4 SINE ID -2 81 1 4 835 563 102 11 0 chr12 32770570 32770658 -88486872 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 835 237 254 29 29 chr12 32771062 32771131 -88486399 + MER58D DNA MER1_type 318 386 0 4 835 181 328 0 0 chr12 32772017 32772075 -88485455 + MIR SINE MIR 93 150 -112 4 835 565 241 101 38 chr12 32773262 32773529 -88484001 - Charlie1b DNA MER1_type -7 516 233 4 835 1772 144 96 21 chr12 32774569 32774946 -88482584 + RLTR44A LTR ERVK 1 405 0 4 835 585 138 43 0 chr12 32774946 32775040 -88482490 + RLTR44-int LTR ERVK 1 98 -2714 4 835 5112 70 21 3 chr12 32775061 32775746 -88481784 + RLTR44-int LTR ERVK 816 1489 -1323 4 835 4777 35 53 0 chr12 32776042 32776611 -88480919 + RLTR44-int LTR ERVK 2214 2812 0 4 835 1860 154 111 19 chr12 32776611 32776982 -88480548 + RLTR44A LTR ERVK 1 405 0 4 835 457 195 44 66 chr12 32777330 32777467 -88480063 - B1F SINE Alu 0 149 16 4 835 396 0 0 0 chr12 32778480 32778524 -88479006 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 835 2028 212 122 21 chr12 32778971 32779487 -88478043 - RLTR20D LTR ERVK 0 568 1 4 835 864 163 0 7 chr12 32780346 32780494 -88477036 - B1_Mus1 SINE Alu 0 148 2 4 835 337 139 63 0 chr12 32780496 32780516 -88477014 + polypyrimidine Low_complexity Low_complexity 65 87 0 4 835 1208 94 0 11 chr12 32780516 32780698 -88476832 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 835 337 139 63 0 chr12 32780698 32780756 -88476774 + polypyrimidine Low_complexity Low_complexity 5 64 0 4 835 1934 118 97 3 chr12 32781152 32781451 -88476079 - ORR1A2 LTR MaLR 0 327 1 4 835 23 0 0 0 chr12 32781478 32781501 -88476029 + AT_rich Low_complexity Low_complexity 1 23 0 4 835 252 0 0 0 chr12 32782535 32782563 -88474967 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 835 526 175 78 0 chr12 32782563 32782666 -88474864 - PB1D9 SINE Alu -9 111 1 4 835 440 231 10 0 chr12 32783026 32783130 -88474400 + MLT1A LTR MaLR 255 359 -15 4 835 198 47 93 0 chr12 32783893 32783936 -88473594 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 835 31 44 0 0 chr12 32783981 32784026 -88473504 + AT_rich Low_complexity Low_complexity 1 45 0 4 835 1104 72 0 0 chr12 32784029 32784167 -88473363 + B1_Mus1 SINE Alu 2 139 -9 4 835 207 0 0 0 chr12 32784167 32784190 -88473340 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 835 510 17 0 0 chr12 32785054 32785113 -88472417 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 835 249 271 46 23 chr12 32785115 32785202 -88472328 - RSINE1 SINE B4 -48 117 29 4 835 225 284 83 10 chr12 32785257 32785353 -88472177 + PB1D7 SINE Alu 10 112 -8 4 835 21 0 0 0 chr12 32785771 32785792 -88471738 + AT_rich Low_complexity Low_complexity 1 21 0 4 835 1378 229 60 0 chr12 32785973 32786274 -88471256 + Lx5 LINE L1 6728 7046 -4 4 835 420 20 0 0 chr12 32786814 32786863 -88470667 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 835 424 94 31 0 chr12 32786863 32786927 -88470603 + B3 SINE B2 61 126 -90 4 835 216 0 0 0 chr12 32786970 32786994 -88470536 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4 835 324 243 0 14 chr12 32787969 32788040 -88469490 - ID4 SINE ID -11 72 3 4 835 250 329 12 12 chr12 32788040 32788120 -88469410 - PB1D10 SINE Alu -37 80 1 4 835 189 0 0 0 chr12 32789753 32789774 -88467756 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 835 632 245 7 13 chr12 32790009 32790158 -88467372 - B1F SINE Alu 0 149 2 4 835 423 0 0 0 chr12 32790161 32790208 -88467322 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 835 477 289 52 52 chr12 32790395 32790643 -88466887 + MLT1J LTR MaLR 265 512 0 4 835 27 0 0 0 chr12 32791355 32791382 -88466148 + AT_rich Low_complexity Low_complexity 1 27 0 4 835 3171 39 36 8 chr12 32791423 32791808 -88465722 + MTA_Mm LTR MaLR 1 396 0 4 835 710 93 9 0 chr12 32792599 32792707 -88464823 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 4 835 553 297 27 7 chr12 32792829 32793002 -88464528 + B3A SINE B2 2 170 -23 4 835 772 263 38 0 chr12 32793006 32793192 -88464338 + B3A SINE B2 2 194 -4 4 835 288 296 114 48 chr12 32793526 32793693 -88463837 - MLT1J LTR MaLR -331 181 4 4 835 201 94 0 0 chr12 32794769 32794801 -88462729 + (T)n Simple_repeat Simple_repeat 1 32 0 4 835 356 228 0 12 chr12 32794917 32794997 -88462533 - ID4_ SINE ID -3 80 2 4 835 440 274 0 0 chr12 32795034 32795136 -88462394 - MTEa LTR MaLR -56 323 222 4 835 441 250 32 32 chr12 32795169 32795293 -88462237 - ID_B1 SINE B4 -10 214 91 4 835 224 303 52 22 chr12 32795402 32795537 -88461993 + MIR SINE MIR 17 155 -107 4 835 1133 54 7 0 chr12 32796131 32796280 -88461250 + (GGGAGA)n Simple_repeat Simple_repeat 2 151 0 4 835 198 0 0 0 chr12 32796808 32796830 -88460700 + (T)n Simple_repeat Simple_repeat 1 22 0 4 835 380 209 56 28 chr12 32797165 32797273 -88460257 + L1MC4a LINE L1 7100 7210 -672 4 835 447 19 0 0 chr12 32797380 32797432 -88460098 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 835 1081 279 33 30 chr12 32797454 32797880 -88459650 + L1MC4a LINE L1 7269 7695 -187 4 835 307 316 81 35 chr12 32798432 32798629 -88458901 + LTR16E2 LTR ERVL 361 566 -2 4 835 22 35 0 0 chr12 32798989 32799018 -88458512 + AT_rich Low_complexity Low_complexity 1 29 0 4 835 232 264 0 36 chr12 32799020 32799075 -88458455 - PB1D10 SINE Alu -12 105 53 4 835 569 110 11 0 chr12 32799083 32799174 -88458356 + (TCC)n Simple_repeat Simple_repeat 2 93 0 4 835 212 381 0 0 chr12 32799593 32799677 -88457853 - L2a LINE L2 -5 3421 3338 4 835 868 231 14 39 chr12 32799772 32799979 -88457551 + B3 SINE B2 1 202 -14 4 835 402 240 10 20 chr12 32800409 32800511 -88457019 + PB1D10 SINE Alu 17 117 0 4 835 389 261 199 19 chr12 32800513 32800669 -88456861 + B3A SINE B2 2 185 -13 4 835 786 297 69 42 chr12 32800778 32801105 -88456425 + MTEb LTR MaLR 19 379 0 4 835 610 259 7 26 chr12 32801439 32801590 -88455940 - B1F SINE Alu -1 148 1 4 835 30856 113 27 1 chr12 32801917 32807775 -88449755 + L1_Mus3 LINE L1 632 6638 0 4 835 298 89 12 71 chr12 32808394 32808479 -88449051 + (CAAA)n Simple_repeat Simple_repeat 2 81 0 4 835 408 130 0 0 chr12 32811138 32811207 -88446323 + (TCC)n Simple_repeat Simple_repeat 1 69 0 4 835 236 331 125 0 chr12 32811682 32811818 -88445712 - L1MA4A LINE L1 -364 5939 5787 4 835 303 339 63 48 chr12 32812050 32812239 -88445291 - HAL1 LINE L1 -604 1903 1712 4 835 366 216 18 0 chr12 32813342 32813429 -88444101 - PB1D10 SINE Alu -58 91 1 4 835 219 146 0 0 chr12 32815669 32815710 -88441820 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 835 1097 116 0 6 chr12 32816472 32816561 -88440969 + (TTC)n Simple_repeat Simple_repeat 3 91 0 4 835 1434 33 0 0 chr12 32816561 32816741 -88440789 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 835 1097 116 0 6 chr12 32816741 32816825 -88440705 + (TTC)n Simple_repeat Simple_repeat 3 86 0 5 835 813 172 106 25 chr12 32818654 32818815 -88438715 + MTD LTR MaLR 1 174 -245 5 835 825 128 15 0 chr12 32818860 32818993 -88438537 + B1_Mus2 SINE Alu 2 136 -11 5 835 883 170 111 25 chr12 32819006 32819205 -88438325 + MTD LTR MaLR 196 411 -8 5 835 315 0 0 0 chr12 32819729 32819764 -88437766 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 835 328 309 124 7 chr12 32819901 32819918 -88437612 + B4 SINE B4 69 101 -191 5 835 648 179 62 28 chr12 32819918 32820062 -88437468 + B1_Mur3 SINE Alu 1 149 0 5 835 891 132 161 16 chr12 32820214 32820406 -88437124 - URR1A DNA MER1_type -6 220 1 5 835 242 73 0 24 chr12 32821485 32821527 -88436003 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 835 540 0 0 0 chr12 32821527 32821586 -88435944 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 835 22 35 0 0 chr12 32821793 32821822 -88435708 + AT_rich Low_complexity Low_complexity 1 29 0 5 835 937 137 7 7 chr12 32821886 32822026 -88435504 - B1_Mus1 SINE Alu -5 143 4 5 835 933 176 0 0 chr12 32822026 32822202 -88435328 + CT-rich Low_complexity Low_complexity 3 178 0 5 835 204 179 0 0 chr12 32822205 32822244 -88435286 + T-rich Low_complexity Low_complexity 1 39 0 5 835 1978 166 26 47 chr12 32822294 32822680 -88434850 - ORR1C1 LTR MaLR 0 378 1 5 835 526 282 126 7 chr12 32822693 32823003 -88434527 - Lx9 LINE L1 -76 7568 7222 5 835 180 111 0 0 chr12 32824359 32824386 -88433144 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 5 835 860 206 20 20 chr12 32824903 32825101 -88432429 - B3A SINE B2 0 198 1 5 835 751 232 81 20 chr12 32825543 32825741 -88431789 + B3 SINE B2 1 210 -6 5 835 23 0 0 0 chr12 32825746 32825769 -88431761 + AT_rich Low_complexity Low_complexity 1 23 0 5 835 711 0 0 0 chr12 32826213 32826292 -88431238 + (TTCTC)n Simple_repeat Simple_repeat 3 81 0 5 835 317 27 0 0 chr12 32826292 32826329 -88431201 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 5 835 507 73 0 0 chr12 32826329 32826397 -88431133 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 5 835 189 0 0 0 chr12 32826888 32826909 -88430621 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 835 420 324 97 53 chr12 32827041 32827383 -88430147 - L2 LINE L2 -823 2596 2240 5 835 295 149 111 69 chr12 32828041 32828113 -88429417 - RLTR18B LTR ERVK -41 471 397 5 835 832 168 20 61 chr12 32828105 32828302 -88429228 - RLTR18B LTR ERVK -323 189 1 5 835 303 203 78 0 chr12 32828730 32828794 -88428736 + HAL1-3A_ME LINE L1 1952 2020 -838 5 835 681 249 94 14 chr12 32828876 32829088 -88428442 - B4A SINE B4 -60 232 4 5 835 718 209 0 14 chr12 32829898 32830039 -88427491 + B1_Mus1 SINE Alu 3 141 -7 5 835 1001 146 11 0 chr12 32830066 32830244 -88427286 + GA-rich Low_complexity Low_complexity 1 180 0 5 835 503 322 118 68 chr12 32832249 32832589 -88424941 + ORR1E LTR MaLR 3 359 0 5 835 486 266 0 0 chr12 32832639 32832748 -88424782 - ID_B1 SINE B4 -35 189 81 5 835 514 240 0 10 chr12 32832751 32832852 -88424678 - PB1D10 SINE Alu -1 116 17 5 835 470 17 17 0 chr12 32833114 32833173 -88424357 + (TATG)n Simple_repeat Simple_repeat 3 62 0 5 835 961 221 97 104 chr12 32833205 32833291 -88424239 - B4A SINE B4 -2 290 222 5 835 836 246 24 9 chr12 32833291 32833504 -88424026 - B3 SINE B2 0 216 1 5 835 961 221 97 104 chr12 32833504 32833705 -88423825 - B4A SINE B4 -71 221 5 5 835 735 206 7 54 chr12 32834313 32834462 -88423068 + B1_Mur1 SINE Alu 2 143 -6 5 835 272 204 174 0 chr12 32834464 32834562 -88422968 - L1MB8 LINE L1 -14 6164 6050 5 835 18175 57 40 63 chr12 32834569 32835627 -88421903 - MusHAL1 LINE L1 0 3353 2304 5 835 600 14 0 0 chr12 32835627 32835696 -88421834 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 5 835 978 93 0 0 chr12 32835696 32835834 -88421696 + (TTTC)n Simple_repeat Simple_repeat 3 141 0 5 835 18175 57 40 63 chr12 32835834 32836486 -88421044 - MusHAL1 LINE L1 -1050 2303 1583 5 835 504 117 0 0 chr12 32836486 32836563 -88420967 + (TTCA)n Simple_repeat Simple_repeat 2 78 0 5 835 885 73 0 0 chr12 32836563 32836686 -88420844 - B1_Mus1 SINE Alu -25 123 1 5 835 401 179 8 111 chr12 32836573 32836699 -88420831 - MT2B LTR ERVL -337 264 152 5 835 18175 69 28 45 chr12 32836686 32838251 -88419279 - MusHAL1 LINE L1 -1771 1582 21 5 835 521 267 162 44 chr12 32838244 32838565 -88418965 - L1MB8 LINE L1 -119 6059 5701 5 835 1257 192 51 159 chr12 32838604 32838624 -88418906 - ORR1C2 LTR MaLR -14 370 354 5 835 1754 149 40 31 chr12 32838624 32838950 -88418580 - ORR1A4 LTR MaLR 0 329 1 5 835 1257 192 51 159 chr12 32838950 32839344 -88418186 - ORR1C2 LTR MaLR -31 353 1 5 835 365 273 132 7 chr12 32839344 32839699 -88417831 - L1MB8 LINE L1 -517 5661 5212 5 835 1022 202 44 25 chr12 32839728 32839931 -88417599 + B3 SINE B2 5 211 -5 5 835 416 182 38 25 chr12 32839959 32840038 -88417492 - B1_Mus2 SINE Alu -9 138 59 5 835 1072 285 166 8 chr12 32840073 32840738 -88416792 - L1MB8 LINE L1 -933 5213 4435 5 835 3455 35 2 0 chr12 32840738 32841133 -88416397 + MTA_Mm LTR MaLR 1 396 0 5 835 1072 285 166 8 chr12 32841133 32841185 -88416345 - L1MB8 LINE L1 -1712 4434 4383 5 835 983 90 7 0 chr12 32841187 32841331 -88416199 + (TTTTC)n Simple_repeat Simple_repeat 1 145 0 5 835 571 53 0 0 chr12 32841333 32841409 -88416121 - BC1_Mm scRNA scRNA -76 76 1 5 835 232 139 0 0 chr12 32841413 32841456 -88416074 - L1MB8 LINE L1 -1766 4380 4338 5 835 285 300 92 0 chr12 32842710 32842840 -88414690 + MLT1A0 LTR MaLR 2 143 -222 5 835 395 223 115 9 chr12 32842830 32842943 -88414587 - B1_Mur1 SINE Alu -1 148 24 5 835 977 219 29 10 chr12 32842947 32843154 -88414376 + B3 SINE B2 1 211 -5 5 835 937 102 58 14 chr12 32843277 32843416 -88414114 + B1_Mur2 SINE Alu 3 147 -2 5 835 311 0 0 25 chr12 32844175 32844215 -88413315 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 835 950 120 0 0 chr12 32844217 32844350 -88413180 - B1_Mur3 SINE Alu -16 133 1 5 835 757 256 37 78 chr12 32846560 32846919 -88410611 - RLTR11A2 LTR ERVK -122 331 1 5 835 2304 88 3 0 chr12 32847280 32847599 -88409931 + ORR1A2 LTR MaLR 8 327 0 5 835 2556 177 50 4 chr12 32848031 32848535 -88408995 + RLTR11A2 LTR ERVK 1 527 0 5 835 280 262 62 0 chr12 32848915 32848995 -88408535 - MLT1F2 LTR MaLR 0 560 476 5 835 253 366 59 71 chr12 32849207 32849445 -88408085 - MLT1F2 LTR MaLR -272 297 63 5 835 396 324 9 0 chr12 32849906 32850017 -88407513 - MT2A LTR ERVL -120 413 302 5 835 949 148 0 0 chr12 32850163 32850298 -88407232 + B1_Mus1 SINE Alu 2 136 -12 5 835 369 0 35 35 chr12 32850300 32850358 -88407172 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 5 835 333 295 15 8 chr12 32850700 32850833 -88406697 + L1ME1 LINE L1 5844 5977 -202 5 835 1176 163 20 0 chr12 32850870 32851072 -88406458 + B3 SINE B2 10 215 -1 5 835 316 333 6 47 chr12 32851092 32851262 -88406268 + L1ME1 LINE L1 5997 6159 -285 5 835 1173 204 18 14 chr12 32851925 32851951 -88405579 - L1Md_T LINE L1 -715 5867 5842 5 835 5917 178 40 8 chr12 32851951 32853023 -88404507 - Lx5 LINE L1 -3 7047 5941 5 835 3508 127 8 2 chr12 32853023 32853547 -88403983 - L1Md_T LINE L1 -741 5841 5309 5 835 261 0 0 0 chr12 32853864 32853893 -88403637 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 835 429 156 35 97 chr12 32854783 32854898 -88402632 + B1F1 SINE Alu 23 128 -21 5 835 225 0 0 0 chr12 32854898 32854923 -88402607 + (TAAAAA)n Simple_repeat Simple_repeat 1 25 0 5 835 288 0 0 0 chr12 32855022 32855054 -88402476 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 835 658 245 78 20 chr12 32855109 32855313 -88402217 - ID_B1 SINE B4 -7 217 2 5 835 22 0 0 0 chr12 32855417 32855439 -88402091 + AT_rich Low_complexity Low_complexity 1 22 0 5 835 329 261 41 98 chr12 32855439 32855562 -88401968 - B4A SINE B4 -1 291 176 5 835 721 291 29 51 chr12 32855567 32855882 -88401648 + RLTR18 LTR ERVK 8 315 -301 5 835 658 308 32 70 chr12 32855927 32856241 -88401289 + RLTR18B LTR ERVK 192 493 -19 5 835 618 274 32 43 chr12 32856261 32856448 -88401082 - B4A SINE B4 -107 185 1 5 835 554 284 117 73 chr12 32856894 32857263 -88400267 - MLT1C LTR MaLR -3 464 3 5 835 441 0 0 0 chr12 32857323 32857372 -88400158 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 835 863 286 30 66 chr12 32857436 32857739 -88399791 + B4A SINE B4 1 292 0 5 835 450 0 0 0 chr12 32857819 32857869 -88399661 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 835 1418 272 52 18 chr12 32858436 32858878 -88398652 + Lx8 LINE L1 6802 7258 -215 5 835 27 29 0 0 chr12 32860488 32860522 -88397008 + AT_rich Low_complexity Low_complexity 1 34 0 5 835 504 0 0 0 chr12 32862199 32862255 -88395275 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 5 835 680 213 14 14 chr12 32862395 32862538 -88394992 + B1F SINE Alu 1 143 -6 5 835 31 0 0 0 chr12 32863003 32863034 -88394496 + AT_rich Low_complexity Low_complexity 1 31 0 5 835 867 283 28 38 chr12 32863189 32863479 -88394051 - B4A SINE B4 0 292 6 5 835 742 127 163 48 chr12 32863670 32863810 -88393720 + B2_Mm2 SINE B2 1 160 -35 5 835 180 0 0 0 chr12 32863810 32863830 -88393700 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 835 742 127 163 48 chr12 32863830 32863855 -88393675 + B2_Mm2 SINE B2 161 185 -10 5 835 619 205 8 8 chr12 32864110 32864238 -88393292 + B3 SINE B2 1 128 -88 5 835 247 119 48 0 chr12 32864978 32865020 -88392510 + L1ME1 LINE L1 6090 6133 -46 5 835 1227 35 0 0 chr12 32865073 32865214 -88392316 + B1_Mus1 SINE Alu 3 143 -5 5 835 3189 78 5 18 chr12 32865340 32865784 -88391746 + L1_Mus3 LINE L1 6193 6630 -8 5 835 807 11 0 0 chr12 32865801 32865893 -88391637 + (GAA)n Simple_repeat Simple_repeat 3 94 0 5 835 497 324 115 24 chr12 32866086 32866374 -88391156 - ORR1E LTR MaLR -9 350 37 5 835 210 366 0 0 chr12 32867583 32867665 -88389865 + MIR SINE MIR 109 190 -72 5 835 23 0 0 0 chr12 32868808 32868831 -88388699 + AT_rich Low_complexity Low_complexity 1 23 0 5 835 5478 72 0 6 chr12 32869130 32869841 -88387689 + L1Md_F2 LINE L1 5876 6582 0 5 835 206 229 0 0 chr12 32869881 32869929 -88387601 + CT-rich Low_complexity Low_complexity 1 48 0 5 835 504 0 0 0 chr12 32872295 32872351 -88385179 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 835 660 12 0 0 chr12 32872392 32872473 -88385057 + L1Md_T LINE L1 6500 6580 -2 5 835 362 283 26 0 chr12 32873473 32873586 -88383944 + PB1D9 SINE Alu 5 120 0 6 835 252 59 0 0 chr12 32874278 32874312 -88383218 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 835 226 125 20 20 chr12 32874319 32874368 -88383162 + GA-rich Low_complexity Low_complexity 4 52 0 6 835 979 99 305 28 chr12 32874830 32875007 -88382523 - URR1A DNA MER1_type 0 226 1 6 835 247 279 168 24 chr12 32875128 32875253 -88382277 - MIRb SINE MIR -113 155 13 6 835 198 118 0 0 chr12 32877361 32877395 -88380135 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 6 835 442 262 9 9 chr12 32877762 32877870 -88379660 - PB1D10 SINE Alu -7 110 3 6 835 504 257 7 0 chr12 32878301 32878437 -88379093 + L1MB3 LINE L1 6044 6180 -3 6 835 186 264 19 0 chr12 32882306 32882359 -88375171 + L3 LINE CR1 3561 3614 -875 6 835 297 318 128 11 chr12 32882907 32883320 -88374210 + L1MEc LINE L1 1317 1789 -4611 6 835 686 190 0 8 chr12 32887714 32887836 -88369694 - Lx8 LINE L1 -706 6767 6647 6 835 1041 293 85 27 chr12 32887836 32888211 -88369319 + Lx8 LINE L1 7077 7473 0 6 835 220 357 37 42 chr12 32888315 32888505 -88369025 + MIRm SINE MIR 17 207 -61 6 835 426 39 0 0 chr12 32891186 32891238 -88366292 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 835 315 289 40 24 chr12 32891260 32891384 -88366146 + B4A SINE B4 1 126 -166 6 835 291 331 34 48 chr12 32891384 32891406 -88366124 + B3A SINE B2 1 144 -54 6 835 247 43 85 0 chr12 32891426 32891473 -88366057 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 6 835 352 176 120 57 chr12 32891476 32891596 -88365934 + B4A SINE B4 114 237 -55 6 835 324 0 0 0 chr12 32893851 32893887 -88363643 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 835 297 0 0 0 chr12 32894064 32894097 -88363433 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 835 1095 260 94 12 chr12 32894507 32894846 -88362684 + MTE2b LTR MaLR 1 367 -12 6 835 252 0 0 0 chr12 32895087 32895115 -88362415 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 835 239 346 71 13 chr12 32897041 32897196 -88360334 - MIR SINE MIR -31 231 68 6 836 237 261 0 80 chr12 32899451 32899526 -88358004 - B3A SINE B2 -10 188 120 6 836 272 328 224 15 chr12 32900250 32900451 -88357079 + L1M3e LINE L1 38 280 -6750 6 836 1613 123 18 25 chr12 32901918 32902193 -88355337 - ORR1A4 LTR MaLR -56 273 1 6 836 272 343 168 32 chr12 32902374 32902553 -88354977 + L2 LINE L2 2102 2313 -1106 6 836 3512 18 5 0 chr12 32902553 32902947 -88354583 + MTA_Mm LTR MaLR 1 396 0 6 836 9236 32 9 1 chr12 32902947 32904036 -88353494 + MTA_Mm-int LTR MaLR 1 1098 0 6 836 3480 23 5 0 chr12 32904036 32904430 -88353100 + MTA_Mm LTR MaLR 1 396 0 6 836 272 343 168 32 chr12 32904430 32904558 -88352972 + L2 LINE L2 2314 2451 -968 6 836 249 301 153 66 chr12 32905691 32905965 -88351565 + ORR1E LTR MaLR 45 342 -17 6 836 1630 230 188 60 chr12 32905982 32906547 -88350983 + L1MA6 LINE L1 5148 5830 -470 6 836 747 204 325 0 chr12 32906547 32906753 -88350777 + B4 SINE B4 4 276 -16 6 836 1630 226 190 69 chr12 32906753 32906768 -88350762 + L1MA6 LINE L1 5831 5836 -464 6 836 384 22 0 0 chr12 32906768 32906813 -88350717 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 836 459 0 0 0 chr12 32906813 32906863 -88350667 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 836 183 42 0 0 chr12 32906863 32906886 -88350644 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 836 1630 226 190 69 chr12 32906886 32907321 -88350209 + L1MA6 LINE L1 5837 6294 -6 6 836 441 0 0 0 chr12 32908461 32908510 -88349020 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 836 312 127 0 0 chr12 32908510 32908564 -88348966 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 836 634 179 81 0 chr12 32909506 32909629 -88347901 + B1_Mur3 SINE Alu 17 149 0 6 836 448 256 32 24 chr12 32909877 32910001 -88347529 + ID_B1 SINE B4 82 206 -18 6 836 342 61 0 0 chr12 32910014 32910063 -88347467 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 836 43 47 0 0 chr12 32910450 32910514 -88347016 + AT_rich Low_complexity Low_complexity 1 64 0 6 836 708 138 0 0 chr12 32910515 32910631 -88346899 + (TA)n Simple_repeat Simple_repeat 1 116 0 6 836 570 283 59 0 chr12 32912022 32912174 -88345356 + ID_B1 SINE B4 1 161 -63 6 836 590 196 13 4 chr12 32913149 32913382 -88344148 + (TG)n Simple_repeat Simple_repeat 1 235 0 6 836 418 270 58 116 chr12 32913384 32913556 -88343974 - RSINE1 SINE B4 0 165 4 6 836 3444 23 5 2 chr12 32914700 32915095 -88342435 + MTA_Mm LTR MaLR 1 396 0 6 836 708 273 120 13 chr12 32915209 32915517 -88342013 + MER2 DNA MER2_type 5 345 0 6 836 298 180 131 0 chr12 32916079 32916140 -88341390 - ID4 SINE ID -14 69 1 6 836 324 255 2 117 chr12 32916656 32916786 -88340744 - Cheshire DNA MER1_type -2139 281 172 6 836 382 287 49 56 chr12 32917027 32917171 -88340359 - MLT1A1 LTR MaLR -12 396 254 6 836 194 247 138 38 chr12 32917425 32917505 -88340025 - L2a LINE L2 0 3426 3339 6 836 211 208 21 0 chr12 32917936 32917984 -88339546 - L2a LINE L2 -91 3335 3287 6 836 307 282 103 21 chr12 32918032 32918177 -88339353 - MER58B DNA MER1_type -1 340 184 6 836 736 340 29 47 chr12 32918215 32918493 -88339037 + B4 SINE B4 16 288 -4 6 836 261 0 0 0 chr12 32918514 32918543 -88338987 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 836 255 307 77 39 chr12 32919436 32919592 -88337938 - L1ME2 LINE L1 -9 6155 5994 6 836 844 164 7 0 chr12 32919705 32919845 -88337685 - B1_Mus1 SINE Alu -7 141 1 6 836 335 309 201 31 chr12 32919845 32920019 -88337511 + L2 LINE L2 1565 1792 -1627 6 836 243 0 0 0 chr12 32920019 32920046 -88337484 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 6 836 820 123 15 23 chr12 32920046 32920179 -88337351 - B1_Mus1 SINE Alu -14 134 3 6 836 335 309 201 31 chr12 32920179 32920491 -88337039 + L2 LINE L2 1793 2134 -1285 6 836 637 273 26 0 chr12 32920794 32920948 -88336582 + MTD LTR MaLR 150 307 -112 6 836 477 90 0 0 chr12 32921630 32921697 -88335833 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 6 836 786 171 0 0 chr12 32921697 32921837 -88335693 - B1_Mur3 SINE Alu 0 149 10 6 836 239 233 0 0 chr12 32921870 32921930 -88335600 - Lx9 LINE L1 -1 7643 7584 6 836 862 270 45 5 chr12 32921914 32921995 -88335535 + RMER1A Other Other 55 135 -895 6 836 266 0 0 29 chr12 32921995 32922030 -88335500 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 836 862 270 45 5 chr12 32922030 32922171 -88335359 + RMER1A Other Other 136 286 -744 6 836 1085 204 34 13 chr12 32922156 32922390 -88335140 + RMER1A Other Other 432 670 -360 6 836 546 156 0 10 chr12 32922370 32922467 -88335063 + L1_Rod LINE L1 5312 5407 -440 6 836 1055 255 102 43 chr12 32922528 32922922 -88334608 - MTD LTR MaLR 0 419 3 6 836 2437 86 3 60 chr12 32923921 32924268 -88333262 - ORR1A2 LTR MaLR 0 327 1 6 836 245 294 173 9 chr12 32924410 32924520 -88333010 + LTR16A LTR ERVL 1 128 -323 6 836 227 211 0 0 chr12 32924927 32924965 -88332565 + tRNA-Ala-GCY_ tRNA tRNA 7 44 -31 6 836 218 262 164 0 chr12 32924965 32924988 -88332542 + ID4_ SINE ID 13 83 0 6 836 557 56 0 0 chr12 32929838 32929910 -88327620 + B2_Mm2 SINE B2 90 161 -34 6 836 234 0 0 0 chr12 32929910 32929936 -88327594 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 836 227 203 34 0 chr12 32929951 32930010 -88327520 - MER2 DNA MER2_type -140 205 145 6 836 396 0 0 0 chr12 32930499 32930543 -88326987 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 836 217 303 100 9 chr12 32931733 32931843 -88325687 + MIRb SINE MIR 23 142 -126 6 836 189 121 0 0 chr12 32931956 32931989 -88325541 + (T)n Simple_repeat Simple_repeat 1 33 0 6 836 301 295 161 5 chr12 32932178 32932389 -88325141 - L2a LINE L2 0 3426 3183 6 836 344 77 96 0 chr12 32932389 32932493 -88325037 + GA-rich Low_complexity Low_complexity 2 115 0 6 836 1307 161 13 26 chr12 32933007 32933236 -88324294 + URR1A DNA MER1_type 1 226 0 6 836 252 77 0 0 chr12 32933510 32933549 -88323981 + (T)n Simple_repeat Simple_repeat 1 39 0 6 836 299 227 99 9 chr12 32934079 32934190 -88323340 - MLT1A LTR MaLR -253 121 1 6 836 465 19 0 0 chr12 32934280 32934334 -88323196 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 836 1605 276 179 24 chr12 32934385 32936013 -88321517 - L1MA5 LINE L1 -259 6041 4136 6 836 211 339 16 0 chr12 32936044 32936106 -88321424 + RSINE1 SINE B4 5 67 -98 6 836 297 0 0 0 chr12 32936106 32936139 -88321391 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 836 537 193 142 0 chr12 32936201 32936334 -88321196 - ORR1C1 LTR MaLR 0 378 161 6 836 1766 157 199 97 chr12 32936334 32936747 -88320783 + RLTR20B2 LTR ERVK 1 406 -154 6 836 360 0 0 0 chr12 32936747 32936787 -88320743 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 836 1766 157 199 97 chr12 32936787 32936881 -88320649 + RLTR20B2 LTR ERVK 407 559 -1 6 836 983 176 75 5 chr12 32936881 32937080 -88320450 - ORR1C1 LTR MaLR -165 213 1 6 836 2123 246 89 100 chr12 32937080 32938243 -88319287 - ORR1C1-int LTR MaLR -1 1508 361 6 836 463 118 186 0 chr12 32938234 32938336 -88319194 - ORR1C1 LTR MaLR -257 121 1 6 836 1615 299 59 53 chr12 32938343 32938875 -88318655 - L1MA5 LINE L1 -2061 4082 3568 6 836 745 213 57 0 chr12 32938875 32939016 -88318514 - B1_Mur3 SINE Alu 0 149 1 6 836 1615 299 59 53 chr12 32939016 32939642 -88317888 - L1MA5 LINE L1 -2576 3567 2917 6 836 250 264 97 26 chr12 32939681 32939794 -88317736 + Charlie2b DNA MER1_type 1193 1313 -1469 6 836 6438 196 65 31 chr12 32940122 32940683 -88316847 + Lx5 LINE L1 892 1471 -4406 6 836 351 0 0 0 chr12 32940683 32940722 -88316808 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 836 6438 167 44 22 chr12 32940722 32941305 -88316225 + Lx5 LINE L1 1472 2051 -3826 6 836 507 17 0 0 chr12 32941305 32941365 -88316165 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 836 6438 167 44 22 chr12 32941365 32941821 -88315709 + Lx5 LINE L1 2052 2525 -3352 6 836 275 226 15 15 chr12 32941823 32941897 -88315633 + BGLII_A LTR ERVK 3 76 -365 6 836 6081 146 38 4 chr12 32941897 32942976 -88314554 + Lx5 LINE L1 3181 4296 -1581 6 836 33270 79 17 23 chr12 32942972 32948431 -88309099 + L1Md_F2 LINE L1 163 5585 -298 6 836 8465 40 1 2 chr12 32948432 32949429 -88308101 + L1Md_F2 LINE L1 5587 6582 0 6 836 3229 218 346 23 chr12 32949469 32950013 -88307517 + Lx5 LINE L1 4288 5253 -633 6 836 2377 121 36 33 chr12 32950013 32950406 -88307124 - ORR1B1 LTR MaLR 0 394 1 6 836 4044 216 39 129 chr12 32950406 32952445 -88305085 + Lx5 LINE L1 5246 7452 -8 6 836 508 262 70 85 chr12 32952446 32952717 -88304813 + Charlie2b DNA MER1_type 1323 1589 -1193 6 836 290 293 0 0 chr12 32952850 32952925 -88304605 - ID4_ SINE ID 0 83 9 6 836 535 302 58 68 chr12 32952937 32952978 -88304552 + Charlie2b DNA MER1_type 1779 1814 -968 6 836 752 19 28 9 chr12 32952978 32953085 -88304445 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 6 836 535 302 58 68 chr12 32953085 32953573 -88303957 + Charlie2b DNA MER1_type 1815 2303 -479 6 836 2640 144 45 56 chr12 32953633 32954147 -88303383 - Lx3C LINE L1 -3 6973 6466 6 836 1215 175 0 14 chr12 32954150 32954359 -88303171 + Lx3C LINE L1 6246 6451 -525 6 836 16119 138 38 5 chr12 32954356 32957172 -88300358 - L1_Mur1 LINE L1 -1208 4678 1769 6 836 558 285 210 21 chr12 32957635 32957868 -88299662 - B4A SINE B4 -14 278 2 7 836 1579 177 81 21 chr12 32957963 32958297 -88299233 + ORR1B1 LTR MaLR 41 394 0 7 836 779 182 124 6 chr12 32958645 32958822 -88298708 - ORR1B1 LTR MaLR -196 198 1 7 836 558 0 0 0 chr12 32959581 32959643 -88297887 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 836 270 115 16 32 chr12 32959889 32959952 -88297578 + G-rich Low_complexity Low_complexity 2 63 0 7 836 879 266 42 30 chr12 32960340 32960670 -88296860 + L1MA6 LINE L1 5766 6099 -201 7 836 640 199 16 8 chr12 32961296 32961423 -88296107 + B1_Mur1 SINE Alu 12 139 -10 7 836 383 306 68 12 chr12 32961470 32961632 -88295898 + B4A SINE B4 5 175 -117 7 836 403 170 10 10 chr12 32961709 32961810 -88295720 + (CA)n Simple_repeat Simple_repeat 2 102 0 7 836 26 30 0 0 chr12 32962122 32962155 -88295375 + AT_rich Low_complexity Low_complexity 1 33 0 7 836 274 231 0 21 chr12 32962156 32962249 -88295281 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 7 836 641 248 39 7 chr12 32962275 32962429 -88295101 - B3A SINE B2 -39 159 1 7 836 268 182 62 49 chr12 32962496 32962554 -88294976 + Lx8 LINE L1 6900 6959 -514 7 836 1208 190 201 10 chr12 32962554 32962868 -88294662 + ORR1D1 LTR MaLR 1 374 0 7 836 351 195 602 35 chr12 32962868 32962950 -88294580 + Lx8 LINE L1 6960 7087 -386 7 836 272 263 108 38 chr12 32962991 32963204 -88294326 - L1_Rod LINE L1 -4353 1494 1267 7 836 956 189 31 0 chr12 32963222 32963413 -88294117 + RLTR26 LTR ERVK 1 197 -445 7 836 1299 260 159 45 chr12 32963410 32964106 -88293424 + RMER17B LTR ERVK 171 946 -12 7 836 1965 186 101 10 chr12 32964428 32964814 -88292716 - MTC LTR MaLR 0 421 1 7 836 603 117 0 0 chr12 32965095 32965189 -88292341 + (GGA)n Simple_repeat Simple_repeat 3 96 0 7 836 213 94 0 0 chr12 32965551 32965583 -88291947 + (TCCC)n Simple_repeat Simple_repeat 2 33 0 7 836 663 230 20 0 chr12 32966049 32966197 -88291333 - B3 SINE B2 -32 184 34 7 836 744 166 181 24 chr12 32966214 32966424 -88291106 - RMER4B LTR ERVK -342 243 1 7 836 628 251 192 21 chr12 32966646 32966971 -88290559 - L1MA6 LINE L1 -8 6292 5911 7 836 556 70 23 0 chr12 32967952 32968038 -88289492 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 836 448 299 6 77 chr12 32968125 32968306 -88289224 - B4A SINE B4 -121 171 4 7 836 270 0 0 0 chr12 32968462 32968492 -88289038 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 836 410 181 397 13 chr12 32969094 32969250 -88288280 - B3 SINE B2 0 216 1 7 836 582 270 143 107 chr12 32969390 32969718 -88287812 - MTE2b LTR MaLR -39 340 1 7 836 635 207 161 38 chr12 32970236 32970422 -88287108 + B3 SINE B2 2 210 -6 7 836 276 274 0 69 chr12 32970514 32970616 -88286914 - RMER1C Other Other 0 1342 1248 7 836 1392 291 117 29 chr12 32970530 32971407 -88286123 - Lx7 LINE L1 -4 7469 6479 7 836 658 0 24 0 chr12 32971454 32971536 -88285994 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 7 836 188 61 0 57 chr12 32971874 32971909 -88285621 + (TGGGGG)n Simple_repeat Simple_repeat 4 36 0 7 836 463 283 10 8 chr12 32972022 32972155 -88285375 + Lx9 LINE L1 5832 5969 -1675 7 836 1755 269 60 53 chr12 32972248 32972883 -88284647 + Lx9 LINE L1 6188 6826 -818 7 836 273 287 103 50 chr12 32972865 32973184 -88284346 + L1_Mur3 LINE L1 3083 3418 -2462 7 836 2037 90 11 75 chr12 32973332 32973397 -88284133 - ORR1A2 LTR MaLR 0 327 280 7 836 4069 64 2 0 chr12 32973397 32973898 -88283632 - L1_Mus2 LINE L1 0 6566 6065 7 836 2037 90 11 75 chr12 32973898 32974181 -88283349 - ORR1A2 LTR MaLR -48 279 1 7 836 2964 233 30 88 chr12 32974185 32975082 -88282448 - RMER1C Other Other -10 1332 156 7 836 533 198 103 0 chr12 32975187 32975303 -88282227 + B1_Mur3 SINE Alu 3 130 -19 7 836 459 0 0 0 chr12 32975303 32975354 -88282176 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 836 261 0 0 0 chr12 32975381 32975410 -88282120 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 836 1050 297 20 25 chr12 32975420 32975827 -88281703 + L1M2 LINE L1 3750 4154 -1989 7 836 359 297 17 17 chr12 32975824 32975944 -88281586 - L1M4 LINE L1 -469 5715 5596 7 836 453 273 16 0 chr12 32976267 32976388 -88281142 + RSINE1 SINE B4 1 123 -42 7 836 187 225 14 14 chr12 32977443 32977515 -88280015 + CT-rich Low_complexity Low_complexity 2 73 0 7 836 473 223 0 26 chr12 32978122 32978237 -88279293 + ID_B1 SINE B4 112 223 -1 7 836 1628 146 42 129 chr12 32978396 32978798 -88278732 + ORR1B2 LTR MaLR 1 367 0 7 836 281 276 22 33 chr12 32979043 32979133 -88278397 - ID_B1 SINE B4 -7 217 129 7 836 880 248 39 7 chr12 32979135 32979419 -88278111 + L1M3 LINE L1 2558 2850 -3290 7 836 351 0 0 0 chr12 32979820 32979859 -88277671 + (T)n Simple_repeat Simple_repeat 1 39 0 7 836 783 299 85 49 chr12 32979864 32980357 -88277173 - L1MB2 LINE L1 -2 6169 5659 7 836 653 223 68 19 chr12 32980623 32980806 -88276724 + B3A SINE B2 8 189 -27 7 836 418 317 140 19 chr12 32981417 32981560 -88275970 - LTR52 LTR ERVL -53 368 218 7 836 4677 123 135 6 chr12 32981560 32982405 -88275125 - RMER17B LTR ERVK -4 954 1 7 836 418 317 140 19 chr12 32982405 32982582 -88274948 - LTR52 LTR ERVL -204 217 11 7 836 634 99 89 0 chr12 32982617 32982718 -88274812 - ORR1B1 LTR MaLR -88 306 197 7 836 2069 141 9 97 chr12 32982899 32983322 -88274208 - ORR1B1 LTR MaLR -8 386 1 7 836 541 230 207 18 chr12 32983466 32983630 -88273900 - B3A SINE B2 -1 197 3 7 836 2398 161 0 29 chr12 32984867 32985284 -88272246 + MTB_Mm LTR MaLR 1 405 -2 7 836 281 196 0 0 chr12 32985420 32985476 -88272054 + L1_Mur3 LINE L1 5372 5427 -453 7 836 185 0 40 0 chr12 32985482 32985507 -88272023 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 836 44 75 0 0 chr12 32985587 32985680 -88271850 + AT_rich Low_complexity Low_complexity 1 93 0 7 836 4655 206 71 54 chr12 32986015 32987978 -88269552 - Lx5 LINE L1 0 7050 5069 7 836 1037 267 76 22 chr12 32988025 32988668 -88268862 - L1MB7 LINE L1 -1 6183 5490 7 836 899 224 55 0 chr12 32988973 32989174 -88268356 - ID_B1 SINE B4 -11 213 2 7 836 490 230 35 0 chr12 32989701 32989814 -88267716 + PB1D10 SINE Alu 1 117 0 7 836 21 0 0 0 chr12 32990086 32990107 -88267423 + AT_rich Low_complexity Low_complexity 1 21 0 7 836 1863 262 91 23 chr12 32990200 32990938 -88266592 - L1MB7 LINE L1 -844 5302 4515 7 836 276 105 5 5 chr12 32991137 32991188 -88266342 + MTD LTR MaLR 329 405 -14 7 836 1492 185 173 6 chr12 32991256 32991615 -88265915 - MTD LTR MaLR 0 419 1 7 836 498 33 0 0 chr12 32991958 32992018 -88265512 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 836 553 317 14 40 chr12 32992020 32992296 -88265234 - RMER15 LTR ERVL -2 573 305 7 836 832 230 72 49 chr12 32992518 32992783 -88264747 - B4A SINE B4 -12 280 10 7 836 963 167 11 16 chr12 32993810 32993834 -88263696 - B2_Mm1t SINE B2 -10 183 163 7 836 315 49 0 0 chr12 32993834 32993875 -88263655 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 836 1148 82 6 0 chr12 32993875 32994033 -88263497 - B2_Mm2 SINE B2 -35 160 2 7 836 596 326 127 10 chr12 32994062 32994353 -88263177 + Kanga1a DNA Tc2 91 415 -339 7 836 241 196 0 19 chr12 32994568 32994620 -88262910 + CT-rich Low_complexity Low_complexity 2 52 0 7 836 243 0 0 0 chr12 32995200 32995227 -88262303 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 7 836 384 22 0 0 chr12 32995243 32995288 -88262242 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 7 836 264 71 54 0 chr12 32995408 32995464 -88262066 + (TTTTTG)n Simple_repeat Simple_repeat 4 62 0 7 836 1055 215 80 5 chr12 32996654 32996878 -88260652 - Lx8 LINE L1 -134 7339 7099 7 836 356 174 43 0 chr12 32996937 32997029 -88260501 - Lx9 LINE L1 0 7644 7549 7 836 420 20 0 0 chr12 32997029 32997078 -88260452 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 836 1057 189 5 0 chr12 32997084 32997269 -88260261 - Lx9 LINE L1 -393 7251 7066 7 836 2169 227 60 31 chr12 32997268 32997660 -88259870 - Lx9 LINE L1 -958 6686 6280 7 836 480 35 0 0 chr12 32997660 32997718 -88259812 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 836 2169 203 102 31 chr12 32997718 32998074 -88259456 - Lx9 LINE L1 -1365 6279 5794 7 836 5694 80 14 6 chr12 32998096 32999538 -88257992 + L1VL4 LINE L1 210 1665 -1894 7 836 597 52 0 0 chr12 32999538 32999615 -88257915 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 7 836 352 302 32 39 chr12 32999668 32999823 -88257707 - B3 SINE B2 -6 210 57 7 836 1821 172 0 59 chr12 33000000 33000339 -88257191 - ORR1A2 LTR MaLR -8 319 1 1 836 3866 153 9 6 chr12 33000339 33000983 -88256547 - ORR1A2-int LTR MaLR 0 1963 1318 1 836 931 44 0 0 chr12 33001411 33001524 -88256006 + MusHAL1 LINE L1 1217 1329 -1383 2 836 943 161 61 46 chr12 33001613 33001880 -88255650 - RLTR13D4 LTR ERVK 0 1033 646 3 836 11032 75 29 6 chr12 33001880 33003665 -88253865 + L1_Mur1 LINE L1 2092 3912 -1974 4 836 7568 89 18 4 chr12 33003666 33005061 -88252469 + L1_Mus4 LINE L1 5224 6632 -4 5 836 279 0 0 0 chr12 33006475 33006506 -88251024 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 836 640 281 37 12 chr12 33006506 33006663 -88250867 - B3A SINE B2 -26 172 12 7 836 272 318 28 0 chr12 33006757 33006864 -88250666 + HAL1 LINE L1 64 173 -2334 8 836 271 179 0 0 chr12 33007221 33007288 -88250242 - MT2A LTR ERVL -1 532 466 9 836 534 155 0 0 chr12 33007298 33007395 -88250135 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 836 1431 203 205 50 chr12 33007402 33007590 -88249940 - MT2A LTR ERVL -71 462 233 9 836 563 51 13 0 chr12 33007590 33007669 -88249861 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 836 1431 203 205 50 chr12 33007669 33007880 -88249650 - MT2A LTR ERVL -301 232 1 9 836 384 353 44 0 chr12 33008141 33008277 -88249253 + RSINE1 SINE B4 3 144 -21 1 836 259 233 0 32 chr12 33008622 33008684 -88248846 + HAL1 LINE L1 1473 1532 -975 8 836 632 256 6 49 chr12 33008696 33008860 -88248670 + B3A SINE B2 1 157 -41 1 836 423 0 0 0 chr12 33008871 33008918 -88248612 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 836 340 348 43 0 chr12 33009057 33009195 -88248335 + RSINE1 SINE B4 3 146 -19 1 836 324 0 0 0 chr12 33009254 33009290 -88248240 + (TAAG)n Simple_repeat Simple_repeat 1 36 0 1 836 329 329 161 21 chr12 33009306 33009635 -88247895 + HAL1 LINE L1 1764 2138 -369 8 836 513 141 0 0 chr12 33009648 33009733 -88247797 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 836 1096 281 214 62 chr12 33010049 33011045 -88246485 + L1MC1 LINE L1 5 1151 -5357 1 836 369 228 123 0 chr12 33011077 33011191 -88246339 + L1MC1 LINE L1 1318 1445 -5063 1 836 36504 80 7 5 chr12 33011196 33017739 -88239791 - L1Md_F2 LINE L1 -12 6570 22 1 836 1889 257 81 23 chr12 33017759 33018052 -88239478 + L1MC1 LINE L1 3435 3732 -2589 1 836 2588 127 37 3 chr12 33018052 33018431 -88239099 - ORR1B1 LTR MaLR -2 392 1 2 836 1889 257 81 23 chr12 33018431 33018782 -88238748 + L1MC1 LINE L1 3733 4116 -2205 1 836 654 240 21 21 chr12 33018885 33019072 -88238458 + Ricksha DNA MuDR 1246 1432 -1814 2 836 984 284 137 85 chr12 33019533 33020306 -88237224 + Ricksha DNA MuDR 2211 3023 -223 2 836 267 246 140 0 chr12 33020409 33020466 -88237064 + ID4 SINE ID 3 67 -16 2 836 359 194 10 0 chr12 33020469 33020572 -88236958 + CT-rich Low_complexity Low_complexity 1 104 0 2 836 507 45 0 0 chr12 33020574 33020640 -88236890 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 836 360 182 26 13 chr12 33020654 33020732 -88236798 - Ricksha_0 DNA MuDR -1615 118 40 2 836 1683 286 73 33 chr12 33020756 33021372 -88236158 + L1MC1 LINE L1 4189 4838 -1483 1 836 315 0 0 0 chr12 33021372 33021407 -88236123 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 2 836 1683 286 73 33 chr12 33021407 33021526 -88236004 + L1MC1 LINE L1 4839 4954 -1367 1 836 946 158 0 14 chr12 33021658 33021806 -88235724 - B1_Mur2 SINE Alu -2 147 2 2 836 257 186 54 54 chr12 33022562 33022636 -88234894 + MLT1A1 LTR MaLR 335 408 0 2 836 1109 272 95 33 chr12 33022668 33023151 -88234379 + L1MC1 LINE L1 5967 6479 -29 1 836 956 133 12 0 chr12 33023763 33023928 -88233602 + (TCCC)n Simple_repeat Simple_repeat 3 169 0 2 836 840 260 55 81 chr12 33024575 33024847 -88232683 - B4 SINE B4 -21 271 7 3 836 778 304 62 59 chr12 33025180 33025453 -88232077 - MTE2a LTR MaLR 0 379 106 3 836 4394 52 4 13 chr12 33025602 33026127 -88231403 + L1Md_F2 LINE L1 6061 6580 -2 3 836 253 296 125 0 chr12 33026784 33026872 -88230658 - MTE2a LTR MaLR -280 99 1 3 836 202 310 71 12 chr12 33027167 33027252 -88230278 + MER5A DNA MER1_type 79 168 -21 3 836 957 143 42 0 chr12 33027353 33027521 -88230009 - URR1A DNA MER1_type -1 225 51 3 836 21 0 0 0 chr12 33027521 33027542 -88229988 + AT_rich Low_complexity Low_complexity 1 21 0 3 836 2383 178 32 65 chr12 33027546 33028052 -88229478 - MT2A LTR ERVL -44 489 1 3 836 356 125 0 18 chr12 33028052 33028109 -88229421 - MERVL_2A-int LTR ERVL 0 5761 5706 3 836 278 132 0 54 chr12 33028109 33028165 -88229365 - ORR1A3-int LTR MaLR -1324 639 587 3 836 4975 197 65 18 chr12 33028173 33028313 -88229217 - MERVL_2A-int LTR ERVL -122 5639 5477 3 836 609 40 0 0 chr12 33028313 33028389 -88229141 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 836 4975 197 65 18 chr12 33028389 33028933 -88228597 - MERVL_2A-int LTR ERVL -285 5476 4903 3 836 1155 217 18 0 chr12 33028933 33029154 -88228376 - URR1A DNA MER1_type 0 226 2 3 836 4975 197 65 18 chr12 33029154 33029487 -88228043 - MERVL_2A-int LTR ERVL -859 4902 4574 3 836 292 269 51 0 chr12 33029480 33029558 -88227972 - MERVL_2A-int LTR ERVL -1343 4324 4243 3 836 829 191 0 36 chr12 33029572 33029591 -88227939 + L1_Mur2 LINE L1 5716 5729 -148 4 836 3242 102 18 5 chr12 33029591 33030033 -88227497 - L1_Mus3 LINE L1 -2 6636 6189 4 104 3349 65 9 0 chr12 33030033 33030462 -88227068 + L1_Mus3 LINE L1 5736 6168 -470 4 837 5616 169 21 13 chr12 33030520 33031421 -88226109 + RMER13B LTR ERVK 1 908 0 4 837 333 68 0 0 chr12 33032994 33033038 -88224492 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 837 300 271 133 61 chr12 33034736 33034901 -88222629 + HAL1-3A_ME LINE L1 2262 2438 -420 4 837 354 350 36 36 chr12 33035892 33036058 -88221472 + MER5A1 DNA MER1_type 1 166 0 4 837 439 17 33 0 chr12 33036590 33036650 -88220880 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 837 265 181 0 35 chr12 33037308 33037394 -88220136 + T-rich Low_complexity Low_complexity 4 86 0 4 837 609 291 5 105 chr12 33038052 33038106 -88219424 + B3A SINE B2 2 55 -143 4 837 2489 117 3 0 chr12 33038106 33038432 -88219098 + ORR1A2 LTR MaLR 1 327 0 4 837 609 291 5 105 chr12 33038432 33038596 -88218934 + B3A SINE B2 56 198 0 4 837 4454 166 7 3 chr12 33039104 33039831 -88217699 + Lx7 LINE L1 4971 5700 -180 5 837 1684 83 4 9 chr12 33039831 33040063 -88217467 - 7SK RNA RNA -96 235 5 5 837 6162 43 17 0 chr12 33040063 33040767 -88216763 + L1_Mus1 LINE L1 5852 6567 0 5 837 5807 202 34 75 chr12 33040780 33042162 -88215368 + Lx7 LINE L1 5690 7014 -682 5 837 1308 202 36 96 chr12 33042161 33042766 -88214764 + Lx7 LINE L1 7160 7696 0 5 837 249 33 0 0 chr12 33042766 33042796 -88214734 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 5 837 513 297 12 37 chr12 33043402 33043563 -88213967 + ID_B1 SINE B4 66 222 -2 5 837 673 269 7 20 chr12 33043420 33043568 -88213962 + B1F2 SINE Alu 4 149 0 5 837 344 259 62 36 chr12 33043636 33043748 -88213782 - MLT1A1 LTR MaLR -8 400 286 5 837 246 32 0 0 chr12 33043863 33043894 -88213636 + (CTAAT)n Simple_repeat Simple_repeat 1 31 0 5 837 297 314 141 28 chr12 33044867 33045044 -88212486 - L3 LINE CR1 -355 4134 3938 5 837 441 0 0 0 chr12 33045507 33045556 -88211974 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 837 180 0 0 0 chr12 33045557 33045577 -88211953 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 837 270 0 0 0 chr12 33045794 33045824 -88211706 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 837 14081 113 13 5 chr12 33045865 33048717 -88208813 + L1_Mus3 LINE L1 3771 6632 -6 6 837 924 36 0 0 chr12 33048720 33048832 -88208698 + (GA)n Simple_repeat Simple_repeat 1 112 0 6 837 7764 143 67 5 chr12 33048837 33050209 -88207321 + L1_Mur2 LINE L1 2359 3815 -2062 6 837 4281 196 24 44 chr12 33050206 33051106 -88206424 + Lx5 LINE L1 6166 7047 -3 6 837 887 172 28 0 chr12 33051392 33051537 -88205993 - B1_Mur3 SINE Alu 0 149 1 6 837 2395 152 21 16 chr12 33052031 33052411 -88205119 - ORR1C2 LTR MaLR -2 382 1 6 837 259 333 77 60 chr12 33052497 33052679 -88204851 - MLT1L LTR MaLR -87 523 339 6 837 376 256 49 0 chr12 33052720 33052802 -88204728 - MTE2b LTR MaLR -218 161 76 6 837 268 253 131 12 chr12 33052733 33052817 -88204713 - MT2A LTR ERVL -386 147 54 7 837 247 243 0 79 chr12 33052920 33052996 -88204534 - MTE2b LTR MaLR -305 74 5 6 837 929 194 0 12 chr12 33053602 33053769 -88203761 - RMER6C LTR ERVK -4 716 552 7 837 2163 176 195 32 chr12 33053741 33054392 -88203138 - RMER6C LTR ERVK -35 721 1 7 837 305 113 0 0 chr12 33054546 33054599 -88202931 + L1_Mus2 LINE L1 5917 5969 -597 7 837 20488 21 7 0 chr12 33054967 33057659 -88199871 + L1Md_T LINE L1 2878 5586 -297 7 837 9595 5 0 0 chr12 33057659 33058655 -88198875 + L1Md_T LINE L1 5587 6582 0 7 837 1178 290 137 78 chr12 33058752 33059978 -88197552 - L1MDa LINE L1 -4499 2134 836 7 837 239 162 0 0 chr12 33060136 33060173 -88197357 - L1MDa LINE L1 -6150 483 447 7 837 590 291 132 0 chr12 33060210 33060505 -88197025 - L1MDa LINE L1 -6283 350 17 7 837 21 0 0 0 chr12 33060665 33060686 -88196844 + AT_rich Low_complexity Low_complexity 1 21 0 7 837 321 211 39 8 chr12 33061163 33061292 -88196238 + (TA)n Simple_repeat Simple_repeat 1 133 0 7 837 186 43 0 0 chr12 33061296 33061319 -88196211 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 837 331 250 0 14 chr12 33062480 33062553 -88194977 + ID4_ SINE ID 1 72 -11 7 837 24 53 0 0 chr12 33063867 33063905 -88193625 + GC_rich Low_complexity Low_complexity 1 38 0 7 837 34 42 0 0 chr12 33064162 33064210 -88193320 + GC_rich Low_complexity Low_complexity 1 48 0 8 837 23 54 0 0 chr12 33064260 33064297 -88193233 + GC_rich Low_complexity Low_complexity 1 37 0 8 837 210 191 0 0 chr12 33066237 33066279 -88191251 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 8 837 1270 161 18 0 chr12 33068833 33069050 -88188480 - URR1A DNA MER1_type -5 221 1 8 837 627 269 8 0 chr12 33069555 33069689 -88187841 - ID_B1 SINE B4 -8 216 82 8 837 1892 195 50 3 chr12 33070334 33070694 -88186836 + MTC LTR MaLR 1 377 -44 8 837 243 79 0 0 chr12 33070694 33070732 -88186798 + (T)n Simple_repeat Simple_repeat 1 38 0 8 837 3355 43 13 10 chr12 33070883 33071278 -88186252 + MTA_Mm LTR MaLR 1 396 0 8 837 22 0 0 0 chr12 33071288 33071310 -88186220 + AT_rich Low_complexity Low_complexity 1 22 0 8 837 414 0 0 0 chr12 33071370 33071416 -88186114 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 837 381 286 47 8 chr12 33071646 33071773 -88185757 + MIR SINE MIR 119 250 -12 9 837 180 0 0 0 chr12 33071842 33071862 -88185668 + (TA)n Simple_repeat Simple_repeat 1 20 0 9 837 390 214 90 0 chr12 33072111 33072200 -88185330 - ID_B1 SINE B4 -8 216 120 9 837 270 0 0 0 chr12 33072202 33072232 -88185298 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 9 837 976 157 0 53 chr12 33072399 33072587 -88184943 + MTC LTR MaLR 48 225 -196 9 837 2289 118 105 0 chr12 33072587 33072950 -88184580 - MTC LTR MaLR 0 421 21 9 837 1043 204 5 5 chr12 33072959 33073146 -88184384 + MTC LTR MaLR 235 421 0 9 837 5466 165 142 18 chr12 33073146 33074265 -88183265 + MTC-int LTR MaLR 1 1258 0 9 837 2124 176 31 5 chr12 33074265 33074654 -88182876 + MTC LTR MaLR 1 399 -22 9 837 396 0 0 0 chr12 33074654 33074698 -88182832 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 9 837 407 125 14 0 chr12 33074950 33075022 -88182508 + (GGA)n Simple_repeat Simple_repeat 3 75 0 9 837 1407 234 39 99 chr12 33075292 33075775 -88181755 - ORR1D2-int LTR MaLR -722 648 195 9 837 1163 225 73 7 chr12 33075862 33076148 -88181382 - ORR1D2 LTR MaLR -4 366 62 9 837 1009 274 12 12 chr12 33076132 33076383 -88181147 - MT2A LTR ERVL -133 400 150 9 837 317 304 42 42 chr12 33076426 33076522 -88181008 - RSINE1 SINE B4 -68 97 2 1 837 324 0 0 0 chr12 33077050 33077086 -88180444 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1 837 8438 66 7 1 chr12 33077685 33079686 -88177844 + L1Md_F2 LINE L1 366 2380 -3503 1 837 14155 65 4 7 chr12 33079681 33081495 -88176035 + L1Md_F2 LINE L1 3777 5586 -297 1 837 8835 40 2 2 chr12 33081495 33082490 -88175040 + L1Md_F2 LINE L1 5587 6581 -1 1 837 261 0 0 0 chr12 33082512 33082541 -88174989 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 837 180 0 0 0 chr12 33082541 33082560 -88174970 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 837 253 253 53 13 chr12 33084401 33084477 -88173053 - L1M2 LINE L1 -695 5596 5518 1 837 459 0 0 0 chr12 33084504 33084555 -88172975 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1 837 3413 126 8 4 chr12 33084557 33085050 -88172480 - Lx4A LINE L1 -10 7048 6554 1 837 4286 62 6 0 chr12 33085048 33085552 -88171978 + L1Md_F2 LINE L1 6073 6579 -3 1 837 575 237 91 27 chr12 33085560 33085781 -88171749 - L1M2 LINE L1 -1298 4845 4611 1 837 330 267 94 0 chr12 33085835 33085944 -88171586 - L1MC3 LINE L1 -21 7764 7663 1 837 2560 122 113 19 chr12 33086421 33086780 -88170750 + RMER4A LTR ERVK 1 381 -85 1 837 1005 9 0 0 chr12 33086780 33086894 -88170636 + (TTC)n Simple_repeat Simple_repeat 3 116 0 1 837 2560 122 113 19 chr12 33086894 33086960 -88170570 + RMER4A LTR ERVK 382 465 -1 1 837 190 333 30 0 chr12 33087764 33087830 -88169700 + MIRc SINE MIR 83 150 -118 1 837 2648 181 38 35 chr12 33088677 33089226 -88168304 - RLTR31_Mur LTR ERVK -2 551 1 1 837 1594 200 150 3 chr12 33089299 33089460 -88168070 - ORR1D1 LTR MaLR 0 374 166 1 837 495 0 0 0 chr12 33089460 33089515 -88168015 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 837 1594 200 150 3 chr12 33089515 33089679 -88167851 - ORR1D1 LTR MaLR -209 165 1 1 837 2729 273 119 86 chr12 33089679 33090029 -88167501 - ORR1D1-int LTR MaLR 0 1509 1109 1 837 461 17 17 0 chr12 33090029 33090087 -88167443 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 837 2729 273 119 86 chr12 33090087 33090303 -88167227 - ORR1D1-int LTR MaLR -401 1108 899 1 837 3424 20 58 5 chr12 33090303 33090699 -88166831 - L1Md_F2 LINE L1 -2 6580 6164 1 837 2729 273 119 86 chr12 33090699 33091592 -88165938 - ORR1D1-int LTR MaLR -611 898 2 1 837 847 184 105 20 chr12 33091592 33091792 -88165738 - ORR1D1 LTR MaLR 0 374 158 1 837 769 233 86 90 chr12 33091832 33092077 -88165453 - ORR1D1 LTR MaLR -130 244 1 1 837 950 229 72 25 chr12 33092172 33092409 -88165121 - MTD LTR MaLR -154 265 18 1 837 28 0 0 0 chr12 33092429 33092457 -88165073 + AT_rich Low_complexity Low_complexity 1 28 0 1 837 319 188 20 141 chr12 33092477 33092576 -88164954 + MT2B LTR ERVL 152 238 -363 1 837 694 212 22 14 chr12 33092500 33092639 -88164891 + B1_Mur2 SINE Alu 10 149 0 1 837 216 162 0 0 chr12 33092641 33092678 -88164852 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 1 837 308 263 104 101 chr12 33092797 33093018 -88164512 - L1ME1 LINE L1 -16 6163 5935 1 837 1304 254 80 41 chr12 33093018 33093183 -88164347 - MTE2a LTR MaLR 0 379 202 1 837 180 0 0 0 chr12 33093183 33093203 -88164327 + (CATG)n Simple_repeat Simple_repeat 2 21 0 1 837 1304 254 80 41 chr12 33093203 33093402 -88164128 - MTE2a LTR MaLR -178 201 2 1 837 308 263 104 101 chr12 33093402 33093506 -88164024 - L1ME1 LINE L1 -245 5934 5837 1 837 279 0 0 0 chr12 33094586 33094617 -88162913 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 837 387 0 0 0 chr12 33094617 33094659 -88162871 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 837 2519 127 51 2 chr12 33094855 33095250 -88162280 + Lx LINE L1 6235 6648 -6 1 837 333 0 0 0 chr12 33095276 33095313 -88162217 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 837 242 89 44 0 chr12 33095321 33095366 -88162164 + (CAGA)n Simple_repeat Simple_repeat 1 47 0 1 837 1223 271 77 32 chr12 33095372 33095841 -88161689 + L1M2 LINE L1 3690 4179 -1964 1 837 30721 62 7 5 chr12 33095849 33100308 -88157222 + L1Md_A LINE L1 651 5111 -772 1 837 14130 44 3 0 chr12 33100305 33103681 -88153849 - L1Md_Gf LINE L1 -2812 3074 1 1 837 231 185 36 18 chr12 33103702 33103757 -88153773 - L1MCa LINE L1 -2503 4061 4006 1 837 243 0 0 0 chr12 33103783 33103810 -88153720 + (T)n Simple_repeat Simple_repeat 1 27 0 1 837 743 256 71 0 chr12 33103995 33104206 -88153324 - L1MCa LINE L1 -2695 3869 3644 1 837 421 250 0 74 chr12 33104219 33104327 -88153203 + ID_B1 SINE B4 119 218 -6 1 837 284 282 86 23 chr12 33104423 33104597 -88152933 - L1MCa LINE L1 -2948 3616 3432 1 837 645 229 28 153 chr12 33104598 33104814 -88152716 - RMER30 DNA MER1_type -7 195 7 1 837 774 270 141 7 chr12 33104873 33105313 -88152217 - L1MCa LINE L1 -3230 3334 2836 1 837 6238 137 7 11 chr12 33105438 33106587 -88150943 - Lx5 LINE L1 -1038 6012 4862 1 837 2078 229 58 5 chr12 33106587 33106627 -88150903 + Lx5 LINE L1 6036 6075 -975 1 837 563 0 15 0 chr12 33106627 33106694 -88150836 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 1 837 2078 229 58 5 chr12 33106694 33107100 -88150430 + Lx5 LINE L1 6076 6505 -545 1 837 598 320 97 57 chr12 33107241 33107486 -88150044 - RMER13A LTR ERVK -227 681 397 1 837 5857 96 48 42 chr12 33107486 33108365 -88149165 - RMER17D LTR ERVK -2 887 4 1 837 598 274 173 72 chr12 33108365 33108723 -88148807 - RMER13A LTR ERVK -464 396 1 1 837 2410 214 45 37 chr12 33108727 33109266 -88148264 + Lx5 LINE L1 6503 7045 -5 1 837 645 244 131 70 chr12 33109300 33109699 -88147831 - L1MCa LINE L1 -3852 2712 2273 1 837 1186 188 158 12 chr12 33110183 33110442 -88147088 - ORR1D1 LTR MaLR -75 299 3 1 837 600 265 106 0 chr12 33110480 33110631 -88146899 - ID_B1 SINE B4 -9 215 49 1 837 2381 143 43 50 chr12 33110745 33111165 -88146365 - MTC LTR MaLR 0 421 5 1 837 528 267 147 70 chr12 33111747 33112102 -88145428 - L1MCa LINE L1 -5016 1029 648 1 837 900 274 124 16 chr12 33112252 33112501 -88145029 + B4A SINE B4 1 276 -16 1 837 943 75 0 14 chr12 33112511 33112659 -88144871 + (CA)n Simple_repeat Simple_repeat 1 146 0 1 837 707 231 0 0 chr12 33114439 33114569 -88142961 + B1_Mur2 SINE Alu 12 141 -8 1 837 1110 271 41 88 chr12 33114850 33115316 -88142214 - Lx6 LINE L1 -5 7455 7012 1 837 489 264 33 6 chr12 33115317 33115500 -88142030 + Lx7 LINE L1 5952 6139 -1557 1 837 1488 162 66 23 chr12 33115504 33115807 -88141723 - L1_Mur3 LINE L1 -280 5600 5285 1 837 2571 288 34 15 chr12 33115816 33116716 -88140814 - RMER1C Other Other -198 1144 204 1 837 691 227 17 28 chr12 33117092 33117273 -88140257 - RMER1B Other Other -294 772 594 1 837 297 0 0 0 chr12 33117340 33117373 -88140157 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 837 5007 163 79 52 chr12 33117418 33118639 -88138891 - L1_Mur3 LINE L1 -656 5224 3970 1 837 519 66 0 0 chr12 33118819 33118895 -88138635 + (TCTCTG)n Simple_repeat Simple_repeat 2 77 0 1 837 267 54 0 0 chr12 33118896 33118933 -88138597 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 837 1102 259 62 23 chr12 33119547 33119742 -88137788 + RMER15 LTR ERVL 258 453 -122 1 837 378 0 0 0 chr12 33119742 33119784 -88137746 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 837 1102 259 62 23 chr12 33119784 33119863 -88137667 + RMER15 LTR ERVL 454 531 -44 1 837 402 57 0 0 chr12 33119863 33119916 -88137614 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 837 1102 259 62 23 chr12 33119916 33119944 -88137586 + RMER15 LTR ERVL 532 572 -3 1 837 460 84 0 14 chr12 33120509 33120581 -88136949 + B1_Mm SINE Alu 77 147 0 1 837 4653 62 21 11 chr12 33120679 33121297 -88136233 + L1_Mus3 LINE L1 6015 6638 0 1 837 372 230 46 112 chr12 33121676 33121828 -88135702 - B1F2 SINE Alu 0 149 8 1 837 365 322 97 7 chr12 33121942 33122086 -88135444 + Cheshire DNA MER1_type 206 362 -2058 1 837 2861 304 131 48 chr12 33122261 33123681 -88133849 + Cheshire DNA MER1_type 422 1982 -438 1 837 6345 43 0 39 chr12 33123681 33124501 -88133029 - L1_Mus1 LINE L1 0 6567 5780 1 837 2861 304 131 48 chr12 33124501 33124749 -88132781 + Cheshire DNA MER1_type 1983 2227 -193 1 837 231 36 0 0 chr12 33124749 33124777 -88132753 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1 837 347 44 0 0 chr12 33124777 33124822 -88132708 - B1_Mm SINE Alu -12 135 91 1 837 297 0 0 0 chr12 33124823 33124856 -88132674 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1 837 994 110 0 0 chr12 33124856 33124992 -88132538 - B1_Mus1 SINE Alu -12 136 1 1 837 1521 153 99 17 chr12 33125223 33125441 -88132089 - RMER6D LTR ERVK -31 659 319 1 837 603 0 0 0 chr12 33125441 33125508 -88132022 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 837 1575 109 158 32 chr12 33125508 33125793 -88131737 - RMER6D LTR ERVK -397 323 3 1 837 1057 289 62 16 chr12 33125927 33126314 -88131216 - MLT1C LTR MaLR -3 464 60 1 837 561 330 78 6 chr12 33126593 33126773 -88130757 + MLT1D LTR MaLR 312 504 -1 1 837 563 293 167 14 chr12 33126773 33127060 -88130470 - MER2 DNA MER2_type -7 338 8 1 837 340 269 50 11 chr12 33127462 33127573 -88129957 + B1F1 SINE Alu 12 126 -23 1 837 321 237 12 62 chr12 33127578 33127659 -88129871 + ID4_ SINE ID 6 82 -1 1 837 759 283 94 80 chr12 33128489 33128839 -88128691 - MTEa LTR MaLR -6 373 19 1 837 250 382 10 0 chr12 33128753 33128855 -88128675 - MLT2B2 LTR ERVL -410 105 3 1 837 599 360 53 68 chr12 33129716 33130184 -88127346 - MLT1C LTR MaLR -1 466 6 1 837 22 0 0 0 chr12 33130361 33130383 -88127147 + AT_rich Low_complexity Low_complexity 1 22 0 1 837 576 254 74 7 chr12 33130982 33131117 -88126413 - RSINE1 SINE B4 -14 151 8 1 837 6301 83 17 16 chr12 33131520 33132952 -88124578 + L1VL4 LINE L1 389 1822 -1737 1 837 6512 114 43 5 chr12 33132946 33134001 -88123529 + Lx2 LINE L1 5540 6634 -363 1 837 1311 143 36 0 chr12 33134001 33134224 -88123306 + Lx2 LINE L1 6765 6995 -2 1 837 688 93 246 0 chr12 33134659 33134777 -88122753 + B1_Mus1 SINE Alu 2 148 0 1 837 219 326 98 26 chr12 33135326 33135481 -88122049 + MIRb SINE MIR 36 209 -59 1 837 567 289 0 0 chr12 33135550 33135678 -88121852 - ID_B1 SINE B4 -17 207 80 1 837 185 132 0 26 chr12 33135967 33136006 -88121524 + CT-rich Low_complexity Low_complexity 2 39 0 1 837 330 26 0 0 chr12 33136006 33136045 -88121485 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 837 432 0 0 0 chr12 33136146 33136194 -88121336 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 837 456 167 0 0 chr12 33137182 33137260 -88120270 + L1VL2 LINE L1 219 296 -6039 1 837 5309 86 14 0 chr12 33137260 33138060 -88119470 + MusHAL1 LINE L1 1271 2081 -631 1 837 447 313 85 64 chr12 33138439 33138722 -88118808 - MLT1A LTR MaLR -76 298 10 1 837 201 303 12 84 chr12 33139409 33139492 -88118038 + L2c LINE L2 3285 3361 -26 1 837 2082 57 10 38 chr12 33140217 33140508 -88117022 + L1_Mus1 LINE L1 6282 6564 -3 1 837 235 130 20 61 chr12 33140631 33140680 -88116850 - tRNA-Lys-AAG tRNA tRNA -29 47 1 1 837 532 209 17 34 chr12 33140745 33140864 -88116666 - PB1D10 SINE Alu 0 117 1 1 837 270 291 97 38 chr12 33141025 33141211 -88116319 + L1M5 LINE L1 5693 5889 -275 1 837 451 250 28 9 chr12 33141275 33141384 -88116146 - B1F SINE Alu -1 148 38 1 837 209 200 0 57 chr12 33142374 33142427 -88115103 + CT-rich Low_complexity Low_complexity 4 53 0 1 837 231 304 75 61 chr12 33142518 33142665 -88114865 + L2a LINE L2 3101 3249 -177 2 837 308 278 147 117 chr12 33142831 33142994 -88114536 + B3 SINE B2 21 216 0 2 837 423 288 131 80 chr12 33143550 33143901 -88113629 - Charlie1b DNA MER1_type -48 475 107 2 837 219 277 0 58 chr12 33143947 33144016 -88113514 + L2 LINE L2 1975 2039 -1380 2 837 434 265 125 20 chr12 33144619 33144819 -88112711 - L1MB5 LINE L1 -6 6168 5948 2 837 375 298 154 24 chr12 33144922 33145054 -88112476 - L1MB5 LINE L1 -356 5822 5665 2 837 299 96 0 19 chr12 33145054 33145107 -88112423 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 837 375 298 154 24 chr12 33145107 33145266 -88112264 - L1MB5 LINE L1 -514 5664 5493 2 837 189 94 0 0 chr12 33145270 33145302 -88112228 + (TTTAG)n Simple_repeat Simple_repeat 4 35 0 2 837 401 302 149 39 chr12 33145426 33146140 -88111390 - L1MD LINE L1 -847 5299 4510 2 837 966 60 0 0 chr12 33146140 33146274 -88111256 + (TC)n Simple_repeat Simple_repeat 2 135 0 2 837 401 302 149 39 chr12 33146274 33146351 -88111179 - L1MD LINE L1 -1637 4509 4421 2 837 286 288 130 103 chr12 33146353 33146665 -88110865 - MTEb LTR MaLR 0 379 3 2 837 7153 96 5 1 chr12 33147405 33148484 -88109046 - L1_Mm LINE L1 -1155 4728 3646 2 837 6869 82 6 1 chr12 33148480 33149842 -88107688 + L1_Mus1 LINE L1 5230 6567 0 2 837 292 335 143 18 chr12 33150273 33150497 -88107033 + MIR SINE MIR 3 260 -8 2 837 192 97 0 0 chr12 33150624 33150655 -88106875 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2 837 388 360 63 47 chr12 33151450 33151750 -88105780 + L1MEc LINE L1 20 324 -6076 2 837 299 297 90 17 chr12 33151836 33152124 -88105406 + L1MEc LINE L1 548 856 -5544 2 837 430 197 76 126 chr12 33152157 33152395 -88105135 + L1MEc LINE L1 951 1176 -5224 2 837 465 308 112 0 chr12 33152908 33153158 -88104372 + L1MA10 LINE L1 5490 5767 -412 2 837 289 319 28 71 chr12 33153198 33153481 -88104049 + L1MA10 LINE L1 5905 6327 -7 2 837 489 261 138 32 chr12 33153477 33153573 -88103957 + L1MA4 LINE L1 5665 5782 -518 2 837 441 0 0 0 chr12 33153573 33153622 -88103908 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 837 489 261 138 32 chr12 33153622 33153771 -88103759 + L1MA4 LINE L1 5783 5936 -364 2 837 2198 149 85 3 chr12 33153794 33154183 -88103347 + MTC LTR MaLR 1 421 0 2 837 225 0 0 0 chr12 33155296 33155321 -88102209 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 837 301 223 10 41 chr12 33155668 33155766 -88101764 + L1MA9 LINE L1 6218 6312 0 2 837 289 296 89 5 chr12 33155997 33156151 -88101379 + MLT2B4 LTR ERVL 83 255 -159 2 837 230 273 51 13 chr12 33156255 33156333 -88101197 + MLT2B4 LTR ERVL 454 534 -33 2 837 585 307 125 62 chr12 33156450 33156867 -88100663 + MLT1E2 LTR MaLR 142 584 -43 2 837 537 213 82 82 chr12 33157383 33157567 -88099963 + B4A SINE B4 3 186 -106 2 104 29364 115 24 16 chr12 33157854 33162052 -88095478 + L1_Mus1 LINE L1 177 4369 -1514 2 838 192 40 0 0 chr12 33162052 33162077 -88095453 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 838 29364 85 14 7 chr12 33162077 33164208 -88093322 + L1_Mus1 LINE L1 4370 6564 -3 2 838 195 232 0 0 chr12 33164228 33164284 -88093246 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 838 567 353 143 27 chr12 33164299 33165108 -88092422 - L2 LINE L2 -1091 2328 1426 2 838 617 267 20 0 chr12 33168082 33168228 -88089302 - B1_Mur1 SINE Alu 0 149 1 2 838 351 214 265 0 chr12 33168437 33168535 -88088995 - PB1 SINE Alu -2 125 2 2 838 37 0 0 0 chr12 33168539 33168576 -88088954 + AT_rich Low_complexity Low_complexity 1 37 0 2 838 522 260 39 0 chr12 33168756 33168883 -88088647 + ID_B1 SINE B4 84 215 -9 2 838 511 230 155 23 chr12 33169516 33169773 -88087757 - MTE2a LTR MaLR -12 367 1 2 838 291 197 66 0 chr12 33170153 33170214 -88087316 + ID4_ SINE ID 3 67 -16 2 838 303 183 24 12 chr12 33170232 33170315 -88087215 + GA-rich Low_complexity Low_complexity 1 84 0 2 838 2896 95 55 7 chr12 33170349 33170752 -88086778 + BGLII_Mus LTR ERVK 1 422 0 2 838 415 299 0 10 chr12 33170836 33170934 -88086596 - RSINE1 SINE B4 -67 98 2 2 838 287 130 19 0 chr12 33171703 33171757 -88085773 + (GGA)n Simple_repeat Simple_repeat 1 55 0 2 838 801 285 50 70 chr12 33173166 33173468 -88084062 + MER57E1 LTR ERV1 5 300 -72 2 838 441 0 0 0 chr12 33173914 33173963 -88083567 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 838 22 0 0 0 chr12 33174017 33174039 -88083491 + AT_rich Low_complexity Low_complexity 1 22 0 2 838 296 284 37 17 chr12 33174090 33174229 -88083301 - L1MC LINE L1 -297 5827 5679 2 838 622 288 64 79 chr12 33174232 33174560 -88082970 - LTR33 LTR ERVL -5 510 188 2 838 313 203 17 0 chr12 33174724 33174783 -88082747 + MLT1J LTR MaLR 73 132 -380 2 838 423 0 0 0 chr12 33175152 33175199 -88082331 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 838 860 259 0 6 chr12 33175214 33175381 -88082149 + B3 SINE B2 1 166 -50 2 838 299 298 0 11 chr12 33175744 33175839 -88081691 - RMER4B LTR ERVK -144 441 348 2 838 2363 346 24 21 chr12 33175842 33176874 -88080656 - RodERV21-int LTR ERV1 -155 4836 3802 2 838 375 272 69 141 chr12 33176890 33177237 -88080293 - RodERV21-int LTR ERV1 -1914 3077 2756 2 838 4218 125 96 8 chr12 33177769 33178495 -88079035 + L1_Mus1 LINE L1 341 1130 -5489 2 838 30042 101 32 5 chr12 33178472 33183718 -88073812 + L1_Mus1 LINE L1 1077 6570 0 2 838 462 300 70 57 chr12 33185152 33185608 -88071922 - RodERV21-int LTR ERV1 -2992 4099 3638 2 838 1723 211 36 39 chr12 33185935 33186265 -88071265 - RodERV21-int LTR ERV1 -2459 2532 2204 2 838 3084 252 28 8 chr12 33186257 33186985 -88070545 - RodERV21-int LTR ERV1 -2896 2095 1354 2 838 456 237 8 33 chr12 33187263 33187385 -88070145 - RodERV21-int LTR ERV1 -4872 119 1 2 838 27 73 0 0 chr12 33187486 33187541 -88069989 + AT_rich Low_complexity Low_complexity 1 55 0 2 838 3720 70 8 29 chr12 33188007 33188492 -88069038 - L1Md_F2 LINE L1 -4 6578 6104 2 838 3701 39 0 0 chr12 33188492 33188926 -88068604 + L1Md_F2 LINE L1 5656 6089 -493 2 838 23 54 0 0 chr12 33189357 33189394 -88068136 + AT_rich Low_complexity Low_complexity 1 37 0 2 838 22 0 0 0 chr12 33189838 33189860 -88067670 + AT_rich Low_complexity Low_complexity 1 22 0 2 838 762 113 0 0 chr12 33189965 33190080 -88067450 + (TC)n Simple_repeat Simple_repeat 1 115 0 2 838 501 17 0 0 chr12 33190081 33190139 -88067391 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 2 838 576 95 0 0 chr12 33190436 33190520 -88067010 + (TCC)n Simple_repeat Simple_repeat 3 86 0 2 838 1116 236 138 6 chr12 33190703 33191023 -88066507 + ORR1D2 LTR MaLR 1 362 -8 2 838 294 356 39 28 chr12 33191718 33191900 -88065630 - MIR SINE MIR -26 236 53 2 838 793 143 58 36 chr12 33192047 33192185 -88065345 - B1_Mur3 SINE Alu -6 143 3 2 838 2716 52 178 0 chr12 33192224 33192573 -88064957 + RLTR10A LTR ERVK 1 411 0 2 838 1412 161 9 22 chr12 33192591 33192820 -88064710 - URR1A DNA MER1_type 0 226 1 2 838 627 221 96 49 chr12 33193420 33193643 -88063887 - RMER13A LTR ERVK -194 433 183 2 838 235 372 30 37 chr12 33194397 33194531 -88062999 + Charlie15a DNA MER1_type 56 188 -36 2 838 682 91 84 4 chr12 33194531 33194642 -88062888 + B1_Mus2 SINE Alu 38 147 -1 2 838 426 85 0 0 chr12 33194644 33194703 -88062827 + (A)n Simple_repeat Simple_repeat 1 59 0 2 838 354 175 0 0 chr12 33194921 33194984 -88062546 - Lx4B LINE L1 -1028 6030 5968 2 838 19764 149 31 63 chr12 33194978 33198889 -88058641 - Lx4B LINE L1 -537 5340 1555 2 838 7741 66 6 2 chr12 33198917 33200061 -88057469 - L1_Mus2 LINE L1 0 6566 5418 2 838 1503 191 10 8 chr12 33200071 33200558 -88056972 - Lx4B LINE L1 -4404 1473 985 2 838 479 252 10 0 chr12 33201624 33201723 -88055807 + B3A SINE B2 1 100 -98 2 838 292 284 68 41 chr12 33202131 33202236 -88055294 - L1MEd LINE L1 -5627 492 382 2 838 288 0 0 0 chr12 33202236 33202268 -88055262 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 838 292 284 68 41 chr12 33202268 33202309 -88055221 - L1MEd LINE L1 -5738 381 342 2 838 454 251 81 81 chr12 33203001 33203187 -88054343 + B2_Mm2 SINE B2 2 187 -8 2 838 218 362 106 28 chr12 33204569 33204711 -88052819 + B4A SINE B4 90 242 -50 2 838 484 66 13 26 chr12 33204722 33204800 -88052730 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 2 838 24314 152 57 14 chr12 33204800 33209524 -88048006 - Lx4B LINE L1 -21 7037 2070 2 838 471 18 0 0 chr12 33209524 33209580 -88047950 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 838 24314 167 91 31 chr12 33209580 33210744 -88046786 - Lx4B LINE L1 -3808 2069 833 2 838 212 246 0 32 chr12 33211025 33211088 -88046442 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 838 2598 142 2 39 chr12 33211153 33211562 -88045968 - ORR1B1 LTR MaLR 0 394 1 2 838 211 355 110 7 chr12 33212156 33212292 -88045238 - MIR SINE MIR -65 197 48 2 838 2111 118 44 25 chr12 33212622 33212943 -88044587 - ORR1A2 LTR MaLR 0 327 1 2 838 812 193 231 6 chr12 33213615 33213797 -88043733 - ID_B1 SINE B4 0 224 2 2 838 35 24 0 0 chr12 33213912 33213954 -88043576 + AT_rich Low_complexity Low_complexity 1 42 0 2 838 8274 69 4 2 chr12 33214145 33215269 -88042261 - L1_Mus3 LINE L1 -7 6631 5506 2 838 30 0 0 0 chr12 33215269 33215299 -88042231 + AT_rich Low_complexity Low_complexity 1 30 0 2 838 2078 174 61 3 chr12 33217040 33217385 -88040145 - ORR1B2 LTR MaLR -2 365 1 2 838 282 210 11 69 chr12 33217760 33217847 -88039683 + MLT1J LTR MaLR 428 509 -3 2 838 2853 28 12 3 chr12 33218239 33218558 -88038972 - RLTRETN_Mm LTR ERVK 0 322 1 2 838 725 345 69 20 chr12 33218652 33218957 -88038573 - MLT1H LTR MaLR -211 338 19 2 838 297 51 0 0 chr12 33219121 33219160 -88038370 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 838 687 221 72 67 chr12 33219166 33219360 -88038170 - B3A SINE B2 -1 197 3 2 838 529 289 101 37 chr12 33219383 33219939 -88037591 - L1M2 LINE L1 -2986 3154 2536 2 838 297 87 0 115 chr12 33219943 33219995 -88037535 - ORR1D1 LTR MaLR 0 374 325 2 838 39266 10 1 2 chr12 33219995 33226367 -88031163 + L1Md_A LINE L1 1 5586 -297 2 838 9239 1 0 0 chr12 33226367 33227363 -88030167 + L1Md_A LINE L1 5587 6582 0 2 838 935 204 141 35 chr12 33227364 33227525 -88030005 - ORR1D1 LTR MaLR -32 342 146 2 838 3560 23 0 0 chr12 33227525 33227921 -88029609 + MTA_Mm LTR MaLR 1 396 0 2 838 9358 28 6 0 chr12 33227921 33229012 -88028518 + MTA_Mm-int LTR MaLR 1 1098 0 2 838 3521 28 0 0 chr12 33229012 33229408 -88028122 + MTA_Mm LTR MaLR 1 396 0 2 838 935 204 141 35 chr12 33229408 33229528 -88028002 - ORR1D1 LTR MaLR -229 145 31 2 838 316 253 11 0 chr12 33229745 33229836 -88027694 - L1M2c LINE L1 -4782 2007 1916 2 838 2004 201 89 7 chr12 33229834 33229950 -88027580 - RMER1B Other Other -2 1064 937 2 838 351 0 0 0 chr12 33229950 33229989 -88027541 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 838 2004 201 89 7 chr12 33229989 33230299 -88027231 - RMER1B Other Other -130 936 603 2 838 318 290 26 40 chr12 33231111 33231262 -88026268 - L1MEc LINE L1 -4539 1861 1713 2 838 1198 140 8 105 chr12 33231634 33231761 -88025769 + URR1B DNA MER1_type 1 124 -101 2 838 6110 81 2 0 chr12 33231761 33232553 -88024977 + Lx3_Mus LINE L1 6216 7009 0 2 838 1198 140 8 105 chr12 33232553 33232673 -88024857 + URR1B DNA MER1_type 125 224 -1 2 838 4391 168 126 19 chr12 33232872 33233800 -88023730 - RLTR25B LTR ERVK 0 1028 2 3 838 603 331 155 9 chr12 33233936 33234375 -88023155 - MLT1D LTR MaLR -2 503 1 3 838 272 373 40 0 chr12 33234917 33234937 -88022593 - RSINE1 SINE B4 -33 132 2 3 838 504 236 9 0 chr12 33234937 33235043 -88022487 - B3A SINE B2 -91 107 1 3 838 2719 110 15 17 chr12 33235094 33235502 -88022028 - MTB_Mm LTR MaLR 0 407 1 3 838 3390 75 2 16 chr12 33236269 33236714 -88020816 - L1_Mus1 LINE L1 0 6567 6129 3 838 306 238 46 10 chr12 33237583 33237669 -88019861 + PB1D10 SINE Alu 31 124 -3 3 838 252 77 0 0 chr12 33239594 33239633 -88017897 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 838 456 260 10 0 chr12 33239650 33239754 -88017776 - RSINE1 SINE B4 -56 109 5 3 838 388 250 90 16 chr12 33239799 33239921 -88017609 - RSINE1 SINE B4 -32 133 3 3 838 219 69 0 0 chr12 33239995 33240024 -88017506 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 3 838 1007 121 7 0 chr12 33240027 33240168 -88017362 + B1_Mur3 SINE Alu 2 143 -6 3 838 243 146 0 0 chr12 33240169 33240210 -88017320 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 838 1533 256 79 32 chr12 33242527 33243552 -88013978 + RMER1A Other Other 1 534 -532 3 838 2478 208 20 12 chr12 33243542 33244089 -88013441 + RMER1A Other Other 293 727 -303 3 838 915 127 401 0 chr12 33244205 33244491 -88013039 + RLTR47_MM LTR ERV1 131 532 0 3 838 1366 170 84 11 chr12 33244491 33244764 -88012766 + RMER1A Other Other 723 1015 -15 3 838 184 185 18 18 chr12 33245011 33245066 -88012464 + GA-rich Low_complexity Low_complexity 5 59 0 3 838 1620 0 0 0 chr12 33245066 33245246 -88012284 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 838 1771 168 39 49 chr12 33246318 33246706 -88010824 - ORR1C2 LTR MaLR 0 384 1 3 838 2504 81 0 42 chr12 33246825 33247185 -88010345 + L1Md_F2 LINE L1 6226 6570 -12 3 838 427 315 16 0 chr12 33248323 33248450 -88009080 - B1F SINE Alu -18 131 3 3 838 229 276 0 0 chr12 33248892 33248950 -88008580 - L1M2 LINE L1 -458 5842 5785 3 838 1961 137 19 33 chr12 33248951 33249313 -88008217 - ORR1B2 LTR MaLR -8 359 3 3 838 1632 133 215 0 chr12 33249746 33249896 -88007634 + ORR1C2 LTR MaLR 1 188 -196 3 838 238 43 0 80 chr12 33249896 33249946 -88007584 + (TCTCTG)n Simple_repeat Simple_repeat 4 49 0 3 838 1632 133 215 0 chr12 33249946 33250111 -88007419 + ORR1C2 LTR MaLR 189 383 -1 3 838 4484 80 14 0 chr12 33250339 33250915 -88006615 - MT2B2 LTR ERVL 0 584 1 3 838 702 289 38 46 chr12 33251001 33251479 -88006051 - L1M2 LINE L1 -811 5501 5029 3 838 1341 206 17 37 chr12 33251537 33251803 -88005727 - ORR1B2 LTR MaLR -56 311 52 3 838 2666 162 22 10 chr12 33251803 33252307 -88005223 - ORR1B2-int LTR MaLR -2 1507 998 3 838 632 101 18 18 chr12 33252306 33252417 -88005113 - ORR1B2 LTR MaLR -243 151 41 3 838 229 272 147 31 chr12 33253040 33253169 -88004361 + MIR SINE MIR 46 189 -73 3 838 255 303 66 62 chr12 33253417 33253628 -88003902 + MIR SINE MIR 50 261 -1 3 838 296 299 47 0 chr12 33253764 33253871 -88003659 - PB1D10 SINE Alu -5 112 1 3 838 393 351 45 13 chr12 33254412 33254568 -88002962 + RSINE1 SINE B4 4 164 -1 3 838 387 0 0 0 chr12 33254573 33254616 -88002914 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 838 368 288 88 0 chr12 33255081 33255206 -88002324 + MLT2B2 LTR ERVL 40 175 -340 3 838 315 275 66 44 chr12 33255567 33255704 -88001826 + B3A SINE B2 68 207 -9 3 838 427 227 191 16 chr12 33255733 33255921 -88001609 - MER63C DNA AcHobo -709 221 1 3 838 1139 261 47 23 chr12 33256513 33256855 -88000675 - ORR1E LTR MaLR -9 350 1 3 838 425 372 82 42 chr12 33258235 33258591 -87998939 + LTR33B LTR ERVL 132 501 -2 3 838 511 273 117 39 chr12 33259112 33259291 -87998239 - B3A SINE B2 0 198 6 3 838 241 286 16 125 chr12 33259315 33259443 -87998087 - Lx8 LINE L1 -2 7471 7358 3 838 23 33 0 0 chr12 33260174 33260204 -87997326 + AT_rich Low_complexity Low_complexity 1 30 0 3 838 367 261 11 11 chr12 33261407 33261500 -87996030 + Cheshire DNA MER1_type 2 94 -2326 3 838 289 220 0 0 chr12 33261505 33261564 -87995966 + Cheshire DNA MER1_type 2317 2375 -45 3 838 799 258 14 32 chr12 33261947 33262167 -87995363 - Tigger7 DNA MER2_type -2231 260 45 3 838 281 169 127 0 chr12 33262999 33263070 -87994460 - ORR1C2 LTR MaLR -304 80 1 3 838 996 296 49 2 chr12 33263374 33263781 -87993749 - MLT1D LTR MaLR 0 505 80 3 838 351 364 138 4 chr12 33263963 33264195 -87993335 - LTR16A LTR ERVL -168 283 21 3 838 620 113 51 157 chr12 33264198 33264376 -87993154 + ORR1C2 LTR MaLR 1 159 -225 3 838 548 243 276 6 chr12 33264444 33264614 -87992916 + B3 SINE B2 1 216 0 3 838 24 32 0 0 chr12 33264614 33264645 -87992885 + AT_rich Low_complexity Low_complexity 1 31 0 3 838 399 286 81 124 chr12 33265113 33265484 -87992046 + ORR1D2 LTR MaLR 1 355 -15 3 838 211 217 0 0 chr12 33265511 33265557 -87991973 + A-rich Low_complexity Low_complexity 2 47 0 3 838 441 167 250 0 chr12 33266862 33266958 -87990572 + PB1D9 SINE Alu 1 120 0 3 838 709 248 13 2 chr12 33267004 33267182 -87990348 - B3A SINE B2 -38 178 1 3 838 672 289 60 64 chr12 33267371 33267637 -87989893 + Tigger7 DNA MER2_type 70 334 -2157 3 838 2468 37 0 23 chr12 33268370 33268677 -87988853 - L1Md_F3 LINE L1 -14 6570 6271 3 838 2445 120 17 17 chr12 33272641 33273110 -87984420 - RMER6A LTR ERVK 0 756 325 3 838 328 264 151 0 chr12 33273092 33273198 -87984332 - B1_Mus2 SINE Alu -22 125 4 3 838 442 186 96 67 chr12 33273198 33273277 -87984253 - MT2B LTR ERVL -339 262 181 3 838 414 0 0 0 chr12 33273553 33273599 -87983931 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 838 1234 278 23 0 chr12 33273948 33274250 -87983280 + ORR1D2 LTR MaLR 9 317 -53 3 838 9895 67 8 2 chr12 33274250 33275539 -87981991 - L1Md_F2 LINE L1 -1213 4670 3375 3 838 4048 93 87 3 chr12 33275535 33276249 -87981281 + L1Md_F2 LINE L1 4668 5585 -298 3 838 7941 64 0 4 chr12 33276250 33277239 -87980291 + L1Md_F2 LINE L1 5587 6571 -11 3 838 1238 176 30 0 chr12 33277847 33278080 -87979450 + ORR1B2 LTR MaLR 1 240 -127 3 838 1433 198 209 21 chr12 33278132 33278616 -87978914 + RMER6C LTR ERVK 111 685 -5 3 838 479 167 0 40 chr12 33278613 33278713 -87978817 + ORR1B2 LTR MaLR 299 394 0 3 838 1601 197 110 34 chr12 33279817 33280200 -87977330 + MTC LTR MaLR 1 412 -9 3 838 636 195 16 0 chr12 33280912 33281035 -87976495 + ID_B1 SINE B4 12 136 -88 3 838 305 312 88 92 chr12 33281076 33281337 -87976193 - MLT1A0 LTR MaLR -46 319 60 3 838 2984 27 0 0 chr12 33281352 33281689 -87975841 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 838 4450 61 22 3 chr12 33281689 33282261 -87975269 + IAPEz-int LTR ERVK 4 587 -5894 3 838 454 66 0 32 chr12 33282293 33282356 -87975174 + IAPEz-int LTR ERVK 1359 1419 -5062 3 838 1876 111 4 4 chr12 33282345 33282607 -87974923 + IAPEz-int LTR ERVK 2236 2497 -5183 3 838 936 88 24 0 chr12 33282602 33282727 -87974803 + IAPEz-int LTR ERVK 4783 4910 -2770 3 838 21653 11 2 0 chr12 33282729 33285082 -87972448 + IAPEz-int LTR ERVK 4123 6481 0 3 838 2998 24 0 0 chr12 33285082 33285419 -87972111 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 838 1053 221 10 0 chr12 33286310 33286514 -87971016 - B3 SINE B2 -10 206 1 3 838 1073 140 0 6 chr12 33286692 33286872 -87970658 - Lx LINE L1 -2 6652 6474 3 838 330 261 21 52 chr12 33287390 33287487 -87970043 + B4A SINE B4 2 95 -197 3 838 708 128 124 29 chr12 33287488 33287625 -87969905 + B1_Mur4 SINE Alu 1 150 0 3 838 430 316 26 0 chr12 33287646 33287801 -87969729 + B4A SINE B4 82 240 -52 3 838 347 286 64 45 chr12 33287818 33287928 -87969602 + RSINE1 SINE B4 54 165 0 3 838 26 64 0 0 chr12 33288005 33288052 -87969478 + AT_rich Low_complexity Low_complexity 1 47 0 3 838 334 226 87 19 chr12 33289002 33289106 -87968424 - MTEb LTR MaLR -13 366 256 3 838 504 48 0 0 chr12 33291645 33291708 -87965822 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 838 286 284 34 0 chr12 33291776 33291864 -87965666 + Lx8 LINE L1 5816 5906 -1567 3 838 591 226 43 0 chr12 33292034 33292198 -87965332 - MTD-int LTR MaLR -1087 171 1 3 104 720 241 70 28 chr12 33292198 33292390 -87965140 - MTD LTR MaLR 0 419 219 3 839 1576 183 137 48 chr12 33292390 33292655 -87964875 + MTC LTR MaLR 1 268 -153 3 839 2750 83 57 20 chr12 33292655 33293061 -87964469 + BGLII LTR ERVK 1 421 0 3 839 1576 183 137 48 chr12 33293061 33293174 -87964356 + MTC LTR MaLR 269 413 -8 3 839 594 195 0 15 chr12 33294463 33294730 -87962800 + (CA)n Simple_repeat Simple_repeat 1 262 0 3 839 328 237 40 30 chr12 33294730 33294830 -87962700 - RMER15 LTR ERVL -24 551 451 3 839 232 247 0 18 chr12 33296130 33296197 -87961333 - MIR SINE MIR -113 163 92 3 839 1972 139 41 86 chr12 33296303 33296720 -87960810 + RMER10B LTR ERVL 1 398 0 3 839 684 195 0 0 chr12 33297328 33297492 -87960038 + (TG)n Simple_repeat Simple_repeat 2 165 0 3 839 411 291 43 19 chr12 33297496 33297657 -87959873 - B3A SINE B2 -17 181 17 3 839 277 358 92 0 chr12 33298468 33298577 -87958953 + MLT1E3 LTR MaLR 229 347 -277 3 839 529 237 115 55 chr12 33299502 33299685 -87957845 - B3A SINE B2 0 198 5 3 839 224 347 30 15 chr12 33299874 33300008 -87957522 + MIRc SINE MIR 3 139 -69 3 839 782 156 14 14 chr12 33301612 33301755 -87955775 + B1_Mm SINE Alu 5 147 0 3 839 23 0 0 0 chr12 33302193 33302216 -87955314 + AT_rich Low_complexity Low_complexity 1 23 0 3 839 441 116 0 0 chr12 33302720 33302789 -87954741 + (CCA)n Simple_repeat Simple_repeat 1 69 0 3 839 218 317 0 0 chr12 33302968 33303028 -87954502 - ID4 SINE ID 0 83 24 3 839 184 91 45 0 chr12 33303064 33303108 -87954422 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 3 839 359 183 14 0 chr12 33303122 33303193 -87954337 + B3A SINE B2 1 72 -126 3 839 222 37 0 0 chr12 33303210 33303237 -87954293 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 839 25 51 0 0 chr12 33303247 33303286 -87954244 + AT_rich Low_complexity Low_complexity 1 39 0 3 839 1116 295 75 35 chr12 33303295 33303839 -87953691 - L1M2 LINE L1 -861 5282 4717 3 839 2270 139 65 3 chr12 33303839 33304206 -87953324 + ORR1B1 LTR MaLR 5 394 0 3 839 366 171 0 0 chr12 33304335 33304405 -87953125 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 839 401 273 173 0 chr12 33304408 33304547 -87952983 - RSINE1 SINE B4 0 165 3 3 839 26 30 0 0 chr12 33304563 33304596 -87952934 + AT_rich Low_complexity Low_complexity 1 33 0 3 839 590 295 27 21 chr12 33304609 33304796 -87952734 - B3A SINE B2 -10 188 1 4 839 249 274 0 0 chr12 33304854 33304916 -87952614 - B3A SINE B2 -39 159 98 4 839 355 250 63 24 chr12 33305107 33305234 -87952296 - L1_Mur1 LINE L1 -4140 1746 1615 4 839 369 109 0 0 chr12 33305238 33305293 -87952237 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 4 839 715 210 42 0 chr12 33306366 33306509 -87951021 + B1_Mur1 SINE Alu 1 149 0 4 839 221 244 0 0 chr12 33307781 33307822 -87949708 + polypurine Low_complexity Low_complexity 1 41 0 4 839 27 29 0 0 chr12 33309465 33309499 -87948031 + AT_rich Low_complexity Low_complexity 1 34 0 4 839 288 306 36 9 chr12 33309520 33309632 -87947898 - B3 SINE B2 -13 203 89 4 839 369 291 182 23 chr12 33309694 33309870 -87947660 - RMER21B LTR ERV1 -275 567 364 4 839 833 154 0 13 chr12 33309890 33310048 -87947482 + CT-rich Low_complexity Low_complexity 4 159 0 4 839 392 226 0 70 chr12 33310151 33310251 -87947279 - B3 SINE B2 -123 93 1 4 839 23 0 0 0 chr12 33310404 33310427 -87947103 + AT_rich Low_complexity Low_complexity 1 23 0 4 839 2103 216 11 11 chr12 33310584 33311043 -87946487 - Lx2B LINE L1 -8 6992 6534 4 839 1130 178 4 33 chr12 33311045 33311289 -87946241 - Lx2B LINE L1 -687 6313 6077 4 839 414 0 0 0 chr12 33311988 33312034 -87945496 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 839 680 231 7 15 chr12 33312373 33312509 -87945021 + B1_Mur3 SINE Alu 2 136 -13 4 839 854 266 58 28 chr12 33312764 33313158 -87944372 + L1M4b LINE L1 1361 1766 -5568 4 839 522 172 0 0 chr12 33313235 33313334 -87944196 + (TATG)n Simple_repeat Simple_repeat 1 99 0 4 839 459 304 40 97 chr12 33313612 33313911 -87943619 + Lx8 LINE L1 7190 7471 -2 4 839 5932 58 22 9 chr12 33313988 33314757 -87942773 - L1Md_F2 LINE L1 0 6582 5804 4 839 701 219 84 19 chr12 33314894 33315048 -87942482 - B3A SINE B2 -33 165 2 4 839 236 196 73 130 chr12 33315063 33315186 -87942344 + L1M4b LINE L1 1987 2102 -4906 4 839 1431 204 75 47 chr12 33315586 33315990 -87941540 + MTD LTR MaLR 2 398 -21 4 839 265 240 137 37 chr12 33316106 33316296 -87941234 - L1MEc LINE L1 -5484 916 708 4 839 1395 277 39 28 chr12 33316732 33316806 -87940724 - RMER5 LTR ERV1 -20 514 442 4 839 234 0 0 0 chr12 33316806 33316832 -87940698 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 839 1395 277 39 28 chr12 33316832 33317265 -87940265 - RMER5 LTR ERV1 -93 441 1 4 839 3735 43 57 0 chr12 33318401 33318871 -87938659 + L1Md_F2 LINE L1 6086 6582 0 4 839 874 287 38 66 chr12 33320447 33320794 -87936736 + ORR1E LTR MaLR 1 337 -22 4 839 552 264 69 69 chr12 33320822 33321082 -87936448 - MER2 DNA MER2_type 0 345 86 4 839 261 0 0 0 chr12 33321530 33321559 -87935971 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 839 333 0 0 0 chr12 33321559 33321595 -87935935 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 839 189 0 0 0 chr12 33321864 33321885 -87935645 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 839 234 0 0 0 chr12 33321884 33321910 -87935620 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 839 527 220 45 8 chr12 33321914 33322047 -87935483 - B3 SINE B2 -13 203 66 4 839 305 331 74 35 chr12 33324153 33324410 -87933120 - RLTR14 LTR ERV1 0 382 116 4 839 677 296 103 26 chr12 33324545 33324847 -87932683 - RLTR14-int LTR ERV1 0 5317 4993 4 839 751 288 57 51 chr12 33324866 33325236 -87932294 - RLTR14-int LTR ERV1 -1713 3604 3233 4 839 354 377 49 14 chr12 33326132 33326498 -87931032 - RLTR14-int LTR ERV1 -2900 2417 2039 4 839 31307 87 85 17 chr12 33327712 33333641 -87923889 - L1Md_F2 LINE L1 -12 6570 244 4 839 227 97 0 0 chr12 33333643 33333674 -87923856 - L1Md_F2 LINE L1 -6262 376 346 4 839 1164 71 0 0 chr12 33333859 33334000 -87923530 + B1_Mus2 SINE Alu 1 141 -6 4 839 294 87 0 0 chr12 33334002 33334048 -87923482 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 839 936 301 19 95 chr12 33334483 33334968 -87922562 - RLTR14-int LTR ERV1 -4868 449 2 4 839 656 54 11 0 chr12 33335489 33335581 -87921949 + L1_Mus2 LINE L1 6474 6566 0 4 839 260 171 130 13 chr12 33335676 33335753 -87921777 - PB1D9 SINE Alu -2 118 33 4 839 414 0 0 0 chr12 33335766 33335812 -87921718 + (TTA)n Simple_repeat Simple_repeat 3 48 0 4 839 2658 233 9 19 chr12 33336276 33336813 -87920717 + Lx6 LINE L1 6925 7456 -4 4 839 243 269 81 24 chr12 33336887 33337006 -87920524 + MIR SINE MIR 108 225 -43 4 839 673 211 35 0 chr12 33337225 33337367 -87920163 + ORR1D1 LTR MaLR 5 151 -223 4 839 230 143 58 58 chr12 33337370 33337422 -87920108 + B1_Mus1 SINE Alu 8 59 -89 4 839 528 220 0 0 chr12 33337457 33337566 -87919964 + B1_Mus2 SINE Alu 39 147 0 4 839 1029 58 0 28 chr12 33337583 33337726 -87919804 + B1_Mus1 SINE Alu 10 148 0 4 839 854 209 11 11 chr12 33337779 33337958 -87919572 + ORR1D1 LTR MaLR 141 319 -55 4 839 300 287 0 0 chr12 33337971 33338100 -87919430 + (TATG)n Simple_repeat Simple_repeat 1 129 0 4 839 741 277 17 0 chr12 33338100 33338277 -87919253 - B3 SINE B2 -13 203 24 4 839 1819 236 110 22 chr12 33338376 33338840 -87918690 - Lx6 LINE L1 -5 7455 6951 4 839 3232 180 68 27 chr12 33338842 33339542 -87917988 - Lx6 LINE L1 -1455 6005 5264 4 839 228 86 0 0 chr12 33339542 33339577 -87917953 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 839 3232 178 73 24 chr12 33339577 33339647 -87917883 - Lx6 LINE L1 -617 5263 5195 4 839 2026 148 26 3 chr12 33339645 33339990 -87917540 + L1_Mur3 LINE L1 4447 4799 -1081 4 839 2456 145 60 2 chr12 33339983 33340419 -87917111 + L1_Mur3 LINE L1 2080 2540 -3340 4 839 2904 161 57 15 chr12 33340415 33341012 -87916518 + L1_Mur3 LINE L1 2698 3319 -2561 4 839 3071 154 142 114 chr12 33341018 33341854 -87915676 - RMER19B LTR ERVK -42 860 1 4 839 23 86 0 0 chr12 33341855 33341913 -87915617 + AT_rich Low_complexity Low_complexity 1 58 0 4 839 419 270 55 30 chr12 33343439 33343603 -87913927 + L1_Mur3 LINE L1 2606 2773 -3107 4 839 1845 268 67 13 chr12 33343600 33344287 -87913243 + L1_Mur3 LINE L1 4230 4953 -927 4 839 507 138 0 0 chr12 33344294 33344381 -87913149 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 839 334 285 52 63 chr12 33344391 33344582 -87912948 + Lx9 LINE L1 5785 5973 -1671 4 839 369 109 0 0 chr12 33344647 33344702 -87912828 - ORR1D1 LTR MaLR 0 374 320 4 839 1568 222 57 3 chr12 33344771 33345155 -87912375 - RMER20A LTR ERVK -108 408 4 4 839 1062 187 187 0 chr12 33345203 33345476 -87912054 - ORR1D1 LTR MaLR -50 324 1 4 839 633 215 8 8 chr12 33345609 33345731 -87911799 + Lx8 LINE L1 6233 6354 -1119 4 839 733 79 0 17 chr12 33348276 33348392 -87909138 + (GGGA)n Simple_repeat Simple_repeat 4 117 0 4 839 925 290 60 17 chr12 33349335 33349637 -87907893 - MER2 DNA MER2_type -13 332 18 4 839 228 67 0 0 chr12 33350654 33350684 -87906846 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 839 180 0 0 0 chr12 33351233 33351253 -87906277 + (A)n Simple_repeat Simple_repeat 1 20 0 4 839 321 295 107 23 chr12 33351703 33351880 -87905650 - L1M5 LINE L1 -376 5803 5612 4 839 385 282 44 28 chr12 33352121 33352303 -87905227 + L1MD LINE L1 4205 4389 -1757 4 839 618 218 0 0 chr12 33352303 33352459 -87905071 + (TA)n Simple_repeat Simple_repeat 1 156 0 4 839 2060 264 51 67 chr12 33352482 33353167 -87904363 - RMER1C Other Other -309 1033 360 4 839 1174 289 39 157 chr12 33353167 33353989 -87903541 - RMER1C Other Other -607 735 11 4 839 297 306 126 26 chr12 33354464 33354615 -87902915 + L1M5 LINE L1 4775 4940 -1206 4 839 370 281 48 24 chr12 33354967 33355091 -87902439 + L1ME1 LINE L1 5993 6119 -60 4 839 397 118 0 73 chr12 33355210 33355292 -87902238 + B1_Mur4 SINE Alu 74 149 -1 4 839 1133 11 0 67 chr12 33355717 33355910 -87901620 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 4 839 815 130 11 33 chr12 33355910 33356087 -87901443 + CT-rich Low_complexity Low_complexity 1 174 0 4 839 272 263 80 7 chr12 33356230 33356368 -87901162 - L1MC5 LINE L1 -142 7819 7672 4 839 6764 209 36 36 chr12 33356432 33356489 -87901041 - Lx5 LINE L1 -4 7046 6990 4 839 180 0 0 0 chr12 33356489 33356509 -87901021 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 4 839 19907 170 25 42 chr12 33356509 33361521 -87896009 - Lx5 LINE L1 -61 6989 2061 4 839 420 20 0 0 chr12 33361527 33361576 -87895954 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 839 327 259 0 9 chr12 33361586 33361695 -87895835 - Lx5 LINE L1 -6702 1026 919 4 839 501 239 145 21 chr12 33361904 33362049 -87895481 - Lx8 LINE L1 -433 7040 6878 4 839 2662 90 45 0 chr12 33362154 33362533 -87894997 + L1_Mus3 LINE L1 6240 6635 -3 4 839 31 92 0 0 chr12 33362613 33362700 -87894830 + AT_rich Low_complexity Low_complexity 1 87 0 4 839 296 247 164 76 chr12 33364229 33364400 -87893130 - L2a LINE L2 -36 3390 3205 4 839 376 313 81 32 chr12 33364731 33364952 -87892578 - LTR16E2 LTR ERVL -2 566 335 4 839 237 291 36 72 chr12 33365387 33365498 -87892032 + ORR1E LTR MaLR 96 202 -157 4 839 673 227 0 8 chr12 33365619 33365752 -87891778 + MT2A LTR ERVL 1 132 -401 4 839 525 221 8 8 chr12 33365739 33365862 -87891668 + MT2A LTR ERVL 85 207 -326 4 839 2797 58 3 8 chr12 33365905 33366287 -87891243 + MTA_Mm LTR MaLR 1 380 -16 4 839 636 189 18 0 chr12 33366292 33366433 -87891097 + MT2A LTR ERVL 347 543 -58 4 839 259 59 0 29 chr12 33366676 33366711 -87890819 + Ricksha_c DNA MuDR 875 908 -1140 4 839 2027 170 29 13 chr12 33366765 33367141 -87890389 - RLTR14 LTR ERV1 0 382 1 4 839 2250 85 3 3 chr12 33367564 33367882 -87889648 + L1_Mus2 LINE L1 6249 6566 0 4 839 297 0 0 0 chr12 33368116 33368149 -87889381 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 839 369 0 0 0 chr12 33368149 33368189 -87889341 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 839 1224 134 13 36 chr12 33368722 33368947 -87888583 - URR1A DNA MER1_type 0 226 7 4 839 249 291 39 0 chr12 33369442 33369545 -87887985 + LTR33 LTR ERVL 395 501 -14 4 839 301 325 83 64 chr12 33371323 33371527 -87886003 + LTR88c LTR Genie? 149 356 -506 4 839 541 226 98 21 chr12 33373255 33373449 -87884081 - MER2 DNA MER2_type -21 324 116 4 839 192 40 0 0 chr12 33373487 33373512 -87884018 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 4 839 228 319 46 59 chr12 33373582 33373735 -87883795 - MIRb SINE MIR -64 204 54 4 839 688 217 93 72 chr12 33373807 33373826 -87883704 - B3A SINE B2 0 198 183 4 839 414 0 0 0 chr12 33373826 33373872 -87883658 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 839 688 217 93 72 chr12 33373872 33374046 -87883484 - B3A SINE B2 -16 182 1 4 839 408 215 150 20 chr12 33374089 33374236 -87883294 - MIR SINE MIR -36 226 61 4 839 244 299 81 36 chr12 33374426 33374537 -87882993 + MIRc SINE MIR 53 168 -100 4 839 1637 150 52 3 chr12 33375200 33375508 -87882022 + ORR1B2 LTR MaLR 45 367 0 5 839 2463 73 35 3 chr12 33375787 33376104 -87881426 + ORR1A2 LTR MaLR 1 327 0 5 839 3523 108 79 26 chr12 33378649 33379255 -87878275 - RLTR33 LTR ERVK -1 677 40 5 839 519 60 0 0 chr12 33379373 33379440 -87878090 + (GAA)n Simple_repeat Simple_repeat 2 68 0 5 839 324 293 101 31 chr12 33379878 33380195 -87877335 + L1MC LINE L1 2797 3135 -3011 5 839 513 240 56 11 chr12 33380274 33380454 -87877076 - B4A SINE B4 0 292 96 5 839 3411 229 81 39 chr12 33380531 33381445 -87876085 - RMER1C Other Other -52 1290 204 5 839 963 277 40 7 chr12 33381727 33382003 -87875527 - RMER1C Other Other -1053 289 5 5 839 4183 71 26 13 chr12 33382119 33382734 -87874796 - MusHAL1 LINE L1 -1850 862 240 5 839 850 268 109 19 chr12 33382740 33383006 -87874524 - B4A SINE B4 -2 290 1 5 839 316 358 82 26 chr12 33384177 33384444 -87873086 + MLT1J LTR MaLR 17 298 -214 5 839 24 0 0 0 chr12 33384904 33384928 -87872602 + AT_rich Low_complexity Low_complexity 1 24 0 5 839 605 265 59 0 chr12 33385151 33385287 -87872243 - RSINE1 SINE B4 -13 152 9 5 839 409 222 121 0 chr12 33385645 33385744 -87871786 - B1F1 SINE Alu -14 135 25 5 839 4482 162 56 64 chr12 33385744 33386653 -87870877 + RMER19B LTR ERVK 1 902 0 5 839 559 235 88 7 chr12 33386694 33386831 -87870699 - B1F SINE Alu 0 149 2 5 839 2491 186 84 4 chr12 33387577 33388079 -87869451 + Lx2B LINE L1 6459 7000 0 5 839 213 125 89 0 chr12 33388388 33388444 -87869086 + (GTTTG)n Simple_repeat Simple_repeat 4 64 0 5 839 1423 219 90 19 chr12 33388904 33389280 -87868250 + MTD LTR MaLR 3 405 -14 5 839 462 300 68 122 chr12 33389289 33389518 -87868012 - L1MEf LINE L1 -1746 4400 4173 5 839 1125 62 7 40 chr12 33389518 33389670 -87867860 - B1_Mus2 SINE Alu 0 147 1 5 839 462 300 68 122 chr12 33389670 33389884 -87867646 - L1MEf LINE L1 -1974 4172 3981 5 839 22 35 0 0 chr12 33389906 33389935 -87867595 + AT_rich Low_complexity Low_complexity 1 29 0 5 839 586 293 106 17 chr12 33390097 33390599 -87866931 - L1MEf LINE L1 -3617 2529 1963 5 839 297 271 188 0 chr12 33390687 33390783 -87866747 - PB1D10 SINE Alu -3 114 1 5 839 328 337 83 51 chr12 33390793 33391265 -87866265 - L1MEf LINE L1 -4277 1965 1479 5 839 1155 81 0 0 chr12 33393598 33393758 -87863772 + B2_Mm2 SINE B2 2 161 -34 5 839 360 0 0 0 chr12 33393758 33393798 -87863732 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 839 1660 212 58 14 chr12 33394459 33394823 -87862707 + MTC LTR MaLR 1 380 -41 5 839 2792 44 0 3 chr12 33395966 33396334 -87861196 - MTA_Mm LTR MaLR 0 396 30 5 839 317 147 72 14 chr12 33398922 33398991 -87858539 + MTC LTR MaLR 342 414 -5 5 839 602 273 142 38 chr12 33399137 33399236 -87858294 + B4A SINE B4 8 132 -160 5 839 1346 167 224 13 chr12 33399236 33399539 -87857991 - ORR1B2 LTR MaLR 0 367 1 5 839 602 273 142 38 chr12 33399539 33399679 -87857851 + B4A SINE B4 133 272 -20 5 839 405 0 0 0 chr12 33400436 33400481 -87857049 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 839 194 91 0 29 chr12 33400926 33400960 -87856570 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 5 839 219 36 0 0 chr12 33401606 33401634 -87855896 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 839 310 236 0 0 chr12 33403016 33403088 -87854442 - L1M3 LINE L1 -482 5707 5636 5 839 358 215 187 28 chr12 33403086 33403268 -87854262 + L1M3 LINE L1 4907 5117 -1023 5 839 255 79 0 0 chr12 33403991 33404029 -87853501 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 839 189 0 0 0 chr12 33404076 33404097 -87853433 + (CCA)n Simple_repeat Simple_repeat 2 22 0 5 839 21 0 0 0 chr12 33404483 33404504 -87853026 + AT_rich Low_complexity Low_complexity 1 21 0 5 839 528 236 0 0 chr12 33404612 33404722 -87852808 + B1_Mur1 SINE Alu 40 149 0 5 839 21853 17 0 4 chr12 33404872 33407372 -87850158 + L1Md_A LINE L1 3098 5586 -297 5 839 8457 32 7 0 chr12 33407372 33408359 -87849171 + L1Md_A LINE L1 5587 6580 -2 5 839 1463 221 51 32 chr12 33408359 33408422 -87849108 + L1M3 LINE L1 5616 5696 -616 5 839 721 263 32 80 chr12 33408468 33408782 -87848748 + Lx9 LINE L1 7136 7434 -210 5 839 393 39 0 0 chr12 33408792 33408843 -87848687 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 839 635 142 15 15 chr12 33408843 33408979 -87848551 + GA-rich Low_complexity Low_complexity 2 137 0 5 839 1031 82 7 0 chr12 33408983 33409130 -87848400 + (GAA)n Simple_repeat Simple_repeat 3 150 0 5 839 257 255 73 36 chr12 33409582 33409692 -87847838 + MTD LTR MaLR 1 114 -305 5 839 405 0 0 0 chr12 33409692 33409737 -87847793 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 839 423 0 0 0 chr12 33409737 33409783 -87847747 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 839 394 198 78 44 chr12 33409783 33409873 -87847657 - PB1D9 SINE Alu -11 109 17 5 839 952 236 63 80 chr12 33409880 33410180 -87847350 + MTD LTR MaLR 111 405 -14 5 839 656 300 33 37 chr12 33410563 33410833 -87846697 + B4A SINE B4 1 269 -23 5 839 564 116 0 0 chr12 33410840 33410926 -87846604 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 839 673 258 86 36 chr12 33411419 33411697 -87845833 + B4A SINE B4 1 292 0 5 839 270 0 0 0 chr12 33411706 33411736 -87845794 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 839 895 277 113 60 chr12 33411807 33412160 -87845370 + MTEa LTR MaLR 1 372 -7 5 839 606 245 58 6 chr12 33412549 33412705 -87844825 - B3A SINE B2 -17 181 18 5 839 361 283 24 55 chr12 33412713 33412840 -87844690 + L1MCc LINE L1 98 220 -6203 5 839 231 341 16 39 chr12 33412851 33412979 -87844551 + L1MCc LINE L1 278 402 -6021 5 839 227 214 0 48 chr12 33414813 33414916 -87842614 + (TA)n Simple_repeat Simple_repeat 1 98 0 5 839 952 359 85 42 chr12 33416669 33416724 -87840806 + FordPrefect DNA Tip100 421 473 -1210 5 839 2037 121 68 9 chr12 33416724 33417050 -87840480 - ORR1A1 LTR MaLR 0 346 2 5 839 952 359 85 42 chr12 33417050 33417383 -87840147 + FordPrefect DNA Tip100 474 822 -861 5 839 2902 41 12 0 chr12 33417383 33417725 -87839805 + ORR1A1 LTR MaLR 1 346 0 5 839 13982 55 14 2 chr12 33417725 33419497 -87838033 + ORR1A1-int LTR MaLR 1 1792 0 5 839 2837 58 0 3 chr12 33419497 33419844 -87837686 + ORR1A1 LTR MaLR 1 346 0 5 839 952 359 85 42 chr12 33419844 33420183 -87837347 + FordPrefect DNA Tip100 823 1180 -503 5 839 532 291 172 25 chr12 33420203 33420569 -87836961 + FordPrefect DNA Tip100 1241 1660 -23 5 839 1150 197 37 0 chr12 33420594 33420812 -87836718 - URR1A DNA MER1_type 0 226 1 5 839 499 182 8 28 chr12 33420818 33420942 -87836588 - ORR1B1 LTR MaLR -239 155 30 5 839 600 242 0 0 chr12 33420918 33421042 -87836488 - URR1A DNA MER1_type -102 124 1 5 839 8422 79 7 35 chr12 33421323 33423037 -87834493 + L1VL4 LINE L1 389 2043 -1516 5 104 13590 142 20 9 chr12 33423033 33426111 -87831419 + Lx LINE L1 3537 6650 -4 5 840 673 262 112 35 chr12 33426471 33426901 -87830629 - L1MA4 LINE L1 -1647 5997 5532 5 840 4483 118 55 14 chr12 33426912 33427633 -87829897 + Lx2 LINE L1 6246 6996 -1 5 840 2860 274 94 45 chr12 33427716 33428695 -87828835 - L1MA4 LINE L1 -819 5324 4308 5 840 342 0 0 0 chr12 33428695 33428733 -87828797 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 840 2860 274 94 45 chr12 33428733 33429212 -87828318 - L1MA4 LINE L1 -1836 4307 3796 5 840 207 0 0 0 chr12 33429223 33429246 -87828284 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 840 25229 154 38 27 chr12 33429246 33435390 -87822140 - Lx5 LINE L1 -15 7035 834 5 840 294 236 11 22 chr12 33435923 33436014 -87821516 - L1MA4 LINE L1 -2388 3755 3666 5 840 409 260 121 23 chr12 33435998 33436171 -87821359 - L1_Mur3 LINE L1 -3509 2371 2182 5 840 1741 226 151 29 chr12 33436176 33436759 -87820771 - Lx9 LINE L1 -7 7637 6984 5 840 1215 41 0 0 chr12 33436759 33436905 -87820625 + B1_Mus2 SINE Alu 2 147 0 5 840 519 313 81 40 chr12 33436968 33437424 -87820106 - L1_Rod LINE L1 -3663 2184 1710 5 840 1314 51 2 3 chr12 33437731 33437928 -87819602 - ORR1A1-int LTR MaLR -202 1590 1420 5 840 373 280 76 49 chr12 33438189 33438414 -87819116 + L2a LINE L2 3187 3417 -9 5 840 371 323 51 0 chr12 33439862 33440020 -87817510 - RMER15 LTR ERVL -36 539 374 5 840 304 286 0 0 chr12 33443277 33443340 -87814190 + MIR SINE MIR 8 70 -192 5 840 1051 275 106 97 chr12 33443762 33444239 -87813291 + MLT2B4 LTR ERVL 1 500 -56 5 840 2686 92 0 0 chr12 33444239 33444566 -87812964 - ORR1A2 LTR MaLR 0 327 1 5 840 1051 275 106 97 chr12 33444566 33444635 -87812895 + MLT2B4 LTR ERVL 501 552 -4 5 840 209 352 69 23 chr12 33444667 33444798 -87812732 + MIR SINE MIR 120 256 -6 5 840 315 313 56 89 chr12 33444835 33445014 -87812516 - MER90 LTR ERV1 -81 533 361 5 840 547 326 77 91 chr12 33445029 33445468 -87812062 + MLT1C LTR MaLR 34 466 -1 5 840 738 313 91 0 chr12 33445485 33445760 -87811770 - MER90 LTR ERV1 -273 302 3 5 840 335 296 184 40 chr12 33446668 33446974 -87810556 - MLT1L LTR MaLR 0 610 261 5 840 241 265 0 0 chr12 33447621 33447670 -87809860 - MLT1F2 LTR MaLR -2 558 510 5 840 314 232 118 59 chr12 33448152 33448271 -87809259 + MLT1A1 LTR MaLR 270 395 -13 5 840 447 306 124 25 chr12 33450031 33450192 -87807338 + Tigger7 DNA MER2_type 54 230 -2261 5 840 573 344 13 13 chr12 33450205 33450435 -87807095 + Tigger7 DNA MER2_type 2256 2484 -7 5 840 625 302 83 22 chr12 33450450 33450680 -87806850 + MLT2D LTR ERVL 5 248 -166 5 840 384 22 0 0 chr12 33451233 33451278 -87806252 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 5 840 243 146 0 0 chr12 33451278 33451319 -87806211 + (TCC)n Simple_repeat Simple_repeat 3 43 0 5 840 420 236 56 11 chr12 33452139 33452229 -87805301 - RSINE1 SINE B4 -70 95 2 5 840 274 210 33 100 chr12 33452241 33452331 -87805199 - MLT1F-int LTR MaLR -964 525 442 5 840 210 330 109 8 chr12 33452473 33452592 -87804938 + MIR SINE MIR 107 237 -25 5 840 197 325 58 11 chr12 33453837 33453924 -87803606 - MIR SINE MIR -70 192 102 5 840 238 280 26 13 chr12 33454007 33454083 -87803447 + CT-rich Low_complexity Low_complexity 2 78 0 5 840 320 274 88 0 chr12 33455435 33455537 -87801993 + MIR SINE MIR 46 156 -106 5 840 1435 171 5 0 chr12 33456036 33456258 -87801272 - URR1B DNA MER1_type -2 223 1 5 840 210 275 71 14 chr12 33456981 33457051 -87800479 - L2a LINE L2 -1 3425 3352 5 840 610 302 17 120 chr12 33457068 33457309 -87800221 + Tigger7 DNA MER2_type 18 233 -2258 5 840 448 247 0 0 chr12 33457310 33457403 -87800127 - L1_Mur3 LINE L1 -7096 616 524 5 840 247 313 45 0 chr12 33457950 33458017 -87799513 - B1F2 SINE Alu -79 70 1 5 840 547 244 66 15 chr12 33458017 33458095 -87799435 - B4A SINE B4 -207 85 1 5 840 245 254 209 47 chr12 33459617 33459914 -87797616 - L1MEc LINE L1 -3167 3154 2810 5 840 287 306 0 0 chr12 33460032 33460094 -87797436 - ID4 SINE ID -10 73 12 5 840 302 287 9 9 chr12 33460095 33460204 -87797326 - L1MEc LINE L1 -3565 2756 2648 5 840 936 108 0 0 chr12 33460317 33460456 -87797074 + (TCC)n Simple_repeat Simple_repeat 2 140 0 5 840 196 53 26 26 chr12 33461158 33461197 -87796333 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 6 840 7170 115 33 1 chr12 33461221 33462255 -87795275 - Lx2 LINE L1 0 6997 5931 6 840 18325 146 5 3 chr12 33462266 33465216 -87792314 - L1_Mm LINE L1 -126 5757 2803 6 840 7806 26 20 1 chr12 33465210 33466646 -87790884 - L1Md_F2 LINE L1 0 6582 5111 6 840 10279 103 28 19 chr12 33466647 33468848 -87788682 - L1VL4 LINE L1 -1093 2466 248 6 840 514 251 48 32 chr12 33468903 33469112 -87788418 - L1MEc LINE L1 -3829 2492 2284 5 840 21 71 0 0 chr12 33469201 33469243 -87788287 + AT_rich Low_complexity Low_complexity 1 42 0 6 840 384 22 0 0 chr12 33469352 33469397 -87788133 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 840 306 284 97 14 chr12 33469412 33469619 -87787911 - L1M3 LINE L1 -537 5754 5520 6 840 210 208 0 0 chr12 33469623 33469671 -87787859 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 840 566 281 91 20 chr12 33469876 33470257 -87787273 - L1MEc LINE L1 -4812 1696 1299 5 840 447 19 0 0 chr12 33470676 33470728 -87786802 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 840 474 18 0 0 chr12 33470728 33470783 -87786747 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 6 840 382 261 0 107 chr12 33470786 33470889 -87786641 - PB1D9 SINE Alu -26 94 3 6 840 281 299 95 21 chr12 33470945 33471231 -87786299 + MLT1E1A LTR MaLR 102 503 -151 6 840 464 314 28 28 chr12 33471229 33471406 -87786124 + MLT1E1A LTR MaLR 462 638 -42 6 840 1200 235 130 33 chr12 33471642 33471930 -87785600 + MTEa LTR MaLR 1 303 -76 6 840 207 0 0 0 chr12 33471930 33471953 -87785577 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 840 1200 235 130 33 chr12 33471953 33471994 -87785536 + MTEa LTR MaLR 304 360 -19 6 840 285 304 25 0 chr12 33472006 33472085 -87785445 - MLT1A LTR MaLR -290 84 4 6 840 723 292 150 52 chr12 33472120 33472715 -87784815 - L1MEc LINE L1 -5566 836 184 5 840 434 267 203 58 chr12 33472831 33473300 -87784230 - L1MEf LINE L1 -4259 1941 1405 6 840 384 22 0 0 chr12 33474620 33474665 -87782865 + (T)n Simple_repeat Simple_repeat 1 45 0 6 840 3369 54 0 17 chr12 33474688 33475100 -87782430 - L1Md_F2 LINE L1 -1 6581 6177 6 840 544 229 21 21 chr12 33475822 33475965 -87781565 + MER2 DNA MER2_type 135 277 -68 6 840 320 182 0 0 chr12 33475962 33476017 -87781513 + PB1D10 SINE Alu 55 109 -8 6 840 235 245 0 54 chr12 33475967 33476023 -87781507 + ID_B1 SINE B4 170 222 -2 6 840 534 286 21 132 chr12 33476487 33476721 -87780809 + B3 SINE B2 1 208 -8 6 840 656 253 95 28 chr12 33476733 33476912 -87780618 + B3 SINE B2 26 216 0 6 840 565 253 85 9 chr12 33479617 33479817 -87777713 + ORR1D1 LTR MaLR 102 374 0 6 840 22 0 0 0 chr12 33479965 33479987 -87777543 + AT_rich Low_complexity Low_complexity 1 22 0 6 840 191 103 26 0 chr12 33480247 33480286 -87777244 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 840 253 196 0 19 chr12 33480927 33480975 -87776555 + B4 SINE B4 1 48 -244 6 840 519 45 0 0 chr12 33480975 33481041 -87776489 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 840 296 252 50 115 chr12 33481504 33481643 -87775887 - LTR33 LTR ERVL -20 495 366 6 840 216 0 0 0 chr12 33483234 33483258 -87774272 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 6 840 293 0 0 26 chr12 33483404 33483442 -87774088 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 6 840 603 227 0 8 chr12 33483499 33483628 -87773902 + ORR1D1 LTR MaLR 1 128 -246 6 840 373 162 112 0 chr12 33483632 33483712 -87773818 + ORR1D1 LTR MaLR 278 366 -8 6 840 228 338 14 0 chr12 33483711 33483785 -87773745 - PB1D10 SINE Alu -37 80 6 6 840 548 211 35 17 chr12 33483884 33484000 -87773530 + B1F SINE Alu 22 139 -10 6 840 232 281 12 35 chr12 33484031 33484116 -87773414 + GA-rich Low_complexity Low_complexity 3 85 0 6 840 6134 246 75 18 chr12 33484216 33484229 -87773301 - Lx6 LINE L1 -3 7457 7445 6 840 197 65 0 31 chr12 33484229 33484261 -87773269 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6 840 6134 246 75 18 chr12 33484261 33485796 -87771734 - Lx6 LINE L1 -16 7444 5820 6 840 1532 196 4 15 chr12 33485793 33486063 -87771467 - Lx6 LINE L1 -232 5648 5382 6 840 3005 194 163 24 chr12 33486063 33486812 -87770718 + RMER19B LTR ERVK 1 853 -49 6 840 5500 112 39 51 chr12 33486812 33487731 -87769799 + Lx LINE L1 5741 6648 -6 6 840 10752 156 40 37 chr12 33487783 33488145 -87769385 - Lx6 LINE L1 -493 5387 5022 6 840 1233 62 7 0 chr12 33488145 33488289 -87769241 + B1_Mus1 SINE Alu 2 146 -2 6 840 441 0 0 0 chr12 33488289 33488338 -87769192 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 840 10752 156 40 37 chr12 33488338 33489131 -87768399 - Lx6 LINE L1 -859 5021 4288 6 840 2813 35 0 0 chr12 33489131 33489445 -87768085 - L1Md_T LINE L1 0 6582 6269 6 840 10752 156 40 37 chr12 33489445 33490365 -87767165 - Lx6 LINE L1 -1593 4287 3305 6 840 279 191 0 0 chr12 33490972 33491019 -87766511 + ID_B1 SINE B4 123 169 -55 6 840 295 404 51 10 chr12 33491779 33491974 -87765556 - L2b LINE L2 -194 3181 2979 6 840 701 280 27 0 chr12 33492033 33492183 -87765347 + RSINE1 SINE B4 2 155 -10 6 840 233 155 70 0 chr12 33493300 33493371 -87764159 + CT-rich Low_complexity Low_complexity 2 77 0 6 840 266 106 0 21 chr12 33493386 33493434 -87764096 + (CTTA)n Simple_repeat Simple_repeat 1 47 0 6 840 2072 180 20 53 chr12 33493493 33493717 -87763813 + ORR1B1 LTR MaLR 1 226 -168 6 840 3330 49 18 8 chr12 33493717 33494110 -87763420 - L1_Mus1 LINE L1 -1 6566 6170 6 840 2072 180 20 53 chr12 33494110 33494284 -87763246 + ORR1B1 LTR MaLR 227 386 -8 6 840 627 262 47 0 chr12 33494289 33494438 -87763092 - ID_B1 SINE B4 -67 157 2 6 840 647 172 79 45 chr12 33495306 33495483 -87762047 - RMER1A Other Other -27 1003 821 6 840 180 0 0 0 chr12 33495601 33495621 -87761909 + (ATTTG)n Simple_repeat Simple_repeat 2 21 0 6 840 326 274 116 0 chr12 33495844 33495939 -87761591 + ORR1E LTR MaLR 1 106 -253 6 840 1680 191 41 9 chr12 33495931 33496249 -87761281 + ORR1B2 LTR MaLR 40 367 0 6 840 307 207 4 21 chr12 33496252 33496339 -87761191 + ORR1B2-int LTR MaLR 275 359 -1011 6 840 3581 176 67 20 chr12 33496324 33496834 -87760696 + ORR1B2-int LTR MaLR 742 1290 -219 6 840 213 39 0 0 chr12 33496834 33496860 -87760670 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 840 3581 176 67 20 chr12 33496860 33497082 -87760448 + ORR1B2-int LTR MaLR 1291 1508 -1 6 840 1390 154 40 66 chr12 33497083 33497354 -87760176 + ORR1B2 LTR MaLR 1 264 -103 6 840 2999 66 5 20 chr12 33497354 33497714 -87759816 + MTA_Mm LTR MaLR 1 360 -36 6 840 3318 63 2 12 chr12 33497714 33498114 -87759416 - MTA_Mm LTR MaLR 0 396 1 6 840 2999 66 5 20 chr12 33498114 33498155 -87759375 + MTA_Mm LTR MaLR 361 396 0 6 840 674 71 111 0 chr12 33498155 33498254 -87759276 + ORR1B2 LTR MaLR 258 367 0 6 840 540 256 5 66 chr12 33498398 33498549 -87758981 + B1_Mur3 SINE Alu 4 136 -13 6 840 288 212 0 0 chr12 33498565 33498631 -87758899 + (TAAA)n Simple_repeat Simple_repeat 2 67 0 6 840 198 404 48 0 chr12 33498895 33498999 -87758531 - L2b LINE L2 -1 3374 3266 6 840 440 318 30 69 chr12 33499374 33499577 -87757953 + ORR1E LTR MaLR 1 195 -164 6 840 180 0 0 0 chr12 33499754 33499774 -87757756 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 840 509 44 0 14 chr12 33499775 33499844 -87757686 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 840 297 0 0 0 chr12 33499844 33499876 -87757654 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 840 1421 344 80 57 chr12 33500703 33501695 -87755835 + MTE-int LTR MaLR 118 1132 -448 1 840 252 256 11 32 chr12 33501824 33501917 -87755613 - L1MA7 LINE L1 -8 6283 6193 2 840 21 0 0 0 chr12 33501929 33501950 -87755580 + AT_rich Low_complexity Low_complexity 1 21 0 3 840 198 0 0 0 chr12 33502255 33502277 -87755253 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 840 559 282 82 42 chr12 33502555 33502876 -87754654 + MTE-int LTR MaLR 1155 1529 -51 1 840 316 342 73 108 chr12 33502876 33503217 -87754313 + ORR1E LTR MaLR 3 331 -28 5 840 2398 39 0 0 chr12 33503346 33503626 -87753904 - L1Md_F2 LINE L1 -137 6445 6166 6 840 217 51 25 25 chr12 33503951 33503991 -87753539 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 7 840 212 218 20 95 chr12 33505504 33505651 -87751879 + G-rich Low_complexity Low_complexity 4 139 0 8 840 21 0 0 0 chr12 33506174 33506195 -87751335 + GC_rich Low_complexity Low_complexity 1 21 0 9 840 225 0 0 0 chr12 33506466 33506491 -87751039 + (T)n Simple_repeat Simple_repeat 1 25 0 1 840 842 182 0 7 chr12 33506582 33506726 -87750804 - B1_Mm SINE Alu 0 147 5 1 840 383 248 42 58 chr12 33506979 33507099 -87750431 + B1_Mur2 SINE Alu 3 120 -29 1 840 292 250 16 0 chr12 33508690 33508754 -87748776 + ID_B1 SINE B4 156 220 -4 1 840 243 125 0 0 chr12 33508876 33508916 -87748614 + RSINE1 SINE B4 71 110 -55 1 840 1437 159 203 9 chr12 33509349 33509679 -87747851 - ORR1B1 LTR MaLR 0 394 1 1 840 455 214 273 0 chr12 33509950 33510104 -87747426 - B3 SINE B2 -20 196 1 1 840 237 279 88 0 chr12 33510388 33510456 -87747074 + L2 LINE L2 2447 2520 -899 1 840 499 244 38 8 chr12 33510478 33510610 -87746920 - B1F1 SINE Alu -11 138 3 1 840 186 221 78 44 chr12 33510612 33510702 -87746828 + L2 LINE L2 2517 2609 -810 1 840 459 0 0 0 chr12 33510838 33510889 -87746641 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 840 261 75 0 0 chr12 33510891 33510931 -87746599 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 2 840 299 309 0 12 chr12 33510984 33511066 -87746464 + ID4_ SINE ID 2 82 -1 2 840 22 0 0 0 chr12 33511770 33511792 -87745738 + AT_rich Low_complexity Low_complexity 1 22 0 2 840 679 165 95 74 chr12 33511947 33512137 -87745393 + B2_Mm2 SINE B2 1 194 -1 2 840 722 291 63 0 chr12 33512337 33512605 -87744925 - B4A SINE B4 -5 287 3 2 840 617 282 50 19 chr12 33513815 33513974 -87743556 - RSINE1 SINE B4 0 165 2 2 840 204 40 0 0 chr12 33514007 33514032 -87743498 + (CTG)n Simple_repeat Simple_repeat 2 26 0 2 840 964 280 21 14 chr12 33514249 33514535 -87742995 + B4A SINE B4 1 288 -4 2 840 258 32 0 0 chr12 33515357 33515388 -87742142 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 840 456 313 16 26 chr12 33515392 33515543 -87741987 - B1F SINE Alu 0 149 1 2 840 2764 226 99 21 chr12 33516455 33517313 -87740217 - RCHARR1 DNA MER1_type -4 970 46 3 840 284 165 75 16 chr12 33517569 33517654 -87739876 - PB1D7 SINE Alu 0 127 33 3 840 818 169 257 21 chr12 33518920 33519204 -87738326 - ORR1D1 LTR MaLR 0 374 24 3 840 205 171 0 0 chr12 33519671 33519712 -87737818 + A-rich Low_complexity Low_complexity 2 42 0 3 840 255 279 38 0 chr12 33520224 33520303 -87737227 - ID4_ SINE ID 0 83 2 3 840 223 260 0 151 chr12 33520317 33520403 -87737127 - PB1D10 SINE Alu -7 110 38 3 840 537 16 0 0 chr12 33520554 33520616 -87736914 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 840 1327 67 16 38 chr12 33520839 33521024 -87736506 + B2_Mm2 SINE B2 1 181 -14 3 840 1190 49 0 0 chr12 33521034 33521177 -87736353 - B1_Mus2 SINE Alu -3 144 2 3 840 25 31 0 0 chr12 33521177 33521209 -87736321 + AT_rich Low_complexity Low_complexity 1 32 0 3 840 233 284 0 107 chr12 33521585 33521660 -87735870 - ID4_ SINE ID -2 81 15 4 840 233 314 130 62 chr12 33522032 33522178 -87735352 + B4 SINE B4 68 223 -69 4 840 1257 40 0 0 chr12 33522307 33522455 -87735075 - B1_Mus1 SINE Alu 0 148 1 4 840 987 262 59 4 chr12 33523371 33523685 -87733845 - ORR1D2 LTR MaLR 0 359 1 4 840 252 252 0 0 chr12 33524188 33524250 -87733280 + ID4 SINE ID 27 88 -64 4 840 181 152 100 80 chr12 33526118 33526168 -87731362 - MIR SINE MIR -92 116 66 4 840 432 0 0 0 chr12 33526554 33526602 -87730928 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 840 349 198 611 58 chr12 33528059 33528230 -87729300 + MTE2a LTR MaLR 78 343 -36 4 840 543 263 105 33 chr12 33528578 33528759 -87728771 - MTD LTR MaLR -208 211 18 4 840 1641 223 135 41 chr12 33530322 33530789 -87726741 - RLTR18B LTR ERVK -1 511 1 4 840 320 317 79 31 chr12 33532178 33532305 -87725225 + RSINE1 SINE B4 1 133 -32 5 840 208 333 0 0 chr12 33532588 33532642 -87724888 + (CGTG)n Simple_repeat Simple_repeat 2 55 0 5 840 218 269 0 0 chr12 33532643 33532695 -87724835 - ID4_ SINE ID -31 52 1 5 840 364 265 9 29 chr12 33536765 33536870 -87720660 + MER58B DNA MER1_type 204 306 -35 5 840 249 283 80 62 chr12 33537246 33537359 -87720171 + B1F2 SINE Alu 5 119 -30 5 840 378 231 130 0 chr12 33537267 33537375 -87720155 + ID_B1 SINE B4 100 221 -3 5 840 191 36 36 0 chr12 33538444 33538472 -87719058 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 840 353 310 38 15 chr12 33538516 33538647 -87718883 + MER58A DNA MER1_type 3 136 -88 5 840 243 146 0 0 chr12 33541063 33541104 -87716426 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 840 4968 103 7 7 chr12 33542580 33543258 -87714272 - RLTR33 LTR ERVK 0 678 1 5 840 234 0 0 0 chr12 33543814 33543840 -87713690 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 840 882 185 0 7 chr12 33543840 33543979 -87713551 - B1_Mus2 SINE Alu -7 140 2 6 840 1931 132 37 23 chr12 33544073 33544421 -87713109 + ORR1B1 LTR MaLR 42 394 0 6 840 975 218 162 54 chr12 33544487 33544821 -87712709 + ORR1D1 LTR MaLR 5 374 0 6 840 423 38 0 0 chr12 33544822 33544875 -87712655 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 6 840 236 291 59 8 chr12 33545005 33545123 -87712407 - L1MC5 LINE L1 -519 7442 7319 6 840 1154 253 214 20 chr12 33545435 33545931 -87711599 + L1_Mur3 LINE L1 3582 4173 -1707 6 840 1052 264 134 9 chr12 33547051 33547380 -87710150 + ORR1D2 LTR MaLR 1 370 0 6 840 653 314 44 82 chr12 33548109 33548500 -87709030 + L1M2c LINE L1 1652 2032 -4817 6 840 494 209 259 25 chr12 33548500 33548662 -87708868 - B3 SINE B2 -16 200 1 6 840 653 314 44 82 chr12 33548662 33548748 -87708782 + L1M2c LINE L1 2033 2111 -4738 6 840 696 170 0 0 chr12 33548759 33548871 -87708659 + PB1D9 SINE Alu 2 113 -7 7 840 780 226 121 1 chr12 33548929 33549263 -87708267 - MTD LTR MaLR -14 405 1 7 840 409 287 72 38 chr12 33549291 33549562 -87707968 + L1M2c LINE L1 2166 2442 -4407 6 840 348 347 64 5 chr12 33549697 33549917 -87707613 + L1M2c LINE L1 2423 2655 -4194 6 840 12336 146 48 16 chr12 33550215 33552551 -87704979 + Lx4B LINE L1 1774 4184 -1693 7 840 5671 162 38 58 chr12 33552545 33552604 -87704926 + Lx4B LINE L1 4735 4786 -1091 7 840 1189 35 0 20 chr12 33552604 33552752 -87704778 + B1_Mm SINE Alu 3 147 0 7 1 5671 193 54 35 chr12 33552752 33554828 -87702702 + Lx4B LINE L1 4787 7033 -17 7 841 340 264 11 0 chr12 33554866 33554953 -87702577 + L1M2c LINE L1 2945 3032 -3813 6 841 380 179 116 0 chr12 33555280 33555375 -87702155 + PB1D7 SINE Alu 12 117 -3 7 841 2482 132 13 102 chr12 33556655 33557117 -87700413 - MTC LTR MaLR 0 421 1 7 841 439 294 235 27 chr12 33557761 33558055 -87699475 + MLT1C LTR MaLR 61 415 -52 7 841 788 50 0 0 chr12 33558045 33558144 -87699386 - BC1_Mm scRNA scRNA -53 99 1 7 841 207 0 0 0 chr12 33558224 33558247 -87699283 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 841 3500 48 0 14 chr12 33558546 33558988 -87698542 + L1Md_F2 LINE L1 6147 6582 0 7 841 294 98 0 0 chr12 33559211 33559252 -87698278 + B3 SINE B2 1 41 -175 8 841 2409 50 0 10 chr12 33559252 33559552 -87697978 + L1_Mus1 LINE L1 6270 6566 -1 8 841 811 148 82 25 chr12 33559570 33559729 -87697801 + B2_Mm2 SINE B2 27 194 -1 8 841 344 236 99 45 chr12 33559866 33559977 -87697553 - MT2A LTR ERVL -121 412 296 8 841 204 67 0 0 chr12 33560015 33560045 -87697485 + (CAG)n Simple_repeat Simple_repeat 1 30 0 8 841 1311 184 97 4 chr12 33560052 33560320 -87697210 - MTD LTR MaLR -95 324 32 8 841 6525 115 45 17 chr12 33560338 33561351 -87696179 - Lx LINE L1 -15 6639 5621 8 841 1104 75 7 7 chr12 33561644 33561792 -87695738 - B1_Mus1 SINE Alu 0 148 1 8 841 323 212 49 12 chr12 33562737 33562818 -87694712 - L1MB3 LINE L1 -49 6134 6051 8 841 297 167 0 0 chr12 33563998 33564052 -87693478 + CT-rich Low_complexity Low_complexity 3 56 0 8 841 1794 119 53 37 chr12 33564052 33564375 -87693155 - Lx LINE L1 0 6654 6327 9 841 331 221 78 0 chr12 33564376 33564453 -87693077 - ORR1E LTR MaLR -255 104 22 9 841 240 35 0 0 chr12 33564723 33564752 -87692778 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 841 371 209 41 57 chr12 33565158 33565280 -87692250 + PB1D7 SINE Alu 1 120 0 9 841 447 19 0 0 chr12 33565400 33565452 -87692078 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 841 3865 206 152 20 chr12 33565525 33566466 -87691064 - RMER1B Other Other 0 1066 2 9 841 318 353 41 55 chr12 33566575 33566637 -87690893 - HAL1b LINE L1 -255 1754 1698 9 841 1222 194 9 5 chr12 33566637 33566849 -87690681 + B3 SINE B2 2 214 -2 9 841 318 353 41 55 chr12 33566849 33567005 -87690525 - HAL1b LINE L1 -312 1697 1539 9 841 439 281 82 0 chr12 33567770 33567792 -87689738 + B1F SINE Alu 4 109 -40 9 841 510 243 0 0 chr12 33567792 33567899 -87689631 + ID_B1 SINE B4 112 218 -6 9 841 705 48 19 19 chr12 33567920 33568027 -87689503 + (TTCTC)n Simple_repeat Simple_repeat 4 110 0 1 841 327 25 0 0 chr12 33568053 33568093 -87689437 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 841 376 349 76 0 chr12 33568286 33568418 -87689112 - RSINE1 SINE B4 -21 144 3 1 841 294 29 0 0 chr12 33569164 33569199 -87688331 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 841 315 122 0 0 chr12 33569728 33569777 -87687753 + (ATGGTG)n Simple_repeat Simple_repeat 3 51 0 1 841 233 282 0 90 chr12 33569777 33569855 -87687675 - RSINE1 SINE B4 0 165 95 1 841 449 309 116 23 chr12 33570919 33571134 -87686396 + MIRb SINE MIR 23 257 -11 1 841 659 158 17 17 chr12 33571665 33571781 -87685749 + PB1D10 SINE Alu 1 116 -1 1 841 753 143 21 202 chr12 33571787 33572024 -87685506 + B2_Mm2 SINE B2 1 194 -1 1 841 5612 107 11 1 chr12 33572506 33573357 -87684173 - L1_Mur1 LINE L1 -2555 3331 2473 1 841 399 56 0 0 chr12 33573480 33573534 -87683996 + (TAG)n Simple_repeat Simple_repeat 2 55 0 1 841 460 296 94 69 chr12 33573538 33573944 -87683586 - MT2A LTR ERVL -13 520 69 1 841 888 196 27 11 chr12 33574061 33574247 -87683283 + MTD LTR MaLR 3 191 -228 1 841 704 304 10 68 chr12 33574312 33574619 -87682911 + B4A SINE B4 2 290 -2 1 841 444 322 82 10 chr12 33574840 33575047 -87682483 + MLT1F LTR MaLR 284 505 -43 1 841 282 301 77 10 chr12 33575079 33575183 -87682347 - MIR SINE MIR -44 218 108 1 841 517 210 19 0 chr12 33575190 33575347 -87682183 + GA-rich Low_complexity Low_complexity 4 163 0 1 841 1380 147 163 3 chr12 33576207 33576491 -87681039 + IAPEY3_LTR LTR ERVK 1 468 -7 1 841 305 297 36 0 chr12 33576542 33576612 -87680918 + B3A SINE B2 79 151 -47 1 841 429 20 0 0 chr12 33576612 33576662 -87680868 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 841 305 297 36 0 chr12 33576662 33576702 -87680828 + B3A SINE B2 152 192 -6 1 841 343 318 22 58 chr12 33576774 33576791 -87680739 + ID_B1 SINE B4 67 198 -26 1 841 553 283 0 0 chr12 33576791 33576911 -87680619 + B1F SINE Alu 1 120 -29 1 841 468 51 0 0 chr12 33577196 33577255 -87680275 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 1 841 267 276 114 0 chr12 33577294 33577399 -87680131 + B1F1 SINE Alu 28 144 -5 1 841 232 299 29 79 chr12 33577525 33577566 -87679964 + L1MEc LINE L1 1381 1419 -4981 1 841 3465 28 5 0 chr12 33577566 33577960 -87679570 + MTA_Mm LTR MaLR 1 396 0 1 841 232 299 29 79 chr12 33577960 33578158 -87679372 + L1MEc LINE L1 1420 1608 -4792 1 841 425 296 70 27 chr12 33578268 33578469 -87679061 - RSINE1 SINE B4 -99 193 1 1 841 762 197 21 21 chr12 33578641 33578786 -87678744 + B1_Mm SINE Alu 3 147 0 1 841 349 271 23 30 chr12 33578902 33579035 -87678495 + Lx2B LINE L1 6868 6999 -1 1 841 23 78 0 0 chr12 33579207 33579258 -87678272 + AT_rich Low_complexity Low_complexity 1 51 0 1 841 530 301 120 8 chr12 33579284 33579542 -87677988 + B4A SINE B4 2 288 -4 1 841 200 279 12 25 chr12 33579546 33579627 -87677903 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 841 323 210 12 0 chr12 33581330 33581411 -87676119 + Lx9 LINE L1 7563 7644 0 1 841 256 255 20 0 chr12 33581624 33581726 -87675804 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 1 841 459 0 0 0 chr12 33582793 33582844 -87674686 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 841 208 219 0 0 chr12 33583145 33583186 -87674344 + GA-rich Low_complexity Low_complexity 1 41 0 1 841 180 0 0 0 chr12 33583293 33583313 -87674217 + (A)n Simple_repeat Simple_repeat 1 20 0 1 841 1680 210 123 0 chr12 33583907 33584273 -87673257 - MTC LTR MaLR -8 413 3 1 841 433 291 22 29 chr12 33584500 33584638 -87672892 + B1F1 SINE Alu 10 146 -3 1 841 432 0 0 0 chr12 33585011 33585059 -87672471 + (CAA)n Simple_repeat Simple_repeat 1 48 0 1 841 335 272 11 21 chr12 33585442 33585536 -87671994 + MLT1A1 LTR MaLR 304 396 -12 1 841 204 125 0 0 chr12 33585789 33585821 -87671709 + (GGA)n Simple_repeat Simple_repeat 2 33 0 1 841 729 290 26 90 chr12 33585852 33586231 -87671299 - ORR1E LTR MaLR -4 355 1 1 841 566 40 26 0 chr12 33586615 33586691 -87670839 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 1 841 450 0 0 0 chr12 33586997 33587047 -87670483 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1 841 410 336 19 9 chr12 33587063 33587171 -87670359 + RSINE1 SINE B4 6 114 -51 1 841 3042 21 0 0 chr12 33587193 33587530 -87670000 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 841 4803 62 46 16 chr12 33587530 33588166 -87669364 + IAPEz-int LTR ERVK 8 662 -5819 1 841 460 66 0 32 chr12 33588166 33588229 -87669301 + IAPEz-int LTR ERVK 1359 1419 -5062 1 841 1833 111 4 8 chr12 33588218 33588481 -87669049 + IAPEz-int LTR ERVK 2236 2497 -5183 1 841 951 80 24 0 chr12 33588476 33588601 -87668929 + IAPEz-int LTR ERVK 4783 4910 -2770 1 841 21715 10 1 0 chr12 33588603 33590960 -87666570 + IAPEz-int LTR ERVK 4123 6481 0 1 841 3042 21 0 0 chr12 33590960 33591297 -87666233 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 841 198 0 0 0 chr12 33591297 33591319 -87666211 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 841 218 269 179 0 chr12 33591585 33591663 -87665867 - MIRc SINE MIR -135 133 42 1 841 249 83 0 0 chr12 33592790 33592826 -87664704 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 841 661 203 32 0 chr12 33592842 33592965 -87664565 - RSINE1 SINE B4 -35 130 4 1 841 842 271 34 5 chr12 33593152 33593360 -87664170 + B3 SINE B2 3 216 0 1 841 310 176 132 0 chr12 33593959 33594027 -87663503 + ID_B1 SINE B4 146 222 -2 1 841 522 281 0 17 chr12 33594057 33594173 -87663357 + PB1D10 SINE Alu 3 116 -1 1 841 185 171 122 0 chr12 33594773 33594814 -87662716 + L2b LINE L2 3323 3368 -7 1 841 301 300 227 0 chr12 33595264 33595374 -87662156 + RSINE1 SINE B4 2 136 -29 1 841 643 238 47 47 chr12 33595822 33595994 -87661536 - B3A SINE B2 -3 195 24 1 841 354 277 43 157 chr12 33595928 33596138 -87661392 + MT2B LTR ERVL 72 257 -344 1 841 627 164 31 47 chr12 33596058 33596186 -87661344 + B1_Mus2 SINE Alu 22 147 0 1 841 261 0 0 0 chr12 33596874 33596903 -87660627 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 841 238 302 33 44 chr12 33596942 33597032 -87660498 - MIR SINE MIR -171 91 3 1 841 251 128 0 0 chr12 33597237 33597276 -87660254 + PB1 SINE Alu 81 119 -8 1 841 507 174 17 40 chr12 33597356 33597530 -87660000 + GA-rich Low_complexity Low_complexity 3 172 0 1 841 1842 280 96 27 chr12 33597575 33598625 -87658905 + L1MA6 LINE L1 5163 6287 -13 1 841 210 128 85 0 chr12 33598625 33598672 -87658858 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 1 841 480 239 48 21 chr12 33598673 33598818 -87658712 + L1MA9 LINE L1 6163 6311 -1 1 841 377 278 104 0 chr12 33598853 33598968 -87658562 + PB1 SINE Alu 1 127 0 1 841 859 145 132 12 chr12 33598971 33599138 -87658392 - B2_Mm2 SINE B2 -8 187 1 1 841 321 247 0 69 chr12 33599144 33599231 -87658299 + ID4 SINE ID 2 82 -1 1 841 400 284 52 59 chr12 33599529 33599664 -87657866 + MER102b DNA MER1_type 1 134 -207 1 841 746 314 154 43 chr12 33599711 33600372 -87657158 - L1MEg LINE L1 -2579 3567 2825 1 841 266 180 0 16 chr12 33600575 33600637 -87656893 + CT-rich Low_complexity Low_complexity 4 64 0 1 841 1089 247 18 63 chr12 33600645 33600930 -87656600 - B4A SINE B4 -20 272 1 1 841 1016 211 33 9 chr12 33600996 33601206 -87656324 + B3 SINE B2 2 216 0 1 841 783 275 19 19 chr12 33601305 33601520 -87656010 - RLTR18B LTR ERVK -1 511 297 1 841 242 139 0 0 chr12 33601561 33601597 -87655933 - RLTR18B LTR ERVK -216 296 261 1 841 501 296 128 35 chr12 33601675 33601741 -87655789 - B3A SINE B2 0 195 127 1 841 411 73 0 0 chr12 33601741 33601796 -87655734 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 841 501 294 139 18 chr12 33601796 33601916 -87655614 - B3A SINE B2 -55 143 3 1 841 304 346 152 47 chr12 33602129 33602774 -87654756 - L1MEg LINE L1 -4757 1485 773 1 841 403 210 29 20 chr12 33602774 33602876 -87654654 - B1F SINE Alu -7 142 40 1 841 180 0 54 54 chr12 33602881 33602918 -87654612 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1 841 595 163 154 0 chr12 33602922 33603045 -87654485 - B1_Mur4 SINE Alu 0 150 9 1 841 358 372 29 0 chr12 33603807 33603909 -87653621 + RSINE1 SINE B4 48 152 -13 1 841 458 180 10 0 chr12 33603916 33604016 -87653514 + CT-rich Low_complexity Low_complexity 1 101 0 1 841 24 0 0 0 chr12 33605048 33605072 -87652458 + AT_rich Low_complexity Low_complexity 1 24 0 1 841 219 184 0 50 chr12 33606371 33606451 -87651079 + GA-rich Low_complexity Low_complexity 1 76 0 1 841 334 299 5 38 chr12 33606507 33606691 -87650839 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 841 448 270 0 43 chr12 33606732 33606918 -87650612 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 841 345 266 0 41 chr12 33606944 33607089 -87650441 + (TG)n Simple_repeat Simple_repeat 2 140 0 1 841 355 299 78 63 chr12 33607092 33607329 -87650201 + ORR1E LTR MaLR 37 262 -112 1 841 227 266 24 48 chr12 33607366 33607449 -87650081 + ORR1E LTR MaLR 278 358 -21 1 841 549 284 107 11 chr12 33607467 33607645 -87649885 - MER58A DNA MER1_type -24 200 6 1 841 2175 136 22 79 chr12 33607881 33608297 -87649233 + ORR1B1 LTR MaLR 3 394 0 1 841 219 189 0 0 chr12 33608567 33608620 -87648910 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 841 687 264 61 45 chr12 33609430 33609628 -87647902 + B3 SINE B2 1 201 -15 1 841 696 243 40 0 chr12 33609662 33609814 -87647716 + B3A SINE B2 26 183 -15 1 841 294 306 104 100 chr12 33609827 33610096 -87647434 + MLT2B4 LTR ERVL 108 377 -179 1 841 286 256 144 0 chr12 33610455 33610590 -87646940 + MLT1A1 LTR MaLR 250 368 -40 1 841 208 323 62 31 chr12 33610592 33610688 -87646842 - L2a LINE L2 -24 3402 3304 1 841 479 280 127 15 chr12 33610719 33610853 -87646677 - B1F SINE Alu 0 149 1 1 841 1116 178 33 14 chr12 33612401 33612612 -87644918 + B3 SINE B2 2 216 0 1 841 261 229 68 84 chr12 33612777 33612893 -87644637 - PB1D10 SINE Alu -17 132 16 1 841 456 126 0 0 chr12 33612927 33613014 -87644516 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 841 264 30 0 0 chr12 33615083 33615116 -87642414 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 1 841 247 324 63 54 chr12 33615710 33615821 -87641709 - PB1D10 SINE Alu -5 112 1 2 841 30 59 0 0 chr12 33615914 33615965 -87641565 + AT_rich Low_complexity Low_complexity 1 51 0 2 841 1754 138 41 58 chr12 33616742 33617105 -87640425 - ORR1B2 LTR MaLR -8 359 3 2 841 2470 176 54 8 chr12 33617714 33618218 -87639312 - RLTR11A2 LTR ERVK 0 527 1 2 841 259 25 50 0 chr12 33618262 33618302 -87639228 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2 841 655 123 228 0 chr12 33618409 33618523 -87639007 - B1_Mur4 SINE Alu -6 144 5 2 841 701 209 20 0 chr12 33619825 33619973 -87637557 + B3A SINE B2 1 151 -47 2 841 244 274 0 16 chr12 33620239 33620302 -87637228 + GA-rich Low_complexity Low_complexity 4 65 0 2 841 236 342 0 0 chr12 33620308 33620381 -87637149 + (CATG)n Simple_repeat Simple_repeat 4 76 0 2 841 738 143 0 0 chr12 33620381 33620542 -87636988 + (TC)n Simple_repeat Simple_repeat 1 161 0 2 841 297 0 0 0 chr12 33620542 33620575 -87636955 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 841 437 298 63 68 chr12 33621179 33621384 -87636146 - B4A SINE B4 -18 274 71 2 841 324 280 67 11 chr12 33623002 33623140 -87634390 - L1ME3 LINE L1 -293 5869 5724 2 841 450 212 76 0 chr12 33623267 33623385 -87634145 - RLTR14 LTR ERV1 -251 131 5 2 841 532 200 29 0 chr12 33623426 33623531 -87633999 - B3 SINE B2 -107 109 2 2 841 459 0 0 0 chr12 33623943 33623994 -87633536 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 841 4923 156 24 10 chr12 33623999 33624804 -87632726 - Lx5 LINE L1 -3 7047 6232 2 841 285 425 57 4 chr12 33624809 33625038 -87632492 - MLT1K LTR MaLR -214 381 141 2 841 432 0 0 0 chr12 33625264 33625312 -87632218 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 841 297 0 0 0 chr12 33625312 33625345 -87632185 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 841 350 276 7 0 chr12 33625346 33625442 -87632088 + PB1D10 SINE Alu 1 98 -51 2 841 594 154 151 24 chr12 33626819 33626945 -87630585 + B1_Mur4 SINE Alu 2 143 -7 2 841 445 315 0 0 chr12 33627688 33627796 -87629734 + PB1D10 SINE Alu 2 109 -8 2 841 214 203 99 28 chr12 33627800 33627871 -87629659 + ID4 SINE ID 8 83 0 2 841 183 80 0 0 chr12 33628836 33628861 -87628669 + (A)n Simple_repeat Simple_repeat 1 25 0 2 841 979 214 73 46 chr12 33629612 33629915 -87627615 - RMER12 LTR ERVK -10 1312 1002 2 841 3648 154 69 19 chr12 33629925 33630674 -87626856 - RMER12 LTR ERVK -535 787 1 2 841 237 33 0 0 chr12 33630953 33630983 -87626547 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2 841 183 156 0 0 chr12 33631105 33631137 -87626393 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 841 313 350 10 0 chr12 33631149 33631246 -87626284 - RSINE1 SINE B4 -21 144 47 2 841 517 254 69 98 chr12 33631764 33631892 -87625638 + L1MD3 LINE L1 7729 7862 -133 2 841 424 240 67 0 chr12 33631892 33631996 -87625534 - PB1D10 SINE Alu -6 111 1 2 841 517 254 69 98 chr12 33631996 33632133 -87625397 + L1MD3 LINE L1 7863 7988 -7 2 841 1260 177 5 5 chr12 33632133 33632349 -87625181 + B3 SINE B2 1 216 0 2 841 1124 211 3 60 chr12 33632446 33632729 -87624801 - MTC LTR MaLR 0 421 155 2 841 620 214 0 23 chr12 33632765 33632894 -87624636 + B1_Mur2 SINE Alu 13 138 -11 2 841 5517 95 48 37 chr12 33632986 33634314 -87623216 - L1_Mus2 LINE L1 -1 6565 5215 2 841 227 292 31 0 chr12 33634317 33634382 -87623148 - MTC LTR MaLR -350 71 5 2 841 516 278 13 71 chr12 33634886 33635041 -87622489 + B3 SINE B2 2 147 -69 2 841 363 23 0 0 chr12 33635552 33635596 -87621934 + (CCA)n Simple_repeat Simple_repeat 2 45 0 2 841 568 140 10 39 chr12 33635603 33635707 -87621823 + PB1D9 SINE Alu 19 119 -1 2 841 254 202 16 248 chr12 33635715 33635840 -87621690 - PB1 SINE Alu -11 116 21 2 841 5835 43 0 0 chr12 33636216 33636907 -87620623 - L1Md_F2 LINE L1 -12 6570 5880 2 841 180 0 0 0 chr12 33637112 33637132 -87620398 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 841 231 211 7 107 chr12 33638973 33639122 -87618408 + (CCCCG)n Simple_repeat Simple_repeat 3 136 0 2 841 188 299 65 0 chr12 33640420 33640497 -87617033 - L2a LINE L2 -4 3422 3341 2 841 501 275 268 20 chr12 33641572 33641688 -87615842 - Charlie1a DNA MER1_type -1026 429 285 2 841 950 169 0 0 chr12 33641688 33641836 -87615694 - B1_Mus1 SINE Alu 0 148 1 2 841 501 265 188 21 chr12 33641836 33642061 -87615469 - Charlie1a DNA MER1_type -1171 284 20 2 841 860 202 141 44 chr12 33642183 33642431 -87615099 + B4A SINE B4 1 272 -20 2 841 373 256 22 0 chr12 33642761 33642851 -87614679 - RSINE1 SINE B4 -44 121 30 2 841 587 294 7 0 chr12 33643662 33643798 -87613732 - ID_B1 SINE B4 -7 217 81 2 841 705 252 13 13 chr12 33644721 33644870 -87612660 - B1_Mur1 SINE Alu 0 149 1 2 841 345 271 65 0 chr12 33645592 33645699 -87611831 - PB1D10 SINE Alu -3 114 1 2 841 606 271 36 6 chr12 33645699 33645779 -87611751 - ID SINE ID -139 85 1 2 841 226 336 39 0 chr12 33645789 33645893 -87611637 - MER33 DNA MER1_type -197 127 20 2 841 802 214 56 20 chr12 33646322 33646518 -87611012 + B3 SINE B2 1 203 -13 2 841 551 231 154 26 chr12 33646990 33647185 -87610345 - MLT1F1 LTR MaLR -2 678 386 2 841 215 212 88 29 chr12 33647229 33647297 -87610233 + ID4 SINE ID 1 72 -11 2 841 446 211 133 9 chr12 33647327 33647432 -87610098 + PB1D7 SINE Alu 2 119 -1 2 841 590 283 75 5 chr12 33647545 33647744 -87609786 - ID_B1 SINE B4 -1 223 11 2 841 23 33 0 0 chr12 33647991 33648021 -87609509 + AT_rich Low_complexity Low_complexity 1 30 0 2 841 468 163 44 80 chr12 33649882 33649995 -87607535 - B1_Mur1 SINE Alu 0 149 41 2 841 251 206 0 87 chr12 33649942 33650011 -87607519 - 4.5SRNA scRNA scRNA -6 88 26 2 841 207 224 0 29 chr12 33650171 33650240 -87607290 + T-rich Low_complexity Low_complexity 3 69 0 2 841 235 324 41 134 chr12 33650941 33650969 -87606561 + B4A SINE B4 74 225 -64 2 841 609 150 64 50 chr12 33650969 33651109 -87606421 + B1_Mur2 SINE Alu 7 148 -1 2 841 419 202 101 0 chr12 33651495 33651574 -87605956 - PB1D9 SINE Alu -16 104 18 2 841 928 214 59 5 chr12 33651742 33651944 -87605586 + B3 SINE B2 1 213 -3 2 841 41 21 0 0 chr12 33652206 33652254 -87605276 + AT_rich Low_complexity Low_complexity 1 48 0 2 841 24 53 0 0 chr12 33653707 33653745 -87603785 + AT_rich Low_complexity Low_complexity 1 38 0 2 841 23 33 0 0 chr12 33653807 33653837 -87603693 + AT_rich Low_complexity Low_complexity 1 30 0 2 841 543 193 66 46 chr12 33654022 33654174 -87603356 - ID_B1 SINE B4 0 224 70 2 841 649 204 146 23 chr12 33654198 33654369 -87603161 + B3A SINE B2 1 192 -6 2 841 27 29 0 0 chr12 33654369 33654403 -87603127 + AT_rich Low_complexity Low_complexity 1 34 0 2 841 843 225 148 16 chr12 33654914 33655158 -87602372 + B4A SINE B4 2 277 -15 2 841 678 259 6 36 chr12 33655606 33655774 -87601756 - RSINE1 SINE B4 0 165 3 2 841 3135 230 106 34 chr12 33656272 33657451 -87600079 - Lx9 LINE L1 -157 7487 6197 2 841 858 267 11 0 chr12 33657568 33657755 -87599775 - B3 SINE B2 -27 189 1 2 841 653 221 57 0 chr12 33658066 33658206 -87599324 + B1_Mur1 SINE Alu 2 149 0 2 841 244 338 60 72 chr12 33658076 33658242 -87599288 + B4A SINE B4 97 260 -32 2 841 673 261 109 16 chr12 33658335 33658592 -87598938 + B4A SINE B4 2 282 -10 2 841 21 36 0 0 chr12 33658642 33658670 -87598860 + AT_rich Low_complexity Low_complexity 1 28 0 2 841 388 234 199 43 chr12 33662042 33662203 -87595327 + ID_B1 SINE B4 14 199 -25 2 841 230 233 0 77 chr12 33662149 33662214 -87595316 + B1F SINE Alu 68 127 -22 2 841 306 0 0 0 chr12 33662230 33662264 -87595266 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 841 213 226 0 36 chr12 33662277 33662332 -87595198 + CT-rich Low_complexity Low_complexity 3 55 0 2 841 692 195 202 22 chr12 33662442 33662620 -87594910 + B3 SINE B2 2 211 -5 2 841 493 291 65 46 chr12 33663665 33664036 -87593494 - L1M5 LINE L1 -1458 4688 4306 2 841 1203 41 7 0 chr12 33664415 33664561 -87592969 + B1_Mm SINE Alu 1 147 0 2 841 1007 87 29 14 chr12 33664590 33664730 -87592800 + B1_Mus1 SINE Alu 1 142 -6 2 841 356 230 45 107 chr12 33665139 33665251 -87592279 + PB1D10 SINE Alu 16 120 0 2 841 602 234 0 68 chr12 33665263 33665379 -87592151 + B1_Mur1 SINE Alu 13 124 -25 2 841 2279 152 66 5 chr12 33665379 33665775 -87591755 + MTC LTR MaLR 1 420 -1 2 841 602 234 0 68 chr12 33665775 33665805 -87591725 + B1_Mur1 SINE Alu 125 149 0 2 841 343 276 35 0 chr12 33665838 33665925 -87591605 + ID_B1 SINE B4 80 169 -55 2 841 211 147 0 0 chr12 33665962 33665996 -87591534 + B3 SINE B2 2 35 -181 2 841 371 145 0 0 chr12 33666429 33666491 -87591039 + MTD LTR MaLR 347 408 -11 2 841 368 358 136 35 chr12 33667290 33667753 -87589777 - L2 LINE L2 -1334 2085 1576 2 841 630 0 0 0 chr12 33667762 33667832 -87589698 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 841 1924 123 60 3 chr12 33667902 33668204 -87589326 - ORR1A2 LTR MaLR -8 319 1 2 841 375 314 124 0 chr12 33668204 33668336 -87589194 - B4A SINE B4 -99 193 45 2 841 219 330 68 58 chr12 33668513 33668535 -87588995 + B4A SINE B4 71 93 -199 2 841 306 306 65 0 chr12 33668535 33668643 -87588887 + PB1D10 SINE Alu 2 116 -1 2 841 386 354 94 0 chr12 33668687 33668879 -87588651 + L1MD LINE L1 4114 4323 -1823 2 841 1797 142 137 57 chr12 33669780 33670130 -87587400 - ORR1C1 LTR MaLR 0 378 1 3 841 227 311 19 10 chr12 33670348 33670452 -87587078 + L1_Mur3 LINE L1 2424 2528 -3352 3 841 810 242 91 0 chr12 33670505 33670691 -87586839 + B3 SINE B2 9 211 -5 3 841 3504 291 108 25 chr12 33670712 33672498 -87585032 + L1M2 LINE L1 3140 5094 -1049 3 841 1156 62 0 14 chr12 33672498 33672645 -87584885 - B1_Mm SINE Alu -2 145 1 3 841 3504 291 108 25 chr12 33672645 33672801 -87584729 + L1M2 LINE L1 5095 5242 -901 3 841 3191 272 38 11 chr12 33672883 33673730 -87583800 + Lx8 LINE L1 6257 7126 -347 3 841 294 193 36 12 chr12 33673926 33674010 -87583520 - MLT2E LTR ERVL -8 555 470 3 841 1702 164 48 94 chr12 33674018 33674068 -87583462 + ORR1B1 LTR MaLR 41 88 -306 3 841 477 0 0 0 chr12 33674068 33674121 -87583409 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 841 1702 164 48 94 chr12 33674121 33674441 -87583089 + ORR1B1 LTR MaLR 89 393 -1 3 841 229 288 0 0 chr12 33674975 33675048 -87582482 - L2a LINE L2 -418 3008 2936 3 841 370 325 16 31 chr12 33675594 33675721 -87581809 - B4 SINE B4 -163 129 5 3 841 1901 128 100 3 chr12 33675722 33676042 -87581488 - ORR1B2 LTR MaLR 0 367 17 3 841 1151 107 0 6 chr12 33676866 33677045 -87580485 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 841 327 25 0 0 chr12 33678103 33678143 -87579387 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 841 282 56 0 0 chr12 33678346 33678382 -87579148 + (TTC)n Simple_repeat Simple_repeat 2 37 0 3 841 966 140 6 11 chr12 33678383 33678564 -87578966 + CT-rich Low_complexity Low_complexity 1 180 0 3 841 577 149 9 9 chr12 33680817 33680932 -87576598 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 3 841 487 301 0 22 chr12 33680940 33681076 -87576454 - B1_Mur1 SINE Alu -1 148 16 3 841 296 220 88 0 chr12 33681186 33681277 -87576253 + LTR40b LTR ERVL 355 453 -9 3 841 491 298 23 8 chr12 33681847 33681979 -87575551 + RSINE1 SINE B4 3 136 -29 3 841 243 302 131 36 chr12 33681979 33682015 -87575515 + B2_Mm2 SINE B2 2 185 -10 3 841 181 231 24 16 chr12 33682031 33682154 -87575376 + (TA)n Simple_repeat Simple_repeat 1 124 0 3 841 3137 44 10 0 chr12 33682185 33682572 -87574958 - MTA_Mm LTR MaLR 0 396 6 3 841 1196 96 6 0 chr12 33682903 33683080 -87574450 + (TTC)n Simple_repeat Simple_repeat 2 179 0 3 841 611 138 0 0 chr12 33683115 33683202 -87574328 - PB1D9 SINE Alu -27 93 7 3 841 361 270 11 33 chr12 33683124 33683216 -87574314 - B4 SINE B4 -123 169 80 3 841 646 247 133 52 chr12 33683282 33683666 -87573864 - L1ME3 LINE L1 -74 6088 5674 3 841 441 0 0 0 chr12 33683730 33683779 -87573751 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 841 274 322 44 33 chr12 33683895 33683985 -87573545 - B4A SINE B4 -146 146 56 3 841 26 0 0 0 chr12 33684061 33684087 -87573443 + AT_rich Low_complexity Low_complexity 1 26 0 3 841 279 0 0 0 chr12 33684105 33684136 -87573394 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 841 401 271 159 32 chr12 33684147 33684273 -87573257 - RSINE1 SINE B4 -21 144 3 3 841 708 74 9 36 chr12 33684504 33684616 -87572914 - B1_Mur4 SINE Alu -1 149 41 3 841 612 195 0 0 chr12 33684619 33684783 -87572747 + CT-rich Low_complexity Low_complexity 2 165 0 3 841 351 200 233 0 chr12 33684961 33685051 -87572479 - PB1D7 SINE Alu -9 111 1 3 841 369 214 0 0 chr12 33685113 33685183 -87572347 - B1_Mur2 SINE Alu -12 137 68 3 842 262 367 116 15 chr12 33685534 33685733 -87571797 - MIRb SINE MIR -8 260 42 3 842 417 284 9 0 chr12 33686030 33686146 -87571384 + PB1D10 SINE Alu 1 117 0 3 842 204 235 0 0 chr12 33687003 33687054 -87570476 + A-rich Low_complexity Low_complexity 1 51 0 3 842 208 364 84 28 chr12 33688286 33688464 -87569066 + MIRb SINE MIR 25 212 -56 3 842 342 0 0 0 chr12 33688949 33688987 -87568543 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 842 313 347 0 21 chr12 33688990 33689087 -87568443 - RSINE1 SINE B4 -62 103 9 3 842 243 335 48 0 chr12 33689330 33689422 -87568108 - MIRc SINE MIR -98 170 69 3 842 716 118 117 36 chr12 33689984 33690137 -87567393 - ORR1C2 LTR MaLR -207 171 17 3 842 1312 81 17 0 chr12 33690275 33690448 -87567082 + B2_Mm2 SINE B2 3 178 -17 3 842 185 339 0 0 chr12 33690723 33690788 -87566742 + L2a LINE L2 3339 3403 -23 3 842 396 0 0 0 chr12 33691509 33691553 -87565977 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 842 414 0 0 0 chr12 33691643 33691689 -87565841 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 842 772 181 34 14 chr12 33692117 33692263 -87565267 - B1_Mur1 SINE Alu 0 149 1 3 842 579 281 57 73 chr12 33692295 33692487 -87565043 + B3A SINE B2 9 197 -1 3 842 407 344 104 0 chr12 33692512 33692695 -87564835 + Lx8 LINE L1 6991 7192 -281 3 842 203 161 0 18 chr12 33692769 33692826 -87564704 + CT-rich Low_complexity Low_complexity 1 56 0 3 842 24 32 0 0 chr12 33695286 33695317 -87562213 + AT_rich Low_complexity Low_complexity 1 31 0 3 842 2487 227 63 0 chr12 33695319 33695825 -87561705 - Lx5 LINE L1 -7 7043 6506 3 842 2706 94 5 3 chr12 33695828 33696200 -87561330 + MTB LTR MaLR 28 400 0 3 842 6391 163 47 22 chr12 33696202 33697888 -87559642 - Lx5 LINE L1 -614 6436 4714 3 842 3776 149 42 38 chr12 33697870 33698605 -87558925 - Lx5 LINE L1 -2774 3103 2366 3 842 2038 158 19 3 chr12 33698604 33698972 -87558558 - Lx5 LINE L1 -3966 1914 1541 3 842 366 219 25 8 chr12 33700399 33700519 -87557011 + CT-rich Low_complexity Low_complexity 1 122 0 3 842 227 333 0 12 chr12 33700535 33700617 -87556913 + CT-rich Low_complexity Low_complexity 1 81 0 3 842 576 152 0 0 chr12 33701205 33701323 -87556207 + (TG)n Simple_repeat Simple_repeat 1 118 0 3 842 938 217 19 56 chr12 33701323 33701538 -87555992 - B3 SINE B2 -8 208 2 3 842 385 300 182 15 chr12 33701825 33702028 -87555502 - MER58B DNA MER1_type -46 295 59 3 842 231 36 0 0 chr12 33702028 33702056 -87555474 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 3 842 198 0 0 0 chr12 33702238 33702260 -87555270 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 842 635 216 246 0 chr12 33702640 33702807 -87554723 - B3 SINE B2 -4 212 5 3 842 405 0 0 0 chr12 33704658 33704703 -87552827 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 842 2361 155 19 19 chr12 33705444 33705865 -87551665 + MTC LTR MaLR 1 421 0 3 842 288 53 0 0 chr12 33706765 33706803 -87550727 + (CCCTA)n Simple_repeat Simple_repeat 3 40 0 3 842 719 269 44 61 chr12 33706897 33707190 -87550340 + B4 SINE B4 5 292 0 3 842 414 196 0 0 chr12 33707192 33707294 -87550236 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 842 279 0 0 0 chr12 33707339 33707370 -87550160 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 842 768 213 57 0 chr12 33707376 33707517 -87550013 - B3 SINE B2 -67 149 1 3 842 421 325 119 37 chr12 33709033 33709410 -87548120 - MLT1A1 LTR MaLR 0 408 1 3 842 245 347 0 0 chr12 33710096 33710168 -87547362 + (CATG)n Simple_repeat Simple_repeat 3 74 0 3 842 242 284 74 0 chr12 33710537 33710618 -87546912 - MLT1N2 LTR MaLR -388 174 88 3 842 313 349 29 123 chr12 33710636 33710946 -87546584 - ORR1E LTR MaLR 0 359 79 3 842 290 125 268 0 chr12 33712617 33712673 -87544857 - URR1B DNA MER1_type 0 225 155 3 842 1610 224 122 37 chr12 33713472 33713930 -87543600 + RMER1B Other Other 24 520 -546 3 842 1208 293 126 11 chr12 33714429 33714991 -87542539 + L1MB7 LINE L1 5558 6184 0 3 842 264 323 163 51 chr12 33715830 33716124 -87541406 + L2a LINE L2 2625 2951 -468 3 842 276 271 128 93 chr12 33716172 33716461 -87541069 + L2a LINE L2 3041 3339 -87 3 842 239 219 365 0 chr12 33716500 33716599 -87540931 - MER89 LTR ERV1 -157 402 268 3 842 296 296 124 44 chr12 33716660 33716773 -87540757 - MER89 LTR ERV1 -424 135 14 3 842 235 290 43 86 chr12 33716776 33716893 -87540637 + L2a LINE L2 3293 3404 -22 3 842 375 127 0 0 chr12 33717587 33717650 -87539880 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 842 298 273 2 15 chr12 33718685 33718809 -87538721 + L1ME2z LINE L1 5426 5544 -2451 3 842 342 211 66 0 chr12 33718936 33719012 -87538518 + L1ME2z LINE L1 5915 5995 -449 3 842 1018 105 121 17 chr12 33719188 33719362 -87538168 - B2_Mm2 SINE B2 -2 193 2 3 842 22 0 0 0 chr12 33721553 33721575 -87535955 + AT_rich Low_complexity Low_complexity 1 22 0 3 842 240 35 0 0 chr12 33721575 33721604 -87535926 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 842 333 0 0 0 chr12 33721602 33721639 -87535891 + (A)n Simple_repeat Simple_repeat 1 37 0 3 842 184 344 159 16 chr12 33721750 33721995 -87535535 - L2c LINE L2 -19 3368 3089 3 842 1772 162 72 61 chr12 33722846 33723207 -87534323 + ORR1D1 LTR MaLR 2 366 -8 3 842 958 181 79 20 chr12 33724126 33724329 -87533201 + B3 SINE B2 2 216 0 3 842 181 376 48 19 chr12 33726446 33726549 -87530981 - MIR SINE MIR -67 141 36 3 842 195 42 0 0 chr12 33727172 33727196 -87530334 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 3 842 427 322 6 92 chr12 33728041 33728205 -87529325 + RSINE1 SINE B4 16 165 0 3 842 247 286 0 0 chr12 33728205 33728261 -87529269 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 3 842 310 170 0 19 chr12 33728261 33728315 -87529215 + HAL1-3A_ME LINE L1 1975 2027 -831 3 842 535 257 204 11 chr12 33728362 33728543 -87528987 + B3 SINE B2 1 216 0 3 842 441 0 0 0 chr12 33728934 33728983 -87528547 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 842 788 156 55 0 chr12 33728985 33729113 -87528417 - B1_Mus1 SINE Alu -13 135 1 3 842 248 231 0 58 chr12 33729209 33729278 -87528252 + G-rich Low_complexity Low_complexity 5 69 0 3 842 652 213 8 16 chr12 33729517 33729641 -87527889 - B1_Mur4 SINE Alu -21 129 7 3 842 293 277 27 98 chr12 33729543 33729655 -87527875 - MT2B LTR ERVL -344 257 154 3 842 312 221 0 0 chr12 33730522 33730599 -87526931 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 842 22 35 0 0 chr12 33731202 33731231 -87526299 + AT_rich Low_complexity Low_complexity 1 29 0 4 842 584 280 0 47 chr12 33731704 33731854 -87525676 - RSINE1 SINE B4 -20 145 3 4 842 311 341 89 31 chr12 33731862 33732086 -87525444 - MIRb SINE MIR -6 262 26 4 842 309 351 73 58 chr12 33733088 33733348 -87524182 + ORR1E LTR MaLR 47 310 -49 4 842 1076 189 73 15 chr12 33734247 33734451 -87523079 + B3 SINE B2 1 216 0 4 842 207 146 0 0 chr12 33735034 33735075 -87522455 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 4 842 591 15 0 0 chr12 33735125 33735193 -87522337 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 4 842 718 228 0 0 chr12 33735230 33735353 -87522177 - ID_B1 SINE B4 -15 209 87 4 842 182 192 19 0 chr12 33735736 33735788 -87521742 + GA-rich Low_complexity Low_complexity 2 54 0 4 842 310 107 146 0 chr12 33736249 33736352 -87521178 + (GGATG)n Simple_repeat Simple_repeat 4 121 0 4 842 319 326 14 50 chr12 33737342 33737481 -87520049 + L1ME4a LINE L1 5881 6014 -110 4 842 325 308 127 36 chr12 33738548 33738878 -87518652 + L2a LINE L2 2723 3082 -337 4 842 274 311 94 47 chr12 33738925 33739053 -87518477 + ORR1E LTR MaLR 51 184 -175 4 842 383 238 89 37 chr12 33739324 33739459 -87518071 + L2a LINE L2 3219 3360 -66 4 842 1226 277 115 11 chr12 33739961 33740395 -87517135 - RMER5 LTR ERV1 0 534 56 4 842 680 153 15 0 chr12 33740436 33740567 -87516963 + CT-rich Low_complexity Low_complexity 3 135 0 4 842 262 325 40 36 chr12 33740744 33740940 -87516590 - MLT1G3 LTR MaLR -8 587 385 4 842 228 269 197 15 chr12 33741703 33741835 -87515695 + RLTR14 LTR ERV1 225 380 -2 4 842 461 17 17 0 chr12 33741946 33742004 -87515526 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 842 488 76 0 0 chr12 33743490 33743556 -87513974 + MERVK26-int LTR ERVK 5253 5318 -1601 4 842 584 215 0 9 chr12 33744444 33744552 -87512978 + B3 SINE B2 110 216 0 4 842 461 154 66 0 chr12 33745678 33745814 -87511716 + CT-rich Low_complexity Low_complexity 4 148 0 4 842 320 203 0 59 chr12 33745898 33745966 -87511564 + tRNA-Ala-GCY_ tRNA tRNA 4 67 -8 4 842 368 197 0 0 chr12 33745907 33745968 -87511562 + ID4_ SINE ID 15 75 -8 4 842 396 0 0 0 chr12 33745970 33746014 -87511516 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 842 750 188 98 0 chr12 33746016 33746149 -87511381 + B1_Mus1 SINE Alu 3 148 0 4 842 180 0 0 0 chr12 33746150 33746170 -87511360 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 842 266 73 0 24 chr12 33747142 33747184 -87510346 + (CCCCCT)n Simple_repeat Simple_repeat 1 41 0 4 842 1046 135 0 6 chr12 33747197 33747376 -87510154 + (TTC)n Simple_repeat Simple_repeat 1 178 0 4 842 1376 226 50 36 chr12 33748166 33748529 -87509001 + ORR1D2 LTR MaLR 3 370 0 4 842 236 355 13 0 chr12 33748558 33748634 -87508896 + MER5A DNA MER1_type 4 80 -109 4 842 363 241 86 35 chr12 33748797 33748913 -87508617 + MER20 DNA MER1_type 54 175 -44 4 842 195 189 0 0 chr12 33749134 33749187 -87508343 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 4 842 547 281 111 35 chr12 33750615 33750814 -87506716 - B4 SINE B4 0 292 79 4 842 1216 43 0 0 chr12 33750869 33751009 -87506521 - B1_Mm SINE Alu -7 140 1 4 842 251 261 169 54 chr12 33751011 33751038 -87506492 - B2_Mm2 SINE B2 -9 186 158 4 842 465 0 30 15 chr12 33751038 33751104 -87506426 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 842 513 32 0 0 chr12 33751104 33751166 -87506364 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 842 582 261 44 22 chr12 33751166 33751303 -87506227 - B3A SINE B2 -57 141 2 4 842 298 272 12 0 chr12 33752493 33752574 -87504956 - ID4 SINE ID -1 82 1 4 842 1045 144 102 0 chr12 33753944 33754215 -87503315 + RMER4B LTR ERVK 252 585 0 4 842 220 282 42 14 chr12 33755569 33755641 -87501889 + MIR SINE MIR 29 102 -160 4 842 2064 137 72 53 chr12 33755682 33756059 -87501471 - ORR1C2 LTR MaLR 0 384 1 4 842 263 265 59 0 chr12 33756145 33756213 -87501317 + tRNA-Ala-GCA tRNA tRNA 4 75 0 4 842 508 100 0 52 chr12 33756736 33756852 -87500678 + (TATG)n Simple_repeat Simple_repeat 2 111 0 4 842 3034 145 4 30 chr12 33757651 33758177 -87499353 + RLTR28 LTR ERVL 3 514 -10 4 842 477 222 531 0 chr12 33758561 33758706 -87498824 - ID_B1 SINE B4 -2 222 1 4 842 262 331 55 37 chr12 33759743 33759906 -87497624 + MER33 DNA MER1_type 32 197 -127 4 842 363 23 0 0 chr12 33760013 33760057 -87497473 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 842 225 206 103 0 chr12 33760334 33760402 -87497128 + MER33 DNA MER1_type 225 299 -25 4 842 1033 202 196 11 chr12 33761646 33761927 -87495603 + ORR1D2 LTR MaLR 2 335 -35 4 842 617 224 41 77 chr12 33761927 33762121 -87495409 - RLTR23 LTR ERV1 0 430 244 4 842 378 0 0 0 chr12 33762607 33762649 -87494881 + (TTTTA)n Simple_repeat Simple_repeat 5 46 0 4 842 195 100 0 0 chr12 33762671 33762701 -87494829 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 842 848 105 63 6 chr12 33762760 33762902 -87494628 - B1_Mus1 SINE Alu -4 144 1 4 842 244 135 0 0 chr12 33762902 33762938 -87494592 + ORR1D2 LTR MaLR 328 363 -7 4 842 286 348 76 28 chr12 33763025 33763170 -87494360 + LTR48B LTR ERV1 11 162 -482 4 842 491 269 95 75 chr12 33763346 33763599 -87493931 + B4A SINE B4 14 271 -21 4 842 2644 126 211 0 chr12 33763688 33764163 -87493367 + RMER15 LTR ERVL 1 575 0 4 842 186 43 0 0 chr12 33764246 33764269 -87493261 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 4 842 199 256 205 0 chr12 33765929 33766007 -87491523 - MIRb SINE MIR -120 148 55 4 842 341 335 31 67 chr12 33766014 33766238 -87491292 - L2 LINE L2 -883 2536 2321 4 842 494 323 6 66 chr12 33766372 33766538 -87490992 - RSINE1 SINE B4 -1 164 9 4 842 549 0 0 0 chr12 33766538 33766599 -87490931 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 4 842 265 223 0 226 chr12 33767895 33768028 -87489502 + MLT1A1 LTR MaLR 302 404 -4 4 842 552 143 0 0 chr12 33768029 33768127 -87489403 + (TCTCC)n Simple_repeat Simple_repeat 3 100 0 4 842 316 230 0 0 chr12 33768134 33768221 -87489309 + CT-rich Low_complexity Low_complexity 2 88 0 4 842 573 28 0 0 chr12 33768225 33768296 -87489234 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 842 367 323 0 0 chr12 33768915 33769014 -87488516 + MIR SINE MIR 98 196 -66 4 842 329 0 0 24 chr12 33769445 33769487 -87488043 + (GGGGA)n Simple_repeat Simple_repeat 3 43 0 4 842 343 351 27 26 chr12 33769907 33770070 -87487460 + MIR SINE MIR 17 183 -85 4 842 187 200 0 24 chr12 33771611 33771652 -87485878 - MIRc SINE MIR -117 151 112 4 842 245 289 22 6 chr12 33772237 33772317 -87485213 + B1F SINE Alu 68 148 -1 4 842 239 319 14 0 chr12 33772323 33772395 -87485135 + ID4_ SINE ID 5 77 -6 4 842 221 0 0 33 chr12 33772970 33773000 -87484530 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 842 249 340 88 19 chr12 33774292 33774451 -87483079 - MLT1A1 LTR MaLR 0 408 239 4 842 550 215 0 0 chr12 33774476 33774569 -87482961 - B1F SINE Alu -3 146 54 4 842 273 211 19 0 chr12 33774908 33774960 -87482570 + B4A SINE B4 3 55 -237 4 842 22 0 0 0 chr12 33776302 33776324 -87481206 + AT_rich Low_complexity Low_complexity 1 22 0 4 842 1134 276 53 22 chr12 33778204 33778564 -87478966 - MTEa LTR MaLR -4 375 5 4 842 421 232 141 0 chr12 33779380 33779479 -87478051 + B1F SINE Alu 16 128 -21 4 842 279 54 0 0 chr12 33779788 33779825 -87477705 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 842 320 342 19 57 chr12 33779835 33779993 -87477537 + MIRb SINE MIR 87 238 -30 4 842 213 213 0 0 chr12 33781234 33781281 -87476249 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 842 240 149 375 11 chr12 33781282 33781352 -87476178 - B3 SINE B2 -6 210 109 4 842 594 121 0 0 chr12 33781352 33781435 -87476095 + B3 SINE B2 1 83 -133 4 842 225 0 0 0 chr12 33781871 33781896 -87475634 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 842 1274 272 77 66 chr12 33781913 33782457 -87475073 - L1MB8 LINE L1 -20 6158 5609 4 842 318 98 0 0 chr12 33782772 33782823 -87474707 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 4 842 1043 112 0 11 chr12 33782846 33782974 -87474556 + (TCCA)n Simple_repeat Simple_repeat 3 130 0 4 842 387 0 0 0 chr12 33782974 33783017 -87474513 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 842 1043 112 0 11 chr12 33783017 33783068 -87474462 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 4 842 243 103 0 0 chr12 33783078 33783117 -87474413 + (CATG)n Simple_repeat Simple_repeat 2 40 0 4 842 586 296 47 132 chr12 33783214 33783600 -87473930 - ORR1E LTR MaLR 0 359 7 4 842 22 0 0 0 chr12 33783891 33783913 -87473617 + AT_rich Low_complexity Low_complexity 1 22 0 4 842 1732 196 82 34 chr12 33784098 33784478 -87473052 + MTD LTR MaLR 22 419 0 4 842 207 0 0 0 chr12 33784521 33784544 -87472986 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 842 252 337 53 11 chr12 33784614 33784803 -87472727 - L1M5 LINE L1 -340 5784 5588 4 842 1919 134 46 0 chr12 33784807 33785113 -87472417 - ORR1A2 LTR MaLR -7 320 1 4 842 245 29 29 0 chr12 33785218 33785252 -87472278 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 842 228 159 57 14 chr12 33785345 33785415 -87472115 + GA-rich Low_complexity Low_complexity 5 77 0 4 842 958 236 1 24 chr12 33785444 33785717 -87471813 + RMER19B LTR ERVK 262 664 -238 4 842 449 169 16 86 chr12 33785685 33785809 -87471721 + RMER19B LTR ERVK 666 744 -158 4 842 957 186 34 3 chr12 33785813 33786139 -87471391 + (TCTA)n Simple_repeat Simple_repeat 1 336 0 4 842 321 240 48 68 chr12 33786163 33786266 -87471264 - MLT1B LTR MaLR -286 104 4 5 842 390 308 166 59 chr12 33786279 33786586 -87470944 - ORR1E LTR MaLR -2 357 18 5 842 250 242 14 57 chr12 33786683 33786753 -87470777 - L1M5 LINE L1 -605 5569 5503 4 842 606 329 21 49 chr12 33788149 33788392 -87469138 - MIR SINE MIR 0 262 27 5 842 3410 15 35 0 chr12 33789860 33790257 -87467273 + IAPLTR2a LTR ERVK 1 411 0 5 842 408 40 0 0 chr12 33791147 33791197 -87466333 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 842 265 353 81 23 chr12 33791429 33791603 -87465927 + LTR16A LTR ERVL 172 355 -96 5 842 671 263 136 55 chr12 33791948 33792205 -87465325 - MLT1A0 LTR MaLR -87 278 1 5 842 645 103 26 0 chr12 33792452 33792569 -87464961 + (CA)n Simple_repeat Simple_repeat 2 121 0 5 842 216 298 212 8 chr12 33792597 33792729 -87464801 + L2a LINE L2 3215 3373 -53 5 842 1936 168 109 19 chr12 33793240 33793617 -87463913 + MTC LTR MaLR 1 411 -10 5 842 662 242 35 65 chr12 33793817 33794016 -87463514 - B3A SINE B2 0 198 6 5 842 239 252 19 19 chr12 33794142 33794296 -87463234 + (ATGGTG)n Simple_repeat Simple_repeat 5 158 0 5 842 190 146 91 0 chr12 33794318 33794373 -87463157 + (ATGGTG)n Simple_repeat Simple_repeat 1 60 0 5 842 521 324 23 0 chr12 33796098 33796274 -87461256 + MER121 Unknown Unknown 17 196 -216 5 842 272 27 27 0 chr12 33796535 33796572 -87460958 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 842 235 258 182 25 chr12 33796641 33796788 -87460742 - MIR SINE MIR -84 184 11 5 842 849 309 101 56 chr12 33797922 33798495 -87459035 - L1ME2 LINE L1 -13 6151 5553 5 842 555 176 0 30 chr12 33798620 33798734 -87458796 + B1_Mur3 SINE Alu 18 128 -21 5 842 312 262 128 15 chr12 33798765 33798970 -87458560 - L1ME2 LINE L1 -756 5390 5151 5 842 208 130 43 0 chr12 33799087 33799133 -87458397 + G-rich Low_complexity Low_complexity 3 50 0 5 842 228 182 0 0 chr12 33799166 33799210 -87458320 + CT-rich Low_complexity Low_complexity 1 44 0 5 842 2988 55 47 3 chr12 33799767 33800150 -87457380 - MTB LTR MaLR 0 400 1 5 842 1961 104 16 13 chr12 33800511 33800814 -87456716 - L1_Mus2 LINE L1 -3 6563 6260 5 842 221 363 43 17 chr12 33800814 33800929 -87456601 - B4A SINE B4 -170 122 5 5 842 360 287 151 20 chr12 33801062 33801361 -87456169 + L1MC1 LINE L1 5821 6158 -175 5 842 276 279 56 34 chr12 33801531 33801620 -87455910 - PB1D10 SINE Alu -32 117 27 5 842 252 351 53 0 chr12 33802010 33802104 -87455426 + PB1D9 SINE Alu 6 104 -16 5 842 758 183 35 0 chr12 33802352 33802494 -87455036 + B1_Mus1 SINE Alu 2 148 0 5 842 418 289 37 37 chr12 33803034 33803196 -87454334 + RSINE1 SINE B4 4 165 0 5 842 940 219 109 39 chr12 33803587 33803843 -87453687 + RMER13A LTR ERVK 121 394 -466 5 842 308 256 0 25 chr12 33804521 33804601 -87452929 - Lx8 LINE L1 -260 7213 7136 5 842 361 232 103 21 chr12 33804655 33804752 -87452778 + B3 SINE B2 4 108 -108 5 842 549 115 0 0 chr12 33804771 33804867 -87452663 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 842 346 355 8 16 chr12 33805071 33805197 -87452333 + Charlie23a DNA MER1_type 129 253 -86 5 842 342 0 0 0 chr12 33805323 33805361 -87452169 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 842 270 211 300 9 chr12 33805371 33805481 -87452049 - B3 SINE B2 -71 145 4 5 842 701 196 60 0 chr12 33806328 33806461 -87451069 + B1_Mur2 SINE Alu 2 142 -7 5 842 607 250 107 43 chr12 33807344 33807620 -87449910 - L1MB5 LINE L1 -8 6175 5856 5 842 402 39 0 0 chr12 33807701 33807753 -87449777 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 842 346 293 80 10 chr12 33807839 33808007 -87449523 + MER5A DNA MER1_type 9 184 -5 5 842 990 261 102 88 chr12 33808025 33808399 -87449131 + MTE2a LTR MaLR 1 379 0 5 842 231 232 18 18 chr12 33808399 33808456 -87449074 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 842 186 314 0 0 chr12 33809521 33809572 -87447958 + L3b LINE CR1 71 121 -361 5 842 1769 138 26 56 chr12 33809778 33810117 -87447413 + ORR1A4 LTR MaLR 1 329 0 5 842 608 313 124 68 chr12 33810241 33810653 -87446877 + MLT1J LTR MaLR 48 482 -30 5 842 274 281 155 10 chr12 33810773 33810870 -87446660 + PB1 SINE Alu 2 112 -15 5 842 254 206 15 0 chr12 33810877 33810945 -87446585 + GA-rich Low_complexity Low_complexity 1 69 0 5 842 206 238 0 0 chr12 33811238 33811280 -87446250 - MIR SINE MIR -8 254 213 5 842 2323 209 149 20 chr12 33812393 33813163 -87444367 + L1MC1 LINE L1 5204 6073 -260 5 842 285 229 46 0 chr12 33813199 33813325 -87444205 + L1MC2 LINE L1 6260 6333 -11 5 842 228 67 0 0 chr12 33813401 33813431 -87444099 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 842 196 225 47 5 chr12 33814437 33814501 -87443029 + MIRm SINE MIR 43 104 -172 5 842 648 0 0 0 chr12 33814726 33814798 -87442732 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 842 516 32 0 0 chr12 33814883 33814945 -87442585 + (TCCC)n Simple_repeat Simple_repeat 2 63 0 5 842 643 237 15 0 chr12 33814986 33815121 -87442409 - ID_B1 SINE B4 -4 220 84 5 842 347 268 0 0 chr12 33815512 33815583 -87441947 - MIRb SINE MIR -3 265 195 5 842 304 305 111 72 chr12 33815602 33815881 -87441649 - L1ME3B LINE L1 -11 6229 5940 5 842 21 36 0 0 chr12 33816172 33816200 -87441330 + AT_rich Low_complexity Low_complexity 1 28 0 5 842 686 170 6 0 chr12 33816320 33816491 -87441039 + (CA)n Simple_repeat Simple_repeat 2 173 0 5 105 883 95 13 0 chr12 33816506 33816664 -87440866 + (CA)n Simple_repeat Simple_repeat 2 161 0 5 843 3244 263 73 27 chr12 33817804 33818284 -87439246 - RCHARR1 DNA MER1_type 0 974 499 5 843 1172 82 0 0 chr12 33818284 33818431 -87439099 - B1_Mus2 SINE Alu 0 147 1 5 843 3244 263 73 27 chr12 33818431 33818877 -87438653 - RCHARR1 DNA MER1_type -476 498 5 5 843 247 107 33 82 chr12 33819191 33819252 -87438278 + L1Md_F3 LINE L1 5745 5802 -782 5 843 885 157 14 7 chr12 33819309 33819457 -87438073 - B1_Mur4 SINE Alu -1 149 1 5 843 343 333 26 0 chr12 33819576 33819690 -87437840 + L2a LINE L2 3310 3426 0 5 843 1369 144 96 0 chr12 33820340 33820386 -87437144 + ORR1C2 LTR MaLR 134 184 -200 5 843 873 89 0 0 chr12 33820386 33820510 -87437020 + (TC)n Simple_repeat Simple_repeat 1 124 0 5 843 1369 144 96 0 chr12 33820510 33820692 -87436838 + ORR1C2 LTR MaLR 185 383 -1 5 843 482 326 93 18 chr12 33820883 33821108 -87436422 - MLT1D LTR MaLR -17 488 247 5 843 519 227 21 0 chr12 33821811 33821908 -87435622 + PB1D9 SINE Alu 9 107 -13 5 843 354 285 72 14 chr12 33821926 33822065 -87435465 + B1F SINE Alu 3 149 0 5 843 317 272 0 12 chr12 33822066 33822148 -87435382 + ID4 SINE ID 2 82 -1 5 843 208 53 0 50 chr12 33822153 33822193 -87435337 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 843 240 311 99 117 chr12 33822284 33822455 -87435075 + B4 SINE B4 52 219 -73 5 843 775 176 0 0 chr12 33822331 33822462 -87435068 + B1_Mur3 SINE Alu 19 149 0 5 843 2001 162 35 6 chr12 33822673 33823021 -87434509 - ORR1B1 LTR MaLR -8 386 29 5 843 212 211 0 19 chr12 33823035 33823088 -87434442 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 843 430 224 301 17 chr12 33823755 33823928 -87433602 - ID_B1 SINE B4 -1 223 2 5 843 506 279 0 0 chr12 33824466 33824577 -87432953 - PB1D10 SINE Alu 0 117 7 5 843 1734 21 0 0 chr12 33825087 33825279 -87432251 - B2_Mm1a SINE B2 0 193 2 5 843 510 31 0 0 chr12 33826153 33826217 -87431313 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 843 526 144 67 0 chr12 33827448 33827538 -87429992 - PB1D10 SINE Alu -2 115 20 5 843 415 349 143 28 chr12 33827819 33828269 -87429261 + L1M5 LINE L1 5319 5824 -338 5 843 912 292 47 25 chr12 33828326 33828536 -87428994 + B4 SINE B4 1 216 -76 5 843 304 22 44 0 chr12 33828536 33828581 -87428949 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 843 912 292 47 25 chr12 33828581 33828644 -87428886 + B4 SINE B4 217 279 -13 5 843 1173 227 109 13 chr12 33828833 33829137 -87428393 - ORR1D1 LTR MaLR -1 373 41 5 843 364 198 181 38 chr12 33829580 33829668 -87427862 + B1F SINE Alu 30 136 -13 5 843 212 0 0 35 chr12 33829668 33829697 -87427833 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 5 843 364 198 181 38 chr12 33829697 33829713 -87427817 + B1F SINE Alu 137 149 0 5 843 621 128 0 0 chr12 33829727 33829829 -87427701 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 843 226 181 24 153 chr12 33833796 33833881 -87423649 + RLTR10B LTR ERVK 5 78 -214 5 843 1043 301 67 18 chr12 33835585 33836035 -87421495 - L1MB4 LINE L1 -20 6160 5689 5 843 213 116 45 23 chr12 33836725 33836769 -87420761 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 5 843 265 368 86 57 chr12 33839112 33839484 -87418046 - L2b LINE L2 -38 3337 2955 5 843 477 314 102 25 chr12 33839494 33839690 -87417840 - MER20 DNA MER1_type -5 214 4 5 843 300 261 15 0 chr12 33841349 33841414 -87416116 + ID4_ SINE ID 3 68 -15 5 843 551 344 35 0 chr12 33841445 33841730 -87415800 + L1MB3 LINE L1 5879 6173 -10 5 843 376 259 199 14 chr12 33841752 33841893 -87415637 + MIRb SINE MIR 33 199 -69 5 843 482 354 36 49 chr12 33842041 33842264 -87415266 - MIRb SINE MIR -22 246 27 5 843 180 100 67 0 chr12 33842622 33842652 -87414878 + L3 LINE CR1 116 147 -4342 5 843 270 158 52 13 chr12 33844629 33844706 -87412824 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 5 843 282 125 0 0 chr12 33845782 33845830 -87411700 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 5 843 813 21 0 0 chr12 33846108 33846203 -87411327 + (TCCCC)n Simple_repeat Simple_repeat 4 98 0 5 843 183 42 0 0 chr12 33846208 33846232 -87411298 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 843 839 223 13 104 chr12 33846596 33846826 -87410704 + ID_B1 SINE B4 9 217 -7 5 843 441 318 25 19 chr12 33846835 33846992 -87410538 + MER58B DNA MER1_type 184 341 0 6 843 541 294 82 43 chr12 33848001 33848282 -87409248 - L1MB3 LINE L1 -16 6167 5876 6 843 1210 98 49 5 chr12 33848314 33848498 -87409032 - B2_Mm1t SINE B2 -1 192 1 6 843 798 150 144 77 chr12 33848502 33848683 -87408847 - B3 SINE B2 -1 194 2 6 843 3860 85 4 2 chr12 33848695 33849204 -87408326 + L1_Mus4 LINE L1 6127 6636 0 6 843 242 240 150 40 chr12 33849211 33849311 -87408219 - L1MB3 LINE L1 -367 5813 5703 6 843 441 0 0 0 chr12 33849612 33849661 -87407869 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 843 432 0 0 0 chr12 33849801 33849849 -87407681 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 843 476 232 174 53 chr12 33849850 33849982 -87407548 - RSINE1 SINE B4 -15 150 3 6 843 214 295 57 89 chr12 33850132 33850255 -87407275 + MIRm SINE MIR 7 125 -151 6 843 270 286 14 0 chr12 33850835 33850905 -87406625 + MIRb SINE MIR 116 186 -82 6 843 1076 292 111 17 chr12 33853233 33853828 -87403702 - L1MB7 LINE L1 -1 6183 5533 6 843 196 77 51 0 chr12 33853851 33853890 -87403640 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 843 863 28 19 0 chr12 33853892 33853998 -87403532 - B1_Mm SINE Alu -1 146 39 6 843 334 256 67 41 chr12 33854029 33854193 -87403337 - L1MB7 LINE L1 -713 5471 5298 6 843 234 321 216 50 chr12 33854330 33854746 -87402784 - L1MB7 LINE L1 -1085 5061 4577 6 843 338 250 75 5 chr12 33855143 33855292 -87402238 - L1MB7 LINE L1 -1662 4478 4320 6 843 770 320 45 14 chr12 33855394 33855819 -87401711 - L1MB7 LINE L1 -1986 4160 3723 6 843 378 317 162 90 chr12 33855867 33856238 -87401292 + MLT1G3 LTR MaLR 95 478 -11 6 843 724 261 51 23 chr12 33856447 33856663 -87400867 - ID_B1 SINE B4 -2 222 1 6 843 390 240 0 0 chr12 33856670 33856745 -87400785 - ID_B1 SINE B4 -1 223 149 6 843 254 224 0 0 chr12 33857296 33857345 -87400185 + L1MB7 LINE L1 5419 5467 -711 6 843 577 297 175 31 chr12 33857416 33857798 -87399732 + L1MB7 LINE L1 5713 6149 -31 6 843 223 314 76 49 chr12 33858115 33858259 -87399271 - MIR SINE MIR -94 168 21 6 843 504 0 0 0 chr12 33858265 33858321 -87399209 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 843 279 0 0 0 chr12 33858365 33858396 -87399134 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 843 432 0 0 0 chr12 33858430 33858478 -87399052 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 843 459 0 0 0 chr12 33859420 33859471 -87398059 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 843 333 68 0 0 chr12 33861225 33861269 -87396261 + (A)n Simple_repeat Simple_repeat 1 44 0 6 843 305 267 9 0 chr12 33861644 33861760 -87395770 + CT-rich Low_complexity Low_complexity 4 120 0 6 843 217 213 78 47 chr12 33861760 33861824 -87395706 - ID2 SINE ID -11 72 7 6 843 2007 145 85 41 chr12 33862457 33862596 -87394934 + ORR1C2 LTR MaLR 3 148 -236 6 843 941 128 42 7 chr12 33862596 33862738 -87394792 - B1_Mus1 SINE Alu 0 148 2 6 843 2007 145 85 41 chr12 33862738 33862964 -87394566 + ORR1C2 LTR MaLR 149 384 0 6 843 402 206 133 10 chr12 33863393 33863491 -87394039 - PB1D7 SINE Alu -7 113 4 6 843 247 349 22 54 chr12 33864197 33864261 -87393269 + L1M5 LINE L1 5672 5733 -391 6 843 940 260 24 5 chr12 33864261 33864470 -87393060 + B3 SINE B2 1 213 -3 6 843 195 42 0 0 chr12 33864471 33864495 -87393035 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 6 843 247 349 22 54 chr12 33864495 33864613 -87392917 + L1M5 LINE L1 5734 5850 -274 6 843 195 341 54 23 chr12 33864636 33864765 -87392765 - L2 LINE L2 -813 2606 2474 6 843 225 0 0 0 chr12 33865922 33865947 -87391583 + (CAGCT)n Simple_repeat Simple_repeat 3 27 0 6 843 220 253 45 67 chr12 33866169 33866258 -87391272 + MIR SINE MIR 64 150 -58 6 843 478 235 94 17 chr12 33866265 33866382 -87391148 - B1F SINE Alu -11 138 13 6 843 593 307 173 48 chr12 33868299 33868381 -87389149 + MTC LTR MaLR 11 87 -334 6 843 1505 96 67 0 chr12 33868381 33868590 -87388940 + URR1A DNA MER1_type 4 226 0 6 843 593 288 189 33 chr12 33868590 33868873 -87388657 + MTC LTR MaLR 88 407 -14 6 843 220 222 0 82 chr12 33868963 33869012 -87388518 - B1F1 SINE Alu -40 109 65 6 843 296 342 105 14 chr12 33869415 33869562 -87387968 + MIR SINE MIR 3 168 -108 6 843 309 283 30 10 chr12 33869665 33869765 -87387765 + MER46C DNA MER2_type 235 336 -2 6 843 359 260 59 10 chr12 33869773 33869874 -87387656 + MIRb SINE MIR 163 268 0 6 843 261 0 0 0 chr12 33870799 33870828 -87386702 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 843 593 312 7 0 chr12 33870998 33871136 -87386394 - B1F1 SINE Alu -6 143 5 6 843 562 275 127 22 chr12 33871974 33872345 -87385185 - HAL1 LINE L1 -925 1582 1173 6 843 219 328 0 0 chr12 33872532 33872596 -87384934 + CT-rich Low_complexity Low_complexity 4 67 0 6 843 357 208 0 0 chr12 33873498 33873575 -87383955 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 843 2851 289 64 39 chr12 33873618 33874697 -87382833 - Lx8 LINE L1 -145 7328 6223 6 843 238 261 136 0 chr12 33875454 33875542 -87381988 - MIRm SINE MIR -147 129 30 6 843 828 254 33 23 chr12 33876249 33876463 -87381067 + B3 SINE B2 1 216 0 6 843 488 278 76 0 chr12 33877653 33877797 -87379733 - RSINE1 SINE B4 0 165 11 6 843 617 135 0 50 chr12 33877804 33877905 -87379625 - B1_Mus2 SINE Alu 0 147 52 6 843 372 133 0 0 chr12 33877924 33877984 -87379546 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 6 843 462 240 0 161 chr12 33877984 33878158 -87379372 - B1F2 SINE Alu -1 148 3 6 843 22 0 0 0 chr12 33878820 33878842 -87378688 + AT_rich Low_complexity Low_complexity 1 22 0 6 843 366 339 182 48 chr12 33878871 33879448 -87378082 - HAL1 LINE L1 0 2507 1854 6 843 329 244 24 0 chr12 33879579 33879661 -87377869 - HAL1 LINE L1 -792 1715 1632 6 843 328 305 171 24 chr12 33879719 33879855 -87377675 + B4A SINE B4 2 149 -143 6 843 198 0 0 0 chr12 33879855 33879877 -87377653 + (CTAG)n Simple_repeat Simple_repeat 3 24 0 6 843 328 305 171 24 chr12 33879877 33879992 -87377538 + B4A SINE B4 150 289 -3 6 843 23 0 0 0 chr12 33880040 33880063 -87377467 + AT_rich Low_complexity Low_complexity 1 23 0 6 843 446 240 76 9 chr12 33880775 33880880 -87376650 + PB1D9 SINE Alu 1 112 -8 6 843 1263 98 32 5 chr12 33881361 33881546 -87375984 - B2_Mm2 SINE B2 -4 191 2 6 843 247 325 110 7 chr12 33881641 33881796 -87375734 + L3 LINE CR1 3231 3401 -1088 6 843 521 292 26 109 chr12 33881877 33882216 -87375314 - ORR1E LTR MaLR 0 384 55 6 843 307 286 108 30 chr12 33882585 33882751 -87374779 + L3 LINE CR1 3706 3884 -605 6 843 215 281 0 68 chr12 33882778 33882866 -87374664 - L2a LINE L2 -1 3425 3344 6 843 246 335 29 52 chr12 33883146 33883319 -87374211 + L2 LINE L2 2201 2369 -1050 6 843 340 262 65 8 chr12 33883372 33883495 -87374035 - MLT1B LTR MaLR -8 382 253 6 843 258 336 27 27 chr12 33883570 33883680 -87373850 - MLT1B LTR MaLR -161 229 120 6 843 355 264 105 30 chr12 33884199 33884332 -87373198 - B1F SINE Alu -6 143 1 6 843 23 0 0 0 chr12 33884507 33884530 -87373000 + AT_rich Low_complexity Low_complexity 1 23 0 6 843 895 254 20 12 chr12 33884587 33884834 -87372696 + L1MB1 LINE L1 5852 6100 -89 6 843 213 235 20 0 chr12 33884841 33884892 -87372638 + B4 SINE B4 2 53 -239 6 843 562 271 37 12 chr12 33885142 33885303 -87372227 + RSINE1 SINE B4 1 165 0 6 843 738 168 8 16 chr12 33885347 33885474 -87372056 + B1_Mm SINE Alu 13 138 -9 6 843 216 0 0 0 chr12 33885474 33885498 -87372032 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 843 604 303 102 63 chr12 33886469 33886772 -87370758 - MLT1A0 LTR MaLR 0 365 51 6 843 229 245 0 0 chr12 33887221 33887274 -87370256 + C-rich Low_complexity Low_complexity 1 53 0 6 843 192 281 219 0 chr12 33887371 33887435 -87370095 + L2c LINE L2 3234 3311 -76 6 843 1380 62 0 0 chr12 33887894 33888073 -87369457 + (TCCCC)n Simple_repeat Simple_repeat 2 180 0 6 843 377 276 50 25 chr12 33888100 33888219 -87369311 - MER5A DNA MER1_type 0 189 68 6 843 432 0 0 0 chr12 33888960 33889008 -87368522 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 843 247 216 20 0 chr12 33889424 33889475 -87368055 - MamSINE1 SINE tRNA -62 228 177 6 843 274 191 21 0 chr12 33890045 33890092 -87367438 + B3 SINE B2 1 48 -168 6 843 374 57 19 0 chr12 33890143 33890196 -87367334 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 6 843 361 285 202 6 chr12 33890535 33890708 -87366822 - MIRb SINE MIR -61 207 1 6 843 287 300 51 51 chr12 33890821 33890958 -87366572 - MIRb SINE MIR -70 198 62 6 843 1550 32 38 0 chr12 33892598 33892784 -87364746 + B2_Mm1a SINE B2 1 193 0 6 843 1226 55 0 0 chr12 33892797 33892943 -87364587 + B1_Mus2 SINE Alu 2 147 0 6 843 386 248 47 19 chr12 33893966 33894073 -87363457 - MLT1A1 LTR MaLR 0 408 299 6 843 609 110 0 0 chr12 33894162 33894253 -87363277 + (GGA)n Simple_repeat Simple_repeat 1 91 0 6 843 210 254 67 53 chr12 33895993 33896068 -87361462 - L2b LINE L2 -16 3359 3284 6 843 390 21 0 0 chr12 33896647 33896694 -87360836 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 843 333 0 0 0 chr12 33897663 33897700 -87359830 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 843 667 300 83 42 chr12 33897776 33898014 -87359516 + MER44D DNA MER2_type 8 255 -450 6 843 337 283 32 32 chr12 33898014 33898109 -87359421 - MLT1A1 LTR MaLR 0 408 314 6 843 563 314 75 5 chr12 33898706 33898892 -87358638 - MER63A DNA AcHobo -11 199 1 6 843 219 36 0 0 chr12 33899086 33899114 -87358416 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 843 22 0 0 0 chr12 33899333 33899355 -87358175 + GC_rich Low_complexity Low_complexity 1 22 0 6 843 483 18 0 0 chr12 33899406 33899462 -87358068 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 843 731 206 43 0 chr12 33899815 33899956 -87357574 - B1_Mus1 SINE Alu 0 148 2 6 843 466 319 154 20 chr12 33899993 33900239 -87357291 + B4A SINE B4 10 288 -4 6 843 991 140 7 0 chr12 33900329 33900472 -87357058 + B1_Mur4 SINE Alu 2 145 -5 6 843 396 0 0 0 chr12 33900512 33900556 -87356974 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 843 332 273 98 8 chr12 33901351 33901473 -87356057 - L1MB7 LINE L1 -9 6169 6037 6 843 844 263 107 1 chr12 33901498 33901820 -87355710 - L1MB7 LINE L1 -188 5996 5640 6 843 219 349 15 0 chr12 33902062 33902128 -87355402 + L2b LINE L2 3308 3374 -1 6 843 342 0 0 0 chr12 33903100 33903138 -87354392 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 843 289 314 113 24 chr12 33903252 33903376 -87354154 + MIR3 SINE MIR 71 205 -3 7 843 188 0 74 0 chr12 33904859 33904886 -87352644 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 7 843 1226 55 0 7 chr12 33904888 33905036 -87352494 - B1_Mm SINE Alu 0 147 1 7 843 258 236 0 132 chr12 33905125 33905208 -87352322 - MLT1A LTR MaLR -238 136 65 7 843 491 276 88 44 chr12 33905416 33905621 -87351909 - MIRb SINE MIR -2 266 53 7 843 1041 141 42 31 chr12 33906185 33906376 -87351154 - B2_Mm2 SINE B2 -1 194 2 7 843 201 132 0 0 chr12 33906407 33906445 -87351085 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 843 375 341 105 23 chr12 33906907 33907078 -87350452 + MIRb SINE MIR 57 241 -27 7 843 234 349 54 54 chr12 33907811 33908032 -87349498 + MIR SINE MIR 32 252 -10 7 843 1154 253 11 39 chr12 33908037 33908321 -87349209 + B4 SINE B4 1 276 -16 7 843 216 67 0 0 chr12 33908327 33908357 -87349173 + (CG)n Simple_repeat Simple_repeat 2 31 0 7 843 351 0 0 0 chr12 33908357 33908395 -87349135 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 843 216 0 0 0 chr12 33908395 33908419 -87349111 + (ATG)n Simple_repeat Simple_repeat 2 25 0 7 843 736 70 20 27 chr12 33908561 33908709 -87348821 + (GA)n Simple_repeat Simple_repeat 1 147 0 7 843 361 0 41 0 chr12 33908759 33908808 -87348722 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 843 316 348 37 43 chr12 33909134 33909296 -87348234 - MER20 DNA MER1_type -58 161 1 7 843 317 323 0 0 chr12 33909683 33909776 -87347754 - RSINE1 SINE B4 0 165 73 7 843 627 62 10 20 chr12 33911118 33911217 -87346313 + (GGA)n Simple_repeat Simple_repeat 2 99 0 7 843 405 313 9 9 chr12 33911362 33911478 -87346052 + PB1D10 SINE Alu 1 116 -1 7 843 299 283 145 47 chr12 33911584 33911777 -87345753 - MIRb SINE MIR 0 268 57 7 843 22 0 0 0 chr12 33911780 33911802 -87345728 + GC_rich Low_complexity Low_complexity 1 22 0 7 843 934 279 41 61 chr12 33912335 33912629 -87344901 + B4 SINE B4 1 288 -4 7 843 181 212 0 0 chr12 33912751 33912784 -87344746 - MIRm SINE MIR -18 258 226 7 843 196 317 193 16 chr12 33912970 33913214 -87344316 - L2 LINE L2 -531 2888 2602 7 843 4574 8 0 0 chr12 33913526 33914019 -87343511 - MT2_Mm LTR ERVL 0 493 1 7 843 305 0 0 0 chr12 33914019 33914057 -87343473 - MERVL-int LTR ERVL 0 5485 5448 7 843 379 179 46 35 chr12 33914057 33914144 -87343386 - ORR1A3-int LTR MaLR -1323 640 553 7 843 39538 15 14 0 chr12 33914144 33919431 -87338099 - MERVL-int LTR ERVL -125 5360 1 7 843 4574 8 0 0 chr12 33919431 33919924 -87337606 - MT2_Mm LTR ERVL 0 493 1 7 843 235 253 95 60 chr12 33920329 33920413 -87337117 + B3A SINE B2 1 87 -111 7 843 647 198 35 0 chr12 33920341 33920457 -87337073 + RSINE1 SINE B4 15 134 -31 7 843 321 47 0 0 chr12 33922696 33922739 -87334791 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 7 843 543 31 0 0 chr12 33922752 33922817 -87334713 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 843 1844 164 73 60 chr12 33923034 33923403 -87334127 - ORR1C1 LTR MaLR 0 378 5 7 843 247 286 16 0 chr12 33923479 33923542 -87333988 - Kanga11a DNA Tc2 -3 967 904 7 843 693 345 127 40 chr12 33923890 33924490 -87333040 - L1MEe LINE L1 -3297 2849 2189 7 843 378 0 0 0 chr12 33924490 33924532 -87332998 + (TATG)n Simple_repeat Simple_repeat 2 43 0 7 843 1243 49 0 0 chr12 33924532 33924676 -87332854 - B1_Mus2 SINE Alu -2 145 2 7 843 693 276 78 97 chr12 33924676 33924940 -87332590 - L1MEe LINE L1 -3964 2202 1868 7 843 4463 120 25 53 chr12 33925068 33925211 -87332319 - RMER6A LTR ERVK 0 756 640 7 843 1372 90 11 0 chr12 33925211 33925399 -87332131 - B2_Mm1t SINE B2 -3 190 1 7 843 4463 120 25 53 chr12 33925399 33926031 -87331499 - RMER6A LTR ERVK -117 639 3 7 843 235 279 296 24 chr12 33926240 33926365 -87331165 - MER5A1 DNA MER1_type -7 159 1 7 843 1325 134 36 40 chr12 33928068 33928317 -87329213 + Lx LINE L1 6407 6654 0 7 843 299 167 0 0 chr12 33928880 33928940 -87328590 + CT-rich Low_complexity Low_complexity 4 63 0 7 843 182 264 187 9 chr12 33929035 33929142 -87328388 + MIRb SINE MIR 70 195 -73 7 843 483 278 121 20 chr12 33929587 33929785 -87327745 + MIR SINE MIR 9 226 -36 7 843 24 0 0 0 chr12 33930349 33930373 -87327157 + GC_rich Low_complexity Low_complexity 1 24 0 7 843 185 0 0 39 chr12 33931634 33931660 -87325870 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 843 227 249 93 0 chr12 33931875 33931967 -87325563 + L2c LINE L2 3320 3426 0 7 843 219 349 84 39 chr12 33932023 33932178 -87325352 - MER5A DNA MER1_type -20 169 8 7 843 226 129 32 0 chr12 33932250 33932312 -87325218 + T-rich Low_complexity Low_complexity 2 65 0 7 843 332 174 100 14 chr12 33932347 33932417 -87325113 + ID4_ SINE ID 2 77 -6 7 843 275 257 122 0 chr12 33932417 33932491 -87325039 + ID_B1 SINE B4 122 204 -20 7 843 636 286 297 7 chr12 33933166 33933462 -87324068 - MLT1F1 LTR MaLR 0 569 188 7 843 274 373 0 22 chr12 33934216 33934353 -87323177 + L3 LINE CR1 3585 3718 -771 7 843 673 91 9 18 chr12 33935022 33935134 -87322396 + (CCA)n Simple_repeat Simple_repeat 1 111 0 7 843 609 323 107 26 chr12 33935138 33935683 -87321847 + L2c LINE L2 2687 3293 -82 7 843 442 333 80 5 chr12 33935811 33935998 -87321532 + MIRc SINE MIR 52 252 -16 7 843 437 214 19 7 chr12 33936048 33936203 -87321327 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 7 843 584 156 9 0 chr12 33936851 33936960 -87320570 + (CA)n Simple_repeat Simple_repeat 2 111 0 7 843 383 220 0 32 chr12 33937258 33937352 -87320178 - MLT1A1 LTR MaLR 0 408 318 7 843 184 250 0 37 chr12 33938177 33938231 -87319299 + MIRb SINE MIR 181 232 -36 7 843 678 25 0 0 chr12 33938403 33938483 -87319047 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 843 222 118 0 0 chr12 33939120 33939154 -87318376 + (T)n Simple_repeat Simple_repeat 1 34 0 7 843 522 83 0 0 chr12 33939756 33939828 -87317702 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 843 252 0 0 0 chr12 33939828 33939856 -87317674 + (CG)n Simple_repeat Simple_repeat 2 29 0 7 843 405 269 28 0 chr12 33940145 33940253 -87317277 + PB1D7 SINE Alu 2 112 -8 7 843 285 260 28 65 chr12 33941956 33942063 -87315467 + ID_B1 SINE B4 70 172 -52 7 843 283 265 39 58 chr12 33941973 33942077 -87315453 + PB1D10 SINE Alu 7 108 -9 7 843 209 239 0 21 chr12 33942077 33942124 -87315406 + GA-rich Low_complexity Low_complexity 1 46 0 7 843 291 54 0 0 chr12 33942194 33942231 -87315299 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 843 823 259 6 11 chr12 33942252 33942428 -87315102 + B3 SINE B2 1 175 -41 7 843 276 287 94 65 chr12 33943123 33943261 -87314269 + MLT2F LTR ERVL 4 145 -518 7 843 681 332 89 12 chr12 33943298 33943557 -87313973 + MLT2F LTR ERVL 256 534 -129 7 843 26 50 0 0 chr12 33943837 33943877 -87313653 + AT_rich Low_complexity Low_complexity 1 40 0 7 843 745 200 21 0 chr12 33944453 33944593 -87312937 + B3A SINE B2 3 145 -53 7 843 375 78 0 0 chr12 33944603 33944654 -87312876 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 843 547 188 107 23 chr12 33944744 33944875 -87312655 + B1_Mus1 SINE Alu 1 142 -6 7 843 770 82 52 0 chr12 33944881 33945015 -87312515 + (GGAA)n Simple_repeat Simple_repeat 3 143 0 7 843 427 318 0 30 chr12 33945019 33945152 -87312378 + B1F1 SINE Alu 4 132 -17 7 843 181 139 47 0 chr12 33945218 33945261 -87312269 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 7 843 279 0 0 0 chr12 33945264 33945295 -87312235 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 843 501 241 0 72 chr12 33945296 33945421 -87312109 - RSINE1 SINE B4 -41 124 9 7 843 352 277 33 20 chr12 33946239 33946390 -87311140 - L1MC4 LINE L1 -122 7920 7768 7 843 236 170 43 0 chr12 33946446 33946493 -87311037 - L1MC4 LINE L1 -379 7663 7615 7 843 204 274 20 0 chr12 33947063 33947114 -87310416 - MIR3 SINE MIR -46 162 111 7 844 1929 162 22 21 chr12 33947962 33948326 -87309204 - ORR1B2 LTR MaLR 0 367 32 7 844 263 257 162 0 chr12 33948502 33948576 -87308954 + MIR SINE MIR 26 111 -151 7 844 257 224 48 84 chr12 33949345 33949428 -87308102 - ID4_ SINE ID -2 81 2 7 844 371 227 78 22 chr12 33949428 33949518 -87308012 - PB1D10 SINE Alu -2 115 21 7 844 303 326 0 10 chr12 33950252 33950351 -87307179 + L1M5 LINE L1 3583 3680 -2466 7 844 564 144 115 18 chr12 33951216 33951329 -87306201 - B3 SINE B2 -92 124 1 7 844 226 323 0 30 chr12 33951818 33951885 -87305645 + B4A SINE B4 81 145 -147 7 844 477 282 39 0 chr12 33951835 33951938 -87305592 + PB1D10 SINE Alu 11 117 0 7 844 257 277 0 10 chr12 33952515 33952617 -87304913 + CT-rich Low_complexity Low_complexity 1 101 0 7 844 307 319 31 71 chr12 33953102 33953298 -87304232 - MIRc SINE MIR -9 259 72 7 844 1236 115 15 25 chr12 33953619 33953815 -87303715 + B2_Mm2 SINE B2 1 194 -1 7 844 399 311 65 8 chr12 33953980 33954103 -87303427 + B4A SINE B4 4 133 -159 7 844 305 24 24 0 chr12 33954222 33954264 -87303266 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 844 304 375 33 0 chr12 33954328 33954448 -87303082 - L2a LINE L2 -30 3396 3273 7 844 253 337 0 31 chr12 33954585 33954683 -87302847 - L2a LINE L2 -342 3077 2983 7 844 476 244 212 17 chr12 33954716 33954895 -87302635 + B3 SINE B2 1 214 -2 7 844 411 73 0 0 chr12 33955155 33955210 -87302320 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 7 844 683 332 57 41 chr12 33955459 33955968 -87301562 - L1MC3 LINE L1 -283 7502 6986 7 844 261 266 191 9 chr12 33955968 33956078 -87301452 + RSINE1 SINE B4 3 132 -33 7 844 2051 268 66 35 chr12 33956283 33956643 -87300887 - L1MC3 LINE L1 -944 6841 6512 7 844 225 0 0 0 chr12 33956643 33956668 -87300862 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 7 844 2051 265 70 36 chr12 33956668 33956976 -87300554 - L1MC3 LINE L1 -1274 6511 6176 7 844 402 301 61 9 chr12 33957318 33957432 -87300098 - B1F SINE Alu -28 121 2 7 844 226 336 17 50 chr12 33957325 33957444 -87300086 - MT2B LTR ERVL -332 269 155 8 844 864 210 39 78 chr12 33957458 33957690 -87299840 + MTEb LTR MaLR 1 223 -156 8 844 378 0 0 0 chr12 33959073 33959115 -87298415 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 844 814 302 56 4 chr12 33959427 33959676 -87297854 + MLT1C LTR MaLR 200 461 -6 8 844 199 365 16 0 chr12 33960139 33960202 -87297328 - L3 LINE CR1 -1 4488 4425 8 844 590 340 41 8 chr12 33960256 33960502 -87297028 - MIR SINE MIR 0 262 9 8 844 1076 226 4 18 chr12 33962119 33962344 -87295186 + ID_B1 SINE B4 3 224 0 8 844 1299 194 0 0 chr12 33962952 33963174 -87294356 - URR1A DNA MER1_type -3 223 2 8 844 432 0 0 0 chr12 33963445 33963493 -87294037 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 844 662 217 0 0 chr12 33964590 33964719 -87292811 + B1_Mur1 SINE Alu 3 131 -18 8 844 351 163 0 24 chr12 33964719 33964815 -87292715 + B1F SINE Alu 49 131 -18 8 844 374 250 37 46 chr12 33964828 33964937 -87292593 + B1_Mur4 SINE Alu 43 150 0 8 844 566 259 80 10 chr12 33964955 33965154 -87292376 + L1M5 LINE L1 5255 5467 -657 8 844 381 315 29 132 chr12 33965247 33965292 -87292238 + B4A SINE B4 61 198 -94 8 844 918 148 0 34 chr12 33965292 33965439 -87292091 + B1_Mur4 SINE Alu 9 150 0 8 844 381 315 29 132 chr12 33965439 33965452 -87292078 + B4A SINE B4 199 244 -48 8 844 380 198 37 12 chr12 33965490 33965572 -87291958 + B1F SINE Alu 1 84 -65 8 844 738 220 66 57 chr12 33965765 33965977 -87291553 - B3 SINE B2 -1 215 2 8 844 416 332 132 5 chr12 33966110 33966307 -87291223 - MTD LTR MaLR -151 268 47 8 844 243 0 0 0 chr12 33966359 33966386 -87291144 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 844 793 167 23 0 chr12 33966389 33966521 -87291009 - B1_Mur1 SINE Alu -14 135 1 8 844 235 170 73 36 chr12 33966526 33966581 -87290949 - MTD LTR MaLR -363 58 2 8 844 229 191 0 0 chr12 33966655 33966697 -87290833 + (CAGA)n Simple_repeat Simple_repeat 4 45 0 8 844 375 23 0 0 chr12 33966698 33966742 -87290788 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 844 423 78 0 0 chr12 33966742 33966806 -87290724 + (GA)n Simple_repeat Simple_repeat 1 64 0 8 844 444 218 0 0 chr12 33966823 33967002 -87290528 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 844 350 271 93 9 chr12 33967544 33967652 -87289878 - HAL1-3A_ME LINE L1 -788 2070 1954 8 844 504 224 2 0 chr12 33967662 33968085 -87289445 + (TG)n Simple_repeat Simple_repeat 1 424 0 8 844 272 288 27 0 chr12 33968763 33968836 -87288694 - MIRc SINE MIR -88 180 106 8 844 277 210 16 0 chr12 33969052 33969114 -87288416 + ID2 SINE ID 2 64 -19 8 844 374 261 191 0 chr12 33969156 33969271 -87288259 + B1F SINE Alu 4 140 -9 8 844 473 154 11 0 chr12 33969273 33969364 -87288166 + GA-rich Low_complexity Low_complexity 1 92 0 8 844 666 318 9 35 chr12 33969711 33969939 -87287591 + ID_B1 SINE B4 2 223 -1 8 844 838 136 30 0 chr12 33969939 33970108 -87287422 + GA-rich Low_complexity Low_complexity 2 175 0 8 844 315 312 157 11 chr12 33970310 33970488 -87287042 + MIR SINE MIR 14 217 -45 8 844 1139 330 38 42 chr12 33971176 33971653 -87285877 - MER74A LTR ERVL 0 558 84 8 844 440 35 17 0 chr12 33972221 33972279 -87285251 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 844 432 0 0 0 chr12 33972438 33972486 -87285044 + (TTAGG)n Simple_repeat Simple_repeat 4 51 0 8 844 237 193 67 50 chr12 33972515 33972575 -87284955 - ID4 SINE ID -15 68 8 8 844 216 0 0 0 chr12 33973032 33973056 -87284474 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 8 844 302 269 0 0 chr12 33973362 33973429 -87284101 - ID4_ SINE ID 0 83 17 8 844 706 176 0 51 chr12 33974724 33974880 -87282650 + B1F2 SINE Alu 1 148 -1 8 844 281 321 0 0 chr12 33974940 33975024 -87282506 - RSINE1 SINE B4 -1 164 81 8 844 191 268 91 20 chr12 33975153 33975252 -87282278 - L2c LINE L2 -257 3130 3025 8 844 307 262 0 0 chr12 33975582 33975643 -87281887 + ID4 SINE ID 5 65 -18 8 844 494 328 159 49 chr12 33976206 33976716 -87280814 - LTR82A LTR ERVL 0 872 307 8 844 451 204 71 0 chr12 33976720 33976818 -87280712 + PB1D10 SINE Alu 6 110 -7 8 844 26 0 0 0 chr12 33977152 33977178 -87280352 + AT_rich Low_complexity Low_complexity 1 26 0 8 844 333 47 0 0 chr12 33977216 33977259 -87280271 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 844 449 311 34 25 chr12 33977439 33977643 -87279887 + B3 SINE B2 4 209 -7 8 844 686 228 28 0 chr12 33977959 33978104 -87279426 + B1_Mur1 SINE Alu 1 149 0 8 844 239 333 40 0 chr12 33978385 33978460 -87279070 + ID4 SINE ID 2 79 -4 8 844 481 278 9 9 chr12 33978491 33978607 -87278923 - PB1D10 SINE Alu -1 116 1 8 844 23 33 0 0 chr12 33978751 33978781 -87278749 + AT_rich Low_complexity Low_complexity 1 30 0 8 844 607 256 8 8 chr12 33978879 33979013 -87278517 + RSINE1 SINE B4 3 136 -29 8 844 324 0 0 0 chr12 33979015 33979051 -87278479 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 844 338 197 79 0 chr12 33979185 33979261 -87278269 + ID4 SINE ID 1 82 -1 8 844 365 257 55 0 chr12 33980947 33981056 -87276474 - MER2 DNA MER2_type -80 265 151 8 844 3824 120 42 0 chr12 33981144 33981719 -87275811 - Lx4A LINE L1 0 7058 6460 8 844 270 0 0 0 chr12 33981735 33981765 -87275765 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 844 481 277 25 0 chr12 33981776 33981895 -87275635 + B3A SINE B2 1 122 -76 8 844 369 0 0 0 chr12 33981909 33981950 -87275580 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 844 754 186 31 0 chr12 33981967 33982096 -87275434 + B1_Mus1 SINE Alu 4 136 -12 8 844 306 50 0 0 chr12 33982100 33982140 -87275390 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 844 753 70 0 0 chr12 33982142 33982242 -87275288 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 8 844 459 0 0 0 chr12 33982319 33982370 -87275160 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 8 844 369 0 0 0 chr12 33983619 33983660 -87273870 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 8 844 458 167 202 19 chr12 33983664 33983731 -87273799 - B1_Mur2 SINE Alu -16 133 57 8 844 297 0 0 0 chr12 33983731 33983764 -87273766 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 844 458 167 202 19 chr12 33983764 33983800 -87273730 - B1_Mur2 SINE Alu -93 56 11 8 844 438 252 15 45 chr12 33983862 33983995 -87273535 - RSINE1 SINE B4 0 165 37 8 844 592 196 27 0 chr12 33984483 33984595 -87272935 - B1_Mus2 SINE Alu 0 147 33 8 844 1088 284 146 18 chr12 33984700 33985151 -87272379 - RMER5 LTR ERV1 -2 532 24 8 844 180 0 0 0 chr12 33985418 33985438 -87272092 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 8 844 706 50 20 0 chr12 33986163 33986262 -87271268 + (TAGA)n Simple_repeat Simple_repeat 3 103 0 8 844 775 78 17 0 chr12 33987266 33987382 -87270148 + (TC)n Simple_repeat Simple_repeat 2 119 0 8 844 454 243 0 129 chr12 33988970 33989140 -87268390 + B1_Mur1 SINE Alu 2 149 0 8 844 432 270 88 28 chr12 33990156 33990458 -87267072 - MLT1B LTR MaLR -38 352 2 8 844 261 0 0 0 chr12 33990597 33990626 -87266904 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 844 450 0 0 0 chr12 33990863 33990913 -87266617 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 844 342 0 0 0 chr12 33991527 33991565 -87265965 + (GGGGA)n Simple_repeat Simple_repeat 2 39 0 8 844 326 23 0 23 chr12 33991748 33991792 -87265738 + (TTA)n Simple_repeat Simple_repeat 3 45 0 8 844 897 171 0 0 chr12 33991793 33991933 -87265597 - B1_Mus1 SINE Alu -6 142 3 8 844 432 240 22 88 chr12 33991933 33991969 -87265561 - MT2B LTR ERVL -445 156 130 8 844 269 267 208 9 chr12 33992421 33992527 -87265003 + L3 LINE CR1 3592 3718 -771 8 844 1011 286 78 30 chr12 33993623 33994019 -87263511 - L1MB5 LINE L1 -11 6163 5749 8 844 996 181 93 0 chr12 33994055 33994248 -87263282 - B3 SINE B2 0 216 6 8 844 748 169 27 27 chr12 33994290 33994436 -87263094 - B1_Mur2 SINE Alu -1 148 3 8 844 519 17 0 0 chr12 33994446 33994506 -87263024 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 844 691 176 0 53 chr12 33994612 33994744 -87262786 - B1_Mur1 SINE Alu -4 145 21 8 844 811 269 48 88 chr12 33994752 33995121 -87262409 - L1MB3 LINE L1 -41 6142 5787 8 844 378 0 0 0 chr12 33995155 33995197 -87262333 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 844 488 294 0 25 chr12 33995197 33995319 -87262211 - RSINE1 SINE B4 -41 124 6 8 844 574 266 240 124 chr12 33995333 33995658 -87261872 + MTE2a LTR MaLR 3 365 -14 8 844 1247 54 10 20 chr12 33995693 33995993 -87261537 + (CA)n Simple_repeat Simple_repeat 1 297 0 8 844 1014 254 59 36 chr12 33996104 33996460 -87261070 - L1MB5 LINE L1 -530 5648 5285 8 844 326 299 94 49 chr12 33997445 33997562 -87259968 + RMER10A LTR ERVL 164 279 -163 8 844 1044 0 0 0 chr12 33997562 33997678 -87259852 + (TTCTC)n Simple_repeat Simple_repeat 4 119 0 8 844 326 299 94 49 chr12 33997678 33997827 -87259703 + RMER10A LTR ERVL 280 442 0 8 844 225 239 164 27 chr12 33997851 33997924 -87259606 - ID4 SINE ID 0 83 1 8 844 865 163 13 13 chr12 33997931 33998080 -87259450 - B1_Mur2 SINE Alu 0 149 1 8 844 273 238 0 19 chr12 33998304 33998395 -87259135 - L1MB8 LINE L1 -173 6011 5925 8 844 447 281 25 8 chr12 33998515 33998637 -87258893 + ID_B1 SINE B4 80 203 -21 8 844 233 260 147 37 chr12 34000667 34000803 -87256727 - L2c LINE L2 -3 3384 3234 1 844 447 240 20 10 chr12 34000892 34000993 -87256537 - MIRc SINE MIR -137 131 30 2 844 617 214 18 0 chr12 34001636 34001748 -87255782 - PB1D10 SINE Alu -2 115 2 3 844 180 152 0 0 chr12 34002149 34002182 -87255348 + T-rich Low_complexity Low_complexity 1 33 0 4 844 234 174 0 0 chr12 34002390 34002436 -87255094 + (TTA)n Simple_repeat Simple_repeat 3 48 0 5 844 210 37 0 0 chr12 34003294 34003321 -87254209 + (AACTG)n Simple_repeat Simple_repeat 5 31 0 6 844 435 84 169 0 chr12 34003512 34003583 -87253947 - B1_Mus2 SINE Alu -12 135 53 7 844 374 305 53 91 chr12 34003860 34004069 -87253461 - MIRb SINE MIR -28 240 40 8 844 589 285 77 32 chr12 34004185 34004341 -87253189 - RSINE1 SINE B4 0 165 3 9 844 513 115 0 0 chr12 34004929 34005016 -87252514 + (TGG)n Simple_repeat Simple_repeat 2 88 0 1 844 1058 222 20 0 chr12 34005669 34005867 -87251663 - B3 SINE B2 -6 210 9 1 844 674 235 0 22 chr12 34005882 34006021 -87251509 - B1_Mur2 SINE Alu -8 141 6 1 844 300 343 61 34 chr12 34005916 34006064 -87251466 - B4 SINE B4 -95 197 46 1 844 372 139 152 0 chr12 34006133 34006212 -87251318 - ORR1D1 LTR MaLR 0 374 284 1 844 558 0 0 0 chr12 34006231 34006293 -87251237 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 844 723 198 23 80 chr12 34006293 34006464 -87251066 - ORR1D1 LTR MaLR -208 166 5 1 844 372 311 66 20 chr12 34006464 34006615 -87250915 + MIRb SINE MIR 96 253 -15 1 844 932 262 9 5 chr12 34007798 34008013 -87249517 + ID_B1 SINE B4 2 217 -7 1 844 21 0 0 0 chr12 34008209 34008230 -87249300 + AT_rich Low_complexity Low_complexity 1 21 0 1 844 605 189 24 0 chr12 34008504 34008668 -87248862 + GA-rich Low_complexity Low_complexity 2 169 0 1 844 228 281 54 33 chr12 34008904 34008996 -87248534 + MIRc SINE MIR 90 183 -85 2 844 261 304 135 71 chr12 34009141 34009311 -87248219 - MIR3 SINE MIR -11 197 17 2 844 485 327 29 73 chr12 34012218 34012492 -87245038 - MT2A LTR ERVL -84 449 188 2 844 361 274 67 17 chr12 34012514 34012633 -87244897 + MIRc SINE MIR 6 130 -138 2 844 1084 226 34 5 chr12 34012763 34012968 -87244562 + B3 SINE B2 1 211 -5 2 844 246 174 0 0 chr12 34013696 34013742 -87243788 + GA-rich Low_complexity Low_complexity 3 48 0 2 844 649 341 56 14 chr12 34013792 34014006 -87243524 + B4A SINE B4 66 288 -4 2 844 206 186 0 23 chr12 34014011 34014055 -87243475 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2 844 336 318 54 70 chr12 34014159 34014268 -87243262 - Tigger5 DNA MER2_type -2217 189 81 2 844 250 250 15 0 chr12 34014268 34014336 -87243194 + tRNA-Ala-GCY_ tRNA tRNA 4 72 -3 2 844 336 318 54 70 chr12 34014336 34014412 -87243118 - Tigger5 DNA MER2_type -2326 80 7 2 844 188 311 56 32 chr12 34014684 34014810 -87242720 - L2 LINE L2 -627 2792 2664 3 844 244 359 53 21 chr12 34014988 34015176 -87242354 - L2 LINE L2 -993 2426 2233 3 844 671 278 146 80 chr12 34015651 34016014 -87241516 - Charlie5 DNA MER1_type -3 2621 2235 3 844 450 229 0 35 chr12 34016575 34016688 -87240842 + PB1D9 SINE Alu 5 113 -7 3 844 347 242 224 45 chr12 34016733 34016867 -87240663 + RSINE1 SINE B4 2 159 -6 3 844 508 269 22 7 chr12 34016897 34017032 -87240498 + B1F SINE Alu 1 137 -12 3 844 208 289 0 0 chr12 34017110 34017155 -87240375 + polypurine Low_complexity Low_complexity 3 47 0 3 844 744 196 0 0 chr12 34018141 34018320 -87239210 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 844 758 175 0 6 chr12 34018366 34018544 -87238986 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 844 189 281 76 83 chr12 34019967 34020099 -87237431 - MIRc SINE MIR -106 162 32 3 844 950 274 53 32 chr12 34020329 34020612 -87236918 - B4 SINE B4 -3 289 1 3 844 585 40 0 0 chr12 34022405 34022481 -87235049 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 844 255 181 42 0 chr12 34023962 34024034 -87233496 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 844 1078 238 161 12 chr12 34024116 34024537 -87232993 - L1MB3 LINE L1 -12 6171 5688 4 844 410 252 0 28 chr12 34024546 34024652 -87232878 + ID_B1 SINE B4 66 168 -56 4 844 436 200 35 0 chr12 34024585 34024670 -87232860 + PB1D10 SINE Alu 21 108 -9 4 844 345 278 85 23 chr12 34024799 34024928 -87232602 - MLT1A1 LTR MaLR -2 406 270 4 844 327 171 0 0 chr12 34025024 34025100 -87232430 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 844 259 323 107 47 chr12 34026267 34026501 -87231029 + AmnSINE1 SINE SINE 3 250 -325 4 844 24 32 0 0 chr12 34027900 34027931 -87229599 + AT_rich Low_complexity Low_complexity 1 31 0 4 844 263 248 75 120 chr12 34028895 34029028 -87228502 - LTR33A_ LTR ERVL -265 266 140 4 844 1337 255 145 33 chr12 34032293 34032784 -87224746 - MER44B DNA MER2_type 0 550 5 4 844 377 219 0 86 chr12 34032958 34033063 -87224467 - ID_B1 SINE B4 0 224 129 5 844 195 69 0 0 chr12 34033241 34033270 -87224260 + (T)n Simple_repeat Simple_repeat 1 29 0 5 844 254 317 171 0 chr12 34033796 34033878 -87223652 + PB1D10 SINE Alu 1 96 -21 5 844 581 221 79 22 chr12 34034069 34034208 -87223322 - B1F2 SINE Alu 0 149 3 5 844 640 267 33 7 chr12 34034208 34034361 -87223169 + B3 SINE B2 32 184 -11 5 844 450 250 0 26 chr12 34034363 34034478 -87223052 - MLT1A1 LTR MaLR -5 403 292 5 844 1856 135 11 87 chr12 34034558 34034914 -87222616 + ORR1A4 LTR MaLR 1 329 0 5 844 1908 128 14 0 chr12 34034927 34035216 -87222314 + MERVL_2A-int LTR ERVL 2292 2584 -3177 5 844 555 118 1 108 chr12 34035216 34035337 -87222193 - ORR1B1 LTR MaLR -251 143 41 5 844 313 328 76 60 chr12 34035352 34035537 -87221993 - ORR1E LTR MaLR -171 188 1 5 844 234 62 0 0 chr12 34036055 34036087 -87221443 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 844 405 0 0 0 chr12 34036087 34036131 -87221399 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 844 422 264 33 0 chr12 34036131 34036222 -87221308 - B3A SINE B2 -104 94 1 6 844 268 259 0 65 chr12 34036258 34036320 -87221210 - B1F SINE Alu -13 136 79 6 844 525 185 231 16 chr12 34036337 34036458 -87221072 + B1_Mm SINE Alu 1 147 0 6 844 192 40 0 0 chr12 34036712 34036737 -87220793 + (CAG)n Simple_repeat Simple_repeat 1 25 0 6 844 584 313 17 17 chr12 34036764 34036995 -87220535 - HAL1 LINE L1 -740 1767 1537 6 844 301 239 119 0 chr12 34037142 34037209 -87220321 - PB1D10 SINE Alu -9 108 34 6 844 229 279 139 0 chr12 34037209 34037220 -87220310 - MT2B LTR ERVL -342 258 170 6 844 332 349 34 87 chr12 34037240 34037504 -87220026 - HAL1 LINE L1 -1116 1391 1142 6 844 206 32 32 0 chr12 34037515 34037546 -87219984 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 844 639 306 57 61 chr12 34037552 34037799 -87219731 - B4A SINE B4 -20 272 27 7 844 585 105 0 0 chr12 34037800 34037886 -87219644 + (TCC)n Simple_repeat Simple_repeat 3 88 0 7 844 243 0 0 0 chr12 34037914 34037941 -87219589 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 7 844 921 161 69 25 chr12 34037942 34038146 -87219384 - Lx4B LINE L1 -4 7054 6842 7 844 780 186 43 0 chr12 34038214 34038354 -87219176 + B1F2 SINE Alu 4 149 0 7 844 2111 148 39 57 chr12 34038392 34038779 -87218751 - ORR1C2 LTR MaLR 0 384 5 7 844 397 231 120 11 chr12 34038780 34038872 -87218658 - PB1D10 SINE Alu -15 102 1 7 844 301 238 0 60 chr12 34038955 34039022 -87218508 - ID4 SINE ID -10 73 11 7 844 212 222 0 0 chr12 34039641 34039677 -87217853 + polypyrimidine Low_complexity Low_complexity 3 38 0 7 844 236 218 18 0 chr12 34039678 34039733 -87217797 - PB1D10 SINE Alu -20 97 42 7 844 259 307 54 102 chr12 34040020 34040187 -87217343 - RSINE1 SINE B4 -4 161 3 8 844 326 240 0 39 chr12 34040343 34040447 -87217083 - L1MC1 LINE L1 -1 6332 6233 8 844 249 312 0 0 chr12 34040701 34040781 -87216749 + L1M1 LINE L1 5696 5775 -528 8 844 431 243 2 12 chr12 34040786 34040881 -87216649 + PB1D10 SINE Alu 5 96 -52 8 844 591 244 7 97 chr12 34040905 34041050 -87216480 + ID_B1 SINE B4 86 217 -7 8 844 305 34 16 48 chr12 34041051 34041113 -87216417 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 8 844 350 280 87 16 chr12 34041113 34041298 -87216232 + L1MA8 LINE L1 5771 5968 -323 8 844 412 242 74 0 chr12 34041298 34041393 -87216137 + PB1D10 SINE Alu 1 102 -15 8 844 207 167 0 0 chr12 34041423 34041465 -87216065 + GA-rich Low_complexity Low_complexity 3 44 0 8 844 327 203 8 0 chr12 34041638 34041711 -87215819 + PB1 SINE Alu 73 144 -5 8 844 215 300 0 20 chr12 34041727 34041778 -87215752 + ID2 SINE ID 18 67 -16 8 844 478 256 68 0 chr12 34041865 34041982 -87215548 + ID_B1 SINE B4 82 206 -18 9 844 336 253 11 21 chr12 34042288 34042381 -87215149 + 4.5SRNA scRNA scRNA 1 92 -2 9 844 780 171 57 0 chr12 34042388 34042528 -87215002 + B1_Mur1 SINE Alu 2 149 0 9 844 200 0 100 0 chr12 34042529 34042559 -87214971 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 9 844 495 288 62 44 chr12 34042704 34042864 -87214666 + B3 SINE B2 51 213 -3 9 844 824 261 28 33 chr12 34042885 34043099 -87214431 + ID_B1 SINE B4 3 215 -9 9 844 296 278 55 11 chr12 34044561 34044652 -87212878 - MLT1L LTR MaLR -14 596 502 9 844 516 32 0 0 chr12 34045423 34045485 -87212045 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 844 289 247 143 0 chr12 34046079 34046156 -87211374 - PB1D10 SINE Alu 0 117 30 9 844 1280 150 18 14 chr12 34046284 34046507 -87211023 + BGLII_B LTR ERVK 1 224 -217 9 844 2361 92 35 0 chr12 34046603 34046919 -87210611 - ORR1A2 LTR MaLR 0 327 1 1 844 645 160 0 0 chr12 34047029 34047123 -87210407 + B1_Mur2 SINE Alu 44 137 -12 1 844 258 32 0 0 chr12 34047126 34047157 -87210373 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 844 694 181 23 30 chr12 34047192 34047323 -87210207 + B3 SINE B2 1 130 -86 1 844 195 274 69 35 chr12 34049745 34049832 -87207698 + L3 LINE CR1 934 1023 -3466 1 844 210 225 0 0 chr12 34050322 34050362 -87207168 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 1 844 471 255 20 0 chr12 34050819 34050917 -87206613 + PB1D10 SINE Alu 16 115 -2 1 844 250 261 61 71 chr12 34052239 34052338 -87205192 - LTR50 LTR ERVL -582 213 116 1 844 314 310 0 57 chr12 34052931 34053054 -87204476 - MIRb SINE MIR -36 232 117 1 844 182 301 72 72 chr12 34053021 34053132 -87204398 + MIRc SINE MIR 75 185 -83 1 844 473 247 52 81 chr12 34053705 34053729 -87203801 + CYRA11_Mm Unknown Y-chromosome 153 170 -447 1 844 1271 136 50 18 chr12 34053729 34053947 -87203583 - URR1A DNA MER1_type -1 225 1 1 844 305 293 49 49 chr12 34054422 34054544 -87202986 - MIRc SINE MIR -120 148 27 1 844 553 254 20 51 chr12 34054833 34054988 -87202542 + ID_B1 SINE B4 66 214 -78 1 844 279 111 22 0 chr12 34054989 34055034 -87202496 + U2 snRNA snRNA 1 46 -142 1 844 341 285 90 68 chr12 34056057 34056234 -87201296 + MIR SINE MIR 77 257 -5 1 844 216 283 29 29 chr12 34056993 34057095 -87200435 - MIRb SINE MIR -1 267 166 1 844 1645 37 0 0 chr12 34057276 34057466 -87200064 + B2_Mm1t SINE B2 1 190 -3 1 844 500 176 0 10 chr12 34057897 34058000 -87199530 + CT-rich Low_complexity Low_complexity 3 104 0 1 844 25 0 0 0 chr12 34058072 34058097 -87199433 + AT_rich Low_complexity Low_complexity 1 25 0 1 844 33 25 0 0 chr12 34059856 34059896 -87197634 + AT_rich Low_complexity Low_complexity 1 40 0 1 844 189 74 0 0 chr12 34061196 34061223 -87196307 + (T)n Simple_repeat Simple_repeat 1 27 0 1 844 22 56 0 0 chr12 34061237 34061273 -87196257 + AT_rich Low_complexity Low_complexity 1 36 0 1 844 686 162 6 0 chr12 34061667 34061846 -87195684 + GA-rich Low_complexity Low_complexity 1 180 0 1 844 198 0 0 0 chr12 34061844 34061866 -87195664 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 1 844 234 0 0 0 chr12 34062028 34062054 -87195476 + (A)n Simple_repeat Simple_repeat 1 26 0 1 844 383 257 38 38 chr12 34062383 34062488 -87195042 - ID_B1 SINE B4 -34 190 86 1 844 1049 243 7 32 chr12 34063057 34063334 -87194196 + B4A SINE B4 1 270 -22 1 844 315 0 0 0 chr12 34063335 34063370 -87194160 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 844 387 92 0 0 chr12 34063370 34063435 -87194095 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 844 848 150 14 0 chr12 34063666 34063806 -87193724 - B1_Mur4 SINE Alu 0 150 9 1 844 533 275 14 21 chr12 34064062 34064207 -87193323 - RSINE1 SINE B4 -19 146 3 1 844 775 198 64 25 chr12 34065049 34065251 -87192279 + B3 SINE B2 1 210 -6 1 844 428 259 0 0 chr12 34066218 34066299 -87191231 - ID_B1 SINE B4 -118 106 26 1 844 445 218 35 0 chr12 34066343 34066430 -87191100 - RSINE1 SINE B4 -41 124 35 1 844 362 247 0 0 chr12 34067479 34067560 -87189970 - ID4_ SINE ID -2 81 1 1 844 382 252 134 13 chr12 34067871 34068020 -87189510 + L1ME3A LINE L1 5970 6136 -37 1 844 364 139 13 65 chr12 34068093 34068170 -87189360 + HAL1-3A_ME LINE L1 1977 2049 -809 1 844 183 42 0 0 chr12 34068208 34068232 -87189298 + (GGGAGA)n Simple_repeat Simple_repeat 1 24 0 1 844 366 85 0 0 chr12 34068234 34068293 -87189237 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 844 234 0 0 0 chr12 34068379 34068405 -87189125 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 1 844 455 289 8 8 chr12 34068748 34068870 -87188660 + ID_B1 SINE B4 90 211 -13 1 844 222 208 0 0 chr12 34069194 34069247 -87188283 + A-rich Low_complexity Low_complexity 1 53 0 1 844 407 288 163 14 chr12 34069252 34069393 -87188137 + RSINE1 SINE B4 2 163 -2 1 844 213 139 0 0 chr12 34069607 34069650 -87187880 + (A)n Simple_repeat Simple_repeat 1 43 0 1 844 198 0 0 0 chr12 34069658 34069680 -87187850 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1 844 253 289 60 0 chr12 34070097 34070180 -87187350 + PB1D10 SINE Alu 1 88 -29 1 844 585 296 12 6 chr12 34070181 34070354 -87187176 + ID_B1 SINE B4 33 206 -18 1 844 396 0 0 0 chr12 34070360 34070404 -87187126 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 844 582 15 0 0 chr12 34070724 34070791 -87186739 + (CATAC)n Simple_repeat Simple_repeat 1 67 0 1 844 4313 96 41 8 chr12 34070800 34070867 -87186663 - Lx2A1 LINE L1 -5 7003 6942 1 844 396 0 0 0 chr12 34070867 34070911 -87186619 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 844 4313 96 41 8 chr12 34070911 34071472 -87186058 - Lx2A1 LINE L1 -67 6941 6355 1 844 227 250 0 105 chr12 34071577 34071653 -87185877 + B1F2 SINE Alu 2 69 -80 1 844 217 139 186 0 chr12 34071667 34071710 -87185820 - ID4 SINE ID -25 58 8 1 844 998 208 50 0 chr12 34071745 34071947 -87185583 - B3 SINE B2 -4 212 1 1 844 528 230 18 0 chr12 34072719 34072832 -87184698 - ID_B1 SINE B4 -6 218 104 1 844 265 312 91 30 chr12 34072832 34072851 -87184679 - B1_Mur4 SINE Alu -6 144 5 1 844 213 229 21 0 chr12 34072864 34072912 -87184618 + CT-rich Low_complexity Low_complexity 2 50 0 1 844 482 288 70 29 chr12 34072936 34073108 -87184422 - B3A SINE B2 -16 182 4 1 844 853 276 83 33 chr12 34073161 34073527 -87184003 + L1ME2 LINE L1 5630 6000 -179 1 844 378 333 67 52 chr12 34074268 34074461 -87183069 - B3A SINE B2 0 198 3 1 844 374 274 92 87 chr12 34074464 34074660 -87182870 - B4 SINE B4 -63 229 33 1 844 1926 186 6 15 chr12 34074671 34075004 -87182526 - RodERV21-int LTR ERV1 -757 4234 3905 1 844 5044 192 26 36 chr12 34075195 34076212 -87181318 - RodERV21-int LTR ERV1 -2983 2008 1003 1 844 849 263 189 73 chr12 34076231 34076851 -87180679 - RLTR42-int LTR ERVK -3728 1794 1103 1 844 1549 204 47 3 chr12 34077147 34077467 -87180063 - RodERV21-int LTR ERV1 -3995 996 663 1 844 2511 202 12 8 chr12 34077467 34077981 -87179549 + RMER20A LTR ERVK 1 516 0 1 844 629 188 46 75 chr12 34077983 34078156 -87179374 - RodERV21-int LTR ERV1 -4325 666 499 1 844 431 141 13 0 chr12 34078156 34078234 -87179296 + CT-rich Low_complexity Low_complexity 2 80 0 1 844 756 140 224 17 chr12 34078267 34078441 -87179089 - RodERV21-int LTR ERV1 -4508 483 274 1 844 753 188 59 0 chr12 34078450 34078620 -87178910 + RCHARR1 DNA MER1_type 282 461 -513 1 845 1135 226 25 44 chr12 34078936 34079255 -87178275 + RCHARR1 DNA MER1_type 491 803 -171 1 845 397 272 71 29 chr12 34079293 34079433 -87178097 - ID_B1 SINE B4 0 224 79 1 845 240 35 0 0 chr12 34080863 34080892 -87176638 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 845 24 53 0 0 chr12 34080927 34080965 -87176565 + AT_rich Low_complexity Low_complexity 1 38 0 1 845 515 235 107 91 chr12 34080977 34081164 -87176366 - B3 SINE B2 -14 202 13 1 845 1574 33 0 32 chr12 34081168 34081358 -87176172 - B2_Mm1a SINE B2 -7 186 3 1 845 541 224 48 30 chr12 34081469 34081778 -87175752 + MTE2b LTR MaLR 13 379 0 1 845 1063 110 0 0 chr12 34081831 34081977 -87175553 + B1_Mus1 SINE Alu 1 146 -2 1 845 228 135 0 0 chr12 34081983 34082020 -87175510 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 845 581 259 22 61 chr12 34082111 34082292 -87175238 - B3A SINE B2 0 198 25 1 845 628 225 0 22 chr12 34082786 34082968 -87174562 + (TATG)n Simple_repeat Simple_repeat 3 180 0 1 845 338 130 143 0 chr12 34083002 34083079 -87174451 - B1_Mus2 SINE Alu -1 146 59 1 845 387 0 0 0 chr12 34083582 34083625 -87173905 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 845 457 278 126 46 chr12 34083629 34083867 -87173663 - B4 SINE B4 -26 266 10 1 845 634 220 7 28 chr12 34084025 34084170 -87173360 + B1_Mur2 SINE Alu 5 146 -3 1 845 234 0 0 0 chr12 34084170 34084196 -87173334 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 845 283 169 15 15 chr12 34084515 34084581 -87172949 + PB1D10 SINE Alu 40 105 -12 1 845 822 140 204 11 chr12 34084700 34084881 -87172649 - B3 SINE B2 0 216 1 1 845 306 0 0 0 chr12 34084949 34084983 -87172547 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 845 271 5 0 14 chr12 34085245 34085293 -87172237 - L1_Mus2 LINE L1 -1 6565 6529 1 845 678 252 195 0 chr12 34085293 34085503 -87172027 + B4 SINE B4 24 274 -18 1 845 234 0 0 0 chr12 34085507 34085533 -87171997 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 845 225 94 0 0 chr12 34085664 34085696 -87171834 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 845 473 240 0 0 chr12 34085727 34085827 -87171703 - B1F1 SINE Alu -47 102 3 1 845 574 200 43 0 chr12 34086772 34086887 -87170643 + B1F2 SINE Alu 30 149 0 1 845 525 278 17 0 chr12 34086905 34087020 -87170510 + RSINE1 SINE B4 4 120 -45 1 845 432 0 0 0 chr12 34087025 34087073 -87170457 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 845 533 207 0 26 chr12 34087174 34087288 -87170242 + ID_B1 SINE B4 114 224 0 1 845 218 95 24 0 chr12 34087288 34087330 -87170200 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 1 845 28 29 0 0 chr12 34087782 34087817 -87169713 + AT_rich Low_complexity Low_complexity 1 35 0 1 845 888 211 0 33 chr12 34087823 34088004 -87169526 - B3 SINE B2 -36 180 6 1 845 1228 41 7 0 chr12 34088739 34088886 -87168644 - B1_Mus1 SINE Alu 0 148 1 1 845 355 262 25 0 chr12 34089741 34089821 -87167709 + RSINE1 SINE B4 2 83 -82 1 845 180 0 0 0 chr12 34089842 34089862 -87167668 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 845 441 0 0 0 chr12 34089862 34089910 -87167620 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 845 524 306 68 62 chr12 34089921 34090482 -87167048 - L1MB8 LINE L1 -60 6118 5555 2 845 332 263 104 9 chr12 34090585 34090700 -87166830 - B1F SINE Alu 0 149 24 2 845 225 364 18 26 chr12 34090713 34090826 -87166704 - B1F SINE Alu -24 125 14 2 845 1515 127 135 0 chr12 34091007 34091267 -87166263 - Lx4A LINE L1 0 7058 6764 2 845 241 196 0 56 chr12 34091408 34091462 -87166068 + MLT1K LTR MaLR 537 587 -8 2 845 4700 103 31 27 chr12 34091654 34092433 -87165097 - RLTR13C2 LTR ERVK -26 782 1 2 845 243 186 106 53 chr12 34092633 34092803 -87164727 + (CAGTC)n Simple_repeat Simple_repeat 2 180 0 2 845 259 177 85 68 chr12 34093093 34093269 -87164261 + (CAGTC)n Simple_repeat Simple_repeat 2 180 0 2 845 243 186 106 53 chr12 34093484 34093654 -87163876 + (CAGTC)n Simple_repeat Simple_repeat 2 180 0 2 845 225 177 85 68 chr12 34093944 34094120 -87163410 + (CAGTC)n Simple_repeat Simple_repeat 2 180 0 2 845 255 131 0 125 chr12 34094331 34094523 -87163007 + (CAAGT)n Simple_repeat Simple_repeat 3 170 0 2 845 330 117 0 125 chr12 34094538 34094945 -87162585 + (CAAGT)n Simple_repeat Simple_repeat 1 356 0 2 845 236 164 92 62 chr12 34094883 34095013 -87162517 + (CAGTC)n Simple_repeat Simple_repeat 2 135 0 2 845 257 219 82 0 chr12 34095410 34095483 -87162047 - ID_B1 SINE B4 -110 114 36 2 845 239 160 40 0 chr12 34095681 34095731 -87161799 + ORR1C2 LTR MaLR 45 96 -288 2 845 453 19 0 0 chr12 34095735 34095789 -87161741 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 845 995 152 45 10 chr12 34095792 34095991 -87161539 + ORR1C2 LTR MaLR 177 382 -2 2 845 320 270 14 0 chr12 34096063 34096137 -87161393 - B1F1 SINE Alu -66 83 9 2 845 189 0 0 0 chr12 34096515 34096536 -87160994 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2 845 569 243 81 76 chr12 34101427 34101663 -87155867 + RLTR20D LTR ERVK 6 242 -326 2 845 296 237 131 20 chr12 34101699 34101726 -87155804 + RLTR20D LTR ERVK 452 490 -88 2 845 405 0 0 0 chr12 34101726 34101771 -87155759 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 845 296 245 108 21 chr12 34101771 34101861 -87155669 + RLTR20D LTR ERVK 479 568 0 2 845 6267 105 13 52 chr12 34103040 34104238 -87153292 + L1_Mus1 LINE L1 5428 6654 0 2 845 2275 116 107 5 chr12 34104244 34104627 -87152903 + Lx3C LINE L1 5740 6161 -815 2 845 3589 148 32 18 chr12 34104625 34105243 -87152287 + Lx3C LINE L1 6299 6925 -51 2 845 384 152 0 0 chr12 34105267 34105333 -87152197 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2 845 12630 152 45 43 chr12 34105465 34106034 -87151496 - L1_Mur3 LINE L1 -2032 3848 3263 2 845 1178 56 0 0 chr12 34106034 34106176 -87151354 - B1_Mus1 SINE Alu -5 143 2 2 845 12630 182 49 44 chr12 34106176 34109521 -87148009 - L1_Mur3 LINE L1 -2618 3262 17 2 845 8711 149 112 46 chr12 34111660 34111681 -87145849 - RLTR14-int LTR ERV1 -1751 3566 3539 2 845 327 25 0 0 chr12 34111681 34111721 -87145809 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 845 8711 149 112 46 chr12 34111721 34113396 -87144134 - RLTR14-int LTR ERV1 -1779 3538 1759 2 845 339 208 42 0 chr12 34113396 34113468 -87144062 + Lx9 LINE L1 7085 7159 -485 2 845 726 221 0 39 chr12 34113872 34114027 -87143503 + B1_Mur1 SINE Alu 1 149 0 2 845 261 0 0 0 chr12 34114046 34114075 -87143455 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 845 198 0 0 0 chr12 34114133 34114155 -87143375 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 845 369 0 0 0 chr12 34115263 34115304 -87142226 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 845 27 0 0 0 chr12 34115993 34116020 -87141510 + AT_rich Low_complexity Low_complexity 1 27 0 2 845 357 322 111 60 chr12 34116768 34117121 -87140409 - MER20B DNA MER1_type -199 584 214 2 845 461 237 92 26 chr12 34118584 34118779 -87138751 - L1MA5 LINE L1 -304 5996 5789 2 845 487 229 264 79 chr12 34119035 34119350 -87138180 - MTEa LTR MaLR -6 373 1 2 845 279 194 194 37 chr12 34119356 34119490 -87138040 - L1MA5 LINE L1 -744 5440 5277 2 845 769 199 158 6 chr12 34119750 34119927 -87137603 - B3 SINE B2 -11 205 2 2 845 313 285 103 103 chr12 34119948 34120210 -87137320 - L1MDa LINE L1 -4554 2079 1818 2 845 311 331 51 32 chr12 34120371 34120527 -87137003 - L1MDa LINE L1 -4988 1645 1487 2 845 691 245 184 14 chr12 34120645 34120939 -87136591 - Lx8 LINE L1 -28 7445 7102 2 845 576 214 151 0 chr12 34120941 34121067 -87136463 - RMER15 LTR ERVL -2 573 429 2 845 21 0 0 0 chr12 34121596 34121617 -87135913 + AT_rich Low_complexity Low_complexity 1 21 0 2 845 186 43 0 0 chr12 34122786 34122809 -87134721 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2 845 255 233 44 0 chr12 34124282 34124372 -87133158 - Lx5 LINE L1 -945 6105 6012 2 845 3172 156 27 1 chr12 34124369 34125076 -87132454 + Lx5 LINE L1 5279 6013 -1037 2 845 431 308 157 42 chr12 34125580 34125797 -87131733 + MLT1E3 LTR MaLR 166 407 -217 2 845 735 274 89 22 chr12 34125926 34126195 -87131335 - B4A SINE B4 -4 288 2 2 845 818 300 161 24 chr12 34126864 34127610 -87129920 + L1_Mur3 LINE L1 1480 2353 -3494 2 845 3099 137 31 12 chr12 34127652 34128170 -87129360 - L1_Mur2 LINE L1 -1546 4331 3804 2 845 8038 53 2 2 chr12 34128175 34129633 -87127897 - L1Md_F3 LINE L1 -14 6570 5112 2 845 2798 155 30 10 chr12 34129633 34130142 -87127388 - L1_Mur2 LINE L1 -2062 3815 3297 2 845 755 223 57 5 chr12 34130829 34131023 -87126507 + Lx7 LINE L1 4856 5059 -821 2 845 885 146 0 0 chr12 34131028 34131179 -87126351 + (TC)n Simple_repeat Simple_repeat 2 152 0 2 845 225 273 72 67 chr12 34131180 34131194 -87126336 - L1_Mur3 LINE L1 -802 5489 5476 2 845 1558 58 37 0 chr12 34131194 34131382 -87126148 - B2_Mm2 SINE B2 0 195 1 2 845 548 262 45 85 chr12 34131382 34131564 -87125966 - L1_Mur3 LINE L1 -816 5475 5260 2 845 1277 35 14 0 chr12 34131564 34131709 -87125821 - B1_Mm SINE Alu 0 147 1 2 845 548 262 41 83 chr12 34131709 34131920 -87125610 - L1_Mur3 LINE L1 -621 5259 5071 2 845 285 266 160 21 chr12 34131960 34132110 -87125420 + Lx7 LINE L1 6044 6205 -1268 2 845 583 179 176 16 chr12 34133081 34133206 -87124324 - URR1A DNA MER1_type -81 145 1 2 845 229 0 83 0 chr12 34133312 34133348 -87124182 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 845 820 83 0 0 chr12 34133348 34133457 -87124073 - B1_Mm SINE Alu -10 137 29 2 845 457 198 0 28 chr12 34134117 34134226 -87123304 - RMER1A Other Other -6 1024 919 2 845 1589 268 181 53 chr12 34134226 34134797 -87122733 - RMER1A Other Other -284 746 85 2 845 6257 122 47 10 chr12 34134797 34135718 -87121812 + RMER17B LTR ERVK 1 955 -3 2 845 1589 259 26 20 chr12 34135718 34136088 -87121442 - RMER1A Other Other -584 446 1 2 845 2051 166 80 20 chr12 34136088 34136488 -87121042 + RLTR20B1 LTR ERVK 1 424 -139 2 845 267 31 0 0 chr12 34136489 34136521 -87121009 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 845 411 232 12 24 chr12 34136522 34136606 -87120924 + RLTR20B1 LTR ERVK 481 563 0 2 845 1075 284 136 22 chr12 34136615 34137026 -87120504 - RMER1A Other Other -558 472 15 2 845 948 205 228 29 chr12 34137007 34137318 -87120212 - RMER1B Other Other -648 418 46 2 845 402 306 61 80 chr12 34137933 34138196 -87119334 + ORR1E LTR MaLR 96 353 -6 2 845 25 31 0 0 chr12 34138257 34138289 -87119241 + AT_rich Low_complexity Low_complexity 1 32 0 2 845 287 263 21 157 chr12 34138601 34138741 -87118789 + PB1 SINE Alu 5 125 -2 2 845 349 263 0 50 chr12 34138761 34138841 -87118689 + ID4_ SINE ID 4 79 -4 2 845 275 306 98 16 chr12 34139145 34139268 -87118262 + LTR16B2 LTR ERVL 8 140 -322 2 845 291 347 161 36 chr12 34139305 34139529 -87118001 + LTR16B2 LTR ERVL 211 462 0 2 845 351 0 0 0 chr12 34140968 34141007 -87116523 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 845 204 135 0 0 chr12 34141012 34141049 -87116481 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 845 1026 101 0 0 chr12 34141643 34141792 -87115738 + (TTCC)n Simple_repeat Simple_repeat 4 152 0 2 845 315 71 0 0 chr12 34141792 34141834 -87115696 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 845 191 355 138 31 chr12 34142413 34142637 -87114893 - L2a LINE L2 0 3426 3179 2 845 2693 23 68 3 chr12 34142999 34143306 -87114224 - IAPLTR2b LTR ERVK 0 327 1 2 845 25 0 0 0 chr12 34143313 34143338 -87114192 + AT_rich Low_complexity Low_complexity 1 25 0 2 845 2419 149 48 15 chr12 34143758 34144152 -87113378 - MTB_Mm LTR MaLR 0 407 1 2 845 1958 134 97 6 chr12 34145070 34145399 -87112131 + ORR1B2 LTR MaLR 1 359 -8 2 845 548 95 12 0 chr12 34145516 34145600 -87111930 + (GAA)n Simple_repeat Simple_repeat 2 86 0 2 845 230 257 135 54 chr12 34146352 34146426 -87111104 + B4A SINE B4 203 282 -10 2 845 450 0 0 0 chr12 34146444 34146494 -87111036 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 845 35860 55 1 2 chr12 34146528 34151550 -87105980 + L1Md_F2 LINE L1 614 5586 -297 2 845 8597 51 1 3 chr12 34151551 34152547 -87104983 + L1Md_F2 LINE L1 5588 6581 -1 2 845 5927 24 6 3 chr12 34152547 34153228 -87104302 + L1Md_F3 LINE L1 5870 6552 -32 2 845 281 26 0 26 chr12 34153228 34153267 -87104263 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 845 204 40 0 0 chr12 34153812 34153837 -87103693 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 2 845 1235 62 7 0 chr12 34153846 34153992 -87103538 - B1_Mus2 SINE Alu 0 147 1 2 845 198 0 0 0 chr12 34154042 34154064 -87103466 + (T)n Simple_repeat Simple_repeat 1 22 0 2 845 1036 206 69 54 chr12 34154637 34154914 -87102616 + RLTR20B3 LTR ERVK 1 281 -296 2 845 1113 229 71 43 chr12 34154923 34155275 -87102255 + RLTR20B3 LTR ERVK 188 549 -28 2 845 401 21 0 0 chr12 34155469 34155516 -87102014 - ORR1C2 LTR MaLR -2 382 336 2 845 316 295 124 9 chr12 34155526 34155639 -87101891 - Lx8 LINE L1 -183 7290 7165 2 845 1383 320 28 42 chr12 34155630 34156243 -87101287 - Lx5 LINE L1 -612 6438 5835 2 845 823 201 3 22 chr12 34156236 34156423 -87101107 + L1MA9 LINE L1 5727 5946 -366 2 845 268 331 154 40 chr12 34156525 34156824 -87100706 - MTE-int LTR MaLR -378 1202 870 2 845 348 200 0 16 chr12 34157027 34157088 -87100442 - 4.5SRNA scRNA scRNA -31 63 4 2 845 453 66 0 0 chr12 34157202 34157263 -87100267 + (CAAAA)n Simple_repeat Simple_repeat 4 64 0 2 845 600 279 115 46 chr12 34158094 34158900 -87098630 - L1MEe LINE L1 -2423 3723 2862 2 845 627 300 55 45 chr12 34158943 34159185 -87098345 - L1MEe LINE L1 -3684 2462 2218 2 845 1256 27 0 52 chr12 34159185 34159197 -87098333 - B1_Mus2 SINE Alu 0 147 139 2 845 246 32 0 0 chr12 34159197 34159228 -87098302 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 845 1256 27 0 52 chr12 34159228 34159370 -87098160 - B1_Mus2 SINE Alu -9 138 1 2 845 627 311 55 55 chr12 34159370 34159458 -87098072 - L1MEe LINE L1 -3939 2227 2151 2 845 1151 234 76 7 chr12 34159550 34159809 -87097721 + Lx7 LINE L1 6864 7143 -553 2 845 564 15 0 0 chr12 34159809 34159874 -87097656 + (GGA)n Simple_repeat Simple_repeat 2 66 0 2 845 1151 234 76 7 chr12 34159874 34159915 -87097615 + Lx7 LINE L1 7144 7184 -512 2 845 5270 55 5 2 chr12 34159917 34160541 -87096989 + L1Md_F2 LINE L1 5957 6582 0 2 845 258 186 0 0 chr12 34160889 34160948 -87096582 - Lx5 LINE L1 0 7050 6992 2 845 887 166 21 43 chr12 34160931 34161117 -87096413 - Lx5 LINE L1 -450 6600 6439 2 845 715 156 18 0 chr12 34161133 34161242 -87096288 - Lx5 LINE L1 -754 6296 6186 2 845 23 68 0 0 chr12 34161786 34161830 -87095700 + AT_rich Low_complexity Low_complexity 1 44 0 3 845 405 0 0 0 chr12 34161868 34161913 -87095617 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 845 501 17 0 0 chr12 34161913 34161970 -87095560 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 845 1182 239 70 36 chr12 34162191 34162521 -87095009 - MTE2b LTR MaLR 0 379 39 3 845 652 189 14 0 chr12 34163518 34163666 -87093864 + CT-rich Low_complexity Low_complexity 3 152 0 3 845 22 35 0 0 chr12 34163895 34163924 -87093606 + AT_rich Low_complexity Low_complexity 1 29 0 3 845 2457 261 57 35 chr12 34163939 34164776 -87092754 + Lx9 LINE L1 6715 7570 -74 3 845 29 28 0 0 chr12 34164817 34164853 -87092677 + AT_rich Low_complexity Low_complexity 1 36 0 3 845 701 315 80 7 chr12 34164924 34165199 -87092331 + MTE2b LTR MaLR 82 376 -3 3 845 2441 55 10 10 chr12 34165376 34165686 -87091844 - L1_Mus3 LINE L1 0 6638 6329 3 845 21 0 0 0 chr12 34165888 34165909 -87091621 + AT_rich Low_complexity Low_complexity 1 21 0 3 845 222 37 0 0 chr12 34166463 34166490 -87091040 + (TCC)n Simple_repeat Simple_repeat 2 28 0 3 845 657 171 116 0 chr12 34166524 34166653 -87090877 - B3 SINE B2 -1 215 72 3 845 29 47 0 0 chr12 34167244 34167287 -87090243 + AT_rich Low_complexity Low_complexity 1 43 0 3 845 435 195 11 11 chr12 34167373 34167461 -87090069 - B3 SINE B2 -128 88 1 3 845 706 262 93 41 chr12 34167516 34167933 -87089597 - L1MB5 LINE L1 -8 6166 5728 3 845 1966 135 109 23 chr12 34167933 34168281 -87089249 + ORR1C1 LTR MaLR 1 378 0 3 845 251 306 121 38 chr12 34168383 34168672 -87088858 - L1MB5 LINE L1 -574 5600 5288 3 845 381 280 60 151 chr12 34168703 34168805 -87088725 - L1MB5 LINE L1 -897 5249 5161 3 845 622 225 14 7 chr12 34168805 34168944 -87088586 - B1_Mur1 SINE Alu -8 141 2 3 845 381 280 60 151 chr12 34168944 34169106 -87088424 - L1MB5 LINE L1 -986 5160 5009 3 845 1039 149 114 47 chr12 34169214 34169425 -87088105 + URR1A DNA MER1_type 2 226 0 3 845 1812 189 34 72 chr12 34169581 34169998 -87087532 + MTD LTR MaLR 1 401 -18 3 845 411 303 50 14 chr12 34170084 34170305 -87087225 - L1MC2 LINE L1 -107 6237 6009 3 845 653 322 85 44 chr12 34170305 34170669 -87086861 - MTEb LTR MaLR 0 379 1 3 845 22 0 0 0 chr12 34170880 34170902 -87086628 + AT_rich Low_complexity Low_complexity 1 22 0 3 845 29 28 0 0 chr12 34170970 34171006 -87086524 + AT_rich Low_complexity Low_complexity 1 36 0 3 845 264 321 76 8 chr12 34171330 34171462 -87086068 - L1MC2 LINE L1 -902 5244 5104 3 845 2570 46 34 0 chr12 34171472 34171799 -87085731 - ORR1A1 LTR MaLR -8 338 1 3 845 902 259 169 28 chr12 34171883 34172527 -87085003 - L1MC2 LINE L1 -1307 4839 4105 3 845 14148 82 34 9 chr12 34172529 34174730 -87082800 + L1VL4 LINE L1 540 2794 -765 3 845 270 0 0 0 chr12 34174730 34174760 -87082770 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3 845 14148 80 29 9 chr12 34174760 34175083 -87082447 + L1VL4 LINE L1 2795 3124 -435 3 845 2594 31 9 0 chr12 34175081 34175403 -87082127 - L1Md_F2 LINE L1 -324 6258 5934 3 845 3293 33 28 0 chr12 34175403 34175798 -87081732 + L1Md_F2 LINE L1 6175 6580 -2 3 845 26449 49 3 1 chr12 34175798 34179293 -87078237 + L1Md_F3 LINE L1 2082 5586 -297 3 845 7980 33 9 47 chr12 34179293 34179736 -87077794 + L1Md_F3 LINE L1 5587 6002 -582 3 845 1131 68 0 7 chr12 34179736 34179884 -87077646 - B1_Mm SINE Alu 0 147 1 3 845 7980 33 9 47 chr12 34179884 34180470 -87077060 + L1Md_F3 LINE L1 6003 6577 -7 3 845 24 53 0 0 chr12 34182062 34182100 -87075430 + AT_rich Low_complexity Low_complexity 1 38 0 3 845 208 322 17 17 chr12 34182512 34182572 -87074958 + L2b LINE L2 3280 3339 -36 3 845 181 295 0 76 chr12 34184112 34184178 -87073352 - MER5A DNA MER1_type -70 119 59 3 845 1011 58 0 0 chr12 34184966 34185105 -87072425 + (GA)n Simple_repeat Simple_repeat 1 139 0 3 845 951 335 60 13 chr12 34185178 34185641 -87071889 - RMER15-int LTR ERVL -360 4639 4155 3 845 2200 254 50 28 chr12 34185820 34186296 -87071234 + L1_Mur3 LINE L1 583 1052 -6676 3 845 4208 47 4 6 chr12 34186296 34186827 -87070703 - L1Md_F3 LINE L1 0 6584 6055 3 845 2200 254 50 28 chr12 34186827 34187091 -87070439 + L1_Mur3 LINE L1 1053 1339 -6389 3 845 534 231 9 9 chr12 34187091 34187196 -87070334 + RMER19B LTR ERVK 131 235 -667 3 845 6591 70 16 9 chr12 34187213 34188129 -87069401 - L1_Mus1 LINE L1 0 6567 5645 3 845 32552 20 3 0 chr12 34188127 34192788 -87064742 - L1Md_A LINE L1 0 6582 1908 3 845 1413 97 0 0 chr12 34192786 34192981 -87064549 - L1_Mm LINE L1 -223 5660 5466 3 845 225 121 0 0 chr12 34192982 34193015 -87064515 - L1_Mus1 LINE L1 -908 5658 5626 3 845 3594 151 55 30 chr12 34193027 34193667 -87063863 + RMER19B LTR ERVK 231 886 -16 3 845 3249 53 2 9 chr12 34193720 34194140 -87063390 + L1_Mus1 LINE L1 6151 6567 0 3 845 1100 166 0 41 chr12 34194178 34194398 -87063132 + L1_Mur3 LINE L1 2655 2865 -3015 3 845 1651 302 128 7 chr12 34194401 34195279 -87062251 + L1_Mur3 LINE L1 35 1018 -6694 3 845 285 29 0 0 chr12 34195293 34195327 -87062203 + (T)n Simple_repeat Simple_repeat 1 34 0 3 845 12427 144 19 78 chr12 34195573 34197620 -87059910 - L1_Mur2 LINE L1 -948 4929 2883 3 845 405 0 0 0 chr12 34197620 34197665 -87059865 + (TTTC)n Simple_repeat Simple_repeat 1 45 0 3 845 12427 144 19 78 chr12 34197665 34198310 -87059220 - L1_Mur2 LINE L1 -2995 2882 2396 3 845 2294 57 0 29 chr12 34198311 34198646 -87058884 - L1_Mus1 LINE L1 0 6567 6260 3 845 244 164 18 0 chr12 34198648 34198703 -87058827 - L1_Mur2 LINE L1 -2387 3490 3435 3 845 1013 103 6 44 chr12 34198703 34198886 -87058644 + L1_Mur1 LINE L1 4651 4826 -1060 3 845 1687 75 8 16 chr12 34198885 34199130 -87058400 + L1_Mus4 LINE L1 5835 6077 -559 3 845 682 316 86 33 chr12 34199337 34199828 -87057702 + MLT2B1 LTR ERVL 2 518 -2 3 845 3480 137 104 57 chr12 34199945 34200667 -87056863 - RMER6A LTR ERVK 0 756 1 3 845 298 317 107 48 chr12 34203483 34203755 -87053775 - B4A SINE B4 -4 288 1 3 845 505 297 40 0 chr12 34204186 34204334 -87053196 + RSINE1 SINE B4 2 155 -10 3 845 2929 68 0 8 chr12 34204882 34205353 -87052177 - L1Md_F2 LINE L1 0 6582 6185 3 845 36 0 0 0 chr12 34205456 34205492 -87052038 + AT_rich Low_complexity Low_complexity 1 36 0 3 845 3528 120 20 0 chr12 34205496 34206053 -87051477 - Lx2B LINE L1 -23 6977 6410 3 845 1137 123 0 0 chr12 34206517 34206696 -87050834 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 3 845 4792 165 52 23 chr12 34206720 34207596 -87049934 - Lx4A LINE L1 -12 7046 6145 3 845 3216 101 63 7 chr12 34207603 34208169 -87049361 + Lx4A LINE L1 5536 6136 -922 3 845 308 258 100 0 chr12 34209233 34209339 -87048191 + MIR SINE MIR 94 218 -50 3 845 198 0 0 0 chr12 34209478 34209500 -87048030 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 105 14415 82 44 4 chr12 34209507 34211754 -87045776 - L1VL4 LINE L1 -20 3539 1202 3 846 7797 85 3 0 chr12 34211770 34213617 -87043913 - L1_Mus1 LINE L1 0 6567 4716 3 846 6078 114 25 3 chr12 34213617 34214800 -87042730 - L1VL4 LINE L1 -2345 1214 1 3 846 3004 169 23 19 chr12 34215021 34215674 -87041856 - Lx5 LINE L1 -1388 5662 5003 3 846 190 305 0 58 chr12 34216520 34216607 -87040923 - L2 LINE L2 -826 2593 2512 3 846 22 0 0 0 chr12 34216734 34216756 -87040774 + AT_rich Low_complexity Low_complexity 1 22 0 3 846 669 301 39 17 chr12 34216940 34217173 -87040357 - MER2 DNA MER2_type -13 332 95 3 846 26 50 0 0 chr12 34217286 34217326 -87040204 + AT_rich Low_complexity Low_complexity 1 40 0 3 846 8543 78 7 5 chr12 34217342 34218271 -87039259 + L1Md_F2 LINE L1 4358 5287 -596 3 846 2474 70 6 3 chr12 34218271 34218603 -87038927 + L1Md_F2 LINE L1 6247 6579 -3 3 846 8543 78 7 5 chr12 34218603 34218900 -87038630 + L1Md_F2 LINE L1 5288 5585 -298 3 846 7636 66 7 3 chr12 34218900 34219891 -87037639 + L1Md_F2 LINE L1 5587 6581 -1 3 846 32 43 0 0 chr12 34219910 34219956 -87037574 + AT_rich Low_complexity Low_complexity 1 46 0 3 846 1168 107 0 17 chr12 34219956 34220128 -87037402 - B2_Mm2 SINE B2 -5 190 22 3 846 665 288 29 23 chr12 34220286 34220460 -87037070 - B3A SINE B2 -22 176 2 3 846 354 267 107 49 chr12 34220482 34220687 -87036843 + L1M4 LINE L1 5327 5543 -641 3 846 332 146 60 24 chr12 34220809 34220893 -87036637 - Lx8 LINE L1 -29 7444 7358 3 846 450 0 0 0 chr12 34220893 34220943 -87036587 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 846 3393 73 0 4 chr12 34220972 34221428 -87036102 - L1Md_F2 LINE L1 -218 6364 5911 3 846 1701 65 4 29 chr12 34221428 34221666 -87035864 + L1Md_F2 LINE L1 6350 6581 -1 3 846 531 292 122 10 chr12 34221672 34221869 -87035661 - Lx7 LINE L1 -374 7322 7104 3 846 2148 46 57 0 chr12 34221969 34222251 -87035279 - L1_Mus2 LINE L1 -288 6278 5981 3 846 2110 75 0 23 chr12 34222251 34222550 -87034980 + L1_Mus2 LINE L1 6275 6566 0 3 846 406 361 78 31 chr12 34222624 34222918 -87034612 - L1MC4 LINE L1 -1016 7026 6719 3 846 885 300 69 47 chr12 34223049 34223409 -87034121 - MLT2D LTR ERVL -34 380 13 3 846 566 130 0 0 chr12 34223739 34223831 -87033699 + Lx3_Mus LINE L1 6233 6324 -685 3 846 243 0 0 0 chr12 34224116 34224143 -87033387 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 3 846 243 0 0 0 chr12 34224396 34224423 -87033107 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 846 870 38 0 0 chr12 34225232 34225338 -87032192 + (TG)n Simple_repeat Simple_repeat 2 107 0 3 846 257 212 205 116 chr12 34225351 34225463 -87032067 - B2_Mm2 SINE B2 -71 124 3 3 846 1011 227 73 138 chr12 34225889 34226287 -87031243 - MTE2a LTR MaLR -2 377 6 3 846 290 301 71 79 chr12 34226634 34226988 -87030542 + L1MC3 LINE L1 6875 7225 -560 3 846 2744 56 0 0 chr12 34227072 34227409 -87030121 - L1_Mus1 LINE L1 -6 6561 6225 3 846 620 289 40 29 chr12 34227416 34227842 -87029688 + L1MC3 LINE L1 7380 7779 -6 3 846 791 332 7 7 chr12 34229839 34230124 -87027406 + B4A SINE B4 4 288 -4 3 846 227 386 0 11 chr12 34230388 34230477 -87027053 - MER58B DNA MER1_type -241 100 13 3 846 24 32 0 0 chr12 34230979 34231010 -87026520 + AT_rich Low_complexity Low_complexity 1 31 0 3 846 237 263 58 17 chr12 34231074 34231194 -87026336 + L1MC4a LINE L1 6861 6985 -897 3 846 196 295 74 61 chr12 34232093 34232241 -87025289 + MIRc SINE MIR 4 153 -115 3 846 727 258 45 35 chr12 34232603 34232804 -87024726 - B3 SINE B2 -7 209 7 3 846 302 286 85 123 chr12 34234363 34234762 -87022768 + RMER10A LTR ERVL 30 413 -29 3 846 414 0 0 0 chr12 34234951 34234997 -87022533 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 846 1148 71 0 0 chr12 34235001 34235141 -87022389 - B1_Mus2 SINE Alu -7 140 1 3 846 44 0 0 0 chr12 34235480 34235524 -87022006 + AT_rich Low_complexity Low_complexity 1 44 0 3 846 3313 66 0 2 chr12 34235649 34236072 -87021458 + L1_Mus1 LINE L1 6145 6566 -1 3 846 21 0 0 0 chr12 34236072 34236093 -87021437 + AT_rich Low_complexity Low_complexity 1 21 0 3 846 273 81 0 0 chr12 34236195 34236232 -87021298 + L1_Mus1 LINE L1 6145 6181 -386 4 846 1319 54 0 0 chr12 34236233 34236400 -87021130 + L1_Mus1 LINE L1 6401 6567 0 4 846 324 0 0 0 chr12 34236535 34236571 -87020959 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 846 2738 84 16 21 chr12 34236571 34236664 -87020866 - L1_Mus3 LINE L1 -33 6605 6517 4 846 1900 125 6 50 chr12 34236664 34237001 -87020529 + RLTRETN_Mm LTR ERVK 1 322 0 4 846 2738 84 16 21 chr12 34237001 34237330 -87020200 - L1_Mus3 LINE L1 -122 6516 6185 4 846 433 306 27 0 chr12 34239406 34239517 -87018013 + B4A SINE B4 177 290 -2 4 846 296 228 12 12 chr12 34239583 34239608 -87017922 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 4 846 396 0 0 0 chr12 34239608 34239652 -87017878 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 846 296 228 12 12 chr12 34239652 34239706 -87017824 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 4 846 632 202 30 23 chr12 34240216 34240348 -87017182 + B1F SINE Alu 14 146 -3 4 846 261 0 0 0 chr12 34240359 34240388 -87017142 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 846 1314 61 0 11 chr12 34240685 34240867 -87016663 - L1_Mus2 LINE L1 -2 6564 6385 4 846 4964 27 19 0 chr12 34242665 34243255 -87014275 - L1Md_F2 LINE L1 -19 6563 5963 4 846 539 232 140 6 chr12 34243268 34243446 -87014084 + RCHARR1 DNA MER1_type 772 973 -1 4 846 969 160 126 29 chr12 34243924 34244130 -87013400 - URR1A DNA MER1_type 0 226 1 4 846 3050 36 0 30 chr12 34244422 34244825 -87012705 - L1Md_F3 LINE L1 -606 5978 5588 4 846 419 206 5 17 chr12 34244956 34245117 -87012413 - L1MB8 LINE L1 -131 6048 5886 4 846 201 108 0 0 chr12 34245944 34245981 -87011549 + (A)n Simple_repeat Simple_repeat 1 37 0 4 846 1698 270 61 26 chr12 34246663 34247879 -87009651 - Lx6 LINE L1 -28 7432 5774 4 846 235 248 48 89 chr12 34247879 34248003 -87009527 - Zaphod DNA Tip100 -2185 1846 1728 4 846 16610 188 69 24 chr12 34248003 34252132 -87005398 - Lx6 LINE L1 -235 5645 1331 4 846 5149 65 1 0 chr12 34252146 34253146 -87004384 - L1_Mus1 LINE L1 -314 6253 5253 4 846 1125 242 3 7 chr12 34253142 34253433 -87004097 - Lx6 LINE L1 -6550 1178 889 4 846 402 57 0 0 chr12 34253918 34253971 -87003559 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 846 2560 136 7 19 chr12 34254005 34254417 -87003113 + Lx4A LINE L1 6649 7055 -3 4 846 21 71 0 0 chr12 34254561 34254603 -87002927 + AT_rich Low_complexity Low_complexity 1 42 0 4 846 265 87 22 0 chr12 34255015 34255061 -87002469 - MT2A LTR ERVL -5 528 482 4 846 840 298 136 25 chr12 34255085 34255567 -87001963 + Lx8 LINE L1 6805 7332 -141 4 846 216 0 0 0 chr12 34255567 34255591 -87001939 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 4 846 840 298 136 25 chr12 34255591 34255710 -87001820 + Lx8 LINE L1 7333 7473 0 4 846 563 280 259 31 chr12 34255725 34256046 -87001484 - MT2A LTR ERVL -74 459 66 4 846 275 307 130 30 chr12 34255978 34256109 -87001421 - MTD LTR MaLR -258 161 18 4 846 432 0 0 0 chr12 34256661 34256709 -87000821 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 846 245 238 133 47 chr12 34259105 34259233 -86998297 - LTRIS4 LTR ERV1 -50 457 319 4 846 457 369 79 48 chr12 34259726 34260042 -86997488 + MLT1A LTR MaLR 43 368 -6 4 846 3464 149 79 12 chr12 34260188 34260835 -86996695 + RMER6C LTR ERVK 1 690 0 4 846 22 56 0 0 chr12 34261112 34261148 -86996382 + AT_rich Low_complexity Low_complexity 1 36 0 4 846 390 313 83 54 chr12 34261377 34261654 -86995876 + B4A SINE B4 2 286 -6 4 846 333 0 0 0 chr12 34261669 34261706 -86995824 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 846 1218 61 0 0 chr12 34262024 34262171 -86995359 - B1_Mus2 SINE Alu 0 147 1 4 846 233 288 25 50 chr12 34262696 34262857 -86994673 + L1M6 LINE L1 1559 1715 -4781 4 846 25 0 0 0 chr12 34263963 34263988 -86993542 + AT_rich Low_complexity Low_complexity 1 25 0 4 846 206 358 56 24 chr12 34266642 34266768 -86990762 - L2c LINE L2 -1 3386 3257 4 846 231 36 0 0 chr12 34268235 34268263 -86989267 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 846 212 242 16 16 chr12 34268319 34268382 -86989148 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 846 194 271 136 34 chr12 34268839 34268927 -86988603 + L2a LINE L2 3322 3418 -8 4 846 314 239 0 11 chr12 34269277 34269370 -86988160 + CT-rich Low_complexity Low_complexity 2 93 0 4 846 3359 30 8 0 chr12 34269892 34270285 -86987245 + MTA_Mm LTR MaLR 1 396 0 4 846 1333 309 99 29 chr12 34270691 34271892 -86985638 + L1MA4 LINE L1 3891 5175 -968 4 846 1359 187 137 33 chr12 34272081 34272418 -86985112 + ORR1D1 LTR MaLR 1 372 -2 4 846 439 308 45 27 chr12 34272437 34272821 -86984709 + L1MA4 LINE L1 5239 5629 -668 4 846 435 321 70 10 chr12 34272960 34273259 -86984271 + L1MA4 LINE L1 5694 6010 -290 4 846 242 291 35 35 chr12 34273559 34273673 -86983857 - L1M7 LINE L1 -4566 1652 1539 4 846 290 241 0 0 chr12 34274054 34274108 -86983422 - PB1D10 SINE Alu -21 96 43 4 846 343 304 43 35 chr12 34274155 34274271 -86983259 - B1F SINE Alu -7 142 26 4 846 1566 284 82 51 chr12 34275687 34276617 -86980913 - L1MA7 LINE L1 -139 6152 5193 4 846 470 254 65 60 chr12 34278783 34278967 -86978563 + B3A SINE B2 2 186 -12 4 846 252 0 0 0 chr12 34279348 34279376 -86978154 + (T)n Simple_repeat Simple_repeat 1 28 0 4 846 1135 68 0 33 chr12 34279376 34279527 -86978003 - B1_Mm SINE Alu 0 147 2 4 846 602 60 0 12 chr12 34280984 34281068 -86976462 + (TCTCCC)n Simple_repeat Simple_repeat 3 85 0 4 846 246 32 0 0 chr12 34281408 34281439 -86976091 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 846 552 268 52 28 chr12 34281731 34281981 -86975549 + L1M3 LINE L1 3912 4167 -1973 4 846 260 172 35 0 chr12 34281987 34282045 -86975485 + Lx8 LINE L1 6391 6450 -1023 4 846 338 162 0 29 chr12 34282083 34282153 -86975377 + Lx8 LINE L1 7048 7115 -358 4 846 21 0 0 0 chr12 34282158 34282179 -86975351 + AT_rich Low_complexity Low_complexity 1 21 0 4 846 741 285 138 97 chr12 34282228 34282769 -86974761 - RLTR18 LTR ERVK -3 613 43 4 846 2487 96 20 32 chr12 34282769 34283169 -86974361 + Lx2 LINE L1 6603 6997 0 4 846 512 281 102 87 chr12 34283169 34283217 -86974313 - RLTR18 LTR ERVK -464 48 12 4 846 244 312 43 0 chr12 34283358 34283496 -86974034 + L1M3 LINE L1 4247 4390 -1750 4 846 854 205 149 172 chr12 34283869 34284107 -86973423 + ORR1D1 LTR MaLR 1 189 -185 4 846 348 24 0 0 chr12 34284107 34284148 -86973382 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 846 854 205 149 172 chr12 34284148 34284292 -86973238 + ORR1D1 LTR MaLR 190 373 -1 4 846 1188 92 33 39 chr12 34284369 34284528 -86973002 + B2_Mm2 SINE B2 2 162 -33 4 846 276 30 0 0 chr12 34284528 34284561 -86972969 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 846 1188 92 33 39 chr12 34284561 34284582 -86972948 + B2_Mm2 SINE B2 163 181 -14 4 846 324 261 73 73 chr12 34284582 34284739 -86972791 + MER63D DNA AcHobo 150 327 -734 4 846 329 323 96 15 chr12 34285192 34285327 -86972203 + B1_Mur3 SINE Alu 2 147 -2 4 846 35 54 0 0 chr12 34285554 34285610 -86971920 + AT_rich Low_complexity Low_complexity 1 56 0 4 846 2201 61 68 3 chr12 34287322 34287618 -86969912 + L1Md_F2 LINE L1 6256 6570 -12 4 846 846 126 0 0 chr12 34288054 34288189 -86969341 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 846 2026 148 150 68 chr12 34288361 34288848 -86968682 + RLTR12B LTR ERVK 1 527 -1 4 846 243 125 0 0 chr12 34288892 34288932 -86968598 + (AAATG)n Simple_repeat Simple_repeat 4 43 0 4 846 427 330 29 50 chr12 34289207 34289476 -86968054 - MTEa LTR MaLR -15 364 90 4 846 6635 82 27 2 chr12 34289477 34290397 -86967133 + Lx3_Mus LINE L1 6059 7001 -8 4 846 295 325 24 0 chr12 34290426 34290509 -86967021 - MTEa LTR MaLR -262 97 13 4 846 2073 264 7 41 chr12 34290552 34291132 -86966398 + Lx6 LINE L1 6719 7278 -182 4 846 252 59 0 0 chr12 34291144 34291178 -86966352 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 4 846 634 303 105 94 chr12 34291880 34292252 -86965278 + MTE2a LTR MaLR 4 379 0 4 846 301 359 25 8 chr12 34292348 34292466 -86965064 - RSINE1 SINE B4 -5 160 41 4 846 219 69 0 0 chr12 34293375 34293404 -86964126 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 4 846 278 312 96 19 chr12 34295209 34295366 -86962164 - MIRb SINE MIR -32 236 68 4 846 26 0 0 0 chr12 34295560 34295586 -86961944 + AT_rich Low_complexity Low_complexity 1 26 0 4 846 472 269 92 84 chr12 34295909 34296193 -86961337 + LTR40c LTR ERVL 28 313 -152 4 846 1312 249 80 19 chr12 34296374 34296799 -86960731 - Lx9 LINE L1 -22 7622 7172 4 846 340 366 124 49 chr12 34296833 34296956 -86960574 + MLT1E2 LTR MaLR 200 336 -291 4 846 235 0 57 0 chr12 34296956 34296991 -86960539 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 846 340 366 124 49 chr12 34296991 34297182 -86960348 + MLT1E2 LTR MaLR 337 535 -92 4 846 1019 178 113 10 chr12 34297182 34297386 -86960144 + URR1A DNA MER1_type 1 225 -1 4 846 340 366 124 49 chr12 34297386 34297458 -86960072 + MLT1E2 LTR MaLR 536 615 -12 4 846 390 326 28 28 chr12 34297477 34297619 -86959911 + LTR40c LTR ERVL 300 441 -21 4 846 265 314 11 11 chr12 34297801 34297888 -86959642 - BC1_Mm scRNA scRNA -61 91 5 4 846 425 83 23 23 chr12 34298077 34298163 -86959367 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 846 384 251 31 12 chr12 34298182 34298514 -86959016 + (CA)n Simple_repeat Simple_repeat 1 338 0 4 846 477 0 0 0 chr12 34298562 34298615 -86958915 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 846 429 145 0 0 chr12 34298615 34298691 -86958839 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 846 357 234 8 38 chr12 34299783 34299916 -86957614 + Lx2B LINE L1 6854 6982 -18 4 846 326 326 72 52 chr12 34300656 34300905 -86956625 - L1M5 LINE L1 -2981 3165 2912 4 846 330 318 76 0 chr12 34301667 34301799 -86955731 + B1F SINE Alu 1 142 -7 4 846 417 129 0 0 chr12 34301823 34301893 -86955637 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 4 846 309 323 80 24 chr12 34302645 34302981 -86954549 + L1M5 LINE L1 3710 4064 -2082 4 846 549 92 50 0 chr12 34303515 34303635 -86953895 + (TA)n Simple_repeat Simple_repeat 2 127 0 4 846 396 320 61 65 chr12 34304444 34304721 -86952809 - L1MC LINE L1 -716 5617 5342 4 846 307 274 152 22 chr12 34304838 34304976 -86952554 - L1MC LINE L1 -840 5306 5151 4 846 2833 71 16 0 chr12 34305869 34306251 -86951279 - L1_Mus2 LINE L1 -1 6565 6178 4 846 1580 71 28 0 chr12 34306866 34307077 -86950453 - L1_Mus1 LINE L1 -2 6565 6349 4 846 433 343 18 25 chr12 34307181 34307456 -86950074 + B4A SINE B4 2 274 -18 4 846 219 348 22 0 chr12 34307460 34307552 -86949978 + (CATA)n Simple_repeat Simple_repeat 1 94 0 4 846 925 232 39 5 chr12 34308752 34308960 -86948570 + B3 SINE B2 2 216 0 4 846 713 243 0 7 chr12 34309147 34309296 -86948234 + B1_Mur4 SINE Alu 2 149 -1 4 846 198 71 0 0 chr12 34310773 34310801 -86946729 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 846 467 257 101 69 chr12 34310811 34310999 -86946531 + B3A SINE B2 23 216 0 5 846 323 296 125 23 chr12 34311983 34312111 -86945419 + Cheshire DNA MER1_type 169 309 -2111 5 846 279 0 0 0 chr12 34312396 34312427 -86945103 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 846 26 0 0 0 chr12 34312476 34312502 -86945028 + AT_rich Low_complexity Low_complexity 1 26 0 5 846 1199 286 37 28 chr12 34312784 34313215 -86944315 + Lx8 LINE L1 6840 7274 -199 5 846 966 235 72 78 chr12 34313267 34313923 -86943607 - RMER13B LTR ERVK 0 908 191 5 846 2032 62 13 0 chr12 34313923 34314229 -86943301 + MusHAL1 LINE L1 1642 1951 -761 5 846 26 50 0 0 chr12 34314375 34314415 -86943115 + AT_rich Low_complexity Low_complexity 1 40 0 5 846 644 312 36 45 chr12 34314765 34315209 -86942321 - L1MC1 LINE L1 -1751 6034 5584 5 846 478 283 73 40 chr12 34315201 34315503 -86942027 + L1M3 LINE L1 4943 5254 -886 5 846 636 368 59 22 chr12 34315525 34315797 -86941733 + B4A SINE B4 9 290 -2 5 846 434 320 83 42 chr12 34315830 34316305 -86941225 + L1M3 LINE L1 5256 5752 -437 5 846 297 307 149 44 chr12 34316778 34317074 -86940456 - MLT1A1 LTR MaLR -44 364 38 5 846 378 298 158 11 chr12 34317291 34317474 -86940056 - B3 SINE B2 -6 210 1 5 846 633 332 5 39 chr12 34317711 34317915 -86939615 + MER58A DNA MER1_type 26 222 -2 5 846 1083 326 40 60 chr12 34318218 34318753 -86938777 + L3 LINE CR1 3474 4003 -486 5 846 2914 46 0 0 chr12 34318753 34319099 -86938431 - ORR1A1 LTR MaLR 0 346 1 5 846 1083 326 40 60 chr12 34319099 34319131 -86938399 + L3 LINE CR1 4004 4030 -459 5 846 324 0 0 0 chr12 34319727 34319763 -86937767 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 846 2965 180 34 22 chr12 34320084 34320905 -86936625 - Lx6 LINE L1 -1403 6057 5222 5 846 4399 137 18 40 chr12 34320890 34322426 -86935104 - Lx2 LINE L1 -1 6565 5160 5 846 271 42 20 40 chr12 34322452 34322502 -86935028 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 846 1802 155 0 6 chr12 34322549 34322873 -86934657 + L1_Mur2 LINE L1 3768 4089 -1788 5 846 5318 143 24 1 chr12 34323279 34324245 -86933285 + L1_Mm LINE L1 4090 5077 -806 5 846 994 137 57 20 chr12 34325069 34325360 -86932170 - Lx LINE L1 -11 6643 6240 5 846 299 357 43 92 chr12 34325453 34325638 -86931892 + MER74C LTR ERVL 80 255 -205 5 846 518 0 16 0 chr12 34325788 34325850 -86931680 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 846 2252 209 50 39 chr12 34326487 34327024 -86930506 + RLTR20B3 LTR ERVK 22 564 -13 5 846 246 279 0 59 chr12 34327046 34327084 -86930446 + T-rich Low_complexity Low_complexity 74 111 0 5 846 783 93 139 0 chr12 34327084 34327213 -86930317 - B1_Mus1 SINE Alu 0 148 2 5 846 246 279 0 59 chr12 34327213 34327292 -86930238 + T-rich Low_complexity Low_complexity 1 73 0 5 846 4107 51 0 8 chr12 34327294 34327810 -86929720 + L1Md_F2 LINE L1 6069 6580 -2 5 846 35 24 0 0 chr12 34328726 34328768 -86928762 + AT_rich Low_complexity Low_complexity 1 42 0 5 846 3027 67 8 3 chr12 34328794 34329186 -86928344 - L1_Mus1 LINE L1 -1 6566 6173 5 846 1244 73 0 0 chr12 34329186 34329350 -86928180 + L1_Mus1 LINE L1 6012 6175 -392 5 846 3640 236 81 44 chr12 34329344 34330814 -86926716 + Lx6 LINE L1 44 1371 -4509 5 846 2431 99 8 3 chr12 34330814 34331168 -86926362 + L1_Mus3 LINE L1 6276 6631 -7 5 846 3640 181 70 62 chr12 34331168 34332070 -86925460 + Lx6 LINE L1 1372 2267 -3613 5 846 1188 171 109 42 chr12 34332058 34332330 -86925200 + Lx6 LINE L1 4143 4407 -1473 5 846 2341 50 0 10 chr12 34332330 34332634 -86924896 + L1Md_F3 LINE L1 6269 6569 -15 5 846 1188 171 109 42 chr12 34332634 34332691 -86924839 + Lx6 LINE L1 4408 4493 -1387 5 846 3806 128 21 31 chr12 34332873 34333480 -86924050 - MT2B LTR ERVL 0 601 1 5 846 7712 211 45 13 chr12 34333480 34335011 -86922519 + Lx6 LINE L1 5287 6877 -583 5 846 384 22 0 0 chr12 34335011 34335056 -86922474 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 846 7712 223 47 19 chr12 34335056 34335622 -86921908 + Lx6 LINE L1 6878 7459 -1 5 846 180 77 0 0 chr12 34337028 34337054 -86920476 + (GTATG)n Simple_repeat Simple_repeat 1 26 0 5 846 633 326 20 57 chr12 34337096 34337395 -86920135 - B4A SINE B4 -2 290 3 5 846 558 0 0 0 chr12 34337846 34337908 -86919622 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 846 234 0 0 0 chr12 34337908 34337933 -86919597 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 846 602 247 71 7 chr12 34337937 34338092 -86919438 - B3A SINE B2 -32 166 2 5 846 358 259 71 36 chr12 34338524 34338636 -86918894 + PB1D10 SINE Alu 1 116 -1 5 846 2113 137 29 50 chr12 34339228 34339611 -86917919 + RLTR14 LTR ERV1 8 382 0 5 846 1135 256 3 27 chr12 34339611 34339904 -86917626 + RLTR14-int LTR ERV1 1 286 -5031 5 846 630 214 168 80 chr12 34339910 34339997 -86917533 + RLTR14-int LTR ERV1 818 919 -4398 5 846 264 59 0 0 chr12 34339997 34340031 -86917499 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 105 10780 170 76 25 chr12 34340031 34342385 -86915145 + RLTR14-int LTR ERV1 920 3422 -1895 5 847 6365 49 1 0 chr12 34342390 34343207 -86914323 - L1Md_F2 LINE L1 -84 5799 4982 5 847 5928 52 3 0 chr12 34343204 34343966 -86913564 + L1Md_F2 LINE L1 5767 6530 -52 5 847 2393 189 25 8 chr12 34343978 34343997 -86913533 + RLTR14-int LTR ERV1 3427 3444 -1873 5 847 4200 79 2 7 chr12 34343997 34344558 -86912972 - L1_Mus1 LINE L1 0 6567 6010 5 847 2393 189 25 8 chr12 34344558 34345014 -86912516 + RLTR14-int LTR ERV1 3445 3910 -1407 5 847 252 235 36 24 chr12 34345016 34345099 -86912431 - BGLII_A LTR ERVK -109 336 253 5 847 1434 180 55 22 chr12 34345103 34345295 -86912235 + RLTR14-int LTR ERV1 4000 4190 -1127 5 847 321 26 0 0 chr12 34345295 34345333 -86912197 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 847 1434 180 55 22 chr12 34345333 34345452 -86912078 + RLTR14-int LTR ERV1 4191 4320 -997 5 847 3434 151 154 34 chr12 34345464 34346279 -86911251 + RLTR14-int LTR ERV1 4405 5317 0 5 847 1724 188 22 81 chr12 34346279 34346685 -86910845 + RLTR14 LTR ERV1 1 382 0 5 847 315 205 12 82 chr12 34346757 34346842 -86910688 - RMER30 DNA MER1_type -115 87 9 5 847 2778 23 36 30 chr12 34347146 34347509 -86910021 - RLTR10B2 LTR ERVK 0 365 1 5 847 199 321 0 0 chr12 34348019 34348075 -86909455 + MIRb SINE MIR 183 238 -30 5 847 504 0 0 0 chr12 34348508 34348564 -86908966 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 847 453 158 0 0 chr12 34349055 34349156 -86908374 + GA-rich Low_complexity Low_complexity 1 101 0 5 847 33865 35 0 0 chr12 34349242 34354668 -86902862 + L1Md_T LINE L1 67 5589 -297 5 847 9028 6 0 0 chr12 34354668 34355664 -86901866 + L1Md_T LINE L1 5590 6585 0 5 847 677 233 3 0 chr12 34355998 34356336 -86901194 + (TG)n Simple_repeat Simple_repeat 1 339 0 5 847 762 216 276 22 chr12 34356336 34356568 -86900962 - B4A SINE B4 0 292 2 5 847 21 36 0 0 chr12 34356578 34356606 -86900924 + AT_rich Low_complexity Low_complexity 1 28 0 5 847 206 299 0 15 chr12 34356809 34356877 -86900653 + CT-rich Low_complexity Low_complexity 2 68 0 5 847 5067 174 50 35 chr12 34356956 34357968 -86899562 + RLTR25B LTR ERVK 1 1028 0 5 847 474 310 141 49 chr12 34358033 34358460 -86899070 - Tigger13a DNA MER2_type -217 554 89 5 847 457 285 96 6 chr12 34358880 34359046 -86898484 + MER5A DNA MER1_type 1 181 -8 5 847 315 303 113 43 chr12 34359362 34359548 -86897982 - Charlie8 DNA MER1_type -2157 271 73 5 847 2891 274 27 5 chr12 34361908 34362729 -86894801 + RCHARR1 DNA MER1_type 135 973 -1 5 847 7797 214 43 31 chr12 34363017 34363575 -86893955 - Lx6 LINE L1 -22 7438 6898 5 847 560 53 13 0 chr12 34363575 34363651 -86893879 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 5 847 7797 202 61 25 chr12 34363651 34365385 -86892145 - Lx6 LINE L1 -563 6897 5083 5 847 207 389 179 5 chr12 34366609 34366869 -86890661 - L2a LINE L2 -299 3127 2821 5 847 363 44 0 0 chr12 34366890 34366935 -86890595 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 847 558 110 20 40 chr12 34366946 34367098 -86890432 + (TA)n Simple_repeat Simple_repeat 1 149 0 5 847 509 333 137 26 chr12 34367305 34367693 -86889837 - L2a LINE L2 -727 2692 2262 5 847 320 330 17 35 chr12 34368252 34368368 -86889162 - Cheshire DNA MER1_type -2145 275 162 5 847 286 371 39 19 chr12 34368564 34368718 -86888812 + MER5A1 DNA MER1_type 4 160 -6 5 847 266 232 371 4 chr12 34368915 34369142 -86888388 + L1MB7 LINE L1 5846 6155 -29 5 847 210 204 19 37 chr12 34369517 34369624 -86887906 + GA-rich Low_complexity Low_complexity 1 105 0 5 847 727 288 107 44 chr12 34370215 34370370 -86887160 - L1MA6 LINE L1 0 6300 6155 5 847 456 196 48 29 chr12 34370370 34370475 -86887055 - PB1D9 SINE Alu -12 108 2 5 847 727 288 107 44 chr12 34370475 34370751 -86886779 - L1MA6 LINE L1 -146 6154 5842 5 847 281 314 0 0 chr12 34370920 34370990 -86886540 - PB1D10 SINE Alu -18 99 30 5 847 614 241 153 16 chr12 34372603 34372793 -86884737 + B3 SINE B2 1 216 0 5 847 685 158 0 27 chr12 34372795 34372945 -86884585 + (CCAA)n Simple_repeat Simple_repeat 2 147 0 5 847 809 177 7 13 chr12 34373096 34373245 -86884285 + B1_Mur2 SINE Alu 2 149 0 5 847 22 35 0 0 chr12 34373867 34373896 -86883634 + AT_rich Low_complexity Low_complexity 1 29 0 5 847 219 167 0 0 chr12 34374538 34374580 -86882950 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 5 847 806 191 0 29 chr12 34375208 34375348 -86882182 + B1_Mur2 SINE Alu 9 144 -5 5 847 248 53 26 0 chr12 34375348 34375386 -86882144 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 847 228 268 84 12 chr12 34375461 34375544 -86881986 + PB1D7 SINE Alu 24 112 -8 5 847 648 293 10 45 chr12 34375556 34375756 -86881774 + B3A SINE B2 1 193 -5 5 847 32 26 0 0 chr12 34376358 34376397 -86881133 + AT_rich Low_complexity Low_complexity 1 39 0 5 847 2013 132 98 6 chr12 34376519 34376855 -86880675 + ORR1B2 LTR MaLR 1 367 0 5 847 271 225 69 14 chr12 34377075 34377147 -86880383 + RSINE1 SINE B4 82 157 -8 5 847 368 325 127 25 chr12 34378261 34378577 -86878953 + MLT2B4 LTR ERVL 15 362 -194 5 847 855 327 38 0 chr12 34379478 34379817 -86877713 - Lx8 LINE L1 -696 6777 6426 5 847 224 184 0 39 chr12 34379824 34379875 -86877655 + (TATG)n Simple_repeat Simple_repeat 4 52 0 5 847 1127 295 67 18 chr12 34379875 34380424 -86877106 - Lx7 LINE L1 -1532 6164 5589 5 847 16659 106 9 6 chr12 34380897 34383532 -86873998 + L1_Mm LINE L1 2050 4692 -1191 5 847 3413 63 0 0 chr12 34383533 34383959 -86873571 + L1_Mus1 LINE L1 6134 6559 -8 5 847 585 0 0 0 chr12 34383959 34384024 -86873506 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 847 260 268 97 8 chr12 34384615 34384739 -86872791 + RMER15-int LTR ERVL 2025 2159 -2840 5 847 1035 315 48 11 chr12 34385089 34385522 -86872008 + RMER15-int LTR ERVL 4321 4769 -230 5 847 3826 122 35 2 chr12 34386175 34386775 -86870755 + Lx2 LINE L1 6378 6997 0 5 847 257 341 101 68 chr12 34386824 34386972 -86870558 + RMER15 LTR ERVL 351 503 -72 5 847 787 219 64 27 chr12 34387152 34387448 -86870082 + Lx9 LINE L1 7294 7600 -44 5 847 265 82 41 0 chr12 34387453 34387502 -86870028 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 847 354 80 0 0 chr12 34387549 34387599 -86869931 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 847 21 0 0 0 chr12 34387859 34387880 -86869650 + AT_rich Low_complexity Low_complexity 1 21 0 6 847 29 60 0 0 chr12 34387913 34387963 -86869567 + AT_rich Low_complexity Low_complexity 1 50 0 6 847 685 247 6 25 chr12 34387968 34388126 -86869404 - B3 SINE B2 -60 156 2 6 847 690 266 45 34 chr12 34388138 34388317 -86869213 - B3 SINE B2 0 216 36 6 847 277 268 0 0 chr12 34389542 34389624 -86867906 + CT-rich Low_complexity Low_complexity 1 82 0 6 847 914 224 67 59 chr12 34389791 34390253 -86867277 - MT2B LTR ERVL -57 544 1 6 847 853 289 44 33 chr12 34390325 34390597 -86866933 - Lx5 LINE L1 -15 7035 6761 6 847 26 0 0 0 chr12 34390618 34390644 -86866886 + AT_rich Low_complexity Low_complexity 1 26 0 6 847 1087 226 12 4 chr12 34391101 34391341 -86866189 - Lx5 LINE L1 -278 6772 6531 6 847 1347 71 33 0 chr12 34391466 34391650 -86865880 - B2_Mm1a SINE B2 0 193 4 6 847 252 242 83 61 chr12 34391754 34391886 -86865644 - L1MC2 LINE L1 -7 6337 6203 6 847 342 0 0 0 chr12 34392185 34392223 -86865307 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 847 301 299 118 6 chr12 34392568 34392746 -86864784 + L1M4c LINE L1 2105 2302 -4082 6 847 1105 306 40 25 chr12 34392844 34392959 -86864571 + L1M4c LINE L1 2367 2476 -3900 6 847 2851 168 9 13 chr12 34392959 34393489 -86864041 - RLTR11A LTR ERVK 0 528 1 6 847 1105 306 40 25 chr12 34393489 34394150 -86863380 + L1M4c LINE L1 2477 3155 -3221 6 847 247 342 36 77 chr12 34394177 34394345 -86863185 - RSINE1 SINE B4 0 165 5 6 847 312 255 31 31 chr12 34394349 34394446 -86863084 + L1M4c LINE L1 3142 3238 -3141 6 847 285 140 105 0 chr12 34394449 34394506 -86863024 - B1_Mur3 SINE Alu -46 103 41 6 847 449 103 0 0 chr12 34394456 34394524 -86863006 - 4.5SRNA scRNA scRNA -6 88 21 6 847 450 265 87 3 chr12 34394553 34394898 -86862632 + L1M4c LINE L1 3302 3675 -2701 6 847 1923 165 147 45 chr12 34395024 34395555 -86861975 - RMER4B LTR ERVK 0 585 1 6 847 266 354 0 17 chr12 34395622 34395740 -86861790 + MLT1A0 LTR MaLR 250 365 0 6 847 1439 285 169 25 chr12 34395746 34397136 -86860394 + L1M4c LINE L1 3679 5269 -1107 6 847 345 145 0 0 chr12 34397359 34397421 -86860109 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 847 247 203 37 86 chr12 34397711 34397792 -86859738 + ID4 SINE ID 2 78 -5 6 847 935 46 0 30 chr12 34398015 34398150 -86859380 + L1Md_F2 LINE L1 6440 6570 -12 6 847 22 0 0 0 chr12 34399224 34399246 -86858284 + AT_rich Low_complexity Low_complexity 1 22 0 6 847 2010 168 38 15 chr12 34400270 34400662 -86856868 + Lx LINE L1 6247 6647 -7 6 847 393 39 0 0 chr12 34400663 34400714 -86856816 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 847 445 313 97 42 chr12 34401378 34401615 -86855915 - MIRc SINE MIR -15 253 4 6 847 203 161 0 0 chr12 34401950 34401981 -86855549 + polypurine Low_complexity Low_complexity 2 32 0 6 847 224 114 45 0 chr12 34402410 34402454 -86855076 + GA-rich Low_complexity Low_complexity 2 47 0 6 847 237 33 0 0 chr12 34403530 34403560 -86853970 + (A)n Simple_repeat Simple_repeat 1 30 0 6 847 2901 57 0 8 chr12 34404710 34405082 -86852448 - L1_Mus1 LINE L1 0 6567 6199 6 847 1037 54 0 0 chr12 34405082 34405212 -86852318 + L1_Mus4 LINE L1 5649 5778 -858 6 847 492 72 0 35 chr12 34405276 34405363 -86852167 + L1Md_F2 LINE L1 6496 6579 -3 6 847 288 0 0 0 chr12 34405528 34405560 -86851970 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 847 358 297 0 0 chr12 34406311 34406429 -86851101 - L1MA4A LINE L1 -364 5939 5822 6 847 201 182 0 0 chr12 34406467 34406500 -86851030 + T-rich Low_complexity Low_complexity 1 33 0 6 847 399 235 74 0 chr12 34406591 34406740 -86850790 - L1MA4A LINE L1 -809 5491 5332 6 847 226 176 39 0 chr12 34406872 34406923 -86850607 + Lx4B LINE L1 5740 5792 -1266 6 847 327 278 24 12 chr12 34407237 34407401 -86850129 - L1MA4A LINE L1 -863 5280 5115 6 847 298 114 50 12 chr12 34407576 34407656 -86849874 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 847 23257 64 1 0 chr12 34408604 34412454 -86845076 - L1Md_F2 LINE L1 -12 6570 2719 6 847 612 204 247 18 chr12 34412673 34412843 -86844687 - MTD LTR MaLR -14 405 197 6 847 501 110 0 0 chr12 34412846 34412928 -86844602 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 847 257 281 133 76 chr12 34413093 34413251 -86844279 - B4A SINE B4 -22 270 104 6 847 496 224 0 0 chr12 34413251 34413349 -86844181 - Lx5 LINE L1 -135 6915 6818 6 847 885 264 14 0 chr12 34413352 34413560 -86843970 - MTD LTR MaLR -207 212 2 6 847 1709 122 14 21 chr12 34413907 34414193 -86843337 - Lx LINE L1 -10 6644 6361 6 847 503 331 75 79 chr12 34414782 34415074 -86842456 + B4A SINE B4 2 292 0 6 847 278 216 40 13 chr12 34415099 34415174 -86842356 + ID4_ SINE ID 3 79 -4 6 847 513 232 0 0 chr12 34415175 34415426 -86842104 + (CA)n Simple_repeat Simple_repeat 1 251 0 6 847 285 183 0 0 chr12 34415676 34415736 -86841794 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 847 262 319 138 32 chr12 34415854 34415977 -86841553 + MER63A DNA AcHobo 7 142 -68 6 847 414 175 0 0 chr12 34416293 34416373 -86841157 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 847 301 336 15 83 chr12 34418031 34418164 -86839366 + RSINE1 SINE B4 4 127 -38 6 847 260 114 0 22 chr12 34418371 34418416 -86839114 - MTE2b LTR MaLR -2 382 339 6 847 282 333 144 29 chr12 34418419 34418546 -86838984 - ID_B1 SINE B4 -62 162 17 6 847 330 26 0 0 chr12 34418546 34418585 -86838945 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 847 282 333 144 29 chr12 34418585 34418596 -86838934 - ID SINE ID -208 16 8 6 847 260 194 0 61 chr12 34418711 34418777 -86838753 + IAPLTR3-int LTR ERVK 1215 1276 -5545 6 847 762 113 0 0 chr12 34419380 34419495 -86838035 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 6 847 477 50 0 0 chr12 34419595 34419655 -86837875 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 847 7928 144 29 4 chr12 34419658 34421545 -86835985 - Lx2 LINE L1 -24 6973 5033 6 847 358 295 96 7 chr12 34421571 34421841 -86835689 + L1ME2 LINE L1 5636 5929 -235 6 847 1146 300 60 14 chr12 34422240 34422592 -86834938 - MTE2b LTR MaLR -11 368 1 6 847 180 53 79 0 chr12 34422605 34422643 -86834887 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 847 704 191 31 8 chr12 34424295 34424422 -86833108 - B3 SINE B2 -86 130 1 6 847 31 58 0 0 chr12 34424665 34424717 -86832813 + AT_rich Low_complexity Low_complexity 1 52 0 6 847 27 29 0 0 chr12 34424793 34424827 -86832703 + AT_rich Low_complexity Low_complexity 1 34 0 6 847 1898 194 29 0 chr12 34425127 34425508 -86832022 - L1_Mur2 LINE L1 -191 5686 5295 6 847 3138 230 47 27 chr12 34425507 34426406 -86831124 + Lx2B LINE L1 6039 6955 -45 6 847 288 77 0 0 chr12 34426406 34426445 -86831085 + (GGA)n Simple_repeat Simple_repeat 1 39 0 6 847 194 290 33 116 chr12 34426871 34426992 -86830538 - L2 LINE L2 -510 2909 2799 6 847 763 319 92 43 chr12 34427047 34427400 -86830130 - MLT2B1 LTR ERVL -226 375 1 6 847 22 35 0 0 chr12 34427411 34427440 -86830090 + AT_rich Low_complexity Low_complexity 1 29 0 6 847 4227 60 6 0 chr12 34428164 34428698 -86828832 + L1_Mus1 LINE L1 6031 6567 0 6 847 213 94 0 0 chr12 34429460 34429492 -86828038 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 847 469 323 25 12 chr12 34429526 34429689 -86827841 - B4A SINE B4 -2 290 126 6 847 7421 55 0 19 chr12 34429931 34431054 -86826476 - L1Md_F2 LINE L1 -11 6571 5465 6 847 920 149 0 7 chr12 34431238 34431387 -86826143 + B1_Mur3 SINE Alu 2 149 0 6 847 229 219 0 0 chr12 34431689 34431730 -86825800 - RMER16 LTR ERVK -227 306 266 6 847 2932 69 0 5 chr12 34431754 34432131 -86825399 - L1_Mus2 LINE L1 -1 6565 6191 6 847 2855 25 0 15 chr12 34432131 34432463 -86825067 + IAPLTR2b LTR ERVK 1 327 0 6 847 1068 116 41 72 chr12 34432464 34432743 -86824787 + IAPEz-int LTR ERVK 9 252 -7329 6 847 244 321 0 0 chr12 34432743 34432796 -86824734 + RLTR27 LTR ERVK 223 275 -34 6 847 3176 86 0 26 chr12 34432798 34433381 -86824149 + IAPEz-int LTR ERVK 170 662 -5819 6 847 2552 67 0 3 chr12 34433381 34433724 -86823806 + IAPEz-int LTR ERVK 1359 1700 -4781 6 847 5948 71 12 11 chr12 34433719 34434545 -86822985 + IAPEz-int LTR ERVK 5653 6479 -2 6 847 2913 12 0 15 chr12 34434547 34434879 -86822651 + IAPLTR2b LTR ERVK 1 327 0 6 847 2009 79 4 0 chr12 34434888 34435167 -86822363 + L1_Mus2 LINE L1 5839 6118 -448 6 847 383 263 10 10 chr12 34435359 34435455 -86822075 - MLT2F LTR ERVL -567 96 1 6 847 234 0 0 0 chr12 34435883 34435909 -86821621 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 847 759 239 124 50 chr12 34435934 34436176 -86821354 + B4A SINE B4 33 292 0 6 847 294 29 0 0 chr12 34436449 34436484 -86821046 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 6 847 791 177 7 28 chr12 34436486 34436631 -86820899 - B1_Mur3 SINE Alu -6 143 2 6 847 2107 102 95 12 chr12 34436960 34437070 -86820460 - Lx LINE L1 -10 6644 6536 6 847 189 0 0 0 chr12 34437070 34437091 -86820439 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 6 847 2107 102 95 12 chr12 34437091 34437317 -86820213 - Lx LINE L1 -119 6535 6280 6 847 424 252 0 8 chr12 34437656 34437788 -86819742 - L1MC LINE L1 -2229 3917 3787 6 847 998 150 0 11 chr12 34437809 34437991 -86819539 + CT-rich Low_complexity Low_complexity 1 180 0 6 847 422 281 118 13 chr12 34438015 34438253 -86819277 - L1MC LINE L1 -2425 3721 3459 6 847 255 61 0 0 chr12 34438996 34439029 -86818501 + (TAA)n Simple_repeat Simple_repeat 1 33 0 6 847 330 185 46 0 chr12 34439203 34439268 -86818262 - Lx7 LINE L1 -818 6878 6811 6 847 541 170 0 0 chr12 34439289 34439383 -86818147 + Lx7 LINE L1 6909 7002 -694 6 847 21372 120 22 5 chr12 34439381 34443882 -86813648 - L1Md_F LINE L1 -1313 4570 99 6 847 372 215 96 0 chr12 34443875 34444010 -86813520 + Lx7 LINE L1 7549 7696 0 6 847 447 159 0 0 chr12 34445191 34445304 -86812226 + (TCTG)n Simple_repeat Simple_repeat 4 116 0 6 847 364 355 0 9 chr12 34445354 34445465 -86812065 - PB1D10 SINE Alu -7 110 1 6 847 281 350 84 26 chr12 34446554 34446780 -86810750 - L2 LINE L2 -433 2986 2748 6 847 21 36 0 0 chr12 34447338 34447366 -86810164 + AT_rich Low_complexity Low_complexity 1 28 0 6 847 471 200 22 28 chr12 34448017 34448197 -86809333 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 847 2335 92 0 3 chr12 34448236 34448554 -86808976 + MTB_Mm LTR MaLR 1 317 -90 6 847 480 230 119 64 chr12 34448843 34449061 -86808469 + L1MB2 LINE L1 5782 6011 -160 6 847 770 149 106 28 chr12 34449623 34449802 -86807728 - B2_Mm2 SINE B2 -1 194 2 6 847 829 80 0 0 chr12 34450211 34450324 -86807206 - L1_Mus2 LINE L1 -1 6565 6453 6 847 239 72 0 23 chr12 34450477 34450520 -86807010 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 6 847 240 222 0 69 chr12 34451111 34451169 -86806361 - ID4 SINE ID -29 54 1 7 847 428 294 76 0 chr12 34451176 34451295 -86806235 - B1F SINE Alu -9 140 13 7 847 351 343 40 73 chr12 34451295 34451327 -86806203 - ID_B1 SINE B4 -9 215 70 7 847 33574 48 2 3 chr12 34451377 34456782 -86800748 + L1Md_T LINE L1 92 5589 -297 7 847 8488 28 1 4 chr12 34456782 34457781 -86799749 + L1Md_T LINE L1 5590 6585 0 7 847 377 365 13 33 chr12 34458412 34458565 -86798965 - RSINE1 SINE B4 0 165 16 7 847 289 308 13 0 chr12 34458922 34459000 -86798530 - B3 SINE B2 -7 209 131 7 847 24 0 0 0 chr12 34459004 34459028 -86798502 + AT_rich Low_complexity Low_complexity 1 24 0 7 847 216 0 0 0 chr12 34459277 34459301 -86798229 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 847 243 0 0 0 chr12 34459583 34459610 -86797920 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 847 410 0 20 0 chr12 34459610 34459659 -86797871 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 847 543 269 89 8 chr12 34461811 34461993 -86795537 + MTE2b LTR MaLR 1 216 -163 7 847 413 146 66 0 chr12 34461993 34462144 -86795386 + CT-rich Low_complexity Low_complexity 1 161 0 7 847 23 0 0 0 chr12 34462592 34462615 -86794915 + AT_rich Low_complexity Low_complexity 1 23 0 7 847 674 159 0 8 chr12 34462670 34462797 -86794733 + CT-rich Low_complexity Low_complexity 2 127 0 7 847 470 293 66 0 chr12 34462797 34462964 -86794566 - Lx6 LINE L1 -708 6752 6575 7 847 225 94 0 0 chr12 34462982 34463014 -86794516 + (TAA)n Simple_repeat Simple_repeat 1 32 0 7 847 195 42 0 0 chr12 34463341 34463365 -86794165 + (T)n Simple_repeat Simple_repeat 1 24 0 7 847 22 35 0 0 chr12 34465183 34465212 -86792318 + AT_rich Low_complexity Low_complexity 1 29 0 7 847 948 126 11 22 chr12 34465754 34465933 -86791597 + (CACG)n Simple_repeat Simple_repeat 1 177 0 7 847 495 209 0 0 chr12 34465934 34466049 -86791481 + (CA)n Simple_repeat Simple_repeat 1 115 0 7 847 279 0 0 0 chr12 34468083 34468114 -86789416 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 847 491 133 14 29 chr12 34469299 34469438 -86788092 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 7 847 268 400 138 15 chr12 34470537 34471007 -86786523 - L4 LINE RTE -201 1828 1301 7 848 405 0 0 0 chr12 34473320 34473365 -86784165 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 848 3215 54 5 12 chr12 34473422 34473835 -86783695 - L1_Mus3 LINE L1 -6 6632 6223 7 848 1921 244 67 17 chr12 34473871 34474450 -86783080 + RCHARR1 DNA MER1_type 366 973 -1 7 848 740 245 155 63 chr12 34474985 34475347 -86782183 + RMER5 LTR ERV1 140 534 0 7 848 352 319 115 7 chr12 34475907 34476046 -86781484 + B4 SINE B4 1 154 -138 7 848 216 241 0 0 chr12 34476160 34476218 -86781312 + GA-rich Low_complexity Low_complexity 1 58 0 7 848 2197 146 156 23 chr12 34476424 34476925 -86780605 - RMER6A LTR ERVK 0 756 1 7 848 254 212 131 0 chr12 34476925 34477024 -86780506 + L1MA5 LINE L1 6188 6299 -1 7 848 296 265 44 0 chr12 34478003 34478071 -86779459 - LFSINE_Vert SINE SINE -7 452 382 7 848 316 187 60 101 chr12 34478236 34478385 -86779145 + Lx8 LINE L1 7324 7466 -7 7 848 21 0 0 0 chr12 34478386 34478407 -86779123 + AT_rich Low_complexity Low_complexity 1 21 0 7 848 183 100 0 0 chr12 34478732 34478762 -86778768 + (TTA)n Simple_repeat Simple_repeat 2 31 0 7 848 21 36 0 0 chr12 34479199 34479227 -86778303 + AT_rich Low_complexity Low_complexity 1 28 0 7 848 239 312 0 0 chr12 34479446 34479510 -86778020 + CT-rich Low_complexity Low_complexity 5 68 0 7 848 23 33 0 0 chr12 34479852 34479882 -86777648 + AT_rich Low_complexity Low_complexity 1 30 0 7 848 24 77 0 0 chr12 34480158 34480210 -86777320 + AT_rich Low_complexity Low_complexity 1 52 0 7 848 1121 69 21 0 chr12 34480506 34480651 -86776879 - B1_Mus1 SINE Alu 0 148 1 7 848 5287 67 49 18 chr12 34480661 34481393 -86776137 - L1_Mus2 LINE L1 0 6566 5812 7 848 318 287 148 0 chr12 34481395 34481503 -86776027 - ORR1D2 LTR MaLR -235 135 12 7 848 22 0 0 0 chr12 34481586 34481608 -86775922 + AT_rich Low_complexity Low_complexity 1 22 0 7 848 405 0 0 0 chr12 34481760 34481805 -86775725 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 7 848 827 131 15 23 chr12 34486037 34486170 -86771360 - B1_Mus1 SINE Alu -12 136 5 7 848 22 35 0 0 chr12 34487145 34487174 -86770356 + AT_rich Low_complexity Low_complexity 1 29 0 7 848 637 256 102 10 chr12 34487174 34487371 -86770159 - Lx6 LINE L1 -9 7451 7237 7 848 7074 13 0 0 chr12 34490028 34490854 -86766676 + L1Md_A LINE L1 5788 6582 0 7 848 231 351 85 0 chr12 34491469 34491563 -86765967 + ORR1E LTR MaLR 6 107 -252 7 848 24 0 0 0 chr12 34491687 34491711 -86765819 + AT_rich Low_complexity Low_complexity 1 24 0 7 848 268 309 39 54 chr12 34491993 34492123 -86765407 + B3 SINE B2 86 213 -3 7 848 336 45 0 0 chr12 34492633 34492639 -86764891 + (TCC)n Simple_repeat Simple_repeat 2 7 0 7 848 1284 89 0 0 chr12 34492639 34492819 -86764711 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 848 336 45 0 0 chr12 34492819 34492856 -86764674 + (TCC)n Simple_repeat Simple_repeat 1 37 0 7 848 712 226 14 7 chr12 34492867 34493014 -86764516 - B1_Mus1 SINE Alu 0 148 1 7 848 4822 79 39 11 chr12 34493105 34493770 -86763760 + L1_Mus1 LINE L1 5884 6567 0 7 848 1084 258 28 35 chr12 34494334 34494728 -86762802 + L1_Mur3 LINE L1 2544 2934 -2946 7 848 1411 217 95 9 chr12 34494750 34495066 -86762464 + ORR1B1 LTR MaLR 52 394 0 7 848 427 49 0 0 chr12 34495066 34495127 -86762403 - L1_Mur3 LINE L1 -512 5368 5308 7 848 2469 45 35 0 chr12 34495158 34495472 -86762058 - IAPLTR2b LTR ERVK -2 325 1 7 848 325 247 11 0 chr12 34495474 34495567 -86761963 + L1_Mur3 LINE L1 3782 3875 -2005 7 848 24 0 0 0 chr12 34495934 34495958 -86761572 + AT_rich Low_complexity Low_complexity 1 24 0 7 848 2577 56 3 0 chr12 34496035 34496356 -86761174 + L1_Mus2 LINE L1 6244 6565 -1 7 848 1322 224 15 48 chr12 34496376 34496713 -86760817 - ORR1C2 LTR MaLR -58 326 1 7 848 1050 122 0 0 chr12 34497234 34497492 -86760038 + (CA)n Simple_repeat Simple_repeat 1 258 0 7 848 328 274 34 92 chr12 34497788 34498136 -86759394 + RLTR19-int LTR ERVK 1605 1887 -3635 7 848 1747 254 50 94 chr12 34498138 34498813 -86758717 + MTC-int LTR MaLR 469 1358 -605 7 848 30 45 0 0 chr12 34498813 34498857 -86758673 + AT_rich Low_complexity Low_complexity 1 44 0 7 848 807 190 55 35 chr12 34499102 34499358 -86758172 + RLTR19-int LTR ERVK 1863 2123 -3399 7 848 999 262 72 42 chr12 34499363 34499864 -86757666 + RLTR19-int LTR ERVK 2357 2872 -3265 7 848 254 240 0 138 chr12 34500000 34500087 -86757443 + RLTR19-int LTR ERVK 2949 3023 -3114 1 848 278 239 0 15 chr12 34500192 34500260 -86757270 + RMER17C-int LTR ERVK 2113 2179 -1059 2 848 1410 208 34 50 chr12 34500456 34500897 -86756633 + RLTR19-int LTR ERVK 3424 3857 -2280 1 848 588 143 0 0 chr12 34500906 34501004 -86756526 + (TA)n Simple_repeat Simple_repeat 2 99 0 3 848 480 214 47 46 chr12 34501009 34501212 -86756318 + RLTR19-int LTR ERVK 2648 2791 -447 1 848 1032 255 28 77 chr12 34501250 34501602 -86755928 + RLTR19-int LTR ERVK 4037 4371 -1766 4 848 546 175 8 24 chr12 34501604 34501727 -86755803 + Lx2 LINE L1 6850 6970 -27 5 848 244 48 0 45 chr12 34501728 34501772 -86755758 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 6 848 362 289 28 33 chr12 34501858 34502069 -86755461 + RLTR14-int LTR ERV1 4891 5100 -217 7 848 1521 164 182 10 chr12 34502175 34502488 -86755042 - ORR1B2 LTR MaLR 0 367 1 8 848 588 279 240 10 chr12 34503034 34503342 -86754188 + MTEa LTR MaLR 1 379 0 9 848 240 251 152 14 chr12 34503626 34503738 -86753792 - ID2 SINE ID -29 123 3 1 848 354 74 0 0 chr12 34503985 34504039 -86753491 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 1 848 1460 237 19 0 chr12 34505593 34505909 -86751621 - MTD LTR MaLR -97 322 1 1 848 976 184 154 70 chr12 34506096 34506382 -86751148 + RLTR20C LTR ERVK 3 312 -222 1 848 1777 72 8 4 chr12 34506405 34506656 -86750874 + L1_Mus3 LINE L1 6381 6632 -6 1 848 339 211 14 14 chr12 34506669 34506741 -86750789 + RLTR20C LTR ERVK 507 578 0 1 848 271 278 80 36 chr12 34506911 34507023 -86750507 - B1F2 SINE Alu -1 148 32 1 848 315 261 112 59 chr12 34507419 34507606 -86749924 + L1MEg LINE L1 1484 1680 -4404 1 848 1081 151 6 16 chr12 34507639 34507821 -86749709 + B2_Mm2 SINE B2 2 181 -14 1 848 207 0 0 0 chr12 34507826 34507849 -86749681 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 848 336 351 49 49 chr12 34509149 34509311 -86748219 + RSINE1 SINE B4 4 165 0 1 848 434 284 225 28 chr12 34509493 34509920 -86747610 - L1MEc LINE L1 -4879 1521 1011 2 848 473 16 33 0 chr12 34510177 34510238 -86747292 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 2 848 371 289 50 63 chr12 34510238 34510397 -86747133 + HAL1-3A_ME LINE L1 2284 2440 -418 2 848 243 232 0 0 chr12 34510759 34510815 -86746715 - 5S rRNA rRNA -32 89 34 2 848 216 0 0 0 chr12 34511891 34511915 -86745615 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 848 432 243 29 10 chr12 34512962 34513066 -86744464 + Tigger12 DNA MER2_type 576 681 -1278 2 848 325 289 96 7 chr12 34513208 34513344 -86744186 + Tigger12 DNA MER2_type 1665 1812 -147 2 848 225 0 0 0 chr12 34513371 34513396 -86744134 + (T)n Simple_repeat Simple_repeat 1 25 0 2 848 1271 93 5 11 chr12 34513667 34513851 -86743679 - B2_Mm2 SINE B2 -12 183 1 2 848 235 351 70 9 chr12 34514431 34514546 -86742984 - LTR85a LTR Gypsy? -569 133 12 2 848 869 231 165 14 chr12 34514692 34515043 -86742487 - Lx9 LINE L1 -9 7635 7232 2 848 306 169 0 0 chr12 34515358 34515423 -86742107 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 848 510 279 79 58 chr12 34515437 34515627 -86741903 - Lx8 LINE L1 -153 7320 7127 3 848 761 212 0 6 chr12 34515770 34515950 -86741580 + GA-rich Low_complexity Low_complexity 2 180 0 3 848 28 48 0 0 chr12 34516503 34516545 -86740985 + AT_rich Low_complexity Low_complexity 1 42 0 3 848 288 77 0 0 chr12 34517455 34517494 -86740036 + (CAT)n Simple_repeat Simple_repeat 2 40 0 3 848 268 340 80 35 chr12 34517881 34518082 -86739448 - MLT1K LTR MaLR -185 410 201 3 848 2678 200 47 33 chr12 34518487 34519087 -86738443 - RMER19C LTR ERVK 0 611 4 3 848 942 293 40 40 chr12 34519264 34519641 -86737889 - MTE2b LTR MaLR 0 379 3 3 848 1116 257 21 35 chr12 34519768 34520054 -86737476 + B4 SINE B4 3 284 -8 3 848 401 53 0 18 chr12 34520111 34520168 -86737362 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 848 405 0 0 0 chr12 34520944 34520989 -86736541 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 848 182 258 172 0 chr12 34521383 34521476 -86736054 + MIRc SINE MIR 25 133 -135 4 848 230 319 17 17 chr12 34521571 34521689 -86735841 + A-rich Low_complexity Low_complexity 5 122 0 4 848 315 49 0 0 chr12 34521856 34521897 -86735633 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 848 405 313 114 41 chr12 34522061 34522281 -86735249 - Lx8 LINE L1 -10 7463 7228 4 848 411 21 0 0 chr12 34522282 34522330 -86735200 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 848 364 365 52 74 chr12 34522509 34522834 -86734696 - ORR1E LTR MaLR -41 318 1 4 848 5664 88 18 2 chr12 34523635 34524435 -86733095 - L1_Mus3 LINE L1 0 6638 5827 4 848 249 33 0 0 chr12 34524501 34524531 -86732999 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 848 453 36 0 0 chr12 34525319 34525374 -86732156 + (TTA)n Simple_repeat Simple_repeat 3 57 0 4 848 389 280 0 0 chr12 34525461 34525536 -86731994 - RSINE1 SINE B4 -89 76 2 5 848 340 315 160 21 chr12 34525712 34525949 -86731581 - B4A SINE B4 -18 274 5 5 848 1109 283 74 60 chr12 34525959 34526118 -86731412 + Lx7 LINE L1 6846 7031 -665 5 848 252 0 0 0 chr12 34526118 34526146 -86731384 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 848 1109 283 74 60 chr12 34526146 34526418 -86731112 + Lx7 LINE L1 7032 7283 -413 5 848 264 182 14 50 chr12 34526438 34526577 -86730953 + (TATG)n Simple_repeat Simple_repeat 4 137 0 5 848 343 177 43 48 chr12 34526561 34526917 -86730613 + (TG)n Simple_repeat Simple_repeat 1 353 0 5 848 200 98 73 0 chr12 34526986 34527027 -86730503 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 5 848 198 346 126 36 chr12 34527333 34527444 -86730086 + L2b LINE L2 3247 3367 -8 5 848 2031 125 15 59 chr12 34527743 34528082 -86729448 - ORR1A3 LTR MaLR -2 324 1 5 848 500 323 100 37 chr12 34528174 34528237 -86729293 - B4 SINE B4 -4 288 229 5 848 1177 62 7 0 chr12 34528237 34528383 -86729147 - B1_Mus2 SINE Alu 0 147 1 6 848 550 270 131 29 chr12 34528383 34528589 -86728941 - B4A SINE B4 -64 228 2 5 848 249 326 36 45 chr12 34530940 34531165 -86726365 + L1MB1 LINE L1 5884 6112 -56 6 848 230 194 0 14 chr12 34531855 34531928 -86725602 + GA-rich Low_complexity Low_complexity 107 178 0 6 848 221 155 0 17 chr12 34532236 34532295 -86725235 + T-rich Low_complexity Low_complexity 2 59 0 6 848 1260 101 0 6 chr12 34533669 34533848 -86723682 + B2_Mm2 SINE B2 1 178 -17 6 848 204 125 0 0 chr12 34533848 34533880 -86723650 + (GGA)n Simple_repeat Simple_repeat 3 34 0 6 848 217 323 79 75 chr12 34533926 34534140 -86723390 + L3 LINE CR1 788 1002 -3487 6 848 224 333 35 9 chr12 34535250 34535365 -86722165 - MIR SINE MIR -123 139 22 6 848 2243 168 61 8 chr12 34535506 34535902 -86721628 - MTC LTR MaLR 0 421 5 6 848 252 343 51 9 chr12 34539104 34539319 -86718211 - L1M5 LINE L1 -587 5607 5384 6 848 31805 83 6 4 chr12 34539727 34544671 -86712859 + L1Md_F2 LINE L1 631 5586 -297 7 848 7526 74 2 1 chr12 34544672 34545649 -86711881 + L1Md_F2 LINE L1 5588 6565 -17 7 848 196 305 0 89 chr12 34545912 34546002 -86711528 - L2b LINE L2 -295 3080 2999 7 848 6733 60 20 0 chr12 34546460 34547316 -86710214 - L1_Mus1 LINE L1 0 6567 5695 7 848 5459 80 1 1 chr12 34547317 34548042 -86709488 + L1_Mus1 LINE L1 4976 5700 -183 7 848 1653 80 4 55 chr12 34548052 34548305 -86709225 - L1_Mus2 LINE L1 0 6566 6327 7 848 207 233 164 0 chr12 34549568 34549641 -86707889 + MIRc SINE MIR 175 259 -9 7 848 477 186 15 8 chr12 34549725 34549855 -86707675 + GA-rich Low_complexity Low_complexity 3 133 0 7 848 1102 107 6 6 chr12 34549855 34550033 -86707497 + (GAA)n Simple_repeat Simple_repeat 1 178 0 7 848 474 18 0 0 chr12 34550902 34550957 -86706573 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 848 867 245 187 25 chr12 34552533 34552935 -86704595 - RLTR11A2 LTR ERVK -60 467 1 7 848 213 39 0 0 chr12 34554017 34554043 -86703487 + (TA)n Simple_repeat Simple_repeat 1 26 0 7 848 4436 56 0 0 chr12 34554048 34554598 -86702932 + L1Md_F2 LINE L1 5037 5586 -297 8 848 8110 49 1 1 chr12 34554598 34555591 -86701939 + L1Md_F2 LINE L1 5587 6579 -3 8 848 21 0 0 0 chr12 34555591 34555612 -86701918 + AT_rich Low_complexity Low_complexity 1 21 0 8 848 41 36 0 0 chr12 34555941 34555996 -86701534 + AT_rich Low_complexity Low_complexity 1 55 0 8 848 438 20 0 0 chr12 34556003 34556054 -86701476 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 848 990 174 14 5 chr12 34556078 34556286 -86701244 - L1_Mur3 LINE L1 -601 5279 5070 8 848 288 299 22 44 chr12 34556740 34556831 -86700699 + RSINE1 SINE B4 16 104 -61 8 848 324 0 0 0 chr12 34556848 34556884 -86700646 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 848 736 218 0 0 chr12 34556910 34557043 -86700487 - B1_Mur1 SINE Alu -16 133 1 8 848 24 32 0 0 chr12 34559058 34559089 -86698441 + AT_rich Low_complexity Low_complexity 1 31 0 8 848 747 304 97 30 chr12 34559570 34559909 -86697621 - Lx8 LINE L1 -20 7453 7092 8 848 343 75 0 0 chr12 34560685 34560738 -86696792 - B1_Mus2 SINE Alu 0 147 95 9 848 40021 21 2 6 chr12 34561252 34567424 -86690106 - L1Md_A LINE L1 0 6582 439 9 848 324 380 25 40 chr12 34568160 34568360 -86689170 + B3A SINE B2 2 198 0 9 848 266 287 42 21 chr12 34568388 34568484 -86689046 + L1_Mur3 LINE L1 103 200 -7528 9 848 16994 164 33 37 chr12 34568485 34570614 -86686916 + L1_Mur3 LINE L1 1328 3476 -2401 9 848 189 0 0 0 chr12 34570614 34570635 -86686895 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 9 848 16994 164 33 37 chr12 34570635 34572138 -86685392 + L1_Mur3 LINE L1 3477 4943 -934 9 848 4453 228 29 75 chr12 34572137 34573052 -86684478 + Lx6 LINE L1 6379 7256 -204 9 848 1174 71 105 6 chr12 34573052 34573223 -86684307 - B2_Mm2 SINE B2 -7 188 1 9 848 4453 228 29 75 chr12 34573223 34573441 -86684089 + Lx6 LINE L1 7257 7460 0 9 848 21 71 0 0 chr12 34573455 34573497 -86684033 + AT_rich Low_complexity Low_complexity 1 42 0 9 848 1723 240 62 43 chr12 34574096 34574649 -86682881 + L1_Mur3 LINE L1 1897 2459 -3421 9 848 1366 181 19 29 chr12 34574646 34574958 -86682572 + L1_Mur3 LINE L1 3687 3995 -1885 9 848 806 203 27 0 chr12 34574963 34575111 -86682419 + Lx7 LINE L1 6327 6478 -1218 9 848 336 48 0 0 chr12 34575111 34575153 -86682377 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 848 1561 276 21 23 chr12 34575169 34575600 -86681930 + Lx7 LINE L1 6573 7002 -694 9 848 472 189 14 0 chr12 34575740 34575883 -86681647 + CT-rich Low_complexity Low_complexity 2 146 0 1 848 304 140 45 45 chr12 34575890 34576047 -86681483 + (TCTA)n Simple_repeat Simple_repeat 2 158 0 1 848 496 308 43 9 chr12 34576056 34576266 -86681264 + ORR1D1 LTR MaLR 158 374 0 1 848 22 56 0 0 chr12 34576345 34576381 -86681149 + AT_rich Low_complexity Low_complexity 1 36 0 1 848 330 230 10 39 chr12 34576403 34576507 -86681023 + Lx7 LINE L1 7578 7678 -18 9 848 21 71 0 0 chr12 34576610 34576652 -86680878 + AT_rich Low_complexity Low_complexity 1 42 0 1 848 231 228 18 0 chr12 34578555 34578612 -86678918 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 1 848 206 234 0 72 chr12 34578967 34579050 -86678480 - L3 LINE CR1 -240 4249 4173 1 848 24 0 0 0 chr12 34579757 34579781 -86677749 + AT_rich Low_complexity Low_complexity 1 24 0 1 848 207 161 35 35 chr12 34580244 34580302 -86677228 + (TTTG)n Simple_repeat Simple_repeat 3 60 0 1 848 423 0 0 0 chr12 34580620 34580667 -86676863 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 848 205 350 48 40 chr12 34581334 34581459 -86676071 - L2c LINE L2 -2 3385 3260 1 848 1106 138 0 0 chr12 34581970 34582144 -86675386 - ORR1B1 LTR MaLR -220 174 1 1 848 6235 177 94 6 chr12 34582144 34583531 -86673999 - ORR1B1-int LTR MaLR 0 1509 1 1 848 2047 158 17 78 chr12 34583535 34583792 -86673738 - ORR1B1 LTR MaLR -8 386 140 1 848 189 0 0 0 chr12 34583792 34583813 -86673717 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 848 2047 158 17 78 chr12 34583813 34583966 -86673564 - ORR1B1 LTR MaLR -255 139 1 1 848 304 269 96 11 chr12 34584223 34584317 -86673213 - MLT1G LTR MaLR -16 473 372 1 848 362 379 93 51 chr12 34584339 34584673 -86672857 - MLT1G LTR MaLR -200 391 44 1 848 3066 68 31 10 chr12 34584700 34585115 -86672415 - L1_Mus1 LINE L1 0 6567 6144 1 848 1392 29 0 0 chr12 34585113 34585286 -86672244 - L1Md_F2 LINE L1 -2 6580 6408 1 848 1694 92 0 29 chr12 34585286 34585532 -86671998 - L1Md_F2 LINE L1 -430 6152 5914 1 848 852 160 87 23 chr12 34586589 34586762 -86670768 - B2_Mm2 SINE B2 -9 186 3 1 848 309 218 0 0 chr12 34586803 34586858 -86670672 + ID4 SINE ID 9 63 -20 1 848 4423 202 108 33 chr12 34587375 34588595 -86668935 - Lx7 LINE L1 -3139 2741 2058 1 848 198 0 0 0 chr12 34588595 34588617 -86668913 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 848 4423 174 70 45 chr12 34588617 34589016 -86668514 - Lx7 LINE L1 -3823 2057 1639 1 848 1591 158 10 3 chr12 34589011 34589303 -86668227 - Lx7 LINE L1 -6386 1342 1049 1 848 25 95 0 0 chr12 34589695 34589769 -86667761 + AT_rich Low_complexity Low_complexity 1 74 0 1 848 1106 64 7 0 chr12 34589855 34589995 -86667535 - B1_Mus1 SINE Alu -6 142 2 1 848 3163 53 2 8 chr12 34590086 34590484 -86667046 + MTA_Mm LTR MaLR 1 396 0 1 848 1002 214 127 50 chr12 34590571 34591145 -86666385 + RMER17C-int LTR ERVK 2607 3224 -14 1 848 561 55 0 0 chr12 34591262 34591335 -86666195 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 848 408 143 0 0 chr12 34591453 34591523 -86666007 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 848 696 280 67 26 chr12 34591523 34591717 -86665813 + B3 SINE B2 8 209 -7 1 848 34 24 0 0 chr12 34592445 34592486 -86665044 + AT_rich Low_complexity Low_complexity 1 41 0 1 848 311 282 52 15 chr12 34593003 34593204 -86664326 - L1ME1 LINE L1 -463 5981 5770 1 848 2610 54 0 0 chr12 34593352 34593683 -86663847 - L1Md_F2 LINE L1 0 6582 6252 1 848 21 36 0 0 chr12 34593845 34593873 -86663657 + AT_rich Low_complexity Low_complexity 1 28 0 1 848 1156 290 72 17 chr12 34594151 34594780 -86662750 + L1M2 LINE L1 4420 5109 -1034 1 848 1804 300 57 37 chr12 34594785 34595592 -86661938 + Lx9 LINE L1 6649 7471 -173 1 848 23 33 0 0 chr12 34595674 34595704 -86661826 + AT_rich Low_complexity Low_complexity 1 30 0 1 848 290 236 132 22 chr12 34595798 34595980 -86661550 + L1M2 LINE L1 5207 5408 -472 1 848 610 261 28 14 chr12 34595980 34596124 -86661406 + B1_Mur2 SINE Alu 3 148 -1 1 848 180 97 0 0 chr12 34596124 34596155 -86661375 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 848 411 282 46 60 chr12 34596161 34596417 -86661113 + L1_Mur1 LINE L1 5412 5660 -226 1 848 225 0 0 0 chr12 34596720 34596745 -86660785 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 848 1219 41 0 0 chr12 34596746 34596891 -86660639 - B1_Mus2 SINE Alu -2 145 1 1 848 9424 139 17 12 chr12 34597008 34598688 -86658842 + L1_Mur1 LINE L1 2498 4184 -1702 1 848 1512 295 104 32 chr12 34599208 34599803 -86657727 - Lx8 LINE L1 -2 7471 6834 1 848 324 0 0 0 chr12 34600297 34600333 -86657197 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 848 618 320 76 9 chr12 34600394 34600618 -86656912 - B4A SINE B4 -45 247 9 1 848 1041 87 0 0 chr12 34601545 34601695 -86655835 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 1 848 1104 96 0 20 chr12 34601696 34601845 -86655685 - B1_Mus2 SINE Alu -1 146 1 1 848 422 348 75 33 chr12 34602323 34602537 -86654993 - LTR16B1 LTR ERVL -71 409 187 1 848 284 320 28 95 chr12 34602714 34602966 -86654564 - L2a LINE L2 -153 3273 3039 1 849 194 244 183 0 chr12 34603072 34603154 -86654376 + L2 LINE L2 2418 2514 -905 1 849 2534 181 57 22 chr12 34603178 34603719 -86653811 + RLTR20B2 LTR ERVK 1 560 0 1 849 261 300 118 20 chr12 34603719 34603872 -86653658 + L2 LINE L2 2565 2732 -687 1 849 248 159 23 0 chr12 34604424 34604468 -86653062 + Charlie13a DNA Charlie 586 630 -884 1 849 273 288 41 33 chr12 34604815 34604937 -86652593 + L3b LINE CR1 9 131 -351 1 849 404 269 27 18 chr12 34605295 34605405 -86652125 + MER58B DNA MER1_type 231 341 0 1 849 238 262 23 60 chr12 34606918 34607019 -86650511 - RMER20B LTR ERVK -299 217 121 1 849 897 302 53 20 chr12 34607244 34607739 -86649791 + L1MB3 LINE L1 4715 5236 -910 1 849 236 220 0 0 chr12 34607935 34607994 -86649536 + L1MB3 LINE L1 5351 5409 -771 1 849 225 245 0 0 chr12 34608049 34608098 -86649432 + PB1D10 SINE Alu 43 91 -26 1 849 216 0 0 0 chr12 34608136 34608160 -86649370 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 1 849 955 308 57 30 chr12 34608160 34608660 -86648870 + L1MB3 LINE L1 5427 5942 -241 1 849 31 58 0 0 chr12 34609796 34609848 -86647682 + AT_rich Low_complexity Low_complexity 1 52 0 1 849 198 0 0 0 chr12 34610655 34610677 -86646853 + (A)n Simple_repeat Simple_repeat 1 22 0 1 849 648 132 0 0 chr12 34610966 34611072 -86646458 + (TCC)n Simple_repeat Simple_repeat 2 107 0 1 849 713 296 6 0 chr12 34611095 34611264 -86646266 - ID_B1 SINE B4 -43 181 12 1 849 23 0 0 0 chr12 34611526 34611549 -86645981 + AT_rich Low_complexity Low_complexity 1 23 0 1 849 21 0 0 0 chr12 34611973 34611994 -86645536 + AT_rich Low_complexity Low_complexity 1 21 0 1 849 225 292 0 0 chr12 34613538 34613603 -86643927 + GA-rich Low_complexity Low_complexity 3 67 0 1 849 1274 121 35 18 chr12 34614833 34615060 -86642470 - L1_Mus3 LINE L1 -1 6637 6407 1 849 1521 73 0 5 chr12 34615050 34615244 -86642286 + L1_Mus3 LINE L1 6203 6395 -243 1 849 711 24 0 0 chr12 34616783 34616868 -86640662 + L1Md_A LINE L1 6498 6582 0 1 849 725 262 46 59 chr12 34617641 34617860 -86639670 + B3 SINE B2 1 216 0 1 849 22 0 0 0 chr12 34618531 34618553 -86638977 + AT_rich Low_complexity Low_complexity 1 22 0 1 849 25 51 0 0 chr12 34618617 34618656 -86638874 + AT_rich Low_complexity Low_complexity 1 39 0 1 849 2391 30 86 0 chr12 34621137 34621406 -86636124 + RLTR10B LTR ERVK 1 292 0 1 849 360 111 0 0 chr12 34621598 34621652 -86635878 + (CTTA)n Simple_repeat Simple_repeat 2 55 0 1 849 657 149 85 69 chr12 34621749 34621879 -86635651 + B1_Mm SINE Alu 1 132 -15 1 849 202 205 0 0 chr12 34621889 34621928 -86635602 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 1 849 1511 265 89 32 chr12 34621968 34622506 -86635024 - Lx6 LINE L1 0 7460 6892 1 849 408 246 196 9 chr12 34622624 34622729 -86634801 - Helitron2Na_Mam RC Helitron? -1 323 210 1 849 727 88 0 17 chr12 34622729 34622844 -86634686 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 849 408 246 196 9 chr12 34622844 34622968 -86634562 - Helitron2Na_Mam RC Helitron? -115 209 52 1 849 479 17 0 16 chr12 34624377 34624438 -86633092 + (TTA)n Simple_repeat Simple_repeat 3 62 0 1 849 216 0 0 0 chr12 34624685 34624709 -86632821 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 849 21 0 0 0 chr12 34625052 34625073 -86632457 + AT_rich Low_complexity Low_complexity 1 21 0 1 849 301 295 39 0 chr12 34625647 34625725 -86631805 + ID4_ SINE ID 2 82 -1 1 849 234 0 0 0 chr12 34626460 34626486 -86631044 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 849 204 286 0 0 chr12 34629311 34629360 -86628170 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 849 291 313 54 13 chr12 34629490 34629567 -86627963 - L1MA6 LINE L1 -1477 5996 5913 1 849 849 173 201 0 chr12 34629567 34629746 -86627784 + B3 SINE B2 2 216 0 1 849 493 275 131 50 chr12 34629746 34630186 -86627344 - L1MA6 LINE L1 -362 5938 5473 1 849 710 103 0 8 chr12 34630204 34630322 -86627208 - L1_Mus4 LINE L1 0 6636 6520 1 849 244 272 60 13 chr12 34630623 34630719 -86626811 - L1M2 LINE L1 -714 5577 5472 1 849 1724 317 50 25 chr12 34630717 34631133 -86626397 - L1M2 LINE L1 -805 5338 4912 1 849 2152 173 48 0 chr12 34631133 34631509 -86626021 + ORR1B1 LTR MaLR 1 394 0 1 849 1724 317 50 25 chr12 34631509 34632057 -86625473 - L1M2 LINE L1 -1232 4911 4350 1 849 1067 246 0 0 chr12 34632067 34632282 -86625248 - B3 SINE B2 -1 215 1 1 849 567 346 19 19 chr12 34632291 34632500 -86625030 - B3 SINE B2 -6 210 2 1 849 527 278 113 0 chr12 34632535 34632668 -86624862 - B1_Mur1 SINE Alu 0 149 2 1 849 213 39 0 0 chr12 34632673 34632699 -86624831 + (T)n Simple_repeat Simple_repeat 1 26 0 1 849 1142 282 117 28 chr12 34633564 34634027 -86623503 + L2 LINE L2 2241 2744 -675 1 849 3628 20 5 0 chr12 34634154 34634547 -86622983 + MTA_Mm LTR MaLR 2 396 0 1 849 207 0 0 0 chr12 34634716 34634739 -86622791 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 849 279 243 14 0 chr12 34636710 34636780 -86620750 + T-rich Low_complexity Low_complexity 2 72 0 1 849 245 339 124 16 chr12 34637348 34637477 -86620053 - B1F SINE Alu -5 144 2 1 849 200 34 0 33 chr12 34637778 34637808 -86619722 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 1 849 21 0 0 0 chr12 34637808 34637829 -86619701 + AT_rich Low_complexity Low_complexity 1 21 0 1 849 437 136 0 80 chr12 34638389 34638501 -86619029 - L1_Mus4 LINE L1 0 6636 6534 1 849 291 85 0 161 chr12 34638521 34638577 -86618953 - Lx2 LINE L1 -226 6771 6725 1 849 729 150 0 0 chr12 34639235 34639415 -86618115 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 849 23 33 0 0 chr12 34641256 34641286 -86616244 + AT_rich Low_complexity Low_complexity 1 30 0 2 849 360 59 0 0 chr12 34641394 34641445 -86616085 + (A)n Simple_repeat Simple_repeat 1 51 0 2 849 208 274 0 0 chr12 34642250 34642301 -86615229 + G-rich Low_complexity Low_complexity 1 51 0 2 849 216 274 0 56 chr12 34642624 34642713 -86614817 + C-rich Low_complexity Low_complexity 1 84 0 2 849 23 54 0 0 chr12 34642721 34642758 -86614772 + GC_rich Low_complexity Low_complexity 1 37 0 2 849 30 45 0 0 chr12 34642975 34643019 -86614511 + GC_rich Low_complexity Low_complexity 1 44 0 2 849 342 147 0 0 chr12 34643079 34643147 -86614383 + (CGG)n Simple_repeat Simple_repeat 2 69 0 2 849 381 22 0 0 chr12 34645380 34645426 -86612104 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 849 393 102 0 0 chr12 34646815 34646874 -86610656 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 849 207 0 0 0 chr12 34648450 34648473 -86609057 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 2 849 471 18 0 0 chr12 34649145 34649201 -86608329 + (T)n Simple_repeat Simple_repeat 1 56 0 2 849 279 0 0 0 chr12 34649896 34649927 -86607603 + (T)n Simple_repeat Simple_repeat 1 31 0 2 849 573 115 0 0 chr12 34650448 34650535 -86606995 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 849 297 0 0 0 chr12 34651235 34651268 -86606262 + (CAA)n Simple_repeat Simple_repeat 3 35 0 2 849 432 0 0 0 chr12 34651268 34651316 -86606214 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 849 207 374 28 18 chr12 34658804 34658913 -86598617 - MIRc SINE MIR -74 194 85 2 849 412 312 49 7 chr12 34659238 34659380 -86598150 - B1F2 SINE Alu -1 148 1 2 849 209 261 170 7 chr12 34660737 34660872 -86596658 + MIR3 SINE MIR 42 198 -10 2 849 279 0 0 0 chr12 34662069 34662100 -86595430 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 2 849 234 0 98 0 chr12 34662509 34662550 -86594980 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2 849 216 188 0 0 chr12 34662573 34662621 -86594909 + A-rich Low_complexity Low_complexity 1 48 0 2 849 39 68 0 0 chr12 34662712 34662786 -86594744 + AT_rich Low_complexity Low_complexity 1 74 0 2 849 911 50 0 0 chr12 34665780 34665900 -86591630 - B1_Mus2 SINE Alu 0 147 28 2 849 241 317 70 47 chr12 34665957 34666086 -86591444 - MIRb SINE MIR -114 154 23 2 849 22 0 0 0 chr12 34666622 34666644 -86590886 + AT_rich Low_complexity Low_complexity 1 22 0 2 849 261 0 0 0 chr12 34667385 34667414 -86590116 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 849 292 217 21 21 chr12 34668611 34668705 -86588825 - L1MB7 LINE L1 -1 6183 6090 2 849 795 345 122 38 chr12 34668769 34669188 -86588342 + MLT2B3 LTR ERVL 8 461 -93 2 849 191 88 29 0 chr12 34669208 34669242 -86588288 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 849 417 20 0 0 chr12 34669374 34669424 -86588106 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 849 710 290 111 46 chr12 34669577 34670520 -86587010 - L1M4 LINE L1 -517 5667 4662 2 849 298 265 10 10 chr12 34670603 34670702 -86586828 + L1M4 LINE L1 4595 4693 -1453 2 849 345 100 0 0 chr12 34670730 34670780 -86586750 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 849 439 352 55 28 chr12 34672018 34672272 -86585258 + L1MEc LINE L1 62 322 -6078 2 849 350 296 7 34 chr12 34672670 34672817 -86584713 + L1MEc LINE L1 2014 2156 -4244 2 849 180 0 0 0 chr12 34673186 34673206 -86584324 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 849 211 344 10 10 chr12 34673400 34673497 -86584033 + CT-rich Low_complexity Low_complexity 5 101 0 2 849 198 71 0 0 chr12 34673498 34673526 -86584004 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 849 593 292 23 14 chr12 34673553 34673872 -86583658 - L1MA5 LINE L1 -380 5920 5536 2 849 993 81 0 0 chr12 34673950 34674086 -86583444 + (TTTC)n Simple_repeat Simple_repeat 2 137 0 2 849 1049 110 0 14 chr12 34674091 34674239 -86583291 - B1_Mus1 SINE Alu -2 146 1 2 849 251 331 32 32 chr12 34674475 34674600 -86582930 - L1MCb LINE L1 -5803 948 824 2 849 273 332 46 31 chr12 34674678 34674939 -86582591 - L1MCb LINE L1 -5618 427 163 2 849 1029 235 15 0 chr12 34675412 34675612 -86581918 - B3 SINE B2 -13 203 1 2 849 24 0 0 0 chr12 34675823 34675847 -86581683 + AT_rich Low_complexity Low_complexity 1 24 0 2 849 26 0 0 0 chr12 34675860 34675886 -86581644 + AT_rich Low_complexity Low_complexity 1 26 0 2 849 651 169 100 0 chr12 34675952 34676082 -86581448 - B1F SINE Alu -1 148 6 2 849 861 62 34 27 chr12 34676140 34676289 -86581241 - L1_Mus3 LINE L1 -4 6634 6485 2 849 233 246 0 15 chr12 34676382 34676448 -86581082 + L1M2 LINE L1 3691 3755 -2388 2 849 3421 167 181 20 chr12 34677126 34678005 -86579525 + RMER1B Other Other 43 1062 -4 2 849 1156 266 108 3 chr12 34678074 34678409 -86579121 - ORR1D2 LTR MaLR 0 370 1 2 849 831 124 35 58 chr12 34678625 34678796 -86578734 + L1Md_F3 LINE L1 6404 6570 -14 2 849 39536 4 0 0 chr12 34678849 34685402 -86572128 - L1Md_A LINE L1 0 6582 30 2 849 1733 282 36 44 chr12 34685518 34686175 -86571355 - Lx8 LINE L1 -6 7467 6816 2 849 1698 167 32 0 chr12 34686270 34686552 -86570978 + MTC LTR MaLR 1 291 -130 2 849 378 94 0 0 chr12 34686914 34686978 -86570552 + (T)n Simple_repeat Simple_repeat 1 64 0 2 849 832 194 7 0 chr12 34688119 34688258 -86569272 + B1_Mur1 SINE Alu 3 142 -7 2 849 195 204 0 0 chr12 34688273 34688322 -86569208 + A-rich Low_complexity Low_complexity 2 50 0 2 849 275 162 12 36 chr12 34688938 34689021 -86568509 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 849 5009 43 0 3 chr12 34689454 34690054 -86567476 - L1Md_F2 LINE L1 -12 6570 5973 2 849 1166 62 0 0 chr12 34690106 34690251 -86567279 - B1_Mus1 SINE Alu -2 146 2 2 849 22 70 0 0 chr12 34690344 34690387 -86567143 + AT_rich Low_complexity Low_complexity 1 43 0 2 849 233 119 0 0 chr12 34690433 34690475 -86567055 - Lx8 LINE L1 -9 7464 7423 2 849 274 280 30 105 chr12 34690540 34690671 -86566859 - MTE2a LTR MaLR -193 186 65 2 849 203 273 160 66 chr12 34690944 34691050 -86566480 + MIRm SINE MIR 81 196 -80 2 849 5619 37 13 6 chr12 34691348 34692033 -86565497 + L1Md_F2 LINE L1 5892 6581 -1 2 849 614 316 13 0 chr12 34693434 34693589 -86563941 - ID_B1 SINE B4 -3 221 65 2 849 1060 164 227 15 chr12 34693873 34694133 -86563397 - MTD LTR MaLR -10 409 95 2 849 362 194 81 10 chr12 34694220 34694319 -86563211 - MTD LTR MaLR -310 109 4 2 849 404 265 12 14 chr12 34694379 34694562 -86562968 + L1VL1 LINE L1 87 392 -6030 2 849 446 254 22 7 chr12 34694610 34694749 -86562781 + L1_Mus1 LINE L1 675 815 -5801 2 849 29880 105 10 13 chr12 34694746 34700626 -86556904 + L1_Mus1 LINE L1 725 6638 0 2 849 23 0 0 0 chr12 34701481 34701504 -86556026 + AT_rich Low_complexity Low_complexity 1 23 0 2 849 428 264 128 71 chr12 34701506 34701787 -86555743 + L1M5 LINE L1 3330 3626 -2520 2 849 383 262 0 0 chr12 34701895 34701979 -86555551 - B3 SINE B2 -132 84 1 2 849 1673 26 0 0 chr12 34702182 34702375 -86555155 - B2_Mm1a SINE B2 0 193 1 2 849 790 352 55 41 chr12 34702432 34702992 -86554538 + Lx8 LINE L1 6906 7473 0 2 849 255 210 0 0 chr12 34703079 34703141 -86554389 + MLT2B4 LTR ERVL 1 62 -494 2 849 527 283 0 80 chr12 34703146 34703249 -86554281 - B3A SINE B2 -58 140 40 2 849 1441 176 96 58 chr12 34703249 34703612 -86553918 - ORR1C1 LTR MaLR 0 378 2 2 849 527 283 0 80 chr12 34703612 34703658 -86553872 - B3A SINE B2 -159 39 3 2 849 4836 247 58 30 chr12 34703798 34705175 -86552355 + Lx7 LINE L1 5995 7410 -286 2 849 241 279 26 26 chr12 34705201 34705315 -86552215 + Lx7 LINE L1 7559 7672 -24 2 849 4728 82 0 0 chr12 34705316 34705920 -86551610 + L1_Mus1 LINE L1 5956 6559 -8 2 849 207 100 0 0 chr12 34705920 34705950 -86551580 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 2 849 3020 185 46 22 chr12 34706261 34706724 -86550806 + Lx3B LINE L1 6328 6811 -162 2 849 3440 23 5 0 chr12 34706724 34707118 -86550412 - MTA_Mm LTR MaLR 0 396 1 2 849 3020 185 46 22 chr12 34707118 34707283 -86550247 + Lx3B LINE L1 6812 6971 -2 2 849 24 0 0 0 chr12 34707314 34707338 -86550192 + AT_rich Low_complexity Low_complexity 1 24 0 2 849 1140 82 0 0 chr12 34707439 34707585 -86549945 - B1_Mus2 SINE Alu 0 147 2 2 849 686 61 17 17 chr12 34707862 34707979 -86549551 - L1Md_F2 LINE L1 -2 6580 6464 2 849 38449 21 5 6 chr12 34709243 34715373 -86542157 - L1Md_A LINE L1 0 6582 458 2 849 262 333 0 0 chr12 34717572 34717650 -86539880 + ID4_ SINE ID 4 81 -2 2 849 468 91 0 0 chr12 34717728 34717794 -86539736 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 849 21 0 0 0 chr12 34717884 34717905 -86539625 + AT_rich Low_complexity Low_complexity 1 21 0 2 849 258 32 0 0 chr12 34718254 34718285 -86539245 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 2 849 241 254 28 14 chr12 34719099 34719171 -86538359 + B3 SINE B2 3 75 -141 2 849 2074 127 66 28 chr12 34720481 34720845 -86536685 + Lx2 LINE L1 6618 6995 -2 2 849 435 316 63 68 chr12 34721588 34722076 -86535454 - L1MB3 LINE L1 -3 6180 5695 2 849 522 271 108 44 chr12 34722269 34722612 -86534918 - L1MB3 LINE L1 -627 5664 5277 2 849 353 314 16 0 chr12 34722654 34722778 -86534752 + ERVL-B4-int LTR ERVL 1944 2069 -3645 2 849 1583 292 76 51 chr12 34723049 34724071 -86533459 + Lx8 LINE L1 6426 7473 0 2 849 915 114 0 0 chr12 34725463 34725726 -86531804 + (CA)n Simple_repeat Simple_repeat 1 263 0 2 849 596 324 51 30 chr12 34725866 34726722 -86530808 - L1M2 LINE L1 -510 5787 4906 2 849 1453 230 48 53 chr12 34726726 34727169 -86530361 - RMER1C Other Other 0 1342 907 2 849 486 0 0 0 chr12 34727169 34727223 -86530307 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 849 1453 230 48 53 chr12 34727223 34727302 -86530228 - RMER1C Other Other -436 906 825 2 849 309 277 73 20 chr12 34728000 34728151 -86529379 - L1M2 LINE L1 -1213 4930 4772 2 849 236 277 92 46 chr12 34728157 34728244 -86529286 - RMER15 LTR ERVL -2 573 483 2 849 259 248 58 29 chr12 34728731 34728835 -86528695 + Lx8 LINE L1 7180 7286 -187 3 849 210 349 0 43 chr12 34728898 34728967 -86528563 - RSINE1 SINE B4 -93 72 7 3 849 393 58 0 0 chr12 34729184 34729236 -86528294 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 849 335 313 125 12 chr12 34729239 34729407 -86528123 - Lx8 LINE L1 -153 7320 7134 3 849 342 0 0 0 chr12 34729509 34729547 -86527983 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 849 267 222 0 0 chr12 34729548 34729611 -86527919 - Lx8 LINE L1 -529 6944 6882 3 849 351 294 39 31 chr12 34729690 34729820 -86527710 - Lx8 LINE L1 -704 6769 6639 3 849 307 333 0 20 chr12 34729872 34729970 -86527560 - ID4 SINE ID -55 97 2 3 849 262 272 24 36 chr12 34731834 34731918 -86525612 - ID_B1 SINE B4 -2 222 140 3 849 799 263 33 28 chr12 34732054 34732269 -86525261 - B3 SINE B2 0 216 1 3 849 216 86 0 0 chr12 34732585 34732620 -86524910 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 3 849 205 182 0 0 chr12 34733237 34733270 -86524260 + polypyrimidine Low_complexity Low_complexity 2 34 0 3 849 216 97 0 0 chr12 34733523 34733554 -86523976 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 849 612 83 0 0 chr12 34733977 34734073 -86523457 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 850 207 69 0 0 chr12 34735007 34735036 -86522494 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 850 297 0 0 0 chr12 34735037 34735070 -86522460 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 850 701 152 71 8 chr12 34736384 34736510 -86521020 + B1_Mus2 SINE Alu 2 135 -12 3 850 24 32 0 0 chr12 34738498 34738529 -86519001 + AT_rich Low_complexity Low_complexity 1 31 0 3 850 231 36 0 0 chr12 34738655 34738683 -86518847 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 3 850 220 337 118 17 chr12 34739398 34739576 -86517954 + MIRc SINE MIR 45 240 -28 3 850 271 259 0 0 chr12 34739595 34739653 -86517877 - PB1D10 SINE Alu -51 66 9 3 850 240 214 17 51 chr12 34739606 34739665 -86517865 - B4A SINE B4 -152 140 84 3 850 491 304 116 20 chr12 34739809 34740007 -86517523 - ID_B1 SINE B4 -3 221 5 3 850 442 325 6 48 chr12 34740038 34740206 -86517324 - Lx8 LINE L1 -732 6741 6581 3 850 277 274 139 66 chr12 34740271 34740408 -86517122 + B1F SINE Alu 3 149 0 3 850 1087 118 137 10 chr12 34740834 34741031 -86516499 + URR1B DNA MER1_type 3 224 -1 3 850 917 170 14 5 chr12 34741414 34741627 -86515903 + Lx4B LINE L1 5950 6164 -894 3 850 8264 19 1 0 chr12 34741649 34742907 -86514623 - L1Md_A LINE L1 0 6582 5324 3 850 1623 153 3 30 chr12 34742915 34743218 -86514312 + Lx4B LINE L1 6177 6471 -587 3 850 530 299 32 59 chr12 34743401 34743789 -86513741 + L1ME2 LINE L1 5699 6082 -91 3 850 1433 196 104 39 chr12 34743856 34744270 -86513260 + RMER10A LTR ERVL 1 441 -1 3 850 419 282 156 76 chr12 34744699 34744845 -86512685 + MLT1D LTR MaLR 202 351 -154 3 850 207 0 0 0 chr12 34744845 34744868 -86512662 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 3 850 419 282 156 76 chr12 34744868 34744997 -86512533 + MLT1D LTR MaLR 352 499 -6 3 850 16904 194 73 24 chr12 34747149 34750680 -86506850 + L1_Mur3 LINE L1 892 4633 -1247 3 850 222 37 0 0 chr12 34750680 34750707 -86506823 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 850 16904 191 75 25 chr12 34750707 34751795 -86505735 + L1_Mur3 LINE L1 4634 5735 -145 3 850 33720 44 14 0 chr12 34751796 34757628 -86499902 + Lx6 LINE L1 1 5589 -297 3 850 8932 9 0 0 chr12 34757628 34758624 -86498906 + L1Md_T LINE L1 5587 6582 0 3 850 33720 245 48 98 chr12 34758624 34760088 -86497442 + Lx6 LINE L1 5590 7437 -26 3 850 367 317 9 37 chr12 34760166 34760382 -86497148 + L1_Mur3 LINE L1 1667 1876 -4004 3 850 180 0 0 0 chr12 34763492 34763512 -86494018 + (A)n Simple_repeat Simple_repeat 1 20 0 3 850 689 102 0 9 chr12 34764108 34764217 -86493313 + (TTCC)n Simple_repeat Simple_repeat 4 111 0 3 850 357 24 0 0 chr12 34764802 34764844 -86492686 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 850 279 294 51 71 chr12 34767162 34767236 -86490294 - BLACKJACK DNA AcHobo -27 2917 2843 3 850 2855 46 14 0 chr12 34767236 34767585 -86489945 + IAPEY2_LTR LTR ERVK 1 354 -3 3 850 279 294 51 71 chr12 34767585 34767763 -86489767 - BLACKJACK DNA AcHobo -102 2842 2670 3 850 321 269 31 31 chr12 34767765 34767861 -86489669 + ORR1E LTR MaLR 4 99 -260 3 850 419 296 20 5 chr12 34767860 34767981 -86489549 + ORR1E LTR MaLR 257 405 -14 3 850 342 0 0 0 chr12 34768193 34768231 -86489299 + (T)n Simple_repeat Simple_repeat 1 38 0 3 850 621 324 46 30 chr12 34768493 34769059 -86488471 + L1ME1 LINE L1 5406 5980 -199 3 850 331 267 195 6 chr12 34769499 34769798 -86487732 + L1MC4a LINE L1 6197 6560 -1482 3 850 363 96 0 0 chr12 34769800 34769852 -86487678 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 850 194 91 68 0 chr12 34771979 34772023 -86485507 + T-rich Low_complexity Low_complexity 2 48 0 3 850 369 340 89 45 chr12 34772630 34772876 -86484654 + MIRb SINE MIR 1 257 -11 3 850 185 262 0 0 chr12 34772840 34772882 -86484648 + L2c LINE L2 3337 3378 -9 3 850 3256 29 0 0 chr12 34772926 34773308 -86484222 - L1Md_A LINE L1 0 6582 6201 3 850 580 227 89 26 chr12 34773671 34773861 -86483669 - B3 SINE B2 -11 205 4 3 850 258 239 0 27 chr12 34773989 34774062 -86483468 + A-rich Low_complexity Low_complexity 5 75 0 3 850 324 48 0 0 chr12 34774669 34774711 -86482819 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 3 850 1534 256 16 45 chr12 34775074 34775427 -86482103 - ORR1D1 LTR MaLR 0 374 27 3 850 3143 22 14 0 chr12 34775427 34775796 -86481734 - L1Md_F2 LINE L1 -2 6580 6207 3 850 1534 256 16 45 chr12 34775796 34775822 -86481708 - ORR1D1 LTR MaLR -348 26 6 3 850 261 313 93 25 chr12 34776465 34776583 -86480947 - Charlie18a DNA MER1_type -184 158 33 3 850 564 29 0 0 chr12 34776687 34776757 -86480773 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 850 22 0 0 0 chr12 34777095 34777117 -86480413 + AT_rich Low_complexity Low_complexity 1 22 0 3 850 440 261 64 15 chr12 34777241 34777443 -86480087 - L1M3 LINE L1 -366 5823 5612 3 850 414 0 0 0 chr12 34777457 34777503 -86480027 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 850 217 174 22 0 chr12 34777607 34777653 -86479877 - B4 SINE B4 -245 47 1 3 850 330 279 0 44 chr12 34778222 34778312 -86479218 + MER45A DNA Tip100 52 137 -41 3 850 462 18 0 0 chr12 34778314 34778369 -86479161 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 850 327 25 0 0 chr12 34778789 34778829 -86478701 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 3 850 248 85 0 41 chr12 34778924 34778973 -86478557 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3 850 486 325 68 6 chr12 34778988 34779149 -86478381 - MER45A DNA Tip100 0 178 8 3 850 213 319 0 14 chr12 34779497 34779567 -86477963 + CT-rich Low_complexity Low_complexity 3 71 0 3 850 22 0 0 0 chr12 34779949 34779971 -86477559 + AT_rich Low_complexity Low_complexity 1 22 0 3 850 751 159 11 33 chr12 34782243 34782425 -86475105 + T-rich Low_complexity Low_complexity 2 179 0 3 850 25 0 0 0 chr12 34784246 34784271 -86473259 + AT_rich Low_complexity Low_complexity 1 25 0 3 850 22 70 0 0 chr12 34784317 34784360 -86473170 + AT_rich Low_complexity Low_complexity 1 43 0 3 850 294 98 0 0 chr12 34784362 34784413 -86473117 + (T)n Simple_repeat Simple_repeat 1 51 0 3 850 254 333 11 67 chr12 34784433 34784523 -86473007 - MT2B2 LTR ERVL -343 241 157 3 850 207 0 0 0 chr12 34785208 34785231 -86472299 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 850 340 260 19 9 chr12 34788086 34788191 -86469339 + GA-rich Low_complexity Low_complexity 3 108 0 3 850 327 191 0 0 chr12 34789196 34789264 -86468266 + GA-rich Low_complexity Low_complexity 3 70 0 3 850 1132 68 0 26 chr12 34790653 34790804 -86466726 + B1_Mm SINE Alu 1 147 0 3 850 212 167 0 0 chr12 34790804 34790846 -86466684 + A-rich Low_complexity Low_complexity 1 42 0 3 850 304 315 0 0 chr12 34792582 34792674 -86464856 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 850 262 308 13 0 chr12 34793276 34793354 -86464176 - L1M5 LINE L1 -503 5737 5659 3 850 375 339 196 26 chr12 34793540 34794070 -86463460 - L1M5 LINE L1 -2157 3989 3370 3 850 203 264 0 19 chr12 34795167 34795221 -86462309 + CT-rich Low_complexity Low_complexity 3 55 0 3 850 332 330 0 94 chr12 34795608 34795809 -86461721 - L1MC3 LINE L1 0 7785 7604 3 850 447 78 0 0 chr12 34798016 34798080 -86459450 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 850 943 302 36 50 chr12 34798329 34798691 -86458839 - ORR1E LTR MaLR -2 357 1 3 850 254 145 39 26 chr12 34801935 34802013 -86455517 + CT-rich Low_complexity Low_complexity 6 84 0 3 850 383 182 18 26 chr12 34802225 34802338 -86455192 + CT-rich Low_complexity Low_complexity 1 112 0 3 850 256 272 26 128 chr12 34802343 34802499 -86455031 - MER121 Unknown Unknown -195 217 78 3 850 14315 63 0 2 chr12 34802916 34804853 -86452677 + L1_Mm LINE L1 3741 5673 -210 3 850 711 56 0 0 chr12 34804853 34804961 -86452569 + L1Md_F2 LINE L1 6473 6580 -2 3 850 189 287 200 11 chr12 34804971 34805066 -86452464 + MIRb SINE MIR 125 237 -31 3 850 798 73 73 0 chr12 34805163 34805286 -86452244 - Lx3B LINE L1 -960 6013 5882 3 850 1123 164 9 46 chr12 34805288 34805506 -86452024 + Lx3B LINE L1 6763 6972 -1 3 850 218 56 28 0 chr12 34805706 34805742 -86451788 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 3 850 23 33 0 0 chr12 34806674 34806704 -86450826 + AT_rich Low_complexity Low_complexity 1 30 0 3 850 302 98 20 0 chr12 34806737 34806788 -86450742 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 850 622 296 130 82 chr12 34806831 34807100 -86450430 - B4 SINE B4 0 292 11 3 850 3210 43 0 13 chr12 34807494 34807891 -86449639 - L1Md_F2 LINE L1 -12 6570 6179 3 850 24 0 0 0 chr12 34810065 34810089 -86447441 + AT_rich Low_complexity Low_complexity 1 24 0 3 850 222 301 71 51 chr12 34810574 34810672 -86446858 + MER5A DNA MER1_type 1 100 -89 3 850 1046 213 9 0 chr12 34811227 34811448 -86446082 - Lx4B LINE L1 -746 6312 6090 3 850 2371 231 74 13 chr12 34811440 34812075 -86445455 + Lx2B LINE L1 6327 7000 0 3 850 285 329 41 0 chr12 34812638 34812711 -86444819 - Charlie12 DNA MER1_type -2791 82 7 4 850 261 267 154 0 chr12 34813206 34813299 -86444231 + B1F SINE Alu 2 106 -43 4 850 311 214 14 14 chr12 34813375 34813521 -86444009 + GA-rich Low_complexity Low_complexity 1 146 0 4 850 23277 19 0 0 chr12 34813521 34816271 -86441259 + MERVL-int LTR ERVL 2621 5371 -114 4 850 371 111 26 53 chr12 34816271 34816347 -86441183 + ORR1A3-int LTR MaLR 567 640 -1323 4 850 302 0 0 0 chr12 34816347 34816385 -86441145 + MERVL-int LTR ERVL 5448 5485 0 4 850 4380 16 0 12 chr12 34816385 34816884 -86440646 + MT2_Mm LTR ERVL 1 493 0 4 850 777 11 0 0 chr12 34816884 34816974 -86440556 + (GGGAA)n Simple_repeat Simple_repeat 3 92 0 4 850 180 0 0 0 chr12 34818504 34818524 -86439006 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 850 446 286 158 47 chr12 34819594 34819891 -86437639 + MER63D DNA AcHobo 1 330 -731 4 850 586 304 131 35 chr12 34819914 34820204 -86437326 - MLT1A0 LTR MaLR -47 318 1 4 850 216 97 0 0 chr12 34820213 34820244 -86437286 + (T)n Simple_repeat Simple_repeat 1 31 0 4 850 2365 41 10 7 chr12 34820414 34820786 -86436744 - L1_Mus1 LINE L1 0 6567 6270 4 850 253 111 0 82 chr12 34820786 34820808 -86436722 + T-rich Low_complexity Low_complexity 2 23 0 4 850 1385 140 9 5 chr12 34821788 34822011 -86435519 + URR1A DNA MER1_type 1 224 -2 4 850 234 0 0 0 chr12 34822036 34822062 -86435468 + (T)n Simple_repeat Simple_repeat 1 26 0 4 850 441 328 54 19 chr12 34822473 34822678 -86434852 - MER20 DNA MER1_type -5 214 3 4 850 249 273 122 41 chr12 34822745 34822917 -86434613 - MIR SINE MIR -1 267 78 4 850 5949 3 0 0 chr12 34823052 34823745 -86433785 + L1Md_A LINE L1 4894 5586 -297 4 850 9062 3 0 0 chr12 34823745 34824741 -86432789 + L1Md_A LINE L1 5587 6582 0 4 850 28 71 0 0 chr12 34824749 34824805 -86432725 + AT_rich Low_complexity Low_complexity 1 56 0 4 850 4846 42 3 3 chr12 34824954 34825546 -86431984 + L1Md_F2 LINE L1 5988 6579 -3 4 850 637 285 103 14 chr12 34826156 34826526 -86431004 - L1MA4 LINE L1 -128 6172 5770 4 850 198 0 0 0 chr12 34826776 34826798 -86430732 + (TCC)n Simple_repeat Simple_repeat 1 22 0 4 850 270 0 0 0 chr12 34826843 34826873 -86430657 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 850 327 105 58 0 chr12 34827649 34827735 -86429795 + A-rich Low_complexity Low_complexity 2 92 0 4 850 703 268 39 0 chr12 34829230 34829383 -86428147 - RSINE1 SINE B4 -4 161 3 4 850 594 0 0 0 chr12 34830371 34830437 -86427093 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 850 351 0 0 0 chr12 34832508 34832547 -86424983 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 850 2049 79 10 30 chr12 34833103 34833403 -86424127 - L1_Mus3 LINE L1 -6 6632 6339 4 850 4097 96 112 0 chr12 34833403 34834162 -86423368 + L1_Mus3 LINE L1 5490 6330 -306 4 850 398 302 34 0 chr12 34834239 34834358 -86423172 + RSINE1 SINE B4 2 124 -41 4 850 23 0 0 0 chr12 34834752 34834775 -86422755 + AT_rich Low_complexity Low_complexity 1 23 0 4 850 448 315 106 11 chr12 34834794 34835067 -86422463 - L1MA6 LINE L1 -24 6276 5978 4 850 414 0 0 0 chr12 34836557 34836603 -86420927 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 850 28 48 0 0 chr12 34837022 34837064 -86420466 + AT_rich Low_complexity Low_complexity 1 42 0 4 850 462 319 54 10 chr12 34837682 34837885 -86419645 + L2 LINE L2 2365 2576 -843 4 850 271 358 0 10 chr12 34838255 34838351 -86419179 + MER3 DNA MER1_type 9 103 -106 4 850 220 269 39 0 chr12 34839237 34839289 -86418241 - ID4_ SINE ID -14 69 16 4 850 582 15 0 0 chr12 34839660 34839727 -86417803 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 850 267 366 9 160 chr12 34841978 34842074 -86415456 + ID_B1 SINE B4 24 219 -5 4 850 325 358 30 7 chr12 34842074 34842209 -86415321 + B1F SINE Alu 7 144 -5 4 850 846 200 7 0 chr12 34842689 34842834 -86414696 + B1_Mus1 SINE Alu 2 147 -1 4 850 997 44 0 49 chr12 34842905 34843049 -86414481 - B1_Mus1 SINE Alu 0 148 12 4 850 316 239 15 0 chr12 34843043 34843110 -86414420 + B1_Mur3 SINE Alu 76 143 -6 4 850 784 190 80 6 chr12 34845340 34845515 -86412015 + MER5A DNA MER1_type 1 188 -1 4 850 253 196 20 0 chr12 34845933 34845984 -86411546 + ORR1E LTR MaLR 98 149 -210 4 850 1226 47 0 7 chr12 34846333 34846482 -86411048 - B1_Mus1 SINE Alu 0 148 1 4 850 266 329 23 81 chr12 34846625 34846797 -86410733 - MER104 DNA Tc2 -17 164 3 4 850 23 54 0 0 chr12 34847687 34847724 -86409806 + AT_rich Low_complexity Low_complexity 1 37 0 4 850 650 302 163 20 chr12 34847947 34848085 -86409445 - L1M3 LINE L1 -1763 4377 4234 4 850 396 0 0 0 chr12 34848085 34848129 -86409401 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 850 650 302 163 20 chr12 34848129 34848537 -86408993 - L1M3 LINE L1 -1907 4233 3753 4 850 369 0 0 0 chr12 34848860 34848901 -86408629 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 4 850 345 326 60 25 chr12 34848905 34849106 -86408424 - ID_B1 SINE B4 -12 212 5 4 850 596 229 27 40 chr12 34850144 34850294 -86407236 - B1F2 SINE Alu -1 148 1 4 850 263 28 28 0 chr12 34855202 34855238 -86402292 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4 850 50 0 0 0 chr12 34855488 34855538 -86401992 + AT_rich Low_complexity Low_complexity 1 50 0 4 850 817 265 97 120 chr12 34856827 34857272 -86400258 + MTD LTR MaLR 4 409 -12 4 850 732 226 94 10 chr12 34857738 34857930 -86399600 - B3 SINE B2 -8 208 1 4 850 21 0 0 0 chr12 34858522 34858543 -86398987 + AT_rich Low_complexity Low_complexity 1 21 0 4 850 275 314 62 21 chr12 34858543 34858784 -86398746 + L1MC4a LINE L1 6788 7038 -844 4 850 22 35 0 0 chr12 34859247 34859276 -86398254 + AT_rich Low_complexity Low_complexity 1 29 0 4 850 1145 57 7 0 chr12 34859284 34859424 -86398106 + B1_Mus1 SINE Alu 2 142 -6 4 850 213 65 0 0 chr12 34860481 34860512 -86397018 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 850 254 250 0 0 chr12 34860519 34860567 -86396963 - B1F SINE Alu -14 135 88 4 850 374 349 48 21 chr12 34860575 34860771 -86396759 - MTEa LTR MaLR -8 371 147 4 850 454 45 15 0 chr12 34860922 34860989 -86396541 - L1_Mur2 LINE L1 -2166 3711 3644 4 850 1793 145 93 14 chr12 34860994 34861358 -86396172 + Lx2 LINE L1 6599 6991 -6 4 850 195 333 85 45 chr12 34862139 34862340 -86395190 - L2 LINE L2 -341 3078 2870 4 850 1546 118 89 20 chr12 34862347 34862661 -86394869 - Lx3B LINE L1 -2 7007 6655 4 850 414 0 0 0 chr12 34863273 34863319 -86394211 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 850 230 270 0 39 chr12 34864140 34864217 -86393313 - L1M2 LINE L1 -464 5827 5754 4 850 333 118 0 0 chr12 34864356 34864407 -86393123 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 4 850 343 81 46 11 chr12 34864754 34864841 -86392689 + (TTTTG)n Simple_repeat Simple_repeat 2 91 0 4 851 602 275 141 11 chr12 34866763 34866954 -86390576 - B3 SINE B2 0 216 1 4 851 333 0 0 0 chr12 34866961 34866998 -86390532 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 4 851 320 119 44 10 chr12 34867000 34867073 -86390457 - B1_Mm SINE Alu -6 141 38 4 851 1219 61 0 0 chr12 34867085 34867233 -86390297 - B1_Mus1 SINE Alu 0 148 1 4 851 25 31 0 0 chr12 34867279 34867311 -86390219 + AT_rich Low_complexity Low_complexity 1 32 0 4 851 522 43 0 0 chr12 34867998 34868067 -86389463 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 851 217 339 51 25 chr12 34868730 34868848 -86388682 - MIRb SINE MIR -106 162 42 4 851 535 227 63 90 chr12 34869103 34869292 -86388238 - B3A SINE B2 -14 184 1 4 851 335 256 260 4 chr12 34869680 34869911 -86387619 + B4A SINE B4 3 292 0 4 851 507 33 0 0 chr12 34869921 34869982 -86387548 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 851 590 193 17 6 chr12 34869982 34870159 -86387371 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 851 265 244 61 0 chr12 34870899 34870981 -86386549 + B3A SINE B2 71 157 -41 4 851 396 390 30 8 chr12 34871088 34871354 -86386176 + L1M5 LINE L1 5369 5640 -484 4 851 734 276 10 35 chr12 34871798 34872001 -86385529 - B3 SINE B2 -17 199 2 4 851 437 329 78 44 chr12 34872503 34872856 -86384674 + ORR1E LTR MaLR 28 374 0 4 851 244 310 108 52 chr12 34873402 34873596 -86383934 - MIR SINE MIR -30 232 28 4 851 1397 195 62 7 chr12 34874190 34874479 -86383051 + Lx5 LINE L1 6192 6496 -554 4 851 1736 236 88 5 chr12 34874480 34874898 -86382632 + Lx5 LINE L1 6598 7050 0 4 851 471 157 0 0 chr12 34875711 34875800 -86381730 + GA-rich Low_complexity Low_complexity 3 91 0 4 851 203 151 0 54 chr12 34876531 34876587 -86380943 + T-rich Low_complexity Low_complexity 1 53 0 4 851 512 58 11 22 chr12 34876677 34876766 -86380764 - L1Md_F2 LINE L1 0 6582 6495 4 851 2752 56 0 0 chr12 34876767 34877143 -86380387 + L1_Mm LINE L1 2006 2381 -3502 4 851 1568 205 50 56 chr12 34877858 34878215 -86379315 + ORR1B2 LTR MaLR 5 359 -8 4 851 23 0 0 0 chr12 34878452 34878475 -86379055 + AT_rich Low_complexity Low_complexity 1 23 0 4 851 236 333 54 22 chr12 34879110 34879202 -86378328 + Arthur1A DNA Tip100 4 98 -79 4 851 381 310 50 28 chr12 34880149 34880328 -86377202 + MLT1A0 LTR MaLR 19 201 -164 4 851 9733 73 18 18 chr12 34880328 34881841 -86375689 - MusHAL1 LINE L1 -1198 1514 2 4 851 213 39 0 0 chr12 34882850 34882876 -86374654 + (T)n Simple_repeat Simple_repeat 1 26 0 4 851 1127 83 0 0 chr12 34882876 34883021 -86374509 - B1_Mus2 SINE Alu 0 147 3 4 851 531 336 50 65 chr12 34883466 34883803 -86373727 - MLT1A LTR MaLR -34 340 9 4 851 183 156 0 0 chr12 34888313 34888345 -86369185 + A-rich Low_complexity Low_complexity 2 33 0 4 851 24 53 0 0 chr12 34890416 34890454 -86367076 + AT_rich Low_complexity Low_complexity 1 38 0 5 851 346 235 118 0 chr12 34891864 34891966 -86365564 - MER2 DNA MER2_type -119 226 113 5 851 5594 214 63 4 chr12 34892126 34892140 -86365390 + Lx9 LINE L1 6327 6340 -1304 5 851 1113 88 0 0 chr12 34892140 34892288 -86365242 - B1_Mus1 SINE Alu 0 148 1 5 851 5594 214 63 4 chr12 34892288 34893374 -86364156 + Lx9 LINE L1 6341 7489 -155 5 851 453 116 0 0 chr12 34893374 34893443 -86364087 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 851 5594 214 63 4 chr12 34893443 34893586 -86363944 + Lx9 LINE L1 7490 7643 -1 5 851 198 320 90 39 chr12 34894192 34894270 -86363260 + MIRb SINE MIR 2 83 -185 5 851 749 200 44 0 chr12 34894357 34894492 -86363038 - B1_Mur4 SINE Alu -9 141 1 5 851 24 0 0 0 chr12 34894609 34894633 -86362897 + AT_rich Low_complexity Low_complexity 1 24 0 5 851 308 339 94 85 chr12 34895105 34895424 -86362106 - ORR1E LTR MaLR -20 339 18 5 851 446 324 110 40 chr12 34895504 34895732 -86361798 + B4A SINE B4 47 290 -2 5 851 278 106 21 0 chr12 34895935 34895982 -86361548 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 5 851 778 236 169 39 chr12 34895986 34896317 -86361213 - ORR1D1 LTR MaLR 0 374 1 5 851 455 206 20 49 chr12 34896317 34896419 -86361111 - ORR1D1-int LTR MaLR 0 1370 1272 5 851 3702 211 62 47 chr12 34896399 34897300 -86360230 - ORR1D1-int LTR MaLR -455 915 1 5 851 851 217 242 3 chr12 34897300 34897601 -86359929 - ORR1D1 LTR MaLR 0 374 2 5 851 190 273 119 20 chr12 34897911 34898012 -86359518 + L2c LINE L2 3273 3383 -4 5 851 22 0 0 0 chr12 34898566 34898588 -86358942 + AT_rich Low_complexity Low_complexity 1 22 0 5 851 333 0 0 0 chr12 34899169 34899206 -86358324 + (TATG)n Simple_repeat Simple_repeat 2 38 0 5 851 222 250 0 56 chr12 34899249 34899321 -86358209 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 5 851 231 271 82 0 chr12 34899539 34899624 -86357906 + MER103 DNA DNA 19 110 -56 5 851 219 329 13 0 chr12 34900469 34900548 -86356982 + CT-rich Low_complexity Low_complexity 1 80 0 5 851 234 344 64 24 chr12 34901757 34901882 -86355648 - MIRc SINE MIR -97 171 42 5 851 326 93 37 0 chr12 34902208 34902262 -86355268 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 5 851 24 32 0 0 chr12 34904340 34904371 -86353159 + AT_rich Low_complexity Low_complexity 1 31 0 5 851 27 0 0 0 chr12 34907031 34907058 -86350472 + AT_rich Low_complexity Low_complexity 1 27 0 5 851 256 341 89 0 chr12 34907236 34907359 -86350171 + MLT1A1 LTR MaLR 1 134 -274 5 851 21 0 0 0 chr12 34907952 34907973 -86349557 + AT_rich Low_complexity Low_complexity 1 21 0 5 851 458 357 88 49 chr12 34909382 34909789 -86347741 + L2 LINE L2 1152 1574 -1845 5 851 1428 221 54 18 chr12 34909968 34910300 -86347230 - Lx5 LINE L1 0 7050 6707 5 851 278 359 19 0 chr12 34910315 34910418 -86347112 + MLT1A1 LTR MaLR 51 155 -253 5 851 435 134 0 0 chr12 34910431 34910498 -86347032 + RLTR26 LTR ERVK 1 67 -575 5 851 1836 146 93 126 chr12 34910499 34910960 -86346570 + RLTR26 LTR ERVK 197 642 0 5 851 252 320 52 74 chr12 34911600 34911735 -86345795 + ORR1E LTR MaLR 1 132 -227 5 851 1922 157 3 36 chr12 34911840 34912177 -86345353 + ORR1A3 LTR MaLR 1 326 0 5 851 294 245 135 58 chr12 34912569 34912673 -86344857 + PB1D10 SINE Alu 5 116 -1 5 851 216 136 50 17 chr12 34912699 34912759 -86344771 + GA-rich Low_complexity Low_complexity 2 63 0 5 851 655 235 0 29 chr12 34912854 34912990 -86344540 + B1_Mur3 SINE Alu 11 142 -7 5 851 486 0 0 0 chr12 34912993 34913047 -86344483 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 851 2263 155 15 23 chr12 34913850 34914247 -86343283 + ORR1B1 LTR MaLR 1 394 0 5 851 612 145 0 0 chr12 34915412 34915529 -86342001 + (GA)n Simple_repeat Simple_repeat 2 118 0 5 851 348 83 0 0 chr12 34917186 34917234 -86340296 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 851 1140 109 0 0 chr12 34918811 34918986 -86338544 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 5 851 1070 72 0 0 chr12 34918986 34919124 -86338406 - B1_Mus1 SINE Alu -10 138 1 5 851 23 33 0 0 chr12 34919576 34919606 -86337924 + AT_rich Low_complexity Low_complexity 1 30 0 5 851 351 243 133 57 chr12 34919803 34920104 -86337426 + L1MEg LINE L1 1208 1531 -4711 5 851 230 330 107 0 chr12 34920142 34920245 -86337285 + L1MEg LINE L1 1540 1653 -4589 5 851 189 116 71 14 chr12 34920334 34920404 -86337126 + CT-rich Low_complexity Low_complexity 1 74 0 5 851 23 0 0 0 chr12 34920508 34920531 -86336999 + AT_rich Low_complexity Low_complexity 1 23 0 5 851 440 312 115 60 chr12 34920559 34921046 -86336484 + L1MEg LINE L1 2736 3249 -2897 5 851 738 34 0 0 chr12 34921331 34921420 -86336110 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 851 1716 223 42 12 chr12 34921609 34922009 -86335521 - MTD LTR MaLR 0 419 8 5 851 2229 281 81 14 chr12 34922116 34922891 -86334639 + Lx8 LINE L1 6428 7254 -219 5 851 302 336 56 49 chr12 34923117 34923261 -86334269 + L1MEe LINE L1 324 468 -4386 5 851 216 210 194 39 chr12 34923316 34923445 -86334085 + B1_Mur3 SINE Alu 1 149 0 5 851 333 0 0 0 chr12 34923450 34923487 -86334043 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 851 389 330 9 9 chr12 34923883 34923999 -86333531 + B1F SINE Alu 26 141 -8 5 851 543 43 0 0 chr12 34924473 34924543 -86332987 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 851 1943 25 4 8 chr12 34924779 34925016 -86332514 - L1Md_F2 LINE L1 -11 6571 6336 5 851 652 131 71 104 chr12 34925236 34925390 -86332140 + B1_Mur4 SINE Alu 2 150 0 5 851 224 170 0 19 chr12 34925394 34925448 -86332082 + A-rich Low_complexity Low_complexity 2 54 0 5 851 399 176 18 27 chr12 34925682 34925793 -86331737 + CT-rich Low_complexity Low_complexity 3 112 0 5 851 589 169 15 8 chr12 34925857 34925988 -86331542 + CT-rich Low_complexity Low_complexity 3 134 0 5 851 579 288 118 48 chr12 34926080 34926798 -86330732 - L1M4 LINE L1 -4713 2389 1498 5 851 657 284 56 104 chr12 34926825 34926855 -86330675 - 7SK RNA RNA -52 279 248 5 851 263 71 24 0 chr12 34926855 34926897 -86330633 + (TTG)n Simple_repeat Simple_repeat 3 45 0 5 851 657 284 56 104 chr12 34926897 34927153 -86330377 - 7SK RNA RNA -84 247 7 5 851 320 185 53 21 chr12 34927390 34927484 -86330046 - L1M4 LINE L1 -5583 1321 1225 5 851 691 311 135 44 chr12 34927554 34928169 -86329361 - L1M4 LINE L1 -5813 1091 421 5 851 316 331 160 27 chr12 34928225 34928563 -86328967 + L1ME3B LINE L1 5555 5937 -303 5 851 21 0 0 0 chr12 34928815 34928836 -86328694 + AT_rich Low_complexity Low_complexity 1 21 0 5 851 559 196 10 10 chr12 34928950 34929053 -86328477 + B1_Mur2 SINE Alu 1 103 -46 5 851 294 257 68 103 chr12 34928961 34929078 -86328452 + MT2B LTR ERVL 176 288 -313 5 851 447 265 13 0 chr12 34929088 34929205 -86328325 - B3 SINE B2 -70 125 1 5 851 423 0 0 0 chr12 34929987 34930034 -86327496 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 851 459 0 0 0 chr12 34930034 34930084 -86327446 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 851 614 13 0 13 chr12 34931015 34931091 -86326439 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 5 851 255 103 0 0 chr12 34932833 34932872 -86324658 + (CACG)n Simple_repeat Simple_repeat 4 42 0 5 851 243 338 0 0 chr12 34933321 34933389 -86324141 + GA-rich Low_complexity Low_complexity 3 70 0 5 851 371 233 12 5 chr12 34934813 34934896 -86322634 + B3A SINE B2 12 91 -125 5 851 229 340 221 13 chr12 34936612 34936770 -86320760 + LTR81B LTR ERV1? 985 1175 -218 5 851 443 278 8 17 chr12 34936955 34937072 -86320458 - PB1D10 SINE Alu -1 116 1 5 851 372 223 13 4 chr12 34937408 34937516 -86320014 + ORR1E LTR MaLR 285 405 -14 5 851 302 273 140 10 chr12 34938124 34938224 -86319306 + PB1D7 SINE Alu 1 113 -7 5 851 797 216 66 31 chr12 34938225 34938421 -86319109 + B3 SINE B2 1 203 -13 5 851 5180 58 0 1 chr12 34939170 34939821 -86317709 - L1Md_F2 LINE L1 -9 6573 5924 5 851 440 29 5 3 chr12 34939821 34939883 -86317647 + L1Md_F2 LINE L1 5887 5949 -633 5 851 221 83 0 27 chr12 34939933 34939970 -86317560 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 5 851 5433 216 99 52 chr12 34940223 34941360 -86316170 + Lx7 LINE L1 6176 7373 -323 5 851 3183 48 2 8 chr12 34941360 34941758 -86315772 + MTA_Mm LTR MaLR 1 396 0 5 851 5433 216 99 52 chr12 34941758 34942069 -86315461 + Lx7 LINE L1 7374 7692 -4 5 851 438 348 22 22 chr12 34942116 34942254 -86315276 + RSINE1 SINE B4 13 150 -15 5 851 3526 202 67 22 chr12 34943487 34944261 -86313269 - RMER1B Other Other -23 1043 235 5 851 494 300 72 31 chr12 34944256 34944576 -86312954 + L1_Mur3 LINE L1 1953 2285 -3595 5 851 520 261 68 50 chr12 34944592 34944753 -86312777 + RLTR30 LTR ERV1 29 192 -187 5 851 930 143 43 18 chr12 34944812 34944976 -86312554 + RLTR30 LTR ERV1 183 350 -29 5 851 1368 46 0 0 chr12 34944978 34945219 -86312311 + (TG)n Simple_repeat Simple_repeat 1 241 0 5 851 494 253 72 9 chr12 34945241 34945458 -86312072 + L1_Mur3 LINE L1 2286 2521 -3365 5 851 25 31 0 0 chr12 34945485 34945517 -86312013 + AT_rich Low_complexity Low_complexity 1 32 0 5 851 32711 83 8 5 chr12 34945524 34951668 -86305862 - L1Md_F2 LINE L1 -10 6572 414 5 851 1207 244 187 24 chr12 34951670 34952254 -86305276 + L1_Mur3 LINE L1 2517 3195 -2685 5 851 288 223 156 55 chr12 34952301 34952429 -86305101 + MTEb LTR MaLR 1 141 -238 5 851 586 277 22 40 chr12 34952342 34952564 -86304966 - MTD LTR MaLR -197 224 7 5 851 265 282 13 0 chr12 34953499 34953577 -86303953 - ID4 SINE ID -3 80 2 5 851 181 303 42 92 chr12 34954412 34954532 -86302998 + MIRb SINE MIR 144 257 -11 5 851 441 0 0 0 chr12 34954532 34954581 -86302949 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 851 796 279 84 39 chr12 34956056 34956365 -86301165 + MLT1B LTR MaLR 66 388 -2 5 851 201 264 57 0 chr12 34956475 34956528 -86301002 + L2c LINE L2 3313 3368 -19 5 851 207 0 0 0 chr12 34956624 34956647 -86300883 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 851 230 291 70 43 chr12 34957136 34957251 -86300279 + MER5A1 DNA MER1_type 1 118 -48 5 851 504 0 0 0 chr12 34958742 34958798 -86298732 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 851 688 303 35 25 chr12 34959702 34959905 -86297625 + B3 SINE B2 1 205 -11 5 851 315 0 0 0 chr12 34960651 34960686 -86296844 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 851 652 236 156 6 chr12 34961322 34961501 -86296029 - B3 SINE B2 -7 209 4 5 851 303 233 0 0 chr12 34962968 34963071 -86294459 + (TA)n Simple_repeat Simple_repeat 1 103 0 5 851 486 88 0 0 chr12 34963260 34963328 -86294202 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 6 851 21 57 0 0 chr12 34964985 34965020 -86292510 + AT_rich Low_complexity Low_complexity 1 35 0 6 851 397 303 69 0 chr12 34965022 34965167 -86292363 + RSINE1 SINE B4 4 158 -7 6 851 432 0 0 0 chr12 34965278 34965326 -86292204 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 851 185 222 22 22 chr12 34965701 34965747 -86291783 - L2 LINE L2 -2053 1366 1321 6 851 703 241 53 11 chr12 34966340 34966529 -86291001 + B3 SINE B2 2 198 -18 6 851 288 77 0 0 chr12 34967022 34967061 -86290469 + (CAA)n Simple_repeat Simple_repeat 2 40 0 6 851 275 346 47 28 chr12 34967277 34967384 -86290146 + MER45A DNA Tip100 29 137 -41 6 851 320 237 189 21 chr12 34968123 34968224 -86289306 - B1F1 SINE Alu 0 148 33 6 851 728 261 75 10 chr12 34968440 34968641 -86288889 - B3 SINE B2 -1 215 2 6 851 219 324 200 0 chr12 34969358 34969463 -86288067 + RSINE1 SINE B4 38 163 -2 6 851 27 29 0 0 chr12 34971177 34971211 -86286319 + AT_rich Low_complexity Low_complexity 1 34 0 6 851 238 210 65 0 chr12 34972983 34973045 -86284485 + MER5C DNA MER1_type 89 154 -159 6 851 304 169 286 12 chr12 34974495 34974579 -86282951 - PB1D10 SINE Alu 0 127 21 6 851 29 0 0 0 chr12 34975073 34975102 -86282428 + AT_rich Low_complexity Low_complexity 1 29 0 6 851 338 173 0 13 chr12 34976091 34976167 -86281363 + CT-rich Low_complexity Low_complexity 3 77 0 6 851 324 0 0 0 chr12 34977978 34978014 -86279516 + (T)n Simple_repeat Simple_repeat 1 36 0 6 851 1183 54 0 0 chr12 34978014 34978161 -86279369 - B1_Mus1 SINE Alu 0 148 2 6 851 302 304 125 0 chr12 34978840 34978952 -86278578 + RSINE1 SINE B4 5 130 -35 6 851 480 18 0 0 chr12 34979073 34979130 -86278400 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 851 22 35 0 0 chr12 34979699 34979728 -86277802 + AT_rich Low_complexity Low_complexity 1 29 0 6 851 24 0 0 0 chr12 34979935 34979959 -86277571 + AT_rich Low_complexity Low_complexity 1 24 0 6 851 306 50 0 0 chr12 34980453 34980493 -86277037 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 851 310 284 66 22 chr12 34981633 34981770 -86275760 - MIR3 SINE MIR -11 197 55 6 851 3654 58 13 0 chr12 34982515 34982978 -86274552 + L1_Mus2 LINE L1 6098 6566 0 6 851 216 0 0 0 chr12 34983567 34983591 -86273939 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 851 31 82 0 0 chr12 34983655 34983728 -86273802 + AT_rich Low_complexity Low_complexity 1 73 0 6 851 25 31 0 0 chr12 34983853 34983885 -86273645 + AT_rich Low_complexity Low_complexity 1 32 0 6 851 849 285 20 79 chr12 34984328 34984721 -86272809 - ORR1D2 LTR MaLR 0 370 1 6 851 3261 112 4 58 chr12 34985123 34985661 -86271869 - Lx LINE L1 -5 6649 6141 6 851 306 0 0 0 chr12 34985792 34985826 -86271704 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 851 260 270 16 16 chr12 34986326 34986390 -86271140 - ID_B1 SINE B4 -32 192 129 6 851 30 0 0 0 chr12 34987362 34987392 -86270138 + AT_rich Low_complexity Low_complexity 1 30 0 6 851 1260 34 0 0 chr12 34987392 34987539 -86269991 - B1_Mus2 SINE Alu 0 147 1 6 851 195 222 235 0 chr12 34988484 34988565 -86268965 + L2c LINE L2 2492 2591 -828 6 851 309 309 40 104 chr12 34990422 34990667 -86266863 + L2c LINE L2 2922 3150 -237 6 851 464 241 147 6 chr12 34991570 34991733 -86265797 - LTR90B LTR LTR -7 789 604 6 851 710 208 4 4 chr12 34992008 34992276 -86265254 + (CA)n Simple_repeat Simple_repeat 1 268 0 6 851 380 111 14 0 chr12 34992287 34992359 -86265171 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 851 310 255 156 12 chr12 34993088 34993255 -86264275 + MER2 DNA MER2_type 96 286 -59 6 851 732 212 62 48 chr12 34993506 34993714 -86263816 - B3 SINE B2 -3 213 3 6 851 468 208 0 0 chr12 34994229 34994330 -86263200 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 851 830 256 14 9 chr12 34994902 34995115 -86262415 - B3 SINE B2 -2 214 1 6 851 188 0 0 69 chr12 34995125 34995154 -86262376 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 6 851 396 0 0 0 chr12 34996079 34996123 -86261407 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 852 3515 110 23 5 chr12 34998407 34999193 -86258337 - L1_Mus3 LINE L1 -571 6065 5270 6 852 4204 88 3 2 chr12 34999194 34999761 -86257769 + L1_Mus3 LINE L1 6069 6636 -2 6 852 381 230 0 0 chr12 35000294 35000394 -86257136 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 852 186 268 63 126 chr12 35000416 35000527 -86257003 - L3 LINE CR1 -689 3800 3697 2 852 180 0 0 0 chr12 35001077 35001097 -86256433 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 852 21 0 0 0 chr12 35001681 35001702 -86255828 + AT_rich Low_complexity Low_complexity 1 21 0 4 852 21 0 0 0 chr12 35002367 35002388 -86255142 + AT_rich Low_complexity Low_complexity 1 21 0 5 852 377 293 98 24 chr12 35002705 35002992 -86254538 + L1MEe LINE L1 570 877 -3977 6 852 295 287 54 0 chr12 35003484 35003613 -86253917 + L1MB4 LINE L1 5789 5924 -256 7 852 9313 27 2 1 chr12 35003949 35005121 -86252409 - L1Md_F2 LINE L1 -638 5944 4772 8 852 433 0 0 0 chr12 35005120 35005168 -86252362 - L1Md_F2 LINE L1 -580 6002 5955 9 852 1740 53 0 9 chr12 35005223 35005451 -86252079 + L1Md_F2 LINE L1 6357 6582 0 1 852 261 0 0 0 chr12 35005759 35005788 -86251742 + (CAA)n Simple_repeat Simple_repeat 1 29 0 1 852 342 0 0 0 chr12 35005788 35005826 -86251704 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 852 25 0 0 0 chr12 35005902 35005927 -86251603 + AT_rich Low_complexity Low_complexity 1 25 0 1 852 350 58 42 28 chr12 35005961 35006032 -86251498 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 1 852 733 259 49 0 chr12 35006067 35006272 -86251258 - B3 SINE B2 0 216 2 1 852 1309 162 75 4 chr12 35006665 35006906 -86250624 + RMER6D LTR ERVK 88 345 -375 1 852 5158 49 2 3 chr12 35006912 35007551 -86249979 - L1Md_F2 LINE L1 -12 6570 5933 1 852 320 287 82 58 chr12 35007552 35007659 -86249871 + L1M2 LINE L1 2740 2839 -3304 1 852 1144 38 50 6 chr12 35007659 35007818 -86249712 + L1Md_F3 LINE L1 6417 6582 -2 1 852 320 287 82 58 chr12 35007818 35008124 -86249406 + L1M2 LINE L1 2840 3163 -2980 1 852 295 324 33 0 chr12 35008139 35008321 -86249209 + L1M2 LINE L1 3260 3447 -2696 1 852 1015 302 188 27 chr12 35008371 35009318 -86248212 + L1M2 LINE L1 4276 5374 -769 1 852 3778 239 53 42 chr12 35009332 35009451 -86248079 - RMER1C Other Other 0 1342 1206 2 852 918 0 0 0 chr12 35009451 35009553 -86247977 + (GAA)n Simple_repeat Simple_repeat 2 103 0 2 852 3778 245 54 39 chr12 35009553 35010449 -86247081 - RMER1C Other Other -137 1205 375 2 852 317 213 13 0 chr12 35010553 35010628 -86246902 + L1M4 LINE L1 5712 5787 -391 2 852 313 323 21 0 chr12 35010655 35010748 -86246782 + B4A SINE B4 136 230 -62 2 852 288 91 0 0 chr12 35010761 35010805 -86246725 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 852 287 124 0 0 chr12 35011309 35011357 -86246173 - MTD LTR MaLR 0 421 372 2 852 524 229 24 8 chr12 35011348 35011471 -86246059 - MTD LTR MaLR -294 125 1 2 852 351 0 0 0 chr12 35011791 35011830 -86245700 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 852 274 308 53 61 chr12 35012825 35012939 -86244591 + Charlie4z DNA MER1_type 7 119 -48 2 852 225 328 15 0 chr12 35014673 35014740 -86242790 - RSINE1 SINE B4 -95 70 3 2 852 181 328 16 0 chr12 35015808 35015869 -86241661 + MIRb SINE MIR 204 265 -3 3 852 264 224 13 38 chr12 35016327 35016406 -86241124 + (TATG)n Simple_repeat Simple_repeat 3 79 0 3 852 669 304 112 0 chr12 35017005 35017265 -86240265 - MER2 DNA MER2_type -53 292 4 3 852 380 377 84 41 chr12 35017681 35018243 -86239287 + L2 LINE L2 1212 1797 -1622 3 852 714 207 0 0 chr12 35018255 35018429 -86239101 + (CA)n Simple_repeat Simple_repeat 1 174 0 3 852 36 53 0 0 chr12 35018756 35018813 -86238717 + AT_rich Low_complexity Low_complexity 1 57 0 3 852 695 156 201 30 chr12 35019003 35019202 -86238328 + Lx7 LINE L1 7464 7696 0 3 852 605 284 63 14 chr12 35019645 35019852 -86237678 - MER20 DNA MER1_type 0 219 3 3 852 255 162 142 6 chr12 35020025 35020111 -86237419 - B1F2 SINE Alu 0 120 13 3 852 1286 152 37 0 chr12 35020421 35020638 -86236892 - URR1B DNA MER1_type 0 225 1 3 852 428 198 66 0 chr12 35021286 35021392 -86236138 + MER33 DNA MER1_type 206 318 -6 4 852 2777 97 23 14 chr12 35024429 35024859 -86232671 - L1_Mus3 LINE L1 -2 6636 6203 4 852 647 271 55 0 chr12 35025029 35025228 -86232302 + Lx7 LINE L1 7153 7362 -334 4 852 315 71 0 0 chr12 35025278 35025320 -86232210 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 852 21 0 0 0 chr12 35026612 35026633 -86230897 + AT_rich Low_complexity Low_complexity 1 21 0 4 852 257 27 54 0 chr12 35029048 35029085 -86228445 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 852 1099 52 0 0 chr12 35029085 35029219 -86228311 - B1_Mm SINE Alu -9 138 5 4 852 548 245 34 20 chr12 35030227 35030373 -86227157 - B1F SINE Alu -1 148 1 4 852 617 0 0 14 chr12 35031173 35031247 -86226283 + (GAA)n Simple_repeat Simple_repeat 3 75 0 4 852 516 93 0 0 chr12 35032639 35032714 -86224816 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 852 362 273 102 75 chr12 35033202 35033388 -86224142 + B3 SINE B2 1 191 -25 5 852 1175 153 77 0 chr12 35033858 35034067 -86223463 + URR1B DNA MER1_type 1 225 0 5 852 289 213 188 21 chr12 35034850 35034946 -86222584 - PB1D7 SINE Alu -8 112 1 5 852 330 26 0 0 chr12 35035527 35035566 -86221964 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 852 360 111 0 0 chr12 35037294 35037357 -86220173 + (T)n Simple_repeat Simple_repeat 1 63 0 5 852 234 0 0 0 chr12 35037708 35037734 -86219796 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 852 561 30 0 0 chr12 35037734 35037801 -86219729 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 852 832 142 7 29 chr12 35040020 35040294 -86217236 + (CAGAGA)n Simple_repeat Simple_repeat 1 267 0 5 852 459 0 0 0 chr12 35041042 35041093 -86216437 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 852 483 18 0 0 chr12 35041774 35041830 -86215700 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 852 26 30 0 0 chr12 35042389 35042422 -86215108 + AT_rich Low_complexity Low_complexity 1 33 0 6 852 7019 128 20 2 chr12 35042888 35044016 -86213514 + Lx LINE L1 5505 6652 -2 6 852 653 225 43 14 chr12 35044058 35044312 -86213218 - HAL1-2a_MD LINE L1 -520 2504 2326 6 852 1130 272 138 27 chr12 35046083 35047105 -86210425 - L1MA8 LINE L1 -386 5905 4766 6 852 358 352 88 35 chr12 35047911 35048344 -86209186 + L1MEf LINE L1 888 1343 -4899 6 852 337 345 102 17 chr12 35048372 35048608 -86208922 + L1MEf LINE L1 4729 4984 -1162 6 852 247 277 53 0 chr12 35048859 35048953 -86208577 + L1MEf LINE L1 5358 5456 -988 6 852 324 0 0 0 chr12 35049253 35049289 -86208241 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 852 242 199 16 31 chr12 35049320 35049390 -86208140 + L1MEf LINE L1 5770 5838 -341 6 852 463 274 73 0 chr12 35050293 35050417 -86207113 + ID_B1 SINE B4 91 223 -1 6 852 242 267 93 0 chr12 35051514 35051600 -86205930 + PB1D10 SINE Alu 23 116 -1 6 852 246 330 42 8 chr12 35051681 35051800 -86205730 + L1M4 LINE L1 5038 5160 -986 6 852 231 259 83 36 chr12 35051933 35052101 -86205429 + L1M4 LINE L1 5313 5488 -686 6 852 695 290 83 25 chr12 35052111 35052387 -86205143 + B4 SINE B4 1 292 0 6 852 304 114 0 0 chr12 35052389 35052433 -86205097 + HAL1-3A_ME LINE L1 1975 2018 -840 7 852 900 186 0 0 chr12 35052441 35052737 -86204793 + (CA)n Simple_repeat Simple_repeat 1 296 0 7 852 855 212 0 0 chr12 35052761 35053018 -86204512 + (CA)n Simple_repeat Simple_repeat 1 257 0 7 852 387 88 0 17 chr12 35053018 35053076 -86204454 + HAL1-3A_ME LINE L1 1976 2032 -826 7 852 291 233 182 62 chr12 35053198 35053390 -86204140 + L1M4 LINE L1 5602 5816 -362 6 852 225 292 46 0 chr12 35055750 35055815 -86201715 - RSINE1 SINE B4 -2 163 96 7 852 264 77 0 0 chr12 35055815 35055854 -86201676 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 852 487 269 38 23 chr12 35055854 35055987 -86201543 - RSINE1 SINE B4 -25 140 6 7 852 198 71 0 0 chr12 35058188 35058216 -86199314 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 852 36 40 0 0 chr12 35059513 35059563 -86197967 + AT_rich Low_complexity Low_complexity 1 50 0 7 852 290 26 0 25 chr12 35061797 35061837 -86195693 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 852 231 302 207 7 chr12 35062059 35062209 -86195321 + L2 LINE L2 1830 2009 -1410 7 852 412 217 78 171 chr12 35062258 35062475 -86195055 - B3 SINE B2 -14 202 6 7 852 183 210 112 48 chr12 35063305 35063430 -86194100 + L2 LINE L2 2444 2576 -843 7 852 22 0 0 0 chr12 35064058 35064080 -86193450 + AT_rich Low_complexity Low_complexity 1 22 0 8 852 273 209 0 0 chr12 35069615 35069682 -86187848 + A-rich Low_complexity Low_complexity 1 67 0 8 852 255 31 0 0 chr12 35071052 35071084 -86186446 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 852 499 320 53 7 chr12 35071191 35071342 -86186188 - RSINE1 SINE B4 -4 161 4 8 852 1278 168 5 5 chr12 35072827 35073048 -86184482 - URR1B DNA MER1_type 0 225 5 8 852 203 235 0 0 chr12 35074124 35074175 -86183355 + (CTG)n Simple_repeat Simple_repeat 1 51 0 8 852 360 246 0 0 chr12 35074359 35074534 -86182996 + (TG)n Simple_repeat Simple_repeat 1 175 0 8 852 291 223 0 0 chr12 35074549 35074661 -86182869 + (TG)n Simple_repeat Simple_repeat 2 113 0 8 852 243 0 0 0 chr12 35075339 35075366 -86182164 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 852 1002 53 53 0 chr12 35075366 35075498 -86182032 - B1_Mus1 SINE Alu -9 139 1 8 852 271 311 113 9 chr12 35075656 35075877 -86181653 + L1MA8 LINE L1 6047 6290 -1 8 852 213 298 109 64 chr12 35077764 35077925 -86179605 + MIRb SINE MIR 49 222 -46 9 852 23 0 0 0 chr12 35078726 35078749 -86178781 + AT_rich Low_complexity Low_complexity 1 23 0 9 852 241 382 50 40 chr12 35080843 35081042 -86176488 - L4 LINE RTE -821 1208 1008 9 852 180 0 0 0 chr12 35082600 35082620 -86174910 + (TC)n Simple_repeat Simple_repeat 1 20 0 9 852 203 273 0 22 chr12 35082650 35082740 -86174790 + A-rich Low_complexity Low_complexity 3 90 0 9 852 357 250 8 49 chr12 35082743 35082865 -86174665 - Lx7 LINE L1 -363 7333 7217 9 852 793 253 0 40 chr12 35082875 35083048 -86174482 - B3A SINE B2 -3 195 30 9 852 220 295 12 49 chr12 35084344 35084426 -86173104 - B1F SINE Alu -3 146 68 9 852 25 0 0 0 chr12 35085338 35085363 -86172167 + AT_rich Low_complexity Low_complexity 1 25 0 9 852 233 70 0 44 chr12 35086326 35086371 -86171159 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 852 505 224 6 6 chr12 35089713 35089875 -86167655 + (TA)n Simple_repeat Simple_repeat 1 162 0 1 852 260 303 71 0 chr12 35089876 35089975 -86167555 - PB1D10 SINE Alu -11 106 1 1 852 637 92 0 138 chr12 35091205 35091357 -86166173 + Lx3A LINE L1 6851 6981 0 1 852 180 0 0 0 chr12 35092830 35092850 -86164680 + (A)n Simple_repeat Simple_repeat 1 20 0 1 852 206 378 103 5 chr12 35093631 35093854 -86163676 - MIR SINE MIR -1 261 17 1 852 455 268 118 6 chr12 35094790 35094959 -86162571 + MER20 DNA MER1_type 29 216 -3 1 852 475 213 31 16 chr12 35095203 35095332 -86162198 - L1MA6 LINE L1 -33 6267 6137 1 852 1863 203 23 0 chr12 35095331 35095685 -86161845 + Lx5 LINE L1 6355 6716 -334 1 852 452 211 155 0 chr12 35095683 35095825 -86161705 + Lx5 LINE L1 6887 7050 0 1 852 21 0 0 0 chr12 35096349 35096370 -86161160 + AT_rich Low_complexity Low_complexity 1 21 0 1 852 278 254 17 76 chr12 35096376 35096495 -86161035 + PB1D10 SINE Alu 4 115 -2 1 852 22 35 0 0 chr12 35096684 35096713 -86160817 + AT_rich Low_complexity Low_complexity 1 29 0 1 852 515 273 35 24 chr12 35097583 35097752 -86159778 + MLT1D LTR MaLR 311 481 -24 1 852 231 61 0 0 chr12 35098107 35098140 -86159390 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 852 689 34 0 11 chr12 35098388 35098477 -86159053 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 1 852 810 264 76 140 chr12 35098921 35098993 -86158537 + Lx8 LINE L1 6969 7037 -436 1 852 3082 184 64 9 chr12 35098993 35099332 -86158198 + RMER6C LTR ERVK 1 359 -331 1 852 387 0 0 0 chr12 35099332 35099375 -86158155 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 852 3082 184 64 9 chr12 35099375 35099689 -86157841 + RMER6C LTR ERVK 360 689 -1 1 852 810 264 76 140 chr12 35099689 35100153 -86157377 + Lx8 LINE L1 7038 7471 -2 1 852 213 39 0 0 chr12 35100277 35100303 -86157227 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 852 948 128 18 0 chr12 35101587 35101751 -86155779 - L1_Mus3 LINE L1 -1 6637 6471 1 852 476 330 55 40 chr12 35103603 35103805 -86153725 - MER3 DNA MER1_type -1 208 4 1 852 623 187 21 56 chr12 35104081 35104223 -86153307 - B1_Mus2 SINE Alu -2 145 9 1 852 374 333 67 32 chr12 35106209 35106703 -86150827 + L1MCb LINE L1 666 1176 -4869 1 852 597 252 12 42 chr12 35106711 35106877 -86150653 + RSINE1 SINE B4 3 163 -2 1 852 499 336 27 23 chr12 35107109 35107365 -86150165 + Lx7 LINE L1 7039 7295 -401 1 852 992 103 55 0 chr12 35107864 35108009 -86149521 + B2_Mm2 SINE B2 1 153 -42 1 852 634 42 42 0 chr12 35108009 35108105 -86149425 + (CATA)n Simple_repeat Simple_repeat 4 103 0 1 852 403 321 73 20 chr12 35108198 35108443 -86149087 + L1MC2 LINE L1 4898 5155 -991 1 852 336 312 14 0 chr12 35108592 35108736 -86148794 + L1MC2 LINE L1 5723 5868 -476 1 852 457 262 63 141 chr12 35108757 35108899 -86148631 + MT2A LTR ERVL 5 135 -466 1 852 598 220 113 17 chr12 35108897 35109118 -86148412 + MT2A LTR ERVL 340 599 -2 1 852 616 293 85 5 chr12 35109216 35109415 -86148115 - B3 SINE B2 0 216 2 1 852 527 361 81 30 chr12 35109608 35109879 -86147651 + B4A SINE B4 8 292 0 1 852 865 234 73 0 chr12 35111097 35111289 -86146241 + B3 SINE B2 9 214 -2 1 852 208 171 26 13 chr12 35113567 35113644 -86143886 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 1 852 21 0 0 0 chr12 35113909 35113930 -86143600 + AT_rich Low_complexity Low_complexity 1 21 0 1 852 359 328 70 21 chr12 35116439 35116487 -86141043 - MIR SINE MIR -19 243 193 1 852 248 0 31 0 chr12 35116487 35116519 -86141011 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 852 371 328 69 21 chr12 35116519 35116660 -86140870 - MIRb SINE MIR -70 192 49 1 852 644 36 12 0 chr12 35118903 35118986 -86138544 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 1 852 222 284 0 43 chr12 35121184 35121254 -86136276 - B1F2 SINE Alu -78 71 5 1 852 22 0 0 0 chr12 35121285 35121307 -86136223 + AT_rich Low_complexity Low_complexity 1 22 0 1 852 270 116 0 0 chr12 35123029 35123072 -86134458 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 852 263 298 26 9 chr12 35123145 35123234 -86134296 - MamRep1894 DNA hAT -191 104 14 1 852 21 36 0 0 chr12 35123798 35123826 -86133704 + AT_rich Low_complexity Low_complexity 1 28 0 1 852 481 252 39 31 chr12 35124309 35124436 -86133094 + B4 SINE B4 79 206 -86 1 852 455 0 18 0 chr12 35124750 35124805 -86132725 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 852 225 0 0 0 chr12 35126431 35126456 -86131074 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1 852 842 232 55 10 chr12 35126665 35126865 -86130665 + B3 SINE B2 2 210 -6 1 852 189 213 0 0 chr12 35127160 35127207 -86130323 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1 852 349 191 45 45 chr12 35127207 35127295 -86130235 + HAL1-3A_ME LINE L1 1975 2062 -796 1 853 7141 126 4 11 chr12 35128288 35129704 -86127826 - L1_Mus4 LINE L1 -567 6069 4670 1 853 3884 100 4 2 chr12 35129704 35130244 -86127286 + L1_Mus4 LINE L1 6095 6635 -1 1 853 252 170 0 0 chr12 35132248 35132301 -86125229 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 1 853 204 97 0 0 chr12 35132554 35132585 -86124945 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 1 853 2208 181 87 6 chr12 35133827 35134300 -86123230 - RMER5 LTR ERV1 0 534 24 1 853 676 331 48 41 chr12 35134987 35135258 -86122272 + B4 SINE B4 2 274 -18 1 853 180 111 0 0 chr12 35135258 35135285 -86122245 + (CG)n Simple_repeat Simple_repeat 1 27 0 1 853 414 0 0 0 chr12 35135285 35135330 -86122200 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 853 663 237 123 5 chr12 35138019 35138206 -86119324 - B3 SINE B2 -7 209 1 1 853 298 333 146 12 chr12 35138206 35138370 -86119160 - B4 SINE B4 -65 227 42 1 853 813 21 0 0 chr12 35138383 35138478 -86119052 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 853 375 161 68 11 chr12 35138479 35138567 -86118963 + MER58B DNA MER1_type 125 217 -124 1 853 23 0 0 0 chr12 35139015 35139038 -86118492 + AT_rich Low_complexity Low_complexity 1 23 0 1 853 330 279 19 42 chr12 35139283 35139465 -86118065 - RMER17C LTR ERVK -135 275 99 1 853 1108 107 6 11 chr12 35139465 35139645 -86117885 + (GGGAGA)n Simple_repeat Simple_repeat 1 179 0 1 853 330 279 19 42 chr12 35139645 35139675 -86117855 - RMER17C LTR ERVK -312 98 69 1 853 5921 167 30 12 chr12 35139870 35140407 -86117123 + Lx5 LINE L1 5486 6027 -1023 1 853 3594 171 28 19 chr12 35140407 35141093 -86116437 + RLTR17 LTR ERVK 1 692 0 1 853 5921 194 81 38 chr12 35141093 35142053 -86115477 + Lx5 LINE L1 6028 7050 0 1 853 1395 195 183 6 chr12 35142182 35142538 -86114992 - MTD LTR MaLR 0 419 1 1 853 225 0 0 0 chr12 35143073 35143098 -86114432 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 853 3915 168 58 13 chr12 35143154 35143916 -86113614 - L1_Mur2 LINE L1 -616 5261 4466 1 853 4210 217 82 12 chr12 35143919 35144846 -86112684 + Lx5 LINE L1 5879 6870 -180 1 853 1889 61 0 4 chr12 35145129 35145376 -86112154 + L1_Mus1 LINE L1 6321 6566 -1 1 853 23 0 0 0 chr12 35147127 35147150 -86110380 + AT_rich Low_complexity Low_complexity 1 23 0 1 853 182 355 64 8 chr12 35147253 35147378 -86110152 - L2c LINE L2 -310 3077 2946 1 853 21 0 0 0 chr12 35147400 35147421 -86110109 + AT_rich Low_complexity Low_complexity 1 21 0 1 853 400 325 101 21 chr12 35147677 35148102 -86109428 + L1MB8 LINE L1 4425 4883 -1263 1 853 395 260 74 24 chr12 35148350 35148589 -86108941 + L1MB8 LINE L1 5258 5506 -938 1 853 403 291 148 23 chr12 35148598 35148982 -86108548 + L1MB8 LINE L1 5622 6053 -125 1 853 447 19 0 0 chr12 35149056 35149108 -86108422 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 853 243 346 164 52 chr12 35149117 35149251 -86108279 - B3A SINE B2 -41 157 9 1 853 216 0 0 0 chr12 35153094 35153118 -86104412 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 853 349 367 19 0 chr12 35153749 35153907 -86103623 - RSINE1 SINE B4 -2 163 3 1 853 350 255 0 58 chr12 35154127 35154231 -86103299 - MLT1A1 LTR MaLR -3 405 308 1 853 705 24 0 0 chr12 35154727 35154810 -86102720 + (TCTCC)n Simple_repeat Simple_repeat 3 85 0 1 853 357 313 0 57 chr12 35154819 35154941 -86102589 - ID_B1 SINE B4 -1 223 109 1 853 558 108 0 0 chr12 35154963 35155046 -86102484 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 853 371 231 99 0 chr12 35155046 35155137 -86102393 + B3 SINE B2 31 130 -86 1 853 623 325 9 0 chr12 35155781 35155993 -86101537 - L1M5 LINE L1 -385 5739 5526 1 853 616 340 42 27 chr12 35156164 35156511 -86101019 + ORR1E LTR MaLR 1 371 -8 1 853 804 104 0 0 chr12 35157656 35157790 -86099740 + (CA)n Simple_repeat Simple_repeat 1 134 0 1 853 2833 47 3 0 chr12 35160028 35160371 -86097159 + ORR1A1 LTR MaLR 1 344 -2 1 853 2203 175 82 122 chr12 35160561 35161167 -86096363 + RMER4B LTR ERVK 4 585 0 1 853 398 329 37 12 chr12 35162453 35162616 -86094914 - MER119 DNA MER1_type -318 265 99 1 853 493 298 29 29 chr12 35162679 35162852 -86094678 - MER20 DNA MER1_type 0 219 47 1 853 189 342 79 0 chr12 35163372 35163448 -86094082 + L2 LINE L2 2681 2762 -657 1 853 5733 56 0 3 chr12 35164021 35164741 -86092789 + L1Md_F2 LINE L1 5865 6582 0 1 853 333 102 0 0 chr12 35164845 35164904 -86092626 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 853 32 0 0 0 chr12 35165102 35165134 -86092396 + AT_rich Low_complexity Low_complexity 1 32 0 1 853 334 333 81 30 chr12 35165786 35166120 -86091410 - L1ME4a LINE L1 -261 5863 5513 1 853 31 26 0 0 chr12 35166129 35166167 -86091363 + AT_rich Low_complexity Low_complexity 1 38 0 1 853 283 325 132 18 chr12 35166359 35166525 -86091005 - MIR SINE MIR -47 215 31 1 853 459 380 9 18 chr12 35166607 35166827 -86090703 + MER20 DNA MER1_type 2 219 0 1 853 473 246 14 29 chr12 35167275 35167413 -86090117 + B3 SINE B2 81 216 0 1 853 1213 75 0 23 chr12 35167928 35168105 -86089425 - L1Md_T LINE L1 -1 6581 6409 1 853 1428 54 21 5 chr12 35168920 35169106 -86088424 - B2_Mm1a SINE B2 -4 189 1 1 853 327 360 148 10 chr12 35169186 35169674 -86087856 - L1MD3 LINE L1 -71 7924 7370 1 853 192 279 149 83 chr12 35169814 35169935 -86087595 - MIRb SINE MIR -137 131 3 2 853 617 126 9 0 chr12 35173522 35173633 -86083897 + (TA)n Simple_repeat Simple_repeat 2 113 0 2 853 297 0 0 0 chr12 35173799 35173832 -86083698 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 853 288 170 0 0 chr12 35174582 35174635 -86082895 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 853 6913 54 5 2 chr12 35175264 35176130 -86081400 + L1_Mus1 LINE L1 5700 6567 0 2 853 22 35 0 0 chr12 35176232 35176261 -86081269 + AT_rich Low_complexity Low_complexity 1 29 0 2 853 294 143 0 0 chr12 35176986 35177035 -86080495 + (CAT)n Simple_repeat Simple_repeat 1 49 0 2 853 1030 302 60 0 chr12 35179038 35179365 -86078165 - MTE2b LTR MaLR 0 370 34 2 853 192 320 18 64 chr12 35181325 35181435 -86076095 + L2c LINE L2 3282 3386 -1 2 853 207 207 86 0 chr12 35182058 35182116 -86075414 + MIRb SINE MIR 104 166 -102 2 853 366 127 0 0 chr12 35185484 35185555 -86071975 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 853 192 40 0 0 chr12 35185557 35185582 -86071948 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 853 1528 303 57 37 chr12 35185582 35186200 -86071330 - Lx8 LINE L1 -35 7438 6809 2 853 2034 275 38 49 chr12 35186452 35187145 -86070385 + Lx8 LINE L1 6380 7064 -409 2 853 301 233 17 0 chr12 35187235 35187295 -86070235 + ID4_ SINE ID 21 81 -2 2 853 411 214 0 37 chr12 35187597 35187704 -86069826 - RMER1C Other Other -30 1312 1210 2 853 2941 213 17 15 chr12 35187726 35188322 -86069208 - RMER1C Other Other -121 1221 625 2 853 881 235 10 15 chr12 35188506 35188705 -86068825 + B3 SINE B2 1 198 -18 2 853 252 86 0 0 chr12 35189005 35189040 -86068490 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 853 186 43 0 0 chr12 35190434 35190457 -86067073 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 853 23 0 0 0 chr12 35190505 35190528 -86067002 + AT_rich Low_complexity Low_complexity 1 23 0 2 853 243 152 0 0 chr12 35190638 35190684 -86066846 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 2 853 683 331 94 30 chr12 35190865 35191130 -86066400 + B4 SINE B4 9 290 -2 2 853 210 186 23 0 chr12 35191510 35191553 -86065977 + A-rich Low_complexity Low_complexity 2 45 0 2 853 1087 101 0 0 chr12 35192823 35192971 -86064559 + B1_Mus1 SINE Alu 1 148 0 2 853 201 182 0 0 chr12 35192971 35193004 -86064526 + A-rich Low_complexity Low_complexity 1 33 0 2 853 519 312 84 19 chr12 35193106 35193367 -86064163 + B4A SINE B4 1 278 -14 2 853 416 91 15 0 chr12 35193372 35193438 -86064092 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 853 782 257 10 10 chr12 35194926 35195130 -86062400 - B3 SINE B2 -10 206 3 2 853 233 315 9 0 chr12 35195198 35195309 -86062221 - L1M5 LINE L1 -2165 3981 3870 2 853 268 345 19 19 chr12 35195381 35195567 -86061963 + L1M5 LINE L1 5355 5540 -700 2 853 1274 126 10 0 chr12 35196215 35196422 -86061108 + Lx2 LINE L1 6783 6991 -6 2 853 207 0 0 0 chr12 35196422 35196445 -86061085 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 853 330 26 0 0 chr12 35197185 35197224 -86060306 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 853 653 209 35 21 chr12 35197258 35197400 -86060130 - B1_Mur2 SINE Alu 0 149 6 2 853 311 200 32 127 chr12 35197293 35197419 -86060111 - MT2B LTR ERVL -337 264 151 2 853 471 35 0 0 chr12 35197962 35198019 -86059511 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 853 1093 290 102 24 chr12 35199029 35199570 -86057960 + Lx8 LINE L1 6863 7445 -28 2 853 23 0 0 0 chr12 35199595 35199618 -86057912 + AT_rich Low_complexity Low_complexity 1 23 0 2 853 182 325 36 12 chr12 35199802 35199886 -86057644 + L2a LINE L2 3337 3422 -4 2 853 1505 46 5 0 chr12 35199900 35200095 -86057435 - L1Md_F2 LINE L1 0 6582 6387 2 853 387 0 0 0 chr12 35200215 35200258 -86057272 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 853 1146 284 40 20 chr12 35200576 35200925 -86056605 + MTD LTR MaLR 11 366 -53 2 853 26 0 0 0 chr12 35201378 35201404 -86056126 + AT_rich Low_complexity Low_complexity 1 26 0 2 853 450 0 0 0 chr12 35201642 35201692 -86055838 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 853 24 53 0 0 chr12 35202415 35202453 -86055077 + AT_rich Low_complexity Low_complexity 1 38 0 2 853 276 77 0 0 chr12 35202631 35202670 -86054860 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 2 853 432 0 0 0 chr12 35203724 35203772 -86053758 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 853 495 246 71 8 chr12 35204800 35204927 -86052603 - B1F SINE Alu 0 149 15 2 853 214 162 27 0 chr12 35205140 35205177 -86052353 + CT-rich Low_complexity Low_complexity 1 38 0 2 853 375 98 0 0 chr12 35205941 35206002 -86051528 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 853 275 314 72 111 chr12 35206005 35206213 -86051317 + B4 SINE B4 70 269 -23 2 853 540 45 0 0 chr12 35206213 35206280 -86051250 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 853 428 51 17 0 chr12 35206280 35206339 -86051191 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 853 290 287 74 11 chr12 35206881 35206976 -86050554 + B4A SINE B4 189 289 -3 2 853 312 298 136 103 chr12 35207110 35207204 -86050326 - HAL1b LINE L1 -142 1867 1760 2 853 207 0 0 0 chr12 35207204 35207227 -86050303 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 853 312 298 136 103 chr12 35207227 35207704 -86049826 - HAL1b LINE L1 -250 1759 1277 2 853 714 205 0 64 chr12 35207816 35207957 -86049573 - B1_Mur3 SINE Alu -17 132 1 2 853 253 82 41 0 chr12 35208170 35208219 -86049311 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2 853 496 122 8 31 chr12 35208227 35208354 -86049176 + (TA)n Simple_repeat Simple_repeat 1 124 0 2 853 189 0 0 0 chr12 35211074 35211095 -86046435 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 853 561 138 0 0 chr12 35212423 35212517 -86045013 + (TG)n Simple_repeat Simple_repeat 1 94 0 2 853 279 0 0 0 chr12 35214533 35214564 -86042966 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 853 21 0 0 0 chr12 35215721 35215742 -86041788 + AT_rich Low_complexity Low_complexity 1 21 0 2 853 207 0 0 0 chr12 35215912 35215935 -86041595 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 853 363 278 25 31 chr12 35216191 35216351 -86041179 - L1_Rod LINE L1 -11 5836 5678 2 853 708 295 99 36 chr12 35216352 35216826 -86040704 + L1MA4 LINE L1 5395 5898 -402 2 853 480 62 0 0 chr12 35216852 35216916 -86040614 + (TATG)n Simple_repeat Simple_repeat 4 67 0 2 853 530 204 0 21 chr12 35217131 35217253 -86040277 + Lx5 LINE L1 6771 6954 -96 2 853 530 174 17 0 chr12 35218584 35218597 -86038933 + polypyrimidine Low_complexity Low_complexity 105 117 0 2 853 1170 117 0 0 chr12 35218597 35218776 -86038754 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 853 530 174 17 0 chr12 35218776 35218877 -86038653 + CT-rich Low_complexity Low_complexity 2 104 0 2 853 304 348 99 0 chr12 35218877 35219018 -86038512 - HAL1-3A_ME LINE L1 -420 2438 2284 2 853 1151 112 6 0 chr12 35219031 35219210 -86038320 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 853 2356 38 0 3 chr12 35219477 35219765 -86037765 + L1Md_F3 LINE L1 6298 6584 0 2 853 27 49 0 0 chr12 35220639 35220680 -86036850 + AT_rich Low_complexity Low_complexity 1 41 0 2 853 441 321 0 51 chr12 35221107 35221243 -86036287 + B1F2 SINE Alu 3 129 -20 2 853 2438 92 3 0 chr12 35222359 35222685 -86034845 + ORR1A2 LTR MaLR 1 327 0 2 853 1210 248 30 107 chr12 35222737 35223130 -86034400 + MTE2a LTR MaLR 9 371 -8 2 853 596 181 24 0 chr12 35223484 35223611 -86033919 - Lx9 LINE L1 -7 7637 7508 2 853 2981 60 5 0 chr12 35224356 35224737 -86032793 + L1Md_F2 LINE L1 6189 6571 -11 2 853 1026 205 146 7 chr12 35225790 35226099 -86031431 - Lx9 LINE L1 -23 7621 7270 2 853 705 262 43 12 chr12 35226396 35226558 -86030972 + B3A SINE B2 1 167 -31 2 853 530 341 149 28 chr12 35227156 35227294 -86030236 - Lx8 LINE L1 -1 7472 7332 2 853 637 79 10 10 chr12 35227294 35227396 -86030134 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 853 530 341 149 28 chr12 35227396 35227827 -86029703 - Lx8 LINE L1 -142 7331 6834 2 853 350 96 0 19 chr12 35227834 35227887 -86029643 + Lx9 LINE L1 6936 6987 -657 2 853 249 33 0 0 chr12 35228105 35228135 -86029395 + (A)n Simple_repeat Simple_repeat 1 30 0 2 853 23 0 0 0 chr12 35228240 35228263 -86029267 + AT_rich Low_complexity Low_complexity 1 23 0 2 853 186 267 161 62 chr12 35230413 35230525 -86027005 + MIR SINE MIR 19 141 -67 2 853 634 325 94 5 chr12 35230708 35230921 -86026609 - Tigger5 DNA MER2_type -2173 233 2 2 853 25 0 0 0 chr12 35231209 35231234 -86026296 + AT_rich Low_complexity Low_complexity 1 25 0 2 853 28 48 0 0 chr12 35231888 35231930 -86025600 + AT_rich Low_complexity Low_complexity 1 42 0 2 853 338 336 34 22 chr12 35232075 35232247 -86025283 + L1M5 LINE L1 5378 5550 -629 2 853 210 276 13 13 chr12 35233201 35233278 -86024252 + (CATA)n Simple_repeat Simple_repeat 2 78 0 2 853 255 361 30 20 chr12 35234716 35234815 -86022715 + MLT1A0 LTR MaLR 249 348 -17 2 853 180 0 0 0 chr12 35234907 35234927 -86022603 + (T)n Simple_repeat Simple_repeat 1 20 0 2 853 268 260 59 10 chr12 35235631 35235732 -86021798 + Lx9 LINE L1 7532 7637 -7 2 853 283 266 41 45 chr12 35236143 35236283 -86021247 + CT-rich Low_complexity Low_complexity 1 139 0 2 853 21 36 0 0 chr12 35236603 35236631 -86020899 + AT_rich Low_complexity Low_complexity 1 28 0 2 853 284 242 40 50 chr12 35237209 35237225 -86020305 + CYRA11_Mm Unknown Y-chromosome 160 174 -443 2 853 555 154 0 19 chr12 35237225 35237331 -86020199 - URR1B DNA MER1_type 0 225 122 2 853 208 277 241 0 chr12 35237497 35237580 -86019950 - L2a LINE L2 -27 3399 3297 3 853 1507 151 54 60 chr12 35238790 35239121 -86018409 + ORR1A4 LTR MaLR 1 329 0 3 853 531 332 36 0 chr12 35239806 35240002 -86017528 + MER58A DNA MER1_type 22 224 0 3 853 351 0 0 0 chr12 35241437 35241476 -86016054 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 853 328 356 27 38 chr12 35242505 35242689 -86014841 + B3A SINE B2 1 182 -16 3 853 554 275 66 0 chr12 35243234 35243416 -86014114 + B3A SINE B2 1 194 -4 3 853 816 65 0 0 chr12 35244350 35244457 -86013073 + (GGAAA)n Simple_repeat Simple_repeat 3 109 0 3 853 520 282 19 21 chr12 35250078 35250236 -86007294 + Lx9 LINE L1 5602 5796 -84 3 853 345 176 0 14 chr12 35250244 35250313 -86007217 + Lx9 LINE L1 5905 5972 -1672 3 853 753 296 83 10 chr12 35250590 35250890 -86006640 + Lx9 LINE L1 6697 7018 -626 3 853 907 253 45 135 chr12 35250917 35251273 -86006257 + RLTR18B LTR ERVK 187 510 -2 3 853 321 149 0 0 chr12 35252029 35252096 -86005434 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 853 180 111 0 0 chr12 35253136 35253163 -86004367 + (T)n Simple_repeat Simple_repeat 1 27 0 3 853 309 51 0 0 chr12 35254728 35254767 -86002763 + (TTA)n Simple_repeat Simple_repeat 1 39 0 3 853 284 70 0 23 chr12 35255574 35255618 -86001912 + (TGG)n Simple_repeat Simple_repeat 1 43 0 3 853 193 135 19 19 chr12 35257089 35257142 -86000388 + (TAA)n Simple_repeat Simple_repeat 2 54 0 3 853 25 0 0 0 chr12 35257144 35257169 -86000361 + AT_rich Low_complexity Low_complexity 1 25 0 3 854 720 185 205 5 chr12 35258472 35258657 -85998873 + URR1A DNA MER1_type 1 222 -4 3 854 3335 27 7 5 chr12 35259914 35260318 -85997212 - L1Md_F3 LINE L1 -3 6581 6177 3 854 839 257 19 39 chr12 35262276 35262527 -85995003 - ORR1D1 LTR MaLR -1 373 102 3 854 211 189 37 19 chr12 35262531 35262585 -85994945 + (CAGAGA)n Simple_repeat Simple_repeat 2 56 0 3 854 210 71 0 0 chr12 35262586 35262614 -85994916 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 854 825 195 10 51 chr12 35262614 35262809 -85994721 - ORR1D1 LTR MaLR -187 187 1 3 854 236 265 0 14 chr12 35262830 35262899 -85994631 + (CAGGA)n Simple_repeat Simple_repeat 3 70 0 3 854 264 346 148 19 chr12 35263925 35264196 -85993334 - L2a LINE L2 -43 3383 3078 3 854 1221 186 23 0 chr12 35264357 35264572 -85992958 - URR1B DNA MER1_type 0 225 6 3 854 259 304 103 8 chr12 35264660 35264786 -85992744 - L1M3 LINE L1 -668 5521 5384 3 854 287 241 62 76 chr12 35264853 35264997 -85992533 - L1M3 LINE L1 -842 5298 5157 3 854 1187 61 0 0 chr12 35265082 35265222 -85992308 + B1_Mus1 SINE Alu 1 140 -8 3 854 291 21 62 0 chr12 35265222 35265270 -85992260 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 854 469 259 92 28 chr12 35265335 35265553 -85991977 + L1MB1 LINE L1 5741 5972 -196 3 854 216 281 0 0 chr12 35265693 35265782 -85991748 + GA-rich Low_complexity Low_complexity 1 89 0 3 854 302 346 39 8 chr12 35265782 35265910 -85991620 + HAL1-3A_ME LINE L1 2285 2416 -442 3 854 950 39 0 0 chr12 35267136 35267263 -85990267 - B1_Mus1 SINE Alu -21 127 1 3 854 398 331 37 49 chr12 35269046 35269257 -85988273 - MIRb SINE MIR -28 234 32 3 854 243 0 0 0 chr12 35270147 35270174 -85987356 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 3 854 450 238 86 0 chr12 35270368 35270473 -85987057 + B4 SINE B4 119 232 -60 3 854 204 167 0 0 chr12 35270488 35270536 -85986994 + (TAGGG)n Simple_repeat Simple_repeat 3 50 0 3 854 21 0 0 0 chr12 35270912 35270933 -85986597 + AT_rich Low_complexity Low_complexity 1 21 0 3 854 480 258 0 0 chr12 35270992 35271143 -85986387 + (TG)n Simple_repeat Simple_repeat 2 152 0 3 854 738 207 0 0 chr12 35271160 35271339 -85986191 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 854 206 128 64 0 chr12 35271788 35271835 -85985695 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 854 313 260 20 0 chr12 35272543 35272643 -85984887 + CT-rich Low_complexity Low_complexity 1 102 0 3 854 1312 207 44 150 chr12 35275846 35276346 -85981184 + Lx7 LINE L1 7250 7696 0 3 854 826 285 92 31 chr12 35276382 35276441 -85981089 - RCHARR1 DNA MER1_type -588 386 326 3 854 555 16 0 0 chr12 35276441 35276505 -85981025 + (GAAAA)n Simple_repeat Simple_repeat 2 65 0 3 854 826 285 92 31 chr12 35276505 35276803 -85980727 - RCHARR1 DNA MER1_type -649 325 7 3 854 311 267 11 55 chr12 35277901 35278083 -85979447 + (TATATG)n Simple_repeat Simple_repeat 2 175 0 3 854 201 154 0 0 chr12 35278237 35278276 -85979254 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 854 234 314 133 0 chr12 35280567 35280687 -85976843 - MIRb SINE MIR -110 152 26 3 854 256 288 0 70 chr12 35281552 35281623 -85975907 - ID4_ SINE ID -13 70 5 3 854 468 254 86 16 chr12 35281799 35281927 -85975603 - B3 SINE B2 -8 208 72 3 854 281 26 0 26 chr12 35282261 35282300 -85975230 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 854 1001 97 15 0 chr12 35282300 35282434 -85975096 - B1_Mus2 SINE Alu -10 137 2 3 854 207 100 0 0 chr12 35283992 35284022 -85973508 + (T)n Simple_repeat Simple_repeat 1 30 0 3 854 1232 54 0 0 chr12 35284022 35284169 -85973361 - B1_Mus2 SINE Alu 0 147 1 3 854 591 15 0 0 chr12 35284233 35284301 -85973229 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 854 1459 129 171 11 chr12 35284810 35285091 -85972439 - IAPLTR4 LTR ERVK -19 326 1 3 854 531 0 0 0 chr12 35285106 35285165 -85972365 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 854 1208 233 135 15 chr12 35285259 35285599 -85971931 - MTD LTR MaLR -38 381 1 3 854 1056 281 78 13 chr12 35285640 35286108 -85971422 - Lx7 LINE L1 -1782 5914 5386 3 854 387 311 35 15 chr12 35286105 35286307 -85971223 + Lx8 LINE L1 7266 7471 -2 3 854 455 337 5 52 chr12 35290534 35290725 -85966805 + B3A SINE B2 1 182 -16 3 854 24 0 0 0 chr12 35290795 35290819 -85966711 + AT_rich Low_complexity Low_complexity 1 24 0 3 854 428 278 79 8 chr12 35290852 35290979 -85966551 - B3A SINE B2 -62 136 1 3 854 361 187 26 13 chr12 35291329 35291405 -85966125 - HAL1-3A_ME LINE L1 -806 2052 1976 3 854 300 200 0 0 chr12 35291412 35291487 -85966043 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 854 186 352 62 44 chr12 35291499 35291612 -85965918 + L2b LINE L2 3241 3355 -20 3 854 542 82 12 0 chr12 35291638 35291723 -85965807 + (GA)n Simple_repeat Simple_repeat 2 87 0 3 854 7422 55 4 6 chr12 35292768 35293827 -85963703 + L1_Mus2 LINE L1 5497 6553 -13 3 854 808 86 14 0 chr12 35294066 35294206 -85963324 + (TC)n Simple_repeat Simple_repeat 1 142 0 3 854 544 285 26 26 chr12 35294206 35294218 -85963312 - RSINE1 SINE B4 -10 155 145 3 854 522 0 0 0 chr12 35294218 35294276 -85963254 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 854 544 285 26 26 chr12 35294276 35294407 -85963123 - RSINE1 SINE B4 -21 144 12 3 854 42 36 0 0 chr12 35294666 35294722 -85962808 + AT_rich Low_complexity Low_complexity 1 56 0 3 854 741 242 78 5 chr12 35294757 35294948 -85962582 - B3 SINE B2 -11 205 1 3 854 234 0 0 0 chr12 35296089 35296115 -85961415 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 3 854 247 321 103 18 chr12 35296987 35297152 -85960378 - MIR SINE MIR -61 201 23 3 854 676 283 25 40 chr12 35297447 35297646 -85959884 - B3A SINE B2 -1 197 2 3 854 407 286 106 34 chr12 35297918 35298153 -85959377 + MLT1J1 LTR MaLR 66 317 -127 3 854 270 391 117 51 chr12 35298301 35298847 -85958683 + MLT1J-int LTR MaLR 21 602 -785 3 854 42 0 0 0 chr12 35299242 35299284 -85958246 + AT_rich Low_complexity Low_complexity 1 42 0 3 854 450 94 0 0 chr12 35300554 35300618 -85956912 + (CAAG)n Simple_repeat Simple_repeat 1 64 0 3 854 522 229 29 22 chr12 35300770 35301086 -85956444 + (TG)n Simple_repeat Simple_repeat 1 317 0 3 854 440 259 22 60 chr12 35300954 35301139 -85956391 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 3 854 458 249 11 58 chr12 35301066 35301254 -85956276 + (TATG)n Simple_repeat Simple_repeat 2 180 0 3 854 359 289 23 29 chr12 35301169 35301340 -85956190 + (TATATG)n Simple_repeat Simple_repeat 1 170 0 3 854 423 304 97 55 chr12 35301375 35301612 -85955918 - B4 SINE B4 -30 262 16 3 854 24 0 0 0 chr12 35303247 35303271 -85954259 + AT_rich Low_complexity Low_complexity 1 24 0 3 854 404 317 25 0 chr12 35306373 35306493 -85951037 - B1F SINE Alu -24 125 3 3 854 750 246 28 6 chr12 35307326 35307506 -85950024 + B3 SINE B2 9 192 -24 3 854 3743 11 121 0 chr12 35307823 35308263 -85949267 - MT2_Mm LTR ERVL 0 493 1 3 854 302 0 0 0 chr12 35308263 35308301 -85949229 - MERVL-int LTR ERVL 0 5485 5448 3 854 383 164 12 37 chr12 35308301 35308383 -85949147 - ORR1A3-int LTR MaLR -1323 640 561 3 854 40777 16 1 0 chr12 35308383 35313164 -85944366 - MERVL-int LTR ERVL -120 5365 579 3 854 1370 6 12 0 chr12 35313146 35313310 -85944220 - MERVL-int LTR ERVL -5319 166 1 3 854 4460 12 0 0 chr12 35313310 35313803 -85943727 - MT2_Mm LTR ERVL 0 493 1 3 854 363 44 0 0 chr12 35314306 35314351 -85943179 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 854 669 281 49 0 chr12 35314351 35314515 -85943015 - B3A SINE B2 -25 173 2 3 854 557 141 10 0 chr12 35315253 35315352 -85942178 + GA-rich Low_complexity Low_complexity 5 104 0 3 854 1226 90 6 0 chr12 35315354 35315532 -85941998 + (GAA)n Simple_repeat Simple_repeat 1 179 0 3 854 306 374 60 13 chr12 35316281 35316430 -85941100 + HAL1-3A_ME LINE L1 2284 2439 -419 3 854 4117 52 2 13 chr12 35316484 35317015 -85940515 + L1Md_F2 LINE L1 6046 6570 -12 3 854 1694 146 167 0 chr12 35317316 35317645 -85939885 + ORR1C2 LTR MaLR 1 384 0 3 854 214 346 123 35 chr12 35317915 35318153 -85939377 - MIRb SINE MIR -6 262 10 3 854 227 320 19 25 chr12 35318196 35318356 -85939174 + (CATA)n Simple_repeat Simple_repeat 4 162 0 3 854 35 71 0 0 chr12 35318441 35318511 -85939019 + AT_rich Low_complexity Low_complexity 1 70 0 3 854 275 250 134 10 chr12 35319108 35319205 -85938325 - MIR SINE MIR -41 221 113 3 854 566 314 42 39 chr12 35319248 35319533 -85937997 + B4A SINE B4 1 286 -6 3 854 1174 252 89 3 chr12 35320111 35320438 -85937092 - MTD LTR MaLR -15 404 50 3 854 483 60 0 0 chr12 35321552 35321619 -85935911 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 854 657 0 0 0 chr12 35322592 35322665 -85934865 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 854 254 87 22 0 chr12 35323080 35323126 -85934404 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 4 854 739 90 0 8 chr12 35323168 35323291 -85934239 + L1_Mus4 LINE L1 6512 6633 -3 4 854 243 0 0 0 chr12 35324384 35324411 -85933119 + (A)n Simple_repeat Simple_repeat 1 27 0 4 854 256 283 130 30 chr12 35325277 35325408 -85932122 + L1M5 LINE L1 5516 5659 -581 4 854 234 343 55 45 chr12 35326382 35326492 -85931038 - RSINE1 SINE B4 -10 155 45 4 854 630 0 0 0 chr12 35326532 35326602 -85930928 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 854 366 217 99 6 chr12 35326621 35326783 -85930747 - Lx2B LINE L1 -3 6997 6821 4 854 341 169 27 8 chr12 35326780 35326853 -85930677 + Lx4B LINE L1 6866 6929 -129 4 854 1444 263 50 48 chr12 35327117 35327553 -85929977 + RCHARR1 DNA MER1_type 214 650 -324 4 854 790 237 60 12 chr12 35327569 35327817 -85929713 + RCHARR1 DNA MER1_type 715 974 0 4 854 268 276 172 44 chr12 35328579 35328777 -85928753 - MIRb SINE MIR -23 245 12 4 854 892 194 147 5 chr12 35329089 35329286 -85928244 + URR1B DNA MER1_type 1 225 0 4 854 383 254 42 35 chr12 35329168 35329311 -85928219 - CYRA11_Mm Unknown Y-chromosome -328 289 146 4 854 8254 29 0 0 chr12 35329825 35330788 -85926742 + L1Md_T LINE L1 5620 6582 0 4 854 416 259 9 27 chr12 35331109 35331220 -85926310 - PB1D10 SINE Alu -8 109 1 4 854 937 220 56 19 chr12 35331827 35332040 -85925490 + URR1B DNA MER1_type 5 225 0 4 854 204 279 0 0 chr12 35332381 35332424 -85925106 + polypyrimidine Low_complexity Low_complexity 3 45 0 4 854 374 352 148 12 chr12 35334646 35334902 -85922628 + B4A SINE B4 2 292 0 4 854 539 314 88 52 chr12 35337412 35337684 -85919846 + MLT1A0 LTR MaLR 30 311 -54 4 854 29 0 0 0 chr12 35337741 35337770 -85919760 + AT_rich Low_complexity Low_complexity 1 29 0 4 854 1110 26 26 0 chr12 35337900 35337940 -85919590 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 4 854 1107 23 0 0 chr12 35337940 35338070 -85919460 + (GGGAA)n Simple_repeat Simple_repeat 2 131 0 4 854 1110 26 26 0 chr12 35338070 35338180 -85919350 + (GAAA)n Simple_repeat Simple_repeat 1 111 0 4 854 367 277 119 59 chr12 35338917 35339136 -85918394 - L1ME1 LINE L1 -3 6175 5944 4 854 483 313 65 17 chr12 35339451 35339682 -85917848 + Lx8 LINE L1 6931 7172 -301 4 854 1269 259 32 3 chr12 35340009 35340354 -85917176 - Lx6 LINE L1 -15 7445 7091 4 854 217 49 47 47 chr12 35341813 35341856 -85915674 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 4 854 848 28 9 0 chr12 35341861 35341968 -85915562 + (GGA)n Simple_repeat Simple_repeat 3 110 0 4 854 326 308 171 13 chr12 35343979 35344137 -85913393 - MIR SINE MIR -51 211 29 4 854 21 36 0 0 chr12 35344206 35344234 -85913296 + AT_rich Low_complexity Low_complexity 1 28 0 4 854 812 253 56 5 chr12 35344413 35344608 -85912922 + B3 SINE B2 12 216 0 4 854 291 215 0 0 chr12 35344758 35344823 -85912707 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 854 1128 183 27 5 chr12 35346796 35347016 -85910514 + URR1A DNA MER1_type 2 226 0 4 854 5512 88 14 4 chr12 35347757 35348514 -85909016 + L1_Mus4 LINE L1 5872 6636 0 4 854 1289 100 0 6 chr12 35350904 35351085 -85906445 + B2_Mm2 SINE B2 2 181 -14 4 854 187 303 0 73 chr12 35351805 35351887 -85905643 - MIRm SINE MIR -128 148 73 4 854 641 318 71 6 chr12 35352557 35352883 -85904647 + L1MEc LINE L1 868 1214 -5186 4 854 453 291 24 124 chr12 35352963 35353132 -85904398 + B3 SINE B2 60 211 -5 4 854 25 31 0 0 chr12 35353228 35353260 -85904270 + AT_rich Low_complexity Low_complexity 1 32 0 4 854 657 96 0 0 chr12 35353308 35353402 -85904128 + (GGAA)n Simple_repeat Simple_repeat 4 97 0 4 854 285 345 80 0 chr12 35353595 35353708 -85903822 + B4 SINE B4 40 161 -131 4 854 598 284 19 29 chr12 35353734 35353913 -85903617 + B4 SINE B4 78 292 0 4 854 493 306 204 8 chr12 35354103 35354456 -85903074 + L1MEc LINE L1 2207 2628 -3691 4 854 346 240 121 101 chr12 35354489 35354795 -85902735 + L1MD LINE L1 2572 2883 -3263 4 854 275 284 99 20 chr12 35355076 35355278 -85902252 + L1MEc LINE L1 3239 3464 -2855 4 854 379 293 105 0 chr12 35355278 35355411 -85902119 + B1_Mur1 SINE Alu 1 147 -2 4 854 279 281 116 26 chr12 35355411 35355647 -85901883 + L1MEc LINE L1 3465 3719 -2600 4 854 220 366 24 73 chr12 35355666 35355684 -85901846 + B4A SINE B4 77 149 -143 4 854 508 326 0 0 chr12 35355684 35355813 -85901717 + B1F SINE Alu 10 138 -11 4 854 220 366 24 73 chr12 35355813 35355831 -85901699 + B4A SINE B4 150 233 -59 4 854 405 0 0 0 chr12 35355860 35355905 -85901625 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 854 309 273 197 27 chr12 35355936 35356083 -85901447 + L1M2 LINE L1 3593 3764 -2379 4 854 438 303 160 6 chr12 35356758 35356914 -85900616 - B4A SINE B4 -112 180 1 4 854 437 314 39 7 chr12 35356931 35357085 -85900445 - MIRc SINE MIR -28 240 82 4 854 240 59 0 0 chr12 35357371 35357405 -85900125 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 4 854 21 36 0 0 chr12 35357545 35357573 -85899957 + AT_rich Low_complexity Low_complexity 1 28 0 4 854 21 0 0 0 chr12 35357880 35357901 -85899629 + AT_rich Low_complexity Low_complexity 1 21 0 4 854 348 291 138 11 chr12 35358545 35358726 -85898804 + B3 SINE B2 1 204 -12 4 854 439 204 6 19 chr12 35358904 35359064 -85898466 + GA-rich Low_complexity Low_complexity 1 158 0 4 854 365 294 166 36 chr12 35359101 35359348 -85898182 - B4 SINE B4 -11 281 3 4 854 228 135 0 0 chr12 35359568 35359605 -85897925 + (A)n Simple_repeat Simple_repeat 1 37 0 4 854 1539 133 22 87 chr12 35360043 35360364 -85897166 + Lx2A1 LINE L1 6707 7006 -2 4 854 196 109 91 0 chr12 35360811 35360866 -85896664 + T-rich Low_complexity Low_complexity 3 62 0 4 854 738 227 157 0 chr12 35361456 35361641 -85895889 + B3 SINE B2 2 215 -1 4 854 529 258 62 8 chr12 35362188 35362317 -85895213 - B1F SINE Alu -11 138 3 4 854 1905 46 8 0 chr12 35362528 35362766 -85894764 - L1_Mus2 LINE L1 0 6566 6327 4 854 21 0 0 0 chr12 35362823 35362844 -85894686 + AT_rich Low_complexity Low_complexity 1 21 0 4 854 504 309 0 54 chr12 35362869 35363016 -85894514 - RSINE1 SINE B4 -13 152 14 4 854 259 58 37 37 chr12 35363205 35363259 -85894271 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 4 854 210 71 0 0 chr12 35363353 35363381 -85894149 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 854 685 329 91 17 chr12 35363857 35363919 -85893611 + RCHARR1 DNA MER1_type 3 65 -909 4 854 243 0 0 0 chr12 35363919 35363946 -85893584 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 854 685 329 91 17 chr12 35363946 35364180 -85893350 + RCHARR1 DNA MER1_type 66 321 -653 4 854 233 305 12 12 chr12 35364296 35364379 -85893151 + GA-rich Low_complexity Low_complexity 3 85 0 4 854 1408 286 101 40 chr12 35366885 35367008 -85890522 - Lx8 LINE L1 0 7473 7362 4 854 2437 27 0 14 chr12 35367008 35367337 -85890193 - L1Md_F3 LINE L1 0 6584 6282 4 854 1408 286 101 40 chr12 35367337 35367360 -85890170 - Lx8 LINE L1 -112 7361 7309 4 854 417 39 0 0 chr12 35367360 35367411 -85890119 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 854 1408 286 101 40 chr12 35367411 35367893 -85889637 - Lx8 LINE L1 -165 7308 6806 4 854 438 294 25 6 chr12 35370258 35370419 -85887111 - MER5A1 DNA MER1_type 0 166 3 4 854 296 342 75 56 chr12 35370869 35371191 -85886339 - L2 LINE L2 -618 2801 2474 4 854 447 19 0 0 chr12 35371663 35371715 -85885815 + (TAA)n Simple_repeat Simple_repeat 2 53 0 4 854 282 287 0 38 chr12 35372934 35373039 -85884491 + PB1D7 SINE Alu 5 105 -15 4 854 250 87 21 21 chr12 35375177 35375224 -85882306 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 4 854 387 311 57 16 chr12 35375249 35375373 -85882157 - RSINE1 SINE B4 -33 132 4 4 854 1067 75 0 0 chr12 35376614 35376748 -85880782 + B1_Mus2 SINE Alu 1 134 -13 4 854 379 0 19 19 chr12 35376748 35376800 -85880730 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 4 854 327 311 67 0 chr12 35377122 35377212 -85880318 + PB1D10 SINE Alu 13 108 -9 4 854 231 288 0 40 chr12 35377795 35377871 -85879659 - MIRb SINE MIR -39 229 157 4 854 1143 67 0 0 chr12 35377889 35378038 -85879492 - L1_Mus1 LINE L1 0 6567 6419 4 854 306 263 13 0 chr12 35378081 35378157 -85879373 + ID4 SINE ID 1 77 -6 4 854 252 188 0 0 chr12 35378157 35378226 -85879304 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 854 6043 55 4 10 chr12 35378685 35379454 -85878076 + L1Md_F2 LINE L1 5819 6582 0 4 854 475 242 20 10 chr12 35379560 35379660 -85877870 + PB1D7 SINE Alu 15 115 -5 4 854 2531 155 32 88 chr12 35379680 35380238 -85877292 + RLTR11A2 LTR ERVK 1 527 0 4 854 3598 271 72 9 chr12 35380468 35381627 -85875903 + Lx6 LINE L1 6228 7459 -1 4 854 522 0 0 0 chr12 35381982 35382040 -85875490 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 854 213 330 41 25 chr12 35385560 35385681 -85871849 + MIRc SINE MIR 45 167 -101 4 854 672 67 0 0 chr12 35386311 35386401 -85871129 + (TG)n Simple_repeat Simple_repeat 2 91 0 4 854 189 301 145 61 chr12 35387060 35387191 -85870339 - MER5A DNA MER1_type -34 155 14 4 854 488 305 12 0 chr12 35388682 35388849 -85868681 + Lx8 LINE L1 6817 6985 -488 4 855 426 85 0 0 chr12 35390062 35390121 -85867409 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 855 223 196 19 19 chr12 35390318 35390370 -85867160 + B3A SINE B2 5 56 -142 4 855 297 0 0 0 chr12 35390430 35390463 -85867067 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 855 967 248 73 12 chr12 35390546 35390791 -85866739 - MTD LTR MaLR -159 260 1 4 855 210 162 0 0 chr12 35391098 35391135 -85866395 + T-rich Low_complexity Low_complexity 4 40 0 4 855 249 361 0 0 chr12 35391180 35391252 -85866278 + ID4_ SINE ID 2 73 -10 4 855 21 0 0 0 chr12 35391252 35391273 -85866257 + AT_rich Low_complexity Low_complexity 1 21 0 4 855 1843 208 29 6 chr12 35392706 35393055 -85864475 + ORR1B2 LTR MaLR 3 359 -8 5 855 23 0 0 0 chr12 35393919 35393942 -85863588 + AT_rich Low_complexity Low_complexity 1 23 0 5 855 743 326 73 8 chr12 35394218 35394465 -85863065 + B4 SINE B4 30 292 0 5 855 345 162 0 0 chr12 35394491 35394528 -85863002 + polypurine Low_complexity Low_complexity 1 37 0 5 855 1113 8 0 0 chr12 35394528 35394654 -85862876 + (GAA)n Simple_repeat Simple_repeat 3 128 0 5 855 345 162 0 0 chr12 35394654 35394696 -85862834 + polypurine Low_complexity Low_complexity 38 79 0 5 855 434 368 5 35 chr12 35394846 35395046 -85862484 - MER20 DNA MER1_type -2 217 24 5 855 191 207 0 33 chr12 35396525 35396585 -85860945 + CT-rich Low_complexity Low_complexity 4 61 0 5 855 189 0 0 0 chr12 35396615 35396636 -85860894 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 5 855 21 0 0 0 chr12 35397477 35397498 -85860032 + AT_rich Low_complexity Low_complexity 1 21 0 5 855 220 337 108 32 chr12 35397504 35397709 -85859821 + MIRm SINE MIR 36 267 -1 5 855 236 253 93 0 chr12 35398299 35398374 -85859156 - MIR SINE MIR -91 171 90 5 855 1133 62 7 0 chr12 35400167 35400313 -85857217 + B1_Mus2 SINE Alu 1 147 0 5 855 515 273 9 0 chr12 35401328 35401438 -85856092 + B3 SINE B2 1 111 -105 5 855 783 297 27 94 chr12 35401942 35402198 -85855332 + B4 SINE B4 36 274 -18 5 855 467 33 0 16 chr12 35402250 35402312 -85855218 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 855 3371 137 42 22 chr12 35402587 35403186 -85854344 + Lx3C LINE L1 6365 6975 -1 5 855 180 358 49 63 chr12 35404188 35404331 -85853199 - L3 LINE CR1 -841 3648 3508 5 855 801 0 0 0 chr12 35404778 35404867 -85852663 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 5 855 314 364 42 21 chr12 35405578 35405769 -85851761 - MIRb SINE MIR -72 196 2 5 855 289 282 60 60 chr12 35406277 35406394 -85851136 - PB1D10 SINE Alu 0 117 1 5 855 300 210 0 0 chr12 35406867 35406948 -85850582 + (TG)n Simple_repeat Simple_repeat 1 81 0 5 855 205 239 0 107 chr12 35407250 35407325 -85850205 + L3 LINE CR1 2496 2562 -1927 5 855 325 353 78 51 chr12 35410221 35410594 -85846936 - L2 LINE L2 -342 3077 2695 5 855 303 28 0 0 chr12 35410678 35410714 -85846816 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 855 261 330 28 57 chr12 35410718 35410824 -85846706 - B4A SINE B4 -17 275 173 5 855 285 222 69 69 chr12 35410857 35410944 -85846586 - B4A SINE B4 -201 91 5 5 855 6969 88 22 9 chr12 35411247 35412473 -85845057 - L1_Mus4 LINE L1 -6 6630 5390 5 855 5072 101 14 54 chr12 35412472 35414155 -85843375 - L1VL4 LINE L1 -1870 1689 29 5 855 21 0 0 0 chr12 35414669 35414690 -85842840 + AT_rich Low_complexity Low_complexity 1 21 0 5 855 898 294 10 0 chr12 35414757 35414954 -85842576 + B3 SINE B2 8 206 -10 5 855 523 319 121 25 chr12 35415231 35415556 -85841974 - MTEb LTR MaLR -7 372 4 5 855 25 0 0 0 chr12 35415878 35415903 -85841627 + AT_rich Low_complexity Low_complexity 1 25 0 5 855 3118 281 76 23 chr12 35416460 35417625 -85839905 - Lx8 LINE L1 -1 7472 6246 5 855 34844 52 12 4 chr12 35418269 35423774 -85833756 + L1Md_T LINE L1 99 5586 -297 5 855 8068 54 0 0 chr12 35423774 35424770 -85832760 + L1Md_T LINE L1 5587 6582 0 5 855 246 32 0 0 chr12 35425035 35425066 -85832464 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 855 304 354 67 62 chr12 35425192 35425385 -85832145 + MER20 DNA MER1_type 26 219 0 5 855 1038 255 118 21 chr12 35427263 35427780 -85829750 + L1MA8 LINE L1 5623 6189 -102 5 855 555 328 121 71 chr12 35428369 35428492 -85829038 + Charlie1a DNA MER1_type 82 201 -1254 5 855 189 0 0 0 chr12 35428492 35428513 -85829017 + (GACTG)n Simple_repeat Simple_repeat 4 24 0 5 855 555 328 121 71 chr12 35428513 35428529 -85829001 + Charlie1a DNA MER1_type 202 213 -1242 5 855 234 0 0 0 chr12 35428529 35428555 -85828975 + (GACTG)n Simple_repeat Simple_repeat 4 29 0 5 855 555 328 121 71 chr12 35428555 35428991 -85828539 + Charlie1a DNA MER1_type 214 687 -768 5 855 304 268 268 50 chr12 35429129 35429428 -85828102 + Charlie1a DNA MER1_type 865 1228 -227 5 855 987 72 63 28 chr12 35429430 35429573 -85827957 - B1_Mus1 SINE Alu 0 148 1 5 855 277 350 34 81 chr12 35429717 35429866 -85827664 + B1_Mus2 SINE Alu 3 144 -3 5 855 3981 83 0 11 chr12 35429894 35430439 -85827091 - L1Md_F2 LINE L1 -2 6580 6042 5 855 1183 69 0 0 chr12 35430519 35430664 -85826866 + B1_Mus2 SINE Alu 3 147 0 5 855 228 200 0 0 chr12 35430922 35430977 -85826553 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 855 572 255 175 16 chr12 35431069 35431452 -85826078 - L1M4c LINE L1 -3309 3335 2892 5 855 225 94 0 0 chr12 35431656 35431688 -85825842 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 855 385 340 35 69 chr12 35431838 35432012 -85825518 - B4A SINE B4 -121 171 4 5 855 703 282 63 0 chr12 35432129 35432413 -85825117 - L1M4c LINE L1 -4632 2014 1713 5 855 253 327 58 0 chr12 35432556 35432660 -85824870 + PB1D10 SINE Alu 2 111 -6 5 855 435 277 110 28 chr12 35432753 35433117 -85824413 - L1M4c LINE L1 -5035 1507 1114 5 855 473 273 74 37 chr12 35433572 35433753 -85823777 + ORR1D2 LTR MaLR 167 376 -3 5 855 1326 275 92 35 chr12 35433757 35434281 -85823249 + Lx9 LINE L1 6320 6825 -819 5 855 1148 229 179 20 chr12 35434504 35434861 -85822669 - MTD LTR MaLR 0 419 6 5 855 180 0 0 0 chr12 35435520 35435540 -85821990 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 855 1032 88 0 0 chr12 35435542 35435678 -85821852 - B1_Mus1 SINE Alu -10 138 3 5 855 1134 306 54 15 chr12 35437047 35437512 -85820018 + Lx8 LINE L1 6989 7471 -2 5 855 21 0 0 0 chr12 35437778 35437799 -85819731 + AT_rich Low_complexity Low_complexity 1 21 0 5 855 1482 172 7 35 chr12 35438984 35439273 -85818257 + Lx6 LINE L1 6479 6759 -701 5 855 2683 138 117 4 chr12 35439273 35439769 -85817761 - RMER4B LTR ERVK 0 585 34 5 855 6096 120 26 4 chr12 35439783 35440721 -85816809 - Lx2 LINE L1 -2 6995 6038 5 855 1413 68 29 10 chr12 35440721 35440930 -85816600 + Lx2 LINE L1 5803 6015 -982 5 855 1765 31 9 4 chr12 35440930 35441155 -85816375 - L1Md_F3 LINE L1 0 6584 6359 5 855 287 65 43 0 chr12 35441174 35441220 -85816310 - RMER4B LTR ERVK -535 50 3 5 855 3273 205 32 9 chr12 35441227 35441907 -85815623 + Lx6 LINE L1 6761 7456 -4 5 855 23 0 0 0 chr12 35442176 35442199 -85815331 + AT_rich Low_complexity Low_complexity 1 23 0 5 855 330 298 221 39 chr12 35442866 35443431 -85814099 + L2b LINE L2 2025 2692 -727 5 855 195 352 32 74 chr12 35444051 35444146 -85813384 + L2b LINE L2 3238 3328 -47 5 855 1027 159 124 5 chr12 35444171 35444373 -85813157 + URR1A DNA MER1_type 1 226 0 5 855 477 0 0 0 chr12 35445244 35445297 -85812233 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 855 11118 102 11 38 chr12 35447946 35450577 -85806953 + L1_Mus3 LINE L1 4003 6549 -89 5 855 739 55 46 0 chr12 35450579 35450688 -85806842 - BC1_Mm scRNA scRNA -38 114 1 5 855 317 43 21 0 chr12 35450695 35450742 -85806788 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 855 453 89 0 25 chr12 35450746 35450827 -85806703 + L1_Mus4 LINE L1 6558 6636 0 5 855 720 0 0 0 chr12 35451819 35451899 -85805631 + (TAAAA)n Simple_repeat Simple_repeat 2 81 0 5 855 309 314 135 75 chr12 35453321 35453521 -85804009 - MTE2a LTR MaLR -154 225 14 5 855 1017 205 45 0 chr12 35453787 35453987 -85803543 + B3 SINE B2 2 210 -6 5 855 26 0 0 0 chr12 35453994 35454020 -85803510 + AT_rich Low_complexity Low_complexity 1 26 0 5 855 594 261 96 24 chr12 35455311 35455519 -85802011 + ID_B1 SINE B4 2 224 0 5 855 296 94 0 19 chr12 35455533 35455587 -85801943 + (GGA)n Simple_repeat Simple_repeat 3 55 0 5 855 630 261 38 22 chr12 35455629 35455813 -85801717 - MamGypLTR2b LTR Gypsy -15 907 721 5 855 308 265 97 62 chr12 35455879 35456024 -85801506 - MER5A DNA MER1_type -23 166 17 5 855 247 326 15 44 chr12 35456368 35456503 -85801027 + MIRc SINE MIR 70 200 -68 5 855 884 224 22 0 chr12 35457549 35457728 -85799802 + B3A SINE B2 1 183 -15 5 855 830 297 93 23 chr12 35457879 35458204 -85799326 + ORR1D2 LTR MaLR 1 380 -4 5 855 180 0 0 0 chr12 35458319 35458339 -85799191 + (T)n Simple_repeat Simple_repeat 1 20 0 5 855 186 128 0 0 chr12 35459518 35459557 -85797973 + (T)n Simple_repeat Simple_repeat 1 39 0 5 855 917 55 0 8 chr12 35459667 35459796 -85797734 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 5 855 243 233 95 14 chr12 35459821 35459895 -85797635 - L2c LINE L2 -52 3335 3256 5 855 187 106 20 41 chr12 35462362 35462411 -85795119 + T-rich Low_complexity Low_complexity 3 50 0 5 855 454 311 17 72 chr12 35463719 35463899 -85793631 + B4 SINE B4 2 171 -121 5 855 222 37 0 0 chr12 35463983 35464010 -85793520 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 855 284 238 37 24 chr12 35464124 35464206 -85793324 + Arthur1A DNA Tip100 2 84 -93 5 855 408 40 0 0 chr12 35466315 35466365 -85791165 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 855 288 271 0 0 chr12 35467213 35467272 -85790258 - MER2B DNA MER2_type -272 64 6 5 855 356 115 0 0 chr12 35470540 35470592 -85786938 - HAL1-3A_ME LINE L1 -831 2027 1976 5 855 209 207 0 11 chr12 35470592 35470680 -85786850 + (TG)n Simple_repeat Simple_repeat 1 87 0 5 855 244 0 0 53 chr12 35470724 35470762 -85786768 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 855 255 204 28 23 chr12 35470809 35470916 -85786614 - B2_Mm2 SINE B2 -4 191 47 5 855 1146 114 11 11 chr12 35470963 35471141 -85786389 - B2_Mm1t SINE B2 -14 179 2 5 855 722 114 0 16 chr12 35472629 35472754 -85784776 + (GGGA)n Simple_repeat Simple_repeat 3 125 0 5 855 189 0 0 0 chr12 35472752 35472773 -85784757 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 855 26 50 0 0 chr12 35473242 35473282 -85784248 + AT_rich Low_complexity Low_complexity 1 40 0 5 855 266 297 86 50 chr12 35473480 35473781 -85783749 + L1M5 LINE L1 5469 5780 -344 5 855 381 282 196 18 chr12 35474006 35474257 -85783273 + MLT1F LTR MaLR 123 420 -149 5 855 528 16 0 0 chr12 35474835 35474896 -85782634 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 855 228 309 43 60 chr12 35475947 35476064 -85781466 + MIRb SINE MIR 126 240 -28 6 855 30 69 0 0 chr12 35477598 35477656 -85779874 + AT_rich Low_complexity Low_complexity 1 58 0 6 855 291 244 26 0 chr12 35478064 35478142 -85779388 - B3A SINE B2 -118 80 1 6 855 189 0 0 0 chr12 35478696 35478717 -85778813 + (CG)n Simple_repeat Simple_repeat 1 21 0 6 855 240 35 0 0 chr12 35478717 35478745 -85778785 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 855 291 258 0 0 chr12 35480699 35480761 -85776769 + ID4 SINE ID 5 66 -17 6 855 2684 103 38 21 chr12 35480858 35481276 -85776254 + Lx LINE L1 6225 6649 -5 6 855 205 88 29 0 chr12 35481283 35481317 -85776213 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 855 237 132 0 0 chr12 35482187 35482225 -85775305 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 855 443 112 16 49 chr12 35482263 35482385 -85775145 + (CAGAGA)n Simple_repeat Simple_repeat 4 121 0 6 855 269 159 0 16 chr12 35483260 35483324 -85774206 + (TAAA)n Simple_repeat Simple_repeat 4 66 0 6 855 423 224 249 0 chr12 35483462 35483627 -85773903 - B3 SINE B2 -8 208 3 6 855 811 176 52 66 chr12 35484133 35484346 -85773184 + B3 SINE B2 1 210 -6 6 855 230 338 65 0 chr12 35484583 35484722 -85772808 + Lx8 LINE L1 7139 7286 -187 6 855 491 348 0 0 chr12 35484868 35485046 -85772484 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 855 239 264 25 98 chr12 35486468 35486590 -85770940 - MIR SINE MIR -37 225 113 6 855 375 288 52 22 chr12 35486617 35486752 -85770778 + B1F1 SINE Alu 10 148 -1 6 855 364 182 23 0 chr12 35486829 35486917 -85770613 + GA-rich Low_complexity Low_complexity 2 91 0 6 855 1537 144 56 42 chr12 35489348 35489788 -85767742 + RMER17C LTR ERVK 16 439 -519 6 855 225 0 0 0 chr12 35489886 35489911 -85767619 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 855 1057 241 156 6 chr12 35490178 35490512 -85767018 + ORR1C2 LTR MaLR 1 384 0 6 855 1431 59 0 0 chr12 35490601 35490855 -85766675 + (CA)n Simple_repeat Simple_repeat 1 254 0 6 855 189 0 0 0 chr12 35491959 35491980 -85765550 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 855 315 0 0 0 chr12 35491996 35492031 -85765499 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 855 1113 80 0 0 chr12 35492147 35492284 -85765246 + B1_Mm SINE Alu 2 138 -9 6 855 22 0 0 0 chr12 35492296 35492318 -85765212 + AT_rich Low_complexity Low_complexity 1 22 0 6 855 2323 209 55 5 chr12 35492318 35492885 -85764645 + Lx9 LINE L1 7040 7634 -10 6 855 244 279 0 104 chr12 35494100 35494196 -85763334 + MER46C DNA MER2_type 54 139 -199 6 855 21 57 0 0 chr12 35494742 35494777 -85762753 + AT_rich Low_complexity Low_complexity 1 35 0 6 855 260 225 0 59 chr12 35495098 35495183 -85762347 - Lx7 LINE L1 -15 7681 7602 6 855 897 227 16 47 chr12 35495650 35495904 -85761626 + Lx9 LINE L1 7171 7416 -228 6 855 222 128 0 0 chr12 35495904 35495943 -85761587 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 855 299 237 59 8 chr12 35495945 35496064 -85761466 + Lx9 LINE L1 7520 7644 0 6 855 579 339 22 0 chr12 35497781 35497961 -85759569 - MTE2a LTR MaLR 0 379 196 6 855 233 286 12 12 chr12 35499003 35499088 -85758442 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 6 855 575 51 13 0 chr12 35499879 35499958 -85757572 + (GA)n Simple_repeat Simple_repeat 2 81 0 6 855 930 162 202 0 chr12 35500113 35500286 -85757244 - B3 SINE B2 -8 208 1 1 855 278 239 108 99 chr12 35500321 35500491 -85757039 - MIRc SINE MIR -95 167 1 2 855 216 220 0 17 chr12 35501112 35501172 -85756358 + (CAT)n Simple_repeat Simple_repeat 1 59 0 3 855 300 234 91 0 chr12 35502018 35502095 -85755435 - BC1_Mm scRNA scRNA -68 84 1 4 855 315 0 0 0 chr12 35502365 35502400 -85755130 + (A)n Simple_repeat Simple_repeat 1 35 0 5 855 375 303 66 62 chr12 35502824 35503035 -85754495 - MER115 DNA Tip100 -1 692 481 6 855 222 254 0 48 chr12 35503857 35503919 -85753611 + L2a LINE L2 3368 3426 0 7 855 180 0 0 0 chr12 35504646 35504666 -85752864 + (A)n Simple_repeat Simple_repeat 1 20 0 8 855 1000 259 54 61 chr12 35505775 35506054 -85751476 + B4 SINE B4 16 292 0 9 855 382 258 1 14 chr12 35506297 35506399 -85751131 + PB1D9 SINE Alu 1 100 -20 1 855 763 210 60 5 chr12 35506971 35507172 -85750358 - RMER1B Other Other 0 1066 855 1 855 308 315 11 11 chr12 35507204 35507294 -85750236 + MLT1J1 LTR MaLR 51 140 -304 1 855 203 262 30 15 chr12 35509382 35509448 -85748082 - MER5A DNA MER1_type -107 82 16 1 855 216 307 55 5 chr12 35509635 35509724 -85747806 + L2b LINE L2 3302 3426 0 1 855 195 344 79 39 chr12 35510975 35511019 -85746511 + MER5A DNA MER1_type 50 93 -96 1 855 1876 188 13 35 chr12 35511019 35511394 -85746136 - ORR1B2 LTR MaLR 0 367 1 1 855 195 344 79 39 chr12 35511394 35511476 -85746054 + MER5A DNA MER1_type 94 180 -9 1 855 192 284 124 21 chr12 35512668 35512765 -85744765 + MIR SINE MIR 32 138 -70 1 855 250 303 26 13 chr12 35512784 35512861 -85744669 + ID4 SINE ID 2 79 -4 1 855 209 194 0 0 chr12 35513415 35513451 -85744079 + A-rich Low_complexity Low_complexity 4 39 0 1 855 26 0 0 0 chr12 35514124 35514150 -85743380 + AT_rich Low_complexity Low_complexity 1 26 0 2 855 2904 340 70 22 chr12 35514341 35514675 -85742855 + Lx8 LINE L1 5813 6189 -1284 2 855 606 14 0 0 chr12 35514675 35514746 -85742784 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 855 2904 302 50 28 chr12 35514746 35515888 -85741642 + Lx8 LINE L1 6190 7363 -110 2 855 681 13 0 0 chr12 35515888 35515966 -85741564 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 855 2904 302 50 28 chr12 35515966 35516058 -85741472 + Lx8 LINE L1 7364 7457 -16 2 855 520 339 29 0 chr12 35516981 35517152 -85740378 - B4A SINE B4 -116 176 1 2 855 530 294 6 74 chr12 35518426 35518602 -85738928 + B4A SINE B4 129 292 0 2 855 522 0 0 0 chr12 35518633 35518691 -85738839 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 855 257 350 40 16 chr12 35518704 35518829 -85738701 + B1F SINE Alu 5 132 -17 2 855 1408 265 29 5 chr12 35519502 35520012 -85737518 - Lx5 LINE L1 -574 6886 6427 2 856 23 0 0 0 chr12 35521445 35521468 -85736062 + AT_rich Low_complexity Low_complexity 1 23 0 2 856 186 167 0 0 chr12 35521688 35521724 -85735806 + GA-rich Low_complexity Low_complexity 2 37 0 3 856 289 297 134 8 chr12 35522153 35522272 -85735258 + MIRb SINE MIR 80 213 -55 3 856 1511 197 50 33 chr12 35522771 35523134 -85734396 - ORR1D1 LTR MaLR -3 371 3 3 856 201 147 0 0 chr12 35525454 35525488 -85732042 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 856 455 303 89 74 chr12 35526191 35526462 -85731068 + B4 SINE B4 1 275 -17 3 856 885 45 0 0 chr12 35526482 35526592 -85730938 + (CA)n Simple_repeat Simple_repeat 2 111 0 3 856 1145 75 0 0 chr12 35526927 35527074 -85730456 + B1_Mm SINE Alu 1 147 0 3 856 243 240 27 0 chr12 35527392 35527467 -85730063 + L1M5 LINE L1 5460 5536 -704 3 856 364 243 26 138 chr12 35527526 35527714 -85729816 + MLT1E2 LTR MaLR 12 170 -335 3 856 594 244 61 0 chr12 35527726 35527857 -85729673 - B1F SINE Alu -2 147 9 3 856 310 349 95 7 chr12 35527899 35528046 -85729484 - RSINE1 SINE B4 -2 163 4 4 856 426 278 109 18 chr12 35528606 35528771 -85728759 + B3A SINE B2 3 182 -16 4 856 23 54 0 0 chr12 35528784 35528821 -85728709 + AT_rich Low_complexity Low_complexity 1 37 0 4 856 388 51 17 17 chr12 35528838 35528898 -85728632 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 856 436 247 48 107 chr12 35528909 35529077 -85728453 - RSINE1 SINE B4 -6 159 2 4 856 387 0 0 0 chr12 35531966 35532009 -85725521 + (GAA)n Simple_repeat Simple_repeat 2 44 0 4 856 231 114 0 0 chr12 35532009 35532044 -85725486 + (ATG)n Simple_repeat Simple_repeat 1 35 0 4 856 367 346 8 30 chr12 35532494 35532628 -85724902 + B4 SINE B4 161 291 -1 4 856 794 277 0 13 chr12 35533088 35533245 -85724285 - RSINE1 SINE B4 -8 157 3 4 856 1121 106 0 6 chr12 35533409 35533590 -85723940 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 4 856 738 143 0 0 chr12 35533596 35533729 -85723801 + (CTTG)n Simple_repeat Simple_repeat 2 134 0 5 856 191 250 0 55 chr12 35534472 35534527 -85723003 + L4 LINE RTE 1337 1388 -641 5 856 21 0 0 0 chr12 35534634 35534655 -85722875 + AT_rich Low_complexity Low_complexity 1 21 0 5 856 1428 66 0 0 chr12 35535184 35535624 -85721906 + (TG)n Simple_repeat Simple_repeat 1 440 0 5 856 198 0 0 0 chr12 35535624 35535645 -85721885 + (GA)n Simple_repeat Simple_repeat 1 22 0 5 856 195 42 0 0 chr12 35535651 35535675 -85721855 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 856 21 36 0 0 chr12 35535752 35535780 -85721750 + AT_rich Low_complexity Low_complexity 1 28 0 5 856 402 265 58 26 chr12 35536590 35536779 -85720751 - RMER15 LTR ERVL -5 570 352 5 856 293 327 106 26 chr12 35537092 35537243 -85720287 - MLT1D LTR MaLR -310 195 33 5 856 22 0 0 0 chr12 35537409 35537431 -85720099 + AT_rich Low_complexity Low_complexity 1 22 0 5 856 288 286 61 92 chr12 35537790 35537914 -85719616 - B3A SINE B2 -3 195 76 6 856 1050 261 147 6 chr12 35537914 35538269 -85719261 + MTD LTR MaLR 1 405 -14 6 856 288 224 89 38 chr12 35538279 35538358 -85719172 - B3A SINE B2 -115 83 1 6 856 199 114 45 0 chr12 35539580 35539624 -85717906 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 856 323 211 0 10 chr12 35542025 35542121 -85715409 + (CA)n Simple_repeat Simple_repeat 2 96 0 6 856 9160 95 7 13 chr12 35543528 35545364 -85712166 + Lx3A LINE L1 5138 6959 -22 6 856 183 42 0 0 chr12 35545376 35545400 -85712130 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 856 487 258 105 68 chr12 35545424 35545690 -85711840 - ORR1E LTR MaLR -65 294 19 6 856 618 197 8 38 chr12 35546261 35546393 -85711137 + ID_B1 SINE B4 93 220 -4 6 856 430 148 68 0 chr12 35546502 35546590 -85710940 + L1MB8 LINE L1 6078 6171 -7 6 856 387 0 0 0 chr12 35546675 35546718 -85710812 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 856 315 0 0 0 chr12 35546718 35546752 -85710778 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 856 231 36 0 0 chr12 35549284 35549312 -85708218 + (ATGGTG)n Simple_repeat Simple_repeat 1 28 0 7 856 479 226 75 62 chr12 35549319 35549465 -85708065 - B1_Mur2 SINE Alu 0 149 2 7 856 446 264 74 0 chr12 35549465 35549613 -85707917 + MER53 DNA hAT 32 190 -3 7 856 181 188 0 0 chr12 35550265 35550297 -85707233 + MIRc SINE MIR 17 48 -220 7 856 568 288 100 22 chr12 35552584 35552815 -85704715 + Tigger16b DNA Tigger 85 333 -4 7 856 5380 32 2 0 chr12 35553200 35553830 -85703700 + L1Md_T LINE L1 5951 6581 -1 7 856 225 108 0 0 chr12 35554146 35554183 -85703347 + (TGG)n Simple_repeat Simple_repeat 2 38 0 7 856 180 160 115 39 chr12 35555743 35555795 -85701735 + L2 LINE L2 2829 2884 -535 7 856 971 249 149 6 chr12 35556707 35556772 -85700758 - MTD LTR MaLR 0 419 341 7 856 192 40 0 0 chr12 35556772 35556797 -85700733 + (TTG)n Simple_repeat Simple_repeat 2 26 0 8 856 971 249 149 6 chr12 35556797 35557059 -85700471 - MTD LTR MaLR -79 340 46 7 856 425 257 210 6 chr12 35558438 35558614 -85698916 - B3 SINE B2 -4 212 1 8 856 240 314 25 8 chr12 35558850 35558969 -85698561 + MIRb SINE MIR 132 252 -16 8 856 555 329 79 28 chr12 35559188 35559582 -85697948 - MLT1C LTR MaLR 0 467 54 8 856 324 254 107 25 chr12 35560405 35560526 -85697004 + ID_B1 SINE B4 93 223 -1 8 856 612 73 0 0 chr12 35561115 35561197 -85696333 + (TC)n Simple_repeat Simple_repeat 1 82 0 8 856 225 0 0 0 chr12 35561197 35561221 -85696309 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 856 23 0 0 0 chr12 35561448 35561471 -85696059 + AT_rich Low_complexity Low_complexity 1 23 0 8 856 401 345 72 33 chr12 35561512 35561665 -85695865 - RSINE1 SINE B4 0 165 7 8 856 470 290 129 40 chr12 35562487 35562735 -85694795 + B4A SINE B4 1 270 -22 8 856 320 64 0 21 chr12 35562735 35562783 -85694747 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 856 446 259 9 26 chr12 35562879 35562994 -85694536 - PB1D10 SINE Alu 0 117 5 9 856 321 198 0 0 chr12 35563206 35563287 -85694243 + (TG)n Simple_repeat Simple_repeat 2 82 0 9 856 324 290 24 8 chr12 35564152 35564195 -85693335 - MER63D DNA AcHobo -5 1056 1012 9 856 684 35 0 0 chr12 35564195 35564282 -85693248 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 856 324 290 24 8 chr12 35564282 35564363 -85693167 - MER63D DNA AcHobo -50 1011 931 9 856 262 316 142 30 chr12 35564369 35564601 -85692929 - MER63D DNA AcHobo -478 583 326 9 856 266 346 15 15 chr12 35564706 35564841 -85692689 - MER63D DNA AcHobo -920 141 7 9 856 300 296 12 0 chr12 35566639 35566720 -85690810 - ID2 SINE ID 0 83 2 9 856 312 237 50 30 chr12 35567462 35567562 -85689968 + MLT1A1 LTR MaLR 307 408 0 9 856 315 286 95 0 chr12 35568325 35568430 -85689100 + LTR16C LTR ERVL 4 118 -371 9 856 1942 156 43 8 chr12 35569227 35569443 -85688087 - MTC LTR MaLR 0 421 205 9 856 760 38 0 19 chr12 35569443 35569550 -85687980 - L1Md_T LINE L1 0 6582 6478 9 856 1942 156 43 8 chr12 35569550 35569708 -85687822 - MTC LTR MaLR -217 204 34 9 856 365 292 65 12 chr12 35569931 35570101 -85687429 - L1MB7 LINE L1 -23 6161 5983 1 856 395 157 11 0 chr12 35570278 35570367 -85687163 + CT-rich Low_complexity Low_complexity 1 90 0 1 856 203 125 0 24 chr12 35571266 35571307 -85686223 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 1 856 285 349 78 55 chr12 35571615 35571870 -85685660 - MLT1J LTR MaLR -244 268 8 1 856 480 340 14 0 chr12 35572665 35572809 -85684721 - RSINE1 SINE B4 -18 147 2 1 856 3686 238 42 28 chr12 35572898 35573823 -85683707 + Lx7 LINE L1 6466 7403 -293 1 856 426 20 0 0 chr12 35573823 35573874 -85683656 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 856 335 333 0 10 chr12 35574140 35574243 -85683287 - PB1D10 SINE Alu -6 111 10 1 856 341 339 123 51 chr12 35574646 35574938 -85682592 + L1MEf LINE L1 299 611 -5789 1 856 1202 95 0 6 chr12 35575224 35575404 -85682126 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 856 273 252 235 41 chr12 35575426 35575890 -85681640 + L1MEf LINE L1 908 1461 -4939 1 856 239 157 20 0 chr12 35575940 35575991 -85681539 + (CATA)n Simple_repeat Simple_repeat 1 52 0 1 856 483 322 40 29 chr12 35576099 35576371 -85681159 + L1MEf LINE L1 1665 1939 -4476 1 856 707 174 170 16 chr12 35576488 35576738 -85680792 - Lx5 LINE L1 0 7058 6727 1 856 391 297 35 28 chr12 35576816 35576958 -85680572 - B4A SINE B4 -149 143 1 1 856 518 180 21 7 chr12 35578573 35578713 -85678817 + GA-rich Low_complexity Low_complexity 3 144 0 1 856 781 165 12 0 chr12 35578747 35578911 -85678619 + GA-rich Low_complexity Low_complexity 1 166 0 1 856 1008 103 11 22 chr12 35578930 35579109 -85678421 + (CAGA)n Simple_repeat Simple_repeat 4 180 0 1 856 2365 218 162 77 chr12 35580242 35581577 -85675953 + RMER1B Other Other 27 1055 -11 1 856 228 86 0 0 chr12 35581577 35581612 -85675918 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 856 495 0 0 0 chr12 35581612 35581666 -85675864 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 856 716 128 59 22 chr12 35581670 35581806 -85675724 + B1_Mur3 SINE Alu 9 149 0 1 856 282 257 140 9 chr12 35582211 35582325 -85675205 + ID_B1 SINE B4 92 220 -4 1 856 198 0 0 0 chr12 35582640 35582662 -85674868 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 1 856 1410 94 0 2 chr12 35583181 35583586 -85673944 + (GAA)n Simple_repeat Simple_repeat 1 404 0 1 856 261 282 75 9 chr12 35585218 35585330 -85672200 + MIR SINE MIR 3 125 -143 1 856 916 133 0 27 chr12 35585883 35586068 -85671462 + CT-rich Low_complexity Low_complexity 1 180 0 1 856 432 0 0 0 chr12 35586468 35586516 -85671014 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 856 505 244 16 31 chr12 35586516 35586635 -85670895 + B3 SINE B2 13 129 -87 1 856 323 96 19 0 chr12 35586678 35586730 -85670800 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 856 501 326 63 44 chr12 35586767 35587037 -85670493 + MLT1E1A LTR MaLR 304 578 -102 1 856 909 81 37 6 chr12 35587811 35587973 -85669557 + (GGGA)n Simple_repeat Simple_repeat 3 169 0 1 856 378 0 0 0 chr12 35588525 35588567 -85668963 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 856 486 0 0 0 chr12 35588784 35588838 -85668692 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 856 501 163 0 0 chr12 35589215 35589307 -85668223 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 856 270 167 48 19 chr12 35591593 35591762 -85665768 + (CGCGG)n Simple_repeat Simple_repeat 1 173 0 1 856 223 85 21 21 chr12 35591791 35591839 -85665691 + (CGGGG)n Simple_repeat Simple_repeat 5 52 0 1 856 423 0 0 0 chr12 35592210 35592257 -85665273 + (TTG)n Simple_repeat Simple_repeat 3 49 0 1 856 21 0 0 0 chr12 35592595 35592616 -85664914 + AT_rich Low_complexity Low_complexity 1 21 0 1 856 704 63 0 31 chr12 35593492 35593622 -85663908 - L1_Mus4 LINE L1 0 6636 6511 1 856 22 56 0 0 chr12 35593758 35593794 -85663736 + AT_rich Low_complexity Low_complexity 1 36 0 1 856 615 245 80 0 chr12 35594427 35594627 -85662903 - L1MC3 LINE L1 -192 7593 7378 1 856 320 284 59 7 chr12 35594706 35594841 -85662689 - L1MC3 LINE L1 -509 7276 7135 1 856 299 297 8 0 chr12 35595107 35595225 -85662305 + L1M4c LINE L1 1273 1391 -4993 1 856 588 264 21 0 chr12 35595294 35595438 -85662092 - B1_Mur1 SINE Alu -2 147 1 1 856 256 235 0 0 chr12 35595442 35595493 -85662037 - L1M2 LINE L1 -3881 2262 2212 1 856 743 265 47 143 chr12 35595539 35595675 -85661855 + L1M4c LINE L1 5152 5280 -1096 1 856 1184 269 14 7 chr12 35595675 35595959 -85661571 + B4 SINE B4 1 286 -6 1 856 872 254 54 90 chr12 35595959 35596405 -85661125 + L1M4c LINE L1 5278 5688 -839 1 856 320 357 0 0 chr12 35598037 35598121 -85659409 - RSINE1 SINE B4 -28 137 54 1 856 23 0 0 0 chr12 35598363 35598386 -85659144 + AT_rich Low_complexity Low_complexity 1 23 0 1 856 513 0 0 0 chr12 35598485 35598542 -85658988 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 856 1892 124 29 0 chr12 35598621 35598927 -85658603 + ORR1A2 LTR MaLR 5 319 -8 1 856 1183 75 0 0 chr12 35599086 35599232 -85658298 + B1_Mus1 SINE Alu 3 148 0 1 856 538 276 111 12 chr12 35599990 35600162 -85657368 + B4 SINE B4 86 274 -18 1 856 29 0 0 0 chr12 35601005 35601034 -85656496 + AT_rich Low_complexity Low_complexity 1 29 0 1 856 192 97 0 0 chr12 35601319 35601350 -85656180 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 856 779 272 113 12 chr12 35601718 35602046 -85655484 - MTEa LTR MaLR -5 374 14 1 856 1599 284 102 29 chr12 35602047 35602638 -85654892 - MTEa-int LTR MaLR -51 1529 896 1 856 730 181 76 38 chr12 35602651 35602835 -85654695 + Lx9 LINE L1 7312 7502 -142 1 856 627 186 0 30 chr12 35602972 35603105 -85654425 + Lx9 LINE L1 7509 7637 -7 1 856 213 93 0 53 chr12 35603135 35603192 -85654338 + (TAAAAA)n Simple_repeat Simple_repeat 1 54 0 1 856 206 118 0 0 chr12 35603194 35603228 -85654302 + (A)n Simple_repeat Simple_repeat 1 34 0 1 856 1873 288 113 53 chr12 35603228 35604043 -85653487 - MTEa-int LTR MaLR -711 869 6 1 856 1003 261 96 42 chr12 35604060 35604416 -85653114 - MTEa LTR MaLR -4 375 1 1 856 334 301 107 30 chr12 35604496 35604664 -85652866 - MIR SINE MIR -79 183 3 1 856 354 286 46 85 chr12 35605647 35605800 -85651730 + B4A SINE B4 1 147 -145 1 856 1005 108 29 0 chr12 35605897 35606036 -85651494 + B1_Mus1 SINE Alu 1 143 -5 1 856 789 41 0 0 chr12 35607109 35607206 -85650324 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 856 416 214 9 0 chr12 35608025 35608137 -85649393 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 856 341 328 85 15 chr12 35608726 35608927 -85648603 + HAL1 LINE L1 9 223 -2284 1 856 898 81 36 14 chr12 35609194 35609332 -85648198 + B1_Mur4 SINE Alu 5 145 -5 1 856 256 78 59 0 chr12 35609340 35609391 -85648139 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 1 856 1983 113 6 32 chr12 35609394 35609560 -85647970 + Lx2 LINE L1 6694 6856 -141 1 856 3649 8 2 0 chr12 35609560 35609955 -85647575 - MTA_Mm LTR MaLR 0 396 1 1 856 1983 113 6 32 chr12 35609955 35610100 -85647430 + Lx2 LINE L1 6857 6997 0 1 856 449 181 0 11 chr12 35610108 35610203 -85647327 + GA-rich Low_complexity Low_complexity 3 96 0 1 856 2509 60 0 6 chr12 35610304 35610622 -85646908 - L1Md_F2 LINE L1 -8 6574 6259 1 856 2646 41 6 0 chr12 35610622 35610938 -85646592 + L1Md_F2 LINE L1 5699 6016 -566 1 856 271 376 65 45 chr12 35611181 35611473 -85646057 - LTR16A LTR ERVL -1 450 153 1 856 441 0 0 0 chr12 35611826 35611875 -85645655 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 856 423 0 0 0 chr12 35611875 35611921 -85645609 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 856 2109 190 20 12 chr12 35612946 35613345 -85644185 - MTD LTR MaLR 0 419 18 1 856 350 251 178 11 chr12 35613459 35613644 -85643886 + L2a LINE L2 2534 2749 -670 1 856 209 339 48 32 chr12 35613774 35613899 -85643631 + L2a LINE L2 2987 3113 -313 1 856 820 250 100 8 chr12 35615330 35615580 -85641950 - B4A SINE B4 -18 274 2 1 856 238 354 0 12 chr12 35615763 35615843 -85641687 + ID4 SINE ID 1 79 -4 1 856 1780 279 125 32 chr12 35615906 35616587 -85640943 + Lx8 LINE L1 6705 7448 -25 1 856 288 154 0 0 chr12 35616593 35616645 -85640885 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1 856 440 240 29 9 chr12 35616899 35617004 -85640526 + MTD LTR MaLR 2 108 -311 1 856 310 289 0 57 chr12 35617053 35617141 -85640389 + B1_Mur1 SINE Alu 35 117 -32 1 856 357 308 85 8 chr12 35617143 35617261 -85640269 + B3A SINE B2 56 182 -16 1 856 1085 113 6 0 chr12 35617344 35617521 -85640009 + (GGA)n Simple_repeat Simple_repeat 2 179 0 1 856 749 230 90 0 chr12 35618969 35619147 -85638383 + B3 SINE B2 11 204 -12 1 856 6527 68 10 1 chr12 35619154 35619988 -85637542 + L1_Mus3 LINE L1 5798 6638 0 1 856 23 0 0 0 chr12 35620618 35620641 -85636889 + AT_rich Low_complexity Low_complexity 1 23 0 1 856 652 340 26 38 chr12 35621466 35621782 -85635748 + RMER1C Other Other 454 762 -580 1 856 3215 62 155 7 chr12 35621782 35622234 -85635296 + MURVY-LTR LTR ERV1 1 519 0 1 856 652 340 26 38 chr12 35622234 35622262 -85635268 + RMER1C Other Other 763 794 -548 1 856 368 248 53 90 chr12 35622277 35622521 -85635009 + MuRRS4-int LTR ERV1 45 279 -3419 1 856 5002 269 44 36 chr12 35622593 35624544 -85632986 + MuRRS4-int LTR ERV1 342 2453 -5103 1 856 4421 45 30 0 chr12 35625367 35625904 -85631626 - L1Md_F2 LINE L1 -10 6572 6020 1 856 809 312 28 25 chr12 35625904 35626229 -85631301 + MuRRS-int LTR ERV1 2260 2585 -2105 1 856 7255 277 15 27 chr12 35626233 35627164 -85630366 + MuRRS4-int LTR ERV1 2152 3080 -1983 1 856 215 31 0 30 chr12 35627164 35627197 -85630333 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 856 7255 277 15 27 chr12 35627197 35627535 -85629995 + MuRRS4-int LTR ERV1 3081 3428 -1635 1 856 1231 61 0 0 chr12 35627535 35627683 -85629847 + B1_Mus1 SINE Alu 1 148 0 1 856 7255 273 19 33 chr12 35627683 35628580 -85628950 + MuRRS4-int LTR ERV1 3429 4139 -924 1 856 306 82 5 19 chr12 35628802 35628859 -85628671 + RLTR6-int LTR ERV1 7737 7778 0 1 856 3283 69 148 4 chr12 35628859 35629313 -85628217 + MURVY-LTR LTR ERV1 1 519 0 1 856 334 300 0 0 chr12 35629313 35629393 -85628137 + RMER1C Other Other 500 579 -763 1 856 2738 281 64 42 chr12 35629374 35630355 -85627175 + RMER1C Other Other 165 1341 -1 1 856 999 75 75 0 chr12 35630528 35630662 -85626868 + B1_Mus1 SINE Alu 5 148 0 1 856 450 0 0 0 chr12 35631756 35631806 -85625724 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 856 1171 48 0 20 chr12 35631806 35631945 -85625585 - B1_Mus2 SINE Alu -8 139 1 1 856 3498 109 40 8 chr12 35631951 35632478 -85625052 - Lx2B LINE L1 -1 6999 6456 1 856 2685 127 48 2 chr12 35632478 35632913 -85624617 - Lx2B LINE L1 -725 6275 5821 1 856 2099 120 9 61 chr12 35633130 35633475 -85624055 - ORR1A2 LTR MaLR 0 327 1 2 856 1596 238 105 48 chr12 35635342 35635903 -85621627 + RMER19B LTR ERVK 309 901 -1 2 856 227 292 10 30 chr12 35636330 35636429 -85621101 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 856 365 302 17 0 chr12 35636480 35636599 -85620931 - BGLII_B LTR ERVK -27 414 294 2 856 414 272 0 0 chr12 35636689 35636781 -85620749 + RSINE1 SINE B4 1 92 -73 2 856 2900 232 68 53 chr12 35637554 35638722 -85618808 - RMER1B Other Other -13 1053 1 2 856 334 277 0 51 chr12 35638836 35638954 -85618576 + Charlie10 DNA MER1_type 2710 2821 -1 2 856 238 312 26 0 chr12 35639044 35639121 -85618409 + ID4_ SINE ID 2 80 -3 2 856 1191 112 0 0 chr12 35639121 35639300 -85618230 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 2 856 239 356 17 17 chr12 35639876 35639996 -85617534 + LTR16D LTR ERVL 528 647 -4 2 856 1162 288 81 31 chr12 35640483 35640982 -85616548 - Lx6 LINE L1 -55 7405 6506 2 856 7928 205 88 89 chr12 35641035 35642037 -85615493 - Lx4A LINE L1 -686 6372 5263 2 856 6398 60 5 29 chr12 35642037 35642879 -85614651 - L1_Mus2 LINE L1 0 6566 5745 2 856 7928 175 30 134 chr12 35642879 35644365 -85613165 - Lx4A LINE L1 -621 5262 3986 2 856 5270 87 31 8 chr12 35644359 35645198 -85612332 - MusHAL1 LINE L1 -1919 1898 1026 2 856 1174 74 0 0 chr12 35645198 35645346 -85612184 - B1_Mus1 SINE Alu 0 148 1 2 856 2500 156 33 80 chr12 35645346 35645827 -85611703 - MusHAL1 LINE L1 -5477 1042 578 2 856 9951 176 29 39 chr12 35645900 35647952 -85609578 - L1_Mur3 LINE L1 -640 5240 3208 2 856 2253 199 26 101 chr12 35647949 35648972 -85608558 - L1_Mur3 LINE L1 -4036 1844 904 2 856 187 31 30 30 chr12 35648972 35649005 -85608525 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2 856 21 0 0 0 chr12 35649529 35649550 -85607980 + AT_rich Low_complexity Low_complexity 1 21 0 2 856 1094 76 7 0 chr12 35649563 35649707 -85607823 + B1_Mus2 SINE Alu 3 147 0 2 856 198 0 0 0 chr12 35649707 35649729 -85607801 + (A)n Simple_repeat Simple_repeat 1 22 0 2 856 454 234 19 9 chr12 35649764 35649872 -85607658 + RSINE1 SINE B4 11 119 -46 2 856 565 83 21 10 chr12 35649877 35649974 -85607556 + (CATA)n Simple_repeat Simple_repeat 4 101 0 2 856 719 332 32 25 chr12 35650011 35650289 -85607241 + B4A SINE B4 9 288 -4 2 856 293 271 0 0 chr12 35650420 35650479 -85607051 + ID4_ SINE ID 13 71 -12 2 856 248 253 30 40 chr12 35650617 35650716 -85606814 + MLT1A1 LTR MaLR 307 404 -4 2 856 188 329 25 0 chr12 35651205 35651284 -85606246 - MIRb SINE MIR -79 189 109 2 856 204 275 109 72 chr12 35651362 35651473 -85606057 + MIR SINE MIR 9 122 -146 2 857 689 246 88 23 chr12 35652892 35653063 -85604467 + B3A SINE B2 1 182 -16 2 857 506 245 118 7 chr12 35653100 35653240 -85604290 + B3A SINE B2 3 158 -40 2 857 1556 201 43 0 chr12 35653240 35653564 -85603966 - RMER2 LTR ERV1 0 567 230 2 857 540 68 149 97 chr12 35653531 35653645 -85603885 - RMER2 LTR ERV1 -441 126 7 2 857 294 29 0 0 chr12 35653647 35653682 -85603848 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 857 233 151 0 19 chr12 35653700 35653754 -85603776 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 857 13545 53 2 1 chr12 35654224 35655964 -85601566 - L1Md_F2 LINE L1 -638 5944 4202 2 857 4947 55 2 13 chr12 35655964 35656589 -85600941 + L1Md_F2 LINE L1 5954 6571 -11 2 857 296 242 24 32 chr12 35656711 35656835 -85600695 + CT-rich Low_complexity Low_complexity 1 123 0 2 857 507 33 0 0 chr12 35656864 35656925 -85600605 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 857 23 0 0 0 chr12 35657289 35657312 -85600218 + AT_rich Low_complexity Low_complexity 1 23 0 2 857 326 218 0 65 chr12 35657356 35657449 -85600081 - RLTR17 LTR ERVK -126 566 480 2 857 872 104 0 22 chr12 35657458 35657595 -85599935 + B1_Mm SINE Alu 14 147 0 2 857 1252 230 34 61 chr12 35657646 35658025 -85599505 - RLTR17 LTR ERVK -230 462 94 2 857 570 281 0 28 chr12 35658908 35659051 -85598479 + RSINE1 SINE B4 3 141 -24 2 857 189 0 0 0 chr12 35659062 35659083 -85598447 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 857 2142 184 47 10 chr12 35660008 35660414 -85597116 + MTC LTR MaLR 1 421 0 2 857 355 281 179 7 chr12 35661431 35661571 -85595959 + RSINE1 SINE B4 2 165 0 2 857 314 256 104 43 chr12 35661754 35662106 -85595424 + L1MEc LINE L1 1382 1753 -4586 2 857 26 30 0 0 chr12 35662187 35662220 -85595310 + AT_rich Low_complexity Low_complexity 1 33 0 2 857 546 91 0 0 chr12 35662500 35662577 -85594953 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 857 281 176 0 0 chr12 35662701 35662752 -85594778 + B1F SINE Alu 16 66 -83 2 857 752 257 195 8 chr12 35662853 35663104 -85594426 - MTD LTR MaLR -14 405 108 2 857 287 336 19 75 chr12 35663177 35663338 -85594192 + MER5A DNA MER1_type 13 164 -25 2 857 530 240 8 8 chr12 35663761 35663883 -85593647 + MERVL_2A-int LTR ERVL 1485 1606 -4155 2 857 763 127 7 14 chr12 35663884 35664028 -85593502 - ORR1C2 LTR MaLR -241 143 1 2 857 300 200 0 0 chr12 35664078 35664138 -85593392 - B1_Mur1 SINE Alu 0 149 90 2 857 2657 87 49 16 chr12 35664138 35664525 -85593005 - MTB LTR MaLR 0 400 1 2 857 6413 108 3 82 chr12 35664542 35665720 -85591810 + MT-int LTR MaLR 3 1088 -10 2 857 246 59 0 0 chr12 35665705 35665739 -85591791 - MTD LTR MaLR -373 34 1 2 857 292 234 0 0 chr12 35665739 35665801 -85591729 - B1_Mur2 SINE Alu -55 94 33 2 857 180 0 0 0 chr12 35666347 35666367 -85591163 + (A)n Simple_repeat Simple_repeat 1 20 0 2 857 235 399 73 16 chr12 35667459 35667650 -85589880 + MIR3 SINE MIR 1 202 -6 2 857 2810 53 0 8 chr12 35668719 35669080 -85588450 - L1_Mus2 LINE L1 0 6566 6209 2 857 355 252 126 0 chr12 35669150 35669253 -85588277 + B1_Mus1 SINE Alu 33 148 0 2 857 201 26 51 26 chr12 35669353 35669392 -85588138 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 857 313 304 69 28 chr12 35671658 35671784 -85585746 + B1_Mur2 SINE Alu 23 139 -10 2 857 1093 111 12 8 chr12 35671784 35672039 -85585491 + (CATA)n Simple_repeat Simple_repeat 1 255 0 2 857 245 228 0 12 chr12 35672983 35673063 -85584467 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 857 1241 299 41 85 chr12 35673169 35673685 -85583845 + MLT1-int LTR MaLR 231 723 -648 2 857 288 198 107 0 chr12 35674702 35674776 -85582754 - MTEa LTR MaLR -14 365 291 2 857 201 241 0 18 chr12 35674868 35674923 -85582607 + GA-rich Low_complexity Low_complexity 2 55 0 2 857 2969 138 32 4 chr12 35674926 35675400 -85582130 + RLTR19 LTR ERVK 1 487 -12 2 857 183 100 0 0 chr12 35675636 35675666 -85581864 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 857 183 80 0 0 chr12 35675808 35675833 -85581697 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 857 344 351 27 5 chr12 35676170 35676356 -85581174 - MER117 DNA MER1_type -6 191 2 2 857 559 285 114 23 chr12 35677056 35677232 -85580298 + B3A SINE B2 1 192 -6 2 857 749 237 78 31 chr12 35677273 35677465 -85580065 + B3 SINE B2 5 205 -11 2 857 461 276 62 16 chr12 35677964 35678253 -85579277 - L1MA4A LINE L1 -354 5937 5634 2 857 207 204 0 0 chr12 35678719 35678763 -85578767 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 857 267 31 0 0 chr12 35679193 35679225 -85578305 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 857 576 311 165 68 chr12 35679229 35679495 -85578035 - B4 SINE B4 0 292 1 2 857 2726 136 124 127 chr12 35679969 35680656 -85576874 - RMER6C LTR ERVK -6 684 1 2 857 718 263 76 0 chr12 35680728 35680926 -85576604 - B3 SINE B2 -3 213 1 2 857 292 256 76 13 chr12 35681154 35681233 -85576297 - RMER15 LTR ERVL 0 575 492 2 857 213 97 0 0 chr12 35681237 35681268 -85576262 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2 857 387 192 0 0 chr12 35681268 35681346 -85576184 + CT-rich Low_complexity Low_complexity 4 81 0 2 857 719 170 17 11 chr12 35681333 35681361 -85576169 + polypyrimidine Low_complexity Low_complexity 153 180 0 2 857 1015 129 6 6 chr12 35681361 35681540 -85575990 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 857 719 170 17 11 chr12 35681540 35681689 -85575841 + CT-rich Low_complexity Low_complexity 2 152 0 2 857 739 164 1 0 chr12 35681696 35681823 -85575707 - B1_Mur2 SINE Alu -6 143 16 2 857 317 240 121 24 chr12 35681996 35682120 -85575410 - MER63B DNA AcHobo -3 433 298 2 857 410 284 31 0 chr12 35682867 35682994 -85574536 + B4 SINE B4 48 178 -114 2 857 21 0 0 0 chr12 35683094 35683115 -85574415 + AT_rich Low_complexity Low_complexity 1 21 0 2 857 198 0 0 0 chr12 35684651 35684673 -85572857 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2 857 586 286 165 37 chr12 35685010 35685228 -85572302 - 7SK RNA RNA -84 247 2 2 857 1059 154 16 11 chr12 35685397 35685587 -85571943 - B2_Mm2 SINE B2 -3 192 2 2 857 292 281 103 26 chr12 35685720 35685837 -85571693 + MER5B DNA MER1_type 33 158 -20 2 857 28 0 0 0 chr12 35686263 35686291 -85571239 + AT_rich Low_complexity Low_complexity 1 28 0 2 857 328 298 103 85 chr12 35686399 35686681 -85570849 + Charlie2b DNA MER1_type 53 339 -2443 2 857 351 121 0 0 chr12 35686693 35686751 -85570779 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 2 857 563 233 72 14 chr12 35687048 35687257 -85570273 + Charlie2b DNA MER1_type 2556 2776 -6 2 857 23 54 0 0 chr12 35687588 35687625 -85569905 + AT_rich Low_complexity Low_complexity 1 37 0 2 857 1693 172 69 14 chr12 35689299 35689647 -85567883 + ORR1B2 LTR MaLR 1 367 0 2 857 7168 175 47 12 chr12 35689647 35691105 -85566425 + ORR1B2-int LTR MaLR 1 1508 -1 2 857 2125 166 6 17 chr12 35691113 35691463 -85566067 + ORR1B2 LTR MaLR 12 357 -10 2 857 929 249 37 127 chr12 35691605 35691785 -85565745 - MTE2a LTR MaLR -26 353 189 2 857 378 0 0 0 chr12 35691785 35691827 -85565703 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2 857 929 249 37 127 chr12 35691827 35692023 -85565507 - MTE2a LTR MaLR -191 188 11 2 857 719 261 43 38 chr12 35692048 35692283 -85565247 - ORR1E LTR MaLR -120 239 4 2 857 25 65 0 0 chr12 35694840 35694886 -85562644 + AT_rich Low_complexity Low_complexity 1 46 0 2 857 487 206 196 0 chr12 35694907 35695014 -85562516 - B3 SINE B2 -87 129 2 3 857 195 337 30 89 chr12 35695075 35695176 -85562354 - L2a LINE L2 -26 3400 3306 3 857 749 188 13 19 chr12 35695327 35695484 -85562046 - Lx9 LINE L1 -414 7230 7075 3 857 800 309 7 44 chr12 35695501 35695911 -85561619 + Lx9 LINE L1 7247 7641 -3 3 857 487 270 0 45 chr12 35695940 35696072 -85561458 + B3A SINE B2 3 128 -70 3 857 567 0 0 0 chr12 35696082 35696145 -85561385 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 857 180 0 0 0 chr12 35696145 35696164 -85561366 + (GA)n Simple_repeat Simple_repeat 2 21 0 3 857 2754 311 100 23 chr12 35697077 35698545 -85558985 - Lx8 LINE L1 -215 7258 5678 3 857 1602 225 83 2 chr12 35698553 35699036 -85558494 + RMER4B LTR ERVK 17 574 -11 3 857 1016 264 158 38 chr12 35699071 35699520 -85558010 - Lx8 LINE L1 -247 5633 5131 3 857 851 197 71 22 chr12 35702203 35702385 -85555145 + RMER4B LTR ERVK 46 236 -349 3 857 1427 45 0 0 chr12 35702388 35702566 -85554964 - L1Md_F2 LINE L1 -193 5690 5513 3 857 7390 33 0 2 chr12 35702566 35703441 -85554089 + L1Md_F2 LINE L1 5710 6582 0 3 857 308 376 60 25 chr12 35703800 35703999 -85553531 - MIRb SINE MIR -27 241 36 3 857 191 36 0 35 chr12 35704072 35704101 -85553429 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 857 418 285 109 137 chr12 35704259 35704434 -85553096 + B4 SINE B4 113 282 -10 3 857 551 324 48 16 chr12 35705208 35705396 -85552134 + B3A SINE B2 3 196 -2 3 857 1164 102 26 36 chr12 35705494 35705688 -85551842 - B2_Mm2 SINE B2 -2 193 2 3 857 1357 235 61 14 chr12 35706662 35707024 -85550506 + MTEa LTR MaLR 1 379 0 3 857 304 22 22 22 chr12 35707558 35707604 -85549926 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 3 857 599 348 136 28 chr12 35708418 35709356 -85548174 - L1M5 LINE L1 -1044 5102 4073 3 857 234 119 39 107 chr12 35709388 35709566 -85547964 + (TACTG)n Simple_repeat Simple_repeat 3 168 0 3 857 274 244 0 25 chr12 35709569 35709687 -85547843 + (TCTG)n Simple_repeat Simple_repeat 4 118 0 3 857 270 212 24 0 chr12 35709752 35709837 -85547693 + (TCTG)n Simple_repeat Simple_repeat 4 90 0 3 857 240 257 18 71 chr12 35709839 35709952 -85547578 - RLTR40 LTR ERVK -145 672 566 3 857 22 56 0 0 chr12 35710473 35710509 -85547021 + AT_rich Low_complexity Low_complexity 1 36 0 3 857 482 312 0 23 chr12 35710511 35710642 -85546888 + B4 SINE B4 2 129 -163 3 857 428 231 19 28 chr12 35710681 35710788 -85546742 - B1_Mur1 SINE Alu -42 107 2 3 857 1433 263 8 21 chr12 35711105 35711486 -85546044 - Lx6 LINE L1 -43 7417 7042 3 857 318 305 35 78 chr12 35713322 35713464 -85544066 - Charlie4z DNA MER1_type -16 151 16 3 857 1943 116 9 53 chr12 35713712 35714049 -85543481 + RLTRETN_Mm LTR ERVK 1 322 0 3 857 583 282 124 16 chr12 35714581 35714903 -85542627 - MER63C DNA AcHobo -189 741 374 3 857 237 206 109 0 chr12 35714974 35715066 -85542464 - MER63C DNA AcHobo -738 192 91 3 857 270 324 68 54 chr12 35715086 35715233 -85542297 - B1_Mur1 SINE Alu 0 149 1 3 857 8412 8 0 0 chr12 35715589 35716569 -85540961 - L1Md_A LINE L1 0 6582 5603 3 857 3139 16 26 0 chr12 35716567 35716952 -85540578 + L1Md_A LINE L1 5260 5654 -229 3 857 1834 23 0 0 chr12 35717364 35717583 -85539947 + L1Md_T LINE L1 5368 5586 -297 3 857 8244 40 6 2 chr12 35717583 35718574 -85538956 + L1Md_T LINE L1 5587 6581 -1 3 857 359 176 0 124 chr12 35718806 35718903 -85538627 + MT2B LTR ERVL 173 257 -344 3 857 755 178 0 0 chr12 35718817 35718946 -85538584 + B1_Mur3 SINE Alu 19 147 -2 3 857 418 218 71 37 chr12 35719386 35719506 -85538024 - PB1D9 SINE Alu -63 248 9 3 857 251 244 23 93 chr12 35719433 35719519 -85538011 - MT2B LTR ERVL -362 239 160 3 857 1470 32 0 0 chr12 35719567 35719784 -85537746 + (TCTA)n Simple_repeat Simple_repeat 1 217 0 3 857 349 272 18 80 chr12 35719784 35719896 -85537634 - B1F SINE Alu -10 139 35 3 857 295 272 99 2 chr12 35719917 35720018 -85537512 - B1F SINE Alu -2 147 40 3 857 4055 114 20 28 chr12 35720039 35720681 -85536849 - Lx LINE L1 0 6654 6018 3 857 1320 235 58 11 chr12 35720798 35721160 -85536370 + MTE2b LTR MaLR 1 379 0 3 857 8638 117 57 2 chr12 35721473 35723163 -85534367 - Lx2B LINE L1 -5 6995 5219 3 857 311 0 26 0 chr12 35723214 35723253 -85534277 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 857 491 0 17 0 chr12 35723254 35723313 -85534217 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 857 428 308 182 6 chr12 35724737 35724907 -85532623 + MIR SINE MIR 57 256 -6 3 857 938 270 63 30 chr12 35725007 35725374 -85532156 + L1MC3 LINE L1 6031 6409 -1376 3 857 704 259 130 52 chr12 35725435 35725704 -85531826 - B4 SINE B4 -2 290 1 3 857 268 278 133 18 chr12 35725706 35725735 -85531795 + L1MC3 LINE L1 6401 6434 -1351 3 857 486 0 0 0 chr12 35725735 35725789 -85531741 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 857 268 278 133 18 chr12 35725789 35725924 -85531606 + L1MC3 LINE L1 6435 6583 -1202 3 857 312 262 112 0 chr12 35725926 35726006 -85531524 - PB1D10 SINE Alu -28 89 1 3 857 323 200 0 0 chr12 35726006 35726071 -85531459 + L1MC3 LINE L1 6559 6623 -1162 3 857 460 318 20 20 chr12 35726079 35726230 -85531300 + ORR1E LTR MaLR 1 151 -208 3 857 474 310 6 6 chr12 35726380 35726536 -85530994 + L1MC3 LINE L1 6646 6801 -984 3 857 207 0 0 0 chr12 35726624 35726647 -85530883 + (CAA)n Simple_repeat Simple_repeat 1 23 0 3 857 233 288 30 0 chr12 35727036 35727102 -85530428 + L1MC3 LINE L1 7051 7118 -667 3 857 245 284 114 141 chr12 35727360 35727626 -85529904 - B4 SINE B4 0 292 37 3 857 621 0 0 0 chr12 35727626 35727695 -85529835 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3 857 245 284 114 141 chr12 35727695 35727727 -85529803 - B4 SINE B4 -256 36 2 3 857 1159 68 0 0 chr12 35728145 35728291 -85529239 - B1_Mm SINE Alu 0 147 2 3 857 228 278 69 0 chr12 35729198 35729270 -85528260 + B1F1 SINE Alu 72 148 -1 3 857 238 312 26 13 chr12 35729284 35729362 -85528168 + ID4 SINE ID 5 83 0 3 857 235 288 107 99 chr12 35729524 35729655 -85527875 - L2b LINE L2 -4 3371 3240 3 857 525 313 5 68 chr12 35730128 35730320 -85527210 - ID_B1 SINE B4 -17 207 28 3 857 198 71 0 0 chr12 35731253 35731281 -85526249 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 857 25 65 0 0 chr12 35731750 35731796 -85525734 + GC_rich Low_complexity Low_complexity 1 46 0 3 857 477 223 114 0 chr12 35733789 35733921 -85523609 - MIR SINE MIR -127 149 3 3 857 286 284 34 84 chr12 35735384 35735503 -85522027 + PB1D7 SINE Alu 6 118 -2 3 857 255 331 92 26 chr12 35735748 35735900 -85521630 + MER103 DNA DNA 2 163 -3 3 857 763 163 49 7 chr12 35736321 35736463 -85521067 - B1_Mur2 SINE Alu -1 148 1 3 857 32 0 0 0 chr12 35736474 35736506 -85521024 + AT_rich Low_complexity Low_complexity 1 32 0 3 857 652 248 7 0 chr12 35736506 35736651 -85520879 - B1_Mur4 SINE Alu 0 150 5 3 857 322 241 18 18 chr12 35736693 35736803 -85520727 - L1MA7 LINE L1 -26 6265 6156 3 857 367 280 132 0 chr12 35737190 35737372 -85520158 - L1MA7 LINE L1 -239 6052 5847 3 857 555 235 223 24 chr12 35737390 35737726 -85519804 - L1MA7 LINE L1 -533 5767 5365 3 857 243 0 0 0 chr12 35737875 35737902 -85519628 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 857 538 299 63 19 chr12 35737903 35738108 -85519422 - B4A SINE B4 -22 270 57 3 857 212 192 36 55 chr12 35738176 35738231 -85519299 + RSINE1 SINE B4 77 130 -35 3 857 23 54 0 0 chr12 35738263 35738300 -85519230 + AT_rich Low_complexity Low_complexity 1 37 0 3 857 339 130 0 0 chr12 35738552 35738606 -85518924 + (GGA)n Simple_repeat Simple_repeat 2 55 0 3 857 215 304 246 0 chr12 35738640 35738709 -85518821 - ID_B1 SINE B4 -52 172 87 3 857 21 0 0 0 chr12 35739572 35739593 -85517937 + AT_rich Low_complexity Low_complexity 1 21 0 3 857 213 321 60 0 chr12 35739750 35739834 -85517696 + MIRb SINE MIR 105 193 -75 3 857 22 0 0 0 chr12 35739843 35739865 -85517665 + AT_rich Low_complexity Low_complexity 1 22 0 3 857 24 0 0 0 chr12 35741924 35741948 -85515582 + AT_rich Low_complexity Low_complexity 1 24 0 3 857 1573 172 105 15 chr12 35742060 35742403 -85515127 + ORR1D1 LTR MaLR 1 374 0 3 857 2765 227 31 37 chr12 35742438 35743059 -85514471 - Lx5 LINE L1 -129 6921 6305 3 857 5230 76 41 0 chr12 35743057 35743928 -85513602 + Lx3_Mus LINE L1 5124 6055 -954 3 857 328 185 61 79 chr12 35743921 35744085 -85513445 + Lx3B LINE L1 6788 6948 -25 3 857 210 71 0 0 chr12 35744086 35744114 -85513416 + (GGA)n Simple_repeat Simple_repeat 2 29 0 3 857 2062 96 32 6 chr12 35744297 35744610 -85512920 - L1_Mm LINE L1 -1153 4730 4410 3 857 3258 46 2 2 chr12 35745892 35746288 -85511242 + MTA_Mm LTR MaLR 1 396 0 3 857 473 240 62 8 chr12 35746889 35747019 -85510511 - RSINE1 SINE B4 -4 161 25 3 857 226 361 110 14 chr12 35747455 35747554 -85509976 + L4 LINE RTE 947 1055 -974 3 857 225 0 0 0 chr12 35747554 35747579 -85509951 + (TTA)n Simple_repeat Simple_repeat 2 26 0 3 857 226 361 110 14 chr12 35747579 35747625 -85509905 + L4 LINE RTE 1056 1105 -924 3 857 27 0 0 0 chr12 35747855 35747882 -85509648 + AT_rich Low_complexity Low_complexity 1 27 0 3 857 290 171 14 14 chr12 35748237 35748308 -85509222 - Lx9 LINE L1 -53 7591 7521 3 857 1850 173 140 0 chr12 35748774 35749139 -85508391 - MTC LTR MaLR 0 421 6 3 857 1551 204 40 22 chr12 35749353 35749724 -85507806 - ORR1C2 LTR MaLR 0 384 7 3 857 298 308 11 0 chr12 35750514 35750605 -85506925 + PB1 SINE Alu 34 125 -2 3 857 1198 239 54 21 chr12 35751199 35751532 -85505998 - Lx8 LINE L1 -383 7090 6747 3 857 306 0 0 0 chr12 35751537 35751571 -85505959 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 857 267 31 0 0 chr12 35751806 35751838 -85505692 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 857 610 178 139 0 chr12 35752279 35752408 -85505122 - B1_Mur3 SINE Alu 0 149 3 3 857 361 248 160 110 chr12 35752837 35753357 -85504173 - L1MC5 LINE L1 -240 7721 7176 3 857 228 184 0 0 chr12 35754449 35754498 -85503032 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 857 761 157 226 28 chr12 35754544 35754721 -85502809 + B3 SINE B2 1 212 -4 3 857 708 226 40 97 chr12 35754750 35754926 -85502604 - B3 SINE B2 -18 177 12 4 857 41 0 0 0 chr12 35754978 35755019 -85502511 + AT_rich Low_complexity Low_complexity 1 41 0 4 857 811 235 59 15 chr12 35756713 35756916 -85500614 + B3 SINE B2 1 212 -4 4 857 8469 110 24 29 chr12 35757400 35758731 -85498799 - Lx3B LINE L1 0 6973 5650 4 857 773 160 26 65 chr12 35758733 35758887 -85498643 + B1_Mus1 SINE Alu 1 148 0 4 857 913 299 98 27 chr12 35759028 35759468 -85498062 - Lx8 LINE L1 -146 7327 6857 4 857 249 108 0 0 chr12 35759548 35759585 -85497945 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 4 857 713 254 44 24 chr12 35759585 35759791 -85497739 - ID_B1 SINE B4 -11 213 4 4 857 22 35 0 0 chr12 35760523 35760552 -85496978 + AT_rich Low_complexity Low_complexity 1 29 0 4 857 378 74 0 0 chr12 35760858 35760912 -85496618 + (CAAAC)n Simple_repeat Simple_repeat 5 58 0 4 857 21 89 0 0 chr12 35761237 35761293 -85496237 + AT_rich Low_complexity Low_complexity 1 56 0 4 857 273 271 209 0 chr12 35761293 35761422 -85496108 - RSINE1 SINE B4 -8 157 2 4 857 405 187 19 9 chr12 35762333 35762389 -85495141 + polypyrimidine Low_complexity Low_complexity 55 111 0 4 857 1179 117 0 0 chr12 35762389 35762569 -85494961 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 857 405 187 19 9 chr12 35762569 35762620 -85494910 + polypyrimidine Low_complexity Low_complexity 4 54 0 4 857 555 16 0 0 chr12 35762620 35762684 -85494846 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 857 22 0 0 0 chr12 35763895 35763917 -85493613 + AT_rich Low_complexity Low_complexity 1 22 0 4 857 533 76 13 0 chr12 35765029 35765108 -85492422 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 857 307 301 157 8 chr12 35765113 35765247 -85492283 - HAL1-3A_ME LINE L1 -421 2437 2284 4 857 274 110 53 27 chr12 35765252 35765327 -85492203 + CT-rich Low_complexity Low_complexity 1 77 0 4 857 584 192 104 0 chr12 35765327 35765452 -85492078 - B1_Mur4 SINE Alu -8 142 5 4 857 25 0 0 0 chr12 35766005 35766030 -85491500 + AT_rich Low_complexity Low_complexity 1 25 0 4 857 922 144 9 17 chr12 35766071 35766253 -85491277 + B1_Mm SINE Alu 1 146 -1 4 857 234 0 0 0 chr12 35766260 35766286 -85491244 + (A)n Simple_repeat Simple_repeat 1 26 0 4 857 622 151 159 45 chr12 35766556 35766688 -85490842 - B1_Mur3 SINE Alu -2 147 1 4 857 256 187 0 51 chr12 35767093 35767172 -85490358 - Lx9 LINE L1 -1410 6234 6160 4 857 238 314 122 19 chr12 35767186 35767293 -85490237 - PB1D9 SINE Alu 0 120 3 4 857 349 321 86 16 chr12 35768452 35768828 -85488702 - L1MB1 LINE L1 -287 6025 5621 4 857 741 199 15 17 chr12 35769430 35769580 -85487950 + B1_Mur1 SINE Alu 9 149 0 4 857 1040 80 0 20 chr12 35769661 35769814 -85487716 - L1_Mus1 LINE L1 0 6567 6418 4 857 645 91 0 0 chr12 35769814 35769902 -85487628 + L1_Mur2 LINE L1 3736 3823 -2054 4 857 378 0 0 0 chr12 35769939 35769981 -85487549 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 857 28 0 0 0 chr12 35770477 35770505 -85487025 + AT_rich Low_complexity Low_complexity 1 28 0 4 857 1238 41 0 0 chr12 35771922 35772069 -85485461 - B1_Mus2 SINE Alu 0 147 1 4 857 481 300 89 12 chr12 35772070 35772316 -85485214 - L1MB1 LINE L1 -624 5556 5292 4 857 224 209 45 23 chr12 35772331 35772375 -85485155 + ID_B1 SINE B4 86 130 -94 4 857 3330 52 14 0 chr12 35772806 35773232 -85484298 - L1_Mus1 LINE L1 -487 6080 5649 4 857 3854 60 0 0 chr12 35773232 35773713 -85483817 + L1_Mus1 LINE L1 6083 6563 -4 4 857 214 344 41 10 chr12 35774340 35774437 -85483093 - B1F2 SINE Alu -7 142 43 4 857 198 136 0 0 chr12 35774478 35774522 -85483008 + (T)n Simple_repeat Simple_repeat 1 44 0 4 857 394 235 25 0 chr12 35777892 35777973 -85479557 + 5S rRNA rRNA 9 91 -30 4 857 2143 245 31 10 chr12 35778258 35778770 -85478760 - Lx7 LINE L1 -346 7350 6828 4 857 3599 56 2 0 chr12 35778844 35779292 -85478238 + L1_Mus2 LINE L1 6118 6566 0 4 857 255 222 0 0 chr12 35779295 35779349 -85478181 - MER31B LTR ERV1 -148 337 284 4 857 1524 162 11 33 chr12 35779349 35779623 -85477907 - L1_Mur3 LINE L1 -140 5740 5473 4 857 476 239 133 19 chr12 35779623 35779781 -85477749 - MTD LTR MaLR -194 225 50 4 857 639 272 114 16 chr12 35779815 35780067 -85477463 - MER31B LTR ERV1 -204 281 1 4 857 254 241 128 35 chr12 35780885 35780971 -85476559 + RSINE1 SINE B4 30 123 -42 4 857 588 271 0 34 chr12 35781378 35781527 -85476003 + ID_B1 SINE B4 81 224 0 4 857 561 30 0 0 chr12 35781750 35781817 -85475713 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 858 315 321 113 84 chr12 35783308 35783916 -85473614 - L1MEf LINE L1 -4167 2033 1408 4 858 231 163 23 0 chr12 35783935 35783978 -85473552 - L1MEf LINE L1 -4767 1433 1390 4 858 186 43 0 0 chr12 35784346 35784369 -85473161 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 858 249 192 256 0 chr12 35784381 35784459 -85473071 - RMER15 LTR ERVL 0 575 478 4 858 611 218 207 26 chr12 35784539 35784732 -85472798 + RMER15 LTR ERVL 336 563 -12 4 858 198 373 133 0 chr12 35784857 35785007 -85472523 + L2 LINE L2 2862 3031 -388 4 858 556 235 154 56 chr12 35785948 35786214 -85471316 - B4A SINE B4 0 292 1 4 858 790 284 147 4 chr12 35786768 35787033 -85470497 - MTD LTR MaLR 0 419 117 4 858 360 315 69 0 chr12 35787040 35787170 -85470360 + MIRb SINE MIR 112 250 -18 4 858 21 0 0 0 chr12 35787506 35787527 -85470003 + AT_rich Low_complexity Low_complexity 1 21 0 4 858 452 326 24 47 chr12 35788008 35788349 -85469181 - L1MB2 LINE L1 -293 5878 5546 4 858 493 226 37 9 chr12 35788676 35788783 -85468747 + ID_B1 SINE B4 111 220 -4 4 858 21 57 0 0 chr12 35788878 35788913 -85468617 + AT_rich Low_complexity Low_complexity 1 35 0 4 858 1542 166 103 12 chr12 35789367 35789708 -85467822 - Lx9 LINE L1 -6 7638 7267 4 858 677 273 56 0 chr12 35790780 35790978 -85466552 + B3 SINE B2 2 210 -6 4 858 1201 48 0 0 chr12 35791122 35791267 -85466263 + B1_Mus2 SINE Alu 1 145 -2 4 858 210 128 0 0 chr12 35791269 35791308 -85466222 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 4 858 480 153 0 0 chr12 35791722 35791807 -85465723 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 858 315 0 0 0 chr12 35793687 35793722 -85463808 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 858 240 288 30 0 chr12 35793723 35793789 -85463741 - RSINE1 SINE B4 -22 143 76 4 858 180 0 0 0 chr12 35794572 35794592 -85462938 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 858 565 256 8 0 chr12 35795577 35795702 -85461828 + B1_Mur1 SINE Alu 24 149 0 4 858 28 79 0 0 chr12 35795706 35795769 -85461761 + AT_rich Low_complexity Low_complexity 1 63 0 4 858 1307 184 123 31 chr12 35795817 35796166 -85461364 - ORR1C2 LTR MaLR -3 381 1 4 858 242 352 0 42 chr12 35796400 35796495 -85461035 - RMER12 LTR ERVK -489 833 743 4 858 207 0 0 0 chr12 35797457 35797480 -85460050 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 858 336 175 0 0 chr12 35797623 35797686 -85459844 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 4 858 7435 64 42 1 chr12 35798042 35799704 -85457826 - L1_Mus1 LINE L1 -1 6566 4836 4 858 3021 110 15 75 chr12 35799704 35800224 -85457306 + L1_Mus1 LINE L1 4342 4830 -1053 4 858 219 288 0 141 chr12 35800732 35800817 -85456713 + MIRb SINE MIR 113 185 -83 4 858 2025 77 21 17 chr12 35801082 35801371 -85456159 + L1_Mus1 LINE L1 6278 6567 0 4 858 601 249 76 84 chr12 35802720 35802957 -85454573 - MER2 DNA MER2_type -74 271 37 4 858 448 336 13 26 chr12 35803376 35803529 -85454001 + B4A SINE B4 57 207 -85 4 858 621 189 152 53 chr12 35803651 35803802 -85453728 + URR1A DNA MER1_type 1 166 -60 4 858 24 0 0 0 chr12 35803882 35803906 -85453624 + AT_rich Low_complexity Low_complexity 1 24 0 4 858 242 337 22 0 chr12 35805494 35805583 -85451947 - L2a LINE L2 -2 3424 3334 4 858 1414 75 0 36 chr12 35805737 35805932 -85451598 - B2_Mm2 SINE B2 -7 188 1 4 858 337 326 109 27 chr12 35806092 35806275 -85451255 - MLT1B LTR MaLR -186 204 7 4 858 21 0 0 0 chr12 35807101 35807122 -85450408 + AT_rich Low_complexity Low_complexity 1 21 0 4 858 2180 181 29 72 chr12 35809356 35809909 -85447621 - RLTR24 LTR ERV1 0 529 1 4 858 3961 49 0 14 chr12 35810225 35810726 -85446804 + L1_Mus1 LINE L1 6074 6567 0 4 858 5375 36 0 0 chr12 35810833 35811494 -85446036 - L1Md_F2 LINE L1 -1996 3887 3227 4 858 16930 31 6 3 chr12 35811494 35814221 -85443309 + L1Md_F2 LINE L1 3866 6582 0 4 858 246 91 18 35 chr12 35814426 35814483 -85443047 + (CAAAAA)n Simple_repeat Simple_repeat 4 59 0 4 858 261 314 0 0 chr12 35814655 35814725 -85442805 + (TATATG)n Simple_repeat Simple_repeat 1 70 0 4 858 181 329 105 0 chr12 35814934 35815010 -85442520 + L4 LINE RTE 893 976 -1053 4 858 235 341 112 32 chr12 35815154 35815342 -85442188 - Kanga11a DNA Tc2 -685 285 83 4 858 824 178 7 7 chr12 35815560 35815707 -85441823 + B1_Mus2 SINE Alu 1 147 0 4 858 507 178 105 6 chr12 35815784 35815964 -85441566 - ORR1D1 LTR MaLR 0 374 130 4 858 1067 187 100 50 chr12 35816084 35816365 -85441165 - ORR1D1-int LTR MaLR -143 1227 933 4 858 22 56 0 0 chr12 35819316 35819352 -85438178 + AT_rich Low_complexity Low_complexity 1 36 0 4 858 7178 67 66 8 chr12 35819499 35820690 -85436840 - L1_Mus3 LINE L1 -5 6633 5374 4 858 21 71 0 0 chr12 35820889 35820931 -85436599 + AT_rich Low_complexity Low_complexity 1 42 0 4 858 5207 105 28 0 chr12 35820953 35821717 -85435813 - Lx3A LINE L1 -7 6974 6190 4 858 360 165 24 0 chr12 35821776 35821861 -85435669 - Lx7 LINE L1 -281 7415 7329 4 858 619 213 102 0 chr12 35822215 35822342 -85435188 - B1_Mur4 SINE Alu -9 141 2 4 858 336 317 137 8 chr12 35823287 35823411 -85434119 + RSINE1 SINE B4 3 142 -23 4 858 191 287 86 65 chr12 35824013 35824106 -85433424 - MER5B DNA MER1_type -4 174 80 5 858 471 155 0 0 chr12 35825147 35825231 -85432299 + CT-rich Low_complexity Low_complexity 3 86 0 5 858 463 274 16 16 chr12 35825276 35825402 -85432128 + ID_B1 SINE B4 1 126 -98 5 858 499 270 42 6 chr12 35825855 35825996 -85431534 - B1F SINE Alu -7 142 1 5 858 27 29 0 0 chr12 35826560 35826594 -85430936 + AT_rich Low_complexity Low_complexity 1 34 0 5 858 1327 117 172 35 chr12 35826601 35826727 -85430803 - Lx2 LINE L1 -541 6456 6339 5 858 1970 31 27 8 chr12 35826727 35826985 -85430545 - L1Md_F3 LINE L1 0 6584 6322 5 858 1327 117 172 35 chr12 35826985 35827114 -85430416 - Lx2 LINE L1 -659 6338 6166 5 858 3254 128 33 11 chr12 35827115 35827666 -85429864 + Lx2 LINE L1 6430 6992 -5 5 858 270 0 0 0 chr12 35834391 35834421 -85423109 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 858 381 93 0 0 chr12 35835726 35835780 -85421750 + (CATA)n Simple_repeat Simple_repeat 3 56 0 5 858 3204 243 69 32 chr12 35835936 35836849 -85420681 - Lx8 LINE L1 -248 7225 6279 5 858 278 245 135 21 chr12 35836849 35836945 -85420585 + MER20 DNA MER1_type 26 132 -87 5 858 306 250 48 62 chr12 35837112 35837202 -85420328 - L1MC LINE L1 -2154 5841 5748 5 858 2357 77 114 6 chr12 35837202 35837554 -85419976 + RLTR10 LTR ERVK 1 390 0 5 858 306 269 31 63 chr12 35837554 35837608 -85419922 - L1MC LINE L1 -597 5747 5699 5 858 408 219 0 20 chr12 35837668 35837766 -85419764 + Lx2B LINE L1 6888 6983 -17 5 858 229 290 111 16 chr12 35838618 35838744 -85418786 - L1M5 LINE L1 -462 5702 5565 5 858 23 54 0 0 chr12 35838744 35838781 -85418749 + AT_rich Low_complexity Low_complexity 1 37 0 5 858 419 259 114 0 chr12 35839918 35840049 -85417481 - B1_Mm SINE Alu -1 146 1 5 858 252 0 0 0 chr12 35842232 35842260 -85415270 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 858 333 325 113 12 chr12 35842963 35843131 -85414399 - Tigger5 DNA MER2_type -2177 229 45 5 858 4105 65 4 8 chr12 35843348 35843877 -85413653 - L1Md_F2 LINE L1 0 6582 6056 5 858 181 309 18 18 chr12 35844659 35844715 -85412815 + MIR SINE MIR 15 70 -192 5 858 617 299 159 35 chr12 35844742 35845113 -85412417 - RMER5 LTR ERV1 0 534 118 5 858 237 272 62 0 chr12 35845412 35845493 -85412037 + Lx8 LINE L1 7039 7124 -349 5 858 474 308 0 15 chr12 35846517 35846652 -85410878 - RSINE1 SINE B4 -29 136 4 5 858 315 296 73 9 chr12 35847420 35847529 -85410001 - PB1D10 SINE Alu -1 116 1 5 858 960 33 0 0 chr12 35848411 35848533 -85408997 + B1_Mm SINE Alu 1 122 -25 5 858 276 125 47 0 chr12 35850229 35850293 -85407237 + (CATA)n Simple_repeat Simple_repeat 4 70 0 5 858 222 37 0 0 chr12 35850940 35850967 -85406563 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 5 858 22 35 0 0 chr12 35851413 35851442 -85406088 + AT_rich Low_complexity Low_complexity 1 29 0 5 858 227 236 40 27 chr12 35851923 35851997 -85405533 - ID SINE ID -148 76 2 5 858 220 337 48 29 chr12 35851997 35852066 -85405464 - PB1D10 SINE Alu -2 115 43 5 858 1547 196 216 6 chr12 35852066 35852414 -85405116 + MTC LTR MaLR 1 421 0 5 858 220 337 48 29 chr12 35852414 35852448 -85405082 - PB1D10 SINE Alu -75 42 10 5 858 272 191 29 0 chr12 35855883 35855951 -85401579 + CT-rich Low_complexity Low_complexity 1 70 0 5 858 309 51 0 0 chr12 35857142 35857181 -85400349 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 5 858 307 258 54 0 chr12 35857351 35857444 -85400086 - B1F1 SINE Alu -51 98 1 5 858 386 204 34 42 chr12 35857710 35857828 -85399702 - B2_Mm2 SINE B2 0 195 79 5 858 198 0 0 0 chr12 35857842 35857864 -85399666 + (T)n Simple_repeat Simple_repeat 1 22 0 5 858 1191 68 0 0 chr12 35857864 35858011 -85399519 - B1_Mus2 SINE Alu 0 147 1 5 858 238 308 164 19 chr12 35858372 35858531 -85398999 - L1MC4 LINE L1 -1069 6973 6792 5 858 25 0 0 0 chr12 35859206 35859231 -85398299 + AT_rich Low_complexity Low_complexity 1 25 0 5 858 516 281 138 16 chr12 35859506 35859694 -85397836 - B3 SINE B2 -5 211 1 5 858 183 80 0 0 chr12 35859955 35859980 -85397550 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 858 751 162 6 11 chr12 35860016 35860197 -85397333 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 858 459 0 0 0 chr12 35861325 35861376 -85396154 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 858 217 322 0 0 chr12 35863266 35863325 -85394205 - ID4 SINE ID -2 81 23 5 858 450 0 0 0 chr12 35864196 35864246 -85393284 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 858 289 257 216 27 chr12 35864608 35864771 -85392759 - L1M4 LINE L1 -603 5581 5384 5 858 603 286 119 41 chr12 35864842 35865305 -85392225 - L1M4 LINE L1 -867 5279 4781 5 858 353 316 46 31 chr12 35865784 35865980 -85391550 + B4A SINE B4 17 215 -77 5 858 371 273 101 91 chr12 35866127 35866146 -85391384 - B4A SINE B4 -1 291 273 5 858 482 83 14 0 chr12 35866146 35866218 -85391312 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 858 371 273 101 91 chr12 35866218 35866387 -85391143 - B4A SINE B4 -20 272 92 5 858 222 37 0 0 chr12 35866387 35866414 -85391116 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 858 371 273 101 91 chr12 35866414 35866510 -85391020 - B4A SINE B4 -201 91 4 5 858 782 244 27 9 chr12 35866513 35866736 -85390794 - B4A SINE B4 -64 228 2 5 858 923 111 247 6 chr12 35867902 35868084 -85389446 - URR1A DNA MER1_type 0 226 1 5 858 293 222 48 57 chr12 35868343 35868448 -85389082 - RSINE1 SINE B4 -48 117 14 5 858 241 297 51 59 chr12 35868479 35868597 -85388933 + PB1D10 SINE Alu 1 117 0 5 858 520 269 72 29 chr12 35869898 35870036 -85387494 - RSINE1 SINE B4 -18 147 4 5 858 673 301 132 60 chr12 35870037 35870868 -85386662 - L1MA9 LINE L1 -43 6269 5379 5 858 422 191 60 17 chr12 35871878 35871995 -85385535 + L1M3 LINE L1 5175 5296 -844 5 858 182 37 0 36 chr12 35872088 35872116 -85385414 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 5 858 654 13 0 0 chr12 35872198 35872273 -85385257 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 5 858 968 204 146 16 chr12 35872273 35872648 -85384882 + MT2B LTR ERVL 39 525 -76 5 858 311 44 22 0 chr12 35872648 35872693 -85384837 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 858 231 91 0 0 chr12 35872693 35872726 -85384804 + MT2_Mm LTR ERVL 461 493 0 5 858 333 287 0 11 chr12 35872892 35872987 -85384543 + BC1_Mm scRNA scRNA 6 99 -53 5 858 342 0 0 0 chr12 35873257 35873295 -85384235 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 858 360 0 0 0 chr12 35873515 35873555 -85383975 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 858 863 256 15 0 chr12 35875502 35875705 -85381825 + B3 SINE B2 7 212 -4 5 858 483 297 63 98 chr12 35875773 35875978 -85381552 + B3A SINE B2 1 198 0 5 858 3845 57 0 4 chr12 35876027 35876501 -85381029 - L1_Mus1 LINE L1 -1 6566 6095 5 858 452 284 15 22 chr12 35876585 35876722 -85380808 - ORR1E LTR MaLR -220 139 4 5 858 1192 119 51 28 chr12 35877130 35877346 -85380184 - Lx LINE L1 -48 6606 6386 5 858 730 237 10 15 chr12 35878395 35878596 -85378934 + MTD LTR MaLR 5 204 -215 5 858 2966 63 24 0 chr12 35878601 35878984 -85378546 + L1_Mus1 LINE L1 6169 6560 -7 5 858 242 56 28 0 chr12 35878993 35879029 -85378501 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 5 858 523 245 84 0 chr12 35879071 35879214 -85378316 + MTD LTR MaLR 196 350 -71 5 858 735 214 15 0 chr12 35879229 35879360 -85378170 + ETnERV2-int LTR ERVK 7070 7202 -204 5 858 201 191 24 0 chr12 35879751 35879793 -85377737 + (CAAA)n Simple_repeat Simple_repeat 4 46 0 5 858 258 196 18 0 chr12 35879800 35879856 -85377674 + MTD LTR MaLR 349 405 -14 5 858 2662 44 38 0 chr12 35879963 35880283 -85377247 - IAPEY3_LTR LTR ERVK 0 332 1 5 858 1778 166 34 73 chr12 35880361 35880745 -85376785 - ORR1C1 LTR MaLR -5 373 5 5 858 241 229 0 0 chr12 35880874 35880922 -85376608 - MER5B DNA MER1_type -17 161 114 5 858 2489 87 25 22 chr12 35881450 35881816 -85375714 + Lx3A LINE L1 6610 6976 -5 5 858 429 20 0 0 chr12 35881854 35881904 -85375626 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 858 279 0 0 0 chr12 35882007 35882038 -85375492 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 858 2258 124 24 5 chr12 35882573 35882953 -85374577 + ORR1B1 LTR MaLR 1 387 -7 5 858 1096 88 7 0 chr12 35883013 35883160 -85374370 + B1_Mus1 SINE Alu 1 148 0 5 858 300 27 0 0 chr12 35883210 35883247 -85374283 + (CAA)n Simple_repeat Simple_repeat 3 39 0 5 858 413 48 0 46 chr12 35883247 35883312 -85374218 + (CAAAC)n Simple_repeat Simple_repeat 1 62 0 5 858 436 214 17 43 chr12 35883634 35883743 -85373787 + PB1D10 SINE Alu 1 107 -10 5 858 399 21 0 0 chr12 35883743 35883791 -85373739 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 5 858 334 298 0 0 chr12 35885074 35885158 -85372372 - LTR16B LTR ERVL -2 461 378 5 858 22 0 0 0 chr12 35885442 35885464 -85372066 + AT_rich Low_complexity Low_complexity 1 22 0 5 858 191 349 59 52 chr12 35886411 35886547 -85370983 - MIR SINE MIR -94 168 32 5 858 531 343 5 19 chr12 35886597 35886802 -85370728 + MER82 DNA MER2_type 449 650 -3 5 858 276 100 0 0 chr12 35887536 35887576 -85369954 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5 858 496 359 65 23 chr12 35887634 35887896 -85369634 - B4A SINE B4 0 292 20 5 858 237 348 0 108 chr12 35888644 35888773 -85368757 + RMER10B LTR ERVL 41 155 -243 5 858 1881 200 58 3 chr12 35888979 35889355 -85368175 - MTD LTR MaLR -5 414 18 5 858 2823 207 35 119 chr12 35889506 35890025 -85367505 + Lx7 LINE L1 6893 7389 -307 5 858 3158 90 2 10 chr12 35890025 35890428 -85367102 - MTB LTR MaLR 0 400 1 5 858 2823 207 35 119 chr12 35890428 35890785 -85366745 + Lx7 LINE L1 7390 7696 0 5 858 204 97 0 0 chr12 35890951 35890982 -85366548 + (A)n Simple_repeat Simple_repeat 1 31 0 5 858 4797 55 26 8 chr12 35891386 35891973 -85365557 + L1_Mus1 LINE L1 5970 6566 -1 5 858 220 308 0 0 chr12 35892898 35892963 -85364567 + CT-rich Low_complexity Low_complexity 2 66 0 5 858 392 332 59 25 chr12 35893797 35894001 -85363529 - MIR SINE MIR -19 243 33 6 858 414 0 0 0 chr12 35894452 35894498 -85363032 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 858 189 0 0 0 chr12 35894663 35894684 -85362846 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 858 728 191 62 21 chr12 35894718 35894850 -85362680 + B1_Mur4 SINE Alu 1 141 -9 6 858 194 0 0 37 chr12 35894850 35894877 -85362653 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 858 728 191 62 21 chr12 35894877 35894888 -85362642 + B1_Mur4 SINE Alu 142 150 0 6 858 1872 58 12 4 chr12 35895277 35895518 -85362012 + L1_Mus3 LINE L1 6396 6638 0 6 858 811 199 170 6 chr12 35895718 35895900 -85361630 - B3 SINE B2 0 216 5 6 858 348 319 8 25 chr12 35896090 35896209 -85361321 - PB1D10 SINE Alu 0 117 1 6 858 207 0 0 0 chr12 35896397 35896420 -85361110 + (T)n Simple_repeat Simple_repeat 1 23 0 6 858 7067 61 0 0 chr12 35896442 35897274 -85360256 - L1Md_T LINE L1 0 6582 5751 6 858 376 289 127 7 chr12 35897853 35898003 -85359527 - L1M3 LINE L1 -421 5768 5601 6 858 353 301 97 101 chr12 35898004 35898292 -85359238 + B4A SINE B4 3 289 -3 6 858 284 257 14 0 chr12 35898304 35898374 -85359156 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 858 602 94 17 17 chr12 35898386 35898505 -85359025 + (CA)n Simple_repeat Simple_repeat 2 120 0 6 858 396 297 157 112 chr12 35898514 35898980 -85358550 - L1MEf LINE L1 -4775 1425 939 6 858 216 231 0 0 chr12 35902647 35902725 -85354805 + (TCCA)n Simple_repeat Simple_repeat 2 79 0 6 858 240 253 90 39 chr12 35902895 35902973 -85354557 - MER5B DNA MER1_type -11 167 86 6 858 4226 70 21 11 chr12 35905677 35906211 -85351319 - L1Md_F2 LINE L1 0 6582 6044 6 858 2463 42 0 0 chr12 35906211 35906500 -85351030 + L1Md_F2 LINE L1 5769 6057 -525 6 858 299 167 0 15 chr12 35906698 35906765 -85350765 + GA-rich Low_complexity Low_complexity 2 67 0 6 858 211 239 0 0 chr12 35906950 35906996 -85350534 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 6 858 198 0 0 0 chr12 35907016 35907038 -85350492 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 858 716 292 21 146 chr12 35907071 35907400 -85350130 - B4A SINE B4 -3 289 2 6 858 24 53 0 0 chr12 35909034 35909072 -85348458 + AT_rich Low_complexity Low_complexity 1 38 0 6 858 234 62 0 0 chr12 35909140 35909172 -85348358 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 858 468 0 0 0 chr12 35910043 35910095 -85347435 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 858 603 0 0 0 chr12 35910095 35910161 -85347369 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 858 225 239 0 0 chr12 35910247 35910293 -85347237 + L1MA7 LINE L1 6138 6183 -108 6 858 427 226 62 31 chr12 35910288 35910416 -85347114 - L1MA9 LINE L1 -20 6292 6161 6 858 1640 295 96 36 chr12 35910411 35910885 -85346645 - Lx8 LINE L1 0 7473 6964 6 858 471 18 0 0 chr12 35910885 35910941 -85346589 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 858 1640 295 96 36 chr12 35910941 35911194 -85346336 - Lx8 LINE L1 -510 6963 6703 6 858 626 321 12 35 chr12 35911275 35911446 -85346084 + B4 SINE B4 1 167 -125 6 858 849 20 0 0 chr12 35911451 35911550 -85345980 + (GA)n Simple_repeat Simple_repeat 2 100 0 6 858 800 255 117 3 chr12 35911889 35912172 -85345358 - L1M3 LINE L1 -905 5235 4921 6 858 229 338 3 19 chr12 35913105 35913230 -85344300 + L2a LINE L2 3294 3414 -12 6 859 1589 218 96 8 chr12 35914598 35914698 -85342832 - MTD LTR MaLR -29 390 285 6 859 2020 172 11 35 chr12 35914698 35915066 -85342464 - RLTR15 LTR ERVK 0 359 1 6 859 1589 218 96 8 chr12 35915066 35915321 -85342209 - MTD LTR MaLR -135 284 5 6 859 342 277 13 102 chr12 35919732 35919889 -85337641 - MER63A DNA AcHobo -42 168 26 6 859 284 274 42 119 chr12 35920068 35920248 -85337282 - L1MA9 LINE L1 -4 6308 6151 6 859 333 0 0 0 chr12 35920248 35920285 -85337245 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 859 284 274 42 119 chr12 35920285 35920365 -85337165 - L1MA9 LINE L1 -162 6150 6068 6 859 489 282 17 3 chr12 35921391 35921513 -85336017 + B3A SINE B2 60 185 -31 6 859 576 62 0 0 chr12 35921518 35921599 -85335931 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 859 934 278 136 62 chr12 35921602 35922129 -85335401 - L1M3 LINE L1 -2585 3555 2961 6 859 612 319 58 5 chr12 35922129 35922334 -85335196 + B3 SINE B2 1 216 0 6 859 934 278 136 62 chr12 35922334 35922504 -85335026 - L1M3 LINE L1 -3180 2960 2806 6 859 332 361 38 16 chr12 35922718 35922901 -85334629 + L1M3e LINE L1 136 322 -6708 6 859 259 220 111 68 chr12 35922919 35923036 -85334494 + B3A SINE B2 5 126 -72 6 859 253 326 15 52 chr12 35923036 35923172 -85334358 + L1M3e LINE L1 1571 1701 -5329 6 859 3945 119 58 23 chr12 35923353 35923956 -85333574 - Lx2 LINE L1 -1 6996 6373 6 859 289 151 0 0 chr12 35923956 35924009 -85333521 - L1_Mur1 LINE L1 -830 5056 5004 6 859 3863 108 0 6 chr12 35924001 35924551 -85332979 + Lx2 LINE L1 5750 6296 -701 6 859 513 263 26 87 chr12 35924522 35924751 -85332779 + L1M3e LINE L1 1832 2046 -4984 6 859 2097 209 54 5 chr12 35924783 35925230 -85332300 + Lx9 LINE L1 7009 7477 -167 6 859 198 0 0 0 chr12 35925289 35925311 -85332219 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 859 268 288 16 31 chr12 35925316 35925445 -85332085 + Charlie1a DNA MER1_type 1311 1437 -18 6 859 249 369 87 0 chr12 35926383 35926486 -85331044 - ID_B1 SINE B4 -23 201 90 6 859 25 0 0 0 chr12 35926648 35926673 -85330857 + AT_rich Low_complexity Low_complexity 1 25 0 6 859 990 295 75 77 chr12 35927523 35927898 -85329632 - MLT1B LTR MaLR -10 380 7 6 859 445 137 0 0 chr12 35929214 35929287 -85328243 - Lx4A LINE L1 -1 7057 6985 6 859 1817 226 60 9 chr12 35929508 35929927 -85327603 - Lx2B LINE L1 -4 6996 6557 6 859 4044 134 2 16 chr12 35929926 35930569 -85326961 + L1_Mur2 LINE L1 5019 5652 -225 6 859 255 267 56 65 chr12 35932010 35932118 -85325412 + MIR SINE MIR 82 188 -74 6 859 461 398 74 0 chr12 35932161 35932430 -85325100 - MLT1F2 LTR MaLR -13 547 259 6 859 189 0 0 0 chr12 35932443 35932464 -85325066 + (T)n Simple_repeat Simple_repeat 1 21 0 6 859 279 294 141 0 chr12 35932479 35932571 -85324959 + PB1D7 SINE Alu 1 105 -15 6 859 266 307 76 35 chr12 35932588 35932733 -85324797 - MLT1F2 LTR MaLR -338 222 72 6 859 1185 212 4 18 chr12 35933445 35933671 -85323859 + URR1B DNA MER1_type 3 225 0 6 859 2924 219 79 66 chr12 35934225 35935031 -85322499 - RLTR40 LTR ERVK 0 817 1 6 859 2662 241 35 33 chr12 35936516 35937147 -85320383 - Lx5 LINE L1 0 7050 6419 6 859 3525 37 84 62 chr12 35937147 35937612 -85319918 + IAPLTR2_Mm LTR ERVK 1 475 0 6 859 1072 104 25 85 chr12 35937613 35937812 -85319718 + IAPEz-int LTR ERVK 9 195 -6286 6 859 228 321 0 0 chr12 35937812 35937865 -85319665 + RLTR27 LTR ERVK 223 275 -34 6 859 381 94 19 0 chr12 35937865 35937918 -85319612 + IAPEz-int LTR ERVK 168 221 -6260 6 859 1160 221 13 9 chr12 35937919 35938143 -85319387 - Lx5 LINE L1 -627 6423 6199 6 859 6077 86 7 28 chr12 35938293 35939116 -85318414 + RLTR13D1 LTR ERVK 1 806 0 6 859 313 136 15 15 chr12 35939798 35939865 -85317665 + CT-rich Low_complexity Low_complexity 1 67 0 6 859 1401 45 0 0 chr12 35939866 35940043 -85317487 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 6 859 192 77 0 0 chr12 35940115 35940141 -85317389 + (T)n Simple_repeat Simple_repeat 1 26 0 6 859 6180 119 24 7 chr12 35941386 35942258 -85315272 + Lx2 LINE L1 6102 6988 -9 6 859 354 296 27 18 chr12 35942281 35942391 -85315139 + ID_B1 SINE B4 96 206 -18 6 859 201 185 0 53 chr12 35942612 35942669 -85314861 + T-rich Low_complexity Low_complexity 3 56 0 6 859 1374 248 77 7 chr12 35943178 35943478 -85314052 - MTEa LTR MaLR -36 343 23 6 859 282 305 64 64 chr12 35943367 35943507 -85314023 - MT2A LTR ERVL -393 140 1 6 859 557 290 20 33 chr12 35943648 35943798 -85313732 + B3A SINE B2 1 148 -50 6 859 513 0 0 0 chr12 35943800 35943857 -85313673 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 859 273 228 0 0 chr12 35944115 35944172 -85313358 - ID_B1 SINE B4 -63 161 105 6 859 218 333 28 0 chr12 35944283 35944355 -85313175 - PB1D10 SINE Alu -6 111 38 6 859 218 185 365 15 chr12 35944763 35944900 -85312630 - MER5A DNA MER1_type 0 189 5 6 859 372 43 0 0 chr12 35945084 35945130 -85312400 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 859 742 132 50 0 chr12 35946278 35946399 -85311131 + ORR1A2 LTR MaLR 1 127 -200 6 859 6266 96 28 6 chr12 35946407 35947357 -85310173 + Lx LINE L1 5589 6559 -95 6 859 1143 137 94 15 chr12 35947365 35947632 -85309898 + ORR1A2 LTR MaLR 60 346 0 6 859 727 235 111 11 chr12 35947892 35948081 -85309449 + B3 SINE B2 2 209 -7 6 859 29 47 0 0 chr12 35948349 35948392 -85309138 + AT_rich Low_complexity Low_complexity 1 43 0 6 859 2923 180 80 11 chr12 35948998 35949560 -85307970 - RMER20B LTR ERVK -24 603 3 6 859 202 315 60 52 chr12 35951409 35951543 -85305987 + MER5B DNA MER1_type 37 171 -7 6 859 297 213 231 24 chr12 35952301 35952427 -85305103 + MIR SINE MIR 46 196 -72 6 859 247 293 76 44 chr12 35953130 35953355 -85304175 - L1MC1 LINE L1 -2 6331 6100 6 859 552 253 3 15 chr12 35953357 35953478 -85304052 - ID_B1 SINE B4 -35 189 80 6 859 333 316 12 12 chr12 35954337 35954497 -85303033 - L1ME1 LINE L1 -147 6032 5873 6 859 375 127 0 16 chr12 35954529 35954593 -85302937 - PB1D9 SINE Alu -1 119 57 6 859 240 242 48 0 chr12 35954598 35954660 -85302870 + MTEb LTR MaLR 301 365 -14 6 859 232 170 0 0 chr12 35954683 35954730 -85302800 - L1_Mus4 LINE L1 -279 6357 6311 6 859 381 221 66 7 chr12 35954782 35954919 -85302611 - L1M2 LINE L1 -832 5465 5321 6 859 5875 91 34 8 chr12 35954941 35955786 -85301744 - L1_Mus4 LINE L1 -7 6629 5763 6 859 3851 35 2 7 chr12 35955782 35956247 -85301283 + L1Md_F2 LINE L1 6120 6582 0 6 859 993 116 0 0 chr12 35956247 35956394 -85301136 - L1_Mus4 LINE L1 -198 5685 5539 6 859 803 292 110 28 chr12 35956419 35957145 -85300385 - L1M2 LINE L1 -938 5205 4420 6 859 2257 234 211 33 chr12 35957173 35958131 -85299399 - Lx9 LINE L1 -3 7641 6514 6 859 33787 70 3 14 chr12 35958135 35964323 -85293207 - L1Md_F2 LINE L1 -1 6581 466 6 859 797 218 40 44 chr12 35964342 35964553 -85292977 - Lx9 LINE L1 -1109 6535 6329 6 859 207 0 0 0 chr12 35964553 35964576 -85292954 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 859 797 218 40 44 chr12 35964576 35964590 -85292940 - Lx9 LINE L1 -1316 6328 6312 6 859 4634 232 64 47 chr12 35964587 35966283 -85291247 - L1_Rod LINE L1 -2850 2997 1272 7 859 342 183 0 0 chr12 35966402 35966462 -85291068 + L1_Mus2 LINE L1 6030 6089 -477 7 859 249 365 36 18 chr12 35967404 35967524 -85290006 + MIRb SINE MIR 38 166 -102 7 859 559 264 13 53 chr12 35970568 35970720 -85286810 - ID_B1 SINE B4 -1 223 78 7 859 278 330 0 0 chr12 35971348 35971439 -85286091 + G-rich Low_complexity Low_complexity 1 91 0 7 859 2139 193 36 15 chr12 35971651 35972062 -85285468 - MTC LTR MaLR -1 420 1 7 859 445 358 69 30 chr12 35972231 35972565 -85284965 - L2 LINE L2 -2698 721 375 7 859 917 282 22 52 chr12 35972600 35972869 -85284661 - MTE2b LTR MaLR 0 379 119 7 859 248 274 52 26 chr12 35972957 35973073 -85284457 - L1MD LINE L1 -515 5664 5546 7 859 366 338 134 24 chr12 35973179 35973551 -85283979 - L1MD LINE L1 -2378 3768 3359 7 859 491 306 119 32 chr12 35973588 35974005 -85283525 - L1MD LINE L1 -2879 3267 2805 7 859 235 360 4 164 chr12 35974031 35974257 -85283273 - MTEb LTR MaLR -4 375 186 7 859 751 304 51 79 chr12 35974323 35974638 -85282892 - MTE-int LTR MaLR -36 1544 1239 7 859 530 348 48 45 chr12 35974683 35975017 -85282513 - MLT1A1 LTR MaLR -16 392 58 7 859 1036 265 5 9 chr12 35976209 35976426 -85281104 - B3 SINE B2 0 216 1 7 859 208 292 0 0 chr12 35978603 35978651 -85278879 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 859 705 281 93 9 chr12 35978658 35978884 -85278646 - B4A SINE B4 0 292 48 7 859 231 303 33 22 chr12 35979101 35979192 -85278338 + CT-rich Low_complexity Low_complexity 3 94 0 7 859 200 279 14 14 chr12 35979255 35979324 -85278206 + CT-rich Low_complexity Low_complexity 5 73 0 7 859 967 75 105 0 chr12 35979871 35980004 -85277526 + B1_Mus1 SINE Alu 2 148 0 7 859 223 178 0 0 chr12 35980019 35980064 -85277466 + A-rich Low_complexity Low_complexity 1 45 0 7 859 8180 142 25 27 chr12 35980254 35981858 -85275672 + L1_Mur2 LINE L1 3413 5013 -864 7 859 207 186 0 0 chr12 35982062 35982105 -85275425 + G-rich Low_complexity Low_complexity 4 46 0 7 859 372 77 0 0 chr12 35982609 35982661 -85274869 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 7 859 333 217 0 0 chr12 35983551 35983611 -85273919 - B3A SINE B2 -136 62 3 7 859 25 0 0 0 chr12 35983611 35983636 -85273894 + AT_rich Low_complexity Low_complexity 1 25 0 7 859 273 277 62 0 chr12 35983636 35983701 -85273829 + RSINE1 SINE B4 78 146 -19 7 859 253 250 0 50 chr12 35983792 35983872 -85273658 + ID2 SINE ID 2 77 -6 7 859 512 340 35 25 chr12 35984098 35984384 -85273146 - B4A SINE B4 -2 290 2 7 859 21 36 0 0 chr12 35985623 35985651 -85271879 + AT_rich Low_complexity Low_complexity 1 28 0 7 859 785 216 0 0 chr12 35985757 35985905 -85271625 - B1_Mus1 SINE Alu 0 148 1 7 859 287 284 97 92 chr12 35986177 35986394 -85271136 - L1ME1 LINE L1 -38 6140 5923 7 859 333 68 0 0 chr12 35986413 35986457 -85271073 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 859 287 253 127 24 chr12 35986502 35986668 -85270862 - L1MA4A LINE L1 -412 5891 5641 7 859 183 42 0 0 chr12 35986750 35986774 -85270756 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 7 859 939 183 1 0 chr12 35987215 35987928 -85269602 + (CA)n Simple_repeat Simple_repeat 1 713 0 7 859 1568 196 62 20 chr12 35989125 35989478 -85268052 + Lx5 LINE L1 6676 7043 -7 7 859 361 193 229 0 chr12 35990035 35990118 -85267412 - RSINE1 SINE B4 -62 103 2 7 859 411 198 0 0 chr12 35990701 35990776 -85266754 + T-rich Low_complexity Low_complexity 22 96 0 7 859 1156 56 21 0 chr12 35990776 35990920 -85266610 - B1_Mus2 SINE Alu 0 147 1 7 859 411 198 0 0 chr12 35990920 35990940 -85266590 + T-rich Low_complexity Low_complexity 2 21 0 7 859 189 0 0 0 chr12 35992117 35992138 -85265392 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 859 444 86 0 0 chr12 35992202 35992272 -85265258 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 7 859 441 0 0 0 chr12 35993004 35993053 -85264477 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 859 243 0 0 0 chr12 35993053 35993079 -85264451 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 859 1359 83 0 0 chr12 35993520 35993847 -85263683 + (CAG)n Simple_repeat Simple_repeat 1 327 0 7 859 336 269 49 57 chr12 35994486 35994612 -85262918 + PB1D10 SINE Alu 5 126 -1 7 859 485 294 104 89 chr12 35995222 35995315 -85262215 + L1MB8 LINE L1 5596 5690 -488 7 859 1174 29 0 0 chr12 35995315 35995452 -85262078 + B1_Mus2 SINE Alu 1 137 -10 7 859 288 0 41 41 chr12 35995452 35995501 -85262029 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 859 485 294 104 89 chr12 35995501 35995675 -85261855 + L1MB8 LINE L1 5691 5867 -311 7 859 403 273 7 97 chr12 35995686 35995729 -85261801 + RMER30 DNA MER1_type 36 76 -126 7 859 878 110 47 0 chr12 35995729 35995856 -85261674 + B1_Mus2 SINE Alu 2 134 -13 7 859 264 30 0 0 chr12 35995856 35995889 -85261641 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7 859 403 273 7 97 chr12 35995889 35995998 -85261532 + RMER30 DNA MER1_type 77 174 -28 7 859 1848 203 43 9 chr12 35996317 35996754 -85260776 + Lx5 LINE L1 6598 7049 -1 7 859 1142 58 0 0 chr12 35997289 35997427 -85260103 + B1_Mm SINE Alu 1 138 -9 7 859 441 0 0 0 chr12 35997427 35997476 -85260054 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 7 859 526 339 58 58 chr12 35998788 35999130 -85258400 + LTR82A LTR ERVL 402 743 -129 7 859 21 0 0 0 chr12 35999275 35999296 -85258234 + AT_rich Low_complexity Low_complexity 1 21 0 7 859 367 220 95 48 chr12 35999327 35999432 -85258098 + PB1D10 SINE Alu 7 116 -1 7 859 3217 121 31 4 chr12 35999477 36000000 -85257530 + L1_Mur2 LINE L1 5259 5795 -82 7 859 331 87 0 0 chr12 36000000 36000046 -85257484 + Lx4A LINE L1 5802 5847 -1211 1 859 605 295 41 50 chr12 36000048 36000266 -85257264 + ORR1D2 LTR MaLR 35 250 -120 2 859 180 77 0 0 chr12 36000365 36000391 -85257139 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 859 2547 200 94 23 chr12 36000741 36001442 -85256088 + Lx7 LINE L1 6946 7696 0 4 859 2192 166 48 5 chr12 36002064 36002458 -85255072 - MTC LTR MaLR -8 413 3 5 859 474 49 0 0 chr12 36002623 36002684 -85254846 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 859 671 204 0 3 chr12 36003296 36003610 -85253920 + (TG)n Simple_repeat Simple_repeat 1 312 0 7 859 1731 144 31 7 chr12 36003862 36004148 -85253382 - Lx4A LINE L1 -2 7056 6764 8 859 558 0 0 0 chr12 36004887 36004949 -85252581 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 859 1814 256 128 16 chr12 36005469 36006096 -85251434 - Lx8 LINE L1 -296 7177 6481 1 859 327 298 0 0 chr12 36006100 36006194 -85251336 - Lx8 LINE L1 -691 6782 6689 1 859 1499 152 0 16 chr12 36006319 36006567 -85250963 - Lx4A LINE L1 -1 7057 6814 1 859 232 327 192 26 chr12 36006573 36006724 -85250806 + LTR78 LTR ERV1 1074 1249 -55 1 859 542 292 143 31 chr12 36006895 36007153 -85250377 - B4A SINE B4 -4 288 2 1 859 307 234 13 13 chr12 36007411 36007489 -85250041 + ID4_ SINE ID 2 79 -4 1 859 363 347 7 33 chr12 36007506 36007658 -85249872 + RSINE1 SINE B4 4 151 -14 1 859 202 225 0 0 chr12 36008772 36008812 -85248718 + CT-rich Low_complexity Low_complexity 4 43 0 1 859 926 18 9 0 chr12 36008813 36008925 -85248605 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 1 859 2212 174 25 5 chr12 36008942 36009341 -85248189 - MTB_Mm LTR MaLR 0 407 1 1 859 422 248 20 10 chr12 36009676 36009778 -85247752 - B1_Mur4 SINE Alu -1 149 47 2 859 648 0 0 0 chr12 36010577 36010649 -85246881 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 859 908 262 131 36 chr12 36010951 36011382 -85246148 - L1MC1 LINE L1 -305 6028 5550 2 859 1852 131 20 69 chr12 36011382 36011728 -85245802 - ORR1A4 LTR MaLR 0 329 1 2 859 908 260 119 34 chr12 36011728 36011951 -85245579 - L1MC1 LINE L1 -784 5549 5299 2 859 260 341 78 34 chr12 36011953 36012132 -85245398 + ORR1E LTR MaLR 11 197 -162 2 859 549 228 177 10 chr12 36012468 36012773 -85244757 - L1MC1 LINE L1 -866 5280 4925 2 859 1173 269 76 25 chr12 36013053 36013244 -85244286 - L1MC1 LINE L1 -1559 4587 4379 2 859 580 233 175 16 chr12 36013244 36013427 -85244103 - B3 SINE B2 -3 213 2 2 859 1173 269 76 25 chr12 36013427 36013800 -85243730 - L1MC1 LINE L1 -1768 4378 3994 2 859 254 266 13 0 chr12 36013911 36013990 -85243540 + L1MC LINE L1 2703 2782 -3364 2 859 3331 258 31 60 chr12 36014208 36015434 -85242096 - Lx9 LINE L1 -42 7602 6413 2 859 346 329 25 41 chr12 36015830 36016142 -85241388 + L1M5 LINE L1 3778 4084 -2062 2 859 2538 78 36 44 chr12 36016279 36016641 -85240889 + RLTR10D LTR ERVK 1 359 0 2 859 196 30 29 29 chr12 36016952 36016986 -85240544 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 3 859 237 218 125 18 chr12 36016988 36017044 -85240486 - PB1D10 SINE Alu -49 71 10 3 859 3729 218 107 20 chr12 36017355 36018782 -85238748 - Lx5 LINE L1 -18 7032 5448 3 859 21 57 0 0 chr12 36020017 36020052 -85237478 + AT_rich Low_complexity Low_complexity 1 35 0 3 859 574 269 25 0 chr12 36020200 36020319 -85237211 + RSINE1 SINE B4 4 125 -40 3 859 1039 204 0 0 chr12 36020561 36020747 -85236783 - URR1A DNA MER1_type -40 186 1 3 859 680 315 65 17 chr12 36020747 36021260 -85236270 + L1_Mur3 LINE L1 4973 5554 -326 3 859 1476 246 80 11 chr12 36021447 36021886 -85235644 - Lx6 LINE L1 -12 7448 6980 3 859 470 211 17 26 chr12 36021882 36021999 -85235531 - Lx6 LINE L1 -810 6650 6535 3 859 2673 162 10 6 chr12 36021998 36022502 -85235028 - L1_Mur3 LINE L1 -796 5084 4579 3 859 328 259 68 34 chr12 36022563 36022651 -85234879 - B3A SINE B2 -106 92 2 3 859 21 36 0 0 chr12 36022869 36022897 -85234633 + AT_rich Low_complexity Low_complexity 1 28 0 4 859 3045 207 173 25 chr12 36023799 36024650 -85232880 + RMER1B Other Other 49 1025 -41 4 859 246 250 0 0 chr12 36024912 36024964 -85232566 - ORR1B2 LTR MaLR -4 375 324 4 859 2611 216 50 69 chr12 36026722 36027013 -85230517 + Lx7 LINE L1 6971 7241 -455 4 859 5014 201 30 18 chr12 36027013 36028038 -85229492 - Lx5 LINE L1 -3 7047 6010 4 859 2611 216 50 69 chr12 36028038 36028486 -85229044 + Lx7 LINE L1 7242 7696 0 4 859 603 231 143 0 chr12 36028731 36028878 -85228652 - ORR1B2 LTR MaLR -199 168 1 4 859 29 0 0 0 chr12 36029271 36029300 -85228230 + AT_rich Low_complexity Low_complexity 1 29 0 4 859 4681 50 9 0 chr12 36029300 36029878 -85227652 - L1Md_F2 LINE L1 -1 6581 5999 4 859 894 202 45 5 chr12 36030056 36030255 -85227275 + B3 SINE B2 4 210 -6 4 859 240 35 0 0 chr12 36031688 36031717 -85225813 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 859 37666 28 0 2 chr12 36031861 36037978 -85219552 - L1Md_T LINE L1 -2 6580 476 4 859 734 254 21 0 chr12 36038025 36038218 -85219312 - Lx2B LINE L1 -389 6611 6415 5 859 1791 165 30 3 chr12 36038188 36038558 -85218972 + Lx2B LINE L1 6022 6401 -599 5 859 23 0 0 0 chr12 36038558 36038581 -85218949 + AT_rich Low_complexity Low_complexity 1 23 0 5 859 862 297 93 65 chr12 36038587 36039235 -85218295 - Lx9 LINE L1 -7 7637 6972 5 859 436 269 39 78 chr12 36039642 36039795 -85217735 - RSINE1 SINE B4 0 165 19 5 859 405 0 0 0 chr12 36039937 36039982 -85217548 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 859 4116 55 2 0 chr12 36040552 36041160 -85216370 - L1_Mus1 LINE L1 0 6567 6057 5 859 234 0 0 0 chr12 36041541 36041567 -85215963 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 859 680 336 17 25 chr12 36041805 36042040 -85215490 - B4A SINE B4 -14 278 46 5 859 240 349 114 6 chr12 36042216 36042383 -85215147 - MER5A DNA MER1_type -3 186 2 5 859 358 259 59 0 chr12 36042472 36042557 -85214973 + PB1D7 SINE Alu 5 94 -26 5 859 418 226 87 24 chr12 36042701 36042828 -85214702 + MER5B DNA MER1_type 41 175 -3 6 859 23 0 0 0 chr12 36043745 36043768 -85213762 + AT_rich Low_complexity Low_complexity 1 23 0 6 859 227 211 86 17 chr12 36044208 36044266 -85213264 - MER63D DNA AcHobo -682 379 318 6 859 27 62 0 0 chr12 36044408 36044456 -85213074 + AT_rich Low_complexity Low_complexity 1 48 0 6 859 335 226 17 27 chr12 36044689 36044775 -85212755 + B1_Mur4 SINE Alu 27 113 -7 6 860 500 213 0 11 chr12 36044834 36044929 -85212601 + RSINE1 SINE B4 4 97 -68 6 860 586 286 167 15 chr12 36044965 36045235 -85212295 + MTE-int LTR MaLR 1239 1549 -31 6 860 301 309 107 54 chr12 36045578 36045783 -85211747 + MIRb SINE MIR 38 253 -15 6 860 262 200 0 18 chr12 36045790 36045846 -85211684 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 860 2072 136 9 3 chr12 36047046 36047370 -85210160 + ORR1A3 LTR MaLR 1 326 0 6 860 242 329 0 0 chr12 36047415 36047497 -85210033 + ID4 SINE ID 2 83 0 7 860 704 155 21 14 chr12 36047762 36047906 -85209624 + Lx9 LINE L1 7321 7465 -179 7 860 423 148 69 0 chr12 36047927 36048028 -85209502 + Lx9 LINE L1 7530 7637 -7 7 860 461 79 0 0 chr12 36048177 36048240 -85209290 - L1_Mus4 LINE L1 -943 5693 5631 7 860 653 312 0 0 chr12 36048240 36048384 -85209146 - B3A SINE B2 -52 146 3 7 860 3250 73 2 2 chr12 36048567 36048990 -85208540 + L1_Mus2 LINE L1 6144 6566 0 7 860 8645 127 11 15 chr12 36050767 36053171 -85204359 - L1_Mus4 LINE L1 -1 6635 4241 7 860 5315 144 7 9 chr12 36053196 36054166 -85203364 + L1_Mur2 LINE L1 3263 4230 -1647 7 860 344 292 18 70 chr12 36054271 36054385 -85203145 - MER20 DNA MER1_type -106 113 6 7 860 315 0 0 0 chr12 36054547 36054582 -85202948 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 860 1100 99 0 0 chr12 36054583 36054725 -85202805 + B1_Mm SINE Alu 4 145 -2 7 860 1146 36 0 0 chr12 36054730 36054869 -85202661 + (GGAAA)n Simple_repeat Simple_repeat 3 141 0 8 860 4814 136 28 21 chr12 36054869 36055599 -85201931 + Lx LINE L1 5833 6578 -76 8 860 3194 46 18 0 chr12 36055599 36055988 -85201542 - MTA_Mm LTR MaLR 0 396 1 8 860 4814 136 28 21 chr12 36055988 36056072 -85201458 + Lx LINE L1 6579 6653 -1 8 860 324 158 0 0 chr12 36056780 36056837 -85200693 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 860 2198 185 62 31 chr12 36058440 36058926 -85198604 + RLTR16 LTR ERVK 5 505 0 8 860 445 331 39 7 chr12 36058937 36059092 -85198438 + MER63B DNA AcHobo 277 436 0 8 860 477 0 0 0 chr12 36059244 36059297 -85198233 + (TA)n Simple_repeat Simple_repeat 2 54 0 8 860 925 123 380 153 chr12 36059312 36059620 -85197910 + ORR1C1 LTR MaLR 1 378 0 8 860 23955 176 46 7 chr12 36059624 36063966 -85193564 + MERVL_2A-int LTR ERVL 5 4511 -1250 8 860 203 0 0 36 chr12 36063966 36063994 -85193536 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 860 23955 176 46 7 chr12 36063994 36064018 -85193512 + MERVL_2A-int LTR ERVL 4512 4537 -1224 8 860 486 346 39 46 chr12 36064102 36064384 -85193146 - B4A SINE B4 -12 280 1 9 860 3376 30 2 10 chr12 36065884 36066283 -85191247 + MTA_Mm LTR MaLR 1 396 0 9 860 418 333 133 25 chr12 36066522 36066876 -85190654 - MLT1C LTR MaLR -38 429 38 9 860 488 301 30 8 chr12 36068628 36068762 -85188768 + B4A SINE B4 152 288 -4 9 860 744 12 0 0 chr12 36069936 36070021 -85187509 + (TCC)n Simple_repeat Simple_repeat 1 85 0 9 860 5841 172 20 23 chr12 36070109 36070967 -85186563 - L1VL4 LINE L1 -3457 2420 1559 9 860 180 0 0 0 chr12 36070967 36070987 -85186543 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 860 5841 175 22 21 chr12 36070987 36071405 -85186125 - L1VL4 LINE L1 -4319 1558 1151 9 860 2649 72 3 3 chr12 36071405 36071779 -85185751 + L1_Mus1 LINE L1 6210 6567 0 9 860 2089 197 29 12 chr12 36071779 36072060 -85185470 - L1VL4 LINE L1 -5507 1150 857 9 860 2977 271 79 11 chr12 36072055 36073149 -85184381 - L1_Mur3 LINE L1 -464 5416 4249 9 860 1636 237 72 8 chr12 36073154 36073643 -85183887 + L1_Mur3 LINE L1 3727 4246 -1634 9 860 979 281 40 24 chr12 36073642 36074017 -85183513 - L1_Mur3 LINE L1 -544 5336 4956 9 860 351 0 0 0 chr12 36074018 36074057 -85183473 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 860 364 198 0 55 chr12 36075278 36075369 -85182161 - L1MD LINE L1 -2259 3887 3802 1 860 267 353 17 25 chr12 36075568 36075687 -85181843 - L2 LINE L2 -1371 2048 1931 1 860 302 246 0 0 chr12 36075808 36075865 -85181665 - MIR3 SINE MIR -21 187 131 1 860 255 250 12 50 chr12 36075942 36076022 -85181508 - MIR SINE MIR 0 262 186 1 860 468 255 0 0 chr12 36076170 36076268 -85181262 + PB1D9 SINE Alu 6 103 -17 1 860 248 378 79 21 chr12 36077785 36077974 -85179556 + Tigger5 DNA MER2_type 22 221 -2185 1 860 1195 98 0 0 chr12 36078339 36078502 -85179028 - B2_Mm2 SINE B2 -31 164 2 1 860 21 36 0 0 chr12 36078732 36078760 -85178770 + AT_rich Low_complexity Low_complexity 1 28 0 1 860 739 172 219 0 chr12 36078779 36078948 -85178582 - B3 SINE B2 -10 206 1 1 860 295 342 75 31 chr12 36081846 36082006 -85175524 + MLT1F LTR MaLR 68 234 -314 1 860 540 0 0 0 chr12 36082669 36082729 -85174801 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 860 1164 272 37 56 chr12 36083377 36083608 -85173922 + MTE2a LTR MaLR 1 213 -166 1 860 3117 54 0 3 chr12 36083608 36083996 -85173534 - L1_Mus2 LINE L1 0 6566 6180 1 860 1164 272 37 56 chr12 36083996 36084141 -85173389 + MTE2a LTR MaLR 214 370 -9 1 860 612 161 0 0 chr12 36084649 36084742 -85172788 - MTC LTR MaLR -328 93 1 1 860 3210 183 144 28 chr12 36084742 36085520 -85172010 - MTC-int LTR MaLR 0 1258 391 1 860 485 282 63 16 chr12 36086043 36086234 -85171296 - L3b LINE CR1 -281 201 2 1 860 457 335 71 10 chr12 36086701 36086897 -85170633 - MIR SINE MIR -9 253 46 1 860 582 15 0 0 chr12 36087089 36087156 -85170374 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 860 1744 180 82 0 chr12 36087203 36087558 -85169972 + ORR1C2 LTR MaLR 1 384 0 1 860 460 306 113 30 chr12 36088311 36088577 -85168953 + B4A SINE B4 5 292 0 1 860 1101 82 0 0 chr12 36089821 36089968 -85167562 - B1_Mm SINE Alu 0 147 1 1 860 180 0 0 0 chr12 36090004 36090024 -85167506 + (A)n Simple_repeat Simple_repeat 1 20 0 1 860 214 195 0 0 chr12 36091260 36091301 -85166229 + A-rich Low_complexity Low_complexity 1 41 0 1 860 276 53 0 0 chr12 36091750 36091788 -85165742 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 860 1021 185 102 5 chr12 36091965 36092171 -85165359 - URR1A DNA MER1_type 0 226 1 1 860 285 56 0 0 chr12 36093778 36093814 -85163716 + U2 snRNA snRNA 1 36 -152 1 860 8244 37 2 10 chr12 36094249 36095334 -85162196 - L1Md_F2 LINE L1 0 6582 5505 1 860 7257 75 16 1 chr12 36095883 36096991 -85160539 + L1_Mus1 LINE L1 5440 6566 -1 1 860 315 71 0 0 chr12 36098289 36098331 -85159199 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 860 919 241 104 20 chr12 36098889 36099186 -85158344 - RMER4B LTR ERVK -263 322 1 1 860 688 218 231 17 chr12 36099186 36099476 -85158054 + Lx9 LINE L1 7284 7635 -9 1 860 483 243 87 36 chr12 36099479 36099786 -85157744 + L1M2 LINE L1 3029 3344 -2799 1 860 1424 197 98 17 chr12 36099793 36100059 -85157471 + Lx9 LINE L1 7239 7526 -118 1 860 891 0 0 0 chr12 36100059 36100158 -85157372 + (GAA)n Simple_repeat Simple_repeat 2 100 0 1 860 1424 197 98 17 chr12 36100158 36100204 -85157326 + Lx9 LINE L1 7527 7584 -60 1 860 2181 172 52 72 chr12 36100204 36100744 -85156786 + RLTR24 LTR ERV1 1 529 0 1 860 1424 197 98 17 chr12 36100744 36100787 -85156743 + Lx9 LINE L1 7585 7623 -21 1 860 22 35 0 0 chr12 36100794 36100823 -85156707 + AT_rich Low_complexity Low_complexity 1 29 0 1 860 289 248 122 14 chr12 36100823 36100999 -85156531 + L1M2 LINE L1 3380 3576 -2567 1 860 23 0 0 0 chr12 36102405 36102428 -85155102 + AT_rich Low_complexity Low_complexity 1 23 0 1 860 1599 194 33 82 chr12 36103386 36103456 -85154074 - ORR1D1 LTR MaLR -1 373 303 1 860 3723 156 56 16 chr12 36103456 36104122 -85153408 - RLTR17 LTR ERVK 0 692 1 1 860 1599 194 33 82 chr12 36104122 36104443 -85153087 - ORR1D1 LTR MaLR -72 302 1 1 860 649 282 174 5 chr12 36104917 36105124 -85152406 - B4A SINE B4 -50 242 1 1 860 591 275 186 26 chr12 36105539 36105964 -85151566 + L1MA4 LINE L1 3706 4198 -1945 1 860 1173 82 0 0 chr12 36105965 36106123 -85151407 + B2_Mm2 SINE B2 1 158 -37 1 860 1191 112 0 0 chr12 36106124 36106303 -85151227 + (TAAA)n Simple_repeat Simple_repeat 1 179 0 1 860 1174 301 120 25 chr12 36106314 36106945 -85150585 + L1MA4 LINE L1 4184 4881 -1262 1 860 500 30 15 0 chr12 36106945 36107011 -85150519 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 860 1174 301 120 25 chr12 36107011 36107483 -85150047 + L1MA4 LINE L1 4882 5392 -751 1 860 7689 60 7 3 chr12 36107514 36108558 -85148972 - L1_Mus1 LINE L1 -1 6566 5519 1 860 1314 259 94 12 chr12 36108567 36109055 -85148475 + L1MA4 LINE L1 5405 5932 -368 1 860 22 0 0 0 chr12 36109157 36109179 -85148351 + AT_rich Low_complexity Low_complexity 1 22 0 1 860 8242 84 75 9 chr12 36109275 36111195 -85146335 + L1VL2 LINE L1 65 2119 -1496 1 860 1620 67 17 4 chr12 36111185 36111425 -85146105 + L1VL2 LINE L1 2747 2989 -626 1 860 21 0 0 0 chr12 36111919 36111940 -85145590 + AT_rich Low_complexity Low_complexity 1 21 0 1 860 200 206 0 0 chr12 36112084 36112118 -85145412 + T-rich Low_complexity Low_complexity 2 35 0 1 860 5479 136 13 5 chr12 36112119 36112994 -85144536 - Lx2 LINE L1 0 6997 6116 1 860 194 98 0 47 chr12 36113780 36113823 -85143707 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 860 510 219 217 7 chr12 36114992 36115144 -85142386 + B3 SINE B2 33 216 0 1 860 270 270 116 56 chr12 36116371 36116587 -85140943 + L1_Mur1 LINE L1 1549 1777 -4109 1 860 2607 161 10 18 chr12 36116646 36117141 -85140389 + Lx4B LINE L1 6488 6978 -80 1 860 33 56 0 0 chr12 36117158 36117212 -85140318 + AT_rich Low_complexity Low_complexity 1 54 0 1 860 330 321 70 6 chr12 36117839 36117996 -85139534 + L1_Rod LINE L1 813 979 -6629 1 860 1744 256 175 49 chr12 36118001 36118843 -85138687 + L1_Rod LINE L1 1113 2180 -3667 1 860 738 221 14 14 chr12 36118843 36118990 -85138540 + B1_Mur2 SINE Alu 2 148 -1 1 860 1744 262 220 68 chr12 36118990 36119459 -85138071 + L1_Rod LINE L1 2181 2620 -3227 1 860 629 103 0 49 chr12 36119466 36119589 -85137941 + Lx LINE L1 6534 6650 -4 1 860 349 339 33 40 chr12 36119609 36119894 -85137636 + L1MA4 LINE L1 5662 5942 -358 1 860 522 0 0 0 chr12 36119894 36119952 -85137578 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 860 349 339 33 40 chr12 36119952 36119970 -85137560 + L1MA4 LINE L1 5943 5963 -337 1 860 21 57 0 0 chr12 36120396 36120431 -85137099 + AT_rich Low_complexity Low_complexity 1 35 0 1 860 1376 65 43 0 chr12 36120525 36120709 -85136821 - B2_Mm2 SINE B2 -2 193 2 1 860 1241 305 92 105 chr12 36121265 36122210 -85135320 + Charlie1a DNA MER1_type 60 981 -474 1 860 1001 291 11 7 chr12 36122210 36122497 -85135033 + B4A SINE B4 2 289 -3 1 860 1241 305 92 105 chr12 36122497 36122669 -85134861 + Charlie1a DNA MER1_type 982 1163 -292 1 860 1294 145 69 141 chr12 36122795 36123100 -85134430 + RLTR24 LTR ERV1 1 283 -246 1 860 180 0 0 0 chr12 36123228 36123248 -85134282 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1 860 2307 217 28 8 chr12 36123255 36123929 -85133601 - Lx4B LINE L1 -38 6962 6263 1 860 463 298 47 49 chr12 36124697 36124982 -85132548 + MER47B DNA MER2_type 39 413 -5 1 860 495 0 0 0 chr12 36125457 36125512 -85132018 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 860 22 80 0 0 chr12 36125810 36125860 -85131670 + AT_rich Low_complexity Low_complexity 1 50 0 1 860 939 28 0 0 chr12 36125861 36125968 -85131562 + U6 snRNA snRNA 1 107 0 1 860 31575 74 1 15 chr12 36125968 36131116 -85126414 + L1Md_F2 LINE L1 511 5586 -297 1 860 7911 56 6 0 chr12 36131116 36132103 -85125427 + L1Md_F2 LINE L1 5587 6579 -3 1 860 774 32 0 0 chr12 36132328 36132421 -85125109 + (GA)n Simple_repeat Simple_repeat 1 93 0 1 860 4522 50 45 0 chr12 36132595 36133341 -85124189 - L1Md_F2 LINE L1 -579 6003 5211 1 860 4288 68 4 2 chr12 36133341 36133903 -85123627 + L1Md_F2 LINE L1 6017 6579 -3 1 860 1123 59 0 12 chr12 36134339 36134510 -85123020 + (GTTTG)n Simple_repeat Simple_repeat 2 170 0 1 860 26 30 0 0 chr12 36134601 36134634 -85122896 + AT_rich Low_complexity Low_complexity 1 33 0 1 860 1061 231 0 18 chr12 36134978 36135198 -85122332 + B3 SINE B2 1 216 0 1 860 431 81 39 39 chr12 36136151 36136254 -85121276 + (CAGAGA)n Simple_repeat Simple_repeat 6 108 0 1 860 476 77 0 13 chr12 36136506 36136585 -85120945 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 860 444 326 78 41 chr12 36137247 36137516 -85120014 - MLT2B1 LTR ERVL 0 520 242 1 860 1024 85 0 0 chr12 36137864 36137993 -85119537 + B1_Mus1 SINE Alu 5 133 -15 1 860 207 0 0 0 chr12 36137997 36138020 -85119510 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 860 611 264 77 6 chr12 36138118 36138301 -85119229 - B3A SINE B2 -1 197 2 1 860 270 324 86 27 chr12 36138576 36138798 -85118732 - RMER15 LTR ERVL -16 559 325 1 860 568 77 0 0 chr12 36139157 36139235 -85118295 - MTC LTR MaLR -343 78 1 1 860 395 280 70 128 chr12 36140198 36140370 -85117160 + RSINE1 SINE B4 4 165 0 1 860 198 143 0 0 chr12 36140371 36140406 -85117124 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 860 23 54 0 0 chr12 36140489 36140526 -85117004 + AT_rich Low_complexity Low_complexity 1 37 0 1 860 210 71 0 0 chr12 36140549 36140577 -85116953 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1 860 747 200 0 0 chr12 36140613 36140743 -85116787 - B3 SINE B2 -86 130 1 1 860 1104 189 15 0 chr12 36140901 36141102 -85116428 - B3 SINE B2 -11 205 2 1 860 408 323 57 97 chr12 36141673 36142106 -85115424 + MLT1E1 LTR MaLR 105 632 -22 1 860 313 281 31 126 chr12 36142319 36142478 -85115052 - ID_B1 SINE B4 -80 144 1 1 860 231 215 16 8 chr12 36142689 36142811 -85114719 + (TA)n Simple_repeat Simple_repeat 1 123 0 1 860 30 27 0 0 chr12 36142811 36142848 -85114682 + AT_rich Low_complexity Low_complexity 1 37 0 1 860 365 294 10 0 chr12 36143788 36143890 -85113640 - MLT2B3 LTR ERVL -446 108 6 1 860 325 213 0 0 chr12 36144168 36144243 -85113287 - Lx7 LINE L1 -18 7678 7604 1 860 585 0 0 0 chr12 36144268 36144333 -85113197 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 860 261 264 16 40 chr12 36144370 36144496 -85113034 - L1MEd LINE L1 -5994 125 3 1 860 200 350 34 17 chr12 36144504 36144623 -85112907 + L2 LINE L2 1935 2055 -1364 1 860 3060 256 58 54 chr12 36145478 36146485 -85111045 + RMER1C Other Other 375 1332 -10 2 860 435 269 81 0 chr12 36146526 36146686 -85110844 + L1MA9 LINE L1 5959 6131 -181 2 860 585 64 0 0 chr12 36146712 36146790 -85110740 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 860 441 0 0 0 chr12 36149722 36149771 -85107759 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 860 290 26 26 0 chr12 36150154 36150193 -85107337 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 860 5752 58 3 3 chr12 36152079 36152809 -85104721 - L1Md_F2 LINE L1 -1 6581 5852 2 860 182 150 25 0 chr12 36153181 36153221 -85104309 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 2 860 221 0 65 43 chr12 36153788 36153834 -85103696 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 2 860 643 266 187 28 chr12 36153897 36154496 -85103034 + L1MA6 LINE L1 4074 4767 -1376 2 860 1645 289 54 39 chr12 36154481 36155319 -85102211 + L1MA6 LINE L1 5429 6278 -22 2 860 258 217 70 35 chr12 36155570 36155656 -85101874 - Lx2B LINE L1 0 7000 6912 2 860 1458 137 121 8 chr12 36155675 36155940 -85101590 + RLTR17 LTR ERVK 8 302 -390 2 860 6997 70 9 5 chr12 36155940 36156902 -85100628 - L1Md_F2 LINE L1 -16 6566 5601 2 860 1787 53 0 0 chr12 36156901 36157128 -85100402 + L1Md_F2 LINE L1 5359 5585 -298 2 860 2147 168 64 7 chr12 36157128 36157259 -85100271 + RLTR17 LTR ERVK 262 405 -287 2 860 3434 64 0 0 chr12 36157259 36157695 -85099835 + L1_Mus1 LINE L1 6132 6567 0 2 860 2147 168 64 7 chr12 36157695 36157971 -85099559 + RLTR17 LTR ERVK 406 691 -1 2 860 17129 158 20 25 chr12 36157972 36162501 -85095029 - Lx2B LINE L1 -84 6916 2415 2 860 233 347 40 10 chr12 36163472 36163571 -85093959 + LTR90B LTR LTR 684 785 -11 2 860 226 329 39 13 chr12 36163938 36164092 -85093438 + L1M5 LINE L1 5492 5649 -475 2 860 2744 229 22 33 chr12 36164165 36164797 -85092733 - RLTR17 LTR ERVK -65 627 3 2 860 2455 201 7 40 chr12 36164797 36165329 -85092201 + RLTR31_Mur LTR ERVK 40 553 0 2 860 396 294 72 48 chr12 36165774 36165899 -85091631 - B1_Mur1 SINE Alu -19 130 3 2 860 29 84 0 0 chr12 36166025 36166096 -85091434 + AT_rich Low_complexity Low_complexity 1 71 0 2 860 352 346 34 29 chr12 36167960 36168198 -85089332 + Arthur1 DNA Tip100 1973 2211 -1736 2 860 1021 112 78 50 chr12 36168202 36168381 -85089149 - B2_Mm2 SINE B2 -8 187 4 2 860 634 324 61 57 chr12 36168787 36169229 -85088301 + Arthur1 DNA Tip100 2305 2748 -1199 2 860 259 293 76 25 chr12 36170045 36170164 -85087366 - PB1 SINE Alu -2 125 1 2 860 75 57 0 0 chr12 36170799 36170923 -85086607 + AT_rich Low_complexity Low_complexity 1 124 0 2 860 276 247 149 11 chr12 36170959 36171053 -85086477 - PB1D9 SINE Alu -11 109 3 2 860 249 357 132 19 chr12 36171342 36171653 -85085877 + Tigger13a DNA MER2_type 382 727 -44 2 860 318 132 0 0 chr12 36172724 36172777 -85084753 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 860 758 216 159 34 chr12 36172779 36173018 -85084512 - B4A SINE B4 -18 274 6 2 860 284 184 44 16 chr12 36175515 36175596 -85081934 + L1MB8 LINE L1 6110 6171 -7 2 860 685 216 7 29 chr12 36175601 36175739 -85081791 + B1_Mur3 SINE Alu 1 135 -14 2 860 300 53 0 0 chr12 36175739 36175777 -85081753 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 861 278 106 21 0 chr12 36176932 36176979 -85080551 + (GGAGA)n Simple_repeat Simple_repeat 2 49 0 2 861 2590 92 0 47 chr12 36177743 36178086 -85079444 - ORR1A2 LTR MaLR 0 327 1 2 861 981 273 193 31 chr12 36178518 36178964 -85078566 - Lx8 LINE L1 -1 7472 6955 2 861 269 273 25 25 chr12 36179506 36179585 -85077945 + MER44D DNA MER2_type 22 100 -605 2 861 484 156 44 44 chr12 36180385 36180566 -85076964 - RMER17C LTR ERVK -133 277 97 2 861 1094 181 87 19 chr12 36180594 36180802 -85076728 - URR1A DNA MER1_type 0 226 5 2 861 304 291 89 22 chr12 36180864 36181043 -85076487 - MLT1D LTR MaLR -212 293 103 2 861 297 368 58 37 chr12 36181159 36181348 -85076182 - ORR1E LTR MaLR -166 193 1 2 861 188 195 24 0 chr12 36181678 36181719 -85075811 + MIR SINE MIR 98 139 -69 2 861 1341 158 42 5 chr12 36183462 36183678 -85073852 - URR1B DNA MER1_type 0 225 2 2 861 21 71 0 0 chr12 36184672 36184714 -85072816 + AT_rich Low_complexity Low_complexity 1 42 0 2 861 180 0 0 0 chr12 36184763 36184783 -85072747 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 861 789 156 68 26 chr12 36186005 36186196 -85071334 + MTC-int LTR MaLR 1060 1258 0 2 861 1813 165 126 13 chr12 36186200 36186574 -85070956 + MTC LTR MaLR 6 421 0 2 861 264 265 29 0 chr12 36186738 36186806 -85070724 - ID4 SINE ID 0 83 14 2 861 337 182 0 0 chr12 36186871 36186926 -85070604 + Lx9 LINE L1 6407 6461 -1183 2 861 404 226 185 16 chr12 36186926 36187110 -85070420 + Lx9 LINE L1 7428 7642 -2 2 861 477 236 111 101 chr12 36187124 36187170 -85070360 - B3 SINE B2 -12 204 171 2 861 396 0 0 0 chr12 36187170 36187214 -85070316 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 861 477 236 111 101 chr12 36187214 36187365 -85070165 - B3 SINE B2 -46 170 5 2 861 610 301 61 4 chr12 36187383 36187646 -85069884 - L1MA6 LINE L1 -5 6295 6018 2 861 26 0 0 0 chr12 36188192 36188218 -85069312 + AT_rich Low_complexity Low_complexity 1 26 0 2 861 275 279 77 101 chr12 36190030 36190237 -85067293 + L1M5 LINE L1 4502 4703 -1443 2 861 267 31 0 0 chr12 36191099 36191131 -85066399 + (CAGTA)n Simple_repeat Simple_repeat 1 32 0 2 861 538 298 11 32 chr12 36191154 36191341 -85066189 + B3A SINE B2 1 183 -15 2 861 521 233 53 23 chr12 36191874 36192006 -85065524 + RSINE1 SINE B4 1 136 -29 2 861 255 93 0 0 chr12 36194110 36194153 -85063377 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 861 281 233 22 28 chr12 36194219 36194400 -85063130 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 861 1102 218 69 19 chr12 36195221 36195483 -85062047 + B4 SINE B4 2 276 -16 2 861 1052 134 215 0 chr12 36196121 36196307 -85061223 + URR1A DNA MER1_type 1 226 0 2 861 281 329 125 0 chr12 36196598 36196750 -85060780 + MER5A DNA MER1_type 16 186 -3 2 861 1144 155 5 36 chr12 36198397 36198618 -85058912 - ORR1D-int LTR MaLR -102 1268 1055 2 861 1338 229 42 74 chr12 36198640 36198820 -85058710 + ORR1D2 LTR MaLR 5 178 -192 2 861 255 31 0 0 chr12 36198820 36198852 -85058678 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 861 1338 229 42 74 chr12 36198852 36199049 -85058481 + ORR1D2 LTR MaLR 179 370 0 2 861 278 247 183 119 chr12 36200023 36200225 -85057305 + MIRb SINE MIR 49 263 -5 2 861 274 336 89 8 chr12 36201779 36201902 -85055628 - MIR SINE MIR -70 192 60 2 861 890 194 118 5 chr12 36204749 36204936 -85052594 - B3 SINE B2 -8 208 1 2 861 235 343 81 0 chr12 36205280 36205379 -85052151 - MER5A DNA MER1_type 0 189 83 2 861 818 103 55 16 chr12 36206236 36206364 -85051166 + ORR1D1-int LTR MaLR 1238 1370 0 2 861 1137 193 161 40 chr12 36206369 36206698 -85050832 + ORR1D1 LTR MaLR 6 374 0 2 861 698 226 36 0 chr12 36206817 36206954 -85050576 + B1_Mus2 SINE Alu 1 142 -5 2 861 189 0 0 0 chr12 36207859 36207880 -85049650 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 861 237 240 20 0 chr12 36208732 36208782 -85048748 - MER5A DNA MER1_type -121 68 18 2 861 483 18 0 0 chr12 36208784 36208840 -85048690 + (TGG)n Simple_repeat Simple_repeat 2 57 0 2 861 189 371 0 53 chr12 36210188 36210282 -85047248 - MIR3 SINE MIR -115 93 5 2 861 195 173 0 0 chr12 36210492 36210544 -85046986 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 861 226 214 0 0 chr12 36210598 36210640 -85046890 + GA-rich Low_complexity Low_complexity 1 42 0 2 861 579 40 0 0 chr12 36210687 36210761 -85046769 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 861 505 285 193 21 chr12 36210801 36211034 -85046496 - B4A SINE B4 -18 274 2 2 861 1630 272 71 33 chr12 36212112 36212689 -85044841 + Lx7 LINE L1 6634 7232 -464 2 861 1838 250 29 34 chr12 36212729 36213218 -85044312 + Lx6 LINE L1 6574 7417 -43 2 861 371 170 160 0 chr12 36213286 36213380 -85044150 + Lx8 LINE L1 7365 7473 0 2 861 348 64 0 0 chr12 36213488 36213535 -85043995 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 861 181 330 20 99 chr12 36215365 36215466 -85042064 + MIR SINE MIR 1 93 -169 2 861 285 29 0 0 chr12 36215921 36215955 -85041575 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 861 29 0 0 0 chr12 36218342 36218371 -85039159 + AT_rich Low_complexity Low_complexity 1 29 0 2 861 351 0 0 0 chr12 36218554 36218593 -85038937 + (A)n Simple_repeat Simple_repeat 1 39 0 2 861 234 183 11 68 chr12 36219670 36219758 -85037772 + (CCCCG)n Simple_repeat Simple_repeat 2 84 0 2 861 598 310 97 22 chr12 36220766 36221325 -85036205 + Lx8 LINE L1 5445 6103 -1541 2 861 275 288 0 36 chr12 36222107 36222190 -85035340 + PB1D10 SINE Alu 5 84 -33 2 861 206 105 0 26 chr12 36222619 36222658 -85034872 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 861 23 0 0 0 chr12 36223454 36223477 -85034053 + AT_rich Low_complexity Low_complexity 1 23 0 2 861 186 363 113 11 chr12 36223532 36223797 -85033733 - L2c LINE L2 -54 3333 3042 2 861 358 273 132 37 chr12 36224193 36224383 -85033147 + MER119 DNA MER1_type 368 575 -8 2 861 474 341 36 0 chr12 36224860 36224998 -85032532 - RSINE1 SINE B4 -1 164 22 2 861 24 0 0 0 chr12 36226289 36226313 -85031217 + AT_rich Low_complexity Low_complexity 1 24 0 2 861 918 117 0 120 chr12 36226973 36227157 -85030373 - ORR1A3 LTR MaLR -159 167 6 2 861 329 327 20 0 chr12 36228232 36228333 -85029197 + LTR33B LTR ERVL 399 501 -2 2 861 1612 152 18 11 chr12 36228806 36229085 -85028445 - RLTR15 LTR ERVK -78 281 1 2 861 791 251 111 7 chr12 36229094 36229383 -85028147 - L1M4 LINE L1 -539 5639 5321 2 861 2600 175 5 2 chr12 36229391 36229821 -85027709 + Lx4A LINE L1 6626 7056 -2 2 861 207 0 0 0 chr12 36229821 36229844 -85027686 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2 861 189 418 9 9 chr12 36230128 36230239 -85027291 + MIR SINE MIR 2 112 -150 2 861 634 33 21 11 chr12 36230591 36230684 -85026846 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 2 861 1237 77 69 37 chr12 36230757 36230946 -85026584 - B2_Mm2 SINE B2 0 195 1 2 861 521 154 60 0 chr12 36230954 36231071 -85026459 - Lx9 LINE L1 -18 7626 7503 3 861 432 0 0 0 chr12 36231071 36231119 -85026411 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 861 324 0 0 0 chr12 36231119 36231154 -85026376 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 861 371 169 225 0 chr12 36231160 36231249 -85026281 - Lx9 LINE L1 -204 7440 7332 3 861 3089 248 19 75 chr12 36231278 36232103 -85025427 - Lx6 LINE L1 -176 7284 6506 3 861 1573 259 55 38 chr12 36232102 36232572 -85024958 + Lx6 LINE L1 6009 6486 -974 3 861 879 156 7 26 chr12 36232646 36232797 -85024733 + B1_Mus1 SINE Alu 1 148 0 3 861 1080 215 0 23 chr12 36233850 36234064 -85023466 - B3 SINE B2 -6 210 2 3 861 4924 149 61 22 chr12 36235539 36236507 -85021023 - RLTR25A LTR ERVK 0 1103 1 3 861 978 308 70 18 chr12 36236628 36236959 -85020571 - ORR1E LTR MaLR -6 353 6 3 861 384 314 134 20 chr12 36237055 36237302 -85020228 - B4A SINE B4 -16 276 2 3 861 212 262 16 0 chr12 36239434 36239495 -85018035 + (TATG)n Simple_repeat Simple_repeat 1 62 0 3 861 380 284 42 33 chr12 36239605 36239725 -85017805 - B3A SINE B2 0 198 78 3 861 890 270 50 8 chr12 36239936 36240175 -85017355 - B4A SINE B4 -42 250 2 3 861 243 73 18 35 chr12 36241221 36241278 -85016252 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 3 861 372 231 179 34 chr12 36242071 36242250 -85015280 + Lx7 LINE L1 7119 7323 -373 3 861 1227 326 119 12 chr12 36242493 36243079 -85014451 - MER44D DNA MER2_type -31 674 26 3 861 1636 229 22 22 chr12 36243333 36243695 -85013835 + ORR1D1 LTR MaLR 5 366 -8 3 861 11759 64 15 1 chr12 36244787 36246340 -85011190 + L1Md_F2 LINE L1 4013 5586 -297 3 861 7995 51 0 5 chr12 36246340 36247338 -85010192 + L1Md_F2 LINE L1 5587 6579 -3 3 861 278 264 111 88 chr12 36248691 36248901 -85008629 + LTR81B LTR ERV1? 97 310 -1040 3 861 483 145 0 0 chr12 36248907 36248990 -85008540 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 861 322 317 0 8 chr12 36250596 36250720 -85006810 + B3A SINE B2 1 123 -75 3 861 238 288 0 27 chr12 36251732 36251807 -85005723 - LTR58 LTR ERV1 -311 368 296 3 861 402 316 56 63 chr12 36252201 36252343 -85005187 - RSINE1 SINE B4 -22 143 3 3 861 281 211 35 0 chr12 36252519 36252576 -85004954 + B1_Mur4 SINE Alu 29 87 -63 3 861 279 0 0 0 chr12 36252598 36252629 -85004901 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 861 463 326 60 22 chr12 36254281 36254733 -85002797 - L1MD3 LINE L1 -238 6004 5538 3 861 396 0 0 0 chr12 36254745 36254789 -85002741 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 861 271 350 82 16 chr12 36255473 36255595 -85001935 + MIR SINE MIR 8 137 -125 3 861 195 350 40 30 chr12 36255762 36255862 -85001668 + MIRb SINE MIR 27 127 -141 3 861 2473 278 64 44 chr12 36255953 36256809 -85000721 + Lx8 LINE L1 6408 7280 -193 3 861 27 62 0 0 chr12 36257665 36257713 -84999817 + AT_rich Low_complexity Low_complexity 1 48 0 3 861 267 299 36 36 chr12 36257933 36258044 -84999486 - PB1D7 SINE Alu -9 111 1 3 861 362 324 136 35 chr12 36259040 36259414 -84998116 + L1M5 LINE L1 4474 4885 -1261 3 861 1100 259 96 60 chr12 36259513 36259661 -84997869 + L1_Rod LINE L1 4415 4565 -1282 3 861 378 0 0 0 chr12 36259661 36259703 -84997827 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 861 1128 33 20 0 chr12 36259703 36259855 -84997675 + (CA)n Simple_repeat Simple_repeat 1 156 0 3 861 1100 259 96 60 chr12 36259855 36260207 -84997323 + L1_Rod LINE L1 4566 4933 -914 3 861 390 101 0 0 chr12 36260823 36260892 -84996638 + (T)n Simple_repeat Simple_repeat 1 69 0 3 861 198 236 0 0 chr12 36261119 36261174 -84996356 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 861 1112 75 6 24 chr12 36261688 36261853 -84995677 + L1_Mus1 LINE L1 6401 6562 -5 3 861 31 0 0 0 chr12 36261854 36261885 -84995645 + AT_rich Low_complexity Low_complexity 1 31 0 3 861 644 323 20 52 chr12 36262156 36262404 -84995126 + B4A SINE B4 20 259 -33 3 861 441 0 0 0 chr12 36262479 36262528 -84995002 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 861 2091 164 68 10 chr12 36262713 36263107 -84994423 + MTC LTR MaLR 3 419 -2 3 861 24 0 0 0 chr12 36263838 36263862 -84993668 + AT_rich Low_complexity Low_complexity 1 24 0 3 861 758 11 0 11 chr12 36265165 36265257 -84992273 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 3 861 321 347 19 88 chr12 36266428 36266643 -84990887 + L1MDb LINE L1 637 836 -5573 3 861 6234 87 35 2 chr12 36269988 36270851 -84986679 - L1_Mus2 LINE L1 -1 6565 5675 3 861 1595 265 37 12 chr12 36271267 36271668 -84985862 - MTD LTR MaLR -8 411 1 3 861 4843 166 56 27 chr12 36271823 36272817 -84984713 - RLTR13D2 LTR ERVK 0 1023 1 3 861 341 290 50 68 chr12 36273504 36273726 -84983804 - L1MB7 LINE L1 -69 6115 5898 3 861 3483 63 37 7 chr12 36273726 36274187 -84983343 - MT2C_Mm LTR ERVL 0 475 1 3 861 285 79 0 0 chr12 36274187 36274225 -84983305 - MERVL-int LTR ERVL 0 5485 5448 3 861 327 153 26 53 chr12 36274225 36274301 -84983229 - ORR1A3-int LTR MaLR -1323 640 567 3 861 599 123 296 6 chr12 36274301 36274473 -84983057 - MERVL_2A-int LTR ERVL -132 5629 5408 3 861 197 147 0 0 chr12 36274510 36274544 -84982986 + MIRm SINE MIR 240 273 -3 3 861 891 0 0 0 chr12 36275059 36275158 -84982372 + (GAA)n Simple_repeat Simple_repeat 2 100 0 3 861 21 36 0 0 chr12 36275543 36275571 -84981959 + AT_rich Low_complexity Low_complexity 1 28 0 3 861 438 20 0 0 chr12 36275678 36275729 -84981801 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 861 226 300 111 47 chr12 36276734 36276968 -84980562 + L1MC LINE L1 5609 5857 -2025 3 861 8141 23 0 0 chr12 36278258 36279481 -84978049 - L1Md_T LINE L1 0 6582 5360 3 861 1007 286 47 94 chr12 36279548 36279602 -84977928 - MTD LTR MaLR -14 405 350 3 861 1038 87 7 0 chr12 36279602 36279740 -84977790 + B1_Mm SINE Alu 2 140 -7 3 861 279 0 0 0 chr12 36279742 36279773 -84977757 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 861 1007 286 47 94 chr12 36279773 36280140 -84977390 - MTD LTR MaLR -70 349 1 3 861 908 189 149 7 chr12 36280361 36280478 -84977052 + Lx9 LINE L1 7285 7414 -230 3 861 381 22 0 0 chr12 36280478 36280524 -84977006 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 861 908 189 149 7 chr12 36280524 36280714 -84976816 + Lx9 LINE L1 7415 7636 -8 3 861 709 262 7 0 chr12 36281909 36282050 -84975480 + RSINE1 SINE B4 11 152 -13 3 861 268 188 0 45 chr12 36282168 36282235 -84975295 + Lx9 LINE L1 7064 7127 -517 3 861 459 345 83 3 chr12 36282257 36282629 -84974901 + Lx9 LINE L1 7179 7580 -64 3 861 186 71 0 0 chr12 36282698 36282726 -84974804 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 3 861 1064 45 60 0 chr12 36282727 36282860 -84974670 - B1_Mus1 SINE Alu -6 142 2 3 861 241 349 101 0 chr12 36284031 36284140 -84973390 - MIR SINE MIR -133 129 10 3 861 509 94 0 12 chr12 36284216 36284302 -84973228 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 861 8095 31 2 1 chr12 36284510 36285474 -84972056 + L1Md_F3 LINE L1 5608 6572 -12 3 861 494 276 31 137 chr12 36286301 36286528 -84971002 + B4A SINE B4 90 292 0 3 861 402 333 36 96 chr12 36287970 36288062 -84969468 + ID SINE ID 2 83 -141 3 861 379 304 59 0 chr12 36288062 36288164 -84969366 + PB1D10 SINE Alu 3 110 -7 3 861 4986 46 2 3 chr12 36291116 36291732 -84965798 + L1Md_F3 LINE L1 5956 6570 -14 3 861 198 370 0 36 chr12 36291853 36291937 -84965593 - MER5B DNA MER1_type -20 158 78 3 861 333 0 0 0 chr12 36292436 36292473 -84965057 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 861 678 297 65 120 chr12 36293272 36293655 -84963875 + MTE2a LTR MaLR 3 364 -15 3 861 6889 93 26 3 chr12 36294011 36295030 -84962500 - L1_Mus4 LINE L1 -6 6630 5588 3 861 14960 109 15 13 chr12 36295035 36298125 -84959405 - L1VL4 LINE L1 -291 3268 173 3 861 211 68 0 83 chr12 36298861 36298909 -84958621 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 861 267 260 150 61 chr12 36299107 36299287 -84958243 + MIR SINE MIR 47 242 -20 3 861 237 299 144 0 chr12 36300690 36300787 -84956743 + MIRb SINE MIR 3 113 -155 3 861 985 281 53 12 chr12 36301865 36302207 -84955323 - ORR1E LTR MaLR 0 359 4 3 861 1142 254 119 3 chr12 36302213 36302355 -84955175 - ORR1E-int LTR MaLR -58 1522 1365 3 861 477 97 0 0 chr12 36302355 36302427 -84955103 + (ATG)n Simple_repeat Simple_repeat 2 73 0 3 861 2924 296 151 26 chr12 36302427 36303221 -84954309 - ORR1E-int LTR MaLR -216 1364 455 3 861 261 0 0 0 chr12 36303221 36303250 -84954280 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 861 2924 308 83 33 chr12 36303250 36303698 -84953832 - ORR1E-int LTR MaLR -1126 454 1 3 861 1323 294 20 26 chr12 36303702 36304054 -84953476 - ORR1E LTR MaLR -6 353 4 3 861 188 362 42 35 chr12 36304472 36304615 -84952915 + MIRb SINE MIR 96 239 -29 3 861 189 250 0 40 chr12 36304713 36304763 -84952767 - L2a LINE L2 -6 3420 3373 3 861 26 50 0 0 chr12 36305174 36305214 -84952316 + AT_rich Low_complexity Low_complexity 1 40 0 3 861 1124 70 0 0 chr12 36305464 36305607 -84951923 - B1_Mus2 SINE Alu -4 143 1 3 861 2023 195 61 10 chr12 36305609 36306003 -84951527 - MTD LTR MaLR -5 414 1 3 862 200 111 0 27 chr12 36307656 36307693 -84949837 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 3 862 235 0 57 0 chr12 36307695 36307730 -84949800 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 862 226 214 35 7 chr12 36307730 36307788 -84949742 + B4 SINE B4 1 54 -238 3 862 393 22 0 0 chr12 36307804 36307850 -84949680 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 862 353 39 20 0 chr12 36307885 36307936 -84949594 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 862 301 262 27 27 chr12 36308785 36308837 -84948693 + Lx9 LINE L1 7489 7540 -104 3 862 2879 145 29 12 chr12 36308837 36309326 -84948204 + Lx LINE L1 6143 6639 -15 3 862 189 0 0 0 chr12 36309326 36309347 -84948183 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 3 862 301 262 27 27 chr12 36309347 36309442 -84948088 + Lx9 LINE L1 7541 7636 -8 3 862 369 0 0 0 chr12 36309884 36309925 -84947605 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 862 29 47 0 0 chr12 36310383 36310426 -84947104 + AT_rich Low_complexity Low_complexity 1 43 0 3 862 306 238 226 0 chr12 36310470 36310554 -84946976 - B1F1 SINE Alu -44 105 3 4 862 816 264 92 66 chr12 36310685 36310989 -84946541 + MTEb LTR MaLR 68 379 0 4 862 1207 62 12 0 chr12 36312299 36312459 -84945071 + L1Md_F2 LINE L1 5425 5586 -297 4 862 7580 75 0 11 chr12 36312459 36313463 -84944067 + L1Md_F2 LINE L1 5587 6579 -3 4 862 587 230 21 7 chr12 36314459 36314599 -84942931 + B1_Mur1 SINE Alu 5 146 -3 4 862 283 327 17 78 chr12 36315062 36315178 -84942352 - PB1D10 SINE Alu -37 110 2 4 862 258 56 0 0 chr12 36315743 36315779 -84941751 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 862 1057 270 22 22 chr12 36316147 36316416 -84941114 - B4 SINE B4 -22 270 2 4 862 201 74 0 0 chr12 36317685 36317712 -84939818 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 862 1154 75 0 0 chr12 36319099 36319245 -84938285 + B1_Mus2 SINE Alu 2 147 0 4 862 198 0 0 0 chr12 36319248 36319270 -84938260 + (A)n Simple_repeat Simple_repeat 1 22 0 4 862 318 50 0 0 chr12 36320210 36320250 -84937280 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 4 862 1103 263 21 17 chr12 36320568 36320858 -84936672 + MTD LTR MaLR 1 291 -128 4 862 432 0 0 0 chr12 36321530 36321578 -84935952 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 862 329 373 105 17 chr12 36321603 36321775 -84935755 + L1MEg LINE L1 32 218 -5866 4 862 1253 223 14 158 chr12 36321837 36322274 -84935256 - ORR1D1 LTR MaLR 0 374 1 4 862 522 31 0 0 chr12 36323052 36323116 -84934414 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 862 229 347 42 10 chr12 36324119 36324215 -84933315 - MER3 DNA MER1_type -63 146 48 4 862 291 355 64 5 chr12 36325672 36325861 -84931669 + MIR3 SINE MIR 5 202 -6 4 862 243 0 0 0 chr12 36326058 36326085 -84931445 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 862 1249 184 44 22 chr12 36326464 36326736 -84930794 + Lx4A LINE L1 6781 7058 0 4 862 1076 117 21 0 chr12 36326741 36326929 -84930601 + MusHAL1 LINE L1 1976 2167 -545 4 862 5188 126 45 18 chr12 36326929 36327788 -84929742 - RLTR13D6 LTR ERVK -19 883 1 4 862 6863 112 1 51 chr12 36327788 36328999 -84928531 + L1_Mm LINE L1 3352 4501 -1382 4 862 700 149 14 0 chr12 36329507 36329648 -84927882 + GA-rich Low_complexity Low_complexity 3 145 0 4 862 28 0 0 0 chr12 36329817 36329845 -84927685 + AT_rich Low_complexity Low_complexity 1 28 0 4 862 413 316 15 15 chr12 36330913 36331048 -84926482 - B3 SINE B2 0 216 82 4 862 378 0 0 0 chr12 36331050 36331092 -84926438 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 862 254 312 25 0 chr12 36331102 36331182 -84926348 - RSINE1 SINE B4 0 165 84 4 862 300 320 9 55 chr12 36331253 36331362 -84926168 + LTR16E2 LTR ERVL 464 567 -1 4 862 21 0 0 0 chr12 36331786 36331807 -84925723 + AT_rich Low_complexity Low_complexity 1 21 0 4 862 2064 282 130 31 chr12 36332016 36333037 -84924493 + Lx8 LINE L1 6337 7458 -15 4 862 1400 249 60 52 chr12 36333517 36333885 -84923645 - MTE2a LTR MaLR -8 371 1 4 862 316 350 149 38 chr12 36333938 36334541 -84922989 - L2 LINE L2 -341 3078 2409 4 862 23 0 0 0 chr12 36334831 36334854 -84922676 + AT_rich Low_complexity Low_complexity 1 23 0 4 862 304 364 115 8 chr12 36335039 36335169 -84922361 + RSINE1 SINE B4 9 152 -13 4 862 369 0 0 0 chr12 36335172 36335213 -84922317 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 862 243 0 0 0 chr12 36335227 36335254 -84922276 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 862 23 0 0 0 chr12 36335263 36335286 -84922244 + AT_rich Low_complexity Low_complexity 1 23 0 4 862 580 299 20 70 chr12 36335474 36335675 -84921855 + B3A SINE B2 1 191 -7 4 862 360 308 52 150 chr12 36336172 36336405 -84921125 - MER106A DNA MER1_type -2 234 25 4 862 774 191 7 0 chr12 36337242 36337378 -84920152 + B1_Mur4 SINE Alu 9 145 -5 4 862 4592 151 6 5 chr12 36337461 36338527 -84919003 - Lx5 LINE L1 -888 6162 5090 4 862 1899 220 101 11 chr12 36338527 36338963 -84918567 + Lx5 LINE L1 6571 7045 -5 4 862 513 0 0 0 chr12 36338967 36339024 -84918506 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 4 862 360 226 141 23 chr12 36339817 36339984 -84917546 - MTD LTR MaLR 0 419 185 4 862 1759 274 63 48 chr12 36339964 36340734 -84916796 - MTC-int LTR MaLR -435 823 4 4 862 1279 244 17 7 chr12 36340826 36341115 -84916415 - MTD LTR MaLR -123 296 5 4 862 260 245 0 0 chr12 36342240 36342293 -84915237 + B4A SINE B4 3 55 -237 4 862 900 41 41 0 chr12 36342293 36342415 -84915115 - L1_Mus1 LINE L1 -820 5747 5621 4 862 1652 89 24 41 chr12 36342415 36342661 -84914869 + L1_Mus1 LINE L1 6326 6567 0 4 862 792 296 51 5 chr12 36342679 36342896 -84914634 + B4A SINE B4 43 269 -23 4 862 402 21 0 0 chr12 36342903 36342950 -84914580 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 862 357 24 0 0 chr12 36342950 36342991 -84914539 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 862 345 82 0 0 chr12 36343003 36343052 -84914478 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 862 256 333 60 0 chr12 36343234 36343402 -84914128 + L1MC3 LINE L1 5770 5947 -1838 4 862 1899 305 104 15 chr12 36343656 36344595 -84912935 + Lx8 LINE L1 6298 7320 -153 4 862 21 0 0 0 chr12 36344599 36344620 -84912910 + AT_rich Low_complexity Low_complexity 1 21 0 4 862 804 258 160 12 chr12 36344752 36345247 -84912283 + L1MC3 LINE L1 6181 6748 -1037 4 862 519 261 195 14 chr12 36345288 36345575 -84911955 + L1MC3 LINE L1 7056 7394 -391 4 862 554 335 56 10 chr12 36346219 36346415 -84911115 - B4A SINE B4 -11 281 77 4 862 493 311 72 49 chr12 36346512 36346735 -84910795 - MLT1E2 LTR MaLR -399 228 1 4 862 284 218 67 133 chr12 36346811 36346901 -84910629 - B1F SINE Alu -64 85 2 4 862 882 263 65 42 chr12 36346989 36347251 -84910279 + B4A SINE B4 24 291 -1 4 862 186 43 0 0 chr12 36347262 36347285 -84910245 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 862 25 0 0 0 chr12 36347477 36347502 -84910028 + AT_rich Low_complexity Low_complexity 1 25 0 4 862 22 0 0 0 chr12 36348402 36348424 -84909106 + AT_rich Low_complexity Low_complexity 1 22 0 4 862 409 205 77 0 chr12 36348528 36348645 -84908885 - Lx9 LINE L1 -168 7476 7351 4 862 1623 200 55 33 chr12 36348649 36349068 -84908462 + RMER1C Other Other 913 1340 -2 4 862 699 241 0 20 chr12 36349302 36349450 -84908080 - B1F SINE Alu -1 148 4 4 862 324 0 0 0 chr12 36351597 36351633 -84905897 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 862 345 377 86 31 chr12 36352387 36352609 -84904921 - MER119 DNA MER1_type -349 234 1 4 862 248 347 71 40 chr12 36352750 36352876 -84904654 - MIRc SINE MIR -137 131 2 4 862 649 319 17 38 chr12 36352961 36353248 -84904282 + B4A SINE B4 1 281 -11 4 862 26 30 0 0 chr12 36353447 36353480 -84904050 + AT_rich Low_complexity Low_complexity 1 33 0 4 862 236 370 14 43 chr12 36353597 36353738 -84903792 + L2a LINE L2 3290 3426 0 4 862 559 256 151 7 chr12 36353782 36354073 -84903457 - Lx7 LINE L1 0 7696 7364 4 862 411 173 0 0 chr12 36354094 36354204 -84903326 + GA-rich Low_complexity Low_complexity 1 110 0 4 862 3985 223 57 16 chr12 36354211 36355429 -84902101 - Lx7 LINE L1 -365 7331 6000 4 862 332 341 104 33 chr12 36356607 36356819 -84900711 + MIR SINE MIR 28 254 -8 4 862 1938 205 46 11 chr12 36357073 36357475 -84900055 - MTD LTR MaLR -13 406 1 4 862 183 42 0 0 chr12 36358399 36358423 -84899107 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 862 223 72 0 45 chr12 36359808 36359852 -84897678 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 4 862 1944 164 28 64 chr12 36360076 36360468 -84897062 - ORR1C1 LTR MaLR 0 378 1 4 862 341 223 49 89 chr12 36360521 36360644 -84896886 + B3A SINE B2 1 118 -80 4 862 277 352 61 34 chr12 36360644 36360668 -84896862 + ID_B1 SINE B4 1 151 -73 4 862 360 0 0 0 chr12 36361294 36361334 -84896196 + (A)n Simple_repeat Simple_repeat 1 40 0 4 862 228 35 0 0 chr12 36361380 36361409 -84896121 + (T)n Simple_repeat Simple_repeat 1 29 0 4 862 382 325 197 21 chr12 36361518 36361898 -84895632 + L1M5 LINE L1 4394 4840 -1306 4 862 593 135 32 0 chr12 36361903 36362029 -84895501 + (CA)n Simple_repeat Simple_repeat 1 130 0 4 862 3411 28 2 2 chr12 36362039 36362432 -84895098 - MTA_Mm LTR MaLR 0 396 4 4 862 405 0 0 0 chr12 36362433 36362478 -84895052 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 862 180 0 0 0 chr12 36362479 36362499 -84895031 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 862 206 128 26 0 chr12 36362655 36362694 -84894836 + (TAA)n Simple_repeat Simple_repeat 1 40 0 4 862 321 296 25 34 chr12 36362694 36362813 -84894717 + L1M5 LINE L1 4944 5061 -1085 4 862 264 286 16 6 chr12 36362815 36362900 -84894630 - B4 SINE B4 -202 90 7 4 862 776 292 5 5 chr12 36362950 36363153 -84894377 - ID_B1 SINE B4 -19 205 3 4 862 527 182 6 144 chr12 36363205 36363365 -84894165 - B1F2 SINE Alu -1 148 11 4 862 308 325 60 30 chr12 36363415 36363615 -84893915 + L1M5 LINE L1 5128 5333 -813 4 862 602 250 9 0 chr12 36363845 36363961 -84893569 + RSINE1 SINE B4 5 121 -44 4 862 453 144 22 22 chr12 36364157 36364292 -84893238 + GA-rich Low_complexity Low_complexity 2 136 0 4 862 251 219 0 30 chr12 36364597 36364663 -84892867 + L1ME3A LINE L1 6101 6164 -9 4 862 390 42 0 0 chr12 36365087 36365135 -84892395 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 862 934 297 113 4 chr12 36365138 36365395 -84892135 - B4A SINE B4 -6 286 2 4 862 2340 209 27 10 chr12 36367125 36367604 -84889926 + Lx5 LINE L1 6464 6950 -100 4 862 1240 177 5 9 chr12 36367625 36367836 -84889694 - URR1B DNA MER1_type -15 210 1 4 862 234 0 0 0 chr12 36367964 36367990 -84889540 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 862 636 210 68 97 chr12 36368036 36368242 -84889288 + Lx8 LINE L1 6652 6851 -622 5 862 534 237 59 8 chr12 36368261 36368380 -84889150 - B3A SINE B2 -11 187 63 5 862 463 283 69 0 chr12 36368420 36368579 -84888951 + Lx8 LINE L1 6861 7030 -443 5 862 1312 174 0 16 chr12 36368617 36368868 -84888662 - L1_Mur2 LINE L1 -364 5513 5267 5 862 1071 266 74 23 chr12 36368950 36369465 -84888065 - L1_Mur2 LINE L1 -1522 4358 3818 5 862 546 283 7 55 chr12 36369489 36369635 -84887895 + B3A SINE B2 60 198 0 5 862 29 28 0 0 chr12 36369715 36369751 -84887779 + AT_rich Low_complexity Low_complexity 1 36 0 5 862 253 322 38 28 chr12 36370275 36370430 -84887100 - MIRc SINE MIR -115 161 3 5 862 345 176 18 9 chr12 36370522 36370631 -84886899 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 862 203 337 41 0 chr12 36371062 36371160 -84886370 + L2a LINE L2 3109 3210 -216 5 862 216 186 0 0 chr12 36372007 36372066 -84885464 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 862 378 301 100 78 chr12 36372081 36372351 -84885179 - B4 SINE B4 -16 276 1 5 862 1135 81 0 0 chr12 36372816 36372964 -84884566 + B1_Mus1 SINE Alu 1 148 0 5 862 21 0 0 0 chr12 36372964 36372985 -84884545 + AT_rich Low_complexity Low_complexity 1 21 0 5 862 3139 278 108 28 chr12 36373449 36374628 -84882902 + Lx8 LINE L1 6060 7352 -121 5 862 3036 53 10 0 chr12 36374628 36375023 -84882507 + Lx3_Mus LINE L1 6607 7005 -4 5 862 3139 278 108 28 chr12 36375023 36375147 -84882383 + Lx8 LINE L1 7353 7468 -5 5 862 237 264 23 11 chr12 36375210 36375298 -84882232 + Lx8 LINE L1 7368 7456 -17 5 862 5521 153 62 13 chr12 36376210 36377233 -84880297 - Lx2B LINE L1 -5 6995 5923 5 862 6385 55 0 5 chr12 36377947 36378748 -84878782 - L1Md_F2 LINE L1 -12 6570 5774 5 862 225 256 152 64 chr12 36379112 36379283 -84878247 + MLT1J LTR MaLR 213 398 -114 5 862 207 0 0 0 chr12 36379943 36379966 -84877564 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 862 27 49 0 0 chr12 36380102 36380143 -84877387 + AT_rich Low_complexity Low_complexity 1 41 0 5 862 926 246 124 70 chr12 36380205 36380577 -84876953 + RMER4B LTR ERVK 78 469 -116 5 862 1142 110 6 11 chr12 36380565 36380582 -84876948 - B2_Mm1t SINE B2 -19 174 159 5 862 441 0 0 0 chr12 36380582 36380631 -84876899 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 5 862 1142 110 6 11 chr12 36380631 36380788 -84876742 - B2_Mm1t SINE B2 -35 158 1 5 862 347 280 66 33 chr12 36380788 36380897 -84876633 + RMER4B LTR ERVK 473 585 0 5 862 497 16 0 16 chr12 36381178 36381241 -84876289 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 862 229 315 196 48 chr12 36382545 36382775 -84874755 - MLT1L LTR MaLR -299 311 48 5 862 279 165 82 64 chr12 36383007 36383117 -84874413 + L1MD LINE L1 5220 5331 -815 5 862 298 316 21 79 chr12 36383413 36383587 -84873943 + B4 SINE B4 7 165 0 5 862 574 231 65 65 chr12 36383686 36383827 -84873703 + B3A SINE B2 9 155 -43 5 862 2049 161 34 0 chr12 36383827 36384182 -84873348 + ORR1B2 LTR MaLR 1 367 0 5 862 574 231 65 65 chr12 36384182 36384225 -84873305 + B3A SINE B2 156 193 -5 5 862 800 304 105 17 chr12 36384266 36384791 -84872739 + L1MD1 LINE L1 5369 5939 -303 5 862 21 36 0 0 chr12 36387031 36387059 -84870471 + AT_rich Low_complexity Low_complexity 1 28 0 5 862 22 0 0 0 chr12 36387767 36387789 -84869741 + AT_rich Low_complexity Low_complexity 1 22 0 5 862 255 79 0 0 chr12 36388098 36388136 -84869394 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 862 250 370 84 12 chr12 36388676 36388843 -84868687 - MIRb SINE MIR -15 253 75 5 862 616 262 39 5 chr12 36388961 36389269 -84868261 + L1MA8 LINE L1 5099 5424 -867 5 862 1109 291 71 10 chr12 36389307 36389713 -84867817 + Lx8 LINE L1 6244 6674 -799 5 862 7218 59 2 1 chr12 36389718 36390667 -84866863 - L1Md_F2 LINE L1 -13 6569 5620 5 862 1051 67 0 0 chr12 36390664 36390799 -84866731 + L1Md_F2 LINE L1 5486 5620 -263 5 862 405 268 111 0 chr12 36390797 36390950 -84866580 + Lx8 LINE L1 6666 6835 -638 5 862 567 259 95 19 chr12 36391281 36391545 -84865985 + L1MA8 LINE L1 5686 5969 -322 5 862 318 272 10 0 chr12 36391595 36391698 -84865832 + L1MA8 LINE L1 6133 6236 -55 5 862 617 289 66 0 chr12 36392393 36392649 -84864881 - L1MA4 LINE L1 -369 5931 5659 5 862 273 277 98 23 chr12 36392958 36393091 -84864439 - ORR1E LTR MaLR -216 143 1 5 862 680 280 143 4 chr12 36393518 36393769 -84863761 - B4A SINE B4 -6 286 1 5 862 1480 186 60 21 chr12 36394930 36395264 -84862266 + RMER17B LTR ERVK 612 958 0 5 862 193 274 20 0 chr12 36395705 36395756 -84861774 + MIRc SINE MIR 3 54 -214 5 862 241 273 132 83 chr12 36397157 36397301 -84860229 + MIR SINE MIR 95 245 -17 5 862 214 275 49 12 chr12 36397322 36397403 -84860127 + L2b LINE L2 3290 3373 -2 5 862 443 69 14 0 chr12 36398994 36399066 -84858464 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 862 23 0 0 0 chr12 36399832 36399855 -84857675 + AT_rich Low_complexity Low_complexity 1 23 0 5 862 2046 127 0 64 chr12 36400047 36400391 -84857139 + ORR1A3 LTR MaLR 5 326 0 5 862 839 197 0 26 chr12 36400659 36400810 -84856720 + B1F2 SINE Alu 1 147 -2 5 862 247 311 45 72 chr12 36400980 36401091 -84856439 - PB1D10 SINE Alu 0 117 10 5 862 749 313 64 41 chr12 36401559 36402163 -84855367 - L1MA4 LINE L1 -142 6149 5527 5 862 257 71 0 106 chr12 36402562 36402609 -84854921 + U2 snRNA snRNA 1 42 -146 5 862 200 389 32 21 chr12 36403132 36403321 -84854209 + L2a LINE L2 3236 3426 0 5 862 414 0 0 0 chr12 36405312 36405358 -84852172 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 862 774 316 57 0 chr12 36406540 36406733 -84850797 - ID_B1 SINE B4 -20 204 1 5 862 3473 186 52 6 chr12 36406949 36407626 -84849904 - Lx5 LINE L1 -1 7049 6342 5 862 288 0 0 0 chr12 36408188 36408220 -84849310 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 862 252 0 0 0 chr12 36408220 36408247 -84849283 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 862 734 249 149 32 chr12 36408290 36408539 -84848991 - B4 SINE B4 -14 278 1 5 862 226 392 10 0 chr12 36408554 36408656 -84848874 + MIRb SINE MIR 42 144 -124 5 862 1497 233 58 33 chr12 36409173 36409653 -84847877 + Lx8 LINE L1 6922 7413 -60 5 862 324 218 161 29 chr12 36409946 36410083 -84847447 + L1ME4a LINE L1 5960 6114 -10 5 862 193 351 42 11 chr12 36411432 36411527 -84846003 - L2a LINE L2 -1 3425 3328 5 862 7044 82 7 3 chr12 36412435 36413886 -84843644 + L1_Mus2 LINE L1 5107 6565 -1 5 862 808 134 0 0 chr12 36414240 36414359 -84843171 + MTC LTR MaLR 1 119 -302 5 862 6362 189 44 3 chr12 36414380 36415870 -84841660 - Lx5 LINE L1 0 7050 5485 5 862 1426 175 52 97 chr12 36415871 36416200 -84841330 + MTC LTR MaLR 108 421 0 5 862 242 299 38 38 chr12 36416344 36416424 -84841106 + BC1_Mm scRNA scRNA 1 80 -72 5 862 1186 225 56 105 chr12 36417209 36417640 -84839890 + MT2A LTR ERVL 1 543 -58 5 862 441 0 0 0 chr12 36417640 36417689 -84839841 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 862 576 234 31 8 chr12 36418099 36418228 -84839302 + B3 SINE B2 3 134 -82 5 862 282 29 0 0 chr12 36419713 36419748 -84837782 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 862 23 0 0 0 chr12 36420453 36420476 -84837054 + AT_rich Low_complexity Low_complexity 1 23 0 5 862 279 79 0 0 chr12 36420620 36420658 -84836872 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 862 6870 77 58 3 chr12 36421962 36423000 -84834530 + L1_Mus3 LINE L1 5529 6631 -7 5 862 372 262 130 8 chr12 36423415 36423538 -84833992 - RMER15 LTR ERVL -15 560 423 5 862 333 0 0 0 chr12 36423555 36423592 -84833938 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 5 862 302 273 13 0 chr12 36423797 36423874 -84833656 - Lx8 LINE L1 -359 7114 7037 5 862 1010 251 63 53 chr12 36423986 36424277 -84833253 - MTE2a LTR MaLR -14 405 77 5 862 8453 3 0 1 chr12 36424277 36425212 -84832318 + L1Md_A LINE L1 5649 6582 0 5 862 444 320 69 132 chr12 36425212 36425353 -84832177 - MTE2a LTR MaLR -312 107 1 5 862 254 317 16 62 chr12 36425443 36425571 -84831959 - LTR16E2 LTR ERVL -24 544 423 5 862 2755 284 104 29 chr12 36425675 36426151 -84831379 - Lx8 LINE L1 -98 7375 6880 5 862 1923 179 68 20 chr12 36426151 36426264 -84831266 - MTC LTR MaLR 0 421 312 5 862 207 0 0 0 chr12 36426264 36426287 -84831243 + (CAGGG)n Simple_repeat Simple_repeat 2 24 0 5 862 1923 179 68 20 chr12 36426287 36426571 -84830959 - MTC LTR MaLR -110 311 6 5 862 2755 284 104 29 chr12 36426571 36427240 -84830290 - Lx8 LINE L1 -594 6879 6144 5 862 501 395 63 5 chr12 36427328 36427534 -84829996 - LTR16E2 LTR ERVL -152 416 199 5 862 3416 23 8 0 chr12 36427987 36428380 -84829150 + MTA_Mm LTR MaLR 1 396 0 5 862 6423 107 42 22 chr12 36428380 36429575 -84827955 + MTA_Mm-int LTR MaLR 3 1258 0 5 862 3445 25 5 0 chr12 36429575 36429969 -84827561 + MTA_Mm LTR MaLR 1 396 0 5 862 261 83 0 0 chr12 36430285 36430321 -84827209 + (T)n Simple_repeat Simple_repeat 1 36 0 5 862 711 327 28 65 chr12 36430852 36431143 -84826387 + B4A SINE B4 7 286 -6 5 862 300 27 0 0 chr12 36431159 36431196 -84826334 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 862 2215 144 0 5 chr12 36432553 36432931 -84824599 - L1_Mur2 LINE L1 -663 5214 4839 5 862 2170 206 77 29 chr12 36432931 36433475 -84824055 + Lx5 LINE L1 6481 7050 0 5 862 341 245 38 38 chr12 36433528 36433634 -84823896 - L1MCa LINE L1 -4502 2006 1901 5 862 322 348 8 17 chr12 36433687 36433807 -84823723 - MER2B DNA MER2_type -2 334 216 5 862 1734 237 8 19 chr12 36434435 36434813 -84822717 - MTD LTR MaLR -28 391 18 5 862 1963 198 20 10 chr12 36436223 36436626 -84820904 - MTB_Mm LTR MaLR 0 407 1 5 862 316 258 12 19 chr12 36436871 36436970 -84820560 + ID4_ SINE ID 2 98 -54 5 862 288 0 0 0 chr12 36437308 36437340 -84820190 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 862 1023 140 0 0 chr12 36437340 36437511 -84820019 + (TA)n Simple_repeat Simple_repeat 2 172 0 5 862 1606 209 80 0 chr12 36437628 36437853 -84819677 + ORR1D1 LTR MaLR 1 228 -146 5 862 180 0 0 0 chr12 36437853 36437873 -84819657 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 5 862 1606 209 80 0 chr12 36437873 36437986 -84819544 + ORR1D1 LTR MaLR 229 365 -9 5 863 1202 55 0 0 chr12 36438043 36438188 -84819342 + B1_Mm SINE Alu 3 147 0 5 863 23 0 0 0 chr12 36438253 36438276 -84819254 + AT_rich Low_complexity Low_complexity 1 23 0 5 863 1807 241 54 35 chr12 36438495 36439010 -84818520 - RMER19C LTR ERVK 0 611 87 5 863 345 250 0 0 chr12 36440398 36440522 -84817008 + (TG)n Simple_repeat Simple_repeat 2 125 0 5 863 189 0 0 0 chr12 36440570 36440591 -84816939 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 6 863 4218 67 2 0 chr12 36441587 36442156 -84815374 + L1Md_F LINE L1 457 1026 -5493 6 863 668 274 32 25 chr12 36443200 36443485 -84814045 + L1M3 LINE L1 5504 5788 -503 6 863 23 33 0 0 chr12 36443485 36443515 -84814015 + AT_rich Low_complexity Low_complexity 1 30 0 6 863 370 235 85 18 chr12 36443572 36443774 -84813756 + Lx7 LINE L1 5754 5971 -1673 6 863 931 319 52 22 chr12 36443878 36444285 -84813245 + Lx8 LINE L1 6918 7336 -137 6 863 243 79 0 0 chr12 36444569 36444607 -84812923 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 6 863 526 241 51 0 chr12 36447150 36447287 -84810243 + L1MA4 LINE L1 4849 4992 -1151 6 863 1037 323 71 13 chr12 36447418 36448090 -84809440 + L1MA4 LINE L1 5312 6022 -278 6 863 528 16 0 0 chr12 36448463 36448524 -84809006 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 863 715 312 21 16 chr12 36448735 36448924 -84808606 - B4A SINE B4 -102 190 1 6 863 786 298 0 16 chr12 36449296 36449460 -84808070 + B3A SINE B2 7 167 -31 6 863 216 97 0 0 chr12 36449460 36449491 -84808039 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 863 786 298 0 16 chr12 36449491 36449520 -84808010 + B3A SINE B2 168 196 -2 6 863 26 0 0 0 chr12 36450323 36450349 -84807181 + AT_rich Low_complexity Low_complexity 1 26 0 6 863 827 274 143 56 chr12 36451685 36452327 -84805203 - L1MA10 LINE L1 -3 6331 5634 6 863 306 0 0 0 chr12 36452927 36452961 -84804569 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 863 520 317 78 0 chr12 36452961 36453103 -84804427 - B3A SINE B2 -44 154 2 6 863 180 327 16 127 chr12 36453136 36453262 -84804268 - MIR SINE MIR -78 130 19 6 863 2655 117 92 31 chr12 36453732 36454254 -84803276 - Lx2B LINE L1 -754 6246 5693 6 863 4723 122 39 16 chr12 36454270 36455011 -84802519 + Lx2B LINE L1 6236 6993 -7 6 863 556 136 135 8 chr12 36456802 36456928 -84800602 - Lx2 LINE L1 -5 6992 6851 6 863 302 214 54 105 chr12 36457118 36457242 -84800288 - MLT1A1 LTR MaLR -4 404 301 6 863 265 301 17 35 chr12 36458375 36458547 -84798983 + GA-rich Low_complexity Low_complexity 1 169 0 6 863 656 262 51 97 chr12 36460892 36460941 -84796589 + MTC LTR MaLR 28 67 -354 6 863 1100 78 7 7 chr12 36460941 36461096 -84796434 + L1_Mus1 LINE L1 6413 6567 0 6 863 656 253 82 72 chr12 36461096 36461370 -84796160 + MTC LTR MaLR 68 419 0 6 863 2556 166 16 50 chr12 36461391 36461501 -84796029 - Lx5 LINE L1 -919 6131 6029 6 863 420 20 0 0 chr12 36461501 36461550 -84795980 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 863 5696 150 19 9 chr12 36461550 36462693 -84794837 - Lx5 LINE L1 -1022 6028 4873 6 863 3559 214 66 12 chr12 36462695 36463524 -84794006 + Lx5 LINE L1 6142 7417 -43 6 863 535 342 53 62 chr12 36463685 36464006 -84793524 + MTEa LTR MaLR 19 336 -43 6 863 721 151 14 41 chr12 36464374 36464385 -84793145 - RMER10A LTR ERVL -20 422 412 6 863 414 0 0 0 chr12 36464385 36464431 -84793099 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 863 721 151 14 41 chr12 36464431 36464564 -84792966 - RMER10A LTR ERVL -31 411 282 6 863 631 177 14 19 chr12 36464721 36464892 -84792638 - RMER1B Other Other -5 1061 859 6 863 754 239 61 53 chr12 36464905 36464941 -84792589 - RMER10A LTR ERVL -179 263 223 6 863 233 29 29 0 chr12 36464941 36464975 -84792555 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 863 754 239 61 53 chr12 36464975 36465185 -84792345 - RMER10A LTR ERVL -220 222 15 6 863 30172 74 2 5 chr12 36465185 36470383 -84787147 + L1Md_F LINE L1 401 5586 -297 6 863 7889 57 3 0 chr12 36470383 36471376 -84786154 + L1Md_F2 LINE L1 5587 6582 0 6 863 30172 78 2 5 chr12 36471376 36471389 -84786141 + L1Md_F LINE L1 5587 5597 -286 6 863 459 0 0 0 chr12 36472407 36472458 -84785072 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 863 2487 302 64 50 chr12 36473276 36473955 -84783575 + Lx8 LINE L1 5740 6398 -1075 6 863 686 91 24 32 chr12 36473955 36474080 -84783450 + L1Md_F2 LINE L1 6459 6582 0 6 863 2487 310 70 53 chr12 36474080 36474885 -84782645 + Lx8 LINE L1 6399 7241 -232 6 863 26 0 0 0 chr12 36475224 36475250 -84782280 + AT_rich Low_complexity Low_complexity 1 26 0 6 863 483 87 0 0 chr12 36475845 36475914 -84781616 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 863 3941 110 107 0 chr12 36475953 36476610 -84780920 + L1Md_F LINE L1 296 1022 -5497 6 863 32033 103 15 10 chr12 36476635 36482231 -84775299 - L1Md_F LINE L1 -1 5882 273 6 863 708 150 0 0 chr12 36483066 36483193 -84774337 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 6 863 480 77 0 0 chr12 36484627 36484692 -84772838 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 863 239 337 40 63 chr12 36485035 36485209 -84772321 - MIR SINE MIR -28 234 65 6 863 2092 149 99 13 chr12 36485214 36485589 -84771941 + MTB_Mm LTR MaLR 1 407 0 6 863 4579 77 63 88 chr12 36486085 36486431 -84771099 + L1Md_Gf LINE L1 226 628 -5258 6 863 226 316 59 69 chr12 36486431 36486533 -84770997 + RLTR45 LTR ERVK 4 104 -378 6 863 4579 77 63 88 chr12 36486533 36487231 -84770299 + L1Md_Gf LINE L1 629 1444 -4442 6 863 24066 226 19 10 chr12 36487232 36493308 -84764222 + L1Md_T LINE L1 47 6183 -399 6 863 556 136 135 8 chr12 36498613 36498739 -84758791 - Lx2 LINE L1 -5 6992 6851 6 863 302 214 54 105 chr12 36498929 36499053 -84758477 - MLT1A1 LTR MaLR -4 404 301 6 863 265 301 17 35 chr12 36500186 36500358 -84757172 + GA-rich Low_complexity Low_complexity 1 169 0 1 863 651 262 51 97 chr12 36502703 36502752 -84754778 + MTC LTR MaLR 28 67 -354 2 863 1175 78 7 7 chr12 36502752 36502907 -84754623 + L1_Mus1 LINE L1 6413 6567 0 3 863 651 253 82 72 chr12 36502907 36503181 -84754349 + MTC LTR MaLR 68 419 0 2 863 2793 166 16 50 chr12 36503202 36503312 -84754218 - Lx5 LINE L1 -919 6131 6029 4 863 420 20 0 0 chr12 36503312 36503361 -84754169 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 863 6167 150 19 9 chr12 36503361 36504504 -84753026 - Lx5 LINE L1 -1022 6028 4873 4 863 3812 211 75 16 chr12 36504506 36505351 -84752179 + Lx5 LINE L1 6142 7453 -7 6 863 522 331 59 68 chr12 36505496 36505817 -84751713 + MTEa LTR MaLR 19 336 -43 7 863 724 151 14 41 chr12 36506185 36506196 -84751334 - RMER10A LTR ERVL -20 422 412 8 863 414 0 0 0 chr12 36506196 36506242 -84751288 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 863 724 151 14 41 chr12 36506242 36506375 -84751155 - RMER10A LTR ERVL -31 411 282 8 863 690 181 14 19 chr12 36506532 36506703 -84750827 - RMER1B Other Other 0 1066 859 1 863 767 235 39 56 chr12 36506729 36506752 -84750778 - RMER10A LTR ERVL -198 244 223 8 863 233 29 29 0 chr12 36506752 36506786 -84750744 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 863 767 235 39 56 chr12 36506786 36506996 -84750534 - RMER10A LTR ERVL -220 222 15 8 863 32533 74 2 4 chr12 36506996 36512192 -84745338 + L1Md_F LINE L1 401 5586 -297 1 863 8442 56 3 0 chr12 36512192 36513185 -84744345 + L1Md_F2 LINE L1 5587 6582 0 1 863 32533 78 2 5 chr12 36513185 36513201 -84744329 + L1Md_F LINE L1 5587 5600 -283 1 863 459 0 0 0 chr12 36514216 36514267 -84743263 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 863 2995 309 70 53 chr12 36515088 36515764 -84741766 + Lx8 LINE L1 5735 6398 -1075 1 863 742 91 24 32 chr12 36515764 36515889 -84741641 + L1Md_F2 LINE L1 6459 6582 0 1 863 2995 309 70 53 chr12 36515889 36516694 -84740836 + Lx8 LINE L1 6399 7241 -232 1 863 26 0 0 0 chr12 36517033 36517059 -84740471 + AT_rich Low_complexity Low_complexity 1 26 0 1 863 483 87 0 0 chr12 36517654 36517723 -84739807 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 863 4257 109 106 0 chr12 36517762 36518420 -84739110 + L1Md_F LINE L1 296 1023 -5496 1 863 34779 104 16 8 chr12 36518443 36524036 -84733494 - L1Md_F LINE L1 -1 5882 252 2 863 741 142 0 0 chr12 36524863 36524990 -84732540 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 2 863 480 77 0 0 chr12 36526424 36526489 -84731041 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 863 223 337 40 63 chr12 36526832 36527006 -84730524 - MIR SINE MIR -28 234 65 2 863 2268 149 99 13 chr12 36527011 36527386 -84730144 + MTB_Mm LTR MaLR 1 407 0 2 863 7012 73 1 19 chr12 36527882 36529021 -84728509 + L1Md_Gf LINE L1 226 1444 -4442 2 863 38750 16 3 10 chr12 36529022 36534809 -84722721 + L1Md_F3 LINE L1 1 5586 -297 2 863 9416 13 0 0 chr12 36534809 36535805 -84721725 + L1Md_A LINE L1 5587 6582 0 2 863 38750 48 3 22 chr12 36535805 36539966 -84717564 + L1Md_F3 LINE L1 1426 5595 -288 2 863 9042 29 0 3 chr12 36539966 36540965 -84716565 + L1Md_T LINE L1 5587 6582 0 2 863 35455 48 1 22 chr12 36540965 36541191 -84716339 + L1Md_F3 LINE L1 5587 5716 -167 2 863 3393 41 0 5 chr12 36541191 36541580 -84715950 - L1Md_F3 LINE L1 -1 6583 6197 2 863 35455 37 0 7 chr12 36541580 36542027 -84715503 + L1Md_F3 LINE L1 5717 6164 -420 2 863 653 169 43 23 chr12 36542027 36542232 -84715298 - MYSERV6-int LTR ERVK -985 7974 7856 2 863 534 238 60 55 chr12 36542232 36542414 -84715116 - RMER4A LTR ERVK -27 439 257 3 863 6377 285 53 33 chr12 36542415 36544141 -84713389 - MYSERV6-int LTR ERVK -6166 2793 1328 2 863 351 0 0 0 chr12 36544141 36544180 -84713350 + (GGA)n Simple_repeat Simple_repeat 1 39 0 3 863 6377 287 49 36 chr12 36544180 36545124 -84712406 - MYSERV6-int LTR ERVK -7632 1327 362 2 863 239 144 12 35 chr12 36545452 36545538 -84711992 + T-rich Low_complexity Low_complexity 2 85 0 3 863 240 35 0 0 chr12 36545892 36545921 -84711609 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 3 863 304 231 21 42 chr12 36546448 36546543 -84710987 + Lx7 LINE L1 7265 7357 -339 3 863 216 225 28 0 chr12 36546564 36546635 -84710895 + (TTTG)n Simple_repeat Simple_repeat 4 76 0 3 863 260 200 33 0 chr12 36546843 36546903 -84710627 - MLT1J-int LTR MaLR -656 731 670 3 863 630 294 104 35 chr12 36546976 36547177 -84710353 - B3A SINE B2 -1 215 1 3 863 8001 110 7 25 chr12 36547910 36549199 -84708331 - Lx3C LINE L1 -2 7007 5783 3 863 1190 58 7 0 chr12 36549199 36549338 -84708192 - B1_Mus1 SINE Alu -7 141 2 3 863 5889 191 32 80 chr12 36549338 36549497 -84708033 - Lx3C LINE L1 -1212 5797 5629 3 863 22 56 0 0 chr12 36550085 36550121 -84707409 + AT_rich Low_complexity Low_complexity 1 36 0 4 863 201 74 0 0 chr12 36550275 36550302 -84707228 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 863 528 279 114 18 chr12 36552465 36552746 -84704784 + L1MEc LINE L1 75 382 -6018 4 863 376 274 48 0 chr12 36553029 36553113 -84704417 + B3 SINE B2 109 196 -20 4 863 367 353 69 39 chr12 36553118 36553351 -84704179 - L2 LINE L2 -2574 845 606 4 863 471 18 0 0 chr12 36553354 36553410 -84704120 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 4 863 186 43 0 0 chr12 36554384 36554407 -84703123 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 863 1389 149 94 54 chr12 36554407 36554704 -84702826 - Lx4A LINE L1 -3 7055 6747 4 863 228 35 0 0 chr12 36555299 36555328 -84702202 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 863 441 0 0 0 chr12 36555533 36555582 -84701948 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 863 242 340 10 10 chr12 36555590 36555691 -84701839 + GA-rich Low_complexity Low_complexity 3 103 0 5 863 228 111 0 0 chr12 36555693 36555729 -84701801 + (CAGGA)n Simple_repeat Simple_repeat 2 37 0 5 863 275 203 34 0 chr12 36556474 36556533 -84700997 + B3A SINE B2 1 61 -137 5 863 360 0 0 0 chr12 36557128 36557168 -84700362 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 863 692 234 206 0 chr12 36560347 36560531 -84696999 + ID_B1 SINE B4 2 223 -1 5 863 278 111 56 0 chr12 36560537 36560591 -84696939 + GA-rich Low_complexity Low_complexity 4 60 0 5 863 213 248 160 46 chr12 36562622 36562753 -84694777 + L3 LINE CR1 4257 4402 -87 5 863 30 0 0 0 chr12 36563523 36563553 -84693977 + AT_rich Low_complexity Low_complexity 1 30 0 5 863 655 216 7 21 chr12 36564486 36564628 -84692902 + RSINE1 SINE B4 4 143 -22 5 863 499 146 34 23 chr12 36564629 36564804 -84692726 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 5 863 249 196 0 0 chr12 36564804 36564860 -84692670 + CT-rich Low_complexity Low_complexity 2 57 0 6 863 875 254 9 23 chr12 36566968 36567148 -84690382 - B3 SINE B2 -5 211 34 6 863 511 110 73 9 chr12 36567148 36567258 -84690272 - L1Md_F2 LINE L1 -2 6580 6464 6 863 875 254 9 23 chr12 36567258 36567291 -84690239 - B3 SINE B2 -183 33 1 6 863 226 164 0 35 chr12 36567704 36567761 -84689769 + CT-rich Low_complexity Low_complexity 5 59 0 6 863 23 54 0 0 chr12 36568156 36568193 -84689337 + AT_rich Low_complexity Low_complexity 1 37 0 6 863 236 120 20 0 chr12 36568252 36568302 -84689228 + (ATTG)n Simple_repeat Simple_repeat 4 54 0 6 863 529 115 21 0 chr12 36568303 36568441 -84689089 + (TAGA)n Simple_repeat Simple_repeat 1 140 0 6 863 1006 237 122 22 chr12 36568481 36568792 -84688738 + L1M5 LINE L1 2557 2898 -3248 6 863 248 212 29 29 chr12 36568806 36568874 -84688656 + L1ME3A LINE L1 5856 5923 -250 6 864 514 270 91 12 chr12 36569337 36569502 -84688028 + B3A SINE B2 5 182 -16 6 864 499 294 35 0 chr12 36569938 36570081 -84687449 - RSINE1 SINE B4 -16 149 2 7 864 332 324 73 13 chr12 36570548 36570698 -84686832 - B4A SINE B4 -8 284 126 7 864 214 148 37 0 chr12 36570755 36570809 -84686721 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 7 864 728 90 47 18 chr12 36570837 36571006 -84686524 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 7 864 850 300 73 94 chr12 36571009 36571638 -84685892 + Lx8 LINE L1 5127 5713 -167 7 864 186 103 0 0 chr12 36571638 36571667 -84685863 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 7 864 850 284 17 23 chr12 36571667 36571829 -84685701 + Lx8 LINE L1 5714 5907 -1566 7 864 2303 80 18 24 chr12 36571960 36572204 -84685326 - L1_Mus3 LINE L1 -6 6632 6394 7 864 3002 54 51 0 chr12 36572204 36572595 -84684935 + RLTR10A LTR ERVK 1 411 0 7 864 2303 80 18 24 chr12 36572595 36572683 -84684847 - L1_Mus3 LINE L1 -245 6393 6302 7 864 489 108 0 51 chr12 36572684 36572762 -84684768 + L1_Mm LINE L1 5033 5106 -777 7 864 414 55 0 0 chr12 36572760 36572815 -84684715 - L1_Mus3 LINE L1 -494 6072 6018 7 864 577 65 13 13 chr12 36572815 36572893 -84684637 + L1_Mus2 LINE L1 6307 6384 -182 7 864 1558 143 34 38 chr12 36572891 36573082 -84684448 + L1_Mm LINE L1 5113 5299 -584 7 864 1079 29 0 41 chr12 36573082 36573228 -84684302 + L1Md_F3 LINE L1 6441 6580 -4 8 864 1558 143 34 38 chr12 36573228 36573286 -84684244 + L1_Mm LINE L1 5300 5354 -529 7 864 207 0 0 0 chr12 36573286 36573309 -84684221 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 8 864 1558 143 34 38 chr12 36573309 36573349 -84684181 + L1_Mm LINE L1 5355 5401 -482 7 864 21 0 0 0 chr12 36573895 36573916 -84683614 + AT_rich Low_complexity Low_complexity 1 21 0 8 864 203 179 0 0 chr12 36574323 36574362 -84683168 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 8 864 565 269 166 12 chr12 36575147 36575316 -84682214 + B3A SINE B2 3 197 -1 8 864 629 256 141 46 chr12 36576055 36576317 -84681213 + B4A SINE B4 2 288 -4 8 864 527 188 0 8 chr12 36576323 36576441 -84681089 + (CA)n Simple_repeat Simple_repeat 2 118 0 8 864 584 235 57 129 chr12 36576457 36576637 -84680893 - B3A SINE B2 0 198 33 8 864 4788 126 114 11 chr12 36576637 36577503 -84680027 + RMER17B LTR ERVK 1 955 -3 8 864 584 235 57 129 chr12 36577503 36577532 -84679998 - B3A SINE B2 -166 32 4 8 864 396 59 0 0 chr12 36577916 36577967 -84679563 + (CTG)n Simple_repeat Simple_repeat 3 53 0 8 864 2515 170 55 106 chr12 36578137 36578318 -84679212 + RMER1C Other Other 753 926 -416 9 864 840 102 265 0 chr12 36578318 36578465 -84679065 + B2_Mm2 SINE B2 2 187 -8 9 864 2515 170 55 106 chr12 36578465 36578896 -84678634 + RMER1C Other Other 927 1334 -8 9 864 647 314 16 24 chr12 36580373 36580627 -84676903 + B4A SINE B4 41 292 0 9 864 4330 44 9 7 chr12 36580764 36581734 -84675796 + L1Md_Gf LINE L1 1 604 -5918 9 864 36049 35 0 0 chr12 36581754 36587246 -84670284 + L1Md_T LINE L1 1 5589 -297 9 864 9155 6 0 0 chr12 36587246 36588242 -84669288 + L1Md_T LINE L1 5590 6585 0 9 864 274 337 0 0 chr12 36588497 36588589 -84668941 - ORR1E LTR MaLR -263 96 5 9 864 5477 116 62 8 chr12 36588910 36589018 -84668512 - Lx2 LINE L1 -1 6996 6886 9 864 387 0 0 0 chr12 36589018 36589061 -84668469 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 864 5477 116 62 8 chr12 36589061 36589804 -84667726 - Lx2 LINE L1 -112 6885 6100 9 864 279 229 57 57 chr12 36589829 36589917 -84667613 - B4A SINE B4 -195 97 10 9 864 378 0 0 0 chr12 36590639 36590681 -84666849 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 864 38659 12 0 8 chr12 36590967 36595957 -84661573 + L1Md_A LINE L1 642 5586 -297 1 864 8893 18 0 0 chr12 36595957 36596953 -84660577 + L1Md_A LINE L1 5587 6582 0 1 864 244 330 22 11 chr12 36597011 36597103 -84660427 + B1_Mur2 SINE Alu 57 149 0 1 864 3071 88 5 0 chr12 36597865 36598263 -84659267 - MTB LTR MaLR 0 400 1 1 864 27 0 0 0 chr12 36598666 36598693 -84658837 + AT_rich Low_complexity Low_complexity 1 27 0 1 864 690 253 111 0 chr12 36598693 36598883 -84658647 - B3 SINE B2 -5 211 1 1 864 384 157 116 35 chr12 36599468 36599554 -84657976 - B3 SINE B2 0 216 124 1 864 579 198 24 80 chr12 36599575 36599759 -84657771 - ORR1D1 LTR MaLR -203 175 1 1 864 311 358 36 43 chr12 36599978 36600118 -84657412 + B4 SINE B4 13 151 -141 1 864 201 163 0 0 chr12 36600215 36600264 -84657266 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 864 1333 73 73 0 chr12 36601417 36601576 -84655954 + B2_Mm1t SINE B2 2 160 -33 1 864 207 0 0 0 chr12 36601576 36601599 -84655931 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 864 1333 73 73 0 chr12 36601599 36601618 -84655912 + B2_Mm1t SINE B2 161 192 -1 1 864 603 0 0 0 chr12 36601820 36601887 -84655643 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 1 864 41 0 0 0 chr12 36601948 36601989 -84655541 + AT_rich Low_complexity Low_complexity 1 41 0 1 864 518 309 78 23 chr12 36602430 36602757 -84654773 + Lx9 LINE L1 7148 7487 -157 1 864 257 294 0 12 chr12 36602992 36603078 -84654452 + Tigger7 DNA MER2_type 28 112 -2379 1 864 245 322 11 53 chr12 36603080 36603175 -84654355 + PB1D10 SINE Alu 7 97 -20 1 864 4711 62 24 0 chr12 36603197 36603793 -84653737 - L1_Mus1 LINE L1 -343 6223 5614 1 864 2436 78 3 0 chr12 36603793 36604112 -84653418 + L1_Mus1 LINE L1 6248 6567 0 1 864 44 20 0 0 chr12 36604122 36604173 -84653357 + AT_rich Low_complexity Low_complexity 1 51 0 1 864 1957 109 18 40 chr12 36604183 36604509 -84653021 - ORR1A1 LTR MaLR 0 346 28 1 864 861 308 106 46 chr12 36604517 36604950 -84652580 + Tigger7 DNA MER2_type 110 568 -1923 1 864 506 193 117 16 chr12 36606250 36606501 -84651029 - Lx9 LINE L1 -19 7625 7321 1 864 183 129 0 0 chr12 36607099 36607130 -84650400 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 864 643 312 7 20 chr12 36607663 36607867 -84649663 + B3A SINE B2 9 214 -2 1 864 680 296 39 28 chr12 36608073 36608355 -84649175 + B4A SINE B4 1 285 -7 1 864 918 98 0 0 chr12 36608376 36608529 -84649001 + (GA)n Simple_repeat Simple_repeat 2 154 0 1 864 378 170 0 0 chr12 36608544 36608638 -84648892 + GA-rich Low_complexity Low_complexity 2 95 0 1 864 986 101 0 7 chr12 36609825 36609975 -84647555 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 1 864 24 0 0 0 chr12 36610722 36610746 -84646784 + AT_rich Low_complexity Low_complexity 1 24 0 1 864 612 215 96 0 chr12 36611235 36611370 -84646160 - B1_Mur1 SINE Alu 0 149 2 1 864 333 47 0 0 chr12 36611543 36611586 -84645944 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 864 660 305 21 16 chr12 36612779 36612969 -84644561 + B3A SINE B2 8 198 0 1 864 956 251 9 28 chr12 36613295 36613512 -84644018 + B3 SINE B2 3 215 -1 1 864 231 337 0 67 chr12 36613558 36613647 -84643883 + PB1D7 SINE Alu 33 115 -5 1 864 888 173 0 0 chr12 36613841 36614020 -84643510 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 1 864 749 200 0 11 chr12 36614028 36614182 -84643348 + (TGGG)n Simple_repeat Simple_repeat 4 156 0 1 864 1097 102 6 0 chr12 36614182 36614348 -84643182 + (TAGA)n Simple_repeat Simple_repeat 3 169 0 1 864 749 200 0 11 chr12 36614348 36614375 -84643155 + (TGGG)n Simple_repeat Simple_repeat 1 27 0 1 864 959 128 5 0 chr12 36614404 36614625 -84642905 + (TAGA)n Simple_repeat Simple_repeat 1 222 0 1 864 369 0 0 0 chr12 36617133 36617174 -84640356 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 864 693 155 0 0 chr12 36617177 36617325 -84640205 + CT-rich Low_complexity Low_complexity 1 148 0 1 864 216 219 37 0 chr12 36617492 36617574 -84639956 + CT-rich Low_complexity Low_complexity 5 89 0 1 864 738 122 14 7 chr12 36618325 36618465 -84639065 + (TC)n Simple_repeat Simple_repeat 2 142 0 1 864 241 279 23 23 chr12 36618511 36618599 -84638931 + CT-rich Low_complexity Low_complexity 4 91 0 1 864 513 0 0 0 chr12 36619363 36619420 -84638110 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 864 825 124 0 0 chr12 36619591 36619720 -84637810 + (GAAA)n Simple_repeat Simple_repeat 4 132 0 1 864 243 0 0 0 chr12 36620140 36620167 -84637363 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 864 311 379 81 16 chr12 36620408 36620655 -84636875 + MLT1D LTR MaLR 44 306 -199 1 864 1003 290 81 53 chr12 36621323 36622141 -84635389 + L1MB5 LINE L1 5315 6159 -15 1 864 227 320 122 28 chr12 36623244 36623424 -84634106 - MIRb SINE MIR -56 212 16 1 864 911 259 58 66 chr12 36624243 36624648 -84632882 + MTE2a LTR MaLR 2 405 -14 1 864 1505 9 5 0 chr12 36625480 36625690 -84631840 + (CCCCAG)n Simple_repeat Simple_repeat 1 211 0 1 864 818 304 154 5 chr12 36625791 36626162 -84631368 + MER70B LTR ERVL 4 429 -149 1 864 899 189 7 0 chr12 36626668 36626811 -84630719 - B1_Mur4 SINE Alu -6 144 1 1 864 614 340 52 0 chr12 36627302 36627496 -84630034 + B4A SINE B4 7 210 -82 1 864 1829 212 34 77 chr12 36627591 36628058 -84629472 + RLTR20A LTR ERVK 1 448 -93 1 864 372 43 0 0 chr12 36628058 36628104 -84629426 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 864 1829 269 21 80 chr12 36628104 36628169 -84629361 + RLTR20A LTR ERVK 449 535 -33 1 864 228 216 0 0 chr12 36628196 36628247 -84629283 + (CATATA)n Simple_repeat Simple_repeat 1 51 0 1 864 268 308 87 0 chr12 36628986 36629090 -84628440 + L1ME1 LINE L1 6018 6130 -49 1 864 878 138 108 0 chr12 36629092 36629222 -84628308 - B1_Mur4 SINE Alu -6 144 1 1 864 38874 30 0 0 chr12 36629391 36635637 -84621893 - L1Md_T LINE L1 0 6585 243 1 864 222 259 0 53 chr12 36636074 36636131 -84621399 + PB1D9 SINE Alu 2 55 -65 1 864 222 330 0 28 chr12 36636505 36636611 -84620919 + CT-rich Low_complexity Low_complexity 2 104 0 1 864 561 30 0 0 chr12 36636704 36636771 -84620759 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 864 25 75 0 0 chr12 36636809 36636862 -84620668 + AT_rich Low_complexity Low_complexity 1 53 0 1 864 855 202 33 5 chr12 36637392 36637576 -84619954 + MTC LTR MaLR 229 417 -4 1 864 505 346 54 21 chr12 36637987 36638173 -84619357 + B4 SINE B4 1 192 -100 1 864 501 97 0 0 chr12 36638214 36638286 -84619244 + (CATA)n Simple_repeat Simple_repeat 3 74 0 1 864 1805 187 39 7 chr12 36638823 36639233 -84618297 + Lx6 LINE L1 1418 1840 -4040 1 864 1406 172 23 6 chr12 36639239 36639560 -84617970 + RLTR14 LTR ERV1 15 377 -5 1 864 26304 144 32 16 chr12 36639561 36642776 -84614754 + RLTR14-int LTR ERV1 17 3271 -2046 1 864 746 22 11 0 chr12 36642776 36642868 -84614662 + (GAAAA)n Simple_repeat Simple_repeat 2 94 0 1 864 26304 144 32 16 chr12 36642868 36643859 -84613671 + RLTR14-int LTR ERV1 3272 4293 -1024 1 864 3845 136 73 8 chr12 36643901 36644653 -84612877 + RLTR14-int LTR ERV1 4407 5207 -110 1 864 509 216 0 9 chr12 36644729 36644841 -84612689 + RLTR14 LTR ERV1 9 119 -263 1 864 1703 134 95 78 chr12 36644846 36645193 -84612337 - ORR1B2 LTR MaLR -11 356 4 1 864 3663 25 2 0 chr12 36645193 36645588 -84611942 - MTA_Mm LTR MaLR 0 396 1 1 864 1350 189 19 15 chr12 36645600 36645863 -84611667 + RLTR14 LTR ERV1 119 382 0 1 864 763 198 50 69 chr12 36645871 36646072 -84611458 + Lx6 LINE L1 1843 2056 -3824 1 864 459 0 0 0 chr12 36646072 36646123 -84611407 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 864 324 0 0 0 chr12 36646123 36646158 -84611372 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 864 763 198 50 69 chr12 36646158 36646216 -84611314 + Lx6 LINE L1 2057 2097 -3783 1 864 248 197 0 96 chr12 36646219 36646292 -84611238 + Charlie10 DNA MER1_type 2252 2317 -505 1 864 5423 173 126 18 chr12 36646298 36647539 -84609991 + Lx6 LINE L1 2254 3628 -2252 1 864 8119 188 70 51 chr12 36647541 36650315 -84607215 + Lx6 LINE L1 4103 6960 -500 1 864 2096 246 53 23 chr12 36650357 36651385 -84606145 - Lx6 LINE L1 -18 7442 6064 1 864 294 269 71 71 chr12 36651496 36651636 -84605894 + MER63D DNA AcHobo 8 147 -914 1 864 684 0 0 0 chr12 36651703 36651779 -84605751 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 864 24 0 0 0 chr12 36652566 36652590 -84604940 + AT_rich Low_complexity Low_complexity 1 24 0 1 864 736 192 251 17 chr12 36652602 36652777 -84604753 - B3 SINE B2 0 216 1 1 864 270 0 0 0 chr12 36654342 36654372 -84603158 + (A)n Simple_repeat Simple_repeat 1 30 0 1 864 393 188 0 0 chr12 36655071 36655151 -84602379 + A-rich Low_complexity Low_complexity 1 80 0 1 864 652 165 25 31 chr12 36655269 36655396 -84602134 - B1_Mur1 SINE Alu 0 149 1 1 864 543 256 0 72 chr12 36656372 36656511 -84601019 - RSINE1 SINE B4 -35 130 2 1 864 1099 218 34 10 chr12 36657396 36657604 -84599926 + B3 SINE B2 1 213 -3 1 864 449 342 0 65 chr12 36657849 36657915 -84599615 + L1MB8 LINE L1 5548 5604 -567 1 864 306 223 224 41 chr12 36657915 36658013 -84599517 + PB1D10 SINE Alu 2 117 0 1 864 449 294 0 61 chr12 36658013 36658186 -84599344 + L1MB8 LINE L1 5604 5771 -413 1 864 2189 156 89 3 chr12 36658193 36658573 -84598957 - MTC LTR MaLR 0 421 9 1 864 5671 174 128 22 chr12 36658581 36659493 -84598037 - MTC-int LTR MaLR 0 1258 251 1 864 294 95 0 0 chr12 36659493 36659535 -84597995 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 864 5671 174 128 22 chr12 36659535 36659759 -84597771 - MTC-int LTR MaLR -1008 250 1 1 864 473 252 50 7 chr12 36659989 36660129 -84597401 + L1MB8 LINE L1 6028 6173 -5 1 864 375 23 0 0 chr12 36660461 36660505 -84597025 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 864 648 301 177 26 chr12 36661182 36661492 -84596038 - ORR1E LTR MaLR -2 357 1 1 864 611 257 110 21 chr12 36662057 36662248 -84595282 + ID_B1 SINE B4 2 209 -15 1 864 415 270 33 33 chr12 36662248 36662401 -84595129 + B4A SINE B4 132 284 -8 1 864 445 80 13 13 chr12 36662474 36662550 -84594980 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 864 4080 162 46 11 chr12 36662550 36663292 -84594238 - Lx3C LINE L1 -122 6854 6087 1 864 15752 144 29 10 chr12 36663293 36665986 -84591544 - L1VL4 LINE L1 -16 5870 3128 1 864 8695 144 14 6 chr12 36665998 36667764 -84589766 - L1VL4 LINE L1 -3231 2655 876 1 864 435 38 0 0 chr12 36668289 36668342 -84589188 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1 864 531 226 0 0 chr12 36668634 36668767 -84588763 + CT-rich Low_complexity Low_complexity 3 135 0 1 864 319 235 73 85 chr12 36668777 36668884 -84588646 + L1M2 LINE L1 3206 3321 -2822 1 864 593 247 131 11 chr12 36668884 36669060 -84588470 + B3A SINE B2 2 198 0 1 864 319 235 73 85 chr12 36669060 36669212 -84588318 + L1M2 LINE L1 3322 3462 -2681 1 864 653 225 75 0 chr12 36669268 36669388 -84588142 + B1_Mur3 SINE Alu 10 138 -11 1 864 219 69 0 0 chr12 36669389 36669418 -84588112 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2 864 287 215 71 53 chr12 36669470 36669583 -84587947 - PB1D10 SINE Alu 0 117 3 2 864 277 299 80 0 chr12 36669600 36669737 -84587793 + L1M2 LINE L1 3560 3707 -2433 1 864 1352 126 66 109 chr12 36669737 36670040 -84587490 + ORR1B2 LTR MaLR 1 290 -77 2 864 180 0 0 0 chr12 36670040 36670060 -84587470 + (T)n Simple_repeat Simple_repeat 1 20 0 2 864 478 67 32 43 chr12 36670109 36670203 -84587327 - L1Md_F2 LINE L1 0 6582 6490 2 864 842 111 0 0 chr12 36670204 36670330 -84587200 + B1_Mus1 SINE Alu 23 148 0 2 864 288 20 57 38 chr12 36670330 36670383 -84587147 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 864 233 276 111 24 chr12 36670442 36670568 -84586962 + Cheshire DNA MER1_type 69 205 -2215 2 864 200 195 0 0 chr12 36671290 36671331 -84586199 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 864 892 150 0 67 chr12 36671333 36671483 -84586047 - B1_Mus1 SINE Alu -6 142 3 2 864 24 67 0 0 chr12 36671594 36671639 -84585891 + AT_rich Low_complexity Low_complexity 1 45 0 2 864 1898 117 39 59 chr12 36672004 36672373 -84585157 + RLTR31_Mm LTR ERVK 1 359 -194 2 864 1288 106 0 0 chr12 36675242 36675430 -84582100 - L1Md_F2 LINE L1 -451 6131 5944 2 864 3000 66 13 0 chr12 36675430 36675822 -84581708 + L1_Mus1 LINE L1 6171 6567 0 2 864 21 0 0 0 chr12 36676279 36676300 -84581230 + AT_rich Low_complexity Low_complexity 1 21 0 2 864 374 340 128 62 chr12 36676359 36676679 -84580851 + ORR1E LTR MaLR 1 341 -18 2 864 24 53 0 0 chr12 36677832 36677870 -84579660 + AT_rich Low_complexity Low_complexity 1 38 0 2 864 2108 197 47 50 chr12 36678389 36678967 -84578563 + Lx9 LINE L1 7063 7638 -6 2 864 7374 199 46 17 chr12 36678975 36680597 -84576933 - Lx7 LINE L1 0 7696 6028 2 864 875 265 22 22 chr12 36680600 36680824 -84576706 + B4 SINE B4 1 224 -68 2 864 229 118 0 0 chr12 36681804 36681838 -84575692 - MTE2a LTR MaLR -14 405 372 2 864 294 73 0 0 chr12 36681838 36681879 -84575651 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 2 864 1122 259 18 120 chr12 36681879 36682270 -84575260 - MTE2a LTR MaLR -28 351 1 2 864 421 291 10 155 chr12 36682270 36682368 -84575162 + MLT1C LTR MaLR 4 85 -382 2 864 4547 118 28 73 chr12 36682368 36683161 -84574369 + Lx2 LINE L1 6240 6996 -1 2 864 421 291 10 155 chr12 36683161 36683269 -84574261 + MLT1C LTR MaLR 86 180 -287 2 864 1381 233 49 8 chr12 36683272 36683661 -84573869 + L1_Mur3 LINE L1 38 442 -7270 2 864 715 168 0 0 chr12 36683706 36683825 -84573705 + Lx6 LINE L1 6534 6652 -808 2 864 911 159 48 18 chr12 36683841 36684007 -84573523 + B2_Mm2 SINE B2 5 175 -20 2 864 1920 213 38 84 chr12 36684029 36684639 -84572891 + Lx7 LINE L1 7107 7688 -8 2 864 1360 208 46 29 chr12 36684858 36685209 -84572321 + RMER1A Other Other 651 1007 -23 2 864 788 283 43 4 chr12 36685224 36685504 -84572026 + L1MB2 LINE L1 5874 6164 -7 2 864 1517 280 33 84 chr12 36685545 36685683 -84571847 + L1_Rod LINE L1 3798 3914 -1933 2 864 3721 58 0 13 chr12 36685683 36686153 -84571377 - L1_Mus1 LINE L1 -1 6566 6103 2 864 1517 280 33 84 chr12 36686153 36686884 -84570646 + L1_Rod LINE L1 3915 4623 -1224 2 864 6893 69 6 71 chr12 36686984 36688440 -84569090 - L1VL2 LINE L1 -1586 2029 672 2 864 2830 88 34 0 chr12 36688440 36688848 -84568682 - BGLII_Mus LTR ERVK 0 422 1 2 864 5403 67 11 20 chr12 36688848 36689260 -84568270 - L1VL2 LINE L1 -5664 671 271 2 864 21 36 0 0 chr12 36689261 36689289 -84568241 + AT_rich Low_complexity Low_complexity 1 28 0 2 864 469 231 90 8 chr12 36689317 36689439 -84568091 + MLT1C LTR MaLR 336 467 0 2 864 203 290 16 0 chr12 36689745 36689807 -84567723 - MIR SINE MIR -16 246 184 2 864 509 281 12 108 chr12 36690019 36690190 -84567340 - B3A SINE B2 -8 190 31 2 864 759 249 78 5 chr12 36690518 36690724 -84566806 - ID_B1 SINE B4 -3 221 1 2 864 200 176 81 12 chr12 36690841 36690927 -84566603 + (TA)n Simple_repeat Simple_repeat 1 92 0 2 864 5190 80 2 7 chr12 36691542 36692327 -84565203 - L1_Mus1 LINE L1 -712 5855 5075 2 864 1434 68 26 0 chr12 36692327 36692517 -84565013 + L1_Mus1 LINE L1 6372 6566 -1 2 864 4126 162 75 117 chr12 36694173 36695673 -84561857 + L1_Mur2 LINE L1 918 2354 -3523 2 864 1634 52 0 32 chr12 36695675 36695781 -84561749 + L1_Mus4 LINE L1 6128 6233 -403 2 864 1521 185 78 60 chr12 36695781 36696167 -84561363 - RLTR9C LTR ERVK 0 393 1 2 864 1634 52 0 32 chr12 36696167 36696280 -84561250 + L1_Mus4 LINE L1 6234 6340 -296 2 864 631 151 8 0 chr12 36696280 36696399 -84561131 + L1_Mus4 LINE L1 6507 6626 -10 2 864 701 210 137 4 chr12 36696417 36696666 -84560864 + L1_Mur2 LINE L1 2342 2623 -3254 2 864 1675 115 189 6 chr12 36696662 36696985 -84560545 + L1_Mur2 LINE L1 3985 4366 -1511 2 864 4050 216 40 0 chr12 36696997 36697794 -84559736 + Lx5 LINE L1 6211 7039 -11 2 864 1205 166 16 82 chr12 36697833 36698089 -84559441 - RLTR14 LTR ERV1 -141 241 3 2 864 1523 178 0 8 chr12 36698091 36698352 -84559178 - MT2A LTR ERVL -272 261 3 2 864 503 288 40 79 chr12 36699137 36699314 -84558216 + B4A SINE B4 6 175 -117 2 864 419 252 29 10 chr12 36700052 36700156 -84557374 + B1F SINE Alu 10 115 -34 2 865 600 261 148 23 chr12 36700352 36700769 -84556761 - Lx8 LINE L1 -1646 5827 5339 2 865 670 294 44 39 chr12 36700818 36700880 -84556650 - B3 SINE B2 -6 210 157 2 865 216 0 0 0 chr12 36700880 36700904 -84556626 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 865 315 0 0 0 chr12 36700904 36700938 -84556592 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 865 670 294 44 39 chr12 36700938 36701079 -84556451 - B3 SINE B2 -60 156 7 2 865 368 244 16 187 chr12 36701190 36701377 -84556153 + L1M4c LINE L1 1262 1416 -5217 2 865 430 307 120 36 chr12 36701404 36701756 -84555774 + L1M4c LINE L1 1542 1946 -4687 2 865 333 0 0 0 chr12 36701827 36701864 -84555666 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 865 201 74 0 0 chr12 36701864 36701891 -84555639 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 865 1503 203 111 11 chr12 36702547 36702925 -84554605 + MTD LTR MaLR 1 416 -3 2 865 22 0 0 0 chr12 36703566 36703588 -84553942 + AT_rich Low_complexity Low_complexity 1 22 0 2 865 362 222 0 0 chr12 36704270 36704342 -84553188 + MER103 DNA DNA 26 97 -69 2 865 247 345 14 38 chr12 36704843 36705001 -84552529 + MIR SINE MIR 3 153 -109 2 865 531 0 0 0 chr12 36705316 36705375 -84552155 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 865 483 277 181 0 chr12 36705377 36705543 -84551987 - ID_B1 SINE B4 -24 200 5 2 865 28 0 0 0 chr12 36706151 36706179 -84551351 + AT_rich Low_complexity Low_complexity 1 28 0 2 865 394 319 90 42 chr12 36706517 36706684 -84550846 + MER2 DNA MER2_type 143 317 -28 2 865 257 311 108 36 chr12 36706913 36707080 -84550450 - MIR SINE MIR -36 226 48 2 865 936 284 98 21 chr12 36707239 36707412 -84550118 + MTE2b LTR MaLR 18 205 -174 2 865 1341 41 0 0 chr12 36707412 36707584 -84549946 + (TC)n Simple_repeat Simple_repeat 1 172 0 2 865 936 284 98 21 chr12 36707584 36707737 -84549793 + MTE2b LTR MaLR 206 369 -10 2 865 198 103 0 0 chr12 36707756 36707785 -84549745 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 2 865 186 286 103 13 chr12 36707894 36707972 -84549558 + L2a LINE L2 3250 3334 -92 2 865 183 42 0 0 chr12 36708767 36708791 -84548739 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 865 447 19 0 0 chr12 36708802 36708854 -84548676 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 865 414 0 0 0 chr12 36708911 36708957 -84548573 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 865 317 288 0 14 chr12 36709300 36709374 -84548156 + ID4_ SINE ID 11 83 0 2 865 824 189 0 0 chr12 36710847 36710995 -84546535 + B1_Mus1 SINE Alu 1 148 0 2 865 360 0 0 0 chr12 36711147 36711187 -84546343 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 865 297 0 0 0 chr12 36711187 36711219 -84546311 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 865 354 258 56 8 chr12 36711231 36711356 -84546174 + L1MA4A LINE L1 5808 5938 -365 2 865 737 255 19 31 chr12 36711958 36712120 -84545410 + RSINE1 SINE B4 6 165 0 2 865 314 75 0 0 chr12 36712127 36712167 -84545363 + HAL1-3A_ME LINE L1 1976 2015 -843 2 865 539 271 38 0 chr12 36712460 36712593 -84544937 + ID_B1 SINE B4 87 224 0 2 865 596 14 14 0 chr12 36712847 36712920 -84544610 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 2 865 681 241 22 7 chr12 36713752 36713890 -84543640 + RSINE1 SINE B4 5 144 -21 2 865 246 32 0 0 chr12 36713898 36713929 -84543601 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 865 219 36 0 0 chr12 36713930 36713958 -84543572 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 865 771 234 64 12 chr12 36714908 36715081 -84542449 + B3A SINE B2 1 182 -16 2 865 219 69 0 0 chr12 36715081 36715110 -84542420 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2 865 315 113 0 0 chr12 36715265 36715318 -84542212 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 865 286 136 0 0 chr12 36715329 36715373 -84542157 - B3 SINE B2 -97 119 76 2 865 237 325 127 60 chr12 36716134 36716402 -84541128 + B4 SINE B4 3 288 -4 2 865 3658 79 14 16 chr12 36716957 36717473 -84540057 + L1_Mus3 LINE L1 6122 6636 -2 2 865 203 351 16 12 chr12 36717796 36717876 -84539654 - MIR SINE MIR -150 118 36 2 865 593 239 213 13 chr12 36718113 36718338 -84539192 - MLT1B LTR MaLR -36 354 85 2 865 225 360 0 0 chr12 36718374 36718424 -84539106 - ID SINE ID -146 78 29 2 865 228 326 84 0 chr12 36718422 36718517 -84539013 - MLT1B LTR MaLR -280 110 8 2 865 195 42 0 0 chr12 36719071 36719095 -84538435 + (A)n Simple_repeat Simple_repeat 1 24 0 2 865 23 54 0 0 chr12 36722817 36722854 -84534676 + AT_rich Low_complexity Low_complexity 1 37 0 2 865 296 287 73 0 chr12 36723227 36723363 -84534167 + L2 LINE L2 2779 2924 -495 2 865 288 0 0 0 chr12 36725103 36725135 -84532395 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 865 184 178 111 0 chr12 36725654 36725699 -84531831 + L2b LINE L2 3326 3375 0 2 865 267 31 0 0 chr12 36725847 36725879 -84531651 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 865 309 269 46 0 chr12 36726068 36726176 -84531354 + MER5B DNA MER1_type 20 132 -46 3 865 256 217 0 0 chr12 36726468 36726514 -84531016 - ID4 SINE ID -14 69 24 3 865 495 179 41 7 chr12 36726521 36726653 -84530877 + (TA)n Simple_repeat Simple_repeat 2 138 0 3 865 489 110 0 0 chr12 36726653 36726726 -84530804 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 865 495 179 41 7 chr12 36726726 36726739 -84530791 + (TA)n Simple_repeat Simple_repeat 1 13 0 3 865 879 182 0 0 chr12 36726739 36726909 -84530621 + (CA)n Simple_repeat Simple_repeat 2 171 0 3 865 692 238 7 0 chr12 36727032 36727183 -84530347 - ID_B1 SINE B4 -1 223 72 3 865 602 60 12 0 chr12 36727377 36727460 -84530070 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 3 865 215 185 111 0 chr12 36727460 36727514 -84530016 + ID SINE ID 2 61 -163 3 865 582 286 0 0 chr12 36727530 36727677 -84529853 + B1F SINE Alu 1 147 -2 3 865 183 42 0 0 chr12 36727959 36727983 -84529547 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 865 223 179 0 0 chr12 36728844 36728883 -84528647 + GA-rich Low_complexity Low_complexity 2 40 0 3 865 613 218 89 0 chr12 36729622 36729746 -84527784 + B1_Mur1 SINE Alu 1 135 -14 3 865 1092 210 152 12 chr12 36730037 36730154 -84527376 - ORR1D1 LTR MaLR 0 374 229 3 865 212 0 36 0 chr12 36730154 36730182 -84527348 + (CAGG)n Simple_repeat Simple_repeat 2 30 0 3 865 1092 210 152 12 chr12 36730182 36730387 -84527143 - ORR1D1 LTR MaLR -146 228 7 3 865 290 291 106 10 chr12 36730718 36730822 -84526708 + PB1D7 SINE Alu 1 114 -6 3 865 21 0 0 0 chr12 36730828 36730849 -84526681 + AT_rich Low_complexity Low_complexity 1 21 0 3 865 213 39 0 0 chr12 36730910 36730936 -84526594 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 865 387 0 0 0 chr12 36731112 36731155 -84526375 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 865 710 269 7 0 chr12 36731903 36732052 -84525478 + RSINE1 SINE B4 4 153 -12 3 865 270 0 0 0 chr12 36732066 36732096 -84525434 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 865 722 209 49 147 chr12 36732105 36732329 -84525201 + B3 SINE B2 15 216 0 3 865 1112 286 82 42 chr12 36732687 36733200 -84524330 + L1MB3 LINE L1 5542 6074 -109 3 865 1291 218 71 14 chr12 36733200 36733554 -84523976 + ORR1D1 LTR MaLR 1 374 0 3 865 1112 286 82 42 chr12 36733554 36733641 -84523889 + L1MB3 LINE L1 6075 6165 -18 3 865 570 29 0 0 chr12 36733644 36733712 -84523818 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 865 875 167 14 0 chr12 36733728 36733866 -84523664 - B1_Mur3 SINE Alu -7 142 3 3 865 476 236 32 8 chr12 36733908 36734032 -84523498 + B1_Mur4 SINE Alu 24 150 0 3 865 369 231 16 71 chr12 36734601 36734727 -84522803 + B3A SINE B2 80 198 0 3 865 1944 288 62 12 chr12 36735908 36736582 -84520948 + MYSERV16_I-int LTR ERVK 509 1216 -7743 3 865 10557 175 76 36 chr12 36736824 36737643 -84519887 + MYSERV16_I-int LTR ERVK 1 794 -1532 3 865 522 0 0 0 chr12 36737643 36737701 -84519829 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 865 10557 165 77 38 chr12 36737701 36739197 -84518333 + MYSERV16_I-int LTR ERVK 795 2326 0 3 865 1673 175 107 8 chr12 36739197 36739588 -84517942 + BGLII_B LTR ERVK 1 430 -11 3 865 297 275 25 0 chr12 36739592 36739672 -84517858 + B1F SINE Alu 62 143 -6 3 865 225 0 0 0 chr12 36739746 36739771 -84517759 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 865 654 65 0 0 chr12 36739771 36739862 -84517668 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 865 395 286 32 25 chr12 36739870 36740028 -84517502 - B3A SINE B2 -39 159 1 3 865 482 250 52 0 chr12 36740613 36740729 -84516801 + RSINE1 SINE B4 3 124 -41 3 865 189 0 0 0 chr12 36740729 36740750 -84516780 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 865 1649 36 0 0 chr12 36740778 36740970 -84516560 + B2_Mm1t SINE B2 2 193 0 3 865 1020 131 0 0 chr12 36741302 36741447 -84516083 + B1_Mur4 SINE Alu 4 148 -2 3 865 343 243 87 35 chr12 36742915 36743030 -84514500 - B3A SINE B2 -24 174 54 3 865 482 204 19 0 chr12 36743205 36743308 -84514222 - PB1D9 SINE Alu -3 117 13 3 865 525 261 13 47 chr12 36743472 36743621 -84513909 + RSINE1 SINE B4 15 158 -7 3 865 287 360 14 35 chr12 36743657 36743801 -84513729 + RSINE1 SINE B4 8 148 -17 3 865 22 0 0 0 chr12 36744111 36744133 -84513397 + AT_rich Low_complexity Low_complexity 1 22 0 3 865 22 0 0 0 chr12 36744423 36744445 -84513085 + AT_rich Low_complexity Low_complexity 1 22 0 3 865 495 291 53 24 chr12 36744453 36744661 -84512869 + B3 SINE B2 3 216 0 3 865 21 0 0 0 chr12 36744939 36744960 -84512570 + AT_rich Low_complexity Low_complexity 1 21 0 3 865 567 221 128 51 chr12 36745113 36745230 -84512300 - Lx9 LINE L1 0 7644 7513 3 865 1157 62 7 0 chr12 36745230 36745376 -84512154 + B1_Mus1 SINE Alu 2 148 0 3 865 567 221 128 51 chr12 36745376 36745414 -84512116 - Lx9 LINE L1 -132 7512 7468 3 865 360 43 0 0 chr12 36745414 36745460 -84512070 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 865 567 221 128 51 chr12 36745460 36745599 -84511931 - Lx9 LINE L1 -177 7467 7326 3 865 749 122 89 30 chr12 36745603 36745738 -84511792 - B1_Mur4 SINE Alu -6 144 2 3 865 2380 148 112 17 chr12 36746142 36746483 -84511047 + RMER4B LTR ERVK 67 426 -159 3 865 1347 182 24 159 chr12 36746483 36746941 -84510589 - RMER10B LTR ERVL 0 398 3 3 865 2380 148 112 17 chr12 36746941 36747073 -84510457 + RMER4B LTR ERVK 427 584 -1 3 865 1833 175 18 62 chr12 36747467 36747676 -84509854 + ORR1C2 LTR MaLR 1 189 -195 3 865 441 0 0 0 chr12 36747676 36747725 -84509805 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 865 1833 175 18 62 chr12 36747725 36747899 -84509631 + ORR1C2 LTR MaLR 190 367 -17 3 865 455 279 18 7 chr12 36747935 36748083 -84509447 + MLT1E LTR MaLR 399 550 -130 3 865 254 250 0 15 chr12 36748086 36748151 -84509379 + MTE2a LTR MaLR 1 64 -315 3 865 297 0 0 0 chr12 36748185 36748218 -84509312 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 3 865 883 201 0 0 chr12 36749146 36749295 -84508235 + B1_Mur2 SINE Alu 1 149 0 3 865 550 245 48 41 chr12 36749516 36749661 -84507869 - RSINE1 SINE B4 0 165 20 3 865 311 286 52 26 chr12 36749843 36749958 -84507572 + PB1D7 SINE Alu 3 120 0 3 865 378 143 0 0 chr12 36749969 36750032 -84507498 + (GGGA)n Simple_repeat Simple_repeat 1 63 0 3 865 379 268 266 10 chr12 36750801 36751008 -84506522 - MER2 DNA MER2_type -85 260 1 3 865 186 43 0 0 chr12 36751719 36751742 -84505788 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 865 195 42 0 0 chr12 36752175 36752199 -84505331 + (A)n Simple_repeat Simple_repeat 1 24 0 3 865 577 214 0 12 chr12 36752600 36752761 -84504769 + (TA)n Simple_repeat Simple_repeat 2 160 0 3 865 405 235 125 8 chr12 36752791 36752911 -84504619 - MLT2C2 LTR ERVL -296 168 35 3 865 1102 62 0 82 chr12 36753179 36753338 -84504192 - B1_Mus2 SINE Alu 0 147 2 3 865 311 216 67 13 chr12 36753723 36753798 -84503732 - B1F1 SINE Alu -60 89 11 3 865 282 205 0 60 chr12 36753826 36753909 -84503621 - MER58B DNA MER1_type -183 158 81 3 865 538 299 40 27 chr12 36753925 36754073 -84503457 + RSINE1 SINE B4 13 162 -3 3 865 250 329 50 12 chr12 36754183 36754263 -84503267 - MER58B DNA MER1_type -258 83 1 3 865 469 304 176 66 chr12 36754546 36754661 -84502869 + MLT1D LTR MaLR 77 190 -315 3 865 1328 81 38 0 chr12 36754661 36754846 -84502684 + B2_Mm1t SINE B2 2 193 0 3 865 469 304 176 66 chr12 36754846 36755110 -84502420 + MLT1D LTR MaLR 191 498 -7 3 865 433 259 0 27 chr12 36755288 36755399 -84502131 + B1F2 SINE Alu 42 149 0 3 865 871 204 39 24 chr12 36755407 36755613 -84501917 + B3 SINE B2 1 209 -7 3 865 257 221 145 51 chr12 36755646 36755784 -84501746 + RSINE1 SINE B4 11 161 -4 3 865 243 0 0 0 chr12 36756282 36756309 -84501221 + (G)n Simple_repeat Simple_repeat 1 27 0 3 865 450 160 105 11 chr12 36756494 36756589 -84500941 + B1_Mus2 SINE Alu 5 108 -39 3 865 464 292 68 0 chr12 36756709 36756856 -84500674 + RSINE1 SINE B4 3 159 -6 3 865 28 29 0 0 chr12 36756858 36756893 -84500637 + AT_rich Low_complexity Low_complexity 1 35 0 3 865 885 202 119 5 chr12 36758108 36758302 -84499228 + B3 SINE B2 1 216 0 3 865 381 237 23 120 chr12 36758320 36758536 -84498994 + B3 SINE B2 1 216 0 3 865 34 18 0 50 chr12 36758672 36758732 -84498798 + AT_rich Low_complexity Low_complexity 1 57 0 3 865 323 225 61 35 chr12 36759551 36759666 -84497864 + MLT1A1 LTR MaLR 291 408 0 3 865 1553 198 97 31 chr12 36759684 36760033 -84497497 - ORR1D1 LTR MaLR -2 372 1 3 865 3327 46 2 0 chr12 36760484 36760879 -84496651 - MTA_Mm LTR MaLR 0 396 1 3 865 486 286 0 0 chr12 36760912 36761031 -84496499 + B1F2 SINE Alu 25 143 -6 3 865 911 218 66 5 chr12 36761051 36761249 -84496281 + B3 SINE B2 7 216 0 3 865 255 301 55 0 chr12 36761270 36761343 -84496187 - ORR1D1 LTR MaLR -185 189 113 3 865 761 254 10 16 chr12 36761342 36761534 -84495996 + B3 SINE B2 13 203 -13 3 865 21 36 0 0 chr12 36761553 36761581 -84495949 + AT_rich Low_complexity Low_complexity 1 28 0 3 865 657 208 14 27 chr12 36761606 36761754 -84495776 + B1_Mur1 SINE Alu 2 147 -2 3 865 21 0 0 0 chr12 36762002 36762023 -84495507 + AT_rich Low_complexity Low_complexity 1 21 0 3 865 334 318 27 0 chr12 36762594 36762704 -84494826 + ID_B1 SINE B4 5 117 -107 3 865 240 333 64 37 chr12 36762709 36763036 -84494494 + L2 LINE L2 2045 2380 -1039 3 865 236 369 66 22 chr12 36763109 36763292 -84494238 + L2 LINE L2 2514 2704 -715 3 865 356 98 131 0 chr12 36763588 36763649 -84493881 - B2_Mm2 SINE B2 -124 71 3 3 865 647 185 72 24 chr12 36763667 36763833 -84493697 - RMER4B LTR ERVK -411 174 1 3 865 261 280 13 0 chr12 36763833 36763896 -84493634 - B1_Mur4 SINE Alu -85 65 2 3 865 21 0 0 0 chr12 36764342 36764363 -84493167 + AT_rich Low_complexity Low_complexity 1 21 0 3 865 367 261 63 0 chr12 36764385 36764496 -84493034 - RSINE1 SINE B4 -3 162 45 3 865 816 241 75 5 chr12 36764815 36765015 -84492515 + B3 SINE B2 1 214 -2 4 865 1134 41 0 64 chr12 36765468 36765624 -84491906 - B1_Mus2 SINE Alu -1 146 1 4 865 299 121 118 29 chr12 36765639 36765707 -84491823 + B1F SINE Alu 75 148 -1 4 865 279 0 0 0 chr12 36765926 36765957 -84491573 + (TA)n Simple_repeat Simple_repeat 1 31 0 4 865 24 0 0 0 chr12 36768178 36768202 -84489328 + AT_rich Low_complexity Low_complexity 1 24 0 4 865 21 0 0 0 chr12 36769104 36769125 -84488405 + GC_rich Low_complexity Low_complexity 1 21 0 4 865 219 69 0 0 chr12 36769225 36769254 -84488276 + (GGA)n Simple_repeat Simple_repeat 1 29 0 4 865 785 176 147 11 chr12 36770044 36770234 -84487296 + B3 SINE B2 1 216 0 4 865 215 73 73 0 chr12 36770310 36770365 -84487165 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 4 865 574 221 0 0 chr12 36770600 36770704 -84486826 + PB1D9 SINE Alu 8 111 -9 4 865 321 340 10 0 chr12 36770911 36771014 -84486516 + PB1D10 SINE Alu 1 104 -13 4 865 1363 39 0 22 chr12 36771016 36771200 -84486330 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 865 543 264 40 63 chr12 36771354 36771528 -84486002 + B4 SINE B4 116 285 -7 4 865 352 268 26 35 chr12 36771964 36772080 -84485450 - PB1D10 SINE Alu -2 115 1 4 865 227 256 14 170 chr12 36772371 36772512 -84485018 + MLT1A LTR MaLR 2 120 -254 4 865 2858 269 48 32 chr12 36772565 36773463 -84484067 + Lx8 LINE L1 6412 7323 -150 4 865 218 32 32 0 chr12 36773472 36773503 -84484027 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 865 525 180 12 23 chr12 36773618 36773789 -84483741 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 865 26 0 0 0 chr12 36774218 36774244 -84483286 + AT_rich Low_complexity Low_complexity 1 26 0 4 865 573 261 65 7 chr12 36774367 36774521 -84483009 + RSINE1 SINE B4 3 165 0 4 865 1876 124 80 10 chr12 36774524 36774826 -84482704 + ORR1A3 LTR MaLR 1 323 -3 4 865 198 0 0 0 chr12 36774826 36774848 -84482682 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 865 444 314 8 8 chr12 36775417 36775542 -84481988 - B3A SINE B2 -11 187 63 4 865 556 232 16 23 chr12 36775618 36775746 -84481784 - B3A SINE B2 -70 128 2 4 865 972 41 0 0 chr12 36775942 36776063 -84481467 + (TTCC)n Simple_repeat Simple_repeat 4 124 0 4 865 369 62 0 0 chr12 36776609 36776657 -84480873 + (CATA)n Simple_repeat Simple_repeat 2 49 0 4 865 190 179 36 0 chr12 36776657 36776713 -84480817 + CT-rich Low_complexity Low_complexity 4 61 0 4 865 471 234 86 0 chr12 36776723 36776851 -84480679 - B1_Mur1 SINE Alu -8 141 3 4 865 639 296 40 11 chr12 36777002 36777176 -84480354 + ID_B1 SINE B4 1 179 -45 4 865 23 33 0 0 chr12 36777299 36777329 -84480201 + AT_rich Low_complexity Low_complexity 1 30 0 4 865 3447 43 0 0 chr12 36777344 36777740 -84479790 + MTA_Mm LTR MaLR 1 396 0 4 865 234 128 0 0 chr12 36779127 36779166 -84478364 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 865 269 242 145 0 chr12 36779166 36779228 -84478302 - ID4_ SINE ID -10 73 3 4 865 237 307 158 29 chr12 36779327 36779498 -84478032 - MLT1H1 LTR MaLR -8 547 355 4 865 210 48 60 60 chr12 36780873 36780885 -84476645 + A-rich Low_complexity Low_complexity 2 13 0 4 865 1615 41 0 20 chr12 36780885 36781082 -84476448 + B2_Mm1a SINE B2 1 193 0 4 865 210 48 60 60 chr12 36781082 36781136 -84476394 + A-rich Low_complexity Low_complexity 14 68 0 4 865 326 294 0 0 chr12 36781308 36781393 -84476137 - PB1D10 SINE Alu 0 117 33 4 865 405 0 0 0 chr12 36781881 36781926 -84475604 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 865 1881 119 149 113 chr12 36781934 36782245 -84475285 - RLTR23 LTR ERV1 0 430 101 4 865 495 0 0 0 chr12 36782245 36782300 -84475230 + (TTTTG)n Simple_repeat Simple_repeat 5 59 0 4 865 1881 119 149 113 chr12 36782300 36782403 -84475127 - RLTR23 LTR ERV1 -330 100 1 4 865 267 31 0 0 chr12 36783027 36783059 -84474471 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 865 478 229 64 0 chr12 36783059 36783168 -84474362 - PB1D10 SINE Alu -1 116 1 4 865 483 344 44 63 chr12 36783313 36783759 -84473771 + MER77 LTR ERVL 16 503 -104 4 865 2718 284 25 62 chr12 36783767 36783930 -84473600 - Lx8 LINE L1 -3 7470 7334 4 865 731 238 7 0 chr12 36783930 36784077 -84473453 - B1_Mur1 SINE Alu -1 148 1 4 865 2718 284 25 62 chr12 36784077 36784834 -84472696 - Lx8 LINE L1 -140 7333 6584 4 865 312 229 0 0 chr12 36785043 36785126 -84472404 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 865 1091 218 67 97 chr12 36785126 36785582 -84471948 - MT2A LTR ERVL -64 537 1 4 865 249 33 0 0 chr12 36785593 36785623 -84471907 + (TGG)n Simple_repeat Simple_repeat 3 32 0 4 865 527 279 21 14 chr12 36785630 36785772 -84471758 - B1F1 SINE Alu -2 147 5 4 865 315 287 6 128 chr12 36786978 36787150 -84470380 + MER67C LTR ERV1 61 211 -500 4 865 457 242 124 0 chr12 36787246 36787407 -84470123 + MER67C LTR ERV1 529 709 -2 4 865 1008 40 0 0 chr12 36787542 36787667 -84469863 + (CA)n Simple_repeat Simple_repeat 2 126 0 4 865 198 0 0 0 chr12 36788630 36788652 -84468878 + (T)n Simple_repeat Simple_repeat 1 22 0 4 865 458 263 0 49 chr12 36789159 36789303 -84468227 + RSINE1 SINE B4 8 144 -21 4 865 3004 142 113 58 chr12 36791155 36791807 -84465723 + RMER6C LTR ERVK 3 690 0 4 865 1077 110 6 34 chr12 36792172 36792351 -84465179 - URR1A DNA MER1_type 0 226 53 4 865 382 224 0 0 chr12 36792394 36792470 -84465060 + B3A SINE B2 5 80 -118 4 865 2028 117 33 60 chr12 36792957 36793293 -84464237 + ORR1A2 LTR MaLR 1 327 0 4 865 362 101 203 0 chr12 36793730 36793799 -84463731 + B1_Mus2 SINE Alu 60 142 -5 4 865 1933 175 44 3 chr12 36794213 36794580 -84462950 - RLTR14 LTR ERV1 0 382 1 4 865 284 163 0 0 chr12 36794995 36795044 -84462486 - ORR1C1 LTR MaLR -8 386 338 4 865 473 205 18 9 chr12 36795050 36795163 -84462367 - Lx2B LINE L1 -4 6996 6883 4 865 1105 162 114 132 chr12 36795168 36795510 -84462020 - ORR1C1 LTR MaLR -42 336 1 4 865 492 232 62 111 chr12 36795583 36795791 -84461739 + B3A SINE B2 1 198 0 4 865 189 0 0 0 chr12 36796183 36796204 -84461326 + (A)n Simple_repeat Simple_repeat 1 21 0 4 865 1699 26 0 0 chr12 36796208 36796398 -84461132 - B2_Mm1t SINE B2 -3 190 1 4 865 322 294 154 0 chr12 36796416 36796552 -84460978 + RSINE1 SINE B4 2 158 -7 4 865 245 128 21 0 chr12 36796770 36796817 -84460713 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 4 865 31 0 0 0 chr12 36797118 36797149 -84460381 + AT_rich Low_complexity Low_complexity 1 31 0 4 865 1407 225 94 9 chr12 36797300 36797641 -84459889 - ORR1D2 LTR MaLR 0 370 1 4 865 484 324 128 13 chr12 36797844 36798157 -84459373 - MLT1A0 LTR MaLR -13 352 4 4 865 402 348 92 18 chr12 36798169 36798397 -84459133 - MLT1C LTR MaLR -17 450 206 4 865 3775 92 20 61 chr12 36798571 36799162 -84458368 + RMER2 LTR ERV1 1 567 0 4 865 1067 222 59 78 chr12 36799179 36799536 -84457994 + MTEa LTR MaLR 29 378 -1 4 865 631 197 0 30 chr12 36800255 36800386 -84457144 + ID_B1 SINE B4 96 222 -2 4 865 455 268 78 21 chr12 36800732 36800873 -84456657 + B3A SINE B2 6 154 -44 4 865 444 19 0 0 chr12 36800873 36800926 -84456604 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 865 186 43 0 0 chr12 36801937 36801960 -84455570 + (A)n Simple_repeat Simple_repeat 1 23 0 4 865 255 204 156 31 chr12 36802575 36802671 -84454859 - MLT1D LTR MaLR 0 505 398 4 865 249 211 0 53 chr12 36802813 36802888 -84454642 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 4 865 520 277 11 22 chr12 36802949 36803130 -84454400 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 865 304 196 21 42 chr12 36803159 36803303 -84454227 + (TATG)n Simple_repeat Simple_repeat 2 142 0 4 865 398 362 65 0 chr12 36803331 36803516 -84454014 - B4A SINE B4 -66 226 30 4 865 406 240 0 30 chr12 36803538 36803637 -84453893 - PB1D7 SINE Alu -7 113 18 4 865 23 33 0 0 chr12 36803659 36803689 -84453841 + AT_rich Low_complexity Low_complexity 1 30 0 4 865 261 307 136 41 chr12 36803700 36803921 -84453609 - MER57F LTR ERV1 0 436 195 4 865 183 162 0 0 chr12 36804035 36804072 -84453458 + (TTA)n Simple_repeat Simple_repeat 2 38 0 4 865 291 54 0 0 chr12 36804463 36804500 -84453030 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 865 270 292 0 0 chr12 36804501 36804566 -84452964 - B1_Mur3 SINE Alu -81 68 4 4 865 371 181 24 24 chr12 36804747 36804832 -84452698 - B4 SINE B4 -206 86 2 4 865 4370 256 68 22 chr12 36805599 36806793 -84450737 + Lx7 LINE L1 6062 7314 -382 4 865 180 0 0 0 chr12 36806793 36806813 -84450717 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 865 308 130 26 0 chr12 36806862 36806939 -84450591 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 4 865 29 28 0 0 chr12 36807002 36807038 -84450492 + AT_rich Low_complexity Low_complexity 1 36 0 4 865 627 207 57 0 chr12 36807377 36807517 -84450013 - B1F1 SINE Alu 0 149 2 4 865 303 286 56 21 chr12 36807518 36807661 -84449869 + L1MEf LINE L1 1966 2113 -4087 4 865 434 319 33 43 chr12 36807798 36808008 -84449522 + MTD LTR MaLR 23 230 -189 4 865 618 122 0 0 chr12 36808110 36808208 -84449322 + (GGGA)n Simple_repeat Simple_repeat 3 100 0 4 865 225 0 0 0 chr12 36808475 36808500 -84449030 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 865 22 35 0 0 chr12 36809014 36809043 -84448487 + AT_rich Low_complexity Low_complexity 1 29 0 4 865 439 296 103 7 chr12 36809048 36809194 -84448336 - RSINE1 SINE B4 -4 161 2 4 865 186 246 88 0 chr12 36809663 36809720 -84447810 - L2b LINE L2 -1 3374 3313 5 865 262 277 37 73 chr12 36809748 36809857 -84447673 + B1F2 SINE Alu 4 108 -41 5 865 1638 161 98 15 chr12 36809890 36810218 -84447312 + ORR1B1 LTR MaLR 38 392 -2 5 865 230 200 0 71 chr12 36810844 36810914 -84446616 + CT-rich Low_complexity Low_complexity 1 65 0 5 865 391 262 163 8 chr12 36810915 36811038 -84446492 - B1F1 SINE Alu -7 142 1 5 865 495 248 31 16 chr12 36811253 36811380 -84446150 + RSINE1 SINE B4 13 141 -24 5 865 22 35 0 0 chr12 36811400 36811429 -84446101 + AT_rich Low_complexity Low_complexity 1 29 0 5 865 225 253 24 60 chr12 36811436 36811520 -84446010 + ID4_ SINE ID 2 82 -1 5 865 283 295 0 60 chr12 36812072 36812155 -84445375 + PB1D9 SINE Alu 1 78 -42 5 865 1046 153 75 19 chr12 36812176 36812389 -84445141 + URR1B DNA MER1_type 1 225 0 5 865 257 312 62 0 chr12 36812679 36812759 -84444771 + B1_Mur2 SINE Alu 63 147 -2 5 865 293 68 23 0 chr12 36812779 36812823 -84444707 + (TTA)n Simple_repeat Simple_repeat 1 45 0 5 865 367 151 82 0 chr12 36812946 36813019 -84444511 - B3A SINE B2 -104 94 16 5 865 208 191 21 0 chr12 36813208 36813255 -84444275 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 865 325 332 132 42 chr12 36813364 36813825 -84443705 + MLT1F LTR MaLR 1 634 -20 5 865 780 234 49 10 chr12 36813885 36814088 -84443442 + ID_B1 SINE B4 9 219 -5 5 865 879 185 214 0 chr12 36814440 36814613 -84442917 + B3 SINE B2 1 210 -6 5 865 207 0 0 0 chr12 36815074 36815097 -84442433 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5 865 393 224 47 12 chr12 36815103 36815189 -84442341 - PB1D10 SINE Alu -21 96 8 5 865 580 214 68 14 chr12 36815401 36815548 -84441982 + RSINE1 SINE B4 8 162 -3 5 865 575 281 88 22 chr12 36815585 36815767 -84441763 + B3 SINE B2 10 203 -13 5 865 497 309 7 7 chr12 36816769 36816906 -84440624 - B1F SINE Alu -11 138 2 5 865 455 87 14 0 chr12 36819414 36819483 -84438047 + (GGGA)n Simple_repeat Simple_repeat 3 72 0 5 865 1062 72 7 0 chr12 36820593 36820745 -84436785 - B2_Mm2 SINE B2 -42 153 1 5 865 1232 102 0 5 chr12 36820805 36820993 -84436537 - URR1A DNA MER1_type 0 226 40 5 865 933 235 25 0 chr12 36821449 36821649 -84435881 + B3 SINE B2 6 210 -6 5 865 264 245 101 95 chr12 36822592 36822750 -84434780 + B3A SINE B2 2 160 -38 5 865 435 258 10 0 chr12 36822754 36822851 -84434679 + B1_Mur2 SINE Alu 1 98 -51 5 865 456 186 9 29 chr12 36822853 36822958 -84434572 - PB1D10 SINE Alu -5 112 10 5 865 306 50 0 0 chr12 36823293 36823333 -84434197 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 865 554 185 84 0 chr12 36823334 36823453 -84434077 - B1_Mur4 SINE Alu -21 129 1 5 865 180 0 0 0 chr12 36823473 36823493 -84434037 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 5 865 398 232 8 59 chr12 36823575 36823694 -84433836 + B1_Mus1 SINE Alu 1 113 -35 5 865 1163 75 0 0 chr12 36824146 36824293 -84433237 + B1_Mus2 SINE Alu 1 147 0 5 865 210 238 0 0 chr12 36824423 36824486 -84433044 + A-rich Low_complexity Low_complexity 1 63 0 5 865 183 42 0 0 chr12 36824668 36824692 -84432838 + (CAGT)n Simple_repeat Simple_repeat 1 24 0 5 865 597 285 0 0 chr12 36825442 36825579 -84431951 - B3 SINE B2 -79 137 1 5 865 577 271 68 29 chr12 36825595 36825800 -84431730 - B3 SINE B2 -1 215 3 5 865 3047 28 7 112 chr12 36825958 36826394 -84431136 - RLTR10 LTR ERVK 0 390 1 5 865 16061 36 43 3 chr12 36826396 36828318 -84429212 - RLTR10-int LTR ERVK -3 1984 10 5 865 3047 28 7 112 chr12 36828320 36828756 -84428774 - RLTR10 LTR ERVK 0 390 1 5 865 611 246 35 21 chr12 36828767 36828912 -84428618 - RSINE1 SINE B4 -14 151 5 5 865 1316 193 155 6 chr12 36828960 36829289 -84428241 - MTD LTR MaLR 0 419 42 5 865 3165 61 2 10 chr12 36830377 36830776 -84426754 + MTA_Mm LTR MaLR 1 396 0 5 866 303 241 69 0 chr12 36833904 36833991 -84423539 - PB1D10 SINE Alu -10 107 15 5 866 211 226 200 21 chr12 36834743 36834838 -84422692 - ID_B1 SINE B4 -32 192 81 5 866 261 279 25 12 chr12 36835592 36835672 -84421858 + ID4 SINE ID 1 81 -2 5 866 417 20 0 0 chr12 36836035 36836085 -84421445 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 866 232 282 13 13 chr12 36836100 36836179 -84421351 - ID4_ SINE ID -2 81 3 5 866 264 30 0 0 chr12 36836850 36836883 -84420647 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 5 866 370 279 80 26 chr12 36837781 36837932 -84419598 - RSINE1 SINE B4 -1 164 6 5 866 452 238 83 45 chr12 36838307 36838439 -84419091 - B1F1 SINE Alu -1 148 12 5 866 655 215 81 70 chr12 36839215 36839400 -84418130 - B3A SINE B2 -3 195 9 5 866 298 323 115 0 chr12 36839611 36839741 -84417789 + RSINE1 SINE B4 2 146 -19 5 866 297 314 42 36 chr12 36840192 36840357 -84417173 - MTEb LTR MaLR -158 221 56 5 866 460 262 41 28 chr12 36840851 36840996 -84416534 + B1_Mur2 SINE Alu 3 149 0 5 866 619 172 154 15 chr12 36841043 36841173 -84416357 + B1_Mus1 SINE Alu 1 148 0 5 866 275 231 92 0 chr12 36841257 36841322 -84416208 - B4 SINE B4 -4 288 218 5 866 633 215 21 7 chr12 36841333 36841478 -84416052 - B1_Mus2 SINE Alu 0 147 1 5 866 613 258 13 6 chr12 36841484 36841640 -84415890 - B4 SINE B4 -68 224 68 5 866 336 206 0 14 chr12 36842335 36842409 -84415121 - PB1D10 SINE Alu 0 117 45 5 866 243 0 0 0 chr12 36842544 36842571 -84414959 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 866 333 308 43 50 chr12 36843214 36843354 -84414176 + RSINE1 SINE B4 3 141 -24 5 866 397 276 34 17 chr12 36844027 36844145 -84413385 - B3A SINE B2 -59 139 20 5 866 505 249 112 24 chr12 36844774 36844943 -84412587 - B3A SINE B2 -8 190 7 5 866 520 185 92 0 chr12 36845008 36845133 -84412397 - B1F SINE Alu 0 149 21 5 866 672 249 22 65 chr12 36846166 36846351 -84411179 - B3A SINE B2 -19 179 3 5 866 522 70 0 0 chr12 36847115 36847186 -84410344 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 866 229 316 25 0 chr12 36847222 36847301 -84410229 - PB1D10 SINE Alu -1 116 36 5 866 432 319 54 11 chr12 36847584 36847768 -84409762 + B3A SINE B2 1 192 -6 5 866 180 0 0 0 chr12 36848492 36848512 -84409018 + (TCCA)n Simple_repeat Simple_repeat 2 21 0 5 866 432 336 28 0 chr12 36848519 36848662 -84408868 - RSINE1 SINE B4 -6 159 13 5 866 251 231 31 0 chr12 36849429 36849494 -84408036 - L1M LINE L1 -717 5407 5341 5 866 760 258 33 28 chr12 36849599 36849814 -84407716 - ID_B1 SINE B4 -8 216 1 5 866 882 185 101 20 chr12 36849845 36850044 -84407486 - B3 SINE B2 0 216 2 5 866 373 256 48 57 chr12 36851030 36851154 -84406376 - B3 SINE B2 -4 212 90 5 866 537 0 0 0 chr12 36853721 36853786 -84403744 + L1Md_T LINE L1 6518 6582 0 5 866 201 74 0 0 chr12 36854114 36854141 -84403389 + (A)n Simple_repeat Simple_repeat 1 27 0 5 866 5032 132 66 57 chr12 36854624 36855740 -84401790 + MurERV4_19-int LTR ERVK 4468 5780 0 5 866 1926 197 55 148 chr12 36855740 36856414 -84401116 + RMER19C LTR ERVK 1 611 0 5 866 237 320 77 15 chr12 36857410 36857540 -84399990 - Charlie1b DNA MER1_type -337 186 49 5 866 578 343 61 38 chr12 36858498 36858892 -84398638 + Lx8 LINE L1 6936 7338 -135 5 866 314 200 208 0 chr12 36860211 36860331 -84397199 + B1_Mus2 SINE Alu 2 146 -1 5 866 225 333 14 0 chr12 36860450 36860522 -84397008 + MTE2b LTR MaLR 1 73 -306 5 866 283 315 0 0 chr12 36860536 36860609 -84396921 + MTE2b LTR MaLR 213 285 -94 5 866 224 317 0 128 chr12 36860792 36860886 -84396644 + ID4 SINE ID 2 83 0 5 866 326 337 0 67 chr12 36860907 36861012 -84396518 + B1F SINE Alu 4 101 -48 5 866 345 62 0 0 chr12 36861425 36861473 -84396057 + (CACAA)n Simple_repeat Simple_repeat 4 51 0 5 866 253 357 41 12 chr12 36861651 36861821 -84395709 + L1MC LINE L1 5453 5627 -2255 5 866 632 196 21 14 chr12 36862695 36862835 -84394695 + B1F SINE Alu 1 141 -8 5 866 443 276 0 47 chr12 36864784 36864913 -84392617 + RSINE1 SINE B4 12 134 -31 5 866 233 307 88 0 chr12 36865154 36865268 -84392262 + Charlie5 DNA MER1_type 9 132 -2492 5 866 364 279 143 9 chr12 36865371 36865483 -84392047 - B3A SINE B2 -24 174 48 5 866 232 234 109 67 chr12 36866198 36866317 -84391213 - Lx9 LINE L1 -8 7636 7513 5 866 180 111 0 0 chr12 36866318 36866345 -84391185 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 866 1028 229 38 15 chr12 36866348 36866614 -84390916 - Lx9 LINE L1 -179 7465 7194 5 866 419 294 9 0 chr12 36867110 36867219 -84390311 - RSINE1 SINE B4 -51 114 5 5 866 289 32 0 7 chr12 36868055 36868096 -84389434 - L1_Mus4 LINE L1 -1425 5625 5587 5 866 3253 151 140 20 chr12 36868100 36868830 -84388700 + RLTR40 LTR ERVK 1 817 0 5 866 210 128 26 0 chr12 36868958 36868997 -84388533 + B2_Mm2 SINE B2 2 41 -154 5 866 252 236 56 0 chr12 36868992 36869064 -84388466 + B3 SINE B2 89 164 -52 5 866 401 245 36 9 chr12 36869147 36869258 -84388272 + B3 SINE B2 1 114 -102 5 866 245 262 0 16 chr12 36869253 36869315 -84388215 + B3 SINE B2 54 114 -102 5 866 245 262 0 16 chr12 36869310 36869372 -84388158 + B3 SINE B2 54 114 -102 5 866 479 240 66 7 chr12 36869367 36869518 -84388012 + B3 SINE B2 54 213 -3 5 866 180 158 0 0 chr12 36869704 36869742 -84387788 + T-rich Low_complexity Low_complexity 1 38 0 5 866 1112 62 14 0 chr12 36869742 36869886 -84387644 - B1_Mus2 SINE Alu 0 147 2 6 866 21 36 0 0 chr12 36869951 36869979 -84387551 + AT_rich Low_complexity Low_complexity 1 28 0 6 866 366 317 65 58 chr12 36870332 36870486 -84387044 + RSINE1 SINE B4 11 165 0 6 866 32 57 0 0 chr12 36870489 36870542 -84386988 + AT_rich Low_complexity Low_complexity 1 53 0 6 866 257 325 26 0 chr12 36870584 36870661 -84386869 - PB1D9 SINE Alu -41 79 1 6 866 212 250 115 35 chr12 36870842 36870868 -84386662 + PB1D7 SINE Alu 14 107 -13 6 866 284 200 0 16 chr12 36870868 36870929 -84386601 + ID_B1 SINE B4 152 211 -13 6 866 216 0 0 0 chr12 36870929 36870953 -84386577 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 866 258 32 0 0 chr12 36871158 36871189 -84386341 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 866 253 242 15 0 chr12 36871535 36871601 -84385929 - B3 SINE B2 0 216 150 6 866 765 194 94 94 chr12 36871612 36871857 -84385673 - ORR1C2 LTR MaLR 0 384 140 6 866 3049 26 3 0 chr12 36871863 36872208 -84385322 - ORR1A0 LTR MaLR 0 346 1 6 866 939 32 0 53 chr12 36872208 36872340 -84385190 - ORR1A0-int LTR MaLR 0 1792 1668 6 866 226 61 0 0 chr12 36872343 36872376 -84385154 - ORR1A0 LTR MaLR -257 127 95 6 866 485 267 93 33 chr12 36872485 36872636 -84384894 - B3A SINE B2 -38 160 1 6 866 991 137 43 32 chr12 36872915 36873103 -84384427 + B2_Mm2 SINE B2 2 191 -4 6 866 717 281 37 78 chr12 36873364 36873634 -84383896 - B4A SINE B4 0 292 34 6 866 186 43 0 0 chr12 36873678 36873701 -84383829 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 866 186 133 0 0 chr12 36873736 36873766 -84383764 + (A)n Simple_repeat Simple_repeat 1 30 0 6 866 622 232 66 8 chr12 36873766 36874126 -84383404 - RMER10A LTR ERVL -2 440 1 6 866 378 245 64 28 chr12 36874133 36874242 -84383288 - B1_Mur1 SINE Alu -34 115 3 6 866 210 118 0 0 chr12 36874715 36874749 -84382781 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 866 621 286 34 25 chr12 36874934 36875138 -84382392 - B3 SINE B2 -4 212 7 6 866 288 240 14 5 chr12 36875205 36875296 -84382234 - BC1_Mm scRNA scRNA -62 90 1 6 866 797 117 102 0 chr12 36876522 36876650 -84380880 + B1_Mur2 SINE Alu 5 145 -4 6 866 6130 36 1 0 chr12 36878201 36878916 -84378614 + L1Md_T LINE L1 5867 6582 0 6 866 1160 48 0 33 chr12 36879477 36879629 -84377901 + B1_Mus2 SINE Alu 1 147 0 6 866 189 74 0 0 chr12 36879629 36879656 -84377874 + (A)n Simple_repeat Simple_repeat 1 27 0 6 866 224 122 24 0 chr12 36880294 36880335 -84377195 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 866 1540 181 97 17 chr12 36880663 36881035 -84376495 + RMER10A LTR ERVL 5 437 -5 6 866 387 250 32 104 chr12 36881066 36881191 -84376339 - PB1D9 SINE Alu 0 120 5 6 866 231 378 69 8 chr12 36881211 36881427 -84376103 + MIRb SINE MIR 39 267 -1 6 866 263 302 7 150 chr12 36885816 36885832 -84371698 + MTD LTR MaLR 16 23 -384 6 866 483 63 0 0 chr12 36885832 36885895 -84371635 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 866 973 234 74 128 chr12 36885895 36886069 -84371461 + MTD LTR MaLR 22 180 -239 6 866 1073 61 7 26 chr12 36886069 36886220 -84371310 - B1_Mus1 SINE Alu 0 148 1 6 866 973 234 74 128 chr12 36886220 36886253 -84371277 + MTD LTR MaLR 181 211 -208 6 866 1234 21 14 0 chr12 36886253 36886398 -84371132 + B1_Mm SINE Alu 1 147 0 6 866 973 234 74 128 chr12 36886398 36886610 -84370920 + MTD LTR MaLR 212 419 0 6 866 274 285 100 0 chr12 36886633 36886763 -84370767 + MIR SINE MIR 57 199 -63 6 866 195 49 23 47 chr12 36886912 36886955 -84370575 + (TTTTTA)n Simple_repeat Simple_repeat 3 44 0 6 866 188 61 0 57 chr12 36886954 36886989 -84370541 + (TATAA)n Simple_repeat Simple_repeat 1 33 0 6 866 28 0 0 0 chr12 36886993 36887021 -84370509 + AT_rich Low_complexity Low_complexity 1 28 0 6 866 457 339 21 26 chr12 36887049 36887240 -84370290 - B3A SINE B2 -8 190 1 6 866 453 305 19 26 chr12 36887342 36887497 -84370033 + RSINE1 SINE B4 12 165 0 6 866 784 218 80 30 chr12 36887629 36887828 -84369702 + B3 SINE B2 2 210 -6 6 866 240 309 0 29 chr12 36887891 36887961 -84369569 + tRNA-Ala-GCY_ tRNA tRNA 3 70 -5 6 866 923 224 20 10 chr12 36888010 36888213 -84369317 + B3 SINE B2 3 207 -9 6 866 351 0 0 0 chr12 36888261 36888300 -84369230 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 6 866 877 64 76 46 chr12 36888300 36888431 -84369099 - B1_Mus1 SINE Alu -13 135 1 6 866 278 226 0 0 chr12 36889259 36889312 -84368218 + MER21B LTR ERV1 14 66 -797 6 866 509 264 132 56 chr12 36889360 36889573 -84367957 + MER21B LTR ERV1 23 251 -612 6 866 251 219 67 27 chr12 36889683 36889696 -84367834 + MER21B LTR ERV1 444 456 -407 6 866 718 180 75 229 chr12 36889696 36889963 -84367567 - URR1A DNA MER1_type 0 226 1 6 866 251 219 67 27 chr12 36889963 36890024 -84367506 + MER21B LTR ERV1 457 521 -342 6 866 321 93 0 0 chr12 36890076 36890130 -84367400 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 866 291 54 0 0 chr12 36890581 36890618 -84366912 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 866 324 305 59 8 chr12 36890683 36890802 -84366728 - B4 SINE B4 -6 286 162 6 866 2377 143 109 17 chr12 36891889 36891985 -84365545 - RLTR20A LTR ERVK 0 541 437 6 866 342 0 0 0 chr12 36891985 36892023 -84365507 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 866 2377 143 109 17 chr12 36892023 36892401 -84365129 - RLTR20A LTR ERVK -105 436 24 6 866 723 279 96 52 chr12 36892572 36892844 -84364686 + B4A SINE B4 6 289 -3 6 866 351 0 0 0 chr12 36892888 36892927 -84364603 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 866 1162 68 7 0 chr12 36892972 36893119 -84364411 - B1_Mus1 SINE Alu 0 148 1 6 866 853 152 12 6 chr12 36893262 36893428 -84364102 + CT-rich Low_complexity Low_complexity 3 169 0 6 866 272 276 0 44 chr12 36893441 36893532 -84363998 - PB1D10 SINE Alu -2 115 29 6 866 251 71 24 0 chr12 36893587 36893629 -84363901 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 866 228 214 0 0 chr12 36893629 36893671 -84363859 - B1_Mur1 SINE Alu -10 139 98 6 866 225 94 0 0 chr12 36893741 36893773 -84363757 + (TTCTG)n Simple_repeat Simple_repeat 2 33 0 6 866 366 23 0 0 chr12 36894583 36894626 -84362904 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 866 500 208 47 9 chr12 36895154 36895261 -84362269 - PB1D9 SINE Alu 0 120 10 6 866 21 0 0 0 chr12 36895431 36895452 -84362078 + AT_rich Low_complexity Low_complexity 1 21 0 6 866 24 0 0 0 chr12 36896023 36896047 -84361483 + AT_rich Low_complexity Low_complexity 1 24 0 6 866 426 39 0 0 chr12 36896047 36896099 -84361431 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 866 540 0 0 0 chr12 36896099 36896158 -84361372 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 866 381 261 144 0 chr12 36896161 36896272 -84361258 - B3A SINE B2 -71 127 1 6 866 481 296 66 0 chr12 36896311 36896463 -84361067 - RSINE1 SINE B4 -2 163 2 6 866 215 302 0 54 chr12 36896564 36896620 -84360910 - ID4_ SINE ID -2 81 29 6 866 27 0 0 0 chr12 36896923 36896950 -84360580 + AT_rich Low_complexity Low_complexity 1 27 0 6 866 746 112 91 63 chr12 36897323 36897466 -84360064 + B1_Mus1 SINE Alu 1 147 -1 6 866 763 212 0 0 chr12 36897603 36897749 -84359781 - RSINE1 SINE B4 -17 148 3 6 866 1232 48 0 0 chr12 36898018 36898164 -84359366 + B1_Mm SINE Alu 2 147 0 6 866 195 125 0 0 chr12 36898164 36898204 -84359326 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 866 288 170 0 0 chr12 36898224 36898277 -84359253 + CT-rich Low_complexity Low_complexity 1 53 0 6 866 744 155 139 0 chr12 36898298 36898427 -84359103 - B1_Mur4 SINE Alu -3 147 1 6 866 22 56 0 0 chr12 36898486 36898522 -84359008 + AT_rich Low_complexity Low_complexity 1 36 0 6 866 1180 7 36 0 chr12 36898644 36898784 -84358746 + B1_Mus2 SINE Alu 1 145 -2 6 866 414 0 0 0 chr12 36899031 36899077 -84358453 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 866 330 279 76 76 chr12 36901076 36901208 -84356322 + B3A SINE B2 84 215 -1 6 866 2008 282 54 104 chr12 36901278 36902223 -84355307 - Lx5 LINE L1 -19 7031 6134 6 866 781 168 27 2 chr12 36903328 36903474 -84354056 - B1_Mur2 SINE Alu -1 148 2 6 866 243 301 219 20 chr12 36903652 36903798 -84353732 + MIRb SINE MIR 27 201 -67 6 866 1080 70 0 27 chr12 36904281 36904429 -84353101 - B1_Mus2 SINE Alu 0 147 4 6 866 1503 40 0 2 chr12 36904807 36905208 -84352322 + (TGG)n Simple_repeat Simple_repeat 1 400 0 6 866 492 284 126 20 chr12 36905889 36906131 -84351399 - ORR1E LTR MaLR -96 274 19 6 866 1001 251 60 46 chr12 36906447 36906662 -84350868 - MTEa LTR MaLR 0 379 163 6 866 245 29 29 0 chr12 36906662 36906696 -84350834 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 866 1001 251 60 46 chr12 36906696 36906847 -84350683 - MTEa LTR MaLR -217 162 8 6 866 222 37 0 0 chr12 36908676 36908703 -84348827 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 866 1140 75 0 0 chr12 36909714 36909860 -84347670 + B1_Mus1 SINE Alu 1 146 -2 6 866 602 175 133 16 chr12 36909942 36910070 -84347460 - B1_Mur4 SINE Alu 0 150 8 6 866 21 82 0 0 chr12 36911505 36911554 -84345976 + AT_rich Low_complexity Low_complexity 1 49 0 6 866 453 202 21 20 chr12 36911613 36911729 -84345801 - B3 SINE B2 -72 123 15 6 866 562 244 25 82 chr12 36911726 36911922 -84345608 - B3 SINE B2 -31 185 1 6 866 798 223 96 10 chr12 36912674 36912873 -84344657 + ID_B1 SINE B4 2 217 -7 6 866 335 289 31 0 chr12 36915791 36915888 -84341642 + RSINE1 SINE B4 44 143 -22 6 866 381 75 0 0 chr12 36915908 36915961 -84341569 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 866 1079 92 6 23 chr12 36915966 36916143 -84341387 - B2_Mm2 SINE B2 -20 175 2 6 866 364 301 0 37 chr12 36916182 36916289 -84341241 + RSINE1 SINE B4 2 104 -61 6 866 221 233 40 40 chr12 36916355 36916431 -84341099 + RSINE1 SINE B4 84 159 -6 6 866 23 0 0 0 chr12 36916436 36916459 -84341071 + AT_rich Low_complexity Low_complexity 1 23 0 6 866 272 274 70 97 chr12 36916657 36916808 -84340722 + B1F1 SINE Alu 1 142 -7 6 866 726 230 86 33 chr12 36917269 36917570 -84339960 - RLTR15 LTR ERVK -16 343 27 7 866 239 290 75 68 chr12 36918623 36918756 -84338774 - MER5B DNA MER1_type -1 177 44 7 866 589 252 50 95 chr12 36919434 36919895 -84337635 - RLTR11A2 LTR ERVK -22 431 1 7 866 438 20 0 0 chr12 36920863 36920914 -84336616 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 866 22 0 0 0 chr12 36922695 36922717 -84334813 + AT_rich Low_complexity Low_complexity 1 22 0 7 866 210 143 0 0 chr12 36923197 36923232 -84334298 + (T)n Simple_repeat Simple_repeat 1 35 0 7 866 407 273 22 88 chr12 36924345 36924526 -84333004 + L1MDa LINE L1 144 312 -6321 7 866 799 190 82 31 chr12 36925476 36925692 -84331838 - Lx7 LINE L1 -12 7684 7271 7 866 915 159 6 17 chr12 36925692 36925865 -84331665 - RLTRETN_Mm LTR ERVK 0 322 152 7 866 39079 9 2 7 chr12 36925865 36931266 -84326264 + L1Md_A LINE L1 214 5586 -297 7 866 9026 12 0 0 chr12 36931266 36932262 -84325268 + L1Md_A LINE L1 5587 6582 0 7 866 915 108 6 83 chr12 36932264 36932445 -84325085 - RLTRETN_Mm LTR ERVK -155 167 1 7 866 975 228 144 29 chr12 36932445 36932820 -84324710 - Lx7 LINE L1 -193 7503 7086 7 866 3189 201 66 8 chr12 36932828 36933461 -84324069 + Lx7 LINE L1 6294 6963 -733 7 866 1246 34 0 7 chr12 36933520 36933668 -84323862 - B1_Mm SINE Alu 0 147 1 7 866 212 163 0 0 chr12 36933976 36934019 -84323511 + T-rich Low_complexity Low_complexity 1 43 0 7 866 272 303 11 11 chr12 36934053 36934143 -84323387 - L1MEg2 LINE L1 -6160 292 203 7 866 425 340 39 31 chr12 36934255 36934513 -84323017 + L1ME3A LINE L1 5880 6139 -34 7 866 393 232 88 50 chr12 36934520 36934679 -84322851 + RLTR15 LTR ERVK 1 165 -194 7 866 262 324 64 28 chr12 36934685 36934733 -84322797 + RLTR15 LTR ERVK 97 147 -212 7 866 225 0 0 0 chr12 36934733 36934758 -84322772 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 866 262 324 64 28 chr12 36934758 36934960 -84322570 + RLTR15 LTR ERVK 148 356 -3 7 866 468 62 0 0 chr12 36935340 36935404 -84322126 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 866 326 273 184 18 chr12 36936980 36937041 -84320489 - L1MA9 LINE L1 -11 6301 6240 7 866 324 0 0 0 chr12 36937041 36937077 -84320453 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 866 326 273 184 18 chr12 36937077 36937287 -84320243 - L1MA9 LINE L1 -73 6239 5987 7 866 783 238 56 56 chr12 36937887 36938172 -84319358 - B4A SINE B4 -6 286 2 7 866 326 327 36 0 chr12 36938194 36938304 -84319226 - PB1D10 SINE Alu -1 116 3 7 866 224 255 54 18 chr12 36938323 36938334 -84319196 - ID4 SINE ID 0 83 26 7 866 228 200 67 0 chr12 36938334 36938379 -84319151 - ID SINE ID -150 74 27 7 866 211 227 52 26 chr12 36939445 36939522 -84318008 + (CATA)n Simple_repeat Simple_repeat 4 82 0 7 866 694 167 128 8 chr12 36940053 36940186 -84317344 + B1_Mur3 SINE Alu 1 149 0 7 866 948 84 0 0 chr12 36940194 36940325 -84317205 + (GAGAA)n Simple_repeat Simple_repeat 4 134 0 7 866 819 172 144 0 chr12 36940380 36940554 -84316976 + B3 SINE B2 7 205 -11 7 866 197 163 0 20 chr12 36940593 36940614 -84316916 + T-rich Low_complexity Low_complexity 30 49 0 7 866 1181 106 0 6 chr12 36940614 36940795 -84316735 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 7 866 587 26 26 0 chr12 36940805 36940881 -84316649 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 7 866 197 163 0 20 chr12 36940881 36940898 -84316632 + T-rich Low_complexity Low_complexity 3 19 0 7 866 387 41 0 0 chr12 36942888 36942937 -84314593 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 866 633 259 127 34 chr12 36942953 36943189 -84314341 - B4 SINE B4 -7 285 28 7 866 236 275 28 42 chr12 36943131 36943203 -84314327 - BC1_Mm scRNA scRNA -71 81 11 7 866 183 186 0 0 chr12 36943906 36943949 -84313581 + A-rich Low_complexity Low_complexity 1 43 0 7 866 935 227 28 24 chr12 36944108 36944320 -84313210 + ID_B1 SINE B4 3 215 -9 7 866 2075 161 146 5 chr12 36944961 36945330 -84312200 + MTC LTR MaLR 1 421 0 7 866 349 296 74 79 chr12 36947515 36947717 -84309813 - L1MB8 LINE L1 -11 6167 5967 7 866 576 181 103 0 chr12 36949927 36950043 -84307487 - B3A SINE B2 -69 129 2 7 866 204 233 23 0 chr12 36950136 36950179 -84307351 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 866 233 252 358 18 chr12 36950299 36950408 -84307122 - RSINE1 SINE B4 -14 151 6 7 866 393 136 0 0 chr12 36950558 36950624 -84306906 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 866 1066 139 0 0 chr12 36952057 36952222 -84305308 - URR1B DNA MER1_type 0 225 61 7 866 620 284 13 88 chr12 36952503 36952731 -84304799 + B3 SINE B2 1 211 -5 7 866 434 341 26 53 chr12 36952752 36952978 -84304552 - MIRb SINE MIR -14 254 35 7 866 27 29 0 0 chr12 36953070 36953104 -84304426 + AT_rich Low_complexity Low_complexity 1 34 0 7 866 1046 110 32 4 chr12 36953179 36953345 -84304185 + B2_Mm2 SINE B2 26 190 -5 7 866 292 239 11 43 chr12 36953414 36953506 -84304024 + RMER1B Other Other 13 101 -965 7 866 3020 204 102 56 chr12 36953505 36954359 -84303171 + RMER1B Other Other 276 1057 -9 7 866 329 256 253 26 chr12 36954400 36954633 -84302897 + L1MA7 LINE L1 3983 4268 -1875 7 866 1819 249 84 94 chr12 36954708 36954801 -84302729 + L1MA7 LINE L1 4248 4340 -1800 7 866 385 266 0 0 chr12 36954801 36954880 -84302650 + ID4 SINE ID 3 81 -2 7 866 1819 249 84 94 chr12 36954880 36954979 -84302551 + L1MA7 LINE L1 4341 4438 -1702 7 866 4612 68 25 27 chr12 36954979 36955567 -84301963 - LTRIS_Mus LTR ERV1 0 587 1 7 866 1819 249 84 94 chr12 36955567 36955756 -84301774 + L1MA7 LINE L1 4439 4607 -1533 7 866 1549 78 5 0 chr12 36955756 36955947 -84301583 - B2_Mm1t SINE B2 0 193 2 7 866 1819 249 84 94 chr12 36955947 36956175 -84301355 + L1MA7 LINE L1 4608 4854 -1286 7 866 1009 231 25 0 chr12 36956175 36956378 -84301152 - B3 SINE B2 -5 211 4 7 866 1819 249 84 94 chr12 36956378 36956820 -84300710 + L1MA7 LINE L1 4855 5292 -848 7 866 5021 125 132 70 chr12 36956842 36957018 -84300512 + RLTR25A LTR ERVK 5 207 -896 7 866 1190 48 0 93 chr12 36957018 36957180 -84300350 + B1_Mus2 SINE Alu 1 147 0 7 866 5021 125 132 70 chr12 36957180 36958037 -84299493 + RLTR25A LTR ERVK 208 1103 0 7 866 803 271 136 13 chr12 36958545 36959009 -84298521 + L1MA7 LINE L1 5709 6252 -39 7 866 299 179 31 21 chr12 36959115 36959212 -84298318 + GA-rich Low_complexity Low_complexity 4 101 0 7 866 190 71 119 0 chr12 36959216 36959258 -84298272 + (CAGAA)n Simple_repeat Simple_repeat 4 50 0 7 866 229 355 53 16 chr12 36959381 36959570 -84297960 + HAL1 LINE L1 588 783 -1724 7 866 575 233 68 30 chr12 36959590 36959723 -84297807 - B1_Mur1 SINE Alu 0 149 12 7 866 261 0 0 0 chr12 36959756 36959785 -84297745 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 866 562 261 27 27 chr12 36959797 36959943 -84297587 - B3A SINE B2 -50 148 3 7 866 541 302 16 0 chr12 36960141 36960267 -84297263 + RSINE1 SINE B4 17 144 -21 7 866 1453 296 99 31 chr12 36960318 36961119 -84296411 + L1MA10 LINE L1 5444 6298 -36 7 866 847 171 27 27 chr12 36961121 36961271 -84296259 - B1_Mur4 SINE Alu 0 150 1 7 866 387 264 257 0 chr12 36961336 36961480 -84296050 + B3A SINE B2 2 182 -16 7 866 368 310 11 0 chr12 36961625 36961712 -84295818 + ID SINE ID 1 88 -136 7 866 271 322 0 11 chr12 36961932 36962026 -84295504 + (TG)n Simple_repeat Simple_repeat 2 94 0 7 108 887 278 70 67 chr12 36962158 36962532 -84294998 - MTE2a LTR MaLR -4 375 1 7 867 906 204 82 68 chr12 36963123 36963402 -84294128 - MLT1B LTR MaLR -104 286 4 7 867 562 274 61 40 chr12 36963407 36963684 -84293846 + HAL1 LINE L1 2028 2310 -197 7 867 438 20 0 0 chr12 36964840 36964891 -84292639 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 867 324 272 76 19 chr12 36965375 36965480 -84292050 + MER20 DNA MER1_type 105 215 -4 7 867 2183 131 100 0 chr12 36965480 36965839 -84291691 + MTC LTR MaLR 26 420 -1 7 867 995 304 62 24 chr12 36965923 36966524 -84291006 - L1MA4 LINE L1 -1667 6029 5437 7 867 832 238 31 10 chr12 36966881 36967076 -84290454 + B3 SINE B2 16 214 -2 7 867 24 32 0 0 chr12 36967157 36967188 -84290342 + AT_rich Low_complexity Low_complexity 1 31 0 7 867 380 319 95 64 chr12 36968771 36969066 -84288464 - ORR1E LTR MaLR -5 354 51 7 867 180 271 0 59 chr12 36970216 36970267 -84287263 + L2b LINE L2 3251 3298 -77 7 867 220 184 0 0 chr12 36971111 36971149 -84286381 + CT-rich Low_complexity Low_complexity 5 42 0 7 867 24 32 0 0 chr12 36971960 36971991 -84285539 + AT_rich Low_complexity Low_complexity 1 31 0 7 867 306 0 0 0 chr12 36972105 36972139 -84285391 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 7 867 419 352 8 0 chr12 36972216 36972338 -84285192 + RSINE1 SINE B4 1 123 -42 7 867 266 206 0 16 chr12 36972391 36972455 -84285075 - MLT1A0 LTR MaLR -1 407 345 7 867 359 292 45 30 chr12 36973224 36973358 -84284172 - MLT1A0 LTR MaLR -224 141 6 7 867 238 247 33 22 chr12 36973799 36973890 -84283640 - MER53 DNA hAT -83 110 19 7 867 261 0 0 0 chr12 36974133 36974162 -84283368 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 867 432 0 0 0 chr12 36975266 36975314 -84282216 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 867 762 333 74 8 chr12 36975708 36976142 -84281388 + MLT2B1 LTR ERVL 1 552 -15 7 867 566 143 22 8 chr12 36976290 36976424 -84281106 + (TA)n Simple_repeat Simple_repeat 2 137 0 7 867 496 232 3 28 chr12 36976435 36976561 -84280969 - PB1 SINE Alu -93 218 32 7 867 414 0 0 0 chr12 36976986 36977032 -84280498 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 867 229 363 85 26 chr12 36977032 36977374 -84280156 - L1MB3 LINE L1 -36 6147 5786 7 867 2711 106 29 3 chr12 36977555 36977932 -84279598 - Lx LINE L1 -6 6648 6262 7 867 246 304 73 37 chr12 36980273 36980437 -84277093 - MER96B DNA hAT -190 227 58 7 867 405 0 0 0 chr12 36980614 36980659 -84276871 + (TATG)n Simple_repeat Simple_repeat 2 46 0 7 867 1247 55 0 0 chr12 36980842 36980988 -84276542 + B1_Mm SINE Alu 1 146 -1 7 867 180 111 0 0 chr12 36980989 36981016 -84276514 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7 867 441 0 0 0 chr12 36981643 36981692 -84275838 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 867 288 222 125 0 chr12 36981699 36981771 -84275759 - RSINE1 SINE B4 -69 96 16 7 867 662 224 55 55 chr12 36982009 36982208 -84275322 - Charlie16a DNA MER1_type -137 205 7 7 867 356 299 39 59 chr12 36982233 36982386 -84275144 + MIR3 SINE MIR 10 159 -49 7 867 1666 238 52 83 chr12 36983203 36983590 -84273940 + RLTR28B LTR ERVL 2 400 -81 8 867 1254 48 0 0 chr12 36983590 36983736 -84273794 - B1_Mus2 SINE Alu 0 147 2 8 867 1666 238 52 83 chr12 36983736 36983843 -84273687 + RLTR28B LTR ERVL 401 481 0 8 867 204 40 0 0 chr12 36984274 36984299 -84273231 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 867 289 304 0 32 chr12 36984611 36984706 -84272824 + MLT1A1 LTR MaLR 315 406 -2 8 867 189 107 0 0 chr12 36986089 36986117 -84271413 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 867 712 328 33 22 chr12 36986117 36986391 -84271139 + B4 SINE B4 5 281 -11 8 867 7740 58 2 0 chr12 36987114 36988066 -84269464 - L1_Mus1 LINE L1 -6 6561 5608 8 867 1978 44 0 4 chr12 36988294 36988523 -84269007 - L1Md_T LINE L1 -2 6580 6353 8 867 338 287 73 91 chr12 36989576 36989741 -84267789 - RSINE1 SINE B4 0 165 4 8 867 807 249 148 4 chr12 36990156 36990386 -84267144 - Lx6 LINE L1 0 7460 7198 8 867 1290 80 40 0 chr12 36990746 36990921 -84266609 - B2_Mm2 SINE B2 0 195 14 8 867 387 0 0 0 chr12 36991106 36991149 -84266381 + (T)n Simple_repeat Simple_repeat 1 43 0 8 867 4644 30 4 0 chr12 36991731 36992239 -84265291 - L1Md_T LINE L1 0 6582 6073 8 867 257 20 59 20 chr12 36992336 36992387 -84265143 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 8 867 1509 186 4 4 chr12 36992682 36992952 -84264578 + MTD LTR MaLR 14 283 -136 8 867 1229 55 7 0 chr12 36993278 36993423 -84264107 - B1_Mus2 SINE Alu -1 146 1 8 867 2987 90 31 21 chr12 36993427 36993847 -84263683 - L1_Mus4 LINE L1 -2 6634 6211 8 867 616 314 65 114 chr12 36995192 36995516 -84262014 - MTEa LTR MaLR -21 358 51 8 867 848 118 0 7 chr12 36995531 36995668 -84261862 + (TTTC)n Simple_repeat Simple_repeat 1 136 0 8 867 231 36 0 0 chr12 36995670 36995698 -84261832 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 8 867 1547 79 5 19 chr12 36995722 36995929 -84261601 - L1_Mus1 LINE L1 0 6567 6364 8 867 2532 146 10 27 chr12 36996549 36996963 -84260567 - MTB_Mm LTR MaLR 0 407 1 8 867 331 73 18 18 chr12 36997361 36997417 -84260113 + (TCC)n Simple_repeat Simple_repeat 3 58 0 8 867 3846 191 84 119 chr12 36997425 36998474 -84259056 - RMER1B Other Other -11 1055 44 8 867 393 368 23 0 chr12 36998557 36998690 -84258840 + RSINE1 SINE B4 2 137 -28 8 867 2225 170 68 48 chr12 36998783 36999265 -84258265 - RLTR16 LTR ERVK -12 493 2 8 867 370 329 102 36 chr12 37000560 37000727 -84256803 - L3b LINE CR1 -38 444 267 1 867 340 319 116 42 chr12 37001289 37001600 -84255930 + MLT1F LTR MaLR 211 567 -2 2 867 526 250 64 7 chr12 37001955 37002096 -84255434 - RMER5 LTR ERV1 -12 522 374 3 867 1415 213 54 84 chr12 37002097 37002466 -84255064 + ORR1C2 LTR MaLR 1 358 -26 4 867 1580 203 0 0 chr12 37002466 37002762 -84254768 - Lx5 LINE L1 -464 6586 6291 5 867 914 215 57 21 chr12 37002794 37003141 -84254389 + Lx4B LINE L1 6608 7058 0 6 867 334 93 111 0 chr12 37003146 37003200 -84254330 + ORR1C2 LTR MaLR 325 384 0 7 867 863 275 125 0 chr12 37003210 37003505 -84254025 - RMER5 LTR ERV1 -161 373 42 3 867 1240 184 99 13 chr12 37003747 37004027 -84253503 - ORR1C2 LTR MaLR 0 384 34 8 867 1336 157 11 87 chr12 37004677 37005046 -84252484 - Lx7 LINE L1 0 7696 7356 9 867 257 228 0 0 chr12 37005123 37005180 -84252350 - Lx7 LINE L1 -354 7342 7286 9 867 36413 42 0 3 chr12 37005570 37012004 -84245526 - L1Md_T LINE L1 0 6585 73 1 867 1817 241 45 12 chr12 37012146 37012654 -84244876 - Lx7 LINE L1 -1366 6330 5806 9 867 4215 173 33 20 chr12 37012634 37014236 -84243294 - L1_Mur3 LINE L1 -3980 1900 276 1 867 547 168 9 49 chr12 37014603 37014831 -84242699 + GA-rich Low_complexity Low_complexity 1 218 0 1 867 692 147 47 15 chr12 37014857 37015170 -84242360 + GA-rich Low_complexity Low_complexity 1 323 0 1 867 604 74 0 21 chr12 37015203 37015300 -84242230 + (GGA)n Simple_repeat Simple_repeat 3 97 0 1 867 301 153 28 0 chr12 37015807 37015879 -84241651 + GA-rich Low_complexity Low_complexity 2 75 0 1 867 664 320 0 0 chr12 37015896 37016043 -84241487 - B3A SINE B2 -26 172 26 1 867 180 111 0 0 chr12 37016043 37016070 -84241460 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 867 339 25 0 0 chr12 37016127 37016167 -84241363 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 867 551 53 13 0 chr12 37016898 37016973 -84240557 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 1 867 315 0 0 0 chr12 37017423 37017458 -84240072 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 867 227 264 79 70 chr12 37018205 37018319 -84239211 + MIR SINE MIR 34 148 -114 2 867 480 287 81 90 chr12 37018559 37018904 -84238626 - MER45B DNA Tip100 -1 1039 698 2 867 525 355 97 33 chr12 37018920 37019281 -84238249 - MER45B DNA Tip100 -449 591 208 2 867 24 0 0 0 chr12 37021510 37021534 -84235996 + AT_rich Low_complexity Low_complexity 1 24 0 2 867 2613 44 0 0 chr12 37021538 37021854 -84235676 + L1Md_T LINE L1 6265 6580 -2 2 867 513 288 94 18 chr12 37022525 37022659 -84234871 + MTE2a LTR MaLR 186 322 -57 2 867 180 0 0 0 chr12 37022659 37022679 -84234851 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 2 867 513 288 94 18 chr12 37022679 37022714 -84234816 + MTE2a LTR MaLR 323 368 -11 2 867 460 319 70 16 chr12 37022755 37022940 -84234590 - LTR16E2 LTR ERVL -18 550 356 2 867 311 271 175 50 chr12 37023352 37023632 -84233898 + L1M5 LINE L1 5335 5649 -475 2 867 2635 187 132 6 chr12 37023648 37024305 -84233225 + Lx9 LINE L1 6899 7638 -6 2 867 707 298 111 9 chr12 37024543 37024994 -84232536 + L1M2 LINE L1 3491 3987 -2156 2 867 4397 76 5 53 chr12 37025026 37025667 -84231863 - L1_Mus2 LINE L1 -6 6560 5951 3 867 2674 40 6 0 chr12 37025669 37026017 -84231513 + L1_Mus2 LINE L1 5594 5943 -623 3 867 560 325 60 28 chr12 37026013 37026412 -84231118 + L1M2 LINE L1 3972 4383 -1760 2 867 421 247 60 20 chr12 37026504 37026653 -84230877 + L1M2 LINE L1 5123 5277 -866 2 867 704 229 7 0 chr12 37026655 37026795 -84230735 + B1_Mur1 SINE Alu 1 141 -8 3 867 447 162 0 0 chr12 37026836 37026916 -84230614 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 867 518 355 87 9 chr12 37026952 37027415 -84230115 + L1_Mur1 LINE L1 5246 5766 -408 3 867 1390 274 16 87 chr12 37027415 37027963 -84229567 - RMER19C LTR ERVK 0 902 220 3 867 249 250 0 68 chr12 37028086 37028159 -84229371 + RSINE1 SINE B4 98 165 0 3 867 211 300 27 54 chr12 37028247 37028321 -84229209 + B4A SINE B4 4 75 -217 3 867 377 283 0 0 chr12 37028255 37028340 -84229190 + ID4_ SINE ID 8 92 -60 3 867 181 307 25 51 chr12 37028871 37028950 -84228580 + L2b LINE L2 2820 2896 -523 3 867 235 370 88 44 chr12 37029098 37029395 -84228135 + L2b LINE L2 3066 3375 0 3 867 252 0 0 0 chr12 37030346 37030374 -84227156 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 867 35 0 0 0 chr12 37030410 37030445 -84227085 + AT_rich Low_complexity Low_complexity 1 35 0 4 867 605 282 13 0 chr12 37030752 37030901 -84226629 + RSINE1 SINE B4 15 165 0 4 867 233 339 119 36 chr12 37030901 37030936 -84226594 + B3 SINE B2 42 212 -4 4 867 583 325 55 61 chr12 37031272 37031633 -84225897 - ORR1E LTR MaLR 0 359 1 4 867 666 314 28 9 chr12 37032219 37032431 -84225099 - B3 SINE B2 0 216 1 4 867 33 0 0 0 chr12 37032923 37032956 -84224574 + AT_rich Low_complexity Low_complexity 1 33 0 4 867 190 0 0 62 chr12 37034257 37034289 -84223241 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 4 867 374 165 13 0 chr12 37034354 37034433 -84223097 + CT-rich Low_complexity Low_complexity 3 82 0 4 867 216 0 0 0 chr12 37034450 37034474 -84223056 + (T)n Simple_repeat Simple_repeat 1 24 0 4 867 182 255 0 141 chr12 37035398 37035462 -84222068 - MER5A DNA MER1_type -96 93 39 4 867 237 83 0 0 chr12 37035619 37035655 -84221875 + (T)n Simple_repeat Simple_repeat 1 36 0 5 867 335 309 34 68 chr12 37035773 37035919 -84221611 + MER20 DNA MER1_type 79 219 0 5 867 193 284 52 83 chr12 37037050 37037146 -84220384 - MIRc SINE MIR -125 143 51 5 867 798 357 90 15 chr12 37037580 37037992 -84219538 - MLT1F2 LTR MaLR -115 445 3 5 867 321 252 45 36 chr12 37039013 37039124 -84218406 - L1MC5 LINE L1 -163 7798 7687 5 867 371 285 201 11 chr12 37039237 37039411 -84218119 + MER20 DNA MER1_type 4 210 -9 5 867 487 307 28 14 chr12 37039652 37039794 -84217736 - RSINE1 SINE B4 -20 145 2 5 867 200 200 0 0 chr12 37043351 37043391 -84214139 + CT-rich Low_complexity Low_complexity 1 40 0 5 867 224 297 0 51 chr12 37045042 37045120 -84212410 - ID4_ SINE ID -2 81 8 5 867 368 314 47 39 chr12 37046755 37046884 -84210646 + RSINE1 SINE B4 28 157 -8 5 867 24 32 0 0 chr12 37046884 37046915 -84210615 + AT_rich Low_complexity Low_complexity 1 31 0 6 867 993 279 0 14 chr12 37047185 37047407 -84210123 + ID_B1 SINE B4 6 224 0 6 867 202 176 0 38 chr12 37047407 37047424 -84210106 + (CAAA)n Simple_repeat Simple_repeat 2 18 0 6 867 207 0 0 0 chr12 37047424 37047447 -84210083 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 867 202 176 0 38 chr12 37047447 37047482 -84210048 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 867 2483 47 0 216 chr12 37047714 37048178 -84209352 + RLTR10B2 LTR ERVK 2 365 0 6 867 745 154 66 7 chr12 37048282 37048419 -84209111 + B1_Mus2 SINE Alu 2 146 -1 6 867 220 67 0 0 chr12 37048428 37048458 -84209072 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 6 867 269 172 16 0 chr12 37048465 37048529 -84209001 + (CAA)n Simple_repeat Simple_repeat 2 66 0 6 867 536 319 56 14 chr12 37048667 37048810 -84208720 + RSINE1 SINE B4 3 151 -14 6 867 504 72 0 0 chr12 37048812 37048881 -84208649 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 867 916 238 23 18 chr12 37049105 37049323 -84208207 + MTEb LTR MaLR 96 314 -65 7 867 704 239 73 15 chr12 37049333 37049599 -84207931 + MTD LTR MaLR 10 419 0 7 867 466 326 31 16 chr12 37049624 37049817 -84207713 - B3A SINE B2 0 198 3 7 867 327 284 216 36 chr12 37049878 37050017 -84207513 - B4 SINE B4 -20 272 109 7 867 4097 71 5 1 chr12 37050048 37050817 -84206713 + L1_Mus1 LINE L1 5290 6060 -507 7 867 267 227 30 0 chr12 37050874 37050940 -84206590 + MTEb LTR MaLR 312 379 0 7 867 414 0 0 0 chr12 37051957 37052003 -84205527 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 867 375 292 146 0 chr12 37052005 37052142 -84205388 - B4A SINE B4 -23 269 113 7 867 405 318 20 5 chr12 37052864 37053060 -84204470 - L1MB1 LINE L1 -251 5938 5740 7 867 674 304 15 30 chr12 37053661 37053861 -84203669 - B3A SINE B2 0 198 2 7 867 230 81 27 0 chr12 37055653 37055690 -84201840 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 867 182 37 0 36 chr12 37055772 37055800 -84201730 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 8 867 848 261 87 29 chr12 37056277 37056518 -84201012 - B4A SINE B4 -23 269 15 8 867 3637 193 172 66 chr12 37056645 37056845 -84200685 - RMER1A Other Other -1 1029 868 8 867 540 0 0 0 chr12 37056845 37056905 -84200625 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 8 867 3637 206 161 60 chr12 37056905 37057741 -84199789 - RMER1A Other Other -163 867 1 8 867 306 310 144 23 chr12 37059305 37059569 -84197961 - LTR33 LTR ERVL -136 379 84 8 867 375 290 234 4 chr12 37061952 37062208 -84195322 + MLT1A0 LTR MaLR 45 359 -6 8 867 38338 34 1 1 chr12 37062737 37069629 -84187901 - L1Md_T LINE L1 0 6585 1 8 867 1251 198 165 34 chr12 37069780 37070131 -84187399 - MTD LTR MaLR 0 419 23 8 867 273 57 0 0 chr12 37070141 37070176 -84187354 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 8 867 715 281 18 36 chr12 37072166 37072443 -84185087 - B4 SINE B4 -19 273 2 9 867 276 281 99 23 chr12 37072497 37072668 -84184862 - L1MCa LINE L1 -5472 1036 853 9 867 408 20 0 0 chr12 37072879 37072928 -84184602 + (CCTG)n Simple_repeat Simple_repeat 2 50 0 9 867 249 200 66 16 chr12 37072946 37073007 -84184523 - L1MCa LINE L1 -6065 443 380 9 867 335 278 176 13 chr12 37073051 37073204 -84184326 - L1MCa LINE L1 -6311 197 20 9 867 26 30 0 0 chr12 37073318 37073351 -84184179 + AT_rich Low_complexity Low_complexity 1 33 0 9 867 10679 80 20 0 chr12 37073662 37075824 -84181706 - L1_Mus1 LINE L1 -1 6566 4355 9 867 7059 77 5 8 chr12 37075824 37076806 -84180724 - L1_Mus1 LINE L1 -3276 2607 1629 9 867 2190 155 73 3 chr12 37076801 37077170 -84180360 - L1_Mus1 LINE L1 -5826 790 396 9 867 418 276 9 0 chr12 37077170 37077275 -84180255 + RLTR16 LTR ERVK 399 504 -1 9 867 2833 61 0 0 chr12 37077651 37077997 -84179533 + ORR1A1 LTR MaLR 1 346 0 9 867 492 249 68 44 chr12 37078188 37078394 -84179136 + L1M5 LINE L1 5562 5772 -401 9 867 21 0 0 0 chr12 37078540 37078561 -84178969 + GC_rich Low_complexity Low_complexity 1 21 0 9 867 207 0 0 0 chr12 37078593 37078616 -84178914 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 867 3019 76 22 5 chr12 37080589 37080999 -84176531 - L1_Mus3 LINE L1 -9 6629 6213 1 867 207 0 0 0 chr12 37081752 37081775 -84175755 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 867 203 184 0 0 chr12 37081929 37081967 -84175563 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 867 263 177 0 16 chr12 37082081 37082144 -84175386 + GA-rich Low_complexity Low_complexity 3 64 0 1 867 270 73 0 0 chr12 37082145 37082186 -84175344 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 867 729 144 32 4 chr12 37082949 37083231 -84174299 + (CA)n Simple_repeat Simple_repeat 1 290 0 1 867 214 359 33 0 chr12 37083821 37083913 -84173617 + PB1D10 SINE Alu 1 95 -22 1 867 228 246 200 0 chr12 37083873 37083938 -84173592 + ID_B1 SINE B4 137 214 -10 1 867 1160 239 47 22 chr12 37084389 37084706 -84172824 + MTE2b LTR MaLR 55 379 0 1 867 257 368 0 59 chr12 37084767 37084868 -84172662 - Charlie7 DNA MER1_type -2517 95 1 1 867 689 247 67 0 chr12 37084915 37085065 -84172465 - RSINE1 SINE B4 0 165 6 1 867 382 120 64 0 chr12 37085876 37086001 -84171529 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 1 867 243 0 0 0 chr12 37086385 37086412 -84171118 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1 867 212 118 0 0 chr12 37086476 37086510 -84171020 - ID4_ SINE ID 0 83 50 1 867 458 261 2 20 chr12 37086701 37086853 -84170677 + ORR1E LTR MaLR 1 144 -226 1 867 310 306 16 40 chr12 37087139 37087265 -84170265 + ORR1E LTR MaLR 249 371 -8 1 867 393 260 94 51 chr12 37087270 37087408 -84170122 + ORR1E-int LTR MaLR 3 146 -1434 1 867 422 316 47 78 chr12 37087443 37087635 -84169895 + B3A SINE B2 2 187 -8 1 867 1650 198 82 64 chr12 37087673 37088158 -84169372 - RLTR11A LTR ERVK -34 494 1 1 867 1762 332 106 52 chr12 37088165 37088223 -84169307 + ORR1E-int LTR MaLR 213 274 -1306 1 867 266 0 29 0 chr12 37088223 37088257 -84169273 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 867 1762 332 106 52 chr12 37088257 37089327 -84168203 + ORR1E-int LTR MaLR 275 1401 -179 1 867 1989 168 53 2 chr12 37089322 37089715 -84167815 - MTC LTR MaLR -8 413 1 1 867 381 335 47 7 chr12 37089718 37089868 -84167662 + ORR1E-int LTR MaLR 1389 1544 -36 1 867 549 286 60 100 chr12 37089862 37090212 -84167318 + ORR1E LTR MaLR 19 354 -5 1 108 1363 312 150 39 chr12 37091775 37094020 -84163510 - L1_Mur3 LINE L1 -719 5640 3078 1 868 975 218 19 0 chr12 37094093 37094299 -84163231 + MTC LTR MaLR 1 210 -211 1 868 5545 152 27 2 chr12 37094300 37095548 -84161982 - Lx4B LINE L1 -822 6236 4940 1 868 2182 265 39 30 chr12 37095546 37096219 -84161311 - Lx8 LINE L1 -412 7061 6383 1 868 27 29 0 0 chr12 37096438 37096472 -84161058 + AT_rich Low_complexity Low_complexity 1 34 0 1 868 1184 199 0 4 chr12 37096537 37096764 -84160766 + MTC LTR MaLR 196 421 0 1 868 251 258 131 16 chr12 37096766 37096981 -84160549 - L1M3 LINE L1 -3154 2989 2739 1 868 422 257 87 72 chr12 37096947 37097282 -84160248 - L1_Mur3 LINE L1 -3465 2415 2076 1 868 450 36 0 0 chr12 37097403 37097459 -84160071 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 868 555 302 11 70 chr12 37097467 37097652 -84159878 - B4A SINE B4 -11 281 108 1 868 341 261 39 72 chr12 37097657 37097832 -84159698 - L1M4c LINE L1 -3876 2673 2530 1 868 238 226 82 39 chr12 37097832 37097965 -84159565 + MTE2a LTR MaLR 6 147 -272 1 868 237 233 209 13 chr12 37097965 37098130 -84159400 - L1M4c LINE L1 -4041 2508 2325 1 868 322 294 15 38 chr12 37098389 37098557 -84158973 - B4A SINE B4 -1 291 131 1 868 2394 236 133 26 chr12 37098572 37099709 -84157821 - RMER1B Other Other 0 1066 1 1 868 1618 225 50 86 chr12 37099748 37100249 -84157281 - RMER1B Other Other -538 528 46 1 868 225 310 125 11 chr12 37100469 37100557 -84156973 - B4A SINE B4 -189 103 6 1 868 1945 154 33 0 chr12 37100649 37100986 -84156544 + ORR1B1 LTR MaLR 1 348 -46 1 868 1220 49 0 0 chr12 37100993 37101137 -84156393 + B1_Mus2 SINE Alu 4 147 0 1 868 261 0 0 0 chr12 37101137 37101166 -84156364 + (A)n Simple_repeat Simple_repeat 1 29 0 1 868 290 170 0 0 chr12 37101167 37101214 -84156316 + ORR1B1 LTR MaLR 313 359 -8 1 868 8150 49 7 3 chr12 37101520 37102649 -84154881 - L1Md_F2 LINE L1 -3 6579 5447 1 868 577 293 73 0 chr12 37103884 37104034 -84153496 - RSINE1 SINE B4 -2 163 3 1 868 390 189 222 0 chr12 37104055 37104145 -84153385 - PB1D9 SINE Alu -8 112 3 1 868 1632 87 4 7 chr12 37104981 37105219 -84152311 - L1_Mm LINE L1 -401 5482 5270 1 868 349 300 99 35 chr12 37105341 37105624 -84151906 - L1MA8 LINE L1 -414 5877 5577 1 868 353 187 0 0 chr12 37105631 37105705 -84151825 + ORR1B1 LTR MaLR 1 74 -320 1 868 1479 178 35 32 chr12 37105705 37106047 -84151483 + RLTR15 LTR ERVK 1 343 -16 1 868 1884 149 16 6 chr12 37106054 37106377 -84151153 + ORR1B1 LTR MaLR 69 394 0 1 868 184 219 49 0 chr12 37112245 37112286 -84145244 - L2a LINE L2 -8 3418 3376 1 868 431 302 67 0 chr12 37112675 37112794 -84144736 + B1F SINE Alu 12 138 -11 1 868 676 247 156 6 chr12 37112852 37113031 -84144499 + B3 SINE B2 1 206 -10 1 868 379 136 37 0 chr12 37113423 37113504 -84144026 + CT-rich Low_complexity Low_complexity 1 84 0 1 868 182 150 25 0 chr12 37113517 37113557 -84143973 + CT-rich Low_complexity Low_complexity 2 42 0 1 868 796 203 7 0 chr12 37113558 37113696 -84143834 - B1_Mur3 SINE Alu -6 143 5 1 868 324 348 45 85 chr12 37114658 37114859 -84142671 - ORR1E LTR MaLR -162 197 5 1 868 220 254 0 106 chr12 37115569 37115635 -84141895 - L2a LINE L2 -1 3425 3367 1 868 1017 123 0 7 chr12 37116476 37116623 -84140907 + B1_Mus2 SINE Alu 1 146 -1 1 868 243 88 0 0 chr12 37117877 37117911 -84139619 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 868 954 147 424 0 chr12 37118384 37118660 -84138870 + ORR1B1 LTR MaLR 1 394 0 1 868 996 242 89 168 chr12 37118660 37119189 -84138341 - RMER15 LTR ERVL -89 486 1 1 868 2424 218 17 23 chr12 37119377 37119902 -84137628 + RMER5 LTR ERV1 13 534 0 1 868 22 56 0 0 chr12 37119955 37119991 -84137539 + AT_rich Low_complexity Low_complexity 1 36 0 1 868 485 253 216 34 chr12 37120122 37120413 -84137117 - LTR37A LTR ERV1 0 426 83 1 868 588 321 6 36 chr12 37121075 37121240 -84136290 + B3A SINE B2 1 160 -38 1 868 387 0 0 0 chr12 37121243 37121286 -84136244 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 868 359 237 171 36 chr12 37121553 37121746 -84135784 - L1MEg LINE L1 -5140 1085 867 1 868 359 323 26 0 chr12 37121864 37122019 -84135511 - L1MEg LINE L1 -5430 689 531 1 868 38 22 0 0 chr12 37122817 37122862 -84134668 + AT_rich Low_complexity Low_complexity 1 45 0 1 868 585 353 53 75 chr12 37123086 37123502 -84134028 + MER21B LTR ERV1 65 471 -392 1 868 3820 185 77 53 chr12 37123557 37124519 -84133011 + RLTR25A LTR ERVK 1 1026 -2 1 868 2512 147 7 11 chr12 37124786 37125232 -84132298 - Lx LINE L1 -8 6646 6203 1 868 15314 154 29 21 chr12 37125232 37129010 -84128520 - L1VL4 LINE L1 -1517 4369 567 1 868 1728 221 28 14 chr12 37129330 37129692 -84127838 - ORR1B2 LTR MaLR 0 367 1 1 868 429 20 0 0 chr12 37130805 37130855 -84126675 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 868 232 258 41 51 chr12 37131213 37131311 -84126219 - MER20 DNA MER1_type -20 199 103 1 868 1190 48 0 0 chr12 37132384 37132530 -84125000 - B1_Mus2 SINE Alu 0 147 2 1 868 582 246 28 9 chr12 37132718 37132862 -84124668 - MTEb LTR MaLR -227 152 3 1 868 411 152 0 0 chr12 37133372 37133451 -84124079 + T-rich Low_complexity Low_complexity 1 79 0 1 868 489 207 0 0 chr12 37133451 37133533 -84123997 + MTD LTR MaLR 12 93 -326 1 868 499 302 14 21 chr12 37133549 37133691 -84123839 + MTD LTR MaLR 73 213 -206 1 868 480 324 68 65 chr12 37134715 37135128 -84122402 - L2 LINE L2 -745 2674 2261 1 868 329 328 45 15 chr12 37135245 37135378 -84122152 - L2 LINE L2 -1374 2045 1909 1 868 299 215 92 0 chr12 37135898 37135963 -84121567 + B1_Mur1 SINE Alu 64 134 -15 1 868 995 292 80 42 chr12 37137071 37137615 -84119915 - L1M4b LINE L1 -1823 5183 4606 1 868 1014 232 121 3 chr12 37137615 37137922 -84119608 + MER2 DNA MER2_type 3 345 0 1 868 995 292 80 42 chr12 37137922 37138254 -84119276 - L1M4b LINE L1 -2401 4605 4274 1 868 261 230 142 14 chr12 37138451 37138592 -84118938 - L1M4b LINE L1 -3246 3760 3602 1 868 2765 252 39 14 chr12 37138587 37139311 -84118219 - RMER1C Other Other 0 1342 601 1 868 7994 41 2 0 chr12 37139934 37141259 -84116271 - L1Md_F3 LINE L1 0 6584 5257 1 868 35007 62 9 5 chr12 37141259 37147455 -84110075 - L1Md_T LINE L1 0 6582 443 1 868 1307 177 38 13 chr12 37147604 37147839 -84109691 - MTC LTR MaLR 0 421 181 1 868 2273 94 0 3 chr12 37147839 37148171 -84109359 - Lx4A LINE L1 -1037 6021 5691 1 868 1065 183 149 4 chr12 37148174 37148409 -84109121 + MTC LTR MaLR 135 420 -1 1 868 600 288 84 50 chr12 37150480 37150955 -84106575 - L1M4b LINE L1 -6235 1099 609 1 868 363 369 78 34 chr12 37151183 37151452 -84106078 - L1M4b LINE L1 -7040 294 14 1 868 626 266 0 54 chr12 37152454 37152621 -84104909 - RSINE1 SINE B4 0 165 8 1 868 571 322 70 13 chr12 37153255 37153485 -84104045 - MER68 LTR ERVL -184 379 137 1 868 24 53 0 0 chr12 37153602 37153640 -84103890 + AT_rich Low_complexity Low_complexity 1 38 0 1 868 294 257 184 0 chr12 37154226 37154335 -84103195 + MTEa LTR MaLR 1 129 -230 1 868 310 254 71 50 chr12 37154507 37154622 -84102908 + MTEa LTR MaLR 262 379 0 1 868 187 387 64 29 chr12 37154663 37154836 -84102694 - L2 LINE L2 -752 2667 2489 1 868 779 118 11 22 chr12 37156364 37156546 -84100984 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 868 234 298 136 8 chr12 37156723 37156848 -84100682 - L2 LINE L2 -1041 2378 2238 1 868 726 281 214 25 chr12 37156904 37157305 -84100225 - MLT1D LTR MaLR -28 477 1 1 868 340 204 47 16 chr12 37157781 37157861 -84099669 - ID4_ SINE ID -53 99 22 1 868 198 143 0 0 chr12 37157886 37157921 -84099609 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 868 1664 216 58 97 chr12 37158540 37158971 -84098559 - MTD LTR MaLR 0 419 6 1 868 339 65 0 0 chr12 37159089 37159135 -84098395 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 868 297 282 81 9 chr12 37159308 37159419 -84098111 + L2a LINE L2 3304 3422 -4 1 868 254 171 14 0 chr12 37159485 37159555 -84097975 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 868 449 50 37 24 chr12 37159560 37159642 -84097888 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 1 868 234 269 49 49 chr12 37159668 37159750 -84097780 + ID4_ SINE ID 1 82 -1 1 868 405 0 0 0 chr12 37161385 37161430 -84096100 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 868 23 86 0 0 chr12 37162356 37162414 -84095116 + AT_rich Low_complexity Low_complexity 1 58 0 1 868 21 0 0 0 chr12 37162817 37162838 -84094692 + AT_rich Low_complexity Low_complexity 1 21 0 1 868 231 88 0 0 chr12 37162874 37162908 -84094622 + (T)n Simple_repeat Simple_repeat 1 34 0 2 868 1122 78 0 0 chr12 37163194 37163348 -84094182 + (GAAAA)n Simple_repeat Simple_repeat 4 157 0 2 868 213 362 12 0 chr12 37165349 37165429 -84092101 - ID4_ SINE ID -2 81 1 2 868 892 226 63 5 chr12 37167589 37167780 -84089750 + B3 SINE B2 8 209 -7 2 868 706 294 105 21 chr12 37169665 37169998 -84087532 - Lx8 LINE L1 0 7473 7113 2 868 670 301 72 47 chr12 37170328 37170952 -84086578 - L1M2 LINE L1 -880 5263 4624 2 868 261 0 0 0 chr12 37171047 37171076 -84086454 + (TATG)n Simple_repeat Simple_repeat 4 32 0 2 868 261 326 11 34 chr12 37171079 37171168 -84086362 - B3 SINE B2 -32 184 98 2 868 364 242 99 0 chr12 37171170 37171261 -84086269 - Lx6 LINE L1 -230 7230 7131 2 868 12412 98 18 9 chr12 37171260 37174109 -84083421 + L1Md_F2 LINE L1 203 3026 -2857 2 868 5695 95 4 0 chr12 37174114 37174948 -84082582 + L1Md_F2 LINE L1 4750 5586 -297 2 868 7130 89 8 8 chr12 37174949 37175941 -84081589 + L1Md_F2 LINE L1 5588 6579 -3 2 868 3207 225 55 6 chr12 37175942 37176720 -84080810 - Lx6 LINE L1 -317 7143 6328 2 868 1140 87 24 16 chr12 37176721 37176977 -84080553 + (TCTA)n Simple_repeat Simple_repeat 1 257 0 2 868 653 268 88 26 chr12 37176981 37177253 -84080277 - Lx6 LINE L1 -1135 6325 6037 2 868 548 255 79 5 chr12 37177563 37177752 -84079778 - L1M3 LINE L1 -1910 4230 4028 2 868 4748 271 46 35 chr12 37178059 37180483 -84077047 + L1_Mur3 LINE L1 818 3280 -2600 2 868 441 0 0 0 chr12 37180502 37180551 -84076979 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2 868 2856 220 194 6 chr12 37180617 37181586 -84075944 + L1_Mur3 LINE L1 3481 4631 -1249 2 868 1097 100 46 17 chr12 37181633 37181806 -84075724 - B2_Mm2 SINE B2 -14 181 4 2 868 376 278 99 45 chr12 37181925 37182238 -84075292 - L1MCa LINE L1 -4783 1725 1396 2 868 291 250 125 0 chr12 37182375 37182439 -84075091 - PB1D7 SINE Alu -5 115 44 2 868 48 32 0 0 chr12 37182440 37182502 -84075028 + AT_rich Low_complexity Low_complexity 1 62 0 2 868 415 298 33 0 chr12 37182531 37182652 -84074878 - RSINE1 SINE B4 -30 135 11 2 868 393 306 153 24 chr12 37182864 37183167 -84074363 - L1MCa LINE L1 -5525 983 652 2 868 243 0 0 0 chr12 37183167 37183194 -84074336 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 2 868 393 306 153 24 chr12 37183194 37183268 -84074262 - L1MCa LINE L1 -5857 651 559 2 868 40 49 0 0 chr12 37185365 37185426 -84072104 + AT_rich Low_complexity Low_complexity 1 61 0 2 868 607 127 52 43 chr12 37186119 37186234 -84071296 + PB1D9 SINE Alu 2 117 -3 2 868 247 362 75 15 chr12 37186915 37187114 -84070416 - MLT1B LTR MaLR 0 467 257 2 868 295 316 117 58 chr12 37187137 37187325 -84070205 - MLT1B LTR MaLR -186 204 6 2 868 3421 189 56 72 chr12 37187652 37188467 -84069063 + RMER1B Other Other 262 1063 -3 2 868 513 280 0 16 chr12 37188876 37189003 -84068527 - B1F2 SINE Alu -1 148 24 2 868 505 308 30 42 chr12 37189057 37189223 -84068307 - RSINE1 SINE B4 0 165 2 2 868 2910 75 2 34 chr12 37189772 37190187 -84067343 - L1_Mus2 LINE L1 -2 6564 6163 2 868 23 68 0 0 chr12 37190217 37190261 -84067269 + AT_rich Low_complexity Low_complexity 1 44 0 2 868 322 261 8 85 chr12 37190325 37190455 -84067075 - L1M4 LINE L1 -1645 4501 4382 2 868 297 272 19 10 chr12 37190875 37190979 -84066551 - L1ME1 LINE L1 -152 6027 5923 2 868 361 155 0 33 chr12 37190983 37191043 -84066487 + B1_Mus2 SINE Alu 2 59 -88 2 868 411 247 0 0 chr12 37191130 37191304 -84066226 + GA-rich Low_complexity Low_complexity 2 175 0 2 868 293 127 0 68 chr12 37191308 37191367 -84066163 + (CAGAGA)n Simple_repeat Simple_repeat 2 56 0 2 868 605 208 0 0 chr12 37191367 37191473 -84066057 + B1_Mur2 SINE Alu 40 145 -4 2 868 1317 174 76 0 chr12 37191721 37191996 -84065534 + Lx4A LINE L1 6759 7054 -4 2 868 377 325 103 33 chr12 37194086 37194299 -84063231 + HAL1 LINE L1 15 242 -2265 2 868 238 193 17 17 chr12 37194527 37194585 -84062945 + HAL1 LINE L1 648 705 -1802 2 868 350 291 103 0 chr12 37194905 37195108 -84062422 + HAL1 LINE L1 1998 2221 -286 2 868 411 339 146 0 chr12 37195113 37195352 -84062178 + HAL1 LINE L1 2067 2340 -167 2 868 558 243 25 83 chr12 37195842 37195999 -84061531 - B1_Mur1 SINE Alu 0 149 2 2 868 314 295 28 14 chr12 37196432 37196573 -84060957 + L1M2 LINE L1 5454 5596 -704 2 868 1564 177 103 3 chr12 37196832 37196916 -84060614 - RMER4A LTR ERVK 0 466 368 2 868 426 20 0 0 chr12 37196916 37196967 -84060563 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 868 1564 177 103 3 chr12 37196967 37197193 -84060337 - RMER4A LTR ERVK -99 367 126 2 868 302 225 0 40 chr12 37197193 37197267 -84060263 - RLTR31_Mm LTR ERVK 0 561 491 2 868 1844 163 100 65 chr12 37197276 37197500 -84060030 - RLTR17 LTR ERVK -277 415 169 2 868 2061 36 28 0 chr12 37197500 37197751 -84059779 - L1_Mus1 LINE L1 0 6567 6310 2 868 1844 163 100 65 chr12 37197751 37197927 -84059603 - RLTR17 LTR ERVK -524 168 1 2 868 905 115 7 0 chr12 37197927 37198044 -84059486 - RMER4A LTR ERVK -348 118 1 2 868 304 265 115 19 chr12 37198323 37198427 -84059103 - BLACKJACK DNA AcHobo -2713 231 118 2 868 255 301 0 0 chr12 37198651 37198724 -84058806 + B4A SINE B4 17 89 -203 2 868 195 269 114 13 chr12 37198997 37199076 -84058454 + L2c LINE L2 3267 3353 -34 2 868 416 268 54 0 chr12 37201296 37201408 -84056122 - B1F1 SINE Alu -31 118 1 2 868 215 268 27 40 chr12 37202888 37202962 -84054568 + CT-rich Low_complexity Low_complexity 1 73 0 2 868 253 311 26 70 chr12 37204103 37204217 -84053313 - MER20 DNA MER1_type -105 114 6 2 868 275 233 33 0 chr12 37205454 37205514 -84052016 + PB1D7 SINE Alu 1 62 -58 2 868 595 312 45 17 chr12 37205462 37205638 -84051892 + B4A SINE B4 94 274 -18 2 868 207 0 0 0 chr12 37205949 37205972 -84051558 + (A)n Simple_repeat Simple_repeat 1 23 0 2 868 881 298 119 35 chr12 37206556 37206925 -84050605 - MLT2B1 LTR ERVL -119 401 2 2 868 264 274 0 99 chr12 37206972 37207053 -84050477 - ID4 SINE ID -10 73 1 2 868 240 321 75 0 chr12 37207205 37207311 -84050219 - MIR SINE MIR -8 254 141 2 868 318 267 56 0 chr12 37207318 37207408 -84050122 - Lx8 LINE L1 -1171 6302 6208 2 868 192 291 60 48 chr12 37207924 37208007 -84049523 - MIR SINE MIR -66 196 113 2 868 556 139 39 10 chr12 37208133 37208235 -84049295 - BC1_Mm scRNA scRNA -47 105 1 2 868 1133 81 0 0 chr12 37208973 37209121 -84048409 + B1_Mus1 SINE Alu 1 148 0 2 868 213 121 0 0 chr12 37209134 37209167 -84048363 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 868 7548 46 2 1 chr12 37210597 37211566 -84045964 - L1Md_F2 LINE L1 0 6582 5613 2 868 34885 60 1 24 chr12 37212769 37218659 -84038871 + L1Md_T LINE L1 99 5586 -297 2 868 8024 56 0 0 chr12 37218659 37219709 -84037821 + L1Md_T LINE L1 5587 6582 0 2 868 334 322 24 129 chr12 37220848 37221294 -84036236 - L1MEf LINE L1 -5306 1103 716 2 868 322 244 172 8 chr12 37221652 37221780 -84035750 + L1MDb LINE L1 1050 1198 -5211 2 868 599 323 94 64 chr12 37221807 37222072 -84035458 - B4A SINE B4 -18 274 2 2 868 255 313 0 0 chr12 37222261 37222337 -84035193 - B1F1 SINE Alu -41 76 1 2 868 432 281 141 0 chr12 37222360 37222481 -84035049 - B1F1 SINE Alu -6 143 6 2 868 1253 83 39 0 chr12 37222729 37222909 -84034621 + B2_Mm2 SINE B2 2 188 -7 2 868 216 311 13 13 chr12 37223024 37223099 -84034431 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 868 248 239 95 74 chr12 37223235 37223330 -84034200 - B4A SINE B4 -190 102 6 2 869 1121 235 74 17 chr12 37225653 37226003 -84031527 + Lx5 LINE L1 6023 6392 -658 2 869 956 252 18 31 chr12 37226000 37226225 -84031305 + Lx5 LINE L1 6794 7015 -35 2 869 1101 143 11 0 chr12 37228841 37229016 -84028514 - URR1A DNA MER1_type 0 226 50 2 869 880 274 54 111 chr12 37229078 37229600 -84027930 - RLTR12B LTR ERVK -26 502 11 2 869 3286 201 103 10 chr12 37230115 37230817 -84026713 - Lx5 LINE L1 -3 7047 6281 2 869 3888 139 71 8 chr12 37230828 37231801 -84025729 + L1_Mur2 LINE L1 872 1929 -3948 2 869 6112 82 69 15 chr12 37232258 37233172 -84024358 - L1_Mur1 LINE L1 0 5886 4924 2 869 488 282 77 28 chr12 37234241 37234423 -84023107 + ORR1E LTR MaLR 7 197 -162 2 869 233 339 35 18 chr12 37234443 37234557 -84022973 + ORR1E LTR MaLR 256 371 -8 2 869 1298 311 122 50 chr12 37234555 37235678 -84021852 + ORR1E-int LTR MaLR 13 1181 -189 2 869 33 43 0 0 chr12 37237242 37237289 -84020241 + AT_rich Low_complexity Low_complexity 1 47 0 2 869 213 250 18 0 chr12 37237418 37237474 -84020056 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 869 36 94 0 0 chr12 37237720 37237826 -84019704 + AT_rich Low_complexity Low_complexity 1 106 0 2 869 21 0 0 0 chr12 37238044 37238065 -84019465 + AT_rich Low_complexity Low_complexity 1 21 0 2 869 180 0 0 0 chr12 37238403 37238423 -84019107 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 869 958 263 44 29 chr12 37238485 37238759 -84018771 - B4A SINE B4 -14 278 1 2 869 280 255 60 86 chr12 37238781 37238897 -84018633 - B1F SINE Alu -36 113 1 2 869 504 0 0 0 chr12 37240124 37240180 -84017350 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 2 869 775 72 18 26 chr12 37240183 37240297 -84017233 - PB1D9 SINE Alu -7 113 1 2 869 706 332 24 35 chr12 37240347 37240634 -84016896 + B4 SINE B4 2 285 -7 2 869 255 287 101 34 chr12 37242998 37243146 -84014384 - MIR SINE MIR -90 172 15 2 869 507 33 0 0 chr12 37244145 37244206 -84013324 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 869 4859 169 18 5 chr12 37244320 37245147 -84012383 - Lx5 LINE L1 0 7050 6213 2 869 7642 52 1 4 chr12 37245866 37246820 -84010710 - L1Md_F2 LINE L1 -12 6570 5620 2 869 23 78 0 0 chr12 37247177 37247228 -84010302 + AT_rich Low_complexity Low_complexity 1 51 0 2 869 407 235 25 34 chr12 37247355 37247474 -84010056 - PB1D9 SINE Alu 0 120 3 2 869 23 0 0 0 chr12 37247802 37247825 -84009705 + AT_rich Low_complexity Low_complexity 1 23 0 2 869 261 0 0 0 chr12 37249097 37249126 -84008404 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 869 2258 43 7 0 chr12 37249168 37249449 -84008081 + L1Md_F2 LINE L1 6300 6582 0 2 869 5400 62 1 6 chr12 37250986 37251689 -84005841 - L1Md_F3 LINE L1 0 6584 5885 2 869 30 27 0 0 chr12 37251911 37251948 -84005582 + AT_rich Low_complexity Low_complexity 1 37 0 3 869 21 0 0 0 chr12 37252358 37252379 -84005151 + AT_rich Low_complexity Low_complexity 1 21 0 3 869 289 276 145 52 chr12 37252940 37253112 -84004418 - Lx8 LINE L1 -147 7326 7139 3 869 249 224 35 0 chr12 37253770 37253828 -84003702 - Lx8 LINE L1 -1567 5906 5847 3 869 2085 310 94 25 chr12 37253849 37255241 -84002289 - L1M2 LINE L1 -1056 5087 3600 3 869 303 28 0 0 chr12 37255251 37255287 -84002243 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 869 369 342 104 14 chr12 37255489 37255711 -84001819 - Tigger5 DNA MER2_type -2164 242 1 3 869 258 299 49 5 chr12 37256725 37256854 -84000676 - MIRm SINE MIR -128 148 8 3 869 333 176 12 55 chr12 37258562 37258989 -83998541 + (TA)n Simple_repeat Simple_repeat 1 408 0 3 869 33 56 0 0 chr12 37259104 37259158 -83998372 + AT_rich Low_complexity Low_complexity 1 54 0 3 869 1075 136 126 34 chr12 37260054 37260260 -83997270 - URR1A DNA MER1_type -1 225 1 3 869 715 182 14 42 chr12 37260396 37260521 -83997009 + B1_Mur1 SINE Alu 11 136 -13 3 869 4662 100 9 9 chr12 37260521 37261178 -83996352 - Lx3B LINE L1 0 6973 6317 3 869 715 182 14 42 chr12 37261178 37261195 -83996335 + B1_Mur1 SINE Alu 137 149 0 3 869 618 308 61 18 chr12 37261257 37261535 -83995995 - Tigger10 DNA Tigger -776 1067 778 3 869 548 344 83 34 chr12 37262667 37262932 -83994598 + MTE-int LTR MaLR 40 317 -1263 3 869 820 234 47 28 chr12 37263248 37263459 -83994071 - B3 SINE B2 0 216 2 3 869 1693 125 124 10 chr12 37263491 37263837 -83993693 - ORR1A4 LTR MaLR -10 384 1 3 869 625 288 11 5 chr12 37263996 37264181 -83993349 + L1_Mur3 LINE L1 52 237 -7491 3 869 2161 184 26 55 chr12 37264237 37264691 -83992839 - RLTR31A_Mm LTR ERVK -143 441 1 3 869 2947 281 68 25 chr12 37264700 37265895 -83991635 + L1_Mur3 LINE L1 19 1019 -6709 3 869 198 0 0 0 chr12 37266514 37266536 -83990994 + (A)n Simple_repeat Simple_repeat 1 22 0 3 869 1621 166 37 18 chr12 37266536 37266985 -83990545 + L1_Mur3 LINE L1 1006 1465 -4415 3 869 1760 147 134 9 chr12 37266985 37267329 -83990201 + ORR1B1 LTR MaLR 1 387 -7 3 869 4206 179 37 9 chr12 37267370 37268253 -83989277 + L1_Mur3 LINE L1 3167 4074 -1806 3 869 2000 217 23 55 chr12 37268244 37268756 -83988774 + Lx6 LINE L1 5632 6127 -1333 3 869 351 0 0 0 chr12 37268762 37268801 -83988729 + (TAA)n Simple_repeat Simple_repeat 3 41 0 3 869 344 333 113 23 chr12 37268876 37269177 -83988353 + L1M2 LINE L1 2401 2728 -3415 3 869 288 324 72 114 chr12 37269700 37269937 -83987593 + Tigger5 DNA MER2_type 1 227 -2179 3 869 267 274 77 34 chr12 37269937 37270054 -83987476 + Tigger5 DNA MER2_type 2285 2406 0 3 869 866 258 26 0 chr12 37270348 37270538 -83986992 + B3 SINE B2 7 201 -15 3 869 476 59 0 14 chr12 37270590 37270659 -83986871 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 869 255 221 0 0 chr12 37271068 37271136 -83986394 + T-rich Low_complexity Low_complexity 1 68 0 3 869 27 62 0 0 chr12 37271370 37271418 -83986112 + AT_rich Low_complexity Low_complexity 1 48 0 3 869 24 0 0 0 chr12 37271947 37271971 -83985559 + AT_rich Low_complexity Low_complexity 1 24 0 3 869 919 189 82 0 chr12 37273455 37273661 -83983869 - URR1B DNA MER1_type -1 224 2 3 869 861 212 65 0 chr12 37273742 37273926 -83983604 - RMER1C Other Other -20 1322 1127 3 869 201 132 0 0 chr12 37275027 37275065 -83982465 + (TAAAAA)n Simple_repeat Simple_repeat 3 40 0 3 869 771 326 11 15 chr12 37275085 37275359 -83982171 - Lx9 LINE L1 -592 7052 6780 3 869 1325 301 36 29 chr12 37275374 37275925 -83981605 + Lx9 LINE L1 7067 7621 -23 3 869 645 228 58 185 chr12 37276615 37276820 -83980710 + B3A SINE B2 6 184 -11 3 869 373 270 104 44 chr12 37277539 37277721 -83979809 - MER53 DNA hAT 0 193 1 3 869 402 302 9 0 chr12 37278627 37278733 -83978797 + PB1D10 SINE Alu 1 107 -10 3 869 558 79 0 0 chr12 37279057 37279133 -83978397 + (TAA)n Simple_repeat Simple_repeat 3 78 0 3 869 801 150 64 0 chr12 37279193 37279333 -83978197 - B1_Mur4 SINE Alu 0 150 2 3 869 1026 199 55 19 chr12 37280012 37280244 -83977286 + RMER4B LTR ERVK 17 257 -328 3 869 216 86 0 0 chr12 37280244 37280279 -83977251 + (CTG)n Simple_repeat Simple_repeat 2 36 0 3 869 1026 266 65 65 chr12 37280279 37280498 -83977032 + RMER4B LTR ERVK 255 466 0 3 869 349 182 20 0 chr12 37280685 37280784 -83976746 + CT-rich Low_complexity Low_complexity 2 102 0 3 869 526 101 13 0 chr12 37281628 37281707 -83975823 - Lx2 LINE L1 -587 6410 6331 3 869 3740 134 10 0 chr12 37281707 37282289 -83975241 + Lx2B LINE L1 6413 7000 0 3 869 186 250 48 32 chr12 37282885 37282947 -83974583 + L4 LINE RTE 47 109 -1920 3 869 274 205 0 24 chr12 37283073 37283158 -83974372 + CT-rich Low_complexity Low_complexity 3 85 0 3 869 587 315 35 24 chr12 37285843 37286012 -83971518 + B3A SINE B2 1 171 -27 3 869 312 231 0 0 chr12 37286285 37286363 -83971167 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 869 234 267 100 16 chr12 37286392 37286582 -83970948 - Lx9 LINE L1 -20 7624 7419 3 869 859 274 83 18 chr12 37286565 37286892 -83970638 - Lx9 LINE L1 -127 7517 7170 3 869 481 302 64 27 chr12 37286895 37287082 -83970448 + Lx7 LINE L1 5594 5787 -1909 3 869 922 229 9 78 chr12 37288527 37288759 -83968771 + B3 SINE B2 1 216 0 3 869 193 282 59 0 chr12 37289768 37289853 -83967677 + L2a LINE L2 3333 3422 -4 3 869 320 343 49 29 chr12 37290120 37290363 -83967167 + L1M5 LINE L1 3895 4142 -2004 3 869 208 95 45 45 chr12 37291189 37291233 -83966297 + A-rich Low_complexity Low_complexity 3 46 0 3 869 736 307 96 17 chr12 37291887 37292188 -83965342 - MER67B LTR ERV1 -2 659 335 3 869 234 188 15 30 chr12 37292740 37292806 -83964724 + T-rich Low_complexity Low_complexity 3 67 0 3 869 1103 70 7 0 chr12 37292809 37292952 -83964578 - B1_Mus1 SINE Alu -2 146 3 3 869 249 358 23 52 chr12 37295524 37295698 -83961832 - MLT2C2 LTR ERVL -194 220 52 3 869 705 249 15 95 chr12 37296681 37296719 -83960811 - B3 SINE B2 -21 195 166 3 869 423 0 0 0 chr12 37296719 37296766 -83960764 + (TATG)n Simple_repeat Simple_repeat 4 50 0 3 869 705 249 15 95 chr12 37296766 37296927 -83960603 - B3 SINE B2 -51 165 12 3 869 259 327 91 66 chr12 37297707 37297828 -83959702 - B4 SINE B4 -4 288 165 3 869 3008 111 2 0 chr12 37297832 37298257 -83959273 - L1_Mm LINE L1 -97 5786 5361 3 869 3745 160 3 47 chr12 37298255 37298881 -83958649 + L1_Mur2 LINE L1 4672 5297 -580 3 869 1081 70 7 0 chr12 37298881 37299023 -83958507 + B1_Mus1 SINE Alu 1 143 -5 3 869 3745 160 3 47 chr12 37299023 37299118 -83958412 + L1_Mur2 LINE L1 5298 5361 -516 3 869 21 82 0 0 chr12 37299603 37299652 -83957878 + AT_rich Low_complexity Low_complexity 1 49 0 3 869 5269 67 13 1 chr12 37299721 37300423 -83957107 - L1_Mus3 LINE L1 -5 6633 5924 3 869 219 69 0 0 chr12 37301522 37301551 -83955979 + (T)n Simple_repeat Simple_repeat 1 29 0 3 869 8090 91 54 12 chr12 37301568 37303152 -83954378 - Lx3A LINE L1 -9 6972 5306 3 869 396 290 55 102 chr12 37304274 37304305 -83953225 - RLTR15 LTR ERVK -15 344 314 3 869 1857 123 33 42 chr12 37304305 37304637 -83952893 - ORR1A4 LTR MaLR 0 329 1 3 869 396 290 55 102 chr12 37304637 37304966 -83952564 - RLTR15 LTR ERVK -46 313 1 3 869 1160 62 0 0 chr12 37306847 37306992 -83950538 + B1_Mm SINE Alu 2 146 -1 3 869 229 66 82 0 chr12 37306997 37307058 -83950472 + (CAA)n Simple_repeat Simple_repeat 2 67 0 3 869 624 244 55 4 chr12 37307058 37307256 -83950274 + L1MA6 LINE L1 5386 5594 -703 3 869 2619 99 10 30 chr12 37307256 37307660 -83949870 + L1_Mus2 LINE L1 6171 6566 0 3 869 614 255 60 23 chr12 37307660 37307678 -83949852 + L1MA6 LINE L1 5595 5610 -687 3 869 917 320 136 14 chr12 37307682 37308043 -83949487 + Lx4B LINE L1 6549 6953 -105 3 869 605 297 88 102 chr12 37308150 37308428 -83949102 + L1MA6 LINE L1 5671 5951 -349 3 869 387 0 0 0 chr12 37308428 37308471 -83949059 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 869 486 0 0 0 chr12 37308471 37308524 -83949006 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 869 605 297 88 102 chr12 37308524 37308881 -83948649 + L1MA6 LINE L1 5952 6297 -3 3 869 456 35 0 0 chr12 37309190 37309248 -83948282 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 869 483 18 0 0 chr12 37310092 37310148 -83947382 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 869 780 283 121 19 chr12 37310369 37310625 -83946905 - B4 SINE B4 -10 282 1 3 869 624 242 33 7 chr12 37311046 37311196 -83946334 + B3A SINE B2 3 156 -42 3 869 441 0 0 0 chr12 37311209 37311258 -83946272 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 869 294 158 0 0 chr12 37312714 37312734 -83944796 + T-rich Low_complexity Low_complexity 60 79 0 3 869 1069 88 0 7 chr12 37312734 37312883 -83944647 - B1_Mus1 SINE Alu 0 148 1 3 869 294 158 0 0 chr12 37312883 37312938 -83944592 + T-rich Low_complexity Low_complexity 5 59 0 3 869 226 146 49 0 chr12 37312952 37312993 -83944537 + MTD LTR MaLR 1 43 -378 3 869 288 0 0 0 chr12 37312996 37313028 -83944502 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 869 669 261 216 20 chr12 37313052 37313306 -83944224 + MTD LTR MaLR 103 406 -13 3 869 521 175 241 7 chr12 37313548 37313695 -83943835 - Lx3C LINE L1 -13 6987 6787 3 869 304 258 134 56 chr12 37313697 37314017 -83943513 - L1MD LINE L1 -2313 5682 5338 3 869 21724 140 22 20 chr12 37314030 37318681 -83938849 - L1_Mus4 LINE L1 -2 6634 1979 3 869 3629 150 65 15 chr12 37318682 37319635 -83937895 - L1VL4 LINE L1 -2376 1183 183 3 869 302 367 9 0 chr12 37319795 37319904 -83937626 - MER2B DNA MER2_type -14 322 213 3 869 239 286 136 0 chr12 37320169 37320316 -83937214 - L1M2 LINE L1 -1107 5036 4870 3 869 21 0 0 0 chr12 37320694 37320715 -83936815 + AT_rich Low_complexity Low_complexity 1 21 0 3 869 309 208 33 11 chr12 37321199 37321303 -83936227 - L1M3 LINE L1 -707 5476 5366 3 869 282 29 0 0 chr12 37321319 37321354 -83936176 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 869 305 333 0 0 chr12 37321358 37321436 -83936094 - 5S rRNA rRNA -34 87 10 3 869 441 0 0 0 chr12 37321605 37321654 -83935876 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 869 444 216 0 0 chr12 37321654 37321756 -83935774 + (TG)n Simple_repeat Simple_repeat 2 103 0 3 869 198 71 0 0 chr12 37321953 37321981 -83935549 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 3 869 426 280 24 60 chr12 37321990 37322157 -83935373 - RSINE1 SINE B4 0 165 5 3 869 250 331 94 0 chr12 37323054 37323181 -83934349 - B1F2 SINE Alu 0 149 11 4 869 248 77 0 25 chr12 37323852 37323892 -83933638 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 869 284 252 110 31 chr12 37324088 37324215 -83933315 + MER58A DNA MER1_type 86 222 -2 4 869 1334 218 132 24 chr12 37324456 37324828 -83932702 + MTD LTR MaLR 3 414 -5 4 869 1062 214 9 18 chr12 37325108 37325336 -83932194 - URR1A DNA MER1_type 0 226 1 4 869 1371 100 1 0 chr12 37325648 37325858 -83931672 - L1_Mus3 LINE L1 -455 6111 5899 4 869 4230 169 71 20 chr12 37326956 37327812 -83929718 - RLTR25B LTR ERVK 0 1028 129 4 869 4575 100 12 1 chr12 37327812 37328843 -83928687 - L1_Mus3 LINE L1 -433 6205 5158 4 869 2991 98 9 0 chr12 37328843 37329263 -83928267 + L1_Mus3 LINE L1 6209 6632 -6 4 869 591 230 14 35 chr12 37329285 37329429 -83928101 - RLTR25B LTR ERVK -962 141 1 4 869 2695 204 35 28 chr12 37330536 37331142 -83926388 - RMER19C LTR ERVK 0 611 2 4 869 683 218 236 0 chr12 37331142 37331307 -83926223 - B3 SINE B2 -11 205 2 4 869 734 287 61 11 chr12 37332742 37332828 -83924702 + B4A SINE B4 2 90 -202 4 869 443 18 0 18 chr12 37332828 37332885 -83924645 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 4 869 735 287 61 11 chr12 37332885 37333062 -83924468 + B4A SINE B4 91 278 -14 4 869 324 297 81 0 chr12 37333170 37333281 -83924249 - RMER15 LTR ERVL 0 575 456 4 869 1097 236 44 113 chr12 37333562 37333968 -83923562 + MTE2a LTR MaLR 2 379 0 4 869 333 0 0 0 chr12 37334015 37334052 -83923478 + (T)n Simple_repeat Simple_repeat 1 37 0 4 869 3012 78 2 5 chr12 37334617 37335014 -83922516 - MTA_Mm LTR MaLR 0 396 1 4 869 7605 77 9 69 chr12 37335014 37336183 -83921347 - MTA_Mm-int LTR MaLR 0 1098 1 4 869 2977 71 8 8 chr12 37336183 37336579 -83920951 - MTA_Mm LTR MaLR 0 396 1 4 869 210 154 0 0 chr12 37338159 37338198 -83919332 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 869 402 74 0 0 chr12 37338364 37338418 -83919112 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 869 432 158 0 0 chr12 37338702 37338778 -83918752 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 869 278 350 73 24 chr12 37338782 37338946 -83918584 - B4A SINE B4 -118 174 3 4 869 180 303 91 118 chr12 37339297 37339484 -83918046 + MIR SINE MIR 35 216 -46 4 869 1983 264 60 83 chr12 37339557 37340329 -83917201 + RMER1C Other Other 586 1339 -3 4 869 2348 154 47 2 chr12 37340432 37340835 -83916695 + MTC LTR MaLR 1 421 0 4 869 1234 305 113 24 chr12 37341376 37342121 -83915409 - Lx8 LINE L1 -61 7412 6602 4 869 360 143 0 0 chr12 37342392 37342476 -83915054 + (TTTG)n Simple_repeat Simple_repeat 1 84 0 4 869 2374 94 74 30 chr12 37342557 37342951 -83914579 + IAPLTR2_Mm LTR ERVK 1 411 0 4 869 256 79 0 0 chr12 37342953 37342991 -83914539 + IAPEz-int LTR ERVK 3 40 -1947 4 869 917 111 27 86 chr12 37342991 37343178 -83914352 + IAPEz-int LTR ERVK 18 193 -6288 4 869 226 327 0 0 chr12 37343178 37343233 -83914297 + RLTR27 LTR ERVK 221 275 -34 4 869 3634 65 2 18 chr12 37343233 37343736 -83913794 + IAPEz-int LTR ERVK 168 662 -5819 4 869 2089 72 0 0 chr12 37343736 37344014 -83913516 + IAPEz-int LTR ERVK 1359 1636 -4845 4 869 5746 43 3 19 chr12 37344013 37344769 -83912761 + IAPEz-int LTR ERVK 5736 6479 -2 4 869 2476 93 167 2 chr12 37344771 37345179 -83912351 + IAPLTR2_Mm LTR ERVK 1 475 0 4 869 24 0 0 0 chr12 37346164 37346188 -83911342 + AT_rich Low_complexity Low_complexity 1 24 0 4 869 855 326 89 44 chr12 37346425 37347483 -83910047 - Lx8 LINE L1 -28 7445 6308 4 869 718 29 0 87 chr12 37347497 37347612 -83909918 + L1_Mus2 LINE L1 6462 6566 0 4 869 22 0 0 0 chr12 37349507 37349529 -83908001 + AT_rich Low_complexity Low_complexity 1 22 0 4 869 220 191 0 0 chr12 37349541 37349583 -83907947 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 869 469 299 27 75 chr12 37349584 37349772 -83907758 - B3A SINE B2 -15 183 5 4 869 273 57 0 0 chr12 37350132 37350167 -83907363 + (A)n Simple_repeat Simple_repeat 1 35 0 4 869 342 0 0 0 chr12 37351461 37351499 -83906031 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 869 256 315 144 11 chr12 37351515 37351605 -83905925 - ID_B1 SINE B4 -20 204 103 4 869 338 258 6 0 chr12 37351906 37352065 -83905465 + (TG)n Simple_repeat Simple_repeat 2 161 0 4 869 381 22 0 0 chr12 37352065 37352111 -83905419 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 869 28 86 0 0 chr12 37352189 37352259 -83905271 + AT_rich Low_complexity Low_complexity 1 70 0 4 869 546 16 0 0 chr12 37353244 37353307 -83904223 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 869 658 296 88 40 chr12 37353401 37353753 -83903777 - Lx9 LINE L1 -475 7169 6801 4 869 775 249 96 36 chr12 37353765 37354406 -83903124 + Lx9 LINE L1 5277 6008 -1636 4 869 360 0 0 0 chr12 37354586 37354626 -83902904 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 869 282 159 0 0 chr12 37354639 37354708 -83902822 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 4 869 182 136 0 22 chr12 37354720 37354765 -83902765 + GA-rich Low_complexity Low_complexity 1 44 0 4 869 619 291 162 6 chr12 37354772 37355087 -83902443 + Lx9 LINE L1 6204 6567 -906 4 870 1397 40 0 0 chr12 37355673 37355846 -83901684 + L1Md_T LINE L1 5414 5586 -297 4 870 8454 32 1 0 chr12 37355846 37356841 -83900689 + L1Md_T LINE L1 5587 6582 0 4 870 30 45 0 43 chr12 37356870 37356940 -83900590 + AT_rich Low_complexity Low_complexity 1 67 0 4 870 540 149 0 0 chr12 37358002 37358096 -83899434 + (TCC)n Simple_repeat Simple_repeat 3 96 0 4 870 752 314 19 42 chr12 37358096 37358312 -83899218 - ID_B1 SINE B4 -13 211 1 4 870 473 332 37 13 chr12 37359262 37359561 -83897969 - L1M2 LINE L1 -532 5780 5475 4 870 5999 152 49 13 chr12 37359680 37360750 -83896780 - Lx2B LINE L1 -4 6996 5889 4 870 879 316 77 10 chr12 37360773 37361252 -83896278 - L1M2 LINE L1 -1221 4922 4412 4 870 542 239 42 14 chr12 37361269 37361413 -83896117 - B1_Mur2 SINE Alu -1 148 1 4 870 32114 74 6 6 chr12 37361427 37364571 -83892959 - L1Md_F2 LINE L1 0 6585 3454 4 870 1704 58 0 4 chr12 37364571 37364796 -83892734 - L1Md_F3 LINE L1 0 6584 6361 4 870 32114 78 7 8 chr12 37364796 37367046 -83890484 - L1Md_F2 LINE L1 -2433 3453 1098 4 870 2959 102 4 47 chr12 37367153 37367618 -83889912 - L1_Mus1 LINE L1 -1 6566 6122 4 870 1682 117 4 0 chr12 37367620 37367886 -83889644 + L1_Mus1 LINE L1 5810 6076 -491 4 870 1108 82 0 14 chr12 37367888 37368036 -83889494 - B1_Mus2 SINE Alu 0 147 2 4 870 339 322 168 30 chr12 37368043 37368473 -83889057 - L1M2 LINE L1 -1888 4255 3767 4 870 2239 319 32 46 chr12 37368784 37369893 -83887637 - Lx9 LINE L1 -201 7443 6350 4 870 600 276 82 6 chr12 37369947 37370129 -83887401 - MTD LTR MaLR -223 196 1 4 870 285 256 49 0 chr12 37372395 37372477 -83885053 - PB1D7 SINE Alu 0 120 35 4 870 483 293 0 33 chr12 37372842 37372962 -83884568 - ID_B1 SINE B4 -1 223 108 4 870 411 21 0 0 chr12 37372962 37373010 -83884520 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 870 755 193 27 14 chr12 37373650 37373797 -83883733 + B1_Mur1 SINE Alu 1 149 0 4 870 292 193 28 28 chr12 37375280 37375424 -83882106 + (CATA)n Simple_repeat Simple_repeat 1 144 0 4 870 474 157 0 0 chr12 37375622 37375705 -83881825 + T-rich Low_complexity Low_complexity 1 83 0 4 870 950 80 0 0 chr12 37375705 37375830 -83881700 - B1_Mus1 SINE Alu 0 148 24 4 870 791 304 79 18 chr12 37376025 37376366 -83881164 - MLT1A0 LTR MaLR 0 365 4 4 870 4626 205 40 46 chr12 37376431 37376663 -83880867 + Lx7 LINE L1 6575 6801 -895 4 870 903 246 226 72 chr12 37376663 37377123 -83880407 + MT2A LTR ERVL 3 533 0 4 870 4626 205 40 46 chr12 37377123 37378019 -83879511 + Lx7 LINE L1 6802 7696 0 4 870 22 0 0 0 chr12 37378113 37378135 -83879395 + AT_rich Low_complexity Low_complexity 1 22 0 4 870 572 274 59 19 chr12 37378369 37378610 -83878920 + B4A SINE B4 7 284 -8 4 870 982 132 4 24 chr12 37378623 37378871 -83878659 + CT-rich Low_complexity Low_complexity 1 242 0 4 870 696 280 23 11 chr12 37379194 37379371 -83878159 + B3A SINE B2 4 182 -16 4 870 24 0 0 0 chr12 37379383 37379407 -83878123 + AT_rich Low_complexity Low_complexity 1 24 0 4 870 261 0 0 0 chr12 37380533 37380562 -83876968 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 870 1022 278 44 10 chr12 37381254 37381548 -83875982 + MTE2b LTR MaLR 74 377 -2 4 870 1452 315 65 61 chr12 37381599 37382364 -83875166 - MLT1A-int LTR MaLR -960 775 8 4 870 231 279 29 0 chr12 37382382 37382450 -83875080 - MLT1A LTR MaLR -12 396 327 4 870 819 310 48 4 chr12 37382502 37382774 -83874756 - B4A SINE B4 -3 289 6 4 870 323 362 52 28 chr12 37382883 37383096 -83874434 - MLT1A LTR MaLR -156 218 1 4 870 378 0 0 0 chr12 37384325 37384367 -83873163 + (TGG)n Simple_repeat Simple_repeat 3 44 0 4 870 319 280 11 21 chr12 37386033 37386128 -83871402 - MTEb LTR MaLR -14 365 272 4 870 655 271 26 6 chr12 37386446 37386602 -83870928 - RSINE1 SINE B4 -5 160 2 4 870 248 70 23 0 chr12 37386617 37386660 -83870870 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 870 647 115 28 97 chr12 37386662 37386806 -83870724 - RLTRETN_Mm LTR ERVK -116 206 73 4 870 3656 250 63 42 chr12 37386818 37388253 -83869277 - Lx5 LINE L1 -16 7444 5577 4 870 1851 220 62 14 chr12 37388253 37388756 -83868774 - RLTR11A2 LTR ERVK 0 527 1 4 870 2382 191 6 41 chr12 37388756 37388953 -83868577 - Lx5 LINE L1 -304 5576 5381 4 870 2775 195 121 37 chr12 37388966 37389595 -83867935 - RMER19B LTR ERVK -12 890 209 4 870 372 320 16 8 chr12 37389602 37389731 -83867799 - Tigger5 DNA MER2_type -2276 130 1 4 870 22 70 0 0 chr12 37390177 37390220 -83867310 + AT_rich Low_complexity Low_complexity 1 43 0 4 870 989 154 27 6 chr12 37391427 37391439 -83866091 - Lx3A LINE L1 0 6981 6970 4 870 243 0 0 0 chr12 37391439 37391466 -83866064 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 4 870 989 154 27 6 chr12 37391466 37391636 -83865894 - Lx3A LINE L1 -12 6969 6795 4 870 326 278 68 3 chr12 37391978 37392154 -83865376 + L1MA4 LINE L1 5746 5932 -368 4 870 270 0 0 0 chr12 37394126 37394156 -83863374 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 870 499 259 7 62 chr12 37395090 37395234 -83862296 + B1F SINE Alu 14 149 0 4 870 282 293 73 91 chr12 37395260 37395425 -83862105 - MER31B LTR ERV1 -178 288 127 4 870 243 0 0 0 chr12 37395791 37395818 -83861712 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 870 292 330 101 86 chr12 37396695 37396706 -83860824 - B4A SINE B4 -2 290 281 4 870 522 31 0 0 chr12 37396706 37396770 -83860760 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 870 292 330 101 86 chr12 37396770 37396967 -83860563 - B4A SINE B4 -12 280 79 4 870 1427 270 35 16 chr12 37397151 37397524 -83860006 + MTD LTR MaLR 26 405 -14 4 870 401 335 128 12 chr12 37397745 37398002 -83859528 - L1MC4 LINE L1 -5516 699 413 4 870 1490 167 15 0 chr12 37398444 37398714 -83858816 - Lx2A1 LINE L1 -5 7003 6730 4 870 24 32 0 0 chr12 37398795 37398826 -83858704 + AT_rich Low_complexity Low_complexity 1 31 0 4 870 32 0 0 0 chr12 37398963 37398995 -83858535 + AT_rich Low_complexity Low_complexity 1 32 0 5 870 739 181 0 0 chr12 37399011 37399127 -83858403 - B3 SINE B2 -99 117 2 5 870 21 0 0 0 chr12 37399188 37399209 -83858321 + AT_rich Low_complexity Low_complexity 1 21 0 5 870 391 333 120 45 chr12 37399246 37399347 -83858183 - L1MEd LINE L1 -4720 1505 1395 5 870 444 19 0 0 chr12 37399347 37399400 -83858130 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 870 457 331 101 32 chr12 37399400 37399782 -83857748 - L1MEd LINE L1 -4831 1394 960 5 870 1091 73 0 0 chr12 37400080 37400217 -83857313 + B1_Mus1 SINE Alu 2 138 -10 5 870 234 0 0 0 chr12 37400217 37400243 -83857287 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 870 195 42 0 0 chr12 37401320 37401344 -83856186 + (CAGAC)n Simple_repeat Simple_repeat 1 24 0 5 870 180 0 0 0 chr12 37401344 37401364 -83856166 + (T)n Simple_repeat Simple_repeat 1 20 0 5 870 180 0 0 0 chr12 37401401 37401421 -83856109 + (T)n Simple_repeat Simple_repeat 1 20 0 5 870 246 32 0 0 chr12 37401594 37401625 -83855905 + (A)n Simple_repeat Simple_repeat 1 31 0 5 870 369 258 106 40 chr12 37401802 37402000 -83855530 + B3 SINE B2 2 212 -4 5 870 690 296 34 10 chr12 37402145 37402353 -83855177 - B3 SINE B2 -3 213 1 5 870 456 349 10 72 chr12 37402615 37402822 -83854708 - RMER30 DNA MER1_type -3 199 6 5 870 1478 265 157 38 chr12 37403592 37403688 -83853842 - RMER1B Other Other 0 1066 938 5 870 459 0 0 0 chr12 37403688 37403739 -83853791 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 870 2336 283 58 44 chr12 37403739 37405413 -83852117 - RMER1A Other Other -162 868 1 5 870 3286 21 37 3 chr12 37405697 37406080 -83851450 - MTA_Mm LTR MaLR 0 396 1 5 870 8997 37 4 2 chr12 37406082 37407176 -83850354 - MTA_Mm-int LTR MaLR -2 1096 1 5 870 3306 18 37 3 chr12 37407176 37407559 -83849971 - MTA_Mm LTR MaLR 0 396 1 5 870 183 80 0 0 chr12 37407567 37407592 -83849938 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 5 870 191 308 38 19 chr12 37408077 37408130 -83849400 - L2b LINE L2 -6 3369 3316 5 870 377 86 17 0 chr12 37408243 37408301 -83849229 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 870 209 208 0 0 chr12 37408462 37408510 -83849020 + T-rich Low_complexity Low_complexity 1 48 0 5 870 849 118 0 0 chr12 37409983 37410110 -83847420 - B1_Mus2 SINE Alu 0 147 21 5 870 603 235 29 6 chr12 37410119 37410290 -83847240 + RMER1C Other Other 1160 1334 -8 5 870 1169 190 103 70 chr12 37410516 37410623 -83846907 + ORR1D1 LTR MaLR 1 98 -276 5 870 1149 123 16 36 chr12 37410623 37410817 -83846713 + B2_Mm2 SINE B2 1 190 -5 5 870 1169 190 103 70 chr12 37410817 37411009 -83846521 + ORR1D1 LTR MaLR 99 310 -64 5 870 3231 262 43 33 chr12 37411009 37412068 -83845462 + Lx9 LINE L1 6402 7471 -173 5 870 324 70 0 0 chr12 37412068 37412111 -83845419 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 870 26 30 0 0 chr12 37412198 37412231 -83845299 + AT_rich Low_complexity Low_complexity 1 33 0 5 870 234 0 0 0 chr12 37412272 37412298 -83845232 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 870 1203 192 134 181 chr12 37412913 37413472 -83844058 - MT2A LTR ERVL 0 533 1 5 870 345 261 1 0 chr12 37413889 37413972 -83843558 - B3A SINE B2 -114 84 2 5 870 319 282 40 0 chr12 37414543 37414667 -83842863 - L1MEg LINE L1 -5139 945 817 5 870 21 0 0 0 chr12 37416151 37416172 -83841358 + AT_rich Low_complexity Low_complexity 1 21 0 5 870 268 278 81 40 chr12 37416688 37416827 -83840703 - MIR SINE MIR -122 146 4 5 870 1589 220 90 6 chr12 37417616 37417813 -83839717 - ORR1B1 LTR MaLR -8 386 188 5 870 223 0 0 98 chr12 37417813 37417854 -83839676 + (CAGAGA)n Simple_repeat Simple_repeat 2 38 0 5 870 1589 220 90 6 chr12 37417854 37418012 -83839518 - ORR1B1 LTR MaLR -207 187 2 5 870 23 33 0 0 chr12 37418808 37418838 -83838692 + AT_rich Low_complexity Low_complexity 1 30 0 5 870 626 341 81 33 chr12 37419249 37419522 -83838008 + B4A SINE B4 3 288 -4 5 870 513 0 0 0 chr12 37419569 37419626 -83837904 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 870 313 307 50 96 chr12 37420127 37420381 -83837149 - MIR SINE MIR 0 262 22 5 870 1123 62 7 0 chr12 37420550 37420695 -83836835 + B1_Mus2 SINE Alu 1 146 -1 5 870 210 105 0 0 chr12 37420704 37420742 -83836788 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 5 870 23 0 0 0 chr12 37422338 37422361 -83835169 + AT_rich Low_complexity Low_complexity 1 23 0 5 870 1067 83 14 14 chr12 37423007 37423154 -83834376 + B1_Mus2 SINE Alu 1 147 0 5 870 339 85 0 0 chr12 37423154 37423201 -83834329 + (A)n Simple_repeat Simple_repeat 1 47 0 5 870 1221 233 30 10 chr12 37424022 37424327 -83833203 - RLTR23 LTR ERV1 0 430 89 5 870 182 22 62 62 chr12 37424335 37424383 -83833147 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 5 870 464 163 163 0 chr12 37424397 37424483 -83833047 - RLTR23 LTR ERV1 -325 105 6 5 870 217 132 0 0 chr12 37424682 37424720 -83832810 + (A)n Simple_repeat Simple_repeat 1 38 0 5 870 9681 70 1 6 chr12 37424854 37426843 -83830687 - L1Md_F2 LINE L1 -12 6570 4599 5 870 201 186 23 0 chr12 37428248 37428291 -83829239 + CT-rich Low_complexity Low_complexity 3 46 0 5 870 2909 86 110 0 chr12 37428300 37428729 -83828801 - Lx3_Mus LINE L1 -11 6998 6523 5 870 234 0 0 0 chr12 37428729 37428755 -83828775 + (T)n Simple_repeat Simple_repeat 1 26 0 5 870 6180 43 18 8 chr12 37428759 37429549 -83827981 + RLTR13C2 LTR ERVK 11 808 0 5 870 4140 104 68 1 chr12 37429549 37430211 -83827319 - Lx3_Mus LINE L1 -499 6510 5805 5 870 645 104 0 30 chr12 37430204 37430303 -83827227 + Lx3A LINE L1 5717 5812 -1169 5 870 22 0 0 0 chr12 37431384 37431406 -83826124 + AT_rich Low_complexity Low_complexity 1 22 0 5 870 489 311 155 0 chr12 37431438 37431689 -83825841 - B4A SINE B4 -2 290 1 5 870 34 0 0 0 chr12 37431962 37431996 -83825534 + AT_rich Low_complexity Low_complexity 1 34 0 5 870 790 160 76 7 chr12 37432005 37432150 -83825380 + B2_Mm2 SINE B2 15 169 -26 5 870 807 161 85 94 chr12 37432331 37432543 -83824987 + ORR1D1 LTR MaLR 117 326 -48 5 870 385 291 107 69 chr12 37432657 37432919 -83824611 + RLTR18B LTR ERVK 189 460 -52 5 870 188 345 81 9 chr12 37433046 37433157 -83824373 - MIR3 SINE MIR -39 169 51 5 870 307 281 58 58 chr12 37433291 37433446 -83824084 - Lx5 LINE L1 -8 7042 6888 5 870 761 235 125 0 chr12 37433446 37433497 -83824033 + Lx5 LINE L1 6659 6709 -341 5 870 228 100 0 0 chr12 37433497 37433537 -83823993 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 5 870 761 235 125 0 chr12 37433537 37433685 -83823845 + Lx5 LINE L1 6710 6882 -168 5 870 222 267 33 16 chr12 37433742 37433803 -83823727 + BC1_Mm scRNA scRNA 3 64 -88 5 870 259 246 27 55 chr12 37433750 37433823 -83823707 + ID SINE ID 12 82 -142 5 870 1290 230 64 51 chr12 37436004 37436379 -83821151 + RLTR40 LTR ERVK 1 380 -437 5 870 650 272 94 31 chr12 37436395 37436490 -83821040 + RLTR15 LTR ERVK 1 96 -263 5 870 534 31 0 0 chr12 37436490 37436554 -83820976 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 870 650 272 94 31 chr12 37436554 37436746 -83820784 + RLTR15 LTR ERVK 97 306 -53 5 870 435 253 19 137 chr12 37436823 37436855 -83820675 + RLTR40 LTR ERVK 447 474 -343 5 870 1036 235 0 5 chr12 37436855 37437056 -83820474 + B3 SINE B2 3 202 -14 5 870 435 253 19 137 chr12 37437056 37437279 -83820251 + RLTR40 LTR ERVK 475 672 -145 5 870 578 263 20 89 chr12 37437253 37437499 -83820031 + RLTR40 LTR ERVK 570 798 -19 5 870 386 169 24 0 chr12 37437608 37437691 -83819839 + CT-rich Low_complexity Low_complexity 2 86 0 5 870 427 243 56 37 chr12 37437696 37437803 -83819727 - B1F2 SINE Alu -4 145 37 5 870 576 207 27 27 chr12 37437838 37437987 -83819543 + Lx7 LINE L1 7548 7696 0 5 870 213 211 0 0 chr12 37438020 37438072 -83819458 + (TATG)n Simple_repeat Simple_repeat 2 53 0 5 870 519 138 0 0 chr12 37438102 37438189 -83819341 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 870 707 235 30 5 chr12 37438291 37438488 -83819042 - L1MA9 LINE L1 -324 5988 5787 5 870 953 74 7 0 chr12 37438847 37438982 -83818548 + (GGAA)n Simple_repeat Simple_repeat 4 139 0 5 870 366 327 80 6 chr12 37439111 37439274 -83818256 - MLT1A1 LTR MaLR -212 196 22 5 870 4321 78 15 18 chr12 37440096 37440713 -83816817 + L1_Mus4 LINE L1 6022 6636 0 5 870 204 64 20 41 chr12 37442654 37442703 -83814827 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 5 870 180 0 0 0 chr12 37443208 37443228 -83814302 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 870 244 273 13 13 chr12 37443271 37443349 -83814181 + CT-rich Low_complexity Low_complexity 2 79 0 5 870 249 339 162 26 chr12 37443735 37443926 -83813604 - MIR SINE MIR -21 241 25 5 870 304 176 29 19 chr12 37444913 37445017 -83812513 + GA-rich Low_complexity Low_complexity 5 109 0 5 870 217 158 0 50 chr12 37445992 37446052 -83811478 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 5 870 207 182 0 0 chr12 37446207 37446251 -83811279 + A-rich Low_complexity Low_complexity 5 48 0 5 870 225 301 0 78 chr12 37446659 37446749 -83810781 + MIRb SINE MIR 119 201 -67 5 870 216 97 0 0 chr12 37448468 37448499 -83809031 + (A)n Simple_repeat Simple_repeat 1 31 0 5 870 405 0 0 0 chr12 37448562 37448607 -83808923 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 870 23 54 0 0 chr12 37448858 37448895 -83808635 + AT_rich Low_complexity Low_complexity 1 37 0 5 870 301 340 117 22 chr12 37450546 37450820 -83806710 - L2a LINE L2 -140 3286 2987 5 870 498 17 0 0 chr12 37451232 37451291 -83806239 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 870 267 322 98 28 chr12 37451421 37451635 -83805895 + B4 SINE B4 1 229 -63 5 870 555 16 0 0 chr12 37451770 37451834 -83805696 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 870 459 0 0 0 chr12 37451834 37451884 -83805646 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 870 859 218 47 128 chr12 37451917 37452303 -83805227 + ORR1E LTR MaLR 6 379 0 5 870 21 36 0 0 chr12 37453830 37453858 -83803672 + AT_rich Low_complexity Low_complexity 1 28 0 5 870 267 234 42 21 chr12 37454879 37454975 -83802555 - L1ME1 LINE L1 -71 6108 6011 5 870 585 252 77 76 chr12 37455047 37455407 -83802123 - L1ME1 LINE L1 -271 5908 5541 5 870 678 109 0 0 chr12 37455507 37455608 -83801922 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 5 870 252 0 0 0 chr12 37455608 37455636 -83801894 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 870 512 206 55 16 chr12 37455639 37455767 -83801763 - B1_Mus1 SINE Alu -15 133 1 5 870 23 54 0 0 chr12 37455767 37455804 -83801726 + AT_rich Low_complexity Low_complexity 1 37 0 6 870 489 262 20 40 chr12 37456377 37456528 -83801002 + RSINE1 SINE B4 3 150 -15 6 870 1070 257 77 28 chr12 37456589 37456942 -83800588 + ORR1D2 LTR MaLR 1 370 0 6 870 24 32 0 0 chr12 37457295 37457326 -83800204 + AT_rich Low_complexity Low_complexity 1 31 0 6 870 207 0 0 0 chr12 37457443 37457466 -83800064 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 870 1316 272 22 22 chr12 37457536 37457859 -83799671 + Lx5 LINE L1 6723 7045 -5 6 870 21 89 0 0 chr12 37457877 37457933 -83799597 + AT_rich Low_complexity Low_complexity 1 56 0 6 870 7039 225 78 14 chr12 37458144 37458323 -83799207 - Lx7 LINE L1 -20 7676 7450 6 870 441 0 0 0 chr12 37458323 37458372 -83799158 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 870 7039 225 78 14 chr12 37458372 37459600 -83797930 - Lx7 LINE L1 -247 7449 6190 6 870 504 0 0 0 chr12 37459600 37459656 -83797874 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 870 7039 225 78 14 chr12 37459656 37459979 -83797551 - Lx7 LINE L1 -1507 6189 5834 6 870 27 29 0 0 chr12 37460150 37460184 -83797346 + AT_rich Low_complexity Low_complexity 1 34 0 6 870 324 0 0 0 chr12 37461228 37461264 -83796266 + (CCAA)n Simple_repeat Simple_repeat 3 38 0 6 870 1052 102 7 0 chr12 37461816 37461963 -83795567 - B1_Mus1 SINE Alu 0 148 1 6 870 1015 83 0 58 chr12 37461972 37462163 -83795367 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 6 870 279 0 0 0 chr12 37462222 37462253 -83795277 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 6 870 199 114 0 43 chr12 37462673 37462719 -83794811 + (CAGAA)n Simple_repeat Simple_repeat 2 45 0 6 870 210 37 0 0 chr12 37462803 37462830 -83794700 + (T)n Simple_repeat Simple_repeat 1 27 0 6 870 386 48 113 0 chr12 37463388 37463450 -83794080 - Lx3A LINE L1 -7 6974 6906 6 870 637 311 46 85 chr12 37464667 37464927 -83792603 - B4 SINE B4 0 292 43 6 870 1159 69 0 0 chr12 37465065 37465210 -83792320 + B1_Mus1 SINE Alu 2 146 -2 6 870 450 0 0 0 chr12 37465210 37465260 -83792270 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 870 351 329 129 24 chr12 37465579 37465834 -83791696 + MLT1C LTR MaLR 16 297 -170 6 870 2208 113 3 3 chr12 37469491 37469810 -83787720 - ORR1A2 LTR MaLR -8 319 1 6 870 5478 136 55 10 chr12 37469841 37470755 -83786775 - RMER17B LTR ERVK -3 955 1 6 870 2707 111 2 5 chr12 37470755 37471155 -83786375 - ORR1A2-int LTR MaLR -10 1953 1555 6 870 454 331 22 27 chr12 37471190 37471373 -83786157 + L2 LINE L2 2406 2587 -832 6 870 24 32 0 0 chr12 37471378 37471409 -83786121 + AT_rich Low_complexity Low_complexity 1 31 0 6 870 496 298 27 47 chr12 37471947 37472095 -83785435 + RSINE1 SINE B4 4 148 -17 6 870 2092 99 32 53 chr12 37472191 37472532 -83784998 + L1Md_F2 LINE L1 6242 6575 -7 6 870 23 0 0 0 chr12 37472533 37472556 -83784974 + AT_rich Low_complexity Low_complexity 1 23 0 6 870 4658 195 65 31 chr12 37473458 37473540 -83783990 - Lx6 LINE L1 -10 7450 7375 6 870 2178 127 90 5 chr12 37473540 37473929 -83783601 + BGLII_Mus LTR ERVK 1 422 0 6 870 4658 195 65 31 chr12 37473929 37474823 -83782707 - Lx6 LINE L1 -86 7374 6441 6 870 2590 228 26 25 chr12 37475125 37475675 -83781855 + Lx5 LINE L1 6479 7032 -18 6 870 285 29 0 0 chr12 37475675 37475709 -83781821 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 6 870 2590 228 26 25 chr12 37475709 37475729 -83781801 + Lx5 LINE L1 7033 7050 0 6 870 2946 172 40 19 chr12 37475758 37476328 -83781202 + Lx2B LINE L1 6402 6983 -17 6 870 220 241 12 12 chr12 37476357 37476437 -83781093 + (TAA)n Simple_repeat Simple_repeat 2 81 0 6 870 333 0 0 0 chr12 37476482 37476519 -83781011 + (TAA)n Simple_repeat Simple_repeat 2 38 0 6 870 22 88 0 0 chr12 37476685 37476742 -83780788 + AT_rich Low_complexity Low_complexity 1 57 0 6 870 257 333 0 19 chr12 37477136 37477243 -83780287 - Charlie5 DNA MER1_type -2503 121 17 6 870 5781 109 21 23 chr12 37477357 37478279 -83779251 + Lx3_Mus LINE L1 5642 6561 -448 6 870 410 118 130 13 chr12 37478268 37478319 -83779211 + Lx3_Mus LINE L1 6476 6536 -473 6 870 198 0 0 0 chr12 37478319 37478341 -83779189 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 870 410 118 130 13 chr12 37478341 37478366 -83779164 + Lx3_Mus LINE L1 6537 6561 -448 6 870 3321 119 6 51 chr12 37478355 37478905 -83778625 + Lx3A LINE L1 6457 6981 0 6 870 21 36 0 0 chr12 37478946 37478974 -83778556 + AT_rich Low_complexity Low_complexity 1 28 0 6 870 510 314 40 0 chr12 37479226 37479401 -83778129 - B3A SINE B2 -16 182 1 6 870 247 321 85 0 chr12 37479785 37479891 -83777639 + Charlie10 DNA MER1_type 51 165 -2657 6 870 335 284 228 52 chr12 37480014 37480231 -83777299 + B4A SINE B4 11 265 -27 6 870 508 331 12 30 chr12 37480314 37480482 -83777048 + RSINE1 SINE B4 1 165 0 6 870 233 258 11 0 chr12 37480828 37480921 -83776609 + CT-rich Low_complexity Low_complexity 3 96 0 6 870 233 250 17 35 chr12 37481041 37481099 -83776431 - L2 LINE L2 -1039 2380 2324 6 870 251 212 44 29 chr12 37482227 37482295 -83775235 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 6 870 367 348 42 24 chr12 37482453 37482511 -83775019 - MER45A DNA Tip100 -7 171 114 6 870 231 61 0 0 chr12 37482511 37482544 -83774986 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 870 367 348 42 24 chr12 37482544 37482650 -83774880 - MER45A DNA Tip100 -65 113 5 6 870 1328 292 8 23 chr12 37483265 37483650 -83773880 - MTE2a LTR MaLR 0 379 1 6 870 295 344 137 0 chr12 37483736 37483867 -83773663 + MTEb LTR MaLR 194 342 -37 6 870 26 40 0 20 chr12 37483929 37483947 -83773583 + AT_rich Low_complexity Low_complexity 1 18 0 6 870 1529 166 11 31 chr12 37483947 37484233 -83773297 + Lx3B LINE L1 6690 6969 -4 6 870 26 40 0 20 chr12 37484233 37484265 -83773265 + AT_rich Low_complexity Low_complexity 1 32 0 6 870 1373 289 40 5 chr12 37484330 37484703 -83772827 - MTE-int LTR MaLR -213 1367 982 6 870 973 291 82 29 chr12 37484715 37485030 -83772500 + MTE2a LTR MaLR 47 378 -1 6 870 709 71 9 9 chr12 37485064 37485178 -83772352 + (TCTA)n Simple_repeat Simple_repeat 3 116 0 6 870 1354 264 25 3 chr12 37485233 37485548 -83771982 - Lx5 LINE L1 -100 6950 6629 6 871 406 276 41 20 chr12 37486861 37487057 -83770473 + L1M2 LINE L1 4408 4607 -1536 6 871 297 288 155 5 chr12 37487172 37487385 -83770145 + L1M2 LINE L1 5081 5325 -818 6 871 993 294 54 64 chr12 37487752 37488197 -83769333 - MT2A LTR ERVL -26 528 62 6 871 371 359 48 0 chr12 37488973 37489118 -83768412 + RSINE1 SINE B4 5 156 -9 6 871 300 314 112 25 chr12 37489586 37489782 -83767748 - Tigger1 DNA MER2_type -196 2222 2010 6 871 435 125 0 0 chr12 37490193 37490265 -83767265 + (TTTTC)n Simple_repeat Simple_repeat 4 75 0 6 871 866 181 11 0 chr12 37490254 37490431 -83767099 + CT-rich Low_complexity Low_complexity 2 180 0 6 871 392 330 116 58 chr12 37490588 37490881 -83766649 - L1MEb LINE L1 -5472 598 289 6 871 330 107 0 0 chr12 37491021 37491077 -83766453 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 871 21 36 0 0 chr12 37491110 37491138 -83766392 + AT_rich Low_complexity Low_complexity 1 28 0 6 871 21 57 0 0 chr12 37493557 37493592 -83763938 + AT_rich Low_complexity Low_complexity 1 35 0 6 871 4240 236 106 12 chr12 37493670 37494733 -83762797 - Lx6 LINE L1 -6 7454 6292 6 871 6476 189 140 8 chr12 37494720 37496483 -83761047 - Lx6 LINE L1 -1427 6033 3989 6 871 3754 251 63 94 chr12 37496839 37498165 -83759365 - Lx7 LINE L1 0 7696 6412 6 871 396 0 0 0 chr12 37499506 37499550 -83757980 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 871 220 311 21 32 chr12 37500313 37500406 -83757124 + MIR SINE MIR 104 195 -67 1 871 315 202 31 0 chr12 37500554 37500630 -83756900 + MER5A DNA MER1_type 4 82 -107 2 871 402 297 129 0 chr12 37502719 37502874 -83754656 - B3 SINE B2 -6 210 36 3 871 24 0 0 0 chr12 37503216 37503240 -83754290 + AT_rich Low_complexity Low_complexity 1 24 0 4 871 1004 151 0 6 chr12 37503335 37503515 -83754015 + CT-rich Low_complexity Low_complexity 1 179 0 5 871 234 0 0 0 chr12 37503518 37503544 -83753986 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 871 1881 169 72 17 chr12 37503544 37503819 -83753711 - Lx LINE L1 -13 6641 6347 7 871 483 18 0 0 chr12 37503819 37503875 -83753655 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 871 1881 169 72 17 chr12 37503875 37504002 -83753528 - Lx LINE L1 -308 6346 6217 7 871 1404 152 0 55 chr12 37504004 37504309 -83753221 + L1_Mus3 LINE L1 6367 6638 0 9 871 3378 122 71 44 chr12 37504532 37505106 -83752424 - Lx LINE L1 -4 6650 6061 1 871 1390 176 0 28 chr12 37505106 37505162 -83752368 + Lx2 LINE L1 6141 6190 -807 1 871 1694 102 127 4 chr12 37505162 37505437 -83752093 + RLTR27 LTR ERVK 1 309 0 1 871 1390 176 0 28 chr12 37505437 37505631 -83751899 + Lx2 LINE L1 6191 6384 -613 1 871 283 389 75 49 chr12 37505733 37506346 -83751184 + L2 LINE L2 2333 2961 -458 1 871 30 45 0 0 chr12 37506362 37506406 -83751124 + AT_rich Low_complexity Low_complexity 1 44 0 1 871 624 27 0 0 chr12 37506599 37506673 -83750857 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 1 871 189 0 0 0 chr12 37507738 37507759 -83749771 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 871 312 27 0 0 chr12 37508234 37508271 -83749259 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 871 443 267 93 52 chr12 37509326 37509595 -83747935 - L1ME2z LINE L1 -428 6016 5737 1 871 686 274 25 40 chr12 37509645 37509843 -83747687 + B3A SINE B2 4 198 0 1 871 533 326 28 11 chr12 37509876 37510158 -83747372 - L1ME2z LINE L1 -776 5668 5382 1 871 24 67 0 0 chr12 37510306 37510351 -83747179 + AT_rich Low_complexity Low_complexity 1 45 0 2 871 210 37 0 0 chr12 37510438 37510465 -83747065 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 871 22 0 0 0 chr12 37510707 37510729 -83746801 + AT_rich Low_complexity Low_complexity 1 22 0 2 871 500 30 0 15 chr12 37511296 37511363 -83746167 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 871 28 0 0 0 chr12 37511516 37511544 -83745986 + AT_rich Low_complexity Low_complexity 1 28 0 2 871 24 0 0 0 chr12 37511583 37511607 -83745923 + AT_rich Low_complexity Low_complexity 1 24 0 2 871 557 238 106 93 chr12 37512316 37512627 -83744903 + MER33 DNA MER1_type 9 323 -1 2 871 1019 217 5 0 chr12 37513462 37513674 -83743856 - Lx5 LINE L1 -362 6688 6476 2 871 875 267 208 7 chr12 37513673 37513967 -83743563 + Lx5 LINE L1 6691 7043 -7 2 871 2675 112 5 5 chr12 37515107 37515511 -83742019 - L1_Mus3 LINE L1 0 6638 6235 2 871 2742 56 3 3 chr12 37515511 37515851 -83741679 + L1_Mus3 LINE L1 5886 6225 -411 2 871 23 33 0 0 chr12 37518540 37518570 -83738960 + AT_rich Low_complexity Low_complexity 1 30 0 2 871 306 169 22 11 chr12 37522005 37522095 -83735435 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 871 33 0 0 0 chr12 37523118 37523151 -83734379 + AT_rich Low_complexity Low_complexity 1 33 0 3 871 218 301 19 19 chr12 37523299 37523404 -83734126 + (TATATG)n Simple_repeat Simple_repeat 5 109 0 3 871 180 0 0 0 chr12 37524476 37524496 -83733034 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 3 871 777 265 39 26 chr12 37526311 37526388 -83731142 - RMER20A LTR ERVK -133 383 354 3 871 3210 35 74 0 chr12 37526388 37526793 -83730737 + L1Md_F2 LINE L1 6145 6579 -3 3 871 777 224 73 41 chr12 37526793 37526821 -83730709 - RMER20A LTR ERVK -163 353 329 3 871 333 0 0 0 chr12 37526821 37526858 -83730672 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 871 777 224 73 41 chr12 37526858 37527016 -83730514 - RMER20A LTR ERVK -188 328 159 3 871 3406 28 2 0 chr12 37527070 37527465 -83730065 - MTA_Mm LTR MaLR 0 396 1 3 871 234 25 0 0 chr12 37528090 37528130 -83729400 + L1_Mus4 LINE L1 6594 6633 -3 3 871 589 183 0 0 chr12 37528248 37528352 -83729178 + Lx9 LINE L1 7014 7117 -527 3 871 782 220 66 6 chr12 37528348 37528531 -83728999 - Lx9 LINE L1 -239 7405 7212 4 871 493 195 85 0 chr12 37530631 37530749 -83726781 - B3 SINE B2 0 216 89 4 871 4575 137 124 70 chr12 37530749 37531713 -83725817 + RLTR13D2 LTR ERVK 1 1016 -7 4 871 348 177 177 0 chr12 37531720 37531799 -83725731 - B3 SINE B2 -122 94 2 4 871 180 77 0 0 chr12 37532242 37532268 -83725262 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 871 226 68 68 0 chr12 37532911 37532955 -83724575 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 871 554 356 51 37 chr12 37533862 37534157 -83723373 - MLT1A LTR MaLR 0 374 76 4 871 1776 155 148 3 chr12 37534156 37534493 -83723037 - ORR1B1 LTR MaLR -8 386 1 4 871 23 92 0 0 chr12 37534583 37534648 -83722882 + AT_rich Low_complexity Low_complexity 1 65 0 4 871 203 298 6 44 chr12 37534894 37535052 -83722478 + (TATATG)n Simple_repeat Simple_repeat 6 157 0 4 871 21 57 0 0 chr12 37535120 37535155 -83722375 + AT_rich Low_complexity Low_complexity 1 35 0 4 871 285 29 0 0 chr12 37535233 37535267 -83722263 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 871 6938 85 30 20 chr12 37535267 37536263 -83721267 - L1_Mus4 LINE L1 -11 6625 5620 5 871 757 142 5 0 chr12 37536250 37536383 -83721147 + L1_Mm LINE L1 5525 5661 -216 5 871 765 275 92 9 chr12 37536680 37537007 -83720523 - L1M2 LINE L1 -1220 4923 4570 5 871 799 331 92 37 chr12 37537056 37538365 -83719165 - L1_Rod LINE L1 -3263 2584 1203 5 871 245 204 37 0 chr12 37539003 37539057 -83718473 + ID SINE ID 2 57 -167 5 871 672 13 0 0 chr12 37539468 37539545 -83717985 + (TTC)n Simple_repeat Simple_repeat 2 78 0 5 871 301 313 12 0 chr12 37540684 37540767 -83716763 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 871 3167 41 5 22 chr12 37540828 37541231 -83716299 + MTA_Mm LTR MaLR 1 396 0 5 871 306 0 0 0 chr12 37541257 37541291 -83716239 + (T)n Simple_repeat Simple_repeat 1 34 0 5 871 204 150 32 32 chr12 37541533 37541595 -83715935 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 6 871 557 337 29 13 chr12 37541596 37541909 -83715621 - Lx9 LINE L1 -127 7517 7200 6 871 1996 221 94 37 chr12 37541954 37542044 -83715486 - RLTR20A LTR ERVK 0 541 451 6 871 276 30 0 0 chr12 37542044 37542077 -83715453 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 871 1996 221 94 37 chr12 37542077 37542317 -83715213 - RLTR20A LTR ERVK -91 450 190 6 871 671 65 0 11 chr12 37542317 37542411 -83715119 + (TCC)n Simple_repeat Simple_repeat 3 95 0 6 871 1996 221 94 37 chr12 37542411 37542591 -83714939 - RLTR20A LTR ERVK -352 189 1 6 871 543 254 111 30 chr12 37542594 37542829 -83714701 - Lx9 LINE L1 -494 7150 6897 6 871 613 205 12 53 chr12 37542835 37543005 -83714525 + FordPrefect DNA Tip100 793 955 -728 6 871 1394 316 28 9 chr12 37543248 37543781 -83713749 - Lx9 LINE L1 -741 6903 6361 6 871 955 319 30 13 chr12 37543888 37544193 -83713337 + ERVL-B4-int LTR ERVL 4086 4395 -1319 6 871 607 232 251 0 chr12 37544212 37544475 -83713055 - Lx9 LINE L1 -2 7642 7314 6 871 526 332 120 29 chr12 37544641 37545050 -83712480 + ERVL-B4-int LTR ERVL 4396 4841 -873 6 871 226 255 0 0 chr12 37545790 37545841 -83711689 + CT-rich Low_complexity Low_complexity 1 51 0 6 871 266 333 24 55 chr12 37546474 37546601 -83710929 + B3A SINE B2 61 183 -15 6 871 468 0 0 0 chr12 37546605 37546657 -83710873 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 871 659 284 40 52 chr12 37546688 37547163 -83710367 + L1M5 LINE L1 5306 5773 -406 7 871 2311 144 66 2 chr12 37547297 37547693 -83709837 - MTC LTR MaLR 0 421 1 7 871 308 351 28 66 chr12 37547843 37548163 -83709367 - Lx8 LINE L1 -2 7471 7164 7 871 438 348 0 42 chr12 37548196 37548388 -83709142 + Lx8 LINE L1 6812 6995 -478 7 871 263 28 0 27 chr12 37548922 37548959 -83708571 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 871 3437 145 11 40 chr12 37549057 37549689 -83707841 - Lx LINE L1 -6 6648 6035 7 871 712 189 183 0 chr12 37549690 37549870 -83707660 + Lx2 LINE L1 6127 6339 -658 7 871 1589 154 11 0 chr12 37549868 37550135 -83707395 - Lx2 LINE L1 -290 6707 6438 7 871 260 326 106 21 chr12 37552116 37552257 -83705273 - MIRb SINE MIR -61 207 55 7 871 523 299 33 54 chr12 37552455 37552639 -83704891 - Lx8 LINE L1 -175 7298 7119 8 871 204 298 256 11 chr12 37552818 37552998 -83704532 + MIR SINE MIR 26 249 -13 8 871 21 36 0 0 chr12 37554182 37554210 -83703320 + AT_rich Low_complexity Low_complexity 1 28 0 8 871 1056 116 0 0 chr12 37554459 37554631 -83702899 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 8 871 1240 349 172 46 chr12 37554709 37556905 -83700625 + L2 LINE L2 470 2942 -477 8 871 21 0 0 0 chr12 37559260 37559281 -83698249 + AT_rich Low_complexity Low_complexity 1 21 0 8 871 23 33 0 0 chr12 37559301 37559331 -83698199 + AT_rich Low_complexity Low_complexity 1 30 0 8 871 21 36 0 0 chr12 37559676 37559704 -83697826 + AT_rich Low_complexity Low_complexity 1 28 0 8 871 324 0 0 0 chr12 37560606 37560642 -83696888 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 871 1151 265 84 79 chr12 37560784 37561190 -83696340 + MTD LTR MaLR 12 419 0 8 871 507 82 0 0 chr12 37562286 37562359 -83695171 + (CA)n Simple_repeat Simple_repeat 1 73 0 9 871 704 274 100 26 chr12 37564182 37564493 -83693037 - Lx9 LINE L1 -11 7633 7300 9 871 973 132 50 40 chr12 37564517 37564715 -83692815 + Lx3B LINE L1 6771 6970 -3 9 871 198 103 0 0 chr12 37564721 37564750 -83692780 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 9 871 354 329 116 53 chr12 37564816 37565055 -83692475 - HAL1 LINE L1 -822 1685 1426 9 871 474 18 0 0 chr12 37565055 37565110 -83692420 + (TC)n Simple_repeat Simple_repeat 2 56 0 9 871 354 329 116 53 chr12 37565110 37565207 -83692323 - HAL1 LINE L1 -1082 1425 1328 9 871 303 104 0 0 chr12 37565219 37565267 -83692263 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 9 871 5805 115 21 11 chr12 37565270 37566166 -83691364 - Lx3A LINE L1 -2 6979 6075 9 871 384 252 86 69 chr12 37567728 37567903 -83689627 - MamGypLTR1c LTR Gypsy -563 240 63 9 871 326 58 39 0 chr12 37568071 37568123 -83689407 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 9 871 203 0 0 36 chr12 37568228 37568256 -83689274 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 871 428 292 32 25 chr12 37569449 37569607 -83687923 - Lx7 LINE L1 -913 6783 6625 1 871 1787 206 68 8 chr12 37569822 37570219 -83687311 - MTC LTR MaLR 0 421 1 1 871 339 179 0 0 chr12 37570268 37570335 -83687195 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 871 1197 201 152 36 chr12 37571334 37571669 -83685861 + ORR1D1 LTR MaLR 1 374 0 1 871 1561 248 7 79 chr12 37571669 37572076 -83685454 - MTD LTR MaLR -34 385 8 1 871 23 33 0 0 chr12 37572421 37572451 -83685079 + AT_rich Low_complexity Low_complexity 1 30 0 1 871 874 158 189 0 chr12 37573449 37573639 -83683891 + URR1A DNA MER1_type 1 226 0 1 871 29 47 0 0 chr12 37573801 37573844 -83683686 + AT_rich Low_complexity Low_complexity 1 43 0 1 871 278 50 25 0 chr12 37574150 37574190 -83683340 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 871 372 153 0 0 chr12 37576034 37576119 -83681411 + T-rich Low_complexity Low_complexity 1 85 0 1 871 204 40 0 0 chr12 37578330 37578355 -83679175 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 871 942 185 70 49 chr12 37578405 37578689 -83678841 + Lx7 LINE L1 7400 7689 -7 1 871 788 268 102 4 chr12 37578985 37579210 -83678320 + Lx5 LINE L1 6801 7047 -3 1 871 396 0 0 0 chr12 37581630 37581674 -83675856 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 871 204 40 0 0 chr12 37582525 37582550 -83674980 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 871 25 51 0 0 chr12 37582975 37583014 -83674516 + AT_rich Low_complexity Low_complexity 1 39 0 1 871 4419 156 8 10 chr12 37583343 37584126 -83673404 + Lx3C LINE L1 5757 6537 -439 1 871 1001 284 165 58 chr12 37584369 37585059 -83672471 - L1M3 LINE L1 -1182 4958 4255 1 871 204 40 0 0 chr12 37585059 37585084 -83672446 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 871 1001 284 165 58 chr12 37585084 37585309 -83672221 - L1M3 LINE L1 -1886 4254 3945 1 871 408 20 0 0 chr12 37586523 37586572 -83670958 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 871 558 322 72 21 chr12 37587426 37587950 -83669580 + L1MC2 LINE L1 5775 6325 -19 1 871 616 242 0 0 chr12 37588549 37588673 -83668857 + B1_Mur1 SINE Alu 26 149 0 1 871 422 267 55 24 chr12 37590989 37591154 -83666376 + MamSINE1 SINE tRNA 114 283 -7 1 871 402 21 0 0 chr12 37591657 37591704 -83665826 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 871 871 235 66 0 chr12 37593214 37593410 -83664120 - B3 SINE B2 -3 213 5 1 871 265 276 104 9 chr12 37594453 37594559 -83662971 + PB1D10 SINE Alu 2 117 0 1 871 21 0 0 0 chr12 37595066 37595087 -83662443 + AT_rich Low_complexity Low_complexity 1 21 0 1 871 279 0 0 0 chr12 37595756 37595787 -83661743 + (A)n Simple_repeat Simple_repeat 1 31 0 1 871 490 128 21 0 chr12 37595998 37596092 -83661438 + (TA)n Simple_repeat Simple_repeat 1 96 0 1 871 406 195 0 0 chr12 37596533 37596610 -83660920 - Lx5 LINE L1 -1092 5958 5882 1 871 317 184 20 30 chr12 37597183 37597284 -83660246 + CT-rich Low_complexity Low_complexity 5 104 0 1 871 285 51 0 0 chr12 37597587 37597626 -83659904 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 871 706 323 70 101 chr12 37598599 37598985 -83658545 - MTE2a LTR MaLR -5 374 1 1 871 1839 223 55 8 chr12 37599111 37599509 -83658021 - MTC LTR MaLR 0 421 5 1 871 1020 130 0 0 chr12 37599594 37599740 -83657790 + B1_Mus2 SINE Alu 1 146 -1 1 871 225 219 15 15 chr12 37599865 37599930 -83657600 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1 871 234 247 0 0 chr12 37600475 37600552 -83656978 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 871 4182 52 8 2 chr12 37601266 37601789 -83655741 - L1Md_F2 LINE L1 -199 5684 5159 1 871 6719 68 0 16 chr12 37601792 37602679 -83654851 + L1Md_F2 LINE L1 5698 6570 -12 1 871 226 312 0 49 chr12 37604714 37604795 -83652735 - RLTR18B LTR ERVK -146 366 290 1 871 408 20 0 0 chr12 37605242 37605291 -83652239 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 871 405 0 0 0 chr12 37605300 37605345 -83652185 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 871 855 308 32 21 chr12 37605976 37606258 -83651272 - B4 SINE B4 -6 286 2 1 871 360 0 0 0 chr12 37606281 37606321 -83651209 + (CAAAC)n Simple_repeat Simple_repeat 1 40 0 1 871 435 284 138 29 chr12 37607352 37607526 -83650004 + MIRb SINE MIR 73 265 -3 1 871 287 189 0 0 chr12 37607606 37607659 -83649871 + MIR SINE MIR 105 157 -105 1 871 7538 132 93 6 chr12 37607759 37608379 -83649151 - Lx3C LINE L1 -10 6966 6247 1 871 5479 87 7 70 chr12 37608379 37609236 -83648294 - RLTR13B4 LTR ERVK 0 803 1 1 871 7538 134 70 7 chr12 37609236 37610121 -83647409 - Lx3C LINE L1 -730 6246 5355 1 871 396 40 0 0 chr12 37610158 37610208 -83647322 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 871 332 185 113 52 chr12 37611110 37611207 -83646323 - L1M2 LINE L1 -755 5545 5443 1 871 239 344 0 0 chr12 37611371 37611496 -83646034 - L1M2 LINE L1 -1614 4529 4405 1 871 22 80 0 0 chr12 37611605 37611655 -83645875 + AT_rich Low_complexity Low_complexity 1 50 0 1 871 247 298 69 53 chr12 37611860 37612048 -83645482 + L1ME2z LINE L1 5812 6002 -442 1 871 4105 90 7 0 chr12 37612792 37613358 -83644172 - L1_Mus4 LINE L1 -1 6635 6066 1 871 330 294 7 0 chr12 37613723 37613869 -83643661 + (CA)n Simple_repeat Simple_repeat 2 148 0 1 871 402 325 63 56 chr12 37613870 37614140 -83643390 - LTR82B Low_complexity ERVL -556 274 3 1 871 3606 133 81 0 chr12 37614250 37614829 -83642701 + Lx3A LINE L1 6347 6972 -9 1 871 3187 67 0 0 chr12 37615556 37615961 -83641569 - L1_Mus1 LINE L1 0 6567 6163 1 871 371 366 7 51 chr12 37616389 37616527 -83641003 + RSINE1 SINE B4 3 134 -31 1 871 322 232 137 0 chr12 37616900 37616995 -83640535 + MER2 DNA MER2_type 104 211 -134 1 108 6850 65 8 3 chr12 37617076 37617966 -83639564 + L1Md_F2 LINE L1 5673 6566 -16 1 872 775 294 98 23 chr12 37618414 37618996 -83638534 - L1MA4 LINE L1 -363 5937 5322 1 872 903 212 63 5 chr12 37619231 37619454 -83638076 - Lx4B LINE L1 -6 7052 6817 1 872 207 133 0 0 chr12 37619829 37619874 -83637656 + (A)n Simple_repeat Simple_repeat 1 45 0 1 872 837 331 42 55 chr12 37619982 37620512 -83637018 + Lx8 LINE L1 6946 7468 -5 1 872 376 173 0 0 chr12 37621667 37621748 -83635782 - L1Md_F2 LINE L1 -1 6581 6501 1 872 22 0 0 0 chr12 37622159 37622181 -83635349 + AT_rich Low_complexity Low_complexity 1 22 0 1 872 420 179 67 104 chr12 37623573 37623766 -83633764 - Lx7 LINE L1 0 7696 7511 1 872 333 215 29 51 chr12 37623779 37623916 -83633614 + Lx7 LINE L1 7355 7488 -208 1 872 2606 216 26 27 chr12 37623909 37624494 -83633036 - Lx7 LINE L1 -390 7306 6723 1 872 444 299 84 22 chr12 37625139 37625317 -83632213 - MTE-int LTR MaLR -42 1538 1350 1 872 1477 237 80 15 chr12 37625319 37625709 -83631821 - Lx9 LINE L1 -482 7162 6748 1 872 414 0 0 0 chr12 37625770 37625816 -83631714 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 872 236 156 15 30 chr12 37625857 37625923 -83631607 + Lx9 LINE L1 7527 7591 -53 1 872 636 310 39 38 chr12 37625930 37626383 -83631147 + RLTR12B LTR ERVK 17 334 -25 1 872 23 0 0 0 chr12 37626430 37626453 -83631077 + AT_rich Low_complexity Low_complexity 1 23 0 1 872 622 94 67 17 chr12 37626606 37626725 -83630805 - L1Md_F2 LINE L1 -2 6580 6456 1 872 529 336 0 7 chr12 37627293 37627434 -83630096 + RSINE1 SINE B4 6 145 -20 1 872 204 216 0 0 chr12 37627457 37627494 -83630036 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 1 872 452 340 71 37 chr12 37627503 37627799 -83629731 + MLT1A0 LTR MaLR 60 365 0 1 872 253 319 0 54 chr12 37628614 37628707 -83628823 - ID4_ SINE ID -60 92 5 1 872 475 249 107 78 chr12 37628711 37628955 -83628575 - Charlie1b DNA MER1_type -207 316 66 1 872 635 196 139 7 chr12 37629039 37629183 -83628347 - MTE2a LTR MaLR -1 378 216 1 872 365 358 94 23 chr12 37629198 37629464 -83628066 - MTD LTR MaLR -109 310 26 1 872 180 0 0 0 chr12 37629466 37629486 -83628044 + (CAA)n Simple_repeat Simple_repeat 1 20 0 1 872 278 187 0 165 chr12 37630754 37630863 -83626667 + MER31-int LTR ERV1 4014 4104 -832 1 872 2414 98 41 23 chr12 37631430 37631818 -83625712 + Lx LINE L1 6260 6654 0 1 872 699 239 18 17 chr12 37631834 37632027 -83625503 - Lx9 LINE L1 -435 7209 6886 1 872 761 103 0 8 chr12 37632054 37632172 -83625358 + (TTTTC)n Simple_repeat Simple_repeat 5 121 0 1 872 519 168 0 0 chr12 37632186 37632281 -83625249 + CT-rich Low_complexity Low_complexity 1 95 0 1 872 1839 276 30 26 chr12 37632281 37632776 -83624754 - Lx9 LINE L1 -653 6991 6495 1 872 433 269 62 21 chr12 37632777 37632921 -83624609 - MT2A LTR ERVL -285 248 99 1 872 360 358 66 7 chr12 37632938 37632958 -83624572 - MTE2a LTR MaLR -218 161 1 1 872 694 206 0 8 chr12 37632958 37633090 -83624440 - MT2A LTR ERVL -402 131 1 1 872 791 269 146 0 chr12 37633255 37633626 -83623904 + Lx9 LINE L1 7204 7628 -16 1 872 235 333 154 7 chr12 37633691 37633827 -83623703 + L2a LINE L2 3264 3419 -7 1 872 227 337 11 0 chr12 37634435 37634524 -83623006 + Lx9 LINE L1 7349 7438 -206 1 872 32 43 0 0 chr12 37635010 37635056 -83622474 + AT_rich Low_complexity Low_complexity 1 46 0 1 872 406 336 109 44 chr12 37635588 37635955 -83621575 + L2 LINE L2 2037 2427 -992 1 872 4494 195 32 28 chr12 37636162 37637107 -83620423 + Lx3C LINE L1 6026 6974 -2 1 872 180 0 0 0 chr12 37637539 37637559 -83619971 + (A)n Simple_repeat Simple_repeat 1 20 0 1 872 22 80 0 0 chr12 37638119 37638169 -83619361 + AT_rich Low_complexity Low_complexity 1 50 0 1 872 5029 140 29 7 chr12 37638776 37639598 -83617932 - Lx2A1 LINE L1 -6 7002 6163 1 872 306 0 0 0 chr12 37639679 37639713 -83617817 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 872 1112 66 0 0 chr12 37639713 37639849 -83617681 - B1_Mus1 SINE Alu -10 138 3 2 872 767 71 0 9 chr12 37640984 37641098 -83616432 + L1_Mus2 LINE L1 6454 6566 0 2 872 23 0 0 0 chr12 37643921 37643944 -83613586 + AT_rich Low_complexity Low_complexity 1 23 0 2 872 306 287 18 18 chr12 37645948 37646058 -83611472 + CR1_Mam LINE CR1 278 387 -1817 2 872 243 0 0 0 chr12 37646624 37646651 -83610879 + (T)n Simple_repeat Simple_repeat 1 27 0 2 872 1141 61 0 7 chr12 37646651 37646799 -83610731 - B1_Mus1 SINE Alu 0 148 2 2 872 229 316 10 0 chr12 37647451 37647549 -83609981 + CR1_Mam LINE CR1 1309 1407 -797 2 872 440 145 0 0 chr12 37647845 37647907 -83609623 - Lx6 LINE L1 -330 7130 7069 2 872 920 292 101 13 chr12 37647938 37648254 -83609276 + Lx6 LINE L1 6742 7085 -375 2 872 21 0 0 0 chr12 37649270 37649291 -83608239 + AT_rich Low_complexity Low_complexity 1 21 0 2 872 886 156 197 22 chr12 37649447 37649630 -83607900 + B3 SINE B2 2 216 0 2 872 23 0 0 0 chr12 37649732 37649755 -83607775 + AT_rich Low_complexity Low_complexity 1 23 0 2 872 234 200 0 43 chr12 37649880 37649927 -83607603 + RLTR26 LTR ERVK 386 430 -212 2 872 329 0 24 0 chr12 37650228 37650269 -83607261 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 872 222 91 0 0 chr12 37651442 37651475 -83606055 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2 872 456 298 42 21 chr12 37651475 37651490 -83606040 - RSINE1 SINE B4 -3 162 148 2 872 195 69 0 0 chr12 37651490 37651519 -83606011 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2 872 456 298 42 21 chr12 37651519 37651647 -83605883 - RSINE1 SINE B4 -18 147 17 2 872 252 290 125 45 chr12 37651648 37651760 -83605770 - PB1 SINE Alu 0 127 7 2 872 282 279 139 37 chr12 37652163 37652271 -83605259 + RSINE1 SINE B4 1 119 -46 2 872 240 35 0 0 chr12 37652286 37652315 -83605215 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 872 404 308 53 15 chr12 37652917 37653049 -83604481 + MIR3 SINE MIR 65 201 -7 2 872 1132 68 0 20 chr12 37654856 37655007 -83602523 - B1_Mus1 SINE Alu 0 148 1 2 872 21 57 0 0 chr12 37655017 37655052 -83602478 + AT_rich Low_complexity Low_complexity 1 35 0 2 872 357 109 0 0 chr12 37656285 37656340 -83601190 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 872 476 318 20 20 chr12 37656378 37656529 -83601001 - RSINE1 SINE B4 -12 153 3 2 872 29 47 0 0 chr12 37656770 37656813 -83600717 + AT_rich Low_complexity Low_complexity 1 43 0 2 872 513 0 0 0 chr12 37657006 37657063 -83600467 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 2 872 219 161 0 0 chr12 37657165 37657221 -83600309 + GA-rich Low_complexity Low_complexity 2 57 0 2 872 3324 81 139 0 chr12 37657308 37657803 -83599727 + L1_Mus3 LINE L1 6069 6632 -6 2 872 572 191 6 96 chr12 37657872 37658028 -83599502 + Lx5 LINE L1 6841 6982 -68 2 872 302 318 150 31 chr12 37658217 37658444 -83599086 + MamRep605 Unknown Unknown 493 746 -130 2 872 228 171 0 24 chr12 37660177 37660219 -83597311 + GA-rich Low_complexity Low_complexity 3 43 0 2 872 273 118 0 0 chr12 37660544 37660595 -83596935 + (TGG)n Simple_repeat Simple_repeat 3 53 0 2 872 534 323 157 8 chr12 37660597 37660844 -83596686 - B4 SINE B4 -2 290 7 2 872 22 56 0 0 chr12 37661135 37661171 -83596359 + AT_rich Low_complexity Low_complexity 1 36 0 2 872 405 0 0 0 chr12 37663076 37663121 -83594409 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 872 1016 55 6 110 chr12 37663350 37663514 -83594016 + B1_Mm SINE Alu 1 147 0 2 872 252 130 0 0 chr12 37663514 37663560 -83593970 + (A)n Simple_repeat Simple_repeat 1 46 0 2 872 6855 221 79 19 chr12 37664342 37666185 -83591345 - Lx6 LINE L1 -22 7438 5462 2 872 735 177 18 54 chr12 37666644 37666746 -83590784 - Lx6 LINE L1 -413 5467 5372 2 872 1726 61 0 4 chr12 37666746 37666976 -83590554 + L1Md_F3 LINE L1 6342 6570 -14 2 872 4886 230 100 67 chr12 37666976 37667049 -83590481 - Lx6 LINE L1 -507 5370 5306 2 872 2592 40 25 0 chr12 37667049 37667371 -83590159 - L1_Mus1 LINE L1 0 6567 6238 2 872 4886 230 100 67 chr12 37667371 37667571 -83589959 - Lx6 LINE L1 -572 5305 5194 2 872 201 39 0 0 chr12 37667571 37667597 -83589933 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 872 4886 230 100 67 chr12 37667597 37669150 -83588380 - Lx6 LINE L1 -684 5193 3472 2 872 495 48 12 24 chr12 37669150 37669235 -83588295 + (TTTTG)n Simple_repeat Simple_repeat 2 85 0 2 872 290 156 104 0 chr12 37669238 37669315 -83588215 - Lx6 LINE L1 -2397 3483 3399 2 872 24 53 0 0 chr12 37669969 37670007 -83587523 + AT_rich Low_complexity Low_complexity 1 38 0 2 872 658 211 7 0 chr12 37670016 37670163 -83587367 - Lx6 LINE L1 -2459 3421 3274 2 872 248 158 18 0 chr12 37670860 37670917 -83586613 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 872 252 0 0 0 chr12 37671125 37671153 -83586377 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2 872 3240 70 7 0 chr12 37671750 37672176 -83585354 - L1_Mus1 LINE L1 0 6567 6139 2 872 1275 155 27 14 chr12 37672268 37672490 -83585040 + URR1B DNA MER1_type 1 225 0 2 872 631 309 45 0 chr12 37673580 37673781 -83583749 - B3 SINE B2 -6 210 1 2 872 229 294 115 19 chr12 37673904 37674008 -83583522 + MER5A1 DNA MER1_type 52 165 -1 2 872 459 0 0 0 chr12 37674279 37674330 -83583200 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2 872 230 286 0 0 chr12 37674631 37674680 -83582850 + C-rich Low_complexity Low_complexity 1 49 0 2 872 306 0 0 0 chr12 37674681 37674715 -83582815 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 872 180 246 133 50 chr12 37675626 37675686 -83581844 + L4 LINE RTE 1605 1669 -360 2 872 359 330 10 0 chr12 37677036 37677136 -83580394 + PB1D10 SINE Alu 2 102 -15 2 872 35533 46 1 4 chr12 37678294 37683731 -83573799 + L1Md_T LINE L1 73 5589 -297 2 872 8503 31 0 0 chr12 37683731 37684726 -83572804 + L1Md_T LINE L1 5590 6584 -1 2 872 2350 220 38 48 chr12 37685007 37685980 -83571550 + L1_Mus1 LINE L1 260 1208 -5433 2 872 31036 103 8 3 chr12 37685984 37691548 -83565982 + L1_Mus1 LINE L1 1075 6570 0 2 872 2110 170 94 19 chr12 37691798 37692223 -83565307 - L1_Mus4 LINE L1 -8 6628 6172 2 872 8822 189 55 77 chr12 37692226 37692813 -83564717 - L1_Mur3 LINE L1 -576 5304 4692 2 872 892 66 4 7 chr12 37692813 37692953 -83564577 + B1_Mm SINE Alu 12 149 0 2 872 8822 189 55 77 chr12 37692953 37694116 -83563414 - L1_Mur3 LINE L1 -576 4691 3476 2 872 1100 63 0 34 chr12 37694116 37694127 -83563403 - B1_Mus1 SINE Alu -4 144 138 2 872 228 35 0 0 chr12 37694127 37694156 -83563374 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 872 1100 63 0 34 chr12 37694156 37694292 -83563238 - B1_Mus1 SINE Alu -11 137 2 2 872 8822 189 55 77 chr12 37694292 37694831 -83562699 - L1_Mur3 LINE L1 -2405 3475 2927 2 872 534 104 0 0 chr12 37695228 37695324 -83562206 + (TA)n Simple_repeat Simple_repeat 1 96 0 2 872 473 295 51 74 chr12 37696531 37696747 -83560783 - B3 SINE B2 -2 214 4 2 872 2803 152 0 87 chr12 37697371 37697505 -83560025 - L1_Mm LINE L1 -58 5825 5738 2 872 1264 20 0 0 chr12 37697505 37697652 -83559878 - B1_Mus2 SINE Alu 0 147 1 2 872 2803 152 0 87 chr12 37697652 37698059 -83559471 - Lx2B LINE L1 -146 5737 5331 2 872 5931 176 19 34 chr12 37698059 37699222 -83558308 + Lx2B LINE L1 5853 6998 -2 2 872 286 355 118 43 chr12 37699701 37699981 -83557549 - Charlie1a DNA MER1_type -683 772 472 2 872 24 0 0 0 chr12 37700674 37700698 -83556832 + AT_rich Low_complexity Low_complexity 1 24 0 2 872 216 0 0 0 chr12 37701395 37701419 -83556111 + (T)n Simple_repeat Simple_repeat 1 24 0 2 872 22 0 0 0 chr12 37702165 37702187 -83555343 + AT_rich Low_complexity Low_complexity 1 22 0 2 872 5641 194 35 5 chr12 37702404 37703540 -83553990 - Lx3C LINE L1 -8 6968 5799 2 872 231 189 0 0 chr12 37703702 37703755 -83553775 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 872 633 128 0 0 chr12 37703757 37703859 -83553671 + (GA)n Simple_repeat Simple_repeat 1 102 0 2 872 1506 125 4 8 chr12 37704599 37704858 -83552672 + Lx3A LINE L1 6717 6974 -7 2 872 311 228 0 0 chr12 37704898 37704955 -83552575 - B1F1 SINE Alu -81 68 12 2 872 251 364 9 9 chr12 37705179 37705290 -83552240 - MER46C DNA MER2_type 0 338 228 2 872 2012 177 56 3 chr12 37705947 37706321 -83551209 - ORR1B1 LTR MaLR 0 394 1 2 872 244 245 0 0 chr12 37706323 37706376 -83551154 + RSINE1 SINE B4 88 140 -25 2 872 22 0 0 0 chr12 37706422 37706444 -83551086 + AT_rich Low_complexity Low_complexity 1 22 0 2 872 1053 150 0 0 chr12 37706784 37706964 -83550566 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 872 216 0 0 0 chr12 37708598 37708622 -83548908 + (CAT)n Simple_repeat Simple_repeat 3 26 0 2 872 573 262 25 0 chr12 37708622 37708744 -83548786 - B1_Mur2 SINE Alu -13 136 12 2 872 235 255 27 117 chr12 37708645 37708756 -83548774 - MT2B LTR ERVL -338 263 163 2 872 1032 315 60 43 chr12 37708792 37709486 -83548044 - L1_Mur3 LINE L1 -119 5761 5056 2 872 3189 244 120 26 chr12 37709507 37710519 -83547011 + RMER1A Other Other 1 898 -132 2 872 228 35 0 0 chr12 37710519 37710548 -83546982 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 872 3189 238 135 28 chr12 37710548 37710657 -83546873 + RMER1A Other Other 899 1025 -5 2 872 381 22 0 0 chr12 37710894 37710940 -83546590 + (T)n Simple_repeat Simple_repeat 1 46 0 2 872 4560 37 0 4 chr12 37710966 37711513 -83546017 - L1Md_T LINE L1 -1 6581 6037 2 872 2008 170 254 35 chr12 37711624 37711880 -83545650 + RMER6C LTR ERVK 1 386 -304 2 872 206 81 27 0 chr12 37711880 37711917 -83545613 + (CAGTT)n Simple_repeat Simple_repeat 2 39 0 2 872 2008 170 254 35 chr12 37711917 37712226 -83545304 + RMER6C LTR ERVK 387 689 -1 2 872 328 237 162 42 chr12 37712233 37712400 -83545130 + L1M5 LINE L1 5184 5370 -776 2 872 423 312 105 55 chr12 37712973 37714013 -83543517 - L1M3 LINE L1 -1381 4762 3664 2 872 257 299 174 0 chr12 37714081 37714166 -83543364 + L1MA6 LINE L1 5694 5801 -499 2 872 426 39 0 0 chr12 37714166 37714218 -83543312 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 872 257 299 174 0 chr12 37714218 37714316 -83543214 + L1MA6 LINE L1 5802 5908 -392 2 872 311 316 131 86 chr12 37714587 37714863 -83542667 + L1M4 LINE L1 4616 4879 -1267 2 872 277 42 0 41 chr12 37714863 37714912 -83542618 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 872 311 316 131 86 chr12 37714912 37715054 -83542476 + L1M4 LINE L1 4880 5053 -1093 2 872 483 335 10 67 chr12 37715056 37715264 -83542266 + B3A SINE B2 8 203 -13 2 872 215 157 20 0 chr12 37715270 37715321 -83542209 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 872 6890 114 30 14 chr12 37715486 37716833 -83540697 + Lx LINE L1 5279 6650 -4 2 872 22 0 0 0 chr12 37717115 37717137 -83540393 + AT_rich Low_complexity Low_complexity 1 22 0 2 872 234 254 0 0 chr12 37717623 37717682 -83539848 + MIRb SINE MIR 107 165 -103 3 872 296 336 46 23 chr12 37719822 37719953 -83537577 - B1F SINE Alu -13 136 3 3 872 5488 39 0 3 chr12 37720158 37720822 -83536708 + L1Md_F2 LINE L1 5908 6569 -13 3 872 1263 198 4 18 chr12 37722584 37722857 -83534673 + Lx6 LINE L1 4424 4692 -1188 3 872 2172 228 94 16 chr12 37722834 37723710 -83533820 + Lx6 LINE L1 5347 6273 -1187 3 872 2241 286 98 62 chr12 37723710 37724578 -83532952 + Lx6 LINE L1 6532 7430 -30 3 872 406 266 22 28 chr12 37724857 37725035 -83532495 - L1M5 LINE L1 -844 5302 5126 3 872 235 352 148 0 chr12 37726905 37727027 -83530503 + MIRb SINE MIR 30 169 -99 3 872 338 294 63 8 chr12 37727487 37727614 -83529916 + B1F SINE Alu 1 134 -15 3 872 216 67 0 0 chr12 37727619 37727649 -83529881 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3 872 302 0 0 0 chr12 37728473 37728508 -83529022 - U2 snRNA snRNA -153 35 1 3 872 365 200 46 0 chr12 37730001 37730066 -83527464 + U6 snRNA snRNA 3 70 -37 3 872 331 195 7 52 chr12 37730074 37730209 -83527321 + RMER17A LTR ERVK 336 464 -287 3 872 769 220 93 34 chr12 37730214 37730482 -83527048 + Lx7 LINE L1 7413 7696 0 3 872 21 0 0 0 chr12 37730482 37730503 -83527027 + AT_rich Low_complexity Low_complexity 1 21 0 3 872 231 61 0 0 chr12 37730732 37730765 -83526765 + (TTTAG)n Simple_repeat Simple_repeat 3 35 0 3 872 1027 86 0 7 chr12 37730766 37730906 -83526624 - B1_Mus1 SINE Alu -9 139 1 3 872 285 109 0 0 chr12 37731207 37731253 -83526277 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 872 235 297 25 63 chr12 37731267 37731322 -83526208 + MTE-int LTR MaLR 843 894 -686 3 872 1737 179 157 5 chr12 37731322 37731698 -83525832 + RMER13A LTR ERVK 1 433 -427 3 872 227 370 0 14 chr12 37731685 37731759 -83525771 + MTE-int LTR MaLR 1465 1537 -43 3 872 992 330 26 78 chr12 37731788 37732173 -83525357 + MTEa LTR MaLR 3 367 -12 3 872 431 339 11 21 chr12 37732300 37732487 -83525043 + Lx7 LINE L1 7132 7316 -380 3 872 477 0 0 0 chr12 37732492 37732545 -83524985 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 872 646 261 8 33 chr12 37732849 37733018 -83524512 + ORR1D1 LTR MaLR 5 172 -198 3 872 498 33 0 0 chr12 37733044 37733104 -83524426 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 872 821 234 54 30 chr12 37733105 37733308 -83524222 + ORR1D1 LTR MaLR 167 374 0 3 872 905 251 16 41 chr12 37734791 37735036 -83522494 + Lx7 LINE L1 6817 7055 -641 3 872 447 287 25 27 chr12 37735152 37735332 -83522198 - B3A SINE B2 0 216 38 3 872 259 219 19 25 chr12 37736024 37736114 -83521416 + L1M4 LINE L1 2314 2406 -3740 3 872 1213 112 31 21 chr12 37736237 37736429 -83521101 + B2_Mm2 SINE B2 2 195 0 3 872 204 179 0 0 chr12 37737628 37737667 -83519863 + GA-rich Low_complexity Low_complexity 3 41 0 3 872 319 263 99 20 chr12 37737705 37737806 -83519724 - PB1D7 SINE Alu -2 118 10 3 872 303 248 188 23 chr12 37738864 37738992 -83518538 - B1F SINE Alu 0 149 1 3 872 407 306 106 37 chr12 37739712 37740285 -83517245 - L1M3e LINE L1 -4822 2205 1573 3 872 1721 124 0 19 chr12 37740286 37740549 -83516981 - Lx3B LINE L1 -159 6814 6557 3 872 203 179 0 0 chr12 37741561 37741600 -83515930 + T-rich Low_complexity Low_complexity 1 39 0 3 872 2409 138 12 20 chr12 37741605 37742012 -83515518 - Lx3B LINE L1 -4 6969 6566 3 872 21 57 0 0 chr12 37742016 37742051 -83515479 + AT_rich Low_complexity Low_complexity 1 35 0 3 872 22 0 0 0 chr12 37743274 37743296 -83514234 + AT_rich Low_complexity Low_complexity 1 22 0 3 872 21 0 0 0 chr12 37743334 37743355 -83514175 + AT_rich Low_complexity Low_complexity 1 21 0 3 872 25 0 0 0 chr12 37743671 37743696 -83513834 + AT_rich Low_complexity Low_complexity 1 25 0 3 872 336 322 43 0 chr12 37744338 37744453 -83513077 - B1F1 SINE Alu -1 148 29 3 872 491 303 137 31 chr12 37744542 37744958 -83512572 - L1M4c LINE L1 -2846 3798 3339 3 872 398 321 68 39 chr12 37745568 37745920 -83511610 - L1M4c LINE L1 -4607 2133 1650 3 872 282 279 80 18 chr12 37746009 37746122 -83511408 - L1M4c LINE L1 -5899 643 524 3 872 399 254 16 66 chr12 37746225 37746347 -83511183 + MLT1D LTR MaLR 89 204 -301 3 872 813 268 35 62 chr12 37746601 37746939 -83510591 + RCHARR1 DNA MER1_type 645 973 -1 3 872 25 0 0 0 chr12 37746953 37746978 -83510552 + AT_rich Low_complexity Low_complexity 1 25 0 3 872 816 85 0 0 chr12 37747069 37747187 -83510343 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 3 872 1002 113 7 0 chr12 37747190 37747332 -83510198 - B1_Mus1 SINE Alu -1 147 5 3 872 1118 293 149 27 chr12 37747336 37748010 -83509520 + Lx8 LINE L1 6708 7463 -10 3 873 2840 18 0 0 chr12 37749335 37749673 -83507857 - ORR1A0 LTR MaLR -8 338 1 3 873 22 35 0 0 chr12 37749776 37749805 -83507725 + AT_rich Low_complexity Low_complexity 1 29 0 3 873 5328 258 78 27 chr12 37750103 37751462 -83506068 + Lx6 LINE L1 5822 7271 -189 3 873 7001 91 32 12 chr12 37751462 37752465 -83505065 + RLTR13D5 LTR ERVK 1 1023 0 3 873 5328 258 78 27 chr12 37752465 37752650 -83504880 + Lx6 LINE L1 7272 7444 -16 3 873 601 298 31 0 chr12 37752927 37753118 -83504412 - B3A SINE B2 0 198 2 3 873 3758 175 129 78 chr12 37753202 37754175 -83503355 + RLTR13D2 LTR ERVK 1 1023 0 3 873 492 284 22 0 chr12 37754696 37754830 -83502700 + B1_Mur1 SINE Alu 3 139 -10 3 873 220 224 15 15 chr12 37754850 37754918 -83502612 + (CAAA)n Simple_repeat Simple_repeat 3 70 0 3 873 279 372 22 7 chr12 37756133 37756271 -83501259 + MIR SINE MIR 2 141 -121 3 873 2174 77 0 10 chr12 37756275 37756576 -83500954 + L1_Mus4 LINE L1 6338 6635 -1 3 873 211 340 47 37 chr12 37756910 37757017 -83500513 + PB1D10 SINE Alu 2 109 -8 3 873 282 143 0 0 chr12 37757027 37757076 -83500454 + (CTAA)n Simple_repeat Simple_repeat 3 51 0 3 873 592 279 0 14 chr12 37758206 37758348 -83499182 + RSINE1 SINE B4 26 165 0 3 873 1800 195 13 55 chr12 37758655 37758871 -83498659 + RLTR19A LTR ERVK 133 334 -162 3 873 198 0 0 0 chr12 37758871 37758893 -83498637 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 873 1800 195 13 55 chr12 37758893 37759056 -83498474 + RLTR19A LTR ERVK 335 496 0 3 873 1671 207 47 9 chr12 37759060 37759401 -83498129 + RMER6D LTR ERVK 367 720 0 3 873 462 338 0 0 chr12 37759587 37759726 -83497804 + B1_Mur1 SINE Alu 4 142 -7 3 873 199 87 43 21 chr12 37759755 37759802 -83497728 + A-rich Low_complexity Low_complexity 5 52 0 3 873 974 313 88 78 chr12 37760043 37760836 -83496694 - Tigger7 DNA MER2_type 0 2491 1691 3 873 40 37 0 0 chr12 37761127 37761181 -83496349 + AT_rich Low_complexity Low_complexity 1 54 0 3 873 644 252 0 14 chr12 37761555 37761696 -83495834 - B1_Mur2 SINE Alu -5 144 6 3 873 3500 10 5 0 chr12 37762215 37762609 -83494921 + MTA_Mm LTR MaLR 1 396 0 3 873 24 53 0 0 chr12 37762862 37762900 -83494630 + AT_rich Low_complexity Low_complexity 1 38 0 3 873 1130 316 49 60 chr12 37762989 37763906 -83493624 + Lx8 LINE L1 4969 5874 -1770 3 873 3298 302 69 19 chr12 37763940 37765117 -83492413 + Lx8 LINE L1 6187 7427 -46 3 873 384 22 0 0 chr12 37765117 37765162 -83492368 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 873 396 0 0 0 chr12 37765162 37765205 -83492325 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 873 3298 302 69 19 chr12 37765205 37765251 -83492279 + Lx8 LINE L1 7428 7472 -1 3 873 263 246 98 45 chr12 37765251 37765383 -83492147 + Lx8 LINE L1 7333 7471 -2 3 873 641 238 23 17 chr12 37765627 37765802 -83491728 + Helitron1Nb_Mam RC Helitron 140 315 -801 3 873 303 28 0 0 chr12 37766276 37766312 -83491218 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 873 1065 185 171 4 chr12 37766382 37766615 -83490915 - Lx7 LINE L1 -384 7312 7040 3 873 2631 137 81 9 chr12 37766615 37767073 -83490457 + Lx LINE L1 6158 6648 -6 3 873 1065 177 534 0 chr12 37767073 37767171 -83490359 - Lx7 LINE L1 -657 7039 6890 3 873 293 174 13 92 chr12 37767207 37767250 -83490280 - MTC LTR MaLR 0 421 383 3 873 2639 127 28 12 chr12 37767250 37767680 -83489850 + RLTR9B LTR ERVK 1 437 0 3 873 293 174 13 92 chr12 37767680 37767712 -83489818 - MTC LTR MaLR -39 382 352 3 873 870 10 0 0 chr12 37767738 37767837 -83489693 + (TTTCC)n Simple_repeat Simple_repeat 1 99 0 3 873 1578 241 17 6 chr12 37767854 37768204 -83489326 - MTC LTR MaLR -67 354 1 3 873 317 109 0 0 chr12 37768207 37768251 -83489279 - MTC-int LTR MaLR -3 1255 1212 3 873 1536 233 5 85 chr12 37768251 37768626 -83488904 + ORR1B1 LTR MaLR 1 345 -49 3 873 301 127 0 0 chr12 37768586 37768641 -83488889 - MTC-int LTR MaLR -118 980 926 3 873 472 91 121 33 chr12 37768779 37768870 -83488660 + B1_Mur4 SINE Alu 47 145 -5 3 873 572 116 0 10 chr12 37768918 37769014 -83488516 + (CATA)n Simple_repeat Simple_repeat 4 98 0 3 873 4003 89 23 2 chr12 37769295 37769856 -83487674 + L1_Mus3 LINE L1 6060 6632 -6 3 873 6477 104 54 10 chr12 37769880 37771302 -83486228 + L1_Mus3 LINE L1 5148 6630 -8 3 873 53 30 0 0 chr12 37771306 37771373 -83486157 + AT_rich Low_complexity Low_complexity 1 67 0 3 873 509 189 0 0 chr12 37771373 37771463 -83486067 - BC1_Mm scRNA scRNA -59 93 4 3 873 22 0 0 0 chr12 37771480 37771502 -83486028 + AT_rich Low_complexity Low_complexity 1 22 0 3 873 1989 231 110 50 chr12 37771601 37772393 -83485137 - MTC-int LTR MaLR -205 893 66 3 873 180 0 0 0 chr12 37772394 37772414 -83485116 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 3 873 251 72 0 23 chr12 37772416 37772459 -83485071 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 873 2181 213 7 0 chr12 37772514 37772932 -83484598 - MTC LTR MaLR 0 421 1 3 873 2399 212 188 15 chr12 37772933 37773524 -83484006 - L1_Mur3 LINE L1 -5 5875 5183 3 873 189 0 0 0 chr12 37773528 37773549 -83483981 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 873 471 35 0 0 chr12 37773549 37773605 -83483925 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 873 35 0 0 0 chr12 37773614 37773649 -83483881 + AT_rich Low_complexity Low_complexity 1 35 0 3 873 613 335 35 16 chr12 37773744 37774057 -83483473 - L1MCa LINE L1 -5838 670 352 3 873 200 154 55 55 chr12 37774088 37774143 -83483387 + L3 LINE CR1 4056 4110 -379 3 873 199 164 0 32 chr12 37774341 37774404 -83483126 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 873 414 0 0 0 chr12 37775122 37775168 -83482362 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 873 21 0 0 0 chr12 37775493 37775514 -83482016 + AT_rich Low_complexity Low_complexity 1 21 0 3 873 628 149 0 0 chr12 37775803 37775897 -83481633 + 4.5SRNA scRNA scRNA 1 94 0 3 873 2167 97 1 1 chr12 37776319 37776641 -83480889 - L1_Mus3 LINE L1 -1789 5907 5588 4 873 2581 58 15 3 chr12 37776651 37776994 -83480536 + L1_Mus3 LINE L1 6292 6638 0 4 873 236 264 14 14 chr12 37777691 37777764 -83479766 + GA-rich Low_complexity Low_complexity 2 74 0 4 873 22 0 0 0 chr12 37778306 37778328 -83479202 + AT_rich Low_complexity Low_complexity 1 22 0 4 873 22 0 0 0 chr12 37778440 37778462 -83479068 + AT_rich Low_complexity Low_complexity 1 22 0 4 873 1234 48 0 0 chr12 37778463 37778610 -83478920 + B1_Mm SINE Alu 1 147 0 4 873 512 191 33 20 chr12 37778626 37778776 -83478754 - Lx9 LINE L1 -92 7552 7401 4 873 394 309 28 6 chr12 37779123 37779299 -83478231 - B3A SINE B2 -18 180 1 4 873 375 23 0 0 chr12 37779515 37779559 -83477971 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 873 226 304 162 9 chr12 37779630 37779859 -83477671 + L1M5 LINE L1 5368 5631 -548 4 873 249 152 45 15 chr12 37779932 37779999 -83477531 + GA-rich Low_complexity Low_complexity 5 73 0 4 873 378 171 0 0 chr12 37780075 37780145 -83477385 + GA-rich Low_complexity Low_complexity 4 73 0 4 873 2733 127 22 11 chr12 37781329 37781783 -83475747 - Lx LINE L1 -2 6652 6194 4 873 180 77 0 0 chr12 37781965 37781991 -83475539 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 873 245 343 54 36 chr12 37782830 37782853 -83474677 + B1_Mur1 SINE Alu 35 144 -1 4 873 386 271 0 0 chr12 37782853 37782938 -83474592 + ID_B1 SINE B4 139 223 -1 4 873 229 184 123 62 chr12 37783110 37783191 -83474339 - RMER12 LTR ERVK -563 759 674 4 873 261 221 0 0 chr12 37783214 37783276 -83474254 - MIRc SINE MIR -148 120 56 4 873 231 215 0 0 chr12 37784743 37784808 -83472722 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 873 228 237 0 17 chr12 37784830 37784890 -83472640 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 873 26 30 0 0 chr12 37784966 37784999 -83472531 + AT_rich Low_complexity Low_complexity 1 33 0 4 873 21 36 0 0 chr12 37785076 37785104 -83472426 + AT_rich Low_complexity Low_complexity 1 28 0 4 873 1443 278 12 26 chr12 37786642 37787067 -83470463 - MTD LTR MaLR 0 419 1 4 873 22 0 0 0 chr12 37787128 37787150 -83470380 + AT_rich Low_complexity Low_complexity 1 22 0 4 873 6923 191 35 71 chr12 37787458 37787931 -83469599 + Lx6 LINE L1 4234 4707 -1173 4 873 291 28 0 0 chr12 37787931 37787967 -83469563 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 873 6923 191 35 71 chr12 37787967 37788567 -83468963 + Lx6 LINE L1 4708 5282 -598 4 873 1048 212 18 13 chr12 37788567 37788792 -83468738 + Lx4A LINE L1 6826 7051 -7 4 873 6923 191 35 71 chr12 37788792 37788811 -83468719 + Lx6 LINE L1 5283 5289 -591 4 873 1553 31 0 30 chr12 37788811 37789010 -83468520 + B2_Mm1a SINE B2 1 193 0 4 873 6923 209 46 41 chr12 37789010 37790442 -83467088 + Lx6 LINE L1 5290 6742 -718 4 873 4898 39 0 0 chr12 37790439 37791293 -83466237 + L1Md_F2 LINE L1 5291 6144 -438 4 873 4264 18 10 0 chr12 37791294 37791782 -83465748 + MT2_Mm LTR ERVL 1 493 0 4 873 47247 15 7 0 chr12 37791782 37797106 -83460424 + MERVL-int LTR ERVL 1 5360 -125 4 873 392 167 46 35 chr12 37797106 37797193 -83460337 + ORR1A3-int LTR MaLR 553 640 -1323 4 873 314 0 0 0 chr12 37797193 37797231 -83460299 + MERVL-int LTR ERVL 5448 5485 0 4 873 4264 18 10 0 chr12 37797231 37797719 -83459811 + MT2_Mm LTR ERVL 1 493 0 4 873 3372 62 2 5 chr12 37797719 37798160 -83459370 + L1Md_F2 LINE L1 6141 6580 -2 4 873 3052 226 80 19 chr12 37798170 37798844 -83458686 + Lx6 LINE L1 6741 7455 -5 4 873 421 212 0 0 chr12 37800636 37800716 -83456814 - ORR1D1 LTR MaLR -290 84 5 4 873 580 316 134 39 chr12 37800716 37801105 -83456425 - RMER5 LTR ERV1 -108 426 1 4 873 24 67 0 0 chr12 37801839 37801884 -83455646 + AT_rich Low_complexity Low_complexity 1 45 0 4 873 704 268 71 20 chr12 37802941 37803139 -83454391 + B3 SINE B2 1 208 -8 4 873 2133 117 18 75 chr12 37803159 37803557 -83453973 + Lx LINE L1 6274 6648 -6 4 873 303 191 0 0 chr12 37804492 37804560 -83452970 + A-rich Low_complexity Low_complexity 1 68 0 4 873 214 265 36 12 chr12 37804560 37804644 -83452886 + GA-rich Low_complexity Low_complexity 1 86 0 4 873 367 309 82 44 chr12 37806611 37806667 -83450863 + B4A SINE B4 76 130 -162 4 873 2826 95 5 7 chr12 37806667 37807071 -83450459 + RLTR9D LTR ERVK 1 403 0 4 873 367 309 82 44 chr12 37807071 37807197 -83450333 + B4A SINE B4 131 265 -27 4 873 318 26 0 0 chr12 37808068 37808107 -83449423 + (TAATG)n Simple_repeat Simple_repeat 3 41 0 4 873 180 152 0 0 chr12 37808121 37808154 -83449376 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 873 351 42 62 0 chr12 37808189 37808237 -83449293 - HAL1-3A_ME LINE L1 -833 2025 1975 4 873 198 174 0 0 chr12 37808281 37808327 -83449203 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 873 216 0 0 0 chr12 37808454 37808478 -83449052 + (A)n Simple_repeat Simple_repeat 1 24 0 4 873 1196 121 10 5 chr12 37809330 37809530 -83448000 - Lx2 LINE L1 0 6997 6797 4 873 537 338 46 15 chr12 37809655 37809980 -83447550 - Lx8 LINE L1 -322 7151 6817 4 873 180 0 0 0 chr12 37811031 37811051 -83446479 + (T)n Simple_repeat Simple_repeat 1 20 0 4 873 970 319 107 7 chr12 37811482 37811911 -83445619 - Lx8 LINE L1 -840 6633 6162 4 873 22 56 0 0 chr12 37811911 37811947 -83445583 + AT_rich Low_complexity Low_complexity 1 36 0 4 873 616 107 18 0 chr12 37811952 37812064 -83445466 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 4 873 25 0 0 0 chr12 37812077 37812102 -83445428 + AT_rich Low_complexity Low_complexity 1 25 0 4 873 404 245 41 52 chr12 37812270 37812442 -83445088 - L1MA6 LINE L1 -338 5962 5793 4 873 453 325 149 48 chr12 37812489 37812825 -83444705 - MTD LTR MaLR -17 379 10 4 873 420 273 8 15 chr12 37812988 37813122 -83444408 + L1MA6 LINE L1 6137 6269 -31 4 873 225 372 9 26 chr12 37814090 37814206 -83443324 - MIR SINE MIR -112 150 37 4 873 745 255 21 66 chr12 37814414 37814700 -83442830 + Lx6 LINE L1 7162 7434 -26 4 873 661 44 99 0 chr12 37815571 37815662 -83441868 - B1_Mm SINE Alu -7 140 41 4 873 24 32 0 0 chr12 37815670 37815701 -83441829 + AT_rich Low_complexity Low_complexity 1 31 0 4 873 279 0 0 0 chr12 37815730 37815761 -83441769 + (T)n Simple_repeat Simple_repeat 1 31 0 4 873 24 0 0 0 chr12 37816788 37816812 -83440718 + AT_rich Low_complexity Low_complexity 1 24 0 4 873 953 62 8 0 chr12 37817041 37817170 -83440360 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 4 873 23 33 0 0 chr12 37818038 37818068 -83439462 + AT_rich Low_complexity Low_complexity 1 30 0 4 873 272 290 11 11 chr12 37818163 37818257 -83439273 + CT-rich Low_complexity Low_complexity 4 97 0 4 873 220 273 13 13 chr12 37818902 37818980 -83438550 + GA-rich Low_complexity Low_complexity 2 79 0 4 873 566 101 0 20 chr12 37818980 37819081 -83438449 + (GAAA)n Simple_repeat Simple_repeat 4 102 0 4 873 1502 135 58 14 chr12 37819081 37819359 -83438171 + Lx2A1 LINE L1 6716 7005 -3 4 873 22 0 0 0 chr12 37819414 37819436 -83438094 + AT_rich Low_complexity Low_complexity 1 22 0 4 873 3068 63 35 0 chr12 37819437 37819832 -83437698 - L1_Mus1 LINE L1 0 6567 6159 4 873 4818 78 4 2 chr12 37819832 37820821 -83436709 + L1_Mus1 LINE L1 5162 6151 -416 4 873 345 102 0 0 chr12 37821788 37821847 -83435683 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 873 23 78 0 0 chr12 37822128 37822179 -83435351 + AT_rich Low_complexity Low_complexity 1 51 0 4 873 24 96 0 0 chr12 37822211 37822284 -83435246 + AT_rich Low_complexity Low_complexity 1 73 0 4 873 27 29 0 0 chr12 37822688 37822722 -83434808 + AT_rich Low_complexity Low_complexity 1 34 0 4 873 180 0 0 0 chr12 37822839 37822859 -83434671 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 873 201 74 0 0 chr12 37823349 37823376 -83434154 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 873 1404 149 68 68 chr12 37823472 37823797 -83433733 - ORR1A4 LTR MaLR -4 325 1 4 873 1292 168 20 4 chr12 37823797 37824042 -83433488 - ORR1A4-int LTR MaLR 0 1963 1715 4 873 2673 211 43 5 chr12 37824031 37824576 -83432954 - ORR1A4-int LTR MaLR -1388 575 9 4 873 1830 119 6 71 chr12 37824576 37824928 -83432602 - ORR1A4 LTR MaLR 0 329 1 4 873 6284 222 24 15 chr12 37826005 37827794 -83429736 - Lx5 LINE L1 0 7050 5248 4 873 457 169 0 0 chr12 37827788 37827865 -83429665 + L1_Mur2 LINE L1 4162 4238 -1639 4 873 2074 254 39 16 chr12 37827957 37828468 -83429062 + Lx5 LINE L1 6527 7049 -1 4 873 240 111 0 0 chr12 37829610 37829646 -83427884 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 873 185 0 0 39 chr12 37829668 37829694 -83427836 + (ATG)n Simple_repeat Simple_repeat 3 27 0 4 873 294 167 0 0 chr12 37831075 37831135 -83426395 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 873 24 77 0 0 chr12 37831247 37831299 -83426231 + AT_rich Low_complexity Low_complexity 1 52 0 4 873 209 194 0 0 chr12 37833556 37833592 -83423938 + L3b LINE CR1 331 366 -116 4 873 303 113 0 0 chr12 37835618 37835671 -83421859 + (CCA)n Simple_repeat Simple_repeat 1 53 0 4 873 198 143 0 0 chr12 37836278 37836313 -83421217 + (CGTG)n Simple_repeat Simple_repeat 3 37 0 4 873 526 111 8 49 chr12 37836437 37836560 -83420970 + A-rich Low_complexity Low_complexity 2 119 0 4 873 509 191 0 9 chr12 37837122 37837233 -83420297 + CT-rich Low_complexity Low_complexity 2 111 0 4 873 675 25 0 0 chr12 37840827 37840908 -83416622 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 4 873 262 261 14 55 chr12 37841501 37841574 -83415956 - RSINE1 SINE B4 -21 144 75 4 873 25 65 0 0 chr12 37841826 37841872 -83415658 + AT_rich Low_complexity Low_complexity 1 46 0 4 873 21 0 0 0 chr12 37842032 37842053 -83415477 + AT_rich Low_complexity Low_complexity 1 21 0 4 873 409 331 52 60 chr12 37844323 37844590 -83412940 + Lx8 LINE L1 7192 7456 -17 4 873 460 45 15 15 chr12 37846690 37846758 -83410772 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 873 297 0 0 0 chr12 37847126 37847159 -83410371 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 873 474 18 0 0 chr12 37847175 37847230 -83410300 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 873 511 280 16 16 chr12 37847887 37848014 -83409516 - RSINE1 SINE B4 -38 127 1 4 873 239 215 92 0 chr12 37848143 37848208 -83409322 - L1MC5 LINE L1 -66 7895 7825 4 873 549 329 33 58 chr12 37848319 37848684 -83408846 + Lx9 LINE L1 6830 7185 -459 4 873 230 250 52 10 chr12 37848693 37848790 -83408740 + Lx7 LINE L1 7578 7678 -18 4 873 258 56 0 0 chr12 37848810 37848846 -83408684 + (TTA)n Simple_repeat Simple_repeat 3 38 0 5 873 564 142 23 45 chr12 37848854 37848987 -83408543 - Lx3B LINE L1 -2 6971 6842 5 873 1425 189 25 30 chr12 37848993 37849408 -83408122 - Lx3C LINE L1 -110 6948 6542 5 873 31 26 0 0 chr12 37849640 37849678 -83407852 + AT_rich Low_complexity Low_complexity 1 38 0 5 873 303 296 12 0 chr12 37849686 37849767 -83407763 - MER3 DNA MER1_type -108 101 20 5 873 24 53 0 0 chr12 37850030 37850068 -83407462 + AT_rich Low_complexity Low_complexity 1 38 0 5 873 297 0 0 0 chr12 37850764 37850797 -83406733 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 873 510 61 0 0 chr12 37850802 37850868 -83406662 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 873 292 276 0 0 chr12 37852266 37852342 -83405188 + ID4 SINE ID 5 80 -3 5 873 192 40 0 0 chr12 37853618 37853643 -83403887 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 873 22 0 0 0 chr12 37853824 37853846 -83403684 + AT_rich Low_complexity Low_complexity 1 22 0 5 873 1230 60 30 0 chr12 37854036 37854203 -83403327 - L1_Mus1 LINE L1 -1 6566 6395 5 873 289 372 38 25 chr12 37854233 37854393 -83403137 - RSINE1 SINE B4 -1 164 3 5 873 324 345 0 0 chr12 37854412 37854496 -83403034 + Lx8 LINE L1 7229 7312 -161 5 873 233 0 62 0 chr12 37854513 37854545 -83402985 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 873 369 0 0 0 chr12 37855109 37855150 -83402380 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 873 314 0 0 0 chr12 37855150 37855185 -83402345 + HAL1-3A_ME LINE L1 1976 2010 -848 5 873 465 19 0 0 chr12 37855185 37855239 -83402291 + (CAAAC)n Simple_repeat Simple_repeat 1 54 0 5 873 219 146 0 0 chr12 37855332 37855373 -83402157 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 5 873 324 0 0 0 chr12 37855454 37855490 -83402040 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 873 228 67 0 0 chr12 37855532 37855562 -83401968 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 5 873 3693 78 2 0 chr12 37856601 37857090 -83400440 - L1_Mus2 LINE L1 0 6566 6077 5 873 1226 55 36 0 chr12 37857090 37857255 -83400275 + L1_Mus2 LINE L1 5908 6078 -488 5 873 274 333 66 108 chr12 37857329 37857384 -83400146 - B3A SINE B2 -13 203 157 5 873 504 0 0 0 chr12 37857384 37857440 -83400090 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 873 274 371 66 66 chr12 37857440 37857596 -83399934 - B3A SINE B2 -41 157 1 5 873 339 25 0 0 chr12 37857679 37857719 -83399811 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 873 241 279 0 29 chr12 37858534 37858604 -83398926 + Lx8 LINE L1 7154 7221 -252 5 873 234 0 0 0 chr12 37858606 37858632 -83398898 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 873 892 146 11 0 chr12 37859190 37859368 -83398162 + GA-rich Low_complexity Low_complexity 1 180 0 5 873 37 23 0 0 chr12 37859958 37860002 -83397528 + AT_rich Low_complexity Low_complexity 1 44 0 5 873 234 91 0 0 chr12 37860105 37860138 -83397392 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 873 333 0 0 0 chr12 37860138 37860174 -83397356 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 873 198 0 0 0 chr12 37860174 37860195 -83397335 + (GA)n Simple_repeat Simple_repeat 2 23 0 5 873 436 337 75 12 chr12 37860939 37861194 -83396336 + L1MD LINE L1 2339 2609 -3537 5 873 362 278 98 12 chr12 37861359 37861523 -83396007 + L1MD LINE L1 3311 3488 -2658 5 873 4901 153 50 13 chr12 37861537 37862340 -83395190 - L1_Mur2 LINE L1 -520 5357 4522 5 873 2771 123 18 7 chr12 37862340 37862774 -83394756 - L1_Mus3 LINE L1 0 6638 6200 5 873 4901 153 50 13 chr12 37862774 37862911 -83394619 - L1_Mur2 LINE L1 -1356 4521 4382 5 873 6936 122 19 2 chr12 37862901 37864118 -83393412 + Lx LINE L1 5411 6648 -6 5 873 413 298 23 51 chr12 37865125 37865302 -83392228 + Lx8 LINE L1 6476 6647 -826 5 873 863 222 107 53 chr12 37865334 37865596 -83391934 - RLTR17 LTR ERVK -77 615 340 5 873 1222 348 47 23 chr12 37865608 37866379 -83391151 + Lx8 LINE L1 6675 7463 -10 5 873 230 228 18 0 chr12 37866463 37866520 -83391010 + CT-rich Low_complexity Low_complexity 3 60 0 5 873 830 304 49 44 chr12 37867596 37867961 -83389569 - Lx9 LINE L1 -314 7330 6964 5 873 731 304 9 14 chr12 37868012 37868222 -83389308 - ID_B1 SINE B4 -5 219 11 5 873 24 0 0 0 chr12 37869365 37869389 -83388141 + AT_rich Low_complexity Low_complexity 1 24 0 5 873 186 43 0 0 chr12 37870535 37870558 -83386972 + (TATAA)n Simple_repeat Simple_repeat 2 24 0 5 873 1033 90 14 0 chr12 37871113 37871257 -83386273 + B1_Mm SINE Alu 2 147 0 5 873 1106 67 0 0 chr12 37872680 37872815 -83384715 + B1_Mus1 SINE Alu 1 135 -13 5 873 561 68 0 0 chr12 37872815 37872889 -83384641 + (CAAAA)n Simple_repeat Simple_repeat 1 74 0 5 873 413 211 0 0 chr12 37873151 37873227 -83384303 + PB1D10 SINE Alu 1 76 -41 5 873 438 20 0 0 chr12 37873249 37873300 -83384230 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 873 203 133 22 22 chr12 37873810 37873856 -83383674 + A-rich Low_complexity Low_complexity 4 49 0 5 873 320 284 14 69 chr12 37873876 37874020 -83383510 - Lx7 LINE L1 -358 7338 7203 5 873 566 96 10 0 chr12 37874084 37874188 -83383342 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 873 28575 6 0 1 chr12 37874369 37877604 -83379926 + L1_Mm LINE L1 2352 5586 -297 5 873 9032 2 0 0 chr12 37877604 37878600 -83378930 + L1Md_A LINE L1 5587 6582 0 5 873 28575 6 0 1 chr12 37878600 37878611 -83378919 + L1_Mm LINE L1 5587 5596 -287 5 873 1450 119 66 123 chr12 37879274 37879608 -83377922 - Lx2A LINE L1 0 7008 6694 5 874 243 0 0 0 chr12 37879811 37879838 -83377692 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 5 874 636 241 91 24 chr12 37880455 37880752 -83376778 - Lx7 LINE L1 -8 7688 7372 5 874 303 306 96 15 chr12 37881068 37881204 -83376326 + MER53 DNA hAT 39 185 -8 5 874 37963 30 0 0 chr12 37881366 37888154 -83369376 - L1Md_T LINE L1 0 6585 1 5 874 1034 29 0 0 chr12 37889197 37889333 -83368197 - MusHAL1 LINE L1 -759 1953 1818 5 874 2847 82 15 7 chr12 37889330 37889734 -83367796 + MusHAL1 LINE L1 1433 1839 -873 5 874 273 114 0 0 chr12 37889775 37889805 -83367725 + (TCC)n Simple_repeat Simple_repeat 2 31 0 5 874 306 0 0 0 chr12 37889805 37889839 -83367691 + (CTA)n Simple_repeat Simple_repeat 3 36 0 5 874 273 114 0 0 chr12 37889839 37889852 -83367678 + (TCC)n Simple_repeat Simple_repeat 1 13 0 5 874 290 342 17 26 chr12 37889967 37890084 -83367446 - PB1D7 SINE Alu 0 120 5 5 874 580 121 0 0 chr12 37891603 37891694 -83365836 - Lx3A LINE L1 -450 6531 6441 5 874 879 85 32 19 chr12 37891689 37891845 -83365685 + Lx3_Mus LINE L1 6831 6988 -21 5 874 320 41 0 39 chr12 37891845 37891896 -83365634 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 5 874 348 24 0 0 chr12 37892006 37892047 -83365483 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 874 557 64 0 13 chr12 37893633 37893712 -83363818 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 874 22 0 0 0 chr12 37895313 37895335 -83362195 + AT_rich Low_complexity Low_complexity 1 22 0 5 874 468 0 0 0 chr12 37895834 37895886 -83361644 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 874 250 192 13 40 chr12 37896332 37896408 -83361122 + A-rich Low_complexity Low_complexity 6 79 0 5 874 1002 65 7 0 chr12 37896524 37896663 -83360867 - L1_Mus2 LINE L1 0 6566 6427 5 874 398 334 92 103 chr12 37897633 37897993 -83359537 - MLT1A0 LTR MaLR -2 363 8 5 874 432 0 0 0 chr12 37898687 37898735 -83358795 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 874 259 193 18 0 chr12 37898821 37898878 -83358652 - L1_Mm LINE L1 -1228 4655 4598 5 874 5659 38 3 6 chr12 37898885 37899575 -83357955 - L1Md_F2 LINE L1 -13 6569 5882 5 874 28 29 0 0 chr12 37900309 37900344 -83357186 + AT_rich Low_complexity Low_complexity 1 35 0 5 874 24 0 0 0 chr12 37900366 37900390 -83357140 + AT_rich Low_complexity Low_complexity 1 24 0 5 874 943 197 23 14 chr12 37900623 37900844 -83356686 + URR1B DNA MER1_type 1 223 -2 5 874 342 0 0 0 chr12 37901133 37901171 -83356359 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 874 316 314 0 0 chr12 37902454 37902540 -83354990 - Lx6 LINE L1 -615 6845 6760 5 874 549 105 0 0 chr12 37902600 37902695 -83354835 + (GA)n Simple_repeat Simple_repeat 2 96 0 5 874 294 264 65 11 chr12 37904171 37904263 -83353267 + MER47C DNA MER2_type 1 97 0 5 874 666 95 0 0 chr12 37907864 37907959 -83349571 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 5 874 689 142 0 14 chr12 37908477 37908620 -83348910 - Lx3A LINE L1 0 6981 6841 5 874 495 306 119 0 chr12 37909772 37909965 -83347565 - Lx6 LINE L1 -16 7444 7229 5 874 3232 261 40 82 chr12 37909963 37910167 -83347363 - Lx5 LINE L1 -374 6676 6504 5 874 1130 108 11 0 chr12 37910167 37910343 -83347187 + (TTTTC)n Simple_repeat Simple_repeat 3 180 0 5 874 8524 214 46 34 chr12 37910343 37912498 -83345032 - Lx5 LINE L1 -547 6503 4301 5 874 2474 42 16 192 chr12 37912498 37912941 -83344589 - RLTR10B2 LTR ERVK 0 365 1 5 874 8524 194 48 14 chr12 37912941 37913337 -83344193 - Lx5 LINE L1 -1577 4300 3904 5 874 583 323 5 65 chr12 37913975 37914174 -83343356 + B3A SINE B2 1 187 -11 5 874 21 89 0 0 chr12 37914242 37914298 -83343232 + AT_rich Low_complexity Low_complexity 1 56 0 5 874 180 0 0 0 chr12 37914868 37914888 -83342642 + (T)n Simple_repeat Simple_repeat 1 20 0 5 874 420 264 177 6 chr12 37916963 37917127 -83340403 - L1MA6 LINE L1 -77 6223 6032 5 874 37868 10 0 0 chr12 37917271 37922651 -83334879 + L1Md_T LINE L1 208 5586 -297 5 874 7988 56 0 0 chr12 37922651 37923647 -83333883 + L1Md_T LINE L1 5587 6582 0 5 874 7247 1 0 0 chr12 37923651 37924451 -83333079 + L1Md_A LINE L1 5783 6582 0 5 874 267 30 103 15 chr12 37924668 37924736 -83332794 + (CAAAA)n Simple_repeat Simple_repeat 3 76 0 5 874 266 306 18 36 chr12 37924839 37924951 -83332579 + L1M2 LINE L1 5745 5854 -446 5 874 432 123 0 0 chr12 37925191 37925264 -83332266 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 874 19932 64 15 58 chr12 37925358 37926278 -83331252 - L1_Mus2 LINE L1 -1 6565 5678 5 874 1787 39 21 4 chr12 37926278 37926513 -83331017 + L1Md_F3 LINE L1 6344 6582 -2 5 874 19932 185 17 54 chr12 37926513 37927657 -83329873 - L1_Mus2 LINE L1 -200 5677 4549 5 874 768 84 17 7 chr12 37927657 37927774 -83329756 - B1_Mm SINE Alu 0 147 2 6 874 19932 185 17 54 chr12 37927774 37929461 -83328069 - L1_Mus2 LINE L1 -200 4548 2883 5 874 711 35 0 0 chr12 37929461 37929547 -83327983 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 6 874 19932 185 17 54 chr12 37929547 37930835 -83326695 - L1_Mus2 LINE L1 -2995 2882 1578 5 874 38058 39 0 3 chr12 37930839 37937050 -83320480 - L1Md_T LINE L1 0 6585 298 6 874 2968 126 9 9 chr12 37937052 37937962 -83319568 - L1VL4 LINE L1 -2321 1496 575 6 874 395 289 35 14 chr12 37938022 37938166 -83319364 - L1VL4 LINE L1 -5795 724 578 6 874 34 79 0 0 chr12 37939851 37939927 -83317603 + AT_rich Low_complexity Low_complexity 1 76 0 6 874 243 261 46 0 chr12 37939987 37940117 -83317413 + (TTAA)n Simple_repeat Simple_repeat 2 137 0 6 874 977 246 132 91 chr12 37940178 37940594 -83316936 - RMER1C Other Other -15 1327 895 6 874 3929 60 0 29 chr12 37940599 37941155 -83316375 + L1_Mus1 LINE L1 6059 6567 0 6 874 192 152 0 0 chr12 37942639 37942672 -83314858 + T-rich Low_complexity Low_complexity 3 35 0 6 874 194 0 39 0 chr12 37942672 37942698 -83314832 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 6 874 394 322 103 13 chr12 37943308 37943541 -83313989 + ORR1E LTR MaLR 3 256 -103 6 874 364 339 84 2 chr12 37945018 37945194 -83312336 + MTE2a LTR MaLR 3 196 -183 6 874 5247 125 17 1 chr12 37945194 37946017 -83311513 + Lx3_Mus LINE L1 6154 6989 -20 6 874 195 42 0 0 chr12 37946017 37946041 -83311489 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 6 874 369 224 97 44 chr12 37946245 37946381 -83311149 + MTE2a LTR MaLR 263 405 -14 6 874 443 371 4 9 chr12 37946393 37946624 -83310906 - Lx8 LINE L1 -1078 6395 6166 6 874 3406 250 37 48 chr12 37946702 37947626 -83309904 - RMER1B Other Other -2 1064 151 6 874 1002 287 62 24 chr12 37947615 37947904 -83309626 - RMER1B Other Other -710 356 57 6 874 489 305 72 42 chr12 37948043 37948444 -83309086 + L1MC2 LINE L1 5731 6143 -201 6 874 235 342 24 37 chr12 37948936 37949018 -83308512 - ID4_ SINE ID 0 83 3 6 874 215 31 31 0 chr12 37949824 37949856 -83307674 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 874 646 274 93 21 chr12 37950818 37951134 -83306396 + ORR1D2 LTR MaLR 1 363 -7 6 874 494 375 75 8 chr12 37951173 37951544 -83305986 + L1MD LINE L1 2434 2829 -3317 6 874 654 275 23 32 chr12 37951578 37951796 -83305734 + B3 SINE B2 1 216 0 6 874 2293 151 16 5 chr12 37951829 37952209 -83305321 + ORR1B1 LTR MaLR 1 384 -10 6 874 5671 152 41 2 chr12 37952209 37953200 -83304330 - L1_Mur1 LINE L1 -288 5598 4569 6 874 4034 205 68 4 chr12 37953196 37954249 -83303281 + Lx3C LINE L1 5762 6927 -54 6 874 3186 147 52 7 chr12 37954265 37954822 -83302708 + Lx2 LINE L1 5779 6360 -637 6 874 27 0 0 0 chr12 37954822 37954849 -83302681 + AT_rich Low_complexity Low_complexity 1 27 0 6 874 372 306 59 35 chr12 37955259 37955462 -83302068 + L1M5 LINE L1 5283 5490 -689 6 874 1131 265 117 8 chr12 37955469 37955846 -83301684 + Lx9 LINE L1 7221 7638 -6 6 874 450 127 0 0 chr12 37956968 37957039 -83300491 + (TAA)n Simple_repeat Simple_repeat 1 71 0 6 874 24 0 0 0 chr12 37957625 37957649 -83299881 + AT_rich Low_complexity Low_complexity 1 24 0 6 874 626 300 175 92 chr12 37957805 37958102 -83299428 + MTD LTR MaLR 1 338 -81 6 874 378 0 0 0 chr12 37958102 37958144 -83299386 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 874 626 300 175 92 chr12 37958144 37958228 -83299302 + MTD LTR MaLR 339 414 -5 6 874 954 243 196 46 chr12 37958234 37958622 -83298908 + MTD-int LTR MaLR 1 446 -812 6 874 203 79 26 0 chr12 37958622 37958660 -83298870 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 874 824 142 78 0 chr12 37958731 37958872 -83298658 - RMER6C LTR ERVK 0 690 539 6 874 593 122 27 35 chr12 37958952 37959078 -83298452 - RMER6C LTR ERVK -488 232 101 6 874 552 295 11 62 chr12 37959074 37959251 -83298279 + MTD-int LTR MaLR 1151 1318 -645 6 874 649 254 123 35 chr12 37959255 37959483 -83298047 + MTD LTR MaLR 172 419 0 6 874 471 288 32 52 chr12 37960178 37960332 -83297198 + Lx7 LINE L1 6536 6686 -1010 6 874 1788 318 75 27 chr12 37960624 37961526 -83296004 + Lx9 LINE L1 6492 7437 -207 6 874 387 0 0 0 chr12 37961546 37961589 -83295941 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 874 24 0 0 0 chr12 37962180 37962204 -83295326 + AT_rich Low_complexity Low_complexity 1 24 0 6 874 237 204 122 22 chr12 37962920 37963010 -83294520 + L1MC LINE L1 5521 5619 -725 6 874 1196 182 253 30 chr12 37964081 37964381 -83293149 + ORR1B2 LTR MaLR 1 367 0 6 874 268 427 82 16 chr12 37964850 37965155 -83292375 + LTR33A LTR ERVL 165 489 -31 6 874 1474 91 8 51 chr12 37965233 37965488 -83292042 + L1_Mus3 LINE L1 6395 6638 0 6 874 251 311 54 0 chr12 37965930 37966004 -83291526 + Tigger9b DNA MER2_type 5 82 -542 6 874 3129 28 0 5 chr12 37966139 37966535 -83290995 + ORR1A1-int LTR MaLR 1173 1566 -226 6 874 428 227 34 0 chr12 37966652 37966740 -83290790 + MTEb LTR MaLR 3 93 -286 6 874 350 270 0 0 chr12 37966735 37966809 -83290721 + RLTR18 LTR ERVK 5 78 -538 6 874 494 303 76 49 chr12 37967198 37967382 -83290148 + RLTR18 LTR ERVK 428 616 0 6 874 849 314 3 78 chr12 37967395 37967678 -83289852 + MTEb LTR MaLR 110 371 -8 6 874 338 226 45 13 chr12 37969524 37969681 -83287849 + (TATAA)n Simple_repeat Simple_repeat 2 163 0 6 874 24 0 0 0 chr12 37969978 37970002 -83287528 + AT_rich Low_complexity Low_complexity 1 24 0 6 874 989 142 17 0 chr12 37970664 37970840 -83286690 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 6 874 5509 79 0 3 chr12 37972434 37973167 -83284363 + L1Md_F2 LINE L1 5850 6580 -2 6 874 201 132 0 0 chr12 37973432 37973470 -83284060 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 874 390 57 0 0 chr12 37973470 37973523 -83284007 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 874 216 0 0 0 chr12 37973578 37973602 -83283928 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 874 1016 52 15 0 chr12 37973602 37973730 -83283800 - B1_Mm SINE Alu -7 140 11 6 874 270 175 56 101 chr12 37973650 37973739 -83283791 - 4.5SRNA scRNA scRNA -8 86 2 6 874 224 200 18 0 chr12 37974841 37974896 -83282634 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 874 25 0 0 0 chr12 37975493 37975518 -83282012 + AT_rich Low_complexity Low_complexity 1 25 0 6 874 194 0 39 0 chr12 37977467 37977493 -83280037 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 874 618 277 15 65 chr12 37978119 37978320 -83279210 - B3A SINE B2 -4 194 4 6 874 1086 51 0 0 chr12 37979971 37980108 -83277422 + (GGAA)n Simple_repeat Simple_repeat 4 140 0 6 874 642 26 0 0 chr12 37980432 37980508 -83277022 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 874 335 23 23 0 chr12 37980561 37980605 -83276925 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 874 227 250 119 48 chr12 37982315 37982399 -83275131 + B1F SINE Alu 33 122 -27 6 874 1600 289 106 72 chr12 37982525 37983284 -83274246 - MTEb-int LTR MaLR -766 814 1 6 874 315 270 44 11 chr12 37983292 37983382 -83274148 - MTEb LTR MaLR -8 371 279 6 874 198 0 0 0 chr12 37984142 37984164 -83273366 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 874 185 294 174 35 chr12 37985902 37986103 -83271427 - MIR SINE MIR -2 260 32 6 874 538 233 22 84 chr12 37986116 37986176 -83271354 + ID SINE ID 32 80 -144 6 874 949 65 8 1 chr12 37986176 37986315 -83271215 + B1_Mus2 SINE Alu 1 148 -1 6 874 24 53 0 0 chr12 37986450 37986488 -83271042 + AT_rich Low_complexity Low_complexity 1 38 0 6 874 24 0 0 0 chr12 37987644 37987668 -83269862 + AT_rich Low_complexity Low_complexity 1 24 0 6 874 1695 55 0 9 chr12 37987907 37988126 -83269404 - L1Md_F2 LINE L1 -12 6570 6354 6 874 24 0 0 0 chr12 37988595 37988619 -83268911 + AT_rich Low_complexity Low_complexity 1 24 0 6 874 22 35 0 0 chr12 37989551 37989580 -83267950 + AT_rich Low_complexity Low_complexity 1 29 0 6 874 289 270 87 13 chr12 37989753 37989903 -83267627 - L1MA8 LINE L1 -173 6118 5958 6 874 516 235 0 29 chr12 37990132 37990237 -83267293 + PB1D10 SINE Alu 16 117 0 6 874 495 48 0 0 chr12 37990241 37990303 -83267227 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 874 227 304 0 14 chr12 37992669 37992739 -83264791 + CT-rich Low_complexity Low_complexity 1 69 0 6 874 350 311 64 21 chr12 37992901 37993088 -83264442 - L1MA9 LINE L1 -73 6239 6045 6 874 247 160 64 39 chr12 37993163 37993241 -83264289 - L1MA9 LINE L1 -406 5906 5827 6 874 279 309 54 27 chr12 37993638 37993843 -83263687 - L1MA9 LINE L1 -530 5782 5569 6 874 696 291 53 28 chr12 37994096 37994489 -83263041 - L1MA9 LINE L1 -877 5263 4861 6 874 23 33 0 0 chr12 37994594 37994624 -83262906 + AT_rich Low_complexity Low_complexity 1 30 0 6 874 469 213 0 20 chr12 37994977 37995115 -83262415 + GA-rich Low_complexity Low_complexity 4 139 0 6 874 1182 100 0 0 chr12 37995115 37995295 -83262235 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 874 469 213 0 20 chr12 37995295 37995309 -83262221 + polypurine Low_complexity Low_complexity 140 152 0 6 874 600 14 0 0 chr12 37995898 37995967 -83261563 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 6 874 293 93 19 0 chr12 37996893 37996947 -83260583 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 874 21 57 0 0 chr12 37996999 37997034 -83260496 + AT_rich Low_complexity Low_complexity 1 35 0 6 874 228 319 55 0 chr12 38000177 38000268 -83257262 + ID_B1 SINE B4 127 222 -2 1 874 228 182 0 0 chr12 38000268 38000312 -83257218 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 874 206 93 44 44 chr12 38000313 38000387 -83257143 + A-rich Low_complexity Low_complexity 1 74 0 3 874 1588 158 110 18 chr12 38000587 38000923 -83256607 + Lx2 LINE L1 6631 6997 0 4 874 198 71 0 0 chr12 38001649 38001677 -83255853 + (TGG)n Simple_repeat Simple_repeat 1 28 0 5 874 274 111 0 6 chr12 38002345 38002402 -83255128 - L1_Mus2 LINE L1 0 6567 6513 6 874 2432 76 18 0 chr12 38002481 38002810 -83254720 - Lx LINE L1 -719 5935 5601 7 874 686 169 7 7 chr12 38002810 38002947 -83254583 + Lx LINE L1 6514 6650 -4 8 874 210 118 0 0 chr12 38003170 38003204 -83254326 + (A)n Simple_repeat Simple_repeat 1 34 0 9 874 989 234 70 40 chr12 38003649 38003947 -83253583 - MTD LTR MaLR -2 417 111 1 874 2563 75 41 0 chr12 38003948 38004328 -83253202 - L1_Mus3 LINE L1 -693 5945 5552 1 874 4133 102 18 2 chr12 38004328 38004927 -83252603 + L1_Mus3 LINE L1 5947 6555 -83 1 874 792 181 0 98 chr12 38007207 38007421 -83250109 + B2_Mm2 SINE B2 2 194 -1 1 874 243 222 128 43 chr12 38007658 38007752 -83249778 - MTEb LTR MaLR -5 374 273 1 874 563 314 39 13 chr12 38007776 38007931 -83249599 - MTEb LTR MaLR -203 176 18 1 874 22 56 0 0 chr12 38008394 38008430 -83249100 + AT_rich Low_complexity Low_complexity 1 36 0 1 874 280 323 55 31 chr12 38009058 38009076 -83248454 - RMER15 LTR ERVL -28 547 529 1 874 3213 48 8 0 chr12 38009076 38009469 -83248061 - MTA_Mm LTR MaLR 0 396 1 1 874 280 323 55 31 chr12 38009469 38009578 -83247952 - RMER15 LTR ERVL -47 528 417 1 874 285 100 0 0 chr12 38009839 38009889 -83247641 + (TTAG)n Simple_repeat Simple_repeat 3 52 0 1 874 875 252 5 38 chr12 38009889 38010099 -83247431 - B3 SINE B2 -12 204 2 1 874 233 304 14 14 chr12 38010102 38010172 -83247358 - LTR40a LTR ERVL -271 248 179 1 109 578 310 23 47 chr12 38010627 38010883 -83246647 + MLT1A0 LTR MaLR 144 384 -6 2 875 444 282 23 29 chr12 38010988 38011163 -83246367 - MER121 Unknown Unknown -140 272 99 2 875 982 220 42 0 chr12 38011601 38011815 -83245715 - URR1A DNA MER1_type -3 223 1 2 875 347 187 9 0 chr12 38012375 38012482 -83245048 + GA-rich Low_complexity Low_complexity 1 108 0 2 875 774 156 11 17 chr12 38012926 38013038 -83244492 + polypyrimidine Low_complexity Low_complexity 65 178 0 2 875 1635 161 39 60 chr12 38013038 38013374 -83244156 + ORR1A4 LTR MaLR 1 329 0 2 875 774 156 11 17 chr12 38013374 38013437 -83244093 + polypyrimidine Low_complexity Low_complexity 5 64 0 2 875 712 308 88 28 chr12 38014274 38014558 -83242972 + ORR1E LTR MaLR 11 311 -48 2 875 962 262 83 22 chr12 38014568 38014892 -83242638 + MTE-int LTR MaLR 1 344 -1236 2 875 993 314 47 6 chr12 38014892 38015232 -83242298 + Lx7 LINE L1 6961 7314 -382 2 875 266 168 112 4 chr12 38015304 38015391 -83242139 + Lx7 LINE L1 7366 7445 -28 2 875 630 143 60 33 chr12 38015397 38015562 -83241968 + Lx LINE L1 6487 6647 -7 3 875 2043 326 133 25 chr12 38015688 38016674 -83240856 + MTE-int LTR MaLR 461 1552 -28 2 875 877 216 72 0 chr12 38016678 38016872 -83240658 - ORR1C2 LTR MaLR -2 382 175 3 875 843 145 0 27 chr12 38016878 38017062 -83240468 + GA-rich Low_complexity Low_complexity 2 180 0 3 875 317 236 0 0 chr12 38017062 38017134 -83240396 + A-rich Low_complexity Low_complexity 1 72 0 3 875 662 249 24 104 chr12 38017134 38017345 -83240185 - ORR1C2 LTR MaLR -190 194 1 3 875 759 149 56 112 chr12 38017394 38017590 -83239940 - B2_Mm2 SINE B2 -5 190 6 3 875 566 285 72 40 chr12 38017592 38017858 -83239672 + MTEb LTR MaLR 63 371 -8 3 875 213 317 0 73 chr12 38018461 38018529 -83239001 + ID SINE ID 13 75 -149 3 875 257 344 0 0 chr12 38018469 38018533 -83238997 + ID4 SINE ID 15 78 -5 3 875 257 305 0 35 chr12 38019801 38019886 -83237644 + AmnSINE1 SINE SINE 227 308 -267 3 875 270 178 33 0 chr12 38022476 38022566 -83234964 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 3 875 21 0 0 0 chr12 38022950 38022971 -83234559 + AT_rich Low_complexity Low_complexity 1 21 0 4 875 324 295 7 109 chr12 38023145 38023282 -83234248 + MT2B LTR ERVL 142 264 -337 4 875 647 281 7 0 chr12 38023177 38023316 -83234214 + B1_Mus2 SINE Alu 7 146 -1 4 875 222 37 0 0 chr12 38023326 38023353 -83234177 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 875 33 66 0 0 chr12 38025141 38025202 -83232328 + AT_rich Low_complexity Low_complexity 1 61 0 4 875 337 311 81 45 chr12 38025208 38025430 -83232100 - L1ME3 LINE L1 -44 6118 5889 4 875 4396 67 0 0 chr12 38025820 38026376 -83231154 - L1_Mus2 LINE L1 -1 6565 6010 4 875 3718 160 123 55 chr12 38028135 38029086 -83228444 - Lx4A LINE L1 -12 7046 6050 4 875 254 141 0 27 chr12 38029086 38029159 -83228371 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 4 875 245 29 29 0 chr12 38029225 38029259 -83228271 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 875 318 132 0 0 chr12 38029939 38029992 -83227538 + (CAT)n Simple_repeat Simple_repeat 2 54 0 5 875 304 331 65 0 chr12 38030058 38030197 -83227333 + Lx7 LINE L1 7219 7366 -330 5 875 2947 31 0 6 chr12 38030357 38030714 -83226816 - L1Md_F2 LINE L1 -9 6573 6219 5 875 357 282 99 27 chr12 38031075 38031248 -83226282 - MTEb LTR MaLR 0 379 207 5 875 510 61 0 0 chr12 38031586 38031652 -83225878 + (TCC)n Simple_repeat Simple_repeat 3 68 0 5 875 964 291 75 14 chr12 38032448 38032787 -83224743 + ORR1D2 LTR MaLR 3 374 0 5 875 2521 70 26 6 chr12 38034901 38035246 -83222284 - L1Md_F2 LINE L1 -288 6294 5943 5 875 757 81 0 10 chr12 38035245 38035345 -83222185 + L1_Mus1 LINE L1 6309 6407 -160 5 875 21 36 0 0 chr12 38036291 38036319 -83221211 + AT_rich Low_complexity Low_complexity 1 28 0 5 875 1113 90 0 0 chr12 38037063 38037208 -83220322 - B1_Mus2 SINE Alu 0 147 3 5 875 345 24 0 0 chr12 38039374 38039416 -83218114 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 875 287 267 0 13 chr12 38039420 38039496 -83218034 + (CATA)n Simple_repeat Simple_repeat 2 76 0 6 875 195 100 0 0 chr12 38039994 38040024 -83217506 + (CATATA)n Simple_repeat Simple_repeat 5 34 0 6 875 524 65 13 0 chr12 38040034 38040111 -83217419 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 6 875 438 342 39 0 chr12 38041249 38041404 -83216126 + B3A SINE B2 1 161 -37 6 875 2114 186 15 15 chr12 38041883 38042277 -83215253 + ORR1B1 LTR MaLR 1 394 0 6 875 21 0 0 0 chr12 38042286 38042307 -83215223 + AT_rich Low_complexity Low_complexity 1 21 0 6 875 3055 156 66 19 chr12 38042308 38042897 -83214633 - Lx4A LINE L1 -2 7056 6440 6 875 294 29 0 0 chr12 38043547 38043582 -83213948 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 6 875 1586 100 25 4 chr12 38043587 38043827 -83213703 - Lx3A LINE L1 -16 6965 6721 6 875 8054 140 19 11 chr12 38044217 38045769 -83211761 - Lx2 LINE L1 -1 6996 5025 7 875 25 95 0 0 chr12 38045881 38045955 -83211575 + AT_rich Low_complexity Low_complexity 1 74 0 7 875 278 26 0 25 chr12 38046138 38046178 -83211352 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 875 813 283 14 8 chr12 38046228 38046569 -83210961 - Lx9 LINE L1 -1677 5967 5604 7 875 318 297 71 0 chr12 38046565 38046720 -83210810 + L1M2 LINE L1 5123 5288 -855 7 875 218 385 0 25 chr12 38047799 38047879 -83209651 + ID4 SINE ID 5 82 -1 7 875 295 261 22 11 chr12 38047890 38047979 -83209551 - L1Md_F LINE L1 -5852 667 578 7 875 3525 62 0 0 chr12 38048035 38048473 -83209057 + L1_Mus1 LINE L1 6054 6491 -76 7 875 347 373 43 0 chr12 38052000 38052185 -83205345 - L1M4 LINE L1 -886 5260 5068 7 875 234 269 7 20 chr12 38052354 38052442 -83205088 + CT-rich Low_complexity Low_complexity 1 86 0 7 875 25 31 0 0 chr12 38052619 38052651 -83204879 + AT_rich Low_complexity Low_complexity 1 32 0 8 875 330 319 129 10 chr12 38052704 38052897 -83204633 + B3 SINE B2 1 216 0 8 875 239 288 0 43 chr12 38053173 38053283 -83204247 + GA-rich Low_complexity Low_complexity 1 105 0 8 875 485 372 0 0 chr12 38053409 38053597 -83203933 - MTE2b LTR MaLR -189 190 3 8 875 2090 291 43 24 chr12 38053665 38054331 -83203199 - MTE-int LTR MaLR -76 1504 826 8 875 34 24 0 0 chr12 38054945 38054986 -83202544 + AT_rich Low_complexity Low_complexity 1 41 0 8 875 1453 124 17 8 chr12 38054987 38055223 -83202307 - Lx LINE L1 -4 7005 6768 8 875 14322 118 55 13 chr12 38055240 38058336 -83199194 - L1_Mur1 LINE L1 -2380 3506 5 8 875 231 245 19 0 chr12 38059805 38059858 -83197672 - MLT1A0 LTR MaLR -186 179 126 8 875 25 0 0 0 chr12 38060140 38060165 -83197365 + AT_rich Low_complexity Low_complexity 1 25 0 8 875 5201 124 0 29 chr12 38060177 38061001 -83196529 - Lx LINE L1 0 6654 5855 8 875 267 274 80 54 chr12 38061074 38061186 -83196344 + ID_B1 SINE B4 106 220 -4 9 875 206 238 0 0 chr12 38061188 38061230 -83196300 + A-rich Low_complexity Low_complexity 3 44 0 9 875 243 0 0 0 chr12 38061248 38061275 -83196255 + (T)n Simple_repeat Simple_repeat 1 27 0 9 875 2982 81 2 0 chr12 38062437 38062832 -83194698 + MTA_Mm LTR MaLR 1 396 0 9 875 334 310 0 0 chr12 38062939 38063026 -83194504 - B3A SINE B2 -74 124 38 9 875 21 0 0 0 chr12 38063146 38063167 -83194363 + AT_rich Low_complexity Low_complexity 1 21 0 9 875 462 18 0 0 chr12 38063252 38063307 -83194223 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 875 411 309 115 10 chr12 38063715 38064019 -83193511 - L1MA4A LINE L1 -369 5934 5599 9 875 607 202 15 30 chr12 38064063 38064196 -83193334 - RMER20B LTR ERVK -385 131 1 9 875 565 269 157 19 chr12 38064200 38064696 -83192834 - L1MA4A LINE L1 -1330 4813 4225 9 875 22 0 0 0 chr12 38066320 38066342 -83191188 + AT_rich Low_complexity Low_complexity 1 22 0 9 875 709 79 0 56 chr12 38069832 38069845 -83187685 - L1Md_F2 LINE L1 -193 6389 6380 1 875 4377 79 3 20 chr12 38069845 38070450 -83187080 - L1Md_F2 LINE L1 -4 6578 5984 1 875 709 79 0 56 chr12 38070450 38070543 -83186987 - L1Md_F2 LINE L1 -203 6379 6289 1 875 954 83 0 0 chr12 38070538 38070658 -83186872 + L1Md_F2 LINE L1 6168 6287 -297 1 875 360 0 0 0 chr12 38070752 38070792 -83186738 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 875 339 358 98 81 chr12 38070848 38071340 -83186190 - MLT1F2 LTR MaLR -39 521 22 1 875 657 126 0 0 chr12 38071621 38071732 -83185798 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 875 512 293 70 0 chr12 38071732 38071889 -83185641 - B3 SINE B2 -48 168 1 1 875 21 57 0 0 chr12 38071992 38072027 -83185503 + AT_rich Low_complexity Low_complexity 1 35 0 1 875 23 86 0 0 chr12 38072148 38072206 -83185324 + AT_rich Low_complexity Low_complexity 1 58 0 1 875 266 232 81 46 chr12 38075186 38075290 -83182240 - MLT1C LTR MaLR -18 487 352 1 875 26 50 0 0 chr12 38075598 38075638 -83181892 + AT_rich Low_complexity Low_complexity 1 40 0 1 875 455 281 25 0 chr12 38077117 38077238 -83180292 - B1_Mur1 SINE Alu -15 134 11 1 875 261 281 137 23 chr12 38077343 38077474 -83180056 + B1F1 SINE Alu 3 148 -1 1 875 297 0 0 0 chr12 38077508 38077541 -83179989 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 875 325 312 64 12 chr12 38077982 38078154 -83179376 + L1MC3 LINE L1 7199 7379 -406 1 875 279 216 39 39 chr12 38078155 38078232 -83179298 - MTD LTR MaLR 0 419 343 1 875 355 196 29 0 chr12 38078378 38078480 -83179050 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 1 875 23 0 0 0 chr12 38078813 38078836 -83178694 + AT_rich Low_complexity Low_complexity 1 23 0 1 875 959 91 0 14 chr12 38079001 38079146 -83178384 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 1 875 615 268 44 97 chr12 38079203 38079430 -83178100 + B3 SINE B2 1 215 -1 1 875 2634 136 119 103 chr12 38080099 38080778 -83176752 - RMER6C LTR ERVK 0 690 1 1 875 579 66 0 0 chr12 38081791 38081867 -83175663 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 875 5141 44 3 8 chr12 38081941 38082583 -83174947 + L1Md_F3 LINE L1 5932 6570 -14 1 875 228 220 0 33 chr12 38085929 38085990 -83171540 + (TATG)n Simple_repeat Simple_repeat 3 61 0 1 875 4234 109 24 3 chr12 38086084 38086721 -83170809 - Lx2 LINE L1 0 6997 6348 1 875 1213 153 0 9 chr12 38086721 38086942 -83170588 + L1_Mur2 LINE L1 3530 3750 -2127 1 875 2378 81 67 0 chr12 38086943 38087288 -83170242 - MTB LTR MaLR -32 368 1 1 875 461 252 0 0 chr12 38087288 38087385 -83170145 + RSINE1 SINE B4 65 161 -4 1 875 306 73 0 0 chr12 38087903 38087944 -83169586 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 875 321 26 0 0 chr12 38087952 38087990 -83169540 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 875 588 276 8 0 chr12 38088007 38088141 -83169389 - B1_Mur2 SINE Alu -14 135 1 1 875 340 314 43 19 chr12 38088536 38088698 -83168832 - L1M5 LINE L1 -1040 5106 4941 1 875 3162 34 39 0 chr12 38088743 38089124 -83168406 + MTA_Mm LTR MaLR 1 396 0 1 875 2928 69 0 0 chr12 38089124 38089514 -83168016 + MTA_Mm-int LTR MaLR 1 390 -708 1 875 36221 47 1 17 chr12 38089524 38094815 -83162715 + L1Md_A LINE L1 380 5585 -298 1 875 8366 37 0 0 chr12 38094816 38095812 -83161718 + L1Md_A LINE L1 5587 6582 0 1 875 2109 92 10 7 chr12 38095813 38096108 -83161422 + MTA_Mm-int LTR MaLR 1538 1833 -130 1 875 43 35 0 0 chr12 38096108 38096165 -83161365 + AT_rich Low_complexity Low_complexity 1 57 0 1 875 4513 55 109 1 chr12 38096197 38096849 -83160681 + MTA_Mm-int LTR MaLR 377 1098 0 1 875 3300 38 2 10 chr12 38096849 38097248 -83160282 + MTA_Mm LTR MaLR 1 396 0 1 875 343 279 112 26 chr12 38097654 38097832 -83159698 - B3A SINE B2 -7 209 3 1 875 1367 133 0 0 chr12 38099294 38099504 -83158026 - Lx3A LINE L1 -314 6667 6458 1 875 1902 137 25 16 chr12 38099504 38099823 -83157707 + Lx3_Mus LINE L1 6686 7007 -2 1 875 27 62 0 0 chr12 38099824 38099872 -83157658 + AT_rich Low_complexity Low_complexity 1 48 0 1 875 325 204 247 75 chr12 38099928 38100114 -83157416 - Lx9 LINE L1 -7 7637 7420 1 875 484 255 62 7 chr12 38100166 38100312 -83157218 - Lx9 LINE L1 -434 7210 7057 1 875 413 225 11 0 chr12 38100310 38100399 -83157131 + Lx9 LINE L1 6954 7043 -601 1 875 195 42 0 0 chr12 38100634 38100658 -83156872 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 875 465 19 0 0 chr12 38100681 38100735 -83156795 + (GGA)n Simple_repeat Simple_repeat 3 56 0 1 875 1014 95 0 0 chr12 38100945 38101093 -83156437 + (TA)n Simple_repeat Simple_repeat 2 149 0 1 875 711 340 48 42 chr12 38101229 38101542 -83155988 + MTE2a LTR MaLR 65 379 0 1 875 459 0 0 0 chr12 38101717 38101768 -83155762 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 875 2064 225 52 16 chr12 38101816 38102406 -83155124 - Lx6 LINE L1 -1507 5953 5333 1 875 1338 274 53 0 chr12 38102409 38102785 -83154745 + Lx6 LINE L1 5970 6365 -1095 1 875 363 60 0 0 chr12 38102791 38102841 -83154689 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 875 2271 233 33 19 chr12 38102842 38103358 -83154172 + Lx6 LINE L1 6935 7457 -3 1 875 254 265 299 21 chr12 38103388 38103532 -83153998 - B3A SINE B2 -13 185 2 1 875 798 116 23 0 chr12 38104021 38104150 -83153380 - L1_Mur1 LINE L1 -3310 2576 2445 1 875 1398 256 145 91 chr12 38104155 38105033 -83152497 + RMER17B LTR ERVK 2 926 -32 1 875 5815 174 17 29 chr12 38105034 38106270 -83151260 - L1_Mur1 LINE L1 -3432 2454 1234 1 875 1159 258 73 3 chr12 38107188 38107488 -83150042 + Lx6 LINE L1 7140 7460 0 1 875 21 0 0 0 chr12 38108218 38108239 -83149291 + AT_rich Low_complexity Low_complexity 1 21 0 1 875 5728 158 9 14 chr12 38109700 38110703 -83146827 - Lx3B LINE L1 -2 6971 5974 1 875 3501 111 12 2 chr12 38110706 38111219 -83146311 - L1_Mur1 LINE L1 -126 5760 5243 1 875 5841 106 6 51 chr12 38111217 38112196 -83145334 + L1_Mur1 LINE L1 4299 5233 -653 1 875 357 109 0 0 chr12 38112943 38112998 -83144532 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 1 875 1453 272 46 10 chr12 38113005 38113395 -83144135 - Lx6 LINE L1 -168 7292 6889 1 875 2573 190 100 7 chr12 38114841 38115382 -83142148 + RMER20B LTR ERVK 37 627 0 1 875 182 122 73 0 chr12 38115920 38115961 -83141569 + CT-rich Low_complexity Low_complexity 5 48 0 1 875 312 48 0 0 chr12 38115968 38116010 -83141520 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 875 26 30 0 0 chr12 38116034 38116067 -83141463 + AT_rich Low_complexity Low_complexity 1 33 0 1 875 515 289 70 0 chr12 38116188 38116316 -83141214 - B3 SINE B2 -79 137 1 1 875 332 43 0 21 chr12 38116353 38116400 -83141130 + (TATG)n Simple_repeat Simple_repeat 4 49 0 1 875 956 158 0 7 chr12 38116400 38116553 -83140977 - B2_Mm2 SINE B2 -42 153 2 1 875 310 151 61 70 chr12 38116761 38116875 -83140655 + Lx9 LINE L1 7529 7641 -3 1 875 21 89 0 0 chr12 38118634 38118690 -83138840 + AT_rich Low_complexity Low_complexity 1 56 0 1 875 251 299 99 35 chr12 38121697 38121839 -83135691 - Charlie4z DNA MER1_type -3 164 14 1 875 22 70 0 0 chr12 38122061 38122104 -83135426 + AT_rich Low_complexity Low_complexity 1 43 0 1 875 295 345 14 14 chr12 38123386 38123527 -83134003 + GA-rich Low_complexity Low_complexity 3 143 0 1 875 418 312 28 90 chr12 38124155 38124366 -83133164 + B3A SINE B2 1 198 0 1 875 222 319 0 0 chr12 38124986 38125054 -83132476 - MIR SINE MIR -60 148 80 1 875 405 305 75 52 chr12 38126520 38126693 -83130837 - MER20 DNA MER1_type -39 180 4 1 875 351 0 0 0 chr12 38126861 38126900 -83130630 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 875 22 0 0 0 chr12 38126917 38126939 -83130591 + AT_rich Low_complexity Low_complexity 1 22 0 1 875 2466 88 9 0 chr12 38126939 38127270 -83130260 - Lx3_Mus LINE L1 -47 6962 6629 1 875 673 269 33 24 chr12 38127532 38127745 -83129785 - B3 SINE B2 -1 215 1 1 875 924 262 38 32 chr12 38128001 38128167 -83129363 - Lx9 LINE L1 -7 7637 7477 1 875 513 47 0 0 chr12 38128167 38128231 -83129299 + (TCTCCC)n Simple_repeat Simple_repeat 3 66 0 1 875 924 262 38 32 chr12 38128231 38128379 -83129151 - Lx9 LINE L1 -168 7476 7321 1 875 189 0 0 0 chr12 38129959 38129980 -83127550 + (TTAAA)n Simple_repeat Simple_repeat 5 25 0 1 875 22 35 0 0 chr12 38130039 38130068 -83127462 + AT_rich Low_complexity Low_complexity 1 29 0 1 875 22 80 0 0 chr12 38131716 38131766 -83125764 + AT_rich Low_complexity Low_complexity 1 50 0 1 875 21 71 0 0 chr12 38131818 38131860 -83125670 + AT_rich Low_complexity Low_complexity 1 42 0 1 875 248 81 0 0 chr12 38132378 38132415 -83125115 - B1_Mus2 SINE Alu -109 38 2 1 875 255 61 0 0 chr12 38133547 38133580 -83123950 + (A)n Simple_repeat Simple_repeat 1 33 0 1 875 411 199 264 10 chr12 38133911 38134037 -83123493 - Lx9 LINE L1 -2 7642 7485 1 875 489 115 0 0 chr12 38134037 38134115 -83123415 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 875 411 199 264 10 chr12 38134115 38134181 -83123349 - Lx9 LINE L1 -160 7484 7403 1 875 698 288 213 32 chr12 38134555 38134903 -83122627 - Lx6 LINE L1 -9 7451 7041 1 875 283 270 12 108 chr12 38136575 38136658 -83120872 - MER2 DNA MER2_type -6 339 265 1 875 503 312 21 42 chr12 38138476 38138620 -83118910 + B1F SINE Alu 7 147 -2 1 875 21 36 0 0 chr12 38138643 38138671 -83118859 + AT_rich Low_complexity Low_complexity 1 28 0 1 875 1215 78 11 11 chr12 38138730 38138912 -83118618 + L1_Mus3 LINE L1 6455 6636 -2 1 875 319 172 0 0 chr12 38138915 38138973 -83118557 + ORR1A2 LTR MaLR 257 314 -13 1 875 853 185 117 41 chr12 38138978 38139175 -83118355 - ORR1B1 LTR MaLR -182 212 1 1 875 2795 180 92 131 chr12 38139175 38139923 -83117607 - ORR1B1-int LTR MaLR 0 1509 791 1 875 535 304 7 7 chr12 38139927 38140073 -83117457 - MTD LTR MaLR -242 177 32 1 875 198 0 0 0 chr12 38140090 38140112 -83117418 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 1 875 22 56 0 0 chr12 38140258 38140294 -83117236 + AT_rich Low_complexity Low_complexity 1 36 0 1 875 1742 142 108 14 chr12 38140895 38141239 -83116291 - RMER6D LTR ERVK -189 531 156 1 876 3313 175 66 11 chr12 38141952 38142606 -83114924 - RMER6C LTR ERVK 0 690 1 1 876 1093 272 172 6 chr12 38142890 38143245 -83114285 - MTD LTR MaLR 0 419 6 1 876 2949 161 51 35 chr12 38143267 38143834 -83113696 - RMER4B LTR ERVK -9 576 1 1 876 747 0 0 0 chr12 38144995 38145078 -83112452 + (CAAAA)n Simple_repeat Simple_repeat 5 87 0 2 876 1546 160 56 96 chr12 38145088 38145496 -83112034 - RLTR9C LTR ERVK 0 393 2 2 876 663 13 0 0 chr12 38145496 38145572 -83111958 + (CAGAA)n Simple_repeat Simple_repeat 5 80 0 2 876 662 113 9 0 chr12 38145669 38145775 -83111755 + (TGGA)n Simple_repeat Simple_repeat 3 109 0 2 876 381 284 20 0 chr12 38145789 38145891 -83111639 - Lx7 LINE L1 -393 7303 7200 2 876 4880 243 34 13 chr12 38145964 38147063 -83110467 - Lx6 LINE L1 -176 7284 6163 2 876 378 0 0 0 chr12 38147063 38147105 -83110425 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 876 4880 252 29 31 chr12 38147105 38147161 -83110369 - Lx6 LINE L1 -1499 6197 6127 2 876 1807 81 12 4 chr12 38147161 38147409 -83110121 - L1_Mus1 LINE L1 -8 6559 6310 2 876 3661 268 22 63 chr12 38147409 38147613 -83109917 - Lx6 LINE L1 -1536 6160 5985 2 876 408 229 41 8 chr12 38147723 38147846 -83109684 - Lx7 LINE L1 0 7696 7570 2 876 492 248 49 7 chr12 38147850 38147992 -83109538 + Lx6 LINE L1 5792 5939 -1521 2 876 263 167 126 3 chr12 38148267 38148349 -83109181 - MLT1H1 LTR MaLR 0 579 497 2 876 4317 216 119 14 chr12 38148573 38150207 -83107323 - Lx4B LINE L1 -4 7054 5249 2 876 309 89 22 0 chr12 38150202 38150247 -83107283 + L1_Mur2 LINE L1 4162 4207 -1670 2 876 250 318 102 47 chr12 38151196 38151470 -83106060 - L1M5 LINE L1 -510 5730 5442 2 876 600 370 46 11 chr12 38151678 38151959 -83105571 + B4A SINE B4 2 292 0 2 876 269 195 36 24 chr12 38152596 38152680 -83104850 + T-rich Low_complexity Low_complexity 4 88 0 2 876 188 111 28 0 chr12 38154234 38154270 -83103260 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2 876 444 298 129 10 chr12 38154553 38154746 -83102784 - B3 SINE B2 0 216 1 2 876 552 42 0 0 chr12 38155773 38155844 -83101686 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 876 2980 97 33 0 chr12 38155970 38156395 -83101135 - L1_Mus4 LINE L1 -1 6635 6197 2 876 489 242 62 124 chr12 38156461 38156687 -83100843 - Lx9 LINE L1 -623 7021 6810 2 876 270 208 0 0 chr12 38156697 38156750 -83100780 + Lx9 LINE L1 6992 7044 -600 2 876 1250 252 3 13 chr12 38156750 38157064 -83100466 + Lx5 LINE L1 6727 7037 -13 2 876 1594 224 90 65 chr12 38157081 38157334 -83100196 + Lx9 LINE L1 7040 7271 -373 2 876 1137 128 0 0 chr12 38157334 38157514 -83100016 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 876 1594 224 90 65 chr12 38157514 38157818 -83099712 + Lx9 LINE L1 7272 7611 -33 2 876 210 37 0 0 chr12 38157832 38157859 -83099671 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 876 591 15 0 0 chr12 38157859 38157926 -83099604 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 876 29 28 0 0 chr12 38159614 38159650 -83097880 + AT_rich Low_complexity Low_complexity 1 36 0 2 876 441 0 0 0 chr12 38160997 38161046 -83096484 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 876 26 50 0 0 chr12 38161813 38161853 -83095677 + AT_rich Low_complexity Low_complexity 1 40 0 2 876 214 135 38 19 chr12 38163270 38163323 -83094207 + CT-rich Low_complexity Low_complexity 2 55 0 2 876 232 305 0 63 chr12 38163345 38163408 -83094122 - ID2 SINE ID -24 59 1 2 876 313 354 53 69 chr12 38164216 38164462 -83093068 + MTEb LTR MaLR 5 246 -133 2 876 21 57 0 0 chr12 38165031 38165066 -83092464 + AT_rich Low_complexity Low_complexity 1 35 0 2 876 282 398 84 15 chr12 38165346 38165609 -83091921 + L2 LINE L2 2119 2399 -1020 2 876 854 19 10 0 chr12 38165610 38165714 -83091816 + (TTCTC)n Simple_repeat Simple_repeat 1 105 0 2 876 230 218 48 19 chr12 38165721 38165824 -83091706 + CT-rich Low_complexity Low_complexity 1 106 0 2 876 753 87 5 85 chr12 38165839 38166027 -83091503 + CT-rich Low_complexity Low_complexity 1 173 0 2 876 402 246 67 17 chr12 38166027 38166126 -83091404 + polypyrimidine Low_complexity Low_complexity 22 127 0 2 876 513 47 0 0 chr12 38166126 38166190 -83091340 + (TCTCC)n Simple_repeat Simple_repeat 4 67 0 2 876 402 246 67 17 chr12 38166190 38166210 -83091320 + polypyrimidine Low_complexity Low_complexity 2 21 0 2 876 25 0 0 0 chr12 38166420 38166445 -83091085 + AT_rich Low_complexity Low_complexity 1 25 0 2 876 351 0 0 0 chr12 38166755 38166794 -83090736 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 876 183 159 0 0 chr12 38166802 38166822 -83090708 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 876 402 21 0 0 chr12 38166822 38166869 -83090661 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 876 183 159 0 0 chr12 38166869 38166892 -83090638 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 876 1019 95 0 70 chr12 38166933 38167091 -83090439 - B1_Mm SINE Alu 0 147 1 2 876 250 250 99 8 chr12 38168607 38168728 -83088802 + L1MB5 LINE L1 6032 6163 -11 2 876 25 0 0 0 chr12 38168789 38168814 -83088716 + AT_rich Low_complexity Low_complexity 1 25 0 2 876 220 186 0 0 chr12 38169202 38169245 -83088285 + (CTG)n Simple_repeat Simple_repeat 1 43 0 2 876 22 56 0 0 chr12 38170106 38170142 -83087388 + AT_rich Low_complexity Low_complexity 1 36 0 2 876 26 64 0 0 chr12 38173017 38173064 -83084466 + AT_rich Low_complexity Low_complexity 1 47 0 2 876 226 235 29 29 chr12 38174155 38174225 -83083305 - MER121 Unknown Unknown -128 284 215 2 876 260 348 14 22 chr12 38175742 38175880 -83081650 + B4A SINE B4 140 276 -16 2 876 201 167 24 0 chr12 38176445 38176487 -83081043 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 2 876 666 0 0 0 chr12 38177813 38177887 -83079643 + (TTCTC)n Simple_repeat Simple_repeat 1 74 0 2 876 1155 83 0 27 chr12 38177892 38178077 -83079453 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 876 278 152 0 17 chr12 38178077 38178137 -83079393 + CT-rich Low_complexity Low_complexity 2 60 0 2 876 1972 91 38 11 chr12 38178166 38178727 -83078803 - L1_Mus1 LINE L1 -647 5935 5654 2 876 4012 81 30 2 chr12 38178728 38179270 -83078260 + L1_Mus1 LINE L1 6009 6565 -2 2 876 399 21 0 0 chr12 38180104 38180152 -83077378 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 876 195 250 0 0 chr12 38180203 38180255 -83077275 + A-rich Low_complexity Low_complexity 2 53 0 2 876 248 208 0 0 chr12 38180339 38180387 -83077143 - Lx7 LINE L1 -440 7256 7209 2 876 2195 103 9 3 chr12 38180692 38181014 -83076516 - L1_Mus3 LINE L1 -10 6628 6305 2 876 21 36 0 0 chr12 38181090 38181118 -83076412 + AT_rich Low_complexity Low_complexity 1 28 0 2 876 397 168 227 0 chr12 38181120 38181239 -83076291 + Lx4B LINE L1 6907 7052 -6 2 876 762 157 184 0 chr12 38181550 38181734 -83075796 - Lx5 LINE L1 -146 6912 6648 2 876 3149 136 8 0 chr12 38181825 38182311 -83075219 - Lx3C LINE L1 -153 6823 6334 2 876 22 35 0 0 chr12 38182468 38182497 -83075033 + AT_rich Low_complexity Low_complexity 1 29 0 2 876 22 0 0 0 chr12 38182965 38182987 -83074543 + AT_rich Low_complexity Low_complexity 1 22 0 2 876 180 326 65 78 chr12 38183384 38183537 -83073993 + L4 LINE RTE 585 735 -1294 2 876 2359 232 78 25 chr12 38184018 38184650 -83072880 - Lx4B LINE L1 -3 7055 6391 2 876 883 182 7 0 chr12 38184658 38184806 -83072724 + Lx5 LINE L1 6198 6346 -704 2 876 1185 281 56 53 chr12 38184806 38185144 -83072386 - MTEa LTR MaLR -40 339 1 2 876 605 367 74 53 chr12 38186104 38186481 -83071049 - MLT1E2 LTR MaLR -211 416 32 2 876 22 35 0 0 chr12 38187419 38187448 -83070082 + AT_rich Low_complexity Low_complexity 1 29 0 2 876 251 174 0 0 chr12 38187561 38187607 -83069923 - L1MEf LINE L1 -4743 1457 1412 2 876 349 241 269 0 chr12 38187733 38187841 -83069689 - B1_Mur2 SINE Alu -8 141 5 2 876 477 92 0 0 chr12 38188037 38188113 -83069417 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 2 876 28 0 0 0 chr12 38188284 38188312 -83069218 + AT_rich Low_complexity Low_complexity 1 28 0 2 876 1013 304 86 59 chr12 38188978 38189454 -83068076 + MLT1D LTR MaLR 17 505 0 2 876 37 69 0 0 chr12 38189476 38189548 -83067982 + AT_rich Low_complexity Low_complexity 1 72 0 2 876 1770 269 33 25 chr12 38190374 38190697 -83066833 - Lx6 LINE L1 -20 7440 7113 2 876 540 0 0 0 chr12 38190697 38190757 -83066773 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 876 450 0 0 0 chr12 38190757 38190807 -83066723 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 876 1770 269 33 25 chr12 38190807 38190931 -83066599 - Lx6 LINE L1 -348 7112 6989 2 876 3983 85 22 7 chr12 38190967 38191549 -83065981 - L1_Mus3 LINE L1 0 6638 6048 2 876 180 0 0 0 chr12 38194573 38194593 -83062937 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2 876 769 194 19 12 chr12 38194593 38194755 -83062775 - B2_Mm2 SINE B2 -32 163 1 2 876 22 35 0 0 chr12 38196113 38196142 -83061388 + AT_rich Low_complexity Low_complexity 1 29 0 2 876 431 299 0 13 chr12 38196926 38197075 -83060455 + B1_Mur1 SINE Alu 2 148 -1 2 876 252 86 0 0 chr12 38197084 38197119 -83060411 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2 876 2750 291 38 68 chr12 38200912 38201976 -83055554 - RMER1C Other Other -2 1340 375 2 876 23 0 0 0 chr12 38202303 38202326 -83055204 + AT_rich Low_complexity Low_complexity 1 23 0 2 876 4400 184 39 22 chr12 38202351 38203318 -83054212 - MYSERV6-int LTR ERVK -115 8844 7861 2 876 23 0 0 0 chr12 38203435 38203458 -83054072 + AT_rich Low_complexity Low_complexity 1 23 0 2 876 1201 327 34 38 chr12 38203467 38204093 -83053437 - MurERV4-int LTR ERVK -95 5165 4543 2 876 203 133 0 0 chr12 38204211 38204241 -83053289 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 2 876 1199 132 19 14 chr12 38204241 38204448 -83053082 - Lx2 LINE L1 -15 6982 6775 2 876 311 115 0 0 chr12 38204448 38204500 -83053030 - Lx2 LINE L1 -358 6642 6591 2 876 1445 128 72 0 chr12 38204728 38204977 -83052553 - Lx3B LINE L1 -1 6972 6706 2 876 259 315 13 39 chr12 38205512 38205667 -83051863 - RLTR15 LTR ERVK -159 200 50 2 876 484 257 0 68 chr12 38205718 38205835 -83051695 - PB1D10 SINE Alu -2 115 7 2 876 31 68 0 0 chr12 38208405 38208464 -83049066 + AT_rich Low_complexity Low_complexity 1 59 0 2 876 568 162 51 0 chr12 38209500 38209617 -83047913 - L1_Mur3 LINE L1 -3814 2066 1944 2 876 384 250 0 0 chr12 38209873 38209953 -83047577 + L1_Mur3 LINE L1 782 861 -6867 2 876 7300 246 129 22 chr12 38209951 38213316 -83044214 + L1_Mur3 LINE L1 1498 5363 -523 2 876 415 245 0 11 chr12 38213319 38213414 -83044116 + Lx6 LINE L1 6367 6460 -1000 3 876 2184 270 71 24 chr12 38213415 38213844 -83043686 + Lx7 LINE L1 6632 7058 -638 3 876 495 0 0 0 chr12 38213844 38213899 -83043631 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 876 2184 270 71 24 chr12 38213899 38214172 -83043358 + Lx7 LINE L1 7059 7366 -330 3 876 24 0 0 0 chr12 38214232 38214256 -83043274 + AT_rich Low_complexity Low_complexity 1 24 0 3 876 757 248 88 55 chr12 38214262 38214375 -83043155 + Lx7 LINE L1 7358 7487 -209 3 876 598 25 12 12 chr12 38214375 38214456 -83043074 + (TTTTG)n Simple_repeat Simple_repeat 5 85 0 3 876 757 248 88 55 chr12 38214456 38214670 -83042860 + Lx7 LINE L1 7488 7695 -1 3 876 21 36 0 0 chr12 38215001 38215029 -83042501 + AT_rich Low_complexity Low_complexity 1 28 0 3 876 217 306 0 110 chr12 38216035 38216171 -83041359 - B1_Mus1 SINE Alu 0 148 28 3 876 352 28 0 89 chr12 38216297 38216376 -83041154 + (TTTTG)n Simple_repeat Simple_repeat 3 74 0 3 876 1047 204 47 103 chr12 38216378 38216678 -83040852 - RMER6B LTR ERVK -2 459 177 3 876 746 215 115 41 chr12 38216680 38216898 -83040632 + Lx4B LINE L1 6813 7046 -12 3 876 435 63 0 0 chr12 38216898 38216961 -83040569 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 3 876 1125 141 31 20 chr12 38216966 38217161 -83040369 - RMER6B LTR ERVK -264 197 1 3 876 303 28 0 0 chr12 38217431 38217467 -83040063 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 876 197 65 0 31 chr12 38219865 38219897 -83037633 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 876 441 291 6 92 chr12 38219901 38220064 -83037466 - B1_Mur1 SINE Alu 0 149 1 3 876 293 344 50 64 chr12 38219946 38220086 -83037444 - B4 SINE B4 -88 204 67 3 876 210 37 0 0 chr12 38220118 38220145 -83037385 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 876 333 118 0 0 chr12 38220166 38220217 -83037313 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 3 876 238 272 10 10 chr12 38221879 38221983 -83035547 - Lx9 LINE L1 -1 7643 7540 3 876 249 363 98 19 chr12 38222272 38222536 -83034994 + L2 LINE L2 633 917 -2502 3 876 376 274 30 56 chr12 38222662 38222859 -83034671 - L1MC LINE L1 -789 5544 5353 3 876 2793 113 24 2 chr12 38222853 38222874 -83034656 - L1_Mus3 LINE L1 -6 6632 6612 3 876 1501 40 0 48 chr12 38222874 38223084 -83034446 - L1Md_F2 LINE L1 0 6582 6383 3 876 2793 113 24 2 chr12 38223084 38223478 -83034052 - L1_Mus3 LINE L1 -27 6611 6209 3 876 2162 96 3 0 chr12 38223477 38223779 -83033751 + L1_Mus3 LINE L1 5912 6214 -352 3 876 369 353 113 4 chr12 38224281 38224520 -83033010 + L2 LINE L2 1456 1720 -1699 3 876 463 367 123 15 chr12 38225071 38225550 -83031980 + L2 LINE L2 2552 3082 -337 3 876 425 315 136 42 chr12 38225598 38225863 -83031667 - MLT1E1 LTR MaLR 0 654 365 3 876 2959 109 46 13 chr12 38225899 38226374 -83031156 - Lx LINE L1 -6 6648 6158 3 876 437 308 65 54 chr12 38226866 38227144 -83030386 - LTR87 LTR ERVL? -20 604 324 3 876 1189 62 0 0 chr12 38227334 38227479 -83030051 + B1_Mus1 SINE Alu 1 145 -3 3 876 261 57 0 0 chr12 38227479 38227514 -83030016 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 876 189 0 0 0 chr12 38227524 38227545 -83029985 + (A)n Simple_repeat Simple_repeat 1 21 0 3 876 3364 77 29 23 chr12 38227629 38228108 -83029422 - RLTR45 LTR ERVK 0 482 1 3 876 210 244 8 16 chr12 38228879 38229000 -83028530 + GA-rich Low_complexity Low_complexity 1 120 0 3 876 22 56 0 0 chr12 38230483 38230519 -83027011 + AT_rich Low_complexity Low_complexity 1 36 0 3 876 8188 149 44 1 chr12 38231228 38233007 -83024523 - Lx2 LINE L1 -1 6996 5142 3 876 22 35 0 0 chr12 38233196 38233225 -83024305 + AT_rich Low_complexity Low_complexity 1 29 0 3 876 454 303 27 28 chr12 38233298 38233453 -83024077 + B4A SINE B4 1 154 -70 3 876 465 66 0 0 chr12 38233497 38233558 -83023972 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 876 561 150 0 0 chr12 38234878 38234978 -83022552 + (A)n Simple_repeat Simple_repeat 1 100 0 3 876 249 277 41 32 chr12 38235144 38235161 -83022369 + CYRA11_Mm Unknown Y-chromosome 155 172 -445 3 876 724 196 0 0 chr12 38235161 38235299 -83022231 - URR1B DNA MER1_type 0 225 88 3 876 1127 58 0 0 chr12 38235380 38235518 -83022012 + B1_Mm SINE Alu 2 139 -8 3 876 366 139 0 0 chr12 38235527 38235599 -83021931 + (A)n Simple_repeat Simple_repeat 1 72 0 3 876 348 24 0 0 chr12 38235710 38235751 -83021779 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 876 261 0 0 0 chr12 38235752 38235781 -83021749 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 876 34557 81 16 4 chr12 38235923 38241987 -83015543 - L1Md_F2 LINE L1 -4 6578 219 3 876 5766 80 0 5 chr12 38242190 38242960 -83014570 - L1_Mus3 LINE L1 -222 6416 5651 3 876 834 149 45 28 chr12 38242960 38243139 -83014391 + L1_Mus3 LINE L1 6450 6631 -7 3 876 1023 204 4 70 chr12 38243712 38243954 -83013576 - URR1A DNA MER1_type 0 226 1 3 876 354 269 233 6 chr12 38244873 38245049 -83012481 + ID_B1 SINE B4 1 216 -8 3 876 414 0 0 0 chr12 38245289 38245335 -83012195 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 876 874 111 0 19 chr12 38245790 38245946 -83011584 - L1Md_F2 LINE L1 -2 6580 6428 3 876 2175 89 0 10 chr12 38245947 38246243 -83011287 + L1Md_F2 LINE L1 6180 6472 -110 3 876 227 0 68 23 chr12 38246314 38246358 -83011172 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 3 876 306 125 0 0 chr12 38247567 38247615 -83009915 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 876 818 114 15 0 chr12 38248191 38248323 -83009207 + (TTCC)n Simple_repeat Simple_repeat 2 135 0 3 876 5196 222 48 58 chr12 38248708 38250046 -83007484 - Lx9 LINE L1 -2 7642 6319 3 876 207 0 0 0 chr12 38250193 38250216 -83007314 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 876 2004 147 9 3 chr12 38250868 38251188 -83006342 - Lx3B LINE L1 -4 6969 6648 3 876 246 62 0 0 chr12 38251812 38251844 -83005686 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 876 6769 89 35 9 chr12 38251870 38252825 -83004705 - RLTR13C1 LTR ERVK -4 979 1 3 876 363 316 112 19 chr12 38253526 38253687 -83003843 + Cheshire DNA MER1_type 117 292 -2128 3 876 228 35 0 0 chr12 38254479 38254508 -83003022 + (TTG)n Simple_repeat Simple_repeat 1 29 0 3 876 4132 140 19 26 chr12 38254546 38255468 -83002062 - Lx2B LINE L1 -753 6247 5326 3 876 841 120 19 12 chr12 38255468 38255628 -83001902 + L1_Mus2 LINE L1 6406 6566 0 3 876 3581 183 7 51 chr12 38255628 38255814 -83001716 - Lx2B LINE L1 -561 5325 5170 3 876 3971 139 76 17 chr12 38255815 38256516 -83001014 + Lx2B LINE L1 6246 6987 -13 3 876 427 380 9 36 chr12 38256969 38257190 -83000340 - B4A SINE B4 -73 219 5 3 876 222 128 0 0 chr12 38257282 38257321 -83000209 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 3 876 31 26 0 0 chr12 38257599 38257637 -82999893 + AT_rich Low_complexity Low_complexity 1 38 0 3 876 32600 78 2 16 chr12 38257658 38262775 -82994755 + L1Md_F2 LINE L1 546 5586 -297 3 876 8052 51 2 4 chr12 38262775 38263773 -82993757 + L1Md_F2 LINE L1 5587 6582 0 3 876 358 216 219 17 chr12 38264103 38264275 -82993255 - L1MA7 LINE L1 -344 5947 5678 3 876 25 51 0 0 chr12 38265138 38265177 -82992353 + AT_rich Low_complexity Low_complexity 1 39 0 3 876 468 262 26 61 chr12 38265222 38265336 -82992194 + PB1D9 SINE Alu 10 119 -1 3 876 260 261 99 28 chr12 38266057 38266128 -82991402 - B1_Mur4 SINE Alu -42 108 33 3 876 766 292 109 59 chr12 38266206 38266581 -82990949 - MER76 LTR ERVL -297 394 1 3 876 189 0 0 0 chr12 38267203 38267224 -82990306 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 876 324 0 0 0 chr12 38267224 38267259 -82990271 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 876 387 105 0 0 chr12 38267417 38267474 -82990056 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 876 6970 76 8 7 chr12 38269564 38270487 -82987043 - L1_Mus1 LINE L1 -5 6562 5639 3 109 20770 119 132 11 chr12 38271137 38276657 -82980873 - L1_Mus3 LINE L1 0 6638 396 3 877 23 54 0 0 chr12 38277283 38277320 -82980210 + AT_rich Low_complexity Low_complexity 1 37 0 3 877 242 297 31 0 chr12 38278698 38278762 -82978768 - LTR48B LTR ERV1 -125 519 454 3 877 340 275 32 21 chr12 38279442 38279535 -82977995 - PB1D10 SINE Alu -1 116 23 3 877 22 56 0 0 chr12 38279771 38279807 -82977723 + AT_rich Low_complexity Low_complexity 1 36 0 3 877 543 314 97 7 chr12 38281496 38281677 -82975853 - B3A SINE B2 -32 184 1 3 877 288 297 0 0 chr12 38282211 38282285 -82975245 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 3 877 27 49 0 0 chr12 38282596 38282637 -82974893 + AT_rich Low_complexity Low_complexity 1 41 0 3 877 424 366 61 50 chr12 38282774 38283053 -82974477 - B4A SINE B4 -10 282 1 3 877 303 352 0 22 chr12 38283979 38284069 -82973461 + B3A SINE B2 3 90 -108 3 877 315 333 100 43 chr12 38284270 38284480 -82973050 - HAL1-3A_ME LINE L1 -663 2195 1974 3 877 29 60 0 0 chr12 38285338 38285388 -82972142 + AT_rich Low_complexity Low_complexity 1 50 0 3 877 27052 135 43 5 chr12 38285461 38291445 -82966085 - L1_Mus2 LINE L1 0 6566 342 3 877 340 255 0 39 chr12 38291444 38291546 -82965984 - L1VL2 LINE L1 -6142 193 96 3 877 1066 102 0 0 chr12 38291568 38291715 -82965815 - B1_Mus1 SINE Alu 0 148 2 3 877 188 35 35 0 chr12 38291750 38291779 -82965751 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 3 877 226 351 71 66 chr12 38291892 38292075 -82965455 + RMER30 DNA MER1_type 19 202 0 3 877 660 13 0 0 chr12 38293538 38293615 -82963915 + (TTC)n Simple_repeat Simple_repeat 3 79 0 3 877 2425 102 12 3 chr12 38293668 38294013 -82963517 - Lx LINE L1 -3 6651 6304 3 877 1292 117 188 0 chr12 38294013 38294236 -82963294 + L1_Mm LINE L1 5469 5733 -150 3 877 342 0 0 0 chr12 38295769 38295807 -82961723 + (T)n Simple_repeat Simple_repeat 1 38 0 3 877 546 275 17 17 chr12 38297663 38297837 -82959693 - Lx6 LINE L1 -9 7451 7278 3 877 973 287 99 19 chr12 38297840 38298128 -82959402 + Lx6 LINE L1 6935 7248 -212 3 877 2041 120 35 3 chr12 38298128 38298445 -82959085 - ORR1A2 LTR MaLR 0 327 1 3 877 973 287 99 19 chr12 38298445 38298479 -82959051 + Lx6 LINE L1 7249 7282 -178 3 877 27 73 0 0 chr12 38299752 38299807 -82957723 + AT_rich Low_complexity Low_complexity 1 55 0 3 877 1914 51 0 0 chr12 38300274 38300510 -82957020 + L1Md_T LINE L1 6347 6582 0 3 877 180 0 0 0 chr12 38301732 38301752 -82955778 + (T)n Simple_repeat Simple_repeat 1 20 0 3 877 5774 52 0 0 chr12 38301764 38302474 -82955056 - L1Md_F2 LINE L1 -12 6570 5861 4 877 3389 48 0 2 chr12 38302479 38302895 -82954635 + L1Md_F2 LINE L1 6156 6570 -12 4 877 21 36 0 0 chr12 38302951 38302979 -82954551 + AT_rich Low_complexity Low_complexity 1 28 0 4 877 244 77 77 0 chr12 38303099 38303164 -82954366 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 877 722 271 53 37 chr12 38303167 38303355 -82954175 - B3 SINE B2 -2 214 24 4 877 2433 152 26 12 chr12 38303727 38304145 -82953385 + RMER4B LTR ERVK 162 585 0 4 877 387 0 0 0 chr12 38304248 38304291 -82953239 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 4 877 1263 119 14 14 chr12 38308786 38308999 -82948531 - Lx2 LINE L1 -4 6993 6781 4 877 1277 253 102 18 chr12 38310719 38311102 -82946428 - MTD LTR MaLR 0 419 5 4 877 372 43 0 0 chr12 38311144 38311190 -82946340 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 4 877 2828 260 65 6 chr12 38311875 38312660 -82944870 + Lx7 LINE L1 6609 7439 -257 4 877 28 0 0 0 chr12 38312864 38312892 -82944638 + AT_rich Low_complexity Low_complexity 1 28 0 4 877 225 196 36 0 chr12 38312892 38312948 -82944582 + Charlie14a DNA MER1_type 873 930 -234 4 877 21 0 0 0 chr12 38313108 38313129 -82944401 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 337 222 0 0 chr12 38313203 38313266 -82944264 - tRNA-Ala-GCA tRNA tRNA -11 64 2 4 877 529 122 0 0 chr12 38313600 38313674 -82943856 - Lx3C LINE L1 -396 6580 6507 4 877 2317 144 28 3 chr12 38313674 38314063 -82943467 + Lx3C LINE L1 6577 6975 -1 4 877 946 88 41 0 chr12 38314067 38314238 -82943292 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 4 877 340 375 18 44 chr12 38314494 38314767 -82942763 + BLACKJACK DNA AcHobo 147 412 -2532 4 877 339 319 83 83 chr12 38314881 38315219 -82942311 + BLACKJACK DNA AcHobo 808 1145 -1799 4 877 296 242 194 0 chr12 38315332 38315456 -82942074 + BLACKJACK DNA AcHobo 1318 1465 -1479 4 877 4408 187 58 7 chr12 38315456 38316307 -82941223 + Lx2A1 LINE L1 6115 7008 0 4 877 358 365 97 3 chr12 38316525 38316833 -82940697 + BLACKJACK DNA AcHobo 1759 2095 -849 4 877 665 344 55 16 chr12 38318295 38318552 -82938978 + B4A SINE B4 5 271 -21 4 877 297 0 0 0 chr12 38318608 38318641 -82938889 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 877 220 319 0 0 chr12 38319900 38319969 -82937561 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 877 461 94 0 12 chr12 38319985 38320071 -82937459 + (CAGAGA)n Simple_repeat Simple_repeat 6 90 0 4 877 24 32 0 0 chr12 38321207 38321238 -82936292 + AT_rich Low_complexity Low_complexity 1 31 0 4 877 409 318 6 33 chr12 38323717 38323899 -82933631 + CT-rich Low_complexity Low_complexity 4 180 0 4 877 329 318 61 43 chr12 38324419 38324877 -82932653 - L1MB2 LINE L1 -35 6136 5669 4 877 566 134 23 8 chr12 38325122 38325250 -82932280 + (TA)n Simple_repeat Simple_repeat 2 131 0 4 877 260 318 0 96 chr12 38325724 38325818 -82931712 + RSINE1 SINE B4 71 155 -10 4 877 24 0 0 0 chr12 38326502 38326526 -82931004 + AT_rich Low_complexity Low_complexity 1 24 0 4 877 402 311 114 0 chr12 38326812 38326944 -82930586 + B1F SINE Alu 1 147 -2 4 877 423 0 0 0 chr12 38326961 38327008 -82930522 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 877 2350 244 46 78 chr12 38327179 38327491 -82930039 - Lx7 LINE L1 -2 7694 7390 4 877 633 69 0 0 chr12 38327491 38327578 -82929952 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 877 2350 244 46 78 chr12 38327578 38328096 -82929434 - Lx7 LINE L1 -307 7389 6891 4 877 1453 271 32 8 chr12 38328096 38328564 -82928966 - Lx7 LINE L1 -1473 6223 5745 4 877 923 219 96 7 chr12 38328568 38328849 -82928681 - L1_Mur3 LINE L1 -4057 1823 1518 4 877 296 188 14 0 chr12 38329154 38329223 -82928307 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 877 29 28 0 0 chr12 38329258 38329294 -82928236 + AT_rich Low_complexity Low_complexity 1 36 0 4 877 236 100 0 24 chr12 38329305 38329346 -82928184 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 877 381 229 27 20 chr12 38329351 38329487 -82928043 - L1MA6 LINE L1 -44 6247 6110 4 877 29962 32 7 6 chr12 38329504 38334762 -82922768 + L1Md_A LINE L1 420 5653 -230 4 877 23 68 0 0 chr12 38336517 38336561 -82920969 + AT_rich Low_complexity Low_complexity 1 44 0 4 877 30 59 0 0 chr12 38336649 38336700 -82920830 + AT_rich Low_complexity Low_complexity 1 51 0 4 877 886 83 8 0 chr12 38336795 38336928 -82920602 + L1_Mus2 LINE L1 6433 6566 0 4 877 2733 105 4 42 chr12 38336935 38337391 -82920139 + MusHAL1 LINE L1 2270 2708 -4 4 877 1163 207 61 32 chr12 38337418 38337697 -82919833 - Lx5 LINE L1 -77 6973 6687 4 877 425 103 0 0 chr12 38337694 38337752 -82919778 + Lx5 LINE L1 6420 6477 -573 4 877 25 0 0 0 chr12 38338035 38338060 -82919470 + AT_rich Low_complexity Low_complexity 1 25 0 4 877 255 199 24 0 chr12 38338636 38338699 -82918831 + B1_Mur3 SINE Alu 77 145 -2 4 877 21 57 0 0 chr12 38338899 38338934 -82918596 + AT_rich Low_complexity Low_complexity 1 35 0 4 877 1846 31 0 26 chr12 38339247 38339480 -82918050 - L1Md_F3 LINE L1 -14 6570 6344 4 877 490 314 125 27 chr12 38339538 38339875 -82917655 - ORR1D2 LTR MaLR 0 370 1 4 877 1841 175 0 9 chr12 38340475 38340793 -82916737 - ORR1A4 LTR MaLR -14 315 1 4 877 384 374 22 88 chr12 38341241 38341649 -82915881 + Lx8 LINE L1 6961 7341 -132 4 877 1299 278 50 22 chr12 38341791 38342367 -82915163 + Lx5 LINE L1 6460 6891 -167 4 877 190 0 67 0 chr12 38343176 38343206 -82914324 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 877 1152 75 0 0 chr12 38343211 38343357 -82914173 - B1_Mus1 SINE Alu 0 148 3 4 877 5512 67 52 3 chr12 38343573 38344306 -82913224 + L1_Mus1 LINE L1 5799 6567 0 4 877 1346 292 35 3 chr12 38344374 38344741 -82912789 - MTE2b LTR MaLR 0 379 1 4 877 472 318 304 13 chr12 38345707 38346091 -82911439 + RMER5 LTR ERV1 40 534 0 4 877 2189 171 64 5 chr12 38346815 38346964 -82910566 - RMER6B LTR ERVK 0 461 308 4 877 450 0 0 0 chr12 38346964 38347014 -82910516 + (CAA)n Simple_repeat Simple_repeat 2 51 0 4 877 2189 171 64 5 chr12 38347014 38347299 -82910231 - RMER6B LTR ERVK -154 307 1 4 877 512 303 113 36 chr12 38347671 38347866 -82909664 + B3 SINE B2 6 215 -1 4 877 362 289 99 34 chr12 38348880 38349353 -82908177 + L1_Rod LINE L1 2890 3393 -2454 4 877 377 291 2 41 chr12 38349325 38349464 -82908066 + L1_Mm LINE L1 4461 4588 -1289 4 877 414 342 19 6 chr12 38349810 38349972 -82907558 - Lx7 LINE L1 -516 7180 7017 4 877 1763 210 72 13 chr12 38349976 38350362 -82907168 - MTC LTR MaLR -12 409 1 4 877 816 321 8 4 chr12 38350372 38350622 -82906908 - Lx7 LINE L1 -679 7017 6767 4 877 941 315 46 18 chr12 38350619 38351053 -82906477 + Lx7 LINE L1 5791 6236 -1460 4 877 258 283 71 21 chr12 38351056 38351197 -82906333 + L1M2 LINE L1 4605 4752 -1391 4 877 4009 149 35 30 chr12 38351200 38351894 -82905636 + Lx LINE L1 5933 6629 -25 4 877 27 0 0 0 chr12 38351898 38351925 -82905605 + AT_rich Low_complexity Low_complexity 1 27 0 4 877 245 128 0 21 chr12 38351925 38351973 -82905557 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 4 877 257 286 132 16 chr12 38352000 38352121 -82905409 + L1_Mm LINE L1 4768 4902 -975 4 877 1236 212 47 23 chr12 38352125 38352425 -82905105 + Lx7 LINE L1 6045 6351 -1345 4 877 28 48 0 0 chr12 38352445 38352487 -82905043 + AT_rich Low_complexity Low_complexity 1 42 0 4 877 216 0 0 0 chr12 38353062 38353086 -82904444 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 877 4096 231 23 6 chr12 38353090 38353933 -82903597 + Lx7 LINE L1 6336 7195 -501 4 877 2580 45 39 9 chr12 38353933 38354269 -82903261 + ORR1A1 LTR MaLR 1 346 0 4 877 4096 231 23 6 chr12 38354269 38354337 -82903193 + Lx7 LINE L1 7196 7263 -433 4 877 22 70 0 0 chr12 38354394 38354437 -82903093 + AT_rich Low_complexity Low_complexity 1 43 0 4 877 399 106 0 0 chr12 38354476 38354542 -82902988 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 877 207 232 0 18 chr12 38354934 38354991 -82902539 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 877 295 333 0 0 chr12 38355175 38355265 -82902265 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 877 3340 35 5 0 chr12 38355841 38356235 -82901295 - MTA_Mm LTR MaLR 0 396 1 4 877 7094 80 75 5 chr12 38356235 38357261 -82900269 - MTA_Mm-int LTR MaLR 0 1098 1 4 877 3059 35 62 0 chr12 38357261 38357634 -82899896 - MTA_Mm LTR MaLR 0 396 1 4 877 803 116 16 0 chr12 38358374 38358503 -82899027 - Lx2 LINE L1 -1 6996 6866 4 877 2744 91 2 54 chr12 38358509 38358938 -82898592 - L1Md_F2 LINE L1 0 6582 6176 4 877 717 307 9 0 chr12 38359084 38359296 -82898234 - B3 SINE B2 -2 214 1 4 877 574 272 51 92 chr12 38360264 38360556 -82896974 - ORR1E LTR MaLR -34 325 46 4 877 656 273 156 11 chr12 38360911 38361198 -82896332 - MTD LTR MaLR 0 419 26 4 877 255 280 2 18 chr12 38361251 38361313 -82896217 + B1F2 SINE Alu 6 67 -82 4 877 729 73 0 0 chr12 38361925 38362034 -82895496 + (TC)n Simple_repeat Simple_repeat 2 110 0 4 877 183 42 0 0 chr12 38362034 38362058 -82895472 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 877 974 227 32 40 chr12 38362058 38362329 -82895201 + ORR1D1 LTR MaLR 65 374 0 4 877 2022 164 17 14 chr12 38362838 38363221 -82894309 + ORR1A2 LTR MaLR 5 393 -1 4 877 1014 165 5 49 chr12 38363320 38363391 -82894139 - MTC LTR MaLR -149 272 208 4 877 5610 66 17 8 chr12 38363391 38364137 -82893393 - L1Md_F2 LINE L1 -1 6581 5829 4 877 1014 165 5 49 chr12 38364137 38364250 -82893280 - MTC LTR MaLR -214 207 96 4 877 212 367 107 18 chr12 38364332 38364612 -82892918 + L2 LINE L2 1145 1449 -1970 4 877 436 360 45 19 chr12 38364974 38365240 -82892290 + L2 LINE L2 1904 2176 -1243 4 877 244 295 10 78 chr12 38365279 38365382 -82892148 + L2a LINE L2 3281 3376 -50 4 877 314 307 145 13 chr12 38365818 38365970 -82891560 - HAL1-3A_ME LINE L1 -422 2436 2265 4 877 218 242 0 21 chr12 38367285 38367378 -82890152 + (CATA)n Simple_repeat Simple_repeat 4 94 0 4 877 22 35 0 0 chr12 38368510 38368539 -82888991 + AT_rich Low_complexity Low_complexity 1 29 0 4 877 234 0 0 0 chr12 38368778 38368804 -82888726 + (A)n Simple_repeat Simple_repeat 1 26 0 4 877 949 258 170 17 chr12 38369554 38369913 -82887617 + MTD LTR MaLR 5 418 -1 4 877 2927 76 8 5 chr12 38370089 38370488 -82887042 - MTB LTR MaLR 0 400 1 4 877 395 84 0 0 chr12 38370679 38370729 -82886801 + L1_Mm LINE L1 5537 5589 -297 4 877 8145 30 4 8 chr12 38370729 38371717 -82885813 + L1Md_F3 LINE L1 5587 6570 -14 5 877 274 261 4 0 chr12 38373966 38374044 -82883486 - L2b LINE L2 -312 3063 2985 5 877 261 303 70 52 chr12 38374044 38374159 -82883371 - MLT1A LTR MaLR -257 117 1 5 877 275 376 132 24 chr12 38374198 38374697 -82882833 - L2 LINE L2 -1341 2078 1526 5 877 192 40 0 0 chr12 38374706 38374731 -82882799 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 5 877 520 112 10 20 chr12 38374796 38374896 -82882634 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 5 877 258 160 0 0 chr12 38374901 38374951 -82882579 + (TATG)n Simple_repeat Simple_repeat 1 50 0 5 877 472 326 109 0 chr12 38374951 38375098 -82882432 - RSINE1 SINE B4 0 165 3 5 877 293 250 131 49 chr12 38375517 38375639 -82881891 - RCHARR1 DNA MER1_type -12 962 831 5 877 624 318 54 31 chr12 38375793 38376053 -82881477 - Lx8 LINE L1 -460 7013 6748 5 877 1029 226 173 8 chr12 38376067 38376419 -82881111 + Lx9 LINE L1 7235 7644 0 5 877 677 319 118 0 chr12 38376458 38376781 -82880749 - Lx8 LINE L1 -762 6711 6351 5 877 969 240 55 116 chr12 38376795 38376888 -82880642 - RCHARR1 DNA MER1_type -139 835 747 5 877 1085 88 0 0 chr12 38376888 38377035 -82880495 + B1_Mus1 SINE Alu 2 148 0 5 877 969 240 55 116 chr12 38377035 38377150 -82880380 - RCHARR1 DNA MER1_type -228 746 666 5 877 947 116 14 7 chr12 38377150 38377297 -82880233 - B1_Mus1 SINE Alu 0 148 1 5 877 969 240 55 116 chr12 38377297 38377563 -82879967 - RCHARR1 DNA MER1_type -309 665 389 5 877 1908 218 44 0 chr12 38377626 38377989 -82879541 - MTC LTR MaLR -8 413 35 5 877 1724 86 34 5 chr12 38377989 38378239 -82879291 - L1_Mus3 LINE L1 -814 5824 5592 5 877 5638 91 19 0 chr12 38378239 38379022 -82878508 + L1_Mus3 LINE L1 5841 6638 0 5 877 235 186 0 0 chr12 38379044 38379087 -82878443 - MTC LTR MaLR -378 43 1 5 877 204 414 13 52 chr12 38379614 38379767 -82877763 + MER5B DNA MER1_type 29 175 -3 5 877 670 315 139 6 chr12 38380017 38380362 -82877168 - Lx8 LINE L1 -233 7240 6850 5 877 1075 213 27 14 chr12 38380382 38380601 -82876929 - RLTR25A LTR ERVK -881 222 1 5 877 430 231 28 9 chr12 38380601 38380703 -82876827 + MTEb LTR MaLR 276 379 0 5 877 1884 235 12 24 chr12 38380953 38381363 -82876167 - MTD LTR MaLR -12 407 3 5 877 5655 228 38 40 chr12 38381427 38382841 -82874689 + Lx5 LINE L1 5629 7039 -11 5 877 268 125 0 0 chr12 38382900 38382940 -82874590 - RLTR12B LTR ERVK -329 199 160 5 877 24 53 0 0 chr12 38383023 38383061 -82874469 + AT_rich Low_complexity Low_complexity 1 38 0 5 877 367 292 96 40 chr12 38383545 38383670 -82873860 + ID_B1 SINE B4 84 215 -9 5 877 486 0 0 0 chr12 38383707 38383761 -82873769 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 877 198 357 78 36 chr12 38384141 38384333 -82873197 - MIRb SINE MIR -8 260 61 5 877 23 33 0 0 chr12 38384897 38384927 -82872603 + AT_rich Low_complexity Low_complexity 1 30 0 5 877 1802 112 7 18 chr12 38385630 38385885 -82871645 - L1_Mus3 LINE L1 -1 6637 6384 5 877 3334 90 101 30 chr12 38385885 38386412 -82871118 - LTRIS2 LTR ERV1 0 564 1 5 877 1802 112 7 18 chr12 38386412 38386438 -82871092 - L1_Mus3 LINE L1 -255 6383 6359 5 877 5746 105 30 27 chr12 38386438 38387336 -82870194 + RLTR13D6 LTR ERVK 2 902 0 5 877 26772 137 14 11 chr12 38387338 38392994 -82864536 - L1_Mus3 LINE L1 -275 6363 693 5 877 1195 54 0 0 chr12 38393346 38393493 -82864037 + B1_Mus2 SINE Alu 1 147 0 5 877 30 45 0 0 chr12 38393624 38393668 -82863862 + AT_rich Low_complexity Low_complexity 1 44 0 5 877 639 93 68 48 chr12 38393710 38393856 -82863674 + RMER17B LTR ERVK 313 461 -497 5 877 208 226 32 0 chr12 38394149 38394211 -82863319 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 5 877 321 210 5 193 chr12 38394359 38394493 -82863037 - Lx7 LINE L1 -70 7626 7522 5 877 219 69 0 0 chr12 38394493 38394522 -82863008 + (ATATG)n Simple_repeat Simple_repeat 2 30 0 5 877 321 210 5 193 chr12 38394522 38394594 -82862936 - Lx7 LINE L1 -175 7521 7459 5 877 472 231 8 0 chr12 38394592 38394713 -82862817 - L1_Mur3 LINE L1 -3407 2473 2352 5 877 40389 18 1 6 chr12 38394710 38400914 -82856616 - L1Md_A LINE L1 0 6582 412 5 877 3131 204 143 60 chr12 38400911 38401964 -82855566 - L1_Mur3 LINE L1 -3516 2364 1224 5 877 552 151 57 0 chr12 38402010 38402116 -82855414 - L1_Mur3 LINE L1 -7068 660 549 5 877 22 35 0 0 chr12 38402717 38402746 -82854784 + AT_rich Low_complexity Low_complexity 1 29 0 5 877 21 0 0 0 chr12 38402994 38403015 -82854515 + AT_rich Low_complexity Low_complexity 1 21 0 5 109 4883 186 21 5 chr12 38403079 38404169 -82853361 - Lx2B LINE L1 -439 6561 5449 5 878 1454 248 22 73 chr12 38404158 38404610 -82852920 + Lx2B LINE L1 6561 6989 -11 5 878 934 308 120 13 chr12 38404619 38405010 -82852520 - Lx8 LINE L1 0 7473 7041 5 878 625 365 35 14 chr12 38405344 38405630 -82851900 + B4A SINE B4 1 292 0 5 878 24 32 0 0 chr12 38406154 38406185 -82851345 + AT_rich Low_complexity Low_complexity 1 31 0 5 878 324 0 0 0 chr12 38406216 38406252 -82851278 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 878 892 270 95 34 chr12 38406266 38406615 -82850915 + ORR1D2 LTR MaLR 1 370 0 5 878 2278 170 57 8 chr12 38406882 38407561 -82849969 - L1_Mur2 LINE L1 -4451 1426 659 5 878 7879 164 55 11 chr12 38407560 38408965 -82848565 + Lx4A LINE L1 5587 7054 -4 5 878 2870 173 14 2 chr12 38409058 38409563 -82847967 - Lx2 LINE L1 -1 6996 6486 5 878 573 295 27 0 chr12 38409625 38409774 -82847756 + MER58A DNA MER1_type 49 201 -23 5 878 417 271 62 7 chr12 38411006 38411151 -82846379 - Lx2B LINE L1 -4 6996 6844 5 878 471 35 0 0 chr12 38411811 38411868 -82845662 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 878 26 30 0 0 chr12 38412290 38412323 -82845207 + AT_rich Low_complexity Low_complexity 1 33 0 5 878 243 0 0 0 chr12 38412801 38412828 -82844702 + (TAA)n Simple_repeat Simple_repeat 2 28 0 5 878 223 362 57 53 chr12 38413564 38413847 -82843683 + L2 LINE L2 2108 2391 -1028 5 878 337 402 55 16 chr12 38413982 38414366 -82843164 + L2 LINE L2 2684 3082 -337 5 878 328 300 8 32 chr12 38414804 38414928 -82842602 - B3 SINE B2 -6 210 90 5 878 191 88 0 29 chr12 38415605 38415640 -82841890 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 878 1005 93 7 0 chr12 38416101 38416240 -82841290 + B1_Mus1 SINE Alu 2 141 -7 5 878 474 65 0 0 chr12 38416244 38416306 -82841224 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 5 878 31 0 0 0 chr12 38416847 38416878 -82840652 + AT_rich Low_complexity Low_complexity 1 31 0 5 878 22 80 0 0 chr12 38417159 38417209 -82840321 + AT_rich Low_complexity Low_complexity 1 50 0 5 878 645 49 0 0 chr12 38417356 38417437 -82840093 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 5 878 569 14 14 0 chr12 38417437 38417507 -82840023 + (TCCC)n Simple_repeat Simple_repeat 1 71 0 5 878 1001 146 0 11 chr12 38417507 38417687 -82839843 + CT-rich Low_complexity Low_complexity 1 178 0 5 878 1189 131 10 5 chr12 38417721 38417921 -82839609 - L1_Mus3 LINE L1 0 6638 6438 5 878 351 234 31 41 chr12 38421694 38421792 -82835738 - ORR1B2 LTR MaLR -80 287 191 5 878 817 226 28 23 chr12 38421830 38422047 -82835483 + MTC-int LTR MaLR 1041 1258 0 5 878 370 238 12 0 chr12 38422047 38422127 -82835403 + MTC LTR MaLR 1 81 -340 5 878 5590 195 31 11 chr12 38422134 38423385 -82834145 - L1_Mur3 LINE L1 -706 5174 3899 5 878 4686 216 101 78 chr12 38423385 38423637 -82833893 - RLTR21 LTR ERVK 0 1404 1036 5 878 414 0 0 0 chr12 38423637 38423683 -82833847 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 878 4686 213 49 47 chr12 38423683 38424709 -82832821 - RLTR21 LTR ERVK -537 1035 2 5 878 2267 219 206 21 chr12 38424709 38425273 -82832257 - L1_Mur3 LINE L1 -1976 3904 3223 5 878 426 96 0 0 chr12 38425273 38425346 -82832184 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 5 878 2267 219 206 21 chr12 38425346 38425674 -82831856 - L1_Mur3 LINE L1 -2658 3222 2847 5 878 6303 113 41 3 chr12 38425684 38426652 -82830878 - Lx LINE L1 -5 6649 5645 5 878 1815 166 12 0 chr12 38426649 38426968 -82830562 + L1_Mur2 LINE L1 4426 4748 -1129 5 878 5787 200 61 56 chr12 38426957 38427129 -82830401 - L1_Mur3 LINE L1 -3014 2866 2747 5 878 4930 169 9 10 chr12 38427129 38428007 -82829523 - Lx2 LINE L1 0 6997 6121 5 878 5787 200 61 56 chr12 38428007 38428710 -82828820 - L1_Mur3 LINE L1 -3134 2746 2058 5 878 476 89 13 0 chr12 38428710 38428789 -82828741 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 878 5787 200 61 56 chr12 38428789 38428899 -82828631 - L1_Mur3 LINE L1 -3823 2057 1940 5 878 522 0 0 0 chr12 38428899 38428957 -82828573 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 5 878 5787 203 58 53 chr12 38428957 38429668 -82827862 - L1_Mur3 LINE L1 -3941 1939 1156 5 878 1752 272 46 16 chr12 38429667 38430167 -82827363 - L1_Mur3 LINE L1 -7158 570 56 5 878 629 300 0 28 chr12 38430542 38430758 -82826772 + B3 SINE B2 1 210 -6 5 878 206 219 0 0 chr12 38431336 38431377 -82826153 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 878 405 0 0 0 chr12 38431504 38431549 -82825981 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 878 237 46 88 44 chr12 38432939 38433007 -82824523 + T-rich Low_complexity Low_complexity 2 72 0 5 878 842 334 58 74 chr12 38433057 38433435 -82824095 - MTE2a LTR MaLR -2 377 6 5 878 231 373 89 19 chr12 38433506 38433719 -82823811 + Charlie24 DNA MER1_type 1603 1830 -620 5 878 2324 262 51 70 chr12 38434139 38434800 -82822730 + RMER1C Other Other 247 1237 -105 5 878 959 130 0 0 chr12 38434800 38434938 -82822592 - B1_Mus1 SINE Alu -10 138 1 5 878 525 16 0 0 chr12 38434944 38435006 -82822524 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 5 878 2324 260 52 72 chr12 38435006 38435123 -82822407 + RMER1C Other Other 1241 1341 -1 5 878 29 0 0 0 chr12 38436398 38436427 -82821103 + AT_rich Low_complexity Low_complexity 1 29 0 5 878 432 118 0 0 chr12 38436942 38437010 -82820520 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 878 796 316 21 39 chr12 38437504 38437886 -82819644 - MTE2b LTR MaLR 0 379 5 5 878 1851 133 46 55 chr12 38437892 38438219 -82819311 - ORR1A4 LTR MaLR 0 329 6 5 878 6597 173 13 127 chr12 38438222 38439894 -82817636 - ORR1A4-int LTR MaLR -27 1936 455 5 878 1390 155 4 75 chr12 38439894 38440159 -82817371 - ORR1A4 LTR MaLR -80 249 4 5 878 2570 255 98 78 chr12 38440590 38441433 -82816097 + RMER13A LTR ERVK 1 860 0 5 878 22 80 0 0 chr12 38441502 38441552 -82815978 + AT_rich Low_complexity Low_complexity 1 50 0 5 878 387 342 84 51 chr12 38441643 38441939 -82815591 - LTR37B LTR ERV1 -8 460 155 5 878 284 313 0 0 chr12 38442766 38442833 -82814697 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 5 878 281 321 39 0 chr12 38442833 38442851 -82814679 + ID4_ SINE ID 7 94 -58 5 878 296 102 0 20 chr12 38443727 38443777 -82813753 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 878 233 206 0 29 chr12 38445472 38445542 -82811988 - Lx6 LINE L1 -26 7434 7367 5 878 8524 251 51 36 chr12 38445571 38447811 -82809719 - Lx4B LINE L1 -130 6928 4639 5 878 234 0 0 0 chr12 38447811 38447837 -82809693 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 878 8524 210 29 11 chr12 38447837 38448594 -82808936 - Lx4B LINE L1 -1242 4638 3873 5 878 1042 197 11 0 chr12 38448598 38448786 -82808744 - ORR1B2 LTR MaLR -2 365 176 5 878 21 0 0 0 chr12 38449620 38449641 -82807889 + AT_rich Low_complexity Low_complexity 1 21 0 5 878 826 271 83 25 chr12 38449807 38450170 -82807360 + L1MA10 LINE L1 5880 6263 -71 6 878 22 35 0 0 chr12 38450293 38450322 -82807208 + AT_rich Low_complexity Low_complexity 1 29 0 6 878 304 78 25 49 chr12 38451030 38451111 -82806419 + T-rich Low_complexity Low_complexity 2 80 0 6 878 1949 203 61 15 chr12 38451141 38451536 -82805994 - MTC LTR MaLR -8 413 1 6 878 32 0 0 0 chr12 38451569 38451601 -82805929 + AT_rich Low_complexity Low_complexity 1 32 0 6 878 4097 156 71 7 chr12 38451601 38452319 -82805211 - Lx4A LINE L1 -1 7057 6294 6 878 2926 117 29 24 chr12 38452323 38452901 -82804629 + L1_Mur2 LINE L1 3008 3587 -327 6 878 3755 168 26 17 chr12 38452998 38453650 -82803880 - RMER19A LTR ERVK 0 737 80 6 878 6066 219 43 29 chr12 38454231 38455644 -82801886 - Lx5 LINE L1 -4 7046 5614 6 878 5612 177 25 57 chr12 38455637 38456136 -82801394 - L1_Mur2 LINE L1 -3322 2555 2046 6 878 234 0 0 0 chr12 38456136 38456162 -82801368 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 878 846 91 21 0 chr12 38456162 38456304 -82801226 + (GA)n Simple_repeat Simple_repeat 1 146 0 6 878 5612 177 25 57 chr12 38456304 38456585 -82800945 - L1_Mur2 LINE L1 -3832 2045 1767 6 878 3860 102 10 12 chr12 38456585 38457169 -82800361 + Lx3_Mus LINE L1 6419 7001 -8 6 878 5612 177 25 57 chr12 38457169 38457200 -82800330 - L1_Mur2 LINE L1 -4111 1766 1766 6 878 284 0 0 27 chr12 38457200 38457237 -82800293 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 6 878 5612 185 119 42 chr12 38457237 38458041 -82799489 - L1_Mur2 LINE L1 -4111 1766 902 6 878 379 305 400 9 chr12 38458525 38458845 -82798685 - LTR53 LTR ERVL -71 448 4 6 878 341 272 84 125 chr12 38458952 38459278 -82798252 + L1M4 LINE L1 5223 5533 -645 6 878 384 22 0 0 chr12 38459394 38459439 -82798091 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 878 383 326 95 15 chr12 38459678 38459815 -82797715 + B1_Mur1 SINE Alu 2 149 0 6 878 5531 36 1 0 chr12 38460039 38460702 -82796828 - L1Md_T LINE L1 -1 6581 5918 6 878 550 231 0 41 chr12 38461326 38461448 -82796082 - B1_Mur4 SINE Alu 0 150 34 6 878 444 37 0 0 chr12 38461523 38461577 -82795953 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 6 878 33305 109 16 17 chr12 38461583 38467936 -82789594 - L1Md_F2 LINE L1 -13 6569 220 6 878 24 32 0 0 chr12 38468035 38468066 -82789464 + AT_rich Low_complexity Low_complexity 1 31 0 6 878 1591 244 36 0 chr12 38468066 38468426 -82789104 - Lx5 LINE L1 -3 7047 6675 6 878 3252 48 2 2 chr12 38468429 38468825 -82788705 + MTA_Mm LTR MaLR 1 396 0 6 878 3957 34 0 8 chr12 38468825 38469327 -82788203 + MTA_Mm-int LTR MaLR 1 498 -600 6 878 335 67 0 0 chr12 38469313 38469358 -82788172 + MTB LTR MaLR 356 400 0 6 878 1684 172 26 13 chr12 38469371 38469677 -82787853 - Lx5 LINE L1 -393 6657 6348 6 878 5521 239 77 36 chr12 38472991 38474802 -82782728 - Lx9 LINE L1 0 7644 5761 6 878 187 347 69 30 chr12 38474823 38474924 -82782606 - L2a LINE L2 -19 3407 3303 6 878 26 50 0 0 chr12 38475670 38475710 -82781820 + AT_rich Low_complexity Low_complexity 1 40 0 6 878 3251 81 23 21 chr12 38475714 38476191 -82781339 - Lx LINE L1 -5 6649 6172 6 878 357 82 0 0 chr12 38476233 38476282 -82781248 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 878 233 347 0 69 chr12 38476710 38476812 -82780718 + B4A SINE B4 29 123 -169 6 878 277 322 135 39 chr12 38477202 38477380 -82780150 + B4A SINE B4 82 276 -16 6 878 22 35 0 0 chr12 38477432 38477461 -82780069 + AT_rich Low_complexity Low_complexity 1 29 0 6 878 324 0 0 0 chr12 38477722 38477758 -82779772 + (TTA)n Simple_repeat Simple_repeat 2 37 0 6 878 501 32 0 0 chr12 38478870 38478933 -82778597 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 878 23 68 0 0 chr12 38479450 38479494 -82778036 + AT_rich Low_complexity Low_complexity 1 44 0 6 878 2590 338 57 33 chr12 38479626 38481249 -82776281 + Lx8 LINE L1 5484 7139 -334 6 878 1885 279 33 20 chr12 38481258 38481803 -82775727 + Lx5 LINE L1 6490 7041 -9 6 878 231 282 14 27 chr12 38481819 38481892 -82775638 - ID_B1 SINE B4 -63 161 90 6 878 314 350 39 11 chr12 38482749 38482928 -82774602 - L2 LINE L2 -595 2824 2641 6 878 22 0 0 0 chr12 38483412 38483434 -82774096 + AT_rich Low_complexity Low_complexity 1 22 0 6 878 33 80 0 0 chr12 38483576 38483651 -82773879 + AT_rich Low_complexity Low_complexity 1 75 0 6 878 880 321 32 32 chr12 38483697 38483974 -82773556 - B4 SINE B4 0 292 16 6 878 26 30 0 0 chr12 38483974 38484007 -82773523 + AT_rich Low_complexity Low_complexity 1 33 0 6 878 536 344 5 15 chr12 38484856 38485051 -82772479 + B3A SINE B2 2 194 -4 6 878 694 60 10 10 chr12 38485409 38485510 -82772020 + (TC)n Simple_repeat Simple_repeat 1 101 0 6 878 307 41 20 20 chr12 38485910 38485960 -82771570 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 6 878 7112 112 12 11 chr12 38486214 38487528 -82770002 - L1_Mus4 LINE L1 0 6636 5328 6 878 30 45 0 0 chr12 38488619 38488663 -82768867 + AT_rich Low_complexity Low_complexity 1 44 0 6 878 702 256 29 10 chr12 38489112 38489321 -82768209 + Lx7 LINE L1 7482 7694 -2 6 878 504 93 0 0 chr12 38489684 38489759 -82767771 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 878 399 160 0 0 chr12 38489759 38489853 -82767677 + GA-rich Low_complexity Low_complexity 2 95 0 6 878 378 208 25 49 chr12 38489871 38489964 -82767566 + B1_Mur4 SINE Alu 53 144 -6 6 878 234 226 0 19 chr12 38489967 38490006 -82767524 + polypurine Low_complexity Low_complexity 2 39 0 6 878 489 34 0 0 chr12 38490006 38490065 -82767465 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 6 878 234 226 0 19 chr12 38490065 38490079 -82767451 + polypurine Low_complexity Low_complexity 40 53 0 6 878 231 330 56 11 chr12 38491628 38491717 -82765813 - MLT1H LTR MaLR -377 172 80 6 878 463 295 17 46 chr12 38492874 38493048 -82764482 + RMER5 LTR ERV1 41 209 -325 6 878 22 0 0 0 chr12 38493102 38493124 -82764406 + AT_rich Low_complexity Low_complexity 1 22 0 6 878 1766 216 39 18 chr12 38493133 38493327 -82764203 - MTC LTR MaLR -31 390 202 6 878 1403 97 0 23 chr12 38493327 38493548 -82763982 - L1Md_F2 LINE L1 0 6582 6367 6 878 1766 216 39 18 chr12 38493548 38493735 -82763795 - MTC LTR MaLR -220 201 2 6 878 616 301 26 64 chr12 38493793 38494042 -82763488 + RMER5 LTR ERV1 266 504 -30 6 878 1366 177 85 31 chr12 38494042 38494382 -82763148 + RMER16 LTR ERVK 1 533 0 6 878 180 350 58 10 chr12 38494624 38494728 -82762802 + L2 LINE L2 2362 2470 -949 6 878 2047 208 42 8 chr12 38494835 38495237 -82762293 - RLTR17 LTR ERVK 0 692 277 6 878 283 277 0 0 chr12 38495975 38496040 -82761490 - ID_B1 SINE B4 -33 191 127 6 878 341 43 21 0 chr12 38497669 38497716 -82759814 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 878 1544 52 0 5 chr12 38498144 38498336 -82759194 - B2_Mm1t SINE B2 -1 192 2 6 878 225 0 0 0 chr12 38500061 38500086 -82757444 + (A)n Simple_repeat Simple_repeat 1 25 0 1 878 207 0 0 0 chr12 38500422 38500445 -82757085 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2 878 725 171 18 6 chr12 38501568 38501739 -82755791 + CT-rich Low_complexity Low_complexity 1 173 0 3 878 269 100 20 0 chr12 38501751 38501801 -82755729 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 878 246 297 48 29 chr12 38502776 38502880 -82754650 - MLT1L LTR MaLR -181 429 324 5 878 500 318 26 26 chr12 38503725 38503880 -82753650 + RSINE1 SINE B4 11 165 0 6 878 1176 149 0 5 chr12 38504157 38504353 -82753177 + B2_Mm2 SINE B2 1 195 0 7 878 204 315 0 0 chr12 38504669 38504723 -82752807 - L2a LINE L2 -32 3394 3341 8 878 32223 6 0 0 chr12 38504772 38508438 -82749092 + L1Md_A LINE L1 1921 5586 -297 9 878 9010 3 0 0 chr12 38508438 38509472 -82748058 + L1Md_A LINE L1 5587 6582 0 9 878 594 162 0 0 chr12 38511653 38511770 -82745760 + CT-rich Low_complexity Low_complexity 2 118 0 1 878 22 0 0 0 chr12 38512737 38512759 -82744771 + AT_rich Low_complexity Low_complexity 1 22 0 1 878 406 278 22 36 chr12 38513124 38513262 -82744268 - Lx9 LINE L1 -405 7239 7104 1 878 289 302 88 62 chr12 38513267 38513380 -82744150 + Lx8 LINE L1 7132 7247 -226 1 878 528 179 0 0 chr12 38513720 38513804 -82743726 - RMER1A Other Other -398 632 549 1 878 197 119 24 0 chr12 38514409 38514451 -82743079 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1 878 7772 62 3 0 chr12 38515637 38517100 -82740430 - L1Md_F2 LINE L1 0 6582 5115 1 878 13243 58 2 0 chr12 38517127 38518863 -82738667 - L1Md_F2 LINE L1 -2498 3385 1647 1 878 195 327 0 0 chr12 38518889 38518941 -82738589 + MER5A DNA MER1_type 125 176 -13 1 878 252 284 49 12 chr12 38519109 38519191 -82738339 - MLT1J1 LTR MaLR -310 134 50 1 878 256 296 42 0 chr12 38519226 38519297 -82738233 + PB1 SINE Alu 1 74 -53 1 878 505 272 59 86 chr12 38519356 38519577 -82737953 + B3A SINE B2 2 216 0 2 878 209 281 0 43 chr12 38519580 38519673 -82737857 + GA-rich Low_complexity Low_complexity 3 91 0 2 878 397 323 98 58 chr12 38520993 38521167 -82736363 - B4A SINE B4 -71 221 41 2 878 490 128 61 0 chr12 38521167 38521315 -82736215 + (TCTA)n Simple_repeat Simple_repeat 1 157 0 2 878 3144 193 129 78 chr12 38521555 38521639 -82735891 - RMER19B LTR ERVK -11 891 780 2 878 486 0 0 0 chr12 38521639 38521693 -82735837 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 878 3144 193 129 78 chr12 38521693 38522451 -82735079 - RMER19B LTR ERVK -123 779 7 2 878 198 0 0 0 chr12 38522567 38522589 -82734941 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2 878 3740 252 100 35 chr12 38522936 38524268 -82733262 + RMER1A Other Other 10 860 -170 2 878 537 58 0 0 chr12 38524268 38524337 -82733193 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 878 390 21 0 0 chr12 38524337 38524383 -82733147 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 878 3740 219 145 8 chr12 38524383 38524503 -82733027 + RMER1A Other Other 861 1028 -2 2 878 2194 254 73 9 chr12 38524605 38525153 -82732377 - Lx6 LINE L1 -24 7436 6854 3 878 1182 243 25 68 chr12 38525345 38525816 -82731714 + Lx9 LINE L1 5502 5962 -1682 3 878 2779 238 78 63 chr12 38525821 38526696 -82730834 + RMER19B LTR ERVK 1 888 -14 3 878 904 210 86 19 chr12 38526712 38526921 -82730609 + URR1B DNA MER1_type 1 223 -2 3 878 2092 305 120 23 chr12 38527134 38528107 -82729423 + Lx9 LINE L1 6344 7410 -234 3 878 1960 201 66 5 chr12 38528107 38528502 -82729028 - MTC LTR MaLR 0 421 3 3 878 2092 305 120 23 chr12 38528502 38528639 -82728891 + Lx9 LINE L1 7411 7561 -83 3 878 24 53 0 0 chr12 38528667 38528705 -82728825 + AT_rich Low_complexity Low_complexity 1 38 0 3 878 1742 78 4 0 chr12 38529671 38529903 -82727627 - L1Md_F2 LINE L1 -456 6126 5894 3 878 1861 96 11 0 chr12 38529903 38530163 -82727367 + L1_Mus1 LINE L1 6305 6567 0 3 878 1463 161 11 22 chr12 38530163 38530197 -82727333 - L1_Mus1 LINE L1 -674 5893 5857 3 878 25 0 0 0 chr12 38531576 38531601 -82725929 + AT_rich Low_complexity Low_complexity 1 25 0 3 878 185 291 109 0 chr12 38531864 38531919 -82725611 + L2 LINE L2 97 157 -3262 4 878 413 254 36 58 chr12 38531919 38532057 -82725473 + HERVL74-int LTR ERVL 2515 2649 -3036 4 878 1935 338 101 84 chr12 38532087 38532945 -82724585 + HERVL74-int LTR ERVL 2708 3609 -2076 4 878 223 286 0 0 chr12 38532945 38533008 -82724522 + L4 LINE RTE 730 792 -1237 4 878 1935 338 101 84 chr12 38533008 38533967 -82723563 + HERVL74-int LTR ERVL 3610 4619 -1066 4 878 494 321 24 6 chr12 38534000 38534166 -82723364 + ID_B1 SINE B4 47 215 -9 4 878 224 246 17 17 chr12 38534394 38534452 -82723078 - B4 SINE B4 -208 84 27 4 878 27 49 0 0 chr12 38534529 38534570 -82722960 + AT_rich Low_complexity Low_complexity 1 41 0 4 878 593 275 7 0 chr12 38534593 38534735 -82722795 + B1_Mur1 SINE Alu 1 143 -6 4 878 207 0 0 0 chr12 38535028 38535051 -82722479 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 878 330 26 0 0 chr12 38535051 38535089 -82722441 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 878 441 0 0 0 chr12 38535089 38535137 -82722393 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 879 1571 120 17 110 chr12 38535291 38535646 -82721884 + RLTRETN_Mm LTR ERVK 1 322 0 5 879 642 258 120 10 chr12 38535781 38535973 -82721557 - B4A SINE B4 -20 272 60 5 879 26 0 0 0 chr12 38536127 38536153 -82721377 + AT_rich Low_complexity Low_complexity 1 26 0 5 879 596 283 7 33 chr12 38536419 38536569 -82720961 + B1_Mur2 SINE Alu 3 148 -1 5 879 1314 88 0 0 chr12 38536595 38536821 -82720709 + (GAAA)n Simple_repeat Simple_repeat 1 226 0 5 879 594 0 0 0 chr12 38537033 38537099 -82720431 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 5 879 309 337 127 51 chr12 38537122 38537319 -82720211 - MER20 DNA MER1_type -4 215 4 5 879 25 51 0 0 chr12 38537358 38537397 -82720133 + AT_rich Low_complexity Low_complexity 1 39 0 5 879 494 311 5 53 chr12 38537619 38537809 -82719721 + B3A SINE B2 2 182 -16 5 879 468 0 0 0 chr12 38538562 38538614 -82718916 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 879 1310 274 123 19 chr12 38538615 38539088 -82718442 - Lx8 LINE L1 -139 7334 6813 6 879 22 56 0 0 chr12 38539838 38539874 -82717656 + AT_rich Low_complexity Low_complexity 1 36 0 6 879 202 319 31 52 chr12 38540552 38540648 -82716882 + L2c LINE L2 3256 3349 -38 6 879 5174 219 42 16 chr12 38541805 38542902 -82714628 - Lx5 LINE L1 -47 7003 5878 6 879 871 193 82 0 chr12 38542904 38543111 -82714419 + L1_Mur2 LINE L1 1489 1712 -4165 6 879 441 0 0 0 chr12 38543226 38543275 -82714255 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 879 326 352 46 0 chr12 38546048 38546156 -82711374 + PB1D10 SINE Alu 1 113 -4 6 879 797 264 30 10 chr12 38546230 38546429 -82711101 + B3 SINE B2 9 211 -5 6 879 470 168 0 9 chr12 38547618 38547732 -82709798 + GA-rich Low_complexity Low_complexity 2 114 0 6 879 8539 116 12 3 chr12 38549077 38551168 -82706362 - L1_Mus3 LINE L1 0 6638 4529 6 879 2030 87 28 0 chr12 38552672 38552959 -82704571 + L1_Mus2 LINE L1 6272 6566 0 7 879 908 119 6 0 chr12 38553033 38553192 -82704338 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 7 879 21 36 0 0 chr12 38553532 38553560 -82703970 + AT_rich Low_complexity Low_complexity 1 28 0 7 879 4772 56 21 2 chr12 38553641 38554249 -82703281 - L1Md_F3 LINE L1 -14 6570 5951 7 879 234 91 0 0 chr12 38554402 38554435 -82703095 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 7 879 198 0 0 0 chr12 38554659 38554681 -82702849 + (T)n Simple_repeat Simple_repeat 1 22 0 7 879 1080 82 7 0 chr12 38554683 38554830 -82702700 - B1_Mus1 SINE Alu 0 148 1 7 879 264 293 0 33 chr12 38556225 38556345 -82701185 + CT-rich Low_complexity Low_complexity 2 117 0 7 879 5671 45 11 10 chr12 38556403 38556562 -82700968 + L1Md_F2 LINE L1 5870 6034 -548 7 879 2036 94 9 53 chr12 38556562 38556899 -82700631 + RLTRETN_Mm LTR ERVK 1 322 0 7 879 5671 45 11 10 chr12 38556899 38557451 -82700079 + L1Md_F2 LINE L1 6035 6582 0 7 879 224 191 32 0 chr12 38558300 38558363 -82699167 + GA-rich Low_complexity Low_complexity 4 68 0 8 879 211 205 0 0 chr12 38558393 38558432 -82699098 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 879 258 160 0 0 chr12 38559258 38559308 -82698222 + T-rich Low_complexity Low_complexity 1 50 0 8 879 1125 51 7 0 chr12 38559487 38559625 -82697905 - B1_Mm SINE Alu -8 139 1 8 879 288 188 0 0 chr12 38559906 38559970 -82697560 + (TA)n Simple_repeat Simple_repeat 2 65 0 8 879 307 374 101 0 chr12 38559970 38560109 -82697421 + B4 SINE B4 77 229 -63 8 879 1112 106 0 6 chr12 38560128 38560299 -82697231 + (GAA)n Simple_repeat Simple_repeat 1 170 0 8 879 346 174 0 96 chr12 38560299 38560445 -82697085 + G-rich Low_complexity Low_complexity 2 133 0 8 879 234 328 29 43 chr12 38560445 38560515 -82697015 + B4A SINE B4 223 291 -1 8 879 189 0 0 0 chr12 38561137 38561158 -82696372 + (T)n Simple_repeat Simple_repeat 1 21 0 8 879 1184 68 0 0 chr12 38561158 38561305 -82696225 - B1_Mm SINE Alu 0 147 1 8 879 399 21 0 0 chr12 38561559 38561607 -82695923 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 879 254 276 39 13 chr12 38561836 38561913 -82695617 + L2 LINE L2 2722 2800 -619 9 879 321 339 18 0 chr12 38562388 38562500 -82695030 - MER5A DNA MER1_type -75 114 1 9 879 204 125 0 0 chr12 38562689 38562721 -82694809 + (T)n Simple_repeat Simple_repeat 1 32 0 9 879 276 295 51 43 chr12 38562786 38562903 -82694627 - B1_Mur4 SINE Alu 0 150 33 9 879 1199 284 125 23 chr12 38563493 38564094 -82693436 - L1MC2 LINE L1 -11 6333 5672 9 879 423 0 0 0 chr12 38564925 38564972 -82692558 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 9 879 365 292 182 66 chr12 38564993 38565114 -82692416 + RSINE1 SINE B4 12 146 -19 9 879 216 0 0 0 chr12 38565122 38565146 -82692384 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 879 21 82 0 0 chr12 38565571 38565620 -82691910 + AT_rich Low_complexity Low_complexity 1 49 0 9 879 739 267 82 153 chr12 38565654 38566105 -82691425 - RLTR23 LTR ERV1 -4 426 8 1 879 890 304 25 41 chr12 38566438 38566880 -82690650 + L1MA4 LINE L1 5485 5919 -381 1 879 1204 266 68 3 chr12 38567038 38567389 -82690141 - ORR1D1 LTR MaLR 0 374 1 1 879 30 27 0 0 chr12 38567570 38567607 -82689923 + AT_rich Low_complexity Low_complexity 1 37 0 1 879 390 260 9 57 chr12 38569750 38569856 -82687674 + PB1D9 SINE Alu 2 102 -18 1 879 1635 169 16 7 chr12 38569857 38570160 -82687370 + Lx2 LINE L1 6692 6997 0 1 879 344 221 61 38 chr12 38570305 38570437 -82687093 - Lx9 LINE L1 -26 7618 7484 1 879 184 111 22 22 chr12 38570563 38570609 -82686921 + T-rich Low_complexity Low_complexity 2 47 0 1 879 23 0 0 0 chr12 38570656 38570679 -82686851 + AT_rich Low_complexity Low_complexity 1 23 0 1 879 28709 67 10 12 chr12 38570713 38575168 -82682362 + L1Md_Gf LINE L1 449 4830 -1056 1 879 1861 81 4 0 chr12 38575168 38575428 -82682102 + L1_Mm LINE L1 4150 4410 -1473 1 879 21 0 0 0 chr12 38576138 38576159 -82681371 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 628 287 30 51 chr12 38576163 38576494 -82681036 - Lx9 LINE L1 -20 7624 7301 1 879 2657 295 44 21 chr12 38576516 38577462 -82680068 - Lx9 LINE L1 -435 7209 6242 1 879 213 203 40 0 chr12 38577465 38577539 -82679991 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 879 1288 264 18 15 chr12 38577623 38577965 -82679565 - L1_Rod LINE L1 -117 5730 5388 1 879 918 243 25 82 chr12 38577984 38578404 -82679126 + L1_Mur3 LINE L1 4957 5383 -497 1 879 1058 99 151 22 chr12 38579719 38579904 -82677626 - Lx LINE L1 0 7009 6801 1 879 1637 112 4 15 chr12 38579917 38580179 -82677351 + L1_Mur1 LINE L1 3631 3889 -1997 1 879 1982 102 16 0 chr12 38580888 38581193 -82676337 - Lx LINE L1 -2 6652 6343 1 879 1677 134 4 2 chr12 38581193 38581466 -82676064 + Lx LINE L1 5858 6120 -534 1 879 2191 195 142 57 chr12 38581642 38582274 -82675256 + RMER6C LTR ERVK 3 688 -2 1 879 460 223 21 0 chr12 38582553 38582647 -82674883 - ID_B1 SINE B4 0 224 129 1 879 189 0 0 0 chr12 38583143 38583164 -82674366 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 879 21 0 0 0 chr12 38583910 38583931 -82673599 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 1307 70 9 5 chr12 38584255 38584474 -82673056 + (GAAA)n Simple_repeat Simple_repeat 1 220 0 1 879 690 69 0 0 chr12 38584526 38584627 -82672903 + (TC)n Simple_repeat Simple_repeat 2 102 0 1 879 304 296 155 20 chr12 38585148 38585400 -82672130 + L1M5 LINE L1 3953 4238 -1908 1 879 676 288 145 8 chr12 38586114 38586625 -82670905 - L1MCa LINE L1 -3342 2979 2399 1 879 242 218 35 52 chr12 38586922 38587038 -82670492 + A-rich Low_complexity Low_complexity 2 115 0 1 879 317 302 54 31 chr12 38587048 38587178 -82670352 - Lx7 LINE L1 -375 7321 7189 1 879 775 278 185 70 chr12 38587327 38587555 -82669975 - L1MCa LINE L1 -4530 1978 1741 1 879 1308 217 150 0 chr12 38587555 38587869 -82669661 + ORR1B2 LTR MaLR 5 365 -2 1 879 775 278 185 70 chr12 38587869 38587882 -82669648 - L1MCa LINE L1 -4768 1740 1732 1 879 3709 118 62 3 chr12 38587882 38588467 -82669063 + Lx LINE L1 6024 6642 -12 1 879 775 278 185 70 chr12 38588467 38588564 -82668966 - L1MCa LINE L1 -4777 1731 1655 1 879 411 73 0 0 chr12 38588564 38588619 -82668911 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 879 775 278 185 70 chr12 38588619 38589258 -82668272 - L1MCa LINE L1 -4854 1654 887 1 879 396 153 56 0 chr12 38590182 38590254 -82667276 - MTEb LTR MaLR -5 374 299 1 879 702 65 0 0 chr12 38590256 38590348 -82667182 + (TTTTC)n Simple_repeat Simple_repeat 3 94 0 1 879 301 267 74 8 chr12 38590348 38590469 -82667061 - L1MEe LINE L1 -4029 825 697 1 879 2566 111 3 5 chr12 38590855 38591244 -82666286 - L1_Mus4 LINE L1 -7 6629 6242 1 879 4577 112 37 0 chr12 38591244 38592275 -82665255 + L1_Mus4 LINE L1 5168 6244 -392 1 879 1601 131 19 7 chr12 38592298 38592567 -82664963 - Lx3B LINE L1 0 6973 6702 1 879 23 101 0 0 chr12 38592915 38592994 -82664536 + AT_rich Low_complexity Low_complexity 1 79 0 1 879 284 250 212 37 chr12 38593328 38593519 -82664011 - MTE2a LTR MaLR -2 377 154 1 879 334 314 0 23 chr12 38593540 38593628 -82663902 - MTE2a LTR MaLR -293 86 1 1 879 618 234 35 0 chr12 38594080 38594221 -82663309 + B1_Mur2 SINE Alu 2 147 -2 1 879 351 96 0 0 chr12 38594222 38594274 -82663256 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 1 879 346 248 74 39 chr12 38595237 38595432 -82662098 + L1_Mur1 LINE L1 679 739 -6245 1 879 5424 103 42 9 chr12 38595433 38596273 -82661257 + L1_Mur1 LINE L1 4929 5795 -91 1 879 425 145 144 9 chr12 38596270 38596381 -82661149 + L1Md_F2 LINE L1 6454 6579 -3 1 879 7472 124 20 10 chr12 38596381 38597557 -82659973 + Lx3B LINE L1 5783 6970 -3 1 879 332 71 18 0 chr12 38597700 38597756 -82659774 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 879 369 396 0 0 chr12 38597764 38597875 -82659655 - RSINE1 SINE B4 -31 134 24 1 879 182 354 38 12 chr12 38599407 38599487 -82658043 + MIRm SINE MIR 195 276 0 1 879 567 122 0 0 chr12 38599765 38599855 -82657675 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 879 193 326 119 15 chr12 38599883 38600017 -82657513 - MIR SINE MIR -62 200 53 1 879 202 344 16 0 chr12 38600093 38600157 -82657373 + MIR3 SINE MIR 126 190 -18 1 879 243 0 0 0 chr12 38600257 38600284 -82657246 + (A)n Simple_repeat Simple_repeat 1 27 0 1 879 922 166 15 5 chr12 38600675 38600875 -82656655 + Lx LINE L1 6439 6640 -14 1 879 876 46 0 0 chr12 38600877 38600986 -82656544 + (GAAA)n Simple_repeat Simple_repeat 3 111 0 1 879 446 320 117 11 chr12 38601527 38601707 -82655823 + B4A SINE B4 90 288 -4 1 879 366 107 0 0 chr12 38601725 38601781 -82655749 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 879 254 29 0 28 chr12 38602095 38602131 -82655399 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 879 2588 218 132 78 chr12 38602293 38603202 -82654328 - RMER17B LTR ERVK 0 958 1 1 879 243 125 0 0 chr12 38603551 38603591 -82653939 + (A)n Simple_repeat Simple_repeat 1 40 0 1 879 7796 80 3 5 chr12 38603671 38605395 -82652135 + L1_Mus1 LINE L1 4850 6567 0 1 879 261 0 0 0 chr12 38605870 38605899 -82651631 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 879 461 170 9 0 chr12 38605899 38606011 -82651519 + GA-rich Low_complexity Low_complexity 2 114 0 1 879 381 22 0 0 chr12 38606050 38606096 -82651434 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 879 468 0 0 0 chr12 38606867 38606919 -82650611 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 879 953 123 0 6 chr12 38609295 38609475 -82648055 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 879 381 22 0 0 chr12 38611418 38611464 -82646066 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 879 402 325 14 81 chr12 38611644 38611855 -82645675 - MIR SINE MIR -51 211 15 1 879 493 343 38 0 chr12 38612929 38613139 -82644391 - ID_B1 SINE B4 -4 220 3 1 879 1636 32 0 0 chr12 38613160 38613350 -82644180 - B2_Mm1t SINE B2 -3 190 1 1 879 253 276 87 80 chr12 38614278 38614416 -82643114 + B4 SINE B4 60 198 -94 1 879 468 281 0 52 chr12 38614388 38614542 -82642988 + B4A SINE B4 147 292 0 1 879 378 42 0 0 chr12 38614653 38614701 -82642829 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 879 1049 144 112 19 chr12 38616464 38616670 -82640860 + URR1A DNA MER1_type 1 225 -1 1 879 615 104 0 0 chr12 38617809 38617915 -82639615 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 879 246 352 60 32 chr12 38617924 38618141 -82639389 - L2 LINE L2 -1282 2137 1915 1 879 315 125 27 14 chr12 38619920 38619993 -82637537 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 879 343 44 22 0 chr12 38620005 38620050 -82637480 - HAL1-3A_ME LINE L1 -847 2011 1966 1 879 457 286 0 9 chr12 38620200 38620313 -82637217 - B4 SINE B4 -156 136 25 1 879 1185 61 0 0 chr12 38620322 38620485 -82637045 + (TC)n Simple_repeat Simple_repeat 2 164 0 1 879 201 39 0 0 chr12 38620485 38620510 -82637020 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 879 954 150 60 22 chr12 38620676 38620860 -82636670 - B2_Mm2 SINE B2 -4 191 1 1 879 205 167 0 0 chr12 38621491 38621527 -82636003 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 879 618 14 0 0 chr12 38622244 38622315 -82635215 + (CAAAA)n Simple_repeat Simple_repeat 2 72 0 1 879 243 0 0 0 chr12 38622950 38622977 -82634553 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 879 784 211 87 5 chr12 38622991 38623186 -82634344 - Lx3C LINE L1 -3 6973 6763 1 879 498 158 23 6 chr12 38623191 38623363 -82634167 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 1 879 5266 167 63 40 chr12 38623409 38623945 -82633585 - Lx3C LINE L1 -239 6737 6192 1 879 561 15 0 0 chr12 38623945 38624011 -82633519 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 879 16741 176 35 121 chr12 38624011 38626626 -82630904 - Lx3C LINE L1 -785 6191 3931 1 879 886 110 19 7 chr12 38626626 38626781 -82630749 - L1_Mus3 LINE L1 -3 6635 6479 1 879 16741 180 28 144 chr12 38626781 38629799 -82627731 - Lx3C LINE L1 -1956 3930 1152 1 879 1712 150 29 43 chr12 38629799 38630147 -82627383 - Lx LINE L1 -1 6653 6311 1 879 1772 234 58 37 chr12 38630147 38630504 -82627026 - Lx3C LINE L1 -5833 1151 799 1 879 426 315 0 30 chr12 38631265 38631396 -82626134 - RSINE1 SINE B4 -36 129 3 1 879 198 353 0 0 chr12 38631671 38631739 -82625791 - L2 LINE L2 -968 2451 2384 1 879 205 191 0 0 chr12 38632017 38632059 -82625471 + T-rich Low_complexity Low_complexity 1 42 0 1 879 395 346 55 30 chr12 38632077 38632241 -82625289 - B4A SINE B4 -116 176 9 1 879 414 39 0 0 chr12 38633580 38633632 -82623898 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 879 443 318 0 85 chr12 38633699 38633864 -82623666 - B4A SINE B4 -59 233 83 1 879 804 173 0 0 chr12 38633868 38634018 -82623512 + CT-rich Low_complexity Low_complexity 1 150 0 1 879 1014 108 11 17 chr12 38634018 38634196 -82623334 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 1 879 228 86 0 0 chr12 38634664 38634699 -82622831 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 879 1026 124 0 0 chr12 38636603 38636748 -82620782 + B1_Mus1 SINE Alu 1 145 -3 1 879 372 22 0 0 chr12 38636754 38636799 -82620731 + (CAA)n Simple_repeat Simple_repeat 1 45 0 1 879 1015 127 6 6 chr12 38636849 38637023 -82620507 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 1 879 258 194 177 0 chr12 38637072 38637134 -82620396 - tRNA-Ala-GCY_ tRNA tRNA -1 74 2 2 879 292 302 93 9 chr12 38637181 38637288 -82620242 + RSINE1 SINE B4 1 116 -49 2 879 6087 99 27 2 chr12 38637288 38638167 -82619363 - Lx3_Mus LINE L1 -73 6936 6036 2 879 343 331 93 0 chr12 38638526 38638665 -82618865 + RSINE1 SINE B4 2 153 -12 2 879 241 170 0 0 chr12 38639102 38639149 -82618381 + L1_Mur3 LINE L1 2762 2808 -3072 2 879 502 325 45 0 chr12 38639387 38639541 -82617989 - RSINE1 SINE B4 0 165 5 2 879 24 32 0 0 chr12 38640589 38640620 -82616910 + AT_rich Low_complexity Low_complexity 1 31 0 2 879 21 0 0 0 chr12 38640923 38640944 -82616586 + AT_rich Low_complexity Low_complexity 1 21 0 2 879 31 0 0 0 chr12 38642938 38642969 -82614561 + AT_rich Low_complexity Low_complexity 1 31 0 2 879 1015 253 54 6 chr12 38642984 38643271 -82614259 - Lx6 LINE L1 -1399 6061 5766 2 879 13840 206 104 82 chr12 38643326 38643354 -82614176 - L1_Mur3 LINE L1 -78 5802 5777 2 879 1616 133 3 46 chr12 38643354 38643638 -82613892 - Lx3A LINE L1 -6 6975 6704 2 879 13840 206 104 82 chr12 38643638 38644787 -82612743 - L1_Mur3 LINE L1 -104 5776 4640 2 879 2426 126 10 20 chr12 38644787 38645183 -82612347 - Lx LINE L1 -7 6647 6256 2 879 13840 206 104 82 chr12 38645183 38647639 -82609891 - L1_Mur3 LINE L1 -1241 4639 2053 2 879 582 28 0 0 chr12 38647639 38647711 -82609819 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 879 13840 222 90 66 chr12 38647711 38649205 -82608325 - L1_Mur3 LINE L1 -3828 2052 72 2 879 422 239 8 17 chr12 38649295 38649415 -82608115 - PB1D9 SINE Alu -1 119 2 2 879 794 189 21 0 chr12 38649923 38650066 -82607464 - B1_Mus2 SINE Alu 0 147 2 2 879 396 0 0 0 chr12 38650204 38650248 -82607282 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 879 385 275 72 18 chr12 38650569 38650680 -82606850 - B4A SINE B4 -174 118 2 2 879 388 372 120 5 chr12 38650680 38650810 -82606720 - B4 SINE B4 -60 232 78 2 879 345 24 0 0 chr12 38650810 38650852 -82606678 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 879 198 71 0 0 chr12 38650852 38650879 -82606651 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 879 388 372 120 5 chr12 38650879 38650952 -82606578 - B4 SINE B4 -215 77 5 2 879 21 0 0 0 chr12 38650969 38650990 -82606540 + AT_rich Low_complexity Low_complexity 1 21 0 2 879 17799 94 16 3 chr12 38651212 38654513 -82603017 - MusHAL1 LINE L1 -11 3342 1 2 879 228 347 31 21 chr12 38655274 38655371 -82602159 + RSINE1 SINE B4 6 103 -62 2 879 29 0 0 0 chr12 38655371 38655400 -82602130 + AT_rich Low_complexity Low_complexity 1 29 0 2 879 4086 31 0 0 chr12 38655786 38656262 -82601268 - L1Md_F2 LINE L1 -3 6579 6104 2 879 2488 140 0 0 chr12 38656288 38656674 -82600856 + Lx LINE L1 6262 6647 -7 2 879 378 0 0 0 chr12 38656801 38656843 -82600687 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 879 359 127 16 0 chr12 38656870 38656933 -82600597 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 879 1116 95 0 0 chr12 38656990 38657138 -82600392 + B1_Mus1 SINE Alu 1 148 0 2 879 272 283 17 0 chr12 38657186 38657246 -82600284 - B1F SINE Alu -13 136 76 2 879 1379 185 15 0 chr12 38657481 38657740 -82599790 - Lx LINE L1 -1 6653 6391 2 879 783 283 29 52 chr12 38657741 38657926 -82599604 + Lx9 LINE L1 6418 6608 -1036 2 879 2731 59 0 6 chr12 38657926 38658284 -82599246 + L1Md_F2 LINE L1 6227 6582 0 2 879 783 283 29 52 chr12 38658284 38658370 -82599160 + Lx9 LINE L1 6609 6683 -961 2 879 286 307 45 11 chr12 38658591 38658680 -82598850 + B1F1 SINE Alu 6 97 -52 2 879 243 0 0 0 chr12 38658689 38658716 -82598814 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 2 879 31 58 0 0 chr12 38660163 38660215 -82597315 + AT_rich Low_complexity Low_complexity 1 52 0 2 879 1627 178 152 15 chr12 38660822 38661165 -82596365 + ORR1B1 LTR MaLR 5 394 0 2 879 312 289 38 30 chr12 38661892 38662024 -82595506 + L1MC1 LINE L1 696 828 -5680 2 879 543 311 74 34 chr12 38662155 38662305 -82595225 + L1MC1 LINE L1 824 985 -5523 2 879 2026 98 27 42 chr12 38662305 38662635 -82594895 + Lx LINE L1 6320 6644 -10 2 879 543 311 74 34 chr12 38662635 38662654 -82594876 + L1MC1 LINE L1 986 1003 -5505 2 879 831 21 0 0 chr12 38662654 38662751 -82594779 + (GAA)n Simple_repeat Simple_repeat 2 98 0 2 879 543 311 74 34 chr12 38662751 38663110 -82594420 + L1MC1 LINE L1 1004 1374 -5134 2 879 213 39 0 0 chr12 38663188 38663214 -82594316 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 2 879 885 89 0 0 chr12 38663214 38663338 -82594192 + (AGGGGG)n Simple_repeat Simple_repeat 6 129 0 2 879 948 284 135 56 chr12 38664459 38666042 -82591488 + L1MC1 LINE L1 1433 3125 -3196 2 879 25 75 0 0 chr12 38666110 38666163 -82591367 + AT_rich Low_complexity Low_complexity 1 53 0 2 879 219 314 14 14 chr12 38666167 38666238 -82591292 + ID4_ SINE ID 12 82 -1 2 109 295 247 157 12 chr12 38666238 38666410 -82591120 + L1MC1 LINE L1 3285 3481 -2840 2 880 304 328 22 50 chr12 38666487 38666705 -82590825 + MTEa LTR MaLR 1 285 -94 2 880 228 172 0 0 chr12 38666750 38666808 -82590722 + T-rich Low_complexity Low_complexity 1 58 0 2 880 1129 68 7 0 chr12 38666808 38666954 -82590576 - B1_Mm SINE Alu 0 147 1 2 880 457 255 34 72 chr12 38667020 38667227 -82590303 + L1MC1 LINE L1 3597 3795 -2526 2 880 304 315 18 27 chr12 38667248 38667359 -82590171 + L1MC1 LINE L1 3864 3973 -2348 2 880 320 331 30 15 chr12 38667754 38667901 -82589629 + B3 SINE B2 69 216 0 2 880 23 0 0 53 chr12 38667905 38667920 -82589610 + AT_rich Low_complexity Low_complexity 1 15 0 2 880 6797 55 1 0 chr12 38667920 38668771 -82588759 + L1Md_F2 LINE L1 5730 6581 -1 2 880 23 0 0 53 chr12 38668771 38668793 -82588737 + AT_rich Low_complexity Low_complexity 1 21 0 2 880 1547 369 96 62 chr12 38668905 38669882 -82587648 + MTE-int LTR MaLR 29 1074 -506 2 880 2759 101 2 35 chr12 38669882 38670313 -82587217 + L1_Mus1 LINE L1 6151 6567 0 2 880 1547 369 96 62 chr12 38670313 38670778 -82586752 + MTE-int LTR MaLR 1075 1519 -61 2 880 285 285 117 51 chr12 38670920 38671057 -82586473 + ORR1E LTR MaLR 106 251 -108 2 880 969 294 61 43 chr12 38671188 38671747 -82585783 + L1MC1 LINE L1 4780 5348 -973 2 880 23 86 0 0 chr12 38671777 38671835 -82585695 + AT_rich Low_complexity Low_complexity 1 58 0 2 880 240 311 53 30 chr12 38671898 38672067 -82585463 + L1MC1 LINE L1 5576 5748 -760 2 880 1468 85 19 9 chr12 38672114 38672328 -82585202 - L1Md_F2 LINE L1 -13 6569 6354 2 880 695 308 119 41 chr12 38672346 38672860 -82584670 + L1MC1 LINE L1 5868 6421 -87 2 880 471 296 19 19 chr12 38673153 38673327 -82584203 - Lx6 LINE L1 -565 6895 6740 2 880 1187 293 35 12 chr12 38673469 38673811 -82583719 - MTD LTR MaLR -31 388 39 2 880 729 302 19 19 chr12 38673858 38674067 -82583463 + MTE2b LTR MaLR 169 377 -2 2 880 1522 321 50 66 chr12 38674079 38674700 -82582830 + MTEa-int LTR MaLR 962 1572 -8 2 880 388 346 26 92 chr12 38674707 38674936 -82582594 + MTEa LTR MaLR 5 218 -161 2 880 344 129 29 10 chr12 38675073 38675148 -82582382 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 880 189 0 0 0 chr12 38675148 38675169 -82582361 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 880 344 129 29 10 chr12 38675169 38675195 -82582335 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 880 723 44 0 0 chr12 38675195 38675286 -82582244 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 880 28 48 0 0 chr12 38675741 38675783 -82581747 + AT_rich Low_complexity Low_complexity 1 42 0 2 880 186 43 0 0 chr12 38675852 38675875 -82581655 + (TCC)n Simple_repeat Simple_repeat 2 24 0 2 880 23 54 0 0 chr12 38676776 38676813 -82580717 + AT_rich Low_complexity Low_complexity 1 37 0 2 880 508 368 13 29 chr12 38677327 38677565 -82579965 + B4A SINE B4 1 234 -58 2 880 2946 195 7 19 chr12 38678371 38678957 -82578573 - Lx2B LINE L1 -4 6996 6418 2 880 2067 150 0 3 chr12 38679314 38679641 -82577889 + ORR1A3 LTR MaLR 1 326 0 2 880 4965 192 96 4 chr12 38679642 38680780 -82576750 + ORR1A3-int LTR MaLR 2 1243 -720 2 880 3970 144 72 4 chr12 38681428 38682118 -82575412 + ORR1A3-int LTR MaLR 1227 1963 0 2 880 1553 144 133 0 chr12 38682122 38682400 -82575130 + ORR1A3 LTR MaLR 5 319 -8 2 880 284 56 0 0 chr12 38683525 38683561 -82573969 - U2 snRNA snRNA -152 36 1 2 880 210 162 0 0 chr12 38683887 38683924 -82573606 + A-rich Low_complexity Low_complexity 1 37 0 2 880 2768 261 89 78 chr12 38684536 38686305 -82571225 - Lx5 LINE L1 -2 7048 5293 2 880 755 387 7 24 chr12 38686490 38686781 -82570749 + B4A SINE B4 2 287 -5 2 880 902 90 96 22 chr12 38686946 38687082 -82570448 + B1_Mus2 SINE Alu 2 147 0 2 880 265 189 27 13 chr12 38687490 38687565 -82569965 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 880 414 0 0 0 chr12 38687570 38687616 -82569914 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 880 986 144 11 0 chr12 38688042 38688216 -82569314 + CT-rich Low_complexity Low_complexity 4 179 0 2 880 738 109 0 0 chr12 38688217 38688327 -82569203 + (TTC)n Simple_repeat Simple_repeat 1 110 0 2 880 30918 122 27 25 chr12 38688334 38694663 -82562867 - L1_Mus1 LINE L1 -1 6566 224 2 880 2378 176 48 58 chr12 38694951 38695452 -82562078 - RMER15 LTR ERVL -67 508 13 2 880 374 278 120 0 chr12 38695777 38695885 -82561645 - B1_Mus1 SINE Alu -27 121 1 2 880 24 0 0 0 chr12 38696116 38696140 -82561390 + AT_rich Low_complexity Low_complexity 1 24 0 2 880 605 259 20 13 chr12 38696148 38696297 -82561233 + RSINE1 SINE B4 16 165 0 2 880 381 22 0 0 chr12 38696353 38696399 -82561131 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 880 23 54 0 0 chr12 38697465 38697502 -82560028 + AT_rich Low_complexity Low_complexity 1 37 0 2 880 477 0 0 0 chr12 38697577 38697630 -82559900 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 880 187 133 0 0 chr12 38698931 38698961 -82558569 - MIRc SINE MIR -141 127 98 2 880 300 241 0 46 chr12 38699340 38699427 -82558103 - MLT1A1 LTR MaLR -3 405 323 2 880 24 32 0 0 chr12 38699634 38699665 -82557865 + AT_rich Low_complexity Low_complexity 1 31 0 2 880 438 356 49 0 chr12 38699926 38700089 -82557441 + LTR33 LTR ERVL 335 505 -10 2 880 277 55 55 18 chr12 38700277 38700332 -82557198 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 2 880 568 235 108 57 chr12 38700337 38700513 -82557017 - Lx8 LINE L1 -1068 6405 6221 2 880 395 335 57 52 chr12 38700641 38700833 -82556697 + Lx8 LINE L1 6581 6773 -700 2 880 303 28 0 0 chr12 38701111 38701147 -82556383 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 880 552 30 0 0 chr12 38701147 38701212 -82556318 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 880 1413 138 0 0 chr12 38701669 38701886 -82555644 - Lx LINE L1 -165 6489 6273 2 880 288 250 23 45 chr12 38701886 38701974 -82555556 - MTC LTR MaLR -335 86 1 2 880 4983 165 25 16 chr12 38702128 38703075 -82554455 - Lx2B LINE L1 0 7000 6045 2 880 701 151 0 0 chr12 38703146 38703265 -82554265 - L1_Mur2 LINE L1 -982 4895 4777 3 880 2969 133 21 92 chr12 38703266 38703895 -82553635 + L1_Mur2 LINE L1 3852 4435 -1442 3 880 326 96 19 0 chr12 38703886 38703938 -82553592 - L1_Mur2 LINE L1 -1099 4778 4726 3 880 279 68 33 17 chr12 38703938 38703998 -82553532 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 3 880 1073 95 0 0 chr12 38704001 38704148 -82553382 - B1_Mus1 SINE Alu 0 148 2 3 880 1489 133 46 39 chr12 38704149 38704431 -82553099 - L1_Mur2 LINE L1 -1138 4739 4456 3 880 621 228 107 12 chr12 38704442 38704611 -82552919 + Lx5 LINE L1 6858 7042 -8 3 880 216 86 0 0 chr12 38707318 38707353 -82550177 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 880 1068 82 0 0 chr12 38707356 38707502 -82550028 - B1_Mm SINE Alu 0 147 2 3 880 480 18 0 0 chr12 38707929 38707986 -82549544 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 880 521 135 30 15 chr12 38708758 38708893 -82548637 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 3 880 2137 133 74 86 chr12 38710159 38710324 -82547206 - Lx2A LINE L1 -2 7006 6878 3 880 225 0 0 0 chr12 38710324 38710349 -82547181 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 3 880 2137 133 74 86 chr12 38710349 38710627 -82546903 - Lx2A LINE L1 -131 6877 6570 3 880 675 72 27 0 chr12 38710756 38710867 -82546663 + (GA)n Simple_repeat Simple_repeat 1 114 0 3 880 602 317 33 9 chr12 38711688 38711898 -82545632 - ID_B1 SINE B4 -8 216 2 3 880 262 264 103 9 chr12 38712357 38712464 -82545066 - MTEb LTR MaLR -12 367 251 3 880 1038 80 23 0 chr12 38712480 38712655 -82544875 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 3 880 243 328 0 0 chr12 38714139 38714206 -82543324 + ID4_ SINE ID 2 68 -15 3 880 204 40 0 0 chr12 38714526 38714551 -82542979 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 880 24 53 0 0 chr12 38715534 38715572 -82541958 + AT_rich Low_complexity Low_complexity 1 38 0 3 880 569 49 0 12 chr12 38715837 38715919 -82541611 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 3 880 28 0 0 0 chr12 38717109 38717137 -82540393 + AT_rich Low_complexity Low_complexity 1 28 0 3 880 183 100 0 0 chr12 38717147 38717177 -82540353 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 3 880 1592 198 7 0 chr12 38717654 38717937 -82539593 - MTC LTR MaLR -8 413 129 3 880 279 362 74 0 chr12 38718477 38718626 -82538904 + MIRc SINE MIR 95 254 -14 3 880 669 360 106 16 chr12 38718933 38719357 -82538173 - LTR40b LTR ERVL 0 462 1 3 880 587 14 14 0 chr12 38719702 38719774 -82537756 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 880 342 0 0 0 chr12 38720344 38720382 -82537148 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 880 286 80 20 20 chr12 38720519 38720570 -82536960 + (TCTCC)n Simple_repeat Simple_repeat 3 53 0 3 880 4184 259 39 41 chr12 38720597 38722165 -82535365 - RMER1A Other Other -6 1024 1 3 880 21 36 0 0 chr12 38722982 38723010 -82534520 + AT_rich Low_complexity Low_complexity 1 28 0 3 880 36 0 0 0 chr12 38724060 38724096 -82533434 + AT_rich Low_complexity Low_complexity 1 36 0 3 880 477 62 0 0 chr12 38724202 38724267 -82533263 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 880 2229 275 86 29 chr12 38724301 38724668 -82532862 - RCHARR1 DNA MER1_type -47 927 517 3 880 2345 54 35 0 chr12 38724668 38724983 -82532547 - L1_Mus3 LINE L1 -2 6636 6311 3 880 2229 275 86 29 chr12 38724983 38725451 -82532079 - RCHARR1 DNA MER1_type -458 516 44 3 880 226 287 53 84 chr12 38725641 38725736 -82531794 + ORR1B1-int LTR MaLR 1072 1163 -346 3 880 791 21 10 0 chr12 38725850 38725947 -82531583 + (TC)n Simple_repeat Simple_repeat 1 98 0 3 880 344 77 19 0 chr12 38726327 38726379 -82531151 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 880 22 88 0 0 chr12 38726437 38726494 -82531036 + AT_rich Low_complexity Low_complexity 1 57 0 3 880 847 314 70 56 chr12 38726813 38727187 -82530343 + MTE2b LTR MaLR 1 379 0 3 880 203 306 14 0 chr12 38727219 38727291 -82530239 + GA-rich Low_complexity Low_complexity 1 73 0 3 880 345 18 52 17 chr12 38727407 38727465 -82530065 + (CAAAA)n Simple_repeat Simple_repeat 3 62 0 3 880 1827 119 3 3 chr12 38728430 38728717 -82528813 - L1_Mus4 LINE L1 -708 5928 5642 3 880 369 313 54 29 chr12 38729116 38729320 -82528210 + L2 LINE L2 2272 2480 -939 3 880 8239 170 11 68 chr12 38729683 38731533 -82525997 + L1_Mur1 LINE L1 2609 4353 -1533 3 880 1452 177 21 18 chr12 38731535 38731817 -82525713 + Lx LINE L1 4917 5199 -684 3 880 6667 132 27 19 chr12 38731817 38732144 -82525386 + Lx LINE L1 5529 5858 -796 3 880 372 22 0 0 chr12 38732144 38732189 -82525341 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 880 6667 121 31 24 chr12 38732189 38732979 -82524551 + Lx LINE L1 5859 6654 0 3 880 4616 156 8 2 chr12 38733346 38734132 -82523398 - L1_Mus4 LINE L1 -285 5598 4809 3 880 6128 117 61 3 chr12 38734130 38735098 -82522432 + L1_Mus4 LINE L1 5613 6636 0 3 880 1801 162 23 0 chr12 38735568 38735621 -82521909 + RMER6A LTR ERVK 1 56 -700 3 880 333 0 0 0 chr12 38735621 38735658 -82521872 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 880 1801 162 23 0 chr12 38735658 38735913 -82521617 + RMER6A LTR ERVK 57 315 -441 3 880 191 355 48 9 chr12 38736311 38736420 -82521110 - MIRc SINE MIR -115 161 46 3 880 399 232 26 9 chr12 38736445 38736558 -82520972 - Lx6 LINE L1 -30 7430 7316 3 880 1951 212 62 11 chr12 38736719 38737168 -82520362 + RMER6A LTR ERVK 283 754 -2 3 880 397 325 0 17 chr12 38737672 38737791 -82519739 + B3A SINE B2 1 117 -81 3 880 540 56 0 0 chr12 38737834 38737906 -82519624 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 880 492 148 0 0 chr12 38738424 38738532 -82518998 + (TC)n Simple_repeat Simple_repeat 1 108 0 3 880 1209 253 31 85 chr12 38738776 38739165 -82518365 + ORR1D1 LTR MaLR 1 368 -6 3 880 462 300 14 14 chr12 38739453 38739595 -82517935 - B1F SINE Alu -7 142 1 3 880 381 267 25 76 chr12 38739595 38739611 -82517919 - B4A SINE B4 -72 220 71 3 880 257 333 0 0 chr12 38739614 38739695 -82517835 - ID4 SINE ID -2 81 1 3 880 502 72 0 0 chr12 38739940 38740009 -82517521 - L1_Mus2 LINE L1 -5 6561 6493 3 880 5901 187 66 18 chr12 38740019 38741220 -82516310 - Lx2B LINE L1 -28 6972 5714 3 880 3161 154 30 2 chr12 38741219 38741780 -82515750 + L1_Mur2 LINE L1 3838 4414 -1463 3 880 321 131 0 0 chr12 38743092 38743153 -82514377 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 880 21 57 0 0 chr12 38743312 38743347 -82514183 + AT_rich Low_complexity Low_complexity 1 35 0 3 880 327 104 0 0 chr12 38743576 38743624 -82513906 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 880 2641 66 0 39 chr12 38748034 38748396 -82509134 - L1_Mus1 LINE L1 -1 6566 6219 3 880 2138 71 0 0 chr12 38748396 38748671 -82508859 + L1_Mus1 LINE L1 5685 5959 -608 3 880 4331 79 9 5 chr12 38750167 38750778 -82506752 - L1Md_F2 LINE L1 0 6582 5990 3 880 6857 58 0 1 chr12 38750778 38751745 -82505785 + L1Md_F2 LINE L1 5003 5968 -614 3 880 1499 284 22 41 chr12 38752004 38752407 -82505123 + Lx6 LINE L1 6923 7317 -143 3 880 218 32 0 31 chr12 38752407 38752439 -82505091 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 880 1499 284 22 41 chr12 38752439 38752494 -82505036 + Lx6 LINE L1 7318 7371 -89 3 880 2408 319 78 36 chr12 38754317 38755272 -82502258 - Lx8 LINE L1 -357 7116 6134 3 880 3850 148 49 38 chr12 38755272 38755965 -82501565 - Lx2 LINE L1 -1 6996 6296 3 880 2408 302 75 29 chr12 38755965 38756524 -82501006 - Lx8 LINE L1 -1340 6133 5530 3 880 282 285 5 141 chr12 38756588 38756663 -82500867 - Lx8 LINE L1 -360 5520 5450 3 880 279 0 0 0 chr12 38756663 38756694 -82500836 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 880 282 285 5 141 chr12 38756694 38756810 -82500720 - Lx8 LINE L1 -431 5449 5355 3 880 382 172 0 57 chr12 38756821 38756944 -82500586 + CT-rich Low_complexity Low_complexity 1 116 0 3 880 6091 29 1 0 chr12 38756951 38757668 -82499862 - L1Md_A LINE L1 -3 6579 5862 3 880 12370 24 0 1 chr12 38757669 38759114 -82498416 + L1Md_A LINE L1 4416 5859 -24 3 880 6737 135 37 23 chr12 38759123 38760779 -82496751 - L1_Mus4 LINE L1 -6 6630 4928 3 880 2109 166 96 0 chr12 38760826 38761224 -82496306 - Lx2A LINE L1 -2 7006 6571 3 880 510 17 0 0 chr12 38761644 38761703 -82495827 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 880 270 0 0 0 chr12 38763333 38763363 -82494167 + (T)n Simple_repeat Simple_repeat 1 30 0 3 880 38821 49 4 9 chr12 38764494 38770790 -82486740 - L1Md_T LINE L1 0 6582 307 3 880 22 0 0 0 chr12 38770804 38770826 -82486704 + AT_rich Low_complexity Low_complexity 1 22 0 3 880 189 74 0 0 chr12 38770858 38770885 -82486645 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 880 187 279 67 34 chr12 38770942 38771031 -82486499 + L2 LINE L2 817 908 -2511 3 880 572 248 16 8 chr12 38771477 38771603 -82485927 - B1_Mur3 SINE Alu -7 142 16 3 880 253 295 21 93 chr12 38771516 38771613 -82485917 - MT2B LTR ERVL -344 257 168 3 880 1175 100 0 12 chr12 38771660 38771832 -82485698 + B2_Mm2 SINE B2 1 170 -25 3 880 21 0 0 0 chr12 38771854 38771875 -82485655 + AT_rich Low_complexity Low_complexity 1 21 0 3 880 6617 99 2 1 chr12 38771875 38772803 -82484727 + L1_Mus4 LINE L1 5702 6630 -6 3 880 225 65 0 0 chr12 38773676 38773707 -82483823 + (T)n Simple_repeat Simple_repeat 1 31 0 3 880 31211 38 1 0 chr12 38774194 38780474 -82477056 + L1Md_T LINE L1 1 5589 -297 3 880 8963 6 0 0 chr12 38780474 38781534 -82475996 + L1Md_T LINE L1 5590 6585 0 3 880 21 0 0 0 chr12 38781860 38781881 -82475649 + AT_rich Low_complexity Low_complexity 1 21 0 3 880 3252 152 11 16 chr12 38781881 38782441 -82475089 - Lx3B LINE L1 -4 6969 6413 3 880 1946 140 93 16 chr12 38784104 38784468 -82473062 - Lx2 LINE L1 0 6997 6606 3 880 276 307 73 73 chr12 38784926 38785091 -82472439 + MLT1C LTR MaLR 205 369 -98 3 880 261 174 43 0 chr12 38786023 38786092 -82471438 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 880 21 57 0 0 chr12 38786115 38786150 -82471380 + AT_rich Low_complexity Low_complexity 1 35 0 3 880 676 293 38 55 chr12 38786758 38787101 -82470429 - RLTR15 LTR ERVK -21 338 2 3 880 3741 213 23 27 chr12 38787174 38787891 -82469639 - MYSERV6-int LTR ERVK -54 8905 8189 3 880 1074 90 17 35 chr12 38787891 38788064 -82469466 - L1Md_F3 LINE L1 -2 6582 6413 3 880 3741 213 23 27 chr12 38788064 38788286 -82469244 - MYSERV6-int LTR ERVK -771 8188 7970 3 880 461 191 17 9 chr12 38788289 38788405 -82469125 - MYSERV-int LTR ERVK -1114 5436 5320 3 880 515 270 12 72 chr12 38788405 38788602 -82468928 - RMER4A LTR ERVK -35 550 254 3 880 833 289 46 67 chr12 38788605 38788976 -82468554 - MYSERV-int LTR ERVK -1424 5126 4764 3 880 1983 288 43 61 chr12 38789020 38790042 -82467488 - MYSERV-int LTR ERVK -1781 4769 3766 3 880 2794 176 9 24 chr12 38790047 38790593 -82466937 + RMER12 LTR ERVK 1 538 -784 4 880 1610 220 61 25 chr12 38790575 38790971 -82466559 - RMER4B LTR ERVK -103 482 73 4 880 270 0 0 0 chr12 38790994 38791024 -82466506 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 880 360 130 0 0 chr12 38792030 38792099 -82465431 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 880 22 0 0 0 chr12 38792208 38792230 -82465300 + AT_rich Low_complexity Low_complexity 1 22 0 4 880 459 313 30 48 chr12 38792366 38792661 -82464869 + B4A SINE B4 3 292 0 4 880 3783 212 92 28 chr12 38792754 38793847 -82463683 + Lx6 LINE L1 4510 5672 -208 4 880 698 257 5 32 chr12 38793858 38794014 -82463516 + Lx6 LINE L1 6341 6497 -963 4 880 2825 55 0 0 chr12 38794014 38794360 -82463170 - ORR1A1 LTR MaLR 0 346 1 4 880 698 257 5 32 chr12 38794360 38794388 -82463142 + Lx6 LINE L1 6498 6520 -940 4 880 2260 286 49 25 chr12 38794388 38795117 -82462413 + Lx6 LINE L1 6712 7458 -2 4 880 1001 103 13 0 chr12 38795388 38795544 -82461986 + (GGGA)n Simple_repeat Simple_repeat 3 160 0 4 880 3554 240 17 57 chr12 38795574 38795907 -82461623 - Lx7 LINE L1 -16 7680 7363 4 880 564 56 0 0 chr12 38795907 38795979 -82461551 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 880 396 0 0 0 chr12 38795980 38796024 -82461506 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 4 880 3554 240 17 57 chr12 38796024 38796665 -82460865 - Lx7 LINE L1 -334 7362 6743 4 880 746 169 12 72 chr12 38796683 38796849 -82460681 + URR1B DNA MER1_type 70 225 0 4 13 2501 230 81 3 chr12 38796851 38797418 -82460112 - Lx7 LINE L1 -941 6755 6145 4 881 387 0 0 0 chr12 38797936 38797979 -82459551 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 881 3645 60 0 0 chr12 38798086 38798658 -82458872 + L1Md_F2 LINE L1 5470 6041 -525 4 881 462 18 0 0 chr12 38799320 38799375 -82458155 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 881 4031 70 13 11 chr12 38799466 38800015 -82457515 + L1Md_F2 LINE L1 6032 6581 -1 4 881 23 0 0 0 chr12 38800048 38800071 -82457459 + AT_rich Low_complexity Low_complexity 1 23 0 4 881 35372 35 0 0 chr12 38801256 38806682 -82450848 + L1Md_T LINE L1 67 5589 -297 4 881 8913 9 0 0 chr12 38806682 38807678 -82449852 + L1Md_T LINE L1 5590 6585 0 4 881 455 343 38 109 chr12 38807853 38808118 -82449412 + B4A SINE B4 3 248 -44 4 881 335 311 223 32 chr12 38808189 38808723 -82448807 + L1MB5 LINE L1 5366 6001 -173 4 881 3213 26 39 0 chr12 38808924 38809305 -82448225 + MTA_Mm LTR MaLR 1 396 0 4 881 728 210 35 0 chr12 38809563 38809706 -82447824 - B1_Mus1 SINE Alu 0 148 1 4 881 237 204 0 0 chr12 38809771 38809815 -82447715 - B1_Mur2 SINE Alu -8 141 98 4 881 456 19 0 0 chr12 38810386 38810439 -82447091 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 881 207 100 0 0 chr12 38810439 38810468 -82447062 + (CATA)n Simple_repeat Simple_repeat 3 32 0 4 881 256 313 0 0 chr12 38810522 38810589 -82446941 + ID4_ SINE ID 5 71 -12 4 881 238 194 28 0 chr12 38810930 38811002 -82446528 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 4 881 314 308 42 28 chr12 38811785 38811891 -82445639 - PB1D7 SINE Alu 0 120 15 4 881 23 33 0 0 chr12 38812608 38812638 -82444892 + AT_rich Low_complexity Low_complexity 1 30 0 4 881 698 137 34 7 chr12 38813098 38813245 -82444285 - L1_Mus3 LINE L1 -5 6633 6483 4 881 24 0 0 0 chr12 38813282 38813306 -82444224 + AT_rich Low_complexity Low_complexity 1 24 0 4 881 30 59 0 0 chr12 38813401 38813452 -82444078 + AT_rich Low_complexity Low_complexity 1 51 0 4 881 213 335 47 83 chr12 38813835 38814027 -82443503 - MER5A DNA MER1_type 0 189 5 4 881 21 0 0 0 chr12 38814065 38814086 -82443444 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 792 319 75 15 chr12 38814795 38815062 -82442468 + B4A SINE B4 1 283 -9 4 881 864 272 69 43 chr12 38815092 38815376 -82442154 - ORR1D1 LTR MaLR -79 305 12 4 881 315 0 0 0 chr12 38815376 38815411 -82442119 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 881 2569 139 43 36 chr12 38816712 38817182 -82440348 - MT2C_Mm LTR ERVL -2 473 1 4 881 211 159 0 43 chr12 38818733 38818779 -82438751 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 881 4754 136 55 4 chr12 38819225 38820027 -82437503 + Lx2 LINE L1 6133 6975 -22 4 881 188 0 0 69 chr12 38820027 38820056 -82437474 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 4 881 243 176 0 19 chr12 38820117 38820169 -82437361 + (CCA)n Simple_repeat Simple_repeat 3 53 0 4 881 404 115 38 25 chr12 38820169 38820249 -82437281 + Lx5 LINE L1 2058 2138 -3739 4 881 9535 194 93 12 chr12 38820221 38824093 -82433437 + Lx5 LINE L1 2664 7050 0 4 881 21 71 0 0 chr12 38824755 38824797 -82432733 + AT_rich Low_complexity Low_complexity 1 42 0 4 881 444 19 0 0 chr12 38824959 38825012 -82432518 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 881 228 35 0 0 chr12 38825164 38825193 -82432337 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 881 250 203 31 8 chr12 38825194 38825323 -82432207 + (TA)n Simple_repeat Simple_repeat 1 132 0 4 881 1801 131 44 13 chr12 38826182 38826499 -82431031 - Lx LINE L1 0 6654 6328 4 881 780 133 0 53 chr12 38827799 38827950 -82429580 - Lx LINE L1 -3 6651 6509 4 881 5766 142 78 21 chr12 38827950 38828620 -82428910 - Lx3A LINE L1 -687 6294 5623 4 881 3768 141 7 18 chr12 38828620 38829232 -82428298 - Lx LINE L1 0 6654 6050 4 881 5766 142 8 68 chr12 38829232 38829580 -82427950 - Lx3A LINE L1 -263 5623 5306 4 881 1176 54 0 0 chr12 38829580 38829727 -82427803 - B1_Mm SINE Alu 0 147 1 4 881 5766 142 8 68 chr12 38829727 38830189 -82427341 - Lx3A LINE L1 -581 5305 4837 4 881 1672 153 129 13 chr12 38830260 38830577 -82426953 + ORR1B1 LTR MaLR 41 394 0 4 881 809 193 168 24 chr12 38830697 38830839 -82426691 - Lx9 LINE L1 -1 7643 7460 4 881 213 39 0 0 chr12 38830839 38830865 -82426665 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 881 809 193 168 24 chr12 38830865 38831014 -82426516 - Lx9 LINE L1 -185 7459 7310 4 881 201 156 0 0 chr12 38831805 38831837 -82425693 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 881 402 151 0 0 chr12 38832048 38832121 -82425409 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 881 279 133 0 0 chr12 38832583 38832628 -82424902 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 881 533 52 13 0 chr12 38833372 38833449 -82424081 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 4 881 437 326 21 14 chr12 38834054 38834194 -82423336 + B4A SINE B4 141 281 -11 4 881 320 358 0 9 chr12 38834384 38834491 -82423039 - ID_B1 SINE B4 0 224 119 4 881 279 0 0 0 chr12 38835017 38835048 -82422482 + (TAA)n Simple_repeat Simple_repeat 3 33 0 4 881 574 333 102 12 chr12 38835625 38835871 -82421659 + B4A SINE B4 1 268 -24 4 881 306 0 0 0 chr12 38835884 38835918 -82421612 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 881 231 255 20 0 chr12 38835929 38835980 -82421550 + ID4 SINE ID 21 72 -11 4 881 189 0 0 0 chr12 38836478 38836499 -82421031 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 881 317 278 87 0 chr12 38837057 38837172 -82420358 + L1MC2 LINE L1 5798 5922 -422 4 881 1738 219 36 17 chr12 38837247 38837660 -82419870 - MTC LTR MaLR 0 421 1 4 881 396 0 0 0 chr12 38837773 38837817 -82419713 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 881 315 330 54 34 chr12 38838176 38838380 -82419150 + L1MB8 LINE L1 5958 6165 -13 4 881 185 0 40 0 chr12 38839043 38839068 -82418462 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 881 387 0 0 0 chr12 38839172 38839215 -82418315 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 881 303 224 128 12 chr12 38839357 38839443 -82418087 + MIRc SINE MIR 129 224 -44 4 881 662 136 8 0 chr12 38840151 38840283 -82417247 + (TAGA)n Simple_repeat Simple_repeat 4 136 0 4 881 495 0 0 0 chr12 38840661 38840716 -82416814 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 881 338 91 18 0 chr12 38840957 38841012 -82416518 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 881 212 0 36 0 chr12 38841371 38841399 -82416131 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 881 24 32 0 0 chr12 38842338 38842369 -82415161 + AT_rich Low_complexity Low_complexity 1 31 0 4 881 423 0 0 0 chr12 38843391 38843438 -82414092 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 881 3077 65 18 0 chr12 38843891 38844291 -82413239 - L1_Mus1 LINE L1 0 6567 6161 4 881 180 250 98 16 chr12 38845347 38845408 -82412122 - L3 LINE CR1 -3341 1148 1083 4 881 21 0 0 0 chr12 38845821 38845842 -82411688 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 261 119 0 0 chr12 38846482 38846524 -82411006 + (A)n Simple_repeat Simple_repeat 1 42 0 4 881 225 119 0 0 chr12 38847085 38847127 -82410403 + (A)n Simple_repeat Simple_repeat 1 42 0 4 881 329 344 48 8 chr12 38848197 38848323 -82409207 - RSINE1 SINE B4 -22 143 13 4 881 25 65 0 0 chr12 38848872 38848918 -82408612 + AT_rich Low_complexity Low_complexity 1 46 0 4 881 1177 106 36 26 chr12 38849017 38849210 -82408320 + B2_Mm2 SINE B2 1 195 0 4 881 304 268 172 21 chr12 38849372 38849517 -82408013 - MIRc SINE MIR -54 214 48 4 881 42 36 0 0 chr12 38849897 38849953 -82407577 + AT_rich Low_complexity Low_complexity 1 56 0 4 881 522 0 0 0 chr12 38850401 38850459 -82407071 + (T)n Simple_repeat Simple_repeat 1 58 0 4 881 348 127 0 0 chr12 38850658 38850713 -82406817 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 4 881 190 380 81 19 chr12 38851180 38851341 -82406189 - MIRb SINE MIR -73 195 25 4 881 21 0 0 0 chr12 38851445 38851466 -82406064 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 4450 56 2 6 chr12 38854552 38855277 -82402253 - L1Md_F2 LINE L1 -545 6037 5316 4 881 3870 72 10 4 chr12 38855277 38855790 -82401740 + L1Md_F2 LINE L1 6065 6580 -2 4 881 603 74 0 0 chr12 38856009 38856090 -82401440 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 4 881 347 113 16 0 chr12 38857915 38857977 -82399553 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 4 881 249 33 0 0 chr12 38858680 38858710 -82398820 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 881 450 94 0 0 chr12 38858710 38858773 -82398757 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 881 295 222 0 73 chr12 38858830 38858898 -82398632 - Lx8 LINE L1 -178 7295 7233 4 881 1186 218 0 5 chr12 38858920 38859141 -82398389 + URR1B DNA MER1_type 6 225 0 4 881 1276 277 88 31 chr12 38859145 38859589 -82397941 - Lx8 LINE L1 -260 7213 6745 4 881 23 0 0 0 chr12 38861300 38861323 -82396207 + AT_rich Low_complexity Low_complexity 1 23 0 5 881 245 293 109 29 chr12 38861928 38862065 -82395465 - LTR40b LTR ERVL 0 462 315 5 881 34 0 0 0 chr12 38862514 38862548 -82394982 + AT_rich Low_complexity Low_complexity 1 34 0 5 881 519 92 0 0 chr12 38862643 38862730 -82394800 + (T)n Simple_repeat Simple_repeat 1 87 0 5 881 267 340 28 0 chr12 38863639 38863745 -82393785 - B4A SINE B4 -6 286 178 5 881 1649 62 0 0 chr12 38864008 38864298 -82393232 - L1_Mus1 LINE L1 0 6567 6357 5 881 1158 75 0 0 chr12 38864532 38864678 -82392852 + B1_Mm SINE Alu 1 146 -1 5 881 21 71 0 0 chr12 38864678 38864720 -82392810 + AT_rich Low_complexity Low_complexity 1 42 0 5 881 228 169 0 157 chr12 38864760 38864830 -82392700 + RMER13A LTR ERVK 140 198 -662 5 881 480 18 0 0 chr12 38866922 38866979 -82390551 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 881 228 143 0 0 chr12 38867310 38867352 -82390178 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5 881 21 0 0 0 chr12 38867570 38867591 -82389939 + AT_rich Low_complexity Low_complexity 1 21 0 5 881 370 312 44 38 chr12 38867959 38868142 -82389388 + MIR SINE MIR 69 252 -10 5 881 230 295 71 62 chr12 38868799 38868911 -82388619 + ORR1B1-int LTR MaLR 871 983 -526 5 881 863 35 26 0 chr12 38869540 38869653 -82387877 + (CAAAA)n Simple_repeat Simple_repeat 2 117 0 5 881 405 0 0 0 chr12 38870273 38870318 -82387212 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 881 745 336 75 43 chr12 38872364 38872803 -82384727 - MLT1C LTR MaLR -8 459 7 5 881 35 63 0 0 chr12 38875286 38875349 -82382181 + AT_rich Low_complexity Low_complexity 1 63 0 5 881 368 20 20 0 chr12 38877917 38877966 -82379564 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 881 28 0 0 0 chr12 38878573 38878601 -82378929 + AT_rich Low_complexity Low_complexity 1 28 0 5 881 216 0 0 0 chr12 38878830 38878854 -82378676 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 881 324 0 0 0 chr12 38880487 38880523 -82377007 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 881 1155 239 144 42 chr12 38883020 38883267 -82374263 + MTD LTR MaLR 10 304 -115 5 881 2887 26 0 0 chr12 38883267 38883696 -82373834 - L1Md_F2 LINE L1 0 6582 6231 5 881 1155 239 144 42 chr12 38883696 38883800 -82373730 + MTD LTR MaLR 305 399 -20 5 881 549 164 46 15 chr12 38884012 38884142 -82373388 - Lx2B LINE L1 0 7000 6867 5 881 1701 159 7 0 chr12 38884145 38884421 -82373109 + Lx2B LINE L1 6554 6831 -169 5 881 1445 60 0 5 chr12 38884593 38884794 -82372736 - L1Md_F2 LINE L1 -3 6579 6380 5 881 22 0 0 0 chr12 38885289 38885311 -82372219 + AT_rich Low_complexity Low_complexity 1 22 0 5 881 611 196 122 0 chr12 38887176 38887365 -82370165 - Lx9 LINE L1 -4 7640 7429 5 881 503 335 45 24 chr12 38887386 38887621 -82369909 - B4 SINE B4 -55 237 4 5 881 489 34 0 0 chr12 38887743 38887802 -82369728 + (GGA)n Simple_repeat Simple_repeat 3 61 0 5 881 22 94 0 0 chr12 38887873 38887937 -82369593 + AT_rich Low_complexity Low_complexity 1 64 0 5 881 203 132 0 36 chr12 38888518 38888573 -82368957 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 5 881 180 0 0 0 chr12 38888671 38888691 -82368839 + (CAA)n Simple_repeat Simple_repeat 1 20 0 5 881 315 105 0 0 chr12 38889930 38889987 -82367543 + (T)n Simple_repeat Simple_repeat 1 57 0 5 881 22 0 0 0 chr12 38890392 38890414 -82367116 + AT_rich Low_complexity Low_complexity 1 22 0 5 881 1164 62 0 24 chr12 38890460 38890624 -82366906 - L1Md_F2 LINE L1 -11 6571 6412 5 881 483 18 0 0 chr12 38891360 38891416 -82366114 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 5 881 393 22 0 0 chr12 38891743 38891789 -82365741 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 881 502 216 0 50 chr12 38891896 38892037 -82365493 + Lx4A LINE L1 6916 7049 -9 5 881 1107 94 9 5 chr12 38892395 38892611 -82364919 + (TTC)n Simple_repeat Simple_repeat 1 217 0 5 881 1272 218 45 45 chr12 38892639 38892971 -82364559 + Lx7 LINE L1 7365 7696 0 5 881 1267 143 43 4 chr12 38893988 38894220 -82363310 - Lx3_Mus LINE L1 -14 6995 6755 5 881 847 205 0 6 chr12 38894239 38894401 -82363129 - Lx5 LINE L1 -672 6378 6218 5 881 7892 193 35 43 chr12 38894400 38896292 -82361238 - L1_Mur2 LINE L1 -561 5316 3448 5 881 21 0 0 0 chr12 38896639 38896660 -82360870 + AT_rich Low_complexity Low_complexity 1 21 0 5 881 496 296 32 65 chr12 38896674 38896891 -82360639 + B3 SINE B2 1 210 -6 5 881 202 239 0 0 chr12 38897649 38897695 -82359835 + T-rich Low_complexity Low_complexity 1 46 0 5 881 206 32 0 31 chr12 38898794 38898826 -82358704 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 5 881 2592 112 28 19 chr12 38899681 38900107 -82357423 - Lx LINE L1 -2 6652 6223 5 881 537 16 0 0 chr12 38900107 38900169 -82357361 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 881 25 51 0 0 chr12 38900271 38900310 -82357220 + AT_rich Low_complexity Low_complexity 1 39 0 5 881 26 30 0 0 chr12 38901072 38901105 -82356425 + AT_rich Low_complexity Low_complexity 1 33 0 5 881 44 35 0 0 chr12 38901318 38901376 -82356154 + AT_rich Low_complexity Low_complexity 1 58 0 5 881 186 167 0 0 chr12 38901615 38901651 -82355879 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 881 22 0 0 0 chr12 38901816 38901838 -82355692 + AT_rich Low_complexity Low_complexity 1 22 0 5 881 583 241 0 0 chr12 38903693 38903809 -82353721 + B1_Mus1 SINE Alu 1 116 -32 5 881 585 42 0 0 chr12 38903810 38903882 -82353648 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 881 180 77 0 0 chr12 38903897 38903923 -82353607 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 881 1481 69 91 18 chr12 38904269 38904490 -82353040 + L1Md_F2 LINE L1 6334 6570 -12 5 881 2889 222 88 21 chr12 38905238 38906040 -82351490 + Lx9 LINE L1 6783 7638 -6 5 881 284 299 23 11 chr12 38906364 38906452 -82351078 + GA-rich Low_complexity Low_complexity 4 92 0 5 881 393 117 0 0 chr12 38907800 38907860 -82349670 + (T)n Simple_repeat Simple_repeat 1 60 0 5 881 369 0 0 0 chr12 38908223 38908264 -82349266 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 881 336 48 0 0 chr12 38908272 38908314 -82349216 + (CTTAT)n Simple_repeat Simple_repeat 4 45 0 5 881 405 0 0 0 chr12 38908535 38908580 -82348950 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 881 992 58 0 7 chr12 38908679 38908819 -82348711 - L1Md_T LINE L1 -1 6581 6443 5 881 416 308 27 34 chr12 38908928 38909076 -82348454 + B4A SINE B4 2 148 -144 5 881 1928 168 27 15 chr12 38909097 38909496 -82348034 - Lx4B LINE L1 -55 7003 6590 5 881 208 266 0 28 chr12 38909599 38909742 -82347788 + (CATA)n Simple_repeat Simple_repeat 4 142 0 5 881 28 61 0 0 chr12 38909776 38909825 -82347705 + AT_rich Low_complexity Low_complexity 1 49 0 5 881 1111 78 0 0 chr12 38911050 38911191 -82346339 + B1_Mus1 SINE Alu 3 143 -5 5 881 24 0 0 0 chr12 38911191 38911215 -82346315 + AT_rich Low_complexity Low_complexity 1 24 0 5 881 23 68 0 0 chr12 38912075 38912119 -82345411 + AT_rich Low_complexity Low_complexity 1 44 0 5 881 1086 301 88 42 chr12 38912416 38913208 -82344322 - L1MA6 LINE L1 -79 6221 5389 5 881 280 43 43 0 chr12 38913208 38913254 -82344276 + (TTG)n Simple_repeat Simple_repeat 2 49 0 5 881 1086 284 103 11 chr12 38913254 38913439 -82344091 - L1MA6 LINE L1 -912 5388 5184 5 881 296 314 127 11 chr12 38913453 38913720 -82343810 + L1M2 LINE L1 3886 4183 -1960 5 881 957 53 8 0 chr12 38913819 38913952 -82343578 + L1_Mus2 LINE L1 6433 6566 0 5 881 339 332 143 31 chr12 38914124 38914804 -82342726 + L1M2 LINE L1 4371 5126 -1017 5 881 609 291 21 47 chr12 38914837 38915028 -82342502 + 7SK RNA RNA 57 242 -89 5 881 1031 84 7 14 chr12 38915871 38916003 -82341527 + B1_Mus2 SINE Alu 2 134 -13 5 881 561 12 49 0 chr12 38916003 38916084 -82341446 + (CAAAA)n Simple_repeat Simple_repeat 1 85 0 5 881 1031 84 7 14 chr12 38916084 38916096 -82341434 + B1_Mus2 SINE Alu 135 145 -2 5 881 21 0 0 0 chr12 38916340 38916361 -82341169 + AT_rich Low_complexity Low_complexity 1 21 0 5 881 237 151 0 0 chr12 38916953 38917006 -82340524 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 881 450 214 0 0 chr12 38917044 38917184 -82340346 + (CA)n Simple_repeat Simple_repeat 1 140 0 5 881 339 320 1 1 chr12 38917860 38917969 -82339561 - Lx7 LINE L1 -2001 5695 5569 5 881 207 0 0 0 chr12 38917969 38917992 -82339538 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 881 185 198 44 0 chr12 38918063 38918154 -82339376 + (TA)n Simple_repeat Simple_repeat 2 96 0 5 881 21 95 0 0 chr12 38918174 38918237 -82339293 + AT_rich Low_complexity Low_complexity 1 63 0 5 881 252 0 0 0 chr12 38918351 38918379 -82339151 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 881 4906 41 15 7 chr12 38919557 38920166 -82337364 - L1Md_F2 LINE L1 -11 6571 5958 5 881 25 65 0 0 chr12 38920289 38920335 -82337195 + AT_rich Low_complexity Low_complexity 1 46 0 5 881 247 305 11 0 chr12 38921247 38921342 -82336188 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 5 881 909 247 92 41 chr12 38921471 38921766 -82335764 + Lx9 LINE L1 7127 7436 -208 5 881 313 191 11 33 chr12 38921754 38921846 -82335684 + Lx9 LINE L1 7547 7636 -8 5 881 430 311 57 39 chr12 38922078 38922359 -82335171 + BLACKJACK DNA AcHobo 1311 1596 -1348 5 881 351 44 0 0 chr12 38922822 38922867 -82334663 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 881 245 29 29 0 chr12 38922867 38922901 -82334629 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 881 995 32 0 0 chr12 38922909 38923034 -82334496 - B1_Mm SINE Alu -2 145 21 5 881 2217 169 75 20 chr12 38923161 38923615 -82333915 + Lx2 LINE L1 6498 6976 -21 5 110 33208 67 5 8 chr12 38923616 38928594 -82328936 + L1Md_F3 LINE L1 631 5586 -297 5 882 7946 40 9 0 chr12 38928594 38929569 -82327961 + L1Md_F3 LINE L1 5587 6570 -14 5 882 180 131 57 45 chr12 38929584 38929672 -82327858 + (TAAA)n Simple_repeat Simple_repeat 4 92 0 5 882 252 0 0 0 chr12 38929966 38929994 -82327536 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 882 453 36 0 0 chr12 38930094 38930149 -82327381 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 5 882 25 31 0 0 chr12 38930907 38930939 -82326591 + AT_rich Low_complexity Low_complexity 1 32 0 6 882 248 306 14 14 chr12 38930963 38931036 -82326494 + B4A SINE B4 3 75 -217 6 882 339 298 43 0 chr12 38931152 38931246 -82326284 + B2_Mm2 SINE B2 5 102 -93 6 882 6796 189 72 33 chr12 38931458 38932005 -82325525 - L1_Mus3 LINE L1 -3 6978 6389 6 882 423 0 0 0 chr12 38932005 38932052 -82325478 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 882 6796 79 27 2 chr12 38932052 38932745 -82324785 - L1_Mus3 LINE L1 -250 6388 5676 6 882 5875 123 6 22 chr12 38932728 38933668 -82323862 + L1_Mus3 LINE L1 4747 5671 -212 6 882 387 338 53 15 chr12 38934178 38934310 -82323220 + B1F1 SINE Alu 9 145 -4 6 882 22 56 0 0 chr12 38934711 38934747 -82322783 + AT_rich Low_complexity Low_complexity 1 36 0 6 882 1064 72 0 7 chr12 38934773 38934912 -82322618 + B1_Mus1 SINE Alu 1 138 -10 6 882 250 271 12 0 chr12 38935192 38935277 -82322253 - L1MB1 LINE L1 -50 6118 6033 6 882 220 182 36 0 chr12 38935411 38935466 -82322064 + (TAA)n Simple_repeat Simple_repeat 1 57 0 6 882 315 0 0 0 chr12 38935485 38935520 -82322010 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 882 321 212 80 10 chr12 38935605 38935705 -82321825 - L1MC4a LINE L1 -282 7600 7494 6 882 414 159 0 0 chr12 38935887 38935994 -82321536 + GA-rich Low_complexity Low_complexity 2 108 0 6 882 287 85 21 0 chr12 38936369 38936416 -82321114 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 882 285 75 0 0 chr12 38936424 38936464 -82321066 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 882 5868 155 24 20 chr12 38937028 38938126 -82319404 - Lx2 LINE L1 -2 6995 5894 6 882 23 0 0 0 chr12 38938781 38938804 -82318726 + AT_rich Low_complexity Low_complexity 1 23 0 6 882 777 31 0 0 chr12 38939029 38939125 -82318405 + (GA)n Simple_repeat Simple_repeat 2 97 0 6 882 343 224 22 56 chr12 38939361 38939451 -82318079 - B4 SINE B4 -203 89 3 6 882 362 324 98 7 chr12 38939761 38939904 -82317626 + B3A SINE B2 2 157 -41 6 882 182 208 0 19 chr12 38939911 38939965 -82317565 + CT-rich Low_complexity Low_complexity 2 54 0 6 882 23 33 0 0 chr12 38940626 38940656 -82316874 + AT_rich Low_complexity Low_complexity 1 30 0 6 882 261 146 0 0 chr12 38940694 38940742 -82316788 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 882 21 57 0 0 chr12 38941187 38941222 -82316308 + AT_rich Low_complexity Low_complexity 1 35 0 6 882 374 212 37 12 chr12 38941809 38941890 -82315640 + HAL1-3A_ME LINE L1 1976 2058 -800 6 882 288 0 0 0 chr12 38942282 38942314 -82315216 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 882 654 142 35 0 chr12 38943259 38943372 -82314158 - Lx2 LINE L1 -116 6881 6765 6 882 3260 124 0 21 chr12 38943361 38943873 -82313657 - Lx2 LINE L1 -352 6645 6145 6 882 21 36 0 0 chr12 38944165 38944193 -82313337 + AT_rich Low_complexity Low_complexity 1 28 0 6 882 259 276 0 0 chr12 38944240 38944298 -82313232 - MER5A DNA MER1_type -21 168 111 6 882 239 360 11 11 chr12 38944244 38944334 -82313196 + MER5A DNA MER1_type 37 126 -63 6 882 21 0 0 0 chr12 38944355 38944376 -82313154 + AT_rich Low_complexity Low_complexity 1 21 0 6 882 1108 155 0 6 chr12 38945864 38946046 -82311484 - B2_Mm2 SINE B2 -14 181 1 6 882 2485 307 81 24 chr12 38946091 38947196 -82310334 - Lx8 LINE L1 -29 7444 6276 6 882 381 43 0 0 chr12 38947234 38947281 -82310249 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 882 384 269 104 0 chr12 38947610 38947744 -82309786 - Lx8 LINE L1 -676 6797 6650 6 882 31722 112 16 30 chr12 38947802 38949574 -82307956 - L1Md_F2 LINE L1 -2 6995 5288 6 882 4295 54 9 9 chr12 38949574 38950136 -82307394 - L1Md_F2 LINE L1 -4 6578 6017 6 882 31722 80 10 15 chr12 38950136 38954071 -82303459 - L1Md_F2 LINE L1 -596 5287 1364 6 882 688 301 5 15 chr12 38954856 38955062 -82302468 - B3 SINE B2 -11 205 2 6 882 5239 185 40 28 chr12 38955266 38956414 -82301116 - ORR1A3-int LTR MaLR -192 1771 718 6 882 586 177 34 116 chr12 38956373 38956520 -82301010 - MT2B LTR ERVL -314 287 153 6 882 1016 174 11 5 chr12 38956615 38956806 -82300724 + ORR1A4-int LTR MaLR 1772 1963 0 6 882 1422 134 87 45 chr12 38956806 38957072 -82300458 + ORR1A4 LTR MaLR 1 277 -52 6 882 30 69 0 0 chr12 38957286 38957344 -82300186 + AT_rich Low_complexity Low_complexity 1 58 0 6 882 241 279 65 16 chr12 38957975 38958099 -82299431 - L1M4 LINE L1 -341 5837 5708 6 882 305 293 34 8 chr12 38958335 38958452 -82299078 - Lx9 LINE L1 -1749 5895 5776 6 882 183 167 0 0 chr12 38958467 38958506 -82299024 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 882 222 37 0 0 chr12 38958506 38958533 -82298997 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 882 183 167 0 0 chr12 38958533 38958547 -82298983 + (TA)n Simple_repeat Simple_repeat 2 15 0 6 882 887 295 52 10 chr12 38958629 38958937 -82298593 - MTEa LTR MaLR 0 379 59 6 882 305 312 0 11 chr12 38958939 38959033 -82298497 - MTEa LTR MaLR -282 97 5 6 882 1203 298 61 52 chr12 38959037 38959694 -82297836 - MTEa-int LTR MaLR 0 1580 1052 6 882 305 318 26 156 chr12 38959745 38959991 -82297539 - MTEa LTR MaLR -42 337 121 6 882 22 35 0 0 chr12 38961322 38961351 -82296179 + AT_rich Low_complexity Low_complexity 1 29 0 6 882 967 202 36 9 chr12 38961794 38961854 -82295676 + URR1A DNA MER1_type 1 59 -167 6 882 338 61 20 0 chr12 38961854 38961903 -82295627 + (TATG)n Simple_repeat Simple_repeat 3 52 0 6 882 967 202 36 9 chr12 38961903 38962062 -82295468 + URR1A DNA MER1_type 60 226 0 6 882 614 263 17 0 chr12 38962703 38962882 -82294648 + L1_Mur3 LINE L1 3672 3853 -2027 6 882 6350 146 62 26 chr12 38963200 38963302 -82294228 + MYSERV16_I-int LTR ERVK 999 1091 -1235 6 882 279 0 0 0 chr12 38963302 38963333 -82294197 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 882 1062 59 29 0 chr12 38963336 38963472 -82294058 - B1_Mus1 SINE Alu -6 142 3 6 882 6350 146 62 26 chr12 38963472 38964648 -82292882 + MYSERV16_I-int LTR ERVK 1092 2326 0 6 882 1878 164 143 5 chr12 38964648 38965033 -82292497 + BGLII_B LTR ERVK 4 441 0 6 882 207 194 48 0 chr12 38965206 38965268 -82292262 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 882 1139 270 106 23 chr12 38965357 38965706 -82291824 - Lx6 LINE L1 0 7460 7083 6 882 264 167 179 0 chr12 38966055 38966139 -82291391 + Lx9 LINE L1 7418 7516 -128 6 882 445 168 0 18 chr12 38966271 38966380 -82291150 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 882 709 303 52 9 chr12 38966425 38966658 -82290872 - Lx9 LINE L1 -317 7327 7085 6 882 414 53 0 0 chr12 38967307 38967364 -82290166 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 882 501 17 0 0 chr12 38967443 38967501 -82290029 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 882 1162 146 0 5 chr12 38967885 38968071 -82289459 + B2_Mm2 SINE B2 1 185 -10 6 882 223 130 56 42 chr12 38968263 38968335 -82289195 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 882 47 61 0 0 chr12 38968462 38968544 -82288986 + AT_rich Low_complexity Low_complexity 1 82 0 6 882 297 0 0 0 chr12 38968596 38968629 -82288901 + (TAA)n Simple_repeat Simple_repeat 3 35 0 6 882 21 36 0 0 chr12 38969176 38969204 -82288326 + AT_rich Low_complexity Low_complexity 1 28 0 6 882 487 323 8 0 chr12 38969271 38969401 -82288129 + B3 SINE B2 5 135 -81 6 882 852 63 0 0 chr12 38970556 38970667 -82286863 + (TCC)n Simple_repeat Simple_repeat 2 112 0 6 882 330 18 16 66 chr12 38970691 38970752 -82286778 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 6 882 12164 142 43 20 chr12 38970752 38973677 -82283853 - Lx LINE L1 -33 6621 3651 6 882 460 319 6 30 chr12 38974958 38975123 -82282407 - RSINE1 SINE B4 -2 163 3 6 882 33640 88 12 2 chr12 38975751 38982090 -82275440 - L1Md_F2 LINE L1 0 6582 179 6 882 510 246 23 0 chr12 38982113 38982243 -82275287 - B1_Mur2 SINE Alu -16 133 1 6 882 511 179 5 105 chr12 38982683 38982883 -82274647 - Lx9 LINE L1 -7 7637 7458 6 882 270 229 0 0 chr12 38982883 38982953 -82274577 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 882 2916 244 50 21 chr12 38982965 38983780 -82273750 - Lx9 LINE L1 -127 7517 6679 6 882 192 25 48 48 chr12 38984700 38984742 -82272788 + (TTTTTA)n Simple_repeat Simple_repeat 2 43 0 6 882 392 308 25 95 chr12 38984777 38984935 -82272595 - RSINE1 SINE B4 0 165 19 6 882 703 304 58 62 chr12 38986129 38986706 -82270824 - Lx9 LINE L1 -1499 5974 5376 6 882 3872 100 0 5 chr12 38986787 38987342 -82270188 + L1Md_F2 LINE L1 6019 6570 -12 6 882 1404 253 73 13 chr12 38987899 38988271 -82269259 - MTD LTR MaLR -13 406 13 6 882 261 0 0 0 chr12 38989191 38989220 -82268310 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 6 882 237 132 0 0 chr12 38989269 38989307 -82268223 + (T)n Simple_repeat Simple_repeat 1 38 0 6 882 1955 82 4 0 chr12 38989316 38989584 -82267946 - L1_Mus1 LINE L1 -2 6565 6297 6 882 258 167 0 0 chr12 38990099 38990147 -82267383 - Lx5 LINE L1 0 7050 7003 6 882 224 273 73 73 chr12 38991186 38991336 -82266194 - B3 SINE B2 -66 150 1 6 882 183 114 0 0 chr12 38991463 38991498 -82266032 + (T)n Simple_repeat Simple_repeat 1 35 0 6 882 642 336 92 36 chr12 38991618 38992149 -82265381 + Charlie25 DNA MER1_type 331 891 -1633 6 882 328 324 124 24 chr12 38992640 38993010 -82264520 + L1MB1 LINE L1 5669 6075 -114 6 882 621 308 139 31 chr12 38993598 38994617 -82262913 - L1MB1 LINE L1 -50 7099 5964 6 882 4780 118 17 5 chr12 38994641 38995398 -82262132 - Lx3A LINE L1 -3 6978 6213 6 882 620 72 0 0 chr12 38995403 38995486 -82262044 + L1_Mur1 LINE L1 4494 4576 -1310 6 882 893 298 128 12 chr12 38995493 38995983 -82261547 - L1MB1 LINE L1 -1140 5960 5421 6 882 186 103 0 0 chr12 38995983 38996012 -82261518 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 882 893 298 128 12 chr12 38996012 38996115 -82261415 - L1MB1 LINE L1 -1680 5420 5298 6 882 960 335 33 19 chr12 38996174 38996542 -82260988 + MTD LTR MaLR 47 419 0 6 882 546 179 0 0 chr12 38996773 38996868 -82260662 + L1_Mur3 LINE L1 5331 5425 -455 6 882 324 245 108 32 chr12 38996887 38997061 -82260469 - L1MB1 LINE L1 -4890 2147 1957 6 882 1151 68 0 0 chr12 38997061 38997208 -82260322 - B1_Mus2 SINE Alu 0 147 1 6 882 249 314 45 89 chr12 38997208 38997326 -82260204 - L1MB1 LINE L1 -5074 1956 1848 6 882 304 306 143 37 chr12 38997991 38998208 -82259322 - L1M5 LINE L1 -365 5814 5575 6 882 387 0 0 0 chr12 38998301 38998344 -82259186 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 882 365 175 69 40 chr12 38998429 38998602 -82258928 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 6 882 276 282 57 5 chr12 38998607 38998766 -82258764 - L1M2 LINE L1 -1389 4491 4350 7 882 402 79 0 0 chr12 38999371 38999434 -82258096 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 882 327 91 0 127 chr12 38999494 38999557 -82257973 - ORR1C2 LTR MaLR 0 384 330 7 882 249 33 0 0 chr12 38999766 38999796 -82257734 + (CTTA)n Simple_repeat Simple_repeat 4 33 0 7 882 476 232 102 18 chr12 38999860 39000000 -82257530 - ORR1C2 LTR MaLR -44 340 191 7 882 496 234 268 29 chr12 39000001 39000173 -82257357 - ORR1C1 LTR MaLR -171 213 1 1 882 180 125 0 0 chr12 39000373 39000405 -82257125 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 882 405 0 0 0 chr12 39000405 39000450 -82257080 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 882 920 287 65 58 chr12 39000899 39001517 -82256013 + L1M2 LINE L1 4172 4793 -1350 4 882 325 172 78 8 chr12 39001517 39001646 -82255884 + (TA)n Simple_repeat Simple_repeat 1 138 0 5 882 1547 279 72 35 chr12 39001646 39002015 -82255515 + L1_Rod LINE L1 4738 5117 -730 6 882 183 42 0 0 chr12 39002015 39002039 -82255491 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 882 1547 279 72 35 chr12 39002039 39002376 -82255154 + L1_Rod LINE L1 5118 5469 -378 6 882 9833 18 0 0 chr12 39002372 39003535 -82253995 - L1Md_T LINE L1 -664 5918 4756 8 882 5299 44 0 0 chr12 39003535 39004173 -82253357 + L1Md_T LINE L1 5945 6582 0 8 882 228 71 0 0 chr12 39004179 39004207 -82253323 + L1_Rod LINE L1 5457 5484 -363 9 882 1181 238 21 30 chr12 39004759 39005088 -82252442 + L1_Rod LINE L1 5505 5830 -17 9 882 691 288 127 24 chr12 39005100 39005431 -82252099 + Lx9 LINE L1 6986 7350 -294 1 882 1133 145 43 0 chr12 39005441 39005627 -82251903 + B2_Mm2 SINE B2 2 195 0 1 882 907 151 6 11 chr12 39005627 39005801 -82251729 + GA-rich Low_complexity Low_complexity 1 173 0 1 882 388 242 54 105 chr12 39005836 39006094 -82251436 + Lx9 LINE L1 7384 7628 -16 1 882 22 35 0 0 chr12 39006105 39006134 -82251396 + AT_rich Low_complexity Low_complexity 1 29 0 1 882 21 95 0 0 chr12 39006426 39006489 -82251041 + AT_rich Low_complexity Low_complexity 1 63 0 1 882 748 159 178 0 chr12 39006500 39006657 -82250873 + URR1A DNA MER1_type 1 185 -41 1 882 1385 131 5 13 chr12 39006677 39006901 -82250629 - L1_Mus1 LINE L1 -1 6996 6775 1 882 2564 130 5 2 chr12 39006901 39007295 -82250235 - L1_Mus1 LINE L1 -354 6643 6249 1 882 5096 80 24 5 chr12 39007353 39008278 -82249252 - L1_Mus1 LINE L1 -485 6082 5135 1 882 3530 79 26 0 chr12 39008279 39008748 -82248782 + L1_Mus1 LINE L1 6087 6567 0 1 882 231 364 38 66 chr12 39009049 39009155 -82248375 - PB1D7 SINE Alu -8 112 10 1 882 251 173 27 0 chr12 39009444 39009519 -82248011 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 1 882 674 317 38 41 chr12 39009525 39009870 -82247660 - Lx8 LINE L1 -93 7380 7037 1 882 688 62 35 0 chr12 39011374 39011487 -82246043 - L1_Mus3 LINE L1 -5 6633 6517 2 882 29 70 0 0 chr12 39011897 39011954 -82245576 + AT_rich Low_complexity Low_complexity 1 57 0 2 882 1416 247 55 23 chr12 39012048 39012445 -82245085 - Lx6 LINE L1 -805 6655 6246 2 882 402 85 0 0 chr12 39012469 39012528 -82245002 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 882 432 0 0 0 chr12 39012537 39012585 -82244945 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 882 418 265 65 50 chr12 39012586 39012785 -82244745 - Lx7 LINE L1 -1531 6165 5964 2 882 216 86 0 0 chr12 39013031 39013066 -82244464 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 882 331 351 19 38 chr12 39013637 39013794 -82243736 + MER20 DNA MER1_type 20 173 -46 2 882 21 0 0 0 chr12 39014237 39014258 -82243272 + AT_rich Low_complexity Low_complexity 1 21 0 2 882 234 196 206 0 chr12 39015006 39015098 -82242432 - Lx9 LINE L1 -15 7629 7519 2 882 260 154 19 0 chr12 39015101 39015153 -82242377 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 882 548 14 14 0 chr12 39015159 39015228 -82242302 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 3 882 275 273 53 29 chr12 39015258 39015428 -82242102 - Lx9 LINE L1 -132 7512 7339 2 882 22 70 0 0 chr12 39015428 39015471 -82242059 + AT_rich Low_complexity Low_complexity 1 43 0 3 882 21 36 0 0 chr12 39015586 39015614 -82241916 + AT_rich Low_complexity Low_complexity 1 28 0 3 882 22 0 0 0 chr12 39015936 39015958 -82241572 + AT_rich Low_complexity Low_complexity 1 22 0 3 882 210 316 62 25 chr12 39016173 39016254 -82241276 - MIRc SINE MIR -176 92 9 3 882 1175 54 0 0 chr12 39016885 39017032 -82240498 - B1_Mus2 SINE Alu 0 147 1 3 882 266 302 40 40 chr12 39018196 39018320 -82239210 - B3 SINE B2 -24 192 69 3 882 31 68 0 0 chr12 39018883 39018942 -82238588 + AT_rich Low_complexity Low_complexity 1 59 0 3 882 3753 107 24 0 chr12 39018945 39019479 -82238051 - L1_Mus3 LINE L1 -308 6328 5782 3 882 1727 131 27 24 chr12 39019482 39019779 -82237751 + L1_Mus3 LINE L1 6331 6628 -10 3 882 441 0 0 0 chr12 39019779 39019828 -82237702 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 882 970 268 131 7 chr12 39020141 39020513 -82237017 + MTD LTR MaLR 1 405 -14 4 882 279 250 62 45 chr12 39021682 39021858 -82235672 - Lx9 LINE L1 0 7644 7466 4 882 12550 77 2 4 chr12 39022348 39024075 -82233455 - L1_Mm LINE L1 -1061 4822 3100 4 882 578 82 0 0 chr12 39024074 39024147 -82233383 + L1Md_F2 LINE L1 5513 5585 -298 4 882 7289 76 12 6 chr12 39024148 39025126 -82232404 + L1Md_F2 LINE L1 5587 6570 -12 4 882 802 76 84 0 chr12 39027501 39027620 -82229910 - L1_Mus2 LINE L1 -1 6565 6437 4 882 24 0 0 0 chr12 39028109 39028133 -82229397 + AT_rich Low_complexity Low_complexity 1 24 0 4 882 330 331 64 8 chr12 39028797 39028922 -82228608 + ID_B1 SINE B4 92 223 -1 4 882 616 294 52 0 chr12 39028928 39029125 -82228405 + B3A SINE B2 4 214 -2 4 882 249 33 0 0 chr12 39029709 39029739 -82227791 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 4 882 456 146 0 0 chr12 39032409 39032512 -82225018 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 5 882 246 32 0 0 chr12 39032526 39032557 -82224973 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 882 401 311 90 47 chr12 39032920 39033153 -82224377 - MTEa LTR MaLR -131 248 6 5 882 506 340 67 120 chr12 39033214 39034074 -82223456 - MLT1F-int LTR MaLR -426 1063 249 5 882 5101 134 33 31 chr12 39035129 39036009 -82221521 - Lx3C LINE L1 0 6976 6095 5 882 446 299 16 64 chr12 39036979 39037126 -82220404 - RSINE1 SINE B4 -15 150 7 5 882 2939 75 12 7 chr12 39037126 39037531 -82219999 + MTB_Mm LTR MaLR 1 407 0 5 882 24 67 0 0 chr12 39039499 39039544 -82217986 + AT_rich Low_complexity Low_complexity 1 45 0 5 882 25 51 0 0 chr12 39040309 39040348 -82217182 + AT_rich Low_complexity Low_complexity 1 39 0 5 882 513 0 0 0 chr12 39040812 39040869 -82216661 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 882 1146 97 103 0 chr12 39040907 39041082 -82216448 - B2_Mm2 SINE B2 -1 194 2 6 882 394 268 66 60 chr12 39041216 39041367 -82216163 - Lx8 LINE L1 -816 6657 6506 6 882 30 0 0 0 chr12 39042121 39042151 -82215379 + AT_rich Low_complexity Low_complexity 1 30 0 6 882 868 160 40 7 chr12 39042152 39042303 -82215227 - ORR1C2 LTR MaLR 0 384 229 6 882 2986 174 40 20 chr12 39042442 39043039 -82214491 - Lx2B LINE L1 -5 6995 6387 6 882 2093 269 37 34 chr12 39043245 39043889 -82213641 - Lx9 LINE L1 -246 7398 6753 6 882 7152 186 28 14 chr12 39045101 39046606 -82210924 - Lx3C LINE L1 -1 6975 5453 6 882 258 32 0 0 chr12 39046606 39046637 -82210893 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 882 7152 171 10 0 chr12 39046637 39047475 -82210055 - Lx3C LINE L1 -434 5452 4602 6 882 2851 169 14 7 chr12 39047466 39048020 -82209510 - Lx3C LINE L1 -1864 4022 3465 6 882 2160 262 19 12 chr12 39048054 39048293 -82209237 - Lx6 LINE L1 -471 6989 6748 6 882 186 43 0 0 chr12 39048293 39048316 -82209214 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 882 2160 262 19 12 chr12 39048316 39048648 -82208882 - Lx6 LINE L1 -713 6747 6415 6 882 3937 201 53 37 chr12 39048671 39049538 -82207992 - RMER13B LTR ERVK -27 881 1 7 882 27 49 0 0 chr12 39049555 39049596 -82207934 + AT_rich Low_complexity Low_complexity 1 41 0 7 882 1439 241 79 14 chr12 39049728 39050119 -82207411 + MTD LTR MaLR 1 403 -16 7 882 632 36 12 0 chr12 39050681 39050764 -82206766 + (GA)n Simple_repeat Simple_repeat 2 85 0 7 882 29 0 0 0 chr12 39051320 39051349 -82206181 + AT_rich Low_complexity Low_complexity 1 29 0 7 882 23 54 0 0 chr12 39051559 39051596 -82205934 + AT_rich Low_complexity Low_complexity 1 37 0 7 882 277 178 37 31 chr12 39051600 39051762 -82205768 + (TA)n Simple_repeat Simple_repeat 1 163 0 7 882 1496 238 46 25 chr12 39051974 39052213 -82205317 - ORR1D1 LTR MaLR 0 374 128 7 882 3001 89 10 0 chr12 39052213 39052630 -82204900 + BGLII LTR ERVK 1 421 0 7 882 1496 238 46 25 chr12 39052630 39052756 -82204774 - ORR1D1 LTR MaLR -247 127 1 7 882 3176 53 0 2 chr12 39053347 39053741 -82203789 + L1Md_F3 LINE L1 6177 6569 -15 7 882 44 69 0 25 chr12 39053960 39054079 -82203451 + AT_rich Low_complexity Low_complexity 1 116 0 8 882 1057 68 0 64 chr12 39056877 39057033 -82200497 + B1_Mm SINE Alu 2 147 0 8 882 364 62 15 15 chr12 39057037 39057102 -82200428 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 8 882 23 68 0 0 chr12 39057731 39057775 -82199755 + AT_rich Low_complexity Low_complexity 1 44 0 8 882 656 297 41 25 chr12 39058003 39058321 -82199209 - L1M2 LINE L1 -2444 3699 3377 8 882 441 285 206 47 chr12 39058348 39058800 -82198730 + L1M2 LINE L1 4192 4746 -1397 8 882 992 102 14 0 chr12 39058821 39058968 -82198562 - Lx2 LINE L1 -1017 5980 5832 8 883 3938 172 25 22 chr12 39059946 39060717 -82196813 - RLTR22_Mur LTR ERVK -1072 776 4 8 883 579 305 51 51 chr12 39060723 39060937 -82196593 - B4A SINE B4 -71 221 8 8 883 36 0 0 0 chr12 39061178 39061214 -82196316 + AT_rich Low_complexity Low_complexity 1 36 0 8 883 21 0 0 0 chr12 39061738 39061759 -82195771 + AT_rich Low_complexity Low_complexity 1 21 0 9 883 1083 336 23 6 chr12 39062537 39062884 -82194646 + MTEa LTR MaLR 19 371 -8 9 883 550 221 47 8 chr12 39062906 39063034 -82194496 + MTEa-int LTR MaLR 16 148 -1432 9 883 1634 326 52 2 chr12 39063013 39063570 -82193960 + MTEa-int LTR MaLR 871 1455 -125 9 883 758 356 89 14 chr12 39063647 39063995 -82193535 + MTE2b LTR MaLR 1 374 -5 9 883 883 302 50 17 chr12 39064881 39065322 -82192208 - Lx5 LINE L1 -584 6876 6454 9 883 2679 86 26 3 chr12 39065353 39065739 -82191791 - L1_Mus3 LINE L1 -1 6637 6243 9 883 235 121 0 0 chr12 39065739 39065772 -82191758 + L1_Mus3 LINE L1 6225 6257 -381 9 883 227 93 23 0 chr12 39066088 39066131 -82191399 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 883 310 226 10 76 chr12 39067177 39067290 -82190240 - Lx4B LINE L1 -8 7050 6892 9 883 731 286 16 6 chr12 39067805 39067988 -82189542 + ID_B1 SINE B4 3 187 -37 9 883 340 284 24 65 chr12 39067889 39067982 -82189548 + MT2B LTR ERVL 169 256 -345 9 883 300 51 0 0 chr12 39067982 39068021 -82189509 + B1_Mur4 SINE Alu 1 39 -111 9 883 525 71 0 0 chr12 39068023 39068093 -82189437 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 883 213 275 12 36 chr12 39068112 39068195 -82189335 + (TATG)n Simple_repeat Simple_repeat 2 82 0 1 883 928 114 6 28 chr12 39069056 39069236 -82188294 + (GGAA)n Simple_repeat Simple_repeat 2 177 0 1 883 27 73 0 0 chr12 39069868 39069923 -82187607 + AT_rich Low_complexity Low_complexity 1 55 0 1 883 338 353 45 17 chr12 39071718 39071894 -82185636 + MIRb SINE MIR 25 205 -63 1 883 498 270 63 0 chr12 39071976 39072102 -82185428 + B1F SINE Alu 9 142 -7 1 883 912 175 155 0 chr12 39072200 39072394 -82185136 + URR1A DNA MER1_type 2 225 -1 1 883 420 222 0 0 chr12 39072557 39072665 -82184865 + (TGG)n Simple_repeat Simple_repeat 3 110 0 1 883 33825 83 13 17 chr12 39072695 39078771 -82178759 - L1Md_F2 LINE L1 0 6582 532 1 883 256 93 0 0 chr12 39078865 39078908 -82178622 - B1_Mur4 SINE Alu -1 149 107 1 883 402 333 55 11 chr12 39079171 39079353 -82178177 + MER58A DNA MER1_type 2 191 -33 1 883 842 245 0 107 chr12 39079843 39080085 -82177445 - URR1B DNA MER1_type 0 225 10 1 883 2690 58 6 0 chr12 39080999 39081342 -82176188 - L1_Mus1 LINE L1 0 6567 6223 1 883 373 299 0 40 chr12 39083542 39083643 -82173887 + PB1D10 SINE Alu 14 110 -7 1 883 1587 291 32 30 chr12 39083925 39084614 -82172916 - L1MA6 LINE L1 -1 6299 5610 1 883 1559 249 165 51 chr12 39085101 39085634 -82171896 + RMER19B LTR ERVK 309 902 0 1 883 345 100 0 0 chr12 39085678 39085728 -82171802 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 883 186 43 0 0 chr12 39087202 39087225 -82170305 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 883 1139 75 0 0 chr12 39087225 39087362 -82170168 - B1_Mus2 SINE Alu -9 138 2 1 883 292 381 0 0 chr12 39088468 39088552 -82168978 + B1F SINE Alu 1 84 -65 1 883 504 0 0 0 chr12 39088855 39088911 -82168619 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 883 990 90 8 0 chr12 39088913 39089047 -82168483 - B1_Mus2 SINE Alu -12 135 1 1 883 466 317 102 74 chr12 39089103 39089496 -82168034 - MTE2a LTR MaLR -1 378 1 1 883 240 289 47 35 chr12 39090075 39090161 -82167369 + MIRb SINE MIR 142 228 -40 1 883 371 333 10 0 chr12 39090386 39090485 -82167045 + ID_B1 SINE B4 71 170 -54 1 883 345 322 84 42 chr12 39090692 39090977 -82166553 - L2 LINE L2 -668 2751 2455 1 883 189 94 0 0 chr12 39091329 39091361 -82166169 + (T)n Simple_repeat Simple_repeat 1 32 0 1 883 1352 236 62 28 chr12 39091803 39092402 -82165128 - Lx5 LINE L1 -551 6909 6123 1 883 396 0 0 0 chr12 39092403 39092447 -82165083 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 883 1193 306 30 23 chr12 39092497 39092892 -82164638 + Lx5 LINE L1 6635 7032 -18 1 883 330 80 0 0 chr12 39092904 39092954 -82164576 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1 883 224 270 13 13 chr12 39093394 39093469 -82164061 + PB1D10 SINE Alu 43 117 0 1 883 25 0 0 0 chr12 39093469 39093494 -82164036 + AT_rich Low_complexity Low_complexity 1 25 0 1 883 3017 84 12 5 chr12 39093497 39093914 -82163616 - BGLII LTR ERVK -1 420 1 1 883 1329 73 0 0 chr12 39093981 39094159 -82163371 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 1 883 540 0 27 0 chr12 39094353 39094426 -82163104 - L1Md_F3 LINE L1 0 6584 6510 1 883 284 48 47 31 chr12 39094453 39094517 -82163013 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 1 883 819 73 0 0 chr12 39094730 39094840 -82162690 + B1_Mm SINE Alu 2 111 -36 1 883 1813 240 72 6 chr12 39097567 39098050 -82159480 - Lx4B LINE L1 -4 7054 6540 1 883 1053 191 0 10 chr12 39098046 39098242 -82159288 - Lx5 LINE L1 -585 6465 6272 1 883 558 309 91 5 chr12 39098251 39098472 -82159058 - Lx9 LINE L1 -619 7025 6786 1 883 1203 41 7 0 chr12 39099149 39099296 -82158234 + B1_Mus1 SINE Alu 1 148 0 1 883 335 17 0 78 chr12 39099299 39099363 -82158167 + (CAAAAA)n Simple_repeat Simple_repeat 3 61 0 1 883 30 27 0 0 chr12 39101268 39101305 -82156225 + AT_rich Low_complexity Low_complexity 1 37 0 1 883 26 0 0 0 chr12 39101352 39101378 -82156152 + AT_rich Low_complexity Low_complexity 1 26 0 1 883 3270 146 59 56 chr12 39101570 39102210 -82155320 + RLTR26 LTR ERVK 1 642 0 1 883 622 273 74 0 chr12 39102210 39102426 -82155104 - Lx8 LINE L1 -883 6590 6359 1 883 225 65 0 0 chr12 39102958 39102989 -82154541 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 1 883 1726 91 4 16 chr12 39103401 39103659 -82153871 + L1_Mus2 LINE L1 6312 6566 0 1 883 302 115 0 19 chr12 39103703 39103756 -82153774 + (GGA)n Simple_repeat Simple_repeat 3 54 0 1 883 23 0 0 0 chr12 39104628 39104651 -82152879 + AT_rich Low_complexity Low_complexity 1 23 0 1 883 26 64 0 0 chr12 39104820 39104867 -82152663 + AT_rich Low_complexity Low_complexity 1 47 0 1 883 364 51 0 33 chr12 39105710 39105771 -82151759 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 883 1095 65 0 0 chr12 39105771 39105909 -82151621 - B1_Mus2 SINE Alu -9 138 1 1 883 698 196 33 11 chr12 39106127 39106308 -82151222 + Lx9 LINE L1 7460 7644 0 1 883 3265 203 26 53 chr12 39106320 39107091 -82150439 - Lx2B LINE L1 -13 6987 6238 1 883 208 358 65 15 chr12 39108331 39108483 -82149047 + L2a LINE L2 3188 3396 -30 1 883 867 307 4 9 chr12 39110822 39111049 -82146481 + B4 SINE B4 5 230 -62 1 883 192 97 0 0 chr12 39111091 39111122 -82146408 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 883 428 302 19 45 chr12 39111163 39111319 -82146211 + MER2B DNA MER2_type 164 315 -21 1 883 567 74 0 0 chr12 39112199 39112280 -82145250 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 883 183 80 0 0 chr12 39112403 39112428 -82145102 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1 883 183 378 33 22 chr12 39114966 39115058 -82142472 - MIRb SINE MIR -136 132 40 1 883 188 61 61 0 chr12 39116945 39116978 -82140552 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 883 262 275 0 14 chr12 39116980 39117050 -82140480 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 883 487 267 54 137 chr12 39117060 39117264 -82140266 - B3A SINE B2 -7 191 1 1 883 615 92 0 0 chr12 39117343 39117430 -82140100 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 1 883 207 0 0 0 chr12 39117433 39117456 -82140074 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 883 317 364 65 19 chr12 39117887 39118041 -82139489 - B4A SINE B4 -128 164 4 1 883 28 61 0 0 chr12 39118654 39118703 -82138827 + AT_rich Low_complexity Low_complexity 1 49 0 1 883 25 75 0 0 chr12 39119074 39119127 -82138403 + AT_rich Low_complexity Low_complexity 1 53 0 1 883 226 309 84 40 chr12 39121205 39121407 -82136123 - MER58D DNA MER1_type -6 380 170 1 883 1945 149 35 12 chr12 39121542 39121881 -82135649 + ORR1B2 LTR MaLR 3 349 -18 1 883 1846 66 110 32 chr12 39122183 39122465 -82135065 + L1_Mus2 LINE L1 6263 6566 0 1 883 21 0 0 0 chr12 39123223 39123244 -82134286 + AT_rich Low_complexity Low_complexity 1 21 0 1 883 637 233 0 15 chr12 39123519 39123654 -82133876 + B1_Mur4 SINE Alu 5 137 -13 1 883 180 0 0 0 chr12 39123654 39123674 -82133856 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 883 180 0 0 0 chr12 39125350 39125370 -82132160 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 883 214 345 0 0 chr12 39125627 39125685 -82131845 + PB1D10 SINE Alu 34 91 -26 1 883 917 172 28 88 chr12 39126313 39126530 -82131000 + Lx4B LINE L1 6841 7044 -14 1 883 275 0 0 28 chr12 39127560 39127596 -82129934 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 883 500 45 15 0 chr12 39130318 39130385 -82127145 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 883 270 0 0 0 chr12 39130643 39130673 -82126857 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 883 978 93 0 0 chr12 39130889 39131028 -82126502 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 1 883 491 269 7 0 chr12 39132638 39132779 -82124751 - L1MD3 LINE L1 -14 7981 7840 1 883 183 87 20 61 chr12 39134158 39134207 -82123323 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 883 576 219 40 8 chr12 39134309 39134433 -82123097 + B1_Mur2 SINE Alu 10 137 -12 1 883 205 27 53 26 chr12 39134436 39134474 -82123056 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 883 335 323 111 25 chr12 39135509 39135671 -82121859 + MER20 DNA MER1_type 17 192 -27 1 883 336 143 0 0 chr12 39136121 39136177 -82121353 + (CAT)n Simple_repeat Simple_repeat 2 57 0 1 883 1309 118 93 22 chr12 39136180 39136286 -82121244 - Lx3A LINE L1 0 6981 6858 1 883 267 31 0 0 chr12 39136286 39136318 -82121212 + (CCCCCT)n Simple_repeat Simple_repeat 4 35 0 1 883 1309 118 93 22 chr12 39136318 39136437 -82121093 - Lx3A LINE L1 -124 6857 6740 1 883 188 328 15 98 chr12 39137278 39137410 -82120120 - L2 LINE L2 -1332 2087 1967 1 883 180 0 0 0 chr12 39137759 39137779 -82119751 + (T)n Simple_repeat Simple_repeat 1 20 0 1 883 261 0 0 0 chr12 39138781 39138810 -82118720 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 883 495 0 0 0 chr12 39138810 39138864 -82118666 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 883 240 333 38 66 chr12 39139049 39139155 -82118375 - PB1D7 SINE Alu 0 120 18 1 883 375 290 11 0 chr12 39139068 39139161 -82118369 - ID_B1 SINE B4 -38 186 93 1 883 238 356 124 9 chr12 39139173 39139278 -82118252 - PB1D10 SINE Alu 0 117 1 1 883 22 0 0 0 chr12 39141097 39141119 -82116411 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 247 365 51 46 chr12 39142292 39142467 -82115063 - MLT1H LTR MaLR -307 242 67 2 883 190 342 35 35 chr12 39142726 39142841 -82114689 + L2a LINE L2 3312 3426 0 2 883 21 0 0 0 chr12 39142937 39142958 -82114572 + AT_rich Low_complexity Low_complexity 1 21 0 2 883 282 309 0 10 chr12 39144351 39144449 -82113081 + (TATG)n Simple_repeat Simple_repeat 2 98 0 2 883 21 0 0 0 chr12 39144612 39144633 -82112897 + AT_rich Low_complexity Low_complexity 1 21 0 2 883 1245 113 27 0 chr12 39146884 39147070 -82110460 + B2_Mm2 SINE B2 1 191 -4 2 883 304 226 32 0 chr12 39148127 39148189 -82109341 + Lx8 LINE L1 7263 7326 -147 2 883 975 265 63 4 chr12 39148215 39148484 -82109046 - ORR1D1 LTR MaLR -89 285 1 2 883 289 281 44 19 chr12 39149383 39149496 -82108034 + MLT1A0 LTR MaLR 2 119 -246 2 883 27 81 0 0 chr12 39152852 39152914 -82104616 + AT_rich Low_complexity Low_complexity 1 62 0 2 883 1729 253 49 0 chr12 39153511 39153899 -82103631 + MTD LTR MaLR 3 409 -10 2 883 21 36 0 0 chr12 39154840 39154868 -82102662 + AT_rich Low_complexity Low_complexity 1 28 0 2 883 258 32 0 0 chr12 39154975 39155006 -82102524 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 883 588 287 7 0 chr12 39155006 39155149 -82102381 - B1_Mus2 SINE Alu -3 144 1 2 883 225 43 20 61 chr12 39155149 39155161 -82102369 + (TTTTC)n Simple_repeat Simple_repeat 5 15 0 2 883 1275 89 0 0 chr12 39155161 39155340 -82102190 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 2 883 225 43 20 61 chr12 39155340 39155376 -82102154 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 2 883 5634 61 4 0 chr12 39155691 39156409 -82101121 - L1_Mus1 LINE L1 0 6567 5847 2 883 26 30 0 0 chr12 39156759 39156792 -82100738 + AT_rich Low_complexity Low_complexity 1 33 0 2 883 713 317 46 21 chr12 39156894 39157178 -82100352 - B4A SINE B4 0 292 2 2 883 26 0 0 0 chr12 39157212 39157238 -82100292 + AT_rich Low_complexity Low_complexity 1 26 0 2 883 423 0 0 0 chr12 39157792 39157839 -82099691 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 883 342 61 0 0 chr12 39157839 39157888 -82099642 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 883 28 61 0 0 chr12 39158393 39158442 -82099088 + AT_rich Low_complexity Low_complexity 1 49 0 2 883 360 74 19 0 chr12 39159232 39159286 -82098244 + Lx2A LINE L1 6945 6999 -9 2 883 6420 99 46 5 chr12 39159439 39160400 -82097130 - Lx3_Mus LINE L1 0 7009 6010 2 883 689 69 0 0 chr12 39160393 39160494 -82097036 - L1_Mus1 LINE L1 0 6567 6467 2 883 5506 88 8 0 chr12 39160494 39161264 -82096266 + L1_Mm LINE L1 3758 4533 -1350 2 883 3630 68 0 2 chr12 39161270 39161754 -82095776 + L1_Mur1 LINE L1 3894 4376 -1510 2 883 650 286 45 28 chr12 39163622 39163798 -82093732 + B3A SINE B2 2 180 -18 2 883 186 158 0 0 chr12 39164234 39164262 -82093268 + A-rich Low_complexity Low_complexity 1 28 0 2 883 1116 133 0 0 chr12 39164262 39164442 -82093088 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 883 564 15 0 0 chr12 39164494 39164559 -82092971 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 883 815 29 10 0 chr12 39164560 39164662 -82092868 + (GAA)n Simple_repeat Simple_repeat 2 104 0 2 883 240 189 57 0 chr12 39164663 39164716 -82092814 + GA-rich Low_complexity Low_complexity 4 59 0 2 883 291 225 0 0 chr12 39165049 39165120 -82092410 + CT-rich Low_complexity Low_complexity 3 73 0 2 883 414 0 0 0 chr12 39165897 39165943 -82091587 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 883 29 47 0 0 chr12 39165948 39165991 -82091539 + AT_rich Low_complexity Low_complexity 1 43 0 2 883 732 196 0 0 chr12 39168003 39168236 -82089294 + CT-rich Low_complexity Low_complexity 1 233 0 2 883 851 313 65 27 chr12 39168236 39168604 -82088926 - Lx8 LINE L1 -247 7226 6845 2 883 24 0 0 0 chr12 39169496 39169520 -82088010 + AT_rich Low_complexity Low_complexity 1 24 0 2 883 1183 48 0 26 chr12 39170012 39170163 -82087367 + B1_Mm SINE Alu 1 147 0 2 883 243 0 0 0 chr12 39170164 39170191 -82087339 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 883 234 282 0 0 chr12 39171197 39171328 -82086202 + (CA)n Simple_repeat Simple_repeat 2 132 0 2 883 216 0 0 0 chr12 39171539 39171563 -82085967 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 883 416 329 18 88 chr12 39171573 39171743 -82085787 + RSINE1 SINE B4 8 165 0 2 883 1240 231 19 112 chr12 39171889 39172079 -82085451 - MT2B LTR ERVL -5 596 430 2 883 536 42 0 14 chr12 39172079 39172151 -82085379 + (TTA)n Simple_repeat Simple_repeat 2 72 0 2 883 1140 70 0 14 chr12 39172153 39172299 -82085231 - B1_Mus2 SINE Alu -1 146 3 2 883 1240 263 38 125 chr12 39172299 39172635 -82084895 - MT2B LTR ERVL -172 429 1 2 883 5707 206 48 4 chr12 39172635 39173887 -82083643 - MERVL_2A-int LTR ERVL 0 5761 4454 2 883 405 58 0 0 chr12 39174923 39174975 -82082555 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 883 525 366 29 66 chr12 39174978 39175221 -82082309 - B4 SINE B4 -6 286 53 2 883 2093 119 15 3 chr12 39176073 39176403 -82081127 + L1_Mus3 LINE L1 6300 6633 -5 2 883 23 0 0 0 chr12 39178829 39178852 -82078678 + AT_rich Low_complexity Low_complexity 1 23 0 2 883 483 18 0 0 chr12 39179461 39179517 -82078013 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 883 276 190 0 0 chr12 39179978 39180057 -82077473 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 883 1587 47 14 5 chr12 39180600 39180812 -82076718 + L1Md_F2 LINE L1 6368 6581 -1 2 883 1019 65 14 0 chr12 39180925 39181063 -82076467 - B1_Mus1 SINE Alu 0 148 9 2 883 442 205 36 109 chr12 39180951 39181065 -82076465 - MT2B LTR ERVL -325 276 173 2 883 292 22 44 0 chr12 39181065 39181110 -82076420 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 883 442 205 36 109 chr12 39181110 39181132 -82076398 - MT2B LTR ERVL -429 172 150 2 883 180 0 0 0 chr12 39181173 39181193 -82076337 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 2 883 1061 190 87 17 chr12 39181445 39181675 -82075855 - Lx5 LINE L1 -3 7047 6802 2 883 198 427 19 58 chr12 39182663 39182924 -82074606 + L2a LINE L2 2962 3212 -214 2 883 1344 226 30 22 chr12 39183038 39183387 -82074143 - RMER19B LTR ERVK -254 357 1 2 883 901 312 70 14 chr12 39184459 39184829 -82072701 - Charlie1a DNA MER1_type -268 1187 797 2 883 8391 38 3 1 chr12 39185011 39186355 -82071175 - L1Md_F2 LINE L1 -3 6579 5231 2 883 656 77 0 0 chr12 39186354 39186445 -82071085 + L1Md_F2 LINE L1 5108 5198 -685 2 883 459 257 83 0 chr12 39186445 39186589 -82070941 - ID_B1 SINE B4 -67 157 2 2 883 435 266 139 81 chr12 39186581 39186611 -82070919 - Charlie1a DNA MER1_type -883 572 545 2 883 492 48 0 0 chr12 39186611 39186674 -82070856 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 883 435 266 139 81 chr12 39186674 39186987 -82070543 - Charlie1a DNA MER1_type -911 544 209 2 883 622 125 38 4 chr12 39187956 39188079 -82069451 - L1_Mus2 LINE L1 0 6582 6435 2 883 27 49 0 0 chr12 39188995 39189036 -82068494 + AT_rich Low_complexity Low_complexity 1 41 0 2 883 23 68 0 0 chr12 39189847 39189891 -82067639 + AT_rich Low_complexity Low_complexity 1 44 0 2 883 819 21 0 0 chr12 39189957 39190054 -82067476 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 2 110 8645 22 35 35 chr12 39190517 39192167 -82065363 - L1Md_A LINE L1 0 6582 4874 2 884 225 183 46 77 chr12 39192167 39192232 -82065298 + RMER20A LTR ERVK 186 248 -268 2 884 8645 22 35 35 chr12 39192232 39192358 -82065172 - L1Md_A LINE L1 0 4873 4742 2 884 4330 242 150 18 chr12 39192523 39194006 -82063524 - Lx9 LINE L1 -196 7448 5770 2 884 235 213 0 0 chr12 39193985 39194046 -82063484 - Lx6 LINE L1 -2 7458 7398 2 884 311 165 52 62 chr12 39194043 39194140 -82063390 - Lx9 LINE L1 -93 5754 5659 2 884 261 0 0 0 chr12 39194466 39194495 -82063035 + (T)n Simple_repeat Simple_repeat 1 29 0 2 884 24 0 0 0 chr12 39195154 39195178 -82062352 + AT_rich Low_complexity Low_complexity 1 24 0 2 884 239 54 0 26 chr12 39195845 39195883 -82061647 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 884 28 71 0 0 chr12 39196337 39196393 -82061137 + AT_rich Low_complexity Low_complexity 1 56 0 2 884 423 283 57 72 chr12 39196701 39196895 -82060635 + B3 SINE B2 2 192 -3 2 884 4174 162 19 0 chr12 39196928 39197240 -82060290 - L1_Mm LINE L1 -832 5051 4731 2 884 252 0 0 0 chr12 39197240 39197268 -82060262 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 884 4174 162 19 0 chr12 39197268 39197708 -82059822 - L1_Mm LINE L1 -1153 4730 4286 2 884 1087 193 17 17 chr12 39197708 39197945 -82059585 + L1_Mur2 LINE L1 5058 5294 -583 2 884 5180 41 0 0 chr12 39197939 39198595 -82058935 - L1Md_F2 LINE L1 -381 6201 5546 2 884 2502 89 3 11 chr12 39198595 39198957 -82058573 + L1Md_F2 LINE L1 6223 6581 -1 2 884 1358 57 6 0 chr12 39198969 39199146 -82058384 + L1_Mm LINE L1 5288 5465 -418 2 884 1602 140 27 62 chr12 39199134 39199460 -82058070 + L1_Mus1 LINE L1 226 507 -6131 2 884 29409 121 11 41 chr12 39199497 39205988 -82051542 + L1_Mus1 LINE L1 261 6654 0 2 884 7134 92 36 2 chr12 39206003 39207158 -82050372 + L1_Mus4 LINE L1 5441 6635 -1 2 884 240 353 70 85 chr12 39207241 39207442 -82050088 - ORR1E LTR MaLR -149 210 13 2 884 599 0 14 0 chr12 39207569 39207640 -82049890 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 2 884 3467 193 37 20 chr12 39208642 39209346 -82048184 - RMER6D LTR ERVK -4 716 1 2 884 206 205 0 0 chr12 39209620 39209659 -82047871 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 884 1784 137 32 74 chr12 39209774 39210113 -82047417 - ORR1A3 LTR MaLR 0 326 2 2 884 1500 144 52 40 chr12 39211676 39212023 -82045507 + RMER6C LTR ERVK 340 690 0 2 884 1402 221 108 12 chr12 39212041 39212376 -82045154 + ORR1D1 LTR MaLR 8 374 0 2 884 271 359 84 65 chr12 39212376 39212531 -82044999 + MLT1D LTR MaLR 346 503 -2 2 884 197 300 146 0 chr12 39212605 39212715 -82044815 - L2 LINE L2 -529 2890 2765 2 884 504 351 10 46 chr12 39212895 39213197 -82044333 + B4A SINE B4 2 292 0 2 884 7917 55 2 2 chr12 39213488 39215115 -82042415 - L1Md_F2 LINE L1 -11 6571 4947 2 884 38 0 0 0 chr12 39217657 39217695 -82039835 + AT_rich Low_complexity Low_complexity 1 38 0 2 884 1185 95 0 0 chr12 39217817 39218482 -82039048 + (CA)n Simple_repeat Simple_repeat 1 665 0 3 884 959 300 58 15 chr12 39218482 39218875 -82038655 - Lx9 LINE L1 -187 7457 7048 3 884 1207 280 91 15 chr12 39218914 39219139 -82038391 - Lx9 LINE L1 -888 6756 6509 3 884 1478 161 39 162 chr12 39219139 39219607 -82037923 - RMER17C LTR ERVK 0 410 1 3 884 1207 294 89 16 chr12 39219607 39219831 -82037699 - Lx9 LINE L1 -1136 6508 6128 3 884 429 20 0 0 chr12 39220540 39220590 -82036940 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 884 406 331 29 51 chr12 39221596 39221733 -82035797 + RSINE1 SINE B4 17 150 -15 3 884 471 118 0 0 chr12 39221746 39221822 -82035708 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 884 261 0 0 0 chr12 39221822 39221850 -82035680 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 884 292 298 0 23 chr12 39222068 39222154 -82035376 + B3A SINE B2 115 198 0 3 884 22 0 0 0 chr12 39222525 39222547 -82034983 + AT_rich Low_complexity Low_complexity 1 22 0 3 884 1003 29 7 14 chr12 39223842 39223980 -82033550 - L1Md_F2 LINE L1 -12 6570 6434 3 884 493 276 106 0 chr12 39225324 39225447 -82032083 - B1_Mur1 SINE Alu -7 142 7 3 884 286 238 69 35 chr12 39225369 39225456 -82032074 - MT2B LTR ERVL -351 250 161 3 884 890 306 106 21 chr12 39225500 39226173 -82031357 - L1M2 LINE L1 -841 5302 4573 3 884 386 220 22 0 chr12 39226166 39226257 -82031273 + L1M LINE L1 5333 5425 -875 3 884 603 139 0 0 chr12 39226629 39226730 -82030800 + (TA)n Simple_repeat Simple_repeat 1 101 0 3 884 435 326 96 65 chr12 39228292 39228646 -82028884 + MLT1A LTR MaLR 2 366 -8 3 884 18134 67 5 2 chr12 39229198 39231594 -82025936 + L1Md_F2 LINE L1 3184 5586 -297 3 884 8104 44 0 2 chr12 39231595 39232581 -82024949 + L1Md_F2 LINE L1 5588 6571 -11 3 884 236 326 31 42 chr12 39233552 39233648 -82023882 + PB1D7 SINE Alu 1 95 -25 3 884 432 0 0 0 chr12 39234685 39234733 -82022797 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 884 531 0 0 0 chr12 39234733 39234791 -82022739 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 884 195 139 0 0 chr12 39234793 39234829 -82022701 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 3 884 38816 17 11 16 chr12 39235720 39237369 -82020161 - L1Md_A LINE L1 -1 6581 4927 3 884 225 183 46 77 chr12 39237369 39237434 -82020096 + RMER20A LTR ERVK 186 248 -268 3 884 38816 17 11 16 chr12 39237434 39241904 -82015626 - L1Md_A LINE L1 -1 4926 439 3 884 613 252 7 21 chr12 39242256 39242398 -82015132 + B1_Mur2 SINE Alu 2 141 -8 3 884 575 71 12 0 chr12 39242613 39242698 -82014832 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 884 198 0 0 0 chr12 39243422 39243444 -82014086 + (T)n Simple_repeat Simple_repeat 1 22 0 3 884 540 256 167 0 chr12 39244193 39244373 -82013157 - B3 SINE B2 -5 211 2 3 884 216 67 0 0 chr12 39244374 39244404 -82013126 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 884 1194 42 14 0 chr12 39244611 39244755 -82012775 - B1_Mm SINE Alu -1 146 1 3 884 236 284 13 39 chr12 39245462 39245539 -82011991 + ID4 SINE ID 9 83 0 3 884 1106 118 37 11 chr12 39246399 39246588 -82010942 + B2_Mm2 SINE B2 2 195 0 3 884 210 47 22 65 chr12 39246608 39246654 -82010876 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 884 448 325 34 77 chr12 39247242 39247449 -82010081 + B3A SINE B2 1 198 0 3 884 809 129 0 7 chr12 39247470 39247610 -82009920 + (GA)n Simple_repeat Simple_repeat 2 140 0 3 884 597 177 90 30 chr12 39248024 39248158 -82009372 + B1_Mur4 SINE Alu 3 144 -6 3 884 297 0 0 0 chr12 39248570 39248603 -82008927 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 884 2149 112 3 9 chr12 39248751 39249085 -82008445 - L1Md_F2 LINE L1 -1 6581 6250 3 884 3005 80 10 2 chr12 39249085 39249497 -82008033 + L1_Mm LINE L1 4821 5235 -648 3 884 4967 56 2 3 chr12 39250091 39250718 -82006812 + L1Md_F2 LINE L1 5944 6569 -13 3 884 581 99 0 10 chr12 39250719 39250862 -82006668 + L1Md_F3 LINE L1 6465 6584 0 3 884 2003 146 19 0 chr12 39251199 39251520 -82006010 + ORR1A2 LTR MaLR 1 327 0 3 884 486 369 69 5 chr12 39251697 39251915 -82005615 - MLT1A0 LTR MaLR -4 361 130 3 884 2172 261 97 17 chr12 39252089 39252278 -82005252 - Lx6 LINE L1 -20 7440 7247 3 884 2359 180 103 58 chr12 39252278 39252937 -82004593 - RMER6C LTR ERVK -1 689 1 3 884 2172 261 97 17 chr12 39252937 39253348 -82004182 - Lx6 LINE L1 -214 7246 6792 3 884 198 0 0 0 chr12 39253854 39253876 -82003654 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 884 35410 45 1 3 chr12 39253968 39259423 -81998107 + L1Md_T LINE L1 50 5589 -297 3 884 8496 30 0 0 chr12 39259423 39260419 -81997111 + L1Md_T LINE L1 5590 6585 0 3 884 201 347 0 0 chr12 39261632 39261704 -81995826 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 884 24 0 0 0 chr12 39262323 39262347 -81995183 + AT_rich Low_complexity Low_complexity 1 24 0 3 884 1704 63 37 16 chr12 39262516 39262758 -81994772 + L1Md_F2 LINE L1 6317 6563 -19 3 884 203 0 0 36 chr12 39262761 39262789 -81994741 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 3 884 373 351 37 15 chr12 39264565 39264701 -81992829 + RSINE1 SINE B4 3 141 -24 3 884 369 0 0 0 chr12 39264723 39264764 -81992766 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 3 884 21 0 0 0 chr12 39265327 39265348 -81992182 + AT_rich Low_complexity Low_complexity 1 21 0 3 884 481 0 28 92 chr12 39265592 39265734 -81991796 + (GTTTG)n Simple_repeat Simple_repeat 2 134 0 3 884 1091 49 0 7 chr12 39265734 39265868 -81991662 - B1_Mus1 SINE Alu -8 140 7 3 884 668 251 5 54 chr12 39265868 39265910 -81991620 - ID_B1 SINE B4 -8 216 49 3 884 180 111 0 0 chr12 39266082 39266109 -81991421 + (T)n Simple_repeat Simple_repeat 1 27 0 3 884 500 356 46 60 chr12 39266690 39267103 -81990427 + L1M3e LINE L1 5 411 -6619 3 884 261 285 92 15 chr12 39267278 39267474 -81990056 + L1M3e LINE L1 1849 2059 -4968 3 884 679 248 14 0 chr12 39267516 39267657 -81989873 - B3 SINE B2 -68 148 6 3 884 253 298 98 27 chr12 39267956 39268257 -81989273 + L1M3e LINE L1 2128 2454 -4654 3 884 264 284 23 0 chr12 39268442 39268530 -81989000 + L1MA7 LINE L1 5815 5904 -387 3 884 24 0 0 0 chr12 39268976 39269000 -81988530 + AT_rich Low_complexity Low_complexity 1 24 0 3 884 298 324 28 19 chr12 39269284 39269391 -81988139 - PB1D10 SINE Alu 0 117 10 3 884 1021 157 50 10 chr12 39269635 39269759 -81987771 - URR1A DNA MER1_type -11 215 88 3 884 393 117 0 0 chr12 39269759 39269819 -81987711 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 884 1021 157 50 10 chr12 39269819 39269893 -81987637 - URR1A DNA MER1_type -139 87 10 3 884 515 273 148 11 chr12 39270049 39270238 -81987292 - Lx8 LINE L1 -1106 6367 6153 3 884 218 289 10 49 chr12 39270279 39270381 -81987149 + CT-rich Low_complexity Low_complexity 2 99 0 3 884 1122 308 24 37 chr12 39270459 39270921 -81986609 - Lx7 LINE L1 -502 7194 6739 3 884 712 320 45 31 chr12 39270957 39271315 -81986215 + Lx9 LINE L1 6528 6890 -754 3 884 180 0 0 0 chr12 39271860 39271880 -81985650 + (T)n Simple_repeat Simple_repeat 1 20 0 3 884 21 36 0 0 chr12 39273014 39273042 -81984488 + AT_rich Low_complexity Low_complexity 1 28 0 3 884 332 312 25 102 chr12 39273313 39273470 -81984060 + B2_Mm2 SINE B2 1 145 -50 3 884 866 282 20 5 chr12 39274441 39274573 -81982957 + B4 SINE B4 84 219 -73 3 884 266 0 29 0 chr12 39274573 39274607 -81982923 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 3 884 866 282 20 5 chr12 39274607 39274677 -81982853 + B4 SINE B4 220 288 -4 3 884 1041 225 94 9 chr12 39275125 39275358 -81982172 - Lx6 LINE L1 -11 7449 7197 3 884 180 143 0 0 chr12 39275358 39275400 -81982130 + (A)n Simple_repeat Simple_repeat 1 42 0 3 884 37 0 0 0 chr12 39275698 39275735 -81981795 + AT_rich Low_complexity Low_complexity 1 37 0 3 884 321 135 0 0 chr12 39276752 39276804 -81980726 + (T)n Simple_repeat Simple_repeat 1 52 0 3 884 7232 75 2 9 chr12 39277209 39278646 -81978884 - L1Md_F2 LINE L1 0 6582 5160 3 884 2484 49 0 0 chr12 39278888 39279195 -81978335 - L1Md_T LINE L1 0 6582 6276 3 884 354 232 74 90 chr12 39279637 39279893 -81977637 - Lx7 LINE L1 0 7696 7445 3 884 1411 254 90 27 chr12 39279896 39280373 -81977157 - Lx7 LINE L1 -665 7031 6525 3 884 28 61 0 0 chr12 39281099 39281148 -81976382 + AT_rich Low_complexity Low_complexity 1 49 0 3 884 494 218 5 27 chr12 39281223 39281407 -81976123 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 884 4140 72 7 0 chr12 39286087 39286626 -81970904 + L1_Mus2 LINE L1 6024 6566 0 3 884 255 332 59 85 chr12 39288063 39288521 -81969009 - Lx8 LINE L1 -18 7455 7010 3 884 623 280 28 67 chr12 39288514 39288767 -81968763 - Lx8 LINE L1 -570 6903 6661 3 884 563 271 35 0 chr12 39288950 39289094 -81968436 - Lx8 LINE L1 -1073 6400 6252 3 884 732 11 0 0 chr12 39289274 39289367 -81968163 + L1Md_T LINE L1 6488 6580 -2 3 884 22 0 0 0 chr12 39289609 39289631 -81967899 + AT_rich Low_complexity Low_complexity 1 22 0 3 884 413 315 81 40 chr12 39289656 39289805 -81967725 - B3A SINE B2 -42 156 2 3 884 537 294 14 29 chr12 39290296 39290436 -81967094 - B1_Mur1 SINE Alu 0 149 12 3 884 21 57 0 0 chr12 39291496 39291531 -81965999 + AT_rich Low_complexity Low_complexity 1 35 0 3 884 2543 261 40 160 chr12 39291791 39292902 -81964628 - RMER1A Other Other -7 1023 46 3 884 333 362 52 49 chr12 39293151 39293418 -81964112 + L1MB5 LINE L1 559 826 -6508 3 884 304 338 50 112 chr12 39293599 39293956 -81963574 + L1MB5 LINE L1 1120 1454 -5880 3 884 1759 107 47 1 chr12 39293951 39294273 -81963257 + L1_Mus2 LINE L1 6198 6570 -12 3 884 585 42 0 0 chr12 39294287 39294359 -81963171 + (GGGAA)n Simple_repeat Simple_repeat 4 75 0 3 884 454 336 57 39 chr12 39294497 39294779 -81962751 + L1MB5 LINE L1 1822 2108 -4900 3 884 708 89 0 0 chr12 39294885 39294986 -81962544 + (CA)n Simple_repeat Simple_repeat 1 101 0 3 884 558 256 70 53 chr12 39295315 39295670 -81961860 + L1MB5 LINE L1 2522 2882 -4452 3 884 529 211 48 0 chr12 39295811 39295915 -81961615 + L1VL1 LINE L1 181 289 -6133 3 884 31072 85 3 11 chr12 39295917 39300605 -81956925 + L1Md_F2 LINE L1 936 5585 -298 3 884 7329 80 5 14 chr12 39300606 39301611 -81955919 + L1Md_F2 LINE L1 5587 6582 0 3 884 229 274 111 0 chr12 39301619 39301754 -81955776 + L1MB5 LINE L1 3095 3244 -4090 3 884 643 318 38 51 chr12 39301949 39302241 -81955289 - B4 SINE B4 -4 288 1 3 884 225 271 0 0 chr12 39302558 39302606 -81954924 - ORR1E LTR MaLR -42 317 270 3 884 416 373 50 57 chr12 39302825 39302984 -81954546 + RSINE1 SINE B4 7 164 -1 3 884 264 290 38 57 chr12 39303168 39303274 -81954256 + PB1D10 SINE Alu 2 105 -12 3 884 226 305 27 34 chr12 39303356 39303502 -81954028 + L1MB5 LINE L1 6672 6816 -218 3 884 31 0 0 0 chr12 39304015 39304046 -81953484 + AT_rich Low_complexity Low_complexity 1 31 0 4 884 226 27 0 0 chr12 39304511 39304548 -81952982 + Lx2 LINE L1 6960 6996 -1 4 884 22 0 0 0 chr12 39304554 39304576 -81952954 + AT_rich Low_complexity Low_complexity 1 22 0 4 884 189 74 0 0 chr12 39306485 39306512 -81951018 + (TAAAAA)n Simple_repeat Simple_repeat 1 27 0 4 884 660 79 66 6 chr12 39307242 39307408 -81950122 + (TA)n Simple_repeat Simple_repeat 2 177 0 4 884 351 0 0 0 chr12 39307654 39307693 -81949837 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 884 2801 122 28 15 chr12 39308606 39309073 -81948457 - Lx LINE L1 0 6654 6182 4 884 261 319 67 0 chr12 39309099 39309218 -81948312 - MLT1N2 LTR MaLR -22 540 414 4 884 288 314 0 0 chr12 39309626 39309696 -81947834 - ID4_ SINE ID 0 83 14 4 884 340 100 12 48 chr12 39310470 39310554 -81946976 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 884 554 0 15 0 chr12 39311008 39311074 -81946456 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 884 192 125 0 0 chr12 39311102 39311134 -81946396 + (TAG)n Simple_repeat Simple_repeat 3 34 0 4 884 416 358 81 25 chr12 39311225 39311423 -81946107 - B4A SINE B4 -81 211 3 4 884 393 22 0 0 chr12 39311598 39311644 -81945886 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 884 426 20 0 0 chr12 39312812 39312863 -81944667 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 884 390 254 34 8 chr12 39313963 39314082 -81943448 + ID_B1 SINE B4 100 221 -3 4 884 188 246 0 97 chr12 39314337 39314409 -81943121 - L2c LINE L2 -8 3379 3315 4 884 7608 94 31 7 chr12 39314675 39315785 -81941745 - Lx3_Mus LINE L1 0 7009 5873 4 884 408 40 0 0 chr12 39316374 39316424 -81941106 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 884 579 15 0 0 chr12 39316964 39317032 -81940498 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 884 393 22 0 0 chr12 39317032 39317077 -81940453 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 884 251 358 41 8 chr12 39317265 39317386 -81940144 - MIRc SINE MIR -98 170 46 4 884 344 382 16 16 chr12 39317720 39317845 -81939685 + B1F1 SINE Alu 8 132 -17 4 884 498 0 27 40 chr12 39317850 39317925 -81939605 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 4 884 1065 79 0 0 chr12 39317925 39318064 -81939466 - B1_Mus1 SINE Alu -8 140 2 4 884 2443 274 128 26 chr12 39318081 39318958 -81938572 + Lx9 LINE L1 6462 7427 -217 4 884 1820 203 93 60 chr12 39318958 39319416 -81938114 + RLTR20B3 LTR ERVK 1 471 -106 4 884 477 0 0 0 chr12 39319416 39319469 -81938061 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 884 1820 203 93 60 chr12 39319469 39319514 -81938016 + RLTR20B3 LTR ERVK 472 521 -56 4 884 334 350 86 54 chr12 39319720 39319998 -81937532 + LTR40b LTR ERVL 176 462 0 4 884 351 0 0 0 chr12 39320096 39320135 -81937395 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 885 199 182 45 0 chr12 39321908 39321952 -81935578 - L3 LINE CR1 -2466 2023 1978 4 885 450 0 0 0 chr12 39322176 39322226 -81935304 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 885 180 245 39 39 chr12 39322271 39322322 -81935208 + L3 LINE CR1 3124 3174 -1315 4 885 441 0 0 0 chr12 39322665 39322714 -81934816 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 885 354 23 0 0 chr12 39323616 39323659 -81933871 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 885 504 72 0 0 chr12 39325442 39325511 -81932019 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 885 377 260 110 37 chr12 39325511 39325647 -81931883 - RSINE1 SINE B4 -16 149 4 4 885 297 286 149 0 chr12 39327878 39327983 -81929547 + B1_Mur1 SINE Alu 3 120 -27 4 885 204 40 0 0 chr12 39327984 39328009 -81929521 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 4 885 897 190 0 0 chr12 39328009 39328188 -81929342 + GA-rich Low_complexity Low_complexity 2 180 0 4 885 259 278 106 40 chr12 39329645 39329960 -81927570 - MTEb LTR MaLR 0 379 11 4 885 862 313 20 30 chr12 39331231 39331830 -81925700 - L1M2 LINE L1 -446 5434 4853 4 885 1779 206 68 8 chr12 39331984 39332381 -81925149 - MTC LTR MaLR 0 421 1 4 885 497 81 23 0 chr12 39332792 39332879 -81924651 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 4 885 249 33 0 0 chr12 39332881 39332911 -81924619 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 885 196 258 81 0 chr12 39333349 39333411 -81924119 - L2a LINE L2 0 3426 3360 4 885 23 0 0 0 chr12 39333769 39333792 -81923738 + AT_rich Low_complexity Low_complexity 1 23 0 4 885 4073 135 64 4 chr12 39334442 39335147 -81922383 - Lx2 LINE L1 -2 6995 6249 4 885 276 30 0 0 chr12 39335733 39335766 -81921764 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 885 3159 53 2 10 chr12 39336663 39337060 -81920470 + MTA_Mm LTR MaLR 3 396 0 4 885 3789 217 49 43 chr12 39337301 39338239 -81919291 - Lx5 LINE L1 -51 6999 6056 4 885 211 143 0 23 chr12 39338291 39338334 -81919196 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 885 422 192 0 0 chr12 39338556 39338634 -81918896 - Lx6 LINE L1 -6 7454 7377 4 885 2247 271 52 31 chr12 39338650 39339304 -81918226 - Lx9 LINE L1 -616 7028 6361 4 885 390 279 0 16 chr12 39339441 39339565 -81917965 - Lx7 LINE L1 -16 7680 7559 4 885 3344 117 2 15 chr12 39340806 39340929 -81916601 - Lx LINE L1 -5 6649 6530 4 885 3072 138 112 50 chr12 39340929 39341636 -81915894 + RMER17A LTR ERVK 1 751 0 4 885 3344 117 2 15 chr12 39341636 39342032 -81915498 - Lx LINE L1 -125 6529 6137 4 885 495 332 9 31 chr12 39342224 39342448 -81915082 - ID_B1 SINE B4 -4 220 2 4 885 261 0 0 0 chr12 39342648 39342677 -81914853 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 885 28 29 0 0 chr12 39343122 39343157 -81914373 + AT_rich Low_complexity Low_complexity 1 35 0 4 885 689 225 0 0 chr12 39343193 39343322 -81914208 - B3 SINE B2 -86 130 2 4 885 569 283 7 7 chr12 39343519 39343658 -81913872 - B1_Mur4 SINE Alu -1 149 11 4 885 330 26 0 0 chr12 39344441 39344480 -81913050 + (CATA)n Simple_repeat Simple_repeat 2 40 0 4 885 1531 246 32 41 chr12 39346361 39346773 -81910757 + MTD LTR MaLR 12 419 0 4 885 6866 61 20 34 chr12 39346977 39347922 -81909608 - L1_Mus2 LINE L1 0 6566 5635 4 885 23 0 0 0 chr12 39348001 39348024 -81909506 + AT_rich Low_complexity Low_complexity 1 23 0 4 885 396 0 0 0 chr12 39348169 39348213 -81909317 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 885 749 138 12 30 chr12 39348213 39348378 -81909152 + GA-rich Low_complexity Low_complexity 4 165 0 4 885 384 111 0 0 chr12 39348393 39348456 -81909074 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 885 1888 163 50 55 chr12 39348845 39349267 -81908263 - BGLII_Mus LTR ERVK 0 422 3 4 885 231 36 0 0 chr12 39350004 39350032 -81907498 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 4 885 330 103 59 0 chr12 39350038 39350106 -81907424 + CT-rich Low_complexity Low_complexity 2 73 0 4 885 337 267 129 29 chr12 39350112 39350251 -81907279 - HAL1-3A_ME LINE L1 -422 2436 2284 4 885 595 213 58 0 chr12 39350931 39351086 -81906444 + MER58B DNA MER1_type 50 213 -128 4 885 354 23 0 0 chr12 39351336 39351379 -81906151 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 885 495 0 0 0 chr12 39352398 39352453 -81905077 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 885 191 360 93 44 chr12 39352492 39352675 -81904855 + MIRb SINE MIR 8 199 -69 4 885 363 335 77 73 chr12 39352720 39353007 -81904523 - ORR1E LTR MaLR -11 348 61 4 885 524 339 18 6 chr12 39353700 39353869 -81903661 - Lx8 LINE L1 -1080 6393 6223 4 885 616 87 29 0 chr12 39353906 39354010 -81903520 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 4 885 229 321 0 0 chr12 39354109 39354162 -81903368 - B1F1 SINE Alu -85 64 12 4 885 216 365 32 0 chr12 39354237 39354300 -81903230 - B1F1 SINE Alu -84 65 1 4 885 21 0 0 0 chr12 39356078 39356099 -81901431 + AT_rich Low_complexity Low_complexity 1 21 0 4 885 22 0 0 0 chr12 39360580 39360602 -81896928 + AT_rich Low_complexity Low_complexity 1 22 0 4 885 573 290 0 7 chr12 39362841 39362987 -81894543 + B1_Mur1 SINE Alu 4 148 -1 4 885 813 249 13 39 chr12 39363302 39363532 -81893998 - URR1A DNA MER1_type -1 225 2 4 885 380 296 108 40 chr12 39363591 39363739 -81893791 - RSINE1 SINE B4 -6 159 2 4 885 3291 141 3 15 chr12 39364011 39364915 -81892615 + L1Md_F LINE L1 574 1473 -2344 4 885 426 36 0 0 chr12 39364965 39365021 -81892509 + L1_Mus2 LINE L1 6511 6566 0 4 885 399 294 65 81 chr12 39365223 39365408 -81892122 - MTE-int LTR MaLR -1373 207 26 4 885 335 314 37 75 chr12 39365503 39365704 -81891826 - MTE2a LTR MaLR -124 255 75 4 885 628 272 242 19 chr12 39367130 39367631 -81889899 - Lx7 LINE L1 -1987 5709 5086 4 885 1475 173 0 11 chr12 39367641 39367904 -81889626 - Lx2 LINE L1 -6 6991 6732 4 885 1009 60 8 0 chr12 39368249 39368382 -81889148 + B1_Mus2 SINE Alu 12 145 -2 4 885 191 32 0 61 chr12 39368383 39368416 -81889114 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 4 885 464 338 78 48 chr12 39368554 39368887 -81888643 - ORR1E LTR MaLR -4 355 13 4 885 459 0 0 0 chr12 39369255 39369306 -81888224 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 885 633 320 54 42 chr12 39372158 39372563 -81884967 + L1MA6 LINE L1 5851 6260 -40 4 885 409 327 0 0 chr12 39372603 39372707 -81884823 + RSINE1 SINE B4 6 109 -56 4 885 4754 45 0 0 chr12 39372729 39373305 -81884225 + L1Md_T LINE L1 6006 6581 -1 4 885 204 188 45 45 chr12 39374276 39374343 -81883187 + A-rich Low_complexity Low_complexity 2 68 0 5 885 611 286 31 35 chr12 39375308 39375566 -81881964 + Lx8 LINE L1 5625 5917 -1727 5 885 1819 306 41 13 chr12 39375998 39376634 -81880896 + Lx8 LINE L1 6200 6853 -620 5 885 825 164 19 44 chr12 39376637 39376796 -81880734 + Lx3C LINE L1 6770 6924 -52 5 885 3661 179 24 6 chr12 39376853 39377512 -81880018 - Lx4B LINE L1 -32 7026 6356 5 885 4162 165 21 13 chr12 39377516 39378422 -81879108 + Lx4B LINE L1 5421 6350 -708 5 885 7409 88 19 8 chr12 39378436 39379465 -81878065 - L1_Mus4 LINE L1 -8 6628 5588 5 885 6774 160 8 28 chr12 39379484 39379813 -81877717 + L1_Mm LINE L1 4355 4660 -1223 5 885 4595 101 0 0 chr12 39379813 39380445 -81877085 - L1_Mus2 LINE L1 -2 6564 5933 5 885 6774 160 8 28 chr12 39380445 39380984 -81876546 + L1_Mm LINE L1 4661 5202 -681 5 885 2441 67 195 146 chr12 39380984 39381472 -81876058 - RLTR1B LTR ERV1 0 512 1 5 885 6774 160 8 28 chr12 39381472 39381850 -81875680 + L1_Mm LINE L1 5203 5577 -306 5 885 256 271 29 0 chr12 39381958 39382028 -81875502 + ORR1B2 LTR MaLR 1 72 -295 5 885 1070 148 6 6 chr12 39382036 39382213 -81875317 - L1_Mur2 LINE L1 -281 5596 5420 5 885 290 200 18 0 chr12 39382216 39382271 -81875259 + Lx4B LINE L1 6356 6411 -647 5 885 21 36 0 0 chr12 39382286 39382314 -81875216 + AT_rich Low_complexity Low_complexity 1 28 0 5 885 24 0 0 0 chr12 39382771 39382795 -81874735 + AT_rich Low_complexity Low_complexity 1 24 0 5 885 240 266 0 37 chr12 39384256 39384338 -81873192 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 5 885 450 0 0 0 chr12 39384352 39384402 -81873128 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 885 1843 162 35 67 chr12 39384583 39384954 -81872576 - RLTR18 LTR ERVK -9 607 249 5 885 8798 165 45 13 chr12 39384985 39386646 -81870884 - RMER6-int LTR ERVK -975 2202 489 5 885 28 0 0 0 chr12 39386702 39386730 -81870800 + AT_rich Low_complexity Low_complexity 1 28 0 5 885 3666 38 9 9 chr12 39387110 39387565 -81869965 + L1Md_F2 LINE L1 6116 6570 -12 5 885 424 345 30 12 chr12 39388716 39388883 -81868647 - MER58A DNA MER1_type -41 183 14 5 885 500 310 7 7 chr12 39388896 39389042 -81868488 - MTEa LTR MaLR -233 146 1 5 885 678 100 0 0 chr12 39389078 39389178 -81868352 + (GGGA)n Simple_repeat Simple_repeat 4 103 0 5 885 374 386 81 6 chr12 39389202 39389374 -81868156 + B4A SINE B4 10 194 -98 5 885 492 305 17 0 chr12 39389366 39389484 -81868046 + B3A SINE B2 15 134 -64 5 885 608 329 58 26 chr12 39389737 39390049 -81867481 - RLTR23 LTR ERV1 0 430 109 5 885 412 314 41 8 chr12 39390078 39390200 -81867330 - B3A SINE B2 -71 127 2 5 885 2312 213 47 2 chr12 39390574 39391021 -81866509 + Lx6 LINE L1 6825 7291 -169 5 885 22 0 0 0 chr12 39391564 39391586 -81865944 + AT_rich Low_complexity Low_complexity 1 22 0 5 885 447 352 12 24 chr12 39391610 39391776 -81865754 - RSINE1 SINE B4 0 165 2 5 885 308 336 68 14 chr12 39391947 39392095 -81865435 - MLT1F1 LTR MaLR -30 539 384 5 885 23 33 0 0 chr12 39392481 39392511 -81865019 + AT_rich Low_complexity Low_complexity 1 30 0 5 885 585 0 0 0 chr12 39393393 39393458 -81864072 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 5 885 325 219 46 23 chr12 39394642 39394773 -81862757 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 5 885 1441 252 40 52 chr12 39394799 39395221 -81862309 + MTD LTR MaLR 3 419 0 5 885 2107 212 109 59 chr12 39395707 39396249 -81861281 + RMER4B LTR ERVK 17 585 0 5 885 4713 149 52 11 chr12 39397169 39397985 -81859545 + Lx4A LINE L1 5738 6586 -472 5 885 507 216 20 60 chr12 39398306 39398462 -81859068 - B1_Mur2 SINE Alu -1 148 5 5 885 220 282 70 124 chr12 39398307 39398493 -81859037 - B4 SINE B4 -69 223 48 5 885 5342 212 55 43 chr12 39398708 39400955 -81856575 - Lx5 LINE L1 -11 7039 4741 5 885 15898 208 23 63 chr12 39400955 39403377 -81854153 - L1_Mur2 LINE L1 -585 5295 3041 5 885 1256 79 0 6 chr12 39403377 39403556 -81853974 + (TCC)n Simple_repeat Simple_repeat 3 180 0 5 885 15898 208 23 63 chr12 39403556 39404566 -81852964 - L1_Mur2 LINE L1 -2840 3040 2058 5 885 342 0 0 0 chr12 39404566 39404604 -81852926 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 885 15898 197 27 40 chr12 39404604 39405728 -81851802 - L1_Mur2 LINE L1 -3823 2057 896 5 885 548 65 0 13 chr12 39406761 39406839 -81850691 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 885 378 0 0 0 chr12 39406846 39406888 -81850642 + (TAGG)n Simple_repeat Simple_repeat 1 42 0 5 885 343 311 66 7 chr12 39407217 39407369 -81850161 + MIR SINE MIR 97 257 -5 5 885 25 36 0 52 chr12 39407383 39407441 -81850089 + AT_rich Low_complexity Low_complexity 1 55 0 5 885 28 0 0 0 chr12 39407495 39407523 -81850007 + AT_rich Low_complexity Low_complexity 1 28 0 5 885 256 313 87 27 chr12 39407558 39407742 -81849788 - L2c LINE L2 0 3387 3193 5 885 712 318 70 53 chr12 39408517 39409183 -81848347 - Tigger12c DNA MER2_type -37 754 76 5 885 267 197 39 13 chr12 39410123 39410200 -81847330 - Lx9 LINE L1 -4 7640 7562 5 885 518 261 57 14 chr12 39410287 39410427 -81847103 - B1_Mur1 SINE Alu -2 147 2 5 885 235 337 126 48 chr12 39410855 39411126 -81846404 + B4A SINE B4 1 292 0 5 885 7674 76 3 0 chr12 39411323 39412334 -81845196 - L1_Mm LINE L1 -343 5540 4527 5 885 1412 60 16 0 chr12 39412334 39412517 -81845013 + L1Md_F2 LINE L1 5732 5917 -665 5 885 739 55 0 18 chr12 39412522 39412633 -81844897 + L1Md_F2 LINE L1 6462 6570 -12 5 885 342 91 13 25 chr12 39412772 39412851 -81844679 + (CAAAAA)n Simple_repeat Simple_repeat 2 79 0 5 885 23 0 0 0 chr12 39413501 39413524 -81844006 + AT_rich Low_complexity Low_complexity 1 23 0 5 885 640 283 76 22 chr12 39413605 39413829 -81843701 + Lx8 LINE L1 6574 6809 -664 5 885 582 276 14 50 chr12 39414151 39414372 -81843158 - B3 SINE B2 -3 213 1 5 885 2101 93 13 0 chr12 39414550 39414851 -81842679 - L1_Mm LINE L1 -2283 3600 3296 5 885 3014 71 24 17 chr12 39414853 39415268 -81842262 + L1_Mus2 LINE L1 6143 6560 -6 5 885 240 254 14 29 chr12 39415437 39415506 -81842024 + MLT1A1 LTR MaLR 322 389 -19 5 885 447 19 0 0 chr12 39415613 39415665 -81841865 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 885 403 283 9 22 chr12 39415706 39415832 -81841698 - PB1D9 SINE Alu -22 127 9 5 885 260 310 0 0 chr12 39415838 39415909 -81841621 - B4A SINE B4 -61 231 161 5 885 832 266 5 14 chr12 39416469 39416686 -81840844 + B3 SINE B2 2 216 0 5 885 252 324 36 45 chr12 39416727 39416837 -81840693 + MLT1A0 LTR MaLR 6 114 -260 5 885 16335 96 7 12 chr12 39416891 39419739 -81837791 + Lx3A LINE L1 3542 6369 -612 5 885 431 107 0 0 chr12 39419725 39419781 -81837749 - Lx LINE L1 -206 6448 6393 5 885 642 281 30 84 chr12 39419786 39420168 -81837362 - L1M2 LINE L1 -555 5628 5269 5 885 2815 65 31 6 chr12 39420619 39421039 -81836491 + MT-int LTR MaLR 383 754 -344 5 885 357 43 0 0 chr12 39422684 39422731 -81834799 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 5 885 598 337 27 6 chr12 39423504 39423841 -81833689 - L1MDa LINE L1 -4956 1677 1334 5 885 288 348 32 38 chr12 39424173 39424358 -81833172 - L2a LINE L2 -183 3243 3060 5 885 357 329 58 13 chr12 39425012 39425166 -81832364 - MIRb SINE MIR -40 228 68 5 885 525 345 25 59 chr12 39425585 39425626 -81831904 - ID_B1 SINE B4 -11 213 180 5 885 3230 170 75 23 chr12 39425626 39426311 -81831219 - RMER6D LTR ERVK 0 720 1 5 885 525 345 25 59 chr12 39426311 39426472 -81831058 - ID_B1 SINE B4 -45 179 18 5 885 23 54 0 0 chr12 39427367 39427404 -81830126 + AT_rich Low_complexity Low_complexity 1 37 0 5 885 3081 40 3 3 chr12 39428265 39428696 -81828834 - L1Md_F2 LINE L1 0 6582 6191 5 885 720 308 80 13 chr12 39429731 39429968 -81827562 + B4A SINE B4 32 284 -8 5 885 343 64 106 0 chr12 39430064 39430111 -81827419 + HAL1-3A_ME LINE L1 1977 2028 -830 5 885 324 70 0 0 chr12 39430215 39430258 -81827272 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 885 324 0 0 0 chr12 39430492 39430528 -81827002 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 885 246 253 44 33 chr12 39430539 39430629 -81826901 + MLT1A0 LTR MaLR 1 91 -274 5 885 896 104 7 14 chr12 39430641 39430787 -81826743 + L1Md_F2 LINE L1 6426 6570 -12 5 885 669 213 22 7 chr12 39430819 39430956 -81826574 + B1_Mur4 SINE Alu 2 140 -10 5 885 497 320 20 112 chr12 39431019 39431269 -81826261 + MLT1A0 LTR MaLR 164 390 0 5 885 1673 158 56 53 chr12 39432717 39433037 -81824493 - ORR1A4 LTR MaLR -8 321 1 5 885 201 329 53 0 chr12 39433465 39433541 -81823989 - L2a LINE L2 -2 3424 3345 5 885 459 380 41 0 chr12 39433876 39434071 -81823459 - MER44B DNA MER2_type -208 342 140 5 885 319 322 40 73 chr12 39434077 39434201 -81823329 + B4 SINE B4 79 198 -94 5 885 611 229 0 0 chr12 39434101 39434210 -81823320 + B1_Mur2 SINE Alu 10 118 -31 5 885 267 54 0 0 chr12 39434240 39434277 -81823253 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 5 885 307 296 61 10 chr12 39434300 39434399 -81823131 + PB1D10 SINE Alu 14 117 0 5 885 1074 115 0 0 chr12 39435198 39435363 -81822167 + (GAAA)n Simple_repeat Simple_repeat 3 167 0 5 885 474 157 0 0 chr12 39435363 39435446 -81822084 + GA-rich Low_complexity Low_complexity 1 83 0 5 885 254 289 36 63 chr12 39435466 39435577 -81821953 - MER44B DNA MER2_type -433 117 10 5 885 405 0 0 0 chr12 39435639 39435684 -81821846 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 5 885 251 327 48 9 chr12 39435901 39436006 -81821524 + L1ME3B LINE L1 5534 5642 -598 5 885 488 271 68 11 chr12 39436123 39436313 -81821217 + L1ME3B LINE L1 5788 5988 -252 5 885 413 304 29 0 chr12 39436429 39436567 -81820963 + B1F SINE Alu 1 142 -7 5 885 231 295 0 0 chr12 39437302 39437380 -81820150 + (TAG)n Simple_repeat Simple_repeat 1 78 0 5 885 444 206 29 0 chr12 39437447 39437549 -81819981 - RCHARR1 DNA MER1_type -143 831 727 5 885 279 0 0 0 chr12 39438078 39438109 -81819421 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 885 348 161 0 0 chr12 39438186 39438248 -81819282 + GA-rich Low_complexity Low_complexity 3 64 0 5 885 942 144 0 0 chr12 39438248 39438428 -81819102 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 885 1516 196 30 79 chr12 39438954 39439022 -81818508 - ORR1C2 LTR MaLR 0 384 327 6 885 201 39 0 0 chr12 39439022 39439048 -81818482 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 885 1516 196 30 79 chr12 39439048 39439383 -81818147 - ORR1C2 LTR MaLR -58 326 1 6 885 281 300 0 11 chr12 39439423 39439514 -81818016 - LTR33B LTR ERVL 0 503 414 6 885 258 352 117 0 chr12 39439685 39439847 -81817683 - LTR33B LTR ERVL -314 189 9 6 885 22 0 0 0 chr12 39440134 39440156 -81817374 + AT_rich Low_complexity Low_complexity 1 22 0 6 885 210 37 0 0 chr12 39440158 39440185 -81817345 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 885 656 212 7 49 chr12 39440185 39440329 -81817201 - B1_Mur2 SINE Alu -10 139 2 6 885 263 302 31 0 chr12 39440490 39440586 -81816944 - RMER4A LTR ERVK -360 106 8 6 885 263 150 0 16 chr12 39440592 39440653 -81816877 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 6 885 345 327 143 0 chr12 39441873 39442041 -81815489 + B3A SINE B2 1 192 -6 6 885 666 271 28 38 chr12 39442404 39442615 -81814915 + B3 SINE B2 3 211 -5 6 885 31 0 0 0 chr12 39442762 39442793 -81814737 + AT_rich Low_complexity Low_complexity 1 31 0 6 885 298 293 0 12 chr12 39442926 39443009 -81814521 + ID4 SINE ID 2 83 0 6 885 21 0 0 0 chr12 39443778 39443799 -81813731 + AT_rich Low_complexity Low_complexity 1 21 0 6 885 310 294 0 14 chr12 39443810 39443879 -81813651 + RSINE1 SINE B4 12 79 -86 6 885 554 222 123 6 chr12 39444512 39444667 -81812863 - MTE2a LTR MaLR 0 379 207 6 885 429 302 96 45 chr12 39444670 39444826 -81812704 + RSINE1 SINE B4 1 164 -1 6 885 237 108 0 0 chr12 39444851 39444888 -81812642 + (GGA)n Simple_repeat Simple_repeat 2 38 0 6 885 253 235 28 56 chr12 39444912 39444984 -81812546 - MTE2a LTR MaLR -163 216 147 6 885 3622 214 29 15 chr12 39445511 39446841 -81810689 + L1_Mur2 LINE L1 868 2157 -3723 6 885 9111 223 79 86 chr12 39446843 39447796 -81809734 + Lx5 LINE L1 1274 2045 -3841 6 885 234 0 0 0 chr12 39447796 39447822 -81809708 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 885 9111 223 79 86 chr12 39447822 39449441 -81808089 + Lx5 LINE L1 2046 3653 -2233 6 885 225 0 0 0 chr12 39449441 39449466 -81808064 + (CAA)n Simple_repeat Simple_repeat 1 25 0 6 885 9111 223 79 86 chr12 39449466 39450454 -81807076 + Lx5 LINE L1 3654 4808 -1078 6 885 6159 146 0 35 chr12 39450465 39450782 -81806748 + Lx5 LINE L1 5433 5754 -1296 6 885 1003 156 0 40 chr12 39450782 39450982 -81806548 + B2_Mm2 SINE B2 3 194 -1 6 885 6159 199 28 50 chr12 39450982 39452310 -81805220 + Lx5 LINE L1 5755 7050 0 6 110 8521 176 45 32 chr12 39452323 39453376 -81804154 + L1_Mur2 LINE L1 2151 3173 -2707 6 886 237 33 0 0 chr12 39453376 39453406 -81804124 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 886 8521 176 45 32 chr12 39453406 39454418 -81803112 + L1_Mur2 LINE L1 3174 4241 -1639 6 886 2444 307 54 57 chr12 39454410 39455623 -81801907 + Lx5 LINE L1 5811 7020 -30 6 886 925 365 34 9 chr12 39455775 39456214 -81801316 + RMER1C Other Other 447 896 -446 6 886 3648 68 39 31 chr12 39456330 39456874 -81800656 + LTRIS2 LTR ERV1 17 564 0 6 886 1389 250 110 76 chr12 39456874 39457724 -81799806 - RMER17A2 LTR ERVK -184 724 1 6 886 1164 68 18 18 chr12 39457730 39457896 -81799634 + BGLII LTR ERVK 256 421 0 6 886 189 0 0 0 chr12 39458105 39458126 -81799404 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 6 886 552 81 0 0 chr12 39458317 39458404 -81799126 + (TC)n Simple_repeat Simple_repeat 1 87 0 6 886 286 235 0 0 chr12 39459189 39459240 -81798290 + B1_Mus2 SINE Alu 35 85 -62 6 886 698 187 16 249 chr12 39459228 39459549 -81797981 - RMER15 LTR ERVL -311 264 19 6 886 2182 75 10 7 chr12 39459653 39459960 -81797570 + L1_Mus3 LINE L1 6325 6632 -6 6 886 2732 66 37 5 chr12 39459966 39460347 -81797183 + L1Md_F2 LINE L1 6169 6561 -21 6 886 1589 252 56 43 chr12 39460655 39461069 -81796461 + MTD LTR MaLR 1 419 0 6 886 930 102 51 0 chr12 39461176 39461313 -81796217 + B1_Mus2 SINE Alu 2 145 -2 6 886 327 63 15 31 chr12 39461313 39461378 -81796152 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 6 886 618 309 127 3 chr12 39461949 39462267 -81795263 - Lx5 LINE L1 -616 6844 6450 6 886 273 57 0 0 chr12 39462267 39462302 -81795228 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 886 446 319 121 0 chr12 39462302 39462421 -81795109 - Lx5 LINE L1 -709 6751 6615 6 886 260 270 0 0 chr12 39462550 39462613 -81794917 + (CATA)n Simple_repeat Simple_repeat 3 65 0 6 886 526 99 45 15 chr12 39462613 39462746 -81794784 + (TAGA)n Simple_repeat Simple_repeat 1 137 0 6 886 469 279 16 0 chr12 39462773 39462902 -81794628 + Lx8 LINE L1 6984 7114 -359 6 886 438 53 0 0 chr12 39463117 39463174 -81794356 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 886 468 48 0 0 chr12 39463174 39463236 -81794294 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 886 248 300 14 0 chr12 39464507 39464577 -81792953 + B1F2 SINE Alu 66 136 -13 6 886 770 151 0 7 chr12 39465484 39465624 -81791906 + GA-rich Low_complexity Low_complexity 4 142 0 6 886 226 0 0 56 chr12 39466065 39466101 -81791429 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 6 886 2146 41 8 0 chr12 39466156 39466423 -81791107 - L1Md_A LINE L1 -2 6580 6312 6 886 1102 255 107 34 chr12 39466931 39467589 -81789941 + L1MA9 LINE L1 5255 5972 -340 6 886 264 380 127 57 chr12 39470337 39470652 -81786878 + MLT1H LTR MaLR 118 454 -95 6 886 24 77 0 0 chr12 39470722 39470774 -81786756 + AT_rich Low_complexity Low_complexity 1 52 0 6 886 427 282 116 0 chr12 39471189 39471370 -81786160 - Lx8 LINE L1 -350 7123 6922 6 886 2168 155 47 16 chr12 39471893 39472280 -81785250 + MTB_Mm LTR MaLR 1 399 -8 6 886 207 259 0 0 chr12 39472415 39472473 -81785057 + GA-rich Low_complexity Low_complexity 1 58 0 6 886 1343 57 6 0 chr12 39472473 39472650 -81784880 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 6 886 182 62 0 30 chr12 39473058 39473091 -81784439 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 6 886 3128 18 2 112 chr12 39473415 39473853 -81783677 - RLTR10 LTR ERVK 0 390 1 6 886 8235 28 0 0 chr12 39473855 39474850 -81782680 - RLTR10-int LTR ERVK -3 1984 990 6 886 4773 43 22 2 chr12 39474927 39475963 -81781567 - RLTR10-int LTR ERVK -999 988 3 6 886 3115 21 2 112 chr12 39475965 39476403 -81781127 - RLTR10 LTR ERVK 0 390 1 6 886 22 0 0 0 chr12 39477438 39477460 -81780070 + AT_rich Low_complexity Low_complexity 1 22 0 6 886 405 328 80 0 chr12 39478109 39478234 -81779296 - ID_B1 SINE B4 -1 223 89 6 886 286 280 20 13 chr12 39478767 39478882 -81778648 - L2a LINE L2 -338 3037 2924 6 886 352 362 159 29 chr12 39478896 39479041 -81778489 + MLT1F2 LTR MaLR 1 164 -396 6 886 207 0 0 0 chr12 39479041 39479064 -81778466 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 886 352 362 159 29 chr12 39479064 39479157 -81778373 + MLT1F2 LTR MaLR 165 269 -291 6 886 335 360 0 0 chr12 39479557 39479643 -81777887 + PB1D10 SINE Alu 6 91 -26 6 886 200 352 88 46 chr12 39479681 39479964 -81777566 - L2a LINE L2 -647 2772 2478 6 886 678 111 0 69 chr12 39480042 39480158 -81777372 + Lx LINE L1 6341 6448 -206 6 886 372 81 0 0 chr12 39480158 39480220 -81777310 + Lx LINE L1 6591 6652 -2 6 886 477 34 0 0 chr12 39480406 39480465 -81777065 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 6 886 587 186 9 0 chr12 39480468 39480581 -81776949 - B1_Mus2 SINE Alu 0 147 34 6 886 293 343 6 108 chr12 39480616 39480773 -81776757 - B4 SINE B4 -124 168 28 6 886 310 292 158 0 chr12 39481498 39481618 -81775912 - ID_B1 SINE B4 -18 206 68 6 886 425 19 0 18 chr12 39482623 39482678 -81774852 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 886 261 175 0 60 chr12 39482726 39482793 -81774737 + MER5A1 DNA MER1_type 93 155 -11 6 886 393 189 105 0 chr12 39483353 39483448 -81774082 - PB1D10 SINE Alu -7 110 6 6 886 241 213 66 160 chr12 39483397 39483503 -81774027 - B4A SINE B4 -144 148 53 6 886 315 0 0 0 chr12 39483571 39483606 -81773924 + (A)n Simple_repeat Simple_repeat 1 35 0 6 886 2060 180 40 0 chr12 39484061 39484438 -81773092 + ORR1B1 LTR MaLR 1 392 -2 6 886 6223 109 38 28 chr12 39484513 39485835 -81771695 + Lx LINE L1 5289 6633 -21 6 886 464 95 27 0 chr12 39485835 39485909 -81771621 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 6 886 604 226 7 14 chr12 39486103 39486242 -81771288 + B1_Mur1 SINE Alu 5 142 -7 6 886 189 0 0 0 chr12 39486245 39486266 -81771264 + (TTTAA)n Simple_repeat Simple_repeat 2 22 0 6 886 263 238 57 63 chr12 39486303 39486436 -81771094 + Lx7 LINE L1 6066 6193 -1280 6 886 942 48 0 0 chr12 39486592 39486716 -81770814 + (TG)n Simple_repeat Simple_repeat 2 125 0 6 886 334 241 100 33 chr12 39487469 39487559 -81769971 - PB1D7 SINE Alu -11 109 14 6 886 3629 181 122 19 chr12 39487620 39488390 -81769140 - RMER19B LTR ERVK -5 897 79 6 886 325 336 28 18 chr12 39488968 39489077 -81768453 + PB1D7 SINE Alu 3 112 -8 6 886 260 373 48 21 chr12 39489119 39489264 -81768266 + MamGypLTR1a LTR Gypsy 595 743 -41 6 886 215 329 0 38 chr12 39490036 39490115 -81767415 - B3 SINE B2 -101 115 40 6 886 393 200 242 0 chr12 39490395 39490515 -81767015 + B1_Mur3 SINE Alu 1 149 0 6 886 555 283 71 18 chr12 39490693 39490894 -81766636 + B3A SINE B2 2 214 -2 6 886 310 161 54 0 chr12 39491148 39491241 -81766289 + (TA)n Simple_repeat Simple_repeat 2 99 0 6 886 395 288 163 0 chr12 39492555 39492708 -81764822 + B3A SINE B2 3 180 -18 6 886 222 37 0 0 chr12 39493023 39493050 -81764480 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 886 263 369 18 18 chr12 39493299 39493412 -81764118 + ID_B1 SINE B4 86 198 -26 6 886 234 310 0 27 chr12 39493383 39493456 -81764074 + B1_Mur1 SINE Alu 63 133 -16 6 886 255 266 31 0 chr12 39493519 39493583 -81763947 + B1F SINE Alu 61 126 -23 6 886 224 308 0 15 chr12 39493550 39493616 -81763914 + B1_Mus2 SINE Alu 63 127 -20 6 886 419 256 25 72 chr12 39493913 39494145 -81763385 - RLTR11B LTR ERVK -81 447 244 6 886 896 253 50 43 chr12 39494125 39494406 -81763124 - RLTR11B LTR ERVK -168 285 3 6 886 285 51 0 0 chr12 39494729 39494768 -81762762 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 6 886 628 211 29 22 chr12 39494788 39494924 -81762606 + B1_Mus1 SINE Alu 2 138 -10 6 886 458 262 9 0 chr12 39495366 39495473 -81762057 - L1_Mur3 LINE L1 -293 5587 5480 6 886 807 289 9 9 chr12 39495598 39495818 -81761712 - ID_B1 SINE B4 0 224 5 6 886 309 245 26 21 chr12 39495895 39496000 -81761530 + ID4 SINE ID 24 129 -23 7 886 799 301 9 19 chr12 39496255 39496465 -81761065 - B4 SINE B4 -83 209 2 7 886 309 237 27 134 chr12 39496614 39496726 -81760804 + MT2B LTR ERVL 153 252 -349 7 886 536 311 7 0 chr12 39496638 39496773 -81760757 + ID_B1 SINE B4 89 224 0 7 886 2873 188 11 32 chr12 39497685 39498310 -81759220 - Lx2B LINE L1 -182 6818 6207 7 886 429 147 0 0 chr12 39498790 39498858 -81758672 + B1_Mm SINE Alu 80 147 0 7 886 22 0 0 0 chr12 39498858 39498880 -81758650 + AT_rich Low_complexity Low_complexity 1 22 0 7 886 453 293 65 36 chr12 39499072 39499210 -81758320 + ID_B1 SINE B4 82 223 -1 7 886 255 315 11 0 chr12 39499216 39499308 -81758222 + GA-rich Low_complexity Low_complexity 2 94 0 7 886 207 203 0 0 chr12 39500545 39500604 -81756926 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 886 21 0 0 0 chr12 39501131 39501152 -81756378 + AT_rich Low_complexity Low_complexity 1 21 0 2 886 405 198 20 65 chr12 39501152 39501294 -81756236 + MTC LTR MaLR 225 377 -44 3 886 402 250 130 62 chr12 39501318 39501510 -81756020 - B3 SINE B2 -11 205 1 4 886 230 130 16 143 chr12 39501511 39501574 -81755956 + MTC LTR MaLR 351 405 -14 3 886 356 292 81 7 chr12 39502220 39502368 -81755162 - Charlie8 DNA MER1_type -2238 190 32 5 886 23 92 0 0 chr12 39503178 39503243 -81754287 + AT_rich Low_complexity Low_complexity 1 65 0 6 886 379 254 90 30 chr12 39503249 39503269 -81754261 - B1_Mm SINE Alu -2 145 127 7 886 216 0 0 0 chr12 39503269 39503293 -81754237 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 886 406 248 107 27 chr12 39503293 39503406 -81754124 - B1F2 SINE Alu -21 126 4 7 886 245 315 49 91 chr12 39503406 39503442 -81754088 - MT2B LTR ERVL -441 160 131 9 886 374 251 64 23 chr12 39503477 39503648 -81753882 - Lx2B LINE L1 -4 6996 6819 1 886 333 0 0 0 chr12 39503902 39503939 -81753591 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 886 237 33 0 0 chr12 39505055 39505085 -81752445 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 886 189 107 0 0 chr12 39508060 39508088 -81749442 + (A)n Simple_repeat Simple_repeat 1 28 0 1 886 342 0 0 0 chr12 39510745 39510783 -81746747 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 886 299 176 32 32 chr12 39511300 39511394 -81746136 + T-rich Low_complexity Low_complexity 2 95 0 1 886 380 123 0 14 chr12 39513867 39513941 -81743589 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 886 24 0 0 0 chr12 39514323 39514347 -81743183 + AT_rich Low_complexity Low_complexity 1 24 0 1 886 238 333 0 31 chr12 39514964 39515060 -81742470 + CT-rich Low_complexity Low_complexity 5 97 0 1 886 210 114 22 22 chr12 39516922 39516967 -81740563 + (TTATA)n Simple_repeat Simple_repeat 2 46 0 1 886 848 231 71 5 chr12 39517032 39517228 -81740302 - B3 SINE B2 -7 209 1 2 886 703 196 42 28 chr12 39517296 39517438 -81740092 - B1_Mus1 SINE Alu 0 148 5 2 886 848 167 14 0 chr12 39517742 39517880 -81739650 - B1_Mur4 SINE Alu -7 143 4 2 886 219 114 0 0 chr12 39517909 39517944 -81739586 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 886 413 292 16 16 chr12 39518493 39518615 -81738915 - B1F SINE Alu -10 139 18 2 886 252 0 0 0 chr12 39518659 39518687 -81738843 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2 886 211 218 0 52 chr12 39519832 39519890 -81737640 + T-rich Low_complexity Low_complexity 3 57 0 2 886 408 335 51 43 chr12 39520569 39520803 -81736727 - Tigger7 DNA MER2_type -3 2488 2253 2 886 302 278 83 44 chr12 39521329 39521510 -81736020 - L1MB3 LINE L1 0 6183 5996 2 886 959 161 119 10 chr12 39521651 39521845 -81735685 - Lx5 LINE L1 -409 6641 6427 2 886 1289 228 74 59 chr12 39521842 39522234 -81735296 + Lx5 LINE L1 6653 7050 0 2 886 249 303 22 0 chr12 39522653 39522742 -81734788 + Charlie5 DNA MER1_type 22 112 -2512 3 886 22 0 0 0 chr12 39523010 39523032 -81734498 + AT_rich Low_complexity Low_complexity 1 22 0 3 886 567 225 15 30 chr12 39523899 39524032 -81733498 - B1_Mur1 SINE Alu -1 148 18 3 886 29 0 0 0 chr12 39524183 39524212 -81733318 + AT_rich Low_complexity Low_complexity 1 29 0 3 886 423 0 0 0 chr12 39525299 39525346 -81732184 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 886 266 67 22 0 chr12 39526134 39526179 -81731351 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 886 219 208 0 36 chr12 39526547 39526602 -81730928 + CT-rich Low_complexity Low_complexity 2 54 0 3 886 393 266 43 0 chr12 39526620 39526714 -81730816 - B1F2 SINE Alu -12 137 40 3 886 639 39 0 0 chr12 39526953 39527031 -81730499 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 3 886 718 255 78 5 chr12 39527170 39527363 -81730167 - B3 SINE B2 -9 207 1 3 886 205 217 0 42 chr12 39527523 39527571 -81729959 + CT-rich Low_complexity Low_complexity 3 48 0 4 886 560 336 0 0 chr12 39527579 39527713 -81729817 - ID_B1 SINE B4 -9 215 82 4 886 271 362 20 50 chr12 39527713 39527777 -81729753 + YREP_Mm Unknown Unknown 186 377 -1435 4 886 527 267 16 48 chr12 39528880 39529006 -81728524 + ID_B1 SINE B4 78 199 -25 4 886 221 102 68 0 chr12 39529727 39529786 -81727744 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 4 886 485 240 48 0 chr12 39530132 39530257 -81727273 - B1_Mur1 SINE Alu 0 149 19 4 886 298 306 0 0 chr12 39530528 39530590 -81726940 - ID4_ SINE ID -11 72 11 4 886 555 290 51 62 chr12 39530712 39530907 -81726623 - ID_B1 SINE B4 -17 207 15 4 886 261 252 8 134 chr12 39531397 39531439 -81726091 - BC1_Mm scRNA scRNA -40 112 80 4 886 234 0 0 0 chr12 39531439 39531465 -81726065 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 886 261 252 8 134 chr12 39531465 39531541 -81725989 - BC1_Mm scRNA scRNA -73 79 10 4 886 587 67 11 0 chr12 39532291 39532380 -81725150 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 886 374 296 0 0 chr12 39532788 39532876 -81724654 + PB1D10 SINE Alu 14 101 -16 5 886 365 164 0 14 chr12 39532930 39533004 -81724526 + GA-rich Low_complexity Low_complexity 2 74 0 5 886 471 130 0 0 chr12 39534365 39534442 -81723088 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 886 357 24 0 0 chr12 39534477 39534519 -81723011 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 886 192 179 0 0 chr12 39537626 39537665 -81719865 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 886 349 308 123 0 chr12 39538100 39538246 -81719284 - RSINE1 SINE B4 0 165 2 5 886 37 0 0 0 chr12 39538634 39538671 -81718859 + AT_rich Low_complexity Low_complexity 1 37 0 5 886 884 159 14 0 chr12 39538671 39538809 -81718721 - B1_Mur4 SINE Alu -9 141 2 5 886 207 0 0 0 chr12 39538810 39538833 -81718697 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 5 886 426 39 0 0 chr12 39540642 39540694 -81716836 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 886 210 242 119 15 chr12 39541753 39541820 -81715710 - PB1D7 SINE Alu -9 111 38 6 886 441 0 0 0 chr12 39541824 39541873 -81715657 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 886 503 46 11 33 chr12 39541873 39541963 -81715567 + (GA)n Simple_repeat Simple_repeat 2 89 0 6 886 207 115 37 37 chr12 39542012 39542066 -81715464 + T-rich Low_complexity Low_complexity 2 55 0 6 886 959 250 14 0 chr12 39542078 39542290 -81715240 - B3 SINE B2 0 216 2 6 886 654 285 21 0 chr12 39542455 39542599 -81714931 - RSINE1 SINE B4 -5 160 14 6 886 423 0 0 0 chr12 39543380 39543427 -81714103 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 886 1323 72 0 0 chr12 39543692 39543872 -81713658 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 886 329 311 48 82 chr12 39543878 39544025 -81713505 - RSINE1 SINE B4 0 165 24 6 886 234 61 20 39 chr12 39544039 39544090 -81713440 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 7 886 363 351 64 24 chr12 39545438 39545689 -81711841 - Tigger15a DNA TcMar -3 712 452 7 886 561 105 0 0 chr12 39545878 39545964 -81711566 + (GA)n Simple_repeat Simple_repeat 1 86 0 7 886 655 104 17 0 chr12 39545975 39546090 -81711440 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 7 886 438 20 0 0 chr12 39547427 39547478 -81710052 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 886 291 206 15 31 chr12 39548263 39548328 -81709202 - MER58B DNA MER1_type 0 341 278 7 886 240 187 286 26 chr12 39549369 39549446 -81708084 - ID_B1 SINE B4 -7 217 121 7 886 867 279 20 0 chr12 39549487 39549691 -81707839 - B3 SINE B2 -8 208 1 7 886 244 337 24 0 chr12 39549762 39549845 -81707685 - ORR1E LTR MaLR -5 354 270 7 886 274 278 154 31 chr12 39551863 39551993 -81705537 - MLT1B LTR MaLR -1 466 270 7 886 586 130 19 0 chr12 39551996 39552104 -81705426 + (GA)n Simple_repeat Simple_repeat 1 110 0 8 886 300 337 66 24 chr12 39552104 39552271 -81705259 - MLT1C LTR MaLR -140 327 154 8 886 229 284 112 6 chr12 39552443 39552613 -81704917 - L1M5 LINE L1 -336 5826 5639 8 886 212 59 29 0 chr12 39554115 39554149 -81703381 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 886 206 0 0 65 chr12 39555764 39555795 -81701735 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 8 886 24 0 0 0 chr12 39555861 39555885 -81701645 + AT_rich Low_complexity Low_complexity 1 24 0 8 886 1091 107 6 0 chr12 39555929 39556098 -81701432 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 8 886 847 175 35 0 chr12 39556106 39556249 -81701281 - B1_Mur3 SINE Alu -1 148 1 8 886 297 0 0 0 chr12 39556308 39556341 -81701189 + (T)n Simple_repeat Simple_repeat 1 33 0 8 886 239 229 0 0 chr12 39556685 39556733 -81700797 + (CATA)n Simple_repeat Simple_repeat 2 49 0 8 886 354 250 158 18 chr12 39556734 39556848 -81700682 - B1_Mur1 SINE Alu -5 144 15 9 886 330 271 31 20 chr12 39565344 39565442 -81692088 - B1F SINE Alu -9 140 42 9 886 502 41 14 14 chr12 39565449 39565523 -81692007 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 9 886 375 293 138 0 chr12 39565912 39566035 -81691495 - B1_Mur1 SINE Alu -8 141 2 9 886 810 308 5 0 chr12 39566067 39566281 -81691249 + B3 SINE B2 2 216 0 9 886 186 43 0 0 chr12 39567010 39567033 -81690497 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 886 244 318 39 99 chr12 39567271 39567615 -81689915 - MTEb LTR MaLR -25 354 25 9 886 448 325 98 26 chr12 39568014 39568248 -81689282 - MER47B DNA MER2_type -128 290 40 9 886 181 239 0 42 chr12 39568343 39568391 -81689139 - MIR SINE MIR -29 233 188 9 886 328 205 157 52 chr12 39568434 39568568 -81688962 + B1F2 SINE Alu 2 149 0 9 886 4390 58 0 0 chr12 39569213 39569765 -81687765 - L1Md_F2 LINE L1 -3 6579 6028 1 886 279 71 0 0 chr12 39569830 39569872 -81687658 + (T)n Simple_repeat Simple_repeat 1 42 0 1 886 183 80 0 0 chr12 39570460 39570485 -81687045 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 886 252 0 0 0 chr12 39571063 39571091 -81686439 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 886 800 259 14 41 chr12 39572732 39572953 -81684577 - B3 SINE B2 0 216 2 1 886 283 315 0 0 chr12 39573484 39573557 -81683973 - ID4_ SINE ID 0 83 11 1 886 519 56 0 0 chr12 39573674 39573745 -81683785 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 886 292 360 20 13 chr12 39575316 39575468 -81682062 - MIR SINE MIR -57 205 53 1 886 363 229 0 12 chr12 39577149 39577233 -81680297 - ID4 SINE ID 0 83 1 1 886 376 318 63 25 chr12 39579964 39580122 -81677408 + RSINE1 SINE B4 2 165 0 1 886 369 0 0 0 chr12 39580630 39580671 -81676859 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 887 894 287 85 15 chr12 39584537 39584809 -81672721 + B4A SINE B4 1 291 -1 1 887 24 32 0 0 chr12 39585456 39585487 -81672043 + AT_rich Low_complexity Low_complexity 1 31 0 1 887 663 144 0 0 chr12 39586191 39586302 -81671228 + (TCCC)n Simple_repeat Simple_repeat 3 113 0 1 887 237 253 54 152 chr12 39586338 39586450 -81671080 - PB1D10 SINE Alu -16 101 1 1 887 549 0 0 0 chr12 39587720 39587781 -81669749 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 887 225 108 0 0 chr12 39587786 39587823 -81669707 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 887 996 118 7 0 chr12 39588350 39588494 -81669036 - B1_Mus1 SINE Alu -1 147 3 1 887 35 54 0 0 chr12 39589584 39589640 -81667890 + AT_rich Low_complexity Low_complexity 1 56 0 1 887 218 32 0 31 chr12 39589686 39589718 -81667812 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 887 360 0 0 0 chr12 39589718 39589758 -81667772 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 887 498 297 31 8 chr12 39589759 39589888 -81667642 - RSINE1 SINE B4 -24 141 10 1 887 651 57 0 0 chr12 39590541 39590629 -81666901 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 887 315 0 0 0 chr12 39591072 39591107 -81666423 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 887 549 0 0 0 chr12 39591107 39591167 -81666363 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 887 942 175 0 0 chr12 39594832 39595009 -81662521 + CT-rich Low_complexity Low_complexity 3 179 0 1 887 605 267 88 71 chr12 39595326 39595552 -81661978 - MLT1D LTR MaLR -7 498 269 1 887 21 0 0 0 chr12 39596378 39596399 -81661131 + AT_rich Low_complexity Low_complexity 1 21 0 1 887 189 0 0 0 chr12 39596681 39596702 -81660828 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1 887 1885 138 3 61 chr12 39598363 39598709 -81658821 - ORR1A2 LTR MaLR -1 326 1 1 887 568 320 0 0 chr12 39599082 39599232 -81658298 + RSINE1 SINE B4 3 152 -13 1 887 700 96 17 0 chr12 39599246 39599361 -81658169 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 1 887 945 287 63 66 chr12 39599853 39600373 -81657157 - Lx7 LINE L1 -2 7471 6935 1 887 497 142 9 26 chr12 39602664 39602780 -81654750 + GA-rich Low_complexity Low_complexity 1 114 0 1 887 405 0 0 0 chr12 39602854 39602899 -81654631 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 887 1007 286 38 54 chr12 39603486 39603856 -81653674 - MLT1B LTR MaLR 0 390 27 1 887 347 309 8 53 chr12 39604269 39604402 -81653128 + L3 LINE CR1 3242 3368 -1121 1 887 219 219 0 0 chr12 39606013 39606054 -81651476 + (CATG)n Simple_repeat Simple_repeat 2 42 0 1 887 1394 242 93 8 chr12 39606365 39606753 -81650777 - MTC LTR MaLR 0 421 1 1 887 208 362 113 20 chr12 39608269 39608517 -81649013 - L2a LINE L2 -191 3235 2965 1 887 352 279 36 63 chr12 39609890 39610001 -81647529 - RSINE1 SINE B4 -13 152 45 1 887 1287 53 0 6 chr12 39610001 39610171 -81647359 + L1Md_F3 LINE L1 6370 6538 -46 1 887 2483 218 20 7 chr12 39610171 39610716 -81646814 - Lx7 LINE L1 -400 7296 6745 1 887 204 40 0 0 chr12 39610742 39610767 -81646763 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 887 314 23 0 23 chr12 39610820 39610864 -81646666 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 887 348 153 35 0 chr12 39612545 39612630 -81644900 + GA-rich Low_complexity Low_complexity 1 88 0 1 887 983 81 17 23 chr12 39612630 39612807 -81644723 + (GGAGA)n Simple_repeat Simple_repeat 5 180 0 1 887 888 351 113 9 chr12 39613198 39613624 -81643906 + MER70A LTR ERVL 1 470 -2 1 887 3610 179 59 32 chr12 39613855 39614606 -81642924 - Lx5 LINE L1 -3 7047 6277 1 887 183 80 0 0 chr12 39615762 39615787 -81641743 + (T)n Simple_repeat Simple_repeat 1 25 0 1 887 366 187 62 45 chr12 39615906 39615927 -81641603 + ORR1A3-int LTR MaLR 591 613 -1350 1 887 3797 107 33 18 chr12 39615927 39616498 -81641032 + MT2B LTR ERVL 1 580 -21 1 887 2634 59 0 0 chr12 39616498 39616838 -81640692 - L1Md_F2 LINE L1 -311 6271 5932 1 887 1876 71 0 0 chr12 39616834 39617089 -81640441 + L1Md_F2 LINE L1 6287 6541 -41 1 887 735 236 0 0 chr12 39617531 39617671 -81639859 - B1_Mur2 SINE Alu 0 149 10 1 887 287 259 30 141 chr12 39617595 39617694 -81639836 - MT2B LTR ERVL -361 240 153 1 887 306 133 0 3 chr12 39617708 39617765 -81639765 + MT2B2 LTR ERVL 537 584 0 1 887 1453 227 14 22 chr12 39618531 39618891 -81638639 - RCHARR1 DNA MER1_type -1 973 617 1 887 729 270 52 96 chr12 39618892 39619236 -81638294 + Lx8 LINE L1 6971 7299 -174 1 887 435 63 0 0 chr12 39619255 39619318 -81638212 + (CTAA)n Simple_repeat Simple_repeat 3 65 0 1 887 402 21 0 0 chr12 39619459 39619506 -81638024 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 887 1153 313 40 5 chr12 39619540 39619916 -81637614 - RCHARR1 DNA MER1_type -582 392 4 1 887 342 0 0 0 chr12 39620023 39620061 -81637469 + (T)n Simple_repeat Simple_repeat 1 38 0 1 887 1241 182 214 7 chr12 39620179 39620327 -81637203 + ORR1C1 LTR MaLR 1 176 -202 1 887 531 0 0 0 chr12 39620327 39620386 -81637144 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 887 1241 182 214 7 chr12 39620386 39620541 -81636989 + ORR1C1 LTR MaLR 177 367 -11 1 887 3354 248 72 52 chr12 39620548 39621157 -81636373 + ORR1C1-int LTR MaLR 1 639 -731 1 887 2083 29 0 0 chr12 39621157 39621403 -81636127 + L1Md_A LINE L1 6337 6582 0 1 887 3354 238 45 50 chr12 39621403 39621810 -81635720 + ORR1C1-int LTR MaLR 640 1020 -350 1 887 2831 46 46 0 chr12 39621814 39622183 -81635347 - L1Md_F3 LINE L1 0 6584 6199 1 887 1813 39 0 0 chr12 39622183 39622412 -81635118 + L1Md_F3 LINE L1 5929 6157 -427 1 887 1667 168 59 23 chr12 39622412 39622766 -81634764 + ORR1C1-int LTR MaLR 1143 1509 0 1 887 628 191 58 21 chr12 39622769 39622917 -81634613 + ORR1C1 LTR MaLR 5 140 -238 1 887 28 0 0 26 chr12 39623043 39623061 -81634469 + AT_rich Low_complexity Low_complexity 1 18 0 1 887 1272 27 0 0 chr12 39623061 39623208 -81634322 + B1_Mus2 SINE Alu 1 147 0 1 887 28 0 0 26 chr12 39623208 39623228 -81634302 + AT_rich Low_complexity Low_complexity 1 20 0 1 887 477 0 0 0 chr12 39623228 39623281 -81634249 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 887 1087 260 74 19 chr12 39623285 39623705 -81633825 - L1M4 LINE L1 -874 5272 4830 1 887 376 292 152 24 chr12 39623795 39623960 -81633570 + L1MC5 LINE L1 7011 7196 -765 1 887 282 284 13 26 chr12 39624498 39624574 -81632956 + MLT1F1 LTR MaLR 113 187 -382 1 887 406 312 30 23 chr12 39624839 39624970 -81632560 + MTEa LTR MaLR 9 140 -239 1 887 307 369 25 10 chr12 39624840 39625040 -81632490 + MT2A LTR ERVL 10 212 -321 1 887 1361 296 65 25 chr12 39625122 39625831 -81631699 - Lx7 LINE L1 -363 7110 6403 1 887 808 200 7 7 chr12 39625872 39626018 -81631512 - B1_Mus2 SINE Alu 0 147 2 1 887 185 0 0 39 chr12 39626126 39626152 -81631378 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 887 867 263 59 28 chr12 39626216 39626502 -81631028 + Lx7 LINE L1 6919 7213 -483 1 887 447 266 442 5 chr12 39626641 39626849 -81630681 + Lx8 LINE L1 7001 7299 -174 1 887 306 0 0 0 chr12 39626877 39626911 -81630619 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 887 360 0 0 0 chr12 39627036 39627076 -81630454 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 887 331 230 76 42 chr12 39627122 39627240 -81630290 + L1MC4 LINE L1 7775 7896 -146 1 887 725 174 6 0 chr12 39627383 39627544 -81629986 + (TA)n Simple_repeat Simple_repeat 2 163 0 1 887 2651 197 56 69 chr12 39627609 39628231 -81629299 - RLTR18 LTR ERVK -2 614 1 1 887 323 350 33 25 chr12 39628728 39628848 -81628682 - RSINE1 SINE B4 0 165 45 1 887 543 343 105 44 chr12 39631885 39632324 -81625206 + MLT1C LTR MaLR 3 467 0 1 887 21 0 0 0 chr12 39632639 39632660 -81624870 + AT_rich Low_complexity Low_complexity 1 21 0 1 887 867 260 20 0 chr12 39633576 39633780 -81623750 + MER58A DNA MER1_type 2 209 -15 1 887 437 289 108 8 chr12 39634610 39634739 -81622791 - B1F SINE Alu -7 142 1 1 887 679 303 140 22 chr12 39635094 39635452 -81622078 + MLT1C LTR MaLR 66 465 -2 1 887 225 340 0 0 chr12 39635576 39635626 -81621904 + PB1 SINE Alu 3 52 -75 1 887 360 314 137 24 chr12 39636017 39636141 -81621389 - ID_B1 SINE B4 -3 221 84 1 887 23 0 0 0 chr12 39636650 39636673 -81620857 + AT_rich Low_complexity Low_complexity 1 23 0 1 887 2074 80 0 14 chr12 39636673 39636965 -81620565 - L1Md_F2 LINE L1 -1 6581 6294 1 887 1123 28 0 0 chr12 39636965 39637106 -81620424 + L1Md_F2 LINE L1 6158 6298 -284 1 887 33937 39 0 2 chr12 39637548 39642643 -81614887 - L1Md_T LINE L1 0 6585 1502 1 887 8184 4 0 0 chr12 39642638 39643594 -81613936 + L1Md_A LINE L1 4631 5586 -297 1 887 9093 1 0 0 chr12 39643594 39644590 -81612940 + L1Md_A LINE L1 5587 6582 0 1 887 6977 77 1 23 chr12 39644600 39645863 -81611667 - L1Md_T LINE L1 -4364 1522 180 1 887 354 295 46 26 chr12 39645861 39646056 -81611474 - L1_Mur3 LINE L1 -457 5423 5225 1 887 692 317 16 4 chr12 39646129 39646431 -81611099 + L1M2 LINE L1 5457 5764 -527 1 887 316 337 0 24 chr12 39646431 39646516 -81611014 + B3A SINE B2 70 152 -46 1 887 224 191 0 0 chr12 39646532 39646569 -81610961 + (TATG)n Simple_repeat Simple_repeat 1 37 0 2 887 590 113 0 9 chr12 39646569 39646685 -81610845 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 2 887 224 191 0 0 chr12 39646685 39646694 -81610836 + (TATG)n Simple_repeat Simple_repeat 4 12 0 2 887 28 61 0 0 chr12 39646701 39646750 -81610780 + AT_rich Low_complexity Low_complexity 1 49 0 2 887 975 282 51 25 chr12 39646811 39647284 -81610246 + L1MB1 LINE L1 5677 6161 -7 2 887 411 360 7 26 chr12 39647825 39647979 -81609551 - RSINE1 SINE B4 -4 161 11 2 887 8311 184 32 45 chr12 39648582 39650588 -81606942 - L1_Mur3 LINE L1 -1610 4270 2292 2 887 1604 238 42 70 chr12 39650589 39651384 -81606146 - L1_Mur3 LINE L1 -3952 1928 1158 2 887 640 244 105 9 chr12 39651370 39651713 -81605817 - L1_Mur3 LINE L1 -6461 1267 892 2 887 1551 179 15 0 chr12 39652252 39652520 -81605010 + RLTR20D LTR ERVK 1 272 -296 2 887 287 276 39 13 chr12 39652530 39652607 -81604923 - B2_Mm2 SINE B2 -102 93 15 2 887 699 300 62 46 chr12 39653600 39654010 -81603520 + LTR40b LTR ERVL 15 453 -12 2 887 315 0 0 0 chr12 39654594 39654629 -81602901 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 887 707 335 25 0 chr12 39654967 39655206 -81602324 - MER2 DNA MER2_type -14 331 87 2 887 3376 35 28 2 chr12 39657598 39658023 -81599507 - RLTR10C LTR ERVK 0 436 1 2 887 417 54 0 0 chr12 39658168 39658224 -81599306 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 887 221 404 11 0 chr12 39658863 39658957 -81598573 - PB1 SINE Alu -12 115 21 2 887 228 240 20 0 chr12 39659236 39659286 -81598244 - MER34 LTR ERV1 -491 51 1 2 887 237 235 0 0 chr12 39659696 39659747 -81597783 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2 887 344 363 67 0 chr12 39659758 39659893 -81597637 - RSINE1 SINE B4 -18 147 4 2 887 1312 89 39 0 chr12 39660082 39660262 -81597268 + B2_Mm2 SINE B2 1 187 -8 2 887 1368 62 0 0 chr12 39661159 39661368 -81596162 + (TTTC)n Simple_repeat Simple_repeat 1 209 0 2 887 553 336 113 34 chr12 39661661 39662048 -81595482 + Charlie1a DNA MER1_type 77 504 -951 2 887 366 23 0 0 chr12 39662048 39662091 -81595439 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 887 553 336 113 34 chr12 39662091 39662199 -81595331 + Charlie1a DNA MER1_type 505 611 -844 2 887 975 183 61 28 chr12 39663211 39663425 -81594105 - URR1B DNA MER1_type 0 225 5 2 887 281 47 23 0 chr12 39663473 39663516 -81594014 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 887 379 162 0 0 chr12 39664192 39664272 -81593258 + Lx2 LINE L1 6918 6997 0 2 887 3088 144 71 4 chr12 39664272 39664835 -81592695 + Lx2 LINE L1 6376 6976 -21 2 887 24 0 0 0 chr12 39664840 39664864 -81592666 + AT_rich Low_complexity Low_complexity 1 24 0 2 887 253 131 0 32 chr12 39664900 39664963 -81592567 + (TTG)n Simple_repeat Simple_repeat 3 63 0 2 887 246 128 0 0 chr12 39664992 39665031 -81592499 + (GGGA)n Simple_repeat Simple_repeat 2 40 0 2 887 234 350 70 53 chr12 39665312 39665499 -81592031 + Charlie1a DNA MER1_type 947 1136 -319 2 887 227 289 129 24 chr12 39665984 39666069 -81591461 - MER5A DNA MER1_type -89 100 7 2 887 335 351 78 43 chr12 39667487 39667832 -81589698 + ORR1D2 LTR MaLR 6 362 -8 2 887 1108 102 0 0 chr12 39667914 39668061 -81589469 - B1_Mus2 SINE Alu 0 147 1 2 887 22 35 0 0 chr12 39670314 39670343 -81587187 + AT_rich Low_complexity Low_complexity 1 29 0 2 887 6124 175 29 2 chr12 39672047 39673251 -81584279 - L1_Mur2 LINE L1 -620 5257 4021 2 887 2358 161 32 37 chr12 39673249 39673291 -81584239 + Lx LINE L1 5420 5460 -423 2 887 1200 62 0 0 chr12 39673291 39673437 -81584093 + B1_Mm SINE Alu 2 147 0 2 887 261 0 0 0 chr12 39673441 39673470 -81584060 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 887 5787 134 72 8 chr12 39673470 39674600 -81582930 + Lx LINE L1 5461 6653 -1 2 887 729 81 36 30 chr12 39674687 39674853 -81582677 + (TCTCTG)n Simple_repeat Simple_repeat 2 168 0 2 887 351 44 0 0 chr12 39674853 39674898 -81582632 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 887 246 62 0 0 chr12 39676468 39676500 -81581030 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 2 887 331 354 9 0 chr12 39677386 39677499 -81580031 + MLT1A LTR MaLR 261 374 0 2 887 198 0 0 0 chr12 39677503 39677525 -81580005 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 887 27 49 0 0 chr12 39678216 39678257 -81579273 + AT_rich Low_complexity Low_complexity 1 41 0 2 887 369 0 0 0 chr12 39678371 39678412 -81579118 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 887 456 19 0 0 chr12 39678412 39678464 -81579066 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 887 518 293 78 0 chr12 39678512 39678628 -81578902 - B3 SINE B2 -86 130 6 2 887 198 103 0 0 chr12 39678641 39678670 -81578860 + (T)n Simple_repeat Simple_repeat 1 29 0 2 887 278 232 137 0 chr12 39678673 39678768 -81578762 - Lx5 LINE L1 -3 7047 6940 2 887 938 176 5 5 chr12 39678790 39678996 -81578534 - Lx4A LINE L1 -853 6205 6000 2 887 4379 219 69 30 chr12 39679037 39679331 -81578199 + L1_Mur3 LINE L1 39 336 -7392 2 887 1119 89 0 0 chr12 39679331 39679510 -81578020 + (TCCTG)n Simple_repeat Simple_repeat 2 180 0 2 887 4379 214 60 30 chr12 39679510 39680890 -81576640 + L1_Mur3 LINE L1 337 1682 -4198 2 887 680 104 52 7 chr12 39680891 39681027 -81576503 + L1_Mur3 LINE L1 1067 1208 -6504 2 887 449 91 45 0 chr12 39681017 39681105 -81576425 + L1_Mur3 LINE L1 1668 1759 -4121 2 887 1182 64 0 0 chr12 39681160 39681301 -81576229 + B1_Mus2 SINE Alu 1 141 -6 2 887 265 75 19 19 chr12 39681301 39681355 -81576175 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 2 887 483 171 45 0 chr12 39681364 39681475 -81576055 + L1_Mur3 LINE L1 2150 2265 -3615 2 887 1588 188 260 51 chr12 39681478 39682167 -81575363 + L1_Mur3 LINE L1 2455 3287 -2593 2 887 11342 82 16 12 chr12 39682152 39684859 -81572671 + L1Md_F LINE L1 104 2822 -3061 2 887 7336 78 10 7 chr12 39684857 39685932 -81571598 + L1Md_F LINE L1 3920 4997 -886 2 887 7945 210 233 35 chr12 39685906 39687647 -81569883 + Lx5 LINE L1 1616 3412 -2465 2 887 222 37 0 0 chr12 39687647 39687674 -81569856 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 887 7945 210 233 35 chr12 39687674 39689405 -81568125 + Lx5 LINE L1 3413 5775 -102 2 887 1452 260 70 52 chr12 39689404 39690038 -81567492 + Lx5 LINE L1 5885 6747 -713 2 887 907 123 68 14 chr12 39690059 39690207 -81567323 + B2_Mm2 SINE B2 2 157 -38 2 887 1440 312 7 27 chr12 39690216 39690843 -81566687 + Lx5 LINE L1 6455 7426 -34 2 887 180 111 0 0 chr12 39690847 39690874 -81566656 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 2 887 4269 202 77 27 chr12 39690878 39692382 -81565148 + Lx7 LINE L1 4729 6317 -1379 2 887 26 30 0 0 chr12 39692504 39692537 -81564993 + AT_rich Low_complexity Low_complexity 1 33 0 2 887 828 268 191 2 chr12 39692686 39693116 -81564414 - Charlie21a DNA MER1_type -447 766 256 2 887 1140 214 26 6 chr12 39693726 39694086 -81563444 - Lx2B LINE L1 -8 7050 6608 2 887 586 202 8 8 chr12 39694109 39694229 -81563301 - RMER17C LTR ERVK 0 410 291 2 887 1073 143 195 20 chr12 39694230 39694790 -81562740 - RMER17C-int LTR ERVK -5 3233 2576 2 887 850 156 62 0 chr12 39694804 39694983 -81562547 - RMER17C-int LTR ERVK -879 2359 2170 2 887 563 132 0 0 chr12 39694994 39695077 -81562453 - RMER17C LTR ERVK -327 83 1 2 887 258 29 0 0 chr12 39695077 39695111 -81562419 - RMER17C-int LTR ERVK 0 3238 3205 2 887 1020 172 19 24 chr12 39695115 39695323 -81562207 - Lx2B LINE L1 -493 6565 6359 2 887 4408 168 12 35 chr12 39695318 39696243 -81561287 + L1_Mur2 LINE L1 4113 5016 -861 2 887 257 246 0 17 chr12 39696884 39696942 -81560588 + L2c LINE L2 3268 3324 -63 2 887 1437 164 179 28 chr12 39697145 39697464 -81560066 - ORR1B2 LTR MaLR 0 367 1 2 887 366 42 0 0 chr12 39697573 39697621 -81559909 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 887 224 339 0 139 chr12 39698005 39698156 -81559374 - L2c LINE L2 0 3387 3258 2 887 405 0 0 0 chr12 39701764 39701809 -81555721 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2 887 221 211 18 0 chr12 39702081 39702138 -81555392 + CT-rich Low_complexity Low_complexity 1 58 0 2 887 250 309 83 95 chr12 39703092 39703260 -81554270 - MER58B DNA MER1_type -9 332 167 2 887 324 0 0 0 chr12 39703462 39703498 -81554032 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 887 572 302 0 0 chr12 39703500 39703626 -81553904 - B3A SINE B2 -72 126 1 2 887 1558 236 73 49 chr12 39703901 39704310 -81553220 + MTD LTR MaLR 1 419 0 2 887 450 328 28 0 chr12 39704310 39704560 -81552970 - L1MA4 LINE L1 -405 5895 5639 2 887 192 163 0 0 chr12 39704577 39704620 -81552910 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 887 613 298 79 24 chr12 39704702 39704994 -81552536 - Lx8 LINE L1 -4 7469 7162 2 887 23 0 0 0 chr12 39705046 39705069 -81552461 + AT_rich Low_complexity Low_complexity 1 23 0 2 887 346 219 16 81 chr12 39705239 39705298 -81552232 - L1MA4 LINE L1 -822 5481 5429 2 887 490 297 7 0 chr12 39705298 39705443 -81552087 - B1F SINE Alu -3 146 1 2 887 346 247 21 67 chr12 39705443 39705572 -81551958 - L1MA4 LINE L1 -869 5428 5298 2 887 813 274 40 5 chr12 39705623 39705821 -81551709 - B3 SINE B2 -6 210 6 2 887 2522 36 2 259 chr12 39705826 39706348 -81551182 - RLTR10 LTR ERVK -2 388 1 2 887 15689 30 4 31 chr12 39706350 39708407 -81549123 - RLTR10-int LTR ERVK -3 1984 6 2 887 2533 34 2 259 chr12 39708407 39708929 -81548601 - RLTR10 LTR ERVK -2 388 1 2 887 288 0 0 0 chr12 39709329 39709361 -81548169 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 887 414 88 0 0 chr12 39709361 39709429 -81548101 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 887 3212 264 105 10 chr12 39709978 39711012 -81546518 - RMER1A Other Other -1 1029 54 2 887 254 292 0 0 chr12 39713052 39713100 -81544430 - RSINE1 SINE B4 -24 141 94 2 887 34 72 0 0 chr12 39713523 39713592 -81543938 + AT_rich Low_complexity Low_complexity 1 69 0 2 887 1599 188 70 6 chr12 39713884 39714215 -81543315 + ORR1B2 LTR MaLR 1 352 -15 2 887 26 0 0 0 chr12 39714782 39714808 -81542722 + AT_rich Low_complexity Low_complexity 1 26 0 2 888 591 330 16 21 chr12 39715188 39715380 -81542150 - ID_B1 SINE B4 -2 222 32 2 888 22721 23 0 0 chr12 39715672 39718473 -81539057 + L1Md_T LINE L1 2785 5586 -297 2 888 9035 5 0 0 chr12 39718473 39719469 -81538061 + L1Md_T LINE L1 5587 6582 0 2 888 181 98 49 0 chr12 39719495 39719536 -81537994 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 888 3849 115 24 13 chr12 39719679 39720297 -81537233 - Lx LINE L1 -6 6648 6024 2 888 2821 126 43 7 chr12 39720316 39720780 -81536750 - L1_Mus4 LINE L1 -71 5812 5332 2 888 666 135 0 0 chr12 39720758 39720869 -81536661 + L1_Mus4 LINE L1 5767 5877 -759 2 888 1630 161 76 54 chr12 39720867 39721236 -81536294 + Lx LINE L1 6277 6653 -1 2 888 1883 165 28 16 chr12 39721253 39721641 -81535889 - Lx2 LINE L1 -649 6348 5956 2 888 7944 133 41 5 chr12 39721633 39723864 -81533666 - Lx LINE L1 -3 6651 4329 2 888 889 296 16 36 chr12 39723867 39724172 -81533358 - RMER13B LTR ERVK -4 904 606 2 888 35 24 0 0 chr12 39724781 39724823 -81532707 + AT_rich Low_complexity Low_complexity 1 42 0 2 888 2241 174 32 25 chr12 39726112 39726461 -81531069 - RLTR31A_Mm LTR ERVK -145 439 84 3 888 396 0 0 0 chr12 39726461 39726505 -81531025 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 888 2241 174 32 25 chr12 39726505 39726591 -81530939 - RLTR31A_Mm LTR ERVK -501 83 1 3 888 4704 195 57 41 chr12 39726592 39727865 -81529665 - RMER3D-int LTR ERVK -1 2841 1549 3 888 7031 207 30 98 chr12 39727903 39728086 -81529444 + Lx5 LINE L1 3959 4133 -1747 3 888 3252 123 18 14 chr12 39728086 39728598 -81528932 + Lx2 LINE L1 6484 6997 0 3 888 7031 207 33 98 chr12 39728598 39731262 -81526268 + Lx5 LINE L1 4134 6536 -514 3 888 271 0 51 0 chr12 39731262 39731301 -81526229 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 888 5890 208 40 98 chr12 39731301 39731777 -81525753 + Lx5 LINE L1 6537 7042 -8 3 888 24 0 0 0 chr12 39731869 39731893 -81525637 + AT_rich Low_complexity Low_complexity 1 24 0 3 888 378 61 0 0 chr12 39732018 39732067 -81525463 + (CATA)n Simple_repeat Simple_repeat 3 51 0 3 888 207 114 0 0 chr12 39732202 39732237 -81525293 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 888 277 0 93 0 chr12 39732528 39732571 -81524959 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 888 1056 70 7 7 chr12 39732575 39732720 -81524810 - B1_Mus2 SINE Alu 0 147 3 3 888 322 333 16 66 chr12 39732806 39732928 -81524602 - B1F SINE Alu -33 116 1 3 888 1680 257 48 71 chr12 39733124 39733660 -81523870 - RMER19C LTR ERVK 0 611 88 3 888 2304 170 219 19 chr12 39733871 39734446 -81523084 - RMER6C LTR ERVK 0 690 1 3 888 625 101 9 57 chr12 39734446 39734539 -81522991 + BGLII LTR ERVK 264 352 -69 3 888 669 47 0 0 chr12 39734539 39734624 -81522906 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 888 625 101 9 57 chr12 39734624 39734635 -81522895 + BGLII LTR ERVK 353 363 -58 3 888 27111 97 57 4 chr12 39734854 39740574 -81516956 - L1_Mus1 LINE L1 0 6567 513 3 888 7096 92 4 19 chr12 39741563 39742988 -81514542 + L1_Mus1 LINE L1 5153 6566 -1 3 888 404 318 97 40 chr12 39743508 39743734 -81513796 + L3 LINE CR1 3141 3379 -1110 3 888 23 0 0 0 chr12 39744439 39744462 -81513068 + AT_rich Low_complexity Low_complexity 1 23 0 3 888 2614 249 105 22 chr12 39744516 39744667 -81512863 - Lx9 LINE L1 0 7644 7431 3 888 759 59 0 0 chr12 39744667 39744768 -81512762 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 888 2614 249 105 22 chr12 39744768 39745462 -81512068 - Lx9 LINE L1 -214 7430 6729 3 888 492 341 112 47 chr12 39745526 39745736 -81511794 - Lx8 LINE L1 -34 7439 7220 3 888 276 30 0 0 chr12 39745736 39745769 -81511761 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 3 888 492 341 112 47 chr12 39745769 39746112 -81511418 - Lx8 LINE L1 -254 7219 6850 3 888 296 250 0 0 chr12 39746113 39746181 -81511349 - Lx8 LINE L1 -983 6490 6423 3 888 2268 38 0 0 chr12 39746675 39746942 -81510588 + L1Md_F3 LINE L1 5320 5586 -297 3 888 8185 29 13 1 chr12 39746942 39747916 -81509614 + L1Md_F3 LINE L1 5587 6572 -12 3 888 289 274 89 89 chr12 39747985 39748097 -81509433 - Lx8 LINE L1 -1029 6444 6333 3 888 249 352 97 4 chr12 39748479 39748736 -81508794 - L1MD3 LINE L1 -266 7729 7449 3 888 526 335 58 93 chr12 39748752 39749203 -81508327 - MLT1D LTR MaLR -15 490 56 3 888 412 354 28 6 chr12 39749341 39749520 -81508010 - B3A SINE B2 -15 183 1 3 888 180 0 0 0 chr12 39750023 39750043 -81507487 + (TAGA)n Simple_repeat Simple_repeat 3 22 0 3 888 182 0 0 97 chr12 39750439 39750470 -81507060 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 888 414 0 0 0 chr12 39750699 39750745 -81506785 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 888 21 0 0 0 chr12 39750816 39750837 -81506693 + AT_rich Low_complexity Low_complexity 1 21 0 3 888 421 144 11 11 chr12 39751015 39751106 -81506424 + CT-rich Low_complexity Low_complexity 3 93 0 3 888 364 330 38 55 chr12 39751218 39751401 -81506129 + B3 SINE B2 37 216 0 3 888 763 301 6 6 chr12 39751434 39751608 -81505922 - B4 SINE B4 -117 175 2 3 888 327 255 41 26 chr12 39751608 39751765 -81505765 - L1M2 LINE L1 -874 5269 5048 3 888 1259 262 60 11 chr12 39751999 39752346 -81505184 + ORR1D1 LTR MaLR 1 364 -10 3 888 396 0 0 0 chr12 39753522 39753566 -81503964 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 888 243 339 58 42 chr12 39754808 39754928 -81502602 - ORR1E LTR MaLR -209 150 29 3 888 467 292 66 49 chr12 39755147 39755367 -81502163 - MIRb SINE MIR -26 236 20 3 888 24 67 0 0 chr12 39757003 39757048 -81500482 + AT_rich Low_complexity Low_complexity 1 45 0 3 888 274 281 80 32 chr12 39757645 39757770 -81499760 + MIR SINE MIR 45 175 -87 3 888 621 0 0 0 chr12 39758488 39758557 -81498973 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 888 8359 55 0 10 chr12 39759525 39760583 -81496947 - L1_Mm LINE L1 -192 5691 4645 3 888 520 253 161 11 chr12 39760654 39760834 -81496696 + B3 SINE B2 1 207 -9 3 888 327 25 0 0 chr12 39761367 39761407 -81496123 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 888 298 305 95 0 chr12 39761412 39761507 -81496023 - B4A SINE B4 -6 286 183 3 888 287 352 0 46 chr12 39762470 39762601 -81494929 + PB1 SINE Alu 1 125 -2 3 888 24 32 0 0 chr12 39762669 39762700 -81494830 + AT_rich Low_complexity Low_complexity 1 31 0 3 888 348 24 0 0 chr12 39763131 39763172 -81494358 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 888 317 22 0 43 chr12 39764375 39764422 -81493108 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 3 888 1330 47 6 0 chr12 39765982 39766153 -81491377 - L1Md_T LINE L1 -2 6580 6409 3 888 2189 24 0 0 chr12 39766153 39766407 -81491123 + L1Md_T LINE L1 6129 6382 -200 3 888 372 220 227 32 chr12 39768007 39768167 -81489363 + Lx9 LINE L1 7089 7271 -373 3 888 1696 197 17 79 chr12 39768203 39768606 -81488924 - RLTR1B LTR ERV1 0 512 135 3 888 795 254 5 36 chr12 39768693 39768914 -81488616 + Lx9 LINE L1 7300 7513 -131 3 888 538 186 3 0 chr12 39768915 39769021 -81488509 + B2_Mm2 SINE B2 1 108 -85 3 888 354 175 78 9 chr12 39769030 39769145 -81488385 + Lx9 LINE L1 7521 7643 -1 3 888 531 304 64 16 chr12 39769160 39769347 -81488183 - B3A SINE B2 -1 197 2 3 888 1554 300 58 31 chr12 39769347 39769857 -81487673 - ORR1E-int LTR MaLR -1047 533 10 3 888 229 273 0 0 chr12 39769858 39769913 -81487617 - ORR1E LTR MaLR 0 379 325 3 888 237 65 0 0 chr12 39769915 39769946 -81487584 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 888 336 279 194 37 chr12 39769970 39770078 -81487452 - RSINE1 SINE B4 -37 128 4 3 888 280 321 81 18 chr12 39770078 39770187 -81487343 - ORR1E LTR MaLR -35 324 209 3 888 274 369 170 0 chr12 39770209 39770350 -81487180 - ORR1E LTR MaLR -214 165 1 3 888 3011 50 8 3 chr12 39770432 39770814 -81486716 + L1Md_F3 LINE L1 6198 6581 -3 3 888 564 29 0 0 chr12 39771108 39771178 -81486352 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 888 208 246 8 30 chr12 39772483 39772618 -81484912 + CT-rich Low_complexity Low_complexity 1 131 0 3 888 397 85 49 0 chr12 39773147 39773229 -81484301 + (TTTTTG)n Simple_repeat Simple_repeat 4 89 0 3 888 313 313 35 9 chr12 39773872 39773988 -81483542 + MIR SINE MIR 14 132 -136 3 888 1973 238 73 47 chr12 39776696 39776794 -81480736 - Lx5 LINE L1 0 7050 6943 3 888 567 0 0 0 chr12 39776794 39776857 -81480673 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 3 888 1973 238 73 47 chr12 39776857 39777317 -81480213 - Lx5 LINE L1 -108 6942 6477 3 888 20210 168 42 48 chr12 39777309 39779695 -81477835 - Lx5 LINE L1 -1098 5952 3503 3 888 1102 83 0 0 chr12 39779695 39779840 -81477690 + B1_Mus2 SINE Alu 2 146 -1 3 888 20210 177 48 54 chr12 39779840 39781906 -81475624 - Lx5 LINE L1 -2375 3502 1510 3 888 4510 104 40 39 chr12 39781906 39782606 -81474924 - Lx LINE L1 0 6654 5954 3 888 20210 211 45 35 chr12 39782606 39783199 -81474331 - Lx5 LINE L1 -4368 1509 920 3 888 38 22 0 0 chr12 39783682 39783727 -81473803 + AT_rich Low_complexity Low_complexity 1 45 0 3 888 1081 282 53 33 chr12 39787479 39787839 -81469691 - ORR1D2 LTR MaLR -3 367 1 3 888 190 70 86 17 chr12 39787980 39788038 -81469492 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 3 888 2128 191 134 4 chr12 39788082 39788546 -81468984 + RLTR24 LTR ERV1 6 529 0 3 888 747 264 216 24 chr12 39788546 39788714 -81468816 - ORR1D1 LTR MaLR -31 343 159 3 888 1055 66 0 0 chr12 39788714 39788851 -81468679 + B1_Mus1 SINE Alu 1 137 -11 3 888 216 0 0 0 chr12 39788851 39788875 -81468655 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 888 747 264 216 24 chr12 39788875 39788991 -81468539 - ORR1D1 LTR MaLR -216 158 4 3 888 4050 58 4 15 chr12 39789292 39789816 -81467714 + L1_Mus1 LINE L1 6050 6567 0 3 888 551 312 95 92 chr12 39790105 39790451 -81467079 - ORR1E LTR MaLR 0 359 13 3 888 356 342 87 41 chr12 39790686 39790881 -81466649 + B4A SINE B4 6 209 -83 3 888 638 145 7 0 chr12 39790933 39791085 -81466445 + GA-rich Low_complexity Low_complexity 2 154 0 3 888 387 192 0 0 chr12 39791109 39791187 -81466343 + G-rich Low_complexity Low_complexity 4 81 0 3 888 261 259 17 92 chr12 39791765 39791884 -81465646 - Charlie10 DNA MER1_type -158 2664 2555 3 888 234 62 0 0 chr12 39793681 39793713 -81463817 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 888 786 256 34 5 chr12 39793722 39793926 -81463604 - B3 SINE B2 -6 210 1 3 888 1340 273 54 21 chr12 39794755 39795295 -81462235 + L1MA6 LINE L1 5350 5937 -363 3 888 206 118 0 0 chr12 39795807 39795841 -81461689 + (A)n Simple_repeat Simple_repeat 1 34 0 3 888 780 272 186 0 chr12 39795858 39796137 -81461393 + Lx9 LINE L1 7031 7361 -283 3 888 3032 226 11 56 chr12 39796119 39796813 -81460717 + Lx6 LINE L1 6685 7347 -113 3 888 318 26 0 0 chr12 39798725 39798764 -81458766 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 888 612 81 0 0 chr12 39799543 39799630 -81457900 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 888 377 268 176 39 chr12 39801687 39801920 -81455610 + MLT1E LTR MaLR 89 353 -300 3 888 528 266 41 50 chr12 39802726 39802944 -81454586 - MER20 DNA MER1_type 0 219 4 3 888 24 0 0 0 chr12 39802986 39803010 -81454520 + AT_rich Low_complexity Low_complexity 1 24 0 3 888 382 240 21 0 chr12 39803056 39803152 -81454378 - L1MA5 LINE L1 -27 6273 6176 3 888 378 0 0 0 chr12 39803688 39803730 -81453800 + (TTA)n Simple_repeat Simple_repeat 2 43 0 3 888 2603 147 58 0 chr12 39803736 39804165 -81453365 - Lx3A LINE L1 -9 6972 6519 3 888 756 77 0 0 chr12 39805668 39805772 -81451758 + (GA)n Simple_repeat Simple_repeat 1 104 0 3 888 186 274 0 0 chr12 39805941 39805992 -81451538 + L2 LINE L2 2109 2159 -1260 3 888 260 355 81 7 chr12 39806142 39806278 -81451252 - MLT1H2 LTR MaLR 0 489 344 3 888 225 389 34 34 chr12 39806323 39806472 -81451058 - MLT1H2 LTR MaLR -222 373 225 3 888 23 0 0 0 chr12 39806480 39806503 -81451027 + AT_rich Low_complexity Low_complexity 1 23 0 3 888 416 333 57 26 chr12 39806516 39806710 -81450820 - B3 SINE B2 -13 203 4 3 888 963 328 54 15 chr12 39807187 39807803 -81449727 + L1M2 LINE L1 4657 5296 -847 4 888 1965 292 45 18 chr12 39807876 39808543 -81448987 + Lx8 LINE L1 6789 7473 0 4 888 1003 284 108 31 chr12 39808561 39809111 -81448419 + Lx6 LINE L1 5338 5927 -1546 4 888 1189 208 11 8 chr12 39810856 39811122 -81446408 - L1_Mur3 LINE L1 -539 5341 5075 4 888 1126 218 4 22 chr12 39811118 39811386 -81446144 + L1_Mur3 LINE L1 5599 5861 -19 4 888 1911 267 42 20 chr12 39811402 39811990 -81445540 + Lx6 LINE L1 6488 7460 0 4 888 1185 218 52 140 chr12 39812616 39812720 -81444810 - ORR1B1 LTR MaLR -3 391 299 4 888 1257 80 6 0 chr12 39812720 39812895 -81444635 + L1_Mus1 LINE L1 6392 6567 0 4 888 1185 218 52 140 chr12 39812895 39813175 -81444355 - ORR1B1 LTR MaLR -96 298 41 4 888 240 143 0 0 chr12 39813256 39813298 -81444232 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 888 1277 270 70 10 chr12 39813299 39813684 -81443846 - Lx6 LINE L1 -28 7432 7025 4 888 21 0 0 0 chr12 39813793 39813814 -81443716 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 2897 6 0 3 chr12 39815515 39815845 -81441685 - L1Md_A LINE L1 0 6582 6254 4 888 389 179 12 0 chr12 39816581 39816665 -81440865 + (TA)n Simple_repeat Simple_repeat 1 85 0 4 888 41 58 0 0 chr12 39816840 39816909 -81440621 + AT_rich Low_complexity Low_complexity 1 69 0 4 888 6379 231 54 22 chr12 39817219 39819118 -81438412 + Lx7 LINE L1 5371 7327 -369 4 888 432 0 0 0 chr12 39819482 39819530 -81438000 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 888 969 201 19 159 chr12 39819534 39819906 -81437624 + Lx7 LINE L1 7365 7684 -12 4 888 396 0 0 0 chr12 39819907 39819951 -81437579 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 888 198 171 0 0 chr12 39820112 39820153 -81437377 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 888 3512 176 39 14 chr12 39820490 39821189 -81436341 + RMER6D LTR ERVK 1 716 -4 4 888 341 320 60 66 chr12 39821215 39821272 -81436258 - B4 SINE B4 -121 171 117 4 888 1564 184 48 197 chr12 39821272 39821794 -81435736 - RLTR41 LTR ERV1 -2 444 1 4 888 341 320 60 66 chr12 39821794 39821903 -81435627 - B4 SINE B4 -176 116 6 4 888 363 316 126 6 chr12 39822308 39822483 -81435047 + MER58A DNA MER1_type 29 224 0 4 888 25 0 0 0 chr12 39822494 39822519 -81435011 + AT_rich Low_complexity Low_complexity 1 25 0 4 888 23 0 0 0 chr12 39822540 39822563 -81434967 + AT_rich Low_complexity Low_complexity 1 23 0 4 888 234 204 0 0 chr12 39822845 39822938 -81434592 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 4 888 366 80 0 0 chr12 39823381 39823431 -81434099 + (A)n Simple_repeat Simple_repeat 1 50 0 4 888 22 0 0 0 chr12 39823452 39823474 -81434056 + AT_rich Low_complexity Low_complexity 1 22 0 4 888 183 42 0 0 chr12 39824318 39824342 -81433188 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 4 888 2525 292 30 71 chr12 39824349 39825263 -81432267 - Lx5 LINE L1 -30 7020 6145 4 888 890 168 95 53 chr12 39825271 39825507 -81432023 + Lx6 LINE L1 5777 6034 -1426 4 888 414 0 0 0 chr12 39825507 39825553 -81431977 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 888 890 209 123 48 chr12 39825553 39825619 -81431911 + Lx6 LINE L1 6035 6103 -1357 4 888 523 314 139 77 chr12 39826444 39826796 -81430734 + MLT1B LTR MaLR 1 374 -16 4 888 4144 53 6 21 chr12 39827037 39827572 -81429958 + L1Md_F2 LINE L1 5878 6404 -178 4 888 28 0 0 0 chr12 39828830 39828858 -81428672 + AT_rich Low_complexity Low_complexity 1 28 0 4 888 213 275 101 0 chr12 39829337 39829406 -81428124 - B1F1 SINE Alu -61 88 13 4 888 432 37 0 0 chr12 39829417 39829471 -81428059 + (TTA)n Simple_repeat Simple_repeat 3 56 0 4 888 658 273 55 8 chr12 39829502 39829644 -81427886 - L1_Mur2 LINE L1 -826 5477 5288 4 888 400 48 32 0 chr12 39829644 39829707 -81427823 + (TTG)n Simple_repeat Simple_repeat 2 66 0 4 888 658 325 106 16 chr12 39829707 39830071 -81427459 - L1_Mur2 LINE L1 -590 5287 4891 4 888 4683 210 70 35 chr12 39830087 39830418 -81427112 + Lx7 LINE L1 6496 6860 -836 4 888 255 31 0 0 chr12 39830418 39830450 -81427080 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 888 4683 210 70 35 chr12 39830450 39830933 -81426597 + Lx7 LINE L1 6861 7352 -344 4 888 480 35 0 0 chr12 39830933 39830991 -81426539 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 888 4683 210 70 35 chr12 39830991 39831335 -81426195 + Lx7 LINE L1 7353 7695 -1 4 888 1908 302 62 29 chr12 39831359 39832345 -81425185 - L1_Rod LINE L1 -1061 4786 3769 4 888 22 56 0 0 chr12 39832567 39832603 -81424927 + AT_rich Low_complexity Low_complexity 1 36 0 4 888 216 353 0 0 chr12 39834583 39834651 -81422879 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 888 468 0 0 0 chr12 39834651 39834703 -81422827 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 888 202 352 9 0 chr12 39834703 39834742 -81422788 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 4 888 296 188 120 65 chr12 39835663 39835771 -81421759 + Lx8 LINE L1 7358 7471 -2 4 888 1053 136 0 20 chr12 39836255 39836457 -81421073 + L1_Mus4 LINE L1 6439 6636 0 4 888 411 358 0 7 chr12 39837105 39837240 -81420290 + RSINE1 SINE B4 28 161 -4 4 888 21 0 0 0 chr12 39837779 39837800 -81419730 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 262 318 110 29 chr12 39838274 39838410 -81419120 + LTR16A1 LTR ERVL 216 362 -94 4 888 265 215 0 61 chr12 39838928 39839027 -81418503 + A-rich Low_complexity Low_complexity 5 97 0 4 888 341 137 14 0 chr12 39839153 39839226 -81418304 + L1_Mus4 LINE L1 6556 6629 -7 4 888 574 345 49 19 chr12 39839344 39839610 -81417920 + B4 SINE B4 1 274 -18 4 888 444 19 0 0 chr12 39839615 39839668 -81417862 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 888 1680 235 70 21 chr12 39840365 39840748 -81416782 - MTC LTR MaLR -17 404 3 4 888 306 50 0 0 chr12 39842363 39842403 -81415127 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 888 335 323 0 29 chr12 39842470 39842572 -81414958 - ID_B1 SINE B4 -48 176 78 4 888 481 345 181 40 chr12 39842684 39843130 -81414400 + MLT1E3 LTR MaLR 60 568 -56 4 888 498 370 32 0 chr12 39843130 39843284 -81414246 + B3A SINE B2 1 159 -39 4 888 396 0 0 0 chr12 39843306 39843350 -81414180 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 888 347 375 12 16 chr12 39843597 39843849 -81413681 + L1_Mur3 LINE L1 188 438 -7290 4 888 900 234 78 12 chr12 39843948 39844494 -81413036 + L1_Mur3 LINE L1 859 1455 -4422 4 888 1192 133 6 0 chr12 39844504 39844684 -81412846 + L1_Mus3 LINE L1 6204 6384 -254 4 888 1164 176 28 0 chr12 39844713 39844968 -81412562 + L1_Mur3 LINE L1 1474 1735 -4145 4 888 1543 162 21 39 chr12 39844972 39845393 -81412137 + RMER6D LTR ERVK 1 690 0 4 888 8464 208 39 32 chr12 39845397 39845712 -81411818 + L1_Mur3 LINE L1 1738 2055 -3825 4 888 260 70 23 0 chr12 39845712 39845755 -81411775 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 13 8464 208 39 32 chr12 39845755 39846852 -81410678 + L1_Mur3 LINE L1 2056 3140 -2740 4 889 387 0 0 0 chr12 39846852 39846895 -81410635 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 889 8464 208 39 32 chr12 39846895 39847687 -81409843 + L1_Mur3 LINE L1 3141 3958 -1922 4 889 1488 231 39 17 chr12 39847685 39848095 -81409435 + Lx6 LINE L1 5693 6111 -1349 4 889 316 289 0 11 chr12 39848978 39849069 -81408461 + B4A SINE B4 1 90 -202 4 889 885 121 170 16 chr12 39851142 39851336 -81406194 - RMER6A LTR ERVK -193 563 340 4 889 603 0 0 0 chr12 39851336 39851403 -81406127 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 889 985 152 152 0 chr12 39851403 39851634 -81405896 - L1_Mur3 LINE L1 -3105 2775 2510 4 889 1581 274 147 22 chr12 39851664 39852249 -81405281 - Lx6 LINE L1 -1 7459 6802 4 889 28840 102 48 21 chr12 39852308 39854219 -81403311 + L1Md_F2 LINE L1 380 2369 -3514 4 889 2185 110 125 11 chr12 39854219 39854586 -81402944 - RLTR9E LTR ERVK 0 409 1 4 889 28840 91 14 33 chr12 39854586 39855007 -81402523 + L1Md_F2 LINE L1 2370 2679 -3204 4 889 2204 90 15 21 chr12 39855007 39855335 -81402195 + L1Md_F2 LINE L1 6257 6582 0 4 889 28840 91 14 33 chr12 39855335 39858215 -81399315 + L1Md_F2 LINE L1 2680 5585 -298 4 889 7212 88 2 3 chr12 39858216 39859201 -81398329 + L1Md_F2 LINE L1 5587 6570 -12 4 889 300 151 161 0 chr12 39859607 39859700 -81397830 - Lx9 LINE L1 -5 7639 7532 4 889 1333 16 28 0 chr12 39859719 39859968 -81397562 + (TCTA)n Simple_repeat Simple_repeat 1 255 0 4 889 316 160 26 13 chr12 39860603 39860679 -81396851 + GA-rich Low_complexity Low_complexity 4 80 0 4 889 189 74 0 0 chr12 39860700 39860727 -81396803 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 889 792 319 30 30 chr12 39860734 39861096 -81396434 - Lx7 LINE L1 -346 7350 6989 4 889 1158 161 36 69 chr12 39861886 39862280 -81395250 + ORR1B1 LTR MaLR 42 389 -5 4 889 421 268 30 84 chr12 39863238 39863405 -81394125 + RSINE1 SINE B4 2 159 -6 4 889 477 0 0 0 chr12 39863406 39863459 -81394071 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 4 889 642 246 29 0 chr12 39863740 39863878 -81393652 - B1_Mur2 SINE Alu -6 143 2 4 889 249 292 142 41 chr12 39864832 39865100 -81392430 - L1MB8 LINE L1 -12 6166 5872 4 889 271 313 113 7 chr12 39865117 39865268 -81392262 - L1MB8 LINE L1 -348 5831 5665 4 889 699 314 158 31 chr12 39865443 39865860 -81391670 + Lx8 LINE L1 6858 7327 -146 4 889 24 67 0 0 chr12 39866799 39866844 -81390686 + AT_rich Low_complexity Low_complexity 1 45 0 4 889 22 35 0 0 chr12 39866975 39867004 -81390526 + AT_rich Low_complexity Low_complexity 1 29 0 4 889 3108 130 6 28 chr12 39867588 39868095 -81389435 + Lx LINE L1 6151 6646 -8 4 889 180 111 0 0 chr12 39868135 39868162 -81389368 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 889 673 70 10 10 chr12 39868166 39868267 -81389263 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 889 3377 255 29 145 chr12 39868782 39870287 -81387243 + RMER1C Other Other 1 1330 -12 4 889 233 278 0 48 chr12 39870389 39870509 -81387021 - MIRc SINE MIR -75 187 78 4 889 185 360 24 100 chr12 39871717 39871927 -81385603 - L2a LINE L2 -1 3425 3232 4 889 428 355 46 25 chr12 39872330 39872567 -81384963 + MLT1H-int LTR MaLR 1145 1386 -23 4 889 386 336 65 13 chr12 39873062 39873216 -81384314 + B3A SINE B2 2 163 -35 4 889 517 231 0 28 chr12 39874106 39874213 -81383317 + B1_Mur1 SINE Alu 18 121 -28 4 889 244 282 107 0 chr12 39874346 39874449 -81383081 - L1MA6 LINE L1 -185 6115 6002 4 889 420 77 0 0 chr12 39874617 39874682 -81382848 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 889 434 366 73 18 chr12 39874683 39874964 -81382566 - Lx9 LINE L1 -213 7431 7034 4 889 381 247 0 0 chr12 39874969 39875046 -81382484 + Lx7 LINE L1 5642 5718 -1978 4 889 265 214 10 10 chr12 39875146 39875250 -81382280 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 889 321 26 0 0 chr12 39875788 39875826 -81381704 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 889 500 287 93 44 chr12 39875849 39876053 -81381477 - Lx8 LINE L1 -59 7414 7201 5 889 974 301 96 60 chr12 39876277 39876852 -81380678 - L1M2 LINE L1 -1163 4980 4397 5 889 5830 119 9 7 chr12 39876852 39877738 -81379792 + Lx3B LINE L1 6086 6973 0 5 889 974 301 96 60 chr12 39877738 39877933 -81379597 - L1M2 LINE L1 -1747 4396 4182 5 889 439 258 62 31 chr12 39880417 39880545 -81376985 - B3 SINE B2 -1 215 84 5 889 23 68 0 0 chr12 39881815 39881859 -81375671 + AT_rich Low_complexity Low_complexity 1 44 0 5 889 191 167 0 53 chr12 39881992 39882049 -81375481 + T-rich Low_complexity Low_complexity 1 54 0 5 889 609 226 38 0 chr12 39882084 39882190 -81375340 - B1_Mus2 SINE Alu -37 110 1 5 889 439 281 21 16 chr12 39882849 39883023 -81374507 + ERVL-int LTR ERVL 3912 4113 -1644 5 889 306 317 48 0 chr12 39883091 39883195 -81374335 + ERVL-int LTR ERVL 4215 4323 -1391 5 889 505 237 8 0 chr12 39883225 39883343 -81374187 + ERVL-int LTR ERVL 4479 4597 -1164 5 889 2038 212 7 36 chr12 39883380 39883800 -81373730 - MTC LTR MaLR -13 408 1 5 889 720 353 42 0 chr12 39883848 39884160 -81373370 + ERVL-int LTR ERVL 4630 4954 -803 5 889 1509 214 249 20 chr12 39884350 39884829 -81372701 - Lx4B LINE L1 -5 7053 6356 5 889 730 299 109 26 chr12 39884829 39885399 -81372131 + ERVL-int LTR ERVL 5141 5757 0 5 889 268 281 12 0 chr12 39885399 39885481 -81372049 + MLT2B3 LTR ERVL 1 83 -471 5 889 606 14 0 0 chr12 39886216 39886287 -81371243 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 889 498 17 0 0 chr12 39886287 39886345 -81371185 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 889 843 39 0 0 chr12 39886761 39886864 -81370666 + (GAAAA)n Simple_repeat Simple_repeat 1 103 0 5 889 573 152 0 0 chr12 39886864 39886969 -81370561 + GA-rich Low_complexity Low_complexity 1 105 0 5 889 432 0 0 0 chr12 39887893 39887941 -81369589 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 889 249 217 13 7 chr12 39887985 39888076 -81369454 - L1MDa LINE L1 -5299 1334 1237 5 889 2498 128 2 191 chr12 39888115 39888665 -81368865 - RLTR41 LTR ERV1 0 446 1 5 889 439 287 26 9 chr12 39888728 39888844 -81368686 - B1F SINE Alu -9 140 23 5 889 242 298 21 28 chr12 39888997 39889142 -81368388 - L1MDa LINE L1 -5318 1222 1079 5 889 317 78 43 86 chr12 39889566 39889636 -81367894 - B2_Mm2 SINE B2 -2 193 127 5 889 7567 59 8 18 chr12 39889637 39890620 -81366910 + L1Md_F2 LINE L1 5587 6559 -23 5 889 1272 101 16 16 chr12 39890653 39890844 -81366686 - B2_Mm2 SINE B2 -4 191 1 5 889 1836 298 83 110 chr12 39890912 39892179 -81365351 + Lx6 LINE L1 5873 7460 0 5 889 21 0 0 0 chr12 39892489 39892510 -81365020 + AT_rich Low_complexity Low_complexity 1 21 0 5 889 772 337 75 22 chr12 39892948 39893349 -81364181 - Lx8 LINE L1 -586 6887 6466 5 889 252 86 0 0 chr12 39893436 39893471 -81364059 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 889 896 327 110 5 chr12 39893513 39893912 -81363618 + Lx8 LINE L1 6887 7327 -146 5 889 1519 178 12 4 chr12 39893912 39894171 -81363359 - ORR1A4 LTR MaLR 0 329 69 5 889 5009 121 13 8 chr12 39894208 39894961 -81362569 - Lx3A LINE L1 -8 6973 6217 5 889 21 36 0 0 chr12 39895941 39895969 -81361561 + AT_rich Low_complexity Low_complexity 1 28 0 5 889 805 339 40 0 chr12 39896501 39896775 -81360755 - Lx8 LINE L1 -270 7203 6919 5 889 365 164 14 0 chr12 39896845 39896918 -81360612 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 889 8786 122 15 19 chr12 39896925 39898810 -81358720 + Lx3B LINE L1 5101 6970 -3 5 889 1732 10 0 0 chr12 39900869 39901070 -81356460 - L1Md_A LINE L1 0 6582 6382 5 889 185 307 13 13 chr12 39901731 39901807 -81355723 - L2c LINE L2 -180 3207 3132 5 889 663 158 142 0 chr12 39902634 39902754 -81354776 - B1_Mm SINE Alu -10 137 1 5 889 207 0 0 0 chr12 39903508 39903531 -81353999 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 889 23 0 0 0 chr12 39905409 39905432 -81352098 + AT_rich Low_complexity Low_complexity 1 23 0 5 889 964 68 0 0 chr12 39905432 39905564 -81351966 - L1_Mus2 LINE L1 -1 6565 6434 5 889 183 42 0 0 chr12 39905805 39905829 -81351701 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 889 200 211 0 0 chr12 39906041 39906079 -81351451 + T-rich Low_complexity Low_complexity 5 42 0 5 889 237 83 0 0 chr12 39907394 39907430 -81350100 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 889 695 288 10 14 chr12 39907662 39907870 -81349660 + B3 SINE B2 5 211 -5 5 889 502 281 179 68 chr12 39909212 39909906 -81347624 + L1MA6 LINE L1 5401 6171 -129 5 889 385 239 101 7 chr12 39909920 39910059 -81347471 + L1MA6 LINE L1 6114 6265 -35 5 889 247 280 103 22 chr12 39910156 39910379 -81347151 + L1ME1 LINE L1 5743 5983 -196 5 889 652 356 39 28 chr12 39910605 39910891 -81346639 - B4A SINE B4 -2 290 2 5 889 24 32 0 0 chr12 39911209 39911240 -81346290 + AT_rich Low_complexity Low_complexity 1 31 0 5 889 3270 85 4 37 chr12 39911418 39911905 -81345625 - L1Md_F2 LINE L1 0 6582 6112 5 889 410 314 6 25 chr12 39912482 39912639 -81344891 + C-rich Low_complexity Low_complexity 3 156 0 5 889 352 318 64 82 chr12 39912665 39912971 -81344559 - B4A SINE B4 -18 274 11 5 889 22 0 0 0 chr12 39914852 39914874 -81342656 + AT_rich Low_complexity Low_complexity 1 22 0 5 889 886 236 22 13 chr12 39914874 39915106 -81342424 - Lx3C LINE L1 -2 6974 6741 5 889 650 113 0 40 chr12 39915123 39915224 -81342306 - B1_Mm SINE Alu -1 146 50 5 889 1745 133 107 9 chr12 39915304 39915622 -81341908 - RMER6D LTR ERVK -369 351 3 5 889 2849 190 39 1 chr12 39915628 39916276 -81341254 - L1_Mur2 LINE L1 -3978 1899 1228 5 889 1616 308 35 26 chr12 39916286 39916859 -81340671 + Lx5 LINE L1 6455 7032 -18 5 889 262 108 0 156 chr12 39917022 39917099 -81340431 + L1Md_T LINE L1 6517 6581 -1 5 889 204 314 29 10 chr12 39917207 39917310 -81340220 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 5 889 34 79 0 0 chr12 39918365 39918441 -81339089 + AT_rich Low_complexity Low_complexity 1 76 0 5 889 258 269 51 13 chr12 39918764 39918843 -81338687 + 7SLRNA srpRNA srpRNA 4 85 -229 5 889 333 0 0 0 chr12 39918874 39918911 -81338619 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 889 415 323 175 56 chr12 39919348 39919686 -81337844 - LTR40c LTR ERVL -12 453 76 5 889 366 344 67 24 chr12 39919695 39919859 -81337671 + MER63A DNA AcHobo 25 195 -15 5 889 876 171 0 0 chr12 39919904 39920068 -81337462 + CT-rich Low_complexity Low_complexity 2 165 0 5 889 5811 229 70 16 chr12 39920070 39921452 -81336078 - Lx5 LINE L1 0 7050 5595 5 889 186 167 0 0 chr12 39922282 39922318 -81335212 + T-rich Low_complexity Low_complexity 1 36 0 5 889 274 344 126 6 chr12 39923792 39923935 -81333595 + B1F2 SINE Alu 4 147 -2 5 889 8344 34 2 0 chr12 39923986 39924979 -81332551 + L1Md_T LINE L1 5588 6582 0 5 889 4352 92 48 23 chr12 39925149 39925798 -81331732 - L1Md_F2 LINE L1 -9 6573 5909 5 889 810 270 30 10 chr12 39925937 39926139 -81331391 + B3 SINE B2 11 216 0 5 889 441 0 0 0 chr12 39926725 39926774 -81330756 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 889 569 49 12 0 chr12 39927024 39927105 -81330425 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 889 214 262 224 0 chr12 39927404 39927511 -81330019 + B1F1 SINE Alu 4 134 -15 5 889 518 146 18 18 chr12 39927741 39927853 -81329677 - Lx4A LINE L1 -4 7054 6943 5 889 430 287 87 36 chr12 39927865 39928140 -81329390 - RLTR15 LTR ERVK -68 291 3 5 889 325 284 32 0 chr12 39928346 39928441 -81329089 + L1MEg LINE L1 801 898 -5186 5 889 21 0 0 0 chr12 39928763 39928784 -81328746 + AT_rich Low_complexity Low_complexity 1 21 0 5 889 213 94 0 0 chr12 39928861 39928893 -81328637 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 889 691 220 216 22 chr12 39929121 39929302 -81328228 + B3 SINE B2 1 216 0 5 889 1237 94 0 12 chr12 39929896 39930069 -81327461 + Lx2B LINE L1 5825 5995 -1005 5 889 3660 60 14 18 chr12 39930069 39930562 -81326968 - L1Md_F3 LINE L1 0 6584 6094 5 889 5311 150 37 30 chr12 39930561 39931536 -81325994 + Lx2B LINE L1 6002 6983 -17 5 889 1463 162 68 0 chr12 39931536 39931801 -81325729 + Lx2 LINE L1 6712 6994 -3 5 889 194 136 23 0 chr12 39931801 39931845 -81325685 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 5 889 5212 100 108 67 chr12 39931900 39932840 -81324690 - L1_Mus2 LINE L1 -1 6565 5587 5 889 256 258 57 17 chr12 39932840 39932953 -81324577 + ORR1D1 LTR MaLR 64 168 -202 5 889 546 43 0 0 chr12 39932954 39933023 -81324507 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 889 1099 72 0 0 chr12 39933087 39933225 -81324305 - B1_Mm SINE Alu -8 139 2 5 889 239 235 49 63 chr12 39933230 39933339 -81324191 + ORR1D1 LTR MaLR 267 374 0 5 889 582 172 63 88 chr12 39933401 39933560 -81323970 - ORR1C2 LTR MaLR 0 384 230 5 889 688 65 0 51 chr12 39933565 39933663 -81323867 - Lx2B LINE L1 -542 6458 6366 5 889 903 244 128 29 chr12 39933663 39933937 -81323593 - ORR1D1 LTR MaLR -73 301 1 5 889 483 18 0 0 chr12 39934042 39934098 -81323432 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 889 1063 322 10 7 chr12 39934907 39935198 -81322332 + B4 SINE B4 1 292 0 5 889 21 0 0 0 chr12 39936261 39936282 -81321248 + AT_rich Low_complexity Low_complexity 1 21 0 5 889 1398 229 44 32 chr12 39936287 39936603 -81320927 + RMER1B Other Other 94 413 -653 5 889 1300 178 28 53 chr12 39936574 39936858 -81320672 + RMER1B Other Other 537 813 -253 5 889 783 259 39 78 chr12 39936858 39937113 -81320417 + MTE2a LTR MaLR 135 379 0 5 889 29 70 0 0 chr12 39937535 39937592 -81319938 + AT_rich Low_complexity Low_complexity 1 57 0 5 889 486 0 0 0 chr12 39938682 39938736 -81318794 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 889 480 332 5 29 chr12 39938829 39939037 -81318493 - ORR1D2 LTR MaLR 0 370 168 5 889 1317 102 0 0 chr12 39939037 39939214 -81318316 - L1_Mus1 LINE L1 -381 6186 6010 6 889 3144 65 91 0 chr12 39939217 39939646 -81317884 + L1_Mus1 LINE L1 6100 6567 0 6 889 364 256 0 0 chr12 39939723 39939805 -81317725 - ORR1D2 LTR MaLR -284 86 5 5 889 929 316 69 21 chr12 39939891 39940224 -81317306 + ORR1E LTR MaLR 7 355 -4 6 889 2361 74 9 6 chr12 39944908 39945235 -81312295 - L1_Mus3 LINE L1 -5 6633 6306 6 889 757 314 54 4 chr12 39946190 39946468 -81311062 - B4 SINE B4 0 292 1 6 889 204 40 0 0 chr12 39946472 39946497 -81311033 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 889 645 285 75 40 chr12 39947020 39947298 -81310232 + B4A SINE B4 1 288 -4 6 889 239 358 21 0 chr12 39947799 39947894 -81309636 - Cheshire DNA MER1_type -2151 269 173 6 889 757 299 61 105 chr12 39948833 39949510 -81308020 + L1MA8 LINE L1 5587 6233 -58 6 889 296 153 69 39 chr12 39949632 39949734 -81307796 + (TAAA)n Simple_repeat Simple_repeat 4 108 0 6 889 28 0 0 0 chr12 39949822 39949850 -81307680 + AT_rich Low_complexity Low_complexity 1 28 0 6 889 24 85 0 0 chr12 39949888 39949947 -81307583 + AT_rich Low_complexity Low_complexity 1 59 0 6 889 198 0 0 0 chr12 39950497 39950519 -81307011 + (T)n Simple_repeat Simple_repeat 1 22 0 6 889 281 304 0 0 chr12 39952582 39952661 -81304869 - ID4_ SINE ID -1 82 4 6 889 234 350 51 8 chr12 39952949 39953067 -81304463 - MLT1H LTR MaLR -383 166 44 6 889 291 359 148 57 chr12 39953665 39954327 -81303203 + L2 LINE L2 1603 2324 -1095 6 889 25 65 0 0 chr12 39955422 39955468 -81302062 + AT_rich Low_complexity Low_complexity 1 46 0 6 889 9079 209 56 54 chr12 39956741 39958022 -81299508 + L1_Mur3 LINE L1 859 2074 -3806 6 889 252 0 0 0 chr12 39958022 39958050 -81299480 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 889 297 75 0 0 chr12 39958052 39958092 -81299438 + (CCA)n Simple_repeat Simple_repeat 1 40 0 6 889 9079 198 61 50 chr12 39958092 39959644 -81297886 + L1_Mur3 LINE L1 2075 3711 -2169 6 889 1338 128 33 5 chr12 39959644 39959856 -81297674 + ORR1A2 LTR MaLR 110 327 0 6 889 1401 101 0 0 chr12 39959856 39960055 -81297475 + ORR1A2-int LTR MaLR 1 199 -1764 6 889 1926 114 39 24 chr12 39960048 39960380 -81297150 + ORR1A2-int LTR MaLR 1308 1644 -319 6 889 2728 180 95 17 chr12 39960386 39960477 -81297053 - RLTR20A2 LTR ERVK 0 578 481 6 889 342 0 0 0 chr12 39960477 39960515 -81297015 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 889 2728 180 95 17 chr12 39960515 39960959 -81296571 - RLTR20A2 LTR ERVK -98 480 2 6 889 258 56 0 0 chr12 39961837 39961873 -81295657 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 6 889 309 68 0 0 chr12 39961906 39961950 -81295580 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 6 889 1094 51 7 0 chr12 39961950 39962087 -81295443 - B1_Mm SINE Alu -9 138 1 6 889 2845 312 45 38 chr12 39963942 39965560 -81291970 - Lx9 LINE L1 -334 7310 5595 6 889 17430 69 3 0 chr12 39965522 39967790 -81289740 + L1Md_F2 LINE L1 3311 5586 -297 6 889 7807 54 6 1 chr12 39967791 39968769 -81288761 + L1Md_F2 LINE L1 5588 6570 -12 6 889 375 350 79 14 chr12 39970735 39970874 -81286656 - RSINE1 SINE B4 -6 159 12 6 889 23 0 0 0 chr12 39971013 39971036 -81286494 + AT_rich Low_complexity Low_complexity 1 23 0 6 889 2669 104 5 7 chr12 39971535 39971941 -81285589 - L1_Mus4 LINE L1 -11 6625 6221 6 889 234 300 11 22 chr12 39972740 39972832 -81284698 - MLT1A1 LTR MaLR -12 396 306 6 889 21 0 0 0 chr12 39973443 39973464 -81284066 + AT_rich Low_complexity Low_complexity 1 21 0 6 889 297 313 0 0 chr12 39973758 39973825 -81283705 + B3A SINE B2 1 67 -131 6 889 1098 226 101 95 chr12 39976157 39976524 -81281006 - ORR1E LTR MaLR 0 370 2 6 890 391 259 116 0 chr12 39979962 39980074 -81277456 + MTD LTR MaLR 30 154 -265 6 890 1361 296 77 30 chr12 39980280 39980903 -81276627 - Lx9 LINE L1 -20 7624 6973 6 890 373 349 55 20 chr12 39981946 39982145 -81275385 + B4A SINE B4 65 270 -22 6 890 232 200 0 26 chr12 39982201 39982278 -81275252 + GA-rich Low_complexity Low_complexity 2 76 0 6 890 244 243 84 14 chr12 39983236 39983307 -81274223 - BC1_Mm scRNA scRNA -46 106 31 6 890 216 67 0 0 chr12 39984788 39984818 -81272712 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 890 404 191 0 21 chr12 39984891 39985035 -81272495 + GA-rich Low_complexity Low_complexity 1 141 0 6 890 9991 134 15 82 chr12 39985290 39987093 -81270437 - L1_Mus3 LINE L1 0 6638 4952 6 890 604 301 21 5 chr12 39987093 39987287 -81270243 - B3 SINE B2 -19 197 1 6 890 9991 170 29 189 chr12 39987287 39987976 -81269554 - L1_Mus3 LINE L1 -926 4951 4762 6 890 279 0 0 0 chr12 39987976 39988007 -81269523 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 890 9991 170 29 189 chr12 39988007 39988141 -81269389 - L1_Mus3 LINE L1 -1116 4761 4633 6 890 395 0 40 0 chr12 39988141 39988191 -81269339 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 6 890 9991 170 29 189 chr12 39988191 39988340 -81269190 - L1_Mus3 LINE L1 -1245 4632 4482 6 890 4035 204 44 17 chr12 39988340 39989224 -81268306 + RMER13B LTR ERVK 1 908 0 6 890 9991 170 29 189 chr12 39989224 39990612 -81266918 - L1_Mus3 LINE L1 -1396 4481 3012 6 890 6786 139 20 2 chr12 39990612 39992452 -81265078 + Lx LINE L1 4784 6646 -8 6 890 508 280 58 26 chr12 39992671 39992862 -81264668 - MLT2C2 LTR ERVL -94 370 174 6 890 459 0 0 0 chr12 39992977 39993028 -81264502 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 890 438 75 0 0 chr12 39993028 39993094 -81264436 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 890 638 294 29 0 chr12 39993099 39993235 -81264295 - RSINE1 SINE B4 -22 143 4 6 890 1855 220 38 5 chr12 39993683 39994081 -81263449 + MTD LTR MaLR 1 411 -8 6 890 227 190 19 74 chr12 39994429 39994537 -81262993 + (CTATT)n Simple_repeat Simple_repeat 4 105 0 6 890 233 29 0 29 chr12 39994869 39994904 -81262626 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 890 1055 104 0 7 chr12 39994904 39995039 -81262491 - B1_Mus2 SINE Alu -11 136 2 6 890 207 0 0 0 chr12 39995130 39995153 -81262377 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 890 348 364 116 0 chr12 39995696 39995825 -81261705 + B1F2 SINE Alu 1 144 -5 6 890 2221 229 63 17 chr12 39996303 39996888 -81260642 - Lx9 LINE L1 -7 7637 7026 6 890 1172 130 0 20 chr12 39996905 39997101 -81260429 + L1_Mm LINE L1 5042 5233 -650 6 890 570 170 0 0 chr12 39997070 39997170 -81260360 + L1_Mur1 LINE L1 3655 3754 -2132 6 890 3305 96 138 0 chr12 39997170 39997669 -81259861 + L1_Mus3 LINE L1 6066 6633 -5 6 890 703 194 71 136 chr12 39997669 39997949 -81259581 - RLTR25B LTR ERVK -25 1003 742 6 890 238 245 19 0 chr12 39998053 39998106 -81259424 - U7 snRNA snRNA -2 61 8 6 890 4335 184 32 42 chr12 39998078 39998984 -81258546 - RLTR25A LTR ERVK -206 897 1 6 890 2658 265 75 48 chr12 39998984 39999978 -81257552 - Lx9 LINE L1 -622 7022 6002 6 890 773 273 17 64 chr12 40000000 40000344 -81257186 - Lx9 LINE L1 -1457 6187 5860 1 890 795 227 26 61 chr12 40000331 40000545 -81256985 - Lx9 LINE L1 -93 5754 5544 1 890 212 0 0 35 chr12 40000545 40000574 -81256956 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 890 795 227 26 61 chr12 40000574 40000589 -81256941 - Lx9 LINE L1 -304 5543 5533 1 890 2124 226 42 85 chr12 40000575 40001225 -81256305 - Lx9 LINE L1 -523 5324 4695 1 890 2090 140 11 25 chr12 40001225 40001584 -81255946 - Lx3_Mus LINE L1 -5 7004 6651 3 890 2124 226 42 85 chr12 40001584 40001650 -81255880 - Lx9 LINE L1 -1153 4694 4639 1 890 315 312 0 12 chr12 40001858 40001939 -81255591 - ID4_ SINE ID -3 80 1 4 890 402 21 0 0 chr12 40002574 40002621 -81254909 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 890 1331 175 206 3 chr12 40002791 40003112 -81254418 + ORR1B1 LTR MaLR 1 386 -8 6 890 978 234 194 75 chr12 40003240 40003710 -81253820 + RMER4B LTR ERVK 21 546 -39 7 890 607 243 17 28 chr12 40003757 40003935 -81253595 - Lx7 LINE L1 -15 7681 7506 8 890 262 240 267 2 chr12 40003964 40004068 -81253462 - RMER4B LTR ERVK -198 268 140 9 890 423 216 137 0 chr12 40004076 40004178 -81253352 - Lx6 LINE L1 -217 7243 7128 1 890 1720 232 70 35 chr12 40004176 40004659 -81252871 + Lx6 LINE L1 6632 7131 -329 1 890 341 333 77 31 chr12 40004905 40005190 -81252340 - Lx9 LINE L1 -182 7462 7153 1 890 391 346 2 9 chr12 40005200 40005358 -81252172 - Lx9 LINE L1 -927 6717 6431 1 890 22 0 0 0 chr12 40005594 40005616 -81251914 + AT_rich Low_complexity Low_complexity 1 22 0 1 890 201 147 0 0 chr12 40006529 40006563 -81250967 + (T)n Simple_repeat Simple_repeat 1 34 0 1 890 2110 137 18 42 chr12 40006740 40007122 -81250408 + L1Md_F LINE L1 260 632 -5887 1 890 3131 68 9 48 chr12 40007122 40007582 -81249948 + L1Md_F2 LINE L1 6139 6580 -2 1 890 902 285 20 69 chr12 40007584 40007889 -81249641 - ORR1E LTR MaLR -64 295 6 1 890 225 376 13 72 chr12 40008287 40008439 -81249091 + LTR78 LTR ERV1 1075 1217 -87 1 890 204 387 169 10 chr12 40008625 40009160 -81248370 + L2a LINE L2 2550 3167 -259 1 890 428 371 41 27 chr12 40011299 40011446 -81246084 + RSINE1 SINE B4 17 165 0 1 890 239 183 50 0 chr12 40011597 40011657 -81245873 + A-rich Low_complexity Low_complexity 4 66 0 2 890 180 0 0 0 chr12 40011657 40011677 -81245853 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 2 890 240 354 0 0 chr12 40012018 40012083 -81245447 - ID2 SINE ID -8 75 11 2 890 207 0 0 0 chr12 40012868 40012891 -81244639 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 890 4192 94 8 5 chr12 40013874 40014474 -81243056 + L1_Mus3 LINE L1 6033 6634 -4 2 890 1270 263 152 11 chr12 40014897 40015339 -81242191 + MER67A LTR ERV1 38 541 -2 2 890 189 278 152 20 chr12 40015359 40015458 -81242072 + MIRc SINE MIR 127 238 -30 2 890 249 135 0 0 chr12 40015476 40015528 -81242002 + (T)n Simple_repeat Simple_repeat 1 52 0 2 890 724 322 96 50 chr12 40016277 40016600 -81240930 - MTE2b LTR MaLR 0 379 42 2 890 225 203 0 59 chr12 40016544 40016612 -81240918 - MT2A LTR ERVL -438 95 32 2 890 450 228 0 2 chr12 40016701 40016796 -81240734 - MTE2b LTR MaLR -278 101 9 3 890 1562 314 115 23 chr12 40016877 40017607 -81239923 + Lx8 LINE L1 6581 7377 -96 3 890 920 304 62 13 chr12 40017715 40018252 -81239278 + L1M3 LINE L1 3252 3814 -2326 3 890 402 305 16 66 chr12 40018246 40018493 -81239037 + L1M2 LINE L1 2778 3011 -3834 3 890 242 277 79 0 chr12 40019186 40019287 -81238243 - L1M2 LINE L1 -3834 2309 2201 3 890 24 53 0 0 chr12 40019461 40019499 -81238031 + AT_rich Low_complexity Low_complexity 1 38 0 3 890 7736 60 7 1 chr12 40019525 40020535 -81236995 - L1Md_F2 LINE L1 -12 6570 5552 3 890 234 207 0 0 chr12 40020684 40020742 -81236788 + (CTAA)n Simple_repeat Simple_repeat 3 60 0 3 890 10205 73 14 10 chr12 40021159 40022002 -81235528 + L1_Mm LINE L1 4404 5232 -651 3 890 468 0 0 0 chr12 40022002 40022054 -81235476 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 890 10205 73 14 10 chr12 40022054 40022571 -81234959 + L1_Mm LINE L1 5233 5766 -117 3 890 835 75 64 50 chr12 40022571 40022712 -81234818 + L1_Mus1 LINE L1 6424 6566 -1 4 890 10205 73 14 10 chr12 40022712 40022736 -81234794 + L1_Mm LINE L1 5767 5792 -91 3 890 1870 242 57 14 chr12 40022848 40023288 -81234242 + Lx5 LINE L1 6552 7010 -40 4 890 224 226 0 61 chr12 40023447 40023546 -81233984 + T-rich Low_complexity Low_complexity 2 94 0 4 890 1377 263 86 61 chr12 40023639 40024454 -81233076 - L1MA6 LINE L1 -9 6291 5457 4 890 291 157 0 0 chr12 40024612 40024663 -81232867 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 890 432 0 0 0 chr12 40024684 40024732 -81232798 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 890 2415 43 49 6 chr12 40024736 40025060 -81232470 - ORR1A1 LTR MaLR -8 338 1 4 890 409 306 181 34 chr12 40025385 40025622 -81231908 + Lx6 LINE L1 7114 7385 -75 4 890 23 54 0 0 chr12 40025823 40025860 -81231670 + AT_rich Low_complexity Low_complexity 1 37 0 4 890 1015 83 7 7 chr12 40026567 40026713 -81230817 + B1_Mm SINE Alu 2 147 0 4 890 225 0 0 0 chr12 40026713 40026738 -81230792 + (A)n Simple_repeat Simple_repeat 1 25 0 5 890 709 206 158 15 chr12 40026757 40027023 -81230507 + Lx9 LINE L1 7341 7644 0 5 890 743 59 10 0 chr12 40029175 40029276 -81228254 + (GA)n Simple_repeat Simple_repeat 2 103 0 5 890 191 189 0 19 chr12 40030222 40030276 -81227254 + GA-rich Low_complexity Low_complexity 2 54 0 5 890 273 98 0 0 chr12 40030365 40030406 -81227124 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 890 22 0 0 0 chr12 40031280 40031302 -81226228 + AT_rich Low_complexity Low_complexity 1 22 0 5 890 21 71 0 0 chr12 40031373 40031415 -81226115 + AT_rich Low_complexity Low_complexity 1 42 0 5 890 247 200 0 20 chr12 40031417 40031468 -81226062 + CT-rich Low_complexity Low_complexity 1 50 0 5 890 356 138 0 22 chr12 40032151 40032240 -81225290 + (TCTG)n Simple_repeat Simple_repeat 2 88 0 5 890 273 75 0 0 chr12 40032283 40032323 -81225207 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 890 2534 255 115 35 chr12 40034823 40035725 -81221805 - Lx6 LINE L1 -26 7434 6227 6 890 582 284 74 10 chr12 40035755 40035921 -81221609 + B3 SINE B2 1 181 -35 6 890 609 52 0 0 chr12 40035921 40035998 -81221532 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 890 582 284 74 10 chr12 40035998 40036034 -81221496 + B3 SINE B2 182 215 -1 6 890 201 108 0 0 chr12 40037183 40037220 -81220310 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 890 306 0 0 0 chr12 40037220 40037254 -81220276 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 890 1601 213 68 153 chr12 40037534 40038016 -81219514 + RMER4B LTR ERVK 17 467 -118 6 890 4650 56 0 5 chr12 40038140 40038729 -81218801 - L1Md_F2 LINE L1 -3 6579 5994 6 890 294 371 25 38 chr12 40038933 40039090 -81218440 - LTR16D LTR ERVL -329 322 168 6 890 232 329 35 58 chr12 40039451 40039538 -81217992 + B4A SINE B4 195 279 -13 6 890 26 30 0 0 chr12 40039640 40039673 -81217857 + AT_rich Low_complexity Low_complexity 1 33 0 6 890 214 184 0 20 chr12 40040841 40040891 -81216639 + GA-rich Low_complexity Low_complexity 1 49 0 7 890 228 186 0 0 chr12 40040891 40040950 -81216580 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 890 23 68 0 0 chr12 40041504 40041548 -81215982 + AT_rich Low_complexity Low_complexity 1 44 0 7 890 29 90 0 0 chr12 40041649 40041727 -81215803 + AT_rich Low_complexity Low_complexity 1 78 0 7 890 38 0 0 0 chr12 40041784 40041822 -81215708 + AT_rich Low_complexity Low_complexity 1 38 0 7 890 23 68 0 0 chr12 40042391 40042435 -81215095 + AT_rich Low_complexity Low_complexity 1 44 0 7 890 2608 249 50 72 chr12 40042594 40042761 -81214769 - Lx7 LINE L1 -21 7675 7523 7 890 777 51 0 0 chr12 40042761 40042859 -81214671 + (GAGAA)n Simple_repeat Simple_repeat 3 100 0 7 890 2608 223 65 85 chr12 40042859 40043510 -81214020 - Lx7 LINE L1 -174 7522 6912 7 890 512 288 4 64 chr12 40043511 40043700 -81213830 - B3A SINE B2 -1 215 36 7 890 323 249 102 45 chr12 40044226 40044403 -81213127 - Lx8 LINE L1 0 7473 7287 7 890 729 291 21 26 chr12 40044915 40045214 -81212316 - MTC LTR MaLR -23 396 6 8 890 22 0 0 0 chr12 40046040 40046062 -81211468 + AT_rich Low_complexity Low_complexity 1 22 0 8 890 251 319 0 71 chr12 40046176 40046331 -81211199 + HERVL74-int LTR ERVL 4789 4932 -753 8 890 392 221 26 97 chr12 40046693 40046848 -81210682 - L1MA8 LINE L1 -346 5945 5802 8 890 225 65 0 0 chr12 40046855 40046886 -81210644 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 890 450 65 0 0 chr12 40046886 40046948 -81210582 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 890 599 287 36 20 chr12 40046959 40047211 -81210319 - L1MA8 LINE L1 -516 5775 5520 8 890 252 335 181 31 chr12 40047851 40048011 -81209519 + MER74C LTR ERVL 44 227 -233 8 890 29 0 0 0 chr12 40048855 40048884 -81208646 + AT_rich Low_complexity Low_complexity 1 29 0 8 890 234 62 0 0 chr12 40050120 40050152 -81207378 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 890 279 0 0 0 chr12 40050345 40050376 -81207154 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 890 278 294 21 14 chr12 40050911 40051056 -81206474 + (TA)n Simple_repeat Simple_repeat 2 147 0 9 890 30 0 0 0 chr12 40051660 40051690 -81205840 + AT_rich Low_complexity Low_complexity 1 30 0 9 890 519 60 0 0 chr12 40053352 40053419 -81204111 + (CCTG)n Simple_repeat Simple_repeat 4 70 0 9 890 467 249 61 22 chr12 40053473 40053701 -81203829 - Lx2B LINE L1 -69 6989 6658 9 890 607 275 40 0 chr12 40053933 40054082 -81203448 + B3A SINE B2 2 156 -42 9 890 324 0 0 0 chr12 40054092 40054128 -81203402 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 890 369 102 0 0 chr12 40054130 40054189 -81203341 + (TA)n Simple_repeat Simple_repeat 1 59 0 9 890 22 35 0 0 chr12 40054226 40054255 -81203275 + AT_rich Low_complexity Low_complexity 1 29 0 9 890 22 35 0 0 chr12 40054275 40054304 -81203226 + AT_rich Low_complexity Low_complexity 1 29 0 9 890 772 241 0 14 chr12 40054622 40054780 -81202750 + B3 SINE B2 1 154 -62 9 890 410 0 20 0 chr12 40054780 40054830 -81202700 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 890 421 282 15 150 chr12 40054830 40054871 -81202659 + B2_Mm2 SINE B2 143 173 -22 9 890 252 0 0 0 chr12 40055057 40055085 -81202445 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 890 640 81 23 31 chr12 40055994 40056122 -81201408 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 1 890 29 0 0 0 chr12 40056206 40056235 -81201295 + AT_rich Low_complexity Low_complexity 1 29 0 1 890 351 0 0 0 chr12 40057438 40057477 -81200053 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 890 383 271 86 74 chr12 40057491 40057654 -81199876 - B2_Mm2 SINE B2 -30 165 1 1 890 180 0 0 0 chr12 40059349 40059369 -81198161 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 890 2690 72 50 11 chr12 40059373 40059752 -81197778 - MTA_Mm LTR MaLR 0 396 3 1 890 24 0 0 0 chr12 40059774 40059798 -81197732 + AT_rich Low_complexity Low_complexity 1 24 0 1 890 245 306 24 16 chr12 40059812 40059935 -81197595 + (TATG)n Simple_repeat Simple_repeat 4 127 0 1 890 286 320 0 0 chr12 40059831 40059906 -81197624 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 890 1608 104 35 12 chr12 40059963 40060217 -81197313 + ORR1A4 LTR MaLR 1 260 -69 1 890 296 296 92 6 chr12 40060356 40060519 -81197011 - L1M3 LINE L1 -778 5513 5337 1 890 2542 159 47 92 chr12 40060524 40061173 -81196357 - RMER6C LTR ERVK 0 690 1 1 890 392 248 205 22 chr12 40061345 40061613 -81195917 - L1M3 LINE L1 -982 5158 4842 1 890 302 287 25 85 chr12 40063300 40063418 -81194112 - Lx8 LINE L1 -436 7037 6927 1 890 1073 83 21 0 chr12 40063706 40063851 -81193679 - B1_Mus1 SINE Alu 0 148 1 1 890 180 0 0 0 chr12 40063860 40063880 -81193650 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 1 890 436 378 71 64 chr12 40066738 40067004 -81190526 + B4A SINE B4 7 274 -18 1 890 242 56 0 27 chr12 40067042 40067079 -81190451 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 890 30 27 0 0 chr12 40068126 40068163 -81189367 + AT_rich Low_complexity Low_complexity 1 37 0 1 890 4438 57 4 4 chr12 40069248 40069811 -81187719 - L1_Mus1 LINE L1 0 6567 6005 1 890 6914 48 1 16 chr12 40071780 40072661 -81184869 - L1Md_F2 LINE L1 -4 6578 5711 1 890 264 287 704 0 chr12 40074171 40074286 -81183244 + RMER30 DNA MER1_type 7 202 0 1 890 203 119 23 23 chr12 40075305 40075348 -81182182 + T-rich Low_complexity Low_complexity 4 46 0 1 890 597 254 155 11 chr12 40077001 40077188 -81180342 + B3 SINE B2 1 214 -2 1 890 661 243 0 26 chr12 40078021 40078173 -81179357 - B1_Mur2 SINE Alu -1 148 1 1 890 351 0 0 0 chr12 40078791 40078830 -81178700 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 890 23 54 0 0 chr12 40080084 40080121 -81177409 + AT_rich Low_complexity Low_complexity 1 37 0 1 890 454 239 41 21 chr12 40080479 40080624 -81176906 - Lx6 LINE L1 -17 7443 7296 1 890 407 241 175 33 chr12 40080627 40080747 -81176783 - Lx6 LINE L1 -509 6951 6815 1 890 2560 281 85 58 chr12 40081136 40082075 -81175455 - L1_Rod LINE L1 -658 5189 4224 1 890 4982 58 13 0 chr12 40082075 40082700 -81174830 - L1Md_F2 LINE L1 -14 6568 5936 1 890 2560 281 85 58 chr12 40082700 40083293 -81174237 - L1_Rod LINE L1 -1624 4223 3616 1 890 5045 184 123 29 chr12 40083325 40084769 -81172761 - L1_Mur3 LINE L1 -3139 2741 1148 1 890 3741 157 57 27 chr12 40084771 40085470 -81172060 + RMER6D LTR ERVK 1 720 0 1 890 916 307 79 56 chr12 40085470 40085798 -81171732 - L1_Mur3 LINE L1 -6577 1151 826 1 890 1110 95 0 0 chr12 40085798 40085946 -81171584 + B1_Mus1 SINE Alu 1 148 0 1 890 916 307 79 56 chr12 40085946 40086186 -81171344 - L1_Mur3 LINE L1 -6903 825 570 1 890 38288 42 0 15 chr12 40086286 40092403 -81165127 - L1Md_A LINE L1 -1 6581 557 1 890 10702 136 32 53 chr12 40092488 40095791 -81161739 + MusHAL1 LINE L1 756 3914 0 1 890 197 65 32 0 chr12 40096272 40096303 -81161227 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 890 1092 86 0 0 chr12 40096483 40096623 -81160907 + B1_Mus1 SINE Alu 2 141 -7 1 890 708 290 57 0 chr12 40097100 40097293 -81160237 - MTE2b LTR MaLR -170 209 6 1 890 404 344 22 30 chr12 40097345 40097480 -81160050 - ID_B1 SINE B4 -3 221 88 1 890 617 272 34 51 chr12 40098572 40098750 -81158780 + B3A SINE B2 9 183 -15 1 890 254 250 163 0 chr12 40100287 40100379 -81157151 - PB1D10 SINE Alu -1 116 10 1 890 228 67 0 0 chr12 40100604 40100634 -81156896 + (T)n Simple_repeat Simple_repeat 1 30 0 1 890 3918 78 73 0 chr12 40100667 40101202 -81156328 - L1_Mus2 LINE L1 -1 6565 5992 1 890 4241 82 4 0 chr12 40101214 40101772 -81155758 - L1_Mm LINE L1 -106 5777 5218 1 890 3516 147 26 128 chr12 40101931 40102339 -81155191 - RLTR21 LTR ERVK -2 1570 1210 1 890 381 22 0 0 chr12 40102339 40102385 -81155145 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 890 3516 147 26 128 chr12 40102385 40102471 -81155059 - RLTR21 LTR ERVK -363 1209 1128 1 890 195 42 0 0 chr12 40102471 40102495 -81155035 + (CATA)n Simple_repeat Simple_repeat 1 24 0 1 890 3516 147 26 128 chr12 40102495 40102797 -81154733 - RLTR21 LTR ERVK -445 1127 854 1 890 726 236 135 15 chr12 40102797 40103064 -81154466 - Lx7 LINE L1 -1257 6439 6141 1 890 565 285 129 39 chr12 40103210 40103587 -81153943 + RMER20A LTR ERVK 1 426 -201 1 890 765 256 53 43 chr12 40103622 40103872 -81153658 + Lx7 LINE L1 6687 6930 -530 1 890 212 244 46 30 chr12 40103927 40104058 -81153472 + T-rich Low_complexity Low_complexity 2 134 0 1 890 323 186 0 41 chr12 40104174 40104247 -81153283 - Lx5 LINE L1 -107 6943 6874 1 890 328 194 9 18 chr12 40104326 40104436 -81153094 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 1 890 608 124 0 19 chr12 40104546 40104653 -81152877 + L1_Mus2 LINE L1 6462 6566 0 1 890 1424 166 63 75 chr12 40104939 40105272 -81152258 - ORR1A4 LTR MaLR 0 329 1 1 890 467 161 101 59 chr12 40105340 40105353 -81152177 - B1_Mus1 SINE Alu 0 148 139 1 890 365 0 0 22 chr12 40105353 40105399 -81152131 + (TTG)n Simple_repeat Simple_repeat 2 46 0 1 890 467 161 101 59 chr12 40105399 40105504 -81152026 - B1_Mus1 SINE Alu -10 138 25 1 890 312 346 28 0 chr12 40105597 40105704 -81151826 - MIRc SINE MIR -26 242 133 1 890 268 349 19 32 chr12 40106787 40106941 -81150589 + MER3 DNA MER1_type 53 204 -5 1 890 1255 129 0 0 chr12 40107064 40107258 -81150272 + B2_Mm2 SINE B2 1 194 -1 1 890 242 246 40 40 chr12 40107620 40107696 -81149834 + MIR SINE MIR 66 141 -121 1 111 300 373 57 16 chr12 40107831 40108079 -81149451 + L1M3d LINE L1 766 1023 -5630 1 891 255 323 152 8 chr12 40108370 40108495 -81149035 + L1M3d LINE L1 868 1010 -5643 1 891 219 69 0 0 chr12 40109767 40109796 -81147734 + (TCC)n Simple_repeat Simple_repeat 2 30 0 1 891 436 155 12 0 chr12 40109796 40109880 -81147650 - L1_Mur3 LINE L1 -4364 1516 1432 1 891 5365 210 29 42 chr12 40109912 40110161 -81147369 + L1_Mur3 LINE L1 1868 2089 -3791 1 891 275 0 29 0 chr12 40110161 40110196 -81147334 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 891 5365 210 29 42 chr12 40110196 40110984 -81146546 + L1_Mur3 LINE L1 2090 2883 -2997 1 891 204 40 0 0 chr12 40110984 40111009 -81146521 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 891 5365 210 29 42 chr12 40111009 40111458 -81146072 + L1_Mur3 LINE L1 2884 3336 -2544 1 891 1209 336 32 23 chr12 40111464 40111993 -81145537 + Lx8 LINE L1 6850 7383 -90 1 891 256 314 91 29 chr12 40112144 40112354 -81145176 - L1MB8 LINE L1 -76 6102 5880 1 891 816 88 0 0 chr12 40112427 40112541 -81144989 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 891 477 326 48 7 chr12 40112918 40113227 -81144303 - L1MB8 LINE L1 -1037 5109 4788 1 891 33538 85 5 2 chr12 40113788 40118388 -81139142 - L1Md_F2 LINE L1 -2 6580 1983 1 891 345 24 0 0 chr12 40118388 40118430 -81139100 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 891 33538 90 16 2 chr12 40118430 40119337 -81138193 - L1Md_F2 LINE L1 -3901 1982 1036 1 891 1484 148 11 84 chr12 40119337 40119684 -81137846 + RLTRETN_Mm LTR ERVK 1 322 0 1 891 4412 122 72 7 chr12 40119684 40120216 -81137314 - L1Md_F2 LINE L1 -5581 1035 480 1 891 474 123 14 0 chr12 40120216 40120289 -81137241 - L1VL1 LINE L1 -6348 74 1 1 891 293 145 16 0 chr12 40120633 40120695 -81136835 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 891 26 30 0 0 chr12 40120986 40121019 -81136511 + AT_rich Low_complexity Low_complexity 1 33 0 1 891 337 250 41 57 chr12 40122148 40122271 -81135259 + L1ME3A LINE L1 6041 6161 -12 1 891 24 32 0 0 chr12 40123075 40123106 -81134424 + AT_rich Low_complexity Low_complexity 1 31 0 1 891 312 27 0 0 chr12 40124118 40124155 -81133375 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1 891 420 20 0 0 chr12 40125254 40125303 -81132227 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 891 6542 131 18 13 chr12 40125477 40126835 -81130695 - L1_Mus3 LINE L1 -1 6637 5269 1 891 2994 104 11 2 chr12 40126846 40127287 -81130243 - L1_Mus3 LINE L1 -6 6632 6188 1 891 3340 81 66 3 chr12 40127287 40128055 -81129475 + L1_Mus3 LINE L1 5330 6166 -472 1 891 11468 119 19 1 chr12 40128052 40129837 -81127693 - L1_Mm LINE L1 -580 5303 3487 1 891 299 132 19 0 chr12 40129835 40129888 -81127642 - L1_Mur3 LINE L1 -516 5364 5311 1 891 395 92 46 0 chr12 40129888 40129953 -81127577 + B1_Mm SINE Alu 79 146 -1 1 891 181 53 25 50 chr12 40129954 40129994 -81127536 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 891 2170 174 99 12 chr12 40129994 40130488 -81127042 - L1_Mur3 LINE L1 -564 5316 4780 1 891 2901 174 30 22 chr12 40130871 40131411 -81126119 - RMER19B LTR ERVK -358 544 1 1 891 18232 138 29 27 chr12 40131411 40133258 -81124272 - MurERV4_19-int LTR ERVK 0 5780 3970 1 891 207 0 0 0 chr12 40133258 40133281 -81124249 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 891 357 24 0 0 chr12 40133281 40133322 -81124208 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 891 18232 138 29 27 chr12 40133322 40134811 -81122719 - MurERV4_19-int LTR ERVK -1811 3969 2438 1 891 3965 186 223 13 chr12 40134865 40135283 -81122247 - L1_Mur3 LINE L1 -1114 4766 4347 1 891 267 79 0 0 chr12 40135293 40135331 -81122199 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 1 891 1083 90 0 20 chr12 40135331 40135467 -81122063 - B1_Mm SINE Alu -12 135 1 1 891 3965 197 234 13 chr12 40135467 40136475 -81121055 - L1_Mur3 LINE L1 -1534 4346 2998 1 891 5007 71 25 12 chr12 40136522 40137210 -81120320 - L1_Mus2 LINE L1 0 6566 5870 1 891 4998 106 3 1 chr12 40137210 40137931 -81119599 + L1_Mus2 LINE L1 5158 5879 -4 1 891 5096 194 119 19 chr12 40137955 40139338 -81118192 - L1_Mur3 LINE L1 -2915 2965 1444 1 891 227 337 12 0 chr12 40139413 40139496 -81118034 + MTEb LTR MaLR 294 377 -2 1 891 24 0 0 0 chr12 40140526 40140550 -81116980 + AT_rich Low_complexity Low_complexity 1 24 0 1 891 524 97 11 0 chr12 40140638 40140731 -81116799 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 891 5816 224 30 22 chr12 40140824 40142112 -81115418 - Lx5 LINE L1 0 7050 5754 1 891 1134 158 38 0 chr12 40142100 40142309 -81115221 + Lx5 LINE L1 5528 5744 -133 1 891 4128 89 0 2 chr12 40142305 40142855 -81114675 - L1_Mus3 LINE L1 -301 6337 5789 1 891 2136 103 9 32 chr12 40142855 40143197 -81114333 + L1_Mus3 LINE L1 6297 6630 -8 1 891 295 249 41 31 chr12 40143255 40143342 -81114188 - B4A SINE B4 -56 236 157 1 891 8755 110 15 9 chr12 40143513 40145170 -81112360 - Lx3A LINE L1 0 6981 5321 1 891 8496 36 5 3 chr12 40145803 40147788 -81109742 - L1Md_T LINE L1 0 6582 4916 2 891 2803 204 19 91 chr12 40148145 40148568 -81108962 + Lx7 LINE L1 6957 7350 -346 2 891 198 0 0 0 chr12 40148568 40148590 -81108940 + (TTTAA)n Simple_repeat Simple_repeat 4 25 0 2 891 2803 204 19 91 chr12 40148590 40148899 -81108631 + Lx7 LINE L1 7351 7636 -60 2 891 564 42 0 0 chr12 40150605 40150676 -81106854 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 891 330 171 0 0 chr12 40150676 40150746 -81106784 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 891 180 0 0 0 chr12 40150924 40150944 -81106586 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 2 891 567 29 0 0 chr12 40150982 40151051 -81106479 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 891 377 214 10 0 chr12 40151094 40151192 -81106338 + GA-rich Low_complexity Low_complexity 2 100 0 2 891 324 127 0 0 chr12 40151255 40151310 -81106220 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 891 198 232 107 80 chr12 40151551 40151626 -81105904 - MIRb SINE MIR -65 203 127 2 891 231 114 0 0 chr12 40155891 40155926 -81101604 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 891 22 0 0 0 chr12 40155998 40156020 -81101510 + AT_rich Low_complexity Low_complexity 1 22 0 2 891 1234 296 45 15 chr12 40156950 40157283 -81100247 - MTE2b LTR MaLR -34 345 3 2 891 1280 325 122 12 chr12 40157407 40157914 -81099616 - MTE2b-int LTR MaLR -577 1003 441 2 891 459 353 42 56 chr12 40157923 40158229 -81099301 - MTE2b-int LTR MaLR -1034 546 245 2 891 2393 59 15 18 chr12 40158237 40158565 -81098965 + IAPLTR2b LTR ERVK 1 327 0 2 891 9918 61 64 77 chr12 40158566 40160246 -81097284 + IAPEz-int LTR ERVK 9 1581 -4900 2 891 19140 26 8 2 chr12 40160246 40162472 -81095058 + IAPEz-int LTR ERVK 4241 6479 -2 2 891 2390 65 15 15 chr12 40162474 40162801 -81094729 + IAPLTR2b LTR ERVK 1 327 0 2 891 404 270 128 36 chr12 40162806 40163002 -81094528 - MTE2b-int LTR MaLR -1044 214 1 2 891 1354 305 41 0 chr12 40163002 40163366 -81094164 - MTE2b LTR MaLR 0 379 1 2 891 1404 126 30 4 chr12 40164360 40164591 -81092939 + Lx LINE L1 6418 6654 0 2 891 351 0 0 0 chr12 40164605 40164644 -81092886 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 891 1249 206 8 12 chr12 40164955 40165205 -81092325 - Lx9 LINE L1 -418 7226 6978 2 891 1578 185 38 38 chr12 40165246 40165612 -81091918 + MTC-int LTR MaLR 872 1237 -21 2 891 2101 194 12 43 chr12 40165628 40166044 -81091486 + MTC LTR MaLR 6 408 -13 2 891 894 68 0 0 chr12 40166285 40166403 -81091127 + (GAAA)n Simple_repeat Simple_repeat 4 121 0 2 891 916 251 55 42 chr12 40166707 40166955 -81090575 + L1_Mur3 LINE L1 886 1140 -6588 2 891 2330 107 66 11 chr12 40166955 40167333 -81090197 + Lx2 LINE L1 6598 6996 -1 2 891 916 251 55 42 chr12 40167333 40167466 -81090064 + L1_Mur3 LINE L1 1141 1271 -6457 2 891 1140 63 0 0 chr12 40167467 40167610 -81089920 + B1_Mus2 SINE Alu 2 144 -3 2 891 1380 206 22 0 chr12 40167642 40167919 -81089611 - L1_Mur2 LINE L1 -2108 3769 3487 2 891 1077 83 7 0 chr12 40167920 40168065 -81089465 + B1_Mus2 SINE Alu 2 147 0 2 891 983 217 42 20 chr12 40168078 40168384 -81089146 + L1_Mur3 LINE L1 1257 1569 -4311 2 891 2586 199 37 37 chr12 40168393 40169010 -81088520 + L1_Mur3 LINE L1 2266 2885 -2992 2 891 948 158 19 87 chr12 40169010 40169218 -81088312 + B2_Mm2 SINE B2 1 194 -1 2 891 2586 199 37 37 chr12 40169218 40169309 -81088221 + L1_Mur3 LINE L1 2886 2974 -2903 2 891 477 0 0 0 chr12 40169326 40169379 -81088151 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 2 891 1657 29 9 9 chr12 40169379 40169585 -81087945 - Lx3_Mus LINE L1 -425 6584 6377 2 891 2033 110 12 24 chr12 40169584 40169919 -81087611 + Lx3_Mus LINE L1 6050 6380 -629 2 891 239 216 44 48 chr12 40170474 40170591 -81086939 - RLTR11A LTR ERVK -355 222 107 2 891 538 369 54 0 chr12 40171561 40171783 -81085747 - B4A SINE B4 -44 248 15 2 891 1096 82 7 0 chr12 40172931 40173077 -81084453 + B1_Mm SINE Alu 1 147 0 2 891 2259 75 119 11 chr12 40173711 40174063 -81083467 + RLTR10 LTR ERVK 1 390 0 2 891 208 300 0 0 chr12 40175052 40175102 -81082428 + CT-rich Low_complexity Low_complexity 2 51 0 2 891 188 0 74 0 chr12 40176036 40176063 -81081467 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 891 749 99 45 8 chr12 40178698 40178830 -81078700 - Lx LINE L1 -7 6647 6511 2 891 544 274 0 8 chr12 40179117 40179242 -81078288 + B3A SINE B2 37 160 -38 2 891 387 0 0 0 chr12 40179278 40179321 -81078209 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 891 23 0 0 0 chr12 40179321 40179344 -81078186 + AT_rich Low_complexity Low_complexity 1 23 0 2 891 475 289 60 35 chr12 40179823 40180024 -81077506 - B3 SINE B2 -10 206 1 2 891 653 114 0 9 chr12 40180415 40180521 -81077009 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 2 891 530 149 0 10 chr12 40180966 40181068 -81076462 + GA-rich Low_complexity Low_complexity 3 103 0 2 891 383 303 88 98 chr12 40181074 40181381 -81076149 - ORR1E LTR MaLR -53 306 3 2 891 369 0 0 0 chr12 40181761 40181802 -81075728 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 891 250 286 46 37 chr12 40181890 40181999 -81075531 + L1M4 LINE L1 5466 5575 -603 2 891 198 0 0 0 chr12 40182299 40182321 -81075209 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 891 45 34 0 0 chr12 40182321 40182380 -81075150 + AT_rich Low_complexity Low_complexity 1 59 0 2 891 256 361 57 8 chr12 40182414 40182537 -81074993 + B1_Mus1 SINE Alu 13 141 -7 2 891 209 260 27 14 chr12 40182586 40182660 -81074870 + (CATA)n Simple_repeat Simple_repeat 4 78 0 2 891 22 0 0 0 chr12 40183935 40183957 -81073573 + AT_rich Low_complexity Low_complexity 1 22 0 2 891 2542 89 3 60 chr12 40184062 40184443 -81073087 + RLTR10D LTR ERVK 1 359 0 2 891 260 354 88 0 chr12 40185642 40185755 -81071775 + MTE2a LTR MaLR 20 142 -237 2 891 386 353 12 17 chr12 40185656 40185829 -81071701 + MT2A LTR ERVL 41 212 -321 2 891 1029 39 0 0 chr12 40186129 40186258 -81071272 + B1_Mm SINE Alu 14 142 -5 2 891 210 37 0 0 chr12 40186265 40186292 -81071238 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 891 204 216 0 0 chr12 40187282 40187319 -81070211 + (TATG)n Simple_repeat Simple_repeat 2 38 0 2 891 2948 255 73 35 chr12 40188538 40190144 -81067386 + RMER1B Other Other 1 1049 -17 2 891 31 0 0 0 chr12 40190344 40190375 -81067155 + AT_rich Low_complexity Low_complexity 1 31 0 2 891 18742 174 36 9 chr12 40190562 40193805 -81063725 + L1_Mur1 LINE L1 738 4078 -1808 2 891 576 0 0 0 chr12 40193805 40193869 -81063661 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 891 18742 172 39 4 chr12 40193869 40194621 -81062909 + L1_Mur1 LINE L1 4079 4859 -1027 2 891 432 0 0 0 chr12 40194621 40194669 -81062861 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 2 891 1148 111 0 6 chr12 40194669 40194850 -81062680 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 891 18742 172 39 4 chr12 40194850 40195066 -81062464 + L1_Mur1 LINE L1 4860 5075 -811 2 891 9429 120 45 6 chr12 40195068 40195221 -81062309 - L1_Mur2 LINE L1 -2987 2890 2733 2 891 3654 70 8 0 chr12 40195221 40195690 -81061840 - L1_Mus2 LINE L1 -1 6565 6093 2 891 9429 120 45 6 chr12 40195690 40196336 -81061194 - L1_Mur2 LINE L1 -3145 2732 2052 2 891 441 0 0 0 chr12 40196336 40196385 -81061145 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 891 9429 127 38 5 chr12 40196385 40197824 -81059706 - L1_Mur2 LINE L1 -3826 2051 572 2 891 28 48 0 0 chr12 40199271 40199313 -81058217 + AT_rich Low_complexity Low_complexity 1 42 0 2 891 655 358 11 0 chr12 40199379 40199558 -81057972 + B3A SINE B2 2 182 -16 2 891 279 133 0 0 chr12 40199562 40199607 -81057923 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2 891 290 67 22 0 chr12 40200498 40200543 -81056987 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2 891 810 311 62 10 chr12 40200641 40200946 -81056584 - MLT1B LTR MaLR -8 382 62 2 891 33 105 0 0 chr12 40201865 40201989 -81055541 + AT_rich Low_complexity Low_complexity 1 124 0 2 891 414 0 0 0 chr12 40202639 40202685 -81054845 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 891 907 272 139 13 chr12 40203155 40203584 -81053946 + Lx7 LINE L1 6844 7308 -388 2 891 288 0 0 0 chr12 40203770 40203802 -81053728 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 891 5648 131 18 25 chr12 40203802 40204746 -81052784 - Lx3B LINE L1 -12 6961 6025 2 891 4683 188 84 14 chr12 40204776 40205756 -81051774 + Lx5 LINE L1 6000 7047 -3 2 891 2959 125 4 43 chr12 40205942 40206435 -81051095 + MT2C_Mm LTR ERVL 1 474 -1 2 891 535 328 69 24 chr12 40206435 40206676 -81050854 - B4A SINE B4 -40 252 1 2 891 258 148 0 0 chr12 40207363 40207417 -81050113 + (T)n Simple_repeat Simple_repeat 1 54 0 2 891 249 194 45 0 chr12 40208586 40208653 -81048877 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 2 891 767 189 18 20 chr12 40210181 40210355 -81047175 + B3 SINE B2 1 181 -12 2 891 458 240 60 33 chr12 40210979 40211130 -81046400 - MTD LTR MaLR -264 155 1 2 891 736 203 88 25 chr12 40211449 40211687 -81045843 + Lx9 LINE L1 7392 7644 0 2 891 4953 59 17 6 chr12 40211884 40212515 -81045015 + L1Md_F2 LINE L1 5933 6570 -12 2 891 547 194 8 61 chr12 40212532 40212664 -81044866 - MYSERV16_I-int LTR ERVK -1183 1143 1019 2 891 5150 62 3 0 chr12 40214606 40215267 -81042263 - L1Md_F2 LINE L1 -3 6579 5917 2 891 1517 128 191 3 chr12 40215683 40215992 -81041538 + ORR1A2 LTR MaLR 3 338 -8 2 891 5062 81 7 9 chr12 40216571 40217272 -81040258 - L1_Mus3 LINE L1 0 6638 5939 2 891 264 0 0 0 chr12 40217274 40217305 -81040225 + L1_Mus3 LINE L1 5907 5937 -701 2 891 180 0 0 0 chr12 40217320 40217340 -81040190 + (A)n Simple_repeat Simple_repeat 1 20 0 2 891 362 284 23 0 chr12 40218612 40218700 -81038830 + B3A SINE B2 67 156 -42 2 891 351 0 0 0 chr12 40218705 40218744 -81038786 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 891 192 200 0 0 chr12 40218751 40218791 -81038739 + GA-rich Low_complexity Low_complexity 1 40 0 2 891 198 0 0 0 chr12 40218888 40218910 -81038620 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2 891 1019 196 16 0 chr12 40222392 40222581 -81034949 - URR1A DNA MER1_type -3 223 32 2 891 21 0 0 0 chr12 40222972 40222993 -81034537 + AT_rich Low_complexity Low_complexity 1 21 0 2 891 305 330 98 0 chr12 40223183 40223377 -81034153 + L1MD2 LINE L1 4960 5172 -974 2 891 3455 128 5 10 chr12 40223377 40223967 -81033563 + Lx4B LINE L1 4730 5316 -561 2 891 1332 72 72 0 chr12 40223975 40224168 -81033362 - L1_Mus2 LINE L1 -772 5794 5588 2 891 24027 73 10 3 chr12 40224184 40228509 -81029021 + L1Md_F LINE L1 388 4745 -1138 2 891 4331 124 23 34 chr12 40228509 40229654 -81027876 + L1Md_F2 LINE L1 413 1542 -4341 2 891 3452 74 31 8 chr12 40229652 40230142 -81027388 - L1Md_F2 LINE L1 -33 6549 6049 2 891 4550 48 0 0 chr12 40230142 40230726 -81026804 + L1Md_F2 LINE L1 5003 5586 -297 2 891 8028 38 14 10 chr12 40230726 40231705 -81025825 + L1Md_F2 LINE L1 5587 6569 -13 2 891 2457 113 47 2 chr12 40231715 40232123 -81025407 + L1_Mus3 LINE L1 6211 6636 -2 3 891 7536 165 36 10 chr12 40232129 40233691 -81023839 + Lx4B LINE L1 5441 7054 -4 2 891 492 40 0 62 chr12 40233849 40233929 -81023601 + L1_Mus1 LINE L1 6493 6567 0 3 891 608 216 46 46 chr12 40233971 40234189 -81023341 + Lx8 LINE L1 7256 7473 0 3 891 243 264 131 9 chr12 40234207 40234421 -81023109 + L1MD2 LINE L1 5296 5535 -824 2 891 332 242 148 28 chr12 40234450 40234577 -81022953 - MTD LTR MaLR -26 393 259 3 891 266 284 34 11 chr12 40234637 40234726 -81022804 - MTD LTR MaLR -255 166 76 3 891 1492 244 23 80 chr12 40234728 40235214 -81022316 + Lx7 LINE L1 6620 7077 -619 3 891 638 319 61 20 chr12 40235232 40235574 -81021956 + L1MD2 LINE L1 5991 6346 -13 2 891 408 40 0 0 chr12 40236381 40236431 -81021099 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 3 891 227 38 56 37 chr12 40236515 40236569 -81020961 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 3 891 234 91 0 0 chr12 40238750 40238783 -81018747 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 111 4828 74 3 1 chr12 40238989 40239656 -81017874 - L1_Mus2 LINE L1 -181 6385 5718 3 892 255 161 0 0 chr12 40240143 40240199 -81017331 + T-rich Low_complexity Low_complexity 1 56 0 3 892 602 330 67 16 chr12 40240200 40240394 -81017136 + MTE2a LTR MaLR 3 206 -173 3 892 517 301 124 43 chr12 40240401 40240821 -81016709 - L1M2 LINE L1 -914 5229 4776 3 892 275 357 23 16 chr12 40241001 40241129 -81016401 + Lx8 LINE L1 7196 7324 -149 3 892 408 40 0 0 chr12 40241131 40241181 -81016349 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 892 268 307 0 0 chr12 40242141 40242216 -81015314 - RLTR24 LTR ERV1 -454 75 1 3 892 1675 157 109 9 chr12 40242596 40242918 -81014612 + ORR1B1 LTR MaLR 41 394 0 3 892 1405 223 81 17 chr12 40242928 40243559 -81013971 + Lx7 LINE L1 1009 1697 -4183 3 892 1340 117 178 100 chr12 40243559 40243890 -81013640 + RMER6C LTR ERVK 2 358 -332 3 892 2106 179 175 5 chr12 40243907 40244548 -81012982 + Lx7 LINE L1 3609 4358 -1522 3 892 6150 197 184 49 chr12 40244558 40244735 -81012795 + Lx7 LINE L1 5536 5720 -1976 3 892 345 100 0 0 chr12 40244735 40244785 -81012745 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 3 892 6150 237 88 23 chr12 40244785 40246343 -81011187 + Lx7 LINE L1 5721 7353 -343 3 892 246 62 0 0 chr12 40246343 40246375 -81011155 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 892 6150 237 88 23 chr12 40246375 40246613 -81010917 + Lx7 LINE L1 7354 7646 -50 3 892 28 0 0 0 chr12 40246660 40246688 -81010842 + AT_rich Low_complexity Low_complexity 1 28 0 3 892 258 162 46 28 chr12 40246688 40246796 -81010734 + (CATATA)n Simple_repeat Simple_repeat 5 114 0 3 892 28 0 0 0 chr12 40246922 40246950 -81010580 + AT_rich Low_complexity Low_complexity 1 28 0 3 892 1279 170 110 43 chr12 40249294 40249576 -81007954 + RLTR41 LTR ERV1 146 446 0 3 892 202 295 0 16 chr12 40250107 40250169 -81007361 + GA-rich Low_complexity Low_complexity 3 63 0 3 892 476 284 94 30 chr12 40250976 40251179 -81006351 - B3 SINE B2 0 216 1 3 892 27 29 0 0 chr12 40251204 40251238 -81006292 + AT_rich Low_complexity Low_complexity 1 34 0 3 892 2450 279 129 16 chr12 40251405 40252166 -81005364 - RMER13A LTR ERVK 0 860 14 3 892 29 47 0 0 chr12 40252189 40252232 -81005298 + AT_rich Low_complexity Low_complexity 1 43 0 3 892 207 0 0 0 chr12 40254452 40254475 -81003055 + (A)n Simple_repeat Simple_repeat 1 23 0 3 892 466 268 0 63 chr12 40254929 40255120 -81002410 + G-rich Low_complexity Low_complexity 1 179 0 3 892 234 215 54 0 chr12 40255552 40255645 -81001885 + (TA)n Simple_repeat Simple_repeat 1 98 0 3 892 581 256 40 103 chr12 40255682 40255856 -81001674 + RSINE1 SINE B4 3 165 0 3 892 808 220 274 43 chr12 40256291 40256631 -81000899 + MTD LTR MaLR 1 419 0 3 892 234 0 0 0 chr12 40256728 40256754 -81000776 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 3 892 405 0 0 0 chr12 40256759 40256804 -81000726 + (GTGTG)n Simple_repeat Simple_repeat 1 45 0 3 892 599 273 26 32 chr12 40257872 40258061 -80999469 + B3A SINE B2 2 189 -9 3 892 240 35 0 0 chr12 40258566 40258595 -80998935 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 3 892 3990 244 15 18 chr12 40258595 40259540 -80997990 - Lx5 LINE L1 -14 7036 6094 3 892 677 253 157 0 chr12 40260479 40260657 -80996873 + B3 SINE B2 1 206 -10 3 892 776 98 130 30 chr12 40261097 40261266 -80996264 - L1_Mus3 LINE L1 -1 6637 6452 3 892 29 0 0 0 chr12 40261937 40261966 -80995564 + AT_rich Low_complexity Low_complexity 1 29 0 3 892 2131 206 56 55 chr12 40263457 40264628 -80992902 + Lx7 LINE L1 547 1719 -4161 3 892 294 29 0 0 chr12 40264628 40264663 -80992867 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 892 1867 187 74 28 chr12 40264663 40264720 -80992810 + Lx7 LINE L1 1720 1765 -4115 3 892 2746 194 9 0 chr12 40264722 40265253 -80992277 - Lx4B LINE L1 -595 6463 5928 3 892 25 0 0 0 chr12 40265292 40265317 -80992213 + AT_rich Low_complexity Low_complexity 1 25 0 3 892 34808 15 14 19 chr12 40265344 40270057 -80987473 + L1Md_A LINE L1 188 4927 -956 3 892 249 150 46 77 chr12 40270057 40270122 -80987408 - RMER20A LTR ERVK -268 248 186 3 892 34808 15 14 19 chr12 40270122 40270776 -80986754 + L1Md_A LINE L1 4928 5586 -297 3 892 8817 15 0 0 chr12 40270776 40271771 -80985759 + L1Md_A LINE L1 5587 6581 -1 3 892 4484 171 59 4 chr12 40271800 40272073 -80985457 + Lx7 LINE L1 1781 2057 -3823 3 892 234 0 0 0 chr12 40272073 40272099 -80985431 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 892 4484 171 59 4 chr12 40272099 40272803 -80984727 + Lx7 LINE L1 2058 2811 -3069 3 892 6377 194 79 10 chr12 40272794 40274029 -80983501 + Lx7 LINE L1 4220 5568 -312 3 892 2340 83 60 27 chr12 40274029 40274364 -80983166 - ORR1A1 LTR MaLR 0 346 1 3 892 11325 70 112 7 chr12 40274365 40275987 -80981543 - ORR1A1-int LTR MaLR -1 1791 1 3 892 2676 40 61 0 chr12 40275987 40276313 -80981217 - ORR1A1 LTR MaLR 0 346 1 3 892 6377 211 57 8 chr12 40276313 40276938 -80980592 + Lx7 LINE L1 5569 6208 -1488 3 892 1269 213 11 11 chr12 40277504 40277765 -80979765 + Lx7 LINE L1 6207 6467 -993 3 892 958 64 0 0 chr12 40277793 40277918 -80979612 + B1_Mm SINE Alu 21 145 -2 3 892 215 31 31 0 chr12 40277922 40277954 -80979576 + (CAA)n Simple_repeat Simple_repeat 2 34 0 3 892 2741 152 65 24 chr12 40277965 40278499 -80979031 + L1_Mus1 LINE L1 409 964 -5652 3 892 22539 131 14 16 chr12 40278486 40283280 -80974250 + L1_Mus1 LINE L1 2553 7336 -360 3 892 341 265 12 12 chr12 40283402 40283486 -80974044 + L1M3a LINE L1 98 181 -5774 3 892 3114 63 2 8 chr12 40283486 40283884 -80973646 + MTA_Mm LTR MaLR 1 396 0 3 892 246 352 84 24 chr12 40284156 40284322 -80973208 + L1M3a LINE L1 776 951 -5004 3 892 1339 192 111 20 chr12 40284382 40284733 -80972797 - Lx9 LINE L1 -1 7643 7261 3 892 337 291 78 65 chr12 40284734 40285105 -80972425 + L1M3a LINE L1 978 1353 -4602 3 892 942 109 66 0 chr12 40285163 40285300 -80972230 + B1_Mm SINE Alu 2 147 0 3 892 261 83 0 0 chr12 40285300 40285336 -80972194 + (A)n Simple_repeat Simple_repeat 1 36 0 3 892 236 234 167 26 chr12 40285613 40285727 -80971803 + L1MEg LINE L1 1377 1506 -4578 3 892 2234 57 3 0 chr12 40286207 40286490 -80971040 - L1_Mus2 LINE L1 -528 6038 5755 3 892 1406 70 0 57 chr12 40286490 40286702 -80970828 + L1_Mus2 LINE L1 6367 6566 0 3 892 253 316 13 0 chr12 40287015 40287091 -80970439 + GA-rich Low_complexity Low_complexity 2 78 0 3 892 2769 166 53 42 chr12 40287169 40287735 -80969795 - Lx5 LINE L1 0 7050 6479 3 892 405 346 93 69 chr12 40289269 40289794 -80967736 - L1M5 LINE L1 -1168 4978 4441 3 892 188 135 27 0 chr12 40290336 40290373 -80967157 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 892 28897 75 90 9 chr12 40292127 40296842 -80960688 + L1Md_F2 LINE L1 498 5589 -294 3 892 7777 56 7 4 chr12 40296842 40297835 -80959695 + L1Md_F2 LINE L1 5587 6582 0 3 892 214 339 45 18 chr12 40298050 40298161 -80959369 + MIR SINE MIR 40 153 -109 3 892 693 348 112 5 chr12 40298178 40298545 -80958985 + MTD LTR MaLR 1 406 -13 3 892 30 45 0 0 chr12 40298739 40298783 -80958747 + AT_rich Low_complexity Low_complexity 1 44 0 3 892 428 240 169 44 chr12 40298837 40299020 -80958510 + B3 SINE B2 2 207 -9 3 892 437 133 0 0 chr12 40299469 40299544 -80957986 - L1Md_F2 LINE L1 -12 6570 6496 3 892 14992 63 9 1 chr12 40300301 40302250 -80955280 + L1Md_F2 LINE L1 3621 5585 -298 3 892 7604 60 9 4 chr12 40302251 40303229 -80954301 + L1Md_F2 LINE L1 5587 6569 -13 3 892 255 61 0 0 chr12 40303229 40303262 -80954268 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 892 681 13 0 0 chr12 40303273 40303351 -80954179 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 3 892 794 246 69 25 chr12 40303410 40303614 -80953916 - B3A SINE B2 -3 213 1 3 892 342 88 44 0 chr12 40304693 40304761 -80952769 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 892 463 253 47 0 chr12 40304935 40305076 -80952454 - Lx7 LINE L1 0 7696 7554 3 892 315 0 0 0 chr12 40305076 40305111 -80952419 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 892 463 253 47 0 chr12 40305111 40305139 -80952391 - Lx7 LINE L1 -143 7553 7521 3 892 2597 169 49 33 chr12 40305146 40305695 -80951835 + Lx7 LINE L1 6817 7374 -322 3 892 214 163 20 39 chr12 40306045 40306096 -80951434 + (TCTTG)n Simple_repeat Simple_repeat 5 54 0 3 892 342 221 71 26 chr12 40306108 40306208 -80951322 - B1F SINE Alu -2 147 21 3 892 4795 211 31 11 chr12 40308059 40309012 -80948518 - Lx5 LINE L1 -157 6893 5922 3 892 581 148 0 0 chr12 40309014 40309115 -80948415 + Lx5 LINE L1 5856 5956 -1094 3 892 299 160 121 138 chr12 40309486 40309602 -80947928 + L1_Mur1 LINE L1 4971 5084 -802 3 892 841 221 55 55 chr12 40309590 40309751 -80947779 + Lx4B LINE L1 6784 6944 -114 3 892 198 0 0 0 chr12 40309751 40309773 -80947757 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 892 600 53 0 0 chr12 40309773 40309848 -80947682 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 892 841 221 55 55 chr12 40309848 40309920 -80947610 + Lx4B LINE L1 6945 7017 -41 3 892 387 0 0 0 chr12 40309930 40309973 -80947557 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 3 892 6758 46 0 1 chr12 40310267 40311098 -80946432 + L1Md_F3 LINE L1 4757 5586 -297 3 892 8175 37 4 5 chr12 40311098 40312097 -80945433 + L1Md_F3 LINE L1 5587 6584 0 3 892 456 275 11 91 chr12 40313232 40313408 -80944122 + RSINE1 SINE B4 4 165 0 3 892 201 147 0 0 chr12 40313425 40313459 -80944071 + (TAA)n Simple_repeat Simple_repeat 3 36 0 3 892 204 188 20 20 chr12 40314126 40314175 -80943355 + T-rich Low_complexity Low_complexity 1 49 0 3 892 342 0 0 0 chr12 40314177 40314215 -80943315 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 892 182 253 226 12 chr12 40314623 40314707 -80942823 - MIR SINE MIR -115 147 46 3 892 618 47 0 0 chr12 40315411 40315496 -80942034 + L1_Mus2 LINE L1 6481 6565 -1 3 892 24 77 0 0 chr12 40315611 40315663 -80941867 + AT_rich Low_complexity Low_complexity 1 52 0 3 892 248 315 184 27 chr12 40315833 40315980 -80941550 + MIR SINE MIR 38 207 -55 3 892 2625 160 36 41 chr12 40316750 40317283 -80940247 + Lx2 LINE L1 6468 6997 0 3 892 2886 314 62 46 chr12 40318200 40320096 -80937434 - Lx9 LINE L1 0 7644 5590 3 892 1810 114 100 0 chr12 40320099 40320389 -80937141 - ORR1A2 LTR MaLR -8 319 1 3 892 451 142 20 13 chr12 40320418 40320568 -80936962 + T-rich Low_complexity Low_complexity 4 154 0 4 892 432 255 7 22 chr12 40320574 40320719 -80936811 - Lx9 LINE L1 -692 5611 5409 3 892 1155 71 0 0 chr12 40322283 40322424 -80935106 - B1_Mus1 SINE Alu -6 142 2 4 892 528 45 0 0 chr12 40322430 40322497 -80935033 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 4 892 23 0 0 0 chr12 40323601 40323624 -80933906 + AT_rich Low_complexity Low_complexity 1 23 0 4 892 298 302 45 23 chr12 40323843 40323975 -80933555 - MER67C LTR ERV1 -404 307 173 4 892 3246 250 83 70 chr12 40324182 40325737 -80931793 - Lx5 LINE L1 -4 7046 5475 4 892 284 262 103 65 chr12 40325765 40325920 -80931610 - Lx8 LINE L1 -30 7443 7283 4 892 308 317 47 47 chr12 40327181 40327310 -80930220 + B4 SINE B4 76 204 -88 4 892 608 221 49 42 chr12 40327197 40327339 -80930191 + B1_Mus2 SINE Alu 5 147 0 4 892 257 267 0 0 chr12 40327509 40327569 -80929961 + GA-rich Low_complexity Low_complexity 4 63 0 4 892 661 239 107 14 chr12 40327663 40327679 -80929851 + Lx9 LINE L1 7295 7310 -334 4 892 441 95 0 0 chr12 40327679 40327742 -80929788 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 892 661 239 107 14 chr12 40327742 40328005 -80929525 + Lx9 LINE L1 7311 7600 -44 4 892 532 204 147 30 chr12 40328326 40328509 -80929021 + RLTR25A LTR ERVK 839 1103 0 4 892 21 57 0 0 chr12 40328953 40328988 -80928542 + AT_rich Low_complexity Low_complexity 1 35 0 4 892 277 295 158 48 chr12 40329773 40329901 -80927629 + MLT1I LTR MaLR 2 147 -264 4 892 3778 120 41 14 chr12 40329901 40330484 -80927046 - MT2B LTR ERVL -2 599 1 4 892 277 295 158 48 chr12 40330484 40330501 -80927029 + MLT1I LTR MaLR 148 163 -248 4 892 227 245 57 0 chr12 40332215 40332268 -80925262 - ID4_ SINE ID -27 56 1 4 892 374 240 31 0 chr12 40332295 40332391 -80925139 - B1F1 SINE Alu -44 105 7 4 892 277 348 35 9 chr12 40332391 40332408 -80925122 - ID_B1 SINE B4 -41 183 68 4 892 283 311 44 7 chr12 40332433 40332569 -80924961 + CT-rich Low_complexity Low_complexity 3 143 0 4 892 2788 65 47 8 chr12 40332757 40333142 -80924388 + MTB LTR MaLR 1 400 0 4 892 738 290 0 6 chr12 40334196 40334366 -80923164 + B3A SINE B2 1 169 -29 4 892 361 0 20 20 chr12 40334374 40334424 -80923106 + (TAA)n Simple_repeat Simple_repeat 3 52 0 4 892 7581 143 80 16 chr12 40334424 40336519 -80921011 - Lx4B LINE L1 -120 6938 4659 4 892 185 0 40 0 chr12 40336519 40336544 -80920986 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 892 6584 142 92 23 chr12 40336544 40336686 -80920844 - Lx4B LINE L1 -1219 4658 4535 4 892 281 365 71 48 chr12 40336829 40337097 -80920433 + B4A SINE B4 1 274 -18 4 892 1612 211 49 30 chr12 40337305 40337672 -80919858 - ORR1D1 LTR MaLR 0 374 1 4 892 3576 29 0 2 chr12 40338467 40338889 -80918641 - L1Md_F2 LINE L1 -12 6570 6150 4 892 3496 31 0 2 chr12 40338889 40339310 -80918220 + L1Md_F2 LINE L1 5727 6146 -438 4 892 477 0 0 0 chr12 40339573 40339626 -80917904 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 4 892 307 127 0 31 chr12 40340023 40340088 -80917442 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 892 826 311 25 18 chr12 40340137 40340415 -80917115 - B4A SINE B4 -12 280 1 4 892 21 0 0 0 chr12 40340418 40340439 -80917091 + AT_rich Low_complexity Low_complexity 1 21 0 4 892 21 82 0 0 chr12 40340938 40340987 -80916543 + AT_rich Low_complexity Low_complexity 1 49 0 4 892 1534 169 88 3 chr12 40343514 40343799 -80913731 - RLTR27 LTR ERVK 0 309 1 4 892 4483 208 67 11 chr12 40343843 40345745 -80911785 + L1_Mur3 LINE L1 335 2335 -3545 4 892 3399 173 68 3 chr12 40345733 40346450 -80911080 + L1_Mur3 LINE L1 3476 4239 -1641 4 892 7348 77 6 25 chr12 40346492 40347676 -80909854 + L1_Mus1 LINE L1 5388 6565 -2 4 892 387 0 0 0 chr12 40347679 40347722 -80909808 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 892 1131 194 60 12 chr12 40347734 40347985 -80909545 + L1_Mur3 LINE L1 4314 4576 -1304 4 892 1121 272 44 58 chr12 40348565 40349267 -80908263 + RMER1A Other Other 21 448 -618 4 892 13722 61 4 6 chr12 40349296 40351879 -80905651 + L1Md_Gf LINE L1 340 3014 -2872 4 892 4600 25 9 0 chr12 40351865 40352411 -80905119 + L1Md_Gf LINE L1 5039 5589 -297 4 892 8045 48 2 2 chr12 40352411 40353405 -80904125 + L1Md_F2 LINE L1 5587 6580 -2 4 892 462 274 18 8 chr12 40353410 40353537 -80903993 + RMER1B Other Other 365 468 -598 4 892 396 0 0 0 chr12 40353732 40353776 -80903754 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 4 892 516 16 0 0 chr12 40354351 40354412 -80903118 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 4 892 2129 277 100 67 chr12 40354586 40355438 -80902092 + RMER1A Other Other 147 1026 -4 4 892 2170 162 26 12 chr12 40355458 40356055 -80901475 - RMER13B LTR ERVK -274 634 3 4 892 213 108 0 0 chr12 40356129 40356166 -80901364 + (GGTTG)n Simple_repeat Simple_repeat 2 38 0 4 892 249 89 24 60 chr12 40356164 40356248 -80901282 + T-rich Low_complexity Low_complexity 3 83 0 4 892 2966 210 8 32 chr12 40356300 40356900 -80900630 - RMER20B LTR ERVK -41 586 1 4 892 719 201 48 20 chr12 40356900 40357082 -80900448 + Lx7 LINE L1 7527 7696 0 4 892 272 355 95 50 chr12 40358671 40358893 -80898637 + MIR SINE MIR 30 261 -1 4 892 339 307 29 91 chr12 40359002 40359210 -80898320 + Lx8 LINE L1 7233 7427 -46 4 892 264 59 0 0 chr12 40359507 40359541 -80897989 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 892 252 0 0 0 chr12 40360352 40360380 -80897150 + (A)n Simple_repeat Simple_repeat 1 28 0 4 892 225 280 146 7 chr12 40360542 40360720 -80896810 - MIR3 SINE MIR -20 248 41 4 892 23 0 0 0 chr12 40361329 40361352 -80896178 + AT_rich Low_complexity Low_complexity 1 23 0 4 892 3531 20 0 0 chr12 40362041 40362437 -80895093 - MTA_Mm LTR MaLR 0 396 1 4 892 2406 217 131 14 chr12 40362656 40363665 -80893865 + Lx9 LINE L1 6518 7644 0 4 892 210 111 44 0 chr12 40364518 40364563 -80892967 + T-rich Low_complexity Low_complexity 2 48 0 4 892 5214 54 1 1 chr12 40364567 40365219 -80892311 - L1_Mus1 LINE L1 0 6567 5916 4 892 2012 145 82 14 chr12 40365419 40365853 -80891677 + RLTR33 LTR ERVK 1 530 -148 4 892 1486 232 83 40 chr12 40365862 40366257 -80891273 + Lx5 LINE L1 6639 7050 0 4 892 719 154 7 0 chr12 40366270 40366406 -80891124 + GA-rich Low_complexity Low_complexity 4 140 0 4 892 256 261 126 30 chr12 40367028 40367154 -80890376 - PB1D7 SINE Alu 0 149 5 4 892 602 295 129 83 chr12 40367685 40368033 -80889497 + MER77 LTR ERVL 196 559 -48 4 111 7935 105 5 1 chr12 40368471 40370431 -80887099 - L1_Mus3 LINE L1 -2 6636 4668 4 893 9554 110 46 6 chr12 40370432 40372421 -80885109 - L1VL4 LINE L1 -1139 2420 148 4 893 273 119 0 0 chr12 40373842 40373884 -80883646 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 893 7253 187 57 30 chr12 40373896 40374434 -80883096 - L1_Mur3 LINE L1 -56 5824 5257 4 893 180 0 0 0 chr12 40374434 40374454 -80883076 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 893 7253 187 57 30 chr12 40374454 40375061 -80882469 - L1_Mur3 LINE L1 -624 5256 4633 4 893 402 21 0 0 chr12 40375061 40375108 -80882422 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 893 7253 187 57 30 chr12 40375108 40375671 -80881859 - L1_Mur3 LINE L1 -1248 4632 4071 4 893 356 59 0 19 chr12 40376094 40376146 -80881384 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 893 325 325 25 25 chr12 40376231 40376433 -80881097 - L1M4 LINE L1 -628 5536 5335 4 893 320 320 27 0 chr12 40376704 40376851 -80880679 - L1M4 LINE L1 -1101 5045 4895 4 893 387 0 0 0 chr12 40376964 40377007 -80880523 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 893 332 143 14 0 chr12 40377007 40377077 -80880453 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 893 543 301 113 26 chr12 40377090 40377356 -80880174 - B4A SINE B4 -3 289 1 4 893 302 296 47 20 chr12 40377392 40377540 -80879990 - L1MC LINE L1 -1421 4725 4574 4 893 22 0 0 0 chr12 40377699 40377721 -80879809 + AT_rich Low_complexity Low_complexity 1 22 0 4 893 606 367 9 4 chr12 40377862 40378092 -80879438 - Tigger5 DNA MER2_type -2164 242 12 4 893 425 261 80 0 chr12 40378100 40378276 -80879254 - Tigger7 DNA MER2_type -79 2412 2223 4 893 846 314 77 15 chr12 40378409 40378668 -80878862 - B4A SINE B4 -10 282 8 4 893 21 0 0 0 chr12 40378747 40378768 -80878762 + AT_rich Low_complexity Low_complexity 1 21 0 4 893 426 210 344 0 chr12 40378768 40378925 -80878605 - B3 SINE B2 -4 212 2 4 893 2053 218 56 0 chr12 40379608 40380057 -80877473 + Lx9 LINE L1 6923 7396 -248 4 893 2160 166 32 0 chr12 40380492 40380866 -80876664 - ORR1B1 LTR MaLR -8 386 1 4 893 23 0 0 0 chr12 40380869 40380892 -80876638 + AT_rich Low_complexity Low_complexity 1 23 0 4 893 615 81 31 31 chr12 40381108 40381235 -80876295 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 4 893 195 42 0 0 chr12 40381239 40381263 -80876267 + (CATA)n Simple_repeat Simple_repeat 1 24 0 4 893 232 325 0 13 chr12 40381770 40381848 -80875682 + GA-rich Low_complexity Low_complexity 3 79 0 4 893 262 294 139 72 chr12 40381911 40382120 -80875410 + MLT1C LTR MaLR 6 228 -239 4 893 227 287 111 108 chr12 40382217 40382541 -80874989 + MER65D LTR ERV1 125 449 -24 4 893 387 265 28 47 chr12 40382583 40382690 -80874840 - ORR1E LTR MaLR -248 111 7 4 893 355 282 0 12 chr12 40382685 40382771 -80874759 - ORR1D-int LTR MaLR -42 1538 1454 4 893 1305 157 39 9 chr12 40382771 40383003 -80874527 + RLTR42 LTR ERVK 1 239 0 4 893 816 11 0 0 chr12 40383127 40383220 -80874310 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 893 1169 245 78 22 chr12 40383237 40383558 -80873972 + RLTR42-int LTR ERVK 215 553 -4969 4 893 1434 225 11 80 chr12 40384088 40384465 -80873065 + RLTR42-int LTR ERVK 682 1032 -4490 4 893 1604 172 25 4 chr12 40384466 40384746 -80872784 + ORR1C1 LTR MaLR 93 378 0 4 893 2842 152 10 24 chr12 40384746 40385257 -80872273 + RLTR42-int LTR ERVK 1029 1532 -3990 4 893 1053 207 5 10 chr12 40385361 40385561 -80871969 + RLTR42-int LTR ERVK 1689 1887 -3635 4 893 8973 167 88 9 chr12 40385636 40386183 -80871347 + RLTR42-int LTR ERVK 3147 3733 -1789 4 893 411 21 0 0 chr12 40386183 40386231 -80871299 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 893 8973 167 88 9 chr12 40386231 40386416 -80871114 + RLTR42-int LTR ERVK 3734 3951 -1571 4 893 1949 171 8 60 chr12 40386416 40386802 -80870728 + ORR1B2 LTR MaLR 2 367 0 4 893 8973 167 88 9 chr12 40386802 40387862 -80869668 + RLTR42-int LTR ERVK 3952 5079 -443 4 893 335 180 247 0 chr12 40387856 40387945 -80869585 + RLTR42-int LTR ERVK 4092 4202 -1320 4 893 2720 124 7 2 chr12 40387945 40388364 -80869166 + L1_Mus3 LINE L1 6216 6636 -2 4 893 4666 116 16 11 chr12 40388502 40389236 -80868294 - Lx3A LINE L1 -9 6972 6235 4 893 2092 142 43 91 chr12 40389973 40390414 -80867116 + RLTR42-int LTR ERVK 5091 5510 -12 4 893 1158 187 73 0 chr12 40390415 40390634 -80866896 + RLTR42 LTR ERVK 5 239 0 4 893 1754 225 82 39 chr12 40390634 40390936 -80866594 - ORR1D-int LTR MaLR -67 1303 986 4 893 345 47 0 0 chr12 40390936 40390979 -80866551 + (CATA)n Simple_repeat Simple_repeat 1 43 0 5 893 1754 225 82 39 chr12 40390979 40391116 -80866414 - ORR1D-int LTR MaLR -385 985 844 4 893 2271 105 3 3 chr12 40393138 40393471 -80864059 - L1_Mus4 LINE L1 -3 6633 6301 5 893 285 292 120 81 chr12 40394581 40394864 -80862666 - L2 LINE L2 -782 2637 2344 5 893 626 294 65 0 chr12 40394885 40395038 -80862492 + RSINE1 SINE B4 2 164 -1 5 893 269 301 74 66 chr12 40395357 40395599 -80861931 + L2a LINE L2 3183 3426 0 5 893 228 277 71 12 chr12 40396402 40396486 -80861044 + L1M3 LINE L1 3753 3841 -2299 5 893 25 75 0 0 chr12 40396917 40396970 -80860560 + AT_rich Low_complexity Low_complexity 1 53 0 5 893 432 290 58 31 chr12 40397142 40397366 -80860164 + L1M3 LINE L1 4066 4295 -1845 5 893 1048 279 35 83 chr12 40397432 40397747 -80859783 - MER57D LTR ERV1 0 411 116 5 893 1105 270 70 28 chr12 40397747 40398102 -80859428 + ORR1D2 LTR MaLR 1 370 0 5 893 1048 279 35 83 chr12 40398102 40398208 -80859322 - MER57D LTR ERV1 -296 115 10 5 893 372 252 36 22 chr12 40398247 40398385 -80859145 + L1M3 LINE L1 4418 4557 -1583 5 893 617 306 36 104 chr12 40398389 40398754 -80858776 - ORR1E LTR MaLR -10 349 10 5 893 1041 261 102 29 chr12 40398768 40399328 -80858202 + L1M3 LINE L1 4576 5176 -964 5 893 1155 94 11 11 chr12 40399615 40399798 -80857732 - L1_Mus3 LINE L1 -3 6635 6453 5 893 730 249 266 3 chr12 40401214 40401546 -80855984 - MTD LTR MaLR 0 419 1 5 893 253 329 144 35 chr12 40404683 40404856 -80852674 - MIRb SINE MIR -23 245 54 5 893 1123 299 52 17 chr12 40405901 40406323 -80851207 - MLT1C LTR MaLR -9 458 22 5 893 21 0 0 0 chr12 40406412 40406433 -80851097 + AT_rich Low_complexity Low_complexity 1 21 0 5 893 724 205 0 8 chr12 40406826 40406949 -80850581 - B1_Mur2 SINE Alu -21 128 7 5 893 184 342 50 83 chr12 40407446 40407567 -80849963 - MER5B DNA MER1_type -60 118 2 5 893 22 56 0 0 chr12 40409561 40409597 -80847933 + AT_rich Low_complexity Low_complexity 1 36 0 5 893 571 347 190 5 chr12 40410635 40411009 -80846521 - MER45C DNA Tip100 -4 949 507 5 893 306 194 0 0 chr12 40411339 40411401 -80846129 + GA-rich Low_complexity Low_complexity 4 65 0 5 893 265 296 5 34 chr12 40411413 40411563 -80845967 + GA-rich Low_complexity Low_complexity 1 145 0 5 893 188 149 0 21 chr12 40412384 40412432 -80845098 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 893 252 0 0 0 chr12 40412459 40412487 -80845043 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 893 896 282 50 58 chr12 40414420 40414797 -80842733 + MER89 LTR ERV1 172 545 -14 5 893 225 179 51 0 chr12 40415485 40415524 -80842006 - Charlie1 DNA MER1_type -1639 1142 1102 5 893 543 31 0 0 chr12 40415651 40415716 -80841814 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 893 566 270 14 42 chr12 40415717 40415860 -80841670 - RSINE1 SINE B4 -25 140 2 5 893 360 0 0 0 chr12 40416528 40416568 -80840962 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 893 274 233 83 0 chr12 40416574 40416633 -80840897 - RSINE1 SINE B4 -17 148 85 5 893 387 255 18 10 chr12 40416633 40416732 -80840798 + B1_Mus1 SINE Alu 1 101 -16 5 893 1911 177 60 3 chr12 40417165 40417516 -80840014 + RMER19B LTR ERVK 520 890 -12 5 893 423 0 0 0 chr12 40417569 40417616 -80839914 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 5 893 1399 269 83 50 chr12 40419567 40419631 -80837899 - MT2A LTR ERVL 0 533 471 5 893 2613 73 34 6 chr12 40419631 40419989 -80837541 + L1Md_F2 LINE L1 6197 6564 -18 5 893 1399 269 83 50 chr12 40419989 40420440 -80837090 - MT2A LTR ERVL -63 470 1 5 893 23 0 0 0 chr12 40420746 40420769 -80836761 + AT_rich Low_complexity Low_complexity 1 23 0 5 893 790 360 35 14 chr12 40421090 40421372 -80836158 + B4A SINE B4 5 292 0 5 893 392 367 105 17 chr12 40421387 40421681 -80835849 + L1MEg LINE L1 914 1233 -4851 5 893 256 226 146 29 chr12 40421748 40421885 -80835645 + L1MEg LINE L1 1250 1402 -4682 5 893 829 277 14 5 chr12 40422192 40422399 -80835131 + B3 SINE B2 1 209 -7 5 893 679 140 132 7 chr12 40422483 40422634 -80834896 + Lx2 LINE L1 6828 6997 0 5 893 26 50 0 0 chr12 40422845 40422885 -80834645 + AT_rich Low_complexity Low_complexity 1 40 0 5 893 678 25 0 0 chr12 40423064 40423144 -80834386 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 893 198 0 0 0 chr12 40423144 40423165 -80834365 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 893 691 237 59 14 chr12 40424436 40424658 -80832872 + L1_Mur3 LINE L1 319 550 -7162 5 893 1900 175 30 18 chr12 40424670 40425066 -80832464 - L1_Mur3 LINE L1 -1663 4217 3817 5 893 1407 219 40 116 chr12 40425048 40425364 -80832166 + Lx7 LINE L1 7257 7538 -158 5 893 729 43 0 0 chr12 40425364 40425457 -80832073 + (TATAG)n Simple_repeat Simple_repeat 3 95 0 5 893 1407 219 40 116 chr12 40425457 40425616 -80831914 + Lx7 LINE L1 7539 7695 -1 5 893 1541 159 132 11 chr12 40427788 40428144 -80829386 + MTD LTR MaLR 10 408 -11 5 893 280 347 20 10 chr12 40428600 40428699 -80828831 - RSINE1 SINE B4 -63 102 3 5 893 4430 119 21 9 chr12 40428811 40429490 -80828040 + Lx LINE L1 5965 6651 -3 5 893 3192 239 122 58 chr12 40429682 40429794 -80827736 - RMER1A Other Other -5 1025 897 5 893 321 89 0 0 chr12 40429794 40429839 -80827691 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 893 3192 239 122 58 chr12 40429839 40430689 -80826841 - RMER1A Other Other -134 896 2 5 893 1473 229 88 6 chr12 40430661 40431004 -80826526 - RMER1B Other Other -651 415 45 5 893 1664 233 116 50 chr12 40431202 40431472 -80826058 + RLTR20C LTR ERVK 1 260 -274 5 893 5085 42 0 0 chr12 40431472 40432085 -80825445 + L1Md_F2 LINE L1 5970 6582 0 5 893 1664 233 116 50 chr12 40432085 40432244 -80825286 + RLTR20C LTR ERVK 261 458 -76 5 893 396 0 0 0 chr12 40432244 40432288 -80825242 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 893 1664 233 116 50 chr12 40432288 40432358 -80825172 + RLTR20C LTR ERVK 459 533 -1 5 893 3256 202 55 5 chr12 40432642 40433366 -80824164 - L1_Mur3 LINE L1 -5783 1287 529 5 893 278 327 82 0 chr12 40433828 40433938 -80823592 - RSINE1 SINE B4 -45 120 2 5 893 540 304 30 0 chr12 40433978 40434113 -80823417 + RSINE1 SINE B4 2 140 -25 5 893 210 91 0 0 chr12 40434132 40434165 -80823365 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 893 450 0 0 0 chr12 40434166 40434216 -80823314 + (TAA)n Simple_repeat Simple_repeat 3 52 0 5 893 180 152 0 0 chr12 40434216 40434249 -80823281 + GA-rich Low_complexity Low_complexity 2 34 0 5 893 384 119 0 0 chr12 40435071 40435130 -80822400 + (GGA)n Simple_repeat Simple_repeat 3 61 0 5 893 752 59 0 10 chr12 40435132 40435235 -80822295 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 5 893 3764 154 71 25 chr12 40435960 40436681 -80820849 + RMER6A LTR ERVK 3 756 0 5 893 230 217 43 0 chr12 40437563 40437609 -80819921 - MLT2B5 LTR ERVL -667 50 3 5 893 417 161 0 0 chr12 40437901 40437988 -80819542 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 893 262 267 97 19 chr12 40438474 40438577 -80818953 - MER94 DNA AcHobo -16 118 8 5 893 771 128 50 8 chr12 40438799 40439069 -80818461 + (TAGA)n Simple_repeat Simple_repeat 1 281 0 5 893 495 342 34 0 chr12 40439496 40439642 -80817888 + RSINE1 SINE B4 8 158 -7 5 893 288 120 0 0 chr12 40439647 40439697 -80817833 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 893 911 182 179 11 chr12 40439866 40440124 -80817406 - Lx9 LINE L1 -52 7592 7291 5 893 2149 182 22 2 chr12 40440144 40440557 -80816973 + Lx9 LINE L1 6857 7277 -367 5 893 492 233 23 8 chr12 40440588 40440718 -80816812 - Lx7 LINE L1 0 7696 7565 5 893 583 244 46 66 chr12 40440730 40440927 -80816603 + Lx6 LINE L1 6190 6382 -668 5 893 1202 278 125 24 chr12 40440916 40441446 -80816084 + Lx6 LINE L1 6489 7434 -26 5 893 768 152 0 0 chr12 40442397 40442529 -80815001 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 893 639 243 19 11 chr12 40442655 40442823 -80814707 - B3A SINE B2 -13 203 34 5 893 2023 4 0 0 chr12 40444200 40444498 -80813032 - L1Md_T LINE L1 0 6582 6355 5 893 195 352 152 0 chr12 40444607 40444752 -80812778 + L2 LINE L2 2849 3015 -404 5 893 654 332 53 48 chr12 40444826 40445351 -80812179 - Lx8 LINE L1 0 7473 6946 5 893 466 339 58 6 chr12 40446442 40446614 -80810916 - MLT1C LTR MaLR -1 466 286 5 893 263 295 40 51 chr12 40447005 40447180 -80810350 + L1MD3 LINE L1 7066 7238 -644 5 893 6257 138 34 1 chr12 40447302 40448669 -80808861 - Lx LINE L1 0 6654 5244 5 893 657 0 0 0 chr12 40448669 40448742 -80808788 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 893 4244 158 12 1 chr12 40448742 40448864 -80808666 - Lx LINE L1 -640 5243 5115 5 893 350 282 202 30 chr12 40448891 40449391 -80808139 + L1MD3 LINE L1 7401 7986 -9 5 893 1220 285 90 21 chr12 40450310 40450697 -80806833 - MTD LTR MaLR 0 419 6 5 893 598 308 80 134 chr12 40451477 40452004 -80805526 - RMER20B LTR ERVK -51 576 30 5 893 1236 171 62 13 chr12 40452580 40452805 -80804725 + RLTR20D LTR ERVK 1 236 -332 5 893 405 0 0 0 chr12 40452805 40452850 -80804680 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 893 189 0 0 0 chr12 40452850 40452870 -80804660 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 893 333 314 87 40 chr12 40453289 40453415 -80804115 - B1F2 SINE Alu -1 148 17 5 893 227 326 128 64 chr12 40453415 40453430 -80804100 - B4A SINE B4 -62 230 81 5 893 1182 284 105 38 chr12 40453433 40453622 -80803908 - L1MB4 LINE L1 -6 6174 5948 5 893 384 22 0 0 chr12 40453622 40453667 -80803863 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 5 893 786 11 0 0 chr12 40453667 40453757 -80803773 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 893 1182 284 105 38 chr12 40453757 40454339 -80803191 - L1MB4 LINE L1 -233 5947 5351 5 893 821 166 14 7 chr12 40455617 40455757 -80801773 + B1_Mur2 SINE Alu 1 141 -8 5 893 335 312 72 57 chr12 40456014 40456276 -80801254 + MARNA DNA Mariner 265 530 -56 5 893 244 213 0 0 chr12 40456766 40456813 -80800717 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 893 717 306 15 25 chr12 40456879 40457080 -80800450 - B4A SINE B4 -93 199 1 5 893 379 266 0 37 chr12 40459236 40459318 -80798212 - RSINE1 SINE B4 -84 81 3 5 893 305 276 24 0 chr12 40459502 40459625 -80797905 + (TA)n Simple_repeat Simple_repeat 1 126 0 5 893 508 239 262 6 chr12 40459645 40459677 -80797853 - B3 SINE B2 -6 210 174 5 893 329 62 0 20 chr12 40459677 40459726 -80797804 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 893 508 239 262 6 chr12 40459726 40459857 -80797673 - B3 SINE B2 -43 173 6 5 893 21 36 0 0 chr12 40460035 40460063 -80797467 + AT_rich Low_complexity Low_complexity 1 28 0 6 893 470 57 14 0 chr12 40461503 40461573 -80795957 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 893 336 267 0 0 chr12 40461741 40461861 -80795669 + (CA)n Simple_repeat Simple_repeat 1 120 0 6 893 24 0 0 0 chr12 40461996 40462020 -80795510 + AT_rich Low_complexity Low_complexity 1 24 0 6 893 198 314 258 0 chr12 40464275 40464399 -80793131 + L2 LINE L2 2326 2481 -938 6 893 7655 111 12 14 chr12 40464871 40466919 -80790611 - L1_Mus3 LINE L1 0 6638 4582 6 893 3464 101 0 11 chr12 40466916 40467457 -80790073 + L1_Mus3 LINE L1 3918 4452 -1431 6 893 225 0 0 0 chr12 40468271 40468296 -80789234 + (A)n Simple_repeat Simple_repeat 1 25 0 6 893 216 182 0 0 chr12 40468411 40468455 -80789075 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 6 893 468 123 0 0 chr12 40468902 40468975 -80788555 + (CTCTG)n Simple_repeat Simple_repeat 1 73 0 6 893 28 0 0 0 chr12 40469830 40469858 -80787672 + AT_rich Low_complexity Low_complexity 1 28 0 6 893 849 139 0 0 chr12 40470045 40470182 -80787348 + L1_Mm LINE L1 4498 4634 -1249 6 893 6202 89 58 19 chr12 40470174 40471191 -80786339 - MusHAL1 LINE L1 -274 2438 1382 6 893 3809 56 11 0 chr12 40471188 40471728 -80785802 - MusHAL1 LINE L1 -1968 744 199 6 893 2068 87 3 0 chr12 40471740 40472051 -80785479 - L1VL4 LINE L1 -5395 907 596 6 893 180 111 0 0 chr12 40472056 40472083 -80785447 + (T)n Simple_repeat Simple_repeat 1 27 0 6 893 3855 30 22 2 chr12 40472087 40472592 -80784938 + L1_Mm LINE L1 4072 4586 -1297 6 893 995 219 89 34 chr12 40472602 40472928 -80784602 - L1VL4 LINE L1 -5713 589 246 6 893 11107 171 57 48 chr12 40472927 40474902 -80782628 - L1_Mur3 LINE L1 -1841 4039 2066 6 893 486 61 0 0 chr12 40474902 40474968 -80782562 + (CTG)n Simple_repeat Simple_repeat 1 66 0 6 893 11107 179 62 36 chr12 40474968 40476369 -80781161 - L1_Mur3 LINE L1 -3815 2065 616 6 893 427 278 86 72 chr12 40476380 40476836 -80780694 - RLTR15 LTR ERVK -15 344 1 6 893 875 259 0 30 chr12 40476836 40477099 -80780431 - L1_Mur3 LINE L1 -7361 367 113 6 893 338 72 0 28 chr12 40477241 40477312 -80780218 - L1_Mus4 LINE L1 -46 6590 6522 6 893 1621 214 31 28 chr12 40479108 40479321 -80778209 - ORR1D1 LTR MaLR -13 361 149 6 893 279 0 0 0 chr12 40479321 40479352 -80778178 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 6 893 1621 214 31 28 chr12 40479352 40479498 -80778032 - ORR1D1 LTR MaLR -226 148 1 6 893 295 323 34 159 chr12 40479498 40479737 -80777793 + RMER15 LTR ERVL 352 560 -15 6 893 3555 175 52 15 chr12 40479861 40480528 -80777002 - RLTR17 LTR ERVK 0 692 1 6 893 4898 140 12 33 chr12 40480676 40481579 -80775951 - L1_Mus3 LINE L1 -471 5412 4529 6 893 6743 81 76 2 chr12 40481578 40482683 -80774847 + L1_Mus3 LINE L1 5421 6633 -5 6 893 321 222 75 14 chr12 40482803 40482949 -80774581 - L1M4b LINE L1 -3082 3924 3770 6 893 212 103 0 49 chr12 40483036 40483077 -80774453 + T-rich Low_complexity Low_complexity 2 40 0 6 893 1168 75 0 0 chr12 40483078 40483225 -80774305 - B1_Mus2 SINE Alu 0 147 1 6 893 288 262 0 0 chr12 40483258 40483360 -80774170 - L1M4b LINE L1 -3302 3698 3597 6 893 2672 137 15 58 chr12 40483542 40484008 -80773522 + RLTR41 LTR ERV1 1 446 0 6 893 2515 175 40 46 chr12 40484096 40484618 -80772912 + RLTR28 LTR ERVL 1 519 -5 6 893 2012 166 29 149 chr12 40484652 40485012 -80772518 + RLTR23 LTR ERV1 1 304 -126 6 893 1684 135 25 93 chr12 40485012 40485452 -80772078 - RMER17C LTR ERVK 0 410 1 6 893 2012 166 29 149 chr12 40485452 40485580 -80771950 + RLTR23 LTR ERV1 305 430 0 6 893 648 132 15 8 chr12 40485905 40486035 -80771495 + CT-rich Low_complexity Low_complexity 2 132 0 6 893 322 360 71 26 chr12 40486041 40486195 -80771335 - HAL1-3A_ME LINE L1 -414 2444 2284 6 893 402 261 0 0 chr12 40486195 40486333 -80771197 + CT-rich Low_complexity Low_complexity 4 141 0 6 893 317 162 27 9 chr12 40487330 40487442 -80770088 + (TTTG)n Simple_repeat Simple_repeat 2 115 0 6 893 428 377 143 21 chr12 40487590 40487869 -80769661 - L1M4b LINE L1 -6546 788 476 6 893 295 351 34 21 chr12 40487936 40488169 -80769361 - L1M4b LINE L1 -7015 319 84 6 893 251 347 10 139 chr12 40489175 40489369 -80768161 + B4 SINE B4 11 179 -113 6 893 363 89 0 0 chr12 40489451 40489507 -80768023 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 893 326 328 30 0 chr12 40490255 40490389 -80767141 - ID_B1 SINE B4 -5 219 82 6 893 477 271 105 84 chr12 40490395 40490729 -80766801 - Charlie5 DNA MER1_type -1705 919 579 6 893 7066 62 27 19 chr12 40490731 40491727 -80765803 - L1_Mus3 LINE L1 -33 6605 5602 6 893 288 288 27 67 chr12 40492549 40492698 -80764832 - Charlie5 DNA MER1_type -2383 241 99 6 893 483 313 201 13 chr12 40492871 40493250 -80764280 - LTR33C LTR ERVL -179 450 1 6 893 497 307 35 139 chr12 40493990 40494334 -80763196 + ORR1E LTR MaLR 1 308 -51 6 893 744 62 0 169 chr12 40494338 40494492 -80763038 - L1_Mus1 LINE L1 0 6567 6440 6 893 21 36 0 0 chr12 40494995 40495023 -80762507 + AT_rich Low_complexity Low_complexity 1 28 0 6 893 1132 226 115 44 chr12 40496313 40496463 -80761067 + Lx9 LINE L1 7234 7369 -275 6 893 1192 41 0 20 chr12 40496463 40496597 -80760933 + B1_Mus2 SINE Alu 1 134 -13 6 893 252 0 0 0 chr12 40496597 40496625 -80760905 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 893 1192 41 0 20 chr12 40496625 40496639 -80760891 + B1_Mus2 SINE Alu 135 146 -1 6 893 1132 226 115 44 chr12 40496639 40496872 -80760658 + Lx9 LINE L1 7370 7644 0 6 893 22 56 0 0 chr12 40496944 40496980 -80760550 + AT_rich Low_complexity Low_complexity 1 36 0 6 893 1367 79 5 10 chr12 40497953 40498145 -80759385 - B2_Mm2 SINE B2 -3 192 2 6 893 638 242 181 0 chr12 40499137 40499319 -80758211 - B3 SINE B2 0 216 2 6 893 218 264 0 0 chr12 40500072 40500125 -80757405 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 893 508 263 222 20 chr12 40500188 40500218 -80757312 - B4A SINE B4 -43 249 183 2 893 307 271 115 0 chr12 40500218 40500314 -80757216 - PB1D9 SINE Alu -7 113 7 3 893 508 263 222 20 chr12 40500314 40500387 -80757143 - B4A SINE B4 -43 182 11 2 893 241 100 0 48 chr12 40501113 40501125 -80756405 - B1_Mur4 SINE Alu -1 149 139 4 893 243 0 0 0 chr12 40501125 40501152 -80756378 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 5 893 241 100 0 48 chr12 40501152 40501181 -80756349 - B1_Mur4 SINE Alu -12 138 110 4 894 264 30 0 0 chr12 40501409 40501442 -80756088 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 894 1172 54 0 7 chr12 40502287 40502436 -80755094 - B1_Mus1 SINE Alu 0 148 1 7 894 244 333 82 0 chr12 40502754 40502889 -80754641 + L1MEf LINE L1 70 215 -6185 8 894 600 333 70 80 chr12 40503517 40503621 -80753909 + L1MEf LINE L1 1022 1116 -5299 8 894 3007 119 79 14 chr12 40503621 40504117 -80753413 - RLTR11A LTR ERVK 0 528 1 9 894 600 333 70 80 chr12 40504117 40504616 -80752914 + L1MEf LINE L1 1117 1619 -4796 8 894 456 332 115 53 chr12 40504619 40504994 -80752536 + L1ME2 LINE L1 5749 6146 -18 1 894 237 230 10 0 chr12 40505301 40505362 -80752168 + ID2 SINE ID 18 80 -72 1 894 202 342 12 12 chr12 40505521 40505601 -80751929 - L3 LINE CR1 -1 4488 4409 1 894 237 397 6 13 chr12 40506330 40506488 -80751042 - L3 LINE CR1 -630 3859 3703 1 894 614 254 8 16 chr12 40509197 40509325 -80748205 + RSINE1 SINE B4 3 129 -36 1 894 21 57 0 0 chr12 40509325 40509360 -80748170 + AT_rich Low_complexity Low_complexity 1 35 0 1 894 1108 82 0 0 chr12 40509794 40509941 -80747589 + B1_Mm SINE Alu 1 147 0 1 894 266 260 122 14 chr12 40510069 40510143 -80747387 - ID4_ SINE ID 0 83 2 1 894 286 263 0 13 chr12 40510618 40510691 -80746839 + B4 SINE B4 4 72 -220 1 894 247 227 0 0 chr12 40510677 40510721 -80746809 + B4 SINE B4 241 284 -8 1 894 219 327 71 18 chr12 40511187 40511299 -80746231 - MER5A DNA MER1_type -36 153 36 1 894 183 340 149 0 chr12 40511428 40511522 -80746008 + L2b LINE L2 3263 3370 -5 1 894 2537 27 0 0 chr12 40512253 40512547 -80744983 + L1Md_F2 LINE L1 5292 5585 -298 2 894 8302 37 1 1 chr12 40512548 40513541 -80743989 + L1Md_F2 LINE L1 5587 6579 -3 2 894 455 60 15 0 chr12 40513828 40513895 -80743635 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 894 329 262 125 10 chr12 40514322 40514413 -80743117 + PB1D10 SINE Alu 2 105 -12 2 894 483 63 0 0 chr12 40514413 40514476 -80743054 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2 894 329 262 125 10 chr12 40514476 40514488 -80743042 + PB1D10 SINE Alu 106 117 0 2 894 742 306 23 9 chr12 40515570 40515913 -80741617 - Lx9 LINE L1 -52 7592 7245 2 894 223 391 0 0 chr12 40516026 40516113 -80741417 - L2a LINE L2 -1 3425 3339 2 894 588 136 246 0 chr12 40517507 40517625 -80739905 + B1_Mus1 SINE Alu 2 148 0 2 894 216 0 0 0 chr12 40518627 40518651 -80738879 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 894 256 207 17 0 chr12 40519881 40519939 -80737591 + Lx6 LINE L1 7388 7446 -14 2 894 5218 177 45 26 chr12 40519980 40520737 -80736793 - L1_Mur3 LINE L1 -462 5418 4662 2 894 204 40 0 0 chr12 40520737 40520762 -80736768 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 3 894 5218 177 45 26 chr12 40520762 40521119 -80736411 - L1_Mur3 LINE L1 -1219 4661 4283 2 894 3148 174 52 1 chr12 40521112 40521791 -80735739 - L1_Mur3 LINE L1 -3977 1903 1203 2 894 189 0 0 0 chr12 40521791 40521812 -80735718 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 894 2421 255 115 52 chr12 40521812 40522634 -80734896 - L1_Mur3 LINE L1 -6510 1218 308 2 894 329 317 69 0 chr12 40522880 40522981 -80734549 + PB1D10 SINE Alu 2 109 -8 3 894 656 282 6 50 chr12 40522995 40523209 -80734321 + B3A SINE B2 1 203 -13 3 894 261 146 0 0 chr12 40523209 40523257 -80734273 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 894 339 236 86 43 chr12 40523257 40523350 -80734180 + HAL1-3A_ME LINE L1 1975 2071 -787 3 894 1078 141 126 0 chr12 40524210 40524409 -80733121 - URR1A DNA MER1_type 0 226 3 3 894 200 284 82 31 chr12 40525814 40525912 -80731618 + L3 LINE CR1 3059 3161 -1328 3 894 1522 174 109 0 chr12 40526240 40526534 -80730996 + ORR1B2 LTR MaLR 1 326 -41 3 894 577 243 15 60 chr12 40527717 40527879 -80729651 + ID_B1 SINE B4 91 246 -46 3 894 235 242 0 43 chr12 40527929 40527998 -80729532 + GA-rich Low_complexity Low_complexity 4 69 0 4 894 264 30 0 0 chr12 40528631 40528664 -80728866 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 894 1158 61 0 0 chr12 40529000 40529147 -80728383 + B1_Mm SINE Alu 1 147 0 4 894 495 157 0 0 chr12 40529317 40529406 -80728124 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 894 9142 90 37 35 chr12 40529458 40530842 -80726688 - Lx3_Mus LINE L1 0 7009 5624 4 894 922 234 18 41 chr12 40531211 40531429 -80726101 - B3 SINE B2 -3 213 1 4 894 6333 231 36 51 chr12 40532302 40533843 -80723687 - Lx6 LINE L1 -3 7457 5941 4 894 794 334 77 86 chr12 40533848 40534431 -80723099 - RLTR18 LTR ERVK -6 610 33 4 894 1199 207 7 11 chr12 40534454 40534728 -80722802 - Lx7 LINE L1 -1750 5946 5674 4 894 435 288 72 63 chr12 40534728 40534965 -80722565 - RMER2 LTR ERV1 0 567 329 4 894 452 298 75 9 chr12 40535189 40535231 -80722299 - L1_Mur3 LINE L1 -1439 4707 4664 5 894 3014 118 14 2 chr12 40535231 40535665 -80721865 - Lx3A LINE L1 -11 6970 6532 5 894 1406 163 80 0 chr12 40535665 40535967 -80721563 - L1_Mur3 LINE L1 -1483 4663 4308 5 894 4110 145 44 25 chr12 40535960 40536406 -80721124 - L1_Mur3 LINE L1 -2979 2901 2461 5 894 246 32 0 0 chr12 40536406 40536437 -80721093 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 894 4110 145 44 25 chr12 40536437 40536725 -80720805 - L1_Mur3 LINE L1 -3420 2460 2165 5 894 396 0 0 0 chr12 40536725 40536769 -80720761 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 894 4110 145 44 25 chr12 40536769 40536826 -80720704 - L1_Mur3 LINE L1 -3716 2164 2096 5 894 2785 177 75 50 chr12 40536827 40536982 -80720548 + RMER19C LTR ERVK 2 192 -419 5 894 1217 124 5 30 chr12 40536982 40537181 -80720349 + B2_Mm2 SINE B2 1 194 -1 5 894 2785 177 75 50 chr12 40537181 40537608 -80719922 + RMER19C LTR ERVK 193 598 -13 5 894 32453 110 102 16 chr12 40537608 40538424 -80719106 + Lx3_Mus LINE L1 676 1428 -4458 5 894 261 0 0 0 chr12 40538424 40538453 -80719077 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 894 32453 71 16 43 chr12 40538453 40539685 -80717845 + Lx3_Mus LINE L1 1429 2659 -3227 5 894 6088 119 35 10 chr12 40539685 40540619 -80716911 - RMER17B LTR ERVK 0 958 1 5 894 32453 71 16 43 chr12 40540619 40543998 -80713532 + Lx3_Mus LINE L1 2660 5920 -1089 5 894 180 0 0 0 chr12 40543998 40544018 -80713512 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 894 9934 87 20 10 chr12 40544018 40545105 -80712425 + Lx3_Mus LINE L1 5921 7008 -1 5 894 4258 149 27 45 chr12 40545137 40545180 -80712350 - L1_Mur3 LINE L1 -3781 2099 2052 6 894 198 0 0 0 chr12 40545180 40545202 -80712328 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 894 4258 152 28 41 chr12 40545202 40546164 -80711366 - L1_Mur3 LINE L1 -3829 2051 1105 6 894 891 274 12 4 chr12 40546181 40546438 -80711092 - L1_Mur3 LINE L1 -7240 488 230 6 894 21 0 0 0 chr12 40546552 40546573 -80710957 + AT_rich Low_complexity Low_complexity 1 21 0 6 894 216 143 0 0 chr12 40547567 40547609 -80709921 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 894 450 101 0 0 chr12 40548358 40548427 -80709103 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 6 894 197 321 123 0 chr12 40548783 40548889 -80708641 - MIRc SINE MIR -13 255 137 6 894 276 30 0 0 chr12 40548971 40549004 -80708526 + (TTATA)n Simple_repeat Simple_repeat 1 33 0 6 894 475 270 58 26 chr12 40549692 40549848 -80707682 + RSINE1 SINE B4 3 163 -2 6 894 180 163 0 0 chr12 40549848 40549891 -80707639 + GA-rich Low_complexity Low_complexity 1 43 0 6 894 449 214 17 0 chr12 40550174 40550291 -80707239 + (TATG)n Simple_repeat Simple_repeat 2 120 0 6 894 196 370 0 27 chr12 40550592 40550603 -80706927 - L2b LINE L2 -34 3341 3331 7 894 1985 150 125 31 chr12 40550603 40550988 -80706542 - MTC LTR MaLR 0 421 1 7 894 196 370 0 27 chr12 40550988 40551051 -80706479 - L2b LINE L2 -45 3330 3269 7 894 25 31 0 0 chr12 40552823 40552855 -80704675 + AT_rich Low_complexity Low_complexity 1 32 0 7 894 8171 22 35 0 chr12 40552964 40553927 -80703603 + L1Md_F3 LINE L1 5587 6583 -1 7 894 600 266 93 10 chr12 40554407 40554575 -80702955 + Lx7 LINE L1 7181 7367 -329 7 894 186 43 0 0 chr12 40554575 40554598 -80702932 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 894 600 266 93 10 chr12 40554598 40554634 -80702896 + Lx7 LINE L1 7368 7402 -294 7 894 281 270 62 23 chr12 40554669 40554798 -80702732 + Lx7 LINE L1 7563 7696 0 7 894 513 304 32 0 chr12 40554845 40554970 -80702560 + B1F2 SINE Alu 10 138 -11 7 894 2647 229 56 35 chr12 40554970 40555226 -80702304 + Lx8 LINE L1 6545 6796 -677 7 894 2067 94 9 51 chr12 40555226 40555562 -80701968 - RLTRETN_Mm LTR ERVK 0 322 1 7 894 2647 229 56 35 chr12 40555562 40555971 -80701559 + Lx8 LINE L1 6797 7224 -249 7 894 574 138 0 18 chr12 40556054 40556165 -80701365 + GA-rich Low_complexity Low_complexity 2 110 0 7 894 33 66 0 0 chr12 40556445 40556506 -80701024 + AT_rich Low_complexity Low_complexity 1 61 0 8 894 239 0 0 31 chr12 40556670 40556702 -80700828 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 8 894 442 281 0 10 chr12 40556734 40556831 -80700699 - B1F SINE Alu -44 105 10 8 894 251 140 20 0 chr12 40558517 40558567 -80698963 + CT-rich Low_complexity Low_complexity 2 52 0 8 894 3134 244 57 80 chr12 40558893 40560599 -80696931 - Lx5 LINE L1 -15 7035 5382 8 894 2485 152 55 15 chr12 40560599 40561128 -80696402 - Lx5 LINE L1 -1830 4050 3501 8 894 2244 159 20 25 chr12 40561130 40561145 -80696385 - RMER10B LTR ERVL 0 398 390 8 894 2904 44 2 76 chr12 40561145 40561539 -80695991 + RLTR10B2 LTR ERVK 1 365 0 8 894 2244 159 20 25 chr12 40561539 40561923 -80695607 - RMER10B LTR ERVL -9 389 1 8 894 1724 163 5 8 chr12 40561985 40562362 -80695168 - Lx5 LINE L1 -2405 3475 3100 8 894 2510 192 22 67 chr12 40562408 40563414 -80694116 - Lx5 LINE L1 -4076 1804 863 8 894 6034 86 20 8 chr12 40564408 40565265 -80692265 - Lx3A LINE L1 0 6981 6115 8 894 482 260 48 0 chr12 40565324 40565428 -80692102 + RSINE1 SINE B4 57 165 0 8 894 1178 82 0 0 chr12 40565472 40565619 -80691911 - B1_Mus1 SINE Alu 0 148 2 8 894 196 409 129 15 chr12 40567345 40567546 -80689984 + L4 LINE RTE 1161 1384 -645 9 894 658 222 59 0 chr12 40567554 40567689 -80689841 + ID_B1 SINE B4 80 222 -2 9 894 3174 39 0 8 chr12 40567722 40568113 -80689417 + L1Md_F2 LINE L1 6193 6580 -2 9 894 1111 201 15 5 chr12 40568292 40568497 -80689033 - B3 SINE B2 -6 210 4 9 894 180 221 27 81 chr12 40569705 40569779 -80687751 + L4 LINE RTE 1705 1774 -255 9 894 4713 160 52 46 chr12 40570094 40571046 -80686484 - RMER17B LTR ERVK 0 958 2 9 894 1110 274 7 93 chr12 40571659 40571969 -80685561 + B4 SINE B4 10 292 0 9 894 261 0 0 0 chr12 40573359 40573388 -80684142 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 894 284 250 0 40 chr12 40573762 40573837 -80683693 - ID2 SINE ID -10 73 2 9 894 215 61 30 0 chr12 40573879 40573912 -80683618 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 894 326 267 145 8 chr12 40573922 40574039 -80683491 - B1F1 SINE Alu -16 133 1 1 894 459 52 0 0 chr12 40574155 40574213 -80683317 + (CATA)n Simple_repeat Simple_repeat 2 59 0 1 894 791 188 0 0 chr12 40574224 40574352 -80683178 - B1_Mur4 SINE Alu -20 130 3 1 894 1589 70 0 5 chr12 40574369 40574583 -80682947 - L1Md_F2 LINE L1 -10 6572 6360 1 894 206 139 47 0 chr12 40575030 40575073 -80682457 + GA-rich Low_complexity Low_complexity 3 47 0 1 894 212 86 0 28 chr12 40575339 40575375 -80682155 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 1 894 1350 67 0 0 chr12 40575377 40575555 -80681975 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 1 894 791 39 10 0 chr12 40575556 40575659 -80681871 + (GGAAA)n Simple_repeat Simple_repeat 1 104 0 1 894 401 195 99 9 chr12 40575822 40575927 -80681603 - PB1D9 SINE Alu -8 112 1 1 894 583 328 83 16 chr12 40576832 40577086 -80680444 + B4A SINE B4 17 287 -5 1 894 594 319 65 57 chr12 40577423 40577686 -80679844 + B4 SINE B4 9 273 -19 1 894 214 302 0 0 chr12 40579134 40579187 -80678343 + B3 SINE B2 2 54 -162 1 894 1227 219 90 77 chr12 40579210 40579508 -80678022 + MTD-int LTR MaLR 799 1087 -171 1 894 662 248 7 0 chr12 40579508 40579645 -80677885 - B1_Mus2 SINE Alu -9 138 1 1 894 1227 219 90 77 chr12 40579645 40579800 -80677730 + MTD-int LTR MaLR 1088 1258 0 1 894 1243 218 55 4 chr12 40579804 40580039 -80677491 + MTD LTR MaLR 24 270 -149 1 894 278 336 57 9 chr12 40580487 40580592 -80676938 + PB1D10 SINE Alu 7 116 -1 1 894 327 49 0 0 chr12 40580782 40580823 -80676707 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 894 190 106 0 41 chr12 40581598 40581647 -80675883 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 1 894 1085 95 0 0 chr12 40581647 40581794 -80675736 - B1_Mm SINE Alu 0 147 1 1 894 14444 66 3 1 chr12 40581967 40583948 -80673582 + L1Md_F2 LINE L1 3147 5133 -750 1 894 7123 61 0 3 chr12 40583951 40584850 -80672680 + L1Md_F2 LINE L1 5686 6581 -1 1 894 2373 178 5 10 chr12 40585336 40585751 -80671779 + MTC LTR MaLR 1 413 -8 1 894 556 203 57 0 chr12 40586028 40586151 -80671379 + Lx7 LINE L1 7176 7305 -391 1 894 267 240 13 0 chr12 40586179 40586254 -80671276 + Lx7 LINE L1 7292 7367 -329 1 894 1286 220 25 38 chr12 40586256 40586624 -80670906 + Lx7 LINE L1 7316 7678 -18 1 894 38 68 0 0 chr12 40586650 40586723 -80670807 + AT_rich Low_complexity Low_complexity 1 73 0 1 894 264 130 0 0 chr12 40586968 40587014 -80670516 + (CTATA)n Simple_repeat Simple_repeat 5 50 0 1 894 490 195 0 96 chr12 40587131 40587159 -80670371 + Lx8 LINE L1 7225 7245 -228 1 894 2991 146 64 16 chr12 40587159 40587703 -80669827 - RMER15 LTR ERVL -3 572 3 1 894 490 195 0 96 chr12 40587703 40587799 -80669731 + Lx8 LINE L1 7246 7337 -136 1 894 981 212 28 65 chr12 40587834 40587864 -80669666 + B3 SINE B2 8 35 -181 1 894 1059 79 50 0 chr12 40587864 40588004 -80669526 + B1_Mus1 SINE Alu 1 147 -1 1 894 546 16 0 0 chr12 40588011 40588074 -80669456 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 894 981 212 28 65 chr12 40588074 40588252 -80669278 + B3 SINE B2 38 216 0 1 894 486 196 0 42 chr12 40589242 40589386 -80668144 + CT-rich Low_complexity Low_complexity 3 140 0 1 894 802 178 229 8 chr12 40589434 40589576 -80667954 - Lx7 LINE L1 0 7696 7549 1 894 182 37 0 36 chr12 40589576 40589604 -80667926 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 1 894 802 178 229 8 chr12 40589604 40589710 -80667820 - Lx7 LINE L1 -148 7548 7393 1 894 570 157 127 0 chr12 40589680 40589790 -80667740 - Lx7 LINE L1 -301 7159 7044 1 894 1582 21 5 0 chr12 40590372 40590562 -80666968 - L1Md_A LINE L1 -1 6581 6391 1 894 10485 17 0 0 chr12 40590562 40591828 -80665702 + L1_Mm LINE L1 3923 5188 -695 1 894 793 216 58 5 chr12 40591845 40592036 -80665494 - Lx7 LINE L1 -431 7029 6829 1 894 180 77 0 0 chr12 40592922 40592948 -80664582 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 894 901 138 14 14 chr12 40593002 40593142 -80664388 - B1_Mur4 SINE Alu -10 140 1 1 894 783 67 0 0 chr12 40593264 40593368 -80664162 + B1_Mus1 SINE Alu 2 105 -43 1 894 602 233 42 0 chr12 40593468 40593588 -80663942 + RSINE1 SINE B4 12 136 -29 1 894 26 0 0 0 chr12 40595414 40595440 -80662090 + AT_rich Low_complexity Low_complexity 1 26 0 1 894 246 411 88 34 chr12 40595502 40595741 -80661789 - LTR16E2 LTR ERVL -238 330 79 1 894 212 281 0 0 chr12 40596398 40596455 -80661075 + T-rich Low_complexity Low_complexity 1 57 0 1 894 626 299 116 30 chr12 40597056 40597452 -80660078 - L1M4 LINE L1 -826 5320 4891 1 894 27 29 0 0 chr12 40597785 40597819 -80659711 + AT_rich Low_complexity Low_complexity 1 34 0 1 894 794 304 78 9 chr12 40598909 40599241 -80658289 + ORR1E LTR MaLR 1 355 -4 1 894 634 263 0 0 chr12 40599486 40599619 -80657911 + B1_Mur1 SINE Alu 5 137 -12 1 894 1659 250 31 12 chr12 40599702 40600115 -80657415 + Lx6 LINE L1 7013 7433 -27 1 894 729 227 78 55 chr12 40602649 40602868 -80654662 + ID_B1 SINE B4 1 224 0 1 894 476 286 0 0 chr12 40602945 40603057 -80654473 + PB1D9 SINE Alu 8 119 -1 1 894 183 42 0 0 chr12 40603321 40603345 -80654185 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 1 894 5550 123 17 17 chr12 40603719 40604561 -80652969 - Lx2 LINE L1 -1 6996 6155 1 894 661 95 9 0 chr12 40604561 40604666 -80652864 - Lx2 LINE L1 -937 6060 5955 1 894 1529 73 0 0 chr12 40604665 40604869 -80652661 - Lx2 LINE L1 -1203 5794 5591 1 894 21 0 0 0 chr12 40604939 40604960 -80652570 + AT_rich Low_complexity Low_complexity 1 21 0 1 894 388 223 0 0 chr12 40605494 40605588 -80651942 + L1MA5 LINE L1 6176 6269 -31 1 894 423 0 0 0 chr12 40605863 40605910 -80651620 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 894 263 61 20 0 chr12 40606234 40606283 -80651247 - Lx3_Mus LINE L1 0 7009 6960 1 894 250 204 20 0 chr12 40606541 40606590 -80650940 - Lx8 LINE L1 -303 7170 7121 1 894 372 141 42 217 chr12 40606600 40606730 -80650800 - RMER17C LTR ERVK -135 275 183 1 894 519 17 0 0 chr12 40606730 40606790 -80650740 + (GAGAA)n Simple_repeat Simple_repeat 1 60 0 1 894 372 141 42 217 chr12 40606790 40606876 -80650654 - RMER17C LTR ERVK -228 182 97 1 894 301 226 0 0 chr12 40606877 40606939 -80650591 - Lx8 LINE L1 -351 7122 7061 1 894 217 337 0 33 chr12 40610390 40610482 -80647048 - MER5A DNA MER1_type -8 181 93 1 894 554 208 10 0 chr12 40610615 40610716 -80646814 - B4A SINE B4 -3 289 188 1 894 2213 209 68 81 chr12 40610716 40610803 -80646727 + RMER20B LTR ERVK 1 83 -544 1 894 1102 82 0 20 chr12 40610803 40610953 -80646577 + B1_Mus2 SINE Alu 1 147 0 1 894 2213 209 68 81 chr12 40610953 40611484 -80646046 + RMER20B LTR ERVK 84 611 -16 1 894 510 362 11 11 chr12 40611503 40611679 -80645851 - B4A SINE B4 -116 176 1 1 894 30 59 0 0 chr12 40613280 40613331 -80644199 + AT_rich Low_complexity Low_complexity 1 51 0 1 894 681 296 96 25 chr12 40613349 40613630 -80643900 - MLT1A0 LTR MaLR -7 358 58 1 894 247 205 0 37 chr12 40613726 40613807 -80643723 + (CATA)n Simple_repeat Simple_repeat 2 79 0 1 894 1052 88 6 0 chr12 40613970 40614141 -80643389 + (TAGA)n Simple_repeat Simple_repeat 1 172 0 1 894 1710 248 55 11 chr12 40614697 40615169 -80642361 + RLTR16 LTR ERVK 1 493 -12 1 894 624 229 27 5 chr12 40615262 40615446 -80642084 + Lx9 LINE L1 7302 7489 -155 1 894 2560 191 155 11 chr12 40615682 40616216 -80641314 - RMER19C LTR ERVK 0 611 1 1 894 1751 221 92 12 chr12 40616641 40617089 -80640441 - MT2A LTR ERVL -3 530 83 1 894 894 141 35 86 chr12 40617092 40617348 -80640182 + Lx9 LINE L1 7400 7642 -2 1 894 796 200 7 0 chr12 40617353 40617498 -80640032 + B1_Mus1 SINE Alu 2 147 -1 1 894 479 148 12 58 chr12 40617525 40617611 -80639919 - MT2A LTR ERVL -445 88 7 1 894 6095 87 6 22 chr12 40617786 40618621 -80638909 + RLTR13B2 LTR ERVK 1 822 0 1 894 31 44 0 0 chr12 40618733 40618778 -80638752 + AT_rich Low_complexity Low_complexity 1 45 0 1 894 2064 152 81 11 chr12 40619279 40619638 -80637892 + ORR1B1 LTR MaLR 3 386 -8 1 894 2790 111 52 66 chr12 40620079 40620612 -80636918 + L1_Mus3 LINE L1 6108 6633 -5 1 894 193 253 167 39 chr12 40621416 40621494 -80636036 - MIRb SINE MIR -117 151 64 1 894 749 283 167 36 chr12 40622430 40622789 -80634741 + MTC LTR MaLR 2 407 -14 1 894 312 327 64 0 chr12 40623183 40623293 -80634237 + B4A SINE B4 5 121 -171 1 894 290 333 105 59 chr12 40624897 40625050 -80632480 - MIRb SINE MIR -80 188 29 1 894 209 108 27 0 chr12 40625406 40625443 -80632087 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 1 894 36597 15 4 7 chr12 40626114 40631668 -80625862 + L1Md_A LINE L1 53 5586 -297 1 111 8869 13 0 0 chr12 40631668 40632664 -80624866 + L1Md_A LINE L1 5587 6582 0 1 895 646 110 50 0 chr12 40632877 40632977 -80624553 + B1_Mus1 SINE Alu 26 130 -18 1 895 623 154 8 0 chr12 40632979 40633096 -80624434 + GA-rich Low_complexity Low_complexity 3 120 0 1 895 369 206 0 0 chr12 40633110 40633212 -80624318 + (TGG)n Simple_repeat Simple_repeat 3 104 0 1 895 229 255 20 0 chr12 40633899 40633950 -80623580 - MIRm SINE MIR -6 270 219 1 895 1785 204 69 23 chr12 40635094 40635526 -80622004 - Lx9 LINE L1 -101 7543 7092 1 895 306 293 181 0 chr12 40635576 40635709 -80621821 + L1M5 LINE L1 5546 5702 -422 1 895 2660 272 68 26 chr12 40635781 40636740 -80620790 - Lx9 LINE L1 -52 7592 6594 1 895 449 158 35 9 chr12 40636813 40636928 -80620602 + (CATATA)n Simple_repeat Simple_repeat 3 120 0 1 895 491 304 16 0 chr12 40636965 40637090 -80620440 - B1F SINE Alu -22 127 1 1 895 250 342 40 0 chr12 40637026 40637102 -80620428 - B4A SINE B4 -140 152 74 1 895 3072 60 5 0 chr12 40637508 40637893 -80619637 - L1_Mus1 LINE L1 0 6567 6181 1 895 239 91 68 0 chr12 40638417 40638461 -80619069 - Lx5 LINE L1 -1075 5975 5929 1 895 3830 194 44 7 chr12 40638530 40639367 -80618163 + Lx5 LINE L1 6175 7042 -8 1 895 375 309 160 16 chr12 40639500 40639694 -80617836 + MLT1D LTR MaLR 265 486 -19 1 895 611 269 17 38 chr12 40640240 40640476 -80617054 - Lx9 LINE L1 -1484 5989 5759 1 895 739 261 84 27 chr12 40640463 40640905 -80616625 + L1M2 LINE L1 4370 4836 -1307 1 895 30 0 0 0 chr12 40640931 40640961 -80616569 + AT_rich Low_complexity Low_complexity 1 30 0 1 895 233 224 12 84 chr12 40640961 40641005 -80616525 + Lx7 LINE L1 5359 5402 -478 1 895 1512 201 90 6 chr12 40641005 40641350 -80616180 - ORR1D1 LTR MaLR 0 374 1 1 895 233 224 12 84 chr12 40641350 40641388 -80616142 + Lx7 LINE L1 5403 5435 -445 1 895 215 296 0 18 chr12 40641409 40641464 -80616066 + polypurine Low_complexity Low_complexity 3 56 0 2 895 452 271 92 15 chr12 40641505 40641711 -80615819 + Lx7 LINE L1 5503 5758 -1938 1 895 253 0 54 0 chr12 40644001 40644038 -80613492 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 895 372 177 12 60 chr12 40644746 40644830 -80612700 - B3 SINE B2 -136 80 1 2 895 410 305 60 15 chr12 40644942 40645075 -80612455 + MER20 DNA MER1_type 17 155 -64 2 895 1239 185 20 36 chr12 40645720 40645967 -80611563 - ORR1B2 LTR MaLR -124 243 1 2 895 277 292 113 43 chr12 40646037 40646223 -80611307 + MIR SINE MIR 2 200 -62 2 895 268 267 68 19 chr12 40646300 40646403 -80611127 - PB1D7 SINE Alu 0 149 42 2 895 180 0 0 0 chr12 40646961 40646981 -80610549 + (T)n Simple_repeat Simple_repeat 1 20 0 2 895 225 233 16 16 chr12 40648099 40648160 -80609370 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 2 895 190 315 185 0 chr12 40648284 40648392 -80609138 + MIRc SINE MIR 66 193 -75 2 895 658 242 70 19 chr12 40648495 40648651 -80608879 - B3 SINE B2 -6 210 47 2 895 247 234 70 23 chr12 40648918 40649005 -80608525 - B2_Mm2 SINE B2 -106 92 2 2 895 268 372 60 24 chr12 40649047 40649215 -80608315 - L3 LINE CR1 -2 4487 4314 2 895 381 236 80 18 chr12 40650295 40650407 -80607123 - PB1D9 SINE Alu 0 120 2 2 895 399 41 0 0 chr12 40650431 40650480 -80607050 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 895 322 384 31 36 chr12 40650537 40650761 -80606769 + L1ME3 LINE L1 5910 6132 -30 2 895 526 86 21 11 chr12 40651425 40651519 -80606011 + (GTTTG)n Simple_repeat Simple_repeat 1 95 0 2 895 776 132 35 0 chr12 40651519 40651663 -80605867 + ORR1B1 LTR MaLR 2 150 -244 2 895 519 270 0 116 chr12 40651767 40651922 -80605608 - ID_B1 SINE B4 0 224 88 2 895 24 32 0 0 chr12 40652193 40652224 -80605306 + AT_rich Low_complexity Low_complexity 1 31 0 2 895 378 0 0 0 chr12 40652421 40652463 -80605067 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 895 767 213 58 32 chr12 40652466 40652621 -80604909 - B3A SINE B2 -38 160 2 2 895 466 308 70 41 chr12 40652621 40652909 -80604621 + MLT2B2 LTR ERVL 68 552 -7 2 895 260 347 39 31 chr12 40653887 40654015 -80603515 + MIRb SINE MIR 31 159 -109 2 895 194 0 39 0 chr12 40654171 40654197 -80603333 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2 895 1113 75 7 0 chr12 40654198 40654344 -80603186 - B1_Mm SINE Alu 0 147 1 2 895 450 0 0 0 chr12 40654750 40654800 -80602730 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 895 914 176 63 0 chr12 40655595 40655817 -80601713 - Lx9 LINE L1 -6 7638 7403 2 895 490 270 94 94 chr12 40656297 40656649 -80600881 - RLTR11B LTR ERVK -94 359 8 2 895 215 161 71 0 chr12 40656768 40656824 -80600706 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2 895 299 25 25 0 chr12 40658188 40658228 -80599302 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 2 895 288 144 0 0 chr12 40659053 40659118 -80598412 + L1M4 LINE L1 4974 5038 -1102 2 895 466 250 87 33 chr12 40659133 40659438 -80598092 + L1M4 LINE L1 5127 5445 -729 2 895 609 272 24 18 chr12 40659455 40659621 -80597909 + ID_B1 SINE B4 81 246 -46 2 895 390 91 0 0 chr12 40659621 40659676 -80597854 + (GGA)n Simple_repeat Simple_repeat 1 55 0 2 895 244 158 17 17 chr12 40659688 40659746 -80597784 + A-rich Low_complexity Low_complexity 2 59 0 2 895 201 254 0 35 chr12 40659748 40659805 -80597725 + GA-rich Low_complexity Low_complexity 2 56 0 2 895 404 306 116 53 chr12 40661175 40661365 -80596165 - LTR33 LTR ERVL 0 515 314 2 895 205 291 78 44 chr12 40661953 40662043 -80595487 - MIRb SINE MIR -57 211 119 2 895 443 276 70 16 chr12 40663514 40663643 -80593887 + ID_B1 SINE B4 87 222 -2 2 895 23 0 0 0 chr12 40664223 40664246 -80593284 + AT_rich Low_complexity Low_complexity 1 23 0 2 895 25 0 0 0 chr12 40664732 40664757 -80592773 + AT_rich Low_complexity Low_complexity 1 25 0 2 895 477 0 0 0 chr12 40664832 40664885 -80592645 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 895 239 300 30 8 chr12 40664925 40665056 -80592474 + (TG)n Simple_repeat Simple_repeat 1 134 0 2 895 401 0 20 0 chr12 40665101 40665150 -80592380 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 895 5008 68 2 10 chr12 40666843 40667453 -80590077 - L1_Mus1 LINE L1 0 6567 5963 2 895 475 278 40 0 chr12 40667868 40667994 -80589536 + B1F SINE Alu 19 149 0 2 895 378 171 0 0 chr12 40668193 40668263 -80589267 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 895 470 248 0 71 chr12 40668524 40668650 -80588880 + B4 SINE B4 107 223 -69 2 895 345 154 0 84 chr12 40668685 40668756 -80588774 + B4A SINE B4 228 292 0 2 895 212 186 17 0 chr12 40668756 40668815 -80588715 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 895 369 0 0 0 chr12 40668993 40669034 -80588496 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 895 238 328 0 0 chr12 40669101 40669165 -80588365 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 2 895 453 286 128 10 chr12 40669801 40670098 -80587432 - Arthur1 DNA Tip100 -3 3944 3613 2 895 275 282 120 15 chr12 40670603 40670736 -80586794 + B1F SINE Alu 1 147 -2 2 895 321 229 47 35 chr12 40670745 40670831 -80586699 + BC1_Mm scRNA scRNA 9 95 -57 2 895 238 301 77 10 chr12 40670972 40671076 -80586454 + MLT2B5 LTR ERVL 297 407 -194 2 895 582 15 0 0 chr12 40671373 40671440 -80586090 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 895 289 145 32 0 chr12 40671440 40671502 -80586028 + GA-rich Low_complexity Low_complexity 2 65 0 2 895 181 245 19 75 chr12 40672186 40672239 -80585291 + MIRc SINE MIR 32 81 -187 2 895 806 195 0 0 chr12 40672491 40672619 -80584911 - B1_Mus2 SINE Alu -18 129 2 2 895 25 0 0 0 chr12 40672974 40672999 -80584531 + AT_rich Low_complexity Low_complexity 1 25 0 2 895 405 0 0 0 chr12 40673090 40673135 -80584395 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 895 791 186 0 8 chr12 40673138 40673268 -80584262 - B1_Mur4 SINE Alu -11 139 11 2 895 722 250 98 20 chr12 40673276 40673480 -80584050 - B4A SINE B4 -59 233 14 2 895 2349 217 117 36 chr12 40673963 40674595 -80582935 - RMER1C Other Other -58 1284 602 2 895 285 270 48 39 chr12 40674802 40674906 -80582624 - RMER1B Other Other -913 153 49 2 895 260 106 45 34 chr12 40674930 40675018 -80582512 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 895 255 61 0 0 chr12 40675701 40675734 -80581796 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 895 849 235 118 0 chr12 40675734 40675938 -80581592 - RMER1C Other Other -1100 242 15 2 895 345 256 39 0 chr12 40676076 40676154 -80581376 - RMER1B Other Other -348 718 638 2 895 1604 104 4 4 chr12 40676318 40676549 -80580981 + Lx2 LINE L1 6767 6997 0 2 895 1380 59 0 0 chr12 40676666 40676835 -80580695 - L1Md_T LINE L1 0 6582 6414 2 895 392 325 180 10 chr12 40676843 40677148 -80580382 - L1MD2 LINE L1 -352 6007 5651 2 895 391 229 33 17 chr12 40677164 40677284 -80580246 - L1MD2 LINE L1 -785 5574 5453 2 895 330 87 0 0 chr12 40677437 40677483 -80580047 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 895 376 283 0 11 chr12 40677485 40677578 -80579952 - RMER12 LTR ERVK -471 851 760 2 895 205 70 70 0 chr12 40677761 40677804 -80579726 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 2 895 578 269 8 0 chr12 40677837 40677971 -80579559 - B1F SINE Alu -10 139 5 2 895 240 288 27 14 chr12 40678009 40678083 -80579447 - MTE2b LTR MaLR -11 368 294 2 895 234 222 173 48 chr12 40678271 40678375 -80579155 - MTE2b LTR MaLR -241 118 2 2 895 206 234 0 0 chr12 40679175 40679222 -80578308 + MER5A DNA MER1_type 71 117 -72 2 895 645 337 33 52 chr12 40679914 40680186 -80577344 + B4 SINE B4 12 278 -14 2 895 525 313 13 39 chr12 40681047 40681200 -80576330 + B1F SINE Alu 1 149 0 2 895 291 130 0 0 chr12 40681767 40681821 -80575709 + (TTTTG)n Simple_repeat Simple_repeat 1 54 0 2 895 317 255 143 0 chr12 40681843 40681941 -80575589 - PB1D7 SINE Alu -8 112 1 2 895 1319 90 57 0 chr12 40682042 40682219 -80575311 - B2_Mm2 SINE B2 -7 188 2 2 895 592 261 21 0 chr12 40682604 40682746 -80574784 + B1F1 SINE Alu 5 149 0 2 895 1078 231 5 0 chr12 40683910 40684113 -80573417 + B3 SINE B2 7 210 -6 2 895 221 0 35 0 chr12 40684223 40684252 -80573278 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 895 180 77 0 0 chr12 40685568 40685594 -80571936 + (CAA)n Simple_repeat Simple_repeat 1 26 0 2 895 543 279 11 130 chr12 40686522 40686707 -80570823 + RSINE1 SINE B4 3 165 0 2 895 248 0 0 30 chr12 40686716 40686749 -80570781 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2 895 30 0 0 0 chr12 40686753 40686783 -80570747 + AT_rich Low_complexity Low_complexity 1 30 0 2 895 33130 79 11 10 chr12 40687213 40692398 -80565132 + L1Md_F2 LINE L1 392 5586 -297 2 895 7564 83 21 15 chr12 40692398 40693378 -80564152 + L1Md_F2 LINE L1 5587 6572 -10 2 895 926 205 116 0 chr12 40693627 40693817 -80563713 - B3 SINE B2 -4 212 1 2 895 340 253 41 53 chr12 40693817 40693988 -80563542 + L1MA6 LINE L1 6132 6300 0 2 895 185 0 40 0 chr12 40696023 40696048 -80561482 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 895 1092 230 14 18 chr12 40696633 40696850 -80560680 - B3 SINE B2 0 216 1 2 895 1091 180 11 0 chr12 40698141 40698319 -80559211 - RLTR17 LTR ERVK -326 366 187 2 895 1480 139 101 254 chr12 40698379 40698804 -80558726 + ORR1B2 LTR MaLR 4 363 -4 2 895 309 237 52 13 chr12 40698954 40699031 -80558499 - ID SINE ID -144 80 1 2 895 306 133 0 0 chr12 40699141 40699186 -80558344 + RMER30 DNA MER1_type 7 51 -151 2 895 198 0 0 0 chr12 40699280 40699302 -80558228 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 895 277 277 85 1 chr12 40700260 40700365 -80557165 - MTEb LTR MaLR 0 379 246 2 895 759 210 146 29 chr12 40701428 40701778 -80555752 + RLTR28 LTR ERVL 16 418 -63 2 895 233 143 71 0 chr12 40703210 40703252 -80554278 + tRNA-Ala-GCA tRNA tRNA 6 50 -25 2 895 180 77 0 0 chr12 40703659 40703685 -80553845 + (TTAG)n Simple_repeat Simple_repeat 3 28 0 3 895 4074 143 28 114 chr12 40703758 40704616 -80552914 + RMER21B LTR ERV1 57 840 -2 3 895 231 208 21 0 chr12 40705774 40705822 -80551708 - L2a LINE L2 -2 3424 3376 3 895 3223 66 5 10 chr12 40706680 40707078 -80550452 - MTA_Mm LTR MaLR 0 396 1 3 895 635 329 30 61 chr12 40707425 40707787 -80549743 + Lx8 LINE L1 7120 7470 -3 3 895 1237 55 14 0 chr12 40707980 40708125 -80549405 - B1_Mm SINE Alu 0 147 1 3 895 650 180 85 8 chr12 40708350 40708479 -80549051 + B1_Mur3 SINE Alu 10 148 -1 3 895 752 80 0 10 chr12 40708586 40708687 -80548843 - B1_Mus2 SINE Alu 0 147 48 3 895 362 287 28 9 chr12 40708860 40708969 -80548561 + PB1D10 SINE Alu 2 112 -5 3 895 3063 60 16 0 chr12 40709742 40710124 -80547406 - L1_Mus3 LINE L1 -6 6632 6245 3 895 383 225 153 27 chr12 40710482 40710665 -80546865 + MMAR1 DNA Mariner 6 211 -1075 3 895 216 0 0 0 chr12 40710668 40710692 -80546838 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 895 566 167 42 0 chr12 40710692 40710788 -80546742 - B1_Mur2 SINE Alu -10 139 40 3 895 300 189 0 0 chr12 40710791 40710865 -80546665 + CT-rich Low_complexity Low_complexity 2 75 0 3 895 241 196 137 0 chr12 40710870 40710921 -80546609 - PB1D9 SINE Alu -61 59 2 3 895 844 253 108 12 chr12 40710921 40711160 -80546370 + MMAR1 DNA Mariner 209 470 -816 3 895 693 124 176 32 chr12 40711166 40711291 -80546239 + B1_Mus2 SINE Alu 5 147 0 3 895 299 146 21 0 chr12 40711335 40711383 -80546147 - RMER1B Other Other -646 420 372 3 895 3890 161 28 44 chr12 40711504 40711960 -80545570 - RMER1B Other Other 0 1066 630 3 895 2490 72 119 11 chr12 40711960 40712312 -80545218 + RLTR10 LTR ERVK 1 390 0 3 895 3890 161 28 44 chr12 40712312 40712577 -80544953 - RMER1B Other Other -437 629 357 3 895 697 259 12 18 chr12 40712691 40712860 -80544670 + MMAR1 DNA Mariner 708 875 -411 3 895 1144 254 22 15 chr12 40712861 40713133 -80544397 + MMAR1 DNA Mariner 842 1115 -171 3 895 279 139 0 0 chr12 40713128 40713171 -80544359 + MMAR1 DNA Mariner 1235 1277 -9 3 895 32 26 0 0 chr12 40714184 40714223 -80543307 + AT_rich Low_complexity Low_complexity 1 39 0 3 895 1407 84 17 0 chr12 40714227 40714405 -80543125 + B2_Mm2 SINE B2 3 183 -12 3 895 279 0 0 0 chr12 40715291 40715322 -80542208 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 895 826 143 38 0 chr12 40715368 40715501 -80542029 - B1_Mus1 SINE Alu -1 147 10 3 895 198 0 0 0 chr12 40715514 40715536 -80541994 + (T)n Simple_repeat Simple_repeat 1 22 0 3 895 261 294 118 0 chr12 40715665 40715733 -80541797 + RSINE1 SINE B4 3 78 -87 3 895 250 333 57 57 chr12 40715738 40715913 -80541617 - RLTR18 LTR ERVK -4 508 334 3 895 1065 245 223 0 chr12 40716228 40716546 -80540984 + Lx6 LINE L1 6634 7033 -663 3 895 333 240 0 0 chr12 40716609 40716684 -80540846 + B1_Mur3 SINE Alu 71 145 -4 3 895 311 336 91 48 chr12 40716808 40717039 -80540491 - RLTR18 LTR ERVK -343 273 33 3 895 391 217 11 57 chr12 40717065 40717153 -80540377 + RSINE1 SINE B4 82 165 0 3 895 243 0 0 0 chr12 40717717 40717744 -80539786 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 895 495 332 48 34 chr12 40717908 40718176 -80539354 - MLT1F1 LTR MaLR -8 561 290 3 895 348 315 168 12 chr12 40718187 40718354 -80539176 - MLT1F1 LTR MaLR -369 200 8 3 895 421 222 12 12 chr12 40718419 40718501 -80539029 + ID4_ SINE ID 1 82 -1 3 895 229 263 0 17 chr12 40718580 40718638 -80538892 + B4A SINE B4 236 292 0 3 895 233 299 56 112 chr12 40718613 40718756 -80538774 - RMER12 LTR ERVK -474 848 714 3 895 342 340 81 64 chr12 40718810 40718983 -80538547 - MLT1D LTR MaLR -307 198 23 3 895 237 339 113 60 chr12 40720301 40720549 -80536981 - L2 LINE L2 -505 2914 2654 3 895 1219 200 5 23 chr12 40720559 40720774 -80536756 + B3 SINE B2 3 213 -3 3 895 271 236 121 52 chr12 40721597 40721684 -80535846 + B3A SINE B2 62 163 -35 3 895 441 0 0 0 chr12 40721684 40721733 -80535797 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 895 222 236 121 52 chr12 40721733 40721761 -80535769 + B2_Mm2 SINE B2 158 185 -10 3 895 331 254 87 9 chr12 40723413 40723528 -80534002 - L1MA7 LINE L1 -12 6279 6156 3 895 413 267 17 33 chr12 40723616 40723736 -80533794 - L1MA7 LINE L1 -391 5900 5783 3 895 22 35 0 0 chr12 40724289 40724318 -80533212 + AT_rich Low_complexity Low_complexity 1 29 0 3 895 413 19 19 0 chr12 40724969 40725023 -80532507 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 3 895 198 103 0 0 chr12 40725440 40725469 -80532061 + (A)n Simple_repeat Simple_repeat 1 29 0 3 895 1942 176 204 33 chr12 40726230 40726682 -80530848 - RLTR24 LTR ERV1 0 529 1 3 895 1697 108 24 6 chr12 40726709 40727073 -80530457 - ORR1A2 LTR MaLR 0 346 1 3 895 4596 83 26 0 chr12 40727073 40727642 -80529888 - MT2B2 LTR ERVL 0 584 1 3 895 814 137 62 35 chr12 40727960 40728104 -80529426 + B1_Mur4 SINE Alu 1 148 -2 3 895 22 0 0 0 chr12 40728108 40728130 -80529400 + AT_rich Low_complexity Low_complexity 1 22 0 3 895 22 0 0 0 chr12 40728260 40728282 -80529248 + AT_rich Low_complexity Low_complexity 1 22 0 3 895 641 219 29 21 chr12 40728375 40728515 -80529015 - B1_Mur2 SINE Alu 0 149 9 3 895 382 263 61 95 chr12 40728392 40728539 -80528991 - MT2B LTR ERVL -320 281 140 3 895 465 19 0 0 chr12 40728591 40728645 -80528885 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 895 354 241 10 94 chr12 40728653 40728749 -80528781 - B3A SINE B2 -47 151 64 3 895 1079 97 0 0 chr12 40728859 40728993 -80528537 + B1_Mus2 SINE Alu 2 135 -12 3 895 636 81 0 0 chr12 40728994 40729081 -80528449 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 3 895 189 107 0 0 chr12 40729284 40729312 -80528218 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3 895 22 0 0 0 chr12 40729374 40729396 -80528134 + AT_rich Low_complexity Low_complexity 1 22 0 3 895 7540 67 2 18 chr12 40729414 40731040 -80526490 - L1Md_F2 LINE L1 -2 6580 4991 3 895 909 98 0 0 chr12 40731680 40731823 -80525707 + (TG)n Simple_repeat Simple_repeat 1 143 0 3 895 335 145 48 0 chr12 40732241 40732303 -80525227 + PB1D7 SINE Alu 56 120 0 3 895 22 0 0 0 chr12 40732454 40732476 -80525054 + AT_rich Low_complexity Low_complexity 1 22 0 3 895 398 300 14 35 chr12 40732550 40732695 -80524835 - B1_Mur1 SINE Alu -1 148 7 3 895 1678 100 15 37 chr12 40732746 40733016 -80524514 - MT2B LTR ERVL 0 601 338 3 895 302 229 0 16 chr12 40733010 40733072 -80524458 + B1_Mur3 SINE Alu 73 133 -16 3 895 378 0 0 0 chr12 40733089 40733131 -80524399 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 895 279 264 77 0 chr12 40733465 40733556 -80523974 - MLT1A1 LTR MaLR -237 171 74 3 895 518 251 81 59 chr12 40733870 40734056 -80523474 + ORR1E LTR MaLR 1 190 -169 3 895 2341 178 24 65 chr12 40734130 40734211 -80523319 - Lx9 LINE L1 -159 7485 7400 3 895 3328 34 39 8 chr12 40734211 40734595 -80522935 - MTA_Mm LTR MaLR 0 396 1 3 895 2341 178 24 65 chr12 40734595 40735007 -80522523 - Lx9 LINE L1 -245 7399 7012 3 895 375 248 139 32 chr12 40735012 40735170 -80522360 - RCHARR1 DNA MER1_type -763 211 37 3 895 662 133 9 0 chr12 40735521 40735634 -80521896 + (GA)n Simple_repeat Simple_repeat 2 115 0 3 895 470 276 0 0 chr12 40736316 40736421 -80521109 + PB1D10 SINE Alu 12 116 -1 3 895 569 110 0 11 chr12 40736797 40736889 -80520641 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 895 861 284 60 57 chr12 40737867 40738132 -80519398 + B4A SINE B4 27 292 0 3 895 411 250 0 0 chr12 40738153 40738317 -80519213 + (CA)n Simple_repeat Simple_repeat 2 165 0 3 895 325 82 20 20 chr12 40738317 40738367 -80519163 + HAL1-3A_ME LINE L1 1976 2025 -833 3 895 198 314 32 32 chr12 40740419 40740544 -80516986 - L2 LINE L2 -1049 2370 2246 3 895 356 250 21 21 chr12 40741152 40741246 -80516284 + B1F SINE Alu 5 98 -51 3 895 571 313 89 13 chr12 40741310 40741546 -80515984 + RMER5 LTR ERV1 32 285 -249 3 895 2232 141 72 5 chr12 40741550 40741936 -80515594 - MTC LTR MaLR -8 413 2 3 895 906 227 32 9 chr12 40741954 40742172 -80515358 + RMER5 LTR ERV1 301 523 -11 3 895 196 53 53 0 chr12 40742256 40742294 -80515236 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 3 895 21 0 0 0 chr12 40742358 40742379 -80515151 + AT_rich Low_complexity Low_complexity 1 21 0 3 895 527 284 47 83 chr12 40742896 40743088 -80514442 + B3A SINE B2 3 187 -11 3 895 218 42 0 77 chr12 40744820 40744872 -80512658 + (TCTCCC)n Simple_repeat Simple_repeat 5 52 0 3 895 406 293 125 17 chr12 40744971 40745284 -80512246 - L1MB1 LINE L1 -265 5924 5520 3 895 338 292 8 102 chr12 40745545 40745663 -80511867 + PB1D7 SINE Alu 1 107 -13 3 895 640 266 253 35 chr12 40745657 40745990 -80511540 - MTE2a LTR MaLR -7 372 1 3 895 378 0 0 0 chr12 40746016 40746058 -80511472 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 895 549 0 0 0 chr12 40746058 40746118 -80511412 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 895 229 211 51 90 chr12 40746452 40746484 -80511046 - L1MB8 LINE L1 -9 6169 6143 3 895 758 206 56 7 chr12 40746484 40746626 -80510904 - B1_Mur3 SINE Alu 0 149 1 3 895 229 211 51 90 chr12 40746626 40746671 -80510859 - L1MB8 LINE L1 -36 6142 6095 3 895 428 306 105 31 chr12 40746741 40746903 -80510627 + Tigger5 DNA MER2_type 2131 2304 -102 3 895 30 27 0 0 chr12 40747235 40747272 -80510258 + AT_rich Low_complexity Low_complexity 1 37 0 3 895 302 169 0 15 chr12 40747352 40747418 -80510112 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 895 808 275 26 11 chr12 40747425 40747616 -80509914 - B4A SINE B4 -4 288 95 3 895 417 20 0 0 chr12 40747617 40747667 -80509863 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 895 257 109 22 0 chr12 40747977 40748023 -80509507 + (TCTCCC)n Simple_repeat Simple_repeat 2 48 0 3 895 582 257 7 0 chr12 40748444 40748580 -80508950 + MLT2B3 LTR ERVL 1 137 -417 3 895 307 316 67 56 chr12 40748580 40748622 -80508908 + MTEa LTR MaLR 1 180 -199 3 895 896 137 22 0 chr12 40748714 40748853 -80508677 + B1_Mus1 SINE Alu 5 146 -2 3 895 183 100 0 0 chr12 40748858 40748888 -80508642 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 3 895 506 271 63 21 chr12 40749201 40749344 -80508186 - B1F SINE Alu 0 149 1 4 895 204 40 0 0 chr12 40749430 40749455 -80508075 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 4 895 887 133 104 0 chr12 40749455 40749590 -80507940 - B1_Mur4 SINE Alu -1 149 1 4 895 337 263 192 0 chr12 40751886 40751985 -80505545 + ID_B1 SINE B4 91 208 -16 4 895 369 0 0 0 chr12 40751986 40752027 -80505503 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 4 895 691 266 181 3 chr12 40752358 40752667 -80504863 + L1MC4 LINE L1 6595 6958 -1084 4 895 285 250 48 129 chr12 40752728 40752750 -80504780 + B1F SINE Alu 14 144 -1 4 895 379 263 8 58 chr12 40752750 40752871 -80504659 + ID_B1 SINE B4 108 222 -2 4 895 740 148 35 49 chr12 40752881 40753023 -80504507 + B1_Mus1 SINE Alu 8 147 -1 4 895 207 200 0 0 chr12 40753024 40753069 -80504461 + A-rich Low_complexity Low_complexity 1 45 0 4 895 443 326 89 30 chr12 40753072 40753467 -80504063 + L1MC4 LINE L1 6941 7358 -684 4 895 515 171 84 19 chr12 40753478 40753585 -80503945 - PB1D9 SINE Alu -1 119 6 4 895 287 263 191 45 chr12 40753704 40753903 -80503627 + L1MC4 LINE L1 7491 7718 -324 4 895 248 282 26 0 chr12 40753915 40753993 -80503537 + L1MC4 LINE L1 7963 8042 0 4 895 212 284 74 0 chr12 40755186 40755267 -80502263 - MIR SINE MIR -108 154 68 4 895 280 296 0 0 chr12 40755490 40755561 -80501969 + ID4 SINE ID 13 83 0 4 895 25 0 0 0 chr12 40755687 40755712 -80501818 + AT_rich Low_complexity Low_complexity 1 25 0 4 895 395 290 51 103 chr12 40755922 40756128 -80501402 + B3A SINE B2 13 205 -11 4 895 1277 61 0 0 chr12 40756128 40756276 -80501254 + B1_Mus1 SINE Alu 1 148 0 4 895 375 295 50 119 chr12 40756276 40756288 -80501242 + B3 SINE B2 206 216 0 4 895 278 376 15 77 chr12 40756325 40756455 -80501075 + B1F SINE Alu 3 125 -25 4 895 287 222 65 68 chr12 40757007 40757114 -80500416 + MTEa LTR MaLR 275 379 0 4 895 507 259 40 34 chr12 40757381 40757529 -80500001 + B1F SINE Alu 1 149 0 4 895 447 193 180 25 chr12 40757575 40757697 -80499833 + B1F SINE Alu 9 149 0 4 895 601 225 85 13 chr12 40757868 40758021 -80499509 - MER5A DNA MER1_type 0 189 26 4 895 809 232 72 22 chr12 40758143 40758324 -80499206 - B3A SINE B2 -4 194 5 4 895 208 315 158 18 chr12 40758911 40759076 -80498454 - MIR SINE MIR -5 257 70 4 895 189 74 0 0 chr12 40759314 40759341 -80498189 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 4 895 1122 58 7 14 chr12 40759341 40759480 -80498050 - B1_Mus1 SINE Alu -10 138 1 4 895 255 250 58 23 chr12 40760051 40760137 -80497393 - BC1_Mm scRNA scRNA -62 90 2 4 895 268 289 65 13 chr12 40760479 40760556 -80496974 + ID4 SINE ID 1 81 -2 4 895 207 0 0 0 chr12 40760803 40760826 -80496704 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 895 344 123 35 0 chr12 40760826 40760883 -80496647 - PB1D9 SINE Alu -12 108 50 4 895 231 188 0 20 chr12 40760845 40760894 -80496636 - RLTR25A LTR ERVK -540 563 516 4 896 29 70 0 0 chr12 40764562 40764619 -80492911 + GC_rich Low_complexity Low_complexity 1 57 0 4 896 588 159 19 0 chr12 40765383 40765490 -80492040 + B1_Mur1 SINE Alu 30 138 -11 4 896 489 17 0 0 chr12 40765490 40765548 -80491982 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 4 896 316 188 45 38 chr12 40765635 40765768 -80491762 + T-rich Low_complexity Low_complexity 2 135 0 4 896 690 113 185 46 chr12 40765771 40765901 -80491629 - B1_Mus1 SINE Alu 0 148 1 4 896 182 267 32 48 chr12 40767458 40767521 -80490009 + MIR SINE MIR 30 91 -171 4 896 1256 127 40 0 chr12 40767542 40767715 -80489815 + B2_Mm2 SINE B2 2 181 -14 4 896 329 132 310 26 chr12 40767781 40767897 -80489633 + B2_Mm2 SINE B2 47 195 0 4 896 201 152 0 0 chr12 40767897 40767930 -80489600 + GA-rich Low_complexity Low_complexity 1 33 0 4 896 680 133 15 91 chr12 40768444 40768576 -80488954 + B1_Mur4 SINE Alu 1 122 -28 4 896 2092 217 6 121 chr12 40769137 40769781 -80487749 + MMETn-int LTR ERVK 2578 3147 -1697 4 896 1353 164 28 32 chr12 40769787 40770085 -80487445 + ETnERV2-int LTR ERVK 6222 6429 -977 4 896 542 85 10 34 chr12 40770278 40770366 -80487164 + MMETn-int LTR ERVK 7331 7405 -1 4 896 1443 130 38 103 chr12 40770367 40770658 -80486872 + RLTR9C LTR ERVK 1 272 -121 4 896 2768 194 67 92 chr12 40770658 40771581 -80485949 + RLTR13D6 LTR ERVK 1 856 -46 4 896 816 97 0 24 chr12 40771581 40771708 -80485822 + RLTR9C LTR ERVK 286 409 0 4 896 499 293 124 43 chr12 40771890 40772261 -80485269 - MLT1J-int LTR MaLR -387 1000 600 4 896 334 309 102 39 chr12 40772542 40772670 -80484860 - MLT1J-int LTR MaLR -1114 273 138 4 896 325 0 44 0 chr12 40772769 40772814 -80484716 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 4 896 1496 233 85 16 chr12 40773279 40773667 -80483863 - MTD LTR MaLR 0 419 5 4 896 486 265 176 16 chr12 40773962 40774150 -80483380 + ID_B1 SINE B4 2 219 -5 4 896 1805 190 72 22 chr12 40774212 40774572 -80482958 + ORR1C1 LTR MaLR 1 378 0 4 896 285 75 0 0 chr12 40774830 40774870 -80482660 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 896 764 189 70 50 chr12 40775295 40775496 -80482034 + ORR1C1-int LTR MaLR 1166 1370 0 4 896 1173 218 93 124 chr12 40775496 40775874 -80481656 + ORR1C1 LTR MaLR 1 366 -8 4 896 2279 149 85 18 chr12 40775979 40776051 -80481479 + MTC LTR MaLR 1 68 -353 4 896 1385 72 72 10 chr12 40776051 40776246 -80481284 + L1Md_F2 LINE L1 6375 6581 -1 4 896 2279 149 85 18 chr12 40776246 40776563 -80480967 + MTC LTR MaLR 69 416 -5 4 896 189 0 0 0 chr12 40776893 40776914 -80480616 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 4 896 504 0 0 0 chr12 40776915 40776971 -80480559 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 896 362 282 46 137 chr12 40777792 40777989 -80479541 + MLT1D LTR MaLR 63 241 -264 4 896 416 258 121 0 chr12 40778133 40778257 -80479273 + MLT1D LTR MaLR 250 388 -117 4 896 244 308 94 6 chr12 40778352 40778512 -80479018 + Lx8 LINE L1 7298 7471 -2 4 896 1029 149 155 0 chr12 40778844 40779038 -80478492 - URR1A DNA MER1_type -2 224 1 4 896 501 300 96 35 chr12 40779059 40779256 -80478274 - MER20 DNA MER1_type -6 213 5 4 896 1277 88 16 6 chr12 40779393 40779575 -80477955 + B2_Mm2 SINE B2 2 185 -10 4 896 26601 143 70 23 chr12 40780088 40781278 -80476252 + L1_Mus3 LINE L1 464 1698 -4185 4 896 444 37 0 0 chr12 40781278 40781332 -80476198 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 4 896 26601 115 22 6 chr12 40781332 40786176 -80471354 + L1_Mus3 LINE L1 1699 6638 0 4 896 599 95 43 7 chr12 40786842 40786980 -80470550 + (TAGA)n Simple_repeat Simple_repeat 4 146 0 4 896 615 321 19 13 chr12 40788670 40788828 -80468702 + B3 SINE B2 15 173 -43 4 896 453 220 236 28 chr12 40788856 40789034 -80468496 - B3 SINE B2 0 216 2 4 896 202 193 0 34 chr12 40789050 40789109 -80468421 + GA-rich Low_complexity Low_complexity 2 58 0 4 896 249 224 0 0 chr12 40789265 40789323 -80468207 + (CGTG)n Simple_repeat Simple_repeat 1 58 0 4 896 5691 123 10 13 chr12 40790817 40791722 -80465808 + RMER12 LTR ERVK 1 902 -420 4 896 299 342 25 16 chr12 40791732 40791854 -80465676 + RMER12 LTR ERVK 1096 1218 -104 4 896 727 286 20 54 chr12 40791922 40792125 -80465405 - B3A SINE B2 -1 197 2 4 896 278 362 28 39 chr12 40792241 40792419 -80465111 - MIR SINE MIR -85 177 2 4 896 253 317 10 29 chr12 40792719 40792823 -80464707 + Lx9 LINE L1 7059 7160 -484 4 896 240 191 0 0 chr12 40792949 40792996 -80464534 + RMER21B LTR ERV1 521 567 -275 4 896 612 287 36 9 chr12 40793078 40793303 -80464227 + Lx9 LINE L1 7199 7429 -215 4 896 329 306 88 22 chr12 40794122 40794259 -80463271 + MLT1A0 LTR MaLR 214 359 -6 4 896 240 179 35 35 chr12 40794260 40794318 -80463212 + RMER15 LTR ERVL 1 58 -517 4 896 1336 212 109 22 chr12 40794343 40794772 -80462758 + RMER15 LTR ERVL 27 575 0 4 896 948 61 122 0 chr12 40794843 40794974 -80462556 + B1_Mus1 SINE Alu 2 148 0 4 896 468 0 0 0 chr12 40795051 40795103 -80462427 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 896 649 241 22 0 chr12 40796235 40796372 -80461158 + B1_Mur2 SINE Alu 2 141 -8 4 896 318 309 64 0 chr12 40796431 40796525 -80461005 + PB1D10 SINE Alu 11 110 -7 4 896 514 240 24 39 chr12 40796550 40796703 -80460827 + B3A SINE B2 25 176 -40 4 896 204 305 126 30 chr12 40797349 40797484 -80460046 - L2 LINE L2 -1207 2212 2065 4 896 357 225 0 0 chr12 40801654 40801743 -80455787 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 896 562 237 11 11 chr12 40801736 40801911 -80455619 + (TATG)n Simple_repeat Simple_repeat 4 178 0 4 896 210 373 8 16 chr12 40801992 40802120 -80455410 + CT-rich Low_complexity Low_complexity 2 128 0 4 896 1604 230 13 27 chr12 40802491 40802866 -80454664 + ORR1D1 LTR MaLR 3 372 -2 4 896 435 315 123 49 chr12 40802897 40803181 -80454349 - MLT1E2 LTR MaLR -289 338 34 4 896 488 262 0 0 chr12 40804443 40804546 -80452984 - PB1D10 SINE Alu -10 107 5 4 896 246 128 0 0 chr12 40806655 40806694 -80450836 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 896 1204 71 0 0 chr12 40806743 40806897 -80450633 + B2_Mm2 SINE B2 1 154 -41 4 896 231 88 0 0 chr12 40806897 40806931 -80450599 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 4 896 806 269 38 9 chr12 40807058 40807268 -80450262 - ID_B1 SINE B4 -7 217 2 4 896 288 0 0 0 chr12 40807316 40807348 -80450182 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 896 369 0 0 0 chr12 40807348 40807388 -80450142 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 896 189 0 0 0 chr12 40807407 40807428 -80450102 + (GA)n Simple_repeat Simple_repeat 1 21 0 4 896 344 277 12 12 chr12 40807657 40807741 -80449789 + 5S rRNA rRNA 1 84 -37 4 896 954 81 0 56 chr12 40807889 40808033 -80449497 - B1_Mus1 SINE Alu -12 136 1 4 896 638 226 14 49 chr12 40809571 40809715 -80447815 + B1_Mus2 SINE Alu 1 139 -8 4 896 900 104 0 0 chr12 40809715 40809849 -80447681 + (GGA)n Simple_repeat Simple_repeat 2 135 0 4 896 238 17 30 106 chr12 40810487 40810553 -80446977 + T-rich Low_complexity Low_complexity 5 65 0 4 896 1057 71 42 14 chr12 40810553 40810696 -80446834 - B1_Mus1 SINE Alu 0 148 2 4 896 639 189 162 6 chr12 40811442 40811602 -80445928 + ORR1D1 LTR MaLR 190 374 0 4 896 21 57 0 0 chr12 40811751 40811786 -80445744 + AT_rich Low_complexity Low_complexity 1 35 0 4 896 895 249 56 72 chr12 40812932 40813429 -80444101 + L1MA9 LINE L1 5823 6311 -1 4 896 467 310 130 29 chr12 40814140 40814416 -80443114 + LTR37A LTR ERV1 58 361 -65 5 896 1324 228 48 114 chr12 40814424 40814727 -80442803 + ORR1D1 LTR MaLR 5 281 -93 5 896 837 162 222 0 chr12 40814727 40814912 -80442618 + URR1A DNA MER1_type 1 226 0 5 896 1324 228 48 114 chr12 40814912 40815004 -80442526 + ORR1D1 LTR MaLR 282 374 0 5 896 380 288 130 45 chr12 40815210 40815410 -80442120 - MIR SINE MIR -31 231 15 5 896 806 233 94 0 chr12 40815729 40815931 -80441599 + ID_B1 SINE B4 2 222 -2 5 896 762 201 22 0 chr12 40816107 40816246 -80441284 + B1_Mur4 SINE Alu 1 142 -8 5 896 24 85 0 0 chr12 40816254 40816313 -80441217 + AT_rich Low_complexity Low_complexity 1 59 0 5 896 189 0 0 0 chr12 40816497 40816518 -80441012 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 896 341 342 48 0 chr12 40817675 40817821 -80439709 + MER3 DNA MER1_type 1 153 -56 5 896 3170 193 80 3 chr12 40818063 40818662 -80438868 + RLTR33 LTR ERVK 1 645 -33 5 896 324 200 0 48 chr12 40818762 40818825 -80438705 + MTC LTR MaLR 1 60 -361 5 896 248 288 86 12 chr12 40819115 40819196 -80438334 - PB1D9 SINE Alu -3 117 31 5 896 1035 248 5 29 chr12 40819379 40819587 -80437943 - ID_B1 SINE B4 -13 211 9 5 896 450 0 0 0 chr12 40819602 40819652 -80437878 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 896 378 0 0 0 chr12 40819652 40819693 -80437837 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 896 998 78 0 0 chr12 40819882 40820011 -80437519 - B1_Mus1 SINE Alu 0 148 20 5 896 423 0 0 0 chr12 40820834 40820881 -80436649 + (TGG)n Simple_repeat Simple_repeat 1 47 0 5 896 711 124 146 8 chr12 40820881 40821003 -80436527 - B1_Mur4 SINE Alu -9 141 1 5 896 288 279 74 25 chr12 40821800 40821881 -80435649 + B1F SINE Alu 2 86 -63 5 896 23 78 0 0 chr12 40822553 40822604 -80434926 + AT_rich Low_complexity Low_complexity 1 51 0 5 896 30 27 0 0 chr12 40823090 40823127 -80434403 + AT_rich Low_complexity Low_complexity 1 37 0 5 896 398 266 54 39 chr12 40824186 40824315 -80433215 + B1F SINE Alu 1 131 -18 5 896 183 228 98 37 chr12 40825409 40825491 -80432039 + L3 LINE CR1 2225 2311 -2178 5 896 506 232 32 14 chr12 40825564 40825694 -80431836 + B3A SINE B2 1 126 -69 5 896 2070 160 11 37 chr12 40827018 40827400 -80430130 + ORR1D1 LTR MaLR 3 374 0 5 896 318 171 34 0 chr12 40828579 40828667 -80428863 - Charlie4a DNA MER1_type -58 450 360 5 896 510 276 9 0 chr12 40828695 40828811 -80428719 - ID_B1 SINE B4 0 224 108 5 896 226 343 14 54 chr12 40828704 40828852 -80428678 + YREP_Mm Unknown Unknown 186 327 -1485 5 896 642 254 0 14 chr12 40828880 40829024 -80428506 + B1F2 SINE Alu 6 147 -2 5 896 330 261 218 21 chr12 40829055 40829299 -80428231 - Charlie4a DNA MER1_type -189 319 28 5 896 2109 212 32 15 chr12 40829857 40830269 -80427261 - MTD LTR MaLR 0 419 1 5 896 1096 147 6 12 chr12 40830451 40830623 -80426907 + B2_Mm2 SINE B2 2 172 -23 5 896 754 218 90 15 chr12 40830677 40830877 -80426653 - B3 SINE B2 -1 215 1 5 896 670 125 14 0 chr12 40831230 40831374 -80426156 + (TC)n Simple_repeat Simple_repeat 2 147 0 5 896 243 0 0 0 chr12 40831379 40831406 -80426124 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 896 438 20 0 0 chr12 40831423 40831474 -80426056 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 896 6915 67 29 1 chr12 40831778 40833321 -80424209 + L1_Mus1 LINE L1 4983 6567 0 5 896 211 143 24 0 chr12 40833325 40833367 -80424163 + A-rich Low_complexity Low_complexity 2 44 0 5 896 1316 228 86 53 chr12 40833387 40833804 -80423726 + Lx8 LINE L1 6895 7325 -148 5 896 23 54 0 0 chr12 40834167 40834204 -80423326 + AT_rich Low_complexity Low_complexity 1 37 0 5 896 306 125 0 0 chr12 40834271 40834319 -80423211 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 896 331 167 47 12 chr12 40834726 40834811 -80422719 - Lx9 LINE L1 -3 7641 7554 5 896 354 138 0 0 chr12 40836785 40836843 -80420687 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 896 26 0 0 0 chr12 40837008 40837034 -80420496 + AT_rich Low_complexity Low_complexity 1 26 0 5 896 881 59 0 0 chr12 40837066 40837185 -80420345 - L1_Mus2 LINE L1 -4 6562 6444 5 896 3950 68 0 0 chr12 40837336 40837878 -80419652 - L1_Mm LINE L1 -2702 3181 2640 5 896 3256 37 0 0 chr12 40837876 40838278 -80419252 + L1Md_F2 LINE L1 5185 5586 -297 5 896 8182 44 1 3 chr12 40838278 40839275 -80418255 + L1Md_F2 LINE L1 5587 6581 -1 5 896 22 35 0 0 chr12 40841034 40841063 -80416467 + AT_rich Low_complexity Low_complexity 1 29 0 5 896 270 0 0 0 chr12 40841299 40841329 -80416201 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 896 595 263 29 7 chr12 40842025 40842163 -80415367 + ID_B1 SINE B4 77 217 -7 5 896 282 303 0 13 chr12 40842228 40842305 -80415225 + B1F SINE Alu 67 142 -7 5 896 486 0 0 0 chr12 40842333 40842387 -80415143 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 896 378 0 0 0 chr12 40842498 40842540 -80414990 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 896 26 30 0 0 chr12 40843181 40843214 -80414316 + AT_rich Low_complexity Low_complexity 1 33 0 5 896 423 319 64 14 chr12 40844011 40844151 -80413379 - ID_B1 SINE B4 0 224 78 5 896 435 320 64 0 chr12 40844960 40845085 -80412445 + B3A SINE B2 62 194 -4 5 896 218 89 0 43 chr12 40845334 40845381 -80412149 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 5 896 1145 82 0 0 chr12 40845394 40845540 -80411990 - B1_Mus2 SINE Alu 0 147 2 5 896 211 295 51 0 chr12 40845836 40845914 -80411616 - MIRm SINE MIR -139 137 56 5 896 1575 120 8 37 chr12 40846138 40846406 -80411124 - Lx LINE L1 -14 6640 6381 5 896 4824 161 89 121 chr12 40846586 40846986 -80410544 + Lx6 LINE L1 4509 4981 -899 5 896 2125 52 11 0 chr12 40846986 40847257 -80410273 + L1Md_A LINE L1 6309 6582 0 5 896 531 191 218 0 chr12 40847257 40847367 -80410163 + RLTR14 LTR ERV1 249 382 0 5 896 6945 190 75 66 chr12 40847367 40849623 -80407907 + Lx6 LINE L1 4982 7291 -169 5 896 24 32 0 0 chr12 40851494 40851525 -80406005 + AT_rich Low_complexity Low_complexity 1 31 0 5 896 3193 68 0 2 chr12 40851976 40852377 -80405153 + MTB LTR MaLR 1 400 0 5 896 1313 128 0 17 chr12 40853110 40853348 -80404182 + L1Md_F2 LINE L1 6348 6581 -1 5 896 377 284 0 57 chr12 40853863 40853986 -80403544 - PB1D10 SINE Alu -1 116 1 5 896 415 311 10 0 chr12 40854301 40854404 -80403126 + ID_B1 SINE B4 1 104 -120 5 896 34 24 0 0 chr12 40854707 40854748 -80402782 + AT_rich Low_complexity Low_complexity 1 41 0 5 896 332 147 0 42 chr12 40854841 40854912 -80402618 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 896 252 0 0 0 chr12 40854911 40854939 -80402591 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 896 256 257 146 46 chr12 40854939 40855090 -80402440 - Lx9 LINE L1 -139 7505 7340 5 896 585 0 0 0 chr12 40855129 40855194 -80402336 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 5 896 851 224 18 0 chr12 40856123 40856288 -80401242 - B3A SINE B2 -30 168 1 5 896 233 352 11 0 chr12 40857530 40857621 -80399909 - L1MD2 LINE L1 -231 6128 6037 5 896 542 287 49 42 chr12 40857675 40857817 -80399713 - RSINE1 SINE B4 -20 145 3 5 896 214 318 53 53 chr12 40858952 40859065 -80398465 + B1F SINE Alu 25 137 -12 5 896 29 47 0 0 chr12 40860921 40860964 -80396566 + AT_rich Low_complexity Low_complexity 1 43 0 5 896 1679 21 0 0 chr12 40861484 40861675 -80395855 - B2_Mm1t SINE B2 -2 191 1 5 896 243 280 115 39 chr12 40862004 40862108 -80395422 + PB1D9 SINE Alu 7 118 -2 5 896 693 226 136 53 chr12 40862330 40862536 -80394994 - ID_B1 SINE B4 0 224 2 5 896 567 85 0 0 chr12 40862639 40862721 -80394809 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 896 338 77 0 58 chr12 40862948 40863017 -80394513 + L1Md_F3 LINE L1 6520 6584 0 5 896 261 209 42 56 chr12 40863293 40863364 -80394166 + MIR SINE MIR 86 155 -107 5 896 1680 176 98 17 chr12 40863375 40863721 -80393809 - ORR1D1 LTR MaLR 0 374 1 5 896 563 165 0 9 chr12 40863917 40864027 -80393503 + C-rich Low_complexity Low_complexity 4 112 0 5 896 329 223 29 19 chr12 40864037 40864142 -80393388 + (TCTCTG)n Simple_repeat Simple_repeat 1 106 0 5 896 1073 230 5 0 chr12 40864681 40864877 -80392653 + B3 SINE B2 15 211 -5 5 896 277 244 0 22 chr12 40864948 40865040 -80392490 + T-rich Low_complexity Low_complexity 5 94 0 5 896 712 222 14 0 chr12 40865041 40865185 -80392345 - B1_Mur1 SINE Alu 0 149 4 5 896 625 284 23 0 chr12 40865375 40865551 -80391979 + B3A SINE B2 1 180 -18 5 896 243 0 0 0 chr12 40865560 40865587 -80391943 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 896 45 0 0 0 chr12 40866030 40866075 -80391455 + AT_rich Low_complexity Low_complexity 1 45 0 5 896 471 243 25 89 chr12 40866402 40866560 -80390970 - RSINE1 SINE B4 -15 150 3 5 896 1248 258 33 23 chr12 40867769 40868071 -80389459 + MTE2b LTR MaLR 21 325 -54 5 896 582 252 38 134 chr12 40868087 40868173 -80389357 - B3 SINE B2 0 216 143 5 896 2774 82 0 0 chr12 40868173 40868541 -80388989 + L1_Mus1 LINE L1 6199 6566 -1 5 896 582 252 38 134 chr12 40868541 40868692 -80388838 - B3 SINE B2 -74 142 2 5 896 346 317 148 9 chr12 40869339 40869549 -80387981 + MIR SINE MIR 14 252 -10 5 896 437 191 90 0 chr12 40869938 40870027 -80387503 - PB1D10 SINE Alu -4 113 17 5 896 437 269 8 87 chr12 40870067 40870193 -80387337 - ID_B1 SINE B4 0 224 109 5 896 313 256 70 126 chr12 40870193 40870210 -80387320 - B1F SINE Alu 0 149 15 5 896 401 69 0 0 chr12 40870507 40870565 -80386965 + L1Md_F2 LINE L1 6513 6570 -12 6 896 258 32 0 0 chr12 40870575 40870606 -80386924 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 896 674 165 82 8 chr12 40871359 40871481 -80386049 + B1F2 SINE Alu 17 147 -2 6 896 3193 144 17 28 chr12 40871736 40872277 -80385253 + RMER2 LTR ERV1 1 535 -32 6 896 578 278 76 20 chr12 40872648 40872846 -80384684 + ID_B1 SINE B4 4 212 -12 6 896 456 289 0 34 chr12 40873277 40873424 -80384106 + ID_B1 SINE B4 81 222 -2 6 896 264 258 16 0 chr12 40873436 40873498 -80384032 + ID4_ SINE ID 21 83 0 6 896 333 294 48 10 chr12 40873617 40873720 -80383810 + PB1D10 SINE Alu 11 117 0 6 896 230 73 24 0 chr12 40873723 40873764 -80383766 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 6 896 21 0 0 0 chr12 40873849 40873870 -80383660 + AT_rich Low_complexity Low_complexity 1 21 0 6 896 1060 212 142 12 chr12 40874388 40874727 -80382803 - Lx9 LINE L1 0 7644 7262 6 896 570 172 73 8 chr12 40875134 40875257 -80382273 + RMER5 LTR ERV1 1 131 -403 6 896 797 272 18 35 chr12 40875270 40875556 -80381974 - Lx8 LINE L1 -822 6651 6371 6 896 202 192 66 19 chr12 40875973 40876079 -80381451 + (TA)n Simple_repeat Simple_repeat 1 111 0 6 896 272 340 230 23 chr12 40877211 40877732 -80379798 - L2 LINE L2 -567 2852 2224 6 896 1236 28 0 0 chr12 40877864 40878007 -80379523 + B1_Mus2 SINE Alu 1 143 -4 6 896 1193 261 80 30 chr12 40879620 40879701 -80377829 - RMER5 LTR ERV1 -70 464 370 6 896 340 37 0 36 chr12 40879701 40879757 -80377773 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 896 1193 261 80 30 chr12 40879757 40880113 -80377417 - RMER5 LTR ERV1 -165 369 5 6 896 1759 208 61 15 chr12 40880609 40881005 -80376525 - MTD LTR MaLR -5 414 1 6 896 823 251 51 67 chr12 40882048 40882461 -80375069 + RMER16 LTR ERVK 1 533 0 6 896 361 274 101 29 chr12 40882503 40882642 -80374888 - B1F1 SINE Alu 0 149 1 6 896 787 159 8 8 chr12 40882858 40882991 -80374539 - B1_Mur1 SINE Alu 0 149 17 6 896 414 250 85 92 chr12 40882865 40883006 -80374524 - B4 SINE B4 -72 220 81 6 896 356 349 68 57 chr12 40883010 40883282 -80374248 - L1ME3 LINE L1 -296 5877 5603 6 896 615 62 0 0 chr12 40883282 40883362 -80374168 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 6 896 356 358 82 50 chr12 40883362 40883586 -80373944 - L1ME3 LINE L1 -559 5603 5363 6 896 231 175 70 0 chr12 40884035 40884092 -80373438 - MIR SINE MIR -120 142 82 6 896 314 271 104 44 chr12 40884358 40884493 -80373037 - B1F SINE Alu -5 144 2 6 896 511 308 53 6 chr12 40884698 40884748 -80372782 - RMER5 LTR ERV1 -112 422 370 6 896 180 0 0 0 chr12 40884748 40884768 -80372762 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 6 896 511 308 53 6 chr12 40884768 40884887 -80372643 - RMER5 LTR ERV1 -165 369 247 6 896 556 176 78 0 chr12 40885095 40885197 -80372333 + B2_Mm2 SINE B2 2 111 -84 6 896 201 139 0 0 chr12 40885273 40885316 -80372214 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 6 896 1004 182 84 0 chr12 40885318 40885521 -80372009 + ORR1C1 LTR MaLR 159 378 0 6 896 281 140 18 0 chr12 40887667 40887724 -80369806 + GA-rich Low_complexity Low_complexity 1 58 0 6 896 1530 17 0 0 chr12 40887724 40887901 -80369629 + (GAGAA)n Simple_repeat Simple_repeat 2 178 0 6 896 462 279 69 28 chr12 40888257 40888401 -80369129 + B3A SINE B2 28 177 -21 6 896 541 200 82 82 chr12 40888422 40888569 -80368961 + B1_Mur3 SINE Alu 3 149 0 6 896 271 317 57 16 chr12 40889422 40889544 -80367986 + MLT1A1 LTR MaLR 269 395 -13 6 896 345 225 154 24 chr12 40889678 40889801 -80367729 + B1F SINE Alu 3 141 -8 6 896 713 341 59 15 chr12 40889814 40890085 -80367445 + B4 SINE B4 4 286 -6 6 896 371 236 43 33 chr12 40890288 40890380 -80367150 + RSINE1 SINE B4 43 135 -30 6 896 690 239 8 0 chr12 40890482 40890612 -80366918 + B1_Mur2 SINE Alu 2 132 -17 6 896 427 339 85 0 chr12 40890612 40890742 -80366788 + ID_B1 SINE B4 81 221 -3 6 896 2069 174 10 58 chr12 40890904 40891300 -80366230 + Lx9 LINE L1 6695 7071 -573 6 896 238 179 0 111 chr12 40891583 40891646 -80365884 + Lx7 LINE L1 7172 7227 -469 6 896 22 56 0 0 chr12 40891951 40891987 -80365543 + AT_rich Low_complexity Low_complexity 1 36 0 6 896 198 0 0 0 chr12 40892645 40892667 -80364863 + (T)n Simple_repeat Simple_repeat 1 22 0 6 896 481 254 161 0 chr12 40893578 40893708 -80363822 + B3 SINE B2 1 151 -65 6 896 498 125 0 0 chr12 40893709 40893789 -80363741 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 896 298 262 16 0 chr12 40893866 40893927 -80363603 - B3A SINE B2 -136 62 1 6 896 276 30 0 0 chr12 40893945 40893978 -80363552 + (ATGGTG)n Simple_repeat Simple_repeat 5 37 0 6 896 688 205 47 0 chr12 40894278 40894405 -80363125 + B1_Mur2 SINE Alu 6 138 -11 6 897 608 302 48 66 chr12 40894897 40895192 -80362338 - MTE2a LTR MaLR -96 323 25 6 897 503 250 39 24 chr12 40895271 40895398 -80362132 - B1F SINE Alu -20 129 1 6 897 296 300 10 0 chr12 40895587 40895687 -80361843 + L1M2 LINE L1 3927 4027 -2116 6 897 637 234 23 0 chr12 40895712 40895840 -80361690 + RSINE1 SINE B4 3 133 -32 6 897 22 35 0 0 chr12 40895914 40895943 -80361587 + AT_rich Low_complexity Low_complexity 1 29 0 6 897 259 352 0 23 chr12 40896007 40896138 -80361392 + L1M2 LINE L1 5661 5788 -509 6 897 198 103 0 0 chr12 40896159 40896188 -80361342 + (CATA)n Simple_repeat Simple_repeat 3 31 0 6 897 216 122 0 0 chr12 40896188 40896228 -80361302 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 897 229 219 27 0 chr12 40896231 40896304 -80361226 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 897 243 246 0 42 chr12 40896319 40896391 -80361139 + L1M2 LINE L1 5786 5854 -446 6 897 1197 120 16 37 chr12 40896682 40896845 -80360685 + RMER1C Other Other 1040 1201 -141 6 897 1203 107 0 0 chr12 40896845 40897023 -80360507 + (TTC)n Simple_repeat Simple_repeat 3 180 0 6 897 1197 120 16 37 chr12 40897023 40897049 -80360481 + RMER1C Other Other 1202 1225 -117 6 897 765 168 36 7 chr12 40897071 40897209 -80360321 + RMER1C Other Other 1201 1342 0 6 897 756 319 62 5 chr12 40897241 40897449 -80360081 + B4 SINE B4 69 288 -4 6 897 201 250 0 62 chr12 40897464 40897528 -80360002 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 6 897 375 244 67 0 chr12 40897642 40897732 -80359798 + B4A SINE B4 43 138 -154 6 897 1310 229 70 65 chr12 40898257 40898626 -80358904 + ORR1C2 LTR MaLR 5 375 -9 6 897 5432 102 41 94 chr12 40898669 40899626 -80357904 - RMER17A2 LTR ERVK 0 906 1 6 897 1105 274 50 0 chr12 40899821 40900098 -80357432 + B4 SINE B4 2 292 0 6 897 1025 210 45 0 chr12 40900289 40900489 -80357041 - B3 SINE B2 -6 210 2 6 897 21 36 0 0 chr12 40901349 40901377 -80356153 + AT_rich Low_complexity Low_complexity 1 28 0 6 897 224 200 0 0 chr12 40901522 40901567 -80355963 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 897 771 123 0 0 chr12 40901585 40901707 -80355823 + (TC)n Simple_repeat Simple_repeat 2 123 0 6 897 286 269 20 88 chr12 40901733 40901835 -80355695 - RSINE1 SINE B4 -69 96 2 6 897 794 160 50 65 chr12 40901983 40902184 -80355346 + RMER3D-int LTR ERVK 1936 2133 -709 6 897 429 144 35 46 chr12 40902191 40902278 -80355252 + B4 SINE B4 1 86 -206 6 897 21 0 0 0 chr12 40902757 40902778 -80354752 + AT_rich Low_complexity Low_complexity 1 21 0 6 897 216 0 0 0 chr12 40902948 40902972 -80354558 + (T)n Simple_repeat Simple_repeat 1 24 0 6 897 21 0 0 0 chr12 40903014 40903035 -80354495 + AT_rich Low_complexity Low_complexity 1 21 0 6 897 404 295 27 0 chr12 40904229 40904341 -80353189 - PB1D10 SINE Alu -1 116 2 6 897 203 269 209 9 chr12 40904502 40904607 -80352923 + MIR SINE MIR 38 163 -99 6 897 324 229 93 10 chr12 40904622 40904719 -80352811 + ID_B1 SINE B4 118 222 -2 6 897 186 182 0 0 chr12 40905340 40905361 -80352169 + G-rich Low_complexity Low_complexity 2 22 0 6 897 944 129 23 0 chr12 40905361 40905493 -80352037 + B1_Mur4 SINE Alu 1 135 -15 6 897 186 182 0 0 chr12 40905493 40905515 -80352015 + G-rich Low_complexity Low_complexity 23 44 0 6 897 328 227 90 11 chr12 40905516 40905605 -80351925 + B3 SINE B2 7 102 -114 6 897 515 249 141 35 chr12 40905652 40905898 -80351632 + ORR1D2 LTR MaLR 47 370 0 6 897 363 246 98 45 chr12 40905898 40906028 -80351502 + RMER15 LTR ERVL 425 561 -14 6 897 427 243 9 43 chr12 40906183 40906299 -80351231 + PB1D9 SINE Alu 1 112 -8 6 897 2399 109 182 0 chr12 40908083 40908485 -80349045 + IAPLTR2_Mm LTR ERVK 1 475 0 6 897 1071 113 25 80 chr12 40908504 40908705 -80348825 + IAPEz-int LTR ERVK 4 193 -6288 6 897 228 327 0 0 chr12 40908705 40908760 -80348770 + RLTR27 LTR ERVK 221 275 -34 6 897 291 81 0 0 chr12 40908760 40908797 -80348733 + IAPEz-int LTR ERVK 145 181 -7400 6 897 231 273 0 0 chr12 40908797 40908841 -80348689 + RLTR27 LTR ERVK 232 275 -34 6 897 3640 79 20 39 chr12 40908841 40909494 -80348036 + IAPEz-int LTR ERVK 168 662 -5819 6 897 2175 72 7 0 chr12 40909494 40909770 -80347760 + IAPEz-int LTR ERVK 1359 1636 -4845 6 897 6349 33 12 0 chr12 40909769 40910506 -80347024 + IAPEz-int LTR ERVK 5736 6481 0 6 897 2438 104 182 0 chr12 40910506 40910908 -80346622 + IAPLTR2_Mm LTR ERVK 1 475 0 6 897 538 250 40 8 chr12 40911476 40911601 -80345929 - B1F SINE Alu -11 138 10 6 897 519 60 0 0 chr12 40911809 40911876 -80345654 + (CATA)n Simple_repeat Simple_repeat 4 70 0 6 897 481 296 74 27 chr12 40912526 40912675 -80344855 + RSINE1 SINE B4 2 157 -8 6 897 913 218 53 29 chr12 40912811 40912946 -80344584 - B3 SINE B2 -1 215 70 6 897 3661 35 0 0 chr12 40912946 40913342 -80344188 - MTA_Mm LTR MaLR 0 396 1 6 897 9902 25 4 2 chr12 40913342 40914438 -80343092 - MTA_Mm-int LTR MaLR 0 1098 1 6 897 3661 35 0 0 chr12 40914438 40914834 -80342696 - MTA_Mm LTR MaLR 0 396 1 6 897 913 218 53 29 chr12 40914834 40914904 -80342626 - B3 SINE B2 -147 69 5 6 897 963 259 82 15 chr12 40915094 40915364 -80342166 + B4A SINE B4 5 292 0 6 897 873 238 10 45 chr12 40915462 40915660 -80341870 + B3A SINE B2 1 191 -7 6 897 1206 89 0 0 chr12 40915877 40916023 -80341507 + B1_Mm SINE Alu 2 147 0 6 897 204 40 0 0 chr12 40916023 40916048 -80341482 + (A)n Simple_repeat Simple_repeat 1 25 0 6 897 716 218 61 0 chr12 40916060 40916207 -80341323 + B3A SINE B2 2 157 -41 6 897 24824 139 19 19 chr12 40916337 40920081 -80337449 + L1VL4 LINE L1 1091 4840 -1043 7 897 1412 80 0 6 chr12 40920081 40920258 -80337272 + B2_Mm2 SINE B2 1 176 -19 7 897 24824 144 20 17 chr12 40920258 40920974 -80336556 + L1VL4 LINE L1 4841 5554 -329 7 897 8058 87 0 63 chr12 40920975 40921799 -80335731 + Lx LINE L1 4763 5586 -297 7 897 8999 30 1 1 chr12 40921799 40922790 -80334740 + L1Md_F2 LINE L1 5587 6577 -5 7 897 8058 79 26 21 chr12 40922790 40923796 -80333734 + Lx LINE L1 5587 6518 -136 7 897 189 0 0 0 chr12 40923796 40923817 -80333713 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 7 897 7571 79 29 18 chr12 40923817 40923934 -80333596 + Lx LINE L1 6519 6645 -9 7 897 504 0 0 0 chr12 40924493 40924549 -80332981 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 897 712 74 19 0 chr12 40924549 40924657 -80332873 + (GGA)n Simple_repeat Simple_repeat 2 111 0 7 897 359 333 60 13 chr12 40924748 40924897 -80332633 + RSINE1 SINE B4 10 165 0 7 897 255 31 0 0 chr12 40927692 40927724 -80329806 + (A)n Simple_repeat Simple_repeat 1 32 0 7 897 207 0 0 0 chr12 40930475 40930498 -80327032 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 897 214 395 25 0 chr12 40931480 40931561 -80325969 + PB1D10 SINE Alu 1 83 -34 7 897 452 299 138 67 chr12 40932156 40932410 -80325120 - B4 SINE B4 -20 272 1 7 897 1280 68 0 0 chr12 40932680 40932828 -80324702 - B1_Mus1 SINE Alu 0 148 1 7 897 217 176 39 0 chr12 40933349 40933400 -80324130 - AmnSINE1 SINE SINE -483 92 40 7 897 492 283 132 30 chr12 40934640 40934837 -80322693 + MER20 DNA MER1_type 1 217 -2 7 897 1337 98 38 0 chr12 40935264 40935448 -80322082 + B2_Mm2 SINE B2 3 193 -2 7 897 297 246 156 21 chr12 40935996 40936137 -80321393 - MIR SINE MIR -80 182 23 7 897 24 32 0 0 chr12 40936340 40936371 -80321159 + AT_rich Low_complexity Low_complexity 1 31 0 7 897 1198 95 0 0 chr12 40936628 40936775 -80320755 + B1_Mm SINE Alu 1 147 0 7 897 414 191 314 62 chr12 40937515 40937727 -80319803 + Lx9 LINE L1 7273 7537 -107 7 897 350 241 50 67 chr12 40937727 40937847 -80319683 - PB1D9 SINE Alu -2 118 1 7 897 414 195 179 105 chr12 40937847 40937945 -80319585 + Lx9 LINE L1 7538 7644 0 7 897 1009 195 70 0 chr12 40938082 40938282 -80319248 - B3 SINE B2 0 216 3 7 897 946 213 5 75 chr12 40939088 40939301 -80318229 + B3A SINE B2 1 198 0 7 897 819 188 79 11 chr12 40939319 40939497 -80318033 + B3 SINE B2 27 216 0 7 897 369 220 223 25 chr12 40941230 40941351 -80316179 - B1_Mur1 SINE Alu -3 146 2 7 897 1136 75 0 20 chr12 40941472 40941622 -80315908 + B1_Mus2 SINE Alu 1 147 0 7 897 257 328 16 0 chr12 40942037 40942101 -80315429 - RSINE1 SINE B4 -21 144 80 7 897 234 372 41 16 chr12 40942156 40942279 -80315251 - B4A SINE B4 -152 140 15 7 897 282 247 21 40 chr12 40942284 40942377 -80315153 - B4 SINE B4 -171 121 31 7 897 236 291 6 50 chr12 40943209 40943312 -80314218 - AluG_3 SINE Alu -89 222 19 7 897 1224 48 0 0 chr12 40944142 40944289 -80313241 - B1_Mus2 SINE Alu 0 147 1 7 897 410 277 7 55 chr12 40944671 40944816 -80312714 - B1F SINE Alu -8 141 4 7 897 1080 101 0 0 chr12 40944904 40945052 -80312478 + B1_Mus1 SINE Alu 1 148 0 7 897 186 43 0 0 chr12 40945056 40945079 -80312451 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7 897 571 196 55 55 chr12 40945276 40945422 -80312108 + B1_Mur1 SINE Alu 4 149 0 7 897 293 222 13 40 chr12 40946401 40946476 -80311054 - B1F SINE Alu -51 98 26 7 897 21 0 0 0 chr12 40946556 40946577 -80310953 + AT_rich Low_complexity Low_complexity 1 21 0 7 897 284 303 193 22 chr12 40946960 40947095 -80310435 + RSINE1 SINE B4 4 161 -4 7 897 348 254 94 8 chr12 40947284 40947411 -80310119 + B1F SINE Alu 12 149 0 7 897 242 204 19 0 chr12 40949455 40949509 -80308021 + (CCG)n Simple_repeat Simple_repeat 3 57 0 7 897 21 0 0 0 chr12 40951810 40951831 -80305699 + AT_rich Low_complexity Low_complexity 1 21 0 7 897 375 23 0 0 chr12 40952192 40952236 -80305294 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 897 1026 67 149 57 chr12 40953078 40953253 -80304277 - B2_Mm2 SINE B2 -3 192 2 7 897 592 239 124 11 chr12 40953278 40953307 -80304223 - B3A SINE B2 0 198 169 7 897 297 0 0 0 chr12 40953307 40953340 -80304190 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 897 592 239 124 11 chr12 40953340 40953488 -80304042 - B3A SINE B2 -30 168 1 7 897 829 293 13 59 chr12 40954545 40954850 -80302680 + B4 SINE B4 2 292 0 7 897 219 324 9 28 chr12 40954880 40954988 -80302542 - MIRb SINE MIR -70 198 93 7 897 846 153 27 34 chr12 40956023 40956172 -80301358 + B1_Mus1 SINE Alu 1 148 0 7 897 198 71 0 0 chr12 40956174 40956202 -80301328 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 897 937 171 116 33 chr12 40957474 40957716 -80299814 - MTD LTR MaLR -14 405 144 7 897 1936 59 267 0 chr12 40959295 40959568 -80297962 + ORR1A1 LTR MaLR 1 346 0 7 897 1372 190 14 165 chr12 40959996 40960372 -80297158 + ORR1C1 LTR MaLR 9 323 -55 7 897 1204 68 0 0 chr12 40960372 40960520 -80297010 - B1_Mus1 SINE Alu 0 148 1 7 897 1372 190 14 165 chr12 40960520 40960579 -80296951 + ORR1C1 LTR MaLR 324 378 0 7 897 1102 263 45 157 chr12 40960764 40961234 -80296296 - MTD LTR MaLR 0 419 3 7 897 1021 173 200 37 chr12 40961322 40961592 -80295938 + ORR1C1 LTR MaLR 1 314 -64 7 897 1760 222 35 56 chr12 40961678 40962036 -80295494 + RMER19C LTR ERVK 115 485 -126 7 897 1378 96 16 0 chr12 40962036 40962224 -80295306 + B2_Mm2 SINE B2 2 192 -3 7 897 1760 221 35 56 chr12 40962224 40962360 -80295170 + RMER19C LTR ERVK 486 611 0 7 897 360 0 0 0 chr12 40962826 40962866 -80294664 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 897 1828 169 79 11 chr12 40963823 40964177 -80293353 + ORR1C1 LTR MaLR 1 378 0 7 897 385 375 6 11 chr12 40964877 40965055 -80292475 + MIRb SINE MIR 20 196 -72 7 897 234 298 83 0 chr12 40965178 40965262 -80292268 + L2a LINE L2 3317 3407 -19 7 897 288 0 0 0 chr12 40965348 40965380 -80292150 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 897 843 245 112 21 chr12 40965385 40965627 -80291903 - B4 SINE B4 -28 264 1 7 897 394 276 126 40 chr12 40965660 40965811 -80291719 - B3A SINE B2 -13 203 40 7 897 318 234 52 21 chr12 40966340 40966436 -80291094 + L1MA6 LINE L1 6202 6300 0 7 897 242 261 68 17 chr12 40967265 40967382 -80290148 - Lx8 LINE L1 -1 7472 7350 7 897 354 45 0 0 chr12 40967397 40967441 -80290089 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 897 539 29 14 0 chr12 40967674 40967743 -80289787 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 897 344 302 102 8 chr12 40968133 40968260 -80289270 - Lx8 LINE L1 -144 7329 7191 7 897 21 36 0 0 chr12 40968546 40968574 -80288956 + AT_rich Low_complexity Low_complexity 1 28 0 7 897 432 0 0 0 chr12 40968937 40968985 -80288545 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 897 497 296 0 36 chr12 40969071 40969208 -80288322 - ID_B1 SINE B4 -11 213 82 7 897 518 306 83 75 chr12 40970324 40970684 -80286846 - MTEa LTR MaLR -7 372 10 7 897 257 272 37 0 chr12 40971728 40971809 -80285721 + L2c LINE L2 3303 3386 -1 7 897 324 0 0 0 chr12 40971937 40971973 -80285557 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 7 897 3300 100 44 46 chr12 40972396 40972921 -80284609 + RLTR28 LTR ERVL 1 524 0 7 897 22 0 0 0 chr12 40973089 40973111 -80284419 + AT_rich Low_complexity Low_complexity 1 22 0 7 897 268 259 78 39 chr12 40974329 40974482 -80283048 + MIRb SINE MIR 109 267 -1 7 897 351 327 71 26 chr12 40976424 40976578 -80280952 + RSINE1 SINE B4 3 163 -2 7 897 180 368 63 0 chr12 40977287 40977382 -80280148 - MIRm SINE MIR -3 273 173 7 897 25 31 0 0 chr12 40977649 40977681 -80279849 + AT_rich Low_complexity Low_complexity 1 32 0 7 897 4722 67 30 3 chr12 40977688 40978315 -80279215 - L1_Mus3 LINE L1 -6 6632 5989 7 897 69 0 0 0 chr12 40978337 40978406 -80279124 + AT_rich Low_complexity Low_complexity 1 69 0 7 897 1168 260 144 0 chr12 40978742 40979027 -80278503 + ORR1D2 LTR MaLR 10 335 -35 7 897 234 0 0 0 chr12 40979027 40979053 -80278477 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 897 1168 260 144 0 chr12 40979053 40979073 -80278457 + ORR1D2 LTR MaLR 336 359 -11 7 897 238 277 0 0 chr12 40979073 40979120 -80278410 + PB1D9 SINE Alu 1 47 -73 7 897 1212 47 0 13 chr12 40979359 40979499 -80278031 + B1_Mus1 SINE Alu 1 140 -8 7 897 234 0 0 0 chr12 40979499 40979525 -80278005 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 897 21 0 0 0 chr12 40979546 40979567 -80277963 + AT_rich Low_complexity Low_complexity 1 21 0 7 897 581 209 96 44 chr12 40979619 40979754 -80277776 - B1_Mus2 SINE Alu -5 142 1 7 897 221 351 79 0 chr12 40979990 40980155 -80277375 + L2 LINE L2 1269 1446 -1973 7 897 300 301 71 109 chr12 40980362 40980426 -80277104 - MER2 DNA MER2_type -1 344 297 7 897 2221 92 0 9 chr12 40980426 40980746 -80276784 - Lx2A1 LINE L1 0 7008 6692 7 897 300 301 71 109 chr12 40980746 40980864 -80276666 - MER2 DNA MER2_type -49 296 169 7 897 1417 65 5 32 chr12 40981885 40982075 -80275455 - B2_Mm1t SINE B2 -8 185 1 7 897 270 296 14 0 chr12 40982708 40982779 -80274751 - ID4_ SINE ID -10 73 2 7 897 683 126 53 26 chr12 40983347 40983461 -80274069 - Lx3C LINE L1 -394 6582 6466 7 897 891 94 0 0 chr12 40983465 40983592 -80273938 + (TTC)n Simple_repeat Simple_repeat 2 128 0 7 897 576 50 0 12 chr12 40983605 40983686 -80273844 - B1_Mus2 SINE Alu 0 147 68 7 897 271 258 20 51 chr12 40983606 40983704 -80273826 - ID_B1 SINE B4 0 224 130 7 897 896 240 141 13 chr12 40985343 40985593 -80271937 + B4A SINE B4 1 280 -12 7 897 689 293 5 19 chr12 40986044 40986253 -80271277 - MTE2b-int LTR MaLR -1372 208 3 7 897 1072 285 80 14 chr12 40986260 40986609 -80270921 - MTE2b LTR MaLR -7 372 1 7 897 855 154 15 0 chr12 40988341 40988477 -80269053 + B1_Mus1 SINE Alu 3 140 -8 8 897 198 0 0 0 chr12 40988477 40988499 -80269031 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 897 227 346 46 8 chr12 40988879 40989010 -80268520 - L1MB3 LINE L1 -8 6163 6028 8 897 540 279 47 13 chr12 40989106 40989255 -80268275 + RSINE1 SINE B4 6 159 -6 8 897 374 202 3 100 chr12 40989255 40989381 -80268149 - L1MB3 LINE L1 -249 5940 5786 8 897 328 235 28 101 chr12 40990922 40991031 -80266499 + B3A SINE B2 1 101 -97 8 897 932 28 49 0 chr12 40991124 40991268 -80266262 + (CA)n Simple_repeat Simple_repeat 2 152 0 8 897 1071 106 6 12 chr12 40991537 40991695 -80265835 + B2_Mm2 SINE B2 1 158 -37 8 897 315 0 0 0 chr12 40991695 40991730 -80265800 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 8 897 1071 106 6 12 chr12 40991730 40991743 -80265787 + B2_Mm2 SINE B2 159 171 -24 8 897 212 241 0 0 chr12 40992034 40992088 -80265442 + CT-rich Low_complexity Low_complexity 2 55 0 8 897 812 48 18 24 chr12 40993130 40993270 -80264260 - RLTR44A LTR ERVK 0 486 288 8 897 779 231 61 42 chr12 40994547 40994759 -80262771 + B3 SINE B2 1 216 0 8 897 194 204 0 22 chr12 40995225 40995270 -80262260 + MIR SINE MIR 104 147 -61 8 897 904 284 55 7 chr12 40995433 40995706 -80261824 - B4A SINE B4 -6 286 1 8 897 21 71 0 0 chr12 40995706 40995748 -80261782 + AT_rich Low_complexity Low_complexity 1 42 0 8 897 509 228 17 9 chr12 40995756 40995871 -80261659 - RSINE1 SINE B4 -45 120 5 8 897 803 182 15 0 chr12 40996105 40996237 -80261293 + B1_Mus1 SINE Alu 3 136 -12 8 897 297 0 0 0 chr12 40996237 40996270 -80261260 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 8 897 2095 174 5 35 chr12 40996773 40997179 -80260351 - MTC LTR MaLR -8 413 20 8 897 297 327 124 6 chr12 40997567 40997736 -80259794 - L2a LINE L2 -251 3175 2987 8 897 4164 90 5 41 chr12 40997766 40998378 -80259152 + L1_Mus3 LINE L1 6048 6637 -1 8 897 240 304 68 132 chr12 40998480 40998905 -80258625 - L2a LINE L2 -985 2434 2037 8 897 336 172 0 0 chr12 40998967 40999054 -80258476 + GA-rich Low_complexity Low_complexity 2 88 0 8 897 361 278 38 45 chr12 40999523 40999655 -80257875 - B3A SINE B2 -4 194 64 8 897 265 399 21 0 chr12 40999800 40999943 -80257587 - L2b LINE L2 -2 3373 3228 8 897 183 286 63 0 chr12 41000000 41000063 -80257467 - L2c LINE L2 -221 3166 3100 1 897 252 213 80 0 chr12 41000234 41000309 -80257221 - MIRc SINE MIR -100 168 88 2 897 898 175 102 266 chr12 41000427 41000734 -80256796 - ORR1C2 LTR MaLR 0 384 163 3 897 1129 82 0 0 chr12 41000734 41000872 -80256658 + B1_Mus2 SINE Alu 1 138 -9 4 897 570 51 0 0 chr12 41000872 41000950 -80256580 + (CAAAC)n Simple_repeat Simple_repeat 2 79 0 5 897 210 37 0 0 chr12 41000950 41000977 -80256553 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 897 898 175 102 266 chr12 41000984 41001135 -80256395 - ORR1C2 LTR MaLR -222 162 1 3 897 296 269 48 9 chr12 41001295 41001400 -80256130 - MIR SINE MIR -111 151 43 7 897 480 18 0 0 chr12 41001470 41001527 -80256003 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 897 1492 53 27 0 chr12 41002022 41002210 -80255320 + B2_Mm1t SINE B2 1 193 0 9 897 1632 112 4 72 chr12 41002395 41002673 -80254857 + MT2B LTR ERVL 1 259 -342 1 897 1768 174 34 37 chr12 41002696 41002928 -80254602 + RMER19A LTR ERVK 1 293 -444 1 897 954 93 58 0 chr12 41002928 41003067 -80254463 - B1_Mus1 SINE Alu 0 148 2 1 897 1768 193 36 64 chr12 41003067 41003273 -80254257 + RMER19A LTR ERVK 294 491 -246 1 897 465 115 57 11 chr12 41003260 41003348 -80254182 + MT2B LTR ERVL 510 601 0 1 897 582 296 141 15 chr12 41003398 41003568 -80253962 - L1ME1 LINE L1 -158 6021 5827 1 897 400 111 14 14 chr12 41003568 41003641 -80253889 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 897 582 296 141 15 chr12 41003641 41003796 -80253734 - L1ME1 LINE L1 -353 5826 5655 1 897 740 272 5 19 chr12 41003807 41004013 -80253517 - L1MB7 LINE L1 -55 6129 5927 1 897 504 248 90 0 chr12 41004216 41004349 -80253181 - B1F2 SINE Alu -1 148 4 1 897 551 288 98 42 chr12 41004353 41004589 -80252941 - L1MB7 LINE L1 -459 5725 5477 1 897 1188 153 232 59 chr12 41004630 41004936 -80252594 - ORR1B2 LTR MaLR -8 359 1 1 897 5448 181 56 15 chr12 41004936 41006250 -80251280 - ORR1B2-int LTR MaLR 0 1509 1 1 897 286 143 78 16 chr12 41006256 41006296 -80251234 - ORR1B2 LTR MaLR -14 353 313 1 897 4851 59 26 3 chr12 41006296 41006911 -80250619 + L1Md_F2 LINE L1 5954 6582 0 1 897 286 143 78 16 chr12 41006911 41006934 -80250596 - ORR1B2 LTR MaLR -55 312 286 1 897 610 299 0 0 chr12 41006932 41007079 -80250451 - B3A SINE B2 -51 147 1 1 897 233 222 0 36 chr12 41007889 41007945 -80249585 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 897 509 302 99 52 chr12 41007955 41008227 -80249303 - B4A SINE B4 0 292 8 2 897 596 223 0 8 chr12 41009071 41009193 -80248337 - B3 SINE B2 -95 121 1 2 897 207 0 0 0 chr12 41009749 41009772 -80247758 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 897 216 0 0 0 chr12 41009772 41009795 -80247735 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 897 462 91 0 0 chr12 41009886 41009963 -80247567 + (TA)n Simple_repeat Simple_repeat 2 78 0 2 897 396 0 0 0 chr12 41010248 41010292 -80247238 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 897 412 250 80 0 chr12 41010296 41010396 -80247134 - RSINE1 SINE B4 -54 111 4 2 897 460 223 74 0 chr12 41010396 41010514 -80247016 + MTE2b LTR MaLR 73 199 -180 2 897 544 252 41 0 chr12 41010550 41010673 -80246857 - B3A SINE B2 -70 128 1 2 897 23 0 0 0 chr12 41010875 41010898 -80246632 + AT_rich Low_complexity Low_complexity 1 23 0 3 897 583 275 94 127 chr12 41011055 41011221 -80246309 - Zaphod DNA Tip100 -1 4030 3896 3 897 1021 128 0 16 chr12 41011221 41011403 -80246127 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 897 879 181 7 0 chr12 41011403 41011547 -80245983 - B1_Mus1 SINE Alu -3 145 1 3 897 583 275 94 127 chr12 41011547 41011567 -80245963 - Zaphod DNA Tip100 -136 3895 3890 3 897 1624 36 0 15 chr12 41011567 41011762 -80245768 - B2_Mm1a SINE B2 0 193 2 3 897 583 275 94 127 chr12 41011762 41012219 -80245311 - Zaphod DNA Tip100 -142 3889 3407 3 897 629 300 181 10 chr12 41012228 41012521 -80245009 - MTE2b LTR MaLR -24 355 13 3 897 3392 245 182 37 chr12 41012535 41013774 -80243756 - MTE2b-int LTR MaLR -2 1578 146 3 897 4589 153 40 4 chr12 41013774 41014547 -80242983 + Lx LINE L1 5852 6652 -2 3 897 3392 245 182 37 chr12 41014547 41014634 -80242896 - MTE2b-int LTR MaLR -1435 145 59 3 897 613 299 43 14 chr12 41014659 41014869 -80242661 - MTEb LTR MaLR -10 369 154 3 897 811 257 128 23 chr12 41014891 41015234 -80242296 - MTE2a LTR MaLR 0 379 1 3 897 213 238 0 0 chr12 41015234 41015274 -80242256 + B4 SINE B4 21 60 -232 3 897 319 312 80 9 chr12 41015372 41015485 -80242045 - MER58A DNA MER1_type -103 121 1 4 897 648 231 35 17 chr12 41015697 41015869 -80241661 - MT2A LTR ERVL -260 273 99 4 897 701 188 0 8 chr12 41015872 41016001 -80241529 - MT2A LTR ERVL -403 130 3 4 897 230 236 133 11 chr12 41016001 41016088 -80241442 + RCHARR1 DNA MER1_type 772 869 -105 4 897 2232 88 3 3 chr12 41016096 41016415 -80241115 + ORR1A2 LTR MaLR 1 319 -8 4 897 588 264 42 25 chr12 41016508 41016699 -80240831 + Lx8 LINE L1 6963 7233 -411 4 897 216 296 0 0 chr12 41016715 41016769 -80240761 + G-rich Low_complexity Low_complexity 1 54 0 4 897 1485 75 5 0 chr12 41016820 41017008 -80240522 + B2_Mm1t SINE B2 2 190 -3 4 897 3876 56 23 42 chr12 41017804 41018326 -80239204 - RLTR1B LTR ERV1 0 512 1 4 897 921 283 41 22 chr12 41018327 41018584 -80238946 + B4 SINE B4 14 275 -17 4 897 3046 60 39 3 chr12 41018584 41018968 -80238562 + MTB LTR MaLR 1 398 -2 4 897 921 283 41 22 chr12 41018968 41018981 -80238549 + B4 SINE B4 276 288 -4 4 897 393 75 0 0 chr12 41019213 41019266 -80238264 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 897 269 174 0 14 chr12 41019266 41019336 -80238194 + (TATG)n Simple_repeat Simple_repeat 2 70 0 5 897 866 177 98 36 chr12 41019458 41019651 -80237879 - B3 SINE B2 -10 206 2 5 897 273 304 54 0 chr12 41020275 41020367 -80237163 + MER117 DNA MER1_type 1 97 -100 5 897 306 331 66 39 chr12 41020688 41020870 -80236660 - ORR1E LTR MaLR -167 192 6 5 897 2116 123 0 63 chr12 41020982 41021330 -80236200 + ORR1A3 LTR MaLR 1 326 0 5 897 494 241 117 34 chr12 41021476 41021682 -80235848 - Charlie4a DNA MER1_type -246 262 40 5 897 767 271 144 19 chr12 41021690 41022002 -80235528 + MTE2b LTR MaLR 1 351 -28 5 897 780 268 62 0 chr12 41022489 41022668 -80234862 + B3A SINE B2 9 198 0 5 897 282 369 0 8 chr12 41023321 41023444 -80234086 + CT-rich Low_complexity Low_complexity 3 124 0 5 897 291 193 184 43 chr12 41023793 41023934 -80233596 - L1M2 LINE L1 -1315 4828 4668 6 897 1152 49 14 14 chr12 41024065 41024211 -80233319 - B1_Mm SINE Alu 0 147 2 6 897 357 266 248 36 chr12 41024305 41024527 -80233003 + RMER21B LTR ERV1 299 567 -275 6 897 486 0 0 0 chr12 41024894 41024948 -80232582 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 897 1179 69 0 0 chr12 41024949 41025094 -80232436 + B1_Mm SINE Alu 1 145 -2 6 897 365 310 82 0 chr12 41025117 41025288 -80232242 + MER2 DNA MER2_type 124 308 -37 6 112 915 267 64 48 chr12 41025288 41025646 -80231884 - MTD LTR MaLR 0 419 56 6 898 2145 170 68 15 chr12 41025668 41026068 -80231462 + MTC LTR MaLR 1 421 0 6 898 1161 75 0 0 chr12 41026215 41026362 -80231168 - B1_Mus2 SINE Alu 0 147 1 6 898 5861 70 16 5 chr12 41026614 41027480 -80230050 + RLTR13A3 LTR ERVK 1 978 0 6 898 283 208 0 0 chr12 41027533 41027586 -80229944 + MER102c DNA MER1_type 76 128 -203 7 898 364 239 12 34 chr12 41028748 41028852 -80228678 - ORR1B1-int LTR MaLR -1713 250 150 7 898 1239 41 0 0 chr12 41029100 41029246 -80228284 + B1_Mm SINE Alu 2 147 0 7 898 225 118 0 0 chr12 41029618 41029652 -80227878 + ORR1C1 LTR MaLR 1 34 -340 7 898 560 122 0 0 chr12 41029644 41029734 -80227796 + ORR1C1 LTR MaLR 289 378 0 7 898 5351 210 71 28 chr12 41029734 41031046 -80226484 + ORR1C1-int LTR MaLR 1 1368 -2 7 898 1229 202 151 22 chr12 41031051 41031370 -80226160 + ORR1C1 LTR MaLR 19 378 0 7 898 252 274 65 9 chr12 41032192 41032299 -80225231 - MLT1K LTR MaLR -4 591 479 7 898 1111 194 128 7 chr12 41032385 41032681 -80224849 - Lx9 LINE L1 0 7644 7313 7 898 4031 55 0 6 chr12 41032733 41033290 -80224240 - L1Md_F2 LINE L1 0 6582 6075 7 898 954 40 0 0 chr12 41033357 41033482 -80224048 + B1_Mus1 SINE Alu 23 147 -1 7 898 12712 155 37 41 chr12 41033532 41036322 -80221208 - Lx5 LINE L1 -892 6158 3366 7 898 1168 82 0 0 chr12 41036324 41036471 -80221059 + B1_Mus1 SINE Alu 2 148 0 7 898 2486 159 83 74 chr12 41036486 41037014 -80220516 + RMER16 LTR ERVK 1 533 0 8 898 3170 196 68 19 chr12 41037014 41037643 -80219887 + Lx5 LINE L1 6386 7045 -5 8 898 315 122 0 0 chr12 41037688 41037737 -80219793 + (A)n Simple_repeat Simple_repeat 1 49 0 8 898 2662 172 67 76 chr12 41038053 41038670 -80218860 + RMER19C LTR ERVK 1 611 0 8 898 307 274 70 0 chr12 41038928 41039047 -80218483 - PB1D10 SINE Alu -22 126 3 8 898 600 219 81 58 chr12 41039971 41040145 -80217385 - ORR1B2 LTR MaLR -189 178 1 8 898 781 304 20 20 chr12 41040260 41040552 -80216978 + B4 SINE B4 1 292 0 8 898 527 272 194 58 chr12 41040697 41040950 -80216580 - L1MC4 LINE L1 -4 8038 7761 8 898 811 236 250 10 chr12 41040950 41041254 -80216276 + MTEa LTR MaLR 3 379 0 8 898 527 255 184 40 chr12 41041254 41041563 -80215967 - L1MC4 LINE L1 -282 7760 7386 8 898 30 77 0 0 chr12 41043897 41043962 -80213568 + AT_rich Low_complexity Low_complexity 1 65 0 8 898 690 199 27 60 chr12 41044647 41044797 -80212733 + B1_Mur1 SINE Alu 5 149 0 9 898 401 0 20 0 chr12 41046041 41046090 -80211440 + (TTA)n Simple_repeat Simple_repeat 2 51 0 9 898 1515 68 5 0 chr12 41046333 41046525 -80211005 - B2_Mm1a SINE B2 0 193 1 9 898 679 241 53 0 chr12 41046908 41047095 -80210435 - MTE2b LTR MaLR -163 216 20 9 898 566 191 0 0 chr12 41047804 41047898 -80209632 + B3A SINE B2 3 96 -102 9 898 379 301 71 17 chr12 41048227 41048423 -80209107 - MLT1J LTR MaLR -322 190 2 9 898 191 190 17 0 chr12 41048824 41048882 -80208648 + A-rich Low_complexity Low_complexity 2 60 0 9 898 21 0 0 0 chr12 41048939 41048960 -80208570 + AT_rich Low_complexity Low_complexity 1 21 0 9 898 243 218 0 18 chr12 41049593 41049649 -80207881 + RMER30 DNA MER1_type 31 85 -117 9 898 886 309 25 14 chr12 41049719 41050005 -80207525 + B4A SINE B4 4 292 0 9 898 285 187 0 74 chr12 41050008 41050041 -80207489 - Charlie12 DNA MER1_type -2746 127 100 1 898 216 0 0 0 chr12 41050041 41050065 -80207465 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 898 285 187 0 74 chr12 41050065 41050112 -80207418 - Charlie12 DNA MER1_type -2774 99 53 1 898 404 196 43 11 chr12 41050113 41050206 -80207324 + RMER30 DNA MER1_type 99 194 -8 9 898 275 254 16 0 chr12 41050219 41050282 -80207248 + L2 LINE L2 2746 2809 -610 1 898 254 291 0 0 chr12 41050647 41050702 -80206828 + Lx8 LINE L1 7244 7298 -175 1 898 27 49 0 0 chr12 41051043 41051084 -80206446 + AT_rich Low_complexity Low_complexity 1 41 0 1 898 209 182 0 18 chr12 41051845 41051901 -80205629 + A-rich Low_complexity Low_complexity 5 59 0 1 898 315 122 0 0 chr12 41052656 41052705 -80204825 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1 898 1111 96 0 0 chr12 41052706 41052852 -80204678 - B1_Mus2 SINE Alu -1 146 1 1 898 319 335 59 7 chr12 41053469 41053622 -80203908 + MIR SINE MIR 77 237 -25 1 898 513 282 6 18 chr12 41055631 41055797 -80201733 + MTEa LTR MaLR 207 370 -9 1 898 698 119 20 0 chr12 41056421 41056522 -80201008 - B1_Mus2 SINE Alu 0 147 45 1 898 272 211 26 66 chr12 41056456 41056532 -80200998 - MT2B LTR ERVL -337 264 192 1 898 280 222 54 32 chr12 41056626 41056719 -80200811 + Ricksha_c DNA MuDR 354 448 -1600 1 898 351 268 96 56 chr12 41056755 41056933 -80200597 + MLT2B3 LTR ERVL 370 554 0 1 898 743 284 92 23 chr12 41057273 41057579 -80199951 - L1MA6 LINE L1 -198 6102 5776 1 898 624 302 16 5 chr12 41059474 41059664 -80197866 + MLT2B1 LTR ERVL 1 192 -328 1 898 2416 142 46 27 chr12 41059682 41060094 -80197436 - RMER6B LTR ERVK -39 422 3 1 898 294 354 89 21 chr12 41061212 41061538 -80195992 + L1MA4 LINE L1 328 675 -5867 1 898 1553 63 16 0 chr12 41061653 41061844 -80195686 + B2_Mm2 SINE B2 2 195 0 1 898 1391 229 48 97 chr12 41062123 41062620 -80194910 + Lx7 LINE L1 7223 7695 -1 1 898 189 0 0 0 chr12 41063182 41063203 -80194327 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 898 331 307 8 95 chr12 41063821 41063947 -80193583 - PB1 SINE Alu -12 115 1 1 898 658 297 26 10 chr12 41063979 41064173 -80193357 + B3A SINE B2 2 198 0 1 898 1538 297 107 12 chr12 41064184 41065465 -80192065 + L1MA4 LINE L1 4971 6432 -366 1 898 384 22 0 0 chr12 41065480 41065525 -80192005 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 898 685 136 119 0 chr12 41065564 41065682 -80191848 - B1_Mur3 SINE Alu 0 149 18 1 898 866 109 7 0 chr12 41066166 41066303 -80191227 + (TCCC)n Simple_repeat Simple_repeat 4 141 0 1 898 2161 314 114 37 chr12 41066329 41067462 -80190068 - Lx8 LINE L1 -2 7471 6252 1 898 571 92 29 39 chr12 41067475 41067577 -80189953 - RMER1B Other Other -5 1061 961 1 898 255 31 0 0 chr12 41067587 41067619 -80189911 + (CAAAC)n Simple_repeat Simple_repeat 3 34 0 1 898 201 286 0 0 chr12 41068421 41068470 -80189060 + GA-rich Low_complexity Low_complexity 1 49 0 1 898 2337 200 79 20 chr12 41068678 41069173 -80188357 + RLTR28 LTR ERVL 1 524 0 1 898 2771 63 3 0 chr12 41069505 41069853 -80187677 + L1Md_F2 LINE L1 5238 5586 -297 1 898 8598 41 10 2 chr12 41069853 41070839 -80186691 + L1Md_F2 LINE L1 5587 6580 -2 1 898 1418 257 58 62 chr12 41071357 41071838 -80185692 + RMER5 LTR ERV1 49 527 -7 1 898 21 57 0 0 chr12 41072272 41072307 -80185223 + AT_rich Low_complexity Low_complexity 1 35 0 1 898 185 318 0 0 chr12 41074296 41074359 -80183171 + L3 LINE CR1 1904 1966 -2523 1 898 25 31 0 0 chr12 41075705 41075737 -80181793 + AT_rich Low_complexity Low_complexity 1 32 0 1 898 698 207 26 13 chr12 41076837 41076989 -80180541 + B3 SINE B2 63 216 0 1 898 702 231 8 0 chr12 41077072 41077202 -80180328 + RSINE1 SINE B4 3 133 -32 1 898 378 322 84 78 chr12 41077275 41077595 -80179935 + ORR1E LTR MaLR 4 325 -34 1 898 3174 62 39 0 chr12 41078220 41078605 -80178925 - MTB LTR MaLR 0 400 1 1 898 12986 78 1 6 chr12 41079762 41082082 -80175448 + L1_Mus1 LINE L1 4123 6429 -138 1 898 252 0 0 0 chr12 41082082 41082110 -80175420 + (A)n Simple_repeat Simple_repeat 1 28 0 1 898 221 269 128 0 chr12 41082118 41082196 -80175334 + B1_Mus2 SINE Alu 3 90 -57 1 898 1372 80 0 38 chr12 41083239 41083261 -80174269 - B2_Mm2 SINE B2 -18 177 161 1 898 183 80 0 0 chr12 41083261 41083286 -80174244 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 898 1372 80 0 38 chr12 41083286 41083446 -80174084 - B2_Mm2 SINE B2 -35 160 2 1 898 1212 49 14 0 chr12 41084146 41084290 -80173240 - B1_Mus2 SINE Alu 0 147 2 1 898 781 173 49 21 chr12 41084294 41084436 -80173094 - B1_Mus2 SINE Alu 0 147 2 1 898 2321 99 48 0 chr12 41084562 41084876 -80172654 - ORR1A4 LTR MaLR 0 329 1 1 898 233 218 134 49 chr12 41085019 41085101 -80172429 + L2a LINE L2 3313 3401 -25 1 898 333 0 0 0 chr12 41085751 41085788 -80171742 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 898 414 0 0 0 chr12 41085788 41085833 -80171697 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 898 1281 70 0 6 chr12 41086510 41086683 -80170847 + L1_Mus2 LINE L1 6395 6566 0 1 898 1214 81 0 0 chr12 41089421 41089569 -80167961 + B1_Mus1 SINE Alu 1 148 0 1 898 183 80 0 0 chr12 41089569 41089594 -80167936 + (A)n Simple_repeat Simple_repeat 1 25 0 1 898 378 268 18 78 chr12 41089890 41090100 -80167430 + B4A SINE B4 9 247 -45 1 898 2463 79 6 0 chr12 41090100 41090416 -80167114 + L1_Mus2 LINE L1 6248 6565 -1 1 898 273 57 0 0 chr12 41090455 41090490 -80167040 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 898 546 324 0 0 chr12 41091036 41091178 -80166352 - ID_B1 SINE B4 -1 223 82 1 898 1046 230 33 5 chr12 41091250 41091460 -80166070 + B3 SINE B2 1 216 0 1 898 643 281 82 89 chr12 41092762 41093055 -80164475 + B4A SINE B4 2 292 0 1 898 210 37 0 0 chr12 41093652 41093679 -80163851 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 898 833 36 264 0 chr12 41093679 41093789 -80163741 - B1_Mus1 SINE Alu -9 139 1 1 898 22 35 0 0 chr12 41094129 41094158 -80163372 + AT_rich Low_complexity Low_complexity 1 29 0 1 898 245 350 21 0 chr12 41094183 41094280 -80163250 + PB1 SINE Alu 21 119 -8 1 898 444 287 0 0 chr12 41094304 41094405 -80163125 - PB1D10 SINE Alu 0 117 17 1 898 403 274 28 0 chr12 41096331 41096437 -80161093 + PB1D10 SINE Alu 9 117 0 1 898 410 263 52 105 chr12 41096712 41096865 -80160665 + B4 SINE B4 79 223 -69 1 898 835 120 8 31 chr12 41096738 41096867 -80160663 + B1_Mus2 SINE Alu 22 147 0 1 898 39863 55 1 23 chr12 41097404 41104085 -80153445 - L1Md_T LINE L1 0 6582 99 1 898 488 212 36 43 chr12 41106303 41106441 -80151089 + ID_B1 SINE B4 86 222 -2 1 898 319 312 0 0 chr12 41106450 41106530 -80151000 + ID4_ SINE ID 2 81 -2 1 898 21 36 0 0 chr12 41106557 41106585 -80150945 + AT_rich Low_complexity Low_complexity 1 28 0 1 898 184 322 74 104 chr12 41106683 41106818 -80150712 - L2c LINE L2 0 3387 3257 1 898 1808 217 109 16 chr12 41107156 41107643 -80149887 + Lx8 LINE L1 6941 7472 -1 1 898 545 92 35 0 chr12 41107668 41107755 -80149775 + Lx LINE L1 6554 6643 -11 1 898 1269 181 20 20 chr12 41108514 41108767 -80148763 + MTC LTR MaLR 169 421 0 1 898 242 351 129 39 chr12 41108973 41109151 -80148379 + L2b LINE L2 3177 3370 -5 1 898 275 203 15 45 chr12 41109454 41109521 -80148009 - PB1D7 SINE Alu 0 120 56 1 898 265 195 0 0 chr12 41110493 41110534 -80146996 + LTR16B LTR ERVL 1 41 -422 1 898 622 265 90 31 chr12 41110601 41110823 -80146707 + L1MB1 LINE L1 5254 5488 -680 1 898 534 292 117 81 chr12 41110841 41111061 -80146469 + L1MB1 LINE L1 5573 5823 -366 1 898 794 243 7 0 chr12 41111061 41111213 -80146317 + RSINE1 SINE B4 1 153 -12 1 898 462 36 0 0 chr12 41111221 41111277 -80146253 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 898 534 292 117 81 chr12 41111277 41111629 -80145901 + L1MB1 LINE L1 5824 6175 -14 1 898 1581 223 85 10 chr12 41111874 41112264 -80145266 - MTD LTR MaLR 0 419 1 1 898 374 176 12 0 chr12 41112400 41112485 -80145045 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 1 898 501 17 0 0 chr12 41112501 41112559 -80144971 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 898 22 0 0 0 chr12 41112743 41112765 -80144765 + AT_rich Low_complexity Low_complexity 1 22 0 1 898 424 308 92 8 chr12 41113511 41113642 -80143888 - MTE2a LTR MaLR -2 377 236 1 898 576 310 58 17 chr12 41114283 41114457 -80143073 + B3A SINE B2 16 196 -2 1 898 1027 253 16 96 chr12 41114493 41114816 -80142714 + MTEa LTR MaLR 64 360 -19 1 898 271 265 145 0 chr12 41115400 41115483 -80142047 - PB1D10 SINE Alu -19 98 4 1 898 21 0 0 0 chr12 41115885 41115906 -80141624 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 1258 69 116 0 chr12 41116557 41116730 -80140800 + B2_Mm2 SINE B2 3 195 0 1 898 698 289 19 9 chr12 41117596 41117809 -80139721 + ID_B1 SINE B4 2 216 -8 1 898 294 282 81 9 chr12 41118150 41118261 -80139269 - MER5B DNA MER1_type 0 178 60 1 898 21 0 0 0 chr12 41118445 41118466 -80139064 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 491 314 98 42 chr12 41118565 41118801 -80138729 + Tigger9a DNA Tigger 231 479 -253 1 898 663 13 0 0 chr12 41120368 41120444 -80137086 + (GGA)n Simple_repeat Simple_repeat 1 76 0 1 898 5377 32 2 0 chr12 41120444 41121038 -80136492 + L1Md_T LINE L1 5987 6581 -1 1 898 399 89 0 0 chr12 41121040 41121096 -80136434 + (GGA)n Simple_repeat Simple_repeat 3 58 0 1 898 289 275 14 0 chr12 41122160 41122229 -80135301 + ID4_ SINE ID 5 74 -9 1 898 507 276 95 36 chr12 41122277 41122499 -80135031 + RMER5 LTR ERV1 49 283 -251 2 898 6133 48 17 1 chr12 41122603 41123443 -80134087 + MusHAL1 LINE L1 1074 1923 -1894 2 898 423 285 27 142 chr12 41123529 41123754 -80133776 + B4A SINE B4 92 290 -2 2 898 330 26 0 0 chr12 41123901 41123940 -80133590 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 898 764 319 68 0 chr12 41123940 41124164 -80133366 - B4A SINE B4 -23 269 29 2 898 192 77 0 0 chr12 41124164 41124190 -80133340 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 898 764 319 68 0 chr12 41124190 41124213 -80133317 - B4A SINE B4 -264 28 6 2 898 222 288 0 33 chr12 41124234 41124295 -80133235 + A-rich Low_complexity Low_complexity 1 59 0 2 898 219 69 0 0 chr12 41125176 41125205 -80132325 + (A)n Simple_repeat Simple_repeat 1 29 0 2 898 180 0 0 0 chr12 41125958 41125978 -80131552 + (A)n Simple_repeat Simple_repeat 1 20 0 2 898 251 228 0 0 chr12 41127003 41127060 -80130470 + T-rich Low_complexity Low_complexity 1 57 0 2 898 1245 55 7 0 chr12 41127060 41127206 -80130324 - B1_Mus2 SINE Alu 0 147 1 2 898 234 105 0 0 chr12 41127401 41127439 -80130091 + (CAAT)n Simple_repeat Simple_repeat 3 40 0 2 898 270 0 0 0 chr12 41127534 41127564 -80129966 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 898 417 284 60 0 chr12 41128219 41128335 -80129195 + RSINE1 SINE B4 2 124 -41 2 898 366 23 0 0 chr12 41128335 41128378 -80129152 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 898 3073 27 0 3 chr12 41128678 41129016 -80128514 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 898 56430 23 13 7 chr12 41129016 41135450 -80122080 + IAPEz-int LTR ERVK 8 6481 0 2 898 3009 39 0 3 chr12 41135450 41135788 -80121742 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 898 1738 173 48 34 chr12 41135915 41136273 -80121257 - ORR1D1 LTR MaLR -11 363 1 2 898 249 258 0 61 chr12 41136275 41136341 -80121189 + 4.5SRNA scRNA scRNA 27 88 -6 2 898 529 229 0 60 chr12 41136287 41136403 -80121127 + B1F1 SINE Alu 40 148 -1 2 898 1180 92 0 0 chr12 41136422 41136563 -80120967 - B1_Mus1 SINE Alu -6 142 2 2 898 5761 62 0 3 chr12 41136708 41137424 -80120106 + L1Md_F2 LINE L1 4873 5586 -297 2 898 7764 66 29 8 chr12 41137424 41138389 -80119141 + L1Md_F2 LINE L1 5587 6571 -11 2 898 230 283 0 0 chr12 41138741 41138787 -80118743 - ID4_ SINE ID -18 65 20 2 898 1265 54 7 0 chr12 41139832 41139979 -80117551 + B1_Mus1 SINE Alu 1 148 0 2 898 294 291 35 58 chr12 41140081 41140190 -80117340 - PB1D7 SINE Alu -26 123 12 2 898 232 244 9 151 chr12 41140119 41140225 -80117305 - MT2B2 LTR ERVL -345 239 149 2 898 372 252 50 0 chr12 41141396 41141495 -80116035 - MER5A DNA MER1_type -85 104 1 2 898 295 256 149 37 chr12 41142465 41142599 -80114931 - B1F2 SINE Alu 0 149 1 2 898 610 143 0 16 chr12 41144346 41144467 -80113063 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 898 773 244 152 8 chr12 41144548 41144804 -80112726 + Lx8 LINE L1 7176 7468 -5 2 898 22 0 0 0 chr12 41144804 41144826 -80112704 + AT_rich Low_complexity Low_complexity 1 22 0 2 898 767 201 90 0 chr12 41145498 41145632 -80111898 + B1_Mus1 SINE Alu 3 148 0 2 898 204 40 0 0 chr12 41145760 41145785 -80111745 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 898 662 343 25 0 chr12 41145854 41146058 -80111472 - Lx8 LINE L1 -160 7313 7105 2 898 660 310 54 103 chr12 41147080 41147486 -80110044 + MLT1B LTR MaLR 1 386 -4 2 898 305 205 44 13 chr12 41148268 41148360 -80109170 + L1MB7 LINE L1 5716 5818 -361 2 898 378 292 135 23 chr12 41148369 41148502 -80109028 + B3A SINE B2 1 148 -50 2 898 2349 124 188 59 chr12 41148485 41148975 -80108555 - RMER4B LTR ERVK -11 574 22 2 898 443 296 0 36 chr12 41148960 41149072 -80108458 + B3 SINE B2 109 216 0 2 898 228 151 56 19 chr12 41149243 41149297 -80108233 + RMER1C Other Other 1285 1340 -2 2 898 836 161 19 77 chr12 41149339 41149494 -80108036 + B1_Mur4 SINE Alu 5 150 0 2 898 393 247 31 0 chr12 41149516 41149613 -80107917 + L1MB7 LINE L1 5890 5989 -195 2 898 340 238 78 10 chr12 41149975 41150077 -80107453 + L1MB7 LINE L1 6002 6110 -68 2 898 334 269 32 0 chr12 41150230 41150323 -80107207 - L1MB8 LINE L1 -189 5989 5894 2 898 189 0 0 0 chr12 41150323 41150344 -80107186 + (T)n Simple_repeat Simple_repeat 1 21 0 2 898 261 0 0 0 chr12 41151047 41151076 -80106454 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 898 23 0 0 0 chr12 41151233 41151256 -80106274 + AT_rich Low_complexity Low_complexity 1 23 0 2 898 517 284 92 31 chr12 41151306 41151533 -80105997 - MTE-int LTR MaLR -864 506 285 2 898 380 294 194 19 chr12 41151965 41152180 -80105350 - MTE-int LTR MaLR -1288 292 7 2 898 473 291 40 69 chr12 41152224 41152471 -80105059 + L1M2 LINE L1 5312 5551 -749 2 898 288 0 0 0 chr12 41153305 41153337 -80104193 + (CAATC)n Simple_repeat Simple_repeat 2 33 0 2 898 195 42 0 0 chr12 41153699 41153723 -80103807 + (CAAAC)n Simple_repeat Simple_repeat 5 28 0 2 898 313 318 150 40 chr12 41153813 41154013 -80103517 + MLT1A0 LTR MaLR 3 224 -141 2 898 1026 244 21 57 chr12 41154586 41154808 -80102722 + B4A SINE B4 1 215 -77 2 898 387 0 0 0 chr12 41154808 41154851 -80102679 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 2 898 1026 244 21 57 chr12 41154851 41154910 -80102620 + B4A SINE B4 216 272 -20 2 898 483 82 0 0 chr12 41156125 41156198 -80101332 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 2 898 384 205 177 9 chr12 41156241 41156354 -80101176 - B1_Mus1 SINE Alu -15 133 2 2 899 1207 167 407 27 chr12 41158226 41158558 -80098972 - RMER6B LTR ERVK -2 459 2 2 899 198 0 0 0 chr12 41159521 41159543 -80097987 + (A)n Simple_repeat Simple_repeat 1 22 0 2 899 585 322 84 46 chr12 41159613 41160004 -80097526 + MLT1C LTR MaLR 54 459 -8 2 899 865 157 20 0 chr12 41160156 41160303 -80097227 + B1_Mur4 SINE Alu 1 150 0 2 899 190 89 0 62 chr12 41160305 41160353 -80097177 + A-rich Low_complexity Low_complexity 2 46 0 2 899 511 221 367 0 chr12 41160389 41160547 -80096983 + B3 SINE B2 1 216 0 2 899 21 0 0 0 chr12 41161470 41161491 -80096039 + AT_rich Low_complexity Low_complexity 1 21 0 2 899 557 242 98 0 chr12 41162215 41162347 -80095183 + B1_Mus2 SINE Alu 2 146 -1 2 899 543 290 140 58 chr12 41163160 41163468 -80094062 + MER31B LTR ERV1 37 369 -97 2 899 371 241 51 0 chr12 41164842 41164921 -80092609 + ID4_ SINE ID 1 83 0 2 899 234 217 265 0 chr12 41164934 41165017 -80092513 + B4 SINE B4 114 218 -74 2 899 264 301 172 22 chr12 41165613 41165793 -80091737 - MIRc SINE MIR -43 225 19 2 899 1792 187 131 11 chr12 41166209 41166576 -80090954 + MTD LTR MaLR 2 412 -7 2 899 180 275 35 59 chr12 41167300 41167385 -80090145 + MIR SINE MIR 180 262 0 2 899 438 284 40 95 chr12 41169398 41169620 -80087910 - B4A SINE B4 0 292 83 2 899 215 169 45 15 chr12 41170521 41170587 -80086943 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 899 21 0 0 0 chr12 41170889 41170910 -80086620 + AT_rich Low_complexity Low_complexity 1 21 0 2 899 1123 75 14 0 chr12 41171045 41171191 -80086339 + B1_Mus1 SINE Alu 1 148 0 2 899 252 368 7 49 chr12 41175617 41175749 -80081781 + PB1D10 SINE Alu 1 130 -19 2 899 198 143 0 0 chr12 41175753 41175788 -80081742 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 899 213 313 30 0 chr12 41175791 41175858 -80081672 + ID2 SINE ID 8 76 -7 2 899 465 66 0 0 chr12 41176603 41176664 -80080866 + (GAAA)n Simple_repeat Simple_repeat 1 61 0 2 899 22 35 0 0 chr12 41177489 41177518 -80080012 + AT_rich Low_complexity Low_complexity 1 29 0 2 899 267 232 0 0 chr12 41177796 41177852 -80079678 - MER112 DNA MER1_type -204 57 2 2 899 533 129 11 0 chr12 41177942 41178035 -80079495 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 2 899 273 146 0 0 chr12 41178034 41178082 -80079448 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 899 324 0 0 0 chr12 41178201 41178237 -80079293 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 899 233 0 62 0 chr12 41178304 41178336 -80079194 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 899 1540 304 133 33 chr12 41178345 41179185 -80078345 - Lx8 LINE L1 -241 7232 6309 2 899 1361 244 65 15 chr12 41179291 41179690 -80077840 + MTD LTR MaLR 1 419 0 2 899 1362 191 138 27 chr12 41180084 41180417 -80077113 - ORR1D1 LTR MaLR 0 374 5 2 899 394 306 53 5 chr12 41180425 41180612 -80076918 - MIR SINE MIR -1 261 66 2 899 26 0 0 0 chr12 41180854 41180880 -80076650 + AT_rich Low_complexity Low_complexity 1 26 0 2 899 180 176 0 0 chr12 41181046 41181080 -80076450 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 899 414 260 88 58 chr12 41181440 41181716 -80075814 - MLT1A LTR MaLR -22 352 49 2 899 261 225 0 53 chr12 41181933 41182008 -80075522 + B3 SINE B2 119 189 -27 2 899 228 35 0 0 chr12 41183639 41183668 -80073862 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 899 632 254 152 53 chr12 41184340 41184681 -80072849 + MLT1B LTR MaLR 1 375 -15 2 899 245 29 29 0 chr12 41188237 41188271 -80069259 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 899 308 310 72 8 chr12 41188754 41188886 -80068644 + MIR3 SINE MIR 48 185 -23 2 899 357 24 0 0 chr12 41190335 41190377 -80067153 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 899 196 337 153 6 chr12 41191576 41191746 -80065784 - MIRc SINE MIR -32 236 42 2 899 186 103 0 0 chr12 41191793 41191822 -80065708 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 2 899 459 0 0 0 chr12 41191825 41191876 -80065654 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2 899 348 64 0 0 chr12 41191879 41191926 -80065604 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 2 899 805 194 0 11 chr12 41191926 41192108 -80065422 + CT-rich Low_complexity Low_complexity 1 180 0 2 899 198 103 0 0 chr12 41192109 41192138 -80065392 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 2 899 415 233 19 88 chr12 41192164 41192324 -80065206 - Lx7 LINE L1 0 7696 7548 3 899 230 225 0 27 chr12 41192377 41192450 -80065080 + A-rich Low_complexity Low_complexity 3 73 0 3 899 2038 232 16 11 chr12 41192450 41192894 -80064636 - Lx7 LINE L1 -333 7363 6918 3 899 204 139 28 0 chr12 41193121 41193157 -80064373 + CT-rich Low_complexity Low_complexity 3 39 0 3 899 239 297 69 42 chr12 41193169 41193313 -80064217 + MIRc SINE MIR 117 264 -4 3 899 294 29 0 0 chr12 41195251 41195286 -80062244 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 899 322 289 175 0 chr12 41195286 41195400 -80062130 - B3A SINE B2 -59 139 6 3 899 818 259 28 9 chr12 41195403 41195617 -80061913 - ID_B1 SINE B4 0 224 7 3 899 202 234 14 72 chr12 41196011 41196080 -80061450 - MIR SINE MIR -2 260 196 3 899 3771 47 37 26 chr12 41197276 41197812 -80059718 - L1_Mus1 LINE L1 -488 6079 5536 3 899 314 41 0 0 chr12 41197812 41197861 -80059669 + L1_Mus4 LINE L1 6586 6634 -2 3 899 260 111 22 0 chr12 41197864 41197909 -80059621 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 3 899 261 0 0 0 chr12 41197981 41198010 -80059520 + (A)n Simple_repeat Simple_repeat 1 29 0 3 899 451 189 429 0 chr12 41199312 41199475 -80058055 - ORR1B2 LTR MaLR -129 238 6 3 899 381 70 0 0 chr12 41199510 41199567 -80057963 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 3 899 329 327 11 56 chr12 41200922 41201100 -80056430 + Charlie2a DNA MER1_type 154 323 -2538 3 899 946 234 98 44 chr12 41201104 41201511 -80056019 + Charlie2a DNA MER1_type 1855 2283 -578 3 899 417 321 0 0 chr12 41201506 41201612 -80055918 - PB1D10 SINE Alu -6 111 6 3 899 207 205 0 0 chr12 41201751 41201790 -80055740 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 3 899 672 221 5 72 chr12 41201882 41202077 -80055453 - B3 SINE B2 -5 211 30 3 899 273 57 0 0 chr12 41202077 41202112 -80055418 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 899 233 126 7 13 chr12 41202112 41202163 -80055367 - B1_Mus2 SINE Alu -9 138 89 3 899 567 234 65 157 chr12 41202163 41202411 -80055119 - B4 SINE B4 -67 225 1 3 899 260 310 89 45 chr12 41202522 41202903 -80054627 + Charlie2a DNA MER1_type 2457 2854 -7 3 899 22 35 0 0 chr12 41203076 41203105 -80054425 + AT_rich Low_complexity Low_complexity 1 29 0 3 899 766 274 122 13 chr12 41203105 41203342 -80054188 + B4A SINE B4 1 263 -29 3 899 431 87 14 0 chr12 41203379 41203448 -80054082 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 899 486 211 135 24 chr12 41205839 41206009 -80051521 + MLT1B LTR MaLR 36 224 -166 3 899 278 314 0 28 chr12 41206168 41206276 -80051254 + MLT1B LTR MaLR 197 301 -89 3 899 326 273 0 33 chr12 41206332 41206423 -80051107 + MLT1B LTR MaLR 301 388 -2 3 899 460 253 68 14 chr12 41207067 41207215 -80050315 - RSINE1 SINE B4 -6 159 4 3 899 255 79 0 0 chr12 41207320 41207358 -80050172 + (T)n Simple_repeat Simple_repeat 1 38 0 3 899 999 50 49 21 chr12 41207573 41207715 -80049815 - B1_Mm SINE Alu 0 147 2 3 899 212 143 24 0 chr12 41208057 41208099 -80049431 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 899 844 200 21 0 chr12 41208116 41208261 -80049269 - B1_Mur4 SINE Alu -1 149 2 3 899 332 191 12 0 chr12 41211231 41211315 -80046215 + CT-rich Low_complexity Low_complexity 4 88 0 3 899 29 0 0 0 chr12 41211592 41211621 -80045909 + AT_rich Low_complexity Low_complexity 1 29 0 3 899 187 288 62 0 chr12 41213059 41213139 -80044391 - MIR SINE MIR -64 198 114 3 899 324 295 48 0 chr12 41213558 41213663 -80043867 - MER2 DNA MER2_type -228 117 8 3 899 205 175 105 0 chr12 41213843 41213900 -80043630 + (GAGTG)n Simple_repeat Simple_repeat 4 66 0 3 899 414 114 0 0 chr12 41214166 41214236 -80043294 + (TATG)n Simple_repeat Simple_repeat 1 70 0 3 899 180 0 0 0 chr12 41214631 41214651 -80042879 + (T)n Simple_repeat Simple_repeat 1 20 0 3 899 1146 36 0 7 chr12 41214651 41214789 -80042741 + B1_Mm SINE Alu 2 138 -9 3 899 255 31 0 0 chr12 41214789 41214821 -80042709 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 899 414 175 0 0 chr12 41215307 41215387 -80042143 + CT-rich Low_complexity Low_complexity 1 80 0 3 899 1112 65 129 12 chr12 41215387 41215557 -80041973 - B2_Mm2 SINE B2 -1 194 5 3 899 434 303 197 0 chr12 41215735 41215913 -80041617 - B3 SINE B2 -3 213 1 3 899 300 243 0 14 chr12 41216189 41216260 -80041270 - B1F SINE Alu -63 86 17 3 899 232 357 47 0 chr12 41216635 41216764 -80040766 - Charlie5 DNA MER1_type -2489 135 1 3 899 371 273 57 25 chr12 41221817 41221975 -80035555 + MIR SINE MIR 8 170 -92 3 899 308 286 424 32 chr12 41222531 41222844 -80034686 + Charlie4a DNA MER1_type 71 506 -2 3 899 499 282 34 27 chr12 41223834 41223980 -80033550 - RSINE1 SINE B4 -18 147 1 3 899 217 333 0 0 chr12 41224000 41224048 -80033482 + ID_B1 SINE B4 88 135 -89 3 899 322 148 16 0 chr12 41224466 41224527 -80033003 - B2_Mm2 SINE B2 -133 62 1 3 899 1210 48 7 0 chr12 41227150 41227296 -80030234 - B1_Mm SINE Alu 0 147 1 3 899 21 0 0 0 chr12 41227737 41227758 -80029772 + AT_rich Low_complexity Low_complexity 1 21 0 3 899 1107 259 71 41 chr12 41228036 41228375 -80029155 + ORR1E LTR MaLR 1 349 -10 3 899 920 141 215 5 chr12 41228526 41228712 -80028818 + URR1A DNA MER1_type 2 226 0 3 899 591 291 0 7 chr12 41229550 41229692 -80027838 + ORR1E LTR MaLR 6 146 -213 3 899 319 309 94 8 chr12 41229704 41229831 -80027699 - MLT2C2 LTR ERVL -326 138 1 3 899 475 291 118 5 chr12 41230763 41231253 -80026277 + L1M2 LINE L1 5085 5632 -680 3 899 297 290 9 18 chr12 41231798 41231907 -80025623 + (CATATA)n Simple_repeat Simple_repeat 4 111 0 3 899 702 295 72 39 chr12 41232586 41232918 -80024612 - MLT1A LTR MaLR -31 343 1 3 899 204 40 0 0 chr12 41233141 41233166 -80024364 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 899 525 325 54 12 chr12 41233168 41233336 -80024194 - B3A SINE B2 -23 175 1 3 899 215 369 103 41 chr12 41233414 41233609 -80023921 + L3 LINE CR1 3919 4125 -364 3 899 294 284 102 67 chr12 41233646 41233860 -80023670 - MIRc SINE MIR -30 238 7 3 899 231 258 0 57 chr12 41233932 41234002 -80023528 - Kanga1a DNA Tc2 -5 749 684 3 899 428 260 89 8 chr12 41236591 41236715 -80020815 + B1_Mm SINE Alu 2 135 -12 3 899 432 319 130 42 chr12 41237324 41237563 -80019967 - B4A SINE B4 0 292 33 3 899 375 23 0 0 chr12 41237567 41237611 -80019919 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 899 297 0 0 0 chr12 41237611 41237644 -80019886 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 899 228 333 30 50 chr12 41239445 41239546 -80017984 - L2c LINE L2 -12 3375 3277 3 899 251 344 48 8 chr12 41240776 41240902 -80016628 + L2b LINE L2 3051 3181 -194 3 899 266 270 60 0 chr12 41241248 41241348 -80016182 - L1MC4a LINE L1 -62 7820 7715 3 899 765 300 72 14 chr12 41241538 41241954 -80015576 - L1MD2 LINE L1 -396 5963 5524 3 899 204 111 0 0 chr12 41242082 41242118 -80015412 + (T)n Simple_repeat Simple_repeat 1 36 0 3 899 306 50 0 0 chr12 41242290 41242330 -80015200 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 899 411 285 93 62 chr12 41242334 41242495 -80015035 - B3A SINE B2 -30 168 3 3 899 291 313 51 17 chr12 41242950 41243067 -80014463 - MIR SINE MIR -106 156 36 3 899 620 315 99 8 chr12 41244055 41244308 -80013222 + B4 SINE B4 1 276 -16 3 899 203 0 37 0 chr12 41244501 41244528 -80013002 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 3 899 3520 111 78 0 chr12 41244541 41245083 -80012447 - MT2B2 LTR ERVL 0 584 1 3 899 180 0 0 0 chr12 41245608 41245628 -80011902 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 899 507 33 0 0 chr12 41245628 41245688 -80011842 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 899 747 229 7 7 chr12 41245714 41245859 -80011671 + ID_B1 SINE B4 78 222 -2 3 899 296 350 10 0 chr12 41247934 41248034 -80009496 - MIR SINE MIR -78 184 84 3 899 485 239 35 28 chr12 41249570 41249712 -80007818 - Tigger9b DNA MER2_type -86 538 396 3 899 762 274 97 4 chr12 41249745 41249983 -80007547 - Tigger9b DNA MER2_type -364 260 1 3 899 382 270 55 11 chr12 41250456 41250723 -80006807 + L1MB5 LINE L1 5814 6132 -48 3 899 2297 52 0 0 chr12 41250731 41251018 -80006512 + L1Md_A LINE L1 6296 6582 0 3 899 702 241 174 12 chr12 41251236 41251408 -80006122 + B3 SINE B2 8 207 -9 3 899 4231 143 16 8 chr12 41251563 41252424 -80005106 - Lx5 LINE L1 -1094 5956 5075 3 899 5157 132 13 11 chr12 41252420 41253281 -80004249 + Lx5 LINE L1 4223 5085 -792 3 899 315 0 0 0 chr12 41253284 41253319 -80004211 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 899 824 328 135 9 chr12 41253321 41253526 -80004004 + Charlie1a DNA MER1_type 230 460 -995 3 899 210 37 0 0 chr12 41253526 41253553 -80003977 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 899 824 328 135 9 chr12 41253553 41253784 -80003746 + Charlie1a DNA MER1_type 461 720 -735 3 899 351 0 0 0 chr12 41253800 41253839 -80003691 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 899 924 87 8 0 chr12 41253852 41253979 -80003551 - B2_Mm1a SINE B2 -65 128 1 3 899 429 266 124 8 chr12 41254379 41254508 -80003022 + B1F SINE Alu 5 148 -1 3 899 310 91 23 0 chr12 41255330 41255374 -80002156 - HAL1-3A_ME LINE L1 -852 2006 1962 3 899 210 128 0 0 chr12 41256172 41256211 -80001319 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 3 899 447 162 0 0 chr12 41258365 41258445 -79999085 + CT-rich Low_complexity Low_complexity 3 82 0 3 899 347 371 16 81 chr12 41258615 41258800 -79998730 - B4A SINE B4 -118 174 2 3 899 767 289 40 13 chr12 41258872 41259100 -79998430 + B4A SINE B4 57 290 -2 3 899 377 311 41 29 chr12 41259157 41259329 -79998201 + RMER5 LTR ERV1 260 433 -101 3 899 694 344 92 3 chr12 41259350 41259653 -79997877 - MLT1B LTR MaLR -6 384 55 3 899 308 161 16 0 chr12 41260002 41260064 -79997466 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 899 411 21 0 0 chr12 41260148 41260196 -79997334 + (TTTTA)n Simple_repeat Simple_repeat 4 51 0 4 899 1164 103 0 0 chr12 41263296 41263452 -79994078 + B2_Mm2 SINE B2 1 156 -39 4 899 282 29 0 0 chr12 41263453 41263488 -79994042 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 4 899 24 32 0 0 chr12 41263535 41263566 -79993964 + AT_rich Low_complexity Low_complexity 1 31 0 4 899 210 91 0 0 chr12 41263570 41263603 -79993927 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 899 295 240 300 0 chr12 41263604 41263704 -79993826 - RSINE1 SINE B4 -30 135 6 4 899 1205 55 0 0 chr12 41263825 41263971 -79993559 - B1_Mus1 SINE Alu -1 147 2 4 899 185 269 0 19 chr12 41264101 41264154 -79993376 - MIR SINE MIR -38 224 173 4 899 268 298 192 32 chr12 41264159 41264315 -79993215 - MLT1A LTR MaLR -5 369 189 4 899 1835 206 54 10 chr12 41264366 41264758 -79992772 - MTD LTR MaLR 0 419 11 4 899 288 0 0 0 chr12 41265767 41265799 -79991731 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 899 279 203 0 0 chr12 41265850 41265914 -79991616 + GA-rich Low_complexity Low_complexity 2 65 0 4 899 450 0 0 0 chr12 41266275 41266325 -79991205 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 899 844 299 50 7 chr12 41266332 41266612 -79990918 - B4A SINE B4 0 292 1 4 899 1630 161 46 37 chr12 41266671 41266994 -79990536 - ORR1A2 LTR MaLR 0 327 2 4 899 1075 203 29 5 chr12 41267012 41267220 -79990310 + B3 SINE B2 1 213 -3 4 899 573 286 79 0 chr12 41267283 41267423 -79990107 - RSINE1 SINE B4 -13 152 2 4 899 184 262 48 16 chr12 41267536 41267598 -79989932 - L2c LINE L2 -73 3314 3251 4 899 29 70 0 0 chr12 41268126 41268183 -79989347 + AT_rich Low_complexity Low_complexity 1 57 0 4 899 27 29 0 0 chr12 41268298 41268332 -79989198 + AT_rich Low_complexity Low_complexity 1 34 0 4 899 246 291 103 76 chr12 41268662 41268807 -79988723 - L2b LINE L2 -2 3373 3225 4 899 524 193 9 0 chr12 41269147 41269261 -79988269 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 899 334 164 0 25 chr12 41269694 41269813 -79987717 + (TCTA)n Simple_repeat Simple_repeat 1 116 0 4 899 487 233 175 26 chr12 41269994 41270034 -79987496 - CYRA11_Mm Unknown Y-chromosome -235 382 218 4 899 844 134 14 0 chr12 41270034 41270176 -79987354 + URR1A DNA MER1_type 83 226 0 4 899 487 233 175 26 chr12 41270176 41270188 -79987342 - CYRA11_Mm Unknown Y-chromosome -235 217 160 4 899 1885 131 14 69 chr12 41270839 41271185 -79986345 - ORR1A4 LTR MaLR 0 329 3 4 899 198 209 0 0 chr12 41275066 41275109 -79982421 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 899 282 290 110 0 chr12 41275371 41275471 -79982059 - PB1D7 SINE Alu -7 113 3 4 899 253 246 16 16 chr12 41276212 41276274 -79981256 - ID4 SINE ID -11 72 11 4 899 22 0 0 0 chr12 41276363 41276385 -79981145 + AT_rich Low_complexity Low_complexity 1 22 0 4 899 501 127 0 0 chr12 41276790 41276869 -79980661 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 899 276 289 40 60 chr12 41277246 41277397 -79980133 - MIRb SINE MIR -17 251 104 4 899 227 276 64 26 chr12 41277403 41277481 -79980049 + B4A SINE B4 2 82 -210 4 899 239 277 105 38 chr12 41278114 41278219 -79979311 + MLT1A LTR MaLR 259 370 -4 4 899 1691 226 30 14 chr12 41279383 41279747 -79977783 + MTD LTR MaLR 1 370 -49 4 899 35 83 0 0 chr12 41279753 41279837 -79977693 + AT_rich Low_complexity Low_complexity 1 84 0 4 899 1107 118 18 6 chr12 41279837 41280008 -79977522 - B2_Mm2 SINE B2 -21 174 2 4 899 330 326 64 67 chr12 41280861 41281144 -79976386 - L1MC5 LINE L1 -774 7187 6906 4 899 238 182 0 0 chr12 41281229 41281273 -79976257 + MLT1H LTR MaLR 504 547 -2 4 899 295 342 33 0 chr12 41282265 41282385 -79975145 - MLT1F2 LTR MaLR -2 558 435 4 899 210 200 18 18 chr12 41282884 41282940 -79974590 + CT-rich Low_complexity Low_complexity 4 59 0 4 899 3968 93 6 22 chr12 41283096 41283644 -79973886 - L1_Mus3 LINE L1 -2 6636 6098 4 899 447 241 49 35 chr12 41285005 41285147 -79972383 + B1_Mus2 SINE Alu 3 146 -1 4 899 291 264 9 78 chr12 41286196 41286311 -79971219 - MER53 DNA hAT -70 123 17 4 899 21 57 0 0 chr12 41286362 41286397 -79971133 + AT_rich Low_complexity Low_complexity 1 35 0 4 899 289 315 21 0 chr12 41286942 41287040 -79970490 - B1F SINE Alu -8 112 4 4 112 4614 141 12 31 chr12 41287121 41287863 -79969667 - Lx4A LINE L1 -1 7057 6330 4 900 318 87 0 0 chr12 41287903 41287949 -79969581 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 900 345 62 0 0 chr12 41287949 41287997 -79969533 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 900 841 271 45 79 chr12 41287997 41288514 -79969016 - L1M1 LINE L1 -523 5780 5282 4 900 309 68 0 0 chr12 41289019 41289063 -79968467 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 900 288 0 0 0 chr12 41290256 41290288 -79967242 + (A)n Simple_repeat Simple_repeat 1 32 0 4 900 213 154 0 0 chr12 41290466 41290505 -79967025 + GA-rich Low_complexity Low_complexity 2 40 0 4 900 354 98 0 0 chr12 41292513 41292564 -79964966 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 900 263 284 77 54 chr12 41292599 41292729 -79964801 + MER46C DNA MER2_type 202 334 -4 4 900 198 103 0 0 chr12 41292898 41292927 -79964603 + (T)n Simple_repeat Simple_repeat 1 29 0 4 900 273 119 0 0 chr12 41293074 41293116 -79964414 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 900 443 250 0 12 chr12 41293161 41293246 -79964284 + ID_B1 SINE B4 136 219 -5 4 900 254 161 59 47 chr12 41293261 41293346 -79964184 + (CAGAGA)n Simple_repeat Simple_repeat 1 86 0 4 900 304 333 0 0 chr12 41293827 41293920 -79963610 + CT-rich Low_complexity Low_complexity 3 95 0 4 900 610 160 114 32 chr12 41294857 41294980 -79962550 + B1_Mur2 SINE Alu 13 145 -4 4 900 241 324 0 0 chr12 41295274 41295345 -79962185 - MIRb SINE MIR -65 203 133 4 900 470 241 93 17 chr12 41296893 41297011 -79960519 - B4A SINE B4 -4 288 162 4 900 198 258 14 101 chr12 41297052 41297121 -79960409 + MER5B DNA MER1_type 52 114 -64 4 900 190 349 81 5 chr12 41297206 41297308 -79960222 - L2a LINE L2 -18 3408 3244 4 900 252 0 0 0 chr12 41297390 41297418 -79960112 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 900 180 0 0 0 chr12 41297420 41297440 -79960090 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 4 900 786 269 127 41 chr12 41297702 41297946 -79959584 - MTEa LTR MaLR -114 265 1 4 900 740 124 35 0 chr12 41298159 41298272 -79959258 - B1_Mur2 SINE Alu -24 125 9 4 900 260 315 0 128 chr12 41298284 41298433 -79959097 - MLT1B LTR MaLR -148 242 113 4 900 300 275 163 21 chr12 41298441 41298582 -79958948 - MLT1C LTR MaLR -273 194 34 4 900 1218 58 0 0 chr12 41298683 41298820 -79958710 - B1_Mus2 SINE Alu -10 137 1 4 900 363 23 0 0 chr12 41299584 41299628 -79957902 + (CAAAC)n Simple_repeat Simple_repeat 2 45 0 4 900 255 261 14 14 chr12 41300575 41300645 -79956885 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 4 900 327 243 0 0 chr12 41300836 41300910 -79956620 - MER103 DNA DNA -44 122 49 4 900 204 125 0 0 chr12 41301532 41301564 -79955966 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 900 604 289 132 17 chr12 41301646 41302055 -79955475 - L1MB2 LINE L1 -26 6145 5690 4 900 207 0 0 0 chr12 41302180 41302203 -79955327 + (T)n Simple_repeat Simple_repeat 1 23 0 4 900 281 315 52 35 chr12 41302417 41302532 -79954998 + MTEb LTR MaLR 260 376 -3 4 900 299 25 25 0 chr12 41303297 41303337 -79954193 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 4 900 204 297 16 0 chr12 41303367 41303431 -79954099 + CT-rich Low_complexity Low_complexity 4 68 0 4 900 767 71 0 0 chr12 41304140 41304239 -79953291 + B1_Mur4 SINE Alu 42 140 -10 4 900 389 20 20 0 chr12 41304239 41304289 -79953241 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 4 900 218 105 26 0 chr12 41304324 41304362 -79953168 + (CAA)n Simple_repeat Simple_repeat 1 39 0 4 900 596 321 105 52 chr12 41304590 41305037 -79952493 - Charlie7 DNA MER1_type -1933 679 209 4 900 665 266 25 12 chr12 41305066 41305226 -79952304 - RSINE1 SINE B4 0 165 4 4 900 23 68 0 0 chr12 41305722 41305766 -79951764 + AT_rich Low_complexity Low_complexity 1 44 0 4 900 1745 47 0 0 chr12 41305879 41306072 -79951458 - B2_Mm1t SINE B2 0 193 1 4 900 381 185 8 16 chr12 41308010 41308136 -79949394 + (TG)n Simple_repeat Simple_repeat 2 126 0 4 900 183 114 0 0 chr12 41308887 41308922 -79948608 + (T)n Simple_repeat Simple_repeat 1 35 0 4 900 977 175 82 9 chr12 41309174 41309393 -79948137 - Lx LINE L1 0 6654 6420 4 900 1008 233 5 5 chr12 41309497 41309700 -79947830 + B3 SINE B2 1 203 -13 4 900 1267 209 165 16 chr12 41310356 41310677 -79946853 + ORR1D2 LTR MaLR 2 370 0 4 900 225 253 214 23 chr12 41310836 41311135 -79946395 - L1MEc LINE L1 -3663 2656 2301 4 900 233 281 220 5 chr12 41311338 41311538 -79945992 - L1MEc LINE L1 -5483 917 675 4 900 204 276 149 0 chr12 41312506 41312593 -79944937 - MIR SINE MIR -64 144 45 4 900 823 249 10 5 chr12 41313243 41313449 -79944081 - Lx7 LINE L1 -347 7349 7143 4 900 1051 181 38 46 chr12 41313496 41313734 -79943796 + Lx7 LINE L1 7461 7696 0 4 900 1013 150 7 0 chr12 41314070 41314217 -79943313 - B1_Mur3 SINE Alu 0 149 2 4 900 306 0 0 0 chr12 41314696 41314730 -79942800 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 900 244 356 0 0 chr12 41314732 41314805 -79942725 - ID4 SINE ID -9 74 2 5 900 1316 158 46 18 chr12 41315482 41315701 -79941829 - URR1B DNA MER1_type 0 225 1 5 900 235 333 0 0 chr12 41316359 41316428 -79941102 - ID4_ SINE ID -13 70 2 5 900 233 258 42 31 chr12 41316503 41316599 -79940931 + L1ME2 LINE L1 5432 5528 -651 5 900 559 216 8 33 chr12 41316685 41316805 -79940725 + PB1D10 SINE Alu 1 117 0 5 900 2834 149 9 57 chr12 41316836 41317361 -79940169 + RMER1B Other Other 563 1062 -4 5 900 415 280 98 38 chr12 41317582 41317769 -79939761 + MER2 DNA MER2_type 99 297 -48 5 900 369 292 73 60 chr12 41317794 41318027 -79939503 + L1ME2 LINE L1 5887 6122 -42 5 900 405 0 0 0 chr12 41318027 41318072 -79939458 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 900 435 331 45 85 chr12 41318258 41318789 -79938741 - HAL1b LINE L1 -614 1395 886 5 900 319 344 121 16 chr12 41319152 41319400 -79938130 - HAL1b LINE L1 -1561 448 175 5 900 872 325 68 0 chr12 41319917 41320182 -79937348 - B4 SINE B4 -4 288 6 5 900 197 132 0 26 chr12 41321046 41321085 -79936445 + T-rich Low_complexity Low_complexity 3 40 0 5 900 216 67 0 0 chr12 41321658 41321688 -79935842 + (C)n Simple_repeat Simple_repeat 1 30 0 5 900 216 186 0 63 chr12 41322914 41322977 -79934553 + GA-rich Low_complexity Low_complexity 1 59 0 5 900 249 280 27 0 chr12 41324017 41324092 -79933438 - ID4 SINE ID -4 79 3 5 900 491 265 45 5 chr12 41324108 41324245 -79933285 - B1F SINE Alu -9 140 1 5 900 744 297 151 32 chr12 41325080 41325418 -79932112 - MTEb LTR MaLR -1 378 1 5 900 261 57 0 0 chr12 41325889 41325924 -79931606 + (TCTCC)n Simple_repeat Simple_repeat 1 35 0 5 900 387 342 49 86 chr12 41325924 41326228 -79931302 - ORR1E LTR MaLR -66 293 1 5 900 1395 124 0 10 chr12 41326971 41327167 -79930363 + B2_Mm2 SINE B2 1 194 -1 5 900 450 204 0 0 chr12 41327201 41327299 -79930231 + CT-rich Low_complexity Low_complexity 3 100 0 5 900 1165 241 56 25 chr12 41327997 41328316 -79929214 + Lx7 LINE L1 6950 7278 -418 5 900 334 233 190 103 chr12 41328503 41328871 -79928659 + RMER10A LTR ERVL 18 417 -25 5 900 393 268 10 0 chr12 41328875 41328972 -79928558 + Lx7 LINE L1 7270 7367 -329 5 900 648 120 0 0 chr12 41328972 41329072 -79928458 + (TTCC)n Simple_repeat Simple_repeat 3 102 0 5 900 26 0 0 0 chr12 41329082 41329108 -79928422 + AT_rich Low_complexity Low_complexity 1 26 0 5 900 1285 210 42 33 chr12 41329143 41329154 -79928376 + Lx7 LINE L1 7356 7366 -330 5 900 1820 21 0 0 chr12 41329154 41329347 -79928183 - B2_Mm1t SINE B2 0 193 1 5 900 1285 210 42 33 chr12 41329347 41329670 -79927860 + Lx7 LINE L1 7367 7693 -3 5 900 323 211 97 44 chr12 41329703 41329817 -79927713 - MER58B DNA MER1_type -156 185 66 5 900 520 228 20 0 chr12 41329821 41329922 -79927608 + PB1D10 SINE Alu 10 112 -5 5 900 1320 71 6 0 chr12 41330236 41330406 -79927124 - L1_Mus2 LINE L1 0 6566 6396 5 900 227 31 31 0 chr12 41330974 41331006 -79926524 + (ATG)n Simple_repeat Simple_repeat 3 35 0 5 900 203 264 38 0 chr12 41331026 41331079 -79926451 + L2b LINE L2 3298 3352 -23 5 900 528 126 6 25 chr12 41331373 41331470 -79926060 - RLTR26 LTR ERVK -797 92 1 5 900 460 317 124 40 chr12 41331583 41332082 -79925448 - L2 LINE L2 -573 2846 2306 5 900 451 184 29 0 chr12 41333014 41333117 -79924413 - L1MA5 LINE L1 0 6300 6195 5 900 234 297 130 23 chr12 41333458 41333589 -79923941 + MIRb SINE MIR 46 190 -78 5 900 895 191 18 0 chr12 41333933 41334101 -79923429 - RMER10A LTR ERVL -271 171 1 5 900 1393 221 138 82 chr12 41334280 41334694 -79922836 + RLTR41 LTR ERV1 10 446 0 5 900 440 233 12 0 chr12 41334805 41334891 -79922639 - B3 SINE B2 -128 88 2 5 900 498 290 48 61 chr12 41335032 41335197 -79922333 + RSINE1 SINE B4 3 165 0 5 900 21 0 0 0 chr12 41335236 41335257 -79922273 + AT_rich Low_complexity Low_complexity 1 21 0 5 900 799 327 14 14 chr12 41337625 41337907 -79919623 - B4 SINE B4 -8 284 3 5 900 5645 85 25 11 chr12 41338602 41339388 -79918142 - Lx LINE L1 -2 6652 5856 5 900 303 218 90 0 chr12 41339642 41339720 -79917810 - L2a LINE L2 -1 3425 3341 5 900 276 30 0 0 chr12 41340997 41341030 -79916500 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 900 234 0 0 0 chr12 41341525 41341551 -79915979 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 900 252 0 0 0 chr12 41341795 41341823 -79915707 + (T)n Simple_repeat Simple_repeat 1 28 0 5 900 253 300 22 11 chr12 41342287 41342378 -79915152 - LTR16A LTR ERVL -263 188 97 5 900 1064 269 146 14 chr12 41343040 41343410 -79914120 - MTD LTR MaLR 0 419 1 5 900 213 159 0 0 chr12 41349111 41349155 -79908375 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 5 900 485 225 53 18 chr12 41349984 41350097 -79907433 + PB1D10 SINE Alu 1 117 0 5 900 270 73 0 0 chr12 41351077 41351118 -79906412 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 900 228 302 16 0 chr12 41351163 41351226 -79906304 - RSINE1 SINE B4 -71 94 31 5 900 23 68 0 0 chr12 41351613 41351657 -79905873 + AT_rich Low_complexity Low_complexity 1 44 0 5 900 432 302 22 0 chr12 41351865 41352004 -79905526 + B1F SINE Alu 1 142 -7 5 900 2959 59 46 8 chr12 41352034 41352426 -79905104 - MTB_Mm LTR MaLR 0 407 1 5 900 432 312 21 28 chr12 41352526 41352668 -79904862 + B1F2 SINE Alu 9 149 0 5 900 313 381 19 19 chr12 41353367 41353525 -79904005 + RSINE1 SINE B4 4 161 -4 5 900 673 203 53 0 chr12 41353558 41353691 -79903839 + B1_Mur1 SINE Alu 1 140 -9 5 900 231 296 14 14 chr12 41353777 41353849 -79903681 - RMER30 DNA MER1_type -19 183 112 5 900 23 0 0 0 chr12 41354297 41354320 -79903210 + AT_rich Low_complexity Low_complexity 1 23 0 5 900 566 243 66 51 chr12 41354592 41354865 -79902665 - L1_Mur3 LINE L1 -6426 1286 1010 5 900 1005 289 36 53 chr12 41355012 41355437 -79902093 - MTE2a LTR MaLR -2 417 1 5 900 306 73 0 0 chr12 41355489 41355530 -79902000 + (T)n Simple_repeat Simple_repeat 1 41 0 5 900 736 263 10 5 chr12 41355542 41355748 -79901782 - B3 SINE B2 -7 209 3 5 900 682 159 111 22 chr12 41356466 41356477 -79901053 - B1_Mus1 SINE Alu 0 148 139 5 900 333 47 0 0 chr12 41356477 41356520 -79901010 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 900 682 159 111 22 chr12 41356520 41356643 -79900887 - B1_Mus1 SINE Alu -10 138 2 5 900 926 157 7 0 chr12 41358525 41358672 -79898858 + B1_Mur4 SINE Alu 3 150 0 5 900 294 299 23 0 chr12 41360348 41360461 -79897069 - B1F SINE Alu -3 117 1 5 900 861 158 163 31 chr12 41361345 41361541 -79895989 + URR1A DNA MER1_type 5 226 0 5 900 186 43 0 0 chr12 41363770 41363793 -79893737 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 900 758 176 20 34 chr12 41363796 41363943 -79893587 - B1_Mus2 SINE Alu 0 147 3 5 900 258 370 73 37 chr12 41365367 41365558 -79891972 - MLT1M LTR MaLR -466 206 9 5 900 773 177 7 39 chr12 41367344 41367497 -79890033 + B1_Mur3 SINE Alu 2 149 0 5 900 2154 170 8 16 chr12 41367894 41368261 -79889269 - ORR1B2 LTR MaLR 0 379 1 5 900 325 258 167 31 chr12 41368781 41368877 -79888653 + ID_B1 SINE B4 8 116 -108 5 900 197 220 0 57 chr12 41370041 41370094 -79887436 - MIR3 SINE MIR -33 175 126 5 900 279 140 0 0 chr12 41370841 41370891 -79886639 + (TCC)n Simple_repeat Simple_repeat 2 51 0 5 900 6149 120 23 5 chr12 41370907 41371835 -79885695 - Lx4A LINE L1 -2 7056 6113 5 900 647 226 27 70 chr12 41372563 41372749 -79884781 - MER5B DNA MER1_type 0 178 1 5 900 568 161 17 8 chr12 41373147 41373266 -79884264 + (TATATG)n Simple_repeat Simple_repeat 2 121 0 5 900 387 220 0 0 chr12 41374092 41374224 -79883306 + (TG)n Simple_repeat Simple_repeat 1 132 0 5 900 207 314 161 11 chr12 41374269 41374356 -79883174 + L2b LINE L2 3265 3364 -11 5 900 190 292 194 30 chr12 41374388 41374455 -79883075 + L2b LINE L2 3288 3365 -10 5 900 303 235 0 121 chr12 41374837 41374953 -79882577 - ID4 SINE ID -35 117 16 5 900 1209 117 0 0 chr12 41374998 41375265 -79882265 + (CA)n Simple_repeat Simple_repeat 1 267 0 5 900 302 136 0 0 chr12 41375267 41375311 -79882219 + HAL1-3A_ME LINE L1 1975 2018 -840 5 900 1314 78 0 0 chr12 41375313 41375493 -79882037 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 900 363 238 105 21 chr12 41375521 41375654 -79881876 - ID_B1 SINE B4 -111 181 38 5 900 207 0 0 0 chr12 41375819 41375842 -79881688 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 900 726 248 0 0 chr12 41377340 41377489 -79880041 - B1_Mur2 SINE Alu 0 149 1 5 900 571 265 141 0 chr12 41378539 41378724 -79878806 - MTD LTR MaLR -13 406 196 5 900 3177 57 2 0 chr12 41378738 41379139 -79878391 - L1_Mus1 LINE L1 0 6567 6166 5 900 413 37 0 0 chr12 41379139 41379193 -79878337 + L1_Mm LINE L1 4532 4585 -1298 5 900 1080 218 14 0 chr12 41379193 41379404 -79878126 - MTD LTR MaLR -205 214 1 5 900 286 293 60 75 chr12 41379575 41379708 -79877822 - RSINE1 SINE B4 -19 146 16 5 900 353 381 18 49 chr12 41379758 41379921 -79877609 - RSINE1 SINE B4 -6 159 2 5 900 355 304 106 16 chr12 41380595 41380756 -79876774 - MIR SINE MIR -4 264 86 5 900 222 118 0 0 chr12 41381683 41381717 -79875813 + (T)n Simple_repeat Simple_repeat 1 34 0 5 900 1148 68 0 0 chr12 41381717 41381863 -79875667 - B1_Mm SINE Alu 0 147 2 5 900 181 375 0 0 chr12 41382154 41382218 -79875312 + MIR SINE MIR 10 73 -189 5 900 315 0 0 0 chr12 41384069 41384104 -79873426 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 900 760 184 29 0 chr12 41384704 41384840 -79872690 - B1F2 SINE Alu -1 148 9 5 900 4951 51 18 3 chr12 41385003 41385629 -79871901 - L1_Mus1 LINE L1 0 6567 5933 6 900 3860 55 21 0 chr12 41385629 41386232 -79871298 + L1_Mus1 LINE L1 5314 5939 -628 6 900 612 294 115 8 chr12 41387033 41387553 -79869977 - L1_Rod LINE L1 -522 5769 5109 6 900 348 133 0 0 chr12 41387742 41387802 -79869728 + (CCA)n Simple_repeat Simple_repeat 1 60 0 6 900 21 0 0 0 chr12 41388439 41388460 -79869070 + AT_rich Low_complexity Low_complexity 1 21 0 6 900 272 236 148 19 chr12 41388956 41389064 -79868466 + B1_Mur3 SINE Alu 1 122 -27 6 900 220 307 146 23 chr12 41389064 41389082 -79868448 + ID_B1 SINE B4 82 223 -1 6 900 225 159 0 0 chr12 41389086 41389130 -79868400 + G-rich Low_complexity Low_complexity 2 45 0 6 900 841 286 130 24 chr12 41389146 41389555 -79867975 - MER34A1 LTR ERV1 -133 454 3 6 900 328 364 37 16 chr12 41390646 41390833 -79866697 + MIR SINE MIR 1 191 -71 6 900 913 164 0 20 chr12 41391618 41391767 -79865763 + B1_Mur3 SINE Alu 2 147 -2 6 900 400 216 20 9 chr12 41393250 41393344 -79864186 - PB1D7 SINE Alu -21 127 33 6 900 369 336 38 15 chr12 41396573 41396706 -79860824 - B1F SINE Alu -3 146 11 6 900 351 354 27 20 chr12 41396575 41396722 -79860808 - ID_B1 SINE B4 -3 221 74 6 900 207 0 0 0 chr12 41396868 41396891 -79860639 + (T)n Simple_repeat Simple_repeat 1 23 0 6 900 304 335 92 49 chr12 41398226 41398411 -79859119 + B4 SINE B4 31 223 -69 6 900 519 264 23 23 chr12 41398297 41398429 -79859101 + B1_Mus2 SINE Alu 10 141 -6 6 900 294 339 35 26 chr12 41398823 41398938 -79858592 - PB1D10 SINE Alu 0 117 2 6 900 1043 278 110 49 chr12 41399799 41400227 -79857303 - MLT1C LTR MaLR -5 462 9 6 900 242 331 170 6 chr12 41400877 41401059 -79856471 - MIRb SINE MIR -30 238 27 6 900 180 0 0 0 chr12 41401555 41401575 -79855955 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 900 201 171 24 0 chr12 41402219 41402260 -79855270 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 6 900 1182 62 0 0 chr12 41402449 41402594 -79854936 + B1_Mus2 SINE Alu 2 146 -1 6 900 246 170 18 54 chr12 41402622 41402678 -79854852 + ID4_ SINE ID 28 81 -2 6 900 230 286 224 8 chr12 41402899 41403033 -79854497 - MIRb SINE MIR -6 262 100 6 900 933 183 430 0 chr12 41405022 41405245 -79852285 + RMER1A Other Other 676 994 -36 6 900 25 83 0 0 chr12 41405613 41405673 -79851857 + AT_rich Low_complexity Low_complexity 1 60 0 6 900 26 64 0 0 chr12 41405716 41405763 -79851767 + AT_rich Low_complexity Low_complexity 1 47 0 6 900 608 267 6 58 chr12 41405915 41406086 -79851444 + RSINE1 SINE B4 1 162 -3 6 900 328 280 206 11 chr12 41407031 41407215 -79850315 - L1MC4 LINE L1 -241 7801 7582 6 900 967 194 57 16 chr12 41407238 41407432 -79850098 + B3 SINE B2 1 202 -14 6 900 423 0 0 0 chr12 41407909 41407956 -79849574 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 900 311 298 60 32 chr12 41408026 41408157 -79849373 - MER34 LTR ERV1 -421 150 10 6 900 267 103 0 0 chr12 41408169 41408208 -79849322 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 900 780 265 51 21 chr12 41408796 41409031 -79848499 + MT2A LTR ERVL 3 244 -289 6 900 304 292 89 24 chr12 41409321 41409444 -79848086 + MLT1A0 LTR MaLR 55 185 -180 6 900 217 253 0 96 chr12 41411112 41411130 -79846400 + B4 SINE B4 70 121 -171 6 900 288 140 34 34 chr12 41411130 41411189 -79846341 + B1_Mus2 SINE Alu 1 59 -88 6 900 192 149 0 0 chr12 41411198 41411245 -79846285 + (GGGAGA)n Simple_repeat Simple_repeat 4 50 0 6 900 376 192 0 76 chr12 41411247 41411326 -79846204 + PB1D9 SINE Alu 42 114 -6 6 900 788 80 19 0 chr12 41412114 41412245 -79845285 + B1_Mus1 SINE Alu 3 148 0 6 900 225 0 0 0 chr12 41412245 41412270 -79845260 + (A)n Simple_repeat Simple_repeat 1 25 0 6 900 305 307 69 59 chr12 41412826 41413030 -79844500 + L1MEd LINE L1 983 1188 -4931 6 900 487 229 50 17 chr12 41414192 41414312 -79843218 - ID_B1 SINE B4 -13 211 88 6 900 235 0 0 54 chr12 41414991 41415028 -79842502 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 900 1029 254 67 54 chr12 41415192 41415563 -79841967 - MTEb LTR MaLR -1 378 3 6 900 207 316 75 12 chr12 41415748 41415828 -79841702 + L2c LINE L2 3252 3336 -51 6 900 377 250 48 7 chr12 41416103 41416222 -79841308 - L1MA7 LINE L1 -9 6282 6163 6 900 195 42 0 0 chr12 41416222 41416246 -79841284 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 900 377 250 48 7 chr12 41416246 41416271 -79841259 - L1MA7 LINE L1 -129 6162 6132 6 900 343 330 0 40 chr12 41416667 41416768 -79840762 - ID_B1 SINE B4 -47 177 81 6 901 180 0 0 0 chr12 41421636 41421656 -79835874 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 901 24 0 0 0 chr12 41421783 41421807 -79835723 + AT_rich Low_complexity Low_complexity 1 24 0 6 901 1694 145 93 3 chr12 41421808 41422099 -79835431 - Lx4A LINE L1 -2 7056 6740 6 901 3295 88 54 2 chr12 41422101 41422602 -79834928 + L1_Mur2 LINE L1 3895 4421 -1456 6 901 541 263 62 23 chr12 41422621 41422925 -79834605 - MER33 DNA MER1_type -4 320 5 6 901 683 182 67 22 chr12 41424293 41424428 -79833102 + B1_Mur2 SINE Alu 2 142 -7 6 901 321 26 0 0 chr12 41424428 41424466 -79833064 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 6 901 357 24 0 0 chr12 41424466 41424507 -79833023 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 6 901 462 83 0 0 chr12 41424509 41424581 -79832949 + (GAAAA)n Simple_repeat Simple_repeat 4 75 0 6 901 865 304 62 27 chr12 41425414 41425752 -79831778 - Lx8 LINE L1 -2 7471 7122 6 901 500 317 14 21 chr12 41425828 41425973 -79831557 + RSINE1 SINE B4 2 145 -20 6 901 666 303 67 18 chr12 41426539 41426764 -79830766 + B4A SINE B4 2 237 -55 6 901 263 164 0 16 chr12 41427491 41427553 -79829977 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 901 429 20 0 0 chr12 41427584 41427634 -79829896 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 901 632 277 97 19 chr12 41427693 41427899 -79829631 + MER2 DNA MER2_type 96 317 -28 6 901 623 256 7 22 chr12 41428026 41428162 -79829368 - B1_Mur1 SINE Alu -15 134 1 6 901 195 42 0 0 chr12 41428533 41428557 -79828973 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 901 652 128 191 22 chr12 41429715 41429851 -79827679 + B2_Mm2 SINE B2 1 159 -36 6 901 542 87 0 12 chr12 41429851 41429933 -79827597 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 901 770 136 38 0 chr12 41430147 41430279 -79827251 + B1_Mus1 SINE Alu 11 147 -1 6 901 24 0 0 0 chr12 41430316 41430340 -79827190 + AT_rich Low_complexity Low_complexity 1 24 0 6 901 912 129 263 6 chr12 41430459 41430638 -79826892 - URR1B DNA MER1_type 0 225 1 6 901 706 206 21 0 chr12 41431967 41432108 -79825422 + B1_Mur3 SINE Alu 5 148 -1 6 901 270 293 113 26 chr12 41432372 41432500 -79825030 - L2a LINE L2 -23 3403 3240 6 901 1232 315 66 11 chr12 41432504 41432941 -79824589 + Tigger7 DNA MER2_type 3 463 -2028 6 901 408 294 65 13 chr12 41432942 41433097 -79824433 + Tigger7 DNA MER2_type 2329 2491 0 6 901 373 339 102 21 chr12 41433123 41433358 -79824172 - L2a LINE L2 -209 3217 2964 6 901 258 322 215 8 chr12 41433431 41433678 -79823852 - L2a LINE L2 -623 2796 2499 6 901 317 396 74 11 chr12 41433790 41433979 -79823551 - MER63A DNA AcHobo -6 204 4 6 901 781 286 120 10 chr12 41433981 41434390 -79823140 - L2a LINE L2 -1091 2328 1875 6 901 660 274 47 39 chr12 41434398 41434630 -79822900 + L1MC1 LINE L1 4517 4750 -1396 6 901 581 293 84 0 chr12 41434636 41434803 -79822727 + ID_B1 SINE B4 2 182 -42 6 901 825 231 122 22 chr12 41434805 41435173 -79822357 + L1MC1 LINE L1 4747 5151 -995 6 901 312 234 107 0 chr12 41435388 41435492 -79822038 + Lx7 LINE L1 6846 6958 -515 6 901 488 196 74 15 chr12 41435487 41435622 -79821908 + Lx9 LINE L1 7257 7399 -245 6 901 556 298 11 3 chr12 41435677 41435882 -79821648 + L1MC1 LINE L1 5805 6004 -1991 6 901 284 235 20 0 chr12 41437613 41437664 -79819866 + PB1D9 SINE Alu 3 54 -66 6 901 309 224 106 53 chr12 41438185 41438298 -79819232 - PB1 SINE Alu -8 119 1 6 901 2892 55 28 13 chr12 41438426 41438816 -79818714 + MTA_Mm LTR MaLR 1 396 0 6 901 182 355 56 9 chr12 41439055 41439163 -79818367 + L2c LINE L2 3056 3168 -219 6 901 225 154 76 15 chr12 41442369 41442435 -79815095 + L1ME3B LINE L1 6148 6217 -23 6 901 590 260 64 23 chr12 41442786 41442959 -79814571 - B3A SINE B2 -15 183 4 6 901 342 0 0 0 chr12 41442984 41443022 -79814508 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 901 231 366 21 21 chr12 41443027 41443122 -79814408 - RSINE1 SINE B4 -2 163 69 6 901 17776 194 63 50 chr12 41444007 41446849 -79810681 - Lx6 LINE L1 0 7460 4590 6 901 4321 19 0 0 chr12 41446849 41447331 -79810199 - LTRIS_Mm LTR ERV1 0 482 1 6 901 17776 160 94 59 chr12 41447331 41447637 -79809893 - Lx6 LINE L1 -1291 4589 4280 6 901 255 125 0 0 chr12 41447637 41447677 -79809853 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 901 17776 169 92 59 chr12 41447677 41448839 -79808691 - Lx6 LINE L1 -1601 4279 3038 6 901 524 270 0 18 chr12 41448839 41448952 -79808578 - B1_Mur4 SINE Alu -37 113 3 6 901 17776 169 92 59 chr12 41448952 41450966 -79806564 - Lx6 LINE L1 -1601 3037 882 6 901 257 0 30 0 chr12 41450966 41450999 -79806531 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 901 3164 244 82 60 chr12 41450999 41451708 -79805822 - Lx6 LINE L1 -6847 881 104 6 901 189 107 0 0 chr12 41453037 41453065 -79804465 + (T)n Simple_repeat Simple_repeat 1 28 0 6 901 238 284 86 0 chr12 41453458 41453539 -79803991 - MLT1D LTR MaLR 0 505 418 6 901 365 296 87 37 chr12 41453560 41453852 -79803678 - MLT1D LTR MaLR -157 348 1 6 901 196 111 22 22 chr12 41454029 41454075 -79803455 + A-rich Low_complexity Low_complexity 4 49 0 6 901 387 207 219 16 chr12 41454465 41454588 -79802942 + B1F1 SINE Alu 2 149 0 6 901 548 29 14 0 chr12 41457715 41457785 -79799745 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 901 238 217 0 0 chr12 41459064 41459110 -79798420 - PB1D9 SINE Alu -11 109 64 6 901 268 288 27 0 chr12 41459151 41459224 -79798306 + ID2 SINE ID 2 76 -7 6 901 306 0 0 0 chr12 41459250 41459284 -79798246 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 901 260 288 0 0 chr12 41460487 41460546 -79796984 - PB1D7 SINE Alu -61 59 1 7 901 1612 40 0 0 chr12 41461041 41461242 -79796288 - L1Md_A LINE L1 0 6582 6382 7 901 673 329 148 77 chr12 41462067 41462626 -79794904 - MLT1E2 LTR MaLR -4 623 25 7 901 1292 50 16 22 chr12 41462638 41462822 -79794708 + L1Md_F2 LINE L1 6400 6582 0 7 901 23 0 0 0 chr12 41463599 41463622 -79793908 + AT_rich Low_complexity Low_complexity 1 23 0 7 901 465 261 8 50 chr12 41464343 41464464 -79793066 + PB1 SINE Alu 8 123 -4 7 901 1344 240 55 57 chr12 41464653 41464714 -79792816 - ORR1D1 LTR MaLR -3 371 316 7 901 347 0 23 0 chr12 41464714 41464757 -79792773 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 901 1344 240 55 57 chr12 41464757 41465062 -79792468 - ORR1D1 LTR MaLR -59 315 6 7 901 693 205 0 0 chr12 41465503 41465615 -79791915 + B1_Mus2 SINE Alu 1 112 -35 7 901 918 186 0 0 chr12 41465722 41465878 -79791652 + URR1B DNA MER1_type 70 225 0 7 901 318 307 83 69 chr12 41467205 41467422 -79790108 - MLT1D LTR MaLR 0 505 286 7 901 465 19 0 0 chr12 41467422 41467476 -79790054 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 901 252 86 0 0 chr12 41467480 41467515 -79790015 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 901 550 282 14 101 chr12 41468952 41469169 -79788361 + B3A SINE B2 1 198 0 7 901 231 114 0 0 chr12 41469526 41469561 -79787969 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 7 901 615 67 0 0 chr12 41470247 41470336 -79787194 + (TC)n Simple_repeat Simple_repeat 1 89 0 7 901 21 36 0 0 chr12 41470536 41470564 -79786966 + AT_rich Low_complexity Low_complexity 1 28 0 7 901 2192 132 85 0 chr12 41470805 41471168 -79786362 - ORR1B1 LTR MaLR 0 394 1 7 901 1521 142 0 0 chr12 41471244 41471469 -79786061 - URR1B DNA MER1_type 0 225 1 7 901 1252 72 6 0 chr12 41471475 41471642 -79785888 + B2_Mm1a SINE B2 1 168 -25 7 901 213 196 0 0 chr12 41471644 41471690 -79785840 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 7 901 308 225 88 18 chr12 41471860 41471973 -79785557 + HAL1 LINE L1 2230 2350 -157 7 901 234 0 0 0 chr12 41472206 41472232 -79785298 + (TC)n Simple_repeat Simple_repeat 2 27 0 7 901 26 50 0 0 chr12 41472534 41472574 -79784956 + AT_rich Low_complexity Low_complexity 1 40 0 7 901 266 164 0 18 chr12 41473778 41473834 -79783696 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 901 22 35 0 0 chr12 41474950 41474979 -79782551 + AT_rich Low_complexity Low_complexity 1 29 0 7 901 244 307 131 29 chr12 41475029 41475202 -79782328 + MIR3 SINE MIR 23 202 -6 7 901 339 275 0 0 chr12 41475367 41475436 -79782094 - ID2 SINE ID -1 82 14 7 901 24 32 0 0 chr12 41475456 41475487 -79782043 + AT_rich Low_complexity Low_complexity 1 31 0 7 901 1784 193 89 12 chr12 41475674 41476089 -79781441 + Lx7 LINE L1 6950 7396 -300 7 901 923 251 0 0 chr12 41476107 41476290 -79781240 - ORR1E LTR MaLR -175 184 2 7 901 886 228 29 15 chr12 41476404 41476609 -79780921 + B3 SINE B2 5 212 -4 7 901 1244 286 64 52 chr12 41476841 41477410 -79780120 - L1MD1 LINE L1 0 6242 5656 7 901 266 0 29 0 chr12 41477410 41477444 -79780086 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 901 1244 286 64 52 chr12 41477444 41477625 -79779905 - L1MD1 LINE L1 -587 5655 5483 7 901 409 222 51 15 chr12 41477800 41477937 -79779593 - L1MD1 LINE L1 -922 5224 5083 7 901 393 336 69 14 chr12 41478034 41478324 -79779206 - L1MDa LINE L1 -5455 1178 873 7 901 312 91 0 0 chr12 41480460 41480504 -79777026 + (CTG)n Simple_repeat Simple_repeat 3 46 0 7 901 617 314 61 73 chr12 41481135 41481478 -79776052 - ORR1E LTR MaLR -20 339 1 7 901 258 81 0 0 chr12 41482848 41482885 -79774645 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 7 901 1398 55 0 22 chr12 41483022 41483207 -79774323 + B2_Mm2 SINE B2 6 186 -9 7 901 896 224 20 5 chr12 41483403 41483605 -79773925 + Lx6 LINE L1 7224 7428 -32 7 901 1070 273 89 35 chr12 41483857 41484195 -79773335 + MTD LTR MaLR 1 356 -63 7 901 576 280 0 0 chr12 41484340 41484465 -79773065 + B3A SINE B2 1 125 -73 7 901 230 295 117 53 chr12 41484532 41484779 -79772751 - L2 LINE L2 -888 2531 2269 7 901 260 229 0 0 chr12 41485366 41485414 -79772116 - MER46C DNA MER2_type -10 328 281 7 901 284 207 58 47 chr12 41485674 41485760 -79771770 - MLT1A1 LTR MaLR 0 408 322 7 901 361 244 92 196 chr12 41486472 41486635 -79770895 - B1F1 SINE Alu 0 149 4 7 901 1935 146 86 5 chr12 41486839 41487210 -79770320 - RLTR11A2 LTR ERVK -126 401 1 7 901 3327 201 70 49 chr12 41488218 41489013 -79768517 - RLTR40 LTR ERVK -5 812 1 7 901 333 0 0 0 chr12 41489888 41489925 -79767605 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 901 570 54 0 0 chr12 41490548 41490622 -79766908 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 901 195 42 0 0 chr12 41490622 41490646 -79766884 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 901 180 0 0 0 chr12 41491148 41491168 -79766362 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 901 316 225 25 0 chr12 41491645 41491725 -79765805 + L1MA8 LINE L1 6139 6220 -71 7 901 414 139 0 0 chr12 41491725 41491797 -79765733 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 901 520 260 75 70 chr12 41491859 41491885 -79765645 - B2_Mm2 SINE B2 -7 188 160 7 901 471 73 0 0 chr12 41491885 41491953 -79765577 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 901 721 260 75 70 chr12 41491953 41492112 -79765418 - B3A SINE B2 -38 160 2 7 901 759 191 14 7 chr12 41493116 41493264 -79764266 + B1_Mur3 SINE Alu 1 149 0 7 901 222 213 83 21 chr12 41493280 41493328 -79764202 + B1F SINE Alu 7 57 -92 7 901 32 0 0 0 chr12 41494385 41494417 -79763113 + AT_rich Low_complexity Low_complexity 1 32 0 7 901 464 307 0 10 chr12 41494756 41494858 -79762672 + PB1D10 SINE Alu 1 101 -16 7 901 219 88 0 0 chr12 41494872 41494906 -79762624 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 7 901 293 43 43 0 chr12 41495782 41495828 -79761702 + (TCTCTG)n Simple_repeat Simple_repeat 3 50 0 7 901 435 52 0 0 chr12 41495828 41495886 -79761644 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 901 4973 90 8 5 chr12 41496245 41496985 -79760545 + L1_Mm LINE L1 4791 5532 -351 7 901 254 317 92 67 chr12 41497005 41497289 -79760241 - L2 LINE L2 -652 2767 2477 7 901 449 318 0 8 chr12 41497310 41497440 -79760090 + B1F SINE Alu 19 147 -2 7 901 423 332 75 15 chr12 41497740 41497939 -79759591 - L2 LINE L2 -1417 2002 1792 7 901 708 214 38 0 chr12 41499155 41499286 -79758244 + B1_Mur1 SINE Alu 1 136 -13 7 901 186 43 0 0 chr12 41499292 41499315 -79758215 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7 901 577 100 10 10 chr12 41500007 41500108 -79757422 + Lx LINE L1 6552 6652 -2 1 901 25 0 0 0 chr12 41500108 41500133 -79757397 + AT_rich Low_complexity Low_complexity 1 25 0 2 901 797 132 14 0 chr12 41500597 41500741 -79756789 + URR1A DNA MER1_type 81 226 0 3 901 384 290 71 0 chr12 41500749 41500904 -79756626 + MER5A1 DNA MER1_type 1 166 0 4 901 320 271 62 10 chr12 41501191 41501288 -79756242 + B4A SINE B4 188 289 -3 5 901 249 258 16 16 chr12 41501356 41501419 -79756111 - ID4_ SINE ID -18 65 3 6 901 414 0 0 0 chr12 41502409 41502455 -79755075 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 901 3675 137 45 39 chr12 41502604 41503290 -79754240 + RMER6C LTR ERVK 1 690 0 8 901 245 0 86 0 chr12 41503613 41503648 -79753882 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 9 901 234 125 0 0 chr12 41504732 41504780 -79752750 + (CTTTG)n Simple_repeat Simple_repeat 2 49 0 1 901 326 243 188 9 chr12 41504896 41505008 -79752522 + B3A SINE B2 3 134 -64 1 901 24 0 0 0 chr12 41505336 41505360 -79752170 + AT_rich Low_complexity Low_complexity 1 24 0 1 901 249 292 26 0 chr12 41507903 41508016 -79749514 - L1M3 LINE L1 -554 5629 5514 1 901 23 0 0 0 chr12 41508874 41508897 -79748633 + AT_rich Low_complexity Low_complexity 1 23 0 1 901 258 310 14 14 chr12 41509405 41509477 -79748053 + ID SINE ID 12 83 -141 1 901 785 38 0 19 chr12 41509601 41509707 -79747823 + B1_Mus1 SINE Alu 35 138 -10 1 901 240 35 0 0 chr12 41509707 41509736 -79747794 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 901 426 282 53 63 chr12 41510016 41510205 -79747325 - MamGypLTR1a LTR Gypsy -559 225 39 1 901 541 241 49 7 chr12 41510429 41510571 -79746959 + RSINE1 SINE B4 11 158 -7 1 901 21 0 0 0 chr12 41510579 41510600 -79746930 + AT_rich Low_complexity Low_complexity 1 21 0 2 901 792 239 53 14 chr12 41510793 41511001 -79746529 - B3 SINE B2 0 216 1 2 901 614 165 180 8 chr12 41511566 41511688 -79745842 + B1_Mur4 SINE Alu 1 143 -7 2 901 191 177 16 0 chr12 41511691 41511753 -79745777 + GA-rich Low_complexity Low_complexity 2 64 0 2 901 231 204 94 83 chr12 41511835 41511931 -79745599 - L1MC5 LINE L1 -1161 6800 6704 2 901 216 343 38 60 chr12 41512349 41512532 -79744998 + MIRb SINE MIR 82 260 -8 2 901 195 42 0 0 chr12 41512672 41512696 -79744834 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 901 417 294 44 0 chr12 41514423 41514559 -79742971 - B3 SINE B2 -8 208 67 2 901 201 176 0 0 chr12 41517309 41517343 -79740187 + A-rich Low_complexity Low_complexity 1 34 0 2 901 21 0 0 0 chr12 41518366 41518387 -79739143 + AT_rich Low_complexity Low_complexity 1 21 0 2 901 23 54 0 0 chr12 41518442 41518479 -79739051 + AT_rich Low_complexity Low_complexity 1 37 0 3 901 765 0 0 0 chr12 41522495 41522580 -79734950 + (GGCTG)n Simple_repeat Simple_repeat 5 89 0 3 901 234 0 0 0 chr12 41523293 41523319 -79734211 + (CTG)n Simple_repeat Simple_repeat 1 26 0 3 901 21 0 0 0 chr12 41524476 41524497 -79733033 + AT_rich Low_complexity Low_complexity 1 21 0 3 901 186 43 0 0 chr12 41525180 41525203 -79732327 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 901 392 189 198 0 chr12 41525325 41525431 -79732099 + B1_Mur1 SINE Alu 23 149 0 3 901 701 216 43 0 chr12 41525489 41525628 -79731902 - B1_Mm SINE Alu -1 146 2 3 901 426 200 109 45 chr12 41525834 41525944 -79731586 + PB1D10 SINE Alu 1 117 0 3 901 369 0 0 0 chr12 41526158 41526199 -79731331 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 901 584 298 15 40 chr12 41527220 41527419 -79730111 - B3A SINE B2 -3 195 2 3 901 1735 312 101 36 chr12 41527476 41528495 -79729035 - L1MEf LINE L1 -4711 1929 862 4 901 238 288 117 17 chr12 41528829 41528949 -79728581 - L1MEf LINE L1 -6391 156 25 4 901 272 27 0 26 chr12 41529278 41529316 -79728214 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 901 420 20 0 0 chr12 41529325 41529374 -79728156 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 901 713 132 8 0 chr12 41529374 41529495 -79728035 + (GGGAGA)n Simple_repeat Simple_repeat 6 127 0 4 901 649 255 0 25 chr12 41529497 41529654 -79727876 - B3A SINE B2 -45 153 1 4 901 28 48 0 0 chr12 41529686 41529728 -79727802 + AT_rich Low_complexity Low_complexity 1 42 0 4 901 186 103 0 0 chr12 41529728 41529757 -79727773 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 901 517 219 50 28 chr12 41530220 41530361 -79727169 - RSINE1 SINE B4 -19 146 3 4 901 259 234 31 41 chr12 41531074 41531172 -79726358 - L1MB3 LINE L1 -96 6087 5991 4 901 1354 232 105 8 chr12 41531915 41532285 -79725245 - MTD LTR MaLR -12 407 2 4 901 246 136 0 0 chr12 41532285 41532329 -79725201 + (CTAG)n Simple_repeat Simple_repeat 3 46 0 5 901 5126 99 8 16 chr12 41532656 41533394 -79724136 - Lx2A LINE L1 0 7008 6277 5 901 481 252 39 83 chr12 41533847 41534003 -79723527 + RSINE1 SINE B4 17 165 0 5 901 654 282 51 111 chr12 41533997 41534214 -79723316 - MLT1A0 LTR MaLR -35 330 133 5 901 1157 62 7 0 chr12 41534214 41534360 -79723170 - B1_Mus2 SINE Alu 0 147 1 5 901 654 282 51 111 chr12 41534360 41534493 -79723037 - MLT1A0 LTR MaLR -233 132 1 5 901 276 137 0 0 chr12 41535016 41535067 -79722463 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 901 2984 200 47 108 chr12 41535073 41535925 -79721605 - Lx7 LINE L1 -28 7668 6869 5 901 353 105 18 0 chr12 41535925 41535982 -79721548 + 7SK RNA RNA 4 61 -270 5 901 1225 20 0 27 chr12 41536148 41536298 -79721232 + B1_Mm SINE Alu 2 147 0 5 901 183 42 0 0 chr12 41536298 41536322 -79721208 + (A)n Simple_repeat Simple_repeat 1 24 0 5 901 272 286 161 0 chr12 41536323 41536484 -79721046 + Cheshire DNA MER1_type 101 287 -2133 6 901 1083 102 0 0 chr12 41539373 41539520 -79718010 + B1_Mus2 SINE Alu 1 147 0 6 901 481 256 66 0 chr12 41539739 41539860 -79717670 + B1F SINE Alu 1 129 -20 6 901 456 19 0 0 chr12 41539872 41539925 -79717605 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 901 391 219 0 47 chr12 41540186 41540272 -79717258 + MTE2b LTR MaLR 1 82 -297 6 901 442 249 108 69 chr12 41540319 41540358 -79717172 + MTE2b LTR MaLR 163 199 -180 6 901 459 0 0 0 chr12 41540358 41540409 -79717121 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 901 442 249 108 69 chr12 41540409 41540572 -79716958 + MTE2b LTR MaLR 200 373 -6 6 901 293 200 81 137 chr12 41541056 41541253 -79716277 + ORSL DNA Tip100 90 275 0 6 901 453 254 84 52 chr12 41541342 41541533 -79715997 + B3A SINE B2 2 198 0 6 901 23 54 0 0 chr12 41541807 41541844 -79715686 + AT_rich Low_complexity Low_complexity 1 37 0 6 901 400 332 35 43 chr12 41541976 41542206 -79715324 + L1MB5 LINE L1 5618 5845 -329 6 901 306 0 0 0 chr12 41545320 41545354 -79712176 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 7 901 330 187 0 0 chr12 41545355 41545446 -79712084 + (TA)n Simple_repeat Simple_repeat 2 92 0 7 901 225 291 19 37 chr12 41545731 41545838 -79711692 - MIRc SINE MIR -162 106 2 7 901 182 413 33 0 chr12 41546623 41546744 -79710786 + MIR3 SINE MIR 50 174 -34 7 901 336 72 14 28 chr12 41546933 41547004 -79710526 + (TTTTTG)n Simple_repeat Simple_repeat 3 72 0 7 901 196 245 82 0 chr12 41547638 41547687 -79709843 + MIRc SINE MIR 103 155 -113 7 901 225 229 0 62 chr12 41548984 41549049 -79708481 + LTR79 LTR ERVL 311 371 -156 7 112 1372 300 88 45 chr12 41549049 41550134 -79707396 - Lx8 LINE L1 -951 6522 5365 7 902 1414 303 92 31 chr12 41550126 41550767 -79706763 + Lx8 LINE L1 6649 7328 -145 7 902 430 276 102 80 chr12 41551441 41551787 -79705743 - L1MC5 LINE L1 -450 7511 7162 7 902 716 299 0 0 chr12 41551787 41551941 -79705589 + RSINE1 SINE B4 2 155 -10 7 902 303 28 0 0 chr12 41551946 41551982 -79705548 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 902 430 276 102 80 chr12 41551982 41552081 -79705449 - L1MC5 LINE L1 -804 7157 7050 7 902 301 335 86 18 chr12 41552598 41552820 -79704710 - LTR80A LTR ERVL -342 241 5 8 902 1076 182 136 0 chr12 41553304 41553502 -79704028 + URR1B DNA MER1_type 1 225 0 8 902 25 0 0 0 chr12 41554049 41554074 -79703456 + AT_rich Low_complexity Low_complexity 1 25 0 8 902 317 294 68 41 chr12 41554087 41554381 -79703149 - L1MD LINE L1 -2404 5591 5290 8 902 200 35 35 0 chr12 41555840 41555869 -79701661 + (TTGG)n Simple_repeat Simple_repeat 3 32 0 8 902 292 303 148 22 chr12 41557630 41557765 -79699765 + LTR16A LTR ERVL 102 253 -198 8 902 180 0 0 0 chr12 41559666 41559686 -79697844 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 902 348 233 214 79 chr12 41560444 41560584 -79696946 + RSINE1 SINE B4 3 161 -4 8 902 835 188 31 161 chr12 41561505 41561765 -79695765 - URR1A DNA MER1_type 0 226 1 8 902 404 336 21 7 chr12 41567385 41567526 -79690004 + ID_B1 SINE B4 80 222 -2 9 902 596 294 94 68 chr12 41569634 41569900 -79687630 + B4 SINE B4 1 273 -19 9 902 183 80 0 0 chr12 41569909 41569934 -79687596 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 902 262 304 43 17 chr12 41570021 41570138 -79687392 - Charlie8 DNA MER1_type -2276 152 33 9 902 259 331 166 0 chr12 41570502 41570665 -79686865 - MLT1B LTR MaLR 0 390 201 9 902 264 149 0 0 chr12 41573081 41573128 -79684402 + (TA)n Simple_repeat Simple_repeat 1 47 0 9 902 429 180 33 11 chr12 41575702 41575792 -79681738 + B1F SINE Alu 57 148 -1 9 902 266 237 17 0 chr12 41576008 41576067 -79681463 + CT-rich Low_complexity Low_complexity 2 61 0 9 902 1328 157 270 3 chr12 41576212 41576538 -79680992 + MTC LTR MaLR 1 413 -8 9 902 1133 122 16 5 chr12 41577554 41577744 -79679786 + B2_Mm2 SINE B2 4 195 0 9 902 475 252 53 47 chr12 41577799 41577949 -79679581 - MT2A LTR ERVL -372 161 11 1 902 1040 203 30 5 chr12 41578981 41579203 -79678327 - Lx9 LINE L1 -610 7034 6787 1 902 1699 187 204 15 chr12 41579210 41579676 -79677854 + Lx9 LINE L1 7090 7643 -1 1 902 180 129 56 28 chr12 41580675 41580747 -79676783 + (TTAAA)n Simple_repeat Simple_repeat 3 76 0 1 902 234 337 0 24 chr12 41581515 41581600 -79675930 - L2 LINE L2 -2085 1334 1252 1 902 647 25 0 12 chr12 41582442 41582524 -79675006 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 1 902 207 69 0 0 chr12 41582535 41582564 -79674966 + (CAGG)n Simple_repeat Simple_repeat 1 29 0 1 902 1719 211 149 19 chr12 41582845 41583368 -79674162 + RMER20B LTR ERVK 1 591 -36 1 902 326 262 0 24 chr12 41583371 41583453 -79674077 + RMER20B LTR ERVK 526 605 -22 1 902 1861 163 41 58 chr12 41583931 41584347 -79673183 - RLTR9E LTR ERVK 0 409 1 1 902 218 182 36 0 chr12 41584995 41585050 -79672480 + GA-rich Low_complexity Low_complexity 1 57 0 1 902 2600 122 61 51 chr12 41585203 41585260 -79672270 - RLTR19A LTR ERVK 0 496 440 1 902 2789 112 37 57 chr12 41585260 41585752 -79671778 - RLTR45 LTR ERVK 0 482 1 1 902 2600 122 61 51 chr12 41585752 41586185 -79671345 - RLTR19A LTR ERVK -57 439 2 1 902 1277 205 146 137 chr12 41586291 41586640 -79670890 + RMER6D LTR ERVK 1 378 -342 1 902 2570 51 174 0 chr12 41586640 41586990 -79670540 + RLTR10A LTR ERVK 1 411 0 1 902 1277 205 146 137 chr12 41586990 41587354 -79670176 + RMER6D LTR ERVK 379 720 0 1 902 232 337 0 11 chr12 41587849 41587936 -79669594 + MLT1J LTR MaLR 114 199 -313 1 902 2458 199 59 18 chr12 41588599 41589091 -79668439 + RLTR18B LTR ERVK 1 512 0 1 902 1187 177 53 9 chr12 41589138 41589366 -79668164 - MTC LTR MaLR 0 421 184 1 902 234 0 0 0 chr12 41590157 41590183 -79667347 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 902 1623 152 34 3 chr12 41590739 41591035 -79666495 - ORR1B2 LTR MaLR 0 367 63 1 902 2016 159 34 26 chr12 41591040 41591427 -79666103 + MTB_Mm LTR MaLR 18 407 0 1 902 5254 159 101 31 chr12 41591426 41592601 -79664929 + MTB_Mm-int LTR MaLR 2 1258 0 1 902 1195 243 99 89 chr12 41592601 41593016 -79664514 + MTB_Mm LTR MaLR 1 419 0 1 902 224 211 39 0 chr12 41594215 41594267 -79663263 + T-rich Low_complexity Low_complexity 4 57 0 1 902 236 246 29 44 chr12 41595442 41595510 -79662020 + L1MB3 LINE L1 6039 6105 -78 1 902 1624 47 0 0 chr12 41595628 41595821 -79661709 + B2_Mm1a SINE B2 1 193 0 1 902 210 37 0 0 chr12 41595909 41595936 -79661594 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 902 565 240 8 0 chr12 41595936 41596061 -79661469 - B1_Mur1 SINE Alu -23 126 1 1 902 1033 168 82 0 chr12 41596544 41596752 -79660778 + MTC LTR MaLR 39 263 -158 1 902 2330 106 20 41 chr12 41596752 41597146 -79660384 - LTRIS4 LTR ERV1 0 507 122 1 902 796 181 23 40 chr12 41597184 41597357 -79660173 + MTC LTR MaLR 251 420 -1 1 902 236 28 0 53 chr12 41597568 41597606 -79659924 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 1 902 1266 228 150 84 chr12 41597617 41598322 -79659208 + RMER17B LTR ERVK 1 710 -248 1 902 1219 111 17 0 chr12 41598354 41598526 -79659004 + B2_Mm2 SINE B2 3 177 -18 1 902 31 44 0 0 chr12 41598526 41598571 -79658959 + AT_rich Low_complexity Low_complexity 1 45 0 1 902 380 247 11 0 chr12 41598953 41599042 -79658488 + 4.5SRNA scRNA scRNA 1 90 -4 1 902 273 57 0 0 chr12 41599042 41599077 -79658453 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 902 1085 81 0 0 chr12 41599077 41599213 -79658317 - B1_Mus1 SINE Alu -12 136 1 1 902 3374 109 98 15 chr12 41599250 41599771 -79657759 - Lx3B LINE L1 0 6973 6410 1 902 445 222 203 33 chr12 41599779 41599805 -79657725 + B3 SINE B2 4 38 -178 1 902 3105 176 45 38 chr12 41599805 41600406 -79657124 + RLTR1D LTR ERV1 1 605 0 1 902 445 222 203 33 chr12 41600406 41600561 -79656969 + B3 SINE B2 39 215 -1 1 902 677 298 112 0 chr12 41600574 41600779 -79656751 + B4A SINE B4 3 230 -62 1 902 355 196 149 21 chr12 41600781 41600875 -79656655 + PB1D9 SINE Alu 4 109 -11 1 902 324 70 0 0 chr12 41600879 41600922 -79656608 + (TAA)n Simple_repeat Simple_repeat 1 43 0 1 902 356 323 92 0 chr12 41600943 41601073 -79656457 + RSINE1 SINE B4 12 153 -12 1 902 23 0 0 0 chr12 41601094 41601117 -79656413 + AT_rich Low_complexity Low_complexity 1 23 0 1 902 346 115 179 0 chr12 41601365 41601443 -79656087 + ORR1B2 LTR MaLR 2 93 -274 1 902 439 296 76 38 chr12 41601719 41601877 -79655653 - RSINE1 SINE B4 0 165 2 1 902 234 207 110 0 chr12 41601917 41601999 -79655531 - L1MB1 LINE L1 0 6168 6078 1 902 429 261 15 15 chr12 41602639 41602785 -79654745 + L1MB3 LINE L1 5777 5922 -369 1 902 2610 109 5 5 chr12 41602819 41603226 -79654304 - MTB_Mm LTR MaLR 0 407 1 1 902 6312 133 85 25 chr12 41603226 41604411 -79653119 - MTB_Mm-int LTR MaLR 0 1258 2 1 902 2712 65 2 87 chr12 41604414 41604745 -79652785 - MTB_Mm LTR MaLR -8 399 104 1 902 6705 53 4 8 chr12 41604745 41605581 -79651949 + L1Md_F2 LINE L1 5750 6581 -1 1 902 2712 65 2 87 chr12 41605581 41605685 -79651845 - MTB_Mm LTR MaLR -304 103 1 1 902 276 170 0 0 chr12 41605815 41605868 -79651662 + CT-rich Low_complexity Low_complexity 3 55 0 1 902 2193 154 34 34 chr12 41605908 41606325 -79651205 - Lx4B LINE L1 -4 7054 6638 1 902 700 313 96 33 chr12 41606588 41607357 -79650173 - L1M5 LINE L1 -464 5776 4961 1 902 461 281 115 65 chr12 41607471 41607749 -79649781 - B4A SINE B4 0 292 1 1 902 257 259 49 0 chr12 41607814 41607895 -79649635 + MER44D DNA MER2_type 1 85 -620 1 902 737 278 48 89 chr12 41608046 41608225 -79649305 + MER44D DNA MER2_type 347 530 -175 1 902 449 248 79 21 chr12 41608225 41608365 -79649165 - B1F1 SINE Alu 0 149 2 1 902 737 278 48 89 chr12 41608365 41608556 -79648974 + MER44D DNA MER2_type 531 702 -3 1 902 181 281 94 0 chr12 41608854 41608918 -79648612 - L3 LINE CR1 -881 3608 3539 1 902 369 0 0 0 chr12 41609086 41609127 -79648403 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1 902 314 221 159 80 chr12 41609834 41609947 -79647583 - RMER1A Other Other -10 1020 899 1 902 412 137 96 0 chr12 41610023 41610096 -79647434 - RMER1A Other Other -868 162 83 1 902 22 0 0 0 chr12 41610119 41610141 -79647389 + AT_rich Low_complexity Low_complexity 1 22 0 1 902 213 273 0 0 chr12 41610355 41610494 -79647036 + CT-rich Low_complexity Low_complexity 1 139 0 1 902 1244 259 88 19 chr12 41611272 41612297 -79645233 - RMER1A Other Other -500 566 1 1 902 431 261 98 33 chr12 41613057 41613271 -79644259 + MLT1C LTR MaLR 4 231 -236 1 902 238 222 132 53 chr12 41613535 41613649 -79643881 + MIRb SINE MIR 83 209 -59 1 902 509 231 65 85 chr12 41613961 41614160 -79643370 - B3A SINE B2 -1 197 3 1 902 1292 148 175 58 chr12 41614225 41614619 -79642911 + RMER10A LTR ERVL 3 442 0 1 902 447 198 113 0 chr12 41614711 41614817 -79642713 - MER58B DNA MER1_type -1 340 223 1 902 993 84 0 0 chr12 41615029 41615183 -79642347 + (GGCTG)n Simple_repeat Simple_repeat 1 154 0 1 902 360 165 0 0 chr12 41616192 41616283 -79641247 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 902 3705 97 78 2 chr12 41616992 41617519 -79640011 + RMER2 LTR ERV1 1 567 0 1 902 378 0 0 0 chr12 41617548 41617590 -79639940 + (T)n Simple_repeat Simple_repeat 1 42 0 1 902 1881 92 77 7 chr12 41617957 41618231 -79639299 - L1_Mm LINE L1 -157 5726 5434 1 902 464 112 0 117 chr12 41618232 41618343 -79639187 + Lx LINE L1 6556 6653 -1 1 902 5277 68 22 3 chr12 41618518 41619202 -79638328 + L1Md_F2 LINE L1 5886 6582 0 1 902 1982 125 9 14 chr12 41619207 41619556 -79637974 + RMER12 LTR ERVK 459 805 -517 1 902 390 235 138 9 chr12 41619799 41619915 -79637615 + MTE2a LTR MaLR 197 327 -52 1 902 363 105 0 0 chr12 41619947 41620004 -79637526 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 902 351 78 0 0 chr12 41620289 41620340 -79637190 + (C)n Simple_repeat Simple_repeat 1 51 0 1 902 294 206 0 0 chr12 41620993 41621061 -79636469 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 902 444 303 23 44 chr12 41621121 41621430 -79636100 - MLT1B LTR MaLR -24 366 12 1 902 22 0 0 0 chr12 41622014 41622036 -79635494 + AT_rich Low_complexity Low_complexity 1 22 0 1 902 586 242 0 8 chr12 41622071 41622204 -79635326 + B1_Mur1 SINE Alu 5 136 -13 1 902 387 0 0 0 chr12 41622204 41622247 -79635283 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 902 458 339 84 63 chr12 41622250 41622380 -79635150 - MLT1G LTR MaLR -40 551 418 1 902 1204 205 5 0 chr12 41622380 41622590 -79634940 + B3 SINE B2 1 211 -5 1 902 458 339 84 63 chr12 41622590 41622853 -79634677 - MLT1G LTR MaLR -174 417 151 1 902 22 0 0 0 chr12 41622868 41622890 -79634640 + AT_rich Low_complexity Low_complexity 1 22 0 1 902 360 0 0 0 chr12 41622928 41622968 -79634562 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 902 3064 188 53 7 chr12 41622968 41623530 -79634000 - Lx5 LINE L1 -142 6908 6321 1 902 212 338 0 0 chr12 41625478 41625555 -79631975 + MIRb SINE MIR 137 213 -55 1 902 180 0 0 0 chr12 41625654 41625674 -79631856 + (T)n Simple_repeat Simple_repeat 1 20 0 1 902 450 281 14 21 chr12 41625797 41625939 -79631591 + B1F SINE Alu 2 142 -7 1 902 1345 187 57 181 chr12 41626246 41626683 -79630847 + ORR1C2 LTR MaLR 2 384 0 1 902 279 0 0 0 chr12 41626766 41626797 -79630733 + (A)n Simple_repeat Simple_repeat 1 31 0 1 902 1847 134 82 59 chr12 41628376 41628732 -79628798 - ORR1B2 LTR MaLR -3 364 1 1 902 308 155 14 0 chr12 41629021 41629092 -79628438 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 902 186 43 0 0 chr12 41629142 41629165 -79628365 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 902 565 286 30 0 chr12 41629178 41629311 -79628219 - RSINE1 SINE B4 -21 144 8 1 902 647 265 127 5 chr12 41629313 41629518 -79628012 - B4A SINE B4 -59 233 4 1 902 3305 101 21 2 chr12 41629746 41629921 -79627609 - MT2C_Mm LTR ERVL 0 475 300 1 902 459 0 0 0 chr12 41629921 41629972 -79627558 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 902 3305 101 21 2 chr12 41629972 41630262 -79627268 - MT2C_Mm LTR ERVL -176 299 2 1 902 229 221 0 29 chr12 41630389 41630459 -79627071 - MER92C LTR ERV1 0 554 487 1 902 824 256 43 52 chr12 41631167 41631513 -79626017 - RLTR15 LTR ERVK -16 343 1 1 902 239 247 47 58 chr12 41633260 41633346 -79624184 + PB1 SINE Alu 39 123 -4 2 902 477 319 21 11 chr12 41634048 41634235 -79623295 + MER113 DNA MER1_type 46 234 -287 2 902 264 282 134 6 chr12 41634261 41634425 -79623105 + MER113 DNA MER1_type 292 476 -45 2 902 7293 52 15 0 chr12 41634561 41635441 -79622089 - RLTR13B1 LTR ERVK 0 893 1 2 902 239 276 26 0 chr12 41635577 41635653 -79621877 - ID2 SINE ID -5 78 1 2 902 1455 234 63 53 chr12 41635998 41636413 -79621117 - MTD LTR MaLR 0 419 1 2 902 2229 248 97 129 chr12 41636481 41636708 -79620822 + Lx8 LINE L1 6211 6438 -1035 2 902 1166 68 7 0 chr12 41636708 41636854 -79620676 + B1_Mus1 SINE Alu 2 148 0 2 902 2229 248 97 129 chr12 41636854 41636962 -79620568 + Lx8 LINE L1 6439 6459 -1014 2 902 1062 101 0 0 chr12 41636962 41637120 -79620410 + (GGAA)n Simple_repeat Simple_repeat 3 160 0 2 902 2229 248 97 129 chr12 41637120 41637746 -79619784 + Lx8 LINE L1 6460 7142 -331 2 902 2912 135 76 27 chr12 41637776 41638302 -79619228 + Lx LINE L1 6102 6653 -1 2 902 372 43 0 0 chr12 41638309 41638355 -79619175 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 902 1455 34 0 0 chr12 41638385 41638562 -79618968 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 2 902 412 312 30 24 chr12 41638598 41638762 -79618768 + RSINE1 SINE B4 1 165 0 2 902 449 284 180 17 chr12 41639339 41639694 -79617836 - L1MC4 LINE L1 -140 7902 7490 2 902 760 341 105 34 chr12 41640468 41640878 -79616652 - MER34A1 LTR ERV1 -131 456 18 2 902 275 98 0 38 chr12 41641230 41641283 -79616247 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 2 902 899 159 6 0 chr12 41641279 41641449 -79616081 + CT-rich Low_complexity Low_complexity 3 173 0 2 902 449 304 108 5 chr12 41641687 41641872 -79615658 - MER3 DNA MER1_type -4 205 2 2 902 3211 56 2 10 chr12 41642134 41642533 -79614997 - MTA_Mm LTR MaLR 0 396 1 2 902 289 284 13 13 chr12 41642697 41642772 -79614758 + ID4_ SINE ID 2 76 -7 2 902 351 0 0 0 chr12 41642791 41642830 -79614700 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 902 939 204 250 18 chr12 41642830 41643170 -79614360 + MTD LTR MaLR 1 419 0 2 902 265 323 0 0 chr12 41643207 41643272 -79614258 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 2 902 185 65 32 0 chr12 41643272 41643303 -79614227 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 902 1000 221 48 10 chr12 41644970 41645176 -79612354 + B3 SINE B2 2 215 -1 2 902 460 284 0 0 chr12 41647138 41647240 -79610290 + PB1D7 SINE Alu 13 114 -6 2 902 895 255 5 0 chr12 41647250 41647442 -79610088 + ID_B1 SINE B4 3 195 -29 2 902 307 333 18 71 chr12 41649034 41649202 -79608328 - RLTR14 LTR ERV1 0 382 224 2 902 347 259 60 0 chr12 41649688 41649804 -79607726 - MLT1D LTR MaLR 0 505 383 2 902 615 201 8 44 chr12 41649953 41650106 -79607424 - B1F SINE Alu -1 148 6 2 902 380 244 219 0 chr12 41650169 41650288 -79607242 + B4 SINE B4 3 147 -145 2 902 1613 122 104 19 chr12 41650292 41650503 -79607027 + RLTR24 LTR ERV1 5 239 -290 2 902 2032 141 15 15 chr12 41650503 41650828 -79606702 - ORR1A3 LTR MaLR -1 325 1 2 902 1613 122 104 19 chr12 41650828 41650924 -79606606 + RLTR24 LTR ERV1 240 337 -192 2 902 283 39 38 38 chr12 41650926 41650979 -79606551 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2 902 1262 96 11 6 chr12 41650984 41651162 -79606368 + B2_Mm1t SINE B2 1 179 -14 2 902 337 119 158 61 chr12 41651194 41651313 -79606217 + B2_Mm2 SINE B2 47 192 -1 2 902 835 183 45 6 chr12 41651313 41651489 -79606041 + RLTR24 LTR ERV1 342 524 -5 2 902 363 227 27 0 chr12 41651489 41651564 -79605966 + B4 SINE B4 139 215 -77 2 902 222 37 0 0 chr12 41651564 41651591 -79605939 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 902 573 354 62 52 chr12 41652105 41652590 -79604940 + LTR33 LTR ERVL 24 513 -2 2 902 253 310 95 20 chr12 41652613 41652761 -79604769 + MIRb SINE MIR 86 244 -18 2 902 528 84 0 0 chr12 41653654 41653737 -79603793 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 902 387 0 0 0 chr12 41653737 41653779 -79603751 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 902 442 270 43 54 chr12 41653965 41654149 -79603381 + MLT2B3 LTR ERVL 3 184 -370 2 902 337 294 169 14 chr12 41654160 41654367 -79603163 + MLT2B3 LTR ERVL 316 554 0 2 902 432 369 34 5 chr12 41654367 41654565 -79602965 + LTR85b LTR Gypsy? 581 784 0 2 902 1179 62 7 0 chr12 41655144 41655290 -79602240 + B1_Mus1 SINE Alu 2 148 0 2 902 284 299 12 6 chr12 41655320 41655449 -79602081 - MLT2D LTR ERVL -17 546 413 2 902 574 234 63 16 chr12 41655449 41655640 -79601890 - MLT2D LTR ERVL -213 201 2 2 902 5293 84 34 22 chr12 41655640 41656396 -79601134 + Lx2 LINE L1 6233 6997 0 2 902 668 238 52 38 chr12 41656775 41656985 -79600545 - B3 SINE B2 0 216 4 2 902 236 310 17 0 chr12 41657193 41657309 -79600221 + (TA)n Simple_repeat Simple_repeat 1 118 0 2 902 390 21 0 0 chr12 41657311 41657358 -79600172 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 902 504 306 42 0 chr12 41657375 41657568 -79599962 + MLT2D LTR ERVL 1 201 -213 2 902 763 217 77 12 chr12 41657897 41658065 -79599465 - B3 SINE B2 -36 180 2 2 902 606 257 73 78 chr12 41658191 41658410 -79599120 + ID_B1 SINE B4 6 223 -1 2 902 242 301 0 97 chr12 41658500 41658614 -79598916 - L2a LINE L2 -50 3376 3274 2 902 450 0 0 0 chr12 41658971 41659021 -79598509 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 902 279 226 0 54 chr12 41659050 41659106 -79598424 - ID4 SINE ID 0 83 31 2 902 290 214 120 46 chr12 41659140 41659248 -79598282 + MT2B LTR ERVL 148 263 -338 2 902 542 112 153 0 chr12 41659175 41659273 -79598257 + B1_Mur1 SINE Alu 37 149 0 2 902 1556 55 124 0 chr12 41659345 41659562 -79597968 + L1_Mus1 LINE L1 6324 6567 0 2 902 432 0 0 0 chr12 41659562 41659610 -79597920 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 902 897 81 0 0 chr12 41659610 41659733 -79597797 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 2 902 198 383 33 42 chr12 41661031 41661151 -79596379 - L3 LINE CR1 -1053 3436 3318 2 902 180 0 0 0 chr12 41661874 41661894 -79595636 + (TAGGG)n Simple_repeat Simple_repeat 5 24 0 2 902 422 193 12 0 chr12 41661894 41661977 -79595553 + ORR1B2 LTR MaLR 1 84 -290 2 902 852 115 22 0 chr12 41661972 41662111 -79595419 + URR1B DNA MER1_type 84 225 0 2 902 1149 163 139 38 chr12 41662121 41662408 -79595122 + ORR1B2 LTR MaLR 52 367 0 2 902 490 247 121 24 chr12 41662415 41662581 -79594949 - B3A SINE B2 -16 182 1 2 902 344 22 0 22 chr12 41662603 41662649 -79594881 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 902 343 333 58 36 chr12 41662666 41662803 -79594727 - RSINE1 SINE B4 -23 142 3 2 902 331 317 80 66 chr12 41663088 41663301 -79594229 - MER58A DNA MER1_type 0 224 9 2 902 297 261 54 61 chr12 41664220 41664367 -79593163 + MamRep434 DNA TcMar 5 150 -276 2 902 381 270 183 35 chr12 41664599 41664741 -79592789 + RSINE1 SINE B4 3 165 0 2 902 24 0 0 0 chr12 41665039 41665063 -79592467 + AT_rich Low_complexity Low_complexity 1 24 0 2 902 286 175 25 0 chr12 41665150 41665230 -79592300 + CT-rich Low_complexity Low_complexity 1 82 0 2 902 216 316 0 50 chr12 41665246 41665326 -79592204 + ID4_ SINE ID 5 80 -3 2 902 321 225 0 14 chr12 41665591 41665663 -79591867 - ID4_ SINE ID -11 72 2 2 902 675 240 32 22 chr12 41665687 41665891 -79591639 - L1MA6 LINE L1 -8 6283 6081 2 902 9569 82 73 4 chr12 41666366 41667452 -79590078 - L1_Mus3 LINE L1 -9 6629 5461 2 902 3563 60 0 0 chr12 41667452 41667900 -79589630 - L1Md_T LINE L1 0 6582 6135 2 902 9569 105 19 9 chr12 41667900 41668981 -79588549 - L1_Mus3 LINE L1 -423 5460 4373 2 902 2774 96 14 0 chr12 41668978 41669407 -79588123 + L1_Mus3 LINE L1 3944 4378 -1505 2 902 184 275 42 42 chr12 41669457 41669529 -79588001 + MIRm SINE MIR 158 229 -47 2 902 901 131 20 14 chr12 41669727 41669874 -79587656 - B1_Mur4 SINE Alu -2 148 1 2 902 192 267 22 0 chr12 41670620 41670665 -79586865 - MER5A DNA MER1_type -1 188 143 2 902 620 263 293 32 chr12 41670901 41671270 -79586260 + RMER20B LTR ERVK 124 588 -39 2 902 367 303 109 34 chr12 41671805 41671952 -79585578 - MTEa LTR MaLR -219 160 3 2 902 275 268 299 0 chr12 41672662 41672759 -79584771 - RSINE1 SINE B4 -31 134 9 2 902 499 226 31 0 chr12 41674287 41674400 -79583130 + B1_Mur1 SINE Alu 10 126 -21 2 902 264 341 22 11 chr12 41674407 41674432 -79583098 - BC1_Mm scRNA scRNA -56 96 72 2 902 398 36 18 0 chr12 41674432 41674488 -79583042 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 902 282 303 31 1 chr12 41674488 41674554 -79582976 - ID4 SINE ID -81 71 4 2 902 1261 174 14 19 chr12 41674579 41674790 -79582740 + B3 SINE B2 1 210 -6 2 902 896 246 24 9 chr12 41674818 41675031 -79582499 + B3 SINE B2 1 216 0 2 902 841 164 0 0 chr12 41675039 41675167 -79582363 + B1_Mur4 SINE Alu 2 129 -21 2 902 186 71 0 0 chr12 41675182 41675210 -79582320 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 902 204 159 23 0 chr12 41675803 41675847 -79581683 + A-rich Low_complexity Low_complexity 1 45 0 2 902 401 0 20 0 chr12 41676642 41676691 -79580839 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 902 616 291 54 72 chr12 41676700 41676978 -79580552 - B4A SINE B4 -18 274 2 2 902 398 132 13 0 chr12 41677355 41677431 -79580099 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 902 682 276 142 29 chr12 41677518 41677764 -79579766 - B4 SINE B4 -2 290 17 2 902 21 36 0 0 chr12 41678091 41678119 -79579411 + AT_rich Low_complexity Low_complexity 1 28 0 2 902 1419 63 5 0 chr12 41678609 41678798 -79578732 + MT2C_Mm LTR ERVL 286 475 0 2 902 414 150 0 12 chr12 41678798 41678879 -79578651 + MERVL-int LTR ERVL 1 80 -5405 2 902 10382 94 30 16 chr12 41678865 41680444 -79577086 + MERVL-int LTR ERVL 196 1795 -3690 2 902 1168 64 32 0 chr12 41680439 41680596 -79576934 + MERVL-int LTR ERVL 2018 2179 -3306 2 903 693 186 24 0 chr12 41681041 41681165 -79576365 - B1_Mur3 SINE Alu -12 137 11 2 903 366 233 43 93 chr12 41681056 41681217 -79576313 - MT2B LTR ERVL -323 278 126 2 903 681 299 72 77 chr12 41681220 41681389 -79576141 + RMER1C Other Other 499 670 -672 2 903 3146 68 2 5 chr12 41681389 41681790 -79575740 + MTB LTR MaLR 1 400 0 2 903 681 299 72 77 chr12 41681790 41681909 -79575621 + RMER1C Other Other 671 802 -540 2 903 234 0 0 0 chr12 41681909 41681935 -79575595 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 3 903 681 299 72 77 chr12 41681935 41682033 -79575497 + RMER1C Other Other 803 883 -459 2 903 1130 104 34 26 chr12 41682033 41682265 -79575265 + MTB LTR MaLR 113 347 -53 3 903 1622 176 32 17 chr12 41682265 41682611 -79574919 + RMER1C Other Other 992 1342 0 3 903 370 256 0 13 chr12 41682913 41682992 -79574538 - ID4 SINE ID 0 83 6 3 903 446 317 74 42 chr12 41683178 41683395 -79574135 + MLT1A0 LTR MaLR 1 224 -141 3 903 2410 76 6 0 chr12 41684411 41684728 -79572802 - ORR1A2 LTR MaLR -8 319 1 3 903 305 24 24 0 chr12 41684849 41684891 -79572639 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 903 997 74 7 36 chr12 41684891 41685031 -79572499 - B1_Mm SINE Alu -11 136 1 3 903 752 236 104 64 chr12 41685808 41686134 -79571396 + RLTR15 LTR ERVK 1 339 -20 3 903 265 325 20 95 chr12 41686163 41686459 -79571071 - LTR37A LTR ERV1 -20 406 133 3 903 867 126 0 25 chr12 41686660 41686898 -79570632 + (TG)n Simple_repeat Simple_repeat 1 231 0 3 903 897 54 67 30 chr12 41686939 41687073 -79570457 + L1_Mus1 LINE L1 6428 6566 -1 3 903 1731 246 145 11 chr12 41687124 41687698 -79569832 + MER67C LTR ERV1 61 711 0 3 903 279 366 34 23 chr12 41687702 41687878 -79569652 + MIR SINE MIR 85 262 0 3 903 2852 32 3 3 chr12 41687908 41688250 -79569280 - L1Md_F2 LINE L1 -8 6574 6233 3 903 1841 220 157 11 chr12 41688423 41688888 -79568642 + RMER15 LTR ERVL 41 573 -2 3 903 788 268 14 19 chr12 41688934 41689147 -79568383 + B3 SINE B2 1 212 -4 3 903 22 0 0 0 chr12 41689624 41689646 -79567884 + AT_rich Low_complexity Low_complexity 1 22 0 3 903 493 233 108 48 chr12 41690675 41690842 -79566688 + MLT1A0 LTR MaLR 17 193 -172 3 903 451 270 25 56 chr12 41690813 41690974 -79566556 + B3A SINE B2 29 184 -14 3 903 1937 148 69 53 chr12 41691624 41691946 -79565584 + ORR1C2 LTR MaLR 1 332 -52 3 903 810 47 23 16 chr12 41691946 41692075 -79565455 + L1Md_F2 LINE L1 6451 6580 -2 3 903 1937 148 69 53 chr12 41692075 41692130 -79565400 + ORR1C2 LTR MaLR 333 384 0 3 903 222 336 115 39 chr12 41692238 41692368 -79565162 + B4A SINE B4 82 221 -71 3 903 544 269 8 25 chr12 41692252 41692370 -79565160 + PB1 SINE Alu 9 124 -3 3 903 467 286 23 0 chr12 41692372 41692547 -79564983 - L1M2 LINE L1 -1647 4496 4318 3 903 343 38 19 19 chr12 41692622 41692676 -79564854 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 903 258 32 0 0 chr12 41692676 41692707 -79564823 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 903 831 254 64 30 chr12 41692756 41692959 -79564571 - B3 SINE B2 0 216 7 3 903 6015 134 51 8 chr12 41693540 41694600 -79562930 - Lx LINE L1 -178 5705 4601 3 903 5507 117 42 18 chr12 41694587 41695511 -79562019 + Lx LINE L1 5709 6654 0 3 903 480 35 0 0 chr12 41695829 41695887 -79561643 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 903 189 74 0 0 chr12 41695887 41695914 -79561616 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 903 696 285 51 0 chr12 41695916 41696074 -79561456 - B3A SINE B2 -32 166 1 3 903 537 298 90 51 chr12 41696341 41696674 -79560856 - MER31-int LTR ERV1 -756 4180 3835 3 903 479 239 66 46 chr12 41696731 41696928 -79560602 + L1MB7 LINE L1 4923 5123 -1023 3 903 682 201 13 73 chr12 41696994 41697144 -79560386 + B3A SINE B2 1 141 -57 3 903 333 0 0 0 chr12 41697155 41697192 -79560338 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 903 1902 106 35 26 chr12 41697207 41697518 -79560012 + ORR1A4 LTR MaLR 1 314 -15 3 903 3533 165 68 31 chr12 41697516 41698248 -79559282 + ORR1A4-int LTR MaLR 63 821 -1142 3 903 1079 129 193 100 chr12 41698039 41698298 -79559232 + MT2B LTR ERVL 5 287 -314 3 903 1013 187 34 0 chr12 41698257 41698492 -79559038 + ORR1A4-int LTR MaLR 718 960 -1003 3 903 1169 75 0 0 chr12 41698518 41698664 -79558866 + B1_Mus2 SINE Alu 1 146 -1 3 903 458 133 0 11 chr12 41698669 41698760 -79558770 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 3 903 411 324 64 7 chr12 41698825 41698965 -79558565 + ID_B1 SINE B4 77 224 0 3 903 739 115 15 0 chr12 41698972 41699102 -79558428 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 3 903 430 118 0 0 chr12 41700538 41700606 -79556924 - Lx4A LINE L1 -1182 5876 5809 3 903 303 206 0 42 chr12 41700600 41700671 -79556859 - MurSatRep1 Unknown Unknown -1127 1010 943 3 903 844 131 0 0 chr12 41700667 41700797 -79556733 - MurSatRep1 Unknown Unknown -1397 740 611 3 903 363 214 36 10 chr12 41701119 41701264 -79556266 + L1MB7 LINE L1 5209 5356 -822 3 903 234 289 130 22 chr12 41701534 41701626 -79555904 + ORR1C2 LTR MaLR 219 320 -64 3 903 806 221 42 124 chr12 41701817 41702034 -79555496 - B3 SINE B2 -8 208 10 3 903 888 280 60 35 chr12 41702191 41702621 -79554909 + L1MB7 LINE L1 5511 5951 -233 3 903 420 257 217 6 chr12 41702740 41702906 -79554624 + B3 SINE B2 8 208 -8 3 903 231 182 0 98 chr12 41702945 41703006 -79554524 + L1MB8 LINE L1 6112 6166 -12 3 903 632 238 204 0 chr12 41703719 41703891 -79553639 + B3 SINE B2 1 207 -9 3 903 615 207 202 22 chr12 41704028 41704211 -79553319 + B3 SINE B2 1 216 0 3 903 180 0 0 0 chr12 41704219 41704239 -79553291 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 3 903 373 278 83 0 chr12 41704441 41704549 -79552981 - PB1D9 SINE Alu -3 117 1 3 903 727 44 0 0 chr12 41704572 41704663 -79552867 - B1_Mm SINE Alu 0 147 57 3 903 437 313 98 20 chr12 41704764 41705018 -79552512 + Lx8 LINE L1 7104 7377 -96 3 903 1679 230 72 20 chr12 41705181 41705682 -79551848 + RLTR11A2 LTR ERVK 1 527 0 3 903 225 156 0 22 chr12 41706077 41706123 -79551407 + L1M2 LINE L1 5798 5842 -455 3 903 219 368 22 22 chr12 41706388 41706524 -79551006 - L2 LINE L2 -557 2862 2727 3 903 283 373 56 0 chr12 41706657 41706799 -79550731 + MER58A DNA MER1_type 4 153 -71 3 903 698 282 46 88 chr12 41708791 41708985 -79548545 - B3A SINE B2 -8 187 2 3 903 704 209 23 0 chr12 41709620 41709749 -79547781 - B1_Mur4 SINE Alu -2 148 17 3 903 655 242 164 22 chr12 41709748 41709980 -79547550 + MLT1A0 LTR MaLR 101 365 0 3 903 362 290 36 58 chr12 41709985 41710124 -79547406 - MIR SINE MIR -109 153 18 3 903 1511 99 4 4 chr12 41710147 41710379 -79547151 - L1_Mus3 LINE L1 -15 6623 6392 3 903 300 309 47 39 chr12 41711595 41711723 -79545807 + RSINE1 SINE B4 3 131 -34 3 903 408 297 144 28 chr12 41711701 41712020 -79545510 + MER67A LTR ERV1 43 398 -145 3 903 220 306 0 0 chr12 41712015 41712064 -79545466 - ID4_ SINE ID -33 50 2 3 903 276 263 39 13 chr12 41712860 41712937 -79544593 + ID4_ SINE ID 2 80 -3 3 903 887 298 11 70 chr12 41713202 41713487 -79544043 - B4A SINE B4 -22 270 3 3 903 1165 64 0 0 chr12 41713871 41714011 -79543519 + B1_Mus1 SINE Alu 1 140 -8 3 903 25 31 0 0 chr12 41714028 41714060 -79543470 + AT_rich Low_complexity Low_complexity 1 32 0 3 903 356 311 166 25 chr12 41715350 41715591 -79541939 + L2 LINE L2 2691 2965 -454 3 903 189 0 0 0 chr12 41716396 41716417 -79541113 + (GAAAA)n Simple_repeat Simple_repeat 3 23 0 3 903 651 67 0 0 chr12 41716417 41716505 -79541025 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 903 1021 259 0 0 chr12 41716789 41716994 -79540536 + B3 SINE B2 3 207 -9 3 903 405 0 0 0 chr12 41716994 41717039 -79540491 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 903 1500 174 92 33 chr12 41717196 41717557 -79539973 + MT2B LTR ERVL 1 541 -60 3 903 423 0 0 0 chr12 41717557 41717604 -79539926 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 903 1500 158 77 29 chr12 41717604 41717645 -79539885 + MT2B LTR ERVL 542 600 -1 3 903 689 23 0 11 chr12 41717670 41717677 -79539853 + (GAA)n Simple_repeat Simple_repeat 2 8 0 3 903 1215 102 0 0 chr12 41717677 41717854 -79539676 + (GGGAGA)n Simple_repeat Simple_repeat 4 180 0 3 903 689 23 0 11 chr12 41717854 41717934 -79539596 + (GAA)n Simple_repeat Simple_repeat 3 82 0 3 903 438 222 20 20 chr12 41717995 41718096 -79539434 + B1_Mm SINE Alu 1 101 -46 3 903 23 33 0 0 chr12 41718265 41718295 -79539235 + AT_rich Low_complexity Low_complexity 1 30 0 3 903 374 257 40 0 chr12 41718469 41718570 -79538960 - MER103 DNA DNA 0 166 62 3 903 713 218 7 0 chr12 41718921 41719068 -79538462 - B1_Mur4 SINE Alu 0 150 3 3 903 3844 66 8 2 chr12 41719078 41719594 -79537936 - L1Md_F2 LINE L1 -82 6500 5982 3 903 1068 106 0 0 chr12 41719852 41719994 -79537536 + B1_Mus1 SINE Alu 1 142 -6 3 903 693 21 21 10 chr12 41720013 41720109 -79537421 + (GAGAA)n Simple_repeat Simple_repeat 4 100 0 3 903 393 265 133 77 chr12 41720304 41720500 -79537030 + RMER2 LTR ERV1 334 540 -27 3 903 1261 254 37 55 chr12 41720551 41720930 -79536600 + RMER2 LTR ERV1 196 567 0 3 903 285 194 30 61 chr12 41720944 41721043 -79536487 - L1M4 LINE L1 -368 5806 5711 3 903 2306 192 46 46 chr12 41721077 41721601 -79535929 + RLTR24 LTR ERV1 6 529 0 3 903 400 210 51 26 chr12 41722321 41722441 -79535089 + RLTR12B LTR ERVK 11 150 -378 3 903 2632 204 82 7 chr12 41722452 41722999 -79534531 - RMER20B LTR ERVK -39 588 1 3 903 245 252 102 63 chr12 41722999 41723126 -79534404 + RLTR12B LTR ERVK 153 284 -244 3 903 319 269 0 31 chr12 41723949 41724045 -79533485 - MER34 LTR ERV1 -116 426 334 3 903 302 138 0 17 chr12 41724498 41724557 -79532973 + GA-rich Low_complexity Low_complexity 3 60 0 3 903 616 313 85 5 chr12 41724755 41724967 -79532563 + Lx8 LINE L1 7088 7316 -157 3 903 212 54 0 51 chr12 41725469 41725508 -79532022 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 3 903 807 206 0 0 chr12 41725855 41725996 -79531534 - B1_Mur2 SINE Alu -6 143 3 3 903 1593 187 62 76 chr12 41726241 41726387 -79531143 - ORR1B2 LTR MaLR -2 365 223 3 903 2926 101 35 41 chr12 41726387 41726872 -79530658 - RLTR45 LTR ERVK 0 482 1 3 903 1593 187 62 76 chr12 41726872 41726910 -79530620 - ORR1B2 LTR MaLR -145 222 190 3 903 1272 117 5 5 chr12 41726910 41727099 -79530431 - B2_Mm2 SINE B2 -4 191 3 4 903 1593 187 62 76 chr12 41727099 41727283 -79530247 - ORR1B2 LTR MaLR -178 189 1 3 903 639 297 62 35 chr12 41727650 41727908 -79529622 - RLTR16 LTR ERVK -240 265 1 4 903 23 33 0 0 chr12 41727922 41727952 -79529578 + AT_rich Low_complexity Low_complexity 1 30 0 4 903 21 36 0 0 chr12 41727971 41727999 -79529531 + AT_rich Low_complexity Low_complexity 1 28 0 4 903 830 203 27 143 chr12 41728130 41728311 -79529219 + B3A SINE B2 1 162 -36 4 903 381 86 0 0 chr12 41728311 41728369 -79529161 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 903 369 43 0 0 chr12 41728369 41728415 -79529115 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 903 830 203 27 143 chr12 41728415 41728456 -79529074 + B3A SINE B2 163 197 -1 4 903 227 338 14 0 chr12 41728466 41728537 -79528993 + ID4 SINE ID 3 74 -9 4 903 204 231 0 0 chr12 41729081 41729120 -79528410 - MIR3 SINE MIR -2 206 168 4 903 421 242 22 82 chr12 41729124 41729259 -79528271 - MLT1H LTR MaLR -2 547 421 4 903 257 355 64 21 chr12 41729312 41729453 -79528077 - MIRb SINE MIR -17 251 105 4 903 506 165 0 0 chr12 41729509 41729588 -79527942 + B1_Mus2 SINE Alu 59 137 -10 4 903 492 128 0 0 chr12 41729914 41729992 -79527538 + (GAGAA)n Simple_repeat Simple_repeat 3 80 0 4 903 207 0 0 0 chr12 41730072 41730095 -79527435 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 903 768 93 9 9 chr12 41730325 41730434 -79527096 - RLTR23 LTR ERV1 -6 424 316 4 903 859 132 27 8 chr12 41730754 41730907 -79526623 - B2_Mm2 SINE B2 -57 159 1 4 903 365 269 42 56 chr12 41730910 41731052 -79526478 + LTR83 LTR ERVL 255 394 -386 4 903 320 290 0 65 chr12 41731520 41731627 -79525903 - PB1D10 SINE Alu -17 100 1 4 903 588 326 128 26 chr12 41731861 41732315 -79525215 - LTR75 LTR ERVL -28 534 35 4 903 276 337 48 12 chr12 41732454 41732538 -79524992 - B1F2 SINE Alu -61 88 2 4 903 526 279 57 7 chr12 41732538 41732606 -79524924 - ID SINE ID -142 82 8 4 903 384 151 68 0 chr12 41732835 41732908 -79524622 + Lx9 LINE L1 7330 7407 -237 4 903 576 0 0 0 chr12 41732949 41733013 -79524517 + (CCA)n Simple_repeat Simple_repeat 1 64 0 4 903 533 151 17 0 chr12 41733013 41733132 -79524398 + Lx9 LINE L1 7524 7644 0 4 903 18350 156 86 15 chr12 41733640 41739464 -79518066 - L1Md_F2 LINE L1 -2 6580 236 4 903 904 142 7 7 chr12 41740203 41740352 -79517178 + B1_Mur4 SINE Alu 1 149 -1 4 903 222 91 0 0 chr12 41740415 41740448 -79517082 + (T)n Simple_repeat Simple_repeat 1 33 0 4 903 701 168 86 21 chr12 41740448 41740588 -79516942 - B1_Mur4 SINE Alu 0 150 2 4 903 411 296 138 19 chr12 41740603 41740813 -79516717 - L1MD3 LINE L1 -1026 6969 6735 4 903 225 0 0 0 chr12 41741393 41741418 -79516112 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 903 306 0 0 0 chr12 41741418 41741451 -79516079 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 903 589 329 81 98 chr12 41741463 41741602 -79515928 + Lx8 LINE L1 6429 6556 -917 4 903 506 243 184 0 chr12 41741602 41741754 -79515776 + B3A SINE B2 4 183 -15 4 903 589 329 81 98 chr12 41741754 41742277 -79515253 + Lx8 LINE L1 6557 7080 -393 4 903 378 0 0 0 chr12 41742277 41742319 -79515211 + (CATAT)n Simple_repeat Simple_repeat 2 43 0 4 903 589 329 81 98 chr12 41742319 41742337 -79515193 + Lx8 LINE L1 7081 7098 -375 4 903 1265 82 60 0 chr12 41742604 41742786 -79514744 + B2_Mm2 SINE B2 1 193 -2 4 903 26 0 0 0 chr12 41742836 41742862 -79514668 + AT_rich Low_complexity Low_complexity 1 26 0 4 903 483 48 0 0 chr12 41743307 41743369 -79514161 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 903 1085 139 61 0 chr12 41744848 41745028 -79512502 + B2_Mm2 SINE B2 2 192 -3 4 903 3109 178 105 10 chr12 41745035 41745637 -79511893 + RLTR33 LTR ERVK 20 678 0 4 903 577 281 274 24 chr12 41745661 41745951 -79511579 + MTEb LTR MaLR 16 378 -1 4 903 697 235 146 15 chr12 41746027 41746226 -79511304 + URR1B DNA MER1_type 1 225 0 4 903 606 192 58 0 chr12 41746930 41747050 -79510480 - B1_Mur3 SINE Alu -13 136 10 4 903 252 282 34 34 chr12 41746981 41747069 -79510461 - MT2B LTR ERVL -361 240 153 4 903 2170 194 158 54 chr12 41747269 41748051 -79509479 + RMER6C LTR ERVK 1 720 0 4 903 1264 71 18 0 chr12 41748419 41748588 -79508942 - B2_Mm2 SINE B2 -5 190 19 4 903 3716 145 35 20 chr12 41748821 41749483 -79508047 + RMER6A LTR ERVK 1 672 -84 4 903 607 197 57 21 chr12 41749796 41749936 -79507594 - B1_Mur4 SINE Alu -5 145 1 4 903 225 0 0 0 chr12 41750229 41750254 -79507276 + (A)n Simple_repeat Simple_repeat 1 25 0 4 903 217 202 0 87 chr12 41750612 41750704 -79506826 + (CGGGG)n Simple_repeat Simple_repeat 1 84 0 4 903 306 294 72 65 chr12 41752108 41752130 -79505400 + ID_B1 SINE B4 70 223 -1 4 903 593 183 99 0 chr12 41752130 41752261 -79505269 + B1_Mur1 SINE Alu 6 149 0 4 903 210 222 153 0 chr12 41753062 41753134 -79504396 - ID4 SINE ID 0 83 1 4 903 290 342 16 32 chr12 41753150 41753165 -79504365 - ID_B1 SINE B4 -20 204 84 4 903 368 269 17 0 chr12 41753165 41753273 -79504257 - PB1D10 SINE Alu -32 117 3 4 903 728 149 231 29 chr12 41753485 41753658 -79503872 - B3 SINE B2 -5 211 4 4 903 253 259 11 120 chr12 41754441 41754452 -79503078 + RLTR25A LTR ERVK 486 566 -536 4 903 300 250 125 0 chr12 41754452 41754532 -79502998 + B1_Mus2 SINE Alu 1 90 -57 4 903 254 279 88 55 chr12 41754453 41754544 -79502986 + 4.5SRNA scRNA scRNA 1 94 0 4 903 386 187 83 52 chr12 41754630 41754726 -79502804 - B1_Mus2 SINE Alu -1 146 48 4 903 2131 222 34 136 chr12 41754877 41755405 -79502125 - RCHARR1 DNA MER1_type -1 973 498 4 903 561 30 0 0 chr12 41755405 41755472 -79502058 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 903 1194 48 0 7 chr12 41755472 41755620 -79501910 - B1_Mm SINE Alu 0 147 1 4 903 2131 222 34 136 chr12 41755620 41755653 -79501877 - RCHARR1 DNA MER1_type -477 497 466 4 903 623 159 180 16 chr12 41755653 41755781 -79501749 + B1_Mur3 SINE Alu 1 149 0 4 903 2131 222 34 136 chr12 41755781 41755886 -79501644 - RCHARR1 DNA MER1_type -509 465 375 4 903 745 173 68 0 chr12 41755886 41756019 -79501511 + B1_Mur4 SINE Alu 2 143 -7 4 903 2131 222 34 136 chr12 41756019 41756090 -79501440 - RCHARR1 DNA MER1_type -600 374 310 4 903 23 0 0 0 chr12 41756170 41756193 -79501337 + AT_rich Low_complexity Low_complexity 1 23 0 4 903 288 273 72 72 chr12 41757095 41757304 -79500226 - L1MA7 LINE L1 -267 6024 5816 4 903 285 29 0 0 chr12 41757304 41757338 -79500192 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 903 949 121 0 12 chr12 41757341 41757508 -79500022 + (TTCC)n Simple_repeat Simple_repeat 4 168 0 4 903 431 239 57 0 chr12 41757511 41757599 -79499931 - PB1D10 SINE Alu -13 104 12 4 903 258 32 0 0 chr12 41757997 41758028 -79499502 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 903 417 198 9 18 chr12 41758184 41758297 -79499233 + CT-rich Low_complexity Low_complexity 3 114 0 4 903 248 152 55 37 chr12 41758321 41758430 -79499100 + CT-rich Low_complexity Low_complexity 2 112 0 4 903 2475 144 24 35 chr12 41758680 41759105 -79498425 - MTC LTR MaLR -1 420 1 4 903 1522 262 34 38 chr12 41759359 41759807 -79497723 - Lx8 LINE L1 -598 6875 6430 4 903 453 272 105 10 chr12 41759814 41760002 -79497528 - MLT1F LTR MaLR 0 624 290 4 903 336 305 186 21 chr12 41760016 41760210 -79497320 - MLT1F LTR MaLR -316 232 7 4 903 234 254 0 29 chr12 41760420 41760489 -79497041 + CT-rich Low_complexity Low_complexity 1 67 0 4 903 202 299 0 0 chr12 41760732 41760799 -79496731 + T-rich Low_complexity Low_complexity 1 67 0 4 903 229 239 22 0 chr12 41760821 41760867 -79496663 - ID_B1 SINE B4 -7 217 171 4 903 268 266 75 12 chr12 41760896 41760976 -79496554 - ID SINE ID -139 85 1 4 903 189 0 0 0 chr12 41761542 41761563 -79495967 + (TTA)n Simple_repeat Simple_repeat 2 22 0 4 903 1611 22 5 0 chr12 41761563 41761747 -79495783 - B2_Mm1t SINE B2 -8 185 1 4 903 558 0 0 0 chr12 41761753 41761815 -79495715 + (TTTTA)n Simple_repeat Simple_repeat 2 63 0 4 903 879 255 21 31 chr12 41762342 41762536 -79494994 - B3 SINE B2 -10 206 15 4 903 312 296 69 16 chr12 41762608 41762797 -79494733 - L1MC1 LINE L1 -83 6250 6052 4 903 511 304 16 0 chr12 41763334 41763459 -79494071 - RSINE1 SINE B4 -36 129 3 4 903 36 53 0 0 chr12 41763564 41763621 -79493909 + AT_rich Low_complexity Low_complexity 1 57 0 4 903 218 32 32 0 chr12 41763653 41763684 -79493846 + (CAT)n Simple_repeat Simple_repeat 2 33 0 4 903 778 212 162 0 chr12 41763885 41764064 -79493466 + B3 SINE B2 3 210 -6 4 903 394 240 117 12 chr12 41765305 41765431 -79492099 - B1_Mur2 SINE Alu -2 147 13 4 903 1033 229 9 24 chr12 41765463 41765673 -79491857 + B3 SINE B2 4 210 -6 4 903 207 0 0 0 chr12 41766704 41766727 -79490803 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 4 903 924 277 9 19 chr12 41767039 41767249 -79490281 - B3 SINE B2 -2 214 7 4 903 836 190 21 0 chr12 41767513 41767655 -79489875 - B1_Mus2 SINE Alu 0 147 3 4 903 257 238 148 12 chr12 41767787 41767868 -79489662 - MTEa LTR MaLR 0 379 288 4 903 602 207 0 195 chr12 41767980 41768154 -79489376 + B1_Mur2 SINE Alu 1 140 -9 4 903 257 372 50 21 chr12 41768187 41768327 -79489203 - MTEa LTR MaLR -198 172 29 4 903 277 270 131 60 chr12 41768349 41768611 -79488919 - B4 SINE B4 -8 284 5 4 903 348 224 39 26 chr12 41768853 41768931 -79488599 + B1_Mur1 SINE Alu 68 146 -3 4 903 1444 209 103 0 chr12 41769055 41769386 -79488144 + MTD LTR MaLR 4 368 -51 4 903 329 221 36 1 chr12 41769435 41769527 -79488003 + MTD LTR MaLR 267 418 -1 4 903 519 95 0 0 chr12 41769666 41769740 -79487790 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 4 903 635 228 173 11 chr12 41770027 41770218 -79487312 + MTD LTR MaLR 28 249 -170 4 903 24 32 0 0 chr12 41770321 41770352 -79487178 + AT_rich Low_complexity Low_complexity 1 31 0 4 903 639 256 31 19 chr12 41770364 41770523 -79487007 - RSINE1 SINE B4 0 165 5 4 903 186 133 0 0 chr12 41770639 41770669 -79486861 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 5 903 204 150 25 0 chr12 41770669 41770709 -79486821 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 903 478 194 35 0 chr12 41772051 41772161 -79485369 - B1_Mus1 SINE Alu -1 148 34 5 903 818 215 126 0 chr12 41772193 41772384 -79485146 - B3 SINE B2 -1 215 1 5 903 641 227 0 23 chr12 41774718 41774849 -79482681 + B1F SINE Alu 3 130 -19 5 903 499 272 82 83 chr12 41774891 41775111 -79482419 + B3A SINE B2 1 214 -2 5 903 611 211 16 31 chr12 41775293 41775420 -79482110 + RMER20B LTR ERVK 1 125 -502 5 903 266 379 76 17 chr12 41776077 41776313 -79481217 - L2c LINE L2 -81 3306 3057 5 903 29 90 0 0 chr12 41777100 41777178 -79480352 + AT_rich Low_complexity Low_complexity 1 78 0 5 903 24 0 0 0 chr12 41777287 41777311 -79480219 + AT_rich Low_complexity Low_complexity 1 24 0 5 903 356 345 7 35 chr12 41777484 41777628 -79479902 - L1MC4 LINE L1 -1066 6976 6837 5 903 297 347 24 8 chr12 41778147 41778272 -79479258 - Tigger9a DNA Tigger -9 723 597 5 903 600 256 24 77 chr12 41778508 41778687 -79478843 + B3A SINE B2 1 169 -29 5 903 548 40 13 0 chr12 41778687 41778762 -79478768 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 903 600 256 24 77 chr12 41778762 41778789 -79478741 + B3A SINE B2 170 196 -2 5 903 21 71 0 0 chr12 41779082 41779124 -79478406 + AT_rich Low_complexity Low_complexity 1 42 0 5 903 802 212 57 29 chr12 41779242 41779417 -79478113 - B3A SINE B2 -18 180 1 5 903 1350 146 236 3 chr12 41779473 41779769 -79477761 - ORR1B2 LTR MaLR 0 367 3 5 903 217 227 0 0 chr12 41780032 41780076 -79477454 + CT-rich Low_complexity Low_complexity 2 45 0 5 903 884 214 34 23 chr12 41780120 41780297 -79477233 - B3 SINE B2 -37 179 1 5 903 306 106 0 0 chr12 41781614 41781661 -79475869 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 903 408 320 77 13 chr12 41782308 41782463 -79475067 - RSINE1 SINE B4 0 165 1 5 903 573 325 19 33 chr12 41783341 41783551 -79473979 - B4A SINE B4 0 292 86 5 903 285 29 0 0 chr12 41783716 41783750 -79473780 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 5 903 243 0 0 0 chr12 41783750 41783776 -79473754 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 5 903 379 307 46 23 chr12 41783793 41783923 -79473607 - B1F1 SINE Alu 0 149 17 5 903 252 234 0 0 chr12 41784074 41784121 -79473409 + MTE2a LTR MaLR 7 53 -326 5 903 392 154 89 13 chr12 41784121 41784200 -79473330 + MTD LTR MaLR 314 398 -21 5 903 804 167 28 28 chr12 41784336 41784478 -79473052 - B1_Mur2 SINE Alu -6 143 2 5 903 4477 36 0 0 chr12 41786249 41786777 -79470753 + L1Md_F2 LINE L1 6043 6570 -12 5 903 333 0 0 0 chr12 41788392 41788429 -79469101 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 903 4632 123 44 28 chr12 41789091 41789887 -79467643 - RMER17D2 LTR ERVK 0 809 1 5 903 269 241 40 67 chr12 41790201 41790315 -79467215 + MTE2b LTR MaLR 261 378 -1 5 903 431 159 167 24 chr12 41790500 41790584 -79466946 + B1_Mur2 SINE Alu 53 148 -1 5 903 520 189 63 0 chr12 41790611 41790722 -79466808 + B3 SINE B2 90 207 -9 5 903 282 277 0 0 chr12 41791436 41791501 -79466029 - B1_Mur1 SINE Alu -2 147 83 5 903 21 36 0 0 chr12 41791523 41791551 -79465979 + AT_rich Low_complexity Low_complexity 1 28 0 5 903 603 212 8 0 chr12 41791927 41792045 -79465485 + B3A SINE B2 1 119 -79 5 903 257 256 45 34 chr12 41792367 41792456 -79465074 - MTE2a LTR MaLR 0 379 290 5 903 378 115 0 0 chr12 41792638 41792699 -79464831 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 903 384 77 0 0 chr12 41792707 41792759 -79464771 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 903 211 115 19 37 chr12 41792847 41792901 -79464629 + A-rich Low_complexity Low_complexity 3 55 0 5 903 335 118 26 26 chr12 41793056 41793134 -79464396 + GA-rich Low_complexity Low_complexity 5 82 0 5 903 841 57 24 8 chr12 41793741 41793864 -79463666 + (TTTCC)n Simple_repeat Simple_repeat 5 129 0 5 903 206 138 14 71 chr12 41793867 41793937 -79463593 + CT-rich Low_complexity Low_complexity 3 68 0 5 903 233 312 62 0 chr12 41794740 41794804 -79462726 - ID4 SINE ID 0 83 16 5 903 716 238 20 0 chr12 41795371 41795518 -79462012 + B1_Mur4 SINE Alu 1 150 0 5 903 230 396 37 19 chr12 41795690 41795798 -79461732 - RSINE1 SINE B4 0 165 56 5 903 1868 172 9 27 chr12 41796894 41797222 -79460308 + ORR1B2 LTR MaLR 1 322 -45 5 903 1735 174 29 13 chr12 41797563 41798221 -79459309 + Lx5 LINE L1 892 1560 -4317 5 903 9331 192 21 186 chr12 41798214 41800927 -79456603 + Lx5 LINE L1 2990 5148 -732 5 903 4561 61 12 10 chr12 41800927 41801526 -79456004 - L1Md_F2 LINE L1 -1 6581 5982 5 903 9331 192 21 186 chr12 41801526 41802224 -79455306 + Lx5 LINE L1 5149 5839 -41 5 903 3356 43 0 5 chr12 41802224 41802622 -79454908 - MTA_Mm LTR MaLR 0 396 1 5 903 7835 66 18 7 chr12 41802622 41803781 -79453749 - MTA_Mm-int LTR MaLR 0 1098 1 5 903 4719 190 72 17 chr12 41803781 41804861 -79452669 + Lx5 LINE L1 5840 6979 -71 5 903 191 61 30 0 chr12 41804962 41804995 -79452535 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 903 349 83 0 0 chr12 41804997 41805045 -79452485 + ORR1B2 LTR MaLR 312 359 -8 5 903 301 344 124 16 chr12 41805607 41805793 -79451737 - B3 SINE B2 -1 215 10 5 903 696 293 19 0 chr12 41805641 41805798 -79451732 - RSINE1 SINE B4 0 165 6 5 903 1230 211 125 4 chr12 41805794 41806075 -79451455 + MTD LTR MaLR 5 319 -100 5 903 1110 76 14 0 chr12 41806095 41806239 -79451291 + B1_Mus1 SINE Alu 1 146 -2 5 903 188 0 74 0 chr12 41806241 41806268 -79451262 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 903 638 305 61 6 chr12 41806619 41806784 -79450746 - B3 SINE B2 -40 176 3 5 903 2762 149 139 45 chr12 41806899 41807525 -79450005 + RMER6C LTR ERVK 3 687 -3 5 903 1267 90 23 0 chr12 41808123 41808300 -79449230 + B2_Mm2 SINE B2 1 181 -14 5 903 411 138 266 23 chr12 41808308 41808437 -79449093 + B2_Mm2 SINE B2 24 187 -8 5 903 536 261 105 73 chr12 41808757 41808976 -79448554 - AmnSINE1 SINE SINE -147 428 203 5 903 394 288 0 51 chr12 41810110 41810227 -79447303 + PB1D10 SINE Alu 1 111 -6 5 903 198 0 0 0 chr12 41810726 41810748 -79446782 + (T)n Simple_repeat Simple_repeat 1 22 0 5 903 516 326 29 17 chr12 41811611 41811786 -79445744 - Tigger5 DNA MER2_type -2197 209 33 5 904 553 249 213 53 chr12 41812342 41812567 -79444963 - MER112 DNA MER1_type 0 261 1 5 904 249 322 33 22 chr12 41812746 41812838 -79444692 + MER5A DNA MER1_type 14 106 -83 5 904 460 305 42 98 chr12 41813061 41813254 -79444276 - B3 SINE B2 -34 182 1 5 904 2040 4 0 0 chr12 41813433 41813662 -79443868 + L1Md_T LINE L1 6354 6582 0 5 904 195 42 0 0 chr12 41813795 41813819 -79443711 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 5 904 330 186 0 48 chr12 41813820 41813882 -79443648 - ID4 SINE ID -9 74 16 5 904 327 330 132 55 chr12 41814062 41814425 -79443105 + MLT1H2 LTR MaLR 95 485 -4 5 904 785 330 145 27 chr12 41814511 41815136 -79442394 + MLT1H2-int LTR MaLR 88 899 -590 5 904 7972 42 1 0 chr12 41815176 41816203 -79441327 - L1Md_T LINE L1 0 6582 5550 5 904 198 71 0 0 chr12 41816258 41816286 -79441244 + (A)n Simple_repeat Simple_repeat 1 28 0 5 904 340 297 98 98 chr12 41816663 41816827 -79440703 + MLT1H2 LTR MaLR 3 166 -323 5 904 411 21 0 0 chr12 41817201 41817249 -79440281 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 5 904 1051 154 55 20 chr12 41817434 41817633 -79439897 + B3 SINE B2 1 206 -10 5 904 40 59 0 0 chr12 41817805 41817873 -79439657 + AT_rich Low_complexity Low_complexity 1 68 0 5 904 379 253 185 19 chr12 41818003 41818160 -79439370 - B3A SINE B2 -15 183 1 5 904 1000 187 70 0 chr12 41818231 41818445 -79439085 - Lx3C LINE L1 -2 6974 6746 5 904 1003 132 49 11 chr12 41818434 41818618 -79438912 + Lx3C LINE L1 6508 6698 -278 5 904 217 350 10 20 chr12 41819076 41819175 -79438355 + CT-rich Low_complexity Low_complexity 3 100 0 5 904 216 0 0 0 chr12 41819239 41819263 -79438267 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 904 748 292 108 48 chr12 41819368 41819739 -79437791 + Tigger7 DNA MER2_type 2098 2490 -1 5 904 207 0 0 0 chr12 41820130 41820153 -79437377 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 904 530 298 76 0 chr12 41820156 41820287 -79437243 - RSINE1 SINE B4 -22 143 3 5 904 311 161 0 17 chr12 41820390 41820450 -79437080 - ORR1C1 LTR MaLR -5 373 312 5 904 1782 144 53 19 chr12 41820588 41820907 -79436623 - ORR1C1 LTR MaLR -48 330 1 5 904 402 286 61 0 chr12 41820986 41821084 -79436446 - PB1D9 SINE Alu -11 109 6 5 904 24 0 0 0 chr12 41821110 41821134 -79436396 + AT_rich Low_complexity Low_complexity 1 24 0 5 904 763 151 29 6 chr12 41821570 41821743 -79435787 + CT-rich Low_complexity Low_complexity 1 177 0 5 904 265 247 31 0 chr12 41821763 41821860 -79435670 - Lx6 LINE L1 -27 7433 7334 5 904 230 220 40 0 chr12 41821938 41821988 -79435542 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 5 904 881 246 9 84 chr12 41821995 41822221 -79435309 - B3 SINE B2 0 216 8 5 904 254 329 35 47 chr12 41822144 41822230 -79435300 - RSINE1 SINE B4 -80 85 1 5 904 1058 264 51 11 chr12 41822649 41823005 -79434525 - ORR1D2 LTR MaLR 0 370 1 5 904 387 286 135 56 chr12 41823104 41824083 -79433447 - L1MA5 LINE L1 -375 5925 4882 5 904 337 294 163 7 chr12 41824113 41824260 -79433270 - B3A SINE B2 -28 170 1 5 904 713 272 77 8 chr12 41824267 41824709 -79432821 - L1MA5 LINE L1 -1019 4861 4365 5 904 455 276 56 7 chr12 41824743 41824885 -79432645 - RSINE1 SINE B4 -13 152 4 5 904 4928 176 53 29 chr12 41825702 41826791 -79430739 + Lx2B LINE L1 5881 6995 -5 5 904 186 275 0 0 chr12 41826855 41826924 -79430606 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 904 277 355 51 0 chr12 41827029 41827167 -79430363 - B4A SINE B4 -146 146 2 5 904 2056 194 50 28 chr12 41828702 41829400 -79428130 - RMER3D-int LTR ERVK -1309 1533 377 5 904 891 221 100 71 chr12 41829409 41830073 -79427457 - RMER3D-int LTR ERVK -1692 1150 1 6 904 671 182 360 11 chr12 41830073 41830422 -79427108 - RLTR17 LTR ERVK 0 692 222 6 904 306 0 0 0 chr12 41830461 41830495 -79427035 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 6 904 207 0 0 0 chr12 41830533 41830556 -79426974 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 904 497 139 0 0 chr12 41830563 41830642 -79426888 - ORR1B2 LTR MaLR -33 334 256 6 904 207 0 0 0 chr12 41830667 41830690 -79426840 + (T)n Simple_repeat Simple_repeat 1 23 0 6 904 1195 161 292 0 chr12 41831520 41831811 -79425719 - ORR1C2 LTR MaLR -2 376 1 6 904 5168 234 49 39 chr12 41831811 41832372 -79425158 - ORR1C2-int LTR MaLR 0 1370 787 6 904 540 0 0 0 chr12 41832372 41832432 -79425098 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 904 306 0 0 0 chr12 41832432 41832465 -79425065 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 904 5168 234 49 39 chr12 41832465 41832646 -79424884 - ORR1C2-int LTR MaLR -584 786 601 6 904 765 79 0 0 chr12 41832646 41832760 -79424770 + (CA)n Simple_repeat Simple_repeat 1 114 0 6 904 5168 234 49 39 chr12 41832760 41833370 -79424160 - ORR1C2-int LTR MaLR -770 600 4 6 904 1420 169 150 40 chr12 41833371 41833531 -79423999 - ORR1C2 LTR MaLR 0 384 190 6 904 782 21 0 10 chr12 41833531 41833628 -79423902 + (GGAGA)n Simple_repeat Simple_repeat 5 100 0 6 904 1420 169 150 40 chr12 41833628 41833813 -79423717 - ORR1C2 LTR MaLR -195 189 1 6 904 645 312 24 19 chr12 41834039 41834251 -79423279 - B4A SINE B4 -78 214 2 6 904 322 279 35 11 chr12 41834495 41834582 -79422948 + PB1D9 SINE Alu 11 99 -21 6 904 244 258 47 31 chr12 41835112 41835132 -79422398 - B4A SINE B4 -4 288 270 6 904 420 37 0 0 chr12 41835132 41835186 -79422344 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 904 244 258 47 31 chr12 41835186 41835229 -79422301 - B4A SINE B4 -23 269 224 6 904 549 259 58 0 chr12 41835236 41835375 -79422155 - B1_Mur2 SINE Alu -1 148 2 6 904 40 0 0 0 chr12 41835403 41835443 -79422087 + AT_rich Low_complexity Low_complexity 1 40 0 6 904 50 0 0 0 chr12 41835457 41835507 -79422023 + AT_rich Low_complexity Low_complexity 1 50 0 6 904 395 291 98 46 chr12 41835561 41835734 -79421796 - RLTR18 LTR ERVK -67 549 368 6 904 502 250 105 0 chr12 41836109 41836261 -79421269 + Lx8 LINE L1 7113 7280 -193 6 904 758 291 40 22 chr12 41836269 41836494 -79421036 - B4A SINE B4 -62 230 2 6 904 237 143 0 109 chr12 41840094 41840149 -79417381 - B4A SINE B4 0 292 244 6 904 333 68 0 0 chr12 41840425 41840469 -79417061 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 904 627 281 67 40 chr12 41841200 41841635 -79415895 - L1MC4a LINE L1 -1 7881 7334 6 904 585 42 0 0 chr12 41841730 41841802 -79415728 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 6 904 254 269 96 7 chr12 41842227 41842362 -79415168 + MER33 DNA MER1_type 172 318 -6 6 904 589 253 75 24 chr12 41842614 41842832 -79414698 - MTEa LTR MaLR 0 379 137 6 904 234 91 0 0 chr12 41844088 41844121 -79413409 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 904 622 341 0 0 chr12 41844123 41844287 -79413243 - B3A SINE B2 -31 167 4 6 904 370 358 114 66 chr12 41844728 41845255 -79412275 + L1MEg LINE L1 223 774 -5310 6 904 210 91 0 0 chr12 41845555 41845588 -79411942 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 904 187 288 61 108 chr12 41848232 41848343 -79409187 + MIR3 SINE MIR 17 129 -79 6 904 258 234 51 25 chr12 41848343 41848422 -79409108 - ID4_ SINE ID -2 81 1 6 904 187 288 61 108 chr12 41848422 41848458 -79409072 + MIR3 SINE MIR 130 157 -51 6 904 218 275 80 35 chr12 41848624 41848737 -79408793 - L2a LINE L2 -9 3417 3300 6 904 347 252 26 70 chr12 41850501 41850616 -79406914 - PB1D10 SINE Alu -7 110 1 6 904 782 106 7 0 chr12 41850620 41850761 -79406769 + (TCTA)n Simple_repeat Simple_repeat 1 142 0 6 904 1414 299 66 79 chr12 41851366 41851906 -79405624 - Lx8 LINE L1 -274 7199 6669 6 904 1190 100 0 6 chr12 41851906 41852087 -79405443 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 904 1176 68 0 0 chr12 41852095 41852242 -79405288 - B1_Mus2 SINE Alu 0 147 1 6 904 1414 299 66 79 chr12 41852242 41852448 -79405082 - Lx8 LINE L1 -805 6668 6454 6 904 1211 196 268 67 chr12 41854946 41855322 -79402208 + RLTR20C LTR ERVK 1 446 -105 6 904 378 42 0 0 chr12 41855322 41855370 -79402160 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 904 645 219 61 49 chr12 41855370 41855467 -79402063 + RLTR20C LTR ERVK 447 550 -1 6 904 22 0 0 0 chr12 41855518 41855540 -79401990 + AT_rich Low_complexity Low_complexity 1 22 0 6 904 519 17 0 0 chr12 41855888 41855948 -79401582 + (CTA)n Simple_repeat Simple_repeat 2 61 0 6 904 310 306 13 15 chr12 41856390 41856538 -79400992 - MIRb SINE MIR -20 248 98 6 904 287 186 0 0 chr12 41856655 41856714 -79400816 - B1_Mur1 SINE Alu 0 149 91 6 904 501 17 0 0 chr12 41856820 41856878 -79400652 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 904 527 321 7 0 chr12 41856944 41857084 -79400446 - RSINE1 SINE B4 -22 143 3 6 904 574 245 78 14 chr12 41858280 41858421 -79399109 - RSINE1 SINE B4 -6 159 10 6 904 427 177 427 0 chr12 41858520 41858616 -79398914 - PB1D9 SINE Alu -10 138 2 6 904 296 250 58 35 chr12 41858544 41858631 -79398899 - MT2B LTR ERVL -360 241 153 6 904 798 208 97 53 chr12 41859155 41859475 -79398055 - Lx9 LINE L1 0 7644 7311 6 904 873 206 105 51 chr12 41859476 41859772 -79397758 + Lx9 LINE L1 6939 7250 -394 6 904 641 250 43 0 chr12 41860947 41861087 -79396443 + RSINE1 SINE B4 3 148 -17 6 904 1012 73 22 0 chr12 41861888 41862025 -79395505 - B1_Mus1 SINE Alu -8 140 1 6 904 219 36 0 0 chr12 41862110 41862138 -79395392 + (CCA)n Simple_repeat Simple_repeat 2 29 0 6 904 286 308 23 89 chr12 41862381 41862595 -79394935 + MIRc SINE MIR 3 202 -66 6 904 234 128 0 0 chr12 41862941 41862980 -79394550 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 6 904 460 198 19 19 chr12 41863017 41863125 -79394405 - B1_Mur4 SINE Alu -2 148 41 6 904 39500 4 0 0 chr12 41863479 41869847 -79387683 - L1Md_A LINE L1 0 6582 214 6 904 195 186 0 0 chr12 41870167 41870210 -79387320 + (ATG)n Simple_repeat Simple_repeat 2 44 0 6 904 257 302 58 41 chr12 41870223 41870344 -79387186 + Kanga1d DNA Tc2 481 603 -6 6 904 264 149 0 0 chr12 41871038 41871085 -79386445 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 904 350 315 12 53 chr12 41871088 41871259 -79386271 - RSINE1 SINE B4 0 165 2 6 904 356 231 58 87 chr12 41871423 41871527 -79386003 + MT2B LTR ERVL 160 260 -341 6 904 567 178 79 0 chr12 41871434 41871535 -79385995 + B1_Mur3 SINE Alu 7 115 -34 6 904 298 300 0 0 chr12 41871594 41871674 -79385856 + CT-rich Low_complexity Low_complexity 4 83 0 6 904 249 252 218 37 chr12 41872048 41872402 -79385128 - L1M2 LINE L1 -1081 5062 4645 6 904 686 278 107 25 chr12 41872411 41872803 -79384727 + L1MA6 LINE L1 5541 5964 -336 6 904 320 139 38 12 chr12 41873186 41873266 -79384264 + GA-rich Low_complexity Low_complexity 5 86 0 6 904 187 333 43 11 chr12 41873553 41873647 -79383883 + L2c LINE L2 3283 3379 -8 6 904 402 181 29 0 chr12 41874226 41874331 -79383199 + (TA)n Simple_repeat Simple_repeat 1 108 0 6 904 416 113 28 0 chr12 41875441 41875512 -79382018 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 6 904 186 71 0 0 chr12 41875517 41875545 -79381985 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 6 904 633 273 13 13 chr12 41875625 41875777 -79381753 - RSINE1 SINE B4 -11 154 3 6 904 1091 173 22 52 chr12 41876293 41876525 -79381005 + URR1B DNA MER1_type 1 225 0 6 904 367 134 119 0 chr12 41876771 41876838 -79380692 - HAL1-3A_ME LINE L1 -808 2050 1976 6 904 810 252 100 35 chr12 41876882 41877141 -79380389 - B4A SINE B4 -16 276 1 6 904 271 255 97 28 chr12 41877142 41877287 -79380243 + MER2 DNA MER2_type 120 274 -71 6 904 943 259 24 0 chr12 41877984 41878189 -79379341 + B3 SINE B2 1 210 -6 6 904 26 50 0 0 chr12 41878408 41878448 -79379082 + AT_rich Low_complexity Low_complexity 1 40 0 6 904 198 0 0 0 chr12 41878988 41879010 -79378520 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 904 210 164 0 0 chr12 41880305 41880360 -79377170 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 904 546 290 17 0 chr12 41881678 41881854 -79375676 - B3A SINE B2 -16 182 4 6 904 909 279 105 9 chr12 41882938 41883263 -79374267 - ORR1D2 LTR MaLR -14 356 1 6 904 195 303 32 53 chr12 41883808 41883902 -79373628 + L2b LINE L2 3025 3116 -259 6 904 4399 165 77 45 chr12 41884346 41884490 -79373040 - RLTR25B LTR ERVK 0 1028 898 6 904 3918 61 6 17 chr12 41884490 41885009 -79372521 - L1_Mus1 LINE L1 0 6567 6055 6 904 4399 165 77 45 chr12 41885009 41885807 -79371723 - RLTR25B LTR ERVK -131 897 55 6 904 528 234 48 62 chr12 41887175 41887321 -79370209 + RSINE1 SINE B4 8 151 -14 6 904 369 0 0 0 chr12 41887322 41887363 -79370167 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 904 642 269 0 0 chr12 41887612 41887746 -79369784 + B1F SINE Alu 3 136 -13 6 904 215 284 28 56 chr12 41888012 41888083 -79369447 + ID4 SINE ID 6 74 -9 6 904 656 333 77 40 chr12 41889541 41890010 -79367520 - Arthur1B DNA Tip100 -242 983 498 6 904 207 0 0 0 chr12 41890358 41890381 -79367149 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 904 384 341 155 18 chr12 41890388 41890666 -79366864 - MLT1E1A LTR MaLR -252 428 113 6 904 271 281 29 46 chr12 41890909 41891084 -79366446 - L1MEc LINE L1 -4245 2155 1984 6 904 24 0 0 0 chr12 41891087 41891111 -79366419 + AT_rich Low_complexity Low_complexity 1 24 0 6 904 21 0 0 0 chr12 41891147 41891168 -79366362 + AT_rich Low_complexity Low_complexity 1 21 0 6 904 242 308 47 28 chr12 41892979 41893086 -79364444 + MIR SINE MIR 78 186 -76 6 904 313 234 0 0 chr12 41893176 41893240 -79364290 - B1_Mus2 SINE Alu -21 126 63 6 904 929 168 152 10 chr12 41893353 41893551 -79363979 + URR1A DNA MER1_type 1 226 0 6 904 577 289 100 6 chr12 41893617 41894004 -79363526 - L1MB7 LINE L1 -296 5866 5445 6 904 415 372 115 21 chr12 41894605 41894765 -79362765 - L2 LINE L2 -629 2790 2611 6 904 192 40 0 0 chr12 41894765 41894790 -79362740 + (TTG)n Simple_repeat Simple_repeat 2 26 0 6 904 415 372 115 21 chr12 41894790 41895098 -79362432 - L2 LINE L2 -809 2610 2278 6 904 284 329 0 47 chr12 41895202 41895288 -79362242 - MER58A DNA MER1_type -142 82 1 6 904 195 260 0 20 chr12 41895533 41895584 -79361946 - L3 LINE CR1 -272 4217 4168 7 904 537 92 0 0 chr12 41896141 41896217 -79361313 + (CATA)n Simple_repeat Simple_repeat 1 76 0 7 904 195 204 0 0 chr12 41896217 41896271 -79361259 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 904 21 57 0 0 chr12 41896436 41896471 -79361059 + AT_rich Low_complexity Low_complexity 1 35 0 7 904 691 143 0 22 chr12 41897433 41897569 -79359961 + GA-rich Low_complexity Low_complexity 3 135 0 7 904 4064 52 0 2 chr12 41898549 41899049 -79358481 - L1Md_F2 LINE L1 -15 6567 6069 7 904 9719 47 7 1 chr12 41899049 41900508 -79357022 + L1Md_F2 LINE L1 4571 6042 -540 7 904 181 385 43 22 chr12 41900543 41900681 -79356849 + L2c LINE L2 3242 3382 -5 7 904 22 0 0 0 chr12 41900855 41900877 -79356653 + AT_rich Low_complexity Low_complexity 1 22 0 7 904 412 333 41 6 chr12 41900888 41901057 -79356473 + ID_B1 SINE B4 2 176 -48 7 904 180 125 0 0 chr12 41901074 41901106 -79356424 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 7 904 387 0 0 0 chr12 41901552 41901595 -79355935 + (A)n Simple_repeat Simple_repeat 1 43 0 7 904 649 49 216 0 chr12 41902020 41902122 -79355408 - URR1B DNA MER1_type -1 224 101 7 904 304 154 79 99 chr12 41902033 41902134 -79355396 + CYRA11_Mm Unknown Y-chromosome 217 315 -302 7 904 694 221 7 0 chr12 41902453 41902593 -79354937 + B1_Mus2 SINE Alu 7 147 0 7 904 1215 288 84 0 chr12 41905492 41905863 -79351667 - MTD LTR MaLR 0 419 18 7 904 500 241 28 55 chr12 41906165 41906310 -79351220 + B1F SINE Alu 9 149 0 7 904 311 240 10 29 chr12 41906562 41906665 -79350865 - L1MC4 LINE L1 -158 7884 7784 7 904 301 261 215 47 chr12 41906776 41906925 -79350605 - L1MC4 LINE L1 -430 7612 7439 7 904 473 216 18 38 chr12 41907202 41907323 -79350207 - B1_Mur1 SINE Alu -7 142 12 7 904 293 200 68 110 chr12 41907221 41907339 -79350191 - MT2B LTR ERVL -326 275 163 7 904 590 331 42 0 chr12 41907418 41907584 -79349946 - ID_B1 SINE B4 -49 175 3 7 904 1176 206 27 113 chr12 41907611 41908055 -79349475 - Lx7 LINE L1 -17 7679 7274 7 904 269 257 13 13 chr12 41908100 41908175 -79349355 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 904 210 324 25 67 chr12 41908230 41908349 -79349181 - PB1D7 SINE Alu -6 114 1 7 904 2817 76 0 5 chr12 41909743 41910224 -79347306 - L1Md_F2 LINE L1 0 6582 6202 7 904 264 59 0 0 chr12 41910238 41910272 -79347258 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 904 1199 76 6 0 chr12 41910272 41910430 -79347100 - B2_Mm1t SINE B2 -33 160 2 7 904 34 72 0 0 chr12 41910524 41910593 -79346937 + AT_rich Low_complexity Low_complexity 1 69 0 7 904 398 0 31 31 chr12 41910896 41910960 -79346570 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 904 1130 58 0 0 chr12 41910960 41911097 -79346433 - B1_Mm SINE Alu -10 137 1 7 904 657 278 45 18 chr12 41911697 41911917 -79345613 + B4A SINE B4 5 230 -62 7 904 607 305 28 6 chr12 41912278 41912456 -79345074 - B3A SINE B2 -16 182 1 7 904 342 318 0 0 chr12 41913135 41913242 -79344288 + PB1D10 SINE Alu 1 107 -10 7 904 349 227 30 0 chr12 41913330 41913396 -79344134 - B1F2 SINE Alu -79 70 3 7 904 317 284 0 58 chr12 41913334 41913420 -79344110 - B4 SINE B4 -143 149 69 7 904 193 214 24 0 chr12 41913820 41913862 -79343668 + MIRm SINE MIR 162 204 -72 7 904 351 0 0 0 chr12 41913997 41914036 -79343494 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 904 289 387 11 5 chr12 41916090 41916277 -79341253 - Lx8 LINE L1 -251 7222 7035 7 904 22 56 0 0 chr12 41916381 41916417 -79341113 + AT_rich Low_complexity Low_complexity 1 36 0 7 904 292 277 0 46 chr12 41916437 41916524 -79341006 - RSINE1 SINE B4 0 165 83 7 904 345 154 31 0 chr12 41916602 41916667 -79340863 - HAL1-3A_ME LINE L1 -816 2042 1976 7 904 189 0 0 0 chr12 41916667 41916688 -79340842 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 7 904 228 222 0 0 chr12 41916728 41916800 -79340730 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 904 253 403 38 52 chr12 41916851 41917063 -79340467 - B4 SINE B4 0 292 84 7 904 207 0 0 0 chr12 41917496 41917519 -79340011 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 904 1201 187 182 3 chr12 41918604 41918918 -79338612 - RMER5 LTR ERV1 0 534 165 7 904 263 301 106 36 chr12 41919041 41919228 -79338302 - RMER4A LTR ERVK -370 215 13 7 904 243 0 0 0 chr12 41919243 41919270 -79338260 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 904 741 208 66 42 chr12 41919324 41919490 -79338040 - RMER5 LTR ERV1 -364 170 1 7 904 444 285 150 16 chr12 41922194 41922447 -79335083 - L1MC2 LINE L1 -372 5972 5686 7 904 498 354 0 7 chr12 41922463 41922611 -79334919 - ID_B1 SINE B4 -9 215 69 7 904 23 54 0 0 chr12 41922848 41922885 -79334645 + AT_rich Low_complexity Low_complexity 1 37 0 7 904 228 268 0 0 chr12 41923441 41923523 -79334007 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 904 351 362 7 55 chr12 41924246 41924392 -79333138 + RSINE1 SINE B4 2 140 -25 7 904 343 257 29 0 chr12 41927409 41927514 -79330016 + GA-rich Low_complexity Low_complexity 1 108 0 7 904 631 271 7 7 chr12 41927690 41927835 -79329695 - B1_Mur1 SINE Alu -3 146 2 7 904 477 0 0 0 chr12 41928043 41928096 -79329434 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 904 824 268 50 47 chr12 41928462 41928829 -79328701 + MTD LTR MaLR 5 419 0 7 904 2293 121 12 84 chr12 41929163 41929579 -79327951 - ORR1B1 LTR MaLR -8 386 1 7 904 748 169 167 43 chr12 41929766 41929952 -79327578 - URR1B DNA MER1_type -11 214 6 7 904 302 271 16 0 chr12 41929965 41930039 -79327491 - L1MC4a LINE L1 -387 7655 7563 7 904 3438 50 0 5 chr12 41930523 41930946 -79326584 - L1_Mus1 LINE L1 0 6567 6147 7 904 650 122 9 0 chr12 41931016 41931123 -79326407 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 7 904 613 301 57 65 chr12 41931184 41931657 -79325873 - Lx8 LINE L1 -32 7441 6973 7 904 25 0 0 0 chr12 41932289 41932314 -79325216 + AT_rich Low_complexity Low_complexity 1 25 0 7 904 247 250 67 0 chr12 41932506 41932566 -79324964 - L2b LINE L2 -224 3151 3088 7 904 649 194 112 0 chr12 41932569 41932703 -79324827 + B1_Mur2 SINE Alu 1 149 0 7 904 201 39 0 0 chr12 41932711 41932737 -79324793 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 904 367 106 0 29 chr12 41932769 41932837 -79324693 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 7 904 279 0 0 0 chr12 41933023 41933054 -79324476 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 904 257 224 147 39 chr12 41933160 41933262 -79324268 - B4A SINE B4 -44 248 136 7 904 237 397 0 68 chr12 41933775 41933967 -79323563 - L4 LINE RTE -1128 901 723 7 904 656 288 101 17 chr12 41934228 41934585 -79322945 - Charlie1 DNA MER1_type -20 2761 2375 7 904 642 244 55 99 chr12 41934837 41935019 -79322511 - B3A SINE B2 -9 186 13 7 904 21 0 0 0 chr12 41935826 41935847 -79321683 + AT_rich Low_complexity Low_complexity 1 21 0 7 904 2193 138 3 0 chr12 41937568 41937894 -79319636 + ORR1A2 LTR MaLR 1 327 0 7 904 25 75 0 0 chr12 41938278 41938331 -79319199 + AT_rich Low_complexity Low_complexity 1 53 0 7 904 1634 286 64 42 chr12 41938397 41939020 -79318510 - Lx8 LINE L1 -249 7224 6588 7 904 2326 132 171 5 chr12 41939020 41939469 -79318061 - RMER6C LTR ERVK 0 690 167 7 904 1395 257 73 28 chr12 41939471 41939565 -79317965 - RLTR20B3 LTR ERVK -3 538 450 7 904 222 128 0 0 chr12 41939565 41939604 -79317926 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 904 1395 249 72 23 chr12 41939604 41940026 -79317504 - RLTR20B3 LTR ERVK -95 482 1 7 904 554 117 372 8 chr12 41940026 41940149 -79317381 - RMER6C LTR ERVK -518 172 3 7 904 315 0 0 0 chr12 41940304 41940339 -79317191 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 904 1117 267 56 10 chr12 41940519 41940953 -79316577 - Lx8 LINE L1 -1766 5930 5446 7 904 25 0 0 0 chr12 41940994 41941019 -79316511 + AT_rich Low_complexity Low_complexity 1 25 0 7 904 3009 168 45 32 chr12 41941019 41941646 -79315884 - Lx3C LINE L1 -4 6972 6338 7 904 583 342 50 4 chr12 41941674 41941912 -79315618 + MTD LTR MaLR 2 250 -169 7 904 601 267 76 64 chr12 41941974 41942238 -79315292 + MTD LTR MaLR 153 419 0 7 904 27 62 0 0 chr12 41942979 41943027 -79314503 + AT_rich Low_complexity Low_complexity 1 48 0 7 905 21 36 0 0 chr12 41943360 41943388 -79314142 + AT_rich Low_complexity Low_complexity 1 28 0 7 905 369 0 0 0 chr12 41944026 41944067 -79313463 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 905 371 271 42 0 chr12 41944085 41944181 -79313349 - MTEa LTR MaLR -11 368 269 7 905 958 277 48 68 chr12 41944383 41944693 -79312837 - MTEa LTR MaLR -75 304 1 7 905 312 43 0 21 chr12 41947807 41947854 -79309676 + B1_Mus2 SINE Alu 13 58 -89 7 905 225 148 173 18 chr12 41947862 41947972 -79309558 + (CAAGG)n Simple_repeat Simple_repeat 3 129 0 7 905 293 158 74 62 chr12 41947977 41948058 -79309472 + RLTR25B LTR ERVK 428 509 -519 7 905 806 48 0 0 chr12 41947995 41948088 -79309442 + B1_Mm SINE Alu 42 134 -13 7 905 264 30 0 0 chr12 41948088 41948121 -79309409 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7 905 1164 80 148 5 chr12 41948377 41948579 -79308951 + L1_Mus3 LINE L1 6407 6637 -1 7 905 2137 135 35 20 chr12 41949620 41949968 -79307562 + MTB_Mm LTR MaLR 55 407 0 7 905 189 0 0 0 chr12 41950569 41950590 -79306940 + (TGG)n Simple_repeat Simple_repeat 2 22 0 7 905 1179 68 0 0 chr12 41952545 41952692 -79304838 + B1_Mm SINE Alu 1 147 0 7 905 189 0 0 0 chr12 41952692 41952713 -79304817 + (A)n Simple_repeat Simple_repeat 1 21 0 7 905 222 37 0 0 chr12 41952793 41952820 -79304710 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 905 230 336 77 0 chr12 41953001 41953105 -79304425 + ORR1E LTR MaLR 10 121 -238 8 905 3147 152 96 86 chr12 41953226 41953807 -79303723 - RLTR25A LTR ERVK -377 726 122 8 905 423 0 0 0 chr12 41953807 41953854 -79303676 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 8 905 3147 152 96 86 chr12 41953854 41953979 -79303551 - RLTR25A LTR ERVK -982 121 13 8 905 28 29 0 0 chr12 41954594 41954629 -79302901 + AT_rich Low_complexity Low_complexity 1 35 0 8 905 441 265 86 16 chr12 41955635 41955892 -79301638 - L1ME3B LINE L1 -283 5957 5683 8 905 295 262 59 12 chr12 41956303 41956388 -79301142 - PB1D10 SINE Alu -2 115 27 8 905 296 293 0 39 chr12 41956396 41956474 -79301056 - ID SINE ID -142 82 8 8 905 8157 28 0 0 chr12 41957173 41958370 -79299160 - L1Md_T LINE L1 -4 6578 5383 8 905 240 35 0 0 chr12 41959862 41959891 -79297639 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 905 5341 60 12 7 chr12 41960146 41960837 -79296693 - L1Md_F2 LINE L1 0 6582 5889 8 905 223 174 0 21 chr12 41960837 41960879 -79296651 + CT-rich Low_complexity Low_complexity 7 48 0 8 905 228 333 60 90 chr12 41960926 41961160 -79296370 - B4 SINE B4 -1 291 65 8 905 384 22 0 0 chr12 41961316 41961361 -79296169 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 8 905 286 146 15 39 chr12 41962998 41963069 -79294461 + ID4 SINE ID 2 72 -80 8 905 423 38 0 0 chr12 41963069 41963122 -79294408 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 905 261 253 29 87 chr12 41963122 41963154 -79294376 + BC1_Mm scRNA scRNA 73 99 -53 8 905 387 233 49 57 chr12 41963315 41963438 -79294092 - B1_Mur1 SINE Alu -1 148 27 8 905 632 330 58 82 chr12 41963532 41964132 -79293398 - L1MC4 LINE L1 -4803 1412 827 8 905 254 254 0 0 chr12 41964381 41964436 -79293094 - 5S rRNA rRNA -33 88 34 8 905 36 53 0 0 chr12 41964494 41964551 -79292979 + AT_rich Low_complexity Low_complexity 1 57 0 8 905 199 50 24 48 chr12 41966118 41966160 -79291370 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 8 905 276 243 5 53 chr12 41967366 41967442 -79290088 - ID4_ SINE ID -76 76 3 8 905 483 100 0 0 chr12 41967442 41967512 -79290018 + (TATG)n Simple_repeat Simple_repeat 4 73 0 8 905 393 205 54 43 chr12 41967598 41967690 -79289840 - RMER30 DNA MER1_type -108 94 2 8 905 27 49 0 0 chr12 41967718 41967759 -79289771 + AT_rich Low_complexity Low_complexity 1 41 0 8 905 893 304 81 17 chr12 41969019 41969160 -79288370 - L1MB1 LINE L1 -56 6112 5948 8 905 3378 28 8 0 chr12 41969160 41969553 -79287977 - MTA_Mm LTR MaLR 0 396 1 8 905 893 304 81 17 chr12 41969553 41969991 -79287539 - L1MB1 LINE L1 -221 5947 5497 8 905 444 51 0 0 chr12 41970040 41970099 -79287431 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 905 244 217 83 19 chr12 41970129 41970237 -79287293 - L1M2 LINE L1 -850 5462 5348 8 905 524 322 7 0 chr12 41970260 41970412 -79287118 + RSINE1 SINE B4 3 155 -10 8 905 538 267 101 31 chr12 41975736 41976027 -79281503 - Lx6 LINE L1 -788 6262 5922 8 905 1021 106 12 6 chr12 41977266 41977437 -79280093 + (TTTC)n Simple_repeat Simple_repeat 4 175 0 8 905 710 168 88 0 chr12 41977461 41977598 -79279932 - B1_Mur4 SINE Alu 0 150 2 8 905 750 277 22 6 chr12 41978000 41978178 -79279352 + B3A SINE B2 1 181 -17 8 905 633 27 0 0 chr12 41978192 41978267 -79279263 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 905 246 343 9 0 chr12 41979757 41979865 -79277665 - Charlie4 DNA MER1_type -1807 154 46 8 905 852 149 0 43 chr12 41980167 41980307 -79277223 + B1_Mus1 SINE Alu 2 135 -13 8 905 279 0 0 0 chr12 41980307 41980338 -79277192 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 8 905 372 104 0 0 chr12 41980381 41980448 -79277082 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 905 2554 49 37 0 chr12 41981127 41981451 -79276079 - L1Md_F3 LINE L1 -1 6583 6248 8 905 261 0 0 0 chr12 41981795 41981824 -79275706 + (TC)n Simple_repeat Simple_repeat 2 30 0 8 905 1021 106 0 27 chr12 41982019 41982204 -79275326 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 905 314 235 0 42 chr12 41982204 41982346 -79275184 + C-rich Low_complexity Low_complexity 5 140 0 8 905 2133 274 13 13 chr12 41982357 41982982 -79274548 - Lx5 LINE L1 -39 7011 6455 8 905 25 31 0 0 chr12 41983705 41983737 -79273793 + AT_rich Low_complexity Low_complexity 1 32 0 8 905 378 0 0 0 chr12 41983828 41983870 -79273660 + (T)n Simple_repeat Simple_repeat 1 42 0 8 905 285 118 0 0 chr12 41984043 41984094 -79273436 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 905 4342 232 61 50 chr12 41984175 41985177 -79272353 - Lx9 LINE L1 -24 7620 6635 8 905 2057 159 36 26 chr12 41985177 41985565 -79271965 + ORR1B1 LTR MaLR 1 392 -2 8 905 4342 232 61 50 chr12 41985565 41985992 -79271538 - Lx9 LINE L1 -1010 6634 6175 8 905 1229 182 28 21 chr12 41985991 41986282 -79271248 + L1_Rod LINE L1 4518 4810 -1037 8 905 1757 221 74 12 chr12 41986277 41986766 -79270764 + L1_Rod LINE L1 5260 5778 -69 8 905 422 311 61 25 chr12 41986803 41987080 -79270450 - L1MC1 LINE L1 -36 6297 6011 8 905 8481 121 23 9 chr12 41987323 41988696 -79268834 - Lx2B LINE L1 -23 6977 5587 8 905 231 88 0 0 chr12 41989088 41989122 -79268408 + (TATG)n Simple_repeat Simple_repeat 2 35 0 8 905 225 0 0 0 chr12 41989797 41989822 -79267708 + (T)n Simple_repeat Simple_repeat 1 25 0 8 905 191 250 0 14 chr12 41990929 41990998 -79266532 + GA-rich Low_complexity Low_complexity 4 71 0 8 905 245 317 77 0 chr12 41991021 41991125 -79266405 + MIRb SINE MIR 82 193 -75 8 905 193 337 104 10 chr12 41991482 41991578 -79265952 - L2a LINE L2 -254 3172 3068 8 905 923 186 40 40 chr12 41991741 41991993 -79265537 - RMER1C Other Other -1 1341 1090 8 905 2906 59 206 9 chr12 41991993 41992421 -79265109 - RLTR1B LTR ERV1 0 512 1 8 905 63437 20 1 0 chr12 41992421 41999971 -79257559 - MMERGLN-int LTR ERV1 0 7556 1 8 905 1952 83 45 23 chr12 42000000 42000401 -79257129 - RLTR1B LTR ERV1 -29 483 1 1 905 780 260 6 135 chr12 42000401 42000712 -79256818 - RMER1C Other Other -249 1093 823 2 905 225 204 0 0 chr12 42001113 42001157 -79256373 + A-rich Low_complexity Low_complexity 1 44 0 3 905 249 57 0 0 chr12 42001314 42001349 -79256181 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 905 21 0 0 0 chr12 42003018 42003039 -79254491 + AT_rich Low_complexity Low_complexity 1 21 0 5 905 733 168 0 0 chr12 42003460 42003579 -79253951 + B2_Mm2 SINE B2 5 123 -72 6 905 308 217 0 0 chr12 42004164 42004224 -79253306 + L3b LINE CR1 95 154 -328 7 905 296 282 119 51 chr12 42004459 42004754 -79252776 - L1MA7 LINE L1 0 6291 5977 8 905 1939 195 97 5 chr12 42004907 42005351 -79252179 + Lx9 LINE L1 7136 7620 -24 9 905 921 274 70 12 chr12 42006701 42006945 -79250585 + B4A SINE B4 13 270 -22 1 905 1317 131 18 5 chr12 42007152 42007374 -79250156 - Lx3_Mus LINE L1 0 7009 6785 1 905 1440 229 24 32 chr12 42007477 42007852 -79249678 + ORR1D1 LTR MaLR 1 372 -2 1 905 22 35 0 0 chr12 42008012 42008041 -79249489 + AT_rich Low_complexity Low_complexity 1 29 0 1 905 4909 85 20 6 chr12 42008082 42008767 -79248763 - L1_Mus4 LINE L1 -8 6628 5934 1 905 10166 49 5 0 chr12 42009361 42011321 -79246209 - L1Md_F3 LINE L1 -30 6554 4585 1 905 194 339 0 0 chr12 42011908 42011964 -79245566 + L4 LINE RTE 992 1047 -982 1 905 412 48 32 0 chr12 42012701 42012764 -79244766 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 905 285 75 0 0 chr12 42012979 42013019 -79244511 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 905 350 283 27 44 chr12 42013019 42013122 -79244408 - B3 SINE B2 -13 185 80 1 905 1132 119 45 6 chr12 42013526 42013704 -79243826 + B2_Mm2 SINE B2 1 185 -10 2 905 309 167 58 35 chr12 42013733 42013820 -79243710 - Lx9 LINE L1 0 7644 7556 2 905 285 81 32 16 chr12 42015179 42015242 -79242288 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 2 905 260 305 127 7 chr12 42015644 42015786 -79241744 + MER5A1 DNA MER1_type 2 160 -6 2 905 285 350 0 98 chr12 42015858 42015991 -79241539 + MER5A1 DNA MER1_type 17 136 -30 2 905 345 289 212 42 chr12 42018016 42018263 -79239267 - B4A SINE B4 0 292 4 2 905 840 276 58 17 chr12 42018433 42018794 -79238736 - L1M4 LINE L1 -3240 2906 2531 2 905 495 288 14 14 chr12 42019099 42019240 -79238290 + B4A SINE B4 2 142 -150 2 905 253 323 55 0 chr12 42020198 42020295 -79237235 - L2a LINE L2 -196 3179 3081 2 905 272 237 103 63 chr12 42020940 42021066 -79236464 + MIR SINE MIR 84 214 -48 2 905 225 263 28 83 chr12 42021130 42021238 -79236292 - MLT1B LTR MaLR -38 352 251 2 905 3443 25 2 0 chr12 42022656 42023051 -79234479 + MTA_Mm LTR MaLR 1 396 0 3 905 234 0 0 0 chr12 42023180 42023206 -79234324 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 905 1044 153 112 19 chr12 42023805 42024011 -79233519 - URR1B DNA MER1_type 0 225 1 3 905 301 206 28 18 chr12 42025947 42026056 -79231474 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 3 905 396 0 0 0 chr12 42027927 42027971 -79229559 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 905 791 158 108 43 chr12 42028344 42028576 -79228954 + Lx9 LINE L1 7391 7637 -7 3 905 505 295 85 81 chr12 42029669 42029916 -79227614 + LTR86A1 LTR ERVL 40 287 -226 3 905 316 222 0 0 chr12 42029903 42029957 -79227573 + LTR86A1 LTR ERVL 405 458 -55 3 905 217 433 0 0 chr12 42029986 42030090 -79227440 - MIR SINE MIR -68 140 37 3 905 841 238 31 5 chr12 42030902 42031096 -79226434 - B3 SINE B2 -16 200 2 3 905 693 209 7 7 chr12 42032056 42032210 -79225320 + RLTR42-int LTR ERVK 4998 5151 -371 3 905 229 289 24 24 chr12 42032743 42032828 -79224702 + L2 LINE L2 2795 2879 -540 4 905 770 269 14 19 chr12 42033194 42033410 -79224120 - B3 SINE B2 0 216 2 4 905 629 214 0 23 chr12 42033419 42033548 -79223982 - B1_Mur1 SINE Alu 0 149 24 4 905 884 104 44 7 chr12 42034440 42034576 -79222954 - B2_Mm2 SINE B2 -7 188 48 4 905 34 72 0 0 chr12 42035251 42035320 -79222210 + AT_rich Low_complexity Low_complexity 1 69 0 4 905 187 238 31 31 chr12 42036324 42036389 -79221141 - L3 LINE CR1 -4347 142 78 4 905 312 70 0 0 chr12 42038296 42038339 -79219191 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 905 207 0 0 0 chr12 42042569 42042592 -79214938 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 4 905 546 267 0 30 chr12 42042594 42042729 -79214801 - B1_Mm SINE Alu -15 132 2 4 905 1115 127 0 0 chr12 42044513 42044678 -79212852 + B2_Mm2 SINE B2 1 165 -30 4 905 193 359 19 0 chr12 42046280 42046386 -79211144 - MIRb SINE MIR -38 230 123 5 905 252 358 137 0 chr12 42046579 42046674 -79210856 + PB1D10 SINE Alu 4 111 -6 5 905 24 53 0 0 chr12 42046781 42046819 -79210711 + AT_rich Low_complexity Low_complexity 1 38 0 5 905 207 0 0 0 chr12 42047249 42047272 -79210258 + (T)n Simple_repeat Simple_repeat 1 23 0 5 905 326 352 110 55 chr12 42047703 42048121 -79209409 + L1MEc LINE L1 385 825 -5575 5 905 227 269 39 0 chr12 42048826 42048878 -79208652 - MTEb LTR MaLR -13 366 313 5 905 1020 105 29 0 chr12 42049006 42049178 -79208352 + (GGGGA)n Simple_repeat Simple_repeat 4 180 0 5 905 260 351 139 11 chr12 42049196 42049383 -79208147 - MLT2B3 LTR ERVL -341 213 3 5 905 430 377 63 10 chr12 42049386 42049686 -79207844 + L1MEc LINE L1 1922 2237 -4163 5 905 278 250 52 0 chr12 42049978 42050074 -79207456 + L1MEc LINE L1 2805 2905 -3414 5 905 22 0 0 0 chr12 42050379 42050401 -79207129 + AT_rich Low_complexity Low_complexity 1 22 0 5 905 315 0 0 0 chr12 42050919 42050954 -79206576 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 905 918 329 56 56 chr12 42052300 42052657 -79204873 - ORR1E LTR MaLR -2 357 1 6 905 387 0 0 0 chr12 42053031 42053074 -79204456 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 6 905 198 0 0 0 chr12 42054977 42054999 -79202531 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 6 905 566 279 53 0 chr12 42055026 42055216 -79202314 + B3 SINE B2 1 200 -16 6 905 261 0 0 0 chr12 42055520 42055549 -79201981 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 905 1195 60 12 6 chr12 42055745 42055914 -79201616 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 6 905 590 282 45 8 chr12 42055966 42056218 -79201312 + Lx7 LINE L1 5524 5822 -469 6 905 442 284 85 45 chr12 42056228 42056427 -79201103 - B4 SINE B4 -60 232 26 6 905 405 0 0 0 chr12 42056855 42056900 -79200630 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 905 274 289 129 108 chr12 42058947 42059226 -79198304 - Charlie1 DNA MER1_type -413 2368 2084 6 905 199 79 0 50 chr12 42062112 42062152 -79195378 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 905 2628 72 29 16 chr12 42063040 42063421 -79194109 - L1_Mus3 LINE L1 -6 6632 6247 7 905 454 331 105 51 chr12 42063801 42064173 -79193357 + MLT2B1 LTR ERVL 2 393 -127 7 905 220 189 27 0 chr12 42067130 42067204 -79190326 + GA-rich Low_complexity Low_complexity 1 76 0 7 905 626 225 0 0 chr12 42067255 42067366 -79190164 - PB1D9 SINE Alu -9 111 1 7 905 6247 152 85 1 chr12 42069379 42070513 -79187017 - Lx2B LINE L1 -13 6987 5759 7 905 22 35 0 0 chr12 42070658 42070687 -79186843 + AT_rich Low_complexity Low_complexity 1 29 0 7 905 1730 163 30 43 chr12 42072916 42073287 -79184243 - ORR1B2 LTR MaLR 0 367 2 7 905 252 0 0 0 chr12 42073360 42073388 -79184142 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 7 905 816 172 11 6 chr12 42073390 42073565 -79183965 + CT-rich Low_complexity Low_complexity 3 178 0 7 113 3072 238 49 110 chr12 42073587 42074675 -79182855 - RMER1B Other Other -2 1064 44 8 906 183 214 53 18 chr12 42075396 42075453 -79182077 - L3 LINE CR1 -3719 770 712 8 906 255 93 0 0 chr12 42075577 42075620 -79181910 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 906 378 0 0 0 chr12 42075904 42075946 -79181584 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 906 381 285 125 42 chr12 42075996 42076285 -79181245 - L1MA9 LINE L1 -33 6279 5967 8 906 369 0 0 0 chr12 42078511 42078552 -79178978 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 906 373 331 0 0 chr12 42080106 42080233 -79177297 + (TG)n Simple_repeat Simple_repeat 2 128 0 8 906 242 236 176 22 chr12 42080623 42080714 -79176816 + MLT1A1 LTR MaLR 121 225 -183 8 906 1161 49 115 12 chr12 42081303 42081468 -79176062 + B2_Mm2 SINE B2 2 183 -12 8 906 210 37 0 0 chr12 42081468 42081495 -79176035 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 906 665 257 34 0 chr12 42081503 42081678 -79175852 - B3 SINE B2 0 216 36 9 906 388 256 23 0 chr12 42081675 42081761 -79175769 - B4 SINE B4 -191 101 14 9 906 270 0 0 0 chr12 42081783 42081813 -79175717 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 9 906 202 319 0 32 chr12 42082205 42082299 -79175231 + T-rich Low_complexity Low_complexity 3 93 0 9 906 31 0 0 0 chr12 42083882 42083913 -79173617 + AT_rich Low_complexity Low_complexity 1 31 0 9 906 383 335 90 33 chr12 42083987 42084231 -79173299 + L2a LINE L2 3167 3424 -2 9 906 389 257 240 65 chr12 42085380 42085664 -79171866 - MLT1A0 LTR MaLR -7 358 25 9 906 495 228 80 66 chr12 42085930 42086156 -79171374 + Lx7 LINE L1 7420 7648 -48 9 906 66 25 0 0 chr12 42086166 42086246 -79171284 + AT_rich Low_complexity Low_complexity 1 80 0 9 906 788 241 0 0 chr12 42086278 42086419 -79171111 + B1_Mur3 SINE Alu 9 149 0 9 906 23 0 0 0 chr12 42086421 42086444 -79171086 + AT_rich Low_complexity Low_complexity 1 23 0 1 906 317 208 0 20 chr12 42087842 42087940 -79169590 + GA-rich Low_complexity Low_complexity 2 97 0 1 906 234 0 0 0 chr12 42088661 42088687 -79168843 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 906 1808 177 5 3 chr12 42089089 42089457 -79168073 + Lx6 LINE L1 4277 4645 -1235 1 906 2902 38 0 3 chr12 42089457 42089804 -79167726 - ORR1A0 LTR MaLR 0 346 1 1 906 2706 34 0 0 chr12 42089804 42090130 -79167400 - ORR1A0-int LTR MaLR 0 1792 1467 1 906 3118 11 37 0 chr12 42090130 42090484 -79167046 + IAPLTR1_Mm LTR ERVK 1 367 0 1 906 53080 22 17 2 chr12 42090484 42096860 -79160670 + IAPEz-int LTR ERVK 8 6481 0 1 906 3118 11 37 0 chr12 42096860 42097214 -79160316 + IAPLTR1_Mm LTR ERVK 1 367 0 1 906 10810 57 13 1 chr12 42097214 42098669 -79158861 - ORR1A0-int LTR MaLR -320 1472 1 1 906 2735 36 9 0 chr12 42098673 42099008 -79158522 - ORR1A0 LTR MaLR -8 338 1 1 906 5475 176 58 29 chr12 42099008 42099624 -79157906 + Lx6 LINE L1 4641 5246 -634 1 906 375 41 0 0 chr12 42099624 42099673 -79157857 + (CTAAA)n Simple_repeat Simple_repeat 3 51 0 1 906 5475 201 89 30 chr12 42099673 42100690 -79156840 + Lx6 LINE L1 5247 6357 -693 1 906 3219 184 52 9 chr12 42101148 42101789 -79155741 + RMER6D LTR ERVK 53 720 0 1 906 23 0 0 0 chr12 42102255 42102278 -79155252 + AT_rich Low_complexity Low_complexity 1 23 0 1 906 22 0 0 0 chr12 42102790 42102812 -79154718 + AT_rich Low_complexity Low_complexity 1 22 0 1 906 200 412 70 30 chr12 42102908 42103138 -79154392 - L2b LINE L2 -1 3374 3136 1 906 681 248 144 32 chr12 42103426 42103739 -79153791 - Lx9 LINE L1 -866 6778 6431 1 906 273 354 0 0 chr12 42103739 42103804 -79153726 + B3A SINE B2 116 180 -18 1 906 696 229 15 0 chr12 42104225 42104356 -79153174 - RSINE1 SINE B4 -32 133 1 1 906 28 0 0 0 chr12 42104499 42104527 -79153003 + AT_rich Low_complexity Low_complexity 1 28 0 1 906 441 116 0 0 chr12 42105185 42105254 -79152276 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 906 194 328 30 0 chr12 42105384 42105451 -79152079 + MIR SINE MIR 81 149 -59 1 906 33746 44 0 3 chr12 42105822 42111089 -79146441 + L1Md_T LINE L1 242 5588 -298 1 906 8591 27 0 0 chr12 42111090 42112086 -79145444 + L1Md_T LINE L1 5590 6585 0 1 906 624 256 0 0 chr12 42113772 42113944 -79143586 + CT-rich Low_complexity Low_complexity 2 173 0 1 906 1161 55 0 7 chr12 42113944 42114091 -79143439 - B1_Mus2 SINE Alu -1 146 1 1 906 416 319 53 26 chr12 42114796 42114986 -79142544 + MLT1A0 LTR MaLR 8 202 -163 1 906 481 318 149 5 chr12 42115413 42115628 -79141902 + MIR SINE MIR 13 258 -4 1 906 197 250 0 0 chr12 42115681 42115725 -79141805 - L2a LINE L2 -5 3421 3378 1 906 22 35 0 0 chr12 42116703 42116732 -79140798 + AT_rich Low_complexity Low_complexity 1 29 0 1 906 1340 164 2 1 chr12 42117934 42118164 -79139366 + L1_Mur1 LINE L1 5479 5722 -164 1 906 6766 117 82 1 chr12 42118164 42119243 -79138287 + Lx2B LINE L1 5834 6999 -1 1 906 1069 225 29 8 chr12 42119243 42119258 -79138272 + L1_Mur1 LINE L1 5715 5729 -151 1 906 3545 196 35 103 chr12 42119264 42120151 -79137379 - RLTR25A LTR ERVK -276 827 1 1 906 883 169 6 6 chr12 42121910 42122088 -79135442 + CT-rich Low_complexity Low_complexity 3 180 0 1 906 1032 88 0 33 chr12 42122090 42122243 -79135287 - B1_Mus1 SINE Alu 0 148 1 1 906 285 29 0 0 chr12 42122291 42122325 -79135205 + (T)n Simple_repeat Simple_repeat 1 34 0 1 906 289 171 66 0 chr12 42122528 42122604 -79134926 + Lx9 LINE L1 7564 7644 0 1 906 198 0 0 0 chr12 42123093 42123115 -79134415 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 906 1134 77 0 0 chr12 42123115 42123258 -79134272 - B1_Mm SINE Alu -4 143 1 1 906 4195 106 45 17 chr12 42124422 42125065 -79132465 - Lx LINE L1 -1 6653 5993 1 906 284 295 40 54 chr12 42125079 42125153 -79132377 - L1_Rod LINE L1 -2436 3411 3340 1 906 3030 47 28 8 chr12 42125153 42125541 -79131989 - MTA_Mm LTR MaLR 0 396 1 1 906 284 295 40 54 chr12 42125541 42125688 -79131842 - L1_Rod LINE L1 -2508 3339 3193 1 906 238 0 53 26 chr12 42125965 42126003 -79131527 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 906 287 274 86 85 chr12 42126676 42126879 -79130651 - L1M4 LINE L1 -2545 3595 3398 1 906 2873 46 0 0 chr12 42126898 42127244 -79130286 - ORR1A1 LTR MaLR 0 346 1 1 906 414 322 25 0 chr12 42127385 42127506 -79130024 - B1F SINE Alu -17 132 9 1 906 27 0 0 0 chr12 42127512 42127539 -79129991 + AT_rich Low_complexity Low_complexity 1 27 0 1 906 24 32 0 0 chr12 42127562 42127593 -79129937 + AT_rich Low_complexity Low_complexity 1 31 0 1 906 330 26 0 0 chr12 42128664 42128703 -79128827 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 906 181 299 42 56 chr12 42128906 42128977 -79128553 - L3b LINE CR1 -64 418 349 1 906 180 0 0 0 chr12 42128990 42129010 -79128520 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 906 194 348 101 0 chr12 42129866 42129955 -79127575 - MIR SINE MIR -114 148 51 1 906 983 280 112 0 chr12 42131164 42131521 -79126009 + Lx8 LINE L1 7075 7471 -2 1 906 273 357 20 39 chr12 42133134 42133236 -79124294 + B1F SINE Alu 1 100 -49 1 906 1885 159 48 87 chr12 42133245 42133638 -79123892 + ORR1C1 LTR MaLR 1 378 0 1 906 3349 252 38 28 chr12 42133638 42134535 -79122995 + ORR1C1-int LTR MaLR 1 906 -464 1 906 210 167 0 0 chr12 42135068 42135104 -79122426 + T-rich Low_complexity Low_complexity 1 36 0 1 906 1012 277 91 32 chr12 42135391 42135800 -79121730 + MLT1C LTR MaLR 3 467 0 1 906 183 80 0 0 chr12 42136422 42136447 -79121083 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 906 509 289 9 0 chr12 42136717 42136831 -79120699 + PB1D7 SINE Alu 1 115 -5 1 906 374 152 11 0 chr12 42137625 42137717 -79119813 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 1 906 232 248 53 101 chr12 42138649 42138780 -79118750 + MIRb SINE MIR 79 201 -67 1 906 333 0 0 0 chr12 42139127 42139164 -79118366 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 1 906 369 0 0 0 chr12 42140128 42140169 -79117361 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 906 556 50 25 0 chr12 42140206 42140286 -79117244 + (TCCCC)n Simple_repeat Simple_repeat 4 85 0 1 906 594 0 0 0 chr12 42140289 42140355 -79117175 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 906 670 180 69 23 chr12 42140359 42140490 -79117040 - B1_Mur3 SINE Alu -11 138 2 1 906 6339 33 0 0 chr12 42140723 42141473 -79116057 - L1Md_T LINE L1 -1 6581 5832 1 906 965 70 0 0 chr12 42141473 42141601 -79115929 - B1_Mus1 SINE Alu -20 128 1 1 906 403 283 18 36 chr12 42141743 42141908 -79115622 - Lx9 LINE L1 -301 7343 7182 1 906 35 24 0 0 chr12 42142192 42142234 -79115296 + AT_rich Low_complexity Low_complexity 1 42 0 1 906 22 0 0 0 chr12 42142295 42142317 -79115213 + AT_rich Low_complexity Low_complexity 1 22 0 1 906 275 238 31 16 chr12 42142378 42142442 -79115088 - ID4_ SINE ID -16 67 3 1 906 263 122 20 0 chr12 42143421 42143470 -79114060 + (TCTCCC)n Simple_repeat Simple_repeat 5 54 0 1 906 653 273 76 33 chr12 42143676 42143977 -79113553 - ORR1E LTR MaLR -1 358 2 1 906 21 0 0 0 chr12 42145752 42145773 -79111757 + AT_rich Low_complexity Low_complexity 1 21 0 1 906 23 0 0 0 chr12 42146174 42146197 -79111333 + AT_rich Low_complexity Low_complexity 1 23 0 1 906 21 0 0 0 chr12 42146261 42146282 -79111248 + AT_rich Low_complexity Low_complexity 1 21 0 1 906 228 358 12 0 chr12 42147068 42147149 -79110381 - MIRm SINE MIR -123 153 72 1 906 498 317 66 16 chr12 42147664 42147847 -79109683 + B3A SINE B2 1 192 -6 1 906 499 304 27 40 chr12 42148732 42148955 -79108575 + ID_B1 SINE B4 2 221 -3 1 906 5002 48 13 8 chr12 42149134 42149768 -79107762 + L1Md_F2 LINE L1 5946 6582 0 1 906 238 289 96 7 chr12 42149996 42150132 -79107398 + L1ME3 LINE L1 5813 5960 -202 1 906 603 153 0 22 chr12 42150500 42150634 -79106896 + GA-rich Low_complexity Low_complexity 3 133 0 1 906 1165 70 0 0 chr12 42151270 42151412 -79106118 + B1_Mus2 SINE Alu 1 142 -5 1 906 857 332 82 65 chr12 42153131 42153643 -79103887 + MER44B DNA MER2_type 30 550 0 1 906 228 297 0 0 chr12 42153795 42153869 -79103661 - L1MC5 LINE L1 -532 7429 7356 1 906 253 82 41 0 chr12 42155343 42155392 -79102138 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 906 22 0 0 0 chr12 42155406 42155428 -79102102 + AT_rich Low_complexity Low_complexity 1 22 0 1 906 275 227 295 6 chr12 42155586 42155759 -79101771 - Kanga2_a DNA Tc2 -337 551 329 1 906 349 309 115 21 chr12 42155780 42155972 -79101558 + MIR SINE MIR 7 216 -46 1 906 326 321 67 28 chr12 42156251 42156536 -79100994 - L1MB4 LINE L1 -61 6119 5824 1 906 200 323 53 21 chr12 42158038 42158133 -79099397 + L2b LINE L2 2281 2378 -1041 1 906 194 358 17 76 chr12 42158113 42158231 -79099299 + L2b LINE L2 3172 3282 -93 1 906 392 255 162 7 chr12 42158505 42158632 -79098898 + RSINE1 SINE B4 1 149 -16 1 906 297 0 0 0 chr12 42158632 42158665 -79098865 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 906 392 255 162 7 chr12 42158665 42158679 -79098851 + RSINE1 SINE B4 150 163 -2 1 906 330 252 0 10 chr12 42160308 42160408 -79097122 + (TA)n Simple_repeat Simple_repeat 2 100 0 1 906 444 37 0 0 chr12 42160433 42160487 -79097043 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 906 603 102 0 0 chr12 42160877 42160965 -79096565 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 906 474 349 0 0 chr12 42160980 42161112 -79096418 - RSINE1 SINE B4 -31 134 3 1 906 180 0 0 0 chr12 42162924 42162944 -79094586 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 906 180 0 0 0 chr12 42164162 42164182 -79093348 + (T)n Simple_repeat Simple_repeat 1 20 0 1 906 637 150 17 17 chr12 42164286 42164416 -79093114 - B1_Mur4 SINE Alu -1 149 19 1 906 389 352 106 5 chr12 42166250 42166467 -79091063 + MER44A DNA MER2_type 5 243 -96 1 906 394 390 65 14 chr12 42166465 42166681 -79090849 + MER44D DNA MER2_type 5 231 -474 1 906 234 279 173 0 chr12 42166717 42166821 -79090709 + MER44D DNA MER2_type 358 479 -226 1 906 195 129 0 0 chr12 42166890 42166921 -79090609 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 1 906 427 311 0 0 chr12 42166930 42167036 -79090494 + RLTR14 LTR ERV1 274 379 -3 1 906 262 164 66 0 chr12 42167434 42167495 -79090035 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 906 26 30 0 0 chr12 42168095 42168128 -79089402 + AT_rich Low_complexity Low_complexity 1 33 0 1 906 222 37 0 0 chr12 42169206 42169233 -79088297 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 2 906 180 111 0 0 chr12 42169385 42169412 -79088118 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 906 389 329 71 9 chr12 42169435 42169775 -79087755 - L1MA4 LINE L1 -406 5894 5534 2 906 442 321 15 0 chr12 42169964 42170101 -79087429 - B1_Mur1 SINE Alu -9 140 2 2 906 22 35 0 0 chr12 42170102 42170131 -79087399 + AT_rich Low_complexity Low_complexity 1 29 0 2 906 239 314 40 0 chr12 42170374 42170464 -79087066 + B1F2 SINE Alu 6 100 -47 2 906 233 201 39 0 chr12 42173187 42173240 -79084290 - ID4 SINE ID -18 65 6 2 906 414 0 0 0 chr12 42175059 42175105 -79082425 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 906 261 0 0 0 chr12 42175399 42175428 -79082102 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 906 249 349 0 0 chr12 42177535 42177601 -79079929 + ID_B1 SINE B4 136 201 -23 2 906 22 0 0 0 chr12 42177669 42177691 -79079839 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 22 0 0 0 chr12 42177824 42177846 -79079684 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 23 33 0 0 chr12 42178049 42178079 -79079451 + AT_rich Low_complexity Low_complexity 1 30 0 2 906 35 54 0 0 chr12 42178087 42178143 -79079387 + AT_rich Low_complexity Low_complexity 1 56 0 2 906 740 221 166 0 chr12 42182872 42183053 -79074477 - URR1A DNA MER1_type -15 211 1 2 906 1902 73 0 0 chr12 42185803 42186050 -79071480 - L1Md_F2 LINE L1 -471 6111 5865 2 906 3519 52 0 14 chr12 42186047 42186492 -79071038 + L1Md_F2 LINE L1 6120 6558 -24 2 906 474 18 0 0 chr12 42186492 42186547 -79070983 + (TAA)n Simple_repeat Simple_repeat 3 57 0 2 906 22 0 0 0 chr12 42188241 42188263 -79069267 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 1165 76 0 0 chr12 42188418 42188563 -79068967 + B1_Mus2 SINE Alu 1 145 -2 2 906 261 0 0 0 chr12 42188563 42188592 -79068938 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 906 213 65 0 0 chr12 42188592 42188622 -79068908 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 906 310 102 43 14 chr12 42190480 42190550 -79066980 - L1_Mus3 LINE L1 -8 6630 6559 2 906 216 154 0 0 chr12 42190550 42190602 -79066928 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 906 441 0 0 0 chr12 42190602 42190651 -79066879 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 906 237 268 0 0 chr12 42191087 42191158 -79066372 + CT-rich Low_complexity Low_complexity 2 72 0 2 906 434 203 8 0 chr12 42191158 42191276 -79066254 + (CA)n Simple_repeat Simple_repeat 1 119 0 2 906 425 229 37 0 chr12 42191356 42191465 -79066065 + Lx9 LINE L1 7314 7426 -218 2 906 227 308 0 97 chr12 42192123 42192195 -79065335 - ID4_ SINE ID 0 83 19 2 906 719 222 13 13 chr12 42192834 42192989 -79064541 + RSINE1 SINE B4 3 157 -8 2 906 455 125 0 24 chr12 42192990 42193072 -79064458 + (TATG)n Simple_repeat Simple_repeat 4 83 0 2 906 6243 65 1 10 chr12 42194008 42194821 -79062709 + L1_Mus2 LINE L1 5761 6566 0 2 906 210 143 0 0 chr12 42194835 42194870 -79062660 + (TTC)n Simple_repeat Simple_repeat 2 36 0 2 906 531 315 7 20 chr12 42195016 42195165 -79062365 - RSINE1 SINE B4 -17 148 2 2 906 186 167 0 0 chr12 42195227 42195263 -79062267 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 2 906 225 270 29 128 chr12 42196786 42196888 -79060642 + LTR81C LTR ERV1? 188 279 -874 2 906 212 300 148 10 chr12 42197606 42197707 -79059823 + PB1D10 SINE Alu 2 116 -1 2 906 378 0 0 0 chr12 42199005 42199047 -79058483 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 906 1171 49 0 0 chr12 42202182 42202319 -79055211 + B1_Mus2 SINE Alu 1 137 -10 2 906 314 23 23 0 chr12 42202319 42202362 -79055168 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 906 255 294 21 52 chr12 42203692 42203789 -79053741 + RSINE1 SINE B4 68 161 -4 2 906 270 272 146 12 chr12 42204019 42204101 -79053429 - RSINE1 SINE B4 -53 112 20 2 907 285 29 0 0 chr12 42206721 42206755 -79050775 + (TGG)n Simple_repeat Simple_repeat 1 34 0 2 907 287 268 0 40 chr12 42207317 42207391 -79050139 + Lx8 LINE L1 7227 7297 -176 2 907 189 94 0 0 chr12 42207905 42207937 -79049593 + (A)n Simple_repeat Simple_repeat 1 32 0 2 907 462 253 36 6 chr12 42211719 42211886 -79045644 + CT-rich Low_complexity Low_complexity 1 172 0 2 907 180 111 0 0 chr12 42212331 42212358 -79045172 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 907 582 103 0 0 chr12 42213070 42213157 -79044373 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 907 230 277 68 92 chr12 42213307 42213470 -79044060 + RMER12 LTR ERVK 666 824 -498 2 907 25 0 0 0 chr12 42214151 42214176 -79043354 + AT_rich Low_complexity Low_complexity 1 25 0 2 907 584 124 112 10 chr12 42214661 42214759 -79042771 + B3 SINE B2 1 108 -108 2 907 31 26 0 0 chr12 42214759 42214797 -79042733 + AT_rich Low_complexity Low_complexity 1 38 0 2 907 882 200 178 0 chr12 42215350 42215535 -79041995 + URR1A DNA MER1_type 8 225 -1 2 907 200 282 0 40 chr12 42215667 42215741 -79041789 + CT-rich Low_complexity Low_complexity 1 71 0 2 907 184 338 14 0 chr12 42216217 42216288 -79041242 + MIR SINE MIR 152 223 -39 2 907 398 343 66 0 chr12 42216762 42216928 -79040602 - MIRb SINE MIR -76 192 16 2 907 300 239 257 42 chr12 42217429 42217573 -79039957 + RLTR40 LTR ERVK 510 684 -133 2 907 27 92 0 0 chr12 42218193 42218269 -79039261 + AT_rich Low_complexity Low_complexity 1 76 0 2 907 775 327 14 74 chr12 42218450 42218747 -79038783 + B4 SINE B4 12 290 -2 2 907 371 285 84 58 chr12 42219043 42219233 -79038297 - B3 SINE B2 0 195 1 2 907 802 176 7 0 chr12 42219345 42219481 -79038049 + B1_Mus1 SINE Alu 1 137 -11 2 907 21 0 0 0 chr12 42220087 42220108 -79037422 + AT_rich Low_complexity Low_complexity 1 21 0 2 907 201 136 45 0 chr12 42223009 42223053 -79034477 + T-rich Low_complexity Low_complexity 2 47 0 2 907 309 100 0 0 chr12 42223267 42223317 -79034213 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 907 539 292 94 72 chr12 42223943 42224220 -79033310 - B4A SINE B4 -7 285 3 2 907 225 0 0 0 chr12 42225055 42225080 -79032450 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 907 321 247 34 15 chr12 42226130 42226224 -79031306 + PB1D10 SINE Alu 8 105 -44 2 907 198 0 0 0 chr12 42226353 42226375 -79031155 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 907 458 336 0 8 chr12 42226392 42226524 -79031006 - RSINE1 SINE B4 -32 133 3 2 907 1268 256 131 0 chr12 42226605 42226964 -79030566 + MTD LTR MaLR 11 416 -3 2 907 3316 86 4 11 chr12 42227572 42228041 -79029489 - L1_Mus3 LINE L1 0 6638 6173 2 907 563 182 0 0 chr12 42228041 42228140 -79029390 + B1_Mm SINE Alu 49 147 0 2 907 393 321 43 36 chr12 42228488 42228627 -79028903 - B3 SINE B2 -75 141 2 2 907 375 346 19 12 chr12 42228796 42228957 -79028573 - RSINE1 SINE B4 0 165 4 2 907 702 11 11 0 chr12 42229137 42229229 -79028301 + L1Md_T LINE L1 26 118 -6404 2 907 4445 0 0 0 chr12 42229219 42229745 -79027785 + L1Md_Gf LINE L1 617 1142 -5380 2 907 33778 42 0 0 chr12 42229711 42234095 -79023435 + L1Md_T LINE L1 1206 5589 -297 2 907 9015 6 0 0 chr12 42234095 42235091 -79022439 + L1Md_T LINE L1 5590 6585 0 2 907 351 0 0 0 chr12 42235137 42235176 -79022354 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 907 303 333 29 0 chr12 42236115 42236217 -79021313 - MER5A1 DNA MER1_type -54 112 8 2 907 223 207 143 25 chr12 42236655 42236774 -79020756 - L2 LINE L2 -1208 2211 2079 2 907 235 313 156 7 chr12 42237760 42237895 -79019635 + MIR3 SINE MIR 54 208 0 2 907 324 0 0 0 chr12 42238029 42238065 -79019465 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 907 21 36 0 0 chr12 42238848 42238876 -79018654 + AT_rich Low_complexity Low_complexity 1 28 0 2 907 406 287 131 0 chr12 42239097 42239219 -79018311 - RSINE1 SINE B4 -17 148 11 2 907 865 296 58 25 chr12 42239869 42240350 -79017180 - L1MB5 LINE L1 -50 6124 5628 2 907 247 175 105 0 chr12 42240378 42240435 -79017095 - MTEb LTR MaLR -18 361 299 2 907 966 196 86 36 chr12 42240786 42241088 -79016442 - L1MB5 LINE L1 -568 5616 5300 2 907 2052 150 7 60 chr12 42241585 42241700 -79015830 - Lx4A LINE L1 -3 7055 6939 2 907 720 0 0 0 chr12 42241700 42241780 -79015750 + (CCCTAA)n Simple_repeat Simple_repeat 3 82 0 2 907 2052 150 7 60 chr12 42241780 42242067 -79015463 - Lx4A LINE L1 -120 6938 6675 2 907 508 263 0 93 chr12 42242788 42242939 -79014591 + B1F SINE Alu 6 142 -7 2 907 646 279 8 0 chr12 42243738 42243921 -79013609 - B3 SINE B2 -10 188 1 2 907 580 204 18 0 chr12 42244008 42244121 -79013409 - B1_Mur3 SINE Alu -10 139 25 2 907 624 321 69 22 chr12 42244141 42244418 -79013112 + B4A SINE B4 3 292 0 2 907 267 232 25 13 chr12 42244847 42245004 -79012526 + (CA)n Simple_repeat Simple_repeat 1 159 0 2 907 915 130 0 0 chr12 42246340 42246486 -79011044 + (TTTC)n Simple_repeat Simple_repeat 4 149 0 2 907 197 329 27 14 chr12 42246525 42246599 -79010931 - MIRc SINE MIR -137 131 57 2 907 205 273 0 0 chr12 42247188 42247232 -79010298 + polypyrimidine Low_complexity Low_complexity 2 45 0 2 907 522 146 0 0 chr12 42247489 42247585 -79009945 + (TA)n Simple_repeat Simple_repeat 1 96 0 2 907 182 306 70 31 chr12 42247588 42247716 -79009814 - L2c LINE L2 -5 3382 3250 2 907 251 125 42 0 chr12 42249118 42249166 -79008364 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 2 907 507 289 22 0 chr12 42250578 42250713 -79006817 - B1_Mur1 SINE Alu -7 142 5 2 907 231 167 0 0 chr12 42251081 42251147 -79006383 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 2 907 217 224 0 0 chr12 42254140 42254189 -79003341 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 907 468 48 0 0 chr12 42254339 42254402 -79003128 + (GA)n Simple_repeat Simple_repeat 1 63 0 3 907 852 230 54 27 chr12 42254504 42254727 -79002803 + B4A SINE B4 2 230 -62 3 907 761 212 0 0 chr12 42254731 42254877 -79002653 + B1_Mus1 SINE Alu 3 148 0 3 907 345 308 39 0 chr12 42254931 42255061 -79002469 - Lx7 LINE L1 -770 6926 6792 3 907 689 245 65 33 chr12 42255188 42255303 -79002227 + Lx8 LINE L1 7136 7263 -210 3 907 501 47 0 0 chr12 42255303 42255367 -79002163 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 907 689 245 65 33 chr12 42255367 42255466 -79002064 + Lx8 LINE L1 7264 7356 -117 3 907 1119 97 0 0 chr12 42255632 42256130 -79001400 + (TC)n Simple_repeat Simple_repeat 1 498 0 3 907 1863 248 29 16 chr12 42256192 42256695 -79000835 - RLTR16 LTR ERVK -33 472 3 3 907 34 42 0 0 chr12 42256710 42256758 -79000772 + AT_rich Low_complexity Low_complexity 1 48 0 3 907 366 23 0 0 chr12 42256826 42256869 -79000661 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 907 21 0 0 0 chr12 42257391 42257412 -79000118 + AT_rich Low_complexity Low_complexity 1 21 0 3 907 3501 161 49 39 chr12 42257476 42257823 -78999707 - RMER6D LTR ERVK 0 720 370 3 907 378 0 0 0 chr12 42257823 42257865 -78999665 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 907 207 0 0 0 chr12 42257865 42257887 -78999643 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 907 3501 161 49 39 chr12 42257887 42258251 -78999279 - RMER6D LTR ERVK -351 369 2 3 907 192 254 95 0 chr12 42259428 42259491 -78998039 + MER5B DNA MER1_type 24 92 -86 3 907 243 269 15 15 chr12 42260060 42260128 -78997402 - L2c LINE L2 -37 3350 3283 3 907 323 314 41 8 chr12 42261037 42261159 -78996371 - Arthur1C DNA Tip100 -104 259 134 3 907 373 398 97 19 chr12 42261711 42261980 -78995550 - MLT2B3 LTR ERVL -46 508 219 3 907 355 345 95 54 chr12 42261996 42262238 -78995292 - MLT2B3 LTR ERVL -263 257 6 3 907 229 45 43 43 chr12 42262263 42262310 -78995220 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 3 907 210 139 0 0 chr12 42263979 42264015 -78993515 + (CCTG)n Simple_repeat Simple_repeat 2 37 0 3 907 222 320 30 20 chr12 42264015 42264114 -78993416 - BC1_Mm scRNA scRNA -45 107 8 3 907 1386 242 140 30 chr12 42264987 42265358 -78992172 - MTD LTR MaLR -2 417 6 3 907 411 314 86 70 chr12 42265368 42265625 -78991905 - MER2 DNA MER2_type -22 323 63 3 907 207 0 0 0 chr12 42265669 42265692 -78991838 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 907 282 29 0 0 chr12 42265736 42265771 -78991759 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 907 183 204 18 53 chr12 42266081 42266138 -78991392 - L2a LINE L2 0 3426 3372 3 907 1084 89 7 0 chr12 42266226 42266372 -78991158 - B1_Mm SINE Alu 0 147 1 3 907 312 27 0 0 chr12 42266375 42266412 -78991118 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 907 328 297 83 48 chr12 42266413 42266558 -78990972 - MIR SINE MIR -111 151 2 3 907 183 67 0 82 chr12 42267759 42267808 -78989722 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 907 7000 31 0 0 chr12 42268920 42269736 -78987794 - L1Md_T LINE L1 -1 6581 5766 3 907 25 0 0 0 chr12 42269875 42269900 -78987630 + AT_rich Low_complexity Low_complexity 1 25 0 3 907 2378 165 85 9 chr12 42270061 42270588 -78986942 + Lx9 LINE L1 7077 7643 -1 3 907 213 65 0 0 chr12 42271476 42271507 -78986023 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 907 451 288 105 46 chr12 42273065 42273218 -78984312 - RSINE1 SINE B4 0 165 4 3 907 320 282 59 8 chr12 42273663 42273781 -78983749 - MIR SINE MIR -29 233 110 3 907 21 0 0 0 chr12 42274156 42274177 -78983353 + AT_rich Low_complexity Low_complexity 1 21 0 3 907 21 0 0 0 chr12 42274579 42274600 -78982930 + AT_rich Low_complexity Low_complexity 1 21 0 3 907 933 276 5 18 chr12 42275980 42276198 -78981332 - 7SLRNA srpRNA srpRNA -99 215 1 3 907 272 324 153 11 chr12 42276224 42276635 -78980895 - L1MC LINE L1 -315 5864 5406 3 907 277 283 45 15 chr12 42276657 42277039 -78980491 - L1MC LINE L1 -779 5367 4974 3 907 30 27 0 0 chr12 42277122 42277159 -78980371 + AT_rich Low_complexity Low_complexity 1 37 0 3 907 833 290 124 10 chr12 42277254 42277745 -78979785 - Lx9 LINE L1 -43 7601 7055 3 907 462 206 0 0 chr12 42278148 42278204 -78979326 + polypurine Low_complexity Low_complexity 2 57 0 3 907 300 27 0 0 chr12 42278204 42278241 -78979289 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 907 462 206 0 0 chr12 42278241 42278315 -78979215 + polypurine Low_complexity Low_complexity 58 131 0 3 907 256 304 63 0 chr12 42278968 42279047 -78978483 + BC1_Mm scRNA scRNA 5 88 -64 3 907 835 299 135 36 chr12 42279482 42280130 -78977400 - L1MC2 LINE L1 -182 6162 5456 3 907 366 23 0 0 chr12 42280130 42280173 -78977357 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 907 835 278 126 22 chr12 42280173 42280554 -78976976 - L1MC2 LINE L1 -889 5455 5024 3 907 2215 204 9 24 chr12 42280554 42280976 -78976554 - MTC LTR MaLR 0 421 6 3 907 32 0 0 0 chr12 42281032 42281064 -78976466 + AT_rich Low_complexity Low_complexity 1 32 0 3 907 347 311 143 25 chr12 42281104 42281496 -78976034 - L1MC3 LINE L1 -492 7293 6856 3 907 324 333 250 20 chr12 42281505 42281865 -78975665 - L1MC3 LINE L1 -906 6879 6438 3 907 492 131 13 65 chr12 42281882 42282037 -78975493 + (TG)n Simple_repeat Simple_repeat 1 147 0 3 907 420 259 140 20 chr12 42284100 42284250 -78973280 + B4A SINE B4 3 170 -122 3 907 261 298 9 37 chr12 42284845 42284953 -78972577 + CT-rich Low_complexity Low_complexity 1 105 0 3 907 438 53 0 0 chr12 42285427 42285484 -78972046 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 907 963 134 22 6 chr12 42285586 42285766 -78971764 + RMER10B LTR ERVL 5 187 -211 3 907 324 0 0 0 chr12 42286194 42286230 -78971300 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 907 465 308 60 0 chr12 42286624 42286757 -78970773 + RSINE1 SINE B4 12 152 -13 3 907 470 277 0 13 chr12 42287123 42287280 -78970250 - RCHARR1 DNA MER1_type -84 890 736 3 907 950 234 162 25 chr12 42287393 42287756 -78969774 - RCHARR1 DNA MER1_type -453 521 109 3 907 275 357 116 24 chr12 42288307 42288600 -78968930 - MLT1D LTR MaLR -149 356 37 3 907 695 274 85 0 chr12 42288837 42289038 -78968492 + B4A SINE B4 2 219 -73 3 907 469 242 79 24 chr12 42289019 42289146 -78968384 + B3 SINE B2 8 141 -75 3 907 300 180 0 0 chr12 42289209 42289259 -78968271 + B3 SINE B2 149 198 -18 3 907 411 38 0 0 chr12 42289259 42289312 -78968218 + (CATA)n Simple_repeat Simple_repeat 4 56 0 3 907 304 316 0 0 chr12 42289312 42289388 -78968142 + B4A SINE B4 217 292 0 3 907 21 36 0 0 chr12 42291233 42291261 -78966269 + AT_rich Low_complexity Low_complexity 1 28 0 3 907 180 152 0 0 chr12 42292004 42292037 -78965493 + CT-rich Low_complexity Low_complexity 2 34 0 3 907 215 340 132 28 chr12 42293080 42293186 -78964344 - L2b LINE L2 -5 3370 3254 3 907 304 327 97 0 chr12 42293635 42293748 -78963782 + Tigger5 DNA MER2_type 43 166 -2240 3 907 222 62 0 0 chr12 42293754 42293786 -78963744 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 910 309 26 0 0 chr12 42676564 42676602 -78580928 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 910 450 36 0 0 chr12 42676602 42676657 -78580873 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 910 223 88 0 0 chr12 42676764 42676798 -78580732 - B1_Mus2 SINE Alu -113 34 1 3 910 558 303 81 34 chr12 42676880 42677287 -78580243 - L1MB2 LINE L1 -15 6156 5731 4 910 23 33 0 0 chr12 42677428 42677458 -78580072 + AT_rich Low_complexity Low_complexity 1 30 0 5 910 407 230 30 51 chr12 42677476 42677641 -78579889 - L1MB2 LINE L1 -691 5477 5316 4 910 27 0 0 0 chr12 42677643 42677670 -78579860 + AT_rich Low_complexity Low_complexity 1 27 0 6 910 468 324 0 0 chr12 42677682 42677824 -78579706 - B1_Mur1 SINE Alu -7 142 1 7 910 180 0 0 0 chr12 42677842 42677862 -78579668 + (TTGTG)n Simple_repeat Simple_repeat 3 22 0 8 910 218 314 0 10 chr12 42677863 42677966 -78579564 + (TA)n Simple_repeat Simple_repeat 2 103 0 9 910 320 234 127 48 chr12 42677996 42678011 -78579519 - L1MB2 LINE L1 -880 5266 5254 4 910 1900 146 38 0 chr12 42678011 42678326 -78579204 + ORR1A2 LTR MaLR 1 327 0 1 910 320 234 127 48 chr12 42678326 42678476 -78579054 - L1MB2 LINE L1 -893 5253 5088 4 910 6664 41 1 2 chr12 42680705 42681517 -78576013 + L1Md_F2 LINE L1 5759 6569 -13 1 910 230 188 0 40 chr12 42681534 42681584 -78575946 + MTC LTR MaLR 68 115 -306 1 910 323 58 0 55 chr12 42681758 42681813 -78575717 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1 910 1130 166 208 47 chr12 42682388 42682710 -78574820 + ORR1D1 LTR MaLR 1 374 0 1 910 288 0 0 0 chr12 42685007 42685039 -78572491 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 910 513 68 0 0 chr12 42685039 42685112 -78572418 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 910 293 339 112 103 chr12 42685499 42686131 -78571399 - L2 LINE L2 -718 2701 2064 1 910 330 26 0 0 chr12 42686963 42687002 -78570528 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 910 180 0 0 0 chr12 42689588 42689608 -78567922 + (A)n Simple_repeat Simple_repeat 1 20 0 1 910 195 42 0 0 chr12 42690974 42690998 -78566532 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 2 910 209 176 0 0 chr12 42691577 42691611 -78565919 + CT-rich Low_complexity Low_complexity 1 34 0 2 910 642 204 63 156 chr12 42691623 42691714 -78565816 - B3 SINE B2 0 216 157 2 910 276 30 0 0 chr12 42691714 42691747 -78565783 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 910 642 204 63 156 chr12 42691747 42691893 -78565637 - B3 SINE B2 -60 156 1 2 910 189 0 0 0 chr12 42692289 42692310 -78565220 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2 910 189 0 0 0 chr12 42693385 42693406 -78564124 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2 910 1954 220 5 12 chr12 42693489 42693907 -78563623 + MTC LTR MaLR 3 417 -4 2 910 1593 275 95 4 chr12 42694868 42695546 -78561984 + L1MD2 LINE L1 5194 5934 -425 2 910 402 235 0 25 chr12 42695583 42695677 -78561853 - B1_Mur1 SINE Alu -3 146 56 2 910 1067 206 111 0 chr12 42695683 42695926 -78561604 + MTC LTR MaLR 100 369 -52 2 910 2602 72 0 3 chr12 42695982 42696343 -78561187 + BGLII LTR ERVK 62 421 0 3 910 21 57 0 0 chr12 42697501 42697536 -78559994 + AT_rich Low_complexity Low_complexity 1 35 0 3 910 2871 281 45 10 chr12 42698467 42699247 -78558283 - Lx7 LINE L1 -462 7234 6428 3 910 1436 234 37 69 chr12 42699275 42699633 -78557897 - L1_Mur3 LINE L1 -40 5840 5475 3 910 195 42 0 0 chr12 42699633 42699657 -78557873 + (CCCCCA)n Simple_repeat Simple_repeat 4 27 0 3 910 1436 234 37 69 chr12 42699657 42699761 -78557769 - L1_Mur3 LINE L1 -406 5474 5393 3 910 1084 102 0 13 chr12 42699778 42699927 -78557603 - B1_Mus2 SINE Alu 0 147 1 3 910 3065 267 62 7 chr12 42700007 42700883 -78556647 + RCHARR1 DNA MER1_type 51 974 0 3 910 236 286 0 0 chr12 42701607 42701656 -78555874 - MamRep4096 DNA hAT? -377 49 1 3 910 186 331 104 39 chr12 42702020 42702174 -78555356 - L2 LINE L2 -556 2863 2700 3 910 776 262 31 57 chr12 42702625 42702819 -78554711 - B3A SINE B2 -8 190 2 3 910 238 306 152 67 chr12 42702952 42703176 -78554354 + MLT1J1 LTR MaLR 24 266 -178 4 910 249 109 0 0 chr12 42703985 42704031 -78553499 + (T)n Simple_repeat Simple_repeat 1 46 0 4 910 42 86 0 0 chr12 42705695 42705800 -78551730 + AT_rich Low_complexity Low_complexity 1 105 0 4 910 355 68 34 0 chr12 42706115 42706174 -78551356 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 910 629 315 75 19 chr12 42706175 42706429 -78551101 - B4A SINE B4 -2 290 22 4 910 406 324 52 75 chr12 42706429 42706816 -78550714 - MLT1D LTR MaLR -3 502 125 4 910 233 29 0 29 chr12 42707131 42707166 -78550364 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 4 910 455 296 79 64 chr12 42707904 42708106 -78549424 + B4A SINE B4 5 209 -83 4 910 1212 89 0 0 chr12 42708109 42708289 -78549241 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 910 443 261 183 0 chr12 42708310 42708425 -78549105 + B1_Mur1 SINE Alu 1 136 -13 4 910 23 54 0 0 chr12 42708819 42708856 -78548674 + AT_rich Low_complexity Low_complexity 1 37 0 5 910 198 301 40 27 chr12 42709105 42709180 -78548350 - L3 LINE CR1 -3504 985 910 5 910 340 380 0 0 chr12 42709295 42709416 -78548114 - LFSINE_Vert SINE SINE -125 334 214 5 910 324 0 0 0 chr12 42710178 42710214 -78547316 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 910 928 111 0 132 chr12 42711158 42711355 -78546175 + Lx2 LINE L1 6827 6997 0 5 910 333 0 0 0 chr12 42712236 42712273 -78545257 + (T)n Simple_repeat Simple_repeat 1 37 0 5 910 184 261 78 107 chr12 42713620 42713723 -78543807 + MER5A DNA MER1_type 4 103 -86 5 910 324 287 32 0 chr12 42713952 42714046 -78543484 + L1MB4 LINE L1 5830 5926 -254 5 910 1168 169 102 11 chr12 42714147 42714422 -78543108 - Lx9 LINE L1 -8 7636 7337 5 910 525 235 8 0 chr12 42714437 42714556 -78542974 + Lx9 LINE L1 7160 7279 -365 5 910 181 140 23 23 chr12 42714659 42714703 -78542827 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 6 910 1071 44 0 21 chr12 42714905 42715045 -78542485 + B1_Mm SINE Alu 1 137 -10 6 910 273 29 0 0 chr12 42715045 42715079 -78542451 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 910 28 71 0 0 chr12 42718439 42718495 -78539035 + AT_rich Low_complexity Low_complexity 1 56 0 6 910 868 220 23 0 chr12 42718596 42718773 -78538757 + ORR1C2 LTR MaLR 1 181 -193 6 910 366 134 41 10 chr12 42718777 42718875 -78538655 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 6 910 899 176 91 25 chr12 42718876 42718888 -78538642 + ORR1C2 LTR MaLR 174 185 -199 6 910 486 103 0 0 chr12 42718888 42718966 -78538564 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 910 899 176 91 25 chr12 42718966 42719151 -78538379 + ORR1C2 LTR MaLR 186 384 0 6 910 260 0 57 0 chr12 42721478 42721513 -78536017 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 6 910 180 152 0 0 chr12 42721666 42721699 -78535831 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 910 270 95 0 0 chr12 42722864 42722906 -78534624 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 6 910 529 265 14 22 chr12 42722929 42723068 -78534462 - B1_Mur2 SINE Alu -7 142 5 7 910 21 36 0 0 chr12 42723649 42723677 -78533853 + AT_rich Low_complexity Low_complexity 1 28 0 7 910 1230 41 0 0 chr12 42724347 42724494 -78533036 + B1_Mm SINE Alu 1 147 0 7 910 667 196 142 39 chr12 42724663 42724759 -78532771 - L1_Mur3 LINE L1 -3392 2488 2394 7 910 1319 100 16 16 chr12 42724759 42724952 -78532578 - B2_Mm2 SINE B2 -1 194 2 7 910 667 196 142 39 chr12 42724952 42725088 -78532442 - L1_Mur3 LINE L1 -3487 2393 2232 7 910 3547 127 0 9 chr12 42725083 42725653 -78531877 - L1_Mur2 LINE L1 -1687 4190 3626 7 910 6835 143 29 3 chr12 42725648 42727120 -78530410 + Lx2 LINE L1 5382 6995 -5 7 910 5785 87 16 2 chr12 42727120 42727925 -78529605 + Lx LINE L1 5827 6642 -12 7 910 477 0 0 0 chr12 42727927 42727980 -78529550 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 910 225 148 45 76 chr12 42729397 42729463 -78528067 - B1_Mur1 SINE Alu 0 149 86 7 113 251 250 130 0 chr12 42729415 42729507 -78528023 - ID_B1 SINE B4 -15 209 106 8 911 193 380 19 29 chr12 42729667 42729770 -78527760 + L4 LINE RTE 1720 1821 -208 8 911 392 332 47 101 chr12 42730636 42730894 -78526636 + Charlie1b DNA MER1_type 41 284 -239 8 911 472 281 77 39 chr12 42730896 42731155 -78526375 + L1MB8 LINE L1 5904 6172 -6 8 911 35 24 0 0 chr12 42733072 42733114 -78524416 + AT_rich Low_complexity Low_complexity 1 42 0 8 911 1777 187 30 80 chr12 42733121 42733494 -78524036 - ORR1B1 LTR MaLR 0 394 41 8 911 1145 226 63 11 chr12 42733594 42733862 -78523668 - Lx6 LINE L1 0 7460 7179 8 911 363 282 45 0 chr12 42735404 42735514 -78522016 - MER94 DNA AcHobo -1 133 19 8 911 189 107 0 0 chr12 42736625 42736653 -78520877 + (TTTC)n Simple_repeat Simple_repeat 3 30 0 8 911 347 380 39 17 chr12 42737172 42737405 -78520125 + MIR SINE MIR 2 239 -23 8 911 661 63 0 53 chr12 42737656 42737806 -78519724 + (TG)n Simple_repeat Simple_repeat 1 142 0 9 911 21 0 0 0 chr12 42738081 42738102 -78519428 + AT_rich Low_complexity Low_complexity 1 21 0 9 911 2529 107 15 8 chr12 42738132 42738526 -78519004 - L1_Mus3 LINE L1 0 6638 6242 9 911 600 297 84 0 chr12 42740121 42740323 -78517207 - L1MB1 LINE L1 -115 6053 5835 9 911 1550 121 201 7 chr12 42740332 42740615 -78516915 + ORR1A1 LTR MaLR 1 338 -8 9 911 312 132 0 0 chr12 42740654 42740711 -78516819 - L1MB1 LINE L1 -386 5782 5726 9 911 491 271 29 79 chr12 42740720 42740771 -78516759 - B1_Mur1 SINE Alu -15 134 94 9 911 950 230 164 138 chr12 42740771 42741291 -78516239 + MT2A LTR ERVL 1 533 0 9 911 491 271 29 79 chr12 42741291 42741379 -78516151 - B1_Mur1 SINE Alu -56 93 2 9 911 293 268 12 0 chr12 42741467 42741557 -78515973 - L1MB1 LINE L1 -631 5611 5514 9 911 364 266 32 0 chr12 42741555 42741649 -78515881 + L1M3 LINE L1 4673 4769 -1371 9 911 357 284 70 49 chr12 42741773 42741958 -78515572 + L1M3 LINE L1 4768 4956 -1184 9 911 808 160 17 0 chr12 42742003 42742178 -78515352 + CT-rich Low_complexity Low_complexity 3 180 0 9 911 278 65 43 0 chr12 42742178 42742224 -78515306 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 9 911 1048 213 119 19 chr12 42742363 42742631 -78514899 - Lx5 LINE L1 -109 6949 6655 1 911 363 368 66 14 chr12 42742903 42743115 -78514415 - MER58A DNA MER1_type 0 224 2 1 911 25 0 0 0 chr12 42745017 42745042 -78512488 + AT_rich Low_complexity Low_complexity 1 25 0 1 911 322 284 49 49 chr12 42745310 42745432 -78512098 + MER5A DNA MER1_type 14 135 -54 1 911 243 0 0 0 chr12 42746447 42746474 -78511056 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 911 251 253 62 12 chr12 42746847 42746927 -78510603 - B4A SINE B4 -208 84 1 1 911 593 84 0 0 chr12 42746959 42747042 -78510488 + B1_Mur4 SINE Alu 68 150 0 1 911 406 260 103 37 chr12 42747299 42747421 -78510109 + B3A SINE B2 48 180 -18 1 911 234 0 0 0 chr12 42747421 42747447 -78510083 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 911 406 260 103 37 chr12 42747447 42747460 -78510070 + B3A SINE B2 181 192 -6 1 911 1657 283 79 102 chr12 42748566 42749202 -78508328 + RCHARR1 DNA MER1_type 33 628 -346 1 911 423 0 0 0 chr12 42749202 42749249 -78508281 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 911 1657 283 79 102 chr12 42749249 42749575 -78507955 + RCHARR1 DNA MER1_type 629 972 -2 1 911 663 264 98 0 chr12 42752665 42752828 -78504702 - B4 SINE B4 0 292 114 1 911 811 254 173 0 chr12 42752892 42753222 -78504308 - L1MA6 LINE L1 0 6300 5914 1 911 393 70 0 0 chr12 42753713 42753770 -78503760 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 1 911 458 371 7 0 chr12 42753787 42753930 -78503600 - RSINE1 SINE B4 -20 145 2 1 911 220 232 151 47 chr12 42754035 42754121 -78503409 + MER5B DNA MER1_type 84 178 0 1 911 1093 99 0 0 chr12 42756974 42757116 -78500414 - B1_Mus1 SINE Alu -5 143 2 1 911 875 297 35 31 chr12 42757679 42757905 -78499625 + B4 SINE B4 50 276 -16 1 911 354 45 0 0 chr12 42757908 42757952 -78499578 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 911 21 36 0 0 chr12 42758804 42758832 -78498698 + AT_rich Low_complexity Low_complexity 1 28 0 1 911 680 283 11 6 chr12 42759114 42759295 -78498235 + Lx8 LINE L1 6870 7051 -422 1 911 681 101 0 0 chr12 42761774 42761873 -78495657 + (TA)n Simple_repeat Simple_repeat 2 100 0 1 911 366 332 99 37 chr12 42762670 42762942 -78494588 - MLT1D LTR MaLR -216 289 1 1 911 225 354 145 41 chr12 42763311 42763724 -78493806 - L4 LINE RTE -313 1716 1261 1 911 277 273 0 15 chr12 42764876 42764943 -78492587 - ID4 SINE ID -1 82 17 1 911 207 0 0 0 chr12 42765027 42765050 -78492480 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 911 1121 65 0 0 chr12 42765050 42765188 -78492342 - B1_Mus1 SINE Alu -10 138 1 1 911 590 323 0 18 chr12 42765217 42765381 -78492149 - RSINE1 SINE B4 -2 163 3 1 911 741 191 147 16 chr12 42765514 42765705 -78491825 - RMER13A LTR ERVK -107 753 538 1 911 2120 122 0 16 chr12 42765722 42766038 -78491492 - RMER13A LTR ERVK -525 335 25 1 911 387 277 0 32 chr12 42767096 42767219 -78490311 - PB1D9 SINE Alu 0 120 2 1 911 23 0 0 0 chr12 42767313 42767336 -78490194 + AT_rich Low_complexity Low_complexity 1 23 0 1 911 2357 160 77 20 chr12 42767681 42768133 -78489397 - Lx5 LINE L1 -3 7047 6570 1 911 755 288 19 9 chr12 42768133 42768347 -78489183 - B3 SINE B2 0 216 1 1 911 943 226 40 14 chr12 42768387 42768608 -78488922 - MTC LTR MaLR -8 413 176 1 911 1284 170 0 9 chr12 42769081 42769301 -78488229 - MTC LTR MaLR -203 218 1 1 911 34 0 0 0 chr12 42771522 42771556 -78485974 + AT_rich Low_complexity Low_complexity 1 34 0 1 911 525 242 93 21 chr12 42771557 42771751 -78485779 + L1MC4a LINE L1 7663 7870 -12 1 911 485 81 0 26 chr12 42773377 42773453 -78484077 + (CATA)n Simple_repeat Simple_repeat 4 77 0 1 911 4532 106 70 27 chr12 42773487 42774263 -78483267 - RMER17D2 LTR ERVK 0 809 1 1 911 428 183 0 11 chr12 42774429 42774523 -78483007 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 911 2205 164 115 25 chr12 42774523 42775053 -78482477 - RMER6C LTR ERVK -8 682 105 1 911 343 52 0 33 chr12 42775148 42775208 -78482322 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 1 911 586 265 53 7 chr12 42775212 42775364 -78482166 - ID_B1 SINE B4 -1 223 65 1 911 794 150 35 35 chr12 42775375 42775520 -78482010 - B1_Mur4 SINE Alu 0 150 6 1 911 29 70 0 0 chr12 42776925 42776982 -78480548 + AT_rich Low_complexity Low_complexity 1 57 0 1 911 221 260 10 29 chr12 42777081 42777184 -78480346 + (CATATA)n Simple_repeat Simple_repeat 6 106 0 1 911 488 16 0 16 chr12 42777617 42777679 -78479851 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 911 228 325 8 81 chr12 42778555 42778679 -78478851 + PB1D10 SINE Alu 1 115 -2 1 911 21 0 0 0 chr12 42778748 42778769 -78478761 + AT_rich Low_complexity Low_complexity 1 21 0 1 911 655 333 47 54 chr12 42778773 42779049 -78478481 + B4A SINE B4 1 274 -18 1 911 441 95 0 0 chr12 42779053 42779116 -78478414 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 911 205 305 134 48 chr12 42779141 42779327 -78478203 + L2a LINE L2 3224 3425 -1 1 911 997 258 18 39 chr12 42780421 42780707 -78476823 - Lx6 LINE L1 -55 7405 7126 1 911 726 141 8 0 chr12 42780708 42780829 -78476701 - Lx5 LINE L1 -608 6442 6321 1 911 207 0 0 0 chr12 42780830 42780853 -78476677 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1 911 343 141 16 0 chr12 42780872 42780936 -78476594 - Lx5 LINE L1 -1301 5749 5685 1 911 1575 259 43 5 chr12 42780947 42781456 -78476074 - Lx6 LINE L1 -563 6897 6454 1 911 1519 264 70 0 chr12 42781467 42781868 -78475662 - Lx6 LINE L1 -1192 6268 5840 1 911 2340 207 32 114 chr12 42781864 42782287 -78475243 + L1_Mur2 LINE L1 4883 5285 -598 1 911 1163 79 12 12 chr12 42782287 42782453 -78475077 + B2_Mm2 SINE B2 5 170 -25 1 911 2340 207 32 114 chr12 42782453 42782938 -78474592 + L1_Mur2 LINE L1 5286 5749 -134 1 911 1447 155 29 0 chr12 42782961 42783206 -78474324 + Lx5 LINE L1 6317 6568 -482 1 911 715 211 142 9 chr12 42783207 42783418 -78474112 + Lx5 LINE L1 6811 7049 -1 1 911 994 315 117 23 chr12 42783721 42784287 -78473243 + Tigger13a DNA MER2_type 72 690 -81 1 911 970 258 54 52 chr12 42785813 42786201 -78471329 + L1M3 LINE L1 4847 5235 -905 1 911 381 95 0 0 chr12 42786210 42786273 -78471257 + (CTCA)n Simple_repeat Simple_repeat 4 66 0 1 911 326 152 152 0 chr12 42786322 42786388 -78471142 - MTE2b LTR MaLR -1 378 303 1 911 536 262 20 20 chr12 42786391 42786543 -78470987 - Lx7 LINE L1 -1383 6313 6162 1 911 401 307 60 0 chr12 42786544 42786710 -78470820 + Lx7 LINE L1 7137 7312 -384 1 911 1020 300 42 47 chr12 42786857 42787217 -78470313 - MTE2a LTR MaLR -21 358 1 1 911 309 336 78 35 chr12 42787610 42787841 -78469689 - L2a LINE L2 0 3426 3186 1 911 1638 158 47 173 chr12 42788365 42788856 -78468674 - RLTR23 LTR ERV1 -1 429 1 1 911 275 354 42 24 chr12 42789578 42789712 -78467818 + MER20 DNA MER1_type 35 173 -46 1 911 824 231 80 94 chr12 42789712 42790085 -78467445 - RLTR9A LTR ERVK 0 368 1 1 911 275 354 42 24 chr12 42790085 42790115 -78467415 + MER20 DNA MER1_type 174 202 -17 1 911 366 61 0 0 chr12 42791894 42791943 -78465587 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 911 502 313 31 70 chr12 42791943 42792170 -78465360 - B4A SINE B4 -74 218 1 1 911 1360 209 208 40 chr12 42792424 42792803 -78464727 + MT2A LTR ERVL 1 443 -90 1 911 378 61 0 0 chr12 42792810 42792859 -78464671 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 911 207 118 51 26 chr12 42792859 42792937 -78464593 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 911 378 42 0 0 chr12 42793817 42793865 -78463665 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 911 462 229 120 24 chr12 42793875 42794000 -78463530 - B3A SINE B2 -41 157 21 1 911 306 0 0 0 chr12 42794268 42794302 -78463228 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 911 245 29 29 0 chr12 42794309 42794343 -78463187 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 911 478 277 152 0 chr12 42796177 42796361 -78461169 - B3 SINE B2 -1 215 4 1 911 242 304 182 7 chr12 42796916 42797052 -78460478 + MIR3 SINE MIR 16 172 -36 1 911 1143 283 24 29 chr12 42797663 42798074 -78459456 - Lx5 LINE L1 -27 7433 7025 1 911 2837 247 71 15 chr12 42798079 42798583 -78458947 - Lx5 LINE L1 -731 6729 5964 1 911 2308 68 3 3 chr12 42798583 42798893 -78458637 - L1_Mus2 LINE L1 -1 6565 6256 1 911 2837 209 25 14 chr12 42798893 42799328 -78458202 - Lx5 LINE L1 -1087 5963 5518 1 911 603 253 14 128 chr12 42799694 42799912 -78457618 - MTD LTR MaLR 0 419 227 1 911 244 315 231 15 chr12 42801608 42801811 -78455719 - L2a LINE L2 -2 3424 3178 1 911 324 327 9 43 chr12 42802419 42802534 -78454996 - Tigger7 DNA MER2_type -9 2482 2372 1 911 246 318 45 40 chr12 42803356 42803556 -78453974 - L1M5 LINE L1 -336 5788 5588 1 911 1157 82 0 0 chr12 42803562 42803708 -78453822 + B1_Mus2 SINE Alu 2 147 0 1 911 213 154 0 0 chr12 42803724 42803763 -78453767 + GA-rich Low_complexity Low_complexity 2 40 0 1 911 1274 127 0 5 chr12 42803861 42804051 -78453479 + B2_Mm2 SINE B2 3 191 -4 1 911 258 231 30 15 chr12 42804238 42804304 -78453226 - B3 SINE B2 0 216 150 1 911 563 284 92 29 chr12 42804300 42804527 -78453003 + RLTR18 LTR ERVK 238 585 -31 1 911 435 19 0 0 chr12 42804899 42804951 -78452579 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 911 689 313 132 72 chr12 42805115 42805617 -78451913 - MER34 LTR ERV1 0 542 11 1 911 592 295 70 49 chr12 42806625 42806910 -78450620 + B4A SINE B4 2 292 0 1 911 382 307 0 0 chr12 42807796 42807897 -78449633 - PB1D10 SINE Alu -15 102 2 1 911 23 0 0 0 chr12 42808955 42808978 -78448552 + AT_rich Low_complexity Low_complexity 1 23 0 1 911 22 0 0 0 chr12 42809054 42809076 -78448454 + AT_rich Low_complexity Low_complexity 1 22 0 1 911 1113 68 7 0 chr12 42809162 42809308 -78448222 - B1_Mus2 SINE Alu 0 147 1 1 911 25 51 0 0 chr12 42809361 42809400 -78448130 + AT_rich Low_complexity Low_complexity 1 39 0 1 911 2219 107 83 14 chr12 42811092 42811452 -78446078 - Lx LINE L1 -5 6649 6265 1 911 26 50 0 0 chr12 42814006 42814046 -78443484 + AT_rich Low_complexity Low_complexity 1 40 0 1 911 600 14 0 0 chr12 42814078 42814147 -78443383 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 911 1828 130 36 0 chr12 42814349 42814625 -78442905 - Lx2B LINE L1 -139 6861 6576 2 911 1004 117 0 5 chr12 42814620 42814802 -78442728 - L1_Mur3 LINE L1 -1304 4576 4399 2 911 640 203 7 0 chr12 42814770 42814913 -78442617 - L1VL2 LINE L1 -5671 664 521 2 911 31 0 0 0 chr12 42815167 42815198 -78442332 + AT_rich Low_complexity Low_complexity 1 31 0 2 911 310 346 66 24 chr12 42815795 42815961 -78441569 + L1M5 LINE L1 4049 4221 -1925 2 911 601 66 0 0 chr12 42816526 42816602 -78440928 - L1_Mus2 LINE L1 -904 5662 5587 2 911 6528 75 57 8 chr12 42816557 42817477 -78440053 + L1_Mus2 LINE L1 5602 6566 0 2 911 2310 151 39 26 chr12 42817844 42818259 -78439271 - RLTR9B2 LTR ERVK 0 420 1 2 911 783 156 0 0 chr12 42818615 42818750 -78438780 + ORR1A3 LTR MaLR 2 136 -190 2 911 287 161 107 36 chr12 42818826 42818910 -78438620 - L1M5 LINE L1 -432 5732 5643 2 911 2522 64 61 0 chr12 42818928 42819254 -78438276 - ORR1A1 LTR MaLR 0 346 1 2 911 2178 78 16 10 chr12 42819254 42819565 -78437965 - ORR1A1-int LTR MaLR 0 1792 1480 2 911 2267 109 22 87 chr12 42819655 42820056 -78437474 + RLTR1B LTR ERV1 138 512 0 2 911 630 49 0 0 chr12 42820064 42820145 -78437385 - ORR1A1 LTR MaLR -128 218 138 2 911 1243 142 24 48 chr12 42820099 42820350 -78437180 + ORR1A2 LTR MaLR 83 327 0 2 911 26 50 0 0 chr12 42820778 42820818 -78436712 + AT_rich Low_complexity Low_complexity 1 40 0 2 911 3071 54 21 3 chr12 42820900 42821289 -78436241 - MTA_Mm LTR MaLR 0 396 1 2 911 204 132 14 42 chr12 42821343 42821414 -78436116 + T-rich Low_complexity Low_complexity 2 70 0 2 911 1149 55 14 0 chr12 42821417 42821562 -78435968 - B1_Mm SINE Alu 0 147 1 2 911 747 223 17 83 chr12 42821571 42821811 -78435719 - Lx6 LINE L1 -26 7434 7211 2 911 228 222 63 108 chr12 42821811 42821832 -78435698 + PB1D7 SINE Alu 14 87 -33 2 911 277 205 301 0 chr12 42821832 42821915 -78435615 + ID_B1 SINE B4 113 220 -4 2 911 26 82 0 0 chr12 42821937 42821998 -78435532 + AT_rich Low_complexity Low_complexity 1 61 0 2 911 180 0 0 0 chr12 42822662 42822682 -78434848 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 911 685 269 38 38 chr12 42823949 42824158 -78433372 + B3 SINE B2 2 210 -6 2 911 192 77 0 0 chr12 42824286 42824312 -78433218 + (T)n Simple_repeat Simple_repeat 1 26 0 2 911 956 262 53 76 chr12 42826197 42826590 -78430940 - ORR1C2 LTR MaLR 0 384 1 2 911 182 138 69 0 chr12 42826957 42827015 -78430515 + GA-rich Low_complexity Low_complexity 2 63 0 2 911 1028 242 103 48 chr12 42827177 42827319 -78430211 - Lx9 LINE L1 -10 7634 7457 2 911 321 26 0 0 chr12 42827319 42827357 -78430173 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 911 1028 242 103 48 chr12 42827357 42827631 -78429899 - Lx9 LINE L1 -188 7456 7195 2 911 207 0 0 0 chr12 42827971 42827994 -78429536 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 911 971 218 24 5 chr12 42829833 42830040 -78427490 - B3 SINE B2 -5 211 1 2 911 2958 63 34 8 chr12 42830279 42830665 -78426865 + MTA_Mm LTR MaLR 1 396 0 2 911 2265 326 39 6 chr12 42832534 42833360 -78424170 - Lx8 LINE L1 -182 7291 6439 2 911 288 0 0 0 chr12 42833373 42833405 -78424125 + (T)n Simple_repeat Simple_repeat 1 32 0 2 911 747 295 29 21 chr12 42833405 42833686 -78423844 - B4A SINE B4 -8 284 2 2 911 420 191 0 0 chr12 42833995 42834079 -78423451 + CT-rich Low_complexity Low_complexity 2 85 0 2 911 341 333 138 53 chr12 42835518 42835843 -78421687 + MLT1A0 LTR MaLR 1 355 -10 2 911 6758 106 33 17 chr12 42836246 42837288 -78420242 - Lx LINE L1 -1 6653 5596 2 911 18033 164 15 20 chr12 42837279 42837645 -78419885 - L1VL4 LINE L1 -1168 4718 4352 2 911 3448 20 5 0 chr12 42837645 42838039 -78419491 + MTA_Mm LTR MaLR 1 396 0 2 911 18033 164 15 20 chr12 42838039 42841053 -78416477 - L1VL4 LINE L1 -1535 4351 1359 2 911 4950 62 20 5 chr12 42841053 42841701 -78415829 - L1_Mus1 LINE L1 -2 6565 5908 2 911 18033 153 25 20 chr12 42841701 42842497 -78415033 - L1VL4 LINE L1 -4528 1358 559 2 911 4970 44 5 8 chr12 42842848 42843467 -78414063 - L1Md_F2 LINE L1 0 6582 5966 2 911 222 37 0 0 chr12 42844257 42844284 -78413246 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2 911 1441 298 48 22 chr12 42844612 42845290 -78412240 + Lx6 LINE L1 6454 7432 -28 2 911 396 103 0 0 chr12 42845410 42845468 -78412062 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 2 911 6376 6 0 0 chr12 42845798 42846508 -78411022 + L1Md_A LINE L1 5873 6582 0 2 911 2008 181 13 11 chr12 42846924 42847297 -78410233 + ORR1D1 LTR MaLR 1 374 0 2 911 207 69 0 0 chr12 42847524 42847553 -78409977 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 911 236 239 0 0 chr12 42847592 42847638 -78409892 + Lx9 LINE L1 7055 7100 -544 2 911 2266 261 74 42 chr12 42847716 42848235 -78409295 - Lx9 LINE L1 -217 7427 6883 2 911 4302 150 5 30 chr12 42848235 42849006 -78408524 - RMER6A LTR ERVK -4 752 1 2 911 2266 261 74 42 chr12 42849006 42849147 -78408383 - Lx9 LINE L1 -762 6882 6748 2 911 1371 158 148 40 chr12 42849147 42849444 -78408086 - ORR1A4 LTR MaLR 0 329 1 2 911 2266 261 74 42 chr12 42849444 42849529 -78408001 - Lx9 LINE L1 -897 6747 6657 2 911 305 283 57 24 chr12 42850269 42850392 -78407138 - LTR40b LTR ERVL -291 171 45 2 911 392 288 36 55 chr12 42850400 42850620 -78406910 + Lx8 LINE L1 7253 7468 -5 2 911 225 367 64 0 chr12 42851141 42851250 -78406280 - L3 LINE CR1 -1007 3482 3367 2 911 252 179 39 0 chr12 42851641 42851719 -78405811 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 911 270 0 0 0 chr12 42852329 42852359 -78405171 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 911 22 0 0 0 chr12 42852691 42852713 -78404817 + AT_rich Low_complexity Low_complexity 1 22 0 2 911 316 268 58 104 chr12 42852999 42853153 -78404377 - MLT1A LTR MaLR -218 156 10 2 911 887 140 41 0 chr12 42853235 42853518 -78404012 + GA-rich Low_complexity Low_complexity 1 294 0 2 911 195 129 0 0 chr12 42853519 42853550 -78403980 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2 911 21 0 0 0 chr12 42853938 42853959 -78403571 + AT_rich Low_complexity Low_complexity 1 21 0 2 911 701 311 22 0 chr12 42854837 42855020 -78402510 + B3A SINE B2 1 187 -11 2 911 1374 202 141 8 chr12 42855471 42855841 -78401689 - MTD LTR MaLR 0 419 1 2 911 266 345 68 8 chr12 42856435 42856552 -78400978 - L4 LINE RTE -123 1906 1783 2 911 280 416 8 16 chr12 42856863 42856990 -78400540 - MER5A DNA MER1_type -37 152 27 2 911 630 371 120 23 chr12 42857175 42857733 -78399797 - L4 LINE RTE -796 1233 622 2 911 186 43 0 0 chr12 42857953 42857976 -78399554 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 911 267 31 0 0 chr12 42857974 42858006 -78399524 + (T)n Simple_repeat Simple_repeat 1 32 0 2 911 267 31 0 0 chr12 42858956 42858988 -78398542 + (T)n Simple_repeat Simple_repeat 1 32 0 2 911 1415 223 129 27 chr12 42858993 42859366 -78398164 - MTD LTR MaLR -8 411 1 2 911 1342 246 97 3 chr12 42859521 42859863 -78397667 - MTD LTR MaLR 0 419 46 2 912 21 36 0 0 chr12 42860675 42860703 -78396827 + AT_rich Low_complexity Low_complexity 1 28 0 2 912 2469 210 62 6 chr12 42860703 42861202 -78396328 - Lx5 LINE L1 -3 7047 6521 2 912 715 160 178 41 chr12 42861203 42861372 -78396158 - Lx5 LINE L1 -644 6406 6215 2 912 815 205 103 12 chr12 42861692 42861944 -78395586 - Lx9 LINE L1 -2 7642 7368 2 912 22 0 0 0 chr12 42862125 42862147 -78395383 + AT_rich Low_complexity Low_complexity 1 22 0 2 912 1248 140 34 4 chr12 42862147 42862384 -78395146 - Lx4A LINE L1 0 7058 6815 2 912 411 21 0 0 chr12 42862394 42862442 -78395088 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 912 378 0 0 0 chr12 42862442 42862483 -78395047 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 912 586 296 0 0 chr12 42862763 42862895 -78394635 - RSINE1 SINE B4 -22 143 12 2 912 1173 135 17 0 chr12 42863219 42863397 -78394133 - B2_Mm2 SINE B2 -14 181 1 2 912 23 68 0 0 chr12 42863737 42863781 -78393749 + AT_rich Low_complexity Low_complexity 1 44 0 2 912 378 0 0 0 chr12 42863826 42863868 -78393662 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 912 288 53 0 0 chr12 42864274 42864312 -78393218 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 912 575 279 87 10 chr12 42864446 42864651 -78392879 - MLT1G1 LTR MaLR -85 494 274 2 912 236 283 0 40 chr12 42864651 42864727 -78392803 + LTR40b LTR ERVL 1 69 -450 2 912 250 167 27 96 chr12 42865042 42865115 -78392415 + LTR40b LTR ERVL 327 394 -68 2 912 540 0 0 0 chr12 42865321 42865381 -78392149 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 912 251 324 89 27 chr12 42865387 42865533 -78391997 - MLT1G1 LTR MaLR -368 227 73 2 912 460 369 63 74 chr12 42865660 42866011 -78391519 - LTR16E2 LTR ERVL -4 564 218 2 912 473 0 18 0 chr12 42866250 42866307 -78391223 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 912 22 0 0 0 chr12 42866747 42866769 -78390761 + AT_rich Low_complexity Low_complexity 1 22 0 2 912 24 53 0 0 chr12 42867110 42867148 -78390382 + AT_rich Low_complexity Low_complexity 1 38 0 2 912 8759 143 25 19 chr12 42867252 42869258 -78388272 - Lx2 LINE L1 0 6997 4995 2 912 2168 282 85 14 chr12 42869439 42870276 -78387254 - L1MC1 LINE L1 -44 6289 5394 2 912 873 237 27 5 chr12 42870283 42870470 -78387060 - MTC LTR MaLR -8 413 223 2 912 2795 205 29 16 chr12 42870459 42871038 -78386492 - MTC-int LTR MaLR -671 587 1 2 912 776 235 90 33 chr12 42871038 42871365 -78386165 - MTC LTR MaLR 0 419 10 2 912 1383 281 53 41 chr12 42871365 42872177 -78385353 - L1MC1 LINE L1 -758 5388 4567 2 912 760 318 72 46 chr12 42873255 42873601 -78383929 - MLT1A0 LTR MaLR -8 357 3 2 912 418 261 82 7 chr12 42874462 42874597 -78382933 + RSINE1 SINE B4 4 148 -17 2 912 714 305 14 24 chr12 42877197 42877405 -78380125 - B3 SINE B2 -3 213 8 2 912 221 375 41 10 chr12 42878222 42878319 -78379211 + L2c LINE L2 3270 3369 -18 2 912 465 320 62 6 chr12 42878321 42878500 -78379030 - LTR33 LTR ERVL 0 515 327 2 912 6043 11 9 1 chr12 42878771 42879572 -78377958 - L1Md_T LINE L1 0 6582 5883 2 912 7725 58 8 8 chr12 42879792 42880774 -78376756 - L1Md_F2 LINE L1 -9 6573 5592 2 912 1928 63 0 0 chr12 42880775 42881012 -78376518 + L1Md_F2 LINE L1 5385 5621 -262 2 912 282 239 15 0 chr12 42881048 42881115 -78376415 - tRNA-Ala-GCY_ tRNA tRNA -4 71 4 3 912 423 0 0 0 chr12 42881128 42881175 -78376355 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 912 593 216 24 16 chr12 42881353 42881480 -78376050 + B1F SINE Alu 15 142 -7 3 912 244 314 0 23 chr12 42881661 42881749 -78375781 + CT-rich Low_complexity Low_complexity 4 89 0 3 912 1959 245 39 7 chr12 42881832 42882770 -78374760 - Lx6 LINE L1 -26 7434 6184 3 912 200 100 25 0 chr12 42882777 42882817 -78374713 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 912 351 331 150 26 chr12 42882842 42883115 -78374415 - L1MC4a LINE L1 -2015 5867 5561 3 912 261 263 18 0 chr12 42884273 42884330 -78373200 + MER2 DNA MER2_type 278 335 -10 3 912 225 0 0 0 chr12 42885004 42885029 -78372501 + (A)n Simple_repeat Simple_repeat 1 25 0 3 912 236 133 32 32 chr12 42885611 42885704 -78371826 + T-rich Low_complexity Low_complexity 2 94 0 3 912 212 291 114 19 chr12 42885879 42885984 -78371546 + B3A SINE B2 66 180 -18 3 912 265 350 63 76 chr12 42885993 42886216 -78371314 + MLT1E2 LTR MaLR 17 236 -269 3 912 236 334 133 99 chr12 42886340 42886487 -78371043 + MLT1E2 LTR MaLR 273 420 -260 3 912 2325 86 132 99 chr12 42886487 42887001 -78370529 - RLTR47_MM LTR ERV1 -1 531 1 3 912 374 303 160 91 chr12 42887001 42887245 -78370285 + MLT1E2 LTR MaLR 365 676 -4 3 912 328 264 100 36 chr12 42887301 42887411 -78370119 - PB1D10 SINE Alu 0 117 1 3 912 905 266 5 0 chr12 42887519 42887733 -78369797 + B3 SINE B2 2 216 0 3 912 260 47 0 23 chr12 42888038 42888070 -78369460 + B1_Mur4 SINE Alu 108 139 -11 3 912 533 61 12 0 chr12 42888070 42888152 -78369378 + (CAA)n Simple_repeat Simple_repeat 2 84 0 3 912 260 47 0 23 chr12 42888152 42888163 -78369367 + B1_Mur4 SINE Alu 140 150 0 3 912 660 240 87 5 chr12 42888562 42888746 -78368784 + Lx7 LINE L1 7123 7321 -375 3 912 507 33 0 0 chr12 42888799 42888860 -78368670 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 912 17366 95 3 34 chr12 42889897 42891912 -78365618 - L1Md_F LINE L1 -403 5480 3533 3 912 3387 28 2 17 chr12 42891912 42892314 -78365216 - MTA_Mm LTR MaLR 0 396 1 3 912 17366 150 48 82 chr12 42892314 42894923 -78362607 - L1Md_F LINE L1 -2351 3532 725 3 912 388 256 60 36 chr12 42894893 42895059 -78362471 - L1Md_F LINE L1 -5772 844 675 3 912 352 303 31 54 chr12 42895090 42895414 -78362116 - L1VL1 LINE L1 -5941 477 45 3 912 575 373 57 18 chr12 42895611 42895892 -78361638 + B4A SINE B4 1 292 0 3 912 598 306 8 86 chr12 42896062 42896305 -78361225 + MER58A DNA MER1_type 1 224 0 3 912 273 368 49 76 chr12 42896670 42896958 -78360572 + L2c LINE L2 3105 3384 -3 3 912 513 326 21 21 chr12 42897188 42897379 -78360151 + Charlie1a DNA MER1_type 39 229 -1226 3 912 697 318 5 25 chr12 42897392 42897589 -78359941 - B3A SINE B2 -4 194 2 3 912 628 271 50 63 chr12 42897700 42897999 -78359531 + Charlie1a DNA MER1_type 283 577 -878 3 912 614 293 35 39 chr12 42898014 42898245 -78359285 + B4A SINE B4 22 251 -41 3 912 1495 222 55 6 chr12 42898363 42898729 -78358801 + ORR1C2 LTR MaLR 1 384 0 3 912 758 301 119 45 chr12 42898765 42899253 -78358277 + Charlie1a DNA MER1_type 571 1094 -361 3 912 398 266 62 27 chr12 42899256 42899368 -78358162 - RSINE1 SINE B4 -37 128 13 3 912 520 259 221 22 chr12 42900314 42900626 -78356904 - MTE2b LTR MaLR -4 375 2 3 912 361 296 212 16 chr12 42901360 42901549 -78355981 + MIR SINE MIR 7 232 -30 3 912 402 121 0 0 chr12 42903435 42903501 -78354029 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 3 912 352 255 83 19 chr12 42903501 42903609 -78353921 - PB1D10 SINE Alu 0 117 3 3 912 3639 61 2 2 chr12 42903844 42904307 -78353223 - L1_Mus1 LINE L1 0 6567 6105 3 912 183 80 0 0 chr12 42904572 42904597 -78352933 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 3 912 180 0 0 0 chr12 42904993 42905013 -78352517 + (T)n Simple_repeat Simple_repeat 1 20 0 3 912 505 303 75 2 chr12 42906545 42906737 -78350793 - B4A SINE B4 -30 262 41 3 912 198 0 0 0 chr12 42907582 42907604 -78349926 + (T)n Simple_repeat Simple_repeat 1 22 0 3 912 1065 82 0 39 chr12 42907604 42907757 -78349773 - B1_Mus2 SINE Alu 0 147 1 3 912 346 220 62 40 chr12 42909094 42909217 -78348313 + PB1D10 SINE Alu 6 127 -22 3 912 3428 30 0 2 chr12 42909579 42909976 -78347554 - MTA_Mm LTR MaLR 0 396 1 3 912 225 226 0 131 chr12 42910218 42910279 -78347251 - RSINE1 SINE B4 -28 137 85 3 912 258 32 0 0 chr12 42910285 42910316 -78347214 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 912 586 235 76 0 chr12 42910357 42910489 -78347041 - ID_B1 SINE B4 -1 223 82 3 912 378 0 0 0 chr12 42911934 42911976 -78345554 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 912 31751 25 0 1 chr12 42912476 42916418 -78341112 + L1Md_T LINE L1 1646 5586 -297 3 912 8032 55 1 0 chr12 42916418 42917413 -78340117 + L1Md_T LINE L1 5587 6582 0 3 912 1824 215 59 7 chr12 42917476 42917916 -78339614 - Lx2B LINE L1 -4 6996 6534 3 912 700 152 0 39 chr12 42917913 42918043 -78339487 - L1_Mm LINE L1 -1040 4843 4719 3 912 4260 140 92 34 chr12 42918047 42918948 -78338582 + L1_Mur1 LINE L1 4704 5656 -230 3 912 374 53 0 17 chr12 42919303 42919361 -78338169 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 3 912 1157 71 0 0 chr12 42919365 42919506 -78338024 - B1_Mus1 SINE Alu -6 142 2 3 912 4910 140 85 28 chr12 42920437 42920929 -78336601 - RMER17B LTR ERVK 0 958 431 3 912 1130 56 0 37 chr12 42920929 42921116 -78336414 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 912 4910 140 85 28 chr12 42921116 42921529 -78336001 - RMER17B LTR ERVK -528 430 1 3 912 1014 72 65 0 chr12 42921651 42921790 -78335740 - B1_Mus1 SINE Alu 0 148 1 3 912 256 320 26 13 chr12 42921863 42921939 -78335591 + ID4_ SINE ID 1 77 -6 3 912 252 59 0 0 chr12 42921958 42921992 -78335538 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 912 225 0 0 0 chr12 42921992 42922016 -78335514 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 912 760 315 31 39 chr12 42922044 42922364 -78335166 + MTE2a LTR MaLR 117 421 0 3 912 300 27 0 0 chr12 42922847 42922884 -78334646 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 912 180 77 0 0 chr12 42922884 42922910 -78334620 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 912 3410 122 13 4 chr12 42923396 42923931 -78333599 - Lx2 LINE L1 -1 6996 6457 3 912 207 69 0 0 chr12 42924868 42924897 -78332633 + (ATG)n Simple_repeat Simple_repeat 2 30 0 3 912 282 95 0 0 chr12 42924912 42924954 -78332576 + (GGA)n Simple_repeat Simple_repeat 3 44 0 3 912 1137 303 138 35 chr12 42924962 42925466 -78332064 - Lx7 LINE L1 -410 7286 6736 3 912 504 152 30 0 chr12 42925466 42925565 -78331965 + Lx2A1 LINE L1 6902 7003 -5 3 912 1137 303 138 35 chr12 42925565 42925689 -78331841 - Lx7 LINE L1 -961 6735 6593 3 912 1200 211 4 0 chr12 42925754 42926014 -78331516 - L1_Mur3 LINE L1 -815 5065 4805 3 912 408 290 97 42 chr12 42926049 42926265 -78331265 + Lx8 LINE L1 6060 6287 -1186 3 912 2447 212 180 40 chr12 42926325 42927057 -78330473 - Lx6 LINE L1 -170 7290 6456 3 912 1294 261 136 88 chr12 42927110 42927555 -78329975 - Lx6 LINE L1 -43 7417 7004 3 912 1934 53 12 0 chr12 42927555 42927800 -78329730 - L1Md_F3 LINE L1 -2 6582 6335 3 912 1294 261 136 88 chr12 42927800 42927970 -78329560 - Lx6 LINE L1 -457 7003 6772 3 912 793 153 17 11 chr12 42927995 42928173 -78329357 + CT-rich Low_complexity Low_complexity 2 180 0 3 912 881 265 48 28 chr12 42928180 42928543 -78328987 - Lx6 LINE L1 -723 6737 6147 3 912 429 309 41 20 chr12 42928587 42928782 -78328748 + Lx8 LINE L1 6309 6507 -966 3 912 245 229 140 44 chr12 42928822 42928936 -78328594 + PB1 SINE Alu 3 127 0 3 912 200 378 171 22 chr12 42929049 42929371 -78328159 + L4 LINE RTE 1286 1655 -374 3 912 1275 93 16 6 chr12 42929438 42929621 -78327909 - B2_Mm2 SINE B2 -9 186 2 3 912 1103 283 137 55 chr12 42931789 42932335 -78325195 + Lx6 LINE L1 6844 7434 -26 3 912 644 304 97 28 chr12 42933975 42934472 -78323058 - L1MC1 LINE L1 -430 5903 5373 3 912 667 33 11 11 chr12 42934728 42934819 -78322711 + (TC)n Simple_repeat Simple_repeat 1 91 0 3 912 702 207 0 0 chr12 42934819 42934998 -78322532 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 912 406 220 241 0 chr12 42935027 42935168 -78322362 - L1MA9 LINE L1 -349 5963 5789 3 912 551 333 51 39 chr12 42935166 42935500 -78322030 + L1MC1 LINE L1 5971 6308 -25 3 912 8260 13 0 0 chr12 42936009 42937658 -78319872 - L1Md_A LINE L1 0 6582 4933 3 912 227 203 73 59 chr12 42937658 42937726 -78319804 + RMER20A LTR ERVK 186 254 -262 3 912 350 290 94 28 chr12 42937981 42938162 -78319368 + LTR79 LTR ERVL 333 525 -2 3 912 436 347 174 21 chr12 42938989 42939460 -78318070 + L2a LINE L2 2535 3077 -342 3 912 211 373 72 9 chr12 42939463 42939574 -78317956 - L2c LINE L2 -11 3376 3259 3 912 468 315 131 60 chr12 42939784 42940203 -78317327 - L2c LINE L2 -438 2981 2533 3 912 1140 354 45 56 chr12 42940250 42940786 -78316744 - MLT1G3 LTR MaLR -48 547 18 3 912 220 164 86 8 chr12 42940950 42941067 -78316463 + (TA)n Simple_repeat Simple_repeat 1 126 0 3 912 29 28 0 0 chr12 42941109 42941145 -78316385 + AT_rich Low_complexity Low_complexity 1 36 0 3 912 374 157 77 18 chr12 42941153 42941407 -78316123 + (TA)n Simple_repeat Simple_repeat 1 269 0 3 912 456 284 211 3 chr12 42941456 42941774 -78315756 - L2c LINE L2 -1119 2300 1917 3 912 645 322 84 60 chr12 42941958 42942242 -78315288 + B4 SINE B4 2 292 0 3 912 271 356 61 22 chr12 42942346 42942580 -78314950 + L2a LINE L2 3103 3396 -30 3 912 478 302 89 107 chr12 42942653 42942990 -78314540 + ORR1E LTR MaLR 1 331 -28 3 912 503 286 14 7 chr12 42945761 42945909 -78311621 + B1F SINE Alu 1 149 0 3 912 389 20 0 20 chr12 42946170 42946221 -78311309 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 912 387 0 0 0 chr12 42946221 42946263 -78311267 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 912 729 229 28 28 chr12 42946836 42947016 -78310514 + B3A SINE B2 3 182 -16 3 912 684 201 7 21 chr12 42947058 42947200 -78310330 + B1_Mus1 SINE Alu 8 147 -1 3 912 721 157 30 6 chr12 42947224 42947391 -78310139 + GA-rich Low_complexity Low_complexity 2 172 0 3 912 194 345 23 23 chr12 42948297 42948383 -78309147 + MER5A DNA MER1_type 79 164 -25 3 912 298 359 28 51 chr12 42948399 42948616 -78308914 - L2 LINE L2 -515 2904 2693 3 912 501 17 0 0 chr12 42951642 42951700 -78305830 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 912 297 0 0 0 chr12 42951700 42951732 -78305798 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 912 274 167 24 0 chr12 42952237 42952321 -78305209 + (TTTG)n Simple_repeat Simple_repeat 2 87 0 4 912 3459 198 66 39 chr12 42953288 42954077 -78303453 - RLTR40 LTR ERVK -7 810 1 4 912 465 256 91 6 chr12 42954195 42954360 -78303170 + MER63D DNA AcHobo 27 205 -856 4 912 318 388 8 0 chr12 42954371 42954492 -78303038 + MER63D DNA AcHobo 258 379 -682 4 912 774 60 0 0 chr12 42956302 42956402 -78301128 + (CAAAG)n Simple_repeat Simple_repeat 3 102 0 4 912 360 291 165 15 chr12 42956674 42956880 -78300650 - LTR82B Low_complexity ERVL -382 448 212 4 912 918 157 252 4 chr12 42956891 42957001 -78300529 - Lx9 LINE L1 -6 7638 7525 4 912 414 0 0 0 chr12 42957001 42957047 -78300483 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 4 912 918 157 252 4 chr12 42957047 42957166 -78300364 - Lx9 LINE L1 -120 7524 7354 4 912 783 244 58 51 chr12 42957238 42957532 -78299998 - RLTR15 LTR ERVK -16 343 48 4 912 52 50 0 0 chr12 42957539 42957619 -78299911 + AT_rich Low_complexity Low_complexity 1 80 0 4 912 231 160 40 0 chr12 42957619 42957669 -78299861 - RLTR15 LTR ERVK -307 52 1 4 912 198 0 0 0 chr12 42957892 42957914 -78299616 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 912 8365 31 0 0 chr12 42958759 42959985 -78297545 - L1Md_T LINE L1 0 6582 5386 4 912 8504 19 0 0 chr12 42960913 42961897 -78295633 + L1Md_T LINE L1 4603 5586 -297 4 912 8889 11 0 0 chr12 42961897 42962916 -78294614 + L1Md_T LINE L1 5587 6582 0 4 912 286 350 43 7 chr12 42963311 42963449 -78294081 - RMER15 LTR ERVL -5 570 428 4 912 228 316 93 13 chr12 42964401 42964552 -78292978 - RMER4B LTR ERVK -401 184 22 4 912 234 271 56 102 chr12 42964955 42965146 -78292384 - MIR SINE MIR -72 190 7 4 912 328 269 103 23 chr12 42967742 42967986 -78289544 - L1MA4 LINE L1 -35 6265 6001 4 912 404 256 49 119 chr12 42968016 42968242 -78289288 - L1MA4 LINE L1 -672 5640 5431 4 912 313 265 122 0 chr12 42968424 42968522 -78289008 - PB1 SINE Alu -7 120 11 4 912 224 346 19 9 chr12 42968439 42968544 -78288986 - ID_B1 SINE B4 -49 175 70 4 912 292 336 50 16 chr12 42968545 42968666 -78288864 + L2a LINE L2 3289 3413 -13 4 912 1714 211 70 25 chr12 42969317 42969716 -78287814 - MTD LTR MaLR 0 419 3 4 912 4040 19 0 0 chr12 42969808 42970277 -78287253 + L1Md_T LINE L1 5118 5586 -297 4 912 8932 7 0 0 chr12 42970277 42971273 -78286257 + L1Md_T LINE L1 5587 6582 0 4 912 304 253 91 26 chr12 42971903 42972057 -78285473 - Tigger9a DNA Tigger -23 709 546 4 912 180 176 0 0 chr12 42972625 42972659 -78284871 + T-rich Low_complexity Low_complexity 1 34 0 4 912 2170 192 128 19 chr12 42972684 42973168 -78284362 - RLTR20A LTR ERVK -3 538 2 4 912 348 103 0 0 chr12 42974005 42974063 -78283467 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 912 256 357 39 29 chr12 42974112 42974317 -78283213 - RMER17C LTR ERVK -83 327 121 4 912 25 75 0 0 chr12 42975657 42975710 -78281820 + AT_rich Low_complexity Low_complexity 1 53 0 4 912 1289 176 149 30 chr12 42976449 42976778 -78280752 - ORR1D1 LTR MaLR -6 368 1 4 912 993 134 0 55 chr12 42976784 42976966 -78280564 - L1Md_F2 LINE L1 -7 6575 6404 4 912 700 247 76 35 chr12 42977345 42977542 -78279988 + MamRep434 DNA TcMar 2 206 -220 4 912 1221 41 0 0 chr12 42978060 42978207 -78279323 - B1_Mus2 SINE Alu 0 147 1 4 912 464 269 100 25 chr12 42979734 42979894 -78277636 + MIRb SINE MIR 77 248 -20 4 912 294 29 0 0 chr12 42981147 42981182 -78276348 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 912 463 341 107 20 chr12 42982753 42983213 -78274317 + L2 LINE L2 1620 2119 -1300 4 912 262 267 52 118 chr12 42983647 42983783 -78273747 + MT2A LTR ERVL 3 129 -404 4 912 799 281 165 29 chr12 42983676 42983991 -78273539 + MTE2b LTR MaLR 18 375 -4 4 912 421 97 14 14 chr12 42985423 42985496 -78272034 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 912 237 158 0 0 chr12 42985498 42985536 -78271994 - B3A SINE B2 -160 38 1 4 912 998 135 172 0 chr12 42985739 42985931 -78271599 - URR1B DNA MER1_type 0 225 1 4 912 1106 264 75 51 chr12 42988358 42988671 -78268859 + L1MA5A LINE L1 4562 4890 -1253 4 912 4173 107 7 0 chr12 42988671 42989251 -78268279 - MT2B2 LTR ERVL 0 584 1 4 912 1106 264 75 51 chr12 42989251 42989388 -78268142 + L1MA5A LINE L1 4891 5023 -1120 4 912 702 288 100 61 chr12 42989404 42990043 -78267487 + L1MA5A LINE L1 5254 5905 -398 4 912 258 105 0 0 chr12 42990224 42990262 -78267268 + (A)n Simple_repeat Simple_repeat 1 38 0 4 912 569 226 68 209 chr12 42990394 42990701 -78266829 - ORR1D2 LTR MaLR -42 328 65 4 913 303 233 36 155 chr12 42991682 42991875 -78265655 - MER96B DNA hAT -229 188 19 4 913 503 315 7 0 chr12 42993348 42993491 -78264039 + B1F1 SINE Alu 1 144 -5 4 913 23 33 0 0 chr12 42993496 42993526 -78264004 + AT_rich Low_complexity Low_complexity 1 30 0 4 913 28 0 0 0 chr12 42993591 42993619 -78263911 + AT_rich Low_complexity Low_complexity 1 28 0 4 913 1443 12 0 6 chr12 42993627 42993801 -78263729 - B2_Mm2 SINE B2 -8 187 15 4 913 244 237 0 0 chr12 42994061 42994120 -78263410 + A-rich Low_complexity Low_complexity 1 59 0 4 913 5199 122 7 0 chr12 42994139 42994908 -78262622 - Lx2A1 LINE L1 -12 6996 6223 4 913 252 0 0 0 chr12 42994923 42994951 -78262579 + (T)n Simple_repeat Simple_repeat 1 28 0 4 913 6608 108 46 35 chr12 42994951 42996028 -78261502 - Lx3B LINE L1 0 6973 5885 4 913 252 188 0 59 chr12 42996028 42996079 -78261451 - MLT1A1 LTR MaLR -267 141 94 4 913 183 42 0 0 chr12 42997373 42997397 -78260133 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 913 2477 179 109 63 chr12 42997795 42998098 -78259432 + RMER6A LTR ERVK 1 338 -382 4 913 785 58 36 14 chr12 42998098 42998237 -78259293 + (GA)n Simple_repeat Simple_repeat 2 143 0 4 913 2477 176 107 59 chr12 42998237 42998646 -78258884 + RMER6A LTR ERVK 321 719 -1 4 913 225 343 124 62 chr12 42999820 42999997 -78257533 - LTR78 LTR ERV1 -270 1034 847 4 913 314 315 99 30 chr12 43000197 43000328 -78257202 - LTR78 LTR ERV1 -663 641 502 1 913 548 279 34 7 chr12 43000614 43000762 -78256768 - LTR78 LTR ERV1 -1150 154 3 1 913 222 287 296 0 chr12 43001056 43001164 -78256366 + MIR SINE MIR 12 151 -111 2 913 402 85 0 0 chr12 43001175 43001234 -78256296 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 3 913 400 300 47 60 chr12 43004072 43004171 -78253359 + B3 SINE B2 70 169 -47 4 913 279 79 0 0 chr12 43004171 43004209 -78253321 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 913 400 300 47 60 chr12 43004209 43004258 -78253272 + B3 SINE B2 170 216 0 4 913 207 306 82 90 chr12 43004799 43004921 -78252609 + MIRb SINE MIR 3 123 -145 6 913 239 239 15 15 chr12 43005455 43005523 -78252007 + L1MC LINE L1 4882 4949 -1197 7 913 7558 63 26 0 chr12 43005598 43006553 -78250977 - L1_Mus1 LINE L1 -1 6566 5587 8 913 690 161 29 99 chr12 43006564 43006736 -78250794 - Lx3B LINE L1 -13 6960 6801 9 913 573 301 9 65 chr12 43007311 43007528 -78250002 - Lx9 LINE L1 -434 7210 7006 1 913 1019 65 0 14 chr12 43008063 43008204 -78249326 - B1_Mus2 SINE Alu 0 147 9 1 913 181 293 103 0 chr12 43009306 43009364 -78248166 - MIRm SINE MIR -196 80 17 1 913 1555 149 102 63 chr12 43009832 43010147 -78247383 + ORR1A3 LTR MaLR 1 327 -2 1 913 10246 146 53 26 chr12 43010147 43012056 -78245474 + ORR1A3-int LTR MaLR 1 1963 0 1 913 1702 184 0 58 chr12 43012056 43012402 -78245128 + ORR1A3 LTR MaLR 1 326 0 1 913 1172 197 78 96 chr12 43012686 43013136 -78244394 + RMER10A LTR ERVL 1 442 0 1 913 210 250 0 67 chr12 43014278 43014338 -78243192 - L2c LINE L2 -1 3386 3331 1 913 22930 6 1 0 chr12 43016443 43019731 -78237799 - L1Md_A LINE L1 0 6582 3293 1 913 247 316 31 53 chr12 43019927 43020154 -78237376 + L1MC LINE L1 3601 3822 -2324 1 913 732 196 64 64 chr12 43020177 43020411 -78237119 + Lx9 LINE L1 7406 7639 -5 1 913 259 326 33 0 chr12 43020470 43020562 -78236968 + L1_Rod LINE L1 5732 5826 -21 1 913 370 243 18 0 chr12 43020956 43021067 -78236463 + L1MD LINE L1 3929 4041 -2105 2 913 709 261 12 13 chr12 43021880 43022045 -78235485 + B3 SINE B2 49 212 -4 2 913 270 0 0 0 chr12 43022045 43022075 -78235455 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2 913 1327 50 6 11 chr12 43022075 43022256 -78235274 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 913 471 35 0 0 chr12 43022293 43022350 -78235180 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 2 913 338 300 105 21 chr12 43022366 43022509 -78235021 + HAL1-3A_ME LINE L1 2284 2438 -420 2 913 742 290 186 16 chr12 43022643 43022965 -78234565 - MTEb LTR MaLR -2 377 1 2 913 321 342 46 33 chr12 43023236 43023465 -78234065 - MLT1E1 LTR MaLR -23 631 300 2 913 201 255 0 0 chr12 43023465 43023516 -78234014 + CT-rich Low_complexity Low_complexity 2 52 0 2 913 750 23 0 0 chr12 43023825 43023913 -78233617 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 2 913 1593 293 15 50 chr12 43023914 43024392 -78233138 - MT2A LTR ERVL -70 463 3 3 913 232 398 67 14 chr12 43026260 43026469 -78231061 - L3 LINE CR1 -1009 3480 3261 3 913 717 73 0 0 chr12 43026929 43027025 -78230505 + (CATATA)n Simple_repeat Simple_repeat 2 97 0 3 913 2560 69 0 0 chr12 43027031 43027364 -78230166 - L1Md_F2 LINE L1 -2 6580 6248 3 913 334 53 35 0 chr12 43027939 43027996 -78229534 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 913 757 285 76 12 chr12 43028004 43028377 -78229153 - L1MB5 LINE L1 -206 5968 5570 3 913 279 203 0 0 chr12 43028381 43028440 -78229090 + CT-rich Low_complexity Low_complexity 2 60 0 3 913 27 49 0 0 chr12 43029555 43029596 -78227934 + AT_rich Low_complexity Low_complexity 1 41 0 3 913 1132 278 54 31 chr12 43030035 43030425 -78227105 - Lx8 LINE L1 -4 7469 7071 3 913 2240 262 95 7 chr12 43030456 43031149 -78226381 - Lx8 LINE L1 -530 6943 6190 3 913 1780 301 32 60 chr12 43032710 43033399 -78224131 + Lx8 LINE L1 6714 7346 -127 3 913 641 256 74 35 chr12 43033399 43033601 -78223929 + B3 SINE B2 1 210 -6 4 913 1780 297 31 63 chr12 43033601 43033721 -78223809 + Lx8 LINE L1 7347 7467 -6 3 913 1948 55 0 0 chr12 43033734 43033972 -78223558 + L1Md_F2 LINE L1 5349 5586 -297 4 913 8210 39 0 3 chr12 43033973 43034968 -78222562 + L1Md_F2 LINE L1 5588 6579 -3 4 913 246 32 0 0 chr12 43035048 43035079 -78222451 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 913 569 314 6 13 chr12 43035898 43036056 -78221474 - RSINE1 SINE B4 -1 164 8 4 913 242 334 160 69 chr12 43036339 43036863 -78220667 - MLT1G3 LTR MaLR 0 579 1 4 913 27 0 0 0 chr12 43036921 43036948 -78220582 + AT_rich Low_complexity Low_complexity 1 27 0 4 913 23 33 0 0 chr12 43036974 43037004 -78220526 + AT_rich Low_complexity Low_complexity 1 30 0 4 913 652 276 13 6 chr12 43037132 43037289 -78220241 - B3 SINE B2 -10 206 49 4 913 805 178 14 7 chr12 43037756 43037903 -78219627 + B1_Mur2 SINE Alu 2 149 0 4 913 201 132 0 0 chr12 43037903 43037941 -78219589 + (CACAA)n Simple_repeat Simple_repeat 3 40 0 4 913 450 0 0 0 chr12 43039474 43039524 -78218006 + (TTA)n Simple_repeat Simple_repeat 2 51 0 5 913 273 240 0 0 chr12 43041116 43041212 -78216318 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 913 420 20 0 0 chr12 43041215 43041264 -78216266 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 913 537 30 0 0 chr12 43041267 43041334 -78216196 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 5 913 287 323 55 39 chr12 43042295 43042473 -78215057 - L2c LINE L2 -222 3165 2985 5 913 198 278 95 76 chr12 43043242 43043347 -78214183 + MIR SINE MIR 17 123 -85 5 913 296 349 143 81 chr12 43044139 43044638 -78212892 + L4 LINE RTE 1409 1938 -91 5 913 425 308 17 45 chr12 43045702 43045879 -78211651 - MER46C DNA MER2_type -38 300 129 5 913 3437 92 8 6 chr12 43046646 43047128 -78210402 - L1_Mus3 LINE L1 -4 6634 6152 5 913 243 0 0 0 chr12 43047450 43047477 -78210053 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 913 566 302 6 6 chr12 43048156 43048319 -78209211 + RSINE1 SINE B4 3 165 0 6 913 585 252 0 0 chr12 43049678 43049793 -78207737 + PB1D9 SINE Alu 1 115 -5 6 913 681 301 138 56 chr12 43050252 43050607 -78206923 - MLT1B LTR MaLR -2 388 5 6 913 203 300 133 0 chr12 43050843 43050933 -78206597 + MIR SINE MIR 123 224 -38 6 913 376 304 187 50 chr12 43051001 43051407 -78206123 + MLT2C2 LTR ERVL 4 464 0 6 913 31 0 0 0 chr12 43051530 43051561 -78205969 + AT_rich Low_complexity Low_complexity 1 31 0 6 913 234 0 0 0 chr12 43051861 43051887 -78205643 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 6 913 239 333 114 34 chr12 43051912 43052061 -78205469 + L3b LINE CR1 52 212 -270 6 913 261 0 0 0 chr12 43052142 43052171 -78205359 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 913 198 0 0 0 chr12 43052812 43052834 -78204696 + (TTG)n Simple_repeat Simple_repeat 3 24 0 6 913 250 341 48 18 chr12 43052860 43053027 -78204503 + L1MC4 LINE L1 6746 6917 -1125 7 913 2789 162 225 8 chr12 43053136 43053727 -78203803 - RMER6D LTR ERVK 0 720 2 7 913 322 301 110 20 chr12 43053768 43053914 -78203616 + HAL1-3A_ME LINE L1 2286 2444 -414 7 913 189 171 0 0 chr12 43053914 43053949 -78203581 + GA-rich Low_complexity Low_complexity 2 36 0 7 913 439 254 0 35 chr12 43053949 43054063 -78203467 + B1F SINE Alu 32 141 -8 7 913 335 341 131 45 chr12 43054197 43054879 -78202651 + L1MC4 LINE L1 7186 7925 -117 7 913 212 320 26 19 chr12 43054909 43055065 -78202465 + (TATATG)n Simple_repeat Simple_repeat 5 161 0 7 913 450 0 0 0 chr12 43055487 43055537 -78201993 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 913 226 348 70 0 chr12 43055718 43055833 -78201697 + MIR SINE MIR 100 222 -40 7 913 198 0 0 0 chr12 43057280 43057302 -78200228 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 913 853 155 14 7 chr12 43057305 43057448 -78200082 - B1_Mur4 SINE Alu -6 144 1 7 913 24 32 0 0 chr12 43057466 43057497 -78200033 + AT_rich Low_complexity Low_complexity 1 31 0 8 913 198 0 0 0 chr12 43058408 43058430 -78199100 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 913 573 76 0 0 chr12 43058430 43058508 -78199022 + (TA)n Simple_repeat Simple_repeat 1 79 0 8 913 310 289 386 14 chr12 43059892 43060180 -78197350 - L1MEg LINE L1 -4910 1174 780 8 913 447 327 84 71 chr12 43060426 43060610 -78196920 - B3 SINE B2 -1 192 1 8 913 231 237 0 17 chr12 43061644 43061704 -78195826 + MLT1A1 LTR MaLR 350 408 0 8 913 25 51 0 0 chr12 43061813 43061852 -78195678 + AT_rich Low_complexity Low_complexity 1 39 0 8 913 293 119 34 0 chr12 43062716 43062775 -78194755 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 8 913 543 170 0 0 chr12 43063249 43063349 -78194181 + (TA)n Simple_repeat Simple_repeat 2 101 0 8 913 28 79 0 0 chr12 43063592 43063655 -78193875 + AT_rich Low_complexity Low_complexity 1 63 0 8 913 301 277 47 74 chr12 43064045 43064193 -78193337 + HAL1-3A_ME LINE L1 1975 2118 -740 9 913 198 91 0 0 chr12 43064196 43064229 -78193301 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 913 579 250 222 32 chr12 43064666 43065013 -78192517 + Charlie2b DNA MER1_type 1776 2188 -594 9 913 209 222 0 16 chr12 43065124 43065188 -78192342 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 913 959 270 38 102 chr12 43066120 43066491 -78191039 - MER67D LTR ERV1 -167 347 1 9 913 339 25 0 0 chr12 43066516 43066556 -78190974 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 913 3374 39 14 2 chr12 43067051 43067486 -78190044 + L1_Mus1 LINE L1 5607 6046 -521 9 913 1037 274 90 59 chr12 43067638 43068323 -78189207 + L1_Mur3 LINE L1 17 686 -7042 9 913 2188 172 62 23 chr12 43068320 43069164 -78188366 + L1_Mur3 LINE L1 859 1731 -4149 9 913 4525 225 84 21 chr12 43069261 43071379 -78186151 + Lx9 LINE L1 5124 7520 -124 9 913 391 155 12 12 chr12 43071671 43071756 -78185774 + CT-rich Low_complexity Low_complexity 2 86 0 9 913 1876 258 108 98 chr12 43071768 43072821 -78184709 - RMER17B LTR ERVK -29 929 1 1 913 355 276 121 44 chr12 43073158 43073456 -78184074 + RodERV21-int LTR ERV1 893 1156 -3835 1 913 12482 47 1 1 chr12 43073947 43076281 -78181249 - L1Md_F2 LINE L1 0 6582 4248 1 913 23 33 0 0 chr12 43076304 43076334 -78181196 + AT_rich Low_complexity Low_complexity 1 30 0 1 913 279 155 17 0 chr12 43076508 43076566 -78180964 + MuLV-int LTR ERV1 4890 4948 -2658 1 913 1056 328 46 65 chr12 43077007 43077918 -78179612 + RodERV21-int LTR ERV1 2805 3698 -1293 1 913 37831 26 0 6 chr12 43077919 43083905 -78173625 - L1Md_T LINE L1 0 6582 641 1 913 4104 158 161 72 chr12 43084213 43084668 -78172862 - RLTR25B LTR ERVK 0 1028 456 1 913 246 62 0 0 chr12 43084668 43084700 -78172830 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 913 4104 158 161 72 chr12 43084700 43085157 -78172373 - RLTR25B LTR ERVK -573 455 35 1 913 1108 72 0 7 chr12 43085342 43085481 -78172049 + B1_Mm SINE Alu 2 139 -8 1 913 207 0 0 0 chr12 43085481 43085504 -78172026 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 913 210 143 0 0 chr12 43085809 43085844 -78171686 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 913 387 407 69 14 chr12 43085865 43086154 -78171376 - MLT1J2 LTR MaLR -106 342 38 1 913 181 417 65 0 chr12 43086385 43086493 -78171037 + MIRc SINE MIR 40 154 -114 1 913 369 0 0 0 chr12 43088518 43088559 -78168971 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 913 604 221 7 122 chr12 43088728 43088759 -78168771 + B3 SINE B2 10 40 -176 1 913 1076 79 14 0 chr12 43088759 43088898 -78168632 + B1_Mm SINE Alu 1 141 -6 1 913 248 70 0 23 chr12 43088901 43088945 -78168585 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 913 604 221 7 122 chr12 43088945 43089048 -78168482 + B3 SINE B2 41 132 -84 1 913 375 41 0 0 chr12 43089369 43089418 -78168112 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 913 230 227 182 0 chr12 43089418 43089484 -78168046 - ID2 SINE ID -3 80 3 1 913 274 261 0 48 chr12 43089491 43089616 -78167914 + T-rich Low_complexity Low_complexity 1 119 0 1 913 312 250 46 0 chr12 43089758 43089866 -78167664 - Lx5 LINE L1 -10 7040 6928 1 913 822 320 102 16 chr12 43090015 43090329 -78167201 - MTD LTR MaLR 0 419 79 1 913 278 229 113 14 chr12 43090777 43090848 -78166682 - MTD LTR MaLR -309 110 33 1 913 2736 108 68 40 chr12 43090976 43091447 -78166083 + Lx3A LINE L1 6494 6977 -4 1 913 26 0 0 0 chr12 43091450 43091476 -78166054 + AT_rich Low_complexity Low_complexity 1 26 0 1 913 688 278 34 10 chr12 43091478 43091685 -78165845 - B3 SINE B2 -4 212 1 1 913 232 356 21 64 chr12 43091752 43091893 -78165637 + MLT1J LTR MaLR 83 217 -295 1 913 207 0 0 0 chr12 43091943 43091966 -78165564 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 913 277 364 0 48 chr12 43092294 43092398 -78165132 + Arthur1 DNA Tip100 10 108 -3839 1 913 1552 155 68 59 chr12 43092456 43092779 -78164751 + ORR1A3 LTR MaLR 1 326 0 1 913 23 54 0 0 chr12 43093163 43093200 -78164330 + AT_rich Low_complexity Low_complexity 1 37 0 1 913 630 306 71 11 chr12 43093355 43093623 -78163907 + B4 SINE B4 1 284 -8 1 913 432 82 0 0 chr12 43093627 43093688 -78163842 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 913 1102 274 40 76 chr12 43093864 43094244 -78163286 + MTE2b LTR MaLR 2 367 -12 1 913 2325 171 22 19 chr12 43094613 43095025 -78162505 - MTC LTR MaLR -8 413 1 1 913 1137 147 67 4 chr12 43095025 43095250 -78162280 - MTC-int LTR MaLR 0 1258 1020 1 913 1970 217 36 22 chr12 43096562 43096977 -78160553 + MTC LTR MaLR 1 421 0 1 913 201 135 0 51 chr12 43097273 43097312 -78160218 + MIRm SINE MIR 222 258 -18 1 913 474 289 11 75 chr12 43097444 43097631 -78159899 + MER3 DNA MER1_type 3 177 -32 1 913 486 187 44 0 chr12 43098870 43098961 -78158569 + MTE2b LTR MaLR 1 95 -284 1 913 1173 61 0 7 chr12 43100100 43100248 -78157282 + B1_Mm SINE Alu 1 147 0 1 913 237 43 42 21 chr12 43100248 43100296 -78157234 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 913 181 250 78 0 chr12 43100418 43100482 -78157048 - MIRb SINE MIR -41 227 159 1 913 336 315 139 48 chr12 43100544 43100774 -78156756 - LTR68 LTR ERV1 -488 252 2 1 913 2182 142 10 51 chr12 43101698 43102107 -78155423 - RMER10A LTR ERVL -7 435 44 1 913 912 239 92 123 chr12 43103033 43103236 -78154294 + MTE2b LTR MaLR 1 179 -200 1 913 468 0 0 0 chr12 43103236 43103288 -78154242 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 1 913 912 239 92 123 chr12 43103288 43103475 -78154055 + MTE2b LTR MaLR 180 379 0 1 913 454 361 7 0 chr12 43103475 43103590 -78153940 + MER2B DNA MER2_type 208 323 -13 1 913 1356 237 79 8 chr12 43103590 43103981 -78153549 + MTD LTR MaLR 1 419 0 1 913 4496 52 0 0 chr12 43104031 43104574 -78152956 - L1Md_F2 LINE L1 -13 6569 6027 1 913 297 0 0 0 chr12 43105421 43105454 -78152076 + (A)n Simple_repeat Simple_repeat 1 33 0 1 913 2941 270 88 13 chr12 43105945 43106964 -78150566 - Lx8 LINE L1 -147 7326 6231 1 913 285 29 0 0 chr12 43107264 43107298 -78150232 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 913 387 0 0 0 chr12 43108616 43108659 -78148871 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 913 24 53 0 0 chr12 43108727 43108765 -78148765 + AT_rich Low_complexity Low_complexity 1 38 0 1 913 463 266 161 0 chr12 43108765 43108889 -78148641 - B3 SINE B2 -68 148 5 1 913 239 326 108 27 chr12 43109285 43109433 -78148097 + MIRm SINE MIR 24 183 -93 1 913 462 321 171 36 chr12 43109570 43109961 -78147569 - MLT1L LTR MaLR -8 602 159 1 913 587 284 61 76 chr12 43110518 43110716 -78146814 - RMER30 DNA MER1_type -1 201 7 1 913 1422 52 0 109 chr12 43110910 43111149 -78146381 + L1Md_F2 LINE L1 6367 6579 -3 1 913 183 100 0 0 chr12 43111743 43111773 -78145757 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 913 583 269 66 16 chr12 43112913 43113140 -78144390 + Lx7 LINE L1 5620 5860 -722 1 913 258 32 0 0 chr12 43113367 43113398 -78144132 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 913 409 251 18 6 chr12 43113419 43113529 -78144001 + ID4 SINE ID 8 115 -37 1 913 245 254 30 0 chr12 43113715 43113782 -78143748 + GA-rich Low_complexity Low_complexity 2 70 0 1 913 341 268 119 13 chr12 43114323 43114482 -78143048 + MER33 DNA MER1_type 127 302 -22 1 913 362 355 82 53 chr12 43115104 43115422 -78142108 - MLT1A0 LTR MaLR -18 347 21 1 913 26 50 0 0 chr12 43117066 43117106 -78140424 + AT_rich Low_complexity Low_complexity 1 40 0 1 913 574 220 80 111 chr12 43117319 43117544 -78139986 - Lx3C LINE L1 -4 6972 6755 1 913 1907 172 72 46 chr12 43117545 43117978 -78139552 - RLTR41 LTR ERV1 -2 444 1 1 913 2808 171 85 28 chr12 43117979 43118612 -78138918 + Lx3C LINE L1 6088 6756 -220 1 913 1420 175 4 0 chr12 43119064 43119304 -78138226 + MTC LTR MaLR 1 241 -180 1 913 289 131 0 47 chr12 43119307 43119371 -78138159 + MTC-int LTR MaLR 992 1052 -206 1 913 5866 230 64 62 chr12 43119374 43121056 -78136474 - Lx7 LINE L1 0 7696 6011 1 913 341 198 0 12 chr12 43121123 43121205 -78136325 + G-rich Low_complexity Low_complexity 2 82 0 1 913 252 275 32 32 chr12 43121215 43121309 -78136221 + RMER4A LTR ERVK 13 106 -360 1 913 9130 192 102 20 chr12 43121571 43122278 -78135252 - Lx7 LINE L1 -1685 6011 5288 1 114 4041 53 6 0 chr12 43122278 43122785 -78134745 - L1Md_F2 LINE L1 0 6582 6073 1 914 9130 190 121 19 chr12 43122785 43124627 -78132903 - Lx7 LINE L1 -593 5287 3218 1 914 2682 228 87 6 chr12 43124655 43125313 -78132217 - Lx7 LINE L1 -6708 1020 310 1 914 263 221 114 38 chr12 43125324 43125456 -78132074 + MTC-int LTR MaLR 1056 1197 -61 1 914 1347 187 134 20 chr12 43125772 43126077 -78131453 + MTC LTR MaLR 78 417 -4 1 914 4486 84 11 3 chr12 43126403 43127026 -78130504 - L1_Mus3 LINE L1 -6 6632 6005 1 914 291 154 0 0 chr12 43127026 43127078 -78130452 - L1_Mur1 LINE L1 -2999 2887 2836 1 914 9704 132 29 7 chr12 43127068 43129178 -78128352 - L1VL4 LINE L1 -3113 2770 609 1 914 427 266 18 0 chr12 43130187 43130296 -78127234 + B3 SINE B2 2 112 -104 1 914 261 163 0 0 chr12 43130310 43130359 -78127171 + T-rich Low_complexity Low_complexity 2 50 0 1 914 369 347 91 17 chr12 43130554 43130730 -78126800 - MIR SINE MIR -48 214 26 1 914 223 135 77 0 chr12 43132017 43132069 -78125461 + T-rich Low_complexity Low_complexity 1 56 0 1 914 242 241 35 0 chr12 43133674 43133732 -78123798 - tRNA-Ala-GCY_ tRNA tRNA -8 67 8 1 914 222 254 67 17 chr12 43133752 43133812 -78123718 - PB1D10 SINE Alu -11 106 44 1 914 199 311 0 72 chr12 43133821 43133918 -78123612 + MIRb SINE MIR 16 105 -163 1 914 787 275 127 13 chr12 43134077 43134313 -78123217 - MTD LTR MaLR -1 418 156 1 914 344 59 0 19 chr12 43134377 43134429 -78123101 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 914 1087 86 0 0 chr12 43134434 43134573 -78122957 - B1_Mus2 SINE Alu -8 139 1 1 914 676 104 0 9 chr12 43134980 43135087 -78122443 + B2_Mm2 SINE B2 2 107 -88 1 914 353 141 0 14 chr12 43135244 43135316 -78122214 + CT-rich Low_complexity Low_complexity 1 71 0 1 914 491 313 26 47 chr12 43135316 43135507 -78122023 - B3A SINE B2 -10 188 2 1 914 191 330 152 11 chr12 43135509 43135601 -78121929 - MIRm SINE MIR -16 260 156 1 914 211 202 189 67 chr12 43135859 43135949 -78121581 + MER5B DNA MER1_type 78 178 0 1 914 2313 200 36 30 chr12 43136324 43136882 -78120648 - RLTR31_Mm LTR ERVK 0 561 1 1 914 423 0 0 0 chr12 43136897 43136944 -78120586 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 914 396 0 0 0 chr12 43136944 43136987 -78120543 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 914 230 227 11 22 chr12 43136987 43137065 -78120465 + Lx9 LINE L1 7517 7594 -50 1 914 2276 90 3 38 chr12 43137855 43138200 -78119330 - L1Md_F2 LINE L1 0 6582 6250 1 914 318 267 70 11 chr12 43138725 43138838 -78118692 + B1F SINE Alu 1 120 0 1 914 1024 284 68 24 chr12 43139144 43139473 -78118057 + ORR1D2 LTR MaLR 1 370 0 2 914 480 298 74 103 chr12 43139531 43139778 -78117752 - L1MC LINE L1 -871 5275 5024 2 914 533 76 0 12 chr12 43139778 43139858 -78117672 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 2 914 480 298 74 103 chr12 43139858 43139881 -78117649 - L1MC LINE L1 -1123 5023 5003 2 914 396 257 33 59 chr12 43139881 43140034 -78117496 - RSINE1 SINE B4 -13 152 4 2 914 480 298 74 103 chr12 43140034 43140181 -78117349 - L1MC LINE L1 -1144 5002 4869 2 914 256 344 115 0 chr12 43140936 43141032 -78116498 - ID_B1 SINE B4 -7 217 111 2 914 2834 208 66 14 chr12 43141747 43142754 -78114776 - Lx5 LINE L1 -478 6572 5391 2 914 476 125 0 0 chr12 43142752 43142824 -78114706 + Lx6 LINE L1 5598 5669 -1791 2 914 374 172 0 0 chr12 43142818 43142882 -78114648 - Lx5 LINE L1 -485 5395 5332 2 914 10055 65 1 1 chr12 43142909 43144210 -78113320 + L1Md_F2 LINE L1 4287 5586 -297 2 914 7961 47 8 2 chr12 43144210 43145199 -78112331 + L1Md_F2 LINE L1 5587 6581 -1 2 914 14749 188 62 16 chr12 43145201 43148137 -78109393 - Lx5 LINE L1 -753 5127 2095 2 914 216 97 0 0 chr12 43148137 43148168 -78109362 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 914 14749 188 62 16 chr12 43148168 43148682 -78108848 - Lx5 LINE L1 -3786 2094 1520 2 914 411 98 0 0 chr12 43148958 43149019 -78108511 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 914 905 160 27 32 chr12 43149391 43149578 -78107952 - B2_Mm2 SINE B2 -9 186 1 2 914 702 35 0 0 chr12 43150812 43150897 -78106633 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 914 387 322 52 0 chr12 43151613 43151728 -78105802 - ID_B1 SINE B4 -23 201 81 2 914 1211 243 35 28 chr12 43152620 43153047 -78104483 - MER95 LTR ERV -1 430 1 2 914 2107 184 55 10 chr12 43153714 43154115 -78103415 - MTC LTR MaLR 0 421 3 2 914 216 0 0 0 chr12 43154295 43154319 -78103211 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 914 390 337 228 30 chr12 43154319 43154616 -78102914 - Lx8 LINE L1 -145 7328 6973 2 914 1040 282 26 33 chr12 43155240 43155544 -78101986 - Lx8 LINE L1 -511 6962 6661 2 914 949 233 9 41 chr12 43155872 43155925 -78101605 - B3 SINE B2 -4 212 165 2 914 468 123 0 0 chr12 43155925 43155998 -78101532 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 914 949 233 9 41 chr12 43155998 43156163 -78101367 - B3 SINE B2 -52 164 1 2 914 1148 243 61 18 chr12 43156203 43156480 -78101050 - Lx8 LINE L1 -801 6672 6384 2 914 450 0 0 0 chr12 43158652 43158702 -78098828 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 914 378 0 0 0 chr12 43158702 43158743 -78098787 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 914 693 217 13 0 chr12 43159058 43159210 -78098320 - Lx9 LINE L1 -787 6857 6704 2 914 536 202 143 42 chr12 43159206 43159423 -78098107 + Lx9 LINE L1 7404 7642 -2 2 914 342 225 48 29 chr12 43159602 43159707 -78097823 - Lx9 LINE L1 -31 7613 7507 2 914 393 294 25 16 chr12 43160940 43161061 -78096469 + ID_B1 SINE B4 76 197 -27 2 914 388 291 33 26 chr12 43160948 43161109 -78096421 + B1F SINE Alu 5 149 0 2 914 22 0 0 0 chr12 43161182 43161204 -78096326 + AT_rich Low_complexity Low_complexity 1 22 0 2 914 3697 7 119 14 chr12 43161777 43162223 -78095307 + MT2_Mm LTR ERVL 1 493 0 2 914 350 260 9 63 chr12 43162300 43162411 -78095119 - ORR1D2 LTR MaLR -265 105 1 2 914 4514 201 46 11 chr12 43162550 43163450 -78094080 - Lx6 LINE L1 -339 7121 6191 2 914 1827 154 15 30 chr12 43163450 43163778 -78093752 - ORR1A4 LTR MaLR -1 328 6 2 914 2201 237 35 19 chr12 43163779 43164343 -78093187 - Lx6 LINE L1 -1278 6182 5610 2 914 21 36 0 0 chr12 43164498 43164526 -78093004 + AT_rich Low_complexity Low_complexity 1 28 0 2 914 486 361 75 41 chr12 43164756 43165074 -78092456 - LTR40a LTR ERVL -182 337 9 2 914 2412 277 68 27 chr12 43165242 43166069 -78091461 - RCHARR1 DNA MER1_type -111 863 3 2 914 180 111 0 0 chr12 43166130 43166157 -78091373 + (T)n Simple_repeat Simple_repeat 1 27 0 2 914 308 94 0 19 chr12 43167457 43167511 -78090019 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 2 914 222 187 26 39 chr12 43167756 43167834 -78089696 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 914 596 268 30 59 chr12 43167883 43168085 -78089445 - B3A SINE B2 -1 197 2 2 914 486 297 14 0 chr12 43168094 43168239 -78089291 - B1F SINE Alu 0 149 3 2 914 180 0 0 0 chr12 43169088 43169108 -78088422 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 914 351 247 83 36 chr12 43172901 43173069 -78084461 - L1MA6 LINE L1 0 6300 6125 2 914 486 315 46 56 chr12 43173086 43173281 -78084249 - B3A SINE B2 -4 194 2 2 914 860 321 61 19 chr12 43173281 43173805 -78083725 - L1MA6 LINE L1 -161 6139 5594 2 914 1358 162 63 8 chr12 43173816 43174071 -78083459 - RMER4A LTR ERVK 0 466 198 2 914 1329 48 0 0 chr12 43174127 43174294 -78083236 - L1Md_T LINE L1 0 6582 6416 2 914 1060 150 63 16 chr12 43174297 43174487 -78083043 - RMER4A LTR ERVK -381 204 6 2 914 681 279 50 30 chr12 43174506 43174690 -78082840 - L1M1 LINE L1 -718 5582 5400 2 914 1166 101 28 0 chr12 43174690 43174869 -78082661 - B2_Mm1t SINE B2 -7 186 3 2 914 681 279 50 30 chr12 43174869 43174983 -78082547 - L1M1 LINE L1 -901 5399 5278 2 914 435 285 35 0 chr12 43175069 43175213 -78082317 + MER2 DNA MER2_type 100 248 -97 2 914 883 281 82 11 chr12 43175309 43175579 -78081951 - B4A SINE B4 -2 290 2 2 914 376 368 184 18 chr12 43177222 43177549 -78079981 - LTR16A LTR ERVL -15 436 56 2 914 701 283 97 47 chr12 43177970 43178248 -78079282 - B4A SINE B4 0 292 1 2 914 296 269 137 11 chr12 43179649 43179752 -78077778 + B1F SINE Alu 9 124 -3 2 914 251 333 13 0 chr12 43180077 43180152 -78077378 - L1MC4 LINE L1 -4489 1726 1651 2 914 364 287 57 8 chr12 43180256 43180379 -78077151 - B1F2 SINE Alu -8 141 13 2 914 304 345 41 27 chr12 43180379 43180402 -78077128 - ID_B1 SINE B4 -8 216 69 2 914 239 0 0 31 chr12 43180716 43180748 -78076782 + (TAG)n Simple_repeat Simple_repeat 1 31 0 2 914 294 291 0 48 chr12 43180997 43181080 -78076450 - RSINE1 SINE B4 0 165 87 2 914 7616 50 6 1 chr12 43181610 43182928 -78074602 - L1Md_F2 LINE L1 -2 6580 5252 2 914 473 104 13 0 chr12 43183244 43183321 -78074209 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 914 240 329 0 0 chr12 43183437 43183516 -78074014 - MLT1G3 LTR MaLR -226 369 291 2 914 34960 82 1 8 chr12 43183517 43189845 -78067685 - L1Md_F2 LINE L1 -12 6570 307 2 914 292 340 106 46 chr12 43190381 43190683 -78066847 + L1M6 LINE L1 160 479 -6017 2 914 465 19 0 0 chr12 43191089 43191143 -78066387 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 914 207 0 0 0 chr12 43191449 43191472 -78066058 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 914 1186 276 54 25 chr12 43191741 43192094 -78065436 - ORR1D2 LTR MaLR -2 368 6 2 914 275 320 41 122 chr12 43192171 43192447 -78065083 + B4 SINE B4 16 277 -15 2 914 357 24 0 0 chr12 43192495 43192537 -78064993 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 914 471 18 0 0 chr12 43192963 43193019 -78064511 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 914 701 296 92 7 chr12 43193027 43193460 -78064070 - L1_Mur2 LINE L1 -1279 4864 4390 2 914 200 31 62 0 chr12 43193460 43193492 -78064038 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 914 651 307 92 52 chr12 43193492 43193629 -78063901 - L1_Mur2 LINE L1 -1746 4397 4279 2 914 365 271 57 16 chr12 43193784 43193908 -78063622 + L1Md_F LINE L1 664 792 -5824 2 914 3696 129 2 50 chr12 43193908 43195031 -78062499 + L1Md_F LINE L1 708 1766 -4117 2 914 301 307 13 0 chr12 43195135 43195210 -78062320 + ID4_ SINE ID 8 83 0 2 914 616 309 50 22 chr12 43195920 43196102 -78061428 + B3 SINE B2 29 215 -1 2 914 194 62 31 0 chr12 43198196 43198228 -78059302 + (GTTTG)n Simple_repeat Simple_repeat 3 35 0 2 914 1789 24 0 0 chr12 43198321 43198526 -78059004 + L1Md_F2 LINE L1 5382 5586 -297 2 914 8114 39 8 0 chr12 43198526 43199500 -78058030 + L1Md_F2 LINE L1 5587 6568 -14 2 914 468 353 0 0 chr12 43199834 43199970 -78057560 - RSINE1 SINE B4 -28 137 2 2 914 26 0 0 0 chr12 43200995 43201021 -78056509 + AT_rich Low_complexity Low_complexity 1 26 0 2 914 270 0 0 0 chr12 43201059 43201089 -78056441 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2 914 748 60 30 0 chr12 43201089 43201189 -78056341 - Lx3_Mus LINE L1 -345 6664 6562 2 914 294 113 21 0 chr12 43201196 43201260 -78056270 - L1_Mus2 LINE L1 0 6582 6514 2 914 292 306 101 9 chr12 43202179 43202288 -78055242 + RSINE1 SINE B4 3 121 -44 2 914 2031 163 88 6 chr12 43202357 43202721 -78054809 + ORR1B1 LTR MaLR 1 394 0 2 914 7952 69 2 2 chr12 43202763 43204472 -78053058 - L1Md_F2 LINE L1 -12 6570 4862 2 914 318 242 74 40 chr12 43204527 43204745 -78052785 - L1ME3B LINE L1 -286 5954 5733 2 914 362 307 0 34 chr12 43204764 43204882 -78052648 - MER5A DNA MER1_type -72 117 4 2 914 984 194 82 0 chr12 43205035 43205241 -78052289 + URR1A DNA MER1_type 4 226 0 2 914 389 331 104 20 chr12 43205378 43205628 -78051902 - MLT1E1A LTR MaLR -409 271 1 2 914 282 95 0 0 chr12 43207805 43207847 -78049683 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 914 263 49 0 24 chr12 43209056 43209098 -78048432 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 2 914 189 0 0 0 chr12 43209146 43209167 -78048363 + (T)n Simple_repeat Simple_repeat 1 21 0 2 914 29 0 0 0 chr12 43209552 43209581 -78047949 + AT_rich Low_complexity Low_complexity 1 29 0 2 914 995 236 69 33 chr12 43210470 43210746 -78046784 - Lx9 LINE L1 -97 7547 7262 2 914 285 75 0 0 chr12 43210850 43210890 -78046640 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 2 914 262 255 17 52 chr12 43210903 43211019 -78046511 + RMER17C LTR ERVK 181 292 -118 2 914 319 340 130 0 chr12 43211454 43211554 -78045976 - PB1D10 SINE Alu -2 115 3 2 914 332 311 65 22 chr12 43211554 43211590 -78045940 - B4A SINE B4 -203 89 50 2 914 369 0 0 0 chr12 43212410 43212451 -78045079 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 2 914 306 0 0 0 chr12 43212578 43212612 -78044918 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 914 195 69 0 0 chr12 43212798 43212827 -78044703 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 914 289 280 78 39 chr12 43212829 43212938 -78044592 - B3A SINE B2 -77 118 9 2 914 315 145 0 0 chr12 43212938 43213007 -78044523 + (T)n Simple_repeat Simple_repeat 1 69 0 2 914 547 224 117 45 chr12 43213009 43213163 -78044367 - MTD LTR MaLR -59 360 196 3 914 698 133 0 59 chr12 43213183 43213253 -78044277 - Lx LINE L1 -7 6647 6579 3 914 5903 139 62 42 chr12 43213253 43214345 -78043185 - RLTR13D3 LTR ERVK 0 1114 1 3 914 698 133 0 59 chr12 43214345 43214410 -78043120 - Lx LINE L1 -76 6578 6520 3 914 2809 105 34 0 chr12 43214410 43214821 -78042709 + Lx LINE L1 5831 6255 -399 3 914 405 0 0 0 chr12 43214861 43214906 -78042624 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 914 441 0 0 0 chr12 43215356 43215405 -78042125 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 914 234 0 0 0 chr12 43215721 43215747 -78041783 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 914 288 0 0 0 chr12 43215747 43215778 -78041752 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 914 965 135 6 0 chr12 43215953 43216116 -78041414 + (GAA)n Simple_repeat Simple_repeat 1 164 0 3 914 186 43 0 0 chr12 43216144 43216167 -78041363 + (CAA)n Simple_repeat Simple_repeat 1 23 0 3 914 394 34 33 17 chr12 43216211 43216271 -78041259 + (CAAAA)n Simple_repeat Simple_repeat 5 65 0 3 914 239 380 10 0 chr12 43216430 43216530 -78041000 - MIRb SINE MIR -137 131 31 3 914 25 75 0 0 chr12 43216656 43216709 -78040821 + AT_rich Low_complexity Low_complexity 1 53 0 3 914 2578 153 44 23 chr12 43217428 43217909 -78039621 - Lx2B LINE L1 -2 6998 6508 3 914 459 35 0 0 chr12 43218007 43218064 -78039466 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 3 914 30 69 0 0 chr12 43218684 43218742 -78038788 + AT_rich Low_complexity Low_complexity 1 58 0 3 914 231 289 0 118 chr12 43220044 43220078 -78037452 + ID_B1 SINE B4 128 224 0 3 914 544 66 13 0 chr12 43220078 43220154 -78037376 + B1_Mus2 SINE Alu 71 147 0 3 914 27 62 0 0 chr12 43220787 43220835 -78036695 + AT_rich Low_complexity Low_complexity 1 48 0 3 914 339 281 96 74 chr12 43222135 43222315 -78035215 - MIR SINE MIR -61 201 24 3 914 182 213 64 0 chr12 43223406 43223453 -78034077 + MIR SINE MIR 88 137 -125 3 914 669 199 73 8 chr12 43223464 43223721 -78033809 - ORR1D1 LTR MaLR 0 374 1 3 914 268 360 24 8 chr12 43223885 43224011 -78033519 - MER117 DNA MER1_type -38 159 32 3 914 539 200 18 64 chr12 43224243 43224402 -78033128 + Lx6 LINE L1 7301 7435 -25 3 914 206 0 69 0 chr12 43224460 43224489 -78033041 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 3 914 30 27 0 0 chr12 43224579 43224616 -78032914 + AT_rich Low_complexity Low_complexity 1 37 0 3 914 21 0 0 0 chr12 43224875 43224896 -78032634 + AT_rich Low_complexity Low_complexity 1 21 0 3 914 1054 198 69 0 chr12 43224915 43225216 -78032314 - RLTR20D LTR ERVK 0 568 192 3 914 13581 51 3 1 chr12 43225246 43227646 -78029884 - L1Md_F2 LINE L1 0 6582 4178 3 914 5548 64 0 0 chr12 43227644 43228364 -78029166 + L1Md_F2 LINE L1 3456 4175 -1708 3 914 867 190 55 15 chr12 43228364 43228541 -78028989 - RLTR20D LTR ERVK -331 203 1 3 914 900 263 5 24 chr12 43228587 43228797 -78028733 - B3 SINE B2 -5 211 6 3 914 186 43 0 0 chr12 43228809 43228832 -78028698 + (TCC)n Simple_repeat Simple_repeat 3 25 0 3 914 519 168 0 0 chr12 43228924 43229019 -78028511 + (TA)n Simple_repeat Simple_repeat 1 95 0 3 914 1244 204 72 18 chr12 43229035 43229314 -78028216 + ORR1D1 LTR MaLR 73 366 -8 3 914 209 364 127 18 chr12 43229584 43229749 -78027781 - MIRb SINE MIR -72 196 14 3 914 328 351 79 0 chr12 43229950 43230115 -78027415 - MER2 DNA MER2_type -26 319 142 3 914 25 0 0 0 chr12 43230672 43230697 -78026833 + AT_rich Low_complexity Low_complexity 1 25 0 3 914 476 355 16 0 chr12 43232289 43232478 -78025052 + HERV16-int LTR ERVL 1238 1429 -3567 3 914 894 276 10 0 chr12 43232786 43232978 -78024552 - B3 SINE B2 -21 195 2 3 914 180 0 0 0 chr12 43233242 43233262 -78024268 + (A)n Simple_repeat Simple_repeat 1 20 0 3 914 612 371 34 34 chr12 43234099 43234392 -78023138 - LTR40a LTR ERVL 0 519 227 3 914 4387 191 73 14 chr12 43234417 43235219 -78022311 + RLTR25B LTR ERVK 1 820 -208 3 914 614 13 13 0 chr12 43235219 43235294 -78022236 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 914 4387 191 73 14 chr12 43235294 43235390 -78022140 + RLTR25B LTR ERVK 821 951 -77 3 914 1893 168 24 83 chr12 43235392 43235801 -78021729 - RLTR41 LTR ERV1 0 446 62 3 914 490 87 0 0 chr12 43235829 43235898 -78021632 + RLTR25B LTR ERVK 960 1028 0 3 914 374 120 13 0 chr12 43236766 43236841 -78020689 + (CAGGG)n Simple_repeat Simple_repeat 1 76 0 3 914 3213 91 111 17 chr12 43236926 43237442 -78020088 - LTRIS2 LTR ERV1 0 564 1 3 914 244 349 0 0 chr12 43237553 43237616 -78019914 + B4A SINE B4 83 145 -147 3 914 411 280 32 0 chr12 43237561 43237654 -78019876 + PB1D7 SINE Alu 6 101 -19 3 914 228 111 0 0 chr12 43239101 43239137 -78018393 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 3 914 299 266 68 38 chr12 43241015 43241148 -78016382 + L1MEc LINE L1 171 307 -6093 3 914 276 321 37 21 chr12 43241489 43241680 -78015850 + L1MEc LINE L1 691 884 -5516 3 914 23 33 0 0 chr12 43242260 43242290 -78015240 + AT_rich Low_complexity Low_complexity 1 30 0 3 914 29774 123 14 15 chr12 43242382 43243942 -78013588 + L1Md_A LINE L1 409 1961 -3922 3 914 293 0 27 0 chr12 43243942 43243979 -78013551 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 914 29774 64 8 1 chr12 43243979 43247223 -78010307 + L1Md_A LINE L1 1962 5234 -649 3 914 1393 229 28 16 chr12 43247266 43247426 -78010104 + ORR1D1 LTR MaLR 1 163 -211 3 914 630 26 0 0 chr12 43247426 43247502 -78010028 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 914 1393 229 28 16 chr12 43247502 43247660 -78009870 + ORR1D1 LTR MaLR 164 323 -51 3 914 2699 75 6 6 chr12 43247670 43248031 -78009499 + L1Md_F2 LINE L1 5226 5586 -297 3 914 7795 55 6 6 chr12 43248031 43249027 -78008503 + L1Md_F2 LINE L1 5587 6582 0 3 914 634 312 92 15 chr12 43249055 43249315 -78008215 + B4A SINE B4 1 280 -12 3 914 734 37 9 0 chr12 43249394 43249501 -78008029 - L1Md_T LINE L1 0 6582 6475 3 914 450 333 73 52 chr12 43250036 43250073 -78007457 + L1MD LINE L1 2144 2180 -3966 3 914 180 0 0 0 chr12 43250073 43250093 -78007437 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 914 450 333 73 52 chr12 43250093 43250493 -78007037 + L1MD LINE L1 2181 2590 -3556 3 914 673 290 59 5 chr12 43250716 43250903 -78006627 - B3 SINE B2 -19 197 1 3 914 932 234 5 41 chr12 43250940 43251158 -78006372 + B3 SINE B2 1 210 -6 3 914 291 322 86 26 chr12 43251316 43251737 -78005793 + L1ME1 LINE L1 2935 3380 -2766 3 914 26 0 0 0 chr12 43251848 43251874 -78005656 + AT_rich Low_complexity Low_complexity 1 26 0 3 914 307 289 154 53 chr12 43251986 43252513 -78005017 + L1ME1 LINE L1 3790 4369 -1777 3 914 3159 45 8 0 chr12 43252547 43252929 -78004601 - IAPEY_LTR LTR ERVK 0 385 1 3 914 4027 30 2 0 chr12 43253008 43253543 -78003987 - L1Md_F2 LINE L1 -644 5938 5403 3 915 544 328 103 51 chr12 43253942 43254404 -78003126 + MLT1E2 LTR MaLR 24 462 -43 3 915 789 323 8 16 chr12 43254493 43254751 -78002779 - Lx8 LINE L1 -589 6884 6629 3 915 679 282 12 0 chr12 43254760 43254930 -78002600 + Lx8 LINE L1 6877 7048 -425 3 915 180 219 0 0 chr12 43255121 43255162 -78002368 + (TATG)n Simple_repeat Simple_repeat 1 41 0 3 915 611 325 19 0 chr12 43255273 43255433 -78002097 + RSINE1 SINE B4 1 163 -2 3 915 440 311 47 23 chr12 43255742 43255913 -78001617 - Charlie1b DNA MER1_type -310 213 39 3 915 393 329 123 53 chr12 43255942 43256260 -78001270 + L1ME1 LINE L1 4817 5156 -990 3 915 506 238 48 0 chr12 43256283 43256409 -78001121 + B1F SINE Alu 13 144 -5 3 915 384 247 11 11 chr12 43256469 43256559 -78000971 + B4A SINE B4 4 93 -199 3 915 387 242 92 23 chr12 43256571 43256602 -78000928 - MTD LTR MaLR 0 379 344 3 915 254 29 0 28 chr12 43256602 43256638 -78000892 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 915 684 288 71 124 chr12 43256638 43257018 -78000512 - MTD LTR MaLR -39 380 21 3 915 259 322 101 91 chr12 43257046 43257244 -78000286 + B4 SINE B4 75 274 -18 3 915 222 160 20 20 chr12 43257289 43257340 -78000190 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 915 313 328 104 7 chr12 43257361 43257496 -78000034 + B1F SINE Alu 1 148 -1 3 915 345 323 127 36 chr12 43257496 43257859 -77999671 + L1ME1 LINE L1 5327 5722 -442 3 915 320 250 235 10 chr12 43258027 43258157 -77999373 + B3A SINE B2 8 168 -30 3 915 342 0 0 0 chr12 43258180 43258218 -77999312 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 915 323 345 112 0 chr12 43258249 43258472 -77999058 + L1ME1 LINE L1 5917 6164 -15 3 915 351 121 0 0 chr12 43258588 43258646 -77998884 + (TTCA)n Simple_repeat Simple_repeat 3 60 0 3 915 272 380 15 30 chr12 43259335 43259468 -77998062 + L2 LINE L2 2909 3039 -380 3 915 261 294 60 87 chr12 43260743 43260777 -77996753 - B3 SINE B2 -8 208 185 3 915 762 239 53 48 chr12 43260777 43260984 -77996546 - B3 SINE B2 -8 208 1 3 915 261 294 60 87 chr12 43260984 43261098 -77996432 - B3 SINE B2 -32 184 64 3 915 3831 238 28 7 chr12 43261134 43262048 -77995482 - RCHARR1 DNA MER1_type -37 937 4 3 915 909 0 0 0 chr12 43262222 43262323 -77995207 + (TTC)n Simple_repeat Simple_repeat 2 102 0 3 915 1313 51 51 0 chr12 43262339 43262516 -77995014 - B2_Mm1t SINE B2 -6 187 2 3 915 225 65 0 0 chr12 43262594 43262625 -77994905 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 915 27 49 0 0 chr12 43263565 43263606 -77993924 + AT_rich Low_complexity Low_complexity 1 41 0 3 915 269 248 19 0 chr12 43263702 43263764 -77993766 + ID4 SINE ID 19 81 -71 3 915 230 259 23 125 chr12 43263770 43263898 -77993632 - RMER12 LTR ERVK -486 836 722 3 915 345 351 74 36 chr12 43264462 43264761 -77992769 + MLT1F2 LTR MaLR 250 552 -8 3 915 207 0 0 0 chr12 43264797 43264820 -77992710 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 915 386 326 90 37 chr12 43264820 43265065 -77992465 + MLT1F2-int LTR MaLR 47 304 -1105 3 915 1384 164 201 0 chr12 43265218 43265492 -77992038 + ORR1A4 LTR MaLR 1 329 0 3 915 21 0 0 0 chr12 43265585 43265606 -77991924 + AT_rich Low_complexity Low_complexity 1 21 0 3 915 304 271 0 96 chr12 43265693 43265787 -77991743 - MER2 DNA MER2_type -38 307 223 3 915 308 234 31 24 chr12 43265891 43266018 -77991512 + (TA)n Simple_repeat Simple_repeat 2 129 0 3 915 244 268 143 31 chr12 43266129 43266387 -77991143 + L1MB8 LINE L1 4318 4604 -1542 3 915 495 257 186 9 chr12 43266513 43266739 -77990791 - RMER1C Other Other -23 1319 1069 3 915 404 348 113 29 chr12 43266742 43267105 -77990425 - RMER1B Other Other -587 755 202 3 915 527 259 58 16 chr12 43267093 43267281 -77990249 + L1MB8 LINE L1 4743 4938 -1208 3 915 1168 251 80 44 chr12 43267323 43267686 -77989844 + MTD LTR MaLR 13 388 -31 3 915 1495 69 9 22 chr12 43267687 43267910 -77989620 - L1_Mus3 LINE L1 -1 6637 6418 3 915 952 48 0 60 chr12 43267910 43268044 -77989486 + L1_Mus3 LINE L1 6303 6428 -210 3 915 255 133 0 22 chr12 43268044 43268090 -77989440 + MTD LTR MaLR 362 406 -13 3 915 750 281 53 27 chr12 43268272 43268703 -77988827 + L1MB8 LINE L1 5126 5569 -602 3 915 962 183 62 13 chr12 43268773 43269000 -77988530 - RLTR31B_Mm LTR ERVK 0 557 320 4 915 782 200 13 111 chr12 43268998 43269223 -77988307 - RLTR31B_Mm LTR ERVK -381 203 1 4 915 289 299 134 23 chr12 43269227 43269398 -77988132 + L1MB8 LINE L1 5918 6107 -71 3 915 309 262 82 0 chr12 43269701 43269823 -77987707 + L1MC LINE L1 5688 5819 -2063 4 915 205 258 30 0 chr12 43269867 43269933 -77987597 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 915 534 297 116 58 chr12 43269942 43270217 -77987313 - B4A SINE B4 -1 291 1 4 915 324 0 0 0 chr12 43270225 43270261 -77987269 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 915 377 206 0 0 chr12 43270277 43270345 -77987185 - ID4_ SINE ID -14 69 2 4 915 552 250 169 36 chr12 43271288 43271483 -77986047 - URR1B DNA MER1_type 0 225 5 4 915 1515 152 96 20 chr12 43271790 43272092 -77985438 - RMER6C LTR ERVK 0 690 366 4 915 335 111 0 0 chr12 43272091 43272136 -77985394 + B1_Mus2 SINE Alu 52 96 -51 4 915 354 23 0 0 chr12 43274575 43274618 -77982912 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 915 873 203 59 21 chr12 43274934 43275120 -77982410 - RMER30 DNA MER1_type -1 201 9 4 915 223 231 19 37 chr12 43275800 43275854 -77981676 - MamSINE1 SINE tRNA -237 53 1 4 915 21 0 0 0 chr12 43276012 43276033 -77981497 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 338 288 161 23 chr12 43276607 43276824 -77980706 + L1MC4 LINE L1 6840 7086 -956 4 915 1753 242 85 8 chr12 43276846 43277366 -77980164 + L1MC4 LINE L1 7268 7827 -215 4 915 1985 193 4 100 chr12 43278382 43278566 -77978964 - MTB_Mm LTR MaLR 0 407 231 4 915 3566 62 20 0 chr12 43278566 43279021 -77978509 + L1_Mus1 LINE L1 6104 6567 0 4 915 1985 193 4 100 chr12 43279021 43279286 -77978244 - MTB_Mm LTR MaLR -177 230 1 4 915 222 37 0 0 chr12 43279630 43279657 -77977873 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 4 915 297 321 37 7 chr12 43280724 43280859 -77976671 + B1F SINE Alu 5 143 -6 4 915 372 289 119 17 chr12 43281593 43281769 -77975761 - MER2 DNA MER2_type -141 204 11 4 915 180 227 0 43 chr12 43282519 43282565 -77974965 - MER5A DNA MER1_type -27 162 119 4 915 2208 199 114 64 chr12 43282675 43283270 -77974260 + RMER20B LTR ERVK 3 627 0 4 915 1978 194 0 15 chr12 43284266 43284668 -77972862 - RMER3D-int LTR ERVK -1309 1533 1138 4 915 262 247 54 33 chr12 43285436 43285528 -77972002 - MLT1A0 LTR MaLR -5 360 267 4 915 720 80 0 0 chr12 43285529 43285629 -77971901 + (TTTTG)n Simple_repeat Simple_repeat 2 101 0 4 915 22203 175 50 16 chr12 43285736 43291416 -77966114 - Lx2B LINE L1 -3 6997 1121 4 915 862 123 65 0 chr12 43291416 43291554 -77965976 - B1_Mus1 SINE Alu 0 148 2 4 915 3993 161 5 80 chr12 43291554 43292146 -77965384 - Lx2B LINE L1 -5537 1120 554 4 915 484 309 23 18 chr12 43292232 43292403 -77965127 - MLT1A0 LTR MaLR -184 181 10 4 915 315 0 0 0 chr12 43292439 43292474 -77965056 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 915 700 122 6 103 chr12 43292638 43292794 -77964736 - L1Md_F2 LINE L1 0 6582 6442 4 915 260 220 85 0 chr12 43293329 43293388 -77964142 - Lx8 LINE L1 -489 6984 6921 4 915 26 74 0 0 chr12 43293449 43293503 -77964027 + AT_rich Low_complexity Low_complexity 1 54 0 4 915 778 306 67 10 chr12 43294664 43294961 -77962569 - Lx8 LINE L1 -323 7150 6837 4 915 22 80 0 0 chr12 43295477 43295527 -77962003 + AT_rich Low_complexity Low_complexity 1 50 0 4 915 503 308 22 39 chr12 43295793 43296023 -77961507 - L1M5 LINE L1 -495 5667 5442 4 915 826 329 107 7 chr12 43296000 43296570 -77960960 + L1MB7 LINE L1 5538 6164 -20 4 915 259 390 22 50 chr12 43296578 43296759 -77960771 - L2 LINE L2 -340 3079 2904 4 915 180 0 0 0 chr12 43297702 43297722 -77959808 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 915 353 271 61 117 chr12 43300016 43300376 -77957154 - L1MB7 LINE L1 -72 6112 5773 4 915 24 0 0 0 chr12 43301769 43301793 -77955737 + AT_rich Low_complexity Low_complexity 1 24 0 4 915 2719 242 59 21 chr12 43301873 43302536 -77954994 + Lx8 LINE L1 6457 7144 -329 4 915 755 147 8 0 chr12 43302538 43302667 -77954863 + B2_Mm2 SINE B2 1 130 -65 4 915 322 273 8 32 chr12 43302711 43302836 -77954694 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 4 915 447 19 0 0 chr12 43302899 43302951 -77954579 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 915 216 0 0 0 chr12 43302961 43302985 -77954545 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 915 1614 195 204 10 chr12 43302989 43303414 -77954116 + Lx9 LINE L1 7131 7637 -7 4 915 180 194 0 0 chr12 43304000 43304036 -77953494 + L4 LINE RTE 990 1025 -1004 4 915 1983 231 18 51 chr12 43304100 43304588 -77952942 + RMER19C LTR ERVK 138 609 -2 4 915 3254 31 21 0 chr12 43304830 43305216 -77952314 - MTA_Mm LTR MaLR -2 394 1 4 915 716 283 78 27 chr12 43305578 43305905 -77951625 - MTD LTR MaLR 0 419 35 4 915 1474 134 9 0 chr12 43305907 43306130 -77951400 - URR1B DNA MER1_type 0 225 1 4 915 291 177 177 0 chr12 43306614 43306676 -77950854 + ORR1E LTR MaLR 39 111 -248 4 915 1883 151 22 0 chr12 43306679 43306990 -77950540 - ORR1A3 LTR MaLR -8 318 1 4 915 600 268 33 84 chr12 43306990 43307256 -77950274 + ORR1E LTR MaLR 106 379 0 4 915 23 0 0 0 chr12 43308331 43308354 -77949176 + AT_rich Low_complexity Low_complexity 1 23 0 4 915 851 272 48 0 chr12 43308388 43308594 -77948936 + B3 SINE B2 1 216 0 4 915 3187 227 74 39 chr12 43308678 43308822 -77948708 - Lx7 LINE L1 -4 7692 7524 4 915 500 30 15 0 chr12 43308822 43308888 -77948642 + (TATAA)n Simple_repeat Simple_repeat 1 67 0 4 915 3187 227 74 39 chr12 43308888 43309069 -77948461 - Lx7 LINE L1 -173 7523 7355 4 915 243 0 0 0 chr12 43309069 43309096 -77948434 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 915 3187 227 74 39 chr12 43309096 43309608 -77947922 - Lx7 LINE L1 -342 7354 6826 4 915 286 369 56 0 chr12 43309711 43309871 -77947659 - L1MCb LINE L1 -5276 769 601 4 915 288 111 0 0 chr12 43310178 43310232 -77947298 + (A)n Simple_repeat Simple_repeat 1 54 0 4 915 198 103 0 0 chr12 43310607 43310636 -77946894 + (TATG)n Simple_repeat Simple_repeat 2 30 0 4 915 733 216 56 51 chr12 43310741 43310956 -77946574 - B3 SINE B2 0 216 1 4 915 575 394 77 58 chr12 43311128 43311675 -77945855 - MLT1F2 LTR MaLR -1 559 3 4 915 385 335 25 12 chr12 43311853 43312013 -77945517 - ERVL-B4-int LTR ERVL -1309 4405 4244 4 915 363 353 84 87 chr12 43312047 43312382 -77945148 - ORR1E LTR MaLR -7 352 19 4 915 478 350 23 0 chr12 43312413 43312590 -77944940 - MTE-int LTR MaLR -181 1399 1219 4 915 317 247 0 86 chr12 43312582 43312675 -77944855 - RMER20B LTR ERVK -10 617 533 4 915 1392 236 244 21 chr12 43312675 43313159 -77944371 - RMER20B LTR ERVK -34 593 2 4 915 646 338 245 45 chr12 43313171 43313939 -77943591 - MTE-int LTR MaLR -395 1185 226 4 915 804 326 38 73 chr12 43313986 43314330 -77943200 + MLT2B3 LTR ERVL 223 554 0 4 915 474 304 173 45 chr12 43315140 43315256 -77942274 + MLT1A0 LTR MaLR 19 143 -222 4 915 398 200 18 18 chr12 43315256 43315368 -77942162 + Lx9 LINE L1 7533 7644 0 4 915 474 304 173 45 chr12 43315368 43315540 -77941990 + MLT1A0 LTR MaLR 144 344 -21 4 915 198 0 0 0 chr12 43316331 43316353 -77941177 + (TATG)n Simple_repeat Simple_repeat 3 24 0 4 915 328 231 71 44 chr12 43316606 43316719 -77940811 - MTEb LTR MaLR -2 377 262 4 915 207 139 0 0 chr12 43316963 43316999 -77940531 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 915 1080 264 52 75 chr12 43317259 43317565 -77939965 + RMER10A LTR ERVL 1 296 -146 4 915 1740 176 116 6 chr12 43317565 43317920 -77939610 - ORR1B1 LTR MaLR 0 394 1 4 915 1080 264 52 75 chr12 43317920 43318052 -77939478 + RMER10A LTR ERVL 297 428 -14 4 915 282 381 9 9 chr12 43318102 43318208 -77939322 + PB1D10 SINE Alu 5 110 -7 4 915 2009 215 16 25 chr12 43318334 43318821 -77938709 + MTC LTR MaLR 1 419 0 4 915 30 45 0 0 chr12 43319971 43320015 -77937515 + AT_rich Low_complexity Low_complexity 1 44 0 4 915 513 0 0 0 chr12 43320656 43320713 -77936817 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 4 915 246 380 10 0 chr12 43321349 43321449 -77936081 + PB1 SINE Alu 17 117 -10 4 915 303 28 0 0 chr12 43321450 43321486 -77936044 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 915 254 274 9 120 chr12 43321595 43321703 -77935827 + L2c LINE L2 3286 3381 -6 4 915 628 196 7 50 chr12 43321773 43321913 -77935617 + B1_Mur3 SINE Alu 1 134 -15 4 915 1975 129 26 0 chr12 43322306 43322615 -77934915 - Lx2 LINE L1 -4 6993 6677 4 915 711 239 22 27 chr12 43322646 43322831 -77934699 - B3A SINE B2 0 198 15 4 915 646 276 120 73 chr12 43322915 43323265 -77934265 + MLT1A0 LTR MaLR 1 408 0 4 915 1229 263 56 33 chr12 43323903 43324296 -77933234 + Lx8 LINE L1 6631 7032 -441 4 915 2461 58 0 0 chr12 43324295 43324642 -77932888 + L1Md_Gf LINE L1 816 1259 -4627 4 915 1543 211 163 34 chr12 43324759 43325176 -77932354 + RMER19C LTR ERVK 141 611 0 4 915 310 298 52 21 chr12 43325368 43325464 -77932066 + MIR SINE MIR 42 140 -122 4 915 18279 50 0 0 chr12 43325835 43328164 -77929366 - L1_Mm LINE L1 -1891 3992 1664 4 915 348 330 156 5 chr12 43328230 43328416 -77929114 + LTR80A LTR ERVL 354 567 -16 4 915 287 388 103 10 chr12 43329091 43329294 -77928236 - MIRb SINE MIR -8 260 39 4 915 852 20 0 0 chr12 43329351 43329453 -77928077 + (AACTG)n Simple_repeat Simple_repeat 4 105 0 4 915 707 33 11 0 chr12 43330621 43330711 -77926819 + (TCC)n Simple_repeat Simple_repeat 3 93 0 4 915 739 47 38 0 chr12 43330755 43330861 -77926669 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 4 915 242 116 23 0 chr12 43330888 43330931 -77926599 + (TCC)n Simple_repeat Simple_repeat 1 44 0 4 915 1491 23 0 0 chr12 43330931 43331106 -77926424 + (TTCTCC)n Simple_repeat Simple_repeat 5 179 0 4 915 3580 142 32 29 chr12 43331107 43331758 -77925772 - RMER6A LTR ERVK -103 653 1 4 915 366 216 154 28 chr12 43332640 43332677 -77924853 + RLTR42-int LTR ERVK 1105 1141 -4381 4 915 297 0 0 0 chr12 43332677 43332710 -77924820 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 915 366 216 154 28 chr12 43332710 43332815 -77924715 + RLTR42-int LTR ERVK 1142 1264 -4258 4 915 321 209 0 23 chr12 43332923 43333011 -77924519 + RLTR42-int LTR ERVK 1075 1160 -4977 5 915 1300 326 57 50 chr12 43333011 43333592 -77923938 + MTC-int LTR MaLR 466 1050 -208 5 915 784 190 19 33 chr12 43333847 43334059 -77923471 + RLTR42-int LTR ERVK 1870 2078 -3444 5 915 29059 88 5 30 chr12 43334060 43339195 -77918335 + L1Md_F2 LINE L1 575 5581 -302 5 915 7453 75 5 2 chr12 43339200 43340199 -77917331 + L1Md_F2 LINE L1 5587 6582 0 5 915 280 133 0 32 chr12 43340205 43340267 -77917263 + RLTR42-int LTR ERVK 2064 2123 -3399 5 915 684 290 106 38 chr12 43340263 43340764 -77916766 + RLTR42-int LTR ERVK 2340 2874 -3263 5 915 530 195 76 0 chr12 43341222 43341340 -77916190 - MTC LTR MaLR 0 419 293 5 915 585 297 30 12 chr12 43341353 43341520 -77916010 - MTC LTR MaLR -251 170 1 5 915 36812 9 0 1 chr12 43341653 43347834 -77909696 + L1Md_A LINE L1 1 5586 -297 5 915 9001 5 0 0 chr12 43347834 43348830 -77908700 + L1Md_A LINE L1 5587 6582 0 5 915 528 164 41 35 chr12 43348888 43349033 -77908497 - Lx9 LINE L1 0 7644 7499 5 915 486 0 0 0 chr12 43349047 43349101 -77908429 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 915 498 293 34 58 chr12 43349101 43349265 -77908265 - MTE2b LTR MaLR -208 171 13 5 915 342 63 0 87 chr12 43349265 43349334 -77908196 + Lx2A LINE L1 6946 7008 0 5 915 299 335 57 90 chr12 43349334 43349346 -77908184 - MTE2b LTR MaLR -367 12 1 5 915 1232 90 0 5 chr12 43350841 43351054 -77906476 + (CA)n Simple_repeat Simple_repeat 1 211 0 5 915 486 0 0 0 chr12 43351055 43351109 -77906421 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 915 580 323 81 5 chr12 43351111 43351332 -77906198 + MER2 DNA MER2_type 108 345 0 5 915 473 301 0 8 chr12 43351524 43351648 -77905882 + MLT1D LTR MaLR 292 414 -91 5 915 21 0 0 0 chr12 43352272 43352293 -77905237 + AT_rich Low_complexity Low_complexity 1 21 0 5 915 2930 176 14 37 chr12 43352374 43352946 -77904584 - Lx LINE L1 0 6654 6096 5 915 3687 138 63 12 chr12 43352946 43353720 -77903810 - Lx LINE L1 -731 5905 5099 5 915 11858 160 8 8 chr12 43353719 43356830 -77900700 - Lx LINE L1 0 6654 3538 5 915 426 81 0 0 chr12 43356828 43356890 -77900640 - MusHAL1 LINE L1 -446 2266 2205 5 915 449 307 31 135 chr12 43356890 43356932 -77900598 + B4 SINE B4 52 73 -219 5 915 829 152 7 46 chr12 43356932 43357084 -77900446 + B1_Mm SINE Alu 2 147 0 5 915 514 112 112 0 chr12 43357084 43357191 -77900339 - MusHAL1 LINE L1 -537 2175 2057 5 915 3390 194 29 23 chr12 43357177 43357926 -77899604 - Lx2B LINE L1 -355 6645 5892 5 915 1097 92 79 6 chr12 43358484 43358648 -77898882 + B2_Mm2 SINE B2 1 176 -19 5 915 189 0 0 0 chr12 43358650 43358671 -77898859 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5 915 201 234 0 0 chr12 43358711 43358775 -77898755 + A-rich Low_complexity Low_complexity 1 64 0 5 915 282 307 131 35 chr12 43358856 43359001 -77898529 + MER5A DNA MER1_type 7 165 -24 5 915 623 35 24 0 chr12 43359197 43359282 -77898248 + (CAAAC)n Simple_repeat Simple_repeat 2 88 0 5 915 2052 146 16 0 chr12 43359596 43359918 -77897612 + ORR1A2 LTR MaLR 1 327 0 5 915 1939 78 8 0 chr12 43360309 43360564 -77896966 - L1_Mus1 LINE L1 0 6567 6311 5 915 954 271 101 14 chr12 43360695 43360983 -77896547 + MTE2a LTR MaLR 1 313 -66 5 915 274 0 0 115 chr12 43361032 43361084 -77896446 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 5 915 1281 61 44 16 chr12 43362238 43362420 -77895110 - B2_Mm2 SINE B2 -8 187 1 5 915 222 118 0 0 chr12 43362637 43362671 -77894859 + (TCTCCC)n Simple_repeat Simple_repeat 5 38 0 5 915 225 287 56 33 chr12 43362671 43362761 -77894769 - ID_B1 SINE B4 -128 96 5 5 915 325 336 88 56 chr12 43362786 43363035 -77894495 - L1ME2 LINE L1 -42 6122 5866 5 915 458 300 57 13 chr12 43363241 43363471 -77894059 - L1ME2 LINE L1 -579 5600 5361 5 915 342 270 171 44 chr12 43363479 43363684 -77893846 - L1MD LINE L1 -946 5200 4970 5 915 520 280 159 41 chr12 43363744 43363957 -77893573 - ORR1E LTR MaLR -1 358 105 5 915 4628 89 29 6 chr12 43363957 43364615 -77892915 - L1Md_F2 LINE L1 -1 6581 5909 5 915 520 280 159 41 chr12 43364615 43364721 -77892809 - ORR1E LTR MaLR -255 104 1 5 915 422 297 134 96 chr12 43364744 43365221 -77892309 - L1ME2 LINE L1 -1307 4839 4345 5 915 4752 108 4 26 chr12 43365222 43365953 -77891577 - L1Md_F2 LINE L1 -1 6581 5867 5 915 1057 100 0 0 chr12 43365953 43366103 -77891427 - L1_Mm LINE L1 -249 5634 5485 5 915 19674 81 6 10 chr12 43366101 43370023 -77887507 + L1Md_F LINE L1 245 4151 -1732 5 915 5618 162 39 8 chr12 43370446 43371477 -77886053 - Lx3B LINE L1 -5 6968 5906 5 915 6662 44 4 5 chr12 43371913 43372736 -77884794 + L1Md_F3 LINE L1 5762 6583 -1 5 915 258 116 0 0 chr12 43372747 43372790 -77884740 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 915 1857 202 58 10 chr12 43372819 43373219 -77884311 + MTC LTR MaLR 1 419 -2 5 915 22 35 0 0 chr12 43374138 43374167 -77883363 + AT_rich Low_complexity Low_complexity 1 29 0 5 915 225 312 0 0 chr12 43375252 43375316 -77882214 + L2b LINE L2 3312 3375 0 5 915 216 0 0 0 chr12 43375798 43375822 -77881708 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 915 950 65 56 21 chr12 43375826 43375968 -77881562 - B1_Mus1 SINE Alu 0 148 2 5 915 1366 167 51 65 chr12 43376138 43376432 -77881098 + RMER6B LTR ERVK 1 290 -171 5 915 465 62 0 0 chr12 43376443 43376508 -77881022 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 5 915 6217 151 4 4 chr12 43376508 43377677 -77879853 - Lx LINE L1 -26 6628 5461 5 915 974 168 5 53 chr12 43377678 43377867 -77879663 + RMER6B LTR ERVK 281 460 -1 5 915 503 328 17 11 chr12 43379215 43379394 -77878136 + MER45B DNA Tip100 2 181 -859 5 915 1705 212 8 13 chr12 43379493 43379865 -77877665 + Lx LINE L1 6284 6653 -1 5 915 1123 184 171 112 chr12 43379936 43380156 -77877374 - RLTR30 LTR ERV1 -2 377 166 5 915 3071 93 0 12 chr12 43380156 43380568 -77876962 + MTB_Mm LTR MaLR 1 407 0 5 915 1123 184 171 112 chr12 43380568 43380703 -77876827 - RLTR30 LTR ERV1 -214 165 1 5 915 580 305 97 38 chr12 43380811 43381182 -77876348 + MER45B DNA Tip100 542 934 -106 5 915 531 207 15 7 chr12 43381214 43381350 -77876180 - Lx7 LINE L1 -2 7694 7558 5 915 215 160 60 0 chr12 43381380 43381430 -77876100 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 5 915 1244 276 22 9 chr12 43381436 43381804 -77875726 + Lx5 LINE L1 6659 7053 -5 5 915 258 263 0 89 chr12 43381850 43381996 -77875534 - Lx7 LINE L1 -194 7502 7370 5 915 28 71 0 0 chr12 43382600 43382656 -77874874 + AT_rich Low_complexity Low_complexity 1 56 0 5 915 291 21 0 59 chr12 43382674 43382725 -77874805 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 915 276 30 0 0 chr12 43382725 43382758 -77874772 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 915 239 247 151 13 chr12 43382758 43382910 -77874620 - RLTR21 LTR ERVK -319 1253 1081 5 915 405 102 0 0 chr12 43383566 43383625 -77873905 + (CAAT)n Simple_repeat Simple_repeat 2 60 0 5 915 1176 93 0 36 chr12 43384487 43384655 -77872875 + B2_Mm2 SINE B2 1 162 -33 5 915 360 0 0 0 chr12 43384655 43384695 -77872835 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 916 815 285 70 22 chr12 43385119 43385392 -77872138 + B4A SINE B4 1 286 -6 5 916 3629 67 32 0 chr12 43385555 43386020 -77871510 + L1_Mus1 LINE L1 6085 6564 -3 5 916 675 37 0 0 chr12 43386085 43386167 -77871363 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 916 288 0 0 0 chr12 43386322 43386354 -77871176 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 916 1408 253 50 2 chr12 43386368 43386768 -77870762 - MTD LTR MaLR 0 419 1 5 916 242 68 0 137 chr12 43386953 43387004 -77870526 - L1_Mus1 LINE L1 -821 5815 5772 5 916 5757 65 36 1 chr12 43387004 43387749 -77869781 + L1_Mus1 LINE L1 5793 6563 -4 5 916 325 135 0 29 chr12 43387835 43387905 -77869625 + L1_Mus3 LINE L1 5576 5640 -998 5 916 861 136 34 0 chr12 43387907 43388083 -77869447 + Lx3A LINE L1 5929 6110 -871 5 916 8204 117 42 18 chr12 43388082 43389384 -77868146 + Lx3A LINE L1 5643 6976 -5 5 916 1917 208 91 32 chr12 43389411 43389882 -77867648 + Lx2B LINE L1 6502 7000 0 5 916 288 345 79 15 chr12 43390242 43390445 -77867085 + Tigger5 DNA MER2_type 23 238 -2168 5 916 21 36 0 0 chr12 43391948 43391976 -77865554 + AT_rich Low_complexity Low_complexity 1 28 0 5 916 1078 73 0 0 chr12 43392655 43392791 -77864739 - B1_Mus1 SINE Alu -12 136 1 5 916 245 304 149 0 chr12 43394081 43394229 -77863301 + MLT1C LTR MaLR 6 175 -292 5 916 1928 235 82 32 chr12 43394261 43395068 -77862462 + L1Md_F LINE L1 168 1021 -5498 5 916 1137 54 7 7 chr12 43395069 43395219 -77862311 + B2_Mm2 SINE B2 1 150 -45 5 916 10136 38 7 7 chr12 43395221 43396441 -77861089 + MMERVK10C-int LTR ERVK 4194 5412 -2169 5 916 645 14 0 0 chr12 43396441 43396515 -77861015 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 916 564 344 86 8 chr12 43396568 43396811 -77860719 - B4A SINE B4 -18 274 13 5 916 270 286 55 55 chr12 43396817 43396998 -77860532 - L1M2 LINE L1 -2554 3326 3146 5 916 1067 29 15 0 chr12 43396998 43397134 -77860396 + B1_Mus1 SINE Alu 11 148 0 5 916 553 287 189 37 chr12 43397147 43398155 -77859375 - L1M2 LINE L1 -2675 3172 2009 5 916 3075 76 2 15 chr12 43398155 43398567 -77858963 + MTB_Mm LTR MaLR 1 407 0 5 916 384 302 126 32 chr12 43398567 43398944 -77858586 - L1M2 LINE L1 -3872 2008 1504 5 916 229 304 36 0 chr12 43399327 43399439 -77858091 - L1M2c LINE L1 -5042 1747 1632 5 916 428 294 142 45 chr12 43399726 43400110 -77857420 - LTR40b LTR ERVL 0 462 14 5 916 5018 72 6 12 chr12 43400524 43401202 -77856328 - L1_Mus1 LINE L1 0 6567 5894 5 916 257 192 69 40 chr12 43401848 43402022 -77855508 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 916 328 213 58 26 chr12 43402179 43402333 -77855197 + (TATAA)n Simple_repeat Simple_repeat 5 163 0 5 916 309 179 54 48 chr12 43402363 43402510 -77855020 + (TATAA)n Simple_repeat Simple_repeat 1 148 0 5 916 1179 128 20 25 chr12 43402841 43403042 -77854488 - RMER16 LTR ERVK 0 533 334 5 916 657 0 0 0 chr12 43403406 43403479 -77854051 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 5 916 7429 103 16 4 chr12 43403494 43404931 -77852599 - L1_Mus4 LINE L1 -23 6613 5168 5 916 5090 116 102 4 chr12 43408288 43409117 -77848413 - Lx3A LINE L1 -3 6978 6068 5 916 232 188 0 0 chr12 43409117 43409165 -77848365 - Lx9 LINE L1 -60 7584 7537 5 916 306 0 0 0 chr12 43409176 43409210 -77848320 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 916 787 292 4 60 chr12 43409659 43409928 -77847602 - Lx7 LINE L1 -314 7382 7129 5 916 3517 247 133 32 chr12 43409920 43411309 -77846221 - L1_Mur3 LINE L1 -1790 4090 2561 5 916 1397 210 156 145 chr12 43411309 43411567 -77845963 + RMER6D LTR ERVK 1 348 -372 6 916 387 73 0 0 chr12 43411567 43411622 -77845908 + (AGTTG)n Simple_repeat Simple_repeat 2 56 0 6 916 1397 210 156 145 chr12 43411622 43412075 -77845455 + RMER6D LTR ERVK 349 720 0 6 916 3553 232 73 37 chr12 43412077 43412339 -77845191 - L1_Mur3 LINE L1 -3316 2564 2293 5 916 333 0 0 0 chr12 43412339 43412376 -77845154 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 916 3553 234 71 39 chr12 43412376 43413478 -77844052 - L1_Mur3 LINE L1 -3588 2292 1149 5 916 380 376 18 13 chr12 43413500 43413729 -77843801 - RMER15 LTR ERVL -105 470 241 6 916 350 357 55 45 chr12 43413825 43414206 -77843324 - L1_Mur3 LINE L1 -6593 1135 751 5 916 438 252 121 25 chr12 43414479 43414853 -77842677 - L1MD LINE L1 -695 5484 5081 6 916 672 286 65 5 chr12 43414985 43415185 -77842345 - B3 SINE B2 0 216 5 6 916 309 311 83 47 chr12 43415204 43415396 -77842134 - L1MEc LINE L1 -2200 4119 3921 6 916 320 111 0 0 chr12 43415444 43415507 -77842023 + L1_Mus3 LINE L1 6576 6638 0 6 916 762 43 0 0 chr12 43415897 43415991 -77841539 + (TG)n Simple_repeat Simple_repeat 2 95 0 6 916 516 271 27 54 chr12 43416002 43416150 -77841380 - B3A SINE B2 -53 145 2 6 916 23 0 0 0 chr12 43416276 43416299 -77841231 + AT_rich Low_complexity Low_complexity 1 23 0 6 916 253 282 61 43 chr12 43416309 43416472 -77841058 - L1MEc LINE L1 -2601 3718 3553 6 916 623 94 43 0 chr12 43416529 43416646 -77840884 - L1_Mus4 LINE L1 -6 6630 6509 6 916 4235 93 2 9 chr12 43416648 43417222 -77840308 + L1_Mus4 LINE L1 5876 6445 -191 6 916 271 0 0 49 chr12 43417321 43417362 -77840168 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 916 328 267 58 44 chr12 43417416 43417553 -77839977 - L1MEc LINE L1 -5297 1103 965 6 916 1024 222 66 154 chr12 43417581 43417991 -77839539 - ORR1D1 LTR MaLR 0 374 1 6 916 6630 50 8 0 chr12 43418022 43418854 -77838676 - L1Md_F2 LINE L1 0 6582 5744 6 916 1537 17 0 0 chr12 43418854 43419026 -77838504 + L1Md_F2 LINE L1 5594 5765 -817 6 916 1750 191 40 14 chr12 43419096 43419442 -77838088 + ORR1B2 LTR MaLR 6 360 -7 6 916 1039 184 31 25 chr12 43419513 43419792 -77837738 - RMER1C Other Other -11 1331 952 6 916 525 32 0 0 chr12 43420653 43420716 -77836814 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 6 916 21 36 0 0 chr12 43420833 43420861 -77836669 + AT_rich Low_complexity Low_complexity 1 28 0 6 916 260 330 77 25 chr12 43421227 43421513 -77836017 - L1ME2z LINE L1 -128 6316 6016 6 916 1275 84 0 0 chr12 43422369 43422547 -77834983 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 916 1231 153 33 0 chr12 43422996 43423211 -77834319 - L1_Mur1 LINE L1 -403 5483 5262 6 916 8197 143 18 11 chr12 43423565 43425875 -77831655 - Lx LINE L1 -7 6647 4324 6 916 58 0 0 0 chr12 43426393 43426451 -77831079 + AT_rich Low_complexity Low_complexity 1 58 0 6 916 1271 47 0 23 chr12 43426648 43426823 -77830707 + L1Md_F2 LINE L1 6412 6582 0 6 916 396 324 209 4 chr12 43427134 43427373 -77830157 + L1MA4 LINE L1 4620 4907 -1236 6 916 312 299 68 0 chr12 43427382 43427499 -77830031 + L1MA4 LINE L1 4856 4980 -1163 6 916 5756 63 24 21 chr12 43427506 43427958 -77829572 - L1_Mus2 LINE L1 -198 6368 5911 6 916 2376 124 42 18 chr12 43427958 43428359 -77829171 + IAPLTR2a LTR ERVK 1 411 0 6 916 5756 73 21 18 chr12 43428359 43428750 -77828780 - L1_Mus2 LINE L1 -656 5910 5521 6 916 998 67 120 0 chr12 43428750 43428900 -77828630 + L1_Mus2 LINE L1 6398 6565 -1 6 916 443 71 0 0 chr12 43428901 43428957 -77828573 - L1Md_A LINE L1 -121 6461 6406 6 916 592 144 0 46 chr12 43428959 43429090 -77828440 + L1Md_F3 LINE L1 6458 6582 -2 6 916 199 0 0 61 chr12 43429148 43429181 -77828349 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 916 367 350 63 55 chr12 43429209 43429463 -77828067 + L1MA4 LINE L1 5003 5258 -885 6 916 507 282 155 22 chr12 43429500 43429823 -77827707 + L1MA4 LINE L1 5319 5675 -625 6 916 220 67 83 0 chr12 43429823 43429883 -77827647 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 916 507 287 222 18 chr12 43429883 43430105 -77827425 + L1MA4 LINE L1 5676 5957 -340 6 916 223 288 202 33 chr12 43430299 43430482 -77827048 + MIRb SINE MIR 55 268 0 6 916 300 111 0 0 chr12 43431247 43431292 -77826238 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 6 916 35463 35 0 0 chr12 43433140 43438397 -77819133 + L1Md_T LINE L1 236 5589 -297 6 916 9005 4 0 0 chr12 43438397 43439393 -77818137 + L1Md_T LINE L1 5590 6585 0 6 916 180 0 0 0 chr12 43439595 43439615 -77817915 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 916 5616 110 24 23 chr12 43441710 43442596 -77814934 - Lx LINE L1 -5 6649 5763 6 916 224 30 0 29 chr12 43442839 43442873 -77814657 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 916 1146 49 14 0 chr12 43442879 43443022 -77814508 - B1_Mus2 SINE Alu -2 145 1 6 916 180 0 0 0 chr12 43443410 43443430 -77814100 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6 916 195 42 0 0 chr12 43443439 43443463 -77814067 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6 916 2524 61 3 3 chr12 43443466 43443793 -77813737 - L1Md_F2 LINE L1 -19 6563 6237 6 916 25 31 0 0 chr12 43443981 43444013 -77813517 + AT_rich Low_complexity Low_complexity 1 32 0 6 916 220 174 0 75 chr12 43444312 43444418 -77813112 + (CATA)n Simple_repeat Simple_repeat 4 101 0 6 916 11520 134 1 0 chr12 43444495 43446269 -77811261 - Lx LINE L1 -621 5262 3488 6 916 6250 108 68 25 chr12 43446254 43447543 -77809987 + L1_Mus3 LINE L1 5293 6638 0 6 916 23 0 0 0 chr12 43447932 43447955 -77809575 + AT_rich Low_complexity Low_complexity 1 23 0 6 916 24 67 0 0 chr12 43448001 43448046 -77809484 + AT_rich Low_complexity Low_complexity 1 45 0 6 916 328 269 172 6 chr12 43448076 43448233 -77809297 + RMER10A LTR ERVL 13 195 -247 6 916 222 37 0 0 chr12 43448242 43448269 -77809261 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 916 304 62 154 0 chr12 43448267 43448397 -77809133 + (CATAT)n Simple_repeat Simple_repeat 1 150 0 6 916 512 15 0 15 chr12 43448443 43448509 -77809021 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 916 300 323 68 21 chr12 43448515 43448705 -77808825 - L1MEg LINE L1 -5028 1056 858 6 916 21 36 0 0 chr12 43448895 43448923 -77808607 + AT_rich Low_complexity Low_complexity 1 28 0 6 916 802 282 181 13 chr12 43449026 43449354 -77808176 - MTD LTR MaLR -9 410 26 6 916 208 308 15 0 chr12 43449650 43449715 -77807815 - MER5A DNA MER1_type -120 69 4 6 916 299 301 0 0 chr12 43449739 43449812 -77807718 + ID4 SINE ID 3 75 -8 6 916 626 245 74 88 chr12 43450712 43450927 -77806603 - MTEa LTR MaLR -1 378 167 6 916 3183 78 7 16 chr12 43450950 43451395 -77806135 - L1Md_F2 LINE L1 -5 6577 6137 6 916 1569 65 0 0 chr12 43451395 43451594 -77805936 + L1Md_F2 LINE L1 5949 6147 -435 6 916 456 333 41 0 chr12 43451596 43451767 -77805763 - MTEa LTR MaLR -201 178 1 6 916 38071 10 0 7 chr12 43453291 43458498 -77799032 + L1Md_A LINE L1 422 5586 -297 6 916 8822 14 0 0 chr12 43458498 43459494 -77798036 + L1Md_A LINE L1 5587 6582 0 6 916 180 0 0 0 chr12 43459592 43459612 -77797918 + (A)n Simple_repeat Simple_repeat 1 20 0 6 916 288 281 139 30 chr12 43459786 43459951 -77797579 - LTR16A LTR ERVL -11 440 258 6 916 5046 148 12 27 chr12 43459992 43460110 -77797420 - Lx4A LINE L1 -597 6461 6355 6 916 911 164 0 7 chr12 43460110 43460257 -77797273 - B1_Mus1 SINE Alu 0 148 3 6 916 5046 138 22 19 chr12 43460257 43461366 -77796164 - Lx4A LINE L1 -704 6354 5227 6 916 2072 144 75 0 chr12 43461368 43461729 -77795801 + Lx4A LINE L1 6454 6841 -217 6 916 1417 232 171 30 chr12 43461864 43462290 -77795240 + Lx2B LINE L1 6501 6986 -14 6 916 603 0 0 0 chr12 43462691 43462758 -77794772 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 916 4873 138 104 5 chr12 43462811 43463648 -77793882 + L1Md_F2 LINE L1 5652 6571 -11 6 916 253 313 168 5 chr12 43463913 43464109 -77793421 + L2a LINE L2 2673 2900 -519 6 916 258 401 5 20 chr12 43464362 43464563 -77792967 + L2a LINE L2 3224 3421 -5 6 916 2456 60 35 0 chr12 43465089 43465405 -77792125 + IAPLTR2b LTR ERVK 1 327 0 6 916 778 229 144 10 chr12 43465495 43465689 -77791841 + ORR1B1 LTR MaLR 1 220 -174 6 916 617 68 23 0 chr12 43465706 43465794 -77791736 - RLTR13B4 LTR ERVK 0 929 840 6 916 4067 76 3 39 chr12 43465778 43466367 -77791163 - RLTR13B4 LTR ERVK -235 568 1 6 916 582 167 28 0 chr12 43466377 43466485 -77791045 + ORR1B2-int LTR MaLR 967 1077 -432 6 916 6433 156 22 2 chr12 43466485 43468249 -77789281 + Lx LINE L1 4846 6648 -6 6 916 1747 204 115 5 chr12 43468309 43468684 -77788846 + ORR1B2-int LTR MaLR 1092 1507 -2 6 916 1391 232 7 17 chr12 43468686 43468988 -77788542 + ORR1B2 LTR MaLR 1 299 -68 6 916 2394 106 3 6 chr12 43468988 43469339 -77788191 + Lx2A1 LINE L1 6634 6983 -25 6 916 308 234 0 0 chr12 43469373 43469437 -77788093 + ORR1B2 LTR MaLR 329 392 -2 6 916 846 242 142 18 chr12 43469440 43469722 -77787808 - Lx6 LINE L1 -46 7414 7098 6 916 564 89 0 0 chr12 43472737 43472816 -77784714 + (GA)n Simple_repeat Simple_repeat 1 79 0 6 916 23 33 0 0 chr12 43472898 43472928 -77784602 + AT_rich Low_complexity Low_complexity 1 30 0 6 916 197 265 12 0 chr12 43475227 43475310 -77782220 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 916 22 35 0 0 chr12 43476132 43476161 -77781369 + AT_rich Low_complexity Low_complexity 1 29 0 6 916 1197 244 3 28 chr12 43476447 43476764 -77780766 - L1_Rod LINE L1 -936 4911 4603 6 916 2809 240 63 40 chr12 43476766 43477660 -77779870 + Lx9 LINE L1 6717 7630 -14 6 916 441 0 0 0 chr12 43477799 43477848 -77779682 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 6 916 334 301 0 79 chr12 43477915 43478016 -77779514 - RSINE1 SINE B4 -25 140 48 6 916 355 298 91 45 chr12 43478522 43478698 -77778832 - RMER30 DNA MER1_type -9 193 10 6 916 182 132 53 0 chr12 43479070 43479108 -77778422 + CT-rich Low_complexity Low_complexity 1 40 0 6 916 477 0 0 0 chr12 43479787 43479840 -77777690 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 916 1173 184 8 51 chr12 43480396 43480429 -77777101 - URR1B DNA MER1_type 0 225 199 6 916 4998 105 14 67 chr12 43480429 43481277 -77776253 - RLTR13B4 LTR ERVK 0 803 1 6 916 1173 184 8 51 chr12 43481277 43481478 -77776052 - URR1B DNA MER1_type -27 198 1 6 916 1544 185 94 12 chr12 43481641 43481980 -77775550 - ORR1B2 LTR MaLR 0 367 1 6 916 1151 319 44 48 chr12 43482107 43482565 -77774965 + MER70A LTR ERVL 17 472 0 6 916 456 310 16 0 chr12 43482602 43482731 -77774799 + MLT1B LTR MaLR 228 358 -32 6 916 388 307 51 51 chr12 43483492 43483674 -77773856 - MLT2B4 LTR ERVL -196 268 89 6 916 4582 123 63 0 chr12 43483800 43484493 -77773037 + RMER19A LTR ERVK 1 737 0 6 916 188 271 42 108 chr12 43484886 43485006 -77772524 + L3 LINE CR1 3211 3322 -1167 6 916 850 136 0 0 chr12 43486572 43486704 -77770826 + L1_Mus1 LINE L1 6436 6567 0 6 916 310 311 19 32 chr12 43486819 43486993 -77770537 + MLT1C LTR MaLR 197 442 -25 6 916 664 232 208 44 chr12 43487170 43487413 -77770117 + Lx7 LINE L1 7271 7545 -151 6 916 1643 141 19 4 chr12 43487413 43487683 -77769847 - Lx3A LINE L1 -7 6974 6701 6 916 383 0 0 21 chr12 43487683 43487731 -77769799 + (TTA)n Simple_repeat Simple_repeat 3 49 0 6 916 664 232 208 44 chr12 43487731 43487752 -77769778 + Lx7 LINE L1 7546 7575 -121 6 916 879 61 0 0 chr12 43487752 43487866 -77769664 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 6 916 664 232 208 44 chr12 43487866 43487964 -77769566 + Lx7 LINE L1 7576 7693 -3 6 916 19724 134 18 29 chr12 43487980 43490802 -77766728 + L1Md_F2 LINE L1 284 3131 -2752 7 916 243 0 0 0 chr12 43490802 43490829 -77766701 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 916 19724 120 10 7 chr12 43490829 43492105 -77765425 + L1Md_F2 LINE L1 3132 4418 -1465 7 916 6009 75 1 1 chr12 43492100 43492897 -77764633 - L1_Mm LINE L1 -669 5214 4418 7 916 4906 42 55 0 chr12 43492895 43493577 -77763953 + L1Md_F2 LINE L1 5548 6266 -318 7 916 244 113 16 31 chr12 43494603 43494667 -77762863 + T-rich Low_complexity Low_complexity 2 64 0 7 916 3377 110 21 8 chr12 43495082 43495604 -77761926 - Lx3_Mus LINE L1 -3 7006 6478 7 916 384 312 54 60 chr12 43495604 43495771 -77761759 - B4A SINE B4 -4 288 123 7 916 224 354 80 26 chr12 43496264 43496415 -77761115 + L2 LINE L2 386 544 -2875 7 916 21 0 0 0 chr12 43498439 43498460 -77759070 + AT_rich Low_complexity Low_complexity 1 21 0 7 916 1495 72 0 5 chr12 43499188 43499384 -77758146 - B2_Mm2 SINE B2 0 195 1 7 916 3837 261 71 31 chr12 43500556 43501380 -77756150 + Lx9 LINE L1 892 1739 -4108 1 916 424 59 29 0 chr12 43501380 43501448 -77756082 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 916 3837 250 76 28 chr12 43501448 43502387 -77755143 + Lx9 LINE L1 1740 2739 -3108 1 916 234 155 11 87 chr12 43502392 43502484 -77755046 + A-rich Low_complexity Low_complexity 3 87 0 3 916 2089 148 52 37 chr12 43502518 43502924 -77754606 - MTC LTR MaLR -9 412 1 4 916 421 264 22 82 chr12 43502925 43503107 -77754423 + L1_Mur3 LINE L1 5199 5369 -511 5 916 771 256 138 17 chr12 43503105 43503395 -77754135 + Lx9 LINE L1 5468 5792 -55 1 916 273 98 78 0 chr12 43503391 43503442 -77754088 + Lx LINE L1 6595 6649 -5 6 916 317 284 31 10 chr12 43503439 43503535 -77753995 + Lx9 LINE L1 5830 5927 -1717 1 916 3495 77 42 14 chr12 43504146 43504644 -77752886 + L1_Mus4 LINE L1 6122 6633 -3 7 916 26 30 0 0 chr12 43504757 43504790 -77752740 + AT_rich Low_complexity Low_complexity 1 33 0 8 916 243 0 0 0 chr12 43504809 43504836 -77752694 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 916 1232 319 44 16 chr12 43504926 43505360 -77752170 + Lx9 LINE L1 6381 6826 -818 1 916 295 371 0 0 chr12 43506140 43506229 -77751301 - B1F SINE Alu -51 98 10 1 916 210 156 0 0 chr12 43506459 43506504 -77751026 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 916 561 99 0 0 chr12 43507633 43507714 -77749816 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 916 1279 263 50 13 chr12 43507717 43508098 -77749432 - RCHARR1 DNA MER1_type -162 812 418 1 916 1087 342 58 30 chr12 43508274 43508844 -77748686 + Lx9 LINE L1 6684 7269 -375 1 916 301 279 99 0 chr12 43508850 43508961 -77748569 - RCHARR1 DNA MER1_type -845 129 8 1 916 309 340 11 11 chr12 43509035 43509130 -77748400 + PB1D10 SINE Alu 23 117 0 1 916 473 329 168 56 chr12 43510423 43510851 -77746679 - MER67D LTR ERV1 0 514 39 1 916 340 209 45 9 chr12 43511432 43511543 -77745987 + (TA)n Simple_repeat Simple_repeat 1 115 0 1 916 1619 221 185 35 chr12 43511658 43512258 -77745272 - RMER6C LTR ERVK 0 690 1 1 916 24 0 0 0 chr12 43512591 43512615 -77744915 + AT_rich Low_complexity Low_complexity 1 24 0 1 916 716 194 14 48 chr12 43513343 43513489 -77744041 - B1_Mur3 SINE Alu -8 141 1 2 916 315 359 102 38 chr12 43513493 43513806 -77743724 - L2a LINE L2 -112 3314 2982 2 916 203 88 29 0 chr12 43513817 43513851 -77743679 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 2 916 406 326 45 0 chr12 43514039 43514171 -77743359 + B3 SINE B2 79 216 0 2 916 230 192 137 0 chr12 43514202 43514275 -77743255 + Lx9 LINE L1 7562 7644 0 2 916 25 0 0 0 chr12 43514275 43514300 -77743230 + AT_rich Low_complexity Low_complexity 1 25 0 2 916 212 346 75 75 chr12 43514300 43514700 -77742830 - L2a LINE L2 -609 2810 2411 2 916 374 182 6 194 chr12 43515588 43515758 -77741772 - RMER16-int LTR ERVK -5268 138 1 2 916 677 174 22 15 chr12 43515758 43515892 -77741638 - RMER16 LTR ERVK 0 533 399 2 114 210 37 0 0 chr12 43515895 43515922 -77741608 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 917 1032 39 0 0 chr12 43515922 43516051 -77741479 - B1_Mm SINE Alu -2 145 17 2 917 523 83 0 0 chr12 43516061 43516133 -77741397 - tRNA-Glu-GAG_ tRNA tRNA -3 72 1 2 917 198 0 0 0 chr12 43516671 43516693 -77740837 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 3 917 218 138 69 0 chr12 43517431 43517489 -77740041 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 917 229 300 54 32 chr12 43517502 43517595 -77739935 - L2a LINE L2 -1658 1761 1667 2 917 965 196 50 0 chr12 43517893 43518092 -77739438 - L1_Mur2 LINE L1 -691 5186 4978 3 917 469 208 30 0 chr12 43518098 43518199 -77739331 - L1_Mur3 LINE L1 -350 5530 5427 3 917 397 261 30 0 chr12 43518245 43518379 -77739151 - L1_Mur2 LINE L1 -3007 2873 2736 3 917 897 61 24 30 chr12 43518381 43518549 -77738981 + (TTCTC)n Simple_repeat Simple_repeat 2 168 0 3 917 327 49 0 0 chr12 43518549 43518590 -77738940 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 917 4257 140 49 16 chr12 43518608 43519347 -77738183 - Lx2 LINE L1 0 6997 6235 3 917 1602 292 65 63 chr12 43519348 43520157 -77737373 - Lx9 LINE L1 -47 7597 6787 3 917 1694 98 27 0 chr12 43520167 43520423 -77737107 + BGLII LTR ERVK 157 419 -2 3 917 196 322 58 42 chr12 43520908 43521028 -77736502 + L2a LINE L2 3280 3401 -25 3 917 1449 304 42 75 chr12 43521947 43522646 -77734884 + RMER1B Other Other 12 528 -538 4 917 1232 269 169 18 chr12 43522653 43523157 -77734373 + RMER1A Other Other 1 448 -582 4 917 471 48 0 0 chr12 43523172 43523234 -77734296 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 917 459 217 0 0 chr12 43523234 43523326 -77734204 + RMER1A Other Other 927 1018 -12 4 917 577 276 0 65 chr12 43523880 43524143 -77733387 + L1_Mur3 LINE L1 870 1115 -6597 4 917 558 271 6 28 chr12 43524155 43524388 -77733142 - Lx7 LINE L1 -799 6897 6667 4 917 405 0 0 0 chr12 43524407 43524452 -77733078 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 917 1240 321 37 21 chr12 43524562 43525043 -77732487 + Lx5 LINE L1 6532 7020 -30 4 917 216 200 0 0 chr12 43526419 43526464 -77731066 + T-rich Low_complexity Low_complexity 1 45 0 4 917 229 310 95 0 chr12 43528933 43529049 -77728481 - MER67C LTR ERV1 -81 433 307 4 917 354 289 91 20 chr12 43529102 43529271 -77728259 - MER67C LTR ERV1 -203 311 137 4 917 893 228 22 35 chr12 43529457 43529689 -77727841 - L1_Rod LINE L1 -293 5554 5326 4 917 661 190 132 17 chr12 43529683 43529918 -77727612 - Lx9 LINE L1 0 7644 7383 4 917 1566 231 42 3 chr12 43529957 43530318 -77727212 - ORR1C1 LTR MaLR 0 378 4 5 917 444 182 7 73 chr12 43530411 43530547 -77726983 + Lx9 LINE L1 7517 7643 -1 5 917 669 242 24 156 chr12 43530792 43531003 -77726527 - B3A SINE B2 -1 197 9 5 917 201 175 0 0 chr12 43531468 43531508 -77726022 + T-rich Low_complexity Low_complexity 1 40 0 5 917 4447 70 22 3 chr12 43531523 43532108 -77725422 - L1Md_F2 LINE L1 -2 6580 5985 5 917 3905 64 5 0 chr12 43532109 43532734 -77724796 + L1Md_F2 LINE L1 5370 5996 -586 5 917 4629 89 46 11 chr12 43532900 43533556 -77723974 - L1_Mus2 LINE L1 0 6566 5888 5 917 865 192 1 1 chr12 43533750 43533925 -77723605 - L1_Mm LINE L1 -483 5691 5488 5 917 266 342 0 0 chr12 43533970 43534049 -77723481 - ID4 SINE ID -3 80 2 5 917 281 345 45 18 chr12 43534049 43534161 -77723369 - PB1D10 SINE Alu -2 115 1 5 917 294 359 17 25 chr12 43534161 43534195 -77723335 - ID SINE ID -143 81 49 5 917 1007 116 0 0 chr12 43534709 43534855 -77722675 + B1_Mus2 SINE Alu 2 147 0 6 917 951 283 113 5 chr12 43535401 43535774 -77721756 + Lx9 LINE L1 7212 7624 -20 6 917 934 300 78 0 chr12 43536044 43536327 -77721203 + MTE2b LTR MaLR 9 313 -66 6 917 214 178 0 0 chr12 43536327 43536372 -77721158 + (CAAAC)n Simple_repeat Simple_repeat 2 46 0 6 917 23 0 0 0 chr12 43537439 43537462 -77720068 + AT_rich Low_complexity Low_complexity 1 23 0 6 917 469 250 118 0 chr12 43537727 43537863 -77719667 + Tigger9a DNA Tigger 560 711 -21 6 917 36699 31 3 7 chr12 43538115 43543413 -77714117 + L1Md_A LINE L1 314 5586 -297 6 917 8328 33 6 0 chr12 43543413 43544402 -77713128 + L1Md_A LINE L1 5587 6581 -1 6 917 21689 144 50 15 chr12 43544886 43546728 -77710802 - Lx LINE L1 -1 6653 4734 6 917 271 0 0 49 chr12 43546728 43546769 -77710761 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 917 21689 164 13 16 chr12 43546769 43546862 -77710668 - Lx LINE L1 -1150 4733 4630 6 917 186 43 0 0 chr12 43546862 43546885 -77710645 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 917 21689 164 13 16 chr12 43546885 43549711 -77707819 - Lx LINE L1 -1254 4629 1841 6 917 752 218 148 11 chr12 43549741 43550024 -77707506 - Lx9 LINE L1 -1 7643 7322 7 917 5944 109 9 18 chr12 43550338 43551826 -77705704 - L1VL2 LINE L1 -2065 1550 75 7 917 3436 92 5 1 chr12 43552173 43552640 -77704890 - Lx9 LINE L1 -1906 5738 5271 7 917 1685 49 9 26 chr12 43552650 43552879 -77704651 - L1Md_F2 LINE L1 0 6582 6358 7 917 477 0 0 0 chr12 43552879 43552937 -77704593 + L1_Mm LINE L1 4542 4599 -1284 7 917 301 284 75 33 chr12 43553799 43553919 -77703611 + RMER30 DNA MER1_type 77 201 -1 7 917 670 307 20 25 chr12 43554262 43554459 -77703071 + B3 SINE B2 18 213 -3 7 917 227 157 98 0 chr12 43555128 43555179 -77702351 + L1MC1 LINE L1 5909 5964 -369 7 917 379 338 21 0 chr12 43555248 43555390 -77702140 + CT-rich Low_complexity Low_complexity 4 148 0 7 917 899 16 32 0 chr12 43555391 43555516 -77702014 + (TG)n Simple_repeat Simple_repeat 1 129 0 7 917 23 33 0 0 chr12 43556206 43556236 -77701294 + AT_rich Low_complexity Low_complexity 1 30 0 8 917 285 293 61 85 chr12 43556591 43556755 -77700775 - MLT1B LTR MaLR -19 371 212 8 917 342 221 502 10 chr12 43556793 43556998 -77700532 - ORR1E LTR MaLR -53 306 1 8 917 250 374 21 14 chr12 43556998 43557139 -77700391 - MLT1B LTR MaLR -211 154 13 8 917 279 145 0 80 chr12 43557516 43557591 -77699939 + Lx LINE L1 6580 6648 -6 8 917 190 81 0 51 chr12 43557607 43557646 -77699884 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 917 340 344 31 15 chr12 43557662 43557792 -77699738 - Charlie1b DNA MER1_type -274 249 118 8 917 228 333 40 0 chr12 43557811 43557886 -77699644 + ID4_ SINE ID 5 82 -1 8 917 198 0 0 0 chr12 43558677 43558699 -77698831 + (T)n Simple_repeat Simple_repeat 1 22 0 8 917 1011 218 4 64 chr12 43559452 43559717 -77697813 - Lx6 LINE L1 -26 7434 7186 8 917 253 140 17 17 chr12 43560797 43560855 -77696675 + CT-rich Low_complexity Low_complexity 3 60 0 8 917 345 47 0 0 chr12 43560861 43560904 -77696626 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 9 917 749 81 0 0 chr12 43561115 43561214 -77696316 + Lx2B LINE L1 6278 6376 -624 9 917 2499 157 45 24 chr12 43561214 43561676 -77695854 + Lx2B LINE L1 6528 6999 -1 9 917 568 269 71 29 chr12 43562017 43562327 -77695203 - Arthur1 DNA Tip100 -144 3803 3481 9 917 245 399 12 42 chr12 43562545 43562710 -77694820 - Arthur1 DNA Tip100 -3598 349 190 9 917 192 200 0 0 chr12 43563649 43563694 -77693836 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 917 322 193 46 40 chr12 43563798 43563949 -77693581 + (TATAA)n Simple_repeat Simple_repeat 4 155 0 9 917 536 0 16 0 chr12 43564748 43564812 -77692718 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 9 917 1896 68 4 0 chr12 43566360 43566608 -77690922 + L1Md_F2 LINE L1 6322 6570 -12 9 917 21 0 0 0 chr12 43566966 43566987 -77690543 + AT_rich Low_complexity Low_complexity 1 21 0 9 917 462 320 136 18 chr12 43567551 43567869 -77689661 - MER110 LTR ERV1 -69 399 1 9 917 23 0 0 0 chr12 43568157 43568180 -77689350 + AT_rich Low_complexity Low_complexity 1 23 0 9 917 22 35 0 0 chr12 43568292 43568321 -77689209 + AT_rich Low_complexity Low_complexity 1 29 0 1 917 1615 162 0 24 chr12 43568743 43569033 -77688497 - Lx LINE L1 0 6654 6372 1 917 798 286 5 29 chr12 43569331 43569540 -77687990 + B3 SINE B2 3 206 -10 1 917 405 0 0 0 chr12 43569929 43569974 -77687556 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 917 434 337 27 54 chr12 43570031 43570291 -77687239 - B4A SINE B4 -35 257 5 1 917 221 167 0 0 chr12 43570305 43570347 -77687183 + T-rich Low_complexity Low_complexity 1 42 0 1 917 1264 190 17 104 chr12 43570744 43571032 -77686498 - Lx5 LINE L1 -457 6593 6331 1 917 1064 57 0 0 chr12 43571041 43571181 -77686349 - L1_Mus1 LINE L1 0 6567 6428 1 917 1435 206 104 12 chr12 43571181 43571602 -77685928 - L1_Mur2 LINE L1 -336 5547 5070 1 917 778 179 46 6 chr12 43571609 43571771 -77685759 + Lx5 LINE L1 6758 6944 -114 1 917 306 0 0 0 chr12 43571771 43571805 -77685725 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 917 687 203 95 63 chr12 43571805 43571895 -77685635 + Lx5 LINE L1 6945 7042 -16 1 917 378 61 0 0 chr12 43571895 43571944 -77685586 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 1 917 1080 320 19 42 chr12 43572645 43573004 -77684526 - MTEa LTR MaLR -2 377 27 1 917 240 194 183 10 chr12 43572975 43573079 -77684451 - MTE-int LTR MaLR -172 1408 1287 1 917 1763 314 66 15 chr12 43573162 43573812 -77683718 - MTE-int LTR MaLR -327 1253 571 1 917 650 274 13 0 chr12 43573787 43573940 -77683590 - MTEa LTR MaLR -222 157 3 1 917 390 291 0 43 chr12 43574008 43574195 -77683335 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 917 4348 64 4 4 chr12 43575405 43575968 -77681562 + L1Md_F2 LINE L1 6020 6582 0 1 917 216 0 0 0 chr12 43576886 43576910 -77680620 + (T)n Simple_repeat Simple_repeat 1 24 0 1 917 412 339 93 33 chr12 43577044 43577440 -77680090 - L1M5 LINE L1 -825 5321 4902 1 917 396 0 0 0 chr12 43577667 43577711 -77679819 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 917 495 0 0 0 chr12 43577711 43577765 -77679765 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 917 792 266 9 33 chr12 43578238 43578448 -77679082 + B3 SINE B2 1 205 -11 1 917 521 315 117 39 chr12 43578653 43579116 -77678414 - L1MD2 LINE L1 -43 6316 5818 1 917 347 310 151 7 chr12 43579178 43579324 -77678206 - MTEb LTR MaLR -8 371 205 1 917 26 82 0 0 chr12 43579837 43579898 -77677632 + AT_rich Low_complexity Low_complexity 1 61 0 1 917 687 281 55 152 chr12 43580849 43581269 -77676261 - MTE2a LTR MaLR 0 379 1 1 917 257 324 117 17 chr12 43581451 43581630 -77675900 - L1MD2 LINE L1 -415 5944 5748 1 917 5459 92 27 1 chr12 43581652 43582427 -77675103 + L1_Mus4 LINE L1 5834 6628 -8 1 917 18962 52 210 6 chr12 43583157 43586824 -77670706 - L1Md_F3 LINE L1 -1 6583 2088 1 917 317 181 0 178 chr12 43586842 43586943 -77670587 - L1_Mur3 LINE L1 -1112 4768 4686 1 917 1364 183 14 24 chr12 43586934 43587225 -77670305 - L1_Mur3 LINE L1 -1531 4349 4062 1 917 13559 103 6 56 chr12 43587223 43588479 -77669051 + L1_Mus1 LINE L1 3784 4921 -962 1 917 1094 96 0 0 chr12 43588479 43588625 -77668905 - B1_Mm SINE Alu -1 146 1 1 917 13559 86 3 25 chr12 43588625 43590263 -77667267 + L1_Mus1 LINE L1 4922 6566 -1 1 917 3339 196 56 10 chr12 43590274 43590626 -77666904 - L1_Mur3 LINE L1 -1812 4068 3711 1 917 1102 83 14 0 chr12 43590626 43590771 -77666759 - B1_Mus2 SINE Alu 0 147 1 1 917 3339 196 56 10 chr12 43590771 43591222 -77666308 - L1_Mur3 LINE L1 -2170 3710 3229 1 917 1273 308 65 14 chr12 43591500 43592007 -77665523 + Lx8 LINE L1 6277 6809 -664 1 917 2630 187 43 12 chr12 43592063 43592556 -77664974 - RMER13A LTR ERVK -352 508 1 1 917 1057 329 63 36 chr12 43592557 43593002 -77664528 + Lx8 LINE L1 6805 7261 -212 1 917 263 288 182 0 chr12 43594344 43594410 -77663120 - ID4_ SINE ID 0 83 6 1 917 384 22 0 0 chr12 43594567 43594612 -77662918 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 917 606 14 0 0 chr12 43594627 43594698 -77662832 + (TTA)n Simple_repeat Simple_repeat 1 71 0 1 917 2080 211 38 41 chr12 43595247 43596105 -77661425 + L1_Mur3 LINE L1 892 1738 -4142 1 917 1600 210 30 8 chr12 43596103 43596473 -77661057 + L1_Mur3 LINE L1 2418 2795 -3082 1 917 1156 46 0 13 chr12 43597259 43597462 -77660068 + L1Md_F3 LINE L1 6412 6584 0 1 917 750 301 33 12 chr12 43597636 43597878 -77659652 - RLTR40 LTR ERVK -5 812 566 1 917 291 374 19 9 chr12 43597927 43598035 -77659495 - B4A SINE B4 -175 117 9 1 917 429 283 13 33 chr12 43598045 43598195 -77659335 - B1_Mur1 SINE Alu 0 149 3 1 917 23 0 0 0 chr12 43599623 43599646 -77657884 + AT_rich Low_complexity Low_complexity 1 23 0 1 917 1812 160 107 43 chr12 43599751 43600189 -77657341 - RMER4A LTR ERVK 0 466 1 1 917 5130 175 22 5 chr12 43600417 43601418 -77656112 + Lx2B LINE L1 5537 6568 -432 1 917 422 216 216 0 chr12 43601904 43602066 -77655464 - Lx9 LINE L1 -9 7635 7439 1 917 695 276 141 52 chr12 43602724 43603321 -77654209 + Lx9 LINE L1 6947 7596 -48 1 917 428 278 125 85 chr12 43603375 43604300 -77653230 + L1_Mur2 LINE L1 1606 2572 -3308 1 917 707 265 146 32 chr12 43604393 43604674 -77652856 - ORR1D1 LTR MaLR -53 321 9 1 917 278 304 40 0 chr12 43604678 43604826 -77652704 + L1_Mur2 LINE L1 4151 4304 -1576 1 917 585 0 0 0 chr12 43604897 43604962 -77652568 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 917 787 285 75 5 chr12 43604980 43605393 -77652137 + L1_Mur2 LINE L1 4598 5030 -817 1 917 2981 262 44 56 chr12 43605394 43606103 -77651427 + Lx5 LINE L1 5950 6643 -407 1 917 1171 102 50 10 chr12 43606103 43606302 -77651228 + L1_Mus4 LINE L1 6429 6635 -1 1 917 2981 262 44 56 chr12 43606302 43606504 -77651026 + Lx5 LINE L1 6644 6850 -200 1 917 654 267 83 43 chr12 43606739 43607128 -77650402 + RLTR28 LTR ERVL 3 429 -52 1 917 474 337 95 11 chr12 43607258 43607606 -77649924 + Lx8 LINE L1 6109 6485 -988 1 917 8223 10 0 0 chr12 43608468 43609415 -77648115 + L1Md_T LINE L1 5663 6582 0 1 917 459 279 184 46 chr12 43609850 43610241 -77647289 - L1M3c LINE L1 -2769 3438 2994 1 917 905 299 73 19 chr12 43610340 43610875 -77646655 - L1M3c LINE L1 -3376 2831 2268 1 917 316 255 85 90 chr12 43611657 43611834 -77645696 - L1MDa LINE L1 -4868 1765 1590 1 917 306 0 0 0 chr12 43611847 43611881 -77645649 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 917 23 68 0 0 chr12 43612088 43612132 -77645398 + AT_rich Low_complexity Low_complexity 1 44 0 1 917 379 345 93 74 chr12 43612803 43612914 -77644616 - L1M3c LINE L1 -5718 423 306 1 917 1942 180 25 3 chr12 43612914 43613282 -77644248 - ORR1C1 LTR MaLR -2 376 1 1 917 379 345 93 74 chr12 43613282 43613536 -77643994 - L1M3c LINE L1 -5836 305 51 1 917 21 0 0 0 chr12 43613633 43613654 -77643876 + AT_rich Low_complexity Low_complexity 1 21 0 1 917 491 265 27 24 chr12 43614860 43615090 -77642440 + Lx8 LINE L1 5663 5925 -1548 1 917 387 0 0 0 chr12 43615801 43615844 -77641686 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 917 3793 81 0 0 chr12 43615851 43616356 -77641174 - L1Md_F2 LINE L1 -632 5251 4747 1 917 6511 54 1 0 chr12 43616353 43617472 -77640058 + L1Md_F2 LINE L1 5266 6385 -197 1 917 5820 9 0 8 chr12 43617472 43618133 -77639397 + L1Md_T LINE L1 5927 6582 0 1 917 1531 52 0 0 chr12 43618149 43618342 -77639188 + L1Md_F2 LINE L1 6382 6574 -8 1 917 396 88 0 0 chr12 43618446 43618503 -77639027 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 917 497 271 14 15 chr12 43618513 43618689 -77638841 - B4 SINE B4 0 292 112 1 917 2604 45 9 0 chr12 43618709 43619044 -77638486 + ORR1A1 LTR MaLR 1 338 -8 1 917 317 318 37 15 chr12 43619293 43619427 -77638103 - B1_Mur1 SINE Alu -8 141 5 1 917 21 0 0 0 chr12 43619999 43620020 -77637510 + AT_rich Low_complexity Low_complexity 1 21 0 1 917 426 69 0 0 chr12 43620109 43620167 -77637363 + (GAAA)n Simple_repeat Simple_repeat 4 61 0 1 917 200 35 35 0 chr12 43620160 43620189 -77637341 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 1 917 818 188 0 6 chr12 43620205 43620376 -77637154 + GA-rich Low_complexity Low_complexity 2 171 0 1 917 21 57 0 0 chr12 43620516 43620551 -77636979 + AT_rich Low_complexity Low_complexity 1 35 0 1 917 333 299 98 47 chr12 43621081 43621274 -77636256 - MLT1A0 LTR MaLR 0 365 163 1 917 1549 88 0 9 chr12 43622330 43622548 -77634982 - L1_Mus2 LINE L1 0 6566 6351 1 917 1461 85 15 0 chr12 43622548 43622747 -77634783 + L1_Mus2 LINE L1 6143 6344 -222 1 917 21 0 0 0 chr12 43623967 43623988 -77633542 + AT_rich Low_complexity Low_complexity 1 21 0 1 917 1083 97 7 0 chr12 43623999 43624144 -77633386 + B1_Mm SINE Alu 2 147 0 1 917 2867 235 82 41 chr12 43625127 43625925 -77631605 - Lx9 LINE L1 -218 7426 6597 1 917 370 252 128 34 chr12 43626023 43626171 -77631359 - RLTR28B LTR ERVL -58 423 262 1 917 268 217 16 16 chr12 43626212 43626273 -77631257 - RLTR28B LTR ERVL -293 188 128 1 917 652 72 17 26 chr12 43627508 43627623 -77629907 + L1Md_F3 LINE L1 6471 6584 0 1 917 315 71 0 0 chr12 43627760 43627802 -77629728 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1 917 235 369 36 0 chr12 43629693 43629804 -77627726 + L2a LINE L2 3303 3417 -9 1 917 183 350 47 82 chr12 43630303 43630536 -77626994 - L3 LINE CR1 -998 3491 3267 1 917 1376 247 82 69 chr12 43632282 43632675 -77624855 + RMER1B Other Other 60 461 -605 1 917 2139 109 9 9 chr12 43632675 43633017 -77624513 + L1_Mus3 LINE L1 6292 6633 -5 1 917 1623 271 179 9 chr12 43633017 43633888 -77623642 + RMER1A Other Other 1 709 -357 1 917 21 57 0 0 chr12 43634372 43634407 -77623123 + AT_rich Low_complexity Low_complexity 1 35 0 1 917 1554 203 51 56 chr12 43635167 43635558 -77621972 + RMER1B Other Other 674 1062 -4 1 917 304 311 41 32 chr12 43635675 43635798 -77621732 - Lx8 LINE L1 -181 7292 7169 1 917 1087 83 7 0 chr12 43635799 43635944 -77621586 + B1_Mm SINE Alu 1 146 -1 1 917 734 233 1 12 chr12 43636124 43636334 -77621196 - L1_Mur3 LINE L1 -1716 4427 4192 1 917 2060 216 123 48 chr12 43636334 43637012 -77620518 + RMER6C LTR ERVK 1 693 -63 1 917 600 14 0 0 chr12 43637048 43637117 -77620413 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 1 917 1695 131 103 13 chr12 43637121 43637431 -77620099 - ORR1A1 LTR MaLR -8 338 1 1 917 1031 24 8 0 chr12 43637436 43637562 -77619968 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 1 917 469 215 0 45 chr12 43637562 43637664 -77619866 + RMER6D LTR ERVK 620 720 0 1 917 1148 236 80 6 chr12 43637675 43637987 -77619543 - L1_Mur3 LINE L1 -1691 4189 3855 1 917 803 350 70 11 chr12 43637986 43638457 -77619073 + Lx8 LINE L1 6843 7341 -132 1 917 207 0 0 0 chr12 43638545 43638568 -77618962 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1 917 32721 33 4 6 chr12 43639293 43644020 -77613510 - L1Md_T LINE L1 0 6582 1864 1 917 2193 131 26 0 chr12 43644031 43644383 -77613147 - L1Md_T LINE L1 -6130 594 234 1 917 355 206 414 21 chr12 43644713 43644898 -77612632 + Lx9 LINE L1 7385 7642 -2 2 917 270 0 0 0 chr12 43644913 43644943 -77612587 + (CCAA)n Simple_repeat Simple_repeat 1 30 0 2 917 441 0 0 0 chr12 43644972 43645021 -77612509 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 2 917 501 141 0 0 chr12 43645136 43645221 -77612309 + (TCCC)n Simple_repeat Simple_repeat 3 87 0 2 917 274 219 40 27 chr12 43645271 43645346 -77612184 + Lx5 LINE L1 6900 6975 -75 2 917 2765 31 148 0 chr12 43645534 43645892 -77611638 - IAPLTR2a LTR ERVK 0 411 1 2 917 3158 233 63 28 chr12 43645895 43646641 -77610889 + Lx7 LINE L1 6260 7031 -665 2 917 515 251 83 6 chr12 43646650 43646830 -77610700 + Lx7 LINE L1 7222 7415 -281 2 917 213 232 29 0 chr12 43646860 43646929 -77610601 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 2 918 1640 175 280 8 chr12 43647277 43647674 -77609856 - RLTR16 LTR ERVK 0 505 1 2 918 1411 131 0 33 chr12 43647867 43648111 -77609419 + L1Md_A LINE L1 6344 6579 -3 2 918 32 26 0 0 chr12 43648881 43648920 -77608610 + AT_rich Low_complexity Low_complexity 1 39 0 2 918 496 324 74 52 chr12 43648923 43649001 -77608529 + B4A SINE B4 1 80 -212 2 918 189 74 0 0 chr12 43649001 43649028 -77608502 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 918 496 324 79 65 chr12 43649028 43649242 -77608288 + B4A SINE B4 80 292 0 2 918 3603 33 0 0 chr12 43650254 43650677 -77606853 - L1Md_F2 LINE L1 -8 6574 6152 2 918 715 318 89 47 chr12 43650729 43651089 -77606441 + RMER13A LTR ERVK 15 389 -471 2 918 1012 76 0 0 chr12 43651720 43651864 -77605666 + L1_Mus2 LINE L1 6422 6565 -1 2 918 509 33 0 0 chr12 43651918 43651978 -77605552 - L1_Mus4 LINE L1 -904 5732 5673 2 918 2683 143 2 2 chr12 43651978 43652411 -77605119 + L1_Mus4 LINE L1 6201 6633 -3 2 918 6060 212 49 13 chr12 43652417 43653701 -77603829 - Lx5 LINE L1 -116 6934 5630 2 918 191 281 70 0 chr12 43653883 43653940 -77603590 + MIRb SINE MIR 117 177 -91 2 918 25 0 0 0 chr12 43654087 43654112 -77603418 + AT_rich Low_complexity Low_complexity 1 25 0 2 918 5023 38 0 0 chr12 43654179 43654778 -77602752 - L1Md_T LINE L1 0 6582 5984 2 918 935 249 51 36 chr12 43655041 43655316 -77602214 + Lx9 LINE L1 6573 6851 -793 2 918 27 29 0 0 chr12 43655771 43655805 -77601725 + AT_rich Low_complexity Low_complexity 1 34 0 2 918 7845 224 55 34 chr12 43656151 43659117 -77598413 + Lx6 LINE L1 3909 6906 -554 2 918 1419 76 0 0 chr12 43659117 43659302 -77598228 - L1_Mus2 LINE L1 -2 6564 6380 2 918 6578 253 29 72 chr12 43659302 43659836 -77597694 + Lx6 LINE L1 6907 7446 -14 2 918 261 0 0 0 chr12 43661009 43661038 -77596492 + (T)n Simple_repeat Simple_repeat 1 29 0 2 918 38366 46 1 4 chr12 43661051 43667826 -77589704 - L1Md_T LINE L1 -1 6656 1 2 918 1678 166 61 105 chr12 43668029 43668420 -77589110 + ORR1C2 LTR MaLR 5 378 -6 2 918 793 180 12 0 chr12 43668431 43668598 -77588932 + CT-rich Low_complexity Low_complexity 2 170 0 2 918 2111 199 60 0 chr12 43668598 43668984 -77588546 + MTC LTR MaLR 13 421 0 2 918 2938 249 28 33 chr12 43669115 43669895 -77587635 - Lx6 LINE L1 -394 7066 6291 2 918 4482 127 27 19 chr12 43669893 43670817 -77586713 - Lx3C LINE L1 -948 6028 5094 2 918 880 243 226 0 chr12 43670820 43671109 -77586421 - L1_Mur3 LINE L1 -603 5277 4940 2 918 216 0 0 0 chr12 43671109 43671133 -77586397 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2 918 880 243 226 0 chr12 43671133 43671205 -77586325 - L1_Mur3 LINE L1 -941 4939 4835 2 918 227 340 37 70 chr12 43671216 43671431 -77586099 + ORR1A4 LTR MaLR 114 321 -8 2 918 1026 266 114 30 chr12 43671672 43672005 -77585525 + ORR1D2 LTR MaLR 10 370 0 2 918 253 254 155 46 chr12 43672631 43672825 -77584705 + B3 SINE B2 2 216 0 2 918 235 310 80 0 chr12 43673724 43673824 -77583706 - MIRb SINE MIR 0 268 161 2 918 732 127 0 8 chr12 43674251 43674370 -77583160 - Lx3A LINE L1 -272 6709 6592 2 918 8512 113 31 13 chr12 43674402 43676177 -77581353 - Lx3A LINE L1 -3 6978 5199 2 918 210 71 0 0 chr12 43676177 43676205 -77581325 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2 918 7518 90 42 1 chr12 43676205 43676621 -77580909 - Lx3A LINE L1 -688 5198 4762 2 918 1816 174 137 30 chr12 43676608 43677075 -77580455 - Lx3A LINE L1 -6465 519 3 2 918 231 36 0 0 chr12 43677358 43677386 -77580144 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 918 288 77 0 0 chr12 43677749 43677788 -77579742 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 918 366 23 0 0 chr12 43677788 43677831 -77579699 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 918 21 36 0 0 chr12 43677895 43677923 -77579607 + AT_rich Low_complexity Low_complexity 1 28 0 2 918 457 301 28 14 chr12 43677925 43678070 -77579460 - B1_Mur1 SINE Alu 0 149 3 2 918 1052 198 10 10 chr12 43678643 43678847 -77578683 + URR1B DNA MER1_type 7 210 -15 2 918 5717 63 14 0 chr12 43679099 43679832 -77577698 - L1Md_F2 LINE L1 -12 6570 5828 2 918 23 0 0 0 chr12 43679895 43679918 -77577612 + AT_rich Low_complexity Low_complexity 1 23 0 2 918 2580 119 27 2 chr12 43680074 43680471 -77577059 + RMER16 LTR ERVK 64 470 -63 2 918 1289 73 0 6 chr12 43680471 43680650 -77576880 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 2 918 866 51 25 0 chr12 43680663 43680781 -77576749 + (TTCCC)n Simple_repeat Simple_repeat 5 125 0 2 918 23 33 0 0 chr12 43680996 43681026 -77576504 + AT_rich Low_complexity Low_complexity 1 30 0 2 918 288 0 0 0 chr12 43681146 43681178 -77576352 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 918 23 0 0 0 chr12 43681945 43681968 -77575562 + AT_rich Low_complexity Low_complexity 1 23 0 2 918 252 324 37 21 chr12 43682015 43682204 -77575326 - L1M5 LINE L1 -576 5603 5412 2 918 786 253 55 21 chr12 43682366 43682604 -77574926 - MTD LTR MaLR 0 419 174 2 918 2250 231 90 9 chr12 43682636 43683183 -77574347 - Lx9 LINE L1 -345 7299 6709 2 918 423 384 102 3 chr12 43683207 43683312 -77574218 - Lx8 LINE L1 -12 7461 7330 2 918 399 41 0 0 chr12 43683312 43683361 -77574169 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 918 423 384 102 3 chr12 43683361 43683540 -77573990 - Lx8 LINE L1 -144 7329 7149 2 918 22 70 0 0 chr12 43683575 43683618 -77573912 + AT_rich Low_complexity Low_complexity 1 43 0 2 918 4738 282 57 11 chr12 43683870 43685680 -77571850 - Lx7 LINE L1 -497 7199 5303 2 918 3423 28 2 0 chr12 43685687 43686082 -77571448 - MTA_Mm LTR MaLR 0 396 1 2 918 1526 71 0 0 chr12 43686082 43686280 -77571250 + MTA_Mm LTR MaLR 199 396 0 2 918 1150 222 39 58 chr12 43686287 43686651 -77570879 - Lx7 LINE L1 -585 5295 4939 2 918 320 128 12 37 chr12 43687111 43687192 -77570338 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 918 27 87 0 0 chr12 43688349 43688418 -77569112 + AT_rich Low_complexity Low_complexity 1 69 0 2 918 588 65 0 0 chr12 43688421 43688498 -77569032 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 918 691 146 31 123 chr12 43690604 43690799 -77566731 + Lx3B LINE L1 6796 6972 -1 2 918 263 219 36 24 chr12 43690860 43690944 -77566586 + CT-rich Low_complexity Low_complexity 1 85 0 2 918 492 288 128 29 chr12 43691390 43691562 -77565968 + B3A SINE B2 9 197 -1 2 918 199 122 20 20 chr12 43691948 43691998 -77565532 + T-rich Low_complexity Low_complexity 4 53 0 2 918 999 110 0 27 chr12 43692004 43692153 -77565377 - B1_Mm SINE Alu 0 147 3 2 918 7826 54 3 2 chr12 43692606 43694030 -77563500 - L1Md_F2 LINE L1 -1 6581 5159 2 918 33789 70 23 1 chr12 43694028 43700027 -77557503 - L1Md_T LINE L1 -1 6581 441 2 918 24 32 0 0 chr12 43700598 43700629 -77556901 + AT_rich Low_complexity Low_complexity 1 31 0 2 918 182 91 30 0 chr12 43700981 43701014 -77556516 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 918 447 359 8 0 chr12 43701019 43701147 -77556383 - ID_B1 SINE B4 -8 216 88 2 918 543 31 0 0 chr12 43701268 43701333 -77556197 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2 918 6488 155 74 16 chr12 43701333 43702534 -77554996 - Lx4A LINE L1 -6 7052 5782 2 918 13009 140 47 78 chr12 43702534 43705414 -77552116 - L1_Mur2 LINE L1 -1512 4365 1578 2 918 5794 89 48 3 chr12 43705412 43706292 -77551238 - MusHAL1 LINE L1 0 2712 1794 2 918 4035 164 28 37 chr12 43706296 43707020 -77550510 - L1VL4 LINE L1 -5569 733 17 2 918 1921 144 188 47 chr12 43707035 43707493 -77550037 - L1_Mur2 LINE L1 -4284 1593 1080 2 918 3272 38 8 0 chr12 43707493 43707886 -77549644 + MTA_Mm LTR MaLR 1 396 0 2 918 1813 236 23 18 chr12 43707886 43708373 -77549157 - L1_Mur2 LINE L1 -6007 1079 401 2 918 2123 113 53 9 chr12 43708395 43708734 -77548796 + L1_Mus3 LINE L1 6275 6628 -10 2 918 841 291 16 21 chr12 43708736 43708978 -77548552 - Lx6 LINE L1 -27 7433 7193 2 918 348 138 0 0 chr12 43709550 43709615 -77547915 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 2 918 25 31 0 0 chr12 43709887 43709919 -77547611 + AT_rich Low_complexity Low_complexity 1 32 0 2 918 10474 116 20 22 chr12 43709933 43711534 -77545996 + L1VL4 LINE L1 1 1708 -1851 2 918 1484 243 30 100 chr12 43711534 43712133 -77545397 - RLTR31_Mm LTR ERVK -2 559 3 2 918 10474 87 17 8 chr12 43712133 43712852 -77544678 + L1VL4 LINE L1 1709 2429 -1130 2 918 349 155 0 27 chr12 43712883 43712956 -77544574 + Lx LINE L1 5227 5297 -589 2 918 1044 45 0 0 chr12 43712956 43713089 -77544441 + B1_Mm SINE Alu 15 147 0 2 918 6397 152 10 9 chr12 43713105 43714455 -77543075 + Lx LINE L1 5288 6646 -8 2 918 1115 228 95 14 chr12 43715791 43716138 -77541392 + Lx9 LINE L1 7248 7622 -22 2 918 729 9 55 0 chr12 43716435 43716545 -77540985 + (GA)n Simple_repeat Simple_repeat 1 116 0 2 918 234 194 0 0 chr12 43716792 43716854 -77540676 + (CATG)n Simple_repeat Simple_repeat 2 63 0 2 918 262 236 0 65 chr12 43717961 43718038 -77539492 - Lx9 LINE L1 -188 7456 7385 2 918 552 116 0 0 chr12 43718074 43718169 -77539361 + (TC)n Simple_repeat Simple_repeat 2 96 0 2 918 387 0 0 0 chr12 43718257 43718300 -77539230 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 918 1686 312 92 18 chr12 43718428 43719169 -77538361 - Lx9 LINE L1 -427 7217 6422 2 918 21 0 0 0 chr12 43719316 43719337 -77538193 + AT_rich Low_complexity Low_complexity 1 21 0 2 918 21 0 0 0 chr12 43720790 43720811 -77536719 + AT_rich Low_complexity Low_complexity 1 21 0 2 918 581 311 76 41 chr12 43722543 43722885 -77534645 - Lx9 LINE L1 -220 7424 7071 3 918 315 0 0 0 chr12 43722939 43722974 -77534556 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 918 525 44 0 0 chr12 43722974 43723041 -77534489 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 918 783 107 156 7 chr12 43723207 43723348 -77534182 + B2_Mm2 SINE B2 33 194 -1 3 918 37858 30 0 0 chr12 43724384 43731011 -77526519 - L1Md_T LINE L1 0 6585 1 3 918 489 256 64 21 chr12 43731015 43731155 -77526375 - B1_Mur4 SINE Alu 0 150 5 3 918 315 64 0 3 chr12 43732025 43732076 -77525454 - L1_Mus3 LINE L1 -284 6298 6242 3 918 2412 108 6 3 chr12 43732076 43732429 -77525101 + L1_Mus3 LINE L1 6284 6637 -1 3 918 32 43 0 0 chr12 43732705 43732751 -77524779 + AT_rich Low_complexity Low_complexity 1 46 0 3 918 489 230 95 16 chr12 43732994 43733184 -77524346 + Lx9 LINE L1 7433 7637 -7 3 918 505 14 43 0 chr12 43733185 43733254 -77524276 + (GGGAA)n Simple_repeat Simple_repeat 4 75 0 3 918 181 322 34 0 chr12 43733428 43733487 -77524043 + L2c LINE L2 3280 3340 -47 3 918 222 62 0 0 chr12 43733612 43733644 -77523886 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 3 918 23 33 0 0 chr12 43734284 43734314 -77523216 + AT_rich Low_complexity Low_complexity 1 30 0 3 918 30 45 0 0 chr12 43734393 43734437 -77523093 + AT_rich Low_complexity Low_complexity 1 44 0 3 918 1409 75 16 0 chr12 43736648 43736835 -77520695 - B2_Mm2 SINE B2 -5 190 1 3 918 1622 138 3 17 chr12 43736885 43737172 -77520358 - Lx LINE L1 -5 6649 6367 3 918 237 108 0 0 chr12 43738900 43738937 -77518593 + (TAA)n Simple_repeat Simple_repeat 3 39 0 3 918 21 0 0 0 chr12 43739236 43739257 -77518273 + AT_rich Low_complexity Low_complexity 1 21 0 3 918 442 342 70 46 chr12 43739265 43739593 -77517937 - L1MB5 LINE L1 -16 6158 5823 3 918 319 262 12 59 chr12 43739602 43739687 -77517843 - HAL1-3A_ME LINE L1 -804 2054 1974 3 918 594 289 110 44 chr12 43739754 43740474 -77517056 - L1MB5 LINE L1 -462 5722 4948 3 918 1398 316 43 2 chr12 43740471 43740941 -77516589 + Lx8 LINE L1 6812 7300 -173 3 918 23 0 0 0 chr12 43741075 43741098 -77516432 + AT_rich Low_complexity Low_complexity 1 23 0 3 918 351 259 26 9 chr12 43741105 43741218 -77516312 + L1_Rod LINE L1 5441 5555 -292 3 918 413 333 91 7 chr12 43741219 43741373 -77516157 + B3A SINE B2 2 168 -30 3 918 282 56 0 0 chr12 43741393 43741429 -77516101 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 918 385 163 16 16 chr12 43741436 43741561 -77515969 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 3 918 739 296 11 23 chr12 43741587 43741930 -77515600 + Lx7 LINE L1 5594 5927 -373 3 918 1378 102 9 9 chr12 43742684 43742901 -77514629 + L1_Mus3 LINE L1 6417 6633 -5 3 918 237 318 45 45 chr12 43743396 43743508 -77514022 - MTE2a LTR MaLR -267 112 1 3 918 372 43 0 0 chr12 43744417 43744463 -77513067 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 918 861 306 104 30 chr12 43744559 43744896 -77512634 + ORR1D2 LTR MaLR 9 370 0 3 918 321 320 10 0 chr12 43745236 43745333 -77512197 + MER82 DNA MER2_type 1 98 -555 3 918 6524 109 50 7 chr12 43745424 43746899 -77510631 + L1_Mus3 LINE L1 5093 6630 -8 3 918 449 323 104 78 chr12 43746928 43747466 -77510064 + Lx8 LINE L1 6918 7469 -4 3 918 342 0 0 0 chr12 43747831 43747869 -77509661 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 918 358 65 16 16 chr12 43748385 43748448 -77509082 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 3 918 2229 81 45 6 chr12 43748448 43748759 -77508771 - L1Md_F2 LINE L1 -40 6542 6220 3 918 3293 125 35 7 chr12 43748760 43749298 -77508232 - Lx LINE L1 -12 6642 6090 3 918 227 387 54 25 chr12 43749345 43749549 -77507981 + LTR16D1 LTR ERVL 466 675 0 3 918 1125 50 0 21 chr12 43750577 43750720 -77506810 - B1_Mus1 SINE Alu -6 142 3 3 918 3784 242 36 58 chr12 43750919 43751938 -77505592 - Lx7 LINE L1 -956 6740 5744 3 918 2337 247 11 24 chr12 43751938 43752486 -77505044 - RLTR20A LTR ERVK 0 541 1 3 918 2406 194 20 98 chr12 43752486 43753130 -77504400 - Lx7 LINE L1 -136 5744 5151 3 918 975 284 68 19 chr12 43753706 43754015 -77503515 + ORR1D2 LTR MaLR 46 369 -1 3 918 211 254 17 0 chr12 43754185 43754244 -77503286 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 918 26 82 0 0 chr12 43754262 43754323 -77503207 + AT_rich Low_complexity Low_complexity 1 61 0 3 918 236 310 44 0 chr12 43756162 43756275 -77501255 - L1M2 LINE L1 -455 5842 5725 3 918 501 135 27 9 chr12 43756285 43756397 -77501133 + (TATG)n Simple_repeat Simple_repeat 3 116 0 3 918 401 314 51 6 chr12 43756399 43756575 -77500955 - L1M2 LINE L1 -714 5586 5403 3 918 296 286 0 23 chr12 43757054 43757140 -77500390 + L1MCc LINE L1 803 886 -5537 3 918 210 71 0 0 chr12 43757935 43757963 -77499567 + (ATG)n Simple_repeat Simple_repeat 2 29 0 3 918 21 0 0 0 chr12 43758205 43758226 -77499304 + AT_rich Low_complexity Low_complexity 1 21 0 3 918 841 252 57 175 chr12 43758234 43758334 -77499196 - Lx7 LINE L1 -43 7653 7551 3 918 180 0 0 0 chr12 43758334 43758354 -77499176 + (TAA)n Simple_repeat Simple_repeat 3 22 0 3 918 841 252 57 175 chr12 43758354 43758670 -77498860 - Lx7 LINE L1 -146 7550 7291 3 918 493 98 12 0 chr12 43758670 43758773 -77498757 - L1_Mus3 LINE L1 0 6638 6541 3 918 841 252 57 175 chr12 43758773 43758863 -77498667 - Lx7 LINE L1 -406 7290 7206 3 918 354 207 46 0 chr12 43759023 43759110 -77498420 + L1MA5 LINE L1 6209 6299 -1 3 918 21 36 0 0 chr12 43759131 43759159 -77498371 + AT_rich Low_complexity Low_complexity 1 28 0 3 918 246 309 0 100 chr12 43759361 43759451 -77498079 - MLT1A1 LTR MaLR -343 267 187 3 918 234 0 0 0 chr12 43760642 43760668 -77496862 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 918 565 293 0 0 chr12 43760992 43761115 -77496415 + B3 SINE B2 26 148 -68 3 918 3289 117 42 2 chr12 43761115 43761636 -77495894 + L1_Mus3 LINE L1 6096 6637 -1 3 918 277 262 97 55 chr12 43761750 43761891 -77495639 - MLT1A1 LTR MaLR -181 184 38 3 918 2990 126 29 8 chr12 43762364 43762846 -77494684 + Lx LINE L1 6157 6648 -6 3 918 794 79 6 176 chr12 43764421 43764591 -77492939 - L1_Mus4 LINE L1 -858 5778 5638 3 918 4956 166 24 3 chr12 43764591 43765452 -77492078 + Lx LINE L1 5770 6648 -6 3 918 280 350 146 0 chr12 43765466 43765672 -77491858 + MER31A LTR ERV1 95 330 -155 3 918 536 303 94 31 chr12 43765975 43766295 -77491235 - RLTR15 LTR ERVK -19 340 1 3 918 988 50 8 0 chr12 43767124 43767243 -77490287 - L1Md_F2 LINE L1 -394 6188 6069 3 918 3259 33 0 12 chr12 43767246 43767648 -77489882 + L1Md_F2 LINE L1 6178 6574 -8 3 918 35321 36 0 2 chr12 43767771 43773197 -77484333 + L1Md_Gf LINE L1 66 5589 -297 3 918 8893 9 0 0 chr12 43773197 43774193 -77483337 + L1Md_T LINE L1 5587 6582 0 3 918 35321 42 0 2 chr12 43774193 43774212 -77483318 + L1Md_Gf LINE L1 5590 5600 -286 3 918 210 105 0 0 chr12 43774218 43774256 -77483274 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 3 918 438 53 0 0 chr12 43774379 43774436 -77483094 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 918 239 87 0 42 chr12 43774799 43774847 -77482683 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 918 842 110 79 0 chr12 43774857 43774984 -77482546 - B1_Mus2 SINE Alu -9 138 2 3 918 363 288 48 41 chr12 43774984 43775028 -77482502 - MT2B LTR ERVL -438 163 119 3 918 636 269 75 64 chr12 43775033 43775315 -77482215 - RLTR20D LTR ERVK -283 285 1 3 918 627 99 0 0 chr12 43775459 43775560 -77481970 + (TTTTG)n Simple_repeat Simple_repeat 2 102 0 3 918 300 296 64 57 chr12 43777319 43777459 -77480071 - L2a LINE L2 -14 3412 3272 3 919 24 32 0 0 chr12 43778480 43778511 -77479019 + AT_rich Low_complexity Low_complexity 1 31 0 3 919 23 0 0 0 chr12 43778621 43778644 -77478886 + AT_rich Low_complexity Low_complexity 1 23 0 3 919 350 317 61 36 chr12 43778966 43779162 -77478368 - MER2 DNA MER2_type -59 286 86 3 919 1376 270 51 15 chr12 43779312 43779823 -77477707 + Lx5 LINE L1 6478 7054 -4 3 919 391 208 39 19 chr12 43779866 43779969 -77477561 - MER2 DNA MER2_type -111 234 130 3 919 387 105 0 0 chr12 43780232 43780289 -77477241 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 919 373 238 37 60 chr12 43780862 43780996 -77476534 + B3 SINE B2 86 216 0 3 919 27 49 0 0 chr12 43781012 43781053 -77476477 + AT_rich Low_complexity Low_complexity 1 41 0 3 919 384 22 0 0 chr12 43781917 43781962 -77475568 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 919 265 176 168 42 chr12 43782261 43782380 -77475150 - L1M3c LINE L1 -4732 1409 1276 3 919 19140 185 53 59 chr12 43782907 43785031 -77472499 + Lx4B LINE L1 861 2943 -2934 3 919 480 190 65 32 chr12 43785031 43785216 -77472314 + RMER17C LTR ERVK 85 275 -135 3 919 19140 185 53 59 chr12 43785216 43785977 -77471553 + Lx4B LINE L1 2944 3691 -2186 3 919 261 0 0 0 chr12 43785977 43786006 -77471524 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3 919 19140 179 57 42 chr12 43786006 43789003 -77468527 + Lx4B LINE L1 3692 6941 -117 3 919 15351 16 0 1 chr12 43789002 43790778 -77466752 + L1Md_T LINE L1 3812 5586 -297 3 919 8014 54 0 0 chr12 43790778 43791774 -77465756 + L1Md_T LINE L1 5587 6582 0 3 919 423 0 0 0 chr12 43792128 43792175 -77465355 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 919 564 53 0 0 chr12 43792719 43792795 -77464735 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 919 1882 170 207 58 chr12 43793183 43793782 -77463748 + RMER6C LTR ERVK 1 688 -2 3 919 194 62 0 30 chr12 43793785 43793818 -77463712 + (CAT)n Simple_repeat Simple_repeat 3 34 0 3 919 1447 166 11 23 chr12 43793923 43794188 -77463342 - ORR1A1 LTR MaLR -81 265 4 3 919 301 184 21 0 chr12 43794512 43794576 -77462954 - ORR1A3 LTR MaLR -3 371 256 3 919 245 275 0 0 chr12 43794643 43794712 -77462818 + A-rich Low_complexity Low_complexity 1 69 0 3 919 21 0 0 0 chr12 43795050 43795071 -77462459 + AT_rich Low_complexity Low_complexity 1 21 0 3 919 1112 69 6 12 chr12 43795099 43795260 -77462270 + L1_Mus1 LINE L1 6408 6567 0 3 919 450 0 0 0 chr12 43795540 43795590 -77461940 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 919 405 306 113 26 chr12 43795590 43795855 -77461675 - ERVL-B4-int LTR ERVL -1150 4564 4277 3 919 891 346 69 47 chr12 43795979 43796722 -77460808 - ERVL-B4-int LTR ERVL -3426 2288 1531 3 919 2907 50 11 0 chr12 43796722 43797081 -77460449 + L1Md_F2 LINE L1 6208 6570 -12 4 919 891 346 69 47 chr12 43797081 43797119 -77460411 - ERVL-B4-int LTR ERVL -4184 1530 1491 3 919 251 196 0 0 chr12 43797506 43797562 -77459968 - ERVL-B4-int LTR ERVL -4712 1002 947 3 919 1632 234 24 26 chr12 43797587 43798009 -77459521 - MTC LTR MaLR 0 421 1 4 919 239 217 66 16 chr12 43798011 43798072 -77459458 - MTC-int LTR MaLR -2 1256 1193 4 919 237 83 0 0 chr12 43798078 43798114 -77459416 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 919 1145 62 0 14 chr12 43798114 43798261 -77459269 - B1_Mus2 SINE Alu -1 146 2 4 919 2156 199 184 15 chr12 43798261 43798782 -77458748 - MTC-int LTR MaLR -48 1210 602 4 919 692 232 58 33 chr12 43798903 43799226 -77458304 + ORR1C2 LTR MaLR 3 384 0 4 919 1057 95 0 39 chr12 43799671 43799824 -77457706 + B1_Mm SINE Alu 1 147 0 4 919 714 305 88 58 chr12 43799847 43800212 -77457318 + Tigger1 DNA MER2_type 755 1130 -1288 4 919 267 219 22 99 chr12 43800303 43800394 -77457136 + MT2B LTR ERVL 157 240 -361 4 919 231 217 153 42 chr12 43800333 43800405 -77457125 + B1_Mus2 SINE Alu 19 98 -49 4 919 1386 211 46 26 chr12 43800405 43800666 -77456864 + RMER6C LTR ERVK 338 607 -83 4 919 423 0 0 0 chr12 43800666 43800713 -77456817 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 919 1386 211 46 26 chr12 43800713 43800797 -77456733 + RMER6C LTR ERVK 608 690 0 4 919 2663 50 0 6 chr12 43801221 43801561 -77455969 + L1Md_F2 LINE L1 6245 6582 0 4 919 13512 207 42 13 chr12 43803039 43806365 -77451165 + L1_Mur3 LINE L1 1725 5148 -732 4 919 3133 272 46 50 chr12 43806350 43806938 -77450592 + Lx7 LINE L1 6426 6999 -697 4 919 4556 35 11 2 chr12 43806938 43807490 -77450040 - L1Md_F3 LINE L1 -14 6570 6014 4 919 3133 272 46 50 chr12 43807490 43807952 -77449578 + Lx7 LINE L1 7000 7472 -224 4 919 504 92 34 85 chr12 43807998 43808175 -77449355 + CT-rich Low_complexity Low_complexity 2 169 0 4 919 327 306 157 0 chr12 43808178 43808312 -77449218 - HAL1-3A_ME LINE L1 -419 2439 2285 4 919 499 153 34 27 chr12 43808314 43808462 -77449068 + CT-rich Low_complexity Low_complexity 1 149 0 4 919 363 293 38 53 chr12 43808504 43808713 -77448817 + Lx7 LINE L1 7475 7680 -16 4 919 21 95 0 0 chr12 43808713 43808776 -77448754 + AT_rich Low_complexity Low_complexity 1 63 0 4 919 44 20 0 0 chr12 43808896 43808947 -77448583 + AT_rich Low_complexity Low_complexity 1 51 0 4 919 3213 301 52 73 chr12 43809247 43809798 -77447732 - Lx5 LINE L1 -64 6986 6446 4 919 978 9 0 0 chr12 43809798 43809909 -77447621 + (TTC)n Simple_repeat Simple_repeat 1 111 0 4 919 447 19 0 0 chr12 43809911 43809963 -77447567 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 919 3529 262 28 73 chr12 43809963 43811345 -77446185 - Lx5 LINE L1 -605 6445 5069 4 919 3385 41 2 14 chr12 43811345 43811767 -77445763 - L1Md_F3 LINE L1 0 6584 6168 4 919 3529 234 12 73 chr12 43811767 43811983 -77445547 - Lx5 LINE L1 -812 5068 4918 4 919 2885 210 68 90 chr12 43811987 43812990 -77444540 - Lx5 LINE L1 -3228 2649 1669 4 919 7075 79 0 4 chr12 43812997 43813938 -77443592 - L1_Mus2 LINE L1 -1 6565 5629 4 919 1154 247 57 14 chr12 43813937 43814288 -77443242 + Lx5 LINE L1 6455 6886 -574 4 919 2851 164 62 61 chr12 43814428 43815117 -77442413 + RMER6C LTR ERVK 1 690 0 4 919 548 246 112 29 chr12 43815483 43815759 -77441771 + Lx9 LINE L1 7345 7643 -1 4 919 375 301 107 42 chr12 43815820 43816129 -77441401 + L1_Mur3 LINE L1 5431 5790 -90 4 919 459 35 0 0 chr12 43816177 43816234 -77441296 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 919 502 319 40 85 chr12 43816239 43816438 -77441092 + B3A SINE B2 8 197 -1 4 919 364 276 95 24 chr12 43816718 43816844 -77440686 - ID_B1 SINE B4 -3 221 87 4 919 330 357 28 52 chr12 43817825 43817953 -77439577 - Lx8 LINE L1 -390 7083 6960 4 919 2118 110 55 0 chr12 43817953 43818263 -77439267 + ORR1A2 LTR MaLR 1 327 0 4 919 330 357 28 52 chr12 43818263 43818382 -77439148 - Lx8 LINE L1 -514 6959 6842 4 919 233 238 16 0 chr12 43818381 43818444 -77439086 - L1_Mur3 LINE L1 -737 5143 5080 4 919 1535 254 66 6 chr12 43818461 43818959 -77438571 + L1_Mur3 LINE L1 4449 4976 -904 4 919 625 314 22 9 chr12 43818958 43819186 -77438344 - Lx6 LINE L1 -708 6752 6522 4 919 1087 203 27 50 chr12 43819187 43819446 -77438084 + ORR1A4 LTR MaLR 1 253 -76 4 919 246 269 0 0 chr12 43819446 43819498 -77438032 - Lx5 LINE L1 -759 6291 6240 4 919 1090 384 31 4 chr12 43819502 43819981 -77437549 + Lx5 LINE L1 6513 7004 -46 4 919 354 107 0 0 chr12 43820762 43820818 -77436712 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 919 37 0 0 0 chr12 43820930 43820967 -77436563 + AT_rich Low_complexity Low_complexity 1 37 0 4 919 878 257 19 125 chr12 43821014 43821444 -77436086 - ORR1C2 LTR MaLR -17 350 1 4 919 561 42 0 0 chr12 43821993 43822065 -77435465 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 919 1269 298 68 31 chr12 43822131 43822806 -77434724 - L1MA6 LINE L1 0 6300 5601 4 919 459 299 98 35 chr12 43823044 43823390 -77434140 - L1MA7 LINE L1 -12 6279 5912 4 919 2622 93 22 3 chr12 43823447 43823813 -77433717 + L1_Mus3 LINE L1 6259 6631 -7 4 919 692 259 87 12 chr12 43823949 43824250 -77433280 - ORR1D1 LTR MaLR 0 374 10 4 919 257 277 24 104 chr12 43824510 43824635 -77432895 + Charlie7a DNA MER1_type 31 145 -127 4 919 331 265 172 18 chr12 43825796 43825965 -77431565 + Lx8 LINE L1 7269 7463 -10 4 919 270 0 0 0 chr12 43826084 43826114 -77431416 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 919 1783 185 47 94 chr12 43826367 43826880 -77430650 - RMER6C LTR ERVK -3 687 199 4 919 5262 141 44 92 chr12 43826903 43826914 -77430616 - Lx3_Mus LINE L1 -14 6995 6987 4 919 216 0 0 0 chr12 43826914 43826938 -77430592 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 919 5262 141 44 92 chr12 43826938 43828038 -77429492 - Lx3_Mus LINE L1 -23 6986 5937 4 919 531 189 196 8 chr12 43828038 43828171 -77429359 - RMER6C LTR ERVK -532 158 1 4 919 23 0 0 0 chr12 43828785 43828808 -77428722 + AT_rich Low_complexity Low_complexity 1 23 0 4 919 1700 50 14 14 chr12 43829053 43829266 -77428264 + L1_Mm LINE L1 5371 5586 -297 4 919 7251 77 13 4 chr12 43829266 43830250 -77427280 + L1Md_F2 LINE L1 5587 6579 -3 4 919 235 0 0 54 chr12 43830325 43830362 -77427168 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 919 967 109 7 0 chr12 43830362 43830500 -77427030 - B1_Mus1 SINE Alu -8 140 2 4 919 978 134 99 6 chr12 43830601 43830773 -77426757 - B2_Mm2 SINE B2 -7 188 1 4 919 27 29 0 0 chr12 43830807 43830841 -77426689 + AT_rich Low_complexity Low_complexity 1 34 0 4 919 521 276 40 129 chr12 43831110 43831335 -77426195 + B3 SINE B2 2 206 -10 4 919 26 0 0 0 chr12 43831344 43831370 -77426160 + AT_rich Low_complexity Low_complexity 1 26 0 4 919 5327 43 1 5 chr12 43831621 43832274 -77425256 + L1Md_F3 LINE L1 5920 6570 -14 4 919 392 0 21 0 chr12 43832274 43832322 -77425208 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 919 239 294 161 40 chr12 43832516 43832863 -77424667 + L1M2 LINE L1 5414 5802 -510 4 919 868 286 41 16 chr12 43832863 43833108 -77424422 + MTE2a LTR MaLR 12 262 -117 4 919 3286 153 0 11 chr12 43833224 43833401 -77424129 + Lx3B LINE L1 6379 6551 -422 4 919 4249 63 3 14 chr12 43833401 43833965 -77423565 + L1Md_F2 LINE L1 6025 6582 0 4 919 3286 153 0 11 chr12 43833965 43834308 -77423222 + Lx3B LINE L1 6552 6893 -80 4 919 224 137 20 0 chr12 43834467 43834518 -77423012 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 919 330 240 94 65 chr12 43834605 43834743 -77422787 + L1MA10 LINE L1 6190 6331 -3 4 919 784 321 116 20 chr12 43834760 43835449 -77422081 + L1MD1 LINE L1 5310 6064 -178 4 919 408 303 23 0 chr12 43835603 43835735 -77421795 - B1F SINE Alu -10 139 5 4 919 22 0 0 0 chr12 43835997 43836019 -77421511 + AT_rich Low_complexity Low_complexity 1 22 0 4 919 2083 191 58 5 chr12 43836032 43836432 -77421098 + MTC LTR MaLR 1 421 0 4 919 262 285 124 28 chr12 43836708 43836885 -77420645 + L1ME3B LINE L1 5813 6006 -234 4 919 35 0 0 0 chr12 43837786 43837821 -77419709 + AT_rich Low_complexity Low_complexity 1 35 0 4 919 1149 54 0 39 chr12 43837821 43837974 -77419556 - B1_Mm SINE Alu 0 147 1 4 919 1112 79 5 0 chr12 43838684 43838898 -77418632 + (TCTA)n Simple_repeat Simple_repeat 1 215 0 4 919 264 401 29 0 chr12 43839004 43839141 -77418389 + L2 LINE L2 134 274 -3145 4 919 187 407 27 20 chr12 43839217 43839365 -77418165 + L2a LINE L2 3278 3426 0 4 919 37878 30 1 0 chr12 43840305 43847167 -77410363 - L1Md_T LINE L1 0 6585 1 4 919 21 36 0 0 chr12 43847219 43847247 -77410283 + AT_rich Low_complexity Low_complexity 1 28 0 4 919 2970 183 14 45 chr12 43848972 43849566 -77407964 - RMER15 LTR ERVL 0 575 1 4 919 984 260 65 11 chr12 43850117 43850378 -77407152 - Lx5 LINE L1 -54 7406 7132 4 919 432 0 0 0 chr12 43850497 43850545 -77406985 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 919 1668 297 54 59 chr12 43850553 43850707 -77406823 - Lx5 LINE L1 -598 6452 6372 4 919 4467 70 2 16 chr12 43850707 43851321 -77406209 - L1Md_F2 LINE L1 -10 6572 5968 4 919 1668 288 81 40 chr12 43851321 43851852 -77405678 - Lx5 LINE L1 -679 6371 5798 4 919 588 214 0 0 chr12 43851852 43851964 -77405566 + B3 SINE B2 12 123 -93 4 919 21 0 0 0 chr12 43852225 43852246 -77405284 + AT_rich Low_complexity Low_complexity 1 21 0 4 919 3648 133 92 28 chr12 43852756 43853429 -77404101 + Lx LINE L1 5938 6653 -1 4 919 241 262 33 0 chr12 43853438 43853499 -77404031 - Lx6 LINE L1 -421 7039 6977 4 919 564 53 0 0 chr12 43853559 43853635 -77403895 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 919 185 94 31 0 chr12 43853635 43853667 -77403863 + (TCCCC)n Simple_repeat Simple_repeat 2 34 0 4 919 357 93 0 0 chr12 43853667 43853721 -77403809 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 919 210 156 0 0 chr12 43853724 43853769 -77403761 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 919 391 62 0 12 chr12 43853784 43853841 -77403689 - L1_Mm LINE L1 -664 5492 5411 4 919 1394 268 24 35 chr12 43853855 43854277 -77403253 + Lx6 LINE L1 7044 7460 0 4 919 299 221 101 34 chr12 43854616 43854794 -77402736 + L1MA8 LINE L1 6031 6220 -71 4 919 315 0 0 0 chr12 43855965 43856000 -77401530 + (TTA)n Simple_repeat Simple_repeat 3 37 0 4 919 21 0 0 0 chr12 43856071 43856092 -77401438 + AT_rich Low_complexity Low_complexity 1 21 0 4 919 6965 138 23 6 chr12 43856226 43858239 -77399291 + Lx LINE L1 4606 6654 0 5 919 21 0 0 0 chr12 43858442 43858463 -77399067 + AT_rich Low_complexity Low_complexity 1 21 0 5 919 765 239 32 32 chr12 43858486 43858702 -77398828 - B3 SINE B2 0 216 1 5 919 395 162 12 0 chr12 43858726 43858806 -77398724 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 5 919 225 94 0 0 chr12 43859016 43859048 -77398482 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 919 322 372 100 13 chr12 43859081 43859231 -77398299 - RSINE1 SINE B4 -1 164 2 5 919 298 299 57 53 chr12 43859299 43859546 -77397984 + L1_Mur3 LINE L1 4402 4649 -1231 5 919 597 242 0 0 chr12 43859715 43859880 -77397650 + (TA)n Simple_repeat Simple_repeat 1 165 0 5 919 286 304 33 32 chr12 43860082 43860232 -77397298 - L1MA7 LINE L1 -290 6001 5851 5 919 348 291 110 5 chr12 43860239 43860439 -77397091 + L1M3 LINE L1 4545 4765 -1375 5 919 537 198 72 28 chr12 43860440 43860622 -77396908 - B3 SINE B2 0 195 4 5 919 286 317 84 22 chr12 43860670 43860896 -77396634 + L1M3 LINE L1 4791 5030 -1110 5 919 867 265 45 5 chr12 43860904 43861105 -77396425 - B3 SINE B2 -3 213 5 5 919 469 318 10 0 chr12 43861109 43861144 -77396386 + L1M3 LINE L1 5095 5129 -1011 5 919 387 0 0 0 chr12 43861144 43861187 -77396343 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 919 469 318 10 0 chr12 43861187 43861352 -77396178 + L1M3 LINE L1 5130 5296 -844 5 919 251 367 111 59 chr12 43862115 43862558 -77394972 + L2c LINE L2 2917 3382 -5 5 919 1311 168 85 15 chr12 43863697 43863957 -77393573 - ORR1C1 LTR MaLR 0 378 101 5 919 261 0 0 0 chr12 43863987 43864016 -77393514 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 919 352 293 82 23 chr12 43864071 43864242 -77393288 + L1MC LINE L1 3730 3910 -2236 5 919 1089 228 72 19 chr12 43865009 43865273 -77392257 - ORR1D2 LTR MaLR 0 370 93 5 919 1506 247 82 22 chr12 43865654 43866125 -77391405 + ORR1D1-int LTR MaLR 937 1760 -203 5 919 756 287 162 3 chr12 43866136 43866433 -77391097 + ORR1D1 LTR MaLR 31 374 0 5 919 302 228 0 12 chr12 43867746 43867826 -77389704 - Lx8 LINE L1 0 7473 7395 5 919 1186 253 72 42 chr12 43867880 43868239 -77389291 + RLTR12A LTR ERVK 1 370 -198 5 919 446 259 9 9 chr12 43868244 43868353 -77389177 + RLTR25B LTR ERVK 201 309 -794 5 919 30906 86 3 2 chr12 43868365 43873543 -77383987 + L1Md_F2 LINE L1 401 5584 -299 5 919 7875 52 6 2 chr12 43873545 43874534 -77382996 + L1Md_F2 LINE L1 5587 6579 -3 5 919 2597 211 119 28 chr12 43874535 43875066 -77382464 + RLTR25B LTR ERVK 295 860 -168 5 919 1086 8 0 0 chr12 43875066 43875189 -77382341 + (GA)n Simple_repeat Simple_repeat 1 123 0 5 919 2597 211 119 28 chr12 43875189 43875330 -77382200 + RLTR25B LTR ERVK 861 1027 -1 5 919 303 259 109 25 chr12 43875332 43875451 -77382079 + RLTR12A LTR ERVK 428 556 -12 5 919 37143 45 3 0 chr12 43876766 43882408 -77375122 - L1Md_T LINE L1 0 6585 828 5 919 2823 86 0 36 chr12 43882412 43882824 -77374706 - L1Md_T LINE L1 -5805 717 321 5 919 231 270 90 51 chr12 43882824 43882902 -77374628 - LTR68 LTR ERV1 -238 502 422 5 919 26635 141 28 17 chr12 43882902 43887805 -77369725 - L1_Mus4 LINE L1 -42 6594 1629 5 919 1534 138 4 29 chr12 43887805 43888082 -77369448 - L1Md_F2 LINE L1 0 6582 6313 5 919 26635 140 75 6 chr12 43888082 43889006 -77368524 - L1_Mus4 LINE L1 -4255 1628 645 5 919 235 300 25 0 chr12 43889003 43889083 -77368447 + Lx5 LINE L1 6341 6422 -628 5 919 909 291 80 13 chr12 43889092 43889474 -77368056 + Lx6 LINE L1 6257 6880 -580 5 919 342 0 0 0 chr12 43889474 43889512 -77368018 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 919 1232 308 18 9 chr12 43889512 43889907 -77367623 + Lx6 LINE L1 6591 7338 -122 5 919 5524 58 1 0 chr12 43889899 43890920 -77366610 - L1Md_F2 LINE L1 -420 6162 5141 5 919 272 91 23 0 chr12 43891272 43891316 -77366214 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 919 26 0 0 0 chr12 43892103 43892129 -77365401 + AT_rich Low_complexity Low_complexity 1 26 0 5 919 413 380 39 52 chr12 43892317 43892550 -77364980 - B4A SINE B4 0 292 63 5 919 456 122 32 16 chr12 43892615 43892740 -77364790 + (TTTG)n Simple_repeat Simple_repeat 2 128 0 5 919 1157 75 0 0 chr12 43892740 43892887 -77364643 - B1_Mm SINE Alu 0 147 1 5 919 661 257 98 144 chr12 43893028 43893550 -77363980 - RLTR12B LTR ERVK -30 498 1 5 919 852 142 147 6 chr12 43893558 43893714 -77363816 - RLTR20A LTR ERVK -2 539 362 5 919 231 213 0 0 chr12 43893712 43893759 -77363771 - RLTR20A LTR ERVK -494 47 1 5 919 386 347 57 0 chr12 43893765 43893889 -77363641 - B4A SINE B4 -161 131 1 5 919 678 84 0 0 chr12 43894084 43894191 -77363339 + (TC)n Simple_repeat Simple_repeat 2 108 0 5 919 272 27 27 0 chr12 43894191 43894227 -77363303 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 919 234 128 0 0 chr12 43896213 43896252 -77361278 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 919 1995 167 3 66 chr12 43896329 43896443 -77361087 + ORR1B1 LTR MaLR 41 150 -244 5 919 522 31 0 0 chr12 43896443 43896507 -77361023 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 919 1995 167 3 66 chr12 43896507 43896770 -77360760 + ORR1B1 LTR MaLR 151 394 0 5 919 1610 211 194 26 chr12 43896805 43897137 -77360393 - RMER15 LTR ERVL 0 575 177 5 919 186 43 0 0 chr12 43897137 43897160 -77360370 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 919 1610 211 194 26 chr12 43897160 43897318 -77360212 - RMER15 LTR ERVL -399 176 4 5 919 1406 136 5 0 chr12 43897410 43897631 -77359899 - Lx3C LINE L1 -99 6877 6656 5 919 261 139 0 0 chr12 43898924 43898967 -77358563 + (T)n Simple_repeat Simple_repeat 1 43 0 5 919 721 147 109 12 chr12 43898979 43899144 -77358386 - Lx3B LINE L1 -4 6969 6789 5 919 223 26 24 49 chr12 43900354 43900395 -77357135 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 5 919 1104 88 0 0 chr12 43900433 43900581 -77356949 - B1_Mus1 SINE Alu 0 148 1 5 919 943 70 7 58 chr12 43900731 43900868 -77356662 + B1_Mus1 SINE Alu 1 130 -18 5 919 696 56 0 0 chr12 43900874 43900963 -77356567 + (GAAA)n Simple_repeat Simple_repeat 1 89 0 5 919 1782 238 50 23 chr12 43901108 43901585 -77355945 - RLTR12B LTR ERVK -30 498 9 5 919 2932 71 2 25 chr12 43901869 43902009 -77355521 + MTA_Mm LTR MaLR 1 138 -258 5 919 1971 161 3 3 chr12 43902009 43902320 -77355210 - RLTR10E LTR ERVK 0 311 1 5 919 2932 71 2 25 chr12 43902320 43902584 -77354946 + MTA_Mm LTR MaLR 139 396 0 5 919 272 137 20 0 chr12 43902668 43902719 -77354811 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 919 208 49 0 68 chr12 43903529 43903573 -77353957 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 5 919 1104 169 18 35 chr12 43903871 43904098 -77353432 + Lx LINE L1 6432 6654 0 5 919 811 261 0 48 chr12 43904160 43904369 -77353161 - B3 SINE B2 -13 203 5 5 919 321 26 0 0 chr12 43905033 43905071 -77352459 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 919 1712 184 118 81 chr12 43905078 43905669 -77351861 - L1_Mur3 LINE L1 -3864 2016 1404 5 919 182 91 30 0 chr12 43906115 43906148 -77351382 + (GTTTG)n Simple_repeat Simple_repeat 5 38 0 5 919 25 51 0 0 chr12 43906683 43906722 -77350808 + AT_rich Low_complexity Low_complexity 1 39 0 5 919 313 330 6 11 chr12 43906945 43907126 -77350404 - L1MA4 LINE L1 -370 5930 5751 5 919 31 44 0 0 chr12 43907615 43907660 -77349870 + AT_rich Low_complexity Low_complexity 1 45 0 5 919 226 350 59 10 chr12 43907858 43907959 -77349571 - PB1D7 SINE Alu -8 112 7 5 919 1758 68 0 0 chr12 43908197 43908419 -77349111 + L1_Mus1 LINE L1 6346 6567 0 5 919 192 97 0 0 chr12 43908779 43908810 -77348720 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 919 502 187 13 0 chr12 43908922 43909072 -77348458 + CT-rich Low_complexity Low_complexity 2 153 0 5 920 229 191 71 0 chr12 43909493 43909535 -77347995 + Tigger9a DNA Tigger 212 256 -476 5 920 296 274 12 0 chr12 43910402 43910486 -77347044 + (TATG)n Simple_repeat Simple_repeat 2 86 0 5 920 270 346 30 64 chr12 43910497 43910793 -77346737 - B4A SINE B4 -6 286 1 5 920 27 0 0 0 chr12 43911486 43911513 -77346017 + AT_rich Low_complexity Low_complexity 1 27 0 5 920 206 226 97 0 chr12 43912328 43912390 -77345140 + L2a LINE L2 3194 3261 -165 5 920 203 265 51 36 chr12 43912393 43912530 -77345000 + (CATATA)n Simple_repeat Simple_repeat 5 143 0 5 920 800 247 33 44 chr12 43913399 43913670 -77343860 - Lx9 LINE L1 -450 7194 6927 5 920 1199 228 51 21 chr12 43913673 43914004 -77343526 - L1_Rod LINE L1 -180 5667 5327 5 920 1185 146 80 54 chr12 43914074 43914350 -77343180 - Lx4B LINE L1 0 7058 6776 5 920 1194 186 138 4 chr12 43914349 43914602 -77342928 + Lx5 LINE L1 6451 6737 -313 5 920 855 225 68 46 chr12 43914599 43914967 -77342563 - L1_Rod LINE L1 -3067 2780 2405 5 920 273 336 24 89 chr12 43915086 43915377 -77342153 + L1_Rod LINE L1 56 327 -6845 5 920 203 308 148 15 chr12 43916398 43916533 -77340997 + MIRb SINE MIR 10 162 -106 5 920 2608 284 94 26 chr12 43916713 43917933 -77339597 - RMER1A Other Other -14 1016 14 5 920 807 126 0 0 chr12 43918253 43918380 -77339150 + (TG)n Simple_repeat Simple_repeat 2 128 0 5 920 262 230 11 22 chr12 43918555 43918644 -77338886 + Lx9 LINE L1 7532 7619 -25 5 920 718 308 68 26 chr12 43918645 43918985 -77338545 - Lx8 LINE L1 -948 6525 6172 5 920 1434 196 155 15 chr12 43919254 43919595 -77337935 + MTC LTR MaLR 3 391 -30 5 920 5638 5 0 0 chr12 43919899 43920523 -77337007 - L1Md_A LINE L1 0 6582 5959 5 920 4503 87 11 35 chr12 43920655 43921322 -77336208 - L1_Mus3 LINE L1 0 6638 5988 5 920 487 76 63 0 chr12 43921324 43921403 -77336127 + L1_Mus3 LINE L1 5914 5997 -569 5 920 303 279 47 35 chr12 43921715 43921886 -77335644 - RLTR14-int LTR ERV1 -254 5063 4891 5 920 1188 209 38 103 chr12 43921974 43922343 -77335187 - RLTR19-int LTR ERVK -1756 4381 4037 5 920 2194 170 12 25 chr12 43922403 43922802 -77334728 + ORR1B1 LTR MaLR 1 394 0 5 920 417 39 0 0 chr12 43922830 43922881 -77334649 + (GGGAGA)n Simple_repeat Simple_repeat 1 51 0 5 920 388 200 41 31 chr12 43922923 43923021 -77334509 - RLTR19-int LTR ERVK -2174 3963 3865 5 920 1013 133 0 28 chr12 43923022 43923200 -77334330 - L1_Mur2 LINE L1 -2008 3869 3697 5 920 2831 153 82 6 chr12 43923211 43923710 -77333820 + Lx4A LINE L1 6522 7058 0 5 920 34141 22 14 20 chr12 43923712 43927628 -77329902 + L1Md_A LINE L1 992 4927 -956 5 920 228 183 46 77 chr12 43927628 43927693 -77329837 - RMER20A LTR ERVK -268 248 186 5 920 34141 22 14 20 chr12 43927693 43928347 -77329183 + L1Md_A LINE L1 4928 5586 -297 5 920 8586 28 0 0 chr12 43928347 43929343 -77328187 + L1Md_A LINE L1 5587 6582 0 5 920 187 322 0 17 chr12 43929518 43929578 -77327952 + L2a LINE L2 3354 3412 -14 6 920 2725 186 9 59 chr12 43929748 43930324 -77327206 + RMER13B LTR ERVK 1 547 -361 6 920 474 304 34 38 chr12 43930306 43930515 -77327015 + RMER13B LTR ERVK 701 908 0 6 920 821 220 7 37 chr12 43930517 43930634 -77326896 - RLTR42-int LTR ERVK -3399 2123 2009 6 920 1160 62 14 0 chr12 43930634 43930780 -77326750 + B1_Mus1 SINE Alu 1 148 0 6 920 821 220 7 37 chr12 43930780 43930931 -77326599 - RLTR42-int LTR ERVK -3514 2008 1863 6 920 399 41 0 0 chr12 43931140 43931189 -77326341 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 6 920 4773 92 35 9 chr12 43931338 43932074 -77325456 - Lx3_Mus LINE L1 -256 6753 5999 6 920 1326 169 33 40 chr12 43932087 43932359 -77325171 + Lx3_Mus LINE L1 6734 7003 -6 6 920 1080 314 8 92 chr12 43932359 43932752 -77324778 - MTC-int LTR MaLR -192 1066 707 6 920 701 204 50 45 chr12 43932775 43932975 -77324555 - RLTR42-int LTR ERVK -4925 1212 1012 6 920 362 271 81 91 chr12 43932985 43933293 -77324237 - RLTR42-int LTR ERVK -3732 1790 1486 6 920 606 249 115 5 chr12 43933313 43933531 -77323999 - RLTR42-int LTR ERVK -4174 1348 1107 6 920 4483 165 81 20 chr12 43934781 43935708 -77321822 - RLTR13C1 LTR ERVK 0 983 1 6 920 275 102 0 0 chr12 43935783 43935842 -77321688 + L1_Mus3 LINE L1 6577 6635 -3 6 920 29 28 0 0 chr12 43936224 43936260 -77321270 + AT_rich Low_complexity Low_complexity 1 36 0 6 920 2661 77 55 3 chr12 43936296 43936657 -77320873 + MTB LTR MaLR 1 382 -18 6 920 5216 38 3 2 chr12 43936657 43937283 -77320247 + L1Md_F2 LINE L1 5956 6582 0 6 920 2661 77 55 3 chr12 43937283 43937301 -77320229 + MTB LTR MaLR 383 400 0 6 920 1235 128 42 108 chr12 43937360 43937646 -77319884 - L1_Mus3 LINE L1 -7 6631 6376 6 920 1993 120 0 0 chr12 43937643 43937952 -77319578 + L1_Mus3 LINE L1 6071 6379 -257 6 920 6036 73 22 23 chr12 43937960 43938835 -77318695 - L1_Mus2 LINE L1 0 6566 5693 6 920 7269 118 37 0 chr12 43938832 43939998 -77317532 + L1_Mus2 LINE L1 4483 5691 -192 6 920 459 0 0 0 chr12 43940030 43940081 -77317449 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 920 438 20 0 0 chr12 43940081 43940131 -77317399 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 920 610 276 8 0 chr12 43940133 43940267 -77317263 - RSINE1 SINE B4 -25 140 6 6 920 718 336 19 19 chr12 43940483 43940698 -77316832 - B3 SINE B2 0 216 2 6 920 22 0 0 0 chr12 43940702 43940724 -77316806 + AT_rich Low_complexity Low_complexity 1 22 0 6 920 1219 183 25 71 chr12 43942005 43942358 -77315172 + RMER17C LTR ERVK 1 337 -73 6 920 433 417 16 35 chr12 43943442 43943755 -77313775 - LTR16A LTR ERVL -140 311 5 6 920 358 277 48 0 chr12 43944092 43944175 -77313355 - RSINE1 SINE B4 -44 121 35 6 920 753 340 103 31 chr12 43944315 43944792 -77312738 - Lx8 LINE L1 -84 7389 6879 6 920 308 216 83 128 chr12 43945257 43945390 -77312140 - RLTR21 LTR ERVK 0 1572 1446 6 920 189 0 0 0 chr12 43945460 43945481 -77312049 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 920 5233 167 69 40 chr12 43945483 43946540 -77310990 - RLTR21 LTR ERVK -481 1091 4 6 920 786 318 97 20 chr12 43946742 43947198 -77310332 - MER45B DNA Tip100 -164 876 386 6 920 587 278 35 56 chr12 43947412 43947610 -77309920 + B3A SINE B2 1 194 -4 6 920 1593 242 44 3 chr12 43948411 43948776 -77308754 - RLTR14 LTR ERV1 0 382 3 6 920 405 0 0 0 chr12 43949167 43949212 -77308318 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 920 212 77 128 0 chr12 43949315 43949354 -77308176 + MIRm SINE MIR 129 172 -104 6 920 348 291 94 0 chr12 43949355 43949472 -77308058 - HERV16-int LTR ERVL -4559 437 310 6 920 495 399 70 35 chr12 43949733 43949990 -77307540 - LTR16A LTR ERVL -8 443 182 6 920 2298 181 47 35 chr12 43949990 43950151 -77307379 - RLTR28 LTR ERVL 0 524 364 6 920 423 0 0 0 chr12 43950151 43950198 -77307332 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 920 2298 181 47 35 chr12 43950198 43950552 -77306978 - RLTR28 LTR ERVL -161 363 3 6 920 495 399 70 35 chr12 43950552 43950663 -77306867 - LTR16A LTR ERVL -270 181 62 6 920 35 0 0 0 chr12 43951165 43951200 -77306330 + AT_rich Low_complexity Low_complexity 1 35 0 6 920 195 42 0 0 chr12 43951322 43951346 -77306184 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 6 920 322 360 95 6 chr12 43951697 43951876 -77305654 - L1M5 LINE L1 -497 5682 5488 6 920 504 325 94 77 chr12 43954096 43954510 -77303020 - LTR55 LTR ERV -125 423 3 6 920 1630 134 88 66 chr12 43955086 43955405 -77302125 - ORR1A4 LTR MaLR -3 326 1 6 920 4091 227 56 168 chr12 43955405 43956956 -77300574 - ORR1A4-int LTR MaLR 0 1963 634 6 920 1893 56 47 16 chr12 43956956 43957211 -77300319 + L1_Mus1 LINE L1 6304 6566 -1 6 920 4091 233 57 162 chr12 43957211 43957655 -77299875 - ORR1A4-int LTR MaLR -1330 633 19 6 920 311 260 24 0 chr12 43958080 43958168 -77299362 + B3 SINE B2 29 121 -74 6 920 783 351 42 0 chr12 43958157 43958396 -77299134 - B4A SINE B4 -42 250 2 6 920 1303 236 86 23 chr12 43958767 43959161 -77298369 + MTD LTR MaLR 1 419 0 6 920 28 48 0 0 chr12 43960014 43960056 -77297474 + AT_rich Low_complexity Low_complexity 1 42 0 6 920 832 267 110 110 chr12 43961023 43961397 -77296133 - MTE2a LTR MaLR -5 374 1 6 920 27 87 0 0 chr12 43962244 43962313 -77295217 + AT_rich Low_complexity Low_complexity 1 69 0 6 920 201 200 20 0 chr12 43962642 43962692 -77294838 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 920 514 93 23 0 chr12 43963181 43963267 -77294263 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 6 920 474 234 6 13 chr12 43963350 43963506 -77294024 + CT-rich Low_complexity Low_complexity 1 155 0 6 920 210 351 68 34 chr12 43964287 43964405 -77293125 - MIRb SINE MIR -142 126 5 6 920 3676 200 35 17 chr12 43964903 43965801 -77291729 - Lx4B LINE L1 -7 7051 6070 6 920 3261 223 27 72 chr12 43965798 43967170 -77290360 - L1_Mur1 LINE L1 -3674 2203 895 6 920 687 69 0 0 chr12 43968300 43968402 -77289128 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 6 920 513 0 0 0 chr12 43968474 43968531 -77288999 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 920 1551 275 109 66 chr12 43968548 43968647 -77288883 + Lx7 LINE L1 6890 6960 -736 6 920 1077 83 14 0 chr12 43968647 43968792 -77288738 - B1_Mm SINE Alu 0 147 1 6 920 1551 275 109 66 chr12 43968792 43969174 -77288356 + Lx7 LINE L1 6961 7364 -332 6 920 315 0 0 0 chr12 43969174 43969209 -77288321 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 920 1551 275 109 66 chr12 43969209 43969481 -77288049 + Lx7 LINE L1 7365 7676 -20 6 920 354 100 0 0 chr12 43969494 43969554 -77287976 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 920 398 283 28 19 chr12 43969564 43969672 -77287858 + Lx7 LINE L1 6573 6681 -1015 6 920 1288 248 114 43 chr12 43969694 43970158 -77287372 + RLTR16 LTR ERVK 9 505 0 6 920 394 315 17 43 chr12 43970564 43970581 -77286949 - B1F2 SINE Alu 0 149 137 6 920 180 77 0 0 chr12 43970581 43970607 -77286923 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6 920 394 315 17 43 chr12 43970607 43970705 -77286825 - B1F2 SINE Alu -13 136 37 6 920 217 257 78 39 chr12 43970850 43970927 -77286603 - MIR SINE MIR -170 92 13 6 920 2197 88 25 21 chr12 43971365 43971691 -77285839 + RLTR10 LTR ERVK 1 327 0 6 920 15659 30 1 1 chr12 43971693 43973566 -77283964 + RLTR10-int LTR ERVK 3 1984 -3 6 920 3245 21 2 42 chr12 43973568 43973972 -77283558 + RLTR10 LTR ERVK 1 388 -2 6 920 434 84 0 262 chr12 43973972 43974117 -77283413 + RLTR10-int LTR ERVK 6 112 -6369 6 920 225 339 0 0 chr12 43974117 43974173 -77283357 + RLTR27 LTR ERVK 220 275 -34 6 920 1467 128 40 60 chr12 43974173 43974837 -77282693 + RLTR10-int LTR ERVK 67 429 -6052 6 920 3545 58 0 19 chr12 43974837 43975298 -77282232 + IAPEz-int LTR ERVK 211 662 -5819 6 920 2238 61 0 0 chr12 43975298 43975576 -77281954 + IAPEz-int LTR ERVK 1359 1636 -4845 6 920 6022 37 14 12 chr12 43975575 43976318 -77281212 + IAPEz-int LTR ERVK 5736 6479 -2 6 920 2228 82 25 21 chr12 43976320 43976646 -77280884 + IAPLTR2b LTR ERVK 1 327 0 6 920 219 103 0 0 chr12 43976658 43976697 -77280833 + (A)n Simple_repeat Simple_repeat 1 39 0 6 920 306 0 0 0 chr12 43976796 43976830 -77280700 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 920 26 0 0 0 chr12 43977767 43977793 -77279737 + AT_rich Low_complexity Low_complexity 1 26 0 6 920 3032 95 7 7 chr12 43978401 43978827 -77278703 + L1_Mus3 LINE L1 6152 6577 -61 6 920 911 267 83 14 chr12 43978858 43979207 -77278323 - MER67C LTR ERV1 0 711 339 6 920 691 262 63 51 chr12 43979262 43979499 -77278031 - MER67C LTR ERV1 -465 246 7 6 920 228 231 120 90 chr12 43979763 43979863 -77277667 + PB1D10 SINE Alu 15 117 0 6 920 406 346 52 21 chr12 43982152 43982344 -77275186 - MLT1G LTR MaLR -13 582 376 6 920 240 332 78 29 chr12 43982352 43982597 -77274933 - Charlie1a DNA MER1_type -7 1448 1192 6 920 1722 53 4 9 chr12 43982607 43982835 -77274695 - L1Md_A LINE L1 0 6582 6356 6 920 3613 199 66 79 chr12 43982885 43983785 -77273745 + RMER19B LTR ERVK 3 890 -12 6 920 624 283 63 19 chr12 43983805 43984075 -77273455 - Charlie1a DNA MER1_type -314 1141 860 6 920 2026 161 57 55 chr12 43984087 43984788 -77272742 - RMER6C LTR ERVK -59 697 57 6 920 384 268 107 13 chr12 43984789 43984948 -77272582 - Charlie1a DNA MER1_type -619 836 663 6 920 264 261 199 25 chr12 43985205 43985366 -77272164 - MLT1G LTR MaLR -38 352 164 6 920 257 94 0 36 chr12 43985401 43985456 -77272074 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 6 920 366 314 87 23 chr12 43985554 43985772 -77271758 - MLT1B LTR MaLR -158 232 1 6 920 603 325 122 14 chr12 43986372 43986740 -77270790 - RMER5 LTR ERV1 0 534 127 6 920 283 344 44 92 chr12 43986914 43987155 -77270375 - MLT1B-int LTR MaLR -21 1388 1165 6 920 519 17 0 0 chr12 43987271 43987331 -77270199 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 920 611 289 75 19 chr12 43987485 43987631 -77269899 - MLT2B1 LTR ERVL -289 231 73 6 920 288 77 0 0 chr12 43987631 43987670 -77269860 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 920 611 289 75 19 chr12 43987670 43987735 -77269795 - MLT2B1 LTR ERVL -448 72 8 6 920 235 387 76 14 chr12 43987800 43987944 -77269586 - MLT1B-int LTR MaLR -426 1063 911 6 920 239 405 6 0 chr12 43988126 43988240 -77269290 - L2b LINE L2 -177 3210 3092 6 920 321 337 35 47 chr12 43988466 43988637 -77268893 + B4A SINE B4 112 280 -12 6 920 207 0 0 0 chr12 43988741 43988764 -77268766 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 920 2155 179 62 35 chr12 43988765 43989199 -77268331 - RMER6B LTR ERVK -15 446 1 6 920 545 188 50 0 chr12 43989199 43989300 -77268230 - RMER6B LTR ERVK -349 112 7 6 920 516 45 0 0 chr12 43989317 43989384 -77268146 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 920 465 19 0 0 chr12 43989384 43989437 -77268093 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 920 961 150 0 0 chr12 43990555 43990702 -77266828 - B1_Mus1 SINE Alu 0 148 2 6 920 8606 139 26 9 chr12 43991079 43992737 -77264793 - Lx2 LINE L1 0 6997 5314 6 920 570 180 166 0 chr12 43992713 43992852 -77264678 - Lx2 LINE L1 -763 5114 4953 6 920 373 211 22 0 chr12 43992866 43992956 -77264574 - Lx9 LINE L1 -6 7638 7547 6 920 684 113 0 0 chr12 43992952 43993049 -77264481 + L1_Mur3 LINE L1 4467 4563 -1317 6 920 266 169 0 15 chr12 43993053 43993119 -77264411 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 920 357 309 187 68 chr12 43995499 43995895 -77261635 - MER67D LTR ERV1 -35 479 37 6 920 210 37 0 0 chr12 43996713 43996740 -77260790 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 920 355 243 35 9 chr12 43996887 43997013 -77260517 + Lx7 LINE L1 7585 7696 0 6 920 339 331 55 89 chr12 43997157 43997303 -77260227 + MTE2a LTR MaLR 182 322 -57 7 920 814 162 7 0 chr12 43997309 43997451 -77260079 - ORR1A2 LTR MaLR -184 143 1 7 920 654 277 54 0 chr12 43997468 43997634 -77259896 - ORR1D1 LTR MaLR -179 195 21 7 920 491 86 0 0 chr12 43997634 43997695 -77259835 - Lx2 LINE L1 -189 6808 6747 7 920 1088 168 0 0 chr12 43997695 43997886 -77259644 + Lx2 LINE L1 6807 6997 0 7 920 402 212 0 24 chr12 43997886 43997906 -77259624 - Lx2 LINE L1 -211 6355 6338 7 920 23 78 0 0 chr12 43998433 43998484 -77259046 + AT_rich Low_complexity Low_complexity 1 51 0 7 920 405 150 0 0 chr12 43998869 43998969 -77258561 + (TA)n Simple_repeat Simple_repeat 2 101 0 7 920 390 317 175 0 chr12 44001029 44001212 -77256318 - B3 SINE B2 0 216 2 1 920 568 291 17 11 chr12 44001217 44001391 -77256139 - URR1B DNA MER1_type -34 191 17 2 920 1053 278 77 8 chr12 44001542 44001930 -77255600 + MTD LTR MaLR 1 415 -4 3 920 363 23 0 0 chr12 44002379 44002423 -77255107 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 920 6317 36 20 8 chr12 44003282 44004069 -77253461 - L1Md_F3 LINE L1 0 6584 5788 5 920 210 71 0 0 chr12 44004543 44004571 -77252959 + (A)n Simple_repeat Simple_repeat 1 28 0 6 920 615 192 88 0 chr12 44004815 44004940 -77252590 + RMER20A LTR ERVK 381 516 0 7 920 6476 26 0 0 chr12 44004961 44005726 -77251804 - L1Md_F2 LINE L1 -401 5482 4718 8 920 7770 50 5 23 chr12 44005726 44006739 -77250791 + L1Md_F2 LINE L1 5588 6582 0 8 920 1173 164 28 124 chr12 44006761 44007117 -77250413 + RLTRETN_Mm LTR ERVK 1 322 0 9 920 199 66 30 76 chr12 44007217 44007283 -77250247 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 1 920 24 0 0 0 chr12 44007566 44007590 -77249940 + AT_rich Low_complexity Low_complexity 1 24 0 1 920 249 386 94 11 chr12 44008822 44009013 -77248517 + MLT1C LTR MaLR 231 437 -30 1 920 548 291 35 15 chr12 44009114 44009316 -77248214 - HERVL40-int LTR ERVL -6 5524 5319 1 920 322 352 23 54 chr12 44009717 44009846 -77247684 + RSINE1 SINE B4 16 140 -25 1 920 450 0 0 0 chr12 44009849 44009899 -77247631 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 920 270 0 0 0 chr12 44009899 44009928 -77247602 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 920 22 99 0 0 chr12 44010731 44010802 -77246728 + AT_rich Low_complexity Low_complexity 1 71 0 1 920 2378 107 21 16 chr12 44011814 44012169 -77245361 + L1_Mus3 LINE L1 6256 6611 -27 1 920 986 123 7 0 chr12 44012169 44012315 -77245215 + B1_Mm SINE Alu 1 147 0 1 920 2378 107 21 16 chr12 44012315 44012339 -77245191 + L1_Mus3 LINE L1 6612 6637 -1 1 920 206 236 0 0 chr12 44012349 44012404 -77245126 + A-rich Low_complexity Low_complexity 1 55 0 2 920 260 325 99 8 chr12 44012421 44012542 -77244988 - MLT2B1 LTR ERVL -221 299 168 2 920 1298 215 95 13 chr12 44012548 44012863 -77244667 - ORR1D1 LTR MaLR -4 370 30 2 920 291 283 18 0 chr12 44013337 44013450 -77244080 - Lx6 LINE L1 -17 7443 7329 2 920 400 285 104 22 chr12 44013449 44013632 -77243898 - Lx6 LINE L1 -60 7400 7203 2 920 439 296 52 7 chr12 44014091 44014227 -77243303 - B3A SINE B2 -18 180 39 2 920 21 36 0 0 chr12 44014986 44015014 -77242516 + AT_rich Low_complexity Low_complexity 1 28 0 2 920 823 269 82 110 chr12 44015433 44015897 -77241633 + RLTR12B LTR ERVK 47 497 -31 2 920 267 253 0 0 chr12 44015984 44016079 -77241451 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 920 3235 156 31 2 chr12 44017463 44018049 -77239481 - L1_Mur1 LINE L1 -486 5400 4798 2 920 827 136 82 0 chr12 44018045 44018192 -77239338 - L1_Mur1 LINE L1 -1547 4330 4172 2 920 2484 181 51 2 chr12 44018188 44018757 -77238773 + Lx3C LINE L1 5401 6015 -961 3 920 1910 199 88 14 chr12 44018760 44019179 -77238351 + Lx3C LINE L1 6521 6970 -3 3 920 1521 245 25 36 chr12 44021296 44021831 -77235699 - RMER19B LTR ERVK -238 664 138 3 920 315 227 0 162 chr12 44022866 44022971 -77234559 + RSINE1 SINE B4 78 165 0 3 920 270 81 0 0 chr12 44022971 44023008 -77234522 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 920 22 35 0 0 chr12 44023022 44023051 -77234479 + AT_rich Low_complexity Low_complexity 1 29 0 3 920 429 139 42 25 chr12 44023208 44023326 -77234204 - Lx9 LINE L1 -8 7636 7517 3 920 207 69 0 0 chr12 44023387 44023416 -77234114 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 3 920 3701 172 30 8 chr12 44023550 44024206 -77233324 - RLTR33 LTR ERVK -7 671 1 3 920 27415 111 52 23 chr12 44024893 44026746 -77230784 + L1Md_F2 LINE L1 371 2152 -3731 3 920 192 40 0 0 chr12 44026746 44026771 -77230759 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3 920 27415 89 61 23 chr12 44026771 44029956 -77227574 + L1Md_F2 LINE L1 2153 5585 -298 3 920 7167 86 1 7 chr12 44029957 44030956 -77226574 + L1Md_F2 LINE L1 5587 6579 -3 3 920 954 310 74 51 chr12 44030983 44031418 -77226112 + Lx8 LINE L1 6813 7257 -216 4 920 3257 165 111 34 chr12 44031424 44032126 -77225404 + RMER6A LTR ERVK 1 756 0 4 920 246 62 0 0 chr12 44032326 44032358 -77225172 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 920 389 239 143 23 chr12 44032364 44032497 -77225033 + RLTR19C LTR ERVK 11 159 -347 4 920 3599 78 20 2 chr12 44033312 44033799 -77223731 - LTRIS2 LTR ERV1 0 564 69 4 920 229 82 0 39 chr12 44033938 44033989 -77223541 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 920 569 328 67 28 chr12 44034582 44034964 -77222566 + RLTR6-int LTR ERV1 1050 1635 -6143 4 920 203 261 0 0 chr12 44035653 44035699 -77221831 + GA-rich Low_complexity Low_complexity 3 48 0 4 920 2839 180 29 18 chr12 44036228 44036782 -77220748 - RLTR20B2 LTR ERVK 0 560 1 4 920 323 286 28 19 chr12 44037137 44037244 -77220286 + MMERGLN-int LTR ERV1 7071 7178 -378 4 920 324 0 0 0 chr12 44037245 44037281 -77220249 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 920 316 346 33 33 chr12 44037309 44037551 -77219979 + RLTR6-int LTR ERV1 4694 4935 -128 4 920 1337 270 14 14 chr12 44038108 44038454 -77219076 + RLTR19C LTR ERVK 159 504 -2 5 920 210 220 0 0 chr12 44038455 44038514 -77219016 + (ATG)n Simple_repeat Simple_repeat 3 61 0 5 920 780 44 26 0 chr12 44038721 44038834 -77218696 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 5 920 281 343 14 82 chr12 44038841 44038987 -77218543 - B1F1 SINE Alu -11 138 3 5 920 1720 128 97 7 chr12 44039800 44040090 -77217440 - Lx3C LINE L1 -8 6968 6653 5 921 3018 60 17 17 chr12 44041086 44041507 -77216023 + BGLII LTR ERVK 1 421 0 5 921 220 295 165 8 chr12 44042379 44042512 -77215018 + B4 SINE B4 70 223 -69 5 921 410 183 246 25 chr12 44042395 44042513 -77215017 + B1_Mur3 SINE Alu 5 148 -1 5 921 24 0 0 0 chr12 44044790 44044814 -77212716 + AT_rich Low_complexity Low_complexity 1 24 0 5 921 192 77 0 0 chr12 44044936 44044962 -77212568 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 6 921 937 254 119 7 chr12 44045479 44045765 -77211765 + MTD LTR MaLR 102 419 0 6 921 471 335 87 48 chr12 44045768 44045997 -77211533 + B4A SINE B4 20 257 -35 6 921 22 0 0 0 chr12 44046346 44046368 -77211162 + AT_rich Low_complexity Low_complexity 1 22 0 6 921 870 278 64 101 chr12 44046760 44047148 -77210382 - ORR1D1 LTR MaLR 0 374 1 6 921 4393 250 77 39 chr12 44047148 44048419 -77209111 - ORR1D1-int LTR MaLR 0 1370 50 6 921 234 62 0 0 chr12 44048419 44048451 -77209079 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 6 921 4393 250 77 39 chr12 44048451 44048487 -77209043 - ORR1D1-int LTR MaLR -1321 49 14 6 921 469 293 42 18 chr12 44048493 44048660 -77208870 - ORR1D1 LTR MaLR 0 374 204 6 921 1346 200 16 4 chr12 44048636 44048892 -77208638 - RMER10A LTR ERVL -183 259 1 6 921 362 285 46 8 chr12 44048948 44049079 -77208451 - RMER17C-int LTR ERVK -75 3163 3028 6 921 266 214 18 0 chr12 44049111 44049167 -77208363 - RLTR19-int LTR ERVK -2039 4098 4042 6 921 858 262 102 83 chr12 44049175 44049744 -77207786 - RLTR19-int LTR ERVK -3166 2971 2392 6 921 1410 185 152 20 chr12 44049744 44050013 -77207517 + ORR1B1 LTR MaLR 1 318 -76 6 921 2974 67 13 5 chr12 44050013 44050406 -77207124 - MTA_Mm LTR MaLR 0 396 1 7 921 1410 185 152 20 chr12 44050406 44050484 -77207046 + ORR1B1 LTR MaLR 319 394 0 6 921 414 208 17 94 chr12 44050539 44050656 -77206874 - RLTR19-int LTR ERVK -3399 2123 2016 6 921 469 30 15 15 chr12 44050841 44050909 -77206621 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 921 29648 89 52 21 chr12 44051126 44052756 -77204774 - L1Md_F2 LINE L1 0 6582 4884 7 921 238 136 62 92 chr12 44052756 44052821 -77204709 + RMER20A LTR ERVK 186 248 -268 7 921 29648 89 52 21 chr12 44052821 44057047 -77200483 - L1Md_F2 LINE L1 0 4883 475 7 921 3770 114 34 3 chr12 44057962 44058554 -77198976 + L1_Mus4 LINE L1 6015 6624 -12 7 921 358 212 8 81 chr12 44059179 44059302 -77198228 - RMER10A LTR ERVL -1 441 328 7 921 1484 235 50 8 chr12 44059306 44059667 -77197863 + Lx2B LINE L1 6606 6981 -19 7 921 987 155 25 30 chr12 44059871 44060071 -77197459 - RMER6C LTR ERVK 0 690 492 7 921 2076 199 144 12 chr12 44060067 44060586 -77196944 + RMER6C LTR ERVK 94 681 -9 7 921 207 175 0 0 chr12 44061070 44061110 -77196420 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 7 921 304 77 0 0 chr12 44061110 44061149 -77196381 + HAL1-3A_ME LINE L1 1978 2016 -842 8 921 641 275 41 63 chr12 44061310 44061531 -77195999 + Lx8 LINE L1 7146 7361 -112 8 921 26 30 0 0 chr12 44061559 44061592 -77195938 + AT_rich Low_complexity Low_complexity 1 33 0 8 921 22 0 0 0 chr12 44061655 44061677 -77195853 + AT_rich Low_complexity Low_complexity 1 22 0 8 921 486 313 67 42 chr12 44062510 44062823 -77194707 + L1M5 LINE L1 5265 5585 -609 8 921 3515 42 0 2 chr12 44063423 44063854 -77193676 - L1_Mus1 LINE L1 0 6567 6138 8 921 22 0 0 0 chr12 44065011 44065033 -77192497 + AT_rich Low_complexity Low_complexity 1 22 0 8 921 1526 137 16 4 chr12 44065525 44065774 -77191756 - Lx3C LINE L1 -567 6409 6158 8 921 3673 146 9 47 chr12 44065773 44066473 -77191057 - L1_Mur1 LINE L1 -235 5651 4979 8 921 1142 106 0 0 chr12 44066475 44066636 -77190894 + L1_Mur1 LINE L1 4382 4542 -1344 8 921 331 125 28 0 chr12 44068603 44068675 -77188855 + (TA)n Simple_repeat Simple_repeat 2 75 0 9 921 344 98 33 0 chr12 44068766 44068827 -77188703 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 9 921 3732 176 23 23 chr12 44070101 44070794 -77186736 + RLTR25A LTR ERVK 1 693 -410 9 921 710 133 19 32 chr12 44070809 44070964 -77186566 + A-rich Low_complexity Low_complexity 4 156 0 9 921 1551 184 95 75 chr12 44070964 44071375 -77186155 + RLTR25A LTR ERVK 683 1101 -2 9 921 480 215 0 0 chr12 44071547 44071654 -77185876 + (TATG)n Simple_repeat Simple_repeat 2 108 0 9 921 324 0 0 0 chr12 44072868 44072904 -77184626 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 921 724 284 59 22 chr12 44073117 44073384 -77184146 + MTD LTR MaLR 142 405 -14 9 921 2869 270 85 19 chr12 44073846 44074744 -77182786 + RMER1C Other Other 244 1339 -3 9 921 279 0 0 0 chr12 44075272 44075303 -77182227 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 921 218 327 0 0 chr12 44075312 44075367 -77182163 - RSINE1 SINE B4 -23 142 88 9 921 31 0 0 0 chr12 44077493 44077524 -77180006 + AT_rich Low_complexity Low_complexity 1 31 0 1 921 244 211 28 14 chr12 44078502 44078574 -77178956 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 1 921 465 19 0 0 chr12 44078602 44078656 -77178874 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 921 1160 34 0 0 chr12 44079063 44079210 -77178320 + L1Md_A LINE L1 6436 6582 0 1 921 7542 63 3 8 chr12 44080621 44081612 -77175918 + L1Md_F2 LINE L1 5597 6582 0 1 921 22 0 0 0 chr12 44082428 44082450 -77175080 + AT_rich Low_complexity Low_complexity 1 22 0 1 921 282 29 0 0 chr12 44084121 44084156 -77173374 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 921 183 129 0 0 chr12 44084479 44084510 -77173020 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 921 24 0 0 0 chr12 44084661 44084685 -77172845 + AT_rich Low_complexity Low_complexity 1 24 0 1 921 39 22 0 0 chr12 44084921 44084967 -77172563 + AT_rich Low_complexity Low_complexity 1 46 0 1 921 485 297 60 63 chr12 44085287 44085603 -77171927 - L1M2 LINE L1 -1142 5001 4687 1 921 22 0 0 0 chr12 44086773 44086795 -77170735 + AT_rich Low_complexity Low_complexity 1 22 0 1 921 594 0 0 0 chr12 44090253 44090319 -77167211 + (TC)n Simple_repeat Simple_repeat 2 67 0 1 921 1741 150 103 6 chr12 44090650 44090979 -77166551 + Lx3B LINE L1 6610 6970 -3 1 921 1433 200 112 16 chr12 44092286 44092383 -77165147 + Lx9 LINE L1 7158 7252 -392 1 921 360 88 0 0 chr12 44092383 44092440 -77165090 + (CAA)n Simple_repeat Simple_repeat 2 58 0 1 921 1433 200 112 16 chr12 44092440 44092708 -77164822 + Lx9 LINE L1 7253 7557 -87 1 921 425 313 200 18 chr12 44093246 44093526 -77164004 - Lx7 LINE L1 -251 7222 6892 1 921 495 112 0 0 chr12 44093537 44093626 -77163904 + (GA)n Simple_repeat Simple_repeat 1 89 0 1 921 1266 308 96 23 chr12 44093626 44093942 -77163588 - Lx7 LINE L1 -616 6857 6527 1 921 411 21 0 0 chr12 44093942 44093990 -77163540 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1 921 1266 308 96 23 chr12 44093990 44094248 -77163282 - Lx7 LINE L1 -947 6526 6242 1 921 682 314 90 35 chr12 44094242 44094807 -77162723 - L1MA5 LINE L1 -4 6296 5701 1 921 1395 220 47 36 chr12 44094802 44095217 -77162313 - Lx7 LINE L1 -1724 5972 5553 1 921 2935 213 36 3 chr12 44095235 44095928 -77161602 - Lx7 LINE L1 -509 5371 4656 1 921 1769 107 0 15 chr12 44095930 44096223 -77161307 - L1Md_F2 LINE L1 0 6582 6297 1 921 2410 212 146 19 chr12 44096220 44096911 -77160619 - Lx7 LINE L1 -1227 4653 3875 1 921 64 26 0 0 chr12 44096947 44097025 -77160505 + AT_rich Low_complexity Low_complexity 1 78 0 1 921 365 169 0 0 chr12 44097052 44097123 -77160407 - L1Md_F2 LINE L1 -33 6549 6479 1 921 729 102 46 9 chr12 44097113 44097222 -77160308 - L1_Mus1 LINE L1 -346 6221 6109 1 921 625 306 11 11 chr12 44097358 44097543 -77159987 + Lx8 LINE L1 6562 6746 -727 1 921 253 323 131 44 chr12 44097688 44097986 -77159544 - Lx8 LINE L1 -309 7164 6841 1 921 1124 128 22 0 chr12 44098435 44098614 -77158916 - B2_Mm2 SINE B2 -8 187 5 1 921 578 347 47 75 chr12 44098696 44099057 -77158473 + ORR1E LTR MaLR 3 353 -6 1 921 1042 69 21 0 chr12 44099156 44099300 -77158230 - B1_Mm SINE Alu 0 147 1 1 921 361 332 77 19 chr12 44099657 44099918 -77157612 - L1MC1 LINE L1 -19 7766 7491 1 921 715 244 44 33 chr12 44099962 44100144 -77157386 - B3 SINE B2 -9 207 24 1 921 23 0 0 0 chr12 44100273 44100296 -77157234 + AT_rich Low_complexity Low_complexity 1 23 0 1 921 256 314 201 4 chr12 44100296 44100574 -77156956 - L1MC1 LINE L1 -559 7226 6894 1 921 262 257 95 0 chr12 44100800 44100972 -77156558 - L1MC1 LINE L1 -1133 6652 6500 1 921 571 298 45 84 chr12 44101021 44101329 -77156201 - MLT1B LTR MaLR 0 390 95 1 921 222 91 0 0 chr12 44101509 44101542 -77155988 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 921 4859 71 2 3 chr12 44101542 44102176 -77155354 - L1Md_F2 LINE L1 -23 6559 5927 1 921 13695 106 2 8 chr12 44102173 44104990 -77152540 - L1Md_F LINE L1 -2696 3187 387 1 921 180 0 0 0 chr12 44105009 44105029 -77152501 + (T)n Simple_repeat Simple_repeat 1 20 0 1 921 387 350 10 30 chr12 44105261 44105461 -77152069 - L1MC1 LINE L1 -345 5988 5793 1 921 695 154 7 0 chr12 44105508 44105644 -77151886 + Lx2 LINE L1 6859 6995 -2 1 921 526 315 43 12 chr12 44105649 44105906 -77151624 - L1MC1 LINE L1 -1979 5806 5542 1 921 260 247 167 27 chr12 44106344 44106494 -77151036 - L1_Mus3 LINE L1 -4 6634 6464 1 921 315 345 81 23 chr12 44106501 44106673 -77150857 - L1MDb LINE L1 -5249 1160 979 1 921 280 393 59 10 chr12 44107238 44107441 -77150089 - L1MDb LINE L1 -6092 317 105 1 921 27 0 0 0 chr12 44107795 44107822 -77149708 + AT_rich Low_complexity Low_complexity 1 27 0 1 921 26 0 0 0 chr12 44108363 44108389 -77149141 + AT_rich Low_complexity Low_complexity 1 26 0 1 921 1222 328 85 6 chr12 44108406 44108797 -77148733 - Lx8 LINE L1 -5 7468 7031 1 921 180 0 54 54 chr12 44108797 44108834 -77148696 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 921 1222 328 85 6 chr12 44108834 44109101 -77148429 - Lx8 LINE L1 -443 7030 6759 1 921 255 266 121 74 chr12 44109140 44109396 -77148134 + L1_Rod LINE L1 3146 3413 -2434 1 921 6380 108 22 1 chr12 44109821 44110755 -77146775 + L1_Mus4 LINE L1 5677 6630 -6 1 921 312 253 56 22 chr12 44111735 44111824 -77145706 - MTEb LTR MaLR 0 379 288 1 921 2321 86 26 23 chr12 44112038 44112384 -77145146 + L1_Mus2 LINE L1 6218 6564 -2 1 921 723 303 75 65 chr12 44112834 44113353 -77144177 + L1MCa LINE L1 636 1159 -5349 1 921 423 0 0 0 chr12 44113359 44113406 -77144124 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 921 528 277 126 83 chr12 44113711 44114408 -77143122 + L1MCa LINE L1 1539 2265 -4243 1 921 225 0 0 0 chr12 44115142 44115167 -77142363 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 921 310 376 60 49 chr12 44115497 44115844 -77141686 + MLT1A0 LTR MaLR 12 362 -3 1 921 2276 129 3 21 chr12 44116018 44116391 -77141139 + L1_Mus4 LINE L1 6264 6629 -7 1 921 4180 40 0 0 chr12 44116631 44117131 -77140399 + L1Md_A LINE L1 6082 6581 -1 1 921 365 40 105 0 chr12 44117884 44117960 -77139570 + (CAAAA)n Simple_repeat Simple_repeat 3 86 0 1 921 617 58 12 0 chr12 44119125 44119211 -77138319 + (TC)n Simple_repeat Simple_repeat 1 87 0 1 921 213 267 0 0 chr12 44119216 44119261 -77138269 + (CACG)n Simple_repeat Simple_repeat 3 47 0 1 921 302 386 40 83 chr12 44119312 44119589 -77137941 + MLT1F2 LTR MaLR 271 535 -25 1 921 183 315 65 95 chr12 44120029 44120229 -77137301 - L2c LINE L2 -77 3310 3117 1 921 2709 87 0 55 chr12 44121067 44121483 -77136047 - L1_Mus2 LINE L1 -6 6560 6168 1 921 237 83 0 0 chr12 44122174 44122210 -77135320 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 921 186 71 0 0 chr12 44122275 44122303 -77135227 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 921 294 143 0 0 chr12 44122305 44122368 -77135162 + (T)n Simple_repeat Simple_repeat 1 63 0 1 921 22 0 0 0 chr12 44122463 44122485 -77135045 + AT_rich Low_complexity Low_complexity 1 22 0 1 921 261 182 0 0 chr12 44122730 44122785 -77134745 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1 921 390 334 70 21 chr12 44122818 44123315 -77134215 - L1MA4 LINE L1 -414 5886 5284 1 921 344 309 83 73 chr12 44123551 44124020 -77133510 - L1MA4 LINE L1 -1119 5024 4537 1 921 1135 62 0 7 chr12 44124020 44124165 -77133365 + B1_Mus1 SINE Alu 5 148 0 1 921 344 309 83 73 chr12 44124165 44124285 -77133245 - L1MA4 LINE L1 -1607 4536 4429 1 921 473 47 16 0 chr12 44124351 44124415 -77133115 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 921 310 382 105 8 chr12 44124878 44125002 -77132528 + RSINE1 SINE B4 1 136 -29 1 921 3619 263 39 19 chr12 44125741 44126795 -77130735 + L1_Mur3 LINE L1 48 1122 -6606 1 921 33 0 0 0 chr12 44126795 44126828 -77130702 + AT_rich Low_complexity Low_complexity 1 33 0 1 921 4306 186 45 212 chr12 44126889 44129043 -77128487 + L1_Mur3 LINE L1 2525 4317 -1563 1 921 10268 249 75 119 chr12 44129041 44130692 -77126838 + Lx6 LINE L1 56 1629 -4251 1 921 186 43 0 0 chr12 44130692 44130715 -77126815 + (CAGAC)n Simple_repeat Simple_repeat 2 24 0 1 921 10268 199 156 86 chr12 44130715 44131124 -77126406 + Lx6 LINE L1 1630 2055 -3825 1 921 279 79 0 0 chr12 44131124 44131162 -77126368 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 921 10268 199 156 86 chr12 44131162 44131312 -77126218 + Lx6 LINE L1 2056 2177 -3703 1 921 254 50 25 0 chr12 44131312 44131352 -77126178 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 921 10268 199 156 86 chr12 44131352 44133245 -77124285 + Lx6 LINE L1 2178 4394 -1486 1 921 493 75 0 0 chr12 44133245 44133312 -77124218 + ORR1A4 LTR MaLR 263 329 0 1 921 10268 199 156 86 chr12 44133312 44133566 -77123964 + Lx6 LINE L1 4395 4693 -1187 1 921 219 36 0 0 chr12 44133566 44133594 -77123936 + (TACTG)n Simple_repeat Simple_repeat 3 30 0 1 921 10268 199 156 86 chr12 44133594 44133699 -77123831 + Lx6 LINE L1 4694 4802 -1078 1 921 253 286 0 38 chr12 44133699 44133779 -77123751 - MT2B LTR ERVL -134 467 391 1 921 10268 199 156 86 chr12 44133779 44134161 -77123369 + Lx6 LINE L1 4803 5202 -678 1 921 1176 165 10 0 chr12 44134159 44134365 -77123165 + Lx3C LINE L1 6093 6300 -676 1 921 1697 24 48 0 chr12 44134365 44134572 -77122958 + L1Md_F3 LINE L1 6354 6570 -14 1 921 3492 138 79 13 chr12 44134582 44135156 -77122374 + Lx3C LINE L1 6295 6912 -64 1 921 1109 17 613 0 chr12 44135156 44135337 -77122193 - RLTR10B LTR ERVK 0 292 1 1 921 3492 138 79 13 chr12 44135337 44135395 -77122135 + Lx3C LINE L1 6913 6969 -7 1 921 565 171 43 7 chr12 44135432 44135573 -77121957 + Lx6 LINE L1 5215 5360 -520 1 921 860 195 83 10 chr12 44135585 44135777 -77121753 - MT2B LTR ERVL -8 593 388 1 921 2599 183 26 12 chr12 44135796 44136372 -77121158 + L1_Mur2 LINE L1 2728 3311 -2566 1 921 983 216 343 0 chr12 44136375 44136672 -77120858 - MT2B LTR ERVL -202 399 1 1 921 2283 221 6 4 chr12 44136673 44137155 -77120375 + Lx6 LINE L1 5365 5847 -33 1 921 975 152 59 55 chr12 44137372 44137627 -77119903 + RLTR33 LTR ERVK 1 345 -333 1 921 35406 37 1 0 chr12 44137627 44143894 -77113636 + L1Md_T LINE L1 1 5589 -297 1 921 8984 5 0 0 chr12 44143894 44144890 -77112640 + L1Md_T LINE L1 5590 6585 0 1 921 1751 214 3 3 chr12 44144892 44145216 -77112314 + RLTR33 LTR ERVK 355 678 0 1 921 4909 260 36 22 chr12 44145216 44146009 -77111521 + Lx6 LINE L1 5846 6637 -823 1 921 1914 128 42 60 chr12 44146009 44146341 -77111189 - ORR1A3 LTR MaLR 0 326 1 1 921 4909 260 36 22 chr12 44146341 44146843 -77110687 + Lx6 LINE L1 6638 7160 -300 1 921 6291 219 57 10 chr12 44146844 44148693 -77108837 + Lx7 LINE L1 4312 6255 -1441 1 921 3279 257 53 36 chr12 44148689 44149651 -77107879 + Lx7 LINE L1 6370 7347 -349 1 921 21 0 0 0 chr12 44149713 44149734 -77107796 + AT_rich Low_complexity Low_complexity 1 21 0 1 921 416 175 9 37 chr12 44149761 44149868 -77107662 + Lx6 LINE L1 7352 7455 -5 1 921 492 18 0 0 chr12 44149876 44149933 -77107597 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 921 220 262 16 16 chr12 44151045 44151107 -77106423 + ID4_ SINE ID 3 64 -19 1 921 24 77 0 0 chr12 44151394 44151446 -77106084 + AT_rich Low_complexity Low_complexity 1 52 0 1 921 4965 213 57 18 chr12 44152108 44153185 -77104345 + Lx5 LINE L1 5915 7033 -17 1 921 228 35 0 0 chr12 44153186 44153215 -77104315 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 1 921 427 269 0 8 chr12 44154402 44154522 -77103008 - Lx2B LINE L1 -1 6999 6881 1 921 441 0 0 0 chr12 44154528 44154577 -77102953 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 921 402 21 0 0 chr12 44154577 44154623 -77102907 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 921 661 186 8 0 chr12 44154627 44154745 -77102785 + Lx3C LINE L1 6459 6577 -399 1 921 249 216 0 33 chr12 44154812 44154903 -77102627 + CT-rich Low_complexity Low_complexity 1 88 0 1 921 410 357 76 24 chr12 44155724 44156065 -77101465 - L1MEf LINE L1 -3224 2922 2564 1 921 434 201 311 12 chr12 44156088 44156258 -77101272 + MTE2b LTR MaLR 159 379 0 1 921 683 243 105 5 chr12 44156308 44156498 -77101032 + B3 SINE B2 1 209 -7 2 921 418 320 81 42 chr12 44157052 44157437 -77100093 - L1MEf LINE L1 -4547 1695 1296 1 921 189 345 123 16 chr12 44157455 44157682 -77099848 + MIRc SINE MIR 9 254 -8 2 921 390 21 0 0 chr12 44157973 44158020 -77099510 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 921 22 35 0 0 chr12 44158324 44158353 -77099177 + AT_rich Low_complexity Low_complexity 1 29 0 2 921 828 305 76 37 chr12 44158804 44159158 -77098372 - ORR1D2 LTR MaLR 0 370 3 2 921 4023 255 127 62 chr12 44160077 44160349 -77097181 - L1_Mus3 LINE L1 -1115 4762 4463 2 921 2305 73 19 0 chr12 44160349 44160662 -77096868 + L1_Mus1 LINE L1 6249 6567 0 2 921 5505 172 57 26 chr12 44160662 44162831 -77094699 - L1_Mus3 LINE L1 -232 6406 2170 2 921 3417 68 11 13 chr12 44162856 44163318 -77094212 - L1Md_F2 LINE L1 -13 6569 6109 2 921 6411 128 30 16 chr12 44163318 44163642 -77093888 + RLTR13D4 LTR ERVK 3 330 -703 2 921 2318 51 0 13 chr12 44163642 44163941 -77093589 + L1Md_F3 LINE L1 6289 6583 -1 2 921 6411 128 30 16 chr12 44163941 44164633 -77092897 + RLTR13D4 LTR ERVK 331 1033 0 2 921 5976 117 17 29 chr12 44164634 44166376 -77091154 - L1VL1 LINE L1 -1742 1956 236 2 921 26 64 0 0 chr12 44166381 44166428 -77091102 + AT_rich Low_complexity Low_complexity 1 47 0 2 921 3477 270 46 6 chr12 44166680 44167589 -77089941 - Lx6 LINE L1 -53 7407 6462 2 921 2704 182 77 38 chr12 44167622 44168285 -77089245 + RMER6C LTR ERVK 2 690 0 2 921 1776 225 57 51 chr12 44168339 44168812 -77088718 + Lx6 LINE L1 5993 6468 -992 2 921 23 0 0 0 chr12 44169084 44169107 -77088423 + AT_rich Low_complexity Low_complexity 1 23 0 2 921 855 103 20 0 chr12 44169130 44169276 -77088254 + (TC)n Simple_repeat Simple_repeat 2 150 0 2 921 633 312 54 23 chr12 44169302 44169561 -77087969 + Lx9 LINE L1 6228 6637 -1007 2 921 408 20 0 0 chr12 44170213 44170262 -77087268 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 922 731 145 0 6 chr12 44172082 44172255 -77085275 + (TA)n Simple_repeat Simple_repeat 1 172 0 2 922 24 53 0 0 chr12 44173327 44173365 -77084165 + AT_rich Low_complexity Low_complexity 1 38 0 2 922 967 330 80 62 chr12 44173573 44173946 -77083584 + ERVL-B4-int LTR ERVL 1861 2249 -3465 2 922 1415 212 16 135 chr12 44173946 44174377 -77083153 - RLTR14 LTR ERV1 0 382 3 2 922 967 330 80 62 chr12 44174377 44174619 -77082911 + ERVL-B4-int LTR ERVL 2250 2487 -3227 2 922 313 376 66 20 chr12 44174649 44174801 -77082729 - ID_B1 SINE B4 -63 161 3 2 922 753 335 52 3 chr12 44175238 44175526 -77082004 + ERVL-B4-int LTR ERVL 3973 4274 -1440 2 922 1148 68 0 7 chr12 44175708 44175857 -77081673 + B1_Mus1 SINE Alu 1 148 0 2 922 1188 144 59 40 chr12 44177845 44178098 -77079432 + Lx3C LINE L1 6709 6966 -10 2 922 257 51 0 25 chr12 44178105 44178145 -77079385 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 922 513 125 0 71 chr12 44178519 44178631 -77078899 + Lx2 LINE L1 6894 6997 0 2 922 24 32 0 0 chr12 44179101 44179132 -77078398 + AT_rich Low_complexity Low_complexity 1 31 0 2 922 439 319 61 22 chr12 44180486 44180821 -77076709 - Lx7 LINE L1 -1782 5914 5535 2 922 480 280 38 0 chr12 44181091 44181223 -77076307 - Lx7 LINE L1 -46 7650 7514 2 922 463 119 0 0 chr12 44181232 44181299 -77076231 - Lx2A LINE L1 -1121 5887 5821 2 922 4172 53 0 4 chr12 44181318 44181844 -77075686 - L1Md_F2 LINE L1 -5 6577 6054 2 922 4849 65 5 3 chr12 44181844 44182480 -77075050 + L1_Mm LINE L1 4294 4930 -953 2 922 920 135 0 0 chr12 44182468 44182609 -77074921 - Lx3_Mus LINE L1 -1164 5845 5705 2 922 5673 131 72 14 chr12 44182606 44183696 -77073834 + Lx3A LINE L1 5870 6986 -23 2 922 216 0 0 0 chr12 44183696 44183720 -77073810 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 922 4910 171 61 34 chr12 44183720 44183735 -77073795 + Lx3A LINE L1 6987 7003 -6 2 922 453 204 0 0 chr12 44183834 44183971 -77073559 + (TA)n Simple_repeat Simple_repeat 1 137 0 2 922 408 82 0 0 chr12 44184063 44184124 -77073406 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 2 922 5111 250 85 9 chr12 44184134 44185504 -77072026 - Lx7 LINE L1 -394 7302 5829 2 922 621 237 16 42 chr12 44185692 44185903 -77071627 - B3 SINE B2 0 195 1 2 922 313 44 58 14 chr12 44186397 44186466 -77071064 + (TTTTA)n Simple_repeat Simple_repeat 2 73 0 2 922 1156 56 0 0 chr12 44186481 44186623 -77070907 - B1_Mm SINE Alu -5 142 1 2 922 336 314 92 8 chr12 44186707 44186826 -77070704 - RSINE1 SINE B4 -34 131 3 2 922 332 330 0 7 chr12 44186994 44187080 -77070450 - B3 SINE B2 -64 152 73 2 922 2714 123 30 27 chr12 44187114 44187589 -77069941 - L1_Mus4 LINE L1 0 6636 6161 2 922 22 70 0 0 chr12 44187742 44187785 -77069745 + AT_rich Low_complexity Low_complexity 1 43 0 2 922 1010 254 38 3 chr12 44188777 44189065 -77068465 - Lx4B LINE L1 -721 6337 6040 2 922 1850 220 24 3 chr12 44189062 44189436 -77068094 + Lx4B LINE L1 6362 6743 -315 2 922 438 20 0 0 chr12 44189439 44189490 -77068040 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 922 404 267 22 11 chr12 44189525 44189616 -77067914 - PB1D9 SINE Alu -22 98 7 2 922 786 299 68 45 chr12 44189736 44190044 -77067486 - MTEb LTR MaLR 0 379 65 2 922 486 338 125 10 chr12 44190536 44190841 -77066689 + LTR40a LTR ERVL 180 519 0 2 922 207 0 0 0 chr12 44190938 44190961 -77066569 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 922 39 60 0 0 chr12 44191683 44191750 -77065780 + AT_rich Low_complexity Low_complexity 1 67 0 2 922 22316 106 10 22 chr12 44191750 44193387 -77064143 - L1_Mus2 LINE L1 -1 6565 4933 2 922 1197 55 0 0 chr12 44193387 44193533 -77063997 + B1_Mus1 SINE Alu 2 147 -1 2 922 22316 131 12 32 chr12 44193533 44195197 -77062333 - L1_Mus2 LINE L1 -951 4932 3306 2 922 4092 62 0 4 chr12 44195197 44195718 -77061812 - L1Md_F2 LINE L1 -1 6581 6063 2 922 22316 131 12 32 chr12 44195718 44196975 -77060555 - L1_Mus2 LINE L1 -2578 3305 2090 2 922 537 288 62 0 chr12 44196979 44197139 -77060391 + Lx9 LINE L1 6645 6814 -830 2 922 236 348 33 0 chr12 44197214 44197306 -77060224 + B1F SINE Alu 46 140 -9 2 922 882 111 0 0 chr12 44197332 44197476 -77060054 + L1_Mus2 LINE L1 6422 6565 -1 2 922 295 304 0 28 chr12 44197507 44197578 -77059952 + ID4_ SINE ID 7 75 -8 2 922 21 36 0 0 chr12 44198524 44198552 -77058978 + AT_rich Low_complexity Low_complexity 1 28 0 2 922 290 223 11 53 chr12 44200097 44200209 -77057321 + A-rich Low_complexity Low_complexity 1 107 0 2 922 276 30 0 0 chr12 44200209 44200242 -77057288 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 922 290 291 0 19 chr12 44200242 44200327 -77057203 + A-rich Low_complexity Low_complexity 74 155 0 2 922 460 336 94 0 chr12 44201152 44201387 -77056143 - MER2 DNA MER2_type 0 345 89 2 922 5152 277 46 26 chr12 44202652 44204206 -77053324 + Lx6 LINE L1 5587 7170 -290 2 922 1366 195 7 29 chr12 44204207 44204487 -77053043 - RLTR14-int LTR ERV1 -557 4760 4487 2 922 3054 237 43 30 chr12 44204691 44205527 -77052003 - RLTR14-int LTR ERV1 -871 4446 3600 2 922 958 248 55 40 chr12 44205539 44205867 -77051663 - RLTR15 LTR ERVK -26 333 1 2 922 3929 232 66 101 chr12 44205896 44207091 -77050439 - RLTR14-int LTR ERV1 -1751 3566 2414 2 922 1571 284 46 24 chr12 44207184 44208114 -77049416 - RLTR14-int LTR ERV1 -3762 3794 2038 2 922 596 170 20 10 chr12 44208169 44208270 -77049260 - RLTR14-int LTR ERV1 -3695 1622 1521 2 922 475 223 34 40 chr12 44208260 44208453 -77049077 - RLTR14-int LTR ERV1 -3803 1514 1417 2 922 281 337 57 61 chr12 44208497 44208709 -77048821 - RLTR14-int LTR ERV1 -5448 2330 2120 2 922 360 241 96 62 chr12 44208820 44208966 -77048564 - RLTR14-int LTR ERV1 -4139 1178 1028 2 922 675 257 80 18 chr12 44210106 44210332 -77047198 - RLTR14-int LTR ERV1 -4871 446 207 2 922 1259 199 76 143 chr12 44211068 44211150 -77046380 - RMER6C LTR ERVK -2 688 609 2 922 267 54 0 0 chr12 44211150 44211187 -77046343 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 922 333 0 0 0 chr12 44211188 44211225 -77046305 + (TTAG)n Simple_repeat Simple_repeat 3 39 0 2 922 1259 199 76 143 chr12 44211225 44211586 -77045944 - RMER6C LTR ERVK -82 608 273 2 922 868 249 174 87 chr12 44211587 44212140 -77045390 + MT2B LTR ERVL 1 601 0 2 922 1647 255 62 7 chr12 44212242 44212664 -77044866 + Lx9 LINE L1 6705 7149 -495 2 922 298 277 13 13 chr12 44212668 44212825 -77044705 + Lx9 LINE L1 7481 7637 -7 2 922 1607 120 35 0 chr12 44212846 44213105 -77044425 + L1_Mus3 LINE L1 6370 6637 -1 2 922 338 302 105 19 chr12 44213140 44213302 -77044228 - L1MC3 LINE L1 -696 7089 6914 2 922 287 278 41 7 chr12 44213364 44213509 -77044021 - L1MC LINE L1 -1497 4649 4500 2 922 447 317 47 20 chr12 44213950 44214098 -77043432 - MTEa LTR MaLR -201 178 27 2 922 317 107 0 0 chr12 44214099 44214155 -77043375 + Lx LINE L1 6592 6647 -7 2 922 754 322 34 0 chr12 44214203 44214408 -77043122 + B3 SINE B2 5 216 0 2 922 242 300 114 0 chr12 44214472 44214542 -77042988 - B3A SINE B2 -14 184 107 2 922 225 319 28 28 chr12 44214636 44214707 -77042823 - B3A SINE B2 -121 77 7 2 922 477 327 49 12 chr12 44216470 44216634 -77040896 - MTD LTR MaLR -24 395 226 2 922 497 299 50 0 chr12 44216648 44216869 -77040661 - Lx9 LINE L1 -111 7533 7302 2 922 601 317 28 33 chr12 44216873 44217085 -77040445 - MTD LTR MaLR -208 211 1 2 922 3877 145 7 60 chr12 44217638 44218366 -77039164 + Lx2A LINE L1 6313 7001 -7 2 922 2832 129 63 2 chr12 44219271 44219730 -77037800 + Lx3B LINE L1 6482 6968 -5 2 922 216 163 0 0 chr12 44219736 44219779 -77037751 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2 922 23 54 0 0 chr12 44220301 44220338 -77037192 + AT_rich Low_complexity Low_complexity 1 37 0 2 922 378 0 0 0 chr12 44221206 44221248 -77036282 + (T)n Simple_repeat Simple_repeat 1 42 0 2 922 1190 71 35 0 chr12 44221305 44221475 -77036055 + L1_Mus1 LINE L1 5889 6064 -503 2 922 414 319 95 41 chr12 44221828 44221975 -77035555 - RSINE1 SINE B4 -2 163 9 2 922 1430 279 42 8 chr12 44222625 44222979 -77034551 - MTD LTR MaLR -41 378 13 2 922 22 35 0 0 chr12 44224570 44224599 -77032931 + AT_rich Low_complexity Low_complexity 1 29 0 2 922 6340 48 14 1 chr12 44225046 44225844 -77031686 - L1Md_F2 LINE L1 -1 6581 5774 2 922 4164 196 30 25 chr12 44225865 44226717 -77030813 - Lx5 LINE L1 -51 6999 6143 2 922 1248 181 78 4 chr12 44226734 44226989 -77030541 + Lx5 LINE L1 5838 6111 -939 2 922 547 242 110 22 chr12 44227835 44228017 -77029513 - RMER12B LTR ERVK -6 1398 1201 2 922 4166 221 69 49 chr12 44228025 44229129 -77028401 - RLTR21 LTR ERVK -443 1129 4 2 922 223 345 25 25 chr12 44229587 44229709 -77027821 + MER5B DNA MER1_type 48 169 -9 2 922 668 299 53 14 chr12 44230337 44230544 -77026986 + B4A SINE B4 1 215 -77 2 922 277 77 0 0 chr12 44230565 44230617 -77026913 - L1_Mus4 LINE L1 -3 6633 6582 2 922 676 119 96 7 chr12 44230624 44230759 -77026771 - L1_Mus4 LINE L1 -3 6633 6487 3 922 1685 80 14 11 chr12 44230759 44231036 -77026494 + MusHAL1 LINE L1 677 954 -1758 3 922 186 43 0 0 chr12 44231280 44231303 -77026227 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 922 21 0 0 0 chr12 44231979 44232000 -77025530 + AT_rich Low_complexity Low_complexity 1 21 0 3 922 21 0 0 0 chr12 44232409 44232430 -77025100 + AT_rich Low_complexity Low_complexity 1 21 0 3 922 242 402 52 40 chr12 44233153 44233402 -77024128 + B4A SINE B4 14 265 -27 3 922 245 145 16 0 chr12 44233469 44233531 -77023999 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 922 657 237 131 45 chr12 44234490 44234689 -77022841 + MLT2B1 LTR ERVL 3 218 -302 3 922 23 68 0 0 chr12 44234698 44234742 -77022788 + AT_rich Low_complexity Low_complexity 1 44 0 3 922 363 96 0 0 chr12 44234742 44234794 -77022736 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 922 213 39 0 0 chr12 44234935 44234961 -77022569 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 922 3852 163 69 10 chr12 44234981 44235694 -77021836 - Lx2 LINE L1 0 6997 6243 3 922 195 204 0 0 chr12 44235860 44235904 -77021626 + (TATG)n Simple_repeat Simple_repeat 3 46 0 3 922 492 134 0 0 chr12 44235918 44236015 -77021515 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 922 717 34 0 0 chr12 44236018 44236106 -77021424 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 922 21 0 0 0 chr12 44236682 44236703 -77020827 + AT_rich Low_complexity Low_complexity 1 21 0 3 922 874 221 82 0 chr12 44237741 44237949 -77019581 + URR1B DNA MER1_type 1 225 0 3 922 1678 241 11 21 chr12 44238272 44238645 -77018885 - Lx5 LINE L1 -497 6553 6185 3 922 1100 297 0 26 chr12 44238666 44238970 -77018560 + Lx5 LINE L1 6575 6870 -180 3 922 309 109 0 0 chr12 44239160 44239206 -77018324 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 3 922 3768 224 5 10 chr12 44239269 44240035 -77017495 - Lx5 LINE L1 -173 6877 6116 3 922 307 307 84 26 chr12 44240209 44240363 -77017167 - RMER13A LTR ERVK -139 721 559 3 922 486 125 0 0 chr12 44240363 44240443 -77017087 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 922 3532 186 14 7 chr12 44240518 44241206 -77016324 - L1_Mur2 LINE L1 -264 5613 4921 3 922 1017 152 0 0 chr12 44241200 44241358 -77016172 + L1_Mur2 LINE L1 4667 4824 -1053 3 922 21 36 0 0 chr12 44241440 44241468 -77016062 + AT_rich Low_complexity Low_complexity 1 28 0 3 922 244 312 0 61 chr12 44241751 44241850 -77015680 - Lx9 LINE L1 -212 7432 7340 3 922 256 352 9 18 chr12 44241867 44241977 -77015553 + Lx8 LINE L1 7139 7247 -226 3 922 657 111 37 0 chr12 44242468 44242576 -77014954 - Lx LINE L1 -324 6330 6219 3 922 1578 146 38 10 chr12 44242577 44242867 -77014663 + Lx LINE L1 6350 6647 -7 3 922 23 0 0 0 chr12 44242941 44242964 -77014566 + AT_rich Low_complexity Low_complexity 1 23 0 3 922 22 0 0 0 chr12 44243338 44243360 -77014170 + AT_rich Low_complexity Low_complexity 1 22 0 3 922 1306 86 27 0 chr12 44243552 44243739 -77013791 + B2_Mm1t SINE B2 2 193 0 3 922 282 317 20 10 chr12 44244261 44244363 -77013167 - MLT2B3 LTR ERVL -448 106 4 3 922 3167 56 5 0 chr12 44244745 44245153 -77012377 + L1Md_F2 LINE L1 6172 6581 -1 3 922 3013 17 6 0 chr12 44245248 44245599 -77011931 - L1Md_A LINE L1 0 6582 6230 3 922 3623 69 8 6 chr12 44246254 44246734 -77010796 - L1Md_F3 LINE L1 -1 6583 6103 3 922 669 263 87 26 chr12 44247432 44247662 -77009868 - RLTR16 LTR ERVK -261 244 1 3 922 192 40 0 0 chr12 44248409 44248434 -77009096 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3 922 242 359 0 29 chr12 44248445 44248554 -77008976 + B1_Mus1 SINE Alu 24 123 -25 3 922 329 0 0 24 chr12 44248557 44248599 -77008931 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 3 922 315 0 0 0 chr12 44248957 44248992 -77008538 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 922 3173 214 82 34 chr12 44248994 44249763 -77007767 + RLTR40 LTR ERVK 2 807 -10 3 922 4578 155 32 67 chr12 44249869 44251311 -77006219 - Lx4B LINE L1 -627 6431 5015 3 922 322 234 65 9 chr12 44251326 44251434 -77006096 + Lx4B LINE L1 6945 7058 0 3 922 424 330 28 5 chr12 44251468 44251684 -77005846 + Lx6 LINE L1 92 312 -7416 3 922 2215 247 24 20 chr12 44251681 44252343 -77005187 + Lx6 LINE L1 5517 6189 -1271 3 922 963 107 6 23 chr12 44252344 44252517 -77005013 - L1Md_F2 LINE L1 -6 6576 6407 3 922 413 286 256 5 chr12 44253181 44253392 -77004138 + MTD LTR MaLR 156 419 0 3 922 21 36 0 0 chr12 44253435 44253463 -77004067 + AT_rich Low_complexity Low_complexity 1 28 0 3 922 26 30 0 0 chr12 44253494 44253527 -77004003 + AT_rich Low_complexity Low_complexity 1 33 0 3 922 198 106 64 0 chr12 44253533 44253580 -77003950 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 922 200 214 0 0 chr12 44253637 44253679 -77003851 + CT-rich Low_complexity Low_complexity 3 44 0 3 922 325 53 0 35 chr12 44253679 44253737 -77003793 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 3 922 2687 62 18 0 chr12 44253737 44254077 -77003453 - L1Md_F2 LINE L1 -40 6542 6197 3 922 183 129 0 0 chr12 44254077 44254108 -77003422 + (T)n Simple_repeat Simple_repeat 1 31 0 3 922 557 344 91 57 chr12 44254839 44255292 -77002238 - Lx8 LINE L1 -10 7463 6996 3 922 2160 300 47 39 chr12 44255499 44256452 -77001078 + Lx8 LINE L1 6060 7020 -453 3 922 300 293 20 10 chr12 44256691 44256791 -77000739 + PB1D10 SINE Alu 8 108 -9 3 922 1549 39 0 0 chr12 44256950 44257131 -77000399 + L1Md_F2 LINE L1 5406 5586 -297 3 922 7640 63 1 14 chr12 44257131 44258138 -76999392 + L1Md_F2 LINE L1 5587 6580 -2 3 922 327 25 0 0 chr12 44259077 44259117 -76998413 + (CATA)n Simple_repeat Simple_repeat 2 41 0 3 922 944 139 6 0 chr12 44259117 44259289 -76998241 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 3 922 262 331 100 69 chr12 44259539 44259669 -76997861 - ID_B1 SINE B4 -4 220 87 3 922 375 316 162 48 chr12 44260501 44260768 -76996762 - MER67C LTR ERV1 -306 405 102 3 922 3796 75 6 12 chr12 44260768 44261281 -76996249 - L1_Mus1 LINE L1 -1 6566 6057 3 922 298 320 65 83 chr12 44261281 44261382 -76996148 - MER67C LTR ERV1 -411 103 3 3 922 511 82 11 23 chr12 44261568 44261644 -76995886 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 3 922 1034 130 6 0 chr12 44261644 44261821 -76995709 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 3 922 511 82 11 23 chr12 44261821 44261831 -76995699 + (TTTC)n Simple_repeat Simple_repeat 3 12 0 3 922 367 289 52 7 chr12 44262267 44262403 -76995127 + L1_Mur3 LINE L1 704 845 -6883 3 922 480 259 27 0 chr12 44262738 44262885 -76994645 + L1_Mur3 LINE L1 844 994 -6734 3 922 506 246 46 65 chr12 44262913 44263130 -76994400 + L1_Mur3 LINE L1 1905 2117 -3763 3 922 1156 173 28 5 chr12 44263131 44263346 -76994184 + URR1A DNA MER1_type 7 226 0 3 922 251 267 0 0 chr12 44263347 44263437 -76994093 + L1_Mur3 LINE L1 3044 3133 -2747 3 922 2922 233 71 20 chr12 44263468 44264455 -76993075 + L1_Mur3 LINE L1 3116 4152 -1728 3 922 775 236 71 0 chr12 44264451 44264633 -76992897 - Lx7 LINE L1 -1304 6392 6198 3 922 456 215 0 0 chr12 44264637 44264744 -76992786 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 922 377 192 8 0 chr12 44264731 44264856 -76992674 + (TA)n Simple_repeat Simple_repeat 1 126 0 3 922 22 0 0 0 chr12 44264859 44264881 -76992649 + AT_rich Low_complexity Low_complexity 1 22 0 3 922 1118 213 115 83 chr12 44264881 44265290 -76992240 - Lx7 LINE L1 -637 5243 4822 3 922 607 262 14 0 chr12 44265288 44265429 -76992101 + Lx7 LINE L1 6424 6566 -1130 3 922 204 229 0 0 chr12 44265429 44265512 -76992018 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 922 3014 268 19 3 chr12 44265512 44266269 -76991261 + Lx7 LINE L1 6554 7322 -374 3 922 422 253 125 30 chr12 44266282 44266514 -76991016 + Lx7 LINE L1 7443 7696 0 3 922 234 62 0 0 chr12 44266516 44266548 -76990982 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 922 395 53 35 0 chr12 44267123 44267180 -76990350 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 3 922 985 117 7 0 chr12 44267182 44267327 -76990203 - B1_Mus2 SINE Alu 0 147 2 3 922 3181 63 0 2 chr12 44267630 44268027 -76989503 + MTA_Mm LTR MaLR 1 396 0 3 922 480 186 75 58 chr12 44268087 44268207 -76989323 - B1_Mur3 SINE Alu 0 149 28 3 922 1079 182 108 193 chr12 44268214 44268712 -76988818 + RMER6B LTR ERVK 3 458 -3 3 922 21 36 0 0 chr12 44268865 44268893 -76988637 + AT_rich Low_complexity Low_complexity 1 28 0 3 922 379 293 102 87 chr12 44270084 44270418 -76987112 + ORR1E LTR MaLR 1 354 -25 3 922 302 301 88 27 chr12 44270439 44270586 -76986944 - L1MEf LINE L1 -5205 995 840 3 922 309 89 0 0 chr12 44270635 44270680 -76986850 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 922 255 357 0 30 chr12 44270699 44270800 -76986730 - MLT1A LTR MaLR -212 162 65 3 922 342 289 59 59 chr12 44272402 44272689 -76984841 - L1M5 LINE L1 -635 5544 5258 3 922 320 283 85 80 chr12 44272691 44272891 -76984639 - L1MC LINE L1 -907 5239 5039 3 922 608 70 0 11 chr12 44273266 44273353 -76984177 + (TTC)n Simple_repeat Simple_repeat 2 87 0 3 922 48 18 0 0 chr12 44273355 44273410 -76984120 + AT_rich Low_complexity Low_complexity 1 55 0 3 922 5598 135 51 11 chr12 44273411 44274347 -76983183 - Lx3B LINE L1 -3 6970 5997 3 922 507 300 67 103 chr12 44274540 44274693 -76982837 + B3 SINE B2 1 151 -65 3 922 969 101 0 0 chr12 44274693 44274832 -76982698 - L1_Mus2 LINE L1 -1 6565 6427 3 922 507 300 67 103 chr12 44274832 44274901 -76982629 + B3 SINE B2 152 214 -2 3 922 627 307 39 0 chr12 44275557 44275714 -76981816 + B3 SINE B2 4 164 -52 3 922 333 0 0 0 chr12 44275714 44275751 -76981779 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 922 627 307 39 0 chr12 44275751 44275772 -76981758 + B3 SINE B2 165 188 -28 3 922 236 244 39 23 chr12 44275826 44275956 -76981574 - Lx9 LINE L1 -4 7640 7509 3 922 35276 36 0 1 chr12 44276259 44281692 -76975838 + L1Md_T LINE L1 63 5589 -297 3 922 8990 5 0 0 chr12 44281692 44282708 -76974822 + L1Md_T LINE L1 5590 6585 0 3 922 242 246 57 14 chr12 44282742 44282812 -76974718 + MLT1A1 LTR MaLR 336 408 0 3 922 383 370 69 4 chr12 44282816 44283047 -76974483 + MLT1C LTR MaLR 88 333 -134 3 922 40 21 0 0 chr12 44284258 44284305 -76973225 + AT_rich Low_complexity Low_complexity 1 47 0 3 922 305 24 24 0 chr12 44284435 44284477 -76973053 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 922 1094 63 0 14 chr12 44284477 44284615 -76972915 - B1_Mm SINE Alu -10 137 1 3 922 225 0 0 0 chr12 44284936 44284961 -76972569 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 922 3204 170 47 20 chr12 44284991 44285620 -76971910 - Lx4B LINE L1 -108 6950 6316 4 922 571 216 12 84 chr12 44285622 44285789 -76971741 + Lx LINE L1 6157 6311 -747 4 922 21 0 0 0 chr12 44286107 44286128 -76971402 + AT_rich Low_complexity Low_complexity 1 21 0 4 922 5598 113 10 16 chr12 44287088 44287957 -76969573 - L1_Mus4 LINE L1 -221 6415 5555 4 922 1386 137 4 21 chr12 44287957 44288195 -76969335 + Lx LINE L1 6420 6653 -1 4 922 369 0 0 0 chr12 44288249 44288290 -76969240 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 922 342 0 0 0 chr12 44288290 44288327 -76969203 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 922 690 306 17 6 chr12 44288357 44288538 -76968992 + B3 SINE B2 17 199 -17 4 922 220 27 26 26 chr12 44289121 44289159 -76968371 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 4 922 336 338 52 19 chr12 44289305 44289558 -76967972 + L1MC2 LINE L1 5889 6147 -186 4 922 2018 282 101 89 chr12 44289571 44290877 -76966653 + RMER12 LTR ERVK 1 1322 0 4 922 226 303 77 19 chr12 44290879 44291034 -76966496 + L1MC2 LINE L1 6157 6320 -13 4 922 408 377 0 72 chr12 44291079 44291245 -76966285 + B4A SINE B4 101 254 -38 4 922 192 125 0 0 chr12 44291263 44291295 -76966235 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 922 377 314 107 8 chr12 44291411 44291533 -76965997 + ORR1E LTR MaLR 1 134 -225 4 922 233 406 52 8 chr12 44291934 44292068 -76965462 - RSINE1 SINE B4 -17 148 9 4 922 259 310 116 53 chr12 44292131 44292434 -76965096 + L1M4 LINE L1 5486 5807 -371 4 922 21 0 0 0 chr12 44292509 44292530 -76965000 + AT_rich Low_complexity Low_complexity 1 21 0 4 922 5859 114 29 13 chr12 44292597 44293504 -76964026 + Lx LINE L1 5731 6651 -3 4 922 230 333 14 0 chr12 44293901 44293973 -76963557 - ID_B1 SINE B4 -71 153 81 4 922 33 25 0 0 chr12 44294475 44294515 -76963015 + AT_rich Low_complexity Low_complexity 1 40 0 4 922 1645 148 4 8 chr12 44294894 44295159 -76962371 + L1VL1 LINE L1 3 266 -6156 4 922 907 190 11 6 chr12 44295157 44295332 -76962198 + L1Md_F LINE L1 379 554 -5965 4 922 6617 73 0 0 chr12 44295328 44296547 -76960983 + L1Md_F2 LINE L1 5018 6236 -346 4 922 21 36 0 0 chr12 44297389 44297417 -76960113 + AT_rich Low_complexity Low_complexity 1 28 0 4 922 818 249 111 62 chr12 44297449 44297818 -76959712 + Lx9 LINE L1 6760 7146 -498 4 922 255 288 24 0 chr12 44298066 44298191 -76959339 + (TA)n Simple_repeat Simple_repeat 2 129 0 4 922 2130 289 119 14 chr12 44298244 44299138 -76958392 - Lx9 LINE L1 -253 7391 6405 4 922 321 68 0 22 chr12 44299178 44299223 -76958307 - HAL1-3A_ME LINE L1 -840 2018 1975 4 922 294 164 0 0 chr12 44299224 44299279 -76958251 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 922 544 297 86 53 chr12 44299672 44299831 -76957699 + ORR1D1 LTR MaLR 3 175 -199 4 922 589 63 21 0 chr12 44299831 44299926 -76957604 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 4 922 544 297 86 53 chr12 44299926 44300011 -76957519 + ORR1D1 LTR MaLR 176 254 -120 4 922 4262 58 2 0 chr12 44300327 44300865 -76956665 - L1Md_F2 LINE L1 0 6582 6044 4 922 1125 83 0 0 chr12 44301047 44301192 -76956338 + B1_Mus1 SINE Alu 1 145 -3 4 922 270 0 0 0 chr12 44301192 44301222 -76956308 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 922 652 116 0 18 chr12 44301226 44301340 -76956190 + Lx2 LINE L1 6884 6995 -2 4 922 396 55 0 0 chr12 44301496 44301551 -76955979 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 922 465 207 57 11 chr12 44301556 44301704 -76955826 + Lx6 LINE L1 7138 7249 -211 4 115 5415 146 83 26 chr12 44301706 44302766 -76954764 + Lx3_Mus LINE L1 5890 7009 0 4 923 528 286 99 71 chr12 44304619 44304901 -76952629 + B4 SINE B4 3 292 0 4 923 316 330 76 27 chr12 44305922 44306106 -76951424 - L1ME3B LINE L1 -358 5882 5690 4 923 351 96 0 0 chr12 44306405 44306457 -76951073 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 923 249 33 0 0 chr12 44307013 44307043 -76950487 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 923 711 302 50 13 chr12 44307977 44308360 -76949170 - L1M2 LINE L1 -1679 4464 4068 4 923 21 0 0 0 chr12 44308403 44308424 -76949106 + AT_rich Low_complexity Low_complexity 1 21 0 4 923 702 136 0 0 chr12 44308724 44308856 -76948674 + (GTTTG)n Simple_repeat Simple_repeat 3 134 0 4 923 23 54 0 0 chr12 44309223 44309260 -76948270 + AT_rich Low_complexity Low_complexity 1 37 0 4 923 201 162 0 0 chr12 44309394 44309431 -76948099 + T-rich Low_complexity Low_complexity 2 38 0 4 923 440 62 0 15 chr12 44309437 44309502 -76948028 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 923 3275 221 75 44 chr12 44309563 44310409 -76947121 - RMER13B LTR ERVK -34 874 3 4 923 198 0 0 0 chr12 44310590 44310612 -76946918 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 4 923 747 272 109 64 chr12 44311222 44311371 -76946159 + MTC LTR MaLR 44 204 -217 4 923 551 122 87 24 chr12 44311371 44311497 -76946033 + L1_Mus3 LINE L1 6504 6637 -1 4 923 747 272 109 64 chr12 44311497 44311567 -76945963 + MTC LTR MaLR 205 273 -148 4 923 30 93 0 0 chr12 44312179 44312265 -76945265 + AT_rich Low_complexity Low_complexity 1 86 0 4 923 1054 93 0 0 chr12 44312517 44312656 -76944874 + Lx LINE L1 5986 6124 -530 4 923 5101 84 73 101 chr12 44312657 44313566 -76943964 + RLTR13B1 LTR ERVK 11 893 0 4 923 2785 129 79 4 chr12 44313566 44314047 -76943483 + Lx LINE L1 6132 6648 -6 4 923 244 333 62 0 chr12 44314091 44314172 -76943358 - MLT1K LTR MaLR -90 505 420 4 923 261 314 35 0 chr12 44315567 44315653 -76941877 + ID_B1 SINE B4 4 92 -132 4 923 22 35 0 0 chr12 44316517 44316546 -76940984 + AT_rich Low_complexity Low_complexity 1 29 0 4 923 386 146 12 0 chr12 44316758 44316840 -76940690 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 923 21 36 0 0 chr12 44316860 44316888 -76940642 + AT_rich Low_complexity Low_complexity 1 28 0 4 923 3127 50 131 2 chr12 44317181 44317602 -76939928 - IAPLTR2_Mm LTR ERVK 0 475 1 4 923 980 124 136 0 chr12 44317628 44317805 -76939725 - Lx3A LINE L1 -56 6925 6725 4 923 3112 258 37 18 chr12 44317803 44318581 -76938949 + Lx7 LINE L1 6625 7417 -279 4 923 227 239 146 49 chr12 44318630 44318753 -76938777 + Lx7 LINE L1 7562 7696 0 4 923 23 0 0 0 chr12 44319966 44319989 -76937541 + AT_rich Low_complexity Low_complexity 1 23 0 4 923 23 54 0 0 chr12 44320469 44320506 -76937024 + AT_rich Low_complexity Low_complexity 1 37 0 4 923 587 328 29 32 chr12 44320626 44320833 -76936697 + B3A SINE B2 1 209 -7 4 923 808 298 87 48 chr12 44320834 44320980 -76936550 + Lx8 LINE L1 6719 6850 -623 4 923 486 119 0 0 chr12 44320980 44321064 -76936466 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 923 808 298 87 48 chr12 44321064 44321078 -76936452 + Lx8 LINE L1 6851 6859 -614 4 923 1289 209 7 4 chr12 44321078 44321352 -76936178 - Lx2 LINE L1 0 6997 6723 4 923 808 298 87 48 chr12 44321352 44321648 -76935882 + Lx8 LINE L1 6860 7194 -279 4 923 723 104 0 0 chr12 44321747 44321862 -76935668 + (TAGG)n Simple_repeat Simple_repeat 4 118 0 4 923 218 157 48 0 chr12 44321863 44321946 -76935584 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 4 923 27 0 0 0 chr12 44321977 44322004 -76935526 + AT_rich Low_complexity Low_complexity 1 27 0 4 923 23 86 0 0 chr12 44322139 44322197 -76935333 + AT_rich Low_complexity Low_complexity 1 58 0 4 923 242 333 23 38 chr12 44322477 44322608 -76934922 + ORR1D2 LTR MaLR 242 370 0 4 923 30 59 0 0 chr12 44324179 44324230 -76933300 + AT_rich Low_complexity Low_complexity 1 51 0 4 923 458 33 0 16 chr12 44326156 44326217 -76931313 + (TAAAA)n Simple_repeat Simple_repeat 1 60 0 4 923 939 322 57 60 chr12 44326227 44326594 -76930936 + MTEa LTR MaLR 1 366 -13 4 923 324 0 0 0 chr12 44328128 44328164 -76929366 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4 923 219 69 0 0 chr12 44329709 44329738 -76927792 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 923 1538 200 20 56 chr12 44329879 44330234 -76927296 - RLTR15 LTR ERVK -17 342 1 4 923 453 305 72 13 chr12 44330364 44330517 -76927013 - B3 SINE B2 -46 170 9 4 923 666 334 58 19 chr12 44331741 44332077 -76925453 + ORR1D1 LTR MaLR 1 368 -2 4 923 303 49 0 0 chr12 44332383 44332424 -76925106 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 923 519 117 0 0 chr12 44332424 44332518 -76925012 + (GA)n Simple_repeat Simple_repeat 1 94 0 4 923 229 304 14 0 chr12 44333118 44333187 -76924343 - B4 SINE B4 -218 74 5 4 923 308 332 70 40 chr12 44333486 44333757 -76923773 + MER67C LTR ERV1 27 308 -403 4 923 447 19 0 0 chr12 44333944 44333996 -76923534 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 4 923 288 245 146 53 chr12 44334292 44334443 -76923087 - MER20 DNA MER1_type -45 174 10 4 923 230 164 18 18 chr12 44334721 44334777 -76922753 + B3 SINE B2 161 216 0 4 923 40 0 0 0 chr12 44335266 44335306 -76922224 + AT_rich Low_complexity Low_complexity 1 40 0 4 923 570 82 0 0 chr12 44335473 44335558 -76921972 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 923 23 54 0 0 chr12 44336018 44336055 -76921475 + AT_rich Low_complexity Low_complexity 1 37 0 4 923 459 252 93 29 chr12 44336230 44336369 -76921161 + B3A SINE B2 4 151 -47 4 923 340 218 24 82 chr12 44336358 44336428 -76921102 + B1_Mur2 SINE Alu 70 138 -11 4 923 750 101 0 0 chr12 44336428 44336537 -76920993 + (GGA)n Simple_repeat Simple_repeat 3 111 0 4 923 340 218 24 82 chr12 44336537 44336551 -76920979 + B1_Mur2 SINE Alu 139 149 0 4 923 387 0 0 0 chr12 44336704 44336747 -76920783 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 923 31 26 0 0 chr12 44336922 44336960 -76920570 + AT_rich Low_complexity Low_complexity 1 38 0 4 923 4225 179 80 22 chr12 44336974 44337835 -76919695 + Lx2B LINE L1 6086 6996 -4 4 923 599 262 74 0 chr12 44337984 44338133 -76919397 - Lx6 LINE L1 -98 7362 7203 4 923 306 312 10 31 chr12 44338135 44338231 -76919299 + RSINE1 SINE B4 5 98 -67 4 923 1139 69 0 0 chr12 44338768 44338912 -76918618 + B1_Mus1 SINE Alu 1 144 -4 5 923 243 0 0 0 chr12 44338914 44338941 -76918589 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 923 183 80 0 0 chr12 44339664 44339689 -76917841 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 923 423 317 152 29 chr12 44340037 44340346 -76917184 - L2a LINE L2 -92 3334 2988 5 923 450 0 0 0 chr12 44342225 44342275 -76915255 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 923 529 248 73 0 chr12 44342285 44342422 -76915108 - B1_Mus1 SINE Alu -1 147 1 5 923 26 30 0 0 chr12 44342896 44342929 -76914601 + AT_rich Low_complexity Low_complexity 1 33 0 5 923 399 21 0 0 chr12 44343297 44343345 -76914185 + (CAAAA)n Simple_repeat Simple_repeat 5 52 0 5 923 867 314 42 60 chr12 44344201 44344632 -76912898 + BGLII_B LTR ERVK 1 423 -18 5 923 882 256 134 83 chr12 44345129 44345585 -76911945 - RLTR16 LTR ERVK -12 493 15 5 923 1087 291 82 69 chr12 44345633 44345760 -76911770 + MYSERV16_I-int LTR ERVK 354 483 -1843 5 923 194 0 39 0 chr12 44345760 44345786 -76911744 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 923 1087 291 82 69 chr12 44345786 44346386 -76911144 + MYSERV16_I-int LTR ERVK 484 1090 -1236 5 923 6266 76 22 0 chr12 44346389 44347221 -76910309 - L1_Mus1 LINE L1 0 6567 5718 5 923 3516 216 67 71 chr12 44347309 44348461 -76909069 + MYSERV6-int LTR ERVK 7813 8959 0 5 923 584 285 94 69 chr12 44348462 44348866 -76908664 + BGLII_B LTR ERVK 1 414 -27 5 923 189 0 0 0 chr12 44349316 44349337 -76908193 + (TTA)n Simple_repeat Simple_repeat 1 21 0 5 923 22 0 0 0 chr12 44349651 44349673 -76907857 + AT_rich Low_complexity Low_complexity 1 22 0 5 923 1644 167 56 132 chr12 44349757 44349842 -76907688 - RLTR20D LTR ERVK 0 568 462 5 923 432 0 0 0 chr12 44349842 44349890 -76907640 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 923 1644 167 56 132 chr12 44349890 44350197 -76907333 - RLTR20D LTR ERVK -107 461 207 5 923 201 39 0 0 chr12 44350197 44350223 -76907307 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 923 282 376 0 0 chr12 44350475 44350589 -76906941 + B1F SINE Alu 1 114 -6 5 923 552 286 45 7 chr12 44350841 44350996 -76906534 + RSINE1 SINE B4 5 165 0 5 923 274 352 6 6 chr12 44352412 44352589 -76904941 + L1M2 LINE L1 5111 5287 -856 5 923 313 312 87 31 chr12 44353629 44353990 -76903540 + L1M4b LINE L1 2189 2554 -4548 5 923 252 291 218 22 chr12 44354575 44354754 -76902776 + MLT-int LTR MaLR 12 225 -1510 5 923 225 0 0 0 chr12 44354776 44354801 -76902729 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 5 923 5205 170 41 9 chr12 44354802 44355803 -76901727 - Lx3C LINE L1 -18 6958 5926 5 923 2202 178 123 5 chr12 44355805 44356252 -76901278 - RMER17B LTR ERVK -4 954 455 5 923 7586 153 13 2 chr12 44356252 44357573 -76899957 - L1_Mur1 LINE L1 -456 5430 4096 5 923 233 333 46 26 chr12 44357591 44357742 -76899788 + MLT-int LTR MaLR 286 439 -1296 5 923 1947 201 28 23 chr12 44358742 44359134 -76898396 - ORR1B1 LTR MaLR 0 394 1 5 923 21 36 0 0 chr12 44359600 44359628 -76897902 + AT_rich Low_complexity Low_complexity 1 28 0 5 923 458 33 17 0 chr12 44359882 44359942 -76897588 + (TTTA)n Simple_repeat Simple_repeat 3 63 0 5 923 276 30 0 0 chr12 44360290 44360323 -76897207 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5 923 2182 168 11 3 chr12 44360358 44360739 -76896791 + Lx2 LINE L1 6614 6997 0 5 923 601 146 0 10 chr12 44362126 44362230 -76895300 - L1_Mus4 LINE L1 -593 6043 5941 5 923 3378 138 30 8 chr12 44362231 44362781 -76894749 + L1_Mus4 LINE L1 6047 6574 -62 5 923 564 350 81 49 chr12 44362809 44363217 -76894313 - MT2A LTR ERVL -111 422 2 5 923 3533 97 13 33 chr12 44363297 44363818 -76893712 + Lx3A LINE L1 6462 6972 -9 5 923 237 362 30 30 chr12 44364523 44364654 -76892876 + L2b LINE L2 3233 3363 -12 5 923 420 290 80 0 chr12 44365541 44365679 -76891851 - RMER5 LTR ERV1 -70 464 316 5 923 429 276 64 37 chr12 44367030 44367218 -76890312 - MER3 DNA MER1_type -16 193 1 5 923 22 80 0 0 chr12 44367349 44367399 -76890131 + AT_rich Low_complexity Low_complexity 1 50 0 5 923 298 217 42 32 chr12 44367501 44367596 -76889934 - RMER5 LTR ERV1 -25 509 414 5 923 558 199 91 8 chr12 44367719 44367851 -76889679 - Lx6 LINE L1 -7 7453 7311 5 923 512 71 22 6 chr12 44367843 44367935 -76889595 + L1_Mus1 LINE L1 6490 6582 0 5 923 1771 266 50 5 chr12 44367936 44367976 -76889554 - Lx6 LINE L1 -136 7324 7274 5 923 249 33 0 0 chr12 44367976 44368006 -76889524 + (TATAA)n Simple_repeat Simple_repeat 5 34 0 5 923 1771 266 50 5 chr12 44368006 44368381 -76889149 - Lx6 LINE L1 -187 7273 6891 5 923 2363 152 40 9 chr12 44368387 44368812 -76888718 + ORR1B2-int LTR MaLR 1055 1492 -17 5 923 738 181 49 0 chr12 44368825 44368969 -76888561 + ORR1B2 LTR MaLR 1 151 -216 5 923 744 50 0 0 chr12 44368969 44369070 -76888460 + (TC)n Simple_repeat Simple_repeat 2 102 0 5 923 627 161 59 0 chr12 44369070 44369188 -76888342 + ORR1B2 LTR MaLR 243 367 0 5 923 1167 181 8 46 chr12 44369188 44369426 -76888104 - Lx6 LINE L1 -565 6895 6667 5 923 33 25 0 0 chr12 44369433 44369473 -76888057 + AT_rich Low_complexity Low_complexity 1 40 0 5 923 185 299 115 13 chr12 44369552 44369630 -76887900 - MIRc SINE MIR -31 237 152 5 923 201 268 0 14 chr12 44369823 44369895 -76887635 + A-rich Low_complexity Low_complexity 4 74 0 5 923 576 342 53 12 chr12 44369907 44370150 -76887380 + B4A SINE B4 40 292 0 5 923 24 32 0 0 chr12 44370191 44370222 -76887308 + AT_rich Low_complexity Low_complexity 1 31 0 5 923 616 324 59 113 chr12 44370384 44370445 -76887085 - MLT1A0 LTR MaLR 0 365 309 5 923 1293 229 107 38 chr12 44370445 44370839 -76886691 + MTC LTR MaLR 1 421 0 5 923 616 324 59 113 chr12 44370839 44371149 -76886381 - MLT1A0 LTR MaLR -57 308 14 5 923 444 91 0 0 chr12 44371731 44371797 -76885733 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 923 21 0 0 0 chr12 44372526 44372547 -76884983 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 3650 134 54 43 chr12 44373036 44373707 -76883823 + RLTR33 LTR ERVK 1 678 0 5 923 285 325 12 12 chr12 44373799 44373883 -76883647 - ORR1E-int LTR MaLR -502 1078 995 5 923 1097 97 78 6 chr12 44373909 44374075 -76883455 + B2_Mm2 SINE B2 3 180 -15 5 923 1477 287 44 97 chr12 44374078 44374297 -76883233 - ORR1E-int LTR MaLR -605 765 565 5 923 1968 188 78 51 chr12 44374297 44374746 -76882784 + RMER6B LTR ERVK 1 461 0 5 923 1477 297 58 87 chr12 44374746 44375292 -76882238 - ORR1E-int LTR MaLR -806 564 2 5 923 683 336 20 20 chr12 44375347 44375602 -76881928 - ORR1E LTR MaLR -120 264 1 5 923 1072 277 135 0 chr12 44375730 44376048 -76881482 + MTD LTR MaLR 43 403 -16 5 923 875 156 6 0 chr12 44376136 44376296 -76881234 + CT-rich Low_complexity Low_complexity 1 161 0 5 923 2096 206 11 19 chr12 44376296 44376766 -76880764 - Lx LINE L1 -9 6645 6180 5 923 1293 227 62 20 chr12 44377433 44377788 -76879742 - ORR1D1 LTR MaLR -4 370 1 5 923 261 0 0 0 chr12 44379147 44379176 -76878354 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 923 465 173 39 4 chr12 44379394 44379653 -76877877 + (TA)n Simple_repeat Simple_repeat 1 268 0 5 923 371 20 39 0 chr12 44379739 44379790 -76877740 + (CAAAAA)n Simple_repeat Simple_repeat 6 58 0 5 923 278 115 0 16 chr12 44379831 44379893 -76877637 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 5 923 980 99 7 0 chr12 44379895 44380037 -76877493 - B1_Mus1 SINE Alu -5 143 1 5 923 543 292 120 53 chr12 44381403 44381819 -76875711 + L1MEg LINE L1 234 677 -5407 5 923 768 145 0 0 chr12 44382253 44382384 -76875146 + (TATATG)n Simple_repeat Simple_repeat 2 132 0 5 923 1058 101 0 0 chr12 44382572 44382720 -76874810 + B1_Mus1 SINE Alu 1 148 0 5 923 7710 116 44 9 chr12 44382781 44384805 -76872725 + L1_Mus3 LINE L1 4520 6629 -9 5 923 22 56 0 0 chr12 44385037 44385073 -76872457 + AT_rich Low_complexity Low_complexity 1 36 0 5 923 5115 175 47 22 chr12 44385079 44386000 -76871530 - L1_Mur2 LINE L1 -84 5793 4847 5 923 261 0 0 0 chr12 44386000 44386029 -76871501 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 923 5115 175 47 22 chr12 44386029 44386174 -76871356 - L1_Mur2 LINE L1 -1031 4846 4701 5 923 4938 250 45 24 chr12 44386162 44386368 -76871162 + Lx5 LINE L1 5768 5978 -1072 5 923 1793 180 21 48 chr12 44386368 44386788 -76870742 + RLTR9E LTR ERVK 1 409 0 5 923 4938 250 45 24 chr12 44386788 44387082 -76870448 + Lx5 LINE L1 5979 6271 -779 5 923 3897 66 26 4 chr12 44387082 44387583 -76869947 - RLTR1B LTR ERV1 0 512 1 5 923 4938 250 45 24 chr12 44387583 44388333 -76869197 + Lx5 LINE L1 6272 7046 -4 5 923 3611 141 13 22 chr12 44388371 44388967 -76868563 + Lx2 LINE L1 6406 6996 -1 5 923 271 172 125 0 chr12 44389093 44389157 -76868373 - MLT1-int LTR MaLR -1286 85 14 5 923 22 56 0 0 chr12 44389471 44389507 -76868023 + AT_rich Low_complexity Low_complexity 1 36 0 5 923 195 33 60 90 chr12 44390185 44390252 -76867278 + A-rich Low_complexity Low_complexity 4 68 0 5 923 1257 99 32 28 chr12 44390631 44390849 -76866681 + L1_Mus4 LINE L1 6416 6634 -2 5 923 346 288 102 25 chr12 44390883 44391079 -76866451 + L1ME3 LINE L1 5877 6087 -75 5 923 217 313 83 42 chr12 44391257 44391377 -76866153 - MIRc SINE MIR -62 206 82 5 923 662 263 170 110 chr12 44391451 44391904 -76865626 + RLTR18B LTR ERVK 1 480 -32 5 923 205 51 0 49 chr12 44391910 44391951 -76865579 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 923 1937 130 28 3 chr12 44391964 44392288 -76865242 - Lx LINE L1 -14 6640 6309 5 923 495 306 81 5 chr12 44393226 44393423 -76864107 + ID_B1 SINE B4 4 215 -9 5 923 226 191 21 0 chr12 44393424 44393471 -76864059 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 5 923 249 281 20 59 chr12 44393717 44393819 -76863711 + PB1D9 SINE Alu 10 107 -13 5 923 270 81 0 0 chr12 44393826 44393863 -76863667 + (CAAT)n Simple_repeat Simple_repeat 2 38 0 5 923 248 232 0 0 chr12 44394114 44394170 -76863360 + A-rich Low_complexity Low_complexity 3 58 0 5 923 282 220 64 1 chr12 44394816 44394911 -76862619 + Lx3A LINE L1 6889 7009 0 5 923 28 48 0 0 chr12 44395099 44395141 -76862389 + AT_rich Low_complexity Low_complexity 1 42 0 5 923 22 35 0 0 chr12 44395467 44395496 -76862034 + AT_rich Low_complexity Low_complexity 1 29 0 5 923 21 0 0 0 chr12 44395907 44395928 -76861602 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 233 319 78 21 chr12 44397034 44397175 -76860355 + MER5A1 DNA MER1_type 12 160 -6 5 923 219 69 0 0 chr12 44397219 44397248 -76860282 + (TTC)n Simple_repeat Simple_repeat 2 30 0 5 923 990 78 0 8 chr12 44397248 44397378 -76860152 - B1_Mus1 SINE Alu -15 133 5 5 923 285 328 123 45 chr12 44398221 44398464 -76859066 - LTR16A1 LTR ERVL -12 444 183 6 923 7396 108 1 10 chr12 44399950 44401099 -76856431 - Lx LINE L1 -13 6641 5503 6 923 192 97 0 0 chr12 44401911 44401942 -76855588 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 923 23 0 0 0 chr12 44403354 44403377 -76854153 + AT_rich Low_complexity Low_complexity 1 23 0 6 923 267 103 0 0 chr12 44404417 44404456 -76853074 + (A)n Simple_repeat Simple_repeat 1 39 0 6 923 534 330 95 74 chr12 44404469 44404827 -76852703 - MTD LTR MaLR -39 380 4 6 923 517 335 157 36 chr12 44404829 44405414 -76852116 - MTC-int LTR MaLR -1 1579 573 6 923 213 39 0 0 chr12 44405502 44405528 -76852002 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 923 285 195 95 24 chr12 44406664 44406748 -76850782 + RLTR25B LTR ERVK 420 509 -519 6 923 754 56 28 0 chr12 44406681 44406788 -76850742 + B1_Mus1 SINE Alu 39 148 0 6 923 260 83 26 53 chr12 44406788 44406864 -76850666 + (CAAA)n Simple_repeat Simple_repeat 3 76 0 6 923 554 45 0 0 chr12 44407019 44407086 -76850444 - Lx3_Mus LINE L1 -367 6642 6576 6 923 1672 136 191 40 chr12 44407059 44407435 -76850095 + Lx3_Mus LINE L1 6577 7009 0 6 923 21 36 0 0 chr12 44407757 44407785 -76849745 + AT_rich Low_complexity Low_complexity 1 28 0 6 923 302 229 0 35 chr12 44408099 44408185 -76849345 - Lx9 LINE L1 -1 7643 7561 6 923 457 148 31 8 chr12 44409079 44409208 -76848322 + (TA)n Simple_repeat Simple_repeat 2 133 0 6 923 312 184 18 72 chr12 44409528 44409639 -76847891 + A-rich Low_complexity Low_complexity 2 106 0 6 923 3022 288 36 26 chr12 44409689 44410759 -76846771 - Lx7 LINE L1 -445 7251 6171 6 923 1594 265 58 56 chr12 44410759 44411259 -76846271 - RMER19C LTR ERVK 0 611 111 6 923 265 250 0 0 chr12 44411278 44411334 -76846196 - Lx7 LINE L1 -1522 6174 6119 6 923 213 159 0 22 chr12 44412609 44412654 -76844876 + A-rich Low_complexity Low_complexity 4 47 0 6 923 198 365 41 81 chr12 44412797 44412994 -76844536 + L2c LINE L2 3018 3206 -181 6 923 285 167 0 0 chr12 44413133 44413187 -76844343 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 6 923 2098 235 29 2 chr12 44413458 44413905 -76843625 - Lx5 LINE L1 -3 7047 6589 6 923 396 0 0 0 chr12 44413941 44413985 -76843545 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 923 438 36 0 0 chr12 44413985 44414040 -76843490 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 923 6530 152 41 7 chr12 44414726 44415856 -76841674 + Lx3B LINE L1 5800 6967 -6 6 923 180 0 0 0 chr12 44415863 44415883 -76841647 + (TAA)n Simple_repeat Simple_repeat 1 20 0 6 923 551 249 85 51 chr12 44416135 44416394 -76841136 + MTC LTR MaLR 64 421 0 6 923 261 226 19 0 chr12 44416835 44416888 -76840642 - PB1D9 SINE Alu -59 61 8 6 923 28 29 0 0 chr12 44417286 44417321 -76840209 + AT_rich Low_complexity Low_complexity 1 35 0 6 923 14315 161 22 13 chr12 44417373 44420134 -76837396 + Lx LINE L1 3261 6025 -629 6 923 6130 63 14 31 chr12 44420134 44420970 -76836560 - RLTR13B2 LTR ERVK 0 822 1 6 923 9313 131 21 21 chr12 44420984 44422517 -76835013 - ETnERV3-int LTR ERVK -28 5780 4248 6 923 257 284 117 10 chr12 44423897 44424000 -76833530 - RLTR21 LTR ERVK 0 1572 1459 6 923 554 109 11 0 chr12 44424099 44424191 -76833339 + (TC)n Simple_repeat Simple_repeat 1 93 0 6 923 533 115 0 10 chr12 44424206 44424303 -76833227 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 923 3305 184 57 14 chr12 44424305 44425003 -76832527 - RMER12B LTR ERVK -225 1179 452 6 923 2973 58 17 17 chr12 44425004 44425407 -76832123 - L1Md_F3 LINE L1 0 6584 6182 6 923 1122 23 0 0 chr12 44425407 44425536 -76831994 + L1Md_F3 LINE L1 6019 6147 -437 6 923 1670 244 104 2 chr12 44425536 44425959 -76831571 - RMER12B LTR ERVK -938 466 1 6 923 1270 275 66 8 chr12 44425977 44426373 -76831157 - MTD LTR MaLR 0 419 1 6 923 345 214 0 28 chr12 44426374 44426446 -76831084 - RMER12B LTR ERVK -1153 251 182 6 923 200 281 77 15 chr12 44427704 44427769 -76829761 - L2b LINE L2 -97 3278 3210 6 923 25 65 0 0 chr12 44429559 44429605 -76827925 + AT_rich Low_complexity Low_complexity 1 46 0 6 923 383 288 130 2 chr12 44429929 44430092 -76827438 - ORR1D1 LTR MaLR -3 376 191 6 923 4389 55 41 3 chr12 44430099 44430664 -76826866 + L1Md_F3 LINE L1 5985 6570 -14 6 923 5900 102 35 1 chr12 44430794 44432276 -76825254 - L1Md_F LINE L1 -3815 2068 534 6 923 314 200 0 0 chr12 44432266 44432326 -76825204 - L1Md_F LINE L1 -5980 539 480 6 923 1131 56 0 7 chr12 44432347 44432491 -76825039 - B1_Mus1 SINE Alu -1 147 5 6 923 28 0 0 0 chr12 44432846 44432874 -76824656 + AT_rich Low_complexity Low_complexity 1 28 0 6 923 311 154 15 0 chr12 44433199 44433264 -76824266 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 923 297 0 0 0 chr12 44433349 44433382 -76824148 + (CATA)n Simple_repeat Simple_repeat 2 34 0 6 924 22 70 0 0 chr12 44433938 44433981 -76823549 + AT_rich Low_complexity Low_complexity 1 43 0 6 924 24 32 0 0 chr12 44434258 44434289 -76823241 + AT_rich Low_complexity Low_complexity 1 31 0 6 924 1034 116 7 0 chr12 44434579 44434725 -76822805 + B1_Mus1 SINE Alu 1 147 -1 6 924 249 183 0 0 chr12 44434740 44434800 -76822730 + A-rich Low_complexity Low_complexity 1 60 0 6 924 1001 324 55 9 chr12 44434937 44435280 -76822250 + MTE2b LTR MaLR 1 359 -20 6 924 377 301 125 0 chr12 44436215 44436351 -76821179 + ID_B1 SINE B4 69 221 -3 6 924 5350 13 0 0 chr12 44436485 44437102 -76820428 + L1Md_A LINE L1 4970 5586 -297 6 924 8787 15 0 0 chr12 44437102 44438098 -76819432 + L1Md_A LINE L1 5587 6582 0 6 924 21 0 0 0 chr12 44438307 44438328 -76819202 + AT_rich Low_complexity Low_complexity 1 21 0 6 924 4852 107 15 61 chr12 44438448 44439296 -76818234 + RMER17D2 LTR ERVK 1 809 0 6 924 375 342 111 31 chr12 44439313 44439699 -76817831 + L1M5 LINE L1 4979 5395 -751 6 924 30 0 0 0 chr12 44440262 44440292 -76817238 + AT_rich Low_complexity Low_complexity 1 30 0 6 924 386 268 13 159 chr12 44441395 44441546 -76815984 - MTE2b LTR MaLR -231 148 20 6 924 21 57 0 0 chr12 44442903 44442938 -76814592 + AT_rich Low_complexity Low_complexity 1 35 0 6 924 650 161 0 31 chr12 44443482 44443596 -76813934 - Lx2B LINE L1 -5 6995 6884 6 924 396 0 0 0 chr12 44443596 44443640 -76813890 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 924 650 161 0 31 chr12 44443640 44443653 -76813877 - Lx2B LINE L1 -117 6883 6872 6 924 259 310 10 10 chr12 44443718 44443819 -76813711 + GA-rich Low_complexity Low_complexity 2 102 0 6 924 37985 30 0 0 chr12 44444299 44450772 -76806758 - L1Md_T LINE L1 -2 6583 14 6 924 721 73 90 18 chr12 44451078 44451189 -76806341 + B1_Mus1 SINE Alu 30 148 0 6 924 21 89 0 0 chr12 44451416 44451472 -76806058 + AT_rich Low_complexity Low_complexity 1 56 0 6 924 318 325 23 47 chr12 44451625 44451754 -76805776 + L1MA5 LINE L1 5144 5269 -874 6 924 252 207 41 8 chr12 44451758 44451880 -76805650 + (TA)n Simple_repeat Simple_repeat 2 127 0 6 924 280 327 68 28 chr12 44451918 44452227 -76805303 + L1MA5 LINE L1 5352 5683 -473 6 924 369 301 36 1 chr12 44452344 44452562 -76804968 + L1MA5 LINE L1 6063 6300 0 6 924 1892 184 22 35 chr12 44452998 44453365 -76804165 - ORR1B1 LTR MaLR -15 379 18 6 924 429 20 0 0 chr12 44453375 44453425 -76804105 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 924 347 376 0 0 chr12 44453583 44453732 -76803798 + B1_Mur1 SINE Alu 1 149 0 6 924 22 56 0 0 chr12 44453770 44453806 -76803724 + AT_rich Low_complexity Low_complexity 1 36 0 6 924 222 303 51 26 chr12 44453876 44453954 -76803576 - ID4_ SINE ID 0 83 4 6 924 760 279 14 9 chr12 44454115 44454325 -76803205 + B3 SINE B2 4 214 -2 6 924 491 256 70 0 chr12 44454580 44454709 -76802821 + MTE2a LTR MaLR 242 379 0 6 924 23 0 0 0 chr12 44454846 44454869 -76802661 + AT_rich Low_complexity Low_complexity 1 23 0 6 924 387 0 0 0 chr12 44455944 44455987 -76801543 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 924 524 15 15 0 chr12 44455998 44456063 -76801467 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 924 202 186 42 28 chr12 44457050 44457122 -76800408 + (TATAA)n Simple_repeat Simple_repeat 2 74 0 6 924 28 0 0 0 chr12 44457248 44457276 -76800254 + AT_rich Low_complexity Low_complexity 1 28 0 6 924 7301 101 28 13 chr12 44457276 44458387 -76799143 - Lx3_Mus LINE L1 -11 6998 5871 6 924 2134 86 59 3 chr12 44458387 44458691 -76798839 + Lx3_Mus LINE L1 5551 5871 -15 6 924 808 103 0 29 chr12 44459145 44459285 -76798245 + (GAAA)n Simple_repeat Simple_repeat 4 139 0 6 924 204 118 0 29 chr12 44459523 44459558 -76797972 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 6 924 7314 147 52 5 chr12 44459563 44461071 -76796459 - Lx3B LINE L1 -4 6969 5385 6 924 387 0 0 0 chr12 44461081 44461124 -76796406 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 924 7460 74 17 2 chr12 44461128 44462743 -76794787 - L1Md_F2 LINE L1 -1 6581 4938 6 924 25 0 0 0 chr12 44463292 44463317 -76794213 + AT_rich Low_complexity Low_complexity 1 25 0 6 924 1448 215 45 3 chr12 44463411 44463719 -76793811 + Lx2B LINE L1 6677 6997 -3 6 924 21 57 0 0 chr12 44464203 44464238 -76793292 + AT_rich Low_complexity Low_complexity 1 35 0 6 924 283 328 134 25 chr12 44464398 44464422 -76793108 + B1F2 SINE Alu 7 138 -11 6 924 408 316 21 0 chr12 44464422 44464517 -76793013 + ID_B1 SINE B4 117 213 -11 6 924 342 129 0 0 chr12 44464557 44464619 -76792911 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 924 3254 229 102 18 chr12 44466383 44467283 -76790247 + Lx9 LINE L1 6669 7644 0 6 924 195 315 21 21 chr12 44467396 44467490 -76790040 + L3 LINE CR1 141 234 -4255 6 924 21 0 0 0 chr12 44468490 44468511 -76789019 + AT_rich Low_complexity Low_complexity 1 21 0 6 924 264 350 98 22 chr12 44469336 44469520 -76788010 + MIRb SINE MIR 49 246 -22 6 924 315 319 87 0 chr12 44469640 44469778 -76787752 + L1MCb LINE L1 568 717 -5328 6 924 1696 191 26 49 chr12 44469896 44470281 -76787249 + ORR1C1 LTR MaLR 1 376 -2 6 924 186 43 0 0 chr12 44470513 44470536 -76786994 + (TA)n Simple_repeat Simple_repeat 1 23 0 7 924 633 14 0 0 chr12 44471099 44471173 -76786357 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 924 31 26 0 0 chr12 44471357 44471395 -76786135 + AT_rich Low_complexity Low_complexity 1 38 0 7 924 760 321 67 37 chr12 44471634 44472446 -76785084 + L1MCb LINE L1 2528 3363 -3201 6 924 22 0 0 0 chr12 44472626 44472648 -76784882 + AT_rich Low_complexity Low_complexity 1 22 0 7 924 1374 237 74 3 chr12 44472999 44473325 -76784205 - MTC LTR MaLR -2 419 71 7 924 1158 98 35 0 chr12 44473326 44473499 -76784031 - L1_Mus1 LINE L1 -1 6566 6388 7 924 5481 77 3 1 chr12 44473499 44474638 -76782892 - L1_Mus1 LINE L1 -341 6226 5086 7 924 291 236 203 24 chr12 44476590 44476736 -76780794 - MIRb SINE MIR -65 203 29 7 924 1334 232 91 42 chr12 44477541 44477924 -76779606 + MTD LTR MaLR 18 419 0 7 924 21 0 0 0 chr12 44478183 44478204 -76779326 + AT_rich Low_complexity Low_complexity 1 21 0 7 924 455 49 0 0 chr12 44478235 44478296 -76779234 - B2_Mm2 SINE B2 -134 61 1 7 924 4788 38 0 2 chr12 44478296 44478871 -76778659 + L1Md_F3 LINE L1 6010 6583 -1 7 924 260 185 93 0 chr12 44479308 44479362 -76778168 - MTE2b LTR MaLR -262 117 59 7 924 24 32 0 0 chr12 44479580 44479611 -76777919 + AT_rich Low_complexity Low_complexity 1 31 0 7 924 629 380 33 8 chr12 44480634 44480995 -76776535 + MTEa LTR MaLR 1 370 -9 7 924 369 43 0 0 chr12 44481268 44481315 -76776215 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 924 21 0 0 0 chr12 44481580 44481601 -76775929 + AT_rich Low_complexity Low_complexity 1 21 0 7 924 335 312 0 35 chr12 44482107 44482223 -76775307 + PB1D10 SINE Alu 4 115 -2 7 924 644 93 10 0 chr12 44482443 44482540 -76774990 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 7 924 1079 322 81 12 chr12 44482633 44483064 -76774466 - MT2A LTR ERVL -72 461 1 7 924 437 296 64 7 chr12 44483105 44483403 -76774127 + L1MB8 LINE L1 5219 5531 -653 7 924 609 276 122 34 chr12 44484032 44484468 -76773062 + L1MB8 LINE L1 5676 6149 -29 7 924 4512 158 48 16 chr12 44485218 44486053 -76771477 - Lx2B LINE L1 -5 6995 6134 7 924 8936 119 13 16 chr12 44486197 44488537 -76768993 - Lx3A LINE L1 0 6981 4654 7 924 759 93 0 0 chr12 44488538 44488635 -76768895 - L1_Mus3 LINE L1 -429 6209 6113 7 924 897 112 0 36 chr12 44488616 44488637 -76768893 - L1Md_F3 LINE L1 -864 5720 5704 7 924 2944 93 7 12 chr12 44488637 44489062 -76768468 + L1_Mus3 LINE L1 6201 6623 -15 7 924 4303 67 0 0 chr12 44489062 44489615 -76767915 - L1Md_F2 LINE L1 -881 5703 5151 7 924 1310 38 0 0 chr12 44489615 44489773 -76767757 + L1Md_F2 LINE L1 5707 5864 -718 7 924 5839 118 28 73 chr12 44489775 44491712 -76765818 - Lx3A LINE L1 -3850 2036 205 7 924 233 350 76 28 chr12 44491723 44491867 -76765663 - MLT1A1 LTR MaLR -2 406 256 7 924 213 299 96 64 chr12 44491885 44492010 -76765520 + B4A SINE B4 41 169 -123 7 924 262 260 178 0 chr12 44491951 44492024 -76765506 + PB1D9 SINE Alu 15 100 -20 7 924 328 308 37 0 chr12 44492303 44492410 -76765120 - L1MC4 LINE L1 -463 7419 7309 7 924 436 335 68 5 chr12 44492560 44492779 -76764751 - L1MC4 LINE L1 -1032 7010 6778 7 924 732 287 162 52 chr12 44492943 44493215 -76764315 - ORR1E LTR MaLR -6 353 52 7 924 613 284 18 12 chr12 44494616 44494780 -76762750 + RSINE1 SINE B4 1 165 0 7 924 2039 159 58 25 chr12 44496238 44496632 -76760898 - MTB_Mm LTR MaLR 0 407 1 7 924 1794 93 4 8 chr12 44497195 44497455 -76760075 - L1_Mus2 LINE L1 0 6566 6308 7 924 195 42 0 0 chr12 44499055 44499079 -76758451 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 924 414 298 43 94 chr12 44499366 44499737 -76757793 + L1M2 LINE L1 2241 2592 -4257 7 924 7799 133 55 10 chr12 44500268 44502291 -76755239 + L1_Mur1 LINE L1 3 2393 -3493 1 924 236 250 69 20 chr12 44502946 44503048 -76754482 + L1MA8 LINE L1 6180 6286 -5 2 924 35 24 0 0 chr12 44503077 44503119 -76754411 + AT_rich Low_complexity Low_complexity 1 42 0 3 924 21 0 0 0 chr12 44503161 44503182 -76754348 + AT_rich Low_complexity Low_complexity 1 21 0 4 924 692 262 73 10 chr12 44503424 44503618 -76753912 + B3 SINE B2 2 216 0 5 924 1036 280 79 4 chr12 44503845 44504125 -76753405 - MTE2b LTR MaLR -11 368 68 6 924 1506 282 52 11 chr12 44504168 44504606 -76752924 - MTE-int LTR MaLR -1 1579 1124 7 924 4830 178 54 10 chr12 44504641 44505635 -76751895 - Lx2B LINE L1 -4 6996 5959 8 924 1674 181 3 0 chr12 44505719 44506045 -76751485 - L1_Mur1 LINE L1 -474 5412 5086 9 924 3737 189 27 17 chr12 44506035 44506562 -76750968 + Lx LINE L1 5826 6348 -306 1 924 216 0 0 0 chr12 44506562 44506586 -76750944 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 924 696 24 0 0 chr12 44506586 44506667 -76750863 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 924 3737 189 27 17 chr12 44506667 44506839 -76750691 + Lx LINE L1 6349 6532 -122 1 924 393 293 135 67 chr12 44507375 44507642 -76749888 - RLTR26 LTR ERVK -189 453 169 1 924 22 70 0 0 chr12 44508840 44508883 -76748647 + AT_rich Low_complexity Low_complexity 1 43 0 1 924 194 194 0 15 chr12 44509874 44509942 -76747588 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 924 281 356 76 0 chr12 44510100 44510232 -76747298 - ID_B1 SINE B4 -1 223 82 1 924 360 119 0 0 chr12 44510708 44510767 -76746763 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 924 882 189 0 0 chr12 44510822 44510997 -76746533 + GA-rich Low_complexity Low_complexity 4 178 0 1 924 22 35 0 0 chr12 44511320 44511349 -76746181 + AT_rich Low_complexity Low_complexity 1 29 0 1 924 370 343 85 74 chr12 44511639 44512004 -76745526 + MER57E1 LTR ERV1 4 372 0 2 924 210 309 0 42 chr12 44512521 44512592 -76744938 + L2 LINE L2 2370 2437 -982 2 924 904 317 63 43 chr12 44512617 44512637 -76744893 - MTE2b LTR MaLR 0 379 362 2 924 3477 92 10 4 chr12 44512637 44513127 -76744403 - L1_Mus3 LINE L1 -2 6636 6144 2 924 904 317 63 43 chr12 44513127 44513455 -76744075 - MTE2b LTR MaLR -18 361 24 2 924 901 153 60 5 chr12 44513455 44513639 -76743891 + B2_Mm2 SINE B2 2 195 0 2 924 807 126 0 0 chr12 44513642 44513769 -76743761 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 2 924 1901 170 19 3 chr12 44513803 44514162 -76743368 + Lx3_Mus LINE L1 4923 5287 -590 2 924 1269 148 35 11 chr12 44514164 44514424 -76743106 + Lx3_Mus LINE L1 5908 6173 -836 2 924 504 100 0 0 chr12 44514426 44514506 -76743024 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 2 924 5680 103 24 25 chr12 44514546 44515433 -76742097 + Lx3_Mus LINE L1 6123 7008 -1 2 924 3256 92 0 5 chr12 44515441 44515913 -76741617 + L1_Mus1 LINE L1 6117 6567 0 2 924 6423 130 24 40 chr12 44515954 44517304 -76740226 + Lx LINE L1 5312 6654 0 3 924 537 268 91 13 chr12 44517715 44517946 -76739584 + MER67C LTR ERV1 427 675 -36 3 924 25 31 0 0 chr12 44518980 44519012 -76738518 + AT_rich Low_complexity Low_complexity 1 32 0 3 924 7037 56 2 0 chr12 44519937 44520814 -76736716 - L1Md_F2 LINE L1 -1 6581 5703 3 924 387 343 37 65 chr12 44520982 44521197 -76736333 + MTEa LTR MaLR 171 379 0 3 924 205 167 0 0 chr12 44521417 44521453 -76736077 + GA-rich Low_complexity Low_complexity 1 36 0 3 924 22 35 0 0 chr12 44522238 44522267 -76735263 + AT_rich Low_complexity Low_complexity 1 29 0 3 924 22 80 0 0 chr12 44522337 44522387 -76735143 + AT_rich Low_complexity Low_complexity 1 50 0 3 924 3496 148 35 38 chr12 44523214 44523873 -76733657 + Lx2 LINE L1 6340 6996 -1 3 924 7539 174 34 11 chr12 44523897 44524592 -76732938 + Lx2B LINE L1 5329 6036 -964 3 924 651 60 0 0 chr12 44524592 44524676 -76732854 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 4 924 7539 171 38 17 chr12 44524676 44524979 -76732551 + Lx2B LINE L1 6037 6336 -664 3 924 372 32 16 31 chr12 44524987 44525051 -76732479 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 4 924 1114 76 0 7 chr12 44525051 44525188 -76732342 - B1_Mus2 SINE Alu -9 138 2 4 924 7539 171 38 17 chr12 44525188 44525828 -76731702 + Lx2B LINE L1 6337 6994 -6 3 924 270 160 0 0 chr12 44526167 44526217 -76731313 + GA-rich Low_complexity Low_complexity 1 50 0 4 924 559 334 47 6 chr12 44526349 44526710 -76730820 + L1M3 LINE L1 2110 2485 -3655 4 924 2565 65 9 0 chr12 44526724 44527060 -76730470 - L1_Mus4 LINE L1 -563 6073 5735 4 924 3552 130 2 2 chr12 44527060 44527607 -76729923 + L1_Mus4 LINE L1 6082 6628 -8 4 924 306 250 125 0 chr12 44527630 44527742 -76729788 + L1M3 LINE L1 2499 2624 -3522 4 924 29 0 0 0 chr12 44528279 44528308 -76729222 + AT_rich Low_complexity Low_complexity 1 29 0 4 924 21 0 0 0 chr12 44528606 44528627 -76728903 + AT_rich Low_complexity Low_complexity 1 21 0 4 924 22 56 0 0 chr12 44529974 44530010 -76727520 + AT_rich Low_complexity Low_complexity 1 36 0 4 924 340 314 79 31 chr12 44530157 44530384 -76727146 + L1M3 LINE L1 5508 5745 -434 4 924 834 214 11 6 chr12 44530893 44531072 -76726458 + Lx5 LINE L1 6253 6432 -618 4 924 345 328 34 0 chr12 44531075 44531194 -76726336 - MT2A LTR ERVL -92 509 387 5 924 22 80 0 0 chr12 44531423 44531473 -76726057 + AT_rich Low_complexity Low_complexity 1 50 0 5 924 201 129 0 0 chr12 44531498 44531529 -76726001 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 924 471 256 68 0 chr12 44531532 44531665 -76725865 - MT2A LTR ERVL -391 142 1 5 924 1961 309 51 11 chr12 44531669 44532393 -76725137 - Lx7 LINE L1 -753 6943 6191 5 924 333 273 101 11 chr12 44532735 44532824 -76724706 - RMER4B LTR ERVK -139 446 350 5 924 1161 66 26 0 chr12 44532881 44533032 -76724498 + L1Md_F2 LINE L1 5432 5586 -297 5 924 7955 42 18 0 chr12 44533032 44533997 -76723533 + L1Md_F2 LINE L1 5587 6568 -14 5 924 1881 40 0 0 chr12 44533996 44534223 -76723307 + L1Md_A LINE L1 6353 6579 -3 5 924 1544 211 49 3 chr12 44534223 44534547 -76722983 - RodERV21-int LTR ERV1 -213 4778 4440 5 924 929 267 79 84 chr12 44534762 44535142 -76722388 - RLTR19-int LTR ERVK -1757 4380 4003 5 924 2142 163 26 23 chr12 44535546 44535930 -76721600 + ORR1B1 LTR MaLR 1 385 -9 5 924 2302 214 17 88 chr12 44535936 44536390 -76721140 + ORR1B1-int LTR MaLR 3 453 -1510 5 924 962 44 22 7 chr12 44536390 44536526 -76721004 + L1Md_F2 LINE L1 6442 6579 -3 6 924 2302 214 17 88 chr12 44536526 44536671 -76720859 + ORR1B1-int LTR MaLR 454 559 -1404 5 924 2270 215 81 52 chr12 44536813 44537427 -76720103 + Lx7 LINE L1 6891 7522 -174 6 924 794 294 38 0 chr12 44537459 44537670 -76719860 - RodERV21-int LTR ERV1 -4717 274 56 5 924 585 0 0 0 chr12 44537670 44537735 -76719795 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 924 513 47 0 0 chr12 44537735 44537799 -76719731 + (GGA)n Simple_repeat Simple_repeat 3 66 0 6 924 264 170 0 0 chr12 44537876 44537923 -76719607 - RMER21B LTR ERV1 -275 567 521 6 924 238 245 149 9 chr12 44538156 44538263 -76719267 - Lx8 LINE L1 -1261 6212 6091 6 924 2327 216 131 12 chr12 44538573 44538704 -76718826 - Lx9 LINE L1 0 7644 7517 6 924 393 75 0 0 chr12 44538704 44538757 -76718773 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 924 2327 216 131 12 chr12 44538757 44539228 -76718302 - Lx9 LINE L1 -128 7516 6971 6 924 1552 234 82 0 chr12 44539472 44539861 -76717669 - MTC LTR MaLR 0 421 1 6 924 432 118 0 0 chr12 44539931 44539999 -76717531 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 924 309 321 50 14 chr12 44540428 44540567 -76716963 - RMER5 LTR ERV1 -199 335 192 7 924 267 93 0 0 chr12 44542139 44542182 -76715348 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 7 924 421 349 45 73 chr12 44542202 44542449 -76715081 + B4A SINE B4 7 246 -46 7 924 234 0 0 0 chr12 44542550 44542576 -76714954 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 924 333 0 0 0 chr12 44542576 44542612 -76714918 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 924 27 49 0 0 chr12 44542740 44542781 -76714749 + AT_rich Low_complexity Low_complexity 1 41 0 7 924 194 273 14 108 chr12 44542941 44543015 -76714515 + L2a LINE L2 3279 3345 -81 7 924 479 321 8 0 chr12 44543843 44543977 -76713553 + B1_Mur1 SINE Alu 2 136 -13 7 924 387 0 0 0 chr12 44544090 44544133 -76713397 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 924 221 294 118 11 chr12 44544133 44544152 -76713378 - PB1D10 SINE Alu -13 104 5 7 924 227 235 56 42 chr12 44544152 44544223 -76713307 - ID_B1 SINE B4 -67 157 86 8 924 520 362 52 26 chr12 44544873 44545145 -76712385 + B4A SINE B4 1 279 -13 8 924 261 169 0 0 chr12 44545296 44545355 -76712175 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 924 360 0 0 0 chr12 44545369 44545409 -76712121 + (TA)n Simple_repeat Simple_repeat 2 41 0 8 924 549 231 55 65 chr12 44547363 44547562 -76709968 + Lx5 LINE L1 5931 6127 -923 8 924 965 198 105 50 chr12 44547559 44547836 -76709694 + Lx5 LINE L1 6621 6912 -138 8 924 275 253 8 46 chr12 44547910 44548028 -76709502 + Lx5 LINE L1 6910 7040 -18 8 924 288 0 0 0 chr12 44548031 44548063 -76709467 + (TAA)n Simple_repeat Simple_repeat 2 33 0 8 924 25 0 0 0 chr12 44548202 44548227 -76709303 + AT_rich Low_complexity Low_complexity 1 25 0 8 924 23 33 0 0 chr12 44548451 44548481 -76709049 + AT_rich Low_complexity Low_complexity 1 30 0 8 924 22 35 0 0 chr12 44549228 44549257 -76708273 + AT_rich Low_complexity Low_complexity 1 29 0 8 924 3259 196 72 36 chr12 44549906 44550232 -76707298 - RMER6D LTR ERVK -12 708 374 8 924 360 0 0 0 chr12 44550232 44550272 -76707258 + (TC)n Simple_repeat Simple_repeat 1 40 0 9 924 555 16 0 0 chr12 44550272 44550335 -76707195 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 924 3259 196 72 36 chr12 44550335 44550691 -76706839 - RMER6D LTR ERVK -347 373 2 8 924 1050 96 0 0 chr12 44551202 44551348 -76706182 + B1_Mus2 SINE Alu 2 147 0 9 924 776 190 0 6 chr12 44551350 44551514 -76706016 + GA-rich Low_complexity Low_complexity 3 165 0 9 924 564 29 0 0 chr12 44552465 44552535 -76704995 + (CA)n Simple_repeat Simple_repeat 2 71 0 9 924 219 114 0 0 chr12 44553059 44553094 -76704436 + (TA)n Simple_repeat Simple_repeat 1 35 0 9 924 21 57 0 0 chr12 44553502 44553537 -76703993 + AT_rich Low_complexity Low_complexity 1 35 0 9 924 584 289 87 60 chr12 44553540 44553652 -76703878 - Lx9 LINE L1 -28 7616 7523 9 924 476 32 16 0 chr12 44553652 44553714 -76703816 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 924 584 289 87 60 chr12 44553714 44554084 -76703446 - Lx9 LINE L1 -122 7522 7122 9 924 23 0 0 0 chr12 44554090 44554113 -76703417 + AT_rich Low_complexity Low_complexity 1 23 0 9 924 675 282 62 52 chr12 44554113 44554498 -76703032 + L1MA7 LINE L1 5902 6290 -1 1 924 629 156 8 0 chr12 44554555 44554677 -76702853 - L1_Mus1 LINE L1 0 6567 6445 1 924 234 120 19 74 chr12 44554678 44554732 -76702798 + L1_Mus1 LINE L1 6392 6442 -125 1 924 1705 287 76 26 chr12 44554707 44555390 -76702140 - Lx9 LINE L1 -510 7134 6418 9 924 773 95 0 0 chr12 44555816 44555921 -76701609 - B1_Mus1 SINE Alu -43 105 1 1 924 486 333 43 11 chr12 44555921 44556002 -76701528 - B4 SINE B4 -202 90 4 1 924 37 62 0 0 chr12 44556011 44556076 -76701454 + AT_rich Low_complexity Low_complexity 1 65 0 1 924 35 92 0 0 chr12 44556469 44556567 -76700963 + AT_rich Low_complexity Low_complexity 1 98 0 1 924 993 222 19 0 chr12 44558045 44558252 -76699278 + B3 SINE B2 1 211 -5 1 924 291 28 0 0 chr12 44558889 44558925 -76698605 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 924 180 0 0 0 chr12 44558944 44558964 -76698566 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1 924 485 271 29 23 chr12 44559871 44560045 -76697485 + GA-rich Low_complexity Low_complexity 4 178 0 1 924 2245 248 52 78 chr12 44560291 44560399 -76697131 + Lx7 LINE L1 6893 6995 -701 1 924 928 79 0 0 chr12 44560399 44560526 -76697004 + L1_Mus2 LINE L1 6440 6566 0 1 924 2245 248 52 78 chr12 44560526 44560838 -76696692 + Lx7 LINE L1 6996 7301 -395 1 924 1705 42 0 9 chr12 44560838 44561056 -76696474 + L1Md_F2 LINE L1 6367 6582 0 1 924 2245 248 52 78 chr12 44561056 44561459 -76696071 + Lx7 LINE L1 7302 7696 0 1 924 1220 20 7 0 chr12 44561840 44561989 -76695541 - B2_Mm2 SINE B2 -45 150 1 1 924 345 331 37 22 chr12 44562827 44562963 -76694567 + B1F SINE Alu 1 138 -11 1 924 771 248 19 14 chr12 44563702 44563915 -76693615 + Lx6 LINE L1 7247 7460 0 1 925 28 29 0 0 chr12 44565446 44565481 -76692049 + AT_rich Low_complexity Low_complexity 1 35 0 1 925 310 324 0 19 chr12 44565704 44565811 -76691719 + CT-rich Low_complexity Low_complexity 4 108 0 1 925 195 42 0 0 chr12 44565900 44565924 -76691606 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 925 328 252 38 28 chr12 44565930 44566036 -76691494 - B1_Mur4 SINE Alu -1 149 43 1 925 302 200 18 0 chr12 44566068 44566123 -76691407 - PB1D9 SINE Alu -62 58 3 1 925 189 121 0 0 chr12 44566542 44566575 -76690955 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 1 925 569 295 89 70 chr12 44567712 44568171 -76689359 - L1MA6 LINE L1 -132 6168 5701 1 925 3684 97 20 24 chr12 44568236 44568988 -76688542 - Lx LINE L1 -545 6109 5365 1 925 3427 176 37 19 chr12 44568996 44569698 -76687832 + L1_Mur2 LINE L1 4702 5416 -461 1 925 1406 319 118 32 chr12 44569688 44569966 -76687564 - Lx8 LINE L1 -593 7051 6628 1 925 450 0 0 0 chr12 44569966 44570016 -76687514 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 925 1406 329 110 39 chr12 44570016 44570563 -76686967 - Lx8 LINE L1 -875 6769 6172 1 925 646 311 47 33 chr12 44570720 44571114 -76686416 + Lx7 LINE L1 5587 5949 -1524 1 925 1792 169 32 24 chr12 44572965 44573305 -76684225 + Lx3A LINE L1 6632 6974 -7 1 925 29 0 0 0 chr12 44573306 44573335 -76684195 + AT_rich Low_complexity Low_complexity 1 29 0 1 925 1108 116 6 0 chr12 44574053 44574234 -76683296 + L1Md_F2 LINE L1 6401 6582 0 1 925 372 128 0 0 chr12 44574369 44574447 -76683083 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 925 297 149 0 0 chr12 44574446 44574513 -76683017 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 925 1155 75 0 0 chr12 44575965 44576112 -76681418 + B1_Mus2 SINE Alu 1 147 0 1 925 330 247 37 12 chr12 44576893 44576975 -76680555 + B4A SINE B4 10 93 -199 1 925 1190 40 14 0 chr12 44576977 44577125 -76680405 + B1_Mur4 SINE Alu 1 150 0 1 925 189 0 0 0 chr12 44577125 44577146 -76680384 + (A)n Simple_repeat Simple_repeat 1 21 0 1 925 2299 33 0 11 chr12 44577227 44577496 -76680034 + L1_Mm LINE L1 5320 5586 -297 1 925 8919 8 0 0 chr12 44577496 44578491 -76679039 + L1Md_T LINE L1 5588 6582 0 1 925 288 0 0 0 chr12 44578506 44578538 -76678992 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 1 925 423 0 0 0 chr12 44578601 44578648 -76678882 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 925 445 325 155 37 chr12 44578688 44579281 -76678249 + L1MC3 LINE L1 4991 5653 -2132 1 925 486 272 77 52 chr12 44579699 44579893 -76677637 + MLT1D LTR MaLR 307 505 0 1 925 3934 205 100 54 chr12 44580022 44580086 -76677444 - RLTR21 LTR ERVK -375 1197 1128 1 925 446 108 0 13 chr12 44580086 44580161 -76677369 + (CATA)n Simple_repeat Simple_repeat 1 74 0 1 925 3934 205 100 54 chr12 44580161 44581235 -76676295 - RLTR21 LTR ERVK -445 1127 6 1 925 819 310 107 9 chr12 44581326 44581908 -76675622 + L1MC3 LINE L1 6720 7358 -427 1 925 1538 326 52 31 chr12 44582054 44582740 -76674790 + Lx8 LINE L1 6519 7219 -254 1 925 1297 212 31 35 chr12 44582753 44583041 -76674489 - Lx6 LINE L1 0 7460 7174 1 925 1358 112 81 8 chr12 44583918 44584153 -76673377 + Lx2 LINE L1 6746 6997 0 1 925 1072 104 7 0 chr12 44585009 44585153 -76672377 - B1_Mus2 SINE Alu -1 146 2 1 925 814 172 75 0 chr12 44585846 44586020 -76671510 + Lx3A LINE L1 6792 6978 -3 1 925 3181 108 41 16 chr12 44586308 44586797 -76670733 - L1_Mus4 LINE L1 -271 6365 5865 1 925 3215 112 16 2 chr12 44586790 44587299 -76670231 - L1_Mur2 LINE L1 -2747 3130 2615 1 925 451 348 92 10 chr12 44587299 44587505 -76670025 - RCHARR1 DNA MER1_type -714 260 38 1 925 325 298 61 25 chr12 44588028 44588224 -76669306 + MLT1-int LTR MaLR 1 203 -1168 1 925 385 216 0 54 chr12 44588299 44588392 -76669138 + MT2A LTR ERVL 1 88 -445 1 925 5558 100 11 1 chr12 44588413 44589204 -76668326 - L1Md_F2 LINE L1 0 6582 5784 1 925 3748 67 0 0 chr12 44589204 44589680 -76667850 + L1Md_F2 LINE L1 5309 5784 -99 1 925 1230 253 161 30 chr12 44589719 44590136 -76667394 + MT2A LTR ERVL 96 533 0 1 925 238 323 31 51 chr12 44590389 44590487 -76667043 + MLT1-int LTR MaLR 609 704 -667 1 925 304 336 35 35 chr12 44590819 44591050 -76666480 + HAL1 LINE L1 2073 2303 -204 1 925 5469 35 0 0 chr12 44592244 44592892 -76664638 - L1Md_T LINE L1 0 6582 5935 1 925 348 364 110 59 chr12 44593635 44593889 -76663641 + B4 SINE B4 8 274 -18 1 925 468 207 0 0 chr12 44593922 44594033 -76663497 + (TA)n Simple_repeat Simple_repeat 1 111 0 1 925 21 36 0 0 chr12 44594240 44594268 -76663262 + AT_rich Low_complexity Low_complexity 1 28 0 1 925 22 0 0 0 chr12 44594950 44594972 -76662558 + AT_rich Low_complexity Low_complexity 1 22 0 1 925 295 346 20 0 chr12 44595078 44595179 -76662351 - MTEb LTR MaLR -5 374 272 1 925 1614 291 65 6 chr12 44595376 44595895 -76661635 + Lx7 LINE L1 6689 7238 -458 1 925 245 283 155 75 chr12 44596406 44596593 -76660937 - MIRb SINE MIR -28 240 39 1 925 972 309 90 34 chr12 44598184 44598539 -76658991 + MTE2a LTR MaLR 5 379 0 1 925 27594 62 1 21 chr12 44598981 44603256 -76654274 + L1Md_F LINE L1 518 4705 -1178 1 925 28302 68 4 0 chr12 44603251 44606967 -76650563 + L1Md_F2 LINE L1 1856 5585 -298 1 925 7724 62 7 2 chr12 44606968 44607947 -76649583 + L1Md_F2 LINE L1 5587 6570 -12 1 925 489 88 0 0 chr12 44608501 44608581 -76648949 + (T)n Simple_repeat Simple_repeat 1 80 0 1 925 244 6 0 156 chr12 44608590 44608795 -76648735 + (GTTTG)n Simple_repeat Simple_repeat 2 174 0 1 925 229 306 71 0 chr12 44608889 44608987 -76648543 - RMER15 LTR ERVL -63 512 408 1 925 715 267 25 46 chr12 44609020 44609216 -76648314 - RMER15-int LTR ERVL -542 4457 4266 1 925 700 304 65 0 chr12 44609285 44609513 -76648017 - RMER15-int LTR ERVL -4145 854 612 1 925 495 0 0 0 chr12 44609513 44609568 -76647962 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 1 925 700 304 65 0 chr12 44609568 44609602 -76647928 - RMER15-int LTR ERVL -4388 611 576 1 925 573 360 48 7 chr12 44609616 44609885 -76647645 - RMER15-int LTR ERVL -4451 548 269 1 925 2211 229 54 34 chr12 44610131 44610683 -76646847 - RLTR20B1 LTR ERVK 0 563 1 1 925 268 321 118 7 chr12 44610686 44610821 -76646709 - RMER15 LTR ERVL -151 424 275 1 925 264 341 78 35 chr12 44611021 44611416 -76646114 + L1M3 LINE L1 3984 4395 -1745 1 925 383 0 21 0 chr12 44611972 44612019 -76645511 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 925 391 38 0 0 chr12 44612260 44612400 -76645130 + L1_Mus1 LINE L1 6510 6567 0 1 925 21338 150 34 4 chr12 44612405 44613797 -76643733 + L1_Mus3 LINE L1 2009 3483 -2400 1 925 401 0 20 0 chr12 44613797 44613846 -76643684 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1 925 21338 150 34 4 chr12 44613846 44616093 -76641437 + L1_Mus3 LINE L1 3484 5747 -136 1 925 207 0 0 0 chr12 44616093 44616116 -76641414 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 925 21338 110 16 12 chr12 44616116 44616736 -76640794 + L1_Mus3 LINE L1 5748 6381 -257 1 925 207 0 0 0 chr12 44616736 44616759 -76640771 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 925 6905 110 16 12 chr12 44616759 44617022 -76640508 + L1_Mus3 LINE L1 6382 6635 -3 1 925 26 0 0 0 chr12 44617415 44617441 -76640089 + AT_rich Low_complexity Low_complexity 1 26 0 1 925 193 303 116 54 chr12 44617994 44618123 -76639407 - MIRb SINE MIR -93 175 39 1 925 21 36 0 0 chr12 44618462 44618490 -76639040 + AT_rich Low_complexity Low_complexity 1 28 0 1 925 405 0 0 0 chr12 44618490 44618535 -76638995 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 925 286 288 78 46 chr12 44618844 44618928 -76638602 - L1M1 LINE L1 -522 5778 5692 1 925 2932 49 0 29 chr12 44618928 44619304 -76638226 - RLTR10B2 LTR ERVK 0 365 1 1 925 286 288 78 46 chr12 44619304 44619372 -76638158 - L1M1 LINE L1 -609 5691 5621 1 925 968 175 125 0 chr12 44619806 44620006 -76637524 + URR1A DNA MER1_type 2 226 0 1 925 409 230 23 47 chr12 44620539 44620667 -76636863 - L1MB7 LINE L1 -18 6166 6042 1 925 5231 45 5 1 chr12 44622750 44623398 -76634132 - L1Md_F2 LINE L1 0 6582 5933 1 925 307 266 49 107 chr12 44623687 44623809 -76633721 + L2a LINE L2 3307 3421 -5 1 925 186 103 0 0 chr12 44624167 44624196 -76633334 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 925 223 277 142 0 chr12 44624852 44624941 -76632589 + MIRb SINE MIR 142 246 -22 1 925 226 255 45 81 chr12 44625840 44625854 -76631676 - PB1D9 SINE Alu -8 112 6 1 925 265 299 52 0 chr12 44625854 44625951 -76631579 - B4 SINE B4 -100 192 91 1 925 1131 75 0 0 chr12 44626372 44626518 -76631012 - B1_Mus2 SINE Alu 0 147 2 1 925 4770 160 22 21 chr12 44627083 44628621 -76628909 - Lx2 LINE L1 0 6567 4967 1 925 3456 157 123 6 chr12 44628618 44629160 -76628370 + Lx2 LINE L1 6282 6867 -130 1 925 198 0 0 0 chr12 44629160 44629182 -76628348 + (TGGG)n Simple_repeat Simple_repeat 3 24 0 1 925 3456 157 123 6 chr12 44629182 44629279 -76628251 + Lx2 LINE L1 6868 6995 -2 1 925 281 26 26 0 chr12 44629427 44629465 -76628065 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 925 26 64 0 0 chr12 44629791 44629838 -76627692 + AT_rich Low_complexity Low_complexity 1 47 0 1 925 402 291 225 0 chr12 44630541 44630723 -76626807 - Lx8 LINE L1 -175 7298 7076 2 925 425 283 122 24 chr12 44630838 44630961 -76626569 - ID_B1 SINE B4 0 224 90 2 925 285 314 46 69 chr12 44631528 44631658 -76625872 + Charlie4z DNA MER1_type 23 149 -18 2 925 633 247 139 12 chr12 44631985 44632157 -76625373 + MER58A DNA MER1_type 26 219 -5 2 925 25 51 0 0 chr12 44633841 44633880 -76623650 + AT_rich Low_complexity Low_complexity 1 39 0 2 925 3970 82 0 7 chr12 44634087 44634629 -76622901 - L1Md_F2 LINE L1 0 6582 6045 2 925 2548 57 45 0 chr12 44634629 44634964 -76622566 + L1Md_F2 LINE L1 5673 6022 -560 2 925 231 253 10 117 chr12 44634964 44635067 -76622463 + MT2B2 LTR ERVL 166 257 -327 2 925 349 214 47 12 chr12 44634983 44635068 -76622462 + PB1D9 SINE Alu 18 105 -15 2 925 209 189 0 0 chr12 44635184 44635221 -76622309 + GA-rich Low_complexity Low_complexity 3 39 0 2 925 825 136 0 0 chr12 44635228 44635382 -76622148 + (GAA)n Simple_repeat Simple_repeat 1 154 0 2 925 494 179 42 0 chr12 44635594 44635689 -76621841 - B1_Mur4 SINE Alu -1 149 51 2 925 356 346 72 69 chr12 44635700 44636060 -76621470 + L1M5 LINE L1 2673 3033 -3113 2 925 1195 123 27 0 chr12 44636064 44636251 -76621279 + B2_Mm2 SINE B2 2 193 -2 2 925 270 0 0 0 chr12 44636325 44636355 -76621175 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 925 212 0 36 0 chr12 44636780 44636808 -76620722 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 925 5375 219 40 54 chr12 44636810 44637426 -76620104 - Lx2B LINE L1 -79 6929 6383 2 925 180 0 0 0 chr12 44637426 44637446 -76620084 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 925 5375 173 26 13 chr12 44637446 44638426 -76619104 - Lx2B LINE L1 -612 6388 5398 2 925 1078 349 45 41 chr12 44638732 44639264 -76618266 + MLT2B3 LTR ERVL 13 546 -8 2 925 190 349 79 20 chr12 44639284 44639436 -76618094 - L2 LINE L2 -1600 1819 1659 2 925 221 228 13 0 chr12 44639543 44639622 -76617908 + CT-rich Low_complexity Low_complexity 1 80 0 2 925 232 290 48 0 chr12 44640298 44640360 -76617170 + MLT1E2 LTR MaLR 60 124 -500 2 925 337 314 91 0 chr12 44640420 44640541 -76616989 + MLT1E2 LTR MaLR 218 349 -278 2 925 1896 299 94 25 chr12 44641363 44643443 -76614087 - L1MA9 LINE L1 -57 6255 4025 2 925 662 212 0 0 chr12 44643454 44643572 -76613958 + B1_Mur3 SINE Alu 13 130 -19 2 925 295 216 46 46 chr12 44643630 44643761 -76613769 - L1MA9 LINE L1 -2153 3990 3860 2 925 252 0 0 0 chr12 44643946 44643974 -76613556 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 925 614 235 0 0 chr12 44643984 44644099 -76613431 - RMER6D LTR ERVK -6 714 600 2 925 414 99 17 0 chr12 44644345 44644412 -76613118 - Lx3C LINE L1 -647 5937 5870 2 925 4082 203 282 20 chr12 44644411 44645377 -76612153 - L1_Mur2 LINE L1 -2779 3098 1764 2 925 1419 75 21 0 chr12 44645377 44645565 -76611965 + B2_Mm2 SINE B2 1 192 -3 2 925 4082 203 282 20 chr12 44645565 44646008 -76611522 - L1_Mur2 LINE L1 -4114 1763 1319 2 925 1683 265 111 88 chr12 44646008 44646756 -76610774 + RMER13A LTR ERVK 1 765 -95 2 925 4726 121 47 24 chr12 44646759 44647545 -76609985 + Lx3_Mus LINE L1 6193 6996 -13 2 925 344 269 71 18 chr12 44647563 44647733 -76609797 + L1MCb LINE L1 994 1172 -4873 2 925 594 257 0 60 chr12 44647948 44648097 -76609433 - B2_Mm2 SINE B2 -55 140 1 2 925 274 125 0 59 chr12 44648379 44648430 -76609100 - B3A SINE B2 -150 48 1 2 925 660 328 89 60 chr12 44648544 44649331 -76608199 + L1M3c LINE L1 816 1625 -4516 2 925 212 227 30 0 chr12 44649517 44649583 -76607947 + GA-rich Low_complexity Low_complexity 3 70 0 2 925 391 302 0 48 chr12 44649608 44649754 -76607776 + GA-rich Low_complexity Low_complexity 6 144 0 2 925 1067 72 0 7 chr12 44650148 44650288 -76607242 + B1_Mus1 SINE Alu 2 140 -8 2 925 204 40 0 0 chr12 44650290 44650315 -76607215 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 2 925 564 89 0 0 chr12 44650315 44650394 -76607136 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 2 925 26 0 0 0 chr12 44650517 44650543 -76606987 + AT_rich Low_complexity Low_complexity 1 26 0 2 925 1212 257 108 81 chr12 44650689 44650798 -76606732 - RLTR11A2 LTR ERVK 0 527 421 2 925 8294 26 5 0 chr12 44650798 44651767 -76605763 + L1Md_T LINE L1 5609 6582 0 2 925 1212 257 108 81 chr12 44651767 44652165 -76605365 - RLTR11A2 LTR ERVK -107 420 6 2 925 7540 156 33 2 chr12 44652620 44654813 -76602717 - Lx LINE L1 -2 6652 4396 2 925 342 362 31 0 chr12 44654813 44654976 -76602554 - MER67D LTR ERV1 -221 293 126 2 925 1297 309 80 47 chr12 44655878 44656155 -76601375 - Lx5 LINE L1 -42 7008 6752 2 925 1457 161 14 32 chr12 44656155 44656437 -76601093 + Lx4A LINE L1 6782 7058 0 2 925 1297 271 72 19 chr12 44656437 44656787 -76600743 - Lx5 LINE L1 -574 6886 6455 2 925 415 317 55 21 chr12 44656795 44656940 -76600590 + MLT1C LTR MaLR 318 467 0 2 925 335 256 2 37 chr12 44657062 44657176 -76600354 - Lx8 LINE L1 -1243 6230 6119 2 925 21 0 0 0 chr12 44657181 44657202 -76600328 + AT_rich Low_complexity Low_complexity 1 21 0 2 925 216 102 32 63 chr12 44657353 44657416 -76600114 + (CATA)n Simple_repeat Simple_repeat 4 64 0 2 925 351 0 0 0 chr12 44657521 44657560 -76599970 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 925 211 286 0 13 chr12 44657561 44657639 -76599891 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 2 925 23 54 0 0 chr12 44658882 44658919 -76598611 + AT_rich Low_complexity Low_complexity 1 37 0 2 925 500 120 0 10 chr12 44658963 44659064 -76598466 + (TCTA)n Simple_repeat Simple_repeat 4 103 0 2 925 576 0 0 0 chr12 44659071 44659135 -76598395 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 2 925 2402 181 35 45 chr12 44659237 44659752 -76597778 - RLTR28 LTR ERVL -14 510 1 2 925 360 97 0 0 chr12 44660214 44660276 -76597254 + (A)n Simple_repeat Simple_repeat 1 62 0 2 925 3550 186 35 36 chr12 44660469 44661187 -76596343 - RMER6D LTR ERVK -3 717 1 2 925 383 317 72 15 chr12 44661704 44662008 -76595522 + L1M5 LINE L1 5467 5779 -385 2 925 1893 43 4 0 chr12 44662096 44662354 -76595176 + L1Md_F3 LINE L1 6333 6584 0 2 925 988 160 94 0 chr12 44663005 44663186 -76594344 - URR1B DNA MER1_type 0 225 28 2 925 530 282 183 0 chr12 44663263 44663536 -76593994 + Lx9 LINE L1 7311 7633 -11 2 925 1920 46 17 0 chr12 44663536 44663776 -76593754 + L1Md_T LINE L1 6195 6438 -144 2 925 892 39 16 0 chr12 44663802 44663930 -76593600 - L1Md_T LINE L1 0 6582 6453 2 925 1010 35 39 65 chr12 44663927 44664081 -76593449 + L1Md_T LINE L1 6435 6584 0 2 925 24 0 0 0 chr12 44664127 44664151 -76593379 + AT_rich Low_complexity Low_complexity 1 24 0 2 925 21 36 0 0 chr12 44665043 44665071 -76592459 + AT_rich Low_complexity Low_complexity 1 28 0 2 925 298 290 190 19 chr12 44665573 44665731 -76591799 - MLT1H1 LTR MaLR -7 548 364 2 925 278 312 44 35 chr12 44665908 44666021 -76591509 - MLT1H1 LTR MaLR -436 119 6 2 925 399 357 109 31 chr12 44666039 44666317 -76591213 - MLT1H1-int LTR MaLR -11 1398 1102 2 925 351 0 0 0 chr12 44666317 44666356 -76591174 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 925 399 357 109 31 chr12 44666356 44666398 -76591132 - MLT1H1-int LTR MaLR -308 1101 1053 2 925 659 194 29 29 chr12 44666764 44666902 -76590628 - RMER1C Other Other -2 1340 1203 2 925 797 123 6 31 chr12 44666929 44666969 -76590561 + polypurine Low_complexity Low_complexity 4 41 0 2 925 243 0 0 0 chr12 44666969 44666996 -76590534 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 925 797 123 6 31 chr12 44666996 44667114 -76590416 + polypurine Low_complexity Low_complexity 42 158 0 2 925 234 319 142 68 chr12 44667465 44667613 -76589917 - RMER2 LTR ERV1 -80 487 329 2 925 728 158 19 44 chr12 44667824 44668029 -76589501 - Lx3C LINE L1 -761 6215 6016 2 925 1672 197 75 5 chr12 44668033 44668420 -76589110 + Lx3C LINE L1 6552 6965 -11 2 925 2803 36 11 137 chr12 44668632 44669078 -76588452 - RLTR10 LTR ERVK 0 390 1 2 925 8706 18 0 3 chr12 44669080 44670076 -76587454 - RLTR10-int LTR ERVK -3 1984 992 2 925 8356 36 1 2 chr12 44670353 44671340 -76586190 - RLTR10-int LTR ERVK -989 998 13 2 925 2626 36 11 137 chr12 44671389 44671833 -76585697 - RLTR10 LTR ERVK -2 388 1 2 925 324 280 9 138 chr12 44672299 44672415 -76585115 - B3A SINE B2 -6 192 92 2 925 322 330 83 5 chr12 44672423 44672615 -76584915 - L1M5 LINE L1 -470 5703 5497 2 925 320 288 130 60 chr12 44675265 44675649 -76581881 + L1MC5 LINE L1 7452 7862 -99 2 925 930 98 0 0 chr12 44676387 44676520 -76581010 + B1_Mm SINE Alu 13 145 -2 2 925 437 306 16 32 chr12 44676739 44676864 -76580666 - B4A SINE B4 -152 140 18 2 925 1139 308 94 11 chr12 44677622 44678216 -76579314 - MLT1C-int LTR MaLR -611 760 1 2 925 308 271 41 10 chr12 44678226 44678323 -76579207 - MLT1C LTR MaLR -10 457 358 2 925 329 335 52 108 chr12 44678463 44678586 -76578944 + MER2 DNA MER2_type 86 203 -142 2 925 247 85 21 21 chr12 44678586 44678634 -76578896 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 925 329 335 52 108 chr12 44678634 44678778 -76578752 + MER2 DNA MER2_type 204 338 -7 2 925 268 273 68 102 chr12 44678898 44679045 -76578485 - MLT1C LTR MaLR -320 147 6 2 925 4201 89 2 0 chr12 44679143 44679713 -76577817 - L1_Mus1 LINE L1 0 6567 5997 2 925 5106 84 12 25 chr12 44679713 44680466 -76577064 - L1_Mm LINE L1 -972 4911 4169 2 925 871 243 71 101 chr12 44681487 44681626 -76575904 + L1MB5 LINE L1 5173 5305 -841 2 925 2437 135 49 16 chr12 44681626 44681944 -76575586 + Lx2 LINE L1 6555 6866 -131 2 925 183 80 0 0 chr12 44681944 44681969 -76575561 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 925 2437 135 49 16 chr12 44681969 44682079 -76575451 + Lx2 LINE L1 6867 6996 -1 2 925 871 279 50 80 chr12 44682079 44682557 -76574973 + L1MB5 LINE L1 5306 5775 -399 2 925 236 299 152 14 chr12 44682578 44682788 -76574742 + L1MB5 LINE L1 5855 6093 -81 2 925 29 78 0 0 chr12 44682803 44682867 -76574663 + AT_rich Low_complexity Low_complexity 1 64 0 2 925 522 0 0 0 chr12 44683425 44683483 -76574047 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 925 26 0 0 0 chr12 44683658 44683684 -76573846 + AT_rich Low_complexity Low_complexity 1 26 0 2 925 24 0 0 0 chr12 44685586 44685610 -76571920 + AT_rich Low_complexity Low_complexity 1 24 0 2 925 525 32 0 0 chr12 44686143 44686206 -76571324 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 925 1072 343 65 25 chr12 44686214 44686662 -76570868 + Lx8 LINE L1 6436 6912 -561 2 925 312 27 0 0 chr12 44686662 44686699 -76570831 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 925 1072 343 65 25 chr12 44686699 44686882 -76570648 + Lx8 LINE L1 6913 7092 -381 2 925 24 0 0 0 chr12 44687879 44687903 -76569627 + AT_rich Low_complexity Low_complexity 1 24 0 2 925 314 373 17 8 chr12 44687971 44688090 -76569440 + B4A SINE B4 108 227 -65 2 925 29 0 0 0 chr12 44688569 44688598 -76568932 + AT_rich Low_complexity Low_complexity 1 29 0 2 925 333 0 0 0 chr12 44689161 44689198 -76568332 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 925 207 100 0 0 chr12 44689198 44689227 -76568303 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 925 22 0 0 0 chr12 44689354 44689376 -76568154 + AT_rich Low_complexity Low_complexity 1 22 0 3 925 7435 103 10 5 chr12 44689495 44691072 -76566458 - L1_Mus3 LINE L1 -4 6634 5050 3 925 687 319 82 8 chr12 44691113 44691369 -76566161 + B4A SINE B4 14 288 -4 3 925 5914 8 0 0 chr12 44691647 44692306 -76565224 + L1Md_T LINE L1 5924 6582 0 3 925 1546 40 15 5 chr12 44692527 44692728 -76564802 + L1Md_F3 LINE L1 6381 6583 -1 3 925 378 0 0 0 chr12 44692760 44692802 -76564728 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 925 1421 258 50 66 chr12 44693335 44693773 -76563757 - MTD LTR MaLR -30 389 1 3 925 22 56 0 0 chr12 44693775 44693811 -76563719 + AT_rich Low_complexity Low_complexity 1 36 0 3 925 213 329 0 0 chr12 44694306 44694315 -76563215 + (TA)n Simple_repeat Simple_repeat 1 9 0 3 925 312 27 0 0 chr12 44694315 44694352 -76563178 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 925 213 329 0 0 chr12 44694352 44694482 -76563048 + (TA)n Simple_repeat Simple_repeat 1 130 0 3 925 294 29 0 0 chr12 44695001 44695036 -76562494 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 926 21 0 0 0 chr12 44695859 44695880 -76561650 + AT_rich Low_complexity Low_complexity 1 21 0 3 926 234 0 0 0 chr12 44697190 44697216 -76560314 + (A)n Simple_repeat Simple_repeat 1 26 0 3 926 2257 243 10 78 chr12 44697677 44697761 -76559769 - Lx9 LINE L1 -1 7643 7567 3 926 3366 25 5 2 chr12 44697761 44698156 -76559374 - MTA_Mm LTR MaLR 0 396 1 3 926 2257 243 10 78 chr12 44698156 44698776 -76558754 - Lx9 LINE L1 -78 7566 6987 3 926 817 287 61 18 chr12 44700235 44700515 -76557015 + B4A SINE B4 1 292 0 3 926 195 42 0 0 chr12 44700520 44700544 -76556986 + (CG)n Simple_repeat Simple_repeat 2 25 0 3 926 327 25 0 0 chr12 44700544 44700583 -76556947 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 926 5461 35 0 0 chr12 44700616 44701265 -76556265 + L1Md_A LINE L1 5933 6581 -1 3 926 2662 65 21 0 chr12 44701338 44701677 -76555853 - ORR1A1 LTR MaLR 0 346 1 3 926 21 0 0 0 chr12 44702720 44702741 -76554789 + AT_rich Low_complexity Low_complexity 1 21 0 3 926 515 304 119 4 chr12 44704216 44704413 -76553117 - B3A SINE B2 0 216 3 3 926 449 284 137 34 chr12 44704614 44704971 -76552559 + L1M4c LINE L1 581 974 -5568 3 926 588 333 57 56 chr12 44705068 44705421 -76552109 + L1M4c LINE L1 1129 1479 -5063 3 926 3171 51 18 3 chr12 44705421 44705811 -76551719 - MTA_Mm LTR MaLR 0 396 1 3 926 588 302 113 84 chr12 44705811 44706074 -76551456 + L1M4c LINE L1 1476 1562 -5084 3 926 4285 114 91 57 chr12 44706228 44706998 -76550532 + Lx2A LINE L1 6213 7008 0 3 926 22 0 0 0 chr12 44708815 44708837 -76548693 + AT_rich Low_complexity Low_complexity 1 22 0 3 926 2402 91 52 6 chr12 44708972 44709315 -76548215 - RLTR10D LTR ERVK 0 359 1 3 926 601 88 10 10 chr12 44709580 44709683 -76547847 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 3 926 1357 271 16 3 chr12 44709888 44710191 -76547339 + Lx6 LINE L1 6977 7283 -177 3 926 289 233 81 14 chr12 44710488 44710562 -76546968 + MLT1A LTR MaLR 20 98 -276 3 926 371 192 51 0 chr12 44710862 44710940 -76546590 + MTEa LTR MaLR 298 379 0 3 926 710 293 81 19 chr12 44712305 44712666 -76544864 - L1_Rod LINE L1 -78 5805 5419 3 926 303 28 0 0 chr12 44714617 44714653 -76542877 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 926 219 69 0 0 chr12 44714653 44714682 -76542848 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 926 7305 9 0 0 chr12 44715752 44716569 -76540961 + L1Md_T LINE L1 5766 6582 0 3 926 198 103 0 0 chr12 44716584 44716613 -76540917 + (A)n Simple_repeat Simple_repeat 1 29 0 3 926 256 274 12 12 chr12 44716638 44716723 -76540807 - L1M5 LINE L1 -491 5688 5604 3 926 432 0 0 0 chr12 44717137 44717185 -76540345 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 926 472 297 0 33 chr12 44717195 44717317 -76540213 - RSINE1 SINE B4 -32 133 16 3 926 1164 215 42 62 chr12 44718060 44718367 -76539163 - RLTR40 LTR ERVK -5 812 512 3 926 447 70 14 0 chr12 44718367 44718438 -76539092 + L1Md_F3 LINE L1 6499 6570 -14 3 926 362 308 98 28 chr12 44718470 44718925 -76538605 - L1M2 LINE L1 -3386 2757 2267 3 926 317 281 101 58 chr12 44718974 44719163 -76538367 - L1MDa LINE L1 -5169 1464 1268 3 926 387 321 50 40 chr12 44720137 44720338 -76537192 - RLTR42-int LTR ERVK -4122 1400 1198 3 926 3097 282 69 97 chr12 44720924 44721095 -76536435 - Lx5 LINE L1 -13 7045 6890 3 926 6869 41 1 2 chr12 44721095 44721926 -76535604 - L1Md_F2 LINE L1 -11 6571 5742 3 926 3189 238 53 29 chr12 44721924 44723435 -76534095 - Lx5 LINE L1 -167 6891 5401 3 926 3614 208 52 65 chr12 44723435 44723859 -76533671 + L1_Mur2 LINE L1 4071 4502 -1375 3 926 266 128 0 0 chr12 44723859 44723898 -76533632 - MT2B LTR ERVL -562 39 1 3 926 3614 208 52 65 chr12 44723898 44724602 -76532928 + L1_Mur2 LINE L1 4503 5222 -655 3 926 486 0 0 0 chr12 44724602 44724656 -76532874 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 926 1114 83 0 19 chr12 44724698 44724858 -76532672 + LTRIS2 LTR ERV1 323 479 -85 3 926 552 147 10 0 chr12 44724860 44724962 -76532568 + L1_Mur2 LINE L1 5283 5385 -492 3 926 259 269 110 15 chr12 44724970 44725106 -76532424 - MER45B DNA Tip100 -251 789 641 3 926 246 319 168 25 chr12 44725426 44725622 -76531908 - MER45B DNA Tip100 -619 421 198 3 926 183 42 0 0 chr12 44726218 44726242 -76531288 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 926 549 377 37 5 chr12 44726391 44726607 -76530923 + B4A SINE B4 2 224 -68 3 926 33 25 0 0 chr12 44726607 44726647 -76530883 + AT_rich Low_complexity Low_complexity 1 40 0 3 926 410 324 6 44 chr12 44727087 44727268 -76530262 + Lx8 LINE L1 6971 7144 -329 3 926 287 320 19 19 chr12 44727352 44727457 -76530073 + RMER15 LTR ERVL 372 476 -99 3 926 3614 114 42 0 chr12 44727523 44728066 -76529464 + L1_Mus4 LINE L1 6067 6632 -4 3 926 28 29 0 0 chr12 44728066 44728101 -76529429 + AT_rich Low_complexity Low_complexity 1 35 0 3 926 210 105 0 0 chr12 44729483 44729521 -76528009 + (A)n Simple_repeat Simple_repeat 1 38 0 3 926 225 0 0 0 chr12 44729848 44729873 -76527657 + (A)n Simple_repeat Simple_repeat 1 25 0 3 926 3962 92 3 37 chr12 44729979 44730579 -76526951 + L1Md_F2 LINE L1 5998 6577 -5 3 926 23 33 0 0 chr12 44731081 44731111 -76526419 + AT_rich Low_complexity Low_complexity 1 30 0 3 926 316 341 54 25 chr12 44732139 44732194 -76525336 - ID_B1 SINE B4 0 224 110 3 926 337 298 0 0 chr12 44732194 44732278 -76525252 - PB1D10 SINE Alu -33 84 1 3 926 316 341 54 25 chr12 44732278 44732296 -76525234 - ID_B1 SINE B4 0 109 68 3 926 296 400 0 0 chr12 44733030 44733135 -76524395 - PB1D10 SINE Alu -7 110 6 3 926 312 120 0 0 chr12 44733812 44733862 -76523668 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 926 282 0 0 0 chr12 44734543 44734583 -76522947 - L1_Mus2 LINE L1 -2 6564 6525 3 926 427 271 50 28 chr12 44734589 44734771 -76522759 + L1M5 LINE L1 5614 5799 -374 3 926 298 368 65 59 chr12 44735012 44735318 -76522212 + ORR1D1 LTR MaLR 54 361 -13 3 926 236 30 30 0 chr12 44735851 44735884 -76521646 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 926 910 69 0 44 chr12 44735975 44736111 -76521419 - L1_Mus2 LINE L1 0 6566 6437 3 926 209 91 0 43 chr12 44736392 44736438 -76521092 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 926 333 0 0 0 chr12 44737799 44737836 -76519694 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 926 309 270 40 0 chr12 44741266 44741366 -76516164 - L1MEf LINE L1 -425 5739 5636 3 926 24 77 0 0 chr12 44741401 44741453 -76516077 + AT_rich Low_complexity Low_complexity 1 52 0 3 926 234 130 0 0 chr12 44741726 44741764 -76515766 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 3 926 807 31 0 0 chr12 44741764 44741862 -76515668 + (GTGTG)n Simple_repeat Simple_repeat 5 102 0 3 926 234 130 0 0 chr12 44741862 44741869 -76515661 + (TTGG)n Simple_repeat Simple_repeat 3 9 0 3 926 227 341 76 23 chr12 44741875 44742007 -76515523 - B1F SINE Alu -9 140 2 3 926 241 349 12 23 chr12 44742386 44742559 -76514971 - L1MEf LINE L1 -1281 4865 4695 3 926 255 273 66 60 chr12 44742712 44742895 -76514635 - L1MEf LINE L1 -4596 1646 1463 3 926 429 386 45 0 chr12 44743222 44743424 -76514106 + MER20 DNA MER1_type 2 212 -7 3 926 23 54 0 0 chr12 44743540 44743577 -76513953 + AT_rich Low_complexity Low_complexity 1 37 0 3 926 231 36 0 0 chr12 44743828 44743856 -76513674 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 3 926 22 35 0 0 chr12 44744353 44744382 -76513148 + AT_rich Low_complexity Low_complexity 1 29 0 3 926 351 278 134 32 chr12 44744583 44744769 -76512761 - L1ME1 LINE L1 -196 5983 5779 3 926 1397 165 90 8 chr12 44744941 44745209 -76512321 - ORR1C2 LTR MaLR 0 384 95 3 926 267 31 0 0 chr12 44745222 44745254 -76512276 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 926 706 238 31 16 chr12 44745268 44745460 -76512070 - Lx4B LINE L1 -49 7009 6815 3 926 1226 199 79 12 chr12 44745459 44745789 -76511741 + Lx4B LINE L1 5929 6280 -778 3 926 553 164 109 0 chr12 44745790 44745900 -76511630 - ORR1C2 LTR MaLR -262 122 1 3 926 32 0 0 0 chr12 44746170 44746202 -76511328 + AT_rich Low_complexity Low_complexity 1 32 0 3 926 329 265 134 27 chr12 44746202 44746388 -76511142 - L1MDa LINE L1 -2856 3681 3476 3 926 261 0 0 0 chr12 44746596 44746625 -76510905 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 926 522 348 126 26 chr12 44746637 44747106 -76510424 - L1MDa LINE L1 -3369 3168 2653 3 926 296 271 42 21 chr12 44747132 44747275 -76510255 - L1MDa LINE L1 -4010 2623 2478 3 926 387 60 0 0 chr12 44747602 44747652 -76509878 + (CATA)n Simple_repeat Simple_repeat 2 51 0 3 926 865 236 77 71 chr12 44747654 44747951 -76509579 - RMER10A LTR ERVL -25 417 119 3 926 2321 151 31 2 chr12 44747951 44748375 -76509155 - L1_Mm LINE L1 -336 5547 5112 3 926 1276 203 10 10 chr12 44748376 44748665 -76508865 + L1_Mur3 LINE L1 5244 5532 -348 3 926 532 309 59 50 chr12 44748711 44748932 -76508598 - Lx8 LINE L1 -143 7330 7108 3 926 3487 195 26 15 chr12 44749057 44749792 -76507738 - RLTR22_Mur LTR ERVK -1101 747 5 3 926 306 236 81 9 chr12 44749801 44749912 -76507618 + Lx5 LINE L1 6930 7048 -2 3 926 228 234 31 21 chr12 44749946 44750042 -76507488 + L1MDb LINE L1 1221 1317 -5092 3 926 739 169 8 0 chr12 44750158 44750288 -76507242 + Lx2 LINE L1 6489 6619 -378 4 926 9636 88 20 68 chr12 44750285 44752125 -76505405 + Lx3_Mus LINE L1 4299 6034 -975 4 926 231 36 0 0 chr12 44752125 44752153 -76505377 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 4 926 8341 119 29 19 chr12 44752153 44753087 -76504443 + Lx3_Mus LINE L1 6035 7005 -4 4 926 38 22 0 0 chr12 44753087 44753132 -76504398 + AT_rich Low_complexity Low_complexity 1 45 0 4 926 1291 223 31 56 chr12 44753132 44753384 -76504146 + RLTR22_Mur LTR ERVK 1500 1751 -97 4 926 324 0 0 0 chr12 44753384 44753420 -76504110 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 926 1291 223 31 56 chr12 44753420 44753524 -76504006 + RLTR22_Mur LTR ERVK 1752 1847 -1 4 926 3188 182 35 17 chr12 44753526 44754159 -76503371 - Lx5 LINE L1 -261 6789 6146 4 926 319 198 85 59 chr12 44754169 44754287 -76503243 - L1MDa LINE L1 -5275 1358 1238 3 926 691 282 0 22 chr12 44754586 44754764 -76502766 - ORR1E LTR MaLR -185 174 1 4 926 22 56 0 0 chr12 44755206 44755242 -76502288 + AT_rich Low_complexity Low_complexity 1 36 0 4 926 1496 49 16 0 chr12 44757126 44757310 -76500220 - B2_Mm2 SINE B2 -7 188 2 4 926 1032 312 22 63 chr12 44757915 44758404 -76499126 - Lx8 LINE L1 -788 6685 6217 4 926 34872 32 4 8 chr12 44758416 44763601 -76493929 + L1Md_A LINE L1 433 5586 -297 4 926 8313 40 0 0 chr12 44763601 44764597 -76492933 + L1Md_A LINE L1 5587 6582 0 4 926 181 235 28 56 chr12 44764821 44764893 -76492637 + L3 LINE CR1 1262 1331 -3158 4 926 319 243 158 22 chr12 44765321 44765490 -76492040 - Lx8 LINE L1 -1260 6213 6031 4 926 711 323 87 18 chr12 44765689 44766127 -76491403 + Lx8 LINE L1 7002 7469 -4 4 926 312 192 160 44 chr12 44766281 44766389 -76491141 - PB1D10 SINE Alu 0 127 2 4 926 660 244 17 63 chr12 44767817 44767992 -76489538 - B3 SINE B2 -3 213 47 4 926 1035 68 37 0 chr12 44769219 44769382 -76488148 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 4 926 276 229 0 54 chr12 44770035 44770109 -76487421 + A-rich Low_complexity Low_complexity 5 74 0 4 926 2026 127 35 9 chr12 44770595 44770914 -76486616 - ORR1A2 LTR MaLR 0 327 1 4 926 265 161 226 0 chr12 44771025 44771087 -76486443 + RLTR6_Mm LTR ERV1 1 76 -578 4 926 1913 139 244 30 chr12 44771132 44771599 -76485931 + RLTR6_Mm LTR ERV1 37 603 -51 4 926 56467 34 19 0 chr12 44771600 44779235 -76478295 + RLTR6-int LTR ERV1 1 7778 0 4 926 265 161 226 0 chr12 44779235 44779297 -76478233 + RLTR6_Mm LTR ERV1 1 76 -578 4 926 1874 131 254 31 chr12 44779342 44779790 -76477740 + RLTR6_Mm LTR ERV1 37 584 -70 4 926 329 71 0 0 chr12 44780094 44780150 -76477380 + L1_Mus3 LINE L1 6580 6635 -3 4 926 6911 99 25 9 chr12 44780189 44781336 -76476194 + L1_Mus3 LINE L1 5446 6631 -7 4 926 512 310 112 13 chr12 44781514 44781746 -76475784 + MER63D DNA AcHobo 359 613 -448 4 926 256 261 0 0 chr12 44782204 44782269 -76475261 + MER63D DNA AcHobo 845 909 -152 4 926 315 168 45 27 chr12 44782552 44782662 -76474868 - Lx9 LINE L1 -3 7641 7530 4 926 364 233 66 16 chr12 44782674 44782796 -76474734 - Lx7 LINE L1 -8 7688 7561 4 926 3948 93 9 42 chr12 44782798 44783447 -76474083 - MusHAL1 LINE L1 -894 1818 1191 4 926 589 194 113 0 chr12 44783468 44783592 -76473938 - Lx7 LINE L1 -1156 6540 6403 4 926 244 256 89 16 chr12 44783728 44783851 -76473679 + MER63D DNA AcHobo 907 1038 -23 4 926 471 169 0 0 chr12 44784106 44784189 -76473341 - L1_Mus2 LINE L1 -457 6109 6027 4 926 3235 80 7 11 chr12 44784189 44784645 -76472885 + L1_Mus2 LINE L1 6112 6565 -1 4 926 987 325 56 10 chr12 44784663 44784971 -76472559 + Lx8 LINE L1 6277 6601 -872 4 926 2191 23 114 0 chr12 44784971 44785233 -76472297 + RLTR10B LTR ERVK 1 292 0 4 926 987 325 56 10 chr12 44785233 44785319 -76472211 + Lx8 LINE L1 6602 6688 -785 4 926 1957 214 14 36 chr12 44785322 44785739 -76471791 + MTC LTR MaLR 6 413 -8 4 926 349 295 0 0 chr12 44785743 44785855 -76471675 + Lx8 LINE L1 6685 6796 -677 4 926 828 320 65 22 chr12 44785966 44786458 -76471072 + Lx8 LINE L1 6956 7468 -5 4 926 511 259 21 78 chr12 44786528 44786541 -76470989 - B1F SINE Alu 0 149 140 4 926 414 0 0 0 chr12 44786541 44786587 -76470943 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 926 511 259 21 78 chr12 44786587 44786715 -76470815 - B1F SINE Alu -10 139 16 4 926 4886 83 40 1 chr12 44786731 44787487 -76470043 + MusHAL1 LINE L1 932 1716 -996 4 926 3067 92 51 6 chr12 44787487 44787792 -76469738 - RLTR44C LTR ERVK -13 489 175 4 926 504 0 0 0 chr12 44787792 44787848 -76469682 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 926 3067 92 51 6 chr12 44787848 44788010 -76469520 - RLTR44C LTR ERVK -328 174 2 4 926 5813 86 30 17 chr12 44788010 44788463 -76469067 + MusHAL1 LINE L1 1713 2169 -543 4 926 1318 82 9 24 chr12 44788463 44788675 -76468855 - L1Md_F2 LINE L1 -5 6577 6369 4 926 1596 111 6 108 chr12 44788676 44789009 -76468521 - L1_Mus3 LINE L1 -5 6633 6335 4 926 5813 86 30 17 chr12 44789009 44789484 -76468046 + MusHAL1 LINE L1 2170 2655 -57 4 926 500 264 9 0 chr12 44789950 44790060 -76467470 + B1_Mur1 SINE Alu 18 128 -21 4 926 226 355 0 53 chr12 44790060 44790081 -76467449 + ID_B1 SINE B4 99 222 -2 4 926 909 28 0 0 chr12 44790121 44790229 -76467301 + (GGGAA)n Simple_repeat Simple_repeat 5 112 0 4 926 795 159 0 17 chr12 44790251 44790424 -76467106 + GA-rich Low_complexity Low_complexity 3 172 0 4 926 931 305 82 31 chr12 44792146 44792501 -76465029 + MTEa LTR MaLR 1 373 -6 4 926 318 357 55 67 chr12 44792623 44792788 -76464742 + RSINE1 SINE B4 3 165 0 4 926 285 241 0 0 chr12 44792997 44793055 -76464475 + PB1D7 SINE Alu 25 82 -38 4 926 336 324 28 49 chr12 44793805 44793893 -76463637 + MLT1D LTR MaLR 311 399 -106 4 926 2395 214 45 32 chr12 44793893 44794487 -76463043 + RLTR1D LTR ERV1 4 605 0 4 926 336 324 28 49 chr12 44794487 44794541 -76462989 + MLT1D LTR MaLR 400 450 -55 4 926 366 329 30 30 chr12 44795248 44795546 -76461984 - L1M5 LINE L1 -2444 3702 3405 4 926 376 289 216 17 chr12 44795785 44796193 -76461337 - L1M5 LINE L1 -2988 3158 2667 4 926 1233 225 68 78 chr12 44796695 44796987 -76460543 + RMER10A LTR ERVL 1 283 -159 4 926 5215 121 27 59 chr12 44796987 44797919 -76459611 + RLTR13D6 LTR ERVK 1 902 0 4 926 1233 225 68 78 chr12 44797919 44798035 -76459495 + RMER10A LTR ERVL 284 405 -37 4 926 334 235 48 14 chr12 44798090 44798233 -76459297 + L1_Mur3 LINE L1 3973 4130 -1756 4 926 623 255 353 15 chr12 44798443 44798782 -76458748 + Lx8 LINE L1 6109 6562 -911 4 926 338 206 157 9 chr12 44799083 44799191 -76458339 + Lx8 LINE L1 6666 6789 -684 4 926 5174 46 27 9 chr12 44800055 44800712 -76456818 - L1Md_F2 LINE L1 0 6582 5914 4 926 4458 46 5 0 chr12 44800712 44801277 -76456253 + L1Md_F2 LINE L1 5316 5883 0 4 926 333 47 0 0 chr12 44801413 44801456 -76456074 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 926 306 229 82 30 chr12 44802029 44802164 -76455366 + RLTR42-int LTR ERVK 1869 2010 -3512 4 926 377 39 0 19 chr12 44802170 44802222 -76455308 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 4 926 1789 139 39 0 chr12 44802226 44802507 -76455023 - Lx3B LINE L1 -4 6969 6678 4 926 354 117 51 13 chr12 44802515 44802593 -76454937 + RLTR42-int LTR ERVK 2012 2092 -3430 4 926 707 229 77 135 chr12 44802595 44802771 -76454759 + MYSERV6-int LTR ERVK 7159 7319 -1640 4 926 366 80 0 0 chr12 44802771 44802821 -76454709 + (TAA)n Simple_repeat Simple_repeat 1 50 0 4 926 707 219 68 149 chr12 44802821 44803284 -76454246 + MYSERV6-int LTR ERVK 7320 7500 -1459 4 926 258 56 0 0 chr12 44803799 44803835 -76453695 + (A)n Simple_repeat Simple_repeat 1 36 0 4 926 1334 233 37 73 chr12 44804189 44804643 -76452887 + RMER10A LTR ERVL 1 438 -4 4 926 297 282 73 107 chr12 44805330 44805564 -76451966 + MLT1C LTR MaLR 43 268 -199 4 926 302 348 46 46 chr12 44805782 44806041 -76451489 + RLTR14 LTR ERV1 111 369 -13 4 926 252 278 137 38 chr12 44806252 44806383 -76451147 + LTR80B LTR ERVL 5 148 -436 4 926 442 304 33 6 chr12 44807388 44807570 -76449960 + L1VL4 LINE L1 214 400 -5902 4 926 580 103 26 8 chr12 44807564 44807681 -76449849 + MusHAL1 LINE L1 1948 2066 -646 4 926 772 182 0 0 chr12 44807667 44807837 -76449693 + L1_Mur1 LINE L1 3575 3744 -2142 4 926 3467 174 27 15 chr12 44807830 44808608 -76448922 + L1_Mur2 LINE L1 3274 4060 -1817 4 926 3894 191 16 55 chr12 44808606 44809394 -76448136 + L1_Mm LINE L1 4549 5293 -590 4 926 1091 103 0 0 chr12 44809394 44809539 -76447991 + B1_Mus1 SINE Alu 3 147 -1 4 926 3894 191 16 55 chr12 44809539 44809740 -76447790 + L1_Mm LINE L1 5294 5500 -383 4 926 1284 166 19 8 chr12 44809897 44810175 -76447355 - RMER6C LTR ERVK 0 690 380 4 926 3029 101 17 17 chr12 44810298 44810449 -76447081 - L1_Mus3 LINE L1 -6 6632 6484 4 926 2955 62 23 5 chr12 44810449 44810841 -76446689 - MTB LTR MaLR -1 399 1 4 926 3029 101 17 17 chr12 44810841 44811161 -76446369 - L1_Mus3 LINE L1 -155 6483 6161 4 926 1459 208 82 114 chr12 44811161 44811475 -76446055 - RMER6C LTR ERVK -206 484 163 4 926 8128 33 5 1 chr12 44811475 44812457 -76445073 + L1Md_F3 LINE L1 5598 6583 -1 4 926 1459 208 82 114 chr12 44812457 44812642 -76444888 - RMER6C LTR ERVK -528 162 1 4 926 22 0 0 0 chr12 44812965 44812987 -76444543 + AT_rich Low_complexity Low_complexity 1 22 0 4 926 23 0 0 0 chr12 44813366 44813389 -76444141 + AT_rich Low_complexity Low_complexity 1 23 0 4 926 288 403 0 0 chr12 44813409 44813486 -76444044 - ID4 SINE ID -6 77 1 4 926 25 0 0 0 chr12 44814061 44814086 -76443444 + AT_rich Low_complexity Low_complexity 1 25 0 4 926 420 244 23 0 chr12 44814141 44814227 -76443303 + ORR1B1 LTR MaLR 131 218 -176 4 926 241 233 11 43 chr12 44814300 44814394 -76443136 - RMER1C Other Other -54 1288 1198 4 926 219 36 0 0 chr12 44814394 44814422 -76443108 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 4 926 225 254 102 0 chr12 44814462 44814521 -76443009 - RMER1B Other Other -953 113 49 4 926 407 273 95 39 chr12 44814506 44814546 -76442984 - RMER1C Other Other -1048 294 255 4 926 288 0 0 0 chr12 44814546 44814578 -76442952 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 926 1101 233 33 0 chr12 44814578 44814848 -76442682 - RMER1B Other Other -193 873 595 4 926 530 239 58 48 chr12 44814855 44815044 -76442486 + ORR1C2 LTR MaLR 147 337 -47 4 926 335 213 0 0 chr12 44815337 44815398 -76442132 - PB1D10 SINE Alu 0 117 57 4 926 302 333 0 0 chr12 44816220 44816295 -76441235 + PB1D10 SINE Alu 6 80 -37 4 926 195 343 142 50 chr12 44816476 44816919 -76440611 + L2a LINE L2 2699 3186 -240 4 926 21 0 0 0 chr12 44817576 44817597 -76439933 + AT_rich Low_complexity Low_complexity 1 21 0 4 926 3039 247 30 28 chr12 44818463 44819206 -76438324 - RodERV21-int LTR ERV1 -2459 2532 1789 4 926 683 245 14 0 chr12 44820034 44820173 -76437357 + B1_Mur1 SINE Alu 2 142 -7 4 926 940 128 0 28 chr12 44820401 44820546 -76436984 + B1_Mus1 SINE Alu 3 143 -5 4 926 207 0 0 0 chr12 44820551 44820574 -76436956 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 4 926 228 265 110 20 chr12 44820607 44820707 -76436823 + B1F SINE Alu 35 143 -6 4 926 2435 23 0 0 chr12 44820842 44821143 -76436387 - L1_Mm LINE L1 -2148 3735 3435 4 926 4137 78 0 0 chr12 44821143 44821682 -76435848 + L1Md_T LINE L1 6044 6582 0 4 926 24 32 0 0 chr12 44823211 44823242 -76434288 + AT_rich Low_complexity Low_complexity 1 31 0 4 926 390 42 0 0 chr12 44823282 44823330 -76434200 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 926 207 0 0 0 chr12 44823330 44823352 -76434178 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 926 519 271 30 69 chr12 44823497 44823699 -76433831 + B3A SINE B2 2 195 -3 4 926 515 333 79 32 chr12 44823862 44824178 -76433352 - L1MC4 LINE L1 -418 7624 7294 5 926 458 230 14 0 chr12 44824842 44824981 -76432549 + Lx9 LINE L1 7502 7642 -2 5 115 36160 31 0 0 chr12 44825236 44831659 -76425871 - L1Md_T LINE L1 0 6585 66 5 927 1661 178 81 81 chr12 44831770 44832142 -76425388 + RLTR14 LTR ERV1 11 382 0 5 927 4665 62 21 7 chr12 44832597 44833211 -76424319 - L1Md_F2 LINE L1 -12 6570 5948 5 927 610 92 0 0 chr12 44833212 44833299 -76424231 + L1Md_F2 LINE L1 5876 5962 -622 5 927 1887 130 12 21 chr12 44833555 44833893 -76423637 + RMER10B LTR ERVL 1 335 -63 5 927 595 161 124 55 chr12 44833892 44834109 -76423421 - RMER17C LTR ERVK -178 232 1 5 927 274 215 0 31 chr12 44834347 44834443 -76423087 + (TATG)n Simple_repeat Simple_repeat 4 96 0 5 927 357 109 0 0 chr12 44834901 44834965 -76422565 + (A)n Simple_repeat Simple_repeat 1 64 0 5 927 272 225 269 41 chr12 44837401 44837616 -76419914 - Lx9 LINE L1 0 7644 7381 5 927 462 36 0 0 chr12 44837811 44837867 -76419663 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 927 1953 205 61 90 chr12 44838332 44838810 -76418720 + MT2A LTR ERVL 1 464 -69 5 927 403 264 71 16 chr12 44838831 44838958 -76418572 + MTEb LTR MaLR 221 354 -25 5 927 25 0 0 0 chr12 44838992 44839017 -76418513 + AT_rich Low_complexity Low_complexity 1 25 0 5 927 226 197 175 7 chr12 44839034 44839177 -76418353 - Lx9 LINE L1 -27 7617 7451 5 927 217 246 48 27 chr12 44839179 44839325 -76418205 + (CATAT)n Simple_repeat Simple_repeat 2 150 0 5 927 358 264 0 11 chr12 44839336 44839428 -76418102 - Lx9 LINE L1 -213 7431 7341 5 927 363 348 73 32 chr12 44839610 44839906 -76417624 + L1M5 LINE L1 5502 5816 -424 5 927 27609 128 5 51 chr12 44842190 44844619 -76412911 + L1_Mus2 LINE L1 272 2476 -3407 5 927 3147 53 5 8 chr12 44844619 44845016 -76412514 + MTA_Mm LTR MaLR 1 396 0 5 927 27609 128 7 45 chr12 44845016 44846272 -76411258 + L1_Mus2 LINE L1 2477 3721 -2162 5 927 4524 83 3 16 chr12 44846272 44846909 -76410621 + L1_Mus1 LINE L1 5939 6567 0 5 927 27609 109 7 30 chr12 44846909 44849749 -76407781 + L1_Mus2 LINE L1 3722 6555 -11 5 927 35328 36 0 0 chr12 44849751 44855285 -76402245 + L1Md_T LINE L1 1 5589 -297 5 927 8964 6 0 0 chr12 44855285 44856281 -76401249 + L1Md_T LINE L1 5590 6585 0 5 927 26 50 0 0 chr12 44856287 44856327 -76401203 + AT_rich Low_complexity Low_complexity 1 40 0 5 927 7952 36 0 0 chr12 44856753 44857694 -76399836 - L1Md_T LINE L1 0 6582 5642 5 927 180 0 0 0 chr12 44858620 44858640 -76398890 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 927 1224 34 7 0 chr12 44858640 44858786 -76398744 - B1_Mus2 SINE Alu 0 147 1 5 927 1586 32 5 0 chr12 44858786 44858972 -76398558 - B2_Mm1t SINE B2 -2 191 4 5 927 189 74 0 0 chr12 44859846 44859873 -76397657 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 927 264 77 0 0 chr12 44860288 44860327 -76397203 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 927 218 200 0 0 chr12 44860332 44860382 -76397148 + A-rich Low_complexity Low_complexity 1 50 0 5 927 1506 243 61 41 chr12 44860438 44860829 -76396701 - MTD LTR MaLR 0 419 21 5 927 248 340 62 0 chr12 44861791 44861888 -76395642 - Lx7 LINE L1 -388 7308 7206 5 927 781 293 42 34 chr12 44861922 44862187 -76395343 - Lx6 LINE L1 -183 7277 7011 5 927 1041 166 0 92 chr12 44862187 44862426 -76395104 + L1_Mur3 LINE L1 1019 1235 -6477 5 927 265 388 86 43 chr12 44863130 44863432 -76394098 - MamGypLTR2 LTR Gypsy -556 633 319 5 927 230 344 12 55 chr12 44863750 44863913 -76393617 + L2c LINE L2 3194 3349 -38 5 927 23 33 0 0 chr12 44864247 44864277 -76393253 + AT_rich Low_complexity Low_complexity 1 30 0 5 927 1412 224 14 0 chr12 44864968 44865320 -76392210 - Lx9 LINE L1 -1 7643 7287 5 927 260 216 348 9 chr12 44865320 44865432 -76392098 - Lx9 LINE L1 -467 7177 7028 5 927 1771 184 126 5 chr12 44865430 44865835 -76391695 + Lx9 LINE L1 6574 7027 -617 5 927 642 330 5 48 chr12 44866786 44866993 -76390537 + B3A SINE B2 1 198 0 5 927 506 102 66 33 chr12 44867771 44867862 -76389668 + RLTR47_MM LTR ERV1 356 449 -83 5 927 421 259 213 0 chr12 44867943 44868117 -76389413 - B3 SINE B2 -5 211 1 5 927 285 336 98 21 chr12 44869009 44869152 -76388378 + RSINE1 SINE B4 5 158 -7 5 927 579 66 0 0 chr12 44869152 44869228 -76388302 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 927 383 338 7 27 chr12 44870779 44870928 -76386602 + RSINE1 SINE B4 3 148 -17 5 927 572 227 118 7 chr12 44870937 44871157 -76386373 + L1MA4 LINE L1 5293 5608 -689 5 927 500 362 49 56 chr12 44871166 44871450 -76386080 + B4A SINE B4 11 292 0 5 927 897 271 88 23 chr12 44871484 44871870 -76385660 + L1MA4 LINE L1 5603 6013 -287 5 927 1193 54 0 0 chr12 44872419 44872566 -76384964 - B1_Mm SINE Alu 0 147 1 5 927 21 0 0 0 chr12 44873728 44873749 -76383781 + AT_rich Low_complexity Low_complexity 1 21 0 5 927 239 146 18 0 chr12 44874104 44874159 -76383371 + T-rich Low_complexity Low_complexity 4 59 0 5 927 1390 317 67 10 chr12 44875692 44876273 -76381257 - MER67C LTR ERV1 -2 709 96 5 927 723 54 0 0 chr12 44876512 44876604 -76380926 + (GAA)n Simple_repeat Simple_repeat 2 93 0 5 927 9541 199 58 28 chr12 44876620 44879299 -76378231 + Lx5 LINE L1 864 3574 -2303 5 927 3690 185 42 2 chr12 44879297 44880230 -76377300 + Lx5 LINE L1 5086 6068 -982 5 927 4693 137 34 8 chr12 44880290 44881078 -76376452 - RMER17D2 LTR ERVK 0 809 1 5 927 891 245 179 33 chr12 44881123 44881452 -76376078 - RMER4B LTR ERVK -175 410 34 5 927 2580 268 32 13 chr12 44881506 44882545 -76374985 + Lx5 LINE L1 6093 7050 0 5 927 24 0 0 0 chr12 44882602 44882626 -76374904 + AT_rich Low_complexity Low_complexity 1 24 0 5 927 1491 234 204 23 chr12 44883517 44883998 -76373532 - RMER15 LTR ERVL 0 575 8 5 927 28 48 0 0 chr12 44885892 44885934 -76371596 + AT_rich Low_complexity Low_complexity 1 42 0 5 927 585 320 6 34 chr12 44886027 44886205 -76371325 + ID_B1 SINE B4 42 214 -10 5 927 261 118 0 0 chr12 44886548 44886599 -76370931 + (A)n Simple_repeat Simple_repeat 1 51 0 5 927 437 342 19 31 chr12 44886834 44886994 -76370536 - MER5B DNA MER1_type -3 175 18 5 927 556 299 5 57 chr12 44887023 44887232 -76370298 - B3A SINE B2 0 198 1 5 927 2136 179 29 0 chr12 44889530 44889916 -76367614 + RMER20A LTR ERVK 1 397 -119 5 927 297 253 101 0 chr12 44890381 44890460 -76367070 + RMER20A LTR ERVK 430 516 0 5 927 1059 286 90 41 chr12 44890618 44891432 -76366098 - Lx9 LINE L1 0 7644 6791 5 927 295 330 27 9 chr12 44891534 44891644 -76365886 - Lx9 LINE L1 -1040 6604 6493 5 927 1839 223 248 21 chr12 44891664 44892441 -76365089 - L1_Rod LINE L1 -135 5712 4759 5 927 589 199 343 35 chr12 44892992 44893278 -76364252 + ORR1D1 LTR MaLR 1 374 0 5 927 428 260 167 99 chr12 44893482 44893674 -76363856 + RMER15 LTR ERVL 275 479 -96 5 927 236 289 13 0 chr12 44894517 44894593 -76362937 + MIR SINE MIR 183 259 -3 5 927 183 129 0 0 chr12 44894593 44894624 -76362906 + (TTA)n Simple_repeat Simple_repeat 2 32 0 5 927 413 316 30 42 chr12 44895368 44895533 -76361997 + RSINE1 SINE B4 3 165 0 5 927 186 43 0 0 chr12 44895567 44895590 -76361940 + (TAA)n Simple_repeat Simple_repeat 3 25 0 5 927 3344 97 2 2 chr12 44896604 44897061 -76360469 - L1_Mus2 LINE L1 0 6566 6110 5 927 327 167 50 0 chr12 44897437 44897497 -76360033 + B2_Mm2 SINE B2 1 63 -132 5 927 27 87 0 0 chr12 44897625 44897694 -76359836 + AT_rich Low_complexity Low_complexity 1 69 0 5 927 415 298 59 30 chr12 44897696 44897827 -76359703 + B4A SINE B4 8 142 -150 5 927 398 245 91 7 chr12 44897827 44897984 -76359546 - MTE2b LTR MaLR 0 379 205 5 927 242 318 0 96 chr12 44898000 44898094 -76359436 - MTE2b LTR MaLR -127 252 168 5 927 1559 42 0 0 chr12 44898101 44898292 -76359238 - L1Md_A LINE L1 0 6582 6392 5 927 1036 62 7 0 chr12 44898292 44898438 -76359092 + L1Md_F2 LINE L1 5878 6024 -558 5 927 455 308 16 8 chr12 44898438 44898559 -76358971 - MTE2b LTR MaLR -200 179 58 5 927 1077 235 90 118 chr12 44898566 44898711 -76358819 + ORR1D1 LTR MaLR 18 134 -240 5 927 2108 87 7 3 chr12 44898711 44899001 -76358529 - L1_Mus3 LINE L1 -7 6631 6341 5 927 1077 235 90 118 chr12 44899001 44899221 -76358309 + ORR1D1 LTR MaLR 135 373 -1 5 927 284 128 0 21 chr12 44899233 44899281 -76358249 - MTE2b LTR MaLR -329 50 4 5 927 271 105 17 17 chr12 44899345 44899403 -76358127 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 927 225 344 0 0 chr12 44899455 44899545 -76357985 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 5 927 413 48 0 31 chr12 44899555 44899620 -76357910 + (CAGA)n Simple_repeat Simple_repeat 1 63 0 5 927 249 167 0 0 chr12 44899621 44899675 -76357855 + GA-rich Low_complexity Low_complexity 1 54 0 5 927 519 275 52 58 chr12 44900738 44900915 -76356615 - B3 SINE B2 -17 181 5 5 927 2309 157 10 5 chr12 44902263 44902654 -76354876 + RMER12 LTR ERVK 1 393 -929 5 927 23371 145 60 13 chr12 44902669 44905473 -76352057 + L1_Mus3 LINE L1 395 3483 -2400 5 927 383 0 21 0 chr12 44905473 44905520 -76352010 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 5 927 192 40 0 0 chr12 44905520 44905545 -76351985 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5 927 23371 113 58 6 chr12 44905545 44908597 -76348933 + L1_Mus3 LINE L1 3484 6561 -77 5 927 2981 194 102 54 chr12 44908597 44909192 -76348338 + RMER12 LTR ERVK 302 888 -434 5 927 414 85 0 0 chr12 44909192 44909251 -76348279 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 927 2981 194 102 54 chr12 44909251 44909408 -76348122 + RMER12 LTR ERVK 889 1089 -233 5 927 251 286 14 162 chr12 44909399 44909541 -76347989 + RMER12 LTR ERVK 1197 1317 -5 5 927 207 188 31 15 chr12 44909648 44909713 -76347817 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 5 927 369 0 0 0 chr12 44909965 44910006 -76347524 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 927 30 27 0 0 chr12 44910064 44910101 -76347429 + AT_rich Low_complexity Low_complexity 1 37 0 5 927 683 314 43 0 chr12 44910255 44910462 -76347068 + MER2 DNA MER2_type 130 345 0 5 927 919 268 21 33 chr12 44910554 44910886 -76346644 + L1MC4a LINE L1 7553 7880 -2 5 927 292 281 30 36 chr12 44911835 44912001 -76345529 - Lx8 LINE L1 -1199 6274 6110 5 927 1662 307 77 15 chr12 44912012 44912765 -76344765 + Lx8 LINE L1 6640 7439 -34 5 927 227 299 117 49 chr12 44914038 44914200 -76343330 - MIR3 SINE MIR -34 174 2 5 927 273 292 17 26 chr12 44915496 44915612 -76341918 + CT-rich Low_complexity Low_complexity 2 116 0 5 927 285 51 0 0 chr12 44916001 44916040 -76341490 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 927 771 280 67 10 chr12 44916139 44916334 -76341196 + B3A SINE B2 5 210 -6 5 927 203 371 45 0 chr12 44917035 44917124 -76340406 - MER5A DNA MER1_type -2 187 95 6 927 322 95 0 0 chr12 44918574 44918616 -76338914 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 927 534 103 0 0 chr12 44918616 44918694 -76338836 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 6 927 183 339 34 0 chr12 44919047 44919106 -76338424 + MER5A DNA MER1_type 26 86 -103 6 927 391 322 49 0 chr12 44919408 44919551 -76337979 + L1MD2 LINE L1 6194 6343 -16 6 927 3251 68 0 2 chr12 44919559 44919972 -76337558 + L1_Mus1 LINE L1 6155 6566 -1 6 927 26 30 0 0 chr12 44919972 44920005 -76337525 + AT_rich Low_complexity Low_complexity 1 33 0 6 927 673 114 7 78 chr12 44920357 44920499 -76337031 - Lx2 LINE L1 0 6997 6866 6 927 1828 124 3 24 chr12 44920499 44920795 -76336735 + Lx2 LINE L1 6477 6766 -231 6 927 1074 103 0 0 chr12 44920793 44920958 -76336572 + Lx2 LINE L1 6127 6291 -706 6 927 210 37 0 0 chr12 44923062 44923089 -76334441 + (A)n Simple_repeat Simple_repeat 1 27 0 6 927 1221 41 0 13 chr12 44923140 44923289 -76334241 + B1_Mm SINE Alu 1 147 0 6 927 420 271 21 70 chr12 44923708 44923851 -76333679 + B3A SINE B2 56 191 -7 6 927 505 320 83 33 chr12 44923887 44924366 -76333164 - L1ME3A LINE L1 -136 6037 5535 6 927 207 100 0 0 chr12 44924966 44924996 -76332534 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 6 927 263 256 40 91 chr12 44927834 44927933 -76329597 + MIRb SINE MIR 159 252 -16 6 927 721 312 56 4 chr12 44927967 44928198 -76329332 - MLT1C LTR MaLR 0 467 225 6 927 971 276 63 14 chr12 44928198 44928485 -76329045 - RMER15 LTR ERVL 0 575 275 6 927 4753 129 126 11 chr12 44928809 44929668 -76327862 - RMER17B LTR ERVK 0 958 1 6 927 381 289 41 0 chr12 44930433 44930554 -76326976 - MLT1C LTR MaLR -261 129 4 6 927 312 305 111 53 chr12 44930878 44931139 -76326391 - ORR1E LTR MaLR -57 302 20 6 927 372 332 37 106 chr12 44931209 44931500 -76326030 + ORR1E LTR MaLR 66 359 0 6 927 3198 77 7 11 chr12 44932072 44932518 -76325012 - L1_Mus3 LINE L1 0 6638 6195 6 927 3389 28 5 0 chr12 44934450 44934844 -76322686 - MTA_Mm LTR MaLR 0 396 1 6 927 396 0 0 0 chr12 44935098 44935142 -76322388 + (CAAAT)n Simple_repeat Simple_repeat 2 45 0 6 927 3438 242 147 19 chr12 44935284 44937118 -76320412 + RMER1A Other Other 1 1030 0 6 927 2231 179 82 0 chr12 44937252 44937727 -76319803 - L1_Mur1 LINE L1 -243 5643 5130 6 927 6762 82 16 1 chr12 44937727 44938696 -76318834 + L1_Mus4 LINE L1 5651 6634 -2 6 927 251 350 12 0 chr12 44941110 44941190 -76316340 - ID4_ SINE ID 0 83 3 6 927 244 323 31 0 chr12 44943236 44943332 -76314198 + MIRb SINE MIR 40 138 -130 6 927 663 279 110 7 chr12 44943683 44943844 -76313686 + L1MA9 LINE L1 5605 5774 -538 6 927 423 0 0 0 chr12 44943844 44943891 -76313639 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 927 663 279 110 7 chr12 44943891 44944021 -76313509 + L1MA9 LINE L1 5775 5926 -386 6 927 368 284 75 35 chr12 44944096 44944297 -76313233 + L1MA9 LINE L1 5951 6159 -153 6 927 441 36 0 0 chr12 44944585 44944640 -76312890 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 927 1077 97 0 0 chr12 44944640 44944804 -76312726 + (GA)n Simple_repeat Simple_repeat 1 165 0 6 927 243 0 0 0 chr12 44945606 44945633 -76311897 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 6 927 398 308 35 0 chr12 44946077 44946220 -76311310 - B1F SINE Alu 0 149 2 6 927 3156 168 49 32 chr12 44946818 44947451 -76310079 + RLTR40 LTR ERVK 1 644 -173 6 927 1054 204 41 45 chr12 44947424 44947666 -76309864 + RLTR40 LTR ERVK 570 810 -7 6 927 453 19 0 0 chr12 44947685 44947739 -76309791 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 927 243 0 0 0 chr12 44947797 44947824 -76309706 + (A)n Simple_repeat Simple_repeat 1 27 0 6 927 489 200 192 0 chr12 44948169 44948289 -76309241 + URR1B DNA MER1_type 83 225 0 6 927 927 207 123 8 chr12 44948522 44948758 -76308772 - MTD LTR MaLR -3 418 167 6 927 304 297 39 10 chr12 44948880 44948982 -76308548 - MTEb LTR MaLR -2 368 264 6 927 431 164 10 0 chr12 44949078 44949182 -76308348 + GA-rich Low_complexity Low_complexity 1 105 0 6 927 262 194 32 0 chr12 44949199 44949261 -76308269 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 6 927 263 341 11 74 chr12 44949291 44949386 -76308144 + MER44B DNA MER2_type 97 185 -365 6 927 281 317 49 0 chr12 44949437 44949519 -76308011 + MER44B DNA MER2_type 464 549 -1 6 927 230 301 57 19 chr12 44950779 44950938 -76306592 + RLTR21 LTR ERVK 1088 1252 -320 6 927 628 217 68 5 chr12 44951767 44951957 -76305573 + L1MA8 LINE L1 6089 6290 -1 6 927 181 246 0 47 chr12 44952336 44952400 -76305130 - L3 LINE CR1 -456 4033 3973 6 927 26 0 0 0 chr12 44953809 44953835 -76303695 + AT_rich Low_complexity Low_complexity 1 26 0 6 927 1231 239 78 14 chr12 44953835 44953966 -76303564 - Lx9 LINE L1 -22 7622 7469 6 927 195 129 0 0 chr12 44953966 44953997 -76303533 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 927 1231 239 78 14 chr12 44953997 44954302 -76303228 - Lx9 LINE L1 -176 7468 7159 6 927 6365 95 22 11 chr12 44954322 44955260 -76302270 - L1_Mus3 LINE L1 -6 6632 5684 6 927 3956 257 68 30 chr12 44955253 44956968 -76300562 - Lx9 LINE L1 -466 7178 5264 6 927 225 0 0 0 chr12 44957132 44957157 -76300373 + (TAA)n Simple_repeat Simple_repeat 2 26 0 6 928 326 275 89 24 chr12 44958068 44958191 -76299339 + MER67D LTR ERV1 20 150 -364 6 928 403 309 36 29 chr12 44958219 44958359 -76299171 + ID_B1 SINE B4 83 223 -1 6 928 5639 132 47 7 chr12 44958413 44959356 -76298174 + Lx2B LINE L1 6021 7000 0 6 928 30 0 0 0 chr12 44959787 44959817 -76297713 + AT_rich Low_complexity Low_complexity 1 30 0 6 928 413 122 0 13 chr12 44959864 44959939 -76297591 + (GGA)n Simple_repeat Simple_repeat 1 74 0 6 928 201 287 79 85 chr12 44959957 44960003 -76297527 - L4 LINE RTE -84 1945 1906 6 928 1708 152 3 19 chr12 44960003 44960312 -76297218 + Lx2 LINE L1 6694 6997 0 6 928 201 297 302 47 chr12 44960312 44960526 -76297004 - L4 LINE RTE -124 1905 1631 6 928 191 415 0 0 chr12 44960640 44960705 -76296825 - L4 LINE RTE -412 1617 1553 6 928 255 42 83 0 chr12 44961115 44961163 -76296367 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 6 928 347 302 19 31 chr12 44961401 44961532 -76295998 + MTEb LTR MaLR 1 133 -237 6 928 430 261 41 16 chr12 44961782 44961903 -76295627 + MTEb LTR MaLR 256 379 0 6 928 677 301 30 67 chr12 44962607 44962906 -76294624 + B4A SINE B4 1 288 -4 6 928 5139 153 6 8 chr12 44962906 44963764 -76293766 + Lx LINE L1 5799 6654 0 6 928 1348 225 46 46 chr12 44963890 44964258 -76293272 - ORR1D2 LTR MaLR -2 368 1 6 928 368 358 82 44 chr12 44964428 44964793 -76292737 + L1MEg LINE L1 933 1311 -4773 6 928 308 310 33 60 chr12 44966014 44966165 -76291365 + RSINE1 SINE B4 2 148 -17 6 928 417 126 46 0 chr12 44966168 44966255 -76291275 + CT-rich Low_complexity Low_complexity 1 91 0 6 928 301 303 74 47 chr12 44966255 44966404 -76291126 - HAL1-3A_ME LINE L1 -421 2437 2285 6 928 195 129 0 0 chr12 44966404 44966435 -76291095 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 928 197 83 28 0 chr12 44966720 44966756 -76290774 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 6 928 372 169 0 0 chr12 44969186 44969263 -76288267 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 928 1075 294 39 26 chr12 44969763 44970147 -76287383 - RMER5 LTR ERV1 0 534 146 6 928 606 93 20 40 chr12 44970308 44970395 -76287135 + B1_Mus2 SINE Alu 49 137 -10 6 928 524 15 15 0 chr12 44970395 44970460 -76287070 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 6 928 606 93 20 40 chr12 44970460 44970473 -76287057 + B1_Mus2 SINE Alu 138 147 0 6 928 928 80 57 21 chr12 44970489 44970619 -76286911 + B1_Mus1 SINE Alu 1 138 -10 6 928 212 0 36 0 chr12 44970619 44970647 -76286883 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 928 266 339 36 0 chr12 44972723 44972835 -76284695 + MER44D DNA MER2_type 4 119 -586 6 928 23 0 0 0 chr12 44973250 44973273 -76284257 + AT_rich Low_complexity Low_complexity 1 23 0 6 928 409 200 21 0 chr12 44973452 44973547 -76283983 + MER44D DNA MER2_type 532 628 -77 6 928 450 0 0 0 chr12 44973550 44973600 -76283930 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6 928 558 321 19 44 chr12 44973640 44973845 -76283685 - RMER15 LTR ERVL -14 561 362 6 928 315 256 33 0 chr12 44974136 44974226 -76283304 - MTEa LTR MaLR -62 317 225 6 928 1120 278 123 0 chr12 44974270 44974594 -76282936 - ORR1D2 LTR MaLR -4 366 3 6 928 582 305 54 6 chr12 44974595 44974763 -76282767 - MTEa LTR MaLR -184 195 20 6 928 1657 223 91 68 chr12 44975090 44975335 -76282195 + RLTR11A2 LTR ERVK 1 280 -247 6 928 1150 68 0 0 chr12 44975335 44975481 -76282049 + B1_Mus1 SINE Alu 3 148 0 6 928 1657 223 91 68 chr12 44975481 44975750 -76281780 + RLTR11A2 LTR ERVK 281 527 0 6 928 255 193 0 34 chr12 44975875 44975934 -76281596 + MurERV4_19-int LTR ERVK 4486 4542 -1238 6 928 225 244 32 32 chr12 44976871 44976964 -76280566 + L1_Rod LINE L1 5703 5795 -52 6 928 216 0 0 0 chr12 44977041 44977065 -76280465 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 928 273 125 0 0 chr12 44977839 44977895 -76279635 + (T)n Simple_repeat Simple_repeat 1 56 0 6 928 656 274 23 6 chr12 44979597 44979773 -76277757 + B3A SINE B2 19 197 -1 6 928 642 275 104 22 chr12 44979790 44979972 -76277558 + B3 SINE B2 20 216 0 6 928 502 252 13 39 chr12 44980630 44980716 -76276814 - L1MB4 LINE L1 -93 6087 6002 6 928 1085 247 61 36 chr12 44980716 44981077 -76276453 - ORR1D2 LTR MaLR 0 370 1 6 928 502 252 13 39 chr12 44981077 44981143 -76276387 - L1MB4 LINE L1 -179 6001 5940 6 928 1439 258 55 23 chr12 44981541 44981981 -76275549 + Lx7 LINE L1 6893 7346 -350 6 928 483 18 0 0 chr12 44981989 44982045 -76275485 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 928 315 0 0 0 chr12 44982045 44982079 -76275451 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 928 722 210 71 25 chr12 44982101 44982340 -76275190 + Lx7 LINE L1 7447 7696 0 6 928 684 248 13 0 chr12 44982707 44982860 -76274670 + RSINE1 SINE B4 5 159 -6 6 928 312 27 0 0 chr12 44982864 44982901 -76274629 + (TTA)n Simple_repeat Simple_repeat 3 39 0 6 928 898 74 30 0 chr12 44982901 44983036 -76274494 - L1_Mus2 LINE L1 -11 6555 6417 6 928 2536 110 3 5 chr12 44983036 44983411 -76274119 + ORR1A2-int LTR MaLR 1590 1963 0 6 928 2253 126 3 0 chr12 44983411 44983737 -76273793 + ORR1A2 LTR MaLR 1 327 0 6 928 1154 280 75 37 chr12 44984646 44985083 -76272447 + MLT1D LTR MaLR 1 454 -51 6 928 330 91 0 0 chr12 44985279 44985334 -76272196 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 6 928 888 88 23 12 chr12 44985365 44985538 -76271992 + (TC)n Simple_repeat Simple_repeat 2 176 0 7 928 594 353 15 5 chr12 44985825 44986030 -76271500 - MIRb SINE MIR -34 234 28 7 928 35351 43 4 4 chr12 44987430 44992679 -76264851 + L1Md_T LINE L1 245 5589 -297 7 928 8353 36 2 0 chr12 44992679 44993673 -76263857 + L1Md_T LINE L1 5590 6585 0 7 928 533 66 84 9 chr12 44993685 44993839 -76263691 + L1Md_F3 LINE L1 6470 6584 0 7 928 707 336 85 4 chr12 44993839 44994111 -76263419 + MLT1A0 LTR MaLR 72 365 0 7 928 537 58 0 0 chr12 44994474 44994543 -76262987 + (GAAAA)n Simple_repeat Simple_repeat 2 70 0 7 928 228 278 0 0 chr12 44994981 44995035 -76262495 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 928 218 340 114 19 chr12 44995183 44995288 -76262242 + MIR SINE MIR 110 224 -38 7 928 3392 181 85 51 chr12 44996491 44997258 -76260272 - RLTR40 LTR ERVK -24 793 1 7 928 409 347 66 10 chr12 44997274 44997472 -76260058 - L2 LINE L2 -554 2865 2657 7 928 586 295 53 2 chr12 44998038 44998197 -76259333 + B3A SINE B2 2 162 -33 7 928 231 36 0 0 chr12 44998197 44998225 -76259305 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 928 322 312 72 61 chr12 44998225 44998246 -76259284 + B2_Mm2 SINE B2 163 183 -12 7 928 519 320 6 25 chr12 44998330 44998490 -76259040 + RSINE1 SINE B4 2 158 -7 7 928 25 31 0 0 chr12 44998512 44998544 -76258986 + AT_rich Low_complexity Low_complexity 1 32 0 7 928 819 29 0 0 chr12 44998559 44998661 -76258869 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 928 494 350 6 35 chr12 44998663 44998832 -76258698 - RSINE1 SINE B4 0 165 2 7 928 434 17 0 33 chr12 44999190 44999250 -76258280 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 7 928 21 36 0 0 chr12 44999269 44999297 -76258233 + AT_rich Low_complexity Low_complexity 1 28 0 7 928 375 23 0 0 chr12 45000051 45000095 -76257435 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 928 381 162 0 0 chr12 45000171 45000239 -76257291 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 928 231 340 88 18 chr12 45000714 45001214 -76256316 + L1MA6 LINE L1 5755 6289 -11 3 928 852 321 49 35 chr12 45001236 45001520 -76256010 + B4 SINE B4 1 288 -4 4 928 1325 248 77 16 chr12 45001750 45002133 -76255397 - MTE2b LTR MaLR -14 405 1 5 928 240 265 0 0 chr12 45003386 45003435 -76254095 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 928 553 273 57 0 chr12 45004169 45004363 -76253167 + L1MD3 LINE L1 7594 7798 -197 7 928 189 0 0 0 chr12 45004499 45004520 -76253010 + (T)n Simple_repeat Simple_repeat 1 21 0 8 928 246 222 26 77 chr12 45004729 45004807 -76252723 - MLT1C LTR MaLR -64 403 330 9 928 404 273 21 64 chr12 45005151 45005292 -76252238 - ID_B1 SINE B4 -9 215 81 1 928 423 302 0 40 chr12 45006569 45006693 -76250837 + ID_B1 SINE B4 105 223 -1 1 928 1128 86 0 0 chr12 45006719 45006894 -76250636 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 1 928 509 0 16 0 chr12 45006894 45006955 -76250575 + (CAGG)n Simple_repeat Simple_repeat 1 62 0 1 928 205 325 25 0 chr12 45006967 45007047 -76250483 + GA-rich Low_complexity Low_complexity 3 84 0 1 928 23 54 0 0 chr12 45007143 45007180 -76250350 + AT_rich Low_complexity Low_complexity 1 37 0 1 928 213 311 0 0 chr12 45010614 45010675 -76246855 + CT-rich Low_complexity Low_complexity 1 61 0 1 928 856 233 23 37 chr12 45010675 45010893 -76246637 + ORR1D1 LTR MaLR 158 372 -2 1 928 227 350 57 28 chr12 45010895 45011036 -76246494 + RMER15 LTR ERVL 276 420 -155 1 928 396 0 0 0 chr12 45011539 45011583 -76245947 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 928 893 295 80 33 chr12 45013348 45013747 -76243783 + Lx8 LINE L1 7046 7463 -10 2 928 564 301 73 6 chr12 45013764 45014097 -76243433 - Lx7 LINE L1 -1870 5826 5430 2 928 848 288 122 27 chr12 45014145 45014963 -76242567 - Lx7 LINE L1 -1538 4605 3710 2 928 1068 298 104 6 chr12 45015033 45015397 -76242133 - MTD LTR MaLR -2 417 18 2 928 368 318 37 29 chr12 45015407 45015543 -76241987 - MTD-int LTR MaLR 0 1580 1444 2 928 5805 100 19 18 chr12 45015543 45017023 -76240507 - Lx3_Mus LINE L1 -488 6521 5045 2 928 2694 121 65 20 chr12 45017023 45017471 -76240059 + Lx3A LINE L1 6509 6976 -5 2 928 1299 240 100 82 chr12 45017481 45017558 -76239972 - MTD-int LTR MaLR -170 1088 1007 2 928 581 206 86 22 chr12 45017558 45017697 -76239833 + B1_Mur3 SINE Alu 2 149 0 2 928 1299 240 100 82 chr12 45017697 45017863 -76239667 - MTD-int LTR MaLR -252 1006 840 2 928 204 40 0 0 chr12 45017863 45017888 -76239642 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 928 1299 270 85 83 chr12 45017888 45018372 -76239158 - MTD-int LTR MaLR -419 839 5 2 928 498 255 142 101 chr12 45018378 45018596 -76238934 - MTD LTR MaLR -1 418 192 2 928 810 289 74 21 chr12 45018875 45019214 -76238316 - ORR1E LTR MaLR -2 357 1 2 928 279 0 0 0 chr12 45019599 45019630 -76237900 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 928 1322 246 163 96 chr12 45021613 45022185 -76235345 - RLTR18B LTR ERVK -47 569 4 2 928 302 143 0 41 chr12 45022253 45022326 -76235204 + T-rich Low_complexity Low_complexity 1 70 0 3 928 4300 71 75 2 chr12 45022329 45022906 -76234624 - L1_Mus2 LINE L1 -2 6564 5946 3 928 997 66 0 7 chr12 45022906 45023044 -76234486 + L1_Mus2 LINE L1 5801 5937 -629 3 928 229 318 94 16 chr12 45023174 45023302 -76234228 + Charlie7 DNA MER1_type 354 491 -2121 3 928 748 122 56 28 chr12 45024427 45024570 -76232960 + B1_Mur3 SINE Alu 2 148 -1 3 928 181 93 0 85 chr12 45024573 45024620 -76232910 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 928 186 189 0 0 chr12 45025170 45025207 -76232323 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 3 928 822 271 20 5 chr12 45025252 45025452 -76232078 - MER57E2 LTR ERV1 -81 321 119 3 928 307 309 124 0 chr12 45026063 45026160 -76231370 - RSINE1 SINE B4 -44 121 13 3 928 312 27 0 0 chr12 45026171 45026208 -76231322 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 3 928 356 333 71 21 chr12 45026214 45026355 -76231175 - B1F SINE Alu 0 149 2 3 928 1127 170 37 28 chr12 45026640 45026858 -76230672 + URR1A DNA MER1_type 7 226 0 4 928 648 344 65 14 chr12 45026974 45027387 -76230143 - Lx8 LINE L1 -198 7275 6842 4 928 189 0 0 0 chr12 45027574 45027595 -76229935 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4 928 816 293 108 18 chr12 45027884 45028273 -76229257 - Lx8 LINE L1 -660 6813 6390 4 928 294 102 163 0 chr12 45028298 45028347 -76229183 - MTD LTR MaLR 0 419 363 4 928 1992 158 9 3 chr12 45028351 45028668 -76228862 - ORR1A2 LTR MaLR -8 319 1 4 928 1837 230 8 5 chr12 45028668 45029034 -76228496 - MTD LTR MaLR -52 367 1 4 928 348 317 8 8 chr12 45029144 45029265 -76228265 - Lx8 LINE L1 -1155 6318 6198 4 928 509 252 81 21 chr12 45029420 45029711 -76227819 - Lx8 LINE L1 -1554 5919 5588 4 928 33751 48 0 3 chr12 45029857 45035275 -76222255 + L1Md_T LINE L1 92 5589 -297 4 928 8491 32 0 0 chr12 45035275 45036271 -76221259 + L1Md_T LINE L1 5590 6585 0 4 928 215 258 16 0 chr12 45036523 45036585 -76220945 + GA-rich Low_complexity Low_complexity 2 64 0 4 928 218 242 162 0 chr12 45036785 45036884 -76220646 + MIRb SINE MIR 78 192 -70 4 928 39 88 0 0 chr12 45037529 45037631 -76219899 + AT_rich Low_complexity Low_complexity 1 102 0 4 928 225 178 0 0 chr12 45038708 45038753 -76218777 + (TTG)n Simple_repeat Simple_repeat 2 46 0 4 928 236 260 31 0 chr12 45038754 45038850 -76218680 - Lx6 LINE L1 -26 7434 7336 5 928 734 282 114 32 chr12 45039780 45040026 -76217504 + MTC LTR MaLR 5 270 -151 5 928 589 305 28 22 chr12 45040357 45040535 -76216995 + B4A SINE B4 108 286 -6 5 928 185 154 26 0 chr12 45040550 45040589 -76216941 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 928 196 354 43 65 chr12 45041250 45041389 -76216141 + L2a LINE L2 3287 3422 -4 5 928 182 358 35 63 chr12 45041514 45041657 -76215873 + MER5B DNA MER1_type 34 172 -6 5 928 587 263 1 3 chr12 45042741 45042870 -76214660 + B1F SINE Alu 1 127 -20 5 928 357 374 76 30 chr12 45042931 45043168 -76214362 + MLT1H1 LTR MaLR 307 554 -1 5 928 38 51 0 0 chr12 45043353 45043412 -76214118 + AT_rich Low_complexity Low_complexity 1 59 0 5 928 26 50 0 0 chr12 45044374 45044414 -76213116 + AT_rich Low_complexity Low_complexity 1 40 0 5 928 485 285 41 0 chr12 45044466 45044589 -76212941 - RSINE1 SINE B4 -36 129 2 6 928 2523 151 13 161 chr12 45044624 45044882 -76212648 + RLTR28 LTR ERVL 1 246 -278 6 928 1119 90 7 0 chr12 45044882 45045027 -76212503 + B1_Mus1 SINE Alu 3 148 0 6 928 2523 151 13 161 chr12 45045027 45045383 -76212147 + RLTR28 LTR ERVL 247 524 0 6 928 24 53 0 0 chr12 45045488 45045526 -76212004 + AT_rich Low_complexity Low_complexity 1 38 0 6 928 314 208 0 0 chr12 45045526 45045603 -76211927 - Lx3C LINE L1 0 6976 6900 6 928 5091 108 40 19 chr12 45045603 45046197 -76211333 - Lx3B LINE L1 -519 6454 5832 6 928 2192 94 9 41 chr12 45046197 45046540 -76210990 - L1Md_F2 LINE L1 0 6582 6251 6 928 5091 78 9 23 chr12 45046540 45047134 -76210396 - Lx3B LINE L1 -52 5834 5250 6 928 367 281 175 0 chr12 45047186 45047300 -76210230 + ID_B1 SINE B4 84 217 -7 6 928 303 28 0 0 chr12 45047438 45047474 -76210056 + (CATA)n Simple_repeat Simple_repeat 4 39 0 6 928 249 242 121 0 chr12 45048989 45049055 -76208475 + B4 SINE B4 201 274 -18 6 928 438 53 0 0 chr12 45049083 45049140 -76208390 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 928 258 269 0 0 chr12 45049163 45049230 -76208300 - L2 LINE L2 -981 2438 2372 7 928 337 362 11 65 chr12 45050599 45050785 -76206745 + MIR3 SINE MIR 22 197 -11 7 928 895 257 275 77 chr12 45052181 45052613 -76204917 + RMER15 LTR ERVL 1 530 -45 7 928 537 68 0 0 chr12 45052613 45052687 -76204843 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 928 895 274 62 78 chr12 45052687 45052739 -76204791 + RMER15 LTR ERVL 531 570 -5 7 928 1163 277 91 14 chr12 45053201 45053553 -76203977 + MTEb LTR MaLR 1 379 0 7 928 2887 66 200 9 chr12 45054449 45054879 -76202651 - RLTR1B LTR ERV1 0 512 1 7 928 63622 20 0 0 chr12 45054879 45062434 -76195096 - MMERGLN-int LTR ERV1 0 7556 1 7 928 3109 66 200 9 chr12 45062434 45062864 -76194666 - RLTR1B LTR ERV1 0 512 1 7 928 858 126 0 0 chr12 45065510 45065645 -76191885 + (GGAA)n Simple_repeat Simple_repeat 3 137 0 7 928 564 15 0 0 chr12 45065656 45065721 -76191809 + (GAGAA)n Simple_repeat Simple_repeat 1 65 0 7 928 1175 75 7 0 chr12 45067387 45067533 -76189997 + B1_Mm SINE Alu 1 147 0 7 928 327 104 0 0 chr12 45067533 45067581 -76189949 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 8 928 1680 50 0 15 chr12 45068082 45068286 -76189244 + L1Md_T LINE L1 6379 6579 -3 8 928 3072 65 34 2 chr12 45069923 45070367 -76187163 + L1Md_T LINE L1 214 671 -6053 8 928 31387 25 0 0 chr12 45070361 45073985 -76183545 + L1Md_T LINE L1 1962 5586 -297 8 928 8842 38 0 4 chr12 45073985 45074984 -76182546 + L1Md_T LINE L1 5587 6581 -1 8 928 272 27 27 0 chr12 45075183 45075220 -76182310 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 928 8921 138 35 19 chr12 45077086 45078862 -76178668 + Lx2A LINE L1 4918 6707 -301 8 928 3690 28 0 0 chr12 45078862 45079258 -76178272 - MTA_Mm LTR MaLR 0 396 1 8 928 8921 115 42 26 chr12 45079258 45079539 -76177991 + Lx2A LINE L1 6708 7008 0 8 928 3479 249 57 97 chr12 45079718 45080920 -76176610 - Lx5 LINE L1 -8 7688 5896 8 928 400 318 74 22 chr12 45081047 45081182 -76176348 - 7SK RNA RNA -189 142 1 8 928 230 81 27 0 chr12 45081227 45081264 -76176266 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 8 928 530 112 25 0 chr12 45081534 45081614 -76175916 - BC1_Mm scRNA scRNA -70 82 1 8 928 216 233 0 0 chr12 45082411 45082484 -76175046 + CT-rich Low_complexity Low_complexity 1 73 0 9 928 360 0 0 0 chr12 45083174 45083214 -76174316 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 9 928 6391 83 14 98 chr12 45083214 45084185 -76173345 + RLTR13B1 LTR ERVK 3 892 -1 9 928 369 0 0 0 chr12 45084185 45084226 -76173304 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 9 928 1155 82 14 0 chr12 45084952 45085098 -76172432 + B1_Mus1 SINE Alu 1 148 0 9 928 777 345 5 5 chr12 45085120 45085341 -76172189 - ID_B1 SINE B4 -1 223 3 9 928 213 39 0 0 chr12 45086370 45086396 -76171134 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 9 928 2185 60 0 11 chr12 45086728 45086997 -76170533 + L1Md_T LINE L1 6317 6582 0 9 928 3593 104 0 22 chr12 45087340 45087841 -76169689 - L1Md_F2 LINE L1 -2 6580 6091 9 928 3512 67 0 0 chr12 45087841 45088272 -76169258 + L1Md_F2 LINE L1 5594 6024 -558 9 14 29869 88 13 78 chr12 45088266 45089958 -76167572 + L1Md_F2 LINE L1 604 2311 -3572 9 929 332 48 0 0 chr12 45089958 45090000 -76167530 + RLTR10B LTR ERVK 1 42 -250 1 929 2012 96 83 46 chr12 45090007 45090355 -76167175 + RLTR10B2 LTR ERVK 5 365 0 1 929 29869 88 13 78 chr12 45090355 45093589 -76163941 + L1Md_F2 LINE L1 2319 5587 -296 9 929 7362 104 2 12 chr12 45093590 45094592 -76162938 + L1Md_F2 LINE L1 5589 6580 -2 9 929 672 13 0 0 chr12 45094601 45094678 -76162852 + L1Md_F2 LINE L1 6005 6081 -501 1 929 434 293 140 51 chr12 45094711 45094926 -76162604 - B3A SINE B2 -8 208 1 1 929 1783 244 40 15 chr12 45095469 45095873 -76161657 - MTD LTR MaLR -5 414 1 1 929 363 63 0 0 chr12 45096485 45096548 -76160982 + L1_Mus4 LINE L1 6574 6636 0 1 929 2544 24 10 0 chr12 45096975 45097270 -76160260 + L1Md_T LINE L1 5288 5585 -298 1 929 8686 48 0 1 chr12 45097271 45098268 -76159262 + L1Md_T LINE L1 5587 6582 0 1 929 184 273 0 18 chr12 45099239 45099295 -76158235 + L3 LINE CR1 2492 2546 -1943 1 929 496 240 23 68 chr12 45099361 45099580 -76157950 + L1MCc LINE L1 23 231 -6192 1 929 1774 235 62 69 chr12 45099940 45100521 -76157009 - RMER4B LTR ERVK -3 582 6 1 929 288 0 0 0 chr12 45100523 45100555 -76156975 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 929 719 254 57 45 chr12 45100570 45100817 -76156713 - RLTR40 LTR ERVK -549 268 19 1 929 183 80 0 0 chr12 45103119 45103144 -76154386 + (T)n Simple_repeat Simple_repeat 1 25 0 1 929 300 321 51 19 chr12 45103824 45104011 -76153519 - MIR SINE MIR -62 206 20 1 929 198 138 34 17 chr12 45104139 45104198 -76153332 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 929 258 250 18 0 chr12 45104448 45104504 -76153026 + ORR1E LTR MaLR 3 59 -300 1 929 22 35 0 0 chr12 45105209 45105238 -76152292 + AT_rich Low_complexity Low_complexity 1 29 0 1 929 266 0 29 0 chr12 45105827 45105861 -76151669 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 1 929 213 130 27 55 chr12 45105871 45105944 -76151586 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 929 258 322 0 33 chr12 45106142 45106232 -76151298 + GA-rich Low_complexity Low_complexity 2 88 0 1 929 621 136 0 0 chr12 45106596 45106699 -76150831 + (TTGG)n Simple_repeat Simple_repeat 2 104 0 1 929 185 377 144 23 chr12 45106923 45107276 -76150254 + L2a LINE L2 1863 2258 -1161 1 929 207 360 40 0 chr12 45107280 45107380 -76150150 + L2a LINE L2 3323 3426 0 1 929 28261 78 5 2 chr12 45109738 45114701 -76142829 + L1Md_F2 LINE L1 242 5589 -297 1 929 7377 57 31 2 chr12 45114702 45115655 -76141875 + L1Md_F2 LINE L1 5591 6571 -14 1 929 202 133 39 39 chr12 45116865 45116943 -76140587 + (CATATA)n Simple_repeat Simple_repeat 4 81 0 1 929 585 118 0 0 chr12 45117141 45117251 -76140279 + (TC)n Simple_repeat Simple_repeat 2 111 0 1 929 396 0 0 0 chr12 45117251 45117295 -76140235 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 929 2649 219 148 23 chr12 45118220 45119011 -76138519 - RMER19B LTR ERVK -12 890 1 1 929 1444 222 83 15 chr12 45120689 45120854 -76136676 + ORR1D1 LTR MaLR 1 182 -192 1 929 558 0 0 0 chr12 45120854 45120916 -76136614 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 929 1444 222 83 15 chr12 45120916 45121088 -76136442 + ORR1D1 LTR MaLR 183 361 -13 1 929 239 311 0 22 chr12 45121595 45121687 -76135843 + GA-rich Low_complexity Low_complexity 1 90 0 1 929 573 142 16 8 chr12 45121938 45122066 -76135464 + (TG)n Simple_repeat Simple_repeat 2 130 0 1 929 230 81 27 0 chr12 45122095 45122132 -76135398 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 929 183 288 0 76 chr12 45122464 45122543 -76134987 - L2c LINE L2 -343 3044 2972 1 929 381 307 102 81 chr12 45122958 45123280 -76134250 - ORR1E LTR MaLR -10 349 21 1 929 255 278 32 32 chr12 45123502 45123595 -76133935 + MLT1K LTR MaLR 1 93 -502 1 929 202 200 40 0 chr12 45124613 45124663 -76132867 + A-rich Low_complexity Low_complexity 4 55 0 1 929 267 337 122 5 chr12 45124883 45125071 -76132459 + L2a LINE L2 2631 2840 -579 1 929 284 372 0 0 chr12 45125134 45125228 -76132302 + MER5A DNA MER1_type 22 115 -74 1 929 344 363 124 33 chr12 45125438 45125737 -76131793 + L2a LINE L2 3019 3344 -82 1 929 216 0 0 0 chr12 45125794 45125818 -76131712 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1 929 5435 213 78 18 chr12 45126144 45127355 -76130175 + ORR1B2-int LTR MaLR 129 1425 -84 1 929 2453 55 48 0 chr12 45127355 45127665 -76129865 - IAPLTR2b LTR ERVK -2 325 1 1 929 5435 213 78 18 chr12 45127665 45127755 -76129775 + ORR1B2-int LTR MaLR 1426 1509 0 1 929 1595 212 6 66 chr12 45127755 45128064 -76129466 + ORR1B2 LTR MaLR 1 290 -77 1 929 4494 16 2 0 chr12 45128064 45128574 -76128956 - L1Md_A LINE L1 0 6582 6072 1 929 1595 212 6 66 chr12 45128574 45128613 -76128917 + ORR1B2 LTR MaLR 291 328 -39 1 929 867 138 167 10 chr12 45128613 45128811 -76128719 + Lx4A LINE L1 6828 7056 -2 1 929 329 84 9 20 chr12 45128827 45128883 -76128647 + ORR1B2 LTR MaLR 308 378 0 1 929 196 30 61 0 chr12 45128905 45128938 -76128592 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 929 985 204 103 70 chr12 45129227 45129527 -76128003 + RLTR20C LTR ERVK 1 310 -224 1 929 468 210 167 8 chr12 45129521 45129576 -76127954 + RLTR20C LTR ERVK 416 479 -99 1 929 396 0 0 0 chr12 45129576 45129620 -76127910 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 929 468 210 167 8 chr12 45129620 45129684 -76127846 + RLTR20C LTR ERVK 480 553 -25 1 929 1638 185 37 30 chr12 45129684 45130091 -76127439 - RMER17C LTR ERVK 0 410 1 1 929 2337 139 123 22 chr12 45130092 45130733 -76126797 - RMER17C-int LTR ERVK -1 3237 2532 1 929 990 131 74 0 chr12 45130730 45130906 -76126624 - RMER17C-int LTR ERVK -888 2350 2162 1 929 1476 142 146 21 chr12 45130931 45131410 -76126120 - RMER17C-int LTR ERVK -1215 2023 1485 1 929 365 290 37 0 chr12 45133176 45133283 -76124247 + PB1D10 SINE Alu 2 112 -5 1 929 550 353 11 16 chr12 45133308 45133498 -76124032 + B4A SINE B4 17 205 -87 1 929 5676 102 25 2 chr12 45134133 45134948 -76122582 + Lx LINE L1 5816 6648 -6 1 929 793 325 96 9 chr12 45135234 45135557 -76121973 + MLT1A0 LTR MaLR 15 365 0 1 929 585 0 0 0 chr12 45136239 45136304 -76121226 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 929 21 36 0 0 chr12 45136924 45136952 -76120578 + AT_rich Low_complexity Low_complexity 1 28 0 1 929 750 293 165 25 chr12 45136989 45137304 -76120226 + MTEa LTR MaLR 9 367 -12 1 929 1843 199 78 91 chr12 45137473 45137625 -76119905 - RLTR12B LTR ERVK -9 519 364 1 929 2264 81 3 15 chr12 45137625 45137952 -76119578 - L1Md_F2 LINE L1 -1 6581 6259 1 929 1843 199 78 91 chr12 45137952 45137990 -76119540 - RLTR12B LTR ERVK -165 363 346 1 929 2771 99 27 88 chr12 45137990 45138280 -76119250 - L1_Mus3 LINE L1 0 6638 6388 1 929 1079 71 7 14 chr12 45138280 45138423 -76119107 - B1_Mus2 SINE Alu -5 142 1 1 929 2771 99 27 88 chr12 45138423 45138618 -76118912 - L1_Mus3 LINE L1 -251 6387 6183 1 929 1843 199 78 91 chr12 45138618 45138952 -76118578 - RLTR12B LTR ERVK -183 345 2 1 929 494 271 17 51 chr12 45139087 45139262 -76118268 + Lx8 LINE L1 6982 7150 -323 1 929 378 146 231 60 chr12 45139284 45139401 -76118129 + Lx8 LINE L1 7235 7371 -102 1 929 273 29 0 0 chr12 45140261 45140295 -76117235 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 929 496 338 20 27 chr12 45140304 45140453 -76117077 - RSINE1 SINE B4 -15 150 3 1 929 905 50 0 8 chr12 45140629 45140749 -76116781 + (GAA)n Simple_repeat Simple_repeat 2 120 0 1 929 3090 171 7 6 chr12 45140990 45141536 -76115994 + Lx LINE L1 6108 6654 0 1 929 405 86 0 0 chr12 45142025 45142083 -76115447 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 929 1004 146 6 0 chr12 45142085 45142263 -76115267 + GA-rich Low_complexity Low_complexity 2 180 0 1 929 411 360 45 62 chr12 45142584 45142988 -76114542 + LTR40b LTR ERVL 62 458 -4 1 929 261 300 156 7 chr12 45143037 45143306 -76114224 + L1MEc LINE L1 35 343 -6057 1 929 2556 61 6 52 chr12 45143511 45143876 -76113654 - L1_Mus2 LINE L1 -1 6565 6218 1 929 21 0 0 0 chr12 45145256 45145277 -76112253 + AT_rich Low_complexity Low_complexity 1 21 0 1 929 654 263 67 0 chr12 45146957 45147151 -76110379 + B3 SINE B2 4 210 -6 1 929 192 246 54 68 chr12 45147582 45147656 -76109874 - MIR SINE MIR -60 148 76 1 929 5182 72 12 17 chr12 45147692 45148413 -76109117 - L1Md_F2 LINE L1 -2 6580 5863 1 929 260 98 0 0 chr12 45148415 45148456 -76109074 - L1_Mm LINE L1 -1144 4739 4699 1 929 323 325 50 166 chr12 45148503 45148789 -76108741 - MTEb LTR MaLR -14 365 77 1 929 783 217 56 0 chr12 45149116 45149259 -76108271 + B3 SINE B2 4 154 -62 1 929 806 268 141 0 chr12 45149339 45149623 -76107907 + Lx8 LINE L1 6777 7100 -373 1 929 510 167 12 0 chr12 45149629 45149713 -76107817 - ORR1E LTR MaLR -6 353 269 1 929 638 301 129 39 chr12 45149695 45149951 -76107579 - MTE-int LTR MaLR -489 1091 813 1 929 596 321 106 9 chr12 45149932 45150158 -76107372 - MTE-int LTR MaLR -916 664 417 1 929 450 0 0 0 chr12 45150163 45150213 -76107317 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 929 1263 91 0 5 chr12 45151156 45151366 -76106164 + (GAA)n Simple_repeat Simple_repeat 1 209 0 1 929 281 348 75 19 chr12 45154341 45154502 -76103028 + LTR33 LTR ERVL 15 184 -331 1 929 355 242 88 29 chr12 45154962 45155064 -76102466 + B1F SINE Alu 37 144 -5 1 929 180 375 0 0 chr12 45156379 45156443 -76101087 + L2a LINE L2 3019 3082 -337 1 929 272 189 33 33 chr12 45156543 45156696 -76100834 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 929 205 311 16 47 chr12 45157031 45157159 -76100371 + L2a LINE L2 3215 3338 -88 1 929 1115 308 7 7 chr12 45157400 45157675 -76099855 + B4A SINE B4 11 285 -7 1 929 278 298 0 28 chr12 45158966 45159073 -76098457 + GA-rich Low_complexity Low_complexity 2 105 0 1 929 3271 26 5 0 chr12 45160656 45161046 -76096484 + L1Md_F2 LINE L1 6191 6582 0 1 929 653 252 8 0 chr12 45163555 45163682 -76093848 + B1_Mur1 SINE Alu 1 128 -21 1 929 247 283 70 10 chr12 45164432 45164532 -76092998 + MIR SINE MIR 41 146 -62 1 929 262 197 95 40 chr12 45164635 45164709 -76092821 - ID4 SINE ID -2 81 4 1 929 612 0 0 0 chr12 45164958 45165026 -76092504 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 929 34358 57 4 5 chr12 45165294 45170627 -76086903 + L1_Mus1 LINE L1 171 5590 -296 1 929 8447 30 0 0 chr12 45170627 45171611 -76085919 + L1Md_T LINE L1 5588 6571 -11 1 929 34358 61 2 7 chr12 45171611 45172593 -76084937 + L1_Mus1 LINE L1 5591 6570 0 1 929 680 316 60 50 chr12 45173375 45173692 -76083838 + MTE2a LTR MaLR 60 379 0 1 929 359 282 48 0 chr12 45173915 45174039 -76083491 - MLT1D LTR MaLR 0 505 376 1 929 262 120 0 91 chr12 45174038 45174093 -76083437 - ID_B1 SINE B4 -1 223 174 1 929 357 193 0 0 chr12 45174046 45174103 -76083427 - PB1D9 SINE Alu -7 113 57 1 929 238 280 29 114 chr12 45174371 45174476 -76083054 + ORR1C2 LTR MaLR 95 190 -194 1 929 225 269 58 29 chr12 45174525 45174594 -76082936 + ORR1C2 LTR MaLR 295 365 -14 1 929 808 294 46 39 chr12 45174653 45174936 -76082594 + B4 SINE B4 5 289 -3 1 929 221 210 16 0 chr12 45174980 45175042 -76082488 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 929 1284 143 151 8 chr12 45175042 45175281 -76082249 + RMER4A LTR ERVK 70 342 -124 1 929 21 0 0 0 chr12 45175326 45175347 -76082183 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 1215 55 0 0 chr12 45175559 45175704 -76081826 - B1_Mm SINE Alu -1 146 2 2 929 231 250 0 48 chr12 45176047 45176110 -76081420 + MTEa LTR MaLR 272 331 -48 2 929 443 388 88 27 chr12 45176309 45176603 -76080927 + LTR33 LTR ERVL 73 384 -131 2 929 40 37 0 0 chr12 45176735 45176789 -76080741 + AT_rich Low_complexity Low_complexity 1 54 0 2 929 905 118 103 19 chr12 45176824 45176964 -76080566 + B2_Mm2 SINE B2 2 157 -38 2 929 194 0 0 37 chr12 45176964 45176991 -76080539 + (CAGA)n Simple_repeat Simple_repeat 4 29 0 2 929 905 118 103 19 chr12 45176991 45177006 -76080524 + B2_Mm2 SINE B2 158 170 -25 2 929 279 0 0 0 chr12 45177692 45177723 -76079807 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2 929 27 0 0 0 chr12 45177737 45177764 -76079766 + AT_rich Low_complexity Low_complexity 1 27 0 2 929 233 262 0 76 chr12 45178082 45178148 -76079382 - MLT1J LTR MaLR -451 61 1 2 929 395 376 71 39 chr12 45178595 45178932 -76078598 - MLT1J1 LTR MaLR -16 428 81 2 929 1066 68 0 52 chr12 45178985 45179139 -76078391 - B1_Mus2 SINE Alu 0 147 2 2 929 208 100 24 24 chr12 45179606 45179647 -76077883 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 929 225 190 52 0 chr12 45179648 45179706 -76077824 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2 929 267 103 0 0 chr12 45180231 45180270 -76077260 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 929 514 329 56 21 chr12 45181654 45181797 -76075733 + RSINE1 SINE B4 18 165 0 2 929 206 193 17 34 chr12 45181825 45181884 -76075646 + (ATG)n Simple_repeat Simple_repeat 1 58 0 2 929 204 127 36 18 chr12 45181886 45181942 -76075588 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 2 929 268 267 73 37 chr12 45182117 45182226 -76075304 + L2 LINE L2 2319 2431 -988 2 929 371 65 16 0 chr12 45183407 45183469 -76074061 - L1Md_F2 LINE L1 -2 6580 6518 2 929 277 250 0 0 chr12 45184282 45184334 -76073196 - Tigger5 DNA MER2_type -5 2401 2350 2 929 602 307 36 16 chr12 45184384 45184576 -76072954 - Tigger5 DNA MER2_type -2167 239 44 2 929 345 195 143 99 chr12 45185034 45185113 -76072417 + B4A SINE B4 198 282 -10 2 929 486 0 0 0 chr12 45185113 45185167 -76072363 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 929 345 195 143 99 chr12 45185167 45185178 -76072352 + B4A SINE B4 283 292 0 2 929 666 25 0 0 chr12 45185200 45185280 -76072250 + (CCA)n Simple_repeat Simple_repeat 1 80 0 2 929 210 196 39 0 chr12 45185287 45185338 -76072192 + GA-rich Low_complexity Low_complexity 2 54 0 2 929 440 217 22 3 chr12 45185422 45185527 -76072003 + ORR1E LTR MaLR 1 105 -265 2 929 331 316 21 10 chr12 45185590 45185686 -76071844 + ORR1E LTR MaLR 274 370 -9 2 929 243 0 0 0 chr12 45186686 45186713 -76070817 + (A)n Simple_repeat Simple_repeat 1 27 0 2 929 22 94 0 0 chr12 45188239 45188303 -76069227 + AT_rich Low_complexity Low_complexity 1 64 0 2 929 21 0 0 0 chr12 45188325 45188346 -76069184 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 303 348 0 32 chr12 45188361 45188456 -76069074 + PB1D10 SINE Alu 9 100 -17 2 929 185 267 66 16 chr12 45189270 45189331 -76068199 + MIRb SINE MIR 134 197 -71 2 929 826 283 80 78 chr12 45189925 45190385 -76067145 - RMER15 LTR ERVL -27 548 1 2 929 635 283 84 42 chr12 45190551 45190813 -76066717 + B4A SINE B4 2 274 -18 2 929 308 343 84 25 chr12 45191487 45191690 -76065840 - L2 LINE L2 -534 2885 2671 2 929 231 152 0 0 chr12 45191986 45192032 -76065498 - Lx8 LINE L1 -8 7465 7420 2 929 2753 300 38 21 chr12 45192176 45193163 -76064367 - Lx8 LINE L1 -234 7239 6237 2 929 352 207 278 40 chr12 45193821 45193972 -76063558 - MIRb SINE MIR -51 217 31 2 929 3492 81 4 30 chr12 45194671 45195170 -76062360 - Lx LINE L1 -3 6651 6166 2 929 431 314 69 13 chr12 45195378 45195681 -76061849 + L1M4 LINE L1 4980 5299 -847 2 929 876 274 67 3 chr12 45195746 45196046 -76061484 + Lx7 LINE L1 6706 7024 -672 2 929 3425 46 0 2 chr12 45196634 45197052 -76060478 - L1_Mus1 LINE L1 -2 6565 6149 2 929 397 145 13 0 chr12 45197052 45197128 -76060402 + L1_Mm LINE L1 5246 5322 -561 2 929 364 203 0 0 chr12 45197325 45197384 -76060146 + PB1D9 SINE Alu 1 59 -61 2 929 1614 80 0 22 chr12 45197406 45197701 -76059829 + L1Md_F2 LINE L1 6357 6582 0 2 929 248 374 6 19 chr12 45197704 45197862 -76059668 + RSINE1 SINE B4 3 158 -7 2 929 1541 307 72 41 chr12 45197945 45199354 -76058176 + L1_Mur3 LINE L1 1511 2963 -2917 2 929 746 44 200 4 chr12 45199351 45199476 -76058054 + L1_Mus1 LINE L1 6427 6636 0 2 929 484 235 138 7 chr12 45199480 45199763 -76057767 + L1M2 LINE L1 2983 3302 -2841 2 929 411 320 55 0 chr12 45199769 45199897 -76057633 + RSINE1 SINE B4 14 148 -17 2 929 1277 295 87 3 chr12 45199913 45200525 -76057005 + L1_Mur3 LINE L1 5042 5704 -176 2 929 3545 271 95 9 chr12 45200774 45201906 -76055624 + Lx8 LINE L1 6113 7346 -127 2 929 348 24 0 0 chr12 45201906 45201947 -76055583 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 929 3545 271 95 9 chr12 45201947 45202063 -76055467 + Lx8 LINE L1 7347 7469 -4 2 929 203 204 23 0 chr12 45202113 45202157 -76055373 + GA-rich Low_complexity Low_complexity 4 48 0 2 929 273 146 0 0 chr12 45202558 45202606 -76054924 + (A)n Simple_repeat Simple_repeat 1 48 0 2 929 762 310 77 4 chr12 45202683 45202955 -76054575 + B4A SINE B4 1 292 0 2 929 488 137 10 0 chr12 45203063 45203165 -76054365 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 929 630 277 23 56 chr12 45203229 45203443 -76054087 - B4 SINE B4 -85 207 1 2 929 209 261 0 0 chr12 45204108 45204154 -76053376 - MIRm SINE MIR -20 256 211 2 929 229 245 0 0 chr12 45204636 45204685 -76052845 - L2 LINE L2 -947 2472 2424 2 929 709 307 36 24 chr12 45204827 45205074 -76052456 - MER2 DNA MER2_type -6 339 90 2 929 188 325 85 8 chr12 45205177 45205295 -76052235 - MIR SINE MIR -21 241 115 2 929 1141 277 82 14 chr12 45207837 45208251 -76049279 + Lx8 LINE L1 7030 7471 -2 2 929 468 287 63 27 chr12 45208303 45208525 -76049005 - L1MC1 LINE L1 -42 6291 6062 2 929 360 204 122 31 chr12 45209050 45209173 -76048357 + MLT1D LTR MaLR 390 625 -2 2 929 27 0 0 0 chr12 45209415 45209442 -76048088 + AT_rich Low_complexity Low_complexity 1 27 0 2 929 690 175 9 0 chr12 45209580 45209694 -76047836 + B1_Mur4 SINE Alu 11 125 -25 2 929 2488 38 0 3 chr12 45209902 45210219 -76047311 + L1Md_F2 LINE L1 5271 5586 -297 2 929 8279 35 3 5 chr12 45210219 45211213 -76046317 + L1Md_F2 LINE L1 5587 6578 -4 2 929 307 143 79 0 chr12 45211275 45211338 -76046192 - RLTR42-int LTR ERVK -3914 1608 1541 2 929 6973 102 35 2 chr12 45211393 45212420 -76045110 - Lx2A LINE L1 -9 6999 5939 2 929 273 57 0 0 chr12 45213282 45213317 -76044213 + (T)n Simple_repeat Simple_repeat 1 35 0 2 929 978 74 89 0 chr12 45213317 45213452 -76044078 - B1_Mus1 SINE Alu 0 148 2 2 929 1787 147 69 0 chr12 45213863 45214169 -76043361 - ORR1A4 LTR MaLR 0 329 3 2 929 347 345 109 28 chr12 45214703 45214986 -76042544 + L2 LINE L2 1208 1513 -1906 2 929 322 302 165 72 chr12 45215120 45215594 -76041936 + L2 LINE L2 1881 2398 -1021 2 929 539 330 123 9 chr12 45215972 45216290 -76041240 + L2 LINE L2 2392 2745 -674 2 929 1905 208 81 42 chr12 45216312 45216830 -76040700 - RMER2 LTR ERV1 -29 538 1 2 929 286 265 152 10 chr12 45216985 45217084 -76040446 + PB1D7 SINE Alu 1 113 -7 2 929 289 288 14 14 chr12 45217327 45217401 -76040129 + PB1 SINE Alu 29 102 -25 2 929 283 247 181 11 chr12 45217563 45217657 -76039873 - PB1D7 SINE Alu -1 119 10 2 929 362 270 47 47 chr12 45217764 45217909 -76039621 + B1F SINE Alu 3 147 -2 2 929 278 319 21 0 chr12 45217998 45218092 -76039438 + PB1D10 SINE Alu 21 116 -1 2 929 616 213 123 41 chr12 45219407 45219578 -76037952 + B3 SINE B2 32 216 0 2 929 21 36 0 0 chr12 45219698 45219726 -76037804 + AT_rich Low_complexity Low_complexity 1 28 0 2 930 5368 60 7 1 chr12 45220176 45220861 -76036669 + L1_Mus3 LINE L1 5944 6632 -6 2 930 27799 119 12 6 chr12 45220893 45226269 -76031261 + L1Md_F2 LINE L1 177 5585 -298 2 930 6997 74 47 3 chr12 45226270 45227222 -76030308 + L1Md_F2 LINE L1 5587 6580 -2 2 930 3127 72 2 2 chr12 45227225 45227645 -76029885 + L1_Mus1 LINE L1 5998 6417 -150 2 930 9205 46 3 2 chr12 45227643 45229079 -76028451 - L1Md_F2 LINE L1 -465 6117 4682 2 930 3246 59 0 21 chr12 45229079 45229513 -76028017 + L1Md_F2 LINE L1 6158 6582 0 2 930 1204 73 0 6 chr12 45229514 45229680 -76027850 + L1_Mus1 LINE L1 6403 6567 0 2 930 381 248 48 29 chr12 45229896 45230000 -76027530 + B1_Mur1 SINE Alu 34 139 -10 2 930 271 0 0 49 chr12 45230318 45230359 -76027171 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 930 573 305 69 23 chr12 45232846 45233119 -76024411 - L1M2 LINE L1 -970 4910 4626 2 930 252 0 0 0 chr12 45233119 45233147 -76024383 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 930 573 304 68 20 chr12 45233147 45233267 -76024263 - L1M2 LINE L1 -1488 4655 4533 2 930 469 287 0 65 chr12 45233436 45233574 -76023956 + B1F2 SINE Alu 15 143 -6 2 930 256 247 0 0 chr12 45233581 45233654 -76023876 + L1MA6 LINE L1 6199 6271 -29 2 930 567 266 77 28 chr12 45233662 45233844 -76023686 + B3A SINE B2 1 191 -7 2 930 374 338 69 35 chr12 45233866 45234010 -76023520 + RSINE1 SINE B4 9 157 -8 2 930 204 40 0 0 chr12 45234013 45234038 -76023492 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 930 21 36 0 0 chr12 45234063 45234091 -76023439 + AT_rich Low_complexity Low_complexity 1 28 0 2 930 244 139 0 0 chr12 45234194 45234230 -76023300 + L1M2c LINE L1 628 663 -6126 2 930 1107 70 6 0 chr12 45234326 45234483 -76023047 + L1_Mus2 LINE L1 6407 6564 -2 2 930 307 301 52 31 chr12 45234510 45234606 -76022924 + B1F1 SINE Alu 1 98 -51 2 930 444 250 0 0 chr12 45234884 45234972 -76022558 - B3A SINE B2 -109 89 2 2 930 221 138 338 44 chr12 45235049 45235117 -76022413 - B1_Mur1 SINE Alu -1 148 61 2 930 304 300 47 16 chr12 45235568 45235696 -76021834 - B1F2 SINE Alu -16 133 4 2 930 350 226 98 52 chr12 45235961 45236134 -76021396 + L1M5 LINE L1 5554 5734 -390 2 930 943 284 115 30 chr12 45236878 45237216 -76020314 + MTD LTR MaLR 53 419 0 3 930 366 23 0 0 chr12 45238497 45238540 -76018990 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 930 252 0 0 0 chr12 45238540 45238567 -76018963 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 930 21 36 0 0 chr12 45239049 45239077 -76018453 + AT_rich Low_complexity Low_complexity 1 28 0 3 930 339 310 56 72 chr12 45239077 45239383 -76018147 - Lx8 LINE L1 -17 7456 7156 3 930 344 261 130 0 chr12 45239430 45239545 -76017985 - MTEa LTR MaLR -244 135 6 3 930 719 350 41 55 chr12 45240508 45240853 -76016677 - ORR1E LTR MaLR -19 340 1 3 930 578 189 148 16 chr12 45240870 45241053 -76016477 + L1MC1 LINE L1 6127 6333 0 3 930 268 274 93 36 chr12 45241132 45241272 -76016258 + MIRb SINE MIR 101 248 -20 3 930 563 332 93 61 chr12 45241441 45241752 -76015778 - MT2A LTR ERVL -212 321 1 3 930 424 242 20 10 chr12 45242096 45242196 -76015334 - B3 SINE B2 -111 105 5 3 930 311 282 184 27 chr12 45242218 45242517 -76015013 - L1M3e LINE L1 -3935 3173 2828 3 930 360 0 0 0 chr12 45242667 45242707 -76014823 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 930 811 256 74 24 chr12 45242718 45243232 -76014298 + L1M2 LINE L1 4932 5479 -821 3 930 254 167 0 0 chr12 45243271 45243314 -76014216 + B1F SINE Alu 70 144 -5 3 930 1523 275 13 11 chr12 45243325 45243703 -76013827 + MTE2b LTR MaLR 1 379 0 3 930 412 307 59 0 chr12 45244168 45244321 -76013209 - L1M3e LINE L1 -6793 237 76 3 930 4015 92 30 0 chr12 45244380 45244945 -76012585 + MT2B2 LTR ERVL 1 582 -2 3 930 932 261 39 43 chr12 45245469 45245771 -76011759 + Lx6 LINE L1 6009 6334 -716 3 930 1255 277 154 7 chr12 45245776 45246311 -76011219 + Lx6 LINE L1 6470 7434 -26 3 930 380 291 17 43 chr12 45246646 45246761 -76010769 + MIRb SINE MIR 36 147 -121 3 930 1179 249 42 61 chr12 45248568 45248945 -76008585 - ORR1D1 LTR MaLR -2 372 3 3 930 189 0 0 0 chr12 45249549 45249570 -76007960 + (CATG)n Simple_repeat Simple_repeat 2 22 0 3 930 406 281 166 22 chr12 45249575 45249855 -76007675 - LTR81B LTR ERV1? -21 1372 1033 3 930 352 164 219 0 chr12 45250324 45250397 -76007133 - 5S rRNA rRNA -31 90 2 3 930 2620 98 27 34 chr12 45252662 45253076 -76004454 - IAPLTR2a LTR ERVK 0 411 1 3 930 24939 13 3 12 chr12 45253076 45256062 -76001468 - IAPEz-int LTR ERVK 0 6481 3525 3 930 873 67 25 0 chr12 45256062 45256182 -76001348 - IAPEz-int LTR ERVK -2770 4910 4788 3 930 1767 92 12 0 chr12 45256183 45256433 -76001097 - IAPEz-int LTR ERVK -5184 2496 2244 3 930 921 59 0 0 chr12 45256428 45256547 -76000983 - IAPEz-int LTR ERVK -5004 1477 1359 3 930 4855 51 3 37 chr12 45256547 45257224 -76000306 - IAPEz-int LTR ERVK -5819 662 9 3 930 2630 95 27 34 chr12 45257225 45257639 -75999891 - IAPLTR2a LTR ERVK 0 411 1 3 930 1598 42 0 0 chr12 45258944 45259134 -75998396 - B2_Mm1t SINE B2 -2 191 2 3 930 505 288 32 26 chr12 45260743 45260932 -75996598 + MIR SINE MIR 39 228 -34 3 930 419 261 26 0 chr12 45261063 45261178 -75996352 + MTEb LTR MaLR 260 377 -2 3 930 4075 38 0 0 chr12 45261883 45262362 -75995168 + L1Md_T LINE L1 6101 6579 -3 3 930 604 255 39 72 chr12 45262558 45262698 -75994832 + Lx8 LINE L1 7202 7343 -130 3 930 1183 75 0 0 chr12 45262698 45262845 -75994685 + B1_Mus1 SINE Alu 1 147 -1 3 930 604 255 39 72 chr12 45262845 45262983 -75994547 + Lx8 LINE L1 7344 7471 -2 3 930 237 374 24 8 chr12 45263102 45263226 -75994304 + MARNA DNA Mariner 398 523 -63 3 930 306 204 0 0 chr12 45263263 45263312 -75994218 - HAL1-3A_ME LINE L1 -835 2023 1975 3 930 224 250 0 20 chr12 45264858 45264907 -75992623 + ID4_ SINE ID 5 52 -31 3 930 180 0 0 0 chr12 45266130 45266150 -75991380 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 3 930 653 285 169 21 chr12 45266397 45266759 -75990771 + MLT2B4 LTR ERVL 1 414 0 3 930 804 74 0 0 chr12 45267121 45267229 -75990301 + (GAAA)n Simple_repeat Simple_repeat 4 111 0 3 930 446 325 29 12 chr12 45267348 45267519 -75990011 + MER5A DNA MER1_type 2 175 -14 3 930 288 309 15 89 chr12 45269149 45269284 -75988246 + L2c LINE L2 3263 3387 0 3 930 1162 259 49 63 chr12 45270176 45270310 -75987220 - Lx8 LINE L1 -5 7468 7345 3 930 702 333 5 0 chr12 45270310 45270520 -75987010 - B3 SINE B2 -5 211 1 3 930 1162 259 49 63 chr12 45270520 45270813 -75986717 - Lx8 LINE L1 -129 7344 7047 3 930 340 339 128 1 chr12 45271313 45271501 -75986029 + MIR SINE MIR 45 256 -12 3 930 204 283 0 0 chr12 45272045 45272098 -75985432 + CT-rich Low_complexity Low_complexity 6 58 0 3 930 249 231 32 166 chr12 45274043 45274230 -75983300 + RMER10A LTR ERVL 257 418 -24 3 930 979 234 5 9 chr12 45274300 45274511 -75983019 - B3 SINE B2 -6 210 1 3 930 391 348 105 21 chr12 45274838 45275029 -75982501 - LTR82B Low_complexity ERVL -11 819 613 3 930 1367 80 32 0 chr12 45275228 45275416 -75982114 - B2_Mm2 SINE B2 -1 194 1 3 930 21 0 0 0 chr12 45275789 45275810 -75981720 + AT_rich Low_complexity Low_complexity 1 21 0 3 930 1218 196 135 28 chr12 45276366 45276729 -75980801 - RLTR9D LTR ERVK -1 402 1 3 930 486 0 0 0 chr12 45277702 45277756 -75979774 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 930 351 0 0 0 chr12 45279059 45279098 -75978432 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 930 1009 102 0 0 chr12 45281104 45281241 -75976289 + B1_Mus1 SINE Alu 12 148 0 3 930 337 318 27 9 chr12 45281285 45281396 -75976134 - RSINE1 SINE B4 -50 115 3 3 930 394 266 13 0 chr12 45281606 45281707 -75975823 - PB1D10 SINE Alu -32 117 11 3 930 224 321 47 23 chr12 45281632 45281718 -75975812 - B4A SINE B4 -120 172 85 3 930 189 119 143 0 chr12 45282019 45282061 -75975469 + MIRc SINE MIR 163 210 -58 3 930 651 300 55 13 chr12 45283716 45283952 -75973578 + B4A SINE B4 1 246 -46 3 930 242 374 0 0 chr12 45284336 45284419 -75973111 + BC1_Mm scRNA scRNA 4 86 -66 3 930 438 278 122 41 chr12 45284517 45284786 -75972744 - RMER20B LTR ERVK -54 462 172 3 930 244 200 33 16 chr12 45285170 45285231 -75972299 - MLT1D LTR MaLR -6 499 438 3 930 614 295 60 7 chr12 45285324 45285474 -75972056 - RSINE1 SINE B4 0 165 8 3 930 1011 248 24 0 chr12 45285492 45285702 -75971828 - B3 SINE B2 0 216 2 3 930 344 287 96 0 chr12 45285717 45285811 -75971719 - PB1D10 SINE Alu -9 108 6 3 930 954 291 113 38 chr12 45286443 45286886 -75970644 + MT2A LTR ERVL 1 481 -52 3 930 2153 155 33 11 chr12 45286886 45287245 -75970285 + ORR1B2 LTR MaLR 1 367 0 3 930 954 291 113 38 chr12 45287245 45287297 -75970233 + MT2A LTR ERVL 482 533 0 3 930 203 258 66 22 chr12 45287644 45287735 -75969795 - L2c LINE L2 0 3387 3293 3 930 1162 305 52 26 chr12 45287863 45288290 -75969240 + Lx8 LINE L1 6308 6745 -728 3 930 2012 161 23 17 chr12 45288308 45288661 -75968869 + ORR1B1 LTR MaLR 40 394 0 3 930 779 247 12 0 chr12 45288661 45288823 -75968707 - RLTR18B LTR ERVK -6 506 343 3 930 1852 143 85 6 chr12 45288830 45289147 -75968383 - ORR1B1 LTR MaLR 0 394 53 3 930 495 259 100 149 chr12 45289173 45289422 -75968108 - RLTR18B LTR ERVK -165 347 111 3 930 716 242 7 13 chr12 45289525 45289676 -75967854 - RLTR18B LTR ERVK -354 158 9 3 930 935 333 71 29 chr12 45289690 45290169 -75967361 + Lx8 LINE L1 6756 7254 -219 3 930 185 353 188 52 chr12 45290340 45291637 -75965893 - L2c LINE L2 -341 3078 1605 3 930 241 312 36 18 chr12 45292287 45292398 -75965132 - MER103 DNA DNA -2 164 52 3 930 22 0 0 0 chr12 45292902 45292924 -75964606 + AT_rich Low_complexity Low_complexity 1 22 0 3 930 255 265 57 57 chr12 45292977 45292989 -75964541 - B4 SINE B4 -203 89 2 3 930 373 250 0 0 chr12 45292989 45293065 -75964465 - B3A SINE B2 -121 77 2 3 930 204 67 0 0 chr12 45293098 45293128 -75964402 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 3 930 240 64 8 107 chr12 45293141 45293263 -75964267 + T-rich Low_complexity Low_complexity 3 112 0 3 930 852 102 17 8 chr12 45293508 45293627 -75963903 + PB1D9 SINE Alu 1 120 0 3 930 440 158 0 10 chr12 45293628 45293664 -75963866 + polypurine Low_complexity Low_complexity 2 37 0 3 930 1065 58 66 0 chr12 45293664 45293801 -75963729 + B1_Mm SINE Alu 2 147 0 3 930 440 158 0 10 chr12 45293801 45293860 -75963670 + polypurine Low_complexity Low_complexity 38 96 0 3 930 1920 164 37 73 chr12 45293911 45294292 -75963238 - ORR1B2 LTR MaLR 0 367 1 3 930 24 0 0 0 chr12 45294421 45294445 -75963085 + AT_rich Low_complexity Low_complexity 1 24 0 3 930 270 0 0 0 chr12 45295003 45295033 -75962497 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 930 38 0 0 0 chr12 45295782 45295820 -75961710 + AT_rich Low_complexity Low_complexity 1 38 0 3 930 247 233 98 91 chr12 45295829 45295961 -75961569 + MLT1J LTR MaLR 379 511 -1 3 930 298 272 12 12 chr12 45296407 45296438 -75961092 + polypurine Low_complexity Low_complexity 3 33 0 3 930 1834 158 111 12 chr12 45296438 45296772 -75960758 - ORR1B2 LTR MaLR 0 367 1 3 930 298 272 12 12 chr12 45296772 45296822 -75960708 + polypurine Low_complexity Low_complexity 34 83 0 3 930 1099 78 7 2 chr12 45296858 45297006 -75960524 + B1_Mus1 SINE Alu 2 143 -5 3 930 459 0 0 0 chr12 45297034 45297085 -75960445 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 3 930 21 0 0 0 chr12 45297260 45297281 -75960249 + AT_rich Low_complexity Low_complexity 1 21 0 3 930 290 333 0 0 chr12 45297350 45297428 -75960102 - ID4 SINE ID 0 83 6 3 930 3265 184 131 23 chr12 45297468 45298085 -75959445 + RMER12 LTR ERVK 105 732 -590 3 930 384 22 0 0 chr12 45298085 45298130 -75959400 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 930 3265 211 160 28 chr12 45298130 45298618 -75958912 + RMER12 LTR ERVK 733 1135 -187 3 930 1212 139 97 24 chr12 45298623 45298830 -75958700 - URR1A DNA MER1_type -4 222 1 3 930 908 254 38 84 chr12 45299381 45299856 -75957674 - MT2A LTR ERVL -71 462 4 3 930 479 319 47 0 chr12 45299919 45300088 -75957442 - MLT1A0 LTR MaLR 0 365 189 3 930 235 274 0 16 chr12 45300825 45300888 -75956642 + CT-rich Low_complexity Low_complexity 4 65 0 3 930 240 59 0 0 chr12 45300931 45300965 -75956565 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 930 988 17 0 0 chr12 45300969 45301087 -75956443 - B1_Mm SINE Alu -7 140 23 3 930 3172 59 28 3 chr12 45301092 45301482 -75956048 + MTB LTR MaLR 1 400 0 4 930 243 233 0 16 chr12 45301490 45301551 -75955979 - MLT1A0 LTR MaLR -290 75 16 3 930 746 93 246 0 chr12 45301628 45301746 -75955784 - B1_Mus1 SINE Alu -1 147 1 4 930 439 201 139 6 chr12 45301935 45302100 -75955430 + Lx9 LINE L1 7458 7644 0 4 930 1310 13 0 0 chr12 45302547 45302698 -75954832 + B2_Mm1a SINE B2 2 152 -41 4 930 554 41 14 0 chr12 45302700 45302773 -75954757 + (GAAAA)n Simple_repeat Simple_repeat 2 75 0 4 930 4608 80 3 5 chr12 45302793 45303398 -75954132 + L1_Mus4 LINE L1 5828 6431 -205 4 930 488 193 43 52 chr12 45304210 45304325 -75953205 + Lx9 LINE L1 6934 7047 -597 4 930 381 117 0 0 chr12 45304364 45304424 -75953106 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 930 551 234 96 13 chr12 45304483 45304639 -75952891 + URR1A DNA MER1_type 5 173 -53 4 930 258 262 143 19 chr12 45304818 45304923 -75952607 - L1_Mur3 LINE L1 -3464 2416 2299 4 930 386 288 75 75 chr12 45304928 45305048 -75952482 + RSINE1 SINE B4 36 155 -10 4 930 291 379 0 19 chr12 45305231 45305336 -75952194 - PB1D10 SINE Alu -10 107 5 4 930 786 121 210 12 chr12 45305494 45305508 -75952022 - Lx LINE L1 -4 6650 6638 4 930 3260 69 40 12 chr12 45305508 45305934 -75951596 - L1_Mus4 LINE L1 -6 6630 6193 4 930 786 121 210 12 chr12 45305934 45306086 -75951444 - Lx LINE L1 -17 6637 6451 4 930 27 0 0 0 chr12 45306102 45306129 -75951401 + AT_rich Low_complexity Low_complexity 1 27 0 4 930 198 0 0 0 chr12 45306236 45306258 -75951272 + (A)n Simple_repeat Simple_repeat 1 22 0 4 930 333 292 168 41 chr12 45306266 45306462 -75951068 + B4A SINE B4 1 221 -71 4 930 762 168 72 14 chr12 45310283 45310422 -75947108 + B1_Mur2 SINE Alu 1 147 -2 4 930 524 118 0 23 chr12 45311833 45311920 -75945610 - B2_Mm2 SINE B2 -101 94 10 4 930 210 394 67 0 chr12 45312129 45312233 -75945297 + MIR SINE MIR 27 137 -125 4 930 437 268 0 18 chr12 45312451 45312565 -75944965 + PB1D10 SINE Alu 5 116 -1 4 930 1734 105 111 37 chr12 45312614 45312911 -75944619 + ORR1A2 LTR MaLR 1 319 -8 4 930 4875 185 12 85 chr12 45312915 45314103 -75943427 + ORR1A2-int LTR MaLR 1 1101 -862 4 930 1131 73 0 0 chr12 45314103 45314239 -75943291 + B1_Mus1 SINE Alu 1 136 -12 4 930 197 33 33 0 chr12 45314242 45314272 -75943258 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 930 2007 189 53 25 chr12 45314341 45314737 -75942793 - MTB_Mm LTR MaLR 0 407 1 4 930 5510 160 165 32 chr12 45314737 45315847 -75941683 - MTB_Mm-int LTR MaLR 0 1258 2 4 930 2258 170 28 12 chr12 45315847 45316246 -75941284 - MTB_Mm LTR MaLR 0 407 2 4 930 277 254 17 0 chr12 45317405 45317464 -75940066 - ID_B1 SINE B4 -80 144 85 4 930 506 250 45 0 chr12 45317680 45317792 -75939738 + PB1D10 SINE Alu 1 117 0 4 930 351 65 0 0 chr12 45318209 45318255 -75939275 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 4 930 1024 142 7 12 chr12 45318255 45318446 -75939084 + MT2C_Mm LTR ERVL 303 493 0 4 930 243 0 0 0 chr12 45318600 45318627 -75938903 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 930 1138 74 0 0 chr12 45318627 45318762 -75938768 - B1_Mus2 SINE Alu -11 136 2 4 930 404 283 50 0 chr12 45318796 45318925 -75938605 + MLT1G1 LTR MaLR 38 178 -371 4 930 231 333 69 0 chr12 45318976 45319078 -75938452 - RLTR13C1 LTR ERVK 0 983 875 4 930 385 216 0 17 chr12 45319078 45319187 -75938343 + L1VL2 LINE L1 179 276 -6142 4 930 5760 112 33 14 chr12 45319173 45320620 -75936910 + L1Md_F LINE L1 511 1945 -1872 4 930 4137 54 10 36 chr12 45320620 45321141 -75936389 + L1_Mus2 LINE L1 6058 6564 -2 4 930 21 0 0 0 chr12 45321145 45321166 -75936364 + AT_rich Low_complexity Low_complexity 1 21 0 4 930 315 0 0 0 chr12 45321314 45321349 -75936181 + (T)n Simple_repeat Simple_repeat 1 35 0 4 930 1246 68 0 0 chr12 45321349 45321496 -75936034 - B1_Mm SINE Alu 0 147 1 4 930 253 214 0 0 chr12 45321650 45321692 -75935838 - B2_Mm2 SINE B2 -153 42 1 4 930 4031 41 30 0 chr12 45322060 45322521 -75935009 + MT2C_Mm LTR ERVL 1 475 0 4 930 21 71 0 0 chr12 45322818 45322860 -75934670 + GC_rich Low_complexity Low_complexity 1 42 0 4 930 219 69 0 0 chr12 45324184 45324213 -75933317 + (CCCCCA)n Simple_repeat Simple_repeat 5 33 0 4 930 211 195 0 0 chr12 45324283 45324324 -75933206 + C-rich Low_complexity Low_complexity 5 45 0 4 930 759 229 53 0 chr12 45326559 45326690 -75930840 + B1_Mur1 SINE Alu 3 140 -9 4 930 207 0 0 0 chr12 45327011 45327034 -75930496 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 930 23 33 0 0 chr12 45327525 45327555 -75929975 + AT_rich Low_complexity Low_complexity 1 30 0 4 930 1124 80 13 0 chr12 45327663 45327813 -75929717 - L1_Mus2 LINE L1 -1 6565 6414 4 930 453 272 33 107 chr12 45328157 45328300 -75929230 + B4 SINE B4 46 190 -102 4 930 262 286 14 0 chr12 45328767 45328837 -75928693 + MLT1B LTR MaLR 315 385 -5 4 930 1590 182 39 128 chr12 45329376 45329711 -75927819 + MTC LTR MaLR 59 366 -55 4 930 3301 14 0 0 chr12 45329711 45330057 -75927473 + ORR1A0 LTR MaLR 1 346 0 4 930 1590 182 39 128 chr12 45330057 45330111 -75927419 + MTC LTR MaLR 367 413 -8 4 930 2617 54 18 6 chr12 45330165 45330498 -75927032 - IAPEY_LTR LTR ERVK 0 385 49 4 930 204 40 0 0 chr12 45330824 45330849 -75926681 + (T)n Simple_repeat Simple_repeat 1 25 0 4 930 1257 68 0 0 chr12 45330855 45331002 -75926528 - B1_Mus1 SINE Alu 0 148 2 4 930 4554 131 17 32 chr12 45331356 45331687 -75925843 - L1_Mm LINE L1 -1251 4632 4302 4 930 1239 29 0 0 chr12 45331687 45331823 -75925707 + B1_Mm SINE Alu 2 137 -10 4 930 240 35 0 0 chr12 45331823 45331852 -75925678 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 930 4554 131 17 32 chr12 45331852 45332299 -75925231 - L1_Mm LINE L1 -1582 4301 3866 4 930 39466 5 0 0 chr12 45332302 45337888 -75919642 + L1Md_A LINE L1 1 5586 -297 4 930 9658 1 0 0 chr12 45337888 45338884 -75918646 + L1Md_A LINE L1 5587 6582 0 4 930 3347 136 104 24 chr12 45338886 45339519 -75918011 - L1_Mur1 LINE L1 -2007 3879 3196 4 930 6698 146 38 2 chr12 45339519 45340947 -75916583 + Lx2 LINE L1 4652 6146 -851 4 930 474 254 81 99 chr12 45342004 45342227 -75915303 - RMER2 LTR ERV1 -19 548 330 4 930 404 77 0 0 chr12 45342488 45342540 -75914990 - B2_Mm2 SINE B2 -104 91 40 4 930 578 71 12 0 chr12 45342552 45342636 -75914894 + (TTCC)n Simple_repeat Simple_repeat 2 86 0 4 930 504 0 0 0 chr12 45342636 45342692 -75914838 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 930 496 246 55 16 chr12 45342694 45342822 -75914708 - B1F2 SINE Alu -16 133 1 4 930 1019 267 39 35 chr12 45342857 45343177 -75914353 + ORR1E LTR MaLR 1 339 -40 4 930 384 270 72 7 chr12 45343171 45343309 -75914221 - B1_Mus2 SINE Alu 0 147 1 4 930 296 247 34 80 chr12 45343230 45343318 -75914212 - MT2B2 LTR ERVL -346 238 155 4 930 4137 178 137 14 chr12 45343689 45344492 -75913038 + RMER19B LTR ERVK 1 902 0 4 930 252 295 0 49 chr12 45344531 45344613 -75912917 - B4A SINE B4 -140 152 75 4 930 211 200 0 0 chr12 45344627 45344667 -75912863 - B3A SINE B2 -158 40 1 4 930 524 303 57 42 chr12 45344684 45344863 -75912667 - B3A SINE B2 -2 196 13 4 930 698 87 0 10 chr12 45344863 45344967 -75912563 + (TCTCC)n Simple_repeat Simple_repeat 4 106 0 4 930 524 303 57 42 chr12 45344967 45344980 -75912550 - B3A SINE B2 -186 12 1 4 930 249 156 188 0 chr12 45345037 45345101 -75912429 - L1M5 LINE L1 -2759 3387 3312 4 930 549 0 0 0 chr12 45345781 45345842 -75911688 + (CATAC)n Simple_repeat Simple_repeat 1 61 0 4 930 703 304 73 30 chr12 45346039 45346339 -75911191 + MTE2b LTR MaLR 1 289 -90 4 930 1192 263 61 17 chr12 45346349 45346694 -75910836 - MTE2a LTR MaLR 0 379 20 4 930 245 250 11 81 chr12 45346727 45346814 -75910716 + MTE2b LTR MaLR 286 366 -4 4 930 4346 263 95 55 chr12 45346818 45347409 -75910121 + MTE2b-int LTR MaLR 1 583 -997 4 930 1097 83 21 0 chr12 45347409 45347554 -75909976 + B1_Mus1 SINE Alu 1 148 0 4 930 4346 263 95 55 chr12 45347554 45348480 -75909050 + MTE2b-int LTR MaLR 584 1579 -1 4 930 990 301 68 97 chr12 45348483 45348866 -75908664 + MTE2b LTR MaLR 3 374 -5 4 930 609 291 41 11 chr12 45348869 45349137 -75908393 + L1M2 LINE L1 2862 3137 -3006 4 930 375 220 68 76 chr12 45349137 45349255 -75908275 - RLTR23 LTR ERV1 0 430 314 4 930 262 169 7 179 chr12 45350054 45350161 -75907369 + L1_Mur3 LINE L1 3097 3180 -2700 4 930 1281 54 0 0 chr12 45350161 45350308 -75907222 + B1_Mus1 SINE Alu 2 148 0 4 930 262 169 7 179 chr12 45350308 45350351 -75907179 + L1_Mur3 LINE L1 3181 3221 -2659 4 930 241 262 16 0 chr12 45350353 45350414 -75907116 - B3 SINE B2 -154 62 1 4 930 774 187 45 0 chr12 45350445 45350579 -75906951 - B1_Mur3 SINE Alu -9 140 1 4 930 274 205 25 13 chr12 45350780 45350859 -75906671 + L1MC4a LINE L1 7225 7304 -578 4 931 397 272 90 58 chr12 45351576 45351732 -75905798 + B3 SINE B2 53 213 -3 4 931 21 0 0 0 chr12 45352186 45352207 -75905323 + AT_rich Low_complexity Low_complexity 1 21 0 4 931 1081 197 12 8 chr12 45352303 45352543 -75904987 - RLTR28 LTR ERVL 0 524 284 4 931 2682 233 126 23 chr12 45352642 45353416 -75904114 + Tigger1 DNA MER2_type 1357 2221 -197 4 931 766 218 0 33 chr12 45353416 45353568 -75903962 - B1_Mur1 SINE Alu -1 148 2 4 931 2682 233 126 23 chr12 45353568 45353592 -75903938 + Tigger1 DNA MER2_type 2222 2238 -180 4 931 3531 58 20 146 chr12 45353592 45354135 -75903395 + MT2C_Mm LTR ERVL 1 475 0 4 931 2682 233 126 23 chr12 45354135 45354209 -75903321 + Tigger1 DNA MER2_type 2239 2320 -98 4 931 290 292 18 62 chr12 45354230 45354343 -75903187 - MIRb SINE MIR -48 220 113 4 931 1992 214 27 81 chr12 45354383 45355145 -75902385 + RMER1B Other Other 41 644 -422 4 931 570 291 17 165 chr12 45355812 45356198 -75901332 - MLT1E2 LTR MaLR -6 621 312 4 931 248 313 93 43 chr12 45356233 45356373 -75901157 + RMER5 LTR ERV1 17 163 -371 4 931 228 67 0 0 chr12 45356459 45356489 -75901041 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 4 931 39751 38 1 14 chr12 45356781 45362932 -75894598 - L1Md_A LINE L1 0 6582 511 4 931 2118 229 40 13 chr12 45362952 45363421 -75894109 - Lx5 LINE L1 -9 7041 6560 4 931 5026 196 73 23 chr12 45363422 45365080 -75892450 - Lx5 LINE L1 -631 6419 4660 4 931 2073 145 73 13 chr12 45365077 45365462 -75892068 + L1_Mur2 LINE L1 4171 4578 -1299 4 931 1004 263 60 17 chr12 45365505 45365807 -75891723 + RMER5 LTR ERV1 220 534 0 4 931 1379 102 11 0 chr12 45365847 45366034 -75891496 - B2_Mm2 SINE B2 -5 190 2 5 931 430 260 15 82 chr12 45366582 45366669 -75890861 - MLT1E2 LTR MaLR -502 125 40 5 931 700 242 77 195 chr12 45366669 45367100 -75890430 + RLTR14 LTR ERV1 1 380 -2 5 931 430 260 15 82 chr12 45367100 45367146 -75890384 - MLT1E2 LTR MaLR -588 39 1 5 931 23 0 0 0 chr12 45367290 45367313 -75890217 + AT_rich Low_complexity Low_complexity 1 23 0 5 931 2704 36 0 0 chr12 45367313 45367615 -75889915 - L1Md_T LINE L1 -2 6580 6279 5 931 596 303 157 31 chr12 45368731 45369082 -75888448 + MER31B LTR ERV1 14 408 -58 5 931 27 29 0 0 chr12 45369089 45369123 -75888407 + AT_rich Low_complexity Low_complexity 1 34 0 5 931 577 289 33 87 chr12 45372022 45372240 -75885290 - B3A SINE B2 -1 215 9 5 931 408 39 0 0 chr12 45372568 45372613 -75884917 + (T)n Simple_repeat Simple_repeat 1 45 0 5 931 1372 7 0 0 chr12 45372613 45372759 -75884771 - B1_Mm SINE Alu 0 147 2 5 931 408 39 0 0 chr12 45372759 45372765 -75884765 + (T)n Simple_repeat Simple_repeat 1 6 0 5 931 239 317 47 58 chr12 45372836 45372873 -75884657 - B2_Mm2 SINE B2 0 195 11 5 931 772 247 20 0 chr12 45372873 45373023 -75884507 - RSINE1 SINE B4 0 165 13 5 931 336 48 0 0 chr12 45373027 45373069 -75884461 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 931 633 170 14 49 chr12 45373077 45373219 -75884311 - Lx4B LINE L1 -5 7053 6917 5 931 2528 41 0 3 chr12 45373427 45373719 -75883811 - L1_Mus1 LINE L1 0 6567 6277 5 931 189 0 0 0 chr12 45373952 45373973 -75883557 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 931 231 61 0 0 chr12 45373973 45374006 -75883524 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 931 351 60 0 0 chr12 45374009 45374059 -75883471 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 931 286 283 118 11 chr12 45374088 45374181 -75883349 - RSINE1 SINE B4 -59 106 4 5 931 1206 89 0 0 chr12 45374670 45374816 -75882714 - B1_Mus1 SINE Alu -1 147 2 5 931 183 42 0 0 chr12 45375028 45375052 -75882478 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 931 1157 82 7 0 chr12 45375057 45375203 -75882327 - B1_Mus1 SINE Alu 0 148 2 5 931 328 247 0 69 chr12 45375497 45375584 -75881946 - ID SINE ID -142 82 2 5 931 228 128 0 0 chr12 45375899 45375916 -75881614 + (TG)n Simple_repeat Simple_repeat 1 17 0 5 931 2685 82 95 5 chr12 45375916 45376283 -75881247 - MTB LTR MaLR 0 400 1 5 931 228 128 0 0 chr12 45376283 45376304 -75881226 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 931 1173 36 29 0 chr12 45376384 45376522 -75881008 - B1_Mm SINE Alu -1 146 5 5 931 552 235 61 95 chr12 45376529 45376619 -75880911 - L1MCa LINE L1 -4294 2214 2134 5 931 640 216 157 0 chr12 45376619 45376753 -75880777 - RSINE1 SINE B4 -8 157 3 5 931 552 235 61 95 chr12 45376753 45376925 -75880605 - L1MCa LINE L1 -4375 2133 1962 5 931 252 0 0 0 chr12 45377020 45377048 -75880482 + (CCA)n Simple_repeat Simple_repeat 2 29 0 5 931 470 278 77 21 chr12 45377076 45377365 -75880165 - L1MA4 LINE L1 -279 6018 5710 5 931 924 151 238 0 chr12 45377540 45377712 -75879818 - B3 SINE B2 -3 213 1 5 931 519 324 27 0 chr12 45377761 45377909 -75879621 - RSINE1 SINE B4 -6 159 8 5 931 1150 256 124 19 chr12 45377916 45378215 -75879315 - L1M2 LINE L1 -983 4897 4549 5 931 324 0 0 0 chr12 45378215 45378251 -75879279 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 931 1150 240 118 19 chr12 45378251 45378497 -75879033 - L1M2 LINE L1 -1564 4579 4316 5 931 328 228 0 0 chr12 45378644 45378701 -75878829 + tRNA-Ala-GCY_ tRNA tRNA 11 67 -8 5 931 1936 280 60 108 chr12 45378770 45380229 -75877301 - L1M2 LINE L1 -1818 4325 2936 5 931 664 205 33 0 chr12 45380283 45380405 -75877125 - B3 SINE B2 -90 126 1 5 931 566 90 11 0 chr12 45380405 45380493 -75877037 - URR1B DNA MER1_type -69 156 68 5 931 811 313 9 0 chr12 45380519 45380730 -75876800 - ID_B1 SINE B4 -7 217 5 5 931 183 80 0 0 chr12 45380743 45380768 -75876762 + (TTA)n Simple_repeat Simple_repeat 1 25 0 5 931 369 0 0 0 chr12 45380924 45380965 -75876565 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 931 3027 101 84 9 chr12 45381065 45381494 -75876036 + Lx3_Mus LINE L1 6545 7005 -4 5 931 41 36 0 0 chr12 45381494 45381549 -75875981 + AT_rich Low_complexity Low_complexity 1 55 0 5 931 339 268 181 31 chr12 45381664 45381891 -75875639 - Lx8 LINE L1 -385 7088 6828 5 931 484 273 66 0 chr12 45382272 45382393 -75875137 - B1F1 SINE Alu -18 131 3 5 931 513 274 208 8 chr12 45382575 45382811 -75874719 - B4A SINE B4 -7 285 3 5 931 642 215 241 18 chr12 45383285 45383451 -75874079 - B3 SINE B2 -10 206 4 5 931 317 263 232 0 chr12 45385249 45385344 -75872186 + PB1D10 SINE Alu 1 117 0 5 931 183 244 0 22 chr12 45385662 45385708 -75871822 - MIRc SINE MIR -175 93 49 5 931 424 339 66 23 chr12 45386152 45386502 -75871028 - MLT1A0 LTR MaLR 0 365 1 5 931 195 229 62 0 chr12 45386587 45386635 -75870895 - L3 LINE CR1 -3518 971 921 5 931 338 291 125 18 chr12 45386678 45386846 -75870684 - L1ME3A LINE L1 -279 5894 5709 5 931 361 326 37 22 chr12 45387121 45387256 -75870274 - B1F1 SINE Alu -1 148 12 5 931 1242 48 0 27 chr12 45387455 45387605 -75869925 + B1_Mus2 SINE Alu 1 146 -1 5 931 606 313 18 94 chr12 45387694 45388078 -75869452 + Lx9 LINE L1 7108 7462 -182 5 931 480 77 0 0 chr12 45388080 45388145 -75869385 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 931 385 320 145 12 chr12 45388287 45388632 -75868898 - L1ME3A LINE L1 -1062 5084 4694 5 931 810 153 230 23 chr12 45388637 45388811 -75868719 - B3 SINE B2 -6 210 1 5 931 825 278 13 8 chr12 45388865 45389086 -75868444 - B3A SINE B2 0 216 1 5 931 186 43 0 0 chr12 45389453 45389476 -75868054 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 931 1409 56 11 0 chr12 45389476 45389654 -75867876 - B2_Mm1t SINE B2 -13 180 1 5 931 1712 267 70 0 chr12 45389655 45390153 -75867377 + Lx8 LINE L1 6366 6898 -575 5 931 517 231 9 9 chr12 45390621 45390730 -75866800 + PB1D9 SINE Alu 2 110 -10 5 931 229 310 32 75 chr12 45392165 45392259 -75865271 - MLT1H LTR MaLR -401 148 59 5 931 383 258 0 22 chr12 45392274 45392365 -75865165 + PB1D10 SINE Alu 1 89 -28 5 931 565 152 20 10 chr12 45392857 45392957 -75864573 + B1_Mur3 SINE Alu 31 131 -18 5 931 610 175 269 29 chr12 45393153 45393324 -75864206 + B3 SINE B2 1 212 -4 5 931 212 282 101 13 chr12 45393679 45393758 -75863772 - MIR SINE MIR -113 149 64 5 931 19237 19 0 0 chr12 45393758 45396281 -75861249 - L1Md_T LINE L1 -501 6081 3560 5 931 3732 62 2 4 chr12 45396281 45396766 -75860764 + L1Md_F2 LINE L1 6099 6582 0 5 931 607 238 17 81 chr12 45397405 45397431 -75860099 - RSINE1 SINE B4 0 165 145 5 931 1599 165 5 121 chr12 45397431 45397803 -75859727 - ORR1A4 LTR MaLR 0 329 1 5 931 607 238 17 81 chr12 45397803 45397950 -75859580 - RSINE1 SINE B4 -21 144 3 5 931 803 281 67 0 chr12 45397952 45398162 -75859368 - B4A SINE B4 -67 225 2 5 931 562 266 175 12 chr12 45398495 45398735 -75858795 - B4 SINE B4 -10 282 4 5 931 25 0 0 0 chr12 45399689 45399714 -75857816 + AT_rich Low_complexity Low_complexity 1 25 0 5 931 269 246 101 0 chr12 45399898 45399967 -75857563 - RSINE1 SINE B4 -78 87 12 5 931 276 231 77 0 chr12 45400047 45400125 -75857405 - MTD LTR MaLR 0 419 336 5 931 4569 81 22 2 chr12 45400865 45401496 -75856034 - Lx LINE L1 0 6654 6011 5 931 1376 67 39 0 chr12 45402297 45402475 -75855055 - B2_Mm2 SINE B2 -9 186 2 5 931 2235 220 18 30 chr12 45402742 45403234 -75854296 - Lx6 LINE L1 -1 7459 6974 5 931 640 181 45 8 chr12 45403696 45403830 -75853700 - Lx6 LINE L1 -484 6976 6838 5 931 5527 208 34 22 chr12 45403841 45404931 -75852599 - Lx6 LINE L1 -568 6892 5787 5 931 429 20 0 0 chr12 45404931 45404981 -75852549 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 931 5527 163 67 2 chr12 45404981 45405353 -75852177 - Lx6 LINE L1 -1674 5786 5396 5 931 395 326 15 8 chr12 45405662 45405792 -75851738 + B1F1 SINE Alu 1 131 -18 5 931 950 281 76 69 chr12 45406453 45406743 -75850787 - B4A SINE B4 0 292 1 5 931 3700 112 185 10 chr12 45407159 45407847 -75849683 - RMER17D2 LTR ERVK -1 808 1 5 931 1309 123 62 0 chr12 45408139 45408350 -75849180 - URR1B DNA MER1_type -1 224 1 5 931 493 247 0 0 chr12 45408526 45408611 -75848919 + RSINE1 SINE B4 2 86 -79 5 931 267 328 86 68 chr12 45409630 45409820 -75847710 + L2a LINE L2 2985 3189 -237 5 931 1206 82 60 5 chr12 45409820 45410004 -75847526 - B2_Mm2 SINE B2 0 195 2 5 931 267 328 86 68 chr12 45410004 45410137 -75847393 + L2a LINE L2 3190 3314 -112 5 931 315 233 27 14 chr12 45410145 45410219 -75847311 + ID4_ SINE ID 6 80 -3 5 931 262 281 50 50 chr12 45410219 45410246 -75847284 + ID_B1 SINE B4 6 106 -118 5 931 22 0 0 0 chr12 45410620 45410642 -75846888 + AT_rich Low_complexity Low_complexity 1 22 0 5 931 685 243 82 35 chr12 45410676 45410958 -75846572 - L1MA9 LINE L1 -212 6100 5806 5 931 568 264 57 12 chr12 45410991 45411236 -75846294 - L1MA9 LINE L1 -580 5732 5477 5 931 1227 40 0 20 chr12 45411321 45411472 -75846058 - B1_Mus1 SINE Alu 0 148 1 5 931 311 362 47 31 chr12 45411855 45412046 -75845484 + L1ME1 LINE L1 5986 6179 0 5 931 347 242 20 189 chr12 45414759 45414907 -75842623 + B1F1 SINE Alu 1 123 -26 5 931 231 163 59 39 chr12 45414877 45414928 -75842602 + PB1D7 SINE Alu 65 116 -4 5 931 541 238 76 8 chr12 45414927 45415058 -75842472 + RSINE1 SINE B4 18 157 -8 5 931 300 312 72 59 chr12 45416213 45416366 -75841164 + RSINE1 SINE B4 3 157 -8 5 931 578 301 7 14 chr12 45416377 45416522 -75841008 + ID_B1 SINE B4 81 224 0 5 931 1018 295 92 9 chr12 45416618 45416964 -75840566 + MTE2b LTR MaLR 1 370 0 6 931 1137 83 7 0 chr12 45417225 45417370 -75840160 + B1_Mus1 SINE Alu 2 147 -1 6 931 274 237 0 17 chr12 45417528 45417588 -75839942 + B2_Mm2 SINE B2 1 59 -136 6 931 366 23 0 0 chr12 45417592 45417635 -75839895 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 6 931 605 208 38 23 chr12 45417643 45417776 -75839754 + B1_Mur2 SINE Alu 2 136 -13 6 931 244 272 24 12 chr12 45418976 45419058 -75838472 - Lx8 LINE L1 -1546 5927 5845 6 931 2731 87 25 35 chr12 45419210 45419616 -75837914 - L1Md_F2 LINE L1 0 6582 6181 6 931 276 231 0 19 chr12 45420196 45420249 -75837281 - RSINE1 SINE B4 -58 107 56 6 931 806 184 0 28 chr12 45420463 45420608 -75836922 + B1_Mus2 SINE Alu 1 141 -6 6 931 456 232 37 31 chr12 45420758 45420949 -75836581 + L1M2 LINE L1 3895 4086 -2057 6 931 240 184 64 26 chr12 45420928 45421006 -75836524 + L1_Rod LINE L1 4108 4188 -1659 6 931 246 316 115 15 chr12 45421070 45421401 -75836129 + L1M2 LINE L1 4300 4663 -1480 6 931 255 276 120 76 chr12 45421944 45422128 -75835402 + L2a LINE L2 3224 3415 -11 6 931 200 321 74 0 chr12 45422145 45422226 -75835304 + MIR SINE MIR 35 121 -141 6 931 845 145 143 16 chr12 45422427 45422609 -75834921 - Lx4A LINE L1 -1 7057 6853 6 931 3017 241 111 8 chr12 45423484 45424391 -75833139 + Lx8 LINE L1 6196 7196 -277 6 931 21 0 0 0 chr12 45424572 45424593 -75832937 + AT_rich Low_complexity Low_complexity 1 21 0 6 931 2711 101 47 2 chr12 45424730 45425137 -75832393 + L1_Mus3 LINE L1 6208 6632 -6 6 931 1222 240 157 15 chr12 45425138 45425679 -75831851 + L1MB3 LINE L1 5548 6165 -18 6 931 486 370 32 44 chr12 45426836 45427085 -75830445 - MLT1F1 LTR MaLR -40 529 284 6 931 658 92 41 0 chr12 45427079 45427177 -75830353 + B2_Mm1t SINE B2 37 138 -55 6 931 320 250 12 0 chr12 45427252 45427332 -75830198 - MLT1F1 LTR MaLR -392 168 88 6 931 1156 61 0 13 chr12 45428016 45428165 -75829365 - B1_Mus2 SINE Alu 0 147 1 6 931 33 43 0 0 chr12 45428257 45428304 -75829226 + AT_rich Low_complexity Low_complexity 1 47 0 6 931 189 0 0 0 chr12 45429193 45429214 -75828316 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 931 274 250 278 38 chr12 45431751 45431884 -75825646 - MIRb SINE MIR -33 235 71 6 931 369 0 0 0 chr12 45432124 45432165 -75825365 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 931 213 39 0 0 chr12 45432268 45432294 -75825236 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 931 275 306 211 16 chr12 45432294 45432407 -75825123 - B1_Mur1 SINE Alu -10 139 1 6 931 471 18 0 0 chr12 45432449 45432505 -75825025 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 931 1251 122 0 6 chr12 45433392 45433574 -75823956 - B2_Mm2 SINE B2 -14 181 1 6 931 237 132 0 0 chr12 45433647 45433685 -75823845 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 931 230 273 186 29 chr12 45433753 45433855 -75823675 - L2b LINE L2 0 3375 3258 6 931 213 194 0 0 chr12 45434224 45434260 -75823270 + polypurine Low_complexity Low_complexity 4 39 0 6 931 261 0 0 0 chr12 45434540 45434569 -75822961 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 931 645 247 78 6 chr12 45434648 45434815 -75822715 + B3A SINE B2 2 180 -18 6 931 182 22 20 100 chr12 45434854 45434904 -75822626 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 6 931 1061 109 0 0 chr12 45434906 45435053 -75822477 - B1_Mus1 SINE Alu 0 148 2 6 931 347 105 18 0 chr12 45435267 45435324 -75822206 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 6 931 707 248 75 53 chr12 45435378 45435736 -75821794 - L1MA9 LINE L1 -6 6306 5941 6 931 950 236 35 5 chr12 45435823 45436023 -75821507 - B3 SINE B2 -6 210 5 6 931 354 302 9 9 chr12 45436033 45436140 -75821390 - PB1D10 SINE Alu -8 109 3 6 931 942 153 0 0 chr12 45436155 45436318 -75821212 + CT-rich Low_complexity Low_complexity 2 164 0 6 931 453 196 158 7 chr12 45436930 45437069 -75820461 - L1MB3 LINE L1 -105 6078 5919 6 931 721 299 26 13 chr12 45437132 45437440 -75820090 - L1MB3 LINE L1 -418 5765 5454 6 931 410 327 87 108 chr12 45437473 45437761 -75819769 + B4 SINE B4 11 292 0 6 931 774 149 0 0 chr12 45442315 45442449 -75815081 + (TTC)n Simple_repeat Simple_repeat 1 134 0 6 931 987 249 161 71 chr12 45442652 45443105 -75814425 - RMER13A LTR ERVK -366 494 1 6 931 291 279 0 102 chr12 45443145 45443233 -75814297 - ID SINE ID -144 80 2 6 931 1081 281 99 28 chr12 45443233 45443631 -75813899 + MLT1C LTR MaLR 33 460 -7 6 931 22 35 0 0 chr12 45444664 45444693 -75812837 + AT_rich Low_complexity Low_complexity 1 29 0 6 931 216 140 17 50 chr12 45445552 45445612 -75811918 + T-rich Low_complexity Low_complexity 3 60 0 6 931 977 101 0 0 chr12 45446013 45446142 -75811388 + B1_Mus1 SINE Alu 2 130 -18 6 931 21 57 0 0 chr12 45447195 45447230 -75810300 + AT_rich Low_complexity Low_complexity 1 35 0 6 931 1055 291 202 16 chr12 45447234 45447783 -75809747 + MLT1E1 LTR MaLR 1 651 -3 6 931 284 312 60 56 chr12 45447871 45448022 -75809508 - L1MB7 LINE L1 -217 6827 6672 6 931 416 317 12 47 chr12 45448022 45448191 -75809339 - RSINE1 SINE B4 0 165 3 6 931 465 274 129 24 chr12 45448191 45448741 -75808789 - L1MB7 LINE L1 -373 6671 6057 6 931 208 283 19 0 chr12 45448763 45448816 -75808714 + CT-rich Low_complexity Low_complexity 3 56 0 6 931 258 250 83 0 chr12 45448825 45448885 -75808645 - ID4_ SINE ID -17 66 2 6 931 210 290 74 21 chr12 45448892 45448987 -75808543 - PB1D9 SINE Alu 0 120 21 6 931 550 211 14 7 chr12 45448999 45449147 -75808383 - L1MB7 LINE L1 -947 6059 5911 6 931 450 256 85 8 chr12 45449270 45449400 -75808130 - B1F1 SINE Alu -9 140 1 6 931 201 39 0 0 chr12 45449513 45449539 -75807991 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 931 979 286 90 43 chr12 45449566 45450336 -75807194 - L1MB7 LINE L1 -1774 5232 4427 6 931 26 93 0 0 chr12 45450517 45450592 -75806938 + AT_rich Low_complexity Low_complexity 1 75 0 6 931 541 272 114 22 chr12 45450850 45451211 -75806319 - L1MB7 LINE L1 -4912 2190 1797 6 931 399 354 43 47 chr12 45451374 45451629 -75805901 - L1MB7 LINE L1 -5788 1546 1293 6 931 209 184 0 0 chr12 45451687 45451725 -75805805 + T-rich Low_complexity Low_complexity 1 38 0 6 931 492 117 0 0 chr12 45451909 45451986 -75805544 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 931 297 0 0 0 chr12 45452607 45452640 -75804890 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 931 246 305 231 22 chr12 45452819 45452953 -75804577 + MIRb SINE MIR 105 266 -2 6 931 225 0 0 0 chr12 45453052 45453077 -75804453 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 931 441 294 24 67 chr12 45454677 45454841 -75802689 - MER5A1 DNA MER1_type -3 163 7 6 931 306 336 9 0 chr12 45455481 45455588 -75801942 + PB1D7 SINE Alu 2 109 -11 6 931 351 334 128 21 chr12 45456319 45456557 -75800973 + MIRb SINE MIR 1 259 -9 6 931 475 339 130 62 chr12 45456959 45457814 -75799716 + L2a LINE L2 2483 3426 0 6 931 24 32 0 0 chr12 45458029 45458060 -75799470 + AT_rich Low_complexity Low_complexity 1 31 0 6 931 791 70 9 0 chr12 45458225 45458340 -75799190 + (GGAA)n Simple_repeat Simple_repeat 1 116 0 6 931 180 0 0 0 chr12 45458376 45458396 -75799134 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 931 225 0 0 0 chr12 45458789 45458814 -75798716 + (T)n Simple_repeat Simple_repeat 1 25 0 6 931 396 345 28 22 chr12 45460001 45460182 -75797348 + MER5A DNA MER1_type 3 184 -5 6 931 264 100 0 0 chr12 45462062 45462102 -75795428 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 931 1196 55 0 7 chr12 45462114 45462262 -75795268 - B1_Mm SINE Alu 0 147 1 6 931 714 277 17 17 chr12 45462532 45462712 -75794818 - B4 SINE B4 -50 242 63 6 931 292 268 37 0 chr12 45462853 45462935 -75794595 - Charlie4z DNA MER1_type -7 160 76 6 931 27 0 0 48 chr12 45463202 45463220 -75794310 + AT_rich Low_complexity Low_complexity 1 17 0 6 931 1141 75 0 7 chr12 45463220 45463368 -75794162 + B1_Mus2 SINE Alu 1 147 0 6 931 27 0 0 48 chr12 45463368 45463391 -75794139 + AT_rich Low_complexity Low_complexity 1 23 0 6 931 7522 36 0 6 chr12 45464637 45465581 -75791949 - L1Md_F2 LINE L1 -11 6571 5634 6 931 418 313 11 24 chr12 45465591 45465728 -75791802 - B1F SINE Alu -8 141 3 6 931 180 327 130 9 chr12 45466664 45466772 -75790758 + MIRb SINE MIR 34 154 -114 6 931 510 300 219 27 chr12 45466859 45467170 -75790360 + ORR1E LTR MaLR 9 379 0 6 931 243 0 0 0 chr12 45467949 45467976 -75789554 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 931 1089 80 0 0 chr12 45467976 45468114 -75789416 - B1_Mus1 SINE Alu -9 139 2 6 931 657 126 0 0 chr12 45468909 45469020 -75788510 + (TC)n Simple_repeat Simple_repeat 2 112 0 6 931 210 37 0 0 chr12 45469020 45469047 -75788483 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 931 1170 188 40 74 chr12 45469064 45469415 -75788115 + Lx9 LINE L1 7303 7641 -3 6 931 29 70 0 0 chr12 45469415 45469472 -75788058 + AT_rich Low_complexity Low_complexity 1 57 0 6 931 279 114 0 0 chr12 45469786 45469830 -75787700 + (G)n Simple_repeat Simple_repeat 1 44 0 6 931 224 292 22 22 chr12 45470383 45470474 -75787056 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 6 931 700 332 38 26 chr12 45470493 45470759 -75786771 - B4A SINE B4 -22 270 2 6 931 261 0 0 0 chr12 45470819 45470848 -75786682 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 931 1039 70 7 34 chr12 45470870 45471017 -75786513 + B1_Mus1 SINE Alu 4 146 -2 6 931 324 0 0 0 chr12 45471017 45471053 -75786477 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 931 249 108 0 0 chr12 45471054 45471091 -75786439 + (A)n Simple_repeat Simple_repeat 1 37 0 6 931 430 247 41 0 chr12 45474002 45474099 -75783431 + PB1D7 SINE Alu 6 106 -14 6 931 1120 82 7 0 chr12 45474559 45474706 -75782824 + B1_Mus1 SINE Alu 1 148 0 6 931 303 71 0 0 chr12 45474706 45474748 -75782782 + (A)n Simple_repeat Simple_repeat 1 42 0 7 931 184 361 12 24 chr12 45474854 45474939 -75782591 - L3 LINE CR1 -146 4343 4260 7 931 1110 76 0 33 chr12 45475538 45475688 -75781842 + B1_Mus1 SINE Alu 4 148 0 7 931 236 71 48 0 chr12 45475693 45475735 -75781795 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 931 2370 116 54 3 chr12 45477565 45477937 -75779593 + MTA_Mm LTR MaLR 6 396 0 7 931 21 57 0 0 chr12 45478037 45478072 -75779458 + AT_rich Low_complexity Low_complexity 1 35 0 7 931 279 278 17 9 chr12 45478219 45478335 -75779195 - L1MA10 LINE L1 -1 6333 6217 7 931 362 319 0 58 chr12 45478883 45479003 -75778527 - PB1D10 SINE Alu 0 117 5 7 931 324 308 0 44 chr12 45480256 45480392 -75777138 + ID_B1 SINE B4 91 220 -4 7 931 285 343 10 0 chr12 45480461 45480563 -75776967 - Tigger12 DNA MER2_type -1290 669 567 7 931 500 232 0 10 chr12 45480563 45480659 -75776871 + B4 SINE B4 1 95 -197 7 931 636 14 0 0 chr12 45480887 45480960 -75776570 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 931 628 330 30 20 chr12 45481144 45481342 -75776188 + B4 SINE B4 81 280 -12 7 932 265 302 106 41 chr12 45482165 45482350 -75775180 + MIR SINE MIR 52 243 -19 7 932 477 0 0 0 chr12 45482514 45482567 -75774963 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 932 627 301 51 6 chr12 45482567 45482744 -75774786 - B3 SINE B2 -18 198 14 7 932 601 175 0 16 chr12 45482786 45482914 -75774616 - Lx6 LINE L1 -1 7459 7334 7 932 1548 168 25 0 chr12 45482924 45483209 -75774321 - L1_Mur3 LINE L1 -55 5825 5534 7 932 2980 239 104 102 chr12 45483215 45483889 -75773641 - L1_Mur3 LINE L1 -6384 1344 625 7 932 521 231 0 37 chr12 45483889 45483997 -75773533 + B3 SINE B2 82 185 -31 7 932 2980 239 104 102 chr12 45483997 45484564 -75772966 - L1_Mur3 LINE L1 -6384 624 17 7 932 503 293 147 60 chr12 45484906 45485171 -75772359 - B4 SINE B4 -3 289 2 7 932 2575 83 0 6 chr12 45486273 45486626 -75770904 - L1_Mus1 LINE L1 -6 6561 6211 7 932 630 99 0 0 chr12 45486705 45486796 -75770734 + (GGGAGA)n Simple_repeat Simple_repeat 5 95 0 7 932 1139 75 0 6 chr12 45486796 45486956 -75770574 + (GGGAA)n Simple_repeat Simple_repeat 5 163 0 7 932 346 319 127 68 chr12 45487723 45487975 -75769555 - B4 SINE B4 -23 269 3 7 932 502 225 80 0 chr12 45489329 45489467 -75768063 + B1_Mur1 SINE Alu 1 149 0 7 932 290 198 162 38 chr12 45490596 45490701 -75766829 - ORR1C1 LTR MaLR -3 375 258 7 932 342 45 0 0 chr12 45491997 45492041 -75765489 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 932 2549 68 3 15 chr12 45492902 45493233 -75764297 - ORR1A2 LTR MaLR 0 327 1 7 932 253 186 204 23 chr12 45493412 45493500 -75764030 + RLTR25B LTR ERVK 405 508 -520 7 932 718 78 0 10 chr12 45493439 45493543 -75763987 + B1_Mus2 SINE Alu 43 145 -2 7 932 1006 115 6 6 chr12 45493559 45493725 -75763805 + (GAA)n Simple_repeat Simple_repeat 2 167 0 7 932 228 163 0 0 chr12 45495354 45495397 -75762133 + (CATA)n Simple_repeat Simple_repeat 2 44 0 7 932 222 268 18 18 chr12 45495419 45495476 -75762054 - RSINE1 SINE B4 -28 137 81 7 932 1509 210 109 50 chr12 45495561 45495957 -75761573 - MTD LTR MaLR 0 419 1 7 932 414 300 23 23 chr12 45496063 45496196 -75761334 + MER5A1 DNA MER1_type 13 145 -21 7 932 1166 130 16 21 chr12 45496375 45496564 -75760966 - B2_Mm2 SINE B2 -7 188 1 7 932 640 242 23 0 chr12 45496738 45496870 -75760660 - RSINE1 SINE B4 -9 156 22 7 932 458 33 17 0 chr12 45496871 45496931 -75760599 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 932 326 291 72 75 chr12 45496955 45497234 -75760296 - B4 SINE B4 -14 278 1 7 932 725 168 17 0 chr12 45497354 45497473 -75760057 + B1_Mus2 SINE Alu 15 135 -12 7 932 522 31 0 0 chr12 45497989 45498053 -75759477 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 7 932 695 159 18 33 chr12 45498073 45498219 -75759311 - B1_Mus2 SINE Alu 0 147 3 7 932 384 239 51 101 chr12 45498219 45498274 -75759256 - MT2B LTR ERVL -447 154 108 7 932 381 22 0 0 chr12 45498318 45498364 -75759166 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 932 362 339 101 27 chr12 45500200 45500458 -75757072 - L1MEg LINE L1 -4861 1223 947 1 932 4198 50 18 0 chr12 45500468 45500971 -75756559 - LTRIS3 LTR ERV1 0 512 1 2 932 391 294 106 37 chr12 45501182 45501504 -75756026 - L1MB2 LINE L1 -36 6135 5792 3 932 209 163 0 39 chr12 45502061 45502112 -75755418 + CT-rich Low_complexity Low_complexity 2 50 0 4 932 482 0 17 0 chr12 45502112 45502170 -75755360 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 932 21 36 0 0 chr12 45502352 45502380 -75755150 + AT_rich Low_complexity Low_complexity 1 28 0 6 932 195 42 0 0 chr12 45502672 45502696 -75754834 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 7 932 270 218 231 0 chr12 45503582 45503660 -75753870 + PB1D10 SINE Alu 14 109 -8 8 932 717 73 0 0 chr12 45503660 45503756 -75753774 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 9 932 196 300 0 54 chr12 45505173 45505247 -75752283 - L2b LINE L2 -1 3374 3305 1 932 185 59 59 0 chr12 45505407 45505441 -75752089 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1 932 354 310 0 33 chr12 45505848 45505954 -75751576 + AluG_3 SINE Alu 13 222 -89 1 932 385 266 179 60 chr12 45506063 45506102 -75751428 - B3 SINE B2 -10 206 156 1 932 512 89 0 12 chr12 45506102 45506182 -75751348 + (TATG)n Simple_repeat Simple_repeat 4 82 0 1 932 385 266 179 60 chr12 45506182 45506326 -75751204 - B3 SINE B2 -61 155 1 1 932 243 134 70 5 chr12 45506658 45506717 -75750813 - L1M LINE L1 -777 5391 5330 1 932 185 65 0 31 chr12 45506793 45506825 -75750705 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 932 344 203 16 0 chr12 45507067 45507131 -75750399 + ID4 SINE ID 8 72 -11 1 932 2203 239 100 36 chr12 45507207 45507688 -75749842 - ORR1D1-int LTR MaLR -419 951 434 1 932 1839 123 116 3 chr12 45507688 45507981 -75749549 - ORR1A2 LTR MaLR -1 326 1 1 932 2203 239 100 36 chr12 45507981 45508141 -75749389 - ORR1D1-int LTR MaLR -937 433 269 1 932 1250 250 6 70 chr12 45508518 45508849 -75748681 - ORR1D1-int LTR MaLR -1059 311 2 1 932 1205 219 128 3 chr12 45508854 45509183 -75748347 - ORR1D1 LTR MaLR -4 370 1 1 932 410 305 114 8 chr12 45509484 45509616 -75747914 - B4A SINE B4 -143 149 4 2 932 387 0 0 0 chr12 45510731 45510774 -75746756 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 932 375 23 0 0 chr12 45511954 45511998 -75745532 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 932 234 91 0 0 chr12 45512456 45512489 -75745041 + (A)n Simple_repeat Simple_repeat 1 33 0 2 932 618 308 70 26 chr12 45512685 45512958 -75744572 + RMER15 LTR ERVL 277 561 -14 2 932 373 175 0 30 chr12 45513379 45513479 -75744051 + CT-rich Low_complexity Low_complexity 1 97 0 2 932 586 182 24 47 chr12 45513524 45513651 -75743879 - Lx8 LINE L1 -207 7266 7143 2 932 764 285 80 39 chr12 45514077 45514467 -75743063 - L1MC3 LINE L1 -89 7696 7291 2 932 254 336 126 36 chr12 45514479 45514590 -75742940 + B3A SINE B2 48 168 -30 2 932 411 21 0 0 chr12 45514592 45514640 -75742890 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 932 1445 226 98 0 chr12 45514714 45515050 -75742480 - MTD LTR MaLR -15 404 36 3 932 641 267 13 59 chr12 45515255 45515494 -75742036 - L1MC3 LINE L1 -797 6988 6761 2 932 389 356 35 46 chr12 45515615 45515812 -75741718 + ORR1E LTR MaLR 1 195 -164 3 932 366 272 5 177 chr12 45515991 45516077 -75741453 - L1MC3 LINE L1 -1213 6572 6506 2 932 285 51 0 0 chr12 45516077 45516116 -75741414 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 3 932 1154 70 0 0 chr12 45516124 45516267 -75741263 - B1_Mus2 SINE Alu 0 147 5 3 932 366 272 5 177 chr12 45516267 45516363 -75741167 - L1MC3 LINE L1 -1280 6505 6414 2 932 709 255 154 98 chr12 45516392 45516749 -75740781 - MTE2a LTR MaLR 0 379 3 3 932 256 201 105 31 chr12 45516910 45517017 -75740513 - L1MC3 LINE L1 -375 5969 5856 2 932 283 240 0 0 chr12 45517032 45517094 -75740436 + PB1D7 SINE Alu 67 125 -2 3 932 254 195 94 94 chr12 45517143 45517239 -75740291 - L1MC3 LINE L1 -496 5848 5753 2 932 284 326 142 25 chr12 45517247 45517565 -75739965 + MLT1A0 LTR MaLR 11 365 0 3 932 4489 67 20 12 chr12 45517575 45518189 -75739341 - L1_Mus1 LINE L1 0 6567 5964 3 932 1945 216 19 24 chr12 45518197 45518610 -75738920 + MTC LTR MaLR 11 421 0 3 932 417 224 69 0 chr12 45518616 45518732 -75738798 - L1MC3 LINE L1 -2028 5757 5634 2 932 218 244 22 0 chr12 45518755 45518800 -75738730 - RSINE1 SINE B4 -118 47 2 3 932 292 260 44 88 chr12 45518818 45518932 -75738598 + MLT1A1 LTR MaLR 1 109 -256 4 932 1008 266 85 17 chr12 45518981 45519333 -75738197 + MTEa LTR MaLR 1 376 -3 4 932 298 293 10 29 chr12 45519415 45519517 -75738013 + MLT1A1 LTR MaLR 309 408 0 4 932 280 269 29 0 chr12 45519520 45519624 -75737906 - L1M4 LINE L1 -963 5183 5077 4 932 434 267 180 12 chr12 45519653 45519975 -75737555 - L1M4 LINE L1 -1129 5017 4642 4 932 492 310 89 7 chr12 45520202 45520472 -75737058 + L1ME2 LINE L1 5842 6133 -31 4 932 511 228 290 0 chr12 45520507 45520669 -75736861 - B3 SINE B2 -7 209 1 4 932 463 84 14 14 chr12 45521661 45521733 -75735797 - B2_Mm2 SINE B2 -10 185 114 4 932 32 67 0 0 chr12 45521789 45521849 -75735681 + AT_rich Low_complexity Low_complexity 1 60 0 4 932 272 347 101 10 chr12 45522027 45522126 -75735404 + ID_B1 SINE B4 68 175 -49 4 932 372 289 111 0 chr12 45522051 45522141 -75735389 + PB1D10 SINE Alu 10 109 -8 4 932 668 132 9 0 chr12 45522149 45522255 -75735275 + B2_Mm2 SINE B2 1 107 -88 4 932 193 311 22 122 chr12 45522443 45522553 -75734977 + MIRb SINE MIR 139 241 -27 5 932 609 110 0 0 chr12 45522553 45522644 -75734886 + (TTCA)n Simple_repeat Simple_repeat 1 91 0 5 932 193 311 22 122 chr12 45522644 45522672 -75734858 + MIRb SINE MIR 242 263 -5 5 932 181 275 174 70 chr12 45522653 45522739 -75734791 - L2c LINE L2 -10 3377 3283 5 932 293 301 110 43 chr12 45522781 45522944 -75734586 - L2c LINE L2 -554 2865 2692 5 932 686 245 77 162 chr12 45523966 45524380 -75733150 + MTEa LTR MaLR 1 379 0 5 932 921 35 0 0 chr12 45524584 45524697 -75732833 + (TTC)n Simple_repeat Simple_repeat 2 114 0 5 932 821 106 11 86 chr12 45524710 45524871 -75732659 - L1_Mus3 LINE L1 -7 6631 6480 5 932 1262 81 69 0 chr12 45524871 45525045 -75732485 - B2_Mm2 SINE B2 -9 186 1 5 932 821 106 11 86 chr12 45525045 45525058 -75732472 - L1_Mus3 LINE L1 -159 6479 6470 5 932 200 333 31 62 chr12 45525123 45525219 -75732311 - L2a LINE L2 -14 3412 3320 5 932 324 257 39 19 chr12 45525274 45525377 -75732153 - MER104 DNA Tc2 -48 133 29 5 932 540 81 0 0 chr12 45525829 45525903 -75731627 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 932 350 203 0 0 chr12 45526620 45526684 -75730846 - MER33 DNA MER1_type -2 322 259 6 932 1172 292 25 0 chr12 45527343 45527620 -75729910 + B4A SINE B4 8 291 -1 6 932 185 224 0 17 chr12 45527754 45527813 -75729717 + CT-rich Low_complexity Low_complexity 2 59 0 6 932 604 250 43 0 chr12 45527826 45527966 -75729564 - B1F SINE Alu -2 147 2 6 932 356 106 91 0 chr12 45527977 45528043 -75729487 - B2_Mm2 SINE B2 -2 193 122 6 932 1384 75 21 0 chr12 45528050 45528237 -75729293 - B2_Mm2 SINE B2 -4 191 1 6 932 304 272 74 0 chr12 45528255 45528336 -75729194 + MIR3 SINE MIR 93 179 -29 6 932 508 302 52 86 chr12 45528681 45528913 -75728617 + B4A SINE B4 68 291 -1 6 932 509 330 0 0 chr12 45529258 45529431 -75728099 - Lx8 LINE L1 -660 6813 6641 6 932 825 305 151 11 chr12 45529428 45529880 -75727650 + Lx8 LINE L1 6815 7329 -144 6 932 649 217 8 149 chr12 45529905 45530077 -75727453 + B3 SINE B2 3 163 -53 6 932 1174 62 0 0 chr12 45530077 45530222 -75727308 + B1_Mus1 SINE Alu 1 145 -3 7 932 649 217 8 149 chr12 45530222 45530298 -75727232 + B3 SINE B2 164 216 0 6 932 24 0 0 0 chr12 45530298 45530322 -75727208 + AT_rich Low_complexity Low_complexity 1 24 0 7 932 539 270 155 19 chr12 45530757 45530912 -75726618 - B3A SINE B2 -21 177 2 7 932 186 103 0 0 chr12 45532920 45532949 -75724581 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 7 932 254 256 65 22 chr12 45533527 45533619 -75723911 + PB1D7 SINE Alu 18 113 -7 7 932 525 174 0 0 chr12 45533728 45533826 -75723704 + GA-rich Low_complexity Low_complexity 3 100 0 7 932 284 246 14 14 chr12 45533984 45534054 -75723476 + MADE2 DNA Mariner 3 72 -8 7 932 279 263 39 13 chr12 45534128 45534205 -75723325 - ID4 SINE ID -3 80 2 7 932 236 257 113 14 chr12 45534339 45534410 -75723120 - MT2B LTR ERVL -492 109 32 7 932 487 241 36 27 chr12 45534395 45534506 -75723024 - B3 SINE B2 -6 210 99 7 932 264 77 0 0 chr12 45534522 45534561 -75722969 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 8 932 1934 172 26 16 chr12 45534564 45534947 -75722583 - Lx4B LINE L1 -18 7040 6654 8 932 315 298 81 69 chr12 45534997 45535017 -75722513 - B4A SINE B4 -47 245 164 8 932 608 208 105 23 chr12 45535017 45535150 -75722380 - B1_Mur2 SINE Alu -5 144 1 8 932 315 298 81 69 chr12 45535150 45535170 -75722360 - B4A SINE B4 -47 163 71 8 932 449 155 241 46 chr12 45535202 45535310 -75722220 - B2_Mm2 SINE B2 -66 129 1 8 932 801 154 69 0 chr12 45535314 45535444 -75722086 - B1_Mur3 SINE Alu -6 143 5 8 932 1239 27 0 26 chr12 45535636 45535788 -75721742 - B1_Mus1 SINE Alu 0 148 1 8 932 281 283 34 50 chr12 45536362 45536388 -75721142 + B1F SINE Alu 24 140 -9 8 932 404 180 32 43 chr12 45536388 45536481 -75721049 + ID_B1 SINE B4 124 215 -9 8 932 2835 52 88 0 chr12 45536955 45537319 -75720211 + MTA_Mm LTR MaLR 1 396 0 8 932 1196 130 11 0 chr12 45537566 45537743 -75719787 + B2_Mm1t SINE B2 1 179 -14 9 932 306 143 0 35 chr12 45537788 45537846 -75719684 + B2_Mm2 SINE B2 46 101 -94 9 932 225 0 0 0 chr12 45537870 45537895 -75719635 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 9 932 315 208 15 46 chr12 45540973 45541048 -75716482 + ID2 SINE ID 1 72 -11 9 932 403 290 99 41 chr12 45542382 45542555 -75714975 + B1F SINE Alu 1 149 0 9 932 1284 152 18 0 chr12 45542722 45542939 -75714591 - URR1B DNA MER1_type -4 221 1 9 932 204 200 0 0 chr12 45542956 45543001 -75714529 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 932 223 303 171 50 chr12 45543745 45543942 -75713588 + L2 LINE L2 2800 3026 -393 9 932 2139 158 37 0 chr12 45543942 45544296 -75713234 - ORR1B2 LTR MaLR 0 367 1 9 932 223 303 171 50 chr12 45544296 45544338 -75713192 + L2 LINE L2 3027 3067 -352 9 932 729 291 29 97 chr12 45544364 45544672 -75712858 - B4A SINE B4 -5 287 1 9 932 21 0 0 0 chr12 45546721 45546742 -75710788 + AT_rich Low_complexity Low_complexity 1 21 0 1 932 430 305 77 91 chr12 45547189 45547351 -75710179 + MER44A DNA MER2_type 1 168 -171 1 932 296 83 21 0 chr12 45547351 45547399 -75710131 + (TTA)n Simple_repeat Simple_repeat 2 50 0 1 932 1082 205 20 5 chr12 45547402 45547598 -75709932 - B3 SINE B2 -15 201 3 1 932 430 305 77 91 chr12 45547598 45547716 -75709814 + MER44A DNA MER2_type 169 281 -58 1 932 733 272 75 0 chr12 45547697 45547925 -75709605 + MER2 DNA MER2_type 10 254 -91 1 932 369 122 0 0 chr12 45547926 45548000 -75709530 + (T)n Simple_repeat Simple_repeat 1 74 0 1 932 49 18 0 0 chr12 45548133 45548189 -75709341 + AT_rich Low_complexity Low_complexity 1 56 0 1 932 522 214 65 7 chr12 45549184 45549339 -75708191 - L1MB4 LINE L1 -18 6162 5999 1 932 722 269 76 20 chr12 45549385 45549582 -75707948 + B4 SINE B4 11 218 -74 1 932 24 0 0 0 chr12 45549898 45549922 -75707608 + AT_rich Low_complexity Low_complexity 1 24 0 1 932 3605 240 109 11 chr12 45549932 45550976 -75706554 - Lx8 LINE L1 -143 7330 6185 1 932 1056 148 6 0 chr12 45550977 45551153 -75706377 + Lx6 LINE L1 7274 7450 -10 1 932 308 286 71 71 chr12 45551805 45552016 -75705514 + RMER15 LTR ERVL 347 557 -18 1 932 704 12 12 0 chr12 45552334 45552419 -75705111 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 932 207 0 0 0 chr12 45552435 45552458 -75705072 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 932 308 312 26 26 chr12 45553079 45553194 -75704336 - PB1D10 SINE Alu 0 117 3 1 932 346 53 35 0 chr12 45553428 45553485 -75704045 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 932 1054 88 0 0 chr12 45553485 45553622 -75703908 - B1_Mus2 SINE Alu -10 137 1 1 932 808 250 29 5 chr12 45553962 45554167 -75703363 + B3 SINE B2 1 210 -6 1 932 228 86 0 0 chr12 45555267 45555302 -75702228 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 932 449 99 0 0 chr12 45555303 45555374 -75702156 - Lx3A LINE L1 -16 6965 6895 1 932 280 229 29 31 chr12 45555732 45555806 -75701724 - B1F SINE Alu -31 89 17 1 932 253 313 0 43 chr12 45555765 45555835 -75701695 - B4A SINE B4 -150 142 76 1 932 231 74 36 36 chr12 45555897 45555953 -75701577 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 932 216 0 0 0 chr12 45556335 45556359 -75701171 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 932 198 0 0 0 chr12 45557270 45557292 -75700238 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 1 932 21 36 0 0 chr12 45557700 45557728 -75699802 + AT_rich Low_complexity Low_complexity 1 28 0 1 932 3311 269 78 34 chr12 45560469 45560942 -75696588 - Lx8 LINE L1 -3 7470 6929 1 932 297 0 0 0 chr12 45560942 45560975 -75696555 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 932 3311 269 78 34 chr12 45560975 45561722 -75695808 - Lx8 LINE L1 -545 6928 6196 1 932 321 47 0 0 chr12 45561767 45561810 -75695720 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 1 932 594 71 0 0 chr12 45562137 45562221 -75695309 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 932 524 267 123 0 chr12 45562221 45562367 -75695163 - B3 SINE B2 -52 164 1 1 932 29 28 0 0 chr12 45563398 45563434 -75694096 + AT_rich Low_complexity Low_complexity 1 36 0 1 932 1919 181 54 22 chr12 45565453 45565861 -75691669 + MTC LTR MaLR 1 421 0 1 932 19240 60 2 0 chr12 45566015 45568601 -75688929 + L1Md_F2 LINE L1 2997 5586 -297 1 932 8268 37 4 0 chr12 45568602 45569590 -75687940 + L1Md_F2 LINE L1 5588 6579 -3 1 932 22 0 0 0 chr12 45571538 45571560 -75685970 + AT_rich Low_complexity Low_complexity 1 22 0 1 932 284 247 81 133 chr12 45572608 45572781 -75684749 - RSINE1 SINE B4 0 165 2 1 932 24 32 0 0 chr12 45573015 45573046 -75684484 + AT_rich Low_complexity Low_complexity 1 31 0 1 932 21 36 0 0 chr12 45573573 45573601 -75683929 + AT_rich Low_complexity Low_complexity 1 28 0 1 932 314 324 140 26 chr12 45573861 45574089 -75683441 - MIR SINE MIR 0 262 9 1 932 269 204 0 0 chr12 45574579 45574628 -75682902 - PB1 SINE Alu -63 64 16 1 932 234 288 0 17 chr12 45574582 45574642 -75682888 - B4A SINE B4 -147 145 87 1 932 229 307 21 64 chr12 45574782 45574798 -75682732 - B4A SINE B4 -202 90 1 1 932 304 286 0 13 chr12 45574798 45574876 -75682654 - B3A SINE B2 -121 77 1 1 932 190 0 67 0 chr12 45574935 45574965 -75682565 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 932 407 312 143 12 chr12 45575166 45575425 -75682105 + MER31B LTR ERV1 6 298 -168 1 932 366 324 132 87 chr12 45575915 45576385 -75681145 + L2a LINE L2 2936 3426 0 1 932 1567 182 27 62 chr12 45576972 45577201 -75680329 + RMER17C LTR ERVK 20 235 -175 1 932 513 47 0 0 chr12 45577201 45577265 -75680265 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 932 1567 182 27 62 chr12 45577265 45577438 -75680092 + RMER17C LTR ERVK 236 407 -3 1 932 1200 141 5 5 chr12 45577596 45577781 -75679749 - B2_Mm2 SINE B2 -9 186 2 1 932 521 314 6 30 chr12 45577810 45577974 -75679556 + RSINE1 SINE B4 2 161 -4 1 932 210 388 0 0 chr12 45578031 45578098 -75679432 + ID_B1 SINE B4 91 157 -67 1 932 704 301 12 0 chr12 45578098 45578264 -75679266 + B3A SINE B2 1 168 -30 1 932 198 0 0 0 chr12 45578277 45578299 -75679231 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 932 291 93 0 0 chr12 45578603 45578646 -75678884 + (CAAT)n Simple_repeat Simple_repeat 1 43 0 1 932 222 62 0 0 chr12 45579370 45579402 -75678128 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 1 932 1120 282 32 77 chr12 45579553 45579688 -75677842 + MLT1A0 LTR MaLR 4 142 -223 1 932 2025 125 34 9 chr12 45579688 45580011 -75677519 + Lx2 LINE L1 6659 6989 -8 1 932 1120 282 32 77 chr12 45580011 45580252 -75677278 + MLT1A0 LTR MaLR 143 363 -2 1 932 315 301 21 21 chr12 45580406 45580501 -75677029 + PB1D10 SINE Alu 1 95 -22 1 932 180 0 0 0 chr12 45580513 45580533 -75676997 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1 932 222 302 219 22 chr12 45581986 45582169 -75675361 + MIRc SINE MIR 19 237 -31 1 932 330 348 36 6 chr12 45583002 45583167 -75674363 - MIRb SINE MIR -68 200 31 1 932 33684 37 1 1 chr12 45584074 45590196 -75667334 + L1Md_Gf LINE L1 1 5589 -297 1 932 9056 4 0 0 chr12 45590196 45591192 -75666338 + L1Md_T LINE L1 5587 6582 0 1 932 33684 44 1 2 chr12 45591192 45591220 -75666310 + L1Md_Gf LINE L1 5590 5613 -273 1 932 7662 18 0 0 chr12 45591220 45592144 -75665386 + L1Md_T LINE L1 4663 5586 -297 1 932 8966 8 0 0 chr12 45592144 45593139 -75664391 + L1Md_T LINE L1 5587 6581 -1 1 932 248 323 164 8 chr12 45594882 45595016 -75662514 - MER5A DNA MER1_type -24 165 11 1 932 1184 184 33 0 chr12 45595097 45595309 -75662221 + URR1B DNA MER1_type 1 219 -6 1 932 338 325 8 40 chr12 45595325 45595450 -75662080 - Lx8 LINE L1 -1140 6333 6213 1 932 180 77 0 0 chr12 45595466 45595492 -75662038 + (T)n Simple_repeat Simple_repeat 1 26 0 1 932 825 234 4 33 chr12 45595888 45596101 -75661429 - MTC LTR MaLR 0 421 165 1 932 423 0 0 0 chr12 45596386 45596433 -75661097 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 932 739 236 34 23 chr12 45596558 45596746 -75660784 + B3 SINE B2 2 193 -2 1 932 28 29 0 0 chr12 45596872 45596907 -75660623 + AT_rich Low_complexity Low_complexity 1 35 0 1 932 537 55 0 0 chr12 45596949 45597022 -75660508 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 932 1096 150 92 0 chr12 45597146 45597353 -75660177 - URR1A DNA MER1_type 0 226 1 1 932 459 268 91 129 chr12 45598267 45598477 -75659053 + B4 SINE B4 84 285 -7 1 932 587 321 95 23 chr12 45598670 45598976 -75658554 + MER58B DNA MER1_type 11 338 -3 1 932 266 298 111 13 chr12 45601714 45601867 -75655663 - MER5B DNA MER1_type -4 174 7 1 932 443 316 83 0 chr12 45603423 45603591 -75653939 + B3A SINE B2 1 182 -16 1 932 223 182 0 0 chr12 45604448 45604492 -75653038 + T-rich Low_complexity Low_complexity 1 44 0 1 932 370 298 121 0 chr12 45604495 45604619 -75652911 - ID_B1 SINE B4 0 224 86 1 932 198 0 0 0 chr12 45604761 45604783 -75652747 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 932 291 93 0 0 chr12 45604786 45604829 -75652701 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 932 853 236 56 0 chr12 45604829 45605007 -75652523 - B3 SINE B2 -28 188 1 1 932 213 324 37 9 chr12 45605801 45605910 -75651620 + MIRb SINE MIR 14 125 -143 1 932 36 40 0 0 chr12 45606047 45606097 -75651433 + AT_rich Low_complexity Low_complexity 1 50 0 1 932 7627 74 4 4 chr12 45606758 45607900 -75649630 + L1_Mus4 LINE L1 5494 6636 0 1 932 632 268 139 40 chr12 45608173 45608597 -75648933 - L1MB3 LINE L1 -33 6150 5685 1 932 205 358 43 28 chr12 45609837 45609978 -75647552 + MIRb SINE MIR 90 232 -36 1 932 384 22 0 0 chr12 45610534 45610579 -75646951 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 932 203 203 16 0 chr12 45610621 45610685 -75646845 + CT-rich Low_complexity Low_complexity 1 65 0 1 932 438 240 75 129 chr12 45611449 45611650 -75645880 + LTR40b LTR ERVL 4 193 -269 1 932 684 263 59 52 chr12 45611700 45611939 -75645591 + Lx8 LINE L1 7167 7401 -72 1 932 368 173 0 0 chr12 45611939 45612020 -75645510 + L1Md_A LINE L1 6501 6581 -1 1 932 684 263 59 52 chr12 45612020 45612085 -75645445 + Lx8 LINE L1 7402 7472 -1 1 932 558 266 142 31 chr12 45612181 45612519 -75645011 - MTD LTR MaLR -11 408 1 1 116 1190 101 21 21 chr12 45612977 45613169 -75644361 - B2_Mm2 SINE B2 -2 193 2 1 933 250 286 36 45 chr12 45614002 45614112 -75643418 + MIR SINE MIR 152 260 -2 1 933 1220 35 7 0 chr12 45614557 45614701 -75642829 - B1_Mm SINE Alu -2 145 1 1 933 2771 211 80 68 chr12 45614833 45615631 -75641899 + RLTR40 LTR ERVK 3 810 -7 1 933 252 0 0 0 chr12 45615795 45615823 -75641707 + (A)n Simple_repeat Simple_repeat 1 28 0 1 933 211 322 100 0 chr12 45616559 45616649 -75640881 + MIRb SINE MIR 25 123 -145 1 933 532 287 146 12 chr12 45616932 45617179 -75640351 - LTR16E2 LTR ERVL 0 568 289 2 933 286 340 86 72 chr12 45617246 45617398 -75640132 + ID_B1 SINE B4 2 155 -69 2 933 255 352 64 9 chr12 45617394 45617503 -75640027 - LTR16E2 LTR ERVL -435 133 19 2 933 539 278 72 98 chr12 45619632 45619965 -75637565 - L1ME1 LINE L1 -183 5995 5657 2 933 938 254 15 0 chr12 45619965 45620170 -75637360 - B3 SINE B2 -8 208 1 2 933 539 274 67 103 chr12 45620170 45620351 -75637179 - L1ME1 LINE L1 -523 5656 5482 2 933 1210 88 35 0 chr12 45621250 45621420 -75636110 - B2_Mm2 SINE B2 -19 176 1 2 933 25 0 0 0 chr12 45623054 45623079 -75634451 + AT_rich Low_complexity Low_complexity 1 25 0 2 933 234 264 68 17 chr12 45624437 45624554 -75632976 + MLT1I LTR MaLR 279 437 -11 2 933 180 256 23 0 chr12 45624914 45624957 -75632573 - L4 LINE RTE -1450 579 536 2 933 265 323 226 0 chr12 45625705 45625838 -75631692 - MLT1H2 LTR MaLR -6 483 321 2 933 439 344 13 13 chr12 45625927 45626083 -75631447 - MLT1H2 LTR MaLR -330 159 4 2 933 222 261 0 0 chr12 45627524 45627570 -75629960 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2 933 302 197 141 26 chr12 45627573 45627651 -75629879 - PB1D10 SINE Alu -6 121 35 2 933 590 271 43 7 chr12 45628140 45628281 -75629249 - RSINE1 SINE B4 -12 153 8 2 933 927 303 65 16 chr12 45628402 45628785 -75628745 + MTC LTR MaLR 18 401 -20 2 933 1978 141 128 16 chr12 45628952 45629058 -75628472 + MTC LTR MaLR 1 117 -304 2 933 188 35 35 0 chr12 45629058 45629087 -75628443 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 2 933 1978 141 128 16 chr12 45629087 45629347 -75628183 + MTC LTR MaLR 118 407 -14 2 933 378 0 0 0 chr12 45630248 45630290 -75627240 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 933 261 0 0 0 chr12 45631129 45631158 -75626372 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 2 933 485 265 17 8 chr12 45632317 45632435 -75625095 - B1F SINE Alu -1 148 30 2 933 216 175 35 17 chr12 45632450 45632508 -75625022 + (CATA)n Simple_repeat Simple_repeat 4 62 0 2 933 1716 41 0 13 chr12 45634698 45634922 -75622608 + L1Md_F3 LINE L1 6364 6584 0 2 933 201 121 0 0 chr12 45635885 45635918 -75621612 + (T)n Simple_repeat Simple_repeat 1 33 0 2 933 29 78 0 0 chr12 45639125 45639189 -75618341 + AT_rich Low_complexity Low_complexity 1 64 0 2 933 318 123 24 73 chr12 45639223 45639346 -75618184 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 933 277 272 10 52 chr12 45639546 45639643 -75617887 - MER20 DNA MER1_type -40 179 87 2 933 31 0 0 0 chr12 45641073 45641104 -75616426 + AT_rich Low_complexity Low_complexity 1 31 0 2 933 1044 50 50 14 chr12 45641289 45641430 -75616100 - B1_Mus1 SINE Alu -1 147 2 2 933 611 60 12 0 chr12 45641463 45641547 -75615983 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 933 358 314 114 42 chr12 45642313 45642328 -75615202 - L2 LINE L2 -653 2766 2754 2 933 319 279 13 0 chr12 45642328 45642407 -75615123 + ID4 SINE ID 3 82 -1 2 933 358 314 114 42 chr12 45642407 45642654 -75614876 - L2 LINE L2 -666 2753 2485 2 933 244 324 70 21 chr12 45642710 45642852 -75614678 - MIR SINE MIR -10 252 104 2 933 401 259 99 0 chr12 45644141 45644272 -75613258 - B1F SINE Alu -5 144 1 2 933 206 299 30 40 chr12 45644846 45644947 -75612583 - L2a LINE L2 -84 3342 3243 2 933 699 234 0 0 chr12 45645413 45645584 -75611946 + (TA)n Simple_repeat Simple_repeat 2 172 0 2 933 300 326 11 0 chr12 45647546 45647635 -75609895 - BC1_Mm scRNA scRNA -62 90 1 2 933 183 42 0 0 chr12 45647816 45647840 -75609690 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2 933 192 77 0 0 chr12 45648445 45648471 -75609059 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 933 239 294 24 65 chr12 45648644 45648809 -75608721 - MLT1G1 LTR MaLR -16 563 379 2 933 293 62 21 0 chr12 45649409 45649457 -75608073 + (TTTTTA)n Simple_repeat Simple_repeat 4 52 0 2 933 1036 301 46 67 chr12 45651228 45651858 -75605672 + L1MD3 LINE L1 7078 7694 -301 2 933 241 182 35 94 chr12 45651966 45652051 -75605479 + L1MD3 LINE L1 7893 7972 -23 2 933 228 86 0 0 chr12 45654124 45654159 -75603371 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 933 723 282 138 40 chr12 45654412 45654737 -75602793 - MLT1A0 LTR MaLR -8 357 1 2 933 369 0 0 0 chr12 45655740 45655781 -75601749 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 933 3191 46 20 0 chr12 45656438 45656828 -75600702 - MTB LTR MaLR -2 398 1 2 933 6637 99 23 89 chr12 45656828 45658002 -75599528 - MTB-int LTR MaLR 0 1098 3 2 933 564 89 0 0 chr12 45658002 45658081 -75599449 + ORR1A2 LTR MaLR 249 327 0 2 933 279 278 35 0 chr12 45658094 45658209 -75599321 - L1MB2 LINE L1 -36 6135 6017 2 933 679 353 109 64 chr12 45659101 45659570 -75597960 + MLT1D LTR MaLR 1 490 -15 2 933 1827 202 8 25 chr12 45661137 45661503 -75596027 - ORR1D1 LTR MaLR -4 370 11 2 933 192 125 0 0 chr12 45661618 45661650 -75595880 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 933 1987 142 6 6 chr12 45661932 45662243 -75595287 - RLTR10E LTR ERVK 0 311 1 2 933 856 237 0 15 chr12 45662404 45662605 -75594925 - B3A SINE B2 0 198 1 2 933 569 216 15 23 chr12 45662647 45662831 -75594699 - L1M4 LINE L1 -828 5484 5299 2 933 684 277 53 21 chr12 45663875 45664063 -75593467 + B3 SINE B2 23 216 0 2 933 30 0 0 0 chr12 45665733 45665763 -75591767 + AT_rich Low_complexity Low_complexity 1 30 0 2 933 1513 91 4 80 chr12 45666049 45666300 -75591230 + L1_Mus2 LINE L1 6335 6566 0 2 933 1060 115 0 6 chr12 45666707 45666864 -75590666 + B2_Mm2 SINE B2 2 157 -38 2 933 354 138 0 0 chr12 45666885 45666943 -75590587 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 933 609 314 17 6 chr12 45668254 45668430 -75589100 + B4A SINE B4 1 178 -114 2 933 28 29 0 0 chr12 45668522 45668557 -75588973 + AT_rich Low_complexity Low_complexity 1 35 0 2 933 1100 151 21 5 chr12 45669907 45670093 -75587437 - MTC LTR MaLR 0 421 233 2 933 670 180 8 0 chr12 45670099 45670221 -75587309 - MTC LTR MaLR -298 123 1 2 933 279 322 113 39 chr12 45670534 45670941 -75586589 - L1MC LINE L1 -2076 5806 5370 2 933 319 256 133 25 chr12 45671789 45671909 -75585621 + MIRb SINE MIR 136 268 0 2 933 24 0 0 0 chr12 45673725 45673749 -75583781 + AT_rich Low_complexity Low_complexity 1 24 0 2 933 212 309 124 56 chr12 45675467 45675495 -75582035 + B4A SINE B4 55 146 -143 2 933 240 222 69 69 chr12 45675495 45675553 -75581977 + B1F SINE Alu 4 61 -88 2 933 790 297 29 0 chr12 45677995 45678204 -75579326 + B3 SINE B2 2 216 0 2 933 26 0 0 0 chr12 45678382 45678408 -75579122 + AT_rich Low_complexity Low_complexity 1 26 0 2 933 745 288 24 19 chr12 45678555 45678764 -75578766 + B3 SINE B2 1 210 -6 2 933 403 94 0 0 chr12 45682285 45682349 -75575181 + Lx LINE L1 6588 6651 -3 2 933 289 98 0 0 chr12 45682349 45682390 -75575140 - RLTR22_Mus LTR ERVK -1105 703 663 2 933 3638 138 15 8 chr12 45682374 45682986 -75574544 - RLTR22_Mur LTR ERVK -1232 616 1 2 933 1708 27 11 0 chr12 45683214 45683401 -75574129 - B2_Mm1a SINE B2 -4 189 1 2 933 192 361 86 26 chr12 45687113 45687264 -75570266 - MIRb SINE MIR -72 196 37 2 933 1133 272 47 67 chr12 45688331 45688690 -75568840 - ORR1E LTR MaLR 0 359 8 2 933 261 75 0 0 chr12 45688737 45688777 -75568753 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 2 933 447 19 0 0 chr12 45688781 45688833 -75568697 + (TATG)n Simple_repeat Simple_repeat 3 54 0 2 933 292 287 0 65 chr12 45689475 45689583 -75567947 + MIRb SINE MIR 123 223 -45 2 933 420 215 0 0 chr12 45689603 45689710 -75567820 + (CAT)n Simple_repeat Simple_repeat 1 107 0 2 933 375 303 122 70 chr12 45692438 45692565 -75564965 - ID_B1 SINE B4 0 224 84 2 933 345 47 0 0 chr12 45692565 45692608 -75564922 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 933 375 303 122 70 chr12 45692608 45692693 -75564837 - ID SINE ID -141 83 1 2 933 28 61 0 0 chr12 45695714 45695763 -75561767 + AT_rich Low_complexity Low_complexity 1 49 0 2 933 220 273 0 0 chr12 45695785 45695829 -75561701 - MIRm SINE MIR -2 274 231 2 933 348 325 49 16 chr12 45695792 45695914 -75561616 - L2c LINE L2 -11 3376 3251 2 933 519 276 14 63 chr12 45695997 45696140 -75561390 + ID_B1 SINE B4 81 216 -8 2 933 586 333 34 29 chr12 45696185 45696602 -75560928 - L1M5 LINE L1 -2046 4100 3682 2 933 371 309 43 22 chr12 45696800 45696939 -75560591 + L2a LINE L2 2592 2733 -686 2 933 397 317 8 24 chr12 45696964 45697090 -75560440 - MER58B DNA MER1_type -22 319 196 2 933 402 343 77 57 chr12 45697257 45697668 -75559862 + L2a LINE L2 2936 3365 -10 2 933 1147 70 21 0 chr12 45701975 45702118 -75555412 - B1_Mus1 SINE Alu 0 148 3 2 933 366 23 0 0 chr12 45703119 45703162 -75554368 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 933 261 0 0 0 chr12 45703162 45703190 -75554340 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 933 185 0 0 39 chr12 45703584 45703610 -75553920 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 2 933 293 286 88 48 chr12 45704614 45704761 -75552769 - MER5B DNA MER1_type -18 160 8 2 933 914 264 68 47 chr12 45704882 45705475 -75552055 + L1ME1 LINE L1 5506 6106 -73 2 933 180 0 0 0 chr12 45705730 45705750 -75551780 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 933 322 360 97 35 chr12 45705869 45706157 -75551373 + L1ME1 LINE L1 5872 6177 -2 2 933 432 165 9 27 chr12 45706938 45707050 -75550480 + CT-rich Low_complexity Low_complexity 1 110 0 2 933 281 321 0 18 chr12 45707082 45707196 -75550334 + CT-rich Low_complexity Low_complexity 6 117 0 2 933 585 256 14 79 chr12 45707198 45707407 -75550123 + MLT1B LTR MaLR 176 372 -2 2 933 215 191 104 60 chr12 45707653 45707720 -75549810 - MIRb SINE MIR -162 106 37 2 933 728 304 33 55 chr12 45708251 45708526 -75549004 + B4 SINE B4 8 276 -16 2 933 393 22 0 0 chr12 45708538 45708584 -75548946 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 933 333 0 0 0 chr12 45708584 45708620 -75548910 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 933 310 297 29 10 chr12 45709183 45709285 -75548245 + MIR SINE MIR 86 189 -73 3 933 494 236 114 62 chr12 45709557 45709733 -75547797 + ID_B1 SINE B4 7 191 -33 3 933 578 221 17 276 chr12 45710063 45710263 -75547267 - RLTR21 LTR ERVK 0 1404 1254 3 933 297 89 0 0 chr12 45710263 45710308 -75547222 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 933 578 221 17 276 chr12 45710308 45710346 -75547184 - RLTR21 LTR ERVK -151 1253 1242 3 933 410 110 27 0 chr12 45710346 45710419 -75547111 + (CATA)n Simple_repeat Simple_repeat 1 75 0 3 933 4802 193 35 69 chr12 45710419 45711613 -75545917 - RLTR21 LTR ERVK -163 1241 1 3 933 1083 146 6 0 chr12 45713012 45713176 -75544354 + L1_Mur1 LINE L1 4937 5101 -785 3 933 228 86 0 0 chr12 45713190 45713225 -75544305 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 3 933 3765 120 21 0 chr12 45713262 45713839 -75543691 + L1_Mur2 LINE L1 3793 4381 -1496 3 933 3913 30 0 0 chr12 45713837 45714367 -75543163 - L1Md_F3 LINE L1 -635 5949 5420 3 933 6106 28 0 1 chr12 45714370 45715041 -75542489 + L1Md_F3 LINE L1 5913 6582 -2 3 933 3781 136 49 188 chr12 45715042 45716063 -75541467 + L1_Mur2 LINE L1 4376 5254 -623 3 933 210 241 0 0 chr12 45716322 45716409 -75541121 + (CCCTAA)n Simple_repeat Simple_repeat 4 90 0 3 933 670 179 56 63 chr12 45718729 45718872 -75538658 + RLTR20B3 LTR ERVK 22 163 -414 3 933 23 0 0 0 chr12 45718872 45718895 -75538635 + AT_rich Low_complexity Low_complexity 1 23 0 3 933 23 0 0 0 chr12 45719781 45719804 -75537726 + AT_rich Low_complexity Low_complexity 1 23 0 3 933 2390 91 68 3 chr12 45724284 45724649 -75532881 + Lx2 LINE L1 6255 6643 -354 3 933 1311 105 85 5 chr12 45724649 45724739 -75532791 + Lx2 LINE L1 6775 6881 -116 3 933 198 103 0 0 chr12 45724739 45724768 -75532762 + (TGAG)n Simple_repeat Simple_repeat 2 30 0 3 933 1311 105 85 5 chr12 45724768 45724878 -75532652 + Lx2 LINE L1 6882 6991 -6 3 933 392 130 14 0 chr12 45724915 45724984 -75532546 + (GGA)n Simple_repeat Simple_repeat 3 72 0 3 933 621 144 33 46 chr12 45724984 45725106 -75532424 + Lx LINE L1 6504 6622 -32 3 933 333 0 0 0 chr12 45725106 45725143 -75532387 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 3 933 621 144 33 46 chr12 45725143 45725173 -75532357 + Lx LINE L1 6623 6654 0 3 933 246 81 0 0 chr12 45725229 45725266 -75532264 + (TTAGGG)n Simple_repeat Simple_repeat 6 42 0 3 933 211 267 0 0 chr12 45726659 45726719 -75530811 + (TTAGGG)n Simple_repeat Simple_repeat 2 61 0 3 933 2591 226 88 7 chr12 45726816 45727910 -75529620 + Lx6 LINE L1 5143 6377 -673 3 933 309 221 19 9 chr12 45727933 45728038 -75529492 + Lx6 LINE L1 7329 7434 -26 3 933 1609 135 27 7 chr12 45728185 45728483 -75529047 + Lx4B LINE L1 5117 5420 -457 3 933 1060 202 164 41 chr12 45728483 45728833 -75528697 + RMER16 LTR ERVK 1 533 0 3 933 7952 117 0 29 chr12 45728833 45729180 -75528350 + Lx4B LINE L1 5415 5760 -1298 3 933 2703 97 42 7 chr12 45729180 45729587 -75527943 - BGLII LTR ERVK 0 421 1 3 933 7952 163 18 21 chr12 45729587 45730854 -75526676 + Lx4B LINE L1 5761 7026 -32 3 933 4717 128 38 12 chr12 45730926 45731773 -75525757 + MYSERV6-int LTR ERVK 1160 2028 -6931 3 933 782 158 0 0 chr12 45732098 45732225 -75525305 + MYSERV6-int LTR ERVK 2020 2146 -6813 3 933 1612 139 26 6 chr12 45732229 45732541 -75524989 + MYSERV6-int LTR ERVK 4711 5028 -3931 3 933 2981 158 50 20 chr12 45732572 45733166 -75524364 + MYSERV6-int LTR ERVK 4971 5582 -3377 3 933 3622 176 106 49 chr12 45733229 45734072 -75523458 - RMER12 LTR ERVK -106 1216 326 3 933 1584 145 9 31 chr12 45734072 45734393 -75523137 + MYSERV6-int LTR ERVK 6490 6803 -2156 3 933 5215 146 33 6 chr12 45734583 45734774 -75522756 + MYSERV6-int LTR ERVK 6797 6988 -1971 3 933 243 0 0 0 chr12 45734774 45734801 -75522729 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 933 5215 146 33 6 chr12 45734801 45735552 -75521978 + MYSERV6-int LTR ERVK 6989 7763 -1196 3 933 2362 151 32 41 chr12 45735555 45736018 -75521512 + RMER6B LTR ERVK 1 459 -2 3 933 905 233 98 18 chr12 45736023 45736390 -75521140 + Lx7 LINE L1 5423 5871 -1825 3 933 381 254 58 87 chr12 45737052 45737190 -75520340 - MTE2b LTR MaLR -189 190 57 3 933 400 288 57 62 chr12 45737265 45737476 -75520054 + RMER10A LTR ERVL 217 426 -16 3 933 249 235 0 6 chr12 45737518 45737574 -75519956 - MTE2b LTR MaLR -367 54 1 3 933 895 164 0 0 chr12 45737621 45737761 -75519769 - B1_Mus2 SINE Alu -7 140 1 3 933 237 297 63 42 chr12 45738046 45738141 -75519389 - ORR1E LTR MaLR -223 136 40 3 933 3624 12 0 0 chr12 45738287 45738694 -75518836 - L1Md_A LINE L1 0 6582 6176 3 933 3074 16 0 0 chr12 45738694 45739060 -75518470 + L1Md_A LINE L1 5803 6168 -414 3 933 420 77 0 0 chr12 45740109 45740174 -75517356 + (T)n Simple_repeat Simple_repeat 1 65 0 3 933 309 233 54 32 chr12 45740216 45740309 -75517221 - RLTR23 LTR ERV1 -2 428 334 3 933 1646 172 11 52 chr12 45740357 45740706 -75516824 + RLTR22_Mur LTR ERVK 325 659 -1189 3 933 338 161 0 16 chr12 45740804 45740867 -75516663 - RLTR22_Mur LTR ERVK -118 1730 1669 3 933 448 159 11 11 chr12 45740872 45740961 -75516569 + RLTR22_Mur LTR ERVK 662 750 -1098 3 933 2686 99 0 10 chr12 45740968 45741366 -75516164 - L1_Mus4 LINE L1 -3 6633 6240 3 933 2217 75 0 39 chr12 45741366 45741697 -75515833 + L1_Mus4 LINE L1 5879 6196 -440 3 933 257 224 104 0 chr12 45741697 45741764 -75515766 + RLTR22_Mur LTR ERVK 736 809 -1039 3 933 583 172 101 50 chr12 45741812 45741971 -75515559 + RLTR22_Mur LTR ERVK 1565 1731 -117 3 933 1710 247 38 5 chr12 45742245 45742668 -75514862 + Lx9 LINE L1 6528 6964 -680 3 933 1622 205 29 63 chr12 45743412 45743859 -75513671 + Lx9 LINE L1 6984 7415 -229 3 933 423 0 0 0 chr12 45743859 45743906 -75513624 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 933 375 177 17 26 chr12 45743907 45744023 -75513507 + Lx9 LINE L1 7520 7634 -10 3 934 1392 188 99 47 chr12 45744620 45744983 -75512547 - ORR1C2 LTR MaLR -2 382 1 3 934 444 318 40 75 chr12 45745239 45745467 -75512063 + Lx8 LINE L1 6824 7043 -430 3 934 497 357 41 26 chr12 45745689 45746080 -75511450 + Lx8 LINE L1 7068 7464 -9 3 934 25 0 0 0 chr12 45746080 45746105 -75511425 + AT_rich Low_complexity Low_complexity 1 25 0 3 934 5528 87 1 2 chr12 45746470 45747497 -75510033 + L1VL2 LINE L1 245 1270 -2345 3 934 38664 15 1 1 chr12 45747498 45753705 -75503825 - L1Md_A LINE L1 0 6582 413 3 934 3068 78 2 0 chr12 45753705 45754156 -75503374 + L1VL2 LINE L1 1258 1709 -1906 3 934 16610 66 8 4 chr12 45754160 45757133 -75500397 + L1Md_F2 LINE L1 3570 6555 -27 3 934 189 0 0 0 chr12 45757139 45757160 -75500370 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3 934 6417 117 44 10 chr12 45757160 45758313 -75499217 + L1VL2 LINE L1 1707 2898 -717 3 934 273 248 161 14 chr12 45758314 45758457 -75499073 - L1M4 LINE L1 -289 5885 5722 3 934 455 260 11 27 chr12 45759894 45760085 -75497445 + Lx6 LINE L1 7257 7414 -46 3 934 207 0 0 0 chr12 45760086 45760109 -75497421 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 3 934 259 291 78 16 chr12 45761165 45761294 -75496236 + B1F1 SINE Alu 2 138 -11 3 934 780 288 26 38 chr12 45762475 45762822 -75494708 - RLTR15 LTR ERVK -16 343 1 3 934 2062 164 14 65 chr12 45762839 45762965 -75494565 - MYSERV6-int LTR ERVK -17 8942 8839 3 934 2142 113 3 55 chr12 45762965 45763310 -75494220 - ORR1A2 LTR MaLR 0 327 1 3 934 2062 164 14 65 chr12 45763310 45763599 -75493931 - MYSERV6-int LTR ERVK -121 8838 8555 3 934 198 0 0 0 chr12 45763599 45763621 -75493909 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 934 2062 164 14 65 chr12 45763621 45763647 -75493883 - MYSERV6-int LTR ERVK -405 8554 8524 3 934 1017 253 90 34 chr12 45763647 45764036 -75493494 - MT2B LTR ERVL -61 540 1 3 934 213 94 0 0 chr12 45764481 45764513 -75493017 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 934 238 167 117 0 chr12 45765132 45765192 -75492338 + MLT1A0 LTR MaLR 293 359 -6 3 934 505 254 235 14 chr12 45765541 45765835 -75491695 + MTD LTR MaLR 1 373 -1 3 934 1364 192 12 71 chr12 45766388 45766725 -75490805 - Lx5 LINE L1 -977 6073 5757 3 934 3274 211 55 65 chr12 45766722 45767693 -75489837 + Lx5 LINE L1 6089 7049 -1 3 934 202 306 176 0 chr12 45767794 45767879 -75489651 - MIRc SINE MIR -167 101 2 3 934 398 308 0 0 chr12 45768169 45768247 -75489283 - RSINE1 SINE B4 -10 155 78 3 934 225 262 35 59 chr12 45768606 45768691 -75488839 - MLT1A1 LTR MaLR -58 350 268 3 934 785 231 29 6 chr12 45769821 45769991 -75487539 - ORR1A4 LTR MaLR -8 321 148 3 934 414 374 22 67 chr12 45769994 45770261 -75487269 + MLT1G1 LTR MaLR 143 397 -182 3 934 1883 153 102 30 chr12 45770356 45770720 -75486810 - ORR1B1 LTR MaLR 0 394 5 3 934 7158 53 17 4 chr12 45772002 45772948 -75484582 - L1Md_F2 LINE L1 0 6582 5625 3 934 1298 258 79 23 chr12 45773594 45774023 -75483507 - Lx7 LINE L1 -361 7335 6883 3 934 427 319 54 50 chr12 45774084 45774325 -75483205 - MIR SINE MIR -15 247 6 3 934 278 223 9 46 chr12 45774345 45774453 -75483077 + GA-rich Low_complexity Low_complexity 4 107 0 3 934 216 0 0 0 chr12 45774609 45774633 -75482897 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 934 677 37 257 9 chr12 45774633 45774742 -75482788 - B1_Mm SINE Alu -10 137 2 3 934 258 32 0 0 chr12 45774838 45774869 -75482661 + (T)n Simple_repeat Simple_repeat 1 31 0 3 934 746 130 9 0 chr12 45774869 45774984 -75482546 - ORR1D1 LTR MaLR -254 120 5 3 934 300 307 56 28 chr12 45774989 45775133 -75482397 + Charlie1a DNA MER1_type 1302 1449 -6 3 934 26 30 0 0 chr12 45775322 45775355 -75482175 + AT_rich Low_complexity Low_complexity 1 33 0 3 934 216 0 0 0 chr12 45775356 45775380 -75482150 + (T)n Simple_repeat Simple_repeat 1 24 0 3 934 2127 0 0 0 chr12 45775409 45775645 -75481885 + L1Md_T LINE L1 6347 6582 0 3 934 208 176 20 0 chr12 45775973 45776024 -75481506 + A-rich Low_complexity Low_complexity 1 52 0 3 934 291 305 79 3 chr12 45776268 45776406 -75481124 - MIR SINE MIR -85 183 30 3 934 300 135 58 0 chr12 45776549 45776601 -75480929 - RMER1B Other Other -296 770 716 3 934 831 241 70 19 chr12 45776620 45776884 -75480646 - RMER1B Other Other -450 616 201 3 934 4355 14 2 12 chr12 45777351 45777849 -75479681 - MT2_Mm LTR ERVL 0 493 1 3 934 302 0 0 0 chr12 45777849 45777887 -75479643 - MERVL-int LTR ERVL 0 5485 5448 3 934 372 167 46 35 chr12 45777887 45777974 -75479556 - ORR1A3-int LTR MaLR -1323 640 553 3 934 38624 16 14 0 chr12 45777974 45783258 -75474272 - MERVL-int LTR ERVL -125 5360 1 3 934 4355 14 2 12 chr12 45783258 45783756 -75473774 - MT2_Mm LTR ERVL 0 493 1 3 934 1161 68 0 0 chr12 45783984 45784130 -75473400 - B1_Mus2 SINE Alu -1 146 1 3 934 505 293 86 30 chr12 45784172 45784404 -75473126 + Lx8 LINE L1 7224 7468 -5 3 934 404 283 96 73 chr12 45784501 45784637 -75472893 - B3A SINE B2 -4 212 72 3 934 923 147 83 10 chr12 45784638 45784831 -75472699 - L1_Mur3 LINE L1 -2196 3684 3478 3 934 924 151 6 11 chr12 45784842 45785023 -75472507 + CT-rich Low_complexity Low_complexity 1 180 0 3 934 279 79 0 0 chr12 45785027 45785065 -75472465 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 3 934 4614 199 45 6 chr12 45785065 45785655 -75471875 - L1_Mur3 LINE L1 -2398 3482 2860 3 934 2111 161 106 19 chr12 45785655 45786079 -75471451 + RMER6B LTR ERVK 1 461 0 3 934 4614 199 45 6 chr12 45786079 45786632 -75470898 - L1_Mur3 LINE L1 -3021 2859 2296 3 934 5097 196 46 7 chr12 45786651 45788416 -75469114 + Lx7 LINE L1 546 2388 -3492 3 934 11013 171 45 114 chr12 45788412 45789106 -75468424 + Lx7 LINE L1 3039 3761 -3935 3 934 1213 218 70 18 chr12 45789106 45789433 -75468097 + RLTR15 LTR ERVK 1 344 -15 3 934 11013 171 45 114 chr12 45789433 45791857 -75465673 + Lx7 LINE L1 3762 6289 -1407 3 934 512 204 0 0 chr12 45791859 45791967 -75465563 + Lx7 LINE L1 7235 7342 -354 3 934 24 32 0 0 chr12 45791986 45792017 -75465513 + AT_rich Low_complexity Low_complexity 1 31 0 3 934 304 250 47 93 chr12 45792056 45792206 -75465324 + Lx6 LINE L1 7316 7458 -2 3 934 361 265 103 11 chr12 45792421 45792639 -75464891 + L1M4 LINE L1 4346 4593 -1553 3 934 306 288 219 6 chr12 45792730 45792894 -75464636 + L1M4 LINE L1 4728 4926 -1220 3 934 1891 260 16 5 chr12 45793095 45793544 -75463986 - Lx5 LINE L1 -15 7035 6582 3 934 407 245 2 0 chr12 45793569 45793663 -75463867 - Lx5 LINE L1 -683 6375 6257 3 934 2102 138 20 0 chr12 45793668 45794022 -75463508 + L1_Mur2 LINE L1 5515 5875 -2 3 934 21792 75 3 3 chr12 45794069 45797833 -75459697 - L1Md_F2 LINE L1 -15 6567 2803 4 934 35268 41 1 13 chr12 45797825 45801464 -75456066 - L1Md_T LINE L1 -1 6584 2968 4 934 3686 2 0 0 chr12 45801464 45801871 -75455659 + L1Md_T LINE L1 6164 6570 -12 4 934 35268 52 12 19 chr12 45801871 45804538 -75452992 - L1Md_T LINE L1 -2919 2967 250 4 934 352 47 0 0 chr12 45804538 45804581 -75452949 + ORR1A3 LTR MaLR 244 286 -40 4 934 862 80 160 32 chr12 45804581 45804737 -75452793 - Lx3B LINE L1 -195 6778 6603 4 934 1042 157 16 27 chr12 45804737 45804920 -75452610 + Lx3B LINE L1 6790 6970 -3 4 934 265 146 0 0 chr12 45804942 45804983 -75452547 + ORR1A3 LTR MaLR 272 312 -14 4 934 1005 298 49 31 chr12 45804984 45805372 -75452158 + Lx8 LINE L1 6773 7167 -306 4 934 259 219 13 40 chr12 45805689 45805765 -75451765 + L1M3 LINE L1 5587 5660 -508 4 934 907 111 89 0 chr12 45805769 45805904 -75451626 + B1_Mm SINE Alu 1 147 0 4 934 483 145 0 0 chr12 45805904 45805987 -75451543 + (GAAAA)n Simple_repeat Simple_repeat 3 85 0 4 934 1449 109 4 8 chr12 45805994 45806235 -75451295 - Lx3_Mus LINE L1 -721 6288 6049 4 934 3015 102 50 0 chr12 45806235 45806562 -75450968 + Lx3_Mus LINE L1 6542 6871 -138 4 934 198 0 0 0 chr12 45806562 45806584 -75450946 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 4 934 3015 102 50 0 chr12 45806584 45806697 -75450833 + Lx3_Mus LINE L1 6872 7003 -6 4 934 271 326 122 29 chr12 45807338 45807477 -75450053 + MER5A DNA MER1_type 38 189 0 4 934 402 21 0 0 chr12 45807636 45807683 -75449847 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 934 724 284 166 93 chr12 45807683 45808111 -75449419 - MT2A LTR ERVL -74 459 1 4 934 6067 66 0 0 chr12 45808260 45809018 -75448512 - L1_Mus2 LINE L1 0 6566 5809 4 934 702 255 56 92 chr12 45809054 45809371 -75448159 - L1VL1 LINE L1 -5924 498 4 4 934 225 132 0 0 chr12 45810600 45810638 -75446892 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 4 934 312 27 0 0 chr12 45810664 45810701 -75446829 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 934 459 147 80 0 chr12 45810722 45810797 -75446733 + B4 SINE B4 6 86 -206 4 934 1548 301 33 70 chr12 45810905 45810979 -75446551 - Lx7 LINE L1 -1014 6682 6616 4 934 1313 148 219 46 chr12 45810979 45811304 -75446226 - ORR1C2 LTR MaLR -3 381 1 4 934 1548 301 33 70 chr12 45811304 45812102 -75445428 - Lx7 LINE L1 -1081 6615 5842 4 934 1448 283 47 2 chr12 45812259 45812744 -75444786 - Lx7 LINE L1 -90 5790 5284 4 934 710 346 21 11 chr12 45812754 45813184 -75444346 + Lx7 LINE L1 6975 7423 -50 4 934 570 152 8 16 chr12 45813186 45813313 -75444217 + GA-rich Low_complexity Low_complexity 1 126 0 4 934 2890 12 0 0 chr12 45813386 45813708 -75443822 - RLTRETN_Mm LTR ERVK 0 322 1 4 934 40420 19 0 2 chr12 45813708 45818563 -75438967 - MMETn-int LTR ERVK 0 4844 1 4 934 2913 6 0 0 chr12 45818563 45818885 -75438645 - RLTRETN_Mm LTR ERVK 0 322 1 4 934 612 319 37 6 chr12 45818954 45819115 -75438415 + B4 SINE B4 127 292 0 4 934 7423 74 2 1 chr12 45820415 45821692 -75435838 - L1Md_F2 LINE L1 -13 6569 5291 4 934 3552 45 7 5 chr12 45821716 45822160 -75435370 - L1Md_F2 LINE L1 -2 6580 6136 4 934 385 42 0 0 chr12 45822160 45822208 -75435322 - L1Md_F2 LINE L1 -782 5101 5054 4 934 19916 95 15 5 chr12 45822202 45826022 -75431508 - L1Md_F2 LINE L1 -1635 4248 392 4 934 231 88 0 0 chr12 45826055 45826089 -75431441 + (T)n Simple_repeat Simple_repeat 1 34 0 4 934 922 96 7 0 chr12 45826329 45826464 -75431066 + B1_Mm SINE Alu 2 137 -10 4 934 207 0 0 0 chr12 45826464 45826487 -75431043 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 934 1062 147 37 0 chr12 45827069 45827260 -75430270 + Lx5 LINE L1 6497 6694 -356 4 934 414 157 0 0 chr12 45828016 45828086 -75429444 - L1_Mur2 LINE L1 -932 4945 4876 4 934 3416 189 53 26 chr12 45828086 45828843 -75428687 + Lx5 LINE L1 6274 7050 0 4 934 244 150 67 0 chr12 45829513 45829573 -75427957 - RLTR19C LTR ERVK -409 97 34 4 934 1040 225 81 120 chr12 45829735 45830144 -75427386 + RLTR9C LTR ERVK 1 393 0 4 934 1721 230 52 15 chr12 45830720 45831122 -75426408 + MTD LTR MaLR 3 419 0 4 934 2148 115 82 15 chr12 45831278 45831667 -75425863 - RLTR9F LTR ERVK 0 415 1 4 934 21 36 0 0 chr12 45832047 45832075 -75425455 + AT_rich Low_complexity Low_complexity 1 28 0 4 934 38565 43 0 1 chr12 45832101 45837555 -75419975 - L1Md_T LINE L1 0 6585 1041 4 934 2570 96 77 114 chr12 45837555 45838048 -75419482 - IAPLTR2_Mm LTR ERVK 0 475 1 4 934 8316 67 0 23 chr12 45838048 45839070 -75418460 - L1Md_T LINE L1 -5482 1040 38 4 934 999 234 9 5 chr12 45840067 45840277 -75417253 + B3 SINE B2 6 216 0 4 934 8627 30 0 3 chr12 45840650 45841582 -75415948 + RLTR13B3 LTR ERVK 1 929 0 4 934 1126 91 18 6 chr12 45841621 45841787 -75415743 + RMER6-int LTR ERVK 3010 3177 0 4 934 2083 137 106 22 chr12 45841787 45842111 -75415419 + RMER6D LTR ERVK 1 337 -383 4 934 432 0 0 0 chr12 45842111 45842159 -75415371 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 934 2083 137 106 22 chr12 45842159 45842238 -75415292 + RMER6D LTR ERVK 338 438 -282 4 934 1601 158 21 18 chr12 45842238 45842521 -75415009 + Lx LINE L1 6367 6650 -4 4 934 432 322 36 63 chr12 45842549 45842771 -75414759 + MLT1A1 LTR MaLR 181 396 -12 4 934 423 0 0 0 chr12 45842771 45842818 -75414712 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 934 1418 135 0 92 chr12 45842819 45842924 -75414606 + RMER6D LTR ERVK 472 563 -157 4 934 3371 67 0 44 chr12 45842924 45843376 -75414154 + L1Md_F2 LINE L1 6149 6580 -2 4 934 1418 135 0 92 chr12 45843376 45843531 -75413999 + RMER6D LTR ERVK 564 708 -12 4 934 726 235 40 15 chr12 45843621 45843820 -75413710 + L1_Rod LINE L1 464 667 -6505 4 934 381 107 0 0 chr12 45843891 45843947 -75413583 - ORR1A4 LTR MaLR 0 329 274 4 934 10180 27 1 0 chr12 45843947 45845801 -75411729 - L1Md_T LINE L1 -1 6581 4727 4 934 1323 172 6 149 chr12 45845801 45846116 -75411414 - ORR1A4 LTR MaLR -41 288 19 4 934 3314 185 188 72 chr12 45846501 45847309 -75410221 + RMER19B LTR ERVK 1 902 0 4 934 7883 153 45 10 chr12 45847309 45848991 -75408539 + MurERV4_19-int LTR ERVK 1 1741 -4039 4 934 1620 97 37 52 chr12 45848991 45849263 -75408267 - L1_Mus3 LINE L1 -31 6607 6340 4 934 1826 170 113 12 chr12 45849327 45849672 -75407858 - RLTR14 LTR ERV1 0 382 3 4 934 268 167 0 70 chr12 45849819 45849890 -75407640 - L1MCc LINE L1 -4974 1449 1384 4 934 533 294 105 0 chr12 45850274 45850417 -75407113 + B3 SINE B2 8 165 -51 4 934 336 94 0 0 chr12 45850417 45850470 -75407060 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 934 446 211 42 10 chr12 45850728 45850824 -75406706 + B1_Mur4 SINE Alu 1 99 -51 4 934 1676 293 104 52 chr12 45851094 45851238 -75406292 - Lx9 LINE L1 -15 7629 7474 4 934 210 71 0 0 chr12 45851238 45851266 -75406264 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 934 1676 293 104 52 chr12 45851266 45851956 -75405574 - Lx9 LINE L1 -171 7473 6752 4 934 1968 257 8 66 chr12 45851961 45852585 -75404945 - L1_Rod LINE L1 0 5847 5260 4 934 331 161 16 0 chr12 45852837 45852899 -75404631 - RLTR22_Mur LTR ERVK -583 1265 1203 4 934 24603 109 147 18 chr12 45852905 45858494 -75399036 - L1Md_F2 LINE L1 0 6582 217 4 934 222 37 0 0 chr12 45859236 45859263 -75398267 + (TCC)n Simple_repeat Simple_repeat 3 29 0 4 934 518 151 25 16 chr12 45859413 45859534 -75397996 + CT-rich Low_complexity Low_complexity 3 124 0 4 934 2472 249 65 38 chr12 45860075 45861018 -75396512 - L1_Rod LINE L1 -571 5276 4309 4 934 967 256 5 5 chr12 45861039 45861243 -75396287 - B3 SINE B2 -4 212 9 4 934 624 161 73 0 chr12 45861796 45861920 -75395610 - Lx4A LINE L1 0 7058 6926 4 934 1761 271 87 7 chr12 45861939 45862549 -75394981 - L1_Mur3 LINE L1 -1591 4289 3631 4 934 3230 84 2 22 chr12 45862555 45862970 -75394560 + MTB_Mm LTR MaLR 1 407 0 4 934 6098 134 41 83 chr12 45862970 45864114 -75393416 + MTB_Mm-int LTR MaLR 1 1096 -2 4 934 3396 59 2 22 chr12 45864116 45864531 -75392999 + MTB_Mm LTR MaLR 1 407 0 4 934 547 328 15 0 chr12 45865295 45865499 -75392031 - MERVK26-int LTR ERVK -322 6597 6391 4 934 306 326 23 30 chr12 45865568 45865701 -75391829 - MERVK26-int LTR ERVK -945 5974 5843 4 934 3297 202 51 14 chr12 45866064 45866708 -75390822 - RMER1B Other Other -2 1064 397 4 934 3084 24 3 0 chr12 45866708 45867044 -75390486 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 934 20999 15 11 3 chr12 45867044 45869388 -75388142 - IAPEz-int LTR ERVK 0 6481 4117 4 934 28747 38 33 23 chr12 45869380 45872923 -75384607 - IAPEz-int LTR ERVK -2896 3585 8 4 934 3057 24 9 0 chr12 45872923 45873257 -75384273 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 934 2216 257 44 0 chr12 45873268 45873869 -75383661 - RMER1B Other Other -560 506 10 4 934 4705 254 65 35 chr12 45873893 45874768 -75382762 - L1_Rod LINE L1 -2816 3031 2108 4 934 3659 25 2 0 chr12 45874768 45875163 -75382367 + MTA_Mm LTR MaLR 1 396 0 4 116 10134 9 18 1 chr12 45875163 45876243 -75381287 + MTA_Mm-int LTR MaLR 1 1098 0 4 935 3659 25 2 0 chr12 45876243 45876638 -75380892 + MTA_Mm LTR MaLR 1 396 0 4 935 4705 254 65 35 chr12 45876638 45877170 -75380360 - L1_Rod LINE L1 -3740 2107 1566 4 935 2433 64 0 17 chr12 45877170 45877471 -75380059 - L1_Mus1 LINE L1 0 6567 6272 4 935 4705 254 65 35 chr12 45877471 45877744 -75379786 - L1_Rod LINE L1 -4282 1565 1299 4 935 303 283 9 86 chr12 45877825 45877941 -75379589 + Lx9 LINE L1 7226 7332 -312 4 935 21 36 0 0 chr12 45878050 45878078 -75379452 + AT_rich Low_complexity Low_complexity 1 28 0 4 935 270 230 48 29 chr12 45878167 45878270 -75379260 - L1_Rod LINE L1 -4540 1307 1203 4 935 1960 132 3 131 chr12 45878275 45878650 -75378880 + ORR1A4 LTR MaLR 1 327 -2 4 935 544 198 117 0 chr12 45878652 45878763 -75378767 - B1_Mur3 SINE Alu -25 124 1 4 935 348 338 0 0 chr12 45878698 45878778 -75378752 - B4A SINE B4 -142 150 71 4 935 408 40 0 0 chr12 45879107 45879157 -75378373 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 935 700 323 87 29 chr12 45879359 45879671 -75377859 + MLT2B3 LTR ERVL 53 382 -172 4 935 580 309 37 33 chr12 45880586 45880857 -75376673 + L1MC5 LINE L1 6968 7239 -722 4 935 326 301 62 0 chr12 45881034 45881147 -75376383 - LTR87 LTR ERVL? -123 501 382 4 935 439 20 0 0 chr12 45881669 45881720 -75375810 - L1_Mm LINE L1 -2670 3213 3163 4 935 3349 11 0 42 chr12 45881720 45882103 -75375427 + IAPLTR1_Mm LTR ERVK 1 367 0 4 935 3502 80 32 14 chr12 45882103 45882817 -75374713 + IAPEz-int LTR ERVK 8 662 -5819 4 935 446 66 0 32 chr12 45882817 45882880 -75374650 + IAPEz-int LTR ERVK 1359 1419 -5062 4 935 1798 123 4 15 chr12 45882869 45883134 -75374396 + IAPEz-int LTR ERVK 2236 2497 -5183 4 935 937 88 24 0 chr12 45883129 45883254 -75374276 + IAPEz-int LTR ERVK 4783 4910 -2770 4 935 26651 18 1 2 chr12 45883254 45886215 -75371315 + IAPEz-int LTR ERVK 3525 6481 0 4 935 3349 11 0 42 chr12 45886215 45886598 -75370932 + IAPLTR1_Mm LTR ERVK 1 367 0 4 935 987 51 22 0 chr12 45886598 45886735 -75370795 - L1_Mm LINE L1 -2715 3168 3029 4 935 5032 58 0 0 chr12 45886735 45887323 -75370207 + L1Md_F2 LINE L1 5995 6582 0 4 935 1383 134 23 0 chr12 45887689 45887906 -75369624 - Lx2 LINE L1 -6 6991 6770 4 935 2893 110 24 2 chr12 45887906 45888324 -75369206 - Lx2 LINE L1 -357 6640 6214 4 935 180 0 0 0 chr12 45888671 45888691 -75368839 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 935 393 124 9 0 chr12 45888707 45888771 -75368759 - B2_Mm2 SINE B2 -102 114 47 4 935 444 77 0 0 chr12 45888888 45888953 -75368577 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 935 235 274 96 11 chr12 45889240 45889417 -75368113 + L1MC5 LINE L1 7000 7191 -770 4 935 292 301 110 22 chr12 45889500 45889636 -75367894 + B1F1 SINE Alu 1 148 -1 4 935 232 275 159 0 chr12 45889641 45889710 -75367820 + ID SINE ID 5 84 -140 4 935 335 329 158 0 chr12 45889814 45890042 -75367488 + L1MC5 LINE L1 7313 7576 -385 4 935 437 80 13 0 chr12 45890381 45890456 -75367074 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 4 935 36155 45 0 3 chr12 45890504 45897005 -75360525 - L1Md_T LINE L1 0 6585 8 4 935 1615 241 29 19 chr12 45897192 45897568 -75359962 - RLTR14 LTR ERV1 0 382 3 4 935 1141 76 0 7 chr12 45899933 45900079 -75357451 - B1_Mus1 SINE Alu -2 146 2 5 935 353 350 46 60 chr12 45900691 45900891 -75356639 - Lx8 LINE L1 -6 7467 7271 5 935 2977 44 8 3 chr12 45900891 45901254 -75356276 + RLTR10B2 LTR ERVK 1 365 0 5 935 353 350 46 60 chr12 45901254 45901552 -75355978 - Lx8 LINE L1 -203 7270 6976 5 935 6580 204 59 23 chr12 45901551 45902879 -75354651 + Lx6 LINE L1 5358 6748 -712 5 935 558 0 0 0 chr12 45902879 45902941 -75354589 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 5 935 6580 224 50 27 chr12 45902941 45903466 -75354064 + Lx6 LINE L1 6749 7279 -181 5 935 268 292 67 0 chr12 45903534 45903623 -75353907 + Lx7 LINE L1 7189 7283 -413 5 935 34 42 0 0 chr12 45903801 45903849 -75353681 + AT_rich Low_complexity Low_complexity 1 48 0 5 935 852 223 94 25 chr12 45903862 45904064 -75353466 - B3 SINE B2 0 216 1 5 935 1500 284 66 45 chr12 45904073 45904677 -75352853 - Lx8 LINE L1 -549 6924 6299 5 935 900 268 44 61 chr12 45904677 45905038 -75352492 + ORR1E LTR MaLR 3 357 -2 5 935 1500 284 66 45 chr12 45905038 45905129 -75352401 - Lx8 LINE L1 -1175 6298 6214 5 935 2709 149 113 36 chr12 45906210 45906739 -75350791 + RMER4B LTR ERVK 16 585 0 5 935 320 138 22 33 chr12 45906801 45906891 -75350639 + T-rich Low_complexity Low_complexity 4 92 0 5 935 2398 63 9 6 chr12 45907373 45907694 -75349836 + L1Md_F2 LINE L1 6260 6581 -1 5 935 1796 166 24 39 chr12 45908651 45908989 -75348541 - ORR1B1 LTR MaLR 0 394 62 5 935 3492 181 37 23 chr12 45908991 45909858 -75347672 - L1_Mur3 LINE L1 -3799 2078 1203 5 935 198 0 0 0 chr12 45909858 45909880 -75347650 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 935 1334 221 32 90 chr12 45909880 45910212 -75347318 - L1_Mur3 LINE L1 -6514 1214 904 5 935 854 166 129 15 chr12 45910924 45911126 -75346404 + URR1A DNA MER1_type 1 225 -1 5 935 1857 151 94 21 chr12 45913649 45914022 -75343508 + Lx3C LINE L1 6567 6966 -10 5 935 288 0 0 0 chr12 45914022 45914054 -75343476 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 935 1717 182 67 28 chr12 45914589 45914945 -75342585 - ORR1C1 LTR MaLR -8 370 1 5 935 4936 220 57 28 chr12 45914945 45916133 -75341397 - ORR1C1-int LTR MaLR 0 1370 148 5 935 320 159 95 0 chr12 45916138 45916201 -75341329 + ORR1B2 LTR MaLR 61 129 -238 5 935 1565 164 76 45 chr12 45916196 45916624 -75340906 + ORR1B1 LTR MaLR 15 394 0 5 935 365 224 74 41 chr12 45916624 45916745 -75340785 - ORR1C1-int LTR MaLR -1384 125 1 5 935 1684 210 21 27 chr12 45916749 45917125 -75340405 - ORR1C1 LTR MaLR -4 374 1 5 935 456 282 66 141 chr12 45917130 45917477 -75340053 - Lx8 LINE L1 -365 7108 6788 5 935 1657 162 111 41 chr12 45917547 45917969 -75339561 + RMER6C LTR ERVK 1 477 -243 5 935 349 23 23 0 chr12 45917973 45918016 -75339514 + HAL1-3A_ME LINE L1 1968 2011 -847 5 935 333 0 0 0 chr12 45918016 45918053 -75339477 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 935 542 221 141 42 chr12 45918054 45918196 -75339334 + RMER6C LTR ERVK 368 523 -197 5 935 3829 170 93 68 chr12 45918204 45919055 -75338475 + RMER19B LTR ERVK 2 873 -29 5 935 1117 105 40 23 chr12 45919055 45919230 -75338300 + B2_Mm1t SINE B2 2 179 -14 5 935 281 167 0 36 chr12 45919317 45919373 -75338157 + B2_Mm2 SINE B2 48 101 -94 5 935 424 141 51 0 chr12 45919468 45919546 -75337984 + RMER6C LTR ERVK 530 611 -79 5 935 422 306 80 42 chr12 45919555 45919767 -75337763 - Lx8 LINE L1 -760 6713 6494 5 935 1999 171 5 60 chr12 45920776 45921174 -75336356 - ORR1C1 LTR MaLR -2 376 1 5 935 308 336 0 8 chr12 45921997 45922114 -75335416 + PB1D10 SINE Alu 1 116 -1 5 935 431 306 0 56 chr12 45922152 45922296 -75335234 + B1_Mur1 SINE Alu 7 143 -7 5 935 270 314 77 21 chr12 45922766 45922909 -75334621 + MIRc SINE MIR 115 265 -3 5 935 238 81 27 0 chr12 45923442 45923479 -75334051 - MTD LTR MaLR -14 405 368 5 935 285 29 0 0 chr12 45923481 45923515 -75334015 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 935 673 239 13 19 chr12 45923516 45923674 -75333856 - MTD LTR MaLR -238 181 25 5 935 226 267 115 39 chr12 45923710 45923788 -75333742 + LTR33B LTR ERVL 401 484 -19 5 935 2205 178 10 58 chr12 45923833 45924347 -75333183 - L1_Mur3 LINE L1 -1265 4612 4124 5 935 344 23 0 0 chr12 45924347 45924390 -75333140 + MTB LTR MaLR 1 43 -364 5 935 414 152 13 0 chr12 45924399 45924478 -75333052 - L1_Mur3 LINE L1 -2209 3671 3592 5 935 2552 68 3 18 chr12 45924482 45924825 -75332705 + MTB LTR MaLR 63 400 0 5 935 6456 189 65 20 chr12 45924825 45925456 -75332074 - L1_Mur3 LINE L1 -1751 4129 3480 5 935 195 42 0 0 chr12 45925456 45925480 -75332050 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 5 935 6456 189 65 20 chr12 45925480 45926575 -75330955 - L1_Mur3 LINE L1 -2401 3479 2327 5 935 4417 206 36 66 chr12 45926604 45927900 -75329630 - Lx3_Mus LINE L1 0 7009 5752 5 935 3975 152 55 82 chr12 45927394 45928408 -75329122 + L1_Mus1 LINE L1 5588 6654 0 5 935 1026 80 66 0 chr12 45928429 45928566 -75328964 + B1_Mm SINE Alu 1 146 -1 5 935 3779 109 3 7 chr12 45928576 45929165 -75328365 + Lx3_Mus LINE L1 5785 6371 -638 5 935 1091 178 21 13 chr12 45929163 45929397 -75328133 - L1_Mur3 LINE L1 -3545 2332 2097 5 935 472 332 9 5 chr12 45929394 45929615 -75327915 - L1_Mur3 LINE L1 -7410 318 97 5 935 975 278 85 20 chr12 45929611 45930178 -75327352 - L1_Rod LINE L1 -4351 1496 898 5 935 5072 106 11 69 chr12 45930727 45931580 -75325950 - RLTR13B4 LTR ERVK 0 803 1 5 935 451 104 15 0 chr12 45931882 45931949 -75325581 - URR1B DNA MER1_type 0 225 158 5 935 7716 123 53 55 chr12 45931949 45933530 -75324000 + Lx2 LINE L1 5365 6996 -1 5 935 733 245 13 0 chr12 45933544 45933695 -75323835 - URR1B DNA MER1_type -72 153 1 5 935 504 0 0 0 chr12 45934156 45934212 -75323318 + (CAGAG)n Simple_repeat Simple_repeat 2 57 0 5 935 23 33 0 0 chr12 45934311 45934341 -75323189 + AT_rich Low_complexity Low_complexity 1 30 0 5 935 6876 54 1 13 chr12 45934355 45935279 -75322251 - L1Md_F2 LINE L1 0 6582 5670 5 935 244 345 75 8 chr12 45935361 45935481 -75322049 + MamRep605 Unknown Unknown 601 728 -148 5 935 21 36 0 0 chr12 45935620 45935648 -75321882 + AT_rich Low_complexity Low_complexity 1 28 0 5 935 270 0 0 0 chr12 45935947 45935977 -75321553 + (CAT)n Simple_repeat Simple_repeat 3 32 0 5 935 440 270 0 59 chr12 45935979 45936097 -75321433 - PB1D9 SINE Alu -1 119 9 5 935 22 35 0 0 chr12 45936202 45936231 -75321299 + AT_rich Low_complexity Low_complexity 1 29 0 5 935 205 267 33 0 chr12 45936231 45936291 -75321239 - MIRc SINE MIR -96 172 111 5 935 3357 38 0 8 chr12 45936338 45936737 -75320793 + MTA_Mm LTR MaLR 1 396 0 5 935 382 311 7 88 chr12 45936745 45936893 -75320637 + MER63B DNA AcHobo 301 436 0 5 935 333 232 21 39 chr12 45938141 45938353 -75319177 - L1M LINE L1 -678 5478 5254 5 935 668 254 0 27 chr12 45938483 45938629 -75318901 - B1_Mur2 SINE Alu -6 143 2 5 935 871 236 41 52 chr12 45938664 45938955 -75318575 - MLT1B LTR MaLR -33 357 70 5 935 873 246 129 24 chr12 45939326 45939613 -75317917 + RMER15 LTR ERVL 259 575 0 5 935 245 355 48 8 chr12 45939958 45940083 -75317447 - MamRep605 Unknown Unknown -65 811 682 5 935 185 122 49 0 chr12 45940171 45940212 -75317318 + A-rich Low_complexity Low_complexity 3 45 0 5 935 236 314 114 0 chr12 45940356 45940461 -75317069 - MER45A DNA Tip100 0 178 62 5 935 280 212 45 0 chr12 45943077 45943143 -75314387 - MLT1D LTR MaLR -2 503 435 5 935 612 268 55 62 chr12 45943223 45943513 -75314017 - B4A SINE B4 -4 288 1 5 935 240 270 0 31 chr12 45943694 45943759 -75313771 + T-rich Low_complexity Low_complexity 1 63 0 5 935 498 296 83 44 chr12 45943798 45944003 -75313527 - MLT1D LTR MaLR -292 213 1 5 935 1940 160 40 91 chr12 45944208 45944606 -75312924 + ORR1B1 LTR MaLR 6 383 -11 5 935 263 316 10 10 chr12 45945158 45945254 -75312276 - MIRb SINE MIR -2 266 171 5 935 1276 154 188 28 chr12 45945588 45945875 -75311655 - ORR1C1 LTR MaLR -45 333 1 5 935 514 0 30 0 chr12 45946036 45946102 -75311428 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 5 935 261 89 109 22 chr12 45946109 45946155 -75311375 - B1F1 SINE Alu -7 142 93 5 935 192 111 0 0 chr12 45946418 45946454 -75311076 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 5 935 1140 57 0 0 chr12 45946454 45946594 -75310936 - B1_Mus2 SINE Alu -7 140 1 5 935 880 111 0 14 chr12 45946597 45946743 -75310787 + (TTTTC)n Simple_repeat Simple_repeat 2 145 0 5 935 3603 68 0 0 chr12 45946780 45947236 -75310294 - L1_Mus1 LINE L1 -1 6566 6111 5 935 225 335 96 45 chr12 45947237 45947395 -75310135 - L2c LINE L2 -268 3158 2991 5 935 217 256 0 24 chr12 45947498 45947582 -75309948 + CT-rich Low_complexity Low_complexity 4 85 0 5 935 234 23 45 23 chr12 45948221 45948265 -75309265 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 935 182 268 141 0 chr12 45949687 45949758 -75307772 - MIRb SINE MIR -8 260 180 5 935 360 0 0 0 chr12 45949942 45949982 -75307548 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 935 239 200 100 0 chr12 45950039 45950099 -75307431 - ID4 SINE ID -14 69 4 5 935 2104 212 110 29 chr12 45951052 45951543 -75305987 + RMER15 LTR ERVL 27 557 -18 5 935 200 128 0 25 chr12 45951759 45951799 -75305731 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 935 678 65 0 0 chr12 45956399 45956491 -75301039 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 935 789 11 0 0 chr12 45956631 45956721 -75300809 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 5 935 543 285 70 55 chr12 45958186 45958508 -75299022 + MLT1A0 LTR MaLR 1 361 -4 5 935 1103 114 0 6 chr12 45958900 45959076 -75298454 + (GGGAGA)n Simple_repeat Simple_repeat 4 178 0 5 935 317 354 27 24 chr12 45960372 45960546 -75296984 - MIRc SINE MIR -21 187 8 5 935 22 35 0 0 chr12 45962702 45962731 -75294799 + AT_rich Low_complexity Low_complexity 1 29 0 5 935 453 36 0 0 chr12 45962741 45962796 -75294734 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 935 261 0 0 0 chr12 45962796 45962824 -75294706 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 935 211 296 109 30 chr12 45962931 45963032 -75294498 - PB1D9 SINE Alu -7 113 5 5 935 306 161 18 18 chr12 45963064 45963121 -75294409 - ID4 SINE ID -12 71 15 5 935 1301 244 54 43 chr12 45964621 45964989 -75292541 + MTEa LTR MaLR 1 372 -7 5 935 525 314 57 77 chr12 45964992 45965201 -75292329 + B4 SINE B4 2 220 -72 5 935 610 250 51 46 chr12 45965201 45965398 -75292132 + B3A SINE B2 1 198 0 5 935 525 314 57 77 chr12 45965398 45965485 -75292045 + B4 SINE B4 221 292 0 5 935 2206 281 97 62 chr12 45965616 45966445 -75291085 + MTE-int LTR MaLR 660 1517 -63 5 935 395 281 2 40 chr12 45966468 45966675 -75290855 + L1VL4 LINE L1 4 330 -5972 5 935 1344 135 0 9 chr12 45966675 45966899 -75290631 + L1_Mus4 LINE L1 6413 6634 -2 6 935 789 268 52 82 chr12 45967010 45967278 -75290252 + MTEb LTR MaLR 120 379 0 6 935 1062 74 7 0 chr12 45967594 45967729 -75289801 + B1_Mus1 SINE Alu 1 136 -12 6 935 519 60 0 0 chr12 45967730 45967797 -75289733 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 6 935 237 98 0 0 chr12 45969900 45969941 -75287589 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 6 935 632 273 0 7 chr12 45969962 45970106 -75287424 - B3A SINE B2 -55 143 1 6 935 306 354 59 50 chr12 45972433 45972635 -75284895 + MIRb SINE MIR 47 250 -18 6 935 234 0 0 0 chr12 45972651 45972677 -75284853 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 6 935 831 307 14 24 chr12 45972833 45973123 -75284407 + B4A SINE B4 6 292 0 6 935 289 321 140 15 chr12 45973347 45973483 -75284047 + MIRb SINE MIR 84 236 -32 6 935 293 299 79 14 chr12 45974183 45974322 -75283208 + L1MC4 LINE L1 6769 6916 -1126 6 935 21 57 0 0 chr12 45974568 45974603 -75282927 + AT_rich Low_complexity Low_complexity 1 35 0 6 935 1390 207 113 8 chr12 45974624 45975003 -75282527 + MTD LTR MaLR 1 419 0 6 935 3106 197 146 17 chr12 45975183 45976020 -75281510 - Lx9 LINE L1 -6 7638 6694 6 935 1241 20 0 0 chr12 45976046 45976195 -75281335 + L1Md_A LINE L1 6434 6582 0 6 935 22 70 0 0 chr12 45977271 45977314 -75280216 + AT_rich Low_complexity Low_complexity 1 43 0 6 935 301 352 67 21 chr12 45977623 45977861 -75279669 - L2 LINE L2 -523 2896 2648 6 935 609 294 43 11 chr12 45978298 45978580 -75278950 + L1M4 LINE L1 4863 5153 -993 6 935 853 262 148 0 chr12 45978593 45978837 -75278693 - B4A SINE B4 0 292 13 6 935 241 260 25 25 chr12 45978767 45978846 -75278684 - ID4_ SINE ID 0 83 5 6 935 293 345 0 16 chr12 45978871 45978992 -75278538 + L2c LINE L2 3176 3294 -93 6 935 1632 301 48 61 chr12 45979227 45979847 -75277683 + RLTR18 LTR ERVK 5 616 0 6 935 6117 51 1 3 chr12 45980827 45981590 -75275940 - L1Md_F2 LINE L1 -2 6580 5819 6 935 412 161 67 1 chr12 45981590 45981668 -75275862 - MTEb LTR MaLR -6 373 290 6 935 7233 87 22 1 chr12 45985432 45986808 -75270722 + L1_Mus3 LINE L1 5238 6635 -3 6 935 443 146 38 86 chr12 45986932 45987023 -75270507 + B1_Mus2 SINE Alu 47 134 -13 6 935 261 0 0 0 chr12 45987023 45987052 -75270478 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 935 443 146 38 86 chr12 45987052 45987065 -75270465 + B1_Mus2 SINE Alu 135 146 -1 6 935 225 238 32 0 chr12 45987367 45987430 -75270100 + A-rich Low_complexity Low_complexity 6 70 0 6 935 360 0 0 0 chr12 45988188 45988228 -75269302 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 935 234 0 0 0 chr12 45988228 45988254 -75269276 + (CCA)n Simple_repeat Simple_repeat 1 26 0 6 935 396 298 112 0 chr12 45988384 45988566 -75268964 - MER58A DNA MER1_type -18 206 2 6 935 296 355 158 0 chr12 45988894 45989077 -75268453 - MIR SINE MIR -38 224 13 6 935 1349 289 52 33 chr12 45989556 45990099 -75267431 + Lx8 LINE L1 6101 6653 -820 6 935 1032 321 192 15 chr12 45990472 45991154 -75266376 - Lx8 LINE L1 -143 7330 6528 6 935 225 0 0 0 chr12 45991460 45991485 -75266045 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 935 207 0 0 0 chr12 45991485 45991507 -75266023 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 935 7744 3 0 0 chr12 45991549 45992452 -75265078 + L1Md_A LINE L1 4684 5586 -297 6 935 9078 2 0 0 chr12 45992452 45993448 -75264082 + L1Md_A LINE L1 5587 6582 0 6 935 612 231 127 10 chr12 45993841 45994038 -75263492 + Lx8 LINE L1 6265 6484 -989 6 935 212 162 0 0 chr12 45994162 45994199 -75263331 + T-rich Low_complexity Low_complexity 1 37 0 6 935 243 153 55 14 chr12 45994708 45994781 -75262749 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 935 976 217 20 5 chr12 45995580 45995784 -75261746 - B3 SINE B2 -9 207 1 6 935 249 33 0 0 chr12 45995814 45995844 -75261686 + (CAA)n Simple_repeat Simple_repeat 3 32 0 6 935 281 239 64 9 chr12 45996914 45997024 -75260506 + Lx9 LINE L1 5933 6048 -1596 6 935 212 220 20 0 chr12 45997189 45997239 -75260291 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 935 442 327 36 42 chr12 45997259 45997425 -75260105 - B4A SINE B4 -118 174 10 6 935 188 355 83 18 chr12 46000813 46000922 -75256608 - MIR3 SINE MIR -8 200 85 1 935 485 270 0 0 chr12 46002206 46002317 -75255213 + ORR1E LTR MaLR 1 111 -248 2 935 441 245 22 153 chr12 46002325 46002508 -75255022 + ORR1E LTR MaLR 205 379 0 2 935 395 209 275 0 chr12 46005150 46005241 -75252289 + B3A SINE B2 1 116 -82 3 935 387 73 0 0 chr12 46005273 46005328 -75252202 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 935 1216 163 28 9 chr12 46005686 46005752 -75251778 + URR1B DNA MER1_type 5 69 -156 5 935 3740 56 2 24 chr12 46005752 46006246 -75251284 + L1_Mus2 LINE L1 6084 6566 0 6 116 1216 163 28 9 chr12 46006246 46006396 -75251134 + URR1B DNA MER1_type 70 225 0 7 936 316 312 53 78 chr12 46006396 46006412 -75251118 - CYRA11_Mm Unknown Y-chromosome -292 325 156 8 936 423 0 0 0 chr12 46006434 46006481 -75251049 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 936 547 158 50 0 chr12 46006481 46006620 -75250910 + G-rich Low_complexity Low_complexity 4 149 0 1 936 577 293 39 29 chr12 46007574 46007778 -75249752 + Lx8 LINE L1 7122 7327 -146 1 936 279 54 0 0 chr12 46007793 46007830 -75249700 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 936 272 91 0 0 chr12 46007830 46007874 -75249656 + Lx8 LINE L1 7428 7471 -2 1 936 28 0 0 0 chr12 46007937 46007965 -75249565 + AT_rich Low_complexity Low_complexity 1 28 0 1 936 21 57 0 0 chr12 46008724 46008759 -75248771 + AT_rich Low_complexity Low_complexity 1 35 0 1 936 218 246 112 23 chr12 46009587 46009747 -75247783 - MIR SINE MIR -82 194 17 1 936 238 262 184 26 chr12 46009974 46010240 -75247290 - MER113 DNA MER1_type -73 448 141 1 936 471 18 0 0 chr12 46010571 46010627 -75246903 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 936 867 53 0 0 chr12 46010791 46010905 -75246625 - L1_Mus1 LINE L1 -535 6032 5919 1 936 3992 41 2 14 chr12 46010905 46011400 -75246130 + L1_Mus1 LINE L1 6079 6567 0 1 936 558 286 14 0 chr12 46011412 46011552 -75245978 + B1F1 SINE Alu 1 142 -7 2 936 252 143 0 0 chr12 46011557 46011599 -75245931 + (GGA)n Simple_repeat Simple_repeat 2 43 0 2 936 509 158 12 0 chr12 46011955 46012037 -75245493 - B1_Mur3 SINE Alu 0 149 67 2 936 22 0 0 0 chr12 46012155 46012177 -75245353 + AT_rich Low_complexity Low_complexity 1 22 0 2 936 202 194 0 0 chr12 46013339 46013375 -75244155 + (TGG)n Simple_repeat Simple_repeat 1 36 0 2 936 1506 202 50 57 chr12 46013825 46014208 -75243322 + ORR1C2 LTR MaLR 3 382 -2 2 936 182 37 0 36 chr12 46014491 46014519 -75243011 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 2 936 186 103 0 0 chr12 46015359 46015388 -75242142 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 2 936 1284 89 33 0 chr12 46015638 46015818 -75241712 + B2_Mm1t SINE B2 1 186 -7 2 936 252 280 0 0 chr12 46016197 46016272 -75241258 + L1M5 LINE L1 5587 5661 -512 2 936 486 33 0 0 chr12 46016274 46016334 -75241196 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 936 666 259 27 23 chr12 46016363 46016584 -75240946 - Tigger5 DNA MER2_type -49 2357 2136 3 936 324 257 106 5 chr12 46016719 46016907 -75240623 + L1M4 LINE L1 4379 4585 -1561 3 936 274 297 70 0 chr12 46016921 46017049 -75240481 + L1M4 LINE L1 4530 4666 -1480 3 936 2900 77 26 5 chr12 46017262 46017678 -75239852 - L1_Mus3 LINE L1 0 6638 6214 3 936 321 307 58 78 chr12 46018004 46018209 -75239321 - ORR1E LTR MaLR -60 299 99 3 936 1783 116 55 0 chr12 46018221 46018513 -75239017 + Lx3B LINE L1 6222 6529 -444 3 936 639 156 74 0 chr12 46018514 46018636 -75238894 + Lx3B LINE L1 6839 6969 -4 3 936 22 0 0 0 chr12 46018644 46018666 -75238864 + AT_rich Low_complexity Low_complexity 1 22 0 3 936 372 94 0 0 chr12 46018685 46018738 -75238792 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 936 22 0 0 0 chr12 46018817 46018839 -75238691 + AT_rich Low_complexity Low_complexity 1 22 0 3 936 199 122 25 63 chr12 46019513 46019592 -75237938 + (TTATA)n Simple_repeat Simple_repeat 2 77 0 3 936 893 295 98 39 chr12 46019809 46020165 -75237365 + MLT2B2 LTR ERVL 1 377 -138 4 936 720 89 0 0 chr12 46020188 46020289 -75237241 + (GA)n Simple_repeat Simple_repeat 1 101 0 4 936 186 43 0 0 chr12 46020567 46020590 -75236940 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 4 936 189 159 0 0 chr12 46020884 46020928 -75236602 + T-rich Low_complexity Low_complexity 1 44 0 4 936 1462 224 44 22 chr12 46021424 46021616 -75235914 - ORR1D1 LTR MaLR 0 374 173 4 936 207 0 0 0 chr12 46021616 46021639 -75235891 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 936 1462 224 44 22 chr12 46021639 46021811 -75235719 - ORR1D1 LTR MaLR -202 172 2 4 936 495 0 0 0 chr12 46022932 46022987 -75234543 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 4 936 483 326 53 0 chr12 46023619 46023751 -75233779 + RSINE1 SINE B4 3 141 -24 4 936 225 137 39 0 chr12 46024073 46024124 -75233406 + A-rich Low_complexity Low_complexity 1 53 0 4 936 2374 32 0 0 chr12 46024598 46024876 -75232654 + L1Md_A LINE L1 6305 6582 0 4 936 423 0 0 0 chr12 46025423 46025470 -75232060 + (TAG)n Simple_repeat Simple_repeat 3 49 0 5 936 243 0 0 0 chr12 46025470 46025497 -75232033 + (TTG)n Simple_repeat Simple_repeat 3 29 0 5 936 285 29 0 0 chr12 46025500 46025534 -75231996 + (CAG)n Simple_repeat Simple_repeat 2 35 0 5 936 2783 30 26 26 chr12 46025698 46026044 -75231486 + ORR1A0 LTR MaLR 1 346 0 5 936 250 319 14 0 chr12 46026289 46026361 -75231169 + ID_B1 SINE B4 116 188 -36 5 936 207 0 0 0 chr12 46026591 46026614 -75230916 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 936 636 324 95 58 chr12 46027956 46028227 -75229303 - MT2A LTR ERVL 0 533 245 5 936 291 93 0 0 chr12 46028227 46028270 -75229260 + (CACCAT)n Simple_repeat Simple_repeat 4 46 0 5 936 636 324 95 58 chr12 46028270 46028428 -75229102 - MT2A LTR ERVL -289 244 88 5 936 435 38 0 0 chr12 46029159 46029212 -75228318 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 936 249 33 0 0 chr12 46029213 46029243 -75228287 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 936 792 188 35 7 chr12 46031134 46031279 -75226251 - B1_Mur3 SINE Alu 0 149 1 6 936 1811 141 66 0 chr12 46031376 46031681 -75225849 + ORR1A2 LTR MaLR 3 327 0 6 936 2666 61 41 46 chr12 46033658 46034071 -75223459 + RLTR9F LTR ERVK 1 411 -4 6 936 270 0 0 0 chr12 46034627 46034657 -75222873 + (TTAGGG)n Simple_repeat Simple_repeat 5 34 0 6 936 436 272 28 56 chr12 46034812 46035100 -75222430 + Lx9 LINE L1 7361 7640 -4 6 936 2921 102 5 16 chr12 46035249 46035687 -75221843 + L1_Mus3 LINE L1 6206 6638 0 6 936 180 242 0 0 chr12 46036115 46036152 -75221378 + A-rich Low_complexity Low_complexity 1 37 0 6 936 549 0 0 0 chr12 46036152 46036213 -75221317 + (GGAAA)n Simple_repeat Simple_repeat 4 64 0 6 936 180 242 0 0 chr12 46036213 46036241 -75221289 + A-rich Low_complexity Low_complexity 38 65 0 6 936 339 200 130 0 chr12 46036533 46036633 -75220897 + L1MA4A LINE L1 5816 5928 -375 6 936 2173 43 21 7 chr12 46036807 46037088 -75220442 - L1Md_F3 LINE L1 0 6584 6300 7 936 23 33 0 0 chr12 46037188 46037218 -75220312 + AT_rich Low_complexity Low_complexity 1 30 0 7 936 197 132 0 26 chr12 46037885 46037924 -75219606 + CT-rich Low_complexity Low_complexity 2 39 0 7 936 188 86 0 28 chr12 46038212 46038248 -75219282 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 7 936 987 258 8 108 chr12 46038505 46038905 -75218625 + RMER17C LTR ERVK 1 360 -50 7 936 328 296 58 50 chr12 46039679 46039818 -75217712 - B1F SINE Alu -8 141 2 7 936 411 275 0 29 chr12 46042606 46042711 -75214819 + PB1D10 SINE Alu 10 111 -6 7 936 214 125 50 0 chr12 46042726 46042766 -75214764 + GA-rich Low_complexity Low_complexity 1 42 0 7 936 199 245 41 0 chr12 46043014 46043063 -75214467 + MIRb SINE MIR 215 265 -3 7 936 240 0 49 24 chr12 46043512 46043553 -75213977 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 7 936 367 291 0 0 chr12 46043554 46043633 -75213897 + B4 SINE B4 211 289 -3 8 936 762 276 29 5 chr12 46043739 46043943 -75213587 - B3 SINE B2 0 216 8 8 936 636 330 85 16 chr12 46043939 46044256 -75213274 - MER2 DNA MER2_type -6 339 1 8 936 2136 193 25 7 chr12 46045523 46045930 -75211600 + MTC LTR MaLR 1 414 -7 8 936 278 335 47 28 chr12 46045950 46046205 -75211325 + HAL1 LINE L1 145 404 -2103 8 936 22 0 0 0 chr12 46046906 46046928 -75210602 + AT_rich Low_complexity Low_complexity 1 22 0 8 936 234 191 0 0 chr12 46047441 46047488 -75210042 + GA-rich Low_complexity Low_complexity 2 48 0 8 936 426 353 80 13 chr12 46047605 46047829 -75209701 + HAL1 LINE L1 1338 1576 -931 8 936 1215 61 0 0 chr12 46048512 46048659 -75208871 + B1_Mus1 SINE Alu 1 147 -1 8 936 195 100 0 0 chr12 46048660 46048690 -75208840 + (A)n Simple_repeat Simple_repeat 1 30 0 8 936 212 77 0 25 chr12 46049482 46049522 -75208008 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 8 936 497 301 63 40 chr12 46050287 46050685 -75206845 + L1ME3 LINE L1 5727 6133 -29 9 936 1596 194 88 78 chr12 46050835 46051209 -75206321 + ORR1C1 LTR MaLR 1 378 0 9 936 234 62 0 0 chr12 46051432 46051464 -75206066 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 936 220 225 12 36 chr12 46052264 46052347 -75205183 + (TA)n Simple_repeat Simple_repeat 1 81 0 9 936 519 95 0 0 chr12 46052348 46052422 -75205108 + (TG)n Simple_repeat Simple_repeat 2 75 0 9 936 480 278 44 50 chr12 46052440 46052599 -75204931 - B3A SINE B2 -33 165 8 9 936 330 271 10 20 chr12 46053611 46053709 -75203821 + MLT1B LTR MaLR 65 161 -229 9 936 30 0 0 0 chr12 46053709 46053739 -75203791 + AT_rich Low_complexity Low_complexity 1 30 0 9 936 3518 42 2 0 chr12 46053756 46054203 -75203327 + L1Md_F3 LINE L1 6103 6550 -34 9 936 449 330 106 22 chr12 46054203 46054429 -75203101 + MLT1B LTR MaLR 144 388 -2 9 936 3262 181 129 8 chr12 46054570 46055293 -75202237 + RLTR40 LTR ERVK 1 810 -7 9 936 798 220 106 16 chr12 46055305 46055494 -75202036 - B3 SINE B2 -10 206 1 1 936 1107 82 0 7 chr12 46055555 46055702 -75201828 - B1_Mus2 SINE Alu 0 147 2 1 936 271 206 16 0 chr12 46058159 46058222 -75199308 + RMER1B Other Other 364 427 -639 1 936 2361 196 31 25 chr12 46058262 46058774 -75198756 + RMER1B Other Other 552 1066 0 1 936 1387 194 20 0 chr12 46058788 46059040 -75198490 + ORR1B2 LTR MaLR 17 273 -94 1 936 2193 112 19 0 chr12 46059047 46059368 -75198162 + ORR1A2 LTR MaLR 1 327 0 1 936 246 372 60 13 chr12 46059676 46059826 -75197704 + MIRc SINE MIR 40 196 -72 1 936 249 283 84 9 chr12 46060883 46060990 -75196540 + MER5C DNA MER1_type 196 310 -3 1 936 656 313 28 43 chr12 46062139 46062393 -75195137 - B4A SINE B4 0 292 43 1 936 481 292 34 14 chr12 46064537 46064683 -75192847 + MER5A1 DNA MER1_type 13 161 -5 1 936 1075 59 0 0 chr12 46064850 46064985 -75192545 + B1_Mus1 SINE Alu 1 135 -13 1 936 311 0 26 0 chr12 46064985 46065024 -75192506 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 936 1082 30 0 7 chr12 46065025 46065160 -75192370 + (GAGAA)n Simple_repeat Simple_repeat 5 138 0 1 936 675 252 0 0 chr12 46065323 46065470 -75192060 - B1_Mur1 SINE Alu -1 148 2 1 936 1577 54 0 0 chr12 46065820 46066023 -75191507 - L1Md_F3 LINE L1 -14 6570 6368 1 936 368 295 26 0 chr12 46066265 46066421 -75191109 + L1MB8 LINE L1 5004 5163 -983 1 936 287 176 14 56 chr12 46066458 46066530 -75191000 - B3 SINE B2 0 216 148 1 936 503 62 0 0 chr12 46066539 46066603 -75190927 + RLTR9B2 LTR ERVK 1 64 -356 1 936 515 335 73 57 chr12 46066889 46067206 -75190324 - MLT1D LTR MaLR -178 327 6 1 936 493 248 76 68 chr12 46067211 46067462 -75190068 + L1MB8 LINE L1 5738 5990 -188 1 936 36 23 0 0 chr12 46067650 46067693 -75189837 + AT_rich Low_complexity Low_complexity 1 43 0 1 936 183 184 0 0 chr12 46068204 46068242 -75189288 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 936 2342 49 0 0 chr12 46068823 46069111 -75188419 + L1Md_A LINE L1 6295 6582 0 1 936 2558 233 59 13 chr12 46069322 46069766 -75187764 + Lx5 LINE L1 5727 6208 -842 1 936 2308 117 3 0 chr12 46069766 46070092 -75187438 + ORR1A2 LTR MaLR 1 327 0 1 936 2558 244 51 11 chr12 46070092 46070384 -75187146 + Lx5 LINE L1 6209 6713 -747 1 936 1589 225 115 0 chr12 46070529 46070893 -75186637 - MTD LTR MaLR -9 410 5 1 936 458 279 74 70 chr12 46072147 46072390 -75185140 - Lx8 LINE L1 -5 7468 7225 1 936 230 298 35 12 chr12 46072422 46072507 -75185023 + MIRb SINE MIR 112 198 -70 1 936 456 19 0 0 chr12 46072969 46073022 -75184508 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 936 356 308 186 29 chr12 46073909 46074254 -75183276 - L1M5 LINE L1 -762 5384 4986 1 936 189 0 0 0 chr12 46074526 46074547 -75182983 + (A)n Simple_repeat Simple_repeat 1 21 0 1 936 437 261 19 19 chr12 46074676 46074804 -75182726 + ID_B1 SINE B4 89 225 -67 1 936 1779 191 71 8 chr12 46075280 46075633 -75181897 + ORR1C2 LTR MaLR 1 375 -9 1 936 213 94 0 0 chr12 46077244 46077276 -75180254 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 936 846 29 0 0 chr12 46077276 46077380 -75180150 + (GA)n Simple_repeat Simple_repeat 1 105 0 1 936 3400 98 16 10 chr12 46077413 46077907 -75179623 + Lx3_Mus LINE L1 6513 7009 0 1 936 472 200 146 0 chr12 46078040 46078150 -75179380 + Lx8 LINE L1 6336 6461 -1012 1 936 401 237 31 0 chr12 46078196 46078293 -75179237 - Lx8 LINE L1 -933 6540 6441 1 936 326 221 0 13 chr12 46078316 46078394 -75179136 - Lx8 LINE L1 -802 6671 6595 1 936 1571 285 108 38 chr12 46078408 46079151 -75178379 + Lx8 LINE L1 6679 7473 0 1 936 2931 284 91 16 chr12 46081800 46082949 -75174581 + Lx8 LINE L1 6214 7447 -26 1 936 222 37 0 0 chr12 46082980 46083007 -75174523 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 936 347 371 29 17 chr12 46084799 46084972 -75172558 + HAL1b LINE L1 1296 1470 -539 1 936 251 263 99 93 chr12 46085067 46085218 -75172312 - MTD LTR MaLR -7 412 212 1 936 22 56 0 0 chr12 46085980 46086016 -75171514 + AT_rich Low_complexity Low_complexity 1 36 0 1 936 336 267 61 8 chr12 46086369 46086501 -75171029 - Lx7 LINE L1 -346 7350 7212 1 936 279 368 0 19 chr12 46086539 46086647 -75170883 - Kanga1 DNA Tc2 -1611 134 29 1 936 502 84 0 0 chr12 46086662 46086733 -75170797 - L1Md_F2 LINE L1 -320 5563 5493 1 936 7707 64 4 2 chr12 46086743 46087735 -75169795 + L1Md_F2 LINE L1 5588 6581 -1 1 936 588 65 0 0 chr12 46087783 46087860 -75169670 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 1 936 416 331 8 8 chr12 46089818 46089940 -75167590 - B1F1 SINE Alu -27 122 1 1 936 239 295 22 122 chr12 46089940 46089955 -75167575 - MT2B2 LTR ERVL -306 276 154 1 936 24 0 0 0 chr12 46090839 46090863 -75166667 + AT_rich Low_complexity Low_complexity 1 24 0 1 936 625 273 24 24 chr12 46092989 46093158 -75164372 + B3A SINE B2 14 182 -16 1 936 220 214 35 35 chr12 46093241 46093299 -75164231 - MIR SINE MIR 0 262 205 1 936 289 231 86 25 chr12 46095290 46095460 -75162070 + L1ME3B LINE L1 5728 5908 -265 1 936 876 270 31 4 chr12 46095551 46095811 -75161719 - MER2 DNA MER2_type -5 340 74 1 936 2392 78 3 0 chr12 46096973 46097292 -75160238 + L1_Mus1 LINE L1 6248 6567 0 1 936 410 296 94 148 chr12 46097294 46097686 -75159844 - MLT1D LTR MaLR -48 457 87 1 936 258 302 44 6 chr12 46097686 46097866 -75159664 + L1M2 LINE L1 3036 3222 -2921 1 936 939 162 19 0 chr12 46097874 46098028 -75159502 + ORR1C1 LTR MaLR 222 378 0 1 936 4498 240 40 49 chr12 46098028 46099411 -75158119 + ORR1C1-int LTR MaLR 1 1370 0 1 936 1812 167 84 25 chr12 46099411 46099768 -75157762 + ORR1C1 LTR MaLR 1 378 0 1 936 1278 276 84 62 chr12 46099769 46100099 -75157431 + L1_Mur3 LINE L1 3864 4219 -1661 1 936 567 299 15 41 chr12 46100099 46100294 -75157236 + B3A SINE B2 4 193 -5 1 936 1278 276 84 62 chr12 46100294 46100823 -75156707 + L1_Mur3 LINE L1 4220 4742 -1138 1 936 1182 287 51 75 chr12 46101032 46101619 -75155911 + RLTR40 LTR ERVK 20 592 -225 1 936 202 215 36 60 chr12 46101895 46101979 -75155551 + L3b LINE CR1 179 260 -222 1 936 438 20 0 0 chr12 46102101 46102152 -75155378 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 936 242 264 56 0 chr12 46102418 46102490 -75155040 + AluF_3 SINE Alu 137 212 -99 1 936 581 260 232 19 chr12 46103114 46103440 -75154090 - MTE2a LTR MaLR -1 378 12 1 936 2070 134 67 6 chr12 46104561 46104907 -75152623 - ORR1B2 LTR MaLR 0 367 1 1 936 323 270 129 10 chr12 46105584 46105685 -75151845 - PB1D10 SINE Alu -4 113 1 1 936 423 0 0 0 chr12 46106669 46106716 -75150814 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 936 277 358 12 0 chr12 46107206 46107287 -75150243 + ID4 SINE ID 2 83 0 1 936 550 313 129 7 chr12 46107441 46107743 -75149787 + MER44A DNA MER2_type 1 339 0 1 936 1599 226 52 52 chr12 46108414 46108895 -75148635 - Lx7 LINE L1 -153 5727 5247 1 936 707 284 116 41 chr12 46108894 46109549 -75147981 + Lx7 LINE L1 5745 6506 -1190 1 936 471 311 99 11 chr12 46109542 46109724 -75147806 + Lx7 LINE L1 7086 7283 -190 1 936 340 202 59 119 chr12 46110117 46110235 -75147295 + MT2B LTR ERVL 154 264 -337 1 936 964 57 0 0 chr12 46110147 46110270 -75147260 + B1_Mm SINE Alu 25 147 0 1 936 661 23 11 11 chr12 46110295 46110383 -75147147 + (TTTC)n Simple_repeat Simple_repeat 3 90 0 1 936 378 0 0 0 chr12 46110869 46110911 -75146619 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 936 561 222 155 28 chr12 46111096 46111277 -75146253 - B3 SINE B2 -12 204 1 1 936 250 319 137 11 chr12 46111441 46111536 -75145994 + B1F SINE Alu 1 107 -42 1 936 252 0 0 0 chr12 46113055 46113083 -75144447 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 936 303 93 0 0 chr12 46113085 46113128 -75144402 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 936 207 351 104 29 chr12 46114636 46114809 -75142721 + MIRb SINE MIR 24 209 -59 1 936 365 349 85 0 chr12 46115217 46115406 -75142124 + MIR SINE MIR 3 207 -55 1 936 366 333 19 25 chr12 46116744 46116904 -75140626 - L1ME1 LINE L1 -314 5870 5712 1 936 747 225 7 7 chr12 46117043 46117182 -75140348 - B1_Mus2 SINE Alu -6 141 3 1 936 261 0 0 0 chr12 46118195 46118224 -75139306 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 936 550 307 44 15 chr12 46118916 46119121 -75138409 + B3 SINE B2 2 212 -4 1 936 510 61 0 0 chr12 46119132 46119198 -75138332 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 936 1158 47 0 7 chr12 46119366 46119516 -75138014 - L1Md_F2 LINE L1 0 6582 6434 1 936 21 57 0 0 chr12 46120109 46120144 -75137386 + AT_rich Low_complexity Low_complexity 1 35 0 1 936 226 173 0 19 chr12 46121488 46121541 -75135989 + T-rich Low_complexity Low_complexity 2 53 0 1 936 189 0 0 0 chr12 46121541 46121562 -75135968 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 936 688 299 53 49 chr12 46121718 46121964 -75135566 + B4 SINE B4 43 289 -3 1 936 205 218 0 18 chr12 46123343 46123399 -75134131 + A-rich Low_complexity Low_complexity 6 60 0 1 936 348 304 90 45 chr12 46124179 46124379 -75133151 + B4A SINE B4 84 292 0 1 936 249 159 0 0 chr12 46124702 46124746 -75132784 + (TAA)n Simple_repeat Simple_repeat 3 46 0 1 936 267 283 17 102 chr12 46125701 46125819 -75131711 - MIR SINE MIR -123 139 32 1 936 357 207 0 0 chr12 46128948 46129030 -75128500 + GA-rich Low_complexity Low_complexity 2 83 0 1 936 2373 168 103 8 chr12 46129159 46129634 -75127896 - RMER5 LTR ERV1 0 534 15 1 936 1637 180 40 101 chr12 46131068 46131464 -75126066 + RMER10B LTR ERVL 16 387 -11 1 936 2394 164 123 6 chr12 46131845 46132324 -75125206 + Lx4A LINE L1 6524 7058 0 1 936 31 26 0 0 chr12 46132324 46132362 -75125168 + AT_rich Low_complexity Low_complexity 1 38 0 1 936 188 204 22 22 chr12 46132480 46132525 -75125005 - MIRm SINE MIR -12 264 220 1 936 219 242 30 75 chr12 46132488 46132555 -75124975 - L2c LINE L2 -21 3366 3303 1 936 23 0 0 0 chr12 46133078 46133101 -75124429 + AT_rich Low_complexity Low_complexity 1 23 0 2 936 441 234 0 86 chr12 46134762 46134879 -75122651 - B1F SINE Alu -10 139 33 2 936 910 227 39 15 chr12 46135849 46136055 -75121475 + B3 SINE B2 2 212 -4 2 936 26 30 0 0 chr12 46136057 46136090 -75121440 + AT_rich Low_complexity Low_complexity 1 33 0 2 936 21 0 0 0 chr12 46136185 46136206 -75121324 + AT_rich Low_complexity Low_complexity 1 21 0 2 936 519 17 0 0 chr12 46136244 46136304 -75121226 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 936 212 188 125 0 chr12 46136567 46136615 -75120915 - MIR3 SINE MIR -52 156 103 2 936 227 186 14 28 chr12 46136625 46136697 -75120833 + (TTA)n Simple_repeat Simple_repeat 3 73 0 2 936 423 0 0 0 chr12 46136932 46136979 -75120551 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 937 1017 163 0 0 chr12 46137617 46137764 -75119766 - B1_Mur4 SINE Alu 0 150 4 2 937 338 275 25 0 chr12 46138920 46139000 -75118530 + MER21B LTR ERV1 129 210 -653 2 937 620 258 78 11 chr12 46139025 46139307 -75118223 - L1MCb LINE L1 -4848 1197 897 2 937 396 0 0 0 chr12 46139366 46139410 -75118120 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 937 1161 59 7 0 chr12 46139410 46139545 -75117985 - B1_Mm SINE Alu -10 137 2 2 937 480 173 12 0 chr12 46139753 46139834 -75117696 - 5S rRNA rRNA -31 90 9 2 937 255 125 0 0 chr12 46140374 46140414 -75117116 + (A)n Simple_repeat Simple_repeat 1 40 0 2 937 863 277 1 22 chr12 46141010 46141227 -75116303 + B3 SINE B2 1 193 -2 2 937 2525 154 62 5 chr12 46142490 46142939 -75114591 + Lx2B LINE L1 6524 6998 -2 2 937 5459 120 91 11 chr12 46143111 46143946 -75113584 + RMER17A2 LTR ERVK 1 902 -4 2 937 29 0 0 0 chr12 46145243 46145272 -75112258 + AT_rich Low_complexity Low_complexity 1 29 0 2 937 1018 125 7 0 chr12 46146282 46146426 -75111104 - B1_Mur4 SINE Alu -5 145 1 2 937 26 30 0 0 chr12 46146640 46146673 -75110857 + AT_rich Low_complexity Low_complexity 1 33 0 2 937 415 296 29 22 chr12 46146693 46146831 -75110699 + B1F1 SINE Alu 3 141 -8 2 937 311 313 11 2 chr12 46147102 46147215 -75110315 + PB1D7 SINE Alu 3 115 -5 2 937 181 128 43 0 chr12 46147605 46147652 -75109878 + (CAA)n Simple_repeat Simple_repeat 1 49 0 2 937 341 208 92 150 chr12 46147863 46148016 -75109514 - B1_Mur4 SINE Alu -6 144 1 2 937 597 64 0 0 chr12 46148094 46148172 -75109358 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 937 22 0 0 0 chr12 46149252 46149274 -75108256 + GC_rich Low_complexity Low_complexity 1 22 0 2 937 213 232 99 28 chr12 46149348 46149419 -75108111 + PB1D7 SINE Alu 45 120 0 2 937 205 204 0 22 chr12 46150056 46150101 -75107429 + CT-rich Low_complexity Low_complexity 3 46 0 2 937 207 333 13 26 chr12 46150246 46150323 -75107207 + MIR SINE MIR 23 98 -164 2 937 832 285 60 22 chr12 46151488 46151807 -75105723 + RMER5 LTR ERV1 33 363 -171 2 937 3522 38 5 0 chr12 46152048 46152442 -75105088 - MTA_Mm LTR MaLR 0 396 1 2 937 26 0 0 0 chr12 46152680 46152706 -75104824 + AT_rich Low_complexity Low_complexity 1 26 0 2 937 754 231 0 7 chr12 46152753 46152888 -75104642 - B1_Mur2 SINE Alu -10 139 6 2 937 545 273 83 50 chr12 46152958 46153139 -75104391 + B3A SINE B2 12 198 0 2 937 22 56 0 0 chr12 46153139 46153175 -75104355 + AT_rich Low_complexity Low_complexity 1 36 0 2 937 366 91 0 0 chr12 46153624 46153679 -75103851 + (CACCAT)n Simple_repeat Simple_repeat 4 58 0 2 937 204 211 0 0 chr12 46153931 46153969 -75103561 + T-rich Low_complexity Low_complexity 1 38 0 2 937 2556 195 34 27 chr12 46156176 46156703 -75100827 + MT2A LTR ERVL 3 533 0 2 937 332 329 148 46 chr12 46156887 46157104 -75100426 + MLT1K LTR MaLR 357 595 0 2 937 319 261 181 6 chr12 46157491 46157657 -75099873 + L2 LINE L2 2280 2474 -945 2 937 461 195 21 45 chr12 46158037 46158177 -75099353 + B3 SINE B2 56 186 -9 2 937 342 0 0 0 chr12 46158454 46158492 -75099038 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 937 293 308 90 0 chr12 46159795 46159928 -75097602 - MER46C DNA MER2_type -10 328 184 2 937 182 289 20 91 chr12 46160991 46161090 -75096440 - MIRb SINE MIR -72 196 105 2 937 439 236 75 0 chr12 46162101 46162207 -75095323 + B1_Mus1 SINE Alu 1 114 -34 2 937 407 316 18 0 chr12 46163198 46163312 -75094218 + PB1D10 SINE Alu 2 117 0 2 937 1427 82 11 16 chr12 46163573 46163760 -75093770 + B2_Mm1a SINE B2 1 186 -7 2 937 1974 167 110 11 chr12 46163898 46164042 -75093488 - MTC LTR MaLR -2 419 251 2 937 288 0 0 0 chr12 46164042 46164074 -75093456 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 2 937 1974 167 110 11 chr12 46164074 46164310 -75093220 - MTC LTR MaLR -171 250 1 2 937 5790 158 124 15 chr12 46164310 46165443 -75092087 - MTC-int LTR MaLR 0 1258 2 2 937 2451 148 74 5 chr12 46165443 46165836 -75091694 - MTC LTR MaLR 0 421 1 2 937 387 248 164 20 chr12 46165899 46166051 -75091479 + L1ME3B LINE L1 5693 5866 -374 2 937 736 259 97 19 chr12 46166078 46166397 -75091133 + L1MA8 LINE L1 5946 6289 -2 2 937 235 278 119 8 chr12 46168311 46168445 -75089085 - MIRm SINE MIR -107 169 21 2 937 334 296 22 29 chr12 46168463 46168599 -75088931 + MER5A1 DNA MER1_type 8 142 -24 2 937 414 205 130 43 chr12 46169181 46169319 -75088211 - L1MB5 LINE L1 -2 6176 6027 2 937 1049 261 156 41 chr12 46169357 46169961 -75087569 - L1MB5 LINE L1 -229 5945 5273 2 937 405 0 0 0 chr12 46170969 46171014 -75086516 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 2 937 1484 189 128 3 chr12 46172316 46172635 -75084895 - MTD LTR MaLR -15 404 46 2 937 309 330 26 18 chr12 46172936 46173050 -75084480 + MER5A DNA MER1_type 31 145 -44 2 937 229 227 36 107 chr12 46173182 46173266 -75084264 + MT2B2 LTR ERVL 185 262 -322 2 937 282 305 124 30 chr12 46175785 46175954 -75081576 - MER102b DNA MER1_type -2 339 155 2 937 468 249 98 84 chr12 46176392 46176607 -75080923 - MER96B DNA hAT -195 222 5 2 937 223 295 16 0 chr12 46177567 46177628 -75079902 + L2a LINE L2 3364 3425 -1 2 937 394 283 91 0 chr12 46178331 46178430 -75079100 + PB1D7 SINE Alu 5 112 -8 2 937 1105 163 64 52 chr12 46178602 46178835 -75078695 - Lx3C LINE L1 -2 6974 6739 2 937 3645 30 5 0 chr12 46179300 46179694 -75077836 + MTA_Mm LTR MaLR 1 396 0 2 937 237 196 0 0 chr12 46180053 46180104 -75077426 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 2 937 802 173 0 22 chr12 46180099 46180282 -75077248 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 937 1963 198 31 59 chr12 46181491 46181916 -75075614 + MTC LTR MaLR 1 413 -8 2 937 250 279 52 41 chr12 46181998 46182095 -75075435 + MTEa LTR MaLR 55 152 -227 2 937 244 254 28 0 chr12 46182105 46182176 -75075354 + Lx6 LINE L1 7377 7449 -11 2 937 598 339 0 6 chr12 46182181 46182350 -75075180 + MTEa LTR MaLR 164 331 -48 2 937 397 342 96 5 chr12 46182425 46182622 -75074908 + MIRb SINE MIR 22 236 -32 2 937 236 315 0 36 chr12 46183064 46183120 -75074410 - ID4 SINE ID -27 56 3 2 937 342 0 0 0 chr12 46183125 46183163 -75074367 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2 937 624 261 22 0 chr12 46183973 46184111 -75073419 + MER5A1 DNA MER1_type 26 166 0 2 937 220 231 215 0 chr12 46185337 46185402 -75072128 + PB1 SINE Alu 42 120 -7 2 937 347 272 36 54 chr12 46185681 46185848 -75071682 - RNLTR23 LTR ERVK 0 642 479 2 937 1351 107 6 11 chr12 46186560 46186740 -75070790 - B2_Mm1t SINE B2 -14 179 1 2 937 2915 55 6 11 chr12 46186859 46187207 -75070323 - ORR1A1 LTR MaLR 0 346 1 2 937 1241 54 0 13 chr12 46187777 46187926 -75069604 + B1_Mm SINE Alu 1 147 0 2 937 318 250 25 92 chr12 46188274 46188289 -75069241 + MT2B LTR ERVL 147 153 -448 2 937 639 260 0 0 chr12 46188289 46188416 -75069114 + B1F SINE Alu 1 127 -22 2 937 2299 291 102 11 chr12 46188717 46189437 -75068093 + Lx8 LINE L1 6189 6955 -518 2 937 4879 108 57 16 chr12 46189437 46190163 -75067367 + RMER6A LTR ERVK 2 756 0 2 937 2299 291 102 11 chr12 46190163 46190276 -75067254 + Lx8 LINE L1 6956 7098 -375 2 937 217 254 0 0 chr12 46190312 46190367 -75067163 + A-rich Low_complexity Low_complexity 1 55 0 2 937 470 17 0 17 chr12 46190442 46190502 -75067028 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 937 961 140 178 8 chr12 46190571 46190792 -75066738 + RLTR20B3 LTR ERVK 1 236 -324 2 937 2642 50 6 0 chr12 46190866 46191183 -75066347 - L1Md_F3 LINE L1 -144 6440 6122 2 937 828 43 69 0 chr12 46191183 46191299 -75066231 + L1Md_F3 LINE L1 6460 6583 -1 2 937 543 154 0 0 chr12 46192022 46192139 -75065391 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 937 264 305 63 69 chr12 46194013 46194307 -75063223 + L1_Mur3 LINE L1 2614 2928 -3215 2 937 239 258 16 0 chr12 46195526 46195588 -75061942 + L1M4 LINE L1 2961 3023 -3123 2 937 384 143 0 0 chr12 46195597 46195681 -75061849 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 937 393 261 109 0 chr12 46195682 46195820 -75061710 + L1_Mur3 LINE L1 3056 3208 -2672 2 937 960 257 30 49 chr12 46195812 46196078 -75061452 - Lx5 LINE L1 -48 7002 6742 2 937 265 315 37 0 chr12 46196126 46196234 -75061296 + L1M4 LINE L1 3805 3916 -2230 2 937 27 0 0 0 chr12 46196305 46196332 -75061198 + AT_rich Low_complexity Low_complexity 1 27 0 2 937 1088 177 22 26 chr12 46197243 46197475 -75060055 - LTRIS5 LTR ERV1 0 447 217 2 937 407 104 60 0 chr12 46197511 46197578 -75059952 - LTRIS5 LTR ERV1 -376 71 1 2 937 4978 157 144 10 chr12 46197831 46198804 -75058726 - RLTR25A LTR ERVK 0 1103 1 2 937 3482 173 67 112 chr12 46199044 46200015 -75057515 - RLTR19-int LTR ERVK -1756 4381 3455 2 937 1093 213 98 72 chr12 46200092 46200439 -75057091 - RLTR19-int LTR ERVK -2944 3193 2880 2 937 1746 172 30 56 chr12 46200448 46200951 -75056579 + RLTR41 LTR ERV1 1 438 -8 2 937 1652 229 56 90 chr12 46200957 46201514 -75056016 - RLTR19-int LTR ERVK -3261 2876 2339 2 937 780 156 11 34 chr12 46201509 46201688 -75055842 - RLTR19-int LTR ERVK -3399 2123 1949 2 937 1167 85 0 0 chr12 46201688 46201829 -75055701 + B1_Mus1 SINE Alu 1 141 -7 2 937 360 0 0 0 chr12 46201833 46201873 -75055657 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 937 402 258 41 10 chr12 46201874 46201972 -75055558 - URR1A DNA MER1_type -125 101 1 3 937 361 244 55 75 chr12 46202102 46202301 -75055229 - MTC-int LTR MaLR -72 1186 992 3 937 271 0 0 49 chr12 46202588 46202629 -75054901 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 937 2455 227 93 32 chr12 46202777 46203407 -75054123 + RMER6D LTR ERVK 1 677 -43 3 937 3334 78 2 0 chr12 46203407 46203806 -75053724 + MTB LTR MaLR 1 400 0 3 937 2455 227 93 32 chr12 46203806 46203854 -75053676 + RMER6D LTR ERVK 678 720 0 3 937 283 305 50 87 chr12 46203908 46204127 -75053403 - RLTR41 LTR ERV1 -45 401 191 3 937 1187 144 16 21 chr12 46204713 46204760 -75052770 - B2_Mm2 SINE B2 -4 191 147 3 937 213 39 0 0 chr12 46204760 46204786 -75052744 + (TATG)n Simple_repeat Simple_repeat 3 28 0 3 937 1187 144 16 21 chr12 46204786 46204930 -75052600 - B2_Mm2 SINE B2 -49 146 1 3 937 3431 134 8 0 chr12 46205851 46206342 -75051188 + Lx2 LINE L1 6502 6996 -1 3 937 1070 276 14 37 chr12 46206478 46206775 -75050755 + B4A SINE B4 1 290 -2 3 937 274 197 16 47 chr12 46206852 46206916 -75050614 + MTC LTR MaLR 1 62 -359 3 937 1045 212 160 4 chr12 46206923 46207179 -75050351 + RMER15 LTR ERVL 1 296 -279 3 937 384 236 31 41 chr12 46207452 46207549 -75049981 + PB1D9 SINE Alu 18 113 -7 3 937 287 391 43 55 chr12 46207613 46207940 -75049590 - L3 LINE CR1 -824 3665 3343 3 937 998 39 0 8 chr12 46208050 46208178 -75049352 + (TCTCC)n Simple_repeat Simple_repeat 2 128 0 3 937 336 102 0 0 chr12 46208178 46208227 -75049303 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 937 1235 54 0 33 chr12 46208243 46208395 -75049135 - B1_Mus2 SINE Alu 0 147 1 3 937 866 335 38 84 chr12 46208395 46208822 -75048708 - MLT1E2 LTR MaLR -1 626 220 3 937 280 155 14 14 chr12 46208845 46208917 -75048613 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 937 475 265 65 95 chr12 46208917 46209117 -75048413 - B4A SINE B4 0 292 99 3 937 238 211 158 0 chr12 46209095 46209152 -75048378 - MLT1E2 LTR MaLR -556 68 3 3 937 328 286 0 0 chr12 46209375 46209438 -75048092 + ID4_ SINE ID 7 69 -14 3 937 399 21 0 0 chr12 46209449 46209497 -75048033 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 937 2610 234 101 147 chr12 46210372 46211883 -75045647 + RMER1B Other Other 1 1066 0 3 937 180 0 0 0 chr12 46212436 46212456 -75045074 + (T)n Simple_repeat Simple_repeat 1 20 0 3 937 1177 82 0 0 chr12 46212456 46212602 -75044928 - B1_Mm SINE Alu 0 147 2 3 937 21 71 0 0 chr12 46212806 46212848 -75044682 + AT_rich Low_complexity Low_complexity 1 42 0 3 937 2409 217 71 96 chr12 46212850 46213801 -75043729 - RMER1B Other Other 0 1066 72 3 937 818 164 13 70 chr12 46213821 46213978 -75043552 - B1_Mus1 SINE Alu 0 148 1 3 937 319 322 84 8 chr12 46214704 46214863 -75042667 - MIR SINE MIR 0 276 100 3 937 1183 269 7 115 chr12 46214880 46215305 -75042225 + MTE2a LTR MaLR 1 379 0 3 937 296 362 76 15 chr12 46215439 46215571 -75041959 - Charlie7 DNA MER1_type -2307 305 166 3 937 516 277 33 16 chr12 46217239 46217360 -75040170 + RSINE1 SINE B4 3 125 -40 3 937 419 0 20 0 chr12 46217368 46217419 -75040111 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 937 21 0 0 0 chr12 46217420 46217441 -75040089 + AT_rich Low_complexity Low_complexity 1 21 0 3 937 258 183 14 14 chr12 46217646 46217718 -75039812 - Lx6 LINE L1 -26 7434 7363 3 937 824 224 0 11 chr12 46217722 46217912 -75039618 - L1_Mur3 LINE L1 -3570 2310 2130 3 937 186 103 0 0 chr12 46217925 46217954 -75039576 + (TGG)n Simple_repeat Simple_repeat 1 29 0 3 937 388 255 14 7 chr12 46217989 46218131 -75039399 - L1_Mur3 LINE L1 -6694 1034 892 3 937 390 309 56 35 chr12 46218263 46218461 -75039069 - MER3 DNA MER1_type -1 208 7 3 937 1020 40 0 0 chr12 46218723 46218848 -75038682 + (GGGAGA)n Simple_repeat Simple_repeat 2 126 0 3 937 742 238 25 12 chr12 46218848 46219010 -75038520 - ORR1D1 LTR MaLR -210 164 1 3 937 465 371 14 40 chr12 46219201 46219423 -75038107 + MLT1N2 LTR MaLR 49 264 -298 3 937 788 70 17 0 chr12 46219617 46219732 -75037798 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 3 937 292 343 120 18 chr12 46219922 46220139 -75037391 - MLT1H LTR MaLR -245 304 66 3 937 432 344 122 20 chr12 46220297 46220543 -75036987 - MLT1H-int LTR MaLR -186 1223 953 3 937 819 64 0 0 chr12 46220609 46220719 -75036811 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 3 937 1243 55 7 0 chr12 46220737 46220883 -75036647 - B1_Mus1 SINE Alu 0 148 2 3 937 195 69 0 0 chr12 46221035 46221064 -75036466 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 937 2158 267 28 7 chr12 46221070 46221610 -75035920 - Lx7 LINE L1 -281 7415 6865 3 937 226 264 75 0 chr12 46221616 46221669 -75035861 + L1ME3A LINE L1 6049 6105 -68 3 937 578 311 42 50 chr12 46222210 46222450 -75035080 + MLT1A0 LTR MaLR 16 253 -112 3 937 400 308 58 8 chr12 46222488 46222609 -75034921 - RSINE1 SINE B4 -33 132 6 3 937 352 301 18 0 chr12 46222611 46222724 -75034806 + MLT1A0 LTR MaLR 256 370 -4 3 937 2040 229 20 22 chr12 46223686 46224185 -75033345 + Lx7 LINE L1 6007 6504 -1192 3 937 231 227 0 0 chr12 46224198 46224242 -75033288 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 3 937 180 0 0 0 chr12 46224250 46224270 -75033260 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 937 372 22 0 0 chr12 46224467 46224512 -75033018 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 937 363 23 0 0 chr12 46224534 46224578 -75032952 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 937 532 292 13 45 chr12 46225125 46225279 -75032251 - B1_Mur2 SINE Alu 0 149 1 3 937 318 295 11 149 chr12 46225279 46225300 -75032230 - ID_B1 SINE B4 0 224 74 3 937 434 18 18 0 chr12 46225805 46225860 -75031670 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 937 217 70 70 0 chr12 46226003 46226046 -75031484 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 3 937 388 301 99 50 chr12 46227440 46227601 -75029929 - B3A SINE B2 0 198 30 3 937 909 0 0 0 chr12 46227741 46227842 -75029688 + (TTC)n Simple_repeat Simple_repeat 3 103 0 3 937 303 321 9 9 chr12 46228807 46228914 -75028616 + PB1D10 SINE Alu 4 110 -7 3 937 438 20 0 0 chr12 46229057 46229108 -75028422 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 937 5114 146 7 68 chr12 46229563 46230165 -75027365 - Lx2 LINE L1 -2 6995 6403 3 937 1244 119 11 21 chr12 46230165 46230353 -75027177 - B2_Mm2 SINE B2 -8 187 2 3 937 5114 146 7 68 chr12 46230353 46230691 -75026839 - Lx2 LINE L1 -595 6402 6112 3 937 246 81 0 0 chr12 46230731 46230768 -75026762 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 937 337 359 53 33 chr12 46232585 46232683 -75024847 + MER34 LTR ERV1 5 108 -463 3 937 297 0 0 0 chr12 46232683 46232716 -75024814 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 937 1035 82 0 0 chr12 46232716 46232851 -75024679 - B1_Mus2 SINE Alu -12 135 1 3 937 337 359 53 33 chr12 46232851 46232996 -75024534 + MER34 LTR ERV1 109 253 -318 3 937 265 326 0 34 chr12 46233013 46233102 -75024428 + Lx8 LINE L1 7151 7236 -237 3 937 686 310 34 6 chr12 46233149 46233355 -75024175 + B4A SINE B4 23 243 -49 3 937 390 273 9 9 chr12 46233516 46233627 -75023903 + MER34 LTR ERV1 430 540 -2 3 937 441 0 0 0 chr12 46234359 46234408 -75023122 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 937 339 136 0 0 chr12 46235486 46235545 -75021985 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 937 672 278 136 38 chr12 46235548 46235813 -75021717 - B4 SINE B4 0 292 2 3 937 651 237 14 0 chr12 46236053 46236064 -75021466 - B1_Mur2 SINE Alu 0 149 139 3 937 1244 60 6 0 chr12 46236064 46236230 -75021300 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 3 937 651 237 14 0 chr12 46236230 46236357 -75021173 - B1_Mur2 SINE Alu -11 138 10 3 937 1205 305 69 0 chr12 46236485 46237020 -75020510 + Lx9 LINE L1 6603 7174 -470 3 937 360 299 124 26 chr12 46237106 46237419 -75020111 - Arthur1C DNA Tip100 0 363 9 3 937 222 205 0 0 chr12 46237492 46237531 -75019999 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 937 270 298 62 6 chr12 46238556 46238718 -75018812 - CR1_Mam LINE CR1 -1425 779 609 3 937 249 376 50 50 chr12 46238808 46239029 -75018501 + MIRb SINE MIR 7 227 -41 3 937 390 269 0 36 chr12 46239237 46239349 -75018181 + PB1D10 SINE Alu 1 108 -9 3 937 492 106 0 0 chr12 46240565 46240650 -75016880 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 937 207 203 0 17 chr12 46240650 46240710 -75016820 + GA-rich Low_complexity Low_complexity 2 60 0 3 937 333 68 0 0 chr12 46242074 46242118 -75015412 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 937 534 57 0 0 chr12 46242118 46242187 -75015343 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 937 427 226 49 42 chr12 46242188 46242308 -75015222 - B1_Mur2 SINE Alu -23 124 1 3 937 264 292 97 43 chr12 46242226 46242319 -75015211 - B4 SINE B4 -125 167 70 3 937 24 0 0 0 chr12 46242409 46242433 -75015097 + AT_rich Low_complexity Low_complexity 1 24 0 3 937 279 79 0 0 chr12 46243208 46243246 -75014284 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 937 1611 268 73 42 chr12 46243270 46243941 -75013589 - Lx9 LINE L1 -212 7432 6741 3 937 3159 236 37 37 chr12 46243951 46245169 -75012361 - Lx9 LINE L1 -1493 6151 4884 3 937 7253 278 50 122 chr12 46247524 46249279 -75008251 - Lx5 LINE L1 -22 7028 5353 3 937 4505 60 3 0 chr12 46249279 46249847 -75007683 - L1_Mus1 LINE L1 0 6567 5998 3 937 7253 204 45 182 chr12 46249847 46249916 -75007614 - Lx5 LINE L1 -525 5352 5294 3 937 1154 82 0 0 chr12 46249916 46250062 -75007468 - B1_Mus2 SINE Alu 0 147 2 3 937 7253 204 45 182 chr12 46250062 46251080 -75006450 - Lx5 LINE L1 -584 5293 4214 3 937 265 24 23 23 chr12 46251080 46251123 -75006407 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 937 7253 204 45 182 chr12 46251123 46251400 -75006130 - Lx5 LINE L1 -1664 4213 3907 3 937 216 0 0 0 chr12 46251400 46251424 -75006106 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 937 7253 204 45 182 chr12 46251424 46251445 -75006085 - Lx5 LINE L1 -1971 3906 3889 3 937 1247 258 103 9 chr12 46251445 46251774 -75005756 - MTD LTR MaLR -57 362 3 3 937 7253 204 45 182 chr12 46251774 46252334 -75005196 - Lx5 LINE L1 -1989 3888 3401 3 937 389 236 0 0 chr12 46252334 46252406 -75005124 - BC1_Mm scRNA scRNA -75 77 6 3 937 7253 204 45 182 chr12 46252406 46252851 -75004679 - Lx5 LINE L1 -1971 3400 3010 3 937 7382 92 8 2 chr12 46252977 46254682 -75002848 - L1_Mus3 LINE L1 -1 6637 4923 3 937 1158 78 0 0 chr12 46254682 46254824 -75002706 + B1_Mus2 SINE Alu 1 142 -5 4 937 4885 200 7 48 chr12 46254824 46255100 -75002430 - L1_Mur3 LINE L1 -962 4918 4691 4 937 6331 129 15 9 chr12 46255101 46255270 -75002260 + L1_Mm LINE L1 3559 3728 -2155 4 937 3064 71 5 2 chr12 46255270 46255665 -75001865 - MTA_Mm LTR MaLR 0 396 1 4 937 6331 129 15 9 chr12 46255665 46256613 -75000917 + L1_Mm LINE L1 3729 4683 -1200 4 937 2222 120 3 3 chr12 46257222 46257540 -74999990 - ORR1A2 LTR MaLR -8 319 2 4 937 620 357 104 35 chr12 46257879 46258303 -74999227 + MLT1D LTR MaLR 1 453 -52 4 937 1129 275 59 3 chr12 46258305 46258662 -74998868 + Lx9 LINE L1 7089 7465 -179 4 937 1069 176 81 0 chr12 46258670 46258880 -74998650 - RLTR30 LTR ERV1 -2 377 151 4 937 225 171 24 0 chr12 46258890 46258931 -74998599 - RLTR30 LTR ERV1 -334 45 4 4 937 29 28 0 0 chr12 46259269 46259305 -74998225 + AT_rich Low_complexity Low_complexity 1 36 0 4 937 2072 84 7 0 chr12 46259500 46259818 -74997712 - L1Md_F2 LINE L1 0 6582 6291 4 937 214 384 75 6 chr12 46260847 46261007 -74996523 - MIRb SINE MIR -31 237 67 4 937 258 261 61 129 chr12 46261361 46261493 -74996037 + MER5B DNA MER1_type 20 142 -36 4 937 191 217 183 0 chr12 46261716 46261776 -74995754 + MER5B DNA MER1_type 108 178 0 4 937 184 326 99 71 chr12 46262135 46262346 -74995184 + MIRb SINE MIR 36 252 -16 4 937 4866 66 22 3 chr12 46262351 46262985 -74994545 + L1Md_F2 LINE L1 5937 6582 0 4 937 469 156 21 0 chr12 46263386 46263482 -74994048 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 937 769 229 26 98 chr12 46263536 46263730 -74993800 - B3 SINE B2 -15 180 1 4 937 270 279 0 12 chr12 46264275 46264355 -74993175 - MIRb SINE MIR -138 130 52 4 937 185 258 92 51 chr12 46264958 46265056 -74992474 + MIRb SINE MIR 94 195 -73 4 937 1007 299 26 16 chr12 46265058 46265371 -74992159 - MTE2b-int LTR MaLR -1262 318 3 4 937 881 273 84 1 chr12 46265376 46265687 -74991843 - MTE2b LTR MaLR -4 375 1 4 937 552 273 16 0 chr12 46266031 46266152 -74991378 + ORR1D2 LTR MaLR 2 124 -246 4 937 683 104 9 0 chr12 46266157 46266263 -74991267 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 4 937 714 285 25 0 chr12 46266503 46266703 -74990827 + ORR1E LTR MaLR 3 207 -152 4 937 460 232 68 145 chr12 46266717 46266924 -74990606 + MTE2b-int LTR MaLR 278 468 -1112 4 937 2350 279 146 22 chr12 46266966 46267791 -74989739 + MTE2b-int LTR MaLR 649 1575 -5 4 937 990 312 46 30 chr12 46267796 46268169 -74989361 + MTE2b LTR MaLR 1 379 0 4 938 547 306 139 45 chr12 46269164 46269523 -74988007 + MLT1C LTR MaLR 1 393 -74 4 938 1296 76 27 16 chr12 46269926 46270113 -74987417 - B2_Mm2 SINE B2 -5 190 2 4 938 402 195 0 0 chr12 46271291 46271378 -74986152 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 938 190 286 15 31 chr12 46271388 46271453 -74986077 + L3 LINE CR1 4052 4115 -374 4 938 2235 175 46 9 chr12 46271574 46272013 -74985517 + RMER6B LTR ERVK 1 455 -6 4 938 3394 38 2 0 chr12 46272129 46272524 -74985006 - MTA_Mm LTR MaLR 0 396 1 4 938 271 169 73 61 chr12 46272649 46272731 -74984799 + Tigger15a DNA TcMar 484 566 -149 4 938 421 345 70 56 chr12 46272997 46273283 -74984247 + MamGypLTR3 LTR Gypsy 433 722 -117 4 938 217 355 0 26 chr12 46273310 46273388 -74984142 + ID4 SINE ID 1 76 -7 4 938 767 156 239 26 chr12 46273390 46273620 -74983910 + Lx2 LINE L1 6719 6997 0 4 938 228 292 133 20 chr12 46273674 46273772 -74983758 + PB1D9 SINE Alu 11 119 -1 4 938 29 28 0 0 chr12 46274089 46274125 -74983405 + AT_rich Low_complexity Low_complexity 1 36 0 4 938 4402 72 2 12 chr12 46274125 46274700 -74982830 - L1_Mus1 LINE L1 0 6567 5999 4 938 642 96 0 0 chr12 46274700 46274794 -74982736 - L1_Mm LINE L1 -882 5001 4908 4 938 1248 68 0 0 chr12 46274791 46274954 -74982576 + L1_Mm LINE L1 5435 5597 -286 4 938 840 65 0 24 chr12 46274959 46275086 -74982444 + L1Md_F2 LINE L1 6447 6570 -12 4 938 312 91 0 0 chr12 46275113 46275157 -74982373 + (A)n Simple_repeat Simple_repeat 1 44 0 4 938 8187 99 5 0 chr12 46275161 46276399 -74981131 - L1_Mm LINE L1 -1071 4812 3569 4 938 5569 71 4 4 chr12 46276573 46277426 -74980104 - L1_Mus3 LINE L1 0 6638 5885 4 938 249 258 75 11 chr12 46277736 46277830 -74979700 + MER5A1 DNA MER1_type 15 114 -52 4 938 186 297 151 56 chr12 46278427 46278659 -74978871 - L3 LINE CR1 -213 4276 4023 4 938 355 273 19 57 chr12 46279268 46279427 -74978103 + RSINE1 SINE B4 3 155 -10 4 938 308 219 64 28 chr12 46279739 46279880 -74977650 + Lx9 LINE L1 7489 7634 -10 4 938 1132 145 65 33 chr12 46279881 46280095 -74977435 - URR1B DNA MER1_type 0 225 5 4 938 197 316 31 21 chr12 46280449 46280546 -74976984 - L3 LINE CR1 -4389 100 3 4 938 419 239 137 33 chr12 46281540 46281752 -74975778 + L1MA8 LINE L1 6032 6265 -26 4 938 588 270 58 26 chr12 46281909 46282065 -74975465 - RSINE1 SINE B4 -2 163 3 4 938 197 274 65 0 chr12 46282098 46282160 -74975370 - L2a LINE L2 0 3426 3361 4 938 38 39 0 0 chr12 46282619 46282671 -74974859 + AT_rich Low_complexity Low_complexity 1 52 0 4 938 229 277 48 0 chr12 46282993 46283076 -74974454 - LTR41 LTR ERVL -11 757 671 4 938 570 41 0 0 chr12 46283248 46283321 -74974209 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 938 280 208 93 111 chr12 46283351 46283459 -74974071 - MLT1B LTR MaLR -9 496 391 4 938 401 310 47 71 chr12 46283521 46283733 -74973797 - MLT1B LTR MaLR -139 251 45 4 938 253 158 105 0 chr12 46283771 46283828 -74973702 + MER58B DNA MER1_type 120 182 -159 4 938 727 275 30 10 chr12 46283866 46284068 -74973462 + ID_B1 SINE B4 1 206 -18 4 938 611 26 0 13 chr12 46284068 46284146 -74973384 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 4 938 1070 255 83 98 chr12 46284189 46284971 -74972559 + RMER17B LTR ERVK 2 851 -57 4 938 836 46 9 0 chr12 46285210 46285319 -74972211 + (TTCTC)n Simple_repeat Simple_repeat 3 112 0 4 938 270 0 0 0 chr12 46285322 46285352 -74972178 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 938 946 246 141 44 chr12 46285487 46285899 -74971631 + Lx8 LINE L1 7018 7469 -4 4 938 271 322 93 44 chr12 46286089 46286271 -74971259 - MT2A LTR ERVL 0 533 343 4 938 816 334 82 38 chr12 46286265 46286682 -74970848 - MT2A LTR ERVL -98 435 1 4 938 399 21 0 0 chr12 46286760 46286808 -74970722 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 938 1008 86 0 0 chr12 46286808 46286947 -74970583 + (GA)n Simple_repeat Simple_repeat 1 140 0 4 938 186 43 0 0 chr12 46287882 46287905 -74969625 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 938 462 203 0 0 chr12 46288968 46289091 -74968439 + (CA)n Simple_repeat Simple_repeat 1 123 0 4 938 390 205 12 0 chr12 46289531 46289614 -74967916 + Lx6 LINE L1 6722 6805 -655 4 938 1173 174 93 19 chr12 46289618 46289876 -74967654 + Lx6 LINE L1 6462 6738 -722 4 938 1575 258 6 16 chr12 46289874 46290237 -74967293 + Lx6 LINE L1 6926 7284 -176 4 938 26 0 0 0 chr12 46290237 46290263 -74967267 + AT_rich Low_complexity Low_complexity 1 26 0 4 938 779 245 73 0 chr12 46290815 46291007 -74966523 + B3 SINE B2 1 206 -10 4 938 808 167 0 22 chr12 46291008 46291192 -74966338 + GA-rich Low_complexity Low_complexity 1 180 0 4 938 425 310 34 8 chr12 46291780 46291897 -74965633 + B1F SINE Alu 9 128 -21 4 938 212 175 25 0 chr12 46292488 46292528 -74965002 + CT-rich Low_complexity Low_complexity 2 42 0 4 938 342 123 0 0 chr12 46292529 46292586 -74964944 + (TATG)n Simple_repeat Simple_repeat 2 58 0 4 938 741 222 39 4 chr12 46293051 46293316 -74964214 + Lx5 LINE L1 914 1181 -6547 4 938 1086 186 59 12 chr12 46293304 46293560 -74963970 + Lx5 LINE L1 2576 2843 -3034 4 938 458 154 2 12 chr12 46293563 46293698 -74963832 - RLTR1B-int LTR ERV1 0 3299 3231 4 938 3528 102 9 33 chr12 46293691 46294260 -74963270 - MMVL30-int LTR ERV1 -69 3629 3075 4 938 558 313 8 4 chr12 46294264 46294508 -74963022 - MMVL30-int LTR ERV1 -3199 4579 4335 4 938 4747 138 41 19 chr12 46294542 46295520 -74962010 - MMVL30-int LTR ERV1 -2442 2621 1500 4 938 302 171 29 0 chr12 46295587 46295657 -74961873 - MMVL30-int LTR ERV1 -2187 1511 1440 4 938 719 131 53 188 chr12 46295630 46295875 -74961655 - MMVL30-int LTR ERV1 -2139 1160 949 4 938 1990 86 14 10 chr12 46295956 46296251 -74961279 - MMVL30-int LTR ERV1 -2245 1453 1158 4 938 198 0 0 0 chr12 46296424 46296446 -74961084 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 4 938 436 238 29 44 chr12 46296532 46296668 -74960862 + LSU-rRNA_Hsa rRNA rRNA 3177 3310 -1725 4 938 923 178 183 68 chr12 46297025 46297568 -74959962 - MMVL30-int LTR ERV1 -6933 623 1 4 938 768 252 72 59 chr12 46297568 46297931 -74959599 - RLTR1B LTR ERV1 0 624 62 4 938 3510 187 51 15 chr12 46297939 46298828 -74958702 + Lx5 LINE L1 2819 3739 -2138 4 938 29652 95 17 2 chr12 46298825 46304147 -74953383 + L1Md_F2 LINE L1 184 5586 -297 4 938 7297 82 1 5 chr12 46304148 46305135 -74952395 + L1Md_F2 LINE L1 5588 6570 -12 4 938 24 32 0 0 chr12 46305164 46305195 -74952335 + AT_rich Low_complexity Low_complexity 1 31 0 4 938 10216 172 35 16 chr12 46305206 46305356 -74952174 + Lx5 LINE L1 3718 3859 -2018 4 938 513 32 0 0 chr12 46305356 46305419 -74952111 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 938 10216 172 34 15 chr12 46305419 46307538 -74949992 + Lx5 LINE L1 3860 6031 -1019 4 938 6205 200 64 10 chr12 46307542 46309159 -74948371 + L1_Mur3 LINE L1 2137 3841 -2039 4 938 1674 269 38 28 chr12 46309160 46309661 -74947869 - RMER20A LTR ERVK -1 515 10 4 938 3615 189 18 0 chr12 46309666 46310456 -74947074 + L1_Mur3 LINE L1 3835 4638 -1242 4 938 321 74 58 14 chr12 46310456 46310525 -74947005 + (CAAAA)n Simple_repeat Simple_repeat 4 75 0 4 938 465 146 68 0 chr12 46310536 46310639 -74946891 + L1_Mur3 LINE L1 4623 4732 -1148 4 938 363 292 210 23 chr12 46311535 46311749 -74945781 - MER2 DNA MER2_type -5 340 87 4 938 671 324 120 21 chr12 46312545 46312879 -74944651 - MLT1A LTR MaLR -7 367 1 4 938 26 50 0 0 chr12 46313834 46313874 -74943656 + AT_rich Low_complexity Low_complexity 1 40 0 4 938 429 70 0 0 chr12 46314026 46314083 -74943447 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 938 6367 241 58 32 chr12 46314597 46314749 -74942781 - Lx9 LINE L1 0 7644 7488 4 938 348 127 0 0 chr12 46314749 46314804 -74942726 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 938 6367 241 58 32 chr12 46314804 46314880 -74942650 - Lx9 LINE L1 -157 7487 7402 4 938 405 0 0 0 chr12 46314880 46314925 -74942605 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 938 6367 236 50 32 chr12 46314925 46316997 -74940533 - Lx9 LINE L1 -243 7401 5262 4 938 6878 85 8 9 chr12 46316999 46318161 -74939369 - L1Md_F2 LINE L1 0 6582 5425 4 938 3656 14 2 0 chr12 46318161 46318590 -74938940 - MT2_Mm LTR ERVL 0 493 64 4 938 23972 109 15 17 chr12 46318592 46323209 -74934321 - L1Md_F2 LINE L1 -934 4949 360 4 938 452 68 0 14 chr12 46323224 46323298 -74934232 + (TCTTG)n Simple_repeat Simple_repeat 2 74 0 4 938 204 40 0 0 chr12 46323298 46323323 -74934207 + (TTCCC)n Simple_repeat Simple_repeat 4 28 0 4 938 6520 76 27 7 chr12 46323349 46324248 -74933282 - Lx3_Mus LINE L1 -13 6996 6080 4 938 1612 110 86 0 chr12 46324255 46324547 -74932983 + L1_Mur1 LINE L1 5236 5552 -334 5 938 3091 71 5 5 chr12 46324559 46324970 -74932560 - L1Md_F2 LINE L1 -19 6563 6153 5 938 3372 137 19 66 chr12 46324970 46325372 -74932158 - L1Md_A LINE L1 -5310 1328 956 5 938 6601 37 15 2 chr12 46325372 46326181 -74931349 - L1Md_F2 LINE L1 0 6582 5764 5 938 3372 203 10 21 chr12 46326181 46326728 -74930802 - L1Md_A LINE L1 -5745 979 409 5 938 2574 84 15 56 chr12 46326728 46327192 -74930338 + Lx3_Mus LINE L1 5542 5982 -1027 5 938 571 190 84 0 chr12 46327203 46327345 -74930185 - L1_Rod LINE L1 -1499 4348 4195 5 938 1012 318 11 7 chr12 46327533 46327802 -74929728 + MTEa LTR MaLR 107 376 -3 5 938 374 161 28 139 chr12 46327845 46327875 -74929655 - HAL1-3A_ME LINE L1 -787 2071 2043 5 938 2251 75 0 3 chr12 46327875 46328169 -74929361 + L1_Mus2 LINE L1 6274 6566 0 5 938 374 161 28 139 chr12 46328169 46328246 -74929284 - HAL1-3A_ME LINE L1 -816 2042 1977 5 938 211 204 0 0 chr12 46328246 46328290 -74929240 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 938 492 317 90 61 chr12 46328295 46328574 -74928956 - B4 SINE B4 -2 290 4 5 938 21 89 0 0 chr12 46328822 46328878 -74928652 + AT_rich Low_complexity Low_complexity 1 56 0 5 938 557 255 25 6 chr12 46330075 46330233 -74927297 + MER67D LTR ERV1 1 161 -353 5 938 1086 264 14 14 chr12 46330261 46330545 -74926985 + Lx7 LINE L1 6476 6759 -937 5 938 2288 208 70 24 chr12 46330932 46331528 -74926002 + Lx7 LINE L1 6792 7415 -281 5 938 927 92 0 0 chr12 46331616 46331747 -74925783 + (GA)n Simple_repeat Simple_repeat 2 132 0 5 938 244 182 18 0 chr12 46331796 46331851 -74925679 + Lx7 LINE L1 7641 7696 0 5 938 555 219 39 58 chr12 46331905 46332060 -74925470 - Lx7 LINE L1 -370 7326 7175 5 938 526 303 105 0 chr12 46333334 46333697 -74923833 - L1M4 LINE L1 -2246 3900 3500 5 938 1912 152 13 107 chr12 46333721 46334103 -74923427 + ORR1B1 LTR MaLR 41 386 -8 5 938 376 304 126 26 chr12 46334119 46334349 -74923181 - Lx8 LINE L1 -5 7468 7216 5 938 216 105 0 0 chr12 46334409 46334440 -74923090 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 5 938 1235 89 0 6 chr12 46334440 46334620 -74922910 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 5 938 216 105 0 0 chr12 46334620 46334626 -74922904 + (TTTTC)n Simple_repeat Simple_repeat 3 8 0 5 938 6583 112 15 6 chr12 46334667 46335905 -74921625 - L1_Mus3 LINE L1 -6 6632 5376 5 938 15485 142 10 34 chr12 46335905 46339455 -74918075 - L1_Mus3 LINE L1 -1807 4076 613 5 938 330 312 119 0 chr12 46339790 46339899 -74917631 - LTR33A LTR ERVL -378 142 21 5 938 839 260 191 15 chr12 46340936 46341475 -74916055 - L1MC3 LINE L1 -10 7775 7142 5 938 669 255 119 10 chr12 46341482 46341775 -74915755 + L1MA5 LINE L1 5606 5930 -370 5 938 435 291 73 5 chr12 46341805 46342084 -74915446 + L1MA5 LINE L1 6005 6300 0 5 938 351 0 0 0 chr12 46343025 46343064 -74914466 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 938 2009 238 87 31 chr12 46343228 46343960 -74913570 + Lx9 LINE L1 6841 7613 -31 5 938 399 319 21 0 chr12 46344280 46344374 -74913156 - B1F1 SINE Alu -51 98 3 5 938 352 313 29 29 chr12 46344431 46344533 -74912997 + B1F1 SINE Alu 10 111 -38 5 938 243 0 0 0 chr12 46344587 46344614 -74912916 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5 938 240 167 0 0 chr12 46345080 46345128 -74912402 + T-rich Low_complexity Low_complexity 3 50 0 5 938 1052 106 0 0 chr12 46345128 46345270 -74912260 - B1_Mus2 SINE Alu 0 147 6 5 938 360 0 0 0 chr12 46345292 46345332 -74912198 + (TTA)n Simple_repeat Simple_repeat 1 40 0 5 938 411 19 0 0 chr12 46345332 46345384 -74912146 - L1Md_F2 LINE L1 -23 6559 6508 5 938 1851 57 0 0 chr12 46345378 46345624 -74911906 + L1Md_F2 LINE L1 5920 6165 -417 5 938 185 0 40 0 chr12 46345694 46345719 -74911811 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 5 938 257 261 63 74 chr12 46346190 46346285 -74911245 - MER20 DNA MER1_type -1 218 125 5 938 6128 96 12 4 chr12 46347848 46349462 -74908068 + L1VL4 LINE L1 219 1844 -1715 5 938 5573 132 96 0 chr12 46349461 46350747 -74906783 + Lx2 LINE L1 5243 6645 -352 5 938 1129 146 26 0 chr12 46350745 46350937 -74906593 + Lx2 LINE L1 6775 6971 -26 5 938 2279 66 0 22 chr12 46350938 46351261 -74906269 + L1_Mus1 LINE L1 6252 6567 0 5 938 1270 134 4 13 chr12 46351285 46351511 -74906019 - Lx2 LINE L1 -651 6349 6126 5 938 810 0 0 0 chr12 46351537 46351627 -74905903 + (TTC)n Simple_repeat Simple_repeat 2 91 0 5 938 1223 41 0 14 chr12 46351652 46351800 -74905730 - B1_Mus2 SINE Alu -1 146 1 5 938 7443 30 0 3 chr12 46351832 46352752 -74904778 - L1Md_F3 LINE L1 -3 6581 5665 5 938 6182 38 1 0 chr12 46352749 46353535 -74903995 + L1Md_F3 LINE L1 4735 5521 -362 5 938 2581 159 72 9 chr12 46353534 46354207 -74903323 - Lx2 LINE L1 -875 6122 5396 5 938 234 260 226 20 chr12 46354854 46354956 -74902574 - MT2A LTR ERVL -5 528 406 5 938 375 83 0 0 chr12 46354959 46355019 -74902511 + (T)n Simple_repeat Simple_repeat 1 60 0 5 938 1213 298 25 47 chr12 46355021 46355429 -74902101 - MT2A LTR ERVL -134 399 1 5 938 1515 201 41 0 chr12 46355575 46355894 -74901636 + RMER1B Other Other 581 912 -154 5 938 1104 267 39 44 chr12 46356174 46356558 -74900972 + RMER1C Other Other 675 1056 -286 5 938 882 95 0 0 chr12 46356695 46356843 -74900687 + (CAAAG)n Simple_repeat Simple_repeat 2 149 0 5 938 3263 250 45 32 chr12 46356970 46358549 -74898981 + RMER1A Other Other 1 870 -160 5 938 581 0 0 14 chr12 46358549 46358619 -74898911 + (TTTAG)n Simple_repeat Simple_repeat 3 71 0 5 938 3263 187 78 17 chr12 46358619 46358737 -74898793 + RMER1A Other Other 871 1019 -11 5 938 1550 164 17 23 chr12 46358749 46359049 -74898481 + RMER1C Other Other 1045 1342 0 5 938 1579 221 68 21 chr12 46359069 46359407 -74898123 - ORR1D2 LTR MaLR -13 357 4 5 938 510 276 90 19 chr12 46360682 46360837 -74896693 + B4A SINE B4 123 288 -4 5 938 295 384 0 0 chr12 46360842 46360975 -74896555 + (CA)n Simple_repeat Simple_repeat 2 134 0 5 938 1231 102 50 23 chr12 46361193 46361376 -74896154 + L1Md_F2 LINE L1 6357 6537 -45 5 938 4486 23 17 4 chr12 46361376 46361908 -74895622 + L1Md_F3 LINE L1 6046 6584 0 5 938 1231 102 50 23 chr12 46361908 46361944 -74895586 + L1Md_F2 LINE L1 6538 6582 0 5 938 6098 149 11 10 chr12 46361998 46363399 -74894131 - Lx LINE L1 -6 6648 5248 5 938 22 35 0 0 chr12 46364538 46364567 -74892963 + AT_rich Low_complexity Low_complexity 1 29 0 5 938 297 0 0 0 chr12 46365479 46365512 -74892018 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 938 199 282 70 12 chr12 46368886 46368972 -74888558 - MIRc SINE MIR -54 214 124 5 938 823 195 65 5 chr12 46370343 46370559 -74886971 - L1_Mur3 LINE L1 -535 5345 5117 5 938 7800 144 16 11 chr12 46370573 46371476 -74886054 - Lx2B LINE L1 -4 6996 6085 5 938 3121 75 12 5 chr12 46371476 46371894 -74885636 - BGLII LTR ERVK 0 421 1 5 938 7800 144 16 11 chr12 46371894 46372367 -74885163 - Lx2B LINE L1 -916 6084 5613 5 938 1601 117 11 7 chr12 46372350 46372633 -74884897 - MusHAL1 LINE L1 -2084 628 345 5 938 256 179 0 0 chr12 46372848 46372904 -74884626 - Lx2B LINE L1 -6233 751 696 5 938 4013 209 47 12 chr12 46372956 46373995 -74883535 - L1_Mur3 LINE L1 -752 5128 4054 5 938 7461 196 46 146 chr12 46373996 46374077 -74883453 + L1_Mur3 LINE L1 1359 1431 -4449 5 938 848 82 0 8 chr12 46374077 46374200 -74883330 + (GAA)n Simple_repeat Simple_repeat 2 123 0 5 938 7461 196 46 146 chr12 46374200 46374756 -74882774 + L1_Mur3 LINE L1 1432 2004 -3876 5 938 1149 76 7 0 chr12 46374756 46374901 -74882629 + B1_Mus2 SINE Alu 2 147 0 5 938 7461 196 46 146 chr12 46374901 46374958 -74882572 + L1_Mur3 LINE L1 2005 2069 -3811 5 938 468 0 0 0 chr12 46374958 46375010 -74882520 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 938 477 34 0 0 chr12 46375018 46375077 -74882453 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 938 7461 196 46 146 chr12 46375077 46376692 -74880838 + L1_Mur3 LINE L1 2072 3470 -2410 5 938 390 42 0 0 chr12 46376692 46376740 -74880790 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 938 7461 196 46 146 chr12 46376740 46377096 -74880434 + L1_Mur3 LINE L1 3471 3734 -2146 5 938 234 0 0 0 chr12 46377096 46377122 -74880408 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 938 7461 196 46 146 chr12 46377122 46377432 -74880098 + L1_Mur3 LINE L1 3735 4048 -1832 5 938 1170 242 106 78 chr12 46377923 46378384 -74879146 + RLTR28B LTR ERVL 6 479 -2 5 938 452 375 62 10 chr12 46378461 46378765 -74878765 - Lx8 LINE L1 -375 7098 6779 5 938 300 172 0 0 chr12 46378975 46379033 -74878497 + CT-rich Low_complexity Low_complexity 4 61 0 5 938 233 184 0 0 chr12 46379035 46379073 -74878457 + polypyrimidine Low_complexity Low_complexity 4 41 0 5 938 469 280 96 0 chr12 46379773 46379898 -74877632 - B1F SINE Alu -1 148 12 5 938 692 234 78 26 chr12 46380190 46380383 -74877147 - Lx5 LINE L1 0 7050 6848 5 938 831 227 37 15 chr12 46380374 46380647 -74876883 + Lx5 LINE L1 5968 6246 -804 5 938 1118 100 0 6 chr12 46380887 46381068 -74876462 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 938 2137 299 84 22 chr12 46381088 46381893 -74875637 - Lx6 LINE L1 -27 7433 6579 5 938 801 0 0 0 chr12 46381896 46381985 -74875545 + (TTC)n Simple_repeat Simple_repeat 2 90 0 5 938 270 269 0 15 chr12 46382202 46382270 -74875260 - Lx8 LINE L1 -297 7176 7110 5 938 872 104 30 18 chr12 46382298 46382464 -74875066 - L1_Mus3 LINE L1 -6 6632 6465 5 938 1142 51 57 6 chr12 46382465 46382623 -74874907 + L1_Mus3 LINE L1 6315 6480 -158 5 938 633 255 61 50 chr12 46382600 46382798 -74874732 - Lx8 LINE L1 -344 7129 6930 5 938 1563 174 119 28 chr12 46382810 46383171 -74874359 - ORR1B1 LTR MaLR 0 394 1 5 938 3433 200 38 104 chr12 46383171 46384173 -74873357 - ORR1B1-int LTR MaLR 0 1509 672 5 938 501 257 0 190 chr12 46383963 46384217 -74873313 - MT2B LTR ERVL -332 269 67 5 938 3102 205 31 38 chr12 46384217 46385134 -74872396 + RLTR25B LTR ERVK 1 909 -194 5 938 279 0 0 0 chr12 46385134 46385165 -74872365 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 938 2927 263 64 67 chr12 46385165 46385353 -74872177 + RLTR25B LTR ERVK 910 1103 0 5 938 355 191 0 42 chr12 46385353 46385424 -74872106 - MT2B LTR ERVL -533 68 1 5 938 272 98 0 0 chr12 46385425 46385466 -74872064 - MERVL_2A-int LTR ERVL -2 5759 5719 5 938 2678 187 20 124 chr12 46385466 46386174 -74871356 - ORR1B1-int LTR MaLR -1323 640 7 5 938 1257 184 30 17 chr12 46386174 46386407 -74871123 - ORR1B1 LTR MaLR 0 394 159 5 938 450 75 0 0 chr12 46386407 46386474 -74871056 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 938 1049 216 7 78 chr12 46386474 46386511 -74871019 - ORR1B1 LTR MaLR -218 109 76 5 938 1991 271 39 5 chr12 46386511 46387078 -74870452 - Lx8 LINE L1 -663 6810 6225 5 938 21 57 0 0 chr12 46387327 46387362 -74870168 + AT_rich Low_complexity Low_complexity 1 35 0 5 938 1240 77 12 6 chr12 46387472 46387810 -74869720 + (TTTC)n Simple_repeat Simple_repeat 1 339 0 5 938 989 124 6 0 chr12 46387830 46387991 -74869539 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 5 938 2228 232 21 104 chr12 46388589 46388612 -74868918 - RMER15 LTR ERVL -3 572 548 5 938 333 0 0 0 chr12 46388612 46388649 -74868881 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 938 342 0 0 0 chr12 46388649 46388686 -74868844 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 938 2228 232 21 104 chr12 46388686 46389285 -74868245 - RMER15 LTR ERVL -28 547 2 5 938 582 79 0 0 chr12 46390163 46390252 -74867278 + (GA)n Simple_repeat Simple_repeat 1 89 0 5 938 363 310 116 12 chr12 46390517 46390690 -74866840 - L1M5 LINE L1 -1220 4926 4736 5 938 44 0 0 0 chr12 46390971 46391015 -74866515 + AT_rich Low_complexity Low_complexity 1 44 0 5 938 1473 155 7 14 chr12 46391034 46391315 -74866215 - L1_Mur1 LINE L1 -1211 4675 4397 5 938 526 173 0 0 chr12 46391318 46391422 -74866108 + L1_Mur1 LINE L1 4683 4786 -1100 5 938 2233 136 8 8 chr12 46391427 46391790 -74865740 + Lx2 LINE L1 6635 6997 0 5 938 22 56 0 0 chr12 46391791 46391827 -74865703 + AT_rich Low_complexity Low_complexity 1 36 0 5 938 26 50 0 0 chr12 46391873 46391913 -74865617 + AT_rich Low_complexity Low_complexity 1 40 0 6 938 2593 290 71 42 chr12 46391961 46393115 -74864415 - Lx9 LINE L1 -48 7596 6410 6 938 203 146 24 0 chr12 46393202 46393243 -74864287 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 6 938 301 276 72 52 chr12 46393360 46393513 -74864017 - L1M5 LINE L1 -1967 4179 4024 5 938 395 276 134 82 chr12 46393745 46393809 -74863721 - B1F2 SINE Alu 0 149 96 6 938 6089 55 4 5 chr12 46393809 46394579 -74862951 - L1Md_F2 LINE L1 -13 6569 5801 6 938 395 276 134 82 chr12 46394579 46394648 -74862882 - B1F2 SINE Alu -54 95 9 6 938 188 152 0 42 chr12 46394651 46394699 -74862831 + CT-rich Low_complexity Low_complexity 3 48 0 6 938 356 341 216 19 chr12 46395248 46395844 -74861686 - L2a LINE L2 -8 3418 2697 6 938 2364 40 35 19 chr12 46395895 46396205 -74861325 - L1Md_F3 LINE L1 -1 6583 6269 6 938 270 114 128 103 chr12 46396245 46396323 -74861207 - MLT1H2 LTR MaLR -23 466 387 6 938 484 193 64 39 chr12 46396336 46396492 -74861038 - Lx3_Mus LINE L1 0 7009 6850 6 938 2751 238 153 6 chr12 46396484 46397404 -74860126 + RMER1B Other Other 157 1052 -14 6 938 4938 163 20 31 chr12 46397617 46398696 -74858834 + L1Md_T LINE L1 139 1205 -5411 6 117 34668 33 0 0 chr12 46398702 46403119 -74854411 + L1Md_T LINE L1 1170 5586 -297 6 939 8075 54 0 0 chr12 46403119 46404115 -74853415 + L1Md_T LINE L1 5587 6582 0 6 939 477 341 53 10 chr12 46404197 46404404 -74853126 + ORR1E LTR MaLR 2 217 -142 6 939 21 0 0 0 chr12 46404892 46404913 -74852617 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 27 29 0 0 chr12 46404948 46404982 -74852548 + AT_rich Low_complexity Low_complexity 1 34 0 6 939 270 106 0 0 chr12 46405006 46405053 -74852477 + (A)n Simple_repeat Simple_repeat 1 47 0 6 939 572 40 13 0 chr12 46405342 46405417 -74852113 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 6 939 544 315 34 0 chr12 46406447 46406625 -74850905 + Lx9 LINE L1 6504 6687 -957 6 939 1338 258 96 34 chr12 46406641 46407110 -74850420 + Lx7 LINE L1 6804 7301 -395 6 939 303 203 0 0 chr12 46407140 46407209 -74850321 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 939 245 345 0 66 chr12 46407502 46407623 -74849907 - ID_B1 SINE B4 -35 189 77 6 939 440 329 110 13 chr12 46407883 46408200 -74849330 + L1MD3 LINE L1 7640 7987 -8 6 939 860 161 119 16 chr12 46408312 46408545 -74848985 - RLTR20B2 LTR ERVK -272 291 4 6 939 8875 196 34 28 chr12 46408852 46409334 -74848196 - L1_Mur3 LINE L1 -561 5319 4817 6 939 504 117 0 0 chr12 46409334 46409411 -74848119 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 6 939 8875 196 34 28 chr12 46409411 46410301 -74847229 - L1_Mur3 LINE L1 -1064 4816 3907 6 939 882 185 21 193 chr12 46410301 46410690 -74846840 - RLTRETN_Mm LTR ERVK 0 322 1 6 939 8875 196 34 28 chr12 46410690 46411140 -74846390 - L1_Mur3 LINE L1 -1974 3906 3468 6 939 1456 114 0 9 chr12 46411140 46411370 -74846160 - Lx LINE L1 0 6654 6427 6 939 8875 196 34 28 chr12 46411370 46411790 -74845740 - L1_Mur3 LINE L1 -2413 3467 3062 6 939 899 189 107 25 chr12 46411790 46411986 -74845544 - URR1B DNA MER1_type -13 212 1 6 939 615 27 0 0 chr12 46412000 46412073 -74845457 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 6 939 944 200 29 0 chr12 46412095 46412335 -74845195 - L1_Mur3 LINE L1 -2873 3007 2761 6 939 3016 109 5 2 chr12 46412336 46412769 -74844761 + Lx LINE L1 6209 6642 -12 6 939 180 0 0 0 chr12 46412769 46412789 -74844741 + (GAAAA)n Simple_repeat Simple_repeat 3 22 0 6 939 5409 146 20 15 chr12 46412789 46413878 -74843652 + Lx2A LINE L1 5835 6956 -41 6 939 324 138 15 15 chr12 46413890 46413956 -74843574 + Lx2A LINE L1 6930 6995 -13 6 939 2742 207 84 25 chr12 46413960 46414277 -74843253 - L1_Mur3 LINE L1 -3179 2701 2390 6 939 384 22 0 0 chr12 46414277 46414322 -74843208 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 939 2742 207 84 25 chr12 46414322 46414399 -74843131 - L1_Mur3 LINE L1 -3491 2389 2293 6 939 180 0 0 0 chr12 46414399 46414419 -74843111 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 939 2742 207 84 25 chr12 46414419 46414894 -74842636 - L1_Mur3 LINE L1 -3588 2292 1781 6 939 9022 138 32 9 chr12 46414941 46417487 -74840043 - Lx LINE L1 -6 6648 4044 6 939 2125 178 56 25 chr12 46417490 46418166 -74839364 - L1_Mur3 LINE L1 -4113 1767 1070 6 939 1764 109 62 74 chr12 46418166 46418502 -74839028 + IAPLTR1a_Mm LTR ERVK 1 332 -5 6 939 898 169 25 15 chr12 46418504 46418702 -74838828 - L1_Mur3 LINE L1 -6653 1075 876 6 939 607 219 57 34 chr12 46418701 46418876 -74838654 - L1_Mur3 LINE L1 -6957 771 593 6 939 244 262 24 144 chr12 46418877 46419002 -74838528 + LTR59 LTR ERV1 3 112 -485 6 939 1360 267 48 9 chr12 46419005 46419444 -74838086 - L1_Mur3 LINE L1 -7256 472 17 6 939 3147 12 0 0 chr12 46420255 46420601 -74836929 + ORR1A0 LTR MaLR 1 346 0 6 939 1517 7 0 10 chr12 46420718 46421031 -74836499 + (TCTCCC)n Simple_repeat Simple_repeat 1 309 0 6 939 229 276 67 63 chr12 46422029 46422172 -74835358 + ORR1D2 LTR MaLR 82 218 -152 6 939 324 155 70 23 chr12 46422250 46422336 -74835194 - Lx6 LINE L1 -2 7458 7369 6 939 1286 154 184 40 chr12 46422353 46422747 -74834783 + RMER6B LTR ERVK 1 451 -10 6 939 661 43 0 11 chr12 46422767 46422861 -74834669 - L1_Mus2 LINE L1 0 6566 6474 6 939 2008 303 120 3 chr12 46422873 46423082 -74834448 - Lx6 LINE L1 -96 7364 7151 6 939 285 98 0 0 chr12 46423082 46423123 -74834407 + (TAAG)n Simple_repeat Simple_repeat 2 42 0 6 939 2008 301 81 112 chr12 46423123 46423909 -74833621 - Lx6 LINE L1 -310 7150 6048 6 939 237 33 0 0 chr12 46423909 46423939 -74833591 + (CAA)n Simple_repeat Simple_repeat 1 30 0 6 939 1541 301 81 112 chr12 46423939 46424125 -74833405 - Lx6 LINE L1 -1003 6047 5834 6 939 236 300 70 0 chr12 46424123 46424223 -74833307 - HAL1 LINE L1 -1106 1401 1295 6 939 1888 202 53 55 chr12 46424314 46424826 -74832704 - Lx6 LINE L1 -42 5838 5328 6 939 208 150 25 0 chr12 46424877 46424917 -74832613 + CT-rich Low_complexity Low_complexity 3 43 0 6 939 277 268 242 8 chr12 46425059 46425307 -74832223 - HAL1 LINE L1 -1091 1416 1111 6 939 1514 198 65 75 chr12 46425339 46425710 -74831820 - ORR1B2 LTR MaLR 0 367 1 6 939 249 119 0 0 chr12 46425826 46425868 -74831662 + (T)n Simple_repeat Simple_repeat 1 42 0 6 939 6251 111 15 0 chr12 46426208 46427167 -74830363 + L1_Mus4 LINE L1 5662 6634 -2 6 939 1010 325 66 24 chr12 46428437 46429335 -74828195 + L1_Mur3 LINE L1 1263 2206 -3641 6 939 3912 65 31 8 chr12 46429335 46429875 -74827655 + L1_Mus1 LINE L1 6039 6567 0 6 939 1010 330 44 19 chr12 46429875 46429960 -74827570 + L1_Mur3 LINE L1 2188 2267 -3613 6 939 199 380 63 1 chr12 46430615 46430777 -74826753 - MIR SINE MIR -88 180 6 6 939 537 246 112 67 chr12 46430820 46430999 -74826531 - B4A SINE B4 -22 270 84 6 939 230 125 21 0 chr12 46430999 46431047 -74826483 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 6 939 329 297 0 0 chr12 46431063 46431137 -74826393 - B4A SINE B4 -218 74 1 6 939 1466 273 37 31 chr12 46432019 46432506 -74825024 + Lx6 LINE L1 6966 7455 -5 6 939 700 109 8 8 chr12 46432548 46432677 -74824853 + L1_Mus4 LINE L1 6492 6620 -16 6 939 2171 169 46 0 chr12 46432680 46433111 -74824419 - MYSERV6-int LTR ERVK -6842 2117 1667 6 939 43 76 0 0 chr12 46433242 46433334 -74824196 + AT_rich Low_complexity Low_complexity 1 92 0 6 939 566 108 21 21 chr12 46433538 46433633 -74823897 + RMER6B LTR ERVK 367 461 0 6 939 2015 314 59 22 chr12 46433645 46434508 -74823022 + RMER1C Other Other 446 1340 -2 6 939 1862 193 67 18 chr12 46434681 46435071 -74822459 - MTC LTR MaLR -8 413 5 6 939 303 49 0 0 chr12 46435420 46435461 -74822069 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 939 321 284 126 22 chr12 46435469 46435673 -74821857 - MT2A LTR ERVL -4 580 359 6 939 3787 163 23 14 chr12 46436313 46437142 -74820388 + L1Md_F2 LINE L1 238 1085 -5639 6 939 10625 78 11 3 chr12 46437140 46438663 -74818867 + L1Md_F2 LINE L1 4050 5585 -298 6 939 7451 83 0 5 chr12 46438664 46439659 -74817871 + L1Md_F2 LINE L1 5587 6576 -6 6 939 216 0 0 0 chr12 46439723 46439747 -74817783 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 6 939 229 204 0 0 chr12 46439747 46439801 -74817729 + (CAAA)n Simple_repeat Simple_repeat 1 54 0 6 939 412 236 52 52 chr12 46440179 46440295 -74817235 - MT2A LTR ERVL -178 355 240 6 939 525 183 51 25 chr12 46440271 46440389 -74817141 + B1_Mus2 SINE Alu 27 147 0 6 939 609 250 0 14 chr12 46440410 46440556 -74816974 - MT2A LTR ERVL -324 209 66 6 939 324 329 37 37 chr12 46440472 46440633 -74816897 - MTD LTR MaLR -241 178 18 6 939 1201 62 0 0 chr12 46440682 46440828 -74816702 - B1_Mus1 SINE Alu 0 148 3 6 939 1355 53 11 16 chr12 46440828 46441018 -74816512 + L1Md_F3 LINE L1 6395 6583 -1 6 939 656 276 57 24 chr12 46441071 46441325 -74816205 + ORR1D-int LTR MaLR 1028 1393 -116 6 939 311 329 67 20 chr12 46441422 46441571 -74815959 - LTR86B1 LTR ERVL -38 455 300 6 939 864 0 0 0 chr12 46442005 46442101 -74815429 + (TTC)n Simple_repeat Simple_repeat 1 96 0 6 939 1340 257 98 13 chr12 46443139 46443518 -74814012 + MTD LTR MaLR 6 416 -3 6 939 562 294 46 36 chr12 46445234 46445453 -74812077 - RMER15 LTR ERVL -5 570 350 6 939 4374 231 30 38 chr12 46445893 46447075 -74810455 + L1_Mur3 LINE L1 4403 5575 -305 6 939 823 239 19 82 chr12 46447515 46447784 -74809746 - MT2B LTR ERVL 0 601 350 6 939 526 174 57 65 chr12 46447814 46447937 -74809593 - MT2B LTR ERVL -478 123 2 6 939 256 302 0 0 chr12 46448529 46448582 -74808948 + ID4 SINE ID 2 54 -29 6 939 2275 175 37 0 chr12 46449143 46449549 -74807981 - MTC LTR MaLR 0 421 1 6 939 239 313 243 37 chr12 46450906 46451042 -74806488 + RSINE1 SINE B4 2 165 0 6 939 1064 206 188 40 chr12 46451426 46451755 -74805775 - ORR1C1 LTR MaLR 0 378 1 6 939 225 286 0 20 chr12 46452262 46452312 -74805218 - LTR88c LTR Genie? -802 60 12 6 939 417 323 75 28 chr12 46453111 46453344 -74804186 + LTR16B LTR ERVL 5 237 -226 6 939 427 305 23 0 chr12 46453380 46453511 -74804019 + LTR16B LTR ERVL 330 463 0 6 939 483 313 163 70 chr12 46453690 46453917 -74803613 - MLT1G3 LTR MaLR -102 493 239 6 939 186 43 0 0 chr12 46454555 46454578 -74802952 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 939 227 279 0 0 chr12 46454743 46454804 -74802726 + HAL1 LINE L1 1482 1542 -965 6 939 217 294 70 42 chr12 46454805 46454876 -74802654 + PB1D10 SINE Alu 1 73 -44 6 939 2138 58 10 7 chr12 46455038 46455335 -74802195 - L1_Mus3 LINE L1 -1 6637 6340 6 939 216 299 126 0 chr12 46455728 46455815 -74801715 - MIRc SINE MIR -78 190 93 6 939 27 62 0 0 chr12 46456915 46456963 -74800567 + AT_rich Low_complexity Low_complexity 1 48 0 6 939 567 281 64 25 chr12 46458171 46458328 -74799202 - RSINE1 SINE B4 -1 164 2 6 939 356 179 0 12 chr12 46458751 46458836 -74798694 + Lx2 LINE L1 6892 6975 -22 6 939 929 234 11 0 chr12 46459568 46459752 -74797778 - ORR1D1 LTR MaLR -188 186 1 6 939 426 259 0 34 chr12 46460682 46460770 -74796760 + 5S rRNA rRNA 1 85 -36 6 939 437 323 11 19 chr12 46461080 46461308 -74796222 + L1MA4 LINE L1 5639 5895 -405 6 939 1615 283 96 16 chr12 46461354 46461990 -74795540 + Lx8 LINE L1 6785 7471 -2 6 939 22 0 0 0 chr12 46461990 46462012 -74795518 + AT_rich Low_complexity Low_complexity 1 22 0 7 939 484 318 71 0 chr12 46462018 46462188 -74795342 + B3 SINE B2 35 216 0 7 939 474 124 0 0 chr12 46462701 46462790 -74794740 + (GA)n Simple_repeat Simple_repeat 2 90 0 7 939 33161 107 12 22 chr12 46462830 46464693 -74792837 + L1Md_F3 LINE L1 208 1974 -3909 7 939 8406 31 2 0 chr12 46464693 46465686 -74791844 + L1Md_T LINE L1 5588 6582 0 7 939 33161 51 2 41 chr12 46465686 46469361 -74788169 + L1Md_F3 LINE L1 1975 5586 -297 7 939 7802 50 7 2 chr12 46469361 46470354 -74787176 + L1Md_F3 LINE L1 5587 6584 0 7 939 33 0 0 0 chr12 46470402 46470435 -74787095 + AT_rich Low_complexity Low_complexity 1 33 0 7 939 309 109 0 0 chr12 46470912 46470958 -74786572 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 7 939 1193 101 6 0 chr12 46470961 46471140 -74786390 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 7 939 1094 103 0 0 chr12 46471146 46471291 -74786239 - B1_Mus1 SINE Alu -2 146 2 7 939 29 0 0 0 chr12 46471292 46471321 -74786209 + AT_rich Low_complexity Low_complexity 1 29 0 7 939 35 41 0 0 chr12 46471768 46471817 -74785713 + AT_rich Low_complexity Low_complexity 1 49 0 7 939 462 36 0 0 chr12 46471822 46471878 -74785652 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 939 858 192 69 46 chr12 46471980 46472283 -74785247 - MYSERV6-int LTR ERVK -912 8047 7813 7 939 361 294 68 32 chr12 46472291 46472460 -74785070 - RMER4A LTR ERVK -28 557 272 7 939 27526 139 34 23 chr12 46472460 46475518 -74782012 - L1_Mus2 LINE L1 -2 6564 3481 7 939 524 15 15 0 chr12 46475518 46475583 -74781947 + (TTTTG)n Simple_repeat Simple_repeat 1 66 0 7 939 27526 147 31 8 chr12 46475583 46478570 -74778960 - L1_Mus2 LINE L1 -2403 3480 409 7 939 652 277 79 44 chr12 46478619 46478943 -74778587 - MYSERV6-int LTR ERVK -1436 5114 4853 7 939 3168 283 50 20 chr12 46479000 46480161 -74777369 - MYSERV6-int LTR ERVK -1761 4789 3594 7 939 1259 120 0 0 chr12 46480165 46480357 -74777173 - BGLII_A LTR ERVK -2 443 252 7 939 1423 186 36 30 chr12 46480375 46480712 -74776818 - RMER3D-int LTR ERVK -972 1870 1532 7 939 1839 183 113 14 chr12 46480744 46481235 -74776295 - RMER3D-int LTR ERVK -1309 1533 1014 7 939 547 207 35 0 chr12 46481242 46481358 -74776172 - RMER3D-int LTR ERVK -2238 604 485 7 939 7876 221 37 46 chr12 46481394 46481514 -74776016 - MYSERV6-int LTR ERVK -5439 3520 3396 7 939 2952 35 0 0 chr12 46481514 46481858 -74775672 + ORR1A0 LTR MaLR 1 344 -2 7 939 7876 221 37 46 chr12 46481858 46483943 -74773587 - MYSERV6-int LTR ERVK -5564 3395 1334 7 939 2349 275 61 14 chr12 46483964 46484734 -74772796 - MYSERV6-int LTR ERVK -7724 1235 430 7 939 378 0 0 0 chr12 46485137 46485179 -74772351 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 7 939 447 68 0 0 chr12 46485180 46485239 -74772291 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 939 925 301 33 35 chr12 46485248 46485616 -74771914 + RLTR20A LTR ERVK 148 514 -27 7 939 917 158 76 0 chr12 46485744 46485791 -74771739 - B2_Mm2 SINE B2 0 195 146 7 939 464 32 16 0 chr12 46485791 46485853 -74771677 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 939 917 158 76 0 chr12 46485853 46485976 -74771554 - B2_Mm2 SINE B2 -50 145 14 7 939 193 356 0 32 chr12 46486039 46486132 -74771398 - L2b LINE L2 -47 3328 3239 7 939 251 241 12 12 chr12 46487277 46487357 -74770173 - RLTR11B LTR ERVK -168 285 206 7 939 329 311 57 14 chr12 46487579 46487748 -74769782 - L1M4 LINE L1 -5086 1456 1266 7 939 357 331 63 31 chr12 46487797 46487956 -74769574 - B3 SINE B2 0 216 53 7 939 537 92 0 0 chr12 46488284 46488360 -74769170 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 939 375 259 92 30 chr12 46488992 46489156 -74768374 - B3 SINE B2 -9 186 17 7 939 207 114 0 0 chr12 46489388 46489423 -74768107 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7 939 360 0 0 0 chr12 46491138 46491178 -74766352 + (TATG)n Simple_repeat Simple_repeat 4 43 0 7 939 480 275 56 37 chr12 46492153 46492368 -74765162 - L1MA7 LINE L1 -34 6257 6039 7 939 398 245 122 0 chr12 46492580 46492678 -74764852 - B1_Mur1 SINE Alu -21 128 19 7 939 683 280 72 5 chr12 46492767 46492975 -74764555 + Lx8 LINE L1 6579 6800 -673 7 939 2888 93 26 7 chr12 46493211 46493632 -74763898 - L1_Mus2 LINE L1 -2 6564 6136 7 939 1038 307 54 22 chr12 46493651 46494061 -74763469 + Lx8 LINE L1 6788 7210 -263 7 939 1474 119 0 0 chr12 46494428 46494646 -74762884 - L1Md_F LINE L1 -6028 491 274 7 939 243 0 0 0 chr12 46496146 46496173 -74761357 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 939 527 178 23 17 chr12 46496173 46496350 -74761180 + (TA)n Simple_repeat Simple_repeat 1 178 0 7 939 266 343 26 19 chr12 46496391 46496540 -74760990 - MIR SINE MIR -40 228 69 7 939 21 36 0 0 chr12 46496958 46496986 -74760544 + AT_rich Low_complexity Low_complexity 1 28 0 7 939 998 294 95 0 chr12 46497091 46497417 -74760113 + MTD LTR MaLR 59 415 -4 7 939 325 307 72 69 chr12 46498320 46498596 -74758934 + L1MC1 LINE L1 6036 6312 -21 7 939 1142 275 89 15 chr12 46498664 46498989 -74758541 + ORR1E LTR MaLR 1 349 -10 7 939 259 321 108 54 chr12 46499025 46499173 -74758357 - MLT1D LTR MaLR -4 501 346 7 939 195 69 0 0 chr12 46499233 46499262 -74758268 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 939 724 285 118 45 chr12 46499295 46499626 -74757904 - MTE2a LTR MaLR -3 376 22 7 939 419 0 0 19 chr12 46499644 46499696 -74757834 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 7 939 393 188 0 0 chr12 46500977 46501057 -74756473 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 939 612 0 0 0 chr12 46501663 46501731 -74755799 + (TTTC)n Simple_repeat Simple_repeat 4 71 0 2 939 1187 61 0 13 chr12 46501741 46501891 -74755639 - B1_Mus1 SINE Alu 0 148 1 3 939 189 278 104 62 chr12 46502382 46502478 -74755052 + MIR3 SINE MIR 84 183 -25 4 939 659 185 7 0 chr12 46503230 46503376 -74754154 + (TATG)n Simple_repeat Simple_repeat 4 150 0 5 939 321 328 71 8 chr12 46503943 46504069 -74753461 - MTE2b LTR MaLR -189 190 57 6 939 479 207 7 0 chr12 46505232 46505372 -74752158 + (TG)n Simple_repeat Simple_repeat 2 142 0 7 939 1718 56 0 0 chr12 46505418 46505633 -74751897 - L1_Mus2 LINE L1 0 6566 6352 8 939 529 296 160 13 chr12 46507010 46507404 -74750126 + L1MCa LINE L1 83 534 -5974 9 939 180 0 0 0 chr12 46507849 46507869 -74749661 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 1 939 2132 132 6 3 chr12 46507869 46508204 -74749326 - Lx3A LINE L1 -2 6979 6644 1 939 3074 146 58 0 chr12 46508302 46508821 -74748709 + Lx3B LINE L1 6421 6969 -4 1 939 4608 51 0 2 chr12 46509082 46509654 -74747876 - L1Md_F2 LINE L1 -2 6580 6010 1 939 212 276 171 0 chr12 46510721 46510797 -74746733 - PB1D10 SINE Alu -16 101 13 1 939 365 379 65 0 chr12 46510856 46511009 -74746521 - RSINE1 SINE B4 0 165 3 1 939 31 68 0 0 chr12 46511294 46511353 -74746177 + AT_rich Low_complexity Low_complexity 1 59 0 1 939 1355 58 26 5 chr12 46511438 46511628 -74745902 - L1_Mus1 LINE L1 -1 6566 6373 1 939 22 0 0 0 chr12 46511712 46511734 -74745796 + AT_rich Low_complexity Low_complexity 1 22 0 1 939 335 348 138 24 chr12 46511834 46512167 -74745363 - L1ME3B LINE L1 -346 5894 5524 1 939 252 0 0 0 chr12 46512897 46512925 -74744605 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 939 1799 58 8 4 chr12 46512925 46513165 -74744365 - L1_Mus3 LINE L1 -7 6631 6391 2 939 539 32 115 6 chr12 46513600 46513757 -74743773 + GA-rich Low_complexity Low_complexity 1 174 0 2 939 338 70 35 0 chr12 46513769 46513826 -74743704 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 2 939 1941 157 38 0 chr12 46514135 46514478 -74743052 - Lx2A1 LINE L1 -548 6460 6105 2 939 2962 185 11 15 chr12 46514484 46515032 -74742498 + Lx2B LINE L1 6455 7000 0 2 939 571 180 0 0 chr12 46515894 46516005 -74741525 + L1VL1 LINE L1 204 314 -6108 2 939 391 279 9 0 chr12 46516035 46516146 -74741384 - MTEb LTR MaLR -267 112 1 2 939 259 288 42 17 chr12 46516293 46516413 -74741117 - Lx9 LINE L1 -892 6752 6630 2 939 30104 84 7 16 chr12 46516415 46521542 -74735988 + L1Md_F2 LINE L1 537 5586 -297 2 939 7477 68 8 12 chr12 46521543 46522274 -74735256 + L1Md_F2 LINE L1 5588 6326 -256 2 939 4170 35 0 0 chr12 46522274 46522756 -74734774 - LTRIS_Mm LTR ERV1 0 482 1 3 939 7477 68 8 12 chr12 46522756 46523022 -74734508 + L1Md_F2 LINE L1 6327 6581 -1 2 939 23 68 0 0 chr12 46524463 46524507 -74733023 + AT_rich Low_complexity Low_complexity 1 44 0 3 939 245 385 42 7 chr12 46524865 46525009 -74732521 - MIR3 SINE MIR -13 195 47 3 939 839 200 0 0 chr12 46525288 46525428 -74732102 + B3 SINE B2 1 140 -76 3 939 303 358 39 39 chr12 46526099 46526253 -74731277 - MLT1B LTR MaLR -25 365 212 3 939 282 282 70 11 chr12 46526322 46526475 -74731055 - MLT1B LTR MaLR -115 259 92 3 939 6272 13 0 0 chr12 46526642 46527345 -74730185 + L1Md_A LINE L1 5880 6582 0 3 939 463 155 58 0 chr12 46528099 46528202 -74729328 - Lx3C LINE L1 -5 6971 6863 3 939 1336 169 29 40 chr12 46530130 46530407 -74727123 - RLTR46 LTR ERVK -5 315 42 3 940 243 0 0 0 chr12 46531044 46531071 -74726459 + (T)n Simple_repeat Simple_repeat 1 27 0 3 940 1098 252 138 31 chr12 46531287 46531607 -74725923 - ORR1E LTR MaLR -2 357 4 3 940 927 179 0 0 chr12 46532025 46532204 -74725326 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 4 940 303 295 54 0 chr12 46532892 46533004 -74724526 + MIR SINE MIR 118 235 -27 4 940 385 351 92 33 chr12 46534416 46534687 -74722843 - L1MEg LINE L1 -4938 1146 860 4 940 368 300 225 45 chr12 46534712 46535284 -74722246 - L2a LINE L2 0 3426 2525 4 940 978 267 143 58 chr12 46535384 46535936 -74721594 + MT2B LTR ERVL 3 601 0 4 940 350 334 82 25 chr12 46536273 46536496 -74721034 + MIR SINE MIR 5 245 -23 4 940 340 295 92 15 chr12 46538762 46538893 -74718637 + RMER5 LTR ERV1 23 163 -371 4 940 704 277 172 4 chr12 46538907 46539175 -74718355 + RMER5 LTR ERV1 220 532 -2 4 940 1209 245 152 18 chr12 46539702 46540031 -74717499 + ORR1C1 LTR MaLR 6 378 0 4 940 22 35 0 0 chr12 46540134 46540163 -74717367 + AT_rich Low_complexity Low_complexity 1 29 0 4 940 23 0 0 0 chr12 46541785 46541808 -74715722 + AT_rich Low_complexity Low_complexity 1 23 0 4 940 906 10 0 0 chr12 46544394 46544497 -74713033 + (GA)n Simple_repeat Simple_repeat 1 103 0 5 940 238 300 0 36 chr12 46546385 46546468 -74711062 + LTR83 LTR ERVL 297 376 -404 5 940 19590 73 9 1 chr12 46547964 46551434 -74706096 - L1Md_F2 LINE L1 -7 6575 3076 5 940 1500 114 107 0 chr12 46551433 46551714 -74705816 + MusHAL1 LINE L1 1626 1936 -776 5 940 898 106 0 7 chr12 46551710 46551852 -74705678 - L1Md_F2 LINE L1 -3507 2376 2236 5 940 4414 14 2 0 chr12 46551852 46552344 -74705186 + MT2_Mm LTR ERVL 1 493 0 5 940 42336 16 6 0 chr12 46552344 46557671 -74699859 + MERVL-int LTR ERVL 1 5360 -125 5 940 390 167 46 35 chr12 46557671 46557758 -74699772 + ORR1A3-int LTR MaLR 553 640 -1323 5 940 302 0 0 0 chr12 46557758 46557796 -74699734 + MERVL-int LTR ERVL 5448 5485 0 5 940 4414 14 2 0 chr12 46557796 46558288 -74699242 + MT2_Mm LTR ERVL 1 493 0 5 940 6759 75 12 5 chr12 46558288 46559271 -74698259 - L1Md_F2 LINE L1 -3643 2240 1250 5 940 297 0 0 0 chr12 46559271 46559304 -74698226 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 940 6759 179 22 45 chr12 46559304 46560162 -74697368 - L1Md_F2 LINE L1 -5475 1249 420 5 940 311 290 39 33 chr12 46560194 46560376 -74697154 - L1M4 LINE L1 -2598 3548 3366 5 940 4531 192 38 9 chr12 46560561 46561736 -74695794 + Lx5 LINE L1 4716 5933 -1117 5 940 288 229 47 14 chr12 46561798 46561962 -74695568 + Lx6 LINE L1 7366 7459 -1 5 940 1194 68 0 0 chr12 46561987 46562134 -74695396 + B1_Mus2 SINE Alu 1 147 0 6 940 228 67 0 0 chr12 46562134 46562164 -74695366 + (A)n Simple_repeat Simple_repeat 1 30 0 6 940 359 347 81 38 chr12 46562881 46563252 -74694278 - L2a LINE L2 -108 3318 2932 6 940 2346 148 166 24 chr12 46563296 46563789 -74693741 - RMER15 LTR ERVL -12 563 1 6 940 509 328 118 21 chr12 46563789 46564119 -74693411 - L2a LINE L2 -537 2882 2521 6 940 252 0 0 0 chr12 46564363 46564391 -74693139 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 940 189 0 0 0 chr12 46564640 46564661 -74692869 + (T)n Simple_repeat Simple_repeat 1 21 0 6 940 279 0 0 0 chr12 46565926 46565957 -74691573 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 940 2715 108 56 5 chr12 46566136 46566545 -74690985 + RLTR23 LTR ERV1 1 430 0 6 940 25 0 0 0 chr12 46568419 46568444 -74689086 + AT_rich Low_complexity Low_complexity 1 25 0 6 940 342 0 0 0 chr12 46569942 46569980 -74687550 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 940 891 213 177 16 chr12 46570556 46570804 -74686726 - ORR1D1 LTR MaLR 0 374 87 7 940 570 167 0 0 chr12 46570821 46570929 -74686601 + T-rich Low_complexity Low_complexity 1 108 0 7 940 867 90 0 0 chr12 46571152 46571274 -74686256 + B1_Mm SINE Alu 5 126 -21 7 940 261 167 0 0 chr12 46571274 46571328 -74686202 + GA-rich Low_complexity Low_complexity 3 56 0 7 940 6666 66 8 2 chr12 46571352 46572245 -74685285 - L1Md_F2 LINE L1 -12 6570 5673 7 940 265 170 146 87 chr12 46572246 46572267 -74685263 - ORR1D1 LTR MaLR -275 109 89 7 940 355 111 0 0 chr12 46572267 46572330 -74685200 - Lx2 LINE L1 -1 6996 6934 7 940 321 156 178 16 chr12 46572330 46572411 -74685119 - ORR1D1 LTR MaLR -283 91 1 7 940 8377 12 0 0 chr12 46573528 46574778 -74682752 - L1Md_A LINE L1 0 6582 5333 7 940 2240 56 3 9 chr12 46574780 46575102 -74682428 - L1Md_A LINE L1 -5960 764 445 7 940 207 0 0 0 chr12 46577551 46577574 -74679956 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 940 405 0 0 0 chr12 46577741 46577786 -74679744 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 940 22 0 0 0 chr12 46578212 46578234 -74679296 + AT_rich Low_complexity Low_complexity 1 22 0 8 940 5868 37 0 1 chr12 46578564 46579294 -74678236 - L1Md_F2 LINE L1 -76 6506 5778 8 940 587 271 43 24 chr12 46579545 46579753 -74677777 + Lx8 LINE L1 6243 6454 -1019 8 940 396 337 113 0 chr12 46579790 46580090 -74677440 + Lx8 LINE L1 6763 7096 -377 8 940 248 344 12 99 chr12 46580318 46580489 -74677041 - L3 LINE CR1 -1116 3373 3218 8 940 8049 14 0 9 chr12 46581152 46582074 -74675456 + L1Md_A LINE L1 5669 6582 0 8 940 342 0 0 0 chr12 46582227 46582265 -74675265 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 940 296 113 38 0 chr12 46582309 46582362 -74675168 + CT-rich Low_complexity Low_complexity 1 55 0 8 940 1007 100 0 11 chr12 46582364 46582546 -74674984 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 8 940 423 319 70 7 chr12 46582546 46582688 -74674842 - RSINE1 SINE B4 -12 153 3 8 940 1429 218 50 25 chr12 46585673 46586036 -74671494 + ORR1D1 LTR MaLR 3 374 0 8 940 291 360 133 11 chr12 46586563 46586743 -74670787 - MIRb SINE MIR -16 252 51 9 940 307 355 65 36 chr12 46587138 46587416 -74670114 - RLTR15 LTR ERVK -25 334 49 9 940 31 58 0 0 chr12 46587758 46587810 -74669720 + AT_rich Low_complexity Low_complexity 1 52 0 9 940 2858 26 21 0 chr12 46589203 46589542 -74667988 + ORR1A0 LTR MaLR 1 346 0 9 940 972 268 137 4 chr12 46591471 46591748 -74665782 + ORR1D1 LTR MaLR 1 314 -60 9 940 369 0 0 0 chr12 46591924 46591965 -74665565 + (T)n Simple_repeat Simple_repeat 1 41 0 9 940 465 322 224 26 chr12 46592119 46592614 -74664916 + L2 LINE L2 2213 2805 -614 9 940 502 281 115 22 chr12 46593670 46593896 -74663634 + MIRc SINE MIR 19 265 -3 9 940 3427 123 2 13 chr12 46594316 46594866 -74662664 + Lx2 LINE L1 6084 6627 -370 9 940 1333 130 0 13 chr12 46595073 46595299 -74662231 + Lx2 LINE L1 6775 6997 0 9 940 213 65 0 0 chr12 46595422 46595453 -74662077 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 940 1092 80 0 0 chr12 46595453 46595590 -74661940 - B1_Mm SINE Alu -10 137 1 1 940 291 250 12 24 chr12 46595602 46595684 -74661846 - MTE2b LTR MaLR -2 377 297 1 940 454 301 119 12 chr12 46595681 46595849 -74661681 - MTE2b LTR MaLR -193 186 1 1 940 576 271 90 0 chr12 46596631 46596786 -74660744 + B3 SINE B2 48 216 0 1 940 1110 95 6 11 chr12 46597255 46597436 -74660094 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 940 192 279 98 0 chr12 46597445 46597506 -74660024 + MIRm SINE MIR 192 258 -18 1 940 420 55 0 0 chr12 46597642 46597697 -74659833 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 940 326 314 58 26 chr12 46597699 46597889 -74659641 - B4A SINE B4 0 292 97 1 940 213 139 23 0 chr12 46598325 46598368 -74659162 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 940 818 185 32 8 chr12 46598373 46598533 -74658997 + ORR1C1 LTR MaLR 220 377 -2 1 940 42 92 0 0 chr12 46598631 46598750 -74658780 + AT_rich Low_complexity Low_complexity 1 119 0 1 940 635 274 39 17 chr12 46598778 46598956 -74658574 - B3A SINE B2 -16 182 1 1 940 30 27 0 0 chr12 46599740 46599777 -74657753 + AT_rich Low_complexity Low_complexity 1 37 0 1 940 448 234 178 40 chr12 46600515 46600689 -74656841 - B3A SINE B2 0 198 1 1 940 297 0 0 0 chr12 46602923 46602956 -74654574 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 940 604 198 45 30 chr12 46603147 46603420 -74654110 + RMER10A LTR ERVL 1 349 -93 1 940 213 209 0 0 chr12 46603452 46603495 -74654035 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 1 940 234 319 14 0 chr12 46604372 46604441 -74653089 + MIRc SINE MIR 49 118 -150 1 940 1020 61 0 0 chr12 46605696 46605828 -74651702 + (TTTTC)n Simple_repeat Simple_repeat 2 133 0 1 940 2193 98 35 12 chr12 46605835 46606176 -74651354 - Lx LINE L1 -7 6647 6299 1 940 2298 266 93 49 chr12 46606203 46606777 -74650753 + RCHARR1 DNA MER1_type 37 634 -340 1 940 207 0 0 0 chr12 46606777 46606800 -74650730 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 940 534 31 0 0 chr12 46606800 46606863 -74650667 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 940 2298 266 93 49 chr12 46606863 46606949 -74650581 + RCHARR1 DNA MER1_type 635 732 -242 1 940 1372 89 5 5 chr12 46606949 46607140 -74650390 - B2_Mm2 SINE B2 -2 193 3 1 940 2298 266 93 49 chr12 46607140 46607375 -74650155 + RCHARR1 DNA MER1_type 733 973 -1 1 940 210 370 0 24 chr12 46608122 46608205 -74649325 + ID4 SINE ID 3 83 0 1 940 576 188 86 0 chr12 46610302 46610430 -74647100 - B1_Mur4 SINE Alu -10 140 2 1 940 212 211 0 55 chr12 46611374 46611429 -74646101 + MIR SINE MIR 125 176 -86 1 940 23 33 0 0 chr12 46611541 46611571 -74645959 + AT_rich Low_complexity Low_complexity 1 30 0 1 940 189 385 39 0 chr12 46611807 46611885 -74645645 - MIR SINE MIR -92 170 90 1 940 291 208 0 49 chr12 46612005 46612086 -74645444 + CT-rich Low_complexity Low_complexity 1 77 0 1 940 538 275 43 7 chr12 46612094 46612233 -74645297 - ID_B1 SINE B4 0 224 81 1 940 1675 167 142 6 chr12 46612393 46612561 -74644969 - ORR1C2 LTR MaLR 0 384 191 1 940 453 19 0 0 chr12 46612561 46612615 -74644915 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 940 1675 167 142 6 chr12 46612615 46612784 -74644746 - ORR1C2 LTR MaLR -194 190 3 1 940 1518 75 5 0 chr12 46613807 46614008 -74643522 + L1_Mus1 LINE L1 6364 6565 -2 1 940 261 282 125 25 chr12 46614661 46614821 -74642709 + MER3 DNA MER1_type 24 199 -10 1 940 584 333 90 93 chr12 46616656 46616924 -74640606 - MLT1H LTR MaLR -265 330 64 1 940 476 348 160 31 chr12 46617072 46617517 -74640013 - MER34A1 LTR ERV1 -75 512 11 1 940 228 35 0 0 chr12 46617633 46617662 -74639868 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 1 940 543 280 29 47 chr12 46618477 46618649 -74638881 + MER5B DNA MER1_type 8 176 -2 1 940 201 121 0 0 chr12 46618891 46618924 -74638606 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 940 1689 186 61 56 chr12 46619008 46619383 -74638147 + ORR1C1 LTR MaLR 2 378 0 1 940 275 156 31 0 chr12 46621070 46621134 -74636396 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 1 940 200 381 87 29 chr12 46622241 46622379 -74635151 + MIR3 SINE MIR 6 151 -57 1 940 392 289 47 138 chr12 46625824 46626165 -74631365 - ORR1E LTR MaLR -31 328 19 1 940 31 0 0 0 chr12 46627391 46627422 -74630108 + AT_rich Low_complexity Low_complexity 1 31 0 1 940 203 267 0 0 chr12 46628871 46628931 -74628599 + A-rich Low_complexity Low_complexity 1 60 0 1 940 545 123 37 29 chr12 46629411 46629654 -74627876 + (TAGA)n Simple_repeat Simple_repeat 1 245 0 1 940 303 68 51 0 chr12 46629759 46629818 -74627712 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1 940 375 23 0 0 chr12 46629821 46629865 -74627665 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 1 940 366 80 0 0 chr12 46630359 46630409 -74627121 + (CATA)n Simple_repeat Simple_repeat 2 51 0 1 940 49 60 0 0 chr12 46630429 46630513 -74627017 + AT_rich Low_complexity Low_complexity 1 84 0 1 940 203 0 37 0 chr12 46630920 46630947 -74626583 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 1 940 795 197 19 29 chr12 46630947 46631150 -74626380 - B3 SINE B2 0 195 1 1 940 20010 150 104 52 chr12 46631848 46634288 -74623242 - L1VL4 LINE L1 -103 5780 3143 1 940 369 0 0 0 chr12 46634288 46634329 -74623201 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 940 20010 157 82 62 chr12 46634329 46636814 -74620716 - L1VL4 LINE L1 -2741 3142 684 1 940 6860 63 6 10 chr12 46636833 46637148 -74620382 - L1_Mus1 LINE L1 -1 6566 6259 1 940 2878 36 0 88 chr12 46637148 46637547 -74619983 + RLTR10B2 LTR ERVK 1 364 -1 1 940 6860 63 6 10 chr12 46637547 46638116 -74619414 - L1_Mus1 LINE L1 -309 6258 5686 1 940 820 275 23 23 chr12 46638208 46638424 -74619106 + B3 SINE B2 1 216 0 1 940 23 0 0 0 chr12 46638609 46638632 -74618898 + AT_rich Low_complexity Low_complexity 1 23 0 1 940 207 0 0 0 chr12 46640472 46640495 -74617035 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 940 301 348 80 0 chr12 46640921 46641059 -74616471 - L1MC LINE L1 -2164 5718 5570 1 940 341 335 128 47 chr12 46641062 46641297 -74616233 - L1MC LINE L1 -2260 5622 5369 1 940 434 301 82 24 chr12 46642475 46642645 -74614885 - B3A SINE B2 -15 183 4 1 940 204 179 0 0 chr12 46643983 46644022 -74613508 + T-rich Low_complexity Low_complexity 1 39 0 1 940 1916 266 68 14 chr12 46644415 46644911 -74612619 - Lx6 LINE L1 0 7460 6938 1 940 594 214 8 82 chr12 46645176 46645310 -74612220 + B1_Mur4 SINE Alu 2 127 -22 1 940 196 250 0 0 chr12 46646077 46646117 -74611413 - MIRm SINE MIR -5 271 232 1 940 348 261 17 17 chr12 46646832 46646949 -74610581 + L1MD1 LINE L1 6104 6220 -22 1 940 233 342 0 0 chr12 46646959 46647038 -74610492 + Charlie7 DNA MER1_type 2003 2081 -531 1 940 277 274 27 0 chr12 46647043 46647116 -74610414 + ID4 SINE ID 1 75 -8 1 940 553 261 103 37 chr12 46647186 46647457 -74610073 + Charlie7 DNA MER1_type 2105 2393 -219 1 940 250 359 29 10 chr12 46648705 46648809 -74608721 + MLT1D LTR MaLR 278 383 -122 1 940 1188 297 69 18 chr12 46648855 46649421 -74608109 + L1MA4 LINE L1 3602 4196 -1947 1 940 264 261 159 0 chr12 46649585 46649654 -74607876 + B4 SINE B4 1 80 -212 1 940 324 315 117 0 chr12 46649692 46649803 -74607727 + B4 SINE B4 163 286 -6 1 940 600 14 0 0 chr12 46649834 46649903 -74607627 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 940 377 287 58 19 chr12 46649987 46650257 -74607273 + L1MA4 LINE L1 4487 4781 -1362 1 940 352 272 0 8 chr12 46650461 46650587 -74606943 + L1MA4 LINE L1 5320 5444 -853 1 940 796 231 0 0 chr12 46650605 46650761 -74606769 + Lx9 LINE L1 7263 7418 -226 1 940 504 0 0 0 chr12 46650761 46650817 -74606713 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 940 248 0 31 0 chr12 46650915 46650947 -74606583 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 940 2914 263 72 27 chr12 46651525 46652373 -74605157 - Lx6 LINE L1 -57 7403 6518 1 940 885 266 90 10 chr12 46652374 46652663 -74604867 - Lx6 LINE L1 -1188 6272 5961 1 940 456 140 46 9 chr12 46652679 46652787 -74604743 + Lx9 LINE L1 7532 7643 -1 1 940 1181 293 115 24 chr12 46652800 46653339 -74604191 + L1MA4 LINE L1 5486 6073 -227 1 940 243 0 0 0 chr12 46653516 46653543 -74603987 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 940 441 0 0 0 chr12 46653543 46653591 -74603939 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 940 221 376 11 0 chr12 46654264 46654357 -74603173 + L2a LINE L2 2813 2906 -513 1 940 828 309 30 97 chr12 46654457 46654859 -74602671 - MTE2a LTR MaLR -4 375 1 1 940 223 204 20 0 chr12 46654925 46654974 -74602556 + CT-rich Low_complexity Low_complexity 1 50 0 1 940 281 198 0 12 chr12 46654980 46655062 -74602468 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 940 241 176 42 42 chr12 46655065 46655136 -74602394 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 1 940 567 153 22 28 chr12 46655138 46655305 -74602225 + (TG)n Simple_repeat Simple_repeat 1 166 0 1 940 2534 167 112 84 chr12 46655305 46655973 -74601557 - RMER6C LTR ERVK 0 690 4 1 940 567 153 22 28 chr12 46655973 46655986 -74601544 + (TG)n Simple_repeat Simple_repeat 2 14 0 1 940 631 361 79 11 chr12 46656052 46656318 -74601212 - B4A SINE B4 0 292 9 1 940 456 314 68 19 chr12 46656320 46656583 -74600947 + L2a LINE L2 3111 3386 -40 1 940 723 236 29 133 chr12 46656698 46656827 -74600703 + MTD LTR MaLR 1 121 -298 1 940 3386 44 9 7 chr12 46656827 46657258 -74600272 + L1Md_F3 LINE L1 6151 6582 -2 1 940 723 236 29 133 chr12 46657258 46657368 -74600162 + MTD LTR MaLR 122 215 -204 1 940 660 229 0 0 chr12 46657368 46657534 -74599996 + GA-rich Low_complexity Low_complexity 2 167 0 1 940 485 269 79 65 chr12 46657857 46658072 -74599458 + RMER2 LTR ERV1 346 563 -4 1 940 329 216 13 13 chr12 46658076 46658151 -74599379 + MTD LTR MaLR 345 419 0 1 940 506 241 14 0 chr12 46658546 46658687 -74598843 - L1MA6 LINE L1 -74 6226 6084 1 940 262 294 58 14 chr12 46658809 46658947 -74598583 + L1MA6 LINE L1 5803 5946 -354 1 940 924 162 0 0 chr12 46660307 46660574 -74596956 + (TG)n Simple_repeat Simple_repeat 1 267 0 1 941 232 226 0 0 chr12 46662213 46662266 -74595264 + C-rich Low_complexity Low_complexity 1 53 0 1 941 216 0 0 0 chr12 46663521 46663545 -74593985 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 941 387 0 0 0 chr12 46663545 46663587 -74593943 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 941 481 327 107 45 chr12 46666030 46666449 -74591081 - L1MEf LINE L1 -3984 2216 1772 1 941 276 414 0 0 chr12 46666513 46666624 -74590906 + PB1 SINE Alu 10 120 -7 1 941 27 0 0 0 chr12 46666626 46666653 -74590877 + AT_rich Low_complexity Low_complexity 1 27 0 1 941 598 288 16 93 chr12 46666715 46667102 -74590428 - L1MEf LINE L1 -4658 1542 1186 1 941 181 350 118 35 chr12 46667827 46668055 -74589475 - MIR SINE MIR -12 250 4 2 941 233 375 117 17 chr12 46668100 46668339 -74589191 + L3 LINE CR1 2030 2292 -2197 2 941 226 366 111 74 chr12 46668950 46669139 -74588391 - B4 SINE B4 -14 278 83 2 941 227 116 214 14 chr12 46669155 46669225 -74588305 - Lx8 LINE L1 -7 7466 7383 2 941 7544 138 17 18 chr12 46669293 46671472 -74586058 + L1_Mus4 LINE L1 4464 6631 -5 2 941 343 267 0 0 chr12 46671536 46671611 -74585919 - B3 SINE B2 -10 206 132 2 941 206 302 11 55 chr12 46671774 46671865 -74585665 + L3 LINE CR1 3592 3678 -811 2 941 363 23 0 0 chr12 46671979 46672023 -74585507 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 941 2515 51 0 3 chr12 46672135 46672467 -74585063 - L1Md_F2 LINE L1 -64 6518 6188 2 941 278 20 82 0 chr12 46672464 46672513 -74585017 + L1Md_F2 LINE L1 6528 6580 -2 2 941 1665 194 100 22 chr12 46672513 46672872 -74584658 - MTC LTR MaLR -31 390 4 2 941 284 175 0 16 chr12 46673079 46673143 -74584387 + CT-rich Low_complexity Low_complexity 3 65 0 2 941 2172 124 14 95 chr12 46673495 46673915 -74583615 - L1_Mus3 LINE L1 0 6638 6253 2 941 1760 63 0 0 chr12 46673946 46674168 -74583362 - L1_Mus1 LINE L1 0 6567 6346 2 941 1981 113 120 31 chr12 46674298 46674689 -74582841 - Lx2 LINE L1 -21 6976 6551 2 941 1269 93 44 0 chr12 46674714 46674896 -74582634 - B2_Mm1t SINE B2 -2 191 2 2 941 216 423 71 4 chr12 46675239 46675507 -74582023 + L3 LINE CR1 3860 4145 -344 2 941 21 0 0 0 chr12 46675528 46675549 -74581981 + AT_rich Low_complexity Low_complexity 1 21 0 2 941 316 361 106 21 chr12 46675640 46675875 -74581655 + L3 LINE CR1 4235 4489 0 2 941 4066 139 11 11 chr12 46676720 46677374 -74580156 + Lx3B LINE L1 6320 6973 0 2 941 5852 63 0 26 chr12 46677486 46678255 -74579275 - L1Md_F2 LINE L1 -13 6569 5821 2 941 3128 179 96 20 chr12 46678322 46678491 -74579039 - L1_Mur3 LINE L1 -1067 4813 4631 2 941 366 91 0 0 chr12 46678491 46678546 -74578984 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 941 3128 179 96 20 chr12 46678546 46678869 -74578661 - L1_Mur3 LINE L1 -1250 4630 4277 2 941 228 86 0 0 chr12 46678869 46678904 -74578626 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 941 261 0 0 0 chr12 46678905 46678934 -74578596 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 941 297 0 0 0 chr12 46678934 46678966 -74578564 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 941 3128 179 96 20 chr12 46678966 46679259 -74578271 - L1_Mur3 LINE L1 -1604 4276 3968 2 941 4406 243 33 48 chr12 46679253 46680996 -74576534 + Lx7 LINE L1 5648 7309 -151 2 941 2089 216 36 62 chr12 46680999 46681578 -74575952 + RMER1C Other Other 774 1337 -5 2 941 495 289 0 0 chr12 46681573 46681729 -74575801 + Lx7 LINE L1 7305 7460 0 2 941 507 107 0 0 chr12 46681741 46681816 -74575714 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 2 941 963 159 0 0 chr12 46684059 46684229 -74573301 + GA-rich Low_complexity Low_complexity 2 171 0 2 941 1169 206 55 39 chr12 46684257 46684514 -74573016 + ORR1D1 LTR MaLR 1 261 -113 2 941 598 168 0 0 chr12 46684530 46684631 -74572899 + ORR1D1 LTR MaLR 6 106 -268 2 941 321 244 70 0 chr12 46684635 46684721 -74572809 + ORR1D1 LTR MaLR 291 382 -2 2 941 199 319 21 32 chr12 46686114 46686208 -74571322 - L3 LINE CR1 -4390 99 7 2 941 279 290 65 58 chr12 46686804 46686943 -74570587 - L2c LINE L2 -225 3162 3023 2 941 198 0 0 0 chr12 46687522 46687544 -74569986 + (CTG)n Simple_repeat Simple_repeat 2 23 0 2 941 405 24 18 0 chr12 46687725 46687781 -74569749 - L1Md_F2 LINE L1 -1236 5740 5684 2 941 5064 34 5 3 chr12 46687781 46688394 -74569136 + L1Md_F2 LINE L1 5969 6582 0 2 941 848 290 104 24 chr12 46688917 46689257 -74568273 - MTD LTR MaLR -31 388 38 2 941 296 281 22 104 chr12 46690135 46690270 -74567260 + RMER15 LTR ERVL 310 433 -142 2 941 1142 75 0 0 chr12 46690575 46690721 -74566809 - B1_Mus2 SINE Alu -1 146 1 2 941 5229 269 62 27 chr12 46690729 46692661 -74564869 - Lx7 LINE L1 -16 7680 5682 2 941 658 188 0 7 chr12 46692637 46692782 -74564748 - L1_Mur3 LINE L1 -878 5002 4859 2 941 180 0 0 0 chr12 46692782 46692802 -74564728 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2 941 6395 209 40 15 chr12 46692816 46694658 -74562872 - Lx5 LINE L1 0 7050 5159 2 941 486 0 0 0 chr12 46694821 46694875 -74562655 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 941 405 54 0 0 chr12 46695096 46695152 -74562378 + (TTAG)n Simple_repeat Simple_repeat 3 58 0 2 941 495 33 0 0 chr12 46696424 46696485 -74561045 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 941 227 29 0 54 chr12 46698214 46698251 -74559279 + B1_Mus2 SINE Alu 113 147 0 2 941 769 79 0 0 chr12 46698280 46698381 -74559149 + B2_Mm2 SINE B2 2 102 -93 2 941 195 100 0 0 chr12 46698384 46698414 -74559116 + (A)n Simple_repeat Simple_repeat 1 30 0 2 941 235 242 88 29 chr12 46699762 46699830 -74557700 - L2a LINE L2 0 3426 3355 2 941 1482 37 42 0 chr12 46699894 46700084 -74557446 - L1Md_F3 LINE L1 -14 6570 6373 2 941 191 114 0 28 chr12 46700193 46700229 -74557301 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2 941 3479 18 5 0 chr12 46701577 46701971 -74555559 - MTA_Mm LTR MaLR 0 396 1 2 941 9197 35 2 1 chr12 46701971 46703068 -74554462 - MTA_Mm-int LTR MaLR 0 1098 1 2 941 3471 18 5 0 chr12 46703068 46703462 -74554068 - MTA_Mm LTR MaLR 0 396 1 2 941 402 227 54 16 chr12 46704035 46704131 -74553399 - PB1D7 SINE Alu -20 107 9 2 941 429 20 0 0 chr12 46705365 46705415 -74552115 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 941 217 370 22 2 chr12 46705513 46705608 -74551922 + MIRb SINE MIR 31 123 -139 2 941 23 33 0 0 chr12 46707343 46707373 -74550157 + AT_rich Low_complexity Low_complexity 1 30 0 2 941 322 306 144 45 chr12 46709063 46709591 -74547939 - L1MA8 LINE L1 -264 6027 5448 2 941 532 62 12 12 chr12 46709796 46709878 -74547652 + (TC)n Simple_repeat Simple_repeat 1 82 0 2 941 561 64 0 0 chr12 46709878 46709956 -74547574 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 941 591 316 104 8 chr12 46710089 46710472 -74547058 - L1MA8 LINE L1 -1106 5034 4615 2 941 29 47 0 0 chr12 46711342 46711385 -74546145 + AT_rich Low_complexity Low_complexity 1 43 0 2 941 1161 120 77 0 chr12 46711895 46712078 -74545452 + URR1A DNA MER1_type 30 226 0 2 941 180 0 0 0 chr12 46712649 46712669 -74544861 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2 941 809 158 13 0 chr12 46712843 46712995 -74544535 + CT-rich Low_complexity Low_complexity 2 155 0 2 941 194 331 110 24 chr12 46713065 46713192 -74544338 - MIRb SINE MIR -14 254 117 2 941 244 181 42 0 chr12 46713412 46713484 -74544046 + (CATA)n Simple_repeat Simple_repeat 4 78 0 2 941 2015 107 26 7 chr12 46713484 46713794 -74543736 + IAPLTR2b LTR ERVK 1 316 -11 2 941 278 229 10 0 chr12 46713805 46713901 -74543629 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 941 286 311 84 90 chr12 46714043 46714365 -74543165 + MER33 DNA MER1_type 1 320 -4 2 941 1581 32 21 0 chr12 46714728 46714916 -74542614 + B2_Mm1a SINE B2 1 192 -1 2 941 26 0 0 0 chr12 46715601 46715627 -74541903 + AT_rich Low_complexity Low_complexity 1 26 0 2 941 234 289 44 0 chr12 46716713 46716803 -74540727 + MLT1F-int LTR MaLR 1381 1474 -15 2 941 381 305 25 25 chr12 46716935 46717079 -74540451 - Lx9 LINE L1 -314 7330 7190 2 941 612 27 0 0 chr12 46717079 46717153 -74540377 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 941 381 234 710 114 chr12 46717153 46717262 -74540268 - Lx9 LINE L1 -455 7189 7012 2 941 7039 88 22 18 chr12 46719024 46720302 -74537228 - L1_Mus3 LINE L1 -4 6634 5341 2 941 547 279 149 43 chr12 46720696 46721045 -74536485 - L1MA4 LINE L1 -371 5929 5544 2 941 356 285 93 14 chr12 46721083 46721222 -74536308 - RMER15 LTR ERVL -20 555 406 2 941 363 323 7 71 chr12 46722199 46722339 -74535191 - ID_B1 SINE B4 -9 215 85 2 941 222 328 63 32 chr12 46722886 46723012 -74534518 - MIRb SINE MIR -106 162 33 2 941 2141 131 68 18 chr12 46723938 46724320 -74533210 + RLTR9E LTR ERVK 9 409 0 2 941 26 30 0 0 chr12 46725489 46725522 -74532008 + AT_rich Low_complexity Low_complexity 1 33 0 2 941 482 0 17 0 chr12 46727066 46727124 -74530406 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 941 245 185 0 0 chr12 46727238 46727292 -74530238 + T-rich Low_complexity Low_complexity 1 54 0 2 941 1293 316 29 37 chr12 46727324 46727870 -74529660 + Lx9 LINE L1 6652 7193 -451 2 941 489 150 0 0 chr12 46728093 46728193 -74529337 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 941 432 55 0 0 chr12 46728248 46728303 -74529227 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 941 21 0 0 0 chr12 46728532 46728553 -74528977 + AT_rich Low_complexity Low_complexity 1 21 0 2 941 21 0 0 0 chr12 46728864 46728885 -74528645 + AT_rich Low_complexity Low_complexity 1 21 0 2 941 394 333 93 36 chr12 46729607 46730088 -74527442 + L1MEe LINE L1 2228 2718 -3428 2 941 570 83 10 30 chr12 46730336 46730435 -74527095 + MYSERV16_I-int LTR ERVK 2113 2209 -117 2 941 29 70 0 0 chr12 46730447 46730504 -74527026 + AT_rich Low_complexity Low_complexity 1 57 0 2 941 5675 99 11 24 chr12 46730774 46731441 -74526089 - L1_Mur1 LINE L1 -501 5385 4733 2 941 1841 189 11 14 chr12 46731441 46731806 -74525724 - Lx LINE L1 -7 6647 6284 2 941 5675 99 11 24 chr12 46731806 46732041 -74525489 - L1_Mur1 LINE L1 -1154 4732 4495 2 941 3627 75 25 0 chr12 46732039 46732517 -74525013 + L1_Mur1 LINE L1 5373 5862 -24 2 941 381 291 0 43 chr12 46732517 46732632 -74524898 + B4A SINE B4 175 284 -8 2 941 234 0 0 0 chr12 46732641 46732667 -74524863 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 941 231 250 150 9 chr12 46732681 46732794 -74524736 + L1MEc LINE L1 786 914 -5486 2 941 320 327 111 39 chr12 46732940 46733300 -74524230 + L1MEc LINE L1 1088 1473 -4927 2 941 35199 45 0 7 chr12 46733438 46738438 -74519092 + L1Md_F2 LINE L1 631 5586 -297 2 941 7936 50 3 0 chr12 46738439 46739431 -74518099 + L1Md_F2 LINE L1 5588 6582 0 2 941 826 314 102 16 chr12 46739644 46739958 -74517572 + MLT1G1 LTR MaLR 222 562 -17 2 941 730 314 66 38 chr12 46740249 46740722 -74516808 + L1MA7 LINE L1 5456 5941 -359 2 941 617 276 221 4 chr12 46740861 46741105 -74516425 - MTE2b LTR MaLR -1 378 82 2 941 201 74 0 0 chr12 46741323 46741350 -74516180 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 941 1176 62 0 0 chr12 46741351 46741495 -74516035 - B1_Mus2 SINE Alu -2 145 2 2 941 2247 85 35 0 chr12 46741934 46742251 -74515279 - L1Md_F2 LINE L1 -2 6580 6253 3 941 2379 63 47 16 chr12 46742442 46742764 -74514766 - L1_Mus2 LINE L1 -264 6302 5971 3 941 1503 106 9 69 chr12 46742764 46743176 -74514354 - RMER17A LTR ERVK 0 751 1 3 941 3113 49 16 0 chr12 46743176 46743640 -74513890 - L1_Mus2 LINE L1 -590 5976 5507 3 941 1199 48 0 7 chr12 46743802 46743950 -74513580 + B1_Mus2 SINE Alu 1 147 0 3 941 261 0 0 0 chr12 46743950 46743979 -74513551 + (A)n Simple_repeat Simple_repeat 1 29 0 3 941 1472 68 52 24 chr12 46744165 46744376 -74513154 - L1_Mus1 LINE L1 0 6567 6351 3 941 1817 92 0 0 chr12 46744376 46744616 -74512914 + L1_Mus1 LINE L1 6089 6328 -239 3 941 3013 68 24 7 chr12 46744742 46745156 -74512374 + BGLII LTR ERVK 1 421 0 3 941 1193 191 114 244 chr12 46745158 46745579 -74511951 + RMER6C LTR ERVK 4 444 -246 3 941 1304 48 0 0 chr12 46745579 46745745 -74511785 + L1_Mus1 LINE L1 6402 6567 0 3 941 1429 154 46 86 chr12 46745745 46746096 -74511434 + RMER6C LTR ERVK 408 689 -1 3 941 1032 250 156 15 chr12 46746139 46746453 -74511077 - MTD LTR MaLR -4 415 39 3 941 390 51 51 0 chr12 46746453 46746512 -74511018 - Lx LINE L1 -279 6375 6314 3 941 971 130 29 6 chr12 46746512 46746682 -74510848 + Lx LINE L1 6476 6649 -5 3 941 579 233 0 0 chr12 46746688 46746804 -74510726 - MTC LTR MaLR -301 120 5 3 941 1067 156 0 36 chr12 46746964 46747157 -74510373 + B2_Mm2 SINE B2 1 186 -9 3 941 23 0 0 0 chr12 46747384 46747407 -74510123 + AT_rich Low_complexity Low_complexity 1 23 0 3 941 249 359 22 0 chr12 46747702 46747794 -74509736 + Lx8 LINE L1 6491 6584 -889 3 941 1499 322 53 54 chr12 46747815 46748607 -74508923 + Lx8 LINE L1 6567 7357 -116 3 941 180 306 68 14 chr12 46749270 46749343 -74508187 - MIR SINE MIR -145 117 41 3 941 308 328 23 64 chr12 46749457 46749675 -74507855 - Charlie23a DNA MER1_type -1 338 130 3 941 391 247 88 6 chr12 46751283 46751443 -74506087 + ORR1D2 LTR MaLR 202 379 0 3 941 3128 275 41 47 chr12 46751444 46752422 -74505108 + ORR1D2-int LTR MaLR 2 973 -397 3 941 727 288 36 54 chr12 46752613 46752973 -74504557 + MTE2a LTR MaLR 50 402 -17 3 941 22 35 0 0 chr12 46753404 46753433 -74504097 + AT_rich Low_complexity Low_complexity 1 29 0 3 941 5082 73 19 16 chr12 46753622 46754349 -74503181 + Lx3_Mus LINE L1 5963 6691 -318 3 941 862 99 0 14 chr12 46754349 46754493 -74503037 + Lx3_Mus LINE L1 6868 7009 0 3 941 267 382 39 59 chr12 46755063 46755216 -74502314 - RSINE1 SINE B4 -4 161 12 3 941 414 326 144 26 chr12 46755401 46755885 -74501645 + L1MEc LINE L1 1112 1573 -4842 3 941 238 355 18 45 chr12 46756001 46756113 -74501417 + LTR81B LTR ERV1? 695 803 -590 3 941 3486 98 43 4 chr12 46756125 46756635 -74500895 + Lx3A LINE L1 6448 6977 -4 3 941 720 0 0 0 chr12 46756649 46756729 -74500801 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 3 941 257 169 26 0 chr12 46758186 46758263 -74499267 + (TCTCTG)n Simple_repeat Simple_repeat 1 79 0 3 941 303 335 222 32 chr12 46758515 46759168 -74498362 - L2 LINE L2 -645 2774 1998 3 941 2828 85 8 0 chr12 46759332 46759709 -74497821 - L1_Mus1 LINE L1 -81 5802 5423 3 941 5665 70 17 3 chr12 46759709 46760456 -74497074 + L1_Mus1 LINE L1 5810 6567 0 3 941 22 0 0 0 chr12 46761232 46761254 -74496276 + AT_rich Low_complexity Low_complexity 1 22 0 3 941 240 298 24 0 chr12 46761279 46761363 -74496167 - HAL1b LINE L1 -8 2001 1916 3 941 1600 40 118 31 chr12 46763158 46763387 -74494143 - L1Md_F2 LINE L1 0 6582 6334 3 941 530 279 62 28 chr12 46763530 46763674 -74493856 - RSINE1 SINE B4 -13 152 4 3 941 356 289 29 0 chr12 46763730 46763834 -74493696 + MER20 DNA MER1_type 113 219 0 3 941 688 282 13 6 chr12 46764571 46764728 -74492802 - B3 SINE B2 0 216 59 3 941 2702 128 2 0 chr12 46765158 46765566 -74491964 - Lx2 LINE L1 0 6997 6589 3 941 268 353 8 41 chr12 46765767 46765888 -74491642 + MLT2C1 LTR ERVL 396 512 -51 3 941 433 131 119 38 chr12 46765938 46766059 -74491471 + ORR1C1 LTR MaLR 39 172 -198 3 941 545 76 0 12 chr12 46766889 46766969 -74490561 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 941 289 256 0 25 chr12 46767007 46767087 -74490443 + GA-rich Low_complexity Low_complexity 3 80 0 3 941 349 333 24 24 chr12 46768641 46768764 -74488766 + MLT1A0 LTR MaLR 19 141 -224 3 941 359 395 7 71 chr12 46769177 46769474 -74488056 - B4A SINE B4 -14 278 1 3 941 475 263 38 12 chr12 46769654 46769829 -74487701 - B3A SINE B2 -29 187 1 3 941 194 156 0 22 chr12 46770167 46770213 -74487317 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 3 941 329 162 15 0 chr12 46770211 46770279 -74487251 + G-rich Low_complexity Low_complexity 6 74 0 3 941 1091 211 37 0 chr12 46775327 46775545 -74481985 - URR1A DNA MER1_type 0 226 1 3 941 34 0 0 0 chr12 46776009 46776043 -74481487 + AT_rich Low_complexity Low_complexity 1 34 0 3 941 197 326 137 39 chr12 46776122 46776275 -74481255 - L2c LINE L2 -44 3343 3176 3 941 293 302 55 28 chr12 46777788 46777897 -74479633 + B1F1 SINE Alu 6 117 -32 3 941 417 20 0 0 chr12 46777902 46777952 -74479578 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 941 300 333 164 5 chr12 46778887 46779101 -74478429 + MIR SINE MIR 3 250 -12 3 941 216 360 52 0 chr12 46779102 46779238 -74478292 - MIRb SINE MIR -47 221 79 3 941 295 169 45 34 chr12 46779899 46780077 -74477453 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 941 268 371 65 15 chr12 46780341 46780541 -74476989 - MIRc SINE MIR -6 262 53 3 941 494 322 15 80 chr12 46781785 46781984 -74475546 - B3A SINE B2 -11 187 2 3 941 264 272 99 139 chr12 46782104 46782356 -74475174 + L2c LINE L2 3141 3382 -5 3 941 3797 165 6 17 chr12 46783936 46784638 -74472892 - Lx LINE L1 -14 6640 5947 3 941 3577 135 12 0 chr12 46784639 46785315 -74472215 + Lx2 LINE L1 5266 5951 -1046 3 941 315 186 0 76 chr12 46787175 46787222 -74470308 + A-rich Low_complexity Low_complexity 6 48 0 3 941 378 0 0 0 chr12 46787222 46787264 -74470266 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 3 941 1170 54 0 0 chr12 46787264 46787411 -74470119 + B1_Mm SINE Alu 1 147 0 3 941 315 186 0 76 chr12 46787411 46787467 -74470063 + A-rich Low_complexity Low_complexity 49 101 0 3 941 653 186 0 31 chr12 46787717 46787845 -74469685 - ORR1C1 LTR MaLR -254 124 1 3 941 344 358 24 29 chr12 46787991 46788161 -74469369 - Lx8 LINE L1 -197 7276 7108 3 941 1694 229 13 34 chr12 46788334 46788781 -74468749 + RLTR42-int LTR ERVK 1105 1542 -3980 3 941 23 0 0 0 chr12 46788829 46788852 -74468678 + AT_rich Low_complexity Low_complexity 1 23 0 3 941 22 0 0 0 chr12 46790220 46790242 -74467288 + AT_rich Low_complexity Low_complexity 1 22 0 3 941 284 265 0 0 chr12 46790377 46790445 -74467085 + RLTR19-int LTR ERVK 4042 4109 -2028 3 941 1933 179 58 8 chr12 46790852 46791230 -74466300 + RMER10B LTR ERVL 1 397 -1 3 941 687 278 178 41 chr12 46791671 46792065 -74465465 + Lx8 LINE L1 6383 6830 -643 3 941 1682 201 56 25 chr12 46792071 46792126 -74465404 - ORR1C1 LTR MaLR 0 378 324 3 941 1541 210 27 6 chr12 46792126 46792461 -74465069 - Lx LINE L1 0 6654 6313 3 117 1682 201 56 25 chr12 46792461 46792763 -74464767 - ORR1C1 LTR MaLR -55 323 10 3 942 1201 190 65 12 chr12 46792763 46793008 -74464522 - L1_Mus4 LINE L1 -13 6623 6366 3 942 768 272 43 39 chr12 46793017 46793273 -74464257 + Lx9 LINE L1 6971 7227 -417 3 942 550 262 84 98 chr12 46793312 46793515 -74464015 - MER67D LTR ERV1 -300 214 15 3 942 7912 117 64 20 chr12 46793690 46794489 -74463041 - Lx LINE L1 -6 6648 5794 3 942 902 124 7 0 chr12 46794489 46794626 -74462904 + B1_Mus1 SINE Alu 2 139 -9 3 942 213 65 0 0 chr12 46794626 46794657 -74462873 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 942 7912 162 10 48 chr12 46794657 46795196 -74462334 - Lx LINE L1 -89 5794 5284 3 942 2214 93 6 3 chr12 46795196 46795510 -74462020 - L1_Mus3 LINE L1 -5 6633 6319 3 942 7912 162 10 48 chr12 46795510 46796437 -74461093 - Lx LINE L1 -600 5283 4386 3 942 288 312 84 68 chr12 46796510 46796833 -74460697 + L1MC4 LINE L1 7459 7786 -256 3 942 483 224 0 0 chr12 46796861 46797087 -74460443 + (TG)n Simple_repeat Simple_repeat 1 226 0 3 942 537 291 90 20 chr12 46797161 46797361 -74460169 - Lx8 LINE L1 -332 7141 6928 3 942 228 350 52 77 chr12 46799957 46800112 -74457418 + MER5B DNA MER1_type 2 152 -26 3 942 561 332 137 20 chr12 46800160 46800409 -74457121 - B4 SINE B4 -10 282 5 3 942 201 94 0 0 chr12 46800423 46800455 -74457075 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 942 23 0 0 0 chr12 46800479 46800502 -74457028 + AT_rich Low_complexity Low_complexity 1 23 0 3 942 2130 195 9 86 chr12 46800681 46801207 -74456323 - RLTR20A LTR ERVK -55 486 1 3 942 198 0 0 0 chr12 46802531 46802553 -74454977 + (T)n Simple_repeat Simple_repeat 1 22 0 3 942 1291 222 21 11 chr12 46802766 46803053 -74454477 - RLTR14 LTR ERV1 -92 290 1 3 942 259 344 16 24 chr12 46803199 46803324 -74454206 - LTR80B LTR ERVL -315 269 146 3 942 228 127 55 0 chr12 46803520 46803575 -74453955 + CT-rich Low_complexity Low_complexity 4 61 0 3 942 766 169 6 6 chr12 46803609 46803776 -74453754 + CT-rich Low_complexity Low_complexity 3 169 0 3 942 347 102 34 0 chr12 46803780 46803839 -74453691 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 3 942 265 247 49 12 chr12 46804434 46804516 -74453014 - HERV16-int LTR ERVL -3979 1017 933 3 942 367 286 55 21 chr12 46805358 46805627 -74451903 + L1MA6 LINE L1 6011 6285 -15 3 942 190 402 89 11 chr12 46806005 46806196 -74451334 + L2 LINE L2 2658 2863 -556 3 942 2537 100 5 8 chr12 46808785 46809159 -74448371 - L1_Mus3 LINE L1 -6 6632 6260 3 942 248 380 106 0 chr12 46810278 46810391 -74447139 + MIR SINE MIR 32 156 -106 3 942 180 0 0 0 chr12 46810607 46810627 -74446903 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 3 942 441 0 0 0 chr12 46810672 46810721 -74446809 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 3 942 863 136 0 0 chr12 46810751 46810876 -74446654 - B2_Mm2 SINE B2 -70 125 1 3 942 612 229 19 32 chr12 46811276 46811434 -74446096 - Lx6 LINE L1 -28 7432 7277 4 942 755 315 18 36 chr12 46811491 46811768 -74445762 + Lx8 LINE L1 6144 6415 -1058 4 942 22 0 0 0 chr12 46813000 46813022 -74444508 + AT_rich Low_complexity Low_complexity 1 22 0 4 942 1868 294 42 26 chr12 46814006 46814247 -74443283 - Lx5 LINE L1 -12 7038 6804 4 942 630 0 0 0 chr12 46814247 46814317 -74443213 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 942 1868 281 44 26 chr12 46814317 46815111 -74442419 - Lx5 LINE L1 -282 7178 6098 4 942 1055 316 114 33 chr12 46815491 46816103 -74441427 - Lx8 LINE L1 -6 7467 6806 4 942 569 241 47 27 chr12 46816138 46816287 -74441243 + MTD LTR MaLR 268 419 0 4 942 24 32 0 0 chr12 46816988 46817019 -74440511 + AT_rich Low_complexity Low_complexity 1 31 0 4 942 1805 179 14 3 chr12 46817091 46817438 -74440092 - Lx2B LINE L1 -857 6143 5793 4 942 323 130 0 0 chr12 46817441 46817487 -74440043 - Lx4B LINE L1 -1179 5879 5834 4 942 239 88 0 0 chr12 46817478 46817512 -74440018 + L1_Mur2 LINE L1 4766 4799 -1087 4 942 1195 86 12 0 chr12 46817506 46817669 -74439861 - L1_Mus3 LINE L1 -385 6253 6089 4 942 2397 87 58 3 chr12 46817663 46818010 -74439520 + L1_Mus3 LINE L1 6253 6618 -20 4 942 5064 174 59 2 chr12 46818025 46818976 -74438554 + L1_Mur2 LINE L1 4776 5780 -97 4 942 450 257 116 17 chr12 46820741 46820982 -74436548 - L1MA6 LINE L1 0 6300 6036 4 942 529 286 130 24 chr12 46821160 46821742 -74435788 - L1MA6 LINE L1 -673 5627 4984 4 942 498 118 0 0 chr12 46821765 46821858 -74435672 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 942 408 130 0 0 chr12 46821857 46821926 -74435604 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 942 544 313 148 21 chr12 46821930 46822416 -74435114 - L1MA6 LINE L1 -1191 4952 4405 4 942 1673 56 14 5 chr12 46824814 46825030 -74432500 - L1Md_F2 LINE L1 -13 6569 6352 4 942 193 297 62 52 chr12 46825652 46825748 -74431782 + MIR3 SINE MIR 87 183 -25 4 942 483 286 282 6 chr12 46826825 46827165 -74430365 - MLT1D LTR MaLR -49 456 22 4 942 247 277 0 15 chr12 46827194 46827260 -74430270 - MER58B DNA MER1_type -66 275 211 4 942 548 218 48 27 chr12 46827303 46827449 -74430081 - Lx7 LINE L1 0 7696 7548 4 942 195 42 0 0 chr12 46827453 46827477 -74430053 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 4 942 5848 111 53 23 chr12 46827477 46828424 -74429106 + Lx3_Mus LINE L1 6035 7009 0 4 942 214 186 0 0 chr12 46829177 46829220 -74428310 + A-rich Low_complexity Low_complexity 3 45 0 4 942 5409 131 38 12 chr12 46829255 46830145 -74427385 + Lx LINE L1 5742 6654 0 4 942 4330 251 87 30 chr12 46830160 46831348 -74426182 - Lx6 LINE L1 -211 7249 5994 4 942 470 347 121 39 chr12 46831438 46831801 -74425729 - LTR33B LTR ERVL -28 475 83 4 942 411 313 13 20 chr12 46832432 46832582 -74424948 + B1F SINE Alu 1 149 0 4 942 183 80 0 0 chr12 46832583 46832608 -74424922 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 4 942 387 313 118 20 chr12 46832899 46833052 -74424478 - MLT2B1 LTR ERVL -40 527 360 4 942 291 264 68 128 chr12 46833115 46833263 -74424267 - MLT2B1 LTR ERVL -415 139 1 4 942 26 30 0 0 chr12 46833617 46833650 -74423880 + AT_rich Low_complexity Low_complexity 1 33 0 4 942 638 224 101 7 chr12 46833651 46833799 -74423731 - MER58B DNA MER1_type -146 195 34 4 942 23 78 0 0 chr12 46833940 46833991 -74423539 + AT_rich Low_complexity Low_complexity 1 51 0 4 942 196 28 83 0 chr12 46834266 46834302 -74423228 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 942 4985 152 18 6 chr12 46836481 46837351 -74420179 - Lx2 LINE L1 -1 6996 6116 4 942 729 34 0 0 chr12 46837768 46837856 -74419674 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 942 280 150 110 24 chr12 46837856 46837938 -74419592 + Lx9 LINE L1 7517 7605 -39 4 942 299 246 9 0 chr12 46839936 46840046 -74417484 + GA-rich Low_complexity Low_complexity 4 114 0 4 942 653 297 104 16 chr12 46840068 46840376 -74417154 + L1ME4a LINE L1 5539 5873 -251 4 942 672 175 0 0 chr12 46840888 46841014 -74416516 + GA-rich Low_complexity Low_complexity 4 129 0 4 942 228 86 0 0 chr12 46842441 46842476 -74415054 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 942 399 132 0 13 chr12 46844806 46844878 -74412652 - Lx LINE L1 -179 6475 6421 4 942 964 159 15 10 chr12 46844879 46845076 -74412454 + Lx LINE L1 6455 6652 -2 4 942 762 78 0 0 chr12 46845957 46846072 -74411458 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 942 783 0 0 0 chr12 46846075 46846162 -74411368 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 4 942 24 0 0 0 chr12 46847771 46847795 -74409735 + AT_rich Low_complexity Low_complexity 1 24 0 4 942 2219 197 117 39 chr12 46847795 46848435 -74409095 - Lx9 LINE L1 0 7644 6955 4 942 22 35 0 0 chr12 46848540 46848569 -74408961 + AT_rich Low_complexity Low_complexity 1 29 0 4 942 4546 83 45 0 chr12 46849136 46849783 -74407747 + L1_Mus3 LINE L1 5963 6638 0 4 942 355 356 32 60 chr12 46850526 46850744 -74406786 - MIR SINE MIR -42 220 9 4 942 1599 158 7 24 chr12 46850949 46851247 -74406283 - L1_Mur2 LINE L1 -795 5082 4790 4 942 2598 126 63 5 chr12 46851267 46851628 -74405902 - RLTR31B_Mm LTR ERVK -86 471 103 4 942 1100 92 6 0 chr12 46851628 46851791 -74405739 + (TC)n Simple_repeat Simple_repeat 1 164 0 4 942 2598 126 63 5 chr12 46851791 46851874 -74405656 - RLTR31B_Mm LTR ERVK -455 102 3 4 942 4400 148 52 1 chr12 46851879 46852661 -74404869 - L1_Mur2 LINE L1 -1092 4785 3964 4 942 4848 143 83 23 chr12 46852643 46853577 -74403953 + Lx4A LINE L1 5519 6479 -579 4 942 855 92 8 0 chr12 46853587 46853717 -74403813 - L1_Mus2 LINE L1 0 6566 6436 4 942 2845 175 49 27 chr12 46853718 46854270 -74403260 + Lx4A LINE L1 6493 7056 -2 4 942 31123 77 33 3 chr12 46854921 46857271 -74400259 - L1Md_F2 LINE L1 -2 6580 4229 4 942 216 0 0 0 chr12 46857271 46857295 -74400235 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 942 1001 88 22 0 chr12 46857295 46857431 -74400099 - B1_Mus1 SINE Alu -8 140 2 4 942 31123 88 53 4 chr12 46857431 46861036 -74396494 - L1Md_F2 LINE L1 -1655 4228 364 4 942 315 0 0 0 chr12 46861911 46861946 -74395584 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 942 371 321 100 32 chr12 46863211 46863462 -74394068 + L1M5 LINE L1 3343 3610 -2536 4 942 269 295 151 21 chr12 46863561 46863984 -74393546 + L1M5 LINE L1 3742 4219 -1927 4 942 261 0 0 0 chr12 46865167 46865196 -74392334 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 942 205 200 26 13 chr12 46865262 46865338 -74392192 + GA-rich Low_complexity Low_complexity 5 81 0 4 942 370 259 38 15 chr12 46865341 46865474 -74392056 + (CAGAGA)n Simple_repeat Simple_repeat 3 138 0 4 942 507 69 0 0 chr12 46865481 46865553 -74391977 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 942 596 276 7 7 chr12 46865681 46865827 -74391703 + RMER1B Other Other 45 190 -876 4 942 225 324 43 92 chr12 46865827 46865990 -74391540 + MamGypLTR3 LTR Gypsy 274 428 -411 4 942 601 200 0 0 chr12 46866177 46866287 -74391243 - L1_Mur1 LINE L1 -6666 316 207 4 942 883 224 17 0 chr12 46866299 46866473 -74391057 + Lx6 LINE L1 7260 7436 -24 4 942 376 148 0 0 chr12 46866477 46866538 -74390992 + Lx6 LINE L1 7385 7445 -15 4 942 1571 203 14 23 chr12 46866768 46867121 -74390409 - RLTR15 LTR ERVK -4 355 6 4 942 1194 227 71 11 chr12 46867163 46867443 -74390087 + MTD LTR MaLR 1 297 -122 4 942 27 62 0 0 chr12 46867596 46867644 -74389886 + AT_rich Low_complexity Low_complexity 1 48 0 4 942 195 129 0 0 chr12 46867665 46867696 -74389834 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 4 942 687 319 6 0 chr12 46867697 46867879 -74389651 - B3 SINE B2 -30 186 4 4 942 307 355 62 39 chr12 46868072 46868092 -74389438 - L1M5 LINE L1 -1104 5042 5023 4 942 273 29 0 0 chr12 46868092 46868126 -74389404 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 4 942 307 355 62 39 chr12 46868126 46868363 -74389167 - L1M5 LINE L1 -1124 5022 4779 4 942 35770 35 0 78 chr12 46868696 46873780 -74383750 - L1Md_T LINE L1 0 6582 1961 4 942 9046 1 0 0 chr12 46873780 46874776 -74382754 + L1Md_A LINE L1 5587 6582 0 4 942 35770 82 48 52 chr12 46874776 46876408 -74381122 - L1Md_T LINE L1 -3923 1960 307 4 942 314 298 83 86 chr12 46876430 46876837 -74380693 - L1MD LINE L1 -1794 4352 3947 4 942 28 48 0 0 chr12 46876970 46877012 -74380518 + AT_rich Low_complexity Low_complexity 1 42 0 4 942 408 20 0 0 chr12 46877071 46877120 -74380410 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 942 3459 167 51 95 chr12 46877138 46877958 -74379572 + L1_Mur1 LINE L1 254 1037 -5945 4 942 3612 86 4 0 chr12 46877952 46878440 -74379090 - L1_Mus2 LINE L1 -306 6260 5771 4 942 27843 121 4 7 chr12 46878441 46882742 -74374788 - L1_Mus2 LINE L1 -280 5603 1311 4 942 3727 80 4 2 chr12 46882742 46883243 -74374287 - L1_Mus1 LINE L1 -1 6566 6065 4 942 27843 189 27 81 chr12 46883243 46884270 -74373260 - L1_Mus2 LINE L1 -5322 1312 332 4 942 313 256 89 24 chr12 46884262 46884386 -74373144 - L1VL2 LINE L1 -6142 193 62 4 942 5621 205 43 52 chr12 46884391 46885793 -74371737 - L1_Mur3 LINE L1 -1496 4384 2238 4 942 958 67 89 0 chr12 46885793 46885928 -74371602 - B1_Mm SINE Alu 0 147 1 4 942 5621 215 30 91 chr12 46885928 46885963 -74371567 - L1_Mur3 LINE L1 -3643 2237 2237 4 942 1076 81 0 6 chr12 46885963 46886138 -74371392 + (TTC)n Simple_repeat Simple_repeat 3 176 0 4 942 5621 215 30 91 chr12 46886138 46886164 -74371366 - L1_Mur3 LINE L1 -3643 2237 2237 4 942 3397 72 33 0 chr12 46886164 46886619 -74370911 - L1_Mus2 LINE L1 0 6566 6097 4 942 5621 217 30 87 chr12 46886619 46887760 -74369770 - L1_Mur3 LINE L1 -3643 2237 1108 4 942 689 276 54 101 chr12 46887860 46888267 -74369263 - L1_Mur3 LINE L1 -7037 691 304 4 942 1665 202 17 11 chr12 46888311 46888662 -74368868 + RLTR15 LTR ERVK 1 353 -6 4 942 380 294 150 26 chr12 46888680 46889019 -74368511 + L1MC4a LINE L1 6217 6597 -1285 4 942 708 242 179 13 chr12 46889304 46889606 -74367924 + L1MC4a LINE L1 7330 7681 -201 4 942 2814 117 36 7 chr12 46889968 46890417 -74367113 - L1_Mus3 LINE L1 -1 6637 6176 4 942 4136 99 2 7 chr12 46890416 46891014 -74366516 + L1_Mus1 LINE L1 5973 6567 0 4 942 617 301 26 39 chr12 46891052 46891284 -74366246 - Charlie21a DNA MER1_type -526 687 459 4 942 229 378 31 23 chr12 46892957 46893087 -74364443 + L2b LINE L2 3244 3374 -1 4 942 25 83 0 0 chr12 46893171 46893231 -74364299 + AT_rich Low_complexity Low_complexity 1 60 0 4 942 280 284 151 13 chr12 46893924 46894163 -74363367 - L1MA5 LINE L1 -61 6239 5968 4 942 413 266 122 25 chr12 46894176 46894380 -74363150 + L1MA5 LINE L1 5680 5903 -397 4 942 1342 259 84 18 chr12 46895540 46895933 -74361597 - MTD LTR MaLR 0 419 1 4 942 683 240 65 38 chr12 46896183 46896473 -74361057 + L1M2 LINE L1 3935 4232 -1911 4 942 306 306 0 35 chr12 46896470 46896585 -74360945 + L1M2 LINE L1 5573 5683 -617 4 942 270 278 152 7 chr12 46896808 46896953 -74360577 + L1MA6 LINE L1 5968 6133 -158 4 942 298 250 13 65 chr12 46896953 46897030 -74360500 + RSINE1 SINE B4 3 76 -89 4 942 1202 72 0 4 chr12 46897057 46897324 -74360206 + (CA)n Simple_repeat Simple_repeat 1 265 0 4 942 36 23 0 0 chr12 46897333 46897376 -74360154 + AT_rich Low_complexity Low_complexity 1 43 0 4 942 255 170 0 0 chr12 46897442 46897489 -74360041 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 942 181 398 97 9 chr12 46897957 46898071 -74359459 + L3 LINE CR1 4336 4459 -30 5 942 683 226 84 141 chr12 46899284 46899583 -74357947 + MT2A LTR ERVL 1 282 -251 5 942 441 66 0 0 chr12 46899588 46899649 -74357881 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 942 420 55 0 0 chr12 46899741 46899796 -74357734 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 942 5338 187 25 8 chr12 46899848 46900854 -74356676 + MERVL_2A-int LTR ERVL 1624 2646 -3115 5 942 236 191 0 29 chr12 46900856 46900926 -74356604 + T-rich Low_complexity Low_complexity 3 70 0 5 942 4138 218 46 11 chr12 46900968 46901733 -74355797 + MERVL_2A-int LTR ERVL 2658 3455 -2306 5 942 1950 155 28 0 chr12 46901733 46902050 -74355480 + ORR1A3 LTR MaLR 1 326 0 5 942 4138 218 46 11 chr12 46902050 46902157 -74355373 + MERVL_2A-int LTR ERVL 3456 3560 -2201 5 942 471 113 0 0 chr12 46902163 46902234 -74355296 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 942 2486 62 71 0 chr12 46902250 46902587 -74354943 - L1_Mus1 LINE L1 0 6567 6207 5 942 480 217 0 0 chr12 46902587 46902679 -74354851 + MERVL_2A-int LTR ERVL 4523 4614 -1147 5 942 850 225 84 80 chr12 46902750 46903097 -74354433 + MT2B LTR ERVL 84 561 -40 5 942 409 34 34 0 chr12 46903098 46903157 -74354373 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 942 244 140 0 57 chr12 46903157 46903210 -74354320 + MT2B LTR ERVL 535 584 0 5 942 352 298 63 40 chr12 46903456 46903631 -74353899 + ERVL-int LTR ERVL 4495 4673 -1084 5 942 1861 163 97 19 chr12 46903778 46904148 -74353382 - Lx2 LINE L1 0 6997 6599 5 942 441 273 36 102 chr12 46904724 46904778 -74352752 + B4 SINE B4 49 91 -201 5 942 811 97 0 0 chr12 46904778 46904892 -74352638 + B1_Mus1 SINE Alu 2 115 -33 5 942 830 270 50 57 chr12 46904891 46905174 -74352356 - MTE2a LTR MaLR -79 300 20 5 942 462 333 23 8 chr12 46905239 46905372 -74352158 - ID_B1 SINE B4 -84 140 6 5 942 438 331 14 20 chr12 46906450 46906598 -74350932 + B1F SINE Alu 1 147 -2 5 942 21 36 0 0 chr12 46906647 46906675 -74350855 + AT_rich Low_complexity Low_complexity 1 28 0 5 942 275 0 29 0 chr12 46906762 46906797 -74350733 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 942 8370 4 0 0 chr12 46907233 46908160 -74349370 + L1Md_A LINE L1 5656 6582 0 5 942 7541 137 6 2 chr12 46909170 46911251 -74346279 - L1_Mus4 LINE L1 -6 6630 4541 5 942 8309 197 152 101 chr12 46911544 46915219 -74342311 + Lx5 LINE L1 2050 5301 -585 5 942 1819 158 9 69 chr12 46915219 46915567 -74341963 - ORR1A4 LTR MaLR 0 329 3 5 942 8309 208 106 8 chr12 46915567 46917260 -74340270 + Lx5 LINE L1 5302 7043 -7 5 942 1019 302 85 32 chr12 46917290 46917759 -74339771 + Lx9 LINE L1 6771 7264 -380 5 942 369 43 0 0 chr12 46917778 46917825 -74339705 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 942 1196 61 0 0 chr12 46917837 46917984 -74339546 - B1_Mm SINE Alu 0 147 1 5 942 1575 299 105 25 chr12 46918186 46919245 -74338285 - Lx7 LINE L1 -1065 6631 5492 5 942 1090 232 65 22 chr12 46919242 46919612 -74337918 + L1_Mur3 LINE L1 4157 4542 -1338 5 942 665 304 35 18 chr12 46919799 46919970 -74337560 + B3A SINE B2 3 176 -22 5 942 417 340 31 6 chr12 46920262 46920422 -74337108 + MLT1L LTR MaLR 427 590 -20 5 942 241 26 0 50 chr12 46920774 46920814 -74336716 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 942 404 206 22 44 chr12 46920825 46921008 -74336522 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 5 942 23 33 0 0 chr12 46921874 46921904 -74335626 + AT_rich Low_complexity Low_complexity 1 30 0 5 942 522 0 0 0 chr12 46921904 46921962 -74335568 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 942 234 0 0 0 chr12 46922006 46922032 -74335498 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 5 942 1364 312 49 36 chr12 46922045 46922178 -74335352 - Lx6 LINE L1 -58 7402 7276 5 942 7613 41 2 0 chr12 46922178 46923104 -74334426 + L1Md_F2 LINE L1 5651 6578 -4 5 942 1364 312 49 36 chr12 46923104 46923442 -74334088 - Lx6 LINE L1 -185 7275 6925 5 942 2892 223 50 35 chr12 46923451 46923620 -74333910 - L1_Mur3 LINE L1 -7 5873 5723 5 117 1220 78 6 0 chr12 46923620 46923787 -74333743 - L1_Mus2 LINE L1 0 6566 6399 5 943 2892 223 50 35 chr12 46923787 46924381 -74333149 - L1_Mur3 LINE L1 -158 5722 5099 5 943 2795 212 1 52 chr12 46924379 46925069 -74332461 + L1_Mur3 LINE L1 4393 5047 -833 5 943 626 232 50 45 chr12 46927043 46927242 -74330288 + B3 SINE B2 1 200 -16 5 943 236 330 27 27 chr12 46927741 46927853 -74329677 + L2a LINE L2 2374 2485 -934 5 943 213 393 121 6 chr12 46927943 46928117 -74329413 + L2a LINE L2 2626 2819 -600 5 943 453 284 37 0 chr12 46928130 46928239 -74329291 + RSINE1 SINE B4 14 126 -39 5 943 510 96 0 0 chr12 46928239 46928312 -74329218 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 5 943 2218 90 9 32 chr12 46928312 46928656 -74328874 - L1_Mus4 LINE L1 0 6636 6301 5 943 289 368 100 66 chr12 46928704 46928864 -74328666 + L2a LINE L2 2814 2971 -448 5 943 293 24 49 0 chr12 46928864 46928905 -74328625 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 943 289 380 103 51 chr12 46928905 46929039 -74328491 + L2a LINE L2 2972 3114 -312 5 943 191 333 85 64 chr12 46935325 46935466 -74322064 + L2c LINE L2 2330 2473 -946 5 943 22 35 0 0 chr12 46935479 46935508 -74322022 + AT_rich Low_complexity Low_complexity 1 29 0 5 943 278 374 55 31 chr12 46936249 46936412 -74321118 + L2c LINE L2 2996 3162 -225 5 943 2550 221 50 28 chr12 46938279 46938913 -74318617 - RMER6C LTR ERVK -42 648 1 5 943 225 0 0 0 chr12 46939115 46939140 -74318390 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 943 208 246 71 71 chr12 46939579 46939706 -74317824 - L3 LINE CR1 -2284 2205 2079 5 943 21 0 0 0 chr12 46940000 46940021 -74317509 + AT_rich Low_complexity Low_complexity 1 21 0 5 943 465 28 28 14 chr12 46940818 46940890 -74316640 + (TTTTTG)n Simple_repeat Simple_repeat 2 74 0 5 943 1656 164 70 84 chr12 46941365 46941724 -74315806 - ORR1B1 LTR MaLR 0 394 41 5 943 197 33 33 0 chr12 46941738 46941768 -74315762 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 943 757 266 30 30 chr12 46941994 46942192 -74315338 - B3 SINE B2 -10 206 9 5 943 28 29 0 0 chr12 46942246 46942281 -74315249 + AT_rich Low_complexity Low_complexity 1 35 0 5 943 229 278 71 10 chr12 46942959 46943057 -74314473 - L1ME1 LINE L1 -182 5997 5894 5 943 236 179 35 18 chr12 46943248 46943305 -74314225 - L1ME1 LINE L1 -406 5773 5716 5 943 9822 141 21 3 chr12 46943399 46945907 -74311623 + L1_Mus4 LINE L1 4088 6630 -6 5 943 30 0 0 0 chr12 46945911 46945941 -74311589 + AT_rich Low_complexity Low_complexity 1 30 0 5 943 354 45 0 0 chr12 46946103 46946147 -74311383 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 943 1263 267 13 13 chr12 46946259 46946559 -74310971 - RMER15 LTR ERVL 0 575 276 5 943 28 0 0 0 chr12 46946794 46946822 -74310708 + AT_rich Low_complexity Low_complexity 1 28 0 5 943 588 285 78 66 chr12 46946869 46946946 -74310584 + MT2B LTR ERVL 1 77 -456 5 943 230 0 33 0 chr12 46946946 46946976 -74310554 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 943 767 287 69 40 chr12 46946976 46947259 -74310271 + MT2B LTR ERVL 78 526 -75 5 943 289 299 18 36 chr12 46947224 46947335 -74310195 + RMER12 LTR ERVK 738 846 -476 5 943 547 71 0 23 chr12 46947337 46947424 -74310106 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 943 259 213 13 51 chr12 46947437 46947516 -74310014 + MLT2B5 LTR ERVL 476 551 -4 5 943 223 195 0 24 chr12 46948458 46948500 -74309030 + B4 SINE B4 45 85 -207 5 943 181 91 44 22 chr12 46948522 46948567 -74308963 + (CAAAC)n Simple_repeat Simple_repeat 3 48 0 5 943 360 371 22 40 chr12 46948568 46948805 -74308725 + B4 SINE B4 62 292 0 5 943 235 293 36 12 chr12 46949031 46949114 -74308416 - L1M4b LINE L1 -2087 4919 4835 5 943 522 169 203 0 chr12 46949322 46949440 -74308090 + MTC LTR MaLR 3 144 -277 5 943 1612 189 3 0 chr12 46949454 46949739 -74307791 - ORR1A4 LTR MaLR -43 286 1 5 943 372 236 0 0 chr12 46949744 46949816 -74307714 - Lx9 LINE L1 -441 7203 7132 5 943 1309 244 20 10 chr12 46949827 46950125 -74307405 + Lx9 LINE L1 6521 6821 -823 5 943 958 268 17 0 chr12 46950151 46950382 -74307148 - Lx9 LINE L1 -224 7420 7186 5 943 424 311 0 7 chr12 46950383 46950532 -74306998 + Lx9 LINE L1 6826 6973 -671 5 943 260 351 88 0 chr12 46950826 46950940 -74306590 + B1F SINE Alu 21 144 -5 5 943 695 199 13 20 chr12 46951273 46951407 -74306123 + B1_Mur4 SINE Alu 3 137 -13 5 943 405 0 0 0 chr12 46951407 46951452 -74306078 + (CAAAC)n Simple_repeat Simple_repeat 3 47 0 5 943 695 199 13 20 chr12 46951452 46951466 -74306064 + B1_Mur4 SINE Alu 138 150 0 5 943 316 279 92 61 chr12 46951573 46951802 -74305728 - L1M4b LINE L1 -5113 2221 1986 5 943 837 343 31 41 chr12 46952259 46952626 -74304904 + MLT2D LTR ERVL 5 372 -42 5 943 481 324 59 0 chr12 46952626 46952830 -74304700 + B3 SINE B2 1 216 0 5 943 837 343 31 41 chr12 46952830 46952876 -74304654 + MLT2D LTR ERVL 373 414 0 5 943 24 0 0 0 chr12 46953016 46953040 -74304490 + AT_rich Low_complexity Low_complexity 1 24 0 5 943 6603 135 9 34 chr12 46953061 46954789 -74302741 + L1VL4 LINE L1 338 1953 -1606 5 943 6866 101 2 10 chr12 46954805 46955460 -74302070 - L1_Mus1 LINE L1 -1 6566 5919 5 943 2104 85 0 264 chr12 46955460 46955990 -74301540 + RLTR10 LTR ERVK 1 390 0 5 943 10861 97 58 5 chr12 46955990 46957639 -74299891 - L1_Mus1 LINE L1 -649 5918 4182 5 943 21246 143 10 9 chr12 46957637 46961360 -74296170 + L1_Mus3 LINE L1 2296 6015 -623 5 943 1877 90 40 30 chr12 46961360 46961657 -74295873 + L1Md_F2 LINE L1 6270 6569 -13 5 943 3765 110 8 63 chr12 46961657 46961829 -74295701 + L1_Mus3 LINE L1 6016 6182 -456 5 943 1302 255 77 94 chr12 46961827 46962074 -74295456 - L1_Rod LINE L1 -1882 3965 3722 5 943 1003 96 0 0 chr12 46962074 46962210 -74295320 + B1_Mus1 SINE Alu 2 137 -11 5 943 258 32 0 0 chr12 46962210 46962241 -74295289 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 943 281 47 0 23 chr12 46962250 46962294 -74295236 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 943 1302 255 77 94 chr12 46962294 46962818 -74294712 - L1_Rod LINE L1 -2126 3721 3198 5 943 728 205 63 46 chr12 46962816 46963033 -74294497 - Lx3A LINE L1 0 7009 6776 5 943 287 203 0 14 chr12 46963035 46963105 -74294425 - L1_Rod LINE L1 -2648 3199 3131 5 943 3340 218 57 55 chr12 46963289 46963370 -74294160 - L1_Rod LINE L1 -3561 2286 2218 5 943 369 0 0 0 chr12 46963370 46963411 -74294119 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 943 3340 218 57 55 chr12 46963411 46963894 -74293636 - L1_Rod LINE L1 -3630 2217 1735 5 943 215 0 67 0 chr12 46963894 46963924 -74293606 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 943 3340 239 57 37 chr12 46963924 46965062 -74292468 - L1_Rod LINE L1 -4113 1734 557 5 943 306 73 0 0 chr12 46965678 46965719 -74291811 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 943 387 0 0 0 chr12 46967669 46967712 -74289818 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 943 387 0 0 0 chr12 46967712 46967755 -74289775 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 943 3487 218 75 26 chr12 46967854 46968703 -74288827 - Lx5 LINE L1 -5 7045 6155 5 943 2293 184 41 19 chr12 46968699 46969186 -74288344 + Lx5 LINE L1 5614 6111 -939 5 943 824 281 145 3 chr12 46969524 46969806 -74287724 + MTE2a LTR MaLR 54 375 -4 6 943 1674 265 85 28 chr12 46969810 46970669 -74286861 + RCHARR1 DNA MER1_type 44 973 -1 6 943 31 0 0 0 chr12 46971327 46971358 -74286172 + AT_rich Low_complexity Low_complexity 1 31 0 6 943 26 74 0 0 chr12 46971691 46971745 -74285785 + AT_rich Low_complexity Low_complexity 1 54 0 6 943 2929 250 34 45 chr12 46971854 46972668 -74284862 + RLTR40 LTR ERVK 4 808 -9 6 943 1273 243 33 50 chr12 46972953 46973346 -74284184 - ORR1D1 LTR MaLR 0 394 1 6 943 1580 238 56 31 chr12 46973797 46974188 -74283342 + MTD LTR MaLR 13 413 -6 6 943 549 248 81 20 chr12 46976110 46976258 -74281272 - MTD LTR MaLR -5 414 258 6 943 464 72 14 0 chr12 46976280 46976349 -74281181 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 6 943 279 339 45 18 chr12 46978237 46978348 -74279182 - MIR SINE MIR 0 262 149 6 943 615 277 220 75 chr12 46978614 46979000 -74278530 - MT2A LTR ERVL 0 533 92 6 943 992 118 0 0 chr12 46979056 46979192 -74278338 + B1_Mus1 SINE Alu 4 139 -9 6 943 480 18 0 0 chr12 46979192 46979249 -74278281 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 943 566 210 16 32 chr12 46979274 46979397 -74278133 - MT2A LTR ERVL -412 121 1 6 943 9015 215 59 46 chr12 46979397 46979629 -74277901 - MERVL_2A-int LTR ERVL 0 5761 5593 6 943 324 0 0 0 chr12 46979629 46979665 -74277865 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 943 9015 215 59 46 chr12 46979665 46981638 -74275892 - MERVL_2A-int LTR ERVL -169 5592 3529 6 943 1780 180 65 41 chr12 46981627 46982044 -74275486 + MERVL_2A-int LTR ERVL 890 1316 -4445 6 943 198 0 0 0 chr12 46983095 46983117 -74274413 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 6 943 253 69 26 65 chr12 46983114 46983191 -74274339 + A-rich Low_complexity Low_complexity 1 74 0 6 943 328 354 94 0 chr12 46983397 46983524 -74274006 - B1F SINE Alu -8 141 3 6 943 781 314 9 88 chr12 46983650 46983992 -74273538 - Lx8 LINE L1 -253 7220 6906 6 943 531 0 0 0 chr12 46984374 46984433 -74273097 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 943 529 53 0 0 chr12 46984684 46984759 -74272771 - L1Md_F2 LINE L1 -4 6578 6504 6 943 648 298 48 4 chr12 46984761 46984990 -74272540 - Lx8 LINE L1 -561 6912 6674 6 943 222 300 0 0 chr12 46985842 46985892 -74271638 - MIR3 SINE MIR -34 174 125 6 943 186 43 0 0 chr12 46986505 46986528 -74271002 + (A)n Simple_repeat Simple_repeat 1 23 0 6 943 251 370 74 57 chr12 46989097 46989272 -74268258 - MLT1B LTR MaLR -28 362 185 6 943 8048 43 8 2 chr12 46989272 46990788 -74266742 - L1Md_F3 LINE L1 0 6584 5060 6 943 3878 112 38 9 chr12 46990791 46990889 -74266641 - L1_Mus4 LINE L1 -723 5913 5819 6 943 3398 62 0 16 chr12 46990889 46991333 -74266197 + L1Md_F2 LINE L1 6146 6582 0 6 943 3878 164 33 0 chr12 46991333 46991985 -74265545 - Lx LINE L1 -65 5818 5143 6 943 4101 127 32 97 chr12 46991984 46992798 -74264732 + Lx LINE L1 5892 6652 -2 6 943 299 279 35 0 chr12 46992818 46992904 -74264626 - MLT1B LTR MaLR -207 183 95 6 943 393 22 0 0 chr12 46993000 46993046 -74264484 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 943 703 235 15 0 chr12 46993197 46993333 -74264197 - B1_Mur3 SINE Alu 0 149 12 6 943 243 333 50 87 chr12 46993232 46993393 -74264137 - B4A SINE B4 -88 204 50 6 943 255 61 0 0 chr12 46993554 46993587 -74263943 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 943 1480 68 0 0 chr12 46994115 46994306 -74263224 + L1_Mus3 LINE L1 5833 6023 -615 6 943 241 222 24 12 chr12 46994536 46994618 -74262912 + T-rich Low_complexity Low_complexity 5 87 0 6 943 5130 68 4 68 chr12 46995598 46995644 -74261886 - L1_Mur1 LINE L1 -480 5406 5364 6 943 2812 27 0 0 chr12 46995644 46995974 -74261556 - L1Md_A LINE L1 0 6582 6253 6 943 5130 68 4 68 chr12 46995974 46996725 -74260805 - L1_Mur1 LINE L1 -523 5363 4660 6 943 2887 131 25 15 chr12 46996725 46997198 -74260332 + Lx3_Mus LINE L1 6507 6986 -23 6 943 225 0 0 0 chr12 46997198 46997223 -74260307 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6 943 333 0 0 0 chr12 46997366 46997403 -74260127 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 943 753 326 56 56 chr12 46998640 46998997 -74258533 + ORR1E LTR MaLR 1 357 -2 6 943 387 0 0 0 chr12 46999665 46999708 -74257822 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 943 867 170 112 11 chr12 46999813 46999991 -74257539 + ORR1B1 LTR MaLR 40 235 -159 6 943 405 145 14 0 chr12 47000004 47000073 -74257457 + ORR1A4 LTR MaLR 186 255 -74 1 943 195 80 39 39 chr12 47000943 47000995 -74256535 + T-rich Low_complexity Low_complexity 2 53 0 2 943 252 59 0 0 chr12 47003772 47003806 -74253724 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 943 280 288 0 0 chr12 47005261 47005334 -74252196 + RMER15-int LTR ERVL 571 643 -4356 4 943 557 272 28 223 chr12 47005352 47005882 -74251648 + RLTR11A2 LTR ERVK 1 427 -26 5 943 461 350 34 15 chr12 47005930 47006136 -74251394 + RMER15-int LTR ERVL 647 856 -4143 4 943 388 301 0 0 chr12 47007136 47007229 -74250301 - ORR1E LTR MaLR -261 98 6 6 943 483 198 21 0 chr12 47007218 47007314 -74250216 - MTEa-int LTR MaLR -37 1543 1446 7 943 3114 254 60 1 chr12 47007351 47008084 -74249446 - RMER1A Other Other 0 1030 255 8 943 371 361 16 16 chr12 47008107 47008228 -74249302 - RMER1B Other Other -643 423 303 9 943 5844 233 45 54 chr12 47008285 47009830 -74247700 + Lx7 LINE L1 6161 7692 -4 1 943 2204 336 97 50 chr12 47009861 47011161 -74246369 - MTEa-int LTR MaLR -219 1361 1 7 943 381 326 46 78 chr12 47011163 47011537 -74245993 - MTEa LTR MaLR -2 377 6 7 943 268 248 51 8 chr12 47011614 47011764 -74245766 - L1_Rod LINE L1 -557 5323 5129 1 943 444 82 0 0 chr12 47012678 47012739 -74244791 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 943 964 103 19 0 chr12 47012743 47012898 -74244632 + (TTTC)n Simple_repeat Simple_repeat 1 158 0 1 943 204 135 0 0 chr12 47014350 47014387 -74243143 + (T)n Simple_repeat Simple_repeat 1 37 0 1 943 3294 33 5 8 chr12 47014400 47014797 -74242733 + MTA_Mm LTR MaLR 1 396 0 1 943 7361 74 55 9 chr12 47014799 47015846 -74241684 + MTA_Mm-int LTR MaLR 3 1098 0 1 943 3244 31 8 2 chr12 47015846 47016240 -74241290 + MTA_Mm LTR MaLR 1 396 0 1 943 324 0 0 0 chr12 47017154 47017190 -74240340 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 943 267 303 132 14 chr12 47017950 47018094 -74239436 - MIR SINE MIR -86 176 16 1 943 809 281 86 19 chr12 47020466 47020734 -74236796 + RMER21B LTR ERV1 287 572 -270 1 943 1544 280 55 5 chr12 47021571 47021952 -74235578 - MTD LTR MaLR -2 417 18 1 943 423 165 0 0 chr12 47023114 47023199 -74234331 + T-rich Low_complexity Low_complexity 1 85 0 2 943 357 82 0 0 chr12 47024207 47024256 -74233274 + (CGTG)n Simple_repeat Simple_repeat 2 50 0 2 943 648 333 20 58 chr12 47024737 47024971 -74232559 + Lx8 LINE L1 6626 6857 -616 2 943 449 91 0 0 chr12 47024971 47025037 -74232493 - L1_Mus2 LINE L1 -5 6561 6496 2 943 648 333 20 58 chr12 47025037 47025095 -74232435 + Lx8 LINE L1 6858 6907 -566 2 943 606 274 64 23 chr12 47025133 47025305 -74232225 - B3 SINE B2 -37 179 1 2 943 1316 82 0 37 chr12 47025518 47025709 -74231821 + L1_Mus1 LINE L1 6384 6567 0 2 943 357 24 0 0 chr12 47026080 47026122 -74231408 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 943 4885 186 26 1 chr12 47026220 47027139 -74230391 - Lx4A LINE L1 -1 7057 6116 2 943 207 0 0 0 chr12 47027405 47027428 -74230102 + (A)n Simple_repeat Simple_repeat 1 23 0 2 943 207 0 0 0 chr12 47027749 47027772 -74229758 + (A)n Simple_repeat Simple_repeat 1 23 0 2 943 207 282 28 0 chr12 47028899 47028970 -74228560 + CT-rich Low_complexity Low_complexity 2 74 0 3 943 465 19 0 0 chr12 47029371 47029425 -74228105 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 943 315 0 0 0 chr12 47029425 47029459 -74228071 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 943 189 0 0 0 chr12 47030719 47030740 -74226790 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 943 188 200 18 0 chr12 47035558 47035613 -74221917 + A-rich Low_complexity Low_complexity 4 59 0 3 943 23 0 0 0 chr12 47036490 47036513 -74221017 + AT_rich Low_complexity Low_complexity 1 23 0 3 943 8726 109 18 8 chr12 47036514 47038708 -74218822 - Lx3A LINE L1 -3 6978 4764 3 943 228 111 0 0 chr12 47039772 47039808 -74217722 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 943 244 226 32 0 chr12 47040245 47040307 -74217223 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 943 1694 338 19 2 chr12 47040420 47041036 -74216494 + Lx9 LINE L1 6424 7050 -594 3 943 3458 55 41 0 chr12 47041597 47042037 -74215493 + L1Md_F3 LINE L1 6113 6570 -14 4 943 210 293 0 39 chr12 47042495 47042598 -74214932 + CT-rich Low_complexity Low_complexity 1 99 0 4 943 211 349 45 0 chr12 47042635 47042701 -74214829 - ID4 SINE ID -13 70 2 4 943 378 0 0 0 chr12 47042754 47042796 -74214734 + (TTA)n Simple_repeat Simple_repeat 2 43 0 4 943 252 0 0 0 chr12 47043198 47043226 -74214304 + (A)n Simple_repeat Simple_repeat 1 28 0 4 943 529 234 54 0 chr12 47046880 47046991 -74210539 - Lx9 LINE L1 -485 7159 7043 4 943 544 301 126 20 chr12 47047000 47047301 -74210229 + Lx9 LINE L1 7198 7520 -124 4 943 603 0 0 0 chr12 47047301 47047368 -74210162 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 4 943 544 301 126 20 chr12 47047368 47047470 -74210060 + Lx9 LINE L1 7521 7644 0 4 943 415 289 9 9 chr12 47049006 47049121 -74208409 + MER117 DNA MER1_type 1 115 -82 4 943 23 0 0 0 chr12 47050004 47050027 -74207503 + AT_rich Low_complexity Low_complexity 1 23 0 4 117 37141 37 0 0 chr12 47050182 47055433 -74202097 - L1Md_T LINE L1 0 6582 1331 4 944 13906 25 0 0 chr12 47055429 47057390 -74200140 - L1Md_T LINE L1 -348 6234 4274 5 944 39475 21 0 0 chr12 47057387 47062798 -74194732 - L1Md_A LINE L1 0 6582 1170 5 944 5538 159 24 31 chr12 47062804 47063919 -74193611 - L1Md_A LINE L1 -5411 1205 99 5 944 270 297 51 72 chr12 47063985 47064123 -74193407 + MIRc SINE MIR 24 158 -110 5 944 322 309 87 63 chr12 47064268 47064475 -74193055 + Charlie1a DNA MER1_type 24 235 -1220 5 944 181 0 0 65 chr12 47064611 47064642 -74192888 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 944 2923 99 7 0 chr12 47064656 47065061 -74192469 - L1_Mus1 LINE L1 0 6567 6160 5 944 1100 118 0 0 chr12 47065061 47065213 -74192317 + L1_Mus1 LINE L1 6015 6166 -401 5 944 296 175 16 0 chr12 47065257 47065320 -74192210 - Lx8 LINE L1 -1545 5928 5865 5 944 3165 316 43 27 chr12 47065329 47066645 -74190885 + Lx7 LINE L1 5978 7313 -383 5 944 438 20 0 0 chr12 47066689 47066740 -74190790 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 944 189 0 0 0 chr12 47066740 47066760 -74190770 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 944 360 0 0 0 chr12 47066792 47066832 -74190698 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 944 30 77 0 0 chr12 47067408 47067473 -74190057 + AT_rich Low_complexity Low_complexity 1 65 0 6 944 242 278 0 0 chr12 47067572 47067626 -74189904 + CT-rich Low_complexity Low_complexity 6 59 0 6 944 708 326 61 33 chr12 47067648 47068041 -74189489 - Lx9 LINE L1 -183 7461 7058 6 944 986 246 215 3 chr12 47068093 47068395 -74189135 + ORR1D1 LTR MaLR 1 366 -8 6 944 1027 320 39 17 chr12 47068403 47068730 -74188800 - Lx9 LINE L1 -960 6684 6347 6 944 387 0 0 0 chr12 47068730 47068773 -74188757 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 944 1027 361 52 29 chr12 47068773 47068912 -74188618 - Lx9 LINE L1 -1298 6346 6321 6 944 325 279 0 37 chr12 47069003 47069085 -74188445 - B3 SINE B2 -136 80 2 6 944 1858 182 52 6 chr12 47069093 47069441 -74188089 + ORR1B2 LTR MaLR 1 364 -3 6 944 230 379 32 32 chr12 47069946 47070104 -74187426 - L3 LINE CR1 -829 3660 3503 6 944 451 328 8 8 chr12 47072472 47072601 -74184929 + RSINE1 SINE B4 2 130 -35 6 944 351 125 0 0 chr12 47072605 47072677 -74184853 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 944 1472 288 28 81 chr12 47074338 47074909 -74182621 + MT2B LTR ERVL 1 541 -60 7 944 258 32 0 0 chr12 47075014 47075045 -74182485 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 944 279 208 0 0 chr12 47076067 47076115 -74181415 - B1F SINE Alu -89 60 13 7 944 369 0 0 0 chr12 47076348 47076389 -74181141 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 944 333 0 0 0 chr12 47076655 47076692 -74180838 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 7 944 2347 111 69 11 chr12 47076696 47077071 -74180459 - Lx3A LINE L1 -16 6965 6569 7 944 374 364 90 21 chr12 47077083 47077316 -74180214 + B4A SINE B4 38 286 -6 7 944 22 35 0 0 chr12 47077452 47077481 -74180049 + AT_rich Low_complexity Low_complexity 1 29 0 7 944 245 267 41 41 chr12 47080945 47081066 -74176464 - Lx8 LINE L1 0 7473 7353 7 944 375 23 0 0 chr12 47081952 47081996 -74175534 + (TTA)n Simple_repeat Simple_repeat 3 46 0 8 944 441 262 26 72 chr12 47082295 47082447 -74175083 + B1F SINE Alu 5 149 0 8 944 386 352 7 0 chr12 47082544 47082686 -74174844 - ID_B1 SINE B4 0 224 82 8 944 189 0 0 0 chr12 47084121 47084142 -74173388 + (TAA)n Simple_repeat Simple_repeat 1 21 0 8 944 880 231 15 20 chr12 47085330 47085533 -74171997 + U17 snRNA snRNA 3 204 -3 8 944 284 409 29 12 chr12 47085895 47086068 -74171462 - MIRc SINE MIR -4 264 89 8 944 994 297 12 70 chr12 47087016 47087418 -74170112 + MTEa LTR MaLR 1 379 0 8 944 905 280 5 5 chr12 47087974 47088182 -74169348 + B3 SINE B2 9 216 0 8 944 602 239 30 7 chr12 47088265 47088400 -74169130 + B1_Mur1 SINE Alu 2 139 -10 8 944 234 91 0 0 chr12 47088417 47088450 -74169080 + (ATGGTG)n Simple_repeat Simple_repeat 4 36 0 8 944 450 0 0 0 chr12 47091485 47091535 -74165995 + (TC)n Simple_repeat Simple_repeat 2 51 0 9 944 225 0 0 0 chr12 47091535 47091559 -74165971 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 944 429 360 0 52 chr12 47092298 47092453 -74165077 - B1F SINE Alu -2 147 1 9 944 766 280 18 75 chr12 47092684 47092962 -74164568 + RLTR26 LTR ERVK 169 430 -212 9 944 11128 73 1 5 chr12 47093264 47095024 -74162506 - L1Md_F2 LINE L1 -417 6165 4415 9 944 2244 72 47 16 chr12 47095024 47095346 -74162184 + L1Md_F2 LINE L1 6240 6571 -11 9 944 1204 265 49 51 chr12 47095808 47096257 -74161273 + Lx9 LINE L1 6925 7372 -272 9 944 248 213 76 38 chr12 47096316 47096448 -74161082 + Lx9 LINE L1 7506 7642 -2 9 944 5093 95 8 9 chr12 47097773 47098519 -74159011 - Lx3_Mus LINE L1 -8 7001 6257 9 944 312 62 20 40 chr12 47098520 47098570 -74158960 + Lx3_Mus LINE L1 5778 5826 -1183 9 944 850 88 0 9 chr12 47098558 47098672 -74158858 + L1_Mus3 LINE L1 6384 6496 -142 9 944 598 55 55 0 chr12 47098671 47098762 -74158768 + Lx3_Mus LINE L1 5966 6061 -948 9 944 243 0 0 0 chr12 47098811 47098838 -74158692 + (A)n Simple_repeat Simple_repeat 1 27 0 9 944 3148 44 0 8 chr12 47099922 47100311 -74157219 + L1_Mus1 LINE L1 6181 6566 -1 1 944 4060 140 24 3 chr12 47101651 47102402 -74155128 - Lx3_Mus LINE L1 -1037 5939 5182 9 944 685 162 113 6 chr12 47102400 47102493 -74155037 + Lx3C LINE L1 5931 6023 -953 1 944 507 17 0 0 chr12 47102493 47102553 -74154977 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 944 685 162 113 6 chr12 47102553 47102605 -74154925 + Lx3C LINE L1 6024 6094 -882 1 944 264 59 0 0 chr12 47102605 47102639 -74154891 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 944 685 162 113 6 chr12 47102639 47102660 -74154870 + Lx3C LINE L1 6095 6114 -862 1 944 3505 211 28 100 chr12 47102642 47102946 -74154584 + Lx3C LINE L1 5999 6307 -674 1 944 779 89 160 16 chr12 47102946 47103071 -74154459 + B1_Mm SINE Alu 5 147 0 1 944 4293 127 17 41 chr12 47103071 47103822 -74153708 + Lx3C LINE L1 6295 6978 -3 1 944 206 98 0 47 chr12 47103907 47103950 -74153580 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1 944 208 163 23 0 chr12 47104667 47104710 -74152820 + CT-rich Low_complexity Low_complexity 4 47 0 1 944 235 305 94 9 chr12 47105540 47105646 -74151884 - MER58A DNA MER1_type -109 115 1 1 944 351 0 0 0 chr12 47105837 47105876 -74151654 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 944 2792 59 8 0 chr12 47106478 47106836 -74150694 - L1_Mus2 LINE L1 -553 6013 5653 1 944 4199 71 2 2 chr12 47106837 47107385 -74150145 + L1_Mus2 LINE L1 6018 6565 -1 1 944 2215 109 8 54 chr12 47107423 47107792 -74149738 + Lx LINE L1 6303 6654 0 1 944 7316 69 4 12 chr12 47108955 47109923 -74147607 + L1Md_F2 LINE L1 5623 6582 0 1 944 24 0 0 0 chr12 47110458 47110482 -74147048 + AT_rich Low_complexity Low_complexity 1 24 0 1 944 18579 125 19 13 chr12 47110485 47114411 -74143119 - L1_Mus3 LINE L1 -6 6632 2687 1 944 3431 185 22 26 chr12 47114410 47114839 -74142691 - L1VL2 LINE L1 -5510 908 490 1 944 1505 143 20 84 chr12 47114839 47115183 -74142347 - RLTRETN_Mm LTR ERVK 0 322 1 1 944 3431 191 23 27 chr12 47115183 47115507 -74142023 - L1VL2 LINE L1 -5929 493 179 1 944 1978 260 127 31 chr12 47115695 47117150 -74140380 + Lx7 LINE L1 4929 6524 -1172 1 944 380 263 121 32 chr12 47117159 47117316 -74140214 + MER67C LTR ERV1 93 263 -448 1 944 372 303 171 68 chr12 47117335 47117615 -74139915 + MER67D LTR ERV1 200 508 -6 1 944 1167 183 23 0 chr12 47117719 47117855 -74139675 + URR1B DNA MER1_type 2 139 -86 1 944 4346 58 35 9 chr12 47117855 47118433 -74139097 + L1Md_F2 LINE L1 5988 6580 -2 1 944 1167 183 23 0 chr12 47118433 47118515 -74139015 + URR1B DNA MER1_type 140 224 -1 1 944 503 101 13 0 chr12 47119220 47119299 -74138231 + (CAA)n Simple_repeat Simple_repeat 2 81 0 1 944 25 31 0 0 chr12 47120223 47120255 -74137275 + AT_rich Low_complexity Low_complexity 1 32 0 1 944 1143 76 0 0 chr12 47120258 47120403 -74137127 + B1_Mus1 SINE Alu 4 148 0 1 944 335 157 36 29 chr12 47120441 47120579 -74136951 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 944 444 99 0 0 chr12 47121082 47121153 -74136377 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 944 266 132 19 0 chr12 47122955 47123008 -74134522 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 1 944 226 300 25 0 chr12 47123056 47123136 -74134394 + (TATG)n Simple_repeat Simple_repeat 3 84 0 1 944 322 357 61 36 chr12 47123152 47123431 -74134099 - B4A SINE B4 -6 286 1 1 944 21 0 0 0 chr12 47123798 47123819 -74133711 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 848 191 74 0 chr12 47123865 47124080 -74133450 + Lx9 LINE L1 6788 7018 -626 1 944 297 0 0 0 chr12 47124399 47124432 -74133098 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 944 3218 132 0 2 chr12 47125085 47125593 -74131937 + Lx2 LINE L1 6137 6643 -354 1 944 1479 96 14 5 chr12 47125593 47125813 -74131717 + Lx2 LINE L1 6775 6996 -1 1 944 4777 113 27 70 chr12 47126458 47127297 -74130233 + RLTR13B4 LTR ERVK 1 803 0 1 944 251 244 0 49 chr12 47127376 47127458 -74130072 + (CATATA)n Simple_repeat Simple_repeat 4 81 0 1 944 839 281 86 50 chr12 47127987 47128384 -74129146 - Lx8 LINE L1 -11 7462 7052 1 944 21 57 0 0 chr12 47129053 47129088 -74128442 + AT_rich Low_complexity Low_complexity 1 35 0 1 944 21 82 0 0 chr12 47129417 47129466 -74128064 + AT_rich Low_complexity Low_complexity 1 49 0 1 944 901 242 20 20 chr12 47129497 47129699 -74127831 - B3 SINE B2 -10 206 5 1 944 372 59 0 0 chr12 47130550 47130601 -74126929 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 944 208 313 42 25 chr12 47130735 47130853 -74126677 - L3b LINE CR1 -157 325 206 1 944 623 304 94 60 chr12 47131494 47131844 -74125686 + RMER13A LTR ERVK 2 363 -497 1 944 238 302 161 17 chr12 47131912 47132030 -74125500 + RMER20B LTR ERVK 459 593 -34 1 944 26 0 0 0 chr12 47132645 47132671 -74124859 + AT_rich Low_complexity Low_complexity 1 26 0 1 944 659 217 0 6 chr12 47132679 47132837 -74124693 + CT-rich Low_complexity Low_complexity 1 157 0 1 944 288 161 0 0 chr12 47132838 47132900 -74124630 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 944 15038 171 15 9 chr12 47132918 47133367 -74124163 + Lx2B LINE L1 2875 3325 -2552 1 944 279 0 0 0 chr12 47133367 47133398 -74124132 + (CTATA)n Simple_repeat Simple_repeat 1 31 0 1 944 15038 173 19 9 chr12 47133398 47136086 -74121444 + Lx2B LINE L1 3326 6107 -893 1 944 582 60 0 0 chr12 47136086 47136169 -74121361 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 944 477 0 0 0 chr12 47136169 47136221 -74121309 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 944 5071 209 104 17 chr12 47136221 47137046 -74120484 + Lx2B LINE L1 6108 7057 -1 1 944 429 314 104 25 chr12 47137711 47137917 -74119613 - MIRb SINE MIR -17 251 31 1 944 414 0 0 0 chr12 47138004 47138050 -74119480 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 944 352 345 59 33 chr12 47138324 47138639 -74118891 + MLT2B4 LTR ERVL 68 397 0 1 944 209 33 33 0 chr12 47139393 47139423 -74118107 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 944 195 42 0 0 chr12 47140504 47140528 -74117002 + (CATATA)n Simple_repeat Simple_repeat 3 26 0 1 944 369 0 0 0 chr12 47142115 47142156 -74115374 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 944 196 324 54 0 chr12 47142186 47142260 -74115270 - MIRc SINE MIR -121 147 70 1 944 274 318 12 12 chr12 47142260 47142346 -74115184 - B4A SINE B4 -100 192 107 1 944 291 204 19 0 chr12 47142357 47142411 -74115119 - B4 SINE B4 -237 55 1 1 944 369 0 0 0 chr12 47142647 47142688 -74114842 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 944 15539 42 3 2 chr12 47143018 47145239 -74112291 - L1Md_T LINE L1 -557 6440 3875 1 944 2471 79 0 3 chr12 47145235 47145590 -74111940 + L1_Mm LINE L1 4950 5303 -580 1 944 36674 15 4 54 chr12 47145591 47151586 -74105944 + L1Md_A LINE L1 1 5586 -297 1 944 8532 20 13 0 chr12 47151586 47152568 -74104962 + L1Md_A LINE L1 5588 6582 0 1 944 36674 10 0 63 chr12 47152568 47153137 -74104393 + L1Md_A LINE L1 5587 5844 -39 1 944 3695 61 31 8 chr12 47153137 47153619 -74103911 + L1Md_F2 LINE L1 6078 6570 -12 1 944 239 264 0 40 chr12 47153904 47153979 -74103551 - MLT1A1 LTR MaLR -12 396 325 1 944 3794 55 0 6 chr12 47154778 47155256 -74102274 + L1Md_F3 LINE L1 6096 6570 -14 1 944 753 281 18 12 chr12 47155339 47155508 -74102022 - B3A SINE B2 -28 170 1 1 944 21 36 0 0 chr12 47155853 47155881 -74101649 + AT_rich Low_complexity Low_complexity 1 28 0 1 944 471 18 0 0 chr12 47156281 47156337 -74101193 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 944 373 312 21 136 chr12 47156450 47156780 -74100750 - RMER10A LTR ERVL -25 417 126 1 944 21 0 0 0 chr12 47157356 47157377 -74100153 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 395 332 63 27 chr12 47157578 47157801 -74099729 + L1M5 LINE L1 4313 4543 -1603 1 944 244 208 0 0 chr12 47157865 47157918 -74099612 + CT-rich Low_complexity Low_complexity 2 54 0 1 944 580 294 68 21 chr12 47157997 47158188 -74099342 + B3 SINE B2 4 203 -13 1 944 288 0 0 0 chr12 47158502 47158534 -74098996 + (T)n Simple_repeat Simple_repeat 1 32 0 1 944 551 296 7 21 chr12 47158642 47158787 -74098743 + ID_B1 SINE B4 82 224 0 1 944 612 146 0 0 chr12 47158799 47158902 -74098628 + (CAA)n Simple_repeat Simple_repeat 3 105 0 1 944 315 365 0 0 chr12 47159606 47159691 -74097839 + RSINE1 SINE B4 9 93 -72 1 944 7158 205 37 5 chr12 47159696 47161599 -74095931 - L1VL4 LINE L1 -3024 2862 881 1 944 426 39 0 0 chr12 47162313 47162365 -74095165 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 944 6634 72 39 12 chr12 47162741 47163870 -74093660 - L1_Mus1 LINE L1 -1 6566 5404 1 944 5719 124 1 0 chr12 47163856 47164768 -74092762 + L1_Mus1 LINE L1 4497 5409 -474 1 944 5247 32 2 0 chr12 47164800 47165417 -74092113 - L1Md_T LINE L1 0 6582 5965 1 944 395 321 3 5 chr12 47165793 47165913 -74091617 + MLT1B LTR MaLR 244 375 -15 1 944 198 143 0 0 chr12 47166094 47166129 -74091401 + (TAA)n Simple_repeat Simple_repeat 1 35 0 1 944 198 191 0 0 chr12 47166246 47166293 -74091237 + A-rich Low_complexity Low_complexity 1 47 0 1 944 192 349 23 45 chr12 47168036 47168168 -74089362 - MIR SINE MIR -73 189 61 1 944 861 310 68 45 chr12 47168420 47168934 -74088596 + Lx9 LINE L1 6794 7346 -127 1 944 405 0 0 0 chr12 47168934 47168979 -74088551 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 944 288 120 0 0 chr12 47168979 47169028 -74088502 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 944 485 335 170 27 chr12 47169028 47169129 -74088401 + Lx9 LINE L1 7347 7465 -8 1 944 331 322 60 48 chr12 47170051 47170302 -74087228 + MER97c DNA MER1_type? 40 293 -797 1 944 375 255 53 0 chr12 47170796 47170890 -74086640 + PB1D10 SINE Alu 10 108 -9 1 944 1342 131 8 4 chr12 47171277 47171514 -74086016 - Lx LINE L1 0 6654 6417 1 944 1488 185 142 13 chr12 47171544 47171862 -74085668 - ORR1B2 LTR MaLR -8 359 1 1 944 300 301 142 17 chr12 47172123 47172299 -74085231 - LTR48 LTR ERV1 -3 641 444 1 944 327 278 190 54 chr12 47172447 47172668 -74084862 - LTR48 LTR ERV1 -443 344 94 1 944 10049 30 0 0 chr12 47172676 47174522 -74083008 - L1Md_T LINE L1 0 6582 4737 1 944 8018 23 0 0 chr12 47174519 47175468 -74082062 + L1Md_T LINE L1 3783 4731 -1152 1 944 337 148 37 12 chr12 47175566 47175594 -74081936 + polypyrimidine Low_complexity Low_complexity 58 87 0 1 944 360 0 0 0 chr12 47175594 47175634 -74081896 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 1 944 337 148 37 12 chr12 47175634 47175687 -74081843 + polypyrimidine Low_complexity Low_complexity 5 57 0 1 944 182 62 0 30 chr12 47177291 47177324 -74080206 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1 944 418 336 91 70 chr12 47177849 47178134 -74079396 + B4 SINE B4 1 291 -1 2 944 196 77 25 25 chr12 47178240 47178280 -74079250 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 944 267 93 0 0 chr12 47178294 47178337 -74079193 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 2 944 896 278 101 14 chr12 47178342 47178619 -74078911 - MTE2b LTR MaLR -78 301 1 2 944 194 347 10 48 chr12 47178620 47178723 -74078807 - MIR SINE MIR -123 139 41 2 944 206 245 0 0 chr12 47179388 47179441 -74078089 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 2 944 7731 75 2 1 chr12 47180095 47181188 -74076342 - L1_Mus1 LINE L1 -1 6566 5475 2 944 235 279 72 16 chr12 47181629 47181773 -74075757 - MIRm SINE MIR -46 216 79 2 944 1009 94 7 0 chr12 47183444 47183582 -74073948 + B1_Mus1 SINE Alu 1 139 -9 2 944 253 79 53 0 chr12 47185098 47185136 -74072394 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 2 944 257 125 18 0 chr12 47185137 47185193 -74072337 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 945 236 343 13 67 chr12 47187508 47187658 -74069872 - MLT1L LTR MaLR -188 422 281 2 945 225 300 43 22 chr12 47188118 47188210 -74069320 - L2a LINE L2 0 3426 3333 2 945 268 295 10 10 chr12 47189214 47189310 -74068220 - PB1D10 SINE Alu -19 98 3 2 945 263 343 0 0 chr12 47189328 47189395 -74068135 + BLACKJACK DNA AcHobo 421 487 -2457 2 945 1302 214 15 19 chr12 47189481 47189747 -74067783 + ORR1B2 LTR MaLR 103 367 0 2 945 219 114 0 0 chr12 47190614 47190649 -74066881 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 945 1775 294 147 25 chr12 47190724 47191649 -74065881 - Lx9 LINE L1 -289 7355 6318 2 945 236 316 79 17 chr12 47191761 47191938 -74065592 + BLACKJACK DNA AcHobo 2282 2469 -475 2 945 1177 310 73 50 chr12 47192077 47193207 -74064323 - L1MA5 LINE L1 -12 6288 5131 2 945 314 316 164 8 chr12 47193239 47193606 -74063924 - L1MA5 LINE L1 -1073 5070 4647 2 945 630 135 0 0 chr12 47193616 47193720 -74063810 + (TG)n Simple_repeat Simple_repeat 2 105 0 2 945 917 157 0 0 chr12 47193733 47193873 -74063657 - B1_Mus1 SINE Alu -3 145 6 2 945 747 268 29 24 chr12 47194019 47194229 -74063301 + B3 SINE B2 6 216 0 2 945 896 244 57 42 chr12 47194465 47194748 -74062782 - RLTR28 LTR ERVL -162 362 76 2 945 753 200 71 0 chr12 47195200 47195355 -74062175 - B3 SINE B2 -7 209 44 2 945 240 253 37 25 chr12 47195613 47195694 -74061836 + MLT1G3 LTR MaLR 509 590 -5 2 945 375 23 0 0 chr12 47196024 47196068 -74061462 + (CAT)n Simple_repeat Simple_repeat 3 46 0 2 945 889 335 21 30 chr12 47196073 47196445 -74061085 - Lx8 LINE L1 -769 6704 6336 2 945 941 295 63 21 chr12 47196494 47196872 -74060658 + Lx8 LINE L1 6787 7180 -293 2 945 222 191 0 0 chr12 47196872 47196919 -74060611 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 945 29 47 0 0 chr12 47197214 47197257 -74060273 + AT_rich Low_complexity Low_complexity 1 43 0 2 945 201 288 17 0 chr12 47197281 47197340 -74060190 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 2 945 3797 126 5 2 chr12 47198266 47198831 -74058699 - L1_Mus3 LINE L1 -21 5862 5296 2 945 5739 84 15 10 chr12 47198831 47199626 -74057904 + L1_Mus3 LINE L1 5836 6634 -4 2 945 265 341 211 19 chr12 47200115 47200343 -74057187 - L2 LINE L2 -523 2896 2627 2 945 507 73 0 0 chr12 47200343 47200411 -74057119 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 945 265 341 211 19 chr12 47200411 47200651 -74056879 - L2 LINE L2 -793 2626 2339 2 945 202 361 130 29 chr12 47200683 47200891 -74056639 - L2 LINE L2 -2173 1246 1018 2 945 227 317 72 19 chr12 47202562 47202771 -74054759 + L1MEc LINE L1 568 787 -5613 2 945 229 262 110 39 chr12 47202873 47203000 -74054530 + RMER6C LTR ERVK 82 217 -473 2 945 357 148 0 0 chr12 47203069 47203150 -74054380 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 945 232 290 139 39 chr12 47203269 47203527 -74054003 + L1MEc LINE L1 1161 1444 -4956 2 945 2106 148 3 0 chr12 47203800 47204152 -74053378 + Lx2A1 LINE L1 6656 7008 0 2 945 216 0 0 0 chr12 47204216 47204240 -74053290 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 2 945 27456 67 3 1 chr12 47204243 47208572 -74048958 - L1Md_F2 LINE L1 -14 6568 2231 2 945 24 0 0 0 chr12 47208718 47208742 -74048788 + AT_rich Low_complexity Low_complexity 1 24 0 2 945 372 314 72 8 chr12 47208840 47208965 -74048565 - B3 SINE B2 -2 214 82 2 945 232 246 181 39 chr12 47209077 47209204 -74048326 + L1MEc LINE L1 4724 4868 -1451 2 945 392 200 71 0 chr12 47209326 47209411 -74048119 - ORR1D2 LTR MaLR -279 91 1 2 945 373 360 130 0 chr12 47209754 47209954 -74047576 - Cheshire DNA MER1_type -2193 227 2 2 945 357 303 40 27 chr12 47209974 47210123 -74047407 + L1MEc LINE L1 5714 5864 -488 2 945 510 0 0 41 chr12 47210174 47210247 -74047283 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 945 597 28 0 0 chr12 47211255 47211326 -74046204 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 945 205 265 44 0 chr12 47211949 47212017 -74045513 + GA-rich Low_complexity Low_complexity 3 73 0 2 945 268 302 82 33 chr12 47212784 47213067 -74044463 - L1MA4 LINE L1 -258 6045 5755 2 945 21 0 0 0 chr12 47213144 47213165 -74044365 + AT_rich Low_complexity Low_complexity 1 21 0 2 945 342 355 84 20 chr12 47213245 47213427 -74044103 - B2_Mm2 SINE B2 -13 203 1 2 945 1499 217 35 12 chr12 47213977 47214581 -74042949 + Lx5 LINE L1 895 1453 -4427 2 945 8832 214 95 49 chr12 47214581 47214930 -74042600 + Lx5 LINE L1 1699 2064 -3816 2 945 714 55 0 0 chr12 47214930 47215021 -74042509 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 945 8832 214 95 49 chr12 47215021 47217116 -74040414 + Lx5 LINE L1 2065 4280 -1600 2 945 185 0 40 0 chr12 47217116 47217141 -74040389 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 945 8832 214 95 49 chr12 47217141 47217652 -74039878 + Lx5 LINE L1 4281 4791 -1089 2 945 458 211 29 66 chr12 47217657 47217794 -74039736 + Lx5 LINE L1 4985 5116 -764 2 945 2165 274 92 33 chr12 47217774 47219161 -74038369 + Lx5 LINE L1 5739 7440 -20 2 945 522 281 28 14 chr12 47219204 47219345 -74038185 - RSINE1 SINE B4 -20 145 3 2 945 469 228 123 0 chr12 47219383 47219497 -74038033 + B1_Mur4 SINE Alu 14 141 -9 2 945 255 206 25 99 chr12 47219549 47219630 -74037900 - L1M4 LINE L1 -729 5445 5371 2 945 252 240 196 45 chr12 47219750 47219929 -74037601 - L1M2 LINE L1 -942 5201 4996 2 945 280 277 58 35 chr12 47220014 47220100 -74037430 - B1F1 SINE Alu -61 88 1 2 945 280 277 45 73 chr12 47220125 47220304 -74037226 - L1M2 LINE L1 -1305 4838 4665 2 945 4752 139 1 30 chr12 47220394 47221216 -74036314 - Lx2 LINE L1 -1 6996 6199 2 945 469 322 77 16 chr12 47221287 47221533 -74035997 - Lx9 LINE L1 -245 7399 7139 2 945 324 0 0 0 chr12 47222045 47222081 -74035449 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 945 568 271 112 20 chr12 47222222 47222418 -74035112 + B3 SINE B2 2 215 -1 2 945 434 221 52 21 chr12 47222846 47222943 -74034587 + PB1D10 SINE Alu 18 117 0 2 945 567 267 131 10 chr12 47223463 47223868 -74033662 - L1M2 LINE L1 -506 5794 5341 2 945 225 312 107 45 chr12 47223917 47224095 -74033435 + Cheshire DNA MER1_type 43 231 -2189 2 945 696 12 0 0 chr12 47225138 47225219 -74032311 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 2 945 816 20 0 0 chr12 47226617 47226715 -74030815 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 945 366 23 0 0 chr12 47226715 47226757 -74030773 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 945 207 0 0 0 chr12 47227811 47227834 -74029696 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 945 22 70 0 0 chr12 47230239 47230282 -74027248 + AT_rich Low_complexity Low_complexity 1 43 0 2 945 300 53 0 0 chr12 47230343 47230381 -74027149 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 2 945 950 179 20 5 chr12 47231397 47231599 -74025931 + Lx3B LINE L1 6766 6970 -3 2 945 677 114 9 0 chr12 47231602 47231716 -74025814 + (GAA)n Simple_repeat Simple_repeat 3 117 0 2 945 597 28 0 0 chr12 47231739 47231810 -74025720 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 2 945 2487 154 48 11 chr12 47234365 47234823 -74022707 + Lx3B LINE L1 6489 6963 -10 2 945 1107 121 3 0 chr12 47234823 47235131 -74022399 + (GAA)n Simple_repeat Simple_repeat 1 309 0 2 945 3859 108 11 0 chr12 47236395 47236952 -74020578 - L1_Mus4 LINE L1 -6 6630 6068 2 945 578 41 14 0 chr12 47236964 47237037 -74020493 + L1_Mus4 LINE L1 5978 6051 -585 2 945 888 129 18 0 chr12 47237061 47237231 -74020299 + (TC)n Simple_repeat Simple_repeat 2 174 0 2 945 202 222 22 0 chr12 47237232 47237277 -74020253 + CT-rich Low_complexity Low_complexity 1 46 0 2 945 398 245 64 0 chr12 47237277 47237371 -74020159 - ID_B1 SINE B4 -3 221 122 2 945 200 200 18 0 chr12 47238305 47238360 -74019170 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 945 297 0 0 0 chr12 47238371 47238404 -74019126 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 945 883 307 99 11 chr12 47239767 47240129 -74017401 + L1MCa LINE L1 1 394 -6114 2 945 420 104 0 0 chr12 47240157 47240224 -74017306 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 945 1084 296 115 56 chr12 47240345 47240998 -74016532 + Lx9 LINE L1 6805 7481 -163 2 945 687 25 0 0 chr12 47240998 47241079 -74016451 + (TC)n Simple_repeat Simple_repeat 1 81 0 2 945 1084 296 115 56 chr12 47241079 47241098 -74016432 + Lx9 LINE L1 7482 7520 -124 2 945 591 15 0 0 chr12 47241098 47241166 -74016364 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 945 1084 296 115 56 chr12 47241166 47241260 -74016270 + Lx9 LINE L1 7521 7616 -28 2 945 476 278 23 0 chr12 47241515 47241648 -74015882 + L1MCa LINE L1 608 743 -5765 2 945 1713 199 38 33 chr12 47241690 47242058 -74015472 + ORR1C1 LTR MaLR 1 370 -8 2 945 445 295 0 8 chr12 47243495 47243625 -74013905 - RSINE1 SINE B4 -1 164 36 2 945 490 262 23 38 chr12 47244792 47244923 -74012607 + RSINE1 SINE B4 3 131 -34 2 945 306 106 0 0 chr12 47244926 47244973 -74012557 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 945 321 26 0 0 chr12 47244973 47245010 -74012520 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 945 748 267 108 68 chr12 47245097 47245495 -74012035 + MT2A LTR ERVL 1 468 -133 2 945 360 320 148 13 chr12 47245918 47246067 -74011463 + B3 SINE B2 35 203 -13 2 945 26 30 0 0 chr12 47246172 47246205 -74011325 + AT_rich Low_complexity Low_complexity 1 33 0 2 945 4937 137 19 2 chr12 47246205 47246995 -74010535 - Lx2A LINE L1 -59 6949 6147 2 945 189 0 0 0 chr12 47247698 47247719 -74009811 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 945 180 91 68 0 chr12 47248625 47248669 -74008861 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 945 241 345 104 35 chr12 47248987 47249188 -74008342 - MIRb SINE MIR -4 264 50 2 945 417 95 0 0 chr12 47250243 47250306 -74007224 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 945 683 176 14 2 chr12 47250474 47250604 -74006926 + ORR1A2 LTR MaLR 119 270 -97 3 945 776 266 110 43 chr12 47250638 47250937 -74006593 - ORR1D1 LTR MaLR -55 319 1 3 945 4298 242 68 35 chr12 47250937 47252264 -74005266 - ORR1D1-int LTR MaLR 0 1370 1 3 945 756 227 31 72 chr12 47252266 47252461 -74005069 - ORR1D1 LTR MaLR -2 372 186 3 945 428 35 17 0 chr12 47252468 47252526 -74005004 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 945 268 184 0 0 chr12 47252528 47252577 -74004953 - ORR1D1 LTR MaLR -284 90 42 3 945 183 156 0 0 chr12 47253418 47253450 -74004080 + A-rich Low_complexity Low_complexity 1 32 0 3 945 300 355 51 16 chr12 47253701 47253956 -74003574 - MER33 DNA MER1_type -52 272 9 3 945 181 0 69 0 chr12 47254232 47254261 -74003269 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 3 945 701 209 8 0 chr12 47254295 47254424 -74003106 - B3 SINE B2 -86 130 1 3 945 366 23 0 0 chr12 47254435 47254478 -74003052 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 3 945 405 273 21 90 chr12 47254981 47255126 -74002404 - B1_Mur1 SINE Alu -12 137 3 3 945 495 0 0 0 chr12 47255136 47255191 -74002339 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 945 261 0 0 0 chr12 47255200 47255229 -74002301 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 945 35778 36 5 9 chr12 47255550 47260732 -73996798 + L1Md_T LINE L1 441 5585 -298 3 945 8200 46 0 0 chr12 47260733 47261728 -73995802 + L1Md_T LINE L1 5587 6581 -1 3 945 357 291 99 34 chr12 47262039 47262239 -73995291 - L1MEg LINE L1 -879 1628 1355 3 945 1087 75 0 7 chr12 47262241 47262389 -73995141 - B1_Mus2 SINE Alu 0 147 1 3 945 436 321 80 29 chr12 47262735 47262873 -73994657 - B4 SINE B4 -2 290 146 3 945 1735 186 53 25 chr12 47262899 47263257 -73994273 - ORR1B1 LTR MaLR -3 391 24 3 945 24 32 0 0 chr12 47263463 47263494 -73994036 + AT_rich Low_complexity Low_complexity 1 31 0 3 945 7036 68 50 2 chr12 47263729 47265001 -73992529 - L1_Mus2 LINE L1 0 6566 5244 3 945 514 264 53 53 chr12 47265030 47265238 -73992292 + RMER13B LTR ERVK 697 904 -4 3 945 2807 117 2 5 chr12 47265290 47265712 -73991818 - BGLII LTR ERVK 0 421 1 3 945 786 225 79 7 chr12 47265713 47265990 -73991540 - MYSERV16_I-int LTR ERVK -1 2325 2029 3 945 497 61 0 43 chr12 47265990 47266059 -73991471 - MTB LTR MaLR 0 400 335 3 945 10687 69 11 3 chr12 47266059 47267477 -73990053 + L1Md_F3 LINE L1 4158 5585 -298 3 945 7705 57 10 1 chr12 47267478 47268465 -73989065 + L1Md_F3 LINE L1 5587 6582 -2 3 945 2458 96 14 0 chr12 47268470 47268823 -73988707 - MTB LTR MaLR -42 358 1 3 945 1863 223 76 82 chr12 47268823 47269517 -73988013 - RMER3D-int LTR ERVK -262 2580 1891 3 945 701 161 34 34 chr12 47269503 47269651 -73987879 - RMER3D-int LTR ERVK -1163 1679 1532 3 945 1503 203 6 16 chr12 47269686 47270006 -73987524 - RMER3D-int LTR ERVK -1309 1533 1217 3 945 909 116 0 0 chr12 47270011 47270140 -73987390 + BGLII LTR ERVK 293 421 0 3 945 381 123 0 0 chr12 47270171 47270236 -73987294 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 945 739 313 44 74 chr12 47270240 47270674 -73986856 - RMER13B LTR ERVK -4 904 484 3 945 38 0 0 0 chr12 47270674 47270712 -73986818 + AT_rich Low_complexity Low_complexity 1 38 0 3 945 297 0 0 0 chr12 47270831 47270864 -73986666 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 945 516 207 34 48 chr12 47271061 47271208 -73986322 - RMER17B LTR ERVK -813 145 1 3 945 212 171 0 0 chr12 47271223 47271258 -73986272 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 945 234 0 0 0 chr12 47273037 47273063 -73984467 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 945 399 344 0 51 chr12 47273063 47273124 -73984406 - B3A SINE B2 -73 125 68 3 945 5039 39 10 0 chr12 47273124 47273735 -73983795 + L1Md_F3 LINE L1 5954 6570 -14 3 945 399 344 0 51 chr12 47273735 47273801 -73983729 - B3A SINE B2 -131 67 3 3 945 310 301 10 10 chr12 47273801 47273905 -73983625 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 3 945 222 118 0 0 chr12 47274045 47274079 -73983451 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 945 351 0 0 0 chr12 47274523 47274562 -73982968 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 945 247 297 31 52 chr12 47275033 47275129 -73982401 + RMER15 LTR ERVL 3 96 -479 3 945 777 257 53 124 chr12 47275229 47275567 -73981963 + RMER15 LTR ERVL 27 340 -235 3 945 9569 95 35 4 chr12 47275594 47277543 -73979987 - Lx3_Mus LINE L1 0 7009 5006 3 945 994 224 89 0 chr12 47277543 47277780 -73979750 + RMER15 LTR ERVL 318 575 0 3 945 22 56 0 0 chr12 47278650 47278686 -73978844 + AT_rich Low_complexity Low_complexity 1 36 0 3 945 275 0 0 28 chr12 47279444 47279480 -73978050 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 945 711 308 45 36 chr12 47279724 47279946 -73977584 + B4A SINE B4 1 224 -68 3 945 185 103 16 65 chr12 47280393 47280455 -73977075 + A-rich Low_complexity Low_complexity 1 59 0 3 945 8071 44 3 0 chr12 47280533 47281789 -73975741 - L1Md_F2 LINE L1 -2 6580 5327 3 945 371 348 34 103 chr12 47281956 47282347 -73975183 + ORR1E LTR MaLR 1 370 0 3 945 221 82 48 32 chr12 47282751 47282814 -73974716 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 3 945 35 24 0 0 chr12 47283008 47283050 -73974480 + AT_rich Low_complexity Low_complexity 1 42 0 3 945 3667 161 35 9 chr12 47283050 47283704 -73973826 - Lx3B LINE L1 0 6973 6303 3 945 350 238 118 44 chr12 47283726 47283862 -73973668 - RMER15 LTR ERVL -429 146 1 3 945 730 253 12 87 chr12 47284330 47284535 -73972995 - RLTR20D LTR ERVK -31 537 208 3 945 3246 31 26 0 chr12 47284535 47284921 -73972609 + MTA_Mm LTR MaLR 1 396 0 3 945 730 289 21 87 chr12 47284921 47285089 -73972441 - RLTR20D LTR ERVK -361 207 51 3 945 432 0 0 0 chr12 47285104 47285152 -73972378 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 945 23 33 0 0 chr12 47285793 47285823 -73971707 + AT_rich Low_complexity Low_complexity 1 30 0 3 945 457 144 22 0 chr12 47285969 47286059 -73971471 + GA-rich Low_complexity Low_complexity 1 92 0 3 945 279 317 32 65 chr12 47286059 47286214 -73971316 + RMER12 LTR ERVK 701 850 -472 3 945 479 331 49 56 chr12 47286214 47286643 -73970887 - Lx9 LINE L1 -139 7505 7080 3 945 7892 58 1 7 chr12 47286652 47287736 -73969794 - L1Md_F2 LINE L1 -12 6570 5494 3 945 959 68 0 0 chr12 47288432 47288550 -73968980 - L1_Mm LINE L1 -240 5643 5526 3 945 1178 153 84 0 chr12 47288776 47288978 -73968552 - URR1A DNA MER1_type 0 226 8 3 945 23 0 0 0 chr12 47290052 47290075 -73967455 + AT_rich Low_complexity Low_complexity 1 23 0 3 945 302 288 22 119 chr12 47290268 47290402 -73967128 + MT2_Mm LTR ERVL 5 125 -408 3 945 342 266 9 60 chr12 47290414 47290530 -73967000 + MT2_Mm LTR ERVL 176 318 -283 3 945 686 269 33 84 chr12 47290532 47290877 -73966653 + MT2B LTR ERVL 176 541 -60 3 945 694 289 114 16 chr12 47290930 47291176 -73966354 - ORR1E LTR MaLR -87 272 3 3 945 428 180 89 10 chr12 47291333 47291434 -73966096 + Lx2 LINE L1 6886 6994 -3 3 945 277 103 0 0 chr12 47291682 47291721 -73965809 + RMER17C LTR ERVK 1 39 -371 3 945 1375 63 0 11 chr12 47291721 47291912 -73965618 + L1Md_F2 LINE L1 6360 6548 -34 3 945 1694 195 2 102 chr12 47291935 47292374 -73965156 + RMER17C LTR ERVK 16 410 0 3 945 21 0 0 0 chr12 47294204 47294225 -73963305 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 224 262 48 0 chr12 47294309 47294393 -73963137 + (CATA)n Simple_repeat Simple_repeat 3 90 0 3 945 25 65 0 0 chr12 47294577 47294623 -73962907 + AT_rich Low_complexity Low_complexity 1 46 0 3 945 338 246 164 30 chr12 47295512 47295646 -73961884 + RMER15 LTR ERVL 405 556 -19 3 945 1338 231 75 45 chr12 47296623 47296825 -73960705 - ORR1D1 LTR MaLR 0 374 160 3 945 558 0 0 0 chr12 47296825 47296887 -73960643 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 945 1338 231 75 45 chr12 47296887 47297042 -73960488 - ORR1D1 LTR MaLR -215 159 7 3 945 262 351 15 38 chr12 47297144 47297277 -73960253 + MLT1A LTR MaLR 189 318 -56 3 945 228 242 194 15 chr12 47297692 47297759 -73959771 + ID2 SINE ID 4 82 -1 3 945 524 194 8 0 chr12 47297834 47297963 -73959567 + (TA)n Simple_repeat Simple_repeat 2 131 0 3 945 1822 223 42 0 chr12 47299103 47299462 -73958068 + RLTR14 LTR ERV1 3 376 -6 3 945 195 42 0 0 chr12 47300090 47300114 -73957416 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 945 482 314 18 41 chr12 47300399 47300618 -73956912 - MLT1B LTR MaLR -164 226 13 3 945 378 270 145 0 chr12 47300649 47300801 -73956729 - MLT1B-int LTR MaLR -58 1313 1140 3 945 390 290 75 0 chr12 47302660 47302767 -73954763 - MER3 DNA MER1_type -93 116 2 3 945 1243 284 69 8 chr12 47302778 47302968 -73954562 + MTD LTR MaLR 5 196 -223 3 945 243 0 0 0 chr12 47302968 47302995 -73954535 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 3 945 1243 284 69 8 chr12 47302995 47303181 -73954349 + MTD LTR MaLR 197 404 -15 3 945 408 40 0 0 chr12 47303433 47303483 -73954047 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 945 716 282 11 28 chr12 47303490 47303669 -73953861 - B3 SINE B2 -40 176 1 3 945 220 205 0 0 chr12 47303694 47303733 -73953797 + T-rich Low_complexity Low_complexity 5 43 0 3 945 390 21 0 0 chr12 47304689 47304736 -73952794 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 945 666 230 0 0 chr12 47304924 47305098 -73952432 + (TAGA)n Simple_repeat Simple_repeat 1 174 0 3 945 25 0 0 0 chr12 47305799 47305824 -73951706 + AT_rich Low_complexity Low_complexity 1 25 0 3 945 186 167 0 0 chr12 47305825 47305861 -73951669 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 945 845 293 22 69 chr12 47307855 47308228 -73949302 + MER67C LTR ERV1 21 403 -308 3 945 229 352 154 32 chr12 47308643 47308954 -73948576 + L2 LINE L2 2445 2793 -626 3 945 4354 62 7 0 chr12 47309030 47309583 -73947947 - L1_Mus1 LINE L1 0 6567 6011 3 945 2288 21 25 7 chr12 47309640 47309924 -73947606 - L1Md_F3 LINE L1 -14 6570 6282 3 945 34 24 0 0 chr12 47310174 47310215 -73947315 + AT_rich Low_complexity Low_complexity 1 41 0 3 945 889 318 39 47 chr12 47310392 47310775 -73946755 + MLT1B LTR MaLR 6 385 -5 3 945 22 0 0 0 chr12 47310792 47310814 -73946716 + AT_rich Low_complexity Low_complexity 1 22 0 3 945 200 348 0 0 chr12 47312556 47312645 -73944885 + T-rich Low_complexity Low_complexity 4 92 0 3 945 1472 79 27 14 chr12 47313093 47313312 -73944218 - L1Md_F2 LINE L1 -11 6571 6350 3 945 1034 254 116 41 chr12 47314935 47315350 -73942180 - RMER5 LTR ERV1 -49 485 40 3 945 347 295 43 65 chr12 47315571 47315756 -73941774 + B3A SINE B2 9 189 -6 3 945 4637 112 58 1 chr12 47316191 47316882 -73940648 - Lx3_Mus LINE L1 -8 7001 6272 3 118 2207 107 59 54 chr12 47316882 47317289 -73940241 + Lx3_Mus LINE L1 5863 6271 -738 3 946 570 216 0 15 chr12 47317370 47317506 -73940024 - RMER17C LTR ERVK -238 172 39 4 946 260 230 159 87 chr12 47317579 47317687 -73939843 + MTD LTR MaLR 272 389 -30 4 946 265 0 49 24 chr12 47317687 47317728 -73939802 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 946 260 230 159 87 chr12 47317728 47317757 -73939773 + MTD LTR MaLR 390 419 0 4 946 270 0 0 0 chr12 47318166 47318196 -73939334 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 946 189 286 31 16 chr12 47318385 47318449 -73939081 - L2 LINE L2 -498 2921 2857 4 946 232 391 11 0 chr12 47318504 47318596 -73938934 - L2 LINE L2 -659 2760 2668 4 946 372 357 26 57 chr12 47318656 47318783 -73938747 - L2 LINE L2 -1069 2350 2227 4 946 1155 153 10 5 chr12 47318783 47318987 -73938543 + L1_Mus3 LINE L1 6434 6638 0 4 946 372 357 26 57 chr12 47318987 47319123 -73938407 - L2 LINE L2 -1193 2226 2095 4 946 235 317 25 118 chr12 47319742 47319903 -73937627 - L2 LINE L2 -1438 1981 1836 4 946 1497 205 135 32 chr12 47319977 47320354 -73937176 - MTD LTR MaLR 0 419 4 4 946 2332 64 10 3 chr12 47320485 47320797 -73936733 + L1Md_F2 LINE L1 6269 6582 0 4 946 1077 87 0 0 chr12 47320984 47321122 -73936408 + B1_Mus1 SINE Alu 1 138 -10 4 946 23 0 0 0 chr12 47321601 47321624 -73935906 + AT_rich Low_complexity Low_complexity 1 23 0 4 946 188 171 0 68 chr12 47322608 47322652 -73934878 + L3 LINE CR1 4272 4312 -177 4 946 22 0 0 0 chr12 47325236 47325258 -73932272 + AT_rich Low_complexity Low_complexity 1 22 0 4 946 1237 78 0 11 chr12 47326283 47326464 -73931066 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 946 284 139 0 0 chr12 47326537 47326580 -73930950 + (TATG)n Simple_repeat Simple_repeat 4 46 0 4 946 693 164 0 0 chr12 47326591 47326750 -73930780 + (TG)n Simple_repeat Simple_repeat 2 160 0 4 946 363 209 0 0 chr12 47326770 47326880 -73930650 + (TG)n Simple_repeat Simple_repeat 2 111 0 4 946 239 222 31 16 chr12 47327793 47327857 -73929673 + L1MC3 LINE L1 7709 7773 -12 4 946 202 364 48 20 chr12 47327928 47328074 -73929456 - MIRb SINE MIR -8 260 111 4 946 496 264 149 63 chr12 47329072 47329341 -73928189 - RLTR18 LTR ERVK -209 303 25 4 946 1103 168 117 0 chr12 47329706 47329903 -73927627 + URR1B DNA MER1_type 6 225 0 4 946 392 276 82 79 chr12 47330319 47330459 -73927071 - PB1D7 SINE Alu -176 138 1 4 946 333 237 87 9 chr12 47330515 47330630 -73926900 - Charlie1b DNA MER1_type -5 518 395 4 946 1167 250 15 0 chr12 47330630 47330894 -73926636 - Lx9 LINE L1 -413 7231 6964 4 946 819 235 54 54 chr12 47330878 47331117 -73926413 + Lx9 LINE L1 7245 7483 -161 4 946 2613 188 39 21 chr12 47331165 47331626 -73925904 + RLTR20D LTR ERVK 1 463 -105 4 946 423 0 0 0 chr12 47331626 47331673 -73925857 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 946 2613 188 39 21 chr12 47331673 47331722 -73925808 + RLTR20D LTR ERVK 464 518 -50 4 946 826 269 29 0 chr12 47332210 47332418 -73925112 - B3 SINE B2 -2 214 1 4 946 600 14 0 0 chr12 47333329 47333398 -73924132 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 946 255 269 124 0 chr12 47333936 47334137 -73923393 - L1MA8 LINE L1 -4 6287 6062 4 946 231 190 17 17 chr12 47334918 47334977 -73922553 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 946 577 105 30 8 chr12 47335062 47335092 -73922438 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 946 255 31 0 0 chr12 47335092 47335124 -73922406 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 946 577 105 30 8 chr12 47335124 47335227 -73922303 + (GA)n Simple_repeat Simple_repeat 2 108 0 4 946 448 259 48 12 chr12 47335430 47335565 -73921965 + B1_Mur2 SINE Alu 3 137 -12 4 946 323 353 62 37 chr12 47335843 47336087 -73921443 - RMER15 LTR ERVL -21 554 305 4 946 736 315 32 9 chr12 47336084 47336320 -73921210 - ID_B1 SINE B4 -41 251 9 4 946 423 0 0 0 chr12 47337682 47337729 -73919801 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 4 946 7101 55 1 0 chr12 47337776 47338710 -73918820 + L1Md_F3 LINE L1 4651 5585 -298 4 946 8274 36 3 1 chr12 47338711 47339706 -73917824 + L1Md_F3 LINE L1 5587 6583 -1 4 946 527 107 0 12 chr12 47339744 47339829 -73917701 + (GGGA)n Simple_repeat Simple_repeat 2 85 0 4 946 272 160 0 39 chr12 47339829 47339881 -73917649 + MT2B2 LTR ERVL 535 584 0 4 946 258 288 0 0 chr12 47339937 47340017 -73917513 + L1M4 LINE L1 5556 5635 -543 4 946 3418 38 2 0 chr12 47340130 47340525 -73917005 - MTA_Mm LTR MaLR 0 396 1 4 946 24 0 0 0 chr12 47340530 47340554 -73916976 + AT_rich Low_complexity Low_complexity 1 24 0 4 946 564 262 110 7 chr12 47340823 47341111 -73916419 - L1M4 LINE L1 -2106 4034 3709 4 946 4503 38 0 0 chr12 47341206 47341762 -73915768 - L1Md_F2 LINE L1 -182 6400 5845 4 946 339 323 54 46 chr12 47341791 47342164 -73915366 - L1M4 LINE L1 -2590 3556 3181 4 946 279 294 118 5 chr12 47342213 47342425 -73915105 + L1M5 LINE L1 3616 3851 -2295 4 946 1370 173 57 103 chr12 47342441 47342808 -73914722 + ORR1C2 LTR MaLR 3 352 -32 4 946 1202 107 87 10 chr12 47342810 47343018 -73914512 - L1Md_F2 LINE L1 -2 6580 6357 4 946 610 72 0 0 chr12 47343018 47343101 -73914429 + L1Md_F3 LINE L1 5930 6012 -572 4 946 7012 70 5 10 chr12 47343202 47344140 -73913390 + L1Md_F2 LINE L1 5641 6574 -8 4 946 266 332 35 35 chr12 47344156 47344226 -73913304 + L1M5 LINE L1 3949 4015 -2131 4 946 248 53 26 0 chr12 47344226 47344264 -73913266 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 946 266 332 35 35 chr12 47344264 47344390 -73913140 + L1M5 LINE L1 4016 4145 -2001 4 946 323 278 55 16 chr12 47344789 47344907 -73912623 - PB1 SINE Alu -28 121 2 4 946 406 272 142 47 chr12 47344947 47345159 -73912371 + L1M5 LINE L1 4614 4845 -1301 4 946 203 125 25 0 chr12 47345183 47345223 -73912307 + (TGG)n Simple_repeat Simple_repeat 1 41 0 4 946 438 20 0 0 chr12 47345223 47345274 -73912256 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 946 380 329 72 7 chr12 47345312 47345450 -73912080 - RSINE1 SINE B4 -7 158 12 4 946 1372 305 73 42 chr12 47345508 47346205 -73911325 - Lx8 LINE L1 -29 7444 6726 4 946 1620 175 98 39 chr12 47346259 47346678 -73910852 + ORR1A2 LTR MaLR 1 392 -2 4 946 902 230 71 18 chr12 47346678 47346895 -73910635 + ORR1D2 LTR MaLR 140 368 -2 4 946 851 320 77 10 chr12 47346897 47347301 -73910229 - Lx8 LINE L1 -846 6627 6197 4 946 687 230 7 7 chr12 47347319 47347459 -73910071 - B1_Mur1 SINE Alu -9 140 1 4 946 230 290 79 7 chr12 47347786 47347925 -73909605 - L1M5 LINE L1 -1072 5074 4926 4 946 361 294 39 19 chr12 47350370 47350474 -73907056 - PB1D10 SINE Alu -6 111 6 4 946 196 28 0 77 chr12 47350773 47350812 -73906718 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 4 946 241 274 73 0 chr12 47350974 47351098 -73906432 + Lx5 LINE L1 6918 7050 0 4 946 21 36 0 0 chr12 47351588 47351616 -73905914 + AT_rich Low_complexity Low_complexity 1 28 0 4 946 492 334 84 14 chr12 47351636 47352256 -73905274 + L1MC2 LINE L1 3648 4310 -1836 4 946 1942 75 10 28 chr12 47352433 47352722 -73904808 + L1_Mus1 LINE L1 6283 6566 -1 4 946 513 112 0 0 chr12 47352720 47352809 -73904721 + L1_Mus2 LINE L1 6464 6552 -14 4 946 937 42 0 0 chr12 47352810 47352928 -73904602 + L1_Mm LINE L1 4908 5025 -858 4 946 2696 39 11 154 chr12 47352928 47353381 -73904149 + RLTR10 LTR ERVK 1 388 -2 4 946 3826 43 25 2 chr12 47353418 47354305 -73903225 + RLTR10-int LTR ERVK 16 998 -989 4 946 250 297 39 15 chr12 47354369 47354499 -73903031 + RLTR10-int LTR ERVK 1462 1594 -5987 4 946 8280 23 1 0 chr12 47354582 47355574 -73901956 + RLTR10-int LTR ERVK 992 1984 -3 4 946 2685 42 11 154 chr12 47355576 47356029 -73901501 + RLTR10 LTR ERVK 1 388 -2 4 946 4320 58 0 0 chr12 47356030 47356597 -73900933 + L1Md_F3 LINE L1 5019 5585 -298 4 946 8219 41 0 3 chr12 47356598 47357596 -73899934 + L1Md_F3 LINE L1 5587 6581 -3 4 946 1186 302 101 37 chr12 47357648 47358729 -73898801 + L1MC2 LINE L1 4590 5738 -606 4 946 219 36 0 0 chr12 47358729 47358757 -73898773 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 946 1186 292 84 26 chr12 47358757 47359140 -73898390 + L1MC2 LINE L1 5739 6152 -192 4 946 313 347 76 8 chr12 47359181 47359300 -73898230 + B1F1 SINE Alu 23 149 0 4 946 227 152 22 0 chr12 47361083 47361129 -73896401 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 946 764 96 9 0 chr12 47361255 47361370 -73896160 + (TTTCC)n Simple_repeat Simple_repeat 1 116 0 4 946 1106 80 0 0 chr12 47361372 47361509 -73896021 - B1_Mus1 SINE Alu -11 137 1 4 946 210 342 13 13 chr12 47361900 47361977 -73895553 + B4 SINE B4 3 79 -213 4 946 529 257 121 19 chr12 47362009 47362215 -73895315 - RMER15 LTR ERVL -13 562 336 4 946 2940 53 0 0 chr12 47362794 47363155 -73894375 + L1Md_F3 LINE L1 6208 6568 -16 4 946 3010 49 51 0 chr12 47363298 47363689 -73893841 + RLTR10A LTR ERVK 1 411 0 4 946 24 0 0 0 chr12 47365634 47365658 -73891872 + AT_rich Low_complexity Low_complexity 1 24 0 4 946 5311 58 0 0 chr12 47365758 47366416 -73891114 + L1Md_F2 LINE L1 5913 6570 -12 4 946 6979 59 37 2 chr12 47366512 47367451 -73890079 - L1Md_F2 LINE L1 -6 6576 5605 4 946 423 0 0 0 chr12 47367581 47367628 -73889902 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 946 195 146 0 0 chr12 47367725 47367766 -73889764 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 946 237 350 24 8 chr12 47368467 47368591 -73888939 - Lx8 LINE L1 -188 7285 7160 4 946 351 245 146 10 chr12 47369731 47369834 -73887696 + PB1D10 SINE Alu 1 117 0 4 946 321 345 42 8 chr12 47369834 47369849 -73887681 + ID_B1 SINE B4 82 203 -21 4 946 465 66 0 0 chr12 47369861 47369922 -73887608 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 946 180 0 0 0 chr12 47370968 47370988 -73886542 + (A)n Simple_repeat Simple_repeat 1 20 0 4 946 3141 21 2 106 chr12 47371474 47371909 -73885621 + RLTR10 LTR ERVK 1 390 0 4 946 15154 31 32 10 chr12 47371911 47373851 -73883679 + RLTR10-int LTR ERVK 3 1984 -3 4 946 3122 23 2 106 chr12 47373853 47374288 -73883242 + RLTR10 LTR ERVK 1 390 0 4 946 33190 69 2 6 chr12 47375352 47381620 -73875910 - L1Md_F2 LINE L1 0 6585 247 4 946 532 55 10 81 chr12 47381763 47381862 -73875668 + L1Md_F2 LINE L1 6487 6578 -4 4 946 282 29 0 0 chr12 47381885 47381920 -73875610 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 946 321 352 103 53 chr12 47381920 47382202 -73875328 - HAL1-3A_ME LINE L1 -503 2355 2060 4 946 180 130 0 69 chr12 47382204 47382262 -73875268 + T-rich Low_complexity Low_complexity 5 58 0 4 946 362 189 84 0 chr12 47382308 47382403 -73875127 - Lx9 LINE L1 -8 7636 7534 4 946 186 43 0 0 chr12 47382410 47382433 -73875097 + (CTG)n Simple_repeat Simple_repeat 1 23 0 4 946 360 0 0 0 chr12 47382433 47382473 -73875057 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 946 804 195 49 36 chr12 47382473 47382696 -73874834 - Lx9 LINE L1 -168 7476 7251 4 946 628 197 131 7 chr12 47382711 47382864 -73874666 + Lx9 LINE L1 6792 6963 -681 4 946 3319 232 36 43 chr12 47383245 47384234 -73873296 + RMER1B Other Other 50 1066 0 4 946 378 0 0 0 chr12 47384564 47384606 -73872924 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 946 661 203 20 27 chr12 47386536 47386683 -73870847 - B1_Mus1 SINE Alu -2 146 1 5 946 21 0 0 0 chr12 47386987 47387008 -73870522 + AT_rich Low_complexity Low_complexity 1 21 0 5 946 534 327 65 13 chr12 47387393 47387548 -73869982 - RSINE1 SINE B4 0 165 3 5 946 942 240 16 0 chr12 47388656 47388910 -73868620 + L1_Mur3 LINE L1 1033 1290 -6422 5 946 1851 297 90 16 chr12 47388911 47389656 -73867874 + L1_Mur3 LINE L1 206 1005 -6723 5 946 276 30 0 0 chr12 47389748 47389781 -73867749 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 946 201 146 0 0 chr12 47390058 47390106 -73867424 + (A)n Simple_repeat Simple_repeat 1 48 0 5 946 971 227 87 60 chr12 47390271 47390718 -73866812 + L1_Mur3 LINE L1 998 1427 -4453 5 946 441 0 0 0 chr12 47390718 47390767 -73866763 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 946 634 201 163 51 chr12 47390767 47390801 -73866729 + L1_Mur3 LINE L1 1428 1488 -4392 5 946 2746 145 69 11 chr12 47390825 47391347 -73866183 + L1_Mur1 LINE L1 3536 4087 -1799 5 946 689 305 55 27 chr12 47391568 47391824 -73865706 + Lx8 LINE L1 6580 6842 -631 5 946 1546 155 40 108 chr12 47391831 47392156 -73865374 - RLTR18 LTR ERVK -2 614 312 5 946 1019 324 75 37 chr12 47392158 47392773 -73864757 + RMER15-int LTR ERVL 1012 1649 -3350 5 946 33506 107 18 13 chr12 47394098 47400417 -73857113 - L1Md_F2 LINE L1 -42 6540 217 5 946 321 135 0 0 chr12 47400481 47400533 -73856997 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 946 938 328 35 13 chr12 47401526 47401903 -73855627 + Lx8 LINE L1 6532 6916 -557 5 946 1028 117 0 6 chr12 47403151 47403315 -73854215 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 5 946 235 398 75 44 chr12 47403586 47403946 -73853584 + MLT1I LTR MaLR 38 408 -3 5 946 600 185 0 0 chr12 47405114 47405271 -73852259 + (TG)n Simple_repeat Simple_repeat 1 157 0 5 946 387 0 0 0 chr12 47406874 47406917 -73850613 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 946 205 246 17 34 chr12 47407461 47407520 -73850010 + GA-rich Low_complexity Low_complexity 3 60 0 5 946 855 280 32 40 chr12 47408291 47408637 -73848893 - RLTR15 LTR ERVK -16 343 1 5 946 752 344 107 35 chr12 47409486 47409965 -73847565 + MT2A LTR ERVL 2 514 -19 5 946 332 222 9 44 chr12 47410492 47410605 -73846925 + CT-rich Low_complexity Low_complexity 4 112 0 5 946 32 81 0 0 chr12 47410983 47411057 -73846473 + AT_rich Low_complexity Low_complexity 1 74 0 5 946 550 31 0 0 chr12 47412078 47412143 -73845387 - L1Md_A LINE L1 -569 6013 5949 5 946 952 45 0 0 chr12 47412143 47412276 -73845254 + L1Md_T LINE L1 6450 6582 0 5 946 213 355 18 0 chr12 47412396 47412506 -73845024 + (TATG)n Simple_repeat Simple_repeat 4 115 0 5 946 254 312 94 38 chr12 47412552 47412765 -73844765 + RLTR21 LTR ERVK 1082 1306 -266 5 946 453 145 32 52 chr12 47412936 47413113 -73844417 - Lx2A LINE L1 -1 7007 6853 5 946 538 304 58 75 chr12 47413808 47414115 -73843415 + B4 SINE B4 7 287 -5 5 946 412 118 32 32 chr12 47414120 47414243 -73843287 + (CAGAGA)n Simple_repeat Simple_repeat 4 126 0 5 946 284 264 17 76 chr12 47414776 47414895 -73842635 - Lx7 LINE L1 -21 7675 7564 5 946 1531 207 67 35 chr12 47415214 47415721 -73841809 + Lx4B LINE L1 6464 6975 -1 5 946 8228 35 7 0 chr12 47415882 47416842 -73840688 - L1Md_F3 LINE L1 -2 6582 5621 5 946 198 0 0 0 chr12 47416842 47416864 -73840666 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 946 8228 61 13 0 chr12 47416864 47417025 -73840505 - L1Md_F3 LINE L1 -263 5620 5455 5 946 27 0 0 0 chr12 47417329 47417356 -73840174 + AT_rich Low_complexity Low_complexity 1 27 0 5 946 25 51 0 0 chr12 47417408 47417447 -73840083 + AT_rich Low_complexity Low_complexity 1 39 0 5 946 2038 221 31 10 chr12 47417447 47417928 -73839602 - RMER5 LTR ERV1 -43 491 1 5 946 333 361 86 33 chr12 47418805 47418957 -73838573 - RSINE1 SINE B4 0 165 6 5 946 2670 114 12 32 chr12 47419540 47419949 -73837581 - Lx2 LINE L1 0 6997 6597 5 946 255 307 114 51 chr12 47420860 47421035 -73836495 + MIRb SINE MIR 4 189 -79 5 946 512 288 27 8 chr12 47422856 47423017 -73834513 + ID_B1 SINE B4 82 246 -46 5 946 621 297 7 0 chr12 47423154 47423302 -73834228 - B1F SINE Alu 0 149 1 5 946 537 336 112 22 chr12 47423417 47423782 -73833748 - MER34A1 LTR ERV1 -89 498 101 5 946 287 132 0 14 chr12 47423787 47423856 -73833674 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 946 582 15 0 0 chr12 47424133 47424200 -73833330 + (TTA)n Simple_repeat Simple_repeat 1 67 0 5 946 22 0 0 0 chr12 47426034 47426056 -73831474 + GC_rich Low_complexity Low_complexity 1 22 0 5 946 225 0 0 0 chr12 47426787 47426812 -73830718 + (TTG)n Simple_repeat Simple_repeat 3 27 0 5 946 21 0 0 0 chr12 47426978 47426999 -73830531 + AT_rich Low_complexity Low_complexity 1 21 0 5 946 224 203 0 30 chr12 47427119 47427185 -73830345 + CT-rich Low_complexity Low_complexity 3 66 0 5 946 2484 239 102 25 chr12 47427201 47427991 -73829539 - RMER1B Other Other -1 1065 173 5 946 441 0 0 0 chr12 47429317 47429366 -73828164 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 946 387 0 0 0 chr12 47429979 47430022 -73827508 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 946 233 385 71 44 chr12 47432097 47432279 -73825251 - LTR33 LTR ERVL -300 215 29 5 946 930 58 0 0 chr12 47432406 47432527 -73825003 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 5 946 833 189 68 73 chr12 47432640 47432874 -73824656 + ORR1D1 LTR MaLR 142 374 0 5 946 2100 164 0 14 chr12 47432981 47433339 -73824191 - MTB_Mm LTR MaLR -52 355 3 5 946 341 259 33 92 chr12 47433373 47433526 -73824004 - Lx2B LINE L1 -23 6977 6834 5 946 474 275 0 40 chr12 47433499 47433647 -73823883 - Lx2B LINE L1 -117 6883 6742 5 946 1958 317 44 13 chr12 47434989 47435769 -73821761 - Lx8 LINE L1 -2 7471 6668 5 946 828 261 188 4 chr12 47435944 47436221 -73821309 - Lx8 LINE L1 -811 6662 6335 5 946 2999 26 0 3 chr12 47436508 47436855 -73820675 - ORR1A0 LTR MaLR 0 346 1 5 946 545 248 67 15 chr12 47437061 47437162 -73820368 + B1_Mur4 SINE Alu 1 110 -40 5 946 211 28 56 0 chr12 47437162 47437198 -73820332 + (ATAGG)n Simple_repeat Simple_repeat 1 38 0 5 946 545 248 67 15 chr12 47437198 47437231 -73820299 + B1_Mur4 SINE Alu 111 141 -9 5 946 186 43 0 0 chr12 47437235 47437258 -73820272 + (CCA)n Simple_repeat Simple_repeat 3 25 0 5 946 704 290 78 57 chr12 47437473 47437806 -73819724 - ORR1E LTR MaLR -8 351 12 5 946 521 221 75 22 chr12 47437855 47437989 -73819541 + MLT1A1 LTR MaLR 268 408 0 5 946 21 71 0 0 chr12 47438101 47438143 -73819387 + AT_rich Low_complexity Low_complexity 1 42 0 5 946 231 350 201 14 chr12 47438325 47438534 -73818996 + MLT1A1 LTR MaLR 45 292 -73 5 946 313 236 53 11 chr12 47439155 47439249 -73818281 + MLT1A1 LTR MaLR 287 384 -24 5 946 411 236 45 0 chr12 47439465 47439554 -73817976 + B3A SINE B2 1 93 -105 5 946 642 13 0 0 chr12 47440015 47440090 -73817440 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 946 480 305 70 44 chr12 47440790 47441061 -73816469 + B4A SINE B4 1 278 -14 5 946 270 239 15 0 chr12 47441084 47441151 -73816379 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 946 422 291 30 40 chr12 47441664 47441854 -73815676 - MIRc SINE MIR -57 205 17 5 946 555 118 0 0 chr12 47442117 47442202 -73815328 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 946 2176 70 47 3 chr12 47444439 47444740 -73812790 - L1_Mus2 LINE L1 -4 6562 6249 5 946 233 377 57 0 chr12 47444879 47444985 -73812545 + PB1D10 SINE Alu 1 112 -5 5 946 360 0 0 0 chr12 47445282 47445322 -73812208 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 946 420 71 0 0 chr12 47445322 47445377 -73812153 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 946 705 56 0 0 chr12 47445523 47445613 -73811917 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 946 335 235 12 0 chr12 47445688 47445769 -73811761 + L1_Mur2 LINE L1 3486 3567 -2310 5 946 260 169 28 0 chr12 47446205 47446276 -73811254 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 5 946 183 80 0 0 chr12 47446277 47446302 -73811228 + (CCCCCT)n Simple_repeat Simple_repeat 2 26 0 5 946 223 273 89 25 chr12 47446493 47446529 -73811001 + B3 SINE B2 88 128 -88 5 946 732 281 137 48 chr12 47446529 47446967 -73810563 + RLTR28B LTR ERVL 3 479 -2 5 946 434 247 21 0 chr12 47446984 47447077 -73810453 + B3 SINE B2 122 216 0 5 946 876 175 7 0 chr12 47447094 47447231 -73810299 + B1_Mur4 SINE Alu 5 142 -8 5 946 566 28 14 0 chr12 47447322 47447394 -73810136 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 947 32 57 0 0 chr12 47448696 47448749 -73808781 + AT_rich Low_complexity Low_complexity 1 53 0 5 947 2071 199 11 86 chr12 47448765 47449298 -73808232 + RLTR24 LTR ERV1 14 506 -23 5 947 2855 312 62 25 chr12 47450270 47451332 -73806198 + Lx8 LINE L1 6245 7345 -128 5 947 701 359 22 30 chr12 47451490 47451757 -73805773 + B4A SINE B4 6 270 -22 5 947 1053 156 0 0 chr12 47451806 47452088 -73805442 + (CA)n Simple_repeat Simple_repeat 1 282 0 5 947 432 0 0 0 chr12 47452883 47452931 -73804599 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 947 234 274 8 36 chr12 47453572 47453655 -73803875 - L1MC LINE L1 -2475 3671 3582 5 947 342 0 0 0 chr12 47453738 47453776 -73803754 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 947 1386 287 60 56 chr12 47453919 47454810 -73802720 - L1M4b LINE L1 -1873 5127 4234 5 947 326 375 78 66 chr12 47454942 47455458 -73802072 - L1M4b LINE L1 -5884 1450 929 5 947 477 0 0 0 chr12 47455700 47455753 -73801777 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 947 8974 42 0 0 chr12 47456953 47458752 -73798778 - L1Md_F2 LINE L1 -12 6570 4771 5 947 752 330 43 106 chr12 47462623 47463020 -73794510 - MTE2b LTR MaLR 0 379 8 5 947 2060 304 114 138 chr12 47463023 47463502 -73794028 - MTE2b-int LTR MaLR 0 1580 1119 5 947 1164 29 0 0 chr12 47463502 47463642 -73793888 + (TCTCCC)n Simple_repeat Simple_repeat 3 142 0 5 947 2060 304 114 138 chr12 47463642 47464076 -73793454 - MTE2b-int LTR MaLR -462 1118 589 5 947 369 0 0 0 chr12 47464076 47464117 -73793413 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 5 947 2060 304 114 138 chr12 47464117 47464350 -73793180 - MTE2b-int LTR MaLR -992 588 439 5 947 3640 75 29 37 chr12 47464350 47464865 -73792665 - L1_Mus2 LINE L1 -1 6565 6055 6 947 2060 304 114 138 chr12 47464865 47465327 -73792203 - MTE2b-int LTR MaLR -1142 438 9 5 947 1301 301 51 0 chr12 47465346 47465701 -73791829 - MTE2b LTR MaLR -5 374 2 5 947 201 189 0 19 chr12 47466802 47466856 -73790674 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 947 25 31 0 0 chr12 47468495 47468527 -73789003 + AT_rich Low_complexity Low_complexity 1 32 0 6 947 192 324 109 18 chr12 47471322 47471432 -73786098 + MIRb SINE MIR 8 127 -141 6 947 608 305 56 42 chr12 47471526 47471810 -73785720 - B4A SINE B4 -4 288 1 6 947 201 74 0 0 chr12 47473700 47473727 -73783803 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 947 254 236 146 0 chr12 47474310 47474399 -73783131 - MIR SINE MIR -89 119 18 6 947 331 185 0 71 chr12 47474435 47474505 -73783025 - MIRc SINE MIR -127 141 77 6 947 30 69 0 0 chr12 47475189 47475247 -73782283 + AT_rich Low_complexity Low_complexity 1 58 0 6 947 355 289 5 22 chr12 47475401 47475501 -73782029 + PB1 SINE Alu 6 99 -21 6 947 605 288 47 0 chr12 47475720 47475890 -73781640 + MTEb LTR MaLR 1 178 -201 6 947 386 329 51 59 chr12 47475898 47475953 -73781577 - Lx8 LINE L1 -181 7292 7237 6 947 459 0 0 0 chr12 47475953 47476004 -73781526 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 947 386 329 51 59 chr12 47476004 47476203 -73781327 - Lx8 LINE L1 -237 7236 7041 6 947 3132 61 0 0 chr12 47476276 47476670 -73780860 - L1Md_F2 LINE L1 -12 6570 6177 6 947 420 289 113 7 chr12 47476896 47477046 -73780484 + MTEb LTR MaLR 206 371 -8 6 947 1158 57 0 6 chr12 47477705 47477864 -73779666 - L1_Mus1 LINE L1 0 6567 6410 6 947 4429 70 0 3 chr12 47477864 47478462 -73779068 + L1_Mm LINE L1 3920 4515 -1368 6 947 22 0 0 0 chr12 47478719 47478741 -73778789 + AT_rich Low_complexity Low_complexity 1 22 0 6 947 203 61 0 29 chr12 47478754 47478788 -73778742 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 6 947 23 0 0 0 chr12 47478792 47478815 -73778715 + AT_rich Low_complexity Low_complexity 1 23 0 6 947 411 21 0 0 chr12 47478921 47478969 -73778561 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 947 434 326 115 79 chr12 47479364 47479617 -73777913 - B4 SINE B4 -29 263 2 6 947 191 36 36 0 chr12 47479683 47479711 -73777819 + (TTATA)n Simple_repeat Simple_repeat 2 30 0 6 947 508 287 38 160 chr12 47480435 47480650 -73776880 + B3 SINE B2 2 210 -6 6 947 661 225 14 7 chr12 47480709 47480852 -73776678 - B1_Mur4 SINE Alu -6 144 1 6 947 468 0 0 0 chr12 47481439 47481491 -73776039 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 947 399 21 0 0 chr12 47481491 47481538 -73775992 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 947 5503 238 84 12 chr12 47481971 47482801 -73774729 + Lx6 LINE L1 5981 6895 -565 6 947 240 35 0 0 chr12 47482801 47482830 -73774700 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 947 249 57 0 0 chr12 47482831 47482866 -73774664 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 6 947 5503 238 84 12 chr12 47482866 47483394 -73774136 + Lx6 LINE L1 6896 7440 -20 6 947 2622 255 72 19 chr12 47483412 47485217 -73772313 - Lx6 LINE L1 -27 7433 5284 6 947 6090 87 16 6 chr12 47485231 47486068 -73771462 - L1Md_F2 LINE L1 -4 6578 5734 6 947 378 186 281 25 chr12 47486089 47486210 -73771320 + RLTR17 LTR ERVK 538 689 -3 6 947 5598 203 65 21 chr12 47486214 47487547 -73769983 - Lx6 LINE L1 -731 5149 3759 6 947 42 65 0 0 chr12 47487567 47487644 -73769886 + AT_rich Low_complexity Low_complexity 1 77 0 6 947 278 279 0 14 chr12 47488599 47488668 -73768862 + RSINE1 SINE B4 75 142 -23 6 947 2057 44 4 0 chr12 47488669 47488919 -73768611 + L1Md_F2 LINE L1 5345 5595 -288 6 947 7273 69 27 4 chr12 47488944 47489906 -73767624 + L1Md_F2 LINE L1 5587 6570 -12 6 947 842 265 200 14 chr12 47489911 47490206 -73767324 - MTE2b LTR MaLR -29 350 1 6 947 639 295 67 128 chr12 47492479 47492797 -73764733 + MER92B LTR ERV1 26 334 -302 6 947 582 60 0 0 chr12 47492797 47492880 -73764650 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 947 639 295 67 128 chr12 47492880 47493067 -73764463 + MER92B LTR ERV1 335 500 -136 6 947 2074 103 3 61 chr12 47493178 47493520 -73764010 + L1_Mus2 LINE L1 6245 6566 0 6 947 507 291 68 16 chr12 47493859 47494051 -73763479 + MIR3 SINE MIR 1 202 -6 6 947 515 326 154 45 chr12 47495798 47496247 -73761283 + MLT1D LTR MaLR 8 505 0 6 947 326 347 0 41 chr12 47497272 47497395 -73760135 - MLT1G3 LTR MaLR -31 564 447 6 947 24 32 0 0 chr12 47497627 47497658 -73759872 + AT_rich Low_complexity Low_complexity 1 31 0 6 947 338 348 9 0 chr12 47497928 47498040 -73759490 + PB1D10 SINE Alu 5 117 0 6 947 226 293 207 0 chr12 47498476 47498558 -73758972 - MIR SINE MIR -80 128 30 6 947 735 44 0 0 chr12 47499025 47499116 -73758414 + (TC)n Simple_repeat Simple_repeat 2 92 0 6 947 1176 35 0 14 chr12 47499117 47499263 -73758267 - B1_Mus2 SINE Alu 0 147 4 6 947 408 308 92 40 chr12 47499639 47499791 -73757739 - RSINE1 SINE B4 0 165 6 6 947 387 0 0 0 chr12 47501011 47501054 -73756476 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 947 396 0 0 0 chr12 47501054 47501097 -73756433 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 947 230 234 168 11 chr12 47501153 47501248 -73756282 - PB1D7 SINE Alu -1 119 10 3 947 320 328 80 20 chr12 47502062 47502261 -73755269 + RMER15 LTR ERVL 347 557 -18 4 947 294 250 42 32 chr12 47502328 47502423 -73755107 - MER2 DNA MER2_type -108 237 142 5 947 873 171 4 109 chr12 47502464 47502693 -73754837 - RLTR25B LTR ERVK -11 1092 888 6 947 543 196 0 0 chr12 47502693 47502861 -73754669 + (TG)n Simple_repeat Simple_repeat 1 168 0 7 947 495 143 41 0 chr12 47502863 47502961 -73754569 + (TCTG)n Simple_repeat Simple_repeat 3 104 0 8 947 339 127 0 0 chr12 47502963 47503026 -73754504 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 947 2455 177 253 9 chr12 47503026 47503675 -73753855 - RLTR25B LTR ERVK -221 807 1 6 947 358 248 16 66 chr12 47504117 47504238 -73753292 - PB1D10 SINE Alu -1 116 2 1 947 367 315 134 45 chr12 47505856 47506157 -73751373 + MLT1A1 LTR MaLR 25 398 -10 1 947 372 22 0 0 chr12 47506164 47506209 -73751321 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 947 2190 273 68 14 chr12 47506483 47507192 -73750338 + RMER1A Other Other 144 780 -250 1 947 3586 14 0 2 chr12 47507185 47507608 -73749922 - L1Md_T LINE L1 -1387 4496 4075 1 947 8917 20 0 0 chr12 47507608 47508638 -73748892 + L1Md_T LINE L1 4557 5586 -297 1 947 8284 40 0 0 chr12 47508638 47509631 -73747899 + L1Md_T LINE L1 5587 6579 -3 1 947 974 157 97 18 chr12 47509640 47509867 -73747663 + RMER1A Other Other 786 1030 0 1 947 432 136 0 0 chr12 47509901 47509989 -73747541 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 947 225 0 0 0 chr12 47510232 47510257 -73747273 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 947 386 235 7 0 chr12 47510456 47510605 -73746925 + (TG)n Simple_repeat Simple_repeat 2 151 0 1 947 362 194 0 84 chr12 47510619 47510810 -73746720 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 1 947 212 253 0 11 chr12 47510877 47510969 -73746561 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 947 613 199 6 6 chr12 47510987 47511144 -73746386 + (TG)n Simple_repeat Simple_repeat 2 158 0 2 947 360 133 0 0 chr12 47511401 47511461 -73746069 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 947 415 312 47 64 chr12 47511496 47511667 -73745863 - B3A SINE B2 -21 177 10 2 947 193 75 0 48 chr12 47511723 47511765 -73745765 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 947 240 100 0 0 chr12 47511961 47512001 -73745529 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 947 188 287 50 50 chr12 47512079 47512178 -73745352 - L3 LINE CR1 -2293 2196 2098 2 947 283 361 54 59 chr12 47512641 47512844 -73744686 + MLT1J LTR MaLR 1 202 -310 2 947 5973 204 91 74 chr12 47513577 47515630 -73741900 + L1_Mur2 LINE L1 904 2978 -2902 2 947 2273 272 99 26 chr12 47515643 47516402 -73741128 + Lx6 LINE L1 6621 7434 -26 2 947 1253 152 8 97 chr12 47516799 47517046 -73740484 + URR1A DNA MER1_type 1 225 -1 2 947 678 113 0 0 chr12 47517147 47517253 -73740277 + (TCCC)n Simple_repeat Simple_repeat 4 109 0 3 947 468 0 0 0 chr12 47517287 47517339 -73740191 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 947 21 0 0 0 chr12 47518357 47518378 -73739152 + AT_rich Low_complexity Low_complexity 1 21 0 3 947 358 257 186 0 chr12 47518760 47518873 -73738657 - MTE2b LTR MaLR -46 333 200 3 947 773 90 8 0 chr12 47518979 47519112 -73738418 + (TC)n Simple_repeat Simple_repeat 2 135 0 3 947 26 50 0 0 chr12 47519433 47519473 -73738057 + AT_rich Low_complexity Low_complexity 1 40 0 3 947 577 220 18 0 chr12 47520805 47520914 -73736616 + B3 SINE B2 2 112 -104 3 947 27 29 0 0 chr12 47520939 47520973 -73736557 + AT_rich Low_complexity Low_complexity 1 34 0 3 947 1039 80 0 0 chr12 47521113 47521251 -73736279 - B1_Mus1 SINE Alu -9 139 2 3 947 213 154 0 0 chr12 47521695 47521734 -73735796 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 947 829 304 77 32 chr12 47521991 47522368 -73735162 + MTD LTR MaLR 24 417 -2 4 947 192 77 0 0 chr12 47522443 47522469 -73735061 + (A)n Simple_repeat Simple_repeat 1 26 0 4 947 183 114 0 0 chr12 47523957 47523992 -73733538 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 947 252 0 0 0 chr12 47523994 47524022 -73733508 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 947 618 26 0 0 chr12 47524151 47524227 -73733303 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 947 315 0 0 0 chr12 47524227 47524261 -73733269 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 947 22 35 0 0 chr12 47525591 47525620 -73731910 + AT_rich Low_complexity Low_complexity 1 29 0 4 947 225 0 0 0 chr12 47526544 47526569 -73730961 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 947 928 40 63 0 chr12 47526613 47526739 -73730791 - L1Md_F3 LINE L1 -14 6570 6437 4 947 574 285 134 45 chr12 47527179 47527469 -73730061 - RMER13A LTR ERVK -394 466 151 4 947 180 184 79 0 chr12 47527524 47527562 -73729968 + L3b LINE CR1 441 481 -1 5 947 1416 265 19 16 chr12 47528108 47528472 -73729058 + MTEb LTR MaLR 15 379 0 5 947 2231 108 15 3 chr12 47530257 47530582 -73726948 - L1_Mm LINE L1 -190 5696 5366 5 947 935 48 0 0 chr12 47530582 47530707 -73726823 + L1Md_F2 LINE L1 6441 6565 -17 5 947 333 0 0 0 chr12 47530710 47530747 -73726783 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 5 947 2131 154 16 82 chr12 47530747 47530869 -73726661 - L1_Mm LINE L1 -501 5385 5275 5 947 2150 72 7 13 chr12 47530870 47531168 -73726362 + L1_Mus3 LINE L1 6342 6637 -1 5 947 222 194 0 0 chr12 47531371 47531407 -73726123 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 947 315 0 0 0 chr12 47532674 47532709 -73724821 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 947 427 252 20 10 chr12 47533122 47533222 -73724308 + ID_B1 SINE B4 83 183 -41 5 947 253 308 0 49 chr12 47533351 47533433 -73724097 + MTEa LTR MaLR 5 82 -297 5 947 393 22 0 0 chr12 47533467 47533513 -73724017 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 947 25 31 0 0 chr12 47533513 47533545 -73723985 + AT_rich Low_complexity Low_complexity 1 32 0 6 947 342 305 105 0 chr12 47533546 47533651 -73723879 + PB1D10 SINE Alu 1 116 -1 6 947 22 88 0 0 chr12 47534409 47534466 -73723064 + AT_rich Low_complexity Low_complexity 1 57 0 6 947 306 0 0 0 chr12 47534733 47534767 -73722763 + (TAA)n Simple_repeat Simple_repeat 2 35 0 6 947 407 207 12 12 chr12 47534772 47534855 -73722675 + BC1_Mm scRNA scRNA 2 84 -68 6 947 512 290 106 17 chr12 47534867 47535046 -73722484 + B3A SINE B2 1 195 -3 6 947 674 191 22 92 chr12 47535215 47535286 -73722244 - MTC LTR MaLR -3 418 362 6 947 2243 53 0 0 chr12 47535286 47535568 -73721962 - L1Md_F2 LINE L1 -10 6572 6291 6 947 767 184 21 74 chr12 47535568 47535854 -73721676 - MTC LTR MaLR -60 361 1 6 947 21 0 0 0 chr12 47535869 47535890 -73721640 + AT_rich Low_complexity Low_complexity 1 21 0 6 947 366 267 13 0 chr12 47536131 47536206 -73721324 + B1_Mur3 SINE Alu 2 77 -72 7 947 612 172 0 0 chr12 47536235 47536334 -73721196 + B1_Mur2 SINE Alu 45 143 -6 7 947 474 108 0 0 chr12 47536344 47536427 -73721103 + (TC)n Simple_repeat Simple_repeat 2 84 0 7 947 380 213 0 0 chr12 47536436 47536530 -73721000 - Lx9 LINE L1 -21 7623 7530 7 947 305 276 0 22 chr12 47536544 47536633 -73720897 - Lx7 LINE L1 -15 7681 7595 7 947 612 59 0 0 chr12 47536693 47536778 -73720752 + (GA)n Simple_repeat Simple_repeat 2 86 0 7 947 549 204 0 0 chr12 47536951 47537049 -73720481 + B1F2 SINE Alu 45 142 -7 7 947 221 275 0 14 chr12 47537051 47537121 -73720409 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 7 947 329 97 32 0 chr12 47537438 47537500 -73720030 + (CATA)n Simple_repeat Simple_repeat 2 65 0 7 947 360 111 0 0 chr12 47539309 47539363 -73718167 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 947 246 309 59 0 chr12 47539519 47539587 -73717943 + ID4_ SINE ID 12 83 0 8 947 762 275 61 21 chr12 47540224 47540503 -73717027 - Lx8 LINE L1 -56 7417 7128 8 947 497 325 13 13 chr12 47540497 47540653 -73716877 + Lx8 LINE L1 6471 6626 -847 8 947 12361 11 4 0 chr12 47540682 47542760 -73714770 - L1Md_A LINE L1 0 6582 4493 8 947 226 350 118 24 chr12 47542786 47542997 -73714533 + B4 SINE B4 2 232 -60 8 947 204 125 0 0 chr12 47543060 47543092 -73714438 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 947 290 258 147 49 chr12 47543599 47543762 -73713768 - MER53 DNA hAT 0 193 15 8 947 404 278 100 39 chr12 47544656 47544836 -73712694 + B3A SINE B2 2 192 -6 8 947 375 341 100 44 chr12 47544933 47544979 -73712551 + MLT1A0 LTR MaLR 1 47 -318 8 947 483 18 0 0 chr12 47544979 47545035 -73712495 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 8 947 375 287 170 80 chr12 47545035 47545299 -73712231 + MLT1A0 LTR MaLR 46 339 -35 8 947 26 64 0 0 chr12 47545449 47545496 -73712034 + AT_rich Low_complexity Low_complexity 1 47 0 9 947 23 0 0 0 chr12 47545532 47545555 -73711975 + AT_rich Low_complexity Low_complexity 1 23 0 9 947 2007 116 50 0 chr12 47546855 47547158 -73710372 - ORR1A2 LTR MaLR 0 327 10 9 947 544 165 11 0 chr12 47547149 47547164 -73710366 + MT2B LTR ERVL 151 166 -435 9 947 371 327 84 0 chr12 47547164 47547243 -73710287 + B1_Mus2 SINE Alu 3 90 -57 9 947 214 343 0 0 chr12 47547243 47547313 -73710217 + ID2 SINE ID 1 70 -13 9 947 2824 118 40 36 chr12 47547392 47547865 -73709665 - MT2C_Mm LTR ERVL 0 475 1 9 947 1116 286 94 9 chr12 47547867 47548206 -73709324 - MTEa LTR MaLR -5 374 7 9 947 861 309 73 26 chr12 47548213 47548515 -73709015 - MLT1A0 LTR MaLR -41 324 9 9 947 3156 48 8 2 chr12 47549539 47549933 -73707597 - MTA_Mm LTR MaLR 0 396 1 9 947 726 72 0 0 chr12 47550048 47550145 -73707385 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 947 561 30 0 0 chr12 47550145 47550211 -73707319 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 947 644 178 50 8 chr12 47550257 47550320 -73707210 + B1_Mur4 SINE Alu 26 88 -62 1 947 528 30 0 0 chr12 47550320 47550386 -73707144 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 947 644 178 50 8 chr12 47550386 47550441 -73707089 + B1_Mur4 SINE Alu 89 149 -1 1 947 378 0 0 0 chr12 47550460 47550502 -73707028 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 947 748 154 69 7 chr12 47551789 47551933 -73705597 - MTC LTR MaLR -7 414 262 1 947 561 243 97 172 chr12 47551944 47552426 -73705104 + RMER4B LTR ERVK 33 587 -24 1 947 1331 191 28 0 chr12 47552446 47552697 -73704833 - MTC LTR MaLR -163 258 1 1 947 315 268 0 14 chr12 47552763 47552835 -73704695 + ID4_ SINE ID 3 73 -10 1 947 484 136 10 20 chr12 47552845 47552943 -73704587 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 1 947 236 128 56 56 chr12 47552944 47553052 -73704478 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 947 2205 72 0 0 chr12 47553113 47553392 -73704138 + L1_Mm LINE L1 5519 5797 -86 1 947 7773 63 0 3 chr12 47553387 47554381 -73703149 + L1Md_F2 LINE L1 4596 5586 -297 1 947 7919 58 0 1 chr12 47554381 47555366 -73702164 + L1Md_F2 LINE L1 5587 6570 -12 1 947 5805 64 28 9 chr12 47555364 47556149 -73701381 + L1Md_F2 LINE L1 5783 6582 0 1 947 693 213 7 21 chr12 47556387 47556531 -73700999 - B1_Mur2 SINE Alu -5 144 3 1 947 22 22 0 62 chr12 47556544 47556592 -73700938 + AT_rich Low_complexity Low_complexity 1 45 0 1 947 6669 109 42 14 chr12 47556622 47557627 -73699903 - RLTR13D4 LTR ERVK 0 1033 1 1 947 916 277 71 96 chr12 47557633 47557733 -73699797 + MTD LTR MaLR 18 120 -299 1 947 922 114 50 0 chr12 47557733 47557873 -73699657 - B1_Mus1 SINE Alu 0 148 2 1 947 916 277 71 96 chr12 47557873 47558179 -73699351 + MTD LTR MaLR 121 414 -5 1 947 598 261 22 0 chr12 47558185 47558323 -73699207 + B1_Mur2 SINE Alu 2 142 -7 1 947 362 243 44 73 chr12 47559473 47559677 -73697853 - L1MA6 LINE L1 0 6300 6103 1 947 778 165 7 29 chr12 47559764 47559901 -73697629 + B1_Mur4 SINE Alu 16 149 -1 1 947 2350 132 39 12 chr12 47560101 47560508 -73697022 + Lx2 LINE L1 6566 6983 -14 1 947 399 293 16 8 chr12 47560571 47560695 -73696835 + Lx7 LINE L1 7189 7313 -383 1 947 615 39 0 0 chr12 47560696 47560774 -73696756 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 947 256 223 9 46 chr12 47560799 47560907 -73696623 + T-rich Low_complexity Low_complexity 4 107 0 1 947 26 0 0 0 chr12 47560960 47560986 -73696544 + AT_rich Low_complexity Low_complexity 1 26 0 1 947 26 30 0 0 chr12 47561672 47561705 -73695825 + AT_rich Low_complexity Low_complexity 1 33 0 1 947 2956 71 34 2 chr12 47562209 47562618 -73694912 + Lx3_Mus LINE L1 6580 7001 -8 1 947 1033 100 0 22 chr12 47562667 47562893 -73694637 + (GAAA)n Simple_repeat Simple_repeat 1 221 0 1 947 559 213 46 0 chr12 47562893 47563001 -73694529 - MTC LTR MaLR -308 113 1 1 947 1106 37 7 0 chr12 47563358 47563493 -73694037 + B1_Mus1 SINE Alu 1 136 -12 1 947 396 0 0 0 chr12 47563493 47563537 -73693993 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 947 21 36 0 0 chr12 47563838 47563866 -73693664 + AT_rich Low_complexity Low_complexity 1 28 0 1 947 235 132 0 0 chr12 47564633 47564671 -73692859 + Lx3_Mus LINE L1 6732 6769 -240 1 947 360 355 119 13 chr12 47565081 47565392 -73692138 - MER2 DNA MER2_type -1 344 1 1 947 2031 195 22 3 chr12 47565652 47566023 -73691507 + ORR1B1 LTR MaLR 1 378 -16 1 947 521 30 15 0 chr12 47566025 47566092 -73691438 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 947 418 361 4 25 chr12 47566093 47566329 -73691201 - Lx9 LINE L1 -189 7455 7225 1 947 457 314 13 19 chr12 47566324 47566480 -73691050 + Lx9 LINE L1 6394 6548 -1096 1 947 291 54 0 0 chr12 47566501 47566538 -73690992 - Lx LINE L1 -959 5695 5659 1 947 6531 102 10 1 chr12 47566516 47567452 -73690078 + L1_Mus4 LINE L1 5693 6636 0 1 947 704 300 165 6 chr12 47567457 47567796 -73689734 + Lx9 LINE L1 6564 6956 -688 1 947 31871 80 1 12 chr12 47567922 47573184 -73684346 + L1Md_F2 LINE L1 383 5585 -298 1 947 7509 76 0 6 chr12 47573185 47574187 -73683343 + L1Md_F2 LINE L1 5587 6582 0 1 947 421 287 103 2 chr12 47574193 47574415 -73683115 - L1M1 LINE L1 -451 5720 5478 1 947 320 392 28 0 chr12 47574719 47574895 -73682635 - MIR SINE MIR -44 218 38 1 947 413 300 0 39 chr12 47576256 47576360 -73681170 + B1_Mur1 SINE Alu 50 149 0 1 947 240 258 48 0 chr12 47576583 47576645 -73680885 + B1F SINE Alu 73 137 -12 1 947 491 16 0 31 chr12 47576646 47576711 -73680819 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 1 947 363 23 0 0 chr12 47576738 47576782 -73680748 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 947 362 0 69 0 chr12 47577385 47577443 -73680087 + (TTG)n Simple_repeat Simple_repeat 2 63 0 1 947 360 0 0 0 chr12 47578226 47578266 -73679264 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 1 948 326 85 0 17 chr12 47579179 47579239 -73678291 + (TTTTTG)n Simple_repeat Simple_repeat 1 59 0 1 948 245 200 0 48 chr12 47579308 47579371 -73678159 + A-rich Low_complexity Low_complexity 2 61 0 1 948 228 213 0 0 chr12 47579698 47579759 -73677771 + CT-rich Low_complexity Low_complexity 3 63 0 1 948 203 311 0 39 chr12 47580724 47580801 -73676729 + GA-rich Low_complexity Low_complexity 2 75 0 1 948 802 201 159 5 chr12 47581291 47581486 -73676044 + URR1B DNA MER1_type 1 225 0 1 948 405 0 0 0 chr12 47581743 47581788 -73675742 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 948 498 276 18 0 chr12 47581892 47582097 -73675433 + L1M2 LINE L1 5338 5550 -606 1 948 444 37 0 0 chr12 47582257 47582311 -73675219 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 948 877 302 31 14 chr12 47582345 47582634 -73674896 + Lx7 LINE L1 5600 5893 -1803 1 948 2105 117 9 60 chr12 47582774 47583110 -73674420 + ORR1A2 LTR MaLR 1 319 -8 1 948 3135 157 47 2 chr12 47583107 47583681 -73673849 + ORR1A2-int LTR MaLR 6 605 -1187 1 948 742 190 4 80 chr12 47583607 47583789 -73673741 + MT2B LTR ERVL 130 287 -314 1 948 382 291 152 0 chr12 47584452 47584603 -73672927 - Charlie25 DNA MER1_type -1025 1499 1326 1 948 459 0 0 0 chr12 47586091 47586142 -73671388 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 948 1067 238 60 99 chr12 47587906 47588324 -73669206 + MT2A LTR ERVL 1 531 -70 1 948 546 16 0 0 chr12 47588333 47588396 -73669134 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 948 552 89 0 0 chr12 47596157 47596236 -73661294 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 1 948 404 153 0 27 chr12 47597479 47597553 -73659977 + MT2A LTR ERVL 1 72 -461 1 948 190 328 184 43 chr12 47598314 47598499 -73659031 + MIR SINE MIR 2 212 -50 1 948 293 185 0 80 chr12 47599132 47599232 -73658298 - Lx6 LINE L1 -28 7432 7341 1 948 183 42 0 0 chr12 47599235 47599259 -73658271 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 948 214 50 24 24 chr12 47599270 47599311 -73658219 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 948 561 329 78 7 chr12 47599317 47599546 -73657984 - Lx6 LINE L1 -311 7149 6946 1 948 4427 204 36 17 chr12 47599543 47600965 -73656565 + Lx5 LINE L1 4979 6448 -602 1 948 297 151 0 0 chr12 47601555 47601608 -73655922 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 948 2134 153 11 29 chr12 47601706 47602083 -73655447 + Lx3B LINE L1 6597 6966 -7 1 948 180 0 0 0 chr12 47602083 47602103 -73655427 + (ATG)n Simple_repeat Simple_repeat 2 21 0 1 948 373 308 76 58 chr12 47602500 47602882 -73654648 + MLT1B LTR MaLR 1 389 -1 1 948 180 323 10 68 chr12 47603340 47603443 -73654087 - MIRb SINE MIR -136 132 36 1 948 653 220 214 6 chr12 47604007 47604185 -73653345 + B3 SINE B2 2 216 0 1 948 23 0 0 0 chr12 47604186 47604209 -73653321 + AT_rich Low_complexity Low_complexity 1 23 0 1 948 365 0 22 0 chr12 47604633 47604678 -73652852 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 1 948 237 312 12 70 chr12 47606283 47606369 -73651161 - ID4_ SINE ID -1 82 2 1 948 222 384 30 30 chr12 47606423 47606592 -73650938 - L3 LINE CR1 -2251 2238 2070 1 948 1245 283 43 32 chr12 47606756 47607132 -73650398 - Lx8 LINE L1 -511 6962 6583 1 948 961 275 93 23 chr12 47607143 47607486 -73650044 + Lx8 LINE L1 6203 6569 -904 1 948 498 17 0 0 chr12 47607574 47607633 -73649897 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 948 207 100 0 0 chr12 47609963 47609993 -73647537 + (A)n Simple_repeat Simple_repeat 1 30 0 1 948 976 313 101 34 chr12 47611251 47611727 -73645803 + Charlie13a DNA Charlie 581 1088 -426 1 948 315 228 51 0 chr12 47612285 47612364 -73645166 - MER46C DNA MER2_type -16 322 240 1 948 181 337 113 21 chr12 47612758 47612855 -73644675 - L2b LINE L2 -5 3370 3265 1 948 23 33 0 0 chr12 47613196 47613226 -73644304 + AT_rich Low_complexity Low_complexity 1 30 0 1 948 25 0 0 0 chr12 47613278 47613303 -73644227 + AT_rich Low_complexity Low_complexity 1 25 0 1 948 5710 208 11 74 chr12 47613723 47614936 -73642594 - L1_Mur2 LINE L1 -1190 4690 3527 1 948 923 82 90 0 chr12 47614936 47615070 -73642460 + B1_Mus1 SINE Alu 3 148 0 1 948 5710 208 11 74 chr12 47615070 47615452 -73642078 - L1_Mur2 LINE L1 -2354 3526 3196 1 948 2854 218 37 196 chr12 47615448 47616017 -73641513 - L1_Mur2 LINE L1 -3231 2649 2059 1 948 1259 139 157 21 chr12 47616017 47616297 -73641233 - ORR1A4 LTR MaLR -9 320 3 1 948 2854 218 37 196 chr12 47616297 47616312 -73641218 - L1_Mur2 LINE L1 -3231 2058 2042 1 948 204 97 0 0 chr12 47616312 47616343 -73641187 + (TGG)n Simple_repeat Simple_repeat 1 31 0 1 948 2854 218 37 196 chr12 47616343 47616384 -73641146 - L1_Mur2 LINE L1 -3839 2041 1998 1 948 3045 151 33 25 chr12 47616384 47616484 -73641046 - Lx3A LINE L1 -3 6978 6879 1 948 186 43 0 0 chr12 47616484 47616507 -73641023 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 1 948 3045 151 33 25 chr12 47616507 47616923 -73640607 - Lx3A LINE L1 -103 6878 6459 1 948 2854 229 40 156 chr12 47616923 47617966 -73639564 - L1_Mur2 LINE L1 -3883 1997 959 1 948 2301 188 170 25 chr12 47618091 47618414 -73639116 - RMER6C LTR ERVK -1 689 329 1 948 1579 105 9 0 chr12 47618414 47618643 -73638887 + L1_Mus2 LINE L1 6335 6565 -1 1 948 744 68 0 0 chr12 47618652 47618755 -73638775 + (GAAA)n Simple_repeat Simple_repeat 3 105 0 1 948 2301 188 170 25 chr12 47618755 47619022 -73638508 - RMER6C LTR ERVK -368 322 4 1 948 257 242 105 0 chr12 47619199 47619294 -73638236 + L1_Mur3 LINE L1 848 952 -6760 2 948 916 138 6 12 chr12 47619868 47620036 -73637494 + GA-rich Low_complexity Low_complexity 2 168 0 2 948 339 385 42 79 chr12 47620119 47620449 -73637081 - MLT2F LTR ERVL -116 547 230 2 948 279 232 87 0 chr12 47620566 47620635 -73636895 - MER58A DNA MER1_type -117 107 33 2 948 297 385 17 17 chr12 47620652 47620771 -73636759 - MLT2F LTR ERVL -472 156 38 2 948 1193 213 41 4 chr12 47621232 47621477 -73636053 - Lx5 LINE L1 0 7050 6797 2 948 414 0 0 0 chr12 47622364 47622410 -73635120 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 948 21 100 0 0 chr12 47623617 47623687 -73633843 + AT_rich Low_complexity Low_complexity 1 70 0 2 948 1771 271 79 67 chr12 47623874 47624650 -73632880 - Lx9 LINE L1 -608 7036 6252 2 948 1231 291 97 22 chr12 47624748 47625253 -73632277 + Lx9 LINE L1 7082 7624 -20 2 948 21 71 0 0 chr12 47625253 47625295 -73632235 + AT_rich Low_complexity Low_complexity 1 42 0 2 948 447 19 0 0 chr12 47626336 47626388 -73631142 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 948 252 257 35 9 chr12 47626433 47626547 -73630983 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 948 7230 93 2 5 chr12 47626613 47628288 -73629242 - L1_Mus2 LINE L1 0 6566 4899 2 948 975 168 128 10 chr12 47629101 47629305 -73628225 - Lx4A LINE L1 -6 7052 6825 2 948 240 289 0 0 chr12 47629399 47629451 -73628079 - ID4_ SINE ID -11 72 21 2 948 1014 88 0 14 chr12 47630201 47630340 -73627190 - B1_Mus1 SINE Alu 0 148 12 2 948 489 262 39 96 chr12 47630206 47630362 -73627168 - B4 SINE B4 -69 223 77 2 948 450 218 44 82 chr12 47630248 47630383 -73627147 - MT2B LTR ERVL -344 257 128 2 948 406 328 8 0 chr12 47630644 47630778 -73626752 - Lx7 LINE L1 -1065 6631 6497 2 948 203 175 0 0 chr12 47630803 47630843 -73626687 + T-rich Low_complexity Low_complexity 1 40 0 2 948 250 389 0 0 chr12 47631094 47631207 -73626323 - L1MC4 LINE L1 -4509 1706 1594 2 948 312 143 0 0 chr12 47631232 47631302 -73626228 + (T)n Simple_repeat Simple_repeat 1 70 0 2 948 675 80 9 18 chr12 47631385 47631499 -73626031 + (TA)n Simple_repeat Simple_repeat 1 113 0 2 948 320 64 21 0 chr12 47631499 47631546 -73625984 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 948 342 0 0 0 chr12 47631553 47631591 -73625939 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 2 948 237 65 0 0 chr12 47631627 47631658 -73625872 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 948 41 58 0 0 chr12 47631860 47631929 -73625601 + AT_rich Low_complexity Low_complexity 1 69 0 2 948 1390 283 50 12 chr12 47632009 47632428 -73625102 - Lx6 LINE L1 -27 7433 6999 2 948 215 193 35 0 chr12 47632506 47632563 -73624967 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 2 948 1108 293 45 3 chr12 47632820 47633155 -73624375 + Lx8 LINE L1 6566 6914 -559 2 948 13736 90 19 27 chr12 47633897 47636634 -73620896 + L1VL2 LINE L1 276 2983 -632 2 948 247 25 24 24 chr12 47636793 47636834 -73620696 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 2 948 8099 38 0 10 chr12 47636853 47637835 -73619695 - L1Md_F2 LINE L1 -14 6568 5597 2 948 3050 282 77 28 chr12 47637850 47639051 -73618479 - Lx9 LINE L1 -275 7369 6111 2 948 259 0 98 0 chr12 47639443 47639484 -73618046 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 2 948 600 53 0 0 chr12 47639853 47639929 -73617601 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 948 244 189 38 0 chr12 47640003 47640056 -73617474 - L1MC1 LINE L1 -13 6320 6266 2 948 2387 195 12 100 chr12 47640060 47640640 -73616890 + RLTR24 LTR ERV1 1 529 0 2 948 434 298 7 7 chr12 47640645 47640787 -73616743 - L1MC1 LINE L1 -73 6260 6119 2 948 476 136 0 11 chr12 47640836 47640925 -73616605 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 948 283 170 0 0 chr12 47642844 47642891 -73614639 + MER5B DNA MER1_type 1 47 -131 2 948 21 36 0 0 chr12 47643413 47643441 -73614089 + AT_rich Low_complexity Low_complexity 1 28 0 2 948 405 0 0 0 chr12 47644017 47644062 -73613468 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 948 327 25 0 0 chr12 47644062 47644101 -73613429 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 948 297 0 0 0 chr12 47644440 47644473 -73613057 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 948 377 343 22 61 chr12 47644827 47645007 -73612523 + B3A SINE B2 9 181 -17 2 948 22 35 0 0 chr12 47645058 47645087 -73612443 + AT_rich Low_complexity Low_complexity 1 29 0 2 948 217 341 56 22 chr12 47645090 47645106 -73612424 + ID SINE ID 5 47 -177 2 948 263 241 35 0 chr12 47645106 47645164 -73612366 + ID4_ SINE ID 22 81 -2 2 948 217 341 56 22 chr12 47645164 47645180 -73612350 + ID_B1 SINE B4 48 97 -127 2 948 2322 300 113 20 chr12 47645336 47646640 -73610890 - Lx8 LINE L1 -547 6926 5492 2 948 1022 318 108 11 chr12 47646661 47647135 -73610395 + Lx8 LINE L1 6928 7447 -26 2 948 187 330 29 76 chr12 47647286 47647391 -73610139 + L4 LINE RTE 1084 1183 -846 2 948 25 65 0 0 chr12 47647674 47647720 -73609810 + AT_rich Low_complexity Low_complexity 1 46 0 2 948 268 213 0 0 chr12 47648601 47648648 -73608882 + L1_Rod LINE L1 68 114 -7058 2 948 2072 218 68 10 chr12 47648638 47649125 -73608405 + Lx9 LINE L1 6959 7473 -171 2 948 426 85 0 0 chr12 47649129 47649188 -73608342 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 948 24 32 0 0 chr12 47650155 47650186 -73607344 + AT_rich Low_complexity Low_complexity 1 31 0 2 948 609 368 34 8 chr12 47650263 47650476 -73607054 - B4A SINE B4 0 292 74 2 948 1925 72 107 4 chr12 47650476 47650776 -73606754 + IAPLTR2b LTR ERVK 1 357 0 2 948 256 291 25 25 chr12 47650776 47650853 -73606677 - B3A SINE B2 -121 77 1 2 948 2280 98 11 17 chr12 47651179 47651533 -73605997 - Lx LINE L1 0 6654 6303 2 948 813 136 15 29 chr12 47651535 47651671 -73605859 + Lx LINE L1 5555 5688 -195 2 948 3950 118 0 0 chr12 47651869 47652430 -73605100 + Lx LINE L1 5702 6262 -392 2 948 252 0 0 0 chr12 47652533 47652561 -73604969 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2 948 503 195 8 0 chr12 47653098 47653221 -73604309 + GA-rich Low_complexity Low_complexity 2 125 0 2 948 1059 107 0 0 chr12 47653221 47653399 -73604131 + (GAA)n Simple_repeat Simple_repeat 3 180 0 2 948 494 267 34 67 chr12 47653830 47654039 -73603491 - RLTR42-int LTR ERVK -4122 1400 1199 2 948 1152 68 0 0 chr12 47655206 47655352 -73602178 + B1_Mus2 SINE Alu 1 146 -1 2 948 237 33 0 0 chr12 47655354 47655384 -73602146 + (A)n Simple_repeat Simple_repeat 1 30 0 2 948 300 300 90 50 chr12 47656094 47656294 -73601236 + RMER15 LTR ERVL 352 559 -16 2 948 608 288 23 0 chr12 47656318 47656450 -73601080 - ID_B1 SINE B4 -7 217 83 2 948 917 354 32 27 chr12 47656515 47657041 -73600489 + Lx9 LINE L1 6838 7366 -278 2 948 1244 276 138 24 chr12 47657148 47657598 -73599932 + RMER15 LTR ERVL 27 527 -48 2 948 21 0 0 0 chr12 47657934 47657955 -73599575 + AT_rich Low_complexity Low_complexity 1 21 0 2 948 441 320 32 36 chr12 47659145 47659453 -73598077 - Charlie1b DNA MER1_type -99 424 118 2 948 246 32 0 0 chr12 47659739 47659770 -73597760 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 948 372 187 0 0 chr12 47659787 47659910 -73597620 + (TA)n Simple_repeat Simple_repeat 2 124 0 2 948 12707 23 0 0 chr12 47659925 47662084 -73595446 - L1Md_T LINE L1 0 6582 4424 2 948 1580 199 35 42 chr12 47662414 47662791 -73594739 + ORR1D1 LTR MaLR 1 374 0 2 948 723 271 26 15 chr12 47662803 47662998 -73594532 - MTEb LTR MaLR -35 344 148 2 948 1167 279 87 113 chr12 47663003 47663544 -73593986 - RMER15 LTR ERVL -22 553 27 2 948 554 237 36 7 chr12 47663613 47663759 -73593771 - MTEb LTR MaLR -208 171 17 2 948 192 40 0 0 chr12 47663872 47663897 -73593633 + (A)n Simple_repeat Simple_repeat 1 25 0 2 948 270 316 67 58 chr12 47664330 47664434 -73593096 - B4A SINE B4 0 292 188 2 948 244 105 53 0 chr12 47664832 47664889 -73592641 + T-rich Low_complexity Low_complexity 1 60 0 2 948 459 0 0 0 chr12 47664904 47664955 -73592575 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 948 360 0 0 0 chr12 47664955 47664994 -73592536 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 948 805 256 50 0 chr12 47665383 47665582 -73591948 - B3 SINE B2 -5 211 3 2 948 420 62 73 24 chr12 47665697 47665779 -73591751 + (TATAA)n Simple_repeat Simple_repeat 3 88 0 2 948 1519 252 55 8 chr12 47665991 47666390 -73591140 + MTD LTR MaLR 2 419 0 2 948 210 37 0 0 chr12 47668462 47668489 -73589041 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 948 1121 75 0 7 chr12 47668489 47668636 -73588894 - B1_Mus1 SINE Alu -2 146 1 2 948 23 33 0 0 chr12 47669171 47669201 -73588329 + AT_rich Low_complexity Low_complexity 1 30 0 2 948 346 360 113 43 chr12 47669504 47670308 -73587222 - L1M5 LINE L1 -1024 5122 4263 2 948 21 0 0 0 chr12 47670393 47670414 -73587116 + AT_rich Low_complexity Low_complexity 1 21 0 2 948 240 361 31 0 chr12 47670624 47670721 -73586809 - LTR33B LTR ERVL -4 499 400 2 948 708 358 70 83 chr12 47671331 47671525 -73586005 + MLT1E2 LTR MaLR 18 200 -427 2 948 432 0 0 0 chr12 47671525 47671573 -73585957 + (TGG)n Simple_repeat Simple_repeat 2 49 0 2 948 708 358 70 83 chr12 47671573 47671994 -73585536 + MLT1E2 LTR MaLR 201 625 -2 2 948 452 242 8 98 chr12 47672038 47672171 -73585359 - RSINE1 SINE B4 0 165 45 2 948 259 347 30 10 chr12 47672490 47672589 -73584941 + ID_B1 SINE B4 76 176 -48 2 948 295 370 0 0 chr12 47672504 47672596 -73584934 + PB1D10 SINE Alu 11 102 -15 2 948 375 60 0 0 chr12 47673290 47673340 -73584190 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 948 21 0 0 0 chr12 47673621 47673642 -73583888 + AT_rich Low_complexity Low_complexity 1 21 0 3 948 1784 244 19 29 chr12 47673744 47674157 -73583373 + MTC LTR MaLR 1 409 -12 3 948 1336 198 127 74 chr12 47674996 47675334 -73582196 - ORR1B1 LTR MaLR 0 394 39 3 948 230 278 50 30 chr12 47675420 47675520 -73582010 + MTEa LTR MaLR 278 379 0 3 948 25 0 0 0 chr12 47675579 47675604 -73581926 + AT_rich Low_complexity Low_complexity 1 25 0 3 948 1182 199 14 0 chr12 47675915 47676131 -73581399 - URR1B DNA MER1_type 0 225 7 3 948 180 0 0 0 chr12 47676559 47676579 -73580951 + (T)n Simple_repeat Simple_repeat 1 20 0 3 948 316 320 59 21 chr12 47677858 47678094 -73579436 - L1MC2 LINE L1 -218 6126 5882 3 948 35 41 0 0 chr12 47678308 47678357 -73579173 + AT_rich Low_complexity Low_complexity 1 49 0 3 948 197 159 23 0 chr12 47679075 47679119 -73578411 + (TATG)n Simple_repeat Simple_repeat 3 47 0 3 948 1683 228 62 14 chr12 47679127 47679523 -73578007 + MTD LTR MaLR 1 405 -14 3 948 181 372 114 9 chr12 47680242 47680356 -73577174 + L2b LINE L2 3077 3202 -173 3 948 218 349 24 12 chr12 47680476 47680560 -73576970 - MIRb SINE MIR -165 103 19 3 948 467 202 60 24 chr12 47680891 47681058 -73576472 - L1MA7 LINE L1 -31 6260 6088 3 948 472 299 58 25 chr12 47681051 47681329 -73576201 + L1MA9 LINE L1 5719 6005 -307 3 948 243 61 0 0 chr12 47681358 47681391 -73576139 + (A)n Simple_repeat Simple_repeat 1 33 0 3 948 324 0 0 0 chr12 47682866 47682902 -73574628 + (CAA)n Simple_repeat Simple_repeat 1 36 0 3 948 187 254 15 73 chr12 47683712 47683780 -73573750 - MIRb SINE MIR -94 174 111 3 948 657 230 151 26 chr12 47685035 47685227 -73572303 - B3 SINE B2 0 216 1 3 948 4184 51 2 13 chr12 47685807 47686342 -73571188 - L1Md_F2 LINE L1 0 6582 6054 3 948 561 286 30 0 chr12 47686854 47686987 -73570543 + RSINE1 SINE B4 7 143 -22 3 948 369 0 0 0 chr12 47687013 47687054 -73570476 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 3 948 763 271 28 9 chr12 47687477 47687689 -73569841 + B3 SINE B2 1 216 0 3 948 8497 270 121 58 chr12 47688466 47689462 -73568068 + Lx9 LINE L1 902 1993 -3854 3 948 1117 56 14 0 chr12 47689462 47689606 -73567924 + B1_Mus1 SINE Alu 3 148 0 3 948 8497 255 82 87 chr12 47689606 47690636 -73566894 + Lx9 LINE L1 1994 3020 -2827 3 948 194 62 31 0 chr12 47690636 47690668 -73566862 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 3 948 8497 255 82 87 chr12 47690668 47690863 -73566667 + Lx9 LINE L1 3021 3118 -2729 3 948 3308 83 76 4 chr12 47690863 47690948 -73566582 - Lx3_Mus LINE L1 0 7009 6907 3 948 180 0 0 0 chr12 47690948 47690968 -73566562 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 3 948 3308 83 76 4 chr12 47690968 47691366 -73566164 - Lx3_Mus LINE L1 -103 6906 6492 3 948 8497 255 82 87 chr12 47691366 47692020 -73565510 + Lx9 LINE L1 3119 3672 -2175 3 948 390 42 0 0 chr12 47692020 47692068 -73565462 + (TAG)n Simple_repeat Simple_repeat 3 50 0 3 948 8497 255 82 87 chr12 47692068 47693203 -73564327 + Lx9 LINE L1 3673 4919 -928 3 948 494 99 11 0 chr12 47693203 47693294 -73564236 + (CATA)n Simple_repeat Simple_repeat 1 92 0 3 948 8497 258 82 79 chr12 47693294 47694250 -73563280 + Lx9 LINE L1 4920 5967 -1677 3 948 304 283 27 33 chr12 47694622 47694772 -73562758 + L1_Mur3 LINE L1 1473 1632 -4248 3 948 2060 255 24 0 chr12 47694775 47695241 -73562289 - Lx7 LINE L1 -872 6824 6348 3 948 2120 268 62 26 chr12 47695232 47695959 -73561571 + Lx7 LINE L1 6812 7681 -15 3 948 517 306 37 5 chr12 47695966 47696183 -73561347 + L1_Mur3 LINE L1 1641 1864 -4016 3 948 318 287 11 11 chr12 47696348 47696436 -73561094 - Lx9 LINE L1 -755 6889 6802 3 948 416 285 11 85 chr12 47696460 47696648 -73560882 + Lx9 LINE L1 6943 7116 -528 3 948 432 105 0 0 chr12 47696648 47696724 -73560806 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 948 284 0 28 0 chr12 47696814 47696850 -73560680 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 948 324 298 8 26 chr12 47696850 47696967 -73560563 + L1_Mur3 LINE L1 2179 2293 -3587 3 948 523 346 70 23 chr12 47697199 47697501 -73560029 + MLT1C LTR MaLR 145 460 -7 3 948 286 328 52 29 chr12 47700992 47701160 -73556370 + LTR16B2 LTR ERVL 126 293 -170 3 948 196 239 151 27 chr12 47702598 47702671 -73554859 - MIRb SINE MIR -170 98 17 3 948 1956 207 139 95 chr12 47703393 47704199 -73553331 + RMER6C LTR ERVK 1 720 0 3 948 509 305 40 13 chr12 47704279 47704505 -73553025 + L1MA6 LINE L1 5341 5572 -728 3 948 327 314 29 92 chr12 47704514 47704721 -73552809 - RLTR31_Mm LTR ERVK 0 561 368 3 948 665 297 34 34 chr12 47704725 47705018 -73552512 + L1MA6 LINE L1 5907 6199 -101 3 948 274 219 0 59 chr12 47706222 47706324 -73551206 - MYSERV-int LTR ERVK -1116 5434 5339 3 948 250 246 118 71 chr12 47707561 47707688 -73549842 - RMER10A LTR ERVL 0 442 310 3 948 1656 206 31 82 chr12 47707705 47708129 -73549401 + RLTR20C LTR ERVK 1 402 -132 3 948 202 261 0 0 chr12 47708225 47708271 -73549259 + G-rich Low_complexity Low_complexity 1 46 0 3 948 234 0 0 0 chr12 47708524 47708550 -73548980 + (A)n Simple_repeat Simple_repeat 1 26 0 3 948 573 245 103 28 chr12 47708935 47709149 -73548381 - RLTR15 LTR ERVK -128 231 2 3 948 208 139 0 0 chr12 47709931 47709967 -73547563 + (T)n Simple_repeat Simple_repeat 1 36 0 3 949 372 208 4 54 chr12 47710672 47710792 -73546738 + MIR3 SINE MIR 83 187 -21 3 949 324 0 0 0 chr12 47711664 47711700 -73545830 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 949 1940 278 6 27 chr12 47711920 47712468 -73545062 - ERVL-B4-int LTR ERVL -541 5220 4685 3 949 6533 288 52 51 chr12 47712465 47713620 -73543910 - ERVL-B4-int LTR ERVL -2067 3647 2474 3 949 1218 48 0 0 chr12 47713620 47713766 -73543764 + B1_Mus2 SINE Alu 2 147 0 3 949 6533 304 107 40 chr12 47713766 47715651 -73541879 - ERVL-B4-int LTR ERVL -3241 2473 480 3 949 569 283 84 0 chr12 47715648 47715814 -73541716 - ERVL-int LTR ERVL -3312 2445 2266 3 949 395 377 20 7 chr12 47715818 47715965 -73541565 - MT2A LTR ERVL -138 395 247 3 949 296 226 48 0 chr12 47716002 47716064 -73541466 - MTE2b LTR MaLR -312 67 3 3 949 187 139 34 34 chr12 47716108 47716197 -73541333 + (TATAA)n Simple_repeat Simple_repeat 4 92 0 3 949 28 46 0 44 chr12 47716309 47716377 -73541153 + AT_rich Low_complexity Low_complexity 1 65 0 3 949 657 0 0 0 chr12 47716604 47716677 -73540853 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 3 949 238 106 43 0 chr12 47716690 47716737 -73540793 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 949 308 307 46 33 chr12 47717091 47717236 -73540294 + MIR3 SINE MIR 56 198 -10 3 949 234 91 0 0 chr12 47717748 47717781 -73539749 + (A)n Simple_repeat Simple_repeat 1 33 0 3 949 1798 293 90 12 chr12 47718475 47719062 -73538468 + MTE2b-int LTR MaLR 944 1576 -4 3 949 1295 275 43 9 chr12 47719071 47719416 -73538114 + MTE2b LTR MaLR 6 362 -17 3 949 4642 55 5 7 chr12 47719732 47720323 -73537207 - L1Md_F2 LINE L1 -19 6563 5974 3 949 495 112 0 0 chr12 47720556 47720636 -73536894 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 949 266 320 30 10 chr12 47720676 47720777 -73536753 - B1F1 SINE Alu -44 105 3 3 949 1302 169 24 0 chr12 47721134 47721382 -73536148 - Lx2 LINE L1 -29 6968 6715 3 949 4838 107 52 12 chr12 47721589 47722336 -73535194 - Lx3_Mus LINE L1 -8 7001 6225 3 949 5389 73 12 2 chr12 47722336 47723382 -73534148 + Lx3_Mus LINE L1 5141 6198 -811 3 949 237 241 0 0 chr12 47723693 47723751 -73533779 - L1MC LINE L1 -2137 5745 5688 3 949 3439 30 2 0 chr12 47723780 47724175 -73533355 - MTA_Mm LTR MaLR 0 396 1 3 949 9256 27 3 5 chr12 47724175 47725276 -73532254 - MTA_Mm-int LTR MaLR 0 1098 1 3 949 3359 28 15 0 chr12 47725276 47725666 -73531864 - MTA_Mm LTR MaLR 0 396 1 3 949 204 40 0 0 chr12 47727189 47727214 -73530316 + (A)n Simple_repeat Simple_repeat 1 25 0 3 949 3535 127 53 4 chr12 47727423 47727985 -73529545 + MT2B LTR ERVL 1 590 -11 3 949 206 148 131 0 chr12 47729234 47729295 -73528235 + (CATAT)n Simple_repeat Simple_repeat 2 70 0 3 949 1592 225 65 51 chr12 47730212 47730630 -73526900 - MTD LTR MaLR -9 410 1 3 949 1704 59 33 17 chr12 47730767 47731008 -73526522 - MT2B2 LTR ERVL -339 245 1 3 949 1118 62 0 20 chr12 47731229 47731378 -73526152 - B1_Mm SINE Alu 0 147 2 3 949 392 266 5 2 chr12 47731439 47731532 -73525998 - PB1D10 SINE Alu -8 141 27 3 949 2766 27 0 20 chr12 47731610 47731919 -73525611 + ORR1A0 LTR MaLR 2 310 -36 3 949 1713 127 24 60 chr12 47731919 47732253 -73525277 + RLTRETN_Mm LTR ERVK 1 322 0 3 949 2766 27 0 20 chr12 47732253 47732287 -73525243 + ORR1A0 LTR MaLR 311 338 -8 3 949 13875 61 3 2 chr12 47732291 47734080 -73523450 + ORR1A0-int LTR MaLR 1 1792 0 3 949 3051 23 0 0 chr12 47734080 47734426 -73523104 + ORR1A0 LTR MaLR 1 346 0 3 949 229 26 53 0 chr12 47735226 47735264 -73522266 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 3 949 833 230 58 10 chr12 47737435 47737641 -73519889 - B3 SINE B2 0 216 1 3 949 302 258 0 0 chr12 47738070 47738132 -73519398 - 7SK RNA RNA -260 71 10 3 949 576 29 0 0 chr12 47738611 47738681 -73518849 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 949 322 277 71 28 chr12 47738733 47738874 -73518656 + L2 LINE L2 2731 2877 -542 3 949 1745 185 38 78 chr12 47739174 47739351 -73518179 + ORR1C2 LTR MaLR 2 150 -234 3 949 4352 22 0 6 chr12 47739351 47739856 -73517674 - L1Md_T LINE L1 0 6582 6081 3 949 1745 185 38 78 chr12 47739856 47740077 -73517453 + ORR1C2 LTR MaLR 151 384 0 3 949 24 0 0 0 chr12 47740282 47740306 -73517224 + AT_rich Low_complexity Low_complexity 1 24 0 3 949 450 200 304 0 chr12 47740306 47740421 -73517109 - B1_Mur4 SINE Alu 0 150 1 3 949 339 25 0 0 chr12 47740446 47740486 -73517044 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 949 809 205 13 13 chr12 47741042 47741200 -73516330 - B2_Mm2 SINE B2 -36 159 2 3 949 287 273 109 74 chr12 47741212 47741524 -73516006 - L1M4 LINE L1 -763 5681 5359 3 949 1196 96 0 6 chr12 47741806 47741984 -73515546 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 3 949 1333 273 68 18 chr12 47742642 47743026 -73514504 + MTD LTR MaLR 17 419 0 3 949 904 270 126 82 chr12 47743027 47744056 -73513474 + MTD-int LTR MaLR 1 1258 0 3 949 780 229 100 76 chr12 47744068 47744319 -73513211 + MTD LTR MaLR 18 274 -145 3 949 512 259 194 0 chr12 47744322 47744492 -73513038 - ID_B1 SINE B4 -19 205 3 3 949 307 295 137 55 chr12 47744671 47744717 -73512813 - L1M4 LINE L1 -1147 4999 4954 3 949 992 72 0 7 chr12 47744717 47744856 -73512674 + (TTTTC)n Simple_repeat Simple_repeat 2 139 0 3 949 307 295 137 55 chr12 47744856 47744868 -73512662 - L1M4 LINE L1 -1193 4953 4942 3 949 1951 191 8 5 chr12 47744868 47745247 -73512283 - RLTR14 LTR ERV1 0 382 3 3 949 307 295 137 55 chr12 47745247 47745442 -73512088 - L1M4 LINE L1 -1205 4941 4724 3 949 451 372 43 31 chr12 47745453 47745614 -73511916 + RSINE1 SINE B4 3 165 0 3 949 243 0 0 0 chr12 47746048 47746075 -73511455 + (TTA)n Simple_repeat Simple_repeat 1 27 0 3 949 232 297 16 0 chr12 47746079 47746143 -73511387 - MIR SINE MIR -124 138 74 3 949 207 0 0 0 chr12 47750722 47750745 -73506785 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 3 949 1140 78 0 0 chr12 47750747 47750889 -73506641 - B1_Mus1 SINE Alu -6 142 1 4 949 1149 208 28 8 chr12 47750895 47751183 -73506347 - RMER1B Other Other -3 1339 776 4 949 380 20 20 0 chr12 47751767 47751816 -73505714 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 4 949 286 179 202 71 chr12 47751818 47751902 -73505628 - B1F1 SINE Alu -10 139 45 4 949 645 233 166 54 chr12 47752040 47752371 -73505159 + RLTR9A LTR ERVK 1 368 0 4 949 508 286 87 58 chr12 47752718 47752926 -73504604 - B3 SINE B2 0 216 3 4 949 593 245 0 26 chr12 47753744 47753895 -73503635 + B1_Mur3 SINE Alu 2 148 -1 4 949 973 296 30 28 chr12 47753964 47754427 -73503103 + Lx6 LINE L1 96 559 -7169 4 949 11896 205 56 42 chr12 47754423 47757432 -73500098 + Lx6 LINE L1 859 3850 -2030 4 949 291 54 0 0 chr12 47757432 47757469 -73500061 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 949 11896 201 59 43 chr12 47757469 47758196 -73499334 + Lx6 LINE L1 3851 4654 -1226 4 949 6998 100 20 15 chr12 47758199 47759595 -73497935 - L1_Mus3 LINE L1 -5 6633 5221 4 949 5138 222 70 11 chr12 47759595 47761669 -73495861 + Lx6 LINE L1 4643 6839 -621 4 949 1682 242 23 2 chr12 47761692 47762085 -73495445 + Lx6 LINE L1 7044 7444 -16 4 949 307 112 80 22 chr12 47763208 47763345 -73494185 + (TCTA)n Simple_repeat Simple_repeat 1 145 0 4 949 194 105 0 26 chr12 47765348 47765387 -73492143 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 949 882 292 73 23 chr12 47765657 47765915 -73491615 - B4 SINE B4 -1 291 21 4 949 483 274 0 0 chr12 47765915 47766017 -73491513 + MTE2b LTR MaLR 1 102 -277 4 949 859 319 43 23 chr12 47766020 47766319 -73491211 + MTE2b LTR MaLR 70 374 -5 4 949 227 313 12 12 chr12 47770105 47770189 -73487341 - Charlie24 DNA MER1_type -31 2419 2336 4 949 8146 85 9 36 chr12 47770298 47771348 -73486182 - L1_Mur1 LINE L1 -186 5700 4664 4 949 1155 69 7 0 chr12 47771348 47771493 -73486037 + B1_Mm SINE Alu 2 147 0 4 949 8146 85 9 36 chr12 47771493 47771735 -73485795 - L1_Mur1 LINE L1 -1223 4663 4442 4 949 8138 99 39 9 chr12 47771732 47772037 -73485493 + Lx3_Mus LINE L1 5711 6050 -959 4 949 390 42 0 0 chr12 47772037 47772085 -73485445 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 4 949 8138 99 39 9 chr12 47772085 47773038 -73484492 + Lx3_Mus LINE L1 6051 7006 -3 4 949 540 0 0 0 chr12 47773305 47773365 -73484165 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 949 953 254 37 46 chr12 47774354 47774680 -73482850 - BGLII_B LTR ERVK -118 323 1 4 949 222 37 0 0 chr12 47774807 47774834 -73482696 + (T)n Simple_repeat Simple_repeat 1 27 0 4 949 383 283 73 69 chr12 47775698 47775887 -73481643 - B2_Mm2 SINE B2 -9 207 2 4 949 393 39 0 0 chr12 47775941 47775992 -73481538 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 949 1387 261 71 5 chr12 47776915 47777308 -73480222 + MTD LTR MaLR 1 419 0 4 949 396 0 0 0 chr12 47778088 47778132 -73479398 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 949 415 322 6 28 chr12 47778155 47778334 -73479196 + CT-rich Low_complexity Low_complexity 2 176 0 4 949 431 143 10 39 chr12 47780171 47780273 -73477257 + Lx LINE L1 6552 6650 -4 4 949 862 273 21 30 chr12 47780362 47780596 -73476934 - B4 SINE B4 0 292 61 4 949 216 323 0 58 chr12 47780737 47780806 -73476724 + ID4_ SINE ID 4 68 -15 4 949 681 13 0 0 chr12 47780812 47780890 -73476640 + (GAA)n Simple_repeat Simple_repeat 1 78 0 4 949 235 315 56 0 chr12 47783737 47783826 -73473704 + MIRm SINE MIR 5 98 -178 4 949 288 133 0 0 chr12 47784083 47784143 -73473387 + (T)n Simple_repeat Simple_repeat 1 60 0 4 949 180 176 0 0 chr12 47787459 47787493 -73470037 + CT-rich Low_complexity Low_complexity 3 36 0 4 949 1296 101 5 21 chr12 47789319 47789512 -73468018 - B2_Mm1t SINE B2 -3 190 1 4 949 23 0 0 0 chr12 47793869 47793892 -73463638 + AT_rich Low_complexity Low_complexity 1 23 0 4 949 307 39 58 0 chr12 47794523 47794575 -73462955 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 4 949 266 0 29 0 chr12 47795430 47795464 -73462066 + (CAAAC)n Simple_repeat Simple_repeat 1 35 0 4 949 21 36 0 0 chr12 47796265 47796293 -73461237 + AT_rich Low_complexity Low_complexity 1 28 0 4 949 203 103 0 81 chr12 47797797 47797871 -73459659 + A-rich Low_complexity Low_complexity 2 69 0 4 949 1500 120 8 4 chr12 47803568 47803802 -73453728 + L1_Mus3 LINE L1 6401 6635 -3 4 949 207 0 0 0 chr12 47803977 47804000 -73453530 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 4 949 550 302 70 30 chr12 47804653 47804854 -73452676 - B3 SINE B2 -6 210 2 4 949 22 0 0 0 chr12 47806038 47806060 -73451470 + AT_rich Low_complexity Low_complexity 1 22 0 4 949 294 333 22 0 chr12 47806223 47806313 -73451217 - L2 LINE L2 -963 2456 2365 4 949 387 0 0 0 chr12 47806500 47806543 -73450987 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 949 28 79 0 0 chr12 47806959 47807022 -73450508 + AT_rich Low_complexity Low_complexity 1 63 0 4 949 190 330 77 43 chr12 47808146 47808263 -73449267 - L2a LINE L2 -27 3399 3279 4 949 1254 111 16 5 chr12 47809821 47810011 -73447519 + B2_Mm2 SINE B2 1 192 -3 4 949 384 321 144 39 chr12 47810079 47810384 -73447146 + MLT1A1 LTR MaLR 4 340 -68 4 949 215 344 78 96 chr12 47810629 47811244 -73446286 - L2a LINE L2 -1346 2073 1470 4 949 351 0 0 0 chr12 47811479 47811518 -73446012 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 4 949 216 184 0 0 chr12 47812546 47812595 -73444935 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 949 21 57 0 0 chr12 47814319 47814354 -73443176 + AT_rich Low_complexity Low_complexity 1 35 0 4 949 212 186 0 23 chr12 47814613 47814657 -73442873 + A-rich Low_complexity Low_complexity 3 45 0 4 949 609 142 0 0 chr12 47815882 47816009 -73441521 + (TC)n Simple_repeat Simple_repeat 2 128 0 4 949 351 0 0 0 chr12 47816009 47816048 -73441482 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 949 21 0 0 0 chr12 47817415 47817436 -73440094 + AT_rich Low_complexity Low_complexity 1 21 0 4 949 524 255 0 0 chr12 47817570 47817672 -73439858 - B1_Mur1 SINE Alu -5 144 43 4 949 194 286 92 35 chr12 47818471 47818558 -73438972 + L2c LINE L2 3126 3217 -170 4 949 28 95 0 0 chr12 47818640 47818724 -73438806 + AT_rich Low_complexity Low_complexity 1 84 0 4 949 22 70 0 0 chr12 47821373 47821416 -73436114 + AT_rich Low_complexity Low_complexity 1 43 0 4 949 273 29 0 0 chr12 47822553 47822587 -73434943 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 949 432 0 0 0 chr12 47824944 47824992 -73432538 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 949 1413 186 11 15 chr12 47824998 47825270 -73432260 - RLTR15 LTR ERVK -88 271 1 4 949 1632 118 111 0 chr12 47825276 47825556 -73431974 - ORR1A4 LTR MaLR 0 329 19 4 949 241 352 45 109 chr12 47825785 47826005 -73431525 - L2b LINE L2 -1 3374 3169 4 949 304 352 28 21 chr12 47826334 47826476 -73431054 + RSINE1 SINE B4 1 143 -22 4 949 198 0 0 0 chr12 47826481 47826503 -73431027 + (CACCT)n Simple_repeat Simple_repeat 4 25 0 4 949 414 0 0 0 chr12 47826613 47826659 -73430871 + (TAA)n Simple_repeat Simple_repeat 1 46 0 4 949 431 319 60 32 chr12 47826706 47827020 -73430510 - L1MB4 LINE L1 -316 5864 5542 4 949 261 286 45 45 chr12 47827329 47827417 -73430113 - RSINE1 SINE B4 0 165 78 4 949 265 298 42 21 chr12 47827626 47827770 -73429760 - L1MB4 LINE L1 -989 5157 5011 4 949 24 32 0 0 chr12 47827861 47827892 -73429638 + AT_rich Low_complexity Low_complexity 1 31 0 4 949 402 21 0 0 chr12 47829508 47829555 -73427975 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 949 2518 148 38 2 chr12 47829786 47830205 -73427325 - Lx3C LINE L1 -2 6974 6541 4 949 284 224 94 0 chr12 47830728 47830813 -73426717 - B1F SINE Alu 0 149 57 4 949 731 282 49 39 chr12 47830767 47831024 -73426506 + B4A SINE B4 35 286 -6 4 949 24 53 0 0 chr12 47831164 47831202 -73426328 + AT_rich Low_complexity Low_complexity 1 38 0 4 949 315 0 0 0 chr12 47832939 47832974 -73424556 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 949 513 0 0 0 chr12 47832974 47833030 -73424500 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 949 22 35 0 0 chr12 47833440 47833469 -73424061 + AT_rich Low_complexity Low_complexity 1 29 0 4 949 25 51 0 0 chr12 47833718 47833757 -73423773 + AT_rich Low_complexity Low_complexity 1 39 0 4 949 561 68 0 0 chr12 47834230 47834304 -73423226 + (TCCC)n Simple_repeat Simple_repeat 1 74 0 4 949 1333 122 27 5 chr12 47834315 47834538 -73422992 - Lx2 LINE L1 0 6997 6770 4 949 867 322 48 7 chr12 47834861 47835155 -73422375 + RCHARR1 DNA MER1_type 47 352 -622 4 949 749 244 82 41 chr12 47835173 47835442 -73422088 + RCHARR1 DNA MER1_type 463 742 -232 4 949 312 267 13 0 chr12 47835455 47835530 -73422000 - PB1D7 SINE Alu -12 108 33 4 949 414 291 98 22 chr12 47835529 47835754 -73421776 + RCHARR1 DNA MER1_type 733 974 0 4 949 403 271 72 22 chr12 47836406 47836631 -73420899 + L1M2 LINE L1 4905 5140 -1000 4 949 340 178 14 14 chr12 47836681 47836755 -73420775 + Lx7 LINE L1 7611 7684 -12 4 949 1838 181 221 63 chr12 47836778 47837518 -73420012 + RMER6C LTR ERVK 1 706 -14 4 949 536 140 6 171 chr12 47837518 47837682 -73419848 + Lx3C LINE L1 6833 6969 -7 4 949 278 208 52 10 chr12 47837739 47837836 -73419694 + L1M2 LINE L1 5114 5214 -929 4 949 869 256 19 0 chr12 47837946 47838157 -73419373 + B3 SINE B2 2 216 0 4 949 461 275 132 9 chr12 47838178 47838527 -73419003 + L1M2 LINE L1 5369 5786 -517 4 949 27 0 0 0 chr12 47839469 47839496 -73418034 + AT_rich Low_complexity Low_complexity 1 27 0 4 949 22 70 0 0 chr12 47839515 47839558 -73417972 + AT_rich Low_complexity Low_complexity 1 43 0 4 949 360 200 0 0 chr12 47839563 47839638 -73417892 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 4 950 228 273 169 11 chr12 47842116 47842205 -73415325 - RSINE1 SINE B4 -5 160 58 4 950 209 264 0 0 chr12 47842462 47842515 -73415015 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 950 715 310 70 49 chr12 47842518 47842803 -73414727 - B4A SINE B4 0 292 2 4 950 21 0 0 0 chr12 47843576 47843597 -73413933 + AT_rich Low_complexity Low_complexity 1 21 0 4 950 21 89 0 0 chr12 47843838 47843894 -73413636 + AT_rich Low_complexity Low_complexity 1 56 0 4 950 490 295 111 43 chr12 47844498 47844895 -73412635 - Cheshire DNA MER1_type -800 1620 1197 4 950 7703 62 10 1 chr12 47845101 47846076 -73411454 + L1Md_F2 LINE L1 5587 6570 -12 4 950 275 376 87 13 chr12 47846210 47846439 -73411091 - Cheshire DNA MER1_type -2065 355 110 4 950 21 0 0 0 chr12 47846459 47846480 -73411050 + AT_rich Low_complexity Low_complexity 1 21 0 5 950 459 63 0 0 chr12 47846480 47846543 -73410987 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 950 228 271 77 66 chr12 47847019 47847110 -73410420 + PB1D10 SINE Alu 15 106 -11 5 950 226 243 29 0 chr12 47847125 47847195 -73410335 + ID4 SINE ID 3 74 -9 5 950 1053 95 0 0 chr12 47847565 47847702 -73409828 + B1_Mus2 SINE Alu 2 138 -9 5 950 243 0 0 0 chr12 47847702 47847729 -73409801 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 950 3041 49 29 3 chr12 47849688 47850074 -73407456 - MTA_Mm LTR MaLR 0 396 1 5 950 4365 182 36 15 chr12 47850178 47851042 -73406488 - Lx4B LINE L1 -361 6697 5816 5 950 625 157 282 17 chr12 47851042 47851223 -73406307 + Lx4B LINE L1 6784 7012 -46 5 950 254 375 37 28 chr12 47851390 47851497 -73406033 + PB1D10 SINE Alu 1 108 -9 5 950 402 39 0 0 chr12 47851497 47851549 -73405981 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 950 247 342 0 37 chr12 47851695 47851777 -73405753 + LTR75 LTR ERVL 80 158 -404 5 950 322 346 119 45 chr12 47851860 47852253 -73405277 + L1M5 LINE L1 5313 5738 -441 5 950 2559 299 92 13 chr12 47852554 47853085 -73404445 + Lx9 LINE L1 6358 6939 -705 5 950 828 118 0 0 chr12 47853085 47853212 -73404318 + (TA)n Simple_repeat Simple_repeat 2 128 0 5 950 2559 299 92 13 chr12 47853212 47853699 -73403831 + Lx9 LINE L1 6923 7455 -189 5 950 480 18 0 0 chr12 47853699 47853756 -73403774 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 950 591 355 77 24 chr12 47853756 47853855 -73403675 + Lx9 LINE L1 7327 7442 -31 5 950 199 418 0 11 chr12 47854541 47854633 -73402897 + L2b LINE L2 3268 3358 -17 5 950 228 331 81 59 chr12 47855316 47855502 -73402028 + MLT1D LTR MaLR 1 190 -315 5 950 359 270 176 16 chr12 47855562 47855807 -73401723 + B4A SINE B4 1 284 -8 5 950 405 0 0 0 chr12 47855822 47855867 -73401663 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 950 240 317 136 16 chr12 47855993 47856118 -73401412 + MLT1D LTR MaLR 344 483 -22 5 950 24 53 0 0 chr12 47856165 47856203 -73401327 + AT_rich Low_complexity Low_complexity 1 38 0 5 950 24 0 0 0 chr12 47857050 47857074 -73400456 + AT_rich Low_complexity Low_complexity 1 24 0 5 950 22 35 0 0 chr12 47857105 47857134 -73400396 + AT_rich Low_complexity Low_complexity 1 29 0 5 950 1676 306 103 14 chr12 47857383 47858199 -73399331 + Lx8 LINE L1 6360 7248 -225 5 950 468 123 0 0 chr12 47858763 47858836 -73398694 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 950 202 61 61 0 chr12 47859062 47859095 -73398435 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 950 21 0 0 0 chr12 47860898 47860919 -73396611 + AT_rich Low_complexity Low_complexity 1 21 0 5 950 22 35 0 0 chr12 47861333 47861362 -73396168 + AT_rich Low_complexity Low_complexity 1 29 0 5 950 270 0 0 0 chr12 47862012 47862042 -73395488 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 950 335 352 8 0 chr12 47862709 47862831 -73394699 + GA-rich Low_complexity Low_complexity 6 128 0 5 950 252 0 0 0 chr12 47862913 47862941 -73394589 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 950 186 128 0 0 chr12 47863963 47864002 -73393528 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 950 308 202 25 25 chr12 47864202 47864283 -73393247 - MIRb SINE MIR -48 220 140 5 950 180 0 0 0 chr12 47864284 47864304 -73393226 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 950 22 0 0 0 chr12 47865005 47865027 -73392503 + AT_rich Low_complexity Low_complexity 1 22 0 5 950 486 165 0 0 chr12 47867388 47867467 -73390063 + AmnSINE1 SINE SINE 429 507 -68 5 950 22 0 0 0 chr12 47868321 47868343 -73389187 + AT_rich Low_complexity Low_complexity 1 22 0 5 950 2781 79 29 46 chr12 47868343 47868755 -73388775 - L1_Mus2 LINE L1 0 6566 6162 5 950 313 256 22 55 chr12 47870758 47870849 -73386681 + BC1_Mm scRNA scRNA 3 90 -62 5 950 332 273 0 0 chr12 47872451 47872528 -73385002 + ID4 SINE ID 3 79 -4 5 950 198 0 0 0 chr12 47872584 47872606 -73384924 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 950 1151 210 204 13 chr12 47873414 47873713 -73383817 - Lx9 LINE L1 -1002 6642 6287 5 950 660 231 112 12 chr12 47873764 47874014 -73383516 + Lx9 LINE L1 7366 7640 -4 5 950 515 246 52 0 chr12 47874262 47874396 -73383134 + Lx7 LINE L1 7198 7338 -358 5 950 1119 56 5 63 chr12 47874458 47874649 -73382881 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 950 2443 233 52 31 chr12 47874727 47875397 -73382133 + Lx9 LINE L1 6779 7462 -182 5 950 446 214 17 0 chr12 47875413 47875530 -73382000 + Lx9 LINE L1 7517 7635 -9 5 950 788 223 45 20 chr12 47875569 47875770 -73381760 + B3 SINE B2 4 209 -7 5 950 792 96 0 0 chr12 47876601 47876716 -73380814 + (TA)n Simple_repeat Simple_repeat 1 115 0 5 950 294 143 0 0 chr12 47876756 47876805 -73380725 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 950 1290 90 53 0 chr12 47877102 47877291 -73380239 - L1Md_F2 LINE L1 -11 6571 6373 5 950 5116 205 61 39 chr12 47877366 47877827 -73379703 + Lx9 LINE L1 6354 6812 -832 5 950 1872 70 0 27 chr12 47877827 47878090 -73379440 + L1_Mus1 LINE L1 6312 6567 0 5 950 5116 205 61 39 chr12 47878090 47878865 -73378665 + Lx9 LINE L1 6813 7618 -26 5 950 335 258 28 64 chr12 47880062 47880180 -73377350 + PB1D10 SINE Alu 1 115 -34 5 950 1404 58 0 64 chr12 47880249 47880451 -73377079 + L1_Mus1 LINE L1 6377 6565 -2 5 950 3735 92 4 13 chr12 47880689 47881219 -73376311 - L1_Mus2 LINE L1 -2 6564 6040 5 950 207 343 87 10 chr12 47881827 47881930 -73375600 - MIRb SINE MIR -48 220 110 5 950 24 0 0 0 chr12 47882448 47882472 -73375058 + AT_rich Low_complexity Low_complexity 1 24 0 5 950 508 325 51 23 chr12 47882483 47882700 -73374830 + MER44D DNA MER2_type 16 237 -468 5 950 521 257 156 27 chr12 47882739 47882995 -73374535 + MER44D DNA MER2_type 337 625 -80 5 950 22 70 0 0 chr12 47882998 47883041 -73374489 + AT_rich Low_complexity Low_complexity 1 43 0 5 950 750 53 0 0 chr12 47883850 47883945 -73373585 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 5 950 5745 66 0 13 chr12 47884525 47885280 -73372250 + L1Md_F2 LINE L1 5835 6579 -3 5 950 264 149 0 0 chr12 47885304 47885351 -73372179 + (A)n Simple_repeat Simple_repeat 1 47 0 5 950 1889 284 78 36 chr12 47885355 47886405 -73371125 + L1_Mur3 LINE L1 2181 3274 -2606 5 950 2638 171 25 40 chr12 47886405 47886923 -73370607 - RLTR11A LTR ERVK -2 526 17 5 950 1851 171 41 0 chr12 47886995 47887339 -73370191 + Lx LINE L1 6293 6650 -4 5 950 2311 184 30 5 chr12 47887376 47887780 -73369750 - MTC LTR MaLR -7 414 1 5 950 2566 264 81 19 chr12 47887799 47888809 -73368721 + L1_Mur3 LINE L1 3444 4516 -1364 5 950 2207 285 107 52 chr12 47888845 47889967 -73367563 + Lx8 LINE L1 6281 7464 -9 5 950 217 217 16 16 chr12 47890087 47890148 -73367382 + (TAA)n Simple_repeat Simple_repeat 3 63 0 5 950 395 281 119 57 chr12 47890150 47890327 -73367203 - B3 SINE B2 0 216 29 5 950 231 283 70 9 chr12 47893946 47894060 -73363470 + Lx8 LINE L1 7352 7472 -1 5 950 186 250 0 0 chr12 47894182 47894238 -73363292 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 950 237 347 40 20 chr12 47894319 47894419 -73363111 - Tigger11a DNA MER2_type -243 492 391 5 950 355 325 71 30 chr12 47895360 47895528 -73362002 + HAL1-3A_ME LINE L1 2284 2458 -400 5 950 401 278 207 0 chr12 47897428 47897597 -73359933 + ID_B1 SINE B4 2 205 -19 5 950 549 163 130 65 chr12 47898456 47898640 -73358890 + Lx9 LINE L1 7449 7644 0 5 950 342 279 113 33 chr12 47899618 47899918 -73357612 + L1M1 LINE L1 5334 5657 -643 5 950 21 36 0 0 chr12 47899986 47900014 -73357516 + AT_rich Low_complexity Low_complexity 1 28 0 5 950 333 0 0 0 chr12 47900179 47900216 -73357314 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 950 348 60 58 23 chr12 47900609 47900695 -73356835 + (CAAAAA)n Simple_repeat Simple_repeat 6 94 0 5 950 252 302 114 54 chr12 47900700 47900997 -73356533 - L1MA9 LINE L1 -207 6105 5791 5 950 2888 71 5 32 chr12 47900997 47901404 -73356126 + MTA_Mm LTR MaLR 1 396 0 5 950 295 291 106 20 chr12 47901765 47901916 -73355614 - L2 LINE L2 -793 2626 2463 5 950 230 294 124 29 chr12 47902503 47902608 -73354922 + PB1D10 SINE Alu 1 115 -2 5 950 31 26 0 0 chr12 47905900 47905938 -73351592 + AT_rich Low_complexity Low_complexity 1 38 0 5 950 22 0 0 0 chr12 47906109 47906131 -73351399 + AT_rich Low_complexity Low_complexity 1 22 0 5 950 207 0 0 0 chr12 47907889 47907912 -73349618 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 950 198 71 0 0 chr12 47907918 47907946 -73349584 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 5 950 22 88 0 0 chr12 47907976 47908033 -73349497 + AT_rich Low_complexity Low_complexity 1 57 0 5 950 462 18 0 0 chr12 47908692 47908747 -73348783 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 950 417 95 0 0 chr12 47908792 47908855 -73348675 + (CATA)n Simple_repeat Simple_repeat 1 63 0 5 950 201 39 0 0 chr12 47909308 47909334 -73348196 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 950 22 35 0 0 chr12 47910943 47910972 -73346558 + AT_rich Low_complexity Low_complexity 1 29 0 5 950 29 60 0 0 chr12 47911996 47912046 -73345484 + AT_rich Low_complexity Low_complexity 1 50 0 5 950 365 213 0 9 chr12 47912285 47912394 -73345136 + (TA)n Simple_repeat Simple_repeat 2 109 0 5 950 183 219 122 0 chr12 47914833 47914874 -73342656 + L4 LINE RTE 1453 1498 -531 5 950 235 113 0 36 chr12 47917112 47917167 -73340363 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 5 950 21 0 0 0 chr12 47917772 47917793 -73339737 + AT_rich Low_complexity Low_complexity 1 21 0 5 950 309 242 10 10 chr12 47919498 47919594 -73337936 + G-rich Low_complexity Low_complexity 3 98 0 5 950 318 50 0 0 chr12 47919826 47919866 -73337664 + (T)n Simple_repeat Simple_repeat 1 40 0 5 950 237 336 13 38 chr12 47919964 47920122 -73337408 + G-rich Low_complexity Low_complexity 3 156 0 5 950 238 229 0 41 chr12 47920141 47920315 -73337215 + (CCG)n Simple_repeat Simple_repeat 1 166 0 5 950 42 77 0 0 chr12 47920327 47920418 -73337112 + GC_rich Low_complexity Low_complexity 1 91 0 5 950 215 204 0 0 chr12 47920815 47920859 -73336671 + L4 LINE RTE 1986 2029 0 6 950 235 219 0 0 chr12 47921066 47921107 -73336423 - L3b LINE CR1 -19 463 423 6 950 337 284 125 33 chr12 47921074 47921194 -73336336 - MIR3 SINE MIR -31 177 47 6 950 2348 143 37 20 chr12 47922503 47922908 -73334622 - MTC LTR MaLR -9 412 1 6 950 280 223 66 28 chr12 47924648 47924754 -73332776 + Lx8 LINE L1 7357 7466 -7 6 950 331 278 108 19 chr12 47924974 47925187 -73332343 - L1MA5 LINE L1 -310 5990 5759 6 950 945 316 38 35 chr12 47926331 47926649 -73330881 - RCHARR1 DNA MER1_type -655 319 1 6 950 415 233 30 28 chr12 47926846 47926968 -73330562 - B1F1 SINE Alu -26 123 10 6 950 574 168 16 16 chr12 47926996 47927123 -73330407 + CT-rich Low_complexity Low_complexity 3 129 0 6 950 356 346 76 55 chr12 47927205 47927480 -73330050 - B4 SINE B4 -11 281 1 6 950 4790 139 14 4 chr12 47927556 47928313 -73329217 + Lx2 LINE L1 6227 6991 -6 6 950 581 297 87 67 chr12 47928370 47928792 -73328738 + L1MB5 LINE L1 5745 6170 -14 6 950 251 214 87 33 chr12 47929198 47929290 -73328240 + B1F SINE Alu 45 141 -8 6 950 28 48 0 0 chr12 47929340 47929382 -73328148 + AT_rich Low_complexity Low_complexity 1 42 0 6 950 351 65 0 0 chr12 47929509 47929555 -73327975 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 950 283 429 0 85 chr12 47929557 47929608 -73327922 - RSINE1 SINE B4 -25 140 94 6 950 4250 111 9 3 chr12 47929608 47930249 -73327281 - L1_Mus3 LINE L1 -5 6633 5989 6 950 283 429 0 85 chr12 47930249 47930350 -73327180 - RSINE1 SINE B4 -72 93 1 6 950 251 273 246 15 chr12 47930536 47930670 -73326860 + RLTR42-int LTR ERVK 1234 1398 -4124 6 950 831 136 13 0 chr12 47930831 47930985 -73326545 - Lx2B LINE L1 -9 6991 6836 6 950 542 292 90 0 chr12 47931344 47931488 -73326042 + B3A SINE B2 1 157 -41 6 950 330 26 0 0 chr12 47931495 47931534 -73325996 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 950 239 254 16 0 chr12 47931738 47931801 -73325729 + MLT1J1 LTR MaLR 373 436 -8 6 950 1125 251 95 58 chr12 47931835 47932181 -73325349 + ORR1D2 LTR MaLR 2 360 -10 6 950 549 328 5 31 chr12 47932297 47932492 -73325038 + MTE2b LTR MaLR 8 197 -182 6 950 356 301 94 41 chr12 47932559 47932729 -73324801 - B3A SINE B2 -16 182 4 6 950 565 227 148 7 chr12 47932732 47932887 -73324643 + MTE2b LTR MaLR 202 378 -1 6 950 1177 314 71 31 chr12 47932888 47933634 -73323896 - L1MB4 LINE L1 -17 6163 5388 6 950 550 320 11 52 chr12 47933642 47933833 -73323697 - 7SK RNA RNA -128 203 21 6 950 180 0 0 0 chr12 47934128 47934148 -73323382 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 950 857 104 7 56 chr12 47934274 47934416 -73323114 - RLTR10B LTR ERVK 0 292 158 6 950 313 291 175 19 chr12 47934474 47934628 -73322902 - L1MB4 LINE L1 -1085 5061 4884 6 950 465 301 28 0 chr12 47934713 47934856 -73322674 + B1_Mur2 SINE Alu 2 148 -1 6 950 307 226 0 0 chr12 47935297 47935350 -73322180 - ID_B1 SINE B4 -19 205 153 6 950 252 0 0 0 chr12 47935521 47935549 -73321981 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 950 243 79 0 0 chr12 47935940 47935978 -73321552 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 6 950 243 0 0 0 chr12 47936518 47936545 -73320985 + (T)n Simple_repeat Simple_repeat 1 27 0 6 950 411 259 37 25 chr12 47937456 47937598 -73319932 + B1_Mur1 SINE Alu 9 143 -6 6 950 21 0 0 0 chr12 47937611 47937632 -73319898 + AT_rich Low_complexity Low_complexity 1 21 0 6 950 294 183 0 0 chr12 47938465 47938536 -73318994 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 950 336 24 0 0 chr12 47938682 47938723 -73318807 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 950 471 281 54 8 chr12 47938756 47938885 -73318645 + RSINE1 SINE B4 2 136 -29 6 950 3199 53 2 0 chr12 47939087 47939482 -73318048 + MTA_Mm LTR MaLR 1 396 0 6 950 379 222 40 18 chr12 47940363 47940511 -73317019 + L1MA4A LINE L1 5765 5918 -382 6 950 1189 272 91 34 chr12 47941804 47942242 -73315288 + Lx9 LINE L1 6979 7441 -203 6 950 363 23 0 0 chr12 47942245 47942289 -73315241 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 950 1582 145 102 29 chr12 47942570 47942883 -73314647 + RMER6C LTR ERVK 1 336 -384 6 950 459 0 0 0 chr12 47942908 47942959 -73314571 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 950 432 200 0 24 chr12 47942959 47943082 -73314448 + G-rich Low_complexity Low_complexity 5 124 0 6 950 1695 168 84 47 chr12 47943082 47943464 -73314066 + RMER6C LTR ERVK 295 690 0 6 950 243 0 0 0 chr12 47943492 47943519 -73314011 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 950 281 362 144 11 chr12 47945796 47945983 -73311547 + Tigger5 DNA MER2_type 1 212 -2194 6 950 443 295 36 23 chr12 47946198 47946393 -73311137 + MLT1F1 LTR MaLR 340 532 -37 6 950 401 329 38 13 chr12 47946728 47946885 -73310645 + MLT1F1-int LTR MaLR 228 388 -1021 6 950 1058 209 0 0 chr12 47946908 47947104 -73310426 + URR1A DNA MER1_type 27 222 -4 6 950 238 380 28 7 chr12 47947331 47947474 -73310056 + MLT1F1-int LTR MaLR 377 522 -887 6 950 362 372 95 37 chr12 47947977 47948273 -73309257 + MLT1F1-int LTR MaLR 1007 1319 -90 6 950 16289 85 11 8 chr12 47948445 47951407 -73306123 + L1Md_A LINE L1 455 3422 -2461 6 950 5952 74 4 1 chr12 47951403 47952191 -73305339 + L1Md_A LINE L1 5094 5883 0 6 950 1776 58 33 0 chr12 47952200 47952440 -73305090 + L1Md_F3 LINE L1 6335 6582 -2 6 950 390 42 0 0 chr12 47952825 47952873 -73304657 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 6 950 2494 116 5 5 chr12 47952873 47953246 -73304284 - Lx3A LINE L1 -15 6966 6594 6 950 5428 81 11 160 chr12 47953246 47953512 -73304018 + L1_Mur1 LINE L1 3824 4090 -1796 6 950 1073 113 0 18 chr12 47953512 47953683 -73303847 + BGLII LTR ERVK 254 421 0 6 950 5428 81 11 160 chr12 47953683 47954225 -73303305 + L1_Mur1 LINE L1 4091 4636 -1250 6 950 396 0 0 0 chr12 47954225 47954269 -73303261 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 6 950 5428 81 11 160 chr12 47954269 47954391 -73303139 + L1_Mur1 LINE L1 4637 4761 -1125 6 950 2588 122 12 17 chr12 47954500 47954918 -73302612 - Lx4A LINE L1 -906 6152 5737 6 950 5021 142 50 16 chr12 47954918 47955789 -73301741 + Lx4A LINE L1 6155 7055 -3 6 950 2879 97 2 21 chr12 47955824 47956247 -73301283 - Lx2 LINE L1 -980 6017 5603 6 950 2097 123 15 0 chr12 47956247 47956572 -73300958 + Lx2 LINE L1 6667 6996 -1 6 950 464 252 75 56 chr12 47956905 47957119 -73300411 - Lx8 LINE L1 -6 7467 7250 6 950 427 231 92 25 chr12 47957403 47957523 -73300007 - Lx7 LINE L1 -316 7380 7253 6 950 316 331 96 60 chr12 47957789 47958123 -73299407 - ORR1E LTR MaLR -10 349 4 6 950 21 71 0 0 chr12 47958618 47958660 -73298870 + AT_rich Low_complexity Low_complexity 1 42 0 6 950 24 0 0 0 chr12 47958769 47958793 -73298737 + AT_rich Low_complexity Low_complexity 1 24 0 6 950 882 36 0 0 chr12 47959248 47959358 -73298172 + (CTA)n Simple_repeat Simple_repeat 1 110 0 6 950 1746 228 97 33 chr12 47959545 47960120 -73297410 + L1MC2 LINE L1 5501 6112 -232 6 950 239 207 0 147 chr12 47960225 47960293 -73297237 - B4 SINE B4 -18 274 217 6 950 1193 264 24 63 chr12 47960368 47960780 -73296750 - RMER10A LTR ERVL -2 440 45 6 950 378 265 128 78 chr12 47960780 47960960 -73296570 + Lx5 LINE L1 6849 7037 -13 6 950 512 290 148 30 chr12 47961042 47961305 -73296225 + Lx8 LINE L1 6315 6608 -865 6 950 1397 305 35 65 chr12 47961316 47961807 -73295723 - RMER15 LTR ERVL -36 539 64 6 950 1535 290 20 71 chr12 47961948 47962509 -73295021 + Lx8 LINE L1 6600 7131 -342 6 950 1342 225 74 52 chr12 47962511 47962667 -73294863 + ORR1D1 LTR MaLR 1 155 -219 6 950 1220 232 190 96 chr12 47962667 47962957 -73294573 + RMER6D LTR ERVK 1 352 -368 6 950 186 71 0 0 chr12 47962957 47962985 -73294545 + (CAGTT)n Simple_repeat Simple_repeat 4 31 0 6 950 1220 232 190 96 chr12 47962985 47963352 -73294178 + RMER6D LTR ERVK 353 720 0 6 950 1342 225 74 52 chr12 47963352 47963561 -73293969 + ORR1D1 LTR MaLR 156 374 0 6 950 565 14 27 0 chr12 47963767 47963841 -73293689 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 950 664 262 111 15 chr12 47964078 47964403 -73293127 + L1MC3 LINE L1 7406 7761 -24 6 950 303 351 103 69 chr12 47965004 47965295 -73292235 - MT2A LTR ERVL -2 531 231 6 950 186 43 0 0 chr12 47965297 47965320 -73292210 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 6 950 1241 299 29 0 chr12 47965360 47965708 -73291822 - MERVL_2A-int LTR ERVL -2034 3727 3370 6 950 1096 270 128 26 chr12 47965731 47966415 -73291115 - MERVL_2A-int LTR ERVL -2987 2774 2021 6 950 542 320 9 60 chr12 47966639 47966872 -73290658 - MERVL_2A-int LTR ERVL -4063 1694 1474 6 950 296 319 0 32 chr12 47966880 47966974 -73290556 - MT2A LTR ERVL -149 384 294 6 950 229 0 83 0 chr12 47966974 47967010 -73290520 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 950 431 382 23 66 chr12 47967010 47967315 -73290215 - MT2A LTR ERVL -236 297 6 6 950 234 313 45 0 chr12 47967511 47967578 -73289952 + B3A SINE B2 22 91 -107 6 950 23 0 0 0 chr12 47967820 47967843 -73289687 + AT_rich Low_complexity Low_complexity 1 23 0 6 950 476 254 0 51 chr12 47967873 47968051 -73289479 + Lx7 LINE L1 7378 7546 -150 6 950 6536 183 65 10 chr12 47968084 47969651 -73287879 + Lx5 LINE L1 5388 7050 0 6 950 252 365 167 0 chr12 47970402 47970528 -73287002 + RSINE1 SINE B4 3 149 -16 6 118 814 321 64 18 chr12 47972138 47972528 -73285002 - MER57F LTR ERV1 -26 410 3 6 951 9131 243 40 43 chr12 47972554 47974875 -73282655 - Lx6 LINE L1 -1 7459 5110 6 951 1173 33 0 7 chr12 47974875 47975028 -73282502 - L1Md_F2 LINE L1 -12 6570 6419 6 951 9131 195 41 85 chr12 47975028 47976016 -73281514 - Lx6 LINE L1 -771 5109 4251 6 951 2093 45 52 0 chr12 47976016 47976283 -73281247 - L1Md_F3 LINE L1 -1 6583 6303 6 951 9131 195 41 85 chr12 47976283 47977037 -73280493 - Lx6 LINE L1 -1630 4250 3478 6 951 2004 206 14 14 chr12 47977035 47977538 -73279992 - Lx6 LINE L1 -4517 1363 861 6 951 888 159 25 5 chr12 47977674 47977865 -73279665 + Lx LINE L1 6428 6634 -2 6 951 638 100 10 0 chr12 47978404 47978504 -73279026 + (GA)n Simple_repeat Simple_repeat 1 101 0 6 951 3188 204 98 79 chr12 47978590 47979477 -73278053 + RMER13B LTR ERVK 5 908 0 6 951 432 207 0 0 chr12 47979489 47979505 -73278025 + T-rich Low_complexity Low_complexity 101 116 0 6 951 1361 56 6 0 chr12 47979505 47979684 -73277846 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 951 432 207 0 0 chr12 47979684 47979724 -73277806 + T-rich Low_complexity Low_complexity 61 100 0 6 951 1298 73 6 0 chr12 47979724 47979903 -73277627 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 951 432 207 0 0 chr12 47979903 47979961 -73277569 + T-rich Low_complexity Low_complexity 3 60 0 6 951 1021 97 21 0 chr12 47979961 47980105 -73277425 - B1_Mm SINE Alu 0 147 1 6 951 878 309 117 13 chr12 47980490 47980798 -73276732 + MTE2b LTR MaLR 20 359 -20 7 951 22 56 0 0 chr12 47980832 47980868 -73276662 + AT_rich Low_complexity Low_complexity 1 36 0 7 951 191 384 44 60 chr12 47981872 47982055 -73275475 + L2a LINE L2 3047 3226 -200 7 951 693 255 233 34 chr12 47982382 47982678 -73274852 + ORR1E LTR MaLR 1 355 -4 7 951 285 320 85 54 chr12 47982980 47983109 -73274421 + MIR3 SINE MIR 70 202 -6 7 951 657 369 48 18 chr12 47983847 47984184 -73273346 + MLT2D LTR ERVL 20 366 -48 7 951 753 293 82 75 chr12 47984233 47984646 -73272884 + RMER15 LTR ERVL 1 416 -159 7 951 245 337 61 51 chr12 47984523 47984720 -73272810 - RMER15 LTR ERVL -375 200 2 7 951 376 252 70 83 chr12 47984859 47985015 -73272515 + RMER15 LTR ERVL 422 575 0 7 951 2341 204 169 15 chr12 47987009 47987318 -73270212 + RMER6C LTR ERVK 1 323 -367 7 951 717 88 0 0 chr12 47987318 47987420 -73270110 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 7 951 2341 204 169 15 chr12 47987420 47987697 -73269833 + RMER6C LTR ERVK 324 676 -14 7 951 23 68 0 0 chr12 47988646 47988690 -73268840 + AT_rich Low_complexity Low_complexity 1 44 0 7 951 209 108 27 0 chr12 47989422 47989459 -73268071 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 7 951 3577 59 0 0 chr12 47990044 47990485 -73267045 - L1_Mm LINE L1 -83 5800 5360 7 951 440 319 35 21 chr12 47990928 47991069 -73266461 - B1F SINE Alu 0 149 7 7 951 1091 246 47 7 chr12 47991386 47991665 -73265865 - RMER15 LTR ERVL -2 573 284 7 951 2335 151 27 16 chr12 47991672 47992281 -73265249 + RMER19A LTR ERVK 8 737 0 7 951 462 241 68 47 chr12 47992357 47992505 -73265025 - RMER15 LTR ERVL -403 172 22 7 951 827 284 94 4 chr12 47992690 47992966 -73264564 + MLT1A0 LTR MaLR 4 304 -61 7 951 452 282 119 20 chr12 47992976 47993148 -73264382 - B3A SINE B2 -16 179 1 7 951 799 209 135 6 chr12 47993171 47993349 -73264181 - ORR1B1 LTR MaLR 0 394 194 7 951 1357 152 102 34 chr12 47993400 47993782 -73263748 + RMER17C LTR ERVK 3 410 0 7 951 256 219 39 54 chr12 47994074 47994204 -73263326 - Lx9 LINE L1 -8 7636 7509 7 951 247 72 0 82 chr12 47994276 47994337 -73263193 + T-rich Low_complexity Low_complexity 6 61 0 7 951 3350 245 57 13 chr12 47994354 47995176 -73262354 - Lx9 LINE L1 -382 7262 6405 7 951 559 189 0 86 chr12 47995889 47996051 -73261479 - Lx4A LINE L1 -1 7057 6910 7 951 960 81 73 0 chr12 47996516 47996652 -73260878 + B1_Mus1 SINE Alu 3 148 0 7 951 13603 105 29 18 chr12 47997073 48000000 -73257530 + L1VL2 LINE L1 66 3023 -592 7 951 7016 148 23 3 chr12 48000001 48001222 -73256308 + L1_Mur2 LINE L1 3319 4563 -1314 1 951 3831 129 3 10 chr12 48001223 48001817 -73255713 + Lx LINE L1 6062 6651 -3 2 951 244 252 128 40 chr12 48002515 48002664 -73254866 - L3 LINE CR1 -1632 2857 2696 3 951 412 191 0 0 chr12 48003001 48003069 -73254461 - U4 snRNA snRNA -77 68 1 4 951 180 176 0 0 chr12 48005569 48005603 -73251927 + CT-rich Low_complexity Low_complexity 3 36 0 5 951 21 0 0 0 chr12 48006481 48006502 -73251028 + AT_rich Low_complexity Low_complexity 1 21 0 6 951 907 203 38 88 chr12 48006760 48006998 -73250532 - URR1A DNA MER1_type 0 226 1 7 951 1920 42 0 4 chr12 48007023 48007261 -73250269 - L1Md_F2 LINE L1 -3 6579 6343 8 951 1420 35 0 6 chr12 48007261 48007433 -73250097 + L1Md_F2 LINE L1 6172 6342 -240 8 951 1661 83 13 4 chr12 48008282 48008349 -73249181 - L1_Mus1 LINE L1 -1 6566 6498 9 951 405 0 0 0 chr12 48008349 48008394 -73249136 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 951 1661 83 13 4 chr12 48008394 48008557 -73248973 - L1_Mus1 LINE L1 -70 6497 6335 9 951 587 39 39 0 chr12 48008557 48008635 -73248895 + L1_Mus1 LINE L1 5907 5987 -580 1 951 1305 137 8 80 chr12 48008635 48008897 -73248633 - Lx2 LINE L1 -13 6984 6742 1 951 1492 150 72 21 chr12 48008921 48009307 -73248223 + ORR1A2 LTR MaLR 1 343 -51 1 951 1153 273 60 30 chr12 48009514 48009880 -73247650 + MTD LTR MaLR 43 419 0 1 951 406 296 58 93 chr12 48010489 48010694 -73246836 - B3 SINE B2 -13 203 6 1 951 1472 276 64 24 chr12 48011843 48012541 -73244989 - L1MC2 LINE L1 -1722 6063 5323 1 951 248 351 13 13 chr12 48012570 48012645 -73244885 - ID4_ SINE ID -5 78 4 1 951 383 322 111 32 chr12 48012694 48012973 -73244557 - HAL1 LINE L1 -1325 1182 882 1 951 260 386 70 0 chr12 48013995 48014109 -73243421 + B1F SINE Alu 22 143 -6 1 951 795 203 26 0 chr12 48014214 48014367 -73243163 - RMER6D LTR ERVK 0 720 564 2 951 4727 75 9 6 chr12 48014384 48015024 -73242506 - L1Md_F2 LINE L1 -5 6577 5936 2 951 1966 34 0 0 chr12 48015024 48015258 -73242272 + L1Md_F2 LINE L1 5671 5904 -678 2 951 2741 203 20 33 chr12 48015258 48015859 -73241671 - RMER6D LTR ERVK -127 593 1 2 951 22 35 0 0 chr12 48017316 48017345 -73240185 + AT_rich Low_complexity Low_complexity 1 29 0 2 951 3655 115 32 58 chr12 48019070 48019687 -73237843 + MT2B LTR ERVL 1 601 0 2 951 327 150 0 0 chr12 48020456 48020516 -73237014 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 951 569 365 10 128 chr12 48020550 48020855 -73236675 - B4A SINE B4 -2 290 22 2 951 265 232 61 0 chr12 48021080 48021162 -73236368 - MLT1A1 LTR MaLR 0 408 322 2 951 256 65 21 42 chr12 48022797 48022845 -73234685 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 951 276 348 79 32 chr12 48023019 48023209 -73234321 + Charlie24 DNA MER1_type 1277 1475 -975 2 951 550 235 260 28 chr12 48023213 48023498 -73234032 + ORR1E LTR MaLR 5 355 -19 2 951 400 306 68 14 chr12 48023810 48023956 -73233574 + Charlie24 DNA MER1_type 1801 1954 -496 2 951 247 25 24 24 chr12 48024024 48024065 -73233465 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 951 513 320 17 64 chr12 48024607 48024837 -73232693 - MLT1B LTR MaLR -127 263 45 3 951 1219 273 66 34 chr12 48024837 48025186 -73232344 - MTD LTR MaLR 0 419 60 3 951 3920 237 53 23 chr12 48025186 48026200 -73231330 + Lx5 LINE L1 6000 7044 -6 3 951 750 78 0 0 chr12 48026693 48026795 -73230735 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 3 951 5084 183 40 11 chr12 48026800 48027810 -73229720 - Lx4B LINE L1 -12 7046 6008 3 951 2062 137 76 0 chr12 48027810 48027969 -73229561 - L1_Mur2 LINE L1 -1073 4804 4624 3 951 252 59 0 0 chr12 48027969 48028003 -73229527 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 951 2062 137 76 0 chr12 48028003 48028223 -73229307 - L1_Mur2 LINE L1 -1254 4623 4397 3 951 330 245 90 9 chr12 48028210 48028321 -73229209 + Lx5 LINE L1 6931 7050 0 3 951 716 262 263 11 chr12 48029894 48030157 -73227373 + Lx7 LINE L1 7149 7420 -276 3 951 243 122 0 0 chr12 48030157 48030206 -73227324 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 951 716 262 263 11 chr12 48030206 48030379 -73227151 + Lx7 LINE L1 7421 7695 -1 3 951 418 254 23 31 chr12 48030844 48030974 -73226556 + MLT1B LTR MaLR 262 390 0 4 951 23 0 0 0 chr12 48031249 48031272 -73226258 + AT_rich Low_complexity Low_complexity 1 23 0 4 951 22 35 0 0 chr12 48031443 48031472 -73226058 + AT_rich Low_complexity Low_complexity 1 29 0 4 951 245 51 0 25 chr12 48031607 48031647 -73225883 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 951 583 94 47 0 chr12 48031647 48031732 -73225798 - B1_Mm SINE Alu -57 90 2 4 951 357 193 44 78 chr12 48031654 48031744 -73225786 - MT2B LTR ERVL -361 240 154 4 951 261 0 0 0 chr12 48031744 48031773 -73225757 + (TTG)n Simple_repeat Simple_repeat 1 29 0 4 951 722 294 39 34 chr12 48031774 48031982 -73225548 - ID_B1 SINE B4 -10 214 6 4 951 513 308 21 0 chr12 48032070 48032213 -73225317 + MTEa-int LTR MaLR 1428 1573 -7 4 951 602 291 28 34 chr12 48032220 48032398 -73225132 + MTEa LTR MaLR 1 177 -202 4 951 645 275 11 4 chr12 48032426 48032589 -73224941 + MTEa LTR MaLR 176 344 -35 4 951 376 237 103 0 chr12 48032562 48032659 -73224871 + MTE-int LTR MaLR 1231 1337 -243 5 951 305 203 31 0 chr12 48032662 48032726 -73224804 + MTEa LTR MaLR 314 379 0 4 951 540 30 0 0 chr12 48033323 48033389 -73224141 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 951 594 0 0 0 chr12 48033389 48033454 -73224076 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 951 217 320 115 41 chr12 48034664 48034722 -73222808 + MIRb SINE MIR 27 82 -186 5 951 2944 64 0 5 chr12 48034722 48035112 -73222418 - L1Md_F2 LINE L1 -12 6570 6183 5 951 217 320 115 41 chr12 48035112 48035271 -73222259 + MIRb SINE MIR 83 260 -8 5 951 276 239 21 21 chr12 48035391 48035485 -73222045 + (TATATG)n Simple_repeat Simple_repeat 2 95 0 5 951 280 336 76 0 chr12 48035962 48036093 -73221437 - B1F2 SINE Alu -6 143 3 5 951 560 308 58 119 chr12 48036921 48037300 -73220230 + MTE2a LTR MaLR 19 374 -5 5 951 3273 202 32 29 chr12 48038964 48039678 -73217852 - Lx2B LINE L1 -1 6999 6284 5 951 2576 164 16 8 chr12 48039680 48040324 -73217206 - Lx2B LINE L1 -949 6051 5410 5 951 561 299 12 0 chr12 48040947 48041111 -73216419 + Lx8 LINE L1 6337 6502 -971 5 951 2275 66 0 29 chr12 48044800 48045112 -73212418 - L1Md_F2 LINE L1 0 6582 6280 6 951 225 157 71 0 chr12 48046397 48046496 -73211034 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 951 494 340 121 8 chr12 48047973 48048213 -73209317 - MER76 LTR ERVL -221 470 204 6 951 975 103 0 7 chr12 48048262 48048399 -73209131 + B1_Mm SINE Alu 1 136 -11 6 951 527 29 0 14 chr12 48048399 48048469 -73209061 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 6 951 920 130 11 22 chr12 48048784 48048965 -73208565 + T-rich Low_complexity Low_complexity 2 180 0 6 951 219 157 0 0 chr12 48049554 48049605 -73207925 + T-rich Low_complexity Low_complexity 1 51 0 6 951 189 0 0 0 chr12 48049890 48049911 -73207619 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 951 21 36 0 0 chr12 48050033 48050061 -73207469 + AT_rich Low_complexity Low_complexity 1 28 0 6 951 28 61 0 0 chr12 48050114 48050163 -73207367 + AT_rich Low_complexity Low_complexity 1 49 0 6 951 441 337 21 5 chr12 48050249 48050437 -73207093 + MLT2D LTR ERVL 6 196 -218 7 951 263 184 34 11 chr12 48050476 48050564 -73206966 + GA-rich Low_complexity Low_complexity 1 90 0 7 951 198 367 12 74 chr12 48050923 48051085 -73206445 - L3 LINE CR1 -707 3782 3631 7 951 524 347 184 15 chr12 48051135 48051466 -73206064 - L3 LINE CR1 -978 3511 3125 7 951 600 268 103 54 chr12 48052634 48052985 -73204545 - L3 LINE CR1 -1922 2567 2200 7 951 22 56 0 0 chr12 48053757 48053793 -73203737 + AT_rich Low_complexity Low_complexity 1 36 0 7 951 710 262 11 27 chr12 48054605 48054789 -73202741 + RMER15 LTR ERVL 391 571 -4 7 951 1231 179 43 46 chr12 48054867 48055171 -73202359 - Lx7 LINE L1 -1 7695 7393 7 951 369 0 0 0 chr12 48055174 48055215 -73202315 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 951 420 301 15 49 chr12 48055746 48055949 -73201581 - L1MA8 LINE L1 -208 6083 5888 7 951 273 188 42 0 chr12 48056100 48056148 -73201382 + L1VL4 LINE L1 186 235 -6067 7 951 5637 104 47 19 chr12 48056148 48057418 -73200112 + L1VL4 LINE L1 17 1327 -2232 7 951 249 33 0 0 chr12 48057418 48057448 -73200082 + (CAA)n Simple_repeat Simple_repeat 3 32 0 8 951 726 321 61 25 chr12 48057771 48058049 -73199481 - B4A SINE B4 0 292 5 8 951 23 33 0 0 chr12 48058057 48058087 -73199443 + AT_rich Low_complexity Low_complexity 1 30 0 8 951 21 36 0 0 chr12 48058143 48058171 -73199359 + AT_rich Low_complexity Low_complexity 1 28 0 8 951 201 256 65 65 chr12 48058402 48058494 -73199036 - L3 LINE CR1 -115 4374 4283 8 951 191 170 21 0 chr12 48058513 48058560 -73198970 + T-rich Low_complexity Low_complexity 5 52 0 8 951 556 311 312 14 chr12 48058939 48059224 -73198306 + MTE2b LTR MaLR 4 373 -6 8 951 22 35 0 0 chr12 48060604 48060633 -73196897 + AT_rich Low_complexity Low_complexity 1 29 0 8 951 23 54 0 0 chr12 48061396 48061433 -73196097 + AT_rich Low_complexity Low_complexity 1 37 0 8 951 2490 68 3 0 chr12 48062415 48062739 -73194791 - L1Md_F2 LINE L1 -3 6579 6255 8 951 1945 164 44 47 chr12 48062908 48063291 -73194239 - ORR1B1 LTR MaLR -8 386 5 9 951 1206 316 52 11 chr12 48063422 48063771 -73193759 + MTE2a LTR MaLR 17 379 0 9 951 522 313 63 72 chr12 48064084 48064495 -73193035 + MTD LTR MaLR 3 407 -12 9 951 688 276 91 30 chr12 48064726 48065539 -73191991 - L1M2 LINE L1 -679 5624 4641 9 951 632 208 40 134 chr12 48065620 48065948 -73191582 - RLTR25B LTR ERVK -6 1022 625 9 951 1022 177 92 248 chr12 48065922 48066478 -73191052 - ORR1B1-int LTR MaLR -998 965 497 9 951 1099 163 25 5 chr12 48066399 48066596 -73190934 - RLTR25A LTR ERVK -581 522 322 9 951 681 226 229 28 chr12 48066621 48066705 -73190825 - RLTR25A LTR ERVK -846 257 128 9 951 405 0 0 0 chr12 48066705 48066750 -73190780 + (TA)n Simple_repeat Simple_repeat 2 46 0 9 951 681 226 229 28 chr12 48066750 48066879 -73190651 - RLTR25A LTR ERVK -976 127 2 9 951 21 0 0 0 chr12 48068477 48068498 -73189032 + AT_rich Low_complexity Low_complexity 1 21 0 9 951 180 0 0 0 chr12 48068498 48068518 -73189012 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 9 951 283 235 12 0 chr12 48069011 48069096 -73188434 + GA-rich Low_complexity Low_complexity 1 86 0 9 951 25 0 0 0 chr12 48069186 48069211 -73188319 + AT_rich Low_complexity Low_complexity 1 25 0 1 951 186 133 0 0 chr12 48069882 48069912 -73187618 + (TTC)n Simple_repeat Simple_repeat 2 31 0 1 951 212 0 36 0 chr12 48070154 48070182 -73187348 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 951 349 279 14 122 chr12 48070456 48070603 -73186927 - MLT1I LTR MaLR -41 370 240 1 951 244 35 0 0 chr12 48070835 48070864 -73186666 - L1Md_T LINE L1 -334 6248 6220 1 951 2772 39 0 0 chr12 48070864 48071200 -73186330 + L1Md_T LINE L1 6245 6580 -2 1 951 54 0 0 0 chr12 48071721 48071775 -73185755 + AT_rich Low_complexity Low_complexity 1 54 0 1 951 1233 127 5 5 chr12 48071776 48071982 -73185548 - Lx2A1 LINE L1 -8 7000 6795 1 951 4827 134 19 12 chr12 48071982 48072834 -73184696 - MusHAL1 LINE L1 -374 2338 1481 1 951 243 112 427 0 chr12 48073415 48073504 -73184026 - Lx9 LINE L1 -1768 5876 5750 1 951 22 0 0 0 chr12 48073505 48073527 -73184003 + AT_rich Low_complexity Low_complexity 1 22 0 1 951 45 55 0 0 chr12 48074838 48074911 -73182619 + AT_rich Low_complexity Low_complexity 1 73 0 1 951 248 77 0 25 chr12 48075488 48075528 -73182002 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 951 219 36 0 0 chr12 48075530 48075558 -73181972 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 951 1671 209 19 0 chr12 48075739 48076103 -73181427 - Lx5 LINE L1 -588 5289 4919 1 951 2684 261 98 60 chr12 48076103 48077562 -73179968 + Lx5 LINE L1 5329 6818 -232 1 951 4113 106 37 5 chr12 48077574 48078189 -73179341 - L1_Mus4 LINE L1 -18 6618 5984 1 951 1492 130 24 4 chr12 48078189 48078436 -73179094 + L1_Mur2 LINE L1 5026 5277 -600 1 951 7191 93 6 30 chr12 48078439 48079508 -73178022 + L1_Mus3 LINE L1 5589 6631 -7 1 951 3983 110 4 2 chr12 48079513 48080211 -73177319 + L1_Mus4 LINE L1 5286 5985 -651 1 951 865 300 42 15 chr12 48080210 48080471 -73177059 + Lx6 LINE L1 7193 7460 0 1 951 829 286 163 20 chr12 48080527 48080933 -73176597 + MTE2a-int LTR MaLR 676 1139 -119 1 951 294 238 25 0 chr12 48081197 48081277 -73176253 + MTE2a-int LTR MaLR 1170 1251 -7 1 951 243 246 18 0 chr12 48081284 48081341 -73176189 + MTE2a LTR MaLR 1 58 -321 1 951 29 47 0 0 chr12 48081650 48081693 -73175837 + AT_rich Low_complexity Low_complexity 1 43 0 1 951 26 30 0 0 chr12 48081959 48081992 -73175538 + AT_rich Low_complexity Low_complexity 1 33 0 1 951 275 349 16 60 chr12 48082224 48082378 -73175152 + B1_Mur1 SINE Alu 6 146 -1 1 951 616 300 49 12 chr12 48082669 48082912 -73174618 + L3 LINE CR1 3515 3766 -723 1 951 22 80 0 0 chr12 48083460 48083510 -73174020 + AT_rich Low_complexity Low_complexity 1 50 0 1 951 891 178 0 0 chr12 48084765 48084934 -73172596 + GA-rich Low_complexity Low_complexity 4 172 0 1 951 262 348 35 0 chr12 48085152 48085267 -73172263 + MER5A1 DNA MER1_type 2 120 -46 1 951 4384 29 0 0 chr12 48085866 48086376 -73171154 - L1Md_T LINE L1 -1 6581 6072 1 951 661 283 228 9 chr12 48086469 48087025 -73170505 + L1MA6 LINE L1 3313 3990 -2153 1 951 284 283 18 45 chr12 48087028 48087139 -73170391 + ID_B1 SINE B4 96 203 -21 1 951 376 347 57 18 chr12 48087195 48087424 -73170106 + L1MA6 LINE L1 3974 4211 -1932 1 951 192 40 0 0 chr12 48087457 48087482 -73170048 + (CAA)n Simple_repeat Simple_repeat 1 25 0 1 951 1059 115 0 7 chr12 48087489 48087638 -73169892 + B1_Mus1 SINE Alu 1 148 0 1 951 432 82 41 0 chr12 48087685 48087758 -73169772 + L1Md_F2 LINE L1 6507 6582 0 1 951 222 211 0 0 chr12 48087911 48087949 -73169581 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1 951 852 317 95 14 chr12 48087957 48088475 -73169055 + L1MA6 LINE L1 5387 5946 -354 1 951 316 262 0 0 chr12 48088663 48088724 -73168806 + ID4 SINE ID 10 70 -13 1 951 384 22 0 0 chr12 48089024 48089069 -73168461 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 951 845 316 45 11 chr12 48089098 48089364 -73168166 - B4 SINE B4 -4 288 14 1 951 209 353 74 25 chr12 48091172 48091294 -73166236 - MIRb SINE MIR -137 131 4 1 951 2967 192 26 117 chr12 48091336 48091691 -73165839 + RMER6D LTR ERVK 1 320 -400 1 951 948 43 0 0 chr12 48091691 48091808 -73165722 + (GGA)n Simple_repeat Simple_repeat 2 118 0 1 951 2967 192 26 117 chr12 48091808 48092244 -73165286 + RMER6D LTR ERVK 321 720 0 1 951 355 325 133 18 chr12 48092278 48092638 -73164892 - Lx9 LINE L1 -484 7160 6600 1 951 414 219 0 0 chr12 48092949 48093031 -73164499 - RLTR23 LTR ERV1 -340 90 9 1 951 233 253 44 33 chr12 48093067 48093157 -73164373 - Lx9 LINE L1 -917 6727 6637 1 951 288 297 45 30 chr12 48093578 48093710 -73163820 - L3 LINE CR1 -3 4486 4353 1 951 399 59 0 0 chr12 48094982 48095033 -73162497 - MTB LTR MaLR -8 392 342 1 951 6229 137 28 20 chr12 48095051 48096137 -73161393 + Lx3C LINE L1 5876 6969 -7 1 951 581 290 99 22 chr12 48096790 48097454 -73160076 + L1_Rod LINE L1 926 1659 -4188 1 951 1099 137 33 0 chr12 48097454 48097636 -73159894 + B2_Mm2 SINE B2 2 189 -6 1 951 581 316 78 25 chr12 48097636 48097662 -73159868 + L1_Rod LINE L1 1660 1682 -4165 1 951 2287 61 3 13 chr12 48097672 48097971 -73159559 + Lx3_Mus LINE L1 5626 5921 -1088 1 951 341 169 0 61 chr12 48098036 48098056 -73159474 + B4 SINE B4 68 144 -148 1 951 391 83 0 32 chr12 48098056 48098118 -73159412 + B1_Mur4 SINE Alu 1 60 -90 1 951 395 0 0 162 chr12 48098120 48098737 -73158793 + (CAGAG)n Simple_repeat Simple_repeat 1 516 0 1 951 234 168 112 56 chr12 48098738 48098845 -73158685 + RLTR25B LTR ERVK 397 509 -519 1 951 804 38 9 0 chr12 48098782 48098887 -73158643 + B1_Mm SINE Alu 42 147 0 1 951 6583 91 104 2 chr12 48098904 48099905 -73157625 + Lx3_Mus LINE L1 5907 7009 0 1 951 835 267 81 36 chr12 48100081 48100466 -73157064 + L1_Mur3 LINE L1 2013 2414 -3466 1 951 2263 195 104 13 chr12 48100465 48101001 -73156529 + Lx5 LINE L1 5687 6271 -779 1 951 233 221 55 46 chr12 48101109 48101153 -73156377 + L1_Rod LINE L1 2500 2542 -3305 1 951 3147 48 5 2 chr12 48101153 48101546 -73155984 - L1Md_F3 LINE L1 0 6584 6191 1 951 278 261 43 17 chr12 48101546 48101650 -73155880 + L1_Rod LINE L1 2513 2621 -3256 1 951 459 285 96 89 chr12 48101645 48101938 -73155592 + L1_Rod LINE L1 5141 5435 -442 1 951 254 388 18 35 chr12 48101985 48102156 -73155374 + Lx8 LINE L1 7156 7323 -150 1 951 435 87 0 0 chr12 48102160 48102229 -73155301 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 951 542 233 152 41 chr12 48102525 48102580 -73154950 + RLTR19-int LTR ERVK 1572 1621 -3901 1 951 366 80 0 0 chr12 48102580 48102630 -73154900 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 951 542 233 152 41 chr12 48102630 48102771 -73154759 + RLTR19-int LTR ERVK 1622 1790 -3732 1 951 253 246 31 0 chr12 48102826 48102891 -73154639 + RLTR19-int LTR ERVK 1798 1864 -3658 1 118 1143 259 112 64 chr12 48103351 48104080 -73153450 + RLTR19-int LTR ERVK 1870 2874 -3263 1 952 325 283 68 129 chr12 48104216 48104480 -73153050 + RLTR19-int LTR ERVK 2946 3193 -2944 1 952 508 220 60 112 chr12 48104809 48105024 -73152506 + RLTR19-int LTR ERVK 3511 3714 -2423 1 952 468 185 73 100 chr12 48105026 48105176 -73152354 + RLTR19-int LTR ERVK 3648 3793 -2344 1 952 771 45 14 57 chr12 48105978 48106119 -73151411 + (TTCCC)n Simple_repeat Simple_repeat 3 137 0 1 952 1060 29 81 0 chr12 48106786 48106922 -73150608 - B1_Mus2 SINE Alu 0 147 1 1 952 259 287 17 42 chr12 48107407 48107527 -73150003 + Lx7 LINE L1 7579 7695 -1 1 952 26 0 0 0 chr12 48107696 48107722 -73149808 + AT_rich Low_complexity Low_complexity 1 26 0 1 952 336 94 0 0 chr12 48108363 48108416 -73149114 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 1 952 363 44 0 0 chr12 48108607 48108652 -73148878 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 952 434 286 0 8 chr12 48109945 48110065 -73147465 + CT-rich Low_complexity Low_complexity 8 127 0 1 952 347 41 20 0 chr12 48110065 48110114 -73147416 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 952 23 0 0 0 chr12 48112240 48112263 -73145267 + AT_rich Low_complexity Low_complexity 1 23 0 1 952 517 279 8 8 chr12 48112958 48113081 -73144449 - B3 SINE B2 -7 209 87 1 952 4507 93 49 0 chr12 48115397 48116050 -73141480 - L1_Mus3 LINE L1 -5 6633 5949 1 952 12010 144 4 25 chr12 48116050 48118126 -73139404 + L1_Mm LINE L1 3734 5766 -117 1 952 194 225 125 0 chr12 48118138 48118178 -73139352 + L4 LINE RTE 82 126 -1903 1 952 3114 144 87 2 chr12 48120254 48120818 -73136712 + Lx2A1 LINE L1 6396 7007 -1 1 952 207 0 0 0 chr12 48121237 48121260 -73136270 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 952 248 226 0 16 chr12 48122666 48122729 -73134801 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 952 381 271 144 23 chr12 48123971 48124145 -73133385 - MER2 DNA MER2_type -141 204 10 1 952 269 263 38 6 chr12 48125474 48125631 -73131899 + (TA)n Simple_repeat Simple_repeat 2 163 0 1 952 225 272 97 0 chr12 48125674 48125788 -73131742 + L1M2 LINE L1 5355 5479 -821 1 952 934 255 157 3 chr12 48125864 48126188 -73131342 - MTEa LTR MaLR -5 374 1 1 952 453 231 69 7 chr12 48126199 48126343 -73131187 + L1M2 LINE L1 5579 5731 -569 1 952 23 0 0 0 chr12 48126602 48126625 -73130905 + AT_rich Low_complexity Low_complexity 1 23 0 1 952 636 180 0 0 chr12 48127069 48127191 -73130339 + (TA)n Simple_repeat Simple_repeat 2 123 0 1 952 6013 54 4 4 chr12 48127369 48128126 -73129404 + L1Md_F2 LINE L1 5814 6570 -12 1 952 37257 25 0 0 chr12 48128134 48133150 -73124380 + L1Md_T LINE L1 614 5586 -297 1 952 8212 44 0 0 chr12 48133150 48134146 -73123384 + L1Md_T LINE L1 5587 6582 0 1 952 226 267 113 71 chr12 48134590 48134731 -73122799 + MLT1B LTR MaLR 11 157 -233 1 952 308 341 114 55 chr12 48134754 48134974 -73122556 + MLT1B LTR MaLR 111 343 -47 1 952 525 243 71 56 chr12 48135186 48135312 -73122218 + RMER17C-int LTR ERVK 3032 3163 -75 1 952 3681 86 42 8 chr12 48135312 48135830 -73121700 + L1_Mus3 LINE L1 6098 6633 -5 1 952 525 243 71 56 chr12 48135830 48135899 -73121631 + RMER17C-int LTR ERVK 3164 3230 -8 1 952 623 182 195 0 chr12 48135899 48136058 -73121472 + Lx4A LINE L1 6867 7056 -2 1 952 353 287 56 0 chr12 48136541 48136649 -73120881 + B3A SINE B2 8 121 -77 1 952 226 267 13 0 chr12 48136812 48136887 -73120643 - Lx9 LINE L1 0 7644 7569 1 952 185 208 42 0 chr12 48137321 48137369 -73120161 + L3 LINE CR1 2125 2174 -2315 1 952 518 301 0 70 chr12 48138807 48138950 -73118580 + B3A SINE B2 9 141 -57 1 952 324 70 0 0 chr12 48138963 48139006 -73118524 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 952 920 18 0 0 chr12 48139290 48139399 -73118131 - L1Md_F2 LINE L1 -480 5403 5295 1 952 6595 37 4 0 chr12 48139396 48140362 -73117168 + L1Md_F2 LINE L1 5406 6375 -207 1 952 610 81 0 0 chr12 48140362 48140461 -73117069 + L1Md_F2 LINE L1 6483 6581 -1 1 952 306 0 0 0 chr12 48140767 48140801 -73116729 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 952 182 176 20 0 chr12 48140849 48140900 -73116630 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1 952 357 176 0 0 chr12 48141050 48141124 -73116406 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 952 387 0 0 0 chr12 48141130 48141173 -73116357 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 952 1558 273 117 18 chr12 48141959 48142514 -73115016 + Lx6 LINE L1 6811 7420 -40 2 952 22 56 0 0 chr12 48142514 48142550 -73114980 + AT_rich Low_complexity Low_complexity 1 36 0 2 952 401 226 63 76 chr12 48143265 48143423 -73114107 - RLTR15 LTR ERVK -26 333 178 2 952 477 90 0 0 chr12 48143441 48143508 -73114022 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 952 413 91 0 29 chr12 48143537 48143605 -73113925 + (TCTCCC)n Simple_repeat Simple_repeat 1 66 0 2 952 235 252 97 8 chr12 48143606 48143730 -73113800 - RLTR15 LTR ERVK -221 138 4 2 952 439 346 100 37 chr12 48143804 48144125 -73113405 - L2 LINE L2 -849 2570 2230 2 952 233 338 0 24 chr12 48144217 48144299 -73113231 + B4 SINE B4 10 89 -203 2 952 424 314 15 38 chr12 48144817 48145005 -73112525 + L2a LINE L2 3188 3424 -2 2 952 24 53 0 0 chr12 48145172 48145210 -73112320 + AT_rich Low_complexity Low_complexity 1 38 0 2 952 7931 91 4 3 chr12 48146599 48147762 -73109768 + L1_Mur1 LINE L1 3066 4229 -1657 2 952 27 0 0 0 chr12 48147795 48147822 -73109708 + AT_rich Low_complexity Low_complexity 1 27 0 2 952 24 53 0 0 chr12 48148245 48148283 -73109247 + AT_rich Low_complexity Low_complexity 1 38 0 2 952 21 57 0 0 chr12 48149022 48149057 -73108473 + AT_rich Low_complexity Low_complexity 1 35 0 2 952 357 266 24 31 chr12 48150346 48150492 -73107038 - L1M2 LINE L1 -495 5796 5652 2 952 21 0 0 0 chr12 48150538 48150559 -73106971 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 464 283 25 0 chr12 48150887 48151007 -73106523 + B3A SINE B2 3 125 -73 2 952 344 372 13 6 chr12 48151134 48151291 -73106239 + MLT1E2 LTR MaLR 328 485 -142 2 952 304 383 39 0 chr12 48151874 48152028 -73105502 - L1M2 LINE L1 -531 5647 5488 2 952 1108 213 0 5 chr12 48152911 48153133 -73104397 + URR1A DNA MER1_type 3 223 -3 2 952 5072 116 72 7 chr12 48155599 48155710 -73101820 - Lx LINE L1 -9 6645 6532 2 952 3421 28 5 0 chr12 48155710 48156104 -73101426 + MTA_Mm LTR MaLR 1 396 0 2 952 5072 116 72 7 chr12 48156104 48156803 -73100727 - Lx LINE L1 -123 6531 5783 2 952 34092 84 8 9 chr12 48156822 48163002 -73094528 - L1Md_F2 LINE L1 0 6582 422 2 952 288 0 0 0 chr12 48163393 48163425 -73094105 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2 952 1830 77 0 4 chr12 48163464 48163713 -73093817 - L1Md_F2 LINE L1 -5 6577 6330 2 952 241 325 22 87 chr12 48165029 48165167 -73092363 + PB1D7 SINE Alu 11 139 -8 2 952 1033 115 0 0 chr12 48165657 48165805 -73091725 - B1_Mus1 SINE Alu 0 148 1 2 952 23714 76 4 7 chr12 48166135 48170046 -73087484 - L1Md_F2 LINE L1 -19 6563 2662 2 952 3424 134 105 0 chr12 48170038 48170599 -73086931 - L1Md_F2 LINE L1 -5624 992 373 2 952 24 0 0 0 chr12 48171579 48171603 -73085927 + AT_rich Low_complexity Low_complexity 1 24 0 2 952 351 44 0 0 chr12 48171657 48171702 -73085828 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 952 219 103 0 0 chr12 48172061 48172100 -73085430 + (T)n Simple_repeat Simple_repeat 1 39 0 2 952 17772 15 0 0 chr12 48172102 48174877 -73082653 - L1Md_T LINE L1 0 6582 3808 2 952 25 75 0 0 chr12 48177825 48177878 -73079652 + AT_rich Low_complexity Low_complexity 1 53 0 2 952 21 0 0 0 chr12 48178800 48178821 -73078709 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 184 293 13 39 chr12 48179311 48179389 -73078141 + L2a LINE L2 3308 3383 -43 2 952 207 0 0 0 chr12 48179900 48179923 -73077607 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 952 381 213 10 21 chr12 48180637 48180733 -73076797 - Lx4B LINE L1 -8 7050 6956 2 952 9313 154 10 6 chr12 48180737 48182876 -73074654 - L1_Mus4 LINE L1 -339 6297 4152 2 952 7972 153 4 30 chr12 48182886 48184354 -73073176 + L1_Mm LINE L1 2604 4033 -1850 2 952 1735 236 73 19 chr12 48184362 48184880 -73072650 - L1_Mur1 LINE L1 -5640 1342 797 2 952 326 370 39 0 chr12 48185501 48185628 -73071902 + ID_B1 SINE B4 91 222 -2 2 952 288 309 12 0 chr12 48186240 48186324 -73071206 + CT-rich Low_complexity Low_complexity 3 87 0 2 952 455 105 20 40 chr12 48186358 48186457 -73071073 + GA-rich Low_complexity Low_complexity 3 99 0 2 952 961 103 0 0 chr12 48186863 48186999 -73070531 + B1_Mus1 SINE Alu 3 138 -10 2 952 594 0 0 0 chr12 48186999 48187065 -73070465 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 2 952 960 135 66 6 chr12 48187485 48187691 -73069839 - Lx3A LINE L1 -883 6126 5907 2 952 205 119 16 33 chr12 48187696 48187757 -73069773 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 2 952 369 81 0 16 chr12 48187757 48187820 -73069710 - Lx3A LINE L1 -1081 5928 5867 2 952 277 321 26 70 chr12 48187820 48187846 -73069684 + RMER12 LTR ERVK 742 766 -556 2 952 5778 108 6 11 chr12 48187846 48188705 -73068825 + Lx3A LINE L1 6116 6970 -11 2 952 277 321 26 70 chr12 48188705 48188792 -73068738 + RMER12 LTR ERVK 767 850 -472 2 952 33 25 0 0 chr12 48189315 48189355 -73068175 + AT_rich Low_complexity Low_complexity 1 40 0 2 952 22 56 0 0 chr12 48189573 48189609 -73067921 + AT_rich Low_complexity Low_complexity 1 36 0 2 952 455 183 8 0 chr12 48189654 48189785 -73067745 + (TG)n Simple_repeat Simple_repeat 1 132 0 2 952 498 319 0 82 chr12 48189787 48189958 -73067572 - B3A SINE B2 -16 182 26 2 952 27 29 0 0 chr12 48191482 48191516 -73066014 + AT_rich Low_complexity Low_complexity 1 34 0 2 952 1652 221 58 60 chr12 48191551 48191836 -73065694 - MTC LTR MaLR -8 413 108 2 952 1161 48 7 0 chr12 48191836 48191982 -73065548 + B1_Mus2 SINE Alu 1 147 0 2 952 1652 221 58 60 chr12 48191982 48192110 -73065420 - MTC LTR MaLR -314 107 1 2 952 955 71 0 13 chr12 48193250 48193406 -73064124 + (GTTTG)n Simple_repeat Simple_repeat 1 154 0 2 952 1102 85 0 0 chr12 48193411 48193552 -73063978 - B1_Mus1 SINE Alu -7 141 1 2 952 551 193 16 25 chr12 48193781 48193903 -73063627 - Lx9 LINE L1 -555 7089 6969 2 952 30 0 0 0 chr12 48195287 48195317 -73062213 + AT_rich Low_complexity Low_complexity 1 30 0 2 952 670 279 64 121 chr12 48195503 48195665 -73061865 + ORR1D2 LTR MaLR 3 152 -218 2 952 264 100 0 0 chr12 48195665 48195705 -73061825 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 2 952 252 86 0 0 chr12 48195714 48195749 -73061781 + (CAT)n Simple_repeat Simple_repeat 3 37 0 2 952 670 279 64 121 chr12 48195749 48195964 -73061566 + ORR1D2 LTR MaLR 157 368 -2 2 952 186 71 0 0 chr12 48197173 48197201 -73060329 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 952 21 0 0 0 chr12 48197351 48197372 -73060158 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 266 213 119 9 chr12 48198292 48198401 -73059129 - MLT1J1 LTR MaLR -303 141 21 2 952 257 314 110 41 chr12 48198807 48198953 -73058577 + MER5A1 DNA MER1_type 6 161 -5 2 952 34 65 0 0 chr12 48199511 48199573 -73057957 + AT_rich Low_complexity Low_complexity 1 62 0 2 952 745 179 13 33 chr12 48199621 48199771 -73057759 - B1_Mus2 SINE Alu 0 147 1 2 952 182 37 37 0 chr12 48200056 48200083 -73057447 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 952 387 369 59 43 chr12 48200609 48200983 -73056547 + MLT1C LTR MaLR 85 464 -3 2 952 264 71 0 51 chr12 48201217 48201276 -73056254 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 2 952 2762 28 0 44 chr12 48201400 48201742 -73055788 - IAPLTR2b LTR ERVK 0 327 1 2 952 2056 147 19 27 chr12 48201844 48202214 -73055316 - Lx2 LINE L1 -7 6990 6624 2 952 189 0 0 0 chr12 48202225 48202246 -73055284 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2 952 234 0 0 0 chr12 48203657 48203683 -73053847 + (A)n Simple_repeat Simple_repeat 1 26 0 2 952 303 303 176 52 chr12 48203734 48203967 -73053563 - RMER15 LTR ERVL -14 561 300 2 952 63 36 0 0 chr12 48204530 48204614 -73052916 + AT_rich Low_complexity Low_complexity 1 84 0 2 952 210 37 0 0 chr12 48204614 48204641 -73052889 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 952 335 347 96 33 chr12 48205485 48205761 -73051769 + LTR16E1 LTR ERVL 274 535 -3 2 952 1189 119 11 21 chr12 48206104 48206293 -73051237 - B2_Mm2 SINE B2 -8 187 1 2 952 23 0 0 0 chr12 48206409 48206432 -73051098 + AT_rich Low_complexity Low_complexity 1 23 0 2 952 3525 236 89 61 chr12 48206433 48207667 -73049863 - Lx4A LINE L1 -2 7056 5788 2 952 3627 144 32 3 chr12 48207666 48208285 -73049245 + L1_Mur2 LINE L1 5177 5813 -64 2 952 531 31 0 0 chr12 48210223 48210288 -73047242 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 952 266 303 45 27 chr12 48210701 48210813 -73046717 + RMER15 LTR ERVL 26 139 -436 2 952 524 364 5 15 chr12 48210859 48211060 -73046470 + RMER15 LTR ERVL 337 535 -40 2 952 22 0 0 0 chr12 48211182 48211204 -73046326 + AT_rich Low_complexity Low_complexity 1 22 0 2 952 3597 138 16 7 chr12 48211727 48212304 -73045226 - Lx LINE L1 -4 6650 6069 2 952 212 256 22 0 chr12 48212662 48212752 -73044778 + (TCTCTG)n Simple_repeat Simple_repeat 3 94 0 2 952 288 152 0 0 chr12 48212836 48212902 -73044628 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 2 952 1075 87 0 0 chr12 48213000 48213138 -73044392 - B1_Mus1 SINE Alu -9 139 2 2 952 4766 152 40 6 chr12 48213277 48214175 -73043355 + L1_Mur2 LINE L1 3860 4788 -1089 2 952 279 305 17 17 chr12 48214348 48214468 -73043062 - L1MA6 LINE L1 -5 6295 6176 2 952 531 315 42 23 chr12 48215408 48215668 -73041862 - L1MA6 LINE L1 -601 5699 5435 2 952 292 281 73 0 chr12 48215748 48215830 -73041700 + MT2B LTR ERVL 181 268 -333 2 952 262 156 0 0 chr12 48215824 48215837 -73041693 + MT2B2 LTR ERVL 154 166 -418 2 952 277 254 28 14 chr12 48215837 48215909 -73041621 + PB1D9 SINE Alu 3 75 -45 2 952 229 284 11 69 chr12 48215909 48215924 -73041606 + B4 SINE B4 88 169 -123 2 952 1018 272 68 9 chr12 48215930 48216256 -73041274 + RMER6C LTR ERVK 346 690 0 2 952 231 36 0 0 chr12 48217732 48217760 -73039770 + (T)n Simple_repeat Simple_repeat 1 28 0 2 952 21 36 0 0 chr12 48218078 48218106 -73039424 + AT_rich Low_complexity Low_complexity 1 28 0 2 952 25 31 0 0 chr12 48219496 48219528 -73038002 + AT_rich Low_complexity Low_complexity 1 32 0 2 952 2358 66 6 3 chr12 48219791 48220108 -73037422 - L1_Mus1 LINE L1 0 6567 6250 2 952 656 284 63 0 chr12 48221245 48221435 -73036095 + B3 SINE B2 1 202 -14 3 952 3031 154 9 19 chr12 48221471 48222001 -73035529 - Lx3C LINE L1 -3 6973 6449 3 952 183 80 0 0 chr12 48223293 48223318 -73034212 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 952 506 353 71 27 chr12 48224092 48224386 -73033144 - ORR1E LTR MaLR -19 340 34 3 952 216 0 0 0 chr12 48225330 48225354 -73032176 + (T)n Simple_repeat Simple_repeat 1 24 0 3 952 1065 80 0 0 chr12 48225398 48225536 -73031994 - B1_Mus1 SINE Alu -10 138 1 3 952 274 306 81 37 chr12 48225908 48226230 -73031300 - L1MA8 LINE L1 -1 6290 5955 3 952 9496 98 31 5 chr12 48226277 48228718 -73028812 + Lx3A LINE L1 4495 6975 -6 3 952 21 0 0 0 chr12 48229188 48229209 -73028321 + AT_rich Low_complexity Low_complexity 1 21 0 3 952 486 88 0 0 chr12 48229258 48229326 -73028204 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 952 234 170 0 0 chr12 48229413 48229460 -73028070 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 3 952 525 32 0 0 chr12 48229470 48229533 -73027997 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 952 601 337 93 4 chr12 48229636 48229904 -73027626 + B4 SINE B4 1 292 0 3 952 356 314 175 30 chr12 48230450 48230637 -73026893 + Lx9 LINE L1 7014 7216 -428 3 952 1436 104 71 64 chr12 48230637 48230904 -73026626 - L1_Mus4 LINE L1 -1 6635 6367 3 952 356 314 175 30 chr12 48230904 48231117 -73026413 + Lx9 LINE L1 7217 7471 -173 3 952 288 77 0 0 chr12 48231138 48231177 -73026353 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 952 453 321 168 16 chr12 48232403 48232957 -73024573 + L1M5 LINE L1 2660 3297 -2849 3 952 398 345 26 0 chr12 48233230 48233346 -73024184 + ID_B1 SINE B4 80 198 -26 3 952 333 0 0 0 chr12 48233358 48233395 -73024135 + (CAAT)n Simple_repeat Simple_repeat 2 38 0 3 952 447 295 9 0 chr12 48233714 48233819 -73023711 + B3A SINE B2 17 122 -76 3 952 635 43 11 0 chr12 48234027 48234121 -73023409 + L1Md_F2 LINE L1 6475 6569 -13 3 952 21 0 0 0 chr12 48234121 48234142 -73023388 + AT_rich Low_complexity Low_complexity 1 21 0 3 952 494 31 16 0 chr12 48234281 48234345 -73023185 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 952 180 0 0 0 chr12 48234347 48234367 -73023163 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 952 21 0 0 0 chr12 48234438 48234459 -73023071 + AT_rich Low_complexity Low_complexity 1 21 0 3 953 620 276 45 5 chr12 48234826 48235048 -73022482 - L1MA4 LINE L1 -374 5926 5696 3 953 5952 92 7 4 chr12 48235987 48236815 -73020715 + RMER16-int LTR ERVK 4576 5406 0 3 953 2764 117 32 5 chr12 48236815 48237253 -73020277 + RMER16 LTR ERVK 1 450 -83 3 953 189 0 0 0 chr12 48237253 48237274 -73020256 + (A)n Simple_repeat Simple_repeat 1 21 0 3 953 1850 113 7 14 chr12 48237520 48237799 -73019731 - L1_Mus4 LINE L1 -523 6113 5837 3 953 3201 95 52 4 chr12 48237799 48238284 -73019246 + L1_Mus4 LINE L1 6123 6630 -6 3 953 33 0 0 0 chr12 48238363 48238396 -73019134 + AT_rich Low_complexity Low_complexity 1 33 0 3 953 2207 311 89 22 chr12 48238508 48239380 -73018150 + Lx8 LINE L1 6425 7355 -118 3 953 1666 116 7 7 chr12 48239381 48239651 -73017879 + Lx LINE L1 6381 6650 -4 3 953 1956 215 98 84 chr12 48239912 48240546 -73016984 - RMER1C Other Other 0 1342 700 3 953 189 0 0 0 chr12 48240581 48240602 -73016928 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 953 25 31 0 0 chr12 48242318 48242350 -73015180 + AT_rich Low_complexity Low_complexity 1 32 0 3 953 261 0 0 0 chr12 48242357 48242386 -73015144 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 953 506 277 98 0 chr12 48242415 48242527 -73015003 - B3A SINE B2 -71 127 5 3 953 24 0 0 0 chr12 48242534 48242558 -73014972 + AT_rich Low_complexity Low_complexity 1 24 0 3 953 682 210 64 0 chr12 48242654 48242811 -73014719 + URR1A DNA MER1_type 58 224 -2 3 953 886 275 64 34 chr12 48243102 48243460 -73014070 - ORR1D1 LTR MaLR -2 372 4 3 953 1168 55 0 7 chr12 48243532 48243680 -73013850 + B1_Mm SINE Alu 1 147 0 3 953 236 357 31 0 chr12 48243869 48243967 -73013563 + MIR SINE MIR 70 170 -92 3 953 306 125 0 0 chr12 48244706 48244754 -73012776 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 953 2728 319 73 14 chr12 48246551 48247685 -73009845 - Lx8 LINE L1 0 7473 6273 3 953 207 0 0 0 chr12 48247833 48247856 -73009674 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 953 2050 85 10 3 chr12 48248151 48248445 -73009085 + L1Md_F2 LINE L1 5291 5586 -297 3 953 7863 58 0 3 chr12 48248447 48249432 -73008098 + L1Md_F2 LINE L1 5589 6570 -12 3 953 400 386 8 0 chr12 48250009 48250141 -73007389 + MTE2a LTR MaLR 28 160 -219 3 953 3183 86 47 0 chr12 48250142 48250586 -73006944 - Lx LINE L1 -364 6290 5826 3 953 2143 127 11 25 chr12 48250588 48250943 -73006587 + Lx LINE L1 6302 6651 -3 3 953 296 337 59 104 chr12 48250946 48251091 -73006439 + MTE2a LTR MaLR 174 319 -60 3 953 1213 81 92 0 chr12 48251091 48251264 -73006266 - B2_Mm2 SINE B2 -6 189 1 3 953 296 337 59 104 chr12 48251264 48251320 -73006210 + MTE2a LTR MaLR 320 366 -13 3 953 312 91 0 0 chr12 48251585 48251629 -73005901 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 3 953 4054 221 43 34 chr12 48252234 48253253 -73004277 - Lx5 LINE L1 -2 7048 6021 3 953 372 312 35 42 chr12 48253259 48253403 -73004127 + RSINE1 SINE B4 19 161 -4 3 953 1111 81 0 0 chr12 48253583 48253731 -73003799 - B1_Mus1 SINE Alu 0 148 1 3 953 486 0 0 0 chr12 48254570 48254624 -73002906 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 953 414 0 0 0 chr12 48254624 48254669 -73002861 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 953 600 324 70 52 chr12 48255112 48255399 -73002131 + B4A SINE B4 1 292 0 3 953 728 357 47 8 chr12 48255556 48255920 -73001610 - Lx8 LINE L1 -269 7204 6827 3 953 272 251 191 22 chr12 48255918 48256101 -73001429 + Lx8 LINE L1 7257 7470 -3 3 953 725 226 107 125 chr12 48256437 48256589 -73000941 - RLTR9A LTR ERVK 0 368 244 3 953 3726 42 26 0 chr12 48256589 48257042 -73000488 - L1Md_T LINE L1 -1 6581 6117 3 953 725 226 107 125 chr12 48257042 48257264 -73000266 - RLTR9A LTR ERVK -125 243 1 3 953 468 0 0 0 chr12 48258014 48258066 -72999464 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 953 309 135 0 0 chr12 48258241 48258293 -72999237 + (T)n Simple_repeat Simple_repeat 1 52 0 3 953 674 255 88 5 chr12 48258329 48258522 -72999008 - B3 SINE B2 -7 209 1 3 953 1088 203 13 18 chr12 48259657 48259883 -72997647 + URR1B DNA MER1_type 1 225 0 3 953 1043 267 77 59 chr12 48260058 48260396 -72997134 + MTEb LTR MaLR 10 353 -26 3 953 1283 270 7 54 chr12 48261107 48261478 -72996052 - MTD LTR MaLR -69 338 4 3 953 330 306 14 101 chr12 48262445 48262583 -72994947 + B1F SINE Alu 24 149 0 3 953 192 290 0 75 chr12 48264966 48265033 -72992497 + L2 LINE L2 2614 2675 -744 3 953 22 0 0 0 chr12 48265715 48265737 -72991793 + AT_rich Low_complexity Low_complexity 1 22 0 3 953 298 338 25 18 chr12 48266998 48267161 -72990369 + MIR SINE MIR 98 261 -1 3 953 261 0 0 0 chr12 48267496 48267525 -72990005 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 953 405 0 0 0 chr12 48268026 48268071 -72989459 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 3 953 240 59 0 0 chr12 48268546 48268580 -72988950 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 953 790 283 148 47 chr12 48269152 48269496 -72988034 + Lx7 LINE L1 7097 7448 -248 3 953 234 0 0 0 chr12 48269496 48269522 -72988008 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 953 810 85 0 0 chr12 48269524 48269653 -72987877 + (GA)n Simple_repeat Simple_repeat 2 130 0 3 953 790 283 148 47 chr12 48269653 48269832 -72987698 + Lx7 LINE L1 7449 7676 -20 3 953 432 380 26 9 chr12 48270213 48270444 -72987086 + ORR1E LTR MaLR 1 235 -124 3 953 470 31 0 15 chr12 48270640 48270705 -72986825 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 953 325 109 31 0 chr12 48270808 48270872 -72986658 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 953 363 44 0 0 chr12 48271951 48271996 -72985534 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 953 627 81 0 0 chr12 48272003 48272089 -72985441 + (TCC)n Simple_repeat Simple_repeat 3 88 0 3 953 326 0 68 0 chr12 48272089 48272132 -72985398 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 3 953 1033 81 0 0 chr12 48272133 48272269 -72985261 - B1_Mus1 SINE Alu -12 136 1 3 953 180 0 0 0 chr12 48272289 48272309 -72985221 + (T)n Simple_repeat Simple_repeat 1 20 0 3 953 207 152 0 0 chr12 48272715 48272761 -72984769 + A-rich Low_complexity Low_complexity 3 48 0 3 953 630 390 88 19 chr12 48273093 48273561 -72983969 + MLT-int LTR MaLR 1110 1609 -126 3 953 352 167 118 12 chr12 48273789 48273874 -72983656 - HAL1-3A_ME LINE L1 -789 2069 1976 3 953 995 146 4 7 chr12 48273875 48274150 -72983380 + (TG)n Simple_repeat Simple_repeat 1 274 0 3 953 255 188 44 59 chr12 48274153 48274221 -72983309 - RMER15 LTR ERVL -114 461 395 3 953 370 333 30 0 chr12 48274317 48274449 -72983081 - RMER15-int LTR ERVL -272 4727 4592 3 953 330 296 20 20 chr12 48274740 48274840 -72982690 - Lx8 LINE L1 -1176 6297 6198 3 953 739 301 78 4 chr12 48276464 48276734 -72980796 - MLT-int LTR MaLR -942 793 504 3 953 895 251 10 19 chr12 48276746 48276953 -72980577 - B3 SINE B2 -3 213 9 3 953 325 313 16 80 chr12 48276958 48277083 -72980447 - MLT-int LTR MaLR -1193 542 426 3 953 880 254 10 0 chr12 48277103 48277300 -72980230 + Lx4A LINE L1 6858 7056 -2 3 953 283 288 46 35 chr12 48277383 48277556 -72979974 - L1M3 LINE L1 -2462 3678 3504 3 953 404 295 99 4 chr12 48278088 48278350 -72979180 - L1MEc LINE L1 -5623 777 491 3 953 313 136 0 0 chr12 48278347 48278391 -72979139 - RMER1A Other Other -889 141 98 3 953 2646 96 8 3 chr12 48278431 48278808 -72978722 + L1_Mus3 LINE L1 6246 6624 -14 3 953 504 0 0 0 chr12 48278947 48279003 -72978527 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 953 234 343 65 16 chr12 48279031 48279215 -72978315 - L1MEc LINE L1 -6097 303 111 3 953 268 174 20 3 chr12 48279515 48279576 -72977954 - Lx2 LINE L1 -182 6826 6766 3 953 3341 158 135 14 chr12 48279571 48280237 -72977293 - Lx2 LINE L1 -352 6645 5899 3 953 5332 86 36 24 chr12 48280243 48280475 -72977055 - L1VL4 LINE L1 -1234 2680 2455 3 953 206 0 69 0 chr12 48280475 48280504 -72977026 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 953 5332 131 58 13 chr12 48280504 48282201 -72975329 - L1VL4 LINE L1 -1460 2454 562 3 953 341 235 47 6 chr12 48282220 48282391 -72975139 + (TA)n Simple_repeat Simple_repeat 1 178 0 4 953 21 82 0 0 chr12 48282391 48282440 -72975090 + AT_rich Low_complexity Low_complexity 1 49 0 4 953 235 333 222 0 chr12 48282695 48282812 -72974718 - ID_B1 SINE B4 -4 220 78 4 953 252 0 0 0 chr12 48283277 48283305 -72974225 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 953 30 0 0 0 chr12 48283383 48283413 -72974117 + AT_rich Low_complexity Low_complexity 1 30 0 4 953 6489 239 36 102 chr12 48283657 48287191 -72970339 - L1_Mur3 LINE L1 -2779 3101 17 4 953 381 68 27 13 chr12 48288269 48288344 -72969186 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 4 953 333 0 0 0 chr12 48288550 48288587 -72968943 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 953 24 0 0 0 chr12 48288587 48288611 -72968919 + AT_rich Low_complexity Low_complexity 1 24 0 4 953 23 78 0 0 chr12 48288683 48288734 -72968796 + AT_rich Low_complexity Low_complexity 1 51 0 4 953 23 33 0 0 chr12 48290640 48290670 -72966860 + AT_rich Low_complexity Low_complexity 1 30 0 4 953 276 100 0 0 chr12 48291096 48291136 -72966394 + (TTA)n Simple_repeat Simple_repeat 2 41 0 4 953 8343 163 18 12 chr12 48291136 48291881 -72965649 - Lx4A LINE L1 -14 7044 6293 4 953 297 0 0 0 chr12 48291881 48291914 -72965616 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 953 10460 194 15 73 chr12 48291914 48295141 -72962389 - Lx4A LINE L1 -766 6292 3275 4 953 1401 149 8 4 chr12 48295121 48295371 -72962159 - Lx4A LINE L1 -4043 1834 1584 4 953 3824 73 4 10 chr12 48295371 48295884 -72961646 - L1Md_F2 LINE L1 0 6582 6073 4 953 1980 49 0 0 chr12 48295884 48296128 -72961402 + L1Md_F2 LINE L1 5693 5936 -646 4 953 3953 131 157 1 chr12 48296127 48297053 -72960477 - Lx4A LINE L1 -4284 1593 510 4 953 36 23 0 0 chr12 48297226 48297269 -72960261 + AT_rich Low_complexity Low_complexity 1 43 0 4 953 423 0 0 0 chr12 48297296 48297343 -72960187 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 953 1140 89 0 0 chr12 48297343 48297523 -72960007 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 953 1649 272 26 0 chr12 48297585 48298015 -72959515 - Lx9 LINE L1 -265 7379 6939 4 953 420 20 0 0 chr12 48298799 48298848 -72958682 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 953 207 163 20 20 chr12 48299327 48299362 -72958168 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 953 189 0 0 0 chr12 48299362 48299383 -72958147 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 953 207 163 20 20 chr12 48299383 48299397 -72958133 + (TA)n Simple_repeat Simple_repeat 2 16 0 4 953 1564 125 18 106 chr12 48301510 48301849 -72955681 - Lx3B LINE L1 -4 6969 6661 4 953 6960 130 26 12 chr12 48302481 48303679 -72953851 + Lx2 LINE L1 5703 6761 -236 4 953 22 56 0 0 chr12 48304577 48304613 -72952917 + AT_rich Low_complexity Low_complexity 1 36 0 4 953 427 347 24 0 chr12 48305491 48305615 -72951915 + ID_B1 SINE B4 18 144 -80 4 953 1355 78 0 0 chr12 48305615 48305821 -72951709 - L1_Mm LINE L1 -3783 2100 1895 4 953 4117 46 4 0 chr12 48305821 48306320 -72951210 + L1Md_F3 LINE L1 6070 6570 -14 4 953 245 316 25 0 chr12 48306450 48306529 -72951001 - ID4_ SINE ID -1 82 2 4 953 1047 295 5 48 chr12 48307541 48307915 -72949615 + Lx7 LINE L1 6917 7274 -422 4 953 321 338 100 42 chr12 48308444 48308685 -72948845 - L1MC4 LINE L1 -616 7426 7172 4 953 333 224 183 30 chr12 48309754 48309956 -72947574 - Lx9 LINE L1 0 7644 7412 4 953 678 58 0 0 chr12 48311030 48311117 -72946413 + (GAGAA)n Simple_repeat Simple_repeat 4 90 0 4 953 333 0 0 0 chr12 48311349 48311386 -72946144 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 953 396 0 0 0 chr12 48311415 48311459 -72946071 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 953 31 44 0 0 chr12 48311607 48311652 -72945878 + AT_rich Low_complexity Low_complexity 1 45 0 4 953 614 312 45 0 chr12 48313214 48313390 -72944140 + B3 SINE B2 3 186 -30 4 953 3711 70 0 0 chr12 48313587 48314071 -72943459 + L1Md_F2 LINE L1 6098 6581 -1 4 953 33 73 0 0 chr12 48314565 48314633 -72942897 + AT_rich Low_complexity Low_complexity 1 68 0 4 953 1696 92 42 0 chr12 48315111 48315350 -72942180 - L1_Mus1 LINE L1 -5 6562 6314 4 953 6864 57 6 5 chr12 48315350 48316234 -72941296 + L1_Mm LINE L1 4147 5031 -852 4 953 348 289 109 49 chr12 48317287 48317553 -72939977 - L1MD LINE L1 -665 5694 5413 4 953 379 302 80 93 chr12 48317588 48317964 -72939566 - L1MD LINE L1 -803 5343 4973 4 953 387 0 0 0 chr12 48319201 48319244 -72938286 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 953 585 309 51 20 chr12 48319618 48319872 -72937658 - L1MC LINE L1 -1200 4946 4685 4 953 477 139 0 38 chr12 48320094 48320199 -72937331 - Lx9 LINE L1 -4 7640 7540 4 953 24 0 0 0 chr12 48320349 48320373 -72937157 + AT_rich Low_complexity Low_complexity 1 24 0 4 953 189 0 0 0 chr12 48321129 48321150 -72936380 + (T)n Simple_repeat Simple_repeat 1 21 0 4 953 3273 136 21 10 chr12 48322627 48323146 -72934384 - Lx2 LINE L1 0 6997 6473 4 953 492 110 0 0 chr12 48323146 48323219 -72934311 + Lx2B LINE L1 6394 6466 -534 4 953 275 65 22 0 chr12 48323245 48323291 -72934239 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 953 201 178 0 0 chr12 48323549 48323594 -72933936 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 4 953 336 292 48 7 chr12 48325341 48325486 -72932044 + Charlie4a DNA MER1_type 57 207 -301 4 953 463 285 33 19 chr12 48325868 48326079 -72931451 - L1M2 LINE L1 -498 5793 5580 4 953 21 0 0 0 chr12 48326711 48326732 -72930798 + AT_rich Low_complexity Low_complexity 1 21 0 4 953 402 366 49 49 chr12 48327794 48328081 -72929449 - B4A SINE B4 -2 290 4 4 953 28 86 0 0 chr12 48329705 48329775 -72927755 + AT_rich Low_complexity Low_complexity 1 70 0 4 953 325 299 103 14 chr12 48330033 48330247 -72927283 + L1MA8 LINE L1 6017 6249 -42 4 953 271 164 0 0 chr12 48330696 48330751 -72926779 - Lx6 LINE L1 -26 7434 7380 4 953 11890 203 28 18 chr12 48330754 48333236 -72924294 - L1_Mur3 LINE L1 -917 4963 2468 4 953 2367 77 64 3 chr12 48333236 48333562 -72923968 + ORR1A1 LTR MaLR 1 346 0 4 953 9124 209 35 32 chr12 48333562 48333959 -72923571 - L1_Mur3 LINE L1 -3413 2467 2066 4 953 366 107 0 0 chr12 48333959 48334015 -72923515 + (TGG)n Simple_repeat Simple_repeat 1 56 0 4 953 9124 209 35 32 chr12 48334015 48334518 -72923012 - L1_Mur3 LINE L1 -3815 2065 1540 4 953 252 0 0 0 chr12 48334518 48334546 -72922984 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 953 9124 252 35 53 chr12 48334546 48335236 -72922294 - L1_Mur3 LINE L1 -4341 1539 880 4 953 591 294 48 4 chr12 48335389 48335638 -72921892 - L1_Mur3 LINE L1 -1548 4332 4073 4 953 258 32 0 0 chr12 48336289 48336320 -72921210 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 953 259 157 20 0 chr12 48336322 48336379 -72921151 - B1_Mus2 SINE Alu -4 145 85 4 953 379 243 9 9 chr12 48336538 48336650 -72920880 + L1Md_A LINE L1 615 726 -5998 4 953 33195 79 2 2 chr12 48336652 48341810 -72915720 + L1Md_F3 LINE L1 469 5586 -297 4 953 7839 52 2 14 chr12 48341810 48342818 -72914712 + L1Md_F3 LINE L1 5587 6582 -2 4 953 22 35 0 0 chr12 48342926 48342955 -72914575 + AT_rich Low_complexity Low_complexity 1 29 0 4 953 467 17 17 0 chr12 48343064 48343124 -72914406 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 953 670 169 132 66 chr12 48343181 48343333 -72914197 - RMER6C LTR ERVK -528 162 1 4 953 2120 203 75 4 chr12 48343338 48343836 -72913694 - RMER6-int LTR ERVK -2 3175 2653 4 953 220 348 79 36 chr12 48344037 48344177 -72913353 + MIRb SINE MIR 83 228 -40 4 953 671 0 13 0 chr12 48344400 48344479 -72913051 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 953 764 30 10 0 chr12 48344479 48344577 -72912953 + (CA)n Simple_repeat Simple_repeat 1 100 0 4 953 23 33 0 0 chr12 48344636 48344666 -72912864 + AT_rich Low_complexity Low_complexity 1 30 0 4 953 2077 194 76 37 chr12 48346720 48347206 -72910324 + RLTR16 LTR ERVK 1 505 0 4 953 250 339 99 59 chr12 48348925 48349198 -72908332 - MER2 DNA MER2_type -56 289 6 4 953 958 277 112 92 chr12 48349677 48350072 -72907458 - RMER6C LTR ERVK 0 720 336 4 953 240 86 0 0 chr12 48350072 48350107 -72907423 + (AACTG)n Simple_repeat Simple_repeat 4 38 0 4 953 958 227 136 89 chr12 48350107 48350422 -72907108 - RMER6C LTR ERVK -345 345 1 4 953 375 278 0 38 chr12 48350908 48351039 -72906491 + MT2A LTR ERVL 1 126 -407 4 953 829 163 30 106 chr12 48351106 48351177 -72906353 - RLTR20B2 LTR ERVK -376 184 115 4 953 3478 20 2 0 chr12 48351177 48351572 -72905958 - MTA_Mm LTR MaLR 0 396 1 4 953 829 163 30 106 chr12 48351572 48351699 -72905831 - RLTR20B2 LTR ERVK -446 114 1 4 953 918 245 13 40 chr12 48351699 48351914 -72905616 + RMER15 LTR ERVL 364 572 -3 4 953 22 0 0 0 chr12 48352967 48352989 -72904541 + AT_rich Low_complexity Low_complexity 1 22 0 4 953 712 76 0 0 chr12 48353020 48353112 -72904418 + B1_Mm SINE Alu 54 145 -2 4 953 1374 205 62 3 chr12 48353633 48353956 -72903574 - Lx2 LINE L1 -738 6259 5918 4 953 3011 176 41 21 chr12 48353957 48354313 -72903217 + Lx2B LINE L1 6373 6735 -265 4 953 2944 76 10 2 chr12 48354313 48354710 -72902820 - MTB LTR MaLR 0 400 1 4 953 3011 176 41 21 chr12 48354710 48354969 -72902561 + Lx2B LINE L1 6736 7000 0 4 953 561 307 59 24 chr12 48355089 48355463 -72902067 - Tigger2b DNA MER2_type -330 396 10 4 953 893 207 167 72 chr12 48355945 48355986 -72901544 - Lx9 LINE L1 -67 7577 7540 4 953 644 67 0 11 chr12 48355986 48356077 -72901453 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 4 953 1162 49 0 0 chr12 48356082 48356225 -72901305 - B1_Mus1 SINE Alu -5 143 1 4 953 893 207 167 72 chr12 48356225 48356536 -72900994 - Lx9 LINE L1 -105 7539 7185 4 953 219 175 0 0 chr12 48358473 48358530 -72899000 + CT-rich Low_complexity Low_complexity 2 58 0 4 953 2040 254 61 9 chr12 48359302 48359847 -72897683 - Lx5 LINE L1 -425 6625 6053 4 953 362 355 92 29 chr12 48359928 48360166 -72897364 - L1MD LINE L1 -694 5665 5413 4 953 297 0 0 0 chr12 48360185 48360218 -72897312 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 953 1078 83 0 0 chr12 48360218 48360355 -72897175 - B1_Mus2 SINE Alu -9 138 2 4 953 418 339 200 13 chr12 48360518 48360748 -72896782 - B4 SINE B4 -19 273 1 4 953 1019 319 41 24 chr12 48360826 48361237 -72896293 - Lx7 LINE L1 -391 7305 6888 4 953 405 311 8 8 chr12 48361257 48361380 -72896150 - Lx7 LINE L1 -907 6789 6667 4 953 215 238 92 31 chr12 48361413 48361478 -72896052 - PB1D10 SINE Alu 0 117 49 5 953 353 331 69 0 chr12 48361720 48361850 -72895680 + B1_Mur1 SINE Alu 1 139 -10 5 953 231 402 0 0 chr12 48361996 48362083 -72895447 - L2 LINE L2 -993 2426 2340 5 953 595 286 7 21 chr12 48363739 48363882 -72893648 + RSINE1 SINE B4 7 147 -18 5 953 624 106 0 0 chr12 48364841 48364935 -72892595 + (TG)n Simple_repeat Simple_repeat 2 95 0 5 954 613 218 52 23 chr12 48367165 48367339 -72890191 + L1_Rod LINE L1 4972 5150 -697 5 954 1699 211 50 81 chr12 48367337 48367883 -72889647 + L1_Rod LINE L1 5267 5795 -52 5 954 212 31 62 0 chr12 48367968 48368000 -72889530 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 5 954 285 251 16 28 chr12 48368004 48368017 -72889513 + Lx9 LINE L1 5849 5863 -434 5 954 297 0 0 0 chr12 48368017 48368050 -72889480 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 954 486 0 0 0 chr12 48368050 48368103 -72889427 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 954 899 211 0 18 chr12 48368103 48368281 -72889249 + Lx9 LINE L1 5837 6007 -1637 5 954 1764 288 24 51 chr12 48368457 48369009 -72888521 - Lx5 LINE L1 -2 7048 6512 5 954 1293 188 215 6 chr12 48369011 48369337 -72888193 + ORR1B1 LTR MaLR 1 394 0 5 954 770 176 8 0 chr12 48369342 48369473 -72888057 + L1_Mur2 LINE L1 5576 5707 -170 5 954 1653 253 87 130 chr12 48369449 48369896 -72887634 + Lx9 LINE L1 6825 7205 -439 5 954 610 115 279 0 chr12 48369896 48370000 -72887530 + B1_Mus1 SINE Alu 3 135 -13 5 954 519 17 0 0 chr12 48370000 48370060 -72887470 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 5 954 1653 253 87 130 chr12 48370060 48370462 -72887068 + Lx9 LINE L1 7206 7637 -7 5 954 1139 278 74 13 chr12 48371551 48371941 -72885589 - MTD LTR MaLR -5 414 1 5 954 357 82 0 0 chr12 48372451 48372500 -72885030 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 5 954 2707 212 36 22 chr12 48372500 48373133 -72884397 - Lx4B LINE L1 -16 7042 6401 5 954 1007 167 151 14 chr12 48373132 48373350 -72884180 + L1_Mur2 LINE L1 5016 5263 -614 5 954 212 54 0 51 chr12 48373701 48373740 -72883790 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 5 954 2574 181 29 2 chr12 48373914 48374391 -72883139 + Lx LINE L1 6145 6634 -20 5 954 1308 207 24 7 chr12 48374399 48374686 -72882844 + L1_Mur2 LINE L1 5281 5572 -305 5 954 22 0 0 0 chr12 48377680 48377702 -72879828 + AT_rich Low_complexity Low_complexity 1 22 0 5 954 23 0 0 0 chr12 48378239 48378262 -72879268 + AT_rich Low_complexity Low_complexity 1 23 0 5 954 483 100 0 0 chr12 48378533 48378603 -72878927 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 5 954 345 47 0 0 chr12 48379450 48379493 -72878037 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 954 1238 75 0 0 chr12 48380215 48380376 -72877154 + B2_Mm2 SINE B2 2 162 -33 5 954 647 27 0 0 chr12 48380376 48380449 -72877081 + L1Md_F3 LINE L1 6178 6250 -334 5 954 326 53 0 0 chr12 48380450 48380488 -72877042 + L1Md_F3 LINE L1 6213 6250 -334 5 954 2861 52 3 5 chr12 48380489 48380859 -72876671 + L1Md_F3 LINE L1 6213 6581 -3 5 954 35310 36 0 0 chr12 48381020 48386671 -72870859 + L1Md_T LINE L1 1 5589 -297 5 954 8648 10 0 36 chr12 48386671 48387466 -72870064 + L1Md_T LINE L1 5590 6362 -223 5 954 1624 21 16 0 chr12 48387466 48387656 -72869874 - B2_Mm1a SINE B2 0 193 1 5 954 8648 10 0 36 chr12 48387656 48387893 -72869637 + L1Md_T LINE L1 6363 6585 0 5 954 439 372 15 0 chr12 48388138 48388275 -72869255 + ID_B1 SINE B4 84 222 -2 5 954 481 214 24 0 chr12 48388529 48388655 -72868875 - Lx9 LINE L1 -2 7642 7514 5 954 30 0 0 0 chr12 48389227 48389257 -72868273 + AT_rich Low_complexity Low_complexity 1 30 0 5 954 641 241 21 0 chr12 48389454 48389599 -72867931 - B1_Mur3 SINE Alu -1 148 1 5 954 396 0 0 0 chr12 48389732 48389776 -72867754 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 954 1716 311 63 40 chr12 48389813 48390299 -72867231 - Lx9 LINE L1 -241 7403 6915 5 954 1843 218 9 30 chr12 48390299 48390729 -72866801 + MTC LTR MaLR 1 421 0 5 954 1716 311 63 40 chr12 48390729 48391066 -72866464 - Lx9 LINE L1 -730 6914 6561 5 954 526 254 124 63 chr12 48391165 48391464 -72866066 - L1MA6 LINE L1 -6 6294 5978 5 954 200 245 73 36 chr12 48391606 48391661 -72865869 + MIRm SINE MIR 218 274 -2 5 954 466 375 52 23 chr12 48392618 48392926 -72864604 + LFSINE_Vert SINE SINE 5 321 -138 5 954 1180 200 0 9 chr12 48393802 48394029 -72863501 + URR1A DNA MER1_type 1 225 -1 5 954 2492 110 5 10 chr12 48394114 48394510 -72863020 + L1_Mus4 LINE L1 6237 6630 -6 5 954 346 304 149 39 chr12 48394611 48395019 -72862511 - L1ME1 LINE L1 -46 6132 5680 5 954 461 281 54 7 chr12 48395092 48395266 -72862264 - B3A SINE B2 -4 191 4 5 954 342 45 0 0 chr12 48395450 48395494 -72862036 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 954 183 80 0 0 chr12 48395495 48395520 -72862010 + (CCA)n Simple_repeat Simple_repeat 1 25 0 5 954 1214 206 96 9 chr12 48395521 48395845 -72861685 + L1_Mur3 LINE L1 2069 2420 -3460 5 954 620 65 0 0 chr12 48395879 48395956 -72861574 + L1Md_T LINE L1 6086 6162 -420 5 954 298 70 0 44 chr12 48396038 48396083 -72861447 + ORR1D2 LTR MaLR 328 370 0 5 954 332 112 35 0 chr12 48396314 48396378 -72861152 + L1_Mur3 LINE L1 2407 2473 -3407 5 954 16753 222 48 50 chr12 48397156 48399865 -72857665 + Lx6 LINE L1 877 3482 -2395 5 954 249 33 0 0 chr12 48399865 48399895 -72857635 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5 954 16753 219 53 45 chr12 48399895 48402547 -72854983 + Lx6 LINE L1 3483 6151 -1309 5 954 1840 59 4 0 chr12 48402547 48402784 -72854746 + L1Md_F2 LINE L1 6342 6579 -3 5 954 4781 245 96 63 chr12 48402784 48403787 -72853743 + Lx6 LINE L1 6152 7271 -189 5 954 716 22 11 0 chr12 48403788 48403878 -72853652 + (TC)n Simple_repeat Simple_repeat 1 91 0 5 954 1905 255 124 11 chr12 48403926 48404545 -72852985 - Lx7 LINE L1 -372 7324 6636 5 954 3968 43 19 0 chr12 48404627 48405112 -72852418 - L1Md_A LINE L1 -2 6580 6087 5 954 3719 31 0 0 chr12 48405112 48405561 -72851969 + L1_Mm LINE L1 4233 4681 -1202 5 954 490 204 139 0 chr12 48405557 48405729 -72851801 - Lx9 LINE L1 0 7644 7449 5 954 1098 79 0 7 chr12 48405878 48406018 -72851512 - B1_Mm SINE Alu -8 139 1 5 954 36 62 0 0 chr12 48406099 48406163 -72851367 + AT_rich Low_complexity Low_complexity 1 64 0 5 954 402 283 61 17 chr12 48406250 48406365 -72851165 - B1_Mur2 SINE Alu -19 130 11 5 954 298 376 0 0 chr12 48406401 48406494 -72851036 - B1F1 SINE Alu -55 94 2 5 954 261 0 0 0 chr12 48406572 48406601 -72850929 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5 954 7817 68 1 2 chr12 48406646 48407930 -72849600 - L1Md_F2 LINE L1 0 6582 5299 5 954 4776 167 30 14 chr12 48407916 48409063 -72848467 - Lx4B LINE L1 -900 6158 4989 5 954 26 50 0 0 chr12 48409097 48409137 -72848393 + AT_rich Low_complexity Low_complexity 1 40 0 5 954 2696 80 28 3 chr12 48409267 48409631 -72847899 - L1_Mus3 LINE L1 -360 6278 5906 5 954 2473 119 5 0 chr12 48409631 48410002 -72847528 + L1_Mus3 LINE L1 6261 6633 -5 5 954 221 377 8 24 chr12 48411791 48411916 -72845614 - L2 LINE L2 -563 2856 2734 5 954 274 181 129 24 chr12 48411961 48412046 -72845484 + RMER17D LTR ERVK 239 332 -557 5 954 252 0 0 0 chr12 48412052 48412080 -72845450 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 954 396 356 17 33 chr12 48412955 48413135 -72844395 + MIR SINE MIR 70 246 -16 5 954 381 22 0 0 chr12 48414323 48414369 -72843161 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 954 247 300 22 0 chr12 48414385 48414475 -72843055 + CT-rich Low_complexity Low_complexity 6 97 0 5 954 204 97 0 0 chr12 48415461 48415492 -72842038 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 954 3409 20 5 0 chr12 48415676 48416070 -72841460 - MTA_Mm LTR MaLR 0 396 1 5 954 3138 127 22 16 chr12 48416592 48417096 -72840434 + Lx3_Mus LINE L1 6500 7006 -3 5 954 204 237 17 0 chr12 48419556 48419615 -72837915 + A-rich Low_complexity Low_complexity 3 62 0 5 954 25 31 0 0 chr12 48419658 48419690 -72837840 + AT_rich Low_complexity Low_complexity 1 32 0 5 954 264 111 42 0 chr12 48420430 48420502 -72837028 + T-rich Low_complexity Low_complexity 3 77 0 5 954 1222 34 7 0 chr12 48420503 48420649 -72836881 - B1_Mm SINE Alu 0 147 1 5 954 542 333 95 54 chr12 48420669 48421018 -72836512 - ERVL-B4-int LTR ERVL -1209 4505 4143 5 954 6677 123 28 12 chr12 48421035 48422169 -72835361 - Lx LINE L1 -6 6648 5498 5 954 4518 185 5 18 chr12 48422169 48422837 -72834693 + L1_Mm LINE L1 4626 5296 -587 5 954 4866 88 1 1 chr12 48422837 48423489 -72834041 + L1_Mus2 LINE L1 5914 6565 -1 5 954 4518 185 5 18 chr12 48423489 48423707 -72833823 + L1_Mm LINE L1 5297 5500 -383 5 954 352 339 127 25 chr12 48423760 48424075 -72833455 - ERVL-B4-int LTR ERVL -1624 4090 3744 5 954 382 321 73 0 chr12 48424348 48424485 -72833045 - ERVL-B4-int LTR ERVL -2340 3374 3228 5 954 180 0 0 0 chr12 48424491 48424511 -72833019 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 954 867 20 0 0 chr12 48424511 48424611 -72832919 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 954 329 313 0 10 chr12 48424647 48424747 -72832783 - ERVL-B4-int LTR ERVL -2271 3214 3116 5 954 733 351 61 38 chr12 48424758 48425232 -72832298 - ERVL-B4-int LTR ERVL -2582 3132 2648 5 954 21 36 0 0 chr12 48425772 48425800 -72831730 + AT_rich Low_complexity Low_complexity 1 28 0 5 954 688 374 81 34 chr12 48426004 48426196 -72831334 + Lx8 LINE L1 6754 6966 -507 5 954 2211 52 0 10 chr12 48426196 48426485 -72831045 - L1Md_A LINE L1 0 6582 6297 5 954 688 371 90 30 chr12 48426485 48426931 -72830599 + Lx8 LINE L1 6967 7438 -35 5 954 1057 110 0 0 chr12 48426969 48427114 -72830416 - B1_Mm SINE Alu -2 145 1 5 954 1190 77 24 0 chr12 48427495 48427892 -72829638 + (TAGA)n Simple_repeat Simple_repeat 1 406 0 5 954 516 101 0 0 chr12 48427914 48428003 -72829527 + (TTTTG)n Simple_repeat Simple_repeat 2 90 0 5 954 6373 94 21 1 chr12 48428633 48429535 -72827995 - L1_Mus1 LINE L1 0 6567 5648 5 954 968 96 45 0 chr12 48429535 48429692 -72827838 - RLTR10 LTR ERVK 0 390 227 5 954 294 150 0 0 chr12 48429822 48429882 -72827648 - RLTR10 LTR ERVK -72 318 259 5 954 2171 35 3 108 chr12 48429888 48430239 -72827291 - RLTR10 LTR ERVK -76 314 1 5 954 8894 15 0 0 chr12 48430241 48431234 -72826296 - RLTR10-int LTR ERVK -3 1984 992 5 954 7879 28 2 1 chr12 48431329 48432253 -72825277 - RLTR10-int LTR ERVK -1034 953 1 5 954 906 127 25 6 chr12 48432255 48432414 -72825116 - RLTR10 LTR ERVK -2 388 227 5 954 294 150 0 0 chr12 48432525 48432585 -72824945 - RLTR10 LTR ERVK -72 318 259 5 954 2171 35 3 108 chr12 48432591 48432942 -72824588 - RLTR10 LTR ERVK -76 314 1 5 954 4422 141 1 128 chr12 48432944 48434409 -72823121 - L1_Mm LINE L1 -232 5651 4496 5 954 10392 140 25 14 chr12 48434407 48437040 -72820490 - L1VL1 LINE L1 -3177 2706 51 5 954 187 322 21 65 chr12 48437149 48437242 -72820288 + L4 LINE RTE 1785 1873 -156 5 954 330 370 58 33 chr12 48437249 48437492 -72820038 + MLT1A0 LTR MaLR 1 249 -116 6 954 298 143 0 0 chr12 48437587 48437636 -72819894 + L1Md_F3 LINE L1 6408 6456 -128 6 954 5507 44 12 0 chr12 48438062 48438748 -72818782 + L1Md_A LINE L1 5888 6581 -1 6 954 66 0 0 0 chr12 48439222 48439288 -72818242 + AT_rich Low_complexity Low_complexity 1 66 0 6 954 819 274 214 16 chr12 48439447 48439751 -72817779 + ORR1D2 LTR MaLR 3 366 -4 6 954 1435 230 61 166 chr12 48440253 48440893 -72816637 - RMER15 LTR ERVL -2 573 1 6 954 369 246 61 87 chr12 48440923 48441119 -72816411 - L1M5 LINE L1 -2853 3293 3103 6 954 49 43 0 0 chr12 48441122 48441192 -72816338 + AT_rich Low_complexity Low_complexity 1 70 0 6 954 2154 286 21 6 chr12 48441417 48441945 -72815585 - Lx6 LINE L1 0 7460 6925 6 954 339 113 0 0 chr12 48442475 48442528 -72815002 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 954 671 349 133 19 chr12 48442640 48443105 -72814425 - Lx8 LINE L1 0 7473 6956 6 954 3120 287 70 46 chr12 48443184 48444069 -72813461 - Lx7 LINE L1 0 7696 6781 6 954 3833 78 29 0 chr12 48444069 48444579 -72812951 + L1_Mus1 LINE L1 6043 6567 0 6 954 3120 287 70 46 chr12 48444579 48444970 -72812560 - Lx7 LINE L1 -916 6780 6390 6 954 268 286 33 0 chr12 48445027 48445118 -72812412 + Lx7 LINE L1 6089 6182 -1514 6 954 1145 229 71 0 chr12 48445230 48445567 -72811963 - Lx9 LINE L1 -9 7635 7275 6 954 969 261 32 61 chr12 48445576 48445919 -72811611 + Lx9 LINE L1 6903 7235 -409 6 954 241 30 0 0 chr12 48446467 48446500 -72811030 + L1MC4a LINE L1 7840 7872 -10 6 954 367 321 31 12 chr12 48446541 48446702 -72810828 + RSINE1 SINE B4 2 165 0 6 954 406 231 24 104 chr12 48446823 48447006 -72810524 + L1MC1 LINE L1 5865 6034 -140 6 954 1904 265 77 57 chr12 48447064 48447839 -72809691 - Lx9 LINE L1 -9 7635 6845 6 954 387 0 0 0 chr12 48451498 48451541 -72805989 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 954 254 223 41 41 chr12 48452106 48452204 -72805326 + CT-rich Low_complexity Low_complexity 4 101 0 6 954 242 301 0 52 chr12 48452266 48452343 -72805187 - PB1D10 SINE Alu -2 115 43 6 954 28 0 0 0 chr12 48453213 48453241 -72804289 + AT_rich Low_complexity Low_complexity 1 28 0 6 954 2974 117 16 0 chr12 48455023 48455519 -72802011 - L1_Mur1 LINE L1 -3809 2077 1574 6 954 38198 41 8 6 chr12 48455495 48461632 -72795898 - L1Md_T LINE L1 -1 6581 441 6 954 2564 99 10 15 chr12 48461645 48461824 -72795706 - L1_Mur1 LINE L1 -4276 1610 1433 6 954 207 0 0 0 chr12 48461824 48461847 -72795683 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 954 5490 142 21 16 chr12 48461847 48462952 -72794578 - L1_Mur1 LINE L1 -4454 1432 165 6 954 1760 92 40 7 chr12 48462944 48463099 -72794431 + L1_Mur1 LINE L1 5113 5265 -621 6 954 342 45 0 0 chr12 48463099 48463143 -72794387 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 954 326 23 23 0 chr12 48463143 48463186 -72794344 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 954 1760 92 40 7 chr12 48463186 48463304 -72794226 + L1_Mur1 LINE L1 5266 5394 -492 6 954 456 19 0 0 chr12 48463304 48463357 -72794173 + (TAA)n Simple_repeat Simple_repeat 2 54 0 6 954 756 152 292 0 chr12 48463670 48463848 -72793682 + RMER6C LTR ERVK 1 230 -460 6 954 909 217 0 5 chr12 48463965 48464155 -72793375 + RMER6C LTR ERVK 502 690 0 6 954 466 62 0 0 chr12 48464178 48464243 -72793287 + B1_Mus2 SINE Alu 75 139 -8 6 954 180 77 0 0 chr12 48464243 48464269 -72793261 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 954 254 0 83 0 chr12 48464273 48464309 -72793221 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 6 954 26 0 0 0 chr12 48464880 48464906 -72792624 + AT_rich Low_complexity Low_complexity 1 26 0 6 954 465 95 14 0 chr12 48465290 48465364 -72792166 - L1_Mus2 LINE L1 0 6566 6492 6 954 633 275 0 8 chr12 48465478 48465610 -72791920 + B1_Mur1 SINE Alu 12 142 -7 6 954 1132 35 7 0 chr12 48466728 48466873 -72790657 - B1_Mus2 SINE Alu 0 147 2 6 954 1167 41 0 20 chr12 48467530 48467679 -72789851 + B1_Mm SINE Alu 2 147 0 6 954 441 170 0 0 chr12 48468654 48468766 -72788764 + CT-rich Low_complexity Low_complexity 1 112 0 6 954 268 341 166 7 chr12 48468865 48469096 -72788434 - Lx8 LINE L1 -398 7246 6973 6 954 189 0 0 0 chr12 48469181 48469202 -72788328 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 954 443 316 121 40 chr12 48469205 48469403 -72788127 - B3 SINE B2 -2 214 1 6 954 1056 292 199 30 chr12 48469477 48471559 -72785971 - Lx6 LINE L1 -1549 5911 3473 6 954 226 0 59 0 chr12 48472564 48472598 -72784932 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 954 1191 159 121 26 chr12 48472696 48472960 -72784570 + Lx3C LINE L1 6688 6976 0 6 954 181 91 44 22 chr12 48473392 48473437 -72784093 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 6 954 1195 303 86 53 chr12 48475057 48475734 -72781796 + Lx8 LINE L1 6186 6884 -589 6 954 29 47 0 0 chr12 48476071 48476114 -72781416 + AT_rich Low_complexity Low_complexity 1 43 0 6 954 4753 52 5 3 chr12 48476770 48477370 -72780160 - L1Md_F2 LINE L1 -2 6580 5980 6 954 243 0 0 0 chr12 48477776 48477803 -72779727 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6 954 677 135 8 0 chr12 48477813 48477939 -72779591 + (CA)n Simple_repeat Simple_repeat 2 128 0 6 954 321 288 117 82 chr12 48478044 48478246 -72779284 - MLT1A LTR MaLR -153 212 18 6 954 28 79 0 0 chr12 48478949 48479012 -72778518 + AT_rich Low_complexity Low_complexity 1 63 0 6 954 322 143 107 132 chr12 48479508 48479629 -72777901 - Lx2B LINE L1 0 6997 6880 6 954 597 92 11 11 chr12 48479630 48479718 -72777812 + ORR1A2 LTR MaLR 239 326 0 6 954 9263 169 83 10 chr12 48479719 48479973 -72777557 + ORR1A2-int LTR MaLR 2 258 -1705 6 954 3211 44 3 0 chr12 48479973 48480357 -72777173 - IAPEY_LTR LTR ERVK 0 385 1 6 954 9263 169 83 10 chr12 48480357 48481931 -72775599 + ORR1A2-int LTR MaLR 259 1962 -1 6 954 1960 140 32 3 chr12 48481936 48482252 -72775278 + ORR1A2 LTR MaLR 3 327 0 6 954 3632 160 7 2 chr12 48482253 48482840 -72774690 - Lx2B LINE L1 -119 6881 6292 6 954 882 129 0 7 chr12 48482838 48482978 -72774552 + Lx2A1 LINE L1 5677 5815 -1193 6 954 935 93 62 0 chr12 48483035 48483164 -72774366 + B1_Mus1 SINE Alu 1 137 -11 6 954 428 35 17 0 chr12 48483164 48483222 -72774308 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 954 342 319 53 81 chr12 48483806 48484052 -72773478 + MLT2C1 LTR ERVL 103 341 -56 6 954 290 290 45 6 chr12 48484078 48484234 -72773296 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 6 954 4410 12 2 0 chr12 48484999 48485491 -72772039 - MT2_Mm LTR ERVL 0 493 1 6 954 314 0 0 0 chr12 48485491 48485529 -72772001 - MERVL-int LTR ERVL 0 5485 5448 6 954 392 167 46 35 chr12 48485529 48485616 -72771914 - ORR1A3-int LTR MaLR -1323 640 553 6 954 47378 15 6 0 chr12 48485616 48490942 -72766588 - MERVL-int LTR ERVL -125 5360 1 6 954 4410 12 2 0 chr12 48490942 48491434 -72766096 - MT2_Mm LTR ERVL 0 493 1 6 954 720 71 0 0 chr12 48491723 48491822 -72765708 + (TCC)n Simple_repeat Simple_repeat 2 100 0 6 954 257 333 17 34 chr12 48492431 48492549 -72764981 + RMER15 LTR ERVL 45 160 -415 6 954 291 376 54 44 chr12 48492543 48492838 -72764692 + RMER15 LTR ERVL 273 570 -5 6 954 557 359 31 16 chr12 48492877 48493194 -72764336 + MLT1A0 LTR MaLR 19 340 -25 6 954 22 0 0 0 chr12 48493524 48493546 -72763984 + AT_rich Low_complexity Low_complexity 1 22 0 6 954 197 371 92 25 chr12 48496010 48496173 -72761357 + MIRb SINE MIR 35 208 -60 6 119 1761 132 0 36 chr12 48496615 48496922 -72760608 - Lx2 LINE L1 0 6997 6702 6 955 2295 145 6 0 chr12 48496922 48497280 -72760250 + Lx2 LINE L1 6367 6726 -271 6 955 182 194 0 77 chr12 48497417 48497456 -72760074 - L3 LINE CR1 -1466 3023 2988 6 955 404 288 63 32 chr12 48497771 48497929 -72759601 - MLT1D LTR MaLR -2 503 341 6 955 843 214 0 0 chr12 48497955 48498320 -72759210 + (TA)n Simple_repeat Simple_repeat 1 365 0 6 955 719 214 0 9 chr12 48498313 48498546 -72758984 + (TATG)n Simple_repeat Simple_repeat 1 230 0 6 955 21 0 0 0 chr12 48499182 48499203 -72758327 + AT_rich Low_complexity Low_complexity 1 21 0 6 955 405 0 0 0 chr12 48499280 48499325 -72758205 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 955 309 260 20 40 chr12 48500012 48500112 -72757418 + RMER15 LTR ERVL 431 528 -47 1 955 363 23 0 0 chr12 48500126 48500170 -72757360 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 955 547 79 11 22 chr12 48500175 48500266 -72757264 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 3 955 191 412 10 19 chr12 48502892 48502996 -72754534 - MIR3 SINE MIR -48 160 58 4 955 375 23 0 0 chr12 48503960 48504004 -72753526 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 955 258 32 0 0 chr12 48504004 48504034 -72753496 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 955 24 32 0 0 chr12 48504486 48504517 -72753013 + AT_rich Low_complexity Low_complexity 1 31 0 7 955 3952 80 6 4 chr12 48504632 48505160 -72752370 - L1_Mus3 LINE L1 -2 6636 6108 8 955 1546 258 22 6 chr12 48505400 48505724 -72751806 + Lx5 LINE L1 6668 6996 -54 9 955 180 286 0 20 chr12 48506017 48506067 -72751463 + L2 LINE L2 2794 2842 -577 1 955 1411 266 40 64 chr12 48506339 48506885 -72750645 + MT2A LTR ERVL 1 533 0 1 955 22 35 0 0 chr12 48506940 48506969 -72750561 + AT_rich Low_complexity Low_complexity 1 29 0 1 955 1042 289 36 114 chr12 48508759 48509116 -72748414 + RMER5 LTR ERV1 1 313 -221 1 955 1669 182 22 77 chr12 48509116 48509521 -72748009 - ORR1C2 LTR MaLR 0 384 2 1 955 1042 289 36 114 chr12 48509521 48509722 -72747808 + RMER5 LTR ERV1 314 515 -19 1 955 25 0 0 0 chr12 48510386 48510411 -72747119 + AT_rich Low_complexity Low_complexity 1 25 0 1 955 39 0 0 0 chr12 48510466 48510505 -72747025 + AT_rich Low_complexity Low_complexity 1 39 0 1 955 906 285 113 0 chr12 48510561 48510845 -72746685 + Lx6 LINE L1 6817 7132 -328 1 955 1143 119 0 0 chr12 48510852 48511028 -72746502 + (TCTCC)n Simple_repeat Simple_repeat 5 180 0 1 955 780 19 18 27 chr12 48511028 48511133 -72746397 + (TTTC)n Simple_repeat Simple_repeat 3 107 0 1 955 21 0 0 0 chr12 48511221 48511242 -72746288 + AT_rich Low_complexity Low_complexity 1 21 0 2 955 287 339 62 103 chr12 48511501 48511744 -72745786 + MLT1L LTR MaLR 197 429 -181 2 955 1323 174 4 7 chr12 48511926 48512198 -72745332 - Lx LINE L1 -6 6648 6378 2 955 472 312 122 31 chr12 48512198 48512420 -72745110 + Lx6 LINE L1 7149 7390 -70 1 955 26 0 0 0 chr12 48512899 48512925 -72744605 + AT_rich Low_complexity Low_complexity 1 26 0 2 955 408 312 39 15 chr12 48513809 48513939 -72743591 - B1F SINE Alu -3 146 14 2 955 255 246 137 25 chr12 48514328 48514421 -72743109 + MLT1A LTR MaLR 5 94 -314 2 955 21 57 0 0 chr12 48514631 48514666 -72742864 + AT_rich Low_complexity Low_complexity 1 35 0 2 955 3265 241 38 54 chr12 48514718 48515610 -72741920 + RMER13B LTR ERVK 31 908 0 2 955 24 32 0 0 chr12 48516636 48516667 -72740863 + AT_rich Low_complexity Low_complexity 1 31 0 2 955 861 276 20 0 chr12 48517249 48517546 -72739984 - L1_Mur3 LINE L1 -6529 1183 881 2 955 1283 291 72 31 chr12 48517714 48518709 -72738821 - Lx7 LINE L1 -875 6585 5522 3 955 1647 124 82 16 chr12 48518724 48519028 -72738502 - IAPLTR4 LTR ERVK -21 324 1 3 955 660 285 15 7 chr12 48519028 48519300 -72738230 - Lx7 LINE L1 -351 5529 5256 3 955 252 0 0 0 chr12 48519431 48519459 -72738071 + (T)n Simple_repeat Simple_repeat 1 28 0 3 955 25 51 0 0 chr12 48520007 48520046 -72737484 + AT_rich Low_complexity Low_complexity 1 39 0 3 955 315 0 0 0 chr12 48521392 48521427 -72736103 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 955 25 0 0 0 chr12 48522248 48522273 -72735257 + AT_rich Low_complexity Low_complexity 1 25 0 3 955 271 341 72 39 chr12 48522517 48522822 -72734708 - L1M2 LINE L1 -631 5681 5367 3 955 234 191 0 0 chr12 48522837 48522884 -72734646 + T-rich Low_complexity Low_complexity 1 47 0 3 955 274 327 84 38 chr12 48523867 48524080 -72733450 + LTR16E1 LTR ERVL 311 533 -5 3 955 268 358 74 0 chr12 48524181 48524276 -72733254 - PB1D10 SINE Alu -7 110 9 3 955 245 351 0 0 chr12 48524211 48524288 -72733242 - ID_B1 SINE B4 -70 154 78 4 955 37 62 0 0 chr12 48524699 48524764 -72732766 + AT_rich Low_complexity Low_complexity 1 65 0 4 955 684 309 38 25 chr12 48524912 48525151 -72732379 + B4A SINE B4 7 248 -44 4 955 925 122 6 6 chr12 48525163 48525320 -72732210 + (TTC)n Simple_repeat Simple_repeat 1 157 0 4 955 1756 197 24 0 chr12 48525353 48525693 -72731837 - Lx4A LINE L1 -2 7056 6709 4 955 190 268 125 14 chr12 48526061 48526133 -72731397 + L3 LINE CR1 990 1069 -3420 4 955 13951 182 92 33 chr12 48527323 48528985 -72728545 + Lx LINE L1 2332 3855 -2031 4 955 239 0 0 31 chr12 48528985 48529017 -72728513 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 955 13951 178 72 10 chr12 48529017 48531719 -72725811 + Lx LINE L1 3856 6654 0 4 955 4765 232 70 131 chr12 48532484 48534458 -72723072 + L1_Mur3 LINE L1 594 2352 -3528 4 955 4602 119 31 31 chr12 48534458 48535209 -72722321 + Lx LINE L1 5904 6654 0 4 955 4765 224 80 164 chr12 48535209 48535322 -72722208 + L1_Mur3 LINE L1 2353 2420 -3460 4 955 180 0 0 0 chr12 48535322 48535342 -72722188 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 955 2963 53 11 3 chr12 48535344 48535721 -72721809 - L1Md_F2 LINE L1 -19 6563 6184 5 955 4765 224 80 164 chr12 48535721 48537167 -72720363 + L1_Mur3 LINE L1 2421 3886 -1994 4 955 1008 90 8 0 chr12 48537180 48537314 -72720216 - Lx2 LINE L1 -388 6609 6475 5 955 1426 133 35 4 chr12 48537311 48537537 -72719993 + Lx2 LINE L1 6617 6849 -148 5 955 1937 182 99 9 chr12 48537623 48538066 -72719464 - Lx LINE L1 -8 6646 6164 5 955 1674 228 158 90 chr12 48538038 48538511 -72719019 + Lx7 LINE L1 6800 7354 -342 5 955 411 21 0 0 chr12 48538511 48538559 -72718971 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 955 1674 234 143 88 chr12 48538559 48538754 -72718776 + Lx7 LINE L1 7106 7489 -207 5 955 389 19 38 0 chr12 48538755 48538808 -72718722 + (TTTTA)n Simple_repeat Simple_repeat 3 57 0 5 955 651 124 29 0 chr12 48538816 48538921 -72718609 - RLTR16 LTR ERVK -397 108 1 5 955 2865 63 5 0 chr12 48538921 48539352 -72718178 - L1Md_F2 LINE L1 0 6582 6202 5 955 23 54 0 0 chr12 48540106 48540143 -72717387 + AT_rich Low_complexity Low_complexity 1 37 0 5 955 23 86 0 0 chr12 48540193 48540251 -72717279 + AT_rich Low_complexity Low_complexity 1 58 0 6 955 718 314 71 63 chr12 48540708 48541058 -72716472 + ORR1E LTR MaLR 1 353 -6 6 955 273 29 0 0 chr12 48541735 48541769 -72715761 + (CAAT)n Simple_repeat Simple_repeat 4 37 0 6 955 201 94 0 0 chr12 48542602 48542634 -72714896 + (TA)n Simple_repeat Simple_repeat 1 32 0 6 955 1824 125 22 22 chr12 48542661 48542981 -72714549 + L1_Mur2 LINE L1 4153 4472 -1405 6 955 387 316 108 12 chr12 48544064 48544304 -72713226 + RMER15 LTR ERVL 272 534 -41 6 955 255 280 80 0 chr12 48544319 48544419 -72713111 - L1M2 LINE L1 -500 5791 5684 6 955 27 0 0 0 chr12 48544484 48544511 -72713019 + AT_rich Low_complexity Low_complexity 1 27 0 6 955 924 329 119 29 chr12 48544530 48545150 -72712380 - Lx8 LINE L1 -1 7472 6797 6 955 1009 291 34 15 chr12 48545215 48545484 -72712046 - MTD LTR MaLR 0 419 146 6 955 337 269 73 9 chr12 48545501 48545610 -72711920 - Lx8 LINE L1 -948 6525 6410 6 955 338 261 198 0 chr12 48545611 48545722 -72711808 - MTD LTR MaLR -286 133 1 7 955 1026 323 23 68 chr12 48545727 48546212 -72711318 - Lx8 LINE L1 -753 6720 6258 7 955 1847 227 103 9 chr12 48546690 48547156 -72710374 - Lx2 LINE L1 -1 6996 6487 7 955 21056 183 21 54 chr12 48547170 48549159 -72708371 - MusHAL1 LINE L1 0 5886 3938 7 955 1077 110 0 0 chr12 48549159 48549305 -72708225 - B1_Mus1 SINE Alu -1 147 2 7 955 21056 168 23 44 chr12 48549305 48549366 -72708164 - MusHAL1 LINE L1 -1949 3937 3878 7 955 326 202 89 0 chr12 48549366 48549445 -72708085 - 4.5SRNA scRNA scRNA -8 86 1 7 955 21056 168 23 44 chr12 48549445 48552623 -72704907 - MusHAL1 LINE L1 -1949 3877 727 7 955 975 252 17 20 chr12 48552650 48552950 -72704580 + L1VL1 LINE L1 1 299 -6123 7 955 462 213 0 0 chr12 48552941 48553035 -72704495 + L1Md_F LINE L1 235 328 -6191 7 955 23512 38 2 0 chr12 48553067 48555976 -72701554 + L1_Mm LINE L1 1747 4660 -1223 7 955 293 0 27 0 chr12 48555977 48556014 -72701516 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 955 12851 30 1 1 chr12 48556035 48558243 -72699287 - L1Md_A LINE L1 0 6582 4374 8 955 5096 65 15 0 chr12 48558243 48558910 -72698620 + L1Md_F3 LINE L1 5895 6571 -13 8 955 943 163 121 15 chr12 48558910 48559116 -72698414 - RLTR14 LTR ERV1 -148 234 7 8 955 307 61 0 20 chr12 48559281 48559331 -72698199 + L1Md_F2 LINE L1 6522 6570 -12 8 955 209 204 0 0 chr12 48559476 48559525 -72698005 + A-rich Low_complexity Low_complexity 1 49 0 8 955 474 98 0 0 chr12 48560514 48560596 -72696934 + (TA)n Simple_repeat Simple_repeat 1 82 0 8 955 398 275 106 8 chr12 48561257 48561389 -72696141 - MER20 DNA MER1_type -67 152 8 8 955 670 177 0 0 chr12 48563029 48563142 -72694388 + RLTR14 LTR ERV1 3 115 -267 8 955 308 219 211 32 chr12 48563140 48563263 -72694267 + RLTR14 LTR ERV1 236 380 -2 8 955 241 308 23 93 chr12 48563765 48563851 -72693679 - ID4_ SINE ID -2 81 2 8 955 533 357 26 9 chr12 48563876 48564105 -72693425 + Lx8 LINE L1 7077 7309 -164 8 955 351 0 0 0 chr12 48564579 48564618 -72692912 + (CATA)n Simple_repeat Simple_repeat 2 40 0 9 955 992 118 0 0 chr12 48565206 48565350 -72692180 + B1_Mus2 SINE Alu 1 144 -3 9 955 348 24 0 0 chr12 48565350 48565391 -72692139 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 9 955 3557 124 40 3 chr12 48568812 48569392 -72688138 - Lx LINE L1 -2 6652 6052 9 955 210 414 0 0 chr12 48570216 48570274 -72687256 - RSINE1 SINE B4 -106 59 2 9 955 248 154 0 19 chr12 48570837 48570890 -72686640 + (CATA)n Simple_repeat Simple_repeat 2 53 0 9 955 571 379 56 13 chr12 48570904 48571278 -72686252 + MLT1J-int LTR MaLR 110 499 -888 9 955 621 96 14 0 chr12 48571352 48571452 -72686078 + L1_Mur1 LINE L1 5402 5529 -357 9 955 3224 247 99 29 chr12 48571638 48572620 -72684910 + L1_Mur3 LINE L1 56 1106 -6622 9 955 1037 194 87 4 chr12 48572617 48572881 -72684649 + L1_Mur3 LINE L1 1311 1596 -4284 9 955 4117 153 24 27 chr12 48572884 48574193 -72683337 - L1VL4 LINE L1 -1992 1567 266 9 955 4104 184 49 23 chr12 48574196 48574422 -72683108 + Lx2B LINE L1 6158 6387 -613 1 955 417 15 45 15 chr12 48574422 48574488 -72683042 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 1 955 4104 184 49 23 chr12 48574488 48575080 -72682450 + Lx2B LINE L1 6388 6997 -3 1 955 1562 171 92 0 chr12 48575100 48575446 -72682084 + L1_Mur3 LINE L1 1580 1957 -3923 9 955 3186 206 75 8 chr12 48575450 48576245 -72681285 + L1_Mur3 LINE L1 3859 4707 -1173 9 955 362 271 65 16 chr12 48576322 48576506 -72681024 + Lx7 LINE L1 7356 7548 -148 1 955 298 360 35 47 chr12 48576687 48576859 -72680671 - B4A SINE B4 -120 172 3 1 955 21 89 0 0 chr12 48576875 48576931 -72680599 + AT_rich Low_complexity Low_complexity 1 56 0 1 955 288 328 43 8 chr12 48577630 48577747 -72679783 - B1F2 SINE Alu -5 144 24 1 955 405 0 0 0 chr12 48577747 48577792 -72679738 + (A)n Simple_repeat Simple_repeat 1 45 0 1 955 27 87 0 0 chr12 48577982 48578051 -72679479 + AT_rich Low_complexity Low_complexity 1 69 0 1 955 296 257 119 57 chr12 48578087 48578281 -72679249 + MamRep434 DNA TcMar 98 303 -123 1 955 318 325 22 60 chr12 48578856 48578990 -72678540 + RSINE1 SINE B4 36 164 -1 1 955 290 292 33 11 chr12 48579488 48579578 -72677952 - B1F1 SINE Alu -35 114 23 1 955 219 36 0 0 chr12 48579645 48579673 -72677857 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 955 375 23 0 0 chr12 48579673 48579717 -72677813 + (TGG)n Simple_repeat Simple_repeat 1 44 0 1 955 26 64 0 0 chr12 48580689 48580736 -72676794 + AT_rich Low_complexity Low_complexity 1 47 0 1 955 21 57 0 0 chr12 48581398 48581433 -72676097 + AT_rich Low_complexity Low_complexity 1 35 0 1 955 297 109 0 0 chr12 48581918 48581973 -72675557 + (A)n Simple_repeat Simple_repeat 1 55 0 1 955 297 0 0 0 chr12 48581984 48582017 -72675513 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 1 955 203 241 0 0 chr12 48582162 48582216 -72675314 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 955 3684 106 35 0 chr12 48582428 48582974 -72674556 + L1_Mus3 LINE L1 6074 6638 0 1 955 604 229 80 52 chr12 48583288 48583537 -72673993 - Lx7 LINE L1 -7 7689 7434 1 955 236 175 17 34 chr12 48583538 48583597 -72673933 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 1 955 1045 118 6 0 chr12 48583840 48584001 -72673529 + L1_Mm LINE L1 5035 5196 -687 1 955 207 0 0 0 chr12 48584251 48584274 -72673256 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 1 955 3096 240 51 20 chr12 48584309 48585100 -72672430 - Lx7 LINE L1 -355 7341 6527 1 955 777 332 43 24 chr12 48585629 48586000 -72671530 - MTE2b LTR MaLR -1 378 1 1 955 186 43 0 0 chr12 48587669 48587692 -72669838 + (TAA)n Simple_repeat Simple_repeat 3 25 0 1 955 348 314 46 36 chr12 48587923 48587961 -72669569 + L1M5 LINE L1 3410 3446 -2700 1 955 999 86 0 0 chr12 48587961 48588100 -72669430 + B1_Mus1 SINE Alu 1 139 -9 1 955 279 0 0 0 chr12 48588100 48588131 -72669399 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 955 348 314 46 36 chr12 48588131 48588286 -72669244 + L1M5 LINE L1 3447 3605 -2541 1 955 216 372 58 45 chr12 48588620 48588775 -72668755 + RSINE1 SINE B4 3 159 -6 1 955 386 94 0 15 chr12 48588783 48588848 -72668682 + (TAA)n Simple_repeat Simple_repeat 3 66 0 1 955 4469 69 9 0 chr12 48589144 48589725 -72667805 + L1_Mus1 LINE L1 5981 6566 -1 1 955 5205 106 13 10 chr12 48590627 48591407 -72666123 - L1_Mus4 LINE L1 -4 6632 5851 1 955 23 33 0 0 chr12 48591996 48592026 -72665504 + AT_rich Low_complexity Low_complexity 1 30 0 1 955 1690 82 69 19 chr12 48592138 48592400 -72665130 - L1Md_F2 LINE L1 -12 6570 6296 1 955 291 204 0 51 chr12 48592666 48592764 -72664766 - Lx3A LINE L1 0 6981 6889 1 955 3920 126 43 48 chr12 48592764 48593479 -72664051 - Lx3_Mus LINE L1 -441 6568 5857 1 955 6679 137 10 54 chr12 48593474 48594500 -72663030 - L1_Mur1 LINE L1 -475 5411 4424 1 955 802 78 0 17 chr12 48594500 48594618 -72662912 - B1_Mm SINE Alu -2 145 30 1 955 6679 137 10 54 chr12 48594618 48595054 -72662476 - L1_Mur1 LINE L1 -475 4423 4002 1 955 1599 154 0 7 chr12 48595058 48595333 -72662197 + L1_Mus4 LINE L1 6359 6631 -5 1 955 2330 81 0 0 chr12 48595387 48595709 -72661821 + L1_Mur1 LINE L1 3703 4024 -1862 1 955 462 18 0 0 chr12 48596493 48596548 -72660982 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 955 537 16 0 0 chr12 48596548 48596609 -72660921 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 955 656 360 43 59 chr12 48597200 48597592 -72659938 - Lx8 LINE L1 -200 7273 6888 1 955 1044 310 53 48 chr12 48597616 48597992 -72659538 - MTD LTR MaLR -5 414 37 1 955 251 347 52 26 chr12 48598347 48598501 -72659029 - Lx8 LINE L1 -1090 6383 6226 1 955 21 36 0 0 chr12 48598525 48598553 -72658977 + AT_rich Low_complexity Low_complexity 1 28 0 1 955 891 298 109 29 chr12 48598840 48599352 -72658178 - Lx8 LINE L1 -14 5866 5320 1 955 851 99 15 0 chr12 48599352 48599483 -72658047 + (TTTC)n Simple_repeat Simple_repeat 2 134 0 1 955 891 334 110 28 chr12 48599483 48600049 -72657481 - Lx8 LINE L1 -561 5319 4673 1 955 1881 51 0 0 chr12 48600433 48600669 -72656861 - L1Md_T LINE L1 0 6582 6347 1 955 885 298 45 29 chr12 48600669 48601160 -72656370 - Lx8 LINE L1 -1340 4540 4042 1 955 376 35 35 0 chr12 48601160 48601217 -72656313 - L1_Mus2 LINE L1 0 6566 6508 1 955 501 17 0 0 chr12 48601217 48601275 -72656255 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 955 227 258 52 31 chr12 48601294 48601390 -72656140 - Lx8 LINE L1 -3659 2221 2124 1 955 551 329 28 42 chr12 48601658 48601874 -72655656 + B3A SINE B2 1 213 -3 1 955 640 0 25 0 chr12 48602723 48602803 -72654727 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 1 955 338 181 0 24 chr12 48603353 48603438 -72654092 - Lx7 LINE L1 -4 7692 7610 1 955 464 0 18 0 chr12 48603753 48603809 -72653721 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 955 555 157 0 0 chr12 48604105 48604213 -72653317 + CT-rich Low_complexity Low_complexity 1 108 0 1 955 270 81 0 0 chr12 48604250 48604287 -72653243 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 1 955 2771 96 12 14 chr12 48604754 48605176 -72652354 - BGLII LTR ERVK 0 421 1 1 955 185 279 14 68 chr12 48605278 48605351 -72652179 - MIRb SINE MIR -11 257 189 1 955 614 90 0 74 chr12 48605372 48605480 -72652050 - RMER6B LTR ERVK 0 461 362 1 955 317 22 0 43 chr12 48605481 48605528 -72652002 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 1 955 327 269 35 69 chr12 48605529 48605645 -72651885 - RMER6B LTR ERVK -95 366 255 1 955 200 360 13 13 chr12 48605715 48605791 -72651739 - MIR SINE MIR -136 126 51 1 955 30 0 0 0 chr12 48606941 48606971 -72650559 + AT_rich Low_complexity Low_complexity 1 30 0 1 955 232 260 0 20 chr12 48607728 48607779 -72649751 + MTEa LTR MaLR 278 327 -52 1 955 358 316 108 50 chr12 48607866 48608126 -72649404 - L1ME1 LINE L1 -27 6152 5878 1 955 375 121 0 0 chr12 48608126 48608184 -72649346 + (TCC)n Simple_repeat Simple_repeat 3 60 0 1 955 1840 181 45 3 chr12 48608190 48608544 -72648986 - RLTR17 LTR ERVK -323 369 1 1 955 2044 255 31 37 chr12 48608558 48609209 -72648321 - RMER3D-int LTR ERVK -36 2806 2160 1 955 14726 65 3 1 chr12 48609209 48611121 -72646409 + L1_Mm LINE L1 3947 5862 -21 1 955 3648 182 71 95 chr12 48611121 48611459 -72646071 - RMER3D-int LTR ERVK -711 2131 1769 1 955 3949 46 0 0 chr12 48611459 48611940 -72645590 + L1Md_T LINE L1 6102 6582 0 1 955 3732 184 83 93 chr12 48611940 48612722 -72644808 - RMER3D-int LTR ERVK -1074 1768 1022 1 955 472 126 119 112 chr12 48612759 48612893 -72644637 - RMER3D-int LTR ERVK -2238 604 470 1 955 1449 214 47 56 chr12 48612894 48613507 -72644023 - RMER3D-int LTR ERVK -1907 935 1 1 955 1836 195 73 6 chr12 48613507 48613863 -72643667 - RLTR17 LTR ERVK 0 692 313 1 955 463 336 56 44 chr12 48613895 48614234 -72643296 - L1MD3 LINE L1 -2107 5888 5546 1 955 365 145 0 13 chr12 48614373 48614450 -72643080 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 955 259 365 53 18 chr12 48614536 48614706 -72642824 - B4 SINE B4 -116 176 1 1 955 257 277 15 23 chr12 48614901 48615034 -72642496 - L1MD3 LINE L1 -921 5225 5094 1 955 302 290 260 5 chr12 48615538 48615746 -72641784 - L1MD LINE L1 -1616 4530 4270 1 955 333 0 0 0 chr12 48615980 48616017 -72641513 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 955 615 14 0 0 chr12 48616582 48616654 -72640876 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 1 955 7098 136 33 14 chr12 48616656 48617869 -72639661 - Lx3A LINE L1 0 6981 5746 1 955 4857 108 14 54 chr12 48617869 48618683 -72638847 - Lx3A LINE L1 -231 5655 4875 1 955 666 356 98 25 chr12 48619300 48619778 -72637752 + MLT2B1 LTR ERVL 1 513 -7 1 955 32910 90 6 14 chr12 48621081 48627019 -72630511 - L1Md_F2 LINE L1 0 6582 664 1 955 4374 16 2 0 chr12 48627019 48627511 -72630019 + MT2_Mm LTR ERVL 1 493 0 1 119 40486 16 14 0 chr12 48627521 48632797 -72624733 + MERVL-int LTR ERVL 11 5360 -125 1 956 392 167 46 35 chr12 48632797 48632884 -72624646 + ORR1A3-int LTR MaLR 553 640 -1323 1 956 314 0 0 0 chr12 48632884 48632922 -72624608 + MERVL-int LTR ERVL 5448 5485 0 1 956 4374 16 2 0 chr12 48632922 48633414 -72624116 + MT2_Mm LTR ERVL 1 493 0 1 956 1367 161 85 0 chr12 48633418 48633654 -72623876 - L1Md_F2 LINE L1 -5974 642 387 1 956 296 246 47 14 chr12 48634281 48634429 -72623101 + Lx9 LINE L1 7492 7644 0 1 956 22 0 0 0 chr12 48634665 48634687 -72622843 + AT_rich Low_complexity Low_complexity 1 22 0 1 956 239 167 15 0 chr12 48634986 48635052 -72622478 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1 956 400 93 27 0 chr12 48635063 48635138 -72622392 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 956 1570 32 0 11 chr12 48635217 48635404 -72622126 - B2_Mm1t SINE B2 -7 186 2 1 956 551 268 43 99 chr12 48635670 48635902 -72621628 - URR1A DNA MER1_type 0 226 8 1 956 22 80 0 0 chr12 48636951 48637001 -72620529 + AT_rich Low_complexity Low_complexity 1 50 0 1 956 2820 103 5 7 chr12 48637621 48638041 -72619489 - Lx LINE L1 -1 6653 6235 1 956 33 43 0 0 chr12 48638311 48638358 -72619172 + AT_rich Low_complexity Low_complexity 1 47 0 1 956 539 313 86 9 chr12 48638421 48638653 -72618877 + Lx9 LINE L1 7110 7359 -285 1 956 4728 62 0 0 chr12 48638678 48639272 -72618258 - L1Md_F3 LINE L1 -29 5854 5261 1 956 5993 41 1 0 chr12 48639273 48639998 -72617532 + L1Md_F3 LINE L1 5856 6581 -3 1 956 1010 331 106 5 chr12 48640456 48641011 -72616519 + Lx8 LINE L1 6455 7065 -408 1 956 580 303 26 16 chr12 48641031 48641222 -72616308 + B3 SINE B2 24 216 0 1 956 21 82 0 0 chr12 48641958 48642007 -72615523 + AT_rich Low_complexity Low_complexity 1 49 0 1 956 227 56 56 0 chr12 48644261 48644297 -72613233 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 1 956 243 0 0 0 chr12 48644297 48644324 -72613206 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 956 21 89 0 0 chr12 48644399 48644455 -72613075 + AT_rich Low_complexity Low_complexity 1 56 0 1 956 520 252 0 9 chr12 48644623 48644739 -72612791 + B2_Mm2 SINE B2 1 115 -80 1 956 2953 248 31 8 chr12 48644787 48645557 -72611973 + Lx3C LINE L1 6199 6995 -5 1 956 22 35 0 0 chr12 48645569 48645598 -72611932 + AT_rich Low_complexity Low_complexity 1 29 0 1 956 471 289 25 8 chr12 48645755 48645877 -72611653 + B1_Mur1 SINE Alu 13 136 -13 2 956 237 65 0 0 chr12 48645879 48645910 -72611620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 956 272 109 26 0 chr12 48646018 48646072 -72611458 + Lx8 LINE L1 5715 5796 -504 2 956 514 273 0 8 chr12 48646083 48646216 -72611314 - Lx9 LINE L1 -703 6941 6810 2 956 446 284 183 5 chr12 48646253 48646444 -72611086 + Lx9 LINE L1 7066 7290 -354 2 956 414 39 0 0 chr12 48646592 48646644 -72610886 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 956 259 327 149 54 chr12 48647277 48647445 -72610085 + B4A SINE B4 107 290 -2 2 956 1978 174 18 15 chr12 48648308 48648699 -72608831 + Lx2A1 LINE L1 6611 7002 -6 2 956 431 248 33 66 chr12 48648798 48648949 -72608581 - B1_Mur1 SINE Alu -2 147 2 2 956 2406 213 57 46 chr12 48649137 48649223 -72608307 - RMER6C LTR ERVK -69 621 539 2 956 3342 37 2 0 chr12 48649223 48649626 -72607904 + L1Md_F2 LINE L1 6179 6582 0 2 956 2406 213 57 46 chr12 48649626 48649776 -72607754 - RMER6C LTR ERVK -152 538 370 2 956 375 73 0 0 chr12 48649776 48649831 -72607699 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 2 956 2406 213 57 46 chr12 48649831 48650207 -72607323 - RMER6C LTR ERVK -321 369 1 2 956 335 265 117 10 chr12 48650273 48650376 -72607154 - PB1D9 SINE Alu 0 120 7 2 956 552 68 0 0 chr12 48652501 48652574 -72604956 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 956 260 146 36 0 chr12 48652586 48652641 -72604889 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 2 956 5546 23 0 0 chr12 48654372 48655020 -72602510 + L1Md_F2 LINE L1 4939 5586 -297 2 956 7761 58 2 4 chr12 48655021 48656016 -72601514 + L1Md_F2 LINE L1 5588 6580 -2 2 956 416 335 82 0 chr12 48656031 48656225 -72601305 + B3 SINE B2 2 211 -5 2 956 396 171 207 0 chr12 48656944 48657055 -72600475 - Lx7 LINE L1 0 7696 7563 2 956 223 28 56 0 chr12 48657067 48657103 -72600427 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 956 654 256 70 29 chr12 48657124 48657365 -72600165 - Lx7 LINE L1 -214 7482 7232 2 956 404 269 11 0 chr12 48657368 48657461 -72600069 - B3A SINE B2 -104 94 1 2 956 297 0 0 0 chr12 48657659 48657692 -72599838 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 956 657 314 35 9 chr12 48657714 48657945 -72599585 - RMER15 LTR ERVL -43 532 296 2 956 288 0 0 0 chr12 48658135 48658167 -72599363 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 956 209 83 28 0 chr12 48658617 48658653 -72598877 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 956 189 0 0 0 chr12 48660067 48660088 -72597442 + (T)n Simple_repeat Simple_repeat 1 21 0 2 956 271 105 0 34 chr12 48660849 48660908 -72596622 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 956 22 56 0 0 chr12 48664340 48664376 -72593154 + AT_rich Low_complexity Low_complexity 1 36 0 2 956 2616 309 59 36 chr12 48664458 48665241 -72592289 + Lx8 LINE L1 6120 6931 -542 2 956 225 0 0 0 chr12 48665241 48665266 -72592264 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 956 2616 309 59 36 chr12 48665266 48665587 -72591943 + Lx8 LINE L1 6932 7249 -224 2 956 377 351 42 102 chr12 48667071 48667591 -72589939 - RMER5 LTR ERV1 -40 494 6 2 956 651 157 45 167 chr12 48667601 48667823 -72589707 - B2_Mm2 SINE B2 0 195 1 2 956 1994 264 43 36 chr12 48667823 48668383 -72589147 - RMER15 LTR ERVL -11 564 1 2 956 717 311 73 51 chr12 48668385 48668755 -72588775 - RMER5 LTR ERV1 -156 378 1 2 956 47 44 0 0 chr12 48669986 48670054 -72587476 + AT_rich Low_complexity Low_complexity 1 68 0 2 956 345 296 55 73 chr12 48670107 48670271 -72587259 + RSINE1 SINE B4 5 165 0 2 956 22 35 0 0 chr12 48670427 48670456 -72587074 + AT_rich Low_complexity Low_complexity 1 29 0 2 956 389 278 31 16 chr12 48671779 48671907 -72585623 + RMER10B LTR ERVL 269 398 0 2 956 234 374 0 90 chr12 48673410 48673427 -72584103 - B3A SINE B2 0 198 182 2 956 477 0 0 0 chr12 48673427 48673480 -72584050 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 956 234 374 0 90 chr12 48673480 48673562 -72583968 - B3A SINE B2 -17 181 109 2 956 3779 52 2 4 chr12 48673795 48674275 -72583255 - L1Md_F3 LINE L1 -2 6582 6104 2 956 3713 268 44 12 chr12 48675241 48676221 -72581309 - Lx7 LINE L1 -491 7205 6195 2 956 489 162 0 0 chr12 48676641 48676715 -72580815 + tRNA-Lys-AAG tRNA tRNA 3 76 0 2 956 1759 204 40 30 chr12 48676717 48677090 -72580440 - RLTR31_Mur LTR ERVK 0 553 177 2 956 22 0 0 0 chr12 48677325 48677347 -72580183 + AT_rich Low_complexity Low_complexity 1 22 0 2 956 249 57 0 0 chr12 48677979 48678014 -72579516 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 956 1088 65 0 14 chr12 48678014 48678147 -72579383 - B1_Mm SINE Alu -12 135 3 2 956 453 250 10 0 chr12 48678357 48678457 -72579073 + ORR1D1 LTR MaLR 1 101 -273 2 956 327 226 96 11 chr12 48678495 48678589 -72578941 + RLTR11A LTR ERVK 3 104 -424 2 956 270 250 0 0 chr12 48679120 48679176 -72578354 - RSINE1 SINE B4 -105 60 5 2 956 918 304 94 20 chr12 48679199 48679541 -72577989 + ORR1D1 LTR MaLR 8 374 0 2 956 755 130 0 20 chr12 48679759 48679908 -72577622 - RMER17B LTR ERVK -495 463 318 2 956 37941 30 0 0 chr12 48679908 48686637 -72570893 - L1Md_T LINE L1 0 6585 1 2 956 1123 152 11 0 chr12 48686688 48686879 -72570651 - B2_Mm2 SINE B2 -2 193 1 2 956 21 57 0 0 chr12 48687742 48687777 -72569753 + AT_rich Low_complexity Low_complexity 1 35 0 2 956 298 274 23 30 chr12 48687967 48688099 -72569431 + CT-rich Low_complexity Low_complexity 3 133 0 2 956 662 326 33 41 chr12 48688845 48689088 -72568442 - B4A SINE B4 -10 282 42 2 956 22 0 0 0 chr12 48689579 48689601 -72567929 + AT_rich Low_complexity Low_complexity 1 22 0 2 956 1100 64 0 41 chr12 48689605 48689752 -72567778 + B1_Mm SINE Alu 1 141 -6 2 956 225 83 0 0 chr12 48689754 48689790 -72567740 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2 956 204 40 0 0 chr12 48690478 48690503 -72567027 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 956 29 0 0 0 chr12 48690571 48690600 -72566930 + AT_rich Low_complexity Low_complexity 1 29 0 2 956 29 47 0 0 chr12 48690981 48691024 -72566506 + AT_rich Low_complexity Low_complexity 1 43 0 2 956 194 250 68 14 chr12 48691216 48691289 -72566241 + L4 LINE RTE 184 260 -1769 2 956 296 0 0 100 chr12 48691318 48691378 -72566152 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 956 634 331 27 27 chr12 48691662 48691848 -72565682 + B3 SINE B2 1 186 -30 2 956 396 0 0 0 chr12 48691848 48691892 -72565638 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 956 8243 125 19 30 chr12 48692290 48693654 -72563876 - Lx2 LINE L1 0 6997 5649 2 956 411 21 0 0 chr12 48693957 48694005 -72563525 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 956 22 0 0 0 chr12 48694432 48694454 -72563076 + AT_rich Low_complexity Low_complexity 1 22 0 2 956 228 111 0 0 chr12 48694550 48694586 -72562944 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 956 383 86 0 0 chr12 48695504 48695562 -72561968 - L1_Mus3 LINE L1 -12 6626 6569 2 956 646 45 0 11 chr12 48695564 48695654 -72561876 - L1_Mus4 LINE L1 -249 6387 6299 2 956 2652 130 0 0 chr12 48695662 48696077 -72561453 - MusHAL1 LINE L1 -971 1741 1327 2 956 1109 114 23 0 chr12 48696076 48696252 -72561278 - MusHAL1 LINE L1 -1948 764 585 2 956 1121 158 0 27 chr12 48696236 48696424 -72561106 - Lx LINE L1 -488 6166 5984 2 956 792 111 8 0 chr12 48696433 48696550 -72560980 - L1_Mm LINE L1 -1003 4880 4763 2 956 240 133 0 0 chr12 48696568 48696613 -72560917 - Lx LINE L1 -21 6633 6589 2 956 2381 66 40 51 chr12 48697516 48697866 -72559664 + L1_Mus2 LINE L1 6221 6566 0 2 956 255 204 0 0 chr12 48697897 48697951 -72559579 + A-rich Low_complexity Low_complexity 1 54 0 2 956 967 111 23 0 chr12 48697951 48698123 -72559407 + (CAAGA)n Simple_repeat Simple_repeat 2 177 0 2 956 183 42 0 0 chr12 48699045 48699069 -72558461 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 956 620 299 15 135 chr12 48699122 48699389 -72558141 - MTE2a LTR MaLR -144 235 1 2 956 570 103 0 0 chr12 48699505 48699592 -72557938 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 956 1173 55 0 7 chr12 48699737 48699885 -72557645 - B1_Mus1 SINE Alu 0 148 2 2 956 239 289 55 83 chr12 48700285 48700466 -72557064 + L3 LINE CR1 921 1096 -3393 2 956 1289 223 44 53 chr12 48700637 48700957 -72556573 - Lx7 LINE L1 -1753 5943 5632 2 956 769 167 0 58 chr12 48700957 48701129 -72556401 - L1Md_F2 LINE L1 -1 6581 6420 2 956 1289 199 80 50 chr12 48701129 48701213 -72556317 - Lx7 LINE L1 -2065 5631 5529 2 956 351 0 0 0 chr12 48701305 48701344 -72556186 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 956 185 83 0 27 chr12 48701560 48701597 -72555933 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 956 28 0 0 0 chr12 48702446 48702474 -72555056 + AT_rich Low_complexity Low_complexity 1 28 0 2 956 431 285 29 71 chr12 48702715 48702869 -72554661 + RSINE1 SINE B4 3 150 -15 2 956 473 0 18 0 chr12 48702869 48702926 -72554604 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 956 431 285 29 71 chr12 48702926 48702941 -72554589 + RSINE1 SINE B4 151 165 0 2 956 1065 52 8 0 chr12 48703117 48703251 -72554279 + B1_Mus1 SINE Alu 5 139 -9 2 956 303 28 0 0 chr12 48703251 48703287 -72554243 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 956 291 54 0 0 chr12 48703287 48703324 -72554206 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 956 317 259 51 63 chr12 48703878 48704036 -72553494 - RMER4B LTR ERVK -24 561 369 2 956 542 246 89 63 chr12 48704146 48704337 -72553193 - RMER4B LTR ERVK -344 241 46 2 956 461 258 59 13 chr12 48704417 48704570 -72552960 - MER5A1 DNA MER1_type -6 160 1 2 956 361 217 0 0 chr12 48705284 48705367 -72552163 + Lx6 LINE L1 6647 6729 -731 2 956 567 288 109 44 chr12 48705404 48705855 -72551675 - Ricksha DNA MuDR -1254 1992 1513 2 956 339 25 0 0 chr12 48705864 48705904 -72551626 + (TTGTG)n Simple_repeat Simple_repeat 4 43 0 2 956 1463 214 66 9 chr12 48706109 48706458 -72551072 + Lx3C LINE L1 6556 6924 -52 2 956 1039 92 0 0 chr12 48706471 48706612 -72550918 + B1_Mm SINE Alu 7 147 0 3 956 5532 264 75 20 chr12 48706681 48707299 -72550231 - Lx6 LINE L1 -14 7446 6774 3 956 351 0 0 0 chr12 48707299 48707338 -72550192 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 956 5992 244 60 18 chr12 48707338 48708939 -72548591 - Lx6 LINE L1 -687 6773 5108 3 956 216 0 0 0 chr12 48708939 48708963 -72548567 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 3 956 5992 222 43 16 chr12 48708963 48709727 -72547803 - Lx6 LINE L1 -773 5107 4325 3 956 33153 75 8 13 chr12 48709728 48715987 -72541543 - L1Md_F2 LINE L1 0 6582 384 3 956 3048 223 154 109 chr12 48716008 48716070 -72541460 - Lx6 LINE L1 -1550 4330 4269 3 956 585 0 0 0 chr12 48716070 48716135 -72541395 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 3 956 3048 223 154 109 chr12 48716135 48716313 -72541217 - Lx6 LINE L1 -1612 4268 4070 3 956 303 71 0 0 chr12 48716313 48716355 -72541175 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 956 3048 223 154 109 chr12 48716355 48717715 -72539815 - Lx6 LINE L1 -1811 4069 2656 3 956 387 0 0 0 chr12 48717716 48717759 -72539771 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 956 225 0 0 0 chr12 48718897 48718922 -72538608 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3 956 1203 158 85 0 chr12 48719820 48720067 -72537463 + RMER6-int LTR ERVK 2562 2829 -348 3 956 621 227 12 30 chr12 48720068 48720236 -72537294 + RMER6-int LTR ERVK 2979 3143 -34 3 956 3809 102 26 0 chr12 48720238 48720779 -72536751 - L1_Mus1 LINE L1 0 5883 5329 3 956 5035 85 19 6 chr12 48720779 48721468 -72536062 + L1_Mus1 LINE L1 5870 6567 0 3 956 480 343 0 57 chr12 48721515 48721725 -72535805 + B3A SINE B2 1 198 0 3 956 694 227 100 30 chr12 48721853 48722053 -72535477 + Lx8 LINE L1 6773 6986 -487 3 956 4461 33 0 20 chr12 48722091 48722646 -72534884 - L1Md_F2 LINE L1 -418 6164 5621 3 956 2865 62 0 5 chr12 48722646 48723022 -72534508 + L1Md_F2 LINE L1 6197 6570 -12 3 956 528 382 35 0 chr12 48723054 48723282 -72534248 + Lx8 LINE L1 7060 7295 -178 3 956 6115 118 12 15 chr12 48723398 48724347 -72533183 + L1_Mus3 LINE L1 5685 6630 -8 3 956 354 115 0 0 chr12 48724371 48724432 -72533098 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 956 1970 99 39 0 chr12 48724877 48725160 -72532370 + L1_Mus1 LINE L1 6274 6567 0 3 956 220 316 10 10 chr12 48725470 48725597 -72531933 + (TCTA)n Simple_repeat Simple_repeat 1 127 0 3 956 185 0 0 39 chr12 48726215 48726241 -72531289 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 956 573 339 25 34 chr12 48726268 48726592 -72530938 + Lx9 LINE L1 7110 7430 -214 3 956 21 71 0 0 chr12 48726614 48726656 -72530874 + AT_rich Low_complexity Low_complexity 1 42 0 3 956 427 369 32 53 chr12 48726763 48726819 -72530711 - Lx3B LINE L1 -230 6743 6697 3 956 429 20 0 0 chr12 48726819 48726869 -72530661 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 3 956 1354 45 11 0 chr12 48726869 48727047 -72530483 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 956 5313 93 8 0 chr12 48727047 48727778 -72529752 - L1_Mus2 LINE L1 -218 6348 5612 3 956 3119 244 43 26 chr12 48727884 48728887 -72528643 - Lx5 LINE L1 -114 6936 5852 3 956 475 335 15 61 chr12 48729622 48729653 -72527877 - B3 SINE B2 -24 192 164 3 956 489 76 0 0 chr12 48729653 48729719 -72527811 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 956 570 335 15 61 chr12 48729719 48729884 -72527646 - B3A SINE B2 -28 170 5 3 956 389 325 56 51 chr12 48729896 48730074 -72527456 - MTEa LTR MaLR -200 179 1 3 956 294 95 0 0 chr12 48730320 48730362 -72527168 + (T)n Simple_repeat Simple_repeat 1 42 0 3 956 203 279 88 0 chr12 48730772 48730840 -72526690 - MIRc SINE MIR -107 161 88 3 956 509 106 21 0 chr12 48730909 48731003 -72526527 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 3 956 192 77 0 0 chr12 48731015 48731041 -72526489 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 956 189 0 0 0 chr12 48731525 48731546 -72525984 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 956 4614 89 11 5 chr12 48731579 48732230 -72525300 + L1_Mus1 LINE L1 5912 6566 -1 3 956 1082 102 0 13 chr12 48732592 48732741 -72524789 + B1_Mus1 SINE Alu 2 148 0 3 956 360 0 0 0 chr12 48732759 48732799 -72524731 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 956 232 333 0 110 chr12 48733004 48733122 -72524408 - PB1 SINE Alu -12 115 11 3 956 531 319 64 16 chr12 48733300 48733488 -72524042 + ID_B1 SINE B4 22 218 -6 3 956 3372 99 6 2 chr12 48734240 48734725 -72522805 - Lx3_Mus LINE L1 0 7009 6523 3 956 363 157 0 0 chr12 48735450 48735520 -72522010 + T-rich Low_complexity Low_complexity 1 70 0 3 956 915 273 136 74 chr12 48736167 48736203 -72521327 + RMER4B LTR ERVK 16 40 -545 3 956 5592 169 35 18 chr12 48736203 48737302 -72520228 + Lx2 LINE L1 5879 6996 -1 3 956 915 273 136 74 chr12 48737302 48737779 -72519751 + RMER4B LTR ERVK 41 561 -24 3 956 232 275 31 142 chr12 48738236 48738363 -72519167 + B2_Mm2 SINE B2 10 122 -73 3 956 216 0 0 0 chr12 48738437 48738461 -72519069 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 956 279 203 0 0 chr12 48738461 48738535 -72518995 + GA-rich Low_complexity Low_complexity 1 74 0 3 956 1941 241 75 7 chr12 48738570 48739167 -72518363 + Lx9 LINE L1 7006 7643 -1 3 956 949 207 40 27 chr12 48739177 48739400 -72518130 + Lx4A LINE L1 6833 7058 0 3 956 2670 239 41 19 chr12 48740115 48740892 -72516638 - Lx9 LINE L1 -8 7636 6843 3 956 618 51 0 0 chr12 48742415 48742493 -72515037 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 956 286 284 0 69 chr12 48742493 48742556 -72514974 - B4 SINE B4 -26 266 208 3 956 2058 244 87 61 chr12 48742670 48743509 -72514021 - RLTR21 LTR ERVK 0 1572 712 3 956 286 271 44 22 chr12 48743514 48743650 -72513880 + Lx2B LINE L1 6839 6977 -23 3 956 1583 92 13 0 chr12 48743655 48743882 -72513648 - Lx LINE L1 -685 5969 5740 3 956 3070 169 31 39 chr12 48743882 48744551 -72512979 + Lx LINE L1 5978 6641 -13 3 956 31 58 0 0 chr12 48744551 48744603 -72512927 + AT_rich Low_complexity Low_complexity 1 52 0 3 956 3631 194 35 10 chr12 48744605 48745309 -72512221 - RLTR21 LTR ERVK -838 734 13 3 956 219 36 0 0 chr12 48746242 48746270 -72511260 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 956 6922 28 0 0 chr12 48747745 48748557 -72508973 + L1Md_F2 LINE L1 4775 5586 -297 3 956 7984 49 1 13 chr12 48748557 48749564 -72507966 + L1Md_F2 LINE L1 5587 6581 -1 3 956 1676 237 49 148 chr12 48749973 48750651 -72506879 - RMER19C LTR ERVK 0 611 1 3 956 293 266 25 12 chr12 48751381 48751461 -72506069 - Tigger7 DNA MER2_type -10 2481 2401 3 956 245 282 12 60 chr12 48751460 48751543 -72505987 - Tigger7 DNA MER2_type -1448 1043 965 3 956 286 105 0 0 chr12 48752582 48752620 -72504910 - U2 snRNA snRNA -150 38 1 3 956 2962 176 37 9 chr12 48753652 48754215 -72503315 + RMER6A LTR ERVK 3 581 -175 3 956 1978 239 65 17 chr12 48754216 48754570 -72502960 + Lx5 LINE L1 6548 6908 -142 3 956 495 0 0 0 chr12 48754570 48754625 -72502905 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 956 1978 239 65 17 chr12 48754625 48754747 -72502783 + Lx5 LINE L1 6909 7047 -3 3 956 811 202 5 75 chr12 48754752 48754939 -72502591 + RMER6A LTR ERVK 581 754 -2 3 956 184 306 113 61 chr12 48755625 48755740 -72501790 - MIR3 SINE MIR -78 130 10 3 956 191 192 55 0 chr12 48756383 48756456 -72501074 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 956 183 100 0 0 chr12 48756471 48756501 -72501029 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 957 357 350 0 0 chr12 48758838 48758941 -72498589 + RSINE1 SINE B4 4 106 -59 3 957 5155 151 29 18 chr12 48759314 48760226 -72497304 - Lx3C LINE L1 -403 6573 5652 3 957 8130 146 31 13 chr12 48760801 48762382 -72495148 - Lx2 LINE L1 -1 6996 5387 3 957 1534 64 15 0 chr12 48762403 48762628 -72494902 - L1Md_F2 LINE L1 0 6582 6359 3 957 2064 224 185 40 chr12 48762643 48763185 -72494345 + Lx3_Mus LINE L1 4803 5469 -408 3 957 321 47 0 0 chr12 48763185 48763228 -72494302 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 957 2064 224 185 40 chr12 48763228 48763462 -72494068 + Lx3_Mus LINE L1 5470 5714 -163 3 957 244 48 48 0 chr12 48763462 48763504 -72494026 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 3 957 4267 128 2 0 chr12 48763504 48764129 -72493401 - Lx3A LINE L1 -12 6969 6344 3 957 2064 129 34 96 chr12 48764129 48764516 -72493014 + Lx3_Mus LINE L1 5715 6084 -925 3 957 293 268 127 12 chr12 48764675 48764841 -72492689 + L1MA9 LINE L1 6010 6194 -97 3 957 314 337 23 35 chr12 48764874 48765046 -72492484 - Lx8 LINE L1 -1099 6374 6205 3 957 3191 53 5 8 chr12 48765047 48765444 -72492086 - MTA_Mm LTR MaLR 0 396 1 3 957 8819 49 5 2 chr12 48765444 48766536 -72490994 - MTA_Mm-int LTR MaLR 0 1098 4 3 957 3264 46 5 0 chr12 48766539 48766933 -72490597 - MTA_Mm LTR MaLR 0 396 1 3 957 799 345 93 42 chr12 48766970 48767464 -72490066 + Lx7 LINE L1 6385 6903 -793 3 957 267 342 33 25 chr12 48767634 48767754 -72489776 + Lx8 LINE L1 7120 7240 -233 3 957 23 54 0 0 chr12 48767957 48767994 -72489536 + AT_rich Low_complexity Low_complexity 1 37 0 3 957 807 248 22 18 chr12 48768193 48768415 -72489115 - URR1B DNA MER1_type 0 225 3 3 957 2988 214 108 46 chr12 48768495 48769285 -72488245 + RMER21B LTR ERV1 1 839 -3 3 957 928 218 121 4 chr12 48769324 48769573 -72487957 - RLTR15 LTR ERVK 0 359 82 3 957 186 43 0 0 chr12 48769655 48769678 -72487852 + (T)n Simple_repeat Simple_repeat 1 23 0 3 957 503 240 8 0 chr12 48769953 48770074 -72487456 + Lx6 LINE L1 7329 7450 -10 3 957 744 261 43 16 chr12 48770108 48770411 -72487119 - ORR1D1 LTR MaLR 0 374 1 3 957 307 324 10 10 chr12 48770776 48770879 -72486651 - MLT1A0 LTR MaLR -259 106 4 3 957 373 338 135 18 chr12 48770988 48771388 -72486142 + L1MC4 LINE L1 7130 7576 -466 3 957 268 316 21 85 chr12 48771486 48771721 -72485809 + L1MC4 LINE L1 7695 7914 -128 3 957 21 82 0 0 chr12 48772102 48772151 -72485379 + AT_rich Low_complexity Low_complexity 1 49 0 3 957 1032 311 77 31 chr12 48773052 48773692 -72483838 - Lx9 LINE L1 0 7644 6976 3 957 492 252 42 8 chr12 48773753 48773873 -72483657 + RSINE1 SINE B4 4 127 -38 3 957 315 113 0 0 chr12 48773892 48773945 -72483585 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 957 270 293 66 7 chr12 48773951 48774102 -72483428 + L1M4 LINE L1 3721 3880 -2266 3 957 316 318 33 22 chr12 48774276 48774366 -72483164 + PB1D10 SINE Alu 1 91 -26 3 957 481 292 7 44 chr12 48774287 48774423 -72483107 + ID_B1 SINE B4 93 223 -1 3 957 278 106 21 0 chr12 48774510 48774557 -72482973 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 957 301 335 39 15 chr12 48774618 48774821 -72482709 + L1M4 LINE L1 4233 4440 -1706 3 957 433 36 0 0 chr12 48774821 48774877 -72482653 - L1_Mm LINE L1 -3714 2169 2114 3 957 3172 74 2 0 chr12 48774898 48775315 -72482215 + L1Md_F2 LINE L1 5169 5586 -297 3 957 7201 82 14 1 chr12 48775315 48776298 -72481232 + L1Md_F2 LINE L1 5587 6582 0 3 957 485 338 0 62 chr12 48776336 48776547 -72480983 + B3A SINE B2 1 198 0 3 957 326 315 141 22 chr12 48776594 48776964 -72480566 + L1M4 LINE L1 4477 4890 -1256 3 957 248 279 99 35 chr12 48777394 48777588 -72479942 + L1M4 LINE L1 5512 5719 -459 3 957 2051 303 154 22 chr12 48778058 48779038 -72478492 - Lx9 LINE L1 -158 7486 6378 3 957 398 20 20 0 chr12 48779154 48779205 -72478325 + (TTATA)n Simple_repeat Simple_repeat 5 56 0 4 957 277 290 107 25 chr12 48779343 48779502 -72478028 - Lx9 LINE L1 -1617 6027 5856 3 957 283 233 105 0 chr12 48779539 48779625 -72477905 - Lx9 LINE L1 -103 5744 5650 3 957 231 36 0 0 chr12 48779625 48779653 -72477877 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 4 957 882 137 23 11 chr12 48779653 48779830 -72477700 + CT-rich Low_complexity Low_complexity 2 180 0 4 957 569 332 25 40 chr12 48780407 48780608 -72476922 + B3A SINE B2 1 198 0 4 957 21 0 0 0 chr12 48780873 48780894 -72476636 + AT_rich Low_complexity Low_complexity 1 21 0 4 957 777 207 40 29 chr12 48781616 48781763 -72475767 + B3 SINE B2 1 152 -64 4 957 366 121 0 0 chr12 48781763 48781829 -72475701 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 957 777 228 38 39 chr12 48781829 48781876 -72475654 + B3 SINE B2 141 191 -4 4 957 22 35 0 0 chr12 48782527 48782556 -72474974 + AT_rich Low_complexity Low_complexity 1 29 0 4 957 223 364 0 13 chr12 48783384 48783462 -72474068 + ID4_ SINE ID 1 77 -6 4 957 373 354 9 94 chr12 48783889 48783975 -72473555 + B3A SINE B2 5 76 -122 4 957 536 55 0 0 chr12 48783975 48784048 -72473482 - L1_Mus2 LINE L1 -1 6565 6493 4 957 373 354 9 94 chr12 48784048 48784173 -72473357 + B3A SINE B2 77 198 0 4 957 706 321 71 64 chr12 48784210 48784830 -72472700 + Lx8 LINE L1 6845 7407 -66 4 957 28 29 0 0 chr12 48784845 48784880 -72472650 + AT_rich Low_complexity Low_complexity 1 35 0 4 957 1900 168 6 15 chr12 48784972 48785298 -72472232 - ORR1C1 LTR MaLR -55 323 1 4 957 23 0 0 0 chr12 48785594 48785617 -72471913 + AT_rich Low_complexity Low_complexity 1 23 0 4 957 394 257 54 27 chr12 48785725 48785837 -72471693 + PB1D10 SINE Alu 3 117 0 4 957 351 230 14 0 chr12 48785979 48786053 -72471477 - PB1D10 SINE Alu 0 117 43 4 957 311 222 77 11 chr12 48786209 48786300 -72471230 - L1MCc LINE L1 -5108 2020 1924 4 957 363 381 83 72 chr12 48787016 48787164 -72470366 - L1MCc LINE L1 -5405 1018 858 4 957 2018 97 6 122 chr12 48787164 48787516 -72470014 + RLTR10E LTR ERVK 1 311 0 4 957 363 381 83 72 chr12 48787516 48787740 -72469790 - L1MCc LINE L1 -5566 857 642 4 957 279 0 0 0 chr12 48787962 48787993 -72469537 + (A)n Simple_repeat Simple_repeat 1 31 0 4 957 230 257 86 0 chr12 48788009 48788079 -72469451 + PB1D7 SINE Alu 30 105 -15 4 957 373 310 6 19 chr12 48788092 48788250 -72469280 - L1MCc LINE L1 -6172 251 96 4 957 1491 146 8 8 chr12 48788643 48788884 -72468646 - RLTR17 LTR ERVK -263 429 189 4 957 1879 208 29 5 chr12 48790147 48790524 -72467006 - ORR1B1 LTR MaLR -8 386 1 4 957 7283 209 42 95 chr12 48790524 48792500 -72465030 - ORR1B1-int LTR MaLR -41 1922 45 4 957 351 0 0 0 chr12 48792500 48792539 -72464991 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 957 7283 209 42 95 chr12 48792539 48792592 -72464938 - ORR1B1-int LTR MaLR -1919 44 1 4 957 1710 224 21 5 chr12 48792592 48792978 -72464552 - ORR1B1 LTR MaLR 0 394 3 4 957 22 35 0 0 chr12 48794993 48795022 -72462508 + AT_rich Low_complexity Low_complexity 1 29 0 4 957 573 55 0 0 chr12 48795340 48795413 -72462117 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 957 575 377 39 9 chr12 48795416 48795649 -72461881 - B4A SINE B4 -6 286 47 4 957 315 104 0 0 chr12 48795813 48795861 -72461669 + (A)n Simple_repeat Simple_repeat 1 48 0 4 957 2198 141 26 0 chr12 48796199 48796581 -72460949 + L1_Mur2 LINE L1 3822 4213 -1664 4 957 5987 146 16 17 chr12 48796558 48797598 -72459932 + Lx LINE L1 5616 6654 0 4 957 307 246 77 3 chr12 48797782 48797884 -72459646 + B1F1 SINE Alu 8 112 -5 4 957 1790 157 80 69 chr12 48800263 48800445 -72457085 - ORR1C2 LTR MaLR -2 382 173 4 957 558 0 0 0 chr12 48800445 48800507 -72457023 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 957 1790 169 77 63 chr12 48800507 48800719 -72456811 - ORR1C2 LTR MaLR -212 172 3 4 957 261 163 0 0 chr12 48802036 48802085 -72455445 + CT-rich Low_complexity Low_complexity 3 51 0 4 957 606 28 0 0 chr12 48802085 48802157 -72455373 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 957 414 0 0 0 chr12 48802158 48802204 -72455326 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 957 367 278 61 0 chr12 48802476 48802591 -72454939 - Lx7 LINE L1 -356 7340 7219 4 957 424 246 27 0 chr12 48802602 48802712 -72454818 - Lx7 LINE L1 -524 7172 7060 4 957 259 291 62 18 chr12 48802727 48802839 -72454691 - Lx7 LINE L1 -340 7356 7240 4 957 211 0 0 81 chr12 48802889 48802926 -72454604 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 4 957 1814 245 102 41 chr12 48802935 48803468 -72454062 - Lx6 LINE L1 -711 6749 6183 4 957 252 0 0 0 chr12 48803468 48803496 -72454034 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 957 4090 163 20 104 chr12 48803588 48804534 -72452996 - Lx3C LINE L1 -2 6974 6108 4 957 248 208 19 0 chr12 48804532 48804585 -72452945 + Lx3C LINE L1 6084 6137 -839 4 957 369 0 0 0 chr12 48804592 48804633 -72452897 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 957 437 304 27 9 chr12 48804633 48804855 -72452675 - Lx7 LINE L1 -1528 6168 5943 4 957 7688 219 72 125 chr12 48804881 48805870 -72451660 - Lx7 LINE L1 -34 5846 4692 4 957 315 0 0 0 chr12 48805870 48805905 -72451625 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 957 7688 219 72 125 chr12 48805905 48805958 -72451572 - Lx7 LINE L1 -1189 4691 4639 4 957 225 0 0 0 chr12 48805958 48805983 -72451547 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 957 7688 219 72 125 chr12 48805983 48806036 -72451494 - Lx7 LINE L1 -1242 4638 4622 4 957 261 0 0 0 chr12 48806036 48806065 -72451465 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 957 7688 219 72 125 chr12 48806065 48807957 -72449573 - Lx7 LINE L1 -1259 4621 3017 4 957 866 299 82 78 chr12 48808005 48808403 -72449127 + MTD-int LTR MaLR 735 1134 -124 4 957 532 325 34 10 chr12 48808403 48808608 -72448922 + B3 SINE B2 2 211 -5 4 957 866 299 82 78 chr12 48808608 48808731 -72448799 + MTD-int LTR MaLR 1135 1258 0 4 957 1012 288 62 77 chr12 48808733 48809150 -72448380 + MTD LTR MaLR 7 417 -2 4 957 1189 265 117 15 chr12 48810519 48810852 -72446678 + ORR1D2 LTR MaLR 1 367 -3 4 957 298 388 39 48 chr12 48811247 48811477 -72446053 + MLT1F2 LTR MaLR 324 551 -9 4 957 858 325 64 11 chr12 48812502 48812785 -72444745 + MTE2b LTR MaLR 82 379 0 4 957 661 325 39 12 chr12 48812785 48813118 -72444412 + L1M1 LINE L1 5445 5786 -517 4 957 1135 130 14 48 chr12 48813441 48813651 -72443879 - RMER4A LTR ERVK 0 466 264 4 957 1652 220 101 39 chr12 48813668 48814132 -72443398 + RMER1C Other Other 848 1340 -2 4 957 297 0 61 20 chr12 48814523 48814572 -72442958 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 4 957 32810 32 6 3 chr12 48816028 48820690 -72436840 - L1Md_T LINE L1 -35 6547 1874 4 957 1331 283 54 5 chr12 48820725 48821116 -72436414 + MTD LTR MaLR 1 410 -9 4 957 402 85 0 0 chr12 48822929 48822988 -72434542 + (TTGG)n Simple_repeat Simple_repeat 2 60 0 4 957 7113 79 16 2 chr12 48824018 48825267 -72432263 - L1Md_F2 LINE L1 -2 6580 5313 4 957 22 0 0 0 chr12 48828854 48828876 -72428654 + AT_rich Low_complexity Low_complexity 1 22 0 4 957 1096 82 0 7 chr12 48829785 48829924 -72427606 + B1_Mus2 SINE Alu 1 139 -8 4 957 746 31 21 0 chr12 48829924 48830020 -72427510 + (CAAAC)n Simple_repeat Simple_repeat 2 99 0 4 957 23 110 0 0 chr12 48831342 48831442 -72426088 + AT_rich Low_complexity Low_complexity 1 100 0 4 957 4269 108 14 0 chr12 48831448 48832099 -72425431 - MusHAL1 LINE L1 -627 2085 1426 4 957 424 141 0 0 chr12 48832550 48832614 -72424916 - 4.5SRNA scRNA scRNA -25 69 6 4 957 1247 110 0 0 chr12 48832614 48832796 -72424734 + L1_Mus2 LINE L1 6385 6566 0 4 957 1649 251 40 5 chr12 48833245 48833650 -72423880 + MTD LTR MaLR 1 419 0 4 957 2738 171 47 8 chr12 48833717 48834211 -72423319 - Lx LINE L1 -125 6529 6017 4 957 2729 116 7 0 chr12 48834211 48834616 -72422914 + Lx2 LINE L1 5594 6001 -996 4 957 204 179 0 0 chr12 48835552 48835591 -72421939 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 957 1195 302 101 54 chr12 48835595 48836285 -72421245 - Lx9 LINE L1 -127 7517 6795 4 957 3268 134 4 6 chr12 48836562 48837088 -72420442 + L1_Mus4 LINE L1 6105 6629 -7 4 957 609 141 0 16 chr12 48837652 48837775 -72419755 - L1_Mus4 LINE L1 -6 6630 6510 4 957 24 32 0 0 chr12 48837798 48837829 -72419701 + AT_rich Low_complexity Low_complexity 1 31 0 4 957 2439 166 7 17 chr12 48837854 48838319 -72419211 - Lx LINE L1 -6 6648 6189 4 957 3077 266 44 13 chr12 48838493 48839352 -72418178 + Lx7 LINE L1 6404 7289 -407 4 957 807 269 36 79 chr12 48839838 48840229 -72417301 + Lx7 LINE L1 7273 7646 -50 4 957 1658 84 9 0 chr12 48840236 48840462 -72417068 - L1_Mus1 LINE L1 -63 6504 6277 4 957 242 259 52 0 chr12 48840586 48840644 -72416886 + B3A SINE B2 60 120 -78 4 957 27 29 0 0 chr12 48840964 48840998 -72416532 + AT_rich Low_complexity Low_complexity 1 34 0 4 957 652 343 19 12 chr12 48841104 48841429 -72416101 + Lx9 LINE L1 7138 7464 -180 4 957 224 122 0 24 chr12 48842172 48842214 -72415316 + (TTCTCC)n Simple_repeat Simple_repeat 5 45 0 4 957 607 90 0 63 chr12 48842237 48842251 -72415279 - B1_Mus2 SINE Alu -1 146 138 4 957 240 35 0 0 chr12 48842251 48842280 -72415250 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 957 607 90 0 63 chr12 48842280 48842360 -72415170 - B1_Mus2 SINE Alu -10 137 58 4 957 504 0 0 0 chr12 48842745 48842801 -72414729 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 957 207 256 0 0 chr12 48845828 48845871 -72411659 + GA-rich Low_complexity Low_complexity 4 46 0 4 957 8005 137 14 2 chr12 48846401 48848529 -72409001 + L1VL4 LINE L1 26 2179 -1380 4 957 3271 167 24 0 chr12 48848543 48849182 -72408348 + L1_Mur2 LINE L1 3211 3864 -2013 4 957 4998 124 44 16 chr12 48849182 48849667 -72407863 + L1_Mus4 LINE L1 5795 6276 -360 4 957 4855 157 53 20 chr12 48849667 48850595 -72406935 + RMER17B LTR ERVK 1 958 0 4 957 4998 124 44 16 chr12 48850595 48850944 -72406586 + L1_Mus4 LINE L1 6277 6636 0 4 957 383 279 11 112 chr12 48850946 48851124 -72406406 + MLT1B LTR MaLR 62 221 -169 4 957 1616 135 48 11 chr12 48851184 48851453 -72406077 + Lx LINE L1 6376 6654 0 4 957 21 0 0 0 chr12 48851477 48851498 -72406032 + AT_rich Low_complexity Low_complexity 1 21 0 4 957 274 224 17 0 chr12 48851900 48851958 -72405572 + MLT1B LTR MaLR 357 415 -52 4 957 683 370 43 13 chr12 48851962 48852263 -72405267 - MTE2b LTR MaLR -62 317 8 4 957 401 294 74 29 chr12 48852269 48852444 -72405086 + ORR1D2 LTR MaLR 4 186 -184 4 957 1130 187 96 57 chr12 48852575 48852876 -72404654 + RLTR42-int LTR ERVK 3248 3560 -1962 4 957 671 208 76 5 chr12 48852995 48853179 -72404351 + RLTR42-int LTR ERVK 3593 3789 -1733 4 957 2404 100 87 29 chr12 48853953 48854366 -72403164 + RLTR9B LTR ERVK 1 437 0 4 957 699 322 19 123 chr12 48854838 48855203 -72402327 + MTE2a LTR MaLR 3 329 -50 4 957 204 67 0 0 chr12 48856751 48856781 -72400749 + (T)n Simple_repeat Simple_repeat 1 30 0 4 957 1612 21 16 0 chr12 48857006 48857195 -72400335 - B2_Mm1a SINE B2 0 193 2 4 957 548 361 73 6 chr12 48858042 48858382 -72399148 - L1MD3 LINE L1 -461 7534 7172 4 957 22 88 0 0 chr12 48859244 48859301 -72398229 + AT_rich Low_complexity Low_complexity 1 57 0 5 957 1709 233 261 8 chr12 48859589 48860076 -72397454 - Lx3C LINE L1 -2 6974 6365 5 957 6618 160 7 7 chr12 48860076 48861184 -72396346 - Lx3C LINE L1 -228 6748 5641 5 957 12331 183 26 10 chr12 48861181 48862585 -72394945 + Lx LINE L1 3342 4760 -1117 5 957 2322 138 125 17 chr12 48862585 48863065 -72394465 - RLTR47_MM LTR ERV1 0 532 1 5 957 12331 153 19 12 chr12 48863065 48864920 -72392610 + Lx LINE L1 4761 6641 -13 5 957 329 344 8 15 chr12 48865041 48865174 -72392356 + Lx8 LINE L1 6275 6406 -1067 5 957 1611 194 101 41 chr12 48865180 48865568 -72391962 + RMER20B LTR ERVK 4 414 -213 5 957 401 240 40 0 chr12 48865767 48865867 -72391663 + RMER20B LTR ERVK 445 548 -79 5 957 187 79 26 26 chr12 48866941 48866980 -72390550 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 957 494 359 84 39 chr12 48867148 48867531 -72389999 + RMER5 LTR ERV1 124 523 -11 5 957 27 0 0 0 chr12 48868322 48868349 -72389181 + AT_rich Low_complexity Low_complexity 1 27 0 5 957 1630 42 0 0 chr12 48869141 48869334 -72388196 + B2_Mm1t SINE B2 1 193 0 5 957 870 322 80 11 chr12 48869837 48870113 -72387417 - ORR1E LTR MaLR -60 299 5 5 957 221 320 0 0 chr12 48870178 48870256 -72387274 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 957 638 323 28 47 chr12 48870269 48870480 -72387050 - B4 SINE B4 -74 218 12 5 957 283 316 10 0 chr12 48870498 48870596 -72386934 - ORR1E-int LTR MaLR -74 1296 1198 5 957 278 235 91 10 chr12 48870645 48870744 -72386786 - MTE-int LTR MaLR -194 1386 1280 5 957 703 251 28 51 chr12 48870754 48870968 -72386562 - ORR1D1 LTR MaLR 0 374 166 5 957 573 119 0 0 chr12 48870977 48871078 -72386452 + (GA)n Simple_repeat Simple_repeat 2 102 0 5 957 595 251 31 109 chr12 48871080 48871272 -72386258 - ORR1D1 LTR MaLR -184 190 14 5 957 1070 346 27 24 chr12 48871296 48871712 -72385818 - ORR1D1-int LTR MaLR -271 1238 824 5 957 1493 237 87 70 chr12 48871697 48872370 -72385160 - RMER17B LTR ERVK -306 652 1 5 957 3342 196 2 2 chr12 48872448 48873073 -72384457 + Lx LINE L1 6030 6654 0 5 957 490 296 71 46 chr12 48873228 48873508 -72384022 + Lx8 LINE L1 7182 7468 -5 5 957 368 328 103 17 chr12 48873509 48873818 -72383712 + L1MEf LINE L1 993 1444 -5034 5 957 235 309 82 18 chr12 48873855 48874026 -72383504 + L1MEf LINE L1 1612 1793 -4591 5 957 693 155 21 33 chr12 48874503 48874836 -72382694 + GA-rich Low_complexity Low_complexity 1 329 0 5 957 1264 67 6 11 chr12 48874848 48875029 -72382501 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 957 320 275 108 24 chr12 48876352 48876639 -72380891 + L1MEf LINE L1 2967 3277 -3105 5 957 21 0 0 0 chr12 48876931 48876952 -72380578 + AT_rich Low_complexity Low_complexity 1 21 0 5 957 465 19 0 0 chr12 48877221 48877275 -72380255 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 957 1218 299 31 43 chr12 48877469 48877885 -72379645 + Lx9 LINE L1 6333 6743 -901 5 957 2674 176 77 98 chr12 48877885 48878163 -72379367 - RMER6C LTR ERVK 0 690 423 5 957 3506 69 0 4 chr12 48878163 48878617 -72378913 + L1_Mus1 LINE L1 6116 6567 0 5 957 2674 176 77 98 chr12 48878617 48879043 -72378487 - RMER6C LTR ERVK -268 422 1 5 957 1814 232 34 0 chr12 48879045 48879455 -72378075 + Lx9 LINE L1 6741 7164 -480 5 957 258 279 0 0 chr12 48879461 48879529 -72378001 - MT2B LTR ERVL -530 71 4 5 957 22 56 0 0 chr12 48880083 48880119 -72377411 + AT_rich Low_complexity Low_complexity 1 36 0 5 957 22 80 0 0 chr12 48880623 48880673 -72376857 + AT_rich Low_complexity Low_complexity 1 50 0 5 957 24 32 0 0 chr12 48881411 48881442 -72376088 + AT_rich Low_complexity Low_complexity 1 31 0 5 957 2224 234 27 66 chr12 48881501 48882091 -72375439 - RMER15 LTR ERVL 0 575 9 5 957 935 247 170 28 chr12 48882292 48882650 -72374880 + RMER19C LTR ERVK 203 611 0 5 957 1930 223 72 72 chr12 48882650 48883220 -72374310 + MurERV4_19-int LTR ERVK 1 570 -5210 5 957 273 137 0 0 chr12 48883220 48883271 -72374259 - L1_Mur2 LINE L1 -2624 3253 3203 5 957 706 161 69 11 chr12 48883250 48883437 -72374093 + L1_Mur2 LINE L1 4488 4679 -1207 5 957 189 0 0 0 chr12 48883456 48883477 -72374053 + (CCA)n Simple_repeat Simple_repeat 1 21 0 5 957 3801 159 5 1 chr12 48883517 48884190 -72373340 + L1_Mur2 LINE L1 4624 5298 -579 5 957 1142 192 31 0 chr12 48884200 48884393 -72373137 + L1VL4 LINE L1 266 464 -5838 5 957 261 123 40 14 chr12 48884396 48884470 -72373060 + (CAAA)n Simple_repeat Simple_repeat 2 77 0 5 957 7288 114 9 14 chr12 48884471 48886027 -72371503 + L1VL4 LINE L1 476 2017 -1542 5 957 5975 178 5 11 chr12 48886036 48887233 -72370297 + Lx LINE L1 5462 6651 -3 5 957 7008 175 61 19 chr12 48887241 48888968 -72368562 + Lx4A LINE L1 5261 7057 -1 5 119 5956 180 53 3 chr12 48889033 48890162 -72367368 + MurERV4_19-int LTR ERVK 1039 2224 -3556 5 958 2503 163 32 4 chr12 48890162 48890662 -72366868 - L1_Mm LINE L1 -1387 4496 3983 5 958 217 194 0 61 chr12 48890756 48890822 -72366708 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 5 958 311 256 143 13 chr12 48890823 48890977 -72366553 - L1M2 LINE L1 -525 5775 5602 5 958 22 0 0 0 chr12 48892389 48892411 -72365119 + AT_rich Low_complexity Low_complexity 1 22 0 5 958 211 71 48 0 chr12 48894168 48894210 -72363320 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 5 958 2121 42 0 4 chr12 48895021 48895283 -72362247 + L1_Mus1 LINE L1 6307 6567 0 5 958 995 115 0 20 chr12 48895412 48895563 -72361967 + B1_Mus1 SINE Alu 1 148 0 5 958 1031 104 13 0 chr12 48896209 48896363 -72361167 - MTB-int LTR MaLR -942 156 1 5 958 2713 104 13 8 chr12 48896363 48896761 -72360769 - MTB LTR MaLR 0 400 1 5 958 1211 157 39 0 chr12 48896762 48896991 -72360539 + Lx5 LINE L1 5657 5894 -1156 5 958 25 65 0 0 chr12 48897123 48897169 -72360361 + AT_rich Low_complexity Low_complexity 1 46 0 5 958 620 112 1 0 chr12 48899090 48899186 -72358344 + L1Md_F2 LINE L1 4681 4791 -1349 5 958 7661 63 3 7 chr12 48899203 48900189 -72357341 + L1Md_F2 LINE L1 5591 6572 -10 5 958 21 0 0 0 chr12 48900228 48900249 -72357281 + AT_rich Low_complexity Low_complexity 1 21 0 5 958 234 314 149 76 chr12 48900331 48900656 -72356874 + Lx8 LINE L1 6088 6436 -1037 5 958 656 333 28 0 chr12 48900728 48900905 -72356625 - B4A SINE B4 -106 186 5 5 958 38 0 0 0 chr12 48900960 48900998 -72356532 + AT_rich Low_complexity Low_complexity 1 38 0 5 958 786 178 22 0 chr12 48901098 48901233 -72356297 + B2_Mm1t SINE B2 2 139 -54 5 958 235 200 0 0 chr12 48902178 48902192 -72355338 - Lx3A LINE L1 0 6981 6968 5 958 333 0 0 0 chr12 48902192 48902229 -72355301 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 5 958 235 200 0 0 chr12 48902229 48902279 -72355251 - Lx3A LINE L1 -14 6967 6918 5 958 315 0 0 0 chr12 48902281 48902316 -72355214 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 5 958 8059 147 25 9 chr12 48902316 48903353 -72354177 - Lx3A LINE L1 -15 6966 5916 5 958 504 0 0 0 chr12 48903353 48903409 -72354121 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 958 9314 109 2 5 chr12 48903409 48904807 -72352723 - Lx3A LINE L1 -1066 5915 4517 5 958 572 325 5 9 chr12 48904825 48905036 -72352494 - B3 SINE B2 -5 211 2 5 958 621 235 0 15 chr12 48905087 48905221 -72352309 + B2_Mm2 SINE B2 3 134 -61 5 958 24 67 0 0 chr12 48905222 48905267 -72352263 + AT_rich Low_complexity Low_complexity 1 45 0 5 958 5403 141 19 6 chr12 48906989 48907854 -72349676 + Lx2A LINE L1 6101 6976 -32 5 958 329 149 15 15 chr12 48907847 48907915 -72349615 + Lx2A LINE L1 6923 6990 -18 5 958 525 154 0 0 chr12 48907916 48908007 -72349523 + GA-rich Low_complexity Low_complexity 2 92 0 5 958 1434 45 0 0 chr12 48908007 48908185 -72349345 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 958 315 0 0 0 chr12 48908264 48908299 -72349231 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 958 204 40 0 0 chr12 48908299 48908323 -72349207 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 958 2437 56 19 0 chr12 48908386 48908705 -72348825 - L1Md_F3 LINE L1 -14 6570 6246 5 958 189 0 0 0 chr12 48909646 48909667 -72347863 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 958 22 0 0 0 chr12 48909684 48909706 -72347824 + AT_rich Low_complexity Low_complexity 1 22 0 5 958 25 31 0 0 chr12 48909721 48909753 -72347777 + AT_rich Low_complexity Low_complexity 1 32 0 5 958 400 325 58 66 chr12 48909843 48910100 -72347430 - MT2A LTR ERVL -170 363 109 5 958 244 210 16 16 chr12 48910641 48910704 -72346826 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 958 1104 79 0 0 chr12 48911351 48911503 -72346027 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 5 958 657 282 31 26 chr12 48911504 48911730 -72345800 - Lx8 LINE L1 -578 6895 6669 5 958 318 104 0 0 chr12 48911728 48911776 -72345754 - Lx3_Mus LINE L1 -1132 5877 5830 5 958 6914 93 4 19 chr12 48911776 48912836 -72344694 - MusHAL1 LINE L1 -738 1974 931 5 958 3711 184 45 5 chr12 48912814 48913494 -72344036 - L1VL4 LINE L1 -5562 740 40 5 958 564 29 0 3 chr12 48914313 48914393 -72343137 + Lx6 LINE L1 5720 5801 -82 5 958 597 338 59 19 chr12 48914556 48914827 -72342703 - MTE2b LTR MaLR -21 358 77 5 958 529 320 88 30 chr12 48914828 48915223 -72342307 - MTE2a LTR MaLR -14 405 1 5 958 302 256 0 47 chr12 48915223 48915306 -72342224 - MTE2a LTR MaLR -300 79 1 5 958 1532 340 40 34 chr12 48915993 48916903 -72340627 - Lx9 LINE L1 -290 7354 6440 5 958 22 56 0 0 chr12 48918358 48918394 -72339136 + AT_rich Low_complexity Low_complexity 1 36 0 5 958 488 84 12 0 chr12 48918398 48918481 -72339049 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 958 315 0 0 0 chr12 48918481 48918516 -72339014 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 958 24 0 0 0 chr12 48920046 48920070 -72337460 + AT_rich Low_complexity Low_complexity 1 24 0 5 958 21 36 0 0 chr12 48921931 48921959 -72335571 + AT_rich Low_complexity Low_complexity 1 28 0 5 958 1535 311 89 48 chr12 48922064 48923794 -72333736 + Lx8 LINE L1 4862 6651 -822 5 958 1252 87 0 0 chr12 48923794 48923966 -72333564 + L1_Mus2 LINE L1 6395 6566 0 5 958 1092 317 401 47 chr12 48923966 48924156 -72333374 + Lx8 LINE L1 6652 6913 -560 5 958 432 67 0 0 chr12 48924538 48924598 -72332932 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 958 209 296 0 0 chr12 48925049 48925103 -72332427 + GA-rich Low_complexity Low_complexity 2 55 0 5 958 2098 138 7 70 chr12 48925436 48925863 -72331667 - Lx2A LINE L1 -1 7007 6608 5 958 626 142 18 0 chr12 48926118 48926231 -72331299 + GA-rich Low_complexity Low_complexity 4 118 0 5 958 709 49 20 0 chr12 48926231 48926333 -72331197 + (GAAAA)n Simple_repeat Simple_repeat 5 108 0 5 958 32713 112 18 10 chr12 48927448 48933918 -72323612 - L1Md_F2 LINE L1 -2 6580 66 5 958 3486 184 0 54 chr12 48934204 48934906 -72322624 - Lx3C LINE L1 -154 6822 6159 6 958 663 235 27 5 chr12 48934921 48935109 -72322421 + GSAT_MM Satellite Satellite 162 353 -118 6 958 1123 189 53 4 chr12 48935106 48935350 -72322180 - Lx3C LINE L1 -820 6156 5901 6 958 1861 222 22 2 chr12 48935338 48935982 -72321548 - L1_Mur3 LINE L1 -4236 1641 984 6 958 1072 212 0 5 chr12 48936453 48936671 -72320859 - Lx2 LINE L1 -6 6991 6775 6 958 6213 128 29 2 chr12 48936671 48937638 -72319892 - Lx2 LINE L1 -354 6643 5651 6 958 5050 110 111 5 chr12 48937644 48939261 -72318269 - MusHAL1 LINE L1 -2987 2899 840 6 958 1247 217 8 12 chr12 48939253 48939496 -72318034 - L1VL4 LINE L1 -5872 430 189 6 958 2397 216 156 42 chr12 48939539 48940078 -72317452 - L1_Mur3 LINE L1 -2820 3060 2493 6 958 2842 166 64 29 chr12 48940078 48940657 -72316873 + MT2B LTR ERVL 3 601 0 6 958 2397 216 156 42 chr12 48940657 48941011 -72316519 - L1_Mur3 LINE L1 -3388 2492 2066 6 958 1053 260 4 0 chr12 48941158 48941408 -72316122 - L1_Mur3 LINE L1 -7413 315 65 6 958 24 85 0 0 chr12 48941524 48941583 -72315947 + AT_rich Low_complexity Low_complexity 1 59 0 6 958 1073 69 14 0 chr12 48942794 48942939 -72314591 + B1_Mm SINE Alu 1 147 0 6 958 379 33 0 48 chr12 48942939 48943002 -72314528 + (CAAAAA)n Simple_repeat Simple_repeat 6 65 0 6 958 2461 135 14 21 chr12 48943096 48943521 -72314009 + BGLII_Mus LTR ERVK 1 422 0 6 958 265 282 253 23 chr12 48943796 48943970 -72313560 + B3 SINE B2 3 216 0 6 958 734 315 46 30 chr12 48944087 48944584 -72312946 + L1MC4a LINE L1 7137 7641 -241 6 958 1807 303 34 35 chr12 48944629 48945333 -72312197 - Lx9 LINE L1 -461 7183 6481 6 958 1490 261 8 13 chr12 48945623 48946007 -72311523 - Lx6 LINE L1 -706 6754 6373 6 958 570 41 0 0 chr12 48946019 48946092 -72311438 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 958 1970 167 3 6 chr12 48946128 48946465 -72311065 - Lx3A LINE L1 -1 6980 6645 6 958 8084 111 8 10 chr12 48946467 48947765 -72309765 - Lx3A LINE L1 -1035 5946 4658 6 958 30 27 0 0 chr12 48948014 48948051 -72309479 + AT_rich Low_complexity Low_complexity 1 37 0 6 958 1029 103 0 0 chr12 48948396 48948532 -72308998 + B1_Mus1 SINE Alu 4 139 -9 6 958 459 0 0 0 chr12 48948532 48948583 -72308947 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 958 225 0 0 0 chr12 48948583 48948607 -72308923 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 958 1059 277 132 25 chr12 48948922 48949400 -72308130 + MT2A LTR ERVL 5 533 0 6 958 310 256 200 8 chr12 48949557 48949687 -72307843 + MERVL_2A-int LTR ERVL 220 374 -5387 6 958 3465 105 0 0 chr12 48949732 48950219 -72307311 - L1_Mus2 LINE L1 -2 6564 6078 6 958 1977 71 19 0 chr12 48950219 48950488 -72307042 + L1_Mus2 LINE L1 5809 6082 -484 6 958 371 364 0 13 chr12 48950784 48950937 -72306593 + T-rich Low_complexity Low_complexity 1 151 0 6 958 375 264 0 0 chr12 48950830 48950936 -72306594 + CT-rich Low_complexity Low_complexity 22 127 0 6 958 558 63 0 0 chr12 48950941 48951020 -72306510 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 958 294 98 0 0 chr12 48952561 48952612 -72304918 + (T)n Simple_repeat Simple_repeat 1 51 0 6 958 23 0 0 0 chr12 48952665 48952688 -72304842 + AT_rich Low_complexity Low_complexity 1 23 0 6 958 5298 131 8 118 chr12 48952691 48953460 -72304070 + L1VL2 LINE L1 100 857 -5478 6 958 243 0 0 0 chr12 48953460 48953487 -72304043 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 958 5298 107 26 30 chr12 48953487 48954100 -72303430 + L1VL2 LINE L1 858 1378 -2237 6 958 4989 67 0 6 chr12 48954132 48954781 -72302749 + L1Md_F2 LINE L1 5926 6570 -12 6 958 312 27 0 0 chr12 48954803 48954840 -72302690 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 958 25 51 0 0 chr12 48954962 48955001 -72302529 + AT_rich Low_complexity Low_complexity 1 39 0 6 958 8186 160 18 7 chr12 48955475 48956916 -72300614 - Lx2B LINE L1 -1 6999 5545 6 958 463 185 7 69 chr12 48956908 48957088 -72300442 - L1_Mm LINE L1 -3789 2094 1927 6 958 464 87 21 21 chr12 48957730 48957824 -72299706 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 958 8196 31 1 0 chr12 48957841 48959309 -72298221 - L1Md_A LINE L1 0 6582 5164 6 958 2774 192 31 3 chr12 48959278 48959852 -72297678 - Lx2B LINE L1 -586 6414 5825 6 958 316 140 0 0 chr12 48959854 48959904 -72297626 + L1_Mur1 LINE L1 5024 5073 -813 6 958 38 51 0 0 chr12 48960386 48960445 -72297085 + AT_rich Low_complexity Low_complexity 1 59 0 6 958 41113 7 0 1 chr12 48960451 48967240 -72290290 - L1Md_A LINE L1 0 6582 1 6 958 642 229 0 0 chr12 48967419 48967550 -72289980 - ORR1C2 LTR MaLR -253 131 1 6 958 868 289 105 31 chr12 48967553 48967945 -72289585 - Lx9 LINE L1 -931 6713 6293 6 958 1747 222 40 13 chr12 48968147 48968625 -72288905 + L1_Mur3 LINE L1 3500 3990 -1890 6 958 1668 167 101 12 chr12 48968623 48968951 -72288579 + Lx2 LINE L1 6641 6997 0 6 958 754 166 104 0 chr12 48968954 48969117 -72288413 + L1_Mur3 LINE L1 3978 4157 -1723 6 958 7841 141 36 15 chr12 48969119 48970637 -72286893 + Lx3A LINE L1 5435 6981 0 6 958 207 100 0 0 chr12 48971159 48971189 -72286341 + (T)n Simple_repeat Simple_repeat 1 30 0 6 958 918 63 103 0 chr12 48971207 48971333 -72286197 - B1_Mm SINE Alu -8 139 1 6 958 1945 186 13 13 chr12 48972415 48972797 -72284733 - Lx2 LINE L1 -1 6996 6615 6 958 830 39 0 0 chr12 48972798 48972901 -72284629 - L1_Mus2 LINE L1 -580 5986 5884 6 958 3303 63 19 2 chr12 48972901 48973330 -72284200 + L1_Mus2 LINE L1 6131 6566 0 6 958 2299 178 40 6 chr12 48973546 48974016 -72283514 + Lx LINE L1 6168 6653 -1 6 958 24 53 0 0 chr12 48974087 48974125 -72283405 + AT_rich Low_complexity Low_complexity 1 38 0 6 958 369 0 0 0 chr12 48974894 48974935 -72282595 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 958 309 109 0 0 chr12 48975029 48975075 -72282455 + (TTA)n Simple_repeat Simple_repeat 2 47 0 6 958 2121 180 0 3 chr12 48975075 48975454 -72282076 - Lx3C LINE L1 -5 6971 6594 6 958 6276 147 45 121 chr12 48975456 48975925 -72281605 - L1_Mur1 LINE L1 -52 5834 5359 6 958 1010 61 0 0 chr12 48975925 48976057 -72281473 - B1_Mm SINE Alu 0 147 16 6 958 6276 147 45 121 chr12 48976057 48976899 -72280631 - L1_Mur1 LINE L1 -52 5358 4502 6 958 180 0 0 0 chr12 48977076 48977096 -72280434 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 958 252 0 0 0 chr12 48977096 48977124 -72280406 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 958 186 103 0 0 chr12 48977344 48977373 -72280157 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 958 714 306 53 41 chr12 48977390 48978314 -72279216 - L1MA6 LINE L1 -462 5829 4940 6 958 21 0 0 0 chr12 48978561 48978582 -72278948 + AT_rich Low_complexity Low_complexity 1 21 0 6 958 3197 98 4 2 chr12 48978919 48979411 -72278119 - MusHAL1 LINE L1 -632 2080 1588 6 958 416 194 0 0 chr12 48979404 48979476 -72278054 - Lx5 LINE L1 -343 6707 6636 6 958 7067 108 7 17 chr12 48979499 48980959 -72276571 - L1_Mus3 LINE L1 -2 6636 5191 6 958 2243 138 0 58 chr12 48980961 48981376 -72276154 + L1_Mm LINE L1 4651 5041 -842 6 958 3881 217 92 18 chr12 48981369 48981898 -72275632 - Lx5 LINE L1 -402 6648 6125 6 958 599 39 13 0 chr12 48981898 48981976 -72275554 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 958 3881 217 92 18 chr12 48981976 48982403 -72275127 - Lx5 LINE L1 -926 6124 5623 6 958 1325 221 70 130 chr12 48982403 48982919 -72274611 - RMER6C LTR ERVK 0 690 206 6 958 225 211 16 66 chr12 48982936 48982997 -72274533 - RMER6C LTR ERVK -662 58 1 6 958 1238 208 147 17 chr12 48982997 48983350 -72274180 - Lx5 LINE L1 -257 5620 5222 6 958 2977 78 12 7 chr12 48983350 48983766 -72273764 + BGLII LTR ERVK 1 418 -3 6 958 517 138 46 0 chr12 48984185 48984272 -72273258 + RMER3D-int LTR ERVK 493 583 -2259 6 958 694 230 0 43 chr12 48984284 48984493 -72273037 + RMER3D-int LTR ERVK 652 851 -1991 6 958 889 215 140 79 chr12 48984551 48984825 -72272705 + RMER3D-int LTR ERVK 624 882 -1960 6 958 3394 51 5 0 chr12 48984825 48985255 -72272275 + L1Md_F2 LINE L1 6151 6582 0 6 958 889 147 30 32 chr12 48985255 48985465 -72272065 + RMER3D-int LTR ERVK 883 1080 -6326 6 958 430 110 72 18 chr12 48985465 48985576 -72271954 + GA-rich Low_complexity Low_complexity 4 120 0 6 958 1703 192 149 24 chr12 48985622 48986084 -72271446 + RMER3D-int LTR ERVK 1014 1533 -1309 6 958 509 168 34 50 chr12 48986116 48986235 -72271295 + RMER3D-int LTR ERVK 1532 1648 -1194 6 958 198 0 0 0 chr12 48986310 48986332 -72271198 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6 958 2669 222 51 56 chr12 48986394 48986523 -72271007 + RMER3D-int LTR ERVK 1968 2085 -757 6 958 2964 95 109 0 chr12 48986523 48986909 -72270621 + L1_Mus1 LINE L1 6078 6476 -91 6 958 2236 131 3 80 chr12 48986909 48987298 -72270232 + RLTR10D LTR ERVK 1 359 0 6 958 2964 95 109 0 chr12 48987298 48987352 -72270178 + L1_Mus1 LINE L1 6477 6565 -2 6 958 2669 222 51 56 chr12 48987352 48988100 -72269430 + RMER3D-int LTR ERVK 2086 2841 -1 6 958 3072 75 10 0 chr12 48988101 48988515 -72269015 + BGLII LTR ERVK 1 418 -3 6 958 12935 216 36 65 chr12 48988518 48989398 -72268132 - Lx5 LINE L1 -650 5227 4400 6 958 387 0 0 0 chr12 48989398 48989441 -72268089 + (TTA)n Simple_repeat Simple_repeat 3 45 0 6 958 12935 216 36 65 chr12 48989441 48989973 -72267557 - Lx5 LINE L1 -1478 4399 3917 6 958 2950 135 0 27 chr12 48989973 48990460 -72267070 + Lx LINE L1 6167 6640 -14 6 958 12935 216 36 65 chr12 48990460 48990797 -72266733 - Lx5 LINE L1 -1961 3916 3598 6 958 8115 40 1 4 chr12 48990797 48991784 -72265746 + L1Md_F2 LINE L1 5588 6571 -11 6 958 12935 216 36 65 chr12 48991784 48993278 -72264252 - Lx5 LINE L1 -2280 3597 2070 6 958 297 0 0 0 chr12 48993278 48993311 -72264219 + (TGG)n Simple_repeat Simple_repeat 3 35 0 6 958 12935 216 36 65 chr12 48993311 48993970 -72263560 - Lx5 LINE L1 -3808 2069 1436 6 958 190 355 137 34 chr12 48994676 48994968 -72262562 - L2 LINE L2 -1584 1835 1514 6 958 369 332 142 27 chr12 48996771 48997319 -72260211 - L1MA9 LINE L1 -59 6253 5643 6 958 378 304 86 78 chr12 48998320 48998563 -72258967 - MLT1B LTR MaLR 0 390 146 6 958 1297 237 102 3 chr12 48998584 48998889 -72258641 - RLTR30 LTR ERV1 -30 349 15 6 958 344 376 20 13 chr12 48998887 48999038 -72258492 - MLT1B LTR MaLR -238 152 1 6 958 884 142 0 33 chr12 49002344 49002497 -72255033 + B1_Mus1 SINE Alu 1 148 0 1 958 414 174 0 0 chr12 49002498 49002607 -72254923 + A-rich Low_complexity Low_complexity 1 109 0 2 958 23 68 0 0 chr12 49002644 49002688 -72254842 + AT_rich Low_complexity Low_complexity 1 44 0 3 958 727 367 36 27 chr12 49002740 49003188 -72254342 - Lx8 LINE L1 -111 7362 6911 4 958 306 280 36 9 chr12 49003183 49003293 -72254237 + Lx7 LINE L1 5602 5717 -1756 5 958 226 172 44 33 chr12 49003294 49003384 -72254146 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 958 240 122 0 0 chr12 49003385 49003426 -72254104 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 958 219 152 0 0 chr12 49003431 49003477 -72254053 + GA-rich Low_complexity Low_complexity 1 46 0 8 958 662 247 68 6 chr12 49003506 49003669 -72253861 - ORR1D2 LTR MaLR -8 362 190 9 958 1027 174 28 0 chr12 49003696 49003909 -72253621 - Lx LINE L1 0 6654 6436 1 958 231 300 0 16 chr12 49003910 49003971 -72253559 - ORR1D2 LTR MaLR -249 125 66 9 958 1303 304 0 23 chr12 49004011 49004405 -72253125 - ORR1D2-int LTR MaLR 0 1370 986 9 958 246 272 116 23 chr12 49005021 49005194 -72252336 - L1M2 LINE L1 -1590 4553 4365 1 958 317 305 114 68 chr12 49005287 49005504 -72252026 - L1M2 LINE L1 -1924 4222 3995 1 958 298 215 15 15 chr12 49005729 49005795 -72251735 - MTC LTR MaLR -8 413 348 1 958 21 57 0 0 chr12 49005795 49005830 -72251700 + AT_rich Low_complexity Low_complexity 1 35 0 1 958 2721 86 27 12 chr12 49005836 49006238 -72251292 - L1Md_F2 LINE L1 -14 6568 6161 1 958 4335 53 0 0 chr12 49006238 49006768 -72250762 + L1Md_F2 LINE L1 5601 6130 -452 1 958 1042 276 17 31 chr12 49006768 49007056 -72250474 - MTC LTR MaLR -33 388 105 1 958 815 251 4 80 chr12 49007336 49007396 -72250134 - B3 SINE B2 -8 208 152 1 958 4832 75 15 15 chr12 49007396 49008070 -72249460 - L1_Mus2 LINE L1 0 6566 5893 1 958 815 251 4 80 chr12 49008070 49008234 -72249296 - B3 SINE B2 -65 151 1 1 958 3011 285 69 42 chr12 49008264 49009307 -72248223 - Lx6 LINE L1 -14 7446 6376 1 958 565 151 32 0 chr12 49009310 49009403 -72248127 - MTC LTR MaLR -325 96 1 1 958 968 259 85 42 chr12 49009407 49009801 -72247729 - BGLII_B LTR ERVK 0 422 1 1 958 842 345 103 38 chr12 49009810 49010804 -72246726 - L1M2 LINE L1 -2465 3678 2621 1 958 390 57 0 0 chr12 49011139 49011192 -72246338 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 958 4377 69 0 0 chr12 49011246 49011812 -72245718 - L1Md_F2 LINE L1 -533 5350 4785 2 958 4133 60 2 6 chr12 49011804 49012566 -72244964 + L1Md_F2 LINE L1 5362 6124 -458 2 958 508 133 0 19 chr12 49012574 49012681 -72244849 + MT-int LTR MaLR 876 980 -118 2 958 1271 183 8 20 chr12 49012681 49012926 -72244604 - L1_Mm LINE L1 -143 5740 5499 2 958 7493 180 34 13 chr12 49012927 49013624 -72243906 + L1VL4 LINE L1 499 1220 -2339 2 958 1218 106 10 55 chr12 49013624 49013823 -72243707 - B2_Mm1t SINE B2 -3 190 1 2 958 7493 160 34 17 chr12 49013823 49014951 -72242579 + L1VL4 LINE L1 1221 2362 -1197 2 958 245 296 27 34 chr12 49015018 49015165 -72242365 + L1M5 LINE L1 5130 5275 -871 2 958 4937 209 21 54 chr12 49015405 49016649 -72240881 - L1_Mur2 LINE L1 -176 5701 4499 2 958 7495 155 20 17 chr12 49016651 49017960 -72239570 + Lx2 LINE L1 5674 6986 -11 2 958 28 48 0 0 chr12 49018436 49018478 -72239052 + AT_rich Low_complexity Low_complexity 1 42 0 2 958 5432 138 9 39 chr12 49018621 49019647 -72237883 + L1_Mur1 LINE L1 4376 5370 -516 2 119 4386 137 4 27 chr12 49019672 49021067 -72236463 + Lx3B LINE L1 452 1808 -4075 3 959 12989 117 19 84 chr12 49021067 49023016 -72234514 + Lx3B LINE L1 3569 5356 -527 3 959 4474 85 3 24 chr12 49023016 49023654 -72233876 + L1Md_F2 LINE L1 5958 6582 0 3 959 12989 149 21 46 chr12 49023654 49024694 -72232836 + Lx3B LINE L1 5357 6407 -566 3 959 1266 184 49 49 chr12 49024694 49024979 -72232551 + Lx3B LINE L1 6684 6968 -5 3 959 22 56 0 0 chr12 49025681 49025717 -72231813 + AT_rich Low_complexity Low_complexity 1 36 0 3 959 721 349 45 11 chr12 49026939 49027203 -72230327 + B4A SINE B4 20 292 0 3 959 873 298 49 23 chr12 49027421 49027768 -72229762 - Lx8 LINE L1 -532 6941 6586 3 959 462 18 0 0 chr12 49028047 49028102 -72229428 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 959 475 263 25 36 chr12 49028148 49028284 -72229246 + B3A SINE B2 2 139 -56 3 959 22 80 0 0 chr12 49028528 49028578 -72228952 + AT_rich Low_complexity Low_complexity 1 50 0 3 959 1099 102 0 0 chr12 49028744 49028891 -72228639 + B1_Mus1 SINE Alu 2 148 0 3 959 262 115 39 0 chr12 49028891 49028943 -72228587 + GA-rich Low_complexity Low_complexity 3 56 0 3 959 32 0 0 0 chr12 49029596 49029628 -72227902 + AT_rich Low_complexity Low_complexity 1 32 0 4 959 1043 110 7 0 chr12 49029628 49029773 -72227757 - B1_Mus2 SINE Alu 0 147 2 4 959 224 256 0 0 chr12 49029806 49029849 -72227681 + B1F SINE Alu 56 98 -51 4 959 2581 187 71 57 chr12 49030163 49030780 -72226750 + Lx4B LINE L1 6395 7020 -38 4 959 243 179 81 35 chr12 49030847 49030934 -72226596 + Lx5 LINE L1 6958 7048 -2 4 959 438 286 101 10 chr12 49031612 49031789 -72225741 + MTD LTR MaLR 8 182 -218 4 959 1208 284 39 0 chr12 49031796 49032131 -72225399 - Lx9 LINE L1 -254 7390 7043 4 959 313 313 0 15 chr12 49032131 49032267 -72225263 - Lx9 LINE L1 -724 6920 6787 4 959 242 264 27 14 chr12 49032262 49032335 -72225195 + Lx9 LINE L1 7382 7455 -189 4 959 1023 217 163 30 chr12 49032442 49032803 -72224727 + RLTR9E LTR ERVK 1 409 0 4 959 10387 145 6 10 chr12 49032804 49034466 -72223064 + ETnERV-int LTR ERVK 2 1656 -1658 4 959 1114 326 68 46 chr12 49034519 49035403 -72222127 + ETnERV-int LTR ERVK 1597 2499 -3668 4 959 2264 85 6 3 chr12 49035432 49035752 -72221778 + IAPEY2_LTR LTR ERVK 34 354 -3 4 959 9245 129 11 65 chr12 49035752 49037520 -72220010 + IAPEY3-int LTR ERVK 17 2037 -5643 4 959 964 128 20 33 chr12 49037520 49037708 -72219822 + IAPEY2_LTR LTR ERVK 134 357 0 5 959 15415 162 25 19 chr12 49037709 49040632 -72216898 + ETnERV2-int LTR ERVK 2536 6227 -1179 5 959 7017 125 8 1 chr12 49040681 49041656 -72215874 + ETnERV2-int LTR ERVK 6222 7203 -203 5 959 682 234 228 13 chr12 49041656 49041972 -72215558 + RLTR13D6 LTR ERVK 154 537 -365 5 959 416 97 39 77 chr12 49041972 49042050 -72215480 + ETnERV2-int LTR ERVK 7329 7403 -3 5 959 774 237 200 48 chr12 49042052 49042407 -72215123 + RLTR9E LTR ERVK 1 409 0 5 959 285 256 29 52 chr12 49042413 49042549 -72214981 + Lx9 LINE L1 7510 7642 -2 4 959 284 354 23 8 chr12 49042586 49042717 -72214813 + MTD LTR MaLR 247 379 0 4 959 417 20 0 0 chr12 49043605 49043655 -72213875 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 959 285 29 0 0 chr12 49043655 49043688 -72213842 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 959 619 42 0 0 chr12 49043805 49043877 -72213653 + L1Md_F2 LINE L1 5515 5586 -297 5 959 7796 45 27 3 chr12 49043877 49044847 -72212683 + L1Md_F2 LINE L1 5587 6579 -3 5 959 267 203 0 0 chr12 49044851 49044910 -72212620 + A-rich Low_complexity Low_complexity 1 59 0 5 959 237 378 39 8 chr12 49044974 49045102 -72212428 + MLT1E1 LTR MaLR 523 654 0 5 959 335 346 41 49 chr12 49045376 49045417 -72212113 - L1MD LINE L1 -563 5679 5638 5 959 4836 163 55 23 chr12 49045417 49046370 -72211160 + RLTR13C1 LTR ERVK 1 983 0 5 959 335 346 41 49 chr12 49046370 49046571 -72210959 - L1MD LINE L1 -605 5637 5439 5 959 2593 189 77 97 chr12 49046604 49046982 -72210548 + RMER6C LTR ERVK 6 351 -339 6 959 333 47 0 0 chr12 49046982 49047025 -72210505 + (ATG)n Simple_repeat Simple_repeat 2 44 0 6 959 2593 189 77 97 chr12 49047025 49047345 -72210185 + RMER6C LTR ERVK 352 690 0 6 959 233 29 29 0 chr12 49047775 49047809 -72209721 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 959 850 92 0 0 chr12 49047810 49047929 -72209601 - B1_Mm SINE Alu -1 146 28 6 959 375 341 49 55 chr12 49047951 49048338 -72209192 - HERVL74-int LTR ERVL -1487 4198 3819 6 959 2090 123 95 14 chr12 49048338 49048708 -72208822 + MTB LTR MaLR 1 400 0 6 959 375 341 49 55 chr12 49048708 49048813 -72208717 - HERVL74-int LTR ERVL -1867 3818 3709 6 959 330 248 256 0 chr12 49048859 49048984 -72208546 - ORR1C2 LTR MaLR 0 384 228 6 959 2691 221 65 11 chr12 49049016 49049588 -72207942 - RMER20B LTR ERVK -24 603 1 6 959 1411 236 90 60 chr12 49049588 49049972 -72207558 - MTC LTR MaLR -23 398 3 6 959 752 255 96 9 chr12 49050396 49050443 -72207087 - ORR1C2 LTR MaLR -147 237 173 6 959 891 84 0 0 chr12 49050443 49050586 -72206944 + (GA)n Simple_repeat Simple_repeat 2 144 0 6 959 752 255 96 9 chr12 49050586 49050756 -72206774 - ORR1C2 LTR MaLR -212 172 2 6 959 1227 313 90 8 chr12 49051020 49051497 -72206033 - RMER20A LTR ERVK 0 516 1 7 959 265 75 19 19 chr12 49051574 49051628 -72205902 + (TTTTG)n Simple_repeat Simple_repeat 1 54 0 7 959 228 135 0 0 chr12 49051934 49051971 -72205559 + (T)n Simple_repeat Simple_repeat 1 37 0 7 959 694 236 7 7 chr12 49052051 49052196 -72205334 - B1_Mus2 SINE Alu 0 147 3 7 959 414 332 11 7 chr12 49052487 49052757 -72204773 - L1M2 LINE L1 -1435 4708 4438 7 959 24 53 0 0 chr12 49052806 49052844 -72204686 + AT_rich Low_complexity Low_complexity 1 38 0 7 959 8146 81 34 2 chr12 49052920 49054738 -72202792 - L1Md_F2 LINE L1 0 6582 4730 7 959 480 210 97 7 chr12 49054731 49054875 -72202655 - Lx LINE L1 -7 6647 6491 7 959 1683 139 25 19 chr12 49055106 49055422 -72202108 - Lx3_Mus LINE L1 -691 6318 6001 7 959 1670 234 129 42 chr12 49055422 49055996 -72201534 + RLTR1 LTR ERV1 1 624 0 7 959 1178 121 5 10 chr12 49055996 49056082 -72201448 - Lx3A LINE L1 -985 5996 5910 8 959 236 53 26 0 chr12 49056082 49056120 -72201410 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 959 1178 121 5 10 chr12 49056120 49056226 -72201304 - Lx3A LINE L1 -1072 5909 5806 8 959 4456 117 30 0 chr12 49056226 49056884 -72200646 + Lx3_Mus LINE L1 6332 7009 0 8 959 21 36 0 0 chr12 49056884 49056912 -72200618 + AT_rich Low_complexity Low_complexity 1 28 0 8 959 7035 114 8 7 chr12 49056944 49058177 -72199353 + L1_Mus3 LINE L1 5396 6634 -4 8 959 30 0 0 0 chr12 49058344 49058374 -72199156 + AT_rich Low_complexity Low_complexity 1 30 0 8 959 283 368 43 69 chr12 49058411 49058688 -72198842 + MTD LTR MaLR 7 244 -135 8 959 549 315 25 34 chr12 49058742 49058946 -72198584 - RMER12 LTR ERVK 0 1322 1121 8 959 2567 236 105 37 chr12 49059009 49059774 -72197756 - RMER12 LTR ERVK -85 1237 421 8 959 414 31 0 44 chr12 49059790 49059858 -72197672 - L1Md_F2 LINE L1 0 6582 6518 8 959 3915 75 2 17 chr12 49059859 49060391 -72197139 + L1Md_F2 LINE L1 6012 6535 -47 8 959 4392 74 0 5 chr12 49060394 49060977 -72196553 - L1_Mus1 LINE L1 0 6567 5988 9 959 4046 97 26 9 chr12 49060977 49061548 -72195982 - RLTR13D1 LTR ERVK 0 806 226 9 959 2931 146 40 23 chr12 49061527 49061687 -72195843 - RLTR13D1 LTR ERVK -368 534 360 9 959 242 29 0 28 chr12 49061687 49061723 -72195807 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 9 959 2931 146 40 23 chr12 49061723 49062087 -72195443 - RLTR13D1 LTR ERVK -543 359 2 9 959 3330 97 5 14 chr12 49062087 49062724 -72194806 - L1_Mus1 LINE L1 -574 5993 5365 9 959 2512 107 0 3 chr12 49062700 49063083 -72194447 + L1_Mm LINE L1 3911 4292 -1591 9 959 189 0 0 0 chr12 49063088 49063109 -72194421 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 959 791 172 59 25 chr12 49064274 49064477 -72193053 + Lx9 LINE L1 7308 7517 -127 9 959 243 183 13 53 chr12 49064707 49064782 -72192748 + A-rich Low_complexity Low_complexity 3 74 0 9 959 982 160 83 0 chr12 49065089 49065270 -72192260 + Lx2A1 LINE L1 6112 6307 -701 9 959 183 42 0 0 chr12 49065280 49065304 -72192226 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 959 567 60 0 0 chr12 49065311 49065394 -72192136 - Lx3A LINE L1 0 6981 6899 9 959 26 0 0 0 chr12 49065816 49065842 -72191688 + AT_rich Low_complexity Low_complexity 1 26 0 1 959 180 111 0 0 chr12 49066498 49066525 -72191005 + (CTTA)n Simple_repeat Simple_repeat 4 30 0 1 959 605 276 0 1 chr12 49066578 49066738 -72190792 + Lx3C LINE L1 6695 6853 -147 1 959 370 284 0 0 chr12 49067422 49067531 -72189999 - L1_Mur3 LINE L1 -692 5188 5080 1 959 318 373 22 0 chr12 49067525 49067659 -72189871 + Lx8 LINE L1 7205 7341 -132 1 959 371 411 6 74 chr12 49068068 49068244 -72189286 + RSINE1 SINE B4 1 164 -1 1 959 21 0 0 0 chr12 49068416 49068437 -72189093 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 1238 248 160 8 chr12 49070056 49070430 -72187100 + Lx2B LINE L1 6560 6990 -10 1 959 27 73 0 0 chr12 49070430 49070485 -72187045 + AT_rich Low_complexity Low_complexity 1 55 0 1 959 508 64 0 49 chr12 49071290 49071372 -72186158 + L1_Mus2 LINE L1 6489 6566 0 1 959 2787 180 35 13 chr12 49072115 49072878 -72184652 - Lx5 LINE L1 -798 6252 5458 1 959 3275 263 36 1 chr12 49072875 49073622 -72183908 + Lx5 LINE L1 6233 7005 -45 1 959 732 331 37 20 chr12 49073920 49074216 -72183314 - MTE2b LTR MaLR -9 370 70 1 959 219 286 171 0 chr12 49074707 49074777 -72182753 - MIRc SINE MIR -102 166 85 1 959 23 33 0 0 chr12 49074880 49074910 -72182620 + AT_rich Low_complexity Low_complexity 1 30 0 1 959 881 139 14 7 chr12 49074919 49075064 -72182466 + B1_Mur4 SINE Alu 5 150 0 1 959 24 53 0 0 chr12 49075638 49075676 -72181854 + AT_rich Low_complexity Low_complexity 1 38 0 1 959 275 309 44 77 chr12 49076207 49076389 -72181141 - RLTR25B LTR ERVK -852 176 1 1 959 263 311 47 58 chr12 49076447 49076638 -72180892 + L1MC2 LINE L1 4921 5109 -1037 1 959 503 277 119 4 chr12 49077041 49077284 -72180246 + L1MC2 LINE L1 5614 5884 -460 1 959 253 83 20 40 chr12 49077324 49077374 -72180156 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1 959 276 314 110 13 chr12 49077421 49077721 -72179809 + L1MC2 LINE L1 6005 6333 0 1 959 7245 79 7 6 chr12 49078023 49079000 -72178530 - L1_Mus1 LINE L1 0 6567 5590 1 959 1533 68 0 0 chr12 49079016 49079206 -72178324 + L1_Mus1 LINE L1 5406 5595 -288 1 959 186 43 0 0 chr12 49079235 49079258 -72178272 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 959 640 343 33 22 chr12 49079504 49079778 -72177752 + MTD LTR MaLR 11 287 -132 1 959 536 303 83 39 chr12 49081885 49082246 -72175284 - MTEb LTR MaLR -2 377 1 1 959 21 36 0 0 chr12 49082333 49082361 -72175169 + AT_rich Low_complexity Low_complexity 1 28 0 1 959 1864 287 48 55 chr12 49082367 49082994 -72174536 - Lx5 LINE L1 0 7050 6445 1 959 1845 103 7 4 chr12 49083086 49083359 -72174171 - L1_Mus3 LINE L1 -14 6624 6351 1 959 1297 165 53 4 chr12 49083367 49083610 -72173920 + Lx2 LINE L1 6743 6997 0 1 959 293 188 0 12 chr12 49083795 49083876 -72173654 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 959 3081 44 5 37 chr12 49084695 49085098 -72172432 + RLTR10 LTR ERVK 1 390 0 1 959 7359 166 28 6 chr12 49085168 49086476 -72171054 - Lx2B LINE L1 -39 6961 5625 1 959 353 253 0 12 chr12 49086986 49087070 -72170460 + Lx8 LINE L1 5838 5920 -1553 1 959 345 349 23 8 chr12 49088618 49088748 -72168782 + ID_B1 SINE B4 85 216 -8 1 959 243 363 50 29 chr12 49089902 49089916 -72167614 + ID_B1 SINE B4 77 218 -6 1 959 493 248 64 0 chr12 49089916 49090041 -72167489 + B1_Mus2 SINE Alu 9 141 -6 1 959 221 0 0 33 chr12 49090241 49090271 -72167259 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 959 1137 69 7 0 chr12 49090558 49090703 -72166827 + B1_Mm SINE Alu 1 146 -1 1 959 537 269 40 33 chr12 49090909 49091059 -72166471 + MTE2b LTR MaLR 216 366 -13 1 959 894 326 82 6 chr12 49091087 49091417 -72166113 + MTE-int LTR MaLR 51 405 -1175 1 959 379 283 25 0 chr12 49091558 49091693 -72165837 - B3 SINE B2 -50 145 2 1 959 683 322 97 36 chr12 49091698 49092028 -72165502 + MTE2a LTR MaLR 6 377 -2 1 959 3873 171 44 0 chr12 49092920 49093640 -72163890 - Lx LINE L1 -3 6651 5900 1 959 225 0 0 0 chr12 49094838 49094863 -72162667 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 959 412 331 23 23 chr12 49094883 49095013 -72162517 - RSINE1 SINE B4 -24 141 12 1 959 5770 83 26 2 chr12 49095049 49095868 -72161662 + L1Md_A LINE L1 214 1051 -5673 1 959 14644 25 1 1 chr12 49095862 49097597 -72159933 + L1Md_T LINE L1 3852 5585 -298 1 959 8282 35 3 1 chr12 49097599 49098591 -72158939 + L1Md_T LINE L1 5588 6581 -1 1 959 21 36 0 0 chr12 49098703 49098731 -72158799 + AT_rich Low_complexity Low_complexity 1 28 0 1 959 595 281 17 11 chr12 49098750 49098930 -72158600 - B3A SINE B2 -16 182 2 1 959 6384 134 17 38 chr12 49099622 49100732 -72156798 - Lx2 LINE L1 -2 6995 5909 1 959 755 318 110 18 chr12 49100849 49101349 -72156181 - Charlie1a DNA MER1_type -356 1099 554 1 959 235 329 84 35 chr12 49101463 49101605 -72155925 - Charlie1a DNA MER1_type -1076 379 231 1 959 804 265 83 58 chr12 49102112 49102430 -72155100 + Lx9 LINE L1 7176 7515 -129 1 959 195 42 0 0 chr12 49102430 49102454 -72155076 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 959 804 265 83 58 chr12 49102454 49102510 -72155020 + Lx9 LINE L1 7516 7557 -87 1 959 1072 82 0 20 chr12 49102510 49102660 -72154870 + B1_Mus1 SINE Alu 2 148 0 1 959 804 265 83 58 chr12 49102660 49102729 -72154801 + Lx9 LINE L1 7558 7631 -13 1 959 1338 116 122 4 chr12 49102724 49103017 -72154513 + L1_Mur2 LINE L1 3347 3664 -2213 1 959 1210 41 0 13 chr12 49103017 49103166 -72154364 + B1_Mm SINE Alu 1 147 0 1 959 8218 173 99 20 chr12 49103229 49103522 -72154008 + L1_Mur2 LINE L1 3347 3664 -2213 1 959 1223 48 0 0 chr12 49103522 49103669 -72153861 + B1_Mm SINE Alu 1 147 0 1 959 8218 173 99 20 chr12 49103669 49105236 -72152294 + L1_Mur2 LINE L1 3665 5346 -531 1 959 988 76 82 0 chr12 49105236 49105394 -72152136 + L1_Mus3 LINE L1 6465 6635 -3 1 959 8218 173 99 20 chr12 49105394 49105411 -72152119 + L1_Mur2 LINE L1 5347 5372 -505 1 959 2679 86 53 3 chr12 49105411 49105786 -72151744 - MTA_Mm LTR MaLR 0 396 3 1 959 768 114 30 0 chr12 49105788 49105919 -72151611 - MTA_Mm-int LTR MaLR 0 1098 964 1 959 3426 23 0 0 chr12 49105919 49106312 -72151218 - L1Md_T LINE L1 -174 6408 6016 1 959 1323 53 0 0 chr12 49106312 49106481 -72151049 + L1Md_T LINE L1 6414 6582 0 1 959 6708 95 11 7 chr12 49106499 49107475 -72150055 - MTA_Mm-int LTR MaLR -118 980 1 1 959 3161 61 2 5 chr12 49107475 49107872 -72149658 - MTA_Mm LTR MaLR 0 396 1 1 959 6546 138 35 8 chr12 49107873 49109116 -72148414 + Lx LINE L1 5376 6648 -6 1 959 1012 351 52 36 chr12 49109551 49110051 -72147479 - Lx8 LINE L1 -163 7310 6803 1 959 779 0 11 0 chr12 49110111 49110202 -72147328 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 1 959 1028 322 11 0 chr12 49110290 49110573 -72146957 + B4 SINE B4 5 290 -2 1 959 471 331 40 7 chr12 49111066 49111218 -72146312 + B3A SINE B2 20 176 -22 1 959 200 125 50 0 chr12 49113019 49113059 -72144471 + GA-rich Low_complexity Low_complexity 2 43 0 1 959 1266 271 16 16 chr12 49114553 49114924 -72142606 + ORR1D1 LTR MaLR 1 371 -3 1 959 897 126 0 0 chr12 49115098 49115241 -72142289 + (TCC)n Simple_repeat Simple_repeat 2 144 0 1 959 369 290 47 31 chr12 49115599 49115727 -72141803 - ID_B1 SINE B4 -7 217 88 1 959 333 0 0 0 chr12 49115841 49115878 -72141652 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1 959 4370 124 36 7 chr12 49117693 49118394 -72139136 - Lx LINE L1 -7 6647 5927 1 959 28 48 0 0 chr12 49118693 49118735 -72138795 + AT_rich Low_complexity Low_complexity 1 42 0 1 959 841 163 11 6 chr12 49118735 49118914 -72138616 + Lx LINE L1 6475 6654 0 1 959 21 0 0 0 chr12 49119473 49119494 -72138036 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 220 365 0 23 chr12 49120648 49120735 -72136795 + B4 SINE B4 1 85 -207 1 959 310 333 139 67 chr12 49120759 49120784 -72136746 - RMER15 LTR ERVL -2 573 552 1 959 3528 76 95 19 chr12 49120784 49121308 -72136222 + LTRIS2 LTR ERV1 1 564 0 1 959 310 333 139 67 chr12 49121308 49121549 -72135981 - RMER15 LTR ERVL -24 551 288 1 959 986 215 10 19 chr12 49121661 49121870 -72135660 + RLTR11A LTR ERVK 17 223 -305 1 959 1297 248 66 43 chr12 49122527 49122965 -72134565 - Lx9 LINE L1 -16 7628 7181 1 959 578 257 21 84 chr12 49122964 49123155 -72134375 + Lx9 LINE L1 6694 6872 -772 1 959 23 68 0 0 chr12 49123224 49123268 -72134262 + AT_rich Low_complexity Low_complexity 1 44 0 1 959 989 110 14 0 chr12 49123425 49123570 -72133960 + B1_Mus1 SINE Alu 1 147 -1 1 959 335 318 57 30 chr12 49123582 49123812 -72133718 + L1MA6 LINE L1 5800 6035 -265 1 959 21 36 0 0 chr12 49124046 49124074 -72133456 + AT_rich Low_complexity Low_complexity 1 28 0 1 959 23 33 0 0 chr12 49124616 49124646 -72132884 + AT_rich Low_complexity Low_complexity 1 30 0 1 959 432 0 0 0 chr12 49124934 49124982 -72132548 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 959 300 158 0 0 chr12 49124982 49125039 -72132491 + GA-rich Low_complexity Low_complexity 1 57 0 1 959 243 61 0 0 chr12 49125306 49125339 -72132191 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 959 624 154 0 30 chr12 49125834 49125968 -72131562 - Lx3A LINE L1 -6 6975 6846 1 959 305 306 73 0 chr12 49126024 49126148 -72131382 + MLT1A1 LTR MaLR 1 133 -275 1 959 270 106 0 0 chr12 49126197 49126244 -72131286 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 959 192 125 0 0 chr12 49126267 49126299 -72131231 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1 959 668 326 25 30 chr12 49127839 49128076 -72129454 + B4A SINE B4 28 263 -29 1 959 1787 58 4 0 chr12 49128389 49128614 -72128916 - L1_Mus1 LINE L1 -3 6564 6339 1 959 450 0 0 0 chr12 49129584 49129634 -72127896 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1 959 260 248 20 10 chr12 49129853 49129955 -72127575 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 959 3009 196 65 16 chr12 49130125 49130766 -72126764 + L1_Mur3 LINE L1 5113 5785 -95 1 959 1184 169 78 24 chr12 49130781 49131036 -72126494 + RMER6B LTR ERVK 1 269 -192 1 959 21 0 0 0 chr12 49131049 49131070 -72126460 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 288 0 0 0 chr12 49131077 49131109 -72126421 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 959 4219 125 12 9 chr12 49131113 49131777 -72125753 - Lx3A LINE L1 -19 6962 6297 1 959 435 298 8 0 chr12 49131777 49131908 -72125622 + Lx6 LINE L1 7153 7284 -176 2 959 34 24 0 0 chr12 49131908 49131949 -72125581 + AT_rich Low_complexity Low_complexity 1 41 0 2 959 703 357 32 21 chr12 49132231 49132514 -72125016 + B4 SINE B4 3 288 -4 2 959 504 32 0 0 chr12 49132544 49132606 -72124924 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 959 689 157 8 0 chr12 49132645 49132779 -72124751 + (CATATA)n Simple_repeat Simple_repeat 6 140 0 2 959 198 0 0 0 chr12 49134257 49134279 -72123251 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 959 3378 47 12 0 chr12 49135097 49135523 -72122007 - L1_Mus1 LINE L1 -519 6048 5618 2 959 1330 88 0 0 chr12 49135521 49135692 -72121838 + L1_Mus1 LINE L1 6030 6200 -367 2 959 1477 43 0 0 chr12 49135692 49135878 -72121652 + L1_Mus1 LINE L1 6382 6567 0 2 959 1503 123 8 8 chr12 49136089 49136334 -72121196 - L1_Mm LINE L1 -1007 4876 4632 2 959 6356 128 13 3 chr12 49136339 49137320 -72120210 + Lx LINE L1 5664 6654 0 2 959 387 68 33 17 chr12 49137340 49137400 -72120130 + ORR1B2 LTR MaLR 23 83 -284 2 959 5671 224 51 39 chr12 49137431 49138837 -72118693 + ORR1B1-int LTR MaLR 18 1451 -58 2 959 2961 147 13 34 chr12 49138837 49139365 -72118165 + Lx2 LINE L1 6478 6994 -3 2 959 5671 224 51 39 chr12 49139365 49139433 -72118097 + ORR1B1-int LTR MaLR 1452 1509 0 2 959 850 198 97 58 chr12 49139433 49139730 -72117800 + ORR1B1 LTR MaLR 1 390 -4 2 959 31220 88 2 2 chr12 49139732 49144486 -72113044 + L1Md_F2 LINE L1 392 5151 -732 2 959 2711 23 2 206 chr12 49144486 49144976 -72112554 + RLTR10 LTR ERVK 1 390 0 2 959 31220 89 1 2 chr12 49144976 49145416 -72112114 + L1Md_F2 LINE L1 5152 5585 -298 2 959 7808 54 12 4 chr12 49145417 49146398 -72111132 + L1Md_F2 LINE L1 5587 6575 -7 2 959 299 259 263 15 chr12 49146451 49146584 -72110946 + ORR1E LTR MaLR 137 302 -57 2 959 272 120 0 20 chr12 49146592 49146643 -72110887 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 959 314 316 30 50 chr12 49146684 49146784 -72110746 - RSINE1 SINE B4 -16 149 52 2 959 303 127 0 0 chr12 49146827 49146890 -72110640 + (A)n Simple_repeat Simple_repeat 1 63 0 2 959 315 302 8 41 chr12 49146906 49147027 -72110503 + MTD LTR MaLR 8 124 -295 2 959 1110 88 0 0 chr12 49147623 49147771 -72109759 - B1_Mus1 SINE Alu 0 148 1 2 959 830 148 103 6 chr12 49148057 49148213 -72109317 - L1_Mus2 LINE L1 -4 6562 6392 2 959 562 316 109 39 chr12 49148560 49148817 -72108713 + MTD LTR MaLR 106 380 -39 2 959 266 233 10 0 chr12 49148856 49148918 -72108612 + ORR1D2-int LTR MaLR 1458 1509 0 2 959 285 329 0 0 chr12 49148918 49148994 -72108536 + ORR1D2 LTR MaLR 1 76 -294 2 959 327 245 168 0 chr12 49149018 49149161 -72108369 + Lx9 LINE L1 7413 7579 -65 2 959 23 0 0 0 chr12 49149175 49149198 -72108332 + AT_rich Low_complexity Low_complexity 1 23 0 2 959 290 316 12 25 chr12 49149217 49149298 -72108232 + ORR1D2 LTR MaLR 99 178 -192 2 119 37645 44 0 2 chr12 49149322 49155525 -72102005 - L1Md_T LINE L1 0 6585 301 2 960 561 293 57 26 chr12 49155525 49155718 -72101812 + ORR1D2 LTR MaLR 172 370 0 2 960 3138 76 5 0 chr12 49155736 49156156 -72101374 - L1_Mus2 LINE L1 -446 6120 5699 2 960 2709 57 0 3 chr12 49156153 49156486 -72101044 + L1_Mus2 LINE L1 6111 6442 -124 2 960 1914 279 48 77 chr12 49156609 49157274 -72100256 - RMER13A LTR ERVK -214 646 1 2 960 837 341 47 0 chr12 49157280 49157579 -72099951 + ORR1D1 LTR MaLR 26 338 -36 2 960 2157 296 28 23 chr12 49157940 49158546 -72098984 + RMER1C Other Other 426 1034 -308 2 960 218 316 30 120 chr12 49158550 49158683 -72098847 - B4A SINE B4 -170 122 2 2 960 500 172 35 0 chr12 49158684 49158771 -72098759 + RMER1C Other Other 1114 1203 -139 2 960 373 181 11 11 chr12 49158788 49158883 -72098647 + CT-rich Low_complexity Low_complexity 3 97 0 2 960 513 246 13 60 chr12 49158888 49159039 -72098491 + RMER1C Other Other 1198 1341 -1 2 960 599 208 168 12 chr12 49159057 49159301 -72098229 - Lx9 LINE L1 0 7644 7363 2 960 1103 229 218 6 chr12 49159270 49159582 -72097948 - Lx9 LINE L1 -961 6683 6306 2 960 1090 289 93 34 chr12 49159709 49160505 -72097025 + Lx7 LINE L1 5405 6244 -1452 2 960 431 325 32 44 chr12 49160486 49160615 -72096915 + Lx7 LINE L1 7108 7234 -239 2 960 351 0 0 0 chr12 49160615 49160654 -72096876 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 960 431 325 32 44 chr12 49160654 49160775 -72096755 + Lx7 LINE L1 7235 7354 -119 2 960 1021 96 7 7 chr12 49162145 49162292 -72095238 - B1_Mm SINE Alu 0 147 1 2 960 882 266 9 0 chr12 49162353 49162567 -72094963 + B3 SINE B2 1 216 0 2 960 267 31 0 0 chr12 49164160 49164192 -72093338 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 960 228 35 0 0 chr12 49164428 49164457 -72093073 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 960 328 308 102 40 chr12 49164657 49165029 -72092501 - L1M2 LINE L1 -862 5281 4887 2 960 336 345 85 38 chr12 49165103 49165444 -72092086 - L1M2 LINE L1 -1391 4752 4396 2 960 751 223 72 5 chr12 49165491 49165698 -72091832 + URR1B DNA MER1_type 5 225 0 2 960 281 289 44 11 chr12 49165745 49165836 -72091694 - ID_B1 SINE B4 -3 221 128 2 960 604 243 189 28 chr12 49166093 49166347 -72091183 - MTD LTR MaLR -124 295 1 2 960 774 314 30 8 chr12 49166352 49166618 -72090912 + Lx8 LINE L1 6891 7162 -311 2 960 1344 234 42 68 chr12 49166626 49167052 -72090478 + Lx9 LINE L1 7103 7517 -127 2 960 229 276 17 25 chr12 49167056 49167175 -72090355 + Lx9 LINE L1 7480 7597 -47 2 960 390 42 0 0 chr12 49167486 49167534 -72089996 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 960 474 65 0 0 chr12 49167535 49167597 -72089933 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 960 21 0 0 0 chr12 49167791 49167812 -72089718 + AT_rich Low_complexity Low_complexity 1 21 0 2 960 282 56 0 0 chr12 49168253 49168289 -72089241 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2 960 192 40 0 0 chr12 49169490 49169515 -72088015 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 960 487 0 32 0 chr12 49169568 49169631 -72087899 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 2 960 1031 279 20 35 chr12 49169633 49169979 -72087551 - Lx7 LINE L1 -377 7319 6979 2 960 774 309 144 53 chr12 49170253 49170289 -72087241 - Lx6 LINE L1 0 7460 7427 2 960 486 33 0 0 chr12 49170289 49170349 -72087181 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 960 774 309 144 53 chr12 49170349 49170462 -72087068 - Lx6 LINE L1 -34 7426 7322 2 960 270 0 0 0 chr12 49170462 49170492 -72087038 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 960 1180 294 156 31 chr12 49170492 49171276 -72086254 - Lx6 LINE L1 -139 7321 6201 2 960 254 66 82 0 chr12 49171315 49171376 -72086154 + (TTTG)n Simple_repeat Simple_repeat 2 67 0 2 960 423 0 0 0 chr12 49171676 49171723 -72085807 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2 960 540 351 70 9 chr12 49171925 49172138 -72085392 + MTE2b LTR MaLR 54 279 -100 2 960 314 331 103 0 chr12 49172140 49172276 -72085254 + MTEb LTR MaLR 219 368 -11 2 960 268 230 66 74 chr12 49172297 49172419 -72085111 + MTEb-int LTR MaLR 17 137 -1443 2 960 619 360 51 48 chr12 49172401 49172545 -72084985 + MTEb-int LTR MaLR 864 1019 -561 2 960 3791 74 18 0 chr12 49172545 49173044 -72084486 + L1_Mus2 LINE L1 6059 6566 0 2 960 619 360 51 48 chr12 49173044 49173234 -72084296 + MTEb-int LTR MaLR 1020 1199 -381 2 960 944 169 0 0 chr12 49173597 49173775 -72083755 + L1_Mur1 LINE L1 4751 4928 -958 2 960 1198 48 0 0 chr12 49173777 49173923 -72083607 - L1_Mus1 LINE L1 -825 5742 5597 2 960 2575 82 0 6 chr12 49173923 49174277 -72083253 + L1_Mus1 LINE L1 6216 6567 0 2 960 2185 143 3 0 chr12 49174286 49174643 -72082887 + L1_Mur1 LINE L1 4925 5282 -604 2 960 23 33 0 0 chr12 49175729 49175759 -72081771 + AT_rich Low_complexity Low_complexity 1 30 0 2 960 417 264 73 13 chr12 49175952 49176102 -72081428 + RMER15 LTR ERVL 404 562 -13 2 960 8040 93 29 6 chr12 49176506 49178786 -72078744 - L1Md_F3 LINE L1 -2 6582 3649 2 960 431 351 62 22 chr12 49178935 49179113 -72078417 + B3A SINE B2 6 190 -8 2 960 7262 116 11 2 chr12 49179510 49180687 -72076843 + L1_Mus4 LINE L1 5445 6630 -6 2 960 23 54 0 0 chr12 49183452 49183489 -72074041 + AT_rich Low_complexity Low_complexity 1 37 0 2 960 246 179 0 0 chr12 49185042 49185098 -72072432 + (CAG)n Simple_repeat Simple_repeat 1 56 0 2 960 210 37 0 0 chr12 49185566 49185593 -72071937 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 960 1022 99 0 0 chr12 49185710 49185852 -72071678 - B1_Mus1 SINE Alu -2 146 5 2 960 415 261 69 36 chr12 49186160 49186464 -72071066 + L1M4c LINE L1 1054 1621 -4682 2 960 1522 211 81 23 chr12 49187737 49188130 -72069400 + MTD LTR MaLR 1 416 -3 2 960 520 292 20 20 chr12 49188671 49188818 -72068712 - RMER13A LTR ERVK -713 147 1 2 960 1724 211 61 39 chr12 49188819 49189277 -72068253 - Lx4B LINE L1 -551 6507 6040 2 960 418 250 60 0 chr12 49189298 49189414 -72068116 - L1_Rod LINE L1 -2318 3529 3407 2 960 27884 106 11 115 chr12 49189415 49196599 -72060931 - L1Md_F2 LINE L1 -3 6579 163 2 960 1221 269 36 38 chr12 49196591 49197062 -72060468 - L1_Rod LINE L1 -2417 3430 2961 2 960 2181 289 30 68 chr12 49197059 49197912 -72059618 - L1_Rod LINE L1 -6345 1263 443 2 960 232 317 65 32 chr12 49197966 49198090 -72059440 - L1_Rod LINE L1 -7044 564 437 2 960 306 296 48 90 chr12 49198145 49198334 -72059196 - L1_Rod LINE L1 -6925 247 67 2 960 22 35 0 0 chr12 49198398 49198427 -72059103 + AT_rich Low_complexity Low_complexity 1 29 0 2 960 2059 207 32 68 chr12 49199531 49200033 -72057497 + RLTR25A LTR ERVK 44 527 -576 2 960 1050 204 77 5 chr12 49200056 49200263 -72057267 + MT2B LTR ERVL 35 256 -345 2 960 290 314 108 0 chr12 49200175 49200277 -72057253 + PB1D9 SINE Alu 6 118 -2 2 960 5542 154 38 27 chr12 49202063 49203918 -72053612 - Lx3B LINE L1 -4 6969 5110 2 960 2619 110 24 12 chr12 49204212 49204625 -72052905 + BGLII LTR ERVK 4 421 0 2 960 352 330 37 32 chr12 49205033 49205221 -72052309 + RLTR15 LTR ERVK 71 259 -100 2 960 322 349 101 71 chr12 49206120 49206388 -72051142 + B4 SINE B4 6 281 -11 2 960 297 257 0 0 chr12 49206575 49206649 -72050881 + Lx9 LINE L1 6883 6956 -688 2 960 700 98 22 15 chr12 49207016 49207151 -72050379 + (TA)n Simple_repeat Simple_repeat 1 136 0 2 960 403 196 60 0 chr12 49207180 49207313 -72050217 + (TCTA)n Simple_repeat Simple_repeat 4 144 0 2 960 688 345 105 20 chr12 49207364 49207716 -72049814 + ORR1C2 LTR MaLR 1 382 -2 2 960 405 0 0 0 chr12 49207722 49207767 -72049763 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 960 378 0 0 0 chr12 49207769 49207811 -72049719 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 960 226 250 49 12 chr12 49207827 49207908 -72049622 + Lx9 LINE L1 7561 7644 0 2 960 243 333 67 50 chr12 49208224 49208344 -72049186 + ID_B1 SINE B4 87 208 -16 2 960 377 355 57 96 chr12 49208314 49208567 -72048963 - Tigger9b DNA MER2_type -189 435 191 2 960 1355 96 0 0 chr12 49208567 49208765 -72048765 - L1_Mus2 LINE L1 -1 6565 6368 2 960 377 355 57 96 chr12 49208765 49208947 -72048583 - Tigger9b DNA MER2_type -434 190 17 2 960 1094 286 17 14 chr12 49209314 49209601 -72047929 - Lx5 LINE L1 -10 7040 6753 2 960 697 203 42 0 chr12 49211097 49211240 -72046290 + B1_Mur4 SINE Alu 2 150 0 2 960 26 0 0 0 chr12 49211277 49211303 -72046227 + AT_rich Low_complexity Low_complexity 1 26 0 2 960 687 336 37 29 chr12 49211351 49211715 -72045815 - Lx9 LINE L1 -269 7375 6876 3 960 653 266 85 25 chr12 49211718 49212000 -72045530 - L1_Rod LINE L1 -241 5606 5308 3 960 28 29 0 0 chr12 49212237 49212272 -72045258 + AT_rich Low_complexity Low_complexity 1 35 0 3 960 616 286 82 21 chr12 49212417 49212976 -72044554 - L1M4 LINE L1 -533 5641 5045 3 960 23 54 0 0 chr12 49213150 49213187 -72044343 + AT_rich Low_complexity Low_complexity 1 37 0 3 960 234 0 0 0 chr12 49214110 49214136 -72043394 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 960 255 79 0 0 chr12 49215229 49215267 -72042263 + (A)n Simple_repeat Simple_repeat 1 38 0 3 960 472 320 170 31 chr12 49215513 49216886 -72040644 + L1M2 LINE L1 3823 5385 -758 3 960 281 355 0 0 chr12 49217142 49217249 -72040281 - Lx9 LINE L1 -451 7193 7087 3 960 204 205 0 0 chr12 49217307 49217346 -72040184 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 960 25 31 0 0 chr12 49217459 49217491 -72040039 + AT_rich Low_complexity Low_complexity 1 32 0 3 960 3154 60 5 0 chr12 49217728 49218126 -72039404 - MTB LTR MaLR 0 400 1 3 960 332 308 96 27 chr12 49218637 49218824 -72038706 + L1M2 LINE L1 2850 3049 -3094 3 960 246 209 58 29 chr12 49218928 49218997 -72038533 - L1M2 LINE L1 -1205 4938 4868 3 960 3554 74 4 16 chr12 49219141 49219633 -72037897 - L1_Mus3 LINE L1 -6 6632 6147 3 960 5888 145 55 19 chr12 49219645 49220746 -72036784 - L1_Mm LINE L1 -2865 3018 1879 3 960 264 164 0 0 chr12 49221039 49221106 -72036424 + T-rich Low_complexity Low_complexity 5 71 0 3 960 588 318 29 0 chr12 49221543 49221713 -72035817 - Lx9 LINE L1 -987 6657 6483 3 960 719 341 48 42 chr12 49222037 49222493 -72035037 + Lx9 LINE L1 6761 7219 -425 3 960 606 51 0 0 chr12 49222627 49222705 -72034825 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 960 1240 239 76 33 chr12 49223757 49224124 -72033406 - ORR1C2 LTR MaLR 0 384 2 3 960 227 305 0 0 chr12 49224664 49224723 -72032807 - MamSINE1 SINE tRNA -141 149 91 3 960 245 273 61 0 chr12 49224744 49224810 -72032720 - tRNA-Ile-ATT tRNA tRNA -3 74 5 3 960 21 0 0 0 chr12 49224895 49224916 -72032614 + AT_rich Low_complexity Low_complexity 1 21 0 3 960 31 26 0 0 chr12 49224935 49224973 -72032557 + AT_rich Low_complexity Low_complexity 1 38 0 3 960 769 146 36 14 chr12 49225754 49225893 -72031637 + RMER19B LTR ERVK 1 142 -595 3 960 6358 111 28 7 chr12 49225893 49227091 -72030439 + Lx3_Mus LINE L1 5394 6611 -398 3 960 3619 159 30 31 chr12 49227093 49227766 -72029764 + RMER19B LTR ERVK 225 896 -6 3 960 245 155 17 0 chr12 49227965 49228023 -72029507 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 3 960 30 27 0 0 chr12 49228639 49228676 -72028854 + AT_rich Low_complexity Low_complexity 1 37 0 3 960 24 85 0 0 chr12 49229995 49230054 -72027476 + AT_rich Low_complexity Low_complexity 1 59 0 3 960 7056 86 12 1 chr12 49230968 49232340 -72025190 - L1_Mus1 LINE L1 -1 6566 5183 3 960 5164 118 34 11 chr12 49232334 49233273 -72024257 - L1VL2 LINE L1 -1786 1829 890 3 960 1260 27 0 0 chr12 49233273 49233420 -72024110 - B1_Mm SINE Alu 0 147 1 3 960 4595 108 14 45 chr12 49233420 49233987 -72023543 - L1VL2 LINE L1 -5446 889 314 3 960 1597 211 72 5 chr12 49234012 49234403 -72023127 + MTC LTR MaLR 1 417 -4 3 960 32 57 0 0 chr12 49234554 49234607 -72022923 + AT_rich Low_complexity Low_complexity 1 53 0 3 960 338 57 0 19 chr12 49234909 49234963 -72022567 + (TATG)n Simple_repeat Simple_repeat 4 56 0 3 960 1441 229 12 6 chr12 49234996 49235316 -72022214 + Lx2B LINE L1 6394 6715 -285 3 960 1404 118 9 5 chr12 49235318 49235531 -72021999 - MTB LTR MaLR -2 398 185 3 960 759 51 0 115 chr12 49235533 49235733 -72021797 + CT-rich Low_complexity Low_complexity 1 177 0 3 960 704 120 35 14 chr12 49235781 49235925 -72021605 + T-rich Low_complexity Low_complexity 5 151 0 3 960 294 143 0 0 chr12 49235920 49235969 -72021561 + (TCTCCC)n Simple_repeat Simple_repeat 4 52 0 3 960 1884 113 7 0 chr12 49235971 49236246 -72021284 - L1_Mus3 LINE L1 -6 6632 6356 3 960 4190 103 8 3 chr12 49236394 49237005 -72020525 - L1_Mus3 LINE L1 -1 6637 6024 3 960 1135 134 11 0 chr12 49237005 49237192 -72020338 - MTB LTR MaLR -211 189 1 3 960 6477 128 4 68 chr12 49237192 49238365 -72019165 - MTB-int LTR MaLR 0 1098 1 3 960 1398 98 23 9 chr12 49238365 49238581 -72018949 - MTB LTR MaLR 0 400 182 3 960 420 82 0 0 chr12 49238581 49238642 -72018888 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 3 960 946 97 0 0 chr12 49238659 49238793 -72018737 - B1_Mm SINE Alu -9 138 5 3 960 771 185 33 0 chr12 49238796 49238947 -72018583 - MTB LTR MaLR -202 205 50 3 960 216 97 0 0 chr12 49238949 49238980 -72018550 + (T)n Simple_repeat Simple_repeat 1 31 0 3 960 10025 88 9 7 chr12 49239150 49241289 -72016241 - L1_Mus2 LINE L1 -1 6565 4426 3 960 321 175 30 45 chr12 49241289 49241355 -72016175 - MTB LTR MaLR -329 67 3 3 960 743 257 132 16 chr12 49241358 49241615 -72015915 + Lx2B LINE L1 6712 6998 -2 3 960 486 326 23 0 chr12 49241786 49241915 -72015615 - B3A SINE B2 -64 134 3 3 960 279 0 0 0 chr12 49243667 49243698 -72013832 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 960 347 350 91 5 chr12 49243930 49244128 -72013402 - L3b LINE CR1 -258 224 10 3 960 22 35 0 0 chr12 49244394 49244423 -72013107 + AT_rich Low_complexity Low_complexity 1 29 0 3 960 2911 284 184 37 chr12 49245053 49245627 -72011903 - Lx6 LINE L1 0 7460 6770 3 960 1346 227 49 41 chr12 49245627 49246017 -72011513 + ORR1B1 LTR MaLR 2 394 0 3 960 2911 280 67 59 chr12 49246017 49246718 -72010812 - Lx6 LINE L1 -691 6769 6095 3 960 26 0 0 0 chr12 49246879 49246905 -72010625 + AT_rich Low_complexity Low_complexity 1 26 0 3 960 307 225 7 68 chr12 49247050 49247175 -72010355 + A-rich Low_complexity Low_complexity 5 123 0 3 960 378 0 0 0 chr12 49247175 49247217 -72010313 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 960 307 225 7 68 chr12 49247217 49247239 -72010291 + A-rich Low_complexity Low_complexity 124 143 0 3 960 4411 257 82 45 chr12 49247408 49248219 -72009311 - Lx6 LINE L1 -349 7111 6240 3 960 261 0 0 0 chr12 49248219 49248248 -72009282 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 960 1501 159 3 62 chr12 49248251 49248511 -72009019 + Lx2 LINE L1 6707 6954 -43 3 960 3485 18 2 0 chr12 49248511 49248906 -72008624 + MTA_Mm LTR MaLR 1 396 0 3 960 9077 37 2 1 chr12 49248906 49250003 -72007527 + MTA_Mm-int LTR MaLR 1 1098 0 3 960 3398 30 2 0 chr12 49250003 49250398 -72007132 + MTA_Mm LTR MaLR 1 396 0 3 960 1501 159 3 62 chr12 49250398 49250444 -72007086 + Lx2 LINE L1 6955 6995 -2 3 960 7412 252 86 42 chr12 49250444 49250838 -72006692 - Lx6 LINE L1 -1221 6239 5833 3 960 293 0 0 26 chr12 49250838 49250876 -72006654 + (TTG)n Simple_repeat Simple_repeat 2 38 0 3 960 7412 209 118 15 chr12 49250876 49251992 -72005538 - Lx6 LINE L1 -48 5832 4637 3 960 186 43 0 0 chr12 49251992 49252015 -72005515 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 960 7412 209 118 15 chr12 49252015 49252942 -72004588 - Lx6 LINE L1 -1244 4636 3572 3 960 342 206 18 97 chr12 49253438 49253526 -72004004 + RCHARR1 DNA MER1_type 671 755 -219 3 960 661 235 0 32 chr12 49253526 49253680 -72003850 + B1_Mur1 SINE Alu 1 149 0 3 960 342 206 18 97 chr12 49253680 49253704 -72003826 + RCHARR1 DNA MER1_type 756 774 -200 3 960 192 77 0 0 chr12 49255213 49255239 -72002291 + (T)n Simple_repeat Simple_repeat 1 26 0 3 960 2910 177 86 34 chr12 49256256 49256746 -72000784 - RMER6C LTR ERVK -2 688 154 3 960 3830 148 64 7 chr12 49256746 49257419 -72000111 + Lx2 LINE L1 6286 6996 -1 3 960 2910 177 86 34 chr12 49257419 49257432 -72000098 - RMER6C LTR ERVK -537 153 143 3 960 249 33 0 0 chr12 49257432 49257462 -72000068 + (CAA)n Simple_repeat Simple_repeat 3 32 0 3 960 2910 177 86 34 chr12 49257462 49257611 -71999919 - RMER6C LTR ERVK -548 142 1 3 960 450 284 102 54 chr12 49257663 49257849 -71999681 - B3 SINE B2 0 195 1 3 960 231 345 66 40 chr12 49257914 49258065 -71999465 + L2a LINE L2 3270 3424 -2 3 960 37 0 0 0 chr12 49258168 49258205 -71999325 + AT_rich Low_complexity Low_complexity 1 37 0 3 960 237 33 0 0 chr12 49258854 49258884 -71998646 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 960 28 0 0 0 chr12 49259664 49259692 -71997838 + AT_rich Low_complexity Low_complexity 1 28 0 3 960 4324 55 2 2 chr12 49259861 49260407 -71997123 + L1Md_F2 LINE L1 6037 6582 0 3 960 205 152 0 0 chr12 49260696 49260729 -71996801 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 960 24 32 0 0 chr12 49260767 49260798 -71996732 + AT_rich Low_complexity Low_complexity 1 31 0 3 960 24 0 0 0 chr12 49261499 49261523 -71996007 + AT_rich Low_complexity Low_complexity 1 24 0 3 960 21 0 0 0 chr12 49261794 49261815 -71995715 + AT_rich Low_complexity Low_complexity 1 21 0 3 960 7672 88 5 4 chr12 49261995 49263151 -71994379 - L1_Mus3 LINE L1 -3 6635 5479 3 960 310 337 22 0 chr12 49263845 49263937 -71993593 - PB1D10 SINE Alu -1 116 23 3 960 333 0 0 0 chr12 49263944 49263981 -71993549 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 960 24 53 0 0 chr12 49264093 49264131 -71993399 + AT_rich Low_complexity Low_complexity 1 38 0 3 960 387 0 0 0 chr12 49264484 49264527 -71993003 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 960 189 0 0 0 chr12 49264784 49264805 -71992725 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 960 240 157 98 25 chr12 49264846 49265009 -71992521 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 3 960 267 199 52 37 chr12 49265006 49265142 -71992388 + (TTATA)n Simple_repeat Simple_repeat 5 142 0 3 960 223 173 6 105 chr12 49265086 49265151 -71992379 + (TTA)n Simple_repeat Simple_repeat 3 62 0 3 960 3400 30 2 0 chr12 49265151 49265546 -71991984 - MTA_Mm LTR MaLR 0 396 1 3 960 9339 29 2 0 chr12 49265546 49266642 -71990888 - MTA_Mm-int LTR MaLR 0 1098 1 3 960 3376 30 2 0 chr12 49266642 49267037 -71990493 - MTA_Mm LTR MaLR 0 396 1 3 960 223 173 6 105 chr12 49267037 49267150 -71990380 + (TTA)n Simple_repeat Simple_repeat 1 101 0 3 960 273 253 16 54 chr12 49267149 49267333 -71990197 + (TTATA)n Simple_repeat Simple_repeat 4 180 0 3 960 32 91 0 0 chr12 49267333 49267421 -71990109 + AT_rich Low_complexity Low_complexity 1 88 0 3 960 260 336 54 8 chr12 49268165 49268294 -71989236 - B1F SINE Alu -11 138 4 3 960 1731 139 0 23 chr12 49268438 49268740 -71988790 - Lx2A1 LINE L1 -1 7007 6713 3 960 273 98 0 0 chr12 49269357 49269398 -71988132 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 960 7950 139 18 5 chr12 49269403 49270679 -71986851 - Lx3B LINE L1 -2 6971 5679 3 960 317 25 0 0 chr12 49270678 49270718 -71986812 + L1_Mur1 LINE L1 3386 3425 -2461 3 960 30 69 0 0 chr12 49270815 49270873 -71986657 + AT_rich Low_complexity Low_complexity 1 58 0 3 960 495 0 0 0 chr12 49270899 49270954 -71986576 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3 960 24 0 0 0 chr12 49271930 49271954 -71985576 + AT_rich Low_complexity Low_complexity 1 24 0 3 960 240 224 0 0 chr12 49272367 49272434 -71985096 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 960 1191 48 0 0 chr12 49273701 49273848 -71983682 + B1_Mus2 SINE Alu 1 147 0 4 960 252 86 0 0 chr12 49273848 49273883 -71983647 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 4 960 732 278 72 0 chr12 49274532 49274726 -71982804 + ORR1D2 LTR MaLR 3 210 -160 4 960 784 198 62 0 chr12 49274797 49274959 -71982571 - RMER2 LTR ERV1 0 567 396 4 960 299 261 80 61 chr12 49275239 49275402 -71982128 + RNLTR23 LTR ERVK 477 642 0 4 960 1744 140 0 0 chr12 49275402 49275660 -71981870 - RMER2 LTR ERV1 -151 416 159 4 960 339 118 0 0 chr12 49275659 49275710 -71981820 - RMER2 LTR ERV1 -516 51 1 4 960 192 152 0 0 chr12 49276145 49276178 -71981352 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 960 220 239 0 0 chr12 49276314 49276360 -71981170 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 960 3279 82 16 0 chr12 49276697 49277146 -71980384 - L1_Mus3 LINE L1 -7 6631 6176 4 960 3804 117 11 95 chr12 49277180 49277980 -71979550 - RMER17A LTR ERVK -15 736 4 4 960 734 97 48 0 chr12 49277984 49278087 -71979443 - L1_Mus3 LINE L1 -457 6181 6074 4 960 2871 135 40 22 chr12 49278126 49278625 -71978905 - Lx2 LINE L1 -1 6996 6489 4 960 15149 76 0 3 chr12 49278624 49281337 -71976193 - L1Md_F2 LINE L1 -12 6570 3866 4 960 249 164 32 32 chr12 49281334 49281397 -71976133 - Lx2 LINE L1 -533 6467 6405 4 960 325 378 96 12 chr12 49281419 49281668 -71975862 - MLT1C LTR MaLR -196 271 2 4 960 1075 104 6 0 chr12 49281786 49281950 -71975580 - L1_Mus1 LINE L1 -1 6566 6402 4 960 286 360 92 26 chr12 49281987 49282215 -71975315 - MLT-int LTR MaLR -184 1551 1309 4 960 295 346 93 46 chr12 49282832 49283026 -71974504 - MLT1C LTR MaLR -206 261 59 4 14 432 237 32 0 chr12 49283070 49283163 -71974367 - MLT1C-int LTR MaLR -646 725 630 4 961 238 302 149 12 chr12 49283184 49283345 -71974185 - MLT1C-int LTR MaLR -779 592 410 4 961 331 322 59 8 chr12 49283403 49283522 -71974008 - Tigger5 DNA MER2_type -2207 199 75 4 961 1050 71 0 0 chr12 49283569 49283709 -71973821 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 4 961 7931 57 4 5 chr12 49283770 49285295 -71972235 - L1Md_F2 LINE L1 -1 6581 5056 4 961 279 0 0 0 chr12 49285416 49285447 -71972083 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 961 327 375 82 47 chr12 49285548 49285691 -71971839 - MLT1C LTR MaLR 0 467 320 4 961 594 79 0 0 chr12 49285691 49285780 -71971750 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 961 327 375 82 47 chr12 49285780 49286039 -71971491 - MLT1C LTR MaLR -148 319 51 4 961 1731 224 131 65 chr12 49286119 49286941 -71970589 + RMER6C LTR ERVK 1 720 0 4 961 311 269 47 28 chr12 49287024 49287131 -71970399 + MT2A LTR ERVL 3 111 -422 4 961 29 28 0 0 chr12 49287471 49287507 -71970023 + AT_rich Low_complexity Low_complexity 1 36 0 4 961 1287 267 97 27 chr12 49287808 49288162 -71969368 + MT2A LTR ERVL 102 468 -65 4 961 486 75 0 0 chr12 49288162 49288229 -71969301 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 961 1287 267 97 27 chr12 49288229 49288278 -71969252 + MT2A LTR ERVL 469 533 0 4 961 21 0 0 0 chr12 49288688 49288709 -71968821 + AT_rich Low_complexity Low_complexity 1 21 0 4 961 23 54 0 0 chr12 49288837 49288874 -71968656 + AT_rich Low_complexity Low_complexity 1 37 0 4 961 212 318 0 15 chr12 49289313 49289380 -71968150 - PB1D10 SINE Alu -31 86 21 4 961 4765 148 5 2 chr12 49289582 49290382 -71967148 - L1_Mus3 LINE L1 -795 5088 4287 4 961 4336 130 18 13 chr12 49290379 49291202 -71966328 + L1_Mus3 LINE L1 5089 5926 -712 4 961 1847 44 0 0 chr12 49291191 49291417 -71966113 + L1Md_F2 LINE L1 6334 6559 -23 4 961 1555 239 124 51 chr12 49291419 49291966 -71965564 + RMER13B LTR ERVK 322 908 0 4 961 1532 246 16 136 chr12 49292097 49292147 -71965383 - Lx6 LINE L1 0 7460 7421 4 961 850 31 30 8 chr12 49292147 49292278 -71965252 + (TTTTG)n Simple_repeat Simple_repeat 2 135 0 4 961 1532 246 16 136 chr12 49292278 49292292 -71965238 - Lx6 LINE L1 -40 7420 7420 4 961 1107 45 0 0 chr12 49292292 49292426 -71965104 - B1_Mus1 SINE Alu -14 134 1 4 961 1532 246 16 136 chr12 49292426 49292910 -71964620 - Lx6 LINE L1 -40 7420 6977 4 961 449 174 0 117 chr12 49292910 49293021 -71964509 + Lx6 LINE L1 6857 6954 -506 4 961 744 326 27 31 chr12 49293023 49293612 -71963918 - L1_Mur3 LINE L1 -887 4993 4407 4 961 397 209 36 9 chr12 49293677 49293788 -71963742 + Lx2A1 LINE L1 6889 7002 -6 4 961 509 0 0 16 chr12 49293927 49293989 -71963541 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 961 735 324 74 32 chr12 49294063 49294372 -71963158 - MTE2a LTR MaLR 0 379 58 4 961 520 252 8 25 chr12 49294403 49294525 -71963005 + B1_Mur4 SINE Alu 31 150 0 4 961 273 57 0 0 chr12 49294533 49294568 -71962962 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 4 961 1004 24 8 0 chr12 49295184 49295311 -71962219 - B1_Mus1 SINE Alu -1 147 20 4 961 1350 230 98 44 chr12 49295309 49295383 -71962147 - RLTR12A LTR ERVK -13 555 469 4 961 414 0 0 0 chr12 49295383 49295429 -71962101 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 961 1350 230 98 44 chr12 49295429 49295741 -71961789 - RLTR12A LTR ERVK -100 468 149 4 961 359 167 43 7 chr12 49295811 49295950 -71961580 + (TA)n Simple_repeat Simple_repeat 2 145 0 4 961 640 327 42 19 chr12 49296323 49296918 -71960612 + L1M2 LINE L1 4054 4662 -1481 4 961 732 342 82 19 chr12 49297077 49297455 -71960075 + Lx8 LINE L1 7001 7402 -71 4 961 350 207 99 0 chr12 49297622 49297733 -71959797 - Lx9 LINE L1 -2 7642 7521 4 961 855 29 0 0 chr12 49297734 49297836 -71959694 + (TG)n Simple_repeat Simple_repeat 2 103 0 4 961 2738 228 43 35 chr12 49297836 49299064 -71958466 - L1_Mur2 LINE L1 -3836 2050 791 4 961 181 109 21 21 chr12 49299550 49299597 -71957933 + T-rich Low_complexity Low_complexity 1 47 0 4 961 27 21 0 41 chr12 49300830 49300861 -71956669 + AT_rich Low_complexity Low_complexity 1 31 0 4 961 5709 141 19 5 chr12 49300861 49301809 -71955721 + Lx3C LINE L1 6013 6973 -3 4 961 27 21 0 41 chr12 49301809 49301826 -71955704 + AT_rich Low_complexity Low_complexity 1 16 0 4 961 25 0 0 0 chr12 49302069 49302094 -71955436 + AT_rich Low_complexity Low_complexity 1 25 0 4 961 872 243 209 47 chr12 49302496 49302902 -71954628 - RMER6D LTR ERVK -246 474 3 4 961 254 321 9 0 chr12 49303299 49303411 -71954119 - L1_Mur3 LINE L1 -517 5363 5251 4 961 23 0 0 0 chr12 49304635 49304658 -71952872 + AT_rich Low_complexity Low_complexity 1 23 0 4 961 1205 42 6 57 chr12 49304831 49305008 -71952522 + L1Md_F3 LINE L1 6401 6568 -16 4 961 1673 235 27 19 chr12 49305223 49305592 -71951938 - RLTR14 LTR ERV1 0 382 11 4 961 300 352 40 35 chr12 49305627 49305827 -71951703 - Lx8 LINE L1 -273 7200 7000 4 961 1892 224 72 2 chr12 49305850 49306253 -71951277 - Lx4A LINE L1 0 7058 6628 4 961 1619 162 66 0 chr12 49306235 49306537 -71950993 + Lx4A LINE L1 6284 6605 -453 4 961 1731 159 81 14 chr12 49306559 49306904 -71950626 - Lx2 LINE L1 -6 6991 6624 4 961 838 298 86 33 chr12 49306883 49307278 -71950252 - Lx8 LINE L1 -458 7015 6600 4 961 25 0 0 0 chr12 49307586 49307611 -71949919 + AT_rich Low_complexity Low_complexity 1 25 0 4 961 264 30 0 0 chr12 49308985 49309018 -71948512 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 961 5042 134 15 1 chr12 49310678 49311467 -71946063 - Lx2 LINE L1 -495 6502 5703 4 961 2154 130 76 72 chr12 49312138 49312612 -71944918 - RLTR44C LTR ERVK -26 476 1 4 961 5704 119 3 8 chr12 49312612 49314050 -71943480 + L1_Mus3 LINE L1 4944 6371 -267 4 961 227 276 19 58 chr12 49314254 49314358 -71943172 - LTRIS5 LTR ERV1 -108 339 240 4 961 842 119 0 7 chr12 49314626 49314770 -71942760 + (TAAA)n Simple_repeat Simple_repeat 2 144 0 4 961 487 280 52 15 chr12 49316111 49316245 -71941285 + B1_Mur2 SINE Alu 6 144 -5 4 961 603 0 0 0 chr12 49316409 49316476 -71941054 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 961 273 29 0 0 chr12 49316476 49316509 -71941021 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 961 381 43 0 0 chr12 49316983 49317030 -71940500 + (TAA)n Simple_repeat Simple_repeat 1 47 0 4 961 573 276 60 12 chr12 49318190 49318401 -71939129 + Lx8 LINE L1 5602 5839 -41 4 961 198 143 0 0 chr12 49318454 49318489 -71939041 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 961 1273 92 11 0 chr12 49318588 49318772 -71938758 - L1_Mus2 LINE L1 -1 6565 6380 4 961 1135 251 140 23 chr12 49318846 49319238 -71938292 - RMER4B LTR ERVK -144 441 4 4 961 1447 321 136 32 chr12 49319242 49320296 -71937234 + Lx8 LINE L1 5971 7133 -340 4 961 4137 132 98 8 chr12 49320638 49321031 -71936499 - RMER17D2 LTR ERVK 0 809 372 4 961 1003 38 8 8 chr12 49321031 49321164 -71936366 + (GGAGA)n Simple_repeat Simple_repeat 2 134 0 4 961 4137 132 98 8 chr12 49321164 49321512 -71936018 - RMER17D2 LTR ERVK -438 371 2 4 961 904 52 0 0 chr12 49322236 49322352 -71935178 - B1_Mus1 SINE Alu 0 148 33 4 961 425 225 54 61 chr12 49322352 49322381 -71935149 - ID_B1 SINE B4 0 222 79 4 961 844 302 36 21 chr12 49322679 49322960 -71934570 + B4 SINE B4 2 286 -6 4 961 201 74 0 0 chr12 49323757 49323784 -71933746 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 961 21 0 0 0 chr12 49327227 49327248 -71930282 + AT_rich Low_complexity Low_complexity 1 21 0 4 961 24 67 0 0 chr12 49327846 49327891 -71929639 + AT_rich Low_complexity Low_complexity 1 45 0 4 961 200 316 111 15 chr12 49327906 49328041 -71929489 + L3b LINE CR1 216 363 -119 4 961 526 264 79 9 chr12 49328392 49328606 -71928924 + MER2 DNA MER2_type 59 287 -58 4 961 725 354 89 11 chr12 49329822 49330285 -71927245 + Lx8 LINE L1 6747 7245 -228 4 961 1618 204 26 77 chr12 49330296 49330684 -71926846 - ORR1C1 LTR MaLR -5 373 6 4 961 376 307 109 34 chr12 49330933 49331172 -71926358 - MLT1B LTR MaLR -125 265 9 4 961 4141 76 25 14 chr12 49331735 49332293 -71925237 + LTRIS2 LTR ERV1 1 564 0 4 961 1817 269 146 68 chr12 49332507 49333225 -71924305 + MTD-int LTR MaLR 298 1084 -174 4 961 525 306 0 7 chr12 49333225 49333373 -71924157 - B1_Mur1 SINE Alu 0 149 3 4 961 1817 269 146 68 chr12 49333373 49333544 -71923986 + MTD-int LTR MaLR 1085 1256 -2 4 961 499 200 114 24 chr12 49333551 49333674 -71923856 + MTD LTR MaLR 6 139 -280 4 961 306 0 0 0 chr12 49333730 49333764 -71923766 + (T)n Simple_repeat Simple_repeat 1 34 0 4 961 847 74 2 2 chr12 49333764 49333892 -71923638 - B1_Mus2 SINE Alu 0 149 22 4 961 615 192 37 30 chr12 49333926 49334060 -71923470 - ORR1B2 LTR MaLR -182 185 51 4 961 729 183 0 21 chr12 49334041 49334186 -71923344 - ORR1B2-int LTR MaLR -185 1324 1183 4 961 3265 211 159 9 chr12 49334171 49335034 -71922496 - ORR1B2-int LTR MaLR -517 992 1 4 961 1419 221 108 12 chr12 49335034 49335088 -71922442 - ORR1B2 LTR MaLR 0 367 313 4 961 866 39 31 8 chr12 49335088 49335218 -71922312 + L1Md_F3 LINE L1 6450 6582 -2 4 961 1419 221 108 12 chr12 49335218 49335498 -71922032 - ORR1B2 LTR MaLR -55 312 2 4 961 2240 193 29 27 chr12 49336008 49336534 -71920996 - RLTR11A2 LTR ERVK 0 527 1 4 961 27 49 0 0 chr12 49336891 49336932 -71920598 + AT_rich Low_complexity Low_complexity 1 41 0 4 961 334 381 32 32 chr12 49337037 49337224 -71920306 - B4A SINE B4 -105 187 1 5 961 21 0 0 0 chr12 49337557 49337578 -71919952 + AT_rich Low_complexity Low_complexity 1 21 0 5 961 283 163 0 0 chr12 49337715 49337764 -71919766 + B1_Mur4 SINE Alu 102 150 0 5 961 1520 125 149 0 chr12 49337960 49338241 -71919289 - IAPEY2_LTR LTR ERVK 0 357 35 5 961 719 299 27 147 chr12 49338328 49338736 -71918794 - MTE2b LTR MaLR -14 365 7 5 961 252 86 0 0 chr12 49338926 49338961 -71918569 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 5 961 239 297 9 9 chr12 49338975 49339087 -71918443 + (TA)n Simple_repeat Simple_repeat 1 112 0 5 961 315 0 0 0 chr12 49339090 49339125 -71918405 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 961 324 130 0 0 chr12 49340477 49340546 -71916984 + (A)n Simple_repeat Simple_repeat 1 69 0 5 961 15825 72 4 6 chr12 49341016 49343814 -71913716 - L1Md_F2 LINE L1 0 6582 3786 5 961 406 300 63 29 chr12 49343869 49344044 -71913486 - Lx9 LINE L1 -258 7386 7206 5 961 310 303 71 41 chr12 49344217 49344413 -71913117 - Lx9 LINE L1 -1595 6049 5848 5 961 302 220 42 42 chr12 49344738 49344833 -71912697 + RNLTR23 LTR ERVK 522 616 -26 5 961 1529 247 35 49 chr12 49344852 49345393 -71912137 - Lx9 LINE L1 -40 5807 5308 5 961 42 0 0 0 chr12 49345649 49345691 -71911839 + AT_rich Low_complexity Low_complexity 1 42 0 5 961 8390 98 16 6 chr12 49345691 49346906 -71910624 - Lx3_Mus LINE L1 0 7009 5783 5 961 37330 46 0 13 chr12 49346906 49353226 -71904304 - L1Md_T LINE L1 -2 6583 250 5 961 650 67 0 0 chr12 49353226 49353316 -71904214 + L1_Mm LINE L1 2056 2145 -3738 5 961 3826 102 6 2 chr12 49353314 49353854 -71903676 - L1_Mur1 LINE L1 -87 5799 5258 5 961 228 275 0 14 chr12 49353852 49353922 -71903608 - Lx9 LINE L1 -737 5110 5042 5 961 332 268 82 100 chr12 49353988 49354307 -71903223 - Lx9 LINE L1 -1429 4418 4106 5 961 186 43 0 0 chr12 49354312 49354335 -71903195 + (TCC)n Simple_repeat Simple_repeat 1 23 0 5 961 753 271 86 88 chr12 49354335 49354925 -71902605 - Lx9 LINE L1 -1689 4158 3570 5 961 1242 289 41 37 chr12 49354994 49355648 -71901882 - Lx9 LINE L1 -2489 3358 2702 5 961 18548 93 2 6 chr12 49355651 49359250 -71898280 + L1Md_F2 LINE L1 273 3858 -2025 5 961 7322 68 1 2 chr12 49359243 49360199 -71897331 + L1Md_F2 LINE L1 4632 5586 -297 5 961 8012 51 0 0 chr12 49360199 49361183 -71896347 + L1Md_F2 LINE L1 5587 6570 -12 5 961 271 32 0 0 chr12 49361217 49361248 -71896282 + L1Md_F2 LINE L1 6358 6388 -194 5 961 320 153 57 67 chr12 49361250 49361355 -71896175 - Lx9 LINE L1 -3166 2681 2578 5 961 3306 240 88 56 chr12 49361380 49362182 -71895348 - Lx9 LINE L1 -3234 2613 1791 5 961 204 40 0 0 chr12 49362182 49362207 -71895323 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 5 961 3306 240 88 56 chr12 49362207 49362397 -71895133 - Lx9 LINE L1 -4057 1790 1629 5 961 633 38 0 0 chr12 49362397 49362477 -71895053 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 961 3306 245 97 42 chr12 49362477 49363016 -71894514 - Lx9 LINE L1 -4219 1628 1011 5 961 271 170 33 43 chr12 49363017 49363109 -71894421 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 961 261 344 26 31 chr12 49363128 49363320 -71894210 - Lx9 LINE L1 -6680 928 738 5 961 4454 132 20 17 chr12 49363602 49364337 -71893193 + Lx LINE L1 5587 6639 -411 5 961 234 289 16 0 chr12 49364516 49364592 -71892938 - MTEa LTR MaLR -12 367 291 5 961 298 247 14 0 chr12 49366115 49366188 -71891342 + Lx7 LINE L1 7170 7243 -453 5 961 1079 79 0 0 chr12 49366219 49366358 -71891172 - B1_Mus2 SINE Alu -8 139 1 5 961 206 136 23 0 chr12 49366374 49366418 -71891112 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 961 5409 134 47 3 chr12 49366754 49367648 -71889882 - Lx3C LINE L1 -457 6519 5587 5 961 1478 107 4 53 chr12 49367706 49367720 -71889810 - L1Md_F2 LINE L1 -11 6571 6560 5 961 264 91 0 0 chr12 49367720 49367764 -71889766 + (ATTG)n Simple_repeat Simple_repeat 1 44 0 5 961 32675 90 16 6 chr12 49367764 49373968 -71883562 - L1Md_F2 LINE L1 -23 6559 286 5 961 21 0 0 0 chr12 49373992 49374013 -71883517 + AT_rich Low_complexity Low_complexity 1 21 0 5 961 372 285 21 28 chr12 49374569 49374710 -71882820 + B1F2 SINE Alu 3 142 -7 5 961 577 256 23 8 chr12 49374791 49374921 -71882609 + B3 SINE B2 81 212 -4 5 961 937 69 77 0 chr12 49374970 49375095 -71882435 + B1_Mus1 SINE Alu 6 140 -8 5 961 207 0 0 0 chr12 49375095 49375118 -71882412 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 961 2776 47 18 0 chr12 49376966 49377306 -71880224 + ORR1A1 LTR MaLR 1 346 0 5 961 3153 175 88 8 chr12 49378074 49378406 -71879124 + RMER6C LTR ERVK 5 370 -320 5 961 459 0 0 0 chr12 49378406 49378457 -71879073 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 961 3153 175 88 8 chr12 49378457 49378759 -71878771 + RMER6C LTR ERVK 371 690 0 5 961 1479 76 10 0 chr12 49378860 49379057 -71878473 - L1Md_F2 LINE L1 -450 6132 5934 5 961 1818 87 8 12 chr12 49379057 49379312 -71878218 + L1_Mus1 LINE L1 6314 6567 0 5 961 320 276 67 25 chr12 49379471 49379590 -71877940 + RLTR42-int LTR ERVK 4253 4376 -1146 5 961 201 188 219 0 chr12 49379944 49380008 -71877522 - L4 LINE RTE -290 1739 1662 5 961 1985 50 0 0 chr12 49380051 49380292 -71877238 + L1Md_F2 LINE L1 5346 5586 -297 5 961 7961 49 7 1 chr12 49380292 49381279 -71876251 + L1Md_F2 LINE L1 5587 6579 -3 5 961 300 267 0 0 chr12 49382486 49382561 -71874969 + Lx9 LINE L1 6850 6924 -720 5 961 561 260 146 48 chr12 49382577 49382783 -71874747 - Lx5 LINE L1 -3 7047 6822 5 961 1478 195 8 0 chr12 49382780 49383047 -71874483 - Lx4B LINE L1 -466 6592 6324 5 961 1604 187 123 3 chr12 49383046 49383427 -71874103 - L1_Mur2 LINE L1 -638 5239 4813 5 961 565 290 151 108 chr12 49383515 49383859 -71873671 + MTD LTR MaLR 1 359 -20 5 961 497 246 67 10 chr12 49383928 49384121 -71873409 - L1MDa LINE L1 -4694 1939 1736 5 961 237 83 0 0 chr12 49384126 49384162 -71873368 + (TTGTG)n Simple_repeat Simple_repeat 5 40 0 5 961 585 0 0 0 chr12 49384265 49384330 -71873200 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 961 270 0 0 0 chr12 49384330 49384359 -71873171 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 961 183 204 0 0 chr12 49384360 49384414 -71873116 + CT-rich Low_complexity Low_complexity 2 55 0 5 961 267 140 0 0 chr12 49386332 49386382 -71871148 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 5 961 321 47 0 0 chr12 49386384 49386427 -71871103 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 961 220 53 26 26 chr12 49386855 49386894 -71870636 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 961 495 336 0 0 chr12 49386910 49387041 -71870489 - RMER1C Other Other -722 620 490 5 961 378 139 0 0 chr12 49387222 49387308 -71870222 + (GA)n Simple_repeat Simple_repeat 2 87 0 5 961 243 0 0 0 chr12 49387310 49387337 -71870193 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 961 917 295 35 14 chr12 49387370 49387659 -71869871 + Lx9 LINE L1 7073 7367 -277 5 961 230 0 33 0 chr12 49387666 49387696 -71869834 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 961 313 189 123 0 chr12 49387698 49387804 -71869726 + Lx9 LINE L1 7519 7637 -7 5 961 24 0 0 0 chr12 49388025 49388049 -71869481 + AT_rich Low_complexity Low_complexity 1 24 0 5 961 26 0 0 0 chr12 49388645 49388671 -71868859 + AT_rich Low_complexity Low_complexity 1 26 0 5 961 1818 144 32 64 chr12 49389362 49389704 -71867826 - RLTR23 LTR ERV1 -3 427 97 5 961 357 250 270 40 chr12 49389723 49389923 -71867607 - Lx6 LINE L1 -477 6983 6738 5 961 777 265 70 107 chr12 49389939 49390239 -71867291 + Lx6 LINE L1 7106 7394 -66 5 961 315 185 0 0 chr12 49390408 49390500 -71867030 + CT-rich Low_complexity Low_complexity 1 92 0 5 961 448 140 11 11 chr12 49391905 49391999 -71865531 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 961 463 287 111 69 chr12 49392115 49392377 -71865153 - MLT1C LTR MaLR -7 460 188 5 961 38 22 0 0 chr12 49392558 49392603 -71864927 + AT_rich Low_complexity Low_complexity 1 45 0 5 961 239 382 106 0 chr12 49392656 49392779 -71864751 - MamRep605 Unknown Unknown -430 446 311 5 961 227 345 0 0 chr12 49393523 49393607 -71863923 - Lx6 LINE L1 -377 7083 7000 5 961 1345 207 59 17 chr12 49393801 49394091 -71863439 - Lx6 LINE L1 -573 6887 6586 5 961 1482 243 92 97 chr12 49394094 49394704 -71862826 - Lx6 LINE L1 -1250 6210 5604 5 961 1324 290 50 19 chr12 49394700 49395079 -71862451 + Lx6 LINE L1 6890 7280 -180 5 961 233 319 26 53 chr12 49395198 49395350 -71862180 + L1M2 LINE L1 2611 2758 -3385 5 961 285 29 0 0 chr12 49395388 49395422 -71862108 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 5 961 706 237 77 26 chr12 49395468 49395702 -71861828 + Lx7 LINE L1 7447 7692 -4 5 961 354 272 140 43 chr12 49395713 49395970 -71861560 + L1M2 LINE L1 2850 3131 -3012 5 961 1203 127 0 0 chr12 49396087 49396268 -71861262 + MT2C_Mm LTR ERVL 1 181 -294 5 961 7813 90 2 6 chr12 49396269 49397369 -71860161 - L1_Mm LINE L1 -925 4958 3863 5 961 3328 72 0 0 chr12 49397369 49397798 -71859732 + L1_Mus1 LINE L1 6134 6562 -5 5 961 1698 132 4 4 chr12 49397800 49398066 -71859464 + MT2C_Mm LTR ERVL 210 475 0 5 961 598 236 8 23 chr12 49398135 49398265 -71859265 - ORR1B1 LTR MaLR -146 248 121 5 961 1461 209 109 141 chr12 49398257 49398881 -71858649 + RMER6A LTR ERVK 90 693 -63 5 961 795 189 59 0 chr12 49398874 49399027 -71858503 + RMER6D LTR ERVK 559 720 0 5 961 264 312 96 52 chr12 49399027 49399162 -71858368 - Lx9 LINE L1 -1046 6427 6287 5 961 385 305 62 8 chr12 49399591 49399847 -71857683 - Lx9 LINE L1 -1685 5959 5655 5 961 304 340 110 63 chr12 49399855 49400300 -71857230 - L1MCa LINE L1 -5256 1252 787 5 961 24 32 0 0 chr12 49400388 49400419 -71857111 + AT_rich Low_complexity Low_complexity 1 31 0 5 961 1204 197 35 110 chr12 49400474 49400793 -71856737 + RLTR28 LTR ERVL 4 298 -226 5 961 297 0 0 0 chr12 49400793 49400826 -71856704 + (TTA)n Simple_repeat Simple_repeat 2 34 0 5 961 1058 96 7 0 chr12 49400840 49400986 -71856544 - B1_Mus1 SINE Alu 0 148 2 5 961 2373 174 67 4 chr12 49400987 49401450 -71856080 + Lx3C LINE L1 6436 6927 -49 5 961 22 0 0 0 chr12 49401460 49401482 -71856048 + AT_rich Low_complexity Low_complexity 1 22 0 5 961 738 160 0 0 chr12 49401815 49401946 -71855584 + CT-rich Low_complexity Low_complexity 5 135 0 5 961 307 243 51 77 chr12 49401946 49402102 -71855428 - L1ME3A LINE L1 -12 6161 6010 5 961 265 292 15 14 chr12 49402275 49402407 -71855123 + MTE2a LTR MaLR 6 146 -233 5 961 524 314 50 22 chr12 49402571 49402879 -71854651 - MTC LTR MaLR -1 420 2 5 961 1159 36 0 0 chr12 49403139 49403277 -71854253 - B1_Mm SINE Alu -8 139 2 5 961 240 35 0 0 chr12 49403291 49403320 -71854210 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 961 490 212 62 0 chr12 49403320 49403433 -71854097 - RMER1C Other Other 0 1342 1223 5 961 336 24 0 0 chr12 49403437 49403478 -71854052 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 961 309 306 0 18 chr12 49403486 49403596 -71853934 - RMER1C Other Other -195 1147 1040 5 961 818 272 80 14 chr12 49403639 49403915 -71853615 + Lx4B LINE L1 6587 6880 -178 5 961 202 159 0 64 chr12 49403999 49404046 -71853484 + A-rich Low_complexity Low_complexity 4 47 0 6 961 3302 176 16 30 chr12 49404228 49404575 -71852955 + L1_Mur2 LINE L1 662 1001 -6085 6 961 591 15 0 0 chr12 49404575 49404643 -71852887 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 6 961 4541 138 17 15 chr12 49404643 49405639 -71851891 + L1_Mur2 LINE L1 1002 2000 -3877 6 961 2611 130 21 0 chr12 49405635 49406058 -71851472 + L1_Mur2 LINE L1 2485 2916 -2961 6 961 293 308 93 37 chr12 49406344 49406506 -71851024 + RMER2 LTR ERV1 373 543 -24 6 961 534 175 134 24 chr12 49406522 49406686 -71850844 + Lx4A LINE L1 2903 3084 -2793 6 961 521 29 0 28 chr12 49406686 49406696 -71850834 + (GAA)n Simple_repeat Simple_repeat 2 11 0 6 961 1093 108 0 11 chr12 49406696 49406874 -71850656 + (GGA)n Simple_repeat Simple_repeat 3 178 0 6 961 521 29 0 28 chr12 49406874 49406935 -71850595 + (GAA)n Simple_repeat Simple_repeat 3 62 0 6 961 1574 122 49 7 chr12 49406935 49407223 -71850307 + Lx4A LINE L1 3046 3345 -2532 6 961 8192 167 28 12 chr12 49407216 49409342 -71848188 + Lx4A LINE L1 4889 7056 -2 6 961 189 0 0 0 chr12 49410049 49410070 -71847460 + (A)n Simple_repeat Simple_repeat 1 21 0 6 961 27 49 0 0 chr12 49410914 49410955 -71846575 + AT_rich Low_complexity Low_complexity 1 41 0 6 961 527 312 75 42 chr12 49411372 49411706 -71845824 + Lx8 LINE L1 6841 7185 -288 6 961 513 386 53 18 chr12 49412040 49412322 -71845208 + B4A SINE B4 1 292 0 6 961 240 239 42 14 chr12 49412330 49412402 -71845128 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 6 961 788 156 342 0 chr12 49412502 49412745 -71844785 - RLTR22_Mus LTR ERVK -997 811 486 6 961 306 0 0 0 chr12 49412746 49412780 -71844750 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 961 609 76 0 0 chr12 49412780 49412871 -71844659 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 961 2385 191 41 4 chr12 49412874 49413358 -71844172 + RLTR16 LTR ERVK 4 505 0 6 961 281 312 13 0 chr12 49413576 49413653 -71843877 + ID4_ SINE ID 3 80 -3 6 961 32 0 0 0 chr12 49413679 49413711 -71843819 + AT_rich Low_complexity Low_complexity 1 32 0 6 962 405 0 0 0 chr12 49414594 49414639 -71842891 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 6 962 3704 205 66 18 chr12 49414639 49415492 -71842038 - Lx4B LINE L1 -21 7037 6144 6 962 2827 230 74 64 chr12 49416319 49416766 -71840764 + L1Md_F LINE L1 204 656 -5960 6 962 1946 62 4 0 chr12 49416766 49417024 -71840506 + L1Md_F2 LINE L1 6322 6580 -2 6 962 2827 230 74 64 chr12 49417024 49417293 -71840237 + L1Md_F LINE L1 657 901 -5715 6 962 263 53 51 34 chr12 49417293 49417352 -71840178 + (CAA)n Simple_repeat Simple_repeat 2 61 0 6 962 28976 98 25 21 chr12 49417352 49422000 -71835530 + L1Md_F LINE L1 902 5593 -290 6 962 4749 92 6 6 chr12 49422000 49422660 -71834870 + L1Md_F2 LINE L1 5923 6582 0 6 962 23 0 0 0 chr12 49422745 49422768 -71834762 + AT_rich Low_complexity Low_complexity 1 23 0 6 962 28 29 0 0 chr12 49423138 49423173 -71834357 + AT_rich Low_complexity Low_complexity 1 35 0 6 962 33 0 0 0 chr12 49424457 49424490 -71833040 + AT_rich Low_complexity Low_complexity 1 33 0 6 962 358 19 0 53 chr12 49424512 49424569 -71832961 + (TTATA)n Simple_repeat Simple_repeat 1 54 0 6 962 277 317 62 7 chr12 49424649 49424795 -71832735 - L1MA4 LINE L1 -336 5964 5811 6 962 415 273 67 64 chr12 49424895 49425367 -71832163 - L1MA4 LINE L1 -669 5622 5139 6 962 297 151 0 0 chr12 49425463 49425516 -71832014 + T-rich Low_complexity Low_complexity 1 53 0 6 962 729 149 62 62 chr12 49425640 49425819 -71831711 - Lx LINE L1 -7 6647 6469 6 962 1016 137 16 5 chr12 49426073 49426257 -71831273 + L1_Mus3 LINE L1 6447 6632 -6 6 962 6848 169 18 16 chr12 49426426 49426710 -71830820 + L1_Mm LINE L1 4366 4639 -1244 6 962 196 30 61 0 chr12 49426710 49426743 -71830787 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 962 6848 169 18 16 chr12 49426743 49427729 -71829801 + L1_Mm LINE L1 4640 5639 -244 6 962 894 301 47 41 chr12 49427807 49428314 -71829216 + Lx7 LINE L1 5162 5704 -1992 6 962 3614 155 12 52 chr12 49428828 49429495 -71828035 - RLTR26 LTR ERVK -1 641 2 6 962 338 154 12 82 chr12 49430832 49430917 -71826613 - RLTRETN_Mm LTR ERVK -240 82 4 6 962 330 26 0 0 chr12 49430917 49430956 -71826574 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 962 289 333 8 98 chr12 49430978 49431111 -71826419 - B2_Mm2 SINE B2 -74 121 1 6 962 1248 305 61 70 chr12 49431259 49431408 -71826122 + RMER15 LTR ERVL 22 170 -405 6 962 748 67 16 24 chr12 49431408 49431531 -71825999 + L1_Mus3 LINE L1 6504 6625 -13 6 962 4002 90 68 2 chr12 49431529 49432099 -71825431 + L1_Mus2 LINE L1 5959 6566 0 6 962 1248 305 61 70 chr12 49432099 49432505 -71825025 + RMER15 LTR ERVL 171 572 -3 6 962 23 33 0 0 chr12 49433315 49433345 -71824185 + AT_rich Low_complexity Low_complexity 1 30 0 6 962 31 0 0 0 chr12 49433756 49433787 -71823743 + AT_rich Low_complexity Low_complexity 1 31 0 6 962 1198 67 8 1 chr12 49433830 49433996 -71823534 + L1_Mus2 LINE L1 6292 6459 -123 6 962 21 71 0 0 chr12 49434008 49434050 -71823480 + AT_rich Low_complexity Low_complexity 1 42 0 6 962 31223 104 5 1 chr12 49434053 49440363 -71817167 + L1_Mus1 LINE L1 231 6565 -2 6 962 435 108 450 0 chr12 49440446 49440557 -71816973 - L1_Mus4 LINE L1 -1 6635 6475 6 962 181 304 0 0 chr12 49441086 49441132 -71816398 + L3 LINE CR1 2515 2560 -1929 6 962 34443 47 0 5 chr12 49441343 49446943 -71810587 + L1Md_Gf LINE L1 126 5791 -95 6 962 3855 45 2 0 chr12 49446943 49447414 -71810116 + L1Md_T LINE L1 6111 6582 0 6 962 256 375 73 17 chr12 49448759 49448938 -71808592 + MLT2C2 LTR ERVL 11 199 -265 6 962 827 286 111 22 chr12 49449591 49449960 -71807570 + ORR1D1 LTR MaLR 1 372 -2 6 962 330 87 0 0 chr12 49450685 49450731 -71806799 + (T)n Simple_repeat Simple_repeat 1 46 0 6 962 367 310 40 45 chr12 49450732 49450908 -71806622 - RMER15 LTR ERVL -53 522 348 6 962 903 164 13 0 chr12 49451103 49451330 -71806200 + CT-rich Low_complexity Low_complexity 1 230 0 6 962 426 182 13 0 chr12 49451362 49451439 -71806091 - RMER15-int LTR ERVL -664 4335 4258 6 962 517 316 11 39 chr12 49451690 49451868 -71805662 - RMER15-int LTR ERVL -2850 2149 1977 6 962 22 0 0 0 chr12 49452457 49452479 -71805051 + AT_rich Low_complexity Low_complexity 1 22 0 6 962 6552 149 19 2 chr12 49452479 49453589 -71803941 - L1_Mur2 LINE L1 -426 5451 4323 6 962 1056 144 74 35 chr12 49453584 49453786 -71803744 - Lx LINE L1 -2 6652 6443 6 962 281 296 101 10 chr12 49453796 49453895 -71803635 - B1F SINE Alu -39 110 3 6 962 28 48 0 0 chr12 49454140 49454182 -71803348 + AT_rich Low_complexity Low_complexity 1 42 0 6 962 31 68 0 0 chr12 49454258 49454317 -71803213 + AT_rich Low_complexity Low_complexity 1 59 0 6 962 23 33 0 0 chr12 49454699 49454729 -71802801 + AT_rich Low_complexity Low_complexity 1 30 0 6 962 268 272 22 0 chr12 49455793 49455885 -71801645 + (TA)n Simple_repeat Simple_repeat 1 94 0 6 962 315 303 65 15 chr12 49455931 49456132 -71801398 - L1MA4 LINE L1 -416 5884 5674 6 962 1216 237 73 40 chr12 49456132 49456313 -71801217 - ORR1C2 LTR MaLR 0 384 189 6 962 828 32 37 37 chr12 49456313 49456476 -71801054 + (GAGAA)n Simple_repeat Simple_repeat 5 167 0 6 962 1216 237 73 40 chr12 49456476 49456664 -71800866 - ORR1C2 LTR MaLR -196 188 4 6 962 259 287 45 14 chr12 49456903 49456992 -71800538 - ID2 SINE ID -52 100 13 6 962 255 79 0 0 chr12 49457370 49457408 -71800122 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 6 962 1084 144 11 6 chr12 49457605 49457786 -71799744 - B2_Mm2 SINE B2 -9 186 5 6 962 1348 206 12 4 chr12 49458448 49458702 -71798828 + ORR1C1 LTR MaLR 1 256 -122 6 962 7210 18 0 0 chr12 49458738 49459565 -71797965 - L1_Mm LINE L1 -154 5729 4903 6 962 1849 57 0 20 chr12 49459565 49459814 -71797716 + L1Md_A LINE L1 6339 6582 0 6 962 1595 157 0 90 chr12 49459814 49460024 -71797506 + Lx3B LINE L1 5948 6142 -831 6 962 3398 38 0 14 chr12 49460024 49460449 -71797081 + L1Md_F2 LINE L1 6162 6580 -2 6 962 1595 157 0 90 chr12 49460449 49460603 -71796927 + Lx3B LINE L1 6143 6279 -694 6 962 243 0 0 0 chr12 49460604 49460631 -71796899 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 962 2158 176 57 57 chr12 49460631 49461071 -71796459 + Lx3B LINE L1 6347 6786 -187 6 962 340 200 0 14 chr12 49461072 49461143 -71796387 + ORR1C1 LTR MaLR 324 393 -1 6 962 2018 197 9 24 chr12 49461403 49461860 -71795670 + Lx6 LINE L1 3512 3961 -1916 6 962 476 308 73 39 chr12 49461862 49462095 -71795435 - RMER12 LTR ERVK -66 1256 1016 6 962 2346 257 69 40 chr12 49462222 49463001 -71794529 - RLTR22_Mur LTR ERVK -1046 802 1 6 962 4506 208 35 28 chr12 49463001 49463650 -71793880 + Lx6 LINE L1 4762 5417 -463 6 962 1668 176 63 3 chr12 49463650 49463969 -71793561 - Lx2 LINE L1 0 6997 6660 6 962 4506 225 33 20 chr12 49463969 49464702 -71792828 + Lx6 LINE L1 5418 6161 -1299 6 962 627 333 13 0 chr12 49464717 49464948 -71792582 + Lx6 LINE L1 6518 6751 -709 6 962 446 0 0 18 chr12 49464960 49465015 -71792515 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 962 302 241 14 0 chr12 49465028 49465104 -71792426 + MURVY-int LTR ERV1 3166 3234 -1456 6 962 180 258 89 40 chr12 49465205 49465306 -71792224 - L3 LINE CR1 -863 3626 3521 6 962 1077 310 77 56 chr12 49465307 49466916 -71790614 + MURVY-int LTR ERV1 3628 5126 -2326 6 962 611 276 71 34 chr12 49467003 49467269 -71790261 + Lx9 LINE L1 7187 7462 -182 6 962 1144 193 0 0 chr12 49467316 49467544 -71789986 - L1_Mur1 LINE L1 -904 4982 4755 6 962 8020 140 11 3 chr12 49467660 49468363 -71789167 + Lx3B LINE L1 5202 5906 -1067 6 962 621 27 0 0 chr12 49468363 49468438 -71789092 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 962 8020 143 41 7 chr12 49468438 49469457 -71788073 + Lx3B LINE L1 5907 6972 -1 6 962 35 24 0 0 chr12 49469913 49469955 -71787575 + AT_rich Low_complexity Low_complexity 1 42 0 6 962 202 365 0 0 chr12 49470046 49470224 -71787306 + T-rich Low_complexity Low_complexity 1 178 0 6 962 320 381 29 7 chr12 49470458 49470598 -71786932 + B1F2 SINE Alu 6 148 -1 6 962 558 269 82 0 chr12 49470890 49471061 -71786469 - Lx6 LINE L1 -579 6881 6697 6 962 860 194 32 32 chr12 49471060 49471278 -71786252 - L1_Mur3 LINE L1 -600 5280 5063 6 962 575 243 28 34 chr12 49471508 49471685 -71785845 - B3 SINE B2 -7 188 20 6 962 211 385 0 0 chr12 49471723 49471801 -71785729 - ID4 SINE ID -5 78 1 6 962 444 37 0 0 chr12 49472111 49472165 -71785365 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 962 883 267 76 55 chr12 49473639 49473968 -71783562 + RMER13A LTR ERVK 2 337 -523 6 962 31 26 0 0 chr12 49474924 49474962 -71782568 + AT_rich Low_complexity Low_complexity 1 38 0 6 962 486 294 68 34 chr12 49475024 49475260 -71782270 - L1_Mur3 LINE L1 -332 5548 5305 6 962 200 208 0 40 chr12 49475302 49475352 -71782178 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 6 962 730 254 106 35 chr12 49475375 49475712 -71781818 + Lx7 LINE L1 5537 5897 -1576 7 962 3518 13 2 0 chr12 49475742 49476137 -71781393 + MTA_Mm LTR MaLR 1 396 0 7 962 9250 25 6 1 chr12 49476137 49477230 -71780300 + MTA_Mm-int LTR MaLR 1 1098 0 7 962 3518 13 2 0 chr12 49477230 49477625 -71779905 + MTA_Mm LTR MaLR 1 396 0 7 962 231 349 27 9 chr12 49478055 49478165 -71779365 + L1MC LINE L1 5532 5643 -2239 7 962 3377 95 8 45 chr12 49478588 49479096 -71778434 + L1_Mus2 LINE L1 6078 6566 0 7 962 541 125 0 20 chr12 49479320 49479418 -71778112 - B2_Mm1a SINE B2 -7 186 91 7 962 1010 137 43 0 chr12 49479462 49479623 -71777907 - B2_Mm2 SINE B2 -14 181 14 7 962 243 238 16 0 chr12 49479741 49479804 -71777726 + L1_Mur3 LINE L1 1897 1960 -3920 7 962 335 217 48 2 chr12 49479813 49479923 -71777607 + L1_Mur3 LINE L1 2488 2620 -3227 7 962 485 233 0 0 chr12 49479927 49480043 -71777487 + Lx7 LINE L1 6500 6615 -39 7 962 34 93 0 0 chr12 49480043 49480140 -71777390 + AT_rich Low_complexity Low_complexity 1 97 0 7 962 7386 58 18 3 chr12 49480162 49481269 -71776261 - L1Md_F2 LINE L1 0 6582 5452 7 962 548 221 12 37 chr12 49481316 49481480 -71776050 + L1_Mur3 LINE L1 2594 2753 -3127 7 962 22593 103 6 7 chr12 49481979 49486112 -71771418 + L1_Mus1 LINE L1 2434 6565 -2 7 962 342 152 0 96 chr12 49486125 49486198 -71771332 + RMER1A Other Other 791 856 -174 7 962 384 183 0 0 chr12 49486199 49486270 -71771260 + RMER1B Other Other 985 1055 -11 7 962 410 79 0 0 chr12 49486275 49486338 -71771192 + L1_Mus2 LINE L1 6504 6566 0 7 962 437 202 71 41 chr12 49487172 49487270 -71770260 + RMER6D LTR ERVK 5 105 -585 7 962 7084 68 42 5 chr12 49487277 49488356 -71769174 - L1_Mus1 LINE L1 0 6567 5450 7 962 476 224 118 7 chr12 49488385 49488520 -71769010 + RMER6D LTR ERVK 210 359 -361 7 962 183 100 0 0 chr12 49488562 49488592 -71768938 + (CAGTT)n Simple_repeat Simple_repeat 2 31 0 7 962 21 0 0 0 chr12 49491400 49491421 -71766109 + AT_rich Low_complexity Low_complexity 1 21 0 7 962 30 27 0 0 chr12 49492246 49492283 -71765247 + AT_rich Low_complexity Low_complexity 1 37 0 7 962 416 326 48 34 chr12 49492294 49492440 -71765090 - B3 SINE B2 -68 148 1 7 962 532 287 80 94 chr12 49492774 49493350 -71764180 + L1M2 LINE L1 4627 5194 -949 7 962 540 68 0 0 chr12 49494430 49494503 -71763027 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 962 1039 370 47 22 chr12 49495797 49496563 -71760967 + Lx8 LINE L1 6687 7471 -2 7 962 239 314 28 37 chr12 49496583 49496692 -71760838 - RMER30 DNA MER1_type -87 115 8 7 962 293 415 7 52 chr12 49496900 49497055 -71760475 + RSINE1 SINE B4 3 150 -15 7 962 688 326 95 46 chr12 49497068 49497415 -71760115 - MTD LTR MaLR -45 374 11 7 962 39 60 0 0 chr12 49497508 49497575 -71759955 + AT_rich Low_complexity Low_complexity 1 67 0 7 962 225 283 72 113 chr12 49497689 49498024 -71759506 - L1M5 LINE L1 -1210 4936 4616 7 962 7303 124 35 5 chr12 49498603 49500000 -71757530 + Lx3A LINE L1 5427 6865 -116 7 962 472 152 9 9 chr12 49500001 49500107 -71757423 + Lx3A LINE L1 6870 6975 -6 1 962 346 269 90 30 chr12 49500251 49500385 -71757145 - MTEa LTR MaLR -30 349 208 2 962 1434 279 70 19 chr12 49500795 49501427 -71756103 - RCHARR1 DNA MER1_type -9 965 272 3 962 239 346 20 0 chr12 49501656 49501757 -71755773 + Lx9 LINE L1 7340 7442 -202 4 962 1049 110 0 0 chr12 49502071 49502216 -71755314 + B1_Mus2 SINE Alu 1 145 -2 5 962 879 275 62 3 chr12 49502451 49502772 -71754758 + Lx9 LINE L1 7176 7515 -129 6 962 3098 46 7 30 chr12 49502830 49503235 -71754295 + MTA_Mm LTR MaLR 1 396 0 7 962 1379 190 15 158 chr12 49504626 49504855 -71752675 + RLTR19 LTR ERVK 1 180 -535 8 962 2885 134 6 56 chr12 49504855 49505377 -71752153 - Lx LINE L1 -2 6652 6157 9 962 1739 195 15 9 chr12 49505377 49505708 -71751822 + RLTR19 LTR ERVK 167 499 0 8 962 253 222 37 0 chr12 49506086 49506140 -71751390 - B3A SINE B2 -70 128 73 1 962 222 91 0 0 chr12 49506140 49506173 -71751357 - B2_Mm2 SINE B2 -155 40 8 1 962 2025 264 93 10 chr12 49506173 49506562 -71750968 + Lx6 LINE L1 6453 6870 -590 1 962 378 0 0 0 chr12 49506562 49506604 -71750926 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 962 2025 264 93 10 chr12 49506604 49506826 -71750704 + Lx6 LINE L1 6871 7114 -346 1 962 439 83 0 35 chr12 49506845 49506940 -71750590 - L1_Mus2 LINE L1 0 6582 6496 1 962 1132 268 18 9 chr12 49506939 49507267 -71750263 + Lx6 LINE L1 7126 7456 -4 1 962 3540 10 5 0 chr12 49507630 49508024 -71749506 - MTA_Mm LTR MaLR 0 396 1 1 962 9326 27 5 0 chr12 49508024 49509117 -71748413 - MTA_Mm-int LTR MaLR 0 1098 1 1 962 3520 13 5 0 chr12 49509117 49509511 -71748019 - MTA_Mm LTR MaLR 0 396 1 1 962 39 22 0 0 chr12 49509544 49509590 -71747940 + AT_rich Low_complexity Low_complexity 1 46 0 1 962 422 240 9 19 chr12 49509646 49509752 -71747778 - Lx9 LINE L1 -438 7206 7102 1 962 271 311 48 16 chr12 49510074 49510198 -71747332 - ERVL-B4-int LTR ERVL -3934 1780 1653 1 962 678 349 26 15 chr12 49510380 49510834 -71746696 - ERVL-B4-int LTR ERVL -4305 1409 951 1 962 250 295 32 0 chr12 49510874 49510969 -71746561 - ERVL-B4-int LTR ERVL -4853 861 764 1 962 419 360 68 11 chr12 49511035 49511417 -71746113 - ERVL-B4-int LTR ERVL -5045 669 266 1 962 497 237 21 21 chr12 49511436 49511578 -71745952 - ERVL-B4-int LTR ERVL -5549 165 24 1 962 6224 67 8 6 chr12 49511846 49512700 -71744830 - L1Md_F2 LINE L1 0 6582 5727 1 962 387 355 84 28 chr12 49512955 49513204 -71744326 - MLT2B4 LTR ERVL -239 317 55 2 962 213 289 24 0 chr12 49513278 49513361 -71744169 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 2 962 510 285 32 38 chr12 49513378 49513535 -71743995 + B3 SINE B2 1 156 -60 2 962 3260 65 23 5 chr12 49513662 49514136 -71743394 + L1Md_F2 LINE L1 6122 6582 0 2 962 2126 284 82 15 chr12 49514147 49515129 -71742401 + Lx9 LINE L1 6596 7643 -1 2 962 23 0 0 0 chr12 49515639 49515662 -71741868 + AT_rich Low_complexity Low_complexity 1 23 0 2 962 22 0 0 0 chr12 49516105 49516127 -71741403 + AT_rich Low_complexity Low_complexity 1 22 0 2 962 1577 208 59 0 chr12 49517025 49517347 -71740183 - ORR1B1 LTR MaLR 0 394 54 2 962 2192 225 99 30 chr12 49517377 49517945 -71739585 - ORR1B1-int LTR MaLR -3 1506 900 2 962 471 260 0 0 chr12 49517949 49518053 -71739477 - ORR1B1-int LTR MaLR -513 996 893 2 962 305 275 0 14 chr12 49518054 49518124 -71739406 - B1_Mus1 SINE Alu -79 69 1 2 962 418 324 73 47 chr12 49518421 49518612 -71738918 - MT2B LTR ERVL -404 197 2 2 962 351 0 0 0 chr12 49518660 49518699 -71738831 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 962 414 0 0 0 chr12 49518699 49518744 -71738786 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 962 1315 306 68 17 chr12 49518768 49519417 -71738113 - Lx9 LINE L1 -240 7404 6723 3 962 765 330 22 3 chr12 49519447 49519769 -71737761 - Lx9 LINE L1 -974 6670 6343 3 962 1398 237 70 28 chr12 49519806 49520162 -71737368 - MTC LTR MaLR -3 418 48 3 962 36174 54 7 8 chr12 49520162 49526462 -71731068 - L1Md_T LINE L1 -5 6577 287 3 962 283 178 29 143 chr12 49526462 49526532 -71730998 - MTC LTR MaLR -313 66 5 3 962 8910 138 44 11 chr12 49526613 49528888 -71728642 + L1VL4 LINE L1 217 2565 -994 3 962 537 285 10 117 chr12 49528915 49529300 -71728230 + L1VL1 LINE L1 57 400 -6022 3 962 400 250 35 21 chr12 49529380 49529523 -71728007 + L1VL2 LINE L1 675 819 -5797 3 962 1312 190 18 209 chr12 49529551 49529771 -71727759 + L1VL2 LINE L1 779 932 -5684 3 962 1041 96 0 27 chr12 49529771 49529783 -71727747 - B1_Mm SINE Alu 0 147 139 3 962 720 35 0 0 chr12 49529783 49529870 -71727660 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 962 1041 96 0 27 chr12 49529870 49530007 -71727523 - B1_Mm SINE Alu -9 138 2 3 962 13620 108 12 14 chr12 49530007 49532451 -71725079 + L1VL2 LINE L1 933 3358 -2525 3 962 2881 207 35 6 chr12 49532448 49533172 -71724358 - L1Md_A LINE L1 -5718 1006 262 4 962 228 307 124 77 chr12 49533297 49533530 -71724000 - MT2B LTR ERVL -76 525 282 4 962 2227 188 162 45 chr12 49533530 49534148 -71723382 + RMER6C LTR ERVK 1 690 0 4 962 889 105 5 2 chr12 49534199 49534341 -71723189 + L1_Mus2 LINE L1 6124 6241 -325 4 962 599 42 0 0 chr12 49534582 49534654 -71722876 + L1Md_F3 LINE L1 5515 5586 -297 4 962 7976 44 5 4 chr12 49534655 49535638 -71721892 + L1Md_F3 LINE L1 5588 6571 -13 4 962 419 0 20 0 chr12 49535938 49535989 -71721541 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 962 455 239 258 0 chr12 49535989 49536152 -71721378 + ORR1D1 LTR MaLR 157 361 -13 4 962 376 216 11 11 chr12 49536179 49536268 -71721262 + ORR1D1-int LTR MaLR 1 89 -1420 4 962 692 188 19 63 chr12 49536276 49536435 -71721095 - RMER2 LTR ERV1 -2 565 414 4 962 242 294 85 58 chr12 49536430 49536600 -71720930 - RLTR41 LTR ERV1 -50 457 253 4 962 1679 141 4 15 chr12 49537065 49537331 -71720199 - RMER2 LTR ERV1 -143 424 162 4 962 2415 264 85 30 chr12 49537312 49538038 -71719492 + ORR1D1-int LTR MaLR 605 1370 0 4 962 777 249 25 5 chr12 49538038 49538271 -71719259 + ORR1D1 LTR MaLR 1 245 -133 4 962 290 275 201 22 chr12 49538285 49538301 -71719229 + ORR1D1 LTR MaLR 164 179 -195 4 962 680 59 10 0 chr12 49538301 49538403 -71719127 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 962 290 275 201 22 chr12 49538403 49538520 -71719010 + ORR1D1 LTR MaLR 180 321 -53 4 962 1243 240 25 62 chr12 49538726 49539109 -71718421 - ORR1C2 LTR MaLR -54 330 1 5 962 245 301 96 0 chr12 49539348 49539431 -71718099 + Lx8 LINE L1 7128 7218 -255 5 962 216 0 0 0 chr12 49540408 49540432 -71717098 + (T)n Simple_repeat Simple_repeat 1 24 0 5 962 1287 248 3 12 chr12 49540682 49541004 -71716526 - Lx2B LINE L1 -9 6991 6673 5 962 4859 138 16 22 chr12 49540999 49541887 -71715643 + L1_Mur2 LINE L1 4272 5153 -724 5 962 390 273 43 97 chr12 49541909 49542116 -71715414 - B3A SINE B2 -1 197 2 5 120 4822 288 44 66 chr12 49543318 49545339 -71712191 + RodERV21-int LTR ERV1 741 2717 -2274 5 963 339 316 34 59 chr12 49545535 49545891 -71711639 + RodERV21-int LTR ERV1 3638 3984 -3107 5 963 2830 124 16 18 chr12 49546273 49546726 -71710804 - RLTR44E LTR ERVK 0 452 1 5 963 20906 55 3 30 chr12 49546726 49549614 -71707916 - RLTR44-int LTR ERVK 0 2812 1 5 963 2539 107 126 10 chr12 49549614 49550019 -71707511 - RLTR44E LTR ERVK 0 452 1 5 963 974 346 51 42 chr12 49550838 49551657 -71705873 + RodERV21-int LTR ERV1 2911 3739 -1252 5 963 296 0 51 0 chr12 49551657 49551696 -71705834 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 963 974 346 51 42 chr12 49551696 49551742 -71705788 + RodERV21-int LTR ERV1 3740 3784 -1207 5 963 1290 339 18 38 chr12 49551881 49552279 -71705251 + RodERV21-int LTR ERV1 4088 4476 -515 5 963 1135 95 0 0 chr12 49552279 49552426 -71705104 + B1_Mus1 SINE Alu 2 148 0 6 963 1290 339 18 38 chr12 49552426 49552747 -71704783 + RodERV21-int LTR ERV1 4477 4793 -198 5 963 787 137 0 54 chr12 49554419 49554566 -71702964 + B1_Mur4 SINE Alu 2 140 -10 6 963 594 0 0 0 chr12 49554566 49554632 -71702898 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 6 963 306 82 82 0 chr12 49554632 49554681 -71702849 + B1_Mur4 SINE Alu 93 145 -5 6 963 664 252 163 71 chr12 49554756 49555093 -71702437 + RLTR9A LTR ERVK 1 368 0 6 963 471 329 86 14 chr12 49555157 49555447 -71702083 - Lx9 LINE L1 -594 7050 6740 6 963 1267 270 99 32 chr12 49555462 49556383 -71701147 - L1_Rod LINE L1 -13 5867 4821 6 963 297 0 0 0 chr12 49556660 49556693 -71700837 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 963 315 0 0 0 chr12 49556725 49556760 -71700770 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 963 606 60 0 0 chr12 49556760 49556843 -71700687 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 963 367 331 48 0 chr12 49557084 49557250 -71700280 - L1MEc LINE L1 -4905 1495 1322 7 963 21 0 0 0 chr12 49558036 49558057 -71699473 + AT_rich Low_complexity Low_complexity 1 21 0 7 963 452 241 35 9 chr12 49558189 49558302 -71699228 + B3 SINE B2 1 116 -100 7 963 634 366 54 44 chr12 49559101 49559414 -71698116 + MER74C LTR ERVL 40 358 -102 7 963 1379 214 58 186 chr12 49559414 49560074 -71697456 - RMER15 LTR ERVL 0 575 1 7 963 634 366 54 44 chr12 49560074 49560169 -71697361 + MER74C LTR ERVL 359 452 -8 7 963 23 86 0 0 chr12 49561389 49561447 -71696083 + AT_rich Low_complexity Low_complexity 1 58 0 7 963 24 53 0 0 chr12 49562496 49562534 -71694996 + AT_rich Low_complexity Low_complexity 1 38 0 7 963 25 0 0 0 chr12 49564177 49564202 -71693328 + AT_rich Low_complexity Low_complexity 1 25 0 7 963 262 290 9 53 chr12 49565451 49565564 -71691966 + PB1D10 SINE Alu 9 116 -1 7 963 666 47 0 0 chr12 49565696 49565782 -71691748 + (TA)n Simple_repeat Simple_repeat 2 87 0 7 963 24 32 0 0 chr12 49567828 49567859 -71689671 + AT_rich Low_complexity Low_complexity 1 31 0 8 963 5796 203 30 8 chr12 49568095 49569627 -71687903 + Lx2B LINE L1 5397 7050 -8 8 963 8123 53 1 2 chr12 49570172 49571692 -71685838 - L1Md_F2 LINE L1 -1 6581 5063 8 963 1348 241 61 54 chr12 49572028 49572605 -71684925 - Lx6 LINE L1 -26 7434 6500 8 963 600 256 91 40 chr12 49573028 49573203 -71684327 - B3 SINE B2 0 216 33 8 963 270 293 84 14 chr12 49573268 49573552 -71683978 - L1MCa LINE L1 -3599 2722 2419 8 963 24 67 0 0 chr12 49573599 49573644 -71683886 + AT_rich Low_complexity Low_complexity 1 45 0 8 963 263 286 11 0 chr12 49573992 49574083 -71683447 - L1MCa LINE L1 -4711 1797 1706 8 963 462 375 36 0 chr12 49574129 49574189 -71683341 + B4 SINE B4 22 86 -206 8 963 360 0 0 0 chr12 49574189 49574229 -71683301 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 8 963 462 375 36 0 chr12 49574229 49574336 -71683194 + B4 SINE B4 87 194 -98 8 963 422 79 16 0 chr12 49574404 49574467 -71683063 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 963 255 309 122 19 chr12 49574484 49574698 -71682832 - L1MCa LINE L1 -4802 1706 1471 8 963 311 169 0 10 chr12 49574756 49574852 -71682678 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 9 963 367 209 35 0 chr12 49574857 49574943 -71682587 - Lx9 LINE L1 -205 7439 7351 9 963 1549 230 33 11 chr12 49574934 49575294 -71682236 + Lx9 LINE L1 6940 7307 -337 9 963 36 40 0 0 chr12 49575583 49575633 -71681897 + AT_rich Low_complexity Low_complexity 1 50 0 9 963 23 33 0 0 chr12 49576501 49576531 -71680999 + AT_rich Low_complexity Low_complexity 1 30 0 9 963 212 365 190 12 chr12 49576746 49576993 -71680537 + L2 LINE L2 1180 1470 -1949 9 963 688 311 20 5 chr12 49577593 49577790 -71679740 + ID_B1 SINE B4 24 223 -1 9 963 3069 245 150 26 chr12 49578210 49579635 -71677895 + Lx7 LINE L1 2323 3924 -1956 9 963 2626 260 55 34 chr12 49579639 49580502 -71677028 + Lx7 LINE L1 4866 5746 -134 9 963 30811 92 8 47 chr12 49580506 49584999 -71672531 - L1Md_F3 LINE L1 -15 6569 2045 9 963 1546 158 124 0 chr12 49584999 49585290 -71672240 - IAPEY3_LTR LTR ERVK -5 327 1 9 963 30811 92 8 47 chr12 49585290 49586958 -71670572 - L1Md_F3 LINE L1 -15 2044 363 9 963 1622 253 136 21 chr12 49586957 49587378 -71670152 + Lx7 LINE L1 5739 6206 -1490 9 963 226 0 0 56 chr12 49587378 49587414 -71670116 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 963 1622 253 136 21 chr12 49587414 49587569 -71669961 + Lx7 LINE L1 6207 6383 -1313 9 963 3832 51 23 31 chr12 49587569 49588092 -71669438 - MURVY-LTR LTR ERV1 0 519 1 1 963 1622 253 136 21 chr12 49588092 49588119 -71669411 + Lx7 LINE L1 6384 6410 -1286 9 963 373 318 9 18 chr12 49588148 49588260 -71669270 + Lx7 LINE L1 7066 7176 -520 9 963 219 103 0 0 chr12 49588286 49588325 -71669205 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 963 366 23 0 0 chr12 49588511 49588554 -71668976 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 963 304 298 94 50 chr12 49588678 49588694 -71668836 - Lx LINE L1 -86 6890 6878 1 963 186 43 0 0 chr12 49588694 49588717 -71668813 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 1 963 1009 147 75 1 chr12 49588717 49588880 -71668650 - Lx LINE L1 -131 6523 6352 1 963 739 107 7 96 chr12 49588875 49589010 -71668520 + Lx LINE L1 6241 6363 -291 1 963 441 0 0 0 chr12 49589034 49589083 -71668447 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 963 807 315 52 109 chr12 49589098 49589599 -71667931 - MT2B LTR ERVL -72 529 59 1 963 207 0 0 0 chr12 49589599 49589622 -71667908 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 963 807 315 52 109 chr12 49589622 49589672 -71667858 - MT2B LTR ERVL -543 58 9 1 963 21 36 0 0 chr12 49589881 49589909 -71667621 + AT_rich Low_complexity Low_complexity 1 28 0 1 963 628 282 63 15 chr12 49590543 49590748 -71666782 - B3 SINE B2 0 216 2 1 963 3357 35 2 0 chr12 49591007 49591402 -71666128 - MTA_Mm LTR MaLR 0 396 1 1 963 207 100 0 0 chr12 49591589 49591619 -71665911 + (TCTCC)n Simple_repeat Simple_repeat 1 30 0 1 963 261 119 0 0 chr12 49591639 49591681 -71665849 + (TCTCCC)n Simple_repeat Simple_repeat 4 45 0 1 963 18066 63 231 3 chr12 49591698 49594151 -71663379 - L1Md_F2 LINE L1 0 6582 2830 1 963 3699 14 121 0 chr12 49594151 49594591 -71662939 - MT2_Mm LTR ERVL 0 493 1 1 963 18066 71 321 18 chr12 49594591 49596544 -71660986 - L1Md_F2 LINE L1 -3054 2829 928 1 963 435 242 0 0 chr12 49596542 49596637 -71660893 - L1Md_F2 LINE L1 -6191 425 331 1 963 747 109 55 0 chr12 49596663 49596773 -71660757 - MT2C_Mm LTR ERVL -85 390 275 1 963 232 316 60 50 chr12 49596878 49596978 -71660552 + RMER15 LTR ERVL 452 552 -23 1 963 180 77 0 0 chr12 49597028 49597054 -71660476 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1 963 24 32 0 0 chr12 49598744 49598775 -71658755 + AT_rich Low_complexity Low_complexity 1 31 0 1 963 4097 269 83 23 chr12 49599550 49601002 -71656528 - Lx9 LINE L1 -7 7637 6098 1 963 982 233 164 106 chr12 49601057 49601575 -71655955 + RMER4B LTR ERVK 1 548 -37 1 963 2972 241 48 26 chr12 49601656 49602567 -71654963 - L1_Rod LINE L1 0 5847 4917 1 963 397 343 9 0 chr12 49602740 49602848 -71654682 - ID_B1 SINE B4 -17 207 99 1 963 29 0 0 0 chr12 49602865 49602894 -71654636 + AT_rich Low_complexity Low_complexity 1 29 0 1 963 3814 167 35 3 chr12 49602894 49603584 -71653946 - Lx4A LINE L1 -1 7057 6346 1 963 2482 82 78 8 chr12 49603585 49603988 -71653542 + MURVY-LTR LTR ERV1 1 509 -10 1 963 1621 195 3 7 chr12 49603988 49604293 -71653237 - Lx4A LINE L1 -734 6324 6021 1 963 2885 149 65 0 chr12 49604299 49604959 -71652571 + Lx4A LINE L1 5285 6015 -1043 1 963 334 292 14 0 chr12 49604959 49605031 -71652499 - ID_B1 SINE B4 -130 94 22 1 963 21 100 0 0 chr12 49605249 49605319 -71652211 + AT_rich Low_complexity Low_complexity 1 70 0 1 963 282 289 191 51 chr12 49607249 49607406 -71650124 - B3A SINE B2 -18 180 2 1 963 557 159 88 0 chr12 49607446 49607559 -71649971 + URR1B DNA MER1_type 103 225 0 1 963 32 26 0 0 chr12 49607597 49607636 -71649894 + AT_rich Low_complexity Low_complexity 1 39 0 1 963 22 35 0 0 chr12 49608735 49608764 -71648766 + AT_rich Low_complexity Low_complexity 1 29 0 1 963 2589 117 38 87 chr12 49608782 49609289 -71648241 + RLTR45 LTR ERVK 1 482 0 1 963 21 0 0 0 chr12 49609750 49609771 -71647759 + AT_rich Low_complexity Low_complexity 1 21 0 1 963 189 0 0 0 chr12 49609926 49609947 -71647583 + (T)n Simple_repeat Simple_repeat 1 21 0 1 963 762 138 217 16 chr12 49610076 49610260 -71647270 + URR1B DNA MER1_type 5 225 0 1 963 312 193 0 0 chr12 49610945 49611002 -71646528 + RMER1B Other Other 807 863 -203 1 963 2678 99 26 125 chr12 49611005 49611400 -71646130 + LTRIS5 LTR ERV1 1 369 -78 1 963 3821 76 0 0 chr12 49611400 49611915 -71645615 + L1_Mus1 LINE L1 6078 6567 0 1 963 2695 99 26 125 chr12 49611915 49611939 -71645591 + LTRIS5 LTR ERV1 370 372 -75 1 963 838 43 25 8 chr12 49611939 49612057 -71645473 + (GAAAA)n Simple_repeat Simple_repeat 2 121 0 1 963 2695 99 26 125 chr12 49612057 49612131 -71645399 + LTRIS5 LTR ERV1 373 446 -1 1 963 413 66 0 16 chr12 49612193 49612255 -71645275 + (TTTTG)n Simple_repeat Simple_repeat 3 63 0 1 963 401 228 107 41 chr12 49612268 49612437 -71645093 - RLTR41 LTR ERV1 0 446 267 1 963 571 56 55 18 chr12 49612489 49612598 -71644932 + L1_Mus3 LINE L1 6526 6638 0 1 963 2792 121 22 95 chr12 49612866 49613422 -71644108 - MURVY-LTR LTR ERV1 0 519 5 1 963 301 253 0 22 chr12 49613471 49613560 -71643970 + RMER1B Other Other 961 1047 -19 1 963 1137 276 11 50 chr12 49613996 49614358 -71643172 + RLTR40 LTR ERVK 465 812 -5 1 963 258 32 0 0 chr12 49615407 49615438 -71642092 + (T)n Simple_repeat Simple_repeat 1 31 0 1 963 37571 16 12 16 chr12 49615459 49617106 -71640424 - L1Md_A LINE L1 -2 6580 4926 1 963 228 183 46 77 chr12 49617106 49617171 -71640359 + RMER20A LTR ERVK 186 248 -268 1 963 37571 16 12 16 chr12 49617171 49621695 -71635835 - L1Md_A LINE L1 -2 4925 379 1 963 195 69 0 0 chr12 49622865 49622894 -71634636 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 1 963 25 31 0 0 chr12 49622949 49622981 -71634549 + AT_rich Low_complexity Low_complexity 1 32 0 1 963 5148 92 7 0 chr12 49623837 49624536 -71632994 - L1_Mus1 LINE L1 0 6567 5864 1 963 297 51 0 0 chr12 49624551 49624590 -71632940 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 963 19974 131 14 31 chr12 49624590 49628866 -71628664 - L1Md_F LINE L1 -1256 4627 410 1 963 362 333 12 18 chr12 49629099 49629270 -71628260 + Lx8 LINE L1 6215 6384 -1089 1 963 550 275 14 0 chr12 49629648 49629790 -71627740 + Lx8 LINE L1 6377 6520 -953 1 963 447 139 0 0 chr12 49629964 49630065 -71627465 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 963 225 0 0 0 chr12 49630574 49630599 -71626931 + (A)n Simple_repeat Simple_repeat 1 25 0 1 963 453 36 0 0 chr12 49630919 49630974 -71626556 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 963 343 378 53 13 chr12 49631352 49631502 -71626028 + B3A SINE B2 4 159 -39 1 963 597 76 0 0 chr12 49631507 49631599 -71625931 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 963 209 186 58 11 chr12 49632111 49632198 -71625332 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 963 2320 59 3 0 chr12 49632254 49632544 -71624986 + L1_Mus1 LINE L1 6274 6564 -3 1 963 624 161 0 8 chr12 49633046 49633165 -71624365 - Lx2 LINE L1 -7 6990 6873 1 963 3352 5 0 0 chr12 49633169 49633536 -71623994 + IAPLTR1_Mm LTR ERVK 1 367 0 1 963 53041 25 14 2 chr12 49633536 49639937 -71617593 + IAPEz-int LTR ERVK 8 6481 0 1 963 3329 8 0 0 chr12 49639937 49640304 -71617226 + IAPLTR1_Mm LTR ERVK 1 367 0 1 963 2294 128 33 13 chr12 49640304 49640699 -71616831 - Lx2 LINE L1 -131 6866 6464 1 963 25 65 0 0 chr12 49641302 49641348 -71616182 + AT_rich Low_complexity Low_complexity 1 46 0 1 963 329 331 130 71 chr12 49641429 49641992 -71615538 + L1M4 LINE L1 4744 5339 -807 1 963 524 238 0 45 chr12 49642552 49642728 -71614802 + Lx8 LINE L1 5251 5418 -462 1 963 1003 68 0 15 chr12 49642728 49642863 -71614667 + B1_Mus1 SINE Alu 15 147 -1 1 963 1759 330 55 36 chr12 49642869 49644164 -71613366 + Lx8 LINE L1 5463 6763 -710 1 963 1400 143 13 4 chr12 49644164 49644403 -71613127 + L1_Mus3 LINE L1 6390 6630 -8 1 963 1759 353 62 44 chr12 49644403 49644989 -71612541 + Lx8 LINE L1 6764 7349 -124 1 963 2732 66 15 5 chr12 49644983 49645378 -71612152 + Lx3A LINE L1 6083 6481 -500 1 963 694 154 40 7 chr12 49645378 49645528 -71612002 + Lx3A LINE L1 6825 6979 -2 1 963 22 0 0 0 chr12 49645529 49645551 -71611979 + AT_rich Low_complexity Low_complexity 1 22 0 1 963 23 0 0 0 chr12 49645636 49645659 -71611871 + AT_rich Low_complexity Low_complexity 1 23 0 1 963 452 389 7 0 chr12 49645835 49645974 -71611556 + RSINE1 SINE B4 1 140 -25 1 963 639 39 0 0 chr12 49645974 49646052 -71611478 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 963 411 132 0 0 chr12 49646100 49646168 -71611362 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 963 890 262 12 46 chr12 49646366 49646606 -71610924 + MTC LTR MaLR 1 232 -189 1 963 252 0 0 0 chr12 49648648 49648676 -71608854 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 963 426 85 0 0 chr12 49648676 49648734 -71608796 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 963 311 292 124 5 chr12 49649284 49649494 -71608036 - L1M7 LINE L1 -5923 295 61 1 963 3318 226 23 10 chr12 49649537 49650349 -71607181 + Lx3C LINE L1 6150 6972 -4 1 963 270 281 0 0 chr12 49650460 49650524 -71607006 + Lx8 LINE L1 6376 6439 -1034 1 963 14055 70 12 2 chr12 49650517 49652473 -71605057 + L1Md_F2 LINE L1 3611 5586 -297 1 963 7954 55 3 5 chr12 49652473 49653470 -71604060 + L1Md_F2 LINE L1 5587 6581 -1 1 963 252 0 0 0 chr12 49653783 49653811 -71603719 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 963 334 259 33 11 chr12 49653837 49653927 -71603603 + MTD LTR MaLR 23 114 -305 1 963 1344 194 113 36 chr12 49654008 49654497 -71603033 + RMER6C LTR ERVK 1 690 0 1 963 540 0 0 0 chr12 49654648 49654708 -71602822 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 963 23 54 0 0 chr12 49655149 49655186 -71602344 + AT_rich Low_complexity Low_complexity 1 37 0 1 963 235 309 52 31 chr12 49655302 49655399 -71602131 - B1F SINE Alu -4 145 47 1 963 310 319 113 17 chr12 49655314 49655429 -71602101 - ID_B1 SINE B4 -14 210 85 1 963 1981 145 0 40 chr12 49655637 49655961 -71601569 + RLTR10E LTR ERVK 1 311 0 1 963 19077 22 2 2 chr12 49657296 49659654 -71597876 + L1Md_T LINE L1 3230 5586 -297 1 963 8523 30 0 0 chr12 49659654 49660650 -71596880 + L1Md_T LINE L1 5587 6582 0 1 963 201 74 0 0 chr12 49660687 49660714 -71596816 + (A)n Simple_repeat Simple_repeat 1 27 0 1 963 369 0 0 0 chr12 49661265 49661306 -71596224 + (T)n Simple_repeat Simple_repeat 1 41 0 1 963 2177 250 45 21 chr12 49661306 49661979 -71595551 + Lx2B LINE L1 6181 6869 -131 1 963 394 310 34 42 chr12 49662079 49662197 -71595333 - B1F SINE Alu -5 144 28 1 963 31 0 0 0 chr12 49662222 49662253 -71595277 + AT_rich Low_complexity Low_complexity 1 31 0 1 963 762 50 0 0 chr12 49662344 49662443 -71595087 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 963 182 292 169 0 chr12 49663156 49663245 -71594285 - L3 LINE CR1 -428 4061 3958 1 963 1097 47 13 7 chr12 49663673 49663817 -71593713 - L1_Mus1 LINE L1 -238 6329 6184 1 963 1627 90 68 0 chr12 49663817 49663970 -71593560 + L1_Mus1 LINE L1 6318 6470 -97 1 963 237 33 0 0 chr12 49663970 49664000 -71593530 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 963 1627 90 68 0 chr12 49664000 49664080 -71593450 + L1_Mus1 LINE L1 6471 6566 -1 1 963 189 121 0 0 chr12 49665408 49665441 -71592089 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 1 963 340 285 86 14 chr12 49666209 49666348 -71591182 + L1MDa LINE L1 1241 1389 -5244 1 963 292 277 38 38 chr12 49666497 49666681 -71590849 + L1_Rod LINE L1 1535 1718 -4129 2 963 434 125 0 0 chr12 49666953 49667017 -71590513 - L1_Mur2 LINE L1 -1637 4240 4177 2 963 704 179 0 0 chr12 49667016 49667156 -71590374 + L1_Mur2 LINE L1 4239 4378 -1499 2 963 491 258 0 0 chr12 49667156 49667249 -71590281 - MYSERV6-int LTR ERVK -3219 5740 5648 2 963 2970 165 14 30 chr12 49667252 49667846 -71589684 - MYSERV6-int LTR ERVK -7224 1735 1152 2 963 1320 257 31 137 chr12 49667854 49668395 -71589135 + RLTR19C LTR ERVK 18 501 -5 2 963 456 176 0 0 chr12 49668402 49668493 -71589037 - MYSERV6-int LTR ERVK -7807 1152 1062 2 963 7336 120 5 15 chr12 49668493 49670046 -71587484 - L1_Mus3 LINE L1 -5 6633 5106 2 963 5901 152 6 28 chr12 49670044 49671132 -71586398 + L1_Mus3 LINE L1 4007 5070 -813 2 963 3778 152 54 1 chr12 49671151 49671817 -71585713 - MYSERV6-int LTR ERVK -7910 1049 349 2 963 282 29 0 0 chr12 49671818 49671853 -71585677 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 963 1358 224 31 0 chr12 49671853 49672139 -71585391 - MYSERV6-int LTR ERVK -8663 296 2 2 963 1894 222 89 12 chr12 49672155 49672583 -71584947 - RMER6B LTR ERVK 0 461 1 2 963 456 204 40 20 chr12 49672583 49672665 -71584865 - B2_Mm2 SINE B2 -110 85 2 2 963 219 302 11 23 chr12 49673160 49673248 -71584282 + CT-rich Low_complexity Low_complexity 5 91 0 2 963 28 48 0 0 chr12 49673272 49673314 -71584216 + AT_rich Low_complexity Low_complexity 1 42 0 2 963 6658 123 45 2 chr12 49673788 49674799 -71582731 - Lx LINE L1 -6 6648 5594 2 963 3245 195 12 3 chr12 49674796 49675443 -71582087 + L1_Mm LINE L1 4742 5394 -489 2 963 762 113 0 0 chr12 49675463 49675578 -71581952 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 2 963 207 0 0 0 chr12 49675604 49675627 -71581903 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 963 1014 62 46 0 chr12 49675629 49675759 -71581771 - B1_Mm SINE Alu -11 136 1 2 964 249 98 0 0 chr12 49676619 49676660 -71580870 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 964 221 77 0 49 chr12 49676675 49676716 -71580814 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 2 964 24 0 0 0 chr12 49676800 49676824 -71580706 + AT_rich Low_complexity Low_complexity 1 24 0 2 964 480 256 2 17 chr12 49677251 49677422 -71580108 - Lx2B LINE L1 -13 6987 6850 2 964 302 340 40 0 chr12 49678433 49678533 -71578997 - HAL1-3A_ME LINE L1 -471 2387 2284 2 964 966 66 88 0 chr12 49678551 49678687 -71578843 - B1_Mus1 SINE Alu 0 148 1 2 964 471 287 141 18 chr12 49679011 49679238 -71578292 - ORR1D1 LTR MaLR -9 365 111 2 964 21 0 0 0 chr12 49679649 49679670 -71577860 + AT_rich Low_complexity Low_complexity 1 21 0 2 964 188 213 45 76 chr12 49679760 49679826 -71577704 + L3 LINE CR1 830 893 -3596 2 964 250 178 0 0 chr12 49679952 49679997 -71577533 + L1_Mur1 LINE L1 707 751 -6231 2 964 11622 171 36 7 chr12 49680043 49682118 -71575412 + L1_Mur1 LINE L1 150 2793 -3093 2 964 222 91 0 0 chr12 49682118 49682151 -71575379 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2 964 11622 157 21 6 chr12 49682151 49682829 -71574701 + L1_Mur1 LINE L1 2794 3498 -2388 2 964 3435 108 63 82 chr12 49683082 49683847 -71573683 - RMER17A LTR ERVK 0 751 2 2 964 304 391 37 53 chr12 49684128 49684317 -71573213 - ORR1E LTR MaLR -110 249 64 2 964 186 133 0 0 chr12 49684528 49684558 -71572972 + (T)n Simple_repeat Simple_repeat 1 30 0 2 964 1080 62 21 7 chr12 49684558 49684703 -71572827 - B1_Mus1 SINE Alu 0 148 2 2 964 23 0 0 0 chr12 49687633 49687656 -71569874 + AT_rich Low_complexity Low_complexity 1 23 0 2 964 22 88 0 0 chr12 49688229 49688286 -71569244 + AT_rich Low_complexity Low_complexity 1 57 0 2 964 323 308 75 0 chr12 49689708 49689841 -71567689 + RMER15 LTR ERVL 416 558 -17 2 964 378 0 0 0 chr12 49690993 49691035 -71566495 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 964 311 328 58 16 chr12 49691042 49691163 -71566367 - B4 SINE B4 -44 248 123 2 964 315 49 0 0 chr12 49693031 49693072 -71564458 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 964 25 51 0 0 chr12 49693626 49693665 -71563865 + AT_rich Low_complexity Low_complexity 1 39 0 2 964 367 283 68 42 chr12 49693961 49694153 -71563377 - L1M5 LINE L1 -2261 3885 3689 2 964 264 59 0 0 chr12 49695202 49695236 -71562294 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2 964 825 256 134 11 chr12 49695642 49695926 -71561604 + RMER21B LTR ERV1 247 565 -277 2 964 226 306 0 31 chr12 49695981 49696045 -71561485 + RMER21B LTR ERV1 774 835 -112 2 964 2015 210 80 56 chr12 49696052 49696551 -71560979 - RMER15 LTR ERVL -61 514 4 2 964 24 0 0 0 chr12 49697072 49697096 -71560434 + AT_rich Low_complexity Low_complexity 1 24 0 2 964 317 331 38 0 chr12 49697337 49697470 -71560060 - B1F2 SINE Alu -11 138 1 2 964 351 335 93 62 chr12 49697554 49697748 -71559782 - B3 SINE B2 -14 202 3 2 964 610 332 0 0 chr12 49697928 49698124 -71559406 - Lx8 LINE L1 -860 6613 6418 2 964 28 0 0 0 chr12 49698417 49698445 -71559085 + AT_rich Low_complexity Low_complexity 1 28 0 2 964 2714 149 18 2 chr12 49698991 49699441 -71558089 + Lx3A LINE L1 6525 6981 0 2 964 23 33 0 0 chr12 49699441 49699471 -71558059 + AT_rich Low_complexity Low_complexity 1 30 0 2 964 375 23 0 0 chr12 49699606 49699650 -71557880 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 964 909 300 57 15 chr12 49700697 49700942 -71556588 - MTD LTR MaLR -1 418 160 2 964 267 31 0 0 chr12 49700942 49700974 -71556556 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 964 909 300 57 15 chr12 49700974 49700992 -71556538 - MTD LTR MaLR -260 159 144 2 964 3905 121 3 15 chr12 49700992 49701934 -71555596 - Lx LINE L1 -536 6118 5193 2 964 1905 133 12 43 chr12 49701933 49702255 -71555275 + Lx LINE L1 6308 6619 -35 2 964 761 151 0 0 chr12 49702260 49702386 -71555144 - L1_Mur2 LINE L1 -678 5199 5074 2 964 1050 336 23 13 chr12 49704860 49705258 -71552272 + Lx9 LINE L1 6393 6794 -850 2 964 621 240 250 0 chr12 49705350 49705542 -71551988 + RMER6-int LTR ERVK 1021 1260 -1917 2 964 341 211 0 0 chr12 49705559 49705616 -71551914 + LSU-rRNA_Hsa rRNA rRNA 1781 1837 -3198 2 964 2659 164 75 56 chr12 49705616 49706204 -71551326 + RMER6-int LTR ERVK 2579 3177 0 2 964 2669 191 117 13 chr12 49706208 49706825 -71550705 + RMER6C LTR ERVK 2 682 -8 2 964 634 336 51 38 chr12 49706870 49707274 -71550256 + Lx9 LINE L1 6887 7425 -219 2 964 505 161 22 22 chr12 49707403 49707492 -71550038 + RMER2 LTR ERV1 1 89 -478 2 964 471 290 109 47 chr12 49707487 49707679 -71549851 + RMER2 LTR ERV1 306 509 -58 2 964 4236 73 26 28 chr12 49707985 49708588 -71548942 - L1_Mus2 LINE L1 0 6566 5965 2 964 3660 66 0 0 chr12 49708812 49709294 -71548236 - L1_Mm LINE L1 -2740 3143 2662 2 964 2903 39 3 3 chr12 49709304 49709662 -71547868 + L1Md_F2 LINE L1 6225 6582 0 2 964 376 340 37 22 chr12 49710197 49710468 -71547062 + MuRRS-int LTR ERV1 1180 1454 -3609 2 964 428 293 50 45 chr12 49710644 49710838 -71546692 + MuRRS-int LTR ERV1 1822 2195 -5361 2 964 356 342 40 41 chr12 49711262 49711522 -71546008 + RLTR6-int LTR ERV1 3876 4155 -3451 2 964 407 315 35 15 chr12 49711534 49711734 -71545796 + RLTR6-int LTR ERV1 4344 4547 -3231 2 964 1314 287 3 0 chr12 49712124 49712493 -71545037 + MuRRS4-int LTR ERV1 3546 3915 -1148 2 964 1619 263 69 61 chr12 49713021 49713527 -71544003 + RMER2 LTR ERV1 1 510 -57 2 964 582 265 46 72 chr12 49713588 49713908 -71543622 - RMER2 LTR ERV1 -153 414 1 2 964 393 75 0 0 chr12 49713938 49713991 -71543539 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 964 225 162 44 0 chr12 49713991 49714059 -71543471 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 964 191 125 0 40 chr12 49714320 49714370 -71543160 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2 964 364 318 46 17 chr12 49714461 49714634 -71542896 - MLT1C LTR MaLR -245 222 45 2 964 25 75 0 0 chr12 49714799 49714852 -71542678 + AT_rich Low_complexity Low_complexity 1 53 0 2 964 1078 290 49 34 chr12 49715156 49715554 -71541976 + MTE2a LTR MaLR 6 419 0 2 964 783 262 107 53 chr12 49715719 49716307 -71541223 - L1MA6 LINE L1 -344 5956 5337 2 964 200 188 0 0 chr12 49716442 49716474 -71541056 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 964 189 329 36 12 chr12 49716805 49716888 -71540642 + MER5B DNA MER1_type 2 86 -92 2 964 225 227 76 0 chr12 49717240 49717306 -71540224 + MLT2B2 LTR ERVL 5 75 -440 2 964 189 147 0 0 chr12 49717326 49717360 -71540170 + (CAT)n Simple_repeat Simple_repeat 2 35 0 2 964 1211 280 10 87 chr12 49717360 49717751 -71539779 - ORR1D2 LTR MaLR -8 362 2 2 964 492 18 0 0 chr12 49717753 49717810 -71539720 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 964 717 305 94 54 chr12 49717998 49718348 -71539182 - MLT1C LTR MaLR -103 364 1 2 964 1008 38 0 0 chr12 49719179 49719310 -71538220 - L1Md_T LINE L1 -2 6580 6450 2 964 513 325 9 9 chr12 49719384 49719595 -71537935 + B3 SINE B2 1 211 -5 2 964 202 194 28 0 chr12 49719658 49719730 -71537800 + CT-rich Low_complexity Low_complexity 3 76 0 2 964 1976 180 30 17 chr12 49719740 49720147 -71537383 - Lx4B LINE L1 -7 7051 6640 2 964 579 40 0 0 chr12 49720196 49720270 -71537260 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 964 477 0 0 0 chr12 49720270 49720322 -71537208 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 964 338 273 25 76 chr12 49720469 49720518 -71537012 + RMER15 LTR ERVL 22 66 -509 2 964 207 0 0 0 chr12 49720518 49720541 -71536989 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 964 338 273 25 76 chr12 49720541 49720610 -71536920 + RMER15 LTR ERVL 67 134 -441 2 964 3677 51 36 2 chr12 49720820 49721295 -71536235 - L1Md_F2 LINE L1 -14 6568 6078 2 964 22 0 0 0 chr12 49721566 49721588 -71535942 + AT_rich Low_complexity Low_complexity 1 22 0 2 964 452 294 79 43 chr12 49723420 49723809 -71533721 - MER67D LTR ERV1 -306 405 1 2 964 207 0 0 0 chr12 49724076 49724099 -71533431 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 964 1842 187 50 8 chr12 49725110 49725488 -71532042 - ORR1B1 LTR MaLR 0 394 1 2 964 3732 82 2 0 chr12 49725511 49726010 -71531520 + L1_Mus1 LINE L1 6067 6566 -1 2 964 210 37 0 0 chr12 49726449 49726476 -71531054 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 964 24 0 0 0 chr12 49726611 49726635 -71530895 + AT_rich Low_complexity Low_complexity 1 24 0 2 964 1109 70 6 0 chr12 49726844 49727002 -71530528 - L1Md_F2 LINE L1 -1 6581 6423 2 964 1107 91 0 0 chr12 49727003 49727146 -71530384 + L1_Mm LINE L1 5519 5661 -222 2 964 33260 64 2 8 chr12 49727143 49732020 -71525510 + L1Md_F3 LINE L1 648 5589 -297 2 964 8038 42 4 1 chr12 49732020 49733004 -71524526 + L1Md_F3 LINE L1 5590 6576 -11 2 964 29 84 0 0 chr12 49733007 49733078 -71524452 + AT_rich Low_complexity Low_complexity 1 71 0 2 964 450 209 57 0 chr12 49733127 49733232 -71524298 - URR1B DNA MER1_type -43 182 72 3 964 450 0 0 0 chr12 49734398 49734448 -71523082 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 964 225 0 0 0 chr12 49735287 49735312 -71522218 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 964 421 303 60 49 chr12 49736821 49737005 -71520525 + B3A SINE B2 13 198 0 3 964 259 229 16 0 chr12 49737676 49737737 -71519793 + L1_Rod LINE L1 5714 5775 -72 3 964 232 352 14 0 chr12 49738189 49738260 -71519270 - ID SINE ID -150 74 3 3 964 522 0 0 0 chr12 49739100 49739158 -71518372 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 964 542 355 57 38 chr12 49740090 49740509 -71517021 + Lx9 LINE L1 6947 7373 -271 3 964 333 0 0 0 chr12 49740583 49740620 -71516910 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 964 226 219 15 130 chr12 49740622 49740753 -71516777 + Lx9 LINE L1 7514 7629 -15 3 964 1140 106 0 6 chr12 49740807 49740969 -71516561 + B2_Mm2 SINE B2 2 162 -33 3 964 450 0 0 0 chr12 49740969 49741019 -71516511 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 3 964 953 178 55 6 chr12 49741019 49741037 -71516493 + B2_Mm1t SINE B2 173 190 -3 3 964 607 263 142 6 chr12 49741712 49741895 -71515635 - Lx5 LINE L1 -3 7047 6856 3 964 746 132 105 0 chr12 49742005 49742157 -71515373 + L1_Mus3 LINE L1 6471 6638 0 3 964 25 0 0 0 chr12 49743581 49743606 -71513924 + AT_rich Low_complexity Low_complexity 1 25 0 3 964 480 35 0 0 chr12 49743935 49743993 -71513537 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 964 22 0 0 0 chr12 49744101 49744123 -71513407 + AT_rich Low_complexity Low_complexity 1 22 0 3 964 408 267 106 53 chr12 49744508 49744678 -71512852 - B3 SINE B2 -1 215 37 3 964 417 16 48 0 chr12 49744961 49745023 -71512507 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 3 964 433 336 73 36 chr12 49745185 49745404 -71512126 - RMER15 LTR ERVL -13 562 336 3 964 399 296 53 12 chr12 49747409 49747580 -71509950 + B3A SINE B2 3 180 -18 3 964 315 161 0 0 chr12 49748324 49748380 -71509150 + (TTA)n Simple_repeat Simple_repeat 3 58 0 3 964 261 383 57 12 chr12 49749447 49749693 -71507837 + RMER12 LTR ERVK 712 968 -354 3 964 432 55 0 0 chr12 49749845 49749900 -71507630 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 964 295 253 12 0 chr12 49750347 49750430 -71507100 - L1M1 LINE L1 -475 5828 5745 3 964 748 279 49 25 chr12 49750428 49750821 -71506709 + L1_Mur3 LINE L1 5306 5674 -206 3 964 6518 158 47 47 chr12 49751017 49751869 -71505661 + RLTR21 LTR ERVK 8 880 -692 3 964 1036 112 6 11 chr12 49751869 49752050 -71505480 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 964 1032 91 28 0 chr12 49752057 49752200 -71505330 - B1_Mus1 SINE Alu 0 148 2 3 964 6518 158 47 47 chr12 49752200 49752638 -71504892 + RLTR21 LTR ERVK 881 1306 -266 3 964 258 218 55 0 chr12 49752649 49752704 -71504826 + RLTR21 LTR ERVK 1056 1113 -459 3 964 1859 185 146 9 chr12 49752711 49752851 -71504679 + RLTR21 LTR ERVK 1056 1243 -329 3 964 303 93 0 0 chr12 49752851 49752894 -71504636 + (TATG)n Simple_repeat Simple_repeat 4 46 0 3 964 1859 185 146 9 chr12 49752894 49752942 -71504588 + RLTR21 LTR ERVK 1244 1301 -271 3 964 193 57 57 0 chr12 49752942 49752977 -71504553 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 964 1859 185 146 9 chr12 49752977 49753219 -71504311 + RLTR21 LTR ERVK 1302 1544 -28 3 964 24 0 0 0 chr12 49754031 49754055 -71503475 + AT_rich Low_complexity Low_complexity 1 24 0 3 964 249 98 0 0 chr12 49754237 49754278 -71503252 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 964 193 146 73 0 chr12 49754279 49754334 -71503196 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 3 964 228 200 0 0 chr12 49754576 49754626 -71502904 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 964 195 69 0 0 chr12 49755458 49755487 -71502043 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 3 964 952 228 28 9 chr12 49756405 49756622 -71500908 - MTD LTR MaLR 0 419 199 3 964 5685 74 1 1 chr12 49756668 49757412 -71500118 - L1_Mus1 LINE L1 -1 6566 5823 3 964 399 250 65 144 chr12 49757412 49757627 -71499903 - MTD LTR MaLR -221 200 3 3 964 662 300 120 144 chr12 49757861 49758235 -71499295 + MTEa LTR MaLR 3 367 -12 3 964 2777 284 100 68 chr12 49758237 49758723 -71498807 + MMAR1 DNA Mariner 1 511 -775 3 964 5772 115 23 11 chr12 49758723 49758938 -71498592 + Lx3_Mus LINE L1 6110 6334 -675 3 964 2766 42 30 0 chr12 49758938 49759274 -71498256 - ORR1A1 LTR MaLR 0 346 1 3 964 5772 115 23 11 chr12 49759274 49759940 -71497590 + Lx3_Mus LINE L1 6335 7001 -8 3 964 2777 284 100 68 chr12 49759940 49760695 -71496835 + MMAR1 DNA Mariner 512 1281 -5 3 964 999 254 106 23 chr12 49761742 49762092 -71495438 - MTE2a LTR MaLR 0 379 1 3 964 7762 83 29 0 chr12 49762838 49764655 -71492875 - L1_Mus1 LINE L1 0 6567 4690 3 964 38230 53 22 16 chr12 49765986 49772395 -71485135 - L1Md_A LINE L1 -1 6581 133 3 964 288 265 0 24 chr12 49772680 49772765 -71484765 + CT-rich Low_complexity Low_complexity 2 84 0 3 964 2006 200 72 39 chr12 49773703 49774188 -71483342 - RLTR16 LTR ERVK -4 501 1 3 964 21 0 0 0 chr12 49774275 49774296 -71483234 + AT_rich Low_complexity Low_complexity 1 21 0 3 964 567 244 195 5 chr12 49774444 49774629 -71482901 - RMER20B LTR ERVK -220 407 188 3 964 417 330 99 16 chr12 49775591 49775773 -71481757 - B3A SINE B2 -1 197 1 3 964 1788 183 80 25 chr12 49776537 49776902 -71480628 - ORR1B1 LTR MaLR -8 386 2 3 964 183 100 0 0 chr12 49777518 49777548 -71479982 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 964 251 307 64 63 chr12 49777860 49778019 -71479511 - MIR SINE MIR -54 208 53 3 964 369 0 0 0 chr12 49778222 49778263 -71479267 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 964 207 0 0 0 chr12 49778263 49778285 -71479245 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 964 359 322 17 22 chr12 49778285 49778466 -71479064 + CT-rich Low_complexity Low_complexity 1 180 0 3 964 398 69 17 0 chr12 49778605 49778663 -71478867 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 964 307 41 41 0 chr12 49778729 49778778 -71478752 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 964 423 38 0 0 chr12 49778778 49778830 -71478700 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 964 270 0 0 0 chr12 49779681 49779711 -71477819 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 3 964 486 0 0 0 chr12 49780709 49780763 -71476767 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 964 464 184 7 0 chr12 49780945 49781097 -71476433 + CT-rich Low_complexity Low_complexity 2 154 0 3 964 3104 213 72 13 chr12 49782017 49782701 -71474829 + ORR1B2-int LTR MaLR 784 1507 -2 3 964 1549 213 9 41 chr12 49782703 49783041 -71474489 + ORR1B2 LTR MaLR 1 327 -40 3 964 702 257 53 19 chr12 49783444 49783650 -71473880 + RLTR28B LTR ERVL 1 213 -268 3 964 2769 185 15 0 chr12 49783668 49784143 -71473387 + RMER13B LTR ERVK 1 482 -426 3 964 1414 85 209 0 chr12 49784390 49784625 -71472905 - L1_Mus3 LINE L1 -6 6632 6349 3 964 336 48 0 0 chr12 49785906 49785948 -71471582 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 964 337 273 129 36 chr12 49786389 49786613 -71470917 + L1M5 LINE L1 3013 3257 -2889 3 964 266 303 13 0 chr12 49786985 49787061 -71470469 - RSINE1 SINE B4 -7 158 82 3 964 313 295 86 63 chr12 49787513 49787575 -71469955 + HAL1-2a_MD LINE L1 714 788 -2236 3 964 1134 61 0 7 chr12 49787575 49787724 -71469806 + B1_Mus1 SINE Alu 1 148 0 3 964 313 295 86 63 chr12 49787724 49787882 -71469648 + HAL1-2a_MD LINE L1 789 938 -2086 3 964 662 143 0 8 chr12 49788433 49788553 -71468977 + (TA)n Simple_repeat Simple_repeat 2 120 0 3 964 26 0 0 0 chr12 49788618 49788644 -71468886 + AT_rich Low_complexity Low_complexity 1 26 0 3 964 500 168 24 8 chr12 49789101 49789227 -71468303 + L1_Mur1 LINE L1 1148 1275 -5709 3 964 4446 199 81 34 chr12 49789216 49789387 -71468143 + L1_Mur1 LINE L1 1879 2053 -3824 3 964 387 0 0 0 chr12 49789387 49789430 -71468100 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 964 4446 199 81 34 chr12 49789430 49790511 -71467019 + L1_Mur1 LINE L1 2054 3189 -2688 3 964 6302 92 53 11 chr12 49790512 49791469 -71466061 + RLTR13D4 LTR ERVK 1 997 -36 3 964 4492 161 34 92 chr12 49791644 49792696 -71464834 + L1_Mur1 LINE L1 3184 4174 -1703 3 964 308 111 0 18 chr12 49792692 49792747 -71464783 - Lx2A LINE L1 -23 6985 6932 3 964 473 172 40 0 chr12 49792748 49792847 -71464683 - Lx2A LINE L1 -32 6976 6874 3 964 2596 162 11 0 chr12 49792839 49793290 -71464240 - L1_Mur2 LINE L1 -626 5251 4796 3 964 4329 226 59 8 chr12 49793285 49794333 -71463197 + Lx4B LINE L1 5950 7051 -7 3 964 1997 244 16 7 chr12 49794850 49795299 -71462231 - MT2A LTR ERVL -72 461 9 3 964 965 198 29 25 chr12 49796850 49797089 -71460441 + L1_Mur1 LINE L1 4296 4535 -1345 3 964 1065 85 0 0 chr12 49797094 49797235 -71460295 + B1_Mus2 SINE Alu 1 141 -6 3 964 441 0 0 0 chr12 49797237 49797286 -71460244 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 3 964 1342 227 37 118 chr12 49797620 49797869 -71459661 - RLTR14 LTR ERV1 0 382 161 3 964 285 29 0 0 chr12 49797869 49797903 -71459627 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 964 1342 227 37 118 chr12 49797903 49798033 -71459497 - RLTR14 LTR ERV1 -222 160 34 3 964 258 224 0 30 chr12 49799153 49799228 -71458302 + L1MC4 LINE L1 7979 8042 0 3 964 26 30 0 0 chr12 49799246 49799279 -71458251 + AT_rich Low_complexity Low_complexity 1 33 0 3 964 224 301 53 97 chr12 49799733 49799847 -71457683 - PB1D10 SINE Alu -8 109 1 3 964 493 283 26 52 chr12 49799847 49799912 -71457618 - ID SINE ID -144 80 20 3 964 416 128 13 0 chr12 49800189 49800267 -71457263 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 964 258 105 0 0 chr12 49800387 49800425 -71457105 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 3 964 596 297 7 0 chr12 49800531 49800669 -71456861 + RSINE1 SINE B4 1 139 -26 3 964 387 0 0 0 chr12 49800670 49800713 -71456817 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 964 26 88 0 0 chr12 49801670 49801738 -71455792 + AT_rich Low_complexity Low_complexity 1 68 0 3 964 294 274 12 12 chr12 49802317 49802402 -71455128 - B3 SINE B2 -9 207 123 3 964 273 244 66 11 chr12 49802527 49802618 -71454912 + L1MEg LINE L1 1043 1138 -4946 3 964 6856 71 25 3 chr12 49802705 49803630 -71453900 + L1_Mus1 LINE L1 5651 6567 0 3 964 217 132 0 0 chr12 49803633 49803671 -71453859 + (A)n Simple_repeat Simple_repeat 1 38 0 3 964 2547 195 6 2 chr12 49804314 49804845 -71452685 - Lx6 LINE L1 -1562 5898 5385 4 964 354 138 0 0 chr12 49805010 49805068 -71452462 + (TAA)n Simple_repeat Simple_repeat 1 58 0 4 964 5749 172 69 5 chr12 49805572 49807273 -71450257 + Lx2A1 LINE L1 4689 6541 -467 4 120 1090 139 4 55 chr12 49807270 49807506 -71450024 + Lx2A1 LINE L1 6726 6949 -59 4 965 3284 38 5 2 chr12 49808375 49808770 -71448760 + MTA_Mm LTR MaLR 1 396 0 4 965 308 254 88 26 chr12 49809115 49809228 -71448302 + PB1D7 SINE Alu 1 120 0 4 965 180 179 0 0 chr12 49810178 49810217 -71447313 + GA-rich Low_complexity Low_complexity 2 40 0 4 965 418 223 30 76 chr12 49810365 49810496 -71447034 + MT2B LTR ERVL 152 276 -325 4 965 914 90 23 0 chr12 49810387 49810520 -71447010 + B1_Mus2 SINE Alu 12 147 0 4 965 358 198 45 33 chr12 49811201 49811291 -71446239 + L1M2 LINE L1 4602 4695 -1448 4 965 838 231 47 28 chr12 49811297 49811511 -71446019 + L1_Rod LINE L1 4927 5144 -703 4 965 4607 115 8 1 chr12 49811544 49812213 -71445317 + Lx LINE L1 5973 6645 -9 4 965 658 340 42 51 chr12 49813353 49813688 -71443842 - L3 LINE CR1 -370 4119 3788 4 965 26 30 0 0 chr12 49815943 49815976 -71441554 + AT_rich Low_complexity Low_complexity 1 33 0 4 965 946 87 0 20 chr12 49816015 49816167 -71441363 + L1Md_T LINE L1 6434 6582 0 4 965 1286 274 38 32 chr12 49816996 49817366 -71440164 - Lx5 LINE L1 -5 7045 6674 4 965 326 256 60 12 chr12 49817392 49817475 -71440055 + MTC LTR MaLR 263 349 -72 4 965 428 263 29 57 chr12 49817714 49817822 -71439708 - Lx9 LINE L1 -34 7610 7505 4 965 423 0 0 0 chr12 49817822 49817869 -71439661 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 965 428 263 29 57 chr12 49817869 49817970 -71439560 - Lx9 LINE L1 -140 7504 7407 4 965 1202 280 27 50 chr12 49818412 49818750 -71438780 + MTD LTR MaLR 33 362 -57 4 965 378 333 56 0 chr12 49818986 49819148 -71438382 - MTE2b LTR MaLR 0 379 209 4 965 702 269 34 29 chr12 49819133 49819413 -71438117 - ORR1B1 LTR MaLR -96 298 1 4 965 468 303 78 12 chr12 49819413 49819578 -71437952 - MTE2b LTR MaLR -171 208 33 4 965 368 370 70 8 chr12 49820143 49820399 -71437131 + Lx9 LINE L1 7073 7344 -300 4 965 22 35 0 0 chr12 49820896 49820925 -71436605 + AT_rich Low_complexity Low_complexity 1 29 0 4 965 379 345 58 37 chr12 49821313 49821663 -71435867 + LTR69 LTR ERVL 105 503 -85 4 965 2340 132 78 12 chr12 49821847 49822269 -71435261 + L1_Mus4 LINE L1 6187 6636 0 4 965 21 36 0 0 chr12 49822434 49822462 -71435068 + AT_rich Low_complexity Low_complexity 1 28 0 4 965 496 320 34 0 chr12 49823427 49823633 -71433897 - B3 SINE B2 -3 213 1 4 965 186 360 34 23 chr12 49824543 49824631 -71432899 - MIRb SINE MIR -117 151 63 4 965 231 36 0 0 chr12 49824816 49824844 -71432686 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 4 965 406 194 175 0 chr12 49826507 49826610 -71430920 - Lx5 LINE L1 -11 7039 6919 4 965 1966 137 6 59 chr12 49826705 49827046 -71430484 - ORR1A2 LTR MaLR 0 327 5 4 965 1794 264 83 6 chr12 49827598 49828105 -71429425 + Lx9 LINE L1 6600 7145 -499 4 965 477 0 0 0 chr12 49828105 49828158 -71429372 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 965 370 209 60 9 chr12 49828158 49828274 -71429256 + Lx9 LINE L1 7518 7639 -5 4 965 360 119 0 0 chr12 49828294 49828353 -71429177 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 965 664 250 34 21 chr12 49828354 49828531 -71428999 - ORR1D1 LTR MaLR -199 185 1 4 965 2138 158 209 2 chr12 49828607 49829100 -71428430 + RMER6C LTR ERVK 96 690 0 4 965 224 365 12 0 chr12 49829100 49829185 -71428345 - PB1D10 SINE Alu -11 106 21 4 965 37 0 0 0 chr12 49829659 49829696 -71427834 + AT_rich Low_complexity Low_complexity 1 37 0 4 965 22 0 0 0 chr12 49830369 49830391 -71427139 + AT_rich Low_complexity Low_complexity 1 22 0 4 965 26 50 0 0 chr12 49830589 49830629 -71426901 + AT_rich Low_complexity Low_complexity 1 40 0 4 965 442 133 33 55 chr12 49831142 49831325 -71426205 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 4 965 357 185 49 0 chr12 49831330 49831411 -71426119 + (CAGA)n Simple_repeat Simple_repeat 2 86 0 4 965 294 174 209 55 chr12 49832183 49832260 -71425270 + RLTR20C LTR ERVK 1 96 -445 4 965 1623 69 74 0 chr12 49832260 49832491 -71425039 + L1_Mus1 LINE L1 6320 6567 0 4 965 294 174 209 55 chr12 49832491 49832504 -71425026 + RLTR20C LTR ERVK 97 105 -436 4 965 1234 20 0 0 chr12 49832512 49832659 -71424871 + B1_Mm SINE Alu 1 147 0 4 965 201 74 0 0 chr12 49832671 49832698 -71424832 + (A)n Simple_repeat Simple_repeat 1 27 0 4 965 2914 63 0 5 chr12 49832718 49833175 -71424355 - L1_Mus1 LINE L1 -613 5954 5500 4 965 1429 73 122 0 chr12 49833175 49833380 -71424150 + L1_Mus1 LINE L1 6337 6566 -1 4 965 1619 210 68 34 chr12 49833388 49833706 -71423824 + RLTR20C LTR ERVK 107 432 -102 4 965 492 106 0 0 chr12 49833706 49833791 -71423739 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 965 1619 210 68 34 chr12 49833791 49833886 -71423644 + RLTR20C LTR ERVK 433 533 -1 4 965 248 232 86 102 chr12 49833888 49834075 -71423455 - L1M2 LINE L1 -3720 3125 2942 4 965 483 281 91 19 chr12 49834499 49834709 -71422821 - L1M2 LINE L1 -4237 2612 2388 4 965 1448 249 87 10 chr12 49834957 49835370 -71422160 + RLTR16 LTR ERVK 1 445 -60 4 965 522 191 48 0 chr12 49835370 49835475 -71422055 - L1_Mur2 LINE L1 -281 5596 5487 4 965 680 224 58 52 chr12 49835476 49835565 -71421965 - RLTR20C LTR ERVK 0 578 492 4 965 894 10 0 0 chr12 49835565 49835668 -71421862 + (CA)n Simple_repeat Simple_repeat 2 104 0 4 965 680 224 58 52 chr12 49835668 49835733 -71421797 - RLTR20C LTR ERVK -87 491 423 4 965 383 245 68 43 chr12 49835715 49835900 -71421630 - RLTR20C LTR ERVK -224 339 152 4 965 30388 79 46 13 chr12 49835910 49841202 -71416328 - L1Md_F2 LINE L1 -13 6569 1123 4 965 1379 197 92 0 chr12 49841202 49841506 -71416024 - IAPEY3_LTR LTR ERVK 0 332 1 4 965 3802 109 89 38 chr12 49841506 49842026 -71415504 - L1Md_F2 LINE L1 -5494 1122 544 4 965 756 189 99 19 chr12 49842026 49842188 -71415342 - RLTR20C LTR ERVK -358 176 2 4 965 1059 165 11 0 chr12 49842194 49842382 -71415148 - L1_Mur2 LINE L1 -398 5479 5290 4 965 880 61 122 0 chr12 49842372 49842503 -71415027 - L1_Mus1 LINE L1 -52 6515 6369 4 965 405 0 0 0 chr12 49842609 49842654 -71414876 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 965 224 122 24 0 chr12 49844296 49844337 -71413193 + (TCTCCC)n Simple_repeat Simple_repeat 4 45 0 4 965 516 45 0 0 chr12 49844337 49844404 -71413126 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 965 494 31 0 15 chr12 49844421 49844486 -71413044 + (TAA)n Simple_repeat Simple_repeat 3 66 0 4 965 350 280 189 6 chr12 49845047 49845216 -71412314 + L1M4 LINE L1 5263 5462 -712 4 965 247 268 30 40 chr12 49845234 49845335 -71412195 + L1MB7 LINE L1 5503 5602 -731 4 965 927 374 47 24 chr12 49845399 49845933 -71411597 + Tigger7 DNA MER2_type 73 618 -1873 4 965 333 330 19 0 chr12 49845917 49846020 -71411510 + Tigger7 DNA MER2_type 2381 2485 -6 4 965 468 331 50 47 chr12 49846036 49846498 -71411032 + L1MB7 LINE L1 5612 6077 -107 4 965 23 0 0 0 chr12 49847279 49847302 -71410228 + AT_rich Low_complexity Low_complexity 1 23 0 4 965 810 201 19 57 chr12 49847368 49847579 -71409951 - MYSERV16_I-int LTR ERVK -2117 209 7 4 965 420 317 8 55 chr12 49847783 49847910 -71409620 - B1_Mur3 SINE Alu -11 138 18 4 965 26 74 0 0 chr12 49848068 49848122 -71409408 + AT_rich Low_complexity Low_complexity 1 54 0 4 965 185 365 26 70 chr12 49848298 49848413 -71409117 - L3 LINE CR1 -1375 3114 3005 4 965 2351 211 19 6 chr12 49848561 49849080 -71408450 - RLTR11A LTR ERVK 0 528 3 4 965 2287 167 75 0 chr12 49849173 49849587 -71407943 - Lx2B LINE L1 -6 6994 6550 4 965 1182 283 35 58 chr12 49849686 49849950 -71407580 - MTD LTR MaLR -29 390 138 4 965 3278 38 2 0 chr12 49849950 49850344 -71407186 - L1Md_F3 LINE L1 -14 6570 6176 4 965 1182 283 35 58 chr12 49850344 49850476 -71407054 - MTD LTR MaLR -282 137 4 4 965 352 359 57 19 chr12 49850520 49850679 -71406851 - B4 SINE B4 -127 165 1 4 965 2264 108 0 0 chr12 49852106 49852413 -71405117 - Lx LINE L1 -324 6330 6024 4 965 1814 147 50 3 chr12 49852413 49852734 -71404796 + Lx LINE L1 6319 6654 0 4 965 23 33 0 0 chr12 49852850 49852880 -71404650 + AT_rich Low_complexity Low_complexity 1 30 0 4 965 430 280 76 18 chr12 49853563 49853868 -71403662 + Lx6 LINE L1 4200 4548 -1592 4 965 252 268 62 9 chr12 49853865 49853978 -71403552 + Lx6 LINE L1 5795 5913 -1547 4 965 560 329 10 10 chr12 49854258 49854467 -71403063 + Lx8 LINE L1 6236 6444 -1029 4 965 407 339 27 5 chr12 49854521 49854708 -71402822 + Lx9 LINE L1 6678 6868 -776 4 965 794 202 91 17 chr12 49854733 49854909 -71402621 - ORR1D1 LTR MaLR 0 374 186 4 965 1543 346 49 39 chr12 49854967 49855742 -71401788 - Lx8 LINE L1 -136 7337 6555 4 965 1351 288 106 20 chr12 49856101 49856697 -71400833 + Lx9 LINE L1 6400 7046 -598 4 965 22 0 0 0 chr12 49857402 49857424 -71400106 + AT_rich Low_complexity Low_complexity 1 22 0 4 965 263 312 78 28 chr12 49857836 49857978 -71399552 - L1M6 LINE L1 -6347 149 1 4 965 2433 155 57 5 chr12 49858291 49858731 -71398799 - Lx4A LINE L1 -834 6224 5762 4 965 4239 148 110 0 chr12 49858730 49859467 -71398063 + Lx4A LINE L1 6239 7056 -2 4 965 609 365 14 19 chr12 49860534 49860741 -71396789 + B3A SINE B2 2 207 -9 4 965 25 0 0 0 chr12 49861293 49861318 -71396212 + AT_rich Low_complexity Low_complexity 1 25 0 4 965 657 283 42 55 chr12 49861318 49861752 -71395778 + L1MC LINE L1 4160 4587 -1559 4 965 565 351 94 38 chr12 49862318 49862578 -71394952 - B4A SINE B4 -15 277 1 4 965 273 143 10 0 chr12 49864541 49864643 -71392887 + (TAGA)n Simple_repeat Simple_repeat 1 103 0 4 965 279 0 0 0 chr12 49864645 49864676 -71392854 + (ATTG)n Simple_repeat Simple_repeat 3 33 0 4 965 983 147 0 6 chr12 49864679 49864857 -71392673 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 4 965 579 323 73 53 chr12 49864941 49865204 -71392326 + B4A SINE B4 2 283 -9 4 965 477 0 0 0 chr12 49865741 49865794 -71391736 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 4 965 291 233 41 0 chr12 49865947 49866020 -71391510 + Lx9 LINE L1 7383 7458 -186 4 965 413 72 29 0 chr12 49866466 49866535 -71390995 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 4 965 261 0 0 0 chr12 49866720 49866749 -71390781 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 965 6124 143 26 8 chr12 49866755 49867826 -71389704 + Lx3_Mus LINE L1 5918 7008 -1 4 965 6673 174 27 4 chr12 49867841 49868949 -71388581 + Lx LINE L1 4733 5874 -780 4 965 180 0 0 0 chr12 49868949 49868969 -71388561 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 965 6673 129 30 12 chr12 49868969 49869755 -71387775 + Lx LINE L1 5875 6653 -1 4 965 941 291 39 65 chr12 49869816 49869877 -71387653 - Lx9 LINE L1 -453 7191 7133 5 965 2394 65 0 0 chr12 49869877 49870183 -71387347 - L1_Mus1 LINE L1 0 6567 6262 5 965 941 291 39 65 chr12 49870183 49870536 -71386994 - Lx9 LINE L1 -512 7132 6788 5 965 2288 213 5 79 chr12 49870553 49871170 -71386360 - RMER6C LTR ERVK -3 687 117 5 965 854 282 88 41 chr12 49871208 49871548 -71385982 - Lx9 LINE L1 -901 6743 6388 5 965 210 105 0 0 chr12 49871649 49871687 -71385843 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 965 1527 123 0 20 chr12 49872146 49872395 -71385135 - Lx LINE L1 -6 6648 6405 5 965 22 70 0 0 chr12 49873666 49873709 -71383821 + AT_rich Low_complexity Low_complexity 1 43 0 5 965 286 296 18 44 chr12 49874804 49874917 -71382613 + MIRc SINE MIR 115 224 -44 5 965 439 333 21 7 chr12 49875762 49875904 -71381626 + B1F2 SINE Alu 6 149 0 5 965 457 318 102 120 chr12 49875962 49876344 -71381186 + MTE2b LTR MaLR 5 379 0 5 965 1025 339 67 11 chr12 49876345 49876721 -71380809 + MTE2b-int LTR MaLR 3 399 -1181 5 965 278 317 112 23 chr12 49877100 49877298 -71380232 + MTE2b-int LTR MaLR 1046 1283 -297 5 965 333 0 0 0 chr12 49877423 49877460 -71380070 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 965 2060 56 0 32 chr12 49877460 49877739 -71379791 - L1Md_F2 LINE L1 -23 6559 6290 5 965 251 29 29 0 chr12 49877734 49877768 -71379762 + L1_Mm LINE L1 3705 3739 -2144 5 965 1076 276 40 77 chr12 49877966 49878343 -71379187 - ORR1D1 LTR MaLR -10 364 2 5 965 473 324 88 55 chr12 49878356 49878594 -71378936 + MTE2a LTR MaLR 133 378 -1 5 965 1334 41 0 0 chr12 49878730 49878899 -71378631 + L1Md_A LINE L1 6413 6581 -1 5 965 4425 280 67 21 chr12 49878899 49879014 -71378516 - Lx9 LINE L1 -14 7630 7517 5 965 450 0 0 0 chr12 49879014 49879064 -71378466 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 965 4425 280 67 21 chr12 49879064 49879868 -71377662 - Lx9 LINE L1 -128 7516 6671 5 965 3992 64 4 2 chr12 49879868 49880370 -71377160 + RLTR1C LTR ERV1 1 503 0 5 965 4425 280 67 21 chr12 49880370 49880673 -71376857 - Lx9 LINE L1 -974 6670 6341 5 965 510 96 0 0 chr12 49880673 49880746 -71376784 + (CATA)n Simple_repeat Simple_repeat 2 74 0 5 965 4425 280 67 21 chr12 49880746 49881241 -71376289 - Lx9 LINE L1 -1304 6340 5834 5 965 5444 23 0 0 chr12 49881268 49882075 -71375455 - L1Md_A LINE L1 -519 6063 5257 5 965 4271 50 0 0 chr12 49882075 49882596 -71374934 + L1Md_T LINE L1 6062 6582 0 5 965 312 27 0 0 chr12 49882639 49882676 -71374854 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 965 431 217 201 7 chr12 49882694 49882838 -71374692 + RLTR25A LTR ERVK 862 1033 -70 5 965 2364 266 60 61 chr12 49882937 49883767 -71373763 - Lx9 LINE L1 -168 5679 4840 5 965 2467 88 59 3 chr12 49883767 49884107 -71373423 - RLTR10D LTR ERVK 0 359 1 5 965 2364 301 97 46 chr12 49884107 49885182 -71372348 - Lx9 LINE L1 -1015 4865 3681 5 965 1505 199 19 14 chr12 49885203 49885569 -71371961 + Lx6 LINE L1 3925 4292 -1588 5 965 5745 205 16 44 chr12 49885568 49886263 -71371267 + Lx2A1 LINE L1 4575 5265 -621 5 965 876 122 65 0 chr12 49886263 49886402 -71371128 + B1_Mus1 SINE Alu 1 148 0 5 965 1005 158 0 0 chr12 49886408 49886585 -71370945 + GA-rich Low_complexity Low_complexity 2 178 0 5 965 8246 168 11 22 chr12 49886585 49888361 -71369169 + Lx2A1 LINE L1 5266 7002 -6 5 965 620 108 0 19 chr12 49888425 49888529 -71369001 + (GAAA)n Simple_repeat Simple_repeat 4 105 0 5 965 486 129 0 0 chr12 49888528 49888613 -71368917 + (GGGA)n Simple_repeat Simple_repeat 2 86 0 5 965 3769 204 77 14 chr12 49888614 49888625 -71368905 + Lx6 LINE L1 4324 4332 -1548 5 965 1161 118 0 0 chr12 49888625 49888803 -71368727 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 965 3769 204 77 14 chr12 49888803 49889801 -71367729 + Lx6 LINE L1 4333 5397 -483 5 965 13645 120 42 36 chr12 49889809 49892447 -71365083 + L1VL2 LINE L1 397 3129 -785 5 965 279 0 0 0 chr12 49892447 49892478 -71365052 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 965 13645 106 51 42 chr12 49892478 49892792 -71364738 + L1VL2 LINE L1 3130 3460 -454 5 965 1011 112 21 7 chr12 49892792 49892936 -71364594 + B1_Mus2 SINE Alu 1 146 -1 5 965 13645 138 51 39 chr12 49892936 49893622 -71363908 + L1VL2 LINE L1 3461 4069 -1814 5 965 3888 153 79 13 chr12 49893622 49894329 -71363201 + Lx LINE L1 5884 6637 -17 5 965 289 243 67 67 chr12 49894337 49894456 -71363074 - Lx6 LINE L1 -314 5566 5448 5 965 1017 266 45 62 chr12 49894440 49894793 -71362737 + Lx6 LINE L1 5593 5939 -1521 5 965 872 230 69 18 chr12 49894799 49895016 -71362514 + ORR1C1 LTR MaLR 16 243 -135 5 965 250 281 148 67 chr12 49895019 49895137 -71362393 + Lx9 LINE L1 7257 7387 -257 5 965 1657 196 67 67 chr12 49895137 49895558 -71361972 - MTC LTR MaLR 0 421 1 5 965 250 281 148 67 chr12 49895558 49895588 -71361942 + Lx9 LINE L1 7388 7417 -227 5 965 1168 70 12 0 chr12 49895635 49895807 -71361723 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 5 965 24 67 0 0 chr12 49895908 49895953 -71361577 + AT_rich Low_complexity Low_complexity 1 45 0 5 965 455 365 11 6 chr12 49895966 49896148 -71361382 + B4 SINE B4 102 284 -8 5 965 468 200 17 17 chr12 49896746 49896919 -71360611 + CT-rich Low_complexity Low_complexity 1 173 0 5 965 347 280 20 0 chr12 49897018 49897118 -71360412 + GA-rich Low_complexity Low_complexity 3 104 0 5 965 349 291 30 30 chr12 49897143 49897274 -71360256 - Lx8 LINE L1 -235 7238 7108 5 965 375 23 0 0 chr12 49898071 49898115 -71359415 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 965 405 0 0 0 chr12 49898283 49898328 -71359202 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 965 36 82 0 0 chr12 49899336 49899421 -71358109 + AT_rich Low_complexity Low_complexity 1 85 0 5 965 226 355 55 55 chr12 49899797 49899925 -71357605 + ID_B1 SINE B4 97 224 0 5 965 237 300 0 0 chr12 49899925 49899995 -71357535 + GA-rich Low_complexity Low_complexity 3 72 0 5 965 356 320 30 49 chr12 49900720 49900884 -71356646 + RSINE1 SINE B4 5 165 0 5 965 291 157 0 0 chr12 49901054 49901105 -71356425 + CT-rich Low_complexity Low_complexity 2 52 0 5 965 1266 90 0 0 chr12 49901105 49901283 -71356247 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 5 965 213 121 0 0 chr12 49901291 49901324 -71356206 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 965 284 78 39 0 chr12 49901781 49901832 -71355698 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 965 597 64 0 0 chr12 49902852 49902930 -71354600 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 965 1120 63 0 0 chr12 49902931 49903073 -71354457 - B1_Mus2 SINE Alu -5 142 1 5 965 311 351 80 60 chr12 49903322 49903522 -71354008 + MTE2a LTR MaLR 1 204 -175 5 965 2386 207 63 44 chr12 49903739 49904402 -71353128 - Lx5 LINE L1 -590 6460 5785 5 965 292 188 0 0 chr12 49904403 49904451 -71353079 + Lx5 LINE L1 6469 6516 -534 5 965 275 235 12 57 chr12 49904452 49904581 -71352949 + Lx7 LINE L1 5748 5906 -1790 5 965 218 119 24 0 chr12 49905569 49905611 -71351919 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 965 738 278 79 76 chr12 49905764 49906176 -71351354 + MT2A LTR ERVL 5 502 -99 5 965 774 118 29 16 chr12 49906185 49906429 -71351101 + (TAGA)n Simple_repeat Simple_repeat 1 247 0 5 965 258 343 117 49 chr12 49906469 49906733 -71350797 - LTR80A LTR ERVL -233 350 69 5 965 810 75 0 0 chr12 49906891 49906997 -71350533 - B1_Mus2 SINE Alu 0 147 42 5 965 266 102 0 125 chr12 49906949 49907005 -71350525 - 4.5SRNA scRNA scRNA -8 86 38 5 965 546 0 136 0 chr12 49907009 49907163 -71350367 + (CCTG)n Simple_repeat Simple_repeat 2 176 0 5 965 259 164 55 0 chr12 49907168 49907223 -71350307 - ID_B1 SINE B4 -77 147 90 5 965 337 146 0 0 chr12 49907177 49907232 -71350298 - B1_Mur4 SINE Alu -95 55 1 5 965 456 304 97 23 chr12 49907548 49907898 -71349632 + L1M3 LINE L1 3496 3871 -2269 5 965 243 311 22 0 chr12 49908038 49908128 -71349402 + L1M3 LINE L1 4041 4132 -2011 5 965 225 331 68 43 chr12 49908316 49908477 -71349053 + LTR79 LTR ERVL 363 527 0 5 965 24 77 0 0 chr12 49908498 49908550 -71348980 + AT_rich Low_complexity Low_complexity 1 52 0 5 965 395 110 0 0 chr12 49908581 49908654 -71348876 - L1_Mus3 LINE L1 -3 6635 6563 5 965 22 56 0 0 chr12 49909260 49909296 -71348234 + AT_rich Low_complexity Low_complexity 1 36 0 5 965 1073 95 0 13 chr12 49909377 49909526 -71348004 + B1_Mus2 SINE Alu 1 147 0 5 965 192 77 0 0 chr12 49909526 49909552 -71347978 + (A)n Simple_repeat Simple_repeat 1 26 0 5 965 253 151 0 21 chr12 49909552 49909603 -71347927 - MTC LTR MaLR -371 48 3 5 965 7531 143 27 31 chr12 49909741 49911606 -71345924 - Lx2 LINE L1 -223 6774 4943 5 965 5112 202 22 25 chr12 49911805 49912040 -71345490 + L1_Mur3 LINE L1 4390 4624 -1256 5 965 1015 71 0 13 chr12 49912040 49912196 -71345334 + (CA)n Simple_repeat Simple_repeat 2 155 0 5 965 5112 202 22 25 chr12 49912196 49913167 -71344363 + L1_Mur3 LINE L1 4625 5592 -288 5 965 507 316 40 49 chr12 49913165 49913494 -71344036 - L1_Mur3 LINE L1 -271 5609 5284 5 965 3142 95 29 2 chr12 49913500 49913952 -71343578 - Lx3_Mus LINE L1 -8 7001 6538 5 965 3938 101 32 5 chr12 49913952 49914545 -71342985 + Lx3_Mus LINE L1 5930 6538 -471 5 965 1911 261 65 28 chr12 49914542 49915389 -71342141 - L1_Mur3 LINE L1 -583 5297 4420 5 965 619 209 9 0 chr12 49915389 49915504 -71342026 + RMER6D LTR ERVK 1 116 -604 5 965 2634 197 20 82 chr12 49915509 49916066 -71341464 + Lx2A1 LINE L1 6460 6987 -21 5 965 2680 78 61 2 chr12 49916066 49916272 -71341258 + BGLII LTR ERVK 3 208 -213 5 965 240 35 0 0 chr12 49916272 49916301 -71341229 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 965 2680 78 61 2 chr12 49916301 49916490 -71341040 + BGLII LTR ERVK 209 421 0 5 965 2634 197 20 82 chr12 49916490 49916517 -71341013 + Lx2A1 LINE L1 6988 7008 0 5 965 283 319 84 14 chr12 49917171 49917314 -71340216 - Lx8 LINE L1 -494 6979 6827 5 965 494 279 141 65 chr12 49917504 49917845 -71339685 + L1MA4 LINE L1 5538 5904 -396 5 965 25 31 0 0 chr12 49918066 49918098 -71339432 + AT_rich Low_complexity Low_complexity 1 32 0 5 965 25 51 0 0 chr12 49919050 49919089 -71338441 + AT_rich Low_complexity Low_complexity 1 39 0 5 965 2533 259 21 18 chr12 49919092 49919720 -71337810 - Lx6 LINE L1 -716 6744 6115 5 965 504 271 0 0 chr12 49919713 49919842 -71337688 - Lx6 LINE L1 -1508 5952 5824 5 965 977 202 34 19 chr12 49919838 49920045 -71337485 + Lx6 LINE L1 5626 5835 -45 5 965 667 324 71 23 chr12 49920159 49920680 -71336850 - L1MC2 LINE L1 -123 6221 5676 5 965 1715 204 41 3 chr12 49922169 49922509 -71335021 - Lx4B LINE L1 -377 6681 6329 5 965 1430 204 0 0 chr12 49922508 49922812 -71334718 + L1_Mur2 LINE L1 1380 1683 -4194 5 965 608 242 33 14 chr12 49922807 49923021 -71334509 - L1_Mur3 LINE L1 -3877 2003 1786 5 965 389 239 56 96 chr12 49923021 49923146 -71334384 + MT2B LTR ERVL 145 264 -337 5 965 986 63 0 0 chr12 49923054 49923181 -71334349 + B1_Mm SINE Alu 21 147 0 5 965 261 109 0 0 chr12 49923182 49923228 -71334302 + (A)n Simple_repeat Simple_repeat 1 46 0 5 965 664 236 11 0 chr12 49923253 49923431 -71334099 - L1_Mur3 LINE L1 -4199 1681 1502 5 965 189 0 0 0 chr12 49923914 49923935 -71333595 + (T)n Simple_repeat Simple_repeat 1 21 0 5 965 1686 84 57 11 chr12 49924295 49924560 -71332970 - L1_Mur1 LINE L1 -2496 3390 3114 5 965 350 21 21 0 chr12 49924597 49924644 -71332886 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 5 965 320 293 61 77 chr12 49926150 49926331 -71331199 - MTEb LTR MaLR 0 379 202 6 965 342 276 104 7 chr12 49926362 49926497 -71331033 - MT2A LTR ERVL 0 533 386 6 965 202 324 0 14 chr12 49927016 49927085 -71330445 + GA-rich Low_complexity Low_complexity 4 71 0 6 965 225 0 0 0 chr12 49928204 49928229 -71329301 + (A)n Simple_repeat Simple_repeat 1 25 0 6 965 180 0 0 0 chr12 49929218 49929238 -71328292 + (TTA)n Simple_repeat Simple_repeat 2 21 0 6 965 852 118 0 7 chr12 49929404 49929541 -71327989 + L1Md_F2 LINE L1 6434 6569 -13 6 965 2060 284 80 71 chr12 49930930 49931790 -71325740 + ORR1D1-int LTR MaLR 440 1307 -63 6 965 828 117 0 0 chr12 49931791 49931936 -71325594 + (TC)n Simple_repeat Simple_repeat 2 146 0 6 965 732 250 20 30 chr12 49931938 49932140 -71325390 + ORR1D1 LTR MaLR 175 374 0 6 965 24 0 0 0 chr12 49932487 49932511 -71325019 + AT_rich Low_complexity Low_complexity 1 24 0 6 965 228 67 0 0 chr12 49932610 49932640 -71324890 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 965 21 0 0 0 chr12 49933101 49933122 -71324408 + AT_rich Low_complexity Low_complexity 1 21 0 6 965 23 33 0 0 chr12 49933787 49933817 -71323713 + AT_rich Low_complexity Low_complexity 1 30 0 6 965 573 158 0 0 chr12 49933821 49933922 -71323608 + (TA)n Simple_repeat Simple_repeat 1 101 0 6 965 257 116 0 23 chr12 49933927 49933971 -71323559 + MMERVK10C-int LTR ERVK 7539 7581 0 6 965 1994 125 3 10 chr12 49933971 49934278 -71323252 + RLTR10E LTR ERVK 1 305 -6 6 965 315 0 0 0 chr12 49934278 49934313 -71323217 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 965 281 250 0 0 chr12 49934330 49934418 -71323112 + Lx9 LINE L1 7533 7620 -24 6 965 25 65 0 0 chr12 49935865 49935911 -71321619 + AT_rich Low_complexity Low_complexity 1 46 0 6 965 31 76 0 0 chr12 49936019 49936085 -71321445 + AT_rich Low_complexity Low_complexity 1 66 0 6 965 240 231 0 0 chr12 49936238 49936290 -71321240 + A-rich Low_complexity Low_complexity 1 52 0 6 965 485 327 31 21 chr12 49936296 49936538 -71320992 - Lx9 LINE L1 -216 7428 7095 6 965 347 315 0 0 chr12 49936713 49936805 -71320725 + Lx9 LINE L1 7148 7239 -405 6 965 3206 104 75 4 chr12 49937567 49938086 -71319444 - L1_Mur1 LINE L1 -1338 4548 3993 6 965 1128 167 174 3 chr12 49938090 49938278 -71319252 + Lx3C LINE L1 4522 4747 -1130 6 965 276 30 0 0 chr12 49938278 49938311 -71319219 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 6 965 1128 167 174 3 chr12 49938311 49938416 -71319114 + Lx3C LINE L1 4748 4864 -1013 6 120 2693 181 55 132 chr12 49938416 49939149 -71318381 + RLTR17 LTR ERVK 1 676 -16 6 966 21 0 0 0 chr12 49939162 49939183 -71318347 + AT_rich Low_complexity Low_complexity 1 21 0 6 966 6312 153 16 27 chr12 49939191 49941318 -71316212 + Lx3C LINE L1 4849 6877 -99 6 966 3313 171 33 5 chr12 49941318 49941900 -71315630 + Lx3B LINE L1 6373 6970 -3 6 966 954 90 0 0 chr12 49942565 49942699 -71314831 + (TA)n Simple_repeat Simple_repeat 2 135 0 6 966 506 279 57 16 chr12 49942708 49942901 -71314629 + Lx9 LINE L1 7284 7484 -160 6 966 235 194 30 0 chr12 49943127 49943194 -71314336 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 966 37870 30 0 1 chr12 49943945 49950572 -71306958 - L1Md_T LINE L1 0 6585 1 6 966 198 91 0 0 chr12 49950632 49950665 -71306865 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 966 184 30 61 0 chr12 49951206 49951239 -71306291 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 966 1010 234 66 22 chr12 49951450 49951721 -71305809 + MTC LTR MaLR 1 283 -138 6 966 4932 225 50 52 chr12 49952112 49952842 -71304688 + L1_Mur3 LINE L1 915 1622 -4255 6 966 388 18 35 18 chr12 49952842 49952899 -71304631 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 6 966 4932 209 46 42 chr12 49952899 49953884 -71303646 + L1_Mur3 LINE L1 1623 2631 -3246 6 966 2725 206 58 50 chr12 49953892 49954054 -71303476 - RMER20B LTR ERVK -20 607 451 6 966 7004 60 10 1 chr12 49954054 49954939 -71302591 + RLTR13B1 LTR ERVK 1 893 0 6 966 2725 206 58 50 chr12 49954939 49955378 -71302152 - RMER20B LTR ERVK -177 450 1 6 966 757 175 19 0 chr12 49955378 49955538 -71301992 + L1_Mur3 LINE L1 3011 3173 -2707 6 966 881 289 29 83 chr12 49955936 49956012 -71301518 - L1_Mur3 LINE L1 -1512 4368 4292 6 966 258 32 0 0 chr12 49956012 49956043 -71301487 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 966 881 289 29 83 chr12 49956043 49956555 -71300975 - L1_Mur3 LINE L1 -1589 4291 3813 6 966 1510 350 61 42 chr12 49956699 49957382 -71300148 + Lx8 LINE L1 6053 6755 -718 6 966 2914 69 10 2 chr12 49957382 49957775 -71299755 + MTA_Mm LTR MaLR 1 396 0 6 966 1510 350 61 42 chr12 49957775 49958318 -71299212 + Lx8 LINE L1 6756 7302 -171 6 966 1145 52 0 0 chr12 49958540 49958676 -71298854 + B1_Mus1 SINE Alu 1 136 -12 6 966 999 82 0 0 chr12 49958677 49958824 -71298706 + (TAAA)n Simple_repeat Simple_repeat 2 148 0 6 966 21 0 0 0 chr12 49959609 49959630 -71297900 + AT_rich Low_complexity Low_complexity 1 21 0 6 966 274 257 29 0 chr12 49960030 49960100 -71297430 + B3 SINE B2 101 172 -44 6 966 1023 238 52 68 chr12 49960304 49960687 -71296843 - Lx7 LINE L1 -4 7692 7316 6 966 3746 220 77 30 chr12 49960751 49960785 -71296745 - L1_Mur3 LINE L1 -568 5312 5279 6 966 638 78 10 0 chr12 49960785 49960887 -71296643 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 6 966 3746 220 77 30 chr12 49960887 49961993 -71295537 - L1_Mur3 LINE L1 -602 5278 4118 6 966 3070 211 33 28 chr12 49962103 49962985 -71294545 - L1_Mur3 LINE L1 -2397 3483 2598 6 966 1801 283 86 35 chr12 49962989 49963844 -71293686 - L1_Mur3 LINE L1 -7020 708 20 6 966 5676 69 3 0 chr12 49966176 49966926 -71290604 + L1_Mm LINE L1 4039 4790 -1093 6 966 2351 70 3 13 chr12 49966902 49967218 -71290312 + L1Md_F2 LINE L1 5808 6120 -462 6 966 434 349 51 28 chr12 49967671 49967848 -71289682 - B3A SINE B2 -14 184 4 6 966 561 99 0 0 chr12 49967856 49967937 -71289593 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 966 31 0 0 0 chr12 49968083 49968114 -71289416 + AT_rich Low_complexity Low_complexity 1 31 0 6 966 1912 282 70 42 chr12 49968957 49970023 -71287507 + Lx7 LINE L1 5085 6202 -1271 6 966 315 0 0 0 chr12 49970023 49970058 -71287472 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 966 673 355 65 62 chr12 49970058 49970337 -71287193 + Lx7 LINE L1 6203 6487 -986 6 966 243 114 0 0 chr12 49970409 49970453 -71287077 - L1MEc LINE L1 -5244 1156 1113 6 966 3675 117 26 31 chr12 49970521 49971129 -71286401 - L1_Mus3 LINE L1 -8 6630 6026 6 966 247 106 167 21 chr12 49971129 49971177 -71286353 - B2_Mm2 SINE B2 -139 56 2 6 966 261 75 0 0 chr12 49971986 49972026 -71285504 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 6 966 1095 300 53 43 chr12 49973659 49973876 -71283654 + Lx8 LINE L1 6096 6411 -1233 6 966 2278 45 17 0 chr12 49973876 49974166 -71283364 + L1Md_A LINE L1 6288 6582 0 6 966 1095 282 29 52 chr12 49974166 49974413 -71283117 + Lx8 LINE L1 6270 6658 -986 6 966 3893 91 2 22 chr12 49974400 49974984 -71282546 - Lx3_Mus LINE L1 -701 5185 4614 6 966 7738 129 30 73 chr12 49974969 49976874 -71280656 + Lx3_Mus LINE L1 5166 6996 -13 6 966 954 297 63 28 chr12 49976895 49977293 -71280237 + Lx8 LINE L1 6493 6904 -569 6 966 1202 268 29 34 chr12 49977901 49978280 -71279250 + MTEb LTR MaLR 3 379 0 6 966 22 35 0 0 chr12 49979592 49979621 -71277909 + AT_rich Low_complexity Low_complexity 1 29 0 6 966 3407 65 2 0 chr12 49980207 49980639 -71276891 - L1_Mus2 LINE L1 0 6566 6134 6 966 317 164 18 0 chr12 49981617 49981672 -71275858 - MTE2b LTR MaLR -319 60 5 6 966 377 66 16 0 chr12 49982092 49982153 -71275377 + (TTTTG)n Simple_repeat Simple_repeat 4 65 0 6 966 969 71 0 8 chr12 49982175 49982303 -71275227 - B1_Mus1 SINE Alu -1 147 21 6 966 2179 257 9 9 chr12 49982334 49982896 -71274634 + L1VL4 LINE L1 204 765 -5537 6 966 32594 75 2 24 chr12 49982891 49988117 -71269413 + L1Md_F2 LINE L1 476 5586 -297 6 966 7590 71 0 5 chr12 49988118 49989106 -71268424 + L1Md_F2 LINE L1 5588 6570 -12 6 966 242 116 23 0 chr12 49989249 49989292 -71268238 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 6 966 2433 124 9 0 chr12 49989292 49989720 -71267810 + MusHAL1 LINE L1 41 472 -2240 6 966 6408 121 4 15 chr12 49989736 49990772 -71266758 - MusHAL1 LINE L1 -995 1717 694 6 966 735 200 0 0 chr12 49990772 49990917 -71266613 + Lx2 LINE L1 3686 3830 -2056 6 966 7867 194 23 22 chr12 49990921 49992027 -71265503 + Lx2 LINE L1 4226 5333 -553 6 966 1123 77 0 0 chr12 49992027 49992170 -71265360 - B1_Mus2 SINE Alu 0 147 5 6 966 1458 113 4 17 chr12 49992171 49992405 -71265125 + L1Md_F2 LINE L1 6352 6582 0 6 966 7867 162 38 8 chr12 49992405 49994015 -71263515 + Lx2 LINE L1 5334 6988 -9 6 966 381 335 51 80 chr12 49995519 49995892 -71261638 - Lx7 LINE L1 -927 6546 6185 6 966 4198 61 39 7 chr12 49996009 49996567 -71260963 - L1Md_F2 LINE L1 -3 6579 6004 6 966 7356 75 3 20 chr12 49996572 49997922 -71259608 - L1_Mus1 LINE L1 -23 6544 5217 6 966 2805 304 42 47 chr12 49998005 49999538 -71257992 - Lx7 LINE L1 -1769 5927 4406 6 966 1041 39 0 0 chr12 49999625 49999755 -71257775 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 6 966 531 161 0 0 chr12 49999768 49999905 -71257625 + (CA)n Simple_repeat Simple_repeat 2 138 0 6 966 566 339 77 19 chr12 50000000 50000595 -71256935 - L1M2 LINE L1 -1110 5033 4404 1 966 292 321 78 40 chr12 50000592 50000962 -71256568 - L1_Mur3 LINE L1 -1594 4286 3903 2 966 669 180 0 0 chr12 50000999 50001127 -71256403 + CT-rich Low_complexity Low_complexity 1 128 0 3 966 744 218 78 70 chr12 50001159 50001401 -71256129 - Lx3B LINE L1 -4 6969 6726 4 966 1816 170 39 78 chr12 50001417 50001877 -71255653 + RMER6C LTR ERVK 111 552 -138 5 966 450 0 0 0 chr12 50001877 50001927 -71255603 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 966 394 310 56 25 chr12 50001967 50002288 -71255242 - L1_Mur3 LINE L1 -2019 3861 3531 2 966 333 68 0 0 chr12 50002443 50002487 -71255043 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 7 966 3095 223 16 3 chr12 50002511 50003158 -71254372 + Lx2B LINE L1 6200 6854 -146 8 966 249 292 19 68 chr12 50003182 50003285 -71254245 - B4A SINE B4 0 292 195 9 966 284 309 44 7 chr12 50004026 50004163 -71253367 + L1_Rod LINE L1 934 1075 -6533 1 966 252 220 9 74 chr12 50004199 50004307 -71253223 + A-rich Low_complexity Low_complexity 3 103 0 1 966 315 0 0 0 chr12 50005539 50005574 -71251956 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 966 513 0 0 0 chr12 50005574 50005630 -71251900 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 966 1018 291 62 91 chr12 50005631 50005873 -71251657 - RLTR20B3 LTR ERVK -140 437 208 1 966 3532 128 53 13 chr12 50005873 50005988 -71251542 - Lx LINE L1 -7 6647 6518 1 966 669 36 0 0 chr12 50005988 50006072 -71251458 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 966 3532 128 53 13 chr12 50006072 50006557 -71250973 - Lx LINE L1 -137 6517 6024 1 966 1018 291 62 91 chr12 50006557 50006764 -71250766 - RLTR20B3 LTR ERVK -370 207 1 1 966 678 327 56 22 chr12 50006974 50007205 -71250325 + B4A SINE B4 44 282 -10 1 966 252 0 0 0 chr12 50007224 50007252 -71250278 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1 966 573 15 0 0 chr12 50007252 50007317 -71250213 + (TC)n Simple_repeat Simple_repeat 2 67 0 1 966 540 365 16 5 chr12 50007343 50007533 -71249997 + B4A SINE B4 85 276 -16 2 966 906 313 108 58 chr12 50007961 50009004 -71248526 + L1_Rod LINE L1 1534 2614 -3266 1 966 216 0 0 0 chr12 50009004 50009028 -71248502 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 966 602 313 108 58 chr12 50009028 50009339 -71248191 + L1_Rod LINE L1 2615 2955 -2925 1 966 422 259 163 19 chr12 50009410 50009619 -71247911 + Lx9 LINE L1 6157 6395 -1249 2 966 278 231 37 24 chr12 50009629 50009793 -71247737 + GA-rich Low_complexity Low_complexity 3 168 0 2 966 968 249 16 25 chr12 50009808 50010051 -71247479 + Lx9 LINE L1 6417 6657 -987 2 966 338 276 87 5 chr12 50010059 50010204 -71247326 - L1_Mur3 LINE L1 -2026 3821 3662 2 966 192 111 0 0 chr12 50010204 50010240 -71247290 + (TTG)n Simple_repeat Simple_repeat 3 38 0 2 966 323 296 121 26 chr12 50010240 50010342 -71247188 - L1_Mur3 LINE L1 -2469 3677 3571 2 966 2018 229 39 13 chr12 50010494 50011435 -71246095 + L1_Mur2 LINE L1 797 1765 -4112 2 966 36234 43 6 11 chr12 50011438 50016823 -71240707 + L1Md_T LINE L1 168 5586 -297 2 966 8262 39 0 1 chr12 50016823 50017819 -71239711 + L1Md_T LINE L1 5587 6581 -1 2 966 27694 91 82 21 chr12 50017820 50022093 -71235437 + Lx LINE L1 966 5585 -298 2 966 6681 102 28 13 chr12 50022093 50023075 -71234455 + L1Md_F2 LINE L1 5587 6582 0 2 966 27694 110 29 10 chr12 50023075 50024202 -71233328 + Lx LINE L1 5586 6650 -4 2 966 13541 185 60 24 chr12 50024203 50024511 -71233019 + L1_Mur2 LINE L1 1754 2063 -3814 3 966 411 38 0 0 chr12 50024511 50024564 -71232966 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 966 13541 185 60 24 chr12 50024564 50027435 -71230095 + L1_Mur2 LINE L1 2064 5049 -828 3 966 2051 250 23 0 chr12 50027446 50027886 -71229644 + Lx5 LINE L1 6601 7050 0 3 966 264 187 21 32 chr12 50027934 50028028 -71229502 + GA-rich Low_complexity Low_complexity 6 98 0 3 966 308 314 90 17 chr12 50028028 50028206 -71229324 - ORR1E LTR MaLR -168 191 1 3 966 45 55 0 0 chr12 50029270 50029343 -71228187 + AT_rich Low_complexity Low_complexity 1 73 0 3 966 243 289 94 19 chr12 50029361 50029467 -71228063 - L1_Mur3 LINE L1 -855 5025 4912 3 966 23 33 0 0 chr12 50030880 50030910 -71226620 + AT_rich Low_complexity Low_complexity 1 30 0 3 966 585 28 0 0 chr12 50031011 50031082 -71226448 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 966 373 306 115 31 chr12 50031097 50031454 -71226076 - L1MA9 LINE L1 -105 6207 5821 3 966 180 111 0 0 chr12 50031549 50031576 -71225954 + (TTG)n Simple_repeat Simple_repeat 3 29 0 4 966 327 283 25 0 chr12 50031580 50031736 -71225794 - L1M2 LINE L1 -2565 3581 3414 4 966 207 0 0 0 chr12 50031764 50031787 -71225743 + (A)n Simple_repeat Simple_repeat 1 23 0 4 966 471 296 81 9 chr12 50032429 50032651 -71224879 - L1M2 LINE L1 -2769 3374 3137 4 966 372 246 16 23 chr12 50032652 50032781 -71224749 - Lx6 LINE L1 -9 7451 7324 4 966 219 36 0 0 chr12 50032782 50032810 -71224720 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 4 966 4779 165 16 8 chr12 50032890 50033789 -71223741 + MusHAL1 LINE L1 858 1763 -949 4 966 5415 142 36 20 chr12 50033789 50034733 -71222797 + Lx2 LINE L1 6039 6997 0 4 966 1245 99 15 45 chr12 50034757 50034957 -71222573 + B2_Mm2 SINE B2 2 195 0 4 966 6330 71 7 6 chr12 50035474 50036310 -71221220 - L1Md_F2 LINE L1 -4 6578 5742 4 966 360 0 0 0 chr12 50036422 50036462 -71221068 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 966 1834 267 44 19 chr12 50036473 50036859 -71220671 + Lx9 LINE L1 6316 6715 -929 5 966 2943 87 14 0 chr12 50036859 50037274 -71220256 + BGLII LTR ERVK 1 421 0 5 966 1834 267 44 19 chr12 50037274 50037429 -71220101 + Lx9 LINE L1 6716 6871 -773 5 966 2202 121 12 0 chr12 50037423 50037769 -71219761 + Lx3B LINE L1 5809 6158 -815 5 966 399 339 40 13 chr12 50037968 50038270 -71219260 + L1M1 LINE L1 5485 5794 -509 5 966 613 316 140 23 chr12 50039933 50040276 -71217254 + Lx8 LINE L1 6898 7280 -193 5 966 263 258 9 0 chr12 50040291 50040382 -71217148 + B3A SINE B2 2 147 -51 5 966 614 315 81 61 chr12 50040724 50041167 -71216363 - Lx8 LINE L1 -32 7441 6990 5 966 477 0 0 0 chr12 50041981 50042034 -71215496 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 966 890 239 220 26 chr12 50043320 50043633 -71213897 - ORR1D1 LTR MaLR 0 374 1 5 966 197 65 0 31 chr12 50044308 50044340 -71213190 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 5 966 596 285 106 6 chr12 50044719 50044953 -71212577 - MTD LTR MaLR 0 421 144 6 966 315 190 0 17 chr12 50044971 50045030 -71212500 + L1_Mur2 LINE L1 3596 3653 -2224 6 966 945 242 10 117 chr12 50045331 50045817 -71211713 + Lx5 LINE L1 862 1295 -6433 6 966 1007 173 61 17 chr12 50045803 50046033 -71211497 + Lx3C LINE L1 5996 6235 -741 6 966 864 160 67 58 chr12 50046034 50046324 -71211206 + Lx3C LINE L1 6087 6379 -594 6 966 235 254 0 0 chr12 50046317 50046384 -71211146 + Lx3B LINE L1 6904 6970 -3 6 966 6971 198 35 5 chr12 50046442 50048150 -71209380 + Lx5 LINE L1 5278 7050 0 6 966 365 151 55 0 chr12 50048215 50048288 -71209242 + Lx7 LINE L1 5809 5885 -1811 6 966 3364 256 75 59 chr12 50048286 50049505 -71208025 + Lx7 LINE L1 6459 7696 0 6 966 503 96 0 12 chr12 50049531 50049615 -71207915 + (GA)n Simple_repeat Simple_repeat 1 83 0 6 966 234 62 0 0 chr12 50049792 50049824 -71207706 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 966 25 75 0 0 chr12 50049975 50050028 -71207502 + AT_rich Low_complexity Low_complexity 1 53 0 6 966 232 300 17 0 chr12 50050128 50050188 -71207342 + ID4_ SINE ID 5 65 -18 7 966 348 333 38 38 chr12 50050297 50050456 -71207074 + RSINE1 SINE B4 5 163 -2 7 966 2021 121 31 9 chr12 50050530 50050856 -71206674 - Lx3_Mus LINE L1 -1 7008 6676 7 966 2545 72 0 0 chr12 50050857 50051178 -71206352 + Lx3_Mus LINE L1 6208 6528 -481 7 966 665 35 0 22 chr12 50051180 50051269 -71206261 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 7 966 980 132 0 0 chr12 50051276 50051420 -71206110 + Lx3_Mus LINE L1 6523 6666 -343 7 966 216 0 0 0 chr12 50051545 50051569 -71205961 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7 966 786 279 61 17 chr12 50051650 50052029 -71205501 + L1MB3 LINE L1 5765 6176 -7 7 966 328 214 0 14 chr12 50052042 50052113 -71205417 - ID2 SINE ID -13 70 1 7 966 382 278 82 0 chr12 50052536 50052633 -71204897 + PB1D7 SINE Alu 14 118 -2 7 966 312 256 23 11 chr12 50052638 50052725 -71204805 + RMER1B Other Other 225 312 -754 7 966 237 121 0 0 chr12 50052758 50052791 -71204739 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 8 966 299 203 0 13 chr12 50052791 50052866 -71204664 + CT-rich Low_complexity Low_complexity 2 75 0 8 966 672 199 7 14 chr12 50052873 50053011 -71204519 + RMER1C Other Other 1204 1340 -2 8 966 346 325 147 35 chr12 50055218 50055559 -71201971 + MER57D LTR ERV1 26 404 -7 8 966 213 121 0 0 chr12 50055617 50055650 -71201880 + (A)n Simple_repeat Simple_repeat 1 33 0 8 966 3524 100 29 0 chr12 50055905 50056684 -71200846 - L1_Mus4 LINE L1 -561 6075 5263 8 966 3225 117 59 4 chr12 50056684 50057191 -71200339 + L1_Mus4 LINE L1 6090 6624 -12 8 966 4849 112 6 0 chr12 50057208 50057902 -71199628 + Lx3_Mus LINE L1 6306 7003 -6 8 966 21 36 0 0 chr12 50057903 50057931 -71199599 + AT_rich Low_complexity Low_complexity 1 28 0 8 966 1147 136 27 0 chr12 50058039 50058223 -71199307 - B2_Mm2 SINE B2 -6 189 1 8 966 197 283 68 39 chr12 50060559 50060662 -71196868 - L2 LINE L2 -896 2523 2418 8 966 21 36 0 0 chr12 50062996 50063024 -71194506 + AT_rich Low_complexity Low_complexity 1 28 0 9 966 225 0 0 0 chr12 50063145 50063170 -71194360 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 966 633 313 123 39 chr12 50063310 50063669 -71193861 - Lx8 LINE L1 -5 7468 7080 9 966 432 0 0 0 chr12 50063808 50063856 -71193674 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 966 396 0 0 0 chr12 50063856 50063899 -71193631 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 966 493 254 55 27 chr12 50063925 50064117 -71193413 - MTEb LTR MaLR -8 371 172 9 966 882 113 0 0 chr12 50064948 50065081 -71192449 + (CA)n Simple_repeat Simple_repeat 2 134 0 9 966 21 0 0 0 chr12 50065715 50065736 -71191794 + AT_rich Low_complexity Low_complexity 1 21 0 9 966 36 23 0 0 chr12 50065783 50065826 -71191704 + AT_rich Low_complexity Low_complexity 1 43 0 9 966 787 280 91 12 chr12 50066178 50066420 -71191110 - MTEb LTR MaLR -118 261 1 9 966 304 230 45 45 chr12 50066489 50066590 -71190940 - Lx7 LINE L1 -516 5781 5650 9 966 24 0 0 0 chr12 50066840 50066864 -71190666 + AT_rich Low_complexity Low_complexity 1 24 0 1 966 687 344 31 58 chr12 50067193 50067452 -71190078 - B4A SINE B4 0 292 41 1 966 3737 134 5 7 chr12 50067544 50068132 -71189398 + L1_Mus3 LINE L1 6048 6634 -4 1 120 11046 175 6 29 chr12 50068594 50069591 -71187939 + Lx LINE L1 3757 4731 -1152 1 967 3565 75 57 10 chr12 50069591 50069646 -71187884 - L1Md_F2 LINE L1 -19 6563 6482 1 967 207 69 0 0 chr12 50069646 50069675 -71187855 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 1 967 3565 75 57 10 chr12 50069675 50070114 -71187416 - L1Md_F2 LINE L1 -101 6481 6046 1 967 303 115 0 0 chr12 50070109 50070161 -71187369 + L1Md_F2 LINE L1 6519 6570 -12 1 967 11046 144 8 18 chr12 50070161 50072103 -71185427 + Lx LINE L1 4732 6648 -6 1 967 203 54 26 51 chr12 50072362 50072401 -71185129 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 967 385 175 0 130 chr12 50072404 50072496 -71185034 - RLTR23 LTR ERV1 -343 87 8 1 967 288 350 135 34 chr12 50072672 50073115 -71184415 - L2 LINE L2 -1129 2290 1803 1 967 1089 66 0 0 chr12 50073149 50073286 -71184244 - B1_Mus1 SINE Alu -10 138 2 1 967 510 17 0 0 chr12 50073964 50074023 -71183507 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 1 967 517 303 156 42 chr12 50074142 50074410 -71183120 + L1MC LINE L1 3788 4093 -2053 1 967 219 69 0 0 chr12 50074410 50074439 -71183091 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 967 517 303 156 42 chr12 50074439 50074580 -71182950 + L1MC LINE L1 4094 4243 -1903 1 967 1299 38 0 0 chr12 50074584 50074742 -71182788 - L1_Mus1 LINE L1 0 6567 6410 1 967 675 37 0 0 chr12 50074747 50074829 -71182701 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 1 967 3537 103 71 2 chr12 50074965 50075499 -71182031 - Lx LINE L1 -482 6172 5602 1 967 3062 137 25 4 chr12 50075501 50075984 -71181546 + Lx LINE L1 6161 6653 -1 1 967 610 35 24 0 chr12 50076053 50076138 -71181392 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 1 967 289 350 73 26 chr12 50076176 50076367 -71181163 - MLT2B1 LTR ERVL -136 384 185 1 967 27 92 0 0 chr12 50076627 50076703 -71180827 + AT_rich Low_complexity Low_complexity 1 76 0 1 967 230 29 0 0 chr12 50078635 50078670 -71178860 - L1_Mus2 LINE L1 -1 6565 6531 1 967 5893 64 6 0 chr12 50078667 50079641 -71177889 + L1_Mus1 LINE L1 5358 6337 -230 1 967 1107 294 19 91 chr12 50080609 50080983 -71176547 - MTE2b LTR MaLR -15 364 18 1 967 311 289 112 12 chr12 50081070 50081231 -71176299 - L1M3 LINE L1 -545 5611 5435 1 967 355 312 48 22 chr12 50081564 50081793 -71175737 - L1M3 LINE L1 -1145 4995 4761 1 967 715 57 41 0 chr12 50081962 50082084 -71175446 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 1 967 4509 272 86 54 chr12 50082099 50082289 -71175241 - Lx6 LINE L1 -54 7406 7207 1 967 195 42 0 0 chr12 50082289 50082313 -71175217 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 967 4509 272 86 54 chr12 50082313 50083774 -71173756 - Lx6 LINE L1 -254 7206 5699 1 967 2993 92 17 22 chr12 50083774 50084238 -71173292 + L1_Mus4 LINE L1 6175 6636 0 1 967 4509 261 22 27 chr12 50084238 50084416 -71173114 - Lx6 LINE L1 -1762 5698 5516 1 967 3039 205 94 51 chr12 50084413 50084809 -71172721 - Lx6 LINE L1 -1275 4605 4168 1 967 351 0 0 0 chr12 50084809 50084848 -71172682 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 967 3039 205 94 51 chr12 50084848 50085368 -71172162 - Lx6 LINE L1 -1713 4167 3650 1 967 675 181 0 0 chr12 50085368 50085528 -71172002 + T-rich Low_complexity Low_complexity 3 162 0 1 967 1432 182 11 182 chr12 50085580 50085757 -71171773 - Lx6 LINE L1 -2205 3672 3503 1 967 2045 165 17 3 chr12 50085757 50086110 -71171420 + Lx3B LINE L1 6605 6962 -11 1 967 1432 182 11 182 chr12 50086110 50086409 -71171121 - Lx6 LINE L1 -2375 3502 3278 1 967 538 324 113 21 chr12 50086398 50087293 -71170237 + L1M2 LINE L1 4504 5435 -445 1 967 552 235 25 30 chr12 50087334 50087488 -71170042 - MT2B LTR ERVL -292 292 130 1 967 3110 155 71 0 chr12 50087428 50087975 -71169555 - ORR1A2-int LTR MaLR -1202 590 5 1 967 2340 85 25 0 chr12 50087979 50088298 -71169232 - ORR1A2 LTR MaLR 0 327 1 1 967 2069 288 48 8 chr12 50088352 50088958 -71168572 - Lx6 LINE L1 -1 7459 6830 1 967 29 47 0 0 chr12 50089064 50089107 -71168423 + AT_rich Low_complexity Low_complexity 1 43 0 1 967 937 143 7 0 chr12 50089536 50089683 -71167847 + B1_Mus1 SINE Alu 1 148 0 1 967 10192 118 72 9 chr12 50089691 50091845 -71165685 + Lx3A LINE L1 730 3019 -2867 1 967 3905 112 21 23 chr12 50091845 50092451 -71165079 - RLTR1D LTR ERV1 0 605 1 1 967 13623 167 41 44 chr12 50092452 50092921 -71164609 + Lx3A LINE L1 3008 3468 -2409 1 967 2321 71 3 3 chr12 50092921 50093231 -71164299 + L1_Mus2 LINE L1 6255 6564 -2 1 967 13623 158 63 37 chr12 50093231 50095776 -71161754 + Lx3A LINE L1 3469 6084 -897 1 967 2942 24 0 0 chr12 50095777 50096114 -71161416 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 967 55787 19 13 6 chr12 50096114 50102526 -71155004 + IAPEz-int LTR ERVK 8 6466 -15 1 967 5850 119 11 6 chr12 50102526 50102541 -71154989 + Lx3A LINE L1 6063 6077 -904 1 967 2961 21 0 0 chr12 50102541 50102878 -71154652 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 967 5850 119 11 6 chr12 50102878 50103760 -71153770 + Lx3A LINE L1 6078 6964 -17 1 967 462 36 0 0 chr12 50103762 50103818 -71153712 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 1 967 624 148 0 0 chr12 50103860 50103968 -71153562 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 1 967 917 131 7 0 chr12 50103968 50104121 -71153409 + (GAAA)n Simple_repeat Simple_repeat 4 157 0 1 967 6074 226 82 34 chr12 50104121 50105366 -71152164 - Lx7 LINE L1 -342 7354 6029 1 967 477 0 0 0 chr12 50105366 50105419 -71152111 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 967 6074 218 28 54 chr12 50105419 50105986 -71151544 - Lx7 LINE L1 -1668 6028 5478 1 967 512 343 108 44 chr12 50106992 50107450 -71150080 + L1MD3 LINE L1 6371 6865 -920 1 967 423 0 0 0 chr12 50107450 50107497 -71150033 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 967 609 319 91 55 chr12 50107497 50108060 -71149470 + L1MD3 LINE L1 6866 7674 -321 1 967 1188 235 139 0 chr12 50108060 50108392 -71149138 + MTE2b LTR MaLR 2 379 0 1 967 609 308 83 61 chr12 50108392 50108447 -71149083 + L1MD3 LINE L1 7675 7726 -269 1 967 414 0 0 0 chr12 50110384 50110430 -71147100 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 967 913 37 0 0 chr12 50110869 50110976 -71146554 + U6 snRNA snRNA 1 107 0 1 967 14215 98 5 78 chr12 50110976 50113961 -71143569 + L1Md_F2 LINE L1 89 2894 -2992 1 967 7600 57 2 1 chr12 50113961 50114928 -71142602 + L1Md_F2 LINE L1 5613 6580 -2 1 967 14215 83 3 116 chr12 50114928 50115494 -71142036 + L1Md_F2 LINE L1 2895 3454 -2432 1 967 2352 42 3 0 chr12 50115640 50115925 -71141605 + L1Md_F2 LINE L1 5303 5588 -298 1 967 8056 43 2 2 chr12 50115926 50116921 -71140609 + L1Md_F2 LINE L1 5590 6584 -1 1 967 297 51 0 0 chr12 50117242 50117281 -71140249 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 967 23 68 0 0 chr12 50117386 50117430 -71140100 + AT_rich Low_complexity Low_complexity 1 44 0 1 967 24 53 0 0 chr12 50117764 50117802 -71139728 + AT_rich Low_complexity Low_complexity 1 38 0 1 967 7238 101 26 1 chr12 50118844 50119862 -71137668 - L1_Mus4 LINE L1 -6 6630 5587 1 967 1255 134 5 0 chr12 50119873 50120075 -71137455 + L1_Mur2 LINE L1 4022 4224 -1653 1 967 837 280 82 37 chr12 50120795 50121131 -71136399 + MTD LTR MaLR 10 375 -25 1 967 3751 264 55 38 chr12 50121203 50122434 -71135096 + MTC-int LTR MaLR 5 1256 -2 1 967 1278 228 116 18 chr12 50122400 50122735 -71134795 - ORR1D1 LTR MaLR 0 374 7 1 967 1544 237 77 19 chr12 50122785 50123164 -71134366 + MTD LTR MaLR 5 405 -14 1 967 393 22 0 0 chr12 50123632 50123678 -71133852 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 967 6864 164 47 21 chr12 50123725 50126170 -71131360 - L1_Mus4 LINE L1 -6 6630 4120 1 967 847 250 126 60 chr12 50126558 50126710 -71130820 + ORR1D1 LTR MaLR 3 164 -210 1 967 513 0 0 0 chr12 50126710 50126767 -71130763 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 967 847 250 126 60 chr12 50126767 50126963 -71130567 + ORR1D1 LTR MaLR 165 374 0 1 967 342 0 0 0 chr12 50127102 50127140 -71130390 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 967 702 343 128 23 chr12 50127182 50127612 -71129918 + MTE-int LTR MaLR 81 555 -1025 1 967 1027 236 123 15 chr12 50128192 50128518 -71129012 - Lx7 LINE L1 -589 7107 6747 1 967 614 214 127 0 chr12 50128536 50128662 -71128868 - B1_Mur4 SINE Alu -7 143 2 1 967 189 0 0 0 chr12 50128825 50128846 -71128684 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 967 414 0 0 0 chr12 50130271 50130317 -71127213 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 1 967 2932 187 72 18 chr12 50131380 50132265 -71125265 + Lx3C LINE L1 4418 4975 -902 1 967 3670 139 24 5 chr12 50132272 50132976 -71124554 + Lx3C LINE L1 5278 5990 -986 1 967 2213 191 12 28 chr12 50132973 50133680 -71123850 + Lx3C LINE L1 6030 6956 -41 1 967 2877 79 22 2 chr12 50133680 50134088 -71123442 + BGLII LTR ERVK 1 416 -5 1 967 1671 186 62 7 chr12 50134089 50134487 -71123043 + Lx3C LINE L1 6505 6975 -1 1 967 235 155 34 17 chr12 50134488 50134547 -71122983 + A-rich Low_complexity Low_complexity 5 64 0 1 967 14390 212 138 26 chr12 50136238 50137406 -71120124 + Lx5 LINE L1 892 2049 -3828 1 967 351 0 0 0 chr12 50137406 50137445 -71120085 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 967 351 0 0 0 chr12 50137445 50137483 -71120047 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 967 14390 191 166 26 chr12 50137483 50140991 -71116539 + Lx5 LINE L1 2050 6191 -859 1 967 2483 180 36 38 chr12 50141630 50142155 -71115375 - RLTR28 LTR ERVL 0 524 1 1 967 786 96 0 0 chr12 50142787 50142922 -71114608 + (TTGG)n Simple_repeat Simple_repeat 1 135 0 1 967 762 201 0 26 chr12 50142933 50143086 -71114444 - B1_Mur4 SINE Alu 0 150 2 1 967 1036 112 35 105 chr12 50143700 50143900 -71113630 + B2_Mm2 SINE B2 1 186 -9 1 967 300 0 100 0 chr12 50144528 50144588 -71112942 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 967 265 320 112 32 chr12 50144747 50144934 -71112596 - Lx8 LINE L1 -65 7408 7207 1 967 1391 186 14 19 chr12 50145056 50145335 -71112195 + Lx6 LINE L1 6320 6583 -877 1 967 306 169 46 0 chr12 50145346 50145411 -71112119 - RLTR28 LTR ERVL -13 511 444 1 967 1856 195 103 0 chr12 50145408 50145757 -71111773 - RMER19B LTR ERVK -19 883 499 1 967 9136 117 6 24 chr12 50145815 50146485 -71111045 - Lx3B LINE L1 -6 6967 6302 1 967 234 0 0 0 chr12 50146485 50146511 -71111019 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 967 9136 121 6 22 chr12 50146511 50147296 -71110234 - Lx3B LINE L1 -672 6301 5530 1 967 1858 97 0 0 chr12 50147279 50147546 -71109984 + Lx3B LINE L1 5225 5491 -395 1 967 700 196 12 54 chr12 50147546 50147713 -71109817 - RMER19B LTR ERVK -742 160 1 1 967 9489 195 88 11 chr12 50147713 50148434 -71109096 + Lx6 LINE L1 3488 4226 -1654 1 967 432 0 0 0 chr12 50148434 50148482 -71109048 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 967 9489 195 88 11 chr12 50148482 50148811 -71108719 + Lx6 LINE L1 4227 4621 -1259 1 967 269 26 26 0 chr12 50148811 50148849 -71108681 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 967 9489 216 60 12 chr12 50148849 50150812 -71106718 + Lx6 LINE L1 4622 6683 -777 1 967 1597 225 25 44 chr12 50150808 50151171 -71106359 + Lx6 LINE L1 7104 7459 -1 1 967 297 0 0 0 chr12 50151697 50151730 -71105800 + (A)n Simple_repeat Simple_repeat 1 33 0 1 967 246 265 121 69 chr12 50151827 50152001 -71105529 + MIRb SINE MIR 51 233 -35 1 967 37984 30 5 0 chr12 50152150 50158958 -71098572 - L1Md_T LINE L1 0 6585 1 1 967 864 263 27 27 chr12 50159003 50159222 -71098308 + ID_B1 SINE B4 6 224 0 1 967 430 336 17 81 chr12 50159538 50159774 -71097756 - Lx8 LINE L1 -86 7387 7167 1 967 251 321 155 0 chr12 50160795 50160879 -71096651 + PB1D10 SINE Alu 2 98 -19 1 967 458 249 151 0 chr12 50161478 50161663 -71095867 + B3 SINE B2 1 213 -3 1 967 28 48 0 0 chr12 50162653 50162695 -71094835 + AT_rich Low_complexity Low_complexity 1 42 0 1 967 1998 190 85 40 chr12 50163339 50163843 -71093687 - RLTR11A2 LTR ERVK 0 527 1 2 967 419 0 20 0 chr12 50163980 50164031 -71093499 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 967 1587 224 46 37 chr12 50164284 50164827 -71092703 + Lx9 LINE L1 2494 3041 -2806 2 967 4188 136 12 30 chr12 50164829 50165571 -71091959 + L1_Mur2 LINE L1 4693 5421 -456 2 967 1741 225 32 96 chr12 50165569 50166164 -71091366 + Lx9 LINE L1 4622 5178 -669 2 967 771 254 19 43 chr12 50166549 50166759 -71090771 - RMER13A LTR ERVK -568 292 88 2 967 335 285 119 24 chr12 50166885 50167011 -71090519 + B4 SINE B4 68 205 -87 2 967 1883 239 47 33 chr12 50167037 50167759 -71089771 + Lx9 LINE L1 5274 6044 -1600 2 967 277 312 46 0 chr12 50167942 50168051 -71089479 - Lx9 LINE L1 -356 7288 7175 2 967 238 95 22 67 chr12 50168052 50168097 -71089433 - B1_Mus1 SINE Alu -81 67 25 2 967 253 160 0 0 chr12 50168107 50168157 -71089373 - L1_Rod LINE L1 -626 5221 5172 2 967 3173 100 26 11 chr12 50168256 50168720 -71088810 - Lx3A LINE L1 -2 6979 6509 2 967 1569 179 18 38 chr12 50168731 50169073 -71088457 - Lx LINE L1 -6 6648 6314 2 967 1457 93 0 0 chr12 50169073 50169267 -71088263 - Lx3_Mus LINE L1 -486 6523 6330 2 967 7147 137 21 5 chr12 50169262 50169939 -71087591 - L1_Mus1 LINE L1 -1 6566 6505 2 967 387 0 0 0 chr12 50169939 50169982 -71087548 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 967 7147 87 23 3 chr12 50169982 50171417 -71086113 - L1_Mus1 LINE L1 -63 6504 5047 2 967 2076 192 26 7 chr12 50171387 50171812 -71085718 - L1_Mur1 LINE L1 -5800 1182 750 2 967 21 0 0 0 chr12 50171835 50171856 -71085674 + AT_rich Low_complexity Low_complexity 1 21 0 2 967 398 257 24 47 chr12 50172743 50172967 -71084563 - L1M4b LINE L1 -724 6314 6095 2 967 342 326 96 42 chr12 50173109 50173609 -71083921 - L1M4b LINE L1 -1673 5333 4807 2 967 667 197 104 104 chr12 50173682 50173903 -71083627 - RMER21B LTR ERV1 -275 567 347 2 967 505 307 46 69 chr12 50174136 50174528 -71083002 - L1M4b LINE L1 -2320 4686 4304 2 967 308 311 33 0 chr12 50174781 50174903 -71082627 - L1M4b LINE L1 -5145 2189 2064 2 967 325 328 77 67 chr12 50174972 50175339 -71082191 - L1M4b LINE L1 -5028 2074 1555 2 967 1252 317 63 30 chr12 50175759 50176316 -71081214 + Lx8 LINE L1 6828 7402 -71 2 967 240 326 78 37 chr12 50176606 50176877 -71080653 - L1MB7 LINE L1 -2 6182 5901 2 967 35230 49 0 3 chr12 50177302 50182721 -71074809 + L1Md_T LINE L1 90 5589 -297 2 967 8435 33 0 0 chr12 50182721 50183717 -71073813 + L1Md_T LINE L1 5590 6585 0 2 967 875 192 0 20 chr12 50184392 50184541 -71072989 + B1_Mur3 SINE Alu 1 146 -3 2 967 27 0 0 0 chr12 50184560 50184587 -71072943 + AT_rich Low_complexity Low_complexity 1 27 0 2 967 25 65 0 0 chr12 50184768 50184814 -71072716 + AT_rich Low_complexity Low_complexity 1 46 0 2 967 23 0 0 0 chr12 50184952 50184975 -71072555 + AT_rich Low_complexity Low_complexity 1 23 0 2 967 230 336 20 34 chr12 50188529 50188677 -71068853 - L1MD3 LINE L1 -203 7792 7647 2 967 293 282 260 17 chr12 50188672 50188849 -71068681 + Lx8 LINE L1 6583 6802 -671 2 967 31 0 0 0 chr12 50189015 50189046 -71068484 + AT_rich Low_complexity Low_complexity 1 31 0 2 967 21 36 0 0 chr12 50189268 50189296 -71068234 + AT_rich Low_complexity Low_complexity 1 28 0 2 967 369 243 9 0 chr12 50189335 50189446 -71068084 - Lx9 LINE L1 -22 7622 7511 2 967 1616 204 70 6 chr12 50189457 50189999 -71067531 - Lx9 LINE L1 -179 7465 6889 2 967 32 57 0 0 chr12 50190219 50190272 -71067258 + AT_rich Low_complexity Low_complexity 1 53 0 2 967 342 0 0 0 chr12 50191839 50191877 -71065653 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 967 276 411 75 0 chr12 50192036 50192182 -71065348 + MLT1A1 LTR MaLR 100 256 -152 2 967 486 0 0 0 chr12 50192182 50192236 -71065294 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 2 967 414 265 7 7 chr12 50192467 50192604 -71064926 - L1MC3 LINE L1 -2 7783 7647 2 967 976 226 66 3 chr12 50192602 50192941 -71064589 + Lx9 LINE L1 7249 7640 -4 2 967 711 246 37 11 chr12 50193198 50193387 -71064143 - L1MC3 LINE L1 -364 7421 7228 2 967 300 70 0 0 chr12 50193915 50193958 -71063572 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 967 186 103 0 0 chr12 50194396 50194425 -71063105 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2 967 1590 97 45 7 chr12 50194465 50194734 -71062796 - Lx2A1 LINE L1 -14 6994 6716 2 967 1628 231 63 18 chr12 50194740 50195123 -71062407 + MTD LTR MaLR 20 419 0 2 967 930 236 56 10 chr12 50195364 50195561 -71061969 + B3 SINE B2 11 216 0 2 967 2346 239 19 86 chr12 50195623 50196378 -71061152 - Lx9 LINE L1 -1 7643 6940 2 967 584 267 24 29 chr12 50196447 50196617 -71060913 + Lx9 LINE L1 6306 6474 -1170 2 967 925 161 0 77 chr12 50196617 50196799 -71060731 - RLTR25B LTR ERVK -94 934 767 2 967 450 132 397 17 chr12 50196843 50196959 -71060571 + Lx2B LINE L1 6829 6988 -12 2 967 2655 150 86 17 chr12 50196959 50197496 -71060034 - RLTR25A LTR ERVK -245 858 285 2 967 1669 232 70 26 chr12 50197511 50197966 -71059564 + Lx9 LINE L1 6477 6951 -693 2 967 4611 127 108 5 chr12 50198065 50198753 -71058777 + Lx3A LINE L1 6112 6854 -127 2 967 477 0 0 0 chr12 50198753 50198806 -71058724 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 967 4611 127 108 5 chr12 50198806 50198891 -71058639 + Lx3A LINE L1 6855 6964 -17 2 967 198 0 0 0 chr12 50198891 50198913 -71058617 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 2 967 396 0 0 0 chr12 50199272 50199316 -71058214 + (CTTA)n Simple_repeat Simple_repeat 2 45 0 2 967 491 101 0 0 chr12 50199586 50199655 -71057875 - L1_Mus3 LINE L1 -619 6019 5951 2 967 3918 91 31 17 chr12 50199661 50200240 -71057290 + L1_Mus3 LINE L1 6046 6632 -6 2 120 975 275 93 3 chr12 50200525 50200835 -71056695 - ORR1D2 LTR MaLR 0 370 33 2 968 275 317 58 19 chr12 50201733 50201836 -71055694 - PB1D10 SINE Alu -6 111 5 2 968 549 164 0 0 chr12 50201841 50201957 -71055573 + CT-rich Low_complexity Low_complexity 1 116 0 2 968 218 224 31 23 chr12 50202331 50202408 -71055122 + CT-rich Low_complexity Low_complexity 1 77 0 2 968 607 298 19 19 chr12 50203377 50203586 -71053944 - B3 SINE B2 -7 209 1 2 968 22 56 0 0 chr12 50204966 50205002 -71052528 + AT_rich Low_complexity Low_complexity 1 36 0 2 968 219 114 0 0 chr12 50205551 50205586 -71051944 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 968 238 237 6 70 chr12 50207853 50207925 -71049605 + ID4_ SINE ID 17 91 -61 2 968 25 31 0 0 chr12 50210171 50210203 -71047327 + AT_rich Low_complexity Low_complexity 1 32 0 2 968 719 184 173 30 chr12 50210343 50210416 -71047114 - RMER1B Other Other -49 1017 916 2 968 377 70 0 17 chr12 50210416 50210474 -71047056 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 2 968 719 185 125 45 chr12 50210474 50210604 -71046926 - RMER1B Other Other -151 915 735 2 968 1307 180 73 0 chr12 50210591 50210836 -71046694 - Lx4B LINE L1 -384 6674 6412 2 968 231 146 0 0 chr12 50211114 50211155 -71046375 + (TTTC)n Simple_repeat Simple_repeat 1 41 0 2 968 2958 173 78 0 chr12 50211155 50211756 -71045774 - Lx LINE L1 -1 6653 6006 2 968 384 119 0 0 chr12 50211763 50211822 -71045708 + (T)n Simple_repeat Simple_repeat 1 59 0 2 968 3872 54 0 0 chr12 50211822 50212303 -71045227 - RLTR13B1 LTR ERVK -105 788 308 2 968 6672 206 34 63 chr12 50212402 50213261 -71044269 + Lx5 LINE L1 3670 4528 -1349 2 968 1089 96 7 0 chr12 50213261 50213407 -71044123 + B1_Mus2 SINE Alu 1 147 0 2 968 6672 206 34 63 chr12 50213407 50214382 -71043148 + Lx5 LINE L1 4529 5451 -426 2 968 3015 240 63 24 chr12 50214388 50215250 -71042280 + Lx5 LINE L1 5656 6789 -671 2 968 423 241 94 8 chr12 50215291 50215408 -71042122 - RLTR19 LTR ERVK -50 449 323 2 968 1513 324 23 6 chr12 50215423 50215904 -71041626 + Lx5 LINE L1 6492 6980 -70 2 968 966 214 16 39 chr12 50215898 50216155 -71041375 + Lx7 LINE L1 2507 2757 -3123 2 968 1943 189 86 27 chr12 50216164 50216642 -71040888 + Lx7 LINE L1 3324 3829 -2051 2 968 747 229 41 29 chr12 50216648 50216891 -71040639 + Lx7 LINE L1 4070 4315 -1565 2 968 6745 82 52 9 chr12 50216895 50217887 -71039643 + Lx3_Mus LINE L1 5954 6988 -21 2 968 233 29 0 29 chr12 50217887 50217922 -71039608 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2 968 3658 207 36 28 chr12 50217929 50218835 -71038695 + Lx7 LINE L1 4310 5223 -657 2 968 2534 64 3 0 chr12 50218834 50219162 -71038368 + L1Md_F LINE L1 597 925 -5594 2 968 2704 194 32 7 chr12 50219143 50219703 -71037827 + Lx7 LINE L1 5209 5782 -98 2 968 252 247 13 25 chr12 50219698 50219777 -71037753 + Lx7 LINE L1 6160 6237 -1459 2 968 4168 225 61 46 chr12 50219806 50220263 -71037267 + Lx7 LINE L1 6487 6953 -743 2 968 432 0 0 0 chr12 50220263 50220311 -71037219 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 968 4168 225 61 46 chr12 50220311 50221045 -71036485 + Lx7 LINE L1 6954 7696 0 2 968 333 0 0 0 chr12 50221070 50221107 -71036423 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 968 378 371 17 17 chr12 50222636 50222814 -71034716 - MamGypLTR1a LTR Gypsy -513 271 94 2 968 399 68 0 0 chr12 50223039 50223098 -71034432 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 968 271 222 46 17 chr12 50224021 50224066 -71033464 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 968 3064 30 73 0 chr12 50224066 50224435 -71033095 + MTA_Mm LTR MaLR 1 396 0 2 968 271 222 46 17 chr12 50224435 50224563 -71032967 + (TA)n Simple_repeat Simple_repeat 1 134 0 2 968 1273 108 73 9 chr12 50225456 50225747 -71031783 - RLTR44A LTR ERVK 0 449 1 2 968 5974 80 80 96 chr12 50225856 50226332 -71031198 + L1Md_Gf LINE L1 97 612 -5910 2 968 242 316 60 50 chr12 50226332 50226432 -71031098 + RLTR45 LTR ERVK 4 104 -378 2 968 5974 80 80 96 chr12 50226432 50226919 -71030611 + L1Md_Gf LINE L1 613 1142 -5380 2 968 34991 45 1 0 chr12 50226885 50231263 -71026267 + L1Md_T LINE L1 1203 5586 -297 2 968 7978 54 0 0 chr12 50231263 50232277 -71025253 + L1Md_T LINE L1 5587 6582 0 2 968 1512 44 0 0 chr12 50232277 50232458 -71025072 + L1Md_T LINE L1 5406 5586 -297 2 968 8317 37 0 0 chr12 50232458 50233454 -71024076 + L1Md_T LINE L1 5587 6582 0 2 968 937 206 44 10 chr12 50233786 50233992 -71023538 - URR1B DNA MER1_type 0 225 13 2 968 39 80 0 0 chr12 50234210 50234298 -71023232 + AT_rich Low_complexity Low_complexity 1 88 0 2 968 242 56 28 0 chr12 50234402 50234438 -71023092 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2 968 8139 108 27 18 chr12 50234488 50236692 -71020838 - Lx3A LINE L1 -3 6978 4744 2 968 1101 177 81 84 chr12 50236678 50236962 -71020568 - L1_Mur3 LINE L1 -209 5671 5389 2 968 2405 283 156 11 chr12 50236968 50237699 -71019831 - Lx6 LINE L1 -11 7449 6613 2 968 805 161 12 0 chr12 50237696 50237838 -71019692 - Lx3C LINE L1 -1344 5632 5484 2 968 944 137 23 6 chr12 50238073 50238249 -71019281 - L1_Mur3 LINE L1 -3109 2771 2593 2 968 970 212 8 28 chr12 50238244 50238492 -71019038 - Lx3C LINE L1 -519 5361 5119 2 968 782 297 78 53 chr12 50240023 50240760 -71016770 + Lx7 LINE L1 5095 5906 -1790 2 968 909 258 98 4 chr12 50240855 50241089 -71016441 - MTD LTR MaLR 0 419 164 2 968 252 292 14 0 chr12 50241090 50241162 -71016368 + Lx5 LINE L1 6568 6640 -410 2 968 198 0 0 0 chr12 50242443 50242465 -71015065 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2 968 276 296 120 70 chr12 50242474 50242653 -71014877 + Lx5 LINE L1 6880 7047 -3 2 968 299 247 52 0 chr12 50242682 50242759 -71014771 - MTD LTR MaLR -329 90 10 2 968 325 154 0 0 chr12 50242779 50242831 -71014699 - ORR1C2 LTR MaLR 0 384 333 2 968 4671 151 19 7 chr12 50242831 50243693 -71013837 + Lx2B LINE L1 5502 6384 -616 3 968 2028 105 7 0 chr12 50243705 50243999 -71013531 - L1_Mur1 LINE L1 -349 5537 5242 3 968 682 235 122 11 chr12 50244011 50244200 -71013330 + Lx6 LINE L1 7132 7341 -119 3 968 844 295 75 11 chr12 50244302 50244390 -71013140 + Lx7 LINE L1 5353 5451 -429 3 968 423 0 0 0 chr12 50244390 50244437 -71013093 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 3 968 844 295 75 11 chr12 50244437 50244708 -71012822 + Lx7 LINE L1 5452 5735 -145 3 968 615 280 129 23 chr12 50244852 50245008 -71012522 + RMER15 LTR ERVL 276 440 -135 3 968 784 279 78 88 chr12 50245008 50245382 -71012148 + ORR1D2 LTR MaLR 1 370 0 3 968 615 280 129 23 chr12 50245382 50245463 -71012067 + RMER15 LTR ERVL 441 540 -35 3 968 342 0 0 0 chr12 50245463 50245501 -71012029 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 968 615 280 129 23 chr12 50245501 50245518 -71012012 + RMER15 LTR ERVL 541 557 -18 3 968 671 372 14 14 chr12 50245576 50245857 -71011673 + B4 SINE B4 6 286 -6 3 968 300 316 39 22 chr12 50246160 50246341 -71011189 + Lx7 LINE L1 6004 6187 -1509 3 968 2584 314 83 26 chr12 50246349 50247594 -71009936 + Lx8 LINE L1 6129 7444 -29 3 968 758 102 8 0 chr12 50248001 50248119 -71009411 + (TCTCCC)n Simple_repeat Simple_repeat 3 121 0 3 968 180 0 0 0 chr12 50248129 50248149 -71009381 + (CAT)n Simple_repeat Simple_repeat 2 21 0 3 968 243 375 37 28 chr12 50248260 50248367 -71009163 + PB1 SINE Alu 18 125 -2 3 968 24 67 0 0 chr12 50248653 50248698 -71008832 + AT_rich Low_complexity Low_complexity 1 45 0 3 968 1937 241 10 8 chr12 50248698 50249099 -71008431 + Lx6 LINE L1 7059 7460 0 3 968 758 324 0 9 chr12 50249232 50249447 -71008083 + MTD LTR MaLR 1 213 -206 3 968 3549 46 9 0 chr12 50249469 50249901 -71007629 - RLTR10C LTR ERVK 0 436 1 3 968 45380 9 0 0 chr12 50249901 50254929 -71002601 - MMERVK10C-int LTR ERVK 0 7581 2552 3 968 361 111 0 0 chr12 50254935 50254998 -71002532 - MMERVK10C-int LTR ERVK -5634 1947 1885 3 968 326 155 17 0 chr12 50255005 50255063 -71002467 - MMERVK10C-int LTR ERVK -5627 1779 1721 3 968 669 246 144 67 chr12 50255063 50255435 -71002095 - MMERVK10C-int LTR ERVK -4819 2425 2075 3 968 898 148 4 177 chr12 50255523 50255794 -71001736 - MMERVK10C-int LTR ERVK -6629 952 729 3 968 2809 50 0 0 chr12 50255792 50256135 -71001395 - MMERVK10C-int LTR ERVK -7238 343 1 3 968 3549 46 9 0 chr12 50256135 50256567 -71000963 - RLTR10C LTR ERVK 0 436 1 3 968 237 203 46 15 chr12 50256702 50256767 -71000763 - L1M5 LINE L1 -539 5701 5635 3 968 29337 81 48 21 chr12 50257029 50263298 -70994232 - L1Md_F2 LINE L1 0 6582 128 3 968 461 239 92 21 chr12 50263319 50263460 -70994070 - Lx3C LINE L1 -3 6973 6823 3 968 209 238 0 0 chr12 50263949 50263991 -70993539 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 968 391 285 117 9 chr12 50264089 50264319 -70993211 - L1M5 LINE L1 -1475 4671 4417 3 968 1104 307 34 39 chr12 50264637 50264993 -70992537 - ORR1E LTR MaLR 0 359 6 3 968 23 54 0 0 chr12 50265022 50265059 -70992471 + AT_rich Low_complexity Low_complexity 1 37 0 3 968 3036 211 18 58 chr12 50266655 50267027 -70990503 - L1_Mur3 LINE L1 -3829 2051 1675 3 968 294 106 0 0 chr12 50267027 50267074 -70990456 + (TAG)n Simple_repeat Simple_repeat 1 47 0 3 968 3036 211 18 58 chr12 50267074 50267292 -70990238 - L1_Mur3 LINE L1 -4206 1674 1495 3 968 7012 117 27 34 chr12 50267292 50267395 -70990135 - Lx3A LINE L1 0 6981 6874 3 968 297 0 123 0 chr12 50267395 50267468 -70990062 + (CCCA)n Simple_repeat Simple_repeat 2 83 0 3 968 7012 117 27 34 chr12 50267468 50268541 -70988989 - Lx3A LINE L1 -108 6873 5815 3 968 3036 218 29 52 chr12 50268541 50268928 -70988602 - L1_Mur3 LINE L1 -4386 1494 1096 3 968 1096 247 15 92 chr12 50268931 50269256 -70988274 + Lx6 LINE L1 7148 7447 -13 3 968 590 304 59 15 chr12 50269891 50270215 -70987315 + L1MA6 LINE L1 5944 6281 -19 3 968 355 247 13 0 chr12 50270316 50270393 -70987137 + MTEa LTR MaLR 9 86 -293 3 968 1026 246 43 8 chr12 50270399 50270653 -70986877 - Lx6 LINE L1 0 7460 7198 3 968 989 218 64 8 chr12 50270641 50270877 -70986653 - Lx6 LINE L1 -564 6896 6648 3 968 1041 295 39 0 chr12 50270878 50271163 -70986367 + MTEa LTR MaLR 82 377 -2 3 968 270 348 99 7 chr12 50271223 50271365 -70986165 + RSINE1 SINE B4 7 161 -4 3 968 244 70 23 23 chr12 50271377 50271421 -70986109 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 3 968 315 0 0 0 chr12 50271452 50271487 -70986043 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 968 1732 294 75 41 chr12 50272358 50273073 -70984457 - Lx8 LINE L1 -92 7381 6642 3 968 429 215 28 18 chr12 50273741 50273850 -70983680 - RLTR11A2 LTR ERVK -14 513 404 3 968 588 183 27 40 chr12 50273860 50274008 -70983522 + MYSERV6-int LTR ERVK 8767 8912 -47 3 968 1800 207 66 15 chr12 50274004 50274509 -70983021 + MYSERV-int LTR ERVK 6036 6489 -61 3 968 727 290 8 72 chr12 50274510 50274805 -70982725 + RLTR11B LTR ERVK 1 273 -168 3 968 597 187 24 96 chr12 50274902 50275068 -70982462 + RLTR11B LTR ERVK 285 438 -15 3 968 1677 167 10 3 chr12 50276843 50277137 -70980393 - MurERV4-int LTR ERVK -2073 3187 2892 3 968 189 0 0 0 chr12 50277137 50277158 -70980372 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 968 31 26 0 0 chr12 50277514 50277552 -70979978 + AT_rich Low_complexity Low_complexity 1 38 0 3 968 348 355 78 62 chr12 50278126 50278369 -70979161 + B4A SINE B4 42 288 -4 3 968 1786 166 67 36 chr12 50278406 50278762 -70978768 - ORR1B2 LTR MaLR 0 367 1 3 968 576 84 0 0 chr12 50279122 50279205 -70978325 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 968 850 167 0 11 chr12 50279207 50279389 -70978141 + GA-rich Low_complexity Low_complexity 1 180 0 3 968 6554 94 54 10 chr12 50279500 50279612 -70977918 - Lx LINE L1 -6 6648 6523 3 968 270 0 0 0 chr12 50279612 50279642 -70977888 + (CCCA)n Simple_repeat Simple_repeat 1 30 0 3 968 6554 98 50 9 chr12 50279642 50280627 -70976903 - Lx LINE L1 -132 6522 5506 3 968 1190 236 31 35 chr12 50280627 50280913 -70976617 - ORR1D1 LTR MaLR -89 285 1 3 968 710 322 101 57 chr12 50282604 50283150 -70974380 - Charlie7 DNA MER1_type -1981 631 62 3 968 21 0 0 0 chr12 50283686 50283707 -70973823 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 264 130 0 0 chr12 50284198 50284244 -70973286 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 968 391 346 44 0 chr12 50284245 50284381 -70973149 - B1F1 SINE Alu -7 142 1 3 968 6524 76 10 3 chr12 50284448 50285325 -70972205 + L1_Mus3 LINE L1 5750 6632 -6 3 968 5114 66 0 5 chr12 50285887 50286546 -70970984 + L1_Mus1 LINE L1 5912 6567 0 3 968 441 298 8 0 chr12 50286590 50286721 -70970809 + Lx8 LINE L1 7040 7171 -302 3 968 982 221 89 49 chr12 50287059 50287363 -70970167 - Lx6 LINE L1 -4 7456 7141 3 968 5044 197 95 12 chr12 50287387 50288241 -70969289 + L1_Mur3 LINE L1 2223 3116 -2764 3 968 666 78 0 0 chr12 50288241 50288343 -70969187 + (GA)n Simple_repeat Simple_repeat 1 102 0 3 968 5044 197 95 12 chr12 50288343 50288898 -70968632 + L1_Mur3 LINE L1 3117 3748 -2132 3 968 482 304 101 28 chr12 50288889 50289136 -70968394 + Lx6 LINE L1 5960 6224 -1236 3 968 1094 102 13 0 chr12 50289195 50289352 -70968178 - B2_Mm2 SINE B2 -32 163 5 3 968 4699 249 33 19 chr12 50289354 50290583 -70966947 + Lx6 LINE L1 6214 7459 -1 3 968 25 0 0 0 chr12 50291047 50291072 -70966458 + AT_rich Low_complexity Low_complexity 1 25 0 3 968 201 74 0 0 chr12 50291991 50292018 -70965512 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 968 5232 174 18 24 chr12 50293712 50295038 -70962492 + L1Md_F LINE L1 99 1205 -5411 3 968 34732 32 1 0 chr12 50295044 50299457 -70958073 + L1Md_F LINE L1 1170 5586 -297 3 968 7977 57 0 0 chr12 50299457 50300453 -70957077 + L1Md_T LINE L1 5587 6582 0 3 968 34732 31 1 0 chr12 50300453 50300467 -70957063 + L1Md_F LINE L1 5587 5600 -283 3 968 458 312 18 22 chr12 50300557 50300780 -70956750 + L1M2 LINE L1 5279 5500 -797 3 968 591 254 107 53 chr12 50301112 50301299 -70956231 - MTE2a LTR MaLR -9 370 174 3 968 2899 57 0 14 chr12 50301328 50301699 -70955831 + L1Md_F2 LINE L1 6206 6571 -11 3 968 390 281 73 73 chr12 50302081 50302231 -70955299 - MTE2a LTR MaLR -229 150 1 3 968 3622 240 33 10 chr12 50302478 50303376 -70954154 + Lx5 LINE L1 6123 7041 -9 3 968 232 263 0 0 chr12 50303708 50303765 -70953765 - Lx8 LINE L1 -398 7075 7019 3 968 6275 88 28 7 chr12 50303770 50304653 -70952877 - RLTR13D6 LTR ERVK 0 902 1 3 968 1556 130 12 0 chr12 50304671 50304918 -70952612 - ETnERV3-int LTR ERVK -31 5777 5528 3 968 2438 167 46 12 chr12 50304918 50305422 -70952108 - ETnERV3-int LTR ERVK -420 5388 4868 3 968 28 0 0 0 chr12 50305881 50305909 -70951621 + AT_rich Low_complexity Low_complexity 1 28 0 3 968 1476 240 49 16 chr12 50306185 50306633 -70950897 - Lx7 LINE L1 -1567 6129 5667 3 968 1995 166 22 17 chr12 50306633 50307103 -70950427 + ORR1A2 LTR MaLR 1 386 -8 3 968 6434 165 19 10 chr12 50307137 50308369 -70949161 + Lx3C LINE L1 5555 6795 -181 3 968 1079 208 22 0 chr12 50308361 50308592 -70948938 - Lx7 LINE L1 -6736 992 757 3 968 466 194 43 45 chr12 50308593 50308783 -70948747 + B2_Mm2 SINE B2 3 198 0 3 968 1311 255 65 27 chr12 50308881 50309328 -70948202 - Lx7 LINE L1 -6956 772 309 3 968 1647 175 78 6 chr12 50309383 50309705 -70947825 - ORR1A1 LTR MaLR -1 345 1 3 968 1433 245 60 70 chr12 50310057 50310689 -70946841 + L1_Rod LINE L1 719 1344 -6264 3 968 2645 99 5 20 chr12 50310726 50311118 -70946412 - L1_Mus3 LINE L1 0 6638 6253 3 968 3161 91 29 6 chr12 50311119 50311596 -70945934 + L1_Mus3 LINE L1 5753 6240 -398 3 968 7086 82 2 1 chr12 50311659 50313056 -70944474 - L1_Mus2 LINE L1 -1 6565 5169 3 968 2008 253 60 54 chr12 50313061 50314120 -70943410 + L1_Rod LINE L1 1335 2400 -3447 3 968 1038 309 60 8 chr12 50314138 50314507 -70943023 - Lx6 LINE L1 -27 7433 7046 3 968 779 306 91 9 chr12 50314528 50314879 -70942651 - Lx6 LINE L1 -575 6885 6455 3 968 598 231 110 13 chr12 50314880 50315117 -70942413 + L1_Rod LINE L1 2387 2646 -3201 3 968 36605 38 1 5 chr12 50315116 50320746 -70936784 - L1Md_A LINE L1 -2 6580 988 3 968 2029 35 4 0 chr12 50320746 50321002 -70936528 - IAPEz-int LTR ERVK -1690 297 41 3 968 2645 42 13 184 chr12 50321014 50321482 -70936048 - RLTR10 LTR ERVK -2 388 1 3 968 14863 33 9 2 chr12 50321484 50323613 -70933917 - IAPEz-int LTR ERVK -49 6432 4552 3 968 1423 25 13 3 chr12 50323613 50323800 -70933730 - RLTR10 LTR ERVK -207 204 1 3 968 2196 69 3 0 chr12 50323800 50324103 -70933427 - L1Md_A LINE L1 -5643 973 670 3 968 1060 196 4 4 chr12 50324095 50324326 -70933204 - L1Md_A LINE L1 -6282 334 104 3 968 578 258 46 32 chr12 50324327 50324543 -70932987 + L1_Rod LINE L1 2633 2851 -2996 3 968 611 230 192 28 chr12 50324554 50324809 -70932721 + Lx9 LINE L1 7340 7636 -8 3 968 305 122 0 0 chr12 50324901 50324950 -70932580 + RLTR17 LTR ERVK 1 49 -643 3 968 397 250 125 3 chr12 50325193 50325335 -70932195 + LTR80A LTR ERVL 163 322 -262 3 968 229 231 15 30 chr12 50325503 50325570 -70931960 + CT-rich Low_complexity Low_complexity 2 67 0 3 968 1073 70 7 34 chr12 50325605 50325736 -70931794 + B1_Mm SINE Alu 5 136 -11 3 968 230 0 33 0 chr12 50325736 50325766 -70931764 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 968 1073 70 7 34 chr12 50325766 50325781 -70931749 + B1_Mm SINE Alu 137 147 0 3 968 185 65 0 31 chr12 50325923 50325955 -70931575 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 968 1945 188 8 8 chr12 50325964 50326334 -70931196 - Lx2A1 LINE L1 -3 7005 6636 3 968 1176 168 5 5 chr12 50326338 50326548 -70930982 - Lx2A1 LINE L1 -657 6343 6134 3 968 4664 67 5 10 chr12 50326948 50327565 -70929965 + L1_Mus1 LINE L1 5954 6567 0 3 968 1122 193 24 0 chr12 50327863 50328075 -70929455 - BGLII_B LTR ERVK -224 217 1 3 968 8405 179 35 62 chr12 50328075 50328483 -70929047 + L1_Mur2 LINE L1 3023 3395 -2485 3 968 2217 205 72 94 chr12 50328483 50329108 -70928422 + RMER19C LTR ERVK 1 611 0 3 968 8405 186 32 77 chr12 50329108 50331427 -70926103 + L1_Mur2 LINE L1 3395 5485 -395 3 969 258 383 104 0 chr12 50331830 50331945 -70925585 + PB1 SINE Alu 1 127 0 3 969 22 0 0 0 chr12 50331947 50331969 -70925561 + AT_rich Low_complexity Low_complexity 1 22 0 3 969 1183 164 182 8 chr12 50332368 50332620 -70924910 + ORR1B1 LTR MaLR 1 296 -98 3 969 976 218 13 22 chr12 50333421 50333646 -70923884 - URR1A DNA MER1_type -3 223 1 4 969 2046 237 51 4 chr12 50333683 50334153 -70923377 - Lx6 LINE L1 -169 7291 6800 4 969 1573 218 32 3 chr12 50334591 50334969 -70922561 - L1_Mur3 LINE L1 -3299 2581 2193 4 969 1905 74 4 8 chr12 50334973 50335232 -70922298 + RLTR9D LTR ERVK 1 258 -145 4 969 214 200 22 22 chr12 50335256 50335302 -70922228 - L2a LINE L2 -8 3418 3373 4 969 238 276 17 0 chr12 50335321 50335379 -70922151 - MIRc SINE MIR -115 153 95 4 969 991 120 13 0 chr12 50335381 50335539 -70921991 + RLTR9D LTR ERVK 244 403 0 4 969 702 193 150 103 chr12 50335539 50335898 -70921632 - L1_Mur3 LINE L1 -3686 2194 1819 4 969 3709 249 89 21 chr12 50335903 50337214 -70920316 - L1_Mur3 LINE L1 -6388 1340 17 4 969 264 269 57 62 chr12 50337272 50337466 -70920064 - L1_Mur3 LINE L1 -6692 1020 828 4 969 356 328 24 57 chr12 50337814 50338060 -70919470 - L1_Mur3 LINE L1 -6883 829 592 4 969 3476 38 28 12 chr12 50338173 50338602 -70918928 - RLTR10C LTR ERVK 0 436 1 4 969 250 329 31 25 chr12 50338732 50338891 -70918639 - L1M4c LINE L1 -4558 1826 1667 4 969 30121 76 10 3 chr12 50339885 50344363 -70913167 + L1Md_F2 LINE L1 733 5232 -651 4 969 649 0 0 24 chr12 50344363 50344446 -70913084 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 969 30121 76 5 3 chr12 50344446 50344787 -70912743 + L1Md_F2 LINE L1 5233 5585 -298 4 969 7757 67 1 0 chr12 50344788 50345782 -70911748 + L1Md_F2 LINE L1 5588 6582 0 4 969 711 303 70 47 chr12 50345786 50346084 -70911446 - RMER15 LTR ERVL -181 394 90 4 969 324 0 0 0 chr12 50346084 50346120 -70911410 + (T)n Simple_repeat Simple_repeat 1 36 0 4 969 36246 49 4 12 chr12 50346153 50352837 -70904693 - L1Md_T LINE L1 0 6585 66 4 969 272 272 22 7 chr12 50352958 50353095 -70904435 - Lx9 LINE L1 -4 7640 7502 4 969 1750 183 24 100 chr12 50353255 50353675 -70903855 + ORR1B1 LTR MaLR 5 392 -2 4 969 342 0 0 0 chr12 50353896 50353934 -70903596 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 969 365 200 45 9 chr12 50355620 50355731 -70901799 + L1_Mur3 LINE L1 114 228 -7484 4 969 593 265 28 0 chr12 50355861 50356076 -70901454 + L1_Mur3 LINE L1 876 1096 -6616 4 969 234 0 0 0 chr12 50356076 50356102 -70901428 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 4 969 545 0 15 0 chr12 50356200 50356265 -70901265 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 969 693 274 13 13 chr12 50356290 50356516 -70901014 + L1VL4 LINE L1 238 463 -5839 4 969 980 95 69 6 chr12 50356514 50356673 -70900857 - L1_Mus3 LINE L1 -658 5980 5812 4 969 5149 163 34 4 chr12 50356662 50357027 -70900503 + L1_Mus2 LINE L1 4848 5242 -641 4 969 234 0 0 0 chr12 50357027 50357053 -70900477 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 969 5149 170 71 15 chr12 50357053 50358753 -70898777 + L1_Mus2 LINE L1 5243 6997 0 4 969 252 192 89 13 chr12 50358774 50358805 -70898725 + L1_Mur3 LINE L1 1157 1194 -6534 4 969 216 0 0 0 chr12 50358805 50358829 -70898701 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 969 252 192 89 13 chr12 50358829 50358876 -70898654 + L1_Mur3 LINE L1 1195 1241 -6487 4 969 1088 198 153 107 chr12 50358876 50359300 -70898230 + RMER16 LTR ERVK 1 533 0 4 969 1442 160 98 3 chr12 50359300 50359626 -70897904 + L1_Mur3 LINE L1 1237 1593 -4284 4 969 950 325 24 31 chr12 50359635 50359814 -70897716 - RMER1C Other Other -463 879 792 4 969 2117 162 81 136 chr12 50359814 50360286 -70897244 - RLTR41 LTR ERV1 0 446 1 4 969 950 315 45 39 chr12 50360286 50360661 -70896869 - RMER1C Other Other -551 791 412 4 969 3980 178 29 69 chr12 50360662 50361740 -70895790 + L1_Mur3 LINE L1 2978 4012 -1868 4 969 36816 6 0 0 chr12 50361730 50366938 -70890592 + L1Md_A LINE L1 378 5586 -297 4 969 8737 18 0 0 chr12 50366938 50367934 -70889596 + L1Md_A LINE L1 5587 6582 0 4 969 582 148 58 146 chr12 50367937 50368142 -70889388 + L1_Mur3 LINE L1 4002 4188 -1692 4 969 256 157 20 0 chr12 50368179 50368230 -70889300 + L1_Mur3 LINE L1 5176 5227 -653 4 969 414 0 0 0 chr12 50368234 50368280 -70889250 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 969 450 0 0 0 chr12 50368364 50368414 -70889116 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 969 333 0 0 0 chr12 50368413 50368450 -70889080 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 969 1917 178 10 3 chr12 50368450 50368834 -70888696 + L1_Mur3 LINE L1 5232 5618 -262 4 969 241 320 10 0 chr12 50368860 50368960 -70888570 - L1_Rod LINE L1 -1493 4354 4254 4 969 8691 116 17 11 chr12 50368952 50370409 -70887121 + Lx2 LINE L1 5518 6983 -14 4 969 180 0 0 0 chr12 50370412 50370432 -70887098 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 969 733 274 105 12 chr12 50370465 50370790 -70886740 - L1_Mur3 LINE L1 -1622 4258 3904 4 969 270 353 10 0 chr12 50370894 50370996 -70886534 + Lx8 LINE L1 6622 6724 -749 4 969 683 254 139 19 chr12 50371002 50371316 -70886214 + ORR1D1 LTR MaLR 23 374 0 4 969 5885 97 11 12 chr12 50371325 50372744 -70884786 + L1Md_F2 LINE L1 290 1706 -4177 4 969 6548 59 0 0 chr12 50372741 50373594 -70883936 + L1_Mm LINE L1 4734 5586 -297 4 969 7824 60 3 0 chr12 50373594 50374584 -70882946 + L1Md_F2 LINE L1 5587 6579 -3 4 969 27372 77 1 6 chr12 50374599 50378517 -70879013 + L1Md_F2 LINE L1 1686 5586 -297 4 969 7696 53 11 0 chr12 50378517 50379490 -70878040 + L1Md_F2 LINE L1 5587 6570 -12 4 969 997 259 8 4 chr12 50379504 50379744 -70877786 + ORR1D1-int LTR MaLR 6 246 -1124 4 969 370 143 0 48 chr12 50379788 50379913 -70877617 + T-rich Low_complexity Low_complexity 1 119 0 4 969 1169 68 0 13 chr12 50379916 50380065 -70877465 - B1_Mus2 SINE Alu 0 147 1 4 969 3925 251 45 15 chr12 50380065 50381037 -70876493 + ORR1D1-int LTR MaLR 232 1232 -138 4 969 560 230 30 0 chr12 50381039 50381174 -70876356 + Lx4A LINE L1 6917 7055 -3 4 969 839 149 20 13 chr12 50381191 50381341 -70876189 + ORR1D1-int LTR MaLR 1220 1370 0 4 969 761 284 48 16 chr12 50381341 50381660 -70875870 + ORR1D1 LTR MaLR 1 365 -5 4 969 1107 65 0 0 chr12 50381660 50381798 -70875732 + B1_Mus1 SINE Alu 1 138 -10 4 969 216 135 0 0 chr12 50381812 50381849 -70875681 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 4 969 786 39 0 0 chr12 50381849 50381951 -70875579 + (GAGAA)n Simple_repeat Simple_repeat 2 103 0 4 969 1970 227 112 34 chr12 50382005 50382730 -70874800 - RMER1B Other Other -3 1063 100 4 969 239 333 48 29 chr12 50382731 50382836 -70874694 - RMER20B LTR ERVK -12 615 509 4 969 345 382 35 7 chr12 50382825 50382970 -70874560 - RMER20B LTR ERVK -21 606 458 4 969 1616 47 0 0 chr12 50382984 50383177 -70874353 + B2_Mm1a SINE B2 1 193 0 4 969 458 262 69 80 chr12 50383341 50383581 -70873949 - RMER20B LTR ERVK -208 419 189 4 969 1159 292 79 23 chr12 50383754 50384313 -70873217 - RMER1C Other Other -463 879 154 4 969 233 306 36 108 chr12 50384282 50384505 -70873025 - RMER1B Other Other -833 233 27 4 969 778 273 15 59 chr12 50384558 50384910 -70872620 + L1_Rod LINE L1 1768 2100 -3747 4 969 213 94 0 0 chr12 50384910 50384942 -70872588 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 969 778 273 15 59 chr12 50384942 50384998 -70872532 + L1_Rod LINE L1 2101 2158 -3689 4 969 414 256 69 46 chr12 50385035 50385166 -70872364 + MT2A LTR ERVL 13 146 -387 4 969 477 0 0 0 chr12 50385223 50385276 -70872254 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 969 950 257 54 4 chr12 50385281 50385558 -70871972 - Lx8 LINE L1 -362 7111 6821 4 969 2234 174 21 0 chr12 50385567 50385953 -70871577 - ORR1B1 LTR MaLR 0 394 1 4 969 2452 63 13 0 chr12 50385984 50386299 -70871231 - Lx3_Mus LINE L1 0 7009 6691 4 969 547 278 89 9 chr12 50386299 50386524 -70871006 - Lx8 LINE L1 -665 6808 6566 4 969 302 242 61 71 chr12 50386524 50386622 -70870908 + ORR1D1 LTR MaLR 1 97 -277 4 969 353 295 0 43 chr12 50387103 50387220 -70870310 - Lx8 LINE L1 -1164 6309 6198 4 969 551 51 13 0 chr12 50387267 50387346 -70870184 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 4 969 210 217 0 21 chr12 50387361 50387408 -70870122 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 969 22 0 0 0 chr12 50387456 50387478 -70870052 + AT_rich Low_complexity Low_complexity 1 22 0 4 969 3185 235 142 6 chr12 50387491 50388554 -70868976 - RMER1B Other Other -1 1065 67 4 969 666 45 17 26 chr12 50389046 50389161 -70868369 - L1_Mus3 LINE L1 0 6638 6525 4 969 210 71 0 0 chr12 50389996 50390024 -70867506 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 969 806 263 14 18 chr12 50390376 50390593 -70866937 - B3 SINE B2 0 216 1 4 969 4120 166 42 2 chr12 50390682 50391643 -70865887 + Lx4B LINE L1 5144 6152 -906 4 969 581 134 9 0 chr12 50392101 50392213 -70865317 + (CA)n Simple_repeat Simple_repeat 2 114 0 4 969 2045 241 107 19 chr12 50392239 50392497 -70865033 + RMER1C Other Other 722 1000 -342 4 969 917 111 0 13 chr12 50392497 50392652 -70864878 + (GAAA)n Simple_repeat Simple_repeat 2 154 0 4 969 2045 241 107 19 chr12 50392652 50392964 -70864566 + RMER1C Other Other 1001 1341 -1 4 969 838 301 35 14 chr12 50392970 50393256 -70864274 + B4A SINE B4 1 292 0 4 969 252 257 40 0 chr12 50393263 50393337 -70864193 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 4 969 346 305 58 17 chr12 50394614 50394734 -70862796 + MIR SINE MIR 37 161 -101 4 969 25 65 0 0 chr12 50394888 50394934 -70862596 + AT_rich Low_complexity Low_complexity 1 46 0 4 969 196 284 60 0 chr12 50395428 50395495 -70862035 - MIR3 SINE MIR -23 185 115 4 969 279 0 0 0 chr12 50396334 50396365 -70861165 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 969 305 372 0 0 chr12 50396386 50396472 -70861058 - B1F SINE Alu -55 94 9 4 969 842 135 63 68 chr12 50396595 50396786 -70860744 + B2_Mm2 SINE B2 3 192 -3 4 969 2789 249 142 40 chr12 50396889 50397819 -70859711 + Lx9 LINE L1 6370 7394 -250 4 969 447 19 0 0 chr12 50397838 50397890 -70859640 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 969 216 111 0 0 chr12 50398273 50398309 -70859221 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 4 969 1705 271 38 115 chr12 50398325 50398909 -70858621 - Lx6 LINE L1 -175 7285 6747 4 969 478 46 0 0 chr12 50398903 50398968 -70858562 - L1_Mus2 LINE L1 0 6566 6502 4 969 1583 249 44 42 chr12 50398975 50399457 -70858073 - Lx6 LINE L1 -689 6771 6289 4 969 1703 176 11 132 chr12 50399461 50399641 -70857889 - L1_Mur3 LINE L1 -2409 3471 3326 4 969 3385 41 0 2 chr12 50399641 50400053 -70857477 - L1Md_F2 LINE L1 -2 6580 6170 4 969 1703 176 11 132 chr12 50400053 50400416 -70857114 - L1_Mur3 LINE L1 -2555 3325 2994 4 969 402 202 12 0 chr12 50400417 50400501 -70857029 - RMER1C Other Other -11 1331 1247 4 969 324 0 0 0 chr12 50400506 50400542 -70856988 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 969 512 103 12 25 chr12 50400558 50400638 -70856892 - RMER1C Other Other -150 1192 1114 4 969 2668 180 31 0 chr12 50400624 50401075 -70856455 + RMER1A Other Other 431 895 -135 4 969 1166 223 38 62 chr12 50401606 50402208 -70855322 + L1Md_A LINE L1 887 1451 -4426 4 969 1314 185 54 4 chr12 50402228 50402488 -70855042 + Lx LINE L1 6364 6636 -18 4 969 216 0 0 0 chr12 50402509 50402533 -70854997 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 969 245 313 0 0 chr12 50402629 50402696 -70854834 + GA-rich Low_complexity Low_complexity 2 68 0 4 969 15778 165 118 65 chr12 50402839 50403365 -70854165 + L1Md_A LINE L1 1485 2051 -3826 4 969 603 27 0 0 chr12 50403365 50403438 -70854092 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 969 300 27 0 0 chr12 50403448 50403485 -70854045 + (CCA)n Simple_repeat Simple_repeat 1 37 0 4 969 15778 165 118 65 chr12 50403485 50403829 -70853701 + L1Md_A LINE L1 2057 2174 -3703 4 969 8381 36 0 0 chr12 50403829 50404822 -70852708 + L1Md_T LINE L1 5588 6580 -2 4 969 21796 35 21 11 chr12 50404822 50407829 -70849701 + L1Md_A LINE L1 2175 5586 -297 4 969 8866 10 0 0 chr12 50407829 50408905 -70848625 + L1Md_A LINE L1 5587 6582 0 4 969 272 284 125 19 chr12 50408968 50408984 -70848546 - B1_Mur1 SINE Alu -7 142 28 5 969 285 296 57 0 chr12 50408984 50409072 -70848458 - ID_B1 SINE B4 -23 201 109 5 969 530 385 46 68 chr12 50409111 50409613 -70847917 - MLT1H1 LTR MaLR -7 548 58 5 969 185 376 34 39 chr12 50409618 50409823 -70847707 - MIR SINE MIR -58 204 1 5 969 26 30 0 0 chr12 50409888 50409921 -70847609 + AT_rich Low_complexity Low_complexity 1 33 0 5 969 241 338 55 21 chr12 50409999 50410144 -70847386 + L1MA5 LINE L1 5973 6122 -178 5 969 303 241 24 0 chr12 50410183 50410266 -70847264 + L1MA5 LINE L1 6199 6283 -17 5 969 26 50 0 0 chr12 50410378 50410418 -70847112 + AT_rich Low_complexity Low_complexity 1 40 0 5 969 181 353 45 34 chr12 50410920 50411008 -70846522 - L2c LINE L2 -3 3384 3296 5 969 336 389 7 37 chr12 50411091 50411227 -70846303 - RSINE1 SINE B4 -32 133 2 5 969 34655 71 1 8 chr12 50411406 50417649 -70839881 - L1Md_F3 LINE L1 -12 6572 353 5 969 747 166 13 70 chr12 50417761 50417831 -70839699 + B1_Mur4 SINE Alu 4 72 -78 5 969 5025 125 16 25 chr12 50417831 50418634 -70838896 + Lx3A LINE L1 6186 6981 0 5 969 474 33 0 0 chr12 50418642 50418702 -70838828 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 5 969 747 166 13 70 chr12 50418702 50418778 -70838752 + B1_Mur4 SINE Alu 77 150 0 5 969 268 255 0 0 chr12 50419465 50419516 -70838014 + PB1D10 SINE Alu 35 85 -32 5 969 533 15 0 15 chr12 50419525 50419592 -70837938 + (TAAA)n Simple_repeat Simple_repeat 4 69 0 5 969 326 323 75 30 chr12 50419759 50419960 -70837570 - Lx8 LINE L1 -120 7353 7144 5 969 994 332 80 2 chr12 50419962 50420207 -70837323 + Lx8 LINE L1 6388 6647 -826 5 969 4488 79 5 2 chr12 50420207 50420803 -70836727 + L1_Mus2 LINE L1 5969 6566 0 5 969 994 332 80 2 chr12 50420803 50421010 -70836520 + Lx8 LINE L1 6648 6874 -599 5 969 3323 193 179 35 chr12 50421032 50421890 -70835640 - Lx2B LINE L1 -1 6999 6018 5 969 12832 145 9 9 chr12 50422296 50422850 -70834680 - Lx2B LINE L1 -979 6021 5450 5 969 1610 32 0 0 chr12 50422850 50423038 -70834492 - B2_Mm1a SINE B2 -5 188 1 5 969 12832 158 15 16 chr12 50423038 50424918 -70832612 - Lx2B LINE L1 -428 5449 3583 5 969 204 40 0 0 chr12 50425164 50425189 -70832341 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 969 1147 62 7 0 chr12 50425209 50425355 -70832175 - B1_Mm SINE Alu 0 147 1 5 969 772 229 52 5 chr12 50426760 50426953 -70830577 + RMER1B Other Other 856 1057 -9 5 969 1638 211 68 14 chr12 50427401 50427768 -70829762 - MT2A LTR ERVL -76 525 5 5 969 5477 111 1 0 chr12 50428070 50428852 -70828678 - L1_Mus1 LINE L1 -2 6565 5783 5 969 470 98 0 24 chr12 50428879 50428963 -70828567 - L1Md_F2 LINE L1 0 6582 6501 5 969 29171 97 65 3 chr12 50428963 50434212 -70823318 - L1VL1 LINE L1 -86 5797 217 5 969 304 421 0 8 chr12 50434598 50434720 -70822810 - PB1 SINE Alu -6 121 1 5 969 1285 140 35 4 chr12 50434950 50435180 -70822350 - Lx LINE L1 -6 6648 6412 5 969 233 281 108 68 chr12 50436040 50436216 -70821314 + RNLTR23 LTR ERVK 460 642 0 5 969 325 312 30 55 chr12 50436974 50437138 -70820392 + L1MD LINE L1 4760 4922 -1224 5 969 1583 158 40 14 chr12 50437148 50437424 -70820106 + ORR1A4 LTR MaLR 5 287 -42 5 969 927 71 55 0 chr12 50437435 50437562 -70819968 + B2_Mm2 SINE B2 3 136 -59 5 969 304 156 0 0 chr12 50437560 50437605 -70819925 + ORR1A4 LTR MaLR 277 321 -8 5 969 227 323 67 48 chr12 50437662 50437766 -70819764 + MIRc SINE MIR 51 156 -112 5 969 215 250 70 93 chr12 50437939 50438111 -70819419 - L3 LINE CR1 -3366 1123 956 5 969 322 243 194 9 chr12 50437974 50438122 -70819408 + MIR SINE MIR 9 190 -86 5 969 496 234 11 0 chr12 50438682 50438776 -70818754 - B3A SINE B2 -102 96 2 5 969 1128 82 0 0 chr12 50439437 50439583 -70817947 + B1_Mm SINE Alu 1 146 -1 5 969 7208 88 5 5 chr12 50440034 50441030 -70816500 - L1Md_F2 LINE L1 0 6585 5590 5 969 8300 30 1 2 chr12 50441059 50442550 -70814980 - L1Md_A LINE L1 -1 6581 5094 5 969 16144 70 1 32 chr12 50442532 50445614 -70811916 - L1Md_A LINE L1 -2509 3374 389 5 969 13044 129 55 71 chr12 50445624 50448733 -70808797 - L1Md_F2 LINE L1 -314 5566 1974 5 969 185 0 40 0 chr12 50448733 50448758 -70808772 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 969 13044 92 6 98 chr12 50448758 50448879 -70808651 - L1Md_F2 LINE L1 -3906 1980 1894 5 969 6032 97 12 26 chr12 50448879 50449964 -70807566 - L1Md_F2 LINE L1 -4458 1428 255 5 969 327 350 62 19 chr12 50450178 50450388 -70807142 - L2 LINE L2 -339 3080 2862 5 969 195 402 84 22 chr12 50450414 50450592 -70806938 - L2 LINE L2 -1890 1529 1341 5 969 31212 115 16 50 chr12 50450727 50452637 -70804893 + L1Md_F2 LINE L1 208 2068 -3815 5 969 8431 37 0 4 chr12 50452637 50453570 -70803960 - RLTR13B3 LTR ERVK 0 929 1 5 969 31212 80 8 36 chr12 50453570 50453740 -70803790 + L1Md_F2 LINE L1 2069 2088 -3795 5 969 8886 36 1 0 chr12 50453740 50454734 -70802796 + L1Md_T LINE L1 5587 6581 -1 5 969 31212 80 8 36 chr12 50454734 50458224 -70799306 + L1Md_F2 LINE L1 2089 5586 -297 5 969 7589 55 71 0 chr12 50458224 50459153 -70798377 + L1Md_F2 LINE L1 5587 6581 -1 5 969 296 307 0 0 chr12 50459210 50459285 -70798245 + RMER30 DNA MER1_type 7 81 -121 5 969 375 273 11 130 chr12 50459340 50459525 -70798005 - RSINE1 SINE B4 0 165 3 5 969 337 340 0 0 chr12 50459525 50459622 -70797908 + RMER30 DNA MER1_type 104 200 -2 5 969 239 314 81 48 chr12 50459795 50459919 -70797611 + L2c LINE L2 3260 3387 0 5 969 476 32 0 16 chr12 50460110 50460173 -70797357 + (TAA)n Simple_repeat Simple_repeat 1 62 0 5 969 332 291 32 84 chr12 50460199 50460353 -70797177 + RSINE1 SINE B4 20 165 0 5 969 396 0 0 0 chr12 50460353 50460397 -70797133 + (TAA)n Simple_repeat Simple_repeat 3 46 0 5 969 702 0 0 0 chr12 50460397 50460475 -70797055 + (GAA)n Simple_repeat Simple_repeat 2 79 0 5 969 212 316 130 13 chr12 50460532 50460609 -70796921 + B1F SINE Alu 11 96 -53 5 969 264 149 0 0 chr12 50460719 50460766 -70796764 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 5 969 1053 108 126 6 chr12 50460809 50460976 -70796554 - B2_Mm2 SINE B2 -8 187 1 5 969 5582 176 63 90 chr12 50461096 50462591 -70794939 + L1_Mur3 LINE L1 2139 3593 -2287 5 121 425 249 96 24 chr12 50462588 50462793 -70794737 + Lx4B LINE L1 6753 7050 -8 5 970 17761 89 19 6 chr12 50462826 50466450 -70791080 - Lx3_Mus LINE L1 0 7009 3343 5 970 5605 151 80 11 chr12 50466424 50467790 -70789740 - Lx3_Mus LINE L1 -601 5276 4224 5 970 868 260 9 19 chr12 50467883 50468095 -70789435 + B3 SINE B2 4 213 -3 5 970 791 285 67 39 chr12 50468217 50468502 -70789028 - MTE2a LTR MaLR -2 377 85 5 970 1810 227 33 5 chr12 50468508 50469022 -70788508 - Lx6 LINE L1 -1426 6034 5511 5 970 1319 128 0 5 chr12 50469078 50469266 -70788264 + B2_Mm2 SINE B2 2 188 -7 5 970 237 350 20 49 chr12 50469590 50469692 -70787838 + L2a LINE L2 3319 3417 -9 5 970 1271 82 6 0 chr12 50470602 50470773 -70786757 - L1_Mus4 LINE L1 -7 6629 6458 5 970 270 171 212 35 chr12 50470773 50470858 -70786672 + Lx9 LINE L1 7538 7637 -7 5 970 349 135 22 0 chr12 50471595 50471684 -70785846 + (TG)n Simple_repeat Simple_repeat 1 91 0 5 970 21 36 0 0 chr12 50471896 50471924 -70785606 + AT_rich Low_complexity Low_complexity 1 28 0 5 970 206 375 0 77 chr12 50472311 50472441 -70785089 - MIR3 SINE MIR -7 201 82 5 970 204 62 62 0 chr12 50474247 50474279 -70783251 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 5 970 203 295 0 50 chr12 50474802 50474902 -70782628 + GA-rich Low_complexity Low_complexity 5 99 0 5 970 471 18 0 0 chr12 50476482 50476538 -70780992 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 970 246 208 0 0 chr12 50478007 50478060 -70779470 + GA-rich Low_complexity Low_complexity 3 55 0 5 970 209 58 37 37 chr12 50479055 50479109 -70778421 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 5 970 191 212 0 48 chr12 50482865 50482969 -70774561 + G-rich Low_complexity Low_complexity 2 100 0 5 970 21 0 0 0 chr12 50484538 50484559 -70772971 + GC_rich Low_complexity Low_complexity 1 21 0 5 970 191 61 0 29 chr12 50484769 50484803 -70772727 + (CGGGG)n Simple_repeat Simple_repeat 2 34 0 5 970 22 56 0 0 chr12 50484980 50485016 -70772514 + GC_rich Low_complexity Low_complexity 1 36 0 5 970 824 46 9 0 chr12 50485156 50485265 -70772265 + (TC)n Simple_repeat Simple_repeat 2 111 0 5 970 216 0 0 0 chr12 50485432 50485456 -70772074 + (CCG)n Simple_repeat Simple_repeat 2 25 0 5 970 267 161 0 0 chr12 50485585 50485641 -70771889 + (CCA)n Simple_repeat Simple_repeat 2 57 0 5 970 316 236 0 9 chr12 50485641 50485752 -70771778 + (CCG)n Simple_repeat Simple_repeat 1 110 0 5 970 282 312 0 0 chr12 50485873 50485966 -70771564 + G-rich Low_complexity Low_complexity 5 97 0 5 970 264 22 67 0 chr12 50488283 50488328 -70769202 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 970 22 35 0 0 chr12 50488631 50488660 -70768870 + AT_rich Low_complexity Low_complexity 1 29 0 5 970 273 29 0 0 chr12 50489324 50489358 -70768172 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 970 30 27 0 0 chr12 50489659 50489696 -70767834 + AT_rich Low_complexity Low_complexity 1 37 0 5 970 216 0 0 0 chr12 50489881 50489905 -70767625 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 970 23 33 0 0 chr12 50490634 50490664 -70766866 + AT_rich Low_complexity Low_complexity 1 30 0 5 970 681 13 0 0 chr12 50491881 50491959 -70765571 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 970 23 68 0 0 chr12 50494357 50494401 -70763129 + AT_rich Low_complexity Low_complexity 1 44 0 5 970 31 26 0 0 chr12 50495595 50495633 -70761897 + AT_rich Low_complexity Low_complexity 1 38 0 5 970 25 0 0 0 chr12 50496805 50496830 -70760700 + AT_rich Low_complexity Low_complexity 1 25 0 5 970 30 45 0 0 chr12 50497537 50497581 -70759949 + AT_rich Low_complexity Low_complexity 1 44 0 5 970 486 0 0 0 chr12 50499541 50499595 -70757935 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 5 970 297 0 0 0 chr12 50503256 50503289 -70754241 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 970 251 280 88 53 chr12 50503801 50503914 -70753616 - L2c LINE L2 -17 3370 3254 2 970 636 259 25 36 chr12 50504226 50504422 -70753108 - B3A SINE B2 -3 195 2 3 970 391 344 13 26 chr12 50504899 50505054 -70752476 + MER20 DNA MER1_type 66 218 -1 4 970 369 0 0 0 chr12 50505255 50505296 -70752234 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 5 970 3495 5 0 0 chr12 50506536 50506927 -70750603 - L1Md_A LINE L1 0 6582 6192 6 970 356 186 71 97 chr12 50508758 50508871 -70748659 - PB1D9 SINE Alu -8 112 3 7 970 542 353 118 34 chr12 50508873 50509348 -70748182 + MamRep605 Unknown Unknown 15 529 -347 8 970 439 291 43 7 chr12 50509926 50510162 -70747368 + L1MA7 LINE L1 5414 5669 -643 9 970 561 279 114 16 chr12 50510190 50510587 -70746943 + L1MA7 LINE L1 5838 6279 -12 9 970 297 0 0 0 chr12 50511668 50511701 -70745829 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 970 213 177 31 31 chr12 50512184 50512248 -70745282 + T-rich Low_complexity Low_complexity 4 67 0 1 970 432 55 0 0 chr12 50512326 50512381 -70745149 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 970 3961 122 53 3 chr12 50513400 50514023 -70743507 + Lx LINE L1 6001 6654 0 1 970 2625 160 45 2 chr12 50514040 50514509 -70743021 - Lx2 LINE L1 -4 6993 6505 1 970 525 311 15 0 chr12 50514519 50514654 -70742876 - ID_B1 SINE B4 -7 217 81 1 970 225 283 0 48 chr12 50515088 50515151 -70742379 + PB1D10 SINE Alu 36 95 -22 1 970 33 80 0 0 chr12 50515333 50515408 -70742122 + AT_rich Low_complexity Low_complexity 1 75 0 1 970 840 83 141 0 chr12 50515512 50515633 -70741897 + B1_Mus1 SINE Alu 1 138 -10 1 970 363 60 0 0 chr12 50515633 50515683 -70741847 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1 970 333 295 81 95 chr12 50516829 50517039 -70740491 - B4A SINE B4 -83 209 3 2 970 21 57 0 0 chr12 50517111 50517146 -70740384 + AT_rich Low_complexity Low_complexity 1 35 0 2 970 270 0 0 0 chr12 50518568 50518598 -70738932 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 970 890 353 122 26 chr12 50520073 50520908 -70736622 + L2 LINE L2 1149 2063 -1356 2 970 221 95 14 100 chr12 50521133 50521203 -70736327 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 2 970 327 130 0 0 chr12 50521243 50521297 -70736233 + (T)n Simple_repeat Simple_repeat 1 54 0 2 970 222 291 31 0 chr12 50521703 50521830 -70735700 + (TA)n Simple_repeat Simple_repeat 2 132 0 2 970 221 379 119 40 chr12 50521870 50522172 -70735358 + L2 LINE L2 2407 2732 -687 2 970 804 302 9 5 chr12 50522207 50522423 -70735107 - ID_B1 SINE B4 0 224 8 2 970 235 195 81 58 chr12 50522636 50522723 -70734807 + RMER15 LTR ERVL 53 141 -434 2 970 921 291 52 16 chr12 50522849 50523156 -70734374 + RMER15-int LTR ERVL 4262 4579 -420 2 970 333 311 173 30 chr12 50523324 50523526 -70734004 + RMER15 LTR ERVL 298 528 -47 2 970 277 346 80 45 chr12 50523525 50523749 -70733781 + ORR1D2 LTR MaLR 139 370 0 3 970 29 0 0 0 chr12 50523808 50523837 -70733693 + AT_rich Low_complexity Low_complexity 1 29 0 3 970 22 0 0 0 chr12 50523947 50523969 -70733561 + AT_rich Low_complexity Low_complexity 1 22 0 3 970 291 327 36 9 chr12 50524012 50524123 -70733407 + MTE-int LTR MaLR 42 155 -1425 3 970 280 305 24 0 chr12 50524355 50524437 -70733093 - B4A SINE B4 -192 100 17 3 970 1479 332 122 43 chr12 50524437 50525270 -70732260 + MTE-int LTR MaLR 126 1024 -556 3 970 22 35 0 0 chr12 50525604 50525633 -70731897 + AT_rich Low_complexity Low_complexity 1 29 0 3 970 235 297 0 30 chr12 50525818 50525884 -70731646 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 3 970 696 200 0 16 chr12 50525884 50526067 -70731463 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 970 520 329 13 47 chr12 50526531 50526767 -70730763 - RMER15-int LTR ERVL -3264 1735 1508 3 970 289 312 0 9 chr12 50526886 50526996 -70730534 - RMER15-int LTR ERVL -4015 984 876 3 970 640 306 40 40 chr12 50527241 50527490 -70730040 + RMER15 LTR ERVL 310 558 -17 3 970 250 429 8 0 chr12 50527546 50527672 -70729858 + RMER15-int LTR ERVL 200 326 -4673 4 970 233 143 41 0 chr12 50528003 50528052 -70729478 - L1_Rod LINE L1 -6490 682 632 4 970 737 237 27 12 chr12 50528089 50528278 -70729252 + L1_Rod LINE L1 1170 1361 -4486 4 970 3021 74 22 0 chr12 50528278 50528682 -70728848 + L1_Mus1 LINE L1 6155 6567 0 4 970 728 279 34 48 chr12 50528682 50528822 -70728708 + L1_Rod LINE L1 1362 1493 -4354 4 970 1685 284 35 20 chr12 50528820 50529419 -70728111 - L1_Rod LINE L1 -1430 4417 3810 4 970 346 355 53 0 chr12 50529447 50529599 -70727931 - RSINE1 SINE B4 -4 161 2 4 970 5003 111 61 8 chr12 50530130 50530921 -70726609 - Lx3A LINE L1 -3 6978 6146 4 970 641 311 28 17 chr12 50532477 50532635 -70724895 + B3 SINE B2 1 163 -53 4 970 447 19 0 0 chr12 50532635 50532687 -70724843 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 970 641 311 28 17 chr12 50532687 50532708 -70724822 + B3 SINE B2 164 182 -34 4 970 237 196 0 0 chr12 50532708 50532764 -70724766 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 970 3061 252 42 26 chr12 50534227 50534972 -70722558 + L1_Rod LINE L1 733 1475 -4372 5 970 3077 138 31 69 chr12 50534972 50535580 -70721950 - RMER4B LTR ERVK 0 585 1 5 970 3061 230 46 41 chr12 50535580 50535664 -70721866 + L1_Rod LINE L1 1476 1560 -4287 5 970 215 31 31 0 chr12 50535664 50535696 -70721834 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 970 3061 230 46 41 chr12 50535696 50536067 -70721463 + L1_Rod LINE L1 1561 1961 -3886 5 970 342 0 0 0 chr12 50536067 50536105 -70721425 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 5 970 3061 230 46 41 chr12 50536105 50536333 -70721197 + L1_Rod LINE L1 1962 2189 -3658 5 970 1381 232 21 0 chr12 50536419 50536699 -70720831 - MT2A LTR ERVL -118 415 130 5 970 33817 82 12 5 chr12 50536722 50543087 -70714443 - L1Md_F2 LINE L1 -3 6579 170 5 970 376 303 109 0 chr12 50543201 50543460 -70714070 + L1MA9 LINE L1 5830 6116 -196 5 970 240 260 0 0 chr12 50543701 50543751 -70713779 - ID4_ SINE ID -4 79 30 5 970 217 305 0 63 chr12 50543703 50543766 -70713764 - ID SINE ID -146 78 20 5 970 346 279 155 64 chr12 50543915 50544008 -70713522 - L1MC4 LINE L1 -1033 7009 6911 5 970 512 284 49 7 chr12 50544008 50544150 -70713380 - B1_Mur2 SINE Alu 0 149 2 6 970 346 286 129 52 chr12 50544150 50544382 -70713148 - L1MC4 LINE L1 -1132 6910 6623 5 970 510 61 0 0 chr12 50545033 50545099 -70712431 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 6 970 1141 68 0 7 chr12 50545101 50545248 -70712282 - B1_Mm SINE Alu -1 146 1 6 970 381 292 122 10 chr12 50545274 50545478 -70712052 - L1MEc LINE L1 -5108 1292 1066 6 970 2490 68 0 0 chr12 50545586 50545908 -70711622 - L1_Mus1 LINE L1 -1 6566 6245 6 970 559 288 20 20 chr12 50546474 50546623 -70710907 + ID_B1 SINE B4 76 224 0 6 970 576 256 0 0 chr12 50546901 50547018 -70710512 - B1_Mus1 SINE Alu -21 127 11 6 970 1666 186 61 104 chr12 50548023 50548540 -70708990 - RMER4A LTR ERVK 0 585 30 6 970 6979 116 15 4 chr12 50548540 50549597 -70707933 - Lx2 LINE L1 0 6997 5929 6 970 1666 178 35 113 chr12 50549597 50549628 -70707902 - RMER4A LTR ERVK -437 29 1 6 970 22 35 0 0 chr12 50549907 50549936 -70707594 + AT_rich Low_complexity Low_complexity 1 29 0 6 970 3984 45 2 2 chr12 50553260 50553745 -70703785 + L1Md_F2 LINE L1 6084 6568 -14 7 970 22 0 0 0 chr12 50553780 50553802 -70703728 + AT_rich Low_complexity Low_complexity 1 22 0 7 970 528 136 0 0 chr12 50554620 50554708 -70702822 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 970 371 339 92 75 chr12 50554726 50555032 -70702498 - MLT1E3 LTR MaLR -220 404 94 7 970 282 342 17 51 chr12 50555919 50556036 -70701494 + PB1D7 SINE Alu 2 114 -6 7 970 218 175 0 73 chr12 50556078 50556146 -70701384 + (CATA)n Simple_repeat Simple_repeat 4 66 0 7 970 491 45 0 15 chr12 50557307 50557374 -70700156 + (GGGAGA)n Simple_repeat Simple_repeat 2 67 0 7 970 818 186 26 37 chr12 50557541 50557731 -70699799 - B2_Mm2 SINE B2 -6 189 2 7 970 446 241 26 44 chr12 50557962 50558075 -70699455 + PB1D10 SINE Alu 6 116 -1 7 970 261 0 0 0 chr12 50558201 50558230 -70699300 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 7 970 2881 70 3 0 chr12 50558548 50558921 -70698609 - L1_Mus1 LINE L1 0 6567 6194 8 970 260 32 0 0 chr12 50558921 50558952 -70698578 + L1_Mus1 LINE L1 5801 5831 -736 8 970 1645 131 131 29 chr12 50559314 50559540 -70697990 - Lx2 LINE L1 -2 6995 6757 8 970 336 24 0 0 chr12 50559540 50559581 -70697949 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 8 970 1645 131 131 29 chr12 50559581 50559668 -70697862 - Lx2 LINE L1 -241 6756 6650 8 970 7016 227 39 21 chr12 50559750 50561924 -70695606 - Lx6 LINE L1 -21 7439 5220 8 970 2491 158 250 62 chr12 50561923 50562678 -70694852 - Lx6 LINE L1 -1032 4848 3952 8 970 2998 210 43 31 chr12 50562677 50563654 -70693876 - Lx6 LINE L1 -3860 2020 1050 8 970 3101 17 0 0 chr12 50563654 50564000 -70693530 + ORR1A0 LTR MaLR 1 346 0 8 970 1061 201 18 25 chr12 50564000 50564167 -70693363 - Lx6 LINE L1 -6613 1115 916 8 970 264 367 31 17 chr12 50564231 50564525 -70693005 - Lx6 LINE L1 -7341 387 90 8 970 228 193 35 0 chr12 50564538 50564595 -70692935 - L1MA10 LINE L1 -2 6332 6274 8 970 504 254 36 22 chr12 50564755 50564892 -70692638 + B1_Mur1 SINE Alu 3 141 -8 8 970 224 286 20 20 chr12 50564997 50565097 -70692433 + CT-rich Low_complexity Low_complexity 2 101 0 8 970 21 0 0 0 chr12 50565687 50565708 -70691822 + AT_rich Low_complexity Low_complexity 1 21 0 8 970 378 0 0 0 chr12 50565853 50565895 -70691635 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 970 246 342 27 0 chr12 50565975 50566048 -70691482 + ID4_ SINE ID 1 75 -8 9 970 21 36 0 0 chr12 50566528 50566556 -70690974 + AT_rich Low_complexity Low_complexity 1 28 0 9 970 1044 76 0 0 chr12 50566776 50566907 -70690623 + B1_Mus1 SINE Alu 2 132 -16 9 970 384 308 150 61 chr12 50566907 50567187 -70690343 - MT2A LTR ERVL -213 320 16 9 970 1729 120 51 0 chr12 50568375 50568649 -70688881 + L1_Mus3 LINE L1 6342 6629 -9 9 970 24 0 0 0 chr12 50569066 50569090 -70688440 + AT_rich Low_complexity Low_complexity 1 24 0 9 970 630 0 0 0 chr12 50569435 50569505 -70688025 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 9 970 477 50 0 0 chr12 50569505 50569565 -70687965 + (TC)n Simple_repeat Simple_repeat 2 61 0 9 970 383 286 68 44 chr12 50570137 50570294 -70687236 + B3A SINE B2 1 148 -45 9 970 486 0 0 0 chr12 50570294 50570348 -70687182 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 970 276 91 0 0 chr12 50570348 50570391 -70687139 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 970 300 290 39 100 chr12 50570391 50570412 -70687118 + B2_Mm1t SINE B2 149 168 -25 9 970 1338 224 72 10 chr12 50570803 50571096 -70686434 - Lx7 LINE L1 -846 6850 6540 1 970 225 0 0 0 chr12 50571115 50571140 -70686390 + (GGGAGA)n Simple_repeat Simple_repeat 5 29 0 1 970 344 169 0 0 chr12 50571140 50571199 -70686331 + Lx7 LINE L1 6893 6951 -745 1 970 2259 226 15 74 chr12 50571196 50571856 -70685674 + Lx7 LINE L1 7072 7692 -4 1 970 367 291 77 10 chr12 50572118 50572222 -70685308 + PB1D7 SINE Alu 9 119 -1 1 970 23 0 0 0 chr12 50572419 50572442 -70685088 + AT_rich Low_complexity Low_complexity 1 23 0 1 970 1139 81 0 0 chr12 50572479 50572627 -70684903 - B1_Mus1 SINE Alu 0 148 1 1 970 192 77 0 0 chr12 50572632 50572658 -70684872 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1 970 6278 71 35 19 chr12 50572677 50573036 -70684494 - L1Md_F2 LINE L1 0 6582 6200 1 970 3434 18 5 0 chr12 50573036 50573430 -70684100 - MTA_Mm LTR MaLR 0 396 1 1 970 6278 71 35 19 chr12 50573430 50573944 -70683586 - L1Md_F2 LINE L1 -383 6199 5695 1 970 360 0 0 0 chr12 50575831 50575871 -70681659 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 970 641 76 0 11 chr12 50576065 50576158 -70681372 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 970 23 0 0 0 chr12 50577063 50577086 -70680444 + AT_rich Low_complexity Low_complexity 1 23 0 1 970 1192 35 7 0 chr12 50577448 50577593 -70679937 + B1_Mm SINE Alu 1 146 -1 1 970 982 254 24 0 chr12 50579648 50579853 -70677677 + B3 SINE B2 6 215 -1 1 970 330 145 65 13 chr12 50583835 50583989 -70673541 + (TG)n Simple_repeat Simple_repeat 1 162 0 1 970 21 71 0 0 chr12 50584734 50584776 -70672754 + AT_rich Low_complexity Low_complexity 1 42 0 1 970 273 57 0 0 chr12 50585653 50585688 -70671842 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 970 279 214 0 0 chr12 50586493 50586563 -70670967 + T-rich Low_complexity Low_complexity 1 70 0 1 970 465 34 0 0 chr12 50586563 50586622 -70670908 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 970 766 265 33 6 chr12 50586623 50586805 -70670725 - B3 SINE B2 -29 187 1 1 970 7259 74 2 3 chr12 50587038 50588335 -70669195 - L1Md_F2 LINE L1 0 6582 5288 1 970 7776 69 0 2 chr12 50588339 50589791 -70667739 - L1Md_F2 LINE L1 0 6582 5134 1 970 26 30 0 0 chr12 50590292 50590325 -70667205 + AT_rich Low_complexity Low_complexity 1 33 0 1 970 224 278 19 0 chr12 50590667 50590721 -70666809 - ID_B1 SINE B4 -71 153 99 1 970 231 259 51 17 chr12 50590677 50590736 -70666794 - B1F2 SINE Alu -87 62 2 1 970 247 211 103 17 chr12 50590702 50590760 -70666770 - ID4_ SINE ID -10 73 11 1 970 1047 122 0 0 chr12 50591253 50591401 -70666129 + B1_Mus1 SINE Alu 1 148 0 1 970 873 138 0 46 chr12 50591446 50591598 -70665932 - Lx2 LINE L1 -648 6349 6205 1 970 4360 104 13 52 chr12 50591598 50592297 -70665233 + Lx2 LINE L1 6325 6996 -1 1 970 567 0 0 0 chr12 50593085 50593148 -70664382 + (TTTTA)n Simple_repeat Simple_repeat 3 65 0 1 970 260 133 0 16 chr12 50593305 50593366 -70664164 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 970 534 352 21 34 chr12 50593395 50593633 -70663897 - B4A SINE B4 -24 268 34 1 971 244 236 132 22 chr12 50593961 50594052 -70663478 - MIR SINE MIR -55 207 107 1 971 2900 151 77 99 chr12 50594411 50595116 -70662414 + RMER6C LTR ERVK 1 689 -1 1 971 27 100 0 0 chr12 50595380 50595470 -70662060 + AT_rich Low_complexity Low_complexity 1 90 0 1 971 625 291 56 17 chr12 50596193 50596397 -70661133 - B3 SINE B2 0 216 1 1 971 1069 68 0 52 chr12 50596565 50596720 -70660810 + B1_Mm SINE Alu 1 147 0 1 971 7525 48 3 2 chr12 50596914 50597842 -70659688 + L1Md_F2 LINE L1 5653 6581 -1 1 971 944 174 37 0 chr12 50597892 50598053 -70659477 + Lx4A LINE L1 6755 6921 -137 1 971 354 220 140 0 chr12 50598086 50598186 -70659344 + MTEa LTR MaLR 266 379 0 1 971 365 280 163 3 chr12 50598269 50598563 -70658967 + L1MC4a LINE L1 5953 6293 -1589 1 971 436 241 120 0 chr12 50599575 50599683 -70657847 + B3 SINE B2 4 124 -92 1 971 594 68 0 0 chr12 50599713 50599801 -70657729 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 971 249 98 0 0 chr12 50600466 50600507 -70657023 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1 971 378 0 0 0 chr12 50600535 50600577 -70656953 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 971 3170 92 4 7 chr12 50601088 50601538 -70655992 + L1_Mus3 LINE L1 6190 6638 0 1 971 12409 26 1 3 chr12 50601572 50603732 -70653798 - L1Md_T LINE L1 -1 6581 4426 1 971 222 37 0 0 chr12 50604033 50604060 -70653470 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 971 341 330 0 0 chr12 50604595 50604683 -70652847 + MTD LTR MaLR 24 111 -310 1 971 492 86 0 0 chr12 50604684 50604754 -70652776 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 971 226 305 35 65 chr12 50604776 50604976 -70652554 - Lx7 LINE L1 -20 7676 7483 1 971 428 341 29 6 chr12 50604985 50605156 -70652374 - Lx7 LINE L1 -396 7300 7126 1 971 5230 209 26 20 chr12 50605367 50606401 -70651129 - Lx5 LINE L1 -3 7047 6008 1 971 2499 298 27 22 chr12 50606413 50607192 -70650338 - Lx7 LINE L1 -587 7109 6327 1 971 791 253 163 19 chr12 50607210 50607480 -70650050 + MTD LTR MaLR 110 418 -1 1 971 1151 237 97 13 chr12 50607984 50608283 -70649247 + Lx2B LINE L1 6672 6995 -5 1 971 26 50 0 0 chr12 50608607 50608647 -70648883 + AT_rich Low_complexity Low_complexity 1 40 0 1 971 206 247 38 38 chr12 50609034 50609114 -70648416 - MIR SINE MIR -149 113 34 1 971 24 32 0 0 chr12 50609476 50609507 -70648023 + AT_rich Low_complexity Low_complexity 1 31 0 1 971 184 104 20 40 chr12 50610792 50610842 -70646688 + (TTATA)n Simple_repeat Simple_repeat 1 49 0 1 971 231 327 101 18 chr12 50612930 50613039 -70644491 + MIRb SINE MIR 120 237 -31 1 971 26 30 0 0 chr12 50613046 50613079 -70644451 + AT_rich Low_complexity Low_complexity 1 33 0 1 971 187 366 122 36 chr12 50614005 50614226 -70643304 + L4 LINE RTE 270 509 -1520 1 971 1164 74 0 0 chr12 50614569 50614717 -70642813 - B1_Mus1 SINE Alu 0 148 1 1 971 4922 220 50 64 chr12 50614718 50616214 -70641316 - Lx7 LINE L1 -25 7671 6198 1 971 666 37 0 0 chr12 50616216 50616297 -70641233 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 971 180 0 0 0 chr12 50616298 50616318 -70641212 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 971 1465 226 2 110 chr12 50616320 50616737 -70640793 + ORR1C2 LTR MaLR 8 379 -5 1 971 4268 174 141 8 chr12 50616752 50617955 -70639575 - Lx7 LINE L1 -1578 6118 4749 1 971 2900 231 47 89 chr12 50617979 50619257 -70638273 - RMER1A Other Other 0 1030 16 1 971 3194 95 52 4 chr12 50619265 50619730 -70637800 + RLTR1C LTR ERV1 1 487 -16 1 971 1116 268 7 15 chr12 50619755 50620024 -70637506 - RMER1B Other Other -796 270 4 1 971 2232 176 21 0 chr12 50620079 50620546 -70636984 - Lx7 LINE L1 -1987 3893 3417 1 971 1180 154 166 0 chr12 50620553 50620806 -70636724 + RMER1B Other Other 772 1066 0 1 971 1136 95 0 0 chr12 50620933 50621080 -70636450 - B1_Mus2 SINE Alu 0 147 1 1 971 185 196 22 0 chr12 50622152 50622198 -70635332 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 971 1084 173 11 88 chr12 50622415 50622700 -70634830 + Lx5 LINE L1 4469 4731 -1146 1 971 33336 70 1 16 chr12 50622706 50628053 -70629477 + L1Md_F LINE L1 488 5750 -133 1 971 36588 7 1 0 chr12 50628057 50633408 -70624122 + L1Md_A LINE L1 233 5586 -297 1 971 8725 19 0 0 chr12 50633408 50634404 -70623126 + L1Md_A LINE L1 5587 6582 0 1 971 6545 63 2 4 chr12 50634406 50635251 -70622279 + L1Md_F2 LINE L1 5739 6582 0 1 971 22951 212 20 21 chr12 50635251 50636881 -70620649 + Lx5 LINE L1 5575 7044 -6 1 971 3450 83 24 34 chr12 50636904 50637439 -70620091 - L1_Mur1 LINE L1 -446 5440 4911 1 971 5358 77 3 0 chr12 50637439 50638138 -70619392 + Lx3_Mus LINE L1 6309 7009 0 1 971 26 0 0 0 chr12 50638138 50638164 -70619366 + AT_rich Low_complexity Low_complexity 1 26 0 1 971 504 280 172 0 chr12 50638178 50638335 -70619195 + B3 SINE B2 28 211 -5 1 971 28 29 0 0 chr12 50638347 50638382 -70619148 + AT_rich Low_complexity Low_complexity 1 35 0 1 971 301 260 52 0 chr12 50638534 50638630 -70618900 - L1MA6 LINE L1 -316 5984 5884 1 971 30 0 0 0 chr12 50639926 50639956 -70617574 + AT_rich Low_complexity Low_complexity 1 30 0 1 971 431 326 25 60 chr12 50639961 50640160 -70617370 - B3A SINE B2 -5 193 2 1 971 476 105 13 0 chr12 50640162 50640238 -70617292 + (TTTTC)n Simple_repeat Simple_repeat 2 78 0 1 971 25 75 0 0 chr12 50640238 50640291 -70617239 + AT_rich Low_complexity Low_complexity 1 53 0 1 971 216 0 0 0 chr12 50640315 50640339 -70617191 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 971 460 290 0 58 chr12 50640530 50640669 -70616861 - B1_Mur3 SINE Alu 0 149 19 1 971 388 145 0 0 chr12 50640884 50640953 -70616577 - L1Md_F2 LINE L1 -12 6570 6502 1 971 3312 71 58 4 chr12 50641119 50641626 -70615904 - L1_Mus3 LINE L1 0 6638 6147 1 971 1446 94 5 0 chr12 50641627 50641840 -70615690 + L1_Mus3 LINE L1 5926 6139 -499 1 971 519 312 126 60 chr12 50641925 50642128 -70615402 - Lx9 LINE L1 -15 7629 7436 1 971 288 0 0 0 chr12 50642128 50642160 -70615370 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 971 519 312 126 60 chr12 50642160 50642543 -70614987 - Lx9 LINE L1 -209 7435 7005 1 971 293 342 38 18 chr12 50642756 50642881 -70614649 + MIR SINE MIR 33 158 -110 1 971 200 381 75 6 chr12 50643010 50643171 -70614359 + L2 LINE L2 2320 2491 -928 1 971 1339 136 29 8 chr12 50643681 50643925 -70613605 + Lx2A1 LINE L1 6757 7005 -3 1 971 21 0 0 0 chr12 50643958 50643979 -70613551 + AT_rich Low_complexity Low_complexity 1 21 0 1 971 25 75 0 0 chr12 50644039 50644092 -70613438 + AT_rich Low_complexity Low_complexity 1 53 0 1 971 3720 110 52 2 chr12 50644144 50644745 -70612785 + L1Md_F LINE L1 528 1153 -5466 1 971 261 0 0 0 chr12 50644745 50644774 -70612756 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 971 23055 90 4 12 chr12 50644774 50648000 -70609530 + L1Md_F LINE L1 1086 4385 -1501 1 971 5175 73 0 0 chr12 50648000 50648671 -70608859 + L1Md_T LINE L1 5911 6581 -1 1 971 23055 90 4 12 chr12 50648671 50649013 -70608517 + L1Md_F LINE L1 4386 4729 -1157 1 971 4035 104 0 0 chr12 50649014 50649631 -70607899 - L1_Mm LINE L1 -2118 3765 3149 1 971 26803 50 105 3 chr12 50649650 50655277 -70602253 - L1Md_T LINE L1 0 6582 333 2 971 2350 268 71 56 chr12 50655276 50656239 -70601291 - RMER1C Other Other -32 1310 375 2 971 2206 31 0 0 chr12 50656239 50656527 -70601003 + L1Md_A LINE L1 6315 6582 0 2 971 534 252 0 0 chr12 50656798 50656925 -70600605 - RMER1C Other Other -1102 240 114 2 971 276 229 4 12 chr12 50656925 50657000 -70600530 - MTE-int LTR MaLR -79 1501 1449 2 971 43 0 0 0 chr12 50657017 50657060 -70600470 + AT_rich Low_complexity Low_complexity 1 43 0 2 971 897 317 61 40 chr12 50657135 50657513 -70600017 - MTE-int LTR MaLR -165 1415 1030 2 971 516 269 60 35 chr12 50657533 50657818 -70599712 - L1M2 LINE L1 -1022 5121 4830 2 971 21 0 0 0 chr12 50657840 50657861 -70599669 + AT_rich Low_complexity Low_complexity 1 21 0 2 971 6880 141 36 20 chr12 50657862 50659033 -70598497 - Lx3B LINE L1 -2 6971 5775 2 971 1180 68 0 0 chr12 50659033 50659179 -70598351 + B1_Mm SINE Alu 1 146 -1 2 971 6880 141 36 20 chr12 50659179 50659207 -70598323 - Lx3B LINE L1 -1199 5774 5753 2 971 3741 97 21 3 chr12 50659207 50659789 -70597741 + Lx3B LINE L1 5174 5765 -121 2 971 242 342 17 42 chr12 50660669 50660788 -70596742 - MIR SINE MIR -7 255 140 2 971 252 137 0 0 chr12 50661297 50661348 -70596182 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 971 7035 72 8 1 chr12 50661391 50662505 -70595025 - L1Md_F2 LINE L1 -20 6562 5439 2 971 3091 47 18 0 chr12 50662520 50662904 -70594626 - L1Md_F3 LINE L1 0 6584 6194 2 971 4964 39 0 2 chr12 50662903 50663496 -70594034 + L1Md_F2 LINE L1 5986 6577 -5 2 971 846 284 66 21 chr12 50663496 50663830 -70593700 - Lx9 LINE L1 -428 7216 6868 2 971 1314 235 70 28 chr12 50665470 50665829 -70591701 + ORR1D1 LTR MaLR 1 374 0 2 971 270 0 0 0 chr12 50665957 50665987 -70591543 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2 971 8485 128 32 29 chr12 50665987 50667119 -70590411 - Lx2A LINE L1 -15 6993 5859 2 971 225 0 0 0 chr12 50667119 50667144 -70590386 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 971 8485 158 19 10 chr12 50667144 50667964 -70589566 - Lx2A LINE L1 -1150 5858 5022 2 971 873 243 118 48 chr12 50668135 50668514 -70589016 - RLTR26 LTR ERVK -199 443 5 2 971 702 122 3 3 chr12 50668518 50668625 -70588905 - Lx2B LINE L1 -368 5932 5802 2 971 255 176 0 0 chr12 50668609 50668660 -70588870 + L1_Mm LINE L1 4771 4821 -1062 2 971 435 116 0 14 chr12 50668660 50668730 -70588800 + B1_Mm SINE Alu 79 147 0 2 971 328 298 9 63 chr12 50668783 50668894 -70588636 - PB1D10 SINE Alu -3 114 10 2 971 542 331 13 13 chr12 50668801 50668949 -70588581 - ID_B1 SINE B4 -40 184 37 2 971 860 247 141 18 chr12 50668949 50669275 -70588255 + MTD LTR MaLR 1 366 -53 2 971 288 77 0 0 chr12 50669275 50669314 -70588216 + (A)n Simple_repeat Simple_repeat 1 39 0 2 971 2039 172 31 22 chr12 50669315 50669730 -70587800 + L1_Mur2 LINE L1 4830 5248 -629 2 971 726 278 8 63 chr12 50669986 50670224 -70587306 + Lx9 LINE L1 6967 7191 -453 2 971 2276 294 68 24 chr12 50670476 50671282 -70586248 + Lx8 LINE L1 6546 7387 -86 2 971 619 296 83 47 chr12 50671333 50671844 -70585686 + L1M2 LINE L1 5146 5669 -631 2 971 648 26 0 0 chr12 50671874 50671952 -70585578 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 971 24 32 0 0 chr12 50672082 50672113 -70585417 + AT_rich Low_complexity Low_complexity 1 31 0 2 971 1450 277 45 25 chr12 50672113 50672598 -70584932 - Lx9 LINE L1 -617 7027 6533 2 971 1274 207 55 8 chr12 50672621 50672874 -70584656 - Lx5 LINE L1 -3 7047 6783 2 971 364 290 44 25 chr12 50672889 50673048 -70584482 + Lx9 LINE L1 7057 7218 -426 2 971 810 116 0 0 chr12 50673051 50673180 -70584350 + (TC)n Simple_repeat Simple_repeat 2 130 0 2 971 811 96 15 7 chr12 50673206 50673342 -70584188 - L1_Mus4 LINE L1 0 6636 6500 2 971 1954 111 14 0 chr12 50673342 50673622 -70583908 + L1_Mm LINE L1 5387 5670 -213 2 971 293 322 76 0 chr12 50673612 50673730 -70583800 + Lx9 LINE L1 7201 7327 -317 2 971 608 26 13 0 chr12 50673751 50673829 -70583701 + (GA)n Simple_repeat Simple_repeat 1 79 0 2 971 623 267 124 110 chr12 50673849 50674375 -70583155 - MT2A LTR ERVL 0 533 1 2 971 541 258 61 0 chr12 50674936 50675068 -70582462 - B1_Mur2 SINE Alu -7 142 3 2 971 355 290 63 121 chr12 50675068 50675168 -70582362 - B4 SINE B4 -66 213 2 2 971 4235 53 2 8 chr12 50675296 50675811 -70581719 - LTRIS3 LTR ERV1 0 512 1 2 971 1250 266 28 0 chr12 50675966 50676255 -70581275 + MTD LTR MaLR 21 317 -102 2 971 820 286 50 46 chr12 50676252 50676575 -70580955 + MTC-int LTR MaLR 6 329 -929 2 971 1726 111 58 41 chr12 50676584 50677121 -70580409 - Lx LINE L1 -1 6653 6006 2 971 422 282 0 39 chr12 50677124 50677253 -70580277 + MTD-int LTR MaLR 206 329 -929 2 971 846 287 32 39 chr12 50677257 50677573 -70579957 - Lx3C LINE L1 -98 6878 6283 2 971 1668 266 93 39 chr12 50677587 50678377 -70579153 + MTD-int LTR MaLR 328 1258 0 2 971 1232 286 91 11 chr12 50678377 50678752 -70578778 + MTD LTR MaLR 1 405 -14 2 971 709 325 46 13 chr12 50678769 50679189 -70578341 - L1MA4 LINE L1 -425 5875 5457 2 971 209 159 0 22 chr12 50681964 50682009 -70575521 + (CAT)n Simple_repeat Simple_repeat 1 44 0 2 971 35 0 0 0 chr12 50682093 50682128 -70575402 + AT_rich Low_complexity Low_complexity 1 35 0 2 971 228 39 0 0 chr12 50682134 50682160 -70575370 + L1Md_A LINE L1 6436 6461 -121 2 971 914 15 0 199 chr12 50682160 50682331 -70575199 + L1Md_A LINE L1 6446 6582 0 2 971 21 0 0 0 chr12 50682331 50682352 -70575178 + AT_rich Low_complexity Low_complexity 1 21 0 2 971 335 316 141 69 chr12 50682363 50682488 -70575042 + L1MB3 LINE L1 4635 4772 -1368 2 971 733 259 60 0 chr12 50682488 50682689 -70574841 + B3 SINE B2 4 216 0 2 971 815 309 104 68 chr12 50682689 50683395 -70574135 + L1MB3 LINE L1 4773 5514 -669 2 971 585 0 0 0 chr12 50683395 50683460 -70574070 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 971 815 296 43 66 chr12 50683460 50683797 -70573733 + L1MB3 LINE L1 5515 5845 -338 2 971 396 332 37 0 chr12 50683816 50684006 -70573524 + L1MB3 LINE L1 5920 6116 -67 2 971 201 258 0 16 chr12 50684029 50684092 -70573438 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 2 971 32 57 0 0 chr12 50684092 50684145 -70573385 + AT_rich Low_complexity Low_complexity 1 53 0 2 971 2130 179 14 17 chr12 50684837 50685258 -70572272 + MTC LTR MaLR 1 420 -1 2 971 4499 84 21 11 chr12 50685768 50686383 -70571147 - L1_Mus1 LINE L1 0 6567 5947 2 971 7127 104 4 1 chr12 50686390 50687470 -70570060 - L1_Mus1 LINE L1 0 6567 5485 2 971 7106 82 6 5 chr12 50687469 50688663 -70568867 - L1Md_F2 LINE L1 -1 6581 5387 2 971 4840 117 6 8 chr12 50688663 50689393 -70568137 + L1_Mus1 LINE L1 5839 6566 -1 2 971 240 326 96 71 chr12 50690105 50690303 -70567227 + MLT1A0 LTR MaLR 1 203 -162 2 971 257 108 0 0 chr12 50690506 50690543 -70566987 + Lx4A LINE L1 5826 5862 -1196 2 971 2548 151 0 8 chr12 50690561 50690949 -70566581 + Lx4A LINE L1 6520 6904 -154 2 971 328 257 214 34 chr12 50690951 50691206 -70566324 - L1M2 LINE L1 -950 5193 4870 2 971 1160 333 7 62 chr12 50691221 50691771 -70565759 + Lx9 LINE L1 6941 7460 -184 2 971 324 354 39 0 chr12 50692385 50692515 -70565015 + B1F SINE Alu 7 141 -8 2 971 590 272 13 32 chr12 50692607 50692805 -70564725 - B3A SINE B2 -6 189 1 2 971 25 0 0 0 chr12 50694105 50694130 -70563400 + AT_rich Low_complexity Low_complexity 1 25 0 2 971 795 335 44 41 chr12 50694130 50694566 -70562964 - Cheshire DNA MER1_type -432 1988 1552 2 971 492 99 0 0 chr12 50694633 50694704 -70562826 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 971 1875 171 0 0 chr12 50694713 50695046 -70562484 - L1VL4 LINE L1 -5463 839 507 2 971 369 0 0 0 chr12 50695184 50695225 -70562305 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 971 303 282 39 0 chr12 50695333 50695436 -70562094 + L1_Mur3 LINE L1 5403 5509 -371 2 971 21 71 0 0 chr12 50695918 50695960 -70561570 + AT_rich Low_complexity Low_complexity 1 42 0 2 971 21 36 0 0 chr12 50697877 50697905 -70559625 + AT_rich Low_complexity Low_complexity 1 28 0 2 971 1022 266 102 40 chr12 50698156 50698508 -70559022 - MTEb LTR MaLR -5 374 1 2 971 1106 352 60 29 chr12 50698508 50698988 -70558542 - MTEb-int LTR MaLR 0 1580 1086 2 971 483 38 62 0 chr12 50698988 50699068 -70558462 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 2 971 1123 65 0 0 chr12 50699092 50699230 -70558300 + B1_Mm SINE Alu 1 138 -9 2 971 3355 149 4 11 chr12 50699250 50699940 -70557590 + Lx2A1 LINE L1 5292 5977 -1023 2 971 4334 135 55 7 chr12 50699931 50700645 -70556885 + Lx2A1 LINE L1 6234 6981 -27 2 971 822 262 93 104 chr12 50700676 50700828 -70556702 + Lx8 LINE L1 7047 7210 -263 2 971 390 21 0 0 chr12 50700828 50700875 -70556655 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 971 213 94 0 0 chr12 50700877 50700909 -70556621 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 971 822 262 93 104 chr12 50700909 50700954 -70556576 + Lx8 LINE L1 7211 7226 -247 2 971 1081 105 0 12 chr12 50700954 50701127 -70556403 + (GAA)n Simple_repeat Simple_repeat 3 173 0 2 971 822 262 93 104 chr12 50701127 50701356 -70556174 + Lx8 LINE L1 7227 7472 -1 2 971 33093 113 38 13 chr12 50701373 50703732 -70553798 + L1Md_F2 LINE L1 248 2644 -3239 2 971 477 0 0 0 chr12 50703732 50703785 -70553745 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 971 33093 80 9 7 chr12 50703785 50707098 -70550432 + L1Md_F2 LINE L1 2645 5975 -607 2 971 35167 51 0 3 chr12 50707098 50712541 -70544989 + L1Md_T LINE L1 69 5589 -297 2 971 8326 39 0 0 chr12 50712541 50713537 -70543993 + L1Md_T LINE L1 5590 6585 0 2 971 4469 94 3 6 chr12 50713542 50714164 -70543366 + L1Md_F2 LINE L1 5963 6582 0 2 971 1655 226 81 10 chr12 50714171 50714555 -70542975 - MTD LTR MaLR -8 411 1 2 971 1150 75 7 0 chr12 50715281 50715427 -70542103 + B1_Mus2 SINE Alu 1 147 0 2 971 1244 273 58 39 chr12 50716002 50716364 -70541166 - MTE2a LTR MaLR -10 369 1 2 971 427 281 9 9 chr12 50716570 50716685 -70540845 + B4A SINE B4 178 292 0 2 971 213 65 0 0 chr12 50717189 50717220 -70540310 + (A)n Simple_repeat Simple_repeat 1 31 0 2 971 203 179 0 0 chr12 50717423 50717462 -70540068 + A-rich Low_complexity Low_complexity 2 40 0 2 971 4062 158 43 26 chr12 50718353 50718620 -70538910 + L1_Mur1 LINE L1 4599 4866 -1020 2 971 678 25 0 0 chr12 50718620 50718700 -70538830 + (GA)n Simple_repeat Simple_repeat 2 81 0 2 971 4062 158 43 26 chr12 50718700 50718846 -70538684 + L1_Mur1 LINE L1 4867 5013 -873 2 971 6496 54 11 0 chr12 50718846 50719666 -70537864 + L1Md_F3 LINE L1 5741 6569 -15 2 971 4062 158 43 26 chr12 50719666 50720063 -70537467 + L1_Mur1 LINE L1 5014 5422 -464 2 971 8727 133 12 5 chr12 50720096 50721460 -70536070 - Lx2B LINE L1 -3 6997 5625 2 971 240 35 0 0 chr12 50721631 50721660 -70535870 + (T)n Simple_repeat Simple_repeat 1 29 0 2 971 1011 309 61 26 chr12 50724324 50724666 -70532864 + MTD LTR MaLR 11 364 -55 3 972 354 225 50 0 chr12 50725967 50726047 -70531483 - URR1B DNA MER1_type -18 207 124 3 972 244 257 167 10 chr12 50726562 50726664 -70530866 + MIRb SINE MIR 29 146 -122 3 972 213 205 0 0 chr12 50726833 50726872 -70530658 + CT-rich Low_complexity Low_complexity 2 40 0 3 972 576 0 0 0 chr12 50727483 50727547 -70529983 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 972 249 33 0 0 chr12 50728120 50728150 -70529380 + (CCCCCA)n Simple_repeat Simple_repeat 5 34 0 3 972 207 234 21 0 chr12 50729217 50729264 -70528266 - MIRm SINE MIR -14 262 215 3 972 588 286 149 75 chr12 50729573 50729894 -70527636 + ORR1E LTR MaLR 15 359 0 3 972 12653 69 5 2 chr12 50730477 50732865 -70524665 - L1Md_F2 LINE L1 -2 6580 4188 3 972 11374 100 3 13 chr12 50732865 50735047 -70522483 - L1Md_F2 LINE L1 -3061 2822 670 3 972 426 20 0 0 chr12 50735753 50735804 -70521726 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 972 568 323 109 23 chr12 50736162 50736428 -70521102 + B4A SINE B4 2 290 -2 3 972 294 29 0 0 chr12 50736496 50736531 -70520999 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 972 29 47 0 0 chr12 50737456 50737499 -70520031 + AT_rich Low_complexity Low_complexity 1 43 0 3 972 905 282 66 25 chr12 50737844 50738208 -70519322 + MTE2b LTR MaLR 1 379 0 3 972 290 305 114 0 chr12 50738386 50738491 -70519039 + PB1 SINE Alu 3 119 -8 3 972 369 0 0 0 chr12 50739728 50739769 -70517761 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 972 362 368 27 41 chr12 50739897 50740118 -70517412 + MLT1E LTR MaLR 409 626 -27 3 972 268 320 126 26 chr12 50740181 50740332 -70517198 - L2a LINE L2 -234 3192 3027 3 972 227 270 51 92 chr12 50740405 50740503 -70517027 + RMER12 LTR ERVK 722 815 -507 3 972 233 260 57 85 chr12 50741173 50741333 -70516197 - MIR SINE MIR -65 143 1 3 972 22 70 0 0 chr12 50741390 50741433 -70516097 + AT_rich Low_complexity Low_complexity 1 43 0 3 972 21 71 0 0 chr12 50741959 50742001 -70515529 + AT_rich Low_complexity Low_complexity 1 42 0 3 972 408 88 0 0 chr12 50742049 50742106 -70515424 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 3 972 381 22 0 0 chr12 50742109 50742155 -70515375 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 972 23 0 0 0 chr12 50742791 50742814 -70514716 + AT_rich Low_complexity Low_complexity 1 23 0 3 972 3967 209 70 42 chr12 50742982 50743992 -70513538 - Lx4B LINE L1 -5 7053 6015 3 972 23 33 0 0 chr12 50744121 50744151 -70513379 + AT_rich Low_complexity Low_complexity 1 30 0 3 972 23 54 0 0 chr12 50744414 50744451 -70513079 + AT_rich Low_complexity Low_complexity 1 37 0 3 972 3546 40 2 0 chr12 50745088 50745514 -70512016 - L1Md_F2 LINE L1 -12 6570 6144 3 972 214 240 0 0 chr12 50746030 50746080 -70511450 + GA-rich Low_complexity Low_complexity 3 52 0 3 972 3066 63 5 0 chr12 50747067 50747465 -70510065 - L1Md_F2 LINE L1 0 6582 6183 3 972 638 253 65 0 chr12 50748469 50748639 -70508891 + Lx9 LINE L1 7106 7286 -358 3 972 1104 90 0 0 chr12 50748679 50748824 -70508706 + B1_Mm SINE Alu 1 145 -2 3 972 236 321 73 0 chr12 50749835 50749944 -70507586 + Lx8 LINE L1 7354 7470 -3 3 972 390 21 0 0 chr12 50750335 50750382 -70507148 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 972 662 0 13 0 chr12 50750382 50750459 -70507071 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 972 468 0 0 0 chr12 50751036 50751088 -70506442 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 972 559 288 73 42 chr12 50751835 50752255 -70505275 - RLTR20D LTR ERVK 0 578 1 3 972 1608 243 44 146 chr12 50752415 50753095 -70504435 + RMER19C LTR ERVK 1 611 0 3 972 837 281 80 50 chr12 50753110 50753481 -70504049 + MT2A LTR ERVL 2 512 -72 3 972 180 0 0 0 chr12 50753481 50753501 -70504029 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 972 507 279 133 31 chr12 50753501 50753552 -70503978 + MT2A LTR ERVL 467 531 -2 3 972 362 383 92 0 chr12 50754004 50754257 -70503273 - L2a LINE L2 -290 3136 2855 3 972 710 329 157 25 chr12 50754309 50754742 -70502788 + MLT1D LTR MaLR 1 490 -15 3 972 220 379 37 29 chr12 50754830 50754966 -70502564 - L2a LINE L2 -746 2673 2537 3 972 280 262 88 69 chr12 50755353 50755387 -70502143 - CYRA11_Mm Unknown Y-chromosome -233 384 253 3 972 709 134 17 8 chr12 50755387 50755507 -70502023 + URR1A DNA MER1_type 56 176 -50 3 972 683 74 11 0 chr12 50755515 50755610 -70501920 + ORR1A1 LTR MaLR 251 346 0 3 972 228 297 94 0 chr12 50755611 50755675 -70501855 - B3A SINE B2 -128 70 1 3 972 1227 156 17 34 chr12 50755682 50755915 -70501615 - Lx4A LINE L1 -60 6998 6770 3 972 772 276 106 35 chr12 50755923 50756289 -70501241 - Lx6 LINE L1 -1322 6151 5725 3 972 378 0 0 0 chr12 50756289 50756331 -70501199 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 972 772 267 90 26 chr12 50756331 50756593 -70500937 - L1MA4 LINE L1 -513 5787 5478 3 972 944 290 58 10 chr12 50757025 50757318 -70500212 - Lx8 LINE L1 -819 6654 6348 3 972 1331 264 219 45 chr12 50757416 50758063 -70499467 - Lx8 LINE L1 -5 7468 6709 3 972 249 57 0 0 chr12 50758064 50758099 -70499431 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 972 1168 56 0 7 chr12 50758102 50758247 -70499283 + B1_Mus1 SINE Alu 3 146 -2 3 972 1148 284 37 24 chr12 50758571 50759109 -70498421 - L1_Mur3 LINE L1 -898 4982 4438 3 972 8039 66 8 2 chr12 50759091 50760822 -70496708 - L1Md_F2 LINE L1 0 6582 4842 3 972 237 272 39 39 chr12 50760852 50760982 -70496548 - L1MA4 LINE L1 -1656 4487 4358 3 972 578 239 161 18 chr12 50763083 50763369 -70494161 - Lx7 LINE L1 0 7696 7370 3 972 453 66 0 0 chr12 50763372 50763433 -70494097 + (GAAA)n Simple_repeat Simple_repeat 1 61 0 3 972 761 172 11 17 chr12 50763434 50763611 -70493919 + GA-rich Low_complexity Low_complexity 3 178 0 3 972 6445 251 28 14 chr12 50763611 50765227 -70492303 - Lx7 LINE L1 -329 7367 5791 3 972 1139 82 0 19 chr12 50765227 50765389 -70492141 - L1_Mus1 LINE L1 -3 6564 6406 3 972 6230 198 35 46 chr12 50765389 50766914 -70490616 - Lx7 LINE L1 -1265 5793 4282 3 972 7149 55 1 15 chr12 50766903 50767826 -70489704 - L1Md_F2 LINE L1 -10 6572 5663 3 972 12076 94 30 1 chr12 50767824 50769598 -70487932 - L1_Mm LINE L1 -1368 4515 2691 3 972 2682 227 14 17 chr12 50769592 50770589 -70486941 - Lx7 LINE L1 -4071 1806 813 3 972 427 211 156 0 chr12 50770906 50771015 -70486515 - L1_Mur3 LINE L1 -3634 2246 2121 3 972 3414 265 90 49 chr12 50771009 50773020 -70484510 + Lx5 LINE L1 4948 7031 -19 3 972 2194 217 95 48 chr12 50773044 50774182 -70483348 - L1_Mur3 LINE L1 -3763 2117 922 3 972 983 57 114 0 chr12 50774245 50774385 -70483145 + L1Md_F2 LINE L1 6404 6559 -23 3 972 459 0 0 0 chr12 50774385 50774436 -70483094 + (TAA)n Simple_repeat Simple_repeat 1 51 0 3 972 454 332 109 26 chr12 50774452 50774764 -70482766 + L1M4 LINE L1 4522 4859 -1287 3 972 1217 258 67 35 chr12 50775278 50775623 -70481907 + ORR1D2 LTR MaLR 3 358 -12 3 972 2631 284 58 55 chr12 50775638 50776751 -70480779 + ORR1D2-int LTR MaLR 17 1370 0 3 972 463 243 88 75 chr12 50776753 50776900 -70480630 + ORR1D2 LTR MaLR 3 151 -219 3 972 13584 194 42 23 chr12 50777317 50779709 -70477821 - Lx5 LINE L1 0 7050 4639 3 972 243 0 0 0 chr12 50779709 50779736 -70477794 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 972 13584 182 35 30 chr12 50779736 50780037 -70477493 - Lx5 LINE L1 -1239 4638 4298 3 972 2775 80 5 23 chr12 50780037 50780432 -70477098 + L1Md_F2 LINE L1 6193 6580 -2 3 972 13584 182 35 30 chr12 50780432 50781829 -70475701 - Lx5 LINE L1 -1580 4297 2895 3 972 2096 241 43 73 chr12 50781830 50782138 -70475392 + RMER19C LTR ERVK 1 284 -327 3 972 2450 106 13 23 chr12 50782138 50782526 -70475004 - Lx2 LINE L1 0 6997 6614 3 972 2096 241 43 73 chr12 50782526 50782571 -70474959 + RMER19C LTR ERVK 285 325 -286 3 972 6502 30 1 1 chr12 50782571 50783342 -70474188 - L1Md_F3 LINE L1 0 6584 5814 3 972 2096 241 43 73 chr12 50783342 50783617 -70473913 + RMER19C LTR ERVK 326 610 -1 3 972 3613 165 19 103 chr12 50783623 50784556 -70472974 - Lx5 LINE L1 -2986 2891 2037 3 972 1082 210 13 11 chr12 50784561 50784869 -70472661 - Lx5 LINE L1 -6457 1271 898 3 972 3608 170 30 28 chr12 50785394 50786084 -70471446 + RLTR17 LTR ERVK 1 692 0 3 972 412 316 14 29 chr12 50786612 50786752 -70470778 + RSINE1 SINE B4 9 146 -19 3 972 366 129 0 0 chr12 50786765 50786827 -70470703 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 972 23 0 0 0 chr12 50787062 50787085 -70470445 + AT_rich Low_complexity Low_complexity 1 23 0 3 972 460 310 9 0 chr12 50787092 50787205 -70470325 - ID_B1 SINE B4 -31 193 80 3 972 2599 118 19 2 chr12 50787233 50787648 -70469882 + BGLII_Mus LTR ERVK 1 422 0 3 972 225 322 68 0 chr12 50787770 50787829 -70469701 - PB1D10 SINE Alu -9 108 46 3 972 684 36 0 0 chr12 50788274 50788357 -70469173 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 972 31 26 0 0 chr12 50788711 50788749 -70468781 + AT_rich Low_complexity Low_complexity 1 38 0 3 972 522 306 0 0 chr12 50788749 50788857 -70468673 + B1_Mur1 SINE Alu 2 109 -40 3 972 422 180 42 73 chr12 50788858 50788954 -70468576 - RLTR20D LTR ERVK -3 502 410 3 972 306 0 0 0 chr12 50788954 50788988 -70468542 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 972 644 283 76 56 chr12 50788997 50789260 -70468270 - RLTR20D LTR ERVK -283 285 1 3 972 513 32 0 0 chr12 50789338 50789401 -70468129 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 972 395 298 34 26 chr12 50789418 50789535 -70467995 - RSINE1 SINE B4 -44 121 4 3 972 307 329 10 1 chr12 50789541 50789657 -70467873 - MLT2B3 LTR ERVL -397 118 3 3 972 468 267 0 0 chr12 50789962 50790048 -70467482 + B1F SINE Alu 13 98 -51 3 972 738 84 0 0 chr12 50790063 50790170 -70467360 + (CAAAA)n Simple_repeat Simple_repeat 4 110 0 3 972 333 0 0 0 chr12 50790523 50790560 -70466970 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 972 345 279 47 0 chr12 50790691 50790820 -70466710 + L1_Mur3 LINE L1 4037 4171 -1709 3 972 467 224 10 0 chr12 50790836 50790934 -70466596 + Lx8 LINE L1 6791 6889 -584 3 972 822 372 19 5 chr12 50790961 50791334 -70466196 + Lx8 LINE L1 6950 7327 -146 3 972 265 291 2 0 chr12 50791338 50791459 -70466071 - Lx9 LINE L1 -501 7143 7060 3 972 23 33 0 0 chr12 50792311 50792341 -70465189 + AT_rich Low_complexity Low_complexity 1 30 0 3 972 3004 79 32 25 chr12 50792726 50793166 -70464364 + L1_Mus3 LINE L1 6192 6634 -4 3 972 25 0 0 0 chr12 50793307 50793332 -70464198 + AT_rich Low_complexity Low_complexity 1 25 0 3 972 291 296 20 0 chr12 50793899 50793997 -70463533 + CT-rich Low_complexity Low_complexity 1 100 0 3 972 933 9 0 0 chr12 50794402 50794508 -70463022 + (TC)n Simple_repeat Simple_repeat 1 106 0 4 972 272 165 37 25 chr12 50794734 50794815 -70462715 + A-rich Low_complexity Low_complexity 4 85 0 4 972 531 45 0 0 chr12 50795067 50795133 -70462397 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 972 1337 171 110 80 chr12 50795433 50795796 -70461734 + ORR1C2 LTR MaLR 9 382 -2 4 972 23 0 0 0 chr12 50796312 50796335 -70461195 + AT_rich Low_complexity Low_complexity 1 23 0 4 972 411 289 66 46 chr12 50796733 50797081 -70460449 + L1M5 LINE L1 5288 5642 -482 4 972 35651 39 1 1 chr12 50797115 50801795 -70455735 + L1Md_A LINE L1 816 5589 -297 4 972 8399 32 1 0 chr12 50801796 50802788 -70454742 + L1Md_A LINE L1 5591 6583 -2 4 972 35397 35 0 0 chr12 50802821 50808483 -70449047 + L1Md_T LINE L1 1 5589 -297 4 972 8978 5 0 0 chr12 50808483 50809477 -70448053 + L1Md_T LINE L1 5590 6583 -2 4 972 21 36 0 0 chr12 50809484 50809512 -70448018 + AT_rich Low_complexity Low_complexity 1 28 0 4 972 740 255 51 20 chr12 50809807 50810003 -70447527 + B3 SINE B2 15 216 0 4 972 1063 155 22 0 chr12 50810020 50810201 -70447329 + B2_Mm2 SINE B2 2 186 -9 4 972 482 256 73 0 chr12 50810213 50810350 -70447180 + B1_Mur3 SINE Alu 1 147 -2 4 972 811 263 63 0 chr12 50810351 50810541 -70446989 + B3 SINE B2 15 216 0 4 972 23 0 0 0 chr12 50810946 50810969 -70446561 + AT_rich Low_complexity Low_complexity 1 23 0 4 972 1954 224 130 34 chr12 50811060 50812042 -70445488 + Lx5 LINE L1 5966 7042 -8 4 972 1035 46 0 0 chr12 50812708 50812839 -70444691 + B1_Mus1 SINE Alu 9 139 -9 4 972 252 77 0 0 chr12 50812839 50812878 -70444652 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 972 183 42 0 0 chr12 50812921 50812945 -70444585 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 972 2910 195 21 2 chr12 50816142 50816706 -70440824 - Lx2B LINE L1 -5 6995 6421 4 972 616 274 172 11 chr12 50816908 50817280 -70440250 + L1M2 LINE L1 4511 4942 -1201 4 972 3467 161 45 5 chr12 50817374 50817544 -70439986 + L1_Mur2 LINE L1 4623 4796 -1081 4 972 387 0 0 0 chr12 50817544 50817587 -70439943 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 972 3467 161 45 5 chr12 50817587 50818036 -70439494 + L1_Mur2 LINE L1 4797 5260 -617 4 972 297 0 0 0 chr12 50818036 50818069 -70439461 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 972 3467 161 45 5 chr12 50818069 50818109 -70439421 + L1_Mur2 LINE L1 5261 5308 -569 4 972 3381 207 54 7 chr12 50818104 50818917 -70438613 + Lx4B LINE L1 6108 7052 -6 4 972 552 231 206 29 chr12 50818938 50819369 -70438161 + L1M2 LINE L1 5034 5530 -659 4 972 573 252 35 49 chr12 50819371 50819513 -70438017 + B1_Mur2 SINE Alu 10 149 0 4 972 441 326 99 20 chr12 50821726 50822036 -70435494 - MLT2C1 LTR ERVL -40 519 1 4 972 259 274 0 66 chr12 50822930 50823018 -70434512 + B4A SINE B4 1 82 -83 4 972 324 0 0 0 chr12 50823233 50823269 -70434261 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 972 248 316 26 26 chr12 50824156 50824234 -70433296 + ORR1D2 LTR MaLR 1 78 -292 4 972 709 150 25 0 chr12 50824234 50824354 -70433176 - Lx9 LINE L1 -215 7429 7307 4 972 2424 206 19 11 chr12 50824361 50824881 -70432649 - RLTR28 LTR ERVL 0 524 1 4 972 611 254 47 17 chr12 50824881 50825053 -70432477 - URR1B DNA MER1_type -12 213 37 4 972 430 227 0 0 chr12 50825080 50825168 -70432362 - Lx9 LINE L1 -344 7300 7213 4 972 2817 294 38 65 chr12 50825202 50825585 -70431945 + ORR1D2-int LTR MaLR 231 615 -755 4 972 270 0 0 0 chr12 50825585 50825615 -70431915 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 972 2817 294 38 65 chr12 50825615 50826239 -70431291 + ORR1D2-int LTR MaLR 616 1211 -159 4 972 467 227 65 70 chr12 50826557 50826742 -70430788 + RLTR23 LTR ERV1 247 430 0 4 972 727 250 44 0 chr12 50826742 50826902 -70430628 + ORR1D2-int LTR MaLR 1204 1370 0 4 972 1130 260 80 48 chr12 50826902 50827254 -70430276 + ORR1D2 LTR MaLR 1 363 -7 4 972 1346 56 0 11 chr12 50828298 50828479 -70429051 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 4 972 22 35 0 0 chr12 50828489 50828518 -70429012 + AT_rich Low_complexity Low_complexity 1 29 0 4 972 4204 205 45 17 chr12 50828521 50829215 -70428315 - Lx5 LINE L1 -11 7039 6325 4 972 2879 64 25 5 chr12 50829215 50829607 -70427923 + MTB LTR MaLR 1 400 0 4 972 4204 205 45 17 chr12 50829607 50829755 -70427775 - Lx5 LINE L1 -726 6324 6173 4 972 3061 184 117 8 chr12 50829757 50830679 -70426851 + Lx4B LINE L1 5155 6154 -904 4 972 21 71 0 0 chr12 50831430 50831472 -70426058 + AT_rich Low_complexity Low_complexity 1 42 0 4 972 1166 249 43 4 chr12 50831635 50831893 -70425637 - Lx5 LINE L1 -7 7043 6776 4 972 279 79 0 0 chr12 50831996 50832034 -70425496 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 972 250 321 36 0 chr12 50832656 50832740 -70424790 + ID_B1 SINE B4 70 156 -68 4 972 260 211 166 0 chr12 50832669 50832751 -70424779 + PB1D9 SINE Alu 5 99 -48 4 972 767 152 8 0 chr12 50832794 50832926 -70424604 + URR1B DNA MER1_type 86 218 -7 4 972 210 105 0 0 chr12 50833004 50833042 -70424488 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 4 972 1094 72 0 0 chr12 50833050 50833189 -70424341 - B1_Mus2 SINE Alu -6 141 3 4 972 22 0 0 0 chr12 50833201 50833223 -70424307 + AT_rich Low_complexity Low_complexity 1 22 0 4 972 1456 256 150 22 chr12 50834292 50834800 -70422730 - RMER15 LTR ERVL -2 573 1 4 972 23 0 0 0 chr12 50835706 50835729 -70421801 + AT_rich Low_complexity Low_complexity 1 23 0 4 972 674 254 38 5 chr12 50836238 50836424 -70421106 + B3A SINE B2 1 192 -6 4 972 244 265 65 50 chr12 50836436 50836575 -70420955 + L1MD3 LINE L1 7837 7977 -18 4 972 350 100 17 0 chr12 50837831 50837891 -70419639 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 972 356 275 120 33 chr12 50838413 50838584 -70418946 + MIR SINE MIR 24 200 -62 4 972 341 360 47 57 chr12 50839287 50839499 -70418031 + MLT1B LTR MaLR 102 311 -79 4 972 224 54 54 0 chr12 50839550 50839587 -70417943 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 972 22 35 0 0 chr12 50841320 50841349 -70416181 + AT_rich Low_complexity Low_complexity 1 29 0 4 972 1101 58 0 0 chr12 50843124 50843261 -70414269 + B1_Mm SINE Alu 2 138 -9 4 972 188 35 35 0 chr12 50843261 50843290 -70414240 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 972 26 30 0 0 chr12 50843347 50843380 -70414150 + AT_rich Low_complexity Low_complexity 1 33 0 4 972 32 26 0 0 chr12 50845072 50845111 -70412419 + AT_rich Low_complexity Low_complexity 1 39 0 4 972 3304 130 12 4 chr12 50845558 50846074 -70411456 + Lx LINE L1 6135 6654 0 4 972 1212 57 0 0 chr12 50846924 50847081 -70410449 + (TTTC)n Simple_repeat Simple_repeat 1 157 0 4 972 378 0 0 0 chr12 50847702 50847744 -70409786 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 972 279 114 0 0 chr12 50849775 50849819 -70407711 + (T)n Simple_repeat Simple_repeat 1 44 0 4 972 7377 79 20 20 chr12 50850380 50851410 -70406120 - Lx LINE L1 0 6654 5625 4 972 360 0 0 0 chr12 50851668 50851708 -70405822 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 972 377 320 87 46 chr12 50851742 50852074 -70405456 - L1MEc LINE L1 -3761 2578 2214 4 972 267 228 211 0 chr12 50852340 50852463 -70405067 - L1MEc LINE L1 -4847 1568 1420 4 972 21 0 0 0 chr12 50852513 50852534 -70404996 + AT_rich Low_complexity Low_complexity 1 21 0 4 972 29 0 0 0 chr12 50852905 50852934 -70404596 + AT_rich Low_complexity Low_complexity 1 29 0 4 972 307 322 37 42 chr12 50853081 50853272 -70404258 - RMER15 LTR ERVL -44 531 342 4 972 534 16 0 0 chr12 50853355 50853418 -70404112 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 972 215 254 17 17 chr12 50853601 50853661 -70403869 + (CATA)n Simple_repeat Simple_repeat 1 60 0 4 972 186 71 0 0 chr12 50855035 50855063 -70402467 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 4 121 5345 134 2 21 chr12 50855470 50856338 -70401192 - Lx2 LINE L1 0 6997 6146 4 973 308 130 0 0 chr12 50856338 50856392 -70401138 + Lx2 LINE L1 6107 6160 -837 4 973 569 294 51 27 chr12 50856476 50856524 -70401006 - B3A SINE B2 -10 206 154 4 973 297 0 0 0 chr12 50856524 50856557 -70400973 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 973 569 270 46 33 chr12 50856557 50856680 -70400850 - B3A SINE B2 -45 153 28 4 973 704 73 45 0 chr12 50857460 50857570 -70399960 - B1_Mus2 SINE Alu -9 138 24 4 973 252 0 0 0 chr12 50857806 50857834 -70399696 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 973 663 150 7 14 chr12 50858027 50858169 -70399361 + GA-rich Low_complexity Low_complexity 1 141 0 4 973 190 56 56 0 chr12 50858234 50858270 -70399260 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 973 27 29 0 0 chr12 50858974 50859008 -70398522 + AT_rich Low_complexity Low_complexity 1 34 0 4 973 24 0 0 0 chr12 50859042 50859066 -70398464 + AT_rich Low_complexity Low_complexity 1 24 0 4 973 352 224 20 0 chr12 50860302 50860400 -70397130 - Lx8 LINE L1 -11 7462 7363 4 973 21 36 0 0 chr12 50860986 50861014 -70396516 + AT_rich Low_complexity Low_complexity 1 28 0 4 973 23 0 0 0 chr12 50861709 50861732 -70395798 + AT_rich Low_complexity Low_complexity 1 23 0 4 973 781 301 83 25 chr12 50861841 50862103 -70395427 + B4A SINE B4 1 282 -10 4 973 396 59 0 0 chr12 50862103 50862154 -70395376 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 973 781 301 83 25 chr12 50862154 50862167 -70395363 + B4A SINE B4 283 292 0 4 973 267 278 69 0 chr12 50862316 50862388 -70395142 - ID2 SINE ID 0 83 7 4 973 271 215 25 12 chr12 50862570 50862650 -70394880 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 973 351 257 95 63 chr12 50862876 50863034 -70394496 + MER5A1 DNA MER1_type 1 163 -3 4 973 318 326 79 0 chr12 50863151 50863240 -70394290 - RSINE1 SINE B4 -68 97 2 4 973 186 43 0 0 chr12 50863375 50863398 -70394132 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 973 186 43 0 0 chr12 50864522 50864545 -70392985 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 973 545 268 14 0 chr12 50864736 50864878 -70392652 + B1_Mur1 SINE Alu 6 149 0 4 973 621 40 0 0 chr12 50865885 50865961 -70391569 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 4 973 453 36 0 0 chr12 50867200 50867255 -70390275 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 4 973 486 316 54 28 chr12 50867270 50867600 -70389930 - L1M2 LINE L1 -3077 3768 3424 4 973 295 257 105 45 chr12 50867779 50868094 -70389436 - L1M2 LINE L1 -3695 3150 2835 4 973 314 292 64 39 chr12 50868262 50868465 -70389065 - L1M2 LINE L1 -4188 2661 2454 4 973 398 313 33 116 chr12 50868614 50868735 -70388795 - Lx8 LINE L1 -6 7467 7361 4 973 258 32 0 0 chr12 50868735 50868766 -70388764 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 4 973 398 313 33 116 chr12 50868766 50868947 -70388583 - Lx8 LINE L1 -113 7360 7190 4 973 1277 149 9 11 chr12 50868949 50869171 -70388359 + RMER6B LTR ERVK 1 292 -169 5 973 354 45 0 0 chr12 50869171 50869215 -70388315 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 5 973 322 275 50 64 chr12 50869215 50869285 -70388245 + RMER6B LTR ERVK 293 365 -96 5 973 704 146 0 15 chr12 50869295 50869427 -70388103 + CT-rich Low_complexity Low_complexity 1 130 0 5 973 8204 103 10 32 chr12 50869427 50870712 -70386818 - Lx3A LINE L1 0 6981 5725 5 973 732 109 9 0 chr12 50870720 50870830 -70386700 + RMER6B LTR ERVK 351 461 0 5 973 3087 275 65 11 chr12 50870830 50871785 -70385745 - Lx8 LINE L1 -282 7191 6185 4 973 237 355 25 19 chr12 50872148 50872306 -70385224 - Lx9 LINE L1 -1626 6018 5860 5 973 2168 89 3 60 chr12 50872314 50872648 -70384882 + ORR1A2 LTR MaLR 5 319 -8 5 973 9939 155 44 13 chr12 50872652 50874556 -70382974 + ORR1A2-int LTR MaLR 1 1963 0 5 973 1942 108 3 54 chr12 50874556 50874869 -70382661 + ORR1A2 LTR MaLR 1 297 -30 5 973 1142 168 5 0 chr12 50875338 50875541 -70381989 - Lx2 LINE L1 -19 6978 6775 5 973 6625 138 27 4 chr12 50875541 50877028 -70380502 - Lx2 LINE L1 -354 6643 5123 5 973 14240 182 32 25 chr12 50877805 50878003 -70379527 - Lx2 LINE L1 -747 5136 5003 5 973 1081 103 7 0 chr12 50878003 50878149 -70379381 - B1_Mus1 SINE Alu 0 148 2 5 973 14240 182 32 25 chr12 50878149 50880922 -70376608 - Lx2 LINE L1 -881 5002 2146 5 973 254 118 176 0 chr12 50881049 50881100 -70376430 - Lx2 LINE L1 -14 6983 6924 5 973 264 59 0 0 chr12 50881190 50881224 -70376306 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 973 3765 169 36 3 chr12 50881932 50882602 -70374928 + RLTR17 LTR ERVK 1 692 0 5 973 8119 34 19 0 chr12 50882708 50883752 -70373778 - L1Md_F2 LINE L1 0 6582 5521 5 973 16628 96 4 8 chr12 50885781 50887111 -70370419 - L1_Mus1 LINE L1 -1 6566 5234 5 973 279 0 0 0 chr12 50887111 50887142 -70370388 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 973 16628 97 8 6 chr12 50887142 50887631 -70369899 - L1_Mus1 LINE L1 -650 5233 4749 5 973 2992 23 3 0 chr12 50887631 50887976 -70369554 + ORR1A0 LTR MaLR 1 346 0 5 973 24321 106 23 14 chr12 50887976 50889274 -70368256 - L1_Mus1 LINE L1 -1135 4748 3443 5 973 6252 42 0 3 chr12 50889274 50890035 -70367495 - L1Md_A LINE L1 0 6582 5824 5 973 24321 96 17 15 chr12 50890035 50893011 -70364519 - L1_Mus1 LINE L1 -2441 3442 442 5 973 304 381 58 35 chr12 50893242 50893468 -70364062 + ORR1E LTR MaLR 1 231 -128 5 973 284 355 36 29 chr12 50893480 50893619 -70363911 + ORR1E LTR MaLR 240 379 0 5 973 247 158 0 0 chr12 50893826 50893864 -70363666 - L1VL1 LINE L1 -6023 399 362 5 973 2760 173 80 62 chr12 50894101 50894717 -70362813 + RMER20B LTR ERVK 1 627 0 5 973 395 285 76 70 chr12 50895043 50895228 -70362302 - RMER15 LTR ERVL -43 532 347 5 973 415 348 37 0 chr12 50895450 50895614 -70361916 - LTR69 LTR ERVL 0 588 419 5 973 507 244 69 121 chr12 50896820 50896974 -70360556 - Lx7 LINE L1 -159 7537 7391 5 973 428 0 19 0 chr12 50896974 50897026 -70360504 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 973 507 244 69 121 chr12 50897026 50897160 -70360370 - Lx7 LINE L1 -306 7390 7266 5 973 1073 104 0 0 chr12 50897192 50897336 -70360194 + B1_Mus2 SINE Alu 3 146 -1 5 973 1881 208 28 35 chr12 50897397 50898179 -70359351 - L1_Mur3 LINE L1 -4233 1644 868 5 973 873 276 151 46 chr12 50898372 50898992 -70358538 - RMER13A LTR ERVK -125 735 14 5 973 1909 158 3 58 chr12 50899106 50899454 -70358076 - ORR1A4 LTR MaLR 0 329 1 5 973 2663 57 51 3 chr12 50899497 50899867 -70357663 - RLTR10 LTR ERVK -2 388 1 5 973 5372 247 36 120 chr12 50900066 50900819 -70356711 - L1_Rod LINE L1 -807 5040 4431 5 973 1013 116 0 20 chr12 50900819 50900969 -70356561 - B1_Mus1 SINE Alu 0 148 2 5 973 5372 247 36 120 chr12 50900969 50901014 -70356516 - L1_Rod LINE L1 -1417 4430 4387 5 973 759 86 8 0 chr12 50901014 50901131 -70356399 + L1_Mus2 LINE L1 6447 6564 -2 5 973 5372 247 36 120 chr12 50901131 50901369 -70356161 - L1_Rod LINE L1 -1461 4386 4209 5 973 4651 53 2 3 chr12 50901369 50901956 -70355574 - L1Md_F2 LINE L1 -3 6579 5994 5 973 5372 247 36 120 chr12 50901956 50902307 -70355223 - L1_Rod LINE L1 -1639 4208 3827 5 973 264 122 0 0 chr12 50902307 50902348 -70355182 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 973 5372 247 36 120 chr12 50902348 50903577 -70353953 - L1_Rod LINE L1 -2021 3826 2643 5 973 255 175 0 0 chr12 50904497 50904554 -70352976 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 973 1266 257 67 33 chr12 50904828 50905641 -70351889 + Lx6 LINE L1 5766 6887 -573 5 973 2130 181 70 32 chr12 50905881 50906321 -70351209 + RMER6B LTR ERVK 3 459 -2 5 973 1864 331 58 63 chr12 50906370 50906742 -70350788 - Lx9 LINE L1 -274 7370 7005 5 973 531 31 0 0 chr12 50906742 50906807 -70350723 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 973 1864 333 60 64 chr12 50906807 50907541 -70349989 - Lx9 LINE L1 -640 7004 6151 5 973 2062 141 28 0 chr12 50907541 50907861 -70349669 - ORR1A4 LTR MaLR 0 329 1 5 973 936 296 68 58 chr12 50907861 50908232 -70349298 - Lx9 LINE L1 -1323 6150 5728 5 973 588 258 30 75 chr12 50908229 50908787 -70348743 - Lx9 LINE L1 -402 5445 4936 5 973 247 126 7 8 chr12 50908853 50908908 -70348622 - PB1D10 SINE Alu -7 142 75 5 973 933 97 0 0 chr12 50908912 50909046 -70348484 + (TTC)n Simple_repeat Simple_repeat 3 136 0 5 973 1514 300 30 0 chr12 50909142 50909535 -70347995 - MTD LTR MaLR -14 405 1 5 973 322 346 107 62 chr12 50909680 50909867 -70347663 - MTEb LTR MaLR -27 352 152 5 973 959 188 98 10 chr12 50909867 50910071 -70347459 - URR1B DNA MER1_type -3 222 1 5 973 322 346 107 62 chr12 50910071 50910126 -70347404 - MTEb LTR MaLR -228 151 99 5 973 959 348 129 74 chr12 50910211 50911023 -70346507 - MTE-int LTR MaLR -44 1536 663 5 973 1680 71 0 9 chr12 50911023 50911250 -70346280 - L1_Mus1 LINE L1 0 6567 6343 5 973 959 348 129 74 chr12 50911250 50911579 -70345951 - MTE-int LTR MaLR -918 662 332 5 973 207 88 0 0 chr12 50911795 50911829 -70345701 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 973 322 281 54 69 chr12 50911982 50912112 -70345418 - MTEb LTR MaLR -251 128 1 5 973 24 67 0 0 chr12 50912451 50912496 -70345034 + AT_rich Low_complexity Low_complexity 1 45 0 5 973 21 36 0 0 chr12 50912615 50912643 -70344887 + AT_rich Low_complexity Low_complexity 1 28 0 5 973 180 0 0 0 chr12 50913893 50913913 -70343617 + (A)n Simple_repeat Simple_repeat 1 20 0 5 973 28 0 0 0 chr12 50914278 50914306 -70343224 + AT_rich Low_complexity Low_complexity 1 28 0 5 973 430 269 16 65 chr12 50916217 50916340 -70341190 - PB1D10 SINE Alu 0 117 1 5 973 6020 223 32 49 chr12 50917288 50919060 -70338470 + Lx6 LINE L1 5221 6970 -490 5 973 8180 40 4 2 chr12 50919060 50920052 -70337478 + L1Md_F2 LINE L1 5588 6581 -1 5 973 6020 249 38 69 chr12 50920052 50920295 -70337235 + Lx6 LINE L1 6971 7203 -257 5 973 1201 61 0 0 chr12 50920295 50920442 -70337088 - B1_Mus2 SINE Alu 0 147 1 5 973 6020 249 38 69 chr12 50920442 50920498 -70337032 + Lx6 LINE L1 7204 7255 -205 5 973 26 0 0 0 chr12 50920498 50920524 -70337006 + AT_rich Low_complexity Low_complexity 1 26 0 5 973 21 36 0 0 chr12 50920600 50920628 -70336902 + AT_rich Low_complexity Low_complexity 1 28 0 5 973 1772 63 4 0 chr12 50920640 50920877 -70336653 - L1Md_F2 LINE L1 -3 6579 6342 5 973 401 269 225 25 chr12 50921326 50921486 -70336044 + RMER15 LTR ERVL 336 527 -48 5 973 5721 168 49 38 chr12 50921646 50922777 -70334753 + Lx4B LINE L1 5899 7041 -17 5 973 450 0 0 0 chr12 50922777 50922827 -70334703 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 5 973 1068 80 0 0 chr12 50922971 50923108 -70334422 + B1_Mus2 SINE Alu 2 138 -9 5 973 200 59 29 0 chr12 50923108 50923142 -70334388 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 973 502 309 66 95 chr12 50923706 50923766 -70333764 + ORR1E LTR MaLR 44 103 -256 5 973 1367 196 155 19 chr12 50923766 50924089 -70333441 - ORR1B2 LTR MaLR 0 367 1 5 973 502 309 66 95 chr12 50924089 50924332 -70333198 + ORR1E LTR MaLR 104 338 -21 5 973 359 0 0 0 chr12 50924977 50925016 -70332514 + L1Md_F3 LINE L1 6358 6396 -186 5 973 533 49 0 12 chr12 50925021 50925104 -70332426 + L1Md_F3 LINE L1 6503 6584 0 5 973 252 0 0 0 chr12 50925713 50925741 -70331789 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 973 303 28 0 0 chr12 50925799 50925835 -70331695 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 973 720 43 0 0 chr12 50926530 50926622 -70330908 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 973 439 342 101 11 chr12 50926665 50926854 -70330676 - MT2A LTR ERVL -83 450 245 5 973 486 108 0 0 chr12 50926854 50926928 -70330602 + (CAT)n Simple_repeat Simple_repeat 2 75 0 5 973 758 21 0 21 chr12 50926932 50927029 -70330501 + (CAG)n Simple_repeat Simple_repeat 1 95 0 5 973 3602 53 25 19 chr12 50927830 50928312 -70329218 + L1Md_F2 LINE L1 6098 6582 0 5 973 592 59 0 23 chr12 50930748 50930835 -70326695 - B1_Mus2 SINE Alu 0 147 63 5 973 342 0 0 0 chr12 50930870 50930908 -70326622 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 5 973 242 381 0 19 chr12 50932092 50932199 -70325331 + MIRb SINE MIR 124 228 -40 5 973 1080 88 0 33 chr12 50932335 50932487 -70325043 + B1_Mus1 SINE Alu 2 148 0 5 973 24 0 0 0 chr12 50933083 50933107 -70324423 + AT_rich Low_complexity Low_complexity 1 24 0 5 973 333 0 0 0 chr12 50933731 50933768 -70323762 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 973 729 67 0 0 chr12 50933770 50933874 -70323656 + (GA)n Simple_repeat Simple_repeat 2 105 0 5 973 207 0 0 0 chr12 50933898 50933921 -70323609 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 5 973 520 308 16 88 chr12 50934330 50934579 -70322951 - MIR SINE MIR 0 262 32 5 973 267 236 0 0 chr12 50938663 50938735 -70318795 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 973 574 277 91 34 chr12 50939350 50939559 -70317971 + Lx8 LINE L1 7105 7325 -148 5 973 315 242 0 0 chr12 50939785 50939851 -70317679 + ID4 SINE ID 16 81 -2 5 973 249 286 71 61 chr12 50940697 50940909 -70316621 - L1M5 LINE L1 -294 5870 5657 5 973 698 237 45 20 chr12 50940970 50941155 -70316375 + Lx4B LINE L1 6849 7039 -19 5 973 186 43 0 0 chr12 50941155 50941178 -70316352 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 5 973 698 237 45 20 chr12 50941178 50941194 -70316336 + Lx4B LINE L1 7040 7055 -3 5 973 186 43 0 0 chr12 50941516 50941539 -70315991 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 5 973 1475 266 65 18 chr12 50944044 50944431 -70313099 + MTD LTR MaLR 3 407 -12 5 973 985 175 0 24 chr12 50944518 50944688 -70312842 - Lx2 LINE L1 -325 6672 6507 5 973 1175 167 69 57 chr12 50944672 50944919 -70312611 + Lx2 LINE L1 6678 6927 -70 5 973 368 395 9 4 chr12 50944886 50945112 -70312418 + Lx8 LINE L1 7003 7229 -244 5 973 630 245 114 117 chr12 50945992 50946361 -70311169 + ORR1D2 LTR MaLR 1 368 -2 5 973 6491 40 1 3 chr12 50947119 50947903 -70309627 - L1Md_F2 LINE L1 -2 6580 5798 5 973 1048 280 43 106 chr12 50950736 50951131 -70306399 - MTE2b LTR MaLR 0 379 10 5 973 412 195 0 0 chr12 50951435 50951517 -70306013 + Lx3_Mus LINE L1 3 84 -6900 5 973 6172 132 22 2 chr12 50951523 50951985 -70305545 + L1_Mm LINE L1 2659 3141 -2742 5 973 243 0 0 0 chr12 50951985 50952012 -70305518 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 973 6172 132 22 2 chr12 50952012 50952561 -70304969 + L1_Mm LINE L1 3142 3690 -2193 5 973 12864 98 16 9 chr12 50952559 50954550 -70302980 + Lx3_Mus LINE L1 1355 3358 -2528 5 973 31225 73 1 27 chr12 50954547 50955316 -70302214 + L1_Mus1 LINE L1 538 1303 -5335 5 973 1002 130 0 0 chr12 50955316 50955462 -70302068 + B1_Mus1 SINE Alu 1 146 -2 5 973 31225 107 7 7 chr12 50955462 50960730 -70296800 + L1_Mus1 LINE L1 1304 6566 -1 5 973 9060 114 12 31 chr12 50960768 50963161 -70294369 + Lx3_Mus LINE L1 4685 7009 0 5 973 3985 40 8 0 chr12 50963175 50963707 -70293823 + L1Md_F3 LINE L1 6102 6584 0 5 973 3394 204 37 31 chr12 50963925 50964627 -70292903 - Lx5 LINE L1 -3 7047 6342 6 973 858 295 179 12 chr12 50965311 50966002 -70291528 + L1MA6 LINE L1 5413 6230 -61 6 973 1925 72 0 125 chr12 50966143 50966417 -70291113 + L1_Mus2 LINE L1 6286 6523 -43 6 973 836 89 96 0 chr12 50966417 50966552 -70290978 - B1_Mus1 SINE Alu 0 148 1 6 973 1925 72 0 125 chr12 50966552 50966596 -70290934 + L1_Mus2 LINE L1 6524 6564 -2 6 973 510 165 22 11 chr12 50968829 50968921 -70288609 + MTC LTR MaLR 11 103 -318 6 973 596 14 14 0 chr12 50968925 50968998 -70288532 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 973 369 194 48 106 chr12 50969035 50969139 -70288391 - Lx4B LINE L1 -7 7051 6954 6 973 563 146 0 0 chr12 50969139 50969228 -70288302 + MTC LTR MaLR 121 209 -212 6 973 2559 121 23 0 chr12 50969233 50969631 -70287899 - Lx4A LINE L1 -1063 5995 5589 6 973 1686 144 11 7 chr12 50969657 50969929 -70287601 + Lx4A LINE L1 6105 6377 -681 6 973 1240 101 0 0 chr12 50969936 50970105 -70287425 - L1_Mus2 LINE L1 -247 6319 6151 6 973 4906 155 50 12 chr12 50970096 50971456 -70286074 + L1_Mus4 LINE L1 5214 6629 -7 6 973 252 0 0 0 chr12 50971461 50971489 -70286041 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 973 854 45 0 9 chr12 50971500 50971612 -70285918 + (GGGAA)n Simple_repeat Simple_repeat 3 113 0 6 973 639 0 0 0 chr12 50971617 50971688 -70285842 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 6 973 3721 143 74 21 chr12 50971688 50972338 -70285192 + Lx4A LINE L1 6374 7057 -1 6 973 1020 168 110 5 chr12 50972371 50972580 -70284950 + MTC LTR MaLR 191 421 0 6 973 337 70 0 0 chr12 50973473 50973516 -70284014 - HAL1-3A_ME LINE L1 -841 2017 1975 6 973 576 254 0 0 chr12 50973518 50973808 -70283722 + (TG)n Simple_repeat Simple_repeat 1 290 0 6 973 3084 48 3 0 chr12 50974844 50975222 -70282308 + L1_Mus1 LINE L1 6189 6567 0 6 973 944 135 36 30 chr12 50975775 50975943 -70281587 + MurERV4_19-int LTR ERVK 2558 2726 -3054 6 973 1881 203 90 110 chr12 50976565 50977267 -70280263 + RMER6C LTR ERVK 1 688 -2 6 973 6004 187 76 77 chr12 50977448 50978899 -70278631 + L1_Mur2 LINE L1 882 2419 -3458 6 973 1062 92 0 21 chr12 50978899 50979044 -70278486 + B1_Mus2 SINE Alu 5 146 -1 6 973 6004 187 30 93 chr12 50979044 50979536 -70277994 + L1_Mur2 LINE L1 2420 2791 -3086 6 973 5969 148 43 30 chr12 50979534 50980708 -70276822 + L1_Mur2 LINE L1 3933 5122 -755 6 973 4243 105 28 8 chr12 50981123 50981756 -70275774 + Lx LINE L1 6009 6654 0 6 973 39 60 0 0 chr12 50982033 50982100 -70275430 + AT_rich Low_complexity Low_complexity 1 67 0 6 973 299 146 60 18 chr12 50982103 50982270 -70275260 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 6 973 45 19 0 0 chr12 50982270 50982322 -70275208 + AT_rich Low_complexity Low_complexity 1 52 0 6 973 22 35 0 0 chr12 50982425 50982454 -70275076 + AT_rich Low_complexity Low_complexity 1 29 0 6 973 22 35 0 0 chr12 50983275 50983304 -70274226 + AT_rich Low_complexity Low_complexity 1 29 0 6 973 463 223 115 10 chr12 50983465 50983569 -70273961 + RSINE1 SINE B4 31 145 -20 6 973 189 0 0 0 chr12 50983665 50983686 -70273844 + (T)n Simple_repeat Simple_repeat 1 21 0 6 973 2125 290 75 72 chr12 50983752 50984929 -70272601 - ORR1D-int LTR MaLR -120 1389 247 6 974 217 169 23 35 chr12 50990308 50990394 -70267136 + GA-rich Low_complexity Low_complexity 2 86 0 6 974 479 299 81 27 chr12 50990496 50990644 -70266886 - RSINE1 SINE B4 -4 161 6 6 974 1426 286 37 8 chr12 50991110 50991463 -70266067 - ORR1D2 LTR MaLR -7 363 1 6 974 897 337 9 13 chr12 50992774 50993090 -70264440 - Lx8 LINE L1 -208 7265 6951 6 974 27 0 0 0 chr12 50993090 50993117 -70264413 + AT_rich Low_complexity Low_complexity 1 27 0 6 974 738 276 86 52 chr12 50993251 50993798 -70263732 + Lx8 LINE L1 5366 5914 -1782 6 974 731 312 125 0 chr12 50993976 50994287 -70263243 + Lx8 LINE L1 6263 6612 -861 6 974 411 270 44 9 chr12 50994442 50994595 -70262935 + Lx2B LINE L1 5674 5850 -1150 6 974 377 254 252 8 chr12 50995892 50996019 -70261511 + Lx6 LINE L1 7277 7434 -26 6 974 789 160 115 0 chr12 50996044 50996200 -70261330 + RLTR14 LTR ERV1 66 239 -143 6 974 345 231 195 21 chr12 50996397 50996587 -70260943 + Charlie5 DNA MER1_type 2364 2586 -38 6 974 4876 83 33 1 chr12 50996716 50997389 -70260141 + L1_Mus3 LINE L1 5944 6637 -1 6 974 1053 217 66 35 chr12 50997498 50997785 -70259745 + Lx9 LINE L1 6924 7219 -425 6 974 1601 91 4 4 chr12 50997785 50998018 -70259512 + L1_Mus4 LINE L1 6403 6635 -1 6 974 260 301 175 9 chr12 50998532 50998646 -70258884 + MLT1J LTR MaLR 135 267 -245 6 974 27 49 0 0 chr12 50999886 50999927 -70257603 + AT_rich Low_complexity Low_complexity 1 41 0 6 974 253 300 86 12 chr12 51000002 51000083 -70257447 - PB1D10 SINE Alu -18 99 13 1 974 25 31 0 0 chr12 51000270 51000302 -70257228 + AT_rich Low_complexity Low_complexity 1 32 0 2 974 182 128 0 25 chr12 51000771 51000811 -70256719 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 974 606 295 76 17 chr12 51000851 51001089 -70256441 + MER2 DNA MER2_type 30 281 -64 4 974 216 170 0 0 chr12 51001089 51001142 -70256388 + A-rich Low_complexity Low_complexity 1 53 0 5 974 261 0 0 0 chr12 51001954 51001983 -70255547 + (T)n Simple_repeat Simple_repeat 1 29 0 6 974 455 288 78 11 chr12 51002909 51003088 -70254442 - B3 SINE B2 -25 191 1 7 974 24 0 0 0 chr12 51004025 51004049 -70253481 + AT_rich Low_complexity Low_complexity 1 24 0 8 974 405 0 0 0 chr12 51004401 51004446 -70253084 + (TTA)n Simple_repeat Simple_repeat 1 45 0 9 974 36 23 0 0 chr12 51005265 51005308 -70252222 + AT_rich Low_complexity Low_complexity 1 43 0 1 974 3054 40 0 10 chr12 51005450 51005834 -70251696 + L1Md_T LINE L1 6203 6582 0 1 974 397 351 55 47 chr12 51007179 51007415 -70250115 + MIRb SINE MIR 17 254 -14 1 974 972 283 105 21 chr12 51007710 51008099 -70249431 + MER74C LTR ERVL 1 422 -38 1 974 316 302 10 10 chr12 51008147 51008164 -70249366 - BC1_Mm scRNA scRNA -54 98 2 1 974 419 225 12 0 chr12 51008164 51008244 -70249286 - ID SINE ID -142 82 2 1 974 22 0 0 0 chr12 51009357 51009379 -70248151 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 2419 185 11 9 chr12 51009389 51009871 -70247659 - Lx8 LINE L1 -1558 5915 5429 1 974 4330 152 10 12 chr12 51009836 51010568 -70246962 + Lx4B LINE L1 5877 6606 -452 1 974 2192 64 30 20 chr12 51010569 51010873 -70246657 + IAPLTR2b LTR ERVK 1 307 -20 1 974 306 20 19 38 chr12 51010905 51010958 -70246572 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 2 974 396 0 0 0 chr12 51011419 51011463 -70246067 + (A)n Simple_repeat Simple_repeat 1 44 0 2 974 26 0 0 0 chr12 51011825 51011851 -70245679 + AT_rich Low_complexity Low_complexity 1 26 0 2 974 1171 62 0 0 chr12 51012541 51012686 -70244844 - B1_Mus1 SINE Alu 0 148 4 2 974 521 328 100 22 chr12 51012944 51013215 -70244315 - B4 SINE B4 0 292 1 2 974 278 106 0 21 chr12 51013533 51013581 -70243949 + (TATG)n Simple_repeat Simple_repeat 4 50 0 2 974 674 391 14 18 chr12 51013591 51013872 -70243658 - B4A SINE B4 0 292 13 2 974 298 356 46 0 chr12 51014278 51014365 -70243165 + PB1D9 SINE Alu 3 93 -27 2 974 1287 75 0 5 chr12 51014747 51014963 -70242567 + (GAAAA)n Simple_repeat Simple_repeat 1 215 0 2 974 943 150 0 22 chr12 51015141 51015325 -70242205 + CT-rich Low_complexity Low_complexity 1 180 0 2 974 366 211 9 18 chr12 51015336 51015352 -70242178 + polypyrimidine Low_complexity Low_complexity 97 112 0 3 974 1395 39 0 0 chr12 51015352 51015530 -70242000 + (TTC)n Simple_repeat Simple_repeat 2 179 0 3 974 366 211 9 18 chr12 51015530 51015624 -70241906 + CT-rich Low_complexity Low_complexity 3 96 0 3 974 4559 102 13 8 chr12 51015967 51016638 -70240892 + Lx LINE L1 5980 6654 0 3 974 1158 237 93 25 chr12 51019584 51019939 -70237591 + MTD LTR MaLR 18 396 -23 3 974 1997 328 46 16 chr12 51020195 51021079 -70236451 - Lx8 LINE L1 -98 7375 6465 3 974 458 79 13 0 chr12 51021788 51021864 -70235666 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 974 237 132 0 0 chr12 51022061 51022099 -70235431 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 3 974 604 349 126 58 chr12 51022419 51022903 -70234627 + MLT1E2 LTR MaLR 92 608 -19 3 974 7305 117 12 16 chr12 51023313 51024470 -70233060 + Lx3_Mus LINE L1 4751 5903 -1106 3 974 3259 152 24 27 chr12 51024470 51025098 -70232432 + Lx3C LINE L1 6339 6964 -12 4 974 1704 173 30 15 chr12 51025098 51025114 -70232416 + Lx3_Mus LINE L1 5904 5919 -1090 3 974 543 312 30 54 chr12 51025949 51026152 -70231378 - B3A SINE B2 0 198 1 4 974 561 274 58 34 chr12 51026157 51026448 -70231082 - L1MC3 LINE L1 -725 7060 6763 4 974 316 309 168 7 chr12 51026615 51026752 -70230778 - L1MC3 LINE L1 -1178 6607 6449 4 974 236 341 22 7 chr12 51027024 51027163 -70230367 - L1MC3 LINE L1 -1410 6375 6235 4 974 24 77 0 0 chr12 51028102 51028154 -70229376 + AT_rich Low_complexity Low_complexity 1 52 0 4 974 341 323 114 48 chr12 51028514 51028787 -70228743 + B4A SINE B4 2 292 0 4 974 249 128 0 0 chr12 51028792 51028839 -70228691 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 974 27 73 0 0 chr12 51029516 51029571 -70227959 + AT_rich Low_complexity Low_complexity 1 55 0 4 974 1314 187 74 31 chr12 51031727 51032052 -70225478 + RMER1B Other Other 723 1061 -5 4 974 810 204 22 72 chr12 51032052 51032232 -70225298 + MTC LTR MaLR 194 364 -57 4 974 302 149 22 22 chr12 51032507 51032596 -70224934 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 974 255 173 53 0 chr12 51032627 51032702 -70224828 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 974 2040 135 25 0 chr12 51033348 51033667 -70223863 + ORR1A1 LTR MaLR 19 345 -1 5 974 249 277 12 24 chr12 51033977 51034062 -70223468 + GA-rich Low_complexity Low_complexity 3 86 0 5 974 1245 226 194 37 chr12 51034084 51034434 -70223096 - MTD LTR MaLR -14 405 1 5 974 375 225 12 12 chr12 51034434 51034515 -70223015 + GA-rich Low_complexity Low_complexity 5 85 0 5 974 778 125 14 0 chr12 51034515 51034659 -70222871 + (GGAA)n Simple_repeat Simple_repeat 1 146 0 5 974 8310 47 0 1 chr12 51034754 51036231 -70221299 - L1Md_F3 LINE L1 -14 6570 5096 5 974 1132 37 0 0 chr12 51036232 51036367 -70221163 + L1Md_F3 LINE L1 4883 5017 -866 5 974 276 148 0 0 chr12 51036431 51036492 -70221038 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 974 359 243 79 26 chr12 51036493 51036607 -70220923 - L1MCa LINE L1 -4549 1959 1840 5 974 513 0 0 0 chr12 51037384 51037441 -70220089 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 974 435 19 0 0 chr12 51038615 51038667 -70218863 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 974 259 304 76 0 chr12 51038682 51038761 -70218769 - RSINE1 SINE B4 -14 151 67 6 974 531 302 22 8 chr12 51039068 51039312 -70218218 + L1_Rod LINE L1 2275 2523 -3357 6 974 189 0 0 0 chr12 51039868 51039889 -70217641 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 974 243 0 0 0 chr12 51039889 51039915 -70217615 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 974 396 0 0 0 chr12 51039971 51040015 -70217515 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 974 599 379 65 14 chr12 51040447 51040723 -70216807 - B4 SINE B4 -2 290 1 6 974 364 305 175 44 chr12 51040963 51041323 -70216207 - Tigger15a DNA TcMar -288 427 21 6 974 217 219 24 24 chr12 51042242 51042326 -70215204 + A-rich Low_complexity Low_complexity 3 86 0 6 974 319 310 8 49 chr12 51042920 51043020 -70214510 + PB1D10 SINE Alu 1 95 -22 6 974 615 14 0 0 chr12 51043020 51043092 -70214438 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 974 294 29 0 0 chr12 51043092 51043126 -70214404 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 974 319 310 8 49 chr12 51043126 51043146 -70214384 + PB1D10 SINE Alu 96 115 -2 6 974 183 275 132 63 chr12 51043629 51043819 -70213711 + MIRc SINE MIR 65 267 -1 7 974 204 308 0 30 chr12 51044073 51044140 -70213390 + GA-rich Low_complexity Low_complexity 1 65 0 7 974 184 203 40 68 chr12 51047563 51047637 -70209893 - L3b LINE CR1 -159 323 252 7 974 198 0 0 0 chr12 51048312 51048334 -70209196 + (A)n Simple_repeat Simple_repeat 1 22 0 7 974 26 50 0 0 chr12 51048412 51048452 -70209078 + AT_rich Low_complexity Low_complexity 1 40 0 7 974 28 79 0 0 chr12 51048653 51048716 -70208814 + AT_rich Low_complexity Low_complexity 1 63 0 7 974 274 309 39 67 chr12 51051904 51052008 -70205522 + PB1D10 SINE Alu 9 109 -8 7 974 443 268 36 0 chr12 51053235 51053347 -70204183 - PB1D10 SINE Alu -1 116 1 7 974 560 53 0 13 chr12 51056756 51056833 -70200697 + (TTCC)n Simple_repeat Simple_repeat 2 77 0 7 974 344 296 63 38 chr12 51056866 51057024 -70200506 - B3A SINE B2 -36 162 1 7 974 275 109 0 45 chr12 51057051 51057118 -70200412 + T-rich Low_complexity Low_complexity 1 64 0 8 974 190 219 123 0 chr12 51057282 51057355 -70200175 - MIRb SINE MIR 0 268 187 8 974 704 243 105 5 chr12 51057400 51057431 -70200099 - B3 SINE B2 -7 209 180 8 974 321 26 0 0 chr12 51057431 51057469 -70200061 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 974 704 243 105 5 chr12 51057469 51057627 -70199903 - B3 SINE B2 -37 179 3 8 974 21 0 0 0 chr12 51057629 51057650 -70199880 + AT_rich Low_complexity Low_complexity 1 21 0 8 974 215 266 78 0 chr12 51057754 51057818 -70199712 - B1F2 SINE Alu -44 105 37 8 974 950 294 48 30 chr12 51058090 51058423 -70199107 - Lx8 LINE L1 -2 7471 7133 8 974 729 232 62 51 chr12 51059505 51059552 -70197978 + B3A SINE B2 1 45 -153 8 974 4954 49 0 3 chr12 51059552 51060168 -70197362 - L1Md_F2 LINE L1 -12 6570 5957 8 974 729 232 62 51 chr12 51060168 51060315 -70197215 + B3A SINE B2 46 197 -1 8 974 527 148 22 7 chr12 51060647 51060783 -70196747 + (TA)n Simple_repeat Simple_repeat 2 139 0 8 974 218 194 38 89 chr12 51060793 51060872 -70196658 + RSINE1 SINE B4 91 165 0 9 974 509 321 32 21 chr12 51060909 51061097 -70196433 + Lx8 LINE L1 7152 7341 -132 9 974 182 164 0 18 chr12 51061298 51061354 -70196176 + A-rich Low_complexity Low_complexity 1 55 0 9 974 1138 82 0 0 chr12 51061641 51061788 -70195742 + B1_Mm SINE Alu 1 147 0 9 974 21 36 0 0 chr12 51067703 51067731 -70189799 + AT_rich Low_complexity Low_complexity 1 28 0 9 974 321 333 11 0 chr12 51069517 51069604 -70187926 - PB1D10 SINE Alu -26 91 4 9 974 406 188 69 50 chr12 51069953 51070054 -70187476 + URR1B DNA MER1_type 122 224 -1 9 974 210 171 0 0 chr12 51070078 51070113 -70187417 + T-rich Low_complexity Low_complexity 1 35 0 9 974 369 93 0 0 chr12 51070190 51070244 -70187286 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 974 24 32 0 0 chr12 51071191 51071222 -70186308 + AT_rich Low_complexity Low_complexity 1 31 0 9 974 787 69 49 12 chr12 51071237 51071399 -70186131 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 1 974 572 327 57 5 chr12 51071736 51071948 -70185582 - B4A SINE B4 -5 287 65 1 974 1768 206 28 11 chr12 51071941 51072299 -70185231 - MTC LTR MaLR -53 368 5 1 974 484 269 151 6 chr12 51072992 51073164 -70184366 - B3 SINE B2 -19 197 1 1 974 330 91 0 0 chr12 51073170 51073225 -70184305 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 974 1193 41 0 7 chr12 51073231 51073377 -70184153 - B1_Mus1 SINE Alu -1 147 3 1 974 25 31 0 0 chr12 51073614 51073646 -70183884 + AT_rich Low_complexity Low_complexity 1 32 0 1 974 1329 73 0 0 chr12 51076291 51076469 -70181061 + (TTTTC)n Simple_repeat Simple_repeat 1 178 0 1 974 226 353 180 11 chr12 51077247 51077479 -70180051 + L2a LINE L2 3079 3406 -20 1 974 1155 35 0 0 chr12 51078722 51078867 -70178663 + L1Md_F3 LINE L1 6409 6553 -31 1 974 218 32 32 0 chr12 51078867 51078898 -70178632 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 974 259 45 0 43 chr12 51078905 51078952 -70178578 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 974 216 23 0 104 chr12 51079049 51079097 -70178433 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 1 974 782 172 218 10 chr12 51079102 51079308 -70178222 + Lx3C LINE L1 6726 6974 -2 1 974 4299 76 5 12 chr12 51079369 51079958 -70177572 - L1_Mus3 LINE L1 -4 6634 6050 1 974 185 182 0 18 chr12 51079997 51080053 -70177477 + T-rich Low_complexity Low_complexity 1 55 0 1 974 570 95 21 21 chr12 51080172 51080269 -70177261 - Lx3C LINE L1 -111 6865 6769 1 974 282 56 0 0 chr12 51080269 51080305 -70177225 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 974 440 359 8 0 chr12 51080335 51080452 -70177078 - RSINE1 SINE B4 -2 163 46 1 974 27 0 0 0 chr12 51080543 51080570 -70176960 + AT_rich Low_complexity Low_complexity 1 27 0 1 974 235 294 49 25 chr12 51080829 51080951 -70176579 - L1M5 LINE L1 -1481 4665 4541 1 974 314 264 77 12 chr12 51081080 51081249 -70176281 - L1MC LINE L1 -1821 4325 4146 1 974 329 315 83 17 chr12 51081515 51081796 -70175734 - Lx7 LINE L1 -526 5774 5487 1 974 1215 233 7 7 chr12 51081800 51082077 -70175453 - Lx6 LINE L1 -4 7456 7180 1 974 7129 187 38 47 chr12 51082083 51083700 -70173830 + L1_Mur3 LINE L1 4177 5778 -102 1 974 276 213 0 0 chr12 51083690 51083758 -70173772 - Lx7 LINE L1 -807 5496 5395 1 974 1009 262 100 30 chr12 51085040 51085371 -70172159 - ORR1E LTR MaLR -2 357 4 1 974 423 0 0 0 chr12 51085458 51085505 -70172025 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 974 477 0 0 0 chr12 51085505 51085557 -70171973 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 974 191 36 36 0 chr12 51085838 51085866 -70171664 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 974 4880 161 50 18 chr12 51085937 51086848 -70170682 + Lx2 LINE L1 6046 6986 -11 1 974 282 83 0 0 chr12 51086941 51086977 -70170553 + U2 snRNA snRNA 1 36 -152 1 974 6294 35 4 8 chr12 51087023 51087795 -70169735 + L1Md_F3 LINE L1 5812 6580 -4 1 974 23 78 0 0 chr12 51087795 51087846 -70169684 + AT_rich Low_complexity Low_complexity 1 51 0 1 974 607 338 13 1 chr12 51088612 51088792 -70168738 - B3A SINE B2 -33 183 2 1 974 21 36 0 0 chr12 51088883 51088911 -70168619 + AT_rich Low_complexity Low_complexity 1 28 0 1 974 7057 145 19 32 chr12 51088924 51090215 -70167315 - Lx3B LINE L1 -1 6972 5690 1 974 1481 70 11 126 chr12 51090496 51090757 -70166773 - L1_Mus2 LINE L1 -4 6562 6332 1 974 282 275 0 12 chr12 51095458 51095539 -70161991 + MER53 DNA hAT 27 106 -87 1 974 207 0 0 0 chr12 51095851 51095874 -70161656 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 974 222 184 0 0 chr12 51097873 51097911 -70159619 + CT-rich Low_complexity Low_complexity 3 40 0 1 974 22 0 0 0 chr12 51097939 51097961 -70159569 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 298 286 69 31 chr12 51098894 51099024 -70158506 + L1MA6 LINE L1 5752 5886 -414 1 974 459 0 0 0 chr12 51099809 51099860 -70157670 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 974 676 296 39 5 chr12 51100130 51100334 -70157196 - B3 SINE B2 0 216 6 1 974 316 279 71 52 chr12 51100520 51100675 -70156855 - L1MA5 LINE L1 -285 6015 5858 1 974 1997 201 164 0 chr12 51101551 51102052 -70155478 + Lx3C LINE L1 5869 6451 -525 1 974 1345 238 89 16 chr12 51102255 51102270 -70155260 + MTD LTR MaLR 1 15 -404 1 974 378 42 0 0 chr12 51102270 51102318 -70155212 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 1 974 1345 226 98 16 chr12 51102318 51102685 -70154845 + MTD LTR MaLR 16 398 -21 1 974 780 278 69 31 chr12 51102687 51102947 -70154583 + MTD-int LTR MaLR 1 270 -988 1 974 921 328 58 8 chr12 51102949 51103342 -70154188 + Lx9 LINE L1 7059 7471 -173 1 974 259 317 148 0 chr12 51103512 51103613 -70153917 + MTE2b LTR MaLR 212 327 -52 1 974 944 294 93 48 chr12 51103793 51104281 -70153249 + MTD-int LTR MaLR 385 994 -264 1 974 270 81 0 0 chr12 51104281 51104318 -70153212 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 974 475 155 93 0 chr12 51104457 51104554 -70152976 + MTD LTR MaLR 1 106 -315 1 974 1271 73 8 0 chr12 51104562 51104822 -70152708 + (TTTC)n Simple_repeat Simple_repeat 1 262 0 1 974 1275 64 64 0 chr12 51104832 51105004 -70152526 - L1_Mus1 LINE L1 0 6567 6385 1 974 348 303 0 1 chr12 51105015 51105114 -70152416 + MTD LTR MaLR 133 227 -169 1 974 1131 69 7 0 chr12 51105115 51105260 -70152270 + B1_Mm SINE Alu 1 146 -1 1 974 248 53 0 26 chr12 51105265 51105304 -70152226 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 974 3258 247 71 15 chr12 51105309 51106167 -70151363 + Lx6 LINE L1 5674 6579 -881 1 974 394 300 173 32 chr12 51106271 51106763 -70150767 + L1MC3 LINE L1 5999 6604 -1438 1 974 477 0 0 0 chr12 51106972 51107025 -70150505 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 974 328 294 48 30 chr12 51107247 51107415 -70150115 + L1MC3 LINE L1 7267 7437 -348 1 974 7356 73 19 5 chr12 51107411 51108509 -70149021 + L1_Mus2 LINE L1 5451 6566 0 1 974 313 226 102 51 chr12 51108543 51108583 -70148947 + L1MC3 LINE L1 7661 7698 -87 1 974 486 0 0 0 chr12 51108583 51108637 -70148893 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 974 313 226 102 51 chr12 51108637 51108694 -70148836 + L1MC3 LINE L1 7699 7763 -22 1 974 1418 215 93 5 chr12 51109314 51109692 -70147838 - Lx9 LINE L1 -8 7636 7226 1 974 22 0 0 0 chr12 51110198 51110220 -70147310 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 642 361 37 51 chr12 51110267 51110754 -70146776 + Lx8 LINE L1 6024 6503 -970 1 974 480 262 42 7 chr12 51110833 51110975 -70146555 - MTD LTR MaLR -260 159 13 1 974 567 299 131 17 chr12 51110982 51111404 -70146126 + Lx8 LINE L1 6872 7341 -132 1 974 713 52 103 0 chr12 51111405 51111502 -70146028 - L1Md_F2 LINE L1 -443 6139 6033 1 974 349 19 111 0 chr12 51111503 51111557 -70145973 + L1Md_F2 LINE L1 6522 6581 -1 1 974 549 323 26 10 chr12 51111810 51112004 -70145526 + B3A SINE B2 1 197 -1 1 974 325 152 48 0 chr12 51113358 51113463 -70144067 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 1 974 618 133 48 82 chr12 51114185 51114332 -70143198 - Lx3B LINE L1 -4 6969 6828 1 974 635 114 0 0 chr12 51114325 51114413 -70143117 + Lx3A LINE L1 5674 5761 -1220 1 974 22 0 0 0 chr12 51114432 51114454 -70143076 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 795 330 90 31 chr12 51114482 51114926 -70142604 - Lx8 LINE L1 -61 7412 6943 1 974 378 0 0 0 chr12 51115119 51115161 -70142369 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 1 974 316 312 54 0 chr12 51115166 51115278 -70142252 + L1MC3 LINE L1 6526 6643 -1142 1 974 2114 224 7 2 chr12 51115479 51115887 -70141643 - MTC LTR MaLR -11 410 1 1 974 253 212 0 0 chr12 51116489 51116555 -70140975 - L1ME3B LINE L1 -241 5999 5934 1 121 9691 45 3 0 chr12 51116556 51118463 -70139067 - L1Md_F2 LINE L1 -1 6581 4669 1 975 24 0 0 0 chr12 51120337 51120361 -70137169 + AT_rich Low_complexity Low_complexity 1 24 0 1 975 1125 234 124 44 chr12 51120387 51120775 -70136755 + MTD LTR MaLR 1 419 0 1 975 671 352 70 26 chr12 51120775 51121163 -70136367 + Lx8 LINE L1 6831 7235 -238 1 975 849 224 264 34 chr12 51121254 51121550 -70135980 + Lx4A LINE L1 6695 7058 0 1 975 234 128 0 0 chr12 51121550 51121589 -70135941 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 975 586 298 102 106 chr12 51121796 51122044 -70135486 + ORR1D2 LTR MaLR 95 364 -6 1 975 288 0 0 0 chr12 51122411 51122443 -70135087 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 975 1934 116 79 45 chr12 51122498 51122851 -70134679 - Lx3B LINE L1 -16 6957 6593 1 975 3546 10 2 0 chr12 51122851 51123246 -70134284 - MTA_Mm LTR MaLR 0 396 1 1 975 4503 89 22 21 chr12 51123246 51124249 -70133281 - MTA_Mm-int LTR MaLR 0 1098 1 1 975 3507 15 2 0 chr12 51124249 51124644 -70132886 - MTA_Mm LTR MaLR 0 396 1 1 975 1703 101 16 24 chr12 51124644 51124898 -70132632 - Lx3B LINE L1 -376 6597 6346 1 975 398 134 15 0 chr12 51124857 51124924 -70132606 + Lx3C LINE L1 6322 6389 -587 1 975 23 54 0 0 chr12 51125042 51125079 -70132451 + AT_rich Low_complexity Low_complexity 1 37 0 1 975 2243 108 12 3 chr12 51125297 51125632 -70131898 + ORR1A1 LTR MaLR 1 338 -8 1 975 336 48 0 0 chr12 51125675 51125717 -70131813 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 975 1976 201 105 0 chr12 51125964 51126403 -70131127 - Lx9 LINE L1 -609 7035 6551 1 975 1164 187 121 26 chr12 51126411 51126643 -70130887 + Lx9 LINE L1 7194 7443 -201 1 975 3590 31 28 0 chr12 51126643 51127067 -70130463 + RLTR10C LTR ERVK 1 436 0 1 975 1164 187 121 26 chr12 51127067 51127147 -70130383 + Lx9 LINE L1 7444 7536 -108 1 975 383 0 21 0 chr12 51128212 51128259 -70129271 + (TATAA)n Simple_repeat Simple_repeat 5 52 0 1 975 309 177 41 10 chr12 51128259 51128356 -70129174 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 975 457 16 16 16 chr12 51128364 51128427 -70129103 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 975 284 276 13 27 chr12 51128695 51128844 -70128686 + L1_Mur1 LINE L1 4324 4470 -1410 1 975 361 317 0 0 chr12 51129069 51129151 -70128379 + B3 SINE B2 93 174 -42 1 975 1377 192 126 77 chr12 51129161 51129511 -70128019 - ORR1B2 LTR MaLR 0 367 1 1 975 1148 121 28 92 chr12 51129968 51130186 -70127344 + RLTR19 LTR ERVK 1 204 -295 1 975 532 214 0 10 chr12 51130184 51130283 -70127247 + RLTR19 LTR ERVK 402 499 0 1 975 1537 164 85 4 chr12 51130310 51130591 -70126939 + RLTR19 LTR ERVK 196 499 0 2 975 283 339 116 94 chr12 51130556 51130702 -70126828 + MLT2B4 LTR ERVL 1 208 -348 2 975 805 94 0 0 chr12 51130702 51130808 -70126722 - B1_Mus1 SINE Alu -6 142 37 2 975 306 259 50 107 chr12 51130735 51130856 -70126674 - RLTR25A LTR ERVK -515 588 475 2 975 283 339 116 94 chr12 51130856 51131090 -70126440 + MLT2B4 LTR ERVL 209 546 -10 2 975 472 321 98 44 chr12 51131218 51131423 -70126107 + MTEa LTR MaLR 1 216 -163 2 975 686 167 0 8 chr12 51131423 51131556 -70125974 + CT-rich Low_complexity Low_complexity 3 134 0 2 975 1022 227 139 36 chr12 51131602 51131853 -70125677 - Lx5 LINE L1 -1 7049 6773 2 975 3432 199 52 35 chr12 51131825 51132242 -70125288 + Lx5 LINE L1 6009 6427 -623 2 975 258 106 0 0 chr12 51132242 51132289 -70125241 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 2 975 3432 199 52 35 chr12 51132289 51132621 -70124909 + Lx5 LINE L1 6428 6770 -280 2 975 437 308 112 6 chr12 51132622 51132782 -70124748 + MTEa LTR MaLR 203 379 0 2 975 292 214 107 0 chr12 51132782 51132894 -70124636 - L1MA6 LINE L1 -64 6236 6113 2 975 554 272 12 12 chr12 51132919 51133083 -70124447 + ERVL-B4-int LTR ERVL 36 199 -5515 2 975 2165 248 99 24 chr12 51133089 51134293 -70123237 + L1_Mur3 LINE L1 246 1595 -4285 2 975 6801 89 23 1 chr12 51134292 51135236 -70122294 + L1_Mus4 LINE L1 5668 6632 -4 2 975 5049 83 15 0 chr12 51135337 51136122 -70121408 + L1_Mus3 LINE L1 5921 6638 0 2 975 6049 180 58 26 chr12 51136126 51137320 -70120210 + L1_Mur3 LINE L1 2355 3588 -2292 2 975 1356 256 44 46 chr12 51137320 51137799 -70119731 - RLTR28B LTR ERVL -3 478 1 2 975 6049 180 58 26 chr12 51137799 51138027 -70119503 + L1_Mur3 LINE L1 3589 3823 -2057 2 975 326 173 13 0 chr12 51138027 51138102 -70119428 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 2 975 1078 288 23 45 chr12 51138109 51138552 -70118978 + ERVL-B4-int LTR ERVL 1013 1445 -4269 2 975 4936 58 6 6 chr12 51139194 51139823 -70117707 + L1Md_F2 LINE L1 5943 6571 -11 2 975 1773 249 39 102 chr12 51139961 51140322 -70117208 + RMER6D LTR ERVK 118 485 -235 2 975 1061 109 0 0 chr12 51140322 51140469 -70117061 + B1_Mus1 SINE Alu 1 147 -1 2 975 1773 249 39 102 chr12 51140469 51140597 -70116933 + RMER6D LTR ERVK 486 595 -125 2 975 2586 75 6 0 chr12 51140597 51140945 -70116585 + L1_Mus2 LINE L1 6216 6565 -1 2 975 1773 249 39 102 chr12 51140945 51141098 -70116432 + RMER6D LTR ERVK 596 720 0 2 975 2920 57 9 67 chr12 51141200 51141636 -70115894 + RLTR10A LTR ERVK 1 411 0 2 975 1361 236 160 24 chr12 51141811 51142180 -70115350 + MTD LTR MaLR 1 419 0 2 975 34 65 0 0 chr12 51142464 51142526 -70115004 + AT_rich Low_complexity Low_complexity 1 62 0 2 975 544 295 121 50 chr12 51143249 51143794 -70113736 - L1MA7 LINE L1 -135 6156 5573 2 975 4552 81 45 5 chr12 51143879 51144264 -70113266 - L1_Mus2 LINE L1 -4 6562 6179 2 975 516 32 0 0 chr12 51144264 51144326 -70113204 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 975 4552 81 45 5 chr12 51144326 51144586 -70112944 - L1_Mus2 LINE L1 -388 6178 5893 2 975 9369 136 19 1 chr12 51144586 51146644 -70110886 - L1Md_F LINE L1 -3197 2686 591 2 975 234 0 0 0 chr12 51146853 51146879 -70110651 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 975 207 0 0 0 chr12 51146893 51146916 -70110614 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2 975 914 116 51 0 chr12 51146916 51147054 -70110476 - B1_Mus1 SINE Alu -2 146 2 2 975 325 333 82 15 chr12 51147216 51147350 -70110180 - B4 SINE B4 -137 155 13 2 975 286 243 101 34 chr12 51147360 51147509 -70110021 - L1MA7 LINE L1 -867 5276 5118 2 975 10342 139 25 16 chr12 51148475 51150930 -70106600 + Lx LINE L1 4172 6645 -9 2 975 407 253 94 0 chr12 51151168 51151338 -70106192 - L1MA7 LINE L1 -1053 5090 4905 2 975 2162 144 3 3 chr12 51151456 51151805 -70105725 + Lx LINE L1 6303 6651 -3 2 975 821 338 33 38 chr12 51152050 51152474 -70105056 - Lx9 LINE L1 -517 7127 6706 2 975 560 291 83 26 chr12 51152467 51152806 -70104724 + Lx9 LINE L1 7166 7523 -121 2 975 283 136 0 33 chr12 51152813 51152874 -70104656 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 2 975 202 146 0 24 chr12 51153089 51153131 -70104399 + A-rich Low_complexity Low_complexity 4 44 0 2 975 347 271 25 25 chr12 51154644 51154765 -70102765 - Lx7 LINE L1 -31 7429 7337 2 975 1065 184 18 40 chr12 51154759 51154985 -70102545 - Lx7 LINE L1 -570 7126 6906 2 975 5440 58 0 1 chr12 51155292 51155983 -70101547 + L1Md_F2 LINE L1 5888 6577 -5 2 975 189 171 0 0 chr12 51156626 51156661 -70100869 + (TATG)n Simple_repeat Simple_repeat 1 35 0 2 975 870 318 260 8 chr12 51157471 51157856 -70099674 + Lx8 LINE L1 6848 7329 -144 2 975 531 275 186 32 chr12 51158522 51158770 -70098760 + B4A SINE B4 1 286 -6 2 975 266 180 0 16 chr12 51158795 51158857 -70098673 + GA-rich Low_complexity Low_complexity 1 61 0 2 975 630 309 156 51 chr12 51159295 51159820 -70097710 + Lx9 LINE L1 7060 7639 -5 2 975 4502 102 46 34 chr12 51160159 51160901 -70096629 + RMER17A LTR ERVK 1 751 0 2 975 339 156 64 13 chr12 51160908 51160986 -70096544 - MTD LTR MaLR -2 417 336 2 975 1567 227 30 87 chr12 51160988 51161457 -70096073 - RMER10A LTR ERVL 0 442 1 2 975 1304 235 89 13 chr12 51161459 51161761 -70095769 - MTD LTR MaLR -89 330 6 2 975 365 197 0 0 chr12 51162437 51162498 -70095032 + MLT1G3 LTR MaLR 1 61 -534 2 975 361 345 128 59 chr12 51162552 51162855 -70094675 + MLT1G3 LTR MaLR 154 483 -96 2 975 253 211 44 11 chr12 51163153 51163244 -70094286 + (TATG)n Simple_repeat Simple_repeat 2 95 0 2 975 2335 80 12 15 chr12 51164898 51165227 -70092303 + L1_Mus1 LINE L1 6240 6567 0 2 975 26 0 0 0 chr12 51165318 51165344 -70092186 + AT_rich Low_complexity Low_complexity 1 26 0 2 975 444 379 32 21 chr12 51165858 51166141 -70091389 + L2c LINE L2 3021 3306 -81 2 975 25 0 0 0 chr12 51166443 51166468 -70091062 + AT_rich Low_complexity Low_complexity 1 25 0 2 975 223 304 19 124 chr12 51166561 51166666 -70090864 - B4A SINE B4 -111 181 88 2 975 381 314 18 30 chr12 51167118 51167282 -70090248 + RSINE1 SINE B4 4 165 0 2 975 194 0 0 37 chr12 51167399 51167426 -70090104 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2 975 752 287 82 32 chr12 51168124 51168466 -70089064 - L1ME2 LINE L1 0 6164 5806 2 975 288 241 130 34 chr12 51168707 51168853 -70088677 - Tigger5 DNA MER2_type -2174 232 73 2 975 5000 218 61 1 chr12 51168931 51170358 -70087172 - Lx3A LINE L1 -1 6980 5450 2 975 2093 87 13 7 chr12 51170764 51171065 -70086465 - L1_Mus3 LINE L1 -2 6636 6334 2 975 1154 147 10 0 chr12 51171071 51171268 -70086262 - Lx3A LINE L1 -428 5458 5260 2 975 288 277 10 41 chr12 51171364 51171462 -70086068 - L1ME2 LINE L1 -545 5634 5540 2 975 446 46 15 0 chr12 51171844 51171909 -70085621 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 2 975 651 316 84 57 chr12 51172140 51172402 -70085128 + B4A SINE B4 15 283 -9 2 975 192 40 0 0 chr12 51172407 51172432 -70085098 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 975 549 80 0 0 chr12 51172460 51172535 -70084995 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 975 213 322 102 84 chr12 51176158 51176324 -70081206 - MIRb SINE MIR -48 220 52 2 975 3516 23 0 0 chr12 51176536 51176932 -70080598 - MTA_Mm LTR MaLR 0 396 1 2 975 439 305 103 46 chr12 51177544 51177719 -70079811 + ID_B1 SINE B4 6 190 -34 2 975 960 105 17 17 chr12 51177731 51177905 -70079625 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 2 975 38 39 0 0 chr12 51178149 51178201 -70079329 + AT_rich Low_complexity Low_complexity 1 52 0 2 975 778 281 60 105 chr12 51178235 51178672 -70078858 - RLTR23 LTR ERV1 -6 424 8 2 975 1769 265 29 16 chr12 51178688 51179141 -70078389 - Lx6 LINE L1 -207 7253 6795 2 975 2117 161 18 35 chr12 51179145 51179603 -70077927 + L1_Mur3 LINE L1 2548 2997 -2883 2 975 225 83 0 0 chr12 51179615 51179651 -70077879 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 975 889 170 0 0 chr12 51179684 51179825 -70077705 + B1_Mur4 SINE Alu 1 141 -9 2 975 252 77 0 0 chr12 51179825 51179864 -70077666 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 2 975 1745 153 132 199 chr12 51179885 51180333 -70077197 + L1_Mur3 LINE L1 2994 3464 -2416 2 975 566 89 0 10 chr12 51180333 51180430 -70077100 - B1_Mus1 SINE Alu -56 91 1 2 975 1745 153 132 199 chr12 51180430 51180733 -70076797 + L1_Mur3 LINE L1 3465 3784 -2096 2 975 265 305 81 56 chr12 51181258 51181418 -70076112 - MamRep434 DNA TcMar -176 250 87 2 975 204 323 0 0 chr12 51181628 51181721 -70075809 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 975 549 0 0 0 chr12 51187570 51187631 -70069899 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 975 22 56 0 0 chr12 51189246 51189282 -70068248 + AT_rich Low_complexity Low_complexity 1 36 0 2 975 297 0 0 0 chr12 51189400 51189433 -70068097 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 975 818 104 37 6 chr12 51190245 51190409 -70067121 + (GA)n Simple_repeat Simple_repeat 2 170 0 2 975 22 0 0 0 chr12 51191785 51191807 -70065723 + AT_rich Low_complexity Low_complexity 1 22 0 2 975 376 305 90 33 chr12 51192711 51192734 -70064796 + L1MEg LINE L1 788 808 -5434 2 975 1100 210 4 4 chr12 51192734 51192959 -70064571 + URR1B DNA MER1_type 1 225 0 2 975 376 305 90 33 chr12 51192959 51193179 -70064351 + L1MEg LINE L1 809 1044 -5198 2 975 21 0 0 0 chr12 51193807 51193828 -70063702 + AT_rich Low_complexity Low_complexity 1 21 0 2 975 911 33 8 0 chr12 51193958 51194080 -70063450 - L1Md_T LINE L1 0 6582 6460 2 975 1064 162 16 0 chr12 51194836 51195021 -70062509 - URR1B DNA MER1_type 0 225 38 2 975 1418 248 86 7 chr12 51195063 51195470 -70062060 - Lx5 LINE L1 -7 7043 6605 2 975 674 207 13 7 chr12 51195469 51195620 -70061910 + L1_Mur2 LINE L1 5036 5187 -690 2 975 225 335 102 16 chr12 51195933 51196248 -70061282 + L1MEg LINE L1 4394 4735 -1411 2 975 225 0 0 0 chr12 51196438 51196463 -70061067 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 975 303 305 179 0 chr12 51196505 51196656 -70060874 + L1MEg LINE L1 5047 5224 -922 2 975 26 0 0 0 chr12 51196705 51196731 -70060799 + AT_rich Low_complexity Low_complexity 1 26 0 2 975 2778 73 34 17 chr12 51197168 51197583 -70059947 - L1_Mus4 LINE L1 0 6636 6215 2 975 3267 80 31 3 chr12 51199425 51199881 -70057649 + Lx3_Mus LINE L1 5457 5907 -1102 2 975 384 22 0 0 chr12 51199881 51199926 -70057604 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 975 728 22 11 0 chr12 51199929 51200019 -70057511 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 2 975 3191 78 44 2 chr12 51200019 51200129 -70057401 + Lx3_Mus LINE L1 5908 6030 -979 2 975 976 90 0 0 chr12 51200127 51200260 -70057270 - L1_Mus4 LINE L1 -445 6121 5989 2 975 868 87 21 14 chr12 51200261 51200401 -70057129 + L1_Mus2 LINE L1 6426 6566 0 2 975 4452 92 41 9 chr12 51200401 51201062 -70056468 + Lx3_Mus LINE L1 6032 6713 -296 2 975 378 75 0 0 chr12 51201072 51201139 -70056391 + Lx3_Mus LINE L1 6942 7008 -1 2 975 237 139 0 0 chr12 51201506 51201549 -70055981 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 975 2630 123 52 41 chr12 51201966 51202165 -70055365 - Lx2B LINE L1 -1 6999 6803 2 975 207 0 0 0 chr12 51202165 51202188 -70055342 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 975 1109 72 0 0 chr12 51202188 51202327 -70055203 - B1_Mus1 SINE Alu -9 139 1 3 975 2630 123 52 41 chr12 51202327 51202609 -70054921 - Lx2B LINE L1 -198 6802 6513 2 975 1492 249 27 16 chr12 51203761 51204132 -70053398 + MTC LTR MaLR 40 414 -7 3 975 1337 245 104 123 chr12 51204144 51204777 -70052753 + MTC-int LTR MaLR 520 1140 -118 3 975 266 245 52 124 chr12 51204758 51204894 -70052636 + MTC-int LTR MaLR 1043 1170 -88 3 975 1582 64 0 0 chr12 51204894 51205098 -70052432 - L1Md_T LINE L1 -2 6580 6377 3 975 266 245 52 124 chr12 51205098 51205194 -70052336 + MTC-int LTR MaLR 1171 1258 0 3 975 1235 272 14 7 chr12 51205198 51205494 -70052036 + MTC LTR MaLR 5 302 -119 3 975 22 0 0 0 chr12 51205677 51205699 -70051831 + AT_rich Low_complexity Low_complexity 1 22 0 3 975 322 262 154 31 chr12 51206412 51206542 -70050988 + MER5A1 DNA MER1_type 16 161 -5 3 975 243 303 89 11 chr12 51206557 51206647 -70050883 + MER5A DNA MER1_type 2 98 -91 3 975 687 127 22 15 chr12 51207996 51208132 -70049398 + L1Md_F2 LINE L1 6446 6582 0 3 975 606 269 20 20 chr12 51208195 51208343 -70049187 - B1_Mur4 SINE Alu -2 148 1 3 975 369 0 0 0 chr12 51208958 51208999 -70048531 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 975 369 0 0 0 chr12 51208999 51209039 -70048491 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 975 222 37 0 0 chr12 51210253 51210280 -70047250 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 975 243 0 0 0 chr12 51210280 51210306 -70047224 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 975 22 0 0 0 chr12 51210620 51210642 -70046888 + AT_rich Low_complexity Low_complexity 1 22 0 3 975 31 44 0 0 chr12 51211830 51211875 -70045655 + AT_rich Low_complexity Low_complexity 1 45 0 3 975 576 65 0 0 chr12 51212174 51212251 -70045279 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 975 455 0 18 0 chr12 51214833 51214888 -70042642 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 975 660 48 0 0 chr12 51215252 51215336 -70042194 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 975 243 0 0 0 chr12 51216605 51216632 -70040898 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 975 464 0 18 0 chr12 51218645 51218701 -70038829 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 975 23 0 0 0 chr12 51220230 51220253 -70037277 + AT_rich Low_complexity Low_complexity 1 23 0 3 975 22 70 0 0 chr12 51220310 51220353 -70037177 + AT_rich Low_complexity Low_complexity 1 43 0 3 975 333 82 0 0 chr12 51220358 51220407 -70037123 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 975 189 0 0 0 chr12 51220407 51220427 -70037103 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 975 396 97 0 0 chr12 51222668 51222730 -70034800 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 975 936 145 0 0 chr12 51223926 51224085 -70033445 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 3 975 21 0 0 0 chr12 51225752 51225773 -70031757 + AT_rich Low_complexity Low_complexity 1 21 0 3 975 6030 47 3 7 chr12 51226334 51227087 -70030443 + L1Md_F2 LINE L1 5831 6580 -2 3 975 29 60 0 0 chr12 51227851 51227901 -70029629 + AT_rich Low_complexity Low_complexity 1 50 0 3 975 356 200 0 12 chr12 51227909 51227995 -70029535 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 975 369 0 0 0 chr12 51227999 51228040 -70029490 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 975 866 148 7 0 chr12 51228045 51228180 -70029350 - B1_Mur4 SINE Alu -14 136 1 3 975 23571 128 15 94 chr12 51229086 51232697 -70024833 + L1Md_F LINE L1 423 3560 -2323 3 975 4911 58 2 0 chr12 51232697 51233313 -70024217 + L1Md_F2 LINE L1 5964 6580 -2 3 975 23571 114 3 114 chr12 51233313 51235068 -70022462 + L1Md_F LINE L1 3561 5312 -571 3 975 487 320 108 3 chr12 51235547 51235907 -70021623 - L1MD1 LINE L1 -118 6124 5727 3 975 568 294 35 113 chr12 51235934 51236137 -70021393 + B3A SINE B2 1 187 -8 3 975 527 289 73 10 chr12 51236139 51236345 -70021185 - L1MD1 LINE L1 -533 5709 5491 3 975 1823 283 59 58 chr12 51236496 51236868 -70020662 - L1MC1 LINE L1 -133 6200 5821 3 975 297 0 0 0 chr12 51236868 51236901 -70020629 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 975 1823 283 59 58 chr12 51236901 51237261 -70020269 - L1MC1 LINE L1 -513 5820 5461 3 975 207 0 0 0 chr12 51237261 51237284 -70020246 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 975 1054 58 43 0 chr12 51237284 51237423 -70020107 - B1_Mm SINE Alu -2 145 1 3 975 1823 282 43 64 chr12 51237423 51237661 -70019869 - L1MC1 LINE L1 -873 5460 5227 3 975 18229 57 2 1 chr12 51237683 51240731 -70016799 - L1Md_F2 LINE L1 0 6582 3531 3 975 261 239 43 92 chr12 51240757 51240941 -70016589 - L1MD1 LINE L1 -925 5434 5260 3 975 360 301 123 56 chr12 51241171 51241562 -70015968 - L1MD1 LINE L1 -1890 4256 3840 3 975 556 85 0 41 chr12 51241859 51241957 -70015573 - Lx2 LINE L1 0 6997 6904 3 975 328 20 41 0 chr12 51242089 51242138 -70015392 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 3 975 300 333 83 28 chr12 51242246 51242391 -70015139 - HAL1-3A_ME LINE L1 -421 2437 2285 3 975 477 94 23 12 chr12 51242396 51242482 -70015048 + (TC)n Simple_repeat Simple_repeat 1 87 0 3 975 3417 212 60 28 chr12 51242669 51243870 -70013660 - L1_Rod LINE L1 -2190 1724 494 3 975 398 220 133 35 chr12 51243964 51244077 -70013453 - B4A SINE B4 -167 125 2 3 975 232 228 17 129 chr12 51244757 51244873 -70012657 + MER53 DNA hAT 1 103 -90 3 975 271 185 31 0 chr12 51244811 51244876 -70012654 - MER53 DNA hAT -32 161 95 3 975 583 13 26 0 chr12 51244876 51244952 -70012578 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 975 22 0 0 0 chr12 51245629 51245651 -70011879 + AT_rich Low_complexity Low_complexity 1 22 0 3 975 1367 267 85 8 chr12 51248743 51249120 -70008410 - MTD LTR MaLR 0 419 14 3 976 1905 266 204 83 chr12 51249162 51250261 -70007269 - MTD-int LTR MaLR -25 1233 2 3 976 1345 267 73 35 chr12 51250262 51250459 -70007071 - MTD LTR MaLR 0 419 226 3 976 1045 227 13 196 chr12 51250459 51250623 -70006907 + ORR1D1 LTR MaLR 3 164 -210 3 976 297 0 0 0 chr12 51250623 51250656 -70006874 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 976 303 28 0 0 chr12 51250656 51250691 -70006839 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 976 1045 227 13 196 chr12 51250691 51250980 -70006550 + ORR1D1 LTR MaLR 165 373 -1 3 976 1345 267 73 35 chr12 51250980 51251178 -70006352 - MTD LTR MaLR -194 225 9 3 976 24 0 0 0 chr12 51251268 51251292 -70006238 + AT_rich Low_complexity Low_complexity 1 24 0 3 976 201 158 0 0 chr12 51251598 51251636 -70005894 + T-rich Low_complexity Low_complexity 1 38 0 3 976 756 86 14 41 chr12 51251652 51251798 -70005732 - L1_Mus3 LINE L1 0 6638 6497 3 976 823 198 126 4 chr12 51251798 51252037 -70005493 - L1MA8 LINE L1 -32 6259 5992 3 976 707 177 0 6 chr12 51252621 51252786 -70004744 + (TG)n Simple_repeat Simple_repeat 2 165 0 3 976 640 312 25 13 chr12 51252905 51253064 -70004466 - RSINE1 SINE B4 0 165 5 3 976 277 361 70 35 chr12 51253328 51253543 -70003987 + MIR SINE MIR 31 241 -21 3 976 23 33 0 0 chr12 51254155 51254185 -70003345 + AT_rich Low_complexity Low_complexity 1 30 0 3 976 531 0 0 0 chr12 51256371 51256430 -70001100 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 976 569 312 25 0 chr12 51256849 51257006 -70000524 + B3 SINE B2 2 162 -54 3 976 764 259 31 5 chr12 51257008 51257202 -70000328 - B3 SINE B2 -13 203 5 3 976 1174 120 5 5 chr12 51257402 51257595 -69999935 - Lx LINE L1 0 6654 6462 3 976 1058 104 49 0 chr12 51257597 51257760 -69999770 + B2_Mm2 SINE B2 23 193 -2 3 976 28 48 0 0 chr12 51258079 51258121 -69999409 + AT_rich Low_complexity Low_complexity 1 42 0 3 976 474 298 90 45 chr12 51260383 51260583 -69996947 + MTEa LTR MaLR 9 217 -162 3 976 283 121 17 0 chr12 51260757 51260815 -69996715 + L1Md_T LINE L1 6523 6581 -1 3 976 286 358 120 55 chr12 51261260 51261443 -69996087 + MTEa LTR MaLR 142 336 -43 3 976 23 0 0 0 chr12 51262719 51262742 -69994788 + AT_rich Low_complexity Low_complexity 1 23 0 3 976 357 62 0 0 chr12 51263616 51263664 -69993866 + (T)n Simple_repeat Simple_repeat 1 48 0 3 976 1099 142 31 5 chr12 51264551 51264742 -69992788 + Lx2B LINE L1 6241 6436 -564 3 976 1734 217 24 29 chr12 51264737 51265146 -69992384 + Lx2B LINE L1 6573 6979 -21 3 976 237 83 0 0 chr12 51265411 51265447 -69992083 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 3 976 630 226 128 14 chr12 51267240 51267451 -69990079 - MER2 DNA MER2_type -67 278 44 3 976 21 0 0 0 chr12 51269553 51269574 -69987956 + AT_rich Low_complexity Low_complexity 1 21 0 3 976 864 306 23 44 chr12 51270259 51270687 -69986843 - MTD LTR MaLR 0 419 1 3 976 1318 296 104 86 chr12 51270687 51271758 -69985772 - MTD-int LTR MaLR 0 1098 9 3 976 1187 256 84 11 chr12 51271763 51272124 -69985406 - MTD LTR MaLR 0 419 1 3 976 611 328 56 26 chr12 51272124 51272350 -69985180 + B4 SINE B4 50 282 -10 3 976 8369 34 1 0 chr12 51274455 51275444 -69982086 - L1Md_A LINE L1 -2 6580 5591 3 976 6907 31 1 1 chr12 51275443 51276269 -69981261 + L1Md_A LINE L1 4810 5635 -248 3 976 372 133 0 0 chr12 51277174 51277234 -69980296 + (GGGGA)n Simple_repeat Simple_repeat 5 64 0 3 976 227 55 51 64 chr12 51277355 51277433 -69980097 + A-rich Low_complexity Low_complexity 2 78 0 3 976 240 256 98 65 chr12 51277497 51277589 -69979941 + ID_B1 SINE B4 128 222 -2 3 976 367 321 28 0 chr12 51277870 51277976 -69979554 + RSINE1 SINE B4 3 111 -54 3 976 1912 172 76 3 chr12 51278123 51278491 -69979039 + Lx2 LINE L1 6040 6434 -563 3 976 1962 115 89 3 chr12 51278491 51278815 -69978715 + Lx LINE L1 6298 6649 -5 3 976 486 0 0 0 chr12 51279206 51279260 -69978270 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 976 206 216 0 13 chr12 51279261 51279336 -69978194 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 976 323 305 69 23 chr12 51279360 51279491 -69978039 - Lx8 LINE L1 -161 7312 7176 3 976 1579 259 60 15 chr12 51279485 51280124 -69977406 + Lx7 LINE L1 5319 5981 -1715 3 976 2306 25 7 4 chr12 51281626 51281904 -69975626 + L1Md_F3 LINE L1 6305 6583 -1 3 976 229 384 57 29 chr12 51284057 51284266 -69973264 + MIR SINE MIR 9 223 -39 3 976 243 339 73 48 chr12 51284826 51284950 -69972580 - MER5A1 DNA MER1_type -37 129 3 3 976 497 196 14 27 chr12 51286072 51286219 -69971311 + GA-rich Low_complexity Low_complexity 1 145 0 3 976 22 35 0 0 chr12 51289483 51289512 -69968018 + AT_rich Low_complexity Low_complexity 1 29 0 3 976 544 119 42 0 chr12 51294031 51294149 -69963381 + CT-rich Low_complexity Low_complexity 1 123 0 3 976 768 136 0 0 chr12 51294823 51294948 -69962582 + (GAAAA)n Simple_repeat Simple_repeat 1 125 0 3 976 1160 102 11 0 chr12 51298163 51298340 -69959190 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 976 22 0 0 0 chr12 51301100 51301122 -69956408 + AT_rich Low_complexity Low_complexity 1 22 0 3 976 469 293 84 78 chr12 51301783 51302282 -69955248 - L1MB3 LINE L1 -245 5938 5437 4 976 351 0 0 0 chr12 51303068 51303107 -69954423 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 976 266 73 24 0 chr12 51303124 51303165 -69954365 + (GGGAGA)n Simple_repeat Simple_repeat 2 43 0 4 976 3560 253 107 28 chr12 51303534 51305290 -69952240 + L1_Rod LINE L1 1617 3510 -2337 4 976 827 281 45 55 chr12 51305970 51306178 -69951352 + Lx5 LINE L1 893 1092 -6636 4 976 519 60 0 0 chr12 51306178 51306245 -69951285 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 976 12145 196 92 18 chr12 51306245 51309410 -69948120 + Lx5 LINE L1 1027 4441 -1436 4 976 4353 245 34 57 chr12 51309408 51311320 -69946210 + Lx5 LINE L1 5025 6886 -164 4 976 216 97 0 0 chr12 51311320 51311351 -69946179 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 976 3162 50 2 2 chr12 51311351 51311748 -69945782 - L1Md_F2 LINE L1 -14 6568 6172 4 976 4353 268 42 83 chr12 51311748 51311913 -69945617 + Lx5 LINE L1 6887 7049 -1 4 976 415 265 82 47 chr12 51311959 51312203 -69945327 + L1M3 LINE L1 3510 3771 -2375 4 976 3879 85 23 0 chr12 51312203 51312734 -69944796 + Lx3_Mus LINE L1 6467 7009 0 4 976 338 264 83 47 chr12 51312734 51312746 -69944784 + L1M3 LINE L1 3772 3781 -2365 4 976 643 362 51 31 chr12 51312742 51313132 -69944398 + Lx8 LINE L1 6879 7276 -197 4 976 340 47 0 0 chr12 51313180 51313223 -69944307 - Lx3_Mus LINE L1 -392 6617 6575 4 976 1354 128 11 35 chr12 51313417 51313677 -69943853 + Lx2A1 LINE L1 6755 7008 0 4 976 1668 97 54 8 chr12 51313679 51313940 -69943590 + L1_Mus3 LINE L1 6362 6634 -4 4 976 586 294 66 5 chr12 51314045 51314243 -69943287 + B3 SINE B2 3 212 -4 4 976 466 266 62 24 chr12 51314289 51314539 -69942991 + Lx7 LINE L1 5615 5886 -1587 4 976 343 193 86 68 chr12 51314963 51315080 -69942450 - L1M4 LINE L1 -2119 4021 3903 4 976 3512 47 9 11 chr12 51315111 51315559 -69941971 - L1Md_F2 LINE L1 -2 6580 6134 4 976 391 22 0 0 chr12 51315561 51315606 -69941924 + L1Md_F2 LINE L1 6127 6171 -411 4 976 1209 61 0 0 chr12 51315853 51316001 -69941529 + B1_Mus1 SINE Alu 1 148 0 4 976 577 226 72 67 chr12 51316053 51316276 -69941254 - L1_Mur3 LINE L1 -2550 3330 3107 4 976 437 289 74 0 chr12 51316307 51316456 -69941074 - Lx6 LINE L1 -22 7438 7279 4 976 1262 303 30 6 chr12 51316469 51316831 -69940699 + Lx5 LINE L1 6059 6429 -621 4 976 12864 195 47 102 chr12 51316820 51318483 -69939047 - Lx6 LINE L1 -1345 6115 4626 4 976 229 26 53 0 chr12 51318483 51318521 -69939009 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 976 12864 193 48 116 chr12 51318521 51319955 -69937575 - Lx6 LINE L1 -1255 4625 3326 4 976 2822 60 8 3 chr12 51319955 51320326 -69937204 - L1Md_F3 LINE L1 0 6584 6212 4 976 1373 143 80 0 chr12 51320324 51320428 -69937102 - Lx LINE L1 -10 6644 6521 4 976 192 77 0 0 chr12 51320428 51320454 -69937076 + (CCCA)n Simple_repeat Simple_repeat 3 28 0 4 976 1373 143 80 0 chr12 51320454 51320600 -69936930 - Lx LINE L1 -134 6520 6375 4 976 12864 193 48 116 chr12 51320600 51321545 -69935985 - Lx6 LINE L1 -2555 3325 2326 4 976 4249 126 127 68 chr12 51321545 51322397 -69935133 + RLTR13D6 LTR ERVK 1 902 0 4 976 12864 193 48 116 chr12 51322397 51322501 -69935029 - Lx6 LINE L1 -3555 2325 2226 4 976 558 192 14 7 chr12 51322501 51322648 -69934882 + (TA)n Simple_repeat Simple_repeat 2 149 0 4 976 1351 288 39 13 chr12 51323521 51323911 -69933619 - MTD LTR MaLR -6 413 14 4 976 926 260 19 30 chr12 51323915 51324304 -69933226 + L1_Rod LINE L1 4121 4515 -1362 4 976 2641 84 11 0 chr12 51324304 51324659 -69932871 + MTA_Mm LTR MaLR 38 396 0 4 976 1819 200 38 16 chr12 51324659 51325102 -69932428 + L1_Rod LINE L1 4770 5222 -625 4 976 22 0 0 0 chr12 51325103 51325125 -69932405 + AT_rich Low_complexity Low_complexity 1 22 0 4 976 1196 124 16 16 chr12 51325125 51325313 -69932217 + B2_Mm2 SINE B2 5 192 -3 4 976 473 170 159 9 chr12 51325389 51325502 -69932028 + L1_Rod LINE L1 5260 5389 -458 4 976 249 108 0 0 chr12 51325544 51325581 -69931949 + (GGA)n Simple_repeat Simple_repeat 3 39 0 4 976 820 111 0 15 chr12 51325574 51325711 -69931819 + (GGAA)n Simple_repeat Simple_repeat 1 135 0 4 976 706 238 45 40 chr12 51325745 51325946 -69931584 + Lx9 LINE L1 6306 6507 -1137 4 976 395 194 0 0 chr12 51325935 51326002 -69931528 + Lx8 LINE L1 6638 6704 -769 4 976 294 221 23 76 chr12 51325991 51326123 -69931407 - Lx7 LINE L1 -13 7683 7559 4 976 627 14 0 0 chr12 51326176 51326248 -69931282 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 976 297 0 0 0 chr12 51326248 51326280 -69931250 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 976 1139 205 96 7 chr12 51326288 51326558 -69930972 - Lx7 LINE L1 -292 7404 7111 4 976 26 74 0 0 chr12 51326997 51327051 -69930479 + AT_rich Low_complexity Low_complexity 1 54 0 4 976 423 0 0 0 chr12 51327073 51327120 -69930410 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 976 1288 294 58 25 chr12 51327209 51327642 -69929888 - Lx8 LINE L1 -597 6876 6430 4 976 3831 137 3 2 chr12 51327653 51328232 -69929298 - Lx LINE L1 -7 6647 6068 4 976 4156 80 22 0 chr12 51328232 51328783 -69928747 + Lx3_Mus LINE L1 6293 6855 -154 4 976 727 244 62 79 chr12 51328801 51329028 -69928502 - Lx8 LINE L1 -1063 6410 6188 4 976 453 222 0 17 chr12 51329090 51329269 -69928261 + (TG)n Simple_repeat Simple_repeat 2 177 0 4 976 23897 104 7 6 chr12 51329410 51333674 -69923856 - L1Md_F2 LINE L1 0 6582 2314 4 976 306 275 6 38 chr12 51333701 51333860 -69923670 - L1_Mur1 LINE L1 -4146 1740 1587 4 976 526 286 160 12 chr12 51334293 51334448 -69923082 - Lx8 LINE L1 0 7473 7282 4 976 285 29 0 0 chr12 51334448 51334482 -69923048 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 976 297 0 0 0 chr12 51334482 51334514 -69923016 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 976 526 286 160 12 chr12 51334514 51334676 -69922854 - Lx8 LINE L1 -192 7281 7109 4 976 34 42 0 0 chr12 51334836 51334884 -69922646 + AT_rich Low_complexity Low_complexity 1 48 0 4 976 2593 59 0 0 chr12 51335907 51336245 -69921285 + L1Md_F2 LINE L1 5920 6257 -325 4 976 2397 68 0 9 chr12 51336277 51336621 -69920909 - MusHAL1 LINE L1 -1569 1143 803 4 976 2310 59 36 7 chr12 51336908 51337216 -69920314 + L1Md_F2 LINE L1 6265 6581 -1 4 976 2476 288 50 62 chr12 51337482 51337920 -69919610 - Lx8 LINE L1 -2 7471 7009 4 976 206 0 69 0 chr12 51337920 51337949 -69919581 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 4 976 2476 288 50 62 chr12 51337949 51338659 -69918871 - Lx8 LINE L1 -465 7008 6337 4 976 5045 239 46 22 chr12 51338669 51338868 -69918662 - Lx6 LINE L1 -461 6999 6779 4 976 1048 125 32 46 chr12 51338868 51339086 -69918444 + Lx2B LINE L1 6783 6997 -3 4 976 5045 239 46 22 chr12 51339086 51339108 -69918422 - Lx6 LINE L1 -682 6778 6756 4 976 6616 107 17 4 chr12 51339108 51340069 -69917461 - Lx3_Mus LINE L1 -8 7001 6029 4 976 5045 225 38 23 chr12 51340069 51341401 -69916129 - Lx6 LINE L1 -705 6755 5415 4 976 7620 160 63 6 chr12 51341404 51342650 -69914880 - Lx6 LINE L1 -898 4982 3662 4 976 989 134 6 0 chr12 51342650 51342822 -69914708 + (TTTC)n Simple_repeat Simple_repeat 3 175 0 4 976 7620 160 63 6 chr12 51342822 51343207 -69914323 - Lx6 LINE L1 -2219 3661 3260 4 976 39369 7 0 1 chr12 51343186 51349969 -69907561 - L1Md_A LINE L1 0 6582 1 4 976 4773 176 22 77 chr12 51349982 51350627 -69906903 - Lx6 LINE L1 -2633 3247 2661 4 976 1701 186 60 17 chr12 51350627 51350977 -69906553 + ORR1B2 LTR MaLR 3 367 0 4 976 4773 176 22 77 chr12 51350977 51351110 -69906420 - Lx6 LINE L1 -3220 2660 2529 4 976 4332 175 57 23 chr12 51351110 51351988 -69905542 - RMER13B LTR ERVK 0 908 1 4 976 4773 176 22 77 chr12 51351988 51352468 -69905062 - Lx6 LINE L1 -3352 2528 2058 4 976 180 0 0 0 chr12 51352468 51352488 -69905042 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 976 4773 176 22 77 chr12 51352488 51352548 -69904982 - Lx6 LINE L1 -3823 2057 2000 4 976 650 297 80 9 chr12 51352551 51352872 -69904658 - Lx6 LINE L1 -7042 686 309 4 976 351 301 19 19 chr12 51352880 51352985 -69904545 - L2a LINE L2 -8 3418 3314 4 976 1567 257 215 14 chr12 51353121 51353619 -69903911 + RMER1C Other Other 597 1190 -152 4 976 222 62 0 0 chr12 51353619 51353651 -69903879 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 976 1567 254 224 15 chr12 51353651 51353790 -69903740 + RMER1C Other Other 1191 1340 -2 4 976 26655 26 1 0 chr12 51354926 51358916 -69898614 - L1Md_T LINE L1 0 6582 2589 4 976 468 319 57 10 chr12 51359252 51359445 -69898085 - ID_B1 SINE B4 -21 203 2 4 976 244 276 17 0 chr12 51359653 51359711 -69897819 - ID4_ SINE ID -23 60 2 4 976 28 0 0 0 chr12 51361083 51361111 -69896419 + AT_rich Low_complexity Low_complexity 1 28 0 4 976 30 0 0 0 chr12 51361438 51361468 -69896062 + AT_rich Low_complexity Low_complexity 1 30 0 4 976 24 0 0 0 chr12 51361496 51361520 -69896010 + AT_rich Low_complexity Low_complexity 1 24 0 4 976 1391 142 113 0 chr12 51363169 51363443 -69894087 + Lx2A1 LINE L1 6704 7008 0 4 976 504 214 0 0 chr12 51363447 51363559 -69893971 + (TA)n Simple_repeat Simple_repeat 1 112 0 4 976 221 0 35 0 chr12 51363564 51363593 -69893937 + (CAA)n Simple_repeat Simple_repeat 3 32 0 4 976 473 0 18 0 chr12 51363764 51363821 -69893709 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 4 976 1005 46 123 0 chr12 51363821 51363951 -69893579 - B1_Mus1 SINE Alu -2 146 1 4 976 269 246 119 90 chr12 51364108 51364242 -69893288 - Tigger7 DNA MER2_type -1879 612 475 4 976 521 319 81 43 chr12 51364266 51364476 -69893054 - Tigger7 DNA MER2_type -2143 348 131 4 976 206 237 0 50 chr12 51364480 51364560 -69892970 + T-rich Low_complexity Low_complexity 1 76 0 4 976 297 263 98 7 chr12 51365250 51365403 -69892127 + L1MC3 LINE L1 7612 7778 -7 4 976 31 26 0 0 chr12 51365506 51365544 -69891986 + AT_rich Low_complexity Low_complexity 1 38 0 4 976 275 306 101 7 chr12 51365669 51365807 -69891723 + MIR SINE MIR 112 262 0 4 976 248 333 40 20 chr12 51366964 51367065 -69890465 - LTR33 LTR ERVL -13 502 400 4 976 214 354 0 35 chr12 51367569 51367654 -69889876 + B4A SINE B4 5 86 -206 4 976 1545 340 100 6 chr12 51367668 51368565 -69888965 + Lx8 LINE L1 6343 7324 -149 4 976 499 363 32 43 chr12 51368789 51368976 -69888554 + B4A SINE B4 108 292 0 4 976 294 29 0 0 chr12 51370063 51370098 -69887432 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 976 1086 313 99 20 chr12 51372183 51372578 -69884952 + Tigger5 DNA MER2_type 2 427 -1979 4 976 3020 80 28 2 chr12 51372578 51373004 -69884526 - Lx3_Mus LINE L1 -37 6972 6536 4 976 3310 298 102 28 chr12 51373006 51374346 -69883184 + Tigger5 DNA MER2_type 414 1852 -554 4 976 428 292 116 15 chr12 51374647 51374845 -69882685 + RMER15 LTR ERVL 355 572 -3 4 976 1644 259 54 11 chr12 51374846 51375307 -69882223 + Tigger5 DNA MER2_type 1863 2343 -63 4 976 874 197 66 48 chr12 51375456 51375684 -69881846 - Lx5 LINE L1 -134 6916 6702 4 976 270 312 188 0 chr12 51376085 51376213 -69881317 - MIR SINE MIR 0 262 111 4 976 30 0 0 0 chr12 51376457 51376487 -69881043 + AT_rich Low_complexity Low_complexity 1 30 0 4 976 327 353 21 42 chr12 51376538 51376680 -69880850 + ID_B1 SINE B4 86 224 0 4 976 267 262 0 0 chr12 51376701 51376781 -69880749 + GA-rich Low_complexity Low_complexity 1 80 0 4 976 22 0 0 0 chr12 51377561 51377583 -69879947 + AT_rich Low_complexity Low_complexity 1 22 0 4 976 287 319 64 0 chr12 51378590 51378684 -69878846 - MER5A DNA MER1_type -26 163 64 4 976 252 331 49 70 chr12 51378887 51379030 -69878500 + ID_B1 SINE B4 18 157 -67 4 977 324 0 0 0 chr12 51383352 51383388 -69874142 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 977 288 0 0 0 chr12 51383388 51383419 -69874111 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 977 5618 69 6 3 chr12 51383532 51384258 -69873272 - L1_Mus1 LINE L1 0 6567 5840 5 977 1043 85 35 0 chr12 51384287 51384428 -69873102 - B1_Mm SINE Alu 0 147 2 5 977 387 0 0 0 chr12 51384685 51384728 -69872802 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 977 451 0 34 0 chr12 51384728 51384786 -69872744 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 977 518 319 58 23 chr12 51384828 51385001 -69872529 - B3 SINE B2 -30 186 8 5 977 198 0 0 0 chr12 51385097 51385119 -69872411 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 977 277 356 129 0 chr12 51385127 51385228 -69872302 - ID_B1 SINE B4 -4 220 107 5 977 702 102 23 0 chr12 51385241 51385362 -69872168 + RMER6C LTR ERVK 1 167 -553 5 977 726 12 0 0 chr12 51385438 51385521 -69872009 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 977 1780 133 61 3 chr12 51385521 51385816 -69871714 + RMER6C LTR ERVK 379 690 0 5 977 427 312 113 0 chr12 51385923 51386064 -69871466 + B3 SINE B2 2 158 -58 5 977 399 41 0 0 chr12 51386074 51386123 -69871407 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 977 3252 70 5 5 chr12 51386767 51387198 -69870332 - L1_Mus2 LINE L1 -1 6565 6135 5 977 479 263 90 13 chr12 51387263 51387529 -69870001 + Lx8 LINE L1 7155 7468 -5 5 977 1101 178 0 72 chr12 51388002 51388238 -69869292 - URR1B DNA MER1_type -6 219 1 5 977 252 59 0 0 chr12 51388936 51388970 -69868560 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 977 267 40 40 0 chr12 51389543 51389593 -69867937 + L1_Mus4 LINE L1 6583 6634 -2 5 977 306 0 0 0 chr12 51389609 51389643 -69867887 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 5 977 24 0 0 0 chr12 51389770 51389794 -69867736 + AT_rich Low_complexity Low_complexity 1 24 0 5 977 4471 117 43 3 chr12 51390394 51391088 -69866442 + Lx LINE L1 5926 6647 -7 5 977 21 36 0 0 chr12 51391207 51391235 -69866295 + AT_rich Low_complexity Low_complexity 1 28 0 5 977 1244 122 51 21 chr12 51392664 51392899 -69864631 + Lx2 LINE L1 6754 6995 -2 5 977 936 220 169 14 chr12 51392909 51393199 -69864331 + Lx2B LINE L1 6666 7000 0 5 977 713 290 5 37 chr12 51393918 51394133 -69863397 - B3 SINE B2 -6 210 3 5 977 429 20 0 0 chr12 51394439 51394489 -69863041 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 977 287 49 24 0 chr12 51394702 51394743 -69862787 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 5 977 844 161 39 26 chr12 51394743 51394896 -69862634 - B2_Mm2 SINE B2 -38 157 3 5 977 431 319 91 14 chr12 51400544 51400687 -69856843 + RSINE1 SINE B4 12 165 0 5 977 219 103 0 0 chr12 51402320 51402359 -69855171 + (A)n Simple_repeat Simple_repeat 1 39 0 5 977 199 351 40 13 chr12 51403139 51403214 -69854316 + MIRb SINE MIR 99 175 -93 5 977 1138 254 139 0 chr12 51403831 51404154 -69853376 + ORR1D2 LTR MaLR 1 368 -2 5 977 378 206 155 0 chr12 51404656 51404753 -69852777 - L2a LINE L2 -4 3422 3311 5 977 5570 134 47 31 chr12 51406047 51407596 -69849934 - L1_Mus2 LINE L1 0 6566 4995 5 977 3632 123 5 22 chr12 51407582 51408165 -69849365 + L1_Mus2 LINE L1 4430 5002 -881 5 977 661 264 0 0 chr12 51408497 51408645 -69848885 - B1_Mur3 SINE Alu -1 148 1 5 977 231 88 0 0 chr12 51408652 51408686 -69848844 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 977 5610 191 58 7 chr12 51410816 51411942 -69845588 + Lx3C LINE L1 5792 6974 -2 5 977 27 29 0 0 chr12 51413187 51413221 -69844309 + AT_rich Low_complexity Low_complexity 1 34 0 5 977 432 0 0 0 chr12 51413782 51413830 -69843700 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 5 977 1171 93 51 28 chr12 51413831 51414008 -69843522 - B2_Mm2 SINE B2 -13 182 2 5 977 320 355 32 38 chr12 51414769 51414927 -69842603 - RSINE1 SINE B4 -6 159 3 5 977 204 40 0 0 chr12 51417491 51417516 -69840014 + (T)n Simple_repeat Simple_repeat 1 25 0 5 977 25 0 0 0 chr12 51417519 51417544 -69839986 + AT_rich Low_complexity Low_complexity 1 25 0 5 977 335 271 40 40 chr12 51417656 51417756 -69839774 + PB1 SINE Alu 21 120 -7 5 977 587 219 18 0 chr12 51418275 51418389 -69839141 + ID_B1 SINE B4 109 224 0 5 977 206 248 81 94 chr12 51418490 51418650 -69838880 + L2c LINE L2 3223 3380 -7 5 977 23 0 0 0 chr12 51419378 51419401 -69838129 + AT_rich Low_complexity Low_complexity 1 23 0 5 977 28 29 0 0 chr12 51419420 51419455 -69838075 + AT_rich Low_complexity Low_complexity 1 35 0 5 977 189 195 0 0 chr12 51419560 51419601 -69837929 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 977 371 314 190 19 chr12 51419672 51419935 -69837595 + MLT1C LTR MaLR 65 372 -95 5 977 2767 243 50 37 chr12 51420491 51421325 -69836205 - Lx9 LINE L1 -1 7643 6799 5 977 545 295 169 0 chr12 51421344 51421527 -69836003 + Lx9 LINE L1 6547 6760 -884 5 977 731 272 6 6 chr12 51421566 51421747 -69835783 + B3A SINE B2 2 182 -16 5 977 378 173 0 0 chr12 51421768 51421843 -69835687 + (CATA)n Simple_repeat Simple_repeat 4 78 0 5 977 21 57 0 0 chr12 51421844 51421879 -69835651 + AT_rich Low_complexity Low_complexity 1 35 0 5 977 180 111 0 0 chr12 51421898 51421925 -69835605 + (CATG)n Simple_repeat Simple_repeat 2 28 0 5 977 30 27 0 0 chr12 51421997 51422034 -69835496 + AT_rich Low_complexity Low_complexity 1 37 0 5 977 1114 82 7 0 chr12 51422040 51422186 -69835344 - B1_Mus2 SINE Alu 0 147 1 5 977 612 40 0 0 chr12 51422192 51422267 -69835263 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 5 977 767 86 0 0 chr12 51422343 51422448 -69835082 - B1_Mus1 SINE Alu -43 105 1 5 977 424 294 97 20 chr12 51422988 51423391 -69834139 + L1ME1 LINE L1 2129 2562 -3581 5 977 272 238 46 11 chr12 51423404 51423578 -69833952 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 977 34 79 0 0 chr12 51423590 51423666 -69833864 + AT_rich Low_complexity Low_complexity 1 76 0 5 977 24 67 0 0 chr12 51423683 51423728 -69833802 + AT_rich Low_complexity Low_complexity 1 45 0 5 977 215 158 82 31 chr12 51423749 51423847 -69833683 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 5 977 1086 327 49 35 chr12 51423848 51424820 -69832710 + L1ME1 LINE L1 2584 3569 -2574 5 977 537 380 50 21 chr12 51424823 51425105 -69832425 + B4A SINE B4 3 292 0 5 977 279 256 67 111 chr12 51425261 51425326 -69832204 + MT2B2 LTR ERVL 93 149 -435 5 977 760 214 14 7 chr12 51425326 51425467 -69832063 + B1_Mur4 SINE Alu 2 143 -7 5 977 315 301 43 93 chr12 51425334 51425495 -69832035 + B4A SINE B4 94 246 -46 5 977 823 299 53 19 chr12 51425496 51425912 -69831618 + L1ME1 LINE L1 3759 4188 -1955 5 977 1946 225 56 51 chr12 51425888 51425995 -69831535 + Lx7 LINE L1 7124 7229 -467 5 977 2567 171 70 12 chr12 51425995 51426493 -69831037 + RLTR11A2 LTR ERVK 1 527 0 5 977 1946 225 56 51 chr12 51426493 51426521 -69831009 + Lx7 LINE L1 7230 7257 -439 5 977 4553 47 3 10 chr12 51426521 51427099 -69830431 + L1Md_F2 LINE L1 6009 6582 0 5 977 1946 225 56 51 chr12 51427099 51427529 -69830001 + Lx7 LINE L1 7258 7693 -3 5 977 1689 162 180 8 chr12 51427572 51427927 -69829603 + MTC LTR MaLR 1 416 -5 5 977 337 298 26 8 chr12 51428193 51428338 -69829192 + L1ME1 LINE L1 4199 4349 -1794 5 977 1180 306 31 6 chr12 51428494 51428845 -69828685 + MTE2b LTR MaLR 16 375 -4 5 977 1259 209 19 92 chr12 51429028 51429397 -69828133 + Lx9 LINE L1 7302 7643 -1 5 977 500 302 36 7 chr12 51429449 51429589 -69827941 + RSINE1 SINE B4 1 144 -21 5 977 497 285 70 25 chr12 51429617 51429759 -69827771 + L1ME1 LINE L1 4734 4884 -1259 5 977 7262 43 5 25 chr12 51429759 51430688 -69826842 + L1Md_F2 LINE L1 5672 6582 0 5 977 497 285 70 25 chr12 51430688 51430786 -69826744 + L1ME1 LINE L1 4885 4985 -1158 5 977 797 247 35 5 chr12 51430788 51430987 -69826543 + Lx7 LINE L1 7118 7322 -374 5 977 306 106 0 0 chr12 51431020 51431067 -69826463 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 977 681 47 0 0 chr12 51431117 51431202 -69826328 + (GA)n Simple_repeat Simple_repeat 1 85 0 5 977 346 245 29 29 chr12 51431296 51431359 -69826171 + L1ME1 LINE L1 4984 5048 -1095 5 977 1260 268 64 0 chr12 51431359 51431751 -69825779 + MTD LTR MaLR 1 417 -2 5 977 346 245 29 29 chr12 51431751 51431792 -69825738 + L1ME1 LINE L1 5049 5088 -1055 5 977 556 345 0 0 chr12 51431811 51431956 -69825574 - ID_B1 SINE B4 -2 222 78 5 977 584 258 57 43 chr12 51431956 51432301 -69825229 + L1ME1 LINE L1 5080 5418 -882 5 977 988 163 63 0 chr12 51432311 51432501 -69825029 + L1_Mur2 LINE L1 5094 5295 -582 5 977 459 179 59 7 chr12 51432508 51432643 -69824887 + Lx9 LINE L1 7503 7644 0 5 977 485 306 65 27 chr12 51432670 51432865 -69824665 + L1ME1 LINE L1 5614 5819 -360 5 977 2792 56 40 0 chr12 51432865 51433238 -69824292 + RLTR10 LTR ERVK 1 388 -2 5 977 485 306 65 27 chr12 51433238 51433304 -69824226 + L1ME1 LINE L1 5820 5885 -294 5 977 571 282 7 21 chr12 51434933 51435078 -69822452 + B3A SINE B2 3 145 -53 5 977 727 322 68 19 chr12 51435682 51435948 -69821582 + B4A SINE B4 1 279 -13 5 977 273 345 18 0 chr12 51435969 51436079 -69821451 + (CA)n Simple_repeat Simple_repeat 1 112 0 5 977 270 253 13 0 chr12 51436754 51436829 -69820701 + L1MEf LINE L1 110 185 -7149 5 977 391 300 102 29 chr12 51437207 51437482 -69820048 + L1MEf LINE L1 2649 2943 -4159 5 977 205 118 39 0 chr12 51438011 51438062 -69819468 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 977 613 271 77 4 chr12 51438198 51438377 -69819153 - ID_B1 SINE B4 -90 202 5 5 977 31 44 0 0 chr12 51438703 51438748 -69818782 + AT_rich Low_complexity Low_complexity 1 45 0 5 977 369 0 0 0 chr12 51439798 51439839 -69817691 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 977 1626 80 0 0 chr12 51439884 51440097 -69817433 - L1_Mus4 LINE L1 -632 6004 5792 5 977 1870 93 20 36 chr12 51440097 51440316 -69817214 + L1_Mus4 LINE L1 6340 6559 -77 5 977 3321 32 12 10 chr12 51440316 51440726 -69816804 - IAPLTR2a LTR ERVK 0 411 1 5 977 1870 93 20 36 chr12 51440726 51440808 -69816722 + L1_Mus4 LINE L1 6560 6636 0 5 977 5986 35 3 3 chr12 51440972 51441690 -69815840 + L1Md_F3 LINE L1 5867 6584 0 5 977 704 203 101 11 chr12 51441864 51442053 -69815477 + B3 SINE B2 5 210 -6 5 977 305 332 24 85 chr12 51445683 51445894 -69811636 + B3A SINE B2 1 198 0 5 977 315 295 13 0 chr12 51446872 51446950 -69810580 - B4 SINE B4 -180 112 34 5 977 434 312 25 45 chr12 51447071 51447269 -69810261 + B3A SINE B2 1 194 -4 5 977 1182 152 56 0 chr12 51448024 51448129 -69809401 + RLTR20A LTR ERVK 333 439 -102 6 977 231 125 0 0 chr12 51448129 51448169 -69809361 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 977 1182 152 56 0 chr12 51448169 51448260 -69809270 + RLTR20A LTR ERVK 440 538 -3 6 977 950 239 91 0 chr12 51449230 51449473 -69808057 - Lx7 LINE L1 -1793 5903 5639 6 977 3546 308 51 38 chr12 51449478 51450931 -69806599 + Lx7 LINE L1 5896 7367 -329 6 977 2702 45 26 12 chr12 51451634 51451975 -69805555 + ORR1A1 LTR MaLR 1 346 0 6 977 218 312 63 86 chr12 51454445 51454620 -69802910 + L3 LINE CR1 3525 3695 -794 6 977 342 141 11 34 chr12 51454717 51454805 -69802725 + Lx4B LINE L1 6969 7054 -4 6 977 195 129 0 0 chr12 51454948 51454979 -69802551 + (CAT)n Simple_repeat Simple_repeat 2 32 0 6 977 252 295 128 0 chr12 51454998 51455076 -69802454 - B1F1 SINE Alu -52 97 10 6 977 8730 3 0 0 chr12 51455356 51456351 -69801179 - L1Md_A LINE L1 0 6582 5616 6 977 270 0 0 0 chr12 51457020 51457050 -69800480 + (A)n Simple_repeat Simple_repeat 1 30 0 6 977 180 0 0 0 chr12 51458779 51458799 -69798731 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 6 977 769 285 9 14 chr12 51459048 51459258 -69798272 - B3 SINE B2 0 216 8 6 977 2612 190 49 32 chr12 51459374 51459966 -69797564 + RMER6C LTR ERVK 1 602 -88 6 977 504 316 33 7 chr12 51460975 51461128 -69796402 - B4A SINE B4 -20 272 116 6 977 208 260 26 0 chr12 51461279 51461356 -69796174 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 6 977 471 35 0 0 chr12 51461909 51461966 -69795564 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 977 230 218 0 35 chr12 51462036 51462093 -69795437 + CT-rich Low_complexity Low_complexity 2 56 0 6 977 199 254 78 78 chr12 51462634 51462664 -69794866 - MIRc SINE MIR -59 209 181 6 977 1374 201 135 44 chr12 51462664 51463050 -69794480 - MTC LTR MaLR 0 421 1 6 977 199 254 78 78 chr12 51463050 51463096 -69794434 - MIRc SINE MIR -88 180 133 6 977 287 284 104 54 chr12 51464628 51464803 -69792727 + MIR SINE MIR 26 194 -74 6 977 24 32 0 0 chr12 51468600 51468631 -69788899 + AT_rich Low_complexity Low_complexity 1 31 0 6 977 251 28 28 0 chr12 51468891 51468927 -69788603 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 6 977 620 241 15 15 chr12 51469485 51469620 -69787910 - B1F SINE Alu -14 135 1 6 977 1086 88 0 0 chr12 51469744 51469892 -69787638 + B1_Mus1 SINE Alu 1 148 0 6 977 557 347 122 3 chr12 51473089 51473473 -69784057 - MLT1E2 LTR MaLR -52 575 146 6 977 1096 270 73 34 chr12 51473525 51473881 -69783649 - ORR1D2 LTR MaLR 0 370 1 6 977 4924 235 91 16 chr12 51473881 51475151 -69782379 - ORR1D2-int LTR MaLR 0 1370 5 6 977 503 250 79 54 chr12 51475154 51475357 -69782173 - ORR1D2 LTR MaLR 0 374 167 6 977 447 68 0 0 chr12 51475357 51475416 -69782114 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 6 977 301 278 0 151 chr12 51475416 51475522 -69782008 - ORR1D2 LTR MaLR -193 181 92 6 977 1992 181 19 19 chr12 51475522 51475899 -69781631 - RLTR30 LTR ERV1 0 379 3 6 977 366 284 17 60 chr12 51475899 51475988 -69781542 - ORR1D2 LTR MaLR -278 92 9 6 977 234 91 0 0 chr12 51476038 51476071 -69781459 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 977 978 69 0 0 chr12 51477145 51477276 -69780254 + (GGA)n Simple_repeat Simple_repeat 3 133 0 6 977 363 254 127 0 chr12 51478467 51478585 -69778945 + RMER15 LTR ERVL 427 559 -16 6 977 329 199 7 40 chr12 51478709 51478861 -69778669 + (TG)n Simple_repeat Simple_repeat 2 148 0 6 977 549 277 175 46 chr12 51479585 51480157 -69777373 + L1MC3 LINE L1 5186 5841 -1944 6 977 213 219 47 0 chr12 51480162 51480226 -69777304 + (TATG)n Simple_repeat Simple_repeat 2 68 0 6 977 801 179 112 0 chr12 51480569 51480748 -69776782 + Lx9 LINE L1 7268 7466 -178 6 977 366 91 0 0 chr12 51482797 51482852 -69774678 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 977 315 336 0 34 chr12 51482953 51483070 -69774460 - B4A SINE B4 -172 120 8 6 977 254 340 0 20 chr12 51483345 51483447 -69774083 - PB1D10 SINE Alu -15 102 3 6 977 1149 75 0 0 chr12 51483587 51483733 -69773797 + B1_Mm SINE Alu 1 146 -1 6 977 1007 119 107 6 chr12 51485805 51485974 -69771556 + B2_Mm2 SINE B2 3 188 -7 6 977 252 111 11 69 chr12 51487903 51487990 -69769540 + A-rich Low_complexity Low_complexity 2 83 0 6 977 246 196 43 0 chr12 51490014 51490060 -69767470 - B4A SINE B4 -72 220 173 6 977 229 333 54 54 chr12 51490060 51490125 -69767405 - PB1D9 SINE Alu -7 113 3 6 977 274 284 22 90 chr12 51490169 51490258 -69767272 - B4A SINE B4 -209 83 1 6 977 23 33 0 0 chr12 51490346 51490376 -69767154 + AT_rich Low_complexity Low_complexity 1 30 0 6 977 258 32 0 0 chr12 51495396 51495427 -69762103 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6 977 3549 244 88 41 chr12 51497656 51499266 -69758264 + L1_Mur3 LINE L1 869 2640 -3240 6 977 4281 79 38 2 chr12 51499266 51499848 -69757682 + L1_Mus2 LINE L1 5963 6565 -1 6 977 3549 226 77 44 chr12 51499848 51499960 -69757570 + L1_Mur3 LINE L1 2641 2736 -3144 6 977 402 103 25 13 chr12 51500000 51500079 -69757451 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 977 718 255 58 28 chr12 51500090 51500417 -69757113 + L1_Mur3 LINE L1 2760 3096 -2784 2 977 1119 214 28 3 chr12 51500422 51500708 -69756822 + L1_Mur3 LINE L1 3220 3512 -2368 2 977 3572 47 104 18 chr12 51500867 51501365 -69756165 + L1_Mus1 LINE L1 6026 6566 -1 3 977 21 0 0 0 chr12 51501859 51501880 -69755650 + AT_rich Low_complexity Low_complexity 1 21 0 4 977 292 330 56 9 chr12 51502620 51502727 -69754803 + PB1D10 SINE Alu 1 112 -5 5 977 24 0 0 0 chr12 51503560 51503584 -69753946 + AT_rich Low_complexity Low_complexity 1 24 0 6 977 33100 55 24 25 chr12 51503628 51508446 -69749084 + L1Md_F LINE L1 99 4929 -954 7 977 231 183 46 77 chr12 51508446 51508511 -69749019 - RMER20A LTR ERVK -268 248 186 8 977 33100 55 24 25 chr12 51508511 51509165 -69748365 + L1Md_F LINE L1 4930 5586 -297 7 977 8025 54 1 0 chr12 51509165 51510160 -69747370 + L1Md_T LINE L1 5587 6582 0 9 977 357 206 21 84 chr12 51510748 51510891 -69746639 + Lx7 LINE L1 5223 5356 -524 1 977 1552 222 129 5 chr12 51510891 51511294 -69746236 + Lx2B LINE L1 6525 6977 -23 1 978 1120 210 33 89 chr12 51511298 51511509 -69746021 + Lx7 LINE L1 5351 5556 -324 1 978 6759 52 25 6 chr12 51511509 51512384 -69745146 + L1Md_F3 LINE L1 5693 6584 0 1 978 1120 188 115 48 chr12 51512384 51512559 -69744971 + Lx7 LINE L1 5557 5737 -1959 1 978 398 260 45 13 chr12 51512664 51512820 -69744710 + Lx7 LINE L1 7536 7696 0 1 978 525 252 168 0 chr12 51513065 51513208 -69744322 - B3 SINE B2 0 216 50 1 978 513 0 0 0 chr12 51513618 51513675 -69743855 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 1 978 499 336 13 75 chr12 51513692 51513753 -69743777 - B3 SINE B2 -1 215 167 1 978 315 71 0 0 chr12 51513753 51513795 -69743735 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1 978 499 336 13 75 chr12 51513795 51513961 -69743569 - B3 SINE B2 -50 166 2 1 978 606 14 0 0 chr12 51514154 51514225 -69743305 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 1 978 184 267 22 0 chr12 51515205 51515250 -69742280 + L2b LINE L2 3251 3296 -79 1 978 626 0 14 0 chr12 51516324 51516398 -69741132 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 978 1502 62 16 0 chr12 51516790 51516982 -69740548 - B2_Mm2 SINE B2 0 195 1 2 978 405 116 0 0 chr12 51517026 51517095 -69740435 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 978 237 348 173 7 chr12 51517493 51517632 -69739898 - RSINE1 SINE B4 0 165 4 2 978 549 0 0 0 chr12 51518114 51518175 -69739355 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2 978 33 18 0 51 chr12 51519139 51519198 -69738332 + AT_rich Low_complexity Low_complexity 1 56 0 2 978 956 247 0 5 chr12 51521420 51521607 -69735923 + B3 SINE B2 6 191 -25 2 978 21 36 0 0 chr12 51521607 51521635 -69735895 + AT_rich Low_complexity Low_complexity 1 28 0 2 978 21 0 0 0 chr12 51521718 51521739 -69735791 + AT_rich Low_complexity Low_complexity 1 21 0 2 978 322 21 21 21 chr12 51522248 51522296 -69735234 + (CAAAA)n Simple_repeat Simple_repeat 5 52 0 2 978 265 250 16 0 chr12 51522696 51522760 -69734770 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 978 347 255 47 38 chr12 51522765 51522871 -69734659 - B4A SINE B4 -2 290 184 3 978 249 309 84 38 chr12 51522888 51522902 -69734628 - B3A SINE B2 -59 139 3 3 978 295 351 43 51 chr12 51522902 51523019 -69734511 - B4A SINE B4 -174 118 3 3 978 243 61 0 0 chr12 51523054 51523087 -69734443 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 3 978 902 191 136 0 chr12 51523555 51523754 -69733776 + URR1A DNA MER1_type 1 226 0 3 978 555 185 139 0 chr12 51523772 51523923 -69733607 - Lx5 LINE L1 -11 7039 6868 3 978 372 351 64 64 chr12 51523943 51523955 -69733575 - L1ME2 LINE L1 0 6164 6153 3 978 552 39 51 0 chr12 51523955 51524033 -69733497 - L1Md_A LINE L1 0 6582 6501 3 978 372 351 64 64 chr12 51524033 51524296 -69733234 - L1ME2 LINE L1 -12 6152 5883 3 978 259 354 26 17 chr12 51524296 51524411 -69733119 - PB1 SINE Alu -8 119 4 3 978 372 351 64 64 chr12 51524411 51524478 -69733052 - L1ME2 LINE L1 -282 5882 5822 3 978 260 340 10 0 chr12 51524548 51524651 -69732879 + Lx9 LINE L1 7198 7301 -343 3 978 436 252 0 75 chr12 51524740 51524860 -69732670 + B1_Mur2 SINE Alu 34 144 -5 4 978 31 0 0 0 chr12 51525026 51525057 -69732473 + AT_rich Low_complexity Low_complexity 1 31 0 4 978 22 70 0 0 chr12 51525301 51525344 -69732186 + AT_rich Low_complexity Low_complexity 1 43 0 4 978 222 352 112 0 chr12 51526975 51527100 -69730430 + MIRb SINE MIR 38 176 -92 4 978 588 29 0 0 chr12 51527184 51527254 -69730276 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 978 1405 341 50 46 chr12 51527437 51528111 -69729419 + MTE-int LTR MaLR 862 1538 -42 4 978 392 317 71 31 chr12 51529333 51529460 -69728070 + ID_B1 SINE B4 80 211 -13 4 978 481 244 141 10 chr12 51529529 51529728 -69727802 + Lx8 LINE L1 7239 7463 -10 4 978 24 53 0 0 chr12 51531130 51531168 -69726362 + AT_rich Low_complexity Low_complexity 1 38 0 4 978 435 38 0 0 chr12 51533974 51534027 -69723503 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 978 686 215 14 0 chr12 51534460 51534604 -69722926 - B1_Mus2 SINE Alu -1 146 1 5 978 744 272 48 5 chr12 51534696 51534903 -69722627 - B3 SINE B2 0 216 1 5 978 946 204 107 17 chr12 51534925 51534992 -69722538 - Lx9 LINE L1 -4 7640 7567 5 978 360 0 0 0 chr12 51534992 51535032 -69722498 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 978 946 204 107 17 chr12 51535032 51535263 -69722267 - Lx9 LINE L1 -78 7566 7315 5 978 312 158 0 0 chr12 51536411 51536468 -69721062 + GA-rich Low_complexity Low_complexity 2 58 0 5 978 404 91 15 0 chr12 51536786 51536852 -69720678 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 978 257 436 0 0 chr12 51537089 51537254 -69720276 - Lx8 LINE L1 -287 7186 7022 5 978 552 282 40 18 chr12 51537278 51537505 -69720025 - Lx8 LINE L1 -604 6869 6638 5 978 2025 308 38 33 chr12 51538674 51539554 -69717976 - Lx8 LINE L1 -252 7221 6338 5 978 759 100 0 0 chr12 51539860 51539970 -69717560 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 5 978 303 281 0 0 chr12 51540292 51540374 -69717156 - ID4_ SINE ID -1 82 1 5 978 21 0 0 0 chr12 51541073 51541094 -69716436 + AT_rich Low_complexity Low_complexity 1 21 0 6 978 285 98 0 0 chr12 51541127 51541168 -69716362 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 6 978 405 299 70 16 chr12 51541209 51541338 -69716192 - ID_B1 SINE B4 -39 185 50 6 978 1607 58 5 0 chr12 51541340 51541547 -69715983 - L1Md_T LINE L1 0 6582 6375 6 978 4838 174 9 76 chr12 51541674 51541959 -69715571 + Lx5 LINE L1 5523 5812 -1238 6 978 1068 58 73 0 chr12 51541959 51542096 -69715434 + B1_Mus2 SINE Alu 1 147 0 6 978 4838 234 40 47 chr12 51542096 51542419 -69715111 + Lx5 LINE L1 5813 6122 -928 6 978 1289 73 0 6 chr12 51542419 51542598 -69714932 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 6 978 4838 234 40 47 chr12 51542598 51543358 -69714172 + Lx5 LINE L1 6123 6890 -160 6 978 5144 198 61 38 chr12 51543573 51545836 -69711694 + L1_Mur3 LINE L1 301 2608 -3272 6 978 847 184 5 24 chr12 51545821 51546033 -69711497 + L1_Mur3 LINE L1 3713 3920 -1960 6 978 2830 184 36 38 chr12 51546111 51546688 -69710842 + RLTR25A LTR ERVK 2 577 -526 6 978 537 179 7 97 chr12 51546745 51546900 -69710630 + L1_Mur3 LINE L1 4568 4708 -1172 6 978 257 306 109 22 chr12 51547081 51547218 -69710312 - MER3 DNA MER1_type -60 149 1 6 978 748 340 70 4 chr12 51547611 51547883 -69709647 + B4A SINE B4 1 290 -2 7 978 21 0 0 0 chr12 51548062 51548083 -69709447 + AT_rich Low_complexity Low_complexity 1 21 0 7 978 258 81 0 0 chr12 51548395 51548432 -69709098 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 978 1252 174 31 46 chr12 51549611 51549870 -69707660 - ORR1B1 LTR MaLR -8 386 132 7 978 243 0 0 0 chr12 51550721 51550748 -69706782 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 978 219 343 0 0 chr12 51551105 51551172 -69706358 + CT-rich Low_complexity Low_complexity 2 68 0 7 978 336 318 142 84 chr12 51551419 51551834 -69705696 + MLT1D LTR MaLR 52 490 -15 7 978 246 227 15 0 chr12 51551846 51551912 -69705618 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 978 318 134 0 0 chr12 51551931 51551998 -69705532 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 978 312 27 0 0 chr12 51555591 51555628 -69701902 + (CAA)n Simple_repeat Simple_repeat 2 38 0 7 978 240 35 0 0 chr12 51556183 51556212 -69701318 + (T)n Simple_repeat Simple_repeat 1 29 0 7 978 3784 33 7 2 chr12 51557109 51557561 -69699969 + L1Md_F3 LINE L1 6117 6570 -14 8 978 373 293 63 79 chr12 51558439 51558628 -69698902 + B3A SINE B2 26 211 -5 8 978 399 21 0 0 chr12 51558796 51558844 -69698686 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 8 978 462 304 39 52 chr12 51558871 51559024 -69698506 - RSINE1 SINE B4 0 165 15 8 978 414 57 0 0 chr12 51559232 51559285 -69698245 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 978 7140 87 13 2 chr12 51559403 51561019 -69696511 - L1_Mus1 LINE L1 0 6654 4936 8 978 329 294 67 155 chr12 51561713 51561906 -69695624 + B4A SINE B4 117 292 0 8 978 224 167 21 0 chr12 51561912 51561960 -69695570 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 8 978 458 250 0 9 chr12 51562356 51562465 -69695065 + Lx9 LINE L1 6734 6841 -803 8 978 2186 80 85 3 chr12 51562465 51562793 -69694737 + IAPEY2_LTR LTR ERVK 1 355 -2 8 978 7310 127 25 9 chr12 51562795 51564018 -69693512 + IAPEY3-int LTR ERVK 1 1242 -6438 8 978 4149 113 9 19 chr12 51564013 51564682 -69692848 + IAPEy-int LTR ERVK 6852 7513 0 9 978 2013 131 19 3 chr12 51564692 51565013 -69692517 + IAPEY2_LTR LTR ERVK 32 357 0 9 978 1248 289 93 54 chr12 51565014 51565775 -69691755 + Lx9 LINE L1 6837 7627 -17 8 978 1884 268 26 12 chr12 51565791 51566297 -69691233 + Lx6 LINE L1 6937 7449 -11 9 978 340 224 115 26 chr12 51566318 51566474 -69691056 - Lx8 LINE L1 -4 7469 7300 9 978 245 102 0 39 chr12 51566566 51566617 -69690913 + (TTTTC)n Simple_repeat Simple_repeat 3 51 0 9 978 7072 61 22 1 chr12 51566619 51567872 -69689658 - L1_Mus2 LINE L1 0 6566 5293 9 978 235 276 73 45 chr12 51567874 51567984 -69689546 - Lx8 LINE L1 -488 6985 6873 9 978 227 152 0 21 chr12 51568147 51568194 -69689336 + CT-rich Low_complexity Low_complexity 3 48 0 9 978 466 45 0 0 chr12 51568458 51568525 -69689005 - L1Md_F2 LINE L1 -4 6578 6512 9 978 437 184 20 0 chr12 51568552 51568650 -69688880 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 9 978 1236 243 123 11 chr12 51570465 51570839 -69686691 + MTD LTR MaLR 4 419 0 9 978 27 73 0 0 chr12 51571563 51571618 -69685912 + AT_rich Low_complexity Low_complexity 1 55 0 9 978 233 111 0 0 chr12 51573314 51573359 -69684171 + L1_Mus4 LINE L1 6479 6523 -113 1 978 359 330 68 11 chr12 51573365 51573524 -69684006 - L1MB7 LINE L1 -337 5847 5678 1 978 189 0 0 0 chr12 51573524 51573545 -69683985 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 978 359 330 68 11 chr12 51573545 51573575 -69683955 - L1MB7 LINE L1 -507 5677 5647 1 978 495 312 42 8 chr12 51573599 51573864 -69683666 - L1MB7 LINE L1 -596 5588 5315 1 978 2929 200 115 30 chr12 51575067 51575813 -69681717 + RLTR40 LTR ERVK 1 810 -7 1 978 290 305 32 0 chr12 51577276 51577371 -69680159 - MLT2B1 LTR ERVL -298 222 125 1 978 300 200 0 0 chr12 51577439 51577504 -69680026 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 978 205 119 0 45 chr12 51577512 51577556 -69679974 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 1 978 463 303 73 42 chr12 51577780 51578138 -69679392 + L1MD3 LINE L1 7314 7682 -313 1 978 225 223 175 18 chr12 51578176 51578290 -69679240 + L1MD3 LINE L1 7666 7797 -198 1 978 477 287 96 17 chr12 51579744 51579921 -69677609 - B3 SINE B2 -21 195 5 1 978 212 130 0 100 chr12 51579972 51580032 -69677498 + T-rich Low_complexity Low_complexity 1 54 0 1 978 798 232 112 62 chr12 51580047 51580351 -69677179 + Lx7 LINE L1 7378 7696 0 1 978 224 232 18 0 chr12 51581155 51581211 -69676319 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 978 312 27 0 0 chr12 51582286 51582323 -69675207 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 978 234 271 70 40 chr12 51582399 51582499 -69675031 + Charlie5 DNA MER1_type 5 107 -2517 1 978 22 56 0 0 chr12 51582702 51582738 -69674792 + AT_rich Low_complexity Low_complexity 1 36 0 1 978 30 0 0 0 chr12 51583010 51583040 -69674490 + AT_rich Low_complexity Low_complexity 1 30 0 1 978 22 0 0 0 chr12 51584315 51584337 -69673193 + AT_rich Low_complexity Low_complexity 1 22 0 1 978 363 209 15 0 chr12 51584491 51584558 -69672972 - B1F SINE Alu -50 99 32 1 978 239 311 81 0 chr12 51585145 51585219 -69672311 - B4A SINE B4 -10 282 203 1 978 333 352 16 16 chr12 51585244 51585371 -69672159 - B4A SINE B4 -161 131 5 1 978 273 57 0 0 chr12 51585388 51585423 -69672107 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 978 244 348 127 26 chr12 51585798 51585987 -69671543 - MIR SINE MIR -46 216 9 1 978 3806 132 105 7 chr12 51587003 51587690 -69669840 - RMER6A LTR ERVK -2 754 1 1 978 23 33 0 0 chr12 51588042 51588072 -69669458 + AT_rich Low_complexity Low_complexity 1 30 0 1 978 209 241 17 0 chr12 51588462 51588520 -69669010 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 978 940 200 294 13 chr12 51588582 51588897 -69668633 - Lx6 LINE L1 -615 6845 6443 1 978 1575 247 60 12 chr12 51588898 51589316 -69668214 + Lx6 LINE L1 6847 7284 -176 1 978 346 311 73 8 chr12 51590612 51590735 -69666795 - B1F SINE Alu -6 143 13 1 978 233 355 0 45 chr12 51591743 51591855 -69665675 + B1F SINE Alu 11 117 -32 1 978 568 287 56 23 chr12 51592500 51592793 -69664737 - L1MB8 LINE L1 -269 5909 5604 1 978 21 36 0 0 chr12 51592921 51592949 -69664581 + AT_rich Low_complexity Low_complexity 1 28 0 1 978 24 0 0 0 chr12 51593112 51593136 -69664394 + AT_rich Low_complexity Low_complexity 1 24 0 1 978 351 0 0 0 chr12 51593294 51593333 -69664197 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 978 417 39 0 0 chr12 51593337 51593388 -69664142 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 978 381 109 0 0 chr12 51593436 51593500 -69664030 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 1 978 726 251 94 136 chr12 51593595 51593867 -69663663 - MTD LTR MaLR -145 276 16 1 978 231 36 0 0 chr12 51593867 51593895 -69663635 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 1 978 672 251 94 136 chr12 51593895 51593908 -69663622 - MTD LTR MaLR -406 15 3 1 978 2083 275 49 79 chr12 51593910 51595010 -69662520 - MTD-int LTR MaLR 0 1098 1 1 978 1089 233 187 14 chr12 51595012 51595360 -69662170 - MTD LTR MaLR 0 419 12 1 978 219 320 0 0 chr12 51595360 51595463 -69662067 + A-rich Low_complexity Low_complexity 1 103 0 1 978 393 58 0 0 chr12 51595850 51595902 -69661628 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 978 21 0 0 0 chr12 51595975 51595996 -69661534 + AT_rich Low_complexity Low_complexity 1 21 0 1 978 564 15 0 0 chr12 51596373 51596438 -69661092 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 978 504 250 11 27 chr12 51596438 51596623 -69660907 + L1MA8 LINE L1 5918 6099 -192 1 978 180 207 48 65 chr12 51596915 51596977 -69660553 + MER5A DNA MER1_type 1 61 -128 1 978 1151 75 0 7 chr12 51597671 51597819 -69659711 - B1_Mus2 SINE Alu 0 147 1 1 978 935 338 25 29 chr12 51598428 51598742 -69658788 - ORR1D2 LTR MaLR -49 321 9 1 978 554 136 168 7 chr12 51599001 51599156 -69658374 + Lx2B LINE L1 5945 6124 -876 1 978 680 258 103 8 chr12 51599156 51599655 -69657875 - L1M2 LINE L1 -839 5464 4923 1 978 468 0 0 0 chr12 51599760 51599812 -69657718 + (A)n Simple_repeat Simple_repeat 1 52 0 1 978 868 279 45 112 chr12 51600096 51600335 -69657195 + MTE2a LTR MaLR 7 209 -170 1 978 675 0 0 0 chr12 51600335 51600410 -69657120 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 978 868 279 45 112 chr12 51600410 51600570 -69656960 + MTE2a LTR MaLR 210 379 0 1 978 784 290 69 14 chr12 51602825 51603042 -69654488 + B4A SINE B4 2 230 -62 1 978 22 70 0 0 chr12 51603626 51603669 -69653861 + AT_rich Low_complexity Low_complexity 1 43 0 1 978 449 0 36 0 chr12 51604824 51604880 -69652650 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 1 978 333 0 0 0 chr12 51607072 51607109 -69650421 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 978 194 311 0 76 chr12 51607822 51607888 -69649642 - L2b LINE L2 -52 3323 3263 1 978 1472 81 0 83 chr12 51608619 51608849 -69648681 - L1_Mus2 LINE L1 0 6566 6356 1 978 2038 75 0 3 chr12 51608850 51609132 -69648398 + L1_Mus2 LINE L1 6057 6337 -229 1 978 442 289 31 15 chr12 51610203 51610333 -69647197 - B1F SINE Alu -2 147 16 1 978 821 144 6 0 chr12 51610356 51610516 -69647014 + (TC)n Simple_repeat Simple_repeat 2 162 0 1 978 369 0 0 0 chr12 51610516 51610557 -69646973 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 978 354 80 0 0 chr12 51610588 51610638 -69646892 + (TCC)n Simple_repeat Simple_repeat 3 52 0 1 978 836 139 0 7 chr12 51610684 51610829 -69646701 + (TTC)n Simple_repeat Simple_repeat 3 146 0 1 978 186 43 0 0 chr12 51610921 51610944 -69646586 + (TCTCTG)n Simple_repeat Simple_repeat 6 28 0 1 978 28 48 0 0 chr12 51611096 51611138 -69646392 + AT_rich Low_complexity Low_complexity 1 42 0 1 978 316 325 25 8 chr12 51611366 51611487 -69646043 - ID_B1 SINE B4 0 224 102 1 978 777 355 14 11 chr12 51613772 51614054 -69643476 + B4A SINE B4 2 284 -8 1 978 233 163 0 20 chr12 51614069 51614119 -69643411 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 978 375 297 0 67 chr12 51614159 51614278 -69643252 + MTE2a LTR MaLR 5 115 -264 1 978 270 170 75 0 chr12 51614336 51614389 -69643141 + MTE2a LTR MaLR 285 341 -38 1 978 374 316 161 29 chr12 51615436 51615726 -69641804 + MER63D DNA AcHobo 517 981 -80 1 978 194 33 67 0 chr12 51616045 51616075 -69641455 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 978 1106 309 33 17 chr12 51616233 51616807 -69640723 + Ricksha DNA MuDR 1471 2053 -1193 1 978 1832 303 133 13 chr12 51617472 51618460 -69639070 + Lx8 LINE L1 6222 7327 -146 1 978 310 275 108 18 chr12 51618462 51618573 -69638957 + HAL1-3A_ME LINE L1 1969 2089 -769 1 978 303 49 0 0 chr12 51619209 51619250 -69638280 + (A)n Simple_repeat Simple_repeat 1 41 0 1 978 22 35 0 0 chr12 51620096 51620125 -69637405 + AT_rich Low_complexity Low_complexity 1 29 0 1 978 450 319 11 29 chr12 51620512 51620686 -69636844 + MTD LTR MaLR 11 181 -238 1 978 1288 293 23 50 chr12 51620597 51621075 -69636455 + MT2A LTR ERVL 64 528 -5 1 978 21 0 0 0 chr12 51621088 51621109 -69636421 + AT_rich Low_complexity Low_complexity 1 21 0 1 978 28 0 0 0 chr12 51621512 51621540 -69635990 + AT_rich Low_complexity Low_complexity 1 28 0 1 978 223 340 18 0 chr12 51621780 51621870 -69635660 - L2c LINE L2 -66 3321 3204 1 978 450 319 0 23 chr12 51623839 51624012 -69633518 - Ricksha_c DNA MuDR -1423 625 457 1 978 351 277 110 26 chr12 51624967 51625288 -69632242 - MLT1A1 LTR MaLR -6 402 1 1 978 897 134 5 113 chr12 51625613 51625798 -69631732 + ORR1B1 LTR MaLR 1 165 -229 1 978 603 146 10 0 chr12 51625792 51625895 -69631635 + ORR1B1 LTR MaLR 291 394 0 1 978 317 149 26 26 chr12 51627511 51627587 -69629943 - L1MA5 LINE L1 -6 6294 6219 1 978 198 354 116 42 chr12 51628772 51628961 -69628569 - L3 LINE CR1 -891 3598 3396 1 978 197 284 14 29 chr12 51629429 51629498 -69628032 - L3 LINE CR1 -1626 2863 2796 1 978 1000 110 14 14 chr12 51630089 51630236 -69627294 + B1_Mus1 SINE Alu 2 148 0 1 978 25 31 0 0 chr12 51630382 51630414 -69627116 + AT_rich Low_complexity Low_complexity 1 32 0 1 978 249 373 92 0 chr12 51630432 51630574 -69626956 - Tigger1 DNA MER2_type -1 2417 2263 1 978 1467 302 106 12 chr12 51631013 51631666 -69625864 - Lx8 LINE L1 -179 7294 6581 1 978 315 321 22 56 chr12 51631673 51631851 -69625679 + Lx8 LINE L1 6401 6572 -901 1 978 21 57 0 0 chr12 51634560 51634595 -69622935 + AT_rich Low_complexity Low_complexity 1 35 0 1 978 1449 53 0 5 chr12 51634605 51634793 -69622737 - L1_Mus1 LINE L1 0 6567 6381 1 978 27 29 0 0 chr12 51634808 51634842 -69622688 + AT_rich Low_complexity Low_complexity 1 34 0 1 978 21 36 0 0 chr12 51634962 51634990 -69622540 + AT_rich Low_complexity Low_complexity 1 28 0 1 978 23 33 0 0 chr12 51635835 51635865 -69621665 + AT_rich Low_complexity Low_complexity 1 30 0 1 978 204 40 0 0 chr12 51636067 51636092 -69621438 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 978 637 266 136 0 chr12 51636248 51636425 -69621105 + B3 SINE B2 5 205 -11 1 978 432 0 0 0 chr12 51636460 51636508 -69621022 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 978 331 165 12 12 chr12 51636784 51636870 -69620660 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 978 449 285 121 42 chr12 51637939 51638104 -69619426 - L2 LINE L2 -1054 2365 2188 1 978 448 281 99 0 chr12 51638230 51638401 -69619129 + Lx8 LINE L1 6578 6765 -708 1 978 410 324 47 0 chr12 51640688 51640836 -69616694 - MER82 DNA MER2_type -6 647 493 1 978 403 265 162 7 chr12 51641052 51641200 -69616330 - MER82 DNA MER2_type -458 195 25 1 978 449 141 12 0 chr12 51641392 51641477 -69616053 + GA-rich Low_complexity Low_complexity 2 87 0 1 978 231 182 45 0 chr12 51641613 51641679 -69615851 + Lx5 LINE L1 6981 7049 -1 1 979 295 202 56 25 chr12 51642390 51642552 -69614978 + GA-rich Low_complexity Low_complexity 2 168 0 2 979 262 250 0 0 chr12 51642560 51642612 -69614918 + polypurine Low_complexity Low_complexity 3 54 0 2 979 833 298 69 76 chr12 51643988 51644409 -69613121 + MTD LTR MaLR 1 418 -1 2 979 465 323 32 0 chr12 51645354 51645512 -69612018 - MER5A1 DNA MER1_type -2 164 2 2 979 304 335 45 72 chr12 51645767 51645989 -69611541 - MIR SINE MIR -26 236 21 2 979 467 190 93 23 chr12 51647768 51647897 -69609633 - MER45C DNA Tip100 -29 924 787 2 979 201 132 0 0 chr12 51648838 51648876 -69608654 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2 979 281 169 17 0 chr12 51649410 51649469 -69608061 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 979 23 33 0 0 chr12 51649486 51649516 -69608014 + AT_rich Low_complexity Low_complexity 1 30 0 2 979 214 293 73 35 chr12 51649524 51649617 -69607913 + B1F SINE Alu 3 99 -18 2 979 332 278 182 35 chr12 51649693 51649891 -69607639 + Lx8 LINE L1 7247 7473 0 2 979 21 36 0 0 chr12 51651790 51651818 -69605712 + AT_rich Low_complexity Low_complexity 1 28 0 2 979 433 281 113 27 chr12 51651830 51651980 -69605550 - RSINE1 SINE B4 0 165 3 2 979 1054 288 44 4 chr12 51652091 51652363 -69605167 - B4 SINE B4 -2 290 8 2 979 1728 233 50 32 chr12 51653173 51653576 -69603954 + MTD LTR MaLR 1 410 -9 2 979 382 215 126 91 chr12 51653726 51653869 -69603661 + B4 SINE B4 76 223 -69 2 979 894 78 0 0 chr12 51653755 51653871 -69603659 + B1_Mus1 SINE Alu 33 148 0 2 979 201 245 37 19 chr12 51654830 51654884 -69602646 - MIR SINE MIR -78 184 130 2 979 309 26 0 0 chr12 51655026 51655064 -69602466 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 2 979 218 145 62 46 chr12 51655153 51655218 -69602312 + C-rich Low_complexity Low_complexity 1 66 0 2 979 235 385 39 0 chr12 51656209 51656287 -69601243 + RSINE1 SINE B4 78 158 -7 2 979 226 262 0 15 chr12 51656291 51656357 -69601173 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 2 979 21 0 0 0 chr12 51656799 51656820 -69600710 + AT_rich Low_complexity Low_complexity 1 21 0 2 979 1945 115 0 11 chr12 51657364 51657645 -69599885 + ORR1A4 LTR MaLR 1 278 -51 2 979 1254 203 209 15 chr12 51657685 51658015 -69599515 - RMER10A LTR ERVL -46 396 3 2 979 367 306 18 27 chr12 51658088 51658199 -69599331 + ORR1A4 LTR MaLR 267 376 -3 2 979 315 49 0 0 chr12 51658445 51658486 -69599044 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 979 234 0 0 0 chr12 51659180 51659206 -69598324 + (T)n Simple_repeat Simple_repeat 1 26 0 2 979 249 308 128 10 chr12 51659821 51659930 -69597600 + MIR SINE MIR 18 125 -143 2 979 269 176 0 45 chr12 51660901 51660990 -69596540 + T-rich Low_complexity Low_complexity 1 85 0 2 979 690 218 0 52 chr12 51661268 51661423 -69596107 + B1_Mur1 SINE Alu 2 148 -1 2 979 235 279 33 65 chr12 51661991 51662083 -69595447 - PB1 SINE Alu -38 89 1 2 979 258 32 0 0 chr12 51662667 51662698 -69594832 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 979 243 0 0 0 chr12 51662962 51662989 -69594541 + (T)n Simple_repeat Simple_repeat 1 27 0 2 979 1142 95 0 0 chr12 51662989 51663137 -69594393 - B1_Mus1 SINE Alu 0 148 1 2 979 765 300 28 104 chr12 51663275 51663687 -69593843 - MTE2a LTR MaLR -24 395 3 2 979 924 202 81 20 chr12 51663696 51663893 -69593637 + B3 SINE B2 8 216 0 2 979 202 321 158 12 chr12 51664286 51664368 -69593162 + MER5A DNA MER1_type 13 106 -83 2 979 222 171 0 0 chr12 51664860 51664901 -69592629 + (CATA)n Simple_repeat Simple_repeat 2 42 0 2 979 238 286 33 63 chr12 51665368 51665531 -69591999 + MLT1H1 LTR MaLR 460 615 -9 2 979 210 143 0 0 chr12 51666757 51666792 -69590738 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 979 353 299 8 57 chr12 51666903 51667027 -69590503 - PB1 SINE Alu -3 124 7 2 979 24 32 0 0 chr12 51667180 51667211 -69590319 + AT_rich Low_complexity Low_complexity 1 31 0 2 979 734 184 50 0 chr12 51667767 51667908 -69589622 + B1_Mur4 SINE Alu 1 148 -2 2 979 1185 48 0 0 chr12 51668054 51668201 -69589329 - B1_Mus2 SINE Alu 0 147 1 2 979 469 258 18 173 chr12 51668466 51668691 -69588839 - B3A SINE B2 -5 193 4 2 979 256 169 139 25 chr12 51670281 51670360 -69587170 - MER46C DNA MER2_type -7 331 244 2 979 327 25 0 0 chr12 51670505 51670545 -69586985 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 979 492 18 0 0 chr12 51670545 51670601 -69586929 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 979 372 208 41 14 chr12 51671017 51671090 -69586440 + RSINE1 SINE B4 3 77 -88 2 979 513 0 0 0 chr12 51671090 51671147 -69586383 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 979 2087 278 86 14 chr12 51671286 51672067 -69585463 - Lx9 LINE L1 -227 7417 6581 2 979 446 185 0 107 chr12 51672831 51672952 -69584578 + PB1D10 SINE Alu 10 117 0 2 979 1108 61 0 64 chr12 51673146 51673303 -69584227 + B1_Mm SINE Alu 1 147 0 2 979 203 225 12 36 chr12 51673303 51673380 -69584150 + A-rich Low_complexity Low_complexity 9 83 0 2 979 23 0 0 0 chr12 51673380 51673403 -69584127 + AT_rich Low_complexity Low_complexity 1 23 0 2 979 306 50 0 0 chr12 51673501 51673541 -69583989 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 979 256 303 0 0 chr12 51673560 51673626 -69583904 - ID4_ SINE ID -16 67 2 2 979 493 285 24 8 chr12 51673650 51673774 -69583756 - B1F SINE Alu -6 143 18 2 979 747 218 81 20 chr12 51674661 51674858 -69582672 + B3 SINE B2 1 209 -7 2 979 354 348 84 54 chr12 51675332 51675499 -69582031 + MER5A DNA MER1_type 18 189 0 2 979 287 293 60 20 chr12 51675499 51675649 -69581881 - L1M5 LINE L1 -3566 2580 2425 2 979 802 253 66 81 chr12 51675981 51676377 -69581153 + MLT1B LTR MaLR 1 390 0 2 979 241 293 60 12 chr12 51676769 51676852 -69580678 + PB1D7 SINE Alu 27 113 -7 2 979 410 287 73 7 chr12 51676860 51677011 -69580519 + RSINE1 SINE B4 3 163 -2 2 979 4854 79 3 3 chr12 51677756 51678406 -69579124 - L1_Mus4 LINE L1 -7 6629 5980 2 979 229 334 158 51 chr12 51679740 51680152 -69577378 - L2a LINE L2 -103 3323 2853 2 979 447 271 77 24 chr12 51681174 51681461 -69576069 + L1M4c LINE L1 721 1022 -5362 2 979 381 265 61 58 chr12 51681468 51681623 -69575907 + L1M4c LINE L1 1121 1347 -5131 2 979 254 289 13 32 chr12 51681811 51681965 -69575565 + ORR1B1-int LTR MaLR 604 754 -755 2 979 1016 70 0 0 chr12 51681863 51681992 -69575538 + B1_Mus1 SINE Alu 7 135 -13 2 979 180 0 0 0 chr12 51681992 51682012 -69575518 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 979 3749 9 121 0 chr12 51682012 51682452 -69575078 + MT2_Mm LTR ERVL 1 493 0 2 979 45226 14 8 0 chr12 51682452 51687774 -69569756 + MERVL-int LTR ERVL 1 5360 -125 2 979 380 179 46 35 chr12 51687774 51687861 -69569669 + ORR1A3-int LTR MaLR 553 640 -1323 2 979 302 0 0 0 chr12 51687861 51687899 -69569631 + MERVL-int LTR ERVL 5448 5485 0 2 979 4461 10 0 0 chr12 51687899 51688391 -69569139 + MT2_Mm LTR ERVL 1 492 -1 2 979 207 0 0 0 chr12 51688391 51688414 -69569116 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 2 979 337 269 0 9 chr12 51688444 51688560 -69568970 + L1M4c LINE L1 1562 1676 -4708 2 979 2226 0 0 0 chr12 51688882 51689128 -69568402 - L1Md_T LINE L1 0 6582 6337 2 979 2955 79 5 19 chr12 51690031 51690444 -69567086 + MTB_Mm LTR MaLR 1 407 0 2 979 614 252 18 42 chr12 51690484 51690650 -69566880 + B3 SINE B2 55 216 0 2 979 721 113 0 0 chr12 51690975 51691081 -69566449 + B2_Mm2 SINE B2 2 107 -88 2 979 198 71 0 0 chr12 51691213 51691241 -69566289 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2 979 799 122 28 7 chr12 51691241 51691382 -69566148 - Lx LINE L1 -15 6639 6496 2 979 4226 139 1 7 chr12 51691382 51692077 -69565453 + Lx LINE L1 5764 6454 -200 2 979 238 200 0 0 chr12 51693874 51693929 -69563601 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 979 306 0 0 0 chr12 51695540 51695574 -69561956 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 979 207 0 0 0 chr12 51699457 51699480 -69558050 + (A)n Simple_repeat Simple_repeat 1 23 0 2 979 870 209 56 6 chr12 51700188 51700366 -69557164 + B3 SINE B2 2 188 -28 2 979 291 54 0 0 chr12 51700366 51700403 -69557127 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 979 322 272 0 0 chr12 51700406 51700487 -69557043 + Lx5 LINE L1 6754 6834 -216 2 979 276 304 235 25 chr12 51701404 51701566 -69555964 - B3A SINE B2 -2 196 1 2 979 24 0 0 0 chr12 51702003 51702027 -69555503 + AT_rich Low_complexity Low_complexity 1 24 0 2 979 911 245 9 46 chr12 51702149 51702367 -69555163 - B3 SINE B2 -6 210 1 2 979 4689 179 44 16 chr12 51702656 51703187 -69554343 + Lx5 LINE L1 4801 5361 -516 2 979 2733 136 7 22 chr12 51703187 51703647 -69553883 + Lx2B LINE L1 6547 6999 -1 2 979 5388 191 45 25 chr12 51703647 51704959 -69552571 + Lx5 LINE L1 5362 6693 -357 2 979 3003 59 31 0 chr12 51704959 51705347 -69552183 + MTB LTR MaLR 1 400 0 2 979 5388 232 261 28 chr12 51705347 51705632 -69551898 + Lx5 LINE L1 6694 7045 -5 2 979 495 231 261 39 chr12 51706217 51706451 -69551079 - LTR40a LTR ERVL -172 290 5 2 979 331 291 111 51 chr12 51706888 51707105 -69550425 + L1MB5 LINE L1 5356 5585 -593 2 979 945 182 25 97 chr12 51707109 51707346 -69550184 + URR1B DNA MER1_type 6 225 0 2 979 587 297 51 33 chr12 51707361 51707755 -69549775 + L1MB5 LINE L1 5607 6007 -167 2 979 618 250 55 59 chr12 51707814 51708069 -69549461 + Lx8 LINE L1 7189 7442 -31 2 979 355 355 8 16 chr12 51708808 51708931 -69548599 + ID_B1 SINE B4 94 215 -9 2 979 2526 71 0 0 chr12 51709006 51709345 -69548185 + L1_Mm LINE L1 5536 5874 -9 2 979 21307 43 0 0 chr12 51709348 51712112 -69545418 + L1Md_A LINE L1 2824 5586 -297 2 979 8755 19 0 0 chr12 51712113 51713108 -69544422 + L1Md_A LINE L1 5588 6582 0 2 979 5337 77 8 6 chr12 51713105 51713821 -69543709 + L1Md_F2 LINE L1 5862 6579 -3 2 979 279 287 16 0 chr12 51714227 51714319 -69543211 - PB1D10 SINE Alu -6 114 18 2 979 724 294 37 0 chr12 51714372 51714559 -69542971 - B3 SINE B2 -15 201 8 3 979 283 229 333 0 chr12 51716371 51716467 -69541063 + RSINE1 SINE B4 2 129 -36 3 979 342 0 0 0 chr12 51717334 51717372 -69540158 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 979 810 164 0 0 chr12 51717372 51717518 -69540012 + (CA)n Simple_repeat Simple_repeat 2 147 0 3 979 1351 56 22 0 chr12 51717934 51718112 -69539418 + B2_Mm2 SINE B2 13 194 -1 3 979 3327 46 2 0 chr12 51719255 51719650 -69537880 + MTA_Mm LTR MaLR 1 396 0 3 979 255 293 121 0 chr12 51719864 51719963 -69537567 + PB1D10 SINE Alu 2 112 -5 3 979 399 207 50 25 chr12 51719976 51720095 -69537435 - L1_Mur2 LINE L1 -2268 3609 3488 3 979 703 298 57 48 chr12 51720137 51720556 -69536974 + L1_Rod LINE L1 5159 5581 -266 3 979 21 57 0 0 chr12 51720686 51720721 -69536809 + AT_rich Low_complexity Low_complexity 1 35 0 3 979 334 301 41 83 chr12 51721144 51721176 -69536354 + RSINE1 SINE B4 22 51 -114 3 979 3739 94 77 7 chr12 51721176 51721722 -69535808 + MT2B2 LTR ERVL 1 584 0 3 979 334 301 41 83 chr12 51721722 51721834 -69535696 + RSINE1 SINE B4 52 160 -5 3 979 21 0 0 0 chr12 51723010 51723031 -69534499 + AT_rich Low_complexity Low_complexity 1 21 0 3 979 187 239 22 0 chr12 51723420 51723466 -69534064 + MIR SINE MIR 104 150 -112 3 979 243 176 0 0 chr12 51723747 51723798 -69533732 + A-rich Low_complexity Low_complexity 1 51 0 3 979 4362 14 2 12 chr12 51724227 51724725 -69532805 + MT2_Mm LTR ERVL 1 493 0 3 979 210 191 0 0 chr12 51724726 51724768 -69532762 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 979 318 87 0 0 chr12 51725949 51725995 -69531535 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 3 979 185 336 186 8 chr12 51726022 51726151 -69531379 + MIR SINE MIR 45 196 -66 3 979 387 0 0 0 chr12 51726825 51726868 -69530662 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 979 46 62 0 0 chr12 51727730 51727811 -69529719 + AT_rich Low_complexity Low_complexity 1 81 0 3 979 219 103 0 0 chr12 51728824 51728863 -69528667 + (A)n Simple_repeat Simple_repeat 1 39 0 3 979 486 0 0 0 chr12 51729298 51729352 -69528178 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 979 874 315 192 25 chr12 51729804 51730259 -69527271 + Lx8 LINE L1 6398 6949 -524 3 979 2172 121 12 0 chr12 51730259 51730582 -69526948 + ORR1A4 LTR MaLR 3 329 0 3 979 874 315 192 25 chr12 51730582 51730856 -69526674 + Lx8 LINE L1 6950 7249 -224 3 979 1170 262 63 30 chr12 51730862 51731228 -69526302 + Lx6 LINE L1 7082 7459 -1 3 979 245 287 139 6 chr12 51731243 51731401 -69526129 + Lx8 LINE L1 7256 7434 -39 3 979 318 304 86 82 chr12 51732014 51732294 -69525236 - MLT1D LTR MaLR -185 320 40 3 979 254 29 0 28 chr12 51732676 51732712 -69524818 + (ATG)n Simple_repeat Simple_repeat 2 36 0 3 979 661 277 63 73 chr12 51733003 51733194 -69524336 + B3A SINE B2 3 191 -7 3 979 536 318 40 0 chr12 51733746 51733919 -69523611 + B3A SINE B2 3 182 -16 3 979 514 183 17 0 chr12 51734691 51734806 -69522724 + (TA)n Simple_repeat Simple_repeat 2 118 0 3 979 248 336 44 22 chr12 51735052 51735189 -69522341 - LTR82A LTR ERVL -724 148 9 3 979 324 0 0 0 chr12 51735224 51735260 -69522270 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 979 214 303 124 36 chr12 51735341 51735478 -69522052 + MIRb SINE MIR 86 234 -34 3 979 614 318 0 13 chr12 51735930 51736083 -69521447 + B4 SINE B4 77 227 -65 3 979 477 331 54 0 chr12 51736084 51736232 -69521298 + RSINE1 SINE B4 3 158 -7 3 979 246 62 0 0 chr12 51736270 51736302 -69521228 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 979 237 315 8 61 chr12 51736999 51737131 -69520399 - Lx7 LINE L1 -621 7075 6951 3 979 624 269 67 62 chr12 51737263 51737473 -69520057 - B3 SINE B2 -4 212 2 3 979 512 281 44 15 chr12 51737521 51737658 -69519872 - B3A SINE B2 -38 160 20 3 979 761 248 71 0 chr12 51738080 51738278 -69519252 + B3 SINE B2 3 214 -2 3 979 499 266 24 62 chr12 51738477 51738643 -69518887 - ID_B1 SINE B4 -3 221 66 3 979 1940 181 129 21 chr12 51738709 51739175 -69518355 + RMER4B LTR ERVK 17 467 -118 3 979 2923 60 33 13 chr12 51739175 51739567 -69517963 + MTB LTR MaLR 1 400 0 3 979 1549 213 57 135 chr12 51739567 51739588 -69517942 + RMER4B LTR ERVK 453 466 0 3 979 1642 183 39 47 chr12 51740689 51741114 -69516416 - RMER17C LTR ERVK -459 430 1 3 979 234 0 0 0 chr12 51741372 51741398 -69516132 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 979 270 176 0 0 chr12 51741719 51741770 -69515760 + GA-rich Low_complexity Low_complexity 2 52 0 3 979 894 274 102 15 chr12 51741785 51742256 -69515274 + L1MA9 LINE L1 5796 6307 -5 3 979 322 326 55 57 chr12 51742433 51742719 -69514811 + B4A SINE B4 7 291 -1 3 979 279 0 0 0 chr12 51742723 51742754 -69514776 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 979 1185 169 71 16 chr12 51743176 51743428 -69514102 + Lx2A1 LINE L1 6732 6997 -11 3 979 207 194 0 0 chr12 51743545 51743581 -69513949 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 3 979 2180 183 3 8 chr12 51744908 51745294 -69512236 + MTC LTR MaLR 2 385 -36 3 979 21 36 0 0 chr12 51745545 51745573 -69511957 + AT_rich Low_complexity Low_complexity 1 28 0 3 979 432 0 0 0 chr12 51747145 51747193 -69510337 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 979 26 64 0 0 chr12 51749822 51749869 -69507661 + GC_rich Low_complexity Low_complexity 1 47 0 3 979 217 269 0 15 chr12 51749883 51749951 -69507579 + (CGG)n Simple_repeat Simple_repeat 3 69 0 3 979 213 132 0 0 chr12 51750123 51750161 -69507369 + (CGGG)n Simple_repeat Simple_repeat 2 39 0 3 979 185 0 0 39 chr12 51750242 51750268 -69507262 + (CGGGG)n Simple_repeat Simple_repeat 3 27 0 3 979 456 363 105 25 chr12 51751541 51752256 -69505274 - L2b LINE L2 -230 3145 2333 3 979 351 0 0 0 chr12 51752584 51752623 -69504907 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 979 774 113 0 0 chr12 51752623 51752764 -69504766 + (CA)n Simple_repeat Simple_repeat 1 142 0 3 979 240 232 80 124 chr12 51752804 51752917 -69504613 - PB1D7 SINE Alu -10 110 3 3 979 334 344 61 18 chr12 51752930 51753158 -69504372 + L3 LINE CR1 795 1032 -3457 3 979 1258 50 43 38 chr12 51753175 51753360 -69504170 - B2_Mm1t SINE B2 -7 186 1 3 979 318 138 0 0 chr12 51753896 51753954 -69503576 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 3 979 1741 192 122 8 chr12 51754061 51754439 -69503091 + MTC LTR MaLR 1 421 0 3 979 1308 180 127 42 chr12 51754502 51754861 -69502669 + MTD LTR MaLR 20 406 -13 3 979 1068 63 7 14 chr12 51754863 51755008 -69502522 + B1_Mm SINE Alu 3 146 -1 3 979 236 175 0 16 chr12 51755018 51755082 -69502448 + A-rich Low_complexity Low_complexity 2 64 0 3 979 29562 98 8 1 chr12 51755649 51760917 -69496613 - L1_Mus1 LINE L1 0 6567 1262 3 979 1878 231 71 45 chr12 51760913 51761759 -69495771 - L1_Mus1 LINE L1 -5503 1135 261 3 979 3677 166 102 78 chr12 51761775 51762655 -69494875 - RMER19B LTR ERVK 0 902 2 3 979 854 117 72 7 chr12 51763636 51763774 -69493756 - B1_Mus1 SINE Alu -1 147 1 3 979 1602 123 107 0 chr12 51764031 51764292 -69493238 - Lx2 LINE L1 -1 6996 6708 3 979 3856 136 33 16 chr12 51764292 51764748 -69492782 + Lx2 LINE L1 6000 6475 -522 3 979 351 0 0 0 chr12 51764748 51764787 -69492743 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 979 2689 69 0 6 chr12 51764789 51765139 -69492391 - L1Md_F2 LINE L1 -12 6570 6223 3 979 3856 136 33 16 chr12 51765139 51765382 -69492148 + Lx2 LINE L1 6476 6714 -283 3 979 26 50 0 0 chr12 51765517 51765557 -69491973 + AT_rich Low_complexity Low_complexity 1 40 0 3 979 198 0 0 0 chr12 51765565 51765587 -69491943 + (TA)n Simple_repeat Simple_repeat 1 22 0 3 979 3282 45 5 2 chr12 51765791 51766190 -69491340 + MTB LTR MaLR 1 400 0 3 979 21 0 0 0 chr12 51767143 51767164 -69490366 + AT_rich Low_complexity Low_complexity 1 21 0 3 979 270 0 0 0 chr12 51767248 51767278 -69490252 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 979 229 231 62 37 chr12 51768353 51768434 -69489096 - RMER15 LTR ERVL -444 131 49 3 979 254 238 48 0 chr12 51768445 51768529 -69489001 - L1M5 LINE L1 -239 5885 5798 3 979 243 0 0 0 chr12 51768898 51768925 -69488605 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 979 315 0 0 0 chr12 51768925 51768959 -69488571 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 979 240 210 62 0 chr12 51769081 51769162 -69488368 + L1MD LINE L1 2121 2206 -3940 3 979 21 0 0 0 chr12 51769199 51769220 -69488310 + AT_rich Low_complexity Low_complexity 1 21 0 3 979 373 297 120 33 chr12 51769610 51769786 -69487744 - L1MD LINE L1 -3451 2695 2491 3 979 3034 61 8 13 chr12 51769786 51770184 -69487346 - MTA_Mm LTR MaLR 0 396 1 3 979 373 297 120 33 chr12 51770184 51770432 -69487098 - L1MD LINE L1 -3656 2490 2234 3 979 468 353 45 59 chr12 51770480 51770700 -69486830 - B4 SINE B4 -11 281 65 3 979 353 301 68 23 chr12 51771096 51771273 -69486257 + L1MDa LINE L1 1033 1217 -5323 3 979 1159 283 71 17 chr12 51771525 51772161 -69485369 + L1MDa LINE L1 1570 2239 -4394 3 980 2799 258 16 18 chr12 51774236 51775178 -69482352 + L1_Mur3 LINE L1 4210 5149 -731 3 980 298 324 0 0 chr12 51775369 51775464 -69482066 + B1F SINE Alu 55 149 0 3 980 284 364 8 15 chr12 51775499 51775633 -69481897 - MLT1A1 LTR MaLR -8 400 268 3 980 198 0 0 0 chr12 51776860 51776882 -69480648 + (A)n Simple_repeat Simple_repeat 1 22 0 3 980 192 103 0 0 chr12 51777031 51777060 -69480470 + L4 LINE RTE 1704 1732 -297 3 980 244 374 7 71 chr12 51777223 51777364 -69480166 - LTR16E2 LTR ERVL -2 566 435 3 980 1032 242 136 18 chr12 51777728 51778060 -69479470 - ORR1D1 LTR MaLR -1 373 3 3 980 22 0 0 0 chr12 51778905 51778927 -69478603 + AT_rich Low_complexity Low_complexity 1 22 0 3 980 738 246 101 108 chr12 51780087 51780374 -69477156 - MTE2a LTR MaLR -14 365 81 4 980 819 224 17 70 chr12 51780404 51780634 -69476896 - RMER15 LTR ERVL -14 561 344 4 980 414 296 41 77 chr12 51781601 51781807 -69475723 - ORR1E LTR MaLR -171 213 3 4 980 483 224 6 29 chr12 51783543 51783718 -69473812 + (TATATG)n Simple_repeat Simple_repeat 4 174 0 4 980 316 289 167 34 chr12 51785161 51785873 -69471657 + L1MD LINE L1 4252 5058 -1088 4 980 2698 275 41 11 chr12 51785897 51786702 -69470828 - Lx8 LINE L1 0 7473 6645 4 980 33569 45 0 4 chr12 51786927 51792065 -69465465 + L1Md_T LINE L1 374 5588 -298 4 980 8346 38 1 0 chr12 51792066 51793061 -69464469 + L1Md_T LINE L1 5590 6585 0 4 980 244 176 20 0 chr12 51793077 51793128 -69464402 + L1MD LINE L1 5200 5251 -895 4 980 200 261 0 0 chr12 51793198 51793244 -69464286 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 980 627 149 0 0 chr12 51793564 51793671 -69463859 + (CA)n Simple_repeat Simple_repeat 1 107 0 4 980 603 102 0 0 chr12 51793681 51793769 -69463761 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 4 980 5447 72 142 1 chr12 51795035 51795811 -69461719 - L1_Mus3 LINE L1 0 6638 5754 4 980 4444 110 3 0 chr12 51795811 51796483 -69461047 + L1_Mus3 LINE L1 5068 5741 -142 4 980 429 200 158 16 chr12 51797375 51797502 -69460028 + B1_Mm SINE Alu 2 146 -1 4 980 468 0 0 0 chr12 51798982 51799034 -69458496 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 980 288 0 0 0 chr12 51799034 51799065 -69458465 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 980 261 0 0 0 chr12 51800691 51800720 -69456810 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 980 216 0 0 0 chr12 51800720 51800743 -69456787 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 980 483 242 135 73 chr12 51800806 51800984 -69456546 + B3A SINE B2 9 197 -1 4 980 651 255 8 15 chr12 51801020 51801182 -69456348 + B3 SINE B2 1 151 -44 4 980 288 0 0 0 chr12 51801185 51801217 -69456313 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 4 980 1948 239 129 5 chr12 51801486 51802067 -69455463 + Lx7 LINE L1 6763 7415 -281 4 980 189 132 0 0 chr12 51802081 51802119 -69455411 + (T)n Simple_repeat Simple_repeat 1 38 0 4 980 1732 198 35 50 chr12 51802553 51802930 -69454600 - ORR1C1 LTR MaLR 0 378 8 4 980 25 0 0 0 chr12 51803154 51803179 -69454351 + AT_rich Low_complexity Low_complexity 1 25 0 4 980 643 124 0 17 chr12 51803946 51804044 -69453486 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 4 980 447 19 0 0 chr12 51804044 51804096 -69453434 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 980 643 124 0 17 chr12 51804096 51804112 -69453418 + (TTTC)n Simple_repeat Simple_repeat 2 16 0 4 980 517 318 61 51 chr12 51804229 51804623 -69452907 + L1M5 LINE L1 4970 5367 -779 4 980 22 0 0 0 chr12 51805877 51805899 -69451631 + AT_rich Low_complexity Low_complexity 1 22 0 4 980 368 383 79 108 chr12 51806339 51806603 -69450927 - LTR33 LTR ERVL -4 511 265 4 980 3141 66 2 14 chr12 51806603 51807020 -69450510 - L1Md_F2 LINE L1 -2 6580 6169 4 980 368 383 79 108 chr12 51807020 51807226 -69450304 - LTR33 LTR ERVL -251 264 55 4 980 766 184 0 0 chr12 51807466 51807602 -69449928 + B1_Mm SINE Alu 5 140 -7 4 980 25 0 0 0 chr12 51808010 51808035 -69449495 + AT_rich Low_complexity Low_complexity 1 25 0 4 980 245 345 73 0 chr12 51808420 51808530 -69449000 - LTR16A1 LTR ERVL 0 456 339 4 980 1156 74 0 0 chr12 51809490 51809638 -69447892 + B1_Mus1 SINE Alu 1 148 0 4 980 206 250 0 19 chr12 51809829 51809882 -69447648 + GA-rich Low_complexity Low_complexity 1 52 0 4 980 25 31 0 0 chr12 51812354 51812386 -69445144 + AT_rich Low_complexity Low_complexity 1 32 0 4 980 189 107 0 0 chr12 51812813 51812841 -69444689 + (AGGGGG)n Simple_repeat Simple_repeat 2 29 0 4 980 594 41 0 0 chr12 51812845 51812918 -69444612 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 980 291 360 0 9 chr12 51814743 51814855 -69442675 + MIR SINE MIR 36 146 -62 4 980 192 200 0 0 chr12 51815044 51815089 -69442441 + T-rich Low_complexity Low_complexity 1 45 0 4 980 480 99 0 0 chr12 51816916 51816987 -69440543 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 980 336 302 99 16 chr12 51817228 51817349 -69440181 + MER97c DNA MER1_type? 34 164 -926 4 980 28 29 0 0 chr12 51818457 51818492 -69439038 + AT_rich Low_complexity Low_complexity 1 35 0 4 980 312 221 13 13 chr12 51818493 51818581 -69438949 - L1M2 LINE L1 -777 5385 5295 4 980 266 262 56 0 chr12 51818681 51818788 -69438742 - Lx9 LINE L1 -151 7493 7381 4 980 292 288 0 12 chr12 51819012 51819093 -69438437 + ID4_ SINE ID 1 80 -3 4 980 5675 207 18 16 chr12 51819841 51821609 -69435921 - Lx6 LINE L1 -612 6438 4634 4 980 3914 236 160 32 chr12 51821609 51822729 -69434801 + RLTR22_Mur LTR ERVK 1 1308 -540 4 980 375 23 0 0 chr12 51822729 51822773 -69434757 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 980 419 66 0 50 chr12 51822775 51822855 -69434675 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 980 3914 236 160 32 chr12 51822855 51823204 -69434326 + RLTR22_Mur LTR ERVK 1309 1659 -189 4 980 589 15 0 0 chr12 51823440 51823507 -69434023 + (GAA)n Simple_repeat Simple_repeat 3 69 0 4 980 959 150 0 16 chr12 51823507 51823690 -69433840 + GA-rich Low_complexity Low_complexity 1 180 0 4 980 558 0 0 0 chr12 51823690 51823752 -69433778 + (GGA)n Simple_repeat Simple_repeat 1 62 0 4 980 430 222 93 0 chr12 51823761 51823869 -69433661 + RMER12 LTR ERVK 1157 1274 -48 4 980 1117 132 119 0 chr12 51823896 51824123 -69433407 - Lx6 LINE L1 -1246 4631 4378 4 980 458 289 113 15 chr12 51824198 51824605 -69432925 - L1M4b LINE L1 -5563 1771 1325 4 980 1575 104 16 20 chr12 51825302 51825557 -69431973 + Lx LINE L1 6398 6651 -3 4 980 5330 82 4 37 chr12 51825767 51826557 -69430973 - L1_Mus4 LINE L1 0 6636 5873 4 980 3260 141 9 61 chr12 51826557 51826741 -69430789 + L1_Mm LINE L1 5255 5437 -446 4 980 2878 73 0 0 chr12 51826741 51827109 -69430421 + L1_Mus2 LINE L1 6198 6565 -1 4 980 3260 141 9 61 chr12 51827109 51827160 -69430370 + L1_Mm LINE L1 5438 5464 -419 4 980 1080 96 7 0 chr12 51827160 51827306 -69430224 + B1_Mm SINE Alu 1 147 0 4 980 3260 141 9 61 chr12 51827306 51827712 -69429818 + L1_Mm LINE L1 5465 5864 -19 4 980 225 65 0 0 chr12 51828259 51828290 -69429240 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 980 3054 82 97 2 chr12 51829349 51829818 -69427712 + L1_Mus3 LINE L1 6140 6638 0 4 980 1621 344 94 31 chr12 51829825 51830399 -69427131 + L2a LINE L2 1823 2447 -972 4 980 3034 26 0 0 chr12 51830399 51830745 -69426785 + ORR1A0 LTR MaLR 1 346 0 4 980 1621 335 129 32 chr12 51830745 51831641 -69425889 + L2a LINE L2 2448 3423 -3 4 980 945 187 103 0 chr12 51831750 51831953 -69425577 - URR1A DNA MER1_type 0 226 3 4 980 288 0 0 0 chr12 51833429 51833461 -69424069 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 980 333 0 0 0 chr12 51834542 51834579 -69422951 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 4 980 501 71 0 0 chr12 51834739 51834809 -69422721 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 980 21 0 0 0 chr12 51835560 51835581 -69421949 + AT_rich Low_complexity Low_complexity 1 21 0 4 980 1483 238 42 12 chr12 51835877 51836282 -69421248 + MTD LTR MaLR 3 419 0 4 980 476 175 19 46 chr12 51836420 51836528 -69421002 + B1_Mur2 SINE Alu 45 149 0 4 980 2322 336 14 21 chr12 51836725 51837568 -69419962 - Lx8 LINE L1 -181 7292 6456 4 980 277 350 38 0 chr12 51837583 51837663 -69419867 + ID4 SINE ID 1 83 0 4 980 936 226 24 19 chr12 51838170 51838378 -69419152 + B3 SINE B2 2 210 -6 4 980 4482 48 11 9 chr12 51839306 51839877 -69417653 + L1Md_F2 LINE L1 6011 6582 0 4 980 1122 202 186 18 chr12 51840492 51840819 -69416711 - ORR1C2 LTR MaLR -2 382 1 4 980 456 265 24 49 chr12 51841064 51841187 -69416343 - MLT-int LTR MaLR -976 759 640 4 980 998 229 10 40 chr12 51841596 51841896 -69415634 + L1_Rod LINE L1 2701 2991 -2856 4 980 34499 71 8 5 chr12 51841932 51843647 -69413883 - L1Md_F2 LINE L1 0 6582 4877 4 980 7760 19 0 0 chr12 51843647 51844539 -69412991 + L1Md_A LINE L1 5691 6582 0 4 980 34499 94 7 15 chr12 51844539 51849036 -69408494 - L1Md_F2 LINE L1 -1007 4876 405 4 980 3681 256 35 51 chr12 51849097 51849618 -69407912 + L1_Rod LINE L1 3027 3561 -2286 4 980 3645 58 15 0 chr12 51849618 51850082 -69407448 - L1Md_F2 LINE L1 0 6582 6112 4 980 3681 256 35 51 chr12 51850082 51850921 -69406609 + L1_Rod LINE L1 3562 4363 -1484 4 980 397 262 68 43 chr12 51850968 51851203 -69406327 - L1M4 LINE L1 -1506 4640 4400 4 980 270 0 43 43 chr12 51851616 51851663 -69405867 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 4 980 2418 325 65 16 chr12 51851916 51852926 -69404604 + Lx8 LINE L1 6231 7290 -183 4 980 207 0 0 0 chr12 51852952 51852975 -69404555 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 980 21 57 0 0 chr12 51853123 51853158 -69404372 + AT_rich Low_complexity Low_complexity 1 35 0 4 980 2400 268 56 18 chr12 51853555 51854266 -69403264 - Tigger7 DNA MER2_type -1724 767 30 4 980 660 275 22 11 chr12 51855313 51855493 -69402037 + B3A SINE B2 1 182 -16 4 980 29 0 0 0 chr12 51855510 51855539 -69401991 + AT_rich Low_complexity Low_complexity 1 29 0 4 980 2061 51 0 0 chr12 51855946 51856199 -69401331 + L1_Mus1 LINE L1 6315 6567 0 4 980 345 226 35 12 chr12 51856430 51856515 -69401015 + MTD LTR MaLR 315 401 -18 4 980 1130 205 237 6 chr12 51856786 51857115 -69400415 - MTD LTR MaLR -14 405 1 4 980 24 32 0 0 chr12 51858005 51858036 -69399494 + AT_rich Low_complexity Low_complexity 1 31 0 4 980 239 227 19 58 chr12 51858257 51858360 -69399170 + Lx9 LINE L1 7401 7499 -145 4 980 522 83 0 0 chr12 51859044 51859116 -69398414 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 980 369 0 0 0 chr12 51859647 51859688 -69397842 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 980 304 252 144 55 chr12 51859688 51859934 -69397596 - L1MA8 LINE L1 -80 6211 5939 4 980 192 77 0 0 chr12 51859953 51859979 -69397551 + (TGG)n Simple_repeat Simple_repeat 1 26 0 4 980 1086 258 89 69 chr12 51860179 51860729 -69396801 - L1MA8 LINE L1 -334 5957 5397 4 980 2316 192 10 7 chr12 51860912 51861322 -69396208 + MTC LTR MaLR 3 413 -8 4 980 22 0 0 0 chr12 51861430 51861452 -69396078 + AT_rich Low_complexity Low_complexity 1 22 0 4 980 1811 289 58 38 chr12 51861535 51862333 -69395197 + Lx7 LINE L1 6703 7680 -16 5 980 265 200 0 0 chr12 51862371 51862421 -69395109 - U6 snRNA snRNA -53 54 5 5 980 830 280 0 0 chr12 51862491 51862677 -69394853 + Lx5 LINE L1 6176 6361 -689 5 980 434 301 0 0 chr12 51862716 51862849 -69394681 + Lx5 LINE L1 6508 6640 -410 5 980 8139 61 12 0 chr12 51862850 51863889 -69393641 + L1Md_F2 LINE L1 4535 5586 -297 5 980 7746 51 15 14 chr12 51863889 51864880 -69392650 + L1Md_F2 LINE L1 5587 6578 -4 5 980 854 268 178 27 chr12 51864929 51865267 -69392263 + Lx6 LINE L1 7049 7437 -23 5 980 297 209 0 0 chr12 51865824 51865891 -69391639 + A-rich Low_complexity Low_complexity 1 67 0 5 980 243 88 0 0 chr12 51866548 51866582 -69390948 + (A)n Simple_repeat Simple_repeat 1 34 0 5 980 1217 177 60 8 chr12 51866836 51867070 -69390460 + Lx6 LINE L1 6361 6606 -854 5 980 659 226 43 27 chr12 51867769 51867955 -69389575 - MTC-int LTR MaLR -160 1098 910 5 980 357 188 29 14 chr12 51867946 51868016 -69389514 - MTC-int LTR MaLR -715 543 473 5 980 31 26 0 0 chr12 51868390 51868428 -69389102 + AT_rich Low_complexity Low_complexity 1 38 0 5 980 1422 202 72 58 chr12 51868433 51868586 -69388944 + ORR1B2 LTR MaLR 17 151 -216 5 980 585 0 0 0 chr12 51868586 51868651 -69388879 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 980 1422 202 72 58 chr12 51868651 51868843 -69388687 + ORR1B2 LTR MaLR 152 366 -1 5 980 1113 189 42 25 chr12 51868843 51869082 -69388448 + Lx7 LINE L1 7124 7366 -330 5 980 31 58 0 0 chr12 51869082 51869134 -69388396 + AT_rich Low_complexity Low_complexity 1 52 0 5 980 1620 175 26 32 chr12 51869146 51869489 -69388041 + Lx7 LINE L1 7356 7696 0 5 980 707 247 134 22 chr12 51871898 51872130 -69385400 + RLTR11A LTR ERVK 1 258 -270 5 980 269 109 15 45 chr12 51872130 51872197 -69385333 + GA-rich Low_complexity Low_complexity 2 66 0 5 980 1406 191 96 13 chr12 51872204 51872534 -69384996 + RLTR11A LTR ERVK 188 525 -3 5 980 240 306 92 53 chr12 51872534 51872583 -69384947 - PB1D10 SINE Alu -61 56 5 5 980 341 242 174 13 chr12 51873047 51873202 -69384328 - Kanga1b DNA Tc2 -184 595 416 5 980 235 203 43 14 chr12 51873473 51873543 -69383987 + CT-rich Low_complexity Low_complexity 4 75 0 5 980 291 284 64 0 chr12 51873995 51874104 -69383426 - L1MA9 LINE L1 -180 6132 6017 5 980 3925 216 59 16 chr12 51874280 51875193 -69382337 + L1_Rod LINE L1 815 1747 -4100 5 980 243 0 0 0 chr12 51875193 51875220 -69382310 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 980 3925 215 75 19 chr12 51875220 51875825 -69381705 + L1_Rod LINE L1 1748 2411 -3436 5 980 34585 97 10 7 chr12 51875830 51882166 -69375364 - L1Md_F2 LINE L1 0 6582 227 5 980 7242 81 19 8 chr12 51882222 51883418 -69374112 + L1_Mus2 LINE L1 5355 6565 -1 5 980 4573 224 135 55 chr12 51883413 51885156 -69372374 + Lx9 LINE L1 2480 4364 -1483 5 980 222 37 0 0 chr12 51885156 51885183 -69372347 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 980 4573 224 135 55 chr12 51885183 51885269 -69372261 + Lx9 LINE L1 4365 4455 -1392 5 980 2214 95 31 6 chr12 51885284 51885602 -69371928 - L1Md_F2 LINE L1 -13 6569 6244 5 980 30051 35 0 0 chr12 51885602 51890958 -69366572 - L1Md_Gf LINE L1 -577 5309 1 5 980 2644 59 18 0 chr12 51890958 51891299 -69366231 - L1Md_F2 LINE L1 -324 6258 5912 5 980 8841 93 26 50 chr12 51891298 51893753 -69363777 + Lx3A LINE L1 4602 6974 -7 5 980 348 242 62 10 chr12 51893779 51893875 -69363655 + L1_Mur3 LINE L1 4435 4535 -1345 5 980 4006 221 104 25 chr12 51894109 51895070 -69362460 + Lx9 LINE L1 4493 5538 -309 5 980 261 0 0 0 chr12 51895070 51895099 -69362431 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 980 4209 274 84 13 chr12 51895099 51896732 -69360798 + Lx9 LINE L1 5539 7476 -168 5 980 308 119 17 0 chr12 51896732 51896791 -69360739 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 980 373 279 12 9 chr12 51896849 51896979 -69360551 + L1VL4 LINE L1 174 280 -6022 5 980 4478 83 1 0 chr12 51896986 51897636 -69359894 + MusHAL1 LINE L1 168 818 -1894 5 980 18446 101 5 6 chr12 51897621 51901074 -69356456 + L1_Mus2 LINE L1 3117 6565 -1 5 980 210 71 0 0 chr12 51901186 51901214 -69356316 + (A)n Simple_repeat Simple_repeat 1 28 0 5 980 7834 122 12 2 chr12 51901215 51902811 -69354719 + L1_Mus3 LINE L1 4571 6185 -453 5 980 251 318 103 0 chr12 51903177 51903284 -69354246 - PB1 SINE Alu -7 120 3 5 980 22 70 0 0 chr12 51904390 51904433 -69353097 + AT_rich Low_complexity Low_complexity 1 43 0 5 981 648 296 98 96 chr12 51906381 51906655 -69350875 - L1ME1 LINE L1 -153 6026 5728 5 981 759 52 0 0 chr12 51906655 51906751 -69350779 + (TC)n Simple_repeat Simple_repeat 1 96 0 5 981 648 296 93 94 chr12 51906751 51907148 -69350382 - L1ME1 LINE L1 -452 5727 5358 5 981 259 305 63 0 chr12 51907173 51907268 -69350262 + PB1D9 SINE Alu 18 118 -2 5 981 232 267 176 0 chr12 51907294 51907481 -69350049 - L1ME1 LINE L1 -847 5299 5080 5 981 233 163 20 0 chr12 51907493 51907542 -69349988 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 981 474 299 80 31 chr12 51907577 51908041 -69349489 - L1MD LINE L1 -1099 5047 4576 5 981 800 113 26 0 chr12 51908101 51908216 -69349314 + Lx4A LINE L1 6809 6926 -132 5 981 246 376 0 0 chr12 51909038 51909211 -69348319 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 5 981 22 0 0 0 chr12 51909549 51909571 -69347959 + AT_rich Low_complexity Low_complexity 1 22 0 5 981 263 234 16 0 chr12 51910945 51911009 -69346521 - 4.5SRNA scRNA scRNA -25 69 5 5 981 471 35 0 0 chr12 51911976 51912033 -69345497 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 981 227 286 107 0 chr12 51912167 51912251 -69345279 + Charlie13a DNA Charlie 223 315 -1199 5 981 432 0 0 0 chr12 51912925 51912973 -69344557 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 981 468 0 0 0 chr12 51914062 51914114 -69343416 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 981 930 187 0 0 chr12 51914534 51914762 -69342768 + CT-rich Low_complexity Low_complexity 1 228 0 5 981 189 132 35 46 chr12 51915625 51915712 -69341818 + (TTATA)n Simple_repeat Simple_repeat 4 89 0 5 981 212 322 33 22 chr12 51915733 51915825 -69341705 - MIR SINE MIR -104 158 66 5 981 29 84 0 0 chr12 51916876 51916947 -69340583 + AT_rich Low_complexity Low_complexity 1 71 0 5 981 303 28 0 0 chr12 51917362 51917398 -69340132 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 5 981 180 0 0 0 chr12 51917585 51917605 -69339925 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 981 1068 53 0 0 chr12 51917665 51917798 -69339732 + B1_Mus2 SINE Alu 1 133 -14 5 981 1518 173 101 56 chr12 51918313 51918669 -69338861 - ORR1C1 LTR MaLR -4 374 3 5 981 29 0 0 0 chr12 51919463 51919492 -69338038 + AT_rich Low_complexity Low_complexity 1 29 0 5 981 206 128 0 25 chr12 51920100 51920140 -69337390 + T-rich Low_complexity Low_complexity 2 40 0 5 981 12733 161 273 8 chr12 51921314 51922908 -69334622 + Lx LINE L1 2090 4441 -1442 5 981 2320 108 25 6 chr12 51922908 51923263 -69334267 + L1_Mus4 LINE L1 6268 6629 -7 5 981 12733 136 160 7 chr12 51923263 51925422 -69332108 + Lx LINE L1 4442 6654 0 5 981 241 294 0 0 chr12 51925436 51925487 -69332043 + PB1D7 SINE Alu 69 119 -1 5 981 335 60 0 20 chr12 51925488 51925539 -69331991 + (CTA)n Simple_repeat Simple_repeat 1 50 0 5 981 222 171 0 0 chr12 51925539 51925580 -69331950 + (TAA)n Simple_repeat Simple_repeat 3 43 0 5 981 834 227 14 5 chr12 51925580 51925797 -69331733 + L1_Rod LINE L1 1441 1659 -4188 5 981 3892 209 23 11 chr12 51925833 51926818 -69330712 - Lx6 LINE L1 -1006 6454 5446 5 981 2129 224 32 8 chr12 51926832 51927300 -69330230 + Lx6 LINE L1 6500 6978 -482 5 981 470 264 259 0 chr12 51927306 51927415 -69330115 + Lx6 LINE L1 7145 7298 -162 5 981 416 51 0 17 chr12 51927415 51927475 -69330055 + (TATTG)n Simple_repeat Simple_repeat 2 60 0 5 981 470 264 259 0 chr12 51927475 51927539 -69329991 + Lx6 LINE L1 7299 7362 -98 5 981 1378 185 83 83 chr12 51927551 51927776 -69329754 + L1_Rod LINE L1 1678 1897 -3950 5 981 1345 113 0 10 chr12 51927776 51927972 -69329558 + B2_Mm2 SINE B2 1 194 -1 5 981 2762 272 57 47 chr12 51927972 51929383 -69328147 + L1_Rod LINE L1 1891 3350 -2497 5 981 2531 171 204 19 chr12 51929404 51929986 -69327544 + RMER6C LTR ERVK 1 690 0 5 981 2401 65 44 0 chr12 51930099 51930420 -69327110 + L1_Mus1 LINE L1 6233 6567 0 5 981 1736 91 12 0 chr12 51930435 51930688 -69326842 + L1_Mur2 LINE L1 4472 4727 -1150 5 981 2290 201 91 12 chr12 51930685 51931202 -69326328 + Lx4B LINE L1 6479 7036 -22 5 981 459 0 0 0 chr12 51931202 51931253 -69326277 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 981 662 275 106 32 chr12 51931347 51931801 -69325729 - L1M4c LINE L1 -3523 2856 2361 5 981 2114 197 54 3 chr12 51931850 51932242 -69325288 + MTC LTR MaLR 1 412 -9 5 981 365 364 105 34 chr12 51932344 51932754 -69324776 - L1M4c LINE L1 -4638 1746 1308 5 981 487 291 64 19 chr12 51932773 51933039 -69324491 + L1M2 LINE L1 4943 5220 -923 5 981 3306 134 14 118 chr12 51933033 51933771 -69323759 + L1_Mur2 LINE L1 2735 3395 -2482 5 981 483 242 87 110 chr12 51933821 51934039 -69323491 - MT2B LTR ERVL -388 213 1 5 981 3184 178 13 80 chr12 51934079 51934764 -69322766 - ORR1B1-int LTR MaLR -1324 639 1 5 981 1861 176 81 8 chr12 51934768 51935128 -69322402 - ORR1B1 LTR MaLR -8 386 1 5 981 1096 263 60 13 chr12 51935176 51935573 -69321957 - L1M2 LINE L1 -581 5710 5297 5 981 21 0 0 0 chr12 51936537 51936558 -69320972 + AT_rich Low_complexity Low_complexity 1 21 0 5 981 4876 70 0 2 chr12 51937058 51937750 -69319780 - L1_Mm LINE L1 -882 4998 4315 5 981 7098 74 1 0 chr12 51937749 51938681 -69318849 + L1_Mm LINE L1 4951 5883 0 5 981 903 44 113 35 chr12 51938701 51938842 -69318688 + L1Md_F2 LINE L1 6428 6579 -3 5 981 352 307 19 65 chr12 51939014 51939122 -69318408 + B4 SINE B4 2 104 -188 5 981 797 141 0 11 chr12 51939162 51939341 -69318189 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 5 981 2774 18 18 0 chr12 51939581 51939911 -69317619 + L1Md_F3 LINE L1 6249 6584 0 5 981 21 0 0 0 chr12 51940058 51940079 -69317451 + AT_rich Low_complexity Low_complexity 1 21 0 5 981 298 317 119 22 chr12 51940194 51940462 -69317068 + L1M2 LINE L1 5525 5818 -479 5 981 4912 119 8 1 chr12 51941309 51942027 -69315503 + Lx3A LINE L1 6235 6957 -24 5 981 402 74 0 0 chr12 51942027 51942081 -69315449 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 981 2173 78 24 3 chr12 51942151 51942449 -69315081 + L1_Mus4 LINE L1 6333 6636 0 5 981 383 0 0 21 chr12 51942542 51942590 -69314940 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 981 22 0 0 0 chr12 51943090 51943112 -69314418 + AT_rich Low_complexity Low_complexity 1 22 0 5 981 262 381 0 45 chr12 51943383 51943493 -69314037 + MIR SINE MIR 49 153 -55 5 981 281 362 60 21 chr12 51944412 51944646 -69312884 + MIRb SINE MIR 26 268 0 5 981 391 258 84 23 chr12 51944661 51944792 -69312738 - Tigger5 DNA MER2_type 0 2406 2268 5 981 414 302 102 23 chr12 51944792 51944968 -69312562 - Tigger5 DNA MER2_type -2193 213 24 5 981 670 393 56 3 chr12 51946054 51946340 -69311190 + MLT1F2 LTR MaLR 1 301 -259 6 981 27 0 0 0 chr12 51947567 51947594 -69309936 + AT_rich Low_complexity Low_complexity 1 27 0 6 981 1057 254 24 76 chr12 51948221 51948935 -69308595 + L1MA8 LINE L1 5485 6141 -150 6 981 507 288 22 22 chr12 51949060 51949195 -69308335 - B1F SINE Alu 0 149 15 6 981 441 162 9 35 chr12 51949209 51949324 -69308206 + MER33 DNA MER1_type 105 216 -108 6 981 214 314 30 12 chr12 51949429 51949523 -69308007 - MIR SINE MIR -159 109 9 6 981 216 0 0 0 chr12 51949644 51949668 -69307862 + (T)n Simple_repeat Simple_repeat 1 24 0 6 981 423 311 25 118 chr12 51950644 51950881 -69306649 - Tigger13a DNA MER2_type -57 714 500 6 981 505 329 42 42 chr12 51950933 51951222 -69306308 - Tigger13a DNA MER2_type -429 342 54 6 981 290 228 0 8 chr12 51953190 51953318 -69304212 + (TG)n Simple_repeat Simple_repeat 2 128 0 6 981 602 113 0 10 chr12 51953852 51953950 -69303580 + (TA)n Simple_repeat Simple_repeat 1 97 0 6 981 216 0 0 0 chr12 51954658 51954682 -69302848 + (A)n Simple_repeat Simple_repeat 1 24 0 6 981 324 0 0 0 chr12 51956632 51956668 -69300862 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 981 225 65 0 0 chr12 51958238 51958269 -69299261 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 6 981 547 227 27 0 chr12 51958272 51958422 -69299108 - MERVL_2A-int LTR ERVL -1607 4154 4001 6 981 2366 88 65 3 chr12 51958447 51958801 -69298729 - L1_Mus3 LINE L1 -2 6636 6261 6 981 6501 91 34 1 chr12 51959281 51960218 -69297312 - Lx3_Mus LINE L1 0 7009 6042 6 981 409 265 73 115 chr12 51960227 51960248 -69297282 - B2_Mm2 SINE B2 -10 185 163 6 981 684 35 0 0 chr12 51960248 51960335 -69297195 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 981 279 0 0 0 chr12 51960335 51960365 -69297165 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 981 678 265 73 115 chr12 51960365 51960534 -69296996 - B3A SINE B2 -34 164 2 6 981 286 42 0 40 chr12 51961931 51961981 -69295549 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 6 981 5562 83 24 56 chr12 51962344 51963221 -69294309 - L1_Mur1 LINE L1 0 5886 5038 6 981 323 268 70 39 chr12 51963406 51963662 -69293868 + L1M4 LINE L1 2775 3038 -3108 6 981 773 317 19 7 chr12 51964190 51964460 -69293070 + B4A SINE B4 2 274 -18 6 981 276 30 0 0 chr12 51964503 51964536 -69292994 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 981 2443 54 1 9 chr12 51964565 51964917 -69292613 + L1Md_T LINE L1 5216 5586 -297 6 981 8384 36 0 0 chr12 51964917 51965911 -69291619 + L1Md_T LINE L1 5587 6580 -2 6 981 510 253 100 47 chr12 51966062 51966142 -69291388 + L1ME1 LINE L1 5647 5720 -459 6 981 180 0 0 0 chr12 51966142 51966162 -69291368 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 981 510 253 100 47 chr12 51966162 51966442 -69291088 + L1ME1 LINE L1 5721 6026 -153 6 981 546 231 8 8 chr12 51966451 51966582 -69290948 + L1MA10 LINE L1 6194 6324 -10 6 981 783 121 0 0 chr12 51967023 51967172 -69290358 + (TC)n Simple_repeat Simple_repeat 2 150 0 6 981 447 19 0 0 chr12 51967172 51967224 -69290306 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 981 222 37 0 0 chr12 51967541 51967568 -69289962 + (T)n Simple_repeat Simple_repeat 1 27 0 6 981 8073 20 1 0 chr12 51967576 51969186 -69288344 - L1Md_A LINE L1 -2 6580 4969 6 981 204 182 0 0 chr12 51969813 51969857 -69287673 + (CAT)n Simple_repeat Simple_repeat 1 44 0 6 981 253 247 31 15 chr12 51969896 51969964 -69287566 + ID4 SINE ID 23 91 -61 6 981 231 36 0 0 chr12 51970175 51970203 -69287327 + (TAA)n Simple_repeat Simple_repeat 3 30 0 6 981 1248 107 116 10 chr12 51970274 51970473 -69287057 + URR1A DNA MER1_type 7 226 0 6 981 5730 88 93 1 chr12 51970716 51971586 -69285944 - Lx LINE L1 0 6654 5705 6 981 4036 139 29 7 chr12 51971585 51972316 -69285214 + Lx5 LINE L1 4984 5730 -1320 6 981 3962 117 6 37 chr12 51972378 51972999 -69284531 - Lx3C LINE L1 -7 6969 6368 6 981 5850 104 0 13 chr12 51973000 51973905 -69283625 + L1_Mur1 LINE L1 4555 5447 -439 6 981 414 0 0 0 chr12 51974242 51974288 -69283242 + (TTG)n Simple_repeat Simple_repeat 2 47 0 6 981 1435 251 68 26 chr12 51976342 51976722 -69280808 + MTD LTR MaLR 6 401 -18 6 981 324 0 0 0 chr12 51978195 51978231 -69279299 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 981 310 380 0 18 chr12 51978958 51979068 -69278462 + PB1D10 SINE Alu 5 112 -5 6 981 260 182 0 0 chr12 51979575 51979619 -69277911 - ORR1E LTR MaLR -315 44 1 6 981 1202 232 62 92 chr12 51980164 51980633 -69276897 - RMER17B LTR ERVK -179 779 325 6 981 12206 56 0 0 chr12 51980633 51982255 -69275275 - L1Md_F2 LINE L1 -533 5350 3729 6 981 1733 47 0 0 chr12 51982253 51982468 -69275062 + L1Md_F2 LINE L1 5372 5586 -297 6 981 8118 43 2 8 chr12 51982468 51983468 -69274062 + L1Md_F2 LINE L1 5587 6580 -2 6 981 1099 221 77 46 chr12 51983468 51983818 -69273712 - RMER17B LTR ERVK -545 361 1 6 981 191 299 77 13 chr12 51984075 51984153 -69273377 + L3b LINE CR1 167 249 -233 6 981 437 336 9 36 chr12 51984288 51984513 -69273017 + MER20 DNA MER1_type 1 219 0 6 981 1281 18 0 31 chr12 51984894 51985120 -69272410 + (TTC)n Simple_repeat Simple_repeat 1 219 0 6 981 652 118 0 56 chr12 51985122 51985218 -69272312 + polypyrimidine Low_complexity Low_complexity 67 154 0 6 981 1210 56 0 27 chr12 51985218 51985403 -69272127 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 981 652 118 0 56 chr12 51985403 51985468 -69272062 + polypyrimidine Low_complexity Low_complexity 2 66 0 6 981 378 286 71 0 chr12 51985783 51985895 -69271635 + MT2A LTR ERVL 232 351 -182 6 981 2181 218 48 2 chr12 51985905 51986428 -69271102 + Lx3C LINE L1 6428 6974 -2 6 981 23 33 0 0 chr12 51986428 51986458 -69271072 + AT_rich Low_complexity Low_complexity 1 30 0 6 981 390 218 181 14 chr12 51986466 51986610 -69270920 + MT2A LTR ERVL 358 525 -8 6 981 380 332 66 10 chr12 51987098 51987223 -69270307 + B4A SINE B4 84 218 -74 6 981 594 0 0 0 chr12 51987223 51987289 -69270241 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 6 981 380 332 66 10 chr12 51987289 51987361 -69270169 + B4A SINE B4 219 291 -1 6 981 399 21 0 0 chr12 51987366 51987414 -69270116 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 981 1001 116 14 0 chr12 51988779 51988925 -69268605 - B1_Mur4 SINE Alu 0 150 3 6 981 691 281 6 0 chr12 51989186 51989346 -69268184 - MTD LTR MaLR -257 162 2 6 981 231 272 83 46 chr12 51989349 51989457 -69268073 + MLT1D LTR MaLR 394 505 0 6 981 232 70 47 0 chr12 51989611 51989654 -69267876 + (TTG)n Simple_repeat Simple_repeat 2 46 0 6 981 725 203 189 12 chr12 51989766 51990010 -69267520 - Lx7 LINE L1 -2 7694 7408 6 981 4036 154 55 4 chr12 51990003 51990797 -69266733 - L1_Mur3 LINE L1 -1051 4829 3995 6 981 5353 168 40 37 chr12 51990793 51992420 -69265110 - L1_Mur3 LINE L1 -3454 2426 804 6 981 1774 142 105 60 chr12 51992564 51992945 -69264585 + RMER10B LTR ERVL 1 398 0 6 981 1184 122 83 0 chr12 51995863 51996067 -69261463 - Lx2A LINE L1 -10 6998 6778 6 981 4603 129 0 10 chr12 51996849 51997559 -69259971 + Lx LINE L1 5946 6648 -6 6 981 324 0 0 0 chr12 51997828 51997864 -69259666 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 981 3241 46 86 60 chr12 51999059 51999522 -69258008 - MT2C_Mm LTR ERVL 0 475 1 6 981 1085 218 83 24 chr12 52000015 52000269 -69257261 - MTD LTR MaLR -2 417 149 1 981 225 0 0 0 chr12 52000637 52000662 -69256868 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 981 357 257 27 45 chr12 52000676 52000786 -69256744 - B4 SINE B4 -4 288 181 3 981 234 105 0 0 chr12 52000790 52000828 -69256702 + (GGCTG)n Simple_repeat Simple_repeat 3 40 0 4 981 284 233 89 65 chr12 52002715 52002839 -69254691 - RMER15 LTR ERVL -422 153 27 5 981 350 183 0 0 chr12 52002890 52002950 -69254580 - RMER15 LTR ERVL -515 60 1 5 981 1148 237 16 0 chr12 52003803 52004060 -69253470 - Lx9 LINE L1 -801 6843 6583 6 981 1381 245 145 31 chr12 52004086 52004626 -69252904 + Lx9 LINE L1 6868 7468 -176 7 981 369 0 0 0 chr12 52004627 52004668 -69252862 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 981 1534 248 44 39 chr12 52004675 52005036 -69252494 + ORR1D2 LTR MaLR 1 363 -7 9 981 23 33 0 0 chr12 52005143 52005173 -69252357 + AT_rich Low_complexity Low_complexity 1 30 0 1 981 23 0 0 0 chr12 52005323 52005346 -69252184 + AT_rich Low_complexity Low_complexity 1 23 0 1 981 414 0 0 0 chr12 52006087 52006133 -69251397 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 981 990 249 37 40 chr12 52006182 52006533 -69250997 + RLTR15 LTR ERVK 1 350 -9 1 981 401 271 132 5 chr12 52007103 52007307 -69250223 + L1MB2 LINE L1 5903 6132 -39 1 981 31419 76 2 5 chr12 52007453 52012787 -69244743 + L1Md_F2 LINE L1 310 5585 -298 1 981 8011 48 1 5 chr12 52012788 52013787 -69243743 + L1Md_F2 LINE L1 5587 6581 -1 1 981 850 261 65 62 chr12 52013806 52014096 -69243434 + RLTR18B LTR ERVK 1 291 -221 1 981 25787 85 76 14 chr12 52014142 52018512 -69239018 - Lx3A LINE L1 0 6981 2266 1 981 3198 148 276 36 chr12 52018512 52019337 -69238193 - RLTR13D5 LTR ERVK 0 1023 1 1 981 25787 111 78 16 chr12 52019337 52021537 -69235993 - Lx3A LINE L1 -3621 2265 3 1 981 1342 146 38 0 chr12 52021542 52021755 -69235775 + RLTR18B LTR ERVK 292 512 0 1 981 520 343 220 41 chr12 52022090 52023082 -69234448 + L2 LINE L2 644 1812 -1607 1 981 275 411 64 35 chr12 52023613 52023926 -69233604 - LTR85a LTR Gypsy? -50 652 331 2 981 406 269 43 29 chr12 52023989 52024127 -69233403 - LTR85a LTR Gypsy? -542 160 21 2 981 234 327 18 80 chr12 52024721 52024834 -69232696 - L2c LINE L2 -5 3382 3277 2 981 260 322 127 19 chr12 52026523 52026735 -69230795 + MIRm SINE MIR 2 236 -40 2 981 2129 163 52 19 chr12 52027591 52028017 -69229513 + RMER10A LTR ERVL 1 440 -2 2 981 776 278 249 9 chr12 52028154 52028483 -69229047 + MLT1A0 LTR MaLR 1 408 0 2 981 570 248 26 0 chr12 52028586 52028703 -69228827 + B3 SINE B2 86 205 -11 2 981 40 21 0 0 chr12 52028703 52028750 -69228780 + AT_rich Low_complexity Low_complexity 1 47 0 2 981 717 257 22 82 chr12 52029764 52030082 -69227448 + RLTR11B LTR ERVK 1 319 -126 2 981 464 271 23 111 chr12 52030105 52030321 -69227209 + RLTR11B LTR ERVK 242 438 -15 2 981 476 342 92 47 chr12 52030380 52030803 -69226727 + L2 LINE L2 2233 2674 -745 2 981 247 364 0 0 chr12 52030826 52030892 -69226638 - LTR16B2 LTR ERVL -253 209 144 2 981 1437 229 73 6 chr12 52030894 52031223 -69226307 + MTD LTR MaLR 2 352 -67 3 981 385 210 90 0 chr12 52031239 52031350 -69226180 + Lx4B LINE L1 6700 6863 -195 3 981 387 125 0 40 chr12 52031354 52031429 -69226101 + Lx4B LINE L1 6987 7058 0 3 981 457 193 7 1 chr12 52031433 52031518 -69226012 + MTD LTR MaLR 319 419 0 3 981 227 201 129 80 chr12 52031861 52032002 -69225528 + MIR SINE MIR 14 162 -100 3 981 440 291 97 0 chr12 52032136 52032270 -69225260 + RSINE1 SINE B4 5 151 -14 3 981 811 206 43 37 chr12 52032358 52032545 -69224985 + MTD LTR MaLR 1 188 -233 3 981 3207 190 37 29 chr12 52032547 52033272 -69224258 + Lx2B LINE L1 6268 6998 -2 3 981 1049 198 27 22 chr12 52033272 52033494 -69224036 + MTD LTR MaLR 196 418 -1 3 981 333 0 0 0 chr12 52034789 52034826 -69222704 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 981 459 0 0 0 chr12 52034826 52034876 -69222654 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 981 256 271 0 103 chr12 52034919 52034997 -69222533 - B4A SINE B4 -18 274 205 3 981 579 335 37 21 chr12 52035024 52035213 -69222317 - B3A SINE B2 -1 197 6 3 981 644 306 47 33 chr12 52035216 52035429 -69222101 - B4A SINE B4 -76 216 1 3 122 717 259 54 5 chr12 52035455 52035641 -69221889 + B3 SINE B2 3 197 -19 4 982 415 354 71 14 chr12 52035791 52036003 -69221527 - LTR33B LTR ERVL -14 489 266 4 982 228 135 0 0 chr12 52037403 52037440 -69220090 + (TATG)n Simple_repeat Simple_repeat 2 38 0 4 982 546 16 0 0 chr12 52038285 52038348 -69219182 + (TTGG)n Simple_repeat Simple_repeat 1 63 0 4 982 1010 31 16 0 chr12 52038357 52038486 -69219044 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 4 982 2988 101 56 7 chr12 52038489 52038950 -69218580 + L1_Mus3 LINE L1 6149 6632 -6 4 982 357 24 0 0 chr12 52041720 52041762 -69215768 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 982 225 0 0 0 chr12 52041762 52041786 -69215744 + (CG)n Simple_repeat Simple_repeat 1 25 0 4 982 453 290 10 0 chr12 52046957 52047057 -69210473 + B4A SINE B4 1 101 -191 4 982 873 114 0 0 chr12 52048415 52048547 -69208983 + (GAAA)n Simple_repeat Simple_repeat 4 135 0 4 982 803 189 84 58 chr12 52049038 52049229 -69208301 + B3A SINE B2 1 196 -2 5 982 262 386 62 18 chr12 52049263 52049487 -69208043 - MIR SINE MIR -10 252 19 5 982 22 0 0 0 chr12 52049590 52049612 -69207918 + AT_rich Low_complexity Low_complexity 1 22 0 5 982 467 209 9 0 chr12 52049690 52049805 -69207725 + (TATATG)n Simple_repeat Simple_repeat 2 117 0 5 982 194 0 39 0 chr12 52050388 52050414 -69207116 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 5 982 299 293 56 24 chr12 52050468 52050568 -69206962 - MIRb SINE MIR -171 105 4 5 982 246 345 53 66 chr12 52050655 52050807 -69206723 - L2b LINE L2 -14 3361 3212 5 982 272 176 0 56 chr12 52051188 52051242 -69206288 + MIRc SINE MIR 168 218 -50 5 982 294 179 0 0 chr12 52052005 52052061 -69205469 + CT-rich Low_complexity Low_complexity 1 56 0 5 982 555 16 0 0 chr12 52052064 52052128 -69205402 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 982 255 21 0 78 chr12 52052345 52052396 -69205134 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 982 375 41 0 0 chr12 52058248 52058297 -69199233 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 982 2049 26 4 0 chr12 52058733 52058959 -69198571 - L1_Mus1 LINE L1 0 6567 6341 6 982 1857 94 4 0 chr12 52058959 52059225 -69198305 + L1_Mm LINE L1 3175 3441 -2442 6 982 198 274 55 0 chr12 52062013 52062086 -69195444 + MIR SINE MIR 129 205 -57 6 982 5782 237 42 32 chr12 52062580 52063990 -69193540 + Lx6 LINE L1 5767 7190 -270 6 982 3474 82 37 0 chr12 52064007 52064471 -69193059 - L1_Mus3 LINE L1 -7 6631 6151 6 982 4311 50 6 0 chr12 52064471 52064992 -69192538 + L1_Mus3 LINE L1 5639 6162 -476 6 982 2815 180 139 56 chr12 52064992 52065741 -69191789 - RMER19B LTR ERVK -16 886 5 6 982 1060 198 60 24 chr12 52065745 52065859 -69191671 + Lx7 LINE L1 7440 7561 -135 6 982 866 215 106 20 chr12 52065859 52066058 -69191472 - B3 SINE B2 0 216 1 6 982 1060 198 60 24 chr12 52066058 52066191 -69191339 + Lx7 LINE L1 7562 7696 0 6 982 211 214 0 0 chr12 52069411 52069453 -69188077 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 982 273 299 94 29 chr12 52069522 52069660 -69187870 + MIR3 SINE MIR 48 194 -14 7 982 725 256 0 25 chr12 52072605 52072796 -69184734 + ID_B1 SINE B4 47 224 0 7 982 295 335 12 53 chr12 52072674 52072844 -69184686 - YREP_Mm Unknown Unknown -1517 295 133 7 982 347 192 111 37 chr12 52073519 52073627 -69183903 - PB1D7 SINE Alu 0 120 5 7 982 948 206 20 149 chr12 52073858 52074297 -69183233 - ORR1C2 LTR MaLR -14 360 14 7 982 388 291 137 22 chr12 52074521 52074792 -69182738 + L1MB4 LINE L1 5878 6179 -1 7 982 498 33 0 0 chr12 52074815 52074875 -69182655 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 982 249 33 0 0 chr12 52075351 52075381 -69182149 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 7 982 2170 80 31 16 chr12 52076215 52076532 -69180998 + RLTRETN_Mm LTR ERVK 1 322 0 7 982 25836 33 11 11 chr12 52076532 52081445 -69176085 + MMETn-int LTR ERVK 1 4844 0 7 982 2170 80 31 16 chr12 52081445 52081762 -69175768 + RLTRETN_Mm LTR ERVK 1 322 0 7 982 785 291 71 4 chr12 52082908 52083163 -69174367 + B4A SINE B4 2 273 -19 8 982 303 222 110 14 chr12 52083204 52083277 -69174253 + HAL1-3A_ME LINE L1 2276 2355 -503 8 982 510 114 0 0 chr12 52083287 52083366 -69174164 + (GA)n Simple_repeat Simple_repeat 2 80 0 8 982 425 282 174 62 chr12 52084687 52084929 -69172601 + Tigger13a DNA MER2_type 5 273 -498 8 982 1257 62 0 0 chr12 52084945 52085091 -69172439 + B1_Mus2 SINE Alu 2 147 0 8 982 230 115 0 19 chr12 52085091 52085144 -69172386 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 8 982 621 225 19 78 chr12 52085439 52085593 -69171937 + B1F2 SINE Alu 4 148 -1 8 982 188 282 128 0 chr12 52085994 52086072 -69171458 + MIR SINE MIR 118 205 -57 8 982 206 267 200 0 chr12 52088536 52088596 -69168934 + MIRb SINE MIR 31 102 -166 8 982 900 98 23 11 chr12 52090040 52090216 -69167314 + (CAGAGA)n Simple_repeat Simple_repeat 1 178 0 8 982 273 29 0 0 chr12 52090216 52090250 -69167280 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 9 982 982 165 24 92 chr12 52091712 52091919 -69165611 + B2_Mm2 SINE B2 1 193 -2 9 982 1352 163 17 75 chr12 52092290 52092529 -69165001 - URR1B DNA MER1_type 0 225 1 9 982 373 226 329 0 chr12 52092687 52092833 -69164697 + B3A SINE B2 1 194 -4 9 982 495 48 0 0 chr12 52092939 52093001 -69164529 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 9 982 243 0 0 0 chr12 52093046 52093073 -69164457 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 982 681 238 126 47 chr12 52093264 52093454 -69164076 + B3 SINE B2 2 206 -10 9 982 3394 6 0 0 chr12 52093580 52093937 -69163593 + L1Md_A LINE L1 6226 6582 0 9 982 2070 105 28 47 chr12 52093923 52094244 -69163286 + L1Md_A LINE L1 6265 6579 -3 9 982 241 288 30 0 chr12 52095647 52095713 -69161817 + L2c LINE L2 3320 3387 0 9 982 225 0 0 0 chr12 52097203 52097228 -69160302 + (TTCC)n Simple_repeat Simple_repeat 2 26 0 9 982 192 111 0 0 chr12 52098101 52098137 -69159393 + (A)n Simple_repeat Simple_repeat 1 36 0 1 982 228 302 0 0 chr12 52100109 52100172 -69157358 - MARNA DNA Mariner -346 240 178 1 982 213 39 0 0 chr12 52104087 52104113 -69153417 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 982 33 25 0 0 chr12 52104921 52104961 -69152569 + AT_rich Low_complexity Low_complexity 1 40 0 1 982 894 293 31 28 chr12 52105068 52105356 -69152174 + B4A SINE B4 4 292 0 1 982 870 62 0 0 chr12 52105359 52105472 -69152058 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 1 982 228 276 232 16 chr12 52106028 52106153 -69151377 + L3b LINE CR1 243 394 -88 1 982 1281 256 126 38 chr12 52106958 52107570 -69149960 - L1MB8 LINE L1 -5 6173 5508 1 982 557 207 20 27 chr12 52107584 52107733 -69149797 - L1MB8 LINE L1 -754 5426 5279 1 982 7134 190 50 21 chr12 52107750 52109152 -69148378 - Lx7 LINE L1 -576 7120 5679 1 982 1304 262 205 15 chr12 52109153 52110125 -69147405 - L1MB8 LINE L1 -966 5180 4010 1 982 408 252 80 49 chr12 52110245 52110408 -69147122 - MLT1A0 LTR MaLR -24 341 174 1 982 255 61 0 0 chr12 52111409 52111442 -69146088 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 982 1241 43 0 0 chr12 52111442 52111582 -69145948 - B1_Mus1 SINE Alu -7 141 2 1 982 288 286 77 0 chr12 52111776 52111867 -69145663 - RSINE1 SINE B4 -33 132 35 1 982 618 272 112 58 chr12 52111966 52112243 -69145287 + B4 SINE B4 1 292 0 1 982 309 232 0 0 chr12 52112244 52112339 -69145191 + (CA)n Simple_repeat Simple_repeat 1 95 0 1 982 22 35 0 0 chr12 52112810 52112839 -69144691 + AT_rich Low_complexity Low_complexity 1 29 0 1 982 5651 97 53 98 chr12 52113356 52114291 -69143239 + RLTR13B1 LTR ERVK 1 893 0 1 982 245 137 39 0 chr12 52114879 52114930 -69142600 + (CATA)n Simple_repeat Simple_repeat 1 53 0 1 982 474 18 0 0 chr12 52115181 52115236 -69142294 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 982 231 250 0 0 chr12 52115241 52115285 -69142245 - RSINE1 SINE B4 -36 129 86 1 982 243 88 0 0 chr12 52115288 52115322 -69142208 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 1 982 384 304 21 11 chr12 52115322 52115415 -69142115 - RSINE1 SINE B4 -69 96 3 1 982 367 306 64 8 chr12 52116201 52116326 -69141204 + RSINE1 SINE B4 3 134 -31 1 982 180 111 0 0 chr12 52116327 52116354 -69141176 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1 982 273 248 143 62 chr12 52116663 52116775 -69140755 - MIR SINE MIR -39 223 103 1 982 186 103 0 0 chr12 52117696 52117725 -69139805 + (TATG)n Simple_repeat Simple_repeat 1 29 0 1 982 238 265 33 98 chr12 52118042 52118134 -69139396 + B3A SINE B2 75 160 -38 1 982 1193 287 83 29 chr12 52118190 52118610 -69138920 + Lx8 LINE L1 7027 7469 -4 1 982 280 297 27 0 chr12 52118810 52118884 -69138646 - ID4_ SINE ID -3 80 5 1 982 928 41 164 8 chr12 52119798 52119920 -69137610 + B1_Mm SINE Alu 1 141 -6 1 982 351 0 0 0 chr12 52119922 52119961 -69137569 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 982 390 42 0 0 chr12 52120142 52120190 -69137340 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 982 208 28 54 27 chr12 52120363 52120400 -69137130 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 982 263 383 29 54 chr12 52120793 52120997 -69136533 + MIRb SINE MIR 47 245 -23 1 982 524 225 215 47 chr12 52121487 52121636 -69135894 + Lx8 LINE L1 6594 6767 -706 1 982 517 256 21 49 chr12 52122293 52122437 -69135093 - B1F SINE Alu -8 141 2 1 982 354 23 0 0 chr12 52122448 52122491 -69135039 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 982 243 157 0 0 chr12 52123731 52123782 -69133748 + CT-rich Low_complexity Low_complexity 1 51 0 1 982 2306 224 10 22 chr12 52123783 52124286 -69133244 - Lx6 LINE L1 -1 7459 6963 1 982 1270 48 7 0 chr12 52124680 52124826 -69132704 + B1_Mus1 SINE Alu 2 148 0 1 982 378 196 64 29 chr12 52125159 52125332 -69132198 + (CACAC)n Simple_repeat Simple_repeat 2 180 0 1 982 409 196 42 62 chr12 52125357 52125667 -69131863 + (CACCC)n Simple_repeat Simple_repeat 1 303 0 1 982 274 251 64 42 chr12 52125673 52125816 -69131714 + MTEb LTR MaLR 226 375 -4 1 982 309 302 154 8 chr12 52126901 52127031 -69130499 - MER5A1 DNA MER1_type -2 164 16 1 982 229 236 64 99 chr12 52127222 52127363 -69130167 - MIRb SINE MIR -36 232 97 1 982 403 288 99 104 chr12 52127367 52127549 -69129981 - MER20 DNA MER1_type -2 217 37 1 982 203 308 30 81 chr12 52127647 52127746 -69129784 - MIR3 SINE MIR -7 201 108 1 982 288 77 0 0 chr12 52128770 52128809 -69128721 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 982 729 173 43 12 chr12 52128880 52129044 -69128486 - Lx3B LINE L1 0 6973 6805 1 982 352 258 77 65 chr12 52130401 52130571 -69126959 - MER96B DNA hAT -4 413 242 1 982 357 274 0 0 chr12 52130721 52130827 -69126703 + (CA)n Simple_repeat Simple_repeat 1 106 0 1 982 351 0 0 0 chr12 52130881 52130920 -69126610 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 982 298 247 55 0 chr12 52130932 52131005 -69126525 - PB1 SINE Alu -50 77 1 1 982 294 292 69 78 chr12 52131086 52131520 -69126010 - L1M7 LINE L1 -967 1540 1111 1 982 28 29 0 0 chr12 52131645 52131680 -69125850 + AT_rich Low_complexity Low_complexity 1 35 0 1 982 21 0 0 0 chr12 52131858 52131879 -69125651 + AT_rich Low_complexity Low_complexity 1 21 0 1 982 460 237 154 37 chr12 52131905 52132041 -69125489 + MLT2B2 LTR ERVL 1 152 -363 1 982 325 326 69 8 chr12 52132200 52132330 -69125200 + MLT2B3 LTR ERVL 416 553 -1 1 982 3711 23 0 0 chr12 52134212 52134608 -69122922 + MTA_Mm LTR MaLR 1 396 0 1 982 9827 31 2 5 chr12 52134608 52135710 -69121820 + MTA_Mm-int LTR MaLR 1 1098 0 1 982 3711 23 0 0 chr12 52135710 52136106 -69121424 + MTA_Mm LTR MaLR 1 396 0 1 982 9827 31 2 5 chr12 52136106 52137208 -69120322 + MTA_Mm-int LTR MaLR 1 1098 0 1 982 3711 23 0 0 chr12 52137208 52137604 -69119926 + MTA_Mm LTR MaLR 1 396 0 1 982 638 274 65 109 chr12 52137883 52138055 -69119475 + B3A SINE B2 3 171 -27 1 982 270 0 0 0 chr12 52138055 52138085 -69119445 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 982 337 274 65 109 chr12 52138085 52138113 -69119417 + B2_Mm2 SINE B2 162 194 -1 1 982 26 74 0 0 chr12 52138201 52138255 -69119275 + AT_rich Low_complexity Low_complexity 1 54 0 1 982 21 0 0 0 chr12 52138273 52138294 -69119236 + AT_rich Low_complexity Low_complexity 1 21 0 1 982 333 68 0 0 chr12 52138384 52138428 -69119102 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 982 1131 124 0 0 chr12 52138694 52138871 -69118659 + (GAA)n Simple_repeat Simple_repeat 3 179 0 1 982 1347 60 0 0 chr12 52138890 52139106 -69118424 + (GAA)n Simple_repeat Simple_repeat 1 216 0 1 982 338 257 17 42 chr12 52139160 52139278 -69118252 + MER5A DNA MER1_type 74 188 -1 1 982 504 0 0 0 chr12 52140532 52140588 -69116942 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 982 223 277 49 84 chr12 52141382 52141524 -69116006 + MIR SINE MIR 97 233 -29 1 982 545 121 32 0 chr12 52141582 52141706 -69115824 + (TAGA)n Simple_repeat Simple_repeat 2 129 0 1 982 224 318 0 0 chr12 52143183 52143249 -69114281 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 982 295 314 11 23 chr12 52143330 52143418 -69114112 + PB1 SINE Alu 12 98 -29 1 982 710 358 69 47 chr12 52144303 52145024 -69112506 + L2b LINE L2 2127 2863 -556 1 982 2351 129 0 15 chr12 52145127 52145457 -69112073 + ORR1A4 LTR MaLR 1 325 -4 1 982 228 399 72 30 chr12 52145459 52145723 -69111807 + L2b LINE L2 3101 3375 0 1 982 549 308 59 5 chr12 52145883 52146085 -69111445 + MLT2D LTR ERVL 1 213 -201 1 982 279 0 0 0 chr12 52146146 52146177 -69111353 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 982 927 263 15 5 chr12 52147056 52147262 -69110268 + B3 SINE B2 1 208 -8 1 982 687 160 28 6 chr12 52147262 52147438 -69110092 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 982 1083 43 7 0 chr12 52147979 52148117 -69109413 - B1_Mm SINE Alu 0 147 9 1 982 463 227 54 102 chr12 52147985 52148152 -69109378 - B4A SINE B4 -71 221 63 1 982 282 206 0 0 chr12 52148857 52148920 -69108610 + T-rich Low_complexity Low_complexity 1 63 0 1 982 443 273 97 0 chr12 52148937 52149102 -69108428 + Charlie19a DNA Charlie 166 346 -40 1 982 371 276 83 28 chr12 52149826 52149934 -69107596 + PB1D7 SINE Alu 6 119 -1 1 982 197 132 26 0 chr12 52149934 52149972 -69107558 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 1 982 9109 29 0 0 chr12 52150486 52151482 -69106048 + L1Md_T LINE L1 5587 6582 0 1 982 2270 106 54 25 chr12 52151561 52151929 -69105601 + Lx LINE L1 6265 6643 -11 1 982 810 22 7 55 chr12 52151929 52152074 -69105456 + (TA)n Simple_repeat Simple_repeat 2 139 0 1 982 233 256 0 0 chr12 52152105 52152148 -69105382 - 5S rRNA rRNA -78 43 1 1 982 357 294 48 105 chr12 52153059 52153268 -69104262 - MIRb SINE MIR -67 201 5 1 982 3256 39 0 0 chr12 52153502 52153859 -69103671 - IAPEY2_LTR LTR ERVK 0 357 1 1 982 402 296 72 0 chr12 52154012 52154164 -69103366 + MER5C DNA MER1_type 8 170 -143 1 982 10642 98 0 16 chr12 52154167 52155082 -69102448 + L1_Mus1 LINE L1 4401 5293 -590 1 982 7480 68 30 11 chr12 52155082 52156039 -69101491 + L1Md_F2 LINE L1 5604 6578 -4 1 982 10642 98 0 16 chr12 52156039 52156620 -69100910 + L1_Mus1 LINE L1 5294 5873 -10 1 982 2297 91 198 17 chr12 52156626 52157030 -69100500 + RLTR44C LTR ERVK 1 477 -25 1 982 5920 60 1 1 chr12 52157041 52157731 -69099799 + L1_Mus1 LINE L1 5874 6563 -4 1 982 639 188 172 0 chr12 52158049 52158177 -69099353 + B1_Mur4 SINE Alu 1 150 0 1 982 1415 277 36 33 chr12 52158256 52158679 -69098851 + MT2A LTR ERVL 75 594 -7 1 982 262 372 26 90 chr12 52159823 52160012 -69097518 + Charlie15a DNA MER1_type 21 197 -27 1 982 23 0 0 0 chr12 52160120 52160143 -69097387 + AT_rich Low_complexity Low_complexity 1 23 0 1 982 498 265 34 0 chr12 52160404 52160521 -69097009 + B1F SINE Alu 17 137 -12 1 982 297 0 0 0 chr12 52160528 52160561 -69096969 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1 982 402 219 17 1 chr12 52160810 52160898 -69096632 + MLT1A1 LTR MaLR 295 395 -13 1 982 22 0 0 0 chr12 52161392 52161414 -69096116 + AT_rich Low_complexity Low_complexity 1 22 0 1 982 21 0 0 0 chr12 52161439 52161460 -69096070 + AT_rich Low_complexity Low_complexity 1 21 0 2 982 21 0 0 0 chr12 52162155 52162176 -69095354 + AT_rich Low_complexity Low_complexity 1 21 0 2 982 24 67 0 0 chr12 52162514 52162559 -69094971 + AT_rich Low_complexity Low_complexity 1 45 0 2 982 2809 144 29 11 chr12 52162659 52163107 -69094423 + Lx LINE L1 6190 6645 -9 2 982 198 0 0 0 chr12 52163107 52163129 -69094401 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 982 258 211 39 0 chr12 52163129 52163181 -69094349 - PB1D10 SINE Alu -19 98 45 2 982 423 0 0 0 chr12 52163732 52163779 -69093751 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 982 324 319 89 61 chr12 52164652 52164832 -69092698 - Tigger5 DNA MER2_type -2218 188 4 2 983 450 0 0 0 chr12 52168648 52168698 -69088832 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 2 983 329 304 25 67 chr12 52169210 52169330 -69088200 + PB1D10 SINE Alu 2 116 -1 2 983 271 242 0 0 chr12 52169505 52169571 -69087959 + Lx8 LINE L1 7407 7472 -1 2 983 380 141 185 0 chr12 52169572 52169664 -69087866 + Lx2 LINE L1 6886 6994 -3 2 983 491 45 15 0 chr12 52170162 52170228 -69087302 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 2 983 479 120 28 9 chr12 52171014 52171123 -69086407 + (TA)n Simple_repeat Simple_repeat 2 112 0 2 983 965 279 105 9 chr12 52171123 52171448 -69086082 - Lx8 LINE L1 -148 7325 6970 2 983 302 45 23 0 chr12 52171448 52171492 -69086038 + (TGG)n Simple_repeat Simple_repeat 1 45 0 2 983 204 286 0 0 chr12 52171495 52171607 -69085923 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 983 866 289 4 0 chr12 52171661 52171886 -69085644 - Lx8 LINE L1 -517 6956 6731 2 983 271 46 29 58 chr12 52172540 52172609 -69084921 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 983 865 152 49 28 chr12 52172618 52172760 -69084770 - B1_Mm SINE Alu 0 147 3 2 983 436 304 0 25 chr12 52172858 52172976 -69084554 - B1F2 SINE Alu -33 116 2 2 983 217 284 177 10 chr12 52173091 52173187 -69084343 + MIR SINE MIR 42 153 -109 2 983 516 32 0 0 chr12 52173187 52173249 -69084281 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 2 983 358 250 18 9 chr12 52173641 52173750 -69083780 - PB1D10 SINE Alu -7 110 1 2 983 568 246 115 16 chr12 52173878 52174060 -69083470 + RMER30 DNA MER1_type 2 201 -1 2 983 1133 247 130 10 chr12 52174365 52174718 -69082812 - MTD LTR MaLR -14 405 1 2 983 21 0 0 0 chr12 52175829 52175850 -69081680 + AT_rich Low_complexity Low_complexity 1 21 0 2 983 6455 119 45 5 chr12 52176024 52177214 -69080316 - L1_Mus4 LINE L1 -7 6629 5363 2 983 198 103 0 0 chr12 52178859 52178888 -69078642 + (T)n Simple_repeat Simple_repeat 1 29 0 2 983 380 20 0 20 chr12 52179705 52179755 -69077775 + (TTA)n Simple_repeat Simple_repeat 2 50 0 2 983 458 311 77 53 chr12 52180890 52181175 -69076355 + MLT1D LTR MaLR 214 505 0 2 983 692 325 45 5 chr12 52181176 52181374 -69076156 + B3 SINE B2 2 207 -9 2 983 21 36 0 0 chr12 52182681 52182709 -69074821 + AT_rich Low_complexity Low_complexity 1 28 0 2 983 369 0 0 0 chr12 52183592 52183633 -69073897 + (T)n Simple_repeat Simple_repeat 1 41 0 2 983 461 274 54 39 chr12 52184255 52184384 -69073146 + B4A SINE B4 44 174 -118 2 983 211 330 70 30 chr12 52184310 52184410 -69073120 + PB1D7 SINE Alu 15 118 -2 2 983 270 301 75 26 chr12 52184532 52184649 -69072881 + MLT1H LTR MaLR 79 199 -350 2 983 535 261 22 0 chr12 52184991 52185129 -69072401 - RMER15 LTR ERVL -43 532 392 2 983 308 292 156 62 chr12 52185517 52185696 -69071834 + B4A SINE B4 97 292 0 2 983 4585 71 0 0 chr12 52185816 52186368 -69071162 - L1_Mus1 LINE L1 -1 6566 6015 2 983 1108 201 4 57 chr12 52186426 52186653 -69070877 + B3 SINE B2 2 216 0 2 983 724 282 91 55 chr12 52187228 52187558 -69069972 + LTR37A LTR ERV1 40 381 -45 2 983 241 328 67 39 chr12 52187888 52188066 -69069464 + LTR16E2 LTR ERVL 377 559 -9 2 983 1307 249 94 12 chr12 52188102 52188444 -69069086 - ORR1D2 LTR MaLR 0 370 1 2 983 385 298 18 0 chr12 52188477 52188591 -69068939 + B3 SINE B2 6 121 -95 2 983 405 0 0 0 chr12 52188648 52188693 -69068837 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 983 26 0 0 0 chr12 52188697 52188723 -69068807 + AT_rich Low_complexity Low_complexity 1 26 0 2 983 22 70 0 0 chr12 52189033 52189076 -69068454 + AT_rich Low_complexity Low_complexity 1 43 0 2 983 711 307 55 65 chr12 52189086 52189351 -69068179 + B4A SINE B4 2 271 -21 2 983 207 0 0 0 chr12 52189351 52189374 -69068156 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 983 711 307 55 65 chr12 52189374 52189401 -69068129 + B4A SINE B4 272 291 -1 2 983 24 0 0 0 chr12 52189998 52190022 -69067508 + AT_rich Low_complexity Low_complexity 1 24 0 2 983 185 300 112 0 chr12 52192096 52192176 -69065354 - MIRb SINE MIR -85 183 95 2 983 1047 205 0 46 chr12 52192178 52192372 -69065158 + B3 SINE B2 3 187 -29 2 983 1266 90 0 0 chr12 52192525 52192703 -69064827 + (GAA)n Simple_repeat Simple_repeat 2 179 0 2 983 271 386 71 7 chr12 52193055 52193209 -69064321 + MIRc SINE MIR 30 193 -75 2 983 1624 296 33 4 chr12 52193730 52194209 -69063321 + Lx8 LINE L1 6621 7113 -360 2 983 22 0 0 0 chr12 52194664 52194686 -69062844 + AT_rich Low_complexity Low_complexity 1 22 0 2 983 272 241 63 0 chr12 52195591 52195670 -69061860 + PB1D7 SINE Alu 37 120 0 2 983 969 259 125 27 chr12 52195858 52196195 -69061335 + MTEa LTR MaLR 6 375 -4 2 983 203 204 36 36 chr12 52197311 52197367 -69060163 - L3 LINE CR1 -3 4486 4431 2 983 270 304 63 0 chr12 52197547 52197626 -69059904 - MER96 DNA hAT -1 174 91 2 983 383 324 11 17 chr12 52198097 52198276 -69059254 + L1MA5 LINE L1 6009 6186 -114 2 983 1211 234 129 24 chr12 52198685 52199026 -69058504 + MTEa LTR MaLR 3 379 0 2 983 26 0 0 0 chr12 52199067 52199093 -69058437 + AT_rich Low_complexity Low_complexity 1 26 0 2 983 1188 136 38 0 chr12 52199148 52199332 -69058198 - B2_Mm2 SINE B2 -3 192 2 2 983 497 234 45 36 chr12 52199569 52199680 -69057850 + PB1D10 SINE Alu 3 114 -3 2 983 844 275 172 95 chr12 52199948 52200057 -69057473 + MER73 LTR ERVL 3 99 -545 2 983 935 255 20 10 chr12 52200057 52200259 -69057271 - B3 SINE B2 -10 206 3 2 983 844 275 172 95 chr12 52200259 52200643 -69056887 + MER73 LTR ERVL 100 534 -110 2 983 1994 149 0 3 chr12 52200664 52200973 -69056557 + ORR1C1 LTR MaLR 71 378 0 2 983 1262 15 0 0 chr12 52201627 52201763 -69055767 + B1_Mm SINE Alu 1 136 -11 2 983 246 32 0 0 chr12 52201763 52201794 -69055736 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 983 316 316 53 13 chr12 52202047 52202198 -69055332 - MLT1J1 LTR MaLR -287 157 1 2 983 702 221 8 0 chr12 52203892 52204019 -69053511 + B1_Mur2 SINE Alu 2 129 -20 2 983 404 353 112 54 chr12 52204914 52205468 -69052062 + L1MC5 LINE L1 6718 7303 -658 2 983 357 109 0 0 chr12 52205805 52205860 -69051670 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2 983 28 0 0 0 chr12 52205981 52206009 -69051521 + AT_rich Low_complexity Low_complexity 1 28 0 2 983 21 71 0 0 chr12 52206036 52206078 -69051452 + AT_rich Low_complexity Low_complexity 1 42 0 2 983 452 220 0 0 chr12 52206100 52206200 -69051330 - L1M2 LINE L1 -507 5793 5694 2 983 194 91 30 0 chr12 52208350 52208383 -69049147 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 2 983 678 154 0 0 chr12 52208449 52208579 -69048951 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 983 234 0 0 0 chr12 52210114 52210140 -69047390 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 983 29 47 0 0 chr12 52210650 52210693 -69046837 + AT_rich Low_complexity Low_complexity 1 43 0 2 983 183 275 0 0 chr12 52210781 52210821 -69046709 - L2c LINE L2 -86 3301 3262 2 983 738 163 14 0 chr12 52210826 52211050 -69046480 + (TG)n Simple_repeat Simple_repeat 1 227 0 2 983 465 230 10 0 chr12 52211894 52211994 -69045536 + RSINE1 SINE B4 3 103 -62 2 983 2014 151 3 79 chr12 52212013 52212278 -69045252 - RLTR14 LTR ERV1 -34 348 112 2 983 1335 27 0 7 chr12 52212278 52212426 -69045104 - B1_Mus1 SINE Alu 0 148 2 2 983 2014 151 3 79 chr12 52212426 52212528 -69045002 - RLTR14 LTR ERV1 -271 111 9 2 983 878 257 28 14 chr12 52214442 52214655 -69042875 + B3 SINE B2 1 216 0 2 983 25 0 0 0 chr12 52214776 52214801 -69042729 + AT_rich Low_complexity Low_complexity 1 25 0 2 983 1389 283 102 64 chr12 52214807 52215372 -69042158 + Lx6 LINE L1 6253 7134 -326 2 983 4174 47 19 4 chr12 52215372 52215859 -69041671 - L1Md_F3 LINE L1 0 6584 6091 2 983 1389 282 71 79 chr12 52215859 52216199 -69041331 + Lx6 LINE L1 7135 7459 -1 2 983 516 302 98 115 chr12 52216643 52216855 -69040675 + ORR1E LTR MaLR 8 201 -158 2 983 2213 162 19 102 chr12 52216855 52217336 -69040194 + BGLII_B LTR ERVK 1 441 0 2 983 516 302 98 115 chr12 52217336 52217479 -69040051 + ORR1E LTR MaLR 202 357 -2 2 983 236 386 68 9 chr12 52217637 52217859 -69039671 + L4 LINE RTE 40 274 -1755 2 983 1926 164 32 82 chr12 52220351 52220755 -69036775 + ORR1C2 LTR MaLR 1 384 0 2 983 811 196 39 19 chr12 52220919 52221075 -69036455 + B3A SINE B2 1 159 -39 2 983 321 89 0 0 chr12 52221086 52221131 -69036399 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 983 260 333 0 0 chr12 52221153 52221216 -69036314 + ID2 SINE ID 5 67 -16 2 983 275 333 72 49 chr12 52221713 52222060 -69035470 - HAL1 LINE L1 -1046 1461 1107 2 983 467 283 37 37 chr12 52222809 52222847 -69034683 - B2_Mm2 SINE B2 -4 191 152 2 983 430 91 26 0 chr12 52222847 52222924 -69034606 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 983 630 220 38 45 chr12 52222924 52223076 -69034454 - B3A SINE B2 -44 151 1 2 983 1477 263 22 32 chr12 52223155 52223563 -69033967 - MTD LTR MaLR -15 404 1 3 983 195 42 0 0 chr12 52223752 52223776 -69033754 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 3 983 676 308 79 28 chr12 52224186 52224400 -69033130 + B4A SINE B4 2 226 -66 3 983 297 294 0 40 chr12 52224463 52224615 -69032915 + (CA)n Simple_repeat Simple_repeat 2 147 0 3 983 243 243 112 105 chr12 52224814 52224966 -69032564 - L1MA10 LINE L1 0 6334 6182 3 983 337 298 104 52 chr12 52225075 52225305 -69032225 - ORR1E LTR MaLR 0 359 118 3 983 1269 230 177 108 chr12 52225330 52225828 -69031702 - MT2A LTR ERVL 0 533 2 3 983 431 291 77 6 chr12 52225992 52226175 -69031355 - L1ME1 LINE L1 -298 5881 5686 3 983 627 224 171 6 chr12 52226192 52226402 -69031128 + MLT1-int LTR MaLR 2 250 -1239 3 983 7705 82 27 4 chr12 52226449 52227827 -69029703 + L1_Mus3 LINE L1 5218 6633 -5 3 983 207 69 0 0 chr12 52227830 52227859 -69029671 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 983 346 308 12 93 chr12 52227915 52228076 -69029454 + MLT1-int LTR MaLR 480 627 -744 3 983 315 0 0 0 chr12 52228426 52228461 -69029069 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 983 450 0 0 0 chr12 52228461 52228510 -69029020 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 983 4053 190 42 37 chr12 52228650 52229525 -69028005 - RMER1A Other Other -4 1026 147 3 983 377 240 57 48 chr12 52229528 52229633 -69027897 - RMER1A Other Other -762 268 163 3 983 313 219 15 15 chr12 52229719 52229784 -69027746 + ID4 SINE ID 16 80 -3 3 983 749 220 0 0 chr12 52229786 52229927 -69027603 - RMER1A Other Other -889 141 1 3 983 362 297 67 102 chr12 52229936 52230161 -69027369 - Lx9 LINE L1 -486 7158 6942 3 983 1736 278 16 9 chr12 52230168 52230618 -69026912 + Lx9 LINE L1 6481 6933 -711 3 983 1240 55 7 0 chr12 52230625 52230771 -69026759 - B1_Mus2 SINE Alu 0 147 1 3 983 372 243 48 75 chr12 52230843 52231030 -69026500 - Lx7 LINE L1 0 7696 7515 3 983 5672 255 37 17 chr12 52231048 52232496 -69025034 - Lx7 LINE L1 -338 7358 5883 3 983 5664 113 32 36 chr12 52232505 52233603 -69023927 + L1VL2 LINE L1 96 1206 -2409 3 983 5101 97 1 7 chr12 52233610 52234328 -69023202 + L1VL2 LINE L1 1776 2489 -1126 3 983 17033 156 25 29 chr12 52235982 52236074 -69021456 + Lx LINE L1 2784 2882 -3001 3 983 1209 82 0 7 chr12 52236074 52236221 -69021309 + B1_Mus2 SINE Alu 2 147 0 3 983 17033 146 26 31 chr12 52236221 52240023 -69017507 + Lx LINE L1 2883 6649 -5 3 983 1235 240 30 10 chr12 52240019 52240322 -69017208 - Lx7 LINE L1 -1789 5907 5599 3 983 4568 179 228 19 chr12 52240346 52241218 -69016312 - L1_Mur3 LINE L1 -2721 3159 2055 3 983 360 0 0 0 chr12 52241218 52241258 -69016272 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 983 4568 179 228 19 chr12 52241258 52241664 -69015866 - L1_Mur3 LINE L1 -3826 2054 1614 3 983 21 0 0 0 chr12 52241911 52241932 -69015598 + AT_rich Low_complexity Low_complexity 1 21 0 3 983 260 259 204 40 chr12 52243122 52243323 -69014207 - MLT1E1 LTR MaLR -13 641 408 3 983 253 392 35 35 chr12 52243290 52243491 -69014039 - MLT1E1 LTR MaLR -278 271 71 3 983 288 0 0 0 chr12 52243647 52243679 -69013851 + (A)n Simple_repeat Simple_repeat 1 32 0 3 983 262 309 100 47 chr12 52243855 52244045 -69013485 + MIRc SINE MIR 20 219 -49 3 983 299 283 108 0 chr12 52244889 52245009 -69012521 + MIR SINE MIR 98 230 -32 3 983 235 311 0 39 chr12 52245316 52245393 -69012137 - MER20 DNA MER1_type -144 75 2 3 983 1868 246 169 39 chr12 52245493 52245700 -69011830 - L1MB3 LINE L1 -2 6181 5927 3 983 3563 32 0 7 chr12 52245700 52246107 -69011423 + L1Md_F2 LINE L1 6165 6568 -14 3 983 1868 247 168 39 chr12 52246107 52246728 -69010802 - L1MB3 LINE L1 -257 5926 5228 3 983 453 19 0 0 chr12 52246728 52246782 -69010748 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 983 395 280 142 20 chr12 52246782 52246849 -69010681 - L1MB3 LINE L1 -913 5227 5155 3 983 1338 296 54 46 chr12 52246969 52247447 -69010083 - MLT1D LTR MaLR -15 490 9 3 983 22 35 0 0 chr12 52247809 52247838 -69009692 + AT_rich Low_complexity Low_complexity 1 29 0 3 983 207 0 0 0 chr12 52249456 52249479 -69008051 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 983 200 114 29 0 chr12 52251742 52251777 -69005753 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 983 248 203 62 0 chr12 52251979 52252043 -69005487 + L1_Mur3 LINE L1 5273 5340 -540 3 983 4491 63 0 7 chr12 52252254 52252794 -69004736 + L1Md_F2 LINE L1 6028 6563 -19 3 983 1049 70 28 0 chr12 52252797 52252939 -69004591 + L1Md_F2 LINE L1 5440 5585 -298 3 983 8787 43 0 0 chr12 52252940 52253933 -69003597 + L1Md_F2 LINE L1 5587 6579 -3 3 983 241 246 0 0 chr12 52253948 52254017 -69003513 + A-rich Low_complexity Low_complexity 1 69 0 3 983 353 309 70 23 chr12 52254943 52255080 -69002450 - MLT1H2 LTR MaLR -302 187 47 3 983 338 276 23 0 chr12 52255903 52255990 -69001540 + 5S rRNA rRNA 1 89 -32 3 983 23 33 0 0 chr12 52257250 52257280 -69000250 + AT_rich Low_complexity Low_complexity 1 30 0 3 983 197 286 253 12 chr12 52257911 52258077 -68999453 - MIR SINE MIR -8 254 49 3 983 6841 106 54 9 chr12 52258973 52259953 -68997577 + Lx3A LINE L1 5945 6968 -13 3 983 222 37 0 0 chr12 52259953 52259980 -68997550 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 983 287 250 0 0 chr12 52260035 52260091 -68997439 - B1F1 SINE Alu -26 123 68 3 983 381 360 103 28 chr12 52260403 52260829 -68996701 - L2 LINE L2 -429 2990 2533 3 983 315 0 0 0 chr12 52261553 52261588 -68995942 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 983 420 89 0 0 chr12 52263080 52263136 -68994394 + L1Md_F2 LINE L1 5724 5779 -803 3 983 8154 80 2 0 chr12 52263134 52264243 -68993287 + L1_Mus3 LINE L1 5525 6635 -3 3 983 733 255 19 10 chr12 52264388 52264594 -68992936 + L1_Mur3 LINE L1 5299 5506 -374 3 983 3540 130 47 35 chr12 52264594 52265256 -68992274 + RMER6A LTR ERVK 1 670 -86 3 983 2096 55 84 0 chr12 52265256 52265529 -68992001 + L1_Mus3 LINE L1 5710 6005 -633 3 983 2847 316 83 15 chr12 52265522 52266635 -68990895 + Lx8 LINE L1 6279 7466 -7 3 983 228 86 0 0 chr12 52266855 52266890 -68990640 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 983 1076 194 47 37 chr12 52268279 52268493 -68989037 + B3 SINE B2 1 216 0 3 983 432 37 0 0 chr12 52268582 52268636 -68988894 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 983 180 0 0 0 chr12 52268638 52268658 -68988872 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 983 636 266 84 15 chr12 52268680 52268882 -68988648 + Lx6 LINE L1 7230 7445 -15 3 983 24 53 0 0 chr12 52268882 52268920 -68988610 + AT_rich Low_complexity Low_complexity 1 38 0 3 983 342 0 0 0 chr12 52268936 52268974 -68988556 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 983 36281 42 1 6 chr12 52269056 52274393 -68983137 + L1Md_T LINE L1 353 5589 -297 3 983 9554 7 0 0 chr12 52274393 52275421 -68982109 + L1Md_T LINE L1 5590 6585 0 3 983 351 0 0 0 chr12 52276273 52276312 -68981218 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 983 261 0 0 0 chr12 52277347 52277376 -68980154 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 983 299 25 25 0 chr12 52277376 52277416 -68980114 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 3 983 470 57 14 0 chr12 52277428 52277498 -68980032 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 983 1210 89 0 0 chr12 52279740 52279886 -68977644 + B1_Mus1 SINE Alu 2 147 -1 3 983 524 160 10 0 chr12 52279892 52279992 -68977538 + GA-rich Low_complexity Low_complexity 3 103 0 3 983 474 323 19 37 chr12 52280046 52280207 -68977323 - RSINE1 SINE B4 -2 163 6 3 983 351 0 0 0 chr12 52280208 52280247 -68977283 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 983 259 254 70 0 chr12 52280932 52281003 -68976527 + MER34 LTR ERV1 385 460 -82 3 983 587 281 35 1 chr12 52281106 52281269 -68976261 - MTEb LTR MaLR 0 379 212 3 983 8380 45 16 0 chr12 52281482 52282448 -68975082 + L1Md_F2 LINE L1 5602 6582 0 3 983 5727 205 53 70 chr12 52282448 52283930 -68973600 + Lx9 LINE L1 6186 7642 -2 3 983 208 181 11 88 chr12 52284061 52284152 -68973378 + A-rich Low_complexity Low_complexity 3 86 0 3 983 459 262 234 0 chr12 52284153 52284367 -68973163 - Lx7 LINE L1 -378 7318 7055 3 983 207 291 37 25 chr12 52284950 52285031 -68972499 + MIRc SINE MIR 51 132 -136 3 983 297 260 39 68 chr12 52285349 52285452 -68972078 + ID_B1 SINE B4 109 208 -16 3 983 536 215 190 0 chr12 52285528 52285649 -68971881 + B1_Mur1 SINE Alu 1 144 -5 3 983 306 0 0 0 chr12 52285715 52285749 -68971781 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 983 908 204 14 34 chr12 52285749 52285911 -68971619 - B3A SINE B2 -13 203 43 3 983 1673 186 67 17 chr12 52285911 52286267 -68971263 - ORR1D1 LTR MaLR 0 374 1 3 983 908 201 11 33 chr12 52286267 52286309 -68971221 - B3A SINE B2 -155 43 2 3 983 641 180 0 6 chr12 52287267 52287440 -68970090 + (CA)n Simple_repeat Simple_repeat 2 173 0 3 983 1237 62 0 7 chr12 52290222 52290369 -68967161 + B1_Mus2 SINE Alu 2 147 0 3 983 474 18 0 0 chr12 52290926 52290981 -68966549 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 983 187 391 18 9 chr12 52291544 52291655 -68965875 - MIRb SINE MIR -139 129 18 3 983 237 372 0 0 chr12 52293315 52293409 -68964121 + L2a LINE L2 3324 3417 -9 3 983 291 329 162 35 chr12 52293924 52294066 -68963464 + MER20 DNA MER1_type 1 160 -59 3 983 969 294 33 63 chr12 52294732 52295033 -68962497 - B4A SINE B4 0 292 1 3 983 503 306 61 6 chr12 52297406 52297587 -68959943 + LTR16C LTR ERVL 197 387 -102 3 984 353 306 18 154 chr12 52297886 52298106 -68959424 - MLT1B LTR MaLR -70 320 131 3 984 295 287 69 0 chr12 52298108 52298195 -68959335 + ORR1D1 LTR MaLR 5 97 -277 3 984 471 296 78 0 chr12 52298670 52298785 -68958745 - RSINE1 SINE B4 -39 126 3 3 984 4996 63 0 11 chr12 52299035 52299644 -68957886 + L1Md_F2 LINE L1 5979 6580 -2 3 984 330 87 0 0 chr12 52299656 52299702 -68957828 + (A)n Simple_repeat Simple_repeat 1 46 0 3 984 759 243 27 193 chr12 52300326 52300840 -68956690 - RLTR23 LTR ERV1 0 430 2 3 984 455 353 90 11 chr12 52300964 52301319 -68956211 + L2a LINE L2 2335 2717 -702 3 984 250 320 0 60 chr12 52301351 52301434 -68956096 - ID SINE ID -144 80 3 3 984 587 322 154 33 chr12 52301436 52301928 -68955602 + L2a LINE L2 2750 3300 -126 3 984 315 0 0 0 chr12 52301958 52301993 -68955537 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 984 1825 305 76 35 chr12 52302025 52302305 -68955225 - Lx8 LINE L1 -467 7006 6717 4 984 1476 85 27 0 chr12 52302305 52302493 -68955037 - B2_Mm2 SINE B2 -2 193 1 4 984 1825 305 76 35 chr12 52302493 52302984 -68954546 - Lx8 LINE L1 -757 6716 6203 4 984 549 30 0 0 chr12 52302987 52303054 -68954476 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 4 984 521 326 144 22 chr12 52303056 52303452 -68954078 + Lx8 LINE L1 6991 7444 -29 4 984 2590 168 122 2 chr12 52303580 52304086 -68953444 - Lx5 LINE L1 -634 6416 5850 4 984 4015 158 35 5 chr12 52304091 52304716 -68952814 + Lx5 LINE L1 6404 7047 -3 4 984 328 269 32 32 chr12 52305060 52305183 -68952347 + LTR37B LTR ERV1 346 468 0 4 984 26612 22 0 1 chr12 52305330 52309090 -68948440 + L1Md_T LINE L1 2849 6582 0 4 984 412 304 137 15 chr12 52309338 52309372 -68948158 - MLT2B3 LTR ERVL 0 554 512 4 984 464 0 18 0 chr12 52309372 52309428 -68948102 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 984 546 16 0 0 chr12 52309428 52309490 -68948040 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 984 412 304 137 15 chr12 52309490 52309651 -68947879 - MLT2B3 LTR ERVL -43 511 335 4 984 633 230 154 21 chr12 52309655 52309895 -68947635 - RLTR10A LTR ERVK 0 411 140 4 984 334 307 85 101 chr12 52310048 52310247 -68947283 - MTEa LTR MaLR -183 196 1 4 984 3049 77 28 8 chr12 52310309 52310703 -68946827 + L1Md_F2 LINE L1 6181 6582 0 4 984 3666 127 54 30 chr12 52311078 52311637 -68945893 + Lx3C LINE L1 6405 6976 0 4 984 1522 177 30 0 chr12 52312046 52312311 -68945219 + ORR1C1 LTR MaLR 1 273 -105 4 984 336 291 140 22 chr12 52312311 52312440 -68945090 - L1M1 LINE L1 -568 5735 5583 4 984 865 156 30 0 chr12 52312440 52312575 -68944955 + B1_Mur3 SINE Alu 1 139 -10 4 984 336 291 140 22 chr12 52312575 52312624 -68944906 - L1M1 LINE L1 -721 5582 5536 4 984 3204 29 0 6 chr12 52313722 52314070 -68943460 + ORR1A1 LTR MaLR 1 346 0 4 984 720 0 0 0 chr12 52314414 52314494 -68943036 + (TTC)n Simple_repeat Simple_repeat 2 81 0 4 984 22 0 0 0 chr12 52314636 52314658 -68942872 + AT_rich Low_complexity Low_complexity 1 22 0 4 984 1168 45 0 0 chr12 52315599 52315733 -68941797 + B1_Mm SINE Alu 5 138 -9 4 984 194 0 39 0 chr12 52315733 52315759 -68941771 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 984 1105 276 83 13 chr12 52316951 52317295 -68940235 + MTE2b LTR MaLR 1 420 -1 4 984 1652 53 0 0 chr12 52317296 52317485 -68940045 + B2_Mm1a SINE B2 1 189 -4 4 984 2452 105 12 0 chr12 52317491 52317814 -68939716 + ORR1A4 LTR MaLR 1 327 -2 4 984 281 214 165 12 chr12 52318061 52318146 -68939384 + MER34 LTR ERV1 378 475 -67 4 984 551 296 115 115 chr12 52318567 52318672 -68938858 + LTR48B LTR ERV1 1 128 -516 4 984 198 0 0 0 chr12 52318672 52318694 -68938836 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 984 551 296 115 115 chr12 52318694 52319206 -68938324 + LTR48B LTR ERV1 129 617 -27 4 984 540 86 0 0 chr12 52319210 52319291 -68938239 + L1Md_T LINE L1 6500 6580 -2 4 984 213 39 0 0 chr12 52319303 52319329 -68938201 + (A)n Simple_repeat Simple_repeat 1 26 0 4 984 396 292 162 7 chr12 52320021 52320169 -68937361 + MER5A DNA MER1_type 1 171 -18 4 984 685 283 44 44 chr12 52320992 52321221 -68936309 - MTEa LTR MaLR -8 371 143 4 984 738 253 6 17 chr12 52321226 52321399 -68936131 - MTEa LTR MaLR -208 171 1 4 984 22 35 0 0 chr12 52321418 52321447 -68936083 + AT_rich Low_complexity Low_complexity 1 29 0 4 984 16571 158 112 13 chr12 52321484 52325292 -68932238 + L1_Mus3 LINE L1 663 4879 -1007 4 984 7737 36 4 1 chr12 52325316 52326232 -68931298 - L1Md_F2 LINE L1 0 6582 5664 4 984 2641 27 0 0 chr12 52326227 52326523 -68931007 + L1Md_F2 LINE L1 5400 5695 -188 4 984 7765 93 13 2 chr12 52326520 52328277 -68929253 + L1_Mus3 LINE L1 4862 6638 0 4 984 458 271 104 15 chr12 52328266 52328536 -68928994 + L1MB8 LINE L1 4266 4559 -1587 4 984 2983 208 49 7 chr12 52328553 52329129 -68928401 - Lx6 LINE L1 -4 7456 6857 4 984 1574 249 41 26 chr12 52329601 52329640 -68927890 - L1MA8 LINE L1 -326 5965 5928 4 984 3675 82 4 17 chr12 52329640 52330121 -68927409 - MT2C_Mm LTR ERVL 0 475 1 4 984 1574 249 41 26 chr12 52330121 52330573 -68926957 - L1MA8 LINE L1 -364 5927 5467 4 984 378 0 0 0 chr12 52331140 52331182 -68926348 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 984 3770 97 20 8 chr12 52331265 52331776 -68925754 - L1_Mus3 LINE L1 0 6638 6122 4 984 901 275 66 72 chr12 52331936 52332307 -68925223 + L1MB8 LINE L1 5209 5594 -584 4 984 872 96 32 0 chr12 52332307 52332432 -68925098 + L1_Mus1 LINE L1 6439 6567 0 4 984 901 278 87 119 chr12 52332432 52333001 -68924529 + L1MB8 LINE L1 5595 6120 -58 4 984 819 313 92 74 chr12 52333002 52333268 -68924262 + MT2A LTR ERVL 1 251 -282 4 984 252 86 0 0 chr12 52333268 52333303 -68924227 + (ATG)n Simple_repeat Simple_repeat 2 36 0 4 984 819 313 92 74 chr12 52333303 52333560 -68923970 + MT2A LTR ERVL 252 533 0 4 984 741 294 106 54 chr12 52333938 52334269 -68923261 + MLT2B1 LTR ERVL 14 361 -159 4 984 386 251 113 54 chr12 52335525 52335710 -68921820 - B3A SINE B2 -2 196 1 4 984 756 277 115 70 chr12 52335711 52336041 -68921489 + MER31A LTR ERV1 20 364 -121 4 984 235 302 107 54 chr12 52336526 52336694 -68920836 - MIRc SINE MIR -8 260 84 4 984 242 56 0 27 chr12 52337455 52337492 -68920038 + (TCC)n Simple_repeat Simple_repeat 2 37 0 4 984 282 266 62 25 chr12 52338252 52338333 -68919197 + 4.5SRNA scRNA scRNA 1 84 -10 4 984 215 291 168 37 chr12 52338333 52338359 -68919171 + B1F2 SINE Alu 2 122 -27 4 984 748 270 6 35 chr12 52338360 52338529 -68919001 + RSINE1 SINE B4 2 165 0 4 984 420 71 0 0 chr12 52338537 52338593 -68918937 + (TGG)n Simple_repeat Simple_repeat 1 56 0 4 984 457 232 125 0 chr12 52338656 52338768 -68918762 + B1_Mur1 SINE Alu 2 127 -22 4 984 333 0 0 0 chr12 52338770 52338807 -68918723 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 984 1388 37 0 0 chr12 52338839 52339003 -68918527 + B2_Mm2 SINE B2 1 164 -31 4 984 504 0 0 0 chr12 52339003 52339059 -68918471 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 4 984 1163 126 15 35 chr12 52339059 52339091 -68918439 + B2_Mm1t SINE B2 167 193 0 4 984 277 367 75 48 chr12 52339648 52339943 -68917587 - MER115 DNA Tip100 -63 630 328 4 984 4022 37 0 18 chr12 52340342 52340844 -68916686 - L1Md_F2 LINE L1 -1 6581 6089 4 984 1541 44 29 0 chr12 52340844 52341049 -68916481 + L1Md_F2 LINE L1 5877 6087 -495 4 984 430 284 105 33 chr12 52341760 52341913 -68915617 + RSINE1 SINE B4 2 165 0 4 984 24 67 0 0 chr12 52341914 52341959 -68915571 + AT_rich Low_complexity Low_complexity 1 45 0 4 984 443 232 0 40 chr12 52341976 52342085 -68915445 + PB1 SINE Alu 24 115 -2 4 984 381 202 60 10 chr12 52343195 52343295 -68914235 + PB1D7 SINE Alu 7 111 -9 4 984 271 170 0 102 chr12 52343248 52343307 -68914223 + ID_B1 SINE B4 172 224 0 4 984 250 225 29 29 chr12 52343465 52343570 -68913960 + (TA)n Simple_repeat Simple_repeat 2 106 0 4 984 594 315 62 42 chr12 52343796 52344123 -68913407 + MLT1E1A LTR MaLR 258 645 -35 4 984 21 82 0 0 chr12 52344359 52344408 -68913122 + AT_rich Low_complexity Low_complexity 1 49 0 4 984 278 194 172 0 chr12 52344800 52344893 -68912637 + MER110A LTR ERV1 1 109 -359 4 984 1247 196 112 49 chr12 52345066 52345137 -68912393 - ORR1D2 LTR MaLR 0 370 302 4 984 1107 30 0 22 chr12 52345137 52345273 -68912257 + B1_Mus1 SINE Alu 1 133 -15 4 984 1247 196 112 49 chr12 52345273 52345549 -68911981 - ORR1D2 LTR MaLR -69 301 1 4 984 246 32 0 0 chr12 52345593 52345624 -68911906 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 984 1420 70 5 0 chr12 52345749 52345934 -68911596 - B2_Mm1a SINE B2 -6 187 2 4 984 426 114 0 0 chr12 52346216 52346286 -68911244 + (TCC)n Simple_repeat Simple_repeat 3 72 0 4 984 1732 195 63 17 chr12 52346411 52346761 -68910769 + ORR1D1 LTR MaLR 1 366 -8 4 984 766 193 53 0 chr12 52347429 52347579 -68909951 + RSINE1 SINE B4 4 161 -4 4 984 1431 277 107 80 chr12 52347734 52347794 -68909736 + L1MC LINE L1 2141 2206 -3940 4 984 261 0 0 0 chr12 52347794 52347823 -68909707 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 984 1431 277 107 80 chr12 52347823 52348887 -68908643 + L1MC LINE L1 2207 3295 -2851 4 984 414 0 0 0 chr12 52348887 52348933 -68908597 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 984 1431 277 107 80 chr12 52348933 52349177 -68908353 + L1MC LINE L1 3296 3546 -2600 4 984 1104 261 202 10 chr12 52349178 52349469 -68908061 + L1MC LINE L1 3816 4143 -2003 4 984 686 12 12 0 chr12 52349469 52349552 -68907978 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 4 984 1104 261 202 10 chr12 52349552 52349969 -68907561 + L1MC LINE L1 4144 4659 -1487 4 984 1094 95 0 22 chr12 52350149 52350332 -68907198 + (TTC)n Simple_repeat Simple_repeat 2 180 0 4 984 360 165 51 10 chr12 52350332 52350430 -68907100 + CT-rich Low_complexity Low_complexity 6 107 0 4 984 849 256 80 49 chr12 52350514 52351003 -68906527 + L1MC LINE L1 4663 5166 -980 4 984 430 278 72 107 chr12 52351285 52351631 -68905899 + MER110A LTR ERV1 93 426 -42 4 984 865 217 0 13 chr12 52351634 52351788 -68905742 + B3 SINE B2 1 152 -64 4 984 248 228 35 0 chr12 52352365 52352422 -68905108 - ID SINE ID -157 67 9 4 984 233 258 0 88 chr12 52352474 52352542 -68904988 + Charlie13a DNA Charlie 1168 1229 -285 4 984 325 317 27 34 chr12 52353292 52353439 -68904091 + HAL1 LINE L1 510 655 -1852 4 984 225 0 0 0 chr12 52353491 52353516 -68904014 + (A)n Simple_repeat Simple_repeat 1 25 0 4 984 222 153 26 53 chr12 52353691 52353767 -68903763 + T-rich Low_complexity Low_complexity 5 78 0 4 984 844 278 32 9 chr12 52353769 52353987 -68903543 - MTEa LTR MaLR -66 313 91 4 984 250 326 68 79 chr12 52354434 52354703 -68902827 + L2c LINE L2 3143 3387 0 4 984 1490 200 83 63 chr12 52354779 52355190 -68902340 - MTD LTR MaLR 0 419 1 4 984 25 0 0 0 chr12 52355761 52355786 -68901744 + AT_rich Low_complexity Low_complexity 1 25 0 4 984 441 0 0 0 chr12 52355891 52355940 -68901590 + (TTC)n Simple_repeat Simple_repeat 2 50 0 4 984 477 0 0 0 chr12 52355940 52355993 -68901537 + (CTA)n Simple_repeat Simple_repeat 2 54 0 4 984 687 277 42 11 chr12 52356111 52356301 -68901229 - B3A SINE B2 -2 196 1 4 984 23 0 0 0 chr12 52356880 52356903 -68900627 + AT_rich Low_complexity Low_complexity 1 23 0 4 984 1367 241 96 0 chr12 52358220 52358565 -68898965 + MTE2b LTR MaLR 1 378 -1 4 984 677 155 8 0 chr12 52358641 52358770 -68898760 + G-rich Low_complexity Low_complexity 3 132 0 4 984 23 0 0 0 chr12 52359592 52359615 -68897915 + AT_rich Low_complexity Low_complexity 1 23 0 5 984 307 257 76 98 chr12 52360301 52360525 -68897005 + Lx9 LINE L1 7401 7619 -25 5 984 262 327 29 9 chr12 52361103 52361208 -68896322 - MER63C DNA AcHobo -541 389 283 5 984 21 0 0 0 chr12 52361668 52361689 -68895841 + AT_rich Low_complexity Low_complexity 1 21 0 5 984 370 297 113 25 chr12 52361981 52362140 -68895390 - MTD LTR MaLR -246 173 1 5 984 465 76 0 0 chr12 52362319 52362385 -68895145 + (A)n Simple_repeat Simple_repeat 1 66 0 5 984 2948 192 29 19 chr12 52362661 52363250 -68894280 + Lx2B LINE L1 6387 6981 -19 5 984 342 0 0 0 chr12 52363660 52363698 -68893832 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 984 2288 158 49 23 chr12 52364473 52364899 -68892631 + RLTR17 LTR ERVK 208 594 -98 5 984 1380 221 64 47 chr12 52364899 52365368 -68892162 + RMER3D-int LTR ERVK 1 477 -2365 5 984 6567 185 39 46 chr12 52365509 52367155 -68890375 + RMER3D-int LTR ERVK 1015 2648 -194 5 984 840 71 0 0 chr12 52367160 52367272 -68890258 - B1_Mus1 SINE Alu -2 146 35 5 984 512 215 13 51 chr12 52367273 52367430 -68890100 + RMER3D-int LTR ERVK 2641 2791 -51 5 984 872 215 5 0 chr12 52367443 52367634 -68889896 + L1_Mur3 LINE L1 5594 5785 -95 5 984 1377 168 49 0 chr12 52367638 52367882 -68889648 + Lx7 LINE L1 6701 6956 -740 5 984 423 298 81 43 chr12 52367902 52368088 -68889442 - RMER2 LTR ERV1 -4 563 371 5 984 266 190 10 194 chr12 52368319 52368417 -68889113 - MTC LTR MaLR -323 84 5 5 984 26 74 0 0 chr12 52368417 52368471 -68889059 + AT_rich Low_complexity Low_complexity 1 54 0 5 984 238 213 16 16 chr12 52368607 52368669 -68888861 - RMER2 LTR ERV1 0 567 506 5 984 1691 226 13 90 chr12 52369526 52370245 -68887285 + Lx8 LINE L1 3900 4542 -1598 5 984 623 236 43 7 chr12 52370285 52370337 -68887193 - B1_Mur3 SINE Alu -2 147 93 5 984 579 29 0 0 chr12 52370337 52370406 -68887124 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 984 623 236 43 7 chr12 52370406 52370494 -68887036 - B1_Mur3 SINE Alu -57 92 2 5 984 5220 198 66 29 chr12 52370494 52371959 -68885571 + Lx8 LINE L1 4474 6028 -1616 5 984 951 244 9 64 chr12 52371963 52372182 -68885348 - ORR1D-int LTR MaLR -513 857 651 5 984 642 190 8 0 chr12 52372178 52372299 -68885231 + ORR1D-int LTR MaLR 282 403 -967 5 984 274 183 110 27 chr12 52372297 52372370 -68885160 + ORR1D-int LTR MaLR 574 652 -718 5 984 1612 312 42 38 chr12 52372372 52373064 -68884466 + Lx8 LINE L1 6549 7243 -230 5 984 1333 228 203 51 chr12 52373321 52373424 -68884106 - RMER15 LTR ERVL -5 570 457 5 984 1200 61 0 0 chr12 52373424 52373571 -68883959 + B1_Mus2 SINE Alu 1 147 0 5 984 336 48 0 0 chr12 52373571 52373613 -68883917 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 5 984 1333 228 203 51 chr12 52373613 52373980 -68883550 - RMER15 LTR ERVL -119 456 28 5 984 661 229 53 75 chr12 52374072 52374299 -68883231 + MER31A LTR ERV1 176 397 -88 5 984 731 311 205 9 chr12 52374447 52374794 -68882736 - LFSINE_Vert SINE SINE -24 435 21 5 984 225 0 0 0 chr12 52374912 52374937 -68882593 + (A)n Simple_repeat Simple_repeat 1 25 0 5 984 298 266 0 0 chr12 52377975 52378039 -68879491 - ID_B1 SINE B4 -81 143 80 5 984 309 197 0 0 chr12 52378778 52378844 -68878686 + C-rich Low_complexity Low_complexity 2 67 0 5 984 237 159 0 0 chr12 52378977 52379021 -68878509 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 984 402 284 37 64 chr12 52379175 52379363 -68878167 - RLTR23 LTR ERV1 -4 426 244 5 984 221 208 21 0 chr12 52379734 52379782 -68877748 + (TTG)n Simple_repeat Simple_repeat 2 50 0 5 984 404 262 47 0 chr12 52379805 52379963 -68877567 + MTD LTR MaLR 10 234 -185 5 984 631 165 0 10 chr12 52380002 52380106 -68877424 + B3 SINE B2 2 104 -112 5 984 636 149 88 0 chr12 52380123 52380237 -68877293 + B1_Mur3 SINE Alu 26 149 0 5 984 803 251 60 11 chr12 52380688 52380873 -68876657 + B3 SINE B2 4 197 -19 5 984 34 0 0 0 chr12 52380901 52380935 -68876595 + AT_rich Low_complexity Low_complexity 1 34 0 5 984 629 241 14 47 chr12 52380935 52381083 -68876447 + ORR1D1 LTR MaLR 40 182 -192 5 984 894 150 0 0 chr12 52381083 52381236 -68876294 + CT-rich Low_complexity Low_complexity 1 153 0 5 984 332 303 88 40 chr12 52381236 52381384 -68876146 - HAL1-3A_ME LINE L1 -419 2439 2285 5 984 640 197 36 7 chr12 52381398 52381536 -68875994 + ORR1D1 LTR MaLR 218 359 -15 5 984 5185 48 0 11 chr12 52381737 52382385 -68875145 - L1Md_F2 LINE L1 -3 6579 5939 5 984 949 306 89 40 chr12 52382623 52382734 -68874796 - Lx9 LINE L1 -1 7472 7332 5 984 287 25 25 0 chr12 52382734 52382774 -68874756 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 984 1081 268 37 64 chr12 52382774 52383217 -68874313 - Lx9 LINE L1 -184 7460 6894 5 984 240 35 0 0 chr12 52384209 52384238 -68873292 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 5 984 1195 107 0 0 chr12 52384238 52384396 -68873134 - B2_Mm2 SINE B2 -35 160 3 5 984 738 272 82 19 chr12 52385491 52385697 -68871833 - ID_B1 SINE B4 0 224 6 5 984 234 156 0 0 chr12 52385745 52385790 -68871740 + (TTG)n Simple_repeat Simple_repeat 1 45 0 5 984 674 255 7 7 chr12 52385790 52385932 -68871598 - ID_B1 SINE B4 -1 223 82 5 984 189 94 0 0 chr12 52386264 52386296 -68871234 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 5 984 348 24 0 0 chr12 52386758 52386799 -68870731 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 5 984 1361 46 40 0 chr12 52386800 52386973 -68870557 - B2_Mm2 SINE B2 -13 182 3 5 984 3502 114 137 22 chr12 52387189 52387204 -68870326 + RMER6A LTR ERVK 37 51 -705 5 984 777 22 0 0 chr12 52387204 52387295 -68870235 + (TAA)n Simple_repeat Simple_repeat 3 93 0 5 984 3502 114 137 22 chr12 52387295 52387922 -68869608 + RMER6A LTR ERVK 52 752 -4 5 984 243 306 134 40 chr12 52388050 52388251 -68869279 + L2 LINE L2 2235 2454 -965 5 984 281 68 23 0 chr12 52388307 52388351 -68869179 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 5 984 306 376 23 0 chr12 52388366 52388499 -68869031 - LTR16B1 LTR ERVL -5 475 340 5 984 818 180 11 51 chr12 52388675 52388851 -68868679 + B2_Mm2 SINE B2 1 169 -26 5 984 594 0 0 0 chr12 52388851 52388917 -68868613 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 5 984 479 144 11 0 chr12 52388919 52388956 -68868574 + polypurine Low_complexity Low_complexity 3 39 0 5 984 1553 0 6 0 chr12 52388956 52389133 -68868397 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 5 984 479 144 11 0 chr12 52389133 52389185 -68868345 + polypurine Low_complexity Low_complexity 40 92 0 5 984 426 308 7 1 chr12 52389185 52389303 -68868227 - LTR16B1 LTR ERVL -344 136 1 5 984 592 262 136 25 chr12 52389752 52389874 -68867656 + RMER21B LTR ERV1 298 425 -417 5 984 2408 80 6 58 chr12 52389874 52390219 -68867311 + ORR1A2 LTR MaLR 1 327 0 5 984 592 262 136 25 chr12 52390219 52390339 -68867191 + RMER21B LTR ERV1 426 567 -275 5 984 1084 86 0 0 chr12 52390964 52391103 -68866427 - B1_Mus1 SINE Alu -9 139 1 5 984 4040 122 40 46 chr12 52391165 52391921 -68865609 + RMER17A LTR ERVK 1 751 0 5 984 450 83 0 0 chr12 52392040 52392112 -68865418 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 984 989 164 132 31 chr12 52392382 52392609 -68864921 - RMER15 LTR ERVL 0 575 326 5 984 2258 157 46 48 chr12 52392617 52392819 -68864711 + RLTR28B LTR ERVL 1 198 -283 5 984 4316 157 104 46 chr12 52392819 52393671 -68863859 + RMER19B LTR ERVK 1 902 0 5 984 2258 157 46 48 chr12 52393671 52393950 -68863580 + RLTR28B LTR ERVL 199 481 0 5 984 271 71 71 0 chr12 52393950 52393990 -68863540 - RMER15 LTR ERVL -253 322 280 5 984 2802 55 3 0 chr12 52393988 52394355 -68863175 - IAPEY_LTR LTR ERVK -17 368 1 5 984 1529 159 25 11 chr12 52394357 52394637 -68862893 - RMER15 LTR ERVL -291 284 1 5 984 207 170 21 21 chr12 52394691 52394704 -68862826 + (TAA)n Simple_repeat Simple_repeat 1 13 0 5 984 1146 56 7 0 chr12 52394704 52394846 -68862684 + B1_Mus1 SINE Alu 1 143 -5 5 984 207 170 21 21 chr12 52394846 52394880 -68862650 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 984 2753 136 148 8 chr12 52394957 52395470 -68862060 + RMER4B LTR ERVK 1 585 0 5 984 669 292 151 17 chr12 52395622 52395921 -68861609 + MLT1G1 LTR MaLR 241 579 0 5 984 353 340 78 25 chr12 52396140 52396421 -68861109 + L2a LINE L2 2742 3037 -382 5 984 452 251 185 12 chr12 52396520 52396693 -68860837 + L2a LINE L2 3224 3426 0 5 984 244 343 62 28 chr12 52396717 52396861 -68860669 + B1F SINE Alu 1 149 0 5 984 278 209 0 69 chr12 52397489 52397561 -68859969 - L1MEf LINE L1 -4742 1458 1392 5 984 456 337 71 30 chr12 52397661 52398157 -68859373 + L1M5 LINE L1 2357 2872 -3274 5 984 1046 68 7 0 chr12 52398158 52398306 -68859224 + B2_Mm1t SINE B2 3 151 -42 5 984 455 68 9 80 chr12 52399006 52399118 -68858412 + G-rich Low_complexity Low_complexity 1 104 0 5 984 687 57 0 0 chr12 52399118 52399206 -68858324 + (GAA)n Simple_repeat Simple_repeat 3 90 0 5 984 438 294 60 76 chr12 52399211 52399429 -68858101 + L1M5 LINE L1 3052 3282 -2864 5 984 733 152 49 35 chr12 52399429 52399572 -68857958 + B1_Mus2 SINE Alu 3 147 0 5 984 438 294 60 76 chr12 52399572 52399690 -68857840 + L1M5 LINE L1 3283 3385 -2761 5 984 1201 54 0 7 chr12 52399690 52399839 -68857691 + B1_Mus1 SINE Alu 1 148 0 5 984 438 269 100 62 chr12 52399839 52400115 -68857415 + L1M5 LINE L1 3386 3658 -2482 5 984 281 268 188 0 chr12 52400189 52400327 -68857203 + L1M5 LINE L1 5285 5448 -735 5 984 284 327 82 54 chr12 52400384 52400476 -68857054 + L1M5 LINE L1 5470 5548 -616 5 984 1316 83 11 22 chr12 52400476 52400661 -68856869 + B2_Mm1t SINE B2 2 184 -9 5 984 284 327 82 54 chr12 52400661 52400862 -68856668 + L1M5 LINE L1 5549 5771 -393 5 984 563 263 131 0 chr12 52400864 52401001 -68856529 + RSINE1 SINE B4 6 160 -5 5 984 1236 206 143 41 chr12 52401191 52401650 -68855880 + MT2B LTR ERVL 16 601 0 5 984 3321 199 33 11 chr12 52401789 52402484 -68855046 + Lx5 LINE L1 6030 6739 -311 5 984 336 102 0 0 chr12 52402621 52402670 -68854860 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 5 984 300 169 0 0 chr12 52402927 52402951 -68854579 + T-rich Low_complexity Low_complexity 42 65 0 5 984 1192 55 0 0 chr12 52402951 52403096 -68854434 - B1_Mus2 SINE Alu 0 147 3 5 984 300 169 0 0 chr12 52403096 52403136 -68854394 + T-rich Low_complexity Low_complexity 2 41 0 5 984 22 35 0 0 chr12 52403194 52403223 -68854307 + AT_rich Low_complexity Low_complexity 1 29 0 5 984 1770 135 127 28 chr12 52403532 52404000 -68853530 - RLTR6_Mm LTR ERV1 -43 611 37 5 984 32035 18 1 2 chr12 52404109 52407657 -68849873 - RLTR6-int LTR ERV1 0 7778 4235 5 984 1513 198 42 28 chr12 52407660 52408019 -68849511 - L1_Rod LINE L1 -630 5217 4854 5 984 981 61 106 0 chr12 52408399 52408531 -68848999 - B1_Mus2 SINE Alu 0 147 2 5 984 3134 32 0 8 chr12 52408558 52408933 -68848597 + L1Md_F3 LINE L1 6199 6570 -14 5 984 1743 133 17 103 chr12 52409152 52409209 -68848321 - ORR1A4 LTR MaLR 0 329 288 5 984 1385 82 0 30 chr12 52409209 52409409 -68848121 - B2_Mm2 SINE B2 -1 194 1 5 984 1743 133 17 103 chr12 52409409 52409711 -68847819 - ORR1A4 LTR MaLR -42 287 1 5 984 2102 127 219 45 chr12 52410822 52411307 -68846223 + RLTR6_Mm LTR ERV1 37 605 -49 6 984 66564 32 12 0 chr12 52411307 52418990 -68838540 + RLTR6-int LTR ERV1 1 7778 0 6 984 1724 169 195 26 chr12 52418998 52419496 -68838034 + RLTR6_Mm LTR ERV1 3 584 -70 6 984 1915 170 73 18 chr12 52419501 52419885 -68837645 - Lx9 LINE L1 -156 7488 7084 6 984 188 67 0 32 chr12 52419888 52419919 -68837611 + (CCCCCT)n Simple_repeat Simple_repeat 5 34 0 6 984 397 252 19 9 chr12 52419939 52420047 -68837483 - PB1D10 SINE Alu -1 116 8 6 984 579 304 80 51 chr12 52420080 52420669 -68836861 - L1M4 LINE L1 -1381 4765 4160 6 984 314 350 50 81 chr12 52420815 52421138 -68836392 + MER110-int LTR ERV1 3265 3577 -1070 6 984 442 60 0 57 chr12 52421138 52421226 -68836304 + (TTCTC)n Simple_repeat Simple_repeat 5 87 0 6 984 276 30 0 0 chr12 52421226 52421259 -68836271 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 984 258 32 0 0 chr12 52421259 52421289 -68836241 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 984 180 125 0 0 chr12 52421324 52421356 -68836174 + (A)n Simple_repeat Simple_repeat 1 32 0 6 984 277 93 0 0 chr12 52421368 52421411 -68836119 + B2_Mm2 SINE B2 4 46 -149 6 984 23 33 0 0 chr12 52421501 52421531 -68835999 + AT_rich Low_complexity Low_complexity 1 30 0 6 984 1179 199 46 17 chr12 52421552 52421792 -68835738 + Lx5 LINE L1 6515 6761 -289 6 984 974 175 59 45 chr12 52422038 52422259 -68835271 - URR1A DNA MER1_type 0 226 3 6 984 553 335 49 28 chr12 52422297 52422583 -68834947 + MER110-int LTR ERV1 3990 4281 -366 6 984 2011 168 65 0 chr12 52422594 52422981 -68834549 + MTC LTR MaLR 2 413 -8 6 984 1197 75 0 0 chr12 52423302 52423449 -68834081 + B1_Mus1 SINE Alu 2 148 0 6 984 213 333 95 13 chr12 52423557 52423715 -68833815 - MIRb SINE MIR -67 201 31 6 984 213 108 0 0 chr12 52424129 52424166 -68833364 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 6 984 617 143 29 0 chr12 52425083 52425188 -68832342 + B2_Mm2 SINE B2 2 109 -86 6 984 355 264 0 0 chr12 52425188 52425275 -68832255 - L1M3 LINE L1 -409 5780 5694 6 984 1198 55 0 7 chr12 52425282 52425430 -68832100 + B1_Mus2 SINE Alu 1 147 0 6 984 552 158 41 16 chr12 52425554 52425676 -68831854 - Lx9 LINE L1 -7 7637 7513 6 984 1665 175 74 84 chr12 52425946 52426139 -68831391 + MTC LTR MaLR 1 209 -212 6 984 1203 48 7 0 chr12 52426139 52426286 -68831244 + B1_Mus1 SINE Alu 1 148 0 6 984 1665 176 70 87 chr12 52426286 52426523 -68831007 + MTC LTR MaLR 210 413 -8 6 984 216 86 0 0 chr12 52428154 52428189 -68829341 + (A)n Simple_repeat Simple_repeat 1 35 0 6 984 819 137 13 1 chr12 52428208 52428354 -68829176 + B2_Mm2 SINE B2 2 159 -57 6 984 279 0 0 0 chr12 52428369 52428400 -68829130 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 984 663 145 18 21 chr12 52428482 52428760 -68828770 + GA-rich Low_complexity Low_complexity 1 276 0 6 15 417 172 101 54 chr12 52428798 52428927 -68828603 + Lx9 LINE L1 7502 7636 -8 6 985 2789 186 78 14 chr12 52428933 52429561 -68827969 + Lx9 LINE L1 5314 6008 -1465 6 985 1648 42 0 0 chr12 52429561 52429753 -68827777 + B2_Mm1t SINE B2 2 193 0 6 985 6556 173 108 32 chr12 52429753 52431178 -68826352 + Lx9 LINE L1 6111 7644 0 6 985 498 253 26 73 chr12 52431288 52431480 -68826050 + L1_Rod LINE L1 5626 5808 -39 6 985 266 268 97 9 chr12 52431536 52431649 -68825881 + MER52-int LTR ERV1 3842 3964 -3127 6 985 1198 47 0 13 chr12 52431780 52431930 -68825600 + B1_Mus1 SINE Alu 1 148 0 6 985 1420 222 74 23 chr12 52432045 52432395 -68825135 - ORR1D2 LTR MaLR 0 370 3 6 985 1415 69 27 0 chr12 52432567 52432755 -68824775 + B2_Mm1a SINE B2 1 193 0 6 985 1264 27 7 0 chr12 52432755 52432900 -68824630 + B1_Mm SINE Alu 1 147 0 6 985 806 279 104 12 chr12 52432924 52433174 -68824356 - MTE2a LTR MaLR -106 273 1 6 985 1201 48 7 0 chr12 52433348 52433493 -68824037 + B1_Mm SINE Alu 1 146 -1 6 985 617 169 0 25 chr12 52433743 52433885 -68823645 - ORR1B1 LTR MaLR -248 130 1 6 985 1826 236 55 14 chr12 52433920 52434431 -68823099 - RMER5 LTR ERV1 -2 532 1 6 985 3438 229 119 41 chr12 52434473 52434670 -68822860 - L1_Mur3 LINE L1 -3325 2555 2357 6 985 1257 118 11 5 chr12 52434670 52434857 -68822673 - B2_Mm1t SINE B2 -4 189 2 6 985 3438 234 114 42 chr12 52434857 52435990 -68821540 - L1_Mur3 LINE L1 -3524 2356 1117 6 985 2131 213 45 34 chr12 52436035 52436507 -68821023 - Lx5 LINE L1 -11 7039 6563 6 985 1391 184 88 8 chr12 52436537 52436800 -68820730 + Lx5 LINE L1 6169 6452 -598 6 985 330 0 19 39 chr12 52436801 52436853 -68820677 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 6 985 1169 75 0 6 chr12 52436854 52437016 -68820514 - B2_Mm2 SINE B2 -34 161 1 6 985 747 154 0 8 chr12 52437016 52437134 -68820396 + Lx5 LINE L1 6445 6561 -489 6 985 351 65 0 0 chr12 52437235 52437281 -68820249 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 985 404 261 60 22 chr12 52437417 52437614 -68819916 - L1_Rod LINE L1 -839 5464 5222 6 985 1128 96 47 18 chr12 52437619 52437789 -68819741 - B2_Mm2 SINE B2 -19 176 2 6 985 352 274 0 73 chr12 52437881 52437991 -68819539 - RSINE1 SINE B4 -60 105 4 6 985 1273 269 97 50 chr12 52438003 52438445 -68819085 - L1_Rod LINE L1 -628 5219 4774 6 985 486 0 0 0 chr12 52438445 52438499 -68819031 + (CTATT)n Simple_repeat Simple_repeat 5 58 0 6 985 1273 269 97 50 chr12 52438499 52438771 -68818759 - L1_Rod LINE L1 -1074 4773 4474 6 985 437 167 0 0 chr12 52438796 52438874 -68818656 - ORR1D2 LTR MaLR 0 370 293 6 985 782 146 55 14 chr12 52438991 52439137 -68818393 + RLTR25A LTR ERVK 70 221 -882 6 985 840 241 66 45 chr12 52439114 52439357 -68818173 - ORR1D2 LTR MaLR -103 267 20 6 985 474 290 0 97 chr12 52439379 52439616 -68817914 - L1_Mur3 LINE L1 -1403 4477 4264 6 985 1320 210 144 137 chr12 52439639 52440111 -68817419 + MT2A LTR ERVL 1 462 -71 6 985 217 135 19 19 chr12 52440117 52440170 -68817360 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 6 985 259 137 58 19 chr12 52440216 52440268 -68817262 + MERVL_2A-int LTR ERVL 3 56 -5705 6 985 345 215 108 0 chr12 52440281 52440374 -68817156 - B1_Mur3 SINE Alu -1 148 46 6 985 259 231 0 44 chr12 52440321 52440389 -68817141 - RLTR25A LTR ERVK -531 572 508 6 985 1088 115 0 0 chr12 52440511 52440659 -68816871 + B1_Mus1 SINE Alu 1 148 0 6 985 452 73 29 0 chr12 52440661 52440729 -68816801 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 6 985 1113 88 0 0 chr12 52440830 52440968 -68816562 + B1_Mus1 SINE Alu 2 139 -9 6 985 543 31 0 0 chr12 52440968 52441033 -68816497 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 6 985 1168 44 0 0 chr12 52441137 52441274 -68816256 + B1_Mus1 SINE Alu 2 138 -10 6 985 192 152 0 0 chr12 52441294 52441327 -68816203 + A-rich Low_complexity Low_complexity 1 33 0 6 985 403 181 41 31 chr12 52441355 52441452 -68816078 + RLTR23 LTR ERV1 333 430 0 6 985 228 235 0 38 chr12 52441452 52441505 -68816025 - PB1D9 SINE Alu -69 51 1 6 985 3293 174 41 7 chr12 52441507 52442098 -68815432 + MERVL_2A-int LTR ERVL 41 651 -5110 6 985 10115 158 75 14 chr12 52442095 52443854 -68813676 + MERVL_2A-int LTR ERVL 3679 5544 -217 6 985 3127 51 8 15 chr12 52443870 52444269 -68813261 + MTA_Mm LTR MaLR 1 396 0 6 985 12793 75 20 3 chr12 52444269 52446030 -68811500 + MTA_Mm-int LTR MaLR 2 1792 0 6 985 2938 35 0 3 chr12 52446030 52446377 -68811153 + MTA_Mm LTR MaLR 1 346 0 6 985 341 123 0 52 chr12 52446393 52446470 -68811060 + MTA_Mm-int LTR MaLR 567 639 -1324 6 985 1147 188 236 112 chr12 52446493 52446967 -68810563 + MT2A LTR ERVL 1 533 0 6 985 1192 54 0 0 chr12 52447793 52447940 -68809590 - B1_Mus1 SINE Alu 0 148 2 6 985 706 220 126 0 chr12 52447965 52448156 -68809374 - B3 SINE B2 0 216 2 6 985 451 299 93 33 chr12 52450668 52450882 -68806648 + MIR SINE MIR 7 233 -29 6 985 1174 21 0 7 chr12 52450952 52451093 -68806437 - B1_Mus2 SINE Alu -6 141 2 6 985 34 0 0 0 chr12 52451101 52451135 -68806395 + AT_rich Low_complexity Low_complexity 1 34 0 6 985 305 167 12 0 chr12 52451139 52451199 -68806331 - B1_Mus2 SINE Alu -54 63 1 6 985 258 222 0 53 chr12 52451153 52451210 -68806320 - B4A SINE B4 -161 131 78 6 985 22 35 0 0 chr12 52452443 52452472 -68805058 + AT_rich Low_complexity Low_complexity 1 29 0 6 985 519 159 84 70 chr12 52452874 52453016 -68804514 - B1_Mur1 SINE Alu -2 147 4 6 985 1158 68 0 0 chr12 52453033 52453179 -68804351 - B1_Mus2 SINE Alu 0 147 2 6 985 1036 73 14 7 chr12 52453296 52453434 -68804096 - B1_Mm SINE Alu -7 140 2 6 985 398 340 18 41 chr12 52454248 52454417 -68803113 + B4 SINE B4 5 169 -123 6 985 180 111 0 0 chr12 52454555 52454582 -68802948 + (T)n Simple_repeat Simple_repeat 1 27 0 6 985 303 130 0 0 chr12 52455165 52455219 -68802311 + (T)n Simple_repeat Simple_repeat 1 54 0 6 985 1504 135 54 91 chr12 52455302 52455400 -68802130 - RLTR15 LTR ERVK -21 338 236 6 985 1179 61 0 7 chr12 52455400 52455548 -68801982 + B1_Mus1 SINE Alu 2 148 0 6 985 1504 135 54 91 chr12 52455548 52455800 -68801730 - RLTR15 LTR ERVK -124 235 1 6 985 828 183 44 24 chr12 52456152 52456351 -68801179 - B2_Mm2 SINE B2 -6 210 4 6 985 1107 256 86 36 chr12 52456387 52456723 -68800807 - MTD LTR MaLR -66 353 1 6 985 509 288 0 0 chr12 52457029 52457140 -68800390 + B3 SINE B2 1 111 -105 6 985 180 0 0 0 chr12 52458683 52458703 -68798827 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 985 195 42 0 0 chr12 52459058 52459082 -68798448 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 6 985 180 135 0 0 chr12 52459082 52459119 -68798411 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 985 423 229 107 60 chr12 52460341 52460490 -68797040 + MTD LTR MaLR 264 419 0 6 985 1418 63 5 16 chr12 52461448 52461641 -68795889 + B2_Mm2 SINE B2 1 191 -4 6 985 1197 14 0 7 chr12 52461649 52461788 -68795742 + B1_Mus2 SINE Alu 2 139 -8 6 985 2017 159 110 3 chr12 52463109 52463482 -68794048 + MTC LTR MaLR 1 413 -8 6 985 414 189 227 14 chr12 52463898 52464028 -68793502 + B1F SINE Alu 1 125 -24 6 985 222 314 81 11 chr12 52465754 52465841 -68791689 - MER5A DNA MER1_type -96 93 1 6 985 545 281 111 12 chr12 52466704 52466866 -68790664 + B3A SINE B2 1 178 -20 6 985 318 292 54 138 chr12 52467033 52467046 -68790484 - B4 SINE B4 -61 231 192 6 985 762 141 33 0 chr12 52467046 52467167 -68790363 - B1_Mur3 SINE Alu -7 142 18 7 985 318 292 54 138 chr12 52467167 52467200 -68790330 - B4 SINE B4 -61 191 79 6 985 889 221 0 6 chr12 52468343 52468511 -68789019 - B3 SINE B2 -7 209 43 7 985 218 273 242 33 chr12 52469058 52469149 -68788381 + PB1D10 SINE Alu 1 110 -7 7 985 1257 86 15 0 chr12 52469154 52469341 -68788189 + B2_Mm1t SINE B2 1 195 0 7 985 217 330 19 93 chr12 52469420 52469527 -68788003 - RSINE1 SINE B4 -6 159 61 7 985 373 254 138 133 chr12 52469596 52469644 -68787886 + B3A SINE B2 2 35 -163 7 985 526 241 14 21 chr12 52469644 52469784 -68787746 + B1_Mur1 SINE Alu 5 143 -6 7 985 373 254 138 133 chr12 52469784 52469930 -68787600 + B3A SINE B2 36 197 -1 7 985 365 355 18 0 chr12 52470540 52470650 -68786880 - ID_B1 SINE B4 -30 194 83 7 985 494 223 24 16 chr12 52470703 52470806 -68786724 - URR1B DNA MER1_type -4 221 116 7 985 1279 103 11 0 chr12 52470806 52470990 -68786540 - B2_Mm1t SINE B2 -7 186 1 7 985 1326 78 36 15 chr12 52470995 52471190 -68786340 + RMER17A LTR ERVK 1 199 -552 7 985 3181 82 38 22 chr12 52471195 52471697 -68785833 - RMER17A LTR ERVK -241 510 1 7 985 324 243 52 43 chr12 52471710 52471826 -68785704 - Lx8 LINE L1 -1047 6426 6310 7 985 228 100 0 0 chr12 52471872 52471912 -68785618 + (T)n Simple_repeat Simple_repeat 1 40 0 7 985 1169 48 7 0 chr12 52471912 52472057 -68785473 - B1_Mus1 SINE Alu 0 148 3 7 985 983 121 46 62 chr12 52472307 52472501 -68785029 + B2_Mm2 SINE B2 2 192 -3 7 985 26 30 0 0 chr12 52474024 52474057 -68783473 + AT_rich Low_complexity Low_complexity 1 33 0 7 985 236 53 26 0 chr12 52474130 52474168 -68783362 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 985 261 232 53 18 chr12 52474169 52474226 -68783304 - B1_Mur2 SINE Alu -23 126 68 7 985 271 336 26 17 chr12 52474755 52474870 -68782660 - PB1D10 SINE Alu 0 117 2 7 985 299 219 47 116 chr12 52474954 52475075 -68782455 + PB1D7 SINE Alu 6 119 -1 7 985 380 188 0 0 chr12 52475486 52475555 -68781975 + B2_Mm2 SINE B2 4 72 -123 7 985 324 286 0 67 chr12 52476467 52476572 -68780958 + BC1_Mm scRNA scRNA 4 101 -51 7 985 1129 229 71 0 chr12 52476702 52476968 -68780562 - MTC LTR MaLR -113 308 24 7 985 22 56 0 0 chr12 52477786 52477822 -68779708 + AT_rich Low_complexity Low_complexity 1 36 0 7 985 237 33 0 0 chr12 52479782 52479812 -68777718 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 985 1143 68 0 0 chr12 52479813 52479960 -68777570 - B1_Mus1 SINE Alu 0 148 2 7 985 312 235 0 14 chr12 52480385 52480454 -68777076 - MIR SINE MIR -101 161 94 7 985 313 308 0 55 chr12 52480653 52480706 -68776824 + L2a LINE L2 2280 2327 -1092 7 985 1915 167 53 6 chr12 52480706 52481067 -68776463 - ORR1C1 LTR MaLR 0 378 1 7 985 313 308 0 55 chr12 52481067 52481123 -68776407 + L2a LINE L2 2328 2383 -1036 7 985 791 321 73 27 chr12 52481475 52481888 -68775642 + L2a LINE L2 2984 3415 -11 7 985 1226 48 0 0 chr12 52481888 52482035 -68775495 + B1_Mus2 SINE Alu 1 147 0 7 985 219 69 0 0 chr12 52482042 52482071 -68775459 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 7 985 1213 61 0 0 chr12 52482242 52482389 -68775141 - B1_Mus1 SINE Alu -1 147 1 7 985 664 272 6 24 chr12 52482913 52483079 -68774451 + RSINE1 SINE B4 3 165 0 7 985 780 255 97 103 chr12 52483132 52483442 -68774088 + MER2 DNA MER2_type 4 311 -34 7 985 691 216 37 0 chr12 52483659 52483793 -68773737 + B1_Mur2 SINE Alu 1 139 -10 7 985 192 111 0 0 chr12 52483831 52483867 -68773663 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 985 1086 57 43 0 chr12 52483867 52484008 -68773522 - B1_Mus1 SINE Alu -1 147 1 7 985 654 281 36 42 chr12 52484077 52484270 -68773260 + ID_B1 SINE B4 33 224 0 7 985 183 325 61 24 chr12 52484498 52484580 -68772950 - L4 LINE RTE -1096 933 849 7 985 197 65 0 31 chr12 52484883 52484915 -68772615 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 985 349 331 40 0 chr12 52485326 52485450 -68772080 + MER2B DNA MER2_type 208 336 0 7 985 807 277 129 111 chr12 52485466 52485598 -68771932 - MER44B DNA MER2_type -99 451 293 7 985 4218 86 14 2 chr12 52485598 52486168 -68771362 + L1_Mus1 LINE L1 5990 6566 -1 7 985 807 277 129 111 chr12 52486168 52486477 -68771053 - MER44B DNA MER2_type -258 292 2 7 985 457 219 48 0 chr12 52486773 52486878 -68770652 - PB1D7 SINE Alu -10 110 1 7 985 375 157 0 0 chr12 52486985 52487055 -68770475 + (CATA)n Simple_repeat Simple_repeat 1 70 0 7 985 936 150 61 46 chr12 52487057 52487137 -68770393 - B3 SINE B2 -17 199 121 7 985 1783 144 160 16 chr12 52487137 52487394 -68770136 - MTC LTR MaLR 0 421 153 7 985 270 0 0 0 chr12 52487394 52487424 -68770106 + (GGCTG)n Simple_repeat Simple_repeat 3 32 0 7 985 1783 144 160 16 chr12 52487424 52487534 -68769996 - MTC LTR MaLR -269 152 2 7 985 936 150 61 46 chr12 52487534 52487649 -68769881 - B3 SINE B2 -96 120 1 7 985 203 138 0 0 chr12 52489092 52489121 -68768409 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 7 985 929 90 75 0 chr12 52489124 52489258 -68768272 - B1_Mur4 SINE Alu -5 145 2 7 985 227 275 0 59 chr12 52489405 52489490 -68768040 + ID4_ SINE ID 2 81 -2 7 985 1349 82 16 16 chr12 52489628 52489814 -68767716 + B2_Mm2 SINE B2 2 187 -8 7 985 1055 81 0 7 chr12 52490042 52490179 -68767351 + B1_Mus1 SINE Alu 1 137 -11 7 985 203 0 0 36 chr12 52490179 52490207 -68767323 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 985 1055 81 0 7 chr12 52490207 52490218 -68767312 + B1_Mus1 SINE Alu 138 148 0 7 985 376 287 73 7 chr12 52490564 52490701 -68766829 + B1F1 SINE Alu 1 146 -3 7 985 398 236 11 11 chr12 52490726 52490820 -68766710 - ID_B1 SINE B4 -17 207 114 7 985 418 297 67 103 chr12 52492173 52492368 -68765162 - B3A SINE B2 -10 188 1 7 985 476 253 130 38 chr12 52492655 52492840 -68764690 - B3 SINE B2 -14 202 1 7 985 48 0 0 0 chr12 52492884 52492932 -68764598 + AT_rich Low_complexity Low_complexity 1 48 0 7 985 858 40 18 0 chr12 52492932 52493056 -68764474 - B1_Mus1 SINE Alu -6 142 1 7 985 22 35 0 0 chr12 52493056 52493085 -68764445 + AT_rich Low_complexity Low_complexity 1 29 0 7 985 315 224 89 30 chr12 52493660 52493761 -68763769 - PB1D7 SINE Alu -13 107 1 7 985 375 78 0 0 chr12 52494694 52494745 -68762785 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 985 360 189 253 0 chr12 52494969 52495064 -68762466 - PB1D9 SINE Alu -1 119 1 7 985 21 0 0 0 chr12 52495130 52495151 -68762379 + AT_rich Low_complexity Low_complexity 1 21 0 7 985 244 254 83 17 chr12 52495212 52495272 -68762258 - PB1D7 SINE Alu -56 64 1 7 985 364 161 161 18 chr12 52495813 52495911 -68761619 - B2_Mm2 SINE B2 -16 177 47 7 985 1204 108 17 0 chr12 52495994 52496170 -68761360 - B2_Mm1t SINE B2 -14 179 1 7 985 240 259 11 105 chr12 52496865 52496960 -68760570 - PB1D10 SINE Alu -5 112 27 7 985 1116 69 14 0 chr12 52498044 52498188 -68759342 + B1_Mus1 SINE Alu 3 148 0 7 985 605 219 76 0 chr12 52499256 52499375 -68758155 - B1_Mur4 SINE Alu -21 129 2 7 985 241 321 0 67 chr12 52499297 52499387 -68758143 - B4A SINE B4 -129 163 80 7 985 287 247 66 66 chr12 52500069 52500160 -68757370 + MER20 DNA MER1_type 129 219 0 1 985 181 224 78 39 chr12 52501644 52501695 -68755835 - MIRm SINE MIR -111 165 113 2 985 322 278 11 28 chr12 52501696 52501803 -68755727 + B1F SINE Alu 3 104 -16 3 985 215 331 15 90 chr12 52501803 52501829 -68755701 + B4 SINE B4 88 210 -82 4 985 221 275 123 12 chr12 52502195 52502276 -68755254 + PB1D7 SINE Alu 26 115 -5 5 985 228 253 39 26 chr12 52502669 52502746 -68754784 - L2a LINE L2 -71 3355 3278 6 985 303 287 277 16 chr12 52503033 52503217 -68754313 - L2a LINE L2 -1465 1954 1723 6 985 263 234 103 13 chr12 52503265 52503343 -68754187 - MER20 DNA MER1_type -24 195 111 7 985 281 350 211 4 chr12 52503442 52503717 -68753813 - L2a LINE L2 -2762 657 326 6 985 666 37 0 0 chr12 52503913 52503994 -68753536 + (TTCTC)n Simple_repeat Simple_repeat 2 82 0 8 985 306 0 0 0 chr12 52503994 52504028 -68753502 + (CCTG)n Simple_repeat Simple_repeat 4 37 0 9 985 609 14 0 0 chr12 52504028 52504098 -68753432 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 1 985 1136 76 0 0 chr12 52504337 52504482 -68753048 + B1_Mm SINE Alu 3 147 0 1 985 246 128 0 0 chr12 52504482 52504521 -68753009 + (A)n Simple_repeat Simple_repeat 1 39 0 1 985 285 233 19 67 chr12 52504906 52504999 -68752531 - PB1D7 SINE Alu -6 114 17 1 985 180 125 0 0 chr12 52505087 52505119 -68752411 + (GGAGA)n Simple_repeat Simple_repeat 3 34 0 1 985 464 211 39 0 chr12 52505878 52505982 -68751548 - PB1D7 SINE Alu -6 114 7 1 985 289 298 0 34 chr12 52505910 52506028 -68751502 - B4A SINE B4 -130 162 49 1 985 299 138 62 0 chr12 52506116 52506181 -68751349 - MER33 DNA MER1_type -41 283 215 1 985 922 265 55 26 chr12 52506705 52507015 -68750515 - RLTR16 LTR ERVK -186 319 1 1 985 252 0 0 0 chr12 52507456 52507484 -68750046 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 985 875 78 133 0 chr12 52507485 52507613 -68749917 - B1_Mus1 SINE Alu -1 147 3 2 985 521 175 204 0 chr12 52509054 52509157 -68748373 - B1_Mur4 SINE Alu 0 150 27 2 985 353 275 57 24 chr12 52509510 52509633 -68747897 + Tigger10 DNA Tigger 1596 1722 -121 2 985 218 194 0 15 chr12 52510378 52510446 -68747084 + GA-rich Low_complexity Low_complexity 2 68 0 2 985 224 128 0 60 chr12 52510769 52510819 -68746711 + T-rich Low_complexity Low_complexity 2 48 0 2 985 2365 79 3 0 chr12 52512104 52512422 -68745108 - ORR1A2 LTR MaLR -8 319 1 2 985 230 283 62 77 chr12 52512455 52512585 -68744945 + LTR79 LTR ERVL 26 153 -374 2 985 396 250 149 41 chr12 52512687 52512808 -68744722 - ORR1E LTR MaLR -220 139 6 2 985 261 57 0 0 chr12 52512948 52512983 -68744547 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2 985 21 0 0 0 chr12 52514376 52514397 -68743133 + AT_rich Low_complexity Low_complexity 1 21 0 2 985 21 0 0 0 chr12 52514501 52514522 -68743008 + AT_rich Low_complexity Low_complexity 1 21 0 3 985 21 95 0 0 chr12 52514863 52514926 -68742604 + AT_rich Low_complexity Low_complexity 1 63 0 3 985 296 174 87 0 chr12 52516862 52516931 -68740599 - PB1D10 SINE Alu 0 117 43 3 985 443 286 68 9 chr12 52517042 52517261 -68740269 - MER33 DNA MER1_type -37 287 56 1 985 1393 67 33 0 chr12 52518210 52518390 -68739140 - B2_Mm2 SINE B2 -9 186 1 3 985 1269 34 0 0 chr12 52518488 52518635 -68738895 + B1_Mm SINE Alu 1 147 0 3 985 486 171 293 18 chr12 52518657 52518824 -68738706 + B3 SINE B2 1 213 -3 3 985 1138 57 0 28 chr12 52520556 52520701 -68736829 + B1_Mm SINE Alu 2 142 -5 3 985 201 159 0 0 chr12 52520701 52520745 -68736785 + GA-rich Low_complexity Low_complexity 3 46 0 3 985 216 0 0 0 chr12 52520801 52520825 -68736705 + (A)n Simple_repeat Simple_repeat 1 24 0 3 985 342 282 184 39 chr12 52521122 52521377 -68736153 + B4 SINE B4 1 292 0 3 985 649 229 7 51 chr12 52521586 52521724 -68735806 + B1_Mur1 SINE Alu 1 132 -17 4 985 495 362 159 5 chr12 52521862 52522240 -68735290 - L4 LINE RTE -427 1602 1167 4 985 581 250 62 7 chr12 52522420 52522565 -68734965 - RSINE1 SINE B4 -11 154 2 4 985 5463 65 8 6 chr12 52523030 52523745 -68733785 + L1_Mus1 LINE L1 5851 6567 0 4 985 217 204 0 18 chr12 52524382 52524437 -68733093 + B4A SINE B4 6 59 -233 4 985 250 272 95 34 chr12 52524659 52524838 -68732692 + L1MC4a LINE L1 6866 7055 -987 4 985 194 0 39 0 chr12 52525124 52525150 -68732380 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 985 310 303 84 7 chr12 52525254 52525397 -68732133 + L1MC4a LINE L1 7233 7386 -496 4 985 597 234 36 7 chr12 52525612 52525750 -68731780 - B1F SINE Alu -7 142 1 4 985 3772 21 2 0 chr12 52526237 52526672 -68730858 - L1Md_A LINE L1 -2 6580 6145 4 985 278 254 321 49 chr12 52527977 52528201 -68729329 + B4A SINE B4 2 286 -6 4 985 1017 67 0 0 chr12 52528447 52528581 -68728949 - B1_Mus1 SINE Alu 0 148 15 5 985 391 184 26 112 chr12 52528482 52528598 -68728932 - MT2B LTR ERVL -337 264 159 5 985 403 238 19 38 chr12 52529462 52529567 -68727963 + PB1D10 SINE Alu 1 103 -14 5 985 907 286 55 4 chr12 52529754 52530028 -68727502 + MER2 DNA MER2_type 46 333 -12 5 985 761 86 103 0 chr12 52530703 52530819 -68726711 + B1_Mur4 SINE Alu 3 130 -20 5 985 456 283 58 8 chr12 52530824 52530945 -68726585 + RSINE1 SINE B4 3 129 -36 5 985 368 200 107 0 chr12 52531054 52531129 -68726401 + B1F1 SINE Alu 13 95 -54 5 985 238 230 81 0 chr12 52532228 52532302 -68725228 - ID2 SINE ID -2 81 2 5 985 26 64 0 0 chr12 52532339 52532386 -68725144 + AT_rich Low_complexity Low_complexity 1 47 0 5 985 1358 153 0 31 chr12 52532886 52533109 -68724421 + URR1A DNA MER1_type 11 226 0 5 985 32 57 0 0 chr12 52533998 52534051 -68723479 + AT_rich Low_complexity Low_complexity 1 53 0 6 985 1118 82 0 0 chr12 52534595 52534742 -68722788 - B1_Mus1 SINE Alu 0 148 2 6 985 203 0 37 0 chr12 52534752 52534779 -68722751 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 985 1217 41 0 0 chr12 52534779 52534924 -68722606 - B1_Mm SINE Alu -2 145 1 6 985 1211 54 0 0 chr12 52535107 52535254 -68722276 - B1_Mus2 SINE Alu 0 147 1 6 985 1064 259 57 3 chr12 52535264 52535597 -68721933 - Lx3C LINE L1 -1 6975 6625 6 985 925 136 21 0 chr12 52536264 52536404 -68721126 + B1_Mur4 SINE Alu 1 143 -7 6 985 352 215 0 78 chr12 52536560 52536676 -68720854 - L1M5 LINE L1 -450 5674 5568 6 985 25 31 0 0 chr12 52537307 52537339 -68720191 + AT_rich Low_complexity Low_complexity 1 32 0 6 985 236 268 18 134 chr12 52538352 52538464 -68719066 + MT2B LTR ERVL 165 263 -338 6 985 571 176 30 74 chr12 52538372 52538507 -68719023 + B1_Mur1 SINE Alu 21 149 0 7 985 492 265 32 44 chr12 52538676 52538697 -68718833 - B4 SINE B4 -50 242 87 7 985 705 190 80 0 chr12 52538697 52538834 -68718696 - B1_Mur2 SINE Alu 0 149 2 7 985 330 225 0 101 chr12 52538751 52538850 -68718680 - MT2B LTR ERVL -361 240 152 7 985 574 262 110 46 chr12 52538862 52539218 -68718312 + MTD LTR MaLR 1 379 0 7 985 553 208 2 0 chr12 52539269 52539386 -68718144 - B1F SINE Alu -1 119 1 7 985 237 392 92 0 chr12 52539386 52539436 -68718094 - B4 SINE B4 -203 89 26 7 985 986 69 23 0 chr12 52541117 52541247 -68716283 + B1_Mus1 SINE Alu 1 133 -15 7 985 391 337 42 6 chr12 52541456 52541623 -68715907 - MIR SINE MIR -11 251 79 7 985 645 242 140 0 chr12 52542183 52542369 -68715161 + ID_B1 SINE B4 2 213 -11 7 985 243 0 0 0 chr12 52542376 52542403 -68715127 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 985 514 258 51 36 chr12 52542410 52542547 -68714983 - RSINE1 SINE B4 -25 140 2 8 985 328 339 83 16 chr12 52542839 52543031 -68714499 + MER46C DNA MER2_type 19 223 -115 8 985 395 308 111 21 chr12 52543204 52543393 -68714137 + MIR SINE MIR 49 254 -8 8 985 2978 50 52 8 chr12 52544063 52544465 -68713065 - BGLII LTR ERVK -1 420 1 8 985 265 217 84 0 chr12 52544826 52544909 -68712621 + L1MB7 LINE L1 5997 6086 -98 8 985 1045 73 0 0 chr12 52545452 52545588 -68711942 + B1_Mus1 SINE Alu 13 148 0 8 985 481 238 18 11 chr12 52546878 52546987 -68710543 + PB1 SINE Alu 18 116 -11 8 985 21 36 0 0 chr12 52547072 52547100 -68710430 + AT_rich Low_complexity Low_complexity 1 28 0 8 985 999 103 70 5 chr12 52547574 52547760 -68709770 + Lx3A LINE L1 6761 6958 -23 8 985 504 156 0 0 chr12 52547760 52547850 -68709680 + GA-rich Low_complexity Low_complexity 1 90 0 9 985 630 104 0 0 chr12 52548148 52548244 -68709286 + (CA)n Simple_repeat Simple_repeat 2 97 0 9 985 941 57 8 0 chr12 52548244 52548366 -68709164 + B1_Mus1 SINE Alu 25 147 -1 9 985 192 111 0 0 chr12 52548367 52548403 -68709127 + (A)n Simple_repeat Simple_repeat 1 36 0 9 985 297 271 71 0 chr12 52549322 52549407 -68708123 - B4A SINE B4 -199 93 3 9 985 357 287 132 58 chr12 52549644 52549970 -68707560 - L1MEf LINE L1 -5182 1018 669 9 985 24 0 0 0 chr12 52550110 52550134 -68707396 + AT_rich Low_complexity Low_complexity 1 24 0 9 985 27 0 0 0 chr12 52550854 52550881 -68706649 + AT_rich Low_complexity Low_complexity 1 27 0 9 985 1144 36 14 0 chr12 52551208 52551347 -68706183 - B1_Mur4 SINE Alu -9 141 1 9 985 24 0 0 0 chr12 52551625 52551649 -68705881 + AT_rich Low_complexity Low_complexity 1 24 0 9 985 332 361 60 0 chr12 52552096 52552229 -68705301 + RSINE1 SINE B4 3 143 -22 1 985 237 323 0 10 chr12 52552738 52552835 -68704695 + L1MEc LINE L1 50 145 -6255 1 985 248 206 123 31 chr12 52552970 52553035 -68704495 - B3A SINE B2 -125 73 3 1 985 21 0 0 0 chr12 52553714 52553735 -68703795 + GC_rich Low_complexity Low_complexity 1 21 0 1 985 3377 185 65 65 chr12 52553833 52554531 -68702999 + L1_Rod LINE L1 455 1189 -6419 1 985 2238 112 15 6 chr12 52554531 52554865 -68702665 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 985 5047 182 56 33 chr12 52554865 52555141 -68702389 + L1_Rod LINE L1 1190 1420 -4427 1 985 189 0 0 0 chr12 52555141 52555162 -68702368 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 985 5047 181 54 26 chr12 52555162 52556224 -68701306 + L1_Rod LINE L1 1421 2531 -3316 1 985 4857 201 93 4 chr12 52556236 52557305 -68700225 + Lx9 LINE L1 6480 7643 -1 1 985 485 317 33 0 chr12 52558954 52559074 -68698456 + RSINE1 SINE B4 30 153 -12 1 985 307 268 21 93 chr12 52559656 52559796 -68697734 + MT2B LTR ERVL 128 257 -344 1 985 600 169 12 9 chr12 52559702 52559816 -68697714 + B1_Mus1 SINE Alu 9 115 -5 1 123 253 263 0 17 chr12 52559817 52559875 -68697655 + polypurine Low_complexity Low_complexity 1 57 0 1 986 279 71 0 0 chr12 52559925 52559967 -68697563 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 986 450 53 0 0 chr12 52559968 52560025 -68697505 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 1 986 253 100 20 20 chr12 52560036 52560087 -68697443 + (TATG)n Simple_repeat Simple_repeat 3 53 0 1 986 915 276 67 7 chr12 52560110 52560380 -68697150 - B4A SINE B4 -5 287 2 1 986 320 278 44 57 chr12 52560647 52560876 -68696654 + L1M2a LINE L1 1960 2185 -4983 1 986 385 254 97 72 chr12 52561173 52561431 -68696099 + L1M2a LINE L1 3104 3388 -3776 1 986 489 319 12 24 chr12 52561431 52561595 -68695935 + RSINE1 SINE B4 4 165 0 1 986 338 268 61 93 chr12 52561595 52561663 -68695867 + L1M2a LINE L1 3389 3455 -3709 1 986 751 173 83 0 chr12 52561667 52561800 -68695730 + B1_Mur2 SINE Alu 1 144 -5 1 986 204 237 0 0 chr12 52561830 52561868 -68695662 + (ATG)n Simple_repeat Simple_repeat 3 40 0 1 986 549 271 90 37 chr12 52561892 52562080 -68695450 + B3A SINE B2 1 198 0 1 986 387 281 146 44 chr12 52562164 52562498 -68695032 + L1M2a LINE L1 3519 3887 -3011 1 986 796 66 194 16 chr12 52562498 52562622 -68694908 + B1_Mus2 SINE Alu 2 147 0 1 986 250 235 18 95 chr12 52562622 52562720 -68694810 + L1M2a LINE L1 3888 3971 -2933 1 986 24 32 0 0 chr12 52562885 52562916 -68694614 + AT_rich Low_complexity Low_complexity 1 31 0 1 986 387 0 0 0 chr12 52563121 52563164 -68694366 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 986 2881 217 68 14 chr12 52563468 52564293 -68693237 + Lx7 LINE L1 524 1390 -4490 1 986 4731 149 49 58 chr12 52564291 52564824 -68692706 + Lx7 LINE L1 4190 4740 -1140 1 986 1155 88 0 0 chr12 52564824 52564971 -68692559 + B1_Mm SINE Alu 1 147 0 1 986 4731 149 49 58 chr12 52564971 52565423 -68692107 + Lx7 LINE L1 4741 5166 -714 1 986 624 159 206 63 chr12 52565422 52565597 -68691933 + Lx7 LINE L1 5639 5838 -1858 1 986 3747 63 15 2 chr12 52565598 52566076 -68691454 + L1_Mus1 LINE L1 6078 6561 -6 1 986 1249 72 15 49 chr12 52566126 52566330 -68691200 + L1_Mus3 LINE L1 6438 6634 -4 1 986 6851 196 97 19 chr12 52566337 52567705 -68689825 + Lx7 LINE L1 6069 7548 -148 1 986 180 0 0 0 chr12 52567705 52567725 -68689805 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1 986 6851 196 97 19 chr12 52567725 52567867 -68689663 + Lx7 LINE L1 7549 7695 -1 1 986 1161 88 0 0 chr12 52568054 52568201 -68689329 + B1_Mus2 SINE Alu 1 147 0 1 986 210 71 0 0 chr12 52568202 52568230 -68689300 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1 986 241 262 0 0 chr12 52568395 52568456 -68689074 + MTD LTR MaLR 26 86 -335 1 986 1301 210 110 44 chr12 52568660 52568802 -68688728 + MTD LTR MaLR 42 193 -226 1 986 1140 58 0 0 chr12 52568802 52568940 -68688590 + B1_Mm SINE Alu 1 138 -9 1 986 228 35 0 0 chr12 52568940 52568969 -68688561 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 986 1301 188 79 51 chr12 52568969 52569174 -68688356 + MTD LTR MaLR 176 413 -6 1 986 396 0 0 0 chr12 52569190 52569234 -68688296 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 986 4360 59 2 0 chr12 52569361 52569900 -68687630 - L1_Mus1 LINE L1 -74 5809 5270 1 986 5880 65 0 13 chr12 52569900 52570835 -68686695 + L1_Mus1 LINE L1 5824 6567 0 1 986 413 116 0 14 chr12 52570844 52570914 -68686616 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 1 986 665 204 111 50 chr12 52571711 52571892 -68685638 - B3A SINE B2 -6 192 1 1 986 1161 270 166 25 chr12 52573104 52573391 -68684139 + RCHARR1 DNA MER1_type 3 348 -626 1 986 3268 55 5 0 chr12 52573391 52573789 -68683741 + MTB LTR MaLR 1 400 0 1 986 1161 270 166 25 chr12 52573789 52573984 -68683546 + RCHARR1 DNA MER1_type 349 553 -421 1 986 3630 243 93 11 chr12 52573987 52574908 -68682622 + Lx6 LINE L1 6253 7441 -19 1 986 670 186 156 21 chr12 52574914 52575106 -68682424 + RCHARR1 DNA MER1_type 524 741 -233 1 986 1308 65 0 0 chr12 52575106 52575275 -68682255 + L1Md_T LINE L1 6414 6582 0 1 986 417 70 0 0 chr12 52575323 52575380 -68682150 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 986 260 161 16 0 chr12 52575380 52575442 -68682088 + RCHARR1 DNA MER1_type 825 887 -87 1 986 296 348 18 9 chr12 52576089 52576202 -68681328 + MIR SINE MIR 32 145 -117 1 986 737 273 189 20 chr12 52577324 52577679 -68679851 + MTD LTR MaLR 1 405 -14 1 986 273 29 0 0 chr12 52577842 52577876 -68679654 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 1 986 610 328 91 43 chr12 52578740 52579138 -68678392 + RLTR26 LTR ERVK 1 417 -225 1 986 1908 167 125 8 chr12 52579398 52579773 -68677757 - MTD LTR MaLR 0 419 1 1 986 1270 34 0 0 chr12 52580108 52580255 -68677275 + B1_Mus2 SINE Alu 1 147 0 1 986 207 100 0 0 chr12 52580256 52580286 -68677244 + (A)n Simple_repeat Simple_repeat 1 30 0 1 986 1076 227 13 1 chr12 52580522 52580790 -68676740 - Lx7 LINE L1 -1786 5910 5607 1 986 1229 301 115 22 chr12 52580803 52581626 -68675904 + L1M2 LINE L1 4500 5399 -744 1 986 1620 232 49 5 chr12 52582184 52582574 -68674956 - MTD LTR MaLR 0 419 13 1 986 202 323 31 0 chr12 52582799 52582895 -68674635 - MIRb SINE MIR -59 209 111 1 986 630 249 151 5 chr12 52584258 52584464 -68673066 - Lx8 LINE L1 -73 7400 7165 1 986 857 251 24 31 chr12 52584569 52584861 -68672669 + L1_Mur3 LINE L1 2556 2845 -3035 1 986 231 114 0 0 chr12 52584868 52584903 -68672627 + (T)n Simple_repeat Simple_repeat 1 35 0 1 986 1029 65 0 0 chr12 52584903 52585042 -68672488 - B1_Mm SINE Alu 0 147 9 1 986 2679 43 65 0 chr12 52585280 52585605 -68671925 + ORR1A1 LTR MaLR 1 346 0 1 986 10373 48 7 31 chr12 52585605 52586064 -68671466 + ORR1A1-int LTR MaLR 1 456 -1336 1 986 1115 56 35 0 chr12 52586064 52586206 -68671324 + B1_Mus2 SINE Alu 1 147 0 1 986 10373 48 7 31 chr12 52586206 52587251 -68670279 + ORR1A1-int LTR MaLR 457 1468 -324 1 986 4393 17 0 0 chr12 52587251 52587733 -68669797 + LTRIS_Mm LTR ERV1 1 482 0 1 986 37571 17 9 5 chr12 52587733 52592143 -68665387 + MuRRS-int LTR ERV1 1 4662 -28 1 986 2322 58 11 28 chr12 52592143 52592171 -68665359 + ORR1A1-int LTR MaLR 1445 1465 -327 1 986 4387 17 0 0 chr12 52592171 52592653 -68664877 + LTRIS_Mm LTR ERV1 1 482 0 1 986 2322 58 11 28 chr12 52592653 52592978 -68664552 + ORR1A1-int LTR MaLR 1466 1792 0 1 986 204 40 0 0 chr12 52593816 52593841 -68663689 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1 986 1032 264 123 24 chr12 52594052 52594209 -68663321 + MTE2b LTR MaLR 1 161 -218 1 986 324 0 0 0 chr12 52594209 52594245 -68663285 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 1 986 1032 264 123 24 chr12 52594245 52594421 -68663109 + MTE2b LTR MaLR 162 366 -13 1 986 411 203 97 48 chr12 52596219 52596343 -68661187 + L1MCc LINE L1 18 147 -6276 1 986 512 221 125 0 chr12 52596730 52596834 -68660696 + B1_Mur1 SINE Alu 1 117 -32 1 986 251 312 35 7 chr12 52597022 52597164 -68660366 + L1MCc LINE L1 1717 1862 -5175 1 986 306 0 0 0 chr12 52597319 52597353 -68660177 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 986 1353 72 0 16 chr12 52597673 52597857 -68659673 - B2_Mm2 SINE B2 -14 181 1 1 986 328 252 28 55 chr12 52597971 52598080 -68659450 + B4A SINE B4 179 284 -8 1 986 3318 46 5 0 chr12 52598200 52598594 -68658936 + MTA_Mm LTR MaLR 1 396 0 1 986 226 283 144 72 chr12 52598664 52598858 -68658672 + B4 SINE B4 8 215 -77 1 986 183 313 0 0 chr12 52598910 52599025 -68658505 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 986 397 256 33 0 chr12 52599036 52599126 -68658404 + PB1D10 SINE Alu 20 112 -5 1 986 1072 266 126 30 chr12 52599259 52599797 -68657733 + L1MCc LINE L1 3448 4037 -2904 1 986 332 317 76 38 chr12 52600051 52600339 -68657191 + L1MCc LINE L1 5135 5436 -1505 1 986 732 243 110 6 chr12 52600339 52600521 -68657009 + B3 SINE B2 1 201 -15 1 986 332 317 76 38 chr12 52600521 52600547 -68656983 + L1MCc LINE L1 5437 5461 -1480 1 986 260 273 114 16 chr12 52600759 52600882 -68656648 + L1MCc LINE L1 5770 5904 -1037 1 986 783 193 204 0 chr12 52600894 52601070 -68656460 + B3 SINE B2 2 213 -3 1 986 1391 201 118 27 chr12 52601145 52601519 -68656011 - MTD LTR MaLR 0 419 12 1 986 1423 71 39 0 chr12 52601851 52602033 -68655497 + B2_Mm2 SINE B2 1 189 -6 1 986 537 220 199 14 chr12 52602845 52603124 -68654406 + ORR1D2 LTR MaLR 1 366 -4 1 986 1995 187 20 20 chr12 52603134 52603538 -68653992 + MTD LTR MaLR 1 404 -15 1 986 890 230 33 5 chr12 52604329 52604539 -68652991 - ID_B1 SINE B4 -1 223 8 1 986 441 0 0 0 chr12 52605567 52605616 -68651914 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 986 199 317 17 0 chr12 52606365 52606425 -68651105 + L2b LINE L2 3294 3354 -21 1 986 189 0 0 0 chr12 52607460 52607481 -68650049 + (C)n Simple_repeat Simple_repeat 1 21 0 1 986 1310 79 0 0 chr12 52608185 52608363 -68649167 + L1Md_F2 LINE L1 6393 6570 -12 1 986 512 294 8 16 chr12 52610244 52610426 -68647104 - L1MB3 LINE L1 -274 6026 5855 1 986 195 275 116 0 chr12 52610460 52610529 -68647001 + L3b LINE CR1 169 245 -237 1 986 384 247 65 0 chr12 52612674 52612767 -68644763 + PB1 SINE Alu 19 117 -10 1 986 228 35 0 0 chr12 52612773 52612802 -68644728 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 986 349 234 53 0 chr12 52613291 52613385 -68644145 + MER58A DNA MER1_type 14 112 -112 1 986 1400 280 45 27 chr12 52613656 52614273 -68643257 + L1MA5 LINE L1 4790 5430 -867 1 986 712 312 69 18 chr12 52614274 52614607 -68642923 - RLTR23 LTR ERV1 0 430 81 1 986 459 206 11 21 chr12 52614692 52614786 -68642744 - RLTR23 LTR ERV1 -330 100 8 1 986 1014 288 60 5 chr12 52614808 52615189 -68642341 + L1MA5 LINE L1 5428 5829 -471 1 986 495 312 65 0 chr12 52615190 52615344 -68642186 + RSINE1 SINE B4 2 165 0 1 986 335 224 102 23 chr12 52615353 52615481 -68642049 + Lx8 LINE L1 5768 5905 -1568 1 986 22 56 0 0 chr12 52615617 52615653 -68641877 + AT_rich Low_complexity Low_complexity 1 36 0 1 986 594 250 45 6 chr12 52615731 52615888 -68641642 + RSINE1 SINE B4 1 163 -2 1 986 515 285 0 27 chr12 52616125 52616273 -68641257 + B1F2 SINE Alu 1 144 -5 1 986 289 273 121 6 chr12 52616368 52616534 -68640996 + L1M5 LINE L1 4071 4255 -1891 1 986 550 183 0 46 chr12 52616785 52616887 -68640643 + B1_Mur2 SINE Alu 6 104 -45 1 986 324 0 0 0 chr12 52616887 52616923 -68640607 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 986 2200 147 21 52 chr12 52617011 52617399 -68640131 - ORR1C1 LTR MaLR 0 378 3 2 986 208 79 53 0 chr12 52617400 52617438 -68640092 + (CTATG)n Simple_repeat Simple_repeat 3 42 0 2 986 802 264 138 6 chr12 52617657 52617961 -68639569 - MTE2b LTR MaLR -2 357 26 2 986 532 229 157 0 chr12 52620660 52620800 -68636730 + RSINE1 SINE B4 2 163 -2 2 986 3081 44 18 13 chr12 52621032 52621424 -68636106 - MTA_Mm LTR MaLR 0 396 3 2 986 571 262 115 6 chr12 52621425 52621590 -68635940 + B4A SINE B4 20 202 -90 2 986 1021 129 0 0 chr12 52621807 52621962 -68635568 + B2_Mm2 SINE B2 1 155 -40 2 986 186 43 0 0 chr12 52621962 52621985 -68635545 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 986 793 201 63 25 chr12 52622003 52622161 -68635369 + RSINE1 SINE B4 2 165 0 2 986 616 261 228 29 chr12 52622411 52622723 -68634807 + MTEb LTR MaLR 6 379 0 2 986 3796 149 66 3 chr12 52622829 52623480 -68634050 + RLTR17 LTR ERVK 1 692 0 2 986 530 271 37 72 chr12 52623619 52623853 -68633677 - L1MA5A LINE L1 -416 5881 5621 2 986 352 169 0 13 chr12 52623860 52623938 -68633592 + L1M2 LINE L1 5354 5430 -867 2 986 413 333 40 27 chr12 52623946 52624094 -68633436 + RSINE1 SINE B4 2 151 -14 2 986 501 228 39 58 chr12 52624104 52624258 -68633272 + L1M2 LINE L1 5445 5595 -705 2 986 330 284 9 81 chr12 52624258 52624270 -68633260 + MT2B LTR ERVL 155 158 -443 2 986 676 200 69 0 chr12 52624270 52624400 -68633130 + B1_Mus2 SINE Alu 4 142 -5 2 986 507 230 19 63 chr12 52625517 52625675 -68631855 + RSINE1 SINE B4 3 153 -12 2 986 3320 256 75 23 chr12 52625814 52626866 -68630664 + Lx9 LINE L1 6406 7512 -132 2 986 302 95 0 86 chr12 52626873 52626954 -68630576 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 2 986 281 257 54 0 chr12 52626974 52627048 -68630482 + RSINE1 SINE B4 11 88 -77 2 986 22 56 0 0 chr12 52627145 52627181 -68630349 + AT_rich Low_complexity Low_complexity 1 36 0 2 986 811 196 7 27 chr12 52627181 52627328 -68630202 + B1_Mus2 SINE Alu 1 144 -3 2 986 821 164 23 0 chr12 52627414 52627542 -68629988 + B1_Mur2 SINE Alu 2 132 -17 2 986 315 0 0 0 chr12 52627551 52627586 -68629944 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 986 207 0 0 0 chr12 52627886 52627909 -68629621 + (A)n Simple_repeat Simple_repeat 1 23 0 2 986 2270 123 9 6 chr12 52627931 52628259 -68629271 - ORR1A4 LTR MaLR 0 329 1 2 986 25 51 0 0 chr12 52628294 52628333 -68629197 + AT_rich Low_complexity Low_complexity 1 39 0 2 986 330 303 30 20 chr12 52628358 52628459 -68629071 - RSINE1 SINE B4 -62 103 2 2 986 304 0 0 0 chr12 52628752 52628827 -68628703 - L1Md_T LINE L1 0 6582 6540 2 986 459 203 146 29 chr12 52629260 52629397 -68628133 + ID_B1 SINE B4 63 215 -9 2 986 1236 120 33 0 chr12 52629481 52629665 -68627865 - B2_Mm1t SINE B2 -2 191 2 2 986 357 82 0 0 chr12 52630056 52630105 -68627425 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 986 1193 55 7 0 chr12 52630123 52630268 -68627262 + B1_Mus2 SINE Alu 2 147 0 2 986 678 82 0 0 chr12 52630270 52630368 -68627162 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 2 986 210 71 0 0 chr12 52630617 52630645 -68626885 + (TCC)n Simple_repeat Simple_repeat 3 30 0 2 986 274 207 216 11 chr12 52631249 52631337 -68626193 - U6 snRNA snRNA -1 106 1 2 986 339 264 18 28 chr12 52631472 52631581 -68625949 + ORR1E LTR MaLR 40 147 -212 2 986 1264 44 0 0 chr12 52632424 52632584 -68624946 + B2_Mm1t SINE B2 1 160 -33 2 986 270 0 0 0 chr12 52632584 52632614 -68624916 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2 986 190 286 99 14 chr12 52632656 52632727 -68624803 + MIRc SINE MIR 48 124 -144 2 986 632 224 0 70 chr12 52633006 52633164 -68624366 + RSINE1 SINE B4 3 149 -16 2 986 440 234 31 39 chr12 52633943 52634072 -68623458 + B1F SINE Alu 22 149 0 2 986 311 239 30 0 chr12 52634467 52634549 -68622981 + PB1D10 SINE Alu 28 113 -36 2 986 291 184 0 0 chr12 52634869 52634918 -68622612 + B1_Mur2 SINE Alu 98 146 -3 2 986 3904 178 24 41 chr12 52635220 52635974 -68621556 + Lx5 LINE L1 6302 7042 -8 2 986 446 136 12 0 chr12 52635975 52636056 -68621474 + (CAGA)n Simple_repeat Simple_repeat 2 83 0 2 986 304 282 118 0 chr12 52636781 52636891 -68620639 - L2 LINE L2 -2230 1189 1067 2 986 715 49 20 0 chr12 52637080 52637100 -68620430 + (GAA)n Simple_repeat Simple_repeat 3 23 0 2 986 1247 79 6 0 chr12 52637100 52637277 -68620253 + (GGA)n Simple_repeat Simple_repeat 3 180 0 2 986 715 49 20 0 chr12 52637277 52637358 -68620172 + (GAA)n Simple_repeat Simple_repeat 3 84 0 2 986 653 203 308 44 chr12 52637509 52637824 -68619706 - L1M3 LINE L1 -631 5669 5272 2 986 1138 82 0 0 chr12 52637824 52637971 -68619559 - B1_Mus2 SINE Alu 0 147 1 2 986 408 251 39 82 chr12 52637971 52638121 -68619409 - L1M3 LINE L1 -866 5274 5126 2 986 538 279 31 31 chr12 52638293 52638452 -68619078 - Lx8 LINE L1 -185 7288 7130 2 986 466 359 29 17 chr12 52638924 52639162 -68618368 + MER44B DNA MER2_type 1 240 -310 2 986 491 250 65 14 chr12 52639202 52639340 -68618190 - MTEa LTR MaLR -207 172 28 2 986 987 46 122 0 chr12 52639368 52639499 -68618031 + B1_Mus2 SINE Alu 1 147 0 2 986 635 288 70 50 chr12 52639503 52639803 -68617727 + MER44B DNA MER2_type 244 549 -1 2 986 1046 172 30 15 chr12 52639851 52640052 -68617478 + B3 SINE B2 5 208 -8 2 986 692 238 52 6 chr12 52642834 52643007 -68614523 - B3A SINE B2 -13 185 5 2 986 3056 59 20 5 chr12 52643178 52643572 -68613958 + MTB LTR MaLR 1 400 0 2 986 300 248 172 67 chr12 52643804 52643938 -68613592 + B3A SINE B2 63 210 -6 2 986 369 219 0 0 chr12 52644002 52644116 -68613414 + (TG)n Simple_repeat Simple_repeat 2 115 0 2 986 2049 133 0 7 chr12 52645697 52646007 -68611523 - RLTR10E LTR ERVK -3 308 1 2 986 984 59 0 7 chr12 52646007 52646144 -68611386 - MTB_Mm LTR MaLR -11 396 261 2 986 379 252 16 57 chr12 52646405 52646527 -68611003 - PB1D10 SINE Alu 0 117 1 2 986 265 282 92 60 chr12 52647135 52647320 -68610210 + MLT1A LTR MaLR 79 269 -105 2 986 443 261 171 19 chr12 52648581 52648737 -68608793 + L1MA8 LINE L1 6026 6217 -74 2 986 351 0 0 0 chr12 52648737 52648776 -68608754 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 986 347 41 20 0 chr12 52648777 52648826 -68608704 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 986 443 261 171 19 chr12 52648826 52648878 -68608652 + L1MA8 LINE L1 6218 6268 -23 2 986 590 196 19 0 chr12 52648903 52649010 -68608520 + B1_Mur4 SINE Alu 1 109 -41 2 986 186 133 0 0 chr12 52649022 52649052 -68608478 + (CAT)n Simple_repeat Simple_repeat 2 31 0 2 986 247 300 26 110 chr12 52649159 52649350 -68608180 - MTEa LTR MaLR 0 379 205 2 986 1887 184 27 21 chr12 52649607 52649979 -68607551 - ORR1D1 LTR MaLR 0 374 1 2 986 3123 201 111 57 chr12 52649979 52650140 -68607390 - ORR1D1-int LTR MaLR 0 1370 1196 2 986 762 196 7 7 chr12 52650140 52650279 -68607251 + B1_Mur2 SINE Alu 1 139 -10 2 986 3123 190 132 39 chr12 52650279 52651261 -68606269 - ORR1D1-int LTR MaLR -175 1195 20 2 986 460 168 48 19 chr12 52651267 52651370 -68606160 - ORR1D1 LTR MaLR 0 374 269 2 986 2472 37 6 6 chr12 52651632 52651958 -68605572 - IAPEY2_LTR LTR ERVK 0 357 32 2 986 3562 64 56 1 chr12 52651968 52652701 -68604829 - IAPEY3-int LTR ERVK 0 7680 6908 2 986 704 119 10 0 chr12 52652701 52652802 -68604728 - IAPEY3-int LTR ERVK -4393 3287 3186 2 986 2267 42 0 0 chr12 52652794 52653057 -68604473 - IAPEY3-int LTR ERVK -2635 5045 4783 2 986 13861 109 9 27 chr12 52653052 52655063 -68602467 - IAPEY3-int LTR ERVK -5183 2497 524 2 986 813 118 50 44 chr12 52655062 52655221 -68602309 - IAPLTR4_I LTR ERVK -1290 180 21 2 986 2480 82 3 18 chr12 52655222 52655557 -68601973 - IAPEY3_LTR LTR ERVK -2 330 1 2 986 1720 235 108 58 chr12 52656230 52656813 -68600717 + RLTR18 LTR ERVK 1 612 -4 2 986 345 24 0 0 chr12 52656824 52656866 -68600664 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 986 437 0 0 19 chr12 52657118 52657172 -68600358 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 2 986 232 269 26 0 chr12 52657179 52657257 -68600273 - PB1D10 SINE Alu -21 96 17 2 986 1145 68 6 22 chr12 52657306 52657486 -68600044 + (TTCCC)n Simple_repeat Simple_repeat 1 177 0 2 986 1225 83 0 11 chr12 52657502 52657684 -68599846 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 2 986 920 92 0 49 chr12 52657693 52657800 -68599730 + (TCCCC)n Simple_repeat Simple_repeat 3 103 0 2 986 1193 67 0 27 chr12 52657800 52657985 -68599545 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 2 986 920 92 0 49 chr12 52657985 52658060 -68599470 + (TCCCC)n Simple_repeat Simple_repeat 5 77 0 2 986 336 237 51 10 chr12 52658071 52658169 -68599361 + CT-rich Low_complexity Low_complexity 6 107 0 2 986 249 33 0 0 chr12 52658381 52658411 -68599119 + (CAGGA)n Simple_repeat Simple_repeat 2 31 0 2 986 1740 162 87 24 chr12 52658411 52658791 -68598739 - RMER10A LTR ERVL -35 407 4 2 986 180 0 0 0 chr12 52659212 52659232 -68598298 + (A)n Simple_repeat Simple_repeat 1 20 0 2 986 392 247 0 41 chr12 52659278 52659375 -68598155 + RSINE1 SINE B4 15 107 -58 2 986 778 111 87 22 chr12 52659716 52659854 -68597676 + B1_Mur4 SINE Alu 2 148 -2 2 986 251 164 16 16 chr12 52660239 52660326 -68597204 + (TTGG)n Simple_repeat Simple_repeat 1 87 0 2 986 566 197 7 0 chr12 52660342 52660479 -68597051 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 986 453 209 67 0 chr12 52661128 52661233 -68596297 + B1_Mur1 SINE Alu 12 123 -26 2 986 677 257 20 35 chr12 52661244 52661442 -68596088 + B3A SINE B2 1 195 -3 2 986 602 198 72 0 chr12 52661444 52661555 -68595975 - B1_Mus1 SINE Alu -6 142 24 2 986 221 175 0 0 chr12 52661555 52661595 -68595935 + A-rich Low_complexity Low_complexity 1 40 0 2 986 252 340 90 0 chr12 52661595 52661739 -68595791 + L1_Mm LINE L1 4431 4592 -1291 2 986 21 0 0 0 chr12 52661739 52661760 -68595770 + AT_rich Low_complexity Low_complexity 1 21 0 2 986 969 155 0 0 chr12 52661773 52662002 -68595528 + (TA)n Simple_repeat Simple_repeat 1 229 0 2 986 790 308 112 28 chr12 52662007 52662545 -68594985 + L1M2 LINE L1 4639 5221 -922 3 986 218 319 145 22 chr12 52662603 52662741 -68594789 + RSINE1 SINE B4 11 165 0 3 986 832 158 21 7 chr12 52662797 52662937 -68594593 - B1_Mur4 SINE Alu -7 143 2 3 986 1535 224 112 0 chr12 52662981 52663356 -68594174 + MTD LTR MaLR 1 417 -2 3 986 376 212 0 0 chr12 52663358 52663438 -68594092 + L1_Mur2 LINE L1 5370 5449 -428 3 986 641 235 25 61 chr12 52663438 52663601 -68593929 + Lx9 LINE L1 6972 7128 -516 3 986 437 319 124 6 chr12 52663596 52663783 -68593747 + Lx9 LINE L1 7040 7377 -267 3 986 42 0 0 19 chr12 52663820 52663852 -68593678 + AT_rich Low_complexity Low_complexity 1 32 0 3 986 1142 94 33 22 chr12 52663852 52664036 -68593494 + B2_Mm2 SINE B2 1 186 -9 3 986 42 0 0 19 chr12 52664036 52664056 -68593474 + AT_rich Low_complexity Low_complexity 1 20 0 3 986 186 43 0 0 chr12 52664913 52664936 -68592594 + (CTG)n Simple_repeat Simple_repeat 1 23 0 3 986 294 0 43 21 chr12 52665270 52665317 -68592213 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 3 986 796 122 81 8 chr12 52665320 52665444 -68592086 - B1_Mus1 SINE Alu -14 134 2 3 986 189 0 0 0 chr12 52665457 52665478 -68592052 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 986 1018 318 17 17 chr12 52665481 52666006 -68591524 + L1_Mur3 LINE L1 4139 4663 -1217 3 986 180 135 0 0 chr12 52666038 52666075 -68591455 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 3 986 1201 48 0 14 chr12 52666075 52666223 -68591307 - B1_Mus2 SINE Alu 0 147 2 3 986 3741 79 13 11 chr12 52666292 52666832 -68590698 - MusHAL1 LINE L1 -1585 1127 587 3 986 1002 96 19 15 chr12 52666832 52667011 -68590519 + ORR1C2 LTR MaLR 13 182 -192 3 986 273 223 0 0 chr12 52667013 52667107 -68590423 + CT-rich Low_complexity Low_complexity 1 94 0 3 986 1069 132 42 10 chr12 52667128 52667320 -68590210 + ORR1C2 LTR MaLR 185 382 -2 3 986 317 253 11 11 chr12 52667962 52668054 -68589476 + ID_B1 SINE B4 78 169 -55 3 986 1113 115 0 10 chr12 52668044 52668237 -68589293 + RMER17C LTR ERVK 220 410 0 3 986 337 264 252 26 chr12 52669710 52669936 -68587594 + B4 SINE B4 16 292 0 3 986 363 60 0 0 chr12 52670026 52670076 -68587454 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 986 1321 263 34 43 chr12 52670268 52670685 -68586845 - MTD LTR MaLR 0 419 7 3 986 459 0 0 0 chr12 52670805 52670856 -68586674 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 986 899 192 58 11 chr12 52671036 52671225 -68586305 + B3 SINE B2 2 199 -17 3 986 307 0 0 94 chr12 52672229 52672282 -68585248 + (TTAA)n Simple_repeat Simple_repeat 4 51 0 3 986 194 100 75 0 chr12 52672586 52672626 -68584904 + C-rich Low_complexity Low_complexity 1 43 0 3 986 274 231 77 53 chr12 52672626 52672795 -68584735 - L1MA6 LINE L1 -279 6021 5849 3 986 321 240 163 0 chr12 52672803 52672932 -68584598 + L1_Mur2 LINE L1 4119 4268 -1609 3 986 1803 231 136 32 chr12 52672955 52673484 -68584046 + Lx8 LINE L1 6316 6899 -574 3 986 472 252 75 8 chr12 52673534 52673704 -68583826 + L1MA4 LINE L1 5788 5961 -195 3 986 180 152 0 0 chr12 52673704 52673737 -68583793 + (CATA)n Simple_repeat Simple_repeat 3 35 0 3 986 187 122 25 63 chr12 52674654 52674733 -68582797 + A-rich Low_complexity Low_complexity 1 76 0 3 986 1167 291 98 31 chr12 52674760 52675302 -68582228 + L1M2 LINE L1 4447 5024 -1119 3 986 672 158 117 29 chr12 52675590 52675727 -68581803 + B1_Mur3 SINE Alu 1 149 0 3 986 390 42 0 0 chr12 52675729 52675777 -68581753 + (GAGAA)n Simple_repeat Simple_repeat 2 49 0 3 986 314 169 0 15 chr12 52675773 52675809 -68581721 + G-rich Low_complexity Low_complexity 6 41 0 3 986 1014 157 0 0 chr12 52675809 52675987 -68581543 + GA-rich Low_complexity Low_complexity 1 178 0 3 986 314 169 0 15 chr12 52675987 52676016 -68581514 + G-rich Low_complexity Low_complexity 42 70 0 3 986 1563 39 0 0 chr12 52676108 52676289 -68581241 - L1Md_F2 LINE L1 -775 5807 5627 3 986 3525 53 0 16 chr12 52676288 52676760 -68580770 + L1Md_F2 LINE L1 6126 6582 0 3 986 527 79 0 0 chr12 52676922 52676998 -68580532 + MT2C_Mm LTR ERVL 400 475 0 3 986 13912 49 16 19 chr12 52676998 52677842 -68579688 + ORR1A0-int LTR MaLR 1 873 -919 3 986 1270 34 0 0 chr12 52677842 52677989 -68579541 + B1_Mus2 SINE Alu 1 147 0 3 986 13912 49 16 19 chr12 52677989 52678942 -68578588 + ORR1A0-int LTR MaLR 874 1792 0 3 986 2583 58 36 12 chr12 52678942 52679276 -68578254 + ORR1A0 LTR MaLR 1 342 -4 3 986 505 224 0 49 chr12 52680493 52680615 -68576915 + PB1D10 SINE Alu 2 117 0 3 986 283 282 98 15 chr12 52680715 52680848 -68576682 + ID_B1 SINE B4 81 224 0 3 986 290 283 153 1 chr12 52680982 52681080 -68576450 + PB1 SINE Alu 1 116 -11 3 986 332 200 128 37 chr12 52681464 52681573 -68575957 + MER105 DNA DNA 27 145 -59 3 986 561 90 0 0 chr12 52681611 52681700 -68575830 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 986 526 239 90 14 chr12 52681760 52681904 -68575626 + B3A SINE B2 17 171 -27 3 986 644 239 28 21 chr12 52681993 52682007 -68575523 - B1_Mur2 SINE Alu -1 148 137 3 986 222 37 0 0 chr12 52682007 52682034 -68575496 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 3 986 644 239 28 21 chr12 52682034 52682164 -68575366 - B1_Mur2 SINE Alu -13 136 3 3 986 2951 12 0 0 chr12 52682164 52682490 -68575040 + IAPLTR3 LTR ERVK 1 326 0 3 986 342 320 24 0 chr12 52682662 52682787 -68574743 + L1MC5 LINE L1 7302 7429 -532 3 986 488 211 167 0 chr12 52682848 52682962 -68574568 + B1F2 SINE Alu 17 149 0 3 986 1256 152 23 14 chr12 52682968 52683182 -68574348 + B3 SINE B2 1 216 0 3 986 1154 317 82 38 chr12 52683186 52684062 -68573468 - L1M2 LINE L1 -3267 2876 1979 3 986 766 208 0 20 chr12 52684062 52684214 -68573316 + B1_Mur1 SINE Alu 1 149 0 3 986 608 329 64 98 chr12 52684214 52684779 -68572751 - L1M2 LINE L1 -3902 1978 1452 3 986 24 32 0 0 chr12 52684934 52684965 -68572565 + AT_rich Low_complexity Low_complexity 1 31 0 3 986 5868 116 35 14 chr12 52684974 52685893 -68571637 + Lx2B LINE L1 6049 6986 -14 3 986 369 0 0 0 chr12 52686292 52686333 -68571197 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 986 1889 138 88 14 chr12 52686339 52686691 -68570839 + ORR1C1 LTR MaLR 1 378 0 3 986 336 185 57 124 chr12 52686814 52686895 -68570635 + ID_B1 SINE B4 127 213 -11 3 986 768 200 7 0 chr12 52686895 52687040 -68570490 + B1_Mus1 SINE Alu 3 148 0 3 986 336 185 57 124 chr12 52687040 52687063 -68570467 + ID_B1 SINE B4 214 224 0 3 986 364 278 96 14 chr12 52687138 52687346 -68570184 + L1_Mur3 LINE L1 2127 2351 -3529 3 986 1831 163 34 6 chr12 52687346 52687672 -68569858 + RMER4A LTR ERVK 1 335 -131 3 986 365 117 238 38 chr12 52687672 52687752 -68569778 + B2_Mm2 SINE B2 2 97 -98 3 986 711 185 7 0 chr12 52687744 52687879 -68569651 - RMER4A LTR ERVK -269 197 62 3 986 553 78 0 0 chr12 52687872 52687949 -68569581 + B2_Mm1t SINE B2 102 178 -15 3 986 1415 39 0 6 chr12 52687949 52688128 -68569402 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 986 1176 75 0 0 chr12 52688142 52688288 -68569242 + B1_Mm SINE Alu 1 146 -1 3 986 825 103 58 52 chr12 52688288 52688311 -68569219 + RMER4A LTR ERVK 312 332 -134 3 986 249 33 0 0 chr12 52688311 52688341 -68569189 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 3 986 297 0 0 0 chr12 52688344 52688377 -68569153 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 986 357 24 0 0 chr12 52688377 52688418 -68569112 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 986 825 103 58 52 chr12 52688418 52688543 -68568987 + RMER4A LTR ERVK 333 465 -1 3 986 451 310 60 26 chr12 52688543 52688811 -68568719 + L1_Mur3 LINE L1 2346 2622 -3258 3 986 183 156 0 0 chr12 52688953 52688985 -68568545 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 986 293 312 0 0 chr12 52688985 52689049 -68568481 - RSINE1 SINE B4 -2 163 100 3 986 214 345 91 0 chr12 52689095 52689205 -68568325 + B3 SINE B2 67 186 -30 3 986 785 199 7 0 chr12 52689229 52689370 -68568160 + B1_Mus2 SINE Alu 6 147 0 3 986 637 306 148 43 chr12 52689423 52690124 -68567406 + L1_Rod LINE L1 4975 5757 -90 3 986 1286 77 49 0 chr12 52690124 52690282 -68567248 + B2_Mm1a SINE B2 2 160 -33 3 986 294 29 0 0 chr12 52690282 52690317 -68567213 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 986 1286 77 49 0 chr12 52690317 52690341 -68567189 + B2_Mm1a SINE B2 161 192 -1 3 986 637 306 148 43 chr12 52690341 52690364 -68567166 + L1_Rod LINE L1 5758 5775 -72 3 986 692 207 120 42 chr12 52690404 52690621 -68566909 - MTE2a LTR MaLR -1 378 145 3 986 234 283 65 0 chr12 52690823 52690915 -68566615 - MTE2a LTR MaLR -321 98 1 3 987 670 257 114 24 chr12 52690954 52691165 -68566365 - Lx6 LINE L1 -27 7433 7204 3 987 2780 147 76 4 chr12 52691164 52691664 -68565866 + L1_Mur2 LINE L1 4571 5106 -771 3 987 461 242 24 67 chr12 52691702 52691866 -68565664 - RSINE1 SINE B4 0 165 9 3 987 310 307 63 38 chr12 52692020 52692179 -68565351 + MER5B DNA MER1_type 13 175 -3 3 987 430 276 134 32 chr12 52693124 52693371 -68564159 + L1MB8 LINE L1 5905 6176 -2 3 987 302 236 57 11 chr12 52693381 52693489 -68564041 + PB1D10 SINE Alu 1 120 0 3 987 210 37 0 0 chr12 52693493 52693520 -68564010 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 987 180 0 0 0 chr12 52694731 52694751 -68562779 + (CTG)n Simple_repeat Simple_repeat 3 22 0 3 987 527 301 20 10 chr12 52696685 52696880 -68560650 - B3A SINE B2 0 198 2 3 987 207 0 0 0 chr12 52698431 52698454 -68559076 + (A)n Simple_repeat Simple_repeat 1 23 0 3 987 487 304 38 56 chr12 52698508 52698721 -68558809 - B3 SINE B2 -6 210 2 3 987 654 170 43 140 chr12 52699427 52699591 -68557939 + B1_Mur1 SINE Alu 2 149 0 3 987 1647 53 14 0 chr12 52699597 52699805 -68557725 + L1Md_F2 LINE L1 6369 6579 -3 3 987 24 0 0 0 chr12 52699808 52699832 -68557698 + AT_rich Low_complexity Low_complexity 1 24 0 3 987 206 136 0 22 chr12 52700026 52700071 -68557459 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 987 555 191 9 9 chr12 52701111 52701222 -68556308 - B1_Mus1 SINE Alu -1 147 37 3 987 501 204 46 0 chr12 52701412 52701526 -68556004 - B1_Mur3 SINE Alu 0 127 1 4 987 333 293 71 0 chr12 52701440 52701539 -68555991 - B4 SINE B4 -114 178 73 4 987 827 276 61 9 chr12 52701537 52701767 -68555763 - B4 SINE B4 -1 291 50 4 987 937 184 94 10 chr12 52701906 52702098 -68555432 + B3 SINE B2 2 209 -7 4 987 618 239 40 23 chr12 52702565 52702746 -68554784 - B3 SINE B2 -4 212 25 4 987 818 164 50 0 chr12 52703059 52703199 -68554331 - B1_Mur3 SINE Alu 0 149 3 4 987 805 177 0 28 chr12 52704878 52705023 -68552507 - B1_Mus2 SINE Alu -6 141 1 4 987 24 32 0 0 chr12 52705071 52705102 -68552428 + AT_rich Low_complexity Low_complexity 1 31 0 4 987 802 228 59 16 chr12 52705106 52705293 -68552237 - B3 SINE B2 -21 195 1 4 987 746 180 225 6 chr12 52706785 52706958 -68550572 - B3 SINE B2 -5 211 1 4 987 21 0 0 0 chr12 52707511 52707532 -68549998 + AT_rich Low_complexity Low_complexity 1 21 0 4 987 262 250 53 0 chr12 52707643 52707719 -68549811 - PB1D10 SINE Alu -37 80 1 4 987 226 244 0 0 chr12 52707817 52707862 -68549668 - ID_B1 SINE B4 -5 219 175 4 987 435 264 15 30 chr12 52708458 52708591 -68548939 - B4 SINE B4 -80 212 82 4 987 216 67 0 0 chr12 52708821 52708851 -68548679 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 987 1110 82 6 0 chr12 52708851 52709009 -68548521 - B2_Mm1a SINE B2 -33 160 2 4 987 894 51 0 0 chr12 52709373 52709491 -68548039 + B1_Mus1 SINE Alu 31 148 0 4 987 27 49 0 0 chr12 52709616 52709657 -68547873 + AT_rich Low_complexity Low_complexity 1 41 0 4 987 264 122 0 0 chr12 52710590 52710631 -68546899 + (T)n Simple_repeat Simple_repeat 1 41 0 4 987 285 238 175 0 chr12 52711633 52711759 -68545771 - L1MB5 LINE L1 -180 5994 5847 4 987 24 0 0 0 chr12 52711947 52711971 -68545559 + AT_rich Low_complexity Low_complexity 1 24 0 4 987 371 210 307 14 chr12 52711979 52712119 -68545411 - B3A SINE B2 -16 182 2 4 987 274 253 126 71 chr12 52712160 52712343 -68545187 + RMER15 LTR ERVL 286 478 -97 4 987 325 279 17 35 chr12 52712349 52712464 -68545066 + RMER15 LTR ERVL 418 530 -45 4 987 423 0 0 0 chr12 52712515 52712562 -68544968 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 987 2926 170 87 39 chr12 52712578 52713196 -68544334 + Lx4B LINE L1 5141 5788 -89 4 987 1044 159 149 0 chr12 52713191 52713405 -68544125 + Lx4B LINE L1 6120 6365 -693 4 987 1876 200 102 43 chr12 52713406 52713938 -68543592 + RLTR20B3 LTR ERVK 15 577 0 4 987 3712 129 84 23 chr12 52713938 52714591 -68542939 + Lx4B LINE L1 6366 7058 0 4 987 556 233 138 6 chr12 52714593 52714774 -68542756 - B3 SINE B2 -6 210 6 4 987 220 342 193 0 chr12 52714914 52715028 -68542502 + RSINE1 SINE B4 28 163 -2 4 987 672 221 0 39 chr12 52715035 52715190 -68542340 + B1_Mur4 SINE Alu 1 149 -1 4 987 321 289 0 12 chr12 52715260 52715344 -68542186 - B4A SINE B4 -204 88 6 4 987 242 281 0 15 chr12 52715633 52715698 -68541832 + ID4 SINE ID 11 74 -9 4 987 1130 65 123 12 chr12 52715734 52715904 -68541626 + B2_Mm2 SINE B2 1 189 -6 4 987 261 275 0 54 chr12 52715967 52716057 -68541473 + B3A SINE B2 14 99 -117 4 987 757 264 41 10 chr12 52716250 52716445 -68541085 + B3 SINE B2 9 209 -7 4 987 543 235 96 22 chr12 52716459 52716594 -68540936 - B1_Mus1 SINE Alu -1 147 3 4 987 264 162 14 56 chr12 52716594 52716629 -68540901 + A-rich Low_complexity Low_complexity 4 36 0 4 987 1380 85 26 0 chr12 52716629 52716818 -68540712 + B2_Mm2 SINE B2 2 195 0 4 987 1668 26 5 0 chr12 52716818 52717010 -68540520 + B2_Mm1t SINE B2 1 193 0 4 987 264 162 14 56 chr12 52717010 52717045 -68540485 + A-rich Low_complexity Low_complexity 37 71 0 4 987 2005 144 58 13 chr12 52717322 52717702 -68539828 + MTC LTR MaLR 25 421 0 4 987 749 199 43 0 chr12 52717801 52717942 -68539588 - B1_Mur4 SINE Alu -3 147 1 4 987 21 0 0 0 chr12 52717945 52717966 -68539564 + AT_rich Low_complexity Low_complexity 1 21 0 4 987 236 230 197 26 chr12 52718024 52718100 -68539430 + B3A SINE B2 2 90 -108 4 987 456 51 0 0 chr12 52718110 52718169 -68539361 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 987 23 68 0 0 chr12 52718357 52718401 -68539129 + AT_rich Low_complexity Low_complexity 1 44 0 4 987 333 308 19 0 chr12 52718418 52718522 -68539008 - PB1D7 SINE Alu -11 109 4 4 987 285 98 0 0 chr12 52718563 52718604 -68538926 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 4 987 678 187 43 29 chr12 52718607 52718745 -68538785 - B1_Mur3 SINE Alu -8 141 2 4 987 519 306 47 0 chr12 52719159 52719352 -68538178 - B3 SINE B2 -14 202 1 4 987 556 282 19 39 chr12 52719352 52719507 -68538023 - ID_B1 SINE B4 -67 157 6 4 987 180 97 0 0 chr12 52719565 52719596 -68537934 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 4 987 232 150 0 0 chr12 52719658 52719698 -68537832 + ORR1C2 LTR MaLR 22 61 -323 4 987 248 128 0 0 chr12 52719742 52719781 -68537749 + ORR1C2 LTR MaLR 333 371 -13 4 987 23 0 0 0 chr12 52719793 52719816 -68537714 + AT_rich Low_complexity Low_complexity 1 23 0 4 987 281 322 44 106 chr12 52719920 52720080 -68537450 - B3A SINE B2 -48 150 1 4 987 282 316 68 8 chr12 52720149 52720267 -68537263 + RSINE1 SINE B4 3 127 -38 4 987 28 0 0 0 chr12 52721631 52721659 -68535871 + AT_rich Low_complexity Low_complexity 1 28 0 4 987 312 280 158 35 chr12 52721733 52721992 -68535538 + L1MC4 LINE L1 6792 7082 -960 4 987 667 246 0 27 chr12 52722397 52722543 -68534987 - B1_Mur3 SINE Alu -6 143 2 4 987 215 283 0 0 chr12 52723325 52723371 -68534159 + B4 SINE B4 88 133 -159 4 987 23 78 0 0 chr12 52723650 52723701 -68533829 + AT_rich Low_complexity Low_complexity 1 51 0 4 987 325 247 0 80 chr12 52723740 52723828 -68533702 + RSINE1 SINE B4 3 83 -82 4 987 270 56 0 0 chr12 52723844 52723880 -68533650 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 987 36 23 0 0 chr12 52723883 52723926 -68533604 + AT_rich Low_complexity Low_complexity 1 43 0 4 987 467 283 90 38 chr12 52723941 52724128 -68533402 + B3A SINE B2 16 211 -5 4 987 28 48 0 0 chr12 52724370 52724412 -68533118 + AT_rich Low_complexity Low_complexity 1 42 0 4 987 642 191 93 22 chr12 52724419 52724558 -68532972 + B1_Mur1 SINE Alu 1 149 0 4 987 212 133 22 22 chr12 52724795 52724841 -68532689 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 987 721 179 26 0 chr12 52724845 52724981 -68532549 - B1_Mur4 SINE Alu -7 143 2 4 987 408 40 0 0 chr12 52725084 52725134 -68532396 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 987 396 195 86 34 chr12 52725164 52725281 -68532249 - L1MB8 LINE L1 -316 5862 5740 4 987 23 0 0 0 chr12 52725737 52725760 -68531770 + AT_rich Low_complexity Low_complexity 1 23 0 4 987 260 405 0 0 chr12 52725851 52725977 -68531553 + L2 LINE L2 1916 2041 -1378 4 987 959 141 14 0 chr12 52726458 52726600 -68530930 + B1_Mur4 SINE Alu 1 144 -6 4 987 801 275 20 0 chr12 52726765 52726965 -68530565 - B3 SINE B2 -9 207 4 4 987 956 114 21 0 chr12 52727679 52727819 -68529711 + B1_Mus1 SINE Alu 5 147 -1 4 987 701 304 46 0 chr12 52729402 52729596 -68527934 - ID_B1 SINE B4 0 224 22 4 987 23 33 0 0 chr12 52730320 52730350 -68527180 + AT_rich Low_complexity Low_complexity 1 30 0 4 987 23 33 0 0 chr12 52732513 52732543 -68524987 + AT_rich Low_complexity Low_complexity 1 30 0 4 987 602 248 0 30 chr12 52732547 52732680 -68524850 - B1_Mur2 SINE Alu -2 147 19 4 987 279 0 0 0 chr12 52732871 52732902 -68524628 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 987 558 0 0 0 chr12 52732902 52732963 -68524567 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 987 231 114 0 0 chr12 52735909 52735944 -68521586 + (A)n Simple_repeat Simple_repeat 1 35 0 4 987 202 195 0 0 chr12 52736505 52736546 -68520984 + CT-rich Low_complexity Low_complexity 5 45 0 4 987 291 164 0 0 chr12 52736549 52736610 -68520920 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 987 234 294 15 0 chr12 52737097 52737165 -68520365 - ID2 SINE ID -9 74 6 4 987 531 316 50 0 chr12 52737358 52737497 -68520033 + B1F1 SINE Alu 1 146 -3 4 987 348 294 87 10 chr12 52737573 52737676 -68519854 + B1F SINE Alu 7 117 0 4 987 180 0 0 0 chr12 52738301 52738321 -68519209 + (A)n Simple_repeat Simple_repeat 1 20 0 4 987 183 42 0 0 chr12 52738627 52738651 -68518879 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 987 337 283 37 9 chr12 52738674 52738781 -68518749 - PB1D10 SINE Alu -7 110 1 4 987 329 144 396 11 chr12 52739006 52739097 -68518433 - B2_Mm2 SINE B2 -23 172 47 4 987 1103 113 65 0 chr12 52739182 52739350 -68518180 - B2_Mm1t SINE B2 -14 179 1 4 987 485 333 67 11 chr12 52739807 52739986 -68517544 - ID_B1 SINE B4 -34 190 2 4 987 698 215 0 27 chr12 52740325 52740473 -68517057 - B1_Mus1 SINE Alu -2 146 3 4 987 26 0 0 0 chr12 52740484 52740510 -68517020 + AT_rich Low_complexity Low_complexity 1 26 0 4 987 23 0 0 0 chr12 52740802 52740825 -68516705 + AT_rich Low_complexity Low_complexity 1 23 0 4 987 183 42 0 0 chr12 52740884 52740908 -68516622 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 987 1107 62 0 7 chr12 52740908 52741053 -68516477 - B1_Mus2 SINE Alu -3 144 1 4 987 1492 48 21 0 chr12 52741068 52741256 -68516274 - B2_Mm1a SINE B2 0 193 2 4 987 224 382 18 26 chr12 52741511 52741624 -68515906 + PB1D10 SINE Alu 5 116 -1 5 987 269 222 55 110 chr12 52741989 52742080 -68515450 - B1F1 SINE Alu -17 132 47 5 987 240 100 0 24 chr12 52742050 52742091 -68515439 + B1_Mur4 SINE Alu 110 149 -1 5 987 697 176 76 0 chr12 52742308 52742439 -68515091 - B1_Mur4 SINE Alu -9 141 1 5 987 468 183 0 0 chr12 52742683 52742754 -68514776 + BC1_Mm scRNA scRNA 1 71 -81 5 987 207 216 39 0 chr12 52742757 52742808 -68514722 + GA-rich Low_complexity Low_complexity 3 55 0 5 987 456 264 35 35 chr12 52743014 52743159 -68514371 - B1_Mur1 SINE Alu -1 148 4 5 987 715 254 43 11 chr12 52743165 52743352 -68514178 - B3 SINE B2 0 216 24 5 987 25 0 0 0 chr12 52744461 52744486 -68513044 + AT_rich Low_complexity Low_complexity 1 25 0 5 987 22 0 0 0 chr12 52745097 52745119 -68512411 + AT_rich Low_complexity Low_complexity 1 22 0 5 987 1252 115 10 25 chr12 52746491 52746688 -68510842 - B2_Mm2 SINE B2 -1 194 1 5 987 213 154 0 0 chr12 52747424 52747463 -68510067 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 987 487 279 68 25 chr12 52747951 52748113 -68509417 - B3 SINE B2 0 198 30 5 987 335 227 240 16 chr12 52748184 52748305 -68509225 - B1_Mur4 SINE Alu 0 150 3 5 987 513 290 68 20 chr12 52749593 52749741 -68507789 + RSINE1 SINE B4 11 165 0 5 987 427 289 130 15 chr12 52749909 52750109 -68507421 - ID_B1 SINE B4 0 224 2 5 987 23 0 0 0 chr12 52750284 52750307 -68507223 + AT_rich Low_complexity Low_complexity 1 23 0 5 987 2792 60 52 18 chr12 52750470 52750857 -68506673 + MTB LTR MaLR 1 400 0 5 987 201 74 0 0 chr12 52750869 52750896 -68506634 + (A)n Simple_repeat Simple_repeat 1 27 0 5 987 268 365 0 0 chr12 52751310 52751384 -68506146 - ID4 SINE ID -7 76 3 5 987 405 278 11 0 chr12 52751445 52751535 -68505995 - ID_B1 SINE B4 0 224 134 5 987 297 317 65 28 chr12 52751535 52751552 -68505978 - B1F SINE Alu 0 149 39 5 987 526 279 15 91 chr12 52751719 52751916 -68505614 + B3A SINE B2 1 182 -16 5 987 427 233 25 41 chr12 52752212 52752333 -68505197 + PB1D9 SINE Alu 2 120 0 5 987 2827 56 3 3 chr12 52752813 52753170 -68504360 - L1_Mus1 LINE L1 0 6567 6211 5 987 1533 57 0 15 chr12 52753336 52753531 -68503999 + B2_Mm1a SINE B2 2 193 0 5 987 440 271 18 27 chr12 52753997 52754107 -68503423 + B3 SINE B2 101 209 -7 5 987 415 170 380 0 chr12 52754128 52754228 -68503302 + B1_Mus2 SINE Alu 1 138 -9 5 987 213 39 0 0 chr12 52754232 52754258 -68503272 + (AGGGGG)n Simple_repeat Simple_repeat 5 30 0 5 987 882 168 0 0 chr12 52754262 52754423 -68503107 + GA-rich Low_complexity Low_complexity 3 163 0 5 987 1351 70 38 0 chr12 52754811 52754997 -68502533 + B2_Mm2 SINE B2 2 194 -1 5 987 208 246 0 0 chr12 52754998 52755055 -68502475 + A-rich Low_complexity Low_complexity 1 57 0 5 987 1680 16 0 0 chr12 52755123 52755310 -68502220 - B2_Mm1a SINE B2 -6 187 1 5 987 420 228 258 40 chr12 52755331 52755482 -68502048 + B3A SINE B2 2 185 -13 5 987 603 286 24 52 chr12 52755702 52755912 -68501618 - B3 SINE B2 -11 205 2 5 987 278 265 0 48 chr12 52755995 52756098 -68501432 + GA-rich Low_complexity Low_complexity 4 101 0 5 987 426 291 46 26 chr12 52756114 52756266 -68501264 + RSINE1 SINE B4 11 165 0 5 987 22 35 0 0 chr12 52756530 52756559 -68500971 + AT_rich Low_complexity Low_complexity 1 29 0 5 987 24 0 0 0 chr12 52756757 52756781 -68500749 + AT_rich Low_complexity Low_complexity 1 24 0 5 987 228 35 0 0 chr12 52756817 52756846 -68500684 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 987 266 250 71 48 chr12 52757390 52757474 -68500056 - PB1D10 SINE Alu 0 117 32 5 987 278 206 104 42 chr12 52758596 52758692 -68498838 - L1M5 LINE L1 -387 5853 5752 5 987 342 307 0 47 chr12 52758702 52758808 -68498722 + RMER12 LTR ERVK 750 850 -472 5 987 288 200 0 0 chr12 52758808 52758873 -68498657 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 987 772 181 7 15 chr12 52759167 52759302 -68498228 - B1_Mus2 SINE Alu -1 146 13 5 987 439 243 56 130 chr12 52759171 52759308 -68498222 - B4 SINE B4 -72 220 97 5 987 1374 71 39 0 chr12 52759308 52759490 -68498040 - B2_Mm2 SINE B2 -6 189 1 5 987 439 243 56 130 chr12 52759490 52759513 -68498017 - B4 SINE B4 -196 96 72 5 987 396 166 90 19 chr12 52760219 52760335 -68497195 - B1_Mur3 SINE Alu 0 149 28 5 987 237 356 22 44 chr12 52760343 52760434 -68497096 - ID_B1 SINE B4 -56 168 80 5 987 24 32 0 0 chr12 52760747 52760778 -68496752 + AT_rich Low_complexity Low_complexity 1 31 0 5 987 404 299 60 26 chr12 52760821 52760972 -68496558 + ID_B1 SINE B4 60 215 -9 5 987 221 333 39 29 chr12 52761323 52761425 -68496105 + RSINE1 SINE B4 32 134 -31 5 987 582 180 81 0 chr12 52761472 52761583 -68495947 - B1_Mur1 SINE Alu -25 124 5 5 987 752 246 37 50 chr12 52761787 52762005 -68495525 + B3A SINE B2 2 216 0 5 987 21 0 0 0 chr12 52763435 52763456 -68494074 + AT_rich Low_complexity Low_complexity 1 21 0 5 987 363 198 105 38 chr12 52763458 52763563 -68493967 - PB1D9 SINE Alu -8 112 1 5 987 380 59 0 76 chr12 52763695 52763787 -68493743 + (GGA)n Simple_repeat Simple_repeat 2 86 0 5 987 698 252 0 0 chr12 52763811 52763942 -68493588 + B1_Mur2 SINE Alu 6 136 -13 5 987 338 217 624 0 chr12 52763936 52764053 -68493477 - B3 SINE B2 -24 192 3 5 987 342 308 0 0 chr12 52764057 52764148 -68493382 - B4 SINE B4 -200 92 2 5 987 383 303 0 11 chr12 52764390 52764480 -68493050 + ID_B1 SINE B4 81 169 -55 5 987 368 309 37 9 chr12 52764391 52764499 -68493031 + PB1D10 SINE Alu 1 111 -6 5 987 300 53 0 0 chr12 52764744 52764782 -68492748 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 987 1623 221 53 63 chr12 52764867 52765282 -68492248 + MTD LTR MaLR 1 411 -8 5 987 778 208 88 84 chr12 52765286 52765549 -68491981 + MTD-int LTR MaLR 1 264 -994 5 987 465 224 65 136 chr12 52765548 52765703 -68491827 + B1_Mur3 SINE Alu 6 149 0 5 987 567 231 36 113 chr12 52765764 52765878 -68491652 + B3A SINE B2 19 132 -66 5 987 1093 102 0 0 chr12 52765878 52766025 -68491505 + B1_Mus2 SINE Alu 1 147 0 5 987 567 231 36 113 chr12 52766025 52766105 -68491425 + B3A SINE B2 133 198 0 5 987 448 81 450 10 chr12 52766117 52766217 -68491313 + B1_Mus1 SINE Alu 5 148 0 5 987 423 216 23 0 chr12 52766236 52766324 -68491206 + MTD-int LTR MaLR 385 474 -784 5 987 355 286 0 20 chr12 52766366 52766466 -68491064 + B4A SINE B4 175 272 -20 5 987 1195 115 39 0 chr12 52766554 52766736 -68490794 - B2_Mm2 SINE B2 -5 190 2 5 987 328 231 220 20 chr12 52766752 52766902 -68490628 + L1M3 LINE L1 4394 4573 -1567 5 987 282 125 143 65 chr12 52766941 52767018 -68490512 - B1_Mur1 SINE Alu -5 144 62 5 987 854 131 0 42 chr12 52767088 52767231 -68490299 - B1_Mur3 SINE Alu -12 137 1 5 987 225 310 115 0 chr12 52767240 52767327 -68490203 + B1F1 SINE Alu 48 144 -5 5 987 216 351 37 61 chr12 52767390 52767472 -68490058 - ID2 SINE ID 0 83 4 5 987 402 172 202 0 chr12 52767563 52767662 -68489868 + PB1D9 SINE Alu 1 119 -1 5 987 548 260 106 47 chr12 52768072 52768347 -68489183 + B4A SINE B4 2 292 0 5 987 280 263 66 0 chr12 52768385 52768461 -68489069 + 4.5SRNA scRNA scRNA 3 83 -11 5 987 261 0 0 0 chr12 52768461 52768490 -68489040 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 987 417 20 0 0 chr12 52768490 52768539 -68488991 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 987 984 122 14 0 chr12 52768982 52769121 -68488409 - B1_Mur4 SINE Alu -9 141 1 5 987 281 274 83 32 chr12 52769191 52769325 -68488205 + B3A SINE B2 13 170 -46 5 987 251 140 31 123 chr12 52769416 52769481 -68488049 - PB1D9 SINE Alu -1 119 61 5 987 337 308 11 11 chr12 52769511 52769603 -68487927 + PB1D10 SINE Alu 24 115 -2 5 987 211 286 86 93 chr12 52770147 52770309 -68487221 - MIRb SINE MIR -71 197 37 5 987 442 349 7 20 chr12 52770488 52770637 -68486893 - RSINE1 SINE B4 -18 147 1 5 987 347 296 92 9 chr12 52770843 52770952 -68486578 - PB1D7 SINE Alu -2 118 1 5 987 663 252 18 70 chr12 52770952 52771040 -68486490 - ID SINE ID -141 83 5 5 987 1099 83 7 0 chr12 52771112 52771257 -68486273 + B1_Mus1 SINE Alu 2 147 -1 5 987 252 143 0 0 chr12 52771268 52771310 -68486220 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 987 431 227 276 13 chr12 52771349 52771501 -68486029 - B2_Mm2 SINE B2 -3 192 1 5 987 476 250 125 0 chr12 52771868 52771980 -68485550 + B1F1 SINE Alu 8 133 -16 5 987 1101 177 233 3 chr12 52772155 52772456 -68485074 - ORR1D1 LTR MaLR 0 374 5 5 987 1564 258 102 84 chr12 52772478 52773074 -68484456 + RLTR17 LTR ERVK 1 607 -85 5 987 207 0 0 0 chr12 52773090 52773113 -68484417 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 5 987 630 165 0 35 chr12 52773335 52773448 -68484082 + B1_Mus2 SINE Alu 39 147 0 5 987 251 236 65 145 chr12 52773337 52773461 -68484069 + B4 SINE B4 126 239 -53 5 987 353 173 56 90 chr12 52774027 52774116 -68483414 + ID_B1 SINE B4 99 184 -40 5 987 267 281 67 19 chr12 52774116 52774132 -68483398 + B1_Mur3 SINE Alu 18 127 -22 5 987 4059 185 121 9 chr12 52774171 52774982 -68482548 - RMER19B LTR ERVK 0 902 1 5 987 204 191 42 21 chr12 52774984 52775032 -68482498 + GA-rich Low_complexity Low_complexity 5 53 0 6 987 545 265 130 22 chr12 52775347 52775532 -68481998 + B3 SINE B2 6 210 -6 6 987 230 292 33 11 chr12 52775548 52775638 -68481892 - L1M3 LINE L1 -594 5577 5486 6 987 261 290 0 55 chr12 52775644 52775717 -68481813 - ID4 SINE ID -4 79 11 6 987 248 299 90 36 chr12 52775728 52775839 -68481691 - PB1D10 SINE Alu 0 117 1 6 987 232 360 26 35 chr12 52775839 52775879 -68481651 - ID_B1 SINE B4 -134 90 52 6 987 210 354 126 28 chr12 52775881 52776128 -68481402 + L2c LINE L2 2924 3194 -193 6 987 652 286 24 42 chr12 52776527 52776695 -68480835 - B3A SINE B2 -26 172 8 6 987 682 248 73 0 chr12 52776732 52776869 -68480661 - B3 SINE B2 -2 214 68 6 987 1152 82 0 0 chr12 52776945 52777092 -68480438 + B1_Mus2 SINE Alu 1 147 0 6 987 715 197 24 0 chr12 52777125 52777252 -68480278 + B3 SINE B2 1 130 -86 6 987 24 0 0 0 chr12 52777284 52777308 -68480222 + AT_rich Low_complexity Low_complexity 1 24 0 6 987 512 241 126 0 chr12 52777328 52777527 -68480003 + L1MB3 LINE L1 5599 5822 -349 6 987 312 278 102 4 chr12 52777532 52777623 -68479907 + PB1D10 SINE Alu 1 99 -21 6 987 343 259 261 98 chr12 52777626 52777905 -68479625 + L1MB3 LINE L1 5817 6140 -31 6 987 295 232 14 0 chr12 52777936 52778005 -68479525 + PB1D10 SINE Alu 48 117 0 6 987 428 262 103 0 chr12 52778785 52778892 -68478638 + RSINE1 SINE B4 3 120 -45 6 987 224 59 29 0 chr12 52778939 52778973 -68478557 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 6 987 276 192 48 48 chr12 52779084 52779188 -68478342 + L1M4 LINE L1 942 1045 -5497 6 987 1244 152 49 4 chr12 52779401 52779626 -68477904 - MTD LTR MaLR 0 419 185 6 987 601 145 86 0 chr12 52779660 52779777 -68477753 - RMER4A LTR ERVK -4 462 336 6 987 228 333 57 57 chr12 52779877 52779982 -68477548 + RSINE1 SINE B4 59 163 -2 6 987 712 274 19 14 chr12 52779982 52780197 -68477333 + ID_B1 SINE B4 9 224 0 6 987 309 275 148 46 chr12 52780261 52780317 -68477213 + L1M4 LINE L1 1422 1469 -5073 6 987 1672 36 0 0 chr12 52780317 52780509 -68477021 + B2_Mm1t SINE B2 2 193 0 6 987 309 275 149 47 chr12 52780509 52780725 -68476805 + L1M4 LINE L1 1462 1713 -4933 6 987 1198 61 0 0 chr12 52780725 52780872 -68476658 + B1_Mus1 SINE Alu 2 148 0 6 987 248 276 163 73 chr12 52780872 52780927 -68476603 + L1M4 LINE L1 1714 1763 -4883 6 987 1340 70 48 11 chr12 52780988 52781175 -68476355 + B2_Mm2 SINE B2 1 194 -1 6 987 387 0 0 0 chr12 52781297 52781340 -68476190 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 987 504 131 24 0 chr12 52781405 52781489 -68476041 + B1_Mm SINE Alu 62 147 0 6 987 265 326 96 0 chr12 52781537 52781672 -68475858 + B1F1 SINE Alu 1 148 -1 6 987 284 176 0 0 chr12 52781788 52781839 -68475691 - ID SINE ID -166 58 8 6 987 261 274 0 0 chr12 52781922 52781984 -68475546 - ID SINE ID -162 62 1 6 987 1364 91 0 11 chr12 52782389 52782578 -68474952 + B2_Mm2 SINE B2 1 187 -8 6 987 1614 163 67 112 chr12 52782746 52783147 -68474383 + ORR1C2 LTR MaLR 1 383 -1 6 987 367 237 98 56 chr12 52783252 52783395 -68474135 + B1F1 SINE Alu 1 149 0 6 987 1078 215 89 46 chr12 52783437 52783764 -68473766 + ORR1D1 LTR MaLR 34 374 0 6 987 1099 36 0 0 chr12 52783804 52783944 -68473586 + B2_Mm2 SINE B2 2 141 -54 6 987 268 284 40 0 chr12 52783953 52784027 -68473503 + B1F SINE Alu 73 149 0 6 987 373 252 149 137 chr12 52784680 52784841 -68472689 - RSINE1 SINE B4 0 165 3 6 987 2868 74 265 13 chr12 52785011 52785475 -68472055 + MT2B2 LTR ERVL 4 584 0 6 987 180 111 0 0 chr12 52785513 52785540 -68471990 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 987 594 226 22 14 chr12 52785547 52785686 -68471844 - B1F SINE Alu -1 148 9 6 987 624 263 131 0 chr12 52785825 52786000 -68471530 + ID_B1 SINE B4 11 208 -16 6 987 1599 32 27 0 chr12 52786302 52786489 -68471041 + B2_Mm1a SINE B2 2 193 0 6 987 753 49 0 29 chr12 52786504 52786609 -68470921 + B1_Mus2 SINE Alu 46 147 0 6 987 318 293 102 87 chr12 52786671 52786798 -68470732 + ID_B1 SINE B4 2 130 -94 6 987 252 217 202 12 chr12 52786763 52786847 -68470683 + PB1D7 SINE Alu 15 114 -6 6 987 1080 75 0 45 chr12 52787162 52787316 -68470214 + B1_Mus1 SINE Alu 2 148 0 6 987 227 224 84 56 chr12 52787715 52787786 -68469744 + RSINE1 SINE B4 12 84 -81 6 987 415 219 19 19 chr12 52788008 52788115 -68469415 + B1F1 SINE Alu 43 149 0 6 987 352 200 34 34 chr12 52788181 52788269 -68469261 - PB1D9 SINE Alu -10 110 23 6 987 521 248 106 0 chr12 52788496 52788637 -68468893 + RSINE1 SINE B4 9 164 -1 6 987 224 281 93 10 chr12 52788641 52788738 -68468792 + ID_B1 SINE B4 39 143 -81 6 987 324 205 151 11 chr12 52788685 52788786 -68468744 + PB1 SINE Alu 26 214 -97 6 987 1214 97 11 6 chr12 52788798 52788975 -68468555 + B2_Mm1t SINE B2 2 179 -14 6 987 1257 54 77 6 chr12 52789037 52789205 -68468325 + B2_Mm2 SINE B2 2 181 -14 6 987 438 212 176 29 chr12 52789660 52789830 -68467700 + B3A SINE B2 4 198 0 6 987 1242 55 0 0 chr12 52789985 52790131 -68467399 + B1_Mus2 SINE Alu 2 147 0 6 987 205 118 39 0 chr12 52790132 52790183 -68467347 + A-rich Low_complexity Low_complexity 2 54 0 6 987 468 229 67 30 chr12 52790641 52790776 -68466754 + B1_Mur1 SINE Alu 2 141 -8 6 987 607 178 94 22 chr12 52790788 52790926 -68466604 + B1_Mur4 SINE Alu 3 150 0 6 987 494 268 65 0 chr12 52791027 52791165 -68466365 - B1_Mur2 SINE Alu 0 149 3 6 987 203 174 0 61 chr12 52792330 52792379 -68465151 + (CCCCAG)n Simple_repeat Simple_repeat 6 51 0 6 987 30 69 0 0 chr12 52792524 52792582 -68464948 + GC_rich Low_complexity Low_complexity 1 58 0 6 987 23 54 0 0 chr12 52792756 52792793 -68464737 + GC_rich Low_complexity Low_complexity 1 37 0 6 987 212 31 0 59 chr12 52792928 52792962 -68464568 + (GGA)n Simple_repeat Simple_repeat 1 32 0 6 987 324 0 0 0 chr12 52793595 52793631 -68463899 + (T)n Simple_repeat Simple_repeat 1 36 0 6 987 1152 41 14 0 chr12 52793916 52794061 -68463469 - B1_Mm SINE Alu 0 147 1 6 987 692 144 40 61 chr12 52794090 52794238 -68463292 + B1_Mus2 SINE Alu 3 147 0 6 987 1088 118 65 0 chr12 52794553 52794723 -68462807 + B2_Mm2 SINE B2 1 181 -14 6 987 563 152 18 54 chr12 52795023 52795134 -68462396 + B1_Mur3 SINE Alu 43 149 0 6 987 252 277 38 0 chr12 52795449 52795527 -68462003 - B1F2 SINE Alu -68 81 1 6 987 377 306 37 0 chr12 52795565 52795673 -68461857 + B1F SINE Alu 25 136 -13 6 987 1560 57 10 5 chr12 52796410 52796604 -68460926 + B2_Mm2 SINE B2 1 195 0 6 987 2195 127 9 0 chr12 52796749 52797072 -68460458 - ORR1A3 LTR MaLR 0 326 1 6 987 1509 106 64 34 chr12 52797558 52797823 -68459707 + Lx LINE L1 6365 6637 -17 6 987 331 205 0 43 chr12 52798159 52798251 -68459279 - BC1_Mm scRNA scRNA -37 115 28 6 987 435 269 44 44 chr12 52798346 52798482 -68459048 - RSINE1 SINE B4 -27 138 3 6 987 275 226 38 123 chr12 52798486 52798592 -68458938 - PB1 SINE Alu -2 125 29 6 987 246 167 148 0 chr12 52798818 52798872 -68458658 - tRNA-Ala-GCY_ tRNA tRNA -11 64 3 6 987 1496 63 16 0 chr12 52799208 52799399 -68458131 - B2_Mm2 SINE B2 0 195 2 6 987 525 328 10 30 chr12 52799474 52799672 -68457858 + B3A SINE B2 1 194 -4 6 987 673 209 7 15 chr12 52799943 52800079 -68457451 + B1_Mur4 SINE Alu 1 135 -15 6 987 1554 184 24 45 chr12 52800079 52800414 -68457116 - ORR1A4 LTR MaLR -1 328 1 6 987 335 183 183 0 chr12 52800468 52800561 -68456969 + PB1D9 SINE Alu 10 119 -1 6 987 201 74 0 0 chr12 52801528 52801555 -68455975 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 987 601 122 0 20 chr12 52801560 52801660 -68455870 + B1_Mur2 SINE Alu 2 99 -50 6 987 2580 120 58 9 chr12 52801672 52802101 -68455429 + Lx2 LINE L1 5917 6366 -631 6 987 1038 150 129 10 chr12 52802119 52802321 -68455209 + URR1A DNA MER1_type 1 226 0 6 987 410 267 215 5 chr12 52802437 52802679 -68454851 - MTEa LTR MaLR -68 311 18 6 987 1003 176 6 31 chr12 52802888 52803160 -68454370 + ORR1D1 LTR MaLR 3 329 -55 6 987 1149 75 14 0 chr12 52803160 52803306 -68454224 + B1_Mus1 SINE Alu 1 148 0 6 987 633 179 7 65 chr12 52803306 52803358 -68454172 + ORR1D1 LTR MaLR 330 380 -4 6 987 368 245 72 2 chr12 52803358 52803482 -68454048 - L1MB8 LINE L1 -190 5984 5850 6 987 463 209 0 19 chr12 52803563 52803670 -68453860 - BC1_Mm scRNA scRNA -47 105 1 6 987 1133 107 18 0 chr12 52803729 52803897 -68453633 - B2_Mm2 SINE B2 -23 172 2 6 987 1173 74 0 0 chr12 52803918 52804066 -68453464 - B1_Mus1 SINE Alu 0 148 1 6 987 573 259 0 39 chr12 52804120 52804273 -68453257 - B1F SINE Alu -2 147 1 6 987 234 214 379 0 chr12 52804983 52805086 -68452444 - B1F1 SINE Alu -6 143 2 6 987 267 303 0 0 chr12 52805175 52805251 -68452279 - B1_Mur1 SINE Alu -2 147 72 6 987 309 89 0 0 chr12 52805254 52805299 -68452231 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 6 987 458 235 95 7 chr12 52805299 52805436 -68452094 - B1F SINE Alu 0 149 1 6 987 790 218 71 5 chr12 52806097 52806309 -68451221 + B4A SINE B4 1 226 -66 6 987 1077 82 7 7 chr12 52806329 52806476 -68451054 + B1_Mm SINE Alu 1 147 0 6 987 326 227 13 39 chr12 52806631 52806709 -68450821 + B4A SINE B4 217 292 0 6 987 1222 28 14 0 chr12 52807352 52807497 -68450033 - B1_Mm SINE Alu 0 147 1 7 987 35 0 0 0 chr12 52807598 52807633 -68449897 + AT_rich Low_complexity Low_complexity 1 35 0 7 987 850 154 21 0 chr12 52807676 52807819 -68449711 - B1_Mus2 SINE Alu -1 146 1 7 987 514 263 25 0 chr12 52807835 52807953 -68449577 - RSINE1 SINE B4 -37 128 8 7 987 431 212 364 0 chr12 52808003 52808154 -68449376 + B3 SINE B2 5 210 -6 7 987 841 192 0 0 chr12 52808205 52808351 -68449179 - B1_Mur3 SINE Alu -2 147 2 7 987 697 186 8 8 chr12 52808429 52808559 -68448971 + B3 SINE B2 1 130 -86 7 987 207 0 0 0 chr12 52808670 52808693 -68448837 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 987 486 188 29 19 chr12 52809007 52809110 -68448420 - PB1D10 SINE Alu -2 115 12 7 987 23 54 0 0 chr12 52809120 52809157 -68448373 + AT_rich Low_complexity Low_complexity 1 37 0 7 987 1162 62 0 0 chr12 52809157 52809301 -68448229 + B1_Mm SINE Alu 1 144 -3 7 987 222 37 0 0 chr12 52809301 52809328 -68448202 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 7 987 705 174 0 74 chr12 52809360 52809509 -68448021 + B1_Mur4 SINE Alu 2 139 -11 7 987 185 35 69 0 chr12 52809509 52809538 -68447992 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 987 1392 58 0 28 chr12 52809546 52809725 -68447805 + B2_Mm2 SINE B2 3 176 -19 7 987 685 185 8 0 chr12 52809764 52809894 -68447636 - ID_B1 SINE B4 -8 216 86 7 987 325 295 0 0 chr12 52810243 52810321 -68447209 + ID4_ SINE ID 4 81 -2 7 987 22 0 0 0 chr12 52810597 52810619 -68446911 + AT_rich Low_complexity Low_complexity 1 22 0 7 987 525 115 0 0 chr12 52810700 52810787 -68446743 + (TC)n Simple_repeat Simple_repeat 1 87 0 7 987 378 0 0 0 chr12 52810787 52810829 -68446701 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 987 810 211 58 31 chr12 52811646 52811780 -68445750 - B3 SINE B2 -18 198 69 7 987 2512 80 6 0 chr12 52811780 52812105 -68445425 + ORR1A2 LTR MaLR 1 327 0 7 987 810 211 58 31 chr12 52812105 52812161 -68445369 - B3 SINE B2 -148 68 3 7 987 1381 71 32 21 chr12 52812173 52812361 -68445169 - B2_Mm2 SINE B2 -4 191 2 7 987 501 267 7 69 chr12 52812454 52812599 -68444931 - RSINE1 SINE B4 -25 140 5 7 987 627 81 0 0 chr12 52812673 52812759 -68444771 + (TCC)n Simple_repeat Simple_repeat 2 87 0 7 987 263 130 22 0 chr12 52812851 52812897 -68444633 + MTD LTR MaLR 336 382 -37 7 987 218 179 53 18 chr12 52813145 52813202 -68444328 - B1_Mur1 SINE Alu 0 149 91 7 987 275 253 3 2 chr12 52813297 52813347 -68444183 + B1F SINE Alu 4 57 -92 7 987 767 161 282 12 chr12 52813347 52813517 -68444013 + B3 SINE B2 1 216 0 7 987 338 239 26 10 chr12 52813517 52813607 -68443923 + PB1D10 SINE Alu 42 143 -6 7 987 195 42 0 0 chr12 52813749 52813773 -68443757 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 987 383 216 68 10 chr12 52813786 52813889 -68443641 - PB1D7 SINE Alu -10 110 2 7 987 198 103 0 0 chr12 52814171 52814200 -68443330 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 987 718 231 80 5 chr12 52814202 52814389 -68443141 - B3 SINE B2 -13 203 3 7 987 630 268 50 0 chr12 52814575 52814754 -68442776 - MTEa LTR MaLR 0 379 192 7 987 344 279 64 24 chr12 52814766 52814891 -68442639 - MTEa LTR MaLR -249 130 1 7 987 192 97 0 0 chr12 52815065 52815096 -68442434 + (T)n Simple_repeat Simple_repeat 1 31 0 7 987 1631 31 0 15 chr12 52815097 52815292 -68442238 - B2_Mm1t SINE B2 0 193 2 7 987 963 98 0 7 chr12 52815345 52815489 -68442041 + B1_Mus1 SINE Alu 6 148 0 7 987 239 212 296 34 chr12 52815538 52815626 -68441904 - B3A SINE B2 -84 114 4 7 987 297 0 0 0 chr12 52816634 52816667 -68440863 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 7 987 1066 78 0 48 chr12 52816667 52816814 -68440716 - B1_Mus1 SINE Alu -8 140 1 7 987 441 0 0 0 chr12 52816835 52816884 -68440646 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 7 987 1203 45 0 0 chr12 52816884 52817039 -68440491 - B2_Mm2 SINE B2 -40 155 1 7 987 22 35 0 0 chr12 52817049 52817078 -68440452 + AT_rich Low_complexity Low_complexity 1 29 0 7 987 816 260 17 0 chr12 52817100 52817277 -68440253 - B3A SINE B2 -18 180 1 7 987 207 0 0 0 chr12 52817532 52817555 -68439975 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 987 489 88 0 0 chr12 52817555 52817635 -68439895 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 987 4500 83 101 16 chr12 52818608 52819304 -68438226 - RMER6A LTR ERVK 0 756 2 7 987 21 0 0 0 chr12 52819395 52819416 -68438114 + AT_rich Low_complexity Low_complexity 1 21 0 7 987 251 226 30 61 chr12 52819466 52819532 -68437998 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 7 987 1789 186 82 12 chr12 52820197 52820599 -68436931 - BGLII_B LTR ERVK -10 431 2 7 987 279 132 29 14 chr12 52821148 52821217 -68436313 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 7 987 604 217 42 7 chr12 52821982 52821994 -68435536 - B1_Mur1 SINE Alu 0 149 138 7 123 324 0 0 0 chr12 52821994 52822030 -68435500 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 7 988 604 217 42 7 chr12 52822030 52822161 -68435369 - B1_Mur1 SINE Alu -12 137 1 7 988 740 254 0 0 chr12 52822184 52822326 -68435204 - RSINE1 SINE B4 -21 144 3 7 988 307 263 73 48 chr12 52822355 52822479 -68435051 - PB1 SINE Alu 0 127 1 7 988 273 362 46 26 chr12 52822598 52822751 -68434779 + B4A SINE B4 15 170 -122 7 988 321 174 0 0 chr12 52822941 52823010 -68434520 + (CGGGG)n Simple_repeat Simple_repeat 5 73 0 7 988 327 49 0 0 chr12 52823332 52823373 -68434157 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 7 988 1110 52 148 0 chr12 52823480 52823635 -68433895 - B2_Mm1t SINE B2 -13 180 3 7 988 496 214 24 97 chr12 52823702 52823826 -68433704 - ID_B1 SINE B4 -107 117 3 7 988 1458 176 147 43 chr12 52824213 52824446 -68433084 - MTD LTR MaLR -13 406 163 7 988 201 74 0 0 chr12 52824446 52824473 -68433057 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 988 1458 176 147 43 chr12 52824473 52824607 -68432923 - MTD LTR MaLR -257 162 1 7 988 734 226 0 7 chr12 52824746 52824893 -68432637 + B1_Mus1 SINE Alu 1 146 -2 7 988 459 255 29 10 chr12 52824941 52825044 -68432486 + ID_B1 SINE B4 86 190 -34 7 988 914 208 22 72 chr12 52825101 52825324 -68432206 + B3 SINE B2 5 216 0 7 988 1082 267 94 32 chr12 52825403 52825905 -68431625 - L1MB8 LINE L1 -4 6174 5643 7 988 840 170 7 0 chr12 52825905 52826046 -68431484 + B1_Mus2 SINE Alu 6 147 0 7 988 255 285 75 48 chr12 52826094 52826282 -68431248 - L1M4 LINE L1 -488 5685 5493 7 988 867 121 0 0 chr12 52826282 52826431 -68431099 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 7 988 587 226 38 0 chr12 52826444 52826577 -68430953 - B1_Mur1 SINE Alu -6 143 6 7 988 249 143 22 0 chr12 52826611 52826660 -68430870 - L1M4 LINE L1 -947 5356 5307 7 988 2032 102 11 90 chr12 52826694 52827051 -68430479 + ORR1A4 LTR MaLR 1 329 0 7 988 317 261 52 9 chr12 52827102 52827218 -68430312 - L1M4 LINE L1 -1085 5061 4941 7 988 266 271 14 14 chr12 52827241 52827312 -68430218 - PB1D10 SINE Alu -29 88 18 7 988 250 337 12 24 chr12 52827254 52827339 -68430191 - ID_B1 SINE B4 -67 157 74 7 988 258 287 160 24 chr12 52827437 52827562 -68429968 + ID_B1 SINE B4 82 223 -1 7 988 293 224 106 0 chr12 52827594 52827679 -68429851 - L1M4 LINE L1 -1316 4830 4737 7 988 1469 198 34 21 chr12 52827766 52828020 -68429510 - ORR1A4 LTR MaLR 0 329 70 7 988 414 0 0 0 chr12 52828020 52828066 -68429464 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 988 1469 198 34 21 chr12 52828066 52828136 -68429394 - ORR1A4 LTR MaLR -260 69 2 7 988 337 278 104 15 chr12 52828144 52828279 -68429251 - ID_B1 SINE B4 -70 154 8 7 988 1683 47 47 0 chr12 52828554 52828790 -68428740 + MT2C_Mm LTR ERVL 3 249 -226 7 988 406 55 0 0 chr12 52828778 52828833 -68428697 - ORR1A0 LTR MaLR -291 55 1 7 988 552 246 76 0 chr12 52828950 52829121 -68428409 + MER5A DNA MER1_type 1 184 -5 7 988 1486 60 5 0 chr12 52829131 52829315 -68428215 - B2_Mm1a SINE B2 -7 186 2 7 988 327 327 78 86 chr12 52830853 52831097 -68426433 - MER2 DNA MER2_type -20 325 84 7 988 459 196 68 43 chr12 52831541 52831658 -68425872 - PB1D7 SINE Alu 0 120 1 7 988 1028 139 200 0 chr12 52832151 52832331 -68425199 + B3 SINE B2 1 216 0 7 988 225 182 45 0 chr12 52832332 52832398 -68425132 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 988 285 253 25 25 chr12 52833137 52833218 -68424312 + ID4_ SINE ID 2 82 -1 7 988 504 304 27 21 chr12 52833321 52833492 -68424038 + B3A SINE B2 4 175 -23 7 988 719 207 7 7 chr12 52833492 52833633 -68423897 + B1_Mur1 SINE Alu 5 145 -4 7 988 504 285 27 72 chr12 52833633 52833684 -68423846 + B3A SINE B2 173 216 0 7 988 1146 98 0 0 chr12 52833767 52833910 -68423620 - B1_Mus2 SINE Alu 0 147 5 7 988 22 35 0 0 chr12 52833971 52834000 -68423530 + AT_rich Low_complexity Low_complexity 1 29 0 7 988 198 223 0 47 chr12 52834013 52834140 -68423390 + (TATG)n Simple_repeat Simple_repeat 2 122 0 7 988 1216 147 30 20 chr12 52834163 52834364 -68423166 - B3 SINE B2 -13 203 1 7 988 381 232 88 29 chr12 52834936 52835038 -68422492 - PB1D9 SINE Alu -3 117 10 7 988 614 240 230 17 chr12 52836118 52836296 -68421234 - B3 SINE B2 0 216 1 7 988 265 265 78 10 chr12 52836446 52836549 -68420981 + B1F2 SINE Alu 40 149 0 7 988 829 213 31 44 chr12 52837439 52837665 -68419865 - ID_B1 SINE B4 0 224 2 7 988 1199 62 0 7 chr12 52838376 52838523 -68419007 + B1_Mus2 SINE Alu 1 146 -1 7 988 1451 96 16 0 chr12 52838542 52838729 -68418801 + B2_Mm2 SINE B2 2 191 -4 7 988 229 74 17 69 chr12 52838743 52838801 -68418729 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 7 988 276 222 48 0 chr12 52839183 52839246 -68418284 + ID4_ SINE ID 8 73 -10 7 988 342 0 0 0 chr12 52839287 52839325 -68418205 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 988 23 0 0 0 chr12 52839487 52839510 -68418020 + AT_rich Low_complexity Low_complexity 1 23 0 8 988 301 169 45 30 chr12 52840131 52840198 -68417332 - Lx8 LINE L1 -2 7471 7404 8 988 387 0 0 0 chr12 52840220 52840263 -68417267 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 988 897 87 0 45 chr12 52840275 52840407 -68417123 - B1_Mm SINE Alu -21 126 1 8 988 682 274 147 0 chr12 52840415 52840612 -68416918 - B4A SINE B4 -60 232 7 8 988 220 309 22 67 chr12 52840649 52840739 -68416791 + PB1D10 SINE Alu 31 116 -1 8 988 398 244 116 16 chr12 52840944 52841065 -68416465 - ID_B1 SINE B4 -10 214 82 8 988 450 216 49 0 chr12 52841227 52841329 -68416201 - U6 snRNA snRNA 0 107 1 8 988 24 32 0 0 chr12 52841942 52841973 -68415557 + AT_rich Low_complexity Low_complexity 1 31 0 8 988 225 363 119 13 chr12 52842168 52842327 -68415203 - MER58B DNA MER1_type -1 340 165 8 988 567 272 128 0 chr12 52842330 52842525 -68415005 + ID_B1 SINE B4 2 221 -3 8 988 446 232 71 0 chr12 52842645 52842757 -68414773 - PB1D9 SINE Alu 0 120 1 8 988 896 47 78 0 chr12 52843030 52843158 -68414372 - B1_Mus1 SINE Alu 0 148 11 8 988 501 178 22 0 chr12 52843178 52843268 -68414262 + L1_Mur3 LINE L1 1011 1102 -6610 8 988 1006 48 0 0 chr12 52843268 52843392 -68414138 + B1_Mus1 SINE Alu 25 148 0 8 988 304 93 101 51 chr12 52843411 52843490 -68414040 + L1_Mur3 LINE L1 1085 1167 -6545 8 988 640 50 111 0 chr12 52843490 52843589 -68413941 + B2_Mm2 SINE B2 79 188 -7 8 988 1240 47 0 33 chr12 52843598 52843733 -68413797 + B1_Mus1 SINE Alu 1 135 -13 8 988 225 0 0 0 chr12 52843733 52843758 -68413772 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 8 988 1240 47 0 33 chr12 52843758 52843775 -68413755 + B1_Mus1 SINE Alu 136 148 0 8 988 2257 186 32 28 chr12 52843796 52844369 -68413161 + Lx6 LINE L1 5451 6031 -1429 8 988 892 271 49 4 chr12 52844377 52844603 -68412927 + Lx6 LINE L1 7049 7284 -176 8 988 272 104 42 0 chr12 52846535 52846583 -68410947 + (GAAAA)n Simple_repeat Simple_repeat 3 52 0 8 988 359 41 20 0 chr12 52847745 52847794 -68409736 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 988 476 255 48 28 chr12 52847842 52847987 -68409543 - B1F SINE Alu 0 149 2 8 988 180 0 0 0 chr12 52848058 52848078 -68409452 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 8 988 1078 127 0 13 chr12 52848079 52848238 -68409292 - B2_Mm2 SINE B2 -37 158 2 8 988 743 179 56 25 chr12 52848439 52848599 -68408931 + B2_Mm2 SINE B2 28 192 -3 8 988 201 74 0 0 chr12 52848855 52848882 -68408648 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 988 964 267 9 9 chr12 52849035 52849254 -68408276 - ID_B1 SINE B4 0 224 6 8 988 243 0 0 0 chr12 52850168 52850195 -68407335 + (TA)n Simple_repeat Simple_repeat 1 27 0 8 988 1135 96 7 0 chr12 52850223 52850369 -68407161 - B1_Mus2 SINE Alu 0 147 1 8 988 232 274 55 0 chr12 52850388 52850461 -68407069 + PB1 SINE Alu 51 127 0 8 988 293 329 115 34 chr12 52850468 52850616 -68406914 + RSINE1 SINE B4 3 162 -3 8 988 578 264 16 0 chr12 52850682 52850803 -68406727 + RSINE1 SINE B4 4 126 -39 8 988 844 220 42 57 chr12 52850859 52851023 -68406507 + B3 SINE B2 2 165 -51 8 988 671 21 41 0 chr12 52851023 52851120 -68406410 + (CA)n Simple_repeat Simple_repeat 2 102 0 8 988 844 220 42 57 chr12 52851120 52851167 -68406363 + B3 SINE B2 166 210 -6 8 988 647 146 12 189 chr12 52851518 52851687 -68405843 - B1_Mus1 SINE Alu -8 140 2 8 988 594 171 106 0 chr12 52853258 52853381 -68404149 - B1F SINE Alu -1 148 13 8 988 432 0 0 0 chr12 52853628 52853676 -68403854 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 988 615 246 9 0 chr12 52853681 52853795 -68403735 - RSINE1 SINE B4 -33 132 18 8 988 316 279 93 22 chr12 52854127 52854266 -68403264 - L2a LINE L2 -6 3420 3272 8 988 28 29 0 0 chr12 52855118 52855153 -68402377 + AT_rich Low_complexity Low_complexity 1 35 0 8 988 528 59 0 0 chr12 52855697 52855765 -68401765 + (TC)n Simple_repeat Simple_repeat 2 69 0 8 988 381 222 14 14 chr12 52855766 52855839 -68401691 - ID4 SINE ID -10 73 1 8 988 892 154 58 42 chr12 52856238 52856428 -68401102 + ORR1C2 LTR MaLR 2 194 -190 8 988 4534 223 77 19 chr12 52856471 52857591 -68399939 + ORR1C2-int LTR MaLR 186 1370 0 8 988 1884 183 34 31 chr12 52857591 52857974 -68399556 + ORR1C2 LTR MaLR 1 384 0 8 988 339 297 12 82 chr12 52858271 52858399 -68399131 - B1F1 SINE Alu -23 124 1 8 988 444 282 57 64 chr12 52858434 52858574 -68398956 + ID_B1 SINE B4 76 214 -10 8 988 1421 86 27 0 chr12 52859271 52859458 -68398072 + B2_Mm1t SINE B2 2 193 0 8 988 181 189 0 0 chr12 52859722 52859759 -68397771 - MIR SINE MIR -58 204 168 8 988 380 242 60 50 chr12 52860568 52860668 -68396862 - B1F SINE Alu -32 117 17 8 988 608 233 127 48 chr12 52860713 52860902 -68396628 - B3 SINE B2 -10 206 3 8 988 567 140 11 11 chr12 52861269 52861363 -68396167 - B1_Mur2 SINE Alu -2 147 54 8 988 243 233 38 76 chr12 52861628 52861707 -68395823 - MLT1D LTR MaLR -31 474 399 8 988 572 265 40 93 chr12 52861709 52861859 -68395671 - RSINE1 SINE B4 -22 143 2 8 988 604 264 8 16 chr12 52862303 52862430 -68395100 - RSINE1 SINE B4 -36 129 4 8 988 1448 59 43 11 chr12 52862881 52863068 -68394462 - B2_Mm2 SINE B2 -1 194 2 8 988 252 167 0 0 chr12 52863092 52863140 -68394390 + A-rich Low_complexity Low_complexity 1 48 0 8 988 325 151 0 0 chr12 52863638 52863691 -68393839 + L1Md_F3 LINE L1 6230 6282 -302 8 988 613 136 248 56 chr12 52863704 52863829 -68393701 + B1_Mur4 SINE Alu 1 149 -1 8 988 387 0 0 0 chr12 52863829 52863872 -68393658 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 8 988 1141 113 0 0 chr12 52863876 52864035 -68393495 + B2_Mm2 SINE B2 1 159 -36 8 988 228 67 0 0 chr12 52864035 52864065 -68393465 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 8 988 320 316 38 0 chr12 52864172 52864251 -68393279 - ID4_ SINE ID 0 83 2 8 988 425 260 62 16 chr12 52864265 52864394 -68393136 - B1F1 SINE Alu -5 144 10 8 988 497 329 6 42 chr12 52864423 52864591 -68392939 - RSINE1 SINE B4 -2 163 2 8 988 243 0 0 0 chr12 52864668 52864695 -68392835 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 8 988 1067 89 0 0 chr12 52864695 52864830 -68392700 - B1_Mus2 SINE Alu -12 135 1 8 988 496 267 86 14 chr12 52864837 52864991 -68392539 - ID_B1 SINE B4 -4 220 65 8 988 486 307 0 0 chr12 52865832 52865933 -68391597 + PB1D10 SINE Alu 9 109 -8 8 988 243 0 0 0 chr12 52865939 52865966 -68391564 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 988 1125 119 40 70 chr12 52865968 52866167 -68391363 + B2_Mm2 SINE B2 2 194 -1 8 988 186 71 0 0 chr12 52866218 52866246 -68391284 + (A)n Simple_repeat Simple_repeat 1 28 0 8 988 577 235 16 16 chr12 52866246 52866367 -68391163 + RSINE1 SINE B4 12 132 -33 8 988 256 301 21 31 chr12 52867055 52867151 -68390379 + B1_Mus1 SINE Alu 8 102 -46 8 988 725 297 36 0 chr12 52867456 52867621 -68389909 + B3A SINE B2 4 174 -24 8 988 235 355 40 0 chr12 52867666 52867742 -68389788 + ID4 SINE ID 2 80 -3 8 988 750 184 88 0 chr12 52868317 52868442 -68389088 + B1_Mur1 SINE Alu 5 140 -9 8 988 27 49 0 0 chr12 52868815 52868856 -68388674 + AT_rich Low_complexity Low_complexity 1 41 0 8 988 1270 54 0 0 chr12 52868954 52869101 -68388429 + B1_Mus1 SINE Alu 2 148 0 8 988 264 100 0 0 chr12 52869101 52869141 -68388389 + (A)n Simple_repeat Simple_repeat 1 40 0 8 988 723 100 27 9 chr12 52870673 52870784 -68386746 - B1_Mus1 SINE Alu 0 148 36 8 988 255 292 92 0 chr12 52870881 52870946 -68386584 - ID4 SINE ID -9 74 4 8 988 243 188 0 0 chr12 52871880 52871928 -68385602 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 988 299 300 0 0 chr12 52872327 52872397 -68385133 - ID SINE ID -154 70 1 8 988 427 200 79 112 chr12 52872979 52873131 -68384399 - B1F2 SINE Alu -2 147 1 8 988 323 224 24 130 chr12 52873841 52873964 -68383566 + MT2B LTR ERVL 169 278 -323 8 988 635 199 7 44 chr12 52873857 52873994 -68383536 + B1_Mur2 SINE Alu 18 149 0 8 988 24 67 0 0 chr12 52874013 52874058 -68383472 + AT_rich Low_complexity Low_complexity 1 45 0 8 988 295 218 18 0 chr12 52874203 52874258 -68383272 - B3 SINE B2 -157 59 4 8 988 547 81 81 6 chr12 52874263 52874424 -68383106 + (TG)n Simple_repeat Simple_repeat 1 173 0 8 988 483 272 35 81 chr12 52874424 52874596 -68382934 - RSINE1 SINE B4 0 165 2 8 988 260 314 124 0 chr12 52875242 52875347 -68382183 + ID_B1 SINE B4 81 198 -26 8 988 1238 42 28 0 chr12 52875380 52875522 -68382008 + B1_Mus1 SINE Alu 2 147 -1 8 988 240 86 0 0 chr12 52876257 52876292 -68381238 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8 988 3890 107 44 5 chr12 52876292 52876849 -68380681 - Lx3A LINE L1 -12 6969 6391 8 988 268 260 53 38 chr12 52876867 52876999 -68380531 + ID_B1 SINE B4 86 219 -5 8 988 329 98 0 47 chr12 52877149 52877213 -68380317 + (T)n Simple_repeat Simple_repeat 1 61 0 8 988 1118 58 0 0 chr12 52877213 52877352 -68380178 - B1_Mus1 SINE Alu 0 148 10 8 988 293 263 242 17 chr12 52877740 52877751 -68379779 + ID_B1 SINE B4 78 155 -69 8 988 433 265 29 0 chr12 52877751 52877853 -68379677 + PB1D7 SINE Alu 9 113 -7 8 988 297 236 120 94 chr12 52878002 52878119 -68379411 + PB1D9 SINE Alu 1 120 0 8 988 1629 38 32 0 chr12 52878131 52878317 -68379213 + B2_Mm2 SINE B2 1 192 -3 9 988 416 270 144 0 chr12 52878677 52878788 -68378742 - RSINE1 SINE B4 -36 129 3 9 988 575 315 85 41 chr12 52878789 52879060 -68378470 + MTE2a LTR MaLR 4 286 -93 9 988 1949 134 45 10 chr12 52879060 52879370 -68378160 + ORR1A4 LTR MaLR 1 321 -8 9 988 305 272 54 0 chr12 52879364 52879456 -68378074 + MTE2a LTR MaLR 308 404 -15 9 988 1300 54 0 0 chr12 52879466 52879613 -68377917 + B1_Mm SINE Alu 1 147 0 9 988 812 254 94 5 chr12 52879867 52880069 -68377461 + ID_B1 SINE B4 3 222 -2 9 988 945 231 25 25 chr12 52880118 52880322 -68377208 + B3 SINE B2 1 204 -12 9 988 509 158 24 48 chr12 52880325 52880451 -68377079 - L1Md_F2 LINE L1 0 6582 6460 9 988 704 82 10 20 chr12 52880451 52880536 -68376994 - L1_Mus1 LINE L1 -374 6193 6108 9 988 1112 105 88 0 chr12 52880546 52880717 -68376813 - B2_Mm2 SINE B2 -8 187 2 9 988 208 161 0 51 chr12 52880974 52881033 -68376497 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 9 988 266 250 87 43 chr12 52881591 52881683 -68375847 + ID_B1 SINE B4 84 179 -45 9 988 244 295 62 71 chr12 52881683 52881703 -68375827 + PB1D10 SINE Alu 3 113 -4 9 988 835 266 143 22 chr12 52881703 52882226 -68375304 + Lx8 LINE L1 6850 7470 -3 9 988 700 160 31 31 chr12 52882259 52882388 -68375142 + B1_Mur4 SINE Alu 2 130 -20 9 988 447 254 8 34 chr12 52882676 52882794 -68374736 + PB1D9 SINE Alu 5 119 -1 9 988 553 269 174 0 chr12 52883145 52883312 -68374218 + B3 SINE B2 2 197 -19 9 988 360 284 12 12 chr12 52883711 52883793 -68373737 - RSINE1 SINE B4 -46 119 38 9 988 956 212 20 49 chr12 52883854 52884057 -68373473 + B3A SINE B2 2 198 0 9 988 284 313 125 15 chr12 52884185 52884202 -68373328 - ID_B1 SINE B4 0 224 132 9 988 343 273 108 9 chr12 52884202 52884313 -68373217 - B1F2 SINE Alu -27 122 1 9 988 318 320 89 10 chr12 52884686 52884787 -68372743 - PB1D7 SINE Alu -10 110 2 9 988 38 22 0 0 chr12 52884890 52884935 -68372595 + AT_rich Low_complexity Low_complexity 1 45 0 9 988 27 62 0 0 chr12 52885602 52885650 -68371880 + AT_rich Low_complexity Low_complexity 1 48 0 9 988 853 199 14 0 chr12 52885760 52885906 -68371624 + B1_Mur4 SINE Alu 3 150 0 9 988 806 195 63 26 chr12 52885912 52886102 -68371428 + B3 SINE B2 13 209 -7 9 988 1318 41 0 0 chr12 52886169 52886316 -68371214 + B1_Mm SINE Alu 1 147 0 9 988 32 0 0 0 chr12 52886316 52886348 -68371182 + AT_rich Low_complexity Low_complexity 1 32 0 9 988 550 223 55 121 chr12 52887122 52887321 -68370209 - B3A SINE B2 -8 187 2 9 988 274 283 28 0 chr12 52887416 52887522 -68370008 - MER58B DNA MER1_type -106 235 127 9 988 863 228 39 44 chr12 52887558 52887764 -68369766 + B3A SINE B2 8 212 -4 9 988 308 284 0 13 chr12 52887953 52888028 -68369502 + PB1D10 SINE Alu 18 91 -26 9 988 345 350 0 70 chr12 52888031 52888160 -68369370 + PB1D7 SINE Alu 1 120 0 9 988 1296 88 66 6 chr12 52888164 52888346 -68369184 + B2_Mm2 SINE B2 1 193 -2 9 988 180 0 0 0 chr12 52888558 52888578 -68368952 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 9 988 581 259 19 71 chr12 52888581 52888793 -68368737 + B3 SINE B2 1 201 -15 9 988 462 240 10 0 chr12 52889384 52889488 -68368042 - B1_Mus1 SINE Alu -38 110 6 9 988 226 159 169 31 chr12 52889790 52889855 -68367675 - B1F SINE Alu -31 118 45 9 988 420 207 110 17 chr12 52890021 52890139 -68367391 + B1_Mur1 SINE Alu 21 149 0 9 988 559 244 15 8 chr12 52890360 52890492 -68367038 - B1F SINE Alu -7 142 10 9 988 347 221 231 23 chr12 52890803 52890933 -68366597 - RSINE1 SINE B4 -4 161 5 9 988 290 294 101 14 chr12 52891923 52891936 -68365594 + YREP_Mm Unknown Unknown 153 311 -1499 9 988 583 301 0 0 chr12 52891936 52892069 -68365461 - ID_B1 SINE B4 -5 219 87 9 988 895 251 117 61 chr12 52892610 52893093 -68364437 + L1MA5 LINE L1 5774 6300 0 9 988 1571 129 187 10 chr12 52893110 52893415 -68364115 + Lx4B LINE L1 6695 7053 -5 9 988 180 77 0 0 chr12 52893415 52893441 -68364089 + (CATA)n Simple_repeat Simple_repeat 2 27 0 9 988 435 288 38 0 chr12 52893660 52893792 -68363738 + RSINE1 SINE B4 27 163 -2 9 988 332 319 41 32 chr12 52893833 52893956 -68363574 + ID_B1 SINE B4 95 218 -6 9 988 1242 82 47 0 chr12 52893969 52894139 -68363391 + B2_Mm2 SINE B2 4 181 -14 9 988 239 289 93 37 chr12 52894767 52894875 -68362655 + PB1D10 SINE Alu 2 115 -2 9 988 1200 104 40 0 chr12 52894914 52895087 -68362443 + B2_Mm2 SINE B2 1 180 -15 9 988 397 107 340 28 chr12 52895155 52895261 -68362269 + B2_Mm2 SINE B2 47 185 -10 9 988 218 189 0 0 chr12 52895261 52895298 -68362232 + (TATG)n Simple_repeat Simple_repeat 4 40 0 9 988 285 128 0 0 chr12 52895298 52895345 -68362185 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 988 624 181 15 38 chr12 52896690 52896822 -68360708 - B1_Mus1 SINE Alu 0 148 20 9 988 504 0 0 0 chr12 52896825 52896881 -68360649 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 988 423 0 0 0 chr12 52896881 52896927 -68360603 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 988 186 71 0 0 chr12 52897206 52897234 -68360296 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 9 988 278 232 145 9 chr12 52897730 52897890 -68359640 + Lx8 LINE L1 5106 5295 -585 9 988 983 90 0 0 chr12 52897892 52898026 -68359504 + B1_Mus2 SINE Alu 2 135 -12 9 988 243 0 0 0 chr12 52898027 52898054 -68359476 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 988 1326 240 97 8 chr12 52898110 52898507 -68359023 + Lx8 LINE L1 5472 5906 -1567 9 988 481 188 57 41 chr12 52898546 52898668 -68358862 + B1_Mur1 SINE Alu 1 124 -25 9 988 660 230 62 28 chr12 52899253 52899432 -68358098 + B3A SINE B2 11 195 -3 9 988 189 0 0 0 chr12 52899471 52899492 -68358038 + (TC)n Simple_repeat Simple_repeat 1 21 0 9 988 297 0 0 0 chr12 52899492 52899524 -68358006 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 988 557 234 76 62 chr12 52899832 52900042 -68357488 + B3 SINE B2 4 216 0 9 988 26 50 0 0 chr12 52900046 52900086 -68357444 + AT_rich Low_complexity Low_complexity 1 40 0 9 988 878 194 86 10 chr12 52901013 52901211 -68356319 - B3 SINE B2 0 216 4 9 988 663 232 85 13 chr12 52901441 52901594 -68355936 + RSINE1 SINE B4 2 165 0 9 988 247 182 29 29 chr12 52901594 52901662 -68355868 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 988 282 56 0 0 chr12 52901968 52902004 -68355526 + (A)n Simple_repeat Simple_repeat 1 36 0 9 988 377 264 22 65 chr12 52902169 52902180 -68355350 + ID_B1 SINE B4 78 206 -15 9 988 489 260 8 8 chr12 52902180 52902304 -68355226 + B1F2 SINE Alu 6 129 -20 9 988 588 242 80 25 chr12 52902488 52902687 -68354843 + B3 SINE B2 4 213 -3 9 988 285 51 0 0 chr12 52902704 52902743 -68354787 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 9 988 690 98 19 19 chr12 52902987 52903112 -68354418 - B1_Mur3 SINE Alu -2 147 11 9 988 21 0 0 0 chr12 52904339 52904360 -68353170 + AT_rich Low_complexity Low_complexity 1 21 0 9 988 453 256 31 16 chr12 52904387 52904514 -68353016 - B1_Mur1 SINE Alu -20 129 1 9 988 181 91 44 22 chr12 52905312 52905357 -68352173 + T-rich Low_complexity Low_complexity 6 51 0 9 988 356 202 0 25 chr12 52905494 52905575 -68351955 + PB1D9 SINE Alu 40 118 -2 9 988 204 40 0 0 chr12 52905577 52905602 -68351928 + (A)n Simple_repeat Simple_repeat 1 25 0 9 988 1321 68 90 0 chr12 52905606 52905783 -68351747 + B2_Mm1a SINE B2 1 193 0 9 988 306 312 9 44 chr12 52906315 52906429 -68351101 + PB1D10 SINE Alu 1 110 -7 9 988 374 89 0 0 chr12 52906462 52906518 -68351012 + PB1D10 SINE Alu 62 117 0 9 988 423 38 0 0 chr12 52906622 52906675 -68350855 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 988 639 253 40 14 chr12 52906676 52906824 -68350706 - B3A SINE B2 -38 160 9 9 988 222 118 0 0 chr12 52907896 52907930 -68349600 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 988 432 51 0 0 chr12 52907982 52908041 -68349489 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 988 596 220 68 8 chr12 52908059 52908192 -68349338 - RSINE1 SINE B4 -14 151 11 9 988 712 58 67 9 chr12 52908385 52908490 -68349040 + RMER6C LTR ERVK 1 111 -579 9 988 405 53 0 17 chr12 52908473 52908531 -68348999 + MT2B2 LTR ERVL 181 237 -347 9 988 371 150 0 0 chr12 52908691 52908751 -68348779 - B1F SINE Alu 0 149 90 9 988 423 0 0 0 chr12 52908865 52908912 -68348618 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 988 279 0 0 0 chr12 52908913 52908944 -68348586 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 988 724 127 79 0 chr12 52908968 52909094 -68348436 - B1_Mur3 SINE Alu -11 138 3 9 988 802 226 130 90 chr12 52909166 52909443 -68348087 + B4A SINE B4 5 292 0 9 988 701 236 78 10 chr12 52909465 52909658 -68347872 - B3 SINE B2 -1 215 10 9 988 1294 90 51 0 chr12 52910251 52910429 -68347101 - B2_Mm2 SINE B2 -7 188 2 9 988 183 80 0 0 chr12 52910491 52910516 -68347014 + (CCCTAA)n Simple_repeat Simple_repeat 3 27 0 9 988 224 307 146 11 chr12 52911099 52911188 -68346342 + PB1D7 SINE Alu 14 114 -6 9 988 527 288 52 28 chr12 52911249 52911460 -68346070 + B4A SINE B4 57 272 -20 9 988 372 250 11 0 chr12 52911520 52911608 -68345922 + ID_B1 SINE B4 81 169 -55 1 988 404 228 69 0 chr12 52911530 52911631 -68345899 + PB1D10 SINE Alu 10 117 0 1 988 589 209 96 18 chr12 52911641 52911807 -68345723 + Tigger5 DNA MER2_type 49 227 -2179 1 988 391 304 0 9 chr12 52912082 52912198 -68345332 + Tigger5 DNA MER2_type 2291 2405 -1 1 988 277 287 59 25 chr12 52912269 52912387 -68345143 + L1MEf LINE L1 85 206 -5994 1 988 408 258 8 84 chr12 52912409 52912540 -68344990 - B3A SINE B2 -77 121 1 1 988 241 253 72 0 chr12 52912801 52912884 -68344646 + MTEb LTR MaLR 287 375 -4 1 988 1014 88 0 104 chr12 52913258 52913422 -68344108 + B1_Mus1 SINE Alu 2 148 0 1 988 698 208 74 50 chr12 52913495 52913697 -68343833 + B3 SINE B2 10 216 0 1 988 289 228 112 12 chr12 52913705 52913785 -68343745 + RSINE1 SINE B4 9 96 -69 1 988 324 0 0 0 chr12 52913785 52913821 -68343709 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 988 1418 69 31 21 chr12 52913839 52914032 -68343498 + B2_Mm2 SINE B2 1 195 0 1 988 1032 82 27 27 chr12 52914061 52914211 -68343319 + B1_Mur4 SINE Alu 1 150 0 1 988 582 136 254 0 chr12 52914448 52914566 -68342964 - B1_Mur4 SINE Alu -1 149 2 1 988 272 232 58 0 chr12 52914598 52914667 -68342863 + ID4_ SINE ID 3 75 -8 1 988 379 280 68 8 chr12 52914758 52914891 -68342639 + B1_Mur1 SINE Alu 9 149 0 1 988 353 290 98 8 chr12 52914899 52915031 -68342499 - L1M5 LINE L1 -1300 4846 4703 1 988 428 197 118 0 chr12 52915031 52915146 -68342384 - PB1D10 SINE Alu -21 128 6 1 988 533 248 61 23 chr12 52915206 52915338 -68342192 - ID_B1 SINE B4 -6 218 82 1 988 469 251 63 58 chr12 52915339 52915546 -68341984 - L1M2 LINE L1 -865 5278 5071 1 988 1207 41 7 0 chr12 52915764 52915910 -68341620 + B1_Mus1 SINE Alu 2 148 0 1 988 207 0 0 0 chr12 52915910 52915933 -68341597 + (A)n Simple_repeat Simple_repeat 1 23 0 1 988 637 308 38 76 chr12 52916049 52916418 -68341112 + MT2A LTR ERVL 4 358 -175 1 988 377 291 155 24 chr12 52916484 52916899 -68340631 - L1M2 LINE L1 -1306 4837 4357 1 988 189 0 0 0 chr12 52916902 52916923 -68340607 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 988 1146 52 0 0 chr12 52916933 52917068 -68340462 - B1_Mm SINE Alu -12 135 1 1 988 816 200 0 0 chr12 52917166 52917346 -68340184 + GA-rich Low_complexity Low_complexity 1 180 0 1 988 246 128 0 0 chr12 52917354 52917393 -68340137 + (GGA)n Simple_repeat Simple_repeat 3 41 0 1 988 528 175 52 17 chr12 52917504 52917620 -68339910 + PB1D9 SINE Alu 1 120 0 1 988 290 191 28 56 chr12 52917764 52917836 -68339694 - ID_B1 SINE B4 -8 216 147 1 988 463 149 0 0 chr12 52918530 52918604 -68338926 - B1F1 SINE Alu -60 89 16 1 988 892 223 16 21 chr12 52918661 52918849 -68338681 + B3 SINE B2 2 188 -28 1 988 219 36 0 0 chr12 52918849 52918877 -68338653 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 988 434 231 84 17 chr12 52919344 52919463 -68338067 + B1_Mur1 SINE Alu 20 146 -3 1 988 561 271 136 37 chr12 52919464 52919816 -68337714 + Charlie1a DNA MER1_type 164 550 -905 1 988 367 304 60 9 chr12 52919816 52919932 -68337598 + RSINE1 SINE B4 8 129 -36 1 988 462 36 0 0 chr12 52919945 52920001 -68337529 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 988 708 272 82 47 chr12 52920030 52920177 -68337353 + Charlie1a DNA MER1_type 535 680 -775 1 988 1257 47 141 6 chr12 52920177 52920347 -68337183 + B2_Mm2 SINE B2 2 194 -1 1 988 708 272 82 47 chr12 52920347 52920539 -68336991 + Charlie1a DNA MER1_type 681 886 -569 1 988 395 227 66 25 chr12 52920546 52920668 -68336862 + B1F SINE Alu 10 136 -13 1 988 403 312 9 0 chr12 52920701 52920813 -68336717 + ID_B1 SINE B4 4 116 -108 1 988 598 136 142 67 chr12 52920917 52921051 -68336479 - B1_Mur4 SINE Alu -1 149 6 1 988 358 306 35 18 chr12 52921114 52921227 -68336303 + B3 SINE B2 2 116 -100 1 988 258 354 62 0 chr12 52921304 52921417 -68336113 + RSINE1 SINE B4 46 165 0 1 988 477 123 0 0 chr12 52921440 52921453 -68336077 + (A)n Simple_repeat Simple_repeat 1 13 0 1 988 1191 61 0 0 chr12 52921453 52921600 -68335930 + B1_Mus2 SINE Alu 1 147 0 1 988 477 123 0 0 chr12 52921600 52921667 -68335863 + (A)n Simple_repeat Simple_repeat 1 67 0 1 988 226 281 240 0 chr12 52921668 52921787 -68335743 + B4 SINE B4 83 230 -62 1 988 478 313 20 7 chr12 52921787 52921938 -68335592 + RSINE1 SINE B4 2 154 -11 1 988 654 193 56 28 chr12 52922150 52922294 -68335236 + B1_Mur2 SINE Alu 2 149 0 1 988 2872 138 150 23 chr12 52922295 52922860 -68334670 + Lx4A LINE L1 6231 6867 -191 1 988 375 107 54 0 chr12 52922860 52922916 -68334614 + Lx4A LINE L1 6809 6867 -191 1 988 398 89 54 0 chr12 52922916 52922972 -68334558 + Lx4A LINE L1 6809 6867 -191 1 988 375 107 54 0 chr12 52922972 52923028 -68334502 + Lx4A LINE L1 6809 6867 -191 1 988 398 89 54 0 chr12 52923028 52923084 -68334446 + Lx4A LINE L1 6809 6867 -191 1 988 1251 135 43 81 chr12 52923084 52923342 -68334188 + Lx4A LINE L1 6809 7056 -2 1 988 1115 134 42 11 chr12 52923344 52923533 -68333997 - B2_Mm2 SINE B2 0 195 1 1 988 266 241 71 12 chr12 52923607 52923691 -68333839 + RSINE1 SINE B4 72 160 -5 1 988 282 95 0 0 chr12 52923692 52923734 -68333796 + (CATA)n Simple_repeat Simple_repeat 1 42 0 1 988 801 185 0 0 chr12 52923796 52923926 -68333604 + B3 SINE B2 1 130 -86 1 988 482 259 0 25 chr12 52924188 52924307 -68333223 - PB1D7 SINE Alu 0 120 5 1 988 237 33 0 0 chr12 52924943 52924973 -68332557 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1 988 1229 41 0 0 chr12 52924977 52925124 -68332406 + B1_Mus2 SINE Alu 1 147 0 1 988 406 218 5 230 chr12 52925145 52925336 -68332194 + B1F SINE Alu 1 148 -1 1 988 374 189 288 0 chr12 52925354 52925465 -68332065 + B1F2 SINE Alu 7 149 0 1 988 437 204 82 0 chr12 52925369 52925467 -68332063 + ID_B1 SINE B4 118 223 -1 1 988 211 282 47 12 chr12 52925557 52925643 -68331887 - MIRb SINE MIR -58 210 122 1 988 823 183 160 11 chr12 52925685 52925873 -68331657 + B3 SINE B2 1 216 0 1 988 683 160 40 0 chr12 52925947 52926072 -68331458 - B1_Mus1 SINE Alu -9 139 10 1 988 223 339 16 56 chr12 52926175 52926300 -68331230 + RSINE1 SINE B4 44 163 -2 1 988 723 184 66 56 chr12 52926453 52926649 -68330881 + B3A SINE B2 1 198 0 1 988 180 0 0 0 chr12 52926665 52926685 -68330845 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 988 292 239 30 0 chr12 52927157 52927224 -68330306 - ID_B1 SINE B4 0 224 156 1 988 429 214 58 0 chr12 52927227 52927330 -68330200 - ID_B1 SINE B4 -22 202 94 1 988 673 243 14 7 chr12 52927719 52927864 -68329666 + RSINE1 SINE B4 4 149 -16 1 988 261 0 0 0 chr12 52927869 52927898 -68329632 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 988 201 289 0 0 chr12 52928624 52928669 -68328861 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 1 988 1139 75 0 7 chr12 52928774 52928922 -68328608 + B1_Mm SINE Alu 1 147 0 1 988 355 263 91 0 chr12 52931150 52931249 -68326281 + ID_B1 SINE B4 91 198 -26 1 988 243 229 0 0 chr12 52931401 52931449 -68326081 + MER5B DNA MER1_type 2 49 -129 1 988 275 149 21 0 chr12 52931451 52931498 -68326032 - L1MC1 LINE L1 -21 6312 6265 1 988 267 169 75 30 chr12 52931565 52931632 -68325898 - L1MC1 LINE L1 -370 5974 5905 1 988 206 143 0 51 chr12 52931687 52931746 -68325784 + T-rich Low_complexity Low_complexity 2 57 0 1 988 328 212 25 0 chr12 52931760 52931840 -68325690 - PB1D10 SINE Alu 0 117 36 1 988 382 210 44 99 chr12 52932042 52932129 -68325401 + L1MD LINE L1 5221 5303 -843 1 988 1111 62 7 7 chr12 52932129 52932276 -68325254 + B1_Mus1 SINE Alu 2 148 0 1 988 382 197 46 103 chr12 52932276 52932397 -68325133 + L1MD LINE L1 5304 5420 -2575 1 988 259 305 90 38 chr12 52932423 52932556 -68324974 + B3A SINE B2 59 198 0 1 988 391 260 115 115 chr12 52932591 52932791 -68324739 + ID_B1 SINE B4 2 201 -23 1 988 626 185 0 40 chr12 52933258 52933382 -68324148 + PB1D9 SINE Alu 1 119 -1 1 988 207 100 0 0 chr12 52933441 52933471 -68324059 + (A)n Simple_repeat Simple_repeat 1 30 0 1 988 496 188 39 19 chr12 52933621 52933724 -68323806 + B3 SINE B2 26 130 -86 1 988 635 217 132 0 chr12 52933991 52934120 -68323410 + B1_Mur1 SINE Alu 1 146 -3 1 988 225 94 0 0 chr12 52934131 52934163 -68323367 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 1 988 282 206 59 0 chr12 52934163 52934231 -68323299 + L1MD LINE L1 5607 5678 -655 1 988 499 260 8 8 chr12 52934282 52934406 -68323124 - ID_B1 SINE B4 -8 216 93 1 988 233 239 0 0 chr12 52934537 52934583 -68322947 + L1MD LINE L1 5724 5769 -575 1 988 540 45 0 0 chr12 52934635 52934702 -68322828 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 1 988 1105 105 5 174 chr12 52934702 52934781 -68322749 - B2_Mm2 SINE B2 -10 185 124 1 988 1167 44 0 0 chr12 52934781 52934917 -68322613 + B1_Mus2 SINE Alu 2 137 -10 1 988 1105 105 5 174 chr12 52934917 52935056 -68322474 - B2_Mm2 SINE B2 -72 123 4 1 988 679 203 30 67 chr12 52935246 52935410 -68322120 - RSINE1 SINE B4 -5 160 3 1 988 464 228 203 0 chr12 52935519 52935642 -68321888 - B1F SINE Alu 0 149 2 1 988 647 284 15 15 chr12 52936342 52936539 -68320991 + ID_B1 SINE B4 26 222 -2 1 988 322 266 68 34 chr12 52937049 52937166 -68320364 + B4A SINE B4 108 228 -64 1 988 455 262 128 27 chr12 52937168 52937317 -68320213 + RSINE1 SINE B4 2 165 0 1 988 25 0 0 0 chr12 52937654 52937679 -68319851 + AT_rich Low_complexity Low_complexity 1 25 0 1 988 469 207 81 16 chr12 52937719 52937842 -68319688 - B1F SINE Alu -1 148 18 1 988 276 308 11 0 chr12 52937860 52937951 -68319579 - ID_B1 SINE B4 0 224 133 1 988 645 197 83 0 chr12 52937969 52938101 -68319429 - B1_Mur4 SINE Alu -7 143 1 1 988 376 262 62 0 chr12 52938101 52938246 -68319284 - L1M4 LINE L1 -1349 4797 4644 1 988 196 53 0 50 chr12 52938246 52938286 -68319244 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1 988 1191 61 0 0 chr12 52938287 52938435 -68319095 - B1_Mus1 SINE Alu 0 148 1 1 988 186 176 0 0 chr12 52938467 52938518 -68319012 + A-rich Low_complexity Low_complexity 1 51 0 1 988 873 248 5 5 chr12 52938524 52938735 -68318795 - B3 SINE B2 -4 212 2 1 988 24 0 0 0 chr12 52939127 52939151 -68318379 + AT_rich Low_complexity Low_complexity 1 24 0 1 988 247 315 27 34 chr12 52939248 52939396 -68318134 - L1M4 LINE L1 -3523 2623 2477 1 988 258 164 0 0 chr12 52939622 52939677 -68317853 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 988 1499 47 16 0 chr12 52939734 52939924 -68317606 - B2_Mm1t SINE B2 0 193 1 1 988 383 248 86 0 chr12 52939924 52940041 -68317489 - L1M4 LINE L1 -3755 2391 2265 1 988 322 260 0 0 chr12 52940060 52940133 -68317397 - tRNA-Ala-GCY_ tRNA tRNA 0 75 3 1 988 1988 137 115 108 chr12 52940133 52940560 -68316970 - RLTR23 LTR ERV1 0 430 1 1 988 542 210 71 21 chr12 52940589 52940730 -68316800 + B1_Mur1 SINE Alu 2 149 0 1 988 676 179 28 24 chr12 52940879 52941070 -68316460 - B3 SINE B2 -8 187 3 1 988 252 0 0 0 chr12 52941070 52941098 -68316432 + (T)n Simple_repeat Simple_repeat 1 28 0 1 988 2476 180 79 94 chr12 52941760 52942172 -68315358 - Lx9 LINE L1 -7 7637 7234 1 988 1930 155 76 83 chr12 52942172 52942536 -68314994 + MTC LTR MaLR 1 365 -56 1 988 1245 28 0 14 chr12 52942536 52942683 -68314847 - B1_Mus1 SINE Alu -2 146 2 1 988 1930 155 76 83 chr12 52942683 52942741 -68314789 + MTC LTR MaLR 366 420 -1 1 988 2476 180 79 94 chr12 52942741 52943001 -68314529 - Lx9 LINE L1 -411 7233 6975 1 988 555 193 88 7 chr12 52943037 52943162 -68314368 + B1_Mur1 SINE Alu 3 139 -10 1 988 189 74 0 0 chr12 52943162 52943189 -68314341 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 1 988 264 312 12 48 chr12 52943242 52943326 -68314204 + ID4 SINE ID 2 82 -1 1 988 271 325 0 0 chr12 52944193 52944276 -68313254 - PB1D10 SINE Alu 0 117 35 1 988 227 278 144 39 chr12 52944377 52944557 -68312973 + ID_B1 SINE B4 2 200 -24 1 988 277 225 0 59 chr12 52944971 52945056 -68312474 + ID4_ SINE ID 1 80 -3 1 988 250 239 200 64 chr12 52946376 52946501 -68311029 - ID_B1 SINE B4 -1 223 82 1 988 1186 50 0 0 chr12 52946672 52946812 -68310718 - B1_Mus1 SINE Alu -8 140 1 1 988 344 261 88 155 chr12 52947596 52947777 -68309753 + B4 SINE B4 56 224 -68 1 988 743 132 75 30 chr12 52947650 52947783 -68309747 + B1_Mus1 SINE Alu 10 148 0 1 988 400 303 13 58 chr12 52947806 52947960 -68309570 + ID_B1 SINE B4 78 224 0 1 988 453 267 92 41 chr12 52948179 52948374 -68309156 + B3A SINE B2 6 210 -6 1 988 1028 54 31 0 chr12 52948378 52948508 -68309022 + B1_Mus2 SINE Alu 2 135 -12 1 988 234 62 0 0 chr12 52948508 52948540 -68308990 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 1 988 1008 84 28 0 chr12 52948544 52948686 -68308844 + B1_Mm SINE Alu 2 147 0 1 988 345 100 0 0 chr12 52948686 52948736 -68308794 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1 988 897 206 121 0 chr12 52949107 52949306 -68308224 + ID_B1 SINE B4 2 224 0 1 988 207 100 0 0 chr12 52949327 52949357 -68308173 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 988 396 322 58 19 chr12 52949573 52949728 -68307802 + RSINE1 SINE B4 5 165 0 1 988 952 97 0 0 chr12 52949745 52949879 -68307651 - B1_Mus2 SINE Alu 0 147 14 1 988 181 54 0 98 chr12 52949881 52949922 -68307608 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1 988 270 286 0 0 chr12 52949996 52950052 -68307478 + tRNA-Ala-GCY_ tRNA tRNA 14 69 -6 1 988 217 237 62 62 chr12 52950905 52950986 -68306544 - ID4_ SINE ID -1 82 2 1 988 303 233 0 189 chr12 52951547 52951615 -68305915 + B1_Mur4 SINE Alu 8 68 -82 1 988 1518 78 0 0 chr12 52951615 52951808 -68305722 + B2_Mm2 SINE B2 1 193 -2 1 988 303 233 0 189 chr12 52951808 52951845 -68305685 + B1_Mur4 SINE Alu 69 93 -57 1 988 632 268 52 91 chr12 52952220 52952450 -68305080 + B4A SINE B4 1 221 -71 1 988 363 121 0 0 chr12 52952952 52953010 -68304520 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 989 264 200 0 0 chr12 52953198 52953253 -68304277 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 989 1288 218 27 74 chr12 52953253 52953619 -68303911 - MT2B LTR ERVL 0 601 253 1 989 929 156 0 0 chr12 52953657 52953792 -68303738 + B1_Mur4 SINE Alu 1 135 -15 1 989 854 181 38 0 chr12 52953792 52953952 -68303578 + RLTR20B1 LTR ERVK 4 169 -408 1 989 1048 167 19 10 chr12 52953953 52954159 -68303371 + RLTR20B1 LTR ERVK 320 527 -36 1 989 569 219 8 38 chr12 52954236 52954369 -68303161 - MT2B LTR ERVL -404 129 1 1 989 665 217 0 6 chr12 52954379 52954560 -68302970 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 989 816 74 0 0 chr12 52954606 52954714 -68302816 + B1_Mus1 SINE Alu 36 143 -5 1 989 246 32 0 0 chr12 52954717 52954748 -68302782 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 989 313 294 17 52 chr12 52954788 52954864 -68302666 + PB1D7 SINE Alu 9 82 -38 1 989 1363 141 48 251 chr12 52954864 52955338 -68302192 + ORR1C1 LTR MaLR 1 378 0 1 989 313 294 17 52 chr12 52955338 52955376 -68302154 + PB1D7 SINE Alu 83 119 -1 1 989 554 246 117 23 chr12 52955385 52955556 -68301974 + ID_B1 SINE B4 3 189 -35 1 989 225 154 0 0 chr12 52955806 52955845 -68301685 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 989 225 298 0 111 chr12 52955912 52956029 -68301501 + B3 SINE B2 104 207 -9 1 989 392 242 21 21 chr12 52956054 52956151 -68301379 + B1F SINE Alu 53 149 0 1 989 583 256 66 0 chr12 52956155 52956292 -68301238 + RSINE1 SINE B4 2 147 -18 1 989 324 0 0 0 chr12 52956292 52956328 -68301202 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 989 1231 35 0 7 chr12 52956779 52956924 -68300606 + B1_Mus1 SINE Alu 2 145 -3 1 989 231 88 0 0 chr12 52956982 52957016 -68300514 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1 989 259 309 36 0 chr12 52957016 52957100 -68300430 - ID_B1 SINE B4 -9 215 129 1 989 817 209 0 0 chr12 52957314 52957462 -68300068 + B1_Mur1 SINE Alu 2 149 0 1 989 730 140 354 0 chr12 52957638 52957802 -68299728 + URR1A DNA MER1_type 5 226 0 1 989 304 303 38 83 chr12 52958006 52958139 -68299391 + RSINE1 SINE B4 3 129 -36 1 989 308 294 0 0 chr12 52958263 52958331 -68299199 - PB1D10 SINE Alu -33 84 17 1 989 1084 53 0 0 chr12 52958376 52958509 -68299021 + B1_Mus1 SINE Alu 2 134 -14 1 989 329 58 0 19 chr12 52958510 52958563 -68298967 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 1 989 617 13 0 0 chr12 52958829 52958905 -68298625 + B1_Mus2 SINE Alu 64 139 -8 1 989 396 0 0 0 chr12 52958905 52958949 -68298581 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 1 989 272 297 160 32 chr12 52958968 52959250 -68298280 - MER31A LTR ERV1 -164 321 2 1 989 316 266 99 18 chr12 52959510 52959621 -68297909 + PB1D9 SINE Alu 1 120 0 1 989 514 273 141 20 chr12 52959930 52960128 -68297402 + ID_B1 SINE B4 3 224 0 1 989 251 230 93 13 chr12 52960146 52960221 -68297309 + ID2 SINE ID 2 82 -1 1 989 299 291 53 26 chr12 52960380 52960493 -68297037 - B1F2 SINE Alu -28 121 6 1 989 1044 136 4 4 chr12 52960902 52961132 -68296398 + (GAA)n Simple_repeat Simple_repeat 1 230 0 1 989 222 118 0 0 chr12 52961132 52961166 -68296364 + (TAG)n Simple_repeat Simple_repeat 2 35 0 1 989 240 365 29 7 chr12 52961194 52961332 -68296198 + B1F SINE Alu 1 141 -8 1 989 222 175 0 0 chr12 52961339 52961366 -68296164 + A-rich Low_complexity Low_complexity 1 27 0 1 989 1189 62 0 0 chr12 52961366 52961512 -68296018 + B1_Mm SINE Alu 2 147 0 1 989 222 175 0 0 chr12 52961512 52961547 -68295983 + A-rich Low_complexity Low_complexity 28 62 0 1 989 866 144 26 40 chr12 52961559 52961711 -68295819 + B1_Mur4 SINE Alu 1 150 0 1 989 824 208 60 69 chr12 52961728 52961945 -68295585 + B3 SINE B2 2 216 0 1 989 214 274 16 31 chr12 52961979 52962043 -68295487 + ID4 SINE ID 6 68 -15 1 989 615 205 34 0 chr12 52962211 52962328 -68295202 - RSINE1 SINE B4 -34 131 11 1 989 357 24 0 0 chr12 52962915 52962957 -68294573 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1 989 1034 99 0 0 chr12 52962957 52963109 -68294421 - B2_Mm2 SINE B2 -34 161 10 1 989 26 50 0 0 chr12 52963147 52963187 -68294343 + AT_rich Low_complexity Low_complexity 1 40 0 1 989 27 49 0 0 chr12 52963204 52963245 -68294285 + AT_rich Low_complexity Low_complexity 1 41 0 1 989 351 220 110 0 chr12 52963962 52964062 -68293468 + PB1D10 SINE Alu 1 111 -6 1 989 1550 154 122 91 chr12 52965452 52965880 -68291650 - RMER10A LTR ERVL 0 442 2 1 989 186 299 81 0 chr12 52966494 52966581 -68290949 - MIR SINE MIR -67 141 48 1 989 261 0 0 0 chr12 52967271 52967300 -68290230 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 989 183 42 0 0 chr12 52967907 52967931 -68289599 + (A)n Simple_repeat Simple_repeat 1 24 0 1 989 385 240 87 0 chr12 52968089 52968193 -68289337 + PB1 SINE Alu 13 125 -2 1 989 231 284 22 22 chr12 52968194 52968284 -68289246 + BC1_Mm scRNA scRNA 2 91 -61 1 989 286 294 83 56 chr12 52968384 52968564 -68288966 - L1MC3 LINE L1 -182 7603 7419 1 989 555 161 105 8 chr12 52968626 52968757 -68288773 - MTD LTR MaLR -15 404 243 1 989 480 146 29 0 chr12 52968896 52968999 -68288531 + CT-rich Low_complexity Low_complexity 2 107 0 1 989 1137 155 33 11 chr12 52968999 52969230 -68288300 - RLTR20D LTR ERVK -298 279 1 1 989 272 297 52 43 chr12 52969235 52969351 -68288179 + ORR1E LTR MaLR 139 255 -104 1 989 267 264 236 16 chr12 52969373 52969496 -68288034 + RSINE1 SINE B4 14 163 -2 1 989 1652 21 21 0 chr12 52969522 52969709 -68287821 + B2_Mm1t SINE B2 1 191 -2 1 989 701 209 36 48 chr12 52969742 52970202 -68287328 + RMER17C LTR ERVK 6 410 0 1 989 401 284 37 0 chr12 52970198 52970307 -68287223 + B1_Mus2 SINE Alu 1 113 -34 1 989 195 42 0 0 chr12 52970323 52970347 -68287183 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 989 254 186 55 41 chr12 52970468 52970541 -68286989 + B1_Mus1 SINE Alu 24 97 -51 1 989 189 0 0 0 chr12 52970547 52970568 -68286962 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 989 443 255 0 0 chr12 52970784 52970878 -68286652 - PB1D9 SINE Alu -20 100 7 1 989 614 298 6 6 chr12 52970921 52971083 -68286447 - RSINE1 SINE B4 -2 163 2 1 989 2208 156 84 113 chr12 52971125 52971674 -68285856 + RMER16 LTR ERVK 1 533 0 1 989 227 291 116 0 chr12 52971674 52971760 -68285770 + Tigger7 DNA MER2_type 2296 2391 -100 1 989 191 326 75 30 chr12 52971938 52972071 -68285459 - MIRb SINE MIR -46 222 84 1 989 587 200 43 0 chr12 52972245 52972360 -68285170 + B1_Mm SINE Alu 1 120 -27 1 989 30 0 0 0 chr12 52972372 52972402 -68285128 + AT_rich Low_complexity Low_complexity 1 30 0 1 989 270 244 0 72 chr12 52972402 52972499 -68285031 - PB1D10 SINE Alu -1 116 27 1 989 277 164 36 0 chr12 52972826 52972880 -68284650 + RSINE1 SINE B4 6 61 -104 1 989 883 235 67 67 chr12 52972880 52973236 -68284294 + RLTR15 LTR ERVK 1 356 -3 1 989 424 212 160 10 chr12 52973236 52973275 -68284255 + RSINE1 SINE B4 103 156 -9 1 989 606 200 0 9 chr12 52973336 52973452 -68284078 - B3 SINE B2 -101 115 1 1 989 277 24 23 23 chr12 52973747 52973790 -68283740 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 989 1202 29 0 0 chr12 52973792 52973932 -68283598 - B1_Mus2 SINE Alu -6 141 2 1 989 704 211 55 41 chr12 52973963 52974181 -68283349 - ID_B1 SINE B4 -3 221 1 1 989 331 206 64 48 chr12 52974189 52974300 -68283230 - B1_Mur4 SINE Alu -18 132 1 1 989 823 203 0 7 chr12 52974470 52974609 -68282921 - B1_Mus1 SINE Alu -9 139 2 1 989 976 120 0 0 chr12 52975207 52975340 -68282190 + B1_Mus1 SINE Alu 1 133 -15 1 989 768 176 71 13 chr12 52975591 52975746 -68281784 - URR1A DNA MER1_type -62 164 1 1 989 1676 140 112 6 chr12 52975941 52976279 -68281251 + ORR1C2 LTR MaLR 1 374 -10 1 989 22 0 0 0 chr12 52977169 52977191 -68280339 + AT_rich Low_complexity Low_complexity 1 22 0 1 989 867 84 23 0 chr12 52977532 52977663 -68279867 - B1_Mur4 SINE Alu -2 148 15 1 989 377 133 45 125 chr12 52977564 52977676 -68279854 - MT2B LTR ERVL -337 264 162 1 989 388 254 135 0 chr12 52977745 52977871 -68279659 - B1F1 SINE Alu -6 143 1 1 989 345 237 57 33 chr12 52978788 52978910 -68278620 - B4 SINE B4 -86 206 82 1 989 371 178 216 10 chr12 52978906 52979008 -68278522 - ID_B1 SINE B4 0 224 102 1 989 254 311 0 0 chr12 52979005 52979079 -68278451 - B4 SINE B4 -217 75 2 1 989 517 168 19 29 chr12 52979095 52979199 -68278331 - PB1D9 SINE Alu -7 113 11 1 989 269 221 12 94 chr12 52979124 52979209 -68278321 - MT2B LTR ERVL -360 241 164 1 989 1083 114 26 47 chr12 52979214 52979407 -68278123 - B2_Mm2 SINE B2 -6 189 1 1 989 226 195 133 33 chr12 52979455 52979530 -68278000 - Lx9 LINE L1 -19 7625 7539 1 989 312 27 0 0 chr12 52979530 52979567 -68277963 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 989 792 83 18 0 chr12 52979567 52979676 -68277854 - PB1D9 SINE Alu -9 111 1 1 989 226 195 133 33 chr12 52979676 52979689 -68277841 - Lx9 LINE L1 -106 7538 7528 1 989 242 75 25 0 chr12 52979732 52979772 -68277758 + B1_Mm SINE Alu 107 147 0 1 989 307 273 158 0 chr12 52979783 52979948 -68277582 - Lx9 LINE L1 -174 7470 7280 1 989 312 310 26 0 chr12 52979949 52980065 -68277465 - PB1D7 SINE Alu 0 120 2 1 989 285 29 0 0 chr12 52980772 52980806 -68276724 + (A)n Simple_repeat Simple_repeat 1 34 0 1 989 1094 52 0 0 chr12 52981237 52981371 -68276159 - B1_Mus1 SINE Alu -11 137 4 1 989 575 328 34 0 chr12 52981405 52981582 -68275948 - B3A SINE B2 -15 183 1 1 989 362 281 57 14 chr12 52981588 52981729 -68275801 - B1F2 SINE Alu 0 149 3 1 989 554 255 176 0 chr12 52981786 52981974 -68275556 - ID_B1 SINE B4 -3 221 1 1 989 981 138 27 7 chr12 52982564 52982710 -68274820 + B1_Mur4 SINE Alu 2 150 0 1 989 1185 130 48 11 chr12 52982853 52983010 -68274520 + B2_Mm2 SINE B2 1 157 -38 1 989 228 86 0 0 chr12 52983010 52983045 -68274485 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 989 1185 130 48 11 chr12 52983045 52983074 -68274456 + B2_Mm2 SINE B2 158 194 -1 1 989 569 262 99 0 chr12 52983089 52983261 -68274269 - ID_B1 SINE B4 -16 208 20 1 989 260 257 86 0 chr12 52983203 52983273 -68274257 - ID4 SINE ID -6 77 2 1 989 327 149 25 0 chr12 52983487 52983563 -68273967 + B1F SINE Alu 1 80 -47 1 989 323 286 135 0 chr12 52983563 52983611 -68273919 + ID_B1 SINE B4 94 223 -1 1 989 294 286 26 0 chr12 52984091 52984168 -68273362 + MLT1F1 LTR MaLR 299 377 -192 1 989 315 85 0 0 chr12 52984288 52984335 -68273195 + (T)n Simple_repeat Simple_repeat 1 47 0 1 989 572 234 23 0 chr12 52984335 52984463 -68273067 - ID_B1 SINE B4 0 224 94 1 989 438 125 72 39 chr12 52984968 52985071 -68272459 - B1_Mur4 SINE Alu -21 129 20 1 989 473 194 11 0 chr12 52985537 52985630 -68271900 + B3A SINE B2 2 95 -103 1 989 207 0 0 0 chr12 52985651 52985674 -68271856 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 989 1245 44 0 0 chr12 52985674 52985834 -68271696 - B2_Mm1a SINE B2 -33 160 1 1 989 351 289 26 0 chr12 52985846 52985960 -68271570 + B3 SINE B2 100 216 0 1 989 492 261 45 78 chr12 52986158 52986337 -68271193 - B4 SINE B4 -114 178 6 1 989 1122 44 7 0 chr12 52986451 52986588 -68270942 - B1_Mm SINE Alu -9 138 1 1 989 459 0 0 0 chr12 52986588 52986639 -68270891 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1 989 1190 56 0 0 chr12 52986641 52986783 -68270747 - B1_Mus1 SINE Alu -6 142 1 1 989 637 215 0 97 chr12 52986832 52986997 -68270533 - B1_Mur2 SINE Alu 0 149 1 1 989 420 270 8 50 chr12 52987024 52987145 -68270385 - PB1D10 SINE Alu -1 116 1 1 989 325 206 0 31 chr12 52987257 52987322 -68270208 - BC1_Mm scRNA scRNA -83 69 7 1 989 246 238 0 0 chr12 52987346 52987406 -68270124 - PB1 SINE Alu -8 141 75 1 989 228 67 0 0 chr12 52987419 52987449 -68270081 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 989 225 65 0 0 chr12 52987481 52987512 -68270018 + (GCTG)n Simple_repeat Simple_repeat 1 31 0 1 989 225 245 160 46 chr12 52987518 52987648 -68269882 - B4 SINE B4 -136 156 6 1 989 504 0 0 0 chr12 52988099 52988155 -68269375 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 989 466 187 73 0 chr12 52988707 52988830 -68268700 + URR1A DNA MER1_type 78 209 -17 1 989 285 222 41 20 chr12 52988836 52988983 -68268547 + (CACAG)n Simple_repeat Simple_repeat 5 154 0 1 989 243 234 146 44 chr12 52990162 52990289 -68267241 - B1_Mur2 SINE Alu -16 133 1 1 989 351 202 138 0 chr12 52990196 52990290 -68267240 - ID_B1 SINE B4 -37 187 81 1 989 306 0 0 0 chr12 52990838 52990872 -68266658 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 989 846 189 0 13 chr12 52990963 52991113 -68266417 - B1_Mus1 SINE Alu 0 148 1 1 989 1100 197 34 5 chr12 52991139 52991343 -68266187 + B3 SINE B2 2 211 -5 1 989 558 230 14 61 chr12 52991354 52991502 -68266028 - B3A SINE B2 -57 141 1 1 989 22 0 0 0 chr12 52991511 52991533 -68265997 + AT_rich Low_complexity Low_complexity 1 22 0 1 989 200 274 0 0 chr12 52991588 52991650 -68265880 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1 989 337 206 100 11 chr12 52991691 52991840 -68265690 + B3A SINE B2 3 211 -5 1 989 262 278 124 0 chr12 52991850 52991947 -68265583 + PB1D10 SINE Alu 1 109 -8 1 989 24 0 0 0 chr12 52992060 52992084 -68265446 + AT_rich Low_complexity Low_complexity 1 24 0 1 989 225 211 58 0 chr12 52992687 52992739 -68264791 - L1M5 LINE L1 -522 5642 5588 1 989 352 262 95 32 chr12 52992755 52992881 -68264649 + ID_B1 SINE B4 87 220 -4 1 989 965 111 13 0 chr12 52992926 52993079 -68264451 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 1 989 756 46 266 0 chr12 52993079 52993188 -68264342 - B1_Mus1 SINE Alu -10 138 1 1 989 408 40 0 0 chr12 52993232 52993282 -68264248 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 989 2085 194 128 64 chr12 52993406 52993844 -68263686 - RLTR18 LTR ERVK 0 616 124 1 989 423 0 0 0 chr12 52993844 52993891 -68263639 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 989 2085 194 128 64 chr12 52993891 52994030 -68263500 - RLTR18 LTR ERVK -493 123 2 1 989 23 33 0 0 chr12 52994290 52994320 -68263210 + AT_rich Low_complexity Low_complexity 1 30 0 1 989 324 303 20 0 chr12 52994921 52995020 -68262510 + PB1D10 SINE Alu 9 109 -8 1 989 507 223 79 42 chr12 52995533 52995696 -68261834 - B3 SINE B2 -8 187 27 1 989 355 143 13 25 chr12 52995696 52995775 -68261755 + CT-rich Low_complexity Low_complexity 4 81 0 1 989 1090 126 6 0 chr12 52995786 52995960 -68261570 - B2_Mm2 SINE B2 -20 175 1 1 989 680 193 58 15 chr12 52996244 52996381 -68261149 + B1_Mur1 SINE Alu 2 144 -5 1 989 277 303 0 0 chr12 52996417 52996493 -68261037 - ID4 SINE ID -3 80 5 1 989 766 141 110 7 chr12 52996551 52996687 -68260843 + B1_Mur4 SINE Alu 1 150 0 1 989 837 176 49 0 chr12 52997176 52997318 -68260212 - B1_Mur3 SINE Alu 0 149 1 1 989 387 214 0 3 chr12 52997437 52997527 -68260003 - B1F SINE Alu -10 110 23 1 989 385 213 202 0 chr12 53000755 53000849 -68256681 - PB1D9 SINE Alu -2 118 6 1 989 1033 145 0 0 chr12 53000940 53001085 -68256445 - B1_Mus2 SINE Alu 0 147 3 2 989 320 111 19 0 chr12 53001103 53001157 -68256373 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 3 989 24 0 0 0 chr12 53001165 53001189 -68256341 + AT_rich Low_complexity Low_complexity 1 24 0 4 989 760 281 112 52 chr12 53001524 53002013 -68255517 + Lx8 LINE L1 5448 5994 -1650 5 989 1214 55 5 5 chr12 53002121 53002343 -68255187 + (TG)n Simple_repeat Simple_repeat 1 222 0 6 989 418 238 50 71 chr12 53002351 53002491 -68255039 + Lx8 LINE L1 6201 6337 -1136 5 989 262 273 15 0 chr12 53002541 53002607 -68254923 + ID_B1 SINE B4 80 146 -78 7 989 419 243 199 48 chr12 53002667 53002853 -68254677 - ID_B1 SINE B4 -8 216 3 8 989 1300 41 0 7 chr12 53003013 53003161 -68254369 + B1_Mus2 SINE Alu 1 147 0 9 989 214 119 14 56 chr12 53003161 53003232 -68254298 + (CAAA)n Simple_repeat Simple_repeat 4 71 0 1 989 3216 63 0 0 chr12 53003374 53003757 -68253773 + L1Md_A LINE L1 6200 6582 0 1 989 1270 48 0 0 chr12 53003771 53003918 -68253612 + B1_Mus2 SINE Alu 1 147 0 1 989 183 156 0 0 chr12 53003918 53003950 -68253580 + A-rich Low_complexity Low_complexity 1 32 0 1 989 434 261 0 18 chr12 53004011 53004124 -68253406 - ID_B1 SINE B4 0 224 114 1 989 6676 103 45 0 chr12 53004124 53005169 -68252361 + L1_Mus4 LINE L1 4844 5938 -698 1 989 508 233 193 62 chr12 53005169 53005361 -68252169 + MT2B LTR ERVL 385 601 0 1 989 462 161 0 0 chr12 53005429 53005522 -68252008 + (CTGGGG)n Simple_repeat Simple_repeat 3 95 0 1 989 325 188 0 30 chr12 53005522 53005583 -68251947 + B1_Mm SINE Alu 40 98 -49 1 989 338 274 121 40 chr12 53005583 53005682 -68251848 + PB1D9 SINE Alu 3 109 -11 1 989 294 50 0 0 chr12 53005682 53005722 -68251808 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 989 602 295 19 58 chr12 53005725 53005754 -68251776 + B3A SINE B2 1 29 -169 2 989 1094 103 7 20 chr12 53005754 53005902 -68251628 - B1_Mus1 SINE Alu 0 148 3 2 989 602 295 19 58 chr12 53005902 53006077 -68251453 + B3A SINE B2 30 197 -1 2 989 215 301 108 14 chr12 53006768 53006842 -68250688 + RSINE1 SINE B4 56 136 -29 2 989 216 86 0 0 chr12 53006968 53007003 -68250527 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 2 989 289 259 23 58 chr12 53007125 53007211 -68250319 - PB1D10 SINE Alu -32 85 3 2 989 333 246 410 66 chr12 53007255 53007377 -68250153 - RSINE1 SINE B4 0 165 2 2 989 275 186 84 14 chr12 53007517 53007588 -68249942 - B3 SINE B2 -140 76 1 2 989 1691 32 0 5 chr12 53007699 53007886 -68249644 + B2_Mm1t SINE B2 2 187 -6 2 989 417 238 39 62 chr12 53007917 53008047 -68249483 + B3 SINE B2 5 131 -85 2 989 767 175 55 54 chr12 53008313 53008512 -68249018 - B3 SINE B2 -19 176 1 3 989 467 238 50 0 chr12 53008727 53008828 -68248702 - B1_Mur4 SINE Alu -43 107 2 3 989 280 248 35 122 chr12 53008728 53008843 -68248687 - MT2B LTR ERVL -343 258 154 3 989 21 0 0 0 chr12 53009045 53009066 -68248464 + AT_rich Low_complexity Low_complexity 1 21 0 3 989 2520 162 49 15 chr12 53009086 53009493 -68248037 - MTC LTR MaLR 0 421 1 3 989 250 356 0 0 chr12 53009788 53009861 -68247669 + ID4 SINE ID 3 75 -8 3 989 510 244 156 25 chr12 53009907 53010067 -68247463 + B3A SINE B2 1 181 -17 3 989 21 0 0 0 chr12 53010075 53010096 -68247434 + AT_rich Low_complexity Low_complexity 1 21 0 3 989 306 366 23 8 chr12 53010302 53010434 -68247096 - RSINE1 SINE B4 -25 140 7 3 989 310 333 79 7 chr12 53010501 53010640 -68246890 - MER5A DNA MER1_type -39 150 2 3 989 1337 27 0 0 chr12 53010688 53010835 -68246695 - B1_Mus1 SINE Alu 0 148 2 4 989 469 227 52 0 chr12 53011466 53011563 -68245967 + MIRb SINE MIR 34 135 -133 4 989 659 105 86 0 chr12 53011584 53011689 -68245841 - B3 SINE B2 -102 114 1 4 989 508 238 50 0 chr12 53011902 53012003 -68245527 - PB1D10 SINE Alu -7 110 5 4 989 1382 71 37 27 chr12 53013744 53013932 -68243598 - B2_Mm2 SINE B2 -5 190 1 4 989 290 271 82 153 chr12 53014946 53015116 -68242414 + RMER30 DNA MER1_type 3 160 -42 4 989 282 250 43 11 chr12 53015506 53015599 -68241931 - B4 SINE B4 -195 97 2 4 989 321 26 0 0 chr12 53016323 53016361 -68241169 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 989 416 345 41 7 chr12 53016415 53016561 -68240969 - RSINE1 SINE B4 -12 153 3 4 989 23 0 0 0 chr12 53016838 53016861 -68240669 + AT_rich Low_complexity Low_complexity 1 23 0 4 989 634 284 92 11 chr12 53017423 53017608 -68239922 - B3 SINE B2 -14 202 3 5 989 227 254 36 0 chr12 53017781 53017836 -68239694 + L1M5 LINE L1 5875 5931 -233 5 989 250 222 16 16 chr12 53017839 53017903 -68239627 + GA-rich Low_complexity Low_complexity 2 65 0 5 989 225 302 11 34 chr12 53018213 53018302 -68239228 + PB1 SINE Alu 41 127 0 5 989 332 262 18 45 chr12 53018326 53018438 -68239092 + PB1 SINE Alu 5 113 -14 5 989 281 299 16 49 chr12 53018451 53018574 -68238956 + BC1_Mm scRNA scRNA 2 120 -32 5 989 248 130 139 25 chr12 53018746 53018829 -68238701 + B1F1 SINE Alu 33 149 0 5 989 849 193 14 0 chr12 53018886 53019031 -68238499 + B1_Mur3 SINE Alu 1 147 -2 5 989 191 170 0 21 chr12 53019735 53019783 -68237747 + A-rich Low_complexity Low_complexity 6 52 0 5 989 352 296 24 0 chr12 53019950 53020075 -68237455 + (CA)n Simple_repeat Simple_repeat 1 128 0 5 989 443 229 29 0 chr12 53020238 53020343 -68237187 - PB1D9 SINE Alu -8 112 5 6 989 236 244 36 12 chr12 53020383 53020466 -68237064 + (CATA)n Simple_repeat Simple_repeat 3 87 0 6 989 263 276 87 48 chr12 53020830 53020933 -68236597 - PB1D7 SINE Alu -12 108 2 6 989 201 39 0 0 chr12 53021670 53021696 -68235834 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 6 989 1989 107 128 3 chr12 53022029 53022319 -68235211 + ORR1A3 LTR MaLR 1 326 0 6 989 225 0 0 0 chr12 53023397 53023422 -68234108 + (T)n Simple_repeat Simple_repeat 1 25 0 6 989 1343 81 11 22 chr12 53023448 53023626 -68233904 + B2_Mm2 SINE B2 1 176 -19 6 989 219 173 0 0 chr12 53023626 53023678 -68233852 + (ATG)n Simple_repeat Simple_repeat 3 54 0 6 989 427 306 32 8 chr12 53023695 53023820 -68233710 + RSINE1 SINE B4 2 129 -36 6 989 744 75 18 5 chr12 53023834 53023944 -68233586 - B1_Mus2 SINE Alu 0 147 2 6 989 597 236 18 36 chr12 53023957 53024124 -68233406 - B3A SINE B2 -5 193 30 7 989 192 40 0 0 chr12 53024177 53024202 -68233328 + (T)n Simple_repeat Simple_repeat 1 25 0 7 989 343 213 111 0 chr12 53024417 53024525 -68233005 - PB1D7 SINE Alu 0 120 1 7 989 355 265 264 22 chr12 53024619 53024850 -68232680 + B4 SINE B4 3 289 -3 7 989 637 211 23 15 chr12 53026805 53026935 -68230595 + B1_Mur4 SINE Alu 20 150 0 7 989 236 300 12 48 chr12 53026946 53027030 -68230500 + ID4_ SINE ID 3 83 0 7 989 250 303 142 35 chr12 53027033 53027146 -68230384 + PB1 SINE Alu 1 125 -2 7 989 453 263 140 39 chr12 53027317 53027653 -68229877 - L1MC5 LINE L1 -161 7800 7431 7 989 330 257 85 9 chr12 53028233 53028339 -68229191 - PB1D7 SINE Alu -5 115 2 7 989 458 143 0 0 chr12 53028423 53028493 -68229037 + B1_Mur4 SINE Alu 2 71 -79 7 989 47 67 0 0 chr12 53028494 53028583 -68228947 + AT_rich Low_complexity Low_complexity 1 89 0 8 989 381 43 0 0 chr12 53028773 53028820 -68228710 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 8 989 213 196 22 0 chr12 53028926 53028972 -68228558 - B4 SINE B4 -245 47 1 8 989 648 346 18 18 chr12 53028984 53029269 -68228261 - Lx8 LINE L1 -118 7355 7071 8 989 584 217 34 40 chr12 53029396 53029545 -68227985 - RSINE1 SINE B4 -2 163 16 8 989 420 281 8 50 chr12 53029987 53030107 -68227423 - PB1D10 SINE Alu 0 117 3 8 989 225 320 25 37 chr12 53030683 53030764 -68226766 + B1F2 SINE Alu 4 83 -66 8 989 633 277 22 0 chr12 53030865 53031002 -68226528 - B1F1 SINE Alu -8 141 2 8 989 211 279 73 0 chr12 53031434 53031502 -68226028 + ID4 SINE ID 5 77 -6 8 989 253 240 9 65 chr12 53033038 53033145 -68224385 + L1M5 LINE L1 3355 3455 -2691 8 989 271 303 170 10 chr12 53033598 53033698 -68223832 - PB1D10 SINE Alu -1 116 1 9 989 758 233 31 10 chr12 53033813 53034008 -68223522 - B3 SINE B2 -12 204 6 9 989 8519 29 6 0 chr12 53034022 53035279 -68222251 - L1Md_F2 LINE L1 -4 6578 5315 9 989 513 268 48 16 chr12 53035279 53035404 -68222126 - B1F1 SINE Alu -6 143 15 9 989 396 337 41 52 chr12 53035628 53035800 -68221730 - B4A SINE B4 -89 203 34 9 989 186 43 0 0 chr12 53036140 53036163 -68221367 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 989 621 100 0 0 chr12 53036299 53036389 -68221141 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 9 989 1194 82 0 0 chr12 53036486 53036633 -68220897 + B1_Mus2 SINE Alu 1 147 0 9 989 562 189 121 57 chr12 53037073 53037213 -68220317 - B1_Mur4 SINE Alu 0 150 2 9 989 216 0 0 0 chr12 53037240 53037264 -68220266 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 989 518 213 32 0 chr12 53037265 53037359 -68220171 - B1_Mur1 SINE Alu -13 136 40 1 989 276 239 14 43 chr12 53037297 53037367 -68220163 - MT2B LTR ERVL -344 257 190 1 989 855 296 32 25 chr12 53037544 53037828 -68219702 + MLT1A1 LTR MaLR 111 396 -12 1 989 271 253 58 0 chr12 53037832 53037919 -68219611 + L1M4 LINE L1 4957 5048 -1098 1 989 676 208 41 14 chr12 53037943 53038089 -68219441 + B1_Mur4 SINE Alu 1 150 0 1 989 27 29 0 0 chr12 53038171 53038205 -68219325 + AT_rich Low_complexity Low_complexity 1 34 0 1 989 405 230 155 26 chr12 53039375 53039491 -68218039 + B1_Mur2 SINE Alu 10 140 -9 1 989 249 33 0 0 chr12 53039697 53039727 -68217803 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 989 25 31 0 0 chr12 53039750 53039782 -68217748 + AT_rich Low_complexity Low_complexity 1 32 0 1 989 1679 32 21 0 chr12 53040130 53040318 -68217212 - B2_Mm1t SINE B2 -1 192 1 1 989 345 82 0 0 chr12 53041324 53041373 -68216157 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 989 1007 161 324 0 chr12 53041427 53041741 -68215789 + MTD LTR MaLR 5 419 0 1 989 495 240 30 0 chr12 53041741 53041841 -68215689 - B3 SINE B2 -111 105 3 1 989 519 175 107 0 chr12 53041847 53041950 -68215580 - PB1D7 SINE Alu -6 114 1 1 989 334 268 60 53 chr12 53042018 53042168 -68215362 + RSINE1 SINE B4 3 153 -12 1 989 1697 52 0 0 chr12 53042281 53042474 -68215056 - B2_Mm1t SINE B2 0 193 1 1 989 445 253 63 74 chr12 53042554 53042729 -68214801 + MIRb SINE MIR 8 180 -88 1 989 3134 45 44 21 chr12 53042836 53043222 -68214308 - MTA_Mm LTR MaLR -1 395 1 1 989 896 193 0 14 chr12 53043227 53043374 -68214156 - B1_Mur3 SINE Alu 0 149 5 1 989 254 157 107 115 chr12 53043555 53043677 -68213853 + L1MC5 LINE L1 6877 6997 -964 1 989 427 177 27 0 chr12 53043678 53043763 -68213767 - ID4 SINE ID -58 94 8 1 989 247 267 17 0 chr12 53043814 53043874 -68213656 + B4A SINE B4 1 61 -231 1 989 395 308 98 0 chr12 53043905 53044048 -68213482 + B4A SINE B4 129 285 -7 1 989 186 43 0 0 chr12 53044227 53044250 -68213280 + (TCTCCC)n Simple_repeat Simple_repeat 3 25 0 1 989 235 299 45 0 chr12 53044250 53044317 -68213213 - PB1D7 SINE Alu -5 115 46 1 989 683 291 44 78 chr12 53044461 53044626 -68212904 + B4A SINE B4 9 176 -116 1 989 369 0 0 0 chr12 53044626 53044667 -68212863 + (CCAA)n Simple_repeat Simple_repeat 2 42 0 1 989 683 291 44 78 chr12 53044667 53044795 -68212735 + B4A SINE B4 177 292 0 1 989 1113 234 14 0 chr12 53044844 53045053 -68212477 + B3 SINE B2 1 212 -4 1 989 1227 75 0 0 chr12 53045429 53045576 -68211954 + B1_Mus2 SINE Alu 1 147 0 1 989 388 172 51 64 chr12 53046160 53046274 -68211256 - PB1D9 SINE Alu -9 141 13 1 989 1162 219 0 19 chr12 53047312 53047522 -68210008 + B3 SINE B2 2 207 -9 1 989 186 43 0 0 chr12 53047524 53047547 -68209983 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 989 243 299 35 78 chr12 53047668 53047784 -68209746 - L1MC5 LINE L1 -1218 6743 6633 1 989 1299 61 0 0 chr12 53047890 53048038 -68209492 - B1_Mus1 SINE Alu 0 148 1 1 989 30 0 0 0 chr12 53048231 53048261 -68209269 + AT_rich Low_complexity Low_complexity 1 30 0 1 989 586 224 174 0 chr12 53049388 53049549 -68207981 - B3A SINE B2 -6 192 4 1 989 222 294 0 38 chr12 53050383 53050436 -68207094 - B1_Mus2 SINE Alu -95 52 2 1 989 621 124 0 0 chr12 53050517 53050614 -68206916 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 989 412 279 132 0 chr12 53050614 53050743 -68206787 - B3A SINE B2 -50 148 3 1 989 1275 203 0 0 chr12 53051308 53051510 -68206020 - B3 SINE B2 -14 202 1 1 989 275 145 109 31 chr12 53051699 53051763 -68205767 + B3A SINE B2 30 98 -100 1 989 21 0 0 0 chr12 53052786 53052807 -68204723 + AT_rich Low_complexity Low_complexity 1 21 0 1 989 1086 71 49 0 chr12 53053688 53053848 -68203682 - Lx3A LINE L1 -94 6964 6708 1 989 334 235 29 0 chr12 53054086 53054154 -68203376 + ID4_ SINE ID 2 71 -12 1 989 1590 68 18 0 chr12 53054186 53054405 -68203125 + MusHAL1 LINE L1 1881 2103 -609 1 989 216 0 0 0 chr12 53054573 53054597 -68202933 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 989 3256 132 46 0 chr12 53054951 53055449 -68202081 + RLTR28 LTR ERVL 2 522 -2 1 989 708 112 0 9 chr12 53055869 53055977 -68201553 - B1_Mur4 SINE Alu -1 149 43 1 989 312 260 0 0 chr12 53055983 53056060 -68201470 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 1 989 278 229 48 16 chr12 53056081 53056143 -68201387 - ID_B1 SINE B4 -77 147 84 1 989 389 146 0 0 chr12 53056089 53056144 -68201386 - B1_Mus1 SINE Alu -92 56 2 1 989 1091 196 10 0 chr12 53057577 53057786 -68199744 + B3 SINE B2 2 212 -4 1 989 348 24 0 0 chr12 53057797 53057838 -68199692 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 989 618 271 16 68 chr12 53058362 53058552 -68198978 - B3A SINE B2 -18 180 1 1 989 213 204 0 22 chr12 53058755 53058800 -68198730 - ID4_ SINE ID -5 78 35 1 989 1164 48 7 7 chr12 53058902 53059049 -68198481 - B1_Mm SINE Alu 0 147 1 1 989 1073 231 5 0 chr12 53059070 53059278 -68198252 - B3 SINE B2 -7 209 1 1 989 898 145 21 0 chr12 53059346 53059491 -68198039 - B1_Mus1 SINE Alu 0 148 1 1 989 783 199 20 0 chr12 53059526 53059662 -68197868 + B1_Mur1 SINE Alu 1 139 -10 1 989 378 0 0 0 chr12 53059662 53059704 -68197826 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 1 989 243 0 0 0 chr12 53060601 53060628 -68196902 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 989 690 142 58 22 chr12 53060645 53060782 -68196748 + B1_Mur3 SINE Alu 7 148 -1 1 989 901 222 67 0 chr12 53060808 53061002 -68196528 - B3 SINE B2 -9 207 1 1 989 396 200 0 0 chr12 53061635 53061720 -68195810 + (TATG)n Simple_repeat Simple_repeat 1 85 0 1 989 362 147 321 27 chr12 53061848 53061960 -68195570 - B2_Mm2 SINE B2 -4 191 47 1 989 1254 108 11 0 chr12 53062023 53062199 -68195331 - B2_Mm1t SINE B2 -14 179 2 1 989 227 54 27 0 chr12 53063224 53063261 -68194269 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 1 989 644 316 0 0 chr12 53063270 53063428 -68194102 + RSINE1 SINE B4 3 160 -5 1 989 26 0 0 0 chr12 53063431 53063457 -68194073 + AT_rich Low_complexity Low_complexity 1 26 0 1 989 275 307 58 29 chr12 53064191 53064286 -68193244 + ID_B1 SINE B4 112 211 -13 1 989 321 26 0 0 chr12 53064286 53064324 -68193206 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 1 989 530 291 76 34 chr12 53064431 53064694 -68192836 + B4A SINE B4 1 274 -18 1 989 365 315 18 9 chr12 53065517 53065626 -68191904 - PB1D10 SINE Alu -7 110 1 1 989 528 204 66 62 chr12 53065867 53066042 -68191488 - MTD-int LTR MaLR -215 1043 798 1 989 1230 0 13 7 chr12 53066042 53066193 -68191337 + (CA)n Simple_repeat Simple_repeat 1 152 0 1 989 1650 217 95 92 chr12 53066193 53066881 -68190649 - MTD-int LTR MaLR -503 1077 6 1 989 497 130 102 85 chr12 53066931 53067049 -68190481 + B1_Mur4 SINE Alu 31 150 0 1 989 670 261 128 12 chr12 53067076 53067383 -68190147 - MTD LTR MaLR -31 388 1 1 989 414 0 0 0 chr12 53067444 53067490 -68190040 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1 989 311 217 14 0 chr12 53067523 53067592 -68189938 + ID2 SINE ID 3 72 -11 1 989 4455 27 4 4 chr12 53068079 53068599 -68188931 + L1Md_F2 LINE L1 6063 6582 0 1 989 222 288 0 0 chr12 53069547 53069606 -68187924 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 1 989 265 204 217 17 chr12 53069633 53069748 -68187782 - MER46C DNA MER2_type -198 140 3 1 989 24 32 0 0 chr12 53069833 53069864 -68187666 + AT_rich Low_complexity Low_complexity 1 31 0 1 989 283 316 23 114 chr12 53071105 53071237 -68186293 - PB1D10 SINE Alu 0 120 1 1 989 278 299 69 40 chr12 53071155 53071256 -68186274 - B4A SINE B4 -118 174 71 1 989 287 200 0 0 chr12 53071282 53071332 -68186198 - MurSatRep1 Unknown Unknown -1860 277 228 1 989 548 253 49 6 chr12 53073015 53073178 -68184352 - L1MC4 LINE L1 -426 7616 7447 1 989 636 169 107 83 chr12 53073376 53073544 -68183986 - B3A SINE B2 0 198 27 1 989 448 267 58 36 chr12 53073907 53074101 -68183429 - B3 SINE B2 -5 211 2 1 989 395 254 185 17 chr12 53074274 53074506 -68183024 - L1MC4 LINE L1 -1094 6948 6678 1 989 1678 31 0 0 chr12 53074591 53074783 -68182747 + B2_Mm1a SINE B2 1 192 -1 1 989 22 0 0 0 chr12 53074804 53074826 -68182704 + AT_rich Low_complexity Low_complexity 1 22 0 1 989 1316 85 31 26 chr12 53075209 53075403 -68182127 + B2_Mm2 SINE B2 1 195 0 1 989 1074 212 18 28 chr12 53075410 53075444 -68182086 + B3 SINE B2 1 34 -182 1 989 2272 111 11 172 chr12 53075444 53075914 -68181616 + ORR1B1 LTR MaLR 1 394 0 1 989 1074 212 18 28 chr12 53075914 53076097 -68181433 + B3 SINE B2 35 216 0 1 989 809 222 131 134 chr12 53076551 53076925 -68180605 + MTE2a LTR MaLR 1 373 -6 1 989 393 58 0 0 chr12 53078292 53078344 -68179186 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 989 459 302 30 36 chr12 53078368 53078533 -68178997 + RSINE1 SINE B4 1 164 -1 1 989 426 267 37 93 chr12 53078573 53078587 -68178943 + B4 SINE B4 79 225 -62 1 989 771 162 28 0 chr12 53078587 53078729 -68178801 + B1_Mur2 SINE Alu 4 149 0 1 989 311 283 6 30 chr12 53079232 53079360 -68178170 - L1_Mur3 LINE L1 -2334 3546 3448 1 989 782 204 7 0 chr12 53079360 53079507 -68178023 - B1_Mur2 SINE Alu 0 149 2 1 989 290 283 28 131 chr12 53079507 53079630 -68177900 - L1_Mur3 LINE L1 -2430 3447 3320 1 989 441 129 0 0 chr12 53079634 53079704 -68177826 + (T)n Simple_repeat Simple_repeat 1 70 0 1 989 895 82 0 166 chr12 53079704 53079825 -68177705 - B1_Mus1 SINE Alu 0 148 56 2 989 3933 55 0 0 chr12 53079825 53080296 -68177234 - L1_Mus1 LINE L1 0 6567 6097 2 989 895 82 0 166 chr12 53080296 53080349 -68177181 - B1_Mus1 SINE Alu -93 55 3 2 989 2080 249 67 7 chr12 53080381 53080918 -68176612 - Lx8 LINE L1 -2 7471 6903 2 989 533 284 86 74 chr12 53080911 53081350 -68176180 - L1M4c LINE L1 -2329 4050 3612 2 989 381 302 67 30 chr12 53081568 53081601 -68175929 - L1MA4A LINE L1 -327 5976 5946 2 989 635 21 43 0 chr12 53081601 53081694 -68175836 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 989 381 302 67 30 chr12 53081694 53081824 -68175706 - L1MA4A LINE L1 -358 5945 5808 2 989 332 226 101 43 chr12 53081891 53082037 -68175493 - L1MA4A LINE L1 -676 5621 5433 2 989 1012 77 0 0 chr12 53082046 53082189 -68175341 - B1_Mus1 SINE Alu -1 147 5 2 989 433 278 50 25 chr12 53082195 53082392 -68175138 - L1MA4A LINE L1 -810 5487 5253 2 989 460 91 0 0 chr12 53082442 53082508 -68175022 - B1_Mus2 SINE Alu -40 107 42 2 989 593 344 38 0 chr12 53082528 53082819 -68174711 - L1M4c LINE L1 -3135 3244 2943 2 989 2477 114 135 2 chr12 53082841 53083299 -68174231 + RLTR28 LTR ERVL 1 519 -5 2 989 320 308 185 42 chr12 53083303 53083778 -68173752 - L1M4c LINE L1 -3472 2907 2365 2 989 260 345 0 0 chr12 53083985 53084101 -68173429 - L1M4c LINE L1 -4665 1719 1604 2 123 5178 141 41 22 chr12 53084124 53084999 -68172531 + Lx4B LINE L1 6163 7054 -4 2 990 244 317 111 23 chr12 53085030 53085327 -68172203 - L1M3d LINE L1 -4416 2433 2105 2 990 2326 158 36 24 chr12 53086502 53086916 -68170614 + MTC LTR MaLR 3 421 0 2 990 1009 196 64 20 chr12 53087404 53087607 -68169923 - B3 SINE B2 -4 212 1 2 990 3556 249 16 14 chr12 53088181 53088992 -68168538 - Lx7 LINE L1 -734 6962 6150 2 990 252 298 23 69 chr12 53089045 53089175 -68168355 - B4 SINE B4 -122 170 47 2 990 218 176 0 19 chr12 53089364 53089416 -68168114 + CT-rich Low_complexity Low_complexity 3 53 0 2 990 602 254 0 47 chr12 53089420 53089569 -68167961 - B1_Mur1 SINE Alu -6 143 2 2 990 478 317 41 0 chr12 53090242 53090365 -68167165 + RSINE1 SINE B4 21 148 -17 2 990 3224 157 31 34 chr12 53090379 53091021 -68166509 + RLTR26 LTR ERVK 3 642 0 2 990 276 317 12 35 chr12 53091075 53091160 -68166370 + ID4_ SINE ID 1 83 0 2 990 252 312 10 20 chr12 53091528 53091626 -68165904 - PB1D10 SINE Alu -6 111 15 2 990 255 321 18 27 chr12 53091769 53091881 -68165649 - L1ME2z LINE L1 -41 6403 6293 2 990 833 167 14 20 chr12 53092606 53092753 -68164777 - B1_Mus1 SINE Alu 0 148 3 2 990 577 243 113 13 chr12 53092758 53092961 -68164569 - B4A SINE B4 -61 231 1 2 990 398 290 101 27 chr12 53093119 53093268 -68164262 - RSINE1 SINE B4 0 165 6 2 990 234 0 0 0 chr12 53093843 53093869 -68163661 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 2 990 536 224 44 7 chr12 53094538 53094673 -68162857 - B1_Mur1 SINE Alu -9 140 1 2 990 1469 171 35 19 chr12 53095667 53095977 -68161553 + ORR1D1 LTR MaLR 2 316 -58 2 990 400 166 28 2 chr12 53096616 53096705 -68160825 + ORR1D1 LTR MaLR 294 384 0 2 990 240 35 0 0 chr12 53096826 53096855 -68160675 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 990 622 233 25 0 chr12 53096855 53096975 -68160555 - RSINE1 SINE B4 -41 124 2 2 990 442 184 310 38 chr12 53097561 53097719 -68159811 + B3 SINE B2 2 202 -14 2 990 404 278 132 0 chr12 53099001 53099152 -68158378 - B3A SINE B2 -27 171 1 2 990 509 188 50 17 chr12 53099270 53099389 -68158141 + B3A SINE B2 1 123 -75 2 990 896 157 7 13 chr12 53100202 53100351 -68157179 - B1_Mur2 SINE Alu 0 149 2 2 990 729 180 0 0 chr12 53100364 53100492 -68157038 - B1_Mur2 SINE Alu 0 149 22 2 990 373 269 68 41 chr12 53100492 53100511 -68157019 - ID_B1 SINE B4 0 224 74 2 990 3273 29 29 0 chr12 53101015 53101400 -68156130 + MTA_Mm LTR MaLR 1 396 0 2 990 345 176 0 0 chr12 53101774 53101848 -68155682 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 2 990 801 250 57 0 chr12 53101855 53102047 -68155483 + B3 SINE B2 3 205 -11 2 990 318 197 28 14 chr12 53102287 53102359 -68155171 + PB1D9 SINE Alu 22 94 -26 2 990 840 139 80 0 chr12 53103479 53103616 -68153914 - B1_Mus1 SINE Alu 0 148 1 2 990 343 231 38 88 chr12 53104062 53104192 -68153338 - PB1 SINE Alu -2 118 1 2 990 251 349 50 126 chr12 53104386 53104625 -68152905 + LTR86A1 LTR ERVL 1 221 -292 2 990 405 0 0 0 chr12 53104816 53104861 -68152669 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 990 711 208 37 12 chr12 53105094 53105255 -68152275 + B3 SINE B2 1 165 -51 2 990 296 264 0 0 chr12 53105507 53105579 -68151951 + ID4 SINE ID 2 73 -10 2 990 277 203 145 0 chr12 53105632 53105701 -68151829 + ID4 SINE ID 3 81 -2 2 990 237 279 0 0 chr12 53106678 53106739 -68150791 + MIR SINE MIR 180 240 -22 2 990 340 250 59 48 chr12 53106949 53107101 -68150429 - B3A SINE B2 -3 195 46 2 990 372 248 103 8 chr12 53107700 53107826 -68149704 - ID_B1 SINE B4 -1 223 86 2 990 573 199 89 166 chr12 53108008 53108059 -68149471 + URR1B DNA MER1_type 9 71 -154 2 990 4173 33 2 82 chr12 53108059 53108623 -68148907 + MURVY-LTR LTR ERV1 1 519 0 2 990 573 199 89 166 chr12 53108623 53108710 -68148820 + URR1B DNA MER1_type 72 155 -70 2 990 1079 87 0 0 chr12 53108710 53108848 -68148682 + B1_Mus1 SINE Alu 1 138 -10 2 990 573 199 89 166 chr12 53108848 53108943 -68148587 + URR1B DNA MER1_type 156 225 0 2 990 2232 98 3 0 chr12 53108987 53109305 -68148225 - ORR1A2 LTR MaLR -8 319 1 2 990 2775 273 92 29 chr12 53109587 53110541 -68146989 - Lx9 LINE L1 -172 7472 6459 2 990 215 29 88 0 chr12 53110602 53110636 -68146894 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 2 990 346 296 41 0 chr12 53110666 53110764 -68146766 + Lx9 LINE L1 6342 6443 -1201 2 990 23 0 0 0 chr12 53111693 53111716 -68145814 + AT_rich Low_complexity Low_complexity 1 23 0 2 990 995 177 31 67 chr12 53111979 53112203 -68145327 - ID_B1 SINE B4 -7 217 2 2 990 802 245 13 0 chr12 53112393 53112552 -68144978 + B3 SINE B2 8 168 -48 2 990 351 0 0 0 chr12 53112559 53112598 -68144932 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 990 327 104 0 0 chr12 53113506 53113554 -68143976 + (A)n Simple_repeat Simple_repeat 1 48 0 2 990 395 297 87 13 chr12 53113736 53113886 -68143644 - L4 LINE RTE -643 1386 1226 2 990 986 212 46 5 chr12 53113910 53114104 -68143426 - B3 SINE B2 -14 202 1 2 990 411 249 99 41 chr12 53114295 53114467 -68143063 - LTR33 LTR ERVL -13 502 321 2 990 227 336 165 16 chr12 53114514 53114641 -68142889 - LTR33 LTR ERVL -351 169 24 2 990 227 330 11 21 chr12 53115088 53115181 -68142349 - BC1_Mm scRNA scRNA -57 95 4 2 990 261 0 0 0 chr12 53115272 53115301 -68142229 + (T)n Simple_repeat Simple_repeat 1 29 0 2 990 202 106 0 41 chr12 53116036 53116085 -68141445 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 990 1189 72 0 0 chr12 53116207 53116346 -68141184 + B1_Mus2 SINE Alu 3 141 -6 2 990 207 0 0 0 chr12 53116348 53116371 -68141159 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 990 974 188 32 11 chr12 53116377 53116565 -68140965 + B2_Mm2 SINE B2 2 193 -2 2 990 27 73 0 0 chr12 53116794 53116849 -68140681 + AT_rich Low_complexity Low_complexity 1 55 0 2 990 1116 176 5 36 chr12 53116849 53117044 -68140486 - B3 SINE B2 -26 190 2 2 990 417 267 174 32 chr12 53117096 53117246 -68140284 - B4 SINE B4 0 292 121 2 990 576 137 21 0 chr12 53117246 53117341 -68140189 + MTD LTR MaLR 4 100 -319 2 990 327 239 86 26 chr12 53117351 53117467 -68140063 + RLTR42-int LTR ERVK 1274 1396 -4126 2 990 1291 193 14 0 chr12 53117504 53117716 -68139814 + B3 SINE B2 1 215 -1 2 990 1250 81 121 6 chr12 53117922 53118079 -68139451 + B2_Mm2 SINE B2 2 179 -16 2 990 180 0 0 0 chr12 53118079 53118099 -68139431 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 2 990 1250 81 121 6 chr12 53118099 53118114 -68139416 + B2_Mm2 SINE B2 180 194 -1 2 990 271 323 35 118 chr12 53118180 53118408 -68139122 - Lx8 LINE L1 -84 7389 7181 2 990 736 221 71 15 chr12 53119598 53119796 -68137734 - B3 SINE B2 -4 212 4 2 990 2514 105 8 11 chr12 53120388 53120745 -68136785 + ORR1B1 LTR MaLR 26 381 -13 2 990 540 263 8 8 chr12 53122092 53122211 -68135319 + B3 SINE B2 75 193 -23 2 990 301 152 0 57 chr12 53122218 53122244 -68135286 - B2_Mm1t SINE B2 -12 181 159 2 990 378 0 0 0 chr12 53122244 53122286 -68135244 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 2 990 302 93 0 0 chr12 53122286 53122329 -68135201 - B2_Mm2 SINE B2 -38 157 115 2 990 1583 34 0 22 chr12 53122341 53122523 -68135007 - B2_Mm1t SINE B2 -14 179 2 2 990 2093 101 20 81 chr12 53122523 53122869 -68134661 - ORR1A4 LTR MaLR -4 325 1 2 990 899 285 96 37 chr12 53123053 53123617 -68133913 + L1MB4 LINE L1 5584 6180 0 2 990 270 0 0 0 chr12 53123731 53123761 -68133769 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 990 440 216 184 10 chr12 53123761 53123864 -68133666 - RSINE1 SINE B4 -41 124 4 2 990 569 272 106 34 chr12 53124028 53124207 -68133323 - B3A SINE B2 -5 193 2 2 990 648 38 0 0 chr12 53125839 53125918 -68131612 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 990 454 250 0 114 chr12 53125932 53126072 -68131458 - ID_B1 SINE B4 -5 219 96 2 990 599 261 24 30 chr12 53126327 53126493 -68131037 + B4 SINE B4 127 291 -1 2 990 761 203 41 14 chr12 53126547 53126692 -68130838 + B1_Mur2 SINE Alu 1 149 0 2 990 1062 72 0 32 chr12 53127319 53127505 -68130025 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 990 404 263 29 18 chr12 53127627 53127797 -68129733 + (TG)n Simple_repeat Simple_repeat 1 172 0 2 990 905 161 14 7 chr12 53128030 53128168 -68129362 + B1_Mus2 SINE Alu 3 141 -6 2 990 198 71 0 0 chr12 53128421 53128449 -68129081 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 990 789 197 36 0 chr12 53128459 53128596 -68128934 - B1_Mus1 SINE Alu 0 148 7 3 990 241 316 38 0 chr12 53130404 53130483 -68127047 + MIRb SINE MIR 179 260 -8 3 990 884 228 20 0 chr12 53130797 53130994 -68126536 - B3 SINE B2 -1 215 15 3 990 34 0 0 0 chr12 53131524 53131558 -68125972 + AT_rich Low_complexity Low_complexity 1 34 0 3 990 771 242 21 132 chr12 53131558 53131719 -68125811 - B4A SINE B4 -70 222 79 3 990 820 151 13 46 chr12 53131719 53131872 -68125658 - B1_Mur3 SINE Alu -1 148 1 3 990 771 242 21 132 chr12 53131872 53131953 -68125577 - B4A SINE B4 -214 78 7 3 990 2764 70 9 12 chr12 53132470 53132815 -68124715 - L1_Mus2 LINE L1 0 6566 6223 3 990 1480 214 3 10 chr12 53132834 53133126 -68124404 + RLTR18B LTR ERVK 223 512 0 3 990 185 338 13 0 chr12 53133686 53133763 -68123767 - L2a LINE L2 -21 3405 3328 3 990 1148 208 153 22 chr12 53133790 53134104 -68123426 - ORR1C2 LTR MaLR 0 384 30 3 990 192 241 56 0 chr12 53134181 53134235 -68123295 - L2b LINE L2 -203 3172 3116 3 990 288 77 0 0 chr12 53134491 53134530 -68123000 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 990 468 0 0 0 chr12 53134570 53134622 -68122908 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 990 328 376 21 43 chr12 53134648 53134834 -68122696 - B4A SINE B4 -14 278 97 3 990 400 227 128 13 chr12 53134991 53135111 -68122419 - B4A SINE B4 -149 143 2 3 990 306 260 145 16 chr12 53135163 53135309 -68122221 - MLT1B LTR MaLR 0 467 230 3 990 204 296 0 0 chr12 53135342 53135386 -68122144 + polypyrimidine Low_complexity Low_complexity 1 44 0 3 990 519 207 89 75 chr12 53135386 53135532 -68121998 - RSINE1 SINE B4 -10 155 8 3 990 642 228 25 100 chr12 53135554 53135793 -68121737 - MLT1B LTR MaLR -169 221 1 3 990 531 0 0 0 chr12 53136209 53136268 -68121262 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 990 3280 131 27 16 chr12 53136360 53136917 -68120613 - RMER4B LTR ERVK -58 527 1 3 990 1878 132 72 76 chr12 53137063 53137427 -68120103 - ORR1B1 LTR MaLR -8 386 1 3 990 273 302 65 19 chr12 53137765 53137873 -68119657 - MER81 DNA AcHobo -1 113 1 3 990 1422 191 169 27 chr12 53138160 53138527 -68119003 + MTD LTR MaLR 1 419 0 3 990 907 212 105 11 chr12 53139042 53139233 -68118297 - B3 SINE B2 -7 209 1 3 990 5705 58 1 3 chr12 53139900 53140576 -68116954 - L1_Mus1 LINE L1 0 6567 5893 3 990 635 197 122 30 chr12 53140747 53140878 -68116652 - B1_Mur3 SINE Alu -1 148 6 3 990 410 212 87 39 chr12 53140794 53140897 -68116633 - MT2B LTR ERVL -343 258 151 3 990 1197 270 35 19 chr12 53140946 53141256 -68116274 - MTEb LTR MaLR -64 315 1 3 990 427 241 133 14 chr12 53141269 53141412 -68116118 - MTEb-int LTR MaLR -3 1577 1418 3 990 554 237 35 41 chr12 53141557 53141702 -68115828 + RSINE1 SINE B4 3 146 -19 3 990 303 293 199 37 chr12 53141711 53141927 -68115603 + MLT2B4 LTR ERVL 305 555 -1 3 990 707 238 15 11 chr12 53142212 53142368 -68115162 - ID_B1 SINE B4 -42 250 86 3 990 27 49 0 0 chr12 53142374 53142415 -68115115 + AT_rich Low_complexity Low_complexity 1 41 0 3 990 424 316 43 7 chr12 53142458 53142598 -68114932 - ID_B1 SINE B4 0 224 80 3 990 311 284 0 29 chr12 53142654 53142723 -68114807 - ID4 SINE ID -2 81 15 3 990 316 230 18 9 chr12 53142756 53142870 -68114660 + C-rich Low_complexity Low_complexity 3 117 0 3 990 216 86 0 0 chr12 53143024 53143059 -68114471 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 990 765 76 0 0 chr12 53143294 53143412 -68114118 + (TCCC)n Simple_repeat Simple_repeat 1 118 0 3 990 4446 145 125 78 chr12 53143694 53144555 -68112975 - RMER19B LTR ERVK 0 902 1 3 990 253 228 17 17 chr12 53144800 53144858 -68112672 - ID4 SINE ID -25 58 1 3 990 821 322 65 8 chr12 53144881 53145235 -68112295 - Lx8 LINE L1 -131 7342 6969 3 990 904 185 45 56 chr12 53145240 53145544 -68111986 + RMER6A LTR ERVK 415 754 -2 3 990 26 50 0 0 chr12 53145871 53145911 -68111619 + AT_rich Low_complexity Low_complexity 1 40 0 3 990 299 348 0 0 chr12 53147954 53148023 -68109507 + BC1_Mm scRNA scRNA 3 71 -81 3 990 271 302 83 11 chr12 53148114 53148295 -68109235 - L1M5 LINE L1 -364 5760 5567 3 990 240 360 97 60 chr12 53148309 53148628 -68108902 - L2b LINE L2 0 3375 3045 3 990 189 0 0 0 chr12 53148741 53148762 -68108768 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 990 800 225 0 0 chr12 53148763 53148901 -68108629 - B1_Mur2 SINE Alu -10 139 2 3 990 224 254 73 0 chr12 53148935 53148990 -68108540 - PB1D10 SINE Alu -22 95 37 3 990 2422 270 79 44 chr12 53150761 53151909 -68105621 + L1_Mur3 LINE L1 2347 3535 -2345 3 990 1978 158 53 6 chr12 53151951 53152308 -68105222 + ORR1D1 LTR MaLR 1 374 0 3 990 340 267 2 12 chr12 53152359 53152481 -68105049 + L1_Mur3 LINE L1 3658 3779 -2364 3 990 1635 151 174 6 chr12 53152541 53152874 -68104656 - MTC LTR MaLR -14 407 19 3 990 207 0 0 0 chr12 53152877 53152900 -68104630 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 990 1011 247 28 31 chr12 53152979 53153267 -68104263 + L1_Mur3 LINE L1 4573 4859 -1284 3 990 274 290 14 0 chr12 53153298 53153367 -68104163 - ID4_ SINE ID -13 70 1 3 990 303 332 75 52 chr12 53153368 53153581 -68103949 - Lx8 LINE L1 -8 7465 7248 3 990 1028 281 60 16 chr12 53153586 53153955 -68103575 + Lx8 LINE L1 4791 5175 -672 3 990 388 186 30 53 chr12 53153956 53154087 -68103443 - MT2A LTR ERVL 0 533 406 3 990 747 197 132 0 chr12 53154087 53154239 -68103291 - MT2A LTR ERVL -290 243 72 3 990 1636 254 119 16 chr12 53154260 53154936 -68102594 + Lx8 LINE L1 5239 5992 -1652 3 990 396 0 0 0 chr12 53154936 53154980 -68102550 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 990 682 299 120 23 chr12 53154980 53155000 -68102530 + Lx8 LINE L1 5993 6010 -1634 3 990 301 296 0 0 chr12 53155027 53155108 -68102422 + Lx8 LINE L1 7034 7114 -359 3 990 254 213 21 0 chr12 53155345 53155392 -68102138 - PB1D10 SINE Alu -12 105 58 3 990 369 0 0 0 chr12 53155432 53155473 -68102057 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 3 990 429 301 25 8 chr12 53155494 53155692 -68101838 - L1M4 LINE L1 -1793 4353 4147 3 990 360 277 43 0 chr12 53155749 53155843 -68101687 - PB1D10 SINE Alu -17 100 3 3 990 382 284 17 41 chr12 53155857 53155974 -68101556 - B1F SINE Alu -7 120 3 3 990 283 303 0 11 chr12 53155995 53156085 -68101445 - L1M4 LINE L1 -2060 4086 3998 3 990 239 284 57 0 chr12 53156252 53156340 -68101190 + MamGypLTR1c LTR Gypsy 698 790 -13 3 990 474 311 44 7 chr12 53156881 53157017 -68100513 - ID_B1 SINE B4 0 224 84 3 990 250 296 25 42 chr12 53157503 53157623 -68099907 + RMER1C Other Other 23 140 -1202 3 990 2228 216 59 4 chr12 53157663 53158156 -68099374 + RMER1C Other Other 823 1342 0 3 990 3574 209 45 50 chr12 53158156 53159036 -68098494 + MTD-int LTR MaLR 380 1255 -3 3 990 1934 219 17 7 chr12 53159039 53159448 -68098082 + MTD LTR MaLR 1 413 -6 3 990 252 0 0 0 chr12 53159596 53159624 -68097906 + (A)n Simple_repeat Simple_repeat 1 28 0 3 990 1292 35 0 0 chr12 53159624 53159768 -68097762 + B1_Mm SINE Alu 1 144 -3 3 990 880 9 18 0 chr12 53159768 53159877 -68097653 + (GA)n Simple_repeat Simple_repeat 2 112 0 3 990 340 306 149 6 chr12 53160488 53160669 -68096861 - HAL1 LINE L1 -773 1734 1528 3 990 278 281 112 17 chr12 53160675 53160791 -68096739 - PB1 SINE Alu 0 127 1 3 990 1365 259 52 6 chr12 53161559 53161885 -68095645 + MTE2b LTR MaLR 1 341 -38 3 990 709 294 67 67 chr12 53162168 53162525 -68095005 - MER63B DNA AcHobo -5 431 75 3 990 351 0 0 0 chr12 53162626 53162665 -68094865 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 990 330 26 0 0 chr12 53162665 53162704 -68094826 + (TTC)n Simple_repeat Simple_repeat 2 40 0 3 990 8018 54 19 11 chr12 53162745 53164482 -68093048 - L1Md_F2 LINE L1 0 6582 4834 3 990 261 0 0 0 chr12 53164642 53164671 -68092859 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 990 516 32 0 0 chr12 53164671 53164732 -68092798 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 990 875 243 14 32 chr12 53164734 53164951 -68092579 - ORR1D1 LTR MaLR -159 215 3 3 990 278 343 183 17 chr12 53164965 53165140 -68092390 - ORR1E LTR MaLR -124 235 32 3 990 241 302 176 0 chr12 53165415 53165534 -68091996 - HAL1 LINE L1 -2365 142 3 3 990 970 298 98 2 chr12 53165717 53165827 -68091703 - L1MC3 LINE L1 -34 7751 7621 3 990 180 0 0 0 chr12 53165827 53165847 -68091683 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 3 990 970 298 98 2 chr12 53165847 53166143 -68091387 - L1MC3 LINE L1 -165 7620 7307 3 990 230 245 182 61 chr12 53166422 53166587 -68090943 + ORR1E LTR MaLR 45 229 -130 3 990 271 378 46 53 chr12 53166742 53166893 -68090637 - MER21B LTR ERV1 -396 467 318 3 990 706 221 128 23 chr12 53167229 53167447 -68090083 - L1MC3 LINE L1 -492 7293 7053 3 990 369 0 0 0 chr12 53167449 53167490 -68090040 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 3 990 724 240 21 105 chr12 53167567 53167758 -68089772 - B3 SINE B2 -40 176 2 3 990 651 13 0 0 chr12 53168479 53168555 -68088975 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 990 369 0 0 0 chr12 53168556 53168597 -68088933 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 990 419 251 81 12 chr12 53168713 53168886 -68088644 - L1ME2z LINE L1 -86 6358 6174 3 990 633 295 128 47 chr12 53168991 53169546 -68087984 - L1ME2z LINE L1 -493 5951 5352 3 990 569 238 41 8 chr12 53169572 53169695 -68087835 + RSINE1 SINE B4 3 129 -36 3 990 1017 25 0 0 chr12 53169732 53169852 -68087678 + (TC)n Simple_repeat Simple_repeat 1 120 0 3 990 2237 111 55 28 chr12 53169853 53170252 -68087278 - RMER6A LTR ERVK -343 413 4 3 990 694 197 134 0 chr12 53170377 53170504 -68087026 + B1_Mur2 SINE Alu 2 145 -4 3 990 2098 268 79 25 chr12 53170630 53171140 -68086390 - L1MA6 LINE L1 -129 6171 5618 3 990 2437 175 22 5 chr12 53171140 53171554 -68085976 - MTC LTR MaLR 0 421 1 3 990 2098 250 76 23 chr12 53171554 53171868 -68085662 - L1MA6 LINE L1 -683 5617 5294 3 990 1585 132 0 12 chr12 53171906 53172152 -68085378 - RLTR19 LTR ERVK -256 243 1 3 990 1403 254 61 92 chr12 53172157 53172266 -68085264 + MT2A LTR ERVL 1 88 -445 3 990 4283 139 37 18 chr12 53172266 53172949 -68084581 - Lx3C LINE L1 -2 6974 6279 3 990 1403 254 61 92 chr12 53172949 53173316 -68084214 + MT2A LTR ERVL 89 462 -71 3 990 241 351 71 18 chr12 53173329 53173442 -68084088 - PB1D7 SINE Alu 0 120 2 3 990 287 301 59 24 chr12 53173363 53173448 -68084082 - ID_B1 SINE B4 -58 166 79 4 990 450 36 0 0 chr12 53173457 53173513 -68084017 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 990 1905 209 15 110 chr12 53173539 53174001 -68083529 + MTD LTR MaLR 2 419 0 4 990 426 226 286 16 chr12 53174207 53174459 -68083071 - L1MA6 LINE L1 -837 5306 4987 3 990 413 298 0 140 chr12 53174466 53174630 -68082900 - ID_B1 SINE B4 -3 221 81 4 990 545 267 47 0 chr12 53174632 53174782 -68082748 - L1MA6 LINE L1 -1155 4988 4832 3 990 22 0 0 0 chr12 53175406 53175428 -68082102 + AT_rich Low_complexity Low_complexity 1 22 0 4 990 800 320 69 14 chr12 53176119 53176395 -68081135 + B4A SINE B4 2 292 0 4 990 471 35 0 0 chr12 53176413 53176470 -68081060 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 990 378 0 0 0 chr12 53176471 53176513 -68081017 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 990 26 50 0 0 chr12 53176715 53176755 -68080775 + AT_rich Low_complexity Low_complexity 1 40 0 4 990 21 57 0 0 chr12 53177024 53177059 -68080471 + AT_rich Low_complexity Low_complexity 1 35 0 4 990 989 211 32 46 chr12 53177100 53177319 -68080211 - B3 SINE B2 0 216 1 4 990 229 214 0 51 chr12 53177526 53177585 -68079945 - MTB_Mm LTR MaLR -43 364 309 4 990 3691 110 33 14 chr12 53177761 53178333 -68079197 + Lx2 LINE L1 5791 6373 -624 4 990 8052 73 1 3 chr12 53178324 53179740 -68077790 + L1_Mus1 LINE L1 5154 6567 0 4 990 294 29 0 0 chr12 53180611 53180646 -68076884 + (A)n Simple_repeat Simple_repeat 1 35 0 4 990 324 0 0 0 chr12 53180720 53180756 -68076774 + (A)n Simple_repeat Simple_repeat 1 36 0 4 990 4353 113 25 0 chr12 53180756 53181355 -68076175 + Lx2 LINE L1 6370 6983 -14 4 990 2070 139 53 22 chr12 53181438 53181624 -68075906 - ORR1C2 LTR MaLR 0 384 197 4 990 333 0 0 0 chr12 53181624 53181661 -68075869 + (CAGG)n Simple_repeat Simple_repeat 4 40 0 4 990 2070 139 53 22 chr12 53181661 53181835 -68075695 - ORR1C2 LTR MaLR -188 196 14 4 990 195 69 0 0 chr12 53181835 53181864 -68075666 + (T)n Simple_repeat Simple_repeat 1 29 0 4 990 37356 9 0 0 chr12 53181871 53186739 -68070791 - L1Md_A LINE L1 0 6582 1713 4 990 9149 6 0 1 chr12 53186725 53187894 -68069636 - L1Md_T LINE L1 0 6582 5415 4 990 7662 13 4 27 chr12 53187879 53189251 -68068279 - L1Md_A LINE L1 -4118 1765 431 4 990 952 273 77 77 chr12 53189286 53189816 -68067714 - MLT1E1 LTR MaLR -1 653 9 4 990 933 79 0 0 chr12 53191114 53191254 -68066276 + (TG)n Simple_repeat Simple_repeat 1 140 0 4 990 564 222 0 18 chr12 53192699 53192809 -68064721 - ID_B1 SINE B4 0 224 117 4 990 4028 53 15 0 chr12 53192985 53193456 -68064074 - L1Md_F3 LINE L1 -14 6570 6093 4 990 22 0 0 0 chr12 53193632 53193654 -68063876 + AT_rich Low_complexity Low_complexity 1 22 0 4 990 329 309 51 81 chr12 53194224 53194421 -68063109 + RMER15 LTR ERVL 361 551 -24 4 990 297 0 0 0 chr12 53195120 53195153 -68062377 + (T)n Simple_repeat Simple_repeat 1 33 0 4 990 694 144 102 0 chr12 53195977 53196095 -68061435 + B1_Mus1 SINE Alu 6 135 -13 4 990 414 0 48 16 chr12 53196095 53196157 -68061373 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 4 990 1865 184 122 42 chr12 53196289 53196940 -68060590 - Lx5 LINE L1 -32 7018 5767 4 990 281 283 0 0 chr12 53197942 53198002 -68059528 - tRNA-Ala-GCY_ tRNA tRNA -8 67 8 4 990 289 257 14 0 chr12 53198403 53198473 -68059057 + ID4_ SINE ID 2 72 -11 4 990 186 43 0 0 chr12 53199085 53199108 -68058422 + (T)n Simple_repeat Simple_repeat 1 23 0 4 990 249 197 115 0 chr12 53199976 53200037 -68057493 - B4A SINE B4 -9 283 216 4 990 274 219 78 0 chr12 53200095 53200159 -68057371 - B4A SINE B4 -217 75 7 4 990 243 283 101 28 chr12 53200591 53200700 -68056830 - MIRb SINE MIR -35 233 117 4 990 246 296 60 24 chr12 53200754 53200837 -68056693 - MIR SINE MIR -169 93 8 4 990 284 336 95 44 chr12 53201769 53201906 -68055624 - B1F SINE Alu -5 144 1 4 990 377 225 214 12 chr12 53202165 53202315 -68055215 - B3A SINE B2 -43 173 1 4 990 351 279 0 0 chr12 53202600 53202775 -68054755 + A-rich Low_complexity Low_complexity 1 175 0 4 990 3558 228 100 48 chr12 53202779 53203696 -68053834 - Lx7 LINE L1 -421 7275 6307 4 990 297 0 0 0 chr12 53203696 53203729 -68053801 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 990 3558 228 100 48 chr12 53203729 53203880 -68053650 - Lx7 LINE L1 -1390 6306 6151 4 990 358 202 12 25 chr12 53203881 53203962 -68053568 - ID4_ SINE ID 0 83 4 4 990 213 247 136 49 chr12 53204035 53204116 -68053414 - RSINE1 SINE B4 0 165 78 4 990 213 196 0 0 chr12 53204136 53204187 -68053343 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 990 509 289 70 76 chr12 53204242 53204414 -68053116 - B4A SINE B4 -120 172 2 4 990 391 280 73 41 chr12 53205597 53205820 -68051710 - L1M6 LINE L1 -897 1864 1508 4 990 273 219 62 0 chr12 53206238 53206302 -68051228 + MER5A1 DNA MER1_type 27 94 -72 4 990 414 0 0 0 chr12 53206587 53206633 -68050897 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 990 394 247 12 12 chr12 53206641 53206727 -68050803 - PB1D10 SINE Alu -22 95 10 4 990 237 180 0 0 chr12 53206755 53206805 -68050725 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 990 837 229 59 15 chr12 53207006 53207210 -68050320 - B3 SINE B2 -3 213 1 4 990 248 309 0 12 chr12 53207453 53207535 -68049995 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 4 990 307 300 12 0 chr12 53207551 53207631 -68049899 - ID4_ SINE ID -1 82 2 4 990 233 284 26 39 chr12 53208132 53208209 -68049321 - L2c LINE L2 -31 3356 3281 4 990 1076 168 101 38 chr12 53208725 53209027 -68048503 + IAPEY3_LTR LTR ERVK 1 385 -5 4 990 305 300 28 41 chr12 53209670 53209810 -68047720 - MIR SINE MIR -108 168 28 4 990 469 292 170 18 chr12 53209846 53210017 -68047513 + B3A SINE B2 2 198 0 4 990 287 294 8 84 chr12 53210061 53210180 -68047350 + PB1D9 SINE Alu 9 118 -2 4 990 636 102 0 0 chr12 53210182 53210280 -68047250 + (CCAA)n Simple_repeat Simple_repeat 2 99 0 4 990 255 256 93 47 chr12 53210507 53210593 -68046937 + MTE2b LTR MaLR 1 90 -289 4 990 252 282 0 0 chr12 53210716 53210794 -68046736 + MIRb SINE MIR 185 262 0 4 123 38821 30 0 0 chr12 53210794 53217436 -68040094 - L1Md_T LINE L1 0 6585 1 4 991 579 214 14 71 chr12 53217816 53217957 -68039573 + ID_B1 SINE B4 84 216 -8 4 991 195 352 19 0 chr12 53218137 53218191 -68039339 + MIRb SINE MIR 191 245 -23 4 991 1336 74 0 0 chr12 53218375 53218550 -68038980 - B2_Mm2 SINE B2 -19 176 2 4 991 429 294 18 9 chr12 53219184 53219294 -68038236 - PB1D10 SINE Alu -6 111 1 4 991 3343 184 89 7 chr12 53219512 53220218 -68037312 - Lx2B LINE L1 -5 6995 6232 4 991 261 83 0 0 chr12 53220386 53220422 -68037108 + (TCC)n Simple_repeat Simple_repeat 2 37 0 4 991 754 329 153 75 chr12 53220553 53221021 -68036509 - MLT1G LTR MaLR -31 564 21 4 991 230 308 0 19 chr12 53221145 53221198 -68036332 + B1F2 SINE Alu 4 55 -94 4 991 262 336 44 59 chr12 53223621 53223757 -68033773 - L2c LINE L2 0 3387 3254 4 991 7350 92 11 6 chr12 53223759 53225125 -68032405 - Lx LINE L1 -20 6634 5261 4 991 307 296 166 11 chr12 53225404 53225585 -68031945 - L2c LINE L2 -534 2885 2677 4 991 852 219 130 23 chr12 53225694 53225993 -68031537 - L1MB3 LINE L1 -10 6173 5843 4 991 361 344 129 13 chr12 53226013 53226237 -68031293 - L2c LINE L2 -864 2555 2306 4 991 216 0 0 0 chr12 53226403 53226427 -68031103 + (TTA)n Simple_repeat Simple_repeat 1 24 0 4 991 1382 89 16 0 chr12 53226441 53226632 -68030898 - B2_Mm2 SINE B2 0 195 2 4 991 514 244 22 51 chr12 53228217 53228355 -68029175 - B1F2 SINE Alu -1 148 15 4 991 568 186 12 37 chr12 53228434 53228596 -68028934 + Lx7 LINE L1 7536 7693 -3 4 991 195 0 0 79 chr12 53228598 53228636 -68028894 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 991 1523 192 72 47 chr12 53228917 53229277 -68028253 + ORR1D1 LTR MaLR 5 373 -1 4 991 262 229 57 114 chr12 53229601 53229724 -68027806 - MER5A1 DNA MER1_type -22 144 29 4 991 289 359 15 8 chr12 53229736 53229868 -68027662 + MIRb SINE MIR 19 151 -117 4 991 1141 62 14 0 chr12 53229875 53230020 -68027510 + B1_Mus2 SINE Alu 1 147 0 4 991 213 299 158 43 chr12 53230751 53230915 -68026615 + MIR SINE MIR 7 189 -73 4 991 2450 261 83 16 chr12 53230923 53231404 -68026126 + Lx8 LINE L1 6337 6848 -625 4 991 183 42 0 0 chr12 53231404 53231428 -68026102 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 991 2450 261 83 16 chr12 53231428 53231744 -68025786 + Lx8 LINE L1 6849 7186 -287 4 991 398 175 162 0 chr12 53231819 53231899 -68025631 - B1F2 SINE Alu -5 144 52 4 991 399 264 77 0 chr12 53231953 53232044 -68025486 - RSINE1 SINE B4 -12 153 56 4 991 236 207 0 108 chr12 53232449 53232514 -68025016 - B3 SINE B2 -13 203 146 4 991 746 278 45 35 chr12 53232579 53232780 -68024750 - B3 SINE B2 -13 203 1 4 991 231 61 0 0 chr12 53234376 53234409 -68023121 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 4 991 364 232 75 40 chr12 53234859 53234966 -68022564 - PB1D10 SINE Alu -1 116 9 4 991 4626 201 87 27 chr12 53235069 53235819 -68021711 + RMER12 LTR ERVK 1 762 -560 4 991 234 0 0 0 chr12 53235819 53235845 -68021685 + (TCCA)n Simple_repeat Simple_repeat 1 26 0 4 991 4626 201 87 27 chr12 53235845 53236220 -68021310 + RMER12 LTR ERVK 763 1193 -129 4 991 310 294 108 98 chr12 53236271 53236475 -68021055 + RMER12 LTR ERVK 1117 1322 0 4 991 540 219 29 0 chr12 53236479 53236584 -68020946 - B1F1 SINE Alu -40 109 2 4 991 180 269 57 114 chr12 53236667 53236755 -68020775 - MIR3 SINE MIR 0 208 126 4 991 233 301 66 116 chr12 53236985 53237257 -68020273 - L2 LINE L2 -340 3079 2820 4 991 387 0 0 0 chr12 53237257 53237300 -68020230 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 4 991 1045 53 23 0 chr12 53237301 53237433 -68020097 - B1_Mus2 SINE Alu -12 135 1 4 991 233 301 66 116 chr12 53237433 53237477 -68020053 - L2 LINE L2 -600 2819 2777 4 991 1237 254 42 28 chr12 53237536 53237897 -68019633 - MTE2b LTR MaLR -13 366 1 4 991 458 264 45 37 chr12 53238030 53238164 -68019366 + B1F SINE Alu 14 148 -1 5 991 372 342 99 46 chr12 53238420 53238834 -68018696 - L2a LINE L2 -39 3387 2952 5 991 21 0 0 0 chr12 53240173 53240194 -68017336 + AT_rich Low_complexity Low_complexity 1 21 0 5 991 635 224 106 0 chr12 53240304 53240474 -68017056 + MTD LTR MaLR 143 330 -89 5 991 2787 181 70 7 chr12 53240477 53241095 -68016435 + Lx9 LINE L1 6968 7624 -20 5 991 237 180 0 0 chr12 53241246 53241296 -68016234 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 991 455 340 13 7 chr12 53241296 53241447 -68016083 + MER58B DNA MER1_type 177 328 -13 5 991 22 0 0 0 chr12 53241461 53241483 -68016047 + AT_rich Low_complexity Low_complexity 1 22 0 5 991 303 210 46 46 chr12 53243617 53243792 -68013738 + (CAGTG)n Simple_repeat Simple_repeat 3 177 0 5 991 255 223 46 46 chr12 53243895 53244069 -68013461 + (CAGTG)n Simple_repeat Simple_repeat 3 176 0 5 991 340 178 53 47 chr12 53244083 53244254 -68013276 + (CAGTG)n Simple_repeat Simple_repeat 2 173 0 5 991 3683 152 66 35 chr12 53245132 53245952 -68011578 - RLTR13D2 LTR ERVK 0 1023 1 5 991 187 167 88 53 chr12 53247389 53247446 -68010084 - MIRc SINE MIR -69 199 141 5 991 2344 210 152 34 chr12 53247617 53248237 -68009293 - Lx6 LINE L1 -11 7449 6757 5 991 879 216 74 0 chr12 53248247 53248629 -68008901 - L1_Mur2 LINE L1 -4433 1447 1087 5 991 324 0 0 0 chr12 53248965 53249001 -68008529 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 991 672 311 96 8 chr12 53249013 53249263 -68008267 - B4A SINE B4 -18 274 3 5 991 953 153 229 0 chr12 53250318 53250501 -68007029 + URR1A DNA MER1_type 2 226 0 5 991 301 188 24 0 chr12 53251267 53251352 -68006178 + GA-rich Low_complexity Low_complexity 1 87 0 5 991 193 310 6 12 chr12 53251837 53252007 -68005523 + (CCA)n Simple_repeat Simple_repeat 3 171 0 5 991 784 166 14 7 chr12 53252564 53252704 -68004826 + RLTR23 LTR ERV1 290 430 0 5 991 479 259 113 34 chr12 53252778 53252956 -68004574 - MTEb LTR MaLR -156 223 53 5 991 1605 171 54 82 chr12 53253022 53253411 -68004119 - ORR1B1 LTR MaLR 0 394 17 5 991 671 189 0 8 chr12 53253425 53253553 -68003977 - B1_Mur1 SINE Alu -1 148 22 5 991 298 322 44 101 chr12 53253564 53253723 -68003807 + LTR16E2 LTR ERVL 48 197 -371 5 991 1425 40 0 0 chr12 53253900 53254077 -68003453 + L1_Mus1 LINE L1 6182 6358 -209 5 991 246 116 0 0 chr12 53254131 53254174 -68003356 + (T)n Simple_repeat Simple_repeat 1 43 0 5 991 357 187 0 0 chr12 53254178 53254253 -68003277 + GA-rich Low_complexity Low_complexity 4 78 0 5 991 711 342 60 32 chr12 53254257 53254541 -68002989 - B4A SINE B4 0 292 1 5 991 455 314 12 12 chr12 53255223 53255384 -68002146 - RSINE1 SINE B4 0 165 5 5 991 1573 268 93 39 chr12 53255393 53256081 -68001449 - Charlie1a DNA MER1_type -602 853 129 5 991 205 315 121 20 chr12 53257383 53257532 -67999998 - L3 LINE CR1 -226 4263 4100 5 991 314 261 162 0 chr12 53257873 53257984 -67999546 + RMER10B LTR ERVL 208 336 -62 5 991 450 0 0 0 chr12 53257984 53258034 -67999496 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 5 991 507 247 187 5 chr12 53258067 53258254 -67999276 - ID_B1 SINE B4 -3 221 1 5 991 302 387 77 55 chr12 53258303 53258538 -67998992 - MLT1J LTR MaLR 0 512 273 5 991 38495 18 0 6 chr12 53258882 53265060 -67992470 - L1Md_T LINE L1 0 6582 449 5 991 281 27 0 0 chr12 53265084 53265121 -67992409 - L1Md_T LINE L1 -6663 61 25 5 991 1023 239 78 123 chr12 53265195 53265592 -67991938 + MTE2a LTR MaLR 1 379 0 5 991 342 0 0 0 chr12 53265728 53265766 -67991764 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 991 452 238 84 43 chr12 53266227 53266484 -67991046 + L1MA8 LINE L1 5217 5486 -826 5 991 265 324 39 10 chr12 53266486 53266589 -67990941 + PB1D10 SINE Alu 12 117 0 5 991 1424 289 58 35 chr12 53266621 53267385 -67990145 + L1MA8 LINE L1 5495 6275 -16 5 991 28 0 0 0 chr12 53267482 53267510 -67990020 + AT_rich Low_complexity Low_complexity 1 28 0 5 991 2269 121 67 8 chr12 53268681 53269038 -67988492 + ORR1C1 LTR MaLR 1 378 0 5 991 304 283 9 92 chr12 53269064 53269173 -67988357 + RSINE1 SINE B4 17 116 -49 5 991 521 125 247 10 chr12 53269259 53269356 -67988174 - B1_Mus1 SINE Alu -8 140 21 5 991 2302 126 28 6 chr12 53269357 53269716 -67987814 - ORR1B2 LTR MaLR 0 367 1 5 991 7207 175 55 15 chr12 53269716 53271147 -67986383 - ORR1B2-int LTR MaLR 0 1509 23 5 991 24 0 0 0 chr12 53271166 53271190 -67986340 + AT_rich Low_complexity Low_complexity 1 24 0 5 991 614 303 27 10 chr12 53271652 53271949 -67985581 - L1M2 LINE L1 -855 5288 4987 5 991 653 237 26 0 chr12 53272222 53272378 -67985152 - Lx9 LINE L1 -663 6981 6822 5 991 1268 206 45 91 chr12 53272384 53272833 -67984697 - L1_Rod LINE L1 -255 5592 5165 5 991 3109 244 61 7 chr12 53272832 53273656 -67983874 - Lx6 LINE L1 -421 7039 6172 5 991 3103 84 51 2 chr12 53273657 53274110 -67983420 - IAPLTR2_Mm LTR ERVK 0 475 1 5 991 13555 53 9 3 chr12 53274112 53275873 -67981657 - IAPEz-int LTR ERVK -2 6479 4708 5 991 1780 95 8 0 chr12 53275900 53276152 -67981378 - IAPEz-int LTR ERVK -5183 2497 2244 5 991 910 59 0 0 chr12 53276147 53276266 -67981264 - IAPEz-int LTR ERVK -5004 1477 1359 5 991 3440 80 14 20 chr12 53276266 53277174 -67980356 - IAPEz-int LTR ERVK -5819 662 9 5 991 3012 88 50 19 chr12 53277175 53277636 -67979894 - IAPLTR2_Mm LTR ERVK 0 475 1 5 991 5709 181 44 14 chr12 53277636 53279101 -67978429 - Lx6 LINE L1 -1286 6174 4665 5 991 546 132 19 0 chr12 53279102 53279208 -67978322 + Lx6 LINE L1 4562 4669 -1208 5 991 302 211 0 14 chr12 53279214 53279286 -67978244 - L1_Rod LINE L1 -3234 2613 2543 5 991 1768 212 100 34 chr12 53279296 53279946 -67977584 - L1_Rod LINE L1 -3893 1954 1262 5 991 1087 37 0 0 chr12 53279983 53280119 -67977411 - B1_Mm SINE Alu 0 147 12 5 991 665 235 45 34 chr12 53280119 53280159 -67977371 - ID_B1 SINE B4 0 224 47 5 991 1247 252 54 26 chr12 53280159 53280587 -67976943 - L1_Rod LINE L1 -6389 1219 780 5 991 3196 63 2 2 chr12 53281069 53281465 -67976065 - MTA_Mm LTR MaLR 0 396 1 5 991 663 271 235 0 chr12 53281468 53281774 -67975756 - MTEb LTR MaLR 0 379 2 5 991 405 203 192 5 chr12 53281831 53282022 -67975508 + L1MA8 LINE L1 6013 6241 -71 5 991 313 336 67 7 chr12 53283537 53283672 -67973858 - L1M5 LINE L1 -2961 3185 3043 5 991 855 256 17 0 chr12 53283726 53283906 -67973624 - B3A SINE B2 -15 183 1 5 991 238 390 53 6 chr12 53284229 53284399 -67973131 + MER5B DNA MER1_type 1 178 0 5 991 1184 248 22 41 chr12 53285096 53285408 -67972122 - RLTR20C LTR ERVK -14 520 215 5 991 3801 70 17 10 chr12 53285408 53285928 -67971602 - RLTR13D5 LTR ERVK 0 1023 500 5 991 445 192 28 28 chr12 53285920 53286027 -67971503 - RLTR20C LTR ERVK -371 189 83 5 991 2763 151 48 21 chr12 53287164 53287639 -67969891 + RMER13A LTR ERVK 1 488 -372 5 991 235 158 0 26 chr12 53289210 53289249 -67968281 - tRNA-Tyr-TAC tRNA tRNA -28 48 11 5 991 727 191 6 6 chr12 53289404 53289567 -67967963 + GA-rich Low_complexity Low_complexity 4 166 0 5 991 261 0 0 0 chr12 53289727 53289756 -67967774 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 991 249 33 0 0 chr12 53290003 53290033 -67967497 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 991 750 200 0 0 chr12 53290039 53290164 -67967366 - B1_Mur3 SINE Alu -24 125 1 5 991 240 35 0 0 chr12 53290541 53290570 -67966960 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 5 991 3465 103 79 7 chr12 53291678 53292233 -67965297 - MT2B LTR ERVL 0 601 7 5 991 615 329 6 0 chr12 53293529 53293699 -67963831 - MTD LTR MaLR -50 369 199 5 991 4377 161 74 6 chr12 53293699 53294934 -67962596 - L1_Mur3 LINE L1 -1722 4164 2735 5 991 256 299 140 70 chr12 53295573 53295747 -67961783 - MIR SINE MIR -2 266 63 5 991 481 295 60 13 chr12 53295947 53296098 -67961432 - RSINE1 SINE B4 0 165 8 5 991 281 177 363 0 chr12 53296359 53296483 -67961047 + L1MA7 LINE L1 6122 6290 -1 5 991 734 268 60 191 chr12 53296676 53297110 -67960420 - MTEa LTR MaLR 0 379 3 5 991 700 303 142 25 chr12 53297323 53297641 -67959889 - MER77 LTR ERVL -13 594 240 5 991 324 0 0 0 chr12 53297984 53298020 -67959510 + (TTA)n Simple_repeat Simple_repeat 3 38 0 5 991 4222 62 36 0 chr12 53298020 53298568 -67958962 - L1_Mus2 LINE L1 -11 6555 5988 5 991 676 219 79 35 chr12 53299765 53299968 -67957562 - B3 SINE B2 -3 213 2 5 991 424 48 32 0 chr12 53300305 53300368 -67957162 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 991 807 238 125 4 chr12 53300908 53301140 -67956390 + B4A SINE B4 3 262 -30 5 991 342 0 0 0 chr12 53301140 53301178 -67956352 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 991 266 246 14 0 chr12 53301184 53301253 -67956277 + (CAT)n Simple_repeat Simple_repeat 2 71 0 5 991 485 244 94 0 chr12 53301256 53301383 -67956147 - B1_Mur1 SINE Alu -10 139 1 5 991 243 88 0 0 chr12 53301417 53301451 -67956079 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 5 991 4936 61 0 0 chr12 53301478 53302098 -67955432 - L1Md_T LINE L1 -1 6581 5962 5 991 180 0 0 0 chr12 53302098 53302118 -67955412 + (T)n Simple_repeat Simple_repeat 1 20 0 5 991 37152 53 1 13 chr12 53302118 53308751 -67948779 - L1Md_T LINE L1 0 6585 102 5 991 497 295 181 0 chr12 53308999 53309236 -67948294 + B4A SINE B4 2 281 -11 5 991 255 279 35 11 chr12 53309897 53309984 -67947546 + L2c LINE L2 3097 3185 -202 5 991 785 292 134 15 chr12 53311463 53311656 -67945874 - MER54B LTR ERVL 0 793 576 5 991 2195 86 39 60 chr12 53311656 53311990 -67945540 - ORR1A2 LTR MaLR 0 327 1 5 991 785 292 134 15 chr12 53311990 53312064 -67945466 - MER54B LTR ERVL -218 575 495 5 991 2000 100 30 63 chr12 53312105 53312436 -67945094 - ORR1A4 LTR MaLR -9 320 1 5 991 297 206 11 21 chr12 53312482 53312576 -67944954 + GA-rich Low_complexity Low_complexity 3 95 0 5 991 1650 129 0 15 chr12 53312622 53312889 -67944641 + Lx LINE L1 6392 6654 0 5 991 2163 235 58 123 chr12 53313884 53314679 -67942851 + L1_Mur3 LINE L1 3112 3818 -2062 5 991 309 26 0 0 chr12 53314679 53314717 -67942813 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 5 991 2163 235 58 123 chr12 53314717 53315043 -67942487 + L1_Mur3 LINE L1 3819 4160 -1720 5 991 581 278 109 17 chr12 53315122 53315685 -67941845 - L1M2 LINE L1 -3752 3093 2472 5 991 180 0 0 0 chr12 53315685 53315705 -67941825 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 991 581 272 163 15 chr12 53315705 53315749 -67941781 - L1M2 LINE L1 -4378 2471 2428 5 991 192 77 0 0 chr12 53316508 53316534 -67940996 + (T)n Simple_repeat Simple_repeat 1 26 0 6 991 2330 71 22 0 chr12 53316701 53317023 -67940507 + BGLII LTR ERVK 93 421 0 6 991 228 35 0 0 chr12 53317614 53317643 -67939887 + (T)n Simple_repeat Simple_repeat 1 29 0 6 991 39345 10 2 6 chr12 53317679 53324290 -67933240 - L1Md_A LINE L1 0 6582 1 6 991 411 307 47 0 chr12 53324367 53324494 -67933036 + L3 LINE CR1 4148 4280 -209 6 991 366 339 42 16 chr12 53324907 53325099 -67932431 - MER20 DNA MER1_type -22 197 1 6 991 321 146 0 0 chr12 53325115 53325170 -67932360 - 4.5SRNA scRNA scRNA -29 65 11 6 991 2284 187 71 25 chr12 53325172 53325694 -67931836 + Lx4B LINE L1 6506 7051 -7 6 991 193 299 154 13 chr12 53326935 53327013 -67930517 + MIR SINE MIR 23 111 -97 6 991 21 82 0 0 chr12 53327240 53327289 -67930241 + AT_rich Low_complexity Low_complexity 1 49 0 6 991 585 96 0 0 chr12 53327376 53327470 -67930060 + (TC)n Simple_repeat Simple_repeat 1 94 0 6 991 601 250 12 24 chr12 53327485 53327649 -67929881 + Lx8 LINE L1 6318 6479 -994 6 991 229 195 38 25 chr12 53327761 53327840 -67929690 - Lx6 LINE L1 -6 7454 7375 6 991 2680 131 78 0 chr12 53328106 53328555 -67928975 - Lx2 LINE L1 0 6997 6514 6 991 414 315 70 78 chr12 53328562 53328820 -67928710 + L1MEg LINE L1 723 978 -5106 6 991 255 61 0 0 chr12 53330305 53330338 -67927192 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 991 333 47 0 0 chr12 53330494 53330537 -67926993 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 991 349 300 222 25 chr12 53330836 53331283 -67926247 - L1ME2 LINE L1 -2 6162 5625 6 991 732 169 0 8 chr12 53332401 53332526 -67925004 + MTC LTR MaLR 1 124 -297 6 991 1358 150 129 15 chr12 53332582 53332620 -67924910 + MTC LTR MaLR 119 159 -262 6 991 5066 90 78 112 chr12 53332620 53333544 -67923986 - RLTR13B1 LTR ERVK 0 893 1 6 991 1358 150 129 15 chr12 53333544 53333769 -67923761 + MTC LTR MaLR 160 412 -9 6 991 294 157 44 22 chr12 53333896 53333912 -67923618 + polypyrimidine Low_complexity Low_complexity 82 96 0 6 991 1074 89 5 27 chr12 53333912 53334096 -67923434 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 991 294 157 44 22 chr12 53334096 53334170 -67923360 + CT-rich Low_complexity Low_complexity 4 81 0 6 991 234 202 215 0 chr12 53334170 53334249 -67923281 - MER20 DNA MER1_type -22 197 102 6 991 258 81 0 0 chr12 53334381 53334418 -67923112 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 6 991 634 266 34 67 chr12 53334607 53334905 -67922625 - B4 SINE B4 -3 289 2 6 991 672 259 52 0 chr12 53335256 53335449 -67922081 - B3 SINE B2 -10 206 4 6 991 239 338 15 15 chr12 53335748 53335880 -67921650 - L1M5 LINE L1 -1101 5045 4914 6 991 4287 197 70 38 chr12 53336477 53337732 -67919798 - L1_Mur3 LINE L1 -1405 4475 3180 6 991 1417 251 86 47 chr12 53338246 53338907 -67918623 + L1MCa LINE L1 341 1027 -5481 6 991 267 103 0 0 chr12 53338914 53338953 -67918577 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 991 4277 86 7 28 chr12 53339786 53340584 -67916946 + L1_Mus4 LINE L1 6029 6636 0 6 991 22 35 0 0 chr12 53340895 53340924 -67916606 + AT_rich Low_complexity Low_complexity 1 29 0 6 991 330 283 158 36 chr12 53340939 53341104 -67916426 - B3A SINE B2 -13 185 1 6 991 2114 135 22 22 chr12 53341270 53341633 -67915897 - ORR1B2 LTR MaLR 0 367 5 6 991 4379 167 70 52 chr12 53341659 53342545 -67914985 + RMER19B LTR ERVK 1 902 0 6 991 25 31 0 0 chr12 53342579 53342611 -67914919 + AT_rich Low_complexity Low_complexity 1 32 0 6 991 2404 55 13 0 chr12 53342611 53342918 -67914612 - L1_Mus1 LINE L1 -2 6565 6255 6 991 201 238 0 0 chr12 53343141 53343221 -67914309 + GA-rich Low_complexity Low_complexity 1 80 0 6 991 770 267 90 73 chr12 53344227 53344595 -67912935 - Lx8 LINE L1 -3 7470 7097 6 991 2443 151 17 5 chr12 53344949 53345356 -67912174 - MTC LTR MaLR 0 421 10 6 991 242 143 20 0 chr12 53345486 53345535 -67911995 + CT-rich Low_complexity Low_complexity 3 52 0 6 991 189 147 0 0 chr12 53345618 53345652 -67911878 + (T)n Simple_repeat Simple_repeat 1 34 0 6 991 1069 51 65 0 chr12 53345685 53345823 -67911707 - B1_Mus2 SINE Alu 0 147 1 6 991 354 45 0 0 chr12 53345929 53345973 -67911557 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 991 261 0 0 0 chr12 53345982 53346011 -67911519 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 991 396 0 0 0 chr12 53346011 53346054 -67911476 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 123 273 266 73 47 chr12 53346159 53346309 -67911221 + L1MC5 LINE L1 7038 7191 -770 6 992 181 325 24 95 chr12 53346911 53347037 -67910493 + L2b LINE L2 2968 3084 -291 6 992 198 0 0 0 chr12 53348192 53348214 -67909316 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 992 794 243 42 95 chr12 53348488 53348752 -67908778 - MTE2b LTR MaLR -10 369 120 6 992 1103 255 42 78 chr12 53348788 53348951 -67908579 - MTE-int LTR MaLR -3 1577 1412 6 992 546 331 11 0 chr12 53348951 53349129 -67908401 + B3A SINE B2 3 182 -16 6 992 406 0 0 36 chr12 53349134 53349190 -67908340 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 992 1103 255 42 78 chr12 53349190 53349348 -67908182 - MTE-int LTR MaLR -169 1411 1270 6 992 1267 156 22 18 chr12 53349348 53349570 -67907960 - URR1B DNA MER1_type 0 225 3 6 992 1103 255 42 78 chr12 53349570 53349624 -67907906 - MTE-int LTR MaLR -311 1269 1209 6 992 529 344 147 5 chr12 53349609 53350004 -67907526 - MTE-int LTR MaLR -789 791 341 6 992 24 32 0 0 chr12 53350004 53350035 -67907495 + AT_rich Low_complexity Low_complexity 1 31 0 6 992 11863 50 5 2 chr12 53350065 53352366 -67905164 - L1Md_F2 LINE L1 0 6582 4306 6 992 576 65 0 0 chr12 53352996 53353073 -67904457 + (TCCCC)n Simple_repeat Simple_repeat 4 80 0 6 992 360 0 0 0 chr12 53353247 53353287 -67904243 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 992 1954 57 4 0 chr12 53353333 53353597 -67903933 - L1_Mus1 LINE L1 -533 6033 5769 6 992 4031 68 32 0 chr12 53353597 53354124 -67903406 + L1_Mus1 LINE L1 6024 6567 0 6 992 2093 168 52 5 chr12 53354848 53355250 -67902280 + MTC LTR MaLR 1 421 0 6 992 257 51 26 0 chr12 53356681 53356720 -67900810 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 992 189 308 25 13 chr12 53357114 53357193 -67900337 + MIR3 SINE MIR 117 196 -12 6 992 234 289 26 13 chr12 53357526 53357603 -67899927 + B4 SINE B4 1 78 -214 6 992 6036 235 71 114 chr12 53357657 53357692 -67899838 - L1_Rod LINE L1 -87 5760 5731 6 992 405 0 0 0 chr12 53357692 53357737 -67899793 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 992 6036 235 71 114 chr12 53357737 53359960 -67897570 - L1_Rod LINE L1 -117 5730 3606 6 992 669 25 0 0 chr12 53359960 53360039 -67897491 + (TTC)n Simple_repeat Simple_repeat 3 81 0 6 992 6036 235 71 114 chr12 53360039 53360932 -67896598 - L1_Rod LINE L1 -2242 3605 2755 6 992 759 22 0 0 chr12 53360932 53361021 -67896509 + (TC)n Simple_repeat Simple_repeat 2 90 0 6 992 6036 235 71 114 chr12 53361021 53361071 -67896459 - L1_Rod LINE L1 -3093 2754 2695 6 992 2023 143 129 26 chr12 53361191 53361571 -67895959 - MTC LTR MaLR 0 421 3 6 992 5568 13 0 0 chr12 53362345 53362969 -67894561 + L1Md_A LINE L1 5959 6582 0 6 992 265 409 0 9 chr12 53362980 53363096 -67894434 - MIR3 SINE MIR -30 178 64 6 992 24 53 0 0 chr12 53363217 53363255 -67894275 + AT_rich Low_complexity Low_complexity 1 38 0 6 992 222 167 18 18 chr12 53363693 53363748 -67893782 + GA-rich Low_complexity Low_complexity 2 56 0 6 992 459 73 0 0 chr12 53363751 53363819 -67893711 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 992 25 0 0 0 chr12 53364615 53364640 -67892890 + AT_rich Low_complexity Low_complexity 1 25 0 6 992 261 274 111 19 chr12 53364818 53364926 -67892604 - Lx7 LINE L1 -361 7335 7218 6 992 410 267 65 42 chr12 53364921 53365089 -67892441 + Lx7 LINE L1 5782 5953 -1743 6 992 250 259 0 18 chr12 53366336 53366391 -67891139 + 5S rRNA rRNA 1 54 -67 6 992 386 275 30 30 chr12 53366532 53366667 -67890863 - MLT1A1 LTR MaLR -5 403 269 6 992 4519 169 28 28 chr12 53366713 53367617 -67889913 - RMER13B LTR ERVK -4 904 1 6 992 580 328 100 27 chr12 53367922 53368182 -67889348 - RMER15 LTR ERVL -36 539 261 6 992 665 275 70 9 chr12 53368502 53368715 -67888815 + Lx8 LINE L1 7176 7401 -72 6 992 261 0 0 0 chr12 53369943 53369972 -67887558 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 992 1156 58 0 0 chr12 53369972 53370110 -67887420 - B1_Mus1 SINE Alu -9 139 2 6 992 297 361 61 8 chr12 53370242 53370373 -67887157 + L2a LINE L2 3289 3426 0 6 992 372 103 0 0 chr12 53370993 53371051 -67886479 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 992 490 83 59 12 chr12 53371406 53371491 -67886039 + PB1D9 SINE Alu 32 120 0 6 992 25 0 0 0 chr12 53371551 53371576 -67885954 + AT_rich Low_complexity Low_complexity 1 25 0 6 992 28 0 0 0 chr12 53372477 53372505 -67885025 + AT_rich Low_complexity Low_complexity 1 28 0 6 992 203 0 0 36 chr12 53372523 53372551 -67884979 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 992 1093 62 7 7 chr12 53372553 53372700 -67884830 - B1_Mus1 SINE Alu 0 148 2 6 992 243 193 127 14 chr12 53375211 53375285 -67882245 + MIRc SINE MIR 162 239 -29 6 992 254 292 104 82 chr12 53376569 53376752 -67880778 - LTR33A_ LTR ERVL -60 471 285 6 992 35 41 0 0 chr12 53378055 53378104 -67879426 + AT_rich Low_complexity Low_complexity 1 49 0 6 992 468 0 0 0 chr12 53378341 53378393 -67879137 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 992 919 275 142 36 chr12 53378576 53378885 -67878645 - MTEb LTR MaLR -37 342 1 6 992 2983 62 3 8 chr12 53379236 53379625 -67877905 - L1Md_F2 LINE L1 -16 6566 6180 6 992 237 258 61 0 chr12 53380329 53380395 -67877135 + ID4 SINE ID 4 73 -10 6 992 252 305 48 0 chr12 53380420 53380525 -67877005 + PB1D10 SINE Alu 1 110 -7 6 992 249 245 0 0 chr12 53381102 53381151 -67876379 + polypyrimidine Low_complexity Low_complexity 4 52 0 7 992 498 318 24 0 chr12 53381164 53381290 -67876240 - B1F2 SINE Alu -20 129 1 7 992 265 292 14 0 chr12 53381646 53381718 -67875812 - ID4_ SINE ID -6 77 5 7 992 2463 283 65 19 chr12 53383705 53384669 -67872861 - Lx9 LINE L1 -317 7327 6319 7 992 1122 165 0 64 chr12 53384669 53384889 -67872641 - MTC LTR MaLR 0 421 216 7 992 263 122 0 109 chr12 53384861 53384916 -67872614 - MTC-int LTR MaLR -469 789 741 7 992 237 267 66 55 chr12 53385149 53385240 -67872290 - MLT1A0 LTR MaLR -270 95 4 7 992 372 262 88 51 chr12 53385549 53385686 -67871844 - MIR3 SINE MIR -10 198 57 7 992 189 225 219 62 chr12 53387843 53387971 -67869559 - L4 LINE RTE -103 1926 1779 7 992 569 234 34 55 chr12 53388272 53388428 -67869102 + RSINE1 SINE B4 5 157 -8 7 992 239 317 112 84 chr12 53388428 53388451 -67869079 + B3A SINE B2 4 187 -11 7 992 766 249 319 0 chr12 53390935 53391252 -67866278 - MTD LTR MaLR 0 419 2 7 992 245 242 29 29 chr12 53391453 53391521 -67866009 - RLTR20B1 LTR ERVK -395 168 101 7 992 185 368 15 0 chr12 53391879 53391947 -67865583 + L2b LINE L2 3078 3146 -229 7 992 26 50 0 0 chr12 53393428 53393468 -67864062 + AT_rich Low_complexity Low_complexity 1 40 0 7 992 253 215 62 41 chr12 53393606 53393703 -67863827 - MIR SINE MIR -41 221 123 7 992 198 294 103 0 chr12 53394168 53394236 -67863294 + MIR SINE MIR 38 112 -96 7 992 221 183 17 0 chr12 53395561 53395621 -67861909 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 7 992 275 274 16 0 chr12 53395630 53395692 -67861838 + RSINE1 SINE B4 91 153 -12 7 992 25 0 0 0 chr12 53395914 53395939 -67861591 + AT_rich Low_complexity Low_complexity 1 25 0 7 992 258 105 0 0 chr12 53396036 53396074 -67861456 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 992 487 268 86 8 chr12 53396114 53396242 -67861288 - RSINE1 SINE B4 -24 141 4 7 992 293 270 63 38 chr12 53396249 53396407 -67861123 + L1M2 LINE L1 5273 5434 -857 7 992 234 276 66 0 chr12 53396459 53396535 -67860995 + L1M5 LINE L1 5688 5768 -676 7 992 261 250 31 0 chr12 53397278 53397342 -67860188 - B3A SINE B2 -41 157 92 7 992 553 298 72 5 chr12 53397506 53397715 -67859815 + L1MA8 LINE L1 4811 5033 -1110 7 992 1451 206 112 27 chr12 53397765 53398139 -67859391 - MTD LTR MaLR -6 413 8 7 992 260 253 150 7 chr12 53398200 53398384 -67859146 + L1MA8 LINE L1 5354 5571 -618 7 992 482 279 49 103 chr12 53398426 53398630 -67858900 - B3A SINE B2 0 198 6 7 992 1159 282 37 41 chr12 53398664 53399100 -67858430 + L1MA8 LINE L1 5614 6047 -244 7 992 333 272 105 0 chr12 53400576 53400690 -67856840 - MLT1I LTR MaLR -259 152 27 7 992 198 0 0 0 chr12 53400807 53400829 -67856701 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 992 1099 70 0 7 chr12 53400849 53400994 -67856536 - B1_Mm SINE Alu -2 145 2 7 992 203 293 115 43 chr12 53401171 53401310 -67856220 + L2c LINE L2 3073 3221 -166 7 992 182 267 22 0 chr12 53402533 53402578 -67854952 + MIR SINE MIR 117 162 -100 7 992 334 271 37 0 chr12 53403108 53403215 -67854315 - ORR1E LTR MaLR -226 133 23 7 992 198 292 122 20 chr12 53403509 53403607 -67853923 + L2c LINE L2 3271 3378 -9 7 992 26 30 0 0 chr12 53405233 53405266 -67852264 + AT_rich Low_complexity Low_complexity 1 33 0 7 992 434 254 177 0 chr12 53405289 53405419 -67852111 - RSINE1 SINE B4 -9 156 4 7 992 721 276 12 12 chr12 53406084 53406249 -67851281 - RSINE1 SINE B4 0 165 1 7 992 435 38 0 0 chr12 53406497 53406550 -67850980 + (CATA)n Simple_repeat Simple_repeat 2 54 0 7 992 263 323 14 36 chr12 53408412 53408550 -67848980 - MIRb SINE MIR -68 200 66 7 992 4662 23 2 0 chr12 53410312 53410842 -67846688 + L1Md_A LINE L1 6052 6582 0 7 992 306 0 0 0 chr12 53410866 53410900 -67846630 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 7 992 2041 159 18 75 chr12 53412299 53412700 -67844830 - ORR1C1 LTR MaLR 0 378 1 7 992 240 322 11 11 chr12 53413314 53413402 -67844128 + L1MD2 LINE L1 5742 5829 -530 7 992 248 282 0 34 chr12 53413639 53413727 -67843803 + ID_B1 SINE B4 140 224 0 7 992 2194 163 164 59 chr12 53413837 53414607 -67842923 + RMER6C LTR ERVK 1 720 0 7 992 385 287 14 34 chr12 53414657 53414805 -67842725 + L1MD2 LINE L1 6215 6359 0 7 992 239 200 133 0 chr12 53414939 53414999 -67842531 - RSINE1 SINE B4 -93 72 5 7 992 241 228 88 12 chr12 53415061 53415141 -67842389 - L1M5 LINE L1 -481 5759 5674 7 992 339 298 119 11 chr12 53415239 53415500 -67842030 - L1M5 LINE L1 -743 5403 5115 7 992 396 227 55 0 chr12 53416165 53416268 -67841262 - B1F2 SINE Alu 0 117 10 7 992 2707 54 39 6 chr12 53416669 53417024 -67840506 + L1Md_F2 LINE L1 6205 6571 -11 7 992 548 0 30 0 chr12 53417029 53417096 -67840434 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 7 992 247 297 31 52 chr12 53417143 53417239 -67840291 - PB1 SINE Alu -12 115 22 7 992 1345 164 101 25 chr12 53417269 53417545 -67839985 - Lx5 LINE L1 0 7050 6754 7 992 22 35 0 0 chr12 53417548 53417577 -67839953 + AT_rich Low_complexity Low_complexity 1 29 0 7 992 898 275 149 0 chr12 53417581 53417883 -67839647 - Lx8 LINE L1 -5 7468 7122 7 992 309 316 51 10 chr12 53417882 53418077 -67839453 + L1M5 LINE L1 2247 2449 -3697 7 992 555 283 169 58 chr12 53418420 53419042 -67838488 + L1MC LINE L1 2989 3679 -2467 7 992 354 237 100 17 chr12 53419091 53419211 -67838319 + RSINE1 SINE B4 1 130 -35 7 992 1081 220 105 31 chr12 53419357 53419709 -67837821 + MTE2b LTR MaLR 2 379 0 7 992 227 279 87 43 chr12 53419743 53419904 -67837626 + L1M5 LINE L1 3814 3981 -2165 7 992 580 263 23 0 chr12 53420012 53420145 -67837385 + B1F SINE Alu 6 141 -8 7 992 3136 226 86 21 chr12 53420270 53420913 -67836617 + RCHARR1 DNA MER1_type 3 696 -278 7 992 1450 206 67 20 chr12 53420913 53421270 -67836260 + ORR1D1 LTR MaLR 1 374 0 7 992 3136 226 86 21 chr12 53421270 53421523 -67836007 + RCHARR1 DNA MER1_type 697 957 -17 7 992 1341 245 56 11 chr12 53421578 53421937 -67835593 + MTE2b LTR MaLR 1 375 -4 7 992 345 295 0 9 chr12 53422043 53422156 -67835374 - PB1D10 SINE Alu -1 116 5 7 992 342 310 10 0 chr12 53423255 53423355 -67834175 + ID_B1 SINE B4 60 160 -64 7 992 408 264 27 45 chr12 53423283 53423394 -67834136 + PB1D10 SINE Alu 8 116 -1 7 992 209 135 19 0 chr12 53423404 53423456 -67834074 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 992 355 279 97 0 chr12 53423794 53423948 -67833582 + L1M5 LINE L1 4698 4866 -1280 7 992 288 261 29 0 chr12 53424058 53424127 -67833403 + L1M5 LINE L1 5063 5133 -1013 7 992 388 302 99 4 chr12 53424183 53424416 -67833114 + L1M5 LINE L1 5258 5512 -728 7 992 232 256 91 23 chr12 53424473 53424561 -67832969 + L1M5 LINE L1 5650 5743 -497 7 992 417 308 51 14 chr12 53424619 53424836 -67832694 + MLT1A0 LTR MaLR 17 241 -124 7 992 1084 185 65 5 chr12 53424978 53425179 -67832351 - B3 SINE B2 -3 213 1 7 992 309 109 0 0 chr12 53425327 53425382 -67832148 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 7 992 470 252 20 27 chr12 53425900 53426047 -67831483 - RMER15 LTR ERVL -90 485 340 7 992 621 180 101 8 chr12 53426047 53426176 -67831354 + URR1B DNA MER1_type 1 141 -84 7 992 1690 199 83 39 chr12 53426243 53426603 -67830927 + ORR1C1 LTR MaLR 1 376 -2 7 992 437 0 19 0 chr12 53426691 53426744 -67830786 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 992 445 281 8 0 chr12 53427172 53427300 -67830230 - MLT1A1 LTR MaLR 0 408 280 7 992 897 278 103 15 chr12 53427505 53427768 -67829762 + Lx8 LINE L1 7053 7338 -135 7 992 389 234 46 9 chr12 53427782 53427890 -67829640 - PB1D10 SINE Alu -5 112 1 7 992 422 274 54 7 chr12 53427890 53427965 -67829565 - ID SINE ID -142 82 1 7 992 450 83 0 0 chr12 53427973 53428045 -67829485 + (TC)n Simple_repeat Simple_repeat 1 72 0 7 992 591 244 91 10 chr12 53428059 53428258 -67829272 - L1MA4 LINE L1 -374 5926 5712 7 992 189 175 0 0 chr12 53428287 53428327 -67829203 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 992 675 261 28 11 chr12 53428347 53428525 -67829005 - B3 SINE B2 -34 182 2 7 992 194 0 39 0 chr12 53429128 53429154 -67828376 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 992 2095 259 128 30 chr12 53430142 53431246 -67826284 - Lx8 LINE L1 -4 7469 6258 7 992 537 314 59 44 chr12 53433318 53433591 -67823939 - MLT2D LTR ERVL -4 410 134 7 992 965 114 92 40 chr12 53434347 53434521 -67823009 - URR1A DNA MER1_type -40 186 4 7 992 373 230 118 8 chr12 53437877 53438004 -67819526 - MER5A DNA MER1_type -38 151 11 7 992 243 333 75 19 chr12 53438082 53438241 -67819289 - MIRb SINE MIR -6 262 95 7 992 180 0 0 0 chr12 53439717 53439737 -67817793 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 992 1480 32 16 0 chr12 53439773 53439958 -67817572 + L1Md_F2 LINE L1 6393 6580 -2 7 992 575 256 106 20 chr12 53440013 53440212 -67817318 + B3 SINE B2 1 216 0 7 992 29582 39 4 0 chr12 53441048 53445188 -67812342 + L1_Mm LINE L1 1432 5586 -297 7 992 8406 37 1 0 chr12 53445188 53446171 -67811359 + L1Md_F3 LINE L1 5587 6570 -14 7 992 185 0 0 39 chr12 53446382 53446408 -67811122 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 7 992 2032 157 87 11 chr12 53446478 53446844 -67810686 + ORR1B1 LTR MaLR 1 394 0 7 992 451 240 77 66 chr12 53447163 53447359 -67810171 - B3A SINE B2 0 198 1 7 992 287 269 122 48 chr12 53448364 53448594 -67808936 + L2c LINE L2 1742 1988 -1431 7 992 5160 136 29 2 chr12 53449164 53449997 -67807533 + L1_Mur2 LINE L1 4767 5621 -256 7 992 211 287 112 41 chr12 53450700 53450798 -67806732 - MIR SINE MIR -70 192 88 7 992 238 180 0 74 chr12 53450926 53450980 -67806550 - B3A SINE B2 -148 50 1 7 992 291 290 31 39 chr12 53451267 53451396 -67806134 + L2c LINE L2 3058 3185 -202 7 992 293 312 80 55 chr12 53451401 53451601 -67805929 - MLT1N2 LTR MaLR -4 558 354 7 992 444 338 38 0 chr12 53451988 53452121 -67805409 + L2c LINE L2 3250 3387 0 7 992 827 265 45 21 chr12 53452807 53453050 -67804480 - B4A SINE B4 0 292 44 8 992 238 333 93 0 chr12 53453087 53453162 -67804368 - ID4_ SINE ID 0 83 2 8 992 21 57 0 0 chr12 53454300 53454335 -67803195 + AT_rich Low_complexity Low_complexity 1 35 0 8 992 243 399 38 81 chr12 53455617 53455827 -67801703 - MamRep38 DNA hAT -22 273 73 8 992 2144 162 12 60 chr12 53455890 53456304 -67801226 - ORR1B1 LTR MaLR 0 394 1 8 992 10382 127 40 117 chr12 53456304 53458430 -67799100 - ORR1B1-int LTR MaLR 0 1963 1 8 992 1777 167 111 14 chr12 53458430 53458789 -67798741 - ORR1B1 LTR MaLR 0 394 1 8 992 327 268 11 11 chr12 53459450 53459537 -67797993 + CT-rich Low_complexity Low_complexity 3 89 0 8 992 356 292 8 55 chr12 53459919 53460046 -67797484 + PB1 SINE Alu 5 125 -2 8 992 362 262 219 0 chr12 53460899 53461082 -67796448 - LTR50 LTR ERVL -16 779 557 8 992 235 253 96 0 chr12 53461289 53461372 -67796158 - LTR50 LTR ERVL -702 93 3 8 992 435 284 25 25 chr12 53461567 53461686 -67795844 - PB1D7 SINE Alu -1 119 1 8 992 241 231 164 86 chr12 53461842 53461970 -67795560 + MIRb SINE MIR 29 166 -102 8 992 193 235 0 0 chr12 53462012 53462046 -67795484 + L2b LINE L2 3320 3353 -22 8 992 543 313 166 12 chr12 53463199 53463542 -67793988 + L2a LINE L2 3026 3421 -5 8 992 874 258 25 21 chr12 53463943 53464184 -67793346 - Lx9 LINE L1 -642 7002 6761 8 992 266 267 108 4 chr12 53464455 53464549 -67792981 - PB1D10 SINE Alu -45 104 2 8 992 528 256 38 22 chr12 53464564 53464748 -67792782 - L1M2 LINE L1 -519 5772 5586 8 992 22 0 0 0 chr12 53464757 53464779 -67792751 + AT_rich Low_complexity Low_complexity 1 22 0 8 992 452 270 29 87 chr12 53464782 53464919 -67792611 - RSINE1 SINE B4 -7 158 30 8 992 1652 230 21 12 chr12 53464919 53465258 -67792272 + MTD LTR MaLR 1 342 -77 8 992 2092 274 18 22 chr12 53465260 53465813 -67791717 - Lx9 LINE L1 -789 6855 6305 8 992 604 212 114 0 chr12 53466247 53466379 -67791151 - B1_Mur1 SINE Alu -2 147 1 8 992 21 0 0 0 chr12 53466388 53466409 -67791121 + AT_rich Low_complexity Low_complexity 1 21 0 8 992 1688 222 29 31 chr12 53466525 53466943 -67790587 + MTD LTR MaLR 3 419 0 8 992 1378 187 15 149 chr12 53466943 53467052 -67790478 + MTD-int LTR MaLR 1 105 -1153 8 992 1244 153 81 0 chr12 53467052 53467261 -67790269 - URR1A DNA MER1_type 0 226 1 8 992 1378 190 15 148 chr12 53467261 53467555 -67789975 + MTD-int LTR MaLR 106 337 -921 8 992 534 16 0 0 chr12 53467586 53467649 -67789881 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 8 992 499 317 38 98 chr12 53467711 53467977 -67789553 - L3 LINE CR1 -1505 2984 2735 8 992 244 304 12 12 chr12 53468598 53468678 -67788852 - L3 LINE CR1 -2273 2216 2137 8 992 230 189 0 70 chr12 53469931 53469988 -67787542 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 992 549 257 128 34 chr12 53470030 53470296 -67787234 - B4A SINE B4 -1 291 1 8 992 208 297 45 45 chr12 53471819 53471936 -67785594 - MIRm SINE MIR -93 169 57 8 992 1994 159 171 22 chr12 53471978 53472434 -67785096 + RLTR28 LTR ERVL 1 524 0 8 992 565 198 54 0 chr12 53472437 53472548 -67784982 + ID_B1 SINE B4 105 221 -3 8 992 358 385 20 53 chr12 53472819 53472929 -67784601 + B4A SINE B4 11 112 -180 8 992 2618 148 157 8 chr12 53472929 53473394 -67784136 + RMER15 LTR ERVL 4 543 -32 8 992 369 0 0 0 chr12 53473394 53473435 -67784095 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 992 213 65 0 0 chr12 53473435 53473465 -67784065 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 992 2618 148 157 8 chr12 53473465 53473496 -67784034 + RMER15 LTR ERVL 544 574 -1 8 992 358 385 20 53 chr12 53473496 53473629 -67783901 + B4A SINE B4 113 246 -46 8 992 600 53 0 0 chr12 53473629 53473705 -67783825 + (GGAA)n Simple_repeat Simple_repeat 3 78 0 8 992 1132 164 21 0 chr12 53473705 53473894 -67783636 + Lx7 LINE L1 6785 6977 -719 8 992 721 204 130 83 chr12 53473893 53474336 -67783194 + Lx7 LINE L1 7242 7692 -4 8 992 282 56 0 0 chr12 53474468 53474504 -67783026 + (GGA)n Simple_repeat Simple_repeat 2 37 0 8 992 405 260 155 24 chr12 53474923 53475185 -67782345 + MTEa LTR MaLR 1 266 -113 8 992 256 240 26 13 chr12 53475154 53475230 -67782300 + MTEa LTR MaLR 190 266 -113 8 992 267 253 26 13 chr12 53475199 53475275 -67782255 + MTE2b LTR MaLR 190 266 -113 8 992 254 220 34 0 chr12 53475256 53475315 -67782215 + MTEb LTR MaLR 176 236 -123 8 992 243 232 36 0 chr12 53475301 53475357 -67782173 + MTEb LTR MaLR 176 233 -126 8 992 326 264 9 54 chr12 53475334 53475446 -67782084 + MTEb LTR MaLR 190 296 -83 8 992 1193 75 0 0 chr12 53475459 53475605 -67781925 + B1_Mus2 SINE Alu 1 146 -1 8 992 195 340 0 0 chr12 53475868 53475918 -67781612 + L3b LINE CR1 428 477 -5 8 992 303 93 0 0 chr12 53476125 53476168 -67781362 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 8 993 872 187 124 57 chr12 53478976 53479186 -67778344 + ID_B1 SINE B4 1 224 0 8 993 373 331 52 13 chr12 53479496 53479649 -67777881 - MER5B DNA MER1_type -13 165 7 8 993 354 288 78 56 chr12 53479663 53479843 -67777687 - MER5A DNA MER1_type 0 189 6 8 993 1021 255 132 15 chr12 53479907 53480309 -67777221 - L1MB3 LINE L1 -19 6164 5716 8 993 699 205 99 148 chr12 53480331 53480534 -67776996 - B4 SINE B4 -2 290 81 8 993 189 0 0 0 chr12 53480534 53480555 -67776975 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 993 699 205 99 148 chr12 53480555 53480655 -67776875 - B4 SINE B4 -212 80 2 8 993 210 299 50 40 chr12 53481098 53481199 -67776331 - MIR3 SINE MIR -1 207 106 8 993 465 19 0 0 chr12 53481938 53481992 -67775538 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 8 993 195 152 0 0 chr12 53481992 53482038 -67775492 + T-rich Low_complexity Low_complexity 1 46 0 8 993 1168 75 0 7 chr12 53482039 53482186 -67775344 - B1_Mus2 SINE Alu -1 146 1 8 993 225 333 137 62 chr12 53483776 53483987 -67773543 - MLT1C LTR MaLR -43 629 403 8 993 281 26 0 26 chr12 53484108 53484147 -67773383 + (GGGTG)n Simple_repeat Simple_repeat 4 41 0 8 993 272 266 30 60 chr12 53484185 53484285 -67773245 - MLT1C LTR MaLR -365 102 6 8 993 1929 143 107 34 chr12 53484527 53484939 -67772591 - RMER10A LTR ERVL 0 442 1 8 993 180 0 0 0 chr12 53485115 53485135 -67772395 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 993 216 255 0 0 chr12 53485536 53485587 -67771943 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 993 241 0 0 93 chr12 53486118 53486161 -67771369 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 8 993 219 139 0 0 chr12 53486360 53486396 -67771134 + (T)n Simple_repeat Simple_repeat 1 36 0 8 993 477 342 99 9 chr12 53487805 53488038 -67769492 - MIRc SINE MIR -2 266 13 8 993 253 118 0 0 chr12 53488467 53488501 -67769029 - Arthur1C DNA Tip100 -329 34 1 8 993 327 404 104 19 chr12 53488773 53489081 -67768449 + L3 LINE CR1 3119 3452 -1037 8 993 820 244 40 15 chr12 53489282 53489482 -67768048 + B3 SINE B2 12 216 0 8 993 490 230 17 17 chr12 53489917 53490032 -67767498 + PB1D10 SINE Alu 1 115 -2 8 993 341 317 69 61 chr12 53492009 53492254 -67765276 + L2c LINE L2 3141 3387 0 8 993 882 36 0 0 chr12 53492576 53492686 -67764844 + (GGA)n Simple_repeat Simple_repeat 2 111 0 8 993 581 150 169 78 chr12 53493129 53493295 -67764235 + B2_Mm2 SINE B2 1 181 -14 8 993 192 179 0 0 chr12 53493998 53494037 -67763493 + (TTG)n Simple_repeat Simple_repeat 1 39 0 8 993 835 149 14 34 chr12 53494037 53494183 -67763347 - B1_Mur3 SINE Alu -6 143 1 8 993 327 49 0 0 chr12 53494266 53494307 -67763223 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 8 993 210 118 0 0 chr12 53494323 53494357 -67763173 + (TATG)n Simple_repeat Simple_repeat 1 34 0 8 993 735 283 11 16 chr12 53494357 53494540 -67762990 - B3A SINE B2 -16 182 1 8 993 287 348 48 24 chr12 53497913 53498078 -67759452 + L1MB8 LINE L1 5953 6121 -57 8 993 300 190 17 33 chr12 53498078 53498138 -67759392 - ID SINE ID -142 82 24 8 993 284 231 0 44 chr12 53498083 53498151 -67759379 - BC1_Mm scRNA scRNA -77 75 11 8 993 246 304 104 60 chr12 53499808 53499990 -67757540 + MIRb SINE MIR 18 207 -61 8 993 299 273 53 27 chr12 53500076 53500211 -67757319 + L1M5 LINE L1 3624 3762 -2384 1 993 568 334 69 21 chr12 53500429 53500805 -67756725 - L1MEf LINE L1 -1914 4232 3839 2 993 441 0 0 0 chr12 53500964 53501013 -67756517 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 993 425 257 0 0 chr12 53501096 53501201 -67756329 - MLT2C1 LTR ERVL -231 166 62 4 993 500 277 95 107 chr12 53501251 53501849 -67755681 - ERVL-int LTR ERVL -22 5692 5102 5 993 523 320 177 16 chr12 53501858 53502169 -67755361 - MLT1A LTR MaLR -13 361 1 6 993 1674 321 68 10 chr12 53502169 53502892 -67754638 - ERVL-int LTR ERVL -606 5151 4387 5 993 790 278 105 46 chr12 53502907 53503277 -67754253 - ERVL-int LTR ERVL -1449 4265 3874 5 993 1164 240 140 20 chr12 53503418 53503775 -67753755 + MTD LTR MaLR 8 407 -12 7 993 1642 295 70 31 chr12 53503784 53504397 -67753133 - ERVL-int LTR ERVL -2270 3444 2808 5 993 1359 243 88 14 chr12 53504411 53504832 -67752698 - ERVL-int LTR ERVL -2958 2756 2305 5 993 413 310 177 42 chr12 53504832 53505647 -67751883 - L1MEf LINE L1 -2567 3579 2655 2 993 243 340 72 26 chr12 53505751 53505944 -67751586 - L1MEf LINE L1 -3560 2586 2385 2 993 7644 88 22 5 chr12 53505944 53507404 -67750126 + L1_Mus4 LINE L1 5144 6635 -1 8 993 637 175 9 0 chr12 53507829 53507943 -67749587 - B1_Mur1 SINE Alu -1 148 34 9 993 563 271 60 0 chr12 53508179 53508330 -67749200 - RSINE1 SINE B4 -5 160 1 1 993 321 26 0 0 chr12 53508359 53508397 -67749133 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 993 951 103 0 0 chr12 53508399 53508535 -67748995 - B1_Mus2 SINE Alu -6 141 6 1 993 378 0 0 0 chr12 53508542 53508584 -67748946 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 993 327 246 141 15 chr12 53508721 53508873 -67748657 - L1MEf LINE L1 -4601 1641 1460 2 993 355 235 0 0 chr12 53508900 53508985 -67748545 - PB1D10 SINE Alu -5 112 28 1 993 362 252 190 25 chr12 53509037 53509323 -67748207 - MLT1A LTR MaLR 0 374 4 1 993 839 224 56 10 chr12 53509425 53509623 -67747907 - B3 SINE B2 -9 207 1 1 993 250 334 116 55 chr12 53509643 53509797 -67747733 - L1MEf LINE L1 -4903 1339 1161 2 993 855 98 0 0 chr12 53509797 53509920 -67747610 + (TTTC)n Simple_repeat Simple_repeat 1 123 0 1 993 250 334 116 55 chr12 53509920 53510332 -67747198 - L1MEf LINE L1 -5082 1160 739 2 993 578 131 0 10 chr12 53512429 53512529 -67745001 + (TTC)n Simple_repeat Simple_repeat 1 99 0 1 993 561 30 0 0 chr12 53514634 53514701 -67742829 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 993 3160 68 2 2 chr12 53515077 53515477 -67742053 + MTB LTR MaLR 1 400 0 2 993 1041 145 0 0 chr12 53515751 53515930 -67741600 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 993 352 309 177 24 chr12 53516230 53516810 -67740720 - L2a LINE L2 -33 3393 2713 2 993 194 173 26 26 chr12 53516873 53516950 -67740580 + GA-rich Low_complexity Low_complexity 1 77 0 2 993 362 221 23 0 chr12 53517263 53517349 -67740181 + L1Md_F2 LINE L1 136 223 -6393 2 993 3828 148 53 32 chr12 53517345 53517935 -67739595 + L1Md_F2 LINE L1 503 1123 -5493 2 993 1222 54 0 0 chr12 53517935 53518082 -67739448 + B1_Mm SINE Alu 1 147 0 2 993 33769 64 3 10 chr12 53518082 53522590 -67734940 + L1Md_F2 LINE L1 1124 5584 -299 2 993 7676 72 4 13 chr12 53522592 53523596 -67733934 + L1Md_F2 LINE L1 5587 6581 -1 2 993 590 269 42 16 chr12 53523608 53523797 -67733733 - MER58B DNA MER1_type -147 194 1 2 993 240 118 63 0 chr12 53525596 53525658 -67731872 - L2b LINE L2 -1 3425 3329 2 993 336 240 0 0 chr12 53526651 53526751 -67730779 + (TG)n Simple_repeat Simple_repeat 1 100 0 2 993 500 176 0 0 chr12 53527386 53527471 -67730059 - B3A SINE B2 -107 91 7 2 993 2214 105 84 69 chr12 53528246 53528642 -67728888 + Lx LINE L1 6231 6639 -15 3 993 471 35 0 0 chr12 53528642 53528699 -67728831 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 993 2214 105 84 69 chr12 53528699 53528720 -67728810 + Lx LINE L1 6640 6654 0 3 993 258 316 13 0 chr12 53528800 53528876 -67728654 + ID SINE ID 6 82 -142 3 993 253 343 61 57 chr12 53529949 53530212 -67727318 - LTR85a LTR Gypsy? -146 556 293 3 993 208 305 85 0 chr12 53530390 53530472 -67727058 - L2c LINE L2 -5 3382 3294 3 993 262 257 0 0 chr12 53532357 53532431 -67725099 + B1F2 SINE Alu 40 113 -36 3 993 234 0 0 0 chr12 53532446 53532472 -67725058 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 993 329 291 38 19 chr12 53532483 53532588 -67724942 + B1F SINE Alu 11 117 -32 3 993 2035 241 25 8 chr12 53533136 53533621 -67723909 - RLTR16 LTR ERVK -12 493 1 3 993 375 23 0 0 chr12 53535380 53535424 -67722106 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 993 297 0 0 0 chr12 53535429 53535462 -67722068 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 993 926 226 11 0 chr12 53535462 53535639 -67721891 - B3 SINE B2 -32 184 6 4 993 384 22 0 0 chr12 53536259 53536304 -67721226 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 4 993 318 156 0 0 chr12 53536318 53536382 -67721148 + GA-rich Low_complexity Low_complexity 2 65 0 4 993 234 0 0 0 chr12 53536782 53536808 -67720722 + (A)n Simple_repeat Simple_repeat 1 26 0 4 993 1757 227 10 12 chr12 53537275 53537487 -67720043 - MTD LTR MaLR -8 411 201 4 993 186 43 0 0 chr12 53537487 53537510 -67720020 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 993 1757 227 10 12 chr12 53537510 53537707 -67719823 - MTD LTR MaLR -219 200 4 4 993 3569 163 141 17 chr12 53537846 53538628 -67718902 - RMER19B LTR ERVK 0 902 49 4 993 2215 173 77 0 chr12 53538626 53539053 -67718477 + RMER15 LTR ERVL 116 575 0 4 993 425 234 0 11 chr12 53539948 53540043 -67717487 + B1F SINE Alu 1 94 -55 4 993 303 286 12 0 chr12 53540412 53540496 -67717034 + MIR SINE MIR 36 120 -88 5 993 411 345 78 13 chr12 53541797 53542029 -67715501 + LTR88b LTR Gypsy? 116 362 -475 5 993 238 407 62 35 chr12 53542440 53542697 -67714833 + LTR16E2 LTR ERVL 27 290 -278 5 993 461 250 84 108 chr12 53543144 53543310 -67714220 + RSINE1 SINE B4 2 163 -2 5 993 2365 167 39 11 chr12 53544064 53544500 -67713030 + Lx3C LINE L1 6527 6974 -2 5 993 22 0 0 0 chr12 53544502 53544524 -67713006 + AT_rich Low_complexity Low_complexity 1 22 0 5 993 393 22 0 0 chr12 53544755 53544801 -67712729 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 993 363 322 49 53 chr12 53544818 53545044 -67712486 + LTR16E2 LTR ERVL 258 482 -86 5 993 252 0 0 0 chr12 53545078 53545106 -67712424 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 993 255 61 0 0 chr12 53545204 53545237 -67712293 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 993 242 339 82 33 chr12 53545409 53545531 -67711999 + B1_Mm SINE Alu 1 128 -19 5 993 247 319 84 11 chr12 53545575 53545670 -67711860 + PB1D10 SINE Alu 1 102 -15 6 993 247 306 12 12 chr12 53549133 53549219 -67708311 - MLT1L LTR MaLR -319 291 206 6 993 222 340 10 67 chr12 53550375 53550479 -67707051 + MIR3 SINE MIR 110 207 -1 6 993 791 207 14 0 chr12 53550535 53550680 -67706850 + B1_Mm SINE Alu 1 147 0 6 993 477 0 0 0 chr12 53550683 53550736 -67706794 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 6 993 928 147 6 11 chr12 53550738 53550917 -67706613 + CT-rich Low_complexity Low_complexity 3 180 0 6 993 22 56 0 0 chr12 53551464 53551500 -67706030 + AT_rich Low_complexity Low_complexity 1 36 0 6 993 226 346 20 10 chr12 53551536 53551638 -67705892 - RSINE1 SINE B4 -51 114 12 6 993 320 260 0 38 chr12 53552000 53552080 -67705450 + ID2 SINE ID 1 77 -6 6 993 217 171 0 50 chr12 53552097 53552177 -67705353 + (CACCAT)n Simple_repeat Simple_repeat 2 77 0 6 993 299 327 57 38 chr12 53553963 53554173 -67703357 - MIR SINE MIR -12 250 37 7 993 1363 213 78 3 chr12 53554531 53554688 -67702842 + ORR1D1 LTR MaLR 7 166 -208 7 993 435 19 0 0 chr12 53554688 53554740 -67702790 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 993 1363 213 78 3 chr12 53554740 53554916 -67702614 + ORR1D1 LTR MaLR 167 364 -10 7 993 265 321 54 30 chr12 53555320 53555487 -67702043 - AmnSINE1 SINE SINE -89 486 316 7 993 838 121 8 0 chr12 53555689 53555821 -67701709 + ORR1A3 LTR MaLR 1 133 -193 7 993 3777 120 63 73 chr12 53555822 53556198 -67701332 - ORR1A2-int LTR MaLR -1205 758 388 7 993 1197 82 0 7 chr12 53556198 53556345 -67701185 + B1_Mus1 SINE Alu 1 146 -2 7 993 4040 119 62 73 chr12 53556345 53556734 -67700796 - ORR1A2-int LTR MaLR -1581 382 1 7 993 2028 108 46 0 chr12 53556738 53557043 -67700487 - ORR1A2 LTR MaLR -8 319 1 7 993 365 218 11 11 chr12 53557848 53557936 -67699594 + PB1 SINE Alu 21 108 -19 7 993 770 238 55 42 chr12 53558659 53558896 -67698634 - Lx6 LINE L1 -3 7457 7218 7 993 1389 225 128 32 chr12 53558896 53559517 -67698013 - Lx5 LINE L1 -454 6596 5798 7 993 24 0 0 0 chr12 53559701 53559725 -67697805 + AT_rich Low_complexity Low_complexity 1 24 0 8 993 407 206 22 0 chr12 53559932 53560024 -67697506 - Lx7 LINE L1 0 7696 7603 8 993 288 0 0 0 chr12 53560038 53560070 -67697460 + (TC)n Simple_repeat Simple_repeat 2 33 0 8 993 248 227 133 10 chr12 53560159 53560257 -67697273 - Lx7 LINE L1 -281 7415 7306 8 993 10182 70 30 15 chr12 53560248 53562348 -67695182 + Lx3_Mus LINE L1 4896 7007 -2 8 993 5252 211 56 12 chr12 53562371 53563411 -67694119 - Lx7 LINE L1 -377 7319 6235 8 993 1734 150 196 3 chr12 53563422 53563749 -67693781 - RMER4B LTR ERVK -8 577 188 8 993 1706 266 110 17 chr12 53563749 53564082 -67693448 - L1MA4 LINE L1 -158 6142 5794 8 993 342 0 0 0 chr12 53564082 53564120 -67693410 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 993 1706 266 110 17 chr12 53564120 53564505 -67693025 - L1MA4 LINE L1 -507 5793 5358 8 993 501 17 0 0 chr12 53566224 53566282 -67691248 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 993 184 200 50 0 chr12 53566371 53566411 -67691119 - L2c LINE L2 -42 3345 3304 8 993 226 224 69 0 chr12 53566638 53566696 -67690834 + MER5A DNA MER1_type 48 106 -83 8 993 198 103 0 0 chr12 53566895 53566924 -67690606 + (A)n Simple_repeat Simple_repeat 1 29 0 9 993 182 333 68 39 chr12 53567502 53567605 -67689925 - MER5B DNA MER1_type -1 177 72 9 993 1154 102 7 0 chr12 53567878 53568025 -67689505 + B1_Mus1 SINE Alu 1 148 0 9 993 207 0 0 0 chr12 53568563 53568586 -67688944 + (A)n Simple_repeat Simple_repeat 1 23 0 9 993 7129 128 58 16 chr12 53568954 53570050 -67687480 - Lx4A LINE L1 -1 7057 5915 9 993 860 153 14 8 chr12 53570051 53570215 -67687315 + Lx4B LINE L1 5782 5949 -1695 9 993 514 197 8 8 chr12 53570470 53570593 -67686937 + GA-rich Low_complexity Low_complexity 1 123 0 9 993 447 264 35 26 chr12 53572207 53572320 -67685210 + PB1D7 SINE Alu 6 119 -1 9 993 198 365 16 0 chr12 53572620 53572683 -67684847 - MIRb SINE MIR -141 127 64 9 993 773 96 43 32 chr12 53573182 53573349 -67684181 - ORR1A4 LTR MaLR -184 143 1 9 993 386 245 104 25 chr12 53573612 53573775 -67683755 - L1MD LINE L1 -608 5571 5396 1 993 461 276 185 31 chr12 53573786 53574182 -67683348 - L1MD LINE L1 -1929 4217 3750 1 993 730 271 28 0 chr12 53574296 53574440 -67683090 + B3A SINE B2 1 148 -50 1 993 321 26 0 0 chr12 53574441 53574479 -67683051 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 993 22 0 0 0 chr12 53574937 53574959 -67682571 + AT_rich Low_complexity Low_complexity 1 22 0 1 993 213 231 0 0 chr12 53577405 53577444 -67680086 - B1F SINE Alu -85 64 26 1 993 198 0 0 0 chr12 53577463 53577485 -67680045 + (A)n Simple_repeat Simple_repeat 1 22 0 1 993 584 276 56 73 chr12 53577516 53577750 -67679780 + B4 SINE B4 1 230 -62 1 993 233 182 0 18 chr12 53578109 53578165 -67679365 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 993 282 321 36 58 chr12 53578210 53578394 -67679136 + MIR SINE MIR 34 223 -45 1 993 258 105 0 0 chr12 53578483 53578521 -67679009 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 993 492 256 0 0 chr12 53580623 53580713 -67676817 + PB1D10 SINE Alu 10 99 -18 1 993 301 342 8 50 chr12 53580722 53580842 -67676688 + MER5A DNA MER1_type 64 178 -11 8 993 261 0 0 0 chr12 53582182 53582211 -67675319 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 993 281 259 0 0 chr12 53582469 53582523 -67675007 - ID4 SINE ID -15 68 15 1 993 210 91 0 0 chr12 53582546 53582579 -67674951 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 993 21 0 0 0 chr12 53582700 53582721 -67674809 + AT_rich Low_complexity Low_complexity 1 21 0 1 993 750 23 0 0 chr12 53582934 53583022 -67674508 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 993 198 0 0 0 chr12 53583223 53583245 -67674285 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 993 417 39 0 0 chr12 53584200 53584251 -67673279 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 993 237 322 54 102 chr12 53584262 53584428 -67673102 + L2b LINE L2 3060 3217 -158 1 993 1672 31 0 40 chr12 53584623 53584823 -67672707 + B2_Mm1a SINE B2 2 193 0 1 993 185 339 80 35 chr12 53585637 53585750 -67671780 + L2b LINE L2 3230 3347 -28 1 993 432 0 0 0 chr12 53586384 53586432 -67671098 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 993 235 299 39 13 chr12 53587528 53587606 -67669924 + RLTR15 LTR ERVK 99 178 -181 1 993 603 0 0 0 chr12 53587625 53587692 -67669838 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 993 386 233 69 8 chr12 53587694 53587824 -67669706 - RLTR15 LTR ERVK -221 138 1 1 993 346 301 94 40 chr12 53587824 53587973 -67669557 + B3A SINE B2 57 213 -3 1 993 241 296 102 90 chr12 53588366 53588700 -67668830 + ORR1E LTR MaLR 11 348 -11 1 993 393 58 0 0 chr12 53588969 53589021 -67668509 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 993 216 239 0 0 chr12 53589062 53589108 -67668422 + GA-rich Low_complexity Low_complexity 4 49 0 1 993 320 286 82 0 chr12 53590013 53590111 -67667419 - PB1D10 SINE Alu -11 106 1 1 993 341 283 80 10 chr12 53590024 53590124 -67667406 - ID_B1 SINE B4 -48 176 70 1 993 959 248 9 24 chr12 53590519 53590730 -67666800 - B4A SINE B4 0 292 85 1 993 277 224 0 0 chr12 53590756 53590805 -67666725 - PB1 SINE Alu 0 127 79 1 993 592 272 98 35 chr12 53591564 53591928 -67665602 - L1MA6 LINE L1 0 6291 5905 1 993 788 94 17 0 chr12 53591928 53592045 -67665485 - BC1_Mm scRNA scRNA -33 119 1 1 993 982 261 132 27 chr12 53592045 53592486 -67665044 - L1MA6 LINE L1 -399 5901 5415 1 993 1052 270 23 38 chr12 53592483 53592829 -67664701 + L1M2 LINE L1 4637 4977 -1166 1 993 215 241 19 0 chr12 53592829 53592883 -67664647 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 1 993 392 189 10 106 chr12 53593600 53593737 -67663793 + PB1D9 SINE Alu 3 129 -20 1 993 584 219 23 0 chr12 53593807 53593935 -67663595 + ID_B1 SINE B4 83 213 -11 1 993 28 0 0 0 chr12 53594139 53594167 -67663363 + AT_rich Low_complexity Low_complexity 1 28 0 1 993 354 241 45 27 chr12 53595424 53595535 -67661995 + PB1D10 SINE Alu 2 114 -3 1 993 1126 170 35 15 chr12 53595607 53595810 -67661720 + B3 SINE B2 4 210 -6 1 993 1162 158 45 0 chr12 53595918 53596120 -67661410 + URR1A DNA MER1_type 12 222 -4 1 993 1219 75 0 7 chr12 53596120 53596267 -67661263 + B1_Mus2 SINE Alu 2 147 0 1 993 222 118 0 0 chr12 53596269 53596303 -67661227 + (A)n Simple_repeat Simple_repeat 1 34 0 1 993 320 307 15 23 chr12 53596430 53596560 -67660970 - RCHARR1 DNA MER1_type 0 974 846 1 993 1852 235 106 25 chr12 53596565 53597093 -67660437 - RCHARR1 DNA MER1_type -401 573 3 1 993 211 128 26 0 chr12 53597521 53597560 -67659970 + (CAA)n Simple_repeat Simple_repeat 2 41 0 1 993 450 0 0 0 chr12 53597770 53597820 -67659710 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 993 518 215 139 9 chr12 53598131 53598239 -67659291 - B1F SINE Alu -7 142 21 1 993 260 250 114 45 chr12 53598167 53598255 -67659275 - MT2B LTR ERVL -341 260 167 1 993 199 293 0 17 chr12 53598580 53598639 -67658891 - MIRc SINE MIR -190 78 21 1 993 557 170 0 11 chr12 53598992 53599081 -67658449 - ID_B1 SINE B4 -7 217 130 1 993 193 135 0 37 chr12 53599177 53599231 -67658299 + (TTA)n Simple_repeat Simple_repeat 3 54 0 1 993 325 292 93 9 chr12 53599270 53599377 -67658153 - ID_B1 SINE B4 -106 118 3 1 993 22 0 0 0 chr12 53599908 53599930 -67657600 + AT_rich Low_complexity Low_complexity 1 22 0 1 993 364 211 39 26 chr12 53599938 53600016 -67657514 + ID4_ SINE ID 3 81 -2 1 993 216 246 13 40 chr12 53604637 53604713 -67652817 + GA-rich Low_complexity Low_complexity 1 74 0 1 993 21 71 0 0 chr12 53604741 53604783 -67652747 + GC_rich Low_complexity Low_complexity 1 42 0 1 993 264 280 24 8 chr12 53604893 53605019 -67652511 + (CG)n Simple_repeat Simple_repeat 2 129 0 1 993 192 125 0 0 chr12 53605308 53605340 -67652190 + (CCG)n Simple_repeat Simple_repeat 1 32 0 1 993 497 0 55 0 chr12 53607568 53607641 -67649889 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 994 509 189 379 0 chr12 53608889 53609021 -67648509 - B3A SINE B2 -16 182 1 1 994 786 272 19 14 chr12 53609159 53609368 -67648162 + B3 SINE B2 2 211 -5 1 994 515 236 225 44 chr12 53610369 53610551 -67646979 + B3 SINE B2 2 216 0 1 994 498 254 8 32 chr12 53610928 53611054 -67646476 - ID_B1 SINE B4 0 224 102 1 994 364 309 48 41 chr12 53611054 53611071 -67646459 - B1F SINE Alu 0 147 4 1 994 311 302 131 58 chr12 53611071 53611208 -67646322 - B1F SINE Alu -1 148 2 1 994 423 0 0 0 chr12 53611214 53611261 -67646269 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 994 536 262 95 14 chr12 53611385 53611532 -67645998 + RSINE1 SINE B4 3 161 -4 1 994 1082 208 19 5 chr12 53613038 53613251 -67644279 - B3 SINE B2 0 216 1 1 994 28 48 0 0 chr12 53613259 53613301 -67644229 + AT_rich Low_complexity Low_complexity 1 42 0 1 994 491 340 122 42 chr12 53613603 53613912 -67643618 - L2 LINE L2 -431 2988 2648 1 994 192 77 0 0 chr12 53613912 53613938 -67643592 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 994 491 340 122 42 chr12 53613938 53613965 -67643565 - L2 LINE L2 -772 2647 2625 1 994 21 57 0 0 chr12 53613995 53614030 -67643500 + AT_rich Low_complexity Low_complexity 1 35 0 1 994 1973 264 99 53 chr12 53614197 53614993 -67642537 - MTD-int LTR MaLR -424 834 2 1 994 741 224 235 9 chr12 53614982 53615212 -67642318 - MTD LTR MaLR 0 419 138 1 994 265 224 14 29 chr12 53615188 53615257 -67642273 - MT2A LTR ERVL -465 68 1 1 994 385 286 67 22 chr12 53615257 53615436 -67642094 - L1MA4 LINE L1 -156 6144 5958 1 994 229 272 34 90 chr12 53616557 53616646 -67640884 + ID SINE ID 1 84 -140 1 994 22 0 0 0 chr12 53621003 53621025 -67636505 + AT_rich Low_complexity Low_complexity 1 22 0 1 994 288 328 83 41 chr12 53621768 53621889 -67635641 - PB1 SINE Alu -1 126 1 1 994 1246 151 31 22 chr12 53622306 53622529 -67635001 - URR1A DNA MER1_type 0 226 2 1 994 486 230 55 44 chr12 53622644 53622842 -67634688 - B4A SINE B4 -56 236 1 1 994 371 273 57 62 chr12 53623461 53623637 -67633893 + MER104 DNA Tc2 4 178 -3 1 994 376 273 63 9 chr12 53624864 53624975 -67632555 - PB1D10 SINE Alu 0 117 1 1 994 255 125 0 0 chr12 53625012 53625052 -67632478 + (A)n Simple_repeat Simple_repeat 1 40 0 1 994 1189 79 18 0 chr12 53625125 53625290 -67632240 + B2_Mm2 SINE B2 14 181 -14 1 994 322 286 117 62 chr12 53625323 53625580 -67631950 + L1MD LINE L1 3803 4073 -2073 1 994 475 253 215 21 chr12 53625614 53625800 -67631730 + Lx7 LINE L1 7100 7321 -375 1 994 186 128 0 0 chr12 53626660 53626699 -67630831 + (T)n Simple_repeat Simple_repeat 1 39 0 1 994 6805 89 36 34 chr12 53627035 53628095 -67629435 - Lx3A LINE L1 -3 6978 5916 1 994 224 0 65 0 chr12 53628095 53628126 -67629404 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 1 994 6805 89 36 34 chr12 53628126 53628169 -67629361 - Lx3A LINE L1 -1066 5915 5873 1 994 22 35 0 0 chr12 53628261 53628290 -67629240 + AT_rich Low_complexity Low_complexity 1 29 0 1 994 352 280 27 45 chr12 53628457 53628569 -67628961 + PB1 SINE Alu 8 117 -10 1 994 22 0 0 0 chr12 53628712 53628734 -67628796 + AT_rich Low_complexity Low_complexity 1 22 0 1 994 315 284 63 18 chr12 53629131 53629242 -67628288 + PB1D10 SINE Alu 1 116 -1 1 994 195 69 0 0 chr12 53629269 53629298 -67628232 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 994 23 68 0 0 chr12 53629417 53629461 -67628069 + AT_rich Low_complexity Low_complexity 1 44 0 1 994 381 328 64 0 chr12 53629462 53629587 -67627943 - Charlie4z DNA MER1_type -33 134 2 1 994 21 36 0 0 chr12 53629843 53629871 -67627659 + AT_rich Low_complexity Low_complexity 1 28 0 1 994 1103 62 7 0 chr12 53630049 53630195 -67627335 + B1_Mus1 SINE Alu 2 148 0 1 994 372 94 0 0 chr12 53630197 53630250 -67627280 + (GAAAA)n Simple_repeat Simple_repeat 2 54 0 1 994 347 215 27 42 chr12 53630409 53630511 -67627019 - PB1D10 SINE Alu 0 117 25 2 994 351 333 62 21 chr12 53630673 53630817 -67626713 + MER20 DNA MER1_type 66 215 -4 2 994 1673 264 144 15 chr12 53631112 53631863 -67625667 - L1MD2 LINE L1 -17 6342 5495 2 994 889 102 0 0 chr12 53632240 53632367 -67625163 - B1_Mus1 SINE Alu 0 148 22 2 994 815 223 88 5 chr12 53632848 53633042 -67624488 + B3 SINE B2 7 216 0 2 994 256 369 41 8 chr12 53633214 53633337 -67624193 - L2 LINE L2 -757 2662 2536 2 994 216 324 28 37 chr12 53633374 53633483 -67624047 - L2 LINE L2 -970 2449 2342 2 994 673 189 162 9 chr12 53633791 53634020 -67623510 + Tigger2b DNA MER2_type 145 408 -318 2 994 480 305 45 19 chr12 53634982 53635139 -67622391 + RSINE1 SINE B4 5 165 0 2 994 523 235 43 0 chr12 53635310 53635425 -67622105 - B4A SINE B4 -169 123 4 2 994 2522 242 105 47 chr12 53635429 53636518 -67621012 - L1M2 LINE L1 -845 5452 4307 2 994 889 52 104 0 chr12 53636518 53636652 -67620878 - B1_Mus1 SINE Alu 0 148 1 2 994 2522 250 114 47 chr12 53636652 53636965 -67620565 - L1M2 LINE L1 -1837 4306 3962 2 994 219 139 0 0 chr12 53637117 53637153 -67620377 + (A)n Simple_repeat Simple_repeat 1 36 0 2 994 288 111 0 0 chr12 53637244 53637289 -67620241 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 994 23 0 0 0 chr12 53637346 53637369 -67620161 + AT_rich Low_complexity Low_complexity 1 23 0 2 994 596 289 40 20 chr12 53637369 53637521 -67620009 - RSINE1 SINE B4 0 165 11 2 994 359 338 64 60 chr12 53637650 53637883 -67619647 - B4 SINE B4 -13 279 46 2 994 26 50 0 0 chr12 53637993 53638033 -67619497 + AT_rich Low_complexity Low_complexity 1 40 0 2 994 270 324 62 44 chr12 53638038 53638151 -67619379 - B1F SINE Alu -2 115 1 2 994 196 274 245 0 chr12 53638229 53638331 -67619199 - L2a LINE L2 -363 3063 2937 2 994 299 287 114 40 chr12 53638635 53638784 -67618746 - RMER15 LTR ERVL -16 559 400 2 994 334 309 226 4 chr12 53638977 53639211 -67618319 - L2a LINE L2 -852 2567 2282 2 994 748 225 126 35 chr12 53639543 53639715 -67617815 + Lx9 LINE L1 7297 7477 -167 2 994 315 0 0 0 chr12 53639715 53639750 -67617780 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 994 748 225 126 35 chr12 53639750 53639863 -67617667 + Lx9 LINE L1 7478 7608 -36 2 994 21 0 0 0 chr12 53640188 53640209 -67617321 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 994 90 0 0 chr12 53640404 53640538 -67616992 + B1_Mus1 SINE Alu 5 138 -10 2 994 225 65 0 0 chr12 53640538 53640569 -67616961 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 994 335 299 95 22 chr12 53640892 53641029 -67616501 - B1F1 SINE Alu -1 148 2 2 994 207 176 0 0 chr12 53641286 53641320 -67616210 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 994 678 148 98 38 chr12 53641324 53641457 -67616073 - B1_Mur3 SINE Alu -6 143 3 2 994 504 288 175 7 chr12 53641709 53641863 -67615667 - B3A SINE B2 -18 180 1 2 994 21 36 0 0 chr12 53643874 53643902 -67613628 + AT_rich Low_complexity Low_complexity 1 28 0 2 994 21 0 0 0 chr12 53644169 53644190 -67613340 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 579 225 78 28 chr12 53644255 53644397 -67613133 - B1_Mur2 SINE Alu 0 149 1 2 994 639 216 59 9 chr12 53645273 53645488 -67612042 - L1MEc LINE L1 -2204 4115 3877 2 994 247 298 121 22 chr12 53645669 53645851 -67611679 - L1MEc LINE L1 -6022 378 179 2 994 264 345 26 0 chr12 53646040 53646156 -67611374 - L2 LINE L2 -985 2434 2316 2 994 679 260 195 18 chr12 53646283 53646616 -67610914 - L1MB5 LINE L1 -261 5913 5522 2 994 210 71 0 0 chr12 53646673 53646701 -67610829 + (T)n Simple_repeat Simple_repeat 1 28 0 2 994 526 56 0 14 chr12 53646701 53646773 -67610757 - B1_Mm SINE Alu 0 147 77 2 994 803 232 126 0 chr12 53646773 53646963 -67610567 + B3 SINE B2 3 216 0 2 994 1143 55 0 0 chr12 53646986 53647131 -67610399 + B1_Mus1 SINE Alu 4 148 0 2 994 183 80 0 0 chr12 53647133 53647158 -67610372 + (A)n Simple_repeat Simple_repeat 1 25 0 2 994 596 112 61 10 chr12 53647256 53647355 -67610175 - B1_Mus2 SINE Alu 0 147 44 2 994 26 30 0 0 chr12 53647558 53647591 -67609939 + AT_rich Low_complexity Low_complexity 1 33 0 2 994 270 0 0 0 chr12 53647628 53647658 -67609872 + (CCA)n Simple_repeat Simple_repeat 2 31 0 2 994 757 190 7 14 chr12 53647707 53647851 -67609679 + B1_Mur1 SINE Alu 2 144 -5 2 994 510 244 68 8 chr12 53647900 53648032 -67609498 - B1_Mus2 SINE Alu -6 141 2 2 994 1219 280 123 49 chr12 53648879 53649488 -67608042 - Lx8 LINE L1 -5 7468 6815 2 994 184 357 90 75 chr12 53650209 53650421 -67607109 + L2 LINE L2 2358 2572 -847 2 994 618 164 116 8 chr12 53650686 53650815 -67606715 + B1F2 SINE Alu 7 149 0 2 994 706 279 111 28 chr12 53650978 53651302 -67606228 - L1_Mur3 LINE L1 -66 5814 5464 2 994 867 234 21 26 chr12 53651392 53651585 -67605945 - ID_B1 SINE B4 -30 194 3 2 994 255 288 12 0 chr12 53651607 53651687 -67605843 - L1_Mm LINE L1 -443 5440 5360 2 994 387 0 0 0 chr12 53651767 53651810 -67605720 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 994 521 290 7 40 chr12 53651825 53651836 -67605694 - B4A SINE B4 -62 230 222 2 994 612 57 9 54 chr12 53651836 53651947 -67605583 - Lx LINE L1 0 6654 6549 2 994 521 290 7 40 chr12 53651947 53652086 -67605444 - B4A SINE B4 -71 221 85 2 994 761 259 35 60 chr12 53652096 53652297 -67605233 - B3A SINE B2 -1 197 2 2 994 336 247 0 21 chr12 53652470 53652565 -67604965 - L1M2 LINE L1 -1359 4784 4692 2 994 1618 206 103 28 chr12 53652691 53653081 -67604449 - MTD LTR MaLR 0 419 1 2 994 1143 244 63 45 chr12 53653081 53653414 -67604116 - ORR1D2 LTR MaLR -31 339 1 2 994 566 309 120 72 chr12 53653431 53653792 -67603738 - L1M2 LINE L1 -3120 3023 2689 2 994 3300 69 0 2 chr12 53653792 53654226 -67603304 + L1_Mus1 LINE L1 6135 6567 0 2 994 566 309 120 72 chr12 53654226 53654712 -67602818 - L1M2 LINE L1 -3455 2688 2135 2 994 436 238 111 18 chr12 53655364 53655535 -67601995 - L1M3 LINE L1 -2180 3960 3774 2 994 530 209 9 19 chr12 53655766 53655873 -67601657 - PB1D9 SINE Alu -6 114 9 2 994 705 293 120 43 chr12 53656153 53656503 -67601027 + MTEa LTR MaLR 3 379 0 2 994 324 0 0 0 chr12 53657324 53657360 -67600170 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 994 730 252 113 11 chr12 53657391 53657656 -67599874 - B4A SINE B4 0 292 1 2 994 258 266 0 84 chr12 53657665 53657784 -67599746 - L1ME2z LINE L1 -255 6189 6081 2 994 527 257 0 0 chr12 53657965 53658074 -67599456 - PB1D10 SINE Alu -7 110 2 2 994 237 262 23 23 chr12 53658078 53658164 -67599366 - L1ME2z LINE L1 -272 5890 5805 2 994 22 0 0 0 chr12 53658684 53658706 -67598824 + AT_rich Low_complexity Low_complexity 1 22 0 2 994 502 221 0 26 chr12 53658769 53658885 -67598645 + PB1D9 SINE Alu 1 113 -7 2 994 23 33 0 0 chr12 53659739 53659769 -67597761 + AT_rich Low_complexity Low_complexity 1 30 0 2 994 197 312 197 32 chr12 53660184 53660352 -67597178 + MIRb SINE MIR 28 209 -53 2 994 207 69 0 0 chr12 53660377 53660406 -67597124 + (A)n Simple_repeat Simple_repeat 1 29 0 2 994 231 174 43 0 chr12 53661400 53661446 -67596084 + CT-rich Low_complexity Low_complexity 1 48 0 2 994 389 319 27 75 chr12 53661456 53661602 -67595928 - B4A SINE B4 -128 164 26 2 994 524 304 12 30 chr12 53661933 53662099 -67595431 + RSINE1 SINE B4 3 165 0 2 994 422 283 35 59 chr12 53662137 53662340 -67595190 + B3A SINE B2 1 198 0 2 994 1066 76 0 0 chr12 53662750 53662895 -67594635 - B2_Mm2 SINE B2 -50 145 1 2 994 333 244 116 82 chr12 53662897 53663044 -67594486 + MER58B DNA MER1_type 115 266 -75 2 994 315 0 0 0 chr12 53663139 53663174 -67594356 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 994 258 32 0 0 chr12 53663176 53663207 -67594323 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 994 234 246 82 0 chr12 53663600 53663661 -67593869 - ID4_ SINE ID -16 67 2 2 994 28 95 0 0 chr12 53664170 53664254 -67593276 + AT_rich Low_complexity Low_complexity 1 84 0 2 994 288 286 43 0 chr12 53664289 53664359 -67593171 + ID4 SINE ID 11 83 0 2 994 1039 88 0 26 chr12 53664367 53664518 -67593012 + B1_Mus1 SINE Alu 2 148 0 2 994 21 57 0 0 chr12 53664627 53664662 -67592868 + AT_rich Low_complexity Low_complexity 1 35 0 2 994 21 82 0 0 chr12 53665077 53665126 -67592404 + AT_rich Low_complexity Low_complexity 1 49 0 2 994 973 249 152 22 chr12 53665239 53665579 -67591951 - MTD LTR MaLR -2 417 6 2 994 231 262 115 35 chr12 53665632 53665719 -67591811 - L2a LINE L2 -46 3380 3287 2 994 480 289 33 0 chr12 53665935 53666056 -67591474 - B3A SINE B2 -73 125 1 2 994 226 261 163 0 chr12 53666237 53666329 -67591201 + MER5A DNA MER1_type 1 107 -82 2 994 189 352 0 64 chr12 53666356 53666450 -67591080 + MER5A DNA MER1_type 84 171 -18 2 994 182 338 0 66 chr12 53666396 53666472 -67591058 - MER5B DNA MER1_type -106 72 2 2 994 443 279 12 36 chr12 53667124 53667274 -67590256 - PB1D10 SINE Alu -2 147 6 2 994 247 267 30 100 chr12 53667189 53667289 -67590241 - MT2B2 LTR ERVL -338 246 154 2 994 24 53 0 0 chr12 53668525 53668563 -67588967 + AT_rich Low_complexity Low_complexity 1 38 0 2 994 22 0 0 0 chr12 53670050 53670072 -67587458 + AT_rich Low_complexity Low_complexity 1 22 0 2 994 270 81 0 0 chr12 53671238 53671275 -67586255 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 2 994 28 0 0 0 chr12 53671660 53671688 -67585842 + AT_rich Low_complexity Low_complexity 1 28 0 2 994 754 282 24 28 chr12 53671776 53671988 -67585542 + ID_B1 SINE B4 1 211 -13 2 994 261 0 0 0 chr12 53673005 53673034 -67584496 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 994 24 53 0 0 chr12 53673236 53673274 -67584256 + AT_rich Low_complexity Low_complexity 1 38 0 2 994 249 228 70 0 chr12 53674347 53674404 -67583126 + MLT1F LTR MaLR 6 66 -482 2 994 533 280 36 42 chr12 53675433 53675601 -67581929 - MER20 DNA MER1_type -1 218 52 3 994 277 341 94 82 chr12 53676185 53676439 -67581091 + MER74A LTR ERVL 220 508 -114 3 994 278 251 99 30 chr12 53676566 53676767 -67580763 + Lx9 LINE L1 569 783 -6825 3 994 9706 191 112 77 chr12 53676746 53679435 -67578095 + Lx9 LINE L1 1510 4431 -1416 3 994 905 109 0 98 chr12 53679435 53679598 -67577932 + B1_Mus1 SINE Alu 2 148 0 3 994 9706 191 112 77 chr12 53679598 53680568 -67576962 + Lx9 LINE L1 4432 5298 -549 3 994 4753 55 0 0 chr12 53680566 53681188 -67576342 + L1Md_F3 LINE L1 4965 5586 -297 3 994 8605 24 2 0 chr12 53681188 53682179 -67575351 + L1Md_F3 LINE L1 5587 6579 -5 3 994 1746 233 35 178 chr12 53682179 53682291 -67575239 + Lx9 LINE L1 5523 5551 -296 3 994 3270 81 7 7 chr12 53682291 53682727 -67574803 + RLTR10C LTR ERVK 1 436 0 3 994 1746 233 54 46 chr12 53682727 53683230 -67574300 + Lx9 LINE L1 5552 6052 -1592 3 994 271 127 98 37 chr12 53683241 53683323 -67574207 + Lx9 LINE L1 6160 6246 -1398 3 994 294 238 162 0 chr12 53683337 53683417 -67574113 + Lx9 LINE L1 6505 6597 -1047 3 994 2856 165 25 27 chr12 53683422 53683804 -67573726 + Lx9 LINE L1 6949 7317 -327 3 994 264 30 0 0 chr12 53683804 53683837 -67573693 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 994 2856 165 25 27 chr12 53683837 53683972 -67573558 + Lx9 LINE L1 7318 7465 -179 3 994 263 56 74 0 chr12 53683976 53684030 -67573500 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 994 467 145 50 17 chr12 53684032 53684151 -67573379 + Lx9 LINE L1 7516 7638 -6 3 994 1361 288 138 23 chr12 53684164 53684771 -67572759 + Lx8 LINE L1 6597 7273 -200 3 994 311 380 20 0 chr12 53685582 53685682 -67571848 + MER81 DNA AcHobo 13 114 0 3 994 1968 128 24 30 chr12 53686709 53687040 -67570490 - ORR1A4 LTR MaLR 0 329 1 3 994 1279 91 11 0 chr12 53687674 53687850 -67569680 + B2_Mm1t SINE B2 2 179 -14 3 994 1217 48 0 0 chr12 53687852 53687999 -67569531 - B1_Mm SINE Alu 0 147 1 3 994 338 247 141 55 chr12 53689011 53689174 -67568356 - L1MEg LINE L1 -2730 3416 3240 3 994 396 241 84 25 chr12 53689312 53689431 -67568099 + PB1 SINE Alu 2 127 0 3 994 181 98 49 0 chr12 53689433 53689474 -67568056 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 994 229 321 100 6 chr12 53689856 53690016 -67567514 - L1MEg LINE L1 -4663 1503 1329 3 994 671 286 88 50 chr12 53690105 53690481 -67567049 + MLT1B LTR MaLR 1 390 0 3 994 332 324 79 28 chr12 53690520 53690698 -67566832 - L1MEg LINE L1 -5118 1124 938 3 994 206 0 69 0 chr12 53690744 53690773 -67566757 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 3 994 458 191 8 22 chr12 53691400 53691534 -67565996 + C-rich Low_complexity Low_complexity 4 135 0 3 994 228 333 0 47 chr12 53692634 53692719 -67564811 - L2c LINE L2 -9 3378 3298 3 994 4026 53 10 21 chr12 53692777 53693295 -67564235 - RLTR1B LTR ERV1 0 512 1 3 994 1213 27 0 7 chr12 53694284 53694432 -67563098 - B1_Mus2 SINE Alu 0 147 1 3 994 25 31 0 0 chr12 53694444 53694476 -67563054 + AT_rich Low_complexity Low_complexity 1 32 0 3 994 823 188 26 42 chr12 53694483 53694672 -67562858 - B3A SINE B2 -12 186 1 3 994 527 221 58 110 chr12 53695351 53695524 -67562006 - RSINE1 SINE B4 0 165 2 3 994 3178 56 2 5 chr12 53695805 53696202 -67561328 - MTA_Mm LTR MaLR 0 396 1 3 994 369 0 0 0 chr12 53696353 53696394 -67561136 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 3 994 1366 76 43 11 chr12 53696866 53697053 -67560477 + B2_Mm2 SINE B2 1 193 -2 3 994 358 301 140 28 chr12 53698980 53699158 -67558372 - L1ME2 LINE L1 -44 6120 5923 3 994 3373 191 66 22 chr12 53699170 53699664 -67557866 - Lx2B LINE L1 -1 6999 6472 3 994 3509 112 54 4 chr12 53699664 53700201 -67557329 - LTRIS2 LTR ERV1 0 564 1 3 994 3373 191 66 22 chr12 53700201 53700463 -67557067 - Lx2B LINE L1 -529 6471 6210 3 994 515 240 19 39 chr12 53700552 53700656 -67556874 - RSINE1 SINE B4 -59 106 5 3 994 235 249 17 0 chr12 53700729 53700815 -67556715 - L1ME2 LINE L1 -301 5863 5775 3 994 719 235 59 43 chr12 53700927 53701114 -67556416 - MTE2b LTR MaLR -11 368 179 3 994 992 203 18 36 chr12 53701543 53701763 -67555767 - B3 SINE B2 0 216 1 3 994 289 229 12 24 chr12 53701906 53701991 -67555539 - L1ME2 LINE L1 -1034 5112 5029 3 994 559 214 8 64 chr12 53702070 53702195 -67555335 + RSINE1 SINE B4 19 136 -29 3 994 204 129 31 46 chr12 53702371 53702436 -67555094 + GA-rich Low_complexity Low_complexity 4 67 0 3 994 1098 88 14 0 chr12 53702664 53702812 -67554718 - B1_Mur4 SINE Alu 0 150 1 3 994 448 278 29 29 chr12 53703477 53703497 -67554033 - B1F SINE Alu -12 137 4 3 994 467 268 0 18 chr12 53703497 53703611 -67553919 - ID_B1 SINE B4 -28 196 85 3 994 983 0 0 0 chr12 53704774 53704880 -67552650 + U6 snRNA snRNA 1 106 -1 3 994 21 36 0 0 chr12 53705241 53705269 -67552261 + AT_rich Low_complexity Low_complexity 1 28 0 3 994 983 0 0 0 chr12 53705472 53705578 -67551952 - U6 snRNA snRNA -1 106 1 3 994 2047 111 101 9 chr12 53706962 53707298 -67550232 - ORR1B2 LTR MaLR 0 367 1 3 994 240 304 8 0 chr12 53707602 53707620 -67549910 + ORR1B1-int LTR MaLR 629 647 -862 3 994 886 111 8 0 chr12 53707620 53707746 -67549784 + B1_Mus2 SINE Alu 1 127 -20 3 994 264 329 0 0 chr12 53709254 53709327 -67548203 + B3A SINE B2 1 73 -125 3 994 631 224 82 27 chr12 53709374 53709558 -67547972 + RMER5 LTR ERV1 341 534 0 3 994 577 260 131 45 chr12 53709819 53710109 -67547421 + LTR37A LTR ERV1 86 400 -26 3 994 1393 174 172 38 chr12 53710821 53711087 -67546443 - MTC LTR MaLR 0 421 98 3 994 958 79 48 0 chr12 53711087 53711213 -67546317 - B1_Mus1 SINE Alu -16 132 1 3 994 1393 174 172 38 chr12 53711213 53711317 -67546213 - MTC LTR MaLR -324 97 2 3 994 479 213 0 47 chr12 53711642 53711770 -67545760 - Lx7 LINE L1 0 7696 7575 3 994 2176 103 51 0 chr12 53711770 53712081 -67545449 + ORR1A2 LTR MaLR 1 327 0 3 994 8050 132 36 174 chr12 53712081 53712430 -67545100 + ORR1A2-int LTR MaLR 1 348 -1615 3 994 315 0 0 0 chr12 53712430 53712465 -67545065 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 994 8050 132 36 174 chr12 53712465 53714294 -67543236 + ORR1A2-int LTR MaLR 349 1878 -85 3 994 364 299 0 67 chr12 53714255 53714359 -67543171 - B1_Mur3 SINE Alu -52 97 1 3 994 7379 56 7 15 chr12 53714384 53715814 -67541716 - L1_Mus2 LINE L1 -2 6564 5146 3 994 450 179 0 12 chr12 53716504 53716589 -67540941 + ID_B1 SINE B4 109 192 -32 3 994 229 273 132 33 chr12 53716755 53716846 -67540684 - MLT1J2 LTR MaLR -112 336 237 3 994 300 340 94 6 chr12 53717101 53717261 -67540269 - L1MEd LINE L1 -4063 2086 1913 3 994 310 348 45 6 chr12 53717582 53717738 -67539792 - L1MEd LINE L1 -4620 1529 1368 3 994 1077 98 0 0 chr12 53717828 53717971 -67539559 - B1_Mus2 SINE Alu -2 145 3 3 994 326 354 71 9 chr12 53717971 53718174 -67539356 - L1MEd LINE L1 -4883 1236 1020 3 994 589 307 34 19 chr12 53718333 53718655 -67538875 - Lx8 LINE L1 -257 7216 6890 3 994 1278 101 16 11 chr12 53719465 53719655 -67537875 + B2_Mm2 SINE B2 4 194 -1 3 994 1147 56 0 0 chr12 53719660 53719802 -67537728 + B1_Mus1 SINE Alu 1 142 -6 3 994 270 0 0 0 chr12 53719813 53719843 -67537687 + (A)n Simple_repeat Simple_repeat 1 30 0 3 994 2138 191 49 35 chr12 53720203 53720788 -67536742 - RLTR31_Mur LTR ERVK 0 553 38 3 994 303 322 51 25 chr12 53720956 53721074 -67536456 + LTR84a LTR ERVL 1 121 -636 3 994 708 284 237 7 chr12 53721634 53721942 -67535588 - MTEa LTR MaLR 0 379 1 3 994 3742 189 30 57 chr12 53723205 53724083 -67533447 + Lx7 LINE L1 6840 7696 0 3 994 662 294 52 3 chr12 53724086 53724373 -67533157 - L1_Rod LINE L1 -456 5391 5091 3 994 1309 227 132 22 chr12 53725738 53726103 -67531427 - MTD LTR MaLR -2 417 13 3 994 395 228 23 34 chr12 53726107 53726284 -67531246 + G-rich Low_complexity Low_complexity 6 180 0 3 994 180 0 0 0 chr12 53726860 53726880 -67530650 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 994 366 247 13 0 chr12 53727574 53727651 -67529879 + RSINE1 SINE B4 66 143 -22 3 994 382 324 20 0 chr12 53728032 53728134 -67529396 - PB1D10 SINE Alu -13 104 1 3 994 225 346 149 3 chr12 53730563 53730719 -67526811 + MIRm SINE MIR 40 209 -53 3 994 479 325 20 40 chr12 53731014 53731213 -67526317 + MIR SINE MIR 1 195 -67 3 994 256 368 75 30 chr12 53731263 53731462 -67526068 + MIRb SINE MIR 25 232 -36 3 994 219 211 0 0 chr12 53732762 53732800 -67524730 + B1F2 SINE Alu 10 47 -102 3 994 340 229 14 54 chr12 53732832 53732906 -67524624 + ID4_ SINE ID 2 72 -11 3 994 1247 13 17 21 chr12 53732906 53733145 -67524385 + (CA)n Simple_repeat Simple_repeat 1 237 0 3 994 314 283 211 12 chr12 53733146 53733307 -67524223 + ID_B1 SINE B4 24 216 -8 3 994 214 212 83 83 chr12 53733389 53733461 -67524069 + MER5B DNA MER1_type 37 108 -70 3 994 2427 160 48 5 chr12 53733733 53734129 -67523401 - MTC LTR MaLR -8 413 1 3 994 188 86 29 0 chr12 53734666 53734701 -67522829 + (TTG)n Simple_repeat Simple_repeat 2 37 0 3 994 4215 148 72 49 chr12 53734701 53735532 -67521998 + RMER19B LTR ERVK 41 890 -12 3 994 988 70 0 14 chr12 53735650 53735794 -67521736 + (GAAAA)n Simple_repeat Simple_repeat 2 143 0 3 994 265 231 123 0 chr12 53735795 53735860 -67521670 + RSINE1 SINE B4 51 123 -42 3 994 205 146 0 0 chr12 53735876 53735912 -67521618 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 994 216 97 0 0 chr12 53735912 53735943 -67521587 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 994 225 108 0 0 chr12 53735981 53736018 -67521512 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 994 1178 83 7 0 chr12 53737942 53738087 -67519443 - B1_Mus1 SINE Alu -1 147 2 3 994 262 204 0 0 chr12 53738809 53738853 -67518677 - tRNA-Ala-GCY_ tRNA tRNA -10 65 22 3 994 441 0 0 0 chr12 53738901 53738950 -67518580 + (A)n Simple_repeat Simple_repeat 1 49 0 3 995 607 272 7 7 chr12 53741337 53741485 -67516045 + RSINE1 SINE B4 2 149 -16 3 995 401 300 104 56 chr12 53742046 53742383 -67515147 + ORR1E LTR MaLR 1 334 -36 3 995 250 191 140 20 chr12 53743127 53743216 -67514314 + PB1D10 SINE Alu 21 118 -2 3 995 1370 217 60 90 chr12 53743781 53744247 -67513283 + Lx9 LINE L1 7191 7642 -2 3 995 27 0 0 0 chr12 53744309 53744336 -67513194 + AT_rich Low_complexity Low_complexity 1 27 0 3 995 2705 244 34 7 chr12 53744533 53745119 -67512411 - Lx6 LINE L1 -5 7455 6854 3 995 311 73 49 0 chr12 53745197 53745238 -67512292 + Lx7 LINE L1 6822 6864 -832 3 995 339 25 0 0 chr12 53745757 53745797 -67511733 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 995 1157 57 43 0 chr12 53746104 53746245 -67511285 + B1_Mus1 SINE Alu 2 148 0 4 995 180 111 0 0 chr12 53746324 53746351 -67511179 + (CATA)n Simple_repeat Simple_repeat 4 30 0 4 995 201 342 23 70 chr12 53746636 53746765 -67510765 + L2a LINE L2 1411 1533 -1886 4 995 640 333 70 20 chr12 53747643 53748044 -67509486 - HERV16-int LTR ERVL -4011 985 565 4 995 971 250 23 31 chr12 53748132 53748392 -67509138 + B4A SINE B4 12 269 -23 4 995 315 0 0 0 chr12 53748393 53748428 -67509102 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 995 279 0 0 0 chr12 53748437 53748468 -67509062 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 4 995 574 64 14 6 chr12 53748469 53748558 -67508972 - B1_Mm SINE Alu -4 145 59 4 995 500 315 37 6 chr12 53748745 53748908 -67508622 - HERV16-int LTR ERVL -4818 178 11 4 995 520 236 19 148 chr12 53749403 53749612 -67507918 + MLT1B LTR MaLR 204 385 -5 4 995 285 29 0 0 chr12 53749765 53749799 -67507731 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 995 244 322 61 0 chr12 53749854 53749969 -67507561 + L2a LINE L2 3017 3138 -288 4 995 4704 68 0 2 chr12 53749972 53750571 -67506959 - L1_Mm LINE L1 -378 5505 4908 4 995 5233 48 3 6 chr12 53750573 53751197 -67506333 + L1Md_F2 LINE L1 5958 6579 -3 4 995 373 279 108 32 chr12 53751279 53751464 -67506066 + L2a LINE L2 3204 3402 -24 4 995 796 279 16 10 chr12 53752327 53752519 -67505011 + B3A SINE B2 1 193 -5 4 995 7613 82 23 21 chr12 53752845 53753444 -67504086 - L1_Mus3 LINE L1 -1 6637 6039 4 995 1301 54 0 0 chr12 53753444 53753591 -67503939 - B1_Mus2 SINE Alu 0 147 1 4 995 25942 145 13 26 chr12 53753591 53759252 -67498278 - L1_Mus3 LINE L1 -600 6038 464 4 995 496 232 101 34 chr12 53759318 53759496 -67498034 - B3A SINE B2 -4 194 5 4 995 590 303 107 72 chr12 53759601 53759946 -67497584 + ORR1E LTR MaLR 3 359 0 4 995 479 251 151 5 chr12 53759950 53760142 -67497388 - L1MB1 LINE L1 -41 6127 5908 4 995 626 247 12 24 chr12 53760355 53760521 -67497009 + MTD LTR MaLR 36 199 -220 4 995 430 308 0 0 chr12 53761121 53761225 -67496305 + PB1D10 SINE Alu 1 104 -13 4 995 1371 132 5 0 chr12 53761563 53761767 -67495763 - Lx2 LINE L1 0 6997 6793 4 995 334 277 116 56 chr12 53761827 53762060 -67495470 - L1MC5 LINE L1 -53 7908 7662 4 995 371 254 99 56 chr12 53762148 53762290 -67495240 + B1F SINE Alu 1 148 -1 4 995 2439 116 99 0 chr12 53762311 53762664 -67494866 - ORR1B1 LTR MaLR -2 392 5 4 995 266 209 0 0 chr12 53762664 53762707 -67494823 + ID4 SINE ID 22 64 -19 4 995 344 244 65 40 chr12 53763128 53763252 -67494278 - L1MC5 LINE L1 -813 7148 7022 4 995 330 221 284 0 chr12 53763342 53763437 -67494093 - B1F SINE Alu -26 123 2 4 995 227 246 48 16 chr12 53763567 53763629 -67493901 - L1MC5 LINE L1 -1078 6883 6820 4 995 24 67 0 0 chr12 53763827 53763872 -67493658 + AT_rich Low_complexity Low_complexity 1 45 0 4 995 947 262 5 5 chr12 53763872 53764079 -67493451 - B3 SINE B2 -9 207 1 4 995 622 230 119 18 chr12 53764248 53764416 -67493114 - B3 SINE B2 0 216 32 4 995 224 276 107 62 chr12 53764631 53764743 -67492787 - L2a LINE L2 -21 3405 3289 4 995 235 329 0 14 chr12 53765091 53765165 -67492365 - MLT2F LTR ERVL -338 325 253 4 995 279 338 26 0 chr12 53765387 53765464 -67492066 + ID2 SINE ID 2 80 -3 4 995 421 304 142 55 chr12 53765764 53765846 -67491684 - B4 SINE B4 0 292 196 4 995 459 0 0 0 chr12 53765846 53765897 -67491633 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 995 421 304 142 55 chr12 53765897 53766033 -67491497 - B4 SINE B4 -97 195 55 4 995 685 201 119 11 chr12 53766862 53767038 -67490492 - RMER12 LTR ERVK 0 1322 1128 4 995 4893 140 12 11 chr12 53767147 53767961 -67489569 - RMER12 LTR ERVK -150 1254 1 4 995 1185 69 0 0 chr12 53768050 53768195 -67489335 + B1_Mus2 SINE Alu 1 145 -2 4 995 707 0 12 0 chr12 53768404 53768487 -67489043 + (TTTC)n Simple_repeat Simple_repeat 2 85 0 4 995 1086 94 132 0 chr12 53768487 53768646 -67488884 - B2_Mm1t SINE B2 -12 181 2 4 995 374 313 26 9 chr12 53768659 53768775 -67488755 - B4A SINE B4 -163 129 12 4 995 386 329 48 42 chr12 53768819 53769122 -67488408 - RLTR15 LTR ERVK -68 291 48 4 995 237 274 48 0 chr12 53769217 53769279 -67488251 - MLT1D LTR MaLR -440 65 1 4 995 245 391 70 20 chr12 53769283 53769484 -67488046 - MLT1L LTR MaLR -252 358 148 4 995 1375 276 112 34 chr12 53769486 53770185 -67487345 + L1MA7 LINE L1 5535 6287 -4 4 995 1317 228 38 41 chr12 53770385 53770678 -67486852 - B4A SINE B4 0 292 1 4 995 230 292 73 36 chr12 53770906 53771016 -67486514 + ORR1E LTR MaLR 101 214 -145 4 995 21 36 0 0 chr12 53771114 53771142 -67486388 + AT_rich Low_complexity Low_complexity 1 28 0 4 995 723 54 0 0 chr12 53771770 53771862 -67485668 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 995 1107 30 0 0 chr12 53771895 53772026 -67485504 - MTA_Mm LTR MaLR -265 131 1 4 995 309 109 0 0 chr12 53772170 53772216 -67485314 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 995 393 22 0 0 chr12 53773559 53773605 -67483925 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 995 287 297 59 0 chr12 53775098 53775199 -67482331 - L1MD3 LINE L1 -1 7994 7888 4 995 225 0 0 0 chr12 53775628 53775653 -67481877 + (T)n Simple_repeat Simple_repeat 1 25 0 4 995 872 270 34 14 chr12 53776601 53776885 -67480645 + Lx7 LINE L1 5572 5897 -1799 4 995 1307 115 22 6 chr12 53776970 53777153 -67480377 + B2_Mm2 SINE B2 2 187 -8 4 995 315 104 0 0 chr12 53777276 53777324 -67480206 + (T)n Simple_repeat Simple_repeat 1 48 0 4 995 474 33 0 0 chr12 53777706 53777766 -67479764 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 4 995 531 279 31 25 chr12 53777768 53777930 -67479600 - RSINE1 SINE B4 -1 164 2 4 995 183 254 15 73 chr12 53778726 53778794 -67478736 + MIR SINE MIR 116 179 -83 4 995 315 321 104 37 chr12 53778760 53779012 -67478518 - MIR SINE MIR 0 262 2 4 995 28 29 0 0 chr12 53779148 53779183 -67478347 + AT_rich Low_complexity Low_complexity 1 35 0 4 995 405 250 53 23 chr12 53779348 53779361 -67478169 - B1_Mur1 SINE Alu -2 147 137 4 995 926 119 13 0 chr12 53779361 53779512 -67478018 + (TTTC)n Simple_repeat Simple_repeat 1 153 0 4 995 405 250 53 23 chr12 53779512 53779629 -67477901 - B1_Mur1 SINE Alu -13 136 14 4 995 821 267 101 40 chr12 53779844 53780191 -67477339 + MTEa LTR MaLR 1 368 -11 4 995 283 204 42 83 chr12 53780521 53780617 -67476913 - MIR SINE MIR -131 131 40 4 995 2922 189 26 33 chr12 53780723 53781561 -67475969 - ORR1C1-int LTR MaLR -520 850 2 4 995 1755 167 0 129 chr12 53781561 53781761 -67475769 - ORR1C1 LTR MaLR 0 378 186 4 995 1995 179 77 14 chr12 53781761 53782175 -67475355 - BGLII_B LTR ERVK 0 441 2 4 995 1755 167 0 129 chr12 53782175 53782375 -67475155 - ORR1C1 LTR MaLR -193 185 32 4 995 1228 54 0 0 chr12 53782375 53782522 -67475008 - B1_Mm SINE Alu 0 147 1 4 995 1755 167 0 129 chr12 53782522 53782554 -67474976 - ORR1C1 LTR MaLR -347 31 1 4 995 333 281 87 87 chr12 53782594 53782777 -67474753 - MLT1A0 LTR MaLR -165 200 18 4 995 257 89 14 43 chr12 53783038 53783108 -67474422 + (TTTTTA)n Simple_repeat Simple_repeat 2 69 0 4 995 234 349 76 112 chr12 53783597 53783794 -67473736 - MLT1K LTR MaLR -359 236 47 4 995 1040 259 46 25 chr12 53784607 53784892 -67472638 + B4A SINE B4 2 292 0 4 995 231 276 0 0 chr12 53784892 53784979 -67472551 + (CA)n Simple_repeat Simple_repeat 1 87 0 4 995 645 257 57 43 chr12 53785365 53785576 -67471954 - B3A SINE B2 -2 214 1 4 995 608 286 48 15 chr12 53785608 53785814 -67471716 - B3 SINE B2 -2 214 2 4 995 970 254 31 0 chr12 53785838 53786062 -67471468 - Lx8 LINE L1 -138 7335 7105 4 995 372 257 10 40 chr12 53786272 53786449 -67471081 + B3 SINE B2 1 216 0 4 995 569 271 115 60 chr12 53787193 53787606 -67469924 + ORR1D-int LTR MaLR 875 1206 -164 4 995 1178 235 85 24 chr12 53789180 53789559 -67467971 - MTD LTR MaLR 0 419 1 4 995 809 127 8 0 chr12 53789685 53789819 -67467711 + (TATATG)n Simple_repeat Simple_repeat 1 135 0 4 995 257 91 45 0 chr12 53790436 53790480 -67467050 - L1_Mm LINE L1 -1382 4501 4456 4 995 5220 70 54 4 chr12 53790446 53791311 -67466219 + L1_Mus1 LINE L1 5674 6581 -1 4 995 215 324 9 35 chr12 53791744 53791859 -67465671 + CT-rich Low_complexity Low_complexity 3 114 0 4 995 295 333 0 0 chr12 53791977 53792076 -67465454 - PB1D10 SINE Alu -17 100 2 4 995 182 293 92 13 chr12 53792100 53792176 -67465354 - MIR SINE MIR -88 174 93 4 995 426 85 0 0 chr12 53792970 53793029 -67464501 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 995 339 231 118 79 chr12 53793679 53793806 -67463724 - LTR87 LTR ERVL? -379 245 114 4 995 22 0 0 0 chr12 53794267 53794289 -67463241 + AT_rich Low_complexity Low_complexity 1 22 0 4 995 180 135 0 0 chr12 53794308 53794345 -67463185 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 4 995 387 60 0 0 chr12 53794379 53794429 -67463101 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 995 311 323 99 19 chr12 53794434 53794595 -67462935 - B3A SINE B2 -23 175 2 4 995 264 344 94 30 chr12 53794631 53794865 -67462665 - ORR1E LTR MaLR -12 347 99 4 995 809 277 28 62 chr12 53794964 53795253 -67462277 - B4A SINE B4 -13 279 1 4 995 4039 155 79 78 chr12 53795320 53796221 -67461309 + RMER19B LTR ERVK 1 902 0 4 995 281 344 31 0 chr12 53796223 53796319 -67461211 - MLT2B3 LTR ERVL -447 107 9 4 995 276 309 63 24 chr12 53796357 53796483 -67461047 - MLT1J2 LTR MaLR -126 322 192 4 995 287 333 0 0 chr12 53796891 53796969 -67460561 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 995 507 322 91 16 chr12 53796977 53797220 -67460310 - B4A SINE B4 -8 284 24 4 995 1115 188 55 0 chr12 53797391 53797593 -67459937 + B3 SINE B2 4 216 0 4 995 1340 87 34 0 chr12 53797961 53798169 -67459361 + ORR1C1 LTR MaLR 1 215 -163 4 995 361 266 16 16 chr12 53798302 53798428 -67459102 - L1MA4 LINE L1 -382 5918 5793 5 995 23 0 0 0 chr12 53798684 53798707 -67458823 + AT_rich Low_complexity Low_complexity 1 23 0 5 995 21 0 0 0 chr12 53801181 53801202 -67456328 + GC_rich Low_complexity Low_complexity 1 21 0 5 995 407 19 19 0 chr12 53802604 53802656 -67454874 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 995 234 351 47 87 chr12 53802930 53803183 -67454347 - MIRb SINE MIR -8 260 18 5 995 29 0 0 0 chr12 53806073 53806102 -67451428 + AT_rich Low_complexity Low_complexity 1 29 0 5 995 1334 99 39 0 chr12 53807051 53807233 -67450297 + B2_Mm2 SINE B2 1 189 -6 5 995 1192 49 0 0 chr12 53807239 53807383 -67450147 + B1_Mus1 SINE Alu 1 144 -4 5 995 273 57 0 0 chr12 53807385 53807420 -67450110 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 995 252 0 0 0 chr12 53807818 53807846 -67449684 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 995 376 292 62 14 chr12 53808347 53808493 -67449037 + B3 SINE B2 64 216 0 5 995 2294 79 82 0 chr12 53809607 53809936 -67447594 + Lx3A LINE L1 6626 6981 0 5 995 23 0 0 0 chr12 53809938 53809961 -67447569 + AT_rich Low_complexity Low_complexity 1 23 0 5 995 253 294 47 12 chr12 53810126 53810212 -67447318 - MLT1A0 LTR MaLR -274 91 3 5 995 933 113 0 0 chr12 53810388 53810529 -67447001 + (TC)n Simple_repeat Simple_repeat 2 142 0 5 995 258 171 40 54 chr12 53810655 53810729 -67446801 - MADE2 DNA Mariner -2 78 6 5 995 328 326 23 8 chr12 53810844 53810974 -67446556 + MIRb SINE MIR 47 178 -90 5 995 22 0 0 0 chr12 53811315 53811337 -67446193 + AT_rich Low_complexity Low_complexity 1 22 0 5 995 882 168 0 32 chr12 53811432 53811586 -67445944 + B1_Mur3 SINE Alu 1 149 0 5 995 192 77 0 0 chr12 53811590 53811616 -67445914 + (A)n Simple_repeat Simple_repeat 1 26 0 5 995 214 178 0 0 chr12 53811810 53811855 -67445675 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 5 995 294 188 11 34 chr12 53812059 53812147 -67445383 + (TATG)n Simple_repeat Simple_repeat 2 87 0 5 995 1206 68 0 0 chr12 53812163 53812310 -67445220 - B1_Mm SINE Alu 0 147 1 5 995 25 31 0 0 chr12 53813922 53813954 -67443576 + AT_rich Low_complexity Low_complexity 1 32 0 5 995 578 320 62 27 chr12 53814257 53814517 -67443013 - LTR82A LTR ERVL -1 871 603 5 995 279 258 30 0 chr12 53814543 53814609 -67442921 - PB1D7 SINE Alu -49 71 4 5 995 222 62 0 0 chr12 53814778 53814810 -67442720 + (T)n Simple_repeat Simple_repeat 1 32 0 5 995 1235 61 0 0 chr12 53814818 53814966 -67442564 - B1_Mus1 SINE Alu 0 148 1 5 995 682 220 25 51 chr12 53815403 53815561 -67441969 + RSINE1 SINE B4 3 156 -9 5 995 207 0 0 0 chr12 53816163 53816186 -67441344 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 995 564 15 0 0 chr12 53816235 53816300 -67441230 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 5 995 200 114 0 28 chr12 53816428 53816464 -67441066 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 5 995 544 323 119 41 chr12 53816851 53817455 -67440075 + L1MC3 LINE L1 6716 7366 -419 5 995 526 259 0 0 chr12 53817455 53817567 -67439963 - ID_B1 SINE B4 -7 217 106 5 995 392 253 170 61 chr12 53817611 53817971 -67439559 + L1MC3 LINE L1 7381 7789 -206 5 995 25 31 0 0 chr12 53818362 53818394 -67439136 + AT_rich Low_complexity Low_complexity 1 32 0 5 995 491 203 102 0 chr12 53818762 53818890 -67438640 - B1F SINE Alu -8 141 1 5 995 3203 219 89 23 chr12 53819263 53820057 -67437473 - RMER1C Other Other -1 1341 495 5 995 255 343 10 0 chr12 53820996 53821095 -67436435 - Charlie4a DNA MER1_type -10 498 399 5 995 318 341 44 7 chr12 53821180 53821200 -67436330 - ID_B1 SINE B4 -2 222 85 5 995 565 230 18 0 chr12 53821200 53821313 -67436217 - B1F SINE Alu -31 118 4 5 995 214 156 43 22 chr12 53821353 53821399 -67436131 - PB1 SINE Alu -3 124 78 5 995 583 281 121 15 chr12 53821473 53821737 -67435793 - Charlie4a DNA MER1_type -196 312 21 5 995 21 0 0 0 chr12 53822407 53822428 -67435102 + AT_rich Low_complexity Low_complexity 1 21 0 5 995 281 26 0 26 chr12 53822814 53822853 -67434677 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 5 995 3711 100 40 11 chr12 53822853 53823407 -67434123 - Lx LINE L1 -15 6639 6070 5 995 465 73 0 24 chr12 53823418 53823502 -67434028 - L1Md_F3 LINE L1 0 6584 6503 5 995 214 308 0 0 chr12 53823721 53823773 -67433757 + PB1D10 SINE Alu 56 107 -10 5 995 282 367 20 0 chr12 53823838 53823936 -67433594 - MER91B DNA Tip100 0 190 91 5 995 210 302 138 11 chr12 53823956 53824043 -67433487 - MER91B DNA Tip100 -69 121 24 5 995 294 129 0 0 chr12 53824573 53824635 -67432895 + (T)n Simple_repeat Simple_repeat 1 62 0 5 995 1652 26 11 0 chr12 53825413 53825604 -67431926 + B2_Mm1a SINE B2 1 193 0 5 995 188 35 35 0 chr12 53825826 53825855 -67431675 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 5 995 634 112 37 12 chr12 53825867 53826029 -67431501 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 5 995 232 227 14 57 chr12 53826029 53826099 -67431431 - L1MC4a LINE L1 -74 7808 7742 5 995 1002 294 26 62 chr12 53826077 53826462 -67431068 + Lx8 LINE L1 7103 7473 0 5 995 1217 315 52 106 chr12 53826471 53827433 -67430097 - L1MD3 LINE L1 -141 7854 6945 5 995 2231 95 54 17 chr12 53831091 53831445 -67426085 - IAPLTR1_Mm LTR ERVK 0 367 1 5 995 24753 18 1 0 chr12 53831449 53834716 -67422814 - IAPEz-int LTR ERVK -3 6478 3209 5 995 7591 77 115 51 chr12 53834714 53835942 -67421588 - IAPEz-int LTR ERVK -5168 1313 8 5 995 2370 95 54 17 chr12 53835942 53836296 -67421234 - IAPLTR1_Mm LTR ERVK 0 367 1 5 995 1398 80 42 16 chr12 53836546 53836736 -67420794 - B2_Mm2 SINE B2 0 195 1 5 995 853 125 43 9 chr12 53836893 53837129 -67420401 + (TG)n Simple_repeat Simple_repeat 1 244 0 5 995 268 286 52 97 chr12 53837129 53837284 -67420246 - RSINE1 SINE B4 0 165 18 5 995 928 92 0 30 chr12 53838182 53838316 -67419214 - B2_Mm2 SINE B2 -60 135 6 5 995 1228 69 7 0 chr12 53838689 53838834 -67418696 + B1_Mus1 SINE Alu 3 148 0 5 995 270 0 0 0 chr12 53838837 53838867 -67418663 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 995 2218 77 0 0 chr12 53839798 53840085 -67417445 - L1Md_F2 LINE L1 -392 6190 5904 5 995 2433 49 21 10 chr12 53840085 53840374 -67417156 + L1_Mus1 LINE L1 6276 6567 0 5 995 410 275 54 18 chr12 53840722 53840833 -67416697 + PB1D10 SINE Alu 2 116 -1 5 995 422 192 196 39 chr12 53840974 53841153 -67416377 + L1MA6 LINE L1 5130 5336 -807 5 995 425 336 7 14 chr12 53841254 53841399 -67416131 + B4A SINE B4 142 285 -7 5 995 241 291 12 12 chr12 53841404 53841484 -67416046 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 995 441 304 29 12 chr12 53841509 53841679 -67415851 + L1M4 LINE L1 5313 5485 -693 5 995 292 212 15 15 chr12 53841722 53841789 -67415741 + L1MA5 LINE L1 6234 6300 0 5 995 1980 294 50 21 chr12 53841796 53842598 -67414932 + L1MA6 LINE L1 5474 6298 -2 5 995 279 275 211 24 chr12 53843338 53843461 -67414069 - MIR SINE MIR -56 206 61 5 995 934 196 136 11 chr12 53843840 53844031 -67413499 - B3 SINE B2 0 216 2 5 995 313 210 0 16 chr12 53844061 53844124 -67413406 - B1F SINE Alu -1 148 87 5 995 304 127 15 31 chr12 53845228 53845293 -67412237 + GA-rich Low_complexity Low_complexity 3 66 0 5 995 254 249 14 21 chr12 53845795 53845852 -67411678 + ID4_ SINE ID 11 70 -13 5 995 424 264 78 23 chr12 53845851 53845877 -67411653 + B1F SINE Alu 14 110 -39 5 995 512 194 0 11 chr12 53845877 53845971 -67411559 + ID_B1 SINE B4 126 218 -6 5 995 183 42 0 0 chr12 53846120 53846144 -67411386 + (C)n Simple_repeat Simple_repeat 1 24 0 5 995 1232 166 36 14 chr12 53847155 53847375 -67410155 - URR1B DNA MER1_type 0 225 1 5 995 306 0 0 0 chr12 53847662 53847696 -67409834 + (T)n Simple_repeat Simple_repeat 1 34 0 5 995 321 286 198 0 chr12 53848416 53848542 -67408988 + B3A SINE B2 1 151 -47 5 995 426 39 0 0 chr12 53848552 53848604 -67408926 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 995 321 234 216 8 chr12 53848610 53848735 -67408795 + MIR SINE MIR 80 230 -32 5 995 293 318 38 11 chr12 53849359 53849472 -67408058 + PB1D10 SINE Alu 9 128 -21 5 995 410 246 14 0 chr12 53849483 53849581 -67407949 + ID4_ SINE ID 8 111 -41 5 995 324 0 0 0 chr12 53849594 53849630 -67407900 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 995 409 320 163 35 chr12 53849931 53850219 -67407311 - MamRep137 DNA TcMar? -25 419 95 5 995 1118 110 0 6 chr12 53850343 53850517 -67407013 + (TTC)n Simple_repeat Simple_repeat 2 174 0 5 995 1360 222 168 19 chr12 53852270 53852633 -67404897 + MTD LTR MaLR 3 419 0 5 995 1718 187 39 70 chr12 53854683 53855069 -67402461 - ORR1D1 LTR MaLR 0 374 1 5 995 228 377 0 9 chr12 53855403 53855518 -67402012 + GA-rich Low_complexity Low_complexity 2 115 0 5 995 47 44 0 0 chr12 53855753 53855821 -67401709 + AT_rich Low_complexity Low_complexity 1 68 0 5 995 203 382 32 24 chr12 53855894 53856020 -67401510 - MIR3 SINE MIR -67 141 15 5 995 596 224 131 33 chr12 53856897 53857251 -67400279 - L1MEc LINE L1 -3922 2478 2098 5 995 376 33 0 62 chr12 53857274 53857338 -67400192 + (TATAA)n Simple_repeat Simple_repeat 3 62 0 5 995 423 349 68 6 chr12 53857567 53857743 -67399787 + MER2 DNA MER2_type 1 187 -158 5 995 579 308 0 56 chr12 53857752 53857931 -67399599 + B3A SINE B2 26 194 -4 5 995 348 43 0 0 chr12 53857945 53857991 -67399539 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 995 279 342 42 17 chr12 53857991 53858110 -67399420 + MER2 DNA MER2_type 221 342 -3 5 995 331 372 61 24 chr12 53858110 53858407 -67399123 - L1MEc LINE L1 -4536 1879 1572 5 995 21 0 0 0 chr12 53859499 53859520 -67398010 + AT_rich Low_complexity Low_complexity 1 21 0 5 995 1813 253 127 24 chr12 53859907 53860774 -67396756 + L1MC LINE L1 3738 4693 -1453 5 995 299 246 107 25 chr12 53860774 53860895 -67396635 + RMER12 LTR ERVK 722 852 -470 5 995 828 253 82 44 chr12 53861090 53861541 -67395989 + L1MC LINE L1 4956 5424 -909 5 995 416 252 108 0 chr12 53861735 53861846 -67395684 - MTEa LTR MaLR -4 375 253 5 995 1532 195 60 7 chr12 53862421 53862705 -67394825 - MTD LTR MaLR 0 419 121 6 995 541 281 85 97 chr12 53862863 53863027 -67394503 + L1MC4a LINE L1 6747 6924 -958 6 995 1179 217 0 0 chr12 53863027 53863234 -67394296 + B3 SINE B2 1 207 -9 6 995 541 281 85 97 chr12 53863234 53863471 -67394059 + L1MC4a LINE L1 6925 7143 -739 6 995 519 271 232 41 chr12 53863571 53863964 -67393566 + L1MC4a LINE L1 7413 7880 -2 6 995 365 233 128 43 chr12 53864916 53865010 -67392520 - PB1D10 SINE Alu -4 123 22 6 995 1002 235 125 75 chr12 53865274 53865633 -67391897 + MTE2b LTR MaLR 1 377 -2 6 995 247 328 32 48 chr12 53866446 53866571 -67390959 - L1MEd LINE L1 -5683 436 314 6 995 333 0 0 0 chr12 53866635 53866672 -67390858 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 995 197 311 85 43 chr12 53867047 53867141 -67390389 - MER5A DNA MER1_type -3 186 89 6 995 526 284 36 45 chr12 53867204 53867425 -67390105 + MLT1L LTR MaLR 186 404 -206 6 995 759 140 0 32 chr12 53868277 53868432 -67389098 + T-rich Low_complexity Low_complexity 3 152 0 6 995 702 187 0 0 chr12 53868764 53869091 -67388439 + CT-rich Low_complexity Low_complexity 1 327 0 6 995 823 191 37 0 chr12 53869122 53869258 -67388272 - B1_Mur4 SINE Alu -6 144 4 6 995 447 268 20 92 chr12 53869313 53869465 -67388065 - ID_B1 SINE B4 -20 204 64 6 995 924 79 0 0 chr12 53869486 53869612 -67387918 + (TCCCC)n Simple_repeat Simple_repeat 4 129 0 6 995 318 26 0 0 chr12 53869615 53869654 -67387876 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 995 525 280 18 77 chr12 53869704 53869874 -67387656 - B4A SINE B4 -127 165 6 6 124 554 298 81 18 chr12 53870429 53870651 -67386879 + MIR SINE MIR 11 246 -16 6 996 32 57 0 0 chr12 53870957 53871010 -67386520 + AT_rich Low_complexity Low_complexity 1 53 0 6 996 332 244 34 0 chr12 53871550 53871669 -67385861 + (TA)n Simple_repeat Simple_repeat 1 123 0 6 996 1762 171 59 20 chr12 53871855 53872213 -67385317 + RLTR30 LTR ERV1 8 379 0 6 996 258 32 0 0 chr12 53872456 53872487 -67385043 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 6 996 378 0 0 0 chr12 53872487 53872529 -67385001 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 996 567 243 36 0 chr12 53872572 53872712 -67384818 - RSINE1 SINE B4 -17 148 4 6 996 673 309 39 24 chr12 53872713 53873045 -67384485 - MER97a DNA MER1_type? -29 865 529 6 996 257 276 105 0 chr12 53873307 53873412 -67384118 - MER97a DNA MER1_type? -733 161 46 6 996 307 188 17 0 chr12 53874607 53874724 -67382806 + (TG)n Simple_repeat Simple_repeat 1 119 0 6 996 519 201 19 0 chr12 53874740 53874899 -67382631 + (TG)n Simple_repeat Simple_repeat 1 162 0 6 996 564 173 29 9 chr12 53876569 53876674 -67380856 - B1_Mur4 SINE Alu -1 149 43 6 996 243 307 0 10 chr12 53876676 53876778 -67380752 + CT-rich Low_complexity Low_complexity 3 103 0 6 996 623 294 102 15 chr12 53876790 53876987 -67380543 + MER20 DNA MER1_type 6 219 0 6 996 1346 256 67 63 chr12 53877458 53877999 -67379531 + L1MA4 LINE L1 3526 4068 -2075 6 996 269 295 22 11 chr12 53878017 53878106 -67379424 - RSINE1 SINE B4 -64 101 12 6 996 874 251 65 32 chr12 53878107 53878445 -67379085 + L1MA4 LINE L1 5348 5696 -604 6 996 418 271 60 0 chr12 53878488 53878621 -67378909 + L1MA4 LINE L1 5800 5940 -360 6 996 193 67 65 32 chr12 53878622 53878684 -67378846 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 6 996 306 20 59 0 chr12 53879205 53879256 -67378274 + (CAA)n Simple_repeat Simple_repeat 1 54 0 6 996 1236 61 0 0 chr12 53879341 53879488 -67378042 + B1_Mm SINE Alu 1 147 0 6 996 386 187 5 45 chr12 53880017 53880137 -67377393 - MTD LTR MaLR -14 405 280 6 996 1841 209 41 14 chr12 53880364 53880733 -67376797 - MTE2b LTR MaLR 0 379 1 6 996 1927 243 99 40 chr12 53881084 53881915 -67375615 - L1MB3 LINE L1 -116 6067 5176 6 996 243 0 0 0 chr12 53881915 53881942 -67375588 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 996 327 257 107 23 chr12 53881942 53881993 -67375537 - L1MB3 LINE L1 -971 5175 5121 6 996 21 0 0 0 chr12 53882278 53882299 -67375231 + GC_rich Low_complexity Low_complexity 1 21 0 6 996 4681 245 35 19 chr12 53882469 53883606 -67373924 + Lx9 LINE L1 6485 7639 -5 6 996 364 118 29 0 chr12 53885486 53885554 -67371976 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 996 1217 206 200 61 chr12 53885562 53885840 -67371690 - Lx7 LINE L1 -3 7693 7365 6 996 288 0 0 0 chr12 53885840 53885872 -67371658 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 996 1217 206 200 61 chr12 53885872 53886054 -67371476 - Lx7 LINE L1 -332 7364 7169 6 996 2757 197 121 2 chr12 53886142 53886765 -67370765 + RMER1A Other Other 100 781 -249 6 996 594 92 31 0 chr12 53886778 53886876 -67370654 - Lx2 LINE L1 0 6997 6897 6 996 422 133 0 11 chr12 53886926 53887017 -67370513 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 6 996 1709 281 106 25 chr12 53887047 53887931 -67369599 - L1MA4 LINE L1 -7 6293 5338 6 996 266 261 43 0 chr12 53888024 53888093 -67369437 + B4A SINE B4 8 79 -213 6 996 204 135 0 0 chr12 53889136 53889173 -67368357 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 6 996 243 277 15 0 chr12 53893353 53893418 -67364112 - MIR3 SINE MIR -49 159 94 6 996 335 309 31 0 chr12 53894167 53894264 -67363266 + ID_B1 SINE B4 110 209 -15 6 996 222 295 10 21 chr12 53894264 53894361 -67363169 + G-rich Low_complexity Low_complexity 4 99 0 6 996 396 0 0 0 chr12 53894570 53894614 -67362916 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 6 996 1388 184 45 111 chr12 53894614 53894694 -67362836 + MTD LTR MaLR 23 102 -317 6 996 740 91 9 0 chr12 53894694 53894804 -67362726 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 6 996 1388 184 45 111 chr12 53894804 53894840 -67362690 + MTD LTR MaLR 103 113 -306 6 996 1501 150 36 14 chr12 53894840 53895118 -67362412 - Lx2B LINE L1 -12 6988 6705 6 996 1388 184 45 111 chr12 53895118 53895404 -67362126 + MTD LTR MaLR 114 399 -20 6 996 447 340 39 75 chr12 53896226 53896614 -67360916 - MLT1J LTR MaLR -117 395 22 6 996 189 0 0 0 chr12 53897931 53897952 -67359578 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 6 996 2157 194 19 7 chr12 53898124 53898540 -67358990 - MTC LTR MaLR 0 421 1 6 996 231 310 11 35 chr12 53898562 53898649 -67358881 + GA-rich Low_complexity Low_complexity 5 89 0 6 996 1082 33 0 90 chr12 53899067 53899233 -67358297 + L1Md_F3 LINE L1 6422 6572 -12 6 996 1315 90 6 17 chr12 53899301 53899481 -67358049 + B2_Mm1t SINE B2 2 179 -14 6 996 330 125 14 18 chr12 53899527 53899593 -67357937 + B2_Mm2 SINE B2 46 116 -82 6 996 297 0 0 0 chr12 53899608 53899641 -67357889 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 6 996 229 191 0 0 chr12 53899654 53899701 -67357829 + A-rich Low_complexity Low_complexity 2 48 0 6 996 28 48 0 0 chr12 53899701 53899743 -67357787 + AT_rich Low_complexity Low_complexity 1 42 0 6 996 290 268 26 35 chr12 53900529 53900645 -67356885 - RMER20A LTR ERVK -164 352 238 6 996 378 0 0 0 chr12 53901841 53901883 -67355647 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 996 735 283 13 25 chr12 53902592 53902837 -67354693 + B4 SINE B4 1 244 -48 6 996 1637 173 50 21 chr12 53903158 53903443 -67354087 - ORR1C1 LTR MaLR -31 347 52 6 996 3488 52 28 5 chr12 53903443 53903869 -67353661 - RLTR10C LTR ERVK 0 436 1 6 996 1637 173 50 21 chr12 53903869 53903920 -67353610 - ORR1C1 LTR MaLR -327 51 1 6 996 449 287 83 0 chr12 53905914 53906071 -67351459 + MLT1A0 LTR MaLR 151 320 -45 6 996 295 224 116 12 chr12 53906714 53906800 -67350730 - ID_B1 SINE B4 -1 223 129 6 996 1093 229 0 0 chr12 53907332 53907546 -67349984 + B3 SINE B2 1 214 -2 6 996 2026 148 56 19 chr12 53907979 53908357 -67349173 + ORR1B1 LTR MaLR 3 394 0 6 996 200 312 31 0 chr12 53909075 53909139 -67348391 - MER5B DNA MER1_type -3 175 110 6 996 25 31 0 0 chr12 53909378 53909410 -67348120 + AT_rich Low_complexity Low_complexity 1 32 0 6 996 2388 165 12 24 chr12 53909415 53909508 -67348022 + MTC LTR MaLR 5 97 -324 6 996 1262 34 0 0 chr12 53909508 53909655 -67347875 + B1_Mm SINE Alu 1 147 0 6 996 2388 165 12 24 chr12 53909655 53909983 -67347547 + MTC LTR MaLR 98 421 0 6 996 1408 142 45 77 chr12 53909983 53910143 -67347387 + MTC-int LTR MaLR 1 164 -1094 6 996 1190 61 7 0 chr12 53910143 53910290 -67347240 + B1_Mus1 SINE Alu 1 148 0 6 996 243 0 0 0 chr12 53910292 53910319 -67347211 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 996 1408 142 45 77 chr12 53910319 53910491 -67347039 + MTC-int LTR MaLR 165 325 -933 6 996 1604 188 10 0 chr12 53910498 53910790 -67346740 + MTC LTR MaLR 127 421 0 6 996 25 31 0 0 chr12 53910875 53910907 -67346623 + AT_rich Low_complexity Low_complexity 1 32 0 6 996 1173 61 0 33 chr12 53913594 53913747 -67343783 + B1_Mus1 SINE Alu 1 148 0 6 996 330 266 13 0 chr12 53914061 53914140 -67343390 - ID4 SINE ID -2 81 2 6 996 371 202 0 11 chr12 53914590 53914685 -67342845 + CT-rich Low_complexity Low_complexity 3 96 0 6 996 214 250 21 0 chr12 53914708 53914756 -67342774 + CT-rich Low_complexity Low_complexity 4 52 0 6 996 458 108 14 0 chr12 53914760 53914834 -67342696 + (TCC)n Simple_repeat Simple_repeat 2 76 0 6 996 421 269 0 0 chr12 53915191 53915299 -67342231 - MIRm SINE MIR -120 156 49 6 996 23 33 0 0 chr12 53915499 53915529 -67342001 + AT_rich Low_complexity Low_complexity 1 30 0 6 996 1334 283 78 13 chr12 53915529 53915781 -67341749 - Lx7 LINE L1 -233 7240 6942 6 996 360 0 0 0 chr12 53915781 53915821 -67341709 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 996 1334 275 58 11 chr12 53915821 53916056 -67341474 - Lx7 LINE L1 -755 6941 6699 6 996 560 138 156 0 chr12 53916204 53916313 -67341217 - B1_Mur3 SINE Alu -13 136 11 6 996 490 305 0 0 chr12 53916820 53916951 -67340579 - RSINE1 SINE B4 -31 134 4 6 996 604 273 32 46 chr12 53917109 53917328 -67340202 - ID_B1 SINE B4 -7 217 2 6 996 186 340 110 26 chr12 53917645 53917799 -67339731 + MIRb SINE MIR 49 215 -53 6 996 444 322 89 32 chr12 53918392 53918639 -67338891 + B4A SINE B4 6 266 -26 6 996 366 23 0 0 chr12 53918670 53918713 -67338817 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 996 555 242 0 59 chr12 53918908 53919044 -67338486 - B4 SINE B4 -161 131 4 6 996 245 330 0 21 chr12 53919119 53919137 -67338393 - BC1_Mm scRNA scRNA -61 91 1 6 996 278 333 0 0 chr12 53919137 53919212 -67338318 - ID SINE ID -149 75 1 6 996 373 183 0 35 chr12 53920044 53920129 -67337401 - MER3 DNA MER1_type -5 204 123 6 996 886 259 62 31 chr12 53921609 53921900 -67335630 - Lx8 LINE L1 -2 7471 7172 6 996 1011 254 61 11 chr12 53922357 53922636 -67334894 - Lx8 LINE L1 -298 7175 6883 6 996 34 24 0 0 chr12 53922989 53923030 -67334500 + AT_rich Low_complexity Low_complexity 1 41 0 7 996 217 219 0 0 chr12 53923123 53923164 -67334366 + RSINE1 SINE B4 13 53 -112 7 996 375 23 0 0 chr12 53923222 53923266 -67334264 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 996 244 313 96 32 chr12 53924239 53924292 -67333238 + L1M2 LINE L1 4791 4849 -1294 7 996 594 118 0 0 chr12 53924292 53924385 -67333145 + (CAT)n Simple_repeat Simple_repeat 2 94 0 7 996 244 313 96 32 chr12 53924385 53924519 -67333011 + L1M2 LINE L1 4850 4990 -1153 7 996 532 144 33 31 chr12 53924717 53924845 -67332685 + ORR1D1 LTR MaLR 259 374 -20 7 996 254 287 139 0 chr12 53925195 53925296 -67332234 + Charlie19a DNA Charlie 64 178 -208 7 996 7429 35 8 0 chr12 53926381 53927250 -67330280 - L1Md_T LINE L1 -2 6580 5705 7 996 308 188 86 14 chr12 53927310 53927380 -67330150 - ID2 SINE ID -7 76 2 7 996 275 256 0 11 chr12 53927389 53927480 -67330050 + CT-rich Low_complexity Low_complexity 3 92 0 7 996 207 0 0 0 chr12 53927517 53927540 -67329990 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 996 496 305 8 30 chr12 53927548 53927680 -67329850 + B1_Mur1 SINE Alu 1 129 -20 7 996 732 139 0 0 chr12 53927681 53927825 -67329705 + (TAGA)n Simple_repeat Simple_repeat 2 145 0 7 996 475 302 19 19 chr12 53927842 53928004 -67329526 + RSINE1 SINE B4 4 165 0 7 996 654 262 54 0 chr12 53928378 53928527 -67329003 - B3A SINE B2 -41 157 1 7 996 718 276 63 52 chr12 53928834 53929121 -67328409 + B4A SINE B4 3 292 0 7 996 234 0 0 0 chr12 53929197 53929223 -67328307 + (A)n Simple_repeat Simple_repeat 1 26 0 7 996 546 308 14 0 chr12 53929242 53929388 -67328142 + B1_Mur1 SINE Alu 1 148 -1 7 996 245 250 29 0 chr12 53929389 53929457 -67328073 + GA-rich Low_complexity Low_complexity 3 72 0 7 996 351 44 0 0 chr12 53929586 53929631 -67327899 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 996 183 205 0 0 chr12 53929640 53929679 -67327851 + GA-rich Low_complexity Low_complexity 3 41 0 7 996 376 296 25 19 chr12 53929711 53929873 -67327657 + L1ME1 LINE L1 5802 5964 -215 7 996 252 0 0 0 chr12 53930507 53930535 -67326995 + (A)n Simple_repeat Simple_repeat 1 28 0 7 996 446 190 123 0 chr12 53932271 53932434 -67325096 + RMER17C LTR ERVK 89 271 -139 7 996 180 0 0 0 chr12 53932436 53932456 -67325074 + (A)n Simple_repeat Simple_repeat 1 20 0 7 996 338 270 0 98 chr12 53932544 53932667 -67324863 + B4 SINE B4 34 144 -148 7 996 342 0 0 0 chr12 53932786 53932824 -67324706 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 996 265 344 44 6 chr12 53933938 53934096 -67323434 + MER5A1 DNA MER1_type 1 164 -2 7 996 324 0 0 0 chr12 53934530 53934566 -67322964 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 996 510 17 0 0 chr12 53934566 53934624 -67322906 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 996 21 36 0 0 chr12 53937648 53937676 -67319854 + AT_rich Low_complexity Low_complexity 1 28 0 7 996 480 259 72 29 chr12 53937904 53937915 -67319615 + CYRA11_Mm Unknown Y-chromosome 160 216 -401 7 996 944 130 53 6 chr12 53937915 53938085 -67319445 - URR1A DNA MER1_type -1 225 48 7 996 480 259 72 29 chr12 53938085 53938111 -67319419 + CYRA11_Mm Unknown Y-chromosome 217 375 -242 7 996 342 61 0 0 chr12 53938454 53938503 -67319027 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 996 514 277 70 14 chr12 53939528 53939671 -67317859 - B3 SINE B2 -19 197 47 7 996 255 248 28 37 chr12 53940609 53940718 -67316812 + (TATG)n Simple_repeat Simple_repeat 4 111 0 7 996 491 108 24 0 chr12 53940725 53940808 -67316722 + (CATA)n Simple_repeat Simple_repeat 2 86 0 7 996 987 229 159 168 chr12 53940808 53941249 -67316281 - MT2A LTR ERVL -96 437 1 7 996 393 325 93 16 chr12 53941256 53941450 -67316080 + MIR SINE MIR 43 251 -11 7 996 501 226 104 0 chr12 53941701 53941816 -67315714 + ID_B1 SINE B4 91 217 -7 7 996 235 280 89 51 chr12 53942943 53943022 -67314508 + RSINE1 SINE B4 62 143 -22 7 996 854 248 110 16 chr12 53943100 53943354 -67314176 + B4A SINE B4 9 286 -6 7 996 239 54 27 0 chr12 53943531 53943568 -67313962 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 7 996 2902 96 26 9 chr12 53943568 53943991 -67313539 - Lx3A LINE L1 -13 6968 6539 7 996 438 344 114 18 chr12 53944156 53944384 -67313146 + MLT1A0 LTR MaLR 105 354 -11 7 996 814 306 75 13 chr12 53944404 53944791 -67312739 + MLT1A0-int LTR MaLR 6 416 -1319 7 996 2019 181 90 35 chr12 53944829 53945374 -67312156 + L1_Rod LINE L1 4724 5298 -549 7 996 5098 48 5 0 chr12 53945372 53945991 -67311539 + L1Md_F2 LINE L1 4965 5586 -297 7 996 7213 95 3 6 chr12 53945992 53946971 -67310559 + L1Md_F2 LINE L1 5588 6564 -18 7 996 423 0 0 0 chr12 53946971 53947018 -67310512 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 996 252 269 174 0 chr12 53947069 53947218 -67310312 + MLT1A0-int LTR MaLR 475 649 -1086 7 996 398 217 19 11 chr12 53947244 53947346 -67310184 + MLT1A0 LTR MaLR 276 363 -2 7 996 639 225 16 161 chr12 53947568 53947817 -67309713 - B3 SINE B2 0 216 4 7 996 1464 257 49 79 chr12 53948901 53949501 -67308029 + RMER1B Other Other 1 534 -532 7 996 790 252 117 0 chr12 53949515 53949729 -67307801 - RMER1A Other Other -744 286 48 7 996 1764 130 75 16 chr12 53949750 53950056 -67307474 + RMER1A Other Other 704 1027 -3 7 996 278 276 51 0 chr12 53950654 53950752 -67306778 - L1ME3A LINE L1 -212 5961 5859 7 996 408 82 0 0 chr12 53950866 53950927 -67306603 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 996 399 331 128 26 chr12 53950933 53951317 -67306213 - L1MEg LINE L1 -5661 423 1 7 996 362 246 92 17 chr12 53952172 53952292 -67305238 - MTD LTR MaLR 0 419 291 7 996 477 0 0 0 chr12 53952782 53952835 -67304695 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 996 351 0 0 0 chr12 53952835 53952873 -67304657 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 996 23 0 0 0 chr12 53953372 53953395 -67304135 + AT_rich Low_complexity Low_complexity 1 23 0 7 996 180 125 0 0 chr12 53953463 53953495 -67304035 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 7 996 728 42 10 0 chr12 53956587 53956683 -67300847 + (TA)n Simple_repeat Simple_repeat 2 98 0 7 996 213 226 0 0 chr12 53957106 53957159 -67300371 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 996 544 234 36 107 chr12 53957159 53957355 -67300175 - B3A SINE B2 -16 182 1 7 996 609 303 84 49 chr12 53957580 53958197 -67299333 - L1M5 LINE L1 -3204 2942 2304 7 996 241 337 0 59 chr12 53958407 53958492 -67299038 + MamRep1894 DNA hAT 7 86 -37 7 996 315 49 0 0 chr12 53959162 53959203 -67298327 + (ACTG)n Simple_repeat Simple_repeat 4 44 0 7 996 1055 120 51 66 chr12 53959590 53959786 -67297744 - B2_Mm2 SINE B2 -1 194 2 7 996 617 222 25 30 chr12 53959796 53959974 -67297556 - B3 SINE B2 -8 187 15 7 996 5951 42 8 32 chr12 53960111 53960883 -67296647 - L1_Mm LINE L1 -946 4937 4185 7 996 1577 48 38 5 chr12 53960883 53961093 -67296437 + L1Md_F3 LINE L1 6368 6584 0 7 996 385 295 33 8 chr12 53961359 53961477 -67296053 + B1F1 SINE Alu 5 127 0 7 996 25 0 0 0 chr12 53962597 53962622 -67294908 + AT_rich Low_complexity Low_complexity 1 25 0 7 996 828 137 34 48 chr12 53962666 53962812 -67294718 - B1_Mm SINE Alu 0 147 4 7 996 389 180 70 128 chr12 53963799 53963971 -67293559 - MER33 DNA MER1_type 0 324 163 7 996 1010 199 63 0 chr12 53963980 53964171 -67293359 + B3 SINE B2 7 209 -7 7 996 22 56 0 0 chr12 53965822 53965858 -67291672 + AT_rich Low_complexity Low_complexity 1 36 0 7 996 23 0 0 0 chr12 53965878 53965901 -67291629 + AT_rich Low_complexity Low_complexity 1 23 0 7 996 866 185 217 0 chr12 53966044 53966228 -67291302 - URR1A DNA MER1_type -1 225 2 7 996 23 54 0 0 chr12 53966238 53966275 -67291255 + AT_rich Low_complexity Low_complexity 1 37 0 7 996 450 165 141 15 chr12 53966353 53966488 -67291042 - Lx9 LINE L1 0 7644 7493 7 996 1485 65 0 16 chr12 53966540 53966728 -67290802 - B2_Mm2 SINE B2 -9 186 2 7 996 3336 141 153 53 chr12 53967017 53967887 -67289643 - RLTR13D3 LTR ERVK 0 1114 1 7 996 195 203 0 0 chr12 53968038 53968107 -67289423 + GA-rich Low_complexity Low_complexity 2 70 0 7 996 580 261 28 21 chr12 53968126 53968271 -67289259 + RSINE1 SINE B4 3 148 -17 7 996 386 319 69 0 chr12 53968635 53968779 -67288751 - B3 SINE B2 -5 211 58 7 996 22 88 0 0 chr12 53971679 53971736 -67285794 + AT_rich Low_complexity Low_complexity 1 57 0 7 996 928 118 7 0 chr12 53972186 53972330 -67285200 + URR1A DNA MER1_type 76 220 -6 7 996 1436 84 0 45 chr12 53973717 53973917 -67283613 + B2_Mm2 SINE B2 1 191 -4 7 996 1653 93 4 4 chr12 53974936 53975174 -67282356 + L1_Mus4 LINE L1 6399 6636 0 7 996 287 250 60 0 chr12 53977159 53977243 -67280287 - Charlie13a DNA Charlie -749 765 677 7 996 274 333 47 42 chr12 53977310 53977501 -67280029 - Charlie13a DNA Charlie -935 579 388 7 996 309 155 0 0 chr12 53977685 53977743 -67279787 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 996 181 194 0 0 chr12 53979498 53979529 -67278001 - MER5B DNA MER1_type -11 167 137 7 996 3034 66 38 2 chr12 53979652 53980045 -67277485 - MTB_Mm LTR MaLR 0 407 1 7 996 831 208 61 20 chr12 53982197 53982393 -67275137 + B3 SINE B2 2 205 -11 7 996 22 0 0 0 chr12 53983386 53983408 -67274122 + AT_rich Low_complexity Low_complexity 1 22 0 7 996 1193 283 114 22 chr12 53984728 53985219 -67272311 - Lx8 LINE L1 -2 7471 6936 7 996 537 243 50 66 chr12 53985218 53985399 -67272131 - Lx8 LINE L1 -1132 6341 6164 7 996 459 0 0 0 chr12 53985834 53985885 -67271645 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 996 529 326 0 0 chr12 53985888 53986029 -67271501 - RSINE1 SINE B4 -16 149 9 7 996 208 375 10 10 chr12 53986034 53986131 -67271399 - MIRc SINE MIR -114 154 58 7 996 564 15 0 0 chr12 53986205 53986270 -67271260 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 996 234 0 0 0 chr12 53986283 53986309 -67271221 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 8 996 187 202 16 189 chr12 53990364 53990486 -67267044 - MIRb SINE MIR -124 144 44 8 996 1170 208 116 14 chr12 53990943 53991280 -67266250 - Lx9 LINE L1 -2 7642 7148 8 996 1254 34 0 0 chr12 53991841 53991987 -67265543 + B1_Mm SINE Alu 2 147 0 8 996 243 275 0 14 chr12 53992177 53992247 -67265283 - ID4 SINE ID -12 71 3 8 996 361 319 66 7 chr12 53992249 53992385 -67265145 + MER58A DNA MER1_type 52 195 -29 8 996 3257 56 2 28 chr12 53992531 53992953 -67264577 + L1_Mus2 LINE L1 6156 6566 0 8 996 191 159 57 92 chr12 53993007 53993083 -67264447 - MIRb SINE MIR -117 151 58 8 996 315 0 0 0 chr12 53993321 53993356 -67264174 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 996 309 245 32 0 chr12 53994051 53994145 -67263385 - L1MB2 LINE L1 -45 6126 6030 8 996 646 203 149 0 chr12 53994148 53994296 -67263234 - URR1B DNA MER1_type 0 225 56 8 996 787 240 74 43 chr12 53994615 53994941 -67262589 - ORR1E LTR MaLR -15 344 9 8 996 366 294 81 64 chr12 53995432 53995668 -67261862 - MER102a DNA MER1_type -3 327 88 8 996 240 394 6 48 chr12 53995841 53995960 -67261570 + MER5B DNA MER1_type 3 116 -62 8 996 461 260 57 25 chr12 53995960 53996118 -67261412 + RSINE1 SINE B4 3 165 0 8 996 240 394 6 48 chr12 53996118 53996166 -67261364 + MER5B DNA MER1_type 117 163 -15 8 996 1192 48 0 7 chr12 53996294 53996440 -67261090 + B1_Mus2 SINE Alu 3 147 0 8 996 916 18 64 23 chr12 53997021 53997195 -67260335 + (TG)n Simple_repeat Simple_repeat 1 185 -182 8 996 227 158 61 31 chr12 53997195 53997205 -67260325 + (GTGTG)n Simple_repeat Simple_repeat 1 10 0 8 996 916 18 64 23 chr12 53997205 53997374 -67260156 + (TG)n Simple_repeat Simple_repeat 186 367 0 8 996 227 158 61 31 chr12 53997374 53997445 -67260085 + (GTGTG)n Simple_repeat Simple_repeat 3 75 0 8 996 1105 6 34 28 chr12 53997445 53997624 -67259906 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 996 227 158 61 31 chr12 53997624 53997639 -67259891 + (GTGTG)n Simple_repeat Simple_repeat 2 17 0 8 996 212 184 20 0 chr12 53997809 53997858 -67259672 + GA-rich Low_complexity Low_complexity 2 51 0 8 996 302 266 42 49 chr12 53997877 53998057 -67259473 - RSINE1 SINE B4 -118 174 2 8 996 421 305 43 0 chr12 53998444 53998585 -67258945 - B1F SINE Alu 0 149 3 8 996 26 50 0 0 chr12 53999663 53999703 -67257827 + AT_rich Low_complexity Low_complexity 1 40 0 8 996 235 391 7 95 chr12 54000048 54000195 -67257335 + MIR SINE MIR 8 141 -121 1 996 405 281 61 0 chr12 54000202 54000316 -67257214 + B1F SINE Alu 26 146 -3 2 996 1040 71 50 0 chr12 54000935 54001075 -67256455 + B1_Mm SINE Alu 1 147 0 3 997 1171 270 132 8 chr12 54001806 54002176 -67255354 + MTD LTR MaLR 3 418 -1 4 997 325 364 106 26 chr12 54002206 54002471 -67255059 + L2b LINE L2 2722 3007 -412 5 997 321 312 10 10 chr12 54002638 54002735 -67254795 + Charlie1 DNA MER1_type 2 98 -2683 6 997 419 244 125 15 chr12 54002754 54002954 -67254576 + Charlie1 DNA MER1_type 2434 2655 -126 6 997 199 292 118 59 chr12 54003569 54003671 -67253859 + L2b LINE L2 3253 3360 -15 5 997 3153 105 18 93 chr12 54003676 54004235 -67253295 - L1_Mus2 LINE L1 -925 5641 5129 7 997 232 327 13 45 chr12 54005019 54005173 -67252357 + GA-rich Low_complexity Low_complexity 3 151 0 8 997 254 333 0 0 chr12 54005360 54005429 -67252101 + MIR SINE MIR 78 146 -116 9 997 1089 178 86 0 chr12 54005547 54005744 -67251786 + B3 SINE B2 2 215 -1 1 997 882 139 0 0 chr12 54007245 54007495 -67250035 + (TG)n Simple_repeat Simple_repeat 1 250 0 1 997 441 268 80 13 chr12 54007531 54007682 -67249848 - B4A SINE B4 -18 274 114 1 997 432 254 8 33 chr12 54008486 54008608 -67248922 - Lx8 LINE L1 -430 7043 6925 1 997 194 276 5 31 chr12 54010130 54010215 -67247315 + L2a LINE L2 3294 3426 0 1 997 245 250 13 0 chr12 54011845 54011921 -67245609 + GA-rich Low_complexity Low_complexity 2 78 0 1 997 264 77 0 0 chr12 54012609 54012648 -67244882 + (CAAAC)n Simple_repeat Simple_repeat 5 43 0 1 997 23 0 0 0 chr12 54013342 54013365 -67244165 + AT_rich Low_complexity Low_complexity 1 23 0 1 997 225 94 0 0 chr12 54014102 54014134 -67243396 + (TTC)n Simple_repeat Simple_repeat 2 33 0 1 997 414 0 0 0 chr12 54014872 54014918 -67242612 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 997 332 292 86 90 chr12 54015958 54016214 -67241316 - L1ME1 LINE L1 -1 6178 5924 2 997 361 202 0 20 chr12 54016892 54016984 -67240546 - B1F SINE Alu -4 143 61 2 997 839 199 157 0 chr12 54017145 54017336 -67240194 - URR1B DNA MER1_type 0 225 5 2 997 308 293 33 41 chr12 54018484 54018605 -67238925 - L1ME1 LINE L1 -2479 5403 5284 2 997 1151 44 0 0 chr12 54018878 54019014 -67238516 + B1_Mus1 SINE Alu 1 136 -12 2 997 378 0 0 0 chr12 54019015 54019057 -67238473 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 2 997 297 0 0 0 chr12 54019346 54019379 -67238151 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 997 26 0 0 0 chr12 54021737 54021763 -67235767 + AT_rich Low_complexity Low_complexity 1 26 0 2 997 315 0 0 0 chr12 54022336 54022371 -67235159 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 997 216 0 0 0 chr12 54022371 54022394 -67235136 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 997 212 260 103 13 chr12 54023034 54023112 -67234418 - L2c LINE L2 -36 3351 3267 2 997 270 337 140 24 chr12 54023456 54023663 -67233867 - MIRb SINE MIR -8 260 30 3 997 224 355 47 0 chr12 54024291 54024398 -67233132 - MIR3 SINE MIR -13 195 84 3 997 636 279 70 20 chr12 54024622 54024823 -67232707 + B4A SINE B4 3 213 -79 3 997 202 246 16 16 chr12 54024916 54024978 -67232552 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 997 5667 61 3 1 chr12 54025338 54026045 -67231485 - L1_Mus3 LINE L1 -3 6635 5928 3 997 2389 141 0 3 chr12 54033875 54034246 -67223284 - Lx2 LINE L1 0 6997 6628 3 997 304 301 20 51 chr12 54034563 54034661 -67222869 - RSINE1 SINE B4 -68 97 3 3 997 237 65 0 0 chr12 54034667 54034698 -67222832 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 997 251 379 0 0 chr12 54034831 54035000 -67222530 + C-rich Low_complexity Low_complexity 1 169 0 3 997 906 250 10 5 chr12 54036051 54036248 -67221282 + B3 SINE B2 5 202 -14 3 997 233 29 0 29 chr12 54036302 54036337 -67221193 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 4 997 213 39 0 0 chr12 54037319 54037345 -67220185 + (GGA)n Simple_repeat Simple_repeat 3 28 0 4 997 233 220 0 57 chr12 54037368 54037421 -67220109 - L2c LINE L2 -228 3159 3110 4 997 462 36 0 0 chr12 54039638 54039694 -67217836 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 997 231 259 34 90 chr12 54039714 54039803 -67217727 - RNLTR23 LTR ERVK -100 542 459 4 997 304 231 25 13 chr12 54040934 54041013 -67216517 + ID4 SINE ID 1 80 -3 4 997 278 299 16 64 chr12 54041103 54041228 -67216302 - MIRc SINE MIR -147 121 3 4 997 903 56 0 0 chr12 54041442 54041568 -67215962 + (TG)n Simple_repeat Simple_repeat 1 126 0 4 997 189 0 0 0 chr12 54041720 54041741 -67215789 + (GTGTG)n Simple_repeat Simple_repeat 4 24 0 4 997 374 275 60 6 chr12 54042661 54042788 -67214742 + MIR SINE MIR 29 154 -114 4 997 340 289 71 43 chr12 54042788 54042929 -67214601 + RSINE1 SINE B4 2 146 -19 5 997 278 282 78 0 chr12 54043058 54043161 -67214369 + B1F2 SINE Alu 12 122 -27 5 997 624 182 0 0 chr12 54046085 54046217 -67211313 + (TAGTG)n Simple_repeat Simple_repeat 3 134 0 5 997 243 232 0 0 chr12 54047084 54047166 -67210364 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 997 446 297 0 0 chr12 54048402 54048503 -67209027 + PB1D10 SINE Alu 6 106 -11 5 997 844 251 62 59 chr12 54048578 54048866 -67208664 + Tigger7 DNA MER2_type 2201 2489 -2 5 997 777 110 0 0 chr12 54050528 54050646 -67206884 + (TCCC)n Simple_repeat Simple_repeat 4 121 0 5 997 528 304 65 113 chr12 54051779 54052195 -67205335 + MLT1L LTR MaLR 45 440 -170 5 997 8711 25 1 0 chr12 54052203 54053741 -67203789 - L1Md_T LINE L1 0 6582 5044 5 997 264 250 92 0 chr12 54055572 54055648 -67201882 + MTEb LTR MaLR 284 366 -13 5 997 393 138 92 0 chr12 54061973 54062038 -67195492 + ID4_ SINE ID 2 72 -11 6 997 895 252 24 0 chr12 54062226 54062436 -67195094 + B3 SINE B2 2 216 0 6 997 21 36 0 0 chr12 54062558 54062586 -67194944 + AT_rich Low_complexity Low_complexity 1 28 0 6 997 22 35 0 0 chr12 54062788 54062817 -67194713 + AT_rich Low_complexity Low_complexity 1 29 0 6 997 255 323 109 87 chr12 54064645 54064828 -67192702 + MLT1I LTR MaLR 157 343 -68 6 997 298 373 64 26 chr12 54065120 54065354 -67192176 + MIR SINE MIR 2 244 -18 6 997 201 74 0 0 chr12 54065756 54065783 -67191747 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 6 997 777 276 17 11 chr12 54065785 54065990 -67191540 - B3A SINE B2 -15 201 2 6 997 21 0 0 0 chr12 54067131 54067152 -67190378 + AT_rich Low_complexity Low_complexity 1 21 0 6 997 226 271 18 27 chr12 54071750 54071860 -67185670 + CT-rich Low_complexity Low_complexity 3 111 0 6 997 196 229 0 0 chr12 54075291 54075326 -67182204 - MIR SINE MIR -114 148 114 7 997 1342 79 17 0 chr12 54075444 54075621 -67181909 - B2_Mm2 SINE B2 -15 180 1 7 997 530 312 128 78 chr12 54078916 54079260 -67178270 - MLT1A1 LTR MaLR -1 407 4 7 997 441 0 0 0 chr12 54079426 54079475 -67178055 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 997 813 40 0 0 chr12 54080095 54080196 -67177334 + (TTTTC)n Simple_repeat Simple_repeat 3 103 0 7 997 485 194 256 56 chr12 54080218 54080398 -67177132 - B3 SINE B2 0 216 1 7 997 225 0 0 0 chr12 54080610 54080635 -67176895 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 997 1146 69 0 0 chr12 54080635 54080779 -67176751 - B1_Mus2 SINE Alu -2 145 2 7 997 567 260 138 21 chr12 54081804 54082044 -67175486 - Lx8 LINE L1 -4 7469 7202 7 997 229 214 24 0 chr12 54082736 54082778 -67174752 + ID4_ SINE ID 3 45 -38 7 997 441 0 0 0 chr12 54083446 54083495 -67174035 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 8 997 1820 52 17 0 chr12 54084442 54084674 -67172856 - L1Md_F3 LINE L1 -14 6570 6335 8 997 457 263 26 9 chr12 54084739 54084854 -67172676 + PB1D10 SINE Alu 1 117 0 8 997 21 0 0 0 chr12 54085010 54085031 -67172499 + AT_rich Low_complexity Low_complexity 1 21 0 8 997 212 163 0 0 chr12 54085073 54085116 -67172414 + A-rich Low_complexity Low_complexity 1 43 0 8 997 497 245 22 9 chr12 54086645 54086811 -67170719 - B4A SINE B4 -46 246 39 8 997 1357 161 126 28 chr12 54087169 54087454 -67170076 - RMER15 LTR ERVL -97 478 65 8 997 263 122 20 0 chr12 54087672 54087721 -67169809 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 8 997 241 188 11 66 chr12 54089533 54089624 -67167906 - L1MC5 LINE L1 -761 7200 7115 8 997 1481 198 99 37 chr12 54091081 54091433 -67166097 + ORR1D1 LTR MaLR 1 374 0 8 997 1466 62 10 10 chr12 54092101 54092296 -67165234 - B2_Mm2 SINE B2 0 195 1 9 997 26 0 0 0 chr12 54092545 54092571 -67164959 + AT_rich Low_complexity Low_complexity 1 26 0 9 997 196 337 114 18 chr12 54092761 54092927 -67164603 - L2b LINE L2 -235 3140 2959 9 997 1176 76 0 0 chr12 54093369 54093645 -67163885 + (CA)n Simple_repeat Simple_repeat 1 276 0 9 997 320 248 105 38 chr12 54094118 54094223 -67163307 - RSINE1 SINE B4 -53 112 1 9 997 21 36 0 0 chr12 54097018 54097046 -67160484 + AT_rich Low_complexity Low_complexity 1 28 0 9 997 348 312 92 0 chr12 54097333 54097442 -67160088 - RSINE1 SINE B4 -44 121 3 9 997 519 17 0 0 chr12 54097451 54097511 -67160019 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 997 237 363 0 29 chr12 54097634 54097739 -67159791 + L2c LINE L2 3282 3383 -4 9 997 826 230 355 51 chr12 54098966 54099281 -67158249 - MTD LTR MaLR -8 411 3 9 997 977 126 0 25 chr12 54099527 54099690 -67157840 + B2_Mm2 SINE B2 28 186 -9 1 997 186 133 0 0 chr12 54100622 54100652 -67156878 + (CAT)n Simple_repeat Simple_repeat 2 31 0 1 997 13485 56 3 115 chr12 54101331 54102656 -67154874 + L1Md_F2 LINE L1 3564 4876 -1007 1 997 4611 40 0 0 chr12 54102656 54103201 -67154329 - L1Md_T LINE L1 0 6582 6038 1 997 13485 56 3 115 chr12 54103201 54104151 -67153379 + L1Md_F2 LINE L1 4877 5585 -298 1 997 7867 56 0 16 chr12 54104152 54105162 -67152368 + L1Md_F2 LINE L1 5587 6580 -2 1 997 747 225 29 7 chr12 54105409 54105548 -67151982 + B1_Mur1 SINE Alu 4 145 -4 1 997 1041 213 166 151 chr12 54105813 54105950 -67151580 - MT2A LTR ERVL -68 465 284 1 997 4533 122 29 11 chr12 54105950 54106669 -67150861 + Lx LINE L1 5917 6648 -6 1 997 1041 213 166 151 chr12 54106669 54106989 -67150541 - MT2A LTR ERVL -250 283 1 1 997 494 152 19 0 chr12 54109149 54109254 -67148276 + (TATG)n Simple_repeat Simple_repeat 1 107 0 1 997 261 299 35 50 chr12 54109296 54109437 -67148093 - B3A SINE B2 -47 151 13 1 997 401 71 0 0 chr12 54109511 54109567 -67147963 + B2_Mm2 SINE B2 1 56 -139 1 997 422 218 13 0 chr12 54109605 54109683 -67147847 - ID4 SINE ID -4 79 1 1 997 226 225 0 27 chr12 54109699 54109772 -67147758 - Lx9 LINE L1 -2 7642 7572 1 997 1168 214 41 0 chr12 54109775 54110069 -67147461 + Lx9 LINE L1 7202 7507 -137 1 997 992 106 7 34 chr12 54112101 54112248 -67145282 + B1_Mus1 SINE Alu 1 143 -5 1 997 406 356 51 0 chr12 54112265 54112383 -67145147 - ID_B1 SINE B4 -17 207 84 1 997 841 172 27 7 chr12 54112869 54113015 -67144515 - B1_Mur2 SINE Alu 0 149 1 1 997 1010 86 0 0 chr12 54114787 54114915 -67142615 + B1_Mus1 SINE Alu 12 139 -9 1 997 262 0 26 26 chr12 54114915 54114954 -67142576 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 997 300 265 159 99 chr12 54114954 54114976 -67142554 + FAM SINE Alu 294 305 -6 1 997 297 285 23 32 chr12 54115298 54115415 -67142115 + AluG_3 SINE Alu 1 218 -93 1 997 268 333 106 62 chr12 54116244 54116423 -67141107 + MER5A DNA MER1_type 1 187 -2 1 997 239 29 57 0 chr12 54116749 54116784 -67140746 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 997 693 286 12 53 chr12 54116873 54117120 -67140410 + B4A SINE B4 1 237 -55 1 997 211 368 16 64 chr12 54117283 54117408 -67140122 + MIRb SINE MIR 42 160 -108 1 997 38 89 0 0 chr12 54118065 54118166 -67139364 + AT_rich Low_complexity Low_complexity 1 101 0 1 997 373 286 0 0 chr12 54118901 54118978 -67138552 + PB1 SINE Alu 1 77 -50 1 997 672 313 67 70 chr12 54119701 54120014 -67137516 + ORR1E LTR MaLR 3 314 -45 1 997 285 292 15 0 chr12 54120057 54120122 -67137408 - ID4 SINE ID -1 82 17 1 997 266 0 0 29 chr12 54120534 54120569 -67136961 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 997 391 194 19 0 chr12 54120911 54121014 -67136516 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 997 429 54 0 0 chr12 54121016 54121072 -67136458 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 997 206 182 23 0 chr12 54121637 54121681 -67135849 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 997 940 105 7 7 chr12 54122084 54122237 -67135293 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 1 997 1576 183 7 11 chr12 54122422 54122698 -67134832 - ORR1C2 LTR MaLR 0 384 110 1 997 277 220 0 9 chr12 54123887 54123962 -67133568 + L1_Mur3 LINE L1 5377 5448 -438 1 997 640 219 99 17 chr12 54123962 54124134 -67133396 + MTD LTR MaLR 234 419 0 1 997 403 328 83 117 chr12 54124134 54124434 -67133096 - LTR81A LTR ERV1? -106 1244 955 1 997 236 319 145 8 chr12 54125229 54125346 -67132184 + MER5A1 DNA MER1_type 34 166 0 1 997 465 336 7 13 chr12 54129239 54129393 -67128137 - RSINE1 SINE B4 -8 157 5 1 997 860 201 0 7 chr12 54129422 54129567 -67127963 + B1_Mur4 SINE Alu 1 144 -6 1 997 450 0 0 0 chr12 54129616 54129666 -67127864 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 997 49 18 0 0 chr12 54131446 54131502 -67126028 + AT_rich Low_complexity Low_complexity 1 56 0 1 997 762 186 8 4 chr12 54131686 54131951 -67125579 + (TA)n Simple_repeat Simple_repeat 1 266 0 1 997 339 25 0 0 chr12 54131972 54132012 -67125518 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 997 325 265 50 30 chr12 54132186 54132287 -67125243 - L4 LINE RTE -210 1819 1717 1 997 360 0 0 0 chr12 54132295 54132335 -67125195 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 998 366 23 0 0 chr12 54133222 54133265 -67124265 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 998 212 354 0 0 chr12 54134312 54134391 -67123139 + GA-rich Low_complexity Low_complexity 4 82 0 1 998 222 37 0 0 chr12 54135445 54135472 -67122058 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 998 378 0 0 0 chr12 54135662 54135704 -67121826 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1 998 1090 60 0 0 chr12 54135705 54135839 -67121691 - B1_Mus2 SINE Alu -12 135 2 1 998 624 193 218 37 chr12 54136626 54136814 -67120716 + ID_B1 SINE B4 1 222 -2 1 998 284 0 28 0 chr12 54137509 54137545 -67119985 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 998 407 215 129 65 chr12 54138241 54138380 -67119150 + RSINE1 SINE B4 1 148 -17 1 998 23 0 0 0 chr12 54138661 54138684 -67118846 + AT_rich Low_complexity Low_complexity 1 23 0 1 998 203 184 26 0 chr12 54138773 54138811 -67118719 + GA-rich Low_complexity Low_complexity 4 42 0 1 998 408 243 0 0 chr12 54139051 54139162 -67118368 + (TA)n Simple_repeat Simple_repeat 2 112 0 1 998 342 0 0 0 chr12 54139182 54139220 -67118310 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1 998 387 300 99 8 chr12 54139537 54139668 -67117862 + RSINE1 SINE B4 4 146 -19 1 998 506 119 12 0 chr12 54140783 54140867 -67116663 + (TCC)n Simple_repeat Simple_repeat 3 87 0 1 998 427 274 162 34 chr12 54141464 54141668 -67115862 - L3b LINE CR1 -10 472 243 1 998 1655 87 0 0 chr12 54142044 54142274 -67115256 + L1Md_F2 LINE L1 6353 6582 0 1 998 1057 190 231 0 chr12 54142450 54142692 -67114838 + ORR1B2 LTR MaLR 1 298 -69 1 998 1003 74 13 26 chr12 54142692 54142844 -67114686 + L1_Mus1 LINE L1 6418 6567 0 1 998 266 286 48 0 chr12 54143535 54143619 -67113911 + Cheshire DNA MER1_type 173 260 -2160 1 998 22 0 0 0 chr12 54144136 54144158 -67113372 + AT_rich Low_complexity Low_complexity 1 22 0 1 998 459 35 0 0 chr12 54144165 54144222 -67113308 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 998 396 0 0 0 chr12 54144222 54144265 -67113265 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 998 417 137 19 19 chr12 54144620 54144724 -67112806 + (TATG)n Simple_repeat Simple_repeat 3 106 0 1 998 297 179 46 35 chr12 54144817 54144904 -67112626 + MIR3 SINE MIR 106 193 -15 1 998 1088 232 182 14 chr12 54145234 54145592 -67111938 - MTD LTR MaLR 0 419 2 1 998 263 281 43 9 chr12 54145862 54145977 -67111553 + L1MB7 LINE L1 6054 6172 -12 1 998 344 350 109 88 chr12 54146333 54146571 -67110959 + B4 SINE B4 50 292 0 1 998 478 227 169 15 chr12 54146720 54146850 -67110680 + RSINE1 SINE B4 10 159 -6 1 998 966 92 0 0 chr12 54147693 54147813 -67109717 - 5S rRNA rRNA -1 120 1 1 998 647 139 15 0 chr12 54148597 54148734 -67108796 + (TCTCTG)n Simple_repeat Simple_repeat 2 140 0 1 998 34056 67 3 3 chr12 54149316 54155293 -67102237 - L1Md_F2 LINE L1 -1 6584 236 1 998 923 307 15 117 chr12 54156127 54156452 -67101078 + B4 SINE B4 1 292 0 1 998 444 37 0 0 chr12 54156559 54156613 -67100917 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 998 675 261 0 0 chr12 54156618 54156752 -67100778 - B3A SINE B2 -38 160 27 1 998 423 0 0 0 chr12 54156765 54156812 -67100718 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 998 344 59 20 0 chr12 54156812 54156862 -67100668 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 998 497 165 192 10 chr12 54156881 54156985 -67100545 - B1_Mur4 SINE Alu -27 123 1 1 998 231 351 48 108 chr12 54156961 54157004 -67100526 + B4A SINE B4 58 213 -79 1 998 498 271 65 8 chr12 54157004 54157127 -67100403 + B1_Mur1 SINE Alu 6 135 -14 1 998 336 24 0 0 chr12 54157132 54157173 -67100357 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 998 1673 296 99 0 chr12 54157238 54157955 -67099575 - Lx8 LINE L1 -96 7377 6590 1 998 422 271 37 0 chr12 54158227 54158334 -67099196 - PB1D7 SINE Alu -9 111 1 1 998 530 15 15 0 chr12 54159981 54160048 -67097482 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 998 210 37 0 0 chr12 54160693 54160720 -67096810 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 998 306 315 29 58 chr12 54161190 54161328 -67096202 + MER102a DNA MER1_type 88 221 -109 1 998 432 296 28 0 chr12 54161595 54161703 -67095827 + MER63B DNA AcHobo 300 410 -26 1 998 381 43 0 0 chr12 54166700 54166747 -67090783 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 998 27 0 0 0 chr12 54169809 54169836 -67087694 + AT_rich Low_complexity Low_complexity 1 27 0 1 998 324 0 0 0 chr12 54170757 54170793 -67086737 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 998 369 0 0 0 chr12 54170937 54170978 -67086552 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 998 234 231 12 71 chr12 54170994 54171078 -67086452 - MER34A1 LTR ERV1 -453 134 56 1 998 23 0 0 0 chr12 54171187 54171210 -67086320 + AT_rich Low_complexity Low_complexity 1 23 0 1 998 21 36 0 0 chr12 54172678 54172706 -67084824 + AT_rich Low_complexity Low_complexity 1 28 0 1 998 477 0 0 0 chr12 54172828 54172881 -67084649 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 998 441 275 90 45 chr12 54174157 54174313 -67083217 - RSINE1 SINE B4 0 165 3 1 998 205 258 14 41 chr12 54175150 54175237 -67082293 + GA-rich Low_complexity Low_complexity 1 84 0 2 998 504 0 0 0 chr12 54175482 54175538 -67081992 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 998 387 325 25 25 chr12 54175903 54176064 -67081466 - MIRb SINE MIR -69 199 39 2 998 180 0 0 0 chr12 54176268 54176288 -67081242 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 998 262 299 65 0 chr12 54176392 54176469 -67081061 - ID4 SINE ID 0 83 2 2 998 1815 147 13 86 chr12 54177193 54177568 -67079962 + ORR1B1 LTR MaLR 1 394 0 2 998 440 353 27 81 chr12 54178598 54178857 -67078673 + B4A SINE B4 48 292 0 2 998 393 141 0 0 chr12 54178860 54178945 -67078585 + (GA)n Simple_repeat Simple_repeat 2 86 0 2 998 281 303 57 57 chr12 54178972 54179112 -67078418 - MIR SINE MIR -4 258 119 2 998 341 348 0 42 chr12 54179619 54179739 -67077791 + PB1D10 SINE Alu 3 117 0 2 998 630 249 97 38 chr12 54179879 54180107 -67077423 + RMER15 LTR ERVL 32 293 -282 2 998 452 240 133 49 chr12 54180129 54180493 -67077037 + L1MA5A LINE L1 5548 5936 -355 2 998 202 226 19 0 chr12 54180822 54180844 -67076686 + polypurine Low_complexity Low_complexity 2 23 0 2 998 1241 82 55 6 chr12 54180844 54181027 -67076503 + B2_Mm2 SINE B2 2 193 -2 2 998 202 226 19 0 chr12 54181027 54181057 -67076473 + polypurine Low_complexity Low_complexity 24 54 0 2 998 524 289 23 0 chr12 54181519 54181647 -67075883 - ID_B1 SINE B4 -6 218 88 2 998 276 301 0 10 chr12 54181705 54181809 -67075721 + Lx8 LINE L1 5815 5917 -1556 2 998 189 74 0 0 chr12 54181975 54182002 -67075528 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 998 2711 184 103 29 chr12 54182106 54182698 -67074832 - Lx9 LINE L1 -1 7643 6999 2 998 1248 106 5 21 chr12 54182698 54182890 -67074640 - B2_Mm1t SINE B2 -2 191 3 2 998 2711 184 103 29 chr12 54182890 54182979 -67074551 - Lx9 LINE L1 -646 6998 6912 2 998 246 281 0 0 chr12 54183879 54183936 -67073594 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 998 485 340 21 0 chr12 54184493 54184634 -67072896 + RSINE1 SINE B4 2 145 -20 2 998 390 74 0 0 chr12 54184637 54184691 -67072839 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 998 982 221 57 33 chr12 54184719 54184930 -67072600 - B3 SINE B2 0 216 1 2 998 558 0 0 0 chr12 54185136 54185198 -67072332 + (CATAT)n Simple_repeat Simple_repeat 2 63 0 2 998 244 200 28 14 chr12 54185213 54185269 -67072261 + (TCTG)n Simple_repeat Simple_repeat 1 58 0 2 998 1197 61 0 0 chr12 54185269 54185416 -67072114 - B1_Mus2 SINE Alu 0 147 1 2 998 244 200 28 14 chr12 54185416 54185430 -67072100 + (TCTG)n Simple_repeat Simple_repeat 3 16 0 2 998 475 332 167 5 chr12 54185433 54185654 -67071876 - Lx8 LINE L1 -145 7328 7072 2 998 387 207 171 16 chr12 54185675 54185798 -67071732 - B4A SINE B4 -44 248 107 2 998 580 272 128 29 chr12 54185853 54186595 -67070935 - L1MDa LINE L1 -3262 3841 3005 2 998 227 360 0 73 chr12 54187679 54187802 -67069728 - L1MDa LINE L1 -5655 1375 1262 2 998 492 18 0 0 chr12 54188164 54188221 -67069309 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 998 1645 147 116 121 chr12 54188713 54188931 -67068599 - ORR1C1 LTR MaLR 0 378 165 2 998 396 0 0 0 chr12 54188931 54188975 -67068555 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 2 998 1645 147 116 121 chr12 54188975 54189136 -67068394 - ORR1C1 LTR MaLR -214 164 1 2 998 609 14 0 0 chr12 54189363 54189433 -67068097 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 2 998 189 265 88 0 chr12 54190324 54190392 -67067138 - MIRb SINE MIR -31 237 164 2 998 350 123 18 0 chr12 54191029 54191086 -67066444 - MTD LTR MaLR -4 415 358 2 998 1831 193 30 27 chr12 54191086 54191458 -67066072 + ORR1D1 LTR MaLR 1 373 -1 2 998 6106 201 57 16 chr12 54191467 54192779 -67064751 + ORR1D1-int LTR MaLR 5 1370 0 2 998 2010 177 45 0 chr12 54192779 54193135 -67064395 + ORR1D1 LTR MaLR 3 374 0 2 998 2086 216 7 17 chr12 54193135 54193499 -67064031 - MTD LTR MaLR -59 360 1 2 998 21 0 0 0 chr12 54195942 54195963 -67061567 + AT_rich Low_complexity Low_complexity 1 21 0 2 998 309 310 32 78 chr12 54197286 54197440 -67060090 + L2a LINE L2 3278 3424 -2 2 998 436 294 10 0 chr12 54197736 54197838 -67059692 + RSINE1 SINE B4 23 125 -40 2 998 381 86 0 0 chr12 54197838 54197896 -67059634 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 998 542 15 15 0 chr12 54197896 54197962 -67059568 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 998 419 87 0 14 chr12 54198671 54198741 -67058789 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 998 249 33 0 0 chr12 54198748 54198778 -67058752 + (AGGGGG)n Simple_repeat Simple_repeat 3 32 0 2 998 344 330 24 48 chr12 54198779 54198903 -67058627 - RSINE1 SINE B4 -40 125 5 2 998 307 323 54 0 chr12 54199147 54199240 -67058290 + L2a LINE L2 3302 3399 -27 2 998 423 304 32 8 chr12 54200036 54200162 -67057368 - B1F SINE Alu -1 148 20 2 998 243 206 74 99 chr12 54200146 54200227 -67057303 - MER5A DNA MER1_type -98 91 13 2 998 338 229 16 0 chr12 54201079 54201150 -67056380 + ID4 SINE ID 20 91 -61 2 998 192 77 0 0 chr12 54201154 54201180 -67056350 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2 998 199 95 23 45 chr12 54201446 54201466 -67056064 + (TTA)n Simple_repeat Simple_repeat 1 19 0 2 998 396 0 0 0 chr12 54201466 54201510 -67056020 + (TAG)n Simple_repeat Simple_repeat 1 44 0 2 998 199 95 23 45 chr12 54201510 54201533 -67055997 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2 998 384 194 0 0 chr12 54202111 54202235 -67055295 + CT-rich Low_complexity Low_complexity 1 124 0 2 998 227 311 0 32 chr12 54202263 54202326 -67055204 + L2c LINE L2 3258 3318 -69 2 998 23 54 0 0 chr12 54202889 54202926 -67054604 + AT_rich Low_complexity Low_complexity 1 37 0 2 998 462 322 40 20 chr12 54202984 54203136 -67054394 - B4A SINE B4 -8 284 130 2 998 360 0 0 0 chr12 54203142 54203182 -67054348 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 998 226 94 0 72 chr12 54203568 54203637 -67053893 + (TTTA)n Simple_repeat Simple_repeat 3 66 0 2 998 234 0 0 0 chr12 54206891 54206917 -67050613 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 998 326 23 23 0 chr12 54207541 54207584 -67049946 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 998 452 278 142 80 chr12 54207633 54207907 -67049623 - B4A SINE B4 0 292 2 2 998 324 263 0 0 chr12 54208843 54208919 -67048611 + MTE2b LTR MaLR 1 76 -303 2 998 852 157 7 0 chr12 54208914 54209054 -67048476 - B1_Mus1 SINE Alu 0 148 8 2 998 865 254 131 7 chr12 54209056 54209263 -67048267 + MTE2b LTR MaLR 57 271 -108 2 998 660 300 111 33 chr12 54209342 54210120 -67047410 + L1MEc LINE L1 1570 2406 -3994 2 998 249 277 12 0 chr12 54210135 54210256 -67047274 + L1MEc LINE L1 2500 2635 -3704 2 998 758 309 113 41 chr12 54210455 54210768 -67046762 + L1MA9 LINE L1 5501 5856 -435 2 998 3107 124 2 35 chr12 54210768 54211259 -67046271 - MT2C_Mm LTR ERVL 0 475 1 2 998 758 277 77 45 chr12 54211259 54211628 -67045902 + L1MA9 LINE L1 5857 6243 -69 2 998 246 22 20 61 chr12 54212428 54212477 -67045053 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 998 1238 41 0 7 chr12 54212484 54212632 -67044898 - B1_Mus2 SINE Alu 0 147 1 2 998 339 164 0 0 chr12 54212789 54212850 -67044680 + GA-rich Low_complexity Low_complexity 3 63 0 2 998 428 268 47 8 chr12 54212860 54212988 -67044542 + B1F SINE Alu 4 136 -13 2 998 204 219 24 0 chr12 54213663 54213704 -67043826 + CT-rich Low_complexity Low_complexity 2 43 0 2 998 281 322 11 0 chr12 54214390 54214477 -67043053 + GA-rich Low_complexity Low_complexity 1 88 0 2 998 25 31 0 0 chr12 54214477 54214509 -67043021 + AT_rich Low_complexity Low_complexity 1 32 0 2 998 217 337 122 28 chr12 54214591 54214771 -67042759 + MIR SINE MIR 66 262 0 2 998 226 394 0 0 chr12 54215347 54215484 -67042046 + (CCA)n Simple_repeat Simple_repeat 1 137 0 2 998 21 57 0 0 chr12 54216281 54216316 -67041214 + AT_rich Low_complexity Low_complexity 1 35 0 2 998 361 224 113 52 chr12 54216403 54216648 -67040882 - L1MA4A LINE L1 -277 6023 5766 2 998 4638 67 12 12 chr12 54216757 54217361 -67040169 - L1_Mus1 LINE L1 0 6567 5964 2 998 3407 67 8 0 chr12 54217361 54217935 -67039595 + L1_Mus1 LINE L1 5374 5958 -609 2 998 1260 98 38 0 chr12 54217972 54218155 -67039375 - B2_Mm2 SINE B2 -5 190 1 2 998 554 283 105 60 chr12 54218164 54218661 -67038869 - L1MCb LINE L1 -4850 1195 677 2 998 1137 82 0 0 chr12 54219247 54219393 -67038137 + B1_Mus2 SINE Alu 2 147 0 2 998 607 294 118 0 chr12 54219515 54219743 -67037787 + ORR1D2 LTR MaLR 64 318 -52 2 998 318 26 0 0 chr12 54219743 54219782 -67037748 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2 998 21 57 0 0 chr12 54219937 54219972 -67037558 + AT_rich Low_complexity Low_complexity 1 35 0 2 998 25 90 0 0 chr12 54220006 54220073 -67037457 + AT_rich Low_complexity Low_complexity 1 67 0 2 998 302 306 67 20 chr12 54220328 54220478 -67037052 + L2 LINE L2 2430 2586 -833 2 998 198 0 0 0 chr12 54222310 54222332 -67035198 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 998 3720 91 37 2 chr12 54222482 54223019 -67034511 - L1_Mm LINE L1 -1407 4476 3921 2 998 1353 85 9 70 chr12 54223019 54223233 -67034297 + L1_Mus3 LINE L1 6438 6638 0 2 998 351 150 0 0 chr12 54223397 54223457 -67034073 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 998 251 195 0 0 chr12 54223761 54223802 -67033728 - ORR1E LTR MaLR -50 309 269 2 998 1709 290 81 30 chr12 54227913 54228607 -67028923 - MER44C DNA MER2_type -2 731 3 2 998 198 0 0 0 chr12 54228967 54228989 -67028541 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 998 25 31 0 0 chr12 54229070 54229102 -67028428 + AT_rich Low_complexity Low_complexity 1 32 0 2 998 295 247 110 0 chr12 54229389 54229462 -67028068 + PB1 SINE Alu 33 113 -14 2 998 617 308 120 31 chr12 54229734 54230150 -67027380 - MER21B LTR ERV1 -124 739 287 2 998 450 0 0 0 chr12 54230529 54230579 -67026951 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 998 425 272 44 142 chr12 54231010 54231284 -67026246 - L1MB5 LINE L1 -1 6173 5927 2 998 259 234 152 30 chr12 54231574 54231640 -67025890 + ID4 SINE ID 2 75 -8 3 998 271 296 0 0 chr12 54231649 54231720 -67025810 + MER2B DNA MER2_type 266 336 0 3 998 603 183 22 37 chr12 54232089 54232225 -67025305 - ORR1E LTR MaLR 0 370 237 3 998 711 67 0 118 chr12 54232284 54232488 -67025042 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 998 333 127 55 0 chr12 54232488 54232543 -67024987 + HAL1-3A_ME LINE L1 1971 2028 -830 3 998 589 154 0 30 chr12 54232543 54232710 -67024820 + (CA)n Simple_repeat Simple_repeat 2 163 0 3 998 307 78 18 73 chr12 54232710 54232765 -67024765 + HAL1-3A_ME LINE L1 1976 2027 -831 3 998 820 72 0 86 chr12 54232768 54233029 -67024501 + (CA)n Simple_repeat Simple_repeat 1 238 0 3 998 749 263 36 16 chr12 54233062 54233255 -67024275 - ORR1E LTR MaLR -162 197 1 3 998 461 302 69 98 chr12 54234401 54234738 -67022792 + ORR1E LTR MaLR 23 379 0 3 998 238 278 119 60 chr12 54234816 54234832 -67022698 - CYRA11_Mm Unknown Y-chromosome -218 399 376 3 998 637 163 187 0 chr12 54234832 54234955 -67022575 + URR1A DNA MER1_type 1 146 -80 3 998 367 222 22 43 chr12 54235074 54235222 -67022308 - URR1A DNA MER1_type 0 226 83 3 998 198 0 0 0 chr12 54235858 54235880 -67021650 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 998 827 182 0 6 chr12 54236560 54236731 -67020799 + GA-rich Low_complexity Low_complexity 4 173 0 3 998 288 281 67 0 chr12 54236732 54236821 -67020709 + polypurine Low_complexity Low_complexity 1 95 0 3 998 312 281 12 35 chr12 54236821 54236906 -67020624 + HAL1-3A_ME LINE L1 2284 2366 -492 3 998 1545 50 5 25 chr12 54236923 54237126 -67020404 + L1Md_F2 LINE L1 6384 6582 0 3 998 25 31 0 0 chr12 54237158 54237190 -67020340 + AT_rich Low_complexity Low_complexity 1 32 0 3 998 261 319 47 7 chr12 54238359 54238498 -67019032 - MIRc SINE MIR -32 176 29 3 998 234 176 0 89 chr12 54238723 54238779 -67018751 - L2c LINE L2 -191 3196 3146 3 998 665 301 71 54 chr12 54239194 54239256 -67018274 - ORR1E LTR MaLR -2 357 301 3 998 3897 56 0 2 chr12 54239256 54239702 -67017828 + L1_Mus1 LINE L1 6116 6560 -7 3 998 336 48 0 0 chr12 54239702 54239744 -67017786 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 998 665 301 71 54 chr12 54239744 54240031 -67017499 - ORR1E LTR MaLR -59 300 2 3 998 246 32 0 0 chr12 54240320 54240351 -67017179 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 998 279 0 0 0 chr12 54243775 54243806 -67013724 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 998 469 250 0 11 chr12 54245900 54246074 -67011456 + (TG)n Simple_repeat Simple_repeat 2 173 0 3 998 315 0 0 0 chr12 54246992 54247027 -67010503 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 998 315 0 0 0 chr12 54247439 54247474 -67010056 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 998 243 0 0 0 chr12 54247520 54247547 -67009983 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 998 339 25 0 0 chr12 54247547 54247586 -67009944 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 998 21 36 0 0 chr12 54249317 54249345 -67008185 + AT_rich Low_complexity Low_complexity 1 28 0 3 998 201 296 19 0 chr12 54250231 54250285 -67007245 + MIRm SINE MIR 216 270 -6 3 998 225 325 12 12 chr12 54250449 54250530 -67007000 - L2a LINE L2 -2 3424 3344 3 998 303 354 111 49 chr12 54251537 54251825 -67005705 - L3 LINE CR1 -127 4362 4057 3 998 186 133 0 0 chr12 54251965 54251995 -67005535 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 998 198 0 0 0 chr12 54252415 54252437 -67005093 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 998 465 76 0 0 chr12 54252877 54252943 -67004587 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 998 195 42 0 0 chr12 54253164 54253188 -67004342 + (T)n Simple_repeat Simple_repeat 1 24 0 3 998 396 0 0 0 chr12 54253215 54253259 -67004271 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 998 264 271 29 75 chr12 54253296 54253504 -67004026 - L1MD3 LINE L1 -278 7717 7438 3 998 718 278 91 4 chr12 54253572 54253803 -67003727 + MER58B DNA MER1_type 1 251 -90 3 998 1237 55 7 7 chr12 54254027 54254175 -67003355 - B1_Mus1 SINE Alu 0 148 1 3 998 468 0 0 0 chr12 54254558 54254610 -67002920 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 998 685 306 103 29 chr12 54255134 54255474 -67002056 - MLT1A0 LTR MaLR 0 365 1 3 998 180 97 0 0 chr12 54255814 54255845 -67001685 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 998 208 262 127 32 chr12 54257099 54257162 -67000368 - MIRb SINE MIR -32 236 168 3 998 297 332 75 30 chr12 54258260 54258555 -66998975 - L1MC4a LINE L1 -156 7886 7579 3 998 300 111 0 0 chr12 54258743 54258788 -66998742 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 3 998 320 316 156 41 chr12 54258788 54259108 -66998422 - L1MC4a LINE L1 -758 7284 6928 3 998 6030 144 24 19 chr12 54259330 54260304 -66997226 - Lx2B LINE L1 -1 6999 6022 3 998 3014 108 6 12 chr12 54260304 54260800 -66996730 + Lx2 LINE L1 5517 6016 -981 3 998 396 59 0 0 chr12 54260923 54260974 -66996556 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 998 441 307 102 98 chr12 54261323 54261753 -66995777 - L1MC4a LINE L1 -1573 6309 5878 3 998 366 263 69 29 chr12 54263363 54263465 -66994065 - PB1D9 SINE Alu -10 110 5 3 124 4128 200 48 95 chr12 54263708 54265112 -66992418 + RMER1A Other Other 7 1025 -5 3 999 568 229 0 9 chr12 54265124 54265230 -66992300 + B3A SINE B2 22 126 -72 3 999 243 88 0 0 chr12 54265230 54265264 -66992266 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 999 644 107 8 0 chr12 54265264 54265385 -66992145 + (GA)n Simple_repeat Simple_repeat 1 122 0 3 999 1054 255 0 5 chr12 54266000 54266213 -66991317 - B3 SINE B2 -3 213 2 3 999 203 347 160 26 chr12 54266584 54266853 -66990677 - L4 LINE RTE -1222 807 503 3 999 295 274 41 0 chr12 54268342 54268415 -66989115 - ID4_ SINE ID -6 77 2 3 999 456 318 47 16 chr12 54268454 54268582 -66988948 - RSINE1 SINE B4 -29 136 5 3 999 317 327 59 0 chr12 54268881 54268982 -66988548 - PB1D7 SINE Alu -1 119 13 3 999 188 0 74 0 chr12 54268991 54269018 -66988512 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 999 228 281 60 110 chr12 54269108 54269308 -66988222 - YREP_Mm Unknown Unknown -1437 375 186 3 999 429 244 109 0 chr12 54269198 54269317 -66988213 + B1F SINE Alu 18 149 0 3 999 5669 58 0 5 chr12 54270501 54271172 -66986358 - L1Md_F2 LINE L1 0 6582 5915 3 999 11200 48 0 1 chr12 54271172 54272603 -66984927 + L1Md_F2 LINE L1 4515 5944 -638 3 999 312 22 67 0 chr12 54272711 54272756 -66984774 + MTC LTR MaLR 2 49 -372 3 999 1736 194 38 44 chr12 54272813 54273180 -66984350 - ORR1D1 LTR MaLR -8 366 2 3 999 464 125 37 12 chr12 54273181 54273262 -66984268 - ORR1D2 LTR MaLR -287 83 1 3 999 1876 282 35 8 chr12 54273262 54273773 -66983757 - Lx8 LINE L1 -711 6762 6238 3 999 216 369 48 24 chr12 54273817 54273942 -66983588 + MIRm SINE MIR 23 150 -126 3 999 198 0 0 0 chr12 54275632 54275654 -66981876 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 999 1434 89 0 5 chr12 54277823 54278016 -66979514 - B2_Mm2 SINE B2 -3 192 1 3 999 290 288 0 0 chr12 54278747 54278813 -66978717 + tRNA-Ala-GCA tRNA tRNA 3 68 -7 3 999 1340 5 16 18 chr12 54278814 54279205 -66978325 + (TG)n Simple_repeat Simple_repeat 1 389 0 3 999 658 233 98 0 chr12 54279779 54279942 -66977588 + B3A SINE B2 2 180 -18 3 999 245 347 0 0 chr12 54281872 54281967 -66975563 - L1M5 LINE L1 -511 5668 5574 3 999 347 183 65 7 chr12 54282044 54282129 -66975401 - PB1D7 SINE Alu -55 93 9 3 999 615 281 51 56 chr12 54282320 54282554 -66974976 - B4 SINE B4 0 292 60 3 999 339 130 0 0 chr12 54282555 54282609 -66974921 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 999 240 298 83 0 chr12 54282641 54282725 -66974805 - B1F1 SINE Alu -48 101 11 3 999 359 276 87 49 chr12 54283034 54283217 -66974313 - L1MA9 LINE L1 -3 6309 6120 3 999 8270 24 10 0 chr12 54283227 54284772 -66972758 - L1Md_T LINE L1 -1 6581 5014 3 999 3798 23 0 0 chr12 54284769 54285200 -66972330 + L1Md_T LINE L1 4576 5006 -877 3 999 559 272 31 40 chr12 54285198 54285420 -66972110 - L1MA9 LINE L1 -204 6108 5889 3 999 486 0 0 0 chr12 54285422 54285476 -66972054 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 999 528 271 98 0 chr12 54285508 54285744 -66971786 - L1M1 LINE L1 -699 5604 5346 3 999 510 96 0 0 chr12 54285744 54285817 -66971713 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 3 999 330 87 0 0 chr12 54285855 54285901 -66971629 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 3 999 884 168 0 6 chr12 54286150 54286324 -66971206 + CT-rich Low_complexity Low_complexity 3 175 0 3 999 270 322 119 47 chr12 54286421 54286543 -66970987 + MLT1A LTR MaLR 58 176 -189 3 999 541 0 29 0 chr12 54286543 54286612 -66970918 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 999 280 313 73 14 chr12 54286612 54286766 -66970764 + MLT1A LTR MaLR 177 363 -11 3 999 200 79 53 0 chr12 54287189 54287227 -66970303 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 999 642 341 114 21 chr12 54287790 54288212 -66969318 + MLT1G LTR MaLR 93 553 -38 3 999 1376 241 78 5 chr12 54288642 54289027 -66968503 + MTD LTR MaLR 8 405 -14 3 999 292 269 13 0 chr12 54289156 54289234 -66968296 - RMER15 LTR ERVL -126 449 371 3 999 414 250 70 0 chr12 54289484 54289584 -66967946 + ID_B1 SINE B4 83 189 -35 3 999 208 331 130 25 chr12 54289672 54289833 -66967697 + MER5B DNA MER1_type 1 178 0 3 999 1060 205 80 0 chr12 54290030 54290279 -66967251 - Lx9 LINE L1 -2 7642 7374 3 999 470 17 17 0 chr12 54290762 54290821 -66966709 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 3 999 213 65 0 0 chr12 54291825 54291856 -66965674 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 999 180 0 0 0 chr12 54293246 54293266 -66964264 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 999 31 44 0 0 chr12 54293858 54293903 -66963627 + AT_rich Low_complexity Low_complexity 1 45 0 3 999 32879 70 44 10 chr12 54295546 54301275 -66956255 - L1Md_F2 LINE L1 -2 6580 651 4 999 477 84 0 0 chr12 54301455 54301526 -66956004 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 4 999 617 156 12 12 chr12 54301543 54301712 -66955818 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 4 999 291 114 0 0 chr12 54301719 54301763 -66955767 + (CCTG)n Simple_repeat Simple_repeat 3 46 0 4 999 1971 25 46 0 chr12 54302211 54302449 -66955081 + L1Md_F3 LINE L1 6335 6583 -1 4 999 183 80 0 0 chr12 54303312 54303337 -66954193 + (TTCTG)n Simple_repeat Simple_repeat 1 25 0 4 999 458 216 33 1 chr12 54303339 54303454 -66954076 - B1_Mur2 SINE Alu -22 127 3 4 999 705 164 113 52 chr12 54303485 54303697 -66953833 - Lx9 LINE L1 -7 7637 7413 4 999 383 257 19 56 chr12 54303847 54303954 -66953576 + B3A SINE B2 1 103 -95 4 999 37 0 0 0 chr12 54303983 54304020 -66953510 + AT_rich Low_complexity Low_complexity 1 37 0 4 999 1070 124 53 15 chr12 54304279 54304489 -66953041 - ORR1A4 LTR MaLR -1 377 109 4 999 25 0 0 0 chr12 54305380 54305405 -66952125 + AT_rich Low_complexity Low_complexity 1 25 0 4 999 1149 93 157 15 chr12 54305954 54306151 -66951379 - URR1B DNA MER1_type 0 225 1 4 999 1803 197 36 46 chr12 54306163 54306485 -66951045 - MTD LTR MaLR -8 411 84 4 999 207 0 0 0 chr12 54306485 54306508 -66951022 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 999 1803 197 36 46 chr12 54306508 54306600 -66950930 - MTD LTR MaLR -336 83 1 4 999 1669 30 0 10 chr12 54307012 54307216 -66950314 + L1Md_F3 LINE L1 6368 6569 -15 4 999 406 219 36 0 chr12 54307277 54307370 -66950160 + B1F SINE Alu 6 111 -16 4 999 180 125 0 0 chr12 54308527 54308559 -66948971 + (TTGG)n Simple_repeat Simple_repeat 3 34 0 4 999 35564 62 3 1 chr12 54308613 54313907 -66943623 - L1Md_F2 LINE L1 0 6582 1278 4 999 5085 83 45 10 chr12 54313903 54314620 -66942910 - L1Md_F2 LINE L1 -5453 1163 422 4 999 209 250 0 0 chr12 54316965 54317009 -66940521 + (CCCCG)n Simple_repeat Simple_repeat 1 44 0 4 999 2329 219 105 85 chr12 54318673 54319557 -66937973 + RMER19B LTR ERVK 1 902 0 4 999 1096 87 0 0 chr12 54319946 54320084 -66937446 + B1_Mus2 SINE Alu 1 138 -9 4 999 194 0 39 0 chr12 54320084 54320110 -66937420 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 999 549 0 0 0 chr12 54320930 54320991 -66936539 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 999 516 198 0 0 chr12 54321019 54321110 -66936420 - B1_Mus2 SINE Alu -5 142 52 4 999 731 166 349 13 chr12 54322736 54322967 -66934563 + Lx5 LINE L1 6743 7050 0 4 999 280 247 36 24 chr12 54323147 54323230 -66934300 + PB1D7 SINE Alu 36 119 -1 4 999 612 316 120 58 chr12 54324153 54324809 -66932721 - L1ME3A LINE L1 -72 6101 5405 4 999 484 247 0 22 chr12 54325313 54325495 -66932035 + CT-rich Low_complexity Low_complexity 1 178 0 4 999 191 239 0 15 chr12 54325549 54325617 -66931913 + CT-rich Low_complexity Low_complexity 4 70 0 4 999 392 320 20 0 chr12 54325617 54325717 -66931813 - PB1D10 SINE Alu -15 102 1 4 999 334 327 27 0 chr12 54325620 54325730 -66931800 - ID_B1 SINE B4 -44 180 68 4 999 26 0 0 0 chr12 54326731 54326757 -66930773 + AT_rich Low_complexity Low_complexity 1 26 0 4 999 1112 238 162 0 chr12 54327091 54327431 -66930099 - Lx9 LINE L1 -25 7619 7225 4 999 1229 60 0 6 chr12 54327468 54327635 -66929895 + B2_Mm2 SINE B2 1 166 -29 4 999 297 333 120 20 chr12 54327798 54327948 -66929582 + B4 SINE B4 2 166 -126 4 999 397 0 38 0 chr12 54328052 54328105 -66929425 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 999 256 0 24 49 chr12 54328161 54328202 -66929328 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 999 234 91 0 0 chr12 54328215 54328248 -66929282 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 999 297 325 121 18 chr12 54328839 54329005 -66928525 + LTR16B1 LTR ERVL 79 261 -219 4 999 405 0 0 0 chr12 54329997 54330042 -66927488 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 999 653 224 94 13 chr12 54330490 54330639 -66926891 + B3A SINE B2 2 162 -36 4 999 247 210 139 55 chr12 54330672 54330764 -66926766 + PB1D9 SINE Alu 33 131 -19 4 999 318 152 0 0 chr12 54332420 54332479 -66925051 + CT-rich Low_complexity Low_complexity 2 60 0 4 999 238 295 0 0 chr12 54332675 54332736 -66924794 - MER5A DNA MER1_type -104 85 25 4 999 288 0 0 0 chr12 54333127 54333159 -66924371 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 999 21 36 0 0 chr12 54333350 54333378 -66924152 + AT_rich Low_complexity Low_complexity 1 28 0 4 999 349 223 0 28 chr12 54333443 54333549 -66923981 + CT-rich Low_complexity Low_complexity 2 104 0 4 999 436 244 0 11 chr12 54333559 54333650 -66923880 - PB1 SINE Alu -15 112 23 4 999 272 367 50 8 chr12 54333830 54333951 -66923579 + L2a LINE L2 3277 3402 -24 4 999 18501 72 29 13 chr12 54334111 54337254 -66920276 + MusHAL1 LINE L1 5 3207 -146 4 999 620 284 14 21 chr12 54337407 54337551 -66919979 + RSINE1 SINE B4 11 153 -12 4 999 180 111 0 0 chr12 54337551 54337578 -66919952 + (CG)n Simple_repeat Simple_repeat 1 27 0 4 999 252 0 0 0 chr12 54337578 54337605 -66919925 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 999 537 55 0 0 chr12 54337605 54337677 -66919853 + (GA)n Simple_repeat Simple_repeat 2 74 0 4 999 1280 48 5 87 chr12 54338081 54338265 -66919265 - L1_Mus1 LINE L1 0 6567 6399 4 999 228 329 12 0 chr12 54339544 54339626 -66917904 - L1M2 LINE L1 -364 5936 5854 4 999 207 0 0 0 chr12 54339991 54340014 -66917516 + (T)n Simple_repeat Simple_repeat 1 23 0 4 999 204 308 147 6 chr12 54340553 54340710 -66916820 - L3 LINE CR1 -52 4437 4259 4 999 755 21 0 11 chr12 54340905 54340999 -66916531 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 4 999 796 146 0 48 chr12 54340999 54341186 -66916344 + CT-rich Low_complexity Low_complexity 2 179 0 4 999 405 0 0 0 chr12 54341187 54341232 -66916298 + (TTTC)n Simple_repeat Simple_repeat 4 48 0 4 999 1234 284 100 75 chr12 54341607 54342112 -66915418 + Charlie1 DNA MER1_type 1782 2291 -490 4 999 743 258 98 0 chr12 54342112 54342306 -66915224 + B3 SINE B2 4 216 0 4 999 1234 284 100 75 chr12 54342306 54342729 -66914801 + Charlie1 DNA MER1_type 2292 2733 -48 4 999 490 318 28 28 chr12 54344121 54344302 -66913228 + MER5A DNA MER1_type 6 186 -3 4 999 333 109 0 0 chr12 54348149 54348204 -66909326 + (CAG)n Simple_repeat Simple_repeat 1 55 0 4 999 396 0 0 0 chr12 54349056 54349100 -66908430 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 999 198 171 0 0 chr12 54349466 54349507 -66908023 + (CCG)n Simple_repeat Simple_repeat 2 42 0 4 999 22 0 0 0 chr12 54349613 54349635 -66907895 + GC_rich Low_complexity Low_complexity 1 22 0 4 999 23 0 0 0 chr12 54351053 54351076 -66906454 + AT_rich Low_complexity Low_complexity 1 23 0 4 999 180 77 0 0 chr12 54351191 54351217 -66906313 + (T)n Simple_repeat Simple_repeat 1 26 0 4 999 221 0 0 33 chr12 54351619 54351649 -66905881 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 999 833 100 8 0 chr12 54353107 54353237 -66904293 + (GA)n Simple_repeat Simple_repeat 1 131 0 4 999 240 191 21 0 chr12 54353250 54353297 -66904233 + G-rich Low_complexity Low_complexity 1 48 0 4 999 249 252 8 40 chr12 54353509 54353633 -66903897 + (CCCG)n Simple_repeat Simple_repeat 3 122 0 4 999 26 0 0 0 chr12 54353648 54353674 -66903856 + GC_rich Low_complexity Low_complexity 1 26 0 4 999 204 184 0 0 chr12 54353840 54353889 -66903641 + (CCG)n Simple_repeat Simple_repeat 2 50 0 4 999 205 202 50 12 chr12 54353899 54353979 -66903551 + (CCCG)n Simple_repeat Simple_repeat 2 84 0 4 999 34 42 0 0 chr12 54354108 54354156 -66903374 + GC_rich Low_complexity Low_complexity 1 48 0 4 999 23 33 0 0 chr12 54354185 54354215 -66903315 + GC_rich Low_complexity Low_complexity 1 30 0 4 999 240 253 0 0 chr12 54354340 54354415 -66903115 + A-rich Low_complexity Low_complexity 1 75 0 4 999 201 241 0 0 chr12 54355897 54355951 -66901579 + CT-rich Low_complexity Low_complexity 2 55 0 4 999 363 44 0 0 chr12 54357758 54357803 -66899727 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 999 1225 68 14 9 chr12 54358737 54358970 -66898560 + (TG)n Simple_repeat Simple_repeat 1 234 0 4 999 225 0 0 0 chr12 54361337 54361362 -66896168 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 999 484 295 146 60 chr12 54361389 54361656 -66895874 - B4A SINE B4 0 292 3 4 999 504 202 12 16 chr12 54363860 54364083 -66893447 + CT-rich Low_complexity Low_complexity 1 222 0 4 999 455 0 18 0 chr12 54365971 54366026 -66891504 + (TTA)n Simple_repeat Simple_repeat 2 57 0 4 999 1292 201 72 139 chr12 54367445 54367833 -66889697 - ORR1D1 LTR MaLR -10 364 3 4 999 207 0 0 0 chr12 54368915 54368938 -66888592 + (T)n Simple_repeat Simple_repeat 1 23 0 4 999 474 299 15 7 chr12 54369596 54369731 -66887799 - B1F SINE Alu -1 148 13 4 999 347 296 20 72 chr12 54369731 54369749 -66887781 - ID_B1 SINE B4 -2 222 78 4 999 222 150 0 0 chr12 54370840 54370880 -66886650 + (TCCCC)n Simple_repeat Simple_repeat 4 43 0 4 999 22 35 0 0 chr12 54371144 54371173 -66886357 + AT_rich Low_complexity Low_complexity 1 29 0 4 999 1025 60 0 50 chr12 54371412 54371863 -66885667 + (TAGTG)n Simple_repeat Simple_repeat 1 428 0 4 999 378 0 0 0 chr12 54372879 54372921 -66884609 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 999 474 368 93 5 chr12 54373316 54373358 -66884172 - Lx8 LINE L1 -5 7468 7427 4 999 363 73 0 0 chr12 54373358 54373413 -66884117 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 4 999 474 368 93 5 chr12 54373413 54373799 -66883731 - Lx8 LINE L1 -47 7426 7003 4 999 597 248 8 0 chr12 54373876 54374009 -66883521 - Lx8 LINE L1 -605 6868 6735 4 999 1083 297 57 33 chr12 54374182 54374607 -66882923 + Lx8 LINE L1 5392 5826 -21 4 999 566 264 11 79 chr12 54374867 54374929 -66882601 + Lx8 LINE L1 6211 6260 -1213 4 999 926 221 54 0 chr12 54374929 54375133 -66882397 + B3 SINE B2 2 216 0 4 999 566 264 11 79 chr12 54375133 54375259 -66882271 + Lx8 LINE L1 6261 6386 -1087 4 999 1267 129 5 10 chr12 54375481 54375514 -66882016 - B2_Mm2 SINE B2 0 195 162 4 999 351 0 0 0 chr12 54375514 54375553 -66881977 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 4 999 1267 129 5 10 chr12 54375553 54375715 -66881815 - B2_Mm2 SINE B2 -34 161 1 4 999 21 0 0 0 chr12 54375926 54375947 -66881583 + AT_rich Low_complexity Low_complexity 1 21 0 5 999 208 121 33 49 chr12 54375968 54376029 -66881501 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 999 278 337 34 72 chr12 54376030 54376238 -66881292 - Lx8 LINE L1 -16 7457 7258 5 999 283 318 45 18 chr12 54376262 54376374 -66881156 - PB1 SINE Alu -9 118 4 5 999 212 0 36 0 chr12 54376583 54376611 -66880919 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 999 318 306 190 48 chr12 54376883 54377151 -66880379 - MLT1F2 LTR MaLR -78 482 177 5 999 303 330 92 71 chr12 54377182 54377378 -66880152 - MLT1F2 LTR MaLR -348 200 1 5 999 212 239 104 0 chr12 54377480 54377547 -66879983 + B4 SINE B4 1 74 -218 5 999 443 246 0 92 chr12 54377594 54377724 -66879806 + B4A SINE B4 175 292 0 5 999 574 326 96 55 chr12 54378747 54379062 -66878468 - MLT1C LTR MaLR -14 453 133 5 999 2067 142 15 18 chr12 54379062 54379392 -66878138 - ORR1A4 LTR MaLR 0 329 1 5 999 574 326 96 55 chr12 54379392 54379492 -66878038 - MLT1C LTR MaLR -335 132 21 5 999 221 154 0 0 chr12 54380087 54380126 -66877404 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 999 540 0 0 0 chr12 54380267 54380327 -66877203 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 999 474 254 22 66 chr12 54382056 54382237 -66875293 + MER2 DNA MER2_type 72 244 -101 5 999 198 0 0 0 chr12 54382296 54382318 -66875212 + (CAT)n Simple_repeat Simple_repeat 2 23 0 5 999 303 140 0 0 chr12 54382557 54382607 -66874923 + (T)n Simple_repeat Simple_repeat 1 50 0 5 999 189 0 0 0 chr12 54383089 54383110 -66874420 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 999 1045 202 19 24 chr12 54383294 54383507 -66874023 - B3 SINE B2 -2 214 3 5 999 21 0 0 0 chr12 54383523 54383544 -66873986 + AT_rich Low_complexity Low_complexity 1 21 0 5 999 426 20 0 0 chr12 54383726 54383777 -66873753 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 999 282 56 0 0 chr12 54383790 54383826 -66873704 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 999 329 289 40 32 chr12 54384183 54384439 -66873091 + Charlie7a DNA MER1_type 5 272 0 5 999 1118 35 7 0 chr12 54385098 54385241 -66872289 + (CA)n Simple_repeat Simple_repeat 2 145 0 5 999 908 147 34 34 chr12 54385310 54385458 -66872072 - B1_Mur4 SINE Alu -1 149 2 5 999 251 261 108 0 chr12 54385552 54385617 -66871913 + ID4_ SINE ID 1 72 -11 5 999 228 361 65 8 chr12 54386713 54386836 -66870694 + MIR SINE MIR 117 246 -16 5 999 359 284 4 4 chr12 54388515 54388744 -66868786 + (CA)n Simple_repeat Simple_repeat 1 229 0 5 999 237 244 0 0 chr12 54389194 54389239 -66868291 - AmnSINE1 SINE SINE -96 479 435 5 999 24 0 0 0 chr12 54389389 54389413 -66868117 + AT_rich Low_complexity Low_complexity 1 24 0 5 999 612 240 8 0 chr12 54390759 54390884 -66866646 - RSINE1 SINE B4 -36 129 4 5 999 503 226 29 10 chr12 54390935 54391038 -66866492 - PB1D10 SINE Alu -9 108 4 5 999 26 0 0 0 chr12 54394617 54394643 -66862887 + AT_rich Low_complexity Low_complexity 1 26 0 5 1000 193 336 79 36 chr12 54396215 54396354 -66861176 - L2b LINE L2 -6 3369 3225 5 1000 460 332 113 51 chr12 54397774 54398001 -66859529 - MamRep605 Unknown Unknown -78 798 560 5 1000 3175 56 10 8 chr12 54398001 54398394 -66859136 - MTA_Mm LTR MaLR 0 396 3 5 1000 460 332 113 51 chr12 54398394 54398502 -66859028 - MamRep605 Unknown Unknown -317 559 442 5 1000 472 244 179 45 chr12 54401572 54401960 -66855570 + L1MB5 LINE L1 5543 5983 -191 5 1000 219 36 0 0 chr12 54402731 54402759 -66854771 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1000 998 261 49 47 chr12 54403149 54403406 -66854124 + Lx8 LINE L1 6890 7153 -320 5 1000 3273 66 5 5 chr12 54403406 54403802 -66853728 - MTA_Mm LTR MaLR 0 396 1 5 1000 998 261 49 47 chr12 54403802 54403909 -66853621 + Lx8 LINE L1 7154 7255 -218 5 1000 1169 270 39 18 chr12 54404184 54404470 -66853060 + B4A SINE B4 1 292 0 5 1000 260 111 0 22 chr12 54404587 54404633 -66852897 + (TCC)n Simple_repeat Simple_repeat 2 46 0 5 1000 230 227 14 70 chr12 54405168 54405239 -66852291 + Tigger15a DNA TcMar 640 706 -9 5 1000 181 408 40 10 chr12 54405345 54405444 -66852086 - MIRm SINE MIR -18 258 157 5 1000 180 279 0 0 chr12 54406022 54406083 -66851447 + CT-rich Low_complexity Low_complexity 20 80 0 5 1000 606 208 0 19 chr12 54406093 54406140 -66851390 + polypyrimidine Low_complexity Low_complexity 117 162 0 5 1000 1064 133 0 6 chr12 54406140 54406321 -66851209 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1000 606 208 0 19 chr12 54406321 54406435 -66851095 + polypyrimidine Low_complexity Low_complexity 4 116 0 5 1000 328 276 0 54 chr12 54406435 54406527 -66851003 - ID_B1 SINE B4 0 224 138 5 1000 23 33 0 0 chr12 54407003 54407033 -66850497 + AT_rich Low_complexity Low_complexity 1 30 0 5 1000 219 347 37 80 chr12 54407388 54407576 -66849954 + L2b LINE L2 3187 3366 -9 5 1000 706 239 53 16 chr12 54407921 54408108 -66849422 + Lx8 LINE L1 6939 7132 -341 5 1000 255 253 100 33 chr12 54408526 54408616 -66848914 + MIRc SINE MIR 24 119 -149 5 1000 255 301 144 62 chr12 54409568 54409763 -66847767 + MIR SINE MIR 4 214 -48 5 1000 630 243 90 42 chr12 54412432 54412621 -66844909 + B3A SINE B2 1 198 0 5 1000 279 308 81 93 chr12 54413934 54414106 -66843424 - MIRc SINE MIR -34 234 65 5 1000 369 0 0 0 chr12 54417477 54417518 -66840012 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 5 1000 372 22 0 0 chr12 54417618 54417663 -66839867 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1000 360 0 0 0 chr12 54418591 54418631 -66838899 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1000 24 0 0 0 chr12 54418835 54418859 -66838671 + AT_rich Low_complexity Low_complexity 1 24 0 5 1000 261 315 77 23 chr12 54419020 54419150 -66838380 + L3 LINE CR1 2136 2272 -2217 5 1000 50 42 0 0 chr12 54419185 54419256 -66838274 + AT_rich Low_complexity Low_complexity 1 71 0 5 1000 234 62 0 0 chr12 54419256 54419288 -66838242 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1000 590 200 0 0 chr12 54419308 54419403 -66838127 - RSINE1 SINE B4 -70 95 1 5 1000 250 290 36 27 chr12 54420036 54420146 -66837384 + L3 LINE CR1 2773 2883 -1606 5 1000 197 265 96 58 chr12 54420793 54420897 -66836633 + MIRb SINE MIR 61 168 -100 5 1000 186 71 0 0 chr12 54421439 54421467 -66836063 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1000 788 237 79 90 chr12 54421667 54422010 -66835520 - MTEa LTR MaLR -38 341 3 5 1000 318 264 115 28 chr12 54422661 54422914 -66834616 + RMER17D2 LTR ERVK 160 434 -375 5 1000 231 164 0 83 chr12 54425112 54425172 -66832358 - L1P5 LINE L1 -311 5845 5791 5 1000 495 0 0 0 chr12 54426155 54426210 -66831320 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1000 181 279 15 200 chr12 54427021 54427151 -66830379 - L2c LINE L2 -16 3371 3266 5 1000 310 273 78 0 chr12 54427294 54427371 -66830159 - ID4_ SINE ID 0 83 1 5 1000 211 333 126 52 chr12 54427905 54428079 -66829451 + MIRb SINE MIR 34 220 -48 5 1000 274 289 136 84 chr12 54428255 54428410 -66829120 - RSINE1 SINE B4 0 165 3 5 1000 222 261 79 0 chr12 54428774 54428854 -66828676 + L2c LINE L2 3261 3349 -38 5 1000 182 118 0 29 chr12 54429730 54429765 -66827765 + (CCCCCT)n Simple_repeat Simple_repeat 6 39 0 5 1000 248 216 27 13 chr12 54429871 54429985 -66827545 + (TCCCG)n Simple_repeat Simple_repeat 1 115 0 5 1000 564 15 0 0 chr12 54430634 54430699 -66826831 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1000 369 0 0 0 chr12 54432158 54432199 -66825331 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1000 220 341 11 33 chr12 54432203 54432294 -66825236 + PB1D10 SINE Alu 26 114 -3 5 1000 360 88 0 0 chr12 54433324 54433381 -66824149 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1000 318 106 0 0 chr12 54435661 54435708 -66821822 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1000 21 0 0 0 chr12 54435724 54435745 -66821785 + AT_rich Low_complexity Low_complexity 1 21 0 5 1000 22 80 0 0 chr12 54436083 54436133 -66821397 + AT_rich Low_complexity Low_complexity 1 50 0 5 1000 183 210 90 75 chr12 54436931 54436998 -66820532 + L2b LINE L2 3296 3363 -12 5 1000 234 150 0 0 chr12 54437037 54437077 -66820453 + (CCA)n Simple_repeat Simple_repeat 1 40 0 5 1000 1182 123 66 5 chr12 54437425 54437621 -66819909 - URR1B DNA MER1_type -6 219 12 5 1000 701 281 19 63 chr12 54440528 54440733 -66816797 + B3A SINE B2 2 197 -1 5 1000 487 242 82 23 chr12 54440765 54440958 -66816572 + ORR1D2 LTR MaLR 158 368 -2 5 1000 697 272 81 17 chr12 54441331 54441544 -66815986 - B3A SINE B2 0 216 2 5 1000 243 0 0 0 chr12 54441924 54441951 -66815579 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1000 272 275 117 0 chr12 54441953 54442073 -66815457 + L1MA5 LINE L1 5803 5936 -364 5 1000 259 307 43 54 chr12 54445218 54445311 -66812219 - MLT1J2 LTR MaLR -282 166 75 5 1000 251 282 0 14 chr12 54445502 54445574 -66811956 + ID4 SINE ID 2 72 -11 5 1000 408 205 0 64 chr12 54446027 54446121 -66811409 + URR1B DNA MER1_type 1 88 -137 5 1000 291 281 0 15 chr12 54446138 54446203 -66811327 - ID4 SINE ID -11 72 9 5 1000 871 160 40 0 chr12 54446222 54446372 -66811158 + URR1B DNA MER1_type 67 222 -3 5 1000 440 184 10 0 chr12 54449039 54449142 -66808388 + GA-rich Low_complexity Low_complexity 2 105 0 5 1000 270 0 0 0 chr12 54452135 54452165 -66805365 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1000 25 0 0 0 chr12 54453320 54453345 -66804185 + AT_rich Low_complexity Low_complexity 1 25 0 5 1000 207 292 0 27 chr12 54454243 54454317 -66803213 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 5 1000 208 262 63 32 chr12 54454566 54454629 -66802901 + L4 LINE RTE 1758 1822 -207 5 1000 27 29 0 0 chr12 54458827 54458861 -66798669 + AT_rich Low_complexity Low_complexity 1 34 0 5 1000 21 0 0 0 chr12 54458991 54459012 -66798518 + AT_rich Low_complexity Low_complexity 1 21 0 5 1000 435 308 7 27 chr12 54459027 54459174 -66798356 - RSINE1 SINE B4 -19 146 3 6 1000 432 0 0 0 chr12 54459178 54459226 -66798304 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 6 1000 906 56 72 0 chr12 54459227 54459352 -66798178 - B1_Mus1 SINE Alu -6 142 9 6 1000 572 252 39 32 chr12 54459352 54459382 -66798148 - B4 SINE B4 -71 220 65 6 1000 460 288 0 0 chr12 54459457 54459568 -66797962 + PB1D10 SINE Alu 2 112 -5 6 1000 591 250 130 40 chr12 54459605 54459805 -66797725 + B4A SINE B4 69 286 -6 6 1000 450 0 0 0 chr12 54460527 54460577 -66796953 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 1000 288 0 0 0 chr12 54460578 54460610 -66796920 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1000 306 0 0 0 chr12 54460610 54460643 -66796887 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1000 353 304 109 23 chr12 54460652 54460780 -66796750 - RSINE1 SINE B4 -15 150 12 6 1000 226 265 107 12 chr12 54464074 54464158 -66793372 - MIRb SINE MIR -105 163 72 6 1000 204 300 0 16 chr12 54464182 54464243 -66793287 + GA-rich Low_complexity Low_complexity 1 60 0 6 1000 271 335 151 41 chr12 54465330 54465741 -66791789 - L2a LINE L2 -20 3406 2951 6 1000 522 0 0 0 chr12 54465929 54465987 -66791543 + (TTTC)n Simple_repeat Simple_repeat 4 61 0 6 1000 713 43 0 11 chr12 54465987 54466080 -66791450 + (TTCCC)n Simple_repeat Simple_repeat 2 94 0 6 1000 303 188 0 0 chr12 54466099 54466147 -66791383 - B1F1 SINE Alu -14 135 88 6 1000 838 206 7 0 chr12 54466159 54466305 -66791225 - B1_Mur1 SINE Alu 0 149 3 6 1000 1215 192 9 0 chr12 54468539 54468763 -66788767 + URR1A DNA MER1_type 1 226 0 6 1000 233 316 51 0 chr12 54469359 54469438 -66788092 + ID SINE ID 1 83 -141 6 1000 486 0 0 0 chr12 54469863 54469917 -66787613 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1000 1789 109 7 28 chr12 54470352 54470643 -66786887 - L1_Mus3 LINE L1 -1 6637 6353 6 1000 184 329 14 14 chr12 54470905 54470979 -66786551 - L2c LINE L2 -221 3166 3093 6 1000 252 295 88 18 chr12 54471426 54471540 -66785990 - Charlie14a DNA MER1_type -46 1118 997 6 1000 21 57 0 0 chr12 54472956 54472991 -66784539 + AT_rich Low_complexity Low_complexity 1 35 0 6 1000 230 0 33 0 chr12 54473114 54473144 -66784386 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 6 1000 314 203 0 0 chr12 54476157 54476216 -66781314 - ID4_ SINE ID -13 70 12 6 1000 219 133 0 0 chr12 54476503 54476548 -66780982 + (CAT)n Simple_repeat Simple_repeat 3 47 0 6 1000 396 0 0 0 chr12 54479322 54479366 -66778164 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1000 180 0 0 0 chr12 54479420 54479440 -66778090 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1000 6386 212 46 19 chr12 54479574 54481013 -66776517 - Lx6 LINE L1 -10 7450 5973 6 1000 1704 60 0 0 chr12 54481100 54481315 -66776215 - L1_Mus1 LINE L1 0 6567 6353 6 1000 347 117 33 0 chr12 54481315 54481375 -66776155 + L1_Mus1 LINE L1 5621 5682 -885 6 1000 231 281 0 45 chr12 54481409 54481476 -66776054 + L3 LINE CR1 3367 3430 -1059 6 1000 198 0 0 0 chr12 54482769 54482791 -66774739 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1000 549 206 28 14 chr12 54482865 54483152 -66774378 + (TG)n Simple_repeat Simple_repeat 1 291 0 6 1000 564 279 34 7 chr12 54483153 54483301 -66774229 - RSINE1 SINE B4 0 165 14 6 1000 3154 82 48 5 chr12 54486585 54487026 -66770504 + L1_Mus3 LINE L1 6178 6637 -1 6 1000 183 360 37 65 chr12 54487373 54487480 -66770050 + MIR3 SINE MIR 62 165 -43 6 1000 997 215 15 0 chr12 54488001 54488206 -66769324 - B3 SINE B2 -7 209 2 6 1000 450 101 0 0 chr12 54488292 54488361 -66769169 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1000 526 223 0 37 chr12 54488372 54488479 -66769051 - B4A SINE B4 0 292 190 6 1000 330 353 146 7 chr12 54488724 54489026 -66768504 - L1M5 LINE L1 -749 5397 5054 6 1000 3662 100 6 4 chr12 54489731 54490244 -66767286 + L1_Mus3 LINE L1 6113 6626 -12 6 1000 369 0 0 0 chr12 54490260 54490301 -66767229 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 6 1000 224 40 39 39 chr12 54490653 54490705 -66766825 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 6 1000 712 56 0 0 chr12 54490705 54490795 -66766735 - B1_Mus2 SINE Alu 0 147 58 6 1000 312 213 53 0 chr12 54494298 54494373 -66763157 + PB1 SINE Alu 25 103 -24 6 1000 627 14 0 0 chr12 54494373 54494445 -66763085 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 6 1000 2331 49 0 0 chr12 54494467 54494753 -66762777 - L1Md_F2 LINE L1 -12 6570 6285 6 1000 9267 64 18 2 chr12 54494754 54496021 -66761509 - L1_Mm LINE L1 -9 5874 4587 6 1000 1374 157 5 0 chr12 54496106 54496323 -66761207 - URR1B DNA MER1_type -1 224 7 6 1000 534 279 33 80 chr12 54496323 54496374 -66761156 + CYRA11_Mm Unknown Y-chromosome 196 427 -190 6 1000 422 100 0 0 chr12 54498837 54498897 -66758633 - URR1B DNA MER1_type -24 201 142 6 1000 644 254 99 45 chr12 54500068 54500291 -66757239 + Lx9 LINE L1 7011 7245 -399 1 1000 183 312 52 31 chr12 54501484 54501580 -66755950 + MIRm SINE MIR 61 158 -118 2 1000 1800 192 88 21 chr12 54501642 54502062 -66755468 + Lx9 LINE L1 7018 7465 -179 3 1000 378 0 0 0 chr12 54502065 54502107 -66755423 + (TATG)n Simple_repeat Simple_repeat 2 43 0 4 1000 298 183 61 0 chr12 54502120 54502202 -66755328 + Lx9 LINE L1 7552 7638 -6 3 1000 298 324 74 0 chr12 54503373 54503481 -66754049 - PB1D10 SINE Alu -1 116 1 5 1000 244 233 200 0 chr12 54503808 54503898 -66753632 - LTR50 LTR ERVL -332 463 356 6 1000 399 273 173 13 chr12 54504006 54504162 -66753368 - LTR50 LTR ERVL -612 183 3 6 1000 22 56 0 0 chr12 54504309 54504345 -66753185 + AT_rich Low_complexity Low_complexity 1 36 0 7 1000 480 351 121 28 chr12 54506871 54507226 -66750304 - MLT1J1 LTR MaLR -11 433 46 8 1000 455 256 48 60 chr12 54510423 54510589 -66746941 + MER5A1 DNA MER1_type 3 166 0 9 1000 249 159 0 0 chr12 54511006 54511050 -66746480 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1000 211 291 62 25 chr12 54513473 54513554 -66743976 + MIRm SINE MIR 96 179 -97 1 1000 210 158 17 34 chr12 54514227 54514286 -66743244 + (TTAA)n Simple_repeat Simple_repeat 3 60 0 1 1000 234 0 0 0 chr12 54514854 54514880 -66742650 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1 1000 1059 255 108 51 chr12 54515126 54515497 -66742033 + MTD LTR MaLR 21 398 -21 1 1000 420 20 0 0 chr12 54518051 54518100 -66739430 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1000 22 0 0 0 chr12 54518137 54518159 -66739371 + AT_rich Low_complexity Low_complexity 1 22 0 1 1000 772 271 98 26 chr12 54518631 54518896 -66738634 - B4A SINE B4 0 292 9 1 1000 24 0 0 0 chr12 54520154 54520178 -66737352 + AT_rich Low_complexity Low_complexity 1 24 0 1 1000 181 272 79 109 chr12 54521058 54521223 -66736307 - L3b LINE CR1 -301 181 22 1 1000 184 385 12 0 chr12 54522108 54522191 -66735339 - L2 LINE L2 -1419 2000 1917 2 1000 224 364 49 79 chr12 54525636 54525800 -66731730 - MIRb SINE MIR -71 197 39 2 1001 1431 50 0 0 chr12 54526102 54526282 -66731248 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1001 821 262 42 5 chr12 54527840 54528032 -66729498 - B4 SINE B4 0 292 94 2 1001 567 314 9 47 chr12 54528293 54528507 -66729023 - MER3 DNA MER1_type 0 209 4 2 1001 468 319 58 42 chr12 54531065 54531324 -66726206 - MLT2B4 LTR ERVL -293 263 1 2 1001 402 253 86 13 chr12 54531532 54531684 -66725846 - L1M6 LINE L1 -4638 1858 1696 2 1001 675 39 29 0 chr12 54531896 54531998 -66725532 - L1Md_F3 LINE L1 0 6584 6480 2 1001 243 0 0 0 chr12 54532706 54532733 -66724797 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1001 303 149 0 0 chr12 54533258 54533332 -66724198 + (CCA)n Simple_repeat Simple_repeat 1 74 0 2 1001 1042 203 14 5 chr12 54534271 54534484 -66723046 + B3 SINE B2 1 215 -1 3 1001 242 232 100 10 chr12 54535192 54535292 -66722238 + MER33 DNA MER1_type 103 211 -113 3 1001 334 247 29 58 chr12 54535371 54535474 -66722056 + MER33 DNA MER1_type 225 324 0 3 1001 205 122 71 24 chr12 54535686 54535728 -66721802 + CT-rich Low_complexity Low_complexity 3 46 0 3 1001 314 95 0 31 chr12 54535728 54535793 -66721737 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 1001 627 39 0 0 chr12 54536673 54536751 -66720779 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 3 1001 321 357 121 31 chr12 54537273 54537562 -66719968 - L1MC4a LINE L1 -1976 5906 5592 3 1001 366 300 89 45 chr12 54537807 54537964 -66719566 + MER20 DNA MER1_type 7 170 -49 3 1001 493 311 66 80 chr12 54538017 54538304 -66719226 - ORR1E LTR MaLR -6 353 71 3 1001 529 270 0 62 chr12 54539159 54539321 -66718209 - B3A SINE B2 -46 152 1 3 1001 452 48 16 0 chr12 54539615 54539678 -66717852 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1001 22 80 0 0 chr12 54540448 54540498 -66717032 + AT_rich Low_complexity Low_complexity 1 50 0 4 1001 351 0 0 0 chr12 54546534 54546573 -66710957 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 1001 225 0 0 0 chr12 54547472 54547497 -66710033 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1001 185 151 19 0 chr12 54548060 54548113 -66709417 + T-rich Low_complexity Low_complexity 1 54 0 4 1001 24 67 0 0 chr12 54548412 54548457 -66709073 + AT_rich Low_complexity Low_complexity 1 45 0 4 1001 182 320 0 20 chr12 54548502 54548553 -66708977 - MIRm SINE MIR -19 257 208 4 1001 243 0 0 0 chr12 54550064 54550091 -66707439 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1001 1151 51 0 0 chr12 54550091 54550228 -66707302 - B1_Mus1 SINE Alu -10 138 2 4 1001 249 109 0 0 chr12 54551979 54552025 -66705505 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1001 414 0 0 0 chr12 54552432 54552478 -66705052 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 4 1001 1788 216 40 2 chr12 54552478 54552994 -66704536 - Lx4B LINE L1 -80 6928 6371 5 1001 584 320 55 61 chr12 54554152 54554515 -66703015 - Tigger7 DNA MER2_type -1877 614 254 5 1001 277 352 28 14 chr12 54554521 54554662 -66702868 - Tigger7 DNA MER2_type -2343 148 6 5 1001 1075 229 9 32 chr12 54555252 54555473 -66702057 + B3 SINE B2 1 216 0 5 1001 297 0 0 0 chr12 54560056 54560089 -66697441 + (TTG)n Simple_repeat Simple_repeat 1 33 0 5 1001 1045 283 104 44 chr12 54560204 54561445 -66696085 - L1M4 LINE L1 -531 5649 4354 5 1001 180 0 0 0 chr12 54561445 54561465 -66696065 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1001 1045 293 128 55 chr12 54561465 54562003 -66695527 - L1M4 LINE L1 -1793 4353 3745 5 1001 23 0 0 0 chr12 54562180 54562203 -66695327 + AT_rich Low_complexity Low_complexity 1 23 0 5 1001 28 0 0 0 chr12 54562224 54562252 -66695278 + AT_rich Low_complexity Low_complexity 1 28 0 5 1001 368 307 0 11 chr12 54563144 54563233 -66694297 + PB1D10 SINE Alu 29 116 -1 5 1001 23 0 0 0 chr12 54563280 54563303 -66694227 + AT_rich Low_complexity Low_complexity 1 23 0 5 1001 1075 211 9 0 chr12 54563731 54563954 -66693576 + URR1B DNA MER1_type 1 225 0 6 1001 2011 231 155 31 chr12 54564096 54564806 -66692724 - RLTR40 LTR ERVK -4 813 16 6 1001 397 0 38 0 chr12 54566087 54566140 -66691390 + (TATG)n Simple_repeat Simple_repeat 1 55 0 6 1001 276 133 0 0 chr12 54566857 54566917 -66690613 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1001 1028 283 25 21 chr12 54566917 54567202 -66690328 - B4A SINE B4 0 292 7 6 1001 1095 298 96 2 chr12 54567460 54567898 -66689632 - Lx8 LINE L1 -34 7439 6961 6 1001 871 267 14 9 chr12 54568229 54568441 -66689089 + B3 SINE B2 4 216 0 6 1001 411 328 48 43 chr12 54571873 54572083 -66685447 + MER20 DNA MER1_type 7 217 -2 6 1001 243 217 59 45 chr12 54572748 54572857 -66684673 - MIR SINE MIR -60 148 41 6 1001 180 250 0 67 chr12 54573275 54573335 -66684195 + L2c LINE L2 3243 3298 -89 6 1001 182 263 0 0 chr12 54574137 54574175 -66683355 + L2c LINE L2 3327 3364 -23 6 1001 207 0 0 0 chr12 54574430 54574453 -66683077 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 7 1001 22 56 0 0 chr12 54574619 54574655 -66682875 + AT_rich Low_complexity Low_complexity 1 36 0 7 1001 383 319 67 12 chr12 54576200 54576365 -66681165 + B4A SINE B4 2 175 -117 7 1001 360 0 0 0 chr12 54576458 54576498 -66681032 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1001 258 342 8 60 chr12 54577114 54577270 -66680260 + MIR SINE MIR 14 166 -110 7 1001 2062 85 81 3 chr12 54578180 54578476 -66679054 - ORR1A2 LTR MaLR -8 319 1 7 1001 634 282 12 31 chr12 54578709 54578870 -66678660 + RSINE1 SINE B4 2 159 -6 7 1001 255 203 0 0 chr12 54581517 54581576 -66675954 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1001 36 0 0 0 chr12 54582199 54582235 -66675295 + AT_rich Low_complexity Low_complexity 1 36 0 7 1001 2142 138 0 15 chr12 54582235 54582574 -66674956 - Lx4A LINE L1 -1 7057 6724 7 1001 4182 125 19 0 chr12 54582630 54583271 -66674259 - L1_Mus4 LINE L1 -4 6632 5980 8 1001 366 232 0 21 chr12 54583479 54583620 -66673910 + (TG)n Simple_repeat Simple_repeat 1 138 0 8 1001 1254 354 93 56 chr12 54584882 54585342 -66672188 - MTE-int LTR MaLR -594 986 486 8 1001 579 15 0 0 chr12 54585342 54585410 -66672120 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 8 1001 1254 354 93 56 chr12 54585410 54585861 -66671669 - MTE-int LTR MaLR -1095 485 41 8 1001 513 295 38 59 chr12 54586035 54586273 -66671257 - ORR1E LTR MaLR -120 239 7 8 1001 659 195 86 0 chr12 54586442 54586570 -66670960 - B1_Mus1 SINE Alu -8 140 2 8 1001 987 17 0 0 chr12 54586772 54586889 -66670641 + (TC)n Simple_repeat Simple_repeat 2 118 0 8 1001 634 229 0 0 chr12 54586898 54587016 -66670514 - B1_Mur1 SINE Alu -27 122 5 8 1001 284 212 21 158 chr12 54586944 54587039 -66670491 - MT2B LTR ERVL -370 231 150 8 1001 530 235 48 84 chr12 54587541 54587708 -66669822 + RSINE1 SINE B4 3 163 -2 8 1001 446 265 171 52 chr12 54588524 54588735 -66668795 - ORR1E LTR MaLR -110 249 14 9 1001 401 271 0 0 chr12 54589687 54589772 -66667758 - RSINE1 SINE B4 -7 158 74 9 1001 192 97 0 0 chr12 54589994 54590025 -66667505 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 9 1001 421 357 28 0 chr12 54590246 54590389 -66667141 + RSINE1 SINE B4 3 149 -16 9 1001 360 43 0 0 chr12 54590391 54590437 -66667093 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1001 736 336 47 34 chr12 54590922 54591156 -66666374 + B4A SINE B4 56 292 0 9 1001 1612 106 57 8 chr12 54591266 54591513 -66666017 + Lx2 LINE L1 6731 6989 -8 9 1001 1137 128 0 0 chr12 54592445 54592625 -66664905 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 9 1001 429 20 0 0 chr12 54592626 54592676 -66664854 + (CCCCCT)n Simple_repeat Simple_repeat 5 54 0 9 1001 276 152 32 32 chr12 54592676 54592758 -66664772 + CT-rich Low_complexity Low_complexity 4 86 0 9 1001 912 132 0 0 chr12 54593326 54593478 -66664052 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 1 1001 5848 122 22 3 chr12 54596179 54597096 -66660434 - Lx3B LINE L1 -3 6970 6037 1 1001 280 281 152 18 chr12 54597866 54597997 -66659533 - MIR SINE MIR -95 173 20 1 1001 414 0 0 0 chr12 54598925 54598971 -66658559 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1001 260 315 50 43 chr12 54599249 54599531 -66657999 - L1MA6 LINE L1 -33 6267 5984 1 1001 254 281 183 30 chr12 54599772 54600054 -66657476 + MER102b DNA MER1_type 6 321 -20 1 1001 240 170 0 0 chr12 54600216 54600269 -66657261 + (CAAAC)n Simple_repeat Simple_repeat 3 55 0 1 1001 203 237 0 0 chr12 54600645 54600683 -66656847 + (CATG)n Simple_repeat Simple_repeat 2 39 0 1 1001 22 0 0 0 chr12 54603115 54603137 -66654393 + AT_rich Low_complexity Low_complexity 1 22 0 1 1001 668 237 23 0 chr12 54603331 54603462 -66654068 - B1_Mur2 SINE Alu -11 138 5 1 1001 21 57 0 0 chr12 54603748 54603783 -66653747 + AT_rich Low_complexity Low_complexity 1 35 0 1 1001 246 307 0 0 chr12 54603976 54604064 -66653466 + Lx7 LINE L1 7137 7224 -472 1 1001 225 196 0 0 chr12 54604184 54604230 -66653300 + T-rich Low_complexity Low_complexity 1 46 0 1 1001 21 57 0 0 chr12 54604270 54604305 -66653225 + AT_rich Low_complexity Low_complexity 1 35 0 1 1001 25 0 0 0 chr12 54604748 54604773 -66652757 + AT_rich Low_complexity Low_complexity 1 25 0 1 1001 767 288 5 0 chr12 54606699 54606897 -66650633 + B3 SINE B2 1 199 -17 1 1001 4037 63 4 0 chr12 54607008 54607544 -66649986 + L1_Mus1 LINE L1 6056 6567 0 1 1001 213 211 0 0 chr12 54608499 54608556 -66648974 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1001 1035 100 0 0 chr12 54610267 54610417 -66647113 + (GA)n Simple_repeat Simple_repeat 2 151 0 1 1001 494 103 0 13 chr12 54610417 54610496 -66647034 + (GGA)n Simple_repeat Simple_repeat 2 79 0 1 1001 333 118 0 0 chr12 54610496 54610547 -66646983 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 1 1001 804 21 0 0 chr12 54611534 54611628 -66645902 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 1 1001 604 280 113 13 chr12 54611680 54611919 -66645611 - Lx9 LINE L1 -312 7332 7070 1 1001 400 238 113 26 chr12 54611954 54612148 -66645382 + Lx9 LINE L1 7330 7540 -104 1 1001 213 281 0 11 chr12 54613026 54613116 -66644414 + (TTA)n Simple_repeat Simple_repeat 3 91 0 1 1001 374 289 0 0 chr12 54613119 54613195 -66644335 - ID4_ SINE ID -6 77 2 1 1001 266 0 29 0 chr12 54613529 54613563 -66643967 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1001 387 325 95 36 chr12 54614179 54614524 -66643006 - MLT1A0 LTR MaLR 0 374 1 1 1001 864 200 0 0 chr12 54617600 54617780 -66639750 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1001 873 194 0 0 chr12 54617742 54617922 -66639608 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1001 630 263 83 10 chr12 54621118 54621310 -66636220 - B3 SINE B2 -8 208 3 1 1001 299 220 42 42 chr12 54621469 54621489 -66636041 + ID_B1 SINE B4 130 224 0 1 1001 551 14 0 27 chr12 54621489 54621564 -66635966 + B1_Mur3 SINE Alu 75 147 -2 1 1001 225 24 23 45 chr12 54621582 54621626 -66635904 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1001 210 71 0 0 chr12 54621677 54621705 -66635825 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1001 228 35 0 0 chr12 54622315 54622344 -66635186 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1001 540 312 44 22 chr12 54622429 54622609 -66634921 - B4A SINE B4 -107 185 2 1 1001 222 300 0 0 chr12 54624223 54624293 -66633237 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1001 387 0 0 0 chr12 54626831 54626874 -66630656 + (TCC)n Simple_repeat Simple_repeat 2 44 0 1 1001 198 423 32 0 chr12 54627402 54627525 -66630005 - L3 LINE CR1 -854 3635 3509 1 1001 234 0 0 0 chr12 54629688 54629714 -66627816 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1001 267 250 0 0 chr12 54630510 54630562 -66626968 + B3 SINE B2 9 60 -156 1 1001 956 249 5 5 chr12 54630559 54630753 -66626777 + B3 SINE B2 12 205 -11 1 1001 183 42 0 0 chr12 54630754 54630778 -66626752 + (CAA)n Simple_repeat Simple_repeat 3 26 0 1 1001 1000 285 96 22 chr12 54630779 54631091 -66626439 + ORR1D2 LTR MaLR 20 354 -16 1 1001 217 191 0 0 chr12 54631505 54631547 -66625983 - MIRb SINE MIR -50 218 177 1 1001 293 339 0 0 chr12 54631952 54632017 -66625513 + ID4_ SINE ID 14 78 -5 1 1001 3295 45 0 10 chr12 54632135 54632543 -66624987 + L1Md_F2 LINE L1 6179 6582 0 1 1001 1162 82 0 0 chr12 54632556 54632703 -66624827 + B1_Mus1 SINE Alu 2 148 0 1 1001 284 279 138 43 chr12 54633061 54633177 -66624353 + MTEb LTR MaLR 249 375 -4 1 1001 230 170 40 60 chr12 54633298 54633348 -66624182 - RLTR46 LTR ERVK -271 49 1 1 1001 1213 202 58 20 chr12 54633348 54633692 -66623838 - IAPEz-int LTR ERVK 0 6481 6125 1 1001 604 123 114 0 chr12 54633709 54633823 -66623707 - IAPEY3-int LTR ERVK -342 7338 7196 1 1001 284 247 60 36 chr12 54634687 54634771 -66622759 - RSINE1 SINE B4 0 165 80 1 1001 187 29 56 28 chr12 54634784 54634820 -66622710 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1001 468 51 0 0 chr12 54636029 54636088 -66621442 + (CAA)n Simple_repeat Simple_repeat 2 60 0 1 1001 7189 51 8 20 chr12 54636270 54637569 -66619961 - L1Md_F2 LINE L1 0 6582 5306 1 1001 207 69 0 0 chr12 54637673 54637702 -66619828 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 1001 241 182 71 0 chr12 54638381 54638480 -66619050 + (TTATA)n Simple_repeat Simple_repeat 4 109 0 1 1001 189 74 0 0 chr12 54638845 54638872 -66618658 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1001 294 95 0 0 chr12 54640608 54640650 -66616880 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 1 1001 192 179 0 0 chr12 54640650 54640689 -66616841 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1001 21 0 0 0 chr12 54642628 54642649 -66614881 + AT_rich Low_complexity Low_complexity 1 21 0 1 1001 513 0 0 0 chr12 54643208 54643265 -66614265 + (TTA)n Simple_repeat Simple_repeat 2 58 0 1 1001 584 278 67 0 chr12 54643504 54643684 -66613846 + B3A SINE B2 2 193 -5 1 1001 403 187 9 9 chr12 54643756 54643869 -66613661 + GA-rich Low_complexity Low_complexity 2 114 0 1 1001 28 29 0 0 chr12 54643960 54643995 -66613535 + AT_rich Low_complexity Low_complexity 1 35 0 1 1001 238 36 89 0 chr12 54644662 54644718 -66612812 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1001 325 271 78 57 chr12 54644857 54644998 -66612532 - B1F1 SINE Alu -3 146 3 1 1001 240 324 18 44 chr12 54647252 54647273 -66610257 - B4A SINE B4 -99 193 86 1 1001 344 270 33 11 chr12 54647273 54647363 -66610167 - B1F1 SINE Alu -57 92 1 1 1001 261 315 25 93 chr12 54647363 54647437 -66610093 - MT2B2 LTR ERVL -427 157 95 1 1001 231 320 30 10 chr12 54647476 54647577 -66609953 + CT-rich Low_complexity Low_complexity 3 105 0 1 1001 521 188 79 86 chr12 54647587 54647727 -66609803 - B1F1 SINE Alu -9 140 2 1 1001 2250 170 45 15 chr12 54647779 54648179 -66609351 + MTC LTR MaLR 6 417 -4 1 1001 280 0 50 0 chr12 54648934 54648974 -66608556 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1001 243 88 0 0 chr12 54651443 54651477 -66606053 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1 1001 425 212 35 0 chr12 54652457 54652542 -66604988 + B4A SINE B4 1 88 -204 1 1001 215 305 20 59 chr12 54652542 54652558 -66604972 + BC1_Mm scRNA scRNA 1 97 -55 1 1001 261 0 0 0 chr12 54652848 54652877 -66604653 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1001 244 306 12 12 chr12 54653485 54653571 -66603959 - MIR3 SINE MIR -36 172 87 1 1001 551 218 7 0 chr12 54655462 54655609 -66601921 + GA-rich Low_complexity Low_complexity 1 148 0 1 1001 241 292 58 58 chr12 54656527 54656647 -66600883 - LTR16A1 LTR ERVL -7 449 330 1 1002 24 0 0 0 chr12 54657459 54657483 -66600047 + AT_rich Low_complexity Low_complexity 1 24 0 1 1002 183 80 0 0 chr12 54657610 54657635 -66599895 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1002 23 54 0 0 chr12 54658072 54658109 -66599421 + AT_rich Low_complexity Low_complexity 1 37 0 1 1002 231 167 0 0 chr12 54658109 54658151 -66599379 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1002 609 288 46 17 chr12 54658151 54658324 -66599206 - B3A SINE B2 -16 182 5 1 1002 812 132 51 14 chr12 54660028 54660166 -66597364 + B1_Mur4 SINE Alu 1 143 -7 1 1002 342 195 0 8 chr12 54660215 54660334 -66597196 + GA-rich Low_complexity Low_complexity 1 118 0 1 1002 1377 241 85 21 chr12 54661472 54661849 -66595681 + MTD LTR MaLR 5 405 -14 1 1002 356 295 126 44 chr12 54662554 54662689 -66594841 + MIRb SINE MIR 111 256 -12 1 1002 249 299 50 30 chr12 54663204 54663304 -66594226 + MIR SINE MIR 33 134 -74 1 1002 26 64 0 0 chr12 54663911 54663958 -66593572 + AT_rich Low_complexity Low_complexity 1 47 0 1 1002 186 191 0 0 chr12 54664057 54664099 -66593431 + CT-rich Low_complexity Low_complexity 1 42 0 1 1002 257 51 0 25 chr12 54664131 54664171 -66593359 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1002 355 239 0 71 chr12 54664201 54664300 -66593230 + Lx7 LINE L1 6989 7080 -616 1 1002 222 375 67 43 chr12 54664554 54664763 -66592767 - L2 LINE L2 -1030 2389 2176 1 1002 191 36 0 35 chr12 54664789 54664818 -66592712 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1002 711 191 73 0 chr12 54664820 54664956 -66592574 - B1_Mus1 SINE Alu -1 147 2 1 1002 279 274 16 131 chr12 54665403 54665525 -66592005 + RMER12 LTR ERVK 746 853 -469 1 1002 717 322 56 16 chr12 54665569 54665875 -66591655 - Lx9 LINE L1 -275 7369 7052 2 1002 2026 175 65 12 chr12 54666748 54667148 -66590382 - MTC LTR MaLR 0 421 1 2 1002 1216 54 0 0 chr12 54668910 54669058 -66588472 - B1_Mus1 SINE Alu 0 148 1 2 1002 261 0 0 0 chr12 54671125 54671154 -66586376 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1002 994 281 105 28 chr12 54671169 54671521 -66586009 + MTE2a LTR MaLR 1 379 0 2 1002 928 187 64 25 chr12 54675270 54675473 -66582057 - B3 SINE B2 -4 212 2 2 1002 233 140 18 0 chr12 54677218 54677275 -66580255 + (TGG)n Simple_repeat Simple_repeat 2 59 0 2 1002 220 242 16 16 chr12 54677923 54677986 -66579544 + CT-rich Low_complexity Low_complexity 4 66 0 2 1002 400 247 112 10 chr12 54678229 54678327 -66579203 + MTEa LTR MaLR 265 372 -7 2 1002 760 280 64 4 chr12 54678343 54678600 -66578930 + MTEa-int LTR MaLR 14 198 -1382 2 1002 322 268 52 26 chr12 54678629 54678744 -66578786 + MTE2b LTR MaLR 262 379 0 2 1002 247 253 71 24 chr12 54679226 54679311 -66578219 + MTEb LTR MaLR 287 375 -4 2 1002 286 271 125 17 chr12 54680656 54680776 -66576754 + MIRb SINE MIR 122 254 -14 2 1002 183 42 0 0 chr12 54681606 54681630 -66575900 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2 1002 253 419 22 7 chr12 54682225 54682362 -66575168 + MLT1K LTR MaLR 29 167 -428 2 1002 1014 25 0 0 chr12 54683309 54683430 -66574100 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 2 1002 800 167 13 1 chr12 54686201 54686347 -66571183 + B2_Mm2 SINE B2 2 159 -57 2 1002 516 16 0 0 chr12 54686353 54686414 -66571116 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 2 1002 468 128 0 0 chr12 54688409 54688487 -66569043 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1002 447 137 0 0 chr12 54689369 54689442 -66568088 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1002 24 53 0 0 chr12 54692591 54692629 -66564901 + AT_rich Low_complexity Low_complexity 1 38 0 2 1002 219 139 0 0 chr12 54692837 54692873 -66564657 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 2 1002 912 291 146 25 chr12 54692906 54693253 -66564277 - L1MA4 LINE L1 -371 5929 5490 2 1002 564 15 0 0 chr12 54693253 54693318 -66564212 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1002 912 294 127 35 chr12 54693318 54693816 -66563714 - L1MA4 LINE L1 -391 5489 4953 2 1002 189 0 0 0 chr12 54693816 54693837 -66563693 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2 1002 912 294 127 35 chr12 54693837 54694068 -66563462 - L1MA4 LINE L1 -928 4952 4712 2 1002 333 0 0 0 chr12 54694081 54694118 -66563412 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 2 1002 437 318 75 14 chr12 54694748 54694962 -66562568 + RMER15 LTR ERVL 346 572 -3 2 1002 214 261 0 0 chr12 54696878 54696943 -66560587 + T-rich Low_complexity Low_complexity 1 65 0 2 1002 554 176 5 11 chr12 54698184 54698376 -66559154 + CT-rich Low_complexity Low_complexity 1 190 0 2 1002 360 0 0 0 chr12 54698376 54698416 -66559114 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1002 328 321 18 27 chr12 54700108 54700220 -66557310 - MIRb SINE MIR -103 165 55 2 1002 430 29 88 0 chr12 54700227 54700295 -66557235 + (CATAT)n Simple_repeat Simple_repeat 2 75 0 2 1002 521 254 42 30 chr12 54700415 54700684 -66556846 + L1MB3 LINE L1 5631 5906 -277 2 1002 1199 292 27 30 chr12 54700667 54701037 -66556493 + Lx5 LINE L1 6665 7033 -17 2 1002 242 116 0 23 chr12 54701039 54701083 -66556447 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 2 1002 180 0 0 0 chr12 54701224 54701244 -66556286 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1002 226 293 20 20 chr12 54701721 54701822 -66555708 + GA-rich Low_complexity Low_complexity 1 101 0 2 1002 283 245 19 19 chr12 54702197 54702301 -66555229 - L1MB2 LINE L1 -101 6070 5967 2 1002 437 309 74 23 chr12 54702346 54702543 -66554987 - MLT1H1 LTR MaLR -293 256 5 2 1002 196 349 0 15 chr12 54702898 54702965 -66554565 + L2a LINE L2 3359 3424 -2 2 1002 950 230 90 0 chr12 54704707 54704907 -66552623 + URR1B DNA MER1_type 1 218 -7 2 1002 2430 52 64 0 chr12 54708003 54708329 -66549201 + L1_Mus2 LINE L1 6220 6566 0 2 1002 316 338 25 38 chr12 54709501 54709658 -66547872 - MIRb SINE MIR -1 267 113 2 1002 302 308 13 0 chr12 54710013 54710091 -66547439 + PB1 SINE Alu 13 91 -36 2 1002 321 26 0 0 chr12 54710112 54710150 -66547380 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1002 477 197 97 16 chr12 54710514 54710638 -66546892 + RMER1C Other Other 890 1023 -319 2 1002 246 62 0 0 chr12 54710918 54710950 -66546580 + (TCC)n Simple_repeat Simple_repeat 2 33 0 2 1002 218 101 116 41 chr12 54710997 54711049 -66546481 + MIR SINE MIR 61 123 -145 2 1002 231 208 0 0 chr12 54711402 54711455 -66546075 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 2 1002 262 350 61 55 chr12 54712002 54712295 -66545235 - Tigger15a DNA TcMar -192 523 229 2 1002 222 191 0 0 chr12 54714279 54714326 -66543204 + T-rich Low_complexity Low_complexity 1 47 0 2 1002 345 218 0 0 chr12 54714384 54714462 -66543068 + CT-rich Low_complexity Low_complexity 3 80 0 2 1002 277 329 12 37 chr12 54714615 54714697 -66542833 - ID4 SINE ID -1 82 3 2 1002 216 97 0 0 chr12 54715600 54715631 -66541899 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 2 1002 453 244 43 24 chr12 54717348 54717558 -66539972 + L1_Mur3 LINE L1 1308 1521 -4359 2 1002 189 0 0 0 chr12 54720318 54720339 -66537191 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1002 22 35 0 0 chr12 54720498 54720527 -66537003 + AT_rich Low_complexity Low_complexity 1 29 0 2 1002 32 0 0 0 chr12 54723246 54723278 -66534252 + AT_rich Low_complexity Low_complexity 1 32 0 2 1002 292 389 122 0 chr12 54723296 54723435 -66534095 - RSINE1 SINE B4 -8 157 2 2 1002 212 0 36 0 chr12 54724152 54724180 -66533350 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1002 428 280 107 15 chr12 54724206 54724402 -66533128 + MER2 DNA MER2_type 100 313 -32 2 1002 27 0 0 0 chr12 54726210 54726237 -66531293 + AT_rich Low_complexity Low_complexity 1 27 0 2 1002 241 262 0 16 chr12 54726396 54726458 -66531072 + (CATA)n Simple_repeat Simple_repeat 2 62 0 2 1002 221 316 119 8 chr12 54726998 54727116 -66530414 - MIRc SINE MIR -68 200 70 2 1002 470 248 149 0 chr12 54728319 54728460 -66529070 - ORR1D2 LTR MaLR -2 368 207 2 1002 418 67 0 0 chr12 54728451 54728511 -66529019 + B1_Mm SINE Alu 88 147 0 2 1002 309 151 0 0 chr12 54728511 54728564 -66528966 + A-rich Low_complexity Low_complexity 1 53 0 2 1002 761 228 58 6 chr12 54728564 54728736 -66528794 - ORR1D2 LTR MaLR -187 183 3 2 1002 228 170 0 0 chr12 54728922 54728975 -66528555 + CT-rich Low_complexity Low_complexity 3 55 0 2 1002 792 258 134 23 chr12 54729038 54729300 -66528230 - B4A SINE B4 -1 291 1 2 1002 641 90 30 0 chr12 54729903 54730003 -66527527 + (TCTCC)n Simple_repeat Simple_repeat 2 104 0 2 1002 257 27 54 0 chr12 54730135 54730172 -66527358 + (TCCCC)n Simple_repeat Simple_repeat 3 41 0 2 1002 186 245 19 19 chr12 54730482 54730536 -66526994 + L2c LINE L2 3319 3372 -15 2 1002 198 255 64 0 chr12 54730557 54730604 -66526926 + MIRm SINE MIR 209 258 -18 2 1002 241 245 0 0 chr12 54731039 54731092 -66526438 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 2 1002 211 323 134 26 chr12 54732230 54732402 -66525128 - MIR SINE MIR -77 185 3 2 1002 244 235 54 14 chr12 54733392 54733490 -66524040 + GA-rich Low_complexity Low_complexity 1 101 0 2 1002 570 15 0 0 chr12 54733835 54733902 -66523628 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1002 201 121 0 0 chr12 54734728 54734761 -66522769 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1002 429 70 0 0 chr12 54735765 54735822 -66521708 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1002 21 0 0 0 chr12 54735875 54735896 -66521634 + AT_rich Low_complexity Low_complexity 1 21 0 2 1002 1296 197 14 0 chr12 54735988 54736201 -66521329 - B3 SINE B2 0 216 1 2 1002 440 35 0 17 chr12 54736205 54736264 -66521266 + (TTTTA)n Simple_repeat Simple_repeat 3 60 0 2 1002 738 216 45 0 chr12 54736265 54736399 -66521131 - B1_Mur2 SINE Alu -9 140 1 2 1002 295 180 9 48 chr12 54736837 54736942 -66520588 + GA-rich Low_complexity Low_complexity 4 104 0 2 1002 244 62 21 0 chr12 54740045 54740093 -66517437 - L1_Mus4 LINE L1 0 6636 6588 2 1002 208 162 27 0 chr12 54741400 54741437 -66516093 + CT-rich Low_complexity Low_complexity 1 38 0 2 1002 223 360 89 6 chr12 54743238 54743417 -66514113 + L3 LINE CR1 4074 4267 -222 2 1002 663 125 0 0 chr12 54745350 54745454 -66512076 + (TAGA)n Simple_repeat Simple_repeat 3 106 0 2 1002 27 29 0 0 chr12 54745816 54745850 -66511680 + AT_rich Low_complexity Low_complexity 1 34 0 2 1002 376 312 62 31 chr12 54746466 54746595 -66510935 + RSINE1 SINE B4 16 148 -17 2 1002 180 0 0 0 chr12 54747283 54747303 -66510227 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1002 225 188 0 0 chr12 54747498 54747546 -66509984 + A-rich Low_complexity Low_complexity 4 51 0 2 1002 940 285 33 11 chr12 54747631 54747904 -66509626 + B4A SINE B4 4 282 -10 2 1002 180 0 0 0 chr12 54749125 54749145 -66508385 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 1002 212 329 47 60 chr12 54749731 54749880 -66507650 + MIR3 SINE MIR 39 185 -77 2 1002 213 338 125 14 chr12 54750816 54750960 -66506570 + MIRb SINE MIR 35 194 -74 2 1002 270 0 0 0 chr12 54751628 54751658 -66505872 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 2 1002 499 327 48 60 chr12 54751666 54751832 -66505698 - RSINE1 SINE B4 0 165 2 2 1002 23 33 0 0 chr12 54751849 54751879 -66505651 + AT_rich Low_complexity Low_complexity 1 30 0 2 1002 197 215 57 71 chr12 54753747 54753817 -66503713 - MIR SINE MIR -88 120 52 2 1002 526 56 45 0 chr12 54754676 54754765 -66502765 + (TCTCTG)n Simple_repeat Simple_repeat 2 94 0 2 1002 1216 102 0 0 chr12 54755234 54755401 -66502129 - B2_Mm2 SINE B2 -28 167 1 3 1002 445 333 6 32 chr12 54758390 54758548 -66498982 + RSINE1 SINE B4 3 156 -9 3 1002 213 39 0 0 chr12 54763160 54763186 -66494344 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 3 1002 279 273 136 23 chr12 54763461 54763648 -66493882 - MIRb SINE MIR -26 236 26 3 1002 26 0 0 0 chr12 54763660 54763686 -66493844 + AT_rich Low_complexity Low_complexity 1 26 0 3 1002 517 311 12 47 chr12 54763781 54763921 -66493609 + RSINE1 SINE B4 3 142 -23 3 1002 254 95 24 0 chr12 54763921 54763963 -66493567 + (CACTA)n Simple_repeat Simple_repeat 3 45 0 3 1002 517 311 12 47 chr12 54763963 54763991 -66493539 + RSINE1 SINE B4 143 165 0 3 1002 663 144 0 0 chr12 54764182 54764293 -66493237 + (TC)n Simple_repeat Simple_repeat 2 112 0 3 1002 1174 64 7 0 chr12 54767175 54767316 -66490214 + B1_Mus2 SINE Alu 5 146 -1 3 1002 216 0 0 0 chr12 54768954 54768978 -66488552 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 1002 274 318 98 18 chr12 54771207 54771319 -66486211 + MIR3 SINE MIR 55 175 -33 3 1002 477 307 31 0 chr12 54771528 54771691 -66485839 + L1MA5 LINE L1 5862 6029 -271 3 1002 189 0 0 0 chr12 54772279 54772300 -66485230 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1002 213 164 44 15 chr12 54773356 54773424 -66484106 + CT-rich Low_complexity Low_complexity 2 71 0 3 1002 3023 73 29 3 chr12 54773718 54774101 -66483429 - L1_Mus4 LINE L1 -6 6630 6238 3 1002 269 279 92 11 chr12 54776856 54776943 -66480587 - LTR48 LTR ERV1 -622 165 72 3 1002 1120 273 101 25 chr12 54778551 54779025 -66478505 + L1MA6 LINE L1 5791 6300 0 3 1002 24 32 0 0 chr12 54779870 54779901 -66477629 + AT_rich Low_complexity Low_complexity 1 31 0 3 1002 343 305 149 6 chr12 54780502 54780670 -66476860 + Lx8 LINE L1 6815 7006 -467 3 1002 648 200 7 48 chr12 54780671 54780818 -66476712 - URR1B DNA MER1_type 0 225 85 3 1002 1074 257 81 9 chr12 54780841 54781175 -66476355 + Lx8 LINE L1 6983 7352 -121 3 1002 23 0 0 0 chr12 54782686 54782709 -66474821 + AT_rich Low_complexity Low_complexity 1 23 0 3 1002 1695 244 41 16 chr12 54783051 54783439 -66474091 + MTD LTR MaLR 13 410 -9 3 1002 363 165 0 0 chr12 54783511 54783596 -66473934 + GA-rich Low_complexity Low_complexity 2 86 0 3 1002 25 31 0 0 chr12 54783754 54783786 -66473744 + AT_rich Low_complexity Low_complexity 1 32 0 3 1002 633 113 18 45 chr12 54787772 54787883 -66469647 - B1_Mur4 SINE Alu 0 150 43 3 1002 228 224 12 106 chr12 54787821 54787906 -66469624 - RLTR25B LTR ERVK -526 502 426 3 1002 1130 108 76 29 chr12 54787908 54788080 -66469450 - B2_Mm2 SINE B2 -14 181 2 3 1003 21 57 0 0 chr12 54788481 54788516 -66469014 + AT_rich Low_complexity Low_complexity 1 35 0 3 1003 196 53 26 26 chr12 54789190 54789229 -66468301 + (TTTTTG)n Simple_repeat Simple_repeat 1 39 0 3 1003 273 149 0 0 chr12 54789243 54789310 -66468220 + (T)n Simple_repeat Simple_repeat 1 67 0 3 1003 1246 48 7 0 chr12 54789311 54789457 -66468073 - B1_Mus1 SINE Alu -1 147 1 3 1003 180 282 64 64 chr12 54792049 54792174 -66465356 - L2c LINE L2 -20 3367 3243 3 1003 1437 109 0 5 chr12 54794635 54794829 -66462701 + B2_Mm2 SINE B2 1 193 -2 3 1003 234 91 0 0 chr12 54794829 54794862 -66462668 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1003 360 338 72 43 chr12 54794869 54795076 -66462454 + HAL1-3A_ME LINE L1 2284 2496 -362 3 1003 24 32 0 0 chr12 54796374 54796405 -66461125 + AT_rich Low_complexity Low_complexity 1 31 0 3 1003 930 66 0 0 chr12 54797519 54797641 -66459889 + (GGA)n Simple_repeat Simple_repeat 1 122 0 3 1003 267 313 80 72 chr12 54797891 54798142 -66459388 - L2 LINE L2 -1255 2164 1912 3 1003 198 0 0 0 chr12 54798522 54798544 -66458986 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 1003 234 354 0 0 chr12 54798598 54798663 -66458867 - MLT1L LTR MaLR -372 238 174 3 1003 191 341 53 45 chr12 54798701 54798833 -66458697 + MER5A DNA MER1_type 1 133 -56 3 1003 357 62 0 0 chr12 54800088 54800136 -66457394 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1003 180 0 0 0 chr12 54800136 54800156 -66457374 + (CCA)n Simple_repeat Simple_repeat 1 20 0 3 1003 774 281 72 36 chr12 54800315 54800592 -66456938 - B4A SINE B4 -5 287 1 3 1003 198 340 60 60 chr12 54800753 54800869 -66456661 + L2b LINE L2 3251 3366 -9 3 1003 261 281 67 10 chr12 54801426 54801530 -66456000 + MIRb SINE MIR 159 268 0 3 1003 235 350 35 55 chr12 54802138 54802283 -66455247 + L3 LINE CR1 4046 4187 -302 3 1003 21 0 0 0 chr12 54802629 54802650 -66454880 + AT_rich Low_complexity Low_complexity 1 21 0 3 1003 259 270 122 11 chr12 54803078 54803168 -66454362 + B4A SINE B4 91 190 -102 3 1003 683 280 123 37 chr12 54803473 54803822 -66453708 - MTEb LTR MaLR 0 379 1 3 1003 532 317 128 0 chr12 54806024 54806251 -66451279 - Lx8 LINE L1 -283 7190 6935 3 1003 980 286 60 8 chr12 54806854 54807122 -66450408 + B4A SINE B4 1 282 -10 3 1003 2472 164 29 21 chr12 54807137 54807555 -66449975 - MTC LTR MaLR 0 421 1 3 1003 206 276 17 0 chr12 54807561 54807619 -66449911 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1003 206 240 21 18 chr12 54809424 54809481 -66448049 + MIRm SINE MIR 26 83 -185 3 1003 326 59 59 0 chr12 54810064 54810115 -66447415 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 3 1003 4708 92 5 0 chr12 54810745 54811385 -66446145 - L1_Mus4 LINE L1 -232 5651 5009 3 1003 1084 8 0 0 chr12 54811383 54811502 -66446028 + L1_Mus4 LINE L1 5653 5771 -865 3 1003 4072 60 17 0 chr12 54811502 54811984 -66445546 + L1_Mus1 LINE L1 6078 6567 0 3 1003 679 196 45 14 chr12 54811984 54812021 -66445509 + L1MB7 LINE L1 5804 5856 -328 3 1003 258 32 0 0 chr12 54812021 54812052 -66445478 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 3 1003 618 210 104 12 chr12 54812052 54812068 -66445462 + L1MB7 LINE L1 5857 5872 -312 3 1003 370 286 143 0 chr12 54812401 54812506 -66445024 + PB1 SINE Alu 1 120 -7 3 1003 367 284 45 0 chr12 54812524 54812612 -66444918 - B1F1 SINE Alu -57 92 1 3 1003 507 298 45 26 chr12 54812988 54813143 -66444387 + RSINE1 SINE B4 2 159 -6 3 1003 744 167 114 0 chr12 54813271 54813403 -66444127 - B1_Mus1 SINE Alu 0 148 2 3 1003 405 213 8 6 chr12 54813407 54813499 -66444031 - PB1D10 SINE Alu -56 93 1 3 1003 630 0 0 0 chr12 54816709 54816779 -66440751 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1003 632 248 0 0 chr12 54817654 54817771 -66439759 - B1_Mus1 SINE Alu -31 117 1 3 1003 23 0 0 0 chr12 54818119 54818142 -66439388 + AT_rich Low_complexity Low_complexity 1 23 0 3 1003 227 445 7 0 chr12 54818196 54818333 -66439197 - L3 LINE CR1 -59 4430 4293 3 1003 192 40 0 0 chr12 54819660 54819685 -66437845 + (TGG)n Simple_repeat Simple_repeat 1 25 0 3 1003 194 338 170 13 chr12 54820850 54821009 -66436521 - L3 LINE CR1 -3486 1003 820 3 1003 340 264 44 0 chr12 54821321 54821412 -66436118 - L3 LINE CR1 -4252 237 143 3 1003 831 37 0 0 chr12 54822212 54822319 -66435211 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 1003 926 258 14 0 chr12 54823710 54823923 -66433607 + MER58A DNA MER1_type 7 222 -2 3 1003 1008 279 30 0 chr12 54824947 54825216 -66432314 - B4A SINE B4 -14 278 2 3 1003 398 234 31 41 chr12 54826028 54826126 -66431404 + B1F SINE Alu 38 134 -15 3 1003 360 64 0 0 chr12 54826127 54826174 -66431356 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 3 1003 246 233 16 16 chr12 54826244 54826305 -66431225 + GA-rich Low_complexity Low_complexity 5 65 0 3 1003 3420 33 0 90 chr12 54828737 54829172 -66428358 - MTA_Mm LTR MaLR 0 396 1 3 1003 335 269 64 63 chr12 54832282 54832442 -66425088 + ORR1E LTR MaLR 6 189 -181 3 1003 502 321 127 39 chr12 54833070 54833329 -66424201 - B4A SINE B4 -10 282 1 3 1003 239 302 64 36 chr12 54835205 54835315 -66422215 + MLT1I LTR MaLR 30 142 -269 3 1003 255 299 64 21 chr12 54835393 54835533 -66421997 + MLT1I LTR MaLR 252 397 -14 3 1003 24 0 0 0 chr12 54836289 54836313 -66421217 + AT_rich Low_complexity Low_complexity 1 24 0 3 1003 21 0 0 0 chr12 54837062 54837083 -66420447 + AT_rich Low_complexity Low_complexity 1 21 0 3 1003 314 324 62 40 chr12 54838215 54838392 -66419138 - MIRb SINE MIR -16 252 72 3 1003 350 188 10 0 chr12 54838761 54838857 -66418673 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 1003 285 146 0 0 chr12 54838854 54838902 -66418628 + (CCA)n Simple_repeat Simple_repeat 3 50 0 3 1003 22 0 0 0 chr12 54840640 54840662 -66416868 + AT_rich Low_complexity Low_complexity 1 22 0 3 1003 194 303 124 0 chr12 54841415 54841504 -66416026 - MIR SINE MIR -52 210 111 3 1003 668 251 0 12 chr12 54841764 54841929 -66415601 + B3A SINE B2 36 198 0 3 1003 327 322 95 27 chr12 54842052 54842199 -66415331 - MLT1G1 LTR MaLR -1 578 422 3 1003 315 288 119 25 chr12 54843721 54843881 -66413649 - L2a LINE L2 -151 3275 3101 3 1003 2427 152 15 17 chr12 54843942 54844350 -66413180 - MTB_Mm LTR MaLR 0 407 1 3 1003 495 307 30 50 chr12 54845306 54845508 -66412022 + MER58A DNA MER1_type 24 221 -3 3 1003 738 254 15 10 chr12 54846247 54846450 -66411080 - B3 SINE B2 0 216 13 3 1003 2095 167 52 45 chr12 54846586 54847051 -66410479 + RLTR28B LTR ERVL 1 468 -13 3 1003 882 242 80 13 chr12 54847062 54847288 -66410242 + B4 SINE B4 40 280 -12 3 1003 24 0 0 0 chr12 54847359 54847383 -66410147 + AT_rich Low_complexity Low_complexity 1 24 0 3 1003 4280 52 0 2 chr12 54848950 54849473 -66408057 - L1_Mus1 LINE L1 0 6567 6046 3 1003 217 148 18 36 chr12 54851455 54851511 -66406019 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1003 2820 292 109 26 chr12 54851517 54852626 -66404904 - Lx8 LINE L1 0 7473 6273 3 1003 510 17 0 0 chr12 54852632 54852691 -66404839 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1003 210 333 63 53 chr12 54857484 54857690 -66399840 - L2a LINE L2 -6 3420 3213 4 1003 1247 168 14 5 chr12 54858354 54858576 -66398954 - URR1B DNA MER1_type 0 225 2 4 1003 236 261 42 28 chr12 54859696 54859767 -66397763 + Zaphod2 DNA Tip100 3443 3514 -10 4 1003 21 36 0 0 chr12 54860882 54860910 -66396620 + AT_rich Low_complexity Low_complexity 1 28 0 4 1003 444 118 0 0 chr12 54861322 54861390 -66396140 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1003 314 339 50 57 chr12 54861571 54861868 -66395662 + L2a LINE L2 3005 3299 -127 4 1003 799 260 56 22 chr12 54862334 54862566 -66394964 + MTE2b LTR MaLR 88 327 -52 4 1003 1091 213 116 4 chr12 54862577 54862898 -66394632 + L1MC1 LINE L1 5526 5883 -450 4 1003 1001 239 70 102 chr12 54862912 54863285 -66394245 - MTE2a LTR MaLR -14 365 5 4 1003 449 240 168 45 chr12 54863301 54863593 -66393937 + L1MC1 LINE L1 5894 6221 -112 4 1003 288 271 203 0 chr12 54863806 54863924 -66393606 + B4A SINE B4 1 142 -150 4 1003 432 0 0 0 chr12 54864103 54864151 -66393379 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1003 636 26 0 0 chr12 54864151 54864228 -66393302 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 1003 443 318 16 8 chr12 54864886 54865088 -66392442 + L1MA6 LINE L1 6101 6300 0 4 1003 23 0 0 0 chr12 54865944 54865967 -66391563 + AT_rich Low_complexity Low_complexity 1 23 0 4 1003 227 247 14 0 chr12 54867573 54867646 -66389884 + GA-rich Low_complexity Low_complexity 3 76 0 4 1003 567 0 0 0 chr12 54871159 54871222 -66386308 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 1003 304 294 0 45 chr12 54872891 54872980 -66384550 + ID SINE ID 1 85 -139 4 1003 687 271 29 0 chr12 54872969 54873139 -66384391 + ID_B1 SINE B4 44 218 -6 4 1003 728 47 19 0 chr12 54873169 54873276 -66384254 + B1_Mur3 SINE Alu 41 149 0 4 1003 434 272 9 28 chr12 54874681 54874787 -66382743 + PB1D10 SINE Alu 9 112 -5 4 1003 520 323 49 21 chr12 54875097 54875426 -66382104 - L1MA6 LINE L1 -54 6246 5909 4 1003 261 310 96 17 chr12 54876233 54876348 -66381182 - PB1 SINE Alu -2 125 2 4 1003 209 346 125 8 chr12 54877615 54877743 -66379787 - L2b LINE L2 -9 3366 3224 4 1003 1020 92 42 0 chr12 54878879 54879021 -66378509 - B1_Mus1 SINE Alu 0 148 1 4 1003 222 260 57 57 chr12 54879089 54879195 -66378335 + L2a LINE L2 3320 3425 -1 4 1003 333 0 0 0 chr12 54879260 54879297 -66378233 + (CATA)n Simple_repeat Simple_repeat 1 37 0 4 1003 26 50 0 0 chr12 54879926 54879966 -66377564 + AT_rich Low_complexity Low_complexity 1 40 0 4 1003 23 0 0 0 chr12 54880948 54880971 -66376559 + AT_rich Low_complexity Low_complexity 1 23 0 4 1003 189 74 0 0 chr12 54883897 54883924 -66373606 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1003 288 0 0 0 chr12 54884561 54884593 -66372937 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1003 188 303 12 62 chr12 54884657 54884738 -66372792 - MER5A DNA MER1_type -27 162 86 4 1003 222 86 0 79 chr12 54884919 54884982 -66372548 + CT-rich Low_complexity Low_complexity 2 59 0 4 1003 511 292 116 21 chr12 54886075 54886316 -66371214 + B4A SINE B4 1 264 -28 4 1003 270 81 0 0 chr12 54886461 54886498 -66371032 + (TAA)n Simple_repeat Simple_repeat 2 38 0 4 1003 203 286 57 0 chr12 54886500 54886570 -66370960 - MIRb SINE MIR -6 262 189 4 1003 191 320 122 23 chr12 54886655 54886786 -66370744 - MIR3 SINE MIR -62 146 3 4 1003 553 304 0 92 chr12 54888051 54888236 -66369294 + B4A SINE B4 1 168 -124 4 1003 2087 189 53 2 chr12 54888775 54889205 -66368325 + RMER15 LTR ERVL 124 575 0 4 1003 235 250 26 43 chr12 54889205 54889322 -66368208 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 1003 227 209 0 0 chr12 54889330 54889373 -66368157 + MLT1F-int LTR MaLR 1071 1113 -376 4 1003 303 304 71 21 chr12 54889403 54889544 -66367986 + MER58A DNA MER1_type 58 205 -19 4 1003 384 310 52 31 chr12 54890257 54890450 -66367080 + MIRb SINE MIR 54 250 -18 4 1003 459 0 0 0 chr12 54893171 54893222 -66364308 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1003 290 264 0 11 chr12 54896550 54896638 -66360892 + PB1D10 SINE Alu 30 116 -1 4 1003 183 305 48 12 chr12 54897346 54897429 -66360101 + L2a LINE L2 3317 3402 -24 4 1003 743 291 91 32 chr12 54897608 54898013 -66359517 - MLT1C LTR MaLR -27 440 12 4 1003 206 290 0 14 chr12 54898846 54898916 -66358614 + A-rich Low_complexity Low_complexity 1 69 0 4 1003 1171 88 0 0 chr12 54899277 54899424 -66358106 + B1_Mm SINE Alu 1 147 0 4 1003 736 270 174 47 chr12 54904399 54904978 -66352552 - L1MD1 LINE L1 -260 5982 5330 4 1003 990 294 105 25 chr12 54906117 54906595 -66350935 - RMER5 LTR ERV1 -17 517 2 4 1003 247 302 91 46 chr12 54906709 54906894 -66350636 + B3 SINE B2 2 198 0 4 1003 211 282 60 59 chr12 54908908 54909005 -66348525 + L2b LINE L2 3293 3426 0 4 1003 25 51 0 0 chr12 54909184 54909223 -66348307 + AT_rich Low_complexity Low_complexity 1 39 0 4 1003 21 36 0 0 chr12 54909678 54909706 -66347824 + AT_rich Low_complexity Low_complexity 1 28 0 4 1003 1308 134 18 5 chr12 54911606 54911823 -66345707 + URR1B DNA MER1_type 1 220 -5 4 1003 480 271 41 70 chr12 54911823 54911846 -66345684 - CYRA11_Mm Unknown Y-chromosome -227 388 156 4 1003 246 32 0 0 chr12 54912889 54912920 -66344610 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 4 1003 393 149 0 0 chr12 54912921 54912988 -66344542 + (T)n Simple_repeat Simple_repeat 1 67 0 4 1003 202 127 35 35 chr12 54913790 54913847 -66343683 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 4 1003 425 315 32 38 chr12 54916945 54917130 -66340400 + MLT1A LTR MaLR 189 372 -2 4 1003 321 352 71 7 chr12 54917663 54917803 -66339727 - B4A SINE B4 -4 288 140 4 1003 1269 67 22 6 chr12 54918265 54918444 -66339086 - L1_Mus3 LINE L1 -6 6632 6451 4 1004 416 340 99 26 chr12 54921882 54922154 -66335376 - B4A SINE B4 0 292 1 4 1004 1461 289 102 55 chr12 54922206 54923376 -66334154 + L1MA6 LINE L1 5027 6251 -49 4 1004 23 0 0 0 chr12 54924477 54924500 -66333030 + AT_rich Low_complexity Low_complexity 1 23 0 4 1004 212 306 52 43 chr12 54925734 54925850 -66331680 + MIRc SINE MIR 42 158 -110 4 1004 333 0 0 0 chr12 54925974 54926011 -66331519 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1004 255 170 0 0 chr12 54926773 54926820 -66330710 + GA-rich Low_complexity Low_complexity 1 47 0 4 1004 290 115 0 19 chr12 54928919 54928972 -66328558 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1004 705 274 34 21 chr12 54929035 54929270 -66328260 - B4A SINE B4 -6 286 49 4 1004 298 283 77 35 chr12 54929544 54929687 -66327843 + B1F1 SINE Alu 1 149 0 4 1004 294 200 21 83 chr12 54931291 54931409 -66326121 - MLT1A1 LTR MaLR -32 376 233 4 1004 680 52 14 69 chr12 54935832 54935976 -66321554 + (TAGA)n Simple_repeat Simple_repeat 2 137 0 4 1004 23 78 0 0 chr12 54936431 54936482 -66321048 + AT_rich Low_complexity Low_complexity 1 51 0 4 1004 200 154 0 25 chr12 54936565 54936605 -66320925 - L4 LINE RTE -215 1814 1776 4 1004 618 131 0 0 chr12 54937049 54937148 -66320382 + (CACG)n Simple_repeat Simple_repeat 1 99 0 4 1004 258 345 0 57 chr12 54937742 54937758 -66319772 + RMER12 LTR ERVK 742 757 -565 4 1004 180 0 0 0 chr12 54937758 54937778 -66319752 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1004 258 345 0 57 chr12 54937778 54937884 -66319646 + RMER12 LTR ERVK 758 857 -465 4 1004 486 33 0 0 chr12 54941263 54941323 -66316207 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1004 249 98 0 0 chr12 54941684 54941725 -66315805 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1004 219 36 0 0 chr12 54942031 54942059 -66315471 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1004 303 190 177 0 chr12 54944346 54944425 -66313105 - MIR SINE MIR -109 153 61 4 1004 564 195 228 0 chr12 54945560 54945683 -66311847 + B3A SINE B2 1 151 -47 4 1004 220 176 19 19 chr12 54947187 54947239 -66310291 + GA-rich Low_complexity Low_complexity 1 52 0 4 1004 291 302 72 10 chr12 54948375 54948472 -66309058 + B4A SINE B4 2 104 -188 4 1004 414 39 0 0 chr12 54948497 54948549 -66308981 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1004 686 292 35 111 chr12 54949853 54950230 -66307300 - ORR1E LTR MaLR -5 354 7 4 1004 220 176 80 34 chr12 54950295 54950383 -66307147 + (GTTTG)n Simple_repeat Simple_repeat 3 94 0 4 1004 367 315 0 0 chr12 54950411 54950522 -66307008 - B1F SINE Alu -38 111 1 4 1004 2983 306 111 50 chr12 54950529 54951333 -66306197 - MTEb-int LTR MaLR -132 1448 559 4 1004 701 267 20 0 chr12 54951333 54951483 -66306047 - RSINE1 SINE B4 -8 157 5 4 1004 2983 306 111 50 chr12 54951483 54952043 -66305487 - MTEb-int LTR MaLR -1022 558 1 4 1004 404 245 107 27 chr12 54952043 54952197 -66305333 - MTEb LTR MaLR 0 379 210 4 1004 180 329 68 0 chr12 54952486 54952559 -66304971 + MIR SINE MIR 76 153 -109 4 1004 24 32 0 0 chr12 54953767 54953798 -66303732 + AT_rich Low_complexity Low_complexity 1 31 0 4 1004 2616 215 105 25 chr12 54954595 54955235 -66302295 - Lx2B LINE L1 -5 6995 6305 4 1004 21 0 0 0 chr12 54955235 54955256 -66302274 + AT_rich Low_complexity Low_complexity 1 21 0 4 1004 920 222 85 10 chr12 54956016 54956216 -66301314 + B3 SINE B2 2 216 0 4 1004 338 224 0 56 chr12 54956264 54956335 -66301195 - B1_Mur2 SINE Alu -34 115 49 4 1004 274 23 47 0 chr12 54956339 54956382 -66301148 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 4 1004 862 181 20 14 chr12 54956390 54956536 -66300994 - B1_Mm SINE Alu 0 147 1 4 1004 564 310 62 68 chr12 54957286 54957622 -66299908 + Charlie4a DNA MER1_type 1 334 -174 5 1004 580 271 38 19 chr12 54957622 54957780 -66299750 + RSINE1 SINE B4 3 163 -2 5 1004 300 298 71 71 chr12 54957880 54957898 -66299632 - PB1 SINE Alu -2 125 115 5 1004 2668 37 40 0 chr12 54957898 54958219 -66299311 - L1Md_F3 LINE L1 0 6584 6251 5 1004 518 237 0 0 chr12 54958219 54958312 -66299218 - PB1D9 SINE Alu -14 106 14 5 1004 341 268 0 0 chr12 54958384 54958455 -66299075 + PB1D10 SINE Alu 22 92 -25 5 1004 771 92 8 16 chr12 54958883 54959005 -66298525 - Lx LINE L1 -7 6647 6527 5 1004 332 262 12 23 chr12 54960340 54960426 -66297104 + B4A SINE B4 2 86 -206 5 1004 237 33 0 0 chr12 54960643 54960673 -66296857 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1004 956 233 78 0 chr12 54961754 54961947 -66295583 - B3 SINE B2 -7 209 2 5 1004 274 256 0 114 chr12 54961979 54962067 -66295463 + ID4_ SINE ID 6 83 0 5 1004 25 51 0 0 chr12 54964034 54964073 -66293457 + AT_rich Low_complexity Low_complexity 1 39 0 5 1004 972 202 39 50 chr12 54964117 54964351 -66293179 + B3 SINE B2 8 216 0 5 1004 3515 35 2 15 chr12 54964633 54965036 -66292494 - MTB LTR MaLR 0 400 3 5 1004 1356 280 91 30 chr12 54967733 54968293 -66289237 - Lx8 LINE L1 -1 7472 6879 5 1004 245 304 0 0 chr12 54968513 54968569 -66288961 + MIR3 SINE MIR 130 185 -23 5 1004 228 163 0 0 chr12 54970162 54970205 -66287325 + GA-rich Low_complexity Low_complexity 2 44 0 5 1004 180 0 0 0 chr12 54974417 54974437 -66283093 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1004 200 291 8 127 chr12 54974789 54974915 -66282615 - MIRb SINE MIR -91 177 67 5 1004 330 26 0 0 chr12 54976188 54976227 -66281303 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1004 303 93 0 0 chr12 54976510 54976553 -66280977 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1004 379 335 130 8 chr12 54976571 54976818 -66280712 + L1ME1 LINE L1 357 633 -5767 5 1004 298 254 152 38 chr12 54977208 54977551 -66279979 + L1ME1 LINE L1 794 1175 -5225 5 1004 505 220 88 52 chr12 54977618 54977810 -66279720 + L1ME1 LINE L1 1321 1519 -4881 5 1004 891 312 146 31 chr12 54977890 54979239 -66278291 + L1ME1 LINE L1 1812 3335 -2984 5 1004 450 356 60 41 chr12 54979306 54979792 -66277738 + L1ME1 LINE L1 4138 4632 -1687 5 1004 747 201 29 29 chr12 54979803 54979941 -66277589 + B1_Mur2 SINE Alu 1 138 -11 5 1004 606 257 21 0 chr12 54979989 54980129 -66277401 + ID_B1 SINE B4 82 224 0 5 1004 198 0 0 0 chr12 54980145 54980167 -66277363 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 5 1004 564 298 103 53 chr12 54980167 54980462 -66277068 + L1ME1 LINE L1 4630 4947 -1372 5 1004 402 57 0 0 chr12 54980462 54980515 -66277015 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1004 564 298 103 53 chr12 54980515 54980783 -66276747 + L1ME1 LINE L1 4948 5221 -1098 5 1004 251 259 143 0 chr12 54980923 54981035 -66276495 + L1MC LINE L1 5204 5331 -815 5 1004 444 307 104 46 chr12 54981250 54981595 -66275935 + L1ME1 LINE L1 5708 6072 -280 5 1004 22 35 0 0 chr12 54982221 54982250 -66275280 + AT_rich Low_complexity Low_complexity 1 29 0 5 1004 469 300 104 65 chr12 54983568 54983846 -66273684 + B4 SINE B4 3 291 -1 5 1004 230 338 0 24 chr12 54985361 54985443 -66272087 - ID2 SINE ID -3 80 1 5 1004 2375 136 24 24 chr12 54986850 54987266 -66270264 - RLTR31_Mm LTR ERVK -145 416 1 5 1004 252 0 0 0 chr12 54989659 54989687 -66267843 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1004 199 184 0 0 chr12 54990427 54990465 -66267065 + L2c LINE L2 3349 3386 -1 5 1004 216 0 0 0 chr12 54991455 54991479 -66266051 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1004 1921 199 69 5 chr12 54994783 54995176 -66262354 + MTD LTR MaLR 2 419 0 5 1004 206 341 173 31 chr12 54995621 54995881 -66261649 + L2 LINE L2 2591 2887 -532 5 1004 221 277 0 0 chr12 54996735 54996782 -66260748 + ID4 SINE ID 6 52 -31 5 1004 262 300 0 0 chr12 54997682 54997772 -66259758 + GA-rich Low_complexity Low_complexity 1 90 0 5 1004 451 305 95 33 chr12 54998206 54998447 -66259083 - L2a LINE L2 -1 3425 3170 5 1004 2814 80 50 28 chr12 54998630 54999028 -66258502 - Lx LINE L1 -6 6648 6242 5 1004 1058 131 0 0 chr12 54999028 54999196 -66258334 + L1_Mm LINE L1 4121 4288 -1595 5 1004 6781 40 4 1 chr12 54999196 55000000 -66257530 + L1Md_T LINE L1 5606 6411 -171 5 1004 1170 48 16 77 chr12 55000000 55000182 -66257348 + L1Md_F3 LINE L1 6412 6582 -2 1 1004 5390 125 7 0 chr12 55000175 55000983 -66256547 + L1_Mm LINE L1 4271 5084 -799 2 1004 513 0 0 0 chr12 55002015 55002072 -66255458 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1004 833 186 16 0 chr12 55002087 55002216 -66255314 - B1_Mus2 SINE Alu -15 132 2 4 1004 14886 20 0 0 chr12 55003635 55005330 -66252200 - L1_Mm LINE L1 -609 5274 3580 5 1004 216 67 0 0 chr12 55007721 55007751 -66249779 + (GGA)n Simple_repeat Simple_repeat 1 30 0 6 1004 644 220 213 0 chr12 55007937 55008087 -66249443 + B3A SINE B2 1 182 -16 7 1004 422 284 48 36 chr12 55009577 55009745 -66247785 + MER5A DNA MER1_type 1 170 -19 8 1004 608 300 76 76 chr12 55011772 55011956 -66245574 - B3A SINE B2 -6 189 6 9 1004 915 127 97 0 chr12 55013289 55013423 -66244107 - B1_Mus1 SINE Alu 0 148 2 1 1004 192 368 15 0 chr12 55019457 55019525 -66238005 + MER5A DNA MER1_type 108 176 -13 8 1004 893 146 128 56 chr12 55020980 55021176 -66236354 + MTD LTR MaLR 1 210 -209 1 1004 656 271 11 16 chr12 55021188 55021379 -66236151 + Lx6 LINE L1 7218 7407 -53 1 1004 29 0 0 0 chr12 55021379 55021408 -66236122 + AT_rich Low_complexity Low_complexity 1 29 0 1 1004 772 200 189 0 chr12 55021409 55021594 -66235936 + MTD LTR MaLR 200 419 0 1 1004 411 197 0 0 chr12 55022879 55022945 -66234585 + ID4 SINE ID 9 74 -9 1 1004 409 176 13 39 chr12 55022945 55022956 -66234574 + ID SINE ID 9 83 -141 1 1004 186 43 0 0 chr12 55023946 55023969 -66233561 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1004 22 35 0 0 chr12 55026116 55026145 -66231385 + AT_rich Low_complexity Low_complexity 1 29 0 1 1004 242 275 43 0 chr12 55029146 55029215 -66228315 - MIRb SINE MIR -63 205 134 1 1004 252 86 0 0 chr12 55029851 55029886 -66227644 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 1 1004 496 311 48 6 chr12 55030618 55030813 -66226717 - MIRb SINE MIR -67 201 3 2 1004 896 207 97 4 chr12 55030870 55031127 -66226403 - L1MA9 LINE L1 -36 6276 5996 2 1004 770 236 217 8 chr12 55031134 55031369 -66226161 + L1MA9 LINE L1 5649 5932 -371 2 1004 496 111 22 0 chr12 55031439 55031529 -66226001 + (TATG)n Simple_repeat Simple_repeat 3 94 0 2 1004 255 103 0 0 chr12 55031561 55031600 -66225930 + (TATG)n Simple_repeat Simple_repeat 4 42 0 2 1004 2939 35 8 17 chr12 55032918 55033270 -66224260 - L1Md_F3 LINE L1 -1 6583 6235 2 1004 4644 38 0 2 chr12 55033270 55033818 -66223712 + L1Md_F3 LINE L1 5688 6234 -350 2 1004 180 0 0 0 chr12 55035905 55035925 -66221605 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1004 22 0 0 0 chr12 55036200 55036222 -66221308 + AT_rich Low_complexity Low_complexity 1 22 0 2 1004 242 362 12 0 chr12 55038025 55038105 -66219425 + MER5A DNA MER1_type 35 115 -74 2 1004 236 263 26 13 chr12 55038494 55038571 -66218959 - MER33 DNA MER1_type -1 323 246 2 1004 272 91 23 0 chr12 55040055 55040099 -66217431 + (TTG)n Simple_repeat Simple_repeat 1 45 0 2 1004 25 51 0 0 chr12 55042074 55042113 -66215417 + AT_rich Low_complexity Low_complexity 1 39 0 2 1004 334 238 73 53 chr12 55042693 55042844 -66214686 - HAL1-2a_MD LINE L1 -512 2512 2359 3 1004 301 117 0 32 chr12 55042845 55042907 -66214623 + (TTG)n Simple_repeat Simple_repeat 1 60 0 3 1004 323 214 73 83 chr12 55042957 55043105 -66214425 + PB1D10 SINE Alu 3 149 0 3 1004 258 347 48 40 chr12 55044816 55044942 -66212588 + B1_Mur3 SINE Alu 6 132 -17 3 1004 540 311 26 26 chr12 55045221 55045376 -66212154 - RSINE1 SINE B4 -8 157 3 3 1004 282 303 98 0 chr12 55045593 55045725 -66211805 - MIRc SINE MIR -121 147 3 3 1004 339 25 0 0 chr12 55045867 55045907 -66211623 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 3 1004 630 60 0 0 chr12 55045908 55045991 -66211539 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1004 282 196 0 0 chr12 55045994 55046050 -66211480 - B2_Mm2 SINE B2 -139 56 1 3 1004 230 136 23 0 chr12 55048746 55048790 -66208740 + T-rich Low_complexity Low_complexity 1 45 0 3 1005 23 0 0 0 chr12 55052081 55052104 -66205426 + AT_rich Low_complexity Low_complexity 1 23 0 4 1005 286 263 29 95 chr12 55054297 55054402 -66203128 + PB1D10 SINE Alu 20 117 0 4 1005 276 174 24 24 chr12 55055002 55055126 -66202404 + (TA)n Simple_repeat Simple_repeat 2 125 0 4 1005 293 169 0 25 chr12 55055235 55055314 -66202216 + (TATG)n Simple_repeat Simple_repeat 2 78 0 4 1005 290 276 116 52 chr12 55055936 55056108 -66201422 - MIRb SINE MIR -26 242 60 4 1005 605 162 344 18 chr12 55056755 55056918 -66200612 + B3 SINE B2 1 216 0 4 1005 411 304 102 15 chr12 55057525 55057662 -66199868 + RSINE1 SINE B4 4 152 -13 4 1005 311 179 15 0 chr12 55057664 55057731 -66199799 + GA-rich Low_complexity Low_complexity 1 68 0 4 1005 307 206 116 23 chr12 55058207 55058336 -66199194 - MLT1A1 LTR MaLR 0 408 268 4 1005 335 284 29 0 chr12 55059215 55059328 -66198202 + MIR SINE MIR 26 148 -120 4 1005 800 218 128 0 chr12 55059859 55060038 -66197492 - B3 SINE B2 -12 204 3 5 1005 839 171 0 20 chr12 55060627 55060776 -66196754 - LFSINE_Vert SINE SINE -313 146 1 5 1005 22 0 0 0 chr12 55062979 55063001 -66194529 + AT_rich Low_complexity Low_complexity 1 22 0 5 1005 22 35 0 0 chr12 55065245 55065274 -66192256 + AT_rich Low_complexity Low_complexity 1 29 0 5 1005 209 319 150 0 chr12 55066306 55066419 -66191111 + MIRc SINE MIR 93 222 -46 5 1005 189 0 0 0 chr12 55066419 55066440 -66191090 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1005 949 248 34 38 chr12 55067712 55067947 -66189583 + Lx8 LINE L1 7118 7351 -122 5 1005 191 36 0 35 chr12 55067986 55068015 -66189515 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1005 207 0 0 0 chr12 55069137 55069160 -66188370 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1005 24 0 0 0 chr12 55070362 55070386 -66187144 + AT_rich Low_complexity Low_complexity 1 24 0 5 1005 404 174 0 11 chr12 55072835 55072928 -66184602 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 1005 303 27 0 0 chr12 55072930 55072967 -66184563 - HAL1-3A_ME LINE L1 -846 2012 1976 6 1005 396 261 159 9 chr12 55073511 55073731 -66183799 - MIR SINE MIR -1 261 9 6 1005 305 309 131 0 chr12 55073741 55073884 -66183646 + MIRb SINE MIR 51 219 -49 6 1005 230 261 0 0 chr12 55074115 55074161 -66183369 + ID4 SINE ID 25 70 -13 6 1005 378 0 0 0 chr12 55074171 55074213 -66183317 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1005 392 0 0 20 chr12 55074213 55074261 -66183269 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1005 23 0 0 0 chr12 55076335 55076358 -66181172 + AT_rich Low_complexity Low_complexity 1 23 0 6 1005 205 344 92 18 chr12 55076400 55076628 -66180902 - MIR SINE MIR -6 256 12 6 1005 453 297 27 11 chr12 55079364 55079551 -66177979 + L1M2 LINE L1 5307 5496 -801 6 1005 593 289 5 32 chr12 55079568 55079736 -66177794 + B3A SINE B2 2 165 -33 7 1005 414 0 0 0 chr12 55079736 55079782 -66177748 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1005 593 289 5 32 chr12 55079782 55079799 -66177731 + B3A SINE B2 166 182 -16 7 1005 358 304 9 0 chr12 55079804 55079916 -66177614 + (CA)n Simple_repeat Simple_repeat 2 114 0 7 1005 316 277 86 71 chr12 55079936 55080076 -66177454 + L1M2 LINE L1 5476 5617 -680 6 1005 1133 175 70 0 chr12 55081109 55081309 -66176221 + B3 SINE B2 2 215 -1 7 1005 1182 75 0 0 chr12 55081325 55081472 -66176058 + B1_Mus1 SINE Alu 1 147 -1 7 1005 198 91 0 0 chr12 55081473 55081506 -66176024 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1005 29 28 0 0 chr12 55081870 55081906 -66175624 + AT_rich Low_complexity Low_complexity 1 36 0 7 1005 207 0 0 0 chr12 55085472 55085495 -66172035 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 1005 282 313 71 12 chr12 55085989 55086157 -66171373 - L1MB3 LINE L1 -9 6174 5997 7 1005 351 157 22 11 chr12 55086707 55086797 -66170733 + GA-rich Low_complexity Low_complexity 1 91 0 7 1005 237 277 23 35 chr12 55087258 55087344 -66170186 + MIRb SINE MIR 136 220 -48 8 1005 202 219 0 24 chr12 55087772 55087814 -66169716 + CT-rich Low_complexity Low_complexity 4 44 0 8 1005 1047 240 71 39 chr12 55088598 55088880 -66168650 - B4A SINE B4 0 292 2 8 1005 35 41 0 0 chr12 55089417 55089466 -66168064 + AT_rich Low_complexity Low_complexity 1 49 0 8 1005 22 0 0 0 chr12 55090315 55090337 -66167193 + AT_rich Low_complexity Low_complexity 1 22 0 8 1005 528 16 0 0 chr12 55090596 55090657 -66166873 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1005 357 149 65 9 chr12 55092493 55092601 -66164929 + GA-rich Low_complexity Low_complexity 5 118 0 8 1005 229 189 12 98 chr12 55092927 55093009 -66164521 + MER53 DNA hAT 119 193 0 8 1005 207 0 0 0 chr12 55093150 55093173 -66164357 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1005 542 231 121 21 chr12 55093268 55093458 -66164072 + B3 SINE B2 1 209 -7 8 1005 243 0 0 0 chr12 55093470 55093497 -66164033 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1005 302 262 52 29 chr12 55093854 55094027 -66163503 + L1M5 LINE L1 5254 5430 -694 9 1005 1434 75 16 0 chr12 55094259 55094445 -66163085 + B2_Mm2 SINE B2 3 191 -4 9 1005 243 304 0 80 chr12 55094737 55094812 -66162718 - PB1D7 SINE Alu -1 119 51 9 1005 699 10 51 0 chr12 55095393 55095491 -66162039 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 9 1005 210 87 65 0 chr12 55097090 55097136 -66160394 + CT-rich Low_complexity Low_complexity 2 50 0 9 1005 1072 99 123 0 chr12 55097943 55098114 -66159416 + B2_Mm2 SINE B2 2 193 -2 9 1005 444 260 16 31 chr12 55098612 55098739 -66158791 - MLT1F1 LTR MaLR -423 146 22 9 1005 513 177 0 0 chr12 55098899 55099012 -66158518 + (TA)n Simple_repeat Simple_repeat 1 113 0 9 1005 24 0 0 0 chr12 55100177 55100201 -66157329 + AT_rich Low_complexity Low_complexity 1 24 0 9 1005 590 234 40 47 chr12 55100250 55100398 -66157132 + B3A SINE B2 1 147 -51 1 1005 396 59 0 0 chr12 55100408 55100459 -66157071 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1005 1209 104 0 4 chr12 55102684 55102932 -66154598 + (TTC)n Simple_repeat Simple_repeat 1 246 0 1 1005 200 35 35 0 chr12 55102936 55102965 -66154565 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1005 570 193 58 15 chr12 55102968 55103105 -66154425 - B1_Mur1 SINE Alu -6 143 1 1 1005 277 202 80 45 chr12 55103026 55103114 -66154416 - MT2B LTR ERVL -362 239 149 1 1005 243 0 0 0 chr12 55103132 55103159 -66154371 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1005 693 223 44 39 chr12 55103572 55103754 -66153776 + B3A SINE B2 1 183 -15 1 1005 537 277 16 52 chr12 55104952 55105146 -66152384 + B4A SINE B4 106 292 0 1 1005 198 0 0 0 chr12 55106970 55106992 -66150538 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 1005 1058 189 61 0 chr12 55109201 55109413 -66148117 - URR1A DNA MER1_type 0 226 2 1 1005 695 131 161 16 chr12 55110056 55110180 -66147350 + B1_Mur4 SINE Alu 2 143 -7 1 1005 200 205 0 0 chr12 55110186 55110225 -66147305 + GA-rich Low_complexity Low_complexity 1 39 0 1 1005 265 254 0 0 chr12 55110245 55110304 -66147226 + RSINE1 SINE B4 3 61 -104 1 1005 1377 176 189 12 chr12 55111641 55111980 -66145550 - MTC LTR MaLR -22 399 1 1 1005 598 245 46 74 chr12 55111996 55112212 -66145318 - MTEa LTR MaLR -163 216 7 1 1005 1326 126 8 75 chr12 55112248 55112489 -66145041 + URR1B DNA MER1_type 1 225 0 1 1005 470 0 57 0 chr12 55112827 55112897 -66144633 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1005 261 0 0 0 chr12 55113467 55113496 -66144034 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1005 730 159 0 8 chr12 55113628 55113761 -66143769 + ORR1A1 LTR MaLR 5 136 -210 1 1005 244 354 65 24 chr12 55114409 55114577 -66142953 + MIRb SINE MIR 18 192 -76 1 1005 180 0 0 0 chr12 55114577 55114597 -66142933 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1005 933 176 0 0 chr12 55115527 55115669 -66141861 - B1_Mur1 SINE Alu -5 144 3 1 1005 702 113 0 0 chr12 55116964 55117070 -66140460 + (TTC)n Simple_repeat Simple_repeat 2 107 0 1 1005 652 167 7 73 chr12 55117071 55117207 -66140323 - B1_Mur3 SINE Alu -21 128 2 1 1005 608 204 28 35 chr12 55117671 55117813 -66139717 - B1_Mur4 SINE Alu 0 150 10 1 1005 277 229 9 103 chr12 55117717 55117824 -66139706 - MT2B LTR ERVL -344 257 161 1 1005 206 257 12 86 chr12 55119017 55119098 -66138432 - L2b LINE L2 -22 3353 3279 1 1005 1383 75 17 0 chr12 55119865 55120038 -66137492 + B2_Mm2 SINE B2 1 176 -19 1 1005 205 88 29 0 chr12 55120433 55120467 -66137063 + (TTTTTG)n Simple_repeat Simple_repeat 5 39 0 1 1005 398 252 44 18 chr12 55120467 55120580 -66136950 - PB1D10 SINE Alu 0 117 2 1 1005 213 39 0 0 chr12 55121408 55121434 -66136096 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1005 972 214 19 29 chr12 55121443 55121650 -66135880 - B3 SINE B2 -11 205 1 1 1005 188 0 0 69 chr12 55122691 55122720 -66134810 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 1 1005 272 51 0 63 chr12 55122806 55122869 -66134661 + (CAAAA)n Simple_repeat Simple_repeat 1 59 0 1 1005 280 333 30 0 chr12 55125797 55125896 -66131634 + MIRc SINE MIR 105 206 -62 1 1005 325 303 48 62 chr12 55126524 55126817 -66130713 - L1_Rod LINE L1 -4309 1538 1243 1 1005 291 311 0 0 chr12 55126825 55126928 -66130602 - L1_Rod LINE L1 -6304 868 766 1 1005 945 281 71 61 chr12 55126929 55127320 -66130210 + MTE2a LTR MaLR 1 394 -25 1 1005 1962 280 179 62 chr12 55127498 55128746 -66128784 + MTE2b-int LTR MaLR 186 1579 -1 1 1005 567 249 56 80 chr12 55128747 55129033 -66128497 + MTE2b LTR MaLR 1 257 -122 1 1005 207 0 0 0 chr12 55131513 55131536 -66125994 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 1 1005 837 0 0 0 chr12 55132368 55132461 -66125069 + (GGCTG)n Simple_repeat Simple_repeat 4 96 0 1 1005 22 35 0 0 chr12 55135633 55135662 -66121868 + AT_rich Low_complexity Low_complexity 1 29 0 1 1005 182 326 57 23 chr12 55136250 55136338 -66121192 + MER5A DNA MER1_type 98 188 -1 1 1005 1092 128 12 0 chr12 55138558 55138730 -66118800 + B2_Mm2 SINE B2 1 174 -21 1 1005 1052 212 20 0 chr12 55139256 55139454 -66118076 - B3 SINE B2 -10 206 5 1 1005 360 263 156 12 chr12 55139663 55139836 -66117694 - MER44A DNA MER2_type -40 299 102 1 1005 853 274 79 50 chr12 55140339 55140582 -66116948 + B4A SINE B4 8 258 -34 1 1005 2643 141 6 69 chr12 55140582 55140655 -66116875 + RMER4A LTR ERVK 3 64 -402 1 1005 1118 83 143 0 chr12 55140655 55140802 -66116728 + B2_Mm1a SINE B2 2 160 -33 1 1005 198 0 0 0 chr12 55140802 55140824 -66116706 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1 1005 1118 83 143 0 chr12 55140824 55140844 -66116686 + B2_Mm1a SINE B2 161 192 -1 1 1005 2643 141 6 69 chr12 55140844 55141265 -66116265 + RMER4A LTR ERVK 65 466 0 1 1005 853 274 79 50 chr12 55141265 55141298 -66116232 + B4A SINE B4 259 292 0 1 1005 303 93 0 0 chr12 55141318 55141361 -66116169 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1005 670 251 56 14 chr12 55142030 55142244 -66115286 + MER2 DNA MER2_type 33 255 -90 1 1005 279 341 24 0 chr12 55142261 55142343 -66115187 + PB1D10 SINE Alu 2 85 -32 1 1005 204 191 106 0 chr12 55142521 55142568 -66114962 - MIRc SINE MIR -195 73 22 1 1005 1048 77 0 13 chr12 55142594 55142752 -66114778 + (GA)n Simple_repeat Simple_repeat 1 156 0 1 1005 289 322 0 11 chr12 55143425 55143519 -66114011 - MIRb SINE MIR -97 171 79 1 1005 213 121 0 0 chr12 55144607 55144640 -66112890 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1005 207 0 0 0 chr12 55145953 55145976 -66111554 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1005 198 0 0 0 chr12 55146243 55146265 -66111265 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1005 281 176 0 32 chr12 55147449 55147543 -66109987 + T-rich Low_complexity Low_complexity 1 91 0 1 1005 1043 79 0 0 chr12 55147548 55147688 -66109842 - B1_Mus1 SINE Alu -5 143 4 1 1005 445 178 188 0 chr12 55148636 55148737 -66108793 - PB1D9 SINE Alu 0 120 1 1 1005 243 0 0 0 chr12 55150251 55150278 -66107252 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1005 21 36 0 0 chr12 55151255 55151283 -66106247 + AT_rich Low_complexity Low_complexity 1 28 0 1 1005 297 0 0 0 chr12 55152174 55152207 -66105323 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1005 450 0 0 0 chr12 55152207 55152256 -66105274 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1005 252 300 38 0 chr12 55153045 55153125 -66104405 + PB1D7 SINE Alu 1 83 -37 1 1005 428 230 201 44 chr12 55155068 55155088 -66102442 + B3A SINE B2 5 24 -174 1 1005 288 0 0 0 chr12 55155088 55155120 -66102410 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1005 428 230 201 44 chr12 55155120 55155258 -66102272 + B3A SINE B2 25 187 -11 1 1005 790 188 109 45 chr12 55156891 55157092 -66100438 + B3 SINE B2 2 215 -1 1 1005 288 0 0 0 chr12 55158108 55158140 -66099390 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1005 498 61 0 0 chr12 55159609 55159675 -66097855 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1005 207 0 0 0 chr12 55164311 55164334 -66093196 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1005 973 70 78 0 chr12 55164334 55164463 -66093067 - B1_Mur4 SINE Alu -9 141 3 1 1005 801 89 0 0 chr12 55164467 55164579 -66092951 - B2_Mm2 SINE B2 -80 115 4 1 1005 396 0 0 0 chr12 55164579 55164623 -66092907 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1005 1131 26 19 25 chr12 55167042 55167201 -66090329 + (TATATG)n Simple_repeat Simple_repeat 2 159 0 1 1005 206 118 0 0 chr12 55170491 55170525 -66087005 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1005 264 122 0 0 chr12 55171345 55171386 -66086144 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1005 205 339 0 0 chr12 55171812 55171874 -66085656 + C-rich Low_complexity Low_complexity 5 66 0 1 1005 231 114 0 0 chr12 55171905 55171940 -66085590 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1005 187 286 53 42 chr12 55175785 55175880 -66081650 - L2 LINE L2 -2598 821 726 1 1005 206 327 115 18 chr12 55175875 55176040 -66081490 - L3 LINE CR1 -258 4231 4051 1 1005 385 284 207 63 chr12 55176073 55176295 -66081235 - MLT1C LTR MaLR 0 467 214 1 1005 647 189 0 0 chr12 55179127 55179238 -66078292 + PB1D10 SINE Alu 1 111 -6 1 1005 496 261 165 65 chr12 55179528 55179567 -66077963 + MTE2a LTR MaLR 71 104 -275 1 1005 2130 137 154 0 chr12 55179567 55179931 -66077599 - MTC LTR MaLR 0 421 2 1 1005 496 261 165 65 chr12 55179931 55180170 -66077360 + MTE2a LTR MaLR 105 377 -2 1 1005 369 0 0 0 chr12 55180172 55180213 -66077317 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 125 504 252 58 52 chr12 55181186 55181341 -66076189 - MIRb SINE MIR -77 191 36 1 1006 209 299 171 109 chr12 55181653 55181771 -66075759 - L2b LINE L2 -13 3374 3233 1 1006 393 262 27 36 chr12 55181771 55181882 -66075648 + PB1D10 SINE Alu 1 110 -7 1 1006 183 299 171 109 chr12 55181882 55182138 -66075392 - L2b LINE L2 -137 3250 2977 1 1006 1630 152 188 3 chr12 55182428 55182752 -66074778 + ORR1C2 LTR MaLR 1 384 0 1 1006 229 330 47 85 chr12 55182833 55182875 -66074655 + B4A SINE B4 52 88 -204 1 1006 393 240 20 50 chr12 55182875 55182976 -66074554 + PB1D7 SINE Alu 3 100 -20 1 1006 322 239 0 14 chr12 55183306 55183378 -66074152 + HAL1-3A_ME LINE L1 1958 2028 -830 1 1006 693 217 0 5 chr12 55183391 55183813 -66073717 + (CA)n Simple_repeat Simple_repeat 1 419 0 1 1006 261 0 0 0 chr12 55184436 55184465 -66073065 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1006 1312 207 141 6 chr12 55184594 55184920 -66072610 + ORR1D2 LTR MaLR 1 370 0 1 1006 501 330 144 20 chr12 55184967 55185168 -66072362 + B4 SINE B4 2 227 -65 1 1006 383 140 0 0 chr12 55185376 55185433 -66072097 + B1_Mus1 SINE Alu 13 69 -79 2 1006 918 271 88 0 chr12 55185434 55185685 -66071845 + B4A SINE B4 2 274 -18 2 1006 189 94 0 0 chr12 55185693 55185725 -66071805 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1006 279 79 0 0 chr12 55185736 55185774 -66071756 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1006 1223 41 0 13 chr12 55185780 55185929 -66071601 - B1_Mm SINE Alu 0 147 1 2 1006 1173 121 35 0 chr12 55186065 55186239 -66071291 + B2_Mm1t SINE B2 10 189 -4 2 1006 212 250 0 0 chr12 55186539 55186579 -66070951 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1006 468 0 0 0 chr12 55186698 55186750 -66070780 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1006 289 295 0 33 chr12 55186750 55186841 -66070689 + MIR3 SINE MIR 86 173 -35 2 1006 378 331 56 8 chr12 55188160 55188285 -66069245 - MamRep605 Unknown Unknown -253 623 493 2 1006 288 0 0 0 chr12 55188520 55188552 -66068978 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1006 207 0 0 0 chr12 55188968 55188991 -66068539 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1006 1169 44 0 0 chr12 55188991 55189128 -66068402 - B1_Mm SINE Alu -8 139 3 2 1006 247 78 30 45 chr12 55189799 55189866 -66067664 + GA-rich Low_complexity Low_complexity 2 67 0 2 1006 428 188 9 73 chr12 55189868 55189977 -66067553 + MLT1A1 LTR MaLR 307 408 0 2 1006 630 295 72 81 chr12 55190104 55190439 -66067091 + MTEa LTR MaLR 43 374 -5 2 1006 1977 203 48 23 chr12 55190549 55190863 -66066667 + MTD LTR MaLR 12 336 -83 2 1006 1136 56 28 7 chr12 55190863 55191007 -66066523 + B1_Mus1 SINE Alu 1 147 -1 2 1006 1977 203 48 23 chr12 55191007 55191090 -66066440 + MTD LTR MaLR 337 419 0 2 1006 363 192 156 23 chr12 55191654 55191782 -66065748 - B1_Mur2 SINE Alu 0 149 5 2 1006 353 275 20 92 chr12 55192078 55192230 -66065300 + HAL1b LINE L1 953 1093 -916 2 1006 25 51 0 0 chr12 55192302 55192341 -66065189 + AT_rich Low_complexity Low_complexity 1 39 0 2 1006 384 310 103 6 chr12 55192610 55192785 -66064745 + HAL1b LINE L1 1629 1820 -189 2 1006 1066 57 0 59 chr12 55192959 55193182 -66064348 + (TG)n Simple_repeat Simple_repeat 1 209 0 2 1006 559 234 16 0 chr12 55194155 55194283 -66063247 + B4 SINE B4 94 223 -69 2 1006 790 237 46 33 chr12 55194301 55194526 -66063004 + B3A SINE B2 1 216 0 2 1006 332 264 0 0 chr12 55194543 55194615 -66062915 + B4 SINE B4 215 286 -6 2 1006 384 40 0 0 chr12 55194626 55194676 -66062854 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1006 285 255 177 49 chr12 55196162 55196345 -66061185 - MLT1E LTR MaLR -334 320 109 2 1006 297 264 23 0 chr12 55196519 55196606 -66060924 - Lx8 LINE L1 -237 7236 7148 2 1006 319 138 21 21 chr12 55197189 55197285 -66060245 + (TCTG)n Simple_repeat Simple_repeat 1 96 0 2 1006 869 193 68 72 chr12 55197589 55197796 -66059734 - B3 SINE B2 -6 210 5 2 1006 440 299 58 0 chr12 55197969 55198123 -66059407 + L1MA9 LINE L1 6072 6234 -78 2 1006 543 211 0 99 chr12 55198492 55198613 -66058917 + PB1D9 SINE Alu 2 110 -10 2 1006 735 254 44 3 chr12 55198772 55198935 -66058595 + B3A SINE B2 3 163 -35 2 1006 258 116 0 0 chr12 55198935 55198978 -66058552 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1006 596 270 21 46 chr12 55198978 55199008 -66058522 + B2_Mm2 SINE B2 162 191 -4 2 1006 430 246 52 9 chr12 55199232 55199347 -66058183 + PB1D9 SINE Alu 1 120 0 2 1006 432 254 55 0 chr12 55200353 55200463 -66057067 + MIRb SINE MIR 31 146 -122 2 1006 1265 180 18 60 chr12 55200896 55201179 -66056351 + ORR1B1 LTR MaLR 14 284 -110 2 1006 702 253 13 20 chr12 55201627 55201780 -66055750 + B3A SINE B2 31 182 -16 2 1006 251 239 27 40 chr12 55201947 55202021 -66055509 - L2c LINE L2 -21 3366 3294 2 1006 641 186 6 0 chr12 55202387 55202509 -66055021 + B1_Mur1 SINE Alu 8 134 -15 2 1006 327 328 36 44 chr12 55202509 55202524 -66055006 + ID_B1 SINE B4 89 224 0 2 1006 215 224 0 20 chr12 55202528 55202578 -66054952 + G-rich Low_complexity Low_complexity 3 51 0 2 1006 185 0 40 0 chr12 55203213 55203238 -66054292 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2 1006 270 0 0 0 chr12 55203477 55203507 -66054023 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1006 419 113 14 0 chr12 55203892 55203963 -66053567 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1006 736 189 207 0 chr12 55204759 55204923 -66052607 - MTC LTR MaLR 0 421 224 2 1006 427 131 0 0 chr12 55204911 55204972 -66052558 - MTC LTR MaLR -13 408 348 2 1006 2415 225 79 47 chr12 55204970 55205448 -66052082 + RMER20B LTR ERVK 13 483 -144 2 1006 279 0 0 0 chr12 55205448 55205479 -66052051 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1006 2415 225 79 47 chr12 55205479 55205596 -66051934 + RMER20B LTR ERVK 484 626 -1 2 1006 1472 158 226 0 chr12 55205596 55205806 -66051724 - MTC LTR MaLR -63 358 106 2 1006 795 102 17 17 chr12 55205806 55205926 -66051604 + PB1D9 SINE Alu 1 120 0 2 1006 315 0 0 0 chr12 55205928 55205963 -66051567 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1006 1472 158 226 0 chr12 55205963 55206040 -66051490 - MTC LTR MaLR -316 105 6 2 1006 386 193 168 2 chr12 55206238 55206339 -66051191 + B1_Mur3 SINE Alu 1 120 0 2 1006 3474 15 2 39 chr12 55207656 55208067 -66049463 - MTA_Mm LTR MaLR 0 396 1 2 1006 492 32 0 0 chr12 55208764 55208826 -66048704 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1006 967 252 33 33 chr12 55208941 55209216 -66048314 + B4 SINE B4 1 275 -17 2 1006 1319 64 46 6 chr12 55209305 55209478 -66048052 + B2_Mm2 SINE B2 3 182 -13 2 1006 297 122 19 21 chr12 55209509 55209568 -66047962 + B2_Mm2 SINE B2 47 109 -107 2 1006 297 0 0 0 chr12 55209582 55209615 -66047915 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2 1006 199 253 38 51 chr12 55209627 55209706 -66047824 - MIR SINE MIR -25 237 160 2 1006 252 0 0 0 chr12 55209929 55209957 -66047573 + (TTAG)n Simple_repeat Simple_repeat 4 31 0 2 1006 626 276 40 2 chr12 55210386 55210566 -66046964 + B3A SINE B2 23 211 -5 2 1006 241 338 0 0 chr12 55210572 55210646 -66046884 + B4A SINE B4 77 150 -142 2 1006 348 222 24 0 chr12 55210586 55210668 -66046862 + B1_Mur3 SINE Alu 6 96 -51 2 1006 246 32 0 0 chr12 55212836 55212867 -66044663 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2 1006 556 235 170 19 chr12 55212973 55213151 -66044379 + B3A SINE B2 1 185 -10 2 1006 234 312 16 0 chr12 55213151 55213215 -66044315 + MLT2B2 LTR ERVL 46 110 -405 2 1006 1033 271 55 71 chr12 55213164 55213490 -66044040 + MTEa LTR MaLR 50 370 -9 2 1006 386 212 0 12 chr12 55213704 55213790 -66043740 - MLT1E1A LTR MaLR -2 678 594 2 1006 2610 120 39 23 chr12 55213892 55214096 -66043434 + RMER16 LTR ERVK 1 281 -252 2 1006 4097 64 60 11 chr12 55214096 55214630 -66042900 + LTRIS2 LTR ERV1 5 564 0 2 1006 2610 119 43 19 chr12 55214630 55214872 -66042658 + RMER16 LTR ERVK 282 533 0 2 1006 790 274 31 31 chr12 55214880 55215102 -66042428 - B4A SINE B4 -66 226 5 2 1006 278 271 54 0 chr12 55215125 55215203 -66042327 - MLT1E1A LTR MaLR -126 528 454 2 1006 317 266 101 79 chr12 55216188 55216327 -66041203 + MTEb LTR MaLR 223 364 -15 2 1006 481 302 8 8 chr12 55216627 55216747 -66040783 + PB1 SINE Alu 1 120 -7 2 1006 502 207 146 16 chr12 55217266 55217389 -66040141 + B4A SINE B4 2 140 -152 2 1006 188 325 141 16 chr12 55217605 55217733 -66039797 - L2 LINE L2 -1379 2040 1897 2 1006 213 364 34 0 chr12 55217818 55217906 -66039624 - MIRc SINE MIR -138 130 40 2 1006 720 254 70 11 chr12 55219793 55219980 -66037550 + B3A SINE B2 1 198 0 2 1006 342 0 0 0 chr12 55220079 55220117 -66037413 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1006 2097 184 42 10 chr12 55220760 55221165 -66036365 + MTD LTR MaLR 2 419 0 2 1006 875 187 40 12 chr12 55221497 55221670 -66035860 + ORR1D1 LTR MaLR 3 180 -194 2 1006 573 134 0 0 chr12 55221671 55221783 -66035747 + (TC)n Simple_repeat Simple_repeat 1 112 0 2 1006 849 200 78 10 chr12 55221783 55221975 -66035555 + ORR1D1 LTR MaLR 166 370 0 2 1006 654 263 44 14 chr12 55222147 55222335 -66035195 + B3 SINE B2 18 211 -5 2 1006 192 211 0 0 chr12 55222942 55222980 -66034550 - MIR SINE MIR -82 126 89 2 1006 524 303 43 74 chr12 55223444 55223768 -66033762 - MamGypLTR1a LTR Gypsy -465 319 6 2 1006 245 370 38 83 chr12 55224011 55224276 -66033254 + LTR82A LTR ERVL 5 257 -615 2 1006 2700 142 14 7 chr12 55224473 55224891 -66032639 - MTC LTR MaLR 0 421 1 2 1006 409 244 0 0 chr12 55225204 55225290 -66032240 + B3 SINE B2 47 132 -84 2 1006 384 22 0 0 chr12 55225315 55225360 -66032170 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1006 261 0 0 0 chr12 55225360 55225388 -66032142 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1006 613 296 114 7 chr12 55225418 55225717 -66031813 - MLT1A0 LTR MaLR -2 363 33 2 1006 276 277 86 35 chr12 55226218 55226334 -66031196 + B4A SINE B4 2 123 -169 2 1006 265 303 13 13 chr12 55226416 55226493 -66031037 + RSINE1 SINE B4 79 155 -10 2 1006 510 269 84 73 chr12 55226607 55227045 -66030485 + HAL1 LINE L1 803 1245 -1262 2 1006 235 368 52 75 chr12 55227168 55227474 -66030056 + HAL1 LINE L1 1436 1734 -773 2 1006 876 230 38 24 chr12 55227766 55227781 -66029749 + B3 SINE B2 2 15 -201 2 1006 3031 47 208 9 chr12 55227781 55228208 -66029322 - RLTR1B LTR ERV1 0 512 1 2 1006 876 230 38 24 chr12 55228208 55228401 -66029129 + B3 SINE B2 16 213 -3 2 1006 821 202 197 0 chr12 55228636 55228814 -66028716 + B3 SINE B2 2 214 -2 2 1006 3052 63 47 0 chr12 55229368 55229750 -66027780 - MTB LTR MaLR 0 400 1 2 1006 576 231 90 0 chr12 55230367 55230501 -66027029 - B1_Mur1 SINE Alu -2 147 2 2 1006 1098 159 119 5 chr12 55230880 55231082 -66026448 + URR1A DNA MER1_type 2 226 0 2 1006 339 271 125 0 chr12 55231192 55231288 -66026242 + PB1D10 SINE Alu 10 117 0 2 1006 195 42 0 0 chr12 55231344 55231368 -66026162 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 2 1006 999 264 146 0 chr12 55231579 55231908 -66025622 + MTEb LTR MaLR 3 379 0 3 1006 213 81 54 0 chr12 55232220 55232257 -66025273 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1006 228 246 77 0 chr12 55232339 55232404 -66025126 + L1M4 LINE L1 1039 1108 -5538 3 1006 314 264 100 15 chr12 55232919 55233119 -66024411 + L1M4 LINE L1 1260 1476 -5066 3 1006 824 267 82 34 chr12 55233407 55233698 -66023832 - Lx8 LINE L1 0 7473 7169 3 1006 215 200 0 20 chr12 55233812 55233863 -66023667 + B4 SINE B4 2 51 -241 3 1006 812 169 125 0 chr12 55233859 55234019 -66023511 + RLTR24 LTR ERV1 350 529 0 3 1006 454 295 36 0 chr12 55234103 55234242 -66023288 - B1F1 SINE Alu 0 149 6 3 1006 517 245 25 73 chr12 55234263 55234614 -66022916 + L1M4 LINE L1 5599 5940 -917 3 1006 319 328 96 0 chr12 55234614 55234739 -66022791 + B1F2 SINE Alu 3 139 -10 3 1006 386 278 4 102 chr12 55234739 55234800 -66022730 + L1M4 LINE L1 5941 5993 -864 3 1006 303 189 108 0 chr12 55234804 55234878 -66022652 + HAL1-2a_MD LINE L1 2366 2447 -577 3 1006 205 171 0 0 chr12 55235416 55235451 -66022079 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1006 1232 253 35 57 chr12 55235457 55235948 -66021582 + L1MB2 LINE L1 5453 5932 -239 3 1006 987 124 11 31 chr12 55235950 55236126 -66021404 + RMER16-int LTR ERVK 3633 3795 -1611 3 1006 1714 84 0 0 chr12 55236126 55236340 -66021190 + LSU-rRNA_Hsa rRNA rRNA 1474 1687 -3348 3 1006 404 106 15 0 chr12 55236375 55236441 -66021089 + LSU-rRNA_Hsa rRNA rRNA 1402 1468 -3567 3 1006 641 112 0 0 chr12 55236444 55236533 -66020997 + 4.5SRNA scRNA scRNA 2 90 -4 3 1006 665 103 42 8 chr12 55236533 55236651 -66020879 + RLTR13D3 LTR ERVK 993 1114 0 3 1006 499 222 72 78 chr12 55236651 55236766 -66020764 + L1MB2 LINE L1 5925 6041 -130 3 1006 695 254 92 108 chr12 55236766 55237145 -66020385 - MTEb LTR MaLR -3 376 4 3 1006 499 222 72 78 chr12 55237145 55237195 -66020335 + L1MB2 LINE L1 6042 6089 -82 3 1006 6314 72 21 7 chr12 55237400 55238951 -66018579 + L1VL2 LINE L1 274 1845 -1770 3 1006 297 281 0 0 chr12 55239078 55239167 -66018363 - PB1D10 SINE Alu -2 115 27 3 1006 194 0 0 37 chr12 55239814 55239841 -66017689 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1006 217 154 0 25 chr12 55239936 55239976 -66017554 + A-rich Low_complexity Low_complexity 1 39 0 3 1006 398 362 46 34 chr12 55240832 55241181 -66016349 + HERV16-int LTR ERVL 958 1310 -3686 3 1006 642 266 53 16 chr12 55241419 55241606 -66015924 - B3A SINE B2 -4 194 1 3 1006 791 190 28 0 chr12 55241911 55242053 -66015477 - B1_Mus2 SINE Alu 0 147 2 3 1006 227 314 95 40 chr12 55242377 55242503 -66015027 + ORR1E LTR MaLR 2 134 -225 3 1006 288 315 9 26 chr12 55242677 55242791 -66014739 + MLT1A1 LTR MaLR 295 406 -2 3 1006 459 0 0 0 chr12 55243739 55243790 -66013740 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1006 457 262 101 47 chr12 55243840 55243988 -66013542 + RSINE1 SINE B4 3 158 -7 3 1006 681 73 0 0 chr12 55243992 55244088 -66013442 + (CA)n Simple_repeat Simple_repeat 2 97 0 3 1006 1224 48 7 0 chr12 55244428 55244574 -66012956 + B1_Mus2 SINE Alu 1 147 0 3 1006 748 247 126 7 chr12 55244902 55245187 -66012343 + L1MA7 LINE L1 5949 6267 -24 3 1006 189 0 0 0 chr12 55246300 55246321 -66011209 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 3 1006 892 216 40 5 chr12 55246327 55246527 -66011003 + B3 SINE B2 1 207 -9 3 1006 1200 130 11 0 chr12 55246569 55246746 -66010784 + B2_Mm1t SINE B2 1 179 -14 3 1006 290 150 313 26 chr12 55246811 55246926 -66010604 + B2_Mm2 SINE B2 47 194 -1 3 1006 223 140 20 20 chr12 55246929 55246964 -66010566 + polypurine Low_complexity Low_complexity 4 38 0 3 1006 1161 118 0 0 chr12 55246964 55247142 -66010388 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1006 223 140 20 20 chr12 55247142 55247157 -66010373 + polypurine Low_complexity Low_complexity 39 54 0 3 1006 780 11 0 0 chr12 55247157 55247246 -66010284 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 3 1006 392 292 10 0 chr12 55247246 55247342 -66010188 + B4 SINE B4 86 182 -110 3 1006 2328 127 53 5 chr12 55247381 55247761 -66009769 - RMER10B LTR ERVL 0 398 1 3 1006 504 0 0 0 chr12 55247768 55247824 -66009706 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1006 844 171 144 0 chr12 55248680 55248861 -66008669 + B3 SINE B2 5 211 -5 3 1006 1193 62 0 0 chr12 55248872 55249016 -66008514 + B1_Mus1 SINE Alu 2 145 -3 3 1006 502 315 24 18 chr12 55250135 55250303 -66007227 - Lx8 LINE L1 -120 7353 7185 3 1006 435 63 0 0 chr12 55250544 55250607 -66006923 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1006 1249 114 6 11 chr12 55250680 55250857 -66006673 + B2_Mm1t SINE B2 4 179 -14 3 1006 440 97 300 58 chr12 55250904 55251024 -66006506 + B2_Mm2 SINE B2 47 195 0 3 1006 606 310 31 49 chr12 55252605 55252893 -66004637 + B4A SINE B4 7 289 -3 3 1006 209 288 0 24 chr12 55252894 55252976 -66004554 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 3 1006 203 226 85 28 chr12 55253008 55253149 -66004381 + (TCTA)n Simple_repeat Simple_repeat 4 152 0 3 1006 456 237 11 17 chr12 55253097 55253334 -66004196 + (TA)n Simple_repeat Simple_repeat 1 235 0 3 1006 269 252 175 18 chr12 55255092 55255308 -66002222 + L1MC4a LINE L1 6345 6595 -1447 3 1006 267 283 65 24 chr12 55255360 55255483 -66002047 - RMER15 LTR ERVL -16 559 432 3 1006 519 292 95 34 chr12 55255829 55256091 -66001439 + B4A SINE B4 1 278 -14 3 1006 22 0 0 0 chr12 55256363 55256385 -66001145 + AT_rich Low_complexity Low_complexity 1 22 0 3 1006 616 52 0 1 chr12 55256385 55256478 -66001052 + B1_Mm SINE Alu 58 149 0 3 1006 1180 273 141 31 chr12 55256618 55257054 -66000476 + L1MA5 LINE L1 4685 5172 -971 3 1006 207 0 0 0 chr12 55257054 55257077 -66000453 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1006 1180 289 104 42 chr12 55257077 55257790 -65999740 + L1MA5 LINE L1 5173 5938 -362 3 1006 1270 99 16 16 chr12 55258184 55258378 -65999152 + B2_Mm2 SINE B2 2 195 0 3 1006 785 137 14 0 chr12 55258379 55258518 -65999012 + GA-rich Low_complexity Low_complexity 4 144 0 3 1006 302 305 156 0 chr12 55258584 55258712 -65998818 - B1F SINE Alu -1 148 1 3 1006 399 310 86 0 chr12 55258597 55258713 -65998817 - ID_B1 SINE B4 -18 206 81 3 1006 334 128 242 11 chr12 55258971 55259066 -65998464 + PB1D10 SINE Alu 1 117 0 3 1006 438 36 0 0 chr12 55259277 55259333 -65998197 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1006 565 276 109 87 chr12 55259340 55259413 -65998117 - B4A SINE B4 0 292 235 3 1006 2131 143 79 8 chr12 55259413 55259779 -65997751 + ORR1B1 LTR MaLR 3 394 0 3 1006 565 276 109 87 chr12 55259779 55259971 -65997559 - B4A SINE B4 -58 234 21 3 1006 450 265 162 0 chr12 55260573 55260709 -65996821 + RSINE1 SINE B4 2 159 -6 3 1006 1400 110 150 14 chr12 55261532 55261663 -65995867 + ORR1A2 LTR MaLR 1 145 -249 3 1006 4455 54 2 55 chr12 55261663 55262353 -65995177 + L1_Mus4 LINE L1 6053 6636 0 3 1006 1400 90 112 5 chr12 55262353 55262481 -65995049 + ORR1A2 LTR MaLR 94 245 -82 3 1006 234 0 0 0 chr12 55262697 55262723 -65994807 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1006 186 208 0 0 chr12 55263357 55263410 -65994120 + G-rich Low_complexity Low_complexity 1 53 0 3 1006 24 0 0 0 chr12 55264205 55264229 -65993301 + AT_rich Low_complexity Low_complexity 1 24 0 3 1006 1099 94 0 12 chr12 55264545 55264718 -65992812 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 1006 711 160 64 0 chr12 55264912 55265037 -65992493 + B1_Mus2 SINE Alu 12 144 -3 3 1006 248 282 114 11 chr12 55265725 55265911 -65991619 + MIRc SINE MIR 15 237 -31 3 1006 270 136 0 0 chr12 55266482 55266526 -65991004 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1006 284 218 0 0 chr12 55268047 55268102 -65989428 - RSINE1 SINE B4 -104 61 7 3 1006 207 170 0 0 chr12 55268162 55268209 -65989321 + CT-rich Low_complexity Low_complexity 3 49 0 3 1006 276 306 118 78 chr12 55268228 55268340 -65989190 - L1MDb LINE L1 -4782 1851 1727 3 1006 195 42 0 0 chr12 55268340 55268364 -65989166 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1006 276 306 118 78 chr12 55268364 55268469 -65989061 - L1MDb LINE L1 -4907 1726 1634 3 1006 410 0 0 20 chr12 55268469 55268520 -65989010 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 1006 575 278 102 97 chr12 55268520 55268811 -65988719 - L1MDb LINE L1 -5000 1633 1324 3 1006 885 255 14 5 chr12 55268811 55269024 -65988506 - B3 SINE B2 0 216 2 3 1006 575 268 96 104 chr12 55269024 55269283 -65988247 - L1MDb LINE L1 -5196 1344 1052 3 1006 396 0 0 0 chr12 55269333 55269377 -65988153 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1006 518 155 103 0 chr12 55270611 55270708 -65986822 + B3 SINE B2 2 108 -108 3 1006 423 0 0 0 chr12 55270708 55270755 -65986775 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1006 294 293 134 30 chr12 55271144 55271271 -65986259 + L1MD LINE L1 4905 5046 -1100 3 1006 306 217 0 42 chr12 55271271 55271343 -65986187 + ID2 SINE ID 2 70 -13 3 1006 444 270 136 32 chr12 55271343 55271920 -65985610 + L1MD LINE L1 5047 5667 -512 3 1006 705 88 0 0 chr12 55272474 55272576 -65984954 + (ATG)n Simple_repeat Simple_repeat 2 103 0 3 1006 488 224 238 0 chr12 55272576 55272723 -65984807 - B3 SINE B2 -29 187 6 3 1006 365 300 121 23 chr12 55272725 55272899 -65984631 - B4A SINE B4 -99 193 3 3 1006 669 131 0 0 chr12 55273127 55273234 -65984296 + (TG)n Simple_repeat Simple_repeat 1 107 0 3 1006 240 244 76 13 chr12 55273294 55273373 -65984157 - L1M5 LINE L1 -663 5510 5427 3 1006 536 53 0 0 chr12 55273584 55273660 -65983870 - B1_Mur4 SINE Alu 0 150 75 3 1006 391 257 20 10 chr12 55273853 55273955 -65983575 - B1_Mur3 SINE Alu -46 103 1 3 1006 2509 154 31 14 chr12 55274963 55275377 -65982153 - MTC LTR MaLR 0 421 1 3 1006 1543 142 93 152 chr12 55276793 55277154 -65980376 - MTC LTR MaLR -6 415 67 3 1006 1300 112 17 0 chr12 55277154 55277332 -65980198 - B2_Mm2 SINE B2 -14 181 1 3 1006 1543 142 93 152 chr12 55277332 55277411 -65980119 - MTC LTR MaLR -355 66 1 3 1006 285 225 214 9 chr12 55277583 55277695 -65979835 - Charlie1 DNA MER1_type -1752 1029 895 3 1006 229 208 21 0 chr12 55277818 55277866 -65979664 + L1M4c LINE L1 1537 1585 -4799 3 1006 2166 124 68 141 chr12 55277878 55278375 -65979155 + RMER1B Other Other 601 1061 -5 4 1006 411 317 91 55 chr12 55278450 55278794 -65978736 - MLT1A0 LTR MaLR -6 402 2 4 1006 228 300 0 0 chr12 55279614 55279664 -65977866 + ID2 SINE ID 6 55 -28 4 1006 800 91 239 64 chr12 55279668 55279856 -65977674 - URR1A DNA MER1_type -1 225 5 4 1006 632 288 4 70 chr12 55279983 55280241 -65977289 - L2a LINE L2 -5 3421 3181 4 1006 231 61 0 0 chr12 55281705 55281738 -65975792 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1006 284 253 13 13 chr12 55281856 55281932 -65975598 - ID4 SINE ID -3 80 5 4 1006 284 232 73 10 chr12 55282072 55282157 -65975373 - B1F1 SINE Alu 0 117 32 4 1006 1087 92 0 0 chr12 55283738 55283880 -65973650 + B1_Mus2 SINE Alu 1 142 -5 4 1006 183 42 0 0 chr12 55283884 55283908 -65973622 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1006 216 0 0 0 chr12 55283939 55283963 -65973567 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 4 1006 210 143 0 0 chr12 55283963 55283998 -65973532 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1006 552 276 179 0 chr12 55284028 55284184 -65973346 + ID_B1 SINE B4 2 185 -39 4 1006 263 283 131 71 chr12 55284105 55284193 -65973337 + PB1D10 SINE Alu 13 107 -10 4 1006 525 32 0 0 chr12 55284193 55284256 -65973274 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 4 1006 242 167 266 13 chr12 55284484 55284563 -65972967 - PB1D7 SINE Alu -8 112 14 4 1006 378 0 0 0 chr12 55286472 55286514 -65971016 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1006 235 272 112 37 chr12 55286986 55287093 -65970437 + PB1D7 SINE Alu 1 115 -5 4 1006 976 211 20 41 chr12 55288142 55288487 -65969043 + MTEb LTR MaLR 1 379 0 4 1006 587 250 19 57 chr12 55290445 55290602 -65966928 - B3A SINE B2 -46 152 2 4 1006 234 98 0 56 chr12 55290614 55290668 -65966862 + GA-rich Low_complexity Low_complexity 1 51 0 4 1006 251 28 28 0 chr12 55290858 55290894 -65966636 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 4 1006 1228 34 7 0 chr12 55290894 55291040 -65966490 - B1_Mus2 SINE Alu 0 147 1 4 1006 416 322 28 7 chr12 55291269 55291413 -65966117 + RSINE1 SINE B4 15 161 -4 4 1006 236 30 30 0 chr12 55291697 55291730 -65965800 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1006 761 264 102 15 chr12 55294234 55294499 -65963031 - MER2 DNA MER2_type -32 313 26 4 1006 479 95 14 0 chr12 55295025 55295099 -65962431 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 4 1006 495 0 0 0 chr12 55295372 55295427 -65962103 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1006 304 306 45 9 chr12 55295554 55295666 -65961864 + PB1D10 SINE Alu 1 116 -1 4 1006 284 250 118 29 chr12 55295877 55296013 -65961517 + B1_Mus1 SINE Alu 1 148 0 4 1006 1013 260 88 12 chr12 55297884 55298215 -65959315 - ORR1E LTR MaLR -2 357 2 4 1006 1174 35 14 0 chr12 55299912 55300056 -65957474 + B1_Mus2 SINE Alu 2 147 0 4 1006 195 42 0 0 chr12 55300056 55300080 -65957450 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1006 198 0 0 0 chr12 55300342 55300364 -65957166 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 4 1006 203 214 125 28 chr12 55301074 55301146 -65956384 + MIRb SINE MIR 190 268 0 4 1006 264 353 24 40 chr12 55301461 55301585 -65955945 - RMER12 LTR ERVK -461 861 740 4 1006 405 0 0 0 chr12 55302148 55302193 -65955337 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1006 282 29 0 0 chr12 55302242 55302277 -65955253 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1006 200 183 0 40 chr12 55305659 55305733 -65951797 + GA-rich Low_complexity Low_complexity 1 71 0 4 1006 436 258 19 102 chr12 55307115 55307164 -65950366 - ORR1E LTR MaLR 0 379 312 4 1006 1883 172 41 23 chr12 55307164 55307551 -65949979 + ORR1B1 LTR MaLR 1 394 0 4 1006 436 300 168 75 chr12 55307551 55307833 -65949697 - ORR1E LTR MaLR -48 311 1 4 1006 1575 52 16 0 chr12 55307878 55308070 -65949460 - B2_Mm2 SINE B2 0 195 1 4 1006 1084 225 76 47 chr12 55308075 55308408 -65949122 - MTE2a LTR MaLR -13 406 52 4 1006 874 236 63 15 chr12 55308408 55308614 -65948916 + B3 SINE B2 1 216 0 4 1006 785 277 79 87 chr12 55308614 55308676 -65948854 - MTE2a LTR MaLR -354 65 18 4 1006 1494 265 92 33 chr12 55308771 55309317 -65948213 - L1MB5 LINE L1 -73 6101 5524 4 1006 550 222 135 0 chr12 55309336 55309462 -65948068 - B1_Mur1 SINE Alu -2 147 5 4 1006 660 196 165 21 chr12 55309472 55309660 -65947870 - B3 SINE B2 0 216 2 4 1006 217 306 23 76 chr12 55309812 55309943 -65947587 - MIR SINE MIR -55 207 84 4 1006 586 284 39 8 chr12 55310836 55311070 -65946460 - L1MC3 LINE L1 0 7785 7545 4 1006 365 309 94 0 chr12 55311398 55311547 -65945983 - MER5A DNA MER1_type 0 189 27 4 1006 325 348 54 33 chr12 55311719 55311960 -65945570 + MLT1L LTR MaLR 364 609 -1 4 1006 452 250 224 0 chr12 55312033 55312149 -65945381 + B1_Mur1 SINE Alu 5 146 -3 4 1006 707 189 29 7 chr12 55312194 55312333 -65945197 - B1_Mur1 SINE Alu -7 142 1 4 1007 264 30 0 0 chr12 55312624 55312657 -65944873 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 1007 274 243 84 67 chr12 55313026 55313145 -65944385 + LTR33A LTR ERVL 24 144 -359 4 1007 362 387 55 28 chr12 55313266 55313521 -65944009 + LTR33A LTR ERVL 256 517 -3 4 1007 859 167 14 6 chr12 55313834 55314012 -65943518 + ORR1A1 LTR MaLR 1 181 -165 4 1007 658 211 333 5 chr12 55314017 55314236 -65943294 + B4A SINE B4 1 291 -1 4 1007 291 85 0 0 chr12 55314280 55314327 -65943203 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1007 389 187 107 0 chr12 55315568 55315643 -65941887 - MER21B LTR ERV1 -283 580 498 4 1007 352 244 13 0 chr12 55315902 55315980 -65941550 - MER21B LTR ERV1 -763 100 22 4 1007 1945 155 15 98 chr12 55315990 55316240 -65941290 - ORR1D1 LTR MaLR 0 374 150 4 1007 800 48 0 9 chr12 55316240 55316346 -65941184 + (TTC)n Simple_repeat Simple_repeat 3 107 0 4 1007 1100 67 0 0 chr12 55316346 55316481 -65941049 - B1_Mus1 SINE Alu -12 136 2 4 1007 1945 155 15 98 chr12 55316481 55316637 -65940893 - ORR1D1 LTR MaLR -225 149 2 4 1007 423 0 0 0 chr12 55317117 55317164 -65940366 + (TAA)n Simple_repeat Simple_repeat 2 48 0 4 1007 372 138 0 0 chr12 55317296 55317361 -65940169 + (TATG)n Simple_repeat Simple_repeat 4 68 0 4 1007 868 140 86 63 chr12 55317468 55317643 -65939887 + B2_Mm2 SINE B2 3 181 -14 4 1007 378 0 0 0 chr12 55318618 55318660 -65938870 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1007 212 358 45 9 chr12 55319633 55319743 -65937787 - MIRb SINE MIR -7 261 148 4 1007 221 268 0 0 chr12 55319743 55319784 -65937746 + B3 SINE B2 2 42 -174 4 1007 230 73 0 24 chr12 55319796 55319838 -65937692 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 4 1007 847 114 53 0 chr12 55319840 55319972 -65937558 - B1_Mus1 SINE Alu 0 148 10 4 1007 323 292 21 10 chr12 55320238 55320335 -65937195 + B4A SINE B4 40 137 -155 4 1007 839 178 80 18 chr12 55320397 55320575 -65936955 - MTD LTR MaLR -37 384 192 4 1007 776 156 66 36 chr12 55320585 55320875 -65936655 - RMER17C LTR ERVK 0 410 19 4 1007 232 86 57 0 chr12 55321045 55321080 -65936450 - RMER17C LTR ERVK -365 45 9 4 1007 23 0 0 0 chr12 55321080 55321103 -65936427 + AT_rich Low_complexity Low_complexity 1 23 0 4 1007 829 176 39 7 chr12 55321113 55321267 -65936263 - MTD LTR MaLR -260 159 1 4 1007 2087 180 143 13 chr12 55321367 55321828 -65935702 + RLTR11A2 LTR ERVK 7 527 0 4 1007 30 0 0 0 chr12 55322027 55322057 -65935473 + AT_rich Low_complexity Low_complexity 1 30 0 4 1007 604 209 95 22 chr12 55322232 55322369 -65935161 - B1_Mur2 SINE Alu -1 148 2 4 1007 209 323 32 0 chr12 55322487 55322580 -65934950 + MIR SINE MIR 55 150 -58 4 1007 298 0 0 0 chr12 55322752 55322786 -65934744 + U2 snRNA snRNA 1 34 -154 4 1007 406 243 45 27 chr12 55322949 55323059 -65934471 + MLT1A1 LTR MaLR 297 408 0 4 1007 314 240 183 15 chr12 55324787 55324918 -65932612 + MER53 DNA hAT 1 153 -40 4 1007 1056 111 0 0 chr12 55325196 55325376 -65932154 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 4 1007 223 316 12 71 chr12 55325468 55325553 -65931977 + PB1D10 SINE Alu 23 102 -15 4 1007 301 75 19 19 chr12 55325924 55325978 -65931552 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1007 417 207 243 0 chr12 55326066 55326177 -65931353 - B1_Mus1 SINE Alu -1 147 10 4 1007 539 323 103 27 chr12 55326177 55326508 -65931022 + Arthur1 DNA Tip100 3530 3885 -62 4 1007 1008 163 75 50 chr12 55327044 55327229 -65930301 - B3 SINE B2 -5 211 18 4 1007 1638 191 94 27 chr12 55327229 55327643 -65929887 + RMER10A LTR ERVL 1 442 0 4 1007 1008 163 75 50 chr12 55327643 55327657 -65929873 - B3 SINE B2 -199 17 7 4 1007 634 258 29 58 chr12 55328713 55328929 -65928601 + B3A SINE B2 1 214 -2 4 1007 387 0 0 0 chr12 55330002 55330045 -65927485 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1007 252 0 0 0 chr12 55330045 55330072 -65927458 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1007 993 255 67 26 chr12 55330099 55330369 -65927161 - B4A SINE B4 -6 286 6 4 1007 8560 196 61 41 chr12 55330470 55332847 -65924683 + Lx7 LINE L1 5000 7445 -251 4 1007 1234 48 7 0 chr12 55332847 55332993 -65924537 - B1_Mus2 SINE Alu 0 147 1 4 1007 8560 207 72 41 chr12 55332993 55333264 -65924266 + Lx7 LINE L1 7446 7696 0 4 1007 311 308 90 51 chr12 55333696 55333874 -65923656 + LTR81A LTR ERV1? 140 324 -1026 4 1007 292 346 92 26 chr12 55333871 55334144 -65923386 + Charlie2a DNA MER1_type 5 295 -2566 4 1007 338 284 29 74 chr12 55334303 55334478 -65923052 + Charlie2a DNA MER1_type 1493 1659 -1202 4 1007 1227 188 126 3 chr12 55334691 55335000 -65922530 + MTD LTR MaLR 50 396 -23 4 1007 414 0 0 0 chr12 55335685 55335731 -65921799 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1007 245 163 0 0 chr12 55335740 55335756 -65921774 - ORR1C2 LTR MaLR -268 110 95 4 1007 5370 200 40 48 chr12 55335756 55336851 -65920679 - ORR1C2-int LTR MaLR -3 1367 292 4 1007 185 0 40 0 chr12 55336851 55336876 -65920654 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1007 5370 200 40 48 chr12 55336876 55337141 -65920389 - ORR1C2-int LTR MaLR -1079 291 19 4 1007 1264 164 93 39 chr12 55337140 55337319 -65920211 - ORR1C2 LTR MaLR -89 295 101 4 1007 180 0 0 0 chr12 55337319 55337339 -65920191 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1007 1120 58 0 0 chr12 55337339 55337476 -65920054 - B1_Mus1 SINE Alu -10 138 2 5 1007 1264 164 93 39 chr12 55337476 55337575 -65919955 - ORR1C2 LTR MaLR -284 100 2 4 1007 307 340 62 34 chr12 55337575 55337721 -65919809 - MTEa LTR MaLR -229 150 1 5 1007 423 275 78 42 chr12 55337801 55337968 -65919562 + MER3 DNA MER1_type 32 204 -5 5 1007 25 65 0 0 chr12 55338180 55338226 -65919304 + AT_rich Low_complexity Low_complexity 1 46 0 5 1007 244 217 0 32 chr12 55338353 55338415 -65919115 - MLT1F2 LTR MaLR -3 545 486 5 1007 583 133 28 9 chr12 55338432 55338538 -65918992 + B2_Mm2 SINE B2 81 188 -7 5 1007 257 128 21 0 chr12 55338538 55338585 -65918945 + (GGA)n Simple_repeat Simple_repeat 1 48 0 5 1007 342 329 44 31 chr12 55338611 55338771 -65918759 - MLT1F2 LTR MaLR -75 485 324 5 1007 447 19 0 0 chr12 55338771 55338823 -65918707 + (CTG)n Simple_repeat Simple_repeat 1 52 0 5 1007 346 269 45 55 chr12 55338829 55338939 -65918591 - PB1D10 SINE Alu -6 111 3 5 1007 2668 64 45 3 chr12 55339043 55339402 -65918128 - L1_Mus1 LINE L1 0 6567 6194 5 1007 572 103 11 0 chr12 55339402 55339489 -65918041 - B1_Mus1 SINE Alu -60 88 1 5 1007 1268 207 94 18 chr12 55339792 55340173 -65917357 - RMER16 LTR ERVK 0 533 1 5 1007 827 51 8 8 chr12 55340227 55340345 -65917185 + U1 snRNA snRNA 4 121 -44 5 1007 266 234 16 0 chr12 55340353 55340417 -65917113 - MER63B DNA AcHobo -45 391 327 5 1007 1963 152 38 83 chr12 55340806 55341202 -65916328 + ORR1C1 LTR MaLR 1 378 0 5 1007 261 247 12 24 chr12 55341480 55341563 -65915967 - PB1D10 SINE Alu -20 97 16 5 1007 501 223 77 0 chr12 55341739 55341869 -65915661 - U1 snRNA snRNA 0 165 26 5 1007 385 200 24 48 chr12 55345054 55345138 -65912392 + ID4 SINE ID 2 83 0 5 1007 450 36 0 0 chr12 55345294 55345350 -65912180 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1007 207 0 0 0 chr12 55345350 55345372 -65912158 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1007 547 203 151 24 chr12 55345373 55345499 -65912031 - B1_Mur2 SINE Alu -7 142 1 5 1007 248 111 178 0 chr12 55345551 55345596 -65911934 - ORR1B2 LTR MaLR 0 367 315 5 1007 333 0 0 0 chr12 55346706 55346743 -65910787 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1007 839 61 0 0 chr12 55347492 55347607 -65909923 - B1_Mus1 SINE Alu -3 145 31 5 1007 655 276 77 0 chr12 55348786 55348982 -65908548 - B3 SINE B2 0 216 6 5 1007 200 265 20 0 chr12 55350196 55350245 -65907285 + GA-rich Low_complexity Low_complexity 1 50 0 5 1007 387 0 0 0 chr12 55350290 55350333 -65907197 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1007 1174 50 0 0 chr12 55350336 55350477 -65907053 - B1_Mus1 SINE Alu -6 142 2 5 1007 849 196 81 52 chr12 55350500 55350710 -65906820 - B3 SINE B2 0 216 1 5 1007 26 30 0 0 chr12 55350713 55350746 -65906784 + AT_rich Low_complexity Low_complexity 1 33 0 5 1007 732 150 16 0 chr12 55351316 55351443 -65906087 - B1_Mur1 SINE Alu 0 149 21 5 1007 374 165 9 142 chr12 55351354 55351467 -65906063 - MT2B LTR ERVL -338 263 166 5 1007 42 77 0 0 chr12 55351556 55351647 -65905883 + AT_rich Low_complexity Low_complexity 1 91 0 5 1007 211 35 0 0 chr12 55351647 55351676 -65905854 - B3A SINE B2 -168 30 2 5 1007 998 260 36 30 chr12 55351952 55352257 -65905273 - Lx8 LINE L1 -317 7156 6850 5 1007 292 260 164 0 chr12 55352263 55352367 -65905163 - PB1 SINE Alu -6 121 1 5 1007 1810 273 43 14 chr12 55352584 55353138 -65904392 + L1MB7 LINE L1 5520 6089 -95 5 1007 245 176 117 50 chr12 55354652 55354712 -65902818 - L1M2 LINE L1 -649 5642 5579 5 1007 836 316 78 16 chr12 55354704 55355203 -65902327 + L1_Mur3 LINE L1 3824 4353 -1527 5 1007 870 259 106 78 chr12 55355206 55355679 -65901851 + MLT1D LTR MaLR 18 503 -2 5 1007 2500 148 0 45 chr12 55355687 55356154 -65901376 + RMER19B LTR ERVK 457 902 0 5 1007 772 194 11 11 chr12 55356186 55356455 -65901075 + (TGGA)n Simple_repeat Simple_repeat 1 269 0 5 1007 259 319 7 22 chr12 55356481 55356605 -65900925 + GA-rich Low_complexity Low_complexity 1 122 0 5 1007 1228 28 7 0 chr12 55356605 55356750 -65900780 + B1_Mm SINE Alu 2 147 0 5 1007 259 319 7 22 chr12 55356750 55356763 -65900767 + polypurine Low_complexity Low_complexity 123 135 0 5 1007 266 50 25 0 chr12 55356796 55356836 -65900694 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1007 655 245 61 101 chr12 55357696 55358041 -65899489 + ORR1E LTR MaLR 8 338 -21 5 1007 854 152 18 24 chr12 55358051 55358220 -65899310 - URR1B DNA MER1_type 0 225 58 5 1007 378 260 104 16 chr12 55358338 55358463 -65899067 + B1F SINE Alu 2 137 -12 5 1007 627 58 0 0 chr12 55358460 55358547 -65898983 + B1_Mm SINE Alu 61 147 0 5 1007 468 91 0 0 chr12 55359442 55359508 -65898022 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1007 1476 201 111 14 chr12 55359714 55360082 -65897448 - MTD LTR MaLR -15 404 1 5 1007 867 140 0 0 chr12 55360347 55360490 -65897040 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 5 1007 588 194 0 0 chr12 55361082 55361206 -65896324 + GA-rich Low_complexity Low_complexity 2 125 0 5 1007 898 284 108 58 chr12 55361361 55361794 -65895736 + MLT1F2 LTR MaLR 77 531 -29 5 1007 277 200 59 59 chr12 55362271 55362372 -65895158 - RLTR12B LTR ERVK -29 499 399 5 1007 527 285 88 62 chr12 55362378 55362662 -65894868 - RLTR12B LTR ERVK -230 297 1 5 1007 198 0 0 0 chr12 55362944 55362966 -65894564 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1007 288 313 47 53 chr12 55363250 55363419 -65894111 - MLT1M LTR MaLR -377 295 128 5 1007 785 200 0 11 chr12 55364296 55364478 -65893052 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1007 258 32 0 0 chr12 55367099 55367130 -65890400 + (TCC)n Simple_repeat Simple_repeat 3 33 0 5 1007 726 12 0 0 chr12 55367131 55367214 -65890316 + (TTTTG)n Simple_repeat Simple_repeat 3 85 0 5 1007 275 286 143 0 chr12 55367215 55367327 -65890203 - ID_B1 SINE B4 -14 210 83 5 1007 634 273 111 0 chr12 55367699 55367871 -65889659 + B3A SINE B2 2 192 -6 5 1007 769 251 278 4 chr12 55368021 55368244 -65889286 + B4 SINE B4 5 288 -4 5 1007 1495 159 57 0 chr12 55370063 55370359 -65887171 - MTC LTR MaLR -1 420 108 5 1007 8094 6 0 0 chr12 55370359 55371268 -65886262 - L1_Mm LINE L1 -1996 3887 2979 5 1007 180 0 0 0 chr12 55371268 55371288 -65886242 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1007 668 185 0 0 chr12 55371289 55371408 -65886122 - MTC LTR MaLR -302 119 1 5 1007 431 259 17 17 chr12 55371548 55371666 -65885864 + RSINE1 SINE B4 17 134 -31 5 1007 219 69 0 0 chr12 55371673 55371702 -65885828 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1007 877 149 48 65 chr12 55371762 55371948 -65885582 + ORR1D1 LTR MaLR 1 183 -191 5 1007 180 0 0 0 chr12 55371948 55371968 -65885562 + (TCTCCC)n Simple_repeat Simple_repeat 2 21 0 5 1007 1111 275 3 62 chr12 55372440 55372746 -65884784 + B4 SINE B4 3 290 -2 5 1007 473 174 32 11 chr12 55372961 55373054 -65884476 - B1F1 SINE Alu -52 97 3 5 1007 504 0 0 0 chr12 55374143 55374199 -65883331 + (TAA)n Simple_repeat Simple_repeat 3 58 0 5 1007 287 217 236 13 chr12 55374210 55374322 -65883208 + B1_Mur1 SINE Alu 7 147 -2 5 1007 474 263 51 0 chr12 55374354 55374472 -65883058 + B1F2 SINE Alu 10 133 -16 5 1007 380 320 23 30 chr12 55374472 55374486 -65883044 + ID_B1 SINE B4 91 221 -3 5 1007 582 86 0 0 chr12 55374490 55374571 -65882959 + (GGGGA)n Simple_repeat Simple_repeat 5 85 0 5 1007 879 139 0 14 chr12 55375203 55375349 -65882181 - B1_Mur2 SINE Alu 0 149 6 5 1007 21 0 0 0 chr12 55375587 55375608 -65881922 + AT_rich Low_complexity Low_complexity 1 21 0 5 1007 216 97 0 0 chr12 55375733 55375764 -65881766 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1007 410 291 48 76 chr12 55375849 55375975 -65881555 + RSINE1 SINE B4 25 152 -13 5 1007 195 114 0 0 chr12 55375975 55376010 -65881520 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 5 1007 3554 164 162 30 chr12 55376012 55376771 -65880759 + RMER13A LTR ERVK 1 859 -1 5 1007 410 291 48 76 chr12 55376771 55376786 -65880744 + RSINE1 SINE B4 153 165 0 5 1007 28 71 0 0 chr12 55377121 55377177 -65880353 + AT_rich Low_complexity Low_complexity 1 56 0 5 1007 1459 236 81 31 chr12 55377355 55377740 -65879790 - MTD LTR MaLR -9 410 7 5 1007 1024 254 127 3 chr12 55378512 55378812 -65878718 + ORR1D2 LTR MaLR 34 370 0 5 1007 246 241 35 24 chr12 55379099 55379184 -65878346 + PB1D10 SINE Alu 26 111 -6 5 1007 845 235 24 29 chr12 55379382 55379592 -65877938 - B3 SINE B2 -7 209 1 5 1007 443 118 0 13 chr12 55379971 55380048 -65877482 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1007 1806 141 105 61 chr12 55380064 55380426 -65877104 - ORR1C1 LTR MaLR 0 378 1 5 1007 265 293 93 0 chr12 55381411 55381486 -65876044 - L2b LINE L2 -16 3359 3278 5 1007 505 282 27 22 chr12 55381923 55382108 -65875422 - B3A SINE B2 -10 188 3 5 1007 248 226 0 46 chr12 55382120 55382185 -65875345 + GA-rich Low_complexity Low_complexity 5 66 0 5 1007 28 79 0 0 chr12 55382199 55382262 -65875268 + AT_rich Low_complexity Low_complexity 1 63 0 5 1007 316 367 0 0 chr12 55382638 55382818 -65874712 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1007 384 22 0 0 chr12 55382833 55382878 -65874652 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1007 251 305 65 19 chr12 55383003 55383110 -65874420 - MER20 DNA MER1_type -70 149 38 5 1007 399 127 0 0 chr12 55383783 55383846 -65873684 + (GGA)n Simple_repeat Simple_repeat 1 63 0 5 1007 306 50 0 0 chr12 55384071 55384111 -65873419 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1007 663 266 4 144 chr12 55384112 55384376 -65873154 - B4A SINE B4 -10 282 56 6 1007 611 182 86 16 chr12 55385258 55385386 -65872144 + B1_Mur1 SINE Alu 11 147 -2 6 1007 2895 181 37 26 chr12 55385412 55385981 -65871549 + Lx5 LINE L1 6475 7049 -1 6 1007 219 161 54 0 chr12 55386004 55386060 -65871470 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1007 315 0 0 0 chr12 55386064 55386099 -65871431 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1007 248 26 0 71 chr12 55386198 55386240 -65871290 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1007 713 160 61 0 chr12 55386240 55386371 -65871159 - B1_Mur4 SINE Alu -9 141 3 6 1007 1902 188 60 57 chr12 55387227 55387645 -65869885 - MTC LTR MaLR -2 419 1 6 1007 372 331 18 30 chr12 55388630 55388798 -65868732 - MIRb SINE MIR -77 191 26 6 1007 414 0 0 0 chr12 55389779 55389825 -65867705 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1007 269 311 65 32 chr12 55389837 55389960 -65867570 - RSINE1 SINE B4 -37 128 2 6 1007 2726 25 5 147 chr12 55390534 55390962 -65866568 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1007 426 266 16 31 chr12 55391240 55391368 -65866162 + B1F SINE Alu 22 147 -2 6 1007 594 301 100 4 chr12 55391641 55391891 -65865639 + MER2 DNA MER2_type 26 299 -46 6 1007 654 96 0 0 chr12 55392446 55392540 -65864990 + B2_Mm2 SINE B2 14 107 -88 6 1007 297 109 0 0 chr12 55392543 55392589 -65864941 + (A)n Simple_repeat Simple_repeat 1 46 0 6 1007 927 172 174 15 chr12 55393415 55393610 -65863920 - URR1A DNA MER1_type 0 226 1 6 1007 387 105 0 0 chr12 55395505 55395562 -65861968 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1007 1194 74 0 0 chr12 55396000 55396148 -65861382 + B1_Mus1 SINE Alu 1 148 0 6 1007 200 100 25 0 chr12 55396155 55396195 -65861335 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 6 1007 406 215 84 91 chr12 55396228 55396371 -65861159 - B1_Mus2 SINE Alu -4 143 2 6 1007 2343 68 84 0 chr12 55396419 55396741 -65860789 + MusHAL1 LINE L1 421 769 -2791 6 1007 1063 112 6 0 chr12 55396742 55396902 -65860628 + B2_Mm1a SINE B2 1 161 -32 6 1007 513 47 0 0 chr12 55396903 55396967 -65860563 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 6 1007 14704 60 11 7 chr12 55396967 55399028 -65858502 + MusHAL1 LINE L1 759 2824 -735 6 1007 417 39 0 0 chr12 55399035 55399086 -65858444 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1007 820 114 0 14 chr12 55399080 55399222 -65858308 + (TTCC)n Simple_repeat Simple_repeat 2 141 0 6 1007 249 159 0 0 chr12 55399216 55399260 -65858270 + CT-rich Low_complexity Low_complexity 3 46 0 6 1007 496 266 123 37 chr12 55399289 55399590 -65857940 + MTD LTR MaLR 12 366 -53 6 1007 890 227 43 19 chr12 55399733 55399944 -65857586 - B3 SINE B2 0 216 1 6 1007 183 42 0 0 chr12 55400930 55400954 -65856576 + (CAA)n Simple_repeat Simple_repeat 3 26 0 6 1007 279 0 0 0 chr12 55401702 55401733 -65855797 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1007 2314 165 51 43 chr12 55402657 55403170 -65854360 - RLTR12B LTR ERVK -11 517 1 6 1007 484 331 85 19 chr12 55403240 55403603 -65853927 + L2 LINE L2 2481 2867 -552 6 1007 297 320 48 16 chr12 55403804 55403928 -65853602 - MIR SINE MIR -112 150 23 6 1007 215 228 17 50 chr12 55405060 55405120 -65852410 + CT-rich Low_complexity Low_complexity 2 59 0 6 1007 184 289 58 67 chr12 55405160 55405264 -65852266 + MIR SINE MIR 118 220 -42 6 1007 577 217 49 28 chr12 55405314 55405456 -65852074 - B1_Mur1 SINE Alu -3 146 2 6 1007 225 250 62 0 chr12 55406290 55406354 -65851176 - MTEb LTR MaLR -26 353 286 6 1007 185 94 31 0 chr12 55406637 55406669 -65850861 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 6 1007 207 0 0 0 chr12 55406713 55406736 -65850794 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1007 1256 20 7 0 chr12 55406736 55406882 -65850648 - B1_Mus2 SINE Alu 0 147 1 6 1007 31 0 0 0 chr12 55407250 55407281 -65850249 + AT_rich Low_complexity Low_complexity 1 31 0 6 1007 204 40 0 0 chr12 55407323 55407348 -65850182 + (CTG)n Simple_repeat Simple_repeat 3 27 0 6 1007 774 40 0 0 chr12 55407665 55407765 -65849765 - B1_Mm SINE Alu -21 126 27 6 1007 845 197 103 10 chr12 55408329 55408524 -65849006 - B3 SINE B2 0 216 4 6 1007 282 282 0 0 chr12 55408812 55408883 -65848647 + ID4_ SINE ID 4 74 -9 6 1007 389 274 71 84 chr12 55409083 55409322 -65848208 + MER83B-int LTR ERV1 2943 3178 -1702 6 1007 257 186 144 44 chr12 55409556 55409646 -65847884 + MER31-int LTR ERV1 2998 3096 -3091 6 1007 391 242 106 106 chr12 55409658 55409942 -65847588 + MER31-int LTR ERV1 3082 3459 -2728 6 1007 1028 241 153 3 chr12 55409946 55410254 -65847276 + MTE2b LTR MaLR 19 372 -7 6 1007 251 366 12 0 chr12 55410554 55410636 -65846894 - ID4 SINE ID 0 83 1 6 1007 303 65 0 42 chr12 55411327 55411375 -65846155 - HAL1-3A_ME LINE L1 -835 2023 1978 6 1007 567 132 0 0 chr12 55411375 55411489 -65846041 + (TCTG)n Simple_repeat Simple_repeat 2 115 0 6 1007 441 196 128 0 chr12 55411490 55411592 -65845938 - B1_Mur2 SINE Alu -22 127 13 6 1007 229 167 0 62 chr12 55412863 55412927 -65844603 + T-rich Low_complexity Low_complexity 5 64 0 6 1007 547 204 73 29 chr12 55412951 55413087 -65844443 - B1_Mur4 SINE Alu 0 150 9 6 1007 308 227 15 0 chr12 55413590 55413656 -65843874 - ID_B1 SINE B4 -28 196 130 6 1007 237 83 0 0 chr12 55414514 55414550 -65842980 + (GCTG)n Simple_repeat Simple_repeat 2 37 0 6 1007 1113 30 0 0 chr12 55414993 55415126 -65842404 + (TTTC)n Simple_repeat Simple_repeat 4 136 0 6 1007 771 168 65 14 chr12 55415156 55415295 -65842235 - B1_Mur3 SINE Alu -1 148 3 6 1007 414 0 0 0 chr12 55415317 55415363 -65842167 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1007 530 257 21 0 chr12 55415363 55415507 -65842023 - RSINE1 SINE B4 -15 150 4 6 1007 221 370 52 57 chr12 55415804 55415996 -65841534 + MIR SINE MIR 59 249 -13 6 1007 264 256 0 24 chr12 55416797 55416881 -65840649 + L1ME4a LINE L1 5996 6077 -47 6 1007 240 111 0 0 chr12 55417739 55417775 -65839755 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1007 1140 29 0 0 chr12 55418651 55418787 -65838743 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 6 1007 774 0 0 0 chr12 55418880 55418966 -65838564 + (GAA)n Simple_repeat Simple_repeat 2 87 0 6 1007 374 250 131 16 chr12 55418971 55419162 -65838368 + L1MC3 LINE L1 7572 7784 -1 6 1007 271 217 43 0 chr12 55419420 55419489 -65838041 - ID4 SINE ID -10 73 2 6 1007 829 215 7 0 chr12 55419560 55419709 -65837821 - B1_Mur4 SINE Alu 0 150 1 6 1007 646 286 53 0 chr12 55419744 55419915 -65837615 - B3A SINE B2 -18 180 1 6 1007 338 327 35 23 chr12 55419964 55420136 -65837394 - MER5A DNA MER1_type 0 189 16 6 1007 262 189 19 0 chr12 55420913 55420966 -65836564 + ID_B1 SINE B4 122 175 -49 6 1007 246 258 91 0 chr12 55420966 55420979 -65836551 + B1_Mur2 SINE Alu 41 112 -37 6 1007 272 294 143 61 chr12 55421015 55421211 -65836319 + LTR16A1 LTR ERVL 58 269 -187 6 1007 701 245 48 12 chr12 55421598 55421763 -65835767 + B3A SINE B2 2 172 -26 6 1007 293 256 98 0 chr12 55421779 55421863 -65835667 - FLAM_A SINE Alu -219 76 1 6 1007 405 0 0 0 chr12 55421932 55421977 -65835553 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1007 204 67 0 0 chr12 55422056 55422086 -65835444 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6 1007 404 273 158 8 chr12 55422440 55422573 -65834957 - MLT1A0 LTR MaLR -1 364 212 6 1007 4438 22 0 0 chr12 55422735 55423228 -65834302 + MT2_Mm LTR ERVL 1 493 0 6 1007 252 272 105 0 chr12 55423260 55423374 -65834156 + Tigger13a DNA MER2_type 531 656 -115 6 1007 742 191 19 67 chr12 55424180 55424397 -65833133 - ORR1D2 LTR MaLR -7 387 175 6 1007 273 237 17 0 chr12 55424462 55424521 -65833009 - B4A SINE B4 -232 60 1 6 1007 4552 204 67 59 chr12 55425097 55425937 -65831593 + Lx7 LINE L1 6562 7458 -238 6 1007 1698 31 0 0 chr12 55425937 55426130 -65831400 - B2_Mm1t SINE B2 0 193 1 6 1007 4552 204 67 59 chr12 55426130 55426416 -65831114 + Lx7 LINE L1 7459 7696 0 6 1007 382 102 14 14 chr12 55426435 55426505 -65831025 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1007 193 320 13 39 chr12 55427374 55427452 -65830078 + MIR3 SINE MIR 85 160 -48 6 1007 317 375 0 0 chr12 55427673 55427825 -65829705 + (CACG)n Simple_repeat Simple_repeat 4 155 0 6 1007 1420 148 114 53 chr12 55428048 55428347 -65829183 - MTC LTR MaLR 0 421 105 6 1007 1922 196 82 31 chr12 55428347 55428763 -65828767 + RMER1B Other Other 486 922 -144 6 1007 238 192 39 0 chr12 55428782 55428834 -65828696 - RMER1B Other Other -975 91 38 6 1007 26 30 0 0 chr12 55429000 55429033 -65828497 + AT_rich Low_complexity Low_complexity 1 33 0 6 1007 285 191 0 0 chr12 55429195 55429244 -65828286 + T-rich Low_complexity Low_complexity 15 63 0 6 1007 1176 55 0 0 chr12 55429244 55429390 -65828140 - B1_Mm SINE Alu 0 147 2 6 1007 285 191 0 0 chr12 55429390 55429403 -65828127 + T-rich Low_complexity Low_complexity 2 14 0 6 1007 23 33 0 0 chr12 55429987 55430017 -65827513 + AT_rich Low_complexity Low_complexity 1 30 0 6 1007 30 100 0 0 chr12 55430424 55430524 -65827006 + AT_rich Low_complexity Low_complexity 1 100 0 6 1007 463 67 40 0 chr12 55430524 55430599 -65826931 + (TTTTC)n Simple_repeat Simple_repeat 3 80 0 6 1007 1228 48 0 0 chr12 55430599 55430746 -65826784 - B1_Mus1 SINE Alu 0 148 2 6 1007 1637 32 5 0 chr12 55430800 55430990 -65826540 - B2_Mm1t SINE B2 -1 192 2 6 1007 292 219 0 45 chr12 55431281 55431348 -65826182 - PB1D10 SINE Alu -23 94 31 7 1007 306 0 0 0 chr12 55431414 55431448 -65826082 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1007 199 140 20 20 chr12 55431510 55431561 -65825969 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1007 614 237 0 0 chr12 55432172 55432307 -65825223 + B3A SINE B2 8 142 -56 7 1007 1162 127 0 0 chr12 55432322 55432503 -65825027 - URR1A DNA MER1_type 0 226 46 7 1007 347 244 99 11 chr12 55433013 55433104 -65824426 - PB1D10 SINE Alu -10 107 9 7 1007 204 40 0 0 chr12 55433694 55433719 -65823811 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 7 1007 559 26 26 0 chr12 55433719 55433795 -65823735 + (GTTTG)n Simple_repeat Simple_repeat 2 80 0 7 1007 354 138 0 0 chr12 55434399 55434457 -65823073 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 7 1007 875 241 28 48 chr12 55434498 55434746 -65822784 + B4A SINE B4 50 292 0 7 1007 1147 292 30 16 chr12 55434876 55435241 -65822289 + MTEa LTR MaLR 10 379 0 7 1007 1173 259 43 32 chr12 55435388 55435735 -65821795 - ORR1E LTR MaLR -4 355 5 7 1007 291 257 0 51 chr12 55437263 55437341 -65820189 - ID4 SINE ID -8 75 2 7 1007 271 286 0 0 chr12 55437650 55437720 -65819810 + Charlie10 DNA MER1_type 1379 1448 -1374 7 1007 1499 232 51 31 chr12 55438403 55438853 -65818677 + RMER5 LTR ERV1 40 498 -36 7 1007 309 26 0 0 chr12 55438869 55438907 -65818623 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1007 561 270 111 17 chr12 55440025 55440206 -65817324 + B3A SINE B2 1 198 0 7 1007 253 233 151 25 chr12 55440366 55440485 -65817045 + L1MD LINE L1 4117 4250 -1896 7 1007 414 157 0 0 chr12 55440543 55440645 -65816885 + CT-rich Low_complexity Low_complexity 1 102 0 7 1007 379 252 99 0 chr12 55441785 55441896 -65815634 - PB1 SINE Alu -2 125 4 7 1007 554 229 187 16 chr12 55442726 55442908 -65814622 + B3 SINE B2 2 214 -2 7 1007 27 29 0 0 chr12 55442909 55442943 -65814587 + AT_rich Low_complexity Low_complexity 1 34 0 7 1008 234 344 117 0 chr12 55443652 55443780 -65813750 - MLT1L LTR MaLR -380 230 88 7 1008 2311 130 8 24 chr12 55443838 55444209 -65813321 - ORR1B2 LTR MaLR 0 367 3 7 1008 1444 313 52 5 chr12 55444417 55444970 -65812560 - L1MA5 LINE L1 -6 6294 5716 7 1008 261 0 0 0 chr12 55445029 55445058 -65812472 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1008 1154 62 0 20 chr12 55445058 55445195 -65812335 - B1_Mus2 SINE Alu -10 137 1 7 1008 1164 267 3 21 chr12 55445293 55445580 -65811950 - B4A SINE B4 -4 288 7 7 1008 678 126 7 20 chr12 55445600 55445698 -65811832 + polypyrimidine Low_complexity Low_complexity 46 144 0 7 1008 1017 128 0 0 chr12 55445698 55445878 -65811652 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1008 678 126 7 20 chr12 55445878 55445925 -65811605 + polypyrimidine Low_complexity Low_complexity 1 45 0 7 1008 459 229 77 116 chr12 55445939 55446146 -65811384 - L1MA5 LINE L1 -702 5598 5400 7 1008 412 193 68 0 chr12 55446698 55446786 -65810744 - RMER30 DNA MER1_type 0 202 109 7 1008 241 171 0 54 chr12 55446816 55446909 -65810621 + (TATG)n Simple_repeat Simple_repeat 4 91 0 7 1008 389 216 0 0 chr12 55446911 55446985 -65810545 - RMER30 DNA MER1_type -113 89 16 7 1008 450 267 46 73 chr12 55447100 55447318 -65810212 + MLT1C LTR MaLR 52 263 -204 7 1008 1370 221 129 0 chr12 55447399 55447770 -65809760 - MTD LTR MaLR 0 419 1 7 1008 1655 217 159 41 chr12 55447771 55448483 -65809047 - MTD-int LTR MaLR -1 1257 381 7 1008 317 145 16 0 chr12 55448499 55448561 -65808969 + CT-rich Low_complexity Low_complexity 2 64 0 7 1008 2801 152 142 4 chr12 55448568 55449088 -65808442 - RMER1B Other Other -4 1062 471 7 1008 1278 222 27 56 chr12 55449088 55449502 -65808028 - MTD-int LTR MaLR -856 402 1 7 1008 1491 167 131 31 chr12 55449515 55449873 -65807657 - MTD LTR MaLR -14 405 12 7 1008 457 218 40 107 chr12 55450013 55450162 -65807368 + B1_Mur4 SINE Alu 8 146 -2 7 1008 234 150 0 0 chr12 55450218 55450258 -65807272 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 1008 21 0 0 0 chr12 55450270 55450291 -65807239 + AT_rich Low_complexity Low_complexity 1 21 0 7 1008 25 0 0 0 chr12 55450411 55450436 -65807094 + AT_rich Low_complexity Low_complexity 1 25 0 7 1008 320 241 0 7 chr12 55451287 55451425 -65806105 + GA-rich Low_complexity Low_complexity 2 138 0 7 1008 961 135 11 17 chr12 55452088 55452269 -65805261 + CT-rich Low_complexity Low_complexity 1 180 0 7 1008 432 0 0 0 chr12 55452474 55452522 -65805008 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1008 351 271 28 57 chr12 55452609 55452750 -65804780 + RMER15 LTR ERVL 425 561 -14 7 1008 333 68 0 0 chr12 55452873 55452917 -65804613 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 7 1008 1050 103 0 20 chr12 55453337 55453486 -65804044 + B1_Mus1 SINE Alu 3 148 0 7 1008 280 94 19 19 chr12 55453993 55454047 -65803483 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 7 1008 306 0 0 0 chr12 55454783 55454817 -65802713 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1008 785 208 0 68 chr12 55456426 55456617 -65800913 + B3A SINE B2 21 198 0 7 1008 329 336 127 0 chr12 55456704 55456933 -65800597 + L1MA4 LINE L1 5036 5293 -850 7 1008 1612 279 86 21 chr12 55456927 55457484 -65800046 + Lx8 LINE L1 6879 7471 -2 7 1008 1220 276 43 110 chr12 55457506 55458341 -65799189 + L1MA4 LINE L1 5293 6071 -229 7 1008 362 213 84 11 chr12 55458524 55458619 -65798911 + ID_B1 SINE B4 116 217 -7 7 1008 3024 193 112 77 chr12 55458689 55459492 -65798038 + RMER19B LTR ERVK 1 831 -71 7 1008 2174 96 3 70 chr12 55459494 55459853 -65797677 + IAPLTR1a_Mm LTR ERVK 1 335 -2 7 1008 4619 50 66 20 chr12 55459854 55460492 -65797038 + IAPEz-int LTR ERVK 3 662 -5819 7 1008 454 66 0 32 chr12 55460492 55460555 -65796975 + IAPEz-int LTR ERVK 1359 1419 -5062 7 1008 1865 115 4 4 chr12 55460544 55460806 -65796724 + IAPEz-int LTR ERVK 2236 2497 -5183 7 1008 923 88 24 0 chr12 55460801 55460926 -65796604 + IAPEy-int LTR ERVK 4799 4926 -2587 7 1008 1780 10 0 0 chr12 55460926 55461119 -65796411 + IAPEz-int LTR ERVK 3525 3717 -2764 7 1008 8819 40 9 0 chr12 55461118 55462145 -65795385 + IAPEz-int LTR ERVK 5446 6481 0 7 1008 1977 89 3 71 chr12 55462145 55462495 -65795035 + IAPLTR1a_Mm LTR ERVK 1 326 -11 7 1008 363 153 14 14 chr12 55462506 55462579 -65794951 + RMER19B LTR ERVK 830 902 0 7 1008 189 258 43 57 chr12 55463121 55463191 -65794339 - L2a LINE L2 -1 3425 3357 7 1008 586 272 214 7 chr12 55463451 55463703 -65793827 + MTEb LTR MaLR 1 305 -74 7 1008 197 0 71 0 chr12 55463703 55463731 -65793799 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1008 316 289 19 19 chr12 55463731 55463797 -65793733 + MTEb LTR MaLR 306 371 -8 7 1008 2780 66 143 139 chr12 55464031 55464541 -65792989 - RLTR1B LTR ERV1 0 512 1 7 1008 22 35 0 0 chr12 55464868 55464897 -65792633 + AT_rich Low_complexity Low_complexity 1 29 0 7 1008 643 191 15 15 chr12 55465143 55465276 -65792254 + B1_Mur1 SINE Alu 12 144 -5 7 1008 4473 16 2 0 chr12 55466165 55466657 -65790873 - MT2_Mm LTR ERVL 0 493 1 7 1008 321 0 0 0 chr12 55466657 55466695 -65790835 - MERVL-int LTR ERVL 0 5485 5448 7 1008 362 167 46 35 chr12 55466695 55466782 -65790748 - ORR1A3-int LTR MaLR -1323 640 553 7 1008 26993 18 0 0 chr12 55466782 55469752 -65787778 - MERVL-int LTR ERVL -125 5360 2390 7 1008 312 0 0 0 chr12 55469746 55469781 -65787749 - MERVL-int LTR ERVL -5450 35 1 7 1008 4489 14 2 0 chr12 55469781 55470273 -65787257 - MT2_Mm LTR ERVL 0 493 1 7 1008 340 323 39 0 chr12 55470514 55470644 -65786886 - RSINE1 SINE B4 -29 136 2 7 1008 232 235 14 56 chr12 55470647 55470719 -65786811 + MER45R DNA Tip100 1513 1581 0 7 1008 436 267 37 65 chr12 55470948 55471164 -65786366 + L1MA6 LINE L1 6058 6267 -33 7 1008 478 242 30 0 chr12 55471164 55471263 -65786267 - B1F1 SINE Alu -46 103 2 7 1008 437 134 0 0 chr12 55472307 55472374 -65785156 - ORR1D1 LTR MaLR 0 374 308 7 1008 354 123 0 0 chr12 55472374 55472431 -65785099 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1008 213 39 0 0 chr12 55472562 55472588 -65784942 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1008 395 316 74 5 chr12 55472650 55472866 -65784664 + L1ME3B LINE L1 5661 5891 -349 7 1008 216 333 0 27 chr12 55472868 55472942 -65784588 + ID2 SINE ID 3 74 -9 7 1008 261 0 0 0 chr12 55472980 55473009 -65784521 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 7 1008 1003 173 86 0 chr12 55473014 55473211 -65784319 - B3 SINE B2 -2 214 1 7 1008 282 56 0 0 chr12 55473545 55473581 -65783949 + (TAA)n Simple_repeat Simple_repeat 2 37 0 7 1008 345 235 0 0 chr12 55474318 55474386 -65783144 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1008 603 233 0 0 chr12 55474387 55474537 -65782993 + (TATATG)n Simple_repeat Simple_repeat 2 151 0 7 1008 519 276 25 31 chr12 55475986 55476147 -65781383 + L1MA6 LINE L1 4741 4900 -1243 7 1008 1499 47 16 5 chr12 55476147 55476339 -65781191 - B2_Mm2 SINE B2 0 195 2 7 1008 314 263 105 0 chr12 55476480 55476575 -65780955 + PB1D10 SINE Alu 13 117 0 7 1008 352 216 169 116 chr12 55476583 55476772 -65780758 + L1MA6 LINE L1 5008 5206 -937 7 1008 398 287 129 114 chr12 55476843 55477160 -65780370 + MTEa LTR MaLR 40 379 0 7 1008 372 185 12 36 chr12 55477183 55477267 -65780263 + MTEa-int LTR MaLR 27 108 -1472 7 1008 1647 261 131 48 chr12 55477777 55478554 -65778976 + MTEa-int LTR MaLR 103 944 -636 7 1008 1320 230 45 13 chr12 55478553 55478866 -65778664 + MTEa-int LTR MaLR 1198 1520 -60 7 1008 366 333 88 50 chr12 55478921 55479240 -65778290 + ORR1E LTR MaLR 29 359 0 7 1008 508 276 45 2 chr12 55479242 55479457 -65778073 + L1MA6 LINE L1 5228 5451 -846 7 1008 3555 149 204 8 chr12 55479461 55480192 -65777338 - RLTR25B LTR ERVK 0 1028 155 7 1008 369 0 0 0 chr12 55480238 55480279 -65777251 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1008 180 0 0 0 chr12 55480279 55480298 -65777232 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1008 905 239 83 21 chr12 55480339 55480664 -65776866 + L1MA6 LINE L1 5452 5796 -504 7 1008 361 253 61 61 chr12 55480636 55480800 -65776730 + L1MA6 LINE L1 6136 6299 -1 7 1008 852 214 52 5 chr12 55480982 55481175 -65776355 + B3 SINE B2 5 206 -10 7 1008 776 256 165 72 chr12 55481668 55481961 -65775569 + MTD LTR MaLR 2 336 -83 7 1008 572 241 14 34 chr12 55481961 55482107 -65775423 + B1_Mur3 SINE Alu 1 143 -6 7 1008 776 256 165 72 chr12 55482107 55482181 -65775349 + MTD LTR MaLR 337 404 -15 7 1008 745 181 0 43 chr12 55482181 55482320 -65775210 - B1_Mur1 SINE Alu -15 134 2 7 1008 226 146 62 0 chr12 55482326 55482374 -65775156 + MTD LTR MaLR 367 417 -2 7 1008 29 47 0 0 chr12 55483713 55483756 -65773774 + AT_rich Low_complexity Low_complexity 1 43 0 7 1008 308 267 0 0 chr12 55483800 55483875 -65773655 - B3A SINE B2 -123 75 1 7 1008 1820 138 93 0 chr12 55484110 55484421 -65773109 + MTC LTR MaLR 1 340 -81 7 1008 1805 94 77 45 chr12 55484425 55484829 -65772701 + ORR1A2 LTR MaLR 5 421 0 7 1008 393 22 0 0 chr12 55485108 55485154 -65772376 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 1008 498 286 8 8 chr12 55485749 55485883 -65771647 + ID_B1 SINE B4 84 217 -7 7 1008 2850 136 98 4 chr12 55486795 55487274 -65770256 - RLTR28 LTR ERVL 0 524 1 7 1008 843 179 0 14 chr12 55489256 55489403 -65768127 + B1_Mur2 SINE Alu 5 149 0 7 1008 484 297 25 13 chr12 55489555 55489712 -65767818 + RSINE1 SINE B4 3 161 -4 7 1008 238 244 0 0 chr12 55489861 55489939 -65767591 + (CGATG)n Simple_repeat Simple_repeat 5 82 0 8 1008 287 339 48 0 chr12 55490191 55490315 -65767215 + MIRb SINE MIR 118 247 -21 8 1008 240 196 0 35 chr12 55491343 55491393 -65766137 - ID_B1 SINE B4 -104 120 73 8 1008 577 301 14 0 chr12 55491393 55491539 -65765991 + ID_B1 SINE B4 4 151 -73 8 1008 501 250 234 13 chr12 55491539 55491774 -65765756 + B4A SINE B4 3 289 -3 8 1008 232 259 0 0 chr12 55491777 55491831 -65765699 + (CATA)n Simple_repeat Simple_repeat 3 56 0 8 1008 444 123 41 0 chr12 55491840 55491913 -65765617 + ID_B1 SINE B4 146 221 -3 8 1008 2995 28 69 0 chr12 55492281 55492644 -65764886 + RLTR10 LTR ERVK 1 388 -2 8 1008 7993 53 0 2 chr12 55492656 55493616 -65763914 + RLTR10-int LTR ERVK 41 998 -989 8 1008 393 224 62 39 chr12 55493680 55493810 -65763720 + RLTR10-int LTR ERVK 1462 1594 -5987 8 1008 9077 14 1 0 chr12 55493892 55494886 -65762644 + RLTR10-int LTR ERVK 990 1984 -3 8 1008 3006 25 69 0 chr12 55494888 55495251 -65762279 + RLTR10 LTR ERVK 1 388 -2 8 1008 306 73 0 0 chr12 55495465 55495506 -65762024 + (CCCCCT)n Simple_repeat Simple_repeat 1 41 0 8 1008 239 326 257 0 chr12 55495616 55495803 -65761727 + MLT1J LTR MaLR 194 428 -84 8 1008 1766 178 3 9 chr12 55495808 55496131 -65761399 + MTD LTR MaLR 21 341 -78 8 1008 180 49 23 68 chr12 55496211 55496255 -65761275 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 8 1008 929 142 7 20 chr12 55496258 55496409 -65761121 - B1_Mur3 SINE Alu 0 149 1 8 1008 270 176 0 0 chr12 55496838 55496889 -65760641 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1008 2707 162 68 33 chr12 55497996 55498569 -65758961 + RMER20B LTR ERVK 1 593 -34 8 1008 185 65 32 0 chr12 55499422 55499453 -65758077 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1008 867 286 25 8 chr12 55499633 55499869 -65757661 - B4A SINE B4 -5 287 48 8 1008 215 302 0 0 chr12 55500435 55500488 -65757042 - MIRm SINE MIR -122 154 102 1 1008 313 268 0 58 chr12 55500679 55500766 -65756764 - RSINE1 SINE B4 0 165 84 2 1008 1024 205 24 104 chr12 55500952 55501366 -65756164 - RMER17B LTR ERVK -577 381 1 3 1008 450 0 0 0 chr12 55502263 55502313 -65755217 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 4 1008 1493 64 37 0 chr12 55502313 55502501 -65755029 - B2_Mm2 SINE B2 0 195 1 5 1008 183 42 0 0 chr12 55503009 55503033 -65754497 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 6 1008 235 305 0 0 chr12 55503337 55503455 -65754075 + ID4 SINE ID 7 124 -28 7 1008 3022 284 89 49 chr12 55504128 55505485 -65752045 + Lx8 LINE L1 6063 7473 0 8 1008 277 308 14 0 chr12 55507012 55507158 -65750372 + (TATATG)n Simple_repeat Simple_repeat 6 153 0 9 1008 285 100 0 0 chr12 55508992 55509042 -65748488 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 1008 1084 80 0 0 chr12 55509042 55509180 -65748350 - B1_Mus1 SINE Alu -9 139 2 1 1008 1295 106 21 0 chr12 55509525 55509713 -65747817 + B2_Mm2 SINE B2 2 193 -2 1 1008 1012 154 0 0 chr12 55510748 55510897 -65746633 + B1_Mur4 SINE Alu 1 149 -1 1 1008 22 0 0 0 chr12 55511701 55511723 -65745807 + AT_rich Low_complexity Low_complexity 1 22 0 1 1008 1259 53 0 12 chr12 55512171 55512341 -65745189 - B2_Mm2 SINE B2 -26 169 2 1 1008 702 35 0 0 chr12 55512390 55512475 -65745055 + (CAAAA)n Simple_repeat Simple_repeat 3 87 0 1 1008 1054 137 189 0 chr12 55513505 55513695 -65743835 - URR1A DNA MER1_type 0 226 1 1 1008 1794 161 144 24 chr12 55515811 55516123 -65741407 + MTC LTR MaLR 1 354 -67 1 1008 1255 6 16 44 chr12 55516123 55516305 -65741225 + (TTCCC)n Simple_repeat Simple_repeat 2 178 0 1 1008 1794 161 144 24 chr12 55516305 55516368 -65741162 + MTC LTR MaLR 355 419 -2 1 1008 4198 169 57 39 chr12 55516590 55517474 -65740056 + RMER19B LTR ERVK 3 902 0 2 1008 1065 88 0 0 chr12 55517514 55517673 -65739857 + (TG)n Simple_repeat Simple_repeat 2 160 0 2 1008 306 239 16 115 chr12 55517673 55517795 -65739735 - Lx9 LINE L1 -228 7416 7178 2 1008 773 150 143 161 chr12 55517795 55518025 -65739505 + URR1A DNA MER1_type 1 226 0 2 1008 665 285 25 5 chr12 55518066 55518267 -65739263 - Lx9 LINE L1 -827 6817 6613 2 1008 392 267 9 2 chr12 55518380 55518500 -65739030 + L1MA6 LINE L1 6172 6299 -1 2 1008 290 312 55 9 chr12 55518512 55518622 -65738908 + RSINE1 SINE B4 10 124 -41 2 1008 615 27 0 0 chr12 55518626 55518699 -65738831 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1008 539 184 21 7 chr12 55518701 55518843 -65738687 + (TA)n Simple_repeat Simple_repeat 2 145 0 2 1008 308 214 199 0 chr12 55518932 55519014 -65738516 - PB1D10 SINE Alu -11 109 12 2 1008 33 0 0 0 chr12 55519035 55519068 -65738462 + AT_rich Low_complexity Low_complexity 1 33 0 2 1008 1788 322 103 22 chr12 55519789 55520104 -65737426 - Lx8 LINE L1 -183 7290 6946 3 1008 261 83 0 0 chr12 55520104 55520140 -65737390 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1008 1788 322 103 22 chr12 55520140 55520636 -65736894 - Lx8 LINE L1 -528 6945 6414 3 1008 514 256 88 0 chr12 55520660 55520785 -65736745 - B1F1 SINE Alu -7 142 7 3 1008 710 131 28 35 chr12 55520840 55521126 -65736404 + CT-rich Low_complexity Low_complexity 1 283 0 3 1008 708 179 67 0 chr12 55521219 55521353 -65736177 - B1_Mur1 SINE Alu -6 143 1 3 1008 453 256 79 16 chr12 55521492 55521619 -65735911 + RSINE1 SINE B4 14 148 -17 3 1008 1620 119 145 6 chr12 55521799 55522111 -65735419 - ORR1A4 LTR MaLR -3 326 1 3 1008 455 288 46 99 chr12 55522120 55522227 -65735303 + L1MC4 LINE L1 6820 6931 -1111 3 1008 1061 109 0 0 chr12 55522227 55522365 -65735165 + B1_Mus2 SINE Alu 1 138 -9 3 1008 275 0 29 0 chr12 55522365 55522400 -65735130 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1008 455 288 46 99 chr12 55522400 55522615 -65734915 + L1MC4 LINE L1 6932 7125 -917 3 1008 251 171 0 0 chr12 55522732 55522773 -65734757 + RSINE1 SINE B4 87 127 -38 4 1008 1369 173 171 30 chr12 55523188 55523516 -65734014 + ORR1D1 LTR MaLR 1 374 0 4 1008 1596 194 75 3 chr12 55523518 55523865 -65733665 + ORR1D1-int LTR MaLR 3 374 -996 4 1008 463 174 101 43 chr12 55523913 55524051 -65733479 + L1MC4 LINE L1 6975 7120 -922 4 1008 753 227 52 113 chr12 55524441 55524670 -65732860 - B3 SINE B2 -1 215 1 4 1008 369 0 0 0 chr12 55524674 55524715 -65732815 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1008 1263 34 0 13 chr12 55524821 55524971 -65732559 - B1_Mus1 SINE Alu 0 148 1 4 1008 807 239 82 109 chr12 55526482 55526848 -65730682 + MTEa LTR MaLR 18 373 -6 4 1008 291 377 44 0 chr12 55527337 55527520 -65730010 - MIR SINE MIR -41 221 31 4 1008 825 304 25 53 chr12 55527779 55528134 -65729396 + L1MC1 LINE L1 5988 6332 -1 4 1008 212 363 26 26 chr12 55528611 55528727 -65728803 - MIRc SINE MIR -116 152 37 4 1008 450 215 0 0 chr12 55529620 55529713 -65727817 + BC1_Mm scRNA scRNA 2 94 -58 5 1008 351 0 0 0 chr12 55530858 55530897 -65726633 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1008 958 199 5 53 chr12 55531832 55532039 -65725491 - B3A SINE B2 0 198 2 5 1008 656 281 83 5 chr12 55532130 55532334 -65725196 + ORR1E LTR MaLR 6 225 -134 5 1008 3362 191 24 31 chr12 55532352 55532693 -65724837 + Lx6 LINE L1 6792 7142 -318 5 1008 198 0 0 0 chr12 55532693 55532715 -65724815 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 5 1008 3362 191 24 31 chr12 55532715 55533047 -65724483 + Lx6 LINE L1 7143 7460 0 5 1008 495 0 0 0 chr12 55533276 55533331 -65724199 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1008 510 181 118 83 chr12 55533332 55533501 -65724029 + ORR1E LTR MaLR 196 370 0 5 1008 261 266 10 137 chr12 55533522 55533638 -65723892 + L1M5 LINE L1 4496 4592 -1554 5 1008 5060 58 3 0 chr12 55533638 55534262 -65723268 - L1_Mus1 LINE L1 -1 6566 5941 5 1008 261 266 10 137 chr12 55534262 55534350 -65723180 + L1M5 LINE L1 4593 4674 -1472 5 1008 810 192 18 0 chr12 55534491 55534658 -65722872 + URR1B DNA MER1_type 51 220 -5 5 1008 1008 236 55 29 chr12 55534681 55535026 -65722504 + MER57E1 LTR ERV1 19 372 0 6 1008 252 0 0 0 chr12 55535079 55535107 -65722423 + (TAA)n Simple_repeat Simple_repeat 3 30 0 6 1008 363 312 100 8 chr12 55535136 55535327 -65722203 + L1M5 LINE L1 4902 5116 -1030 5 1008 471 18 0 0 chr12 55535327 55535383 -65722147 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1008 363 312 100 8 chr12 55535383 55535440 -65722090 + L1M5 LINE L1 5117 5173 -973 5 1008 345 266 79 7 chr12 55535499 55535639 -65721891 + B4A SINE B4 122 271 -21 6 1008 341 22 0 21 chr12 55535651 55535698 -65721832 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1008 216 0 0 0 chr12 55535755 55535779 -65721751 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1008 23 0 0 0 chr12 55535885 55535908 -65721622 + AT_rich Low_complexity Low_complexity 1 23 0 6 1008 3469 43 2 2 chr12 55535911 55536329 -65721201 - L1Md_F3 LINE L1 -14 6570 6153 6 1008 324 252 149 37 chr12 55536344 55536505 -65721025 + L1M5 LINE L1 5295 5473 -767 5 1008 299 304 55 30 chr12 55536998 55537198 -65720332 + L1M5 LINE L1 5637 5841 -399 5 1008 678 260 13 0 chr12 55537412 55537562 -65719968 - B3A SINE B2 -20 178 27 6 1008 537 58 0 0 chr12 55537693 55537762 -65719768 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1008 666 145 0 0 chr12 55537987 55538125 -65719405 + (TC)n Simple_repeat Simple_repeat 1 138 0 7 1008 616 243 7 13 chr12 55538159 55538309 -65719221 - RSINE1 SINE B4 -14 151 3 7 1008 373 303 56 56 chr12 55538336 55538497 -65719033 - RSINE1 SINE B4 -1 164 4 7 1008 240 35 0 0 chr12 55538645 55538674 -65718856 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1008 314 232 158 20 chr12 55540599 55540700 -65716830 - B1F2 SINE Alu -1 119 5 7 1008 21 0 0 0 chr12 55541831 55541852 -65715678 + AT_rich Low_complexity Low_complexity 1 21 0 7 1008 237 33 0 0 chr12 55544066 55544096 -65713434 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 7 1008 308 186 95 32 chr12 55544111 55544193 -65713337 - PB1D10 SINE Alu -20 97 17 7 1008 365 348 69 22 chr12 55544700 55544976 -65712554 + L1MA4 LINE L1 5899 6187 -113 7 1008 193 275 90 90 chr12 55545825 55545925 -65711605 - L2c LINE L2 -8 3379 3280 7 1008 195 129 0 0 chr12 55545925 55545956 -65711574 + (TAA)n Simple_repeat Simple_repeat 2 32 0 8 1008 870 283 75 67 chr12 55546464 55546835 -65710695 + MTEa LTR MaLR 6 379 0 8 1008 594 114 0 0 chr12 55547289 55547377 -65710153 + B3 SINE B2 1 88 -128 8 1008 193 317 151 0 chr12 55547995 55548101 -65709429 - MIR SINE MIR -54 214 86 8 1008 204 40 0 0 chr12 55548667 55548692 -65708838 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 1008 848 121 7 0 chr12 55549748 55549889 -65707641 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 8 1008 180 176 0 0 chr12 55550215 55550249 -65707281 + (CAA)n Simple_repeat Simple_repeat 2 35 0 8 1008 195 42 0 0 chr12 55550871 55550895 -65706635 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1008 198 103 0 0 chr12 55552298 55552327 -65705203 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1008 25 0 0 0 chr12 55552565 55552590 -65704940 + AT_rich Low_complexity Low_complexity 1 25 0 8 1008 660 320 57 65 chr12 55553965 55554316 -65703214 - ORR1E LTR MaLR -1 358 11 9 1008 231 250 0 32 chr12 55554483 55554545 -65702985 - MER58C DNA MER1_type -3 212 153 9 1008 189 107 0 0 chr12 55554925 55554953 -65702577 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 9 1008 201 177 0 0 chr12 55554970 55554992 -65702538 + T-rich Low_complexity Low_complexity 41 62 0 9 1008 201 74 0 0 chr12 55554992 55555019 -65702511 + (TGG)n Simple_repeat Simple_repeat 1 27 0 9 1008 201 177 0 0 chr12 55555019 55555058 -65702472 + T-rich Low_complexity Low_complexity 2 40 0 9 1008 477 0 0 0 chr12 55556525 55556578 -65700952 + (TA)n Simple_repeat Simple_repeat 2 54 0 9 1008 314 274 84 0 chr12 55556578 55556673 -65700857 - MER5A DNA MER1_type -27 162 60 9 1008 516 226 0 25 chr12 55557214 55557332 -65700198 + PB1D10 SINE Alu 2 116 -1 9 1008 295 280 49 41 chr12 55557509 55557632 -65699898 - MLT1A1 LTR MaLR -4 404 281 9 1008 242 233 20 109 chr12 55558281 55558382 -65699148 - HAL1 LINE L1 -5 2502 2411 1 1008 641 322 159 29 chr12 55558585 55559586 -65697944 - HAL1 LINE L1 -328 2179 1049 1 1008 701 33 0 0 chr12 55559590 55559680 -65697850 + B1_Mus2 SINE Alu 58 147 0 1 1008 207 0 0 0 chr12 55559723 55559746 -65697784 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1008 304 189 40 26 chr12 55559747 55559823 -65697707 - HAL1 LINE L1 -1464 1043 967 1 1008 403 219 0 0 chr12 55559844 55559917 -65697613 - ID4_ SINE ID -10 73 1 1 1008 209 278 0 18 chr12 55559986 55560041 -65697489 + CT-rich Low_complexity Low_complexity 3 56 0 1 1008 249 359 38 8 chr12 55560428 55560560 -65696970 + LTR33 LTR ERVL 368 503 -12 1 1008 587 190 95 0 chr12 55562306 55562422 -65695108 + B1_Mur3 SINE Alu 1 127 -22 1 1008 355 38 38 0 chr12 55563461 55563514 -65694016 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1 1008 275 227 0 10 chr12 55563530 55563628 -65693902 + (TA)n Simple_repeat Simple_repeat 1 97 0 1 1008 1991 114 31 9 chr12 55566236 55566555 -65690975 + ORR1A1 LTR MaLR 21 346 0 1 1008 279 0 0 0 chr12 55566744 55566775 -65690755 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 1008 287 267 51 120 chr12 55567689 55567923 -65689607 + L2b LINE L2 3193 3410 -16 1 1008 1226 156 84 137 chr12 55568656 55569035 -65688495 + ORR1B2 LTR MaLR 9 367 0 1 1008 459 328 78 5 chr12 55569651 55569844 -65687686 - MIR SINE MIR -44 218 12 1 1008 1996 110 0 59 chr12 55569866 55570203 -65687327 + ORR1A4 LTR MaLR 1 317 -12 1 1008 1992 89 8 138 chr12 55570399 55570777 -65686753 + ORR1A4 LTR MaLR 1 329 0 1 1008 286 352 70 21 chr12 55571000 55571186 -65686344 + LTR16A LTR ERVL 250 444 -7 1 1009 189 107 0 0 chr12 55574752 55574780 -65682750 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1009 1841 92 110 55 chr12 55574976 55575285 -65682245 - ORR1A3 LTR MaLR 0 326 1 1 1009 642 188 15 8 chr12 55575748 55575871 -65681659 + ORR1A3 LTR MaLR 4 127 -219 1 1009 1049 101 6 19 chr12 55575871 55576033 -65681497 + B2_Mm2 SINE B2 2 161 -34 1 1009 231 36 0 0 chr12 55576034 55576062 -65681468 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1009 1716 57 0 0 chr12 55576062 55576291 -65681239 + ORR1A3 LTR MaLR 98 326 0 1 1009 706 266 102 61 chr12 55576599 55576943 -65680587 + ORR1E LTR MaLR 1 358 -1 1 1009 1118 117 0 6 chr12 55577425 55577605 -65679925 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 1 1009 302 185 92 0 chr12 55578041 55578106 -65679424 - 5S rRNA rRNA -32 89 19 1 1009 192 77 0 0 chr12 55578124 55578150 -65679380 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1 1009 1124 243 71 28 chr12 55578253 55578605 -65678925 + ORR1D2 LTR MaLR 4 370 0 1 1009 488 237 159 83 chr12 55578851 55579127 -65678403 + L1ME3 LINE L1 5516 5812 -361 1 1009 226 222 108 32 chr12 55579283 55579376 -65678154 + L1ME3 LINE L1 6054 6153 -9 1 1009 462 192 120 60 chr12 55580422 55580555 -65676975 + B1F SINE Alu 1 141 -8 1 1009 225 65 0 0 chr12 55581317 55581348 -65676182 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1009 185 61 0 83 chr12 55581357 55581372 -65676158 + (GAAA)n Simple_repeat Simple_repeat 3 15 0 1 1009 1432 68 21 10 chr12 55581372 55581565 -65675965 + B2_Mm2 SINE B2 1 195 0 1 1009 185 61 0 83 chr12 55581565 55581585 -65675945 + (GAAA)n Simple_repeat Simple_repeat 4 23 0 1 1009 186 43 0 0 chr12 55582119 55582142 -65675388 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 1 1009 252 226 0 0 chr12 55582450 55582512 -65675018 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1009 274 290 19 92 chr12 55582722 55582910 -65674620 - L2a LINE L2 -34 3392 3192 1 1009 367 299 171 0 chr12 55583473 55583637 -65673893 + MIRb SINE MIR 69 260 -8 1 1009 793 179 43 134 chr12 55583773 55584005 -65673525 + MTD LTR MaLR 1 211 -208 1 1009 564 179 17 59 chr12 55584026 55584177 -65673353 + B3A SINE B2 70 214 -2 1 1009 1215 115 0 0 chr12 55584186 55584421 -65673109 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 1 1009 870 175 126 5 chr12 55584425 55584615 -65672915 + MTD LTR MaLR 207 419 0 1 1009 282 265 93 8 chr12 55586446 55586564 -65670966 + MamRep605 Unknown Unknown 208 335 -541 1 1009 428 263 61 0 chr12 55586976 55587090 -65670440 + ID_B1 SINE B4 102 222 -2 1 1009 886 243 215 39 chr12 55587106 55587492 -65670038 - Lx7 LINE L1 -1780 5916 5431 1 1009 306 164 16 0 chr12 55587495 55587556 -65669974 + ORR1D1 LTR MaLR 1 62 -312 1 1009 273 294 78 0 chr12 55588030 55588132 -65669398 + B1F SINE Alu 38 147 -2 1 1009 770 232 12 0 chr12 55588151 55588315 -65669215 + B3 SINE B2 46 211 -5 1 1009 271 152 100 17 chr12 55588336 55588396 -65669134 + ID4_ SINE ID 3 67 -16 1 1009 591 315 131 17 chr12 55588800 55589091 -65668439 - HAL1b LINE L1 -650 1359 1036 1 1009 604 252 47 16 chr12 55589625 55589881 -65667649 - MTEb LTR MaLR -16 363 43 1 1009 550 179 0 0 chr12 55589875 55589970 -65667560 + B3 SINE B2 6 100 -116 1 1009 276 227 0 0 chr12 55590027 55590093 -65667437 - MTEb LTR MaLR -313 66 1 1 1009 210 221 217 14 chr12 55590093 55590162 -65667368 - MER5A DNA MER1_type -103 86 4 1 1009 441 0 0 0 chr12 55591296 55591345 -65666185 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1009 318 67 0 0 chr12 55592700 55592745 -65664785 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1009 300 264 0 0 chr12 55592859 55592931 -65664599 - PB1D9 SINE Alu -18 102 31 1 1009 834 152 140 0 chr12 55592933 55593104 -65664426 + URR1A DNA MER1_type 1 195 -31 1 1009 25 0 0 0 chr12 55594288 55594313 -65663217 + AT_rich Low_complexity Low_complexity 1 25 0 1 1009 247 294 18 44 chr12 55594784 55594898 -65662632 + L1MB8 LINE L1 6040 6150 -28 1 1009 304 283 31 99 chr12 55595382 55595543 -65661987 - MLT1J1 LTR MaLR -294 150 1 1 1009 1291 306 81 37 chr12 55596798 55597626 -65659904 - L1ME1 LINE L1 -1 6178 5315 1 1009 215 333 30 0 chr12 55597661 55597727 -65659803 + ID4 SINE ID 1 68 -15 1 1009 310 310 50 33 chr12 55597742 55597922 -65659608 - L1MD LINE L1 -856 5290 5108 1 1009 405 307 8 30 chr12 55597978 55598109 -65659421 + B3A SINE B2 24 151 -47 1 1009 593 265 6 50 chr12 55598125 55598284 -65659246 + RSINE1 SINE B4 14 165 0 1 1009 943 105 0 0 chr12 55598896 55599029 -65658501 - B1_Mus1 SINE Alu -11 137 5 1 1009 663 280 0 0 chr12 55599095 55599238 -65658292 - RSINE1 SINE B4 -19 146 4 1 1009 338 339 26 16 chr12 55599646 55599838 -65657692 + RMER15 LTR ERVL 324 517 -58 1 1009 1237 232 37 61 chr12 55600441 55600849 -65656681 + Lx7 LINE L1 7299 7696 0 1 1009 576 0 0 0 chr12 55601355 55601419 -65656111 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1009 279 0 0 0 chr12 55601466 55601497 -65656033 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1009 268 232 29 35 chr12 55601889 55602063 -65655467 + GA-rich Low_complexity Low_complexity 3 175 0 1 1009 268 327 20 0 chr12 55602162 55602262 -65655268 + ID4_ SINE ID 1 101 -51 1 1009 690 251 38 11 chr12 55602451 55602636 -65654894 - B3 SINE B2 0 216 27 1 1009 1057 52 73 0 chr12 55602674 55602810 -65654720 - B1_Mus1 SINE Alu 0 148 3 1 1009 845 180 12 23 chr12 55602881 55603052 -65654478 + B2_Mm2 SINE B2 1 169 -26 1 1009 737 198 165 0 chr12 55603053 55603235 -65654295 - B3 SINE B2 -4 212 1 1 1009 249 276 114 11 chr12 55605099 55605187 -65652343 + B1_Mus2 SINE Alu 51 147 0 1 1009 558 271 31 43 chr12 55605627 55605789 -65651741 + B3A SINE B2 12 171 -27 1 1009 21 0 0 0 chr12 55605892 55605913 -65651617 + AT_rich Low_complexity Low_complexity 1 21 0 1 1009 1686 27 18 31 chr12 55605927 55606154 -65651376 - L1Md_F3 LINE L1 0 6584 6361 1 1009 272 296 117 23 chr12 55606154 55606282 -65651248 + MTEa LTR MaLR 4 143 -236 1 1009 260 146 0 35 chr12 55606312 55606369 -65651161 + C-rich Low_complexity Low_complexity 2 56 0 1 1009 646 190 0 41 chr12 55606955 55607076 -65650454 + B1_Mus2 SINE Alu 10 125 -22 1 1009 253 316 7 95 chr12 55607076 55607102 -65650428 + ID_B1 SINE B4 91 224 0 1 1009 282 337 131 35 chr12 55607499 55607782 -65649748 - MLT1J LTR MaLR 0 512 203 1 1009 198 0 0 0 chr12 55607955 55607977 -65649553 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1009 378 0 0 0 chr12 55608038 55608080 -65649450 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1009 1205 41 0 7 chr12 55608332 55608478 -65649052 + B1_Mus2 SINE Alu 2 146 -1 1 1009 297 0 0 0 chr12 55608483 55608516 -65649014 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1 1009 396 0 0 0 chr12 55608540 55608584 -65648946 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1009 2232 145 16 19 chr12 55609287 55609666 -65647864 - ORR1C1 LTR MaLR 0 378 1 1 1009 239 260 75 38 chr12 55609684 55609764 -65647766 - B4A SINE B4 -8 284 202 1 1009 1138 62 0 14 chr12 55609943 55610091 -65647439 - B1_Mus1 SINE Alu 0 148 3 1 1009 1200 45 0 0 chr12 55611275 55611430 -65646100 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 1009 252 0 0 0 chr12 55611611 55611639 -65645891 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 1009 368 40 20 0 chr12 55612752 55612802 -65644728 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1009 411 211 39 0 chr12 55613099 55613203 -65644327 + PB1D10 SINE Alu 4 111 -6 1 1009 1150 256 3 21 chr12 55614770 55615053 -65642477 + B4A SINE B4 1 278 -14 1 1009 533 115 11 0 chr12 55615055 55615142 -65642388 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1009 230 253 233 36 chr12 55615453 55615646 -65641884 + L1MEg LINE L1 1307 1537 -4547 1 1009 1283 157 13 22 chr12 55615908 55616136 -65641394 + URR1A DNA MER1_type 1 226 0 1 1009 369 204 50 20 chr12 55616675 55616775 -65640755 + MER53 DNA hAT 5 107 -86 1 1009 4933 161 50 35 chr12 55617086 55617300 -65640230 - RLTR25B LTR ERVK 0 1028 822 2 1009 387 0 0 0 chr12 55617300 55617343 -65640187 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1009 477 0 0 0 chr12 55617343 55617395 -65640135 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1009 4933 161 50 35 chr12 55617395 55617860 -65639670 - RLTR25B LTR ERVK -207 821 343 2 1009 2490 75 22 12 chr12 55617860 55618184 -65639346 - ORR1A2 LTR MaLR 0 327 1 2 1009 4933 161 50 35 chr12 55618184 55618515 -65639015 - RLTR25B LTR ERVK -686 342 2 2 1009 1195 187 0 28 chr12 55618663 55618878 -65638652 + B3 SINE B2 5 213 -3 2 1009 192 264 37 19 chr12 55619650 55619704 -65637826 + MIRm SINE MIR 24 78 -198 2 1009 567 203 7 68 chr12 55619793 55619941 -65637589 - B3 SINE B2 -1 215 77 2 1009 668 206 12 25 chr12 55620147 55620325 -65637205 + B3 SINE B2 18 189 -6 2 1009 228 310 41 49 chr12 55621863 55621985 -65635545 + MIRc SINE MIR 111 231 -37 2 1009 1158 29 0 0 chr12 55622255 55622393 -65635137 + (GGGAA)n Simple_repeat Simple_repeat 5 142 0 2 1009 1034 284 45 33 chr12 55622453 55622788 -65634742 + ORR1E LTR MaLR 21 359 0 2 1009 295 293 15 54 chr12 55623459 55623589 -65633941 - L1MC5 LINE L1 -32 7929 7805 2 1009 498 46 0 0 chr12 55623674 55623739 -65633791 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1009 344 158 0 0 chr12 55623813 55623870 -65633660 - B3A SINE B2 -141 57 1 2 1009 328 279 232 19 chr12 55623886 55624145 -65633385 - L1MC5 LINE L1 -262 7699 7386 2 1009 640 250 0 34 chr12 55624225 55624374 -65633156 + B1F SINE Alu 1 144 -5 2 1009 23 0 0 0 chr12 55624374 55624397 -65633133 + AT_rich Low_complexity Low_complexity 1 23 0 2 1009 702 264 65 108 chr12 55624457 55624903 -65632627 - L1MC5 LINE L1 -721 7240 6814 2 1009 280 204 0 0 chr12 55624903 55624957 -65632573 + MTE2b LTR MaLR 1 54 -325 2 1009 22 0 0 0 chr12 55625146 55625168 -65632362 + AT_rich Low_complexity Low_complexity 1 22 0 2 1009 540 269 0 0 chr12 55625197 55625316 -65632214 - RSINE1 SINE B4 -43 122 4 2 1009 1616 150 108 73 chr12 55625526 55625907 -65631623 + ORR1B1 LTR MaLR 1 394 0 2 1009 223 26 24 49 chr12 55626907 55626948 -65630582 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1009 1411 58 3 14 chr12 55626964 55627261 -65630269 + (TAGA)n Simple_repeat Simple_repeat 1 294 0 2 1009 4394 180 21 11 chr12 55627278 55628041 -65629489 - Lx7 LINE L1 -346 7350 6580 2 1009 980 232 92 48 chr12 55628127 55628421 -65629109 - MTE2b LTR MaLR -70 309 3 2 1009 666 217 42 60 chr12 55628491 55628509 -65629021 - RSINE1 SINE B4 0 165 148 2 1009 330 26 0 0 chr12 55628509 55628548 -65628982 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1009 666 217 42 60 chr12 55628548 55628696 -65628834 - RSINE1 SINE B4 -18 147 2 2 1009 407 206 176 18 chr12 55629187 55629298 -65628232 + B3A SINE B2 76 201 -15 2 1009 423 0 0 0 chr12 55629299 55629346 -65628184 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1009 21 36 0 0 chr12 55629347 55629375 -65628155 + AT_rich Low_complexity Low_complexity 1 28 0 2 1009 216 0 0 0 chr12 55629475 55629499 -65628031 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1009 336 280 11 0 chr12 55629633 55629726 -65627804 - MLT1A0 LTR MaLR -27 338 245 2 1009 756 262 32 0 chr12 55630282 55630469 -65627061 - MLT1A0 LTR MaLR -164 201 9 2 1009 236 310 120 0 chr12 55630478 55630578 -65626952 - MLT1A0-int LTR MaLR 0 1735 1624 2 1009 231 273 0 0 chr12 55631083 55631149 -65626381 - MLT1A0-int LTR MaLR -175 1560 1495 2 1009 479 270 57 74 chr12 55631162 55631338 -65626192 + B4A SINE B4 2 174 -118 2 1009 622 204 0 0 chr12 55631381 55631494 -65626036 + PB1D10 SINE Alu 5 117 0 2 1009 958 292 106 117 chr12 55631771 55632070 -65625460 - MLT1A0-int LTR MaLR -912 823 581 2 1009 309 51 0 0 chr12 55632070 55632109 -65625421 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1009 958 292 106 117 chr12 55632109 55632157 -65625373 - MLT1A0-int LTR MaLR -1155 580 542 2 1009 627 273 67 37 chr12 55632157 55632427 -65625103 - B4A SINE B4 -14 278 1 2 1009 958 292 106 117 chr12 55632427 55632900 -65624630 - MLT1A0-int LTR MaLR -1194 541 11 2 1009 437 310 136 3 chr12 55632913 55633231 -65624299 - MLT1A0 LTR MaLR -3 362 3 2 1009 312 91 0 0 chr12 55634504 55634548 -65622982 + (TCTCCC)n Simple_repeat Simple_repeat 5 48 0 2 1009 198 208 0 0 chr12 55634560 55634608 -65622922 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1009 542 113 0 9 chr12 55634615 55634722 -65622808 + (TC)n Simple_repeat Simple_repeat 2 107 0 2 1009 207 0 0 0 chr12 55635442 55635465 -65622065 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1009 737 264 25 10 chr12 55636590 55636793 -65620737 - B3 SINE B2 -10 206 1 2 1009 204 40 0 0 chr12 55636882 55636907 -65620623 + (C)n Simple_repeat Simple_repeat 1 25 0 2 1009 400 349 0 0 chr12 55636950 55637059 -65620471 - RSINE1 SINE B4 -20 145 37 2 1009 445 0 136 0 chr12 55637152 55637277 -65620253 + (CCTG)n Simple_repeat Simple_repeat 2 143 0 2 1009 23 0 0 0 chr12 55637728 55637751 -65619779 + AT_rich Low_complexity Low_complexity 1 23 0 2 1009 592 272 5 8 chr12 55638292 55638442 -65619088 + ID_B1 SINE B4 82 231 -61 2 1009 236 226 164 50 chr12 55639061 55639201 -65618329 - MIRb SINE MIR 0 268 113 2 1009 1036 167 102 8 chr12 55639318 55639554 -65617976 - ORR1B2 LTR MaLR 0 367 110 2 1009 234 143 0 0 chr12 55639562 55639604 -65617926 - B1_Mus2 SINE Alu 0 147 106 2 1009 482 155 0 80 chr12 55640030 55640099 -65617431 - Lx2 LINE L1 -719 6278 6210 2 1009 352 119 15 0 chr12 55640099 55640166 -65617364 + Lx2 LINE L1 6930 6997 0 2 1009 482 155 0 80 chr12 55640166 55640208 -65617322 - Lx2 LINE L1 -788 6209 6176 2 1009 697 22 22 0 chr12 55640227 55640318 -65617212 + (GTTTG)n Simple_repeat Simple_repeat 2 94 0 2 1009 872 69 92 8 chr12 55640318 55640440 -65617090 - B1_Mus1 SINE Alu -9 139 6 2 1009 889 220 11 11 chr12 55640471 55640655 -65616875 + B3 SINE B2 27 210 -6 2 1009 2244 136 32 0 chr12 55640727 55641101 -65616429 + ORR1B1 LTR MaLR 1 386 -8 2 1009 3199 205 72 91 chr12 55641772 55642468 -65615062 + Lx7 LINE L1 6809 7483 -213 2 1009 201 74 0 0 chr12 55642468 55642495 -65615035 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 2 1009 3199 205 72 91 chr12 55642495 55642564 -65614966 + Lx7 LINE L1 7484 7550 -146 2 1009 2053 114 65 107 chr12 55642564 55642889 -65614641 + ORR1C2 LTR MaLR 1 334 -50 2 1009 1178 68 0 0 chr12 55642889 55643037 -65614493 + B1_Mus1 SINE Alu 1 148 0 2 1009 2053 114 65 107 chr12 55643037 55643112 -65614418 + ORR1C2 LTR MaLR 335 384 0 2 1009 3199 205 72 91 chr12 55643112 55643250 -65614280 + Lx7 LINE L1 7551 7695 -1 2 1009 483 291 249 0 chr12 55643975 55644240 -65613290 + L1MC2 LINE L1 5422 5752 -592 2 1009 860 218 22 30 chr12 55644261 55644454 -65613076 - B3A SINE B2 0 195 1 2 1009 474 230 26 0 chr12 55644454 55644567 -65612963 + L1MC2 LINE L1 5741 5856 -488 2 1009 864 258 44 4 chr12 55644578 55644827 -65612703 + L1MC2 LINE L1 6042 6300 -44 2 1009 763 65 0 9 chr12 55645182 55645290 -65612240 + B1_Mur4 SINE Alu 44 150 0 2 1009 260 336 58 13 chr12 55645415 55645569 -65611961 - L2a LINE L2 0 3426 3266 2 1009 367 147 0 171 chr12 55645950 55646032 -65611498 + tRNA-Lys-AAA tRNA tRNA 5 72 -4 2 1009 1113 64 0 0 chr12 55646134 55646275 -65611255 + B1_Mus2 SINE Alu 2 142 -5 2 1009 275 247 91 0 chr12 55646478 55646555 -65610975 + ERVL-int LTR ERVL 5335 5418 -339 2 1009 641 286 139 39 chr12 55646612 55646943 -65610587 + MLT1C LTR MaLR 21 384 -83 2 1009 423 0 0 0 chr12 55647892 55647939 -65609591 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1009 192 40 0 0 chr12 55648149 55648174 -65609356 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1009 1143 53 0 0 chr12 55649029 55649180 -65608350 + (TGG)n Simple_repeat Simple_repeat 3 153 0 2 1009 725 172 276 6 chr12 55649206 55649376 -65608154 - B3 SINE B2 0 216 1 2 1009 654 197 14 27 chr12 55649383 55649529 -65608001 - B1_Mur1 SINE Alu 0 149 6 2 1009 288 310 61 15 chr12 55649420 55649551 -65607979 - B4 SINE B4 -88 204 68 2 1009 189 0 0 0 chr12 55649555 55649576 -65607954 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 2 1009 794 147 88 7 chr12 55649586 55649723 -65607807 - B1_Mur3 SINE Alu 0 149 2 2 1009 2166 144 47 5 chr12 55649907 55649986 -65607544 + MTC LTR MaLR 1 79 -342 2 1009 3448 33 2 0 chr12 55649986 55650381 -65607149 - MTA_Mm LTR MaLR 0 396 1 2 1009 2166 144 47 5 chr12 55650381 55650705 -65606825 + MTC LTR MaLR 80 421 0 2 1009 495 281 180 5 chr12 55651440 55651651 -65605879 - B4A SINE B4 -44 248 1 2 1009 837 240 100 29 chr12 55651900 55652140 -65605390 + B4A SINE B4 36 292 0 2 1009 282 240 13 13 chr12 55652229 55652305 -65605225 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 2 1009 492 283 156 19 chr12 55652305 55652575 -65604955 - L1MA8 LINE L1 -353 5938 5632 2 1009 237 291 28 55 chr12 55652601 55652710 -65604820 + L2c LINE L2 3281 3386 -1 2 1009 516 182 10 0 chr12 55652777 55652876 -65604654 + PB1D9 SINE Alu 21 120 0 2 1009 223 284 45 0 chr12 55653226 55653293 -65604237 + RSINE1 SINE B4 3 72 -93 2 1009 192 40 0 0 chr12 55653347 55653372 -65604158 + (GA)n Simple_repeat Simple_repeat 1 25 0 2 1009 1933 101 32 7 chr12 55653453 55653763 -65603767 - ORR1A4 LTR MaLR -11 318 1 2 1009 240 35 0 0 chr12 55653991 55654020 -65603510 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1009 302 311 48 0 chr12 55654159 55654262 -65603268 + MLT1J LTR MaLR 238 345 -167 2 1009 761 181 31 71 chr12 55654290 55654486 -65603044 + B3 SINE B2 29 216 0 2 1009 203 125 0 24 chr12 55654504 55654545 -65602985 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 2 1009 30 27 0 0 chr12 55654599 55654636 -65602894 + AT_rich Low_complexity Low_complexity 1 37 0 2 1009 230 281 35 0 chr12 55656153 55656210 -65601320 - MLT1G LTR MaLR -503 88 30 2 1009 249 128 0 0 chr12 55656234 55656281 -65601249 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1009 242 259 143 36 chr12 55656677 55656789 -65600741 + L3 LINE CR1 2187 2310 -2179 2 1009 1010 116 0 20 chr12 55657045 55657194 -65600336 + B1_Mur4 SINE Alu 5 150 0 2 1009 251 53 51 34 chr12 55657194 55657253 -65600277 + (CAAAAA)n Simple_repeat Simple_repeat 1 60 0 2 1009 621 313 188 12 chr12 55657267 55657465 -65600065 - MLT1F2 LTR MaLR -80 480 269 2 1009 432 0 0 0 chr12 55657465 55657513 -65600017 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1009 621 313 188 12 chr12 55657513 55657718 -65599812 - MLT1F2 LTR MaLR -292 268 8 2 1009 251 319 15 92 chr12 55657958 55658089 -65599441 - MLT1F1 LTR MaLR -81 488 368 2 1009 418 229 48 41 chr12 55659587 55659733 -65597797 - MIRb SINE MIR -31 237 91 2 1009 1098 54 0 0 chr12 55660075 55660205 -65597325 + B1_Mus2 SINE Alu 2 131 -16 2 1009 1450 77 0 30 chr12 55660357 55660557 -65596973 + B2_Mm2 SINE B2 2 195 0 3 1009 1057 220 211 0 chr12 55660726 55661039 -65596491 - MTEa LTR MaLR 0 379 1 3 1009 1158 71 0 0 chr12 55661950 55662091 -65595439 + B1_Mus1 SINE Alu 2 142 -6 3 1009 840 146 0 0 chr12 55662133 55662311 -65595219 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1009 222 158 0 0 chr12 55662359 55662397 -65595133 + B1F1 SINE Alu 70 107 -42 3 1009 456 210 2 76 chr12 55662447 55662574 -65594956 + B1_Mur3 SINE Alu 6 149 0 3 1009 25 0 0 0 chr12 55662574 55662599 -65594931 + AT_rich Low_complexity Low_complexity 1 25 0 3 1009 306 274 0 0 chr12 55662782 55662855 -65594675 + MLT1J LTR MaLR 105 177 -335 3 1009 864 284 20 20 chr12 55662861 55663163 -65594367 - Tigger5 DNA MER2_type 0 2406 2105 3 1009 548 259 86 60 chr12 55663150 55663384 -65594146 - Tigger5 DNA MER2_type -2090 316 77 3 1009 248 341 0 0 chr12 55663588 55663676 -65593854 + MER5A1 DNA MER1_type 73 160 -6 3 1009 488 294 79 19 chr12 55664183 55664398 -65593132 + L1MD2 LINE L1 5663 5890 -469 3 1009 225 343 49 28 chr12 55664414 55664558 -65592972 + B1F SINE Alu 1 147 -2 3 1009 347 239 14 0 chr12 55664558 55664629 -65592901 + ID4_ SINE ID 2 73 -10 3 1009 1297 81 35 0 chr12 55664689 55664862 -65592668 + B2_Mm1t SINE B2 2 180 -13 3 1009 321 156 9 0 chr12 55664881 55664945 -65592585 + B2_Mm2 SINE B2 47 114 -102 3 1009 24 85 0 0 chr12 55664960 55665019 -65592511 + AT_rich Low_complexity Low_complexity 1 59 0 3 1009 336 232 143 54 chr12 55665169 55665386 -65592144 + L1MD2 LINE L1 6101 6300 -59 3 1009 23 0 0 0 chr12 55665392 55665415 -65592115 + AT_rich Low_complexity Low_complexity 1 23 0 3 1009 319 145 13 34 chr12 55665424 55665491 -65592039 - B2_Mm2 SINE B2 -82 116 46 3 1009 1266 88 12 0 chr12 55665527 55665698 -65591832 - B2_Mm1t SINE B2 -19 174 2 3 1009 354 198 86 86 chr12 55665822 55665938 -65591592 + MT2B LTR ERVL 163 278 -323 3 1009 665 176 64 0 chr12 55665835 55665960 -65591570 + B1_Mur3 SINE Alu 12 144 -5 3 1009 849 92 0 0 chr12 55665960 55666080 -65591450 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 3 1009 1248 91 0 0 chr12 55666081 55666257 -65591273 + (GAGAA)n Simple_repeat Simple_repeat 2 177 0 3 1009 1509 150 88 0 chr12 55666279 55666573 -65590957 - IAPEY3_LTR LTR ERVK -12 320 1 3 1009 216 0 0 0 chr12 55666717 55666741 -65590789 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1009 207 0 0 0 chr12 55666741 55666763 -65590767 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1009 1060 101 0 0 chr12 55666763 55666901 -65590629 - B1_Mus1 SINE Alu -9 139 2 3 1009 835 264 75 41 chr12 55667008 55667064 -65590466 - Tigger7 DNA MER2_type -23 2468 2424 3 1009 746 234 114 79 chr12 55667064 55667407 -65590123 - ORR1E LTR MaLR -4 355 1 3 1009 835 264 75 41 chr12 55667407 55667670 -65589860 - Tigger7 DNA MER2_type -68 2423 2138 3 1009 351 154 0 0 chr12 55668182 55668247 -65589283 + (CCG)n Simple_repeat Simple_repeat 3 67 0 3 1009 281 93 19 0 chr12 55668795 55668849 -65588681 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3 1009 1780 204 109 86 chr12 55669080 55669568 -65587962 + RLTR19 LTR ERVK 1 499 0 3 1009 261 139 0 0 chr12 55669970 55670013 -65587517 + (TTG)n Simple_repeat Simple_repeat 2 44 0 3 1009 216 24 0 68 chr12 55670015 55670059 -65587471 + (GTTTG)n Simple_repeat Simple_repeat 1 41 0 3 1009 1705 206 110 12 chr12 55670253 55670652 -65586878 - RMER10A LTR ERVL 0 442 5 3 1009 1488 134 35 4 chr12 55670652 55670907 -65586623 + ORR1B2 LTR MaLR 2 264 -103 3 1009 3184 48 8 5 chr12 55670907 55671302 -65586228 + MTA_Mm LTR MaLR 1 396 0 3 1009 7833 79 4 48 chr12 55671302 55672309 -65585221 + MTA_Mm-int LTR MaLR 1 980 -118 3 1009 1110 62 14 0 chr12 55672309 55672453 -65585077 - B1_Mm SINE Alu 0 147 2 3 1009 7833 79 4 48 chr12 55672453 55672531 -65584999 + MTA_Mm-int LTR MaLR 981 1042 -56 3 1009 243 0 0 0 chr12 55672531 55672558 -65584972 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 3 1009 7833 79 4 48 chr12 55672558 55672619 -65584911 + MTA_Mm-int LTR MaLR 1043 1098 0 3 1009 1360 90 176 3 chr12 55672619 55672932 -65584598 + MTA_Mm LTR MaLR 1 367 0 3 1009 410 220 9 57 chr12 55672941 55673047 -65584483 + MTA_Mm-int LTR MaLR 3 103 -1406 3 1009 240 59 0 0 chr12 55673047 55673081 -65584449 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1009 872 43 9 0 chr12 55673081 55673197 -65584333 - B1_Mm SINE Alu -11 136 20 3 1009 674 169 30 83 chr12 55673185 55673331 -65584199 + MTA_Mm-int LTR MaLR 83 228 -1281 3 1009 2331 147 45 0 chr12 55673331 55673705 -65583825 + ORR1B1 LTR MaLR 3 393 -1 3 1009 674 169 30 83 chr12 55673705 55673726 -65583804 + MTA_Mm-int LTR MaLR 229 241 -1268 3 1009 1027 63 0 7 chr12 55673731 55673874 -65583656 - B1_Mm SINE Alu 0 147 6 3 1009 445 143 109 11 chr12 55673888 55673980 -65583550 + MTA_Mm-int LTR MaLR 223 323 -1186 3 1009 843 137 60 0 chr12 55673987 55674155 -65583375 + MTA_Mm-int LTR MaLR 763 940 -569 3 1009 689 247 0 0 chr12 55674177 55674323 -65583207 - B1_Mus1 SINE Alu -2 146 1 3 1009 536 181 15 38 chr12 55674355 55674487 -65583043 - B2_Mm2 SINE B2 -9 186 58 3 1009 274 248 100 39 chr12 55675253 55675267 -65582263 + CYRA11_Mm Unknown Y-chromosome 158 179 -438 3 1009 733 131 57 21 chr12 55675267 55675408 -65582122 - URR1B DNA MER1_type 0 225 80 3 1009 1531 60 0 0 chr12 55675561 55675743 -65581787 - L1Md_F2 LINE L1 -355 6227 6046 3 1009 2580 60 0 18 chr12 55675743 55676084 -65581446 + L1Md_F2 LINE L1 6248 6582 0 3 1009 612 0 0 0 chr12 55676289 55676357 -65581173 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1009 243 167 403 0 chr12 55676771 55676843 -65580687 - URR1B DNA MER1_type -125 100 1 3 1009 445 179 94 4 chr12 55677423 55677533 -65579997 - B1_Mus1 SINE Alu -1 119 3 3 1009 324 256 0 11 chr12 55677545 55677636 -65579894 + MER57C2 LTR ERV1 345 434 0 3 1009 1313 138 40 86 chr12 55677771 55677937 -65579593 - MTC-int LTR MaLR -8 1250 1090 3 1009 988 136 30 111 chr12 55677937 55678135 -65579395 + B2_Mm2 SINE B2 2 183 -12 3 1009 1313 138 40 86 chr12 55678135 55678294 -65579236 - MTC-int LTR MaLR -169 1089 940 3 1009 905 169 66 11 chr12 55678330 55678658 -65578872 - RMER6B LTR ERVK -68 393 1 3 1009 2998 113 48 22 chr12 55678658 55678737 -65578793 - MYSERV6-int LTR ERVK 0 8959 8888 3 1009 1480 38 16 31 chr12 55678737 55678909 -65578621 + B2_Mm2 SINE B2 1 173 -22 3 1009 1152 69 0 0 chr12 55678909 55679053 -65578477 + B1_Mm SINE Alu 2 145 -2 3 1009 180 0 0 0 chr12 55679053 55679073 -65578457 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 1009 1480 38 16 31 chr12 55679073 55679090 -65578440 + B2_Mm2 SINE B2 174 187 -8 3 1009 2998 113 48 22 chr12 55679090 55679473 -65578057 - MYSERV6-int LTR ERVK -72 8887 8485 3 1009 2071 74 38 8 chr12 55679682 55679999 -65577531 - IAPLTR2b LTR ERVK -3 354 1 3 1009 4020 174 54 81 chr12 55680079 55681001 -65576529 - RMER19B LTR ERVK -3 899 3 3 1009 530 299 57 40 chr12 55681057 55681408 -65576122 - RMER20A LTR ERVK -394 466 113 3 1009 7332 107 58 91 chr12 55681521 55682019 -65575511 - MYSERV6-int LTR ERVK -465 8494 7977 3 1009 1397 81 0 11 chr12 55682019 55682206 -65575324 - B2_Mm2 SINE B2 -8 187 3 3 1009 7332 107 58 91 chr12 55682206 55682250 -65575280 - MYSERV6-int LTR ERVK -983 7976 7976 3 1009 1149 55 7 0 chr12 55682250 55682395 -65575135 - B1_Mm SINE Alu 0 147 2 3 1009 7332 107 58 91 chr12 55682395 55683218 -65574312 - MYSERV6-int LTR ERVK -983 7976 7174 3 1009 1826 85 35 7 chr12 55683218 55683496 -65574034 + RMER6A LTR ERVK 13 298 -458 3 1009 2331 187 26 75 chr12 55683496 55684039 -65573491 + RMER19C LTR ERVK 1 516 -95 3 1009 1210 145 22 127 chr12 55684039 55684307 -65573223 + RMER19B LTR ERVK 1 240 -662 3 1009 763 52 0 10 chr12 55684307 55684404 -65573126 - L1_Mm LINE L1 -358 5525 5430 3 1009 1352 112 0 0 chr12 55684402 55684599 -65572931 + L1_Mm LINE L1 5254 5450 -433 3 1009 310 146 0 35 chr12 55684682 55684739 -65572791 + B2_Mm2 SINE B2 47 101 -94 3 1009 324 0 0 0 chr12 55684765 55684801 -65572729 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1009 533 162 40 0 chr12 55684836 55684935 -65572595 + RMER19C LTR ERVK 509 611 0 3 1009 861 119 5 123 chr12 55684936 55685156 -65572374 + RMER6A LTR ERVK 296 489 -267 3 1009 495 118 0 0 chr12 55685167 55685243 -65572287 + (AGGGGG)n Simple_repeat Simple_repeat 5 80 0 3 1009 1634 103 19 4 chr12 55685243 55685507 -65572023 + RMER6A LTR ERVK 489 756 0 3 1009 1512 177 222 58 chr12 55685507 55686202 -65571328 - MTC-int LTR MaLR -313 945 18 3 1009 1861 126 65 3 chr12 55686204 55686514 -65571016 - MTC LTR MaLR 0 421 93 3 1009 411 205 32 89 chr12 55687462 55687585 -65569945 + PB1D10 SINE Alu 1 116 -1 3 1009 229 218 11 22 chr12 55687825 55687914 -65569616 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 3 1009 879 262 102 16 chr12 55687925 55688068 -65569462 - B4A SINE B4 -14 278 136 3 1009 627 26 0 0 chr12 55688068 55688145 -65569385 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 1009 879 262 102 16 chr12 55688145 55688257 -65569273 - B4A SINE B4 -157 135 2 3 1009 642 26 0 0 chr12 55688331 55688407 -65569123 + (TTGG)n Simple_repeat Simple_repeat 2 77 0 3 1009 947 151 14 0 chr12 55688407 55688546 -65568984 - B1_Mur4 SINE Alu -9 141 1 3 1009 210 143 0 0 chr12 55688569 55688604 -65568926 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1009 1098 75 0 14 chr12 55688689 55688837 -65568693 + B1_Mm SINE Alu 1 146 -1 3 1009 425 318 39 8 chr12 55688868 55688995 -65568535 + B4 SINE B4 76 206 -86 3 1009 772 174 0 22 chr12 55688883 55689018 -65568512 + B1_Mur1 SINE Alu 6 137 -12 3 1009 432 0 0 0 chr12 55689018 55689066 -65568464 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1009 189 0 0 0 chr12 55689068 55689089 -65568441 + (CAGG)n Simple_repeat Simple_repeat 2 22 0 3 1009 847 136 20 7 chr12 55689130 55689278 -65568252 + B1_Mur4 SINE Alu 1 150 0 3 1009 2667 52 6 0 chr12 55689637 55689962 -65567568 + ORR1A2 LTR MaLR 1 327 0 3 1009 401 305 0 9 chr12 55690357 55690463 -65567067 + PB1D10 SINE Alu 13 117 0 3 1009 270 307 0 33 chr12 55690463 55690554 -65566976 + GA-rich Low_complexity Low_complexity 1 88 0 3 1009 569 220 113 18 chr12 55690555 55690800 -65566730 + L1MB7 LINE L1 5607 5903 -397 3 1009 1118 75 14 0 chr12 55690800 55690946 -65566584 + B1_Mus1 SINE Alu 1 148 0 3 1009 693 181 0 0 chr12 55690949 55691082 -65566448 + GA-rich Low_complexity Low_complexity 4 136 0 3 1009 747 244 34 6 chr12 55691268 55691424 -65566106 + B3A SINE B2 1 162 -36 3 1009 1023 152 0 0 chr12 55691424 55691602 -65565928 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1009 747 244 34 6 chr12 55691602 55691622 -65565908 + B3A SINE B2 163 182 -16 3 1009 408 125 0 0 chr12 55691624 55691688 -65565842 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1009 1100 89 0 0 chr12 55691775 55691921 -65565609 - B1_Mus2 SINE Alu 0 147 2 3 1009 1131 136 17 11 chr12 55692046 55692224 -65565306 + B2_Mm1t SINE B2 1 179 -14 3 1009 212 218 0 18 chr12 55692318 55692374 -65565156 + B2_Mm2 SINE B2 47 101 -94 3 1009 230 0 33 0 chr12 55692398 55692428 -65565102 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 3 1009 1157 75 0 0 chr12 55692465 55692611 -65564919 + B1_Mm SINE Alu 2 147 0 3 1009 712 229 210 18 chr12 55692669 55692945 -65564585 + L1MB2 LINE L1 5829 6157 -14 4 1009 653 284 127 12 chr12 55693461 55693800 -65563730 - L1MA6 LINE L1 -13 6287 5910 4 1009 452 299 11 11 chr12 55693922 55694101 -65563429 + MER104 DNA Tc2 2 180 -1 4 1009 305 295 0 0 chr12 55694187 55694265 -65563265 + B4A SINE B4 2 79 -213 4 1009 2166 142 66 5 chr12 55694266 55694647 -65562883 - MTC LTR MaLR 0 421 18 4 1009 874 137 0 35 chr12 55694802 55694946 -65562584 + B1_Mus1 SINE Alu 5 143 -5 4 1009 180 77 0 0 chr12 55694954 55694980 -65562550 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 1009 281 204 140 84 chr12 55695082 55695189 -65562341 - RMER10A LTR ERVL -312 130 18 4 1009 326 61 0 20 chr12 55695203 55695253 -65562277 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1009 689 211 7 20 chr12 55696032 55696182 -65561348 + B1_Mur1 SINE Alu 2 149 0 4 1009 1476 48 16 26 chr12 55697047 55697238 -65560292 - B2_Mm2 SINE B2 -6 189 1 4 1009 1114 68 0 0 chr12 55697416 55697549 -65559981 + B1_Mus1 SINE Alu 4 136 -12 4 1009 1052 103 0 6 chr12 55697549 55697715 -65559815 + (GAAA)n Simple_repeat Simple_repeat 3 167 0 4 1009 1139 71 0 0 chr12 55698291 55698432 -65559098 - B1_Mus2 SINE Alu -5 142 2 4 1009 198 316 79 0 chr12 55698432 55698508 -65559022 - MIR SINE MIR -149 113 32 4 1009 279 162 73 0 chr12 55699369 55699437 -65558093 - B3 SINE B2 0 216 144 4 1009 707 221 77 48 chr12 55699634 55699654 -65557876 + B3 SINE B2 2 21 -195 4 1009 3662 31 28 2 chr12 55699654 55700079 -65557451 + RLTR10C LTR ERVK 1 436 0 4 1009 707 221 77 48 chr12 55700079 55700198 -65557332 + B3 SINE B2 22 152 -64 4 1009 6375 86 30 38 chr12 55700198 55701135 -65556395 + RLTR13B3 LTR ERVK 1 929 0 4 1009 707 221 77 48 chr12 55701135 55701203 -65556327 + B3 SINE B2 153 214 -2 4 1009 569 229 8 0 chr12 55701229 55701351 -65556179 + B3 SINE B2 1 123 -93 4 1009 753 300 73 0 chr12 55701386 55701606 -65555924 + B4A SINE B4 39 274 -18 4 1009 1063 224 17 74 chr12 55701869 55702168 -65555362 + B4A SINE B4 1 282 -10 4 1009 243 260 37 46 chr12 55702201 55702310 -65555220 - RMER5 LTR ERV1 -270 264 157 4 1009 790 65 0 0 chr12 55702328 55702436 -65555094 - RLTR13B1 LTR ERVK -21 872 765 4 1009 413 48 32 0 chr12 55702473 55702536 -65554994 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 4 1009 328 324 78 35 chr12 55702749 55703005 -65554525 + RMER5 LTR ERV1 112 378 -156 4 1009 276 186 0 0 chr12 55703169 55703228 -65554302 + (TTG)n Simple_repeat Simple_repeat 3 61 0 4 1009 866 144 0 46 chr12 55703243 55703396 -65554134 - B1_Mur2 SINE Alu -2 147 2 4 1009 186 43 0 0 chr12 55703520 55703543 -65553987 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 1009 935 91 21 14 chr12 55703543 55703688 -65553842 - B2_Mm2 SINE B2 -15 180 35 4 1009 1426 65 0 31 chr12 55703874 55704066 -65553464 + B2_Mm2 SINE B2 3 188 -7 4 1009 416 186 208 7 chr12 55704250 55704353 -65553177 + B1_Mus1 SINE Alu 2 117 0 4 1009 684 237 126 25 chr12 55704832 55705030 -65552500 + MTEa LTR MaLR 73 299 -80 4 1009 216 0 0 0 chr12 55705030 55705054 -65552476 + (G)n Simple_repeat Simple_repeat 1 24 0 4 1009 684 237 126 25 chr12 55705054 55705132 -65552398 + MTEa LTR MaLR 300 376 -3 4 126 4270 31 0 0 chr12 55705143 55705625 -65551905 + LTRIS_Mm LTR ERV1 1 482 0 4 1010 1132 71 0 0 chr12 55705779 55705920 -65551610 + B1_Mus2 SINE Alu 1 141 -6 4 1010 579 62 0 0 chr12 55705920 55706000 -65551530 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 4 1010 22 56 0 0 chr12 55706111 55706147 -65551383 + AT_rich Low_complexity Low_complexity 1 36 0 4 1010 180 0 0 0 chr12 55706235 55706255 -65551275 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1010 1368 82 38 0 chr12 55706776 55706960 -65550570 - B2_Mm2 SINE B2 -4 191 1 4 1010 1230 47 0 0 chr12 55707897 55708045 -65549485 + B1_Mus1 SINE Alu 1 148 0 4 1010 213 39 0 0 chr12 55708052 55708078 -65549452 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 4 1010 777 130 145 0 chr12 55708220 55708351 -65549179 + B1_Mur4 SINE Alu 1 150 0 4 1010 459 0 0 0 chr12 55709583 55709634 -65547896 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 4 1010 714 145 89 0 chr12 55709636 55709760 -65547770 - B1_Mur3 SINE Alu -13 136 2 4 1010 250 47 45 23 chr12 55710806 55710850 -65546680 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1010 3494 30 2 0 chr12 55711135 55711530 -65546000 - MTA_Mm LTR MaLR 0 396 1 4 1010 1181 93 5 11 chr12 55711530 55711715 -65545815 + B2_Mm2 SINE B2 12 195 0 4 1010 3585 229 83 65 chr12 55712024 55713462 -65544068 + RMER1A Other Other 1 870 -160 4 1010 444 19 0 0 chr12 55713462 55713515 -65544015 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1010 3585 200 94 99 chr12 55713515 55713637 -65543893 + RMER1A Other Other 871 1024 -6 4 1010 421 228 11 0 chr12 55713762 55713854 -65543676 - PB1D10 SINE Alu -17 100 8 4 1010 1874 194 58 15 chr12 55715115 55715513 -65542017 + MTD LTR MaLR 2 416 -3 4 1010 231 36 0 0 chr12 55715600 55715628 -65541902 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1010 180 163 0 0 chr12 55715670 55715713 -65541817 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 4 1010 218 218 36 0 chr12 55715761 55715816 -65541714 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 4 1010 479 275 21 14 chr12 55715884 55716024 -65541506 - ORR1E LTR MaLR 0 370 230 4 1010 282 95 0 0 chr12 55716032 55716074 -65541456 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1010 474 33 0 0 chr12 55716075 55716135 -65541395 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1010 708 262 12 0 chr12 55716139 55716307 -65541223 - ORR1E LTR MaLR -183 176 7 4 1010 1877 147 67 40 chr12 55716332 55716708 -65540822 + ORR1B1 LTR MaLR 1 386 -8 4 1010 552 271 70 19 chr12 55716725 55716883 -65540647 - B4A SINE B4 -68 224 59 4 1010 327 299 9 36 chr12 55717092 55717203 -65540327 - PB1D10 SINE Alu -9 108 1 4 1010 233 128 26 0 chr12 55717278 55717317 -65540213 - Helitron3Na_Mam RC Helitron -41 445 406 4 1010 369 280 0 0 chr12 55717656 55717749 -65539781 - B1F1 SINE Alu -6 143 51 4 1010 258 204 0 36 chr12 55717761 55717817 -65539713 + ID4 SINE ID 2 55 -28 4 1010 1966 113 27 152 chr12 55718018 55718458 -65539072 + ORR1B1 LTR MaLR 2 386 -8 4 1010 261 0 0 0 chr12 55719983 55720012 -65537518 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1010 31 58 0 0 chr12 55720527 55720579 -65536951 + AT_rich Low_complexity Low_complexity 1 52 0 4 1010 839 171 7 7 chr12 55720834 55720981 -65536549 + B1_Mur1 SINE Alu 3 149 0 4 1010 452 290 37 27 chr12 55722463 55722597 -65534933 - Lx8 LINE L1 0 7473 7337 4 1010 297 51 0 0 chr12 55722597 55722636 -65534894 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1010 452 290 37 27 chr12 55722636 55722689 -65534841 - Lx8 LINE L1 -137 7336 7284 4 1010 180 0 0 0 chr12 55722894 55722914 -65534616 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 4 1010 319 167 61 0 chr12 55723014 55723080 -65534450 - RMER1B Other Other -299 767 698 4 1010 751 182 296 34 chr12 55723093 55723228 -65534302 + RMER1A Other Other 730 895 -135 4 1010 180 0 0 0 chr12 55723228 55723248 -65534282 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1010 751 182 296 34 chr12 55723248 55723345 -65534185 + RMER1A Other Other 896 1022 -8 4 1010 556 220 51 0 chr12 55723351 55723469 -65534061 + B1_Mus1 SINE Alu 4 127 -21 4 1010 408 40 0 0 chr12 55724239 55724289 -65533241 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 4 1010 1378 74 6 0 chr12 55724290 55724465 -65533065 + B2_Mm1a SINE B2 2 177 -16 4 1010 741 23 0 0 chr12 55724465 55724552 -65532978 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 4 1010 678 250 110 0 chr12 55724567 55724767 -65532763 + L1MA4 LINE L1 5384 5605 -578 4 1010 664 229 138 20 chr12 55724767 55724963 -65532567 + B4A SINE B4 6 224 -68 4 1010 426 257 0 10 chr12 55724990 55725092 -65532438 + B3A SINE B2 1 101 -97 4 1010 254 227 40 13 chr12 55725092 55725168 -65532362 - RMER5 LTR ERV1 -128 406 329 4 1010 662 215 57 78 chr12 55725161 55725353 -65532177 + B3A SINE B2 5 192 -6 4 1010 1150 95 0 0 chr12 55725369 55725517 -65532013 + B1_Mus1 SINE Alu 1 148 0 4 1010 504 245 6 89 chr12 55725523 55725628 -65531902 - RMER5 LTR ERV1 -174 360 263 4 1010 1381 87 38 0 chr12 55725628 55725812 -65531718 - B2_Mm2 SINE B2 -3 192 2 4 1010 504 245 6 89 chr12 55725812 55725863 -65531667 - RMER5 LTR ERV1 -272 262 217 4 1010 2726 91 79 35 chr12 55725863 55726318 -65531212 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1010 12027 38 20 28 chr12 55726319 55727799 -65529731 + IAPEz-int LTR ERVK 9 1477 -5004 4 1010 1871 98 0 0 chr12 55727800 55728046 -65529484 + IAPEz-int LTR ERVK 2252 2497 -5183 4 1010 953 80 24 0 chr12 55728041 55728166 -65529364 + IAPEz-int LTR ERVK 4783 4910 -2770 4 1010 26991 12 2 0 chr12 55728166 55731116 -65526414 + IAPEz-int LTR ERVK 3525 6481 0 4 1010 2719 89 79 37 chr12 55731116 55731572 -65525958 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1010 662 206 77 63 chr12 55731572 55731779 -65525751 - RMER5 LTR ERV1 -312 222 13 4 1010 1292 27 0 0 chr12 55732098 55732246 -65525284 - B1_Mus1 SINE Alu 0 148 1 4 1010 628 221 92 0 chr12 55732490 55732621 -65524909 - B1_Mur1 SINE Alu -6 143 1 4 1010 535 231 49 56 chr12 55732838 55732980 -65524550 + B1_Mur1 SINE Alu 2 142 -7 4 1010 694 298 62 36 chr12 55733180 55733523 -65524007 + L1MA4 LINE L1 5592 5946 -345 4 1010 258 32 0 0 chr12 55733523 55733554 -65523976 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1010 552 317 72 43 chr12 55733554 55733586 -65523944 + L1MA4 LINE L1 5947 5978 -313 4 1010 969 53 15 0 chr12 55733717 55733848 -65523682 + B1_Mm SINE Alu 7 139 -8 4 1010 690 201 156 11 chr12 55733872 55734058 -65523472 + B3 SINE B2 4 216 0 4 1010 514 270 162 58 chr12 55734093 55734333 -65523197 - MLT1E1A LTR MaLR -76 604 340 4 1010 335 303 30 0 chr12 55734335 55734467 -65523063 + (TCTG)n Simple_repeat Simple_repeat 3 138 0 4 1010 221 163 20 0 chr12 55734471 55734520 -65523010 + CT-rich Low_complexity Low_complexity 17 66 0 4 1010 381 176 78 113 chr12 55734854 55734969 -65522561 - B1F SINE Alu -37 112 2 4 1010 417 131 125 45 chr12 55735313 55735425 -65522105 - RLTR15 LTR ERVK -238 121 1 4 1010 399 231 13 177 chr12 55735470 55735558 -65521972 - ID_B1 SINE B4 -6 218 140 4 1010 899 243 23 19 chr12 55735558 55735772 -65521758 - B3 SINE B2 0 216 2 4 1010 399 231 13 177 chr12 55735772 55735841 -65521689 - ID_B1 SINE B4 -85 139 87 4 1010 293 284 12 47 chr12 55736006 55736091 -65521439 - HERVL40-int LTR ERVL -24 5506 5425 5 1010 824 134 22 29 chr12 55736091 55736229 -65521301 + B1_Mur4 SINE Alu 1 137 -13 5 1010 1452 188 62 3 chr12 55736307 55736612 -65520918 - MTD LTR MaLR 0 419 97 5 1010 221 0 0 33 chr12 55736637 55736667 -65520863 + (TAA)n Simple_repeat Simple_repeat 1 29 0 5 1010 427 143 12 0 chr12 55736737 55736821 -65520709 + L1Md_A LINE L1 6498 6582 0 5 1010 216 0 0 0 chr12 55737133 55737157 -65520373 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1010 1444 147 52 123 chr12 55737158 55737226 -65520304 - RMER10A LTR ERVL -22 420 357 5 1010 1235 41 0 0 chr12 55737226 55737373 -65520157 + B1_Mus2 SINE Alu 1 147 0 5 1010 1444 147 52 123 chr12 55737373 55737529 -65520001 - RMER10A LTR ERVL -86 356 218 5 1010 213 39 0 0 chr12 55737529 55737555 -65519975 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1010 1444 147 52 123 chr12 55737555 55737734 -65519796 - RMER10A LTR ERVL -225 217 45 5 1010 3871 168 53 97 chr12 55738898 55739203 -65518327 + Lx6 LINE L1 6492 6739 -721 5 1010 1061 131 6 0 chr12 55739203 55739379 -65518151 + (GAA)n Simple_repeat Simple_repeat 1 177 0 5 1010 3871 168 53 97 chr12 55739379 55739898 -65517632 + Lx6 LINE L1 6740 7280 -180 5 1010 288 0 0 0 chr12 55739901 55739933 -65517597 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1010 360 0 0 0 chr12 55739933 55739973 -65517557 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 5 1010 2646 52 0 0 chr12 55740523 55740847 -65516683 + L1Md_T LINE L1 6259 6582 0 5 1010 1289 72 71 6 chr12 55740986 55741168 -65516362 + B2_Mm2 SINE B2 2 195 0 5 1010 1154 75 0 7 chr12 55741629 55741777 -65515753 + B1_Mus1 SINE Alu 2 148 0 5 1010 516 261 37 15 chr12 55741893 55742029 -65515501 - RSINE1 SINE B4 -23 142 4 5 1010 520 208 79 16 chr12 55742030 55742157 -65515373 - ID_B1 SINE B4 0 224 90 5 1010 312 303 47 127 chr12 55742674 55742753 -65514777 - HERVL40-int LTR ERVL -2160 3370 3289 5 1010 1419 77 0 6 chr12 55742753 55742935 -65514595 + B2_Mm2 SINE B2 1 181 -14 5 1010 312 303 47 127 chr12 55742935 55743067 -65514463 - HERVL40-int LTR ERVL -2242 3288 3176 5 1010 2007 151 36 14 chr12 55743142 55743499 -65514031 + MTC LTR MaLR 55 419 -2 5 1010 1703 186 87 6 chr12 55743633 55743989 -65513541 + ORR1B1 LTR MaLR 1 385 -9 5 1010 25 31 0 0 chr12 55744154 55744186 -65513344 + AT_rich Low_complexity Low_complexity 1 32 0 5 1010 340 301 58 29 chr12 55744205 55744342 -65513188 - HERVL40-int LTR ERVL -4292 1238 1098 5 1010 506 280 132 90 chr12 55744724 55745156 -65512374 - LTR40b LTR ERVL -5 457 8 5 1010 743 155 65 9 chr12 55745633 55745811 -65511719 + B3 SINE B2 1 181 -14 5 1010 842 133 43 43 chr12 55745839 55745980 -65511550 + B1_Mur3 SINE Alu 2 142 -7 5 1010 862 115 34 2 chr12 55746023 55746202 -65511328 + B2_Mm2 SINE B2 1 198 0 5 1010 1014 168 108 5 chr12 55747845 55748031 -65509499 + B3 SINE B2 1 205 -11 5 1010 507 244 22 30 chr12 55748180 55748315 -65509215 - B4A SINE B4 -153 139 6 5 1010 405 0 0 0 chr12 55748323 55748368 -65509162 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1010 243 0 0 0 chr12 55748667 55748694 -65508836 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1010 600 64 42 21 chr12 55748697 55748793 -65508737 - B1_Mur4 SINE Alu -17 133 36 5 1010 293 184 75 50 chr12 55749188 55749268 -65508262 - ID4_ SINE ID 0 83 2 5 1010 672 209 36 7 chr12 55749585 55749725 -65507805 + B1_Mus2 SINE Alu 2 145 -2 5 1010 718 169 0 14 chr12 55749735 55749873 -65507657 + B1_Mus2 SINE Alu 10 145 -2 5 1010 417 198 23 11 chr12 55749897 55749984 -65507546 + B1_Mur2 SINE Alu 42 129 -20 5 1010 424 223 250 0 chr12 55750004 55750116 -65507414 - B3A SINE B2 -58 140 1 5 1010 321 26 0 0 chr12 55750141 55750179 -65507351 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1010 342 0 0 0 chr12 55750179 55750216 -65507314 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1010 189 0 0 0 chr12 55750220 55750241 -65507289 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1010 358 283 78 26 chr12 55750308 55750424 -65507106 - RSINE1 SINE B4 -40 125 4 5 1010 466 246 66 24 chr12 55750915 55751048 -65506482 - ID_B1 SINE B4 -18 206 73 5 1010 218 115 95 32 chr12 55751167 55751230 -65506300 + (GTTTG)n Simple_repeat Simple_repeat 3 69 0 5 1010 246 258 76 0 chr12 55751250 55751316 -65506214 - PB1D7 SINE Alu -41 79 9 5 1010 271 288 128 8 chr12 55751612 55751745 -65505785 + B4 SINE B4 126 274 -18 5 1010 28 0 0 0 chr12 55752234 55752262 -65505268 + AT_rich Low_complexity Low_complexity 1 28 0 5 1010 801 182 35 7 chr12 55752497 55752641 -65504889 + B1_Mur2 SINE Alu 1 148 -1 5 1010 231 135 0 0 chr12 55753078 55753115 -65504415 - B1_Mus2 SINE Alu -34 113 77 5 1010 401 240 82 44 chr12 55753112 55753247 -65504283 - RSINE1 SINE B4 -9 156 17 5 1010 189 0 0 0 chr12 55753376 55753397 -65504133 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 5 1010 596 229 25 0 chr12 55753417 55753539 -65503991 - B3A SINE B2 -73 125 1 5 1010 1234 41 0 7 chr12 55753978 55754126 -65503404 - B1_Mus2 SINE Alu 0 147 1 5 1010 614 197 82 22 chr12 55754338 55754473 -65503057 + B1_Mus1 SINE Alu 6 148 0 5 1010 535 223 75 23 chr12 55754486 55754619 -65502911 + B1_Mm SINE Alu 3 142 -5 5 1010 1310 86 37 11 chr12 55754836 55755024 -65502506 - B2_Mm2 SINE B2 -1 194 2 5 1010 535 231 7 50 chr12 55755385 55755526 -65502004 - ID_B1 SINE B4 -6 218 84 5 1010 765 188 14 0 chr12 55755597 55755735 -65501795 - B1_Mur4 SINE Alu -9 141 2 5 1010 397 266 22 52 chr12 55755929 55756064 -65501466 - B1F SINE Alu -18 131 1 5 1010 440 94 0 0 chr12 55756140 55756204 -65501326 + B1_Mus2 SINE Alu 75 138 -9 5 1010 254 29 29 0 chr12 55758145 55758180 -65499350 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1010 761 253 98 18 chr12 55758601 55758885 -65498645 - MTD LTR MaLR -68 351 13 5 1010 410 248 0 10 chr12 55758910 55759012 -65498518 - B1F SINE Alu -47 102 2 5 1010 1277 257 91 102 chr12 55759054 55759119 -65498411 + Lx8 LINE L1 6432 6474 -999 5 1010 495 221 59 37 chr12 55759119 55759255 -65498275 - B1_Mus1 SINE Alu -9 139 1 5 1010 1277 257 91 102 chr12 55759255 55759649 -65497881 + Lx8 LINE L1 6475 6886 -587 5 1010 937 47 16 0 chr12 55759662 55759790 -65497740 - B1_Mus1 SINE Alu 0 148 19 5 1010 680 227 84 0 chr12 55759794 55759948 -65497582 + Lx8 LINE L1 6896 7062 -411 5 1010 925 92 7 7 chr12 55760034 55760177 -65497353 + (TCTCCC)n Simple_repeat Simple_repeat 1 143 0 5 1010 226 275 66 44 chr12 55760967 55761104 -65496426 - B1F SINE Alu -9 140 1 5 1010 400 239 52 17 chr12 55761154 55761269 -65496261 + PB1 SINE Alu 7 125 -2 5 1010 261 0 0 0 chr12 55761436 55761465 -65496065 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1010 674 253 44 0 chr12 55761501 55761659 -65495871 - B3 SINE B2 -51 165 1 5 1010 885 214 51 20 chr12 55761751 55761947 -65495583 + B3 SINE B2 5 206 -10 5 1010 292 124 339 9 chr12 55762260 55762372 -65495158 - B2_Mm2 SINE B2 0 195 47 5 1010 1391 57 6 17 chr12 55762419 55762599 -65494931 - B2_Mm1t SINE B2 -14 179 2 5 1010 790 221 15 0 chr12 55763122 55763258 -65494272 + B1_Mur1 SINE Alu 3 140 -9 5 1010 3783 145 46 42 chr12 55764032 55764744 -65492786 - RLTR19B LTR ERVK 0 715 1 5 1010 400 240 62 163 chr12 55764796 55765005 -65492525 + B3A SINE B2 5 192 -6 5 1010 368 234 128 0 chr12 55765356 55765450 -65492080 + PB1D9 SINE Alu 5 110 -10 5 1010 435 145 0 0 chr12 55765516 55765528 -65492002 + (A)n Simple_repeat Simple_repeat 1 12 0 5 1010 1232 27 7 0 chr12 55765528 55765675 -65491855 + B1_Mus1 SINE Alu 1 148 0 5 1010 435 145 0 0 chr12 55765675 55765709 -65491821 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1010 1033 128 0 16 chr12 55765709 55765891 -65491639 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 1010 435 145 0 0 chr12 55765891 55765926 -65491604 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1010 473 189 131 0 chr12 55765929 55766051 -65491479 + B1F SINE Alu 6 143 -6 5 1010 398 248 88 9 chr12 55766221 55766335 -65491195 - ID_B1 SINE B4 -9 215 93 5 1010 34 24 0 0 chr12 55766335 55766376 -65491154 + AT_rich Low_complexity Low_complexity 1 41 0 5 1010 385 219 37 0 chr12 55766380 55766462 -65491068 - B1F SINE Alu -19 130 46 5 1010 960 243 92 0 chr12 55766479 55766685 -65490845 + URR1B DNA MER1_type 1 225 0 5 1010 462 319 34 41 chr12 55766927 55767221 -65490309 + B4A SINE B4 1 292 0 5 1010 911 222 155 95 chr12 55767395 55767662 -65489868 - MTEb LTR MaLR -2 377 83 5 1010 754 117 81 0 chr12 55767662 55767773 -65489757 - 5S rRNA rRNA -1 120 1 5 1010 911 222 155 95 chr12 55767773 55767852 -65489678 - MTEb LTR MaLR -297 82 10 5 1010 253 220 0 0 chr12 55767852 55767902 -65489628 - MTEb-int LTR MaLR 0 1580 1531 5 1010 381 188 0 24 chr12 55767910 55767992 -65489538 + B4A SINE B4 2 81 -211 5 1010 564 254 0 8 chr12 55768023 55768146 -65489384 - B3 SINE B2 -6 210 89 5 1010 327 43 56 28 chr12 55768186 55768258 -65489272 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1010 893 133 179 0 chr12 55768262 55768435 -65489095 - MT2A LTR ERVL -231 302 99 5 1010 768 231 6 12 chr12 55768517 55768688 -65488842 - RLTR19B LTR ERVK 0 715 546 5 1010 1213 126 5 0 chr12 55768710 55768900 -65488630 - RLTR19C LTR ERVK -311 195 5 5 1010 623 82 31 0 chr12 55768938 55769035 -65488495 + (GTTTG)n Simple_repeat Simple_repeat 5 104 0 5 1010 477 130 0 5 chr12 55769035 55769122 -65488408 - B1_Mus2 SINE Alu -8 139 60 5 1010 2548 164 27 176 chr12 55769124 55769794 -65487736 + RMER1B Other Other 237 786 -280 5 1010 3833 106 63 125 chr12 55769810 55770467 -65487063 - RMER17A2 LTR ERVK 0 906 311 5 1010 1450 65 11 0 chr12 55770467 55770653 -65486877 + B2_Mm1t SINE B2 2 189 -4 6 1010 3833 106 63 125 chr12 55770653 55770882 -65486648 - RMER17A2 LTR ERVK -596 310 75 5 1010 1231 34 0 7 chr12 55770988 55771136 -65486394 + B1_Mus2 SINE Alu 1 147 0 6 1010 21 0 0 0 chr12 55771328 55771349 -65486181 + AT_rich Low_complexity Low_complexity 1 21 0 6 1010 198 0 0 0 chr12 55771459 55771481 -65486049 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 6 1010 546 193 80 27 chr12 55772651 55772763 -65484767 - B2_Mm2 SINE B2 -76 119 2 6 1010 1730 16 0 0 chr12 55772851 55773043 -65484487 + B2_Mm1a SINE B2 2 193 0 6 1010 1354 73 15 40 chr12 55773211 55773410 -65484120 - B2_Mm2 SINE B2 0 195 2 6 1010 324 103 0 0 chr12 55774024 55774082 -65483448 + (TCTG)n Simple_repeat Simple_repeat 1 58 0 6 1010 427 238 118 10 chr12 55774103 55774205 -65483325 - RSINE1 SINE B4 -48 117 5 6 1010 373 222 122 0 chr12 55775017 55775107 -65482423 - PB1D10 SINE Alu -8 109 9 6 1010 796 171 0 54 chr12 55775145 55775293 -65482237 + B1_Mur4 SINE Alu 5 144 -6 6 1010 572 250 7 33 chr12 55775398 55775551 -65481979 - B1_Mur1 SINE Alu 0 149 1 6 1010 2687 150 30 26 chr12 55775580 55775682 -65481848 - RLTR20B2 LTR ERVK 0 560 462 6 1010 338 0 24 0 chr12 55775682 55775724 -65481806 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1010 2687 150 30 26 chr12 55775724 55776161 -65481369 - RLTR20B2 LTR ERVK -99 461 20 6 1010 1316 66 10 47 chr12 55776227 55776419 -65481111 - B2_Mm2 SINE B2 -9 186 2 6 1010 855 223 117 0 chr12 55776460 55776648 -65480882 + B3 SINE B2 1 210 -6 6 1010 23 68 0 0 chr12 55776739 55776783 -65480747 + AT_rich Low_complexity Low_complexity 1 44 0 6 1010 597 258 8 0 chr12 55776832 55776964 -65480566 - ID_B1 SINE B4 -8 216 84 6 1010 841 204 68 19 chr12 55777186 55777391 -65480139 + B3 SINE B2 2 216 0 6 1010 2579 192 75 47 chr12 55777422 55778046 -65479484 + RLTR26 LTR ERVK 1 642 0 6 1010 373 252 34 67 chr12 55778056 55778175 -65479355 + PB1D10 SINE Alu 3 117 0 6 1010 384 296 42 80 chr12 55778076 55778176 -65479354 + MT2B LTR ERVL 72 163 -438 6 1010 650 245 50 0 chr12 55778176 55778315 -65479215 + B1_Mur1 SINE Alu 3 148 -1 6 1010 838 158 20 14 chr12 55778583 55778731 -65478799 - B1_Mur4 SINE Alu 0 150 2 6 1010 1233 48 0 0 chr12 55779031 55779177 -65478353 + B1_Mus2 SINE Alu 2 147 0 6 1010 1364 86 5 16 chr12 55779197 55779387 -65478143 + B2_Mm1a SINE B2 1 188 -5 6 1010 791 136 228 19 chr12 55779797 55779955 -65477575 + B2_Mm2 SINE B2 3 193 -2 6 1010 274 236 69 0 chr12 55780831 55780903 -65476627 + L1MC3 LINE L1 6744 6820 -1062 6 1010 21 36 0 0 chr12 55780904 55780932 -65476598 + AT_rich Low_complexity Low_complexity 1 28 0 6 1010 480 192 0 0 chr12 55781018 55781096 -65476434 - B3A SINE B2 -120 78 1 6 1010 294 309 0 0 chr12 55781197 55781265 -65476265 + L1MC3 LINE L1 7109 7176 -609 6 1010 324 186 0 0 chr12 55781275 55781334 -65476196 + PB1D7 SINE Alu 1 59 -61 6 1010 305 271 0 14 chr12 55781279 55781350 -65476180 + ID_B1 SINE B4 86 155 -69 6 1010 257 336 16 16 chr12 55781417 55781538 -65475992 + L1MC3 LINE L1 7365 7485 -300 6 1010 324 318 45 9 chr12 55781566 55781677 -65475853 + B1F SINE Alu 1 115 -34 6 1010 387 209 70 43 chr12 55781799 55781906 -65475624 + B4A SINE B4 120 230 -62 6 1010 393 286 167 36 chr12 55781906 55782044 -65475486 + RSINE1 SINE B4 2 157 -8 6 1010 204 40 0 0 chr12 55782061 55782086 -65475444 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6 1010 488 71 0 0 chr12 55782141 55782211 -65475319 + L1Md_F2 LINE L1 6501 6570 -12 6 1010 251 377 0 0 chr12 55784505 55784582 -65472948 + ID4_ SINE ID 1 77 -6 6 1010 472 267 88 26 chr12 55784594 55784821 -65472709 + L1MB5 LINE L1 5592 5832 -342 6 1010 1210 124 11 0 chr12 55784823 55785000 -65472530 + B2_Mm1t SINE B2 1 179 -14 6 1010 390 124 0 5 chr12 55785043 55785108 -65472422 + B2_Mm2 SINE B2 47 109 -107 6 1010 899 87 0 14 chr12 55785122 55785262 -65472268 + (GAAA)n Simple_repeat Simple_repeat 1 138 0 6 1010 420 257 32 96 chr12 55785376 55785501 -65472029 + B1_Mur2 SINE Alu 33 149 0 6 1010 264 337 11 23 chr12 55785503 55785591 -65471939 + ID_B1 SINE B4 78 164 -60 6 1010 337 272 74 46 chr12 55785512 55785620 -65471910 + PB1D10 SINE Alu 7 117 0 6 1010 222 37 0 0 chr12 55785626 55785653 -65471877 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1010 443 226 58 16 chr12 55785735 55785878 -65471652 + B1F SINE Alu 1 149 0 6 1010 253 356 0 0 chr12 55785880 55785953 -65471577 + ID4_ SINE ID 1 73 -10 6 1010 450 235 103 29 chr12 55785978 55786114 -65471416 + B1F1 SINE Alu 2 147 -2 6 1010 342 262 146 62 chr12 55786184 55786314 -65471216 + B1F2 SINE Alu 9 149 0 6 1010 1444 44 22 0 chr12 55786314 55786496 -65471034 + B2_Mm1a SINE B2 2 187 -6 6 1010 718 187 29 7 chr12 55786499 55786639 -65470891 + B1_Mur4 SINE Alu 1 143 -7 6 1010 270 167 19 0 chr12 55787093 55787147 -65470383 + Lx4A LINE L1 6999 7053 -5 6 1010 200 34 0 33 chr12 55787147 55787177 -65470353 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1010 694 240 31 30 chr12 55787410 55787581 -65469949 + ID_B1 SINE B4 58 229 -63 6 1010 593 221 22 59 chr12 55787599 55787734 -65469796 + RSINE1 SINE B4 36 165 0 6 1010 716 273 90 5 chr12 55787776 55787964 -65469566 - ID_B1 SINE B4 -20 204 1 6 1010 309 338 22 8 chr12 55788033 55788167 -65469363 + B1F SINE Alu 11 146 -3 6 1010 235 132 0 0 chr12 55788217 55788255 -65469275 - B3 SINE B2 -6 210 173 6 1010 1171 82 0 0 chr12 55788275 55788422 -65469108 - B1_Mus2 SINE Alu 0 147 1 6 1010 782 275 0 50 chr12 55788422 55788611 -65468919 - B3 SINE B2 -32 184 3 6 1010 1112 137 91 19 chr12 55788611 55788819 -65468711 + URR1B DNA MER1_type 1 223 -2 6 1010 533 267 87 53 chr12 55788895 55788966 -65468564 + ID_B1 SINE B4 8 219 -4 6 1010 917 134 8 0 chr12 55788966 55789100 -65468430 + B1_Mus1 SINE Alu 9 143 -5 6 1010 883 99 28 7 chr12 55789159 55789313 -65468217 - URR1B DNA MER1_type 0 225 78 6 1010 443 139 43 122 chr12 55789536 55789651 -65467879 + MT2B LTR ERVL 159 264 -337 6 1010 769 94 68 0 chr12 55789553 55789670 -65467860 + B1_Mur3 SINE Alu 11 135 -14 6 1010 284 183 58 97 chr12 55789696 55789799 -65467731 - Charlie24 DNA MER1_type -387 2063 1965 6 1010 1130 62 14 0 chr12 55789810 55789956 -65467574 + B1_Mus1 SINE Alu 1 148 0 6 1010 189 0 0 0 chr12 55789956 55789977 -65467553 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1010 375 284 79 35 chr12 55790317 55790612 -65466918 - Charlie10 DNA MER1_type -827 1930 1517 6 1010 453 321 128 48 chr12 55790673 55791088 -65466442 - Charlie11 DNA MER1_type -1112 1084 637 6 1010 798 175 34 40 chr12 55791286 55791320 -65466210 - B1_Mus1 SINE Alu 0 148 114 6 1010 1766 136 35 81 chr12 55791320 55791665 -65465865 - ORR1A4 LTR MaLR 0 329 1 6 1010 798 175 34 40 chr12 55791665 55791779 -65465751 - B1_Mus1 SINE Alu -35 113 1 6 1010 381 183 0 99 chr12 55791972 55791998 -65465532 + B4 SINE B4 70 86 -206 6 1010 447 134 134 0 chr12 55791998 55792080 -65465450 + PB1D9 SINE Alu 2 94 -26 6 1010 545 49 310 0 chr12 55792523 55792628 -65464902 + B1_Mur4 SINE Alu 13 150 0 6 1010 303 140 0 0 chr12 55792628 55792678 -65464852 + (A)n Simple_repeat Simple_repeat 1 50 0 6 1010 1322 153 9 9 chr12 55792678 55792889 -65464641 + B3 SINE B2 1 211 -5 6 1010 415 263 50 50 chr12 55793240 55793360 -65464170 + PB1 SINE Alu 1 120 -7 6 1010 1118 38 170 36 chr12 55793374 55793539 -65463991 + B2_Mm2 SINE B2 2 188 -7 6 1010 307 210 16 16 chr12 55793548 55793611 -65463919 + ID2 SINE ID 14 76 -7 6 1010 390 74 0 0 chr12 55793616 55793670 -65463860 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1010 241 272 24 47 chr12 55793986 55794071 -65463459 + ID4 SINE ID 1 83 0 6 1010 808 83 27 6 chr12 55794110 55794235 -65463295 + ORR1A2 LTR MaLR 1 173 -221 6 1010 215 93 0 23 chr12 55794288 55794332 -65463198 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1010 1630 60 50 14 chr12 55794333 55794552 -65462978 + ORR1A2 LTR MaLR 93 319 -8 6 1010 532 292 62 0 chr12 55794686 55794816 -65462714 - B1F2 SINE Alu 0 149 12 6 1010 803 271 20 5 chr12 55794840 55795040 -65462490 - B3 SINE B2 -10 206 4 6 1010 24 79 0 33 chr12 55795151 55795243 -65462287 + AT_rich Low_complexity Low_complexity 1 89 0 6 1010 213 296 141 0 chr12 55795301 55795372 -65462158 - ID4 SINE ID -1 82 2 6 1010 472 196 42 32 chr12 55795513 55795608 -65461922 + RSINE1 SINE B4 1 96 -69 6 1010 1215 28 14 7 chr12 55795645 55795791 -65461739 + B1_Mm SINE Alu 1 147 0 6 1010 225 0 0 0 chr12 55795792 55795817 -65461713 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1010 393 259 83 9 chr12 55795874 55795983 -65461547 - PB1D10 SINE Alu 0 117 1 6 1010 1147 55 14 0 chr12 55796028 55796173 -65461357 + B1_Mus2 SINE Alu 1 147 0 6 1010 297 75 0 0 chr12 55796173 55796213 -65461317 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 6 1010 257 226 177 31 chr12 55796407 55796503 -65461027 - MIRb SINE MIR -113 155 46 6 1010 406 271 136 24 chr12 55797054 55797179 -65460351 - B1F1 SINE Alu -1 148 10 6 1010 366 296 79 36 chr12 55797179 55797194 -65460336 - ID_B1 SINE B4 -1 223 78 6 1010 1487 18 0 0 chr12 55797768 55797933 -65459597 + U1 snRNA snRNA 1 165 0 7 1010 1581 32 32 0 chr12 55798013 55798199 -65459331 - B2_Mm1a SINE B2 0 193 2 7 1010 249 87 304 0 chr12 55798294 55798340 -65459190 - B1_Mm SINE Alu -4 143 84 7 1010 434 243 227 34 chr12 55798420 55798677 -65458853 + MTD LTR MaLR 66 383 -36 7 1010 774 248 158 58 chr12 55798788 55799117 -65458413 + Lx8 LINE L1 6750 7111 -362 7 1010 478 215 112 0 chr12 55799118 55799225 -65458305 + B3A SINE B2 1 119 -79 7 1010 230 273 0 15 chr12 55799307 55799374 -65458156 + (CATA)n Simple_repeat Simple_repeat 4 69 0 7 1010 429 191 24 0 chr12 55799394 55799491 -65458039 - B1_Mur2 SINE Alu -7 143 42 7 1010 505 240 97 102 chr12 55799509 55799652 -65457878 - B3A SINE B2 -9 189 38 7 1010 1297 70 10 92 chr12 55799652 55799858 -65457672 - B2_Mm2 SINE B2 -6 189 1 7 1010 505 240 97 102 chr12 55799858 55799900 -65457630 - B3A SINE B2 -161 37 5 7 1010 818 168 0 0 chr12 55799936 55800067 -65457463 + B1_Mus1 SINE Alu 7 137 -11 7 1010 274 246 53 0 chr12 55800101 55800158 -65457372 + B1_Mus1 SINE Alu 3 62 -86 7 1010 298 263 0 38 chr12 55800275 55800354 -65457176 + RSINE1 SINE B4 3 78 -87 7 1010 241 185 15 15 chr12 55800378 55800444 -65457086 + CT-rich Low_complexity Low_complexity 2 67 0 7 1010 180 0 0 0 chr12 55800854 55800874 -65456656 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 7 1010 1290 201 69 12 chr12 55800900 55801147 -65456383 + RLTR21 LTR ERVK 1 261 -1311 7 1010 853 126 15 7 chr12 55801147 55801283 -65456247 + B1_Mus1 SINE Alu 2 138 -10 7 1010 2666 92 53 114 chr12 55801263 55801493 -65456037 + RLTR21 LTR ERVK 246 465 -1107 7 1010 1238 48 0 0 chr12 55801493 55801640 -65455890 - B1_Mus2 SINE Alu 0 147 1 7 1010 2666 92 53 114 chr12 55801640 55801742 -65455788 + RLTR21 LTR ERVK 466 571 -1001 7 1010 1362 91 5 16 chr12 55801742 55801932 -65455598 - B2_Mm2 SINE B2 -6 189 2 7 1010 1467 49 16 16 chr12 55801938 55802125 -65455405 - B2_Mm2 SINE B2 -8 187 1 7 1010 2666 92 53 114 chr12 55802125 55802274 -65455256 + RLTR21 LTR ERVK 572 705 -867 7 1010 3706 166 31 143 chr12 55802718 55803209 -65454321 + RLTR21 LTR ERVK 694 1127 -445 7 1010 354 91 0 0 chr12 55803209 55803264 -65454266 + (TATG)n Simple_repeat Simple_repeat 4 58 0 7 1010 3706 166 31 143 chr12 55803264 55803434 -65454096 + RLTR21 LTR ERVK 1128 1247 -325 7 1010 315 113 0 0 chr12 55803434 55803487 -65454043 + (TATG)n Simple_repeat Simple_repeat 2 54 0 7 1010 3706 166 31 143 chr12 55803487 55803814 -65453716 + RLTR21 LTR ERVK 1248 1572 0 7 1010 212 143 0 0 chr12 55804142 55804177 -65453353 + (C)n Simple_repeat Simple_repeat 1 35 0 7 1010 254 185 145 24 chr12 55804214 55804297 -65453233 + MIRb SINE MIR 99 191 -77 7 1010 222 219 95 14 chr12 55804267 55804341 -65453189 + MIRc SINE MIR 168 247 -21 7 1010 1225 28 7 0 chr12 55804421 55804566 -65452964 + B1_Mus2 SINE Alu 2 147 0 7 1010 388 217 71 120 chr12 55804655 55804880 -65452650 - B3 SINE B2 -1 215 2 7 1010 315 248 113 33 chr12 55804898 55805048 -65452482 - RSINE1 SINE B4 -1 164 3 7 1010 298 252 101 58 chr12 55805253 55805392 -65452138 + ID_B1 SINE B4 50 194 -30 7 1010 451 153 141 10 chr12 55805300 55805399 -65452131 + B1F2 SINE Alu 12 123 -26 7 1010 321 190 45 99 chr12 55805399 55805411 -65452119 + MT2B LTR ERVL 176 280 -321 7 1010 459 313 20 13 chr12 55805438 55805590 -65451940 + RSINE1 SINE B4 5 157 -8 7 1010 2207 170 57 60 chr12 55805967 55806480 -65451050 - RLTR28 LTR ERVL 0 524 14 7 1010 290 298 23 87 chr12 55806627 55806800 -65450730 + B3A SINE B2 10 171 -27 7 1010 825 53 0 58 chr12 55806832 55806953 -65450577 - BC1_Mm scRNA scRNA -38 114 1 7 1010 1287 34 0 0 chr12 55806988 55807136 -65450394 - B1_Mus1 SINE Alu 0 148 1 7 1010 925 188 162 71 chr12 55807139 55807448 -65450082 + RMER15 LTR ERVL 50 386 -189 7 1010 1182 62 0 0 chr12 55807675 55807821 -65449709 + B1_Mus2 SINE Alu 2 147 0 7 1010 1032 253 200 39 chr12 55807863 55807963 -65449567 + RMER2 LTR ERV1 1 104 -463 7 1010 459 0 0 0 chr12 55807963 55808014 -65449516 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1010 1032 253 200 39 chr12 55808014 55808378 -65449152 + RMER2 LTR ERV1 105 539 -28 7 1010 447 204 0 11 chr12 55808394 55808488 -65449042 - RLTR15 LTR ERVK -266 93 1 7 1010 897 204 5 75 chr12 55808488 55808697 -65448833 + RMER15 LTR ERVL 382 575 0 7 1010 180 77 0 0 chr12 55809181 55809207 -65448323 + (G)n Simple_repeat Simple_repeat 1 26 0 7 1010 1326 179 206 26 chr12 55809310 55809655 -65447875 + MTB_Mm LTR MaLR 1 407 0 7 1010 4087 92 22 34 chr12 55809677 55810273 -65447257 - RLTR1D LTR ERV1 -16 589 1 7 1010 1176 48 7 0 chr12 55810305 55810451 -65447079 + B1_Mus1 SINE Alu 1 147 -1 7 1010 22 0 0 0 chr12 55810451 55810473 -65447057 + AT_rich Low_complexity Low_complexity 1 22 0 7 1010 279 122 0 0 chr12 55810477 55810526 -65447004 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 7 1010 266 155 35 0 chr12 55811002 55811060 -65446470 + GA-rich Low_complexity Low_complexity 3 62 0 7 1010 1506 12 0 0 chr12 55811294 55811459 -65446071 + U1 snRNA snRNA 1 165 0 7 1010 1146 174 34 15 chr12 55812319 55812523 -65445007 + B3 SINE B2 3 210 -6 7 1010 303 93 0 0 chr12 55812556 55812599 -65444931 + (TGG)n Simple_repeat Simple_repeat 1 43 0 7 1010 564 170 123 0 chr12 55812607 55812713 -65444817 - B1_Mus1 SINE Alu -1 147 29 7 1010 725 106 9 0 chr12 55812716 55812829 -65444701 + (GA)n Simple_repeat Simple_repeat 1 114 0 7 1010 352 185 32 2 chr12 55812873 55812953 -65444577 - B3 SINE B2 -113 85 4 7 1010 486 0 0 0 chr12 55813059 55813113 -65444417 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1010 186 267 55 82 chr12 55813113 55813218 -65444312 - L3 LINE CR1 -2230 2259 2158 7 1010 222 185 185 0 chr12 55813348 55813402 -65444128 - ID2 SINE ID -9 74 11 7 1010 597 178 0 79 chr12 55813441 55813581 -65443949 - B1_Mur2 SINE Alu -8 141 13 7 1010 1251 34 0 0 chr12 55813731 55813878 -65443652 - B1_Mus2 SINE Alu 0 147 1 7 1010 1246 67 60 22 chr12 55814163 55814345 -65443185 - B2_Mm2 SINE B2 -6 189 1 7 1010 342 0 0 0 chr12 55814347 55814385 -65443145 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 7 1010 338 223 17 112 chr12 55814399 55814514 -65443016 - B3 SINE B2 -11 205 102 7 1010 636 177 95 24 chr12 55814514 55814682 -65442848 + MTC LTR MaLR 1 180 -241 7 1010 299 214 20 152 chr12 55814787 55814886 -65442644 + ID_B1 SINE B4 139 224 0 7 1010 1498 12 0 0 chr12 55815204 55815368 -65442162 + U1 snRNA snRNA 1 164 -1 7 1010 343 254 80 56 chr12 55815491 55815616 -65441914 + MTC LTR MaLR 294 421 0 7 1010 621 214 13 76 chr12 55815654 55815811 -65441719 - B3 SINE B2 -69 147 1 7 1010 327 177 0 0 chr12 55816250 55816312 -65441218 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 7 1010 349 129 145 0 chr12 55816315 55816377 -65441153 - B1_Mus2 SINE Alu -1 146 76 7 1010 272 315 10 42 chr12 55816316 55816410 -65441120 - B4 SINE B4 -69 223 133 7 1010 589 55 0 0 chr12 55816410 55816483 -65441047 + RMER6A LTR ERVK 1 73 -388 7 1010 1301 69 26 36 chr12 55816494 55816689 -65440841 + B2_Mm2 SINE B2 2 194 -1 7 1010 1045 112 71 33 chr12 55816702 55816848 -65440682 + B2_Mm2 SINE B2 1 157 -38 7 1010 369 0 0 0 chr12 55816848 55816889 -65440641 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 7 1010 1045 112 71 33 chr12 55816889 55816926 -65440604 + B2_Mm2 SINE B2 158 190 -5 7 1010 1069 186 31 201 chr12 55816926 55817210 -65440320 + RMER6A LTR ERVK 168 405 -285 7 1010 228 35 0 0 chr12 55817210 55817239 -65440291 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1010 1090 212 91 111 chr12 55817239 55817681 -65439849 + RMER6A LTR ERVK 317 750 -6 7 1010 318 26 0 0 chr12 55818312 55818351 -65439179 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1010 216 0 0 0 chr12 55818353 55818377 -65439153 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1010 620 163 575 19 chr12 55818404 55818610 -65438920 - ORR1A4 LTR MaLR -8 321 1 7 1010 324 248 54 39 chr12 55818610 55818740 -65438790 + Lx8 LINE L1 6967 7098 -375 7 1010 1015 186 69 25 chr12 55818744 55818948 -65438582 + B3 SINE B2 1 213 -3 7 1010 363 98 0 0 chr12 55818967 55819028 -65438502 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 1010 285 329 47 0 chr12 55819040 55819125 -65438405 + B4A SINE B4 5 93 -199 7 1010 559 109 10 52 chr12 55819175 55819272 -65438258 - ORR1B2 LTR MaLR -8 359 267 7 1010 486 112 25 12 chr12 55819325 55819406 -65438124 - B2_Mm2 SINE B2 -4 191 110 7 1010 1173 96 90 0 chr12 55819441 55819619 -65437911 + B2_Mm2 SINE B2 2 195 0 7 1010 206 149 20 41 chr12 55819639 55819688 -65437842 + (TATG)n Simple_repeat Simple_repeat 3 50 0 7 1010 668 259 94 31 chr12 55819688 55819879 -65437651 - B3 SINE B2 -13 203 1 7 1010 1506 12 0 0 chr12 55820148 55820313 -65437217 - U1 snRNA snRNA 0 165 1 7 1010 400 288 34 0 chr12 55820764 55820882 -65436648 + ID_B1 SINE B4 102 223 -1 7 1010 728 111 8 0 chr12 55820885 55821011 -65436519 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 7 1010 425 162 0 0 chr12 55821013 55821081 -65436449 - BGLII_Mus LTR ERVK -354 68 1 7 1010 628 224 13 53 chr12 55821081 55821115 -65436415 + RLTR31_Mm LTR ERVK 325 357 -204 7 1010 411 21 0 0 chr12 55821115 55821163 -65436367 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 7 1010 956 124 15 0 chr12 55821163 55821300 -65436230 - B1_Mus1 SINE Alu -9 139 1 7 1010 628 224 13 53 chr12 55821300 55821412 -65436118 + RLTR31_Mm LTR ERVK 358 465 -96 7 1010 335 177 16 16 chr12 55821397 55821460 -65436070 + RLTR17 LTR ERVK 630 692 0 7 1010 960 126 38 0 chr12 55821525 55821684 -65435846 + B2_Mm1a SINE B2 3 167 -26 7 1010 279 322 19 70 chr12 55821764 55821921 -65435609 - RLTR18 LTR ERVK -333 283 135 7 1010 3554 33 28 14 chr12 55821941 55822371 -65435159 - RLTR10C LTR ERVK 0 436 1 7 1010 26261 26 2 16 chr12 55822371 55825416 -65432114 - MMERVK10C-int LTR ERVK 0 7581 4582 7 1010 1208 58 0 6 chr12 55825416 55825572 -65431958 + B2_Mm2 SINE B2 1 155 -40 7 1010 423 0 0 0 chr12 55825572 55825619 -65431911 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 7 1010 699 216 71 66 chr12 55825619 55825645 -65431885 + B3A SINE B2 162 184 -14 7 1010 17259 31 8 0 chr12 55825645 55827643 -65429887 - MMERVK10C-int LTR ERVK -3017 4564 2552 7 1010 404 117 6 58 chr12 55827649 55827777 -65429753 - MMERVK10C-int LTR ERVK -5634 1947 1721 7 1010 648 207 224 75 chr12 55827761 55828161 -65429369 - MMERVK10C-int LTR ERVK -4795 611 312 7 1010 877 161 4 177 chr12 55828248 55828519 -65429011 - MMERVK10C-int LTR ERVK -6629 952 729 8 1010 427 41 0 0 chr12 55828550 55828599 -65428931 - MMERVK10C-int LTR ERVK -7308 273 225 8 1010 245 244 0 0 chr12 55828599 55828644 -65428886 - RLTR27 LTR ERVK -34 275 231 8 1010 1508 44 0 6 chr12 55828644 55828825 -65428705 - MMERVK10C-int LTR ERVK -7401 180 1 8 1010 3497 29 37 19 chr12 55828825 55829253 -65428277 - RLTR10C LTR ERVK 0 436 1 8 1010 1029 110 0 14 chr12 55829278 55829425 -65428105 + B1_Mm SINE Alu 1 145 -2 8 1010 448 313 42 65 chr12 55829448 55829663 -65427867 - RLTR18 LTR ERVK -358 258 49 8 1010 302 117 106 9 chr12 55829748 55829824 -65427706 - B1_Mur4 SINE Alu -1 149 40 8 1010 754 122 7 7 chr12 55829876 55830016 -65427514 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 8 1010 400 288 34 0 chr12 55830019 55830137 -65427393 - ID_B1 SINE B4 -1 223 102 8 1010 1506 12 0 0 chr12 55830588 55830753 -65426777 + U1 snRNA snRNA 1 165 0 8 1010 668 259 94 31 chr12 55831022 55831213 -65426317 + B3 SINE B2 1 203 -13 8 1010 206 149 20 41 chr12 55831213 55831262 -65426268 + (CATA)n Simple_repeat Simple_repeat 3 50 0 8 1010 1173 96 90 0 chr12 55831282 55831460 -65426070 - B2_Mm2 SINE B2 0 195 2 8 1010 510 138 23 11 chr12 55831488 55831576 -65425954 + B2_Mm2 SINE B2 103 191 -4 8 1010 559 109 10 52 chr12 55831629 55831726 -65425804 + ORR1B2 LTR MaLR 267 359 -8 8 1010 285 329 47 0 chr12 55831776 55831861 -65425669 - B4A SINE B4 -199 93 5 8 1010 363 98 0 0 chr12 55831873 55831934 -65425596 + (TC)n Simple_repeat Simple_repeat 1 61 0 8 1010 1015 186 69 25 chr12 55831953 55832157 -65425373 - B3 SINE B2 -3 213 1 8 1010 306 264 54 39 chr12 55832161 55832291 -65425239 - Lx8 LINE L1 -375 7098 6967 8 1010 620 163 575 19 chr12 55832291 55832497 -65425033 + ORR1A4 LTR MaLR 1 321 -8 8 1010 216 0 0 0 chr12 55832524 55832548 -65424982 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1010 390 21 0 0 chr12 55832550 55832597 -65424933 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1010 1090 212 91 111 chr12 55833228 55833670 -65423860 - RMER6A LTR ERVK -6 750 317 8 1010 228 35 0 0 chr12 55833670 55833699 -65423831 + (TC)n Simple_repeat Simple_repeat 1 29 0 8 1010 1090 186 31 701 chr12 55833699 55833983 -65423547 - RMER6A LTR ERVK -285 405 168 8 1010 1045 112 71 33 chr12 55833983 55834020 -65423510 - B2_Mm2 SINE B2 -4 191 159 8 1010 369 0 0 0 chr12 55834020 55834061 -65423469 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 8 1010 1045 112 71 33 chr12 55834061 55834207 -65423323 - B2_Mm2 SINE B2 -37 158 2 8 1010 1314 64 26 36 chr12 55834220 55834415 -65423115 - B2_Mm2 SINE B2 -1 194 2 8 1010 589 55 0 0 chr12 55834426 55834499 -65423031 - RMER6B LTR ERVK -388 73 1 8 1010 272 315 10 42 chr12 55834499 55834593 -65422937 + B4 SINE B4 133 223 -69 8 1010 349 129 145 0 chr12 55834532 55834594 -65422936 + B1_Mus2 SINE Alu 76 146 -1 8 1010 327 177 0 0 chr12 55834597 55834659 -65422871 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 8 1010 621 214 13 76 chr12 55835098 55835255 -65422275 + B3 SINE B2 1 147 -69 8 1010 343 254 80 56 chr12 55835293 55835418 -65422112 - MTC LTR MaLR 0 421 294 8 1010 1476 18 0 0 chr12 55835541 55835705 -65421825 - U1 snRNA snRNA -1 164 1 8 1010 299 214 20 152 chr12 55836023 55836122 -65421408 - ID_B1 SINE B4 0 224 139 8 1010 636 177 95 24 chr12 55836227 55836395 -65421135 - MTC LTR MaLR -241 180 1 8 1010 338 223 17 112 chr12 55836395 55836510 -65421020 + B3 SINE B2 102 205 -11 8 1010 342 0 0 0 chr12 55836524 55836562 -65420968 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 8 126 1246 67 60 22 chr12 55836564 55836746 -65420784 + B2_Mm2 SINE B2 1 189 -6 8 1011 1251 34 0 0 chr12 55837031 55837178 -65420352 + B1_Mus2 SINE Alu 1 147 0 8 1011 597 178 0 79 chr12 55837328 55837468 -65420062 + B1_Mur2 SINE Alu 13 141 -8 8 1011 222 185 185 0 chr12 55837507 55837561 -65419969 + ID2 SINE ID 11 74 -9 8 1011 186 267 55 82 chr12 55837691 55837796 -65419734 + L3 LINE CR1 2153 2254 -2235 8 1011 486 0 0 0 chr12 55837796 55837850 -65419680 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1011 352 185 32 2 chr12 55837954 55838034 -65419496 + B3 SINE B2 4 85 -113 8 1011 689 110 9 0 chr12 55838078 55838187 -65419343 + (TC)n Simple_repeat Simple_repeat 1 110 0 8 1011 572 160 123 0 chr12 55838190 55838296 -65419234 + B1_Mus1 SINE Alu 29 147 -1 8 1011 303 93 0 0 chr12 55838304 55838347 -65419183 + (CCA)n Simple_repeat Simple_repeat 1 43 0 8 1011 1146 174 34 15 chr12 55838380 55838584 -65418946 - B3 SINE B2 -6 210 3 8 1011 1506 12 0 0 chr12 55839444 55839609 -65417921 - U1 snRNA snRNA 0 165 1 8 1011 287 138 35 0 chr12 55839843 55839901 -65417629 + CT-rich Low_complexity Low_complexity 3 62 0 8 1011 279 122 0 0 chr12 55840377 55840426 -65417104 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 8 1011 22 0 0 0 chr12 55840430 55840452 -65417078 + AT_rich Low_complexity Low_complexity 1 22 0 8 1011 1176 48 7 0 chr12 55840452 55840598 -65416932 - B1_Mus1 SINE Alu -1 147 1 8 1011 4087 92 22 34 chr12 55840630 55841226 -65416304 + RLTR1D LTR ERV1 1 589 -16 8 1011 1326 179 206 26 chr12 55841248 55841593 -65415937 - MTB_Mm LTR MaLR 0 407 1 8 1011 180 77 0 0 chr12 55841696 55841722 -65415808 + (C)n Simple_repeat Simple_repeat 1 26 0 8 1011 897 204 5 75 chr12 55842206 55842415 -65415115 - RMER15 LTR ERVL 0 575 382 8 1011 447 204 0 11 chr12 55842415 55842509 -65415021 + RLTR15 LTR ERVK 1 93 -266 8 1011 1032 253 200 39 chr12 55842525 55842889 -65414641 - RMER2 LTR ERV1 -27 540 116 8 1011 459 0 0 0 chr12 55842889 55842940 -65414590 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1011 1032 253 200 39 chr12 55842940 55843040 -65414490 - RMER2 LTR ERV1 -452 115 3 8 1011 1182 62 0 0 chr12 55843082 55843228 -65414302 - B1_Mus2 SINE Alu 0 147 2 8 1011 925 188 162 71 chr12 55843455 55843764 -65413766 - RMER15 LTR ERVL -189 386 50 8 1011 1287 34 0 0 chr12 55843767 55843915 -65413615 + B1_Mus1 SINE Alu 1 148 0 8 1011 825 53 0 58 chr12 55843951 55844072 -65413458 + BC1_Mm scRNA scRNA 1 114 -38 8 1011 290 298 23 87 chr12 55844104 55844277 -65413253 - B3A SINE B2 -27 171 10 8 1011 2162 172 59 57 chr12 55844424 55844934 -65412596 + RLTR28 LTR ERVL 14 524 0 8 1011 447 327 20 13 chr12 55845333 55845485 -65412045 - RSINE1 SINE B4 -8 157 5 8 1011 459 143 141 10 chr12 55845524 55845623 -65411907 - B1F2 SINE Alu -26 123 12 8 1011 298 252 101 58 chr12 55845531 55845670 -65411860 - ID_B1 SINE B4 -30 194 50 8 1011 315 248 113 33 chr12 55845874 55846024 -65411506 + RSINE1 SINE B4 3 164 -1 8 1011 462 245 71 75 chr12 55846042 55846254 -65411276 + B3 SINE B2 2 212 -4 8 1011 208 193 77 88 chr12 55846370 55846461 -65411069 - MIRc SINE MIR -11 257 168 8 1011 250 219 132 12 chr12 55846431 55846514 -65411016 - MIRb SINE MIR -77 191 99 8 1011 202 121 0 29 chr12 55847289 55847323 -65410207 + A-rich Low_complexity Low_complexity 5 37 0 8 1011 513 202 18 55 chr12 55848354 55848464 -65409066 - PB1D10 SINE Alu 0 117 12 8 1011 354 269 21 0 chr12 55848387 55848480 -65409050 - ID_B1 SINE B4 -53 171 77 8 1011 1192 61 0 7 chr12 55848481 55848630 -65408900 - B1_Mus1 SINE Alu 0 148 1 8 1011 995 64 0 0 chr12 55848734 55848859 -65408671 + B2_Mm2 SINE B2 3 127 -68 8 1011 812 58 0 0 chr12 55848899 55849003 -65408527 - B1_Mus2 SINE Alu -3 144 41 8 1011 333 276 37 37 chr12 55849003 55849112 -65408418 + PB1D9 SINE Alu 2 110 -10 8 1011 1258 151 164 60 chr12 55849126 55849444 -65408086 + ORR1C2 LTR MaLR 1 351 -33 8 1011 610 155 8 68 chr12 55849439 55849557 -65407973 + PB1D9 SINE Alu 10 120 0 8 1011 186 43 0 0 chr12 55849557 55849580 -65407950 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1011 348 132 0 0 chr12 55849581 55849634 -65407896 + ORR1C2 LTR MaLR 332 384 0 8 1011 359 254 20 39 chr12 55849673 55849774 -65407756 + PB1D10 SINE Alu 25 126 -23 8 1011 252 275 54 21 chr12 55849797 55849890 -65407640 + B4A SINE B4 24 119 -173 8 1011 734 216 27 22 chr12 55849896 55850081 -65407449 - ORR1B2 LTR MaLR -4 363 178 8 1011 450 0 0 0 chr12 55850082 55850132 -65407398 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 8 1011 294 319 89 13 chr12 55850154 55850264 -65407266 + B1F1 SINE Alu 13 129 -21 8 1011 411 230 36 0 chr12 55850284 55850368 -65407162 + ID4 SINE ID 8 91 -61 8 1011 398 226 275 48 chr12 55850439 55850462 -65407068 - B3 SINE B2 -6 210 168 8 1011 417 109 0 0 chr12 55850462 55850526 -65407004 + (TATG)n Simple_repeat Simple_repeat 3 66 0 8 1011 398 226 275 48 chr12 55850526 55850669 -65406861 - B3 SINE B2 -49 167 7 8 1011 790 127 352 25 chr12 55850703 55850865 -65406665 + B3 SINE B2 1 215 -1 8 1011 766 214 29 0 chr12 55850882 55851022 -65406508 + B1_Mur4 SINE Alu 2 145 -5 8 1011 282 212 65 67 chr12 55851035 55851164 -65406366 - L1M4 LINE L1 -1926 5859 5725 8 1011 245 27 54 0 chr12 55851173 55851210 -65406320 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1011 1200 36 0 0 chr12 55851210 55851347 -65406183 - B1_Mus2 SINE Alu -10 137 1 8 1011 1686 48 0 0 chr12 55851377 55851584 -65405946 + L1Md_A LINE L1 6375 6581 -1 8 1011 393 350 17 0 chr12 55851586 55851706 -65405824 - B3A SINE B2 -8 190 69 8 1011 402 250 34 0 chr12 55851737 55851825 -65405705 - 4.5SRNA scRNA scRNA -3 91 1 8 1011 394 183 162 17 chr12 55851878 55851979 -65405551 + B1F1 SINE Alu 28 137 -12 8 1011 1286 34 0 0 chr12 55851979 55852126 -65405404 + B1_Mm SINE Alu 1 147 0 8 1011 394 208 66 47 chr12 55852126 55852140 -65405390 + B1F1 SINE Alu 138 149 0 8 1011 180 0 0 0 chr12 55852164 55852184 -65405346 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 8 1011 291 301 27 0 chr12 55852208 55852281 -65405249 + ID4_ SINE ID 8 82 -1 8 1011 313 329 110 14 chr12 55852296 55852441 -65405089 + RSINE1 SINE B4 3 161 -4 9 1011 1470 50 39 0 chr12 55852563 55852742 -65404788 - B2_Mm2 SINE B2 -9 186 1 9 1011 1295 116 21 0 chr12 55853185 55853374 -65404156 - B2_Mm2 SINE B2 -1 194 2 9 1011 410 218 96 27 chr12 55853470 55853616 -65403914 - L1MB8 LINE L1 -6 6172 6017 9 1011 584 245 36 7 chr12 55853637 55853777 -65403753 - ID_B1 SINE B4 0 224 81 9 1011 660 186 0 17 chr12 55853798 55853918 -65403612 - PB1D9 SINE Alu -2 118 1 9 1011 316 253 110 0 chr12 55853987 55854078 -65403452 + PB1D9 SINE Alu 1 101 -19 9 1011 379 250 33 43 chr12 55854103 55854195 -65403335 - U6 snRNA snRNA -15 92 2 9 1011 1158 105 41 0 chr12 55854630 55854802 -65402728 + B2_Mm1t SINE B2 2 180 -13 9 1011 372 142 0 5 chr12 55854814 55854879 -65402651 + B2_Mm2 SINE B2 47 109 -107 9 1011 234 0 0 0 chr12 55854910 55854936 -65402594 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 9 1011 698 136 45 0 chr12 55854938 55855048 -65402482 - B1_Mus2 SINE Alu -14 133 19 9 1011 308 259 45 34 chr12 55855079 55855167 -65402363 - PB1D10 SINE Alu -1 116 28 9 1011 450 126 225 75 chr12 55855674 55855794 -65401736 + B1_Mus1 SINE Alu 6 143 -5 9 1011 539 179 38 0 chr12 55855816 55855922 -65401608 - PB1D10 SINE Alu -7 110 1 9 1011 283 366 0 47 chr12 55855963 55856069 -65401461 - RSINE1 SINE B4 0 165 65 9 1011 234 255 108 39 chr12 55856153 55856255 -65401275 - PB1D9 SINE Alu -11 109 1 9 1011 421 275 18 35 chr12 55856274 55856387 -65401143 - PB1D9 SINE Alu -6 114 4 9 1011 863 158 79 0 chr12 55856540 55856679 -65400851 - B1_Mur4 SINE Alu 0 150 1 9 1011 204 253 38 12 chr12 55856739 55856819 -65400711 + A-rich Low_complexity Low_complexity 3 84 0 9 1011 738 196 53 0 chr12 55856931 55857064 -65400466 + ID_B1 SINE B4 78 217 -7 9 1011 305 236 21 82 chr12 55857238 55857252 -65400278 - B4 SINE B4 -128 164 130 9 1011 392 127 0 16 chr12 55857252 55857316 -65400214 - B1_Mur4 SINE Alu -85 65 3 9 1011 305 236 21 82 chr12 55857316 55857335 -65400195 - B4 SINE B4 -128 129 74 9 1011 1228 55 0 0 chr12 55857549 55857694 -65399836 + B1_Mm SINE Alu 3 147 0 9 1011 21 0 0 0 chr12 55857841 55857862 -65399668 + AT_rich Low_complexity Low_complexity 1 21 0 9 1011 521 151 159 87 chr12 55858383 55858521 -65399009 + B1_Mur2 SINE Alu 1 148 -1 9 1011 1127 127 0 99 chr12 55858588 55858789 -65398741 + B2_Mm2 SINE B2 1 181 -14 9 1011 408 106 310 26 chr12 55858821 55858937 -65398593 + B2_Mm2 SINE B2 47 195 0 9 1011 1387 87 11 5 chr12 55858994 55859180 -65398350 + B2_Mm2 SINE B2 1 187 -8 9 1011 213 39 0 0 chr12 55859197 55859223 -65398307 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 9 1011 604 53 0 0 chr12 55859230 55859306 -65398224 - B2_Mm2 SINE B2 -117 78 3 9 1011 326 217 0 0 chr12 55859358 55859418 -65398112 - ID4 SINE ID -19 64 5 9 1011 393 248 45 9 chr12 55859545 55859655 -65397875 + PB1D9 SINE Alu 2 115 -5 9 1011 589 236 86 27 chr12 55859672 55859859 -65397671 + B3A SINE B2 1 198 0 9 1011 226 53 26 0 chr12 55859911 55859949 -65397581 - B3 SINE B2 -1 215 177 9 1011 1000 125 62 11 chr12 55859968 55860146 -65397384 - B2_Mm2 SINE B2 -8 187 1 9 1011 439 255 44 49 chr12 55860147 55860279 -65397251 - B3A SINE B2 -13 182 55 9 1011 444 250 60 0 chr12 55860318 55860418 -65397112 - PB1D10 SINE Alu 0 117 12 9 1011 449 289 0 62 chr12 55860571 55860700 -65396830 + ID_B1 SINE B4 85 205 -19 9 1011 585 0 0 0 chr12 55860921 55860986 -65396544 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 9 1011 645 229 8 0 chr12 55860992 55861110 -65396420 - B1_Mur1 SINE Alu -29 120 2 9 1011 23 54 0 0 chr12 55861172 55861209 -65396321 + AT_rich Low_complexity Low_complexity 1 37 0 9 1011 222 174 21 21 chr12 55861655 55861702 -65395828 + (CATA)n Simple_repeat Simple_repeat 2 48 0 9 1011 208 291 24 48 chr12 55862388 55862471 -65395059 + MIR SINE MIR 138 218 -44 9 1011 640 228 25 71 chr12 55862676 55862874 -65394656 - B3A SINE B2 -9 189 1 9 1011 230 268 0 0 chr12 55862894 55862935 -65394595 + B4A SINE B4 83 123 -169 9 1011 313 209 126 11 chr12 55862927 55863014 -65394516 - B1F SINE Alu -45 104 8 9 1011 293 226 27 54 chr12 55862963 55863061 -65394469 - B4 SINE B4 -147 145 56 9 1011 50 45 0 11 chr12 55863164 55863210 -65394320 + AT_rich Low_complexity Low_complexity 1 46 0 9 1011 1274 82 21 47 chr12 55863210 55863308 -65394222 + B2_Mm2 SINE B2 1 91 -104 9 1011 279 0 0 0 chr12 55863308 55863339 -65394191 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1011 1274 82 21 47 chr12 55863339 55863432 -65394098 + B2_Mm2 SINE B2 92 187 -8 9 1011 50 45 0 11 chr12 55863432 55863474 -65394056 + AT_rich Low_complexity Low_complexity 1 42 0 9 1011 349 227 98 49 chr12 55863504 55863606 -65393924 - RSINE1 SINE B4 -51 114 8 9 1011 1182 61 0 7 chr12 55863839 55863987 -65393543 - B1_Mus2 SINE Alu 0 147 1 9 1011 414 340 75 6 chr12 55863987 55864147 -65393383 + ID_B1 SINE B4 50 220 -4 9 1011 470 187 138 54 chr12 55864270 55864400 -65393130 + B3A SINE B2 42 182 -16 9 1011 543 218 121 0 chr12 55864425 55864549 -65392981 - B1_Mur4 SINE Alu -10 140 2 9 1011 752 245 101 15 chr12 55865126 55865325 -65392205 - B3 SINE B2 0 216 1 9 1011 21 0 0 0 chr12 55865357 55865378 -65392152 + AT_rich Low_complexity Low_complexity 1 21 0 9 1011 199 256 22 89 chr12 55865471 55865561 -65391969 + MIRb SINE MIR 104 187 -81 9 1011 1141 21 42 14 chr12 55865862 55866004 -65391526 - B1_Mus2 SINE Alu -1 146 1 9 1011 252 316 124 3 chr12 55866004 55866159 -65391371 - MIR SINE MIR -5 263 83 9 1011 496 265 17 0 chr12 55866411 55866528 -65391002 + PB1D9 SINE Alu 1 119 -1 9 1011 864 191 32 11 chr12 55866749 55866939 -65390591 + B2_Mm2 SINE B2 1 194 -1 9 1011 345 145 43 0 chr12 55867036 55867105 -65390425 - B2_Mm2 SINE B2 0 195 124 9 1011 294 254 83 14 chr12 55867105 55867177 -65390353 + RSINE1 SINE B4 61 137 -28 9 1011 21 36 0 0 chr12 55867191 55867219 -65390311 + AT_rich Low_complexity Low_complexity 1 28 0 9 1011 308 257 73 89 chr12 55867224 55867348 -65390182 + B1_Mur3 SINE Alu 1 122 -27 9 1011 252 254 43 43 chr12 55867316 55867386 -65390144 - ID4_ SINE ID -12 71 2 9 1011 859 190 196 0 chr12 55867419 55867598 -65389932 - B3 SINE B2 0 216 3 9 1011 1239 48 0 0 chr12 55867627 55867774 -65389756 - B1_Mus2 SINE Alu 0 147 1 9 1011 792 117 33 0 chr12 55867943 55868063 -65389467 - B1_Mur4 SINE Alu 0 150 27 9 1011 208 139 0 0 chr12 55868394 55868430 -65389100 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1011 453 307 103 10 chr12 55868435 55868639 -65388891 + ID_B1 SINE B4 1 223 -1 9 1011 211 267 0 0 chr12 55868806 55868851 -65388679 + RSINE1 SINE B4 48 92 -73 9 1011 641 187 161 0 chr12 55870369 55870524 -65387006 - B3A SINE B2 -18 180 1 9 1011 484 254 79 36 chr12 55870649 55870788 -65386742 - ID_B1 SINE B4 -2 222 78 9 1011 354 296 81 7 chr12 55870788 55870808 -65386722 - B4 SINE B4 -69 223 200 9 1011 306 67 0 0 chr12 55870808 55870853 -65386677 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 9 1011 595 208 0 0 chr12 55870854 55870960 -65386570 - B1_Mur3 SINE Alu -43 106 1 9 1011 414 322 87 0 chr12 55870986 55871101 -65386429 - B1_Mur1 SINE Alu -21 128 4 9 1011 1214 48 0 7 chr12 55871132 55871280 -65386250 - B1_Mm SINE Alu 0 147 1 9 1011 541 57 0 14 chr12 55871283 55871354 -65386176 - B1_Mus2 SINE Alu 0 147 78 9 1011 1231 28 7 0 chr12 55871887 55872031 -65385499 - B1_Mm SINE Alu -1 146 2 9 1011 475 288 48 7 chr12 55872051 55872198 -65385332 - RSINE1 SINE B4 -12 153 1 9 1011 1043 39 0 0 chr12 55872389 55872517 -65385013 + B1_Mus2 SINE Alu 20 147 0 9 1011 561 210 133 31 chr12 55872607 55872735 -65384795 + B1_Mur4 SINE Alu 9 149 -1 9 1011 216 346 25 25 chr12 55872680 55872760 -65384770 - B1F2 SINE Alu -35 114 35 9 1011 198 143 0 0 chr12 55872777 55872812 -65384718 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1011 217 291 61 107 chr12 55872835 55872876 -65384654 + ID_B1 SINE B4 47 171 -53 9 1011 264 259 78 56 chr12 55872876 55872966 -65384564 + B1F1 SINE Alu 2 93 -56 9 1011 1916 185 144 78 chr12 55873002 55873329 -65384201 + Lx7 LINE L1 6803 7174 -522 9 1011 1295 27 0 0 chr12 55873329 55873477 -65384053 + B1_Mus1 SINE Alu 1 148 0 9 1011 1916 185 144 78 chr12 55873477 55873711 -65383819 + Lx7 LINE L1 7175 7401 -295 9 1011 195 42 0 0 chr12 55873712 55873736 -65383794 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1011 430 211 53 61 chr12 55873770 55873901 -65383629 + Lx7 LINE L1 7563 7692 -4 9 1011 21 71 0 0 chr12 55873914 55873956 -65383574 + AT_rich Low_complexity Low_complexity 1 42 0 9 1011 975 193 50 15 chr12 55873956 55874156 -65383374 - B3 SINE B2 -9 207 1 9 1011 441 296 29 57 chr12 55874668 55874808 -65382722 + B1F SINE Alu 14 149 0 9 1011 524 258 69 12 chr12 55874981 55875165 -65382365 + B3A SINE B2 3 205 -11 9 1011 5635 50 65 0 chr12 55875210 55875907 -65381623 + RLTR4_Mm LTR ERV1 1 742 0 9 1011 69554 11 2 0 chr12 55875907 55883495 -65374035 + RLTR4_MM-int LTR ERV1 1 7601 0 9 1011 5648 49 65 0 chr12 55883495 55884192 -65373338 + RLTR4_Mm LTR ERV1 1 742 0 9 1011 659 230 67 0 chr12 55884194 55884329 -65373201 + B3A SINE B2 50 193 -5 9 1011 276 30 0 0 chr12 55884329 55884362 -65373168 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 1 1011 623 206 24 0 chr12 55884613 55884739 -65372791 + B1_Mur2 SINE Alu 1 129 -20 1 1011 285 169 136 0 chr12 55884783 55884842 -65372688 + B1_Mur2 SINE Alu 77 143 -6 1 1011 320 291 9 35 chr12 55885142 55885256 -65372274 - B3 SINE B2 -6 210 100 1 1011 256 287 66 0 chr12 55885306 55885398 -65372132 + PB1D10 SINE Alu 15 115 -34 1 1011 461 298 62 3 chr12 55885467 55885620 -65371910 + MLT1D LTR MaLR 1 162 -465 1 1011 1242 78 42 6 chr12 55885620 55885788 -65371742 - B2_Mm2 SINE B2 -19 176 3 1 1011 354 346 66 22 chr12 55885788 55885817 -65371713 + MLT1D LTR MaLR 163 191 -436 1 1011 569 217 8 25 chr12 55885826 55885944 -65371586 + B1_Mur2 SINE Alu 29 144 -5 1 1011 333 255 112 0 chr12 55886081 55886179 -65371351 + MLT1D LTR MaLR 397 505 0 1 1011 459 254 72 0 chr12 55886401 55886539 -65370991 + B1F SINE Alu 1 148 -1 1 1011 292 330 26 18 chr12 55886640 55886754 -65370776 - PB1D9 SINE Alu -1 119 5 1 1011 547 103 0 0 chr12 55886833 55886911 -65370619 + URR1B DNA MER1_type 148 225 0 1 1011 856 65 0 0 chr12 55886934 55887042 -65370488 + B1_Mm SINE Alu 40 147 0 1 1011 630 89 0 0 chr12 55887330 55887420 -65370110 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 1011 1572 43 27 0 chr12 55887446 55887634 -65369896 + B2_Mm1t SINE B2 1 193 0 1 1011 520 288 223 0 chr12 55887703 55887887 -65369643 - B4A SINE B4 -65 227 3 1 1011 773 216 32 7 chr12 55887889 55888075 -65369455 - B3 SINE B2 0 198 2 1 1011 279 283 45 54 chr12 55888241 55888353 -65369177 + ID_B1 SINE B4 51 161 -63 1 1011 402 211 66 19 chr12 55888280 55888386 -65369144 + B1_Mus2 SINE Alu 10 120 0 1 1011 210 37 0 0 chr12 55888602 55888629 -65368901 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1011 597 197 85 23 chr12 55888629 55888759 -65368771 - B1_Mur4 SINE Alu -10 140 3 1 1011 254 278 34 77 chr12 55889172 55889289 -65368241 + MT2B LTR ERVL 139 250 -351 1 1011 415 220 25 0 chr12 55889205 55889305 -65368225 + B1_Mur2 SINE Alu 12 114 -6 1 1011 574 274 20 84 chr12 55889342 55889545 -65367985 + B3A SINE B2 2 191 -7 1 1011 1160 82 0 0 chr12 55889549 55889695 -65367835 + B1_Mm SINE Alu 2 147 0 1 1011 641 149 44 0 chr12 55889720 55889834 -65367696 + PB1D9 SINE Alu 1 119 -1 1 1011 321 206 171 3 chr12 55890484 55890636 -65366894 + MTD LTR MaLR 226 401 -20 1 1011 210 314 137 0 chr12 55891538 55891640 -65365890 + PB1D10 SINE Alu 1 116 -1 1 1011 277 245 264 0 chr12 55891664 55891770 -65365760 + RSINE1 SINE B4 4 137 -28 1 1011 1480 134 4 18 chr12 55891860 55892088 -65365442 - URR1B DNA MER1_type 0 225 1 1 1011 357 129 0 0 chr12 55892280 55892350 -65365180 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1011 291 276 35 0 chr12 55892377 55892464 -65365066 + RSINE1 SINE B4 49 138 -27 1 1011 319 265 38 29 chr12 55892861 55892966 -65364564 - RSINE1 SINE B4 -21 144 39 1 1011 1399 77 28 0 chr12 55893377 55893558 -65363972 + B2_Mm2 SINE B2 1 186 -9 1 1011 878 150 13 26 chr12 55893568 55893719 -65363811 + B1_Mur3 SINE Alu 1 149 0 1 1011 1066 22 0 0 chr12 55893809 55893943 -65363587 - B1_Mm SINE Alu 0 147 14 1 1011 528 216 25 33 chr12 55894147 55894267 -65363263 + PB1D9 SINE Alu 2 120 0 1 1011 1179 54 7 13 chr12 55894458 55894607 -65362923 + B1_Mus1 SINE Alu 1 148 0 1 1011 359 229 113 9 chr12 55894797 55894903 -65362627 + RSINE1 SINE B4 4 120 -45 1 1011 469 259 68 34 chr12 55895015 55895191 -65362339 + B3A SINE B2 1 182 -16 1 1011 903 195 121 42 chr12 55895584 55895890 -65361640 + L1MA9 LINE L1 5981 6310 -2 1 1011 29 47 0 0 chr12 55896565 55896608 -65360922 + GC_rich Low_complexity Low_complexity 1 43 0 1 1011 22 88 0 0 chr12 55896695 55896752 -65360778 + GC_rich Low_complexity Low_complexity 1 57 0 1 1011 356 256 81 57 chr12 55897274 55897398 -65360132 + RSINE1 SINE B4 3 129 -36 1 1011 29 0 0 0 chr12 55897403 55897432 -65360098 + AT_rich Low_complexity Low_complexity 1 29 0 1 1011 288 0 0 0 chr12 55897495 55897527 -65360003 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1011 1026 60 0 43 chr12 55897527 55897667 -65359863 - B1_Mus1 SINE Alu -12 136 3 1 1011 383 205 68 43 chr12 55897868 55897985 -65359545 + RLTR19-int LTR ERVK 4238 4357 -1780 1 1011 369 0 0 0 chr12 55898148 55898189 -65359341 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1011 1097 64 6 0 chr12 55898189 55898346 -65359184 - B2_Mm1a SINE B2 -35 158 1 1 1011 1243 99 0 67 chr12 55898582 55898776 -65358754 + B2_Mm2 SINE B2 1 181 -14 1 1011 3630 161 87 36 chr12 55898788 55899628 -65357902 + RMER19B LTR ERVK 20 873 -29 1 1011 1200 120 16 27 chr12 55899628 55899816 -65357714 + B2_Mm2 SINE B2 1 186 -9 1 1011 3630 157 93 25 chr12 55899816 55899840 -65357690 + RMER19B LTR ERVK 874 890 -12 1 1011 229 273 30 15 chr12 55899884 55899951 -65357579 - B1F2 SINE Alu -28 121 54 1 1011 210 316 0 17 chr12 55899943 55900001 -65357529 - B4 SINE B4 -161 131 75 1 1011 369 272 12 0 chr12 55900109 55900190 -65357340 - PB1D10 SINE Alu -27 90 9 1 1011 218 279 24 48 chr12 55900446 55900529 -65357001 - B4A SINE B4 -129 163 83 1 1011 291 104 0 0 chr12 55900531 55900579 -65356951 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1011 937 77 0 0 chr12 55900579 55900709 -65356821 - B1_Mus2 SINE Alu 0 147 18 1 1011 563 249 54 89 chr12 55900584 55900787 -65356743 - B4 SINE B4 -71 221 26 1 1011 1454 68 5 15 chr12 55900804 55900999 -65356531 - B2_Mm1a SINE B2 0 193 1 1 1011 876 162 0 0 chr12 55901341 55901483 -65356047 + B1_Mus1 SINE Alu 6 147 -1 1 1011 458 303 68 60 chr12 55901487 55901722 -65355808 - B4 SINE B4 0 292 56 1 1011 634 225 7 34 chr12 55901832 55901979 -65355551 + B1F SINE Alu 1 143 -6 1 1011 1163 48 0 58 chr12 55901988 55902143 -65355387 + B1_Mus2 SINE Alu 1 146 -1 1 1011 240 286 14 0 chr12 55902189 55902259 -65355271 + ID_B1 SINE B4 142 212 -12 1 1011 741 79 0 0 chr12 55902281 55902382 -65355148 + (TCTCCC)n Simple_repeat Simple_repeat 3 103 0 1 1011 234 0 0 0 chr12 55902382 55902407 -65355123 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1011 306 132 0 0 chr12 55902523 55902576 -65354954 + (T)n Simple_repeat Simple_repeat 1 53 0 1 1011 775 57 0 19 chr12 55902577 55902685 -65354845 - B1_Mus2 SINE Alu 0 147 42 1 1011 1379 90 32 0 chr12 55902726 55902915 -65354615 - B2_Mm2 SINE B2 0 195 1 1 1011 446 264 51 19 chr12 55902939 55903097 -65354433 - RSINE1 SINE B4 0 165 3 1 1011 467 271 16 71 chr12 55903426 55903553 -65353977 + B1_Mur2 SINE Alu 1 120 0 1 1011 1071 51 73 0 chr12 55903674 55903811 -65353719 - B1_Mm SINE Alu 0 147 1 1 1011 332 222 19 57 chr12 55903838 55903943 -65353587 + B3A SINE B2 98 198 0 1 1011 509 117 0 0 chr12 55903946 55904023 -65353507 + B1_Mur4 SINE Alu 69 145 -5 1 1011 1269 109 0 85 chr12 55904143 55904354 -65353176 - B2_Mm2 SINE B2 -1 194 2 1 1011 470 17 17 0 chr12 55904521 55904580 -65352950 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1011 483 241 9 0 chr12 55904596 55904704 -65352826 - ID_B1 SINE B4 -21 203 95 1 1011 365 293 49 0 chr12 55904704 55904716 -65352814 - B1F SINE Alu -20 126 1 1 1011 649 234 36 7 chr12 55904744 55904882 -65352648 + RSINE1 SINE B4 2 143 -22 1 1011 288 0 0 0 chr12 55904883 55904915 -65352615 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1011 507 287 66 13 chr12 55904941 55905093 -65352437 + RSINE1 SINE B4 6 165 0 1 1011 1404 175 165 3 chr12 55905137 55905458 -65352072 + ORR1D1 LTR MaLR 2 374 0 1 1011 557 281 26 13 chr12 55905461 55905616 -65351914 + RSINE1 SINE B4 8 164 -1 1 1011 475 161 233 35 chr12 55905627 55905743 -65351787 + B1_Mus2 SINE Alu 3 141 -6 1 1011 200 35 35 0 chr12 55905748 55905777 -65351753 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1 1011 765 234 23 72 chr12 55905873 55906094 -65351436 - B3 SINE B2 -6 210 1 1 1011 1596 37 0 5 chr12 55906204 55906392 -65351138 + B2_Mm1t SINE B2 2 188 -5 1 1011 571 198 33 0 chr12 55906405 55906526 -65351004 + B1_Mus1 SINE Alu 14 138 -10 1 1011 338 224 131 10 chr12 55906916 55907031 -65350499 + B1F SINE Alu 6 140 -9 1 1011 209 211 0 62 chr12 55907033 55907129 -65350401 + GA-rich Low_complexity Low_complexity 2 91 0 1 1011 323 0 48 0 chr12 55908001 55908043 -65349487 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 1011 1121 65 32 0 chr12 55908043 55908197 -65349333 - B2_Mm1a SINE B2 -33 160 2 1 1011 503 205 87 32 chr12 55908301 55908427 -65349103 - RSINE1 SINE B4 -27 138 6 1 1011 346 239 52 17 chr12 55908431 55908546 -65348984 - PB1D7 SINE Alu -1 119 1 1 1011 307 52 0 17 chr12 55908954 55909013 -65348517 - B2_Mm2 SINE B2 -1 194 137 1 1011 1099 98 92 0 chr12 55909084 55909247 -65348283 - B2_Mm1t SINE B2 -14 179 2 1 1011 395 191 255 0 chr12 55909372 55909466 -65348064 + ID_B1 SINE B4 103 220 -4 1 1011 864 159 226 6 chr12 55909618 55909795 -65347735 + B3 SINE B2 1 216 0 1 1011 326 308 58 126 chr12 55909954 55910031 -65347499 - ID_B1 SINE B4 -141 151 2 1 1011 379 305 0 0 chr12 55910031 55910113 -65347417 - ID4 SINE ID 0 83 2 1 1011 470 227 47 8 chr12 55910250 55910379 -65347151 + B1F SINE Alu 5 138 -11 1 1011 522 212 51 42 chr12 55910380 55910498 -65347032 + PB1D9 SINE Alu 1 119 -1 1 1011 420 341 21 49 chr12 55910540 55910682 -65346848 + RSINE1 SINE B4 2 139 -26 1 1011 1031 149 0 0 chr12 55910732 55910880 -65346650 + B1_Mur2 SINE Alu 2 149 0 1 1011 907 161 0 11 chr12 55910913 55911095 -65346435 + GA-rich Low_complexity Low_complexity 1 180 0 1 1011 216 0 0 0 chr12 55911527 55911551 -65345979 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1011 546 226 8 31 chr12 55911554 55911682 -65345848 - ID_B1 SINE B4 -18 206 82 1 1011 189 0 0 0 chr12 55911686 55911707 -65345823 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 1011 409 219 193 0 chr12 55911707 55911821 -65345709 - B1F SINE Alu -13 136 1 1 1011 402 235 0 128 chr12 55911895 55911920 -65345610 - PB1D7 SINE Alu -1 119 96 1 1011 1251 48 0 0 chr12 55911920 55912067 -65345463 + B1_Mm SINE Alu 1 147 0 1 1011 454 225 0 46 chr12 55912067 55912163 -65345367 - B1F1 SINE Alu -48 101 13 1 1011 570 68 6 0 chr12 55912204 55912314 -65345216 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 1 1011 1154 102 0 6 chr12 55912314 55912491 -65345039 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1 1011 404 130 14 0 chr12 55912491 55912516 -65345014 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 1 1011 485 71 14 0 chr12 55912516 55912586 -65344944 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1011 513 0 0 0 chr12 55912586 55912643 -65344887 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 1 1011 568 227 109 0 chr12 55912643 55912771 -65344759 - B1_Mur2 SINE Alu -6 143 2 1 1011 665 264 47 104 chr12 55912794 55912866 -65344664 - RMER10A LTR ERVL -13 429 358 1 1011 1662 146 268 8 chr12 55912866 55913232 -65344298 + RMER6B LTR ERVK 1 461 0 1 1011 665 264 47 104 chr12 55913232 55913603 -65343927 - RMER10A LTR ERVL -85 357 12 1 1011 590 280 89 55 chr12 55913952 55914086 -65343444 + RMER5 LTR ERV1 28 179 -355 1 1011 1223 161 12 71 chr12 55914086 55914232 -65343298 - URR1A DNA MER1_type 0 226 86 1 1011 234 0 0 0 chr12 55914232 55914258 -65343272 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1011 1243 28 0 0 chr12 55914258 55914402 -65343128 - B1_Mm SINE Alu -3 144 1 1 1011 1223 161 12 71 chr12 55914402 55914494 -65343036 - URR1A DNA MER1_type -141 85 2 1 1011 590 280 89 55 chr12 55914494 55914741 -65342789 + RMER5 LTR ERV1 180 422 -112 1 1011 628 234 21 0 chr12 55914717 55914858 -65342672 + ID_B1 SINE B4 79 222 -2 1 1011 353 284 0 0 chr12 55914866 55914954 -65342576 + PB1D9 SINE Alu 1 88 -32 1 1011 942 144 0 27 chr12 55915008 55915158 -65342372 + B1_Mur2 SINE Alu 3 148 -1 1 1011 2229 186 42 33 chr12 55915160 55915639 -65341891 + Lx7 LINE L1 6687 7169 -527 1 1011 1672 31 0 0 chr12 55915645 55915837 -65341693 - B2_Mm1a SINE B2 0 193 2 1 1011 734 196 58 40 chr12 55916153 55916280 -65341250 + L1_Mur2 LINE L1 892 1017 -6711 1 1011 1127 58 0 0 chr12 55916280 55916418 -65341112 + B1_Mus2 SINE Alu 1 138 -9 1 1011 342 0 0 0 chr12 55916418 55916456 -65341074 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1011 734 196 58 40 chr12 55916456 55916550 -65340980 + L1_Mur2 LINE L1 1018 1117 -6611 1 1011 550 53 0 0 chr12 55916550 55916626 -65340904 + B2_Mm2 SINE B2 1 76 -119 1 1011 1349 85 37 0 chr12 55916724 55916912 -65340618 + B2_Mm2 SINE B2 1 195 0 1 1011 2644 41 3 0 chr12 55916932 55917272 -65340258 + ORR1A1 LTR MaLR 1 341 -5 1 1011 681 175 50 21 chr12 55917272 55917412 -65340118 + B1_Mur3 SINE Alu 1 144 -5 1 1011 333 0 0 0 chr12 55917414 55917451 -65340079 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1011 6350 165 88 54 chr12 55917484 55917919 -65339611 + L1_Mur2 LINE L1 1046 1496 -4384 1 1011 257 77 0 0 chr12 55917919 55917958 -65339572 + B1_Mus2 SINE Alu 101 139 -8 1 1011 229 0 83 0 chr12 55917958 55917994 -65339536 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1011 6350 168 133 105 chr12 55917994 55918039 -65339491 + L1_Mur2 LINE L1 1497 1540 -4340 1 1011 1066 43 0 0 chr12 55918039 55918178 -65339352 - B1_Mus2 SINE Alu 0 147 9 1 1011 6350 168 133 105 chr12 55918178 55918693 -65338837 + L1_Mur2 LINE L1 1541 2056 -3824 1 1011 234 62 0 0 chr12 55918693 55918725 -65338805 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1011 6350 168 133 105 chr12 55918725 55919545 -65337985 + L1_Mur2 LINE L1 2057 3102 -2778 1 1011 1402 182 92 103 chr12 55919539 55919993 -65337537 + Lx7 LINE L1 7248 7696 0 1 1011 1382 72 11 0 chr12 55920005 55920185 -65337345 + B2_Mm1t SINE B2 4 185 -8 1 1011 631 220 22 22 chr12 55920405 55920540 -65336990 - RSINE1 SINE B4 -28 137 3 1 1011 432 304 103 85 chr12 55920613 55920991 -65336539 + MLT1D LTR MaLR 33 417 -88 1 1011 885 177 0 13 chr12 55921067 55921216 -65336314 - B1_Mur1 SINE Alu -2 147 1 1 1011 469 289 90 0 chr12 55921218 55921374 -65336156 - ID_B1 SINE B4 -3 221 52 1 1011 180 0 0 0 chr12 55921774 55921794 -65335736 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1011 1955 123 6 10 chr12 55922037 55922350 -65335180 - MTC LTR MaLR 0 421 110 1 1011 595 154 29 159 chr12 55922352 55922522 -65335008 + B1_Mur3 SINE Alu 1 148 -1 1 1011 962 86 99 0 chr12 55922576 55922728 -65334802 + B2_Mm1a SINE B2 1 167 -26 1 1011 231 167 0 77 chr12 55922794 55922846 -65334684 - B1_Mur4 SINE Alu -101 49 2 1 1011 608 140 0 9 chr12 55922855 55922963 -65334567 + (TCC)n Simple_repeat Simple_repeat 3 109 0 1 1011 380 119 30 0 chr12 55923009 55923076 -65334454 + (TATG)n Simple_repeat Simple_repeat 3 71 0 1 1011 550 266 44 31 chr12 55923086 55923245 -65334285 - RSINE1 SINE B4 -2 163 3 1 1011 504 90 179 57 chr12 55923483 55923589 -65333941 - PB1D9 SINE Alu 0 120 2 1 1011 261 75 0 0 chr12 55923597 55923637 -65333893 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1011 1180 61 0 0 chr12 55923637 55923784 -65333746 - B1_Mm SINE Alu 0 147 1 1 1011 548 267 30 15 chr12 55924345 55924478 -65333052 - B1_Mur1 SINE Alu -1 148 14 1 1011 517 264 8 8 chr12 55924594 55924720 -65332810 + RSINE1 SINE B4 3 128 -37 1 1011 252 0 0 0 chr12 55924809 55924837 -65332693 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1011 349 202 26 96 chr12 55924857 55924972 -65332558 - PB1D9 SINE Alu -13 107 1 1 1011 24 0 0 0 chr12 55924973 55924997 -65332533 + AT_rich Low_complexity Low_complexity 1 24 0 1 1011 543 275 52 12 chr12 55925014 55925187 -65332343 - B3A SINE B2 -17 181 2 1 1011 1004 8 8 0 chr12 55925542 55925668 -65331862 - B1_Mm SINE Alu -1 146 20 1 1011 594 191 14 84 chr12 55925881 55926024 -65331506 - ID_B1 SINE B4 -5 219 87 1 1011 414 288 17 0 chr12 55926061 55926179 -65331351 + PB1D7 SINE Alu 1 120 0 1 1011 816 209 9 75 chr12 55926269 55926481 -65331049 + B3A SINE B2 1 198 0 1 1011 653 240 0 0 chr12 55926504 55926633 -65330897 + ID_B1 SINE B4 93 221 -3 1 1011 243 254 27 95 chr12 55926516 55926634 -65330896 - YREP_Mm Unknown Unknown -1519 293 180 1 1011 224 30 0 29 chr12 55926634 55926668 -65330862 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1011 243 254 27 95 chr12 55926668 55926697 -65330833 - YREP_Mm Unknown Unknown -1633 179 157 1 1011 626 208 6 25 chr12 55926888 55927051 -65330479 - MTC LTR MaLR -259 162 3 1 1011 792 142 104 0 chr12 55927238 55927372 -65330158 - B1_Mus1 SINE Alu 0 148 1 1 1011 1200 54 0 0 chr12 55927415 55927562 -65329968 + B1_Mus1 SINE Alu 2 148 0 1 1011 509 124 0 10 chr12 55927640 55927738 -65329792 + (GGA)n Simple_repeat Simple_repeat 3 99 0 1 1011 219 174 65 0 chr12 55927739 55927785 -65329745 - B4A SINE B4 -154 138 90 1 1011 611 113 19 9 chr12 55927824 55927931 -65329599 - B1_Mus2 SINE Alu -1 146 39 1 1011 246 258 15 0 chr12 55927881 55927947 -65329583 - 4.5SRNA scRNA scRNA -8 86 20 1 1011 380 88 18 0 chr12 55928358 55928415 -65329115 + MTD LTR MaLR 2 59 -362 1 1011 710 161 24 0 chr12 55928415 55928539 -65328991 + RLTR24 LTR ERV1 1 127 -402 1 1011 396 156 0 0 chr12 55928538 55928615 -65328915 + RLTR24 LTR ERV1 453 529 0 1 1011 1197 194 144 21 chr12 55928615 55928929 -65328601 + MTD LTR MaLR 57 410 -9 1 1011 227 186 0 0 chr12 55929270 55929313 -65328217 + LTR33 LTR ERVL 473 515 0 1 1011 212 197 98 0 chr12 55929460 55929521 -65328009 + ID SINE ID 1 67 -157 1 1011 639 191 0 92 chr12 55929621 55929794 -65327736 + RMER10B LTR ERVL 202 358 -40 1 1011 1430 167 111 30 chr12 55929846 55930179 -65327351 - ORR1C2 LTR MaLR 0 384 25 1 1011 2124 153 58 8 chr12 55930344 55930706 -65326824 + RLTR14 LTR ERV1 3 382 0 1 1011 739 78 0 0 chr12 55930726 55930828 -65326702 + B2_Mm2 SINE B2 6 107 -88 1 1011 28 71 0 0 chr12 55930897 55930953 -65326577 + AT_rich Low_complexity Low_complexity 1 56 0 1 1011 312 91 0 0 chr12 55930969 55931013 -65326517 - B3 SINE B2 -171 45 2 1 1011 502 60 0 0 chr12 55931031 55931098 -65326432 - B2_Mm1t SINE B2 -46 147 81 1 1011 611 112 92 0 chr12 55931143 55931241 -65326289 - B2_Mm2 SINE B2 -88 107 1 1 1011 24 0 0 0 chr12 55931241 55931265 -65326265 + AT_rich Low_complexity Low_complexity 1 24 0 1 1011 1373 84 10 5 chr12 55931266 55931458 -65326072 + B2_Mm1t SINE B2 1 193 0 1 1011 367 262 126 37 chr12 55931467 55931482 -65326048 + ID_B1 SINE B4 78 224 0 1 1011 549 161 167 17 chr12 55931482 55931602 -65325928 + B1_Mur4 SINE Alu 13 150 0 1 1011 27 0 0 0 chr12 55931890 55931917 -65325613 + AT_rich Low_complexity Low_complexity 1 27 0 1 1011 257 254 28 116 chr12 55931970 55932101 -65325429 + PB1D7 SINE Alu 2 119 -1 1 1011 1172 55 0 20 chr12 55932104 55932253 -65325277 + B1_Mus2 SINE Alu 2 147 0 1 1011 207 0 0 0 chr12 55932255 55932278 -65325252 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1011 264 211 0 0 chr12 55932434 55932505 -65325025 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1011 364 222 48 39 chr12 55932521 55932624 -65324906 + PB1D10 SINE Alu 3 106 -11 1 1011 925 230 97 101 chr12 55932643 55932951 -65324579 + L1MC1 LINE L1 5739 6027 -306 1 1011 1026 46 14 34 chr12 55932951 55933244 -65324286 + (TCTA)n Simple_repeat Simple_repeat 1 287 0 1 1011 925 230 97 101 chr12 55933244 55933481 -65324049 + L1MC1 LINE L1 6028 6282 -51 1 1011 216 261 138 76 chr12 55933494 55933639 -65323891 + B4 SINE B4 67 220 -72 1 1011 425 269 92 0 chr12 55933515 55933645 -65323885 + B1_Mus2 SINE Alu 6 147 0 1 1011 676 182 6 154 chr12 55933665 55933754 -65323776 - B1_Mur4 SINE Alu 0 150 71 1 1011 1393 71 16 0 chr12 55933754 55933938 -65323592 - B2_Mm1t SINE B2 -5 188 2 1 1011 676 182 6 154 chr12 55933938 55934023 -65323507 - B1_Mur4 SINE Alu -80 70 2 1 1011 1328 66 21 32 chr12 55934032 55934221 -65323309 - B2_Mm2 SINE B2 -7 188 2 1 1011 1397 99 5 0 chr12 55934241 55934433 -65323097 - B2_Mm1t SINE B2 0 193 1 1 1011 1183 50 0 0 chr12 55934575 55934715 -65322815 - B1_Mus2 SINE Alu -6 141 2 1 1011 203 221 29 0 chr12 55935570 55935638 -65321892 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1011 423 216 20 10 chr12 55936430 55936528 -65321002 - ID_B1 SINE B4 0 224 126 1 1011 636 271 7 0 chr12 55936658 55936798 -65320732 - RSINE1 SINE B4 -4 161 21 1 1011 201 114 0 0 chr12 55936823 55936842 -65320688 + (T)n Simple_repeat Simple_repeat 1 19 0 1 1011 1166 68 0 20 chr12 55936842 55936992 -65320538 - B1_Mus2 SINE Alu 0 147 1 1 1011 201 114 0 0 chr12 55936992 55937007 -65320523 + (T)n Simple_repeat Simple_repeat 1 15 0 1 1011 414 266 97 70 chr12 55937007 55937193 -65320337 - B3A SINE B2 0 195 5 1 1011 291 270 71 9 chr12 55937255 55937367 -65320163 - MLT1L LTR MaLR -113 497 379 1 1011 359 228 41 52 chr12 55937833 55937930 -65319600 - B3 SINE B2 -1 215 120 1 1011 228 152 22 0 chr12 55938111 55938157 -65319373 - B1_Mur3 SINE Alu -21 128 82 1 1011 254 50 0 24 chr12 55938180 55938221 -65319309 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1011 646 124 8 74 chr12 55938221 55938343 -65319187 - B1_Mur3 SINE Alu -13 136 23 1 1011 299 289 100 36 chr12 55938925 55939065 -65318465 - RSINE1 SINE B4 0 165 17 1 1011 223 301 86 50 chr12 55939153 55939293 -65318237 - B4A SINE B4 -80 212 68 1 1011 2541 60 25 0 chr12 55939654 55939973 -65317557 + ORR1A2 LTR MaLR 1 327 0 1 1011 1976 125 15 21 chr12 55940113 55940439 -65317091 - ORR1A4 LTR MaLR 0 329 6 1 1011 5328 195 73 71 chr12 55940443 55942162 -65315368 - ORR1A4-int LTR MaLR 0 1963 349 1 1011 1357 101 11 0 chr12 55942162 55942350 -65315180 - B2_Mm1a SINE B2 -1 192 3 1 1011 5328 196 70 77 chr12 55942350 55942674 -65314856 - ORR1A4-int LTR MaLR -1615 348 7 1 1011 1919 138 21 27 chr12 55942679 55943007 -65314523 - ORR1A4 LTR MaLR -2 327 2 1 1011 831 178 0 0 chr12 55943007 55943136 -65314394 - B1_Mus1 SINE Alu -15 133 5 1 1011 471 278 227 0 chr12 55943646 55943822 -65313708 - ID_B1 SINE B4 -4 220 5 1 1011 298 289 9 63 chr12 55943841 55943952 -65313578 - ID_B1 SINE B4 -18 206 102 1 1011 279 226 32 0 chr12 55944042 55944104 -65313426 - ID4 SINE ID -19 64 1 1 1011 221 276 211 0 chr12 55944607 55944683 -65312847 - B1F1 SINE Alu -48 101 10 1 1011 1197 48 7 0 chr12 55944713 55944859 -65312671 - B1_Mus1 SINE Alu 0 148 2 1 1011 1136 23 0 0 chr12 55945126 55945255 -65312275 + B1_Mus1 SINE Alu 1 129 -19 1 1011 713 191 41 28 chr12 55945647 55945792 -65311738 - B1_Mur1 SINE Alu -1 148 2 1 1011 3252 58 0 8 chr12 55945802 55946201 -65311329 + MTA_Mm LTR MaLR 1 396 0 1 1011 1348 81 17 0 chr12 55946240 55946414 -65311116 + B2_Mm2 SINE B2 1 177 -18 1 1011 488 279 6 83 chr12 55946574 55946742 -65310788 + B3A SINE B2 42 196 -2 1 1011 21 0 0 0 chr12 55946774 55946795 -65310735 + AT_rich Low_complexity Low_complexity 1 21 0 1 1011 356 83 0 0 chr12 55946808 55946856 -65310674 - ORR1A4 LTR MaLR -8 359 312 1 1011 774 164 258 0 chr12 55946871 55947034 -65310496 - B3 SINE B2 -10 206 2 1 1011 791 134 94 0 chr12 55947034 55947183 -65310347 - ORR1A4 LTR MaLR -39 290 128 1 1011 303 145 0 0 chr12 55947207 55947261 -65310269 - ORR1A4 LTR MaLR -347 47 1 1 1011 482 231 16 24 chr12 55947278 55947402 -65310128 - B1_Mur1 SINE Alu -5 144 22 1 1011 555 174 0 0 chr12 55947435 55947550 -65309980 + (TATG)n Simple_repeat Simple_repeat 4 118 0 1 1011 869 179 14 0 chr12 55947556 55947701 -65309829 - B1_Mur4 SINE Alu -1 149 3 1 1011 540 0 0 0 chr12 55947704 55947764 -65309766 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1011 977 177 87 43 chr12 55947768 55947975 -65309555 + B3 SINE B2 1 216 0 1 1011 736 201 237 0 chr12 55947995 55948164 -65309366 + B3 SINE B2 2 210 -6 1 1011 194 0 39 0 chr12 55948183 55948209 -65309321 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 1011 270 0 0 0 chr12 55948209 55948239 -65309291 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 1011 1092 42 0 106 chr12 55948239 55948400 -65309130 - B1_Mus2 SINE Alu -1 146 3 1 1011 359 259 191 7 chr12 55948421 55948439 -65309091 - B3A SINE B2 -37 161 144 1 1011 522 0 0 0 chr12 55948439 55948497 -65309033 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1011 359 259 191 7 chr12 55948497 55948614 -65308916 - B3A SINE B2 -55 143 1 1 1011 400 179 60 50 chr12 55948648 55948748 -65308782 + PB1D10 SINE Alu 2 102 -15 1 1011 300 154 0 0 chr12 55948765 55948817 -65308713 + GA-rich Low_complexity Low_complexity 3 54 0 1 1011 450 336 60 0 chr12 55948840 55948989 -65308541 + RSINE1 SINE B4 2 159 -6 1 1011 618 228 51 148 chr12 55949039 55949134 -65308396 + B4A SINE B4 1 82 -210 1 1011 737 207 21 21 chr12 55949134 55949277 -65308253 + B1_Mur4 SINE Alu 2 144 -6 1 1011 618 228 51 148 chr12 55949277 55949438 -65308092 + B4A SINE B4 83 232 -60 1 1011 681 244 156 11 chr12 55949442 55949628 -65307902 + B3 SINE B2 4 216 0 1 1011 868 185 0 7 chr12 55949642 55949789 -65307741 + B1_Mur1 SINE Alu 1 146 -3 1 1011 421 128 12 37 chr12 55950542 55950623 -65306907 + B1_Mm SINE Alu 68 146 -1 1 1011 1401 212 20 149 chr12 55950632 55951169 -65306361 - Lx7 LINE L1 -16 7680 7213 1 1011 285 180 0 0 chr12 55951178 55951228 -65306302 - Lx7 LINE L1 -641 7055 7006 1 1011 1482 63 11 0 chr12 55952211 55952401 -65305129 + B2_Mm1a SINE B2 1 192 -1 1 1011 426 234 158 24 chr12 55952402 55952529 -65305001 + ID_B1 SINE B4 81 224 0 1 1011 2213 89 41 0 chr12 55952534 55952850 -65304680 - ORR1A4 LTR MaLR 0 329 1 1 1011 876 124 0 0 chr12 55952891 55953013 -65304517 + B1_Mus1 SINE Alu 14 135 -13 1 1011 263 26 0 49 chr12 55953013 55953054 -65304476 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 1 1011 338 235 253 0 chr12 55953060 55953226 -65304304 - B3 SINE B2 -6 210 3 1 1011 231 61 0 0 chr12 55953229 55953262 -65304268 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 1 1011 456 125 12 48 chr12 55953264 55953348 -65304182 - B1_Mur3 SINE Alu -10 139 59 1 1011 21 36 0 0 chr12 55953382 55953410 -65304120 + AT_rich Low_complexity Low_complexity 1 28 0 1 1011 422 317 28 0 chr12 55953410 55953552 -65303978 - RSINE1 SINE B4 -2 163 18 1 1011 369 77 0 0 chr12 55953536 55953588 -65303942 - B1_Mus2 SINE Alu -95 52 1 1 1011 228 114 0 0 chr12 55953558 55953593 -65303937 - MT2B LTR ERVL -314 287 253 1 1011 304 311 86 19 chr12 55953849 55953954 -65303576 - PB1D10 SINE Alu -5 112 1 1 1011 341 260 0 14 chr12 55953983 55954057 -65303473 - RSINE1 SINE B4 -32 133 61 1 1011 680 101 19 45 chr12 55954200 55954355 -65303175 + CT-rich Low_complexity Low_complexity 2 152 0 1 1011 1181 49 14 0 chr12 55954355 55954499 -65303031 - B1_Mus1 SINE Alu 0 148 3 1 1011 639 226 20 7 chr12 55954502 55954649 -65302881 - B1F2 SINE Alu 0 149 1 1 1011 400 193 23 5 chr12 55954658 55954758 -65302772 - L1MD LINE L1 -3714 2432 2334 1 1011 379 127 0 53 chr12 55954786 55954861 -65302669 + B1_Mur4 SINE Alu 79 149 -1 1 1011 26 0 0 0 chr12 55954947 55954973 -65302557 + AT_rich Low_complexity Low_complexity 1 26 0 1 1011 682 206 14 22 chr12 55954979 55955118 -65302412 + B1_Mur1 SINE Alu 5 142 -7 1 1011 1193 56 0 0 chr12 55955131 55955275 -65302255 + B1_Mus1 SINE Alu 5 148 0 1 1011 317 266 8 124 chr12 55955338 55955467 -65302063 - PB1D10 SINE Alu -3 114 1 1 1011 1233 100 38 22 chr12 55955499 55955683 -65301847 - B2_Mm2 SINE B2 -7 188 2 1 1011 323 259 51 85 chr12 55955769 55955887 -65301643 - B1F2 SINE Alu 0 149 36 1 1011 374 252 98 15 chr12 55955964 55956097 -65301433 - MLT1A0 LTR MaLR -48 317 174 1 1011 1202 62 0 0 chr12 55956455 55956599 -65300931 + B1_Mus2 SINE Alu 4 147 0 1 1011 1431 70 27 0 chr12 55957163 55957350 -65300180 + B2_Mm1t SINE B2 2 193 0 1 1011 651 205 38 0 chr12 55957533 55957672 -65299858 - B1_Mur4 SINE Alu -2 148 1 1 1011 272 247 110 0 chr12 55957610 55957683 -65299847 - B4 SINE B4 -142 150 70 1 1011 561 189 75 0 chr12 55957707 55957813 -65299717 - RSINE1 SINE B4 -36 129 16 1 1011 417 236 337 12 chr12 55957891 55958054 -65299476 - ID_B1 SINE B4 -5 219 4 1 1011 271 208 0 0 chr12 55958203 55958251 -65299279 - ID_B1 SINE B4 0 224 177 1 1011 240 179 89 0 chr12 55958258 55958314 -65299216 + B1F1 SINE Alu 89 149 0 1 1011 293 276 37 37 chr12 55958395 55958504 -65299026 + PB1D10 SINE Alu 1 109 -8 1 1011 505 282 7 14 chr12 55958509 55958653 -65298877 + ID_B1 SINE B4 81 223 -1 1 1011 431 273 182 21 chr12 55958800 55958987 -65298543 - B4A SINE B4 0 292 76 1 1011 314 250 0 88 chr12 55959122 55959148 -65298382 - B4A SINE B4 -131 161 100 1 1011 335 207 0 0 chr12 55959148 55959206 -65298324 - B1F1 SINE Alu -91 58 1 1 1011 701 250 114 0 chr12 55959250 55959434 -65298096 + B3 SINE B2 6 210 -6 1 1011 1020 36 7 21 chr12 55959444 55959587 -65297943 - B1_Mus1 SINE Alu 0 148 8 1 1011 533 226 126 58 chr12 55959450 55959657 -65297873 - B4 SINE B4 -69 223 3 1 1011 24 0 0 0 chr12 55962275 55962299 -65295231 + AT_rich Low_complexity Low_complexity 1 24 0 1 1011 182 116 23 0 chr12 55963858 55963901 -65293629 + (CGGG)n Simple_repeat Simple_repeat 1 44 0 1 1011 365 279 53 30 chr12 55964254 55964387 -65293143 - ID_B1 SINE B4 -10 214 79 1 1011 450 108 0 0 chr12 55964697 55964780 -65292750 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 1011 335 232 43 0 chr12 55964791 55964860 -65292670 - RSINE1 SINE B4 -57 108 37 1 1011 323 280 49 83 chr12 55964846 55964990 -65292540 + B3A SINE B2 56 194 -4 1 1011 271 204 41 148 chr12 55964995 55965152 -65292378 - B3A SINE B2 0 216 70 1 1011 1119 119 0 0 chr12 55965182 55965350 -65292180 - B2_Mm2 SINE B2 -26 169 2 1 1011 455 107 0 0 chr12 55965383 55965458 -65292072 + Lx4A LINE L1 6984 7058 0 1 1011 1062 63 28 0 chr12 55965483 55965626 -65291904 + B1_Mus1 SINE Alu 2 148 0 1 1011 4366 45 4 4 chr12 55965637 55966170 -65291360 + L1Md_F2 LINE L1 6038 6570 -12 1 1011 624 138 62 54 chr12 55966293 55966305 -65291225 - B1_Mur1 SINE Alu -2 147 138 1 1011 705 82 0 0 chr12 55966305 55966402 -65291128 + (TTTA)n Simple_repeat Simple_repeat 2 98 0 1 1011 624 138 62 54 chr12 55966402 55966519 -65291011 - B1_Mur1 SINE Alu -12 137 17 1 1011 589 299 57 18 chr12 55966593 55966876 -65290654 - L1M2 LINE L1 -967 5176 4883 1 1011 850 178 144 0 chr12 55966913 55967093 -65290437 - B3 SINE B2 -3 213 8 1 1011 343 234 119 16 chr12 55967249 55967375 -65290155 - L1M2 LINE L1 -1501 4639 4501 1 1011 280 257 58 128 chr12 55967402 55967471 -65290059 + MT2B LTR ERVL 94 238 -363 1 1011 422 152 0 92 chr12 55967471 55967558 -65289972 + B1_Mus2 SINE Alu 3 81 -66 1 126 764 245 77 0 chr12 55967609 55967805 -65289725 - B3 SINE B2 -5 211 1 1 1012 750 221 102 31 chr12 55967826 55967980 -65289550 - B3 SINE B2 -6 210 41 1 1012 2118 123 11 66 chr12 55967980 55968328 -65289202 - ORR1A4 LTR MaLR 0 329 1 1 1012 750 221 102 31 chr12 55968328 55968369 -65289161 - B3 SINE B2 -176 40 1 1 1012 2672 172 18 0 chr12 55968395 55968837 -65288693 - Lx5 LINE L1 0 7050 6601 1 1012 360 0 0 0 chr12 55968841 55968881 -65288649 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1012 803 78 163 0 chr12 55968899 55969028 -65288502 - B2_Mm2 SINE B2 -44 151 2 1 1012 318 143 0 0 chr12 55969398 55969461 -65288069 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 1 1012 1053 76 14 14 chr12 55969478 55969625 -65287905 + B1_Mus2 SINE Alu 1 147 0 1 1012 612 146 0 0 chr12 55969625 55969728 -65287802 + (A)n Simple_repeat Simple_repeat 1 103 0 1 1012 252 0 0 0 chr12 55969761 55969789 -65287741 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1012 342 0 0 0 chr12 55969836 55969874 -65287656 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1 1012 1128 76 14 0 chr12 55969875 55970019 -65287511 - B1_Mus1 SINE Alu -1 147 2 1 1012 1538 37 32 0 chr12 55970069 55970256 -65287274 - B2_Mm1a SINE B2 0 193 1 1 1012 566 189 19 0 chr12 55970260 55970366 -65287164 - B1_Mur1 SINE Alu -2 147 40 1 1012 1254 98 17 0 chr12 55970411 55970585 -65286945 + B2_Mm1t SINE B2 3 179 -14 1 1012 1543 43 5 0 chr12 55970591 55970776 -65286754 - B2_Mm1t SINE B2 -6 187 2 1 1012 524 242 16 8 chr12 55970917 55971057 -65286473 + B1F SINE Alu 1 141 -8 1 1012 300 308 81 53 chr12 55971110 55971319 -65286211 - B3 SINE B2 -1 215 1 1 1012 519 272 66 0 chr12 55971338 55971474 -65286056 - ID_B1 SINE B4 0 224 80 1 1012 761 173 0 0 chr12 55971517 55971650 -65285880 - B1_Mur2 SINE Alu -7 142 10 1 1012 514 266 90 0 chr12 55971731 55971919 -65285611 + L1MB7 LINE L1 5711 5915 -269 1 1012 509 49 0 0 chr12 55971920 55971981 -65285549 - IAPEz-int LTR ERVK -5062 1419 1359 1 1012 3577 97 36 49 chr12 55971981 55972790 -65284740 - IAPEz-int LTR ERVK -5819 662 9 1 1012 2409 95 79 28 chr12 55972791 55973182 -65284348 - IAPLTR2a LTR ERVK 0 411 1 1 1012 447 216 104 16 chr12 55973209 55973407 -65284123 + L1MB7 LINE L1 5958 6182 -2 1 1012 250 128 64 0 chr12 55973417 55973464 -65284066 + B2_Mm2 SINE B2 1 50 -145 1 1012 901 286 61 19 chr12 55973486 55973846 -65283684 - RLTR18B LTR ERVK 0 512 138 1 1012 456 253 72 176 chr12 55973815 55973861 -65283669 - RLTR18B LTR ERVK -306 310 270 1 1012 1337 87 11 0 chr12 55973861 55974045 -65283485 + B2_Mm1t SINE B2 2 187 -6 1 1012 456 253 72 176 chr12 55974045 55974344 -65283186 - RLTR18B LTR ERVK -347 269 1 1 1012 1470 168 105 6 chr12 55974399 55974740 -65282790 + ORR1C1 LTR MaLR 1 420 -1 1 1012 200 143 0 23 chr12 55974804 55974847 -65282683 + GA-rich Low_complexity Low_complexity 4 45 0 1 1012 235 143 48 0 chr12 55974906 55974920 -65282610 + MT2B2 LTR ERVL 244 259 -325 1 1012 327 250 101 50 chr12 55974920 55974993 -65282537 + B1F1 SINE Alu 1 78 -71 1 1012 1352 73 15 50 chr12 55974993 55975195 -65282335 + B2_Mm2 SINE B2 1 195 0 1 1012 383 187 20 108 chr12 55975195 55975221 -65282309 + ID_B1 SINE B4 148 172 -52 1 1012 327 250 101 50 chr12 55975221 55975260 -65282270 + B1F1 SINE Alu 79 145 -4 1 1012 1137 55 18 12 chr12 55975399 55975565 -65281965 + (TCTCC)n Simple_repeat Simple_repeat 5 171 0 1 1012 471 18 0 0 chr12 55975565 55975621 -65281909 + (TTTTC)n Simple_repeat Simple_repeat 5 60 0 1 1012 560 226 89 0 chr12 55975635 55975759 -65281771 - B1F SINE Alu -10 139 5 1 1012 456 191 30 60 chr12 55976171 55976305 -65281225 + B1_Mus2 SINE Alu 11 140 -7 1 1012 325 158 0 17 chr12 55976327 55976385 -65281145 + B3A SINE B2 2 58 -140 1 1012 1919 118 12 57 chr12 55976450 55976493 -65281037 - ORR1A2 LTR MaLR -8 319 285 1 1012 1365 62 62 0 chr12 55976493 55976670 -65280860 - B2_Mm2 SINE B2 -5 190 3 1 1012 207 0 0 0 chr12 55976674 55976697 -65280833 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1012 873 91 132 0 chr12 55976697 55976818 -65280712 - B1_Mm SINE Alu -10 137 1 1 1012 1919 118 12 57 chr12 55976818 55977102 -65280428 - ORR1A2 LTR MaLR -43 284 2 1 1012 349 257 68 68 chr12 55977148 55977294 -65280236 - L1M4 LINE L1 -610 5568 5423 1 1012 336 276 204 19 chr12 55977285 55977597 -65279933 - Lx9 LINE L1 -1 7472 7109 1 1012 1114 225 198 38 chr12 55977605 55977749 -65279781 + RMER4B LTR ERVK 1 150 -435 1 1012 1125 97 47 21 chr12 55977749 55977939 -65279591 - B2_Mm2 SINE B2 0 195 1 1 1012 1114 225 198 38 chr12 55977939 55978298 -65279232 + RMER4B LTR ERVK 151 585 0 1 1012 558 261 216 7 chr12 55978335 55978617 -65278913 - Lx9 LINE L1 -649 6995 6655 1 1012 779 154 92 0 chr12 55978630 55978760 -65278770 - B1_Mm SINE Alu -1 146 5 1 1012 348 193 30 16 chr12 55978764 55978838 -65278692 - Lx9 LINE L1 -1233 6411 6341 1 1012 279 0 0 0 chr12 55978838 55978869 -65278661 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1012 282 277 55 55 chr12 55978869 55978939 -65278591 - Lx9 LINE L1 -1277 6196 6127 1 1012 449 270 52 1 chr12 55979039 55979164 -65278366 - B1F SINE Alu -12 137 9 1 1012 1315 92 6 0 chr12 55979240 55979413 -65278117 + B2_Mm1a SINE B2 2 175 -18 1 1012 835 230 44 44 chr12 55979434 55979639 -65277891 - B3A SINE B2 -5 211 7 1 1012 1197 54 7 0 chr12 55979680 55979827 -65277703 - B1_Mus1 SINE Alu 0 148 1 1 1012 485 187 58 80 chr12 55979869 55980048 -65277482 - B1_Mur1 SINE Alu 0 149 2 1 1012 231 238 101 37 chr12 55980137 55980246 -65277284 + PB1D10 SINE Alu 2 117 0 1 1012 296 327 38 19 chr12 55980249 55980355 -65277175 - L2b LINE L2 -23 3352 3245 1 1012 441 296 115 11 chr12 55980623 55980797 -65276733 - B3A SINE B2 -5 193 2 1 1012 236 120 160 0 chr12 55980801 55980851 -65276679 + MER119 DNA MER1_type 73 130 -453 1 1012 7134 170 39 47 chr12 55980888 55982516 -65275014 - Lx5 LINE L1 0 7050 5436 1 1012 247 260 92 104 chr12 55982547 55982699 -65274831 + MER119 DNA MER1_type 226 375 -208 1 1012 1239 54 0 0 chr12 55982699 55982847 -65274683 + B1_Mus1 SINE Alu 1 148 0 1 1012 1642 26 0 20 chr12 55983091 55983287 -65274243 - B2_Mm1a SINE B2 0 193 2 1 1012 898 238 19 24 chr12 55983382 55983589 -65273941 + B3 SINE B2 1 206 -10 1 1012 743 242 75 5 chr12 55983694 55983893 -65273637 + Lx8 LINE L1 5628 5840 -7 1 1012 1220 198 118 17 chr12 55984176 55984464 -65273066 + ORR1D1 LTR MaLR 1 317 -57 1 1012 445 71 158 5 chr12 55984496 55984597 -65272933 - B2_Mm2 SINE B2 -14 181 46 1 1012 1250 69 22 33 chr12 55984625 55984805 -65272725 - B2_Mm1t SINE B2 -14 179 2 1 1012 285 102 203 0 chr12 55984806 55984865 -65272665 + ORR1D1 LTR MaLR 314 384 0 1 1012 618 198 48 0 chr12 55984964 55985090 -65272440 + B1_Mur1 SINE Alu 17 148 -1 1 1012 1183 62 7 0 chr12 55985156 55985301 -65272229 + B1_Mus1 SINE Alu 2 147 -1 1 1012 565 198 0 0 chr12 55985329 55985440 -65272090 - B3 SINE B2 -79 137 27 1 1012 3016 262 78 31 chr12 55985461 55985506 -65272024 + Lx8 LINE L1 6419 6463 -1010 1 1012 1870 153 107 28 chr12 55985506 55985862 -65271668 + ORR1C2 LTR MaLR 1 384 0 1 1012 3016 262 78 31 chr12 55985862 55986645 -65270885 + Lx8 LINE L1 6464 7294 -179 1 1012 4453 123 29 32 chr12 55986645 55987403 -65270127 - RMER6A LTR ERVK 0 756 1 1 1012 3016 262 78 31 chr12 55987403 55987500 -65270030 + Lx8 LINE L1 7295 7388 -85 1 1012 1627 147 54 107 chr12 55987591 55987803 -65269727 - ORR1B1 LTR MaLR -2 392 178 1 1012 1158 63 0 14 chr12 55987803 55987947 -65269583 - B1_Mus2 SINE Alu -1 146 5 1 1012 1627 147 54 107 chr12 55987947 55988107 -65269423 - ORR1B1 LTR MaLR -217 177 40 1 1012 1063 27 0 140 chr12 55988232 55988403 -65269127 + B1_Mus1 SINE Alu 2 148 0 1 1012 255 61 0 0 chr12 55988403 55988436 -65269094 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1012 389 244 56 0 chr12 55988436 55988526 -65269004 + B3 SINE B2 36 130 -86 1 1012 396 182 33 22 chr12 55988618 55988708 -65268822 + PB1D9 SINE Alu 1 91 -29 1 1012 759 125 290 0 chr12 55989165 55989352 -65268178 - RLTR13C1 LTR ERVK 0 1023 726 1 1012 664 79 40 0 chr12 55989338 55989439 -65268091 + B1_Mus2 SINE Alu 43 147 0 1 1012 1455 50 16 16 chr12 55989463 55989646 -65267884 + B2_Mm2 SINE B2 2 184 -11 1 1012 1805 227 122 81 chr12 55989909 55990700 -65266830 - RMER17B LTR ERVK -72 886 117 1 1012 215 211 0 0 chr12 55990666 55990704 -65266826 + B1F1 SINE Alu 95 132 -17 1 1012 533 177 140 44 chr12 55990718 55990854 -65266676 - B1_Mur4 SINE Alu 0 150 2 1 1012 539 185 0 18 chr12 55990969 55991079 -65266451 + PB1D9 SINE Alu 5 112 -8 1 1012 459 0 0 0 chr12 55991117 55991168 -65266362 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1012 2453 49 10 0 chr12 55991191 55991499 -65266031 - L1Md_F2 LINE L1 0 6582 6272 1 1012 590 234 75 69 chr12 55991524 55991712 -65265818 - B3A SINE B2 -8 190 2 1 1012 403 214 24 0 chr12 55991724 55991808 -65265722 - B1_Mm SINE Alu -56 91 6 1 1012 264 222 60 100 chr12 55991732 55991832 -65265698 - MT2B LTR ERVL -361 240 145 1 1012 335 308 137 0 chr12 55991839 55991956 -65265574 - RSINE1 SINE B4 -25 140 8 1 1012 611 288 7 14 chr12 55992476 55992624 -65264906 + B1F SINE Alu 2 148 -1 1 1012 275 132 75 0 chr12 55993376 55993429 -65264101 - ORR1D1 LTR MaLR -19 351 295 1 1012 782 163 20 13 chr12 55993963 55994112 -65263418 - B1_Mur4 SINE Alu 0 150 1 1 1012 283 258 54 0 chr12 55994113 55994206 -65263324 - ORR1D1 LTR MaLR -274 100 3 1 1012 414 228 0 52 chr12 55994208 55994305 -65263225 - PB1D10 SINE Alu -14 103 12 1 1012 22 70 0 0 chr12 55996556 55996599 -65260931 + AT_rich Low_complexity Low_complexity 1 43 0 1 1012 393 130 94 2 chr12 55996639 55996723 -65260807 + B3 SINE B2 13 105 -88 1 1012 1355 66 11 27 chr12 55996774 55996801 -65260729 - B2_Mm1t SINE B2 -9 184 161 1 1012 243 0 0 0 chr12 55996801 55996828 -65260702 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1012 1355 66 11 27 chr12 55996828 55996986 -65260544 - B2_Mm1t SINE B2 -33 160 2 1 1012 285 272 49 0 chr12 55997709 55997790 -65259740 + PB1D9 SINE Alu 5 89 -31 1 1012 558 231 75 0 chr12 55997974 55998108 -65259422 - RSINE1 SINE B4 -2 163 20 1 1012 550 77 0 0 chr12 55998106 55998184 -65259346 - B1_Mus1 SINE Alu -70 78 1 1 1012 1402 62 15 35 chr12 55998192 55998391 -65259139 - B2_Mm2 SINE B2 0 195 1 1 1012 728 176 7 0 chr12 55998418 55998554 -65258976 - B1_Mus2 SINE Alu 0 147 11 1 1012 335 268 36 12 chr12 55998784 55998867 -65258663 + B3A SINE B2 70 154 -44 1 1012 362 267 40 0 chr12 55998864 55998965 -65258565 + B4A SINE B4 5 109 -183 1 1012 330 162 134 24 chr12 55999121 55999203 -65258327 + RLTR25B LTR ERVK 419 509 -519 1 1012 697 90 0 0 chr12 55999141 55999241 -65258289 + B1_Mus2 SINE Alu 43 142 -5 1 1012 198 0 0 0 chr12 55999242 55999264 -65258266 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 1012 231 36 0 0 chr12 55999930 55999958 -65257572 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1012 436 294 24 32 chr12 56000341 56000464 -65257066 - B4A SINE B4 0 292 171 1 1012 610 110 42 6 chr12 56000487 56000609 -65256921 + B1_Mus1 SINE Alu 1 96 -21 2 1012 201 94 0 0 chr12 56001061 56001093 -65256437 + (CAT)n Simple_repeat Simple_repeat 3 34 0 3 1012 364 190 67 48 chr12 56001702 56001807 -65255723 + B1F SINE Alu 32 138 -11 4 1012 397 194 214 0 chr12 56002186 56002284 -65255246 + B1F SINE Alu 31 149 0 5 1012 872 65 195 0 chr12 56002319 56002442 -65255088 - B1_Mm SINE Alu 0 147 1 6 1012 414 0 0 0 chr12 56002453 56002499 -65255031 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 7 1012 244 281 94 0 chr12 56002561 56002625 -65254905 + RSINE1 SINE B4 83 152 -13 8 1012 1185 60 0 7 chr12 56002821 56002972 -65254558 + B2_Mm2 SINE B2 1 150 -45 9 1012 247 243 96 41 chr12 56003019 56003092 -65254438 + ID4 SINE ID 5 81 -2 1 1012 468 205 150 25 chr12 56003206 56003326 -65254204 - B1_Mur4 SINE Alu -13 137 3 1 1012 421 250 115 0 chr12 56003930 56004026 -65253504 - PB1D10 SINE Alu -1 116 10 1 1012 299 303 142 36 chr12 56004022 56004196 -65253334 - B4 SINE B4 -108 184 3 1 1012 360 301 118 46 chr12 56004646 56004799 -65252731 + RSINE1 SINE B4 2 165 0 1 1012 331 257 40 13 chr12 56005357 56005432 -65252098 - ID4_ SINE ID -4 79 3 1 1012 568 138 43 0 chr12 56005432 56005526 -65252004 - B1_Mur1 SINE Alu -9 140 43 1 1012 251 208 53 40 chr12 56005462 56005537 -65251993 - RLTR25B LTR ERVK -521 507 432 1 1012 342 0 0 0 chr12 56005552 56005590 -65251940 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1012 450 36 0 0 chr12 56005590 56005645 -65251885 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1012 453 329 6 62 chr12 56005698 56005860 -65251670 - RSINE1 SINE B4 -10 155 3 2 1012 449 218 28 56 chr12 56005882 56005989 -65251541 + PB1D10 SINE Alu 2 105 -12 2 1012 305 158 29 0 chr12 56006019 56006072 -65251458 - PB1D10 SINE Alu -32 95 34 2 1012 189 0 0 0 chr12 56006559 56006580 -65250950 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1012 745 259 156 99 chr12 56007174 56007774 -65249756 - MTC-int LTR MaLR -413 957 73 2 1012 379 183 164 9 chr12 56008080 56008196 -65249334 + B1F1 SINE Alu 6 139 -10 2 1012 254 268 27 40 chr12 56008212 56008286 -65249244 + ID4_ SINE ID 2 74 -9 2 1012 1413 143 4 30 chr12 56008501 56008731 -65248799 + URR1B DNA MER1_type 1 224 -1 2 1012 1042 244 9 5 chr12 56008755 56008969 -65248561 - B3 SINE B2 0 216 2 2 1012 681 222 24 0 chr12 56009097 56009223 -65248307 - B1_Mur1 SINE Alu -13 136 8 2 1012 368 131 66 0 chr12 56009440 56009501 -65248029 + ID4_ SINE ID 12 76 -7 3 1012 304 252 43 104 chr12 56009501 56009555 -65247975 + ID_B1 SINE B4 12 119 -105 3 1012 253 0 0 51 chr12 56009651 56009690 -65247840 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1012 473 269 89 12 chr12 56010589 56010758 -65246772 - B4 SINE B4 -109 183 2 3 1012 349 269 59 10 chr12 56011003 56011118 -65246412 - PB1D10 SINE Alu -13 136 1 3 1012 295 246 40 14 chr12 56011420 56011494 -65246036 - ID4 SINE ID -6 77 2 3 1012 458 312 62 31 chr12 56011539 56011818 -65245712 - RSINE1 SINE B4 -18 274 21 3 1012 1185 62 0 46 chr12 56012061 56012214 -65245316 - B1_Mus1 SINE Alu -1 147 2 3 1012 341 210 157 24 chr12 56012759 56012842 -65244688 - PB1D7 SINE Alu -20 100 7 3 1012 269 273 111 22 chr12 56012762 56012852 -65244678 - ID_B1 SINE B4 -49 175 78 3 1012 662 236 20 14 chr12 56012867 56013013 -65244517 - B1_Mm SINE Alu 0 147 1 4 1012 796 212 156 0 chr12 56013043 56013222 -65244308 - B3 SINE B2 -9 207 1 4 1012 1884 181 62 40 chr12 56013905 56014307 -65243223 - MTD LTR MaLR -8 411 1 4 1012 892 294 220 12 chr12 56014309 56014791 -65242739 + L1MB8 LINE L1 5254 5835 -2160 4 1012 344 343 20 41 chr12 56015049 56015195 -65242335 - B4 SINE B4 -148 144 2 4 1012 267 260 23 75 chr12 56015202 56015281 -65242249 + L1MB8 LINE L1 6032 6109 -69 4 1012 195 42 0 0 chr12 56015281 56015305 -65242225 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 4 1012 1104 92 0 0 chr12 56015309 56015440 -65242090 - B1_Mus2 SINE Alu -15 132 2 4 1012 267 260 23 75 chr12 56015440 56015488 -65242042 + L1MB8 LINE L1 6110 6156 -22 4 1012 2895 225 123 47 chr12 56015501 56015698 -65241832 + Lx6 LINE L1 6629 6833 -627 4 1012 395 210 154 88 chr12 56015698 56015834 -65241696 + B1_Mur3 SINE Alu 5 149 0 4 1012 2895 225 123 47 chr12 56015834 56016409 -65241121 + Lx6 LINE L1 6834 7460 0 4 1012 1294 41 0 0 chr12 56016412 56016559 -65240971 + B1_Mus2 SINE Alu 1 147 0 4 1012 195 100 0 0 chr12 56016559 56016589 -65240941 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1012 319 259 82 48 chr12 56016836 56016982 -65240548 + MLT2B5 LTR ERVL 65 215 -386 5 1012 247 282 128 123 chr12 56016838 56017081 -65240449 + MTEa LTR MaLR 56 299 -80 5 1012 399 246 14 116 chr12 56017266 56017303 -65240227 + MT2B LTR ERVL 133 154 -447 5 1012 717 190 73 0 chr12 56017303 56017440 -65240090 + B1_Mur3 SINE Alu 3 149 0 5 1012 299 217 105 145 chr12 56018109 56018233 -65239297 - PB1D9 SINE Alu 0 120 2 5 1012 434 211 105 9 chr12 56018253 56018358 -65239172 + B1_Mur4 SINE Alu 36 150 0 5 1012 570 208 356 6 chr12 56018636 56018796 -65238734 + B3 SINE B2 1 216 0 5 1012 383 191 238 0 chr12 56018824 56018908 -65238622 + B1_Mur1 SINE Alu 36 139 -10 5 1012 632 239 22 51 chr12 56018962 56019099 -65238431 + ID_B1 SINE B4 87 219 -5 5 1012 470 265 23 100 chr12 56019227 56019357 -65238173 + ID_B1 SINE B4 72 191 -33 6 1012 632 232 200 12 chr12 56019693 56019863 -65237667 - B3 SINE B2 -6 210 9 6 1012 482 231 106 0 chr12 56020176 56020280 -65237250 + B1F1 SINE Alu 1 115 -34 6 1012 387 301 58 14 chr12 56020280 56020313 -65237217 + ID_B1 SINE B4 82 224 0 6 1012 298 240 18 123 chr12 56020437 56020551 -65236979 + RSINE1 SINE B4 3 104 -61 6 1012 419 321 32 108 chr12 56020765 56020950 -65236580 + B4 SINE B4 50 220 -72 6 1012 794 160 16 0 chr12 56020826 56020951 -65236579 + B1_Mur2 SINE Alu 18 144 -5 6 1012 390 42 0 0 chr12 56020954 56021002 -65236528 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 6 1012 254 214 0 35 chr12 56021020 56021078 -65236452 - L1MB7 LINE L1 -44 6140 6085 6 1012 827 201 29 12 chr12 56021080 56021251 -65236279 + ORR1D1 LTR MaLR 1 174 -200 6 1012 328 296 37 0 chr12 56021354 56021435 -65236095 + ID_B1 SINE B4 81 164 -60 7 1012 553 178 118 8 chr12 56021587 56021706 -65235824 + B1_Mus2 SINE Alu 5 136 -11 7 1012 7914 55 8 8 chr12 56022187 56023278 -65234252 + L1_Mus1 LINE L1 5463 6553 -14 7 1012 787 207 14 7 chr12 56023700 56023841 -65233689 + B1_Mur2 SINE Alu 6 147 -2 7 1012 221 320 112 24 chr12 56025183 56025308 -65232222 + MIR3 SINE MIR 38 173 -35 7 1012 807 288 10 0 chr12 56025953 56026151 -65231379 - B3 SINE B2 -15 201 2 7 1012 465 217 40 80 chr12 56026283 56026408 -65231122 - PB1D9 SINE Alu 0 120 1 7 1012 328 279 112 33 chr12 56027053 56027205 -65230325 - RSINE1 SINE B4 0 165 2 7 1012 542 236 24 0 chr12 56027746 56027873 -65229657 - ID_B1 SINE B4 -31 193 64 7 1012 295 270 35 53 chr12 56028979 56029071 -65228459 + B1_Mur1 SINE Alu 47 148 -1 7 1012 265 261 115 42 chr12 56029668 56029764 -65227766 + MLT1F1 LTR MaLR 334 436 -133 8 1012 24 67 0 0 chr12 56029808 56029853 -65227677 + AT_rich Low_complexity Low_complexity 1 45 0 8 1012 1369 230 96 73 chr12 56030057 56030465 -65227065 + MTD LTR MaLR 1 417 -2 8 1012 218 329 71 0 chr12 56030915 56031000 -65226530 + B1F2 SINE Alu 1 91 -58 8 1012 567 207 8 41 chr12 56031042 56031163 -65226367 - PB1D9 SINE Alu -2 118 2 8 1012 535 284 148 10 chr12 56031415 56031611 -65225919 + ID_B1 SINE B4 1 223 -1 8 1012 611 184 8 42 chr12 56031622 56031741 -65225789 - B3 SINE B2 -100 116 2 8 1012 23 0 0 0 chr12 56031896 56031919 -65225611 + AT_rich Low_complexity Low_complexity 1 23 0 8 1012 500 310 81 12 chr12 56031920 56032080 -65225450 - B3 SINE B2 -14 202 32 8 1012 1643 47 16 0 chr12 56032080 56032270 -65225260 + B2_Mm2 SINE B2 1 193 -2 8 1012 537 104 128 28 chr12 56032294 56032403 -65225127 + B1_Mur4 SINE Alu 31 150 0 9 1012 411 203 14 0 chr12 56032477 56032551 -65224979 + B3 SINE B2 1 75 -141 9 1012 197 31 0 86 chr12 56032560 56032595 -65224935 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1012 2645 142 18 81 chr12 56032603 56033100 -65224430 + L1VL1 LINE L1 193 658 -5764 9 1012 7897 98 26 10 chr12 56033130 56034487 -65223043 + L1_Mm LINE L1 2388 3715 -2168 9 1012 5022 79 8 9 chr12 56034487 56035137 -65222393 + L1_Mus3 LINE L1 5989 6637 -1 9 1012 207 114 0 0 chr12 56035152 56035187 -65222343 + (CAA)n Simple_repeat Simple_repeat 2 36 0 9 1012 242 310 147 20 chr12 56035267 56035369 -65222161 + B3 SINE B2 77 191 -25 9 1012 896 84 59 0 chr12 56035375 56035516 -65222014 + B2_Mm2 SINE B2 42 190 -5 9 1012 849 174 131 27 chr12 56035520 56035703 -65221827 - B3 SINE B2 -6 210 9 9 1012 278 348 0 17 chr12 56035726 56035843 -65221687 + T-rich Low_complexity Low_complexity 2 116 0 1 1012 406 208 8 94 chr12 56037081 56037198 -65220332 - B1F2 SINE Alu 0 149 43 1 1012 2054 44 55 0 chr12 56037384 56037655 -65219875 + MT2C_Mm LTR ERVL 1 286 -189 1 1012 299 0 0 0 chr12 56037652 56037686 -65219844 + MT2_Mm LTR ERVL 460 493 0 1 1012 326 73 0 0 chr12 56037962 56038003 -65219527 - ORR1A2 LTR MaLR -8 318 278 1 1012 186 43 0 0 chr12 56038003 56038026 -65219504 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1012 3326 71 34 14 chr12 56038055 56038498 -65219032 - Lx3_Mus LINE L1 -9 7000 6549 1 1012 1893 96 18 11 chr12 56038505 56038828 -65218702 - ORR1A2 LTR MaLR -39 307 1 1 1012 11738 125 63 18 chr12 56038828 56038871 -65218659 - ORR1A2-int LTR MaLR 0 1963 1928 1 1012 1532 65 5 5 chr12 56038871 56039058 -65218472 + B2_Mm1t SINE B2 1 187 -6 1 1012 11738 125 63 18 chr12 56039058 56040891 -65216639 - ORR1A2-int LTR MaLR -36 1927 1 1 1012 2232 130 9 0 chr12 56040891 56041215 -65216315 - ORR1A2 LTR MaLR 0 327 1 1 1012 23 0 0 0 chr12 56041709 56041732 -65215798 + AT_rich Low_complexity Low_complexity 1 23 0 1 1012 766 172 138 19 chr12 56041876 56042036 -65215494 - ORR1C2 LTR MaLR 0 384 206 1 1012 478 120 6 0 chr12 56042055 56042130 -65215400 - ORR1C2 LTR MaLR -289 81 3 1 1012 251 339 181 9 chr12 56042827 56042943 -65214587 + ID_B1 SINE B4 82 217 -7 1 1012 277 229 131 103 chr12 56043070 56043177 -65214353 - B3A SINE B2 -84 114 5 1 1012 522 43 0 0 chr12 56043234 56043303 -65214227 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1012 317 272 12 0 chr12 56043303 56043384 -65214146 - B1_Mur1 SINE Alu -1 148 67 1 1012 945 270 25 0 chr12 56043589 56043793 -65213737 - B3 SINE B2 -7 209 1 1 1012 1621 57 0 15 chr12 56043918 56044113 -65213417 - B2_Mm1t SINE B2 -1 192 1 1 1012 801 153 0 0 chr12 56044355 56044512 -65213018 + (TA)n Simple_repeat Simple_repeat 2 158 0 1 1012 25 75 0 0 chr12 56045322 56045375 -65212155 + AT_rich Low_complexity Low_complexity 1 53 0 1 1012 1245 68 0 0 chr12 56045549 56045696 -65211834 - B1_Mus2 SINE Alu 0 147 1 1 1012 640 218 171 11 chr12 56046277 56046458 -65211072 + B3 SINE B2 1 210 -6 1 1012 1528 70 0 5 chr12 56046570 56046758 -65210772 + L1_Mus1 LINE L1 6381 6567 0 1 1012 541 232 123 53 chr12 56047006 56047193 -65210337 + RMER30 DNA MER1_type 2 201 -1 1 1012 538 272 101 7 chr12 56047273 56047421 -65210109 + RSINE1 SINE B4 3 164 -1 1 1012 216 0 0 0 chr12 56047446 56047470 -65210060 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1 1012 552 175 108 0 chr12 56047496 56047616 -65209914 + B1_Mur3 SINE Alu 9 141 -8 1 1012 407 178 0 14 chr12 56047996 56048070 -65209460 - PB1D9 SINE Alu 0 120 48 1 1012 677 240 61 123 chr12 56048310 56048538 -65208992 - ID_B1 SINE B4 -9 215 2 1 1012 280 291 27 18 chr12 56048586 56048698 -65208832 + ID_B1 SINE B4 81 193 -31 1 1012 592 206 106 8 chr12 56049773 56049905 -65207625 + B1_Mur2 SINE Alu 3 147 -2 1 1012 517 259 113 77 chr12 56049929 56050176 -65207354 + MER2 DNA MER2_type 89 344 -1 1 1012 237 192 19 0 chr12 56050212 56050264 -65207266 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1012 456 187 117 36 chr12 56050584 56050695 -65206835 + RSINE1 SINE B4 11 130 -35 1 1012 526 261 41 27 chr12 56050808 56050954 -65206576 + B1F SINE Alu 1 148 -1 1 1012 812 220 18 83 chr12 56051222 56051450 -65206080 + B3 SINE B2 1 213 -3 1 1012 530 269 0 25 chr12 56051907 56052029 -65205501 + PB1D9 SINE Alu 1 119 -1 1 1012 569 254 78 5 chr12 56052145 56052322 -65205208 + B3 SINE B2 1 190 -5 1 1012 595 111 11 0 chr12 56052499 56052589 -65204941 + ORR1B1 LTR MaLR 304 394 0 1 1012 361 98 0 0 chr12 56052590 56052641 -65204889 + ORR1B1-int LTR MaLR 2 52 -1457 1 1012 1609 214 118 40 chr12 56052637 56053133 -65204397 + ORR1B1-int LTR MaLR 277 874 -1089 1 1012 198 0 0 0 chr12 56053133 56053155 -65204375 + (TGG)n Simple_repeat Simple_repeat 2 23 0 1 1012 1187 254 256 113 chr12 56053155 56053513 -65204017 + ORR1B1-int LTR MaLR 875 1345 -618 1 1012 477 0 0 0 chr12 56053513 56053566 -65203964 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1012 1187 254 256 113 chr12 56053566 56053607 -65203923 + ORR1B1-int LTR MaLR 1346 1395 -568 1 1012 387 0 0 0 chr12 56053607 56053650 -65203880 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1012 1187 254 256 113 chr12 56053650 56053691 -65203839 + ORR1B1-int LTR MaLR 1396 1473 -490 1 1012 423 0 0 0 chr12 56053691 56053738 -65203792 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1012 2826 148 86 3 chr12 56053738 56054251 -65203279 + ORR1B1-int LTR MaLR 968 1908 -55 1 1012 1092 282 36 25 chr12 56054311 56054591 -65202939 + B4 SINE B4 6 288 -4 1 1012 21 0 0 0 chr12 56054628 56054649 -65202881 + AT_rich Low_complexity Low_complexity 1 21 0 1 1012 290 292 98 15 chr12 56054663 56054795 -65202735 + L1MC1 LINE L1 5601 5743 -601 1 1012 785 119 16 25 chr12 56054796 56054917 -65202613 + B1_Mur3 SINE Alu 19 138 -11 1 1012 189 0 0 0 chr12 56054917 56054938 -65202592 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1012 503 252 18 66 chr12 56054987 56055153 -65202377 + RSINE1 SINE B4 4 161 -4 1 1012 454 232 9 26 chr12 56055184 56055299 -65202231 + L1MC1 LINE L1 5789 5901 -432 1 1012 219 233 32 32 chr12 56055355 56055417 -65202113 + ID4_ SINE ID 21 82 -1 1 1012 560 309 116 76 chr12 56056125 56056548 -65200982 + MLT2B3 LTR ERVL 115 554 0 1 1012 263 330 29 10 chr12 56056600 56056704 -65200826 - PB1D10 SINE Alu -9 108 3 1 1012 216 105 0 0 chr12 56056737 56056749 -65200781 + (A)n Simple_repeat Simple_repeat 1 12 0 1 1012 1261 41 0 0 chr12 56056749 56056896 -65200634 + B1_Mus2 SINE Alu 1 147 0 1 1012 216 105 0 0 chr12 56056896 56056921 -65200609 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1012 678 184 35 14 chr12 56056936 56057079 -65200451 + B1_Mur4 SINE Alu 5 150 0 1 1012 498 33 0 0 chr12 56057765 56057825 -65199705 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1012 307 333 0 0 chr12 56057829 56057934 -65199596 + PB1D10 SINE Alu 5 109 -8 1 1012 647 246 42 108 chr12 56057952 56058312 -65199218 + L1MB8 LINE L1 5841 6176 -2 1 1012 584 170 412 0 chr12 56058323 56058476 -65199054 + B3 SINE B2 1 216 0 1 1012 677 264 20 20 chr12 56059064 56059261 -65198269 + B3A SINE B2 1 197 -1 1 1012 673 211 80 23 chr12 56059300 56059475 -65198055 + B3A SINE B2 2 186 -12 1 1012 292 253 40 0 chr12 56059512 56059587 -65197943 + B3A SINE B2 17 94 -104 1 1012 241 245 0 0 chr12 56059658 56059711 -65197819 + L1MC LINE L1 3593 3645 -2501 1 1012 1769 223 170 16 chr12 56059723 56059972 -65197558 + L1MB4 LINE L1 5265 5558 -622 1 1012 2145 118 11 17 chr12 56059972 56060333 -65197197 + RLTR15 LTR ERVK 1 359 0 1 1012 1769 242 147 21 chr12 56060333 56060865 -65196665 + L1MB4 LINE L1 5559 6150 -30 1 1012 508 244 164 68 chr12 56061890 56062110 -65195420 + L1MD1 LINE L1 6000 6240 -2 1 1012 25 0 0 0 chr12 56062113 56062138 -65195392 + AT_rich Low_complexity Low_complexity 1 25 0 1 1012 424 148 12 47 chr12 56062232 56062317 -65195213 + B1F SINE Alu 68 149 0 1 1012 443 200 12 0 chr12 56062346 56062426 -65195104 + RSINE1 SINE B4 32 112 -53 1 1012 24 0 0 0 chr12 56062493 56062517 -65195013 + AT_rich Low_complexity Low_complexity 1 24 0 1 1012 263 308 88 0 chr12 56062530 56062621 -65194909 + PB1 SINE Alu 19 117 -10 1 1012 621 311 66 42 chr12 56062649 56063002 -65194528 - MTE2a LTR MaLR 0 419 49 1 1012 223 127 0 68 chr12 56063086 56063145 -65194385 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 1012 632 163 16 15 chr12 56063244 56063368 -65194162 + B1_Mur3 SINE Alu 5 118 -2 1 1012 509 179 304 36 chr12 56063454 56063622 -65193908 + B3 SINE B2 1 213 -3 1 1012 252 0 0 0 chr12 56063707 56063735 -65193795 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1012 414 0 0 0 chr12 56063735 56063780 -65193750 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1012 1200 41 0 0 chr12 56064770 56064916 -65192614 + B1_Mus2 SINE Alu 2 147 0 1 1012 195 42 0 0 chr12 56064919 56064943 -65192587 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1012 343 286 39 31 chr12 56065383 56065512 -65192018 + B4 SINE B4 81 210 -82 1 1012 3829 167 135 20 chr12 56065512 56066394 -65191136 - RLTR13C1 LTR ERVK 0 983 1 1 1012 437 296 20 14 chr12 56066632 56066779 -65190751 - B1_Mur1 SINE Alu 0 149 2 1 1012 443 239 228 0 chr12 56066930 56067097 -65190433 + B3 SINE B2 1 205 -11 1 1012 264 155 31 94 chr12 56067597 56067661 -65189869 - PB1D7 SINE Alu -59 61 2 1 1012 258 32 0 0 chr12 56067914 56067945 -65189585 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1012 1018 90 7 7 chr12 56068066 56068201 -65189329 + B1_Mus1 SINE Alu 2 136 -12 1 1012 387 0 0 0 chr12 56068202 56068245 -65189285 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1012 226 262 148 12 chr12 56068396 56068477 -65189053 - Tigger15a DNA TcMar -387 328 237 1 1012 688 175 24 8 chr12 56068738 56068865 -65188665 + B1_Mur1 SINE Alu 1 129 -20 1 1012 258 32 0 0 chr12 56068911 56068942 -65188588 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1012 468 200 10 21 chr12 56069035 56069132 -65188398 + ID_B1 SINE B4 123 218 -6 1 1012 482 318 91 10 chr12 56069135 56069332 -65188198 + B4 SINE B4 4 216 -76 1 1012 3376 36 15 3 chr12 56069717 56070108 -65187422 - MTA_Mm LTR MaLR 0 396 1 1 1012 354 297 11 0 chr12 56070109 56070200 -65187330 - PB1D10 SINE Alu -7 110 19 1 1012 704 236 74 37 chr12 56070615 56070804 -65186726 + B3 SINE B2 2 197 -19 1 1012 1083 78 14 0 chr12 56070950 56071091 -65186439 - B1_Mus1 SINE Alu -5 143 1 1 1012 4571 65 23 23 chr12 56071175 56071260 -65186270 - L1_Mur1 LINE L1 -1281 4605 4532 1 1012 1160 68 7 0 chr12 56071260 56071406 -65186124 - B1_Mus2 SINE Alu 0 147 1 1 1012 4571 65 23 23 chr12 56071406 56071965 -65185565 - L1_Mur1 LINE L1 -1355 4531 3961 1 1012 619 125 80 9 chr12 56071968 56072081 -65185449 + B1_Mur3 SINE Alu 9 129 -20 1 1012 661 179 95 13 chr12 56072098 56072256 -65185274 + B3 SINE B2 46 216 0 1 1012 2066 48 0 0 chr12 56072465 56072715 -65184815 - L1_Mus1 LINE L1 0 6567 6318 1 1012 296 228 331 12 chr12 56072823 56072983 -65184547 - ID_B1 SINE B4 -11 213 3 2 1012 248 312 138 28 chr12 56073622 56073803 -65183727 - L2a LINE L2 -227 3199 2999 2 1012 229 169 50 17 chr12 56074035 56074095 -65183435 - MTEa LTR MaLR 0 379 318 2 1012 795 259 132 22 chr12 56074170 56074442 -65183088 - MTE-int LTR MaLR -602 978 677 2 1012 269 65 0 61 chr12 56074523 56074552 -65182978 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1012 1033 58 43 14 chr12 56074552 56074693 -65182837 + B1_Mus2 SINE Alu 1 145 -2 2 1012 269 65 0 61 chr12 56074693 56074712 -65182818 + (A)n Simple_repeat Simple_repeat 1 17 0 2 1012 232 306 11 23 chr12 56074734 56074821 -65182709 - ID_B1 SINE B4 -70 154 69 2 1012 601 246 138 128 chr12 56074971 56075167 -65182363 + B3 SINE B2 1 209 -7 2 1012 406 210 0 12 chr12 56075204 56075286 -65182244 + RSINE1 SINE B4 14 94 -71 2 1012 285 208 156 0 chr12 56075316 56075393 -65182137 - ID_B1 SINE B4 -12 212 124 2 1012 489 211 28 19 chr12 56075926 56076032 -65181498 - PB1D10 SINE Alu -10 107 1 2 1012 2880 90 218 50 chr12 56076893 56077408 -65180122 + MT2B LTR ERVL 1 601 0 2 1012 227 260 153 20 chr12 56077510 56077608 -65179922 + B1F1 SINE Alu 31 141 -8 2 1012 207 190 0 0 chr12 56078509 56078567 -65178963 + (ATG)n Simple_repeat Simple_repeat 2 59 0 2 1012 690 216 71 6 chr12 56078573 56078741 -65178789 + B3A SINE B2 3 181 -17 2 1012 653 148 69 69 chr12 56078979 56079124 -65178406 + B1_Mur4 SINE Alu 6 150 0 2 1012 206 121 0 0 chr12 56079125 56079158 -65178372 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1012 350 306 8 76 chr12 56079649 56079780 -65177750 + RSINE1 SINE B4 38 159 -6 2 1012 236 297 127 13 chr12 56080369 56080519 -65177011 + MER58A DNA MER1_type 45 211 -13 2 1012 1674 36 0 0 chr12 56080708 56080901 -65176629 + B2_Mm1a SINE B2 1 193 0 2 1012 530 207 35 69 chr12 56081922 56082067 -65175463 - B1_Mus2 SINE Alu -7 140 1 2 1012 282 260 156 39 chr12 56082123 56082251 -65175279 + MIRb SINE MIR 59 201 -67 2 1012 1269 184 9 0 chr12 56082332 56082555 -65174975 - URR1B DNA MER1_type 0 225 1 2 1012 1122 188 10 5 chr12 56083071 56083269 -65174261 - B3 SINE B2 -13 203 5 2 1012 221 245 0 19 chr12 56083756 56083810 -65173720 + GA-rich Low_complexity Low_complexity 1 53 0 2 1012 378 202 93 28 chr12 56084083 56084190 -65173340 + PB1D10 SINE Alu 3 116 -1 2 1012 22 70 0 0 chr12 56084758 56084801 -65172729 + AT_rich Low_complexity Low_complexity 1 43 0 2 1012 39 0 0 0 chr12 56084850 56084889 -65172641 + AT_rich Low_complexity Low_complexity 1 39 0 2 1012 213 243 132 26 chr12 56084947 56085023 -65172507 - B1F SINE Alu -37 112 29 2 1012 258 32 0 0 chr12 56085583 56085614 -65171916 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1012 31 102 0 0 chr12 56086457 56086565 -65170965 + GC_rich Low_complexity Low_complexity 1 108 0 2 1012 40 72 0 26 chr12 56086912 56087027 -65170503 + GC_rich Low_complexity Low_complexity 1 112 0 2 1012 672 44 11 0 chr12 56088541 56088631 -65168899 + B1_Mus2 SINE Alu 56 146 -1 2 1012 243 79 0 0 chr12 56088789 56088827 -65168703 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1012 606 238 8 0 chr12 56089015 56089137 -65168393 + RSINE1 SINE B4 4 126 -39 2 1012 23 54 0 0 chr12 56089166 56089203 -65168327 + AT_rich Low_complexity Low_complexity 1 37 0 2 1012 1145 166 14 5 chr12 56089455 56089673 -65167857 + ORR1C2 LTR MaLR 1 220 -164 2 1012 238 241 0 0 chr12 56089758 56089816 -65167714 - MER5B DNA MER1_type -5 173 116 2 1012 210 71 0 0 chr12 56089826 56089854 -65167676 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 2 1012 207 0 0 0 chr12 56089858 56089881 -65167649 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1012 783 176 0 33 chr12 56089884 56090037 -65167493 - B1_Mur3 SINE Alu -1 148 1 2 1012 556 164 189 0 chr12 56090380 56090502 -65167028 + B1_Mur4 SINE Alu 6 150 0 2 1012 1054 109 0 20 chr12 56090839 56090989 -65166541 + B1_Mus2 SINE Alu 1 147 0 2 1012 324 277 188 7 chr12 56091230 56091379 -65166151 + L1MC LINE L1 5342 5517 -2365 2 1012 535 270 80 0 chr12 56091708 56091845 -65165685 + B3 SINE B2 58 205 -11 2 1012 33 80 0 0 chr12 56092048 56092123 -65165407 + AT_rich Low_complexity Low_complexity 1 75 0 2 1012 23 0 0 0 chr12 56092666 56092689 -65164841 + AT_rich Low_complexity Low_complexity 1 23 0 2 1012 23 33 0 0 chr12 56093334 56093364 -65164166 + AT_rich Low_complexity Low_complexity 1 30 0 2 1012 841 217 61 0 chr12 56093379 56093577 -65163953 - B3 SINE B2 -6 210 1 2 1012 377 308 156 6 chr12 56093644 56093804 -65163726 + MLT1E2 LTR MaLR 1 184 -443 2 1012 246 128 0 0 chr12 56093820 56093859 -65163671 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 1012 249 242 61 0 chr12 56093868 56093934 -65163596 - ID4_ SINE ID -13 70 1 2 1012 231 253 51 51 chr12 56093952 56094031 -65163499 + MLT1E2 LTR MaLR 231 309 -196 2 1012 337 274 78 17 chr12 56094071 56094186 -65163344 + MLT1E2 LTR MaLR 298 419 -86 2 1012 376 170 82 31 chr12 56095645 56095742 -65161788 + PB1D10 SINE Alu 9 110 -7 2 1012 23 0 0 0 chr12 56095758 56095781 -65161749 + AT_rich Low_complexity Low_complexity 1 23 0 2 1012 626 279 16 43 chr12 56096282 56096469 -65161061 + MTD LTR MaLR 45 226 -193 2 1012 256 189 18 36 chr12 56096708 56096763 -65160767 - B1_Mm SINE Alu -54 93 40 2 1012 214 294 0 0 chr12 56096763 56096831 -65160699 + (CCTG)n Simple_repeat Simple_repeat 3 70 0 2 1012 240 207 32 65 chr12 56096833 56096895 -65160635 - B1_Mur4 SINE Alu -90 60 1 2 1012 22 0 0 0 chr12 56097018 56097040 -65160490 + AT_rich Low_complexity Low_complexity 1 22 0 2 1012 242 253 13 51 chr12 56097153 56097232 -65160298 + ID4_ SINE ID 2 77 -6 2 1012 664 182 45 0 chr12 56097243 56097375 -65160155 + B1_Mur4 SINE Alu 11 148 -2 2 1012 210 143 0 0 chr12 56097381 56097416 -65160114 + (GGA)n Simple_repeat Simple_repeat 3 37 0 2 1012 555 16 0 0 chr12 56097428 56097492 -65160038 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 2 1012 212 244 0 0 chr12 56097494 56097535 -65159995 + polypurine Low_complexity Low_complexity 2 42 0 2 1012 269 272 12 47 chr12 56097956 56098041 -65159489 + ID4_ SINE ID 2 83 0 2 1012 528 208 9 0 chr12 56098058 56098164 -65159366 + U6 snRNA snRNA 1 107 0 2 1012 297 277 9 114 chr12 56098491 56098605 -65158925 - B1F2 SINE Alu 0 120 19 2 1013 769 140 49 42 chr12 56098951 56099093 -65158437 + B1_Mus1 SINE Alu 1 143 -5 2 1013 229 269 0 0 chr12 56099137 56099189 -65158341 + PB1D10 SINE Alu 41 92 -25 2 1013 282 267 38 38 chr12 56099403 56099508 -65158022 + PB1D10 SINE Alu 1 105 -12 2 1013 558 285 84 74 chr12 56099561 56099845 -65157685 - B4A SINE B4 -2 290 4 2 1013 244 349 177 51 chr12 56100213 56100524 -65157006 + MLT1J2 LTR MaLR 33 382 -66 2 1013 465 93 0 39 chr12 56100566 56100644 -65156886 - PB1D9 SINE Alu -1 119 45 2 1013 339 300 45 0 chr12 56100895 56101005 -65156525 + ID_B1 SINE B4 105 219 -5 2 1013 235 300 37 12 chr12 56101004 56101085 -65156445 + B4A SINE B4 74 156 -136 2 1013 360 265 40 10 chr12 56101022 56101121 -65156409 + PB1D7 SINE Alu 10 111 -9 2 1013 420 233 99 41 chr12 56101273 56101394 -65156136 + B1F SINE Alu 22 149 0 2 1013 445 231 83 9 chr12 56101438 56101547 -65155983 + B1F2 SINE Alu 2 118 -31 2 1013 306 257 74 66 chr12 56101439 56101560 -65155970 + ID_B1 SINE B4 84 205 -19 2 1013 520 259 114 6 chr12 56101748 56101915 -65155615 - ID_B1 SINE B4 -38 186 2 2 1013 213 65 0 0 chr12 56101927 56101958 -65155572 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1013 583 270 22 25 chr12 56102097 56102286 -65155244 + MTD LTR MaLR 56 232 -175 2 1013 37 0 0 0 chr12 56102326 56102363 -65155167 + AT_rich Low_complexity Low_complexity 1 37 0 2 1013 354 227 87 43 chr12 56102462 56102600 -65154930 + L1MD2 LINE L1 5798 5941 -418 2 1013 236 243 122 0 chr12 56102734 56102808 -65154722 + PB1D7 SINE Alu 9 91 -29 2 1013 512 193 101 0 chr12 56102742 56102851 -65154679 + ID_B1 SINE B4 99 218 -6 2 1013 499 260 0 44 chr12 56103036 56103173 -65154357 - RSINE1 SINE B4 -4 161 31 2 1013 314 292 98 24 chr12 56103206 56103329 -65154201 - B1F SINE Alu -17 132 1 2 1013 1168 68 0 7 chr12 56103497 56103645 -65153885 + B1_Mus2 SINE Alu 1 147 0 2 1013 261 267 107 0 chr12 56103869 56103944 -65153586 + PB1D10 SINE Alu 2 84 -33 2 1013 1166 163 27 44 chr12 56104021 56104246 -65153284 + URR1B DNA MER1_type 1 221 -4 2 1013 534 123 0 0 chr12 56104406 56104487 -65153043 + B3 SINE B2 1 81 -135 2 1013 24 32 0 0 chr12 56104556 56104587 -65152943 + AT_rich Low_complexity Low_complexity 1 31 0 2 1013 747 214 86 6 chr12 56104598 56104772 -65152758 + B3 SINE B2 29 216 0 2 1013 496 265 144 46 chr12 56104804 56104978 -65152552 + B3A SINE B2 7 197 -1 2 1013 898 173 7 0 chr12 56105000 56105139 -65152391 + B1_Mur4 SINE Alu 2 141 -9 2 1013 286 333 71 9 chr12 56105167 56105279 -65152251 + B4A SINE B4 78 196 -96 2 1013 679 169 16 25 chr12 56105190 56105311 -65152219 + B1_Mur1 SINE Alu 18 137 -12 2 1013 683 224 168 11 chr12 56105326 56105511 -65152019 - B3 SINE B2 -1 215 2 2 1013 849 283 12 32 chr12 56105597 56105845 -65151685 - B4 SINE B4 0 292 50 3 1013 224 30 0 29 chr12 56106027 56106061 -65151469 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1013 1142 59 0 0 chr12 56106061 56106197 -65151333 - B1_Mus1 SINE Alu -10 138 3 3 1013 480 178 112 0 chr12 56106283 56106390 -65151140 + PB1D9 SINE Alu 2 120 0 3 1013 28 0 0 0 chr12 56106629 56106657 -65150873 + AT_rich Low_complexity Low_complexity 1 28 0 3 1013 517 298 0 0 chr12 56106696 56106820 -65150710 - B3 SINE B2 -28 188 65 3 1013 1634 161 19 10 chr12 56106983 56107291 -65150239 - ORR1D1 LTR MaLR 0 374 64 3 1013 350 157 0 91 chr12 56107488 56107565 -65149965 + B1_Mus2 SINE Alu 35 104 -43 3 1013 626 150 8 0 chr12 56107574 56107694 -65149836 + GA-rich Low_complexity Low_complexity 3 123 0 3 1013 225 0 0 0 chr12 56108083 56108108 -65149422 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 3 1013 641 212 51 0 chr12 56108266 56108403 -65149127 - RSINE1 SINE B4 -17 148 5 3 1013 562 277 42 6 chr12 56108491 56108658 -65148872 - B3A SINE B2 -25 173 1 3 1013 975 160 50 55 chr12 56109052 56109251 -65148279 - B3 SINE B2 -18 198 1 3 1013 562 120 40 0 chr12 56109681 56109806 -65147724 + GA-rich Low_complexity Low_complexity 1 130 0 3 1013 611 192 136 26 chr12 56109813 56109968 -65147562 + ID_B1 SINE B4 9 180 -44 3 1013 688 90 18 18 chr12 56109969 56110082 -65147448 - BC1_Mm scRNA scRNA -39 113 1 3 1013 420 20 0 0 chr12 56110353 56110402 -65147128 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1013 581 177 24 0 chr12 56110610 56110734 -65146796 + ORR1D1 LTR MaLR 1 127 -247 3 1013 200 200 236 0 chr12 56110749 56110804 -65146726 - MIRb SINE MIR -159 109 42 3 1013 818 229 25 5 chr12 56110893 56111091 -65146439 - B4A SINE B4 -20 272 71 3 1013 497 198 120 32 chr12 56111150 56111275 -65146255 - B3 SINE B2 0 216 81 3 1013 522 186 53 0 chr12 56111739 56111852 -65145678 + PB1D9 SINE Alu 2 120 0 3 1013 685 194 170 10 chr12 56112152 56112342 -65145188 - B3 SINE B2 -6 210 12 3 1013 332 250 0 0 chr12 56112390 56112470 -65145060 - PB1D10 SINE Alu -37 80 1 3 1013 313 206 16 0 chr12 56112517 56112580 -65144950 - ID4 SINE ID -18 65 2 3 1013 277 271 35 53 chr12 56112583 56112696 -65144834 - PB1 SINE Alu -2 125 15 3 1013 566 274 162 0 chr12 56112771 56112975 -65144555 + B4A SINE B4 2 238 -54 3 1013 207 176 0 0 chr12 56113017 56113051 -65144479 + (CATG)n Simple_repeat Simple_repeat 3 36 0 3 1013 432 248 143 0 chr12 56113277 56113382 -65144148 + RSINE1 SINE B4 3 122 -43 3 1013 365 310 161 17 chr12 56114265 56114439 -65143091 + ID_B1 SINE B4 3 201 -23 3 1013 2454 143 55 12 chr12 56114445 56114849 -65142681 + MTC LTR MaLR 1 421 0 3 1013 817 185 7 0 chr12 56115897 56116043 -65141487 - B1_Mur2 SINE Alu 0 149 3 3 1013 292 202 9 146 chr12 56116049 56116159 -65141371 - B1F SINE Alu 0 149 55 3 1013 1376 75 21 0 chr12 56116231 56116419 -65141111 - B2_Mm1a SINE B2 -1 192 1 3 1013 896 112 7 47 chr12 56116463 56116613 -65140917 - B1_Mur4 SINE Alu -1 149 6 3 1013 401 258 32 142 chr12 56116464 56116654 -65140876 - B4 SINE B4 -69 223 55 3 1013 298 253 89 131 chr12 56116510 56116678 -65140852 - MT2B LTR ERVL -345 256 96 3 1013 192 77 0 0 chr12 56116678 56116704 -65140826 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1013 752 239 0 0 chr12 56116962 56117104 -65140426 - B1F2 SINE Alu -5 144 3 3 1013 232 267 50 0 chr12 56117397 56117457 -65140073 - ID SINE ID -154 70 8 3 1013 707 211 127 21 chr12 56117677 56117866 -65139664 - B3 SINE B2 -7 209 1 3 1013 445 262 20 34 chr12 56118216 56118362 -65139168 + MER5B DNA MER1_type 34 177 -1 3 1013 421 268 18 67 chr12 56118390 56118554 -65138976 - MER5A1 DNA MER1_type -3 163 8 3 1013 755 235 5 114 chr12 56118617 56118819 -65138711 + B3 SINE B2 1 180 -36 3 1013 737 202 208 0 chr12 56118944 56119117 -65138413 + B3 SINE B2 1 209 -7 3 1013 654 214 15 0 chr12 56119160 56119291 -65138239 + B1_Mur1 SINE Alu 4 136 -13 3 1013 471 232 160 67 chr12 56119319 56119362 -65138168 + B3 SINE B2 5 44 -172 3 1013 851 162 195 0 chr12 56119362 56119547 -65137983 - URR1B DNA MER1_type 0 225 5 3 1013 471 232 160 67 chr12 56119547 56119697 -65137833 + B3 SINE B2 45 216 0 3 1013 598 203 17 8 chr12 56119788 56119907 -65137623 + PB1D9 SINE Alu 1 120 0 3 1013 789 249 31 13 chr12 56120002 56120226 -65137304 - Tigger5 DNA MER2_type 0 2406 2179 3 1013 436 317 77 7 chr12 56120292 56120435 -65137095 - Tigger5 DNA MER2_type -2200 206 54 3 1013 559 267 124 10 chr12 56120790 56120983 -65136547 + B3 SINE B2 2 216 0 3 1013 599 171 0 4 chr12 56121052 56121168 -65136362 + B1_Mur2 SINE Alu 36 148 0 3 1013 212 122 41 0 chr12 56121168 56121217 -65136313 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 3 1013 3349 50 0 0 chr12 56121255 56121651 -65135879 + MTA_Mm LTR MaLR 1 396 0 3 1013 9336 35 5 1 chr12 56121651 56122744 -65134786 + MTA_Mm-int LTR MaLR 1 1097 -1 3 1013 3331 36 5 2 chr12 56122747 56123140 -65134390 + MTA_Mm LTR MaLR 3 396 0 3 1013 535 252 99 33 chr12 56123869 56123903 -65133627 + RSINE1 SINE B4 2 35 -130 3 1013 3192 91 172 10 chr12 56123903 56124391 -65133139 + RMER2 LTR ERV1 1 567 0 3 1013 535 252 99 33 chr12 56124391 56124508 -65133022 + RSINE1 SINE B4 36 163 -2 3 1013 214 297 9 38 chr12 56124723 56124828 -65132702 - MIRb SINE MIR -68 200 99 3 1013 610 189 32 83 chr12 56124902 56125058 -65132472 - B1_Mur2 SINE Alu 0 149 2 3 1013 1684 230 61 53 chr12 56125177 56125705 -65131825 - RMER15 LTR ERVL 0 575 44 3 1013 415 115 0 0 chr12 56125971 56126032 -65131498 + MTC LTR MaLR 1 61 -360 3 1013 733 129 48 8 chr12 56126031 56126156 -65131374 + MTC LTR MaLR 292 421 0 3 1013 465 301 21 14 chr12 56126320 56126465 -65131065 - RSINE1 SINE B4 -15 150 5 3 1013 482 309 22 0 chr12 56126503 56126642 -65130888 + B1F1 SINE Alu 3 144 -5 3 1013 611 175 0 0 chr12 56126699 56126802 -65130728 + B1_Mus2 SINE Alu 39 141 -6 3 1013 378 0 0 0 chr12 56126802 56126844 -65130686 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 3 1013 433 314 25 25 chr12 56126854 56127014 -65130516 + RSINE1 SINE B4 6 165 0 3 1013 483 283 20 20 chr12 56127355 56127503 -65130027 + B1F SINE Alu 2 149 0 3 1013 354 205 0 0 chr12 56127505 56127588 -65129942 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1013 209 108 27 0 chr12 56127624 56127661 -65129869 + (GGGAGA)n Simple_repeat Simple_repeat 6 43 0 3 1013 213 39 0 0 chr12 56127802 56127828 -65129702 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1013 362 263 52 10 chr12 56127829 56127925 -65129605 - B1_Mur2 SINE Alu -49 100 1 3 1013 254 262 0 0 chr12 56127949 56128010 -65129520 - AluF_3 SINE Alu -114 197 137 3 1013 919 159 0 0 chr12 56128374 56128519 -65129011 + B1_Mur4 SINE Alu 5 149 -1 3 1013 1664 26 5 0 chr12 56128824 56129015 -65128515 + B2_Mm1t SINE B2 2 193 0 3 1013 374 298 19 0 chr12 56129787 56129891 -65127639 + PB1D10 SINE Alu 1 106 -11 3 1013 274 236 100 0 chr12 56129893 56130003 -65127527 - ORR1E LTR MaLR -9 370 250 3 1013 302 352 0 9 chr12 56130056 56130165 -65127365 - ORR1E LTR MaLR -210 149 42 3 1013 934 173 122 30 chr12 56130218 56130415 -65127115 - B3 SINE B2 -1 215 1 3 1013 27 29 0 0 chr12 56130415 56130449 -65127081 + AT_rich Low_complexity Low_complexity 1 34 0 3 1013 290 286 133 0 chr12 56130479 56130577 -65126953 + MLT1I LTR MaLR 245 355 -56 3 1013 198 0 0 0 chr12 56130578 56130600 -65126930 + (CAGA)n Simple_repeat Simple_repeat 4 25 0 3 1013 207 0 0 0 chr12 56130809 56130832 -65126698 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 3 1013 666 256 0 0 chr12 56130832 56130969 -65126561 - B1_Mur1 SINE Alu -12 137 1 3 1013 246 208 0 0 chr12 56131121 56131174 -65126356 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1013 189 74 0 0 chr12 56131481 56131508 -65126022 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1013 4213 89 59 22 chr12 56132422 56133088 -65124442 - Lx4A LINE L1 -724 6334 5645 3 1013 4990 114 40 6 chr12 56133088 56133812 -65123718 + Lx4A LINE L1 6310 7058 0 3 1013 765 210 14 0 chr12 56134317 56134460 -65123070 - B1F SINE Alu -4 145 1 3 1013 351 240 150 0 chr12 56134524 56134624 -65122906 + ID_B1 SINE B4 84 198 -26 3 1013 456 19 0 0 chr12 56134658 56134711 -65122819 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1013 27 0 0 0 chr12 56134779 56134806 -65122724 + AT_rich Low_complexity Low_complexity 1 27 0 3 1013 555 201 0 0 chr12 56134825 56135004 -65122526 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 1013 508 241 62 34 chr12 56135012 56135188 -65122342 - B3A SINE B2 -16 182 2 3 1013 611 234 122 25 chr12 56135217 56135414 -65122116 - B3 SINE B2 0 216 1 3 1013 235 203 284 0 chr12 56135509 56135583 -65121947 - MIR3 SINE MIR -44 164 70 3 1013 581 119 0 0 chr12 56136630 56136714 -65120816 - B1_Mur4 SINE Alu -44 106 23 3 1013 441 197 16 79 chr12 56136723 56136850 -65120680 + RMER1C Other Other 1224 1342 0 3 1013 249 57 0 0 chr12 56136859 56136894 -65120636 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 1013 219 157 0 0 chr12 56136954 56137005 -65120525 + T-rich Low_complexity Low_complexity 5 55 0 3 1013 198 0 0 0 chr12 56137014 56137036 -65120494 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1013 212 122 0 24 chr12 56137042 56137084 -65120446 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 3 1013 427 280 19 83 chr12 56137833 56137989 -65119541 + B4A SINE B4 147 292 0 3 1013 213 65 0 0 chr12 56138426 56138457 -65119073 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1013 221 171 342 38 chr12 56138500 56138579 -65118951 + B1_Mus1 SINE Alu 25 127 -21 4 1013 653 188 8 15 chr12 56138606 56138736 -65118794 - B3 SINE B2 -2 214 86 4 1013 417 276 13 65 chr12 56138753 56138908 -65118622 - RSINE1 SINE B4 -6 159 13 4 1013 541 237 169 6 chr12 56139095 56139273 -65118257 + B3 SINE B2 4 210 -6 4 1013 423 211 98 142 chr12 56139377 56139581 -65117949 - B3A SINE B2 -3 195 1 4 1013 602 240 31 0 chr12 56139668 56139797 -65117733 - B1F SINE Alu 0 149 17 4 1013 35 24 0 0 chr12 56139797 56139839 -65117691 + AT_rich Low_complexity Low_complexity 1 42 0 4 1013 846 59 151 0 chr12 56139870 56139989 -65117541 + B1_Mus1 SINE Alu 2 138 -10 4 1013 266 0 0 29 chr12 56139989 56140024 -65117506 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1013 593 168 8 0 chr12 56140655 56140786 -65116744 + (TG)n Simple_repeat Simple_repeat 1 132 0 4 1013 332 233 72 121 chr12 56140786 56140807 -65116723 - RSINE1 SINE B4 0 165 145 4 1013 411 21 0 0 chr12 56140807 56140855 -65116675 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1013 332 233 72 121 chr12 56140855 56140999 -65116531 - RSINE1 SINE B4 -21 144 8 4 1013 492 258 25 38 chr12 56141005 56141162 -65116368 - ID_B1 SINE B4 -1 223 69 4 1013 563 265 59 27 chr12 56141203 56141389 -65116141 + B3A SINE B2 1 192 -6 4 1013 472 243 9 37 chr12 56141649 56141756 -65115774 - ID_B1 SINE B4 -17 207 104 4 1013 411 252 33 16 chr12 56141655 56141776 -65115754 - B1F SINE Alu -26 123 1 4 1013 248 344 141 11 chr12 56141850 56142035 -65115495 - MLT1F2 LTR MaLR -345 215 7 4 1013 252 224 0 0 chr12 56142345 56142394 -65115136 + B4A SINE B4 87 135 -157 4 1013 913 237 4 61 chr12 56142613 56142801 -65114729 - B3 SINE B2 0 216 41 4 1013 1682 26 5 0 chr12 56142801 56142993 -65114537 - B2_Mm1t SINE B2 0 193 1 4 1013 913 237 4 61 chr12 56142993 56143033 -65114497 - B3 SINE B2 -176 40 1 4 1013 225 96 70 88 chr12 56143204 56143261 -65114269 - L2c LINE L2 -1 3386 3331 4 1013 645 225 29 7 chr12 56143287 56143426 -65114104 - B1_Mur1 SINE Alu 0 149 8 4 1013 294 295 72 86 chr12 56143295 56143447 -65114083 - B4 SINE B4 -74 218 69 4 1013 486 0 0 0 chr12 56143452 56143506 -65114024 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 4 1013 22 56 0 0 chr12 56143511 56143547 -65113983 + AT_rich Low_complexity Low_complexity 1 36 0 4 1013 1115 111 32 43 chr12 56143558 56143746 -65113784 + B2_Mm2 SINE B2 1 186 -9 4 1013 343 317 24 55 chr12 56144000 56144127 -65113403 - RSINE1 SINE B4 0 165 43 4 1013 418 194 0 0 chr12 56144168 56144240 -65113290 - B1_Mur4 SINE Alu -77 73 2 4 1013 232 128 0 0 chr12 56144258 56144297 -65113233 - PB1D9 SINE Alu 0 120 82 4 1013 279 0 0 0 chr12 56144842 56144873 -65112657 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1013 264 242 118 0 chr12 56145438 56145531 -65111999 - B1F1 SINE Alu -6 114 12 4 1013 500 200 189 16 chr12 56146181 56146303 -65111227 + B1_Mm SINE Alu 1 143 -4 4 1013 26 0 0 0 chr12 56146443 56146469 -65111061 + AT_rich Low_complexity Low_complexity 1 26 0 4 1013 732 235 133 5 chr12 56147021 56147209 -65110321 - B3 SINE B2 -4 212 1 4 1013 1056 169 44 15 chr12 56147341 56147545 -65109985 - B3 SINE B2 -6 210 1 4 1013 354 206 21 52 chr12 56148156 56148253 -65109277 - PB1D10 SINE Alu -5 112 19 4 1013 949 216 29 0 chr12 56148304 56148508 -65109022 + B3 SINE B2 1 210 -6 4 1013 189 0 0 0 chr12 56148628 56148649 -65108881 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 4 1013 698 197 15 8 chr12 56148649 56148782 -65108748 - B1_Mus2 SINE Alu -12 135 2 4 1013 224 261 14 14 chr12 56148925 56148995 -65108535 + B3A SINE B2 2 71 -127 4 1013 351 221 84 0 chr12 56149218 56149313 -65108217 - PB1 SINE Alu -7 120 18 4 1013 641 230 0 0 chr12 56149626 56149752 -65107778 - B1_Mus2 SINE Alu -21 126 1 4 1013 534 70 0 0 chr12 56149780 56149851 -65107679 + (CCAA)n Simple_repeat Simple_repeat 2 72 0 4 1013 477 286 0 20 chr12 56150130 56150280 -65107250 + B1F SINE Alu 1 147 -2 4 1013 1535 269 127 11 chr12 56150312 56150739 -65106791 + L1MC1 LINE L1 5611 6094 -239 4 1013 354 45 0 0 chr12 56150739 56150783 -65106747 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1013 1535 269 127 11 chr12 56150783 56150987 -65106543 + L1MC1 LINE L1 6095 6315 -18 4 1013 543 159 26 34 chr12 56152562 56152679 -65104851 - PB1D9 SINE Alu 0 120 5 4 1013 328 259 61 26 chr12 56152872 56152987 -65104543 + B1F2 SINE Alu 1 119 -30 4 1013 283 192 0 0 chr12 56153058 56153110 -65104420 + ID4 SINE ID 7 58 -25 4 1013 321 272 19 10 chr12 56153208 56153312 -65104218 + MTE2a LTR MaLR 1 105 -274 4 1013 366 169 60 0 chr12 56153390 56153473 -65104057 + MTE2a LTR MaLR 292 379 0 4 1013 300 247 66 22 chr12 56153591 56153682 -65103848 + RSINE1 SINE B4 1 95 -70 4 1013 1241 34 7 0 chr12 56153690 56153836 -65103694 - B1_Mus2 SINE Alu 0 147 1 4 1013 24 0 0 0 chr12 56154004 56154028 -65103502 + AT_rich Low_complexity Low_complexity 1 24 0 4 1013 636 130 65 0 chr12 56154035 56154143 -65103387 + B1_Mus2 SINE Alu 33 147 0 4 1013 198 282 114 13 chr12 56154655 56154734 -65102796 + MIRb SINE MIR 35 121 -147 4 1013 1089 167 0 15 chr12 56154776 56154982 -65102548 + B3 SINE B2 13 215 -1 4 1013 1090 175 43 5 chr12 56155144 56155351 -65102179 + B3 SINE B2 2 216 0 4 1013 311 44 22 0 chr12 56156244 56156289 -65101241 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1013 243 0 0 0 chr12 56156299 56156326 -65101204 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1013 25 83 0 0 chr12 56156603 56156663 -65100867 + AT_rich Low_complexity Low_complexity 1 60 0 4 1013 652 154 49 0 chr12 56156748 56156871 -65100659 - B1_Mur3 SINE Alu 0 149 21 4 1013 441 238 99 0 chr12 56156854 56156955 -65100575 - B3 SINE B2 -105 111 1 4 1013 276 176 4 8 chr12 56157034 56157099 -65100431 + B1_Mur1 SINE Alu 66 129 -18 4 1013 1164 68 14 0 chr12 56157250 56157396 -65100134 - B1_Mus1 SINE Alu 0 148 1 4 1013 482 284 22 43 chr12 56157518 56157702 -65099828 - B3A SINE B2 -18 180 1 4 1013 347 299 51 0 chr12 56159968 56160085 -65097445 + ID_B1 SINE B4 81 203 -21 4 1013 593 188 26 0 chr12 56160632 56160749 -65096781 - PB1D9 SINE Alu 0 120 1 4 1013 422 264 120 40 chr12 56161720 56161870 -65095660 - RSINE1 SINE B4 -1 164 3 4 1013 180 0 0 0 chr12 56162317 56162337 -65095193 + (CTG)n Simple_repeat Simple_repeat 3 22 0 4 1013 475 246 99 8 chr12 56162548 56162679 -65094851 + B1F SINE Alu 7 149 0 4 1013 658 173 110 0 chr12 56162682 56162809 -65094721 + B1_Mur1 SINE Alu 2 142 -7 4 1013 635 196 65 0 chr12 56162815 56162953 -65094577 + B1_Mus1 SINE Alu 1 147 -1 4 1013 22 94 0 0 chr12 56162973 56163037 -65094493 + AT_rich Low_complexity Low_complexity 1 64 0 4 1013 811 177 0 104 chr12 56163305 56163469 -65094061 - B1_Mus1 SINE Alu -1 147 1 4 1013 34 0 0 0 chr12 56164140 56164174 -65093356 + AT_rich Low_complexity Low_complexity 1 34 0 4 1013 545 215 22 112 chr12 56164300 56164478 -65093052 + RSINE1 SINE B4 4 165 0 4 1013 31 44 0 0 chr12 56164485 56164530 -65093000 + AT_rich Low_complexity Low_complexity 1 45 0 4 1013 404 320 94 10 chr12 56164809 56165011 -65092519 + ID_B1 SINE B4 4 222 -2 4 1013 421 291 8 17 chr12 56165110 56165229 -65092301 - PB1D7 SINE Alu -2 118 1 4 1013 526 217 106 21 chr12 56165271 56165412 -65092118 - B3 SINE B2 -6 210 58 4 1013 1070 64 121 60 chr12 56165437 56165619 -65091911 - B2_Mm2 SINE B2 -1 194 2 4 1013 1430 60 5 42 chr12 56165651 56165843 -65091687 + B2_Mm1t SINE B2 3 187 -6 4 1013 1297 120 16 0 chr12 56165852 56166043 -65091487 + B2_Mm2 SINE B2 1 194 -1 4 1013 349 260 31 10 chr12 56166372 56166469 -65091061 + PB1D7 SINE Alu 22 120 0 4 1013 278 132 19 0 chr12 56166469 56166522 -65091008 + A-rich Low_complexity Low_complexity 2 55 0 4 1013 1019 232 42 19 chr12 56166760 56167024 -65090506 - B4A SINE B4 -19 273 4 4 1013 275 261 82 13 chr12 56167053 56167212 -65090318 - L1MA6 LINE L1 -8 6292 6123 4 1013 527 245 0 7 chr12 56168022 56168170 -65089360 + CT-rich Low_complexity Low_complexity 1 147 0 4 1013 536 201 24 0 chr12 56168170 56168278 -65089252 - B1_Mus2 SINE Alu -6 114 3 4 1013 699 46 0 0 chr12 56168278 56168365 -65089165 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 4 1013 334 324 10 0 chr12 56168365 56168467 -65089063 - PB1D10 SINE Alu -12 108 1 4 1013 266 317 40 0 chr12 56169327 56169428 -65088102 - RSINE1 SINE B4 -33 132 28 4 1013 484 229 98 8 chr12 56169449 56169581 -65087949 - B1_Mur1 SINE Alu -5 144 1 4 1013 1035 109 0 7 chr12 56169615 56169762 -65087768 - B1_Mur4 SINE Alu 0 150 5 4 1013 489 291 144 6 chr12 56171077 56171257 -65086273 + MIR SINE MIR 20 224 -38 4 1013 361 309 206 0 chr12 56171260 56171396 -65086134 + RSINE1 SINE B4 2 165 0 4 1013 25 0 0 0 chr12 56171396 56171421 -65086109 + AT_rich Low_complexity Low_complexity 1 25 0 4 1013 236 53 0 26 chr12 56171501 56171540 -65085990 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 4 1013 1221 55 0 0 chr12 56171540 56171686 -65085844 - B1_Mus2 SINE Alu 0 147 2 4 1013 372 285 226 0 chr12 56171729 56171866 -65085664 + B3A SINE B2 1 168 -30 4 1013 933 78 160 19 chr12 56171937 56172093 -65085437 + B2_Mm1t SINE B2 2 179 -14 5 1013 324 98 425 55 chr12 56172159 56172265 -65085265 + B2_Mm2 SINE B2 47 191 -4 5 1013 425 246 68 55 chr12 56172603 56172749 -65084781 - RSINE1 SINE B4 -14 151 4 5 1013 330 284 135 10 chr12 56172802 56172898 -65084632 + PB1 SINE Alu 1 108 -19 5 1013 637 277 0 7 chr12 56172951 56173089 -65084441 - B1_Mur1 SINE Alu -8 141 5 5 1013 270 295 0 0 chr12 56173380 56173458 -65084072 + PB1D10 SINE Alu 40 117 0 5 1013 288 188 0 0 chr12 56173515 56173584 -65083946 - L1M5 LINE L1 -689 5435 5364 5 1013 29 60 0 0 chr12 56174300 56174350 -65083180 + AT_rich Low_complexity Low_complexity 1 50 0 5 1013 786 156 44 7 chr12 56174410 56174546 -65082984 + B1_Mur4 SINE Alu 2 142 -8 5 1013 303 375 23 6 chr12 56174690 56174867 -65082663 + ORR1E LTR MaLR 39 218 -141 5 1013 457 241 0 0 chr12 56174924 56175032 -65082498 - L1MA8 LINE L1 -370 5921 5814 5 1013 1649 5 16 5 chr12 56175040 56175230 -65082300 - B2_Mm1a SINE B2 0 193 2 5 1013 233 242 48 0 chr12 56175249 56175311 -65082219 + ID4_ SINE ID 3 67 -16 5 1013 436 274 151 67 chr12 56175359 56175731 -65081799 - L1MA8 LINE L1 -479 5812 5410 5 1013 319 282 123 6 chr12 56175892 56176063 -65081467 + L1MDb LINE L1 1 191 -6218 5 1013 945 118 6 32 chr12 56176187 56176319 -65081211 + B2_Mm1t SINE B2 28 160 -33 5 1013 306 0 0 0 chr12 56176319 56176353 -65081177 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 5 1013 945 118 6 32 chr12 56176353 56176377 -65081153 + B2_Mm1t SINE B2 161 180 -13 5 1013 791 201 78 34 chr12 56176410 56176616 -65080914 + B3 SINE B2 2 216 0 5 1013 965 171 126 6 chr12 56176633 56176815 -65080715 + B3 SINE B2 3 206 -10 5 1013 491 230 7 15 chr12 56177011 56177148 -65080382 + L1_Rod LINE L1 5647 5782 -65 5 1013 638 284 26 5 chr12 56177163 56177358 -65080172 + ID_B1 SINE B4 21 219 -5 5 1013 288 310 94 34 chr12 56177470 56177494 -65080036 + ID SINE ID 51 81 -143 5 1013 401 261 41 57 chr12 56177494 56177616 -65079914 + PB1D9 SINE Alu 1 120 0 5 1013 1053 148 0 0 chr12 56177670 56177819 -65079711 + B1_Mur3 SINE Alu 1 149 0 5 1013 551 258 19 102 chr12 56177907 56178123 -65079407 + B3A SINE B2 1 198 0 5 1013 558 257 51 26 chr12 56178145 56178301 -65079229 + RSINE1 SINE B4 6 165 0 5 1013 747 234 36 89 chr12 56178534 56178782 -65078748 - B4 SINE B4 -4 288 54 5 1013 596 283 25 207 chr12 56178878 56179030 -65078500 + RLTR18B LTR ERVK 1 145 -367 5 1013 868 178 147 5 chr12 56179030 56179228 -65078302 + URR1A DNA MER1_type 1 226 0 5 1013 596 283 25 207 chr12 56179228 56179432 -65078098 + RLTR18B LTR ERVK 146 292 -220 5 1013 1161 116 0 23 chr12 56179754 56179931 -65077599 + B2_Mm2 SINE B2 4 176 -19 5 1013 382 217 391 0 chr12 56180167 56180328 -65077202 + ID_B1 SINE B4 1 224 0 5 1013 47 0 0 0 chr12 56182690 56182737 -65074793 + AT_rich Low_complexity Low_complexity 1 47 0 5 1013 731 186 0 23 chr12 56182747 56182879 -65074651 - B3 SINE B2 -86 130 2 5 1013 302 303 26 35 chr12 56183415 56183528 -65074002 + PB1 SINE Alu 16 127 0 5 1013 2106 135 100 8 chr12 56183564 56183944 -65073586 - RMER6A LTR ERVK 0 756 342 5 1013 192 40 0 0 chr12 56184021 56184046 -65073484 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1013 355 283 0 21 chr12 56184052 56184146 -65073384 - PB1 SINE Alu 0 127 36 5 1013 747 163 82 0 chr12 56184619 56184754 -65072776 - B1_Mus1 SINE Alu 0 148 3 5 1013 230 257 51 51 chr12 56184754 56184807 -65072723 - ORR1B1-int LTR MaLR -853 656 604 5 1013 203 121 69 0 chr12 56184813 56184871 -65072659 + CT-rich Low_complexity Low_complexity 3 64 0 5 1013 225 297 198 0 chr12 56184895 56184986 -65072544 - B1_Mur1 SINE Alu -36 113 5 5 1013 306 262 48 0 chr12 56185038 56185122 -65072408 - B4A SINE B4 -3 289 202 5 1013 916 181 178 3 chr12 56185159 56185452 -65072078 - Lx9 LINE L1 -2 7642 7299 5 1013 1571 236 166 41 chr12 56185444 56186166 -65071364 - Lx9 LINE L1 -846 6798 5978 5 1013 1297 105 26 10 chr12 56186166 56186358 -65071172 - B2_Mm2 SINE B2 0 195 1 5 1013 1571 236 166 41 chr12 56186358 56186413 -65071117 - Lx9 LINE L1 -1667 5977 5924 5 1013 785 220 119 10 chr12 56186462 56186655 -65070875 - B4A SINE B4 -74 218 5 5 1013 928 90 45 0 chr12 56186941 56187075 -65070455 - B1_Mus1 SINE Alu -7 141 2 5 1013 604 148 5 286 chr12 56187082 56187281 -65070249 - B1_Mm SINE Alu 0 147 5 5 1013 933 240 14 9 chr12 56187304 56187514 -65070016 - B3 SINE B2 -4 212 2 5 1013 32 48 0 16 chr12 56187847 56187875 -65069655 + AT_rich Low_complexity Low_complexity 1 28 0 5 1013 529 231 0 57 chr12 56187875 56187999 -65069531 - PB1D9 SINE Alu -3 117 1 5 1013 32 48 0 16 chr12 56187999 56188034 -65069496 + AT_rich Low_complexity Low_complexity 1 35 0 5 1013 567 228 30 38 chr12 56188036 56188168 -65069362 - B1F2 SINE Alu -13 136 6 5 1013 934 209 59 0 chr12 56188394 56188581 -65068949 - B3 SINE B2 -4 212 15 5 1013 422 119 12 0 chr12 56188912 56188996 -65068534 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 5 1013 625 159 142 8 chr12 56189434 56189561 -65067969 - B1_Mur1 SINE Alu -4 145 2 5 1013 604 244 68 42 chr12 56190425 56190611 -65066919 - B3A SINE B2 -6 189 14 5 1013 404 250 129 18 chr12 56191367 56191483 -65066047 + B1F SINE Alu 7 127 -21 5 1013 411 343 44 7 chr12 56192423 56192558 -65064972 + RSINE1 SINE B4 26 165 0 5 1013 968 208 48 24 chr12 56192642 56192849 -65064681 + B3 SINE B2 1 212 -4 5 1013 521 289 40 20 chr12 56192888 56193040 -65064490 - B3A SINE B2 -2 196 42 5 1013 262 274 135 10 chr12 56193069 56193165 -65064365 - L2b LINE L2 -15 3360 3253 5 1013 227 302 175 0 chr12 56193237 56193300 -65064230 - ID4 SINE ID -6 77 4 5 1013 2189 128 118 2 chr12 56193469 56193868 -65063662 - BGLII_A LTR ERVK 0 445 1 5 1013 349 182 37 61 chr12 56193954 56194036 -65063494 + PB1D9 SINE Alu 41 120 0 5 1013 1104 286 92 121 chr12 56194035 56194262 -65063268 + Charlie1a DNA MER1_type 187 406 -1049 5 1013 1171 47 0 39 chr12 56194262 56194416 -65063114 - B1_Mus1 SINE Alu 0 148 1 5 1013 1104 286 92 121 chr12 56194416 56194983 -65062547 + Charlie1a DNA MER1_type 407 958 -497 5 1013 363 295 123 18 chr12 56195378 56195478 -65062052 - MER58A DNA MER1_type -57 167 56 5 1013 390 236 55 28 chr12 56195478 56195587 -65061943 + B1F SINE Alu 3 114 -35 5 1013 361 314 63 16 chr12 56195705 56195831 -65061699 + ID_B1 SINE B4 91 222 -2 5 1013 242 267 33 0 chr12 56196044 56196104 -65061426 + MER33 DNA MER1_type 10 71 -253 5 1013 277 306 74 0 chr12 56196463 56196571 -65060959 - RSINE1 SINE B4 -8 157 42 5 1013 21 57 0 0 chr12 56196931 56196966 -65060564 + AT_rich Low_complexity Low_complexity 1 35 0 5 1013 247 271 44 126 chr12 56197074 56197209 -65060321 + PB1 SINE Alu 3 126 -1 5 1013 250 217 33 16 chr12 56197298 56197359 -65060171 + B1F SINE Alu 67 128 -21 5 1013 1158 50 0 0 chr12 56197534 56197673 -65059857 - B1_Mus1 SINE Alu -9 139 1 5 1013 207 0 0 0 chr12 56197695 56197718 -65059812 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 5 1013 373 271 27 27 chr12 56198344 56198454 -65059076 - B1_Mm SINE Alu -31 116 7 5 1013 261 207 155 0 chr12 56198583 56198641 -65058889 + RSINE1 SINE B4 78 144 -21 5 1013 225 0 0 0 chr12 56198672 56198697 -65058833 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1013 940 189 95 0 chr12 56198846 56199036 -65058494 - MTC LTR MaLR 0 421 214 5 1013 396 204 61 0 chr12 56199018 56199116 -65058414 - MTC LTR MaLR -317 104 1 5 1013 323 280 13 0 chr12 56199180 56199255 -65058275 + ID4_ SINE ID 1 76 -7 5 1013 1373 57 6 6 chr12 56199323 56199500 -65058030 + B2_Mm2 SINE B2 1 177 -18 5 1013 556 270 16 8 chr12 56199533 56199660 -65057870 + RSINE1 SINE B4 2 129 -36 5 1013 441 294 16 32 chr12 56199956 56200079 -65057451 + B1F1 SINE Alu 23 143 -6 5 1013 911 224 24 28 chr12 56200148 56200359 -65057171 - B3 SINE B2 -6 210 1 5 1013 368 227 171 60 chr12 56201345 56201462 -65056068 + B1_Mur1 SINE Alu 1 130 -19 5 1013 1717 126 134 71 chr12 56201468 56201819 -65055711 - ORR1C1 LTR MaLR 0 378 6 5 1013 431 198 0 42 chr12 56201976 56202071 -65055459 - B1_Mur4 SINE Alu -5 145 55 5 1013 212 237 0 0 chr12 56202555 56202593 -65054937 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 5 1013 237 197 242 0 chr12 56203036 56203102 -65054428 - ID4 SINE ID 0 83 2 5 1013 400 196 71 9 chr12 56203576 56203689 -65053841 - BC1_Mm scRNA scRNA -30 122 3 5 1013 277 206 31 16 chr12 56203694 56203758 -65053772 - PB1D10 SINE Alu -7 110 46 5 1013 804 169 13 39 chr12 56203812 56203966 -65053564 + B1_Mur4 SINE Alu 1 150 0 5 1013 930 196 29 0 chr12 56203951 56204124 -65053406 - ORR1D1 LTR MaLR -196 178 1 5 1013 299 230 0 63 chr12 56204124 56204190 -65053340 - B1F1 SINE Alu -88 61 1 5 1013 263 265 232 14 chr12 56204585 56204601 -65052929 - B4 SINE B4 -44 248 85 5 1013 397 162 68 110 chr12 56204601 56204719 -65052811 - B1_Mur2 SINE Alu 0 117 5 5 1013 441 236 99 81 chr12 56205026 56205187 -65052343 - RSINE1 SINE B4 0 165 2 5 1013 214 293 17 33 chr12 56205207 56205267 -65052263 - B3A SINE B2 -120 78 20 5 1013 207 225 0 0 chr12 56205311 56205351 -65052179 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5 1013 407 274 2 5 chr12 56205364 56205471 -65052059 - RSINE1 SINE B4 -185 107 2 5 1013 372 264 55 0 chr12 56205482 56205592 -65051938 - PB1D7 SINE Alu 0 120 5 5 1013 324 240 180 8 chr12 56205639 56205761 -65051769 - B1_Mur2 SINE Alu -5 144 2 5 1013 316 340 9 9 chr12 56205839 56205946 -65051584 - L1M5 LINE L1 -606 5558 5452 6 1013 439 227 65 136 chr12 56206962 56207161 -65050369 + B2_Mm2 SINE B2 2 186 -9 6 1013 1195 55 0 0 chr12 56207182 56207328 -65050202 + B1_Mus1 SINE Alu 1 146 -2 6 1013 291 234 16 0 chr12 56207342 56207406 -65050124 - B3 SINE B2 -150 66 2 6 1013 648 187 86 36 chr12 56207411 56207550 -65049980 - B1_Mus1 SINE Alu -2 146 1 6 1013 323 282 42 0 chr12 56207625 56207696 -65049834 - RSINE1 SINE B4 -29 136 63 6 1013 198 71 0 0 chr12 56207864 56207892 -65049638 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1013 450 179 12 23 chr12 56207957 56208043 -65049487 - PB1D10 SINE Alu 0 117 33 6 1013 518 250 58 0 chr12 56208465 56208585 -65048945 - B1F1 SINE Alu -19 130 4 6 1013 25 51 0 0 chr12 56208660 56208699 -65048831 + AT_rich Low_complexity Low_complexity 1 39 0 6 1013 540 281 130 16 chr12 56208800 56209053 -65048477 + B4A SINE B4 4 285 -7 6 1013 742 270 66 0 chr12 56209069 56209265 -65048265 + ID_B1 SINE B4 15 223 -1 6 1013 280 219 158 0 chr12 56209763 56209845 -65047685 + BC1_Mm scRNA scRNA 1 95 -57 6 1013 342 316 73 7 chr12 56210096 56210233 -65047297 + B1F1 SINE Alu 1 146 -3 6 1013 529 157 119 40 chr12 56210414 56210540 -65046990 - B1_Mur4 SINE Alu -1 149 14 6 1013 422 245 87 40 chr12 56210418 56210567 -65046963 - B4 SINE B4 -69 223 68 6 1013 345 318 46 124 chr12 56210807 56210915 -65046615 + ID_B1 SINE B4 3 168 -56 6 1013 363 244 76 13 chr12 56210915 56210994 -65046536 + PB1D9 SINE Alu 14 97 -23 6 1013 197 0 0 67 chr12 56211448 56211478 -65046052 + (CCCCCT)n Simple_repeat Simple_repeat 5 32 0 6 1013 1177 115 0 0 chr12 56211572 56211737 -65045793 + B2_Mm2 SINE B2 5 169 -26 6 1013 195 42 0 0 chr12 56211741 56211765 -65045765 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1013 414 202 109 20 chr12 56211811 56211912 -65045618 + B1_Mur1 SINE Alu 9 118 -31 6 1013 221 342 204 25 chr12 56212433 56212634 -65044896 - B4 SINE B4 -51 241 5 6 1013 877 274 20 69 chr12 56212701 56213007 -65044523 - B4A SINE B4 0 292 2 6 1013 34 0 0 0 chr12 56213016 56213050 -65044480 + AT_rich Low_complexity Low_complexity 1 34 0 6 1013 444 215 144 32 chr12 56213058 56213183 -65044347 - B1F2 SINE Alu -9 140 2 6 1013 504 275 133 71 chr12 56213226 56213422 -65044108 - ID_B1 SINE B4 -9 215 8 6 1013 209 352 126 48 chr12 56213503 56213670 -65043860 + MIRb SINE MIR 60 239 -29 6 1013 226 327 0 0 chr12 56214762 56214814 -65042716 - RSINE1 SINE B4 -4 161 110 6 1013 631 242 30 64 chr12 56214792 56214836 -65042694 - RSINE1 SINE B4 -16 276 211 6 1013 863 103 16 8 chr12 56214836 56214963 -65042567 - B1_Mur2 SINE Alu -1 148 21 6 1013 631 242 30 64 chr12 56214963 56215098 -65042432 - RSINE1 SINE B4 -16 210 3 6 1013 425 66 0 16 chr12 56215112 56215174 -65042356 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 6 1013 363 273 146 66 chr12 56215227 56215439 -65042091 - B4 SINE B4 -18 274 46 6 1013 338 246 0 0 chr12 56215424 56215489 -65042041 - B1F SINE Alu -62 87 23 6 1013 395 252 57 28 chr12 56215535 56215641 -65041889 + PB1D10 SINE Alu 1 109 -8 6 1013 963 211 197 68 chr12 56216064 56216516 -65041014 - MT2B LTR ERVL -1 474 1 6 1013 1209 55 0 0 chr12 56216660 56216805 -65040725 - B1_Mus2 SINE Alu -2 145 1 6 1013 2791 178 129 48 chr12 56216987 56217533 -65039997 - Lx9 LINE L1 -2 7642 7062 6 1013 1243 34 0 0 chr12 56217533 56217680 -65039850 + B1_Mm SINE Alu 1 147 0 6 1013 2791 178 129 48 chr12 56217680 56217959 -65039571 - Lx9 LINE L1 -583 7061 6750 6 1013 938 214 47 17 chr12 56217964 56218199 -65039331 - ORR1D1 LTR MaLR -100 259 6 6 1013 2331 67 32 3 chr12 56218469 56218784 -65038746 - ORR1A2 LTR MaLR 0 327 4 6 1013 509 182 161 24 chr12 56219105 56219229 -65038301 - B1_Mus2 SINE Alu -6 141 1 6 1013 1209 54 0 0 chr12 56219473 56219620 -65037910 + B1_Mm SINE Alu 1 147 0 6 1013 222 37 0 0 chr12 56219620 56219647 -65037883 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1013 657 251 61 10 chr12 56219922 56220119 -65037411 + B3 SINE B2 2 208 -8 6 1013 514 151 108 0 chr12 56220150 56220243 -65037287 - B1_Mus2 SINE Alu 0 147 45 6 1013 620 215 149 41 chr12 56220347 56220541 -65036989 - B3 SINE B2 0 216 2 6 1013 499 268 38 82 chr12 56220583 56220766 -65036764 - B3A SINE B2 -23 175 1 6 1013 390 275 76 0 chr12 56220887 56221018 -65036512 + B1_Mur2 SINE Alu 2 142 -7 6 1013 1165 48 0 0 chr12 56221286 56221432 -65036098 + B1_Mm SINE Alu 2 147 0 6 1013 205 140 16 66 chr12 56221482 56221543 -65035987 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 6 1013 414 299 8 17 chr12 56221543 56221662 -65035868 - PB1 SINE Alu -8 119 2 6 1013 217 237 186 0 chr12 56221697 56221794 -65035736 + MIR SINE MIR 114 228 -34 6 1013 245 186 107 67 chr12 56221906 56221981 -65035549 - ID4 SINE ID -5 78 1 6 1013 423 38 0 0 chr12 56222094 56222147 -65035383 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1013 747 154 20 16 chr12 56222479 56222631 -65034899 + B3 SINE B2 3 112 -104 6 1013 317 135 19 0 chr12 56222622 56222674 -65034856 + B3 SINE B2 60 112 -104 6 1013 302 154 19 0 chr12 56222665 56222717 -65034813 + B3 SINE B2 60 112 -104 6 1013 317 135 19 0 chr12 56222708 56222760 -65034770 + B3 SINE B2 60 112 -104 6 1013 389 225 42 53 chr12 56222751 56222904 -65034626 + B3 SINE B2 60 207 -9 6 1013 38 18 0 18 chr12 56222957 56222973 -65034557 + AT_rich Low_complexity Low_complexity 1 16 0 6 1013 1552 56 0 0 chr12 56222973 56223151 -65034379 + B2_Mm1a SINE B2 2 179 -14 6 1013 38 18 0 18 chr12 56223151 56223190 -65034340 + AT_rich Low_complexity Low_complexity 1 39 0 6 1013 3585 179 131 71 chr12 56223648 56224525 -65033005 + RMER21A LTR ERV1 18 947 0 6 1013 931 105 229 7 chr12 56224606 56224759 -65032771 - B2_Mm2 SINE B2 -7 188 2 6 1013 408 86 27 41 chr12 56224826 56224899 -65032631 + PB1D9 SINE Alu 48 119 -1 6 1013 231 88 0 0 chr12 56225440 56225474 -65032056 + (CCCCG)n Simple_repeat Simple_repeat 5 38 0 6 1013 225 214 133 0 chr12 56226272 56226370 -65031160 - Charlie5 DNA MER1_type -88 2536 2426 6 1013 483 275 93 14 chr12 56227122 56227336 -65030194 - RMER15 LTR ERVL 0 575 345 6 1013 641 209 80 0 chr12 56227631 56227794 -65029736 - B3A SINE B2 -22 176 1 6 1013 709 244 7 0 chr12 56228149 56228284 -65029246 + B1F SINE Alu 14 149 0 6 1013 252 308 47 81 chr12 56228158 56228416 -65029114 - RMER17D2 LTR ERVK -210 599 351 6 1013 446 264 232 6 chr12 56228953 56229117 -65028413 - B3 SINE B2 -9 207 7 6 1013 897 121 370 0 chr12 56229524 56229689 -65027841 - URR1A DNA MER1_type 0 226 1 6 126 864 198 80 10 chr12 56229800 56229999 -65027531 - B3 SINE B2 -3 213 1 6 1014 2847 50 3 11 chr12 56230015 56230362 -65027168 - L1Md_F2 LINE L1 -3 6579 6236 6 1014 498 257 29 0 chr12 56230373 56230478 -65027052 - ID_B1 SINE B4 -26 198 91 6 1014 647 211 31 8 chr12 56230777 56230906 -65026624 + B4 SINE B4 106 237 -55 6 1014 246 32 0 0 chr12 56230983 56231014 -65026516 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1014 905 185 100 25 chr12 56231140 56231340 -65026190 + B3 SINE B2 2 216 0 6 1014 24 32 0 0 chr12 56232235 56232266 -65025264 + AT_rich Low_complexity Low_complexity 1 31 0 6 1014 852 156 0 0 chr12 56232611 56232739 -65024791 + B3 SINE B2 2 129 -87 6 1014 622 176 10 0 chr12 56232821 56232923 -65024607 + ID_B1 SINE B4 120 222 -2 6 1014 459 0 0 0 chr12 56233229 56233280 -65024250 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1014 912 220 91 56 chr12 56233310 56233652 -65023878 - L1MB8 LINE L1 -274 5904 5551 6 1014 313 214 29 0 chr12 56233675 56233745 -65023785 - B3 SINE B2 -4 212 141 6 1014 334 189 0 0 chr12 56233737 56233790 -65023740 - PB1D9 SINE Alu -67 53 1 6 1014 346 253 57 11 chr12 56233838 56233926 -65023604 + B1F SINE Alu 43 134 -15 6 1014 490 181 73 21 chr12 56233958 56234054 -65023476 - PB1D7 SINE Alu -2 118 18 6 1014 255 248 56 19 chr12 56234075 56234182 -65023348 - L1MB8 LINE L1 -1146 5000 4890 6 1014 1000 188 74 18 chr12 56234188 56234405 -65023125 - ORR1C2 LTR MaLR 0 384 156 6 1014 251 135 0 0 chr12 56234390 56234427 -65023103 - ORR1C2 LTR MaLR -354 40 4 6 1014 395 283 92 28 chr12 56234654 56234776 -65022754 - L1MB8 LINE L1 -1444 4702 4571 6 1014 1125 125 177 0 chr12 56234776 56234968 -65022562 + URR1A DNA MER1_type 1 226 0 6 1014 395 283 92 28 chr12 56234968 56234987 -65022543 - L1MB8 LINE L1 -1576 4570 4552 6 1014 758 236 58 58 chr12 56235389 56235596 -65021934 - B4 SINE B4 -2 290 84 6 1014 246 32 0 0 chr12 56235596 56235627 -65021903 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1014 1246 28 7 27 chr12 56235627 56235775 -65021755 - B1_Mus2 SINE Alu -2 145 1 6 1014 797 236 0 13 chr12 56235873 56236023 -65021507 + B1_Mur2 SINE Alu 2 149 0 6 1014 676 171 127 8 chr12 56236076 56236194 -65021336 + B1_Mur2 SINE Alu 5 136 -13 6 1014 270 0 0 0 chr12 56236195 56236225 -65021305 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1014 485 205 83 25 chr12 56236893 56237013 -65020517 + RSINE1 SINE B4 3 129 -36 6 1014 213 278 111 0 chr12 56237280 56237352 -65020178 - ID2 SINE ID 0 83 4 6 1014 181 300 117 0 chr12 56237535 56237595 -65019935 + MIRb SINE MIR 9 75 -193 6 1014 242 267 129 0 chr12 56237656 56237757 -65019773 - MTE2b LTR MaLR -14 365 252 7 1014 311 190 85 57 chr12 56237837 56237943 -65019587 + PB1D7 SINE Alu 4 112 -8 7 1014 1258 48 0 14 chr12 56238732 56238879 -65018651 + B1_Mus2 SINE Alu 1 145 -2 7 1014 198 316 10 69 chr12 56239153 56239244 -65018286 + L2c LINE L2 3201 3313 -74 7 1014 462 88 0 0 chr12 56239499 56239567 -65017963 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1014 303 286 0 28 chr12 56239568 56239640 -65017890 - ID4_ SINE ID -11 72 3 7 1014 21 0 0 0 chr12 56240049 56240070 -65017460 + AT_rich Low_complexity Low_complexity 1 21 0 7 1014 331 259 267 0 chr12 56240279 56240395 -65017135 + B1_Mur1 SINE Alu 1 147 -2 7 1014 494 259 0 17 chr12 56241835 56241953 -65015577 + PB1D10 SINE Alu 1 116 -1 7 1014 421 266 114 7 chr12 56242164 56242304 -65015226 + RSINE1 SINE B4 3 157 -8 7 1014 395 310 25 105 chr12 56242325 56242487 -65015043 + B4 SINE B4 70 218 -74 7 1014 797 174 0 53 chr12 56242343 56242495 -65015035 + B1_Mur1 SINE Alu 6 149 0 7 1014 1622 53 11 0 chr12 56242891 56243081 -65014449 + B2_Mm1t SINE B2 2 193 0 7 1014 202 234 192 13 chr12 56243441 56243519 -65014011 - MIRc SINE MIR -111 157 66 7 1014 253 217 33 33 chr12 56243600 56243676 -65013854 - ID4 SINE ID -62 90 15 7 1014 716 43 0 0 chr12 56243904 56243996 -65013534 - B1_Mus2 SINE Alu -55 92 1 7 1014 1000 203 52 5 chr12 56244777 56244970 -65012560 - B3 SINE B2 -14 202 1 7 1014 267 313 78 29 chr12 56245066 56245168 -65012362 + ID_B1 SINE B4 88 194 -30 7 1014 1121 219 5 18 chr12 56245456 56245675 -65011855 + B3 SINE B2 1 216 0 7 1014 1188 126 46 6 chr12 56245688 56245863 -65011667 - B2_Mm2 SINE B2 -11 184 3 7 1014 515 270 131 15 chr12 56246739 56246938 -65010592 + MER2 DNA MER2_type 11 232 -113 7 1014 354 230 80 0 chr12 56246985 56247085 -65010445 + PB1D10 SINE Alu 3 110 -7 7 1014 660 269 80 10 chr12 56247122 56247321 -65010209 + B4 SINE B4 6 218 -74 7 1014 591 237 44 0 chr12 56247507 56247642 -65009888 - B1F SINE Alu -7 142 2 7 1014 390 216 87 35 chr12 56247763 56247878 -65009652 + ID_B1 SINE B4 3 123 -101 7 1014 633 199 52 0 chr12 56248181 56248317 -65009213 - URR1B DNA MER1_type -3 222 80 7 1014 239 299 28 85 chr12 56248339 56248445 -65009085 - ID_B1 SINE B4 -41 183 84 7 1014 256 337 36 0 chr12 56248363 56248446 -65009084 - PB1D10 SINE Alu -30 87 2 7 1014 243 241 11 92 chr12 56248372 56248459 -65009071 - MT2B2 LTR ERVL -349 235 156 7 1014 360 306 30 10 chr12 56248482 56248581 -65008949 - PB1D10 SINE Alu -6 111 11 7 1014 242 205 269 0 chr12 56248639 56248717 -65008813 + B1_Mus2 SINE Alu 1 99 -48 7 1014 207 0 0 0 chr12 56248727 56248750 -65008780 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 7 1014 1421 89 16 5 chr12 56248750 56248930 -65008600 - B2_Mm2 SINE B2 -12 183 1 7 1014 469 228 144 38 chr12 56248957 56249089 -65008441 + B1_Mur1 SINE Alu 2 147 -2 7 1014 311 216 121 20 chr12 56249287 56249386 -65008144 + PB1D7 SINE Alu 2 110 -10 7 1014 958 115 65 0 chr12 56249611 56249750 -65007780 - B1_Mur4 SINE Alu -1 149 2 7 1014 389 281 69 15 chr12 56249865 56249995 -65007535 + ID_B1 SINE B4 81 217 -7 7 1014 255 130 0 0 chr12 56250978 56251032 -65006498 + (A)n Simple_repeat Simple_repeat 1 54 0 7 1014 1348 108 38 0 chr12 56251035 56251221 -65006309 + B2_Mm2 SINE B2 2 194 -1 7 1014 1139 92 80 25 chr12 56251428 56251628 -65005902 + ORR1B2 LTR MaLR 136 346 -21 7 1014 422 285 21 118 chr12 56251958 56252145 -65005385 + MTD LTR MaLR 253 421 0 7 1014 436 223 0 97 chr12 56252172 56252286 -65005244 + PB1D7 SINE Alu 18 120 0 7 1014 260 102 71 14 chr12 56252592 56252662 -65004868 + CT-rich Low_complexity Low_complexity 3 76 0 7 1014 344 270 78 23 chr12 56253289 56253427 -65004103 + RSINE1 SINE B4 2 149 -16 7 1014 1053 24 0 0 chr12 56254213 56254339 -65003191 - B1_Mm SINE Alu 0 147 22 7 1014 1286 104 0 23 chr12 56254403 56254580 -65002950 + B2_Mm2 SINE B2 4 176 -19 7 1014 493 205 391 0 chr12 56254816 56254977 -65002553 + ID_B1 SINE B4 1 224 0 7 1014 1750 27 0 0 chr12 56255233 56255420 -65002110 - B2_Mm1a SINE B2 -6 187 1 7 1014 762 180 35 46 chr12 56257535 56257723 -64999807 - B3 SINE B2 -3 192 2 7 1014 297 303 26 35 chr12 56258259 56258372 -64999158 + PB1 SINE Alu 16 127 0 7 1014 2136 133 100 8 chr12 56258408 56258788 -64998742 - RMER6A LTR ERVK 0 756 342 7 1014 279 0 0 0 chr12 56258865 56258896 -64998634 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1014 382 272 0 21 chr12 56258902 56258996 -64998534 - PB1 SINE Alu 0 127 36 7 1014 751 163 82 0 chr12 56259468 56259603 -64997927 - B1_Mus1 SINE Alu 0 148 3 7 1014 233 257 51 51 chr12 56259603 56259656 -64997874 - ORR1B1-int LTR MaLR -853 656 604 7 1014 203 121 69 0 chr12 56259662 56259720 -64997810 + CT-rich Low_complexity Low_complexity 3 64 0 7 1014 234 286 198 0 chr12 56259744 56259835 -64997695 - B1_Mur1 SINE Alu -36 113 5 7 1014 301 274 48 0 chr12 56259884 56259968 -64997562 - B4A SINE B4 -3 289 202 7 1014 1045 178 178 3 chr12 56260005 56260298 -64997232 - Lx9 LINE L1 -2 7642 7299 7 1014 1880 225 187 49 chr12 56260290 56260999 -64996531 - Lx9 LINE L1 -846 6798 5979 7 1014 1394 105 26 10 chr12 56260999 56261191 -64996339 - B2_Mm2 SINE B2 0 195 1 7 1014 1880 225 187 49 chr12 56261191 56261293 -64996237 - Lx9 LINE L1 -1666 5978 5876 7 1014 791 220 119 10 chr12 56261295 56261488 -64996042 - B4A SINE B4 -74 218 5 7 1014 1686 41 0 15 chr12 56261559 56261755 -64995775 + B2_Mm1t SINE B2 1 193 0 7 1014 989 90 45 0 chr12 56261988 56262122 -64995408 - B1_Mus1 SINE Alu -7 141 2 7 1014 666 148 5 286 chr12 56262139 56262338 -64995192 - B1_Mm SINE Alu 0 147 5 7 1014 1073 226 14 9 chr12 56262361 56262571 -64994959 - B3 SINE B2 -4 212 2 7 1014 28 51 0 17 chr12 56262904 56262932 -64994598 + AT_rich Low_complexity Low_complexity 1 28 0 7 1014 558 239 0 57 chr12 56262932 56263056 -64994474 - PB1D9 SINE Alu -3 117 1 7 1014 28 51 0 17 chr12 56263056 56263087 -64994443 + AT_rich Low_complexity Low_complexity 1 31 0 7 1014 648 213 30 30 chr12 56263089 56263220 -64994310 - B1F2 SINE Alu -13 136 6 7 1014 915 234 31 0 chr12 56263443 56263635 -64993895 - B3 SINE B2 -4 212 15 7 1014 392 136 11 0 chr12 56263966 56264054 -64993476 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 7 1014 677 163 138 8 chr12 56264488 56264618 -64992912 - B1_Mur1 SINE Alu -1 148 2 7 1014 596 241 73 37 chr12 56265507 56265671 -64991859 - B3A SINE B2 -15 183 14 7 1014 409 250 129 18 chr12 56266427 56266543 -64990987 + B1F SINE Alu 7 127 -21 7 1014 409 343 44 7 chr12 56267483 56267618 -64989912 + RSINE1 SINE B4 26 165 0 7 1014 1054 208 48 24 chr12 56267702 56267909 -64989621 + B3 SINE B2 1 212 -4 7 1014 522 282 40 20 chr12 56267948 56268100 -64989430 - B3A SINE B2 -2 196 42 7 1014 279 253 135 10 chr12 56268129 56268225 -64989305 - L2b LINE L2 -15 3360 3253 7 1014 226 302 175 0 chr12 56268297 56268360 -64989170 - ID4 SINE ID -6 77 4 7 1014 2377 128 118 2 chr12 56268529 56268928 -64988602 - BGLII_A LTR ERVK 0 445 1 7 1014 350 182 37 61 chr12 56269014 56269096 -64988434 + PB1D9 SINE Alu 41 120 0 7 1014 1042 280 96 124 chr12 56269095 56269322 -64988208 + Charlie1a DNA MER1_type 187 406 -1049 7 1014 1242 47 0 39 chr12 56269322 56269476 -64988054 - B1_Mus1 SINE Alu 0 148 1 7 1014 1042 280 96 124 chr12 56269476 56270043 -64987487 + Charlie1a DNA MER1_type 407 958 -497 7 1014 358 295 123 18 chr12 56270438 56270538 -64986992 - MER58A DNA MER1_type -57 167 56 7 1014 394 236 55 28 chr12 56270538 56270647 -64986883 + B1F SINE Alu 3 114 -35 7 1014 355 314 63 16 chr12 56270765 56270891 -64986639 + ID_B1 SINE B4 91 222 -2 7 1014 238 267 33 0 chr12 56271104 56271164 -64986366 + MER33 DNA MER1_type 10 71 -253 7 1014 275 306 74 0 chr12 56271523 56271631 -64985899 - RSINE1 SINE B4 -8 157 42 7 1014 21 57 0 0 chr12 56271991 56272026 -64985504 + AT_rich Low_complexity Low_complexity 1 35 0 7 1014 254 271 44 126 chr12 56272134 56272269 -64985261 + PB1 SINE Alu 3 126 -1 7 1014 251 217 33 16 chr12 56272358 56272419 -64985111 + B1F SINE Alu 67 128 -21 7 1014 1223 50 0 0 chr12 56272594 56272733 -64984797 - B1_Mus1 SINE Alu -9 139 1 7 1014 207 0 0 0 chr12 56272755 56272778 -64984752 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 7 1014 375 271 27 27 chr12 56273404 56273514 -64984016 - B1_Mm SINE Alu -31 116 7 7 1014 240 267 112 95 chr12 56273413 56273529 -64984001 - B4 SINE B4 -94 198 81 7 1014 263 207 155 0 chr12 56273643 56273701 -64983829 + RSINE1 SINE B4 78 144 -21 7 1014 225 0 0 0 chr12 56273732 56273757 -64983773 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1014 947 189 95 0 chr12 56273906 56274096 -64983434 - MTC LTR MaLR 0 421 214 7 1014 396 204 61 0 chr12 56274078 56274176 -64983354 - MTC LTR MaLR -317 104 1 7 1014 349 280 13 0 chr12 56274240 56274315 -64983215 + ID4_ SINE ID 1 76 -7 7 1014 1469 57 6 6 chr12 56274383 56274560 -64982970 + B2_Mm2 SINE B2 1 177 -18 7 1014 552 270 16 8 chr12 56274593 56274720 -64982810 + RSINE1 SINE B4 2 129 -36 7 1014 432 294 16 32 chr12 56275016 56275139 -64982391 + B1F1 SINE Alu 23 143 -6 8 1014 996 220 33 28 chr12 56275204 56275419 -64982111 - B3 SINE B2 0 216 1 8 1014 410 227 171 60 chr12 56276405 56276522 -64981008 + B1_Mur1 SINE Alu 1 130 -19 8 1014 1720 126 134 71 chr12 56276528 56276879 -64980651 - ORR1C1 LTR MaLR 0 378 6 8 1014 429 198 0 42 chr12 56277036 56277131 -64980399 - B1_Mur4 SINE Alu -5 145 55 8 1014 212 237 0 0 chr12 56277615 56277653 -64979877 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 8 1014 237 197 242 0 chr12 56278096 56278162 -64979368 - ID4 SINE ID 0 83 2 8 1014 367 196 71 9 chr12 56278636 56278749 -64978781 - BC1_Mm scRNA scRNA -30 122 3 8 1014 257 206 31 16 chr12 56278754 56278818 -64978712 - PB1D10 SINE Alu -7 110 46 8 1014 749 169 13 39 chr12 56278872 56279026 -64978504 + B1_Mur4 SINE Alu 1 150 0 8 1014 871 196 29 0 chr12 56279011 56279184 -64978346 - ORR1D1 LTR MaLR -196 178 1 8 1014 270 213 0 2 chr12 56279187 56279250 -64978280 - B1F1 SINE Alu -87 62 1 8 1014 367 162 68 110 chr12 56279661 56279779 -64977751 - B1_Mur2 SINE Alu 0 117 5 8 1014 438 243 124 35 chr12 56280102 56280247 -64977283 - RSINE1 SINE B4 -6 159 2 8 1014 207 225 0 0 chr12 56280371 56280411 -64977119 + (TTA)n Simple_repeat Simple_repeat 3 42 0 8 1014 379 266 0 0 chr12 56280452 56280531 -64976999 - RSINE1 SINE B4 -84 81 3 8 1014 367 264 55 0 chr12 56280542 56280652 -64976878 - PB1D7 SINE Alu 0 120 5 8 1014 328 248 180 8 chr12 56280699 56280821 -64976709 - B1_Mur2 SINE Alu -5 144 2 8 1014 377 209 62 136 chr12 56282044 56282221 -64975309 + B2_Mm2 SINE B2 23 186 -9 8 1014 1204 55 0 0 chr12 56282242 56282388 -64975142 + B1_Mus1 SINE Alu 1 146 -2 8 1014 269 234 16 0 chr12 56282402 56282466 -64975064 - B3 SINE B2 -150 66 2 8 1014 612 187 86 36 chr12 56282471 56282610 -64974920 - B1_Mus1 SINE Alu -2 146 1 8 1014 297 282 42 0 chr12 56282685 56282756 -64974774 - RSINE1 SINE B4 -29 136 63 8 1014 198 71 0 0 chr12 56282924 56282952 -64974578 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 8 1014 420 179 12 23 chr12 56283017 56283103 -64974427 - PB1D10 SINE Alu 0 117 33 8 1014 516 250 58 0 chr12 56283525 56283645 -64973885 - B1F1 SINE Alu -19 130 4 8 1014 25 51 0 0 chr12 56283720 56283759 -64973771 + AT_rich Low_complexity Low_complexity 1 39 0 8 1014 470 279 127 5 chr12 56283860 56284065 -64973465 + B4A SINE B4 4 233 -59 8 1014 657 270 66 0 chr12 56284129 56284325 -64973205 + ID_B1 SINE B4 15 223 -1 8 1014 256 219 158 0 chr12 56284823 56284905 -64972625 + BC1_Mm scRNA scRNA 1 95 -57 8 1014 295 316 73 7 chr12 56285156 56285293 -64972237 + B1F1 SINE Alu 1 146 -3 8 1014 485 157 119 40 chr12 56285474 56285600 -64971930 - B1_Mur4 SINE Alu -1 149 14 8 1014 364 245 87 40 chr12 56285478 56285627 -64971903 - B4 SINE B4 -69 223 68 8 1014 279 318 46 124 chr12 56285867 56285975 -64971555 + ID_B1 SINE B4 3 168 -56 8 1014 329 244 76 13 chr12 56285975 56286054 -64971476 + PB1D9 SINE Alu 14 97 -23 8 1014 197 0 0 67 chr12 56286508 56286538 -64970992 + (CCCCCT)n Simple_repeat Simple_repeat 5 32 0 8 1014 1203 101 47 0 chr12 56286632 56286801 -64970729 + B2_Mm2 SINE B2 5 181 -14 8 1014 195 42 0 0 chr12 56286801 56286825 -64970705 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 8 1014 380 202 109 20 chr12 56286871 56286972 -64970558 + B1_Mur1 SINE Alu 9 118 -31 8 1014 886 274 20 69 chr12 56287761 56288067 -64969463 - B4A SINE B4 0 292 2 8 1014 34 0 0 0 chr12 56288076 56288110 -64969420 + AT_rich Low_complexity Low_complexity 1 34 0 8 1014 445 215 144 32 chr12 56288118 56288243 -64969287 - B1F2 SINE Alu -9 140 2 8 1014 460 286 133 71 chr12 56288286 56288482 -64969048 - ID_B1 SINE B4 -9 215 8 8 1014 470 255 68 71 chr12 56289852 56289896 -64967634 - ID_B1 SINE B4 -16 276 149 8 1014 817 103 16 8 chr12 56289896 56290023 -64967507 - B1_Mur2 SINE Alu -1 148 21 8 1014 470 255 68 71 chr12 56290023 56290045 -64967485 - ID_B1 SINE B4 -16 148 79 8 1014 587 183 26 9 chr12 56290042 56290158 -64967372 - RSINE1 SINE B4 -44 121 4 8 1014 461 62 0 15 chr12 56290172 56290238 -64967292 + (GGGA)n Simple_repeat Simple_repeat 4 68 0 8 1014 313 267 167 83 chr12 56290291 56290495 -64967035 - B4 SINE B4 -18 274 54 8 1014 309 229 0 0 chr12 56290488 56290549 -64966981 - B1F SINE Alu -62 87 27 8 1014 390 252 57 28 chr12 56290599 56290705 -64966825 + PB1D10 SINE Alu 1 109 -8 8 1014 834 212 347 58 chr12 56291128 56291580 -64965950 - MT2B LTR ERVL -1 583 1 8 1014 1212 55 0 0 chr12 56291724 56291869 -64965661 - B1_Mus2 SINE Alu -2 145 1 8 1014 3141 177 129 48 chr12 56292051 56292597 -64964933 - Lx9 LINE L1 -2 7642 7062 8 1014 1250 34 0 0 chr12 56292597 56292744 -64964786 + B1_Mm SINE Alu 1 147 0 8 1014 3141 177 129 48 chr12 56292744 56293023 -64964507 - Lx9 LINE L1 -583 7061 6750 8 1014 882 209 38 14 chr12 56293054 56293263 -64964267 - ORR1D1 LTR MaLR -155 219 6 8 1014 2365 67 32 3 chr12 56293533 56293848 -64963682 - ORR1A2 LTR MaLR 0 327 4 8 1014 513 174 161 24 chr12 56294169 56294293 -64963237 - B1_Mm SINE Alu -6 141 1 8 1014 1219 54 0 0 chr12 56294537 56294684 -64962846 + B1_Mm SINE Alu 1 147 0 8 1014 222 37 0 0 chr12 56294684 56294711 -64962819 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1014 666 251 61 10 chr12 56294986 56295183 -64962347 + B3 SINE B2 2 208 -8 8 1014 484 151 108 0 chr12 56295214 56295307 -64962223 - B1_Mus2 SINE Alu 0 147 45 8 1014 23 33 0 0 chr12 56295409 56295439 -64962091 + AT_rich Low_complexity Low_complexity 1 30 0 8 1014 596 143 143 0 chr12 56295493 56295605 -64961925 - B3 SINE B2 -87 129 2 8 1014 446 268 38 82 chr12 56295647 56295830 -64961700 - B3A SINE B2 -23 175 1 8 1014 394 275 76 0 chr12 56295951 56296082 -64961448 + B1_Mur2 SINE Alu 2 142 -7 8 1014 1173 48 0 0 chr12 56296350 56296496 -64961034 + B1_Mm SINE Alu 2 147 0 8 1014 205 140 16 66 chr12 56296546 56296607 -64960923 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 8 1014 413 299 8 17 chr12 56296607 56296726 -64960804 - PB1 SINE Alu -8 119 2 8 1014 181 237 186 0 chr12 56296761 56296858 -64960672 + MIR SINE MIR 114 228 -34 8 1014 243 186 107 67 chr12 56296970 56297045 -64960485 - ID4 SINE ID -5 78 1 8 1014 423 38 0 0 chr12 56297158 56297211 -64960319 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1014 704 119 9 0 chr12 56297543 56297652 -64959878 + B3 SINE B2 3 112 -104 8 1014 278 173 19 0 chr12 56297643 56297695 -64959835 + B3 SINE B2 60 112 -104 8 1014 299 135 19 0 chr12 56297686 56297738 -64959792 + B3 SINE B2 60 112 -104 8 1014 283 154 19 0 chr12 56297729 56297781 -64959749 + B3 SINE B2 60 112 -104 8 1014 299 135 19 0 chr12 56297772 56297824 -64959706 + B3 SINE B2 60 112 -104 8 1014 365 243 35 46 chr12 56297815 56297968 -64959562 + B3 SINE B2 60 207 -9 8 1014 38 18 0 18 chr12 56298021 56298037 -64959493 + AT_rich Low_complexity Low_complexity 1 16 0 8 1014 1482 56 0 0 chr12 56298037 56298215 -64959315 + B2_Mm1a SINE B2 2 179 -14 8 1014 38 18 0 18 chr12 56298215 56298254 -64959276 + AT_rich Low_complexity Low_complexity 1 39 0 8 1014 3275 180 131 71 chr12 56298712 56299589 -64957941 + RMER21A LTR ERV1 18 947 0 8 1014 880 105 229 7 chr12 56299670 56299823 -64957707 - B2_Mm2 SINE B2 -7 188 2 8 1014 380 86 27 41 chr12 56299890 56299963 -64957567 + PB1D9 SINE Alu 48 119 -1 8 1014 231 88 0 0 chr12 56300504 56300538 -64956992 + (CCCCG)n Simple_repeat Simple_repeat 5 38 0 8 1014 24 32 0 0 chr12 56301347 56301378 -64956152 + AT_rich Low_complexity Low_complexity 1 31 0 8 1014 419 275 93 14 chr12 56302186 56302400 -64955130 - RMER15 LTR ERVL 0 575 345 8 1014 580 209 80 0 chr12 56302695 56302858 -64954672 - B3A SINE B2 -22 176 1 8 1014 661 244 7 0 chr12 56303213 56303348 -64954182 + B1F SINE Alu 14 149 0 8 1014 498 75 0 0 chr12 56303370 56303437 -64954093 + (GA)n Simple_repeat Simple_repeat 1 67 0 8 1014 389 264 232 6 chr12 56304017 56304181 -64953349 - B3 SINE B2 -9 207 7 8 1014 836 121 370 0 chr12 56304588 56304753 -64952777 - URR1A DNA MER1_type 0 226 1 8 1014 772 200 79 10 chr12 56304861 56305063 -64952467 - B3 SINE B2 0 216 1 8 1014 2705 50 3 11 chr12 56305079 56305426 -64952104 - L1Md_F2 LINE L1 -3 6579 6236 8 1014 462 257 29 0 chr12 56305437 56305542 -64951988 - ID_B1 SINE B4 -26 198 91 8 1014 598 211 31 8 chr12 56305841 56305970 -64951560 + B4 SINE B4 106 237 -55 8 1014 246 32 0 0 chr12 56306047 56306078 -64951452 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1014 835 185 100 25 chr12 56306204 56306404 -64951126 + B3 SINE B2 2 216 0 8 1014 24 32 0 0 chr12 56307299 56307330 -64950200 + AT_rich Low_complexity Low_complexity 1 31 0 8 1014 801 156 0 0 chr12 56307675 56307803 -64949727 + B3 SINE B2 2 129 -87 8 1014 586 176 10 0 chr12 56307885 56307987 -64949543 + ID_B1 SINE B4 120 222 -2 8 1014 459 0 0 0 chr12 56308293 56308344 -64949186 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1014 900 220 91 56 chr12 56308374 56308716 -64948814 - L1MB8 LINE L1 -274 5904 5551 9 1014 293 214 29 0 chr12 56308739 56308809 -64948721 - B3 SINE B2 -4 212 141 9 1014 311 189 0 0 chr12 56308801 56308854 -64948676 - PB1D9 SINE Alu -67 53 1 9 1014 325 227 15 0 chr12 56308924 56308990 -64948540 + B1F SINE Alu 68 134 -15 9 1014 452 181 73 21 chr12 56309022 56309118 -64948412 - PB1D7 SINE Alu -2 118 18 9 1014 247 248 56 19 chr12 56309139 56309246 -64948284 - L1MB8 LINE L1 -1146 5000 4890 9 1014 926 188 74 18 chr12 56309252 56309469 -64948061 - ORR1C2 LTR MaLR 0 384 156 9 1014 238 135 0 0 chr12 56309454 56309491 -64948039 - ORR1C2 LTR MaLR -354 40 4 9 1014 392 283 92 28 chr12 56309718 56309840 -64947690 - L1MB8 LINE L1 -1444 4702 4571 9 1014 1059 125 177 0 chr12 56309840 56310032 -64947498 + URR1A DNA MER1_type 1 226 0 9 1014 392 283 92 28 chr12 56310032 56310051 -64947479 - L1MB8 LINE L1 -1576 4570 4552 9 1014 686 236 58 58 chr12 56310453 56310660 -64946870 - B4 SINE B4 -2 290 84 9 1014 246 32 0 0 chr12 56310660 56310691 -64946839 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1014 1184 28 7 27 chr12 56310691 56310839 -64946691 - B1_Mus2 SINE Alu -2 145 1 9 1014 741 236 0 13 chr12 56310937 56311087 -64946443 + B1_Mur2 SINE Alu 2 149 0 9 1014 627 171 127 8 chr12 56311140 56311258 -64946272 + B1_Mur2 SINE Alu 5 136 -13 9 1014 270 0 0 0 chr12 56311259 56311289 -64946241 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1014 438 205 83 25 chr12 56311957 56312077 -64945453 + RSINE1 SINE B4 3 129 -36 9 1014 270 190 85 57 chr12 56312901 56313007 -64944523 + PB1D7 SINE Alu 4 112 -8 9 1014 1194 54 0 13 chr12 56313796 56313945 -64943585 + B1_Mus2 SINE Alu 1 147 0 9 1014 180 298 0 95 chr12 56314243 56314306 -64943224 + L2c LINE L2 3257 3313 -74 9 1014 462 88 0 0 chr12 56314563 56314631 -64942899 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1014 276 286 0 28 chr12 56314632 56314704 -64942826 - ID4_ SINE ID -11 72 3 9 1014 21 0 0 0 chr12 56315113 56315134 -64942396 + AT_rich Low_complexity Low_complexity 1 21 0 9 1014 298 259 267 0 chr12 56315343 56315459 -64942071 + B1_Mur1 SINE Alu 1 147 -2 9 1014 459 259 0 17 chr12 56316899 56317017 -64940513 + PB1D10 SINE Alu 1 116 -1 9 1014 398 286 107 0 chr12 56317228 56317368 -64940162 + RSINE1 SINE B4 3 157 -8 9 1014 345 310 25 105 chr12 56317389 56317551 -64939979 + B4 SINE B4 70 218 -74 9 1014 741 174 0 53 chr12 56317407 56317559 -64939971 + B1_Mur1 SINE Alu 6 149 0 9 1014 1546 53 11 0 chr12 56317955 56318145 -64939385 + B2_Mm1t SINE B2 2 193 0 9 1014 232 196 35 35 chr12 56318682 56318740 -64938790 - ID4 SINE ID -11 72 15 9 1014 677 43 0 0 chr12 56318968 56319060 -64938470 - B1_Mus2 SINE Alu -55 92 1 9 1014 925 203 52 5 chr12 56319841 56320034 -64937496 - B3 SINE B2 -14 202 1 9 1014 233 302 91 23 chr12 56320130 56320218 -64937312 + ID_B1 SINE B4 88 181 -43 9 1014 1036 219 5 18 chr12 56320520 56320739 -64936791 + B3 SINE B2 1 216 0 9 1014 1125 126 46 6 chr12 56320752 56320927 -64936603 - B2_Mm2 SINE B2 -11 184 3 9 1014 462 270 131 15 chr12 56321803 56322002 -64935528 + MER2 DNA MER2_type 11 232 -113 9 1014 312 230 80 0 chr12 56322049 56322149 -64935381 + PB1D10 SINE Alu 3 110 -7 9 1014 592 269 80 10 chr12 56322186 56322385 -64935145 + B4 SINE B4 6 218 -74 9 1014 545 237 44 0 chr12 56322571 56322706 -64934824 - B1F SINE Alu -7 142 2 9 1014 354 221 84 28 chr12 56322831 56322938 -64934592 + ID_B1 SINE B4 6 118 -106 9 1014 595 199 52 0 chr12 56323245 56323381 -64934149 - URR1B DNA MER1_type -3 222 80 9 1014 227 337 36 0 chr12 56323427 56323510 -64934020 - PB1D10 SINE Alu -30 87 2 9 1014 329 306 30 10 chr12 56323546 56323645 -64933885 - PB1D10 SINE Alu -6 111 11 9 1014 1354 94 16 5 chr12 56323779 56323791 -64933739 - B2_Mm2 SINE B2 0 195 184 9 1014 207 0 0 0 chr12 56323791 56323814 -64933716 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 9 1014 1354 94 16 5 chr12 56323814 56323994 -64933536 - B2_Mm2 SINE B2 -12 183 1 9 1014 420 228 144 38 chr12 56324021 56324153 -64933377 + B1_Mur1 SINE Alu 2 147 -2 9 1014 273 216 121 20 chr12 56324351 56324450 -64933080 + PB1D7 SINE Alu 2 110 -10 9 1014 900 115 65 0 chr12 56324675 56324814 -64932716 - B1_Mur4 SINE Alu -1 149 2 9 1014 345 281 69 15 chr12 56324929 56325059 -64932471 + ID_B1 SINE B4 81 217 -7 9 1014 255 130 0 0 chr12 56326042 56326096 -64931434 + (A)n Simple_repeat Simple_repeat 1 54 0 9 1014 1284 98 38 0 chr12 56326102 56326285 -64931245 + B2_Mm2 SINE B2 5 194 -1 9 1014 1063 92 80 25 chr12 56326492 56326692 -64930838 + ORR1B2 LTR MaLR 136 346 -21 9 1014 388 294 10 9 chr12 56327086 56327209 -64930321 + MTE2a LTR MaLR 256 419 0 9 1014 399 223 0 97 chr12 56327236 56327350 -64930180 + PB1D7 SINE Alu 18 120 0 9 1014 260 102 71 14 chr12 56327656 56327726 -64929804 + CT-rich Low_complexity Low_complexity 3 76 0 9 1014 303 280 57 41 chr12 56328368 56328491 -64929039 + RSINE1 SINE B4 25 149 -16 9 1014 999 24 0 0 chr12 56329277 56329403 -64928127 - B1_Mm SINE Alu 0 147 22 9 1014 1219 104 0 23 chr12 56329467 56329644 -64927886 + B2_Mm2 SINE B2 4 176 -19 9 1014 429 205 391 0 chr12 56329880 56330041 -64927489 + ID_B1 SINE B4 1 224 0 9 1014 1674 27 0 0 chr12 56330297 56330484 -64927046 - B2_Mm1a SINE B2 -6 187 1 9 1014 47 0 0 0 chr12 56332598 56332645 -64924885 + AT_rich Low_complexity Low_complexity 1 47 0 9 1014 710 178 0 23 chr12 56332655 56332787 -64924743 - B3 SINE B2 -86 130 2 9 1014 302 303 26 35 chr12 56333323 56333436 -64924094 + PB1 SINE Alu 16 127 0 9 1014 2137 133 100 8 chr12 56333472 56333852 -64923678 - RMER6A LTR ERVK 0 756 342 9 1014 279 0 0 0 chr12 56333929 56333960 -64923570 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1014 389 272 0 21 chr12 56333966 56334060 -64923470 - PB1 SINE Alu 0 127 36 9 1014 747 163 82 0 chr12 56334532 56334667 -64922863 - B1_Mus1 SINE Alu 0 148 3 9 1014 230 257 51 51 chr12 56334667 56334720 -64922810 - ORR1B1-int LTR MaLR -853 656 604 9 1014 203 121 69 0 chr12 56334726 56334784 -64922746 + CT-rich Low_complexity Low_complexity 3 64 0 9 1014 234 286 198 0 chr12 56334808 56334899 -64922631 - B1_Mur1 SINE Alu -36 113 5 9 1014 302 274 48 0 chr12 56334948 56335032 -64922498 - B4A SINE B4 -3 289 202 9 1014 911 181 178 3 chr12 56335069 56335362 -64922168 - Lx9 LINE L1 -2 7642 7299 9 1014 1652 206 121 34 chr12 56335354 56335802 -64921728 - Lx9 LINE L1 -846 6798 6312 9 1014 1297 105 26 10 chr12 56336063 56336255 -64921275 - B2_Mm2 SINE B2 0 195 1 9 1014 270 170 0 19 chr12 56336256 56336310 -64921220 - Lx9 LINE L1 -1668 5976 5924 9 1014 785 220 119 10 chr12 56336359 56336552 -64920978 - B4A SINE B4 -74 218 5 9 1014 1580 41 0 15 chr12 56336623 56336819 -64920711 + B2_Mm1t SINE B2 1 193 0 9 1014 928 90 45 0 chr12 56337052 56337186 -64920344 - B1_Mus1 SINE Alu -7 141 2 9 1014 604 148 5 286 chr12 56337203 56337402 -64920128 - B1_Mm SINE Alu 0 147 5 9 1014 992 226 14 9 chr12 56337425 56337635 -64919895 - B3 SINE B2 -4 212 2 9 1014 28 51 0 17 chr12 56337968 56337996 -64919534 + AT_rich Low_complexity Low_complexity 1 28 0 9 1014 515 239 0 57 chr12 56337996 56338120 -64919410 - PB1D9 SINE Alu -3 117 1 9 1014 28 51 0 17 chr12 56338120 56338151 -64919379 + AT_rich Low_complexity Low_complexity 1 31 0 9 1014 650 213 30 30 chr12 56338153 56338284 -64919246 - B1F2 SINE Alu -13 136 6 9 1014 240 250 41 141 chr12 56338180 56338301 -64919229 - MT2B LTR ERVL -338 263 155 9 1014 918 234 31 0 chr12 56338507 56338699 -64918831 - B3 SINE B2 -4 212 15 9 1014 392 136 11 0 chr12 56339030 56339118 -64918412 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 9 1014 625 159 142 8 chr12 56339555 56339682 -64917848 - B1_Mur1 SINE Alu -4 145 2 9 1014 597 250 68 42 chr12 56340549 56340735 -64916795 - B3A SINE B2 -6 189 14 9 1014 404 250 129 18 chr12 56341491 56341607 -64915923 + B1F SINE Alu 7 127 -21 9 1014 411 343 44 7 chr12 56342547 56342682 -64914848 + RSINE1 SINE B4 26 165 0 9 1014 969 208 48 24 chr12 56342766 56342973 -64914557 + B3 SINE B2 1 212 -4 9 1014 527 282 40 20 chr12 56343012 56343164 -64914366 - B3A SINE B2 -2 196 42 9 1014 283 253 135 10 chr12 56343193 56343289 -64914241 - L2b LINE L2 -15 3360 3253 9 1014 227 302 175 0 chr12 56343361 56343424 -64914106 - ID4 SINE ID -6 77 4 9 1014 2189 128 118 2 chr12 56343593 56343992 -64913538 - BGLII_A LTR ERVK 0 445 1 9 1014 349 182 37 61 chr12 56344078 56344160 -64913370 + PB1D9 SINE Alu 41 120 0 9 1014 1104 286 92 121 chr12 56344159 56344386 -64913144 + Charlie1a DNA MER1_type 187 406 -1049 9 1014 1171 47 0 39 chr12 56344386 56344540 -64912990 - B1_Mus1 SINE Alu 0 148 1 9 1014 1104 286 92 121 chr12 56344540 56345107 -64912423 + Charlie1a DNA MER1_type 407 958 -497 9 1014 363 295 123 18 chr12 56345502 56345602 -64911928 - MER58A DNA MER1_type -57 167 56 9 1014 390 236 55 28 chr12 56345602 56345711 -64911819 + B1F SINE Alu 3 114 -35 9 1014 361 314 63 16 chr12 56345829 56345955 -64911575 + ID_B1 SINE B4 91 222 -2 9 1014 242 267 33 0 chr12 56346168 56346228 -64911302 + MER33 DNA MER1_type 10 71 -253 9 1014 277 306 74 0 chr12 56346587 56346695 -64910835 - RSINE1 SINE B4 -8 157 42 9 1014 21 57 0 0 chr12 56347055 56347090 -64910440 + AT_rich Low_complexity Low_complexity 1 35 0 9 1014 247 271 44 126 chr12 56347198 56347333 -64910197 + PB1 SINE Alu 3 126 -1 1 1014 250 217 33 16 chr12 56347422 56347483 -64910047 + B1F SINE Alu 67 128 -21 1 1014 1158 50 0 0 chr12 56347658 56347797 -64909733 - B1_Mus1 SINE Alu -9 139 1 1 1014 207 0 0 0 chr12 56347819 56347842 -64909688 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 1 1014 350 280 27 27 chr12 56348468 56348578 -64908952 - B1_Mm SINE Alu -31 116 7 1 1014 261 207 155 0 chr12 56348709 56348767 -64908763 + RSINE1 SINE B4 78 144 -21 1 1014 920 195 95 0 chr12 56348962 56349152 -64908378 - MTC LTR MaLR 0 421 214 1 1014 396 204 61 0 chr12 56349134 56349232 -64908298 - MTC LTR MaLR -317 104 1 1 1014 323 280 13 0 chr12 56349296 56349371 -64908159 + ID4_ SINE ID 1 76 -7 1 1014 1206 58 0 0 chr12 56349439 56349594 -64907936 + B2_Mm2 SINE B2 1 155 -40 1 1014 181 0 69 0 chr12 56349594 56349623 -64907907 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1014 556 270 16 8 chr12 56349649 56349776 -64907754 + RSINE1 SINE B4 2 129 -36 1 1014 438 294 16 32 chr12 56350049 56350172 -64907358 + B1F1 SINE Alu 23 143 -6 1 1014 933 219 24 28 chr12 56350241 56350452 -64907078 - B3 SINE B2 -6 210 1 1 1014 1605 26 0 20 chr12 56351318 56351514 -64906016 + B2_Mm1a SINE B2 2 193 0 1 1014 368 227 171 60 chr12 56351649 56351766 -64905764 + B1_Mur1 SINE Alu 1 130 -19 1 1014 1717 126 134 71 chr12 56351772 56352123 -64905407 - ORR1C1 LTR MaLR 0 378 6 1 1014 431 198 0 42 chr12 56352280 56352375 -64905155 - B1_Mur4 SINE Alu -5 145 55 1 1014 212 237 0 0 chr12 56352859 56352897 -64904633 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 1 1014 237 212 242 0 chr12 56353340 56353406 -64904124 - ID4 SINE ID 0 83 2 1 1014 400 196 71 9 chr12 56353880 56353993 -64903537 - BC1_Mm scRNA scRNA -30 122 3 1 1014 285 206 31 16 chr12 56353998 56354062 -64903468 - PB1D10 SINE Alu -7 110 46 1 1014 752 169 12 75 chr12 56354118 56354278 -64903252 + B1_Mur4 SINE Alu 1 150 0 1 1014 944 199 34 3 chr12 56354226 56354436 -64903094 - ORR1D1 LTR MaLR -152 218 1 1 1014 294 218 0 0 chr12 56354447 56354502 -64903028 - B1F1 SINE Alu -94 55 1 1 1014 263 265 232 14 chr12 56354896 56354912 -64902618 - B4 SINE B4 -44 248 85 1 1014 397 162 68 110 chr12 56354912 56355030 -64902500 - B1_Mur2 SINE Alu 0 117 5 1 1014 441 236 99 81 chr12 56355328 56355489 -64902041 - RSINE1 SINE B4 0 165 2 1 1014 214 293 17 33 chr12 56355509 56355569 -64901961 - B3A SINE B2 -120 78 20 1 1014 207 225 0 0 chr12 56355613 56355653 -64901877 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 1014 608 277 24 36 chr12 56355654 56355819 -64901711 - RSINE1 SINE B4 0 165 3 1 1014 372 264 55 0 chr12 56355830 56355940 -64901590 - PB1D7 SINE Alu 0 120 5 1 1014 385 249 14 30 chr12 56355987 56356109 -64901421 - B1_Mur2 SINE Alu -5 144 2 1 1014 429 230 37 144 chr12 56357313 56357501 -64900029 + B2_Mm2 SINE B2 2 169 -26 1 1014 1182 62 0 0 chr12 56357533 56357679 -64899851 + B1_Mus1 SINE Alu 1 146 -2 1 1014 267 237 17 0 chr12 56357698 56357757 -64899773 - B3 SINE B2 -155 61 2 1 1014 279 171 179 16 chr12 56357762 56357837 -64899693 - B1_Mur3 SINE Alu -2 147 60 1 1014 296 257 97 28 chr12 56357832 56357976 -64899554 + B4A SINE B4 132 285 -7 1 1014 723 276 66 0 chr12 56357992 56358188 -64899342 + ID_B1 SINE B4 15 223 -1 1 1014 249 235 161 0 chr12 56358686 56358767 -64898763 + BC1_Mm scRNA scRNA 1 94 -58 1 1014 366 309 73 7 chr12 56359021 56359158 -64898372 + B1F1 SINE Alu 1 146 -3 1 1014 486 190 119 40 chr12 56359338 56359464 -64898066 - B1_Mur4 SINE Alu -1 149 14 1 1014 376 273 87 40 chr12 56359342 56359491 -64898039 - B4 SINE B4 -69 223 68 1 1014 348 323 48 123 chr12 56359732 56359840 -64897690 + ID_B1 SINE B4 3 175 -49 1 1014 363 244 76 13 chr12 56359840 56359919 -64897611 + PB1D9 SINE Alu 14 97 -23 1 1014 2939 68 0 0 chr12 56359972 56360355 -64897175 - L1Md_F2 LINE L1 0 6582 6200 1 1014 231 36 0 0 chr12 56360770 56360798 -64896732 + (CCCCCT)n Simple_repeat Simple_repeat 5 32 0 1 126 1054 139 46 6 chr12 56360889 56361062 -64896468 + B2_Mm2 SINE B2 2 181 -14 1 1015 180 0 0 0 chr12 56361062 56361082 -64896448 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 1015 444 220 99 10 chr12 56361128 56361229 -64896301 + B1_Mur1 SINE Alu 9 118 -31 1 1015 213 352 204 25 chr12 56361750 56361951 -64895579 - B4 SINE B4 -51 241 5 1 1015 891 258 23 78 chr12 56362027 56362334 -64895196 - B4A SINE B4 -1 291 2 1 1015 34 0 0 0 chr12 56362343 56362377 -64895153 + AT_rich Low_complexity Low_complexity 1 34 0 1 1015 444 215 144 32 chr12 56362385 56362510 -64895020 - B1F2 SINE Alu -9 140 2 1 1015 504 275 133 71 chr12 56362553 56362749 -64894781 - ID_B1 SINE B4 -9 215 8 1 1015 226 327 0 0 chr12 56364089 56364141 -64893389 - RSINE1 SINE B4 -4 161 110 1 1015 631 242 30 64 chr12 56364119 56364163 -64893367 - RSINE1 SINE B4 -16 276 211 1 1015 863 103 16 8 chr12 56364163 56364290 -64893240 - B1_Mur2 SINE Alu -1 148 21 1 1015 631 242 30 64 chr12 56364290 56364425 -64893105 - RSINE1 SINE B4 -16 210 3 1 1015 425 66 0 16 chr12 56364439 56364501 -64893029 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 1 1015 363 273 146 66 chr12 56364554 56364766 -64892764 - B4 SINE B4 -18 274 46 1 1015 338 246 0 0 chr12 56364751 56364816 -64892714 - B1F SINE Alu -62 87 23 1 1015 395 252 57 28 chr12 56364862 56364968 -64892562 + PB1D10 SINE Alu 1 109 -8 1 1015 963 211 197 68 chr12 56365391 56365843 -64891687 - MT2B LTR ERVL -1 474 1 1 1015 1209 55 0 0 chr12 56365987 56366132 -64891398 - B1_Mus2 SINE Alu -2 145 1 1 1015 2780 179 129 48 chr12 56366314 56366860 -64890670 - Lx9 LINE L1 -2 7642 7062 1 1015 1243 34 0 0 chr12 56366860 56367007 -64890523 + B1_Mm SINE Alu 1 147 0 1 1015 2780 179 129 48 chr12 56367007 56367286 -64890244 - Lx9 LINE L1 -583 7061 6750 1 1015 938 209 38 14 chr12 56367317 56367526 -64890004 - ORR1D1 LTR MaLR -155 219 6 1 1015 2239 74 29 3 chr12 56367800 56368111 -64889419 - ORR1A2 LTR MaLR -8 319 1 1 1015 215 189 13 51 chr12 56368355 56368433 -64889097 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 1 1015 499 192 163 24 chr12 56368433 56368556 -64888974 - B1_Mus2 SINE Alu -6 141 2 1 1015 180 0 0 0 chr12 56368694 56368714 -64888816 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1015 1238 41 0 0 chr12 56368790 56368937 -64888593 + B1_Mm SINE Alu 1 147 0 1 1015 675 256 40 15 chr12 56369222 56369424 -64888106 + B3 SINE B2 2 208 -8 1 1015 537 151 108 0 chr12 56369455 56369548 -64887982 - B1_Mus2 SINE Alu 0 147 45 1 1015 676 199 149 41 chr12 56369652 56369846 -64887684 - B3 SINE B2 0 216 2 1 1015 566 267 80 12 chr12 56369888 56370051 -64887479 - B3A SINE B2 -23 175 2 1 1015 435 252 76 0 chr12 56370173 56370304 -64887226 + B1_Mur2 SINE Alu 2 142 -7 1 1015 1117 68 0 0 chr12 56370578 56370724 -64886806 + B1_Mm SINE Alu 2 147 0 1 1015 22 56 0 0 chr12 56370766 56370802 -64886728 + AT_rich Low_complexity Low_complexity 1 36 0 1 1015 405 302 8 17 chr12 56370835 56370953 -64886577 - PB1 SINE Alu -8 119 3 1 1015 217 237 186 0 chr12 56370989 56371086 -64886444 + MIR SINE MIR 114 228 -34 1 1015 245 186 107 67 chr12 56371198 56371273 -64886257 - ID4 SINE ID -5 78 1 1 1015 189 74 0 0 chr12 56371386 56371413 -64886117 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1015 701 221 42 39 chr12 56371746 56372010 -64885520 + B3 SINE B2 3 203 -13 1 1015 1486 54 0 16 chr12 56372066 56372254 -64885276 + B2_Mm1a SINE B2 2 186 -7 1 1015 1129 48 7 40 chr12 56372919 56373071 -64884459 + B1_Mm SINE Alu 1 147 0 1 1015 2741 177 154 82 chr12 56373232 56373972 -64883558 + RMER21A LTR ERV1 18 810 -137 1 1015 806 185 88 22 chr12 56373976 56374158 -64883372 - ORR1C2 LTR MaLR -35 349 156 1 1015 248 135 0 0 chr12 56374143 56374180 -64883350 - ORR1C2 LTR MaLR -354 40 4 1 1015 344 276 70 0 chr12 56374407 56374529 -64883001 - L1M4 LINE L1 -1444 4702 4563 1 1015 1046 120 177 0 chr12 56374529 56374721 -64882809 + URR1A DNA MER1_type 1 226 0 1 1015 741 230 59 59 chr12 56375098 56375301 -64882229 - B4 SINE B4 -2 290 88 1 1015 285 51 0 0 chr12 56375305 56375344 -64882186 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1015 1131 42 7 27 chr12 56375344 56375492 -64882038 - B1_Mus2 SINE Alu -2 145 1 1 1015 812 230 0 13 chr12 56375587 56375737 -64881793 + B1_Mur2 SINE Alu 2 149 0 1 1015 601 179 127 8 chr12 56375790 56375908 -64881622 + B1_Mur2 SINE Alu 5 136 -13 1 1015 270 0 0 0 chr12 56375909 56375939 -64881591 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1015 475 228 76 30 chr12 56376606 56376737 -64880793 + RSINE1 SINE B4 3 139 -26 1 1015 185 317 117 0 chr12 56377263 56377323 -64880207 + MIRb SINE MIR 9 75 -193 1 1015 247 267 129 0 chr12 56377384 56377485 -64880045 - MTE2b LTR MaLR -14 365 252 1 1015 266 196 83 56 chr12 56377563 56377671 -64879859 + PB1D7 SINE Alu 2 112 -8 1 1015 1130 50 0 14 chr12 56378460 56378603 -64878927 + B1_Mus2 SINE Alu 1 141 -6 1 1015 200 322 11 66 chr12 56378871 56378973 -64878557 + L2c LINE L2 3191 3313 -74 1 1015 555 66 0 0 chr12 56379228 56379304 -64878226 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1015 279 286 0 28 chr12 56379305 56379377 -64878153 - ID4_ SINE ID -11 72 3 1 1015 210 324 60 43 chr12 56380016 56380132 -64877398 + PB1D9 SINE Alu 1 118 -2 1 1015 476 250 0 0 chr12 56381572 56381672 -64875858 + PB1D10 SINE Alu 1 100 -17 1 1015 375 266 114 7 chr12 56381900 56382040 -64875490 + RSINE1 SINE B4 3 157 -8 1 1015 381 311 44 104 chr12 56382061 56382079 -64875451 + B4 SINE B4 70 161 -131 1 1015 786 174 0 53 chr12 56382079 56382231 -64875299 + B1_Mur1 SINE Alu 6 149 0 1 1015 381 311 44 104 chr12 56382231 56382244 -64875286 + B4 SINE B4 162 241 -51 1 1015 220 298 148 31 chr12 56382964 56383092 -64874438 - MIRc SINE MIR -111 157 15 1 1015 198 0 0 0 chr12 56383129 56383151 -64874379 + (C)n Simple_repeat Simple_repeat 1 22 0 1 1015 254 145 52 52 chr12 56383153 56383211 -64874319 - ID4 SINE ID -11 72 15 1 1015 684 87 0 0 chr12 56383445 56383537 -64873993 - B1_Mus2 SINE Alu -55 92 1 1 1015 905 203 52 5 chr12 56384317 56384510 -64873020 - B3 SINE B2 -14 202 1 1 1015 271 313 78 29 chr12 56384606 56384708 -64872822 + ID_B1 SINE B4 88 194 -30 1 1015 1047 211 5 19 chr12 56384996 56385204 -64872326 + B3 SINE B2 1 205 -11 1 1015 1166 123 17 6 chr12 56385228 56385408 -64872122 - B2_Mm2 SINE B2 -11 184 3 1 1015 519 271 138 5 chr12 56386284 56386473 -64871057 + MER2 DNA MER2_type 11 224 -121 1 1015 315 230 80 0 chr12 56386530 56386630 -64870900 + PB1D10 SINE Alu 3 110 -7 1 1015 566 250 90 11 chr12 56386667 56386845 -64870685 + B4 SINE B4 6 197 -95 1 1015 768 200 0 0 chr12 56386993 56387143 -64870387 - URR1B DNA MER1_type -3 222 73 1 1015 267 287 25 100 chr12 56387145 56387265 -64870265 - ID_B1 SINE B4 -30 194 84 1 1015 276 325 36 0 chr12 56387183 56387266 -64870264 - PB1D10 SINE Alu -30 87 2 1 1015 358 296 30 10 chr12 56387301 56387400 -64870130 - PB1D10 SINE Alu -6 111 11 1 1015 256 192 269 0 chr12 56387458 56387536 -64869994 + B1_Mm SINE Alu 1 99 -48 1 1015 207 0 0 0 chr12 56387546 56387569 -64869961 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 1 1015 1307 89 16 5 chr12 56387569 56387749 -64869781 - B2_Mm2 SINE B2 -12 183 1 1 1015 460 226 135 38 chr12 56387776 56387909 -64869621 + B1_Mur1 SINE Alu 2 147 -2 1 1015 270 196 121 20 chr12 56388107 56388206 -64869324 + PB1D7 SINE Alu 2 110 -10 1 1015 900 115 65 0 chr12 56388429 56388568 -64868962 - B1_Mur4 SINE Alu -1 149 2 1 1015 345 281 69 15 chr12 56388683 56388813 -64868717 + ID_B1 SINE B4 81 217 -7 1 1015 183 42 0 0 chr12 56389789 56389813 -64867717 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1015 1285 93 38 0 chr12 56389819 56390002 -64867528 + B2_Mm2 SINE B2 5 194 -1 1 1015 1145 91 64 25 chr12 56390209 56390412 -64867118 + ORR1B2 LTR MaLR 136 346 -21 1 1015 411 275 10 9 chr12 56390805 56390928 -64866602 + MTE2a LTR MaLR 256 419 0 1 1015 394 233 0 97 chr12 56390955 56391069 -64866461 + PB1D7 SINE Alu 18 120 0 1 1015 257 92 76 15 chr12 56391366 56391432 -64866098 + CT-rich Low_complexity Low_complexity 3 72 0 1 1015 289 265 65 49 chr12 56392075 56392198 -64865332 + RSINE1 SINE B4 25 149 -16 1 1015 438 322 37 33 chr12 56392235 56392505 -64865025 + B4A SINE B4 3 273 -19 1 1015 490 307 21 0 chr12 56392571 56392711 -64864819 - B1F2 SINE Alu 0 149 7 1 1015 1032 119 89 22 chr12 56392735 56392915 -64864615 - B2_Mm2 SINE B2 -2 193 2 1 1015 716 99 0 0 chr12 56392983 56393084 -64864446 + B1_Mus2 SINE Alu 47 147 0 1 1015 204 67 0 0 chr12 56393084 56393114 -64864416 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1015 443 314 8 0 chr12 56393120 56393241 -64864289 - B1F SINE Alu -27 122 1 1 1015 213 39 0 0 chr12 56394142 56394168 -64863362 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 1 1015 537 76 20 71 chr12 56394940 56395039 -64862491 + L1Md_F2 LINE L1 6488 6581 -1 1 1015 2431 134 9 65 chr12 56395503 56395703 -64861827 + MTB_Mm LTR MaLR 1 195 -212 1 1015 867 132 64 35 chr12 56395703 56395875 -64861655 + B2_Mm2 SINE B2 1 177 -18 1 1015 1182 112 0 0 chr12 56395877 56396055 -64861475 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 1015 2431 134 9 65 chr12 56396055 56396282 -64861248 + MTB_Mm LTR MaLR 196 407 0 1 1015 635 144 16 56 chr12 56396482 56396607 -64860923 - PB1D9 SINE Alu 0 120 1 1 1015 543 226 53 0 chr12 56396673 56396806 -64860724 + B1F SINE Alu 1 140 -9 1 1015 467 241 8 51 chr12 56397743 56397861 -64859669 - PB1D10 SINE Alu 0 117 5 1 1015 289 232 0 14 chr12 56397917 56397987 -64859543 - B1_Mur1 SINE Alu -8 141 73 1 1015 311 250 217 0 chr12 56398016 56398108 -64859422 - PB1D10 SINE Alu -5 112 1 1 1015 637 288 39 39 chr12 56398173 56398404 -64859126 - B4A SINE B4 -4 288 58 1 1015 1426 70 11 11 chr12 56398527 56398715 -64858815 + B2_Mm2 SINE B2 1 188 -7 1 1015 263 191 0 0 chr12 56400311 56400353 -64857177 + ID4_ SINE ID 16 57 -26 1 1015 239 294 0 0 chr12 56400712 56400780 -64856750 - ID4 SINE ID -11 72 5 1 1015 227 283 0 0 chr12 56400833 56400886 -64856644 - PB1D7 SINE Alu -62 58 6 1 1015 193 279 29 14 chr12 56401194 56401263 -64856267 - L2 LINE L2 -1361 2058 1989 1 1015 420 234 88 8 chr12 56401379 56401504 -64856026 - B1F2 SINE Alu -1 148 14 1 1015 696 186 20 46 chr12 56401784 56401936 -64855594 + B3A SINE B2 1 148 -50 1 1015 477 292 108 63 chr12 56401936 56402316 -64855214 + RMER10A LTR ERVL 1 397 -45 1 1015 216 376 42 71 chr12 56402390 56402548 -64854982 - L2 LINE L2 -1637 1782 1630 1 1015 865 136 15 0 chr12 56402548 56402680 -64854850 - B1_Mus1 SINE Alu -12 136 3 1 1015 216 376 42 71 chr12 56402680 56402899 -64854631 - L2 LINE L2 -1790 1629 1417 1 1015 213 310 160 0 chr12 56403019 56403119 -64854411 - L2 LINE L2 -2124 1295 1180 1 1015 217 290 14 28 chr12 56403184 56403255 -64854275 + PB1D10 SINE Alu 36 105 -12 1 1015 204 37 0 0 chr12 56406228 56406240 -64851290 + (TTTG)n Simple_repeat Simple_repeat 1 12 0 1 1015 1232 54 0 0 chr12 56406240 56406387 -64851143 - B1_Mm SINE Alu 0 147 1 1 1015 204 37 0 0 chr12 56406387 56406401 -64851129 + (TTTG)n Simple_repeat Simple_repeat 3 16 0 1 1015 608 300 67 22 chr12 56406405 56406630 -64850900 - B4A SINE B4 -49 243 9 1 1015 651 26 0 0 chr12 56406827 56406904 -64850626 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1015 391 208 14 138 chr12 56406916 56406932 -64850598 - MT2B LTR ERVL -322 279 218 1 1015 683 165 9 0 chr12 56406932 56407047 -64850483 - B1_Mus1 SINE Alu -32 116 1 1 1015 391 208 14 138 chr12 56407047 56407061 -64850469 - MT2B LTR ERVL -322 217 153 1 1015 664 235 33 16 chr12 56407451 56407633 -64849897 + B3A SINE B2 3 187 -11 1 1015 207 173 0 0 chr12 56407664 56407716 -64849814 + (TGG)n Simple_repeat Simple_repeat 2 53 0 1 1015 344 198 243 0 chr12 56407718 56407829 -64849701 + B1_Mur4 SINE Alu 6 143 -7 1 1015 297 250 143 0 chr12 56407992 56408076 -64849454 - PB1D7 SINE Alu -2 118 23 1 1015 410 226 0 11 chr12 56408631 56408725 -64848805 - RSINE1 SINE B4 -35 130 38 1 1015 2126 191 98 27 chr12 56408740 56408821 -64848709 - RLTR20B1 LTR ERVK -15 548 470 1 1015 222 37 0 0 chr12 56408821 56408848 -64848682 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1015 2126 191 98 27 chr12 56408848 56409278 -64848252 - RLTR20B1 LTR ERVK -94 469 3 1 1015 450 169 0 0 chr12 56409348 56409437 -64848093 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1015 426 39 0 0 chr12 56409579 56409631 -64847899 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1015 349 247 0 0 chr12 56410047 56410124 -64847406 + B4A SINE B4 2 78 -214 1 1015 376 240 10 10 chr12 56410120 56410217 -64847313 + B4A SINE B4 188 284 -8 1 1015 188 34 0 33 chr12 56410221 56410251 -64847279 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1015 207 0 0 0 chr12 56410465 56410488 -64847042 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1 1015 1018 48 103 0 chr12 56410488 56410634 -64846896 - B2_Mm2 SINE B2 -34 161 1 1 1015 385 244 15 66 chr12 56410638 56410774 -64846756 - RMER13A LTR ERVK -12 848 720 1 1015 2358 157 118 30 chr12 56410741 56411267 -64846263 - RMER13A LTR ERVK -287 573 2 1 1015 602 89 27 0 chr12 56411314 56411412 -64846118 - B1_Mur4 SINE Alu -15 135 31 1 1015 364 165 153 0 chr12 56411664 56411749 -64845781 - L1MC4 LINE L1 -1013 7029 6932 1 1015 420 206 31 10 chr12 56412173 56412271 -64845259 - RMER5 LTR ERV1 0 534 435 1 1015 1999 203 161 91 chr12 56412281 56413204 -64844326 - RMER17B LTR ERVK -9 899 1 1 1015 1218 239 79 18 chr12 56413204 56413580 -64843950 - RMER5 LTR ERV1 -91 443 45 1 1015 1587 36 5 10 chr12 56414119 56414313 -64843217 + B2_Mm1t SINE B2 1 193 0 1 1015 1058 113 6 29 chr12 56414556 56414729 -64842801 + B2_Mm2 SINE B2 3 171 -24 1 1015 394 250 21 0 chr12 56414742 56414838 -64842692 - Kanga2_a DNA Tc2 -672 216 119 1 1015 394 182 41 31 chr12 56414985 56415118 -64842412 - B3A SINE B2 0 216 88 1 1015 364 292 50 8 chr12 56415239 56415360 -64842170 + RSINE1 SINE B4 23 148 -17 1 1015 351 0 0 0 chr12 56415380 56415419 -64842111 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1015 280 241 80 11 chr12 56415486 56415574 -64841956 - MLT1C LTR MaLR -44 423 330 1 1015 660 221 16 8 chr12 56415955 56416083 -64841447 - B1_Mur2 SINE Alu -16 133 5 1 1015 705 157 14 36 chr12 56416128 56416267 -64841263 - B1_Mur4 SINE Alu -2 148 13 1 1015 339 314 19 0 chr12 56416291 56416396 -64841134 - B1F SINE Alu -31 118 12 1 1015 1196 41 7 0 chr12 56416578 56416723 -64840807 - B1_Mm SINE Alu 0 147 2 1 1015 304 318 77 8 chr12 56417074 56417204 -64840326 - ID_B1 SINE B4 -2 222 84 1 1015 344 216 89 0 chr12 56417100 56417205 -64840325 - PB1D10 SINE Alu -33 116 2 1 1015 611 254 55 91 chr12 56417277 56417445 -64840085 - B3 SINE B2 0 216 53 1 1015 2597 115 58 42 chr12 56417445 56417897 -64839633 - RMER6B LTR ERVK -2 459 1 1 1015 611 254 55 91 chr12 56417897 56417927 -64839603 - B3 SINE B2 -164 52 25 1 1015 245 213 21 0 chr12 56417944 56417991 -64839539 - B1_Mur1 SINE Alu -32 117 70 1 1015 438 81 394 0 chr12 56417985 56418084 -64839446 - B2_Mm2 SINE B2 -11 184 47 1 1015 1116 105 12 0 chr12 56418137 56418308 -64839222 - B2_Mm2 SINE B2 -21 174 2 1 1015 2754 67 11 0 chr12 56418442 56418800 -64838730 - L1_Mus1 LINE L1 -1 6566 6205 1 1015 1457 63 21 0 chr12 56418895 56419085 -64838445 - B2_Mm2 SINE B2 0 195 2 1 1015 193 57 57 0 chr12 56419382 56419417 -64838113 + (CCTG)n Simple_repeat Simple_repeat 1 37 0 1 1015 186 133 0 0 chr12 56419440 56419470 -64838060 + (TCC)n Simple_repeat Simple_repeat 2 31 0 1 1015 192 77 0 0 chr12 56419464 56419490 -64838040 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1015 1210 61 0 0 chr12 56419490 56419637 -64837893 - B1_Mus2 SINE Alu 0 147 1 1 1015 689 178 301 0 chr12 56419683 56419846 -64837684 - B3 SINE B2 -4 212 1 1 1015 523 218 94 24 chr12 56420223 56420350 -64837180 + ID_B1 SINE B4 78 213 -11 1 1015 219 250 0 0 chr12 56420359 56420403 -64837127 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 1 1015 219 214 0 0 chr12 56420579 56420621 -64836909 + (CCG)n Simple_repeat Simple_repeat 2 43 0 1 1015 576 246 38 8 chr12 56421109 56421240 -64836290 + B1F SINE Alu 9 143 -6 1 1015 23 0 0 0 chr12 56421393 56421416 -64836114 + AT_rich Low_complexity Low_complexity 1 23 0 1 1015 613 268 25 28 chr12 56421429 56421711 -64835819 + B4A SINE B4 48 281 -11 1 1015 350 42 0 20 chr12 56421840 56421889 -64835641 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1015 581 168 79 0 chr12 56422136 56422237 -64835293 + PB1D9 SINE Alu 2 110 -10 1 1015 237 108 0 0 chr12 56422295 56422332 -64835198 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1015 1253 34 0 0 chr12 56422334 56422481 -64835049 - B1_Mus1 SINE Alu 0 148 2 1 1015 262 257 52 60 chr12 56423505 56423621 -64833909 + PB1D10 SINE Alu 2 116 -1 1 1015 304 270 11 11 chr12 56423954 56424044 -64833486 - RMER1C Other Other -1 1341 1252 1 1015 396 290 167 0 chr12 56424048 56424186 -64833344 - Lx8 LINE L1 -147 7326 7166 1 1015 2443 288 107 20 chr12 56424219 56425217 -64832313 - Lx8 LINE L1 -375 7098 6014 1 1015 323 287 59 0 chr12 56425506 56425607 -64831923 - MIRb SINE MIR -113 155 49 1 1015 1162 54 0 39 chr12 56425647 56425800 -64831730 + B1_Mus2 SINE Alu 1 147 0 1 1015 24 0 0 0 chr12 56426163 56426187 -64831343 + AT_rich Low_complexity Low_complexity 1 24 0 1 1015 312 291 55 0 chr12 56426192 56426302 -64831228 - PB1D10 SINE Alu 0 117 2 1 1015 421 254 93 0 chr12 56426807 56426925 -64830605 + B1_Mur1 SINE Alu 1 129 -20 1 1015 485 120 0 12 chr12 56427109 56427193 -64830337 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1015 534 275 65 110 chr12 56427209 56427499 -64830031 - B4A SINE B4 -12 280 4 1 1015 4335 68 21 68 chr12 56427526 56428142 -64829388 + LTRIS_Mus LTR ERV1 1 587 0 1 1015 245 338 51 36 chr12 56428143 56428281 -64829249 - MIRb SINE MIR -90 178 39 1 1015 1548 48 16 0 chr12 56428286 56428474 -64829056 - B2_Mm2 SINE B2 -4 191 1 1 1015 884 319 33 11 chr12 56428574 56428850 -64828680 + B4A SINE B4 7 288 -4 1 1015 417 70 0 0 chr12 56428951 56429008 -64828522 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1015 202 205 0 25 chr12 56429140 56429180 -64828350 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1015 194 62 0 30 chr12 56429522 56429555 -64827975 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1015 1045 108 0 0 chr12 56429555 56429694 -64827836 - B1_Mus2 SINE Alu -8 139 1 1 1015 391 134 45 0 chr12 56429757 56429824 -64827706 - ID4 SINE ID -9 74 5 1 1015 250 255 152 10 chr12 56429829 56429928 -64827602 - PB1D10 SINE Alu -4 113 1 1 1015 653 267 116 11 chr12 56430046 56430275 -64827255 + B4 SINE B4 52 292 0 1 1015 1121 52 0 0 chr12 56431096 56431232 -64826298 + B1_Mus2 SINE Alu 1 136 -11 1 1015 340 0 59 20 chr12 56431232 56431283 -64826247 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 1 1015 683 165 0 0 chr12 56431296 56431411 -64826119 + B1_Mur4 SINE Alu 36 150 0 1 1015 610 190 83 0 chr12 56431599 56431720 -64825810 + B3 SINE B2 1 131 -85 1 1015 339 239 0 52 chr12 56431780 56431877 -64825653 - B1F SINE Alu -1 148 57 1 1015 419 258 137 32 chr12 56432314 56432438 -64825092 - ID_B1 SINE B4 -8 216 80 1 1015 458 175 214 0 chr12 56432456 56432559 -64824971 + B1_Mus1 SINE Alu 24 148 0 1 1015 883 121 13 0 chr12 56432559 56432708 -64824822 + (GGAGA)n Simple_repeat Simple_repeat 5 155 0 1 1015 716 112 0 41 chr12 56432729 56432850 -64824680 + B1_Mus1 SINE Alu 10 125 -23 1 1015 321 247 37 0 chr12 56432907 56432988 -64824542 - ID_B1 SINE B4 -64 160 77 1 1015 354 188 176 0 chr12 56432988 56433073 -64824457 - PB1D9 SINE Alu 0 120 21 1 1015 275 262 88 0 chr12 56433407 56433487 -64824043 + PB1D10 SINE Alu 10 96 -21 1 1015 918 282 141 51 chr12 56433652 56434260 -64823270 + L1MB7 LINE L1 5496 6166 -18 1 1015 1325 96 0 26 chr12 56434260 56434452 -64823078 - B2_Mm2 SINE B2 -8 187 1 1 1015 918 282 141 51 chr12 56434452 56434475 -64823055 + L1MB7 LINE L1 6167 6184 0 1 1015 242 202 127 95 chr12 56434610 56434630 -64822900 - B1F SINE Alu 0 149 135 1 1015 225 0 0 0 chr12 56434630 56434655 -64822875 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1015 393 194 97 0 chr12 56434656 56434749 -64822781 - ID_B1 SINE B4 -15 209 108 1 1015 242 202 127 95 chr12 56434749 56434760 -64822770 - B1F SINE Alu -15 133 20 1 1015 283 188 0 86 chr12 56434967 56435037 -64822493 + B1_Mur2 SINE Alu 74 137 -12 1 1015 2993 63 21 48 chr12 56435080 56435310 -64822220 - BGLII LTR ERVK 0 421 198 1 1015 773 71 155 16 chr12 56435310 56435439 -64822091 - B1_Mus1 SINE Alu 0 148 2 1 1015 2993 63 21 48 chr12 56435439 56435641 -64821889 - BGLII LTR ERVK -224 197 1 1 1015 1329 229 60 26 chr12 56435641 56436023 -64821507 - RMER3D-int LTR ERVK 0 2842 2448 1 1015 268 269 223 11 chr12 56436501 56436595 -64820935 - B1F SINE Alu 0 149 36 1 1015 21 36 0 0 chr12 56436743 56436771 -64820759 + AT_rich Low_complexity Low_complexity 1 28 0 1 1015 444 260 68 57 chr12 56436916 56436936 -64820594 - B2_Mm2 SINE B2 0 195 179 1 1015 852 177 7 7 chr12 56436936 56437084 -64820446 - B1_Mur4 SINE Alu -2 148 1 1 1015 572 200 92 24 chr12 56437084 56437255 -64820275 - B3 SINE B2 -17 178 2 1 1015 821 233 58 15 chr12 56437267 56437472 -64820058 - B3 SINE B2 0 216 3 1 1015 800 150 274 24 chr12 56437596 56437760 -64819770 + B3 SINE B2 3 207 -9 1 1015 219 167 0 0 chr12 56437793 56437835 -64819695 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1015 627 136 33 33 chr12 56438257 56438379 -64819151 - B1_Mur4 SINE Alu -7 143 22 1 1015 364 227 13 0 chr12 56438384 56438459 -64819071 + B1F SINE Alu 74 149 0 1 1015 512 257 29 7 chr12 56438478 56438615 -64818915 - B1_Mur1 SINE Alu 0 149 10 1 1015 29 0 0 0 chr12 56438615 56438644 -64818886 + AT_rich Low_complexity Low_complexity 1 29 0 1 1015 466 261 146 21 chr12 56438867 56439059 -64818471 - ID_B1 SINE B4 -8 216 1 1 1015 283 266 19 38 chr12 56439338 56439498 -64818032 + CT-rich Low_complexity Low_complexity 3 159 0 1 1015 207 196 0 0 chr12 56439700 56439735 -64817795 + T-rich Low_complexity Low_complexity 17 51 0 1 1015 1692 36 0 0 chr12 56439735 56439928 -64817602 - B2_Mm1a SINE B2 0 193 1 1 1015 207 196 0 0 chr12 56439928 56439943 -64817587 + T-rich Low_complexity Low_complexity 2 16 0 1 1015 342 117 38 25 chr12 56439958 56440037 -64817493 - PB1D9 SINE Alu 0 120 41 1 1015 420 246 0 0 chr12 56440041 56440283 -64817247 + CT-rich Low_complexity Low_complexity 1 242 0 1 1015 696 247 6 6 chr12 56441126 56441289 -64816241 + ID_B1 SINE B4 4 166 -58 1 1015 211 246 15 30 chr12 56441289 56441356 -64816174 + MIRb SINE MIR 130 195 -73 1 1015 587 179 17 59 chr12 56441526 56441645 -64815885 + PB1D9 SINE Alu 2 115 -5 1 1015 2306 88 12 35 chr12 56441735 56442076 -64815454 + Lx LINE L1 6310 6642 -12 1 1015 213 39 0 0 chr12 56442076 56442102 -64815428 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1015 189 147 0 0 chr12 56442194 56442228 -64815302 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1015 922 175 81 114 chr12 56442242 56442513 -64815017 + RMER1B Other Other 805 1066 0 1 1015 257 296 25 0 chr12 56442794 56442875 -64814655 + ID4 SINE ID 1 83 0 1 1015 343 150 50 0 chr12 56442910 56442988 -64814542 + B1F2 SINE Alu 24 108 -41 1 1015 482 196 10 19 chr12 56443042 56443146 -64814384 - ID_B1 SINE B4 0 224 122 1 1015 1359 61 55 6 chr12 56443301 56443458 -64814072 + B2_Mm1t SINE B2 2 158 -35 1 1015 360 0 0 0 chr12 56443458 56443498 -64814032 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 1015 1359 61 55 6 chr12 56443498 56443522 -64814008 + B2_Mm1t SINE B2 159 192 -1 1 1015 577 196 0 19 chr12 56443551 56443655 -64813875 + B3A SINE B2 1 102 -96 1 1015 604 246 104 0 chr12 56443672 56443806 -64813724 + B1_Mus1 SINE Alu 1 148 0 1 1015 351 0 0 0 chr12 56444018 56444057 -64813473 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1015 360 309 61 54 chr12 56444058 56444205 -64813325 - RSINE1 SINE B4 -2 163 16 1 1015 3286 31 8 22 chr12 56444286 56444688 -64812842 + MTA_Mm LTR MaLR 1 396 0 1 1015 23 0 0 0 chr12 56446124 56446147 -64811383 + AT_rich Low_complexity Low_complexity 1 23 0 1 1015 632 202 189 11 chr12 56446203 56446383 -64811147 - B3 SINE B2 -4 212 1 1 1015 872 164 14 14 chr12 56446445 56446593 -64810937 - B1_Mur2 SINE Alu -1 148 1 1 1015 391 262 67 19 chr12 56446731 56446836 -64810694 + RSINE1 SINE B4 56 165 0 1 1015 237 211 0 0 chr12 56446836 56446893 -64810637 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1015 1243 184 10 0 chr12 56446921 56447128 -64810402 + B3 SINE B2 3 211 -5 1 1015 375 23 0 0 chr12 56447228 56447272 -64810258 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1015 322 233 3 6 chr12 56447278 56447348 -64810182 + B4 SINE B4 235 290 -2 1 1015 999 205 84 0 chr12 56447411 56447601 -64809929 + B3 SINE B2 1 206 -10 1 1015 2109 118 56 3 chr12 56447747 56448070 -64809460 - MTC LTR MaLR -78 343 4 1 1015 1021 191 28 38 chr12 56448242 56448454 -64809076 + B3 SINE B2 1 210 -6 1 1015 320 269 49 37 chr12 56448494 56448575 -64808955 + PB1D7 SINE Alu 39 120 0 1 1015 1387 80 16 5 chr12 56448599 56448788 -64808742 + B2_Mm2 SINE B2 1 191 -4 1 1015 1504 53 27 0 chr12 56450668 56450856 -64806674 + B2_Mm1a SINE B2 1 193 0 1 1015 466 192 192 0 chr12 56451348 56451473 -64806057 - B1F2 SINE Alu 0 149 1 1 1015 605 258 40 7 chr12 56451491 56451643 -64805887 + RSINE1 SINE B4 2 158 -7 1 1015 355 189 240 28 chr12 56451662 56451785 -64805745 - ID_B1 SINE B4 -2 222 78 1 1015 24 77 0 0 chr12 56451869 56451921 -64805609 + AT_rich Low_complexity Low_complexity 1 52 0 1 1015 575 222 126 23 chr12 56451946 56452121 -64805409 - B3A SINE B2 -3 195 3 1 1015 464 307 9 0 chr12 56452133 56452247 -64805283 - ID_B1 SINE B4 0 224 110 1 1015 619 181 232 12 chr12 56452518 56452686 -64804844 + ID_B1 SINE B4 1 205 -19 1 1015 432 0 0 0 chr12 56452839 56452887 -64804643 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1015 221 57 29 0 chr12 56453333 56453368 -64804162 + (TTAG)n Simple_repeat Simple_repeat 2 37 0 1 1015 992 231 19 9 chr12 56453382 56453596 -64803934 - ID_B1 SINE B4 -6 218 3 1 1015 1162 139 71 15 chr12 56453667 56453864 -64803666 - B3 SINE B2 -8 208 1 1 1015 684 267 6 6 chr12 56453937 56454077 -64803453 + RSINE1 SINE B4 4 142 -23 1 1015 330 26 0 0 chr12 56454077 56454116 -64803414 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1015 684 267 6 6 chr12 56454116 56454137 -64803393 + RSINE1 SINE B4 143 164 -1 1 1015 493 341 53 30 chr12 56454261 56454560 -64802970 - L3 LINE CR1 -2156 2333 2028 1 1015 195 69 0 0 chr12 56454775 56454804 -64802726 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1 1015 433 244 39 39 chr12 56455685 56455813 -64801717 - B1F2 SINE Alu 0 149 22 1 1015 239 111 42 62 chr12 56455828 56455876 -64801654 - PB1D10 SINE Alu 0 117 71 1 1015 1041 190 122 0 chr12 56456305 56456526 -64801004 - MTD LTR MaLR -22 397 150 1 1015 873 198 60 0 chr12 56456738 56456905 -64800625 - MTD LTR MaLR -241 178 2 1 1015 563 296 21 0 chr12 56457210 56457352 -64800178 - RSINE1 SINE B4 -19 146 2 1 1015 286 261 172 11 chr12 56457354 56457447 -64800083 - B1F SINE Alu 0 149 42 1 1015 199 337 94 42 chr12 56457505 56457601 -64799929 - L2b LINE L2 -1 3374 3274 1 1015 1174 74 0 0 chr12 56457733 56457881 -64799649 + B1_Mus1 SINE Alu 1 148 0 1 1015 282 57 37 19 chr12 56458154 56458208 -64799322 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1015 181 200 0 54 chr12 56458292 56458329 -64799201 + L4 LINE RTE 191 225 -1804 1 1015 247 264 0 0 chr12 56459014 56459067 -64798463 - RSINE1 SINE B4 -88 77 25 1 1015 338 312 40 8 chr12 56459073 56459199 -64798331 + B1F2 SINE Alu 1 130 -19 1 1015 676 206 103 0 chr12 56459538 56459674 -64797856 + RSINE1 SINE B4 2 151 -14 1 1015 405 294 80 7 chr12 56459725 56459862 -64797668 + ID_B1 SINE B4 70 216 -8 1 1015 326 197 30 0 chr12 56460515 56460581 -64796949 - ID2 SINE ID -11 72 5 1 1015 401 254 55 8 chr12 56460597 56460713 -64796817 - B1F1 SINE Alu -8 141 20 1 1015 2921 152 71 20 chr12 56460713 56461262 -64796268 - RLTR20B3 LTR ERVK 0 577 1 1 1015 308 172 69 0 chr12 56461571 56461629 -64795901 - PB1D9 SINE Alu -52 68 7 1 1015 218 268 39 78 chr12 56461579 56461656 -64795874 - B4 SINE B4 -150 142 69 1 1015 375 343 39 73 chr12 56461673 56461911 -64795619 + MIR SINE MIR 12 247 -21 1 1015 185 284 145 26 chr12 56462399 56462475 -64795055 - MIRm SINE MIR -109 167 83 1 1015 723 154 65 0 chr12 56462564 56462687 -64794843 - B1_Mur1 SINE Alu -17 132 2 1 1015 369 247 0 12 chr12 56463057 56463139 -64794391 - ID4 SINE ID -2 81 1 1 1015 755 225 45 56 chr12 56463157 56463355 -64794175 - B3A SINE B2 0 198 3 1 1015 477 256 78 28 chr12 56463379 56463520 -64794010 - B1F SINE Alu 0 149 2 1 1015 301 308 155 9 chr12 56463864 56464077 -64793453 - HAL1 LINE L1 -2234 273 30 1 1015 1050 198 64 0 chr12 56464503 56464705 -64792825 + B3 SINE B2 2 216 0 1 1015 201 167 0 0 chr12 56464935 56464971 -64792559 + T-rich Low_complexity Low_complexity 1 36 0 1 1015 198 297 160 25 chr12 56465017 56465217 -64792313 - MIRc SINE MIR -2 266 37 1 1015 673 230 6 51 chr12 56465585 56465741 -64791789 - B1_Mur3 SINE Alu 0 149 1 1 1015 729 200 189 0 chr12 56465743 56465918 -64791612 - B3 SINE B2 -7 209 2 1 1015 766 141 19 84 chr12 56466771 56466926 -64790604 - B2_Mm2 SINE B2 -27 168 24 1 1015 1019 186 20 10 chr12 56466979 56467174 -64790356 + B3 SINE B2 3 199 -17 1 1015 1370 44 65 11 chr12 56468101 56468285 -64789245 + B2_Mm2 SINE B2 1 194 -1 1 1015 958 89 88 7 chr12 56468487 56468508 -64789022 - B2_Mm2 SINE B2 -4 191 160 1 1015 342 0 0 0 chr12 56468508 56468546 -64788984 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1 1015 958 89 88 7 chr12 56468546 56468671 -64788859 - B2_Mm2 SINE B2 -36 159 33 1 1015 356 0 0 22 chr12 56468671 56468716 -64788814 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1015 450 145 42 90 chr12 56468722 56468911 -64788619 - RMER17C LTR ERVK -136 274 95 1 1015 306 109 0 42 chr12 56468905 56468953 -64788577 - B2_Mm2 SINE B2 -149 46 1 1 1015 903 240 30 0 chr12 56469299 56469499 -64788031 + B3 SINE B2 2 207 -9 1 1015 249 257 122 48 chr12 56470698 56470845 -64786685 + L1MC5 LINE L1 7328 7485 -476 1 1015 329 204 67 114 chr12 56470857 56470962 -64786568 + PB1 SINE Alu 19 118 -9 1 1015 696 240 30 23 chr12 56471083 56471249 -64786281 - B1F1 SINE Alu -4 307 6 1 1015 375 259 59 0 chr12 56471277 56471362 -64786168 - B1F2 SINE Alu -59 90 1 1 1015 588 259 0 15 chr12 56471532 56471665 -64785865 + RSINE1 SINE B4 2 132 -33 1 1015 273 29 0 0 chr12 56471683 56471717 -64785813 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1015 880 152 14 0 chr12 56471717 56471855 -64785675 - B1_Mur4 SINE Alu -10 140 1 1 1015 1284 27 0 0 chr12 56471895 56472042 -64785488 + B1_Mus2 SINE Alu 1 147 0 1 1015 291 231 0 30 chr12 56472496 56472563 -64784967 + RLTR25A LTR ERVK 508 572 -531 1 1015 806 39 39 0 chr12 56472505 56472608 -64784922 + B1_Mm SINE Alu 41 147 0 1 1015 576 0 0 0 chr12 56472615 56472679 -64784851 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1 1015 578 284 5 64 chr12 56472691 56472894 -64784636 - B3A SINE B2 -6 192 2 1 1015 355 291 47 37 chr12 56473250 56473357 -64784173 - PB1D10 SINE Alu -41 108 1 1 1015 250 339 58 42 chr12 56473357 56473386 -64784144 - ID SINE ID -143 81 51 1 1015 258 265 46 64 chr12 56473879 56473988 -64783542 - PB1D9 SINE Alu -13 107 1 1 1015 418 226 31 108 chr12 56474175 56474304 -64783226 + RSINE1 SINE B4 47 165 0 1 1015 381 298 88 0 chr12 56474338 56474452 -64783078 + PB1 SINE Alu 1 124 -3 1 1015 366 23 0 0 chr12 56474590 56474633 -64782897 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1015 344 257 159 0 chr12 56474738 56474851 -64782679 - B1F SINE Alu -18 131 1 1 1015 576 278 7 29 chr12 56475135 56475272 -64782258 - RSINE1 SINE B4 -22 143 10 1 1015 1120 78 0 0 chr12 56475430 56475565 -64781965 + B1_Mus2 SINE Alu 2 136 -11 1 1015 408 20 0 0 chr12 56475565 56475614 -64781916 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1015 4863 45 5 3 chr12 56475620 56476206 -64781324 - LTRIS_Mus LTR ERV1 0 587 1 1 1015 207 0 0 0 chr12 56476435 56476458 -64781072 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1015 1154 52 0 0 chr12 56476476 56476612 -64780918 - B1_Mus1 SINE Alu -12 136 1 1 1015 569 239 0 26 chr12 56476682 56476798 -64780732 - PB1D10 SINE Alu -4 113 1 1 1015 415 235 9 84 chr12 56476805 56476850 -64780680 + RSINE1 SINE B4 45 85 -80 1 1015 3182 71 89 93 chr12 56476850 56477364 -64780166 - RLTR1B LTR ERV1 0 512 1 1 1015 415 235 9 84 chr12 56477364 56477425 -64780105 + RSINE1 SINE B4 86 143 -22 1 1015 763 176 79 22 chr12 56477473 56477612 -64779918 + B1_Mus1 SINE Alu 2 148 0 1 1015 538 281 30 0 chr12 56477800 56477935 -64779595 + ID_B1 SINE B4 81 219 -5 1 1015 807 236 59 0 chr12 56478757 56478960 -64778570 + ID_B1 SINE B4 2 216 -8 1 1015 237 83 0 0 chr12 56478962 56478998 -64778532 + (GGGGA)n Simple_repeat Simple_repeat 1 36 0 1 1015 607 53 32 0 chr12 56480018 56480113 -64777417 + (GTTTG)n Simple_repeat Simple_repeat 2 99 0 1 1015 227 311 0 63 chr12 56480483 56480562 -64776968 + Tigger7 DNA MER2_type 341 414 -2077 1 1015 238 301 11 88 chr12 56480840 56480870 -64776660 - B4 SINE B4 -207 85 2 1 1015 289 269 60 0 chr12 56480857 56480924 -64776606 - tRNA-Ala-GCY_ tRNA tRNA -2 73 3 1 1015 354 229 0 0 chr12 56480870 56480931 -64776599 - ID4_ SINE ID -21 62 2 1 1015 585 242 78 52 chr12 56481055 56481247 -64776283 - B3A SINE B2 0 198 2 1 1015 366 273 99 0 chr12 56481247 56481419 -64776111 + L1MA8 LINE L1 6100 6288 -3 1 1015 486 271 58 113 chr12 56481437 56481799 -64775731 + L1MC5 LINE L1 7357 7698 -263 1 1015 393 239 87 29 chr12 56481843 56481981 -64775549 - B1F2 SINE Alu -3 146 1 1 1015 4510 37 26 4 chr12 56482091 56482633 -64774897 - L1Md_F2 LINE L1 0 6582 6029 1 1015 596 294 89 27 chr12 56482854 56483078 -64774452 + B4A SINE B4 55 292 0 1 1015 265 253 121 40 chr12 56483537 56483636 -64773894 - PB1D10 SINE Alu -7 110 4 1 1015 435 270 32 51 chr12 56483636 56483724 -64773806 - ID SINE ID -138 86 2 1 1015 360 311 47 0 chr12 56483799 56483905 -64773625 - PB1 SINE Alu -16 111 1 1 1015 707 129 59 25 chr12 56484039 56484158 -64773372 - B1_Mur4 SINE Alu -1 149 27 1 1015 321 270 92 68 chr12 56484044 56484207 -64773323 - B4A SINE B4 -71 221 55 1 1015 592 218 60 0 chr12 56484232 56484365 -64773165 - B1_Mur1 SINE Alu -5 144 4 1 1015 247 284 14 43 chr12 56484465 56484535 -64772995 - B1F SINE Alu -77 72 5 1 1015 824 248 131 8 chr12 56484567 56484827 -64772703 + B4 SINE B4 1 292 0 1 1015 2159 138 109 50 chr12 56485329 56486049 -64771481 + RMER21B LTR ERV1 3 935 -12 1 1015 1446 79 16 0 chr12 56486167 56486357 -64771173 - B2_Mm2 SINE B2 -1 194 2 1 1015 238 254 95 0 chr12 56486363 56486426 -64771104 - ID_B1 SINE B4 -2 222 154 1 1015 232 278 113 25 chr12 56486426 56486457 -64771073 - B1_Mur1 SINE Alu -2 147 46 1 1015 189 74 0 0 chr12 56486502 56486529 -64771001 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1 1015 895 169 0 0 chr12 56486538 56486674 -64770856 - B1_Mus1 SINE Alu -12 136 1 1 1015 501 225 175 0 chr12 56486736 56486856 -64770674 + ID_B1 SINE B4 82 222 -2 1 1015 495 0 0 0 chr12 56487464 56487519 -64770011 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1015 263 194 32 16 chr12 56487907 56487970 -64769560 - MER5A1 DNA MER1_type 0 166 103 1 1015 705 274 96 25 chr12 56488163 56488403 -64769127 - B4 SINE B4 -8 284 28 1 1015 313 274 137 0 chr12 56488413 56488530 -64769000 + LTR78 LTR ERV1 1046 1178 -126 1 1015 1128 122 94 33 chr12 56488532 56488744 -64768786 - URR1A DNA MER1_type -1 225 1 1 1015 230 273 0 0 chr12 56488871 56488926 -64768604 - L1M5 LINE L1 -407 5757 5703 1 1015 413 230 146 15 chr12 56489149 56489212 -64768318 + ID SINE ID 2 82 -142 1 1015 249 237 160 30 chr12 56489212 56489312 -64768218 + PB1D10 SINE Alu 1 113 -4 1 1015 721 250 0 6 chr12 56489317 56489475 -64768055 + ID_B1 SINE B4 71 223 -1 1 1015 261 0 0 0 chr12 56489537 56489566 -64767964 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1015 399 228 22 0 chr12 56490142 56490234 -64767296 + ID_B1 SINE B4 126 219 -5 1 1015 412 202 90 10 chr12 56490545 56490645 -64766885 + ID_B1 SINE B4 113 220 -4 1 1016 5306 139 40 8 chr12 56492039 56492913 -64764617 - RMER19B LTR ERVK 0 902 1 1 1016 939 241 10 25 chr12 56492983 56493187 -64764343 + B3 SINE B2 4 204 -12 1 1016 225 0 0 0 chr12 56493419 56493444 -64764086 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1016 308 24 24 0 chr12 56493507 56493548 -64763982 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1016 248 239 206 15 chr12 56495056 56495124 -64762406 + ID4_ SINE ID 2 82 -1 1 1016 619 202 69 111 chr12 56496198 56496360 -64761170 - B3A SINE B2 -2 196 40 1 1016 1503 58 16 0 chr12 56496360 56496549 -64760981 - B2_Mm2 SINE B2 -1 194 3 1 1016 619 202 69 111 chr12 56496549 56496575 -64760955 - B3A SINE B2 -159 39 16 1 1016 375 78 0 0 chr12 56496598 56496649 -64760881 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1 1016 342 0 0 0 chr12 56497306 56497344 -64760186 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1 1016 1216 43 0 0 chr12 56497346 56497487 -64760043 - B1_Mus2 SINE Alu -6 141 1 1 1016 661 200 50 8 chr12 56498796 56498917 -64758613 - B1_Mus2 SINE Alu -21 126 1 1 1016 877 191 71 71 chr12 56500270 56500495 -64757035 - URR1B DNA MER1_type 0 225 1 1 1016 276 270 149 69 chr12 56501309 56501484 -64756046 + MIRb SINE MIR 20 208 -60 2 1016 25 0 0 0 chr12 56502011 56502036 -64755494 + AT_rich Low_complexity Low_complexity 1 25 0 3 1016 317 252 35 97 chr12 56502055 56502079 -64755451 - RSINE1 SINE B4 -57 108 57 4 1016 347 231 22 133 chr12 56502079 56502103 -64755427 - B3A SINE B2 -118 80 63 5 1016 356 0 23 0 chr12 56502103 56502147 -64755383 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1016 180 111 0 0 chr12 56502148 56502175 -64755355 + (CCTG)n Simple_repeat Simple_repeat 1 27 0 7 1016 317 252 35 97 chr12 56502175 56502238 -64755292 - RSINE1 SINE B4 -109 56 4 4 1016 303 297 113 40 chr12 56502364 56502515 -64755015 - RSINE1 SINE B4 0 165 4 8 1016 1149 51 0 0 chr12 56502584 56502722 -64754808 + B1_Mus2 SINE Alu 1 138 -9 9 1016 1146 62 0 27 chr12 56503098 56503248 -64754282 - B1_Mus1 SINE Alu 0 148 3 1 1016 681 225 33 99 chr12 56503271 56503483 -64754047 - B3A SINE B2 0 198 1 1 1016 185 132 0 26 chr12 56503488 56503527 -64754003 + T-rich Low_complexity Low_complexity 5 42 0 1 1016 433 176 0 13 chr12 56503564 56503639 -64753891 - B1_Mm SINE Alu -3 144 71 1 1016 433 176 0 13 chr12 56503665 56503740 -64753790 - B1_Mm SINE Alu -3 144 71 1 1016 779 114 79 58 chr12 56504158 56504297 -64753233 + B1_Mur4 SINE Alu 9 150 0 1 1016 818 252 24 5 chr12 56504299 56504510 -64753020 - B3 SINE B2 0 216 2 1 1016 812 230 56 102 chr12 56504581 56504886 -64752644 - B4A SINE B4 0 292 2 1 1016 513 200 72 9 chr12 56504916 56505027 -64752503 - RSINE1 SINE B4 -35 130 13 1 1016 434 270 63 0 chr12 56505043 56505154 -64752376 - PB1D7 SINE Alu -1 119 2 1 1016 279 257 100 8 chr12 56505197 56505300 -64752230 + PB1D9 SINE Alu 38 149 0 2 1016 799 244 61 91 chr12 56505298 56505528 -64752002 + B4 SINE B4 70 292 0 2 1016 648 270 22 62 chr12 56505582 56505605 -64751925 - B3 SINE B2 0 216 199 2 1016 1266 20 0 20 chr12 56505605 56505755 -64751775 - B1_Mus1 SINE Alu 0 148 2 2 1016 845 239 21 12 chr12 56505755 56505956 -64751574 - B3A SINE B2 -18 198 1 2 1016 391 217 30 89 chr12 56506019 56506120 -64751410 - PB1D10 SINE Alu -2 115 21 2 1016 216 135 0 0 chr12 56506181 56506218 -64751312 + (CTA)n Simple_repeat Simple_repeat 2 38 0 2 1016 302 308 45 55 chr12 56506222 56506332 -64751198 - RSINE1 SINE B4 -10 155 47 2 1016 875 239 23 1 chr12 56506332 56506549 -64750981 - MTD LTR MaLR 0 421 188 2 1016 851 195 7 0 chr12 56506672 56506821 -64750709 + B1_Mur4 SINE Alu 1 150 0 2 1016 293 216 0 0 chr12 56507073 56507124 -64750406 - B1_Mur1 SINE Alu -7 142 92 2 1016 2621 75 25 11 chr12 56507540 56507905 -64749625 + L1Md_F2 LINE L1 6212 6581 -1 3 1016 355 99 347 14 chr12 56507943 56508015 -64749515 + PB1D9 SINE Alu 18 113 -7 3 1016 226 137 0 105 chr12 56507968 56508025 -64749505 + ID_B1 SINE B4 174 224 0 3 1016 466 261 88 25 chr12 56508034 56508200 -64749330 - ID_B1 SINE B4 -3 221 41 3 1016 1155 82 0 0 chr12 56508200 56508347 -64749183 - B1_Mm SINE Alu 0 147 1 3 1016 466 261 88 25 chr12 56508347 56508384 -64749146 - ID SINE ID -184 40 5 3 1016 279 0 0 0 chr12 56508404 56508435 -64749095 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1016 370 294 129 29 chr12 56509169 56509309 -64748221 - RSINE1 SINE B4 -1 164 11 3 1016 675 252 65 51 chr12 56509421 56509574 -64747956 - B4A SINE B4 -12 280 130 3 1016 405 0 0 0 chr12 56509574 56509619 -64747911 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1016 675 252 65 51 chr12 56509619 56509741 -64747789 - B4A SINE B4 -163 129 2 3 1016 505 220 58 17 chr12 56509845 56509965 -64747565 - B1_Mur1 SINE Alu -1 119 1 2 1016 428 266 8 50 chr12 56509972 56510091 -64747439 - PB1D10 SINE Alu -3 114 1 3 1016 481 235 47 59 chr12 56510324 56510496 -64747034 + B3 SINE B2 1 186 -9 4 1016 704 169 10 1 chr12 56510558 56510680 -64746850 - B1_Mus1 SINE Alu -103 208 11 4 1016 456 280 16 33 chr12 56510707 56510829 -64746701 - RSINE1 SINE B4 -2 163 44 4 1016 21 0 0 0 chr12 56511396 56511417 -64746113 + AT_rich Low_complexity Low_complexity 1 21 0 4 1016 329 0 24 0 chr12 56511573 56511614 -64745916 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1016 561 30 0 0 chr12 56511618 56511685 -64745845 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1016 264 93 186 0 chr12 56511685 56511728 -64745802 - B1_Mur3 SINE Alu -13 136 86 4 1016 333 172 0 17 chr12 56511726 56511785 -64745745 - B3 SINE B2 -154 62 5 4 1016 498 59 0 0 chr12 56511911 56512006 -64745524 - L1Md_T LINE L1 0 6582 6515 4 1016 1619 42 0 0 chr12 56512086 56512276 -64745254 - B2_Mm1a SINE B2 -3 190 1 4 1016 1027 59 73 0 chr12 56512333 56512469 -64745061 + B1_Mus2 SINE Alu 2 147 0 5 1016 500 185 9 44 chr12 56513594 56513608 -64743922 - ID_B1 SINE B4 -34 190 82 5 1016 787 61 0 0 chr12 56513608 56513707 -64743823 - B1_Mus2 SINE Alu -48 99 1 5 1016 2545 26 10 10 chr12 56513710 56514018 -64743512 - L1Md_F2 LINE L1 0 6582 6275 5 1016 231 273 154 74 chr12 56514099 56514117 -64743413 - B2_Mm2 SINE B2 -19 176 2 5 1016 450 278 76 0 chr12 56514117 56514261 -64743269 - RSINE1 SINE B4 -8 157 3 5 1016 258 361 47 78 chr12 56514355 56514484 -64743046 + B4 SINE B4 1 125 -167 5 1016 567 296 0 7 chr12 56514571 56514717 -64742813 + B1F1 SINE Alu 1 145 -4 5 1016 216 97 0 0 chr12 56515003 56515034 -64742496 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 5 1016 809 136 16 0 chr12 56515046 56515171 -64742359 - B1_Mur3 SINE Alu -22 127 1 5 1016 431 270 68 62 chr12 56515171 56515189 -64742341 - B4 SINE B4 -69 220 77 6 1016 441 200 11 22 chr12 56515643 56515735 -64741795 + PB1D10 SINE Alu 26 116 -1 6 1016 970 83 15 15 chr12 56515737 56515872 -64741658 + B1_Mus1 SINE Alu 2 136 -12 6 1016 198 0 0 0 chr12 56515874 56515896 -64741634 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1016 313 278 0 14 chr12 56515903 56515976 -64741554 + ID4_ SINE ID 10 81 -2 6 1016 426 69 0 0 chr12 56516077 56516135 -64741395 + (CACG)n Simple_repeat Simple_repeat 1 58 0 6 1016 337 278 93 67 chr12 56516483 56516676 -64740854 - RLTR12B LTR ERVK -22 506 309 6 1016 348 253 7 0 chr12 56516902 56517004 -64740526 - PB1D10 SINE Alu -8 109 7 6 1016 264 323 31 0 chr12 56516922 56517018 -64740512 - ID_B1 SINE B4 -54 170 72 6 1016 311 250 59 12 chr12 56517343 56517428 -64740102 + PB1D10 SINE Alu 27 115 -2 6 1016 1014 65 7 0 chr12 56517467 56517606 -64739924 - B1_Mus1 SINE Alu 0 148 9 7 1016 745 210 14 7 chr12 56517620 56517759 -64739771 - B1_Mur4 SINE Alu -6 144 5 7 1016 251 270 53 13 chr12 56517782 56517857 -64739673 + ID4_ SINE ID 4 81 -2 7 1016 673 262 0 65 chr12 56518020 56518175 -64739355 + ID_B1 SINE B4 79 223 -1 7 1016 1014 159 48 100 chr12 56518241 56518472 -64739058 + URR1B DNA MER1_type 7 225 0 7 1016 309 309 65 42 chr12 56518472 56518564 -64738966 - CYRA11_Mm Unknown Y-chromosome -437 180 84 7 1016 242 234 136 49 chr12 56519027 56519189 -64738341 + L1MC5 LINE L1 7755 7930 -31 7 1016 390 290 73 0 chr12 56519896 56519910 -64737620 - B4 SINE B4 -69 223 91 7 1016 521 236 27 0 chr12 56519910 56520020 -64737510 - B1_Mus2 SINE Alu -29 118 6 7 1016 729 259 42 11 chr12 56520145 56520336 -64737194 - B3A SINE B2 0 198 2 7 1016 456 243 133 31 chr12 56520441 56520605 -64736925 - B3A SINE B2 -10 185 9 8 1016 656 193 89 0 chr12 56520615 56520750 -64736780 - B1_Mus2 SINE Alu 0 147 1 8 1016 204 67 0 0 chr12 56521299 56521329 -64736201 + (TTCG)n Simple_repeat Simple_repeat 2 31 0 8 1016 1089 70 28 0 chr12 56522079 56522222 -64735308 + B1_Mus2 SINE Alu 1 147 0 8 1016 366 246 77 103 chr12 56522430 56522625 -64734905 - RMER10A LTR ERVL -249 193 4 8 1016 996 200 66 212 chr12 56522968 56523406 -64734124 + ORR1D1 LTR MaLR 1 374 0 8 1016 919 158 0 7 chr12 56523511 56523658 -64733872 - B1_Mur3 SINE Alu -2 147 2 8 1016 390 275 42 28 chr12 56523722 56523864 -64733666 - RSINE1 SINE B4 -19 146 3 8 1016 248 0 31 0 chr12 56523916 56523948 -64733582 + (GA)n Simple_repeat Simple_repeat 1 33 0 8 1016 1155 44 0 0 chr12 56523983 56524119 -64733411 + B1_Mus2 SINE Alu 1 136 -11 8 1016 249 57 0 0 chr12 56524121 56524156 -64733374 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1016 379 253 50 40 chr12 56524807 56524906 -64732624 - PB1D10 SINE Alu -5 112 13 9 1016 1882 104 208 7 chr12 56525087 56525421 -64732109 - ORR1B1 LTR MaLR -8 386 1 9 1016 278 272 90 62 chr12 56525605 56525750 -64731780 + Charlie4z DNA MER1_type 14 162 -5 9 1016 687 235 7 7 chr12 56525860 56525997 -64731533 - B1F2 SINE Alu -1 148 12 9 1016 294 358 34 81 chr12 56525864 56526013 -64731517 - B4 SINE B4 -70 222 81 9 1016 724 287 0 0 chr12 56526062 56526205 -64731325 - RSINE1 SINE B4 -20 145 3 9 1016 406 264 60 60 chr12 56526286 56526435 -64731095 + B1_Mur1 SINE Alu 1 149 0 9 1016 1073 185 49 0 chr12 56526486 56526691 -64730839 + B3 SINE B2 2 216 0 9 1016 1305 86 0 21 chr12 56526711 56526901 -64730629 + B2_Mm2 SINE B2 1 186 -9 9 1016 653 274 30 59 chr12 56527177 56527414 -64730116 - Lx9 LINE L1 -454 7190 6961 1 1016 421 212 35 64 chr12 56527448 56527589 -64729941 + L1MC2 LINE L1 4859 4995 -1151 1 1016 738 199 123 0 chr12 56527590 56527736 -64729794 - B3 SINE B2 -49 167 4 1 1016 3760 157 71 11 chr12 56527736 56528369 -64729161 + RMER1B Other Other 396 1066 0 1 1016 548 276 28 99 chr12 56528403 56528616 -64728914 - B3A SINE B2 0 198 1 1 1016 369 0 0 0 chr12 56528622 56528663 -64728867 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 1 1016 569 256 51 0 chr12 56528664 56528801 -64728729 - B1F2 SINE Alu -5 144 1 1 1016 21 0 0 0 chr12 56528865 56528886 -64728644 + AT_rich Low_complexity Low_complexity 1 21 0 1 1016 590 207 114 0 chr12 56528887 56529027 -64728503 - RSINE1 SINE B4 -6 159 4 1 1016 22 0 0 0 chr12 56529042 56529064 -64728466 + AT_rich Low_complexity Low_complexity 1 22 0 1 1016 462 252 0 0 chr12 56529171 56529282 -64728248 - PB1D10 SINE Alu -6 111 1 1 1016 1100 75 0 40 chr12 56529397 56529549 -64727981 + B1_Mus1 SINE Alu 2 147 -1 1 1016 200 93 0 44 chr12 56529554 56529599 -64727931 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1016 723 200 99 31 chr12 56529700 56529891 -64727639 + ID_B1 SINE B4 3 206 -18 1 1016 338 180 146 0 chr12 56529909 56529998 -64727532 + L1MC2 LINE L1 5272 5373 -971 1 1016 307 218 35 93 chr12 56530002 56530088 -64727442 + B3A SINE B2 1 81 -117 1 1016 1137 248 261 36 chr12 56530156 56530801 -64726729 + L1MC2 LINE L1 5336 6125 -1917 1 1016 766 154 23 0 chr12 56530801 56530931 -64726599 + B1F1 SINE Alu 1 133 -16 1 1016 428 302 28 28 chr12 56530976 56531119 -64726411 + RSINE1 SINE B4 4 146 -19 1 1016 2731 199 51 9 chr12 56531139 56531306 -64726224 - Lx6 LINE L1 -4 7456 7279 1 1016 186 71 0 0 chr12 56531306 56531334 -64726196 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1016 2731 199 51 9 chr12 56531334 56531694 -64725836 - Lx6 LINE L1 -182 7278 6908 1 1016 674 96 10 0 chr12 56531753 56531857 -64725673 + (TC)n Simple_repeat Simple_repeat 1 105 0 1 1016 186 43 0 0 chr12 56532179 56532202 -64725328 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1016 799 254 219 0 chr12 56532236 56532492 -64725038 - Lx9 LINE L1 -509 7135 6824 1 1016 235 191 110 184 chr12 56532505 56532614 -64724916 - Lx9 LINE L1 -793 6851 6751 1 1016 308 130 26 0 chr12 56532618 56532695 -64724835 + (TAAA)n Simple_repeat Simple_repeat 4 82 0 1 1016 514 192 242 55 chr12 56532718 56532900 -64724630 + B3 SINE B2 1 216 0 1 1016 565 252 58 42 chr12 56532915 56533155 -64724375 - Lx9 LINE L1 -889 6755 6512 1 1016 492 153 0 0 chr12 56533279 56533364 -64724166 + A-rich Low_complexity Low_complexity 1 85 0 1 1016 815 211 82 26 chr12 56533991 56534186 -64723344 - B3 SINE B2 -10 206 1 1 1016 207 0 0 0 chr12 56535243 56535266 -64722264 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1016 540 262 111 0 chr12 56535551 56535677 -64721853 + ID_B1 SINE B4 84 223 -1 1 1016 723 234 29 23 chr12 56535739 56535914 -64721616 + B3 SINE B2 41 216 0 1 1016 753 148 0 0 chr12 56535932 56536060 -64721470 + (GAAA)n Simple_repeat Simple_repeat 4 131 0 1 1016 576 53 0 0 chr12 56536408 56536484 -64721046 + (TCC)n Simple_repeat Simple_repeat 1 76 0 1 1016 396 0 0 0 chr12 56536484 56536528 -64721002 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 1 1016 1172 37 0 0 chr12 56536528 56536663 -64720867 - B1_Mus2 SINE Alu -12 135 1 1 1016 337 237 91 20 chr12 56537076 56537175 -64720355 - PB1D9 SINE Alu -13 107 2 1 1016 824 244 48 5 chr12 56537216 56537426 -64720104 + ID_B1 SINE B4 2 220 -4 1 1016 474 231 46 150 chr12 56538814 56538987 -64718543 - B3A SINE B2 -6 192 26 1 1016 477 179 26 35 chr12 56538997 56539113 -64718417 - PB1D9 SINE Alu 0 120 6 1 1016 304 231 173 47 chr12 56538999 56539126 -64718404 - B4 SINE B4 -69 223 81 1 1016 207 0 0 0 chr12 56539126 56539149 -64718381 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1016 551 197 32 12 chr12 56540260 56540419 -64717111 - B3 SINE B2 0 198 33 1 1016 306 247 13 0 chr12 56540448 56540525 -64717005 + B3A SINE B2 1 78 -120 1 1016 246 62 0 0 chr12 56540556 56540588 -64716942 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1016 508 211 96 0 chr12 56540732 56540836 -64716694 + ID_B1 SINE B4 105 218 -6 1 1016 264 292 45 0 chr12 56541049 56541138 -64716392 - PB1D10 SINE Alu -3 114 22 1 1016 435 290 118 21 chr12 56541351 56541538 -64715992 - MIRb SINE MIR -19 249 45 1 1016 276 30 0 0 chr12 56542392 56542425 -64715105 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1016 389 220 69 20 chr12 56542426 56542528 -64715002 - PB1D10 SINE Alu -9 108 2 1 1016 208 200 0 52 chr12 56542582 56542640 -64714890 + CT-rich Low_complexity Low_complexity 3 57 0 1 1016 560 118 10 0 chr12 56542642 56542665 -64714865 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1016 1132 48 0 52 chr12 56542665 56542819 -64714711 - B1_Mus1 SINE Alu 0 148 3 1 1016 560 118 10 0 chr12 56542819 56542897 -64714633 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 1016 403 236 89 18 chr12 56542925 56543037 -64714493 - ID_B1 SINE B4 -3 221 102 1 1016 485 213 125 8 chr12 56543058 56543186 -64714344 - ID_B1 SINE B4 0 224 82 1 1016 198 0 0 0 chr12 56543794 56543816 -64713714 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 1 1016 404 240 67 9 chr12 56543817 56543922 -64713608 - PB1D7 SINE Alu -8 112 2 1 1016 306 0 0 0 chr12 56544706 56544740 -64712790 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1016 267 164 0 0 chr12 56545413 56545474 -64712056 + GA-rich Low_complexity Low_complexity 2 62 0 1 1016 321 294 43 11 chr12 56545474 56545567 -64711963 - RSINE1 SINE B4 -25 140 45 1 1016 425 288 58 13 chr12 56545612 56545767 -64711763 - RSINE1 SINE B4 0 165 4 1 1016 908 73 97 0 chr12 56545824 56545948 -64711582 + B1_Mus1 SINE Alu 1 136 -12 1 1016 186 43 0 0 chr12 56545951 56545974 -64711556 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1016 1150 66 0 0 chr12 56546334 56546471 -64711059 - B1_Mm SINE Alu -10 137 1 1 1016 1037 107 198 22 chr12 56546494 56546676 -64710854 - B3 SINE B2 0 216 3 1 1016 650 249 52 52 chr12 56546715 56546927 -64710603 - RLTR42-int LTR ERVK -4122 1400 1189 1 1016 834 195 14 80 chr12 56548652 56548864 -64708666 - B3A SINE B2 0 198 1 1 1016 1200 42 7 0 chr12 56548885 56549029 -64708501 + B1_Mus1 SINE Alu 4 148 0 1 1016 302 280 0 26 chr12 56549535 56549612 -64707918 + B4 SINE B4 1 75 -217 1 1016 891 263 38 38 chr12 56549626 56549887 -64707643 - Lx8 LINE L1 -401 7072 6812 1 1016 1306 81 18 45 chr12 56549920 56550141 -64707389 + L1_Mus3 LINE L1 6422 6636 -2 1 1016 767 237 208 26 chr12 56550212 56550481 -64707049 + Lx8 LINE L1 7154 7471 -2 1 1016 180 111 0 0 chr12 56550516 56550543 -64706987 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1016 304 220 0 92 chr12 56550551 56550616 -64706914 - PB1D9 SINE Alu -61 59 1 1 1016 338 286 52 39 chr12 56550623 56550743 -64706787 - BLACKJACK DNA AcHobo -492 2452 2329 1 1016 1261 105 11 16 chr12 56550743 56550927 -64706603 + B2_Mm1t SINE B2 2 184 -9 1 1016 338 286 52 39 chr12 56550927 56550959 -64706571 - BLACKJACK DNA AcHobo -616 2328 2298 1 1016 272 311 55 63 chr12 56551454 56551581 -64705949 + LTR33 LTR ERVL 88 213 -302 1 1016 211 279 0 0 chr12 56551699 56551742 -64705788 + (CACG)n Simple_repeat Simple_repeat 4 46 0 1 1016 1190 62 0 0 chr12 56551888 56552033 -64705497 - B1_Mus2 SINE Alu -1 146 2 1 1016 324 0 0 0 chr12 56552056 56552092 -64705438 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1016 770 234 125 20 chr12 56552105 56552353 -64705177 + B4A SINE B4 1 274 -18 1 1016 440 318 70 61 chr12 56552439 56552665 -64704865 + B4A SINE B4 2 229 -63 1 1016 395 191 211 37 chr12 56552665 56552774 -64704756 + B1_Mur1 SINE Alu 1 128 -21 1 1016 270 0 0 0 chr12 56552872 56552902 -64704628 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1016 216 0 0 0 chr12 56553008 56553032 -64704498 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1016 620 289 48 48 chr12 56553073 56553385 -64704145 - RLTR15 LTR ERVK -15 344 33 1 1016 372 282 131 29 chr12 56553431 56553606 -64703924 - B4A SINE B4 -36 256 64 1 1016 599 252 57 7 chr12 56553594 56553734 -64703796 + MTEa LTR MaLR 227 373 -6 1 1016 4326 260 110 52 chr12 56553743 56554289 -64703241 + MTEa-int LTR MaLR 4 581 -999 1 1016 708 254 67 42 chr12 56554289 56554482 -64703048 + B3A SINE B2 1 198 0 1 1016 4326 260 110 52 chr12 56554482 56554653 -64702877 + MTEa-int LTR MaLR 582 748 -832 1 1016 641 13 0 13 chr12 56554653 56554732 -64702798 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1016 4326 260 110 52 chr12 56554732 56555302 -64702228 + MTEa-int LTR MaLR 749 1366 -214 1 1016 249 222 0 0 chr12 56555277 56555322 -64702208 + MTEa LTR MaLR 335 379 0 1 1016 912 72 191 0 chr12 56555485 56555637 -64701893 - B2_Mm2 SINE B2 -10 185 5 1 1016 514 165 0 19 chr12 56555652 56555765 -64701765 - L1MB3 LINE L1 -53 6130 6025 1 1016 1141 215 119 13 chr12 56555823 56556134 -64701396 - MTEb LTR MaLR -2 377 34 1 1016 1467 142 9 4 chr12 56556136 56556363 -64701167 - ORR1C1 LTR MaLR -28 350 123 1 1016 186 97 0 0 chr12 56556575 56556590 -64700940 + (T)n Simple_repeat Simple_repeat 1 15 0 1 1016 1234 28 7 0 chr12 56556590 56556735 -64700795 - B1_Mm SINE Alu 0 147 2 1 1016 186 97 0 0 chr12 56556735 56556750 -64700780 + (T)n Simple_repeat Simple_repeat 1 15 0 1 1016 1126 80 0 0 chr12 56556778 56556916 -64700614 - B1_Mm SINE Alu -9 138 1 1 1016 429 296 68 105 chr12 56556916 56557302 -64700228 - RMER20B LTR ERVK -167 460 30 1 1016 606 144 27 108 chr12 56557344 56557492 -64700038 - ORR1C2 LTR MaLR -248 136 1 1 1016 400 172 128 11 chr12 56558244 56558338 -64699192 + PB1D10 SINE Alu 2 106 -11 1 1016 1145 171 5 0 chr12 56558357 56558550 -64698980 + URR1A DNA MER1_type 33 226 0 2 1016 435 237 77 109 chr12 56560473 56560492 -64697038 + B4 SINE B4 76 223 -66 2 1016 831 164 52 0 chr12 56560492 56560626 -64696904 + B1_Mur2 SINE Alu 9 149 0 2 1016 265 325 12 48 chr12 56561707 56561791 -64695739 + ID4_ SINE ID 2 82 -1 2 1016 365 271 42 0 chr12 56561820 56561916 -64695614 + PB1D7 SINE Alu 19 118 -2 2 1016 302 192 162 14 chr12 56561965 56562039 -64695491 + B4 SINE B4 2 86 -206 2 1016 206 250 0 0 chr12 56562076 56562124 -64695406 + MIR SINE MIR 186 233 -29 2 1016 605 234 58 7 chr12 56562396 56562534 -64694996 + B1_Mur1 SINE Alu 4 148 -1 2 1016 212 234 130 0 chr12 56562687 56562764 -64694766 + L2 LINE L2 2836 2922 -497 2 1016 318 364 100 40 chr12 56562914 56563235 -64694295 + L1M5 LINE L1 5414 5753 -371 2 1016 429 141 0 0 chr12 56563344 56563415 -64694115 + (GGA)n Simple_repeat Simple_repeat 2 72 0 2 1016 251 266 12 81 chr12 56563928 56564014 -64693516 + MT2B2 LTR ERVL 164 243 -341 2 1016 451 192 40 10 chr12 56563941 56564041 -64693489 + PB1D7 SINE Alu 12 114 -6 2 1016 182 171 0 24 chr12 56564043 56564085 -64693445 + GA-rich Low_complexity Low_complexity 4 44 0 2 1016 398 252 55 18 chr12 56564386 56564495 -64693035 + PB1D10 SINE Alu 5 117 0 2 1016 354 295 38 60 chr12 56564519 56564703 -64692827 + B3A SINE B2 2 181 -17 2 1016 333 167 0 0 chr12 56564706 56564784 -64692746 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1016 29 47 0 0 chr12 56564842 56564885 -64692645 + AT_rich Low_complexity Low_complexity 1 43 0 2 1016 245 303 105 0 chr12 56564953 56565029 -64692501 - MER33 DNA MER1_type -192 132 49 2 1016 286 111 56 0 chr12 56565033 56565087 -64692443 + ID4 SINE ID 2 58 -25 2 1016 495 48 0 0 chr12 56565862 56565924 -64691606 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1016 324 328 0 63 chr12 56568432 56568559 -64688971 + PB1 SINE Alu 5 123 -4 2 1016 336 318 36 18 chr12 56569181 56569293 -64688237 - ID_B1 SINE B4 -9 215 102 2 1016 243 0 0 0 chr12 56569481 56569508 -64688022 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1016 180 351 76 59 chr12 56570192 56570310 -64687220 - MIR SINE MIR -70 192 73 2 1016 1967 136 38 97 chr12 56570327 56570750 -64686780 + RMER10B LTR ERVL 1 398 0 2 1016 588 185 64 78 chr12 56570778 56570919 -64686611 - B1F SINE Alu -2 147 9 2 1016 993 55 70 8 chr12 56572100 56572229 -64685301 + B1_Mus1 SINE Alu 2 138 -10 2 1016 315 0 0 0 chr12 56572229 56572264 -64685266 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1016 234 62 0 0 chr12 56572769 56572801 -64684729 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2 1016 1223 74 0 0 chr12 56572806 56572954 -64684576 - B1_Mus1 SINE Alu 0 148 1 2 1016 539 183 185 30 chr12 56572995 56573130 -64684400 - ID_B1 SINE B4 -62 162 7 2 1016 416 235 0 0 chr12 56573607 56573688 -64683842 - ID4 SINE ID -1 82 2 2 1016 3212 132 20 4 chr12 56573758 56574268 -64683262 + RLTR28 LTR ERVL 1 518 -6 2 1016 413 162 62 0 chr12 56575670 56575750 -64681780 - PB1D10 SINE Alu -8 109 25 2 1016 327 25 0 0 chr12 56576143 56576183 -64681347 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1016 335 274 0 21 chr12 56576394 56576491 -64681039 - PB1D10 SINE Alu -18 99 5 2 1016 318 248 128 11 chr12 56576538 56576653 -64680877 - B1F SINE Alu -1 146 20 2 1016 435 248 57 21 chr12 56576709 56576849 -64680681 + ID_B1 SINE B4 80 224 0 2 1016 832 163 0 34 chr12 56576907 56577053 -64680477 + B1_Mur1 SINE Alu 2 142 -7 2 1016 406 258 165 8 chr12 56577161 56577282 -64680248 - RSINE1 SINE B4 -13 152 13 2 1016 434 235 10 30 chr12 56577341 56577442 -64680088 - PB1D10 SINE Alu -16 101 3 2 1016 21 0 0 0 chr12 56577881 56577902 -64679628 + AT_rich Low_complexity Low_complexity 1 21 0 2 1016 504 299 66 0 chr12 56578187 56578324 -64679206 - B1F1 SINE Alu 0 149 4 2 1016 470 274 0 8 chr12 56578330 56578448 -64679082 - PB1D10 SINE Alu 0 117 1 2 1016 240 268 11 89 chr12 56578503 56578593 -64678937 - B4A SINE B4 -167 125 43 2 1016 1259 136 119 0 chr12 56578595 56578725 -64678805 - ORR1B1 LTR MaLR 0 394 247 2 1016 441 95 0 0 chr12 56578725 56578788 -64678742 + (CAGG)n Simple_repeat Simple_repeat 4 66 0 2 1016 1259 136 119 0 chr12 56578788 56578893 -64678637 - ORR1B1 LTR MaLR -148 246 132 2 1016 270 241 17 0 chr12 56578888 56578946 -64678584 - B2_Mm2 SINE B2 -89 106 48 2 1016 1013 95 121 92 chr12 56578979 56579153 -64678377 - B2_Mm1t SINE B2 -14 179 1 2 1016 993 62 0 0 chr12 56579181 56579310 -64678220 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 2 1016 601 208 0 0 chr12 56579335 56579441 -64678089 - B1_Mus1 SINE Alu -36 112 7 2 1016 683 112 7 102 chr12 56579939 56580095 -64677435 - B1_Mur4 SINE Alu -3 147 8 2 1016 359 273 0 43 chr12 56580062 56580177 -64677353 - B3 SINE B2 -106 110 1 2 1016 502 262 70 85 chr12 56580485 56580685 -64676845 - B3A SINE B2 0 198 2 2 1016 21 36 0 0 chr12 56580697 56580725 -64676805 + AT_rich Low_complexity Low_complexity 1 28 0 2 1016 407 164 0 0 chr12 56580767 56580840 -64676690 + B2_Mm2 SINE B2 2 74 -121 2 1016 554 281 11 48 chr12 56580921 56581129 -64676401 + B3A SINE B2 1 187 -8 2 1016 1092 234 5 0 chr12 56582424 56582638 -64674892 + B3 SINE B2 2 216 0 2 1016 444 328 30 0 chr12 56582834 56582968 -64674562 + ID_B1 SINE B4 82 219 -5 2 1016 522 290 29 0 chr12 56582977 56583115 -64674415 + ID_B1 SINE B4 80 221 -3 2 1016 213 261 14 68 chr12 56584008 56584082 -64673448 + ID2 SINE ID 1 70 -13 2 1016 474 18 0 0 chr12 56584096 56584151 -64673379 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1016 366 294 41 16 chr12 56584268 56584389 -64673141 + MLT1A0 LTR MaLR 1 124 -241 2 1016 253 288 62 78 chr12 56584426 56584554 -64672976 + MLT1A0 LTR MaLR 236 361 -29 2 1016 733 287 16 22 chr12 56584602 56584682 -64672848 + ID SINE ID 1 79 -145 2 1016 296 347 17 8 chr12 56584682 56584801 -64672729 + PB1D7 SINE Alu 1 120 0 2 1016 261 0 0 0 chr12 56584937 56584966 -64672564 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2 1016 712 232 86 27 chr12 56585463 56585649 -64671881 + MER110A LTR ERV1 43 239 -229 2 1016 282 130 0 80 chr12 56586275 56586325 -64671205 - PB1D9 SINE Alu -52 68 23 2 1016 378 0 0 0 chr12 56586358 56586400 -64671130 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2 1016 286 272 115 39 chr12 56586431 56586561 -64670969 - RSINE1 SINE B4 -17 148 9 2 1016 225 238 0 0 chr12 56586677 56586719 -64670811 + B1_Mur4 SINE Alu 2 43 -107 2 1016 2699 121 21 28 chr12 56586853 56587087 -64670443 - MTC LTR MaLR 0 421 196 2 1016 921 162 176 10 chr12 56587087 56587280 -64670250 + URR1B DNA MER1_type 1 225 0 2 1016 2699 121 21 28 chr12 56587280 56587469 -64670061 - MTC LTR MaLR -226 195 1 2 1016 267 294 48 19 chr12 56587509 56587613 -64669917 + MER5A1 DNA MER1_type 56 162 -4 2 1016 521 245 19 25 chr12 56588966 56589109 -64668421 - PB1D7 SINE Alu -15 134 1 2 1016 227 306 60 101 chr12 56589109 56589161 -64668369 - MT2B2 LTR ERVL -430 154 109 2 1016 246 62 0 0 chr12 56590815 56590847 -64666683 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1016 287 282 0 40 chr12 56591156 56591230 -64666300 + tRNA-Ala-GCY_ tRNA tRNA 1 71 -4 2 1016 22 70 0 0 chr12 56592967 56593010 -64664520 + GC_rich Low_complexity Low_complexity 1 43 0 2 1016 25 31 0 0 chr12 56593029 56593061 -64664469 + GC_rich Low_complexity Low_complexity 1 32 0 2 1016 24 32 0 0 chr12 56593090 56593121 -64664409 + GC_rich Low_complexity Low_complexity 1 31 0 2 1016 22 35 0 0 chr12 56593176 56593205 -64664325 + GC_rich Low_complexity Low_complexity 1 29 0 2 1016 441 267 8 25 chr12 56595192 56595311 -64662219 - B1F SINE Alu -9 140 24 2 1016 204 323 62 31 chr12 56595444 56595540 -64661990 - MIRb SINE MIR -56 212 114 2 1016 210 195 73 0 chr12 56595686 56595727 -64661803 + PB1 SINE Alu 76 119 -8 2 1016 921 198 126 0 chr12 56595823 56596005 -64661525 + B3 SINE B2 2 206 -10 2 1016 360 284 30 126 chr12 56596634 56596824 -64660706 - ID_B1 SINE B4 -106 186 3 2 1016 516 272 19 30 chr12 56597761 56597921 -64659609 + ID_B1 SINE B4 82 241 -51 2 1016 614 120 80 0 chr12 56597983 56598083 -64659447 + B1_Mus1 SINE Alu 34 141 -7 2 1016 239 95 48 0 chr12 56598086 56598128 -64659402 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 2 1016 483 311 0 21 chr12 56598132 56598319 -64659211 + Lx7 LINE L1 7126 7308 -388 2 1016 766 234 53 38 chr12 56598344 56598553 -64658977 - B3 SINE B2 -3 213 2 2 1016 254 73 24 0 chr12 56598562 56598603 -64658927 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2 1016 239 79 26 0 chr12 56599079 56599117 -64658413 + (AGGGGG)n Simple_repeat Simple_repeat 3 41 0 2 1016 453 190 2 22 chr12 56600497 56600599 -64656931 - PB1D10 SINE Alu -14 103 9 2 1016 189 0 0 0 chr12 56600630 56600651 -64656879 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1016 1109 128 0 23 chr12 56600667 56600826 -64656704 + B2_Mm2 SINE B2 2 158 -37 2 1016 315 71 0 0 chr12 56600826 56600868 -64656662 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 1016 1109 128 0 23 chr12 56600868 56600884 -64656646 + B2_Mm2 SINE B2 159 173 -22 2 1016 632 256 7 21 chr12 56600976 56601116 -64656414 - B1F SINE Alu 0 149 12 2 1016 327 255 105 11 chr12 56601125 56601220 -64656310 - MIRb SINE MIR -109 159 56 3 1016 459 176 114 88 chr12 56601288 56601427 -64656103 - B1_Mur2 SINE Alu 0 149 5 3 1016 21 0 0 0 chr12 56601447 56601468 -64656062 + AT_rich Low_complexity Low_complexity 1 21 0 3 1016 793 162 0 53 chr12 56601505 56601655 -64655875 - B1_Mus2 SINE Alu 0 147 6 3 1016 553 331 6 18 chr12 56601701 56601870 -64655660 + ID_B1 SINE B4 49 215 -9 3 1016 1048 177 78 0 chr12 56602683 56602875 -64654655 + URR1A DNA MER1_type 1 207 -19 3 1016 1102 213 0 48 chr12 56603037 56603070 -64654460 + B3 SINE B2 1 28 -188 3 1016 2043 109 54 17 chr12 56603070 56603368 -64654162 - RLTR27 LTR ERVK 0 309 1 3 1016 1102 213 0 48 chr12 56603368 56603561 -64653969 + B3 SINE B2 29 216 0 3 1016 335 307 0 0 chr12 56603630 56603705 -64653825 + ID4 SINE ID 9 83 0 3 1016 297 348 11 0 chr12 56603705 56603719 -64653811 + ID_B1 SINE B4 9 98 -126 3 1016 274 288 144 0 chr12 56603721 56603867 -64653663 - RMER5 LTR ERV1 -66 468 302 3 1016 268 232 48 24 chr12 56603959 56604043 -64653487 + BC1_Mm scRNA scRNA 7 92 -60 3 1016 1937 154 19 28 chr12 56604123 56604484 -64653046 - RMER10A LTR ERVL 0 442 85 3 1016 427 260 40 0 chr12 56604600 56604700 -64652830 - PB1D10 SINE Alu -9 108 5 3 1016 324 120 0 0 chr12 56605503 56605553 -64651977 + (TTTTC)n Simple_repeat Simple_repeat 2 51 0 3 1016 211 297 11 42 chr12 56605666 56605761 -64651769 + G-rich Low_complexity Low_complexity 4 95 0 3 1016 497 246 7 69 chr12 56606008 56606023 -64651507 - ID_B1 SINE B4 0 224 90 3 1016 835 133 8 8 chr12 56606023 56606152 -64651378 - B1_Mur3 SINE Alu -12 137 9 3 1016 222 118 0 0 chr12 56607206 56607240 -64650290 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 3 1016 540 164 88 35 chr12 56607241 56607355 -64650175 - PB1D9 SINE Alu 0 120 1 3 1016 213 211 0 0 chr12 56607374 56607412 -64650118 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1016 222 105 0 0 chr12 56607817 56607855 -64649675 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1016 984 185 17 6 chr12 56607885 56608064 -64649466 - B3A SINE B2 -16 182 2 3 1016 271 89 18 18 chr12 56608073 56608130 -64649400 + (CAAAAA)n Simple_repeat Simple_repeat 3 59 0 3 1016 275 273 196 18 chr12 56608131 56608243 -64649287 - B1F1 SINE Alu -16 133 2 3 1016 345 281 55 0 chr12 56608428 56608556 -64648974 + C-rich Low_complexity Low_complexity 3 137 0 3 1016 282 301 136 72 chr12 56608569 56608805 -64648725 + MLT1D LTR MaLR 32 282 -223 3 1016 1697 149 63 108 chr12 56609188 56609270 -64648260 + RLTR14 LTR ERV1 3 75 -307 3 1016 1236 54 0 0 chr12 56609270 56609417 -64648113 + B1_Mm SINE Alu 1 147 0 3 1016 1697 149 63 108 chr12 56609417 56609732 -64647798 + RLTR14 LTR ERV1 76 382 0 3 1016 248 350 84 37 chr12 56610084 56610191 -64647339 + PB1D10 SINE Alu 1 112 -5 3 1016 2976 27 0 81 chr12 56610597 56610994 -64646536 - RLTR10B2 LTR ERVK 0 365 1 3 1016 345 358 0 12 chr12 56611033 56611194 -64646336 - L1MD2 LINE L1 -363 5996 5838 3 1016 437 163 109 0 chr12 56611220 56611308 -64646222 - MTC LTR MaLR 0 421 324 3 1016 345 87 75 17 chr12 56611308 56611373 -64646157 - ORR1B1 LTR MaLR 0 394 321 3 1016 898 62 0 0 chr12 56611381 56611494 -64646036 - B2_Mm2 SINE B2 -82 113 1 3 1016 188 152 30 0 chr12 56611649 56611682 -64645848 - L2a LINE L2 0 3426 3393 3 1016 521 76 0 12 chr12 56611682 56611762 -64645768 + (TTTTC)n Simple_repeat Simple_repeat 2 80 0 3 1016 1090 100 0 7 chr12 56611772 56611923 -64645607 - B1_Mur4 SINE Alu 0 150 1 3 1016 237 250 0 0 chr12 56612437 56612513 -64645017 + (CAT)n Simple_repeat Simple_repeat 3 78 0 3 1016 616 261 14 17 chr12 56612542 56612782 -64644748 + MTE2b LTR MaLR 1 281 -98 3 1016 757 265 21 16 chr12 56612866 56613054 -64644476 - B3A SINE B2 -5 193 5 3 1016 536 230 272 24 chr12 56613162 56613331 -64644199 + B4 SINE B4 82 292 0 3 1016 378 0 0 0 chr12 56613382 56613424 -64644106 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1016 670 197 44 0 chr12 56613838 56613975 -64643555 + RSINE1 SINE B4 16 158 -7 3 1016 428 241 56 4 chr12 56613976 56614095 -64643435 + B1F SINE Alu 28 148 -1 3 1016 312 236 37 77 chr12 56614235 56614339 -64643191 - PB1D10 SINE Alu -22 127 16 3 1016 577 150 161 23 chr12 56614389 56614519 -64643011 + B1_Mur1 SINE Alu 1 148 -1 3 1016 314 302 47 0 chr12 56614559 56614645 -64642885 + B4A SINE B4 15 104 -188 3 1016 256 347 30 10 chr12 56614645 56614658 -64642872 + B3A SINE B2 15 115 -83 3 1016 642 60 0 0 chr12 56615370 56615453 -64642077 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 3 1016 392 130 14 0 chr12 56615453 56615522 -64642008 + (TCCCC)n Simple_repeat Simple_repeat 3 72 0 3 1016 1221 63 0 0 chr12 56615522 56615681 -64641849 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 3 1016 312 186 9 29 chr12 56615714 56615819 -64641711 + CT-rich Low_complexity Low_complexity 2 104 0 3 1016 1440 51 62 0 chr12 56615984 56616162 -64641368 + B2_Mm2 SINE B2 1 189 -6 3 1016 3531 106 56 34 chr12 56616182 56616737 -64640793 + RMER2 LTR ERV1 1 567 0 3 1016 236 344 0 0 chr12 56616743 56616807 -64640723 - B2_Mm2 SINE B2 -124 71 8 3 1016 315 220 2 4 chr12 56616923 56616988 -64640542 - RSINE1 SINE B4 -96 69 5 3 1016 1283 27 0 0 chr12 56617058 56617205 -64640325 + B1_Mus1 SINE Alu 2 148 0 3 1016 195 162 0 0 chr12 56617228 56617265 -64640265 + GA-rich Low_complexity Low_complexity 3 39 0 3 1016 398 299 32 102 chr12 56617265 56617305 -64640225 + B4A SINE B4 2 41 -251 3 1016 1650 213 44 11 chr12 56617305 56617666 -64639864 + ORR1D1 LTR MaLR 1 373 -1 3 1016 398 299 32 102 chr12 56617666 56617811 -64639719 + B4A SINE B4 42 174 -118 3 1016 234 0 0 0 chr12 56617928 56617954 -64639576 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1016 1052 80 0 7 chr12 56618090 56618229 -64639301 - B1_Mus2 SINE Alu -1 146 9 3 1016 230 284 36 29 chr12 56618130 56618268 -64639262 - ORR1B1-int LTR MaLR -755 754 616 3 1016 325 350 107 0 chr12 56618338 56618441 -64639089 - L1M5 LINE L1 -625 5499 5386 3 1016 231 88 0 0 chr12 56618452 56618486 -64639044 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1016 317 287 59 0 chr12 56619691 56619792 -64637738 - RMER15 LTR ERVL -47 528 422 3 1016 23 33 0 0 chr12 56620066 56620096 -64637434 + AT_rich Low_complexity Low_complexity 1 30 0 3 1016 460 257 9 9 chr12 56620206 56620312 -64637218 - B3 SINE B2 0 216 111 3 1016 388 198 54 45 chr12 56620300 56620411 -64637119 - B1F SINE Alu -36 113 2 3 1016 962 283 147 37 chr12 56620829 56620927 -64636603 + MER82 DNA MER2_type 9 113 -540 3 1016 1886 165 172 8 chr12 56620927 56621323 -64636207 + RMER6B LTR ERVK 1 461 0 3 1016 962 283 147 37 chr12 56621323 56621661 -64635869 + MER82 DNA MER2_type 114 493 -160 3 1016 555 275 152 49 chr12 56621861 56622125 -64635405 - B4A SINE B4 -1 291 1 3 1016 241 284 0 0 chr12 56622461 56622528 -64635002 + L1MC LINE L1 3824 3890 -2256 3 1016 705 161 0 35 chr12 56622759 56622875 -64634655 - B1_Mur1 SINE Alu -36 113 2 3 1016 262 258 103 0 chr12 56622963 56623060 -64634470 - PB1D10 SINE Alu -8 109 3 3 15 29 0 0 0 chr12 56623089 56623118 -64634412 + AT_rich Low_complexity Low_complexity 1 29 0 3 1017 189 94 0 0 chr12 56623161 56623193 -64634337 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1017 396 327 79 56 chr12 56623356 56623570 -64633960 + MER77 LTR ERVL 387 605 -2 3 1017 200 151 81 14 chr12 56623635 56623709 -64633821 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 1017 288 220 27 3 chr12 56623817 56623903 -64633627 - L1M LINE L1 -843 5397 5305 3 1017 849 156 20 26 chr12 56626287 56626438 -64631092 - B1_Mur4 SINE Alu 0 150 1 3 1017 1008 149 223 0 chr12 56626517 56626692 -64630838 + B3 SINE B2 2 215 -1 3 1017 211 167 188 0 chr12 56626756 56626804 -64630726 - PB1D9 SINE Alu -7 113 57 3 1017 537 216 167 22 chr12 56626975 56627155 -64630375 + B3 SINE B2 1 206 -10 3 1017 1310 175 0 0 chr12 56627332 56627543 -64629987 - B3 SINE B2 -4 212 2 3 1017 395 264 114 12 chr12 56627547 56627720 -64629810 - B3A SINE B2 0 198 27 3 1017 254 29 29 0 chr12 56627721 56627756 -64629774 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 3 1017 201 74 0 0 chr12 56628100 56628127 -64629403 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1017 372 43 0 0 chr12 56628692 56628738 -64628792 + (CAT)n Simple_repeat Simple_repeat 1 46 0 3 1017 1087 230 5 28 chr12 56629154 56629369 -64628161 - B3 SINE B2 -1 215 6 3 1017 934 110 7 52 chr12 56629376 56629530 -64628000 - B1_Mur1 SINE Alu -2 147 1 3 1017 287 186 184 10 chr12 56629960 56630058 -64627472 - PB1D10 SINE Alu -1 116 2 3 1017 211 262 0 0 chr12 56630102 56630163 -64627367 + (TCTCTG)n Simple_repeat Simple_repeat 6 66 0 3 1017 180 0 0 0 chr12 56630251 56630271 -64627259 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1017 371 327 113 19 chr12 56630271 56630430 -64627100 - B4 SINE B4 -69 223 50 3 1017 791 193 0 14 chr12 56630491 56630638 -64626892 - B1_Mur4 SINE Alu -5 145 1 3 1017 1072 109 59 16 chr12 56630640 56630826 -64626704 - B2_Mm2 SINE B2 0 195 2 3 1017 540 299 28 65 chr12 56630826 56631041 -64626489 - MTE2b LTR MaLR -2 377 171 3 1017 314 282 228 21 chr12 56631133 56631278 -64626252 - FAM SINE Alu 0 311 137 3 1017 584 234 39 0 chr12 56631154 56631282 -64626248 - ID_B1 SINE B4 -13 211 79 4 1017 1144 83 7 0 chr12 56631314 56631459 -64626071 - B1_Mus2 SINE Alu 0 147 2 4 1017 1146 76 14 0 chr12 56631511 56631655 -64625875 - B1_Mus2 SINE Alu 0 147 2 4 1017 655 111 0 0 chr12 56631655 56631745 -64625785 - 4.5SRNA scRNA scRNA -4 90 1 4 1017 402 268 0 30 chr12 56631875 56631975 -64625555 - PB1D10 SINE Alu 0 117 21 4 1017 238 307 13 13 chr12 56632173 56632249 -64625281 - L1MC LINE L1 -2283 5599 5524 4 1017 2297 124 66 0 chr12 56632249 56632597 -64624933 + ORR1B1 LTR MaLR 1 371 -23 4 1017 726 282 46 11 chr12 56632601 56632863 -64624667 - L1MC LINE L1 -2356 5526 5256 4 1017 311 211 14 14 chr12 56632865 56632937 -64624593 - PB1D10 SINE Alu -15 102 31 4 1017 478 300 0 0 chr12 56633266 56633376 -64624154 - ID_B1 SINE B4 -21 203 94 4 1017 245 211 35 0 chr12 56633393 56633450 -64624080 + CT-rich Low_complexity Low_complexity 5 63 0 4 1017 2519 128 44 17 chr12 56633648 56633751 -64623779 + MTC LTR MaLR 5 107 -314 4 1017 1039 117 14 0 chr12 56633751 56633896 -64623634 - B1_Mus1 SINE Alu -1 147 1 4 1017 2519 128 44 17 chr12 56633896 56634198 -64623332 + MTC LTR MaLR 108 421 0 4 1017 278 226 158 21 chr12 56634413 56634508 -64623022 + PB1D10 SINE Alu 8 115 -2 4 1017 306 0 0 0 chr12 56634645 56634679 -64622851 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1017 743 272 33 24 chr12 56634723 56634934 -64622596 - MLT1A0 LTR MaLR -114 251 39 4 1017 1114 211 5 24 chr12 56634935 56635144 -64622386 + B3 SINE B2 1 205 -11 4 1017 270 0 0 0 chr12 56635838 56635868 -64621662 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1017 305 221 0 42 chr12 56635874 56635945 -64621585 + B1F SINE Alu 82 149 0 4 1017 228 296 37 84 chr12 56635968 56636075 -64621455 + B3A SINE B2 19 120 -78 4 1017 474 320 13 45 chr12 56635995 56636152 -64621378 + B4A SINE B4 49 200 -92 4 1017 263 269 0 15 chr12 56636152 56636220 -64621310 + ID4_ SINE ID 4 70 -13 4 1017 414 0 0 0 chr12 56637527 56637573 -64619957 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4 1017 336 19 18 36 chr12 56639353 56639408 -64618122 + (CACAC)n Simple_repeat Simple_repeat 1 54 0 4 1017 964 81 24 46 chr12 56639431 56639856 -64617674 + (CA)n Simple_repeat Simple_repeat 1 415 0 4 1017 796 189 26 19 chr12 56640196 56640352 -64617178 + ID_B1 SINE B4 51 207 -17 4 1017 360 239 352 42 chr12 56640393 56640629 -64616901 - RMER20B LTR ERVK -25 602 294 4 1017 727 269 64 8 chr12 56640898 56641149 -64616381 - L1M2 LINE L1 -515 5776 5512 4 1017 875 191 122 0 chr12 56641217 56641406 -64616124 - B3 SINE B2 -4 212 1 4 1017 439 222 109 80 chr12 56642074 56642094 -64615436 - B1_Mur4 SINE Alu 0 150 121 4 1017 1162 82 0 13 chr12 56642094 56642243 -64615287 - B1_Mus1 SINE Alu 0 148 2 4 1017 468 224 105 77 chr12 56642243 56642365 -64615165 - PB1D9 SINE Alu -30 120 3 4 1017 410 223 88 32 chr12 56642628 56642753 -64614777 - B3A SINE B2 -1 215 84 4 1017 523 273 0 0 chr12 56642774 56642873 -64614657 - RSINE1 SINE B4 0 165 67 4 1017 858 168 0 15 chr12 56643147 56643297 -64614233 - B1_Mur4 SINE Alu -1 149 1 4 1017 359 208 13 0 chr12 56643304 56643381 -64614149 - PB1D10 SINE Alu 0 117 40 4 1017 601 232 81 20 chr12 56643414 56643612 -64613918 - B3 SINE B2 -5 211 2 4 1017 509 343 80 6 chr12 56643653 56643829 -64613701 - ID_B1 SINE B4 -2 222 34 4 1017 402 21 0 0 chr12 56645058 56645105 -64612425 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1017 804 175 146 6 chr12 56645195 56645310 -64612220 - Lx4B LINE L1 -764 6294 6176 4 1017 249 33 0 0 chr12 56645310 56645340 -64612190 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 4 1017 804 175 146 6 chr12 56645340 56645402 -64612128 - Lx4B LINE L1 -883 6175 6092 4 1017 4712 149 47 7 chr12 56645399 56645953 -64611577 + L1_Mur2 LINE L1 1492 2049 -3828 4 1017 279 0 0 0 chr12 56645953 56645984 -64611546 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1017 4712 149 47 7 chr12 56645984 56646320 -64611210 + L1_Mur2 LINE L1 2050 2418 -3459 4 1017 1368 94 0 11 chr12 56646335 56646518 -64611012 - B2_Mm2 SINE B2 -14 181 1 4 1017 2101 263 41 57 chr12 56646657 56647287 -64610243 + MER21B LTR ERV1 15 634 -229 4 1017 338 291 0 0 chr12 56647884 56647963 -64609567 + ID4_ SINE ID 3 81 -2 4 1017 360 0 0 0 chr12 56648159 56648199 -64609331 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1017 725 206 8 42 chr12 56648485 56648679 -64608851 - ORR1D2 LTR MaLR 0 370 184 4 1017 1660 199 30 56 chr12 56648679 56649052 -64608478 - ORR1D1 LTR MaLR -9 365 3 4 1017 471 222 29 3 chr12 56649079 56649191 -64608339 + PB1D10 SINE Alu 1 125 -2 4 1017 533 303 20 34 chr12 56649204 56649307 -64608223 + B1F SINE Alu 1 106 -43 4 1017 4260 56 10 6 chr12 56649307 56649824 -64607706 - MURVY-LTR LTR ERV1 0 519 1 4 1017 533 303 20 34 chr12 56649824 56649867 -64607663 + B1F SINE Alu 107 145 -4 4 1017 303 49 0 0 chr12 56649952 56649993 -64607537 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1017 1371 95 0 11 chr12 56650000 56650191 -64607339 + B2_Mm2 SINE B2 2 190 -5 4 1017 405 0 0 0 chr12 56651006 56651051 -64606479 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1017 221 286 0 67 chr12 56651063 56651153 -64606377 + ID4 SINE ID 2 85 -67 4 1017 458 288 20 46 chr12 56651402 56651555 -64605975 + B1F SINE Alu 1 149 0 4 1017 387 0 0 0 chr12 56651627 56651670 -64605860 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1017 342 0 0 0 chr12 56651670 56651707 -64605823 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1017 378 0 0 0 chr12 56651707 56651748 -64605782 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1017 312 91 0 0 chr12 56651784 56651828 -64605702 + (TCC)n Simple_repeat Simple_repeat 3 46 0 4 1017 1010 110 0 40 chr12 56652593 56652745 -64604785 - B1_Mur4 SINE Alu -2 148 3 4 1017 360 0 0 0 chr12 56652745 56652785 -64604745 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 4 1017 2493 84 136 5 chr12 56652815 56653198 -64604332 - RLTR44E LTR ERVK -19 433 1 4 1017 16205 89 121 18 chr12 56653198 56655748 -64601782 - RLTR44-int LTR ERVK 0 2812 1 4 1017 2495 78 136 25 chr12 56655756 56656152 -64601378 - RLTR44E LTR ERVK -12 440 1 4 1017 415 283 0 62 chr12 56656152 56656278 -64601252 - RSINE1 SINE B4 -47 118 1 4 1017 297 327 49 10 chr12 56656278 56656378 -64601152 - ID_B1 SINE B4 -40 184 81 4 1017 4471 52 0 0 chr12 56656385 56656927 -64600603 - L1Md_F2 LINE L1 0 6582 6041 4 1017 1339 122 102 5 chr12 56657015 56657221 -64600309 + URR1A DNA MER1_type 1 226 0 4 1017 387 0 0 0 chr12 56657242 56657285 -64600245 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1017 403 292 106 23 chr12 56657314 56657527 -64600003 - B4 SINE B4 -18 274 68 4 1017 213 345 0 0 chr12 56657797 56657855 -64599675 - B4A SINE B4 -234 58 1 4 1017 399 292 35 0 chr12 56657857 56657970 -64599560 - PB1D10 SINE Alu 0 117 1 4 1017 245 299 26 0 chr12 56658261 56658338 -64599192 - L1MB4 LINE L1 -2570 4177 4099 4 1017 294 277 54 0 chr12 56658370 56658482 -64599048 - L1MB4 LINE L1 -5137 1612 1495 4 1017 502 258 83 8 chr12 56658482 56658615 -64598915 + ID_B1 SINE B4 82 224 0 4 1017 515 321 14 29 chr12 56658614 56658752 -64598778 + ID_B1 SINE B4 80 215 -9 4 1017 423 0 0 0 chr12 56658896 56658943 -64598587 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1017 527 271 0 17 chr12 56658961 56659081 -64598449 - RSINE1 SINE B4 -45 120 3 4 1017 518 278 136 53 chr12 56659303 56659679 -64597851 - L1MB4 LINE L1 -6172 435 29 4 1017 368 329 95 7 chr12 56660077 56660224 -64597306 + RSINE1 SINE B4 4 163 -2 4 1017 200 189 0 0 chr12 56660226 56660263 -64597267 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1017 358 204 60 88 chr12 56660299 56660413 -64597117 + PB1D9 SINE Alu 1 149 0 4 1017 299 323 128 89 chr12 56660480 56660738 -64596792 + B4 SINE B4 9 276 -16 4 1017 250 324 186 0 chr12 56662446 56662548 -64594982 + PB1 SINE Alu 7 127 0 4 1017 312 176 0 0 chr12 56662569 56662637 -64594893 + Lx2B LINE L1 6933 7000 0 4 1017 549 211 55 35 chr12 56662690 56662841 -64594689 + B1_Mus1 SINE Alu 1 141 -9 4 1017 308 288 12 0 chr12 56662875 56662955 -64594575 - PB1D10 SINE Alu -34 83 3 4 1017 1619 192 248 12 chr12 56663143 56663529 -64594001 + MT2A LTR ERVL 1 489 -44 4 1017 261 0 0 0 chr12 56663529 56663558 -64593972 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1017 1619 192 248 12 chr12 56663558 56663602 -64593928 + MT2A LTR ERVL 490 533 0 4 1017 247 208 19 0 chr12 56663639 56663692 -64593838 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1017 938 231 97 50 chr12 56663692 56663970 -64593560 - B4A SINE B4 0 292 2 4 1017 1616 47 5 0 chr12 56663989 56664180 -64593350 - B2_Mm1a SINE B2 0 193 2 4 1017 1512 63 0 5 chr12 56665211 56665403 -64592127 + B2_Mm2 SINE B2 3 193 -2 4 1017 384 274 83 10 chr12 56665429 56665525 -64592005 + RSINE1 SINE B4 32 134 -31 4 1017 764 217 84 11 chr12 56665675 56665866 -64591664 - B3 SINE B2 -10 206 2 4 1017 540 189 99 0 chr12 56665990 56666101 -64591429 + B1_Mur3 SINE Alu 1 122 -27 4 1017 23 33 0 0 chr12 56668794 56668824 -64588706 + AT_rich Low_complexity Low_complexity 1 30 0 4 1017 382 294 9 9 chr12 56668861 56668971 -64588559 - PB1D10 SINE Alu -7 110 1 4 1017 555 321 148 0 chr12 56669510 56669821 -64587709 - MLT1A0 LTR MaLR -4 361 5 4 1017 720 249 16 37 chr12 56669942 56670130 -64587400 - ID_B1 SINE B4 -2 222 39 4 1017 340 309 95 0 chr12 56670155 56670281 -64587249 - ID_B1 SINE B4 -4 220 83 4 1017 238 312 30 61 chr12 56671045 56671144 -64586386 - RSINE1 SINE B4 -2 163 68 4 1017 404 281 0 26 chr12 56671294 56671411 -64586119 - PB1D10 SINE Alu -1 116 3 4 1017 4390 123 106 1 chr12 56671539 56672206 -64585324 + RMER19A LTR ERVK 1 737 0 4 1017 482 0 17 0 chr12 56672410 56672468 -64585062 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1017 325 247 160 11 chr12 56672593 56672687 -64584843 - PB1D10 SINE Alu -9 108 1 5 1017 773 247 18 3 chr12 56674193 56674404 -64583126 - B3A SINE B2 -2 214 3 5 1017 668 160 117 8 chr12 56674457 56674577 -64582953 - B1_Mur3 SINE Alu -16 133 1 5 1017 240 276 25 50 chr12 56674603 56674683 -64582847 - PB1 SINE Alu -18 109 32 5 1017 293 0 0 26 chr12 56674714 56674752 -64582778 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1017 242 246 43 14 chr12 56674799 56674869 -64582661 - ID4_ SINE ID -7 76 5 5 1017 311 288 108 0 chr12 56675475 56675586 -64581944 - Lx8 LINE L1 -282 7191 7069 5 1017 394 237 92 8 chr12 56675602 56675721 -64581809 - Lx8 LINE L1 -454 7019 6891 5 1017 350 278 0 0 chr12 56675770 56675842 -64581688 - Lx8 LINE L1 -572 6901 6830 5 1017 2348 130 37 11 chr12 56675981 56676363 -64581167 - Lx2B LINE L1 -433 6567 6176 5 1017 1293 84 0 0 chr12 56676343 56676521 -64581009 - L1_Mur2 LINE L1 -439 5438 5261 5 1017 3784 112 66 7 chr12 56676528 56677121 -64580409 + L1_Mur2 LINE L1 4634 5261 -616 5 1017 392 241 123 36 chr12 56677126 56677264 -64580266 - B4A SINE B4 -62 230 81 5 1017 700 235 45 60 chr12 56677276 56677475 -64580055 - B3A SINE B2 -1 197 2 5 1017 683 223 14 0 chr12 56677543 56677682 -64579848 - B1_Mur2 SINE Alu -7 142 2 5 1017 198 0 0 0 chr12 56678092 56678114 -64579416 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 5 1017 597 225 57 14 chr12 56678814 56678954 -64578576 - B1_Mur2 SINE Alu -1 148 3 5 1017 402 21 0 0 chr12 56678985 56679032 -64578498 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1017 539 239 60 23 chr12 56679032 56679165 -64578365 - B1F SINE Alu -10 139 2 5 1017 271 206 27 27 chr12 56679564 56679639 -64577891 - AmnSINE1 SINE SINE -175 400 326 5 1017 223 355 7 48 chr12 56679682 56679827 -64577703 + L3 LINE CR1 3228 3366 -1123 5 1017 405 190 0 0 chr12 56680618 56680718 -64576812 + GA-rich Low_complexity Low_complexity 2 101 0 5 1017 428 218 159 8 chr12 56680902 56681060 -64576470 + B3A SINE B2 4 187 -29 5 1017 531 0 0 0 chr12 56681061 56681120 -64576410 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1017 333 62 0 0 chr12 56681120 56681168 -64576362 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1017 189 147 0 0 chr12 56681204 56681238 -64576292 + (TTG)n Simple_repeat Simple_repeat 3 36 0 5 1017 238 261 47 132 chr12 56681265 56681371 -64576159 - RSINE1 SINE B4 -12 153 57 5 1017 902 156 0 12 chr12 56681453 56681622 -64575908 + CT-rich Low_complexity Low_complexity 3 169 0 5 1017 902 107 27 0 chr12 56681626 56681789 -64575741 - B2_Mm2 SINE B2 -34 182 1 5 1017 23 0 0 0 chr12 56681798 56681821 -64575709 + AT_rich Low_complexity Low_complexity 1 23 0 5 1017 1011 249 41 49 chr12 56682213 56682601 -64574929 + Lx7 LINE L1 843 1227 -6501 5 1017 1324 67 0 43 chr12 56682601 56682789 -64574741 + B2_Mm2 SINE B2 2 181 -14 5 1017 364 88 316 9 chr12 56682821 56682935 -64574595 + B2_Mm2 SINE B2 47 195 0 5 1017 12387 235 43 127 chr12 56682950 56685574 -64571956 + Lx7 LINE L1 1230 3825 -2052 5 1017 3240 50 7 22 chr12 56685574 56685987 -64571543 + MTB_Mm LTR MaLR 1 407 0 5 1017 12387 235 43 127 chr12 56685987 56686472 -64571058 + Lx7 LINE L1 3826 3880 -1997 5 1017 912 174 29 0 chr12 56686472 56686644 -64570886 + Lx4B LINE L1 6865 7041 -17 5 1017 12387 235 43 127 chr12 56686644 56687392 -64570138 + Lx7 LINE L1 3881 4621 -1256 5 1017 345 24 0 0 chr12 56687392 56687434 -64570096 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 5 1017 12387 235 43 127 chr12 56687434 56688035 -64569495 + Lx7 LINE L1 4622 5224 -653 5 1017 2793 90 22 10 chr12 56688035 56688439 -64569091 + RLTR9E LTR ERVK 1 409 0 5 1017 12387 224 23 62 chr12 56688439 56689152 -64568378 + Lx7 LINE L1 5225 5981 -1715 5 1017 1173 241 120 17 chr12 56689147 56689506 -64568024 + Lx7 LINE L1 6964 7359 -337 5 1017 252 0 0 0 chr12 56689525 56689553 -64567977 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 1017 355 275 28 78 chr12 56690106 56690248 -64567282 + RSINE1 SINE B4 16 150 -15 5 1017 288 143 0 0 chr12 56690248 56690304 -64567226 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1017 180 0 0 0 chr12 56690304 56690324 -64567206 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1017 400 225 0 0 chr12 56690396 56690476 -64567054 - ID4_ SINE ID 0 83 4 5 1017 621 243 43 0 chr12 56690503 56690643 -64566887 + RSINE1 SINE B4 1 146 -19 5 1017 183 80 0 0 chr12 56690660 56690685 -64566845 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1017 292 279 0 0 chr12 56691067 56691146 -64566384 - ID_B1 SINE B4 -5 219 141 5 1017 323 214 203 16 chr12 56691571 56691699 -64565831 + Tigger6b DNA MER2_type 233 384 -1213 5 1017 361 247 133 81 chr12 56691790 56692001 -64565529 + Tigger6b DNA MER2_type 1037 1258 -339 5 1017 189 0 0 0 chr12 56692079 56692100 -64565430 + (CG)n Simple_repeat Simple_repeat 1 21 0 5 1017 336 102 0 0 chr12 56692100 56692148 -64565382 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1017 258 288 16 78 chr12 56692388 56692516 -64565014 + Tigger6b DNA MER2_type 1392 1511 -86 5 1017 552 204 85 112 chr12 56692648 56692836 -64564694 + B3A SINE B2 16 198 0 5 1017 2481 112 38 63 chr12 56692845 56693292 -64564238 + Lx2B LINE L1 6564 6999 -1 5 1017 390 244 0 0 chr12 56693351 56693429 -64564101 + RSINE1 SINE B4 59 136 -29 5 1017 1290 14 0 13 chr12 56693468 56693617 -64563913 + B1_Mm SINE Alu 1 147 0 5 1017 188 35 35 0 chr12 56693635 56693664 -64563866 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5 1017 23 0 0 0 chr12 56693695 56693718 -64563812 + AT_rich Low_complexity Low_complexity 1 23 0 5 1017 852 261 113 50 chr12 56693812 56694291 -64563239 - RLTR12B LTR ERVK 0 528 1 5 1017 659 209 80 17 chr12 56694292 56694467 -64563063 - B3A SINE B2 0 198 13 5 1017 762 43 0 0 chr12 56694963 56695057 -64562473 + (CCAA)n Simple_repeat Simple_repeat 2 95 0 5 1017 717 87 0 0 chr12 56696515 56696630 -64560900 + (GCTG)n Simple_repeat Simple_repeat 2 116 0 5 1017 487 270 93 12 chr12 56696631 56696821 -64560709 + B4A SINE B4 106 292 0 5 1017 939 266 148 22 chr12 56696903 56697212 -64560318 - MTD LTR MaLR -17 402 44 5 1017 2784 112 5 0 chr12 56697212 56697604 -64559926 + ORR1B1 LTR MaLR 1 394 0 5 1017 939 266 148 22 chr12 56697604 56697651 -64559879 - MTD LTR MaLR -376 43 1 5 1017 1294 40 106 22 chr12 56697930 56698109 -64559421 - B2_Mm2 SINE B2 0 195 2 5 1017 378 0 0 0 chr12 56698346 56698388 -64559142 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1017 21 57 0 0 chr12 56700279 56700314 -64557216 + GC_rich Low_complexity Low_complexity 1 35 0 5 1017 186 43 0 0 chr12 56700352 56700375 -64557155 + (CCCGG)n Simple_repeat Simple_repeat 5 27 0 5 1017 29 70 0 0 chr12 56700637 56700694 -64556836 + GC_rich Low_complexity Low_complexity 1 57 0 5 1017 228 35 0 0 chr12 56702313 56702342 -64555188 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 5 1017 184 0 97 0 chr12 56703310 56703341 -64554189 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1017 21 36 0 0 chr12 56703892 56703920 -64553610 + AT_rich Low_complexity Low_complexity 1 28 0 5 1017 293 229 0 0 chr12 56704665 56704726 -64552804 + ID4 SINE ID 23 83 0 5 1017 251 234 225 8 chr12 56706834 56706963 -64550567 - MER3 DNA MER1_type -23 186 30 5 1017 27 0 0 0 chr12 56707965 56707992 -64549538 + AT_rich Low_complexity Low_complexity 1 27 0 5 1017 216 0 0 0 chr12 56708002 56708026 -64549504 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 5 1017 601 248 7 14 chr12 56708048 56708187 -64549343 - RSINE1 SINE B4 -17 148 11 5 1017 201 262 76 15 chr12 56708227 56708293 -64549237 + MIRb SINE MIR 129 198 -70 5 1017 210 302 120 52 chr12 56708749 56708890 -64548640 - MIRb SINE MIR -98 170 23 5 1017 41 58 0 0 chr12 56709898 56709967 -64547563 + AT_rich Low_complexity Low_complexity 1 69 0 5 1017 202 235 0 19 chr12 56710020 56710072 -64547458 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 5 1017 219 69 0 0 chr12 56710478 56710507 -64547023 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1017 468 51 0 0 chr12 56710910 56710969 -64546561 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1017 288 175 4 0 chr12 56711314 56711373 -64546157 + PB1D10 SINE Alu 64 140 -9 5 1017 420 99 0 0 chr12 56717115 56717186 -64540344 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1017 1474 42 15 31 chr12 56717929 56717964 -64539566 - B2_Mm1a SINE B2 0 193 161 5 1017 276 77 0 0 chr12 56717964 56718003 -64539527 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 1017 1474 42 15 31 chr12 56718003 56718163 -64539367 - B2_Mm1a SINE B2 -33 160 1 5 1017 407 276 40 10 chr12 56718293 56718392 -64539138 + B1F1 SINE Alu 2 103 -46 5 1017 765 209 0 20 chr12 56718665 56718816 -64538714 - B1_Mur3 SINE Alu 0 149 2 5 1017 227 330 43 11 chr12 56719655 56719747 -64537783 - ID_B1 SINE B4 -39 185 91 5 1017 193 146 42 0 chr12 56719850 56719898 -64537632 + CT-rich Low_complexity Low_complexity 2 51 0 5 1017 333 209 61 35 chr12 56720207 56720321 -64537209 - PB1D10 SINE Alu 0 117 1 5 1017 1109 82 0 39 chr12 56720573 56720726 -64536804 + B1_Mus2 SINE Alu 1 147 0 5 1017 207 0 0 0 chr12 56720726 56720749 -64536781 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1017 289 277 47 107 chr12 56724753 56724882 -64532648 + PB1D10 SINE Alu 1 131 -16 5 1017 273 75 0 0 chr12 56725292 56725332 -64532198 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1017 191 81 54 0 chr12 56725333 56725370 -64532160 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 5 1017 318 317 148 64 chr12 56725548 56725750 -64531780 - B4 SINE B4 -21 271 53 5 1017 709 229 36 0 chr12 56726081 56726221 -64531309 - B1_Mur2 SINE Alu 0 149 5 5 1017 515 225 49 92 chr12 56726510 56726652 -64530878 + B1_Mur1 SINE Alu 4 139 -10 5 1017 207 100 0 0 chr12 56726658 56726688 -64530842 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 5 1017 504 0 0 0 chr12 56726703 56726759 -64530771 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1017 275 280 0 0 chr12 56726760 56726835 -64530695 + GA-rich Low_complexity Low_complexity 1 75 0 5 1017 308 380 0 36 chr12 56727075 56727187 -64530343 - PB1D10 SINE Alu -9 108 1 5 1017 226 176 20 0 chr12 56727341 56727392 -64530138 + A-rich Low_complexity Low_complexity 1 52 0 5 1017 757 229 7 0 chr12 56728166 56728310 -64529220 + B1_Mur1 SINE Alu 5 149 0 5 1017 728 262 69 5 chr12 56728456 56728659 -64528871 - B3 SINE B2 0 216 1 6 1017 382 280 82 33 chr12 56728771 56728893 -64528637 + B3 SINE B2 3 130 -86 6 1017 401 116 0 14 chr12 56728909 56728979 -64528551 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1017 24 0 0 0 chr12 56729268 56729292 -64528238 + AT_rich Low_complexity Low_complexity 1 24 0 6 1017 255 305 37 30 chr12 56729612 56729747 -64527783 - MIRb SINE MIR -8 260 125 6 1017 853 184 0 7 chr12 56730304 56730446 -64527084 + B1_Mur3 SINE Alu 2 142 -7 6 1017 222 320 0 25 chr12 56730716 56730796 -64526734 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 6 1017 433 254 9 17 chr12 56730798 56730914 -64526616 - PB1D10 SINE Alu -2 115 1 6 1017 873 223 210 10 chr12 56731131 56731426 -64526104 + MLT2D LTR ERVL 11 364 -50 6 1017 346 284 29 10 chr12 56731429 56731532 -64525998 + MER2 DNA MER2_type 156 260 -85 6 1017 556 234 51 61 chr12 56733175 56733371 -64524159 - B3A SINE B2 -4 194 1 6 1017 35454 34 1 1 chr12 56733602 56739674 -64517856 + L1Md_T LINE L1 1 5589 -297 6 1017 9005 4 0 0 chr12 56739674 56740670 -64516860 + L1Md_T LINE L1 5590 6585 0 6 1017 327 267 70 64 chr12 56740736 56740892 -64516638 - MIRb SINE MIR -50 218 62 6 1017 291 225 75 0 chr12 56742234 56742314 -64515216 + MTEb LTR MaLR 294 379 0 6 1017 23 54 0 0 chr12 56742663 56742700 -64514830 + AT_rich Low_complexity Low_complexity 1 37 0 6 1017 24 53 0 0 chr12 56742893 56742931 -64514599 + AT_rich Low_complexity Low_complexity 1 38 0 6 1017 458 299 46 23 chr12 56742932 56743062 -64514468 - B1F2 SINE Alu 0 149 17 6 1017 314 276 75 99 chr12 56743062 56743092 -64514438 - ID_B1 SINE B4 -1 222 67 6 1017 305 232 11 0 chr12 56745634 56745729 -64511801 + T-rich Low_complexity Low_complexity 4 99 0 6 1017 571 179 110 8 chr12 56745735 56745853 -64511677 - B1_Mus1 SINE Alu -1 147 18 6 1017 1126 49 14 20 chr12 56746077 56746224 -64511306 - B1_Mus2 SINE Alu 0 147 2 6 1017 267 413 70 0 chr12 56746245 56746458 -64511072 - L3 LINE CR1 -6 4483 4256 6 1017 209 152 21 21 chr12 56746811 56746858 -64510672 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1017 340 247 13 27 chr12 56746866 56746941 -64510589 - RSINE1 SINE B4 -83 82 9 6 1017 314 332 145 18 chr12 56747207 56747428 -64510102 - MIR SINE MIR -12 250 2 6 1017 387 0 0 0 chr12 56747519 56747562 -64509968 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1017 196 304 101 34 chr12 56747574 56747693 -64509837 - L3 LINE CR1 -1178 3311 3185 6 1017 623 309 80 72 chr12 56747769 56748031 -64509499 + MLT1A0 LTR MaLR 19 282 -83 6 1017 3857 97 70 2 chr12 56748207 56748776 -64508754 + Lx2 LINE L1 6390 6997 0 6 1017 235 200 133 111 chr12 56749371 56749461 -64508069 - PB1D7 SINE Alu -22 127 36 6 1017 281 290 93 64 chr12 56749509 56749649 -64507881 + MT2B LTR ERVL 135 278 -323 6 1017 814 83 141 0 chr12 56749554 56749675 -64507855 + B1_Mus1 SINE Alu 10 147 -1 6 1017 553 233 74 7 chr12 56749709 56749886 -64507644 - B3A SINE B2 -3 190 1 6 1017 212 284 129 47 chr12 56750155 56750240 -64507290 - L2a LINE L2 -34 3392 3301 6 1017 411 287 9 0 chr12 56750334 56750442 -64507088 + Lx7 LINE L1 7205 7313 -383 6 1017 328 283 41 24 chr12 56750456 56750626 -64506904 + Lx7 LINE L1 7512 7684 -12 6 1017 29 0 0 0 chr12 56750832 56750861 -64506669 + AT_rich Low_complexity Low_complexity 1 29 0 6 1017 966 92 154 6 chr12 56750865 56751040 -64506490 - Lx3A LINE L1 -17 6964 6764 6 1017 241 270 12 119 chr12 56751042 56751126 -64506404 + RSINE1 SINE B4 85 159 -6 6 1017 4485 58 17 32 chr12 56751354 56751955 -64505575 + L1Md_F2 LINE L1 5979 6570 -12 6 1017 346 215 13 0 chr12 56751969 56752048 -64505482 - L1MB7 LINE L1 -26 6158 6079 6 1017 1287 241 132 3 chr12 56753190 56753366 -64504164 + MTD LTR MaLR 1 190 -229 6 1017 204 40 0 0 chr12 56753366 56753391 -64504139 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1017 1287 241 132 3 chr12 56753391 56753585 -64503945 + MTD LTR MaLR 191 418 -1 6 1017 22 0 0 0 chr12 56753599 56753621 -64503909 + AT_rich Low_complexity Low_complexity 1 22 0 6 1018 22 0 0 0 chr12 56754481 56754503 -64503027 + AT_rich Low_complexity Low_complexity 1 22 0 6 1018 445 312 45 0 chr12 56755269 56755381 -64502149 + RSINE1 SINE B4 47 163 -2 6 1018 404 264 93 13 chr12 56755439 56755589 -64501941 + RSINE1 SINE B4 4 165 0 6 1018 237 189 19 0 chr12 56755633 56755686 -64501844 + L1_Mur1 LINE L1 4532 4585 -1301 6 1018 486 217 119 26 chr12 56755790 56755984 -64501546 + L1MB4 LINE L1 4596 4807 -1333 6 1018 375 299 57 0 chr12 56756041 56756198 -64501332 + L1MB4 LINE L1 4957 5122 -1018 6 1018 472 238 69 8 chr12 56756221 56756393 -64501137 + L1MB4 LINE L1 5227 5419 -764 6 1018 926 268 148 27 chr12 56756575 56757076 -64500454 + L1MB4 LINE L1 5491 6069 -228 6 1018 704 258 72 4 chr12 56757133 56757382 -64500148 + L1MA9 LINE L1 4484 4749 -1391 6 1018 629 270 249 16 chr12 56757413 56757718 -64499812 - MER21B LTR ERV1 -22 841 466 6 1018 1124 124 139 0 chr12 56757739 56757933 -64499597 + URR1A DNA MER1_type 6 226 0 6 1018 535 327 125 68 chr12 56757934 56758128 -64499402 - MTEb LTR MaLR 0 379 175 6 1018 272 0 79 0 chr12 56758128 56758166 -64499364 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1018 535 327 125 68 chr12 56758166 56758250 -64499280 - MTEb LTR MaLR -205 174 87 6 1018 565 310 29 35 chr12 56758251 56758425 -64499105 - MER21B LTR ERV1 -401 462 290 6 1018 593 273 29 35 chr12 56758710 56758881 -64498649 - MTD LTR MaLR -230 189 20 6 1018 556 262 68 30 chr12 56758906 56758941 -64498589 + L1MA9 LINE L1 5711 5746 -566 6 1018 819 229 98 141 chr12 56758941 56759337 -64498193 + MTE2a LTR MaLR 1 379 0 6 1018 556 262 68 30 chr12 56759337 56759537 -64497993 + L1MA9 LINE L1 5747 5955 -357 6 1018 435 269 8 25 chr12 56759547 56759665 -64497865 + PB1D10 SINE Alu 1 116 -1 6 1018 3815 193 65 49 chr12 56760307 56760896 -64496634 + Lx7 LINE L1 6787 7383 -313 6 1018 189 0 0 0 chr12 56760896 56760917 -64496613 + (TTATA)n Simple_repeat Simple_repeat 4 24 0 6 1018 3815 193 65 49 chr12 56760917 56760943 -64496587 + Lx7 LINE L1 7384 7392 -304 6 1018 261 0 0 0 chr12 56760943 56760972 -64496558 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 1018 3815 193 65 49 chr12 56760972 56761250 -64496280 + Lx7 LINE L1 7393 7695 -1 6 1018 587 287 74 39 chr12 56761307 56761460 -64496070 + MER2 DNA MER2_type 1 157 -188 6 1018 351 268 35 9 chr12 56761460 56761573 -64495957 - PB1D10 SINE Alu 0 117 2 6 1018 587 287 74 39 chr12 56761573 56761622 -64495908 + MER2 DNA MER2_type 158 210 -135 6 1018 258 289 47 85 chr12 56762607 56762713 -64494817 - L1MDa LINE L1 -5948 685 584 6 1018 792 242 44 80 chr12 56762805 56763056 -64494474 - MTE2b LTR MaLR -137 242 1 6 1018 355 226 110 49 chr12 56763059 56763222 -64494308 - L1M4 LINE L1 -359 5819 5647 6 1018 2344 155 45 8 chr12 56763249 56763646 -64493884 + MTC LTR MaLR 3 414 -7 6 1018 568 249 57 14 chr12 56763702 56763914 -64493616 - L1M4 LINE L1 -652 5532 5312 6 1018 279 323 60 0 chr12 56763983 56764116 -64493414 - Lx8 LINE L1 -64 7409 7269 6 1018 1435 6 0 22 chr12 56764127 56764306 -64493224 + L1Md_T LINE L1 6408 6582 0 6 1018 748 217 138 72 chr12 56764530 56764659 -64492871 - L1M4 LINE L1 -845 5301 5163 6 1018 1057 30 0 30 chr12 56764659 56764794 -64492736 + B1_Mus2 SINE Alu 2 132 -15 6 1018 216 0 0 0 chr12 56764794 56764818 -64492712 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1018 748 217 138 72 chr12 56764818 56765020 -64492510 - L1M4 LINE L1 -984 5162 4948 6 1018 344 200 12 0 chr12 56765067 56765147 -64492383 + GA-rich Low_complexity Low_complexity 1 81 0 6 1018 312 161 0 36 chr12 56765306 56765390 -64492140 + CT-rich Low_complexity Low_complexity 2 82 0 6 1018 755 218 98 47 chr12 56765396 56765632 -64491898 - L1M4 LINE L1 -1205 4941 4694 6 1018 707 323 44 10 chr12 56766111 56766314 -64491216 - B4A SINE B4 -81 211 2 6 1018 376 331 76 0 chr12 56766314 56766486 -64491044 + MER2 DNA MER2_type 118 302 -43 6 1018 221 159 0 43 chr12 56767305 56767332 -64490198 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1018 507 33 0 0 chr12 56767332 56767393 -64490137 + (GAA)n Simple_repeat Simple_repeat 3 63 0 6 1018 221 159 0 43 chr12 56767393 56767411 -64490119 + (CAA)n Simple_repeat Simple_repeat 1 18 0 6 1018 361 207 57 57 chr12 56767632 56767755 -64489775 + L1M4b LINE L1 68 190 -7144 6 1018 241 394 105 12 chr12 56768016 56768188 -64489342 + L1M4b LINE L1 536 723 -6611 6 1018 1628 122 33 30 chr12 56768326 56768352 -64489178 - Lx2 LINE L1 -644 6353 6334 6 1018 2087 106 10 193 chr12 56768352 56768869 -64488661 + BGLII_Mus LTR ERVK 1 422 0 6 1018 1628 122 33 30 chr12 56768869 56769112 -64488418 - Lx2 LINE L1 -664 6333 6083 6 1018 4474 109 18 1 chr12 56769114 56769766 -64487764 + Lx2 LINE L1 6326 6988 -9 6 1018 423 0 0 0 chr12 56769766 56769813 -64487717 + (TAA)n Simple_repeat Simple_repeat 2 48 0 6 1018 1120 162 14 41 chr12 56769847 56770066 -64487464 + URR1B DNA MER1_type 13 225 0 6 1018 660 240 108 15 chr12 56770476 56770671 -64486859 - B3 SINE B2 0 216 4 6 1018 328 315 9 44 chr12 56770894 56771007 -64486523 + RSINE1 SINE B4 9 117 -48 6 1018 323 126 0 28 chr12 56771122 56771187 -64486343 + MTB_Mm LTR MaLR 1 60 -359 6 1018 715 253 76 0 chr12 56771222 56771380 -64486150 - B3 SINE B2 -46 170 1 6 1018 1034 232 0 58 chr12 56771859 56772083 -64485447 - B3 SINE B2 0 216 6 6 1018 249 216 53 97 chr12 56772291 56772404 -64485126 + L1MC LINE L1 4037 4144 -2002 6 1018 21 57 0 0 chr12 56772603 56772638 -64484892 + AT_rich Low_complexity Low_complexity 1 35 0 6 1018 27 0 0 0 chr12 56772903 56772930 -64484600 + AT_rich Low_complexity Low_complexity 1 27 0 6 1018 549 283 41 46 chr12 56772931 56773127 -64484403 - B3A SINE B2 -2 196 2 6 1018 207 186 0 0 chr12 56773144 56773187 -64484343 + (TTA)n Simple_repeat Simple_repeat 3 45 0 6 1018 459 223 21 21 chr12 56773187 56773283 -64484247 - RSINE1 SINE B4 -10 155 60 6 1018 613 92 0 2 chr12 56773438 56773538 -64483992 - B1_Mm SINE Alu 0 149 51 6 1018 1771 59 5 6 chr12 56773553 56773798 -64483732 + Lx3A LINE L1 5779 6024 -985 6 1018 2895 70 48 79 chr12 56773798 56774277 -64483253 + Lx3A LINE L1 6516 6979 -2 6 1018 266 286 31 0 chr12 56774846 56774944 -64482586 + (TA)n Simple_repeat Simple_repeat 2 102 0 6 1018 38 22 0 0 chr12 56774955 56775000 -64482530 + AT_rich Low_complexity Low_complexity 1 45 0 6 1018 448 364 0 26 chr12 56775215 56775370 -64482160 + RSINE1 SINE B4 2 152 -13 6 1018 494 265 142 33 chr12 56775682 56775839 -64481691 + ID_B1 SINE B4 56 217 -7 6 1018 259 204 258 11 chr12 56776153 56776242 -64481288 - PB1D10 SINE Alu -2 115 5 6 1018 210 171 0 0 chr12 56776309 56776350 -64481180 + CT-rich Low_complexity Low_complexity 3 43 0 6 1018 1147 56 14 0 chr12 56776375 56776518 -64481012 - B1_Mus1 SINE Alu 0 148 4 6 1018 207 0 0 0 chr12 56776787 56776810 -64480720 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 7 1018 915 222 34 19 chr12 56776893 56777100 -64480430 - B3 SINE B2 -6 210 1 7 1018 337 259 223 7 chr12 56777129 56777277 -64480253 - B3A SINE B2 -15 183 4 7 1018 799 163 37 0 chr12 56778428 56778563 -64478967 - B1_Mus2 SINE Alu -7 140 1 7 1018 797 213 35 0 chr12 56778996 56779165 -64478365 + B3A SINE B2 3 177 -21 7 1018 354 23 0 0 chr12 56779167 56779210 -64478320 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1018 328 265 0 0 chr12 56779246 56779314 -64478216 + ID2 SINE ID 3 70 -13 7 1018 488 185 45 29 chr12 56779620 56779742 -64477788 + ORR1D2 LTR MaLR 1 117 -261 7 1018 839 172 7 40 chr12 56780196 56780347 -64477183 - B1_Mur3 SINE Alu -1 148 3 7 1018 207 0 0 0 chr12 56780566 56780589 -64476941 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 7 1018 363 255 28 9 chr12 56780874 56780981 -64476549 + PB1D10 SINE Alu 7 115 -2 7 1018 1961 82 106 0 chr12 56783014 56783306 -64474224 - Lx2 LINE L1 0 6997 6675 7 1018 1920 113 28 0 chr12 56783306 56783588 -64473942 + Lx2 LINE L1 6373 6662 -335 7 1018 1300 82 0 5 chr12 56784067 56784251 -64473279 + B2_Mm2 SINE B2 13 195 0 7 1018 446 258 87 16 chr12 56784326 56784452 -64473078 + RSINE1 SINE B4 2 136 -29 7 1018 274 298 87 0 chr12 56784493 56784597 -64472933 - MIR SINE MIR -25 237 125 7 1018 302 234 77 13 chr12 56785708 56785786 -64471744 + MTEb LTR MaLR 1 83 -296 7 1018 399 266 2 20 chr12 56785776 56785885 -64471645 + B4A SINE B4 183 286 -6 7 1018 531 296 12 56 chr12 56785929 56786090 -64471440 + MTEb LTR MaLR 98 251 -128 7 1018 653 311 12 6 chr12 56786150 56786315 -64471215 - ID_B1 SINE B4 -57 167 2 7 1018 716 261 13 19 chr12 56786636 56786792 -64470738 - RSINE1 SINE B4 0 165 11 7 1018 982 247 75 0 chr12 56786808 56787075 -64470455 - B4A SINE B4 -2 290 4 7 1018 585 200 43 0 chr12 56787406 56787521 -64470009 + ORR1D1 LTR MaLR 1 120 -254 7 1018 325 341 0 8 chr12 56787642 56787772 -64469758 + L1MC4 LINE L1 7682 7810 -232 7 1018 302 253 51 0 chr12 56788112 56788191 -64469339 - ID2 SINE ID 0 83 1 7 1018 2420 46 3 3 chr12 56789327 56789633 -64467897 + MTA_Mm LTR MaLR 40 345 -51 7 1018 24 0 0 0 chr12 56789987 56790011 -64467519 + AT_rich Low_complexity Low_complexity 1 24 0 7 1018 322 363 40 14 chr12 56790013 56790161 -64467369 - RSINE1 SINE B4 -11 154 3 7 1018 22 56 0 0 chr12 56790708 56790744 -64466786 + AT_rich Low_complexity Low_complexity 1 36 0 7 1018 3583 34 5 0 chr12 56790925 56791362 -64466168 + L1Md_F2 LINE L1 6142 6580 -2 7 1018 815 268 5 32 chr12 56791775 56791991 -64465539 + ID_B1 SINE B4 7 216 -8 7 1018 1156 42 14 0 chr12 56792096 56792240 -64465290 + B1_Mus1 SINE Alu 3 148 0 7 1018 240 35 0 0 chr12 56792241 56792270 -64465260 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 7 1018 22 0 0 0 chr12 56792377 56792399 -64465131 + AT_rich Low_complexity Low_complexity 1 22 0 7 1018 227 359 0 0 chr12 56792444 56792508 -64465022 - AluG_3 SINE Alu -98 213 150 7 1018 412 261 82 22 chr12 56792520 56792703 -64464827 - B2_Mm2 SINE B2 -8 208 6 7 1018 236 130 22 0 chr12 56792717 56792763 -64464767 + CT-rich Low_complexity Low_complexity 2 48 0 7 1018 21 0 0 0 chr12 56792940 56792961 -64464569 + AT_rich Low_complexity Low_complexity 1 21 0 7 1018 541 295 40 11 chr12 56792978 56793153 -64464377 - B3A SINE B2 -18 180 1 7 1018 322 317 0 0 chr12 56793183 56793265 -64464265 - ID4_ SINE ID 0 83 2 7 1018 279 296 148 0 chr12 56793276 56793364 -64464166 - PB1 SINE Alu -4 123 23 7 1018 207 184 0 0 chr12 56793437 56793475 -64464055 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1018 824 216 56 15 chr12 56793743 56793940 -64463590 + B3 SINE B2 1 205 -11 7 1018 1041 163 103 4 chr12 56793952 56794186 -64463344 + Lx3C LINE L1 6718 6974 -2 7 1018 263 313 65 51 chr12 56794815 56794953 -64462577 + B1F SINE Alu 1 140 -9 7 1018 21 0 0 0 chr12 56795035 56795056 -64462474 + AT_rich Low_complexity Low_complexity 1 21 0 7 1018 764 268 43 19 chr12 56795086 56795295 -64462235 - B3 SINE B2 -2 214 1 7 1018 192 217 0 0 chr12 56795674 56795720 -64461810 + CT-rich Low_complexity Low_complexity 4 49 0 7 1018 333 0 0 0 chr12 56795722 56795759 -64461771 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1018 369 0 0 0 chr12 56795759 56795799 -64461731 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1018 240 27 0 0 chr12 56795933 56795970 -64461560 + L1_Mus2 LINE L1 6530 6566 0 7 1018 2591 90 20 20 chr12 56796402 56796810 -64460720 - L1_Mur1 LINE L1 -2270 3616 3209 7 1018 301 282 34 34 chr12 56796812 56796900 -64460630 + B4A SINE B4 197 284 -8 7 1018 7339 66 14 55 chr12 56797275 56797792 -64459738 + L1_Mus3 LINE L1 5303 5796 -87 7 1018 1146 83 0 0 chr12 56797792 56797937 -64459593 + B1_Mus1 SINE Alu 2 146 -2 7 1018 7339 58 31 71 chr12 56797937 56798799 -64458731 + L1_Mus3 LINE L1 5782 6638 0 7 1018 191 307 66 13 chr12 56798971 56799047 -64458483 - L2b LINE L2 -8 3418 3339 7 1018 483 221 34 42 chr12 56800146 56800264 -64457266 - PB1D10 SINE Alu 0 117 1 7 1018 282 318 9 9 chr12 56800787 56800898 -64456632 + PB1D10 SINE Alu 5 115 -2 7 1018 735 98 56 0 chr12 56802213 56802353 -64455177 - B2_Mm2 SINE B2 -14 179 31 7 1018 211 355 53 0 chr12 56802409 56802485 -64455045 - L2b LINE L2 -18 3357 3278 7 1018 21 0 0 0 chr12 56804177 56804198 -64453332 + AT_rich Low_complexity Low_complexity 1 21 0 7 1018 21 57 0 0 chr12 56804327 56804362 -64453168 + AT_rich Low_complexity Low_complexity 1 35 0 7 1018 2653 105 10 10 chr12 56805010 56805413 -64452117 - RLTR9D LTR ERVK 0 403 1 7 1018 351 242 0 52 chr12 56805462 56805558 -64451972 + PB1D10 SINE Alu 27 117 0 7 1018 5801 78 101 7 chr12 56805696 56807174 -64450356 - L1VL2 LINE L1 -1789 1826 207 7 1018 26 0 0 0 chr12 56807427 56807453 -64450077 + AT_rich Low_complexity Low_complexity 1 26 0 7 1018 2956 78 44 13 chr12 56807887 56808362 -64449168 - L1M6 LINE L1 -4043 2453 1931 7 1018 1114 252 65 60 chr12 56808528 56808895 -64448635 - MTE2a LTR MaLR 0 379 11 7 1018 219 161 35 18 chr12 56809374 56809431 -64448099 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1018 252 294 11 11 chr12 56809459 56809552 -64447978 + BC1_Mm scRNA scRNA 9 101 -51 7 1018 1099 61 7 39 chr12 56809749 56809902 -64447628 - B1_Mus1 SINE Alu 0 148 1 7 1018 328 258 182 8 chr12 56810322 56810443 -64447087 - B1F SINE Alu -6 143 2 7 1018 271 276 13 13 chr12 56810971 56811048 -64446482 - RSINE1 SINE B4 -85 80 4 7 1018 5369 242 95 7 chr12 56811311 56811394 -64446136 + Lx6 LINE L1 5974 6061 -1399 7 1018 531 0 0 0 chr12 56811394 56811453 -64446077 + (TGG)n Simple_repeat Simple_repeat 2 60 0 7 1018 5369 242 95 7 chr12 56811453 56812723 -64444807 + Lx6 LINE L1 6062 7447 -13 7 1018 259 204 83 16 chr12 56813089 56813175 -64444355 + B1F1 SINE Alu 7 104 -13 7 1018 397 145 34 57 chr12 56813173 56813261 -64444269 + PB1D9 SINE Alu 22 107 -13 7 1018 486 46 0 0 chr12 56813263 56813328 -64444202 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 7 1018 211 204 23 0 chr12 56813328 56813372 -64444158 + GA-rich Low_complexity Low_complexity 5 49 0 7 1018 22 35 0 0 chr12 56813430 56813459 -64444071 + AT_rich Low_complexity Low_complexity 1 29 0 7 1018 482 252 51 25 chr12 56814181 56814299 -64443231 + ID_B1 SINE B4 97 217 -7 7 1018 269 288 213 29 chr12 56814313 56814449 -64443081 + RSINE1 SINE B4 3 163 -2 7 1018 310 327 19 0 chr12 56814532 56814639 -64442891 + PB1D10 SINE Alu 2 110 -7 7 1018 30 27 0 0 chr12 56814757 56814794 -64442736 + AT_rich Low_complexity Low_complexity 1 37 0 7 1018 1394 158 5 0 chr12 56814870 56815092 -64442438 + URR1A DNA MER1_type 3 225 -1 7 1018 192 40 0 0 chr12 56815914 56815939 -64441591 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1018 388 309 73 8 chr12 56815942 56816066 -64441464 - RSINE1 SINE B4 -21 144 13 7 1018 506 302 132 21 chr12 56816866 56817109 -64440421 - B4A SINE B4 -17 275 6 7 1018 23 0 0 0 chr12 56817516 56817539 -64439991 + AT_rich Low_complexity Low_complexity 1 23 0 7 1018 21 36 0 0 chr12 56818273 56818301 -64439229 + AT_rich Low_complexity Low_complexity 1 28 0 7 1018 206 219 16 0 chr12 56818392 56818456 -64439074 + CT-rich Low_complexity Low_complexity 3 67 0 7 1018 236 331 17 61 chr12 56818772 56818952 -64438578 + Charlie18a DNA MER1_type 137 308 -34 7 1018 22 0 0 0 chr12 56819317 56819339 -64438191 + AT_rich Low_complexity Low_complexity 1 22 0 7 1018 26 30 0 0 chr12 56820026 56820059 -64437471 + AT_rich Low_complexity Low_complexity 1 33 0 7 1018 471 254 43 14 chr12 56820146 56820286 -64437244 - B1F1 SINE Alu -5 144 1 7 1018 301 234 89 25 chr12 56820349 56820428 -64437102 + RSINE1 SINE B4 82 165 0 7 1018 895 87 220 0 chr12 56824496 56824646 -64432884 - B2_Mm2 SINE B2 -11 184 2 7 1018 25 0 0 0 chr12 56824651 56824676 -64432854 + AT_rich Low_complexity Low_complexity 1 25 0 7 1018 2043 168 68 18 chr12 56824813 56825208 -64432322 + MTD LTR MaLR 1 415 -4 7 1018 249 348 76 0 chr12 56825243 56825335 -64432195 - MIR3 SINE MIR -7 201 103 7 1018 302 169 15 0 chr12 56825430 56825495 -64432035 + (TA)n Simple_repeat Simple_repeat 1 66 0 7 1018 449 217 42 42 chr12 56825668 56825788 -64431742 + PB1D7 SINE Alu 1 120 0 7 1018 428 305 57 31 chr12 56826400 56826559 -64430971 + B3A SINE B2 36 198 0 7 1018 453 270 55 55 chr12 56827150 56827295 -64430235 - B1F SINE Alu 0 149 5 8 1018 388 260 10 40 chr12 56827387 56827487 -64430043 + ID_B1 SINE B4 95 191 -33 8 1018 239 333 45 18 chr12 56827960 56828070 -64429460 - PB1D9 SINE Alu -7 113 1 8 1018 12789 135 27 24 chr12 56828093 56831469 -64426061 - Lx2B LINE L1 -13 6987 3594 8 1018 416 288 48 0 chr12 56832382 56832493 -64425037 + PB1D7 SINE Alu 5 119 -1 8 1018 1353 91 16 0 chr12 56832682 56832868 -64424662 + B2_Mm2 SINE B2 2 190 -5 8 1018 327 206 75 11 chr12 56832980 56833073 -64424457 + ID_B1 SINE B4 120 218 -6 8 1018 21 57 0 0 chr12 56833666 56833701 -64423829 + AT_rich Low_complexity Low_complexity 1 35 0 8 1018 21 57 0 0 chr12 56833864 56833899 -64423631 + AT_rich Low_complexity Low_complexity 1 35 0 8 1018 467 180 43 43 chr12 56834318 56834434 -64423096 + PB1D9 SINE Alu 5 120 0 8 1018 520 266 47 0 chr12 56834590 56834718 -64422812 + B1F SINE Alu 5 138 -11 8 1018 650 244 30 0 chr12 56836828 56836963 -64420567 + ID_B1 SINE B4 86 224 0 8 1018 513 47 0 0 chr12 56837324 56837388 -64420142 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 8 1018 183 80 0 0 chr12 56837822 56837847 -64419683 + (GGA)n Simple_repeat Simple_repeat 2 26 0 8 1018 300 325 175 48 chr12 56837961 56838087 -64419443 + PB1D7 SINE Alu 1 142 -7 8 1018 562 115 11 0 chr12 56838691 56838778 -64418752 - BC1_Mm scRNA scRNA -64 88 1 8 1018 21 82 0 0 chr12 56840048 56840097 -64417433 + AT_rich Low_complexity Low_complexity 1 49 0 8 1018 905 85 92 7 chr12 56841532 56841674 -64415856 + B2_Mm2 SINE B2 1 154 -41 8 1018 25 38 0 37 chr12 56841699 56841715 -64415815 + AT_rich Low_complexity Low_complexity 1 16 0 8 1018 198 0 0 0 chr12 56841715 56841737 -64415793 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 8 1018 617 39 408 0 chr12 56841737 56841840 -64415690 - B1_Mm SINE Alu -1 146 2 8 1018 25 38 0 37 chr12 56841840 56841876 -64415654 + AT_rich Low_complexity Low_complexity 1 35 0 8 1018 21 0 0 0 chr12 56842693 56842714 -64414816 + AT_rich Low_complexity Low_complexity 1 21 0 8 1018 510 243 80 2 chr12 56842807 56842953 -64414577 - ID_B1 SINE B4 -46 246 86 8 1018 207 188 0 0 chr12 56842998 56843046 -64414484 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1018 911 229 6 11 chr12 56843054 56843235 -64414295 - B3A SINE B2 -18 180 1 8 1018 319 313 61 0 chr12 56843401 56843500 -64414030 + PB1D10 SINE Alu 1 105 -12 8 1018 211 286 0 0 chr12 56843521 56843570 -64413960 + GA-rich Low_complexity Low_complexity 3 51 0 8 1018 710 224 62 98 chr12 56843799 56843992 -64413538 + B3 SINE B2 2 187 -8 8 1018 221 238 0 0 chr12 56844000 56844051 -64413479 + ID2 SINE ID 1 51 -32 8 1018 252 0 0 0 chr12 56844058 56844086 -64413444 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 8 1018 271 224 53 105 chr12 56844119 56844214 -64413316 + B2_Mm2 SINE B2 1 90 -105 8 1018 1166 214 0 5 chr12 56844491 56844702 -64412828 + B3 SINE B2 2 211 -5 8 1018 295 235 51 20 chr12 56844859 56844960 -64412570 - PB1D10 SINE Alu 0 117 14 8 1018 842 217 19 43 chr12 56845213 56845420 -64412110 + B3 SINE B2 2 203 -13 8 1018 243 88 0 0 chr12 56845544 56845578 -64411952 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 8 1018 804 127 27 40 chr12 56845579 56845727 -64411803 - B1_Mur4 SINE Alu 0 150 5 8 1018 372 295 14 72 chr12 56845757 56845896 -64411634 + RMER12 LTR ERVK 720 850 -472 8 1018 346 270 0 26 chr12 56845930 56846006 -64411524 + PB1D10 SINE Alu 9 82 -35 8 1018 355 260 23 109 chr12 56846009 56846120 -64411410 + B2_Mm2 SINE B2 49 157 -38 8 1018 537 99 0 0 chr12 56846120 56846201 -64411329 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1018 355 252 14 121 chr12 56846201 56846244 -64411286 + B2_Mm2 SINE B2 158 190 -5 8 1018 254 96 0 161 chr12 56846243 56846305 -64411225 + PB1D10 SINE Alu 65 116 -1 8 1018 2670 163 47 12 chr12 56846383 56846893 -64410637 + RLTR11A LTR ERVK 1 528 0 8 1018 32 26 0 0 chr12 56847477 56847516 -64410014 + AT_rich Low_complexity Low_complexity 1 39 0 8 1018 573 304 7 26 chr12 56848311 56848463 -64409067 - B1F2 SINE Alu 0 149 1 8 1018 345 280 61 0 chr12 56848505 56848606 -64408924 + PB1D7 SINE Alu 1 107 -13 8 1018 468 0 0 0 chr12 56848626 56848678 -64408852 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1018 353 276 0 0 chr12 56849170 56849246 -64408284 - ID_B1 SINE B4 -2 222 147 8 1018 321 264 32 42 chr12 56849246 56849260 -64408270 - B1_Mur1 SINE Alu 0 144 56 8 1018 1281 136 23 14 chr12 56849524 56849740 -64407790 + ORR1B2 LTR MaLR 150 367 0 8 1018 7621 165 31 8 chr12 56849741 56851129 -64406401 + ORR1B2-int LTR MaLR 2 1421 -88 8 1018 7383 77 16 5 chr12 56851129 56851579 -64405951 - L1_Mur1 LINE L1 -157 5729 5280 8 1018 219 36 0 0 chr12 56851579 56851607 -64405923 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1018 7383 77 16 5 chr12 56851607 56852186 -64405344 - L1_Mur1 LINE L1 -607 5279 4690 8 1018 832 19 97 0 chr12 56852186 56852289 -64405241 + Lx3_Mus LINE L1 5747 5859 -1150 8 1018 1542 156 194 7 chr12 56852297 56852606 -64404924 + ORR1B2 LTR MaLR 1 367 0 8 1018 13138 77 36 32 chr12 56852712 56855471 -64402059 + L1VL2 LINE L1 220 2988 -627 8 1018 711 112 0 0 chr12 56856067 56856174 -64401356 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 8 1018 533 314 93 19 chr12 56856356 56856668 -64400862 + L1M5 LINE L1 3687 4021 -2125 8 1018 462 139 46 9 chr12 56856741 56856850 -64400680 + Lx9 LINE L1 7529 7641 -3 8 1018 334 325 93 49 chr12 56856931 56857093 -64400437 - L2a LINE L2 -312 3114 2946 8 1018 513 0 0 0 chr12 56857116 56857173 -64400357 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 8 1018 227 268 121 12 chr12 56857484 56857567 -64399963 - L2a LINE L2 -580 2839 2748 8 1018 207 278 40 27 chr12 56857767 56857841 -64399689 - L2a LINE L2 -1361 2058 1984 8 1018 288 298 250 0 chr12 56858249 56858353 -64399177 + RSINE1 SINE B4 2 131 -34 8 1018 234 242 16 16 chr12 56858768 56858831 -64398699 + ID4_ SINE ID 5 67 -16 8 1018 354 98 0 0 chr12 56858842 56858893 -64398637 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1018 1180 43 0 0 chr12 56859545 56859686 -64397844 + B1_Mm SINE Alu 1 141 -6 8 1018 186 0 28 56 chr12 56859688 56859724 -64397806 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 8 1018 481 250 0 37 chr12 56860006 56860114 -64397416 - PB1D7 SINE Alu -13 107 4 8 1018 332 237 26 0 chr12 56860124 56860200 -64397330 - ID4 SINE ID -4 79 2 8 1018 219 154 38 19 chr12 56860632 56860685 -64396845 + (TTTG)n Simple_repeat Simple_repeat 1 54 0 8 1018 652 213 49 7 chr12 56860685 56860827 -64396703 - B1_Mur2 SINE Alu 0 149 2 8 1018 1578 143 92 0 chr12 56860951 56861244 -64396286 + IAPEY3_LTR LTR ERVK 1 320 -12 8 1018 2037 246 110 27 chr12 56861802 56862586 -64394944 + RCHARR1 DNA MER1_type 33 881 -93 8 1018 535 175 107 0 chr12 56862595 56862698 -64394832 - B1_Mur1 SINE Alu -25 124 11 8 1018 278 279 45 55 chr12 56862610 56862720 -64394810 - MT2B LTR ERVL -338 263 155 8 1018 1668 21 0 0 chr12 56862778 56862965 -64394565 + B2_Mm1a SINE B2 1 187 -6 8 1018 880 45 0 0 chr12 56862975 56863085 -64394445 + B1_Mus1 SINE Alu 39 148 0 8 1018 218 32 0 31 chr12 56863184 56863216 -64394314 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 8 1018 1657 281 184 39 chr12 56864188 56865116 -64392414 + L1_Mur3 LINE L1 1274 2245 -3635 8 1018 1163 48 0 0 chr12 56865116 56865263 -64392267 + B1_Mm SINE Alu 1 147 0 8 1018 1657 281 184 39 chr12 56865263 56866223 -64391307 + L1_Mur3 LINE L1 2246 3434 -2446 8 1018 1099 258 83 47 chr12 56866239 56866769 -64390761 + L1_Mur3 LINE L1 3639 4187 -1693 8 1018 2317 156 24 0 chr12 56866817 56867190 -64390340 + RLTR14 LTR ERV1 1 382 0 8 1018 1727 267 174 72 chr12 56867190 56867364 -64390166 + L1_Mur3 LINE L1 4196 4367 -1513 8 1018 216 86 0 0 chr12 56867364 56867399 -64390131 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 8 1018 1727 267 174 72 chr12 56867399 56867461 -64390069 + L1_Mur3 LINE L1 4368 4421 -1459 8 1018 715 262 7 7 chr12 56867461 56867611 -64389919 - RSINE1 SINE B4 -13 152 3 8 1018 1727 267 174 72 chr12 56867611 56868485 -64389045 + L1_Mur3 LINE L1 4422 5436 -444 8 1018 951 213 44 5 chr12 56868485 56868688 -64388842 + B3 SINE B2 1 211 -5 8 1018 1727 267 174 72 chr12 56868688 56869022 -64388508 + L1_Mur3 LINE L1 5437 5790 -90 8 1018 1082 90 0 0 chr12 56869064 56869209 -64388321 + B1_Mus1 SINE Alu 2 146 -2 8 1018 256 24 0 47 chr12 56869226 56869269 -64388261 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 8 1018 720 102 0 0 chr12 56869561 56869659 -64387871 + B2_Mm2 SINE B2 3 100 -95 8 1018 1232 304 94 79 chr12 56869693 56869938 -64387592 + Lx8 LINE L1 6564 6792 -681 8 1018 357 176 50 157 chr12 56869938 56870059 -64387471 - PB1D9 SINE Alu -10 110 3 8 1018 1232 304 94 79 chr12 56870059 56870546 -64386984 + Lx8 LINE L1 6793 7307 -166 8 1018 739 276 69 91 chr12 56870649 56870968 -64386562 - MTE2a LTR MaLR -67 312 1 8 1018 1129 201 198 18 chr12 56870974 56871308 -64386222 + MTC LTR MaLR 26 419 -2 8 1018 230 271 42 0 chr12 56871375 56871423 -64386107 + tRNA-Ala-GCY_ tRNA tRNA 1 50 -25 8 1018 204 229 0 20 chr12 56872226 56872275 -64385255 + GA-rich Low_complexity Low_complexity 4 51 0 8 1018 7217 202 110 9 chr12 56872389 56872874 -64384656 + Lx7 LINE L1 3758 4275 -1605 8 1018 225 0 0 0 chr12 56872874 56872899 -64384631 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1018 7217 202 110 9 chr12 56872899 56874220 -64383310 + Lx7 LINE L1 4276 5745 -135 8 1018 1231 41 0 0 chr12 56874220 56874367 -64383163 + B1_Mus1 SINE Alu 1 147 -1 8 1018 925 303 100 148 chr12 56874367 56874398 -64383132 + Lx7 LINE L1 5737 5737 -1723 8 1018 1699 21 0 0 chr12 56874398 56874591 -64382939 + B2_Mm1a SINE B2 1 193 0 8 1018 1148 281 75 78 chr12 56874591 56875239 -64382291 + Lx7 LINE L1 5737 6408 -1288 8 1018 3020 247 38 21 chr12 56875320 56876110 -64381420 + Lx7 LINE L1 6606 7408 -288 8 1018 24 53 0 0 chr12 56876212 56876250 -64381280 + AT_rich Low_complexity Low_complexity 1 38 0 8 1018 28 29 0 0 chr12 56876805 56876840 -64380690 + AT_rich Low_complexity Low_complexity 1 35 0 8 1018 21 0 0 0 chr12 56877326 56877347 -64380183 + AT_rich Low_complexity Low_complexity 1 21 0 8 1018 580 113 110 28 chr12 56877450 56877559 -64379971 + B1_Mus2 SINE Alu 30 147 0 8 1018 391 311 37 0 chr12 56877875 56878010 -64379520 + B1F SINE Alu 2 141 -8 8 1018 349 260 152 6 chr12 56878840 56879018 -64378512 + L1MC4 LINE L1 7161 7364 -678 8 1018 1738 278 90 18 chr12 56879056 56879658 -64377872 + Lx8 LINE L1 6827 7471 -2 9 1018 1809 63 16 12 chr12 56879725 56879967 -64377563 + L1Md_F3 LINE L1 5344 5586 -297 9 1018 8417 25 6 1 chr12 56879967 56880960 -64376570 + L1Md_F3 LINE L1 5587 6584 0 9 1018 2745 3 0 0 chr12 56880967 56881273 -64376257 - L1Md_T LINE L1 -667 5915 5610 9 1018 4288 10 0 0 chr12 56881273 56881797 -64375733 + L1Md_T LINE L1 6104 6582 0 9 1018 322 214 98 84 chr12 56881936 56882059 -64375471 + B1F SINE Alu 1 120 -29 9 1018 195 42 0 0 chr12 56882061 56882085 -64375445 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 9 1018 210 26 50 25 chr12 56882218 56882258 -64375272 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 9 1018 1023 40 0 0 chr12 56882258 56882384 -64375146 - B1_Mm SINE Alu -11 136 11 9 1018 461 178 8 108 chr12 56882282 56882402 -64375128 - MT2B LTR ERVL -337 264 157 9 1018 347 291 73 0 chr12 56882747 56882763 -64374767 + B4 SINE B4 70 93 -199 9 1018 591 198 8 33 chr12 56882763 56882883 -64374647 + PB1D9 SINE Alu 4 120 0 9 1018 660 292 70 48 chr12 56882896 56883166 -64374364 + B4A SINE B4 1 276 -16 9 1018 324 0 0 0 chr12 56883177 56883213 -64374317 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1018 877 236 285 0 chr12 56883229 56883517 -64374013 + ORR1D2 LTR MaLR 1 370 0 9 1018 261 0 0 0 chr12 56884306 56884335 -64373195 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1018 583 266 34 25 chr12 56884657 56884861 -64372669 + B3 SINE B2 1 206 -10 9 127 685 302 75 77 chr12 56885217 56885605 -64371925 + MLT1B LTR MaLR 4 390 0 9 1019 27 103 0 0 chr12 56885765 56885862 -64371668 + AT_rich Low_complexity Low_complexity 1 97 0 9 1019 375 270 0 33 chr12 56885969 56886061 -64371469 + ID_B1 SINE B4 132 220 -4 9 1019 1139 311 81 79 chr12 56886114 56886645 -64370885 + MER74A LTR ERVL 27 558 0 9 1019 207 69 0 0 chr12 56886691 56886720 -64370810 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 9 1019 662 322 50 69 chr12 56886740 56887000 -64370530 + B4A SINE B4 20 274 -18 9 1019 236 217 233 0 chr12 56887492 56887552 -64369978 + ID4_ SINE ID 2 75 -8 9 1019 579 296 50 17 chr12 56888174 56888353 -64369177 - ID_B1 SINE B4 -17 207 23 9 1019 451 233 33 163 chr12 56889625 56889840 -64367690 - B3A SINE B2 -10 188 2 9 1019 583 226 54 38 chr12 56889877 56890061 -64367469 + Lx6 LINE L1 7248 7434 -26 9 1019 531 301 30 0 chr12 56890189 56890322 -64367208 + ID_B1 SINE B4 81 217 -7 9 1019 871 174 11 0 chr12 56890541 56890719 -64366811 + CT-rich Low_complexity Low_complexity 1 180 0 9 1019 627 130 0 0 chr12 56890720 56890820 -64366710 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 9 1019 285 302 69 31 chr12 56891086 56891216 -64366314 - B4A SINE B4 -157 135 1 9 1019 501 166 194 65 chr12 56891602 56891757 -64365773 + MT2A LTR ERVL 3 177 -356 9 1019 225 227 11 33 chr12 56891759 56891850 -64365680 + GA-rich Low_complexity Low_complexity 3 91 0 9 1019 21 0 0 0 chr12 56891936 56891957 -64365573 + AT_rich Low_complexity Low_complexity 1 21 0 9 1019 3027 35 3 28 chr12 56892167 56892555 -64364975 + L1Md_F2 LINE L1 6202 6579 -3 9 1019 364 284 208 11 chr12 56892614 56892792 -64364738 - MIRb SINE MIR -50 218 6 9 1019 188 34 0 33 chr12 56893480 56893510 -64364020 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 9 1019 1011 90 15 0 chr12 56893510 56893643 -64363887 - B1_Mus1 SINE Alu -13 135 1 9 1019 243 0 0 0 chr12 56893651 56893678 -64363852 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1019 272 296 11 69 chr12 56893693 56893780 -64363750 + ID4_ SINE ID 2 83 0 9 1019 492 270 0 34 chr12 56894147 56894266 -64363264 - PB1D10 SINE Alu 0 117 3 9 1019 290 300 43 22 chr12 56894737 56894752 -64362778 + ID_B1 SINE B4 76 169 -55 9 1019 291 276 104 13 chr12 56894752 56894829 -64362701 + B1F1 SINE Alu 8 91 -58 9 1019 946 257 112 27 chr12 56894831 56895249 -64362281 + RMER15 LTR ERVL 1 574 -1 9 1019 729 228 0 7 chr12 56895282 56895432 -64362098 + B1_Mur1 SINE Alu 1 149 0 9 1019 1564 43 0 0 chr12 56895542 56895728 -64361802 + B2_Mm1t SINE B2 1 186 -7 9 1019 21 36 0 0 chr12 56895902 56895930 -64361600 + AT_rich Low_complexity Low_complexity 1 28 0 9 1019 312 317 0 47 chr12 56896234 56896246 -64361284 + ID4_ SINE ID 2 36 -47 9 1019 322 262 0 0 chr12 56896246 56896307 -64361223 + tRNA-Ala-GCY_ tRNA tRNA 4 64 -11 9 1019 312 317 0 47 chr12 56896307 56896320 -64361210 + ID4_ SINE ID 37 83 0 9 1019 360 260 19 29 chr12 56897052 56897155 -64360375 + PB1D10 SINE Alu 1 102 -15 9 1019 258 32 0 0 chr12 56897161 56897192 -64360338 + (CAGAGA)n Simple_repeat Simple_repeat 4 34 0 9 1019 747 186 54 107 chr12 56897229 56897417 -64360113 + B2_Mm2 SINE B2 2 181 -14 9 1019 1209 61 0 0 chr12 56897417 56897565 -64359965 + B1_Mus1 SINE Alu 1 148 0 9 1019 747 186 54 107 chr12 56897565 56897581 -64359949 + B2_Mm2 SINE B2 182 195 0 9 1019 637 251 108 0 chr12 56898495 56898662 -64358868 - B3A SINE B2 -13 185 1 9 1019 734 261 37 5 chr12 56898807 56898996 -64358534 + B3 SINE B2 12 206 -10 9 1019 180 0 0 0 chr12 56899290 56899310 -64358220 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1019 1248 41 0 0 chr12 56899661 56899808 -64357722 + B1_Mus2 SINE Alu 1 147 0 9 1019 213 244 0 0 chr12 56899893 56899934 -64357596 + ID SINE ID 4 44 -180 9 1019 279 156 0 0 chr12 56900098 56900143 -64357387 - RLTR30 LTR ERV1 -334 45 1 9 1019 204 40 0 0 chr12 56900162 56900187 -64357343 + (TTG)n Simple_repeat Simple_repeat 2 26 0 9 1019 933 226 44 0 chr12 56900470 56900651 -64356879 + B3 SINE B2 25 213 -3 9 1019 202 205 0 0 chr12 56900903 56900942 -64356588 + (CTG)n Simple_repeat Simple_repeat 3 41 0 9 1019 418 232 317 17 chr12 56901486 56901947 -64355583 + L1M4 LINE L1 4533 5131 -1015 9 1019 270 0 0 0 chr12 56902127 56902157 -64355373 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1019 538 267 86 54 chr12 56902197 56902318 -64355212 + L1M4 LINE L1 5318 5438 -742 9 1019 337 236 0 0 chr12 56902318 56902390 -64355140 + ID4 SINE ID 2 73 -10 9 1019 538 267 86 54 chr12 56902390 56902581 -64354949 + L1M4 LINE L1 5439 5640 -540 9 1019 678 223 222 21 chr12 56902586 56902865 -64354665 + L1MB7 LINE L1 5692 6026 -158 9 1019 286 325 0 0 chr12 56903497 56903574 -64353956 - Charlie10 DNA MER1_type -2638 184 108 9 1019 218 306 0 0 chr12 56903975 56904024 -64353506 + L2c LINE L2 3101 3149 -238 9 1019 235 336 84 5 chr12 56904839 56904985 -64352545 + MIR SINE MIR 104 260 -2 9 1019 1334 60 11 5 chr12 56905586 56905770 -64351760 - L1_Mus3 LINE L1 0 6638 6454 9 1019 807 132 8 0 chr12 56905778 56905899 -64351631 - B2_Mm1a SINE B2 -71 122 1 9 1019 252 318 141 0 chr12 56906107 56906192 -64351338 + B1F1 SINE Alu 4 100 -49 9 1019 395 343 88 35 chr12 56906300 56906584 -64350946 - MLT1D LTR MaLR -8 497 199 9 1019 644 163 18 11 chr12 56907741 56907883 -64349647 + B1_Mur4 SINE Alu 5 147 -3 9 1019 441 95 0 0 chr12 56907898 56907961 -64349569 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1019 542 306 157 28 chr12 56908524 56908779 -64348751 + B4A SINE B4 2 289 -3 9 1019 509 264 80 0 chr12 56908852 56908977 -64348553 + B1_Mur3 SINE Alu 3 137 -12 9 1019 216 300 31 62 chr12 56909355 56909451 -64348079 + L4 LINE RTE 1745 1837 -192 9 1019 478 279 158 48 chr12 56909877 56910155 -64347375 + L1MEc LINE L1 1425 1768 -4632 9 1019 1254 102 11 16 chr12 56910155 56910344 -64347186 - B2_Mm2 SINE B2 -6 189 2 9 1019 478 279 158 48 chr12 56910344 56910483 -64347047 + L1MEc LINE L1 1769 1900 -4500 9 1019 303 286 13 0 chr12 56910483 56910560 -64346970 + ID4_ SINE ID 3 80 -3 9 1019 478 279 158 48 chr12 56910560 56910766 -64346764 + L1MEc LINE L1 1901 2117 -4283 9 1019 479 234 121 0 chr12 56910927 56911051 -64346479 + B1F2 SINE Alu 3 141 -8 9 1019 186 118 0 0 chr12 56911052 56911086 -64346444 + (CCAA)n Simple_repeat Simple_repeat 1 34 0 9 1019 832 225 49 27 chr12 56911094 56911277 -64346253 + ID_B1 SINE B4 1 187 -37 9 1019 302 217 163 0 chr12 56911870 56911962 -64345568 + L1MEc LINE L1 2423 2529 -3790 9 1019 472 274 60 33 chr12 56911962 56912113 -64345417 + RSINE1 SINE B4 11 165 0 9 1019 1185 120 33 5 chr12 56912141 56912325 -64345205 - B2_Mm2 SINE B2 -5 190 2 9 1019 331 236 33 22 chr12 56912371 56912462 -64345068 + L1MD LINE L1 4018 4109 -2037 9 1019 1019 222 15 0 chr12 56912622 56912825 -64344705 + B3 SINE B2 9 214 -2 9 1019 200 255 0 0 chr12 56912886 56912937 -64344593 + G-rich Low_complexity Low_complexity 1 51 0 9 1019 183 42 0 0 chr12 56912968 56912992 -64344538 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1019 495 238 38 0 chr12 56912992 56913097 -64344433 - PB1D9 SINE Alu -11 109 1 9 1019 318 322 51 39 chr12 56913165 56913343 -64344187 + L1ME1 LINE L1 4464 4643 -1503 9 1019 1089 199 14 14 chr12 56913358 56913567 -64343963 - B3 SINE B2 -7 209 1 9 1019 315 276 28 37 chr12 56913567 56913676 -64343854 - PB1 SINE Alu -2 125 18 9 1019 409 276 86 99 chr12 56913720 56914187 -64343343 + L1ME1 LINE L1 4631 5091 -1055 9 1019 229 279 33 0 chr12 56914252 56914313 -64343217 - ID SINE ID -158 66 4 9 1019 1380 77 5 11 chr12 56914351 56914536 -64342994 + B2_Mm2 SINE B2 2 185 -10 9 1019 549 194 20 0 chr12 56914586 56914684 -64342846 + B3 SINE B2 117 216 0 9 1019 405 0 0 0 chr12 56914775 56914820 -64342710 + (TTA)n Simple_repeat Simple_repeat 1 45 0 9 1019 588 47 0 12 chr12 56914820 56914906 -64342624 - L1_Mus3 LINE L1 -16 6622 6538 9 1019 3904 101 10 8 chr12 56914906 56915525 -64342005 + L1_Mm LINE L1 4584 5203 -680 9 1019 223 28 56 0 chr12 56915620 56915656 -64341874 + (CAA)n Simple_repeat Simple_repeat 2 39 0 9 1019 381 297 261 9 chr12 56915707 56915924 -64341606 + B4A SINE B4 3 274 -18 9 1019 378 0 0 0 chr12 56915933 56915975 -64341555 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1019 955 86 1 9 chr12 56916041 56916191 -64341339 + B1_Mur4 SINE Alu 1 150 0 1 1019 394 288 34 77 chr12 56916191 56916244 -64341286 + B4A SINE B4 86 279 -13 1 1019 498 224 101 36 chr12 56916380 56916519 -64341011 - B1F SINE Alu 0 149 2 1 1019 285 283 185 36 chr12 56916520 56916931 -64340599 + L1ME1 LINE L1 5581 6039 -140 9 1019 414 187 13 13 chr12 56916990 56917066 -64340464 - ID4_ SINE ID -6 77 2 1 1019 305 172 40 79 chr12 56917409 56917458 -64340072 - BC1_Mm scRNA scRNA -8 144 98 1 1019 473 13 120 0 chr12 56917458 56917533 -64339997 - L1Md_F3 LINE L1 -1 6583 6500 1 1019 305 172 40 79 chr12 56917533 56917584 -64339946 - BC1_Mm scRNA scRNA -55 97 48 1 1019 261 0 0 0 chr12 56917662 56917691 -64339839 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1019 495 176 65 47 chr12 56917785 56917914 -64339616 - B1F1 SINE Alu -3 146 1 1 1019 222 200 0 32 chr12 56918001 56918016 -64339514 + T-rich Low_complexity Low_complexity 47 60 0 1 1019 1135 56 7 7 chr12 56918016 56918160 -64339370 - B1_Mus2 SINE Alu 0 147 4 1 1019 222 200 0 32 chr12 56918160 56918206 -64339324 + T-rich Low_complexity Low_complexity 1 46 0 1 1019 1190 62 0 0 chr12 56918206 56918352 -64339178 - B1_Mm SINE Alu 0 147 2 1 1019 21 0 0 0 chr12 56918362 56918383 -64339147 + AT_rich Low_complexity Low_complexity 1 21 0 1 1019 321 82 0 0 chr12 56918436 56918485 -64339045 + (CAGG)n Simple_repeat Simple_repeat 2 50 0 1 1019 874 231 0 141 chr12 56918488 56918522 -64339008 + B3 SINE B2 8 40 -176 1 1019 1325 91 37 0 chr12 56918522 56918709 -64338821 + B2_Mm2 SINE B2 2 195 0 1 1019 874 231 0 141 chr12 56918709 56918901 -64338629 + B3 SINE B2 41 202 -14 1 1019 297 128 0 0 chr12 56919300 56919347 -64338183 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1019 1089 82 0 39 chr12 56919347 56919500 -64338030 - B1_Mus1 SINE Alu 0 148 2 1 1019 204 135 0 26 chr12 56920078 56920116 -64337414 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1019 210 248 155 60 chr12 56920566 56920682 -64336848 + MIRc SINE MIR 136 262 -6 1 1019 198 0 0 0 chr12 56921262 56921284 -64336246 + (CTTTG)n Simple_repeat Simple_repeat 5 26 0 1 1019 24 0 0 0 chr12 56921608 56921632 -64335898 + GC_rich Low_complexity Low_complexity 1 24 0 1 1019 21 36 0 0 chr12 56921757 56921785 -64335745 + GC_rich Low_complexity Low_complexity 1 28 0 1 1019 205 206 16 16 chr12 56921846 56921910 -64335620 + (CCG)n Simple_repeat Simple_repeat 3 66 0 1 1019 234 81 0 0 chr12 56922916 56922953 -64334577 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 1 1019 456 291 30 60 chr12 56923092 56923130 -64334400 - B3 SINE B2 -6 210 179 1 1019 918 138 35 0 chr12 56923130 56923275 -64334255 - B1_Mur4 SINE Alu 0 150 1 1 1019 456 291 30 60 chr12 56923275 56923404 -64334126 - B3 SINE B2 -38 178 48 1 1019 240 204 0 0 chr12 56923372 56923416 -64334114 - tRNA-Ala-GCY_ tRNA tRNA -3 72 29 1 1019 517 274 25 64 chr12 56923422 56923625 -64333905 - B3A SINE B2 -3 195 1 1 1019 2262 137 36 13 chr12 56923833 56924218 -64333312 + ORR1B1 LTR MaLR 1 394 0 1 1019 189 147 0 0 chr12 56924582 56924616 -64332914 + (GGAGA)n Simple_repeat Simple_repeat 1 34 0 1 1019 735 149 29 29 chr12 56924814 56924952 -64332578 + B1_Mus2 SINE Alu 9 146 -1 1 1019 468 106 0 0 chr12 56924964 56925049 -64332481 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 1019 285 179 179 0 chr12 56925097 56925153 -64332377 + MTD LTR MaLR 18 83 -336 1 1019 999 176 184 5 chr12 56925158 56925381 -64332149 - MTC LTR MaLR -9 412 150 1 1019 900 101 29 0 chr12 56925387 56925525 -64332005 + URR1B DNA MER1_type 84 225 0 1 1019 459 151 35 11 chr12 56925525 56925607 -64331923 - MTC LTR MaLR -337 84 1 1 1019 1587 200 95 3 chr12 56925607 56925923 -64331607 + MTD LTR MaLR 75 419 0 1 1019 21 36 0 0 chr12 56925976 56926004 -64331526 + AT_rich Low_complexity Low_complexity 1 28 0 1 1019 891 78 247 32 chr12 56926121 56926279 -64331251 - B2_Mm2 SINE B2 -3 192 1 1 1019 394 168 0 118 chr12 56926430 56926633 -64330897 + (TTTA)n Simple_repeat Simple_repeat 1 179 0 1 1019 682 253 108 0 chr12 56926637 56926831 -64330699 - B3 SINE B2 0 216 2 1 1019 253 228 35 0 chr12 56927218 56927275 -64330255 - RMER15 LTR ERVL -114 461 403 1 1019 995 311 49 19 chr12 56927278 56927750 -64329780 - Lx8 LINE L1 -208 7265 6780 1 1019 1345 79 0 6 chr12 56927768 56927946 -64329584 + B2_Mm2 SINE B2 1 177 -18 1 1019 186 43 0 0 chr12 56927946 56927969 -64329561 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1019 627 304 67 11 chr12 56927992 56928261 -64329269 - RMER15-int LTR ERVL -272 4727 4444 1 1019 1352 209 93 10 chr12 56928262 56928649 -64328881 + Lx4B LINE L1 6619 7037 -21 1 1019 225 0 0 0 chr12 56928649 56928674 -64328856 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1019 544 206 106 48 chr12 56928695 56928884 -64328646 - Lx8 LINE L1 -951 6522 6323 1 1019 514 250 9 9 chr12 56928887 56928996 -64328534 - PB1D10 SINE Alu -8 109 1 1 1019 613 289 31 12 chr12 56929022 56929183 -64328347 - RSINE1 SINE B4 0 165 2 1 1019 297 0 0 0 chr12 56929561 56929594 -64327936 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 1 1019 462 241 9 9 chr12 56929595 56929704 -64327826 - PB1D9 SINE Alu -10 110 2 1 1019 597 294 57 0 chr12 56930254 56930465 -64327065 - ID_B1 SINE B4 -1 223 1 1 1019 633 312 164 52 chr12 56930474 56931029 -64326501 - Charlie1 DNA MER1_type -223 2558 1942 1 1019 194 331 105 33 chr12 56931178 56931331 -64326199 + L2b LINE L2 3208 3371 -4 1 1019 665 191 48 0 chr12 56931349 56931475 -64326055 - B1F SINE Alu -12 137 6 1 1019 216 196 0 21 chr12 56931509 56931556 -64325974 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1019 1265 254 15 4 chr12 56931571 56931836 -64325694 - B4A SINE B4 -12 280 13 1 1019 259 292 0 77 chr12 56931772 56931850 -64325680 - ID4_ SINE ID -9 74 3 1 1019 243 0 0 0 chr12 56931938 56931965 -64325565 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1019 568 232 31 19 chr12 56931969 56932104 -64325426 + B1F SINE Alu 2 140 -10 1 1019 218 250 21 0 chr12 56932288 56932336 -64325194 - PB1D9 SINE Alu -71 49 1 1 1019 553 238 116 21 chr12 56932380 56932569 -64324961 - Lx8 LINE L1 -324 5556 5350 1 1019 534 91 0 0 chr12 56932760 56932837 -64324693 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1019 22 0 0 0 chr12 56932979 56933001 -64324529 + AT_rich Low_complexity Low_complexity 1 22 0 1 1019 689 222 67 0 chr12 56933345 56933480 -64324050 + B1_Mus1 SINE Alu 5 148 0 1 1019 188 35 35 0 chr12 56933480 56933509 -64324021 + (CAAAAA)n Simple_repeat Simple_repeat 5 34 0 1 1019 405 0 0 0 chr12 56933548 56933593 -64323937 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1019 433 238 38 69 chr12 56933622 56933753 -64323777 + B1_Mur1 SINE Alu 5 131 -18 1 1019 294 95 0 0 chr12 56933755 56933797 -64323733 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1 1019 2319 148 57 12 chr12 56933988 56934391 -64323139 - MTC LTR MaLR 0 421 1 1 1019 539 307 76 33 chr12 56934407 56934683 -64322847 - B4A SINE B4 -2 290 3 1 1019 1092 66 0 7 chr12 56934796 56934934 -64322596 - B1_Mus2 SINE Alu -9 138 2 1 1019 371 284 21 10 chr12 56935013 56935109 -64322421 - B1F SINE Alu -52 97 1 1 1019 516 326 114 1 chr12 56935153 56935366 -64322164 + MIR SINE MIR 3 234 -34 1 1019 258 275 88 3 chr12 56935499 56935608 -64321922 + B1F1 SINE Alu 2 117 0 1 1019 263 371 37 15 chr12 56935627 56935761 -64321769 + MER102c DNA MER1_type 67 203 -128 1 1019 1192 85 138 54 chr12 56935975 56936199 -64321331 + ORR1A2 LTR MaLR 2 244 -83 1 1019 429 200 329 0 chr12 56936205 56936345 -64321185 + ORR1A1-int LTR MaLR 420 605 -1187 1 1019 473 245 31 0 chr12 56936299 56936397 -64321133 + MT2B LTR ERVL 157 257 -344 1 1019 400 245 128 0 chr12 56936313 56936407 -64321123 + B1_Mus2 SINE Alu 7 112 -35 1 1019 306 154 0 0 chr12 56936405 56936457 -64321073 - ORR1A3-int LTR MaLR -1478 485 434 1 1019 452 273 0 21 chr12 56938691 56938833 -64318697 + Lx8 LINE L1 7071 7209 -264 1 1019 233 193 35 0 chr12 56939739 56939796 -64317734 + T-rich Low_complexity Low_complexity 2 60 0 1 1019 606 243 23 6 chr12 56939820 56939994 -64317536 - B3A SINE B2 -19 179 3 1 1019 189 0 0 0 chr12 56940080 56940101 -64317429 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1019 1117 48 14 20 chr12 56940101 56940249 -64317281 - B1_Mus2 SINE Alu 0 147 1 1 1019 1511 48 11 0 chr12 56940535 56940722 -64316808 + B2_Mm1t SINE B2 2 190 -3 1 1019 693 81 24 0 chr12 56940739 56940862 -64316668 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 1019 479 179 118 29 chr12 56941118 56941253 -64316277 - B1_Mus2 SINE Alu 0 148 6 1 1019 625 186 108 8 chr12 56941533 56941663 -64315867 - B1_Mur1 SINE Alu 0 149 7 1 1019 290 290 83 48 chr12 56941541 56941686 -64315844 - B4A SINE B4 -72 220 71 1 1019 548 270 102 0 chr12 56941748 56941885 -64315645 - B3A SINE B2 -46 152 2 1 1019 315 321 30 28 chr12 56941856 56941990 -64315540 - PB1D10 SINE Alu -1 146 4 1 1019 220 359 0 0 chr12 56941934 56941998 -64315532 - B4A SINE B4 -148 144 81 1 1019 21 0 0 0 chr12 56942025 56942046 -64315484 + AT_rich Low_complexity Low_complexity 1 21 0 1 1019 595 229 19 89 chr12 56942369 56942527 -64315003 - ID_B1 SINE B4 0 224 78 1 1019 290 250 29 0 chr12 56942972 56943040 -64314490 - ID4 SINE ID -9 74 5 1 1019 401 258 36 36 chr12 56943040 56943176 -64314354 - B1F1 SINE Alu -12 137 1 1 1019 307 257 106 0 chr12 56943281 56943394 -64314136 - MIRc SINE MIR -48 220 96 1 1019 376 21 0 0 chr12 56943448 56943495 -64314035 - PB1D9 SINE Alu -73 47 1 1 1019 722 190 178 0 chr12 56943497 56943660 -64313870 - B3 SINE B2 -15 201 10 1 1019 735 236 55 0 chr12 56943657 56943822 -64313708 + MTD LTR MaLR 246 419 0 1 1019 255 272 118 11 chr12 56943824 56943917 -64313613 - PB1D10 SINE Alu -10 107 5 1 1019 337 287 89 0 chr12 56944160 56944261 -64313269 + PB1D7 SINE Alu 10 119 -1 1 1019 1334 77 27 11 chr12 56944276 56944460 -64313070 - B2_Mm2 SINE B2 -7 188 2 1 1019 297 234 87 35 chr12 56944577 56944692 -64312838 - B3A SINE B2 -7 209 89 1 1019 623 233 31 0 chr12 56944684 56944813 -64312717 + B1F SINE Alu 9 141 -8 1 1019 228 324 0 90 chr12 56946595 56946673 -64310857 - ID4 SINE ID -4 79 9 1 1019 1093 189 9 37 chr12 56947026 56947240 -64310290 - B3 SINE B2 -7 209 2 1 1019 623 13 0 13 chr12 56947288 56947365 -64310165 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 1 1019 612 221 55 0 chr12 56947366 56947493 -64310037 - B1_Mur1 SINE Alu -13 136 3 1 1019 426 221 47 19 chr12 56947523 56947629 -64309901 - PB1D10 SINE Alu -7 110 2 1 1019 488 199 92 35 chr12 56947834 56947975 -64309555 - B3 SINE B2 0 216 68 1 1019 280 304 169 19 chr12 56947993 56948312 -64309218 - L1MC4 LINE L1 -418 7624 7258 1 1019 1104 92 0 0 chr12 56948337 56948479 -64309051 - B1_Mus1 SINE Alu -5 143 2 1 1019 258 32 0 0 chr12 56948684 56948715 -64308815 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1019 287 289 26 0 chr12 56948725 56948801 -64308729 + CT-rich Low_complexity Low_complexity 2 79 0 1 1019 238 267 40 0 chr12 56948837 56948912 -64308618 - PB1 SINE Alu -49 78 1 1 1019 778 267 98 45 chr12 56949036 56949412 -64308118 - L1MA7 LINE L1 -301 5990 5595 1 1019 235 303 15 0 chr12 56949472 56949538 -64307992 - PB1D10 SINE Alu -20 97 31 1 1019 25 31 0 0 chr12 56949556 56949588 -64307942 + AT_rich Low_complexity Low_complexity 1 32 0 1 1019 815 226 72 18 chr12 56949673 56949962 -64307568 - ORR1D1 LTR MaLR 0 359 28 1 1019 1063 231 92 109 chr12 56949991 56950439 -64307091 - L1MA7 LINE L1 -166 6125 5686 1 1019 301 239 0 27 chr12 56950619 56950692 -64306838 + CT-rich Low_complexity Low_complexity 5 75 0 1 1019 486 226 122 0 chr12 56950698 56950813 -64306717 - B1F2 SINE Alu -20 129 1 1 1019 242 29 29 0 chr12 56950994 56951029 -64306501 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1019 1223 41 7 0 chr12 56951032 56951178 -64306352 - B1_Mus2 SINE Alu 0 147 1 1 1019 676 223 62 29 chr12 56951202 56951410 -64306120 - B3 SINE B2 0 216 2 1 1019 241 309 29 0 chr12 56951503 56951571 -64305959 - MIRc SINE MIR -142 126 57 1 1019 534 157 157 0 chr12 56951960 56952025 -64305505 + ID SINE ID 2 82 -142 1 1019 235 250 21 0 chr12 56952025 56952073 -64305457 + B1F1 SINE Alu 1 49 -100 1 1019 540 0 0 0 chr12 56952083 56952143 -64305387 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1019 594 320 19 47 chr12 56952308 56952564 -64304966 + B4A SINE B4 44 292 0 1 1019 242 276 66 0 chr12 56953430 56953506 -64304024 - ID_B1 SINE B4 -2 222 142 1 1019 203 268 23 23 chr12 56954220 56954308 -64303222 + CT-rich Low_complexity Low_complexity 1 88 0 1 1019 254 286 0 0 chr12 56954821 56954891 -64302639 - PB1D10 SINE Alu -7 110 41 1 1019 332 318 27 27 chr12 56955061 56955171 -64302359 - PB1D10 SINE Alu -7 110 1 1 1019 548 267 6 75 chr12 56955494 56955668 -64301862 - RSINE1 SINE B4 0 165 4 1 1019 606 230 43 7 chr12 56955683 56955823 -64301707 - ID_B1 SINE B4 -11 213 69 1 1019 230 248 34 84 chr12 56955732 56955851 -64301679 - MT2B LTR ERVL -361 240 128 1 1019 908 221 268 13 chr12 56956265 56956567 -64300963 + MTEb LTR MaLR 1 379 0 1 1019 1211 68 0 0 chr12 56956672 56956820 -64300710 - B1_Mus1 SINE Alu 0 148 1 1 1019 741 250 113 20 chr12 56956822 56957026 -64300504 - ID_B1 SINE B4 0 224 2 1 1019 287 163 0 0 chr12 56957036 56957085 -64300445 + RMER20B LTR ERVK 1 49 -578 1 1019 186 43 0 0 chr12 56957166 56957189 -64300341 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1019 869 134 12 0 chr12 56957204 56957348 -64300182 - B2_Mm2 SINE B2 -38 160 2 1 1019 506 189 11 0 chr12 56957401 56957491 -64300039 + B3 SINE B2 1 91 -125 1 1019 5517 67 29 8 chr12 56957493 56958276 -64299254 - RLTR13D3 LTR ERVK 0 1114 315 1 1019 530 127 14 9 chr12 56958269 56958376 -64299154 - RLTR13D3 LTR ERVK -612 196 88 1 1019 1135 274 14 0 chr12 56958561 56958846 -64298684 - B4A SINE B4 -2 290 2 1 1019 308 248 25 13 chr12 56959127 56959227 -64298303 + ID4 SINE ID 6 102 -50 1 1019 239 229 0 0 chr12 56959231 56959279 -64298251 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 1 1019 974 200 48 24 chr12 56959286 56959496 -64298034 + B3 SINE B2 1 215 -1 1 1019 247 355 0 28 chr12 56959648 56959790 -64297740 + ID_B1 SINE B4 78 215 -9 1 1019 255 208 19 19 chr12 56959811 56959865 -64297665 + ID4 SINE ID 12 65 -18 1 1019 300 260 27 0 chr12 56960188 56960261 -64297269 - ID4_ SINE ID -2 81 7 1 1019 589 214 124 28 chr12 56960512 56960690 -64296840 - B3A SINE B2 0 198 4 1 1019 269 243 43 0 chr12 56960809 56960879 -64296651 + ID4 SINE ID 1 73 -10 1 1019 512 269 19 25 chr12 56961756 56961916 -64295614 + RSINE1 SINE B4 6 164 -1 1 1019 392 188 25 0 chr12 56962263 56962343 -64295187 - PB1D10 SINE Alu -8 109 28 1 1019 4810 46 12 3 chr12 56962487 56963076 -64294454 - L1_Mus1 LINE L1 0 6567 5974 1 1019 207 260 0 0 chr12 56963296 56963346 -64294184 + L2a LINE L2 3377 3426 0 1 1019 211 150 25 0 chr12 56963435 56963475 -64294055 + T-rich Low_complexity Low_complexity 2 42 0 1 1019 246 301 38 19 chr12 56963475 56963580 -64293950 - B1F SINE Alu -27 122 16 1 1019 1389 74 32 0 chr12 56963610 56963799 -64293731 + B2_Mm2 SINE B2 1 195 0 1 1019 1181 56 0 0 chr12 56964358 56964502 -64293028 - B1_Mus1 SINE Alu 0 148 5 1 1019 190 0 85 43 chr12 56964785 56964832 -64292698 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1 1019 1175 48 7 0 chr12 56964845 56964991 -64292539 - B1_Mus2 SINE Alu 0 147 1 1 1019 315 0 0 0 chr12 56965169 56965204 -64292326 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1019 330 294 53 75 chr12 56965204 56965432 -64292098 - B4A SINE B4 0 292 70 1 1019 213 39 0 0 chr12 56965649 56965675 -64291855 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1019 474 33 0 0 chr12 56965680 56965740 -64291790 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 1 1019 479 288 36 7 chr12 56965745 56965885 -64291645 - RSINE1 SINE B4 -19 146 3 1 1019 229 363 48 0 chr12 56965900 56966024 -64291506 + L2b LINE L2 3222 3351 -24 1 1019 261 0 0 0 chr12 56966029 56966058 -64291472 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1 1019 640 301 13 36 chr12 56967444 56967603 -64289927 + ID_B1 SINE B4 4 165 -59 1 1019 1258 247 50 112 chr12 56967603 56968149 -64289381 - RLTR18B LTR ERVK 0 512 1 1 1019 640 301 13 36 chr12 56968149 56968213 -64289317 + ID_B1 SINE B4 166 222 -2 1 1019 381 260 206 6 chr12 56968270 56968440 -64289090 + B3 SINE B2 2 205 -11 1 1019 1293 14 0 0 chr12 56968517 56968662 -64288868 + B1_Mm SINE Alu 3 147 0 1 1019 207 0 0 0 chr12 56968670 56968693 -64288837 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1019 22 0 0 0 chr12 56970625 56970647 -64286883 + AT_rich Low_complexity Low_complexity 1 22 0 1 1019 2900 158 31 41 chr12 56971013 56971553 -64285977 - Lx3C LINE L1 -207 6769 6235 1 1019 4524 135 56 0 chr12 56971545 56972273 -64285257 + L1_Mur1 LINE L1 4464 5232 -654 1 1019 348 273 94 0 chr12 56972584 56972712 -64284818 + ID_B1 SINE B4 84 223 -1 1 1019 511 196 0 0 chr12 56973140 56973232 -64284298 - B3A SINE B2 -104 94 3 1 1019 1019 107 0 0 chr12 56973341 56973491 -64284039 - ORR1B1 LTR MaLR -5 389 240 1 1019 509 198 18 18 chr12 56974222 56974335 -64283195 - B1_Mur1 SINE Alu 0 149 37 1 1019 200 259 0 0 chr12 56974622 56974676 -64282854 + CT-rich Low_complexity Low_complexity 1 54 0 1 1019 289 154 321 27 chr12 56974676 56974788 -64282742 - B2_Mm2 SINE B2 0 195 51 1 1019 1196 62 0 0 chr12 56974835 56974980 -64282550 - B1_Mus2 SINE Alu -1 146 2 1 1019 1176 116 35 0 chr12 56974983 56975156 -64282374 - B2_Mm1t SINE B2 -14 179 1 1 1019 1655 152 50 27 chr12 56975502 56975839 -64281691 + ORR1B1 LTR MaLR 41 385 -9 1 1019 308 318 57 38 chr12 56975871 56976033 -64281497 - L1MC LINE L1 -2228 5654 5492 1 1019 257 270 186 17 chr12 56976378 56976555 -64280975 + MIR SINE MIR 29 235 -27 1 1019 1372 90 0 21 chr12 56976602 56976795 -64280735 - B2_Mm2 SINE B2 -6 189 1 1 1019 6121 186 35 22 chr12 56976917 56977115 -64280415 - Lx7 LINE L1 -285 7411 7220 1 1019 2274 158 10 26 chr12 56977115 56977499 -64280031 - ORR1C1 LTR MaLR 0 378 1 1 1019 6121 186 35 22 chr12 56977499 56978506 -64279024 - Lx7 LINE L1 -477 7219 6191 1 1019 7714 56 11 24 chr12 56978504 56978690 -64278840 - MusHAL1 LINE L1 0 2712 2527 1 1019 3670 58 45 14 chr12 56978690 56979009 -64278521 - RLTR44C LTR ERVK 0 502 175 1 1019 557 14 14 0 chr12 56979009 56979079 -64278451 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1019 3670 58 45 14 chr12 56979079 56979246 -64278284 - RLTR44C LTR ERVK -328 174 3 1 1019 7714 56 11 24 chr12 56979246 56980098 -64277432 - MusHAL1 LINE L1 -186 2526 1687 1 1019 16429 72 26 4 chr12 56980090 56982423 -64275107 - L1VL4 LINE L1 -366 3193 811 1 1019 297 0 0 0 chr12 56982423 56982456 -64275074 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1019 5445 81 21 4 chr12 56982456 56983030 -64274500 - L1VL4 LINE L1 -5492 810 234 1 1019 2221 193 65 80 chr12 56983035 56983633 -64273897 - Lx7 LINE L1 -1499 6197 5609 1 1019 1219 308 34 13 chr12 56983858 56984306 -64273224 + RMER1C Other Other 362 818 -524 1 1019 3890 226 32 58 chr12 56984306 56985295 -64272235 + RMER1C Other Other 375 1338 -4 1 1019 1107 52 7 0 chr12 56985308 56985443 -64272087 + B1_Mus2 SINE Alu 2 137 -10 1 1019 329 0 0 24 chr12 56985444 56985486 -64272044 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1019 256 311 102 62 chr12 56985513 56985845 -64271685 + MER90a LTR ERV1 221 609 -5 1 1019 396 246 167 0 chr12 56985869 56985983 -64271547 - B3A SINE B2 -64 134 2 1 1019 698 253 0 7 chr12 56986035 56986186 -64271344 - RSINE1 SINE B4 -13 152 3 1 1019 219 321 94 0 chr12 56986188 56986294 -64271236 - PB1D10 SINE Alu 0 117 2 1 1019 523 220 37 0 chr12 56987145 56987254 -64270276 - PB1D10 SINE Alu -2 115 3 1 1019 219 255 0 0 chr12 56987802 56987849 -64269681 - RSINE1 SINE B4 -117 48 2 1 1019 319 85 51 0 chr12 56988016 56988075 -64269455 + (TATG)n Simple_repeat Simple_repeat 3 64 0 1 1019 419 336 17 0 chr12 56988076 56988195 -64269335 - RSINE1 SINE B4 -43 122 2 1 1019 671 279 16 11 chr12 56988284 56988469 -64269061 + B3 SINE B2 1 186 -30 1 1019 3457 152 58 12 chr12 56988625 56989216 -64268314 - Lx LINE L1 -20 6634 6017 1 1019 195 206 92 31 chr12 56989383 56989448 -64268082 - L3 LINE CR1 -315 4174 4106 1 1019 211 0 88 0 chr12 56989648 56989682 -64267848 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1 1019 775 221 53 5 chr12 56990284 56990471 -64267059 - MT2A LTR ERVL -337 196 1 1 1019 406 274 0 57 chr12 56990537 56990661 -64266869 + PB1D10 SINE Alu 1 117 0 1 1019 51 65 0 0 chr12 56990661 56990754 -64266776 + AT_rich Low_complexity Low_complexity 1 93 0 1 1019 1182 68 0 7 chr12 56991002 56991151 -64266379 - B1_Mus1 SINE Alu 0 148 1 1 1019 482 243 7 120 chr12 56991347 56991577 -64265953 + B3A SINE B2 1 197 -1 1 1019 595 279 110 55 chr12 56991596 56991888 -64265642 - MER63C DNA AcHobo -343 587 280 1 1019 504 236 122 11 chr12 56992125 56992313 -64265217 - MER63C DNA AcHobo -718 212 4 1 1019 447 310 47 51 chr12 56992422 56992636 -64264894 + Tigger5 DNA MER2_type 78 290 -2116 1 1019 323 297 62 0 chr12 56992646 56992774 -64264756 + Tigger5 DNA MER2_type 2198 2333 -73 1 1019 296 186 56 93 chr12 56992928 56992940 -64264590 - MT2B LTR ERVL -329 272 225 1 1019 440 179 71 0 chr12 56992940 56993024 -64264506 - B1_Mus1 SINE Alu -43 105 16 1 1019 296 186 56 93 chr12 56993024 56993035 -64264495 - MT2B LTR ERVL -329 224 170 1 1019 653 273 189 44 chr12 56993059 56993075 -64264455 - L1MD1 LINE L1 -191 6051 6036 1 1019 6624 89 26 2 chr12 56993075 56994002 -64263528 + Lx2A1 LINE L1 6058 7006 -2 1 1019 653 273 189 44 chr12 56994002 56994321 -64263209 - L1MD1 LINE L1 -207 6035 5683 1 1019 486 0 0 0 chr12 56994321 56994375 -64263155 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1019 653 273 189 44 chr12 56994375 56994513 -64263017 - L1MD1 LINE L1 -560 5682 5508 1 1019 404 229 30 30 chr12 56994547 56994646 -64262884 - PB1D10 SINE Alu -5 112 14 1 1019 840 129 0 0 chr12 56994880 56995012 -64262518 + RMER10B LTR ERVL 1 132 -266 1 1019 495 247 0 0 chr12 56995140 56995237 -64262293 - Lx9 LINE L1 -789 6855 6759 1 1019 233 269 58 29 chr12 56995453 56995522 -64262008 + PB1D10 SINE Alu 40 110 -7 1 1019 234 0 0 0 chr12 56995530 56995556 -64261974 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1019 584 313 53 0 chr12 56995576 56995726 -64261804 - RSINE1 SINE B4 -4 161 4 1 1019 226 296 42 0 chr12 56995753 56995824 -64261706 + ID4_ SINE ID 5 78 -5 1 1019 890 205 48 5 chr12 56996170 56996376 -64261154 - B3 SINE B2 -1 215 1 1 1019 2762 77 8 0 chr12 56996463 56996852 -64260678 - MTB LTR MaLR 0 400 9 1 1019 655 188 0 0 chr12 56996860 56996988 -64260542 - L1MDa LINE L1 -5506 1127 1000 1 1019 395 275 60 22 chr12 56997071 56997205 -64260325 - L1MDa LINE L1 -5756 877 739 1 1019 715 278 185 64 chr12 56997221 56997594 -64259936 + MTD LTR MaLR 1 418 -1 1 1019 270 0 0 0 chr12 56998059 56998089 -64259441 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1019 249 276 78 39 chr12 56998817 56998919 -64258611 - B4 SINE B4 -184 108 3 1 1019 882 269 77 32 chr12 56998982 56999293 -64258237 + MTE2a LTR MaLR 11 335 -44 1 1019 683 150 8 8 chr12 56999447 56999575 -64257955 + RMER6B LTR ERVK 320 447 -14 1 1019 2208 135 5 15 chr12 56999580 56999617 -64257913 + RMER6A LTR ERVK 22 58 -698 1 1019 249 33 0 0 chr12 56999617 56999647 -64257883 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 1019 2208 135 5 15 chr12 56999647 57000000 -64257530 + RMER6A LTR ERVK 59 408 -348 1 1019 1573 123 153 0 chr12 57000000 57000300 -64257230 + RMER6A LTR ERVK 409 754 -2 1 1019 241 245 0 20 chr12 57000328 57000378 -64257152 - RSINE1 SINE B4 -114 51 3 2 1019 255 207 0 33 chr12 57000378 57000436 -64257094 + MTE2b LTR MaLR 324 379 0 3 1019 601 296 46 46 chr12 57000726 57000921 -64256609 - RMER30 DNA MER1_type 0 202 8 4 1019 948 253 68 34 chr12 57000926 57001163 -64256367 - MTE2b LTR MaLR -52 327 83 5 1019 2316 158 79 5 chr12 57001162 57001581 -64255949 - RMER4B LTR ERVK -118 467 18 6 1019 700 161 78 71 chr12 57001567 57001721 -64255809 - ORR1B1 LTR MaLR -239 155 1 7 1019 1531 273 24 11 chr12 57001774 57002148 -64255382 - MTE2b LTR MaLR 0 379 1 8 1019 285 51 0 0 chr12 57002523 57002562 -64254968 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 9 1019 1160 76 14 0 chr12 57002563 57002708 -64254822 - B1_Mus2 SINE Alu 0 147 1 1 1019 222 265 0 0 chr12 57002877 57002926 -64254604 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1019 1736 161 43 10 chr12 57003078 57003379 -64254151 - RLTR10E LTR ERVK 0 311 1 1 1019 785 213 161 0 chr12 57003486 57003660 -64253870 + B3 SINE B2 1 202 -14 1 1019 465 279 180 36 chr12 57004361 57004791 -64252739 - MLT1E2 LTR MaLR -9 496 3 1 1019 238 336 84 0 chr12 57004800 57004907 -64252623 - MLT1E2-int LTR MaLR -1 1370 1255 1 1019 183 156 0 0 chr12 57005043 57005075 -64252455 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1019 2189 59 69 0 chr12 57005526 57005815 -64251715 - Lx LINE L1 -611 6043 5735 1 1019 425 237 8 106 chr12 57005822 57005954 -64251576 - RLTR28B LTR ERVL -235 246 128 1 1019 759 265 7 0 chr12 57006062 57006213 -64251317 + B3 SINE B2 16 167 -49 1 1019 1211 68 0 20 chr12 57006388 57006538 -64250992 - B1_Mm SINE Alu 0 147 1 1 1019 234 245 19 0 chr12 57006718 57006771 -64250759 + L1MA10 LINE L1 6218 6271 -63 2 1019 2256 147 37 16 chr12 57006785 57007159 -64250371 - ORR1C2 LTR MaLR -2 382 1 2 1019 680 262 0 0 chr12 57008690 57008831 -64248699 + B1F SINE Alu 2 142 -7 2 1019 471 35 0 0 chr12 57008979 57009036 -64248494 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1019 539 327 82 79 chr12 57009116 57009556 -64247974 + MLT1E1A LTR MaLR 67 526 -154 2 1019 1230 177 17 52 chr12 57009748 57009980 -64247550 + URR1B DNA MER1_type 2 225 0 2 1019 23 54 0 0 chr12 57010702 57010739 -64246791 + AT_rich Low_complexity Low_complexity 1 37 0 2 1019 709 136 19 0 chr12 57011807 57011910 -64245620 - U6 snRNA snRNA 0 107 3 2 1019 338 240 69 20 chr12 57012040 57012142 -64245388 + PB1D10 SINE Alu 1 107 -10 2 1019 1104 120 108 6 chr12 57012456 57012632 -64244898 - B2_Mm2 SINE B2 0 195 2 2 1019 398 277 0 0 chr12 57012981 57013075 -64244455 + ID_B1 SINE B4 104 197 -27 3 1019 232 308 80 18 chr12 57013286 57013439 -64244091 + MIRm SINE MIR 17 177 -91 3 1019 199 271 158 0 chr12 57013742 57013830 -64243700 - MIR SINE MIR -90 186 86 3 1019 22 0 0 0 chr12 57014145 57014167 -64243363 + AT_rich Low_complexity Low_complexity 1 22 0 3 1019 360 0 0 0 chr12 57014784 57014824 -64242706 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1019 333 155 0 0 chr12 57015076 57015134 -64242396 + (CAG)n Simple_repeat Simple_repeat 2 59 0 3 1019 603 40 0 0 chr12 57015813 57015887 -64241643 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 3 127 321 202 63 0 chr12 57016263 57016342 -64241188 - Tigger7 DNA MER2_type -1453 1038 955 3 1020 509 273 263 22 chr12 57016346 57016604 -64240926 - Tigger7 DNA MER2_type -2169 322 3 3 1020 243 176 10 158 chr12 57017866 57018069 -64239461 + (CACCT)n Simple_repeat Simple_repeat 4 176 0 3 1020 1143 115 0 0 chr12 57018912 57019060 -64238470 - B1_Mus1 SINE Alu 0 148 1 3 1020 189 0 0 0 chr12 57019072 57019093 -64238437 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1020 221 0 35 0 chr12 57019132 57019161 -64238369 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4 1020 1215 64 0 25 chr12 57019161 57019322 -64238208 - B2_Mm1a SINE B2 -35 158 2 4 1020 523 248 18 0 chr12 57019434 57019547 -64237983 - PB1D10 SINE Alu 0 117 3 4 1020 839 37 9 0 chr12 57020570 57020677 -64236853 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 4 1020 526 213 12 6 chr12 57020677 57020842 -64236688 + CT-rich Low_complexity Low_complexity 4 169 0 4 1020 853 246 93 34 chr12 57021006 57021242 -64236288 + MTD LTR MaLR 19 268 -151 4 1020 665 222 80 15 chr12 57022142 57022279 -64235251 + B1_Mur3 SINE Alu 3 148 -1 4 1020 209 158 53 0 chr12 57022282 57022302 -64235228 + (CAAAC)n Simple_repeat Simple_repeat 5 27 0 4 1020 486 33 0 0 chr12 57022302 57022362 -64235168 + (CAA)n Simple_repeat Simple_repeat 2 61 0 4 1020 210 143 0 0 chr12 57022362 57022399 -64235131 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 5 1020 242 300 53 26 chr12 57023152 57023265 -64234265 - RMER4B LTR ERVK -456 129 14 5 1020 342 267 19 38 chr12 57023343 57023448 -64234082 + Lx8 LINE L1 5815 5917 -1556 5 1020 215 189 0 19 chr12 57023474 57023528 -64234002 + CT-rich Low_complexity Low_complexity 1 53 0 5 1020 192 94 37 19 chr12 57023752 57023806 -64233724 + (CAAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1020 1144 251 15 19 chr12 57023845 57024105 -64233425 + B4A SINE B4 5 263 -29 5 1020 489 17 0 0 chr12 57024158 57024216 -64233314 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1020 262 301 90 7 chr12 57024241 57024385 -64233145 - Charlie7 DNA MER1_type -927 1685 1530 5 1020 315 200 43 76 chr12 57024381 57024473 -64233057 - BC1_Mm scRNA scRNA -62 90 2 5 1020 252 250 266 21 chr12 57024580 57024674 -64232856 + MTD LTR MaLR 264 380 -39 4 1020 320 361 65 44 chr12 57025081 57025310 -64232220 - Charlie7 DNA MER1_type -2374 238 5 5 1020 709 172 21 50 chr12 57025410 57025551 -64231979 - RMER1B Other Other -277 789 653 5 1020 513 165 112 9 chr12 57025575 57025691 -64231839 + RMER1B Other Other 929 1056 -10 6 1020 423 0 0 0 chr12 57025835 57025882 -64231648 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1020 217 367 31 0 chr12 57025931 57026029 -64231501 + L3 LINE CR1 4275 4375 -114 6 1020 619 82 0 35 chr12 57026619 57026733 -64230797 + (TCTCTG)n Simple_repeat Simple_repeat 5 114 0 6 1020 483 317 40 16 chr12 57026733 57026858 -64230672 - PB1D10 SINE Alu -21 128 1 6 1020 184 305 82 35 chr12 57026945 57027030 -64230500 - MIRc SINE MIR -179 89 1 6 1020 273 57 0 0 chr12 57027263 57027298 -64230232 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 1020 23 0 0 0 chr12 57028665 57028688 -64228842 + AT_rich Low_complexity Low_complexity 1 23 0 6 1020 745 258 25 62 chr12 57029102 57029314 -64228216 + B4A SINE B4 66 290 -2 6 1020 272 226 11 0 chr12 57029314 57029407 -64228123 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 1020 380 268 92 10 chr12 57029457 57029555 -64227975 - PB1D10 SINE Alu 0 117 12 7 1020 784 87 40 23 chr12 57030172 57030277 -64227253 + (TC)n Simple_repeat Simple_repeat 1 102 0 7 1020 1123 0 0 68 chr12 57030277 57030467 -64227063 + (TCTCC)n Simple_repeat Simple_repeat 1 177 0 7 1020 925 0 85 0 chr12 57030467 57030660 -64226870 + (TCTCCC)n Simple_repeat Simple_repeat 1 209 0 7 1020 1372 45 0 11 chr12 57030660 57030842 -64226688 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 7 1020 486 0 0 0 chr12 57030844 57030898 -64226632 + (TTTCC)n Simple_repeat Simple_repeat 5 58 0 7 1020 644 258 19 56 chr12 57031250 57031410 -64226120 + B3 SINE B2 1 154 -62 7 1020 231 36 0 0 chr12 57032075 57032103 -64225427 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 7 1020 21 82 0 0 chr12 57032135 57032184 -64225346 + AT_rich Low_complexity Low_complexity 1 49 0 7 1020 266 296 71 10 chr12 57032635 57032734 -64224796 + MLT1A LTR MaLR 29 133 -241 7 1020 495 200 0 0 chr12 57033350 57033430 -64224100 - ID_B1 SINE B4 -20 204 125 8 1020 1583 117 9 26 chr12 57034070 57034299 -64223231 + URR1A DNA MER1_type 2 226 0 8 1020 1708 146 42 73 chr12 57035259 57035613 -64221917 + RMER1C Other Other 999 1341 -1 8 1020 405 281 172 8 chr12 57035813 57035935 -64221595 - B3 SINE B2 -58 158 17 8 1020 22 0 0 0 chr12 57035984 57036006 -64221524 + AT_rich Low_complexity Low_complexity 1 22 0 8 1020 201 108 0 0 chr12 57036531 57036568 -64220962 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1020 231 306 76 7 chr12 57036651 57036796 -64220734 - L1MC4 LINE L1 -537 7505 7351 8 1020 320 300 12 0 chr12 57036864 57036944 -64220586 + ID4_ SINE ID 2 82 -1 8 1020 401 291 43 70 chr12 57037043 57037228 -64220302 - Lx8 LINE L1 -8 7465 7286 8 1020 256 246 58 0 chr12 57037298 57037367 -64220163 - MLT1B LTR MaLR -15 375 303 8 1020 343 155 39 10 chr12 57037433 57037537 -64219993 + GA-rich Low_complexity Low_complexity 3 109 0 9 1020 501 273 54 70 chr12 57037545 57037581 -64219949 - MLT1B LTR MaLR -208 182 149 8 1020 6047 54 6 0 chr12 57037581 57038287 -64219243 + L1Md_F2 LINE L1 5871 6580 -2 9 1020 501 273 54 70 chr12 57038287 57038435 -64219095 - MLT1B LTR MaLR -242 148 2 8 1020 475 56 0 27 chr12 57038552 57038625 -64218905 + (TATG)n Simple_repeat Simple_repeat 4 74 0 9 1020 336 271 27 45 chr12 57038744 57038856 -64218674 - B4A SINE B4 -181 111 2 9 1020 871 235 102 5 chr12 57038874 57039071 -64218459 - B3 SINE B2 0 216 1 9 1020 415 226 12 0 chr12 57039079 57039163 -64218367 - B1F SINE Alu -8 141 57 9 1020 1538 73 21 0 chr12 57039418 57039609 -64217921 - B2_Mm2 SINE B2 0 195 1 9 1020 22 0 0 0 chr12 57039617 57039639 -64217891 + AT_rich Low_complexity Low_complexity 1 22 0 9 1020 189 0 0 0 chr12 57040618 57040639 -64216891 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1020 230 114 23 0 chr12 57041279 57041323 -64216207 + Lx3_Mus LINE L1 6957 7001 -8 9 1020 337 244 122 0 chr12 57041414 57041496 -64216034 + MLT1B LTR MaLR 1 92 -298 1 1020 1009 24 0 0 chr12 57042238 57042362 -64215168 + B1_Mus2 SINE Alu 2 125 -22 1 1020 627 270 80 6 chr12 57042364 57042539 -64214991 + B3 SINE B2 8 195 -21 1 1020 796 213 127 46 chr12 57042563 57042760 -64214770 - B3 SINE B2 -2 214 2 1 1020 210 127 111 127 chr12 57042835 57042898 -64214632 - B2_Mm2 SINE B2 -125 70 9 1 1020 442 142 377 0 chr12 57042941 57043047 -64214483 + B1_Mus1 SINE Alu 3 148 0 1 1020 213 121 0 0 chr12 57043174 57043207 -64214323 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1020 264 167 0 0 chr12 57043213 57043261 -64214269 + (ATG)n Simple_repeat Simple_repeat 3 50 0 1 1020 285 358 40 32 chr12 57043288 57043412 -64214118 - RSINE1 SINE B4 -31 134 10 1 1020 272 325 175 36 chr12 57043582 57043834 -64213696 - L4 LINE RTE -1 2028 1742 1 1020 1345 146 51 9 chr12 57044324 57044539 -64212991 + URR1B DNA MER1_type 2 225 0 1 1020 226 218 18 0 chr12 57044606 57044661 -64212869 - MTE2a LTR MaLR -321 58 3 1 1020 4635 131 1 0 chr12 57045039 57045720 -64211810 - Lx2 LINE L1 -95 5788 5107 1 1020 8067 100 74 15 chr12 57045720 57046892 -64210638 + Lx2 LINE L1 5754 6994 -3 1 1020 268 192 213 37 chr12 57046921 57047029 -64210501 - L1MB7 LINE L1 -25 6159 6033 1 1020 1864 28 14 5 chr12 57047064 57047282 -64210248 - L1Md_F3 LINE L1 -1 6583 6364 1 1020 234 199 35 79 chr12 57047282 57047484 -64210046 - RMER17C LTR ERVK -138 272 80 1 1020 243 191 20 54 chr12 57047484 57047570 -64209960 + GA-rich Low_complexity Low_complexity 1 83 0 1 1020 315 0 0 0 chr12 57047817 57047852 -64209678 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1020 414 301 168 60 chr12 57047872 57047975 -64209555 - L1MA4 LINE L1 -374 5926 5781 1 1020 1230 68 0 14 chr12 57047975 57048123 -64209407 - B1_Mus1 SINE Alu 0 148 3 1 1020 427 292 223 59 chr12 57048123 57048481 -64209049 - L1MA4 LINE L1 -100 5780 5356 1 1020 358 283 66 90 chr12 57048497 57048664 -64208866 - B4A SINE B4 0 165 3 1 1020 240 270 67 0 chr12 57048683 57048772 -64208758 - L1M2 LINE L1 -916 5381 5287 1 1020 393 22 0 0 chr12 57048810 57048856 -64208674 + (ATGTG)n Simple_repeat Simple_repeat 5 50 0 1 1020 730 286 75 12 chr12 57048871 57049126 -64208404 - B4A SINE B4 -20 272 2 1 1020 691 280 101 14 chr12 57049184 57049532 -64207998 - L1M2 LINE L1 -874 5269 4892 1 1020 3829 150 123 23 chr12 57049551 57050281 -64207249 + RMER21B LTR ERV1 40 842 0 1 1020 1146 276 50 39 chr12 57050282 57050746 -64206784 - L1M2 LINE L1 -1248 4895 4427 1 1020 454 199 208 1 chr12 57050759 57050923 -64206607 - L1MB7 LINE L1 -155 6019 5825 1 1020 25 0 0 0 chr12 57050945 57050970 -64206560 + AT_rich Low_complexity Low_complexity 1 25 0 1 1020 306 0 0 0 chr12 57050998 57051032 -64206498 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1020 261 0 0 0 chr12 57051032 57051060 -64206470 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1020 246 443 28 11 chr12 57051096 57051274 -64206256 - L4 LINE RTE -792 1237 1057 1 1020 224 374 77 16 chr12 57051392 57051574 -64205956 + L2 LINE L2 2392 2584 -835 1 1020 318 377 49 0 chr12 57051690 57051812 -64205718 - L2b LINE L2 -14 3361 3234 1 1020 1043 242 24 27 chr12 57051931 57052228 -64205302 - Lx7 LINE L1 -1689 6007 5712 1 1020 876 295 132 0 chr12 57052765 57053023 -64204507 + B4 SINE B4 1 292 0 1 1020 707 204 8 8 chr12 57053257 57053390 -64204140 + B1_Mur2 SINE Alu 6 138 -11 1 1020 180 77 0 0 chr12 57053390 57053416 -64204114 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1020 289 119 0 0 chr12 57054206 57054248 -64203282 + RMER6C LTR ERVK 1 42 -678 1 1020 485 162 70 139 chr12 57054255 57054342 -64203188 + MT2B LTR ERVL 181 259 -342 1 1020 265 174 0 115 chr12 57054342 57054394 -64203136 + PB1D9 SINE Alu 3 48 -72 1 1020 1909 127 51 18 chr12 57054424 57054760 -64202770 + RMER6C LTR ERVK 344 690 0 1 1020 234 275 29 0 chr12 57054813 57054882 -64202648 + ID4_ SINE ID 2 72 -11 1 1020 253 271 48 117 chr12 57054977 57055227 -64202303 - RLTR41 LTR ERV1 -45 519 191 1 1020 340 318 140 0 chr12 57055736 57055843 -64201687 - B1F2 SINE Alu -27 122 1 1 1020 365 295 45 23 chr12 57055884 57056016 -64201514 - MTE-int LTR MaLR -1077 503 369 1 1020 550 280 53 0 chr12 57056044 57056176 -64201354 + RSINE1 SINE B4 11 149 -16 1 1020 697 288 16 5 chr12 57056228 57056413 -64201117 - MTE-int LTR MaLR -1203 377 191 1 1020 182 36 86 35 chr12 57057069 57057127 -64200403 + (TTA)n Simple_repeat Simple_repeat 3 63 0 1 1020 926 286 46 10 chr12 57057377 57057765 -64199765 - L1MEg LINE L1 -4608 1476 1075 1 1020 1094 282 70 29 chr12 57057922 57058265 -64199265 + MTE2a LTR MaLR 9 365 -14 1 1020 468 262 0 36 chr12 57058307 57058418 -64199112 - ID_B1 SINE B4 -30 194 88 1 1020 404 324 34 29 chr12 57058467 57058642 -64198888 - B4A SINE B4 -1 291 116 1 1020 583 312 0 0 chr12 57058733 57058877 -64198653 - B1F2 SINE Alu -3 146 3 1 1020 785 285 84 84 chr12 57059293 57059520 -64198010 + L1ME2 LINE L1 5473 5727 -437 1 1020 1011 243 5 9 chr12 57059520 57059732 -64197798 - B3 SINE B2 -5 211 1 1 1020 785 285 84 84 chr12 57059732 57059882 -64197648 + L1ME2 LINE L1 5728 5852 -312 1 1020 2519 83 14 35 chr12 57059882 57060030 -64197500 + Lx2 LINE L1 6657 6804 -193 1 1020 2898 90 88 0 chr12 57060030 57060228 -64197302 - BGLII_Mus LTR ERVK 0 422 221 1 1020 636 14 0 0 chr12 57060228 57060301 -64197229 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 1020 2898 90 88 0 chr12 57060301 57060490 -64197040 - BGLII_Mus LTR ERVK -202 220 3 1 1020 2519 83 14 35 chr12 57060490 57060689 -64196841 + Lx2 LINE L1 6805 6997 0 1 1020 785 303 73 79 chr12 57060689 57061005 -64196525 + L1ME2 LINE L1 5853 6160 -19 1 1020 336 176 74 157 chr12 57063385 57063506 -64194024 - RSINE1 SINE B4 -35 130 20 1 1020 4218 91 5 0 chr12 57063502 57064076 -64193454 + MT2B2 LTR ERVL 8 584 0 1 1020 336 245 11 11 chr12 57064720 57064815 -64192715 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1020 438 356 40 29 chr12 57065501 57065718 -64191812 + MIR SINE MIR 21 239 -29 1 1020 185 261 17 17 chr12 57065852 57065969 -64191561 + (TA)n Simple_repeat Simple_repeat 2 118 0 1 1020 480 125 0 0 chr12 57066107 57066203 -64191327 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1 1020 252 86 0 0 chr12 57066204 57066239 -64191291 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1020 1013 265 71 16 chr12 57066242 57066495 -64191035 - B4A SINE B4 -23 269 3 1 1020 23283 67 2 1 chr12 57066866 57069835 -64187695 + L1Md_F3 LINE L1 2615 5586 -297 1 1020 9017 28 6 0 chr12 57069835 57070827 -64186703 + L1Md_F3 LINE L1 5587 6584 0 1 1020 789 32 0 0 chr12 57070891 57070986 -64186544 + B2_Mm2 SINE B2 1 95 -100 1 1020 306 0 0 0 chr12 57070987 57071021 -64186509 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1020 2776 102 16 3 chr12 57071035 57071420 -64186110 + Lx3A LINE L1 6569 6958 -23 1 1020 1426 58 0 0 chr12 57071435 57071606 -64185924 + L1Md_F2 LINE L1 6172 6342 -240 1 1020 202 222 0 0 chr12 57071846 57071882 -64185648 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 1 1020 441 332 141 0 chr12 57071895 57072094 -64185436 - MIR SINE MIR -17 245 19 1 1020 1173 78 0 0 chr12 57072531 57072710 -64184820 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1020 247 255 103 47 chr12 57072756 57072863 -64184667 + MER5A1 DNA MER1_type 2 114 -52 1 1020 297 37 36 36 chr12 57072866 57072922 -64184608 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 1020 738 328 64 12 chr12 57072995 57073418 -64184112 + Lx9 LINE L1 7080 7524 -120 1 1020 39 0 0 0 chr12 57073514 57073553 -64183977 + AT_rich Low_complexity Low_complexity 1 39 0 1 1020 23 0 0 0 chr12 57074088 57074111 -64183419 + AT_rich Low_complexity Low_complexity 1 23 0 1 1020 4204 55 0 8 chr12 57074639 57075134 -64182396 + L1Md_F3 LINE L1 6080 6570 -14 1 1020 763 254 6 0 chr12 57075784 57075953 -64181577 - B3A SINE B2 -28 170 1 1 1020 288 271 29 0 chr12 57076272 57076342 -64181188 - ID2 SINE ID -10 73 2 1 1020 1657 309 98 44 chr12 57076345 57077322 -64180208 + Lx8 LINE L1 5671 6700 -773 1 1020 1720 92 111 0 chr12 57077322 57077584 -64179946 + ORR1A3 LTR MaLR 1 291 -35 1 1020 1442 62 6 6 chr12 57077584 57077761 -64179769 + B2_Mm2 SINE B2 1 177 -18 1 1020 597 160 0 0 chr12 57077761 57077867 -64179663 + (TA)n Simple_repeat Simple_repeat 2 107 0 1 1020 227 273 24 61 chr12 57077868 57077950 -64179580 - RMER19A LTR ERVK -209 528 450 1 1020 581 242 52 15 chr12 57078370 57078504 -64179026 + B1F2 SINE Alu 1 139 -10 1 1020 327 85 0 0 chr12 57078512 57078559 -64178971 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 1 1020 806 235 26 36 chr12 57080101 57080295 -64177235 - B3A SINE B2 0 198 7 1 1020 6884 69 23 14 chr12 57080376 57081307 -64176223 - L1Md_F2 LINE L1 -1 6581 5643 1 1020 2324 197 58 21 chr12 57081687 57082206 -64175324 + RMER15 LTR ERVL 38 575 0 1 1020 662 310 87 48 chr12 57082227 57082562 -64174968 + MLT1A0 LTR MaLR 18 365 0 1 1020 180 0 0 0 chr12 57082787 57082807 -64174723 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1020 207 0 0 0 chr12 57082812 57082835 -64174695 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1020 423 98 0 0 chr12 57082965 57083026 -64174504 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1020 830 243 76 0 chr12 57083064 57083249 -64174281 - B3 SINE B2 -17 199 1 1 1020 288 0 0 0 chr12 57085647 57085679 -64171851 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1020 261 0 0 0 chr12 57085679 57085707 -64171823 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1020 237 83 0 0 chr12 57086052 57086088 -64171442 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1020 504 264 0 0 chr12 57086117 57086223 -64171307 + ID_B1 SINE B4 117 222 -2 1 1020 29 47 0 0 chr12 57086589 57086632 -64170898 + AT_rich Low_complexity Low_complexity 1 43 0 1 1020 410 227 88 35 chr12 57086991 57087105 -64170425 + MER58B DNA MER1_type 222 341 0 1 1020 621 205 43 0 chr12 57087171 57087288 -64170242 + RSINE1 SINE B4 1 122 -43 1 1020 324 70 0 0 chr12 57087297 57087340 -64170190 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1020 761 263 353 20 chr12 57087440 57087748 -64169782 + MER77 LTR ERVL 196 605 -2 2 1020 210 289 0 19 chr12 57087764 57087817 -64169713 + polypurine Low_complexity Low_complexity 3 54 0 2 1020 228 62 0 0 chr12 57087837 57087850 -64169680 + (GA)n Simple_repeat Simple_repeat 1 13 0 2 1020 441 0 0 0 chr12 57087850 57087899 -64169631 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1020 228 62 0 0 chr12 57087899 57087917 -64169613 + (GA)n Simple_repeat Simple_repeat 2 19 0 2 1020 1574 181 104 20 chr12 57087921 57088137 -64169393 + ORR1D1 LTR MaLR 1 248 -126 2 1020 221 83 28 0 chr12 57088137 57088173 -64169357 + (CCTG)n Simple_repeat Simple_repeat 2 38 0 2 1020 1574 181 104 20 chr12 57088173 57088301 -64169229 + ORR1D1 LTR MaLR 249 374 0 2 1020 848 239 206 24 chr12 57088395 57088687 -64168843 + MTD LTR MaLR 50 394 -25 2 1020 373 265 50 10 chr12 57089243 57089342 -64168188 + B1F1 SINE Alu 2 104 -45 2 1020 184 302 0 0 chr12 57089517 57089560 -64167970 - L2c LINE L2 -316 3071 3029 2 1020 945 233 24 5 chr12 57091578 57091789 -64165741 - B3 SINE B2 0 216 2 2 1020 256 312 100 121 chr12 57091997 57092163 -64165367 + MLT1A1 LTR MaLR 34 189 -219 2 1020 1026 141 0 14 chr12 57092163 57092299 -64165231 + B1_Mus1 SINE Alu 5 140 -8 2 1020 504 0 0 0 chr12 57092299 57092355 -64165175 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 2 1020 807 39 0 0 chr12 57092362 57092465 -64165065 + (CAAAC)n Simple_repeat Simple_repeat 2 104 0 2 1020 256 312 100 121 chr12 57092465 57092676 -64164854 + MLT1A1 LTR MaLR 190 403 -5 2 1020 288 314 102 108 chr12 57093362 57093538 -64163992 - MLT1C LTR MaLR -16 451 283 2 1020 5537 49 17 0 chr12 57093538 57094172 -64163358 - L1_Mus1 LINE L1 0 6567 5923 2 1020 288 314 102 108 chr12 57094172 57094338 -64163192 - MLT1C LTR MaLR -185 282 111 2 1020 406 367 7 26 chr12 57094431 57094585 -64162945 - RSINE1 SINE B4 -4 161 11 2 1020 661 240 45 99 chr12 57095095 57095334 -64162196 + B3A SINE B2 2 215 -1 2 1020 365 252 19 66 chr12 57095868 57095974 -64161556 - Lx8 LINE L1 -372 7101 7001 2 1020 202 225 0 51 chr12 57096041 57096158 -64161372 + (TATATG)n Simple_repeat Simple_repeat 6 116 0 2 1020 817 227 16 33 chr12 57096173 57096355 -64161175 - B3A SINE B2 -16 182 4 2 1020 1892 260 69 4 chr12 57096371 57096866 -64160664 - Lx8 LINE L1 -476 6997 6471 2 1020 630 0 0 0 chr12 57097887 57097957 -64159573 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1020 270 0 0 0 chr12 57097957 57097986 -64159544 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1020 1391 80 5 46 chr12 57098796 57098993 -64158537 - B2_Mm2 SINE B2 -5 190 2 2 1020 427 304 65 0 chr12 57099739 57099907 -64157623 - MER5A DNA MER1_type 0 189 11 2 1020 531 0 0 0 chr12 57100408 57100467 -64157063 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1020 1721 123 60 112 chr12 57101139 57101486 -64156044 - ORR1A4 LTR MaLR 0 329 1 2 1020 208 204 61 0 chr12 57101658 57101707 -64155823 + L2a LINE L2 3259 3310 -77 2 1020 468 77 0 0 chr12 57101726 57101791 -64155739 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1020 436 276 8 17 chr12 57101798 57101916 -64155614 - RSINE1 SINE B4 -40 125 9 2 1020 209 302 139 0 chr12 57101920 57102006 -64155524 + L2a LINE L2 3319 3416 -10 2 1020 1064 45 0 0 chr12 57102445 57102578 -64154952 + B1_Mm SINE Alu 13 145 -2 2 1020 207 0 0 0 chr12 57102578 57102601 -64154929 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1020 252 0 0 0 chr12 57102603 57102631 -64154899 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1020 219 36 0 0 chr12 57102802 57102830 -64154700 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1020 468 0 0 0 chr12 57103571 57103623 -64153907 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1020 225 108 0 0 chr12 57103623 57103659 -64153871 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1020 339 230 23 11 chr12 57103661 57103749 -64153781 - L1M3 LINE L1 -418 5771 5683 2 1020 1032 157 0 0 chr12 57103759 57103906 -64153624 + B1_Mus2 SINE Alu 1 147 0 2 1020 185 394 10 0 chr12 57104029 57104133 -64153397 + MIRm SINE MIR 159 263 -13 2 1020 23 54 0 0 chr12 57106348 57106385 -64151145 + AT_rich Low_complexity Low_complexity 1 37 0 2 1020 976 106 34 41 chr12 57107853 57108000 -64149530 - B1_Mur4 SINE Alu -2 148 3 2 1020 429 20 0 0 chr12 57108036 57108086 -64149444 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1020 254 167 137 14 chr12 57109866 57109939 -64147591 + Lx4A LINE L1 6977 7058 0 2 1020 1148 59 7 0 chr12 57110007 57110142 -64147388 - B1_Mus1 SINE Alu -11 137 2 2 1020 214 29 0 54 chr12 57110169 57110206 -64147324 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1020 230 291 25 12 chr12 57110364 57110442 -64147088 - MLT1I LTR MaLR -7 404 326 2 1020 515 215 0 128 chr12 57110442 57110458 -64147072 - RMER10B LTR ERVL 0 398 385 2 1020 195 42 0 0 chr12 57110458 57110482 -64147048 + (C)n Simple_repeat Simple_repeat 1 24 0 2 1020 515 215 0 128 chr12 57110482 57110700 -64146830 - RMER10B LTR ERVL -14 384 194 2 1020 721 188 188 0 chr12 57110688 57110885 -64146645 - RMER10B LTR ERVL -134 264 31 2 1020 315 0 0 0 chr12 57111910 57111945 -64145585 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1020 549 360 38 30 chr12 57111957 57112223 -64145307 - B4A SINE B4 -22 270 3 2 1020 273 365 104 19 chr12 57112327 57112433 -64145097 + MTE2a LTR MaLR 23 137 -242 2 1020 730 343 39 44 chr12 57112366 57112729 -64144801 + MT2A LTR ERVL 69 429 -104 2 1020 716 106 31 47 chr12 57112849 57112978 -64144552 + MurERV4_19-int LTR ERVK 5654 5780 0 2 1020 2773 169 119 35 chr12 57112978 57113400 -64144130 + RMER19C LTR ERVK 1 468 -143 2 1020 2232 35 0 15 chr12 57113400 57113664 -64143866 - L1Md_F3 LINE L1 -1 6583 6324 2 1020 2773 169 119 35 chr12 57113664 57113805 -64143725 + RMER19C LTR ERVK 469 611 0 2 1020 326 182 37 25 chr12 57113805 57113968 -64143562 + (TA)n Simple_repeat Simple_repeat 1 165 0 2 1020 246 325 142 43 chr12 57114156 57114458 -64143072 - L1M3b LINE L1 -5949 332 1 2 1020 371 315 105 20 chr12 57115969 57116121 -64141409 - RSINE1 SINE B4 0 165 1 2 1020 459 0 0 0 chr12 57116658 57116709 -64140821 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1020 1133 292 111 18 chr12 57116859 57117553 -64139977 - L1MA4A LINE L1 -387 5916 5096 2 1020 270 0 0 0 chr12 57117583 57117613 -64139917 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2 1020 634 234 16 0 chr12 57117613 57117737 -64139793 - B1_Mur3 SINE Alu -23 126 1 2 1020 450 302 53 15 chr12 57117624 57117755 -64139775 - B4 SINE B4 -88 204 69 2 1020 1128 179 0 42 chr12 57119009 57119247 -64138283 + ORR1C2 LTR MaLR 1 216 -168 2 1020 6224 86 0 35 chr12 57119401 57120230 -64137300 - L1_Mus1 LINE L1 0 6567 5768 2 1020 384 22 0 0 chr12 57120403 57120448 -64137082 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1020 1257 189 19 14 chr12 57121106 57121321 -64136209 + B3 SINE B2 1 216 0 2 1020 312 235 37 12 chr12 57121827 57121909 -64135621 + L1MEg LINE L1 1864 1947 -4137 2 1020 186 220 0 0 chr12 57122882 57122941 -64134589 + CT-rich Low_complexity Low_complexity 2 60 0 2 1020 1615 201 211 79 chr12 57124197 57124889 -64132641 + Lx7 LINE L1 6446 7529 -167 2 1020 797 174 31 92 chr12 57124875 57124947 -64132583 + Lx7 LINE L1 7483 7549 -147 2 1020 1472 86 5 0 chr12 57124947 57125133 -64132397 + B2_Mm1t SINE B2 1 187 -6 2 1020 797 174 31 92 chr12 57125133 57125288 -64132242 + Lx7 LINE L1 7550 7696 0 2 1020 201 188 0 0 chr12 57125409 57125441 -64132089 - MIR SINE MIR -210 52 21 2 1020 512 308 120 52 chr12 57125547 57125833 -64131697 - MLT1G1 LTR MaLR -78 477 189 2 1020 446 243 113 8 chr12 57125964 57126091 -64131439 - B1_Mus2 SINE Alu -13 136 1 2 1020 804 147 0 65 chr12 57127075 57127116 -64130414 + L1Md_F2 LINE L1 6153 6184 -398 2 1020 2296 60 0 0 chr12 57127116 57127382 -64130148 - L1_Mus1 LINE L1 0 6567 6302 2 1020 967 43 0 9 chr12 57127382 57127493 -64130037 + L1_Mus1 LINE L1 6174 6284 -283 2 1020 2242 250 75 30 chr12 57127901 57128999 -64128531 + L1_Rod LINE L1 898 2044 -3803 2 1020 473 242 7 87 chr12 57128985 57129155 -64128375 + Lx9 LINE L1 6764 7050 -594 2 1020 1371 200 239 68 chr12 57129183 57129681 -64127849 + RMER4B LTR ERVK 1 583 -2 2 1020 513 288 71 14 chr12 57129748 57129889 -64127641 + RSINE1 SINE B4 11 159 -6 2 1020 459 0 0 0 chr12 57130597 57130648 -64126882 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1020 3479 43 5 2 chr12 57131226 57131621 -64125909 - MTA_Mm LTR MaLR 0 396 1 2 1020 8117 53 0 8 chr12 57132184 57133315 -64124215 - L1Md_F2 LINE L1 0 6582 5464 2 1020 30669 70 5 3 chr12 57133313 57138176 -64119354 - L1Md_F2 LINE L1 -631 5252 379 2 1020 185 211 72 72 chr12 57138676 57138773 -64118757 + MIRm SINE MIR 178 274 -2 2 1020 292 283 122 17 chr12 57138913 57139028 -64118502 + L3 LINE CR1 4188 4314 -175 2 1020 201 202 58 16 chr12 57139307 57139428 -64118102 + (TA)n Simple_repeat Simple_repeat 2 127 0 2 1020 333 309 57 8 chr12 57139982 57140106 -64117424 + MIR3 SINE MIR 30 159 -49 2 1020 403 265 99 33 chr12 57140109 57140261 -64117269 - MER5A1 DNA MER1_type -3 163 2 2 1020 396 309 62 51 chr12 57141313 57141490 -64116040 - B4A SINE B4 -112 180 2 2 1020 21 0 0 0 chr12 57141509 57141530 -64116000 + AT_rich Low_complexity Low_complexity 1 21 0 2 1020 278 314 117 39 chr12 57141831 57142010 -64115520 + L1_Rod LINE L1 52 244 -6928 2 1020 9194 194 62 28 chr12 57142065 57144785 -64112745 + L1_Rod LINE L1 437 3238 -2609 2 1020 1158 66 0 0 chr12 57144785 57144937 -64112593 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 2 1020 9194 189 52 24 chr12 57144937 57145082 -64112448 + L1_Rod LINE L1 3239 3395 -2452 2 1020 1883 131 61 20 chr12 57145082 57145425 -64112105 - RLTR11A2 LTR ERVK 0 527 171 2 1020 1033 266 68 39 chr12 57145427 57145763 -64111767 - Lx9 LINE L1 -416 7228 6883 2 1020 935 288 105 83 chr12 57146013 57146641 -64110889 - RMER13A LTR ERVK -217 643 2 2 1021 382 340 74 14 chr12 57148250 57148465 -64109065 - MIR SINE MIR -21 241 14 2 1021 8964 124 9 6 chr12 57148505 57150535 -64106995 - Lx LINE L1 -221 6433 4397 2 1021 3157 38 0 0 chr12 57150535 57150881 -64106649 + ORR1A1 LTR MaLR 1 346 0 3 1021 3113 39 29 2 chr12 57150882 57151292 -64106238 + ORR1A1-int LTR MaLR 2 422 -1370 3 1021 258 88 0 0 chr12 57151283 57151317 -64106213 + ORR1A1-int LTR MaLR 1080 1113 -679 3 1021 445 42 18 0 chr12 57151309 57151372 -64106158 + ORR1A1 LTR MaLR 264 346 0 3 1021 699 126 13 3 chr12 57152158 57152271 -64105259 + RLTR20B2 LTR ERVK 1 124 -439 3 1021 2168 229 48 16 chr12 57152307 57152866 -64104664 - Lx7 LINE L1 -1299 6397 5821 3 1021 1387 187 57 0 chr12 57152861 57153107 -64104423 - Lx7 LINE L1 -172 5708 5449 3 1021 707 62 0 10 chr12 57153118 57153216 -64104314 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 3 1021 1275 89 0 0 chr12 57153216 57153394 -64104136 + (TTC)n Simple_repeat Simple_repeat 2 180 0 3 1021 222 236 0 0 chr12 57153394 57153449 -64104081 + CT-rich Low_complexity Low_complexity 2 56 0 3 1021 505 336 100 48 chr12 57154641 57154910 -64102620 + MLT1A0 LTR MaLR 83 365 0 3 1021 339 336 125 23 chr12 57155017 57155233 -64102297 + MIR SINE MIR 6 243 -19 3 1021 232 337 59 0 chr12 57156318 57156419 -64101111 + MLT1A0 LTR MaLR 375 481 -8 3 1021 1329 93 0 0 chr12 57156751 57157175 -64100355 + (TG)n Simple_repeat Simple_repeat 1 424 0 3 1021 563 146 11 0 chr12 57157656 57157745 -64099785 - 5S rRNA rRNA -31 90 1 3 1021 438 20 0 0 chr12 57158798 57158849 -64098681 + (CGA)n Simple_repeat Simple_repeat 2 52 0 3 1021 495 0 0 0 chr12 57158849 57158904 -64098626 + (GAA)n Simple_repeat Simple_repeat 1 55 0 3 1021 285 29 0 0 chr12 57159087 57159121 -64098409 + (TGG)n Simple_repeat Simple_repeat 2 35 0 3 1021 549 0 0 0 chr12 57160367 57160428 -64097102 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1021 383 256 48 64 chr12 57160429 57160554 -64096976 - B3A SINE B2 -75 123 1 3 1021 334 250 158 57 chr12 57161280 57161520 -64096010 - L1MA4 LINE L1 -417 5883 5589 3 1021 1216 250 40 4 chr12 57161606 57161883 -64095647 - B4 SINE B4 -2 290 4 3 1021 183 235 37 56 chr12 57161952 57162006 -64095524 + L3b LINE CR1 197 249 -233 3 1021 311 256 24 12 chr12 57162095 57162178 -64095352 - MER5A1 DNA MER1_type -22 144 61 3 1021 348 24 0 0 chr12 57162406 57162447 -64095083 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1021 255 173 0 0 chr12 57162447 57162499 -64095031 + GA-rich Low_complexity Low_complexity 1 52 0 3 1021 260 275 38 0 chr12 57162596 57162676 -64094854 + ORR1E LTR MaLR 2 84 -275 3 1021 426 214 71 0 chr12 57163566 57163678 -64093852 - Lx9 LINE L1 -7 7637 7518 3 1021 1189 224 0 4 chr12 57163673 57163915 -64093615 - Lx9 LINE L1 -863 6781 6541 3 1021 294 336 26 11 chr12 57166296 57166459 -64091071 + LTR16E1 LTR ERVL 285 499 -39 3 1021 254 359 13 0 chr12 57166973 57167051 -64090479 - LTR33A LTR ERVL -348 172 94 3 1021 2204 232 73 18 chr12 57167247 57167805 -64089725 - Lx6 LINE L1 -4 7456 6868 3 1021 1882 198 38 82 chr12 57167895 57168388 -64089142 + RLTR20B3 LTR ERVK 54 521 -56 3 1021 898 200 0 44 chr12 57168427 57168631 -64088899 - Lx6 LINE L1 -1508 5952 5758 3 1021 558 0 0 0 chr12 57168864 57168926 -64088604 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1021 245 256 78 0 chr12 57168944 57169034 -64088496 - L1MB8 LINE L1 -241 5937 5841 3 1021 265 267 0 13 chr12 57169314 57169390 -64088140 + (CATATA)n Simple_repeat Simple_repeat 5 79 0 3 1021 617 247 153 29 chr12 57169441 57169683 -64087847 + RLTR10A LTR ERVK 140 411 0 3 1021 661 279 80 6 chr12 57169913 57170263 -64087267 + L1MEg LINE L1 1499 1874 -4368 3 1021 322 279 78 54 chr12 57170284 57170413 -64087117 + L1MEg LINE L1 2283 2414 -3732 3 1021 1084 259 118 24 chr12 57170446 57170742 -64086788 + MTE2a LTR MaLR 56 379 0 3 1021 442 255 0 68 chr12 57170786 57170904 -64086626 + RLTR17 LTR ERVK 103 212 -480 3 1021 754 249 60 47 chr12 57170935 57171159 -64086371 + RLTR17 LTR ERVK 286 512 -180 3 1021 846 154 7 0 chr12 57171159 57171302 -64086228 + B1_Mus2 SINE Alu 2 145 -2 3 1021 2285 159 94 24 chr12 57171385 57171876 -64085654 + RLTR11A2 LTR ERVK 1 525 -2 3 1021 712 281 52 6 chr12 57171903 57172075 -64085455 + B4 SINE B4 8 187 -105 3 1021 296 333 28 56 chr12 57171981 57172089 -64085441 + PB1D9 SINE Alu 8 112 -8 3 1021 23 33 0 0 chr12 57172302 57172332 -64085198 + AT_rich Low_complexity Low_complexity 1 30 0 3 1021 6034 190 85 11 chr12 57172695 57173676 -64083854 - Lx9 LINE L1 -1 7643 6602 3 1021 2395 148 148 97 chr12 57173676 57174333 -64083197 + RMER6C LTR ERVK 1 690 0 3 1021 6034 190 85 11 chr12 57174333 57174753 -64082777 - Lx9 LINE L1 -1043 6601 6138 3 1021 1520 202 91 30 chr12 57175330 57175842 -64081688 - Lx9 LINE L1 -1676 5968 5390 3 1021 713 339 16 24 chr12 57175977 57176228 -64081302 + B4A SINE B4 2 250 -42 3 1021 536 29 14 0 chr12 57176326 57176396 -64081134 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1021 294 292 40 27 chr12 57176549 57176623 -64080907 + LTR16A LTR ERVL 121 195 -256 3 1021 310 307 113 56 chr12 57176825 57176922 -64080608 + L1MEg LINE L1 4963 5054 -1092 3 1021 297 0 0 0 chr12 57176922 57176955 -64080575 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1021 310 307 113 56 chr12 57176955 57177247 -64080283 + L1MEg LINE L1 5055 5373 -773 3 1021 245 257 124 0 chr12 57177616 57177696 -64079834 - ID2 SINE ID -62 90 3 3 1021 243 276 53 0 chr12 57177922 57177998 -64079532 + MIRc SINE MIR 84 163 -105 3 1021 868 317 75 60 chr12 57178142 57178547 -64078983 + MLT2D LTR ERVL 4 554 0 3 1021 306 0 0 0 chr12 57178997 57179031 -64078499 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1021 532 62 25 0 chr12 57179034 57179115 -64078415 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 3 1021 492 252 81 0 chr12 57179132 57179255 -64078275 - B1_Mur1 SINE Alu -12 137 5 3 1021 1582 256 37 50 chr12 57179329 57179813 -64077717 + Lx6 LINE L1 6957 7434 -26 3 1021 576 0 0 0 chr12 57179833 57179897 -64077633 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 3 1021 582 128 0 0 chr12 57179989 57180083 -64077447 + (TG)n Simple_repeat Simple_repeat 1 94 0 3 1021 215 289 89 40 chr12 57180626 57180727 -64076803 - L2a LINE L2 -86 3340 3235 3 1021 357 354 14 7 chr12 57180694 57180842 -64076688 - L2a LINE L2 -464 2955 2807 3 1021 827 250 82 10 chr12 57180990 57181331 -64076199 + L1M5 LINE L1 5304 5684 -649 3 1021 249 154 44 44 chr12 57182178 57182246 -64075284 - L1MA6 LINE L1 -56 6244 6177 3 1021 366 42 0 0 chr12 57182353 57182401 -64075129 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1021 420 268 53 25 chr12 57183109 57183228 -64074302 - PB1 SINE Alu -9 118 1 3 1021 195 42 0 0 chr12 57184068 57184092 -64073438 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1021 657 140 0 18 chr12 57184140 57184249 -64073281 + RMER2 LTR ERV1 1 107 -460 3 1021 264 298 140 8 chr12 57184251 57184412 -64073118 + MIRc SINE MIR 23 202 -66 3 1021 611 231 42 7 chr12 57184630 57184774 -64072756 + B1_Mur4 SINE Alu 2 150 0 3 1021 631 251 175 70 chr12 57184832 57185175 -64072355 - MTEa LTR MaLR 0 379 1 3 1021 2496 302 51 17 chr12 57185178 57185984 -64071546 - MTEa-int LTR MaLR -3 1577 745 3 1021 643 182 146 7 chr12 57186133 57186277 -64071253 - MTD LTR MaLR -12 407 244 3 1021 1327 35 0 44 chr12 57187131 57187312 -64070218 - L1Md_F2 LINE L1 0 6582 6410 3 1021 277 291 126 50 chr12 57187755 57187914 -64069616 + MIR SINE MIR 84 254 -8 3 1021 2363 139 277 13 chr12 57188162 57188477 -64069053 - RMER6C LTR ERVK 0 690 323 3 1021 360 0 0 0 chr12 57188477 57188517 -64069013 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1021 2363 139 277 13 chr12 57188517 57188747 -64068783 - RMER6C LTR ERVK -368 322 1 3 1021 304 208 194 68 chr12 57189414 57189517 -64068013 + PB1D10 SINE Alu 1 116 -1 3 1021 342 221 119 94 chr12 57189915 57190075 -64067455 + RSINE1 SINE B4 2 165 0 3 1021 252 303 44 88 chr12 57191307 57191466 -64066064 + RLTR41 LTR ERV1 252 403 -43 3 1021 438 240 83 0 chr12 57192014 57192135 -64065395 - MER5A1 DNA MER1_type -2 164 34 3 1021 608 237 0 67 chr12 57192770 57192919 -64064611 + B1_Mur1 SINE Alu 2 140 -9 3 1021 218 208 42 0 chr12 57193056 57193104 -64064426 + MIRc SINE MIR 115 164 -104 3 1021 465 19 0 0 chr12 57193805 57193859 -64063671 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1021 1969 146 25 14 chr12 57195078 57195433 -64062097 + RLTR15 LTR ERVK 1 359 0 3 1021 2212 105 30 6 chr12 57195714 57196048 -64061482 + Lx LINE L1 6308 6649 -5 3 1021 182 373 0 0 chr12 57196100 57196167 -64061363 - MIRb SINE MIR -70 198 132 3 1021 409 335 56 42 chr12 57196319 57196606 -64060924 + L2c LINE L2 3096 3386 -1 3 1021 373 296 15 111 chr12 57196870 57197132 -64060398 + Charlie23a DNA MER1_type 30 266 -73 3 1021 236 325 56 40 chr12 57197953 57198078 -64059452 - MIRc SINE MIR -64 198 72 3 1021 351 221 12 61 chr12 57198386 57198468 -64059062 - PB1D10 SINE Alu -16 101 24 3 1021 552 290 39 58 chr12 57198593 57198747 -64058783 + B4A SINE B4 3 153 -139 3 1021 627 212 0 9 chr12 57198760 57198874 -64058656 + B1F2 SINE Alu 36 148 -1 3 1021 284 329 0 0 chr12 57198894 57198967 -64058563 + B4A SINE B4 215 287 -5 3 1021 554 249 171 8 chr12 57199017 57199447 -64058083 + L1M2 LINE L1 5181 5690 -607 3 1021 257 346 54 23 chr12 57200127 57200257 -64057273 + MLT1J-int LTR MaLR 1249 1382 -5 3 1021 1099 174 11 0 chr12 57200357 57200541 -64056989 - B3 SINE B2 -4 212 27 3 1021 24 0 0 0 chr12 57200541 57200565 -64056965 + AT_rich Low_complexity Low_complexity 1 24 0 3 1021 258 95 0 0 chr12 57200586 57200628 -64056902 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 3 1021 1069 35 28 0 chr12 57200628 57200772 -64056758 + (TTTC)n Simple_repeat Simple_repeat 3 150 0 3 1021 337 244 37 0 chr12 57200936 57201018 -64056512 + Lx8 LINE L1 6781 6865 -608 3 1021 183 162 0 0 chr12 57201265 57201302 -64056228 + (TAA)n Simple_repeat Simple_repeat 1 37 0 3 1021 235 324 0 0 chr12 57201312 57201386 -64056144 + L1M5 LINE L1 3796 3869 -2277 3 1021 260 239 162 81 chr12 57201460 57201506 -64056024 - MT2B2 LTR ERVL -217 367 321 3 1021 185 0 0 39 chr12 57201506 57201532 -64055998 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1021 260 239 162 81 chr12 57201532 57201658 -64055872 - MT2B2 LTR ERVL -264 320 182 3 1021 632 216 0 31 chr12 57201534 57201663 -64055867 - B1_Mur2 SINE Alu -13 136 12 3 1021 424 333 77 0 chr12 57201744 57201900 -64055630 + Lx8 LINE L1 7159 7326 -147 3 1021 605 14 14 0 chr12 57201902 57201976 -64055554 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1021 820 299 60 97 chr12 57202151 57202350 -64055180 + L1MD LINE L1 4228 4433 -1713 3 1021 2504 134 53 5 chr12 57202350 57202748 -64054782 - MTC LTR MaLR 0 421 5 3 1021 820 299 60 97 chr12 57202748 57203518 -64054012 + L1MD LINE L1 4434 5161 -985 3 1021 536 264 99 43 chr12 57203593 57203945 -64053585 + L1M5 LINE L1 5263 5634 -545 4 1021 1645 289 45 77 chr12 57203986 57204432 -64053098 - Lx8 LINE L1 -2 7471 7030 4 1021 2882 30 3 0 chr12 57204432 57204763 -64052767 + IAPEY3_LTR LTR ERVK 1 332 0 4 1021 1645 289 45 77 chr12 57204763 57205139 -64052391 - Lx8 LINE L1 -444 7029 6675 4 1021 4378 16 2 0 chr12 57205163 57205655 -64051875 - MT2_Mm LTR ERVL 0 493 1 4 1021 302 0 0 0 chr12 57205655 57205693 -64051837 - MERVL-int LTR ERVL 0 5485 5448 4 1021 390 167 46 35 chr12 57205693 57205780 -64051750 - ORR1A3-int LTR MaLR -1323 640 553 4 1021 45226 16 6 0 chr12 57205780 57211106 -64046424 - MERVL-int LTR ERVL -125 5360 1 4 1021 4378 16 2 0 chr12 57211106 57211598 -64045932 - MT2_Mm LTR ERVL 0 493 1 4 1021 648 235 6 38 chr12 57211598 57211757 -64045773 - Lx8 LINE L1 -824 6649 6496 4 1021 1058 84 28 0 chr12 57211805 57211947 -64045583 - B1_Mm SINE Alu -1 146 1 4 1021 246 244 44 0 chr12 57211950 57212040 -64045490 + L1M5 LINE L1 5657 5750 -414 4 1021 396 0 0 0 chr12 57212446 57212490 -64045040 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1021 293 47 0 23 chr12 57214884 57214928 -64042602 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1021 439 301 22 8 chr12 57218396 57218530 -64039000 + B1F1 SINE Alu 4 139 -10 4 1021 1914 161 56 58 chr12 57218569 57218617 -64038913 + ORR1C1 LTR MaLR 1 42 -336 4 1021 441 54 0 0 chr12 57218617 57218673 -64038857 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 4 1021 1260 181 20 20 chr12 57218673 57218921 -64038609 - Lx4A LINE L1 -7 7051 6804 4 1021 1914 161 56 58 chr12 57218921 57219248 -64038282 + ORR1C1 LTR MaLR 43 375 -3 4 1021 402 341 24 8 chr12 57219500 57219627 -64037903 - MER94 DNA AcHobo -4 130 2 4 1021 304 298 100 117 chr12 57220866 57221235 -64036295 - ORR1E LTR MaLR 0 367 5 4 1021 6526 56 1 21 chr12 57222365 57223204 -64034326 - RLTR13B2 LTR ERVK 0 822 1 4 1021 273 368 55 16 chr12 57224038 57224165 -64033365 + MLT1F2 LTR MaLR 410 541 -19 4 1021 335 288 114 29 chr12 57224491 57224666 -64032864 - L1M5 LINE L1 -402 5760 5571 4 1021 7936 144 78 39 chr12 57224877 57226686 -64030844 + L1_Mur2 LINE L1 1598 3477 -2400 4 1021 625 175 68 34 chr12 57226685 57226862 -64030668 + Lx5 LINE L1 6868 7050 0 4 1021 222 37 0 0 chr12 57227036 57227063 -64030467 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1021 846 206 58 6 chr12 57227219 57227390 -64030140 - ORR1D1 LTR MaLR 0 374 195 4 1021 430 92 15 0 chr12 57227453 57227518 -64030012 + Lx3B LINE L1 3461 3526 -2351 4 1021 1390 109 5 14 chr12 57227537 57227760 -64029770 - Lx2 LINE L1 0 6997 6777 4 1021 6822 121 11 4 chr12 57227761 57229267 -64028263 - Lx2 LINE L1 -353 6644 5130 4 1021 7321 171 45 32 chr12 57229255 57232735 -64024795 + Lx3B LINE L1 3505 6970 -3 4 1021 7014 183 33 7 chr12 57232756 57235068 -64022462 + Lx5 LINE L1 4664 7039 -11 4 1021 186 133 0 0 chr12 57235071 57235101 -64022429 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4 1021 1252 136 5 9 chr12 57235109 57235324 -64022206 + L1_Mur3 LINE L1 2156 2369 -3511 4 1021 513 271 41 33 chr12 57235386 57235749 -64021781 - L1_Mur3 LINE L1 -2518 3362 2997 4 1021 659 209 17 0 chr12 57235770 57235885 -64021645 + B1_Mur4 SINE Alu 2 118 -32 4 1021 297 0 0 0 chr12 57235889 57235922 -64021608 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1021 556 291 101 54 chr12 57235931 57236486 -64021044 - L1_Mur3 LINE L1 -2905 2975 2395 4 1021 4780 165 47 29 chr12 57236497 57237383 -64020147 + RMER19B LTR ERVK 1 902 0 4 1021 21 0 0 0 chr12 57237442 57237463 -64020067 + GC_rich Low_complexity Low_complexity 1 21 0 4 1021 970 329 33 0 chr12 57238415 57238874 -64018656 - RMER16-int LTR ERVK -419 4987 4514 4 1021 4659 137 64 46 chr12 57238874 57239818 -64017712 + RMER17B LTR ERVK 1 953 -5 4 1021 276 267 86 37 chr12 57239824 57240011 -64017519 - RMER16-int LTR ERVK -888 4518 4323 4 1021 290 53 0 0 chr12 57240040 57240078 -64017452 - L1_Mus2 LINE L1 -114 6452 6415 4 1021 1059 289 37 34 chr12 57240096 57240720 -64016810 - RMER16-int LTR ERVK -1942 3464 2839 4 1021 1295 297 42 56 chr12 57240740 57240797 -64016733 - RMER16-int LTR ERVK -2661 2745 2693 4 1021 402 21 0 0 chr12 57240797 57240844 -64016686 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 4 1021 1156 63 0 7 chr12 57240844 57240988 -64016542 - B1_Mm SINE Alu -3 144 2 4 1021 1295 297 42 56 chr12 57240988 57241230 -64016300 - RMER16-int LTR ERVK -2714 2692 2454 4 1021 2735 102 27 5 chr12 57241230 57241643 -64015887 - BGLII_Mus LTR ERVK 0 422 1 4 1021 1295 297 42 56 chr12 57241643 57242349 -64015181 - RMER16-int LTR ERVK -2953 2453 1754 4 1021 276 317 73 33 chr12 57242355 57242505 -64015025 - SRV_MM-int LTR ERVK -3304 2863 2708 4 1021 342 263 0 0 chr12 57243200 57243276 -64014254 - SRV_MM-int LTR ERVK -4194 1973 1898 4 1021 393 225 75 0 chr12 57243325 57243445 -64014085 - SRV_MM-int LTR ERVK -4341 1826 1698 4 1021 526 331 40 47 chr12 57243628 57244252 -64013278 - SRV_MM-int LTR ERVK -4616 1551 932 4 1021 23 0 0 0 chr12 57244335 57244358 -64013172 + AT_rich Low_complexity Low_complexity 1 23 0 4 1021 17710 114 36 29 chr12 57245687 57246502 -64011028 + MurERV4_19-int LTR ERVK 2408 3223 -2557 4 1021 324 0 0 0 chr12 57246502 57246538 -64010992 + (CAA)n Simple_repeat Simple_repeat 1 36 0 4 1021 17710 114 36 29 chr12 57246538 57248139 -64009391 + MurERV4_19-int LTR ERVK 3224 4879 -901 4 1021 342 0 0 0 chr12 57248139 57248177 -64009353 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1021 17710 114 36 29 chr12 57248177 57248854 -64008676 + MurERV4_19-int LTR ERVK 4880 5523 -257 4 1021 16623 76 2 5 chr12 57248862 57252011 -64005519 - L1Md_Gf LINE L1 -2288 3598 361 4 1021 791 116 136 39 chr12 57252014 57252220 -64005310 + MurERV4_19-int LTR ERVK 5555 5780 0 4 1021 1383 204 91 6 chr12 57252220 57252438 -64005092 + RMER19B LTR ERVK 1 232 -670 4 1021 270 0 0 0 chr12 57252438 57252468 -64005062 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1021 2365 132 40 8 chr12 57252468 57252879 -64004651 + RMER19B LTR ERVK 233 902 0 4 1021 272 319 69 76 chr12 57252879 57253167 -64004363 - L1_Mur3 LINE L1 -3513 2367 2082 4 1021 283 275 61 24 chr12 57253201 57253283 -64004247 + RSINE1 SINE B4 79 163 -2 4 1021 469 297 0 0 chr12 57253320 57253431 -64004099 + PB1D9 SINE Alu 2 112 -8 4 1021 3612 168 9 30 chr12 57253799 57254609 -64002921 + L1Md_F2 LINE L1 446 1221 -5503 4 1021 28350 67 18 1 chr12 57254609 57258593 -63998937 + L1Md_F2 LINE L1 1532 5585 -298 4 1021 7717 59 22 1 chr12 57258594 57259568 -63997962 + L1Md_F2 LINE L1 5587 6580 -2 4 1021 354 45 0 0 chr12 57260494 57260538 -63996992 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 4 1021 22 0 0 0 chr12 57262314 57262336 -63995194 + AT_rich Low_complexity Low_complexity 1 22 0 4 1021 283 300 0 0 chr12 57262572 57262632 -63994898 - ID4_ SINE ID -8 75 16 4 1021 266 297 0 15 chr12 57262574 57262639 -63994891 - tRNA-Ala-GCY_ tRNA tRNA -8 67 4 4 1021 1013 244 175 6 chr12 57262662 57262976 -63994554 + ORR1D1 LTR MaLR 1 367 -7 4 1021 21 0 0 0 chr12 57263021 57263042 -63994488 + AT_rich Low_complexity Low_complexity 1 21 0 4 1021 442 274 119 89 chr12 57263118 57263358 -63994172 - MTD LTR MaLR -124 295 8 4 1021 1366 246 26 15 chr12 57263409 57263766 -63993764 - ORR1D2 LTR MaLR -10 364 1 4 1021 1031 287 48 24 chr12 57264073 57264491 -63993039 - L1MA4 LINE L1 -368 5932 5505 4 1021 4981 93 4 1 chr12 57264495 57265184 -63992346 - L1_Mus3 LINE L1 -2 6636 5946 4 1021 6823 89 8 19 chr12 57265184 57266756 -63990774 + L1_Mus2 LINE L1 5013 6566 0 4 1021 240 119 0 0 chr12 57266768 57266810 -63990720 + MusHAL1 LINE L1 524 565 -2789 4 1021 795 87 17 0 chr12 57266810 57266925 -63990605 - L1_Mus4 LINE L1 -329 6307 6191 4 1021 3067 137 10 32 chr12 57266923 57267517 -63990013 + L1_Mur1 LINE L1 2500 3080 -2806 4 1021 3066 196 69 9 chr12 57267499 57268182 -63989348 + Lx2B LINE L1 6275 6998 -2 4 1021 1131 82 0 0 chr12 57268398 57268544 -63988986 - B1_Mm SINE Alu 0 147 2 4 1021 806 259 55 0 chr12 57268555 57268756 -63988774 - B3 SINE B2 -4 212 1 4 1021 290 333 50 43 chr12 57268858 57268874 -63988656 + ID_B1 SINE B4 71 212 -12 4 1021 384 289 80 32 chr12 57268874 57268999 -63988531 + B1F1 SINE Alu 7 137 -12 4 1021 22 0 0 0 chr12 57269079 57269101 -63988429 + AT_rich Low_complexity Low_complexity 1 22 0 4 1021 8466 208 81 48 chr12 57269480 57272369 -63985161 + Lx9 LINE L1 3068 6099 -1545 4 1021 552 100 0 0 chr12 57272369 57272449 -63985081 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 1021 4992 206 152 58 chr12 57272449 57273374 -63984156 + Lx9 LINE L1 6100 7153 -491 4 1021 1185 81 0 0 chr12 57273374 57273522 -63984008 + B1_Mus1 SINE Alu 1 148 0 4 1021 4992 206 152 58 chr12 57273522 57273712 -63983818 + Lx9 LINE L1 7154 7313 -331 4 1021 4215 89 20 22 chr12 57273712 57274300 -63983230 + LTRIS_Mus LTR ERV1 1 587 0 4 1021 4992 206 152 58 chr12 57274300 57274612 -63982918 + Lx9 LINE L1 7314 7642 -2 4 1021 497 100 14 0 chr12 57274707 57274777 -63982753 + RLTR24 LTR ERV1 3 73 -456 4 1021 338 207 200 35 chr12 57274765 57274818 -63982712 + RLTR24 LTR ERV1 385 452 -77 4 1021 204 40 0 0 chr12 57274818 57274843 -63982687 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1021 338 207 200 35 chr12 57274843 57274904 -63982626 + RLTR24 LTR ERV1 453 518 -11 4 1021 1168 56 7 0 chr12 57274915 57275059 -63982471 - B1_Mm SINE Alu 0 147 3 4 1021 871 217 0 6 chr12 57275059 57275221 -63982309 - RLTR12B LTR ERVK 0 528 368 4 1021 1325 112 61 0 chr12 57275217 57275431 -63982099 - RLTR12B LTR ERVK -301 227 1 4 1021 243 268 129 61 chr12 57275819 57275966 -63981564 + RLTR15 LTR ERVK 45 201 -158 4 1021 263 336 9 26 chr12 57275970 57276086 -63981444 + RLTR15 LTR ERVK 178 291 -68 4 1021 3701 54 64 8 chr12 57276611 57277130 -63980400 - L1Md_F2 LINE L1 -23 6559 6012 4 1021 270 0 0 0 chr12 57277199 57277229 -63980301 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1021 933 221 16 0 chr12 57277286 57277476 -63980054 + RLTR14 LTR ERV1 47 239 -143 4 1021 515 16 16 0 chr12 57277481 57277545 -63979985 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 4 1021 486 0 0 0 chr12 57277581 57277635 -63979895 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 127 8165 141 39 8 chr12 57277635 57279283 -63978247 - Lx4B LINE L1 -121 6937 5223 4 1022 2181 133 35 3 chr12 57279283 57279600 -63977930 + ORR1A2 LTR MaLR 1 327 0 4 1022 6256 136 42 12 chr12 57279600 57280013 -63977517 - Lx4B LINE L1 -655 5222 4812 4 1022 864 143 23 80 chr12 57279994 57280082 -63977448 + L1_Mur2 LINE L1 3386 3465 -2412 4 1022 1246 112 0 65 chr12 57280082 57280282 -63977248 + B2_Mm2 SINE B2 1 187 -8 4 1022 864 143 23 80 chr12 57280282 57280368 -63977162 + L1_Mur2 LINE L1 3466 3550 -2327 4 1022 314 260 41 0 chr12 57280368 57280441 -63977089 + RLTR14 LTR ERV1 243 318 -64 4 1022 571 211 41 27 chr12 57280660 57280806 -63976724 + RLTR42-int LTR ERVK 1870 2017 -3505 4 1022 687 196 101 67 chr12 57280954 57281162 -63976368 + RLTR19-int LTR ERVK 4166 4380 -1757 4 1022 786 159 123 26 chr12 57281391 57281546 -63975984 + RLTR24 LTR ERV1 1 170 -359 4 1022 15114 19 0 0 chr12 57281546 57283261 -63974269 + L1Md_T LINE L1 3872 5586 -297 4 1022 9493 6 3 0 chr12 57283261 57284253 -63973277 + L1Md_T LINE L1 5587 6581 -1 4 1022 1279 211 85 7 chr12 57284443 57284715 -63972815 + RLTR24 LTR ERV1 237 529 0 4 1022 336 48 0 0 chr12 57285258 57285300 -63972230 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 4 1022 341 385 14 14 chr12 57285383 57285528 -63972002 - HAL1-2a_MD LINE L1 -524 2500 2356 4 1022 241 339 0 22 chr12 57285611 57285792 -63971738 + (TAA)n Simple_repeat Simple_repeat 1 177 0 4 1022 252 231 21 42 chr12 57285803 57285855 -63971675 + polypurine Low_complexity Low_complexity 4 56 0 4 1022 342 273 0 38 chr12 57285855 57285935 -63971595 + ID4_ SINE ID 2 78 -5 4 1022 252 231 21 42 chr12 57285935 57285977 -63971553 + polypurine Low_complexity Low_complexity 57 95 0 4 1022 5891 64 33 12 chr12 57287808 57288539 -63968991 + L1_Mus3 LINE L1 5886 6631 -7 4 1022 696 56 0 0 chr12 57288548 57288637 -63968893 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 4 1022 1139 97 14 0 chr12 57289154 57289299 -63968231 + B1_Mm SINE Alu 1 147 0 4 1022 1985 70 12 4 chr12 57290087 57290344 -63967186 + L1Md_F2 LINE L1 6324 6582 0 5 1022 189 0 0 0 chr12 57290393 57290414 -63967116 + (GGA)n Simple_repeat Simple_repeat 2 22 0 5 1022 246 65 0 0 chr12 57292325 57292356 -63965174 + ORR1B2 LTR MaLR 1 31 -343 5 1022 4507 117 39 0 chr12 57292356 57292865 -63964665 + Lx LINE L1 6006 6518 -136 5 1022 192 40 0 0 chr12 57292865 57292890 -63964640 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 5 1022 4507 117 39 0 chr12 57292890 57293004 -63964526 + Lx LINE L1 6519 6652 -2 5 1022 234 186 0 44 chr12 57293004 57293017 -63964513 + ORR1B2 LTR MaLR 32 43 -324 5 1022 25 0 0 0 chr12 57293188 57293213 -63964317 + AT_rich Low_complexity Low_complexity 1 25 0 5 1022 2093 141 28 34 chr12 57293647 57294000 -63963530 + ORR1B2 LTR MaLR 17 367 0 5 1022 180 111 0 0 chr12 57294093 57294120 -63963410 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1022 2450 217 11 149 chr12 57294160 57294869 -63962661 + RMER19C LTR ERVK 1 611 0 5 1022 181 167 18 18 chr12 57296752 57296807 -63960723 + GA-rich Low_complexity Low_complexity 4 58 0 5 1022 257 151 19 0 chr12 57297250 57297303 -63960227 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1022 5329 42 0 0 chr12 57297425 57298025 -63959505 + L1Md_T LINE L1 5983 6582 0 5 1022 540 274 32 19 chr12 57299433 57299589 -63957941 - MamRep1161 DNA TcMar -794 163 6 5 1022 468 0 0 0 chr12 57301812 57301864 -63955666 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1022 213 200 25 0 chr12 57302035 57302075 -63955455 - B4A SINE B4 -246 46 6 5 1022 437 290 111 68 chr12 57302418 57302814 -63954716 - L1MEf LINE L1 -4855 1345 928 5 1022 405 128 80 23 chr12 57302814 57302902 -63954628 - Lx3_Mus LINE L1 0 7009 6917 5 1022 437 290 111 68 chr12 57302902 57303001 -63954529 - L1MEf LINE L1 -5273 927 829 5 1022 695 62 0 10 chr12 57303012 57303110 -63954420 + (TTC)n Simple_repeat Simple_repeat 2 98 0 5 1022 255 83 45 45 chr12 57303122 57303210 -63954320 + T-rich Low_complexity Low_complexity 1 88 0 5 1022 1253 68 0 0 chr12 57303211 57303359 -63954171 - B1_Mus1 SINE Alu 0 148 1 5 1022 391 222 8 8 chr12 57304739 57304857 -63952673 + CT-rich Low_complexity Low_complexity 2 119 0 5 1022 1094 296 11 7 chr12 57304896 57304913 -63952617 - B4 SINE B4 -4 288 273 5 1022 330 79 48 0 chr12 57304913 57304976 -63952554 + (TATG)n Simple_repeat Simple_repeat 4 69 0 5 1022 1094 296 11 7 chr12 57304976 57305240 -63952290 - B4 SINE B4 -20 272 7 5 1022 312 164 0 0 chr12 57305788 57305855 -63951675 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1022 550 341 117 28 chr12 57306278 57306637 -63950893 - LTR85c LTR Gypsy? -392 431 41 5 1022 4306 62 2 0 chr12 57306686 57307189 -63950341 - L1_Mus1 LINE L1 -1 6566 6063 5 1022 459 135 0 0 chr12 57307297 57307393 -63950137 + (GA)n Simple_repeat Simple_repeat 1 96 0 5 1022 31755 88 14 25 chr12 57307581 57312682 -63944848 + L1Md_F2 LINE L1 537 5586 -297 5 1022 7964 79 7 2 chr12 57312683 57313673 -63943857 + L1Md_F2 LINE L1 5588 6582 0 5 1022 703 241 57 10 chr12 57314253 57314446 -63943084 - Lx4B LINE L1 -4 7054 6853 5 1022 21105 114 123 7 chr12 57314467 57318201 -63939329 + L1_Mus3 LINE L1 1800 6007 -631 5 1022 735 94 16 8 chr12 57318192 57318320 -63939210 + L1_Mus3 LINE L1 6510 6638 0 5 1022 4547 89 5 2 chr12 57318359 57318979 -63938551 + L1_Mus3 LINE L1 6010 6631 -7 5 1022 3196 314 63 27 chr12 57319029 57320156 -63937374 + MTE-int LTR MaLR 1 1168 -412 5 1022 3049 165 70 24 chr12 57320178 57321082 -63936448 + Lx LINE L1 6017 6825 -151 5 1022 225 0 0 0 chr12 57321082 57321107 -63936423 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 5 1022 4622 227 73 11 chr12 57321122 57322222 -63935308 + Lx9 LINE L1 6312 7479 -165 5 1022 3165 195 31 67 chr12 57322958 57324207 -63933323 + RMER1B Other Other 1 892 -174 5 1022 360 312 0 0 chr12 57324262 57324342 -63933188 + RMER15-int LTR ERVL 1994 2073 -2926 5 1022 1292 301 104 34 chr12 57324361 57324987 -63932543 - Lx8 LINE L1 -2 7471 6802 5 1022 1036 258 263 20 chr12 57324993 57325376 -63932154 + RMER15-int LTR ERVL 2088 2563 -2436 5 1022 1822 305 34 39 chr12 57325408 57326122 -63931408 + RMER15-int LTR ERVL 4147 4856 -143 5 1022 1564 185 62 97 chr12 57326135 57326525 -63931005 + ORR1C2 LTR MaLR 1 376 -8 5 1022 256 289 48 12 chr12 57326568 57326652 -63930878 + Lx9 LINE L1 7069 7155 -489 5 1022 305 272 91 58 chr12 57326924 57327045 -63930485 + RMER15 LTR ERVL 411 535 -40 5 1022 778 300 61 33 chr12 57327156 57327401 -63930129 - B4 SINE B4 -36 256 5 5 1022 2727 132 12 1 chr12 57328833 57329349 -63928181 - Lx4B LINE L1 -1110 5948 5426 5 1022 5004 161 126 15 chr12 57329347 57330327 -63927203 + Lx4B LINE L1 5952 7039 -19 5 1022 393 22 0 0 chr12 57330328 57330374 -63927156 + (CATA)n Simple_repeat Simple_repeat 2 47 0 5 1022 887 276 145 4 chr12 57332135 57332390 -63925140 - B4A SINE B4 0 292 2 5 1022 870 10 0 0 chr12 57332766 57332865 -63924665 + (TC)n Simple_repeat Simple_repeat 2 100 0 5 1022 423 0 0 0 chr12 57332865 57332911 -63924619 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1022 23 54 0 0 chr12 57333017 57333054 -63924476 + AT_rich Low_complexity Low_complexity 1 37 0 5 1022 320 261 191 88 chr12 57333088 57333235 -63924295 - B2_Mm2 SINE B2 -33 162 1 5 1022 4534 156 38 149 chr12 57333380 57333962 -63923568 + RLTR25B LTR ERVK 3 609 -419 5 1022 513 0 0 0 chr12 57333962 57334019 -63923511 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 5 1022 4534 156 38 149 chr12 57334019 57334590 -63922940 + RLTR25B LTR ERVK 610 1027 -1 5 1022 279 0 0 0 chr12 57334711 57334742 -63922788 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 5 1022 225 159 48 0 chr12 57334919 57334982 -63922548 + GA-rich Low_complexity Low_complexity 1 66 0 5 1022 422 18 18 0 chr12 57335093 57335148 -63922382 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1022 606 300 72 84 chr12 57335191 57335442 -63922088 - B4A SINE B4 -21 271 24 5 1022 252 0 0 0 chr12 57336264 57336292 -63921238 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1022 911 279 189 27 chr12 57337383 57338203 -63919327 + L1MB1 LINE L1 3713 4707 -1436 5 1022 245 138 50 33 chr12 57338213 57338273 -63919257 + L1MB1 LINE L1 5232 5292 -848 5 1022 1343 27 0 0 chr12 57338325 57338472 -63919058 + B1_Mm SINE Alu 1 147 0 5 1022 243 0 0 0 chr12 57338472 57338499 -63919031 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1022 297 0 0 0 chr12 57338644 57338677 -63918853 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1022 1487 281 71 76 chr12 57338698 57338857 -63918673 + L1MB1 LINE L1 5436 5598 -570 5 1022 1942 80 65 0 chr12 57338857 57339119 -63918411 + Lx3_Mus LINE L1 6723 7001 -8 5 1022 1487 281 71 76 chr12 57339119 57339326 -63918204 + L1MB1 LINE L1 5599 5780 -388 5 1022 1313 96 17 0 chr12 57339326 57339504 -63918026 + B2_Mm2 SINE B2 2 182 -13 5 1022 1487 281 71 76 chr12 57339504 57339871 -63917659 + L1MB1 LINE L1 5781 6166 -2 5 1022 276 30 0 0 chr12 57339890 57339923 -63917607 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1022 226 163 93 0 chr12 57340201 57340244 -63917286 - MIR SINE MIR -106 156 110 5 1022 283 336 36 55 chr12 57341736 57341956 -63915574 - L1MC4 LINE L1 0 8042 7827 5 1022 468 0 0 0 chr12 57343453 57343505 -63914025 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1022 270 0 0 0 chr12 57344273 57344303 -63913227 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1022 24 32 0 0 chr12 57344303 57344334 -63913196 + AT_rich Low_complexity Low_complexity 1 31 0 5 1022 6977 87 3 1 chr12 57344467 57345399 -63912131 - L1_Mus1 LINE L1 -1 6566 5663 5 1022 191 308 15 30 chr12 57345484 57345551 -63911979 - L2c LINE L2 -30 3357 3292 5 1022 1138 281 118 13 chr12 57346070 57346520 -63911010 + L1MA4A LINE L1 5455 5951 -352 5 1022 298 292 0 40 chr12 57347034 57347109 -63910421 + B4A SINE B4 63 134 -158 5 1022 505 335 65 30 chr12 57347102 57347302 -63910228 + B4 SINE B4 86 292 0 5 1022 243 61 0 0 chr12 57347318 57347351 -63910179 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1022 383 328 83 63 chr12 57347427 57347778 -63909752 - ORR1E LTR MaLR 0 359 2 5 1022 268 281 50 40 chr12 57348453 57348553 -63908977 + Tigger5 DNA MER2_type 15 115 -2291 5 1022 2055 157 57 11 chr12 57348579 57348946 -63908584 - ORR1C2 LTR MaLR 0 384 1 5 1022 342 337 11 0 chr12 57349004 57349099 -63908431 + Tigger5 DNA MER2_type 2311 2406 0 5 1022 208 178 13 64 chr12 57349947 57350025 -63907505 + (TTTA)n Simple_repeat Simple_repeat 1 74 0 5 1022 1344 114 5 5 chr12 57350173 57350358 -63907172 - B2_Mm2 SINE B2 -8 187 3 5 1022 256 290 129 41 chr12 57351716 57351935 -63905595 + MIRb SINE MIR 8 268 0 5 1022 29 28 0 0 chr12 57351938 57351974 -63905556 + AT_rich Low_complexity Low_complexity 1 36 0 5 1022 618 279 7 0 chr12 57352031 57352167 -63905363 - ID_B1 SINE B4 -5 219 83 5 1022 1119 256 64 15 chr12 57352595 57352919 -63904611 - RMER1B Other Other -651 415 44 5 1022 22 0 0 0 chr12 57353500 57353522 -63904008 + AT_rich Low_complexity Low_complexity 1 22 0 5 1022 390 115 0 0 chr12 57355878 57355939 -63901591 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1022 353 324 107 8 chr12 57357600 57357843 -63899687 + L1M5 LINE L1 5039 5305 -841 5 1022 842 306 68 35 chr12 57357932 57358301 -63899229 + L1MC LINE L1 5440 5820 -2062 5 1022 380 286 81 13 chr12 57360446 57360595 -63896935 - RSINE1 SINE B4 -5 160 2 5 1022 1138 121 11 17 chr12 57360965 57361141 -63896389 + B2_Mm2 SINE B2 1 175 -20 5 1022 679 144 274 0 chr12 57361333 57361479 -63896051 + URR1A DNA MER1_type 1 186 -40 5 1022 255 324 82 63 chr12 57361640 57361782 -63895748 + RSINE1 SINE B4 3 147 -18 5 1022 281 26 26 0 chr12 57361782 57361820 -63895710 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1022 255 324 82 63 chr12 57361820 57361835 -63895695 + RSINE1 SINE B4 148 162 -3 5 1022 435 317 52 26 chr12 57363454 57363645 -63893885 + MIR SINE MIR 66 261 -1 5 1022 593 102 0 9 chr12 57363780 57363889 -63893641 + (GTTTG)n Simple_repeat Simple_repeat 1 108 0 5 1022 1828 215 124 23 chr12 57364171 57364468 -63893062 - RLTR11A LTR ERVK -3 525 223 5 1022 1025 121 6 0 chr12 57364468 57364633 -63892897 + (TTC)n Simple_repeat Simple_repeat 1 166 0 5 1022 1828 215 124 23 chr12 57364633 57364812 -63892718 - RLTR11A LTR ERVK -306 222 3 5 1022 259 306 102 75 chr12 57365361 57365518 -63892012 + MLT1D LTR MaLR 44 201 -304 5 1022 360 0 0 0 chr12 57365518 57365558 -63891972 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1022 259 306 102 75 chr12 57365558 57365587 -63891943 + MLT1D LTR MaLR 202 235 -270 5 1022 396 0 0 0 chr12 57365830 57365874 -63891656 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1022 829 322 17 9 chr12 57367955 57368187 -63889343 - 7SK RNA RNA -90 241 8 5 1022 437 257 35 26 chr12 57368332 57368448 -63889082 - MER5A DNA MER1_type 0 189 73 5 1022 225 267 208 0 chr12 57368497 57368598 -63888932 - MIRb SINE MIR -112 156 35 5 1022 915 188 7 0 chr12 57369324 57369468 -63888062 - B1_Mur4 SINE Alu -5 145 1 6 1022 323 332 52 35 chr12 57370458 57370745 -63886785 + L1MA9 LINE L1 5945 6236 -76 6 1022 329 279 37 25 chr12 57370890 57370971 -63886559 + PB1D7 SINE Alu 24 105 -15 6 1022 893 171 14 7 chr12 57370968 57371109 -63886421 + B1_Mur3 SINE Alu 8 149 0 6 1022 209 191 44 0 chr12 57371113 57371181 -63886349 + A-rich Low_complexity Low_complexity 2 72 0 6 1022 620 239 192 35 chr12 57371369 57371707 -63885823 + L1ME2z LINE L1 6041 6431 -13 6 1022 240 259 0 17 chr12 57372048 57372107 -63885423 - L2c LINE L2 -250 3137 3080 6 1022 243 245 206 39 chr12 57372107 57372209 -63885321 + PB1D7 SINE Alu 1 119 -1 6 1022 2698 161 63 33 chr12 57372257 57372357 -63885173 - RLTR20B2 LTR ERVK -4 556 463 6 1022 387 0 0 0 chr12 57372357 57372400 -63885130 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1022 2698 161 63 33 chr12 57372400 57372839 -63884691 - RLTR20B2 LTR ERVK -98 462 2 6 1022 303 140 0 0 chr12 57373165 57373215 -63884315 + (CAT)n Simple_repeat Simple_repeat 3 52 0 6 1022 368 378 88 23 chr12 57373220 57373526 -63884004 + LTR16C LTR ERVL 3 328 -161 6 1022 1120 91 11 0 chr12 57373905 57374081 -63883449 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 6 1022 457 144 21 0 chr12 57374082 57374138 -63883392 + polypyrimidine Low_complexity Low_complexity 45 101 0 6 1022 1153 94 0 22 chr12 57374138 57374322 -63883208 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1022 457 144 21 0 chr12 57374322 57374362 -63883168 + polypyrimidine Low_complexity Low_complexity 4 44 0 6 1022 1546 263 81 32 chr12 57374726 57374995 -63882535 + Lx8 LINE L1 6515 6771 -702 6 1022 1110 124 42 21 chr12 57374995 57375184 -63882346 - B2_Mm2 SINE B2 -1 194 2 6 1022 1546 263 81 32 chr12 57375184 57375406 -63882124 + Lx8 LINE L1 6772 7029 -444 6 1022 538 288 110 38 chr12 57375403 57375538 -63881992 + L1MA4 LINE L1 5678 5809 -491 6 1022 333 0 0 0 chr12 57375538 57375575 -63881955 + (TAA)n Simple_repeat Simple_repeat 3 39 0 6 1022 538 288 110 38 chr12 57375575 57375785 -63881745 + L1MA4 LINE L1 5810 6047 -253 6 1022 905 270 78 11 chr12 57375811 57376081 -63881449 + B4A SINE B4 1 288 -4 6 1022 599 26 13 0 chr12 57376191 57376268 -63881262 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 1022 224 351 40 0 chr12 57378757 57378831 -63878699 + ID4_ SINE ID 4 80 -3 6 1022 237 33 0 0 chr12 57379178 57379208 -63878322 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1022 471 18 0 0 chr12 57379236 57379292 -63878238 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1022 441 0 0 0 chr12 57379292 57379340 -63878190 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1022 259 88 0 0 chr12 57379493 57379527 -63878003 - PB1D9 SINE Alu -68 52 19 6 1022 5126 173 67 7 chr12 57379540 57380510 -63877020 - RLTR25B LTR ERVK 0 1028 1 6 1022 675 167 51 45 chr12 57381380 57381537 -63875993 - RLTR28B LTR ERVL -1 523 366 6 1022 678 154 66 53 chr12 57381526 57381677 -63875853 - RLTR28B LTR ERVL -328 153 1 6 1022 228 214 0 0 chr12 57382223 57382265 -63875265 + tRNA-Ala-GCA tRNA tRNA 12 53 -22 6 1022 182 286 54 0 chr12 57382388 57382444 -63875086 - L2 LINE L2 -1417 2002 1944 6 1022 715 281 242 38 chr12 57382444 57383097 -63874433 + L1M4 LINE L1 7 778 -5764 6 1022 264 77 0 0 chr12 57383097 57383136 -63874394 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1022 715 297 130 43 chr12 57383136 57383283 -63874247 + L1M4 LINE L1 779 953 -5589 6 1022 498 258 107 49 chr12 57383286 57383510 -63874020 + LTR55 LTR ERV 2 238 -310 6 1022 689 205 30 90 chr12 57383519 57383685 -63873845 - B3 SINE B2 -56 160 5 6 1022 2273 68 76 56 chr12 57384112 57384454 -63873076 + L1Md_F2 LINE L1 6234 6582 0 6 1022 1896 207 94 3 chr12 57384549 57384931 -63872599 - MTC LTR MaLR -2 419 3 6 1022 189 94 0 0 chr12 57384994 57385026 -63872504 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 6 1022 255 274 103 9 chr12 57385366 57385473 -63872057 + MLT1F1 LTR MaLR 350 466 -103 6 1022 734 309 98 10 chr12 57385805 57386211 -63871319 + L1ME2z LINE L1 5507 5948 -496 6 1022 393 276 112 12 chr12 57386233 57386475 -63871055 + L1ME2z LINE L1 6031 6296 -148 6 1022 1182 133 51 5 chr12 57386539 57386736 -63870794 + URR1B DNA MER1_type 20 225 0 6 1022 237 233 67 0 chr12 57386737 57386797 -63870733 + L1ME2z LINE L1 6353 6416 -28 6 1022 450 0 0 0 chr12 57387395 57387445 -63870085 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1022 389 271 67 17 chr12 57387571 57387691 -63869839 + LTR86A2 LTR ERVL 81 206 -302 6 1022 371 108 31 0 chr12 57387815 57387880 -63869650 + (CGTG)n Simple_repeat Simple_repeat 4 70 0 6 1022 543 101 0 0 chr12 57388116 57388195 -63869335 + (GGA)n Simple_repeat Simple_repeat 3 81 0 6 1022 192 77 0 0 chr12 57388621 57388647 -63868883 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1022 210 105 0 0 chr12 57388885 57388923 -63868607 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1022 1301 34 7 0 chr12 57388927 57389073 -63868457 - B1_Mus2 SINE Alu 0 147 1 6 1022 227 164 35 35 chr12 57391547 57391604 -63865926 - B3 SINE B2 -2 214 158 6 1022 186 40 0 0 chr12 57391642 57391651 -63865879 + (TA)n Simple_repeat Simple_repeat 2 10 0 6 1022 345 47 0 0 chr12 57391651 57391694 -63865836 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1022 186 40 0 0 chr12 57391694 57391709 -63865821 + (TA)n Simple_repeat Simple_repeat 1 15 0 6 1022 337 325 160 14 chr12 57391777 57392064 -63865466 + L1ME4a LINE L1 5713 6041 -83 6 1022 1693 155 200 8 chr12 57395540 57395910 -63861620 - RMER4A LTR ERVK 0 466 26 6 1022 24 0 0 0 chr12 57395999 57396023 -63861507 + AT_rich Low_complexity Low_complexity 1 24 0 6 1022 192 304 63 94 chr12 57396271 57396398 -63861132 - MIRc SINE MIR -78 190 68 6 1022 231 300 14 28 chr12 57396728 57396800 -63860730 - ID2 SINE ID -12 71 1 6 1022 427 248 70 17 chr12 57396817 57396932 -63860598 - B1F SINE Alu -8 141 21 6 1022 394 326 15 15 chr12 57396932 57396951 -63860579 - ID_B1 SINE B4 -8 216 83 6 1022 396 0 0 0 chr12 57398341 57398385 -63859145 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1022 804 115 0 0 chr12 57399778 57399900 -63857630 + (TC)n Simple_repeat Simple_repeat 1 122 0 6 1022 2022 31 0 0 chr12 57401157 57401384 -63856146 + L1Md_A LINE L1 6356 6582 0 6 1022 570 106 0 0 chr12 57401474 57401559 -63855971 + L1_Mus3 LINE L1 6548 6632 -6 6 1022 304 108 62 0 chr12 57401601 57401666 -63855864 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 6 1022 222 62 0 0 chr12 57402315 57402347 -63855183 + (CCA)n Simple_repeat Simple_repeat 3 34 0 6 1022 195 42 0 0 chr12 57402347 57402371 -63855159 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1022 204 135 0 0 chr12 57404029 57404066 -63853464 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1022 230 182 182 0 chr12 57404161 57404216 -63853314 - B4A SINE B4 -227 65 1 6 1022 4444 62 41 0 chr12 57404226 57404839 -63852691 - L1_Mus1 LINE L1 0 6567 6010 6 1022 9047 32 0 0 chr12 57405219 57406215 -63851315 + L1Md_T LINE L1 5587 6582 0 6 1022 212 217 0 21 chr12 57406234 57406281 -63851249 + T-rich Low_complexity Low_complexity 4 49 0 6 1022 287 248 19 56 chr12 57406872 57406979 -63850551 + AmnSINE1 SINE SINE 387 489 -86 6 1023 21 0 0 0 chr12 57409676 57409697 -63847833 + AT_rich Low_complexity Low_complexity 1 21 0 6 1023 937 168 89 25 chr12 57409702 57409904 -63847626 - B3 SINE B2 0 216 2 6 1023 1325 84 11 6 chr12 57410710 57410890 -63846640 - L1_Mus3 LINE L1 -18 6620 6440 6 1023 2542 93 47 26 chr12 57410907 57411292 -63846238 + L1_Mus4 LINE L1 5707 6099 -537 6 1023 210 229 0 0 chr12 57411388 57411436 -63846094 + T-rich Low_complexity Low_complexity 1 48 0 6 1023 24 0 0 0 chr12 57411521 57411545 -63845985 + AT_rich Low_complexity Low_complexity 1 24 0 6 1023 203 125 25 0 chr12 57411551 57411591 -63845939 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1023 397 257 37 19 chr12 57411888 57411995 -63845535 + B1F1 SINE Alu 1 109 -40 6 1023 391 339 0 8 chr12 57411995 57412011 -63845519 + ID_B1 SINE B4 82 203 -21 6 1023 387 0 0 0 chr12 57413383 57413426 -63844104 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1023 2695 46 178 0 chr12 57413892 57414241 -63843289 + IAPLTR2a LTR ERVK 1 411 0 6 1023 21 0 0 0 chr12 57414348 57414369 -63843161 + AT_rich Low_complexity Low_complexity 1 21 0 6 1023 315 276 48 76 chr12 57414993 57415075 -63842455 - MLT1J1 LTR MaLR -301 143 66 6 1023 1234 243 166 19 chr12 57415075 57415394 -63842136 - ORR1D2 LTR MaLR 0 370 5 6 1023 315 276 48 76 chr12 57415394 57415456 -63842074 - MLT1J1 LTR MaLR -379 65 3 6 1023 233 222 146 12 chr12 57416929 57417011 -63840519 + Lx8 LINE L1 7376 7468 -5 6 1023 469 238 12 0 chr12 57417363 57417527 -63840003 + GA-rich Low_complexity Low_complexity 4 169 0 6 1023 1286 61 0 0 chr12 57417765 57417913 -63839617 - B1_Mus1 SINE Alu 0 148 1 6 1023 211 391 0 0 chr12 57418023 57418110 -63839420 + B3 SINE B2 1 87 -129 6 1023 463 298 58 26 chr12 57418116 57418271 -63839259 + B4A SINE B4 107 266 -26 6 1023 492 62 0 0 chr12 57418271 57418335 -63839195 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1023 259 303 30 0 chr12 57419420 57419486 -63838044 + ID4 SINE ID 14 81 -2 6 1023 23 54 0 0 chr12 57420898 57420935 -63836595 + AT_rich Low_complexity Low_complexity 1 37 0 6 1023 227 189 0 0 chr12 57421477 57421530 -63836000 + A-rich Low_complexity Low_complexity 2 54 0 6 1023 1824 155 90 9 chr12 57421776 57422108 -63835422 - RLTR15 LTR ERVK 0 359 1 6 1023 1115 102 0 6 chr12 57422317 57422495 -63835035 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 1023 2631 278 86 30 chr12 57422504 57423443 -63834087 + RMER15-int LTR ERVL 1265 2256 -2743 6 1023 2479 135 28 0 chr12 57423445 57423838 -63833692 - Lx5 LINE L1 -383 6667 6264 6 1023 345 298 231 29 chr12 57424308 57424550 -63832980 + Tigger7 DNA MER2_type 9 299 -2192 6 1023 317 213 100 18 chr12 57424582 57424692 -63832838 + Tigger7 DNA MER2_type 2166 2284 -207 6 1023 241 241 19 0 chr12 57424709 57424763 -63832767 - B3 SINE B2 -13 203 149 6 1023 233 255 0 0 chr12 57425311 57425358 -63832172 + ID4_ SINE ID 24 70 -13 7 1023 237 338 30 71 chr12 57425879 57426048 -63831482 - L1MC1 LINE L1 -92 6241 6080 7 1023 795 173 28 14 chr12 57426058 57426199 -63831331 + B1_Mus1 SINE Alu 6 148 0 7 1023 320 296 109 36 chr12 57426279 57426500 -63831030 - L1MC1 LINE L1 -293 6040 5804 7 1023 444 329 133 27 chr12 57426803 57427134 -63830396 - Looper DNA PiggyBac -3 1555 1190 7 1023 268 257 141 51 chr12 57427333 57427489 -63830041 - Looper DNA PiggyBac -1207 351 182 7 1023 882 246 20 15 chr12 57427543 57427745 -63829785 - B3 SINE B2 -5 211 9 7 1023 251 277 71 12 chr12 57429171 57429255 -63828275 - MIR SINE MIR -113 149 61 7 1023 186 293 0 0 chr12 57429332 57429373 -63828157 - MIRm SINE MIR -8 268 228 7 1023 265 308 46 0 chr12 57429992 57430057 -63827473 + ID SINE ID 11 78 -146 7 1023 458 317 0 0 chr12 57430363 57430467 -63827063 - PB1D10 SINE Alu -11 106 3 7 1023 608 304 100 41 chr12 57430630 57430901 -63826629 - B4A SINE B4 -1 291 5 7 1023 226 221 55 68 chr12 57431701 57431774 -63825756 + MLT1L LTR MaLR 183 254 -356 7 1023 226 271 186 0 chr12 57432032 57432091 -63825439 + ID4 SINE ID 1 70 -13 7 1023 1041 77 119 31 chr12 57432305 57432465 -63825065 - L1Md_F2 LINE L1 -12 6570 6397 7 1023 1850 57 4 0 chr12 57432465 57432695 -63824835 + L1_Mus1 LINE L1 6139 6369 -198 7 1023 790 133 44 0 chr12 57435428 57435563 -63821967 - B1_Mus1 SINE Alu 0 148 8 7 1023 472 228 16 66 chr12 57435470 57435592 -63821938 - MT2B LTR ERVL -343 258 143 7 1023 1089 123 0 0 chr12 57435837 57435983 -63821547 - B1_Mus2 SINE Alu 0 147 2 7 1023 257 250 53 40 chr12 57436118 57436193 -63821337 + PB1D10 SINE Alu 41 116 -1 7 1023 321 243 32 45 chr12 57438479 57438634 -63818896 - RMER17A LTR ERVK -284 467 315 7 1023 25 83 0 0 chr12 57439541 57439601 -63817929 + AT_rich Low_complexity Low_complexity 1 60 0 7 1023 360 138 0 0 chr12 57442187 57442252 -63815278 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 7 1023 23 0 0 0 chr12 57444235 57444258 -63813272 + AT_rich Low_complexity Low_complexity 1 23 0 7 1023 25 31 0 0 chr12 57445247 57445279 -63812251 + AT_rich Low_complexity Low_complexity 1 32 0 7 1023 22 0 0 0 chr12 57445387 57445409 -63812121 + AT_rich Low_complexity Low_complexity 1 22 0 7 1023 22 80 0 0 chr12 57445419 57445469 -63812061 + AT_rich Low_complexity Low_complexity 1 50 0 7 1023 191 88 29 0 chr12 57446219 57446253 -63811277 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1023 1097 22 72 0 chr12 57447457 57447595 -63809935 + B1_Mus1 SINE Alu 1 148 0 7 1023 728 22 0 11 chr12 57447599 57447690 -63809840 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 7 1023 1111 102 0 0 chr12 57447824 57447971 -63809559 - B1_Mus2 SINE Alu 0 147 1 7 1023 292 289 60 94 chr12 57447992 57448141 -63809389 + MT2B LTR ERVL 135 278 -323 7 1023 736 124 41 16 chr12 57448026 57448149 -63809381 + B1_Mur4 SINE Alu 6 131 -19 7 1023 228 67 0 0 chr12 57448159 57448189 -63809341 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 7 1023 368 287 0 53 chr12 57448772 57448886 -63808644 - B3A SINE B2 -90 108 1 7 1023 679 190 43 7 chr12 57448931 57449069 -63808461 - B1_Mus1 SINE Alu 0 148 6 7 1023 1310 324 74 25 chr12 57449768 57450293 -63807237 - Tigger7 DNA MER2_type 0 550 1 7 1023 2108 53 0 0 chr12 57450449 57450712 -63806818 + L1Md_A LINE L1 6320 6582 0 7 1023 7941 27 4 1 chr12 57450728 57451654 -63805876 + L1Md_F2 LINE L1 5653 6581 -1 7 1023 340 151 150 88 chr12 57451737 57451781 -63805749 + MTC LTR MaLR 1 56 -365 7 1023 3304 50 10 0 chr12 57451781 57452198 -63805332 + BGLII LTR ERVK 1 421 0 7 1023 340 151 150 88 chr12 57452198 57452233 -63805297 + MTC LTR MaLR 57 85 -336 7 1023 851 169 230 0 chr12 57452264 57452442 -63805088 - Lx4A LINE L1 0 7058 6840 7 1023 1779 169 3 39 chr12 57452442 57452775 -63804755 + MTC LTR MaLR 96 416 -5 7 1023 646 271 123 0 chr12 57452800 57452970 -63804560 - ORR1D-int LTR MaLR -259 1321 1131 7 1023 1343 285 55 79 chr12 57453350 57453841 -63803689 - ORR1D-int LTR MaLR -369 1001 523 7 1023 2346 200 61 14 chr12 57453977 57454485 -63803045 + RMER5 LTR ERV1 3 534 0 7 1023 419 221 55 8 chr12 57454485 57454613 -63802917 + L1M5 LINE L1 3852 3985 -2161 7 1023 266 260 117 33 chr12 57454608 57454882 -63802648 + L1MA9 LINE L1 4261 4557 -1583 7 1023 207 188 0 0 chr12 57455504 57455552 -63801978 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 7 1023 1678 274 67 8 chr12 57455563 57456297 -63801233 + L1MA9 LINE L1 4542 5325 -821 7 1023 666 216 0 0 chr12 57456298 57456414 -63801116 + B1_Mus2 SINE Alu 32 147 0 7 1023 453 229 8 0 chr12 57456427 57456549 -63800981 + L1MA9 LINE L1 5316 5438 -859 7 1023 249 293 79 13 chr12 57456585 57456661 -63800869 + PB1 SINE Alu 47 127 0 7 1023 748 263 14 40 chr12 57456681 57456958 -63800572 + L1MA9 LINE L1 5442 5711 -589 7 1023 240 204 124 11 chr12 57457046 57457135 -63800395 + L1MA9 LINE L1 5851 5949 -363 7 1023 25 0 0 0 chr12 57457337 57457362 -63800168 + AT_rich Low_complexity Low_complexity 1 25 0 7 1023 294 233 110 0 chr12 57457519 57457592 -63799938 + MLT1A1 LTR MaLR 2 82 -326 7 1023 966 130 0 0 chr12 57457593 57457747 -63799783 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 7 1023 7162 101 19 12 chr12 57457761 57459301 -63798229 - Lx LINE L1 0 6654 5105 7 1023 21 0 0 0 chr12 57459301 57459322 -63798208 + AT_rich Low_complexity Low_complexity 1 21 0 7 1023 350 161 235 0 chr12 57459348 57459429 -63798101 - ID_B1 SINE B4 0 224 125 7 1023 985 130 0 0 chr12 57459529 57459675 -63797855 - B1_Mus1 SINE Alu -1 147 2 7 1023 327 196 40 80 chr12 57459677 57459777 -63797753 + B1F SINE Alu 52 147 -2 7 1023 269 158 35 0 chr12 57459860 57459917 -63797613 + G-rich Low_complexity Low_complexity 2 60 0 7 1023 485 220 197 55 chr12 57459917 57459963 -63797567 + ID_B1 SINE B4 1 209 -15 7 1023 895 82 2 5 chr12 57459963 57460100 -63797430 + B1_Mus1 SINE Alu 1 134 -15 7 1023 240 250 18 0 chr12 57460127 57460183 -63797347 + (TGGG)n Simple_repeat Simple_repeat 3 59 0 7 1023 24068 119 21 15 chr12 57460803 57465493 -63792037 - L1Md_F LINE L1 -768 5115 398 7 1023 302 0 0 26 chr12 57465533 57465572 -63791958 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 7 1023 754 169 54 0 chr12 57465573 57465703 -63791827 - B1_Mur4 SINE Alu -11 139 3 7 1023 351 0 0 0 chr12 57465932 57465971 -63791559 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1023 354 345 47 57 chr12 57465984 57466282 -63791248 - L1MEc LINE L1 -5986 414 120 7 1023 412 345 144 0 chr12 57466378 57466517 -63791013 - RSINE1 SINE B4 -4 161 3 7 1023 1202 40 0 0 chr12 57466618 57466768 -63790762 - L1Md_T LINE L1 -1 6581 6432 7 1023 758 328 28 24 chr12 57466769 57467194 -63790336 - L1M2 LINE L1 -958 5185 4759 7 1023 371 270 83 75 chr12 57467196 57467316 -63790214 - B1_Mur2 SINE Alu -23 126 6 7 1023 227 320 65 94 chr12 57467217 57467355 -63790175 - MT2B LTR ERVL -342 259 126 7 1023 252 0 0 0 chr12 57467357 57467385 -63790145 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1023 211 164 109 0 chr12 57467399 57467454 -63790076 - ID4_ SINE ID -19 64 4 7 1023 1021 232 31 18 chr12 57467454 57467686 -63789844 - B4A SINE B4 -56 236 1 7 1023 764 99 0 26 chr12 57467805 57467919 -63789611 + B1_Mur4 SINE Alu 34 144 -6 7 1023 561 282 23 8 chr12 57468090 57468222 -63789308 - B1F2 SINE Alu -5 144 11 7 1023 465 324 7 60 chr12 57468222 57468241 -63789289 - ID_B1 SINE B4 -5 219 77 7 1023 463 321 142 0 chr12 57469246 57469548 -63787982 + MER2 DNA MER2_type 1 345 0 7 1023 274 337 45 50 chr12 57469603 57469750 -63787780 + MIR SINE MIR 64 209 -53 7 1023 2000 155 11 22 chr12 57469750 57470113 -63787417 - RLTR15 LTR ERVK 0 359 1 7 1023 274 337 45 50 chr12 57470113 57470165 -63787365 + MIR SINE MIR 210 262 0 7 1023 824 209 0 117 chr12 57470481 57470720 -63786810 - B3 SINE B2 -4 212 2 7 1023 1328 148 23 0 chr12 57470854 57471070 -63786460 - RLTR15 LTR ERVK 0 359 139 7 1023 989 217 10 62 chr12 57471070 57471385 -63786145 - MYSERV6-int LTR ERVK -684 8275 8024 7 1023 8750 122 24 8 chr12 57471744 57474065 -63783465 + Lx LINE L1 4304 6652 -2 7 1023 625 251 174 87 chr12 57474070 57474345 -63783185 + ORR1E LTR MaLR 19 317 -42 7 1023 678 100 0 0 chr12 57474345 57474445 -63783085 + (TC)n Simple_repeat Simple_repeat 2 101 0 7 1023 26 0 0 0 chr12 57474874 57474900 -63782630 + AT_rich Low_complexity Low_complexity 1 26 0 7 1023 330 87 0 0 chr12 57474903 57474949 -63782581 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 7 1023 553 248 0 0 chr12 57474958 57475067 -63782463 - B1_Mur1 SINE Alu -9 140 32 7 1023 291 146 21 0 chr12 57475065 57475113 -63782417 + ORR1E LTR MaLR 322 370 0 7 1023 465 19 0 0 chr12 57475210 57475264 -63782266 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1023 514 274 108 47 chr12 57475602 57475816 -63781714 - RMER15 LTR ERVL -13 562 336 7 1023 27 0 0 0 chr12 57476213 57476240 -63781290 + AT_rich Low_complexity Low_complexity 1 27 0 7 1023 1514 237 59 79 chr12 57476805 57477009 -63780521 - RMER5 LTR ERV1 0 534 343 7 1023 1148 69 21 0 chr12 57477009 57477154 -63780376 - B1_Mus1 SINE Alu 0 148 1 7 1023 1514 237 59 79 chr12 57477154 57477494 -63780036 - RMER5 LTR ERV1 -192 342 1 7 1023 611 237 8 8 chr12 57478702 57478834 -63778696 + B1_Mur1 SINE Alu 1 132 -17 7 1023 195 184 0 0 chr12 57478856 57478894 -63778636 + GA-rich Low_complexity Low_complexity 2 39 0 7 1023 469 148 122 22 chr12 57479206 57479296 -63778234 - B1_Mus2 SINE Alu -7 140 42 7 1023 635 154 0 19 chr12 57479296 57479402 -63778128 + (TCTCTG)n Simple_repeat Simple_repeat 1 104 0 7 1023 255 0 5 155 chr12 57479403 57479610 -63777920 + (CTCTG)n Simple_repeat Simple_repeat 5 180 0 7 1023 702 157 0 17 chr12 57479610 57479727 -63777803 + (TCTCTG)n Simple_repeat Simple_repeat 5 119 0 7 1023 309 186 16 33 chr12 57479727 57479788 -63777742 - B1_Mur4 SINE Alu -90 60 1 7 1023 268 317 12 12 chr12 57479788 57479814 -63777716 - B4A SINE B4 -207 85 60 7 1023 26 0 0 0 chr12 57481118 57481144 -63776386 + AT_rich Low_complexity Low_complexity 1 26 0 8 1023 237 313 103 81 chr12 57481273 57481447 -63776083 - MLT1A1 LTR MaLR -186 222 45 8 1023 264 309 104 48 chr12 57482404 57482635 -63774895 + L2 LINE L2 1284 1527 -1892 8 1023 529 291 110 0 chr12 57483038 57483165 -63774365 - RSINE1 SINE B4 -22 143 3 8 1023 585 0 0 0 chr12 57484077 57484142 -63773388 + (TC)n Simple_repeat Simple_repeat 1 65 0 8 1023 297 0 0 0 chr12 57484142 57484174 -63773356 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1023 1201 176 18 5 chr12 57484541 57484763 -63772767 + URR1B DNA MER1_type 1 225 0 8 1023 299 345 87 33 chr12 57484894 57485044 -63772486 - MLT1I LTR MaLR -2 409 252 8 1023 436 377 72 23 chr12 57485094 57485357 -63772173 - MLT1I LTR MaLR -105 306 31 8 1023 314 359 0 10 chr12 57485468 57485572 -63771958 + PB1D10 SINE Alu 9 111 -6 8 1023 603 27 0 0 chr12 57485652 57485725 -63771805 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 8 1023 348 127 0 0 chr12 57486132 57486187 -63771343 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 8 1023 447 288 57 29 chr12 57486363 57486538 -63770992 + B3A SINE B2 1 180 -18 8 1023 186 43 0 0 chr12 57486654 57486677 -63770853 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1023 360 0 0 0 chr12 57487380 57487420 -63770110 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1023 192 77 0 0 chr12 57487688 57487714 -63769816 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1023 423 0 0 0 chr12 57487908 57487955 -63769575 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1023 198 0 0 0 chr12 57488030 57488052 -63769478 + (CTG)n Simple_repeat Simple_repeat 2 23 0 8 1023 486 217 76 34 chr12 57490648 57490767 -63766763 - RSINE1 SINE B4 -39 126 3 8 1023 662 248 7 0 chr12 57492509 57492654 -63764876 - RSINE1 SINE B4 -19 146 1 8 1023 204 336 32 48 chr12 57492823 57492948 -63764582 - MIR SINE MIR -30 232 110 8 1023 461 17 0 17 chr12 57493276 57493335 -63764195 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 1023 1255 80 63 0 chr12 57493713 57493888 -63763642 + B2_Mm2 SINE B2 2 187 -8 8 1023 435 83 0 0 chr12 57494328 57494388 -63763142 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1023 316 224 67 13 chr12 57494405 57494554 -63762976 - Lx9 LINE L1 -9 7635 7479 8 1023 392 302 20 12 chr12 57495004 57495141 -63762389 + B1F1 SINE Alu 1 141 -8 8 1023 475 353 185 49 chr12 57495148 57495657 -63761873 + L1M4b LINE L1 8 585 -6749 8 1023 654 191 42 42 chr12 57495771 57495913 -63761617 - B1_Mur1 SINE Alu -7 142 1 8 1023 476 353 150 31 chr12 57496184 57496291 -63761239 + LTR16E1 LTR ERVL 22 149 -389 8 1023 180 0 0 0 chr12 57496291 57496311 -63761219 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1023 476 353 150 31 chr12 57496311 57496490 -63761040 + LTR16E1 LTR ERVL 150 342 -196 8 1023 281 315 109 0 chr12 57496552 57496644 -63760886 + LTR16E1 LTR ERVL 387 506 -32 8 1023 2871 71 12 20 chr12 57497200 57497601 -63759929 + L1Md_F2 LINE L1 6182 6579 -3 8 1023 211 268 107 0 chr12 57497641 57497697 -63759833 + MIR SINE MIR 72 133 -129 8 1023 1799 193 16 32 chr12 57497700 57497916 -63759614 - ORR1D1 LTR MaLR 0 374 164 8 1023 312 27 0 0 chr12 57497916 57497953 -63759577 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1023 1799 193 16 32 chr12 57497953 57498111 -63759419 - ORR1D1 LTR MaLR -211 163 6 8 1023 228 298 60 26 chr12 57498122 57498239 -63759291 + MIRb SINE MIR 147 267 -1 8 1023 1102 74 27 0 chr12 57499247 57499395 -63758135 + B2_Mm2 SINE B2 2 153 -42 8 1023 261 0 0 0 chr12 57499400 57499429 -63758101 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 8 1023 265 360 151 15 chr12 57499442 57499648 -63757882 + L2c LINE L2 3107 3340 -47 8 1023 291 114 0 0 chr12 57500078 57500122 -63757408 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 1 1023 303 258 71 92 chr12 57500625 57500821 -63756709 + MIR SINE MIR 67 260 -8 2 1023 21 0 0 0 chr12 57502148 57502169 -63755361 + AT_rich Low_complexity Low_complexity 1 21 0 3 1023 408 40 0 0 chr12 57504291 57504341 -63753189 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1023 441 0 0 0 chr12 57504341 57504389 -63753141 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1023 186 43 0 0 chr12 57505275 57505298 -63752232 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 6 1023 307 266 15 71 chr12 57505393 57505591 -63751939 - Lx9 LINE L1 0 7644 7458 7 1023 353 279 7 39 chr12 57505619 57505772 -63751758 - Lx9 LINE L1 -127 7517 7370 8 1023 452 382 113 39 chr12 57507588 57507898 -63749632 - LTR16A LTR ERVL -13 438 106 9 1023 340 369 72 24 chr12 57508375 57508833 -63748697 - ERVL-E-int LTR ERVL -3394 2273 1794 1 1023 241 326 54 0 chr12 57509170 57509262 -63748268 - B1F1 SINE Alu -51 98 2 1 1023 308 318 28 0 chr12 57509569 57509676 -63747854 - ERVL-E-int LTR ERVL -3949 1047 938 1 1023 1259 48 29 0 chr12 57510401 57510712 -63746818 + (TAGA)n Simple_repeat Simple_repeat 1 320 0 1 1023 180 236 95 127 chr12 57511620 57511746 -63745784 - L3 LINE CR1 -3540 949 828 1 1023 660 235 98 20 chr12 57512264 57512468 -63745062 + ID_B1 SINE B4 5 224 0 1 1023 237 206 12 99 chr12 57512555 57512636 -63744894 - B4A SINE B4 -7 285 212 1 1023 1108 249 13 4 chr12 57512724 57512962 -63744568 - Lx8 LINE L1 -119 7354 7115 1 1023 347 304 20 0 chr12 57512963 57513065 -63744465 - B4A SINE B4 -70 222 119 1 1023 1364 246 64 3 chr12 57513223 57513373 -63744157 - RMER15 LTR ERVL -2 573 420 1 1023 450 0 0 0 chr12 57513373 57513423 -63744107 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1023 1364 235 48 54 chr12 57513423 57513763 -63743767 - RMER15 LTR ERVL -156 419 14 1 1023 351 0 0 0 chr12 57513764 57513803 -63743727 + (CATA)n Simple_repeat Simple_repeat 3 41 0 1 1023 658 276 82 116 chr12 57513817 57514170 -63743360 + MLT1A0 LTR MaLR 25 365 0 2 1023 1144 29 0 7 chr12 57514229 57514368 -63743162 + L1Md_T LINE L1 6444 6581 -1 2 1023 202 204 0 0 chr12 57514627 57514671 -63742859 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1023 832 241 59 0 chr12 57514673 57514843 -63742687 - B3A SINE B2 -16 182 3 2 1023 940 214 79 11 chr12 57515334 57515612 -63741918 - MER33 DNA MER1_type 0 324 28 2 1023 606 51 0 0 chr12 57518433 57518511 -63739019 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 2 1023 190 342 139 9 chr12 57518753 57518868 -63738662 + L2b LINE L2 3240 3369 -6 2 1023 308 230 26 123 chr12 57519593 57519707 -63737823 - MTD LTR MaLR -1 418 316 2 1023 522 301 16 49 chr12 57519714 57519899 -63737631 - MTD LTR MaLR -206 213 35 2 1023 435 19 0 0 chr12 57519973 57520025 -63737505 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1023 498 33 0 0 chr12 57520030 57520090 -63737440 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1023 312 303 51 36 chr12 57520187 57520324 -63737206 - MIRb SINE MIR -28 240 102 3 1023 541 239 136 5 chr12 57520427 57520633 -63736897 - L1MA8 LINE L1 -48 6243 6011 3 1023 517 385 84 9 chr12 57520996 57521316 -63736214 - LTR16A LTR ERVL -96 355 12 3 1023 33 0 0 0 chr12 57524250 57524283 -63733247 + AT_rich Low_complexity Low_complexity 1 33 0 3 1023 1720 93 33 13 chr12 57524646 57524917 -63732613 + L1Md_A LINE L1 5323 5612 -2270 3 1023 9137 30 0 0 chr12 57524917 57525913 -63731617 + L1Md_A LINE L1 5587 6582 0 3 1023 967 261 157 3 chr12 57525913 57526263 -63731267 - MLT1C LTR MaLR -60 407 4 3 1023 282 293 26 26 chr12 57526359 57526436 -63731094 + AluG_3 SINE Alu 149 225 -86 3 1023 350 309 158 18 chr12 57526964 57527185 -63730345 + MIR SINE MIR 2 253 -9 3 1023 360 0 0 0 chr12 57527543 57527583 -63729947 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1023 286 176 24 0 chr12 57528572 57528657 -63728873 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 3 1023 222 340 26 44 chr12 57529120 57529234 -63728296 + L2a LINE L2 3315 3426 0 4 1023 268 320 13 13 chr12 57529290 57529366 -63728164 + ID4 SINE ID 8 83 0 4 1023 520 254 64 14 chr12 57529391 57529531 -63727999 + B1_Mur1 SINE Alu 2 148 -1 4 1023 687 251 75 17 chr12 57529850 57530011 -63727519 + B4 SINE B4 97 269 -23 4 1023 387 0 0 0 chr12 57530011 57530054 -63727476 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1023 687 251 75 17 chr12 57530054 57530066 -63727464 + B4 SINE B4 270 280 -12 4 1023 1096 152 42 42 chr12 57530582 57530795 -63726735 - URR1A DNA MER1_type 0 226 14 4 1023 9211 119 31 2 chr12 57530795 57532310 -63725220 + Lx4B LINE L1 5485 7058 0 4 1023 328 339 147 16 chr12 57533934 57534237 -63723293 + L2b LINE L2 2801 3132 -243 4 1023 216 0 0 0 chr12 57534239 57534263 -63723267 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1023 285 342 0 0 chr12 57534745 57534818 -63722712 - ID4_ SINE ID -9 74 2 4 1023 409 268 26 26 chr12 57534926 57535041 -63722489 + RSINE1 SINE B4 51 165 0 5 1023 1050 253 92 92 chr12 57535771 57536150 -63721380 - MTE2a LTR MaLR 0 379 1 5 1023 492 229 135 27 chr12 57538502 57538650 -63718880 - RSINE1 SINE B4 0 165 2 5 1023 266 353 15 7 chr12 57539884 57540021 -63717509 - L1MA10 LINE L1 -23 6311 6174 5 1023 1271 68 0 0 chr12 57540064 57540210 -63717320 + B1_Mus2 SINE Alu 2 147 0 5 1024 209 239 15 15 chr12 57540680 57540748 -63716782 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 5 1024 214 186 8 71 chr12 57543537 57543664 -63713866 + CT-rich Low_complexity Low_complexity 2 120 0 5 1024 249 356 51 70 chr12 57544099 57544256 -63713274 + MLT1K LTR MaLR 414 567 -28 5 1024 7184 47 1 0 chr12 57544348 57545161 -63712369 - L1_Mus1 LINE L1 -4 6563 5750 5 1024 4241 88 3 7 chr12 57545161 57545736 -63711794 + L1_Mus1 LINE L1 5170 5742 -141 5 1024 426 271 50 17 chr12 57545897 57546017 -63711513 - L2a LINE L2 0 3426 3303 5 1024 333 331 70 13 chr12 57545899 57546055 -63711475 - MIRm SINE MIR 0 276 112 6 1024 423 320 55 82 chr12 57546081 57546374 -63711156 - MLT1H1 LTR MaLR -11 544 194 6 1024 183 372 75 7 chr12 57546665 57546811 -63710719 - L2a LINE L2 -327 3099 2944 5 1024 254 370 114 42 chr12 57546867 57547175 -63710355 - L2a LINE L2 -594 2825 2496 5 1024 1573 252 66 31 chr12 57548785 57549272 -63708258 + RMER5 LTR ERV1 1 504 -30 6 1024 288 0 0 0 chr12 57549428 57549460 -63708070 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1024 1013 251 18 23 chr12 57551601 57551821 -63705709 + ID_B1 SINE B4 3 221 -3 6 1024 273 298 52 9 chr12 57552181 57552296 -63705234 + L1MC4a LINE L1 5831 5950 -1932 6 1024 186 171 0 0 chr12 57552305 57552346 -63705184 + (CATA)n Simple_repeat Simple_repeat 3 43 0 6 1024 3103 266 77 21 chr12 57552470 57553405 -63704125 + Lx8 LINE L1 6110 7096 -377 6 1024 2040 97 55 0 chr12 57553405 57553713 -63703817 - IAPEY2_LTR LTR ERVK 0 357 33 6 1024 905 280 71 17 chr12 57553713 57554007 -63703523 + Lx8 LINE L1 7092 7401 -72 6 1024 744 241 14 0 chr12 57554134 57554279 -63703251 + B1_Mus1 SINE Alu 2 148 0 6 1024 488 304 33 33 chr12 57554346 57554499 -63703031 + RSINE1 SINE B4 3 155 -10 7 1024 236 264 264 0 chr12 57554741 57554828 -63702702 + PB1D10 SINE Alu 1 110 -7 7 1024 504 155 0 40 chr12 57554880 57555028 -63702502 + (TG)n Simple_repeat Simple_repeat 1 142 0 7 1024 364 64 0 0 chr12 57555031 57555078 -63702452 - HAL1-3A_ME LINE L1 -846 2012 1966 7 1024 272 102 20 0 chr12 57555321 57555370 -63702160 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1024 207 0 0 0 chr12 57558130 57558153 -63699377 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 7 1024 204 200 0 0 chr12 57558510 57558560 -63698970 + G-rich Low_complexity Low_complexity 6 55 0 7 1024 324 0 0 0 chr12 57561480 57561516 -63696014 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1024 336 266 77 6 chr12 57561715 57561885 -63695645 - Charlie4a DNA MER1_type -68 440 259 7 1024 533 221 52 17 chr12 57561911 57562026 -63695504 - PB1D9 SINE Alu 0 120 2 7 1024 313 324 97 26 chr12 57561933 57562047 -63695483 - B4 SINE B4 -105 187 66 8 1024 312 243 113 42 chr12 57562037 57562179 -63695351 - Charlie4a DNA MER1_type -245 263 112 7 1024 240 280 54 0 chr12 57562723 57562816 -63694714 + MER53 DNA hAT 96 193 0 8 1024 588 284 18 55 chr12 57563466 57563630 -63693900 + RSINE1 SINE B4 8 165 0 8 1024 267 215 0 0 chr12 57563642 57563707 -63693823 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1024 1479 278 101 68 chr12 57563756 57564727 -63692803 + Lx7 LINE L1 5066 6109 -1587 8 1024 291 122 0 0 chr12 57564727 57564776 -63692754 + (GGGGA)n Simple_repeat Simple_repeat 4 52 0 8 1024 180 0 0 0 chr12 57564799 57564819 -63692711 + (GGGAA)n Simple_repeat Simple_repeat 1 20 0 8 1024 1280 34 0 26 chr12 57566039 57566190 -63691340 - B1_Mm SINE Alu 0 147 1 8 1024 313 135 30 40 chr12 57566210 57566310 -63691220 + (TA)n Simple_repeat Simple_repeat 1 99 0 8 1024 788 272 154 55 chr12 57566594 57566847 -63690683 - B4A SINE B4 -14 278 1 8 1024 4256 177 47 29 chr12 57567223 57567886 -63689644 + Lx5 LINE L1 6234 6895 -155 9 1024 531 0 0 0 chr12 57567886 57567945 -63689585 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1024 4256 177 47 29 chr12 57567945 57568083 -63689447 + Lx5 LINE L1 6896 7049 -1 9 1024 252 211 17 17 chr12 57568204 57568262 -63689268 + B3 SINE B2 1 58 -158 9 1024 859 114 11 0 chr12 57568326 57568501 -63689029 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 9 1024 237 33 0 0 chr12 57568521 57568551 -63688979 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 9 1024 588 298 63 34 chr12 57568551 57568756 -63688774 - ID_B1 SINE B4 -11 213 3 9 1024 21 0 0 0 chr12 57569961 57569982 -63687548 + AT_rich Low_complexity Low_complexity 1 21 0 9 1024 24 32 0 0 chr12 57569992 57570023 -63687507 + AT_rich Low_complexity Low_complexity 1 31 0 9 1024 1552 68 21 0 chr12 57570774 57570964 -63686566 + B2_Mm2 SINE B2 2 195 0 9 1024 728 285 220 40 chr12 57571110 57571538 -63685992 + MLT1D LTR MaLR 1 505 0 9 1024 516 157 41 0 chr12 57573117 57573264 -63684266 + (TG)n Simple_repeat Simple_repeat 1 153 0 9 1024 380 154 0 15 chr12 57573264 57573330 -63684200 - HAL1-3A_ME LINE L1 -831 2027 1963 1 1024 212 354 0 0 chr12 57573543 57573608 -63683922 + ID4 SINE ID 2 66 -17 1 1024 885 141 229 6 chr12 57574892 57575071 -63682459 + URR1A DNA MER1_type 1 219 -7 1 1024 428 283 32 26 chr12 57574934 57575090 -63682440 - CYRA11_Mm Unknown Y-chromosome -301 316 160 1 1024 1174 218 80 3 chr12 57575705 57576032 -63681498 + Lx9 LINE L1 7268 7619 -25 1 1024 180 0 0 0 chr12 57576201 57576221 -63681309 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 1024 249 225 44 70 chr12 57576240 57576362 -63681168 - L1MB1 LINE L1 -157 6032 5921 1 1024 924 141 227 5 chr12 57579151 57579336 -63678194 + URR1A DNA MER1_type 1 226 0 1 1024 309 121 0 0 chr12 57579489 57579533 -63677997 - MT2A LTR ERVL -2 531 488 1 1024 210 37 0 0 chr12 57579533 57579560 -63677970 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 1024 309 121 0 0 chr12 57579560 57579581 -63677949 - MT2A LTR ERVL -46 487 467 1 1024 688 119 17 0 chr12 57579583 57579701 -63677829 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 1 1024 726 145 0 0 chr12 57580026 57580192 -63677338 + (GA)n Simple_repeat Simple_repeat 1 166 0 1 1024 2938 56 18 3 chr12 57580322 57580604 -63676926 + ORR1A1 LTR MaLR 1 282 -64 1 1024 261 0 0 0 chr12 57580604 57580633 -63676897 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1024 2938 56 18 3 chr12 57580633 57580691 -63676839 + ORR1A1 LTR MaLR 283 346 0 1 1024 1026 192 111 9 chr12 57580966 57581192 -63676338 - MTD LTR MaLR 0 419 171 1 1024 804 242 27 11 chr12 57581197 57581381 -63676149 - B3 SINE B2 -20 196 10 1 1024 229 109 43 0 chr12 57581954 57582000 -63675530 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1024 935 200 89 0 chr12 57582098 57582288 -63675242 + B3 SINE B2 3 209 -7 1 1024 629 288 10 50 chr12 57582351 57582552 -63674978 - B3A SINE B2 -5 193 1 1 1024 24 32 0 0 chr12 57582717 57582748 -63674782 + AT_rich Low_complexity Low_complexity 1 31 0 1 1024 3131 201 62 8 chr12 57585389 57586017 -63671513 + Lx5 LINE L1 6386 7047 -3 1 1024 548 226 17 9 chr12 57586051 57586167 -63671363 + PB1D10 SINE Alu 1 117 0 1 1024 225 289 167 7 chr12 57586996 57587146 -63670384 - MER102c DNA MER1_type -51 280 107 1 1024 821 185 0 0 chr12 57587227 57587357 -63670173 - B3 SINE B2 -86 130 1 1 1024 484 346 0 18 chr12 57587434 57587599 -63669931 + RSINE1 SINE B4 3 164 -1 1 1024 358 219 61 22 chr12 57587628 57587719 -63669811 + B1_Mus2 SINE Alu 2 100 -17 1 1024 279 288 14 14 chr12 57588545 57588619 -63668911 - ID4 SINE ID -1 82 9 1 1024 23 54 0 0 chr12 57588900 57588937 -63668593 + AT_rich Low_complexity Low_complexity 1 37 0 1 1024 186 103 0 0 chr12 57588938 57588967 -63668563 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 1 1024 380 306 87 39 chr12 57588970 57589346 -63668184 + L1MC LINE L1 5346 5735 -2147 1 1024 199 337 24 59 chr12 57589934 57590019 -63667511 + L4 LINE RTE 1198 1279 -750 1 1024 1112 193 49 10 chr12 57590825 57591029 -63666501 + B3 SINE B2 4 215 -1 1 1024 814 313 134 38 chr12 57592733 57593234 -63664296 - MLT1F2 LTR MaLR -11 549 1 1 1024 450 259 17 112 chr12 57593800 57593978 -63663552 + RSINE1 SINE B4 3 163 -2 1 1024 455 71 221 12 chr12 57595670 57595756 -63661774 + URR1B DNA MER1_type 122 225 0 1 1024 369 0 0 0 chr12 57595765 57595806 -63661724 + (TAA)n Simple_repeat Simple_repeat 1 41 0 1 1024 686 179 20 48 chr12 57595817 57595964 -63661566 + B1_Mur2 SINE Alu 6 148 -1 1 1024 1027 215 0 10 chr12 57595974 57596167 -63661363 + B3A SINE B2 2 192 -6 1 1024 314 301 19 46 chr12 57596636 57596744 -63660786 + PB1D10 SINE Alu 4 108 -9 1 1024 687 132 0 0 chr12 57596749 57596863 -63660667 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 1024 832 199 20 0 chr12 57597602 57597748 -63659782 + B1_Mur2 SINE Alu 1 149 0 1 1024 919 66 36 0 chr12 57597754 57597891 -63659639 + (GGAAA)n Simple_repeat Simple_repeat 5 146 0 1 1024 735 161 206 54 chr12 57597953 57598137 -63659393 + B3 SINE B2 2 213 -3 1 1024 402 79 0 0 chr12 57598226 57598289 -63659241 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1024 1007 216 17 0 chr12 57598293 57598474 -63659056 - B3 SINE B2 -32 184 1 1 1024 605 257 30 35 chr12 57598633 57598831 -63658699 - L1MB5 LINE L1 -17 6157 5961 1 1024 1548 229 28 6 chr12 57599418 57599738 -63657792 + Lx6 LINE L1 6965 7291 -169 1 1024 182 118 29 0 chr12 57599857 57599891 -63657639 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1024 319 340 47 34 chr12 57600019 57600168 -63657362 - MIRb SINE MIR -109 159 9 1 1024 513 0 0 0 chr12 57600405 57600462 -63657068 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1024 1850 211 111 24 chr12 57600554 57601059 -63656471 + RMER15 LTR ERVL 27 575 0 1 1024 209 30 0 57 chr12 57601318 57601353 -63656177 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1024 778 160 46 0 chr12 57601357 57601488 -63656042 - B1_Mur4 SINE Alu -8 142 6 1 1024 359 276 94 33 chr12 57601778 57601958 -63655572 + MER53 DNA hAT 1 191 -2 1 1024 346 306 117 39 chr12 57603715 57603997 -63653533 + Lx8 LINE L1 7153 7456 -17 1 1024 21 71 0 0 chr12 57604052 57604094 -63653436 + AT_rich Low_complexity Low_complexity 1 42 0 1 1024 248 111 19 0 chr12 57606664 57606718 -63650812 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 1 1024 867 35 9 9 chr12 57606718 57606834 -63650696 - B1_Mus2 SINE Alu -1 146 31 1 1024 264 77 0 0 chr12 57606931 57606970 -63650560 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1024 186 133 0 0 chr12 57607425 57607455 -63650075 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1024 1228 74 0 7 chr12 57607705 57607854 -63649676 + B1_Mus1 SINE Alu 1 148 0 1 1024 203 188 0 20 chr12 57607854 57607903 -63649627 + A-rich Low_complexity Low_complexity 4 51 0 1 1024 881 164 7 0 chr12 57608044 57608179 -63649351 + B1_Mus1 SINE Alu 1 136 -12 1 1024 351 0 0 0 chr12 57608179 57608218 -63649312 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 1 1024 885 197 8 0 chr12 57608476 57608715 -63648815 + GA-rich Low_complexity Low_complexity 1 241 0 1 1024 2209 55 0 0 chr12 57608918 57609173 -63648357 - L1_Mus1 LINE L1 0 6567 6313 1 1024 232 0 105 0 chr12 57611726 57611764 -63645766 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 1 1024 495 227 52 15 chr12 57615890 57616024 -63641506 - ID_B1 SINE B4 -7 217 79 1 1024 432 0 0 0 chr12 57616658 57616706 -63640824 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1024 657 223 71 14 chr12 57617109 57617250 -63640280 + B1_Mur2 SINE Alu 1 149 0 1 1024 755 128 7 26 chr12 57617258 57617338 -63640192 + polypurine Low_complexity Low_complexity 1 78 0 1 1024 1107 134 0 0 chr12 57617338 57617517 -63640013 + (GGA)n Simple_repeat Simple_repeat 2 180 0 1 1024 755 128 7 26 chr12 57617517 57617589 -63639941 + polypurine Low_complexity Low_complexity 79 150 0 1 1024 26 0 0 0 chr12 57618322 57618348 -63639182 + AT_rich Low_complexity Low_complexity 1 26 0 1 1024 339 44 0 0 chr12 57621840 57621885 -63635645 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 1024 1229 89 0 11 chr12 57622923 57623105 -63634425 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1024 195 125 0 0 chr12 57623120 57623160 -63634370 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1024 544 228 40 37 chr12 57624761 57624961 -63632569 - B3 SINE B2 -2 193 3 1 1024 2183 93 65 20 chr12 57626171 57626522 -63631008 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1024 204 122 0 0 chr12 57626844 57626885 -63630645 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1024 23 0 0 0 chr12 57626944 57626967 -63630563 + AT_rich Low_complexity Low_complexity 1 23 0 1 1024 205 83 41 20 chr12 57631679 57631728 -63625802 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1 1024 207 0 0 0 chr12 57632345 57632368 -63625162 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1024 238 277 0 30 chr12 57633649 57633716 -63623814 + GA-rich Low_complexity Low_complexity 5 69 0 1 1024 900 111 0 0 chr12 57633727 57633862 -63623668 + (GAA)n Simple_repeat Simple_repeat 2 136 0 1 1024 198 71 0 0 chr12 57634415 57634443 -63623087 + (CCG)n Simple_repeat Simple_repeat 3 30 0 1 1024 26 0 0 0 chr12 57635640 57635666 -63621864 + GC_rich Low_complexity Low_complexity 1 26 0 1 1024 203 250 0 22 chr12 57636062 57636107 -63621423 + polypurine Low_complexity Low_complexity 1 44 0 1 1024 555 56 0 0 chr12 57636415 57636486 -63621044 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1024 203 303 26 13 chr12 57640335 57640412 -63617118 + MIRc SINE MIR 18 95 -173 1 1024 623 250 60 18 chr12 57640762 57640929 -63616601 + B3 SINE B2 1 174 -42 1 1024 504 0 0 0 chr12 57640934 57640990 -63616540 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1024 198 0 0 0 chr12 57640990 57641011 -63616519 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1024 356 214 0 0 chr12 57641896 57641966 -63615564 - ID4 SINE ID -9 74 5 1 1024 1925 296 97 65 chr12 57642880 57643881 -63613649 + MTE-int LTR MaLR 379 1411 -169 1 1024 954 0 0 0 chr12 57644060 57644166 -63613364 + (TTC)n Simple_repeat Simple_repeat 3 108 0 1 1024 1284 76 40 23 chr12 57644167 57644343 -63613187 - B2_Mm2 SINE B2 -14 181 3 1 1024 511 256 123 37 chr12 57644582 57644619 -63612911 - B3 SINE B2 -6 210 168 1 1024 315 0 0 0 chr12 57644619 57644654 -63612876 + (TATG)n Simple_repeat Simple_repeat 4 38 0 1 1024 511 256 123 37 chr12 57644654 57644803 -63612727 - B3 SINE B2 -49 167 8 1 1024 260 310 54 104 chr12 57644808 57644912 -63612618 - MLT1A LTR MaLR -95 279 168 1 1024 873 231 14 23 chr12 57644912 57645129 -63612401 - B3 SINE B2 0 216 2 2 1024 260 310 54 104 chr12 57645129 57645265 -63612265 - MLT1A LTR MaLR -207 167 51 1 1024 243 322 79 52 chr12 57645244 57645556 -63611974 + MLT1A1 LTR MaLR 52 404 -4 2 1024 231 263 144 21 chr12 57645552 57645649 -63611881 - MLT1B LTR MaLR -281 109 1 2 1024 251 344 19 32 chr12 57645911 57646067 -63611463 - L1MA10 LINE L1 -10 6324 6171 2 1024 1012 224 0 0 chr12 57646315 57646511 -63611019 - B3 SINE B2 -13 203 8 2 1024 298 281 188 15 chr12 57646595 57646797 -63610733 - MLT1D LTR MaLR -2 503 267 2 1024 225 288 62 0 chr12 57647052 57647132 -63610398 - PB1D9 SINE Alu -6 114 30 2 1024 281 265 36 0 chr12 57647161 57647244 -63610286 - L1MD LINE L1 -3105 3041 2956 2 1024 1227 61 32 27 chr12 57647259 57647445 -63610085 - B2_Mm2 SINE B2 -7 188 2 2 1024 290 156 16 0 chr12 57647579 57647643 -63609887 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 2 1024 230 253 66 13 chr12 57647659 57647735 -63609795 + Lx8 LINE L1 7392 7471 -2 2 1024 264 302 23 0 chr12 57647812 57647898 -63609632 - PB1D10 SINE Alu -2 115 28 2 1024 859 353 38 60 chr12 57647945 57648692 -63608838 - L1MEg LINE L1 -3279 3121 2392 2 1024 339 182 76 0 chr12 57648717 57648783 -63608747 - ID4 SINE ID -9 74 4 2 1024 21 36 0 0 chr12 57648865 57648893 -63608637 + AT_rich Low_complexity Low_complexity 1 28 0 2 1024 334 262 38 19 chr12 57648947 57649052 -63608478 + PB1D9 SINE Alu 14 120 0 2 1024 421 289 113 15 chr12 57649091 57649295 -63608235 - L1MEg LINE L1 -4251 2230 2007 2 1024 553 266 77 0 chr12 57649387 57649556 -63607974 - B3A SINE B2 -16 182 1 2 1024 29 47 0 0 chr12 57650317 57650360 -63607170 + AT_rich Low_complexity Low_complexity 1 43 0 2 1024 697 162 17 0 chr12 57650360 57650477 -63607053 - B1_Mus2 SINE Alu -20 127 9 2 1024 447 244 23 1 chr12 57650576 57650688 -63606842 + PB1D10 SINE Alu 1 123 -4 2 1024 480 111 0 0 chr12 57650698 57650770 -63606760 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1024 551 259 0 0 chr12 57650932 57651063 -63606467 - B1_Mur1 SINE Alu -7 142 12 2 1024 2910 46 19 3 chr12 57651063 57651430 -63606100 - L1Md_F3 LINE L1 -1 6583 6211 2 1024 402 214 48 0 chr12 57651436 57651520 -63606010 - Lx8 LINE L1 -132 7341 7254 2 1024 572 202 20 60 chr12 57651554 57651637 -63605893 - L1MEg LINE L1 -4642 1854 1706 2 1024 2291 117 0 50 chr12 57651637 57651980 -63605550 - ORR1A3 LTR MaLR 0 326 1 2 1024 572 233 22 58 chr12 57651980 57652068 -63605462 - L1MEg LINE L1 -4721 1775 1620 2 1024 21 0 0 0 chr12 57652121 57652142 -63605388 + AT_rich Low_complexity Low_complexity 1 21 0 2 1024 396 117 0 0 chr12 57652143 57652220 -63605310 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 2 1024 278 291 135 10 chr12 57652329 57652433 -63605097 - PB1D10 SINE Alu 0 117 1 2 1024 3398 205 76 127 chr12 57652854 57653899 -63603631 + RMER1B Other Other 4 994 -72 2 1024 230 213 0 0 chr12 57653900 57653947 -63603583 - B3A SINE B2 -150 48 2 2 1024 219 240 240 0 chr12 57654097 57654193 -63603337 + PB1D7 SINE Alu 1 119 -1 2 1024 414 0 0 0 chr12 57654848 57654894 -63602636 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1024 413 248 80 35 chr12 57655325 57655553 -63601977 + L1MEf LINE L1 1580 1938 -5164 2 1024 462 181 24 12 chr12 57655795 57655957 -63601573 + (TA)n Simple_repeat Simple_repeat 2 165 0 2 1024 276 30 0 0 chr12 57655957 57655990 -63601540 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1024 303 262 12 59 chr12 57656001 57656086 -63601444 - ID2 SINE ID -1 82 2 2 1024 845 189 7 7 chr12 57656276 57656425 -63601105 + B1_Mur3 SINE Alu 1 149 0 2 1024 1285 107 0 5 chr12 57656435 57656623 -63600907 + B2_Mm2 SINE B2 2 188 -7 2 1024 549 207 82 8 chr12 57656668 57656790 -63600740 - B3 SINE B2 -9 207 77 2 1024 272 180 152 9 chr12 57656955 57657067 -63600463 - Lx9 LINE L1 0 7644 7517 2 1024 396 0 0 0 chr12 57657067 57657111 -63600419 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1024 1731 207 126 0 chr12 57657171 57657553 -63599977 - Lx9 LINE L1 -729 6915 6486 2 1024 1179 90 0 0 chr12 57657568 57657734 -63599796 + (CAG)n Simple_repeat Simple_repeat 1 166 0 2 1024 749 295 30 13 chr12 57658751 57658988 -63598542 + B4A SINE B4 8 248 -44 2 1024 960 144 7 0 chr12 57658994 57659140 -63598390 + B1_Mus1 SINE Alu 2 148 0 2 1024 934 144 0 17 chr12 57659140 57659317 -63598213 + GA-rich Low_complexity Low_complexity 1 174 0 2 1024 344 277 52 37 chr12 57659968 57660103 -63597427 - B1F1 SINE Alu -12 137 1 2 1024 361 273 141 0 chr12 57660108 57660229 -63597301 - B1F SINE Alu -7 142 5 2 1024 29908 122 16 9 chr12 57660327 57666287 -63591243 - L1_Mus3 LINE L1 -8 6630 635 2 1024 221 186 23 0 chr12 57666563 57666606 -63590924 + CT-rich Low_complexity Low_complexity 1 44 0 2 1024 281 26 0 26 chr12 57666889 57666928 -63590602 + (TAA)n Simple_repeat Simple_repeat 3 40 0 2 1024 5542 178 33 16 chr12 57666928 57667937 -63589593 - Lx2B LINE L1 -28 6972 5945 2 1024 3053 68 36 3 chr12 57667937 57668323 -63589207 + MTB LTR MaLR 1 399 -1 2 1024 5542 178 33 16 chr12 57668323 57668334 -63589196 - Lx2B LINE L1 -1056 5944 5934 2 1024 1035 87 0 0 chr12 57668528 57668689 -63588841 + (CA)n Simple_repeat Simple_repeat 1 161 0 2 1024 873 92 96 30 chr12 57668833 57668968 -63588562 - B1_Mur4 SINE Alu -5 145 2 2 1024 213 320 39 20 chr12 57670230 57670332 -63587198 + MIRb SINE MIR 97 200 -68 2 1024 444 308 20 27 chr12 57670773 57670923 -63586607 - RSINE1 SINE B4 -8 157 9 2 1024 303 28 0 0 chr12 57671064 57671100 -63586430 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1024 917 163 17 29 chr12 57671169 57671363 -63586167 - URR1B DNA MER1_type -4 221 11 2 1024 832 209 35 30 chr12 57671371 57671603 -63585927 - B4A SINE B4 -58 234 2 2 1025 681 102 20 0 chr12 57672549 57672647 -63584883 - B2_Mm2 SINE B2 -95 100 1 2 1025 691 224 32 27 chr12 57672665 57672853 -63584677 + MTEa LTR MaLR 184 372 -7 2 1025 992 111 0 20 chr12 57672876 57673023 -63584507 - B1_Mus2 SINE Alu 0 147 4 2 1025 2907 56 24 0 chr12 57674190 57674564 -63582966 - L1Md_F2 LINE L1 0 6582 6200 2 1025 258 282 99 33 chr12 57675259 57675380 -63582150 + MLT1A1 LTR MaLR 14 142 -266 2 1025 420 20 0 0 chr12 57675465 57675514 -63582016 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1025 1169 73 114 6 chr12 57675707 57675873 -63581657 + B2_Mm2 SINE B2 2 185 -10 2 1025 361 312 72 86 chr12 57676151 57676442 -63581088 - L1MB7 LINE L1 -9 6175 5889 2 1025 842 227 20 10 chr12 57677018 57677218 -63580312 - B3 SINE B2 0 216 15 2 1025 469 158 0 0 chr12 57677222 57677304 -63580226 + B3A SINE B2 3 84 -114 2 1025 232 70 47 0 chr12 57677464 57677507 -63580023 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1025 783 189 21 0 chr12 57677763 57677906 -63579624 + B1_Mur2 SINE Alu 4 149 0 2 1025 267 54 0 0 chr12 57677915 57677952 -63579578 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1025 4009 92 54 0 chr12 57678209 57678763 -63578767 - MT2B2 LTR ERVL 0 584 1 2 1025 3134 20 0 0 chr12 57678916 57679262 -63578268 - ORR1A0 LTR MaLR 0 346 1 2 1025 39721 31 10 6 chr12 57679308 57685688 -63571842 - L1Md_A LINE L1 -2 6580 180 2 1025 1503 150 0 0 chr12 57685961 57686187 -63571343 + URR1A DNA MER1_type 1 226 0 2 1025 261 0 0 0 chr12 57687034 57687063 -63570467 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1025 498 272 66 0 chr12 57687064 57687200 -63570330 - RSINE1 SINE B4 -18 147 3 2 1025 243 250 111 30 chr12 57687287 57687386 -63570144 - B1F1 SINE Alu -1 148 42 2 1025 21 71 0 0 chr12 57687781 57687823 -63569707 + AT_rich Low_complexity Low_complexity 1 42 0 2 1025 229 246 0 0 chr12 57687832 57687889 -63569641 - B1F1 SINE Alu -6 143 87 2 1025 255 254 105 35 chr12 57688031 57688145 -63569385 + L1MD LINE L1 4490 4611 -1535 2 1025 369 196 8 108 chr12 57688181 57688198 -63569332 + MT2B LTR ERVL 150 154 -447 2 1025 805 61 0 0 chr12 57688198 57688312 -63569218 + B1_Mus1 SINE Alu 1 114 -34 2 1025 437 117 0 25 chr12 57688313 57688392 -63569138 + (GGA)n Simple_repeat Simple_repeat 1 77 0 2 1025 231 323 97 42 chr12 57689033 57689198 -63568332 + MER3 DNA MER1_type 36 209 0 2 1025 532 305 46 0 chr12 57689198 57689227 -63568303 - MER3 DNA MER1_type -154 55 19 2 1025 431 51 0 0 chr12 57689871 57689930 -63567600 - RMER1B Other Other -1 1065 1007 2 1025 1742 192 291 18 chr12 57689929 57690379 -63567151 - RMER1B Other Other -283 783 211 2 1025 2899 62 28 25 chr12 57691833 57692228 -63565302 + MTA_Mm LTR MaLR 1 396 0 2 1025 281 54 0 0 chr12 57692403 57692440 -63565090 + MTB LTR MaLR 364 400 0 2 1025 180 152 0 0 chr12 57693119 57693152 -63564378 + CT-rich Low_complexity Low_complexity 2 34 0 2 1025 180 306 32 0 chr12 57693407 57693469 -63564061 - MIRb SINE MIR -175 93 30 2 1025 1285 103 16 21 chr12 57693830 57694018 -63563512 + B2_Mm2 SINE B2 1 187 -8 2 1025 324 0 0 0 chr12 57694254 57694290 -63563240 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1025 203 125 0 24 chr12 57695252 57695293 -63562237 + (AGGGGG)n Simple_repeat Simple_repeat 6 45 0 2 1025 733 294 65 25 chr12 57695408 57695684 -63561846 + B4 SINE B4 6 292 0 2 1025 375 227 0 0 chr12 57695684 57695781 -63561749 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 1025 1415 28 56 6 chr12 57695958 57696137 -63561393 - L1Md_F2 LINE L1 -8 6574 6387 2 1025 255 190 0 33 chr12 57697015 57697075 -63560455 + PB1D9 SINE Alu 2 59 -61 2 1025 198 192 0 0 chr12 57697079 57697131 -63560399 + GA-rich Low_complexity Low_complexity 2 53 0 3 1025 403 247 0 0 chr12 57697135 57697224 -63560306 + B1_Mur1 SINE Alu 41 129 -20 3 1025 278 377 37 51 chr12 57697823 57698038 -63559492 + MER74A LTR ERVL 321 532 -26 3 1025 211 265 9 38 chr12 57698075 57698181 -63559349 + (CAAA)n Simple_repeat Simple_repeat 2 104 0 3 1025 283 173 58 0 chr12 57698181 57698233 -63559297 - Lx7 LINE L1 -375 7321 7267 3 1025 730 181 83 0 chr12 57698224 57698368 -63559162 - Lx7 LINE L1 -1374 6322 6167 3 1025 303 335 48 5 chr12 57698397 57698604 -63558926 - L1MEf LINE L1 -4868 1332 1117 3 1025 582 277 49 0 chr12 57698784 57699027 -63558503 + L1M2 LINE L1 5408 5663 -520 3 1025 242 281 0 15 chr12 57699031 57699096 -63558434 + B4 SINE B4 85 148 -144 3 1025 1855 134 91 3 chr12 57699337 57699667 -63557863 - RLTR15 LTR ERVK 0 359 1 3 1025 3649 201 64 17 chr12 57699668 57700587 -63556943 - MYSERV16_I-int LTR ERVK -1 2325 1364 3 1025 441 222 40 46 chr12 57700597 57700748 -63556782 - Lx2B LINE L1 -5 6995 6846 3 1025 416 149 0 15 chr12 57700740 57700808 -63556722 + Lx2B LINE L1 6675 6741 -259 3 1025 4299 234 24 53 chr12 57700841 57702346 -63555184 - MYSERV16_I-int LTR ERVK -1081 1245 2 3 1025 423 273 8 60 chr12 57702458 57702575 -63554955 - B1_Mur3 SINE Alu -10 139 29 3 1025 1075 63 35 14 chr12 57702984 57703128 -63554402 - B1_Mus1 SINE Alu 0 148 2 3 1025 269 245 113 31 chr12 57703328 57703425 -63554105 + L1M5 LINE L1 5000 5104 -1042 3 1025 631 173 0 0 chr12 57703446 57703556 -63553974 + B1_Mur4 SINE Alu 5 114 -36 3 1025 278 250 29 14 chr12 57703911 57703980 -63553550 + GA-rich Low_complexity Low_complexity 3 72 0 3 1025 1155 271 48 63 chr12 57704383 57704904 -63552626 - L1MA9 LINE L1 -234 6078 5566 3 1025 948 243 5 46 chr12 57704908 57705124 -63552406 - B3 SINE B2 -9 207 1 3 1025 22 0 0 0 chr12 57705176 57705198 -63552332 + AT_rich Low_complexity Low_complexity 1 22 0 3 1025 378 42 0 0 chr12 57705200 57705248 -63552282 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1025 656 238 0 0 chr12 57705265 57705387 -63552143 - RSINE1 SINE B4 -31 134 13 3 1025 490 274 35 68 chr12 57705404 57705644 -63551886 - L1MA9 LINE L1 -686 5482 5243 3 1025 534 31 0 0 chr12 57705644 57705708 -63551822 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1025 358 286 72 64 chr12 57705708 57705783 -63551747 - L1MA9 LINE L1 -898 5242 5159 3 1025 192 104 20 59 chr12 57707600 57707651 -63549879 + GA-rich Low_complexity Low_complexity 3 51 0 3 1025 640 241 1 2 chr12 57709498 57709645 -63547885 + B4A SINE B4 123 268 -24 3 1025 423 0 0 0 chr12 57709648 57709695 -63547835 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1025 240 35 0 0 chr12 57709793 57709822 -63547708 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1025 270 116 0 0 chr12 57710189 57710232 -63547298 + (TCTCCC)n Simple_repeat Simple_repeat 3 45 0 3 1025 495 33 0 0 chr12 57710236 57710297 -63547233 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1025 249 108 0 0 chr12 57711511 57711548 -63545982 + (TCC)n Simple_repeat Simple_repeat 2 38 0 3 1025 477 0 0 0 chr12 57712504 57712557 -63544973 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1025 230 143 0 58 chr12 57714307 57714359 -63543171 + (CCCCG)n Simple_repeat Simple_repeat 1 49 0 3 1025 392 37 19 0 chr12 57714771 57714825 -63542705 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1025 979 151 8 4 chr12 57717337 57717605 -63539925 + CT-rich Low_complexity Low_complexity 1 268 0 3 1025 1177 99 46 17 chr12 57717766 57717941 -63539589 + B2_Mm2 SINE B2 2 181 -14 3 1025 224 0 65 0 chr12 57718124 57718155 -63539375 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 3 1025 249 108 0 0 chr12 57718495 57718532 -63538998 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1025 339 96 0 0 chr12 57721643 57721695 -63535835 + (TTA)n Simple_repeat Simple_repeat 1 52 0 3 1025 396 0 0 0 chr12 57723296 57723340 -63534190 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1025 189 94 0 0 chr12 57723340 57723372 -63534158 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 3 1025 2437 199 5 175 chr12 57724175 57724911 -63532619 + RMER19C LTR ERVK 1 611 0 3 1025 880 83 61 0 chr12 57725051 57725183 -63532347 + B1_Mus2 SINE Alu 7 146 -1 3 1025 602 192 35 78 chr12 57726103 57726244 -63531286 + B1_Mur1 SINE Alu 7 141 -8 3 1025 183 129 0 0 chr12 57726567 57726598 -63530932 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 3 1025 535 243 0 0 chr12 57726715 57726826 -63530704 + B1_Mur1 SINE Alu 24 134 -15 3 1025 2499 277 54 53 chr12 57726924 57727888 -63529642 - ORR1D2-int LTR MaLR -405 965 1 3 1025 1348 70 43 5 chr12 57727897 57727921 -63529609 - B2_Mm1t SINE B2 0 193 162 3 1025 315 0 0 0 chr12 57727921 57727956 -63529574 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 1025 1348 70 43 5 chr12 57727956 57728117 -63529413 - B2_Mm1t SINE B2 -32 161 2 3 1025 500 237 78 31 chr12 57728120 57728312 -63529218 - ORR1D2 LTR MaLR -3 367 167 3 1025 198 0 0 0 chr12 57728316 57728338 -63529192 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1025 549 0 0 0 chr12 57728338 57728398 -63529132 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1025 329 319 19 110 chr12 57728807 57728860 -63528670 - RSINE1 SINE B4 -22 143 99 3 1025 1558 67 0 5 chr12 57728860 57729055 -63528475 - B2_Mm2 SINE B2 0 195 2 3 1025 329 319 19 110 chr12 57729055 57729156 -63528374 - RSINE1 SINE B4 -67 98 3 3 1025 4441 18 0 2 chr12 57729534 57730028 -63527502 - MT2_Mm LTR ERVL 0 493 1 3 1025 4055 114 42 21 chr12 57730189 57730808 -63526722 - Lx LINE L1 -2 6652 6021 3 1025 189 154 0 0 chr12 57731306 57731345 -63526185 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1025 219 139 0 0 chr12 57732360 57732396 -63525134 + (CAT)n Simple_repeat Simple_repeat 3 38 0 3 1025 21 0 0 0 chr12 57733498 57733519 -63524011 + AT_rich Low_complexity Low_complexity 1 21 0 3 1025 23 54 0 0 chr12 57733536 57733573 -63523957 + AT_rich Low_complexity Low_complexity 1 37 0 3 1025 210 226 0 0 chr12 57733982 57734035 -63523495 + G-rich Low_complexity Low_complexity 1 53 0 3 1025 185 324 66 40 chr12 57734408 57734559 -63522971 + MIRc SINE MIR 38 192 -76 3 1025 27 0 0 0 chr12 57735621 57735648 -63521882 + AT_rich Low_complexity Low_complexity 1 27 0 3 1025 244 221 130 0 chr12 57735651 57735728 -63521802 - Lx8 LINE L1 -6 7467 7381 3 1025 746 315 57 38 chr12 57735721 57736146 -63521384 - Lx7 LINE L1 -371 7325 6893 3 1025 1202 66 5 52 chr12 57736296 57736327 -63521203 - B2_Mm2 SINE B2 -11 184 162 3 1025 333 0 0 0 chr12 57736327 57736364 -63521166 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 3 1025 1202 66 5 52 chr12 57736364 57736524 -63521006 - B2_Mm2 SINE B2 -34 161 2 3 1025 441 0 0 0 chr12 57736540 57736589 -63520941 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1025 456 295 8 8 chr12 57736608 57736738 -63520792 - RSINE1 SINE B4 -33 132 3 3 1025 525 16 0 0 chr12 57737330 57737392 -63520138 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1025 233 294 179 21 chr12 57739014 57739254 -63518276 - L1MA4 LINE L1 -7 6293 6016 3 1025 3296 155 63 22 chr12 57739618 57740205 -63517325 + RMER19C LTR ERVK 1 611 0 3 1025 459 309 16 0 chr12 57740675 57740798 -63516732 + B4 SINE B4 60 184 -108 3 1025 375 60 0 0 chr12 57740807 57740857 -63516673 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1025 226 24 47 47 chr12 57740881 57740924 -63516606 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 3 1025 369 244 69 25 chr12 57741438 57741598 -63515932 + Lx8 LINE L1 7303 7469 -4 3 1025 322 286 10 71 chr12 57741805 57741903 -63515627 + PB1D10 SINE Alu 10 101 -16 3 1025 834 297 38 14 chr12 57742212 57742502 -63515028 + L4 LINE RTE 726 1022 -1007 3 1025 221 366 43 21 chr12 57742682 57742869 -63514661 + L4 LINE RTE 1283 1473 -556 3 1025 240 35 0 0 chr12 57743310 57743339 -63514191 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 3 1025 1314 175 65 7 chr12 57743339 57743615 -63513915 - Lx5 LINE L1 -16 7034 6743 3 1025 204 378 30 45 chr12 57743730 57743863 -63513667 - MIRb SINE MIR -68 200 70 3 1025 302 224 15 15 chr12 57743880 57743948 -63513582 + ID4 SINE ID 2 69 -14 3 1025 477 0 0 0 chr12 57743949 57744002 -63513528 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1025 397 282 122 27 chr12 57744504 57744726 -63512804 + L1MA5 LINE L1 5867 6109 -191 3 1025 309 64 128 0 chr12 57744959 57745006 -63512524 + LTRIS5 LTR ERV1 64 116 -331 3 1025 1074 111 29 37 chr12 57745031 57745263 -63512267 + LTRIS5 LTR ERV1 217 512 0 3 1025 1128 142 200 0 chr12 57745602 57745859 -63511671 - ORR1D-int LTR MaLR 0 1370 1062 3 1025 1239 241 94 31 chr12 57745859 57746335 -63511195 + RLTR12B LTR ERVK 1 506 -22 3 1025 1157 159 12 72 chr12 57746379 57746630 -63510900 - ORR1D-int LTR MaLR -297 1073 838 3 1025 3472 190 66 45 chr12 57746630 57747484 -63510046 + RMER13B LTR ERVK 1 872 -36 3 1025 671 196 251 7 chr12 57747505 57747779 -63509751 - ORR1D1-int LTR MaLR -531 978 503 3 1025 1507 215 33 35 chr12 57747790 57748156 -63509374 - ORR1D1 LTR MaLR -4 370 6 3 1025 545 334 258 12 chr12 57748589 57748911 -63508619 + RMER15-int LTR ERVL 1987 2387 -2612 3 1025 1430 71 16 0 chr12 57748950 57749134 -63508396 + B2_Mm2 SINE B2 3 189 -6 3 1025 1120 285 65 6 chr12 57749147 57749486 -63508044 + RMER15-int LTR ERVL 4155 4513 -486 3 1025 787 221 0 47 chr12 57749513 57749703 -63507827 + ORR1D1 LTR MaLR 1 181 -193 3 1025 311 155 68 0 chr12 57749703 57749806 -63507724 + CT-rich Low_complexity Low_complexity 1 110 0 3 1025 864 188 14 52 chr12 57749808 57750021 -63507509 + ORR1D1 LTR MaLR 166 370 -4 3 1025 287 366 45 56 chr12 57750035 57750304 -63507226 + Lx8 LINE L1 6649 6914 -559 3 1025 1669 153 63 49 chr12 57750362 57750727 -63506803 + ORR1C1 LTR MaLR 1 370 -8 3 1025 279 258 0 29 chr12 57751172 57751240 -63506290 - Lx7 LINE L1 -1324 6372 6307 3 1025 457 235 101 0 chr12 57751407 57751556 -63505974 + L1MA5 LINE L1 6127 6290 -10 3 1025 654 262 20 7 chr12 57751587 57751733 -63505797 - RSINE1 SINE B4 -14 151 4 3 1025 391 182 28 92 chr12 57751748 57751857 -63505673 + Lx7 LINE L1 6088 6189 -1507 3 1025 216 163 0 0 chr12 57751865 57751908 -63505622 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1025 6107 231 126 33 chr12 57752457 57754169 -63503361 - Lx7 LINE L1 -44 7652 5781 3 1025 2665 197 28 37 chr12 57754329 57754381 -63503149 - Lx7 LINE L1 -142 5738 5688 3 1025 2181 149 8 18 chr12 57754381 57754777 -63502753 - Lx LINE L1 0 6654 6263 3 1025 2665 197 45 53 chr12 57754777 57755408 -63502122 - Lx7 LINE L1 -193 5687 4938 3 1025 3018 82 10 2 chr12 57755408 57755801 -63501729 - MTA_Mm LTR MaLR 0 396 1 3 1025 2107 165 16 158 chr12 57755801 57756017 -63501513 - Lx7 LINE L1 -942 4938 4761 3 1025 384 273 243 24 chr12 57756017 57756227 -63501303 - L1MD LINE L1 -1847 4299 4044 4 1025 3384 150 22 14 chr12 57756228 57756817 -63500713 + RMER13B LTR ERVK 1 594 -314 4 1025 454 204 65 72 chr12 57756803 57756956 -63500574 + RMER13B LTR ERVK 757 908 0 4 1025 312 202 1 72 chr12 57756998 57757114 -63500416 - L1M4 LINE L1 -2141 4005 3891 4 1025 3899 191 26 14 chr12 57757114 57757930 -63499600 - Lx2B LINE L1 -492 6508 5683 4 1025 356 278 97 11 chr12 57757923 57758098 -63499432 - L1M4 LINE L1 -2369 3777 3588 4 1025 1979 156 11 19 chr12 57758361 57758721 -63498809 - RLTR15 LTR ERVK -2 357 1 4 1025 971 159 54 11 chr12 57758986 57759170 -63498360 + B2_Mm2 SINE B2 3 194 -1 4 1025 196 53 26 26 chr12 57759286 57759325 -63498205 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1025 2920 200 112 31 chr12 57759327 57760074 -63497456 + Lx9 LINE L1 6837 7644 0 4 1025 8845 123 39 18 chr12 57760667 57762346 -63495184 - Lx2B LINE L1 -2 6998 5292 4 1025 1405 66 55 0 chr12 57762391 57762572 -63494958 + B2_Mm1a SINE B2 1 191 -2 4 1025 583 195 233 28 chr12 57762666 57762871 -63494659 - RMER21B LTR ERV1 -289 553 296 4 1025 180 0 0 0 chr12 57762871 57762891 -63494639 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1025 583 195 233 28 chr12 57762891 57762938 -63494592 - RMER21B LTR ERV1 -547 295 250 4 1025 261 338 0 0 chr12 57763063 57763143 -63494387 - ID4_ SINE ID -2 81 2 4 1025 305 364 8 0 chr12 57763190 57763319 -63494211 - LTR33 LTR ERVL -348 167 38 4 1025 272 282 28 28 chr12 57764431 57764537 -63492993 - Charlie8 DNA MER1_type -2220 208 103 4 1025 3232 150 52 44 chr12 57764925 57765537 -63491993 + Lx4B LINE L1 6174 6790 -268 4 1025 439 301 0 0 chr12 57766148 57766251 -63491279 - B3A SINE B2 -95 103 1 4 1025 233 271 33 66 chr12 57766251 57766313 -63491217 - B4 SINE B4 -97 195 137 4 1025 427 196 0 14 chr12 57766315 57766455 -63491075 + (CA)n Simple_repeat Simple_repeat 1 138 0 4 1025 234 0 0 0 chr12 57766508 57766534 -63490996 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1025 576 243 7 67 chr12 57766534 57766684 -63490846 - RSINE1 SINE B4 -24 141 1 4 1025 345 247 37 0 chr12 57766731 57766812 -63490718 - B4 SINE B4 -206 86 3 4 1025 6419 50 0 37 chr12 57766873 57767704 -63489826 + L1Md_F2 LINE L1 5775 6574 -8 4 1025 822 178 20 0 chr12 57769329 57769475 -63488055 + B1_Mur4 SINE Alu 1 149 -1 4 1025 715 133 18 0 chr12 57769620 57769733 -63487797 + B1_Mur2 SINE Alu 28 142 -7 4 1025 234 0 0 0 chr12 57769741 57769767 -63487763 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 4 1025 288 120 0 0 chr12 57770245 57770295 -63487235 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 4 1025 414 257 19 0 chr12 57770295 57770400 -63487130 - PB1D10 SINE Alu -1 116 10 4 1025 180 0 0 0 chr12 57770720 57770740 -63486790 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 1025 22 0 0 0 chr12 57771998 57772020 -63485510 + AT_rich Low_complexity Low_complexity 1 22 0 4 1025 369 0 0 0 chr12 57772432 57772473 -63485057 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1025 23 0 0 0 chr12 57772601 57772624 -63484906 + AT_rich Low_complexity Low_complexity 1 23 0 4 1025 198 239 51 40 chr12 57773460 57773542 -63483988 - L2a LINE L2 -3 3423 3284 4 1025 41 48 0 0 chr12 57774693 57774755 -63482775 + AT_rich Low_complexity Low_complexity 1 62 0 4 1025 932 230 34 0 chr12 57775852 57776056 -63481474 - B3 SINE B2 -5 211 1 4 1025 606 63 0 0 chr12 57776699 57776778 -63480752 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 1025 799 179 0 0 chr12 57777250 57777390 -63480140 - B1_Mus1 SINE Alu -1 147 8 4 1025 498 223 0 43 chr12 57777624 57777741 -63479789 - PB1D9 SINE Alu -8 112 1 4 1025 225 261 73 83 chr12 57777853 57777949 -63479581 - B1F2 SINE Alu -52 95 1 4 1025 1021 234 5 0 chr12 57778127 57778336 -63479194 - B3 SINE B2 -6 210 1 4 1025 210 295 16 0 chr12 57779099 57779160 -63478370 + CT-rich Low_complexity Low_complexity 2 63 0 4 1025 777 190 79 17 chr12 57779185 57779362 -63478168 - B3 SINE B2 -16 200 13 4 1025 663 202 20 44 chr12 57779370 57779623 -63477907 - RMER10A LTR ERVL -6 436 1 4 1025 624 281 0 0 chr12 57779623 57779760 -63477770 - RSINE1 SINE B4 -27 138 2 4 1025 189 333 0 16 chr12 57779813 57779877 -63477653 + L2b LINE L2 3291 3353 -22 4 1025 270 0 0 0 chr12 57780432 57780462 -63477068 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 4 1025 3990 172 22 31 chr12 57780476 57781213 -63476317 + Lx5 LINE L1 6268 6997 -53 4 1025 1012 116 28 28 chr12 57781232 57781410 -63476120 - B2_Mm2 SINE B2 -16 179 2 4 1025 578 14 14 0 chr12 57781846 57781917 -63475613 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1025 486 0 0 0 chr12 57782939 57782993 -63474537 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1025 474 222 0 0 chr12 57785211 57785378 -63472152 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 1025 330 293 0 0 chr12 57785583 57785665 -63471865 + ID4 SINE ID 1 82 -1 4 1025 190 51 77 0 chr12 57787609 57787648 -63469882 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 1025 218 125 0 35 chr12 57788369 57788427 -63469103 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 4 1025 338 253 0 0 chr12 57788651 57788726 -63468804 + BC1_Mm scRNA scRNA 17 91 -61 4 1025 416 82 27 0 chr12 57791978 57792051 -63465479 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 4 1025 740 11 0 11 chr12 57793190 57793280 -63464250 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 4 1025 450 0 0 0 chr12 57798767 57798817 -63458713 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1025 193 89 44 0 chr12 57802425 57802470 -63455060 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1026 234 0 0 0 chr12 57804741 57804767 -63452763 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1026 351 276 78 8 chr12 57804793 57804921 -63452609 + L1MA6 LINE L1 6123 6259 -41 4 1026 207 139 0 0 chr12 57805525 57805561 -63451969 + (TTC)n Simple_repeat Simple_repeat 1 36 0 4 1026 28 0 0 0 chr12 57806878 57806906 -63450624 + GC_rich Low_complexity Low_complexity 1 28 0 4 1026 234 172 29 72 chr12 57808300 57808369 -63449161 + B1F SINE Alu 84 149 0 4 1026 546 0 136 0 chr12 57808412 57808566 -63448964 + (CAGG)n Simple_repeat Simple_repeat 2 176 0 4 1026 483 115 13 13 chr12 57808588 57808667 -63448863 + B1_Mur2 SINE Alu 40 118 -31 4 1026 513 0 0 0 chr12 57808774 57808831 -63448699 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1026 858 164 14 7 chr12 57808844 57808991 -63448539 - B1_Mur4 SINE Alu 0 150 3 4 1026 210 105 0 0 chr12 57809855 57809893 -63447637 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1026 203 133 0 0 chr12 57811929 57811959 -63445571 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 4 1026 1123 68 7 13 chr12 57812547 57812696 -63444834 - B1_Mus1 SINE Alu 0 148 1 4 1026 432 0 0 0 chr12 57813916 57813964 -63443566 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1026 22 0 0 0 chr12 57814597 57814619 -63442911 + AT_rich Low_complexity Low_complexity 1 22 0 4 1026 180 111 0 0 chr12 57816079 57816106 -63441424 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1026 265 109 0 30 chr12 57816127 57816193 -63441337 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1026 603 74 0 0 chr12 57816199 57816280 -63441250 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 4 1026 293 240 30 30 chr12 57816416 57816515 -63441015 + CT-rich Low_complexity Low_complexity 3 101 0 4 1026 202 259 0 0 chr12 57819402 57819460 -63438070 + (CCCG)n Simple_repeat Simple_repeat 1 58 0 4 1026 506 227 0 8 chr12 57820067 57820200 -63437330 + GA-rich Low_complexity Low_complexity 4 135 0 4 1026 424 325 52 7 chr12 57821250 57821405 -63436125 - RSINE1 SINE B4 -2 163 2 4 1026 346 287 14 79 chr12 57821899 57822039 -63435491 + RSINE1 SINE B4 16 146 -19 4 1026 414 0 0 0 chr12 57822041 57822087 -63435443 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1026 257 305 12 0 chr12 57822667 57822749 -63434781 + GA-rich Low_complexity Low_complexity 4 86 0 4 1026 2849 52 11 0 chr12 57823242 57823590 -63433940 + L1_Mus1 LINE L1 6216 6567 0 4 1026 351 203 0 0 chr12 57823629 57823693 -63433837 - B1_Mus1 SINE Alu -83 65 2 4 1026 183 215 227 15 chr12 57824292 57824358 -63433172 - MIRb SINE MIR -27 241 162 4 1026 491 144 0 10 chr12 57824784 57824882 -63432648 + GA-rich Low_complexity Low_complexity 5 101 0 4 1026 280 295 0 13 chr12 57825034 57825113 -63432417 + T-rich Low_complexity Low_complexity 4 81 0 4 1026 237 108 0 0 chr12 57825150 57825187 -63432343 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 4 1026 768 186 13 40 chr12 57825187 57825338 -63432192 - B1_Mus1 SINE Alu 0 148 2 4 1026 333 0 0 0 chr12 57825720 57825757 -63431773 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1026 216 111 0 0 chr12 57825835 57825871 -63431659 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1026 1185 48 0 13 chr12 57825871 57826020 -63431510 - B1_Mus2 SINE Alu 0 147 1 4 1026 1943 273 119 78 chr12 57826308 57827215 -63430315 + Lx8 LINE L1 6396 7339 -134 4 1026 1749 242 74 57 chr12 57827226 57827878 -63429652 + Lx9 LINE L1 6979 7641 -3 4 1026 202 345 25 16 chr12 57829983 57830104 -63427426 + L2a LINE L2 3211 3332 -94 4 1026 861 68 44 22 chr12 57831725 57831847 -63425683 + B1_Mm SINE Alu 10 136 -11 4 1026 255 31 0 0 chr12 57831847 57831879 -63425651 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1026 861 68 44 22 chr12 57831879 57831891 -63425639 + B1_Mm SINE Alu 137 147 0 4 1026 513 231 81 7 chr12 57832065 57832213 -63425317 - B3A SINE B2 -37 161 3 4 1026 26 50 0 0 chr12 57832672 57832712 -63424818 + AT_rich Low_complexity Low_complexity 1 40 0 4 1026 378 0 0 0 chr12 57832825 57832867 -63424663 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1026 365 359 36 6 chr12 57833477 57833645 -63423885 - MIRc SINE MIR -14 254 82 5 1026 27 29 0 0 chr12 57834192 57834226 -63423304 + AT_rich Low_complexity Low_complexity 1 34 0 5 1026 438 302 0 8 chr12 57834643 57834770 -63422760 - Lx7 LINE L1 -546 7150 7025 5 1026 283 211 28 14 chr12 57835024 57835096 -63422434 + MLT1A1 LTR MaLR 336 408 0 5 1026 201 340 99 53 chr12 57835226 57835378 -63422152 + L2b LINE L2 3012 3170 -205 5 1026 591 210 113 0 chr12 57835833 57835957 -63421573 - B1F SINE Alu -10 139 2 5 1026 257 263 0 158 chr12 57836112 57836207 -63421323 + PB1D10 SINE Alu 38 117 0 5 1026 2273 102 136 3 chr12 57836214 57836568 -63420962 + Lx LINE L1 6247 6647 -7 5 1026 697 206 247 0 chr12 57836630 57836800 -63420730 - B3 SINE B2 -3 213 2 5 1026 270 0 0 0 chr12 57836959 57836989 -63420541 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1026 424 281 8 32 chr12 57837451 57837576 -63419954 - L2a LINE L2 -4 3422 3301 5 1026 432 0 0 0 chr12 57838110 57838158 -63419372 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 5 1026 331 314 0 29 chr12 57838265 57838370 -63419160 - PB1D10 SINE Alu -4 113 12 5 1026 192 97 0 0 chr12 57839076 57839107 -63418423 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 5 1026 951 190 64 35 chr12 57841213 57841282 -63416248 - B3 SINE B2 -3 213 147 5 1026 225 0 0 0 chr12 57841282 57841307 -63416223 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1026 426 20 0 0 chr12 57841307 57841357 -63416173 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1026 951 190 64 35 chr12 57841357 57841488 -63416042 - B3 SINE B2 -70 146 7 5 1026 251 28 28 0 chr12 57841498 57841534 -63415996 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 5 1026 609 228 0 0 chr12 57841546 57841647 -63415883 - B1_Mur2 SINE Alu -46 103 3 5 1026 1525 119 17 0 chr12 57841732 57841968 -63415562 + Lx5 LINE L1 5724 5963 -1087 5 1026 4239 168 61 21 chr12 57841968 57842691 -63414839 + Lx5 LINE L1 6299 7050 0 5 1026 248 321 96 42 chr12 57843048 57843214 -63414316 + MIR SINE MIR 3 177 -85 5 1026 249 254 34 0 chr12 57843355 57843414 -63414116 + B3 SINE B2 19 79 -137 5 1026 2639 127 5 0 chr12 57843736 57844146 -63413384 - Lx4B LINE L1 -1371 4506 4095 5 1026 7726 137 15 84 chr12 57844138 57844178 -63413352 + Lx4B LINE L1 4509 4548 -1329 5 1026 2489 103 22 0 chr12 57844178 57844498 -63413032 - ORR1A2 LTR MaLR 0 327 1 5 1026 7726 137 15 84 chr12 57844498 57845249 -63412281 + Lx4B LINE L1 4549 5306 -571 5 1026 1074 117 0 55 chr12 57845249 57845430 -63412100 - L1Md_F2 LINE L1 0 6582 6412 5 1026 2403 39 11 4 chr12 57845436 57845717 -63411813 - L1Md_F3 LINE L1 -2 6582 6300 5 1026 7726 150 34 45 chr12 57845717 57847530 -63410000 + Lx4B LINE L1 5307 7058 0 5 1026 369 0 0 0 chr12 57848002 57848043 -63409487 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1026 3019 27 0 6 chr12 57848841 57849180 -63408350 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1026 9433 30 2 5 chr12 57849180 57850265 -63407265 - IAPEz-int LTR ERVK 0 6481 5400 5 1026 21012 36 47 15 chr12 57850240 57852823 -63404707 - IAPEz-int LTR ERVK -3807 2674 8 5 1026 3019 27 0 6 chr12 57852823 57853162 -63404368 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1026 1047 67 7 0 chr12 57853162 57853297 -63404233 + B1_Mus1 SINE Alu 13 148 0 5 1026 298 308 29 9 chr12 57853419 57853524 -63404006 - Lx8 LINE L1 -220 7253 7147 5 1026 248 276 52 96 chr12 57853523 57853659 -63403871 + L1MA9 LINE L1 5922 6051 -261 5 1026 487 286 91 24 chr12 57853804 57853969 -63403561 - B3A SINE B2 -1 215 40 5 1026 21 36 0 0 chr12 57854052 57854080 -63403450 + AT_rich Low_complexity Low_complexity 1 28 0 5 1026 397 316 51 26 chr12 57854127 57854283 -63403247 - AmnSINE1 SINE SINE -378 197 38 5 1026 946 225 58 24 chr12 57854924 57855129 -63402401 - B3 SINE B2 0 216 5 5 1026 1110 87 30 3 chr12 57856283 57856658 -63400872 + (CATA)n Simple_repeat Simple_repeat 1 385 0 5 1026 257 340 229 0 chr12 57858003 57858147 -63399383 + MER115 DNA Tip100 8 184 -509 5 1026 1455 235 12 12 chr12 57858882 57859226 -63398304 - L1MA8 LINE L1 -292 5999 5656 5 1026 275 71 24 0 chr12 57859226 57859268 -63398262 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1026 518 177 27 309 chr12 57859268 57859333 -63398197 - B1_Mur1 SINE Alu -14 135 82 5 1026 198 71 0 0 chr12 57859333 57859361 -63398169 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 5 1026 518 177 27 309 chr12 57859361 57859483 -63398047 - B1_Mur1 SINE Alu -68 81 1 5 1026 402 262 118 0 chr12 57859549 57859768 -63397762 + L1MA6 LINE L1 6035 6290 -1 5 1026 180 0 0 0 chr12 57860323 57860343 -63397187 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1026 1078 175 226 55 chr12 57861150 57861477 -63396053 + ORR1C2 LTR MaLR 1 383 -1 5 1026 495 282 186 4 chr12 57861563 57861805 -63395725 - B4A SINE B4 -4 288 3 5 1026 597 285 58 0 chr12 57861808 57861980 -63395550 + L1MC1 LINE L1 6049 6230 -103 5 1026 423 183 114 38 chr12 57862063 57862194 -63395336 + MER33 DNA MER1_type 184 324 0 5 1026 2539 141 12 49 chr12 57862319 57862728 -63394802 - ORR1B1 LTR MaLR 0 394 1 5 1026 23 33 0 0 chr12 57862748 57862778 -63394752 + AT_rich Low_complexity Low_complexity 1 30 0 5 1026 312 330 9 0 chr12 57862807 57862919 -63394611 - Lx6 LINE L1 -81 7379 7267 5 1026 1020 263 36 67 chr12 57862919 57863434 -63394096 - L1MA5A LINE L1 -301 5996 5460 5 1026 265 278 73 18 chr12 57863430 57863540 -63393990 + L1_Mur2 LINE L1 4696 4811 -1066 5 1026 288 256 25 37 chr12 57863584 57863665 -63393865 + B3 SINE B2 134 213 -3 5 1026 4856 43 0 16 chr12 57863673 57864245 -63393285 + L1Md_F2 LINE L1 6019 6581 -1 5 1026 466 266 47 72 chr12 57864274 57864553 -63392977 + L1_Rod LINE L1 4953 5224 -623 5 1026 1495 266 179 4 chr12 57864637 57865151 -63392379 + Lx8 LINE L1 6607 7210 -263 5 1026 188 79 0 50 chr12 57865892 57865932 -63391598 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 5 1026 267 103 0 0 chr12 57866196 57866235 -63391295 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1026 246 250 47 0 chr12 57867646 57867710 -63389820 - ID4 SINE ID -13 70 4 5 1026 672 179 8 8 chr12 57867892 57868010 -63389520 + B1_Mur2 SINE Alu 27 144 -5 5 1026 324 83 0 0 chr12 57868123 57868171 -63389359 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1026 459 0 0 0 chr12 57868171 57868221 -63389309 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1026 288 0 0 0 chr12 57868326 57868358 -63389172 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 5 1026 443 229 35 95 chr12 57868365 57868481 -63389049 - PB1D10 SINE Alu -7 110 2 5 1026 227 95 48 0 chr12 57869588 57869630 -63387900 + (CATA)n Simple_repeat Simple_repeat 1 44 0 5 1026 766 224 7 26 chr12 57869630 57869781 -63387749 - B1_Mur2 SINE Alu -1 148 1 5 1026 423 372 101 44 chr12 57870022 57870250 -63387280 + Tigger5 DNA MER2_type 4 244 -2162 5 1026 216 0 0 0 chr12 57872514 57872538 -63384992 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1026 1171 123 102 10 chr12 57872601 57872798 -63384732 - URR1B DNA MER1_type -10 215 1 5 1026 285 231 49 49 chr12 57872809 57872891 -63384639 + ID4_ SINE ID 2 83 0 5 1026 800 289 137 38 chr12 57873382 57873929 -63383601 - L1MEc LINE L1 -5765 635 35 5 1026 188 273 50 38 chr12 57876755 57876835 -63380695 - MIRc SINE MIR -85 183 103 5 1026 27 49 0 0 chr12 57876990 57877031 -63380499 + AT_rich Low_complexity Low_complexity 1 41 0 5 1026 3560 48 0 0 chr12 57877264 57877664 -63379866 + MTB LTR MaLR 1 400 0 5 1026 282 180 0 0 chr12 57878749 57878810 -63378720 + GA-rich Low_complexity Low_complexity 3 63 0 5 1026 215 313 14 43 chr12 57879436 57879506 -63378024 - B3 SINE B2 -147 69 2 5 1026 2413 153 39 8 chr12 57879562 57879944 -63377586 + ORR1B1 LTR MaLR 1 394 0 5 1026 560 158 253 27 chr12 57881243 57881393 -63376137 + B4 SINE B4 41 224 -68 5 1026 495 265 137 151 chr12 57881449 57881668 -63375862 + ID_B1 SINE B4 28 243 -49 5 1026 324 0 0 0 chr12 57881701 57881737 -63375793 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1026 756 61 0 0 chr12 57881737 57881834 -63375696 + (GA)n Simple_repeat Simple_repeat 2 99 0 5 1026 1385 198 122 9 chr12 57882822 57883143 -63374387 - Lx2B LINE L1 -10 6990 6634 5 1026 342 0 0 0 chr12 57883342 57883380 -63374150 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 5 1026 180 0 0 0 chr12 57883429 57883449 -63374081 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1026 1621 218 135 44 chr12 57883496 57884148 -63373382 - Lx7 LINE L1 0 7696 6869 5 1026 191 203 17 0 chr12 57885238 57885297 -63372233 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1026 354 324 64 43 chr12 57886762 57886949 -63370581 + L2a LINE L2 2380 2570 -849 5 1026 4202 41 0 0 chr12 57887125 57887802 -63369728 - L1Md_F2 LINE L1 -494 6088 5412 5 1026 3859 57 12 15 chr12 57887802 57888281 -63369249 + L1Md_F2 LINE L1 6102 6579 -3 5 1026 753 320 69 25 chr12 57888519 57888952 -63368578 + L2a LINE L2 2970 3421 -5 5 1026 212 250 0 143 chr12 57888973 57889057 -63368473 + B1_Mur1 SINE Alu 52 123 -26 5 1026 2444 59 0 0 chr12 57889576 57889929 -63367601 - L1Md_T LINE L1 0 6582 6293 5 1026 1073 59 73 0 chr12 57889931 57890067 -63367463 - B1_Mus2 SINE Alu 0 147 2 5 1026 578 310 28 17 chr12 57891825 57892002 -63365528 - B3A SINE B2 -16 182 4 5 1026 1138 269 103 6 chr12 57892196 57892616 -63364914 + L1MB3 LINE L1 5692 6176 -7 5 1026 974 260 85 25 chr12 57893004 57893323 -63364207 + ORR1E LTR MaLR 1 338 -21 5 1026 318 50 0 0 chr12 57894079 57894119 -63363411 + (TTCTC)n Simple_repeat Simple_repeat 1 40 0 5 1026 1284 89 0 0 chr12 57894122 57894302 -63363228 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1026 612 0 0 0 chr12 57894302 57894370 -63363160 + (TCCCC)n Simple_repeat Simple_repeat 5 72 0 5 1026 601 66 11 11 chr12 57894368 57894460 -63363070 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 5 1026 674 249 14 77 chr12 57895222 57895431 -63362099 - B3A SINE B2 0 198 3 5 1026 375 23 0 0 chr12 57895445 57895489 -63362041 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1026 279 0 0 0 chr12 57895523 57895554 -63361976 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1026 302 232 0 0 chr12 57897615 57897671 -63359859 + polypurine Low_complexity Low_complexity 1 56 0 6 1026 933 109 0 0 chr12 57897673 57897810 -63359720 + (GGAA)n Simple_repeat Simple_repeat 3 139 0 6 1026 2470 169 40 5 chr12 57897810 57898215 -63359315 + MTC LTR MaLR 3 421 0 6 1026 933 109 0 0 chr12 57898215 57898224 -63359306 + (GGAA)n Simple_repeat Simple_repeat 4 12 0 6 1026 468 35 0 0 chr12 57899432 57899490 -63358040 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 6 1026 21 36 0 0 chr12 57900577 57900605 -63356925 + AT_rich Low_complexity Low_complexity 1 28 0 6 1026 491 307 48 113 chr12 57901151 57901504 -63356026 + ORR1E LTR MaLR 26 355 -4 6 1026 374 284 106 84 chr12 57901514 57901741 -63355789 + MIRb SINE MIR 33 264 -4 6 1026 414 0 0 0 chr12 57902174 57902220 -63355310 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1026 977 215 5 30 chr12 57902343 57902544 -63354986 + B3 SINE B2 1 196 -20 6 1026 570 29 0 0 chr12 57903050 57903118 -63354412 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1026 531 118 47 0 chr12 57903118 57903245 -63354285 + (CAGAGA)n Simple_repeat Simple_repeat 3 135 0 6 1026 355 330 96 102 chr12 57903570 57904039 -63353491 + MLT1G1 LTR MaLR 112 577 -2 6 1026 567 0 0 0 chr12 57904081 57904144 -63353386 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 6 1026 231 247 42 89 chr12 57904153 57904344 -63353186 + MER112 DNA MER1_type 77 258 -3 6 1026 603 0 0 0 chr12 57906086 57906153 -63351377 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 1026 23 0 0 0 chr12 57906267 57906290 -63351240 + AT_rich Low_complexity Low_complexity 1 23 0 6 1026 210 37 0 0 chr12 57907095 57907122 -63350408 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1026 815 133 59 0 chr12 57907915 57908050 -63349480 + B1_Mur3 SINE Alu 7 149 0 6 1026 216 0 0 0 chr12 57908836 57908860 -63348670 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1026 1284 48 0 0 chr12 57908864 57909010 -63348520 - B1_Mus2 SINE Alu 0 147 2 6 1026 248 257 181 16 chr12 57909055 57909237 -63348293 - Charlie18a DNA MER1_type -33 309 98 6 1026 599 265 92 22 chr12 57909926 57910111 -63347419 - Tigger12c DNA MER2_type -536 198 1 6 1026 38 61 0 0 chr12 57910816 57910882 -63346648 + AT_rich Low_complexity Low_complexity 1 66 0 6 1026 25 65 0 0 chr12 57910933 57910979 -63346551 + AT_rich Low_complexity Low_complexity 1 46 0 6 1026 240 35 0 0 chr12 57912769 57912798 -63344732 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1026 1288 259 69 23 chr12 57912895 57913243 -63344287 + ORR1D2 LTR MaLR 1 364 -6 6 1026 3718 43 7 2 chr12 57913272 57913712 -63343818 + L1Md_F2 LINE L1 6138 6579 -3 6 1026 1971 304 101 38 chr12 57914552 57915858 -63341672 - L1_Rod LINE L1 -1 5846 4459 6 1026 252 297 87 80 chr12 57916051 57916201 -63341329 + L2c LINE L2 1446 1596 -1823 6 1026 279 287 15 98 chr12 57916344 57916490 -63341040 + MLT1C LTR MaLR 13 156 -349 6 1026 215 298 160 0 chr12 57916685 57916779 -63340751 + L2c LINE L2 3033 3141 -246 6 1026 194 0 0 37 chr12 57917096 57917123 -63340407 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 6 1026 844 185 14 14 chr12 57917156 57917304 -63340226 + B1_Mus1 SINE Alu 1 148 0 6 1026 240 86 0 0 chr12 57917539 57917574 -63339956 + (GGA)n Simple_repeat Simple_repeat 1 35 0 6 1026 463 336 42 50 chr12 57918618 57918856 -63338674 + ORR1E LTR MaLR 1 236 -123 6 1026 845 302 116 24 chr12 57918954 57919334 -63338196 - L1MA9 LINE L1 -82 6230 5816 6 1026 1558 143 51 8 chr12 57919381 57919635 -63337895 + MTC LTR MaLR 149 413 -8 6 1026 392 233 194 40 chr12 57919643 57919844 -63337686 - L1M3c LINE L1 -4939 1202 971 6 1026 938 329 82 82 chr12 57919938 57920630 -63336900 - L1M3c LINE L1 -5334 807 116 6 1026 3618 256 79 16 chr12 57920936 57922291 -63335239 - RMER1A Other Other -3 1027 48 6 1026 432 0 0 0 chr12 57922392 57922440 -63335090 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1026 667 216 222 0 chr12 57923613 57923789 -63333741 + MIRb SINE MIR 7 221 -47 6 1026 216 0 0 0 chr12 57924523 57924547 -63332983 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1026 21 0 0 0 chr12 57926611 57926632 -63330898 + AT_rich Low_complexity Low_complexity 1 21 0 6 1026 568 118 10 10 chr12 57926830 57926853 -63330677 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 6 1026 1338 73 0 0 chr12 57926853 57927032 -63330498 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 6 1026 568 118 10 10 chr12 57927032 57927111 -63330419 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 6 1026 230 0 33 0 chr12 57928604 57928634 -63328896 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1026 333 0 0 0 chr12 57928779 57928816 -63328714 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1026 280 265 103 29 chr12 57929161 57929297 -63328233 + L1ME3A LINE L1 5987 6132 -41 6 1026 225 318 45 45 chr12 57930185 57930274 -63327256 + RSINE1 SINE B4 8 96 -69 6 1026 207 0 0 0 chr12 57930896 57930919 -63326611 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1026 369 0 0 0 chr12 57931102 57931143 -63326387 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1026 23 0 0 0 chr12 57931798 57931821 -63325709 + AT_rich Low_complexity Low_complexity 1 23 0 6 1026 967 9 0 0 chr12 57932694 57932802 -63324728 - L1Md_F2 LINE L1 -502 6080 5973 6 1026 3745 74 21 6 chr12 57932804 57933281 -63324249 + L1Md_F2 LINE L1 6093 6576 -6 6 1027 459 0 0 0 chr12 57933997 57934048 -63323482 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1027 306 50 0 0 chr12 57935518 57935558 -63321972 + (TTG)n Simple_repeat Simple_repeat 1 40 0 6 1027 609 14 0 0 chr12 57935874 57935944 -63321586 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 6 1027 395 347 84 5 chr12 57936716 57936930 -63320600 + MIR SINE MIR 31 261 -1 6 1027 27 29 0 0 chr12 57937267 57937301 -63320229 + AT_rich Low_complexity Low_complexity 1 34 0 6 1027 1157 271 57 65 chr12 57937306 57937890 -63319640 + L1MB3 LINE L1 5597 6175 -8 6 1027 1018 293 32 3 chr12 57937918 57938202 -63319328 + B4 SINE B4 1 292 0 6 1027 423 38 0 0 chr12 57938210 57938263 -63319267 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1027 339 113 0 0 chr12 57938266 57938328 -63319202 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1027 878 50 17 0 chr12 57938670 57938789 -63318741 + (TTTC)n Simple_repeat Simple_repeat 4 124 0 6 1027 7894 72 7 8 chr12 57938806 57940314 -63317216 - L1_Mus2 LINE L1 -2 6564 5055 6 1027 866 181 21 0 chr12 57940488 57940632 -63316898 - B1_Mus1 SINE Alu 0 148 2 6 1027 22 0 0 0 chr12 57940706 57940728 -63316802 + AT_rich Low_complexity Low_complexity 1 22 0 6 1027 498 268 9 18 chr12 57940728 57940842 -63316688 - RSINE1 SINE B4 -22 143 31 6 1027 775 188 31 6 chr12 57941125 57941286 -63316244 - RMER5 LTR ERV1 -26 508 344 6 1027 876 324 24 24 chr12 57941649 57942025 -63315505 + Lx8 LINE L1 6458 6833 -640 6 1027 537 16 0 0 chr12 57942025 57942087 -63315443 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1027 907 150 0 25 chr12 57942159 57942316 -63315214 - L1Md_F3 LINE L1 -2 6582 6430 6 1027 844 66 0 0 chr12 57942326 57942432 -63315098 + L1_Mus1 LINE L1 6328 6433 -134 6 1027 1278 306 107 27 chr12 57942428 57943025 -63314505 + Lx8 LINE L1 6827 7471 -2 6 1027 1032 339 108 50 chr12 57943243 57943772 -63313758 - MLT1F2 LTR MaLR -13 667 1 6 1027 1337 241 67 40 chr12 57943793 57944195 -63313335 + Lx8 LINE L1 6714 7126 -347 6 1027 22 0 0 0 chr12 57944778 57944800 -63312730 + AT_rich Low_complexity Low_complexity 1 22 0 6 1027 2306 78 72 0 chr12 57946696 57947027 -63310503 + IAPEY2_LTR LTR ERVK 1 355 -2 6 1027 2287 148 51 44 chr12 57947515 57947925 -63309605 + MTC LTR MaLR 1 413 -8 6 1027 254 306 42 56 chr12 57947932 57948074 -63309456 + MER2 DNA MER2_type 87 226 -119 6 1027 12858 88 46 21 chr12 57948074 57948968 -63308562 + L1VL2 LINE L1 196 1110 -2505 6 1027 230 0 33 0 chr12 57948968 57948998 -63308532 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1027 12858 88 21 8 chr12 57948998 57950704 -63306826 + L1VL2 LINE L1 1111 2830 -785 6 1027 230 0 33 0 chr12 57950704 57950734 -63306796 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1027 12858 88 21 8 chr12 57950734 57950881 -63306649 + L1VL2 LINE L1 2831 2987 -628 6 1027 36 62 0 0 chr12 57951425 57951489 -63306041 + AT_rich Low_complexity Low_complexity 1 64 0 6 1027 459 0 0 0 chr12 57953995 57954046 -63303484 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1027 23 33 0 0 chr12 57954728 57954758 -63302772 + AT_rich Low_complexity Low_complexity 1 30 0 6 1027 629 279 0 67 chr12 57956979 57957129 -63300401 + RSINE1 SINE B4 26 165 0 6 1027 1046 254 130 22 chr12 57957131 57957546 -63299984 + L1_Rod LINE L1 5380 5839 -8 6 1027 1254 40 0 0 chr12 57957547 57957695 -63299835 + B1_Mus1 SINE Alu 1 148 0 6 1027 231 60 39 20 chr12 57957699 57957750 -63299780 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1027 348 24 0 0 chr12 57957750 57957791 -63299739 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1027 649 261 84 39 chr12 57957827 57958357 -63299173 - L1_Mur3 LINE L1 -4454 1426 866 6 1027 1284 7 0 0 chr12 57960050 57960136 -63297394 + (TTC)n Simple_repeat Simple_repeat 1 86 0 6 1027 1418 39 0 11 chr12 57960136 57960318 -63297212 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1027 1284 7 0 0 chr12 57960318 57960378 -63297152 + (TTC)n Simple_repeat Simple_repeat 1 60 0 6 1027 997 290 32 11 chr12 57960972 57961251 -63296279 + B4 SINE B4 2 286 -6 6 1027 200 357 0 0 chr12 57961261 57961331 -63296199 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1027 530 281 72 0 chr12 57964461 57964614 -63292916 - RSINE1 SINE B4 0 165 2 6 1027 423 0 0 0 chr12 57967674 57967721 -63289809 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1027 1237 201 86 35 chr12 57968552 57968923 -63288607 - RMER6B LTR ERVK -2 459 70 6 1027 373 176 15 0 chr12 57968931 57968999 -63288531 - RMER6B LTR ERVK -329 132 64 7 1027 25 0 0 0 chr12 57968999 57969024 -63288506 + AT_rich Low_complexity Low_complexity 1 25 0 7 1027 273 286 0 13 chr12 57969764 57969842 -63287688 + C-rich Low_complexity Low_complexity 5 81 0 7 1027 450 298 9 9 chr12 57970865 57970980 -63286550 - PB1D10 SINE Alu -2 115 1 7 1027 359 277 111 164 chr12 57972135 57972360 -63285170 - MTE2a LTR MaLR -157 222 10 7 1027 610 378 135 50 chr12 57972357 57973263 -63284267 - MLT1J-int LTR MaLR -25 1362 380 7 1027 626 310 21 52 chr12 57973429 57973715 -63283815 + B4A SINE B4 2 278 -14 7 1027 225 0 0 0 chr12 57973822 57973847 -63283683 + (TAA)n Simple_repeat Simple_repeat 2 26 0 7 1027 3382 28 5 0 chr12 57974562 57974956 -63282574 + MTA_Mm LTR MaLR 1 396 0 7 1027 245 360 130 26 chr12 57975009 57975163 -63282367 + MLT1J2 LTR MaLR 249 418 -30 7 1027 292 349 9 28 chr12 57975395 57975504 -63282026 + LTR33A_ LTR ERVL 97 203 -328 7 1027 1093 128 39 0 chr12 57975852 57976031 -63281499 + URR1A DNA MER1_type 40 225 -1 7 1027 292 264 66 8 chr12 57976602 57976724 -63280806 + Charlie5 DNA MER1_type 64 192 -2432 7 1027 269 208 13 0 chr12 57976856 57976933 -63280597 + (TA)n Simple_repeat Simple_repeat 2 79 0 7 1027 22 35 0 0 chr12 57979338 57979367 -63278163 + AT_rich Low_complexity Low_complexity 1 29 0 7 1027 967 205 30 10 chr12 57979370 57979567 -63277963 - B3 SINE B2 -14 202 2 7 1027 351 96 0 0 chr12 57980121 57980173 -63277357 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1027 1006 61 99 0 chr12 57981490 57981621 -63275909 + B1_Mus2 SINE Alu 1 144 -3 7 1027 263 103 0 60 chr12 57981632 57981715 -63275815 + A-rich Low_complexity Low_complexity 2 79 0 7 1027 213 39 0 0 chr12 57982272 57982298 -63275232 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1027 486 302 114 36 chr12 57982443 57982749 -63274781 - Lx8 LINE L1 -39 7434 7105 7 1027 406 302 97 23 chr12 57982813 57982989 -63274541 - Lx8 LINE L1 -814 6659 6471 7 1027 959 73 65 26 chr12 57982989 57983143 -63274387 + B2_Mm2 SINE B2 34 193 -2 7 1027 339 313 75 15 chr12 57983147 57983280 -63274250 + Lx8 LINE L1 7171 7311 -162 7 1027 288 0 0 0 chr12 57983289 57983321 -63274209 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7 1027 31 58 0 0 chr12 57983415 57983467 -63274063 + AT_rich Low_complexity Low_complexity 1 52 0 7 1027 370 178 0 98 chr12 57983641 57983784 -63273746 - Lx7 LINE L1 -284 7412 7284 7 1027 5680 245 39 12 chr12 57983784 57984770 -63272760 - Lx7 LINE L1 -522 7174 6171 7 1027 324 48 0 0 chr12 57984770 57984812 -63272718 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1027 5680 202 70 9 chr12 57984812 57986130 -63271400 - Lx7 LINE L1 -1526 6170 4765 7 1027 213 240 0 0 chr12 57988790 57988840 -63268690 + A-rich Low_complexity Low_complexity 1 50 0 7 1027 290 299 8 30 chr12 57988853 57988984 -63268546 - Lx7 LINE L1 -425 7271 7144 7 1027 198 91 0 0 chr12 57990782 57990815 -63266715 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1027 1194 115 33 0 chr12 57990901 57991084 -63266446 - B2_Mm2 SINE B2 -5 190 2 7 1027 1557 206 26 3 chr12 57991158 57991498 -63266032 - Lx9 LINE L1 -664 6980 6633 7 1027 1242 34 7 0 chr12 57991594 57991740 -63265790 + B1_Mus2 SINE Alu 1 147 0 7 1027 264 360 158 24 chr12 57994338 57994503 -63263027 - B4 SINE B4 -23 269 83 7 1027 1941 175 19 29 chr12 57994758 57995134 -63262396 + MTC LTR MaLR 50 421 0 7 1027 693 180 0 0 chr12 57995700 57995872 -63261658 + (CA)n Simple_repeat Simple_repeat 2 173 0 7 1027 303 327 180 18 chr12 57996094 57996377 -63261153 - AmnSINE1 SINE SINE -30 545 217 7 1027 495 118 0 0 chr12 57996600 57996676 -63260854 + (T)n Simple_repeat Simple_repeat 1 76 0 7 1027 239 54 27 0 chr12 57996927 57996964 -63260566 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1027 287 107 36 0 chr12 57996966 57997022 -63260508 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 7 1027 595 285 0 7 chr12 57997026 57997178 -63260352 - B3A SINE B2 -43 155 5 7 1027 229 296 144 0 chr12 57997904 57998029 -63259501 - B1F2 SINE Alu -5 144 2 7 1027 205 283 15 91 chr12 57998727 57998793 -63258737 - MIRb SINE MIR -167 101 41 7 1027 26 0 0 0 chr12 58000230 58000256 -63257274 + AT_rich Low_complexity Low_complexity 1 26 0 1 1027 200 341 22 11 chr12 58003655 58003744 -63253786 + MER5A DNA MER1_type 66 155 -34 2 1027 552 264 86 43 chr12 58003900 58004110 -63253420 + MER20 DNA MER1_type 1 219 0 3 1027 2591 165 107 11 chr12 58005033 58005678 -63251852 - Lx4B LINE L1 -17 7041 6290 4 1027 992 153 0 0 chr12 58005679 58005836 -63251694 + Lx4B LINE L1 5649 5805 -1253 5 1027 749 173 0 41 chr12 58005831 58005976 -63251554 + Lx4B LINE L1 6141 6279 -779 5 1027 256 270 54 33 chr12 58006351 58006443 -63251087 - LFSINE_Vert SINE SINE -339 120 27 6 1027 486 327 73 33 chr12 58008188 58008460 -63249070 + Lx8 LINE L1 6981 7263 -210 7 1027 374 191 15 0 chr12 58008453 58008521 -63249009 - Lx4A LINE L1 -1380 5678 5610 8 1027 5466 201 47 14 chr12 58008514 58009609 -63247921 + Lx5 LINE L1 5920 7050 0 9 1027 269 291 78 16 chr12 58009692 58009821 -63247709 + L1MC LINE L1 2139 2275 -3871 1 1027 447 68 0 0 chr12 58010342 58010401 -63247129 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1027 287 191 0 14 chr12 58010401 58010470 -63247060 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1027 339 25 0 0 chr12 58010477 58010517 -63247013 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1027 447 315 16 0 chr12 58011967 58012094 -63245436 - ID_B1 SINE B4 0 224 96 1 1027 3859 54 30 9 chr12 58012095 58012560 -63244970 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1027 1037 99 80 23 chr12 58012561 58012737 -63244793 + IAPEz-int LTR ERVK 9 194 -6287 1 1027 227 333 0 0 chr12 58012737 58012791 -63244739 + RLTR27 LTR ERVK 222 275 -34 1 1027 250 302 0 0 chr12 58012819 58012872 -63244658 + RLTR27 LTR ERVK 223 275 -34 1 1027 3325 71 56 17 chr12 58012872 58013415 -63244115 + IAPEz-int LTR ERVK 168 662 -5819 1 1027 2191 79 0 0 chr12 58013415 58013693 -63243837 + IAPEz-int LTR ERVK 1359 1636 -4845 1 1027 5752 65 12 19 chr12 58013692 58014441 -63243089 + IAPEz-int LTR ERVK 5736 6479 -2 1 1027 3775 59 35 9 chr12 58014443 58014906 -63242624 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1027 579 285 43 112 chr12 58016420 58016724 -63240806 - B4A SINE B4 -5 287 5 1 1027 230 312 84 93 chr12 58017011 58017322 -63240208 - ORR1E LTR MaLR -24 335 28 1 1027 683 295 61 16 chr12 58018501 58018811 -63238719 + MER33 DNA MER1_type 1 324 0 2 1027 222 319 14 0 chr12 58019136 58019205 -63238325 - L2b LINE L2 0 3375 3306 2 1027 354 45 0 0 chr12 58019532 58019576 -63237954 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1027 369 291 77 23 chr12 58019636 58019766 -63237764 - MIR SINE MIR -95 167 31 2 1027 1912 268 67 72 chr12 58020414 58020658 -63236872 - Lx7 LINE L1 -584 7112 6858 2 1027 855 97 43 49 chr12 58020658 58020821 -63236709 + L1_Mus3 LINE L1 6474 6635 -3 2 1027 1912 268 67 72 chr12 58020821 58021247 -63236283 - Lx7 LINE L1 -839 6857 6445 2 1027 271 316 42 10 chr12 58021263 58021359 -63236171 - Lx7 LINE L1 -1221 6475 6377 2 1027 808 258 63 38 chr12 58021390 58021628 -63235902 + Lx7 LINE L1 7117 7360 -336 2 1027 260 244 131 78 chr12 58021605 58021796 -63235734 + Lx7 LINE L1 7481 7681 -15 2 1027 265 394 76 45 chr12 58021844 58022067 -63235463 + LTR33A_ LTR ERVL 17 246 -274 2 1027 682 210 90 16 chr12 58022087 58022276 -63235254 + LTR33A_ LTR ERVL 327 529 -2 2 1027 349 337 69 0 chr12 58023022 58023197 -63234333 - MLT1C LTR MaLR -222 245 59 2 1027 320 329 0 0 chr12 58023752 58023825 -63233705 + MLT1A LTR MaLR 177 249 -125 2 1027 232 279 81 0 chr12 58023866 58023952 -63233578 + MLT1A LTR MaLR 316 408 0 2 1027 22 0 0 0 chr12 58025025 58025047 -63232483 + AT_rich Low_complexity Low_complexity 1 22 0 3 1027 4980 93 0 14 chr12 58025315 58025967 -63231563 - L1Md_F2 LINE L1 0 6582 5940 3 1027 341 315 181 44 chr12 58026881 58027130 -63230400 + MLT1A LTR MaLR 45 327 -47 3 1027 488 310 12 81 chr12 58027192 58027364 -63230166 + RSINE1 SINE B4 6 165 0 3 1027 4145 87 6 2 chr12 58027392 58027931 -63229599 + L1_Mus3 LINE L1 6094 6634 -4 3 1027 22 35 0 0 chr12 58028396 58028425 -63229105 + AT_rich Low_complexity Low_complexity 1 29 0 3 1027 323 162 72 64 chr12 58028508 58028633 -63228897 + Lx9 LINE L1 7517 7642 -2 3 1027 331 208 175 19 chr12 58029390 58029428 -63228102 + Lx6 LINE L1 7341 7378 -82 3 1027 186 43 0 0 chr12 58029428 58029451 -63228079 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 3 1027 331 208 175 19 chr12 58029451 58029515 -63228015 + Lx6 LINE L1 7379 7458 -2 3 1027 199 267 15 91 chr12 58029894 58029960 -63227570 - MIR SINE MIR -121 141 81 3 1027 411 21 0 0 chr12 58029979 58030027 -63227503 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1027 461 341 80 0 chr12 58030034 58030172 -63227358 - RSINE1 SINE B4 -14 151 3 4 1027 189 0 0 0 chr12 58030210 58030231 -63227299 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 4 1027 787 218 7 0 chr12 58031902 58032049 -63225481 + B1_Mur1 SINE Alu 1 148 -1 4 1027 185 196 0 18 chr12 58032052 58032086 -63225444 + GA-rich Low_complexity Low_complexity 1 34 0 4 1027 759 78 0 0 chr12 58032086 58032189 -63225341 + (GGGA)n Simple_repeat Simple_repeat 4 106 0 4 1027 185 196 0 18 chr12 58032189 58032211 -63225319 + polypurine Low_complexity Low_complexity 35 56 0 4 1027 768 294 92 11 chr12 58032507 58032789 -63224741 - MTD LTR MaLR -16 403 99 4 1027 392 259 105 18 chr12 58033330 58033444 -63224086 - MTD LTR MaLR -295 124 1 4 1027 975 63 0 0 chr12 58033818 58033945 -63223585 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 4 1027 289 321 90 15 chr12 58034046 58034179 -63223351 + L2b LINE L2 3233 3375 0 4 1027 26 30 0 0 chr12 58034631 58034664 -63222866 + AT_rich Low_complexity Low_complexity 1 33 0 5 1027 441 0 0 0 chr12 58034803 58034852 -63222678 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1027 333 0 0 0 chr12 58035826 58035863 -63221667 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1027 844 274 65 35 chr12 58036014 58036236 -63221294 - L1M2 LINE L1 -1193 4950 4720 5 1027 2059 227 69 18 chr12 58036236 58036280 -63221250 - MT2A LTR ERVL 0 533 479 5 1027 270 0 0 0 chr12 58036280 58036310 -63221220 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1027 2059 227 69 18 chr12 58036310 58036772 -63220758 - MT2A LTR ERVL -55 478 1 5 1027 844 274 65 35 chr12 58036772 58036889 -63220641 - L1M2 LINE L1 -1424 4719 4601 5 1027 306 0 0 0 chr12 58039742 58039776 -63217754 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1027 1200 131 0 0 chr12 58039779 58040026 -63217504 + (TA)n Simple_repeat Simple_repeat 1 247 0 5 1027 270 329 113 24 chr12 58040282 58040450 -63217080 - L2 LINE L2 -1890 1529 1347 5 1027 341 55 0 35 chr12 58041177 58041234 -63216296 + (TTTTTG)n Simple_repeat Simple_repeat 4 58 0 5 1027 1311 34 0 7 chr12 58041236 58041384 -63216146 - B1_Mm SINE Alu 0 147 1 6 1027 939 218 122 43 chr12 58041868 58042202 -63215328 - RMER21A LTR ERV1 -512 435 1 6 1027 470 87 14 0 chr12 58042392 58042461 -63215069 - ORR1A3 LTR MaLR -8 318 249 6 1027 791 154 98 0 chr12 58042461 58042604 -63214926 - ORR1A3-int LTR MaLR -34 1929 1773 6 1027 2850 134 11 2 chr12 58042604 58043067 -63214463 + ORR1B2-int LTR MaLR 24 490 -1473 6 1027 3783 123 63 3 chr12 58043067 58043671 -63213859 + ORR1B2-int LTR MaLR 1093 1732 -231 6 1027 2346 125 6 9 chr12 58043688 58044035 -63213495 - ORR1A1 LTR MaLR 0 346 1 6 1027 1610 154 178 10 chr12 58045721 58046035 -63211495 + ORR1B2 LTR MaLR 1 367 0 6 1027 752 201 35 7 chr12 58046349 58046494 -63211036 - B1_Mur2 SINE Alu 0 149 1 6 1027 565 188 14 0 chr12 58046645 58046789 -63210741 + (TA)n Simple_repeat Simple_repeat 2 147 0 6 1027 877 76 0 0 chr12 58047761 58047879 -63209651 - RLTR11B LTR ERVK 0 453 336 6 1027 7310 40 91 4 chr12 58047883 58049324 -63208206 - L1Md_F2 LINE L1 -12 6570 5055 6 1027 1967 116 48 43 chr12 58049325 58049676 -63207854 - RLTR11B LTR ERVK -100 353 1 6 1027 394 118 21 31 chr12 58049766 58049862 -63207668 + (CATA)n Simple_repeat Simple_repeat 4 98 0 6 1027 407 219 51 34 chr12 58049863 58050038 -63207492 + (CA)n Simple_repeat Simple_repeat 1 178 0 7 1027 1351 218 126 11 chr12 58050461 58050818 -63206712 - MTD LTR MaLR -4 415 18 7 1027 225 0 0 0 chr12 58051120 58051145 -63206385 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1027 1089 208 9 19 chr12 58051159 58051370 -63206160 + URR1B DNA MER1_type 3 211 -14 7 1027 207 0 0 0 chr12 58051453 58051476 -63206054 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1027 374 224 5 2 chr12 58051544 58051643 -63205887 + RMER1B Other Other 971 1052 -14 7 1027 883 75 8 8 chr12 58052294 58052428 -63205102 + (TTTTC)n Simple_repeat Simple_repeat 2 135 0 7 1027 1260 41 0 20 chr12 58052461 58052610 -63204920 - B1_Mm SINE Alu -1 146 1 7 1027 186 240 0 0 chr12 58053158 58053208 -63204322 + CT-rich Low_complexity Low_complexity 2 51 0 7 1027 339 78 0 0 chr12 58054381 58054432 -63203098 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1027 288 324 63 0 chr12 58054687 58054798 -63202732 + MLT1A1 LTR MaLR 8 125 -283 8 1027 247 243 37 0 chr12 58056209 58056316 -63201214 + (CATG)n Simple_repeat Simple_repeat 4 114 0 8 1027 351 0 0 0 chr12 58056343 58056382 -63201148 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1027 487 283 33 16 chr12 58056385 58056507 -63201023 - RSINE1 SINE B4 -14 151 28 8 1027 453 324 122 42 chr12 58057318 58057695 -63199835 + MLT1H2 LTR MaLR 18 424 -65 8 1027 294 100 50 0 chr12 58060496 58060556 -63196974 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 1027 303 333 0 9 chr12 58062001 58062107 -63195423 + Lx8 LINE L1 6196 6300 -1173 8 1027 2057 155 104 40 chr12 58062166 58062589 -63194941 + RMER19B LTR ERVK 1 450 -452 8 1027 1640 260 19 45 chr12 58062589 58063121 -63194409 + Lx8 LINE L1 6430 6947 -526 8 1027 233 392 59 0 chr12 58063548 58063650 -63193880 + L2b LINE L2 3246 3353 -22 8 1027 506 256 192 18 chr12 58063829 58063996 -63193534 - B3A SINE B2 -1 197 2 8 1027 351 0 0 0 chr12 58064140 58064179 -63193351 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1028 369 0 0 0 chr12 58065471 58065512 -63192018 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1028 302 193 0 0 chr12 58066787 58066844 -63190686 + RMER1B Other Other 133 189 -877 9 1028 228 170 0 102 chr12 58066845 58066904 -63190626 + ID_B1 SINE B4 154 206 -18 9 1028 621 48 0 23 chr12 58066867 58066941 -63190589 + B1_Mm SINE Alu 64 137 -10 9 1028 317 43 0 21 chr12 58066941 58066989 -63190541 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 9 1028 621 48 0 23 chr12 58066989 58067000 -63190530 + B1_Mm SINE Alu 138 147 0 9 1028 1487 0 0 0 chr12 58067238 58067408 -63190122 + L1_Mm LINE L1 5417 5586 -297 9 1028 9036 1 2 0 chr12 58067408 58068402 -63189128 + L1Md_A LINE L1 5587 6582 0 9 1028 3125 203 97 34 chr12 58068478 58069293 -63188237 + Lx7 LINE L1 6567 7432 -264 9 1028 200 180 40 0 chr12 58069380 58069430 -63188100 + (TAA)n Simple_repeat Simple_repeat 2 53 0 9 1028 561 213 41 17 chr12 58069536 58069708 -63187822 + L1M5 LINE L1 4887 5062 -1084 1 1028 569 218 24 16 chr12 58069775 58069901 -63187629 + B1F SINE Alu 17 143 -6 1 1028 304 259 118 25 chr12 58069938 58070057 -63187473 + L1M5 LINE L1 5176 5305 -841 1 1028 444 221 12 36 chr12 58070266 58070611 -63186919 + (CATATA)n Simple_repeat Simple_repeat 1 336 0 1 1028 195 175 0 0 chr12 58070672 58070697 -63186833 + (TATATG)n Simple_repeat Simple_repeat 3 27 0 1 1028 333 0 0 0 chr12 58070697 58070734 -63186796 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1028 195 175 0 0 chr12 58070734 58070748 -63186782 + (TATATG)n Simple_repeat Simple_repeat 1 14 0 1 1028 3536 177 52 43 chr12 58070758 58071509 -63186021 - RLTR25B LTR ERVK -226 802 45 1 1028 522 46 0 0 chr12 58071528 58071593 -63185937 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1028 259 264 18 117 chr12 58071614 58071777 -63185753 + L1M5 LINE L1 5555 5701 -472 1 1028 558 0 0 0 chr12 58071921 58071983 -63185547 + (GGGA)n Simple_repeat Simple_repeat 3 64 0 1 1028 325 256 66 82 chr12 58072047 58072230 -63185300 + L1M5 LINE L1 2800 2979 -3167 1 1028 369 0 0 0 chr12 58073171 58073212 -63184318 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1028 193 186 229 33 chr12 58074239 58074300 -63183230 - L3 LINE CR1 -3331 1158 1086 1 1028 1240 34 0 7 chr12 58074952 58075099 -63182431 + B1_Mm SINE Alu 1 146 -1 1 1028 21 36 0 0 chr12 58075121 58075149 -63182381 + AT_rich Low_complexity Low_complexity 1 28 0 1 1028 267 293 47 66 chr12 58075545 58075651 -63181879 + MLT1G3 LTR MaLR 197 300 -295 1 1028 304 373 74 54 chr12 58076342 58076600 -63180930 + L2b LINE L2 2932 3194 -181 1 1028 21 0 0 0 chr12 58077532 58077553 -63179977 + AT_rich Low_complexity Low_complexity 1 21 0 1 1028 314 314 0 0 chr12 58077917 58078003 -63179527 - L2a LINE L2 -1 3425 3340 1 1028 446 92 26 0 chr12 58078674 58078750 -63178780 + (TCTG)n Simple_repeat Simple_repeat 2 79 0 1 1028 343 222 61 20 chr12 58078765 58078867 -63178663 - PB1D10 SINE Alu -6 111 1 1 1028 366 269 106 32 chr12 58078896 58079019 -63178511 - B3 SINE B2 -67 149 18 1 1028 402 74 0 0 chr12 58079689 58079743 -63177787 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1028 217 313 48 80 chr12 58080057 58080182 -63177348 - L2a LINE L2 -5 3370 3250 1 1028 192 40 0 0 chr12 58083377 58083402 -63174128 + (G)n Simple_repeat Simple_repeat 1 25 0 1 1028 447 19 0 0 chr12 58083711 58083763 -63173767 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1028 684 194 0 0 chr12 58084472 58084611 -63172919 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 1 1028 216 0 0 0 chr12 58085981 58086005 -63171525 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1028 22 0 0 0 chr12 58086514 58086536 -63170994 + AT_rich Low_complexity Low_complexity 1 22 0 1 1028 280 190 224 12 chr12 58089848 58089933 -63167597 - U6 snRNA snRNA -1 106 4 1 1028 180 0 0 0 chr12 58090552 58090572 -63166958 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1028 251 275 185 73 chr12 58092214 58092473 -63165057 + MER33 DNA MER1_type 29 316 -8 1 1028 411 202 34 0 chr12 58093552 58093641 -63163889 + MER103 DNA DNA 25 116 -50 1 1028 394 296 48 0 chr12 58093844 58093969 -63163561 + MLT1B LTR MaLR 43 173 -217 1 1028 480 308 65 5 chr12 58094060 58094275 -63163255 - Lx8 LINE L1 -132 7341 7114 1 1028 523 308 176 35 chr12 58095367 58095623 -63161907 + B4 SINE B4 1 292 0 1 1028 219 114 0 0 chr12 58097362 58097397 -63160133 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1028 201 138 0 0 chr12 58099277 58099306 -63158224 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 1 1028 210 150 0 0 chr12 58100332 58100372 -63157158 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1028 527 303 134 56 chr12 58100931 58101162 -63156368 + B4 SINE B4 44 292 0 1 1028 515 189 0 8 chr12 58101162 58101295 -63156235 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 1028 198 118 0 0 chr12 58101312 58101346 -63156184 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1028 269 285 71 65 chr12 58101435 58101604 -63155926 + MIRc SINE MIR 21 190 -78 1 1028 545 203 55 39 chr12 58102083 58102211 -63155319 - B1F SINE Alu 0 149 20 1 1028 1302 136 56 5 chr12 58103482 58103697 -63153833 + MT2C_Mm LTR ERVL 250 475 0 1 1028 24 0 0 0 chr12 58103849 58103873 -63153657 + AT_rich Low_complexity Low_complexity 1 24 0 1 1028 294 95 0 0 chr12 58104172 58104214 -63153316 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1028 230 0 33 0 chr12 58106230 58106260 -63151270 + (CTTG)n Simple_repeat Simple_repeat 4 34 0 1 1028 417 86 0 0 chr12 58106260 58106318 -63151212 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 1 1028 681 149 99 0 chr12 58106321 58106442 -63151088 - B1_Mus1 SINE Alu -13 135 3 1 1028 506 335 19 0 chr12 58106527 58106682 -63150848 - RSINE1 SINE B4 -6 159 2 1 1028 34 42 0 0 chr12 58106745 58106793 -63150737 + AT_rich Low_complexity Low_complexity 1 48 0 1 1028 366 80 0 0 chr12 58107072 58107122 -63150408 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1028 310 228 0 37 chr12 58107156 58107238 -63150292 + (CATA)n Simple_repeat Simple_repeat 2 80 0 1 1028 342 156 0 0 chr12 58107270 58107334 -63150196 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1028 296 218 18 15 chr12 58107335 58107441 -63150089 - Lx7 LINE L1 -512 5788 5668 1 1028 456 35 0 0 chr12 58108165 58108223 -63149307 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1028 275 0 29 0 chr12 58108355 58108390 -63149140 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1028 515 241 4 16 chr12 58111560 58111703 -63145827 + PB1D9 SINE Alu 6 150 0 1 1028 22 0 0 0 chr12 58111841 58111863 -63145667 + AT_rich Low_complexity Low_complexity 1 22 0 1 1028 201 39 0 0 chr12 58112027 58112053 -63145477 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1028 250 294 43 14 chr12 58112287 58112356 -63145174 + ID4_ SINE ID 6 76 -7 1 1028 263 240 51 39 chr12 58112885 58112963 -63144567 + B1F SINE Alu 65 143 -6 1 1028 289 200 14 71 chr12 58112899 58112969 -63144561 + ID_B1 SINE B4 159 224 0 1 1028 444 82 0 0 chr12 58112969 58113030 -63144500 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1028 2609 88 98 8 chr12 58113576 58113976 -63143554 + L1_Mus3 LINE L1 6197 6632 -6 1 1028 192 254 0 0 chr12 58114164 58114223 -63143307 + (TATG)n Simple_repeat Simple_repeat 4 62 0 1 1028 259 364 0 0 chr12 58114232 58114342 -63143188 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1028 21 57 0 0 chr12 58114667 58114702 -63142828 + AT_rich Low_complexity Low_complexity 1 35 0 1 1028 587 327 40 0 chr12 58114914 58115064 -63142466 + RSINE1 SINE B4 3 158 -7 1 1028 573 200 0 9 chr12 58115571 58115682 -63141848 + ID_B1 SINE B4 107 216 -8 1 1028 251 109 105 35 chr12 58115632 58115689 -63141841 + PB1D7 SINE Alu 58 118 -2 1 1028 308 123 18 0 chr12 58116107 58116123 -63141407 + (GAAAA)n Simple_repeat Simple_repeat 3 18 0 1 1028 1013 113 6 17 chr12 58116123 58116303 -63141227 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1028 308 123 18 0 chr12 58116303 58116343 -63141187 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 1 1028 285 279 21 75 chr12 58116571 58116664 -63140866 - MIRb SINE MIR -53 215 128 1 1028 481 273 103 12 chr12 58118672 58118924 -63138606 + Lx6 LINE L1 7148 7422 -38 1 1028 504 0 0 0 chr12 58119143 58119199 -63138331 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1028 183 42 0 0 chr12 58119200 58119224 -63138306 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1028 306 0 0 0 chr12 58119293 58119327 -63138203 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1028 336 24 0 0 chr12 58119327 58119367 -63138163 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1028 878 270 17 65 chr12 58119690 58119983 -63137547 - B4 SINE B4 -12 280 2 1 1028 531 0 0 0 chr12 58121193 58121252 -63136278 + (TTTTG)n Simple_repeat Simple_repeat 3 61 0 1 1028 601 31 31 10 chr12 58121821 58121917 -63135613 + L1Md_F3 LINE L1 6486 6583 -1 1 1028 1066 90 7 0 chr12 58122069 58122214 -63135316 + B1_Mm SINE Alu 2 147 0 1 1028 366 217 87 0 chr12 58123228 58123320 -63134210 - MTD LTR MaLR -312 107 8 1 1028 933 312 45 31 chr12 58123854 58124208 -63133322 - MLT1B LTR MaLR -11 379 21 1 1028 634 175 127 60 chr12 58124282 58124416 -63133114 + B1_Mur1 SINE Alu 1 143 -6 1 1028 361 194 19 0 chr12 58124420 58124455 -63133075 + polypurine Low_complexity Low_complexity 4 38 0 1 1028 1074 144 0 0 chr12 58124455 58124635 -63132895 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1028 361 194 19 0 chr12 58124635 58124702 -63132828 + GA-rich Low_complexity Low_complexity 39 107 0 1 1028 204 40 0 0 chr12 58124845 58124870 -63132660 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 1 1028 1205 96 0 6 chr12 58124887 58125066 -63132464 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1028 712 183 46 0 chr12 58125099 58125230 -63132300 - B1_Mur3 SINE Alu -8 141 5 1 1028 731 276 113 6 chr12 58125445 58125780 -63131750 - L1MC4 LINE L1 -900 7142 6772 1 1028 333 319 26 0 chr12 58126098 58126211 -63131319 - L1MEd LINE L1 -5426 693 578 1 1028 319 281 12 0 chr12 58126518 58126600 -63130930 + ID4 SINE ID 1 83 0 1 1028 33 0 0 0 chr12 58126787 58126820 -63130710 + AT_rich Low_complexity Low_complexity 1 33 0 1 1028 21 0 0 0 chr12 58127088 58127109 -63130421 + AT_rich Low_complexity Low_complexity 1 21 0 1 1028 490 296 90 16 chr12 58127223 58127545 -63129985 - L1ME4a LINE L1 -202 5922 5577 1 1028 333 272 11 21 chr12 58128544 58128638 -63128892 + MER5B DNA MER1_type 78 170 -8 1 1028 303 28 0 0 chr12 58129686 58129722 -63127808 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1028 510 61 0 0 chr12 58129886 58129952 -63127578 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 1 1028 423 0 0 0 chr12 58129966 58130013 -63127517 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 1028 1246 34 0 13 chr12 58130018 58130167 -63127363 - B1_Mus2 SINE Alu 0 147 1 2 1028 332 137 105 0 chr12 58130171 58130266 -63127264 - Lx6 LINE L1 -8 7452 7348 2 1028 450 0 0 0 chr12 58130997 58131047 -63126483 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1028 382 332 66 20 chr12 58131388 58131585 -63125945 - MIRb SINE MIR -45 223 18 2 1028 331 217 48 12 chr12 58134963 58135047 -63122483 + B3A SINE B2 1 87 -111 2 1028 404 321 99 14 chr12 58135645 58135857 -63121673 + MLT1D LTR MaLR 263 492 -13 2 1028 207 100 0 0 chr12 58136229 58136259 -63121271 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 2 1028 241 250 30 30 chr12 58136259 58136325 -63121205 - MER45A DNA Tip100 -35 143 78 2 1028 736 293 152 17 chr12 58136367 58136669 -63120861 - MLT1A0 LTR MaLR -11 354 12 2 1028 866 248 44 22 chr12 58137695 58137922 -63119608 + MTD LTR MaLR 185 416 -3 2 1028 24 0 0 0 chr12 58138132 58138156 -63119374 + AT_rich Low_complexity Low_complexity 1 24 0 2 1028 2901 77 2 52 chr12 58138641 58139082 -63118448 + BGLII LTR ERVK 3 421 0 2 1028 31 0 0 0 chr12 58140217 58140248 -63117282 + AT_rich Low_complexity Low_complexity 1 31 0 2 1028 946 266 73 1 chr12 58140622 58140945 -63116585 + L1MC1 LINE L1 5235 5582 -751 2 1028 337 262 53 15 chr12 58141064 58141196 -63116334 + L1MC1 LINE L1 5849 5985 -348 2 1028 1964 150 14 28 chr12 58141196 58141552 -63115978 + Lx4A LINE L1 6510 6860 -198 2 1028 306 197 80 153 chr12 58141560 58141710 -63115820 - L1_Mur3 LINE L1 -416 5464 5326 2 1028 3340 73 2 2 chr12 58141711 58142148 -63115382 - L1_Mus1 LINE L1 0 6567 6131 2 1028 1095 175 10 29 chr12 58142150 58142356 -63115174 + Lx4A LINE L1 6855 7056 -2 2 1028 879 102 0 0 chr12 58142381 58142509 -63115021 + (GGGAA)n Simple_repeat Simple_repeat 2 129 0 2 1028 725 129 16 0 chr12 58142509 58142633 -63114897 + (GAAA)n Simple_repeat Simple_repeat 1 126 0 2 1028 243 290 49 35 chr12 58143059 58143202 -63114328 - MIRb SINE MIR -108 168 19 2 1028 1165 34 14 7 chr12 58143569 58143715 -63113815 + B1_Mus2 SINE Alu 1 147 0 2 1028 439 284 149 20 chr12 58143763 58144018 -63113512 + B4A SINE B4 3 290 -2 2 1028 187 218 0 49 chr12 58144020 58144102 -63113428 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 2 1028 710 274 5 79 chr12 58144565 58144755 -63112775 + B3A SINE B2 7 182 -16 2 1028 237 159 0 0 chr12 58145702 58145746 -63111784 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1028 188 292 83 73 chr12 58145873 58145969 -63111561 - L2 LINE L2 -492 2927 2831 2 1028 31215 74 1 2 chr12 58146297 58151351 -63106179 + L1Md_F2 LINE L1 535 5585 -298 2 1028 8237 38 3 4 chr12 58151352 58152349 -63105181 + L1Md_F2 LINE L1 5587 6582 0 2 1028 864 167 204 0 chr12 58152589 58152775 -63104755 - URR1A DNA MER1_type -1 225 2 2 1028 578 282 45 22 chr12 58152781 58152959 -63104571 + B3A SINE B2 1 182 -16 2 1028 180 0 0 0 chr12 58152975 58152995 -63104535 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1028 12657 208 87 79 chr12 58153149 58153826 -63103704 + Lx4B LINE L1 802 1502 -4378 2 1028 1007 94 0 14 chr12 58153826 58153966 -63103564 + B1_Mus1 SINE Alu 5 142 -6 2 1028 387 0 0 0 chr12 58153969 58154012 -63103518 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2 1028 14101 173 90 47 chr12 58154012 58155078 -63102452 + Lx4B LINE L1 1503 2661 -4397 2 1028 3451 114 30 9 chr12 58155078 58155607 -63101923 + LTRIS2 LTR ERV1 25 564 0 2 1028 14101 173 90 47 chr12 58155607 58159643 -63097887 + Lx4B LINE L1 2662 7053 -5 2 1028 325 317 0 29 chr12 58161345 58161449 -63096081 - PB1D10 SINE Alu -10 107 7 2 1028 264 59 0 0 chr12 58162966 58163000 -63094530 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1028 271 165 0 66 chr12 58163576 58163667 -63093863 + T-rich Low_complexity Low_complexity 1 85 0 2 1028 729 112 0 0 chr12 58163733 58163840 -63093690 - B2_Mm2 SINE B2 -88 107 1 2 1028 709 241 118 24 chr12 58164352 58164667 -63092863 - ORR1E LTR MaLR 0 370 1 2 1028 1219 21 7 7 chr12 58165316 58165461 -63092069 + B1_Mm SINE Alu 3 147 0 2 1028 339 255 26 58 chr12 58165508 58165662 -63091868 + B3 SINE B2 3 216 0 2 1028 275 183 0 0 chr12 58165691 58165751 -63091779 + Lx5 LINE L1 6988 7047 -3 2 1028 1129 131 17 0 chr12 58165849 58166024 -63091506 + B2_Mm1t SINE B2 2 179 -14 2 1028 295 92 471 0 chr12 58166071 58166156 -63091374 + B2_Mm2 SINE B2 67 191 -4 2 1028 412 214 0 35 chr12 58166387 58166503 -63091027 + L1MA7 LINE L1 6171 6282 -9 2 1028 25 51 0 0 chr12 58166629 58166668 -63090862 + AT_rich Low_complexity Low_complexity 1 39 0 2 1028 2638 107 66 0 chr12 58166979 58167371 -63090159 + RLTR23 LTR ERV1 10 427 -3 2 1028 182 91 0 29 chr12 58167396 58167430 -63090100 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2 1028 280 43 43 0 chr12 58167894 58167940 -63089590 + (TTG)n Simple_repeat Simple_repeat 2 49 0 2 1028 348 315 11 11 chr12 58170051 58170137 -63087393 + B4A SINE B4 1 86 -206 2 1028 3652 168 117 44 chr12 58170137 58171093 -63086437 + RLTR25B LTR ERVK 2 949 -154 2 1028 405 0 0 0 chr12 58171093 58171138 -63086392 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1028 3044 238 78 87 chr12 58171138 58171290 -63086240 + RLTR25B LTR ERVK 950 1101 -2 2 1028 397 258 181 38 chr12 58171290 58171409 -63086121 + B4A SINE B4 152 289 -3 2 1028 480 111 0 0 chr12 58171722 58171794 -63085736 + (T)n Simple_repeat Simple_repeat 1 72 0 2 1028 423 0 0 0 chr12 58174462 58174509 -63083021 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1028 390 85 0 0 chr12 58176076 58176135 -63081395 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1028 23 0 0 0 chr12 58176355 58176378 -63081152 + AT_rich Low_complexity Low_complexity 1 23 0 2 1028 1141 109 28 11 chr12 58177020 58177196 -63080334 + B2_Mm2 SINE B2 3 181 -14 2 1028 340 108 5 50 chr12 58177228 58177345 -63080185 + B2_Mm2 SINE B2 47 193 -2 2 1028 219 69 0 0 chr12 58177345 58177374 -63080156 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 1028 200 61 61 0 chr12 58177578 58177611 -63079919 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 1028 22 0 0 0 chr12 58178585 58178607 -63078923 + AT_rich Low_complexity Low_complexity 1 22 0 2 1028 274 286 0 0 chr12 58178684 58178761 -63078769 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1028 333 252 0 0 chr12 58178772 58178907 -63078623 + (CA)n Simple_repeat Simple_repeat 2 136 0 2 1028 22 0 0 0 chr12 58179530 58179552 -63077978 + AT_rich Low_complexity Low_complexity 1 22 0 2 1028 1175 41 0 27 chr12 58179715 58179865 -63077665 + B1_Mm SINE Alu 2 147 0 2 1028 238 297 67 38 chr12 58181114 58181219 -63076311 + ORR1E LTR MaLR 6 113 -246 2 1028 843 253 94 6 chr12 58182394 58182702 -63074828 - L1MB2 LINE L1 -169 6143 5815 2 1028 201 121 0 0 chr12 58184262 58184295 -63073235 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1028 519 17 0 0 chr12 58184415 58184475 -63073055 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1028 353 75 19 0 chr12 58186101 58186154 -63071376 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2 1028 887 298 62 7 chr12 58187401 58187675 -63069855 + B4 SINE B4 4 292 0 2 1028 188 317 33 16 chr12 58188725 58188786 -63068744 - L2b LINE L2 -20 3355 3294 2 1028 874 313 75 6 chr12 58188860 58189191 -63068339 + ORR1E LTR MaLR 4 357 -2 2 1028 24 77 0 0 chr12 58189423 58189475 -63068055 + AT_rich Low_complexity Low_complexity 1 52 0 2 1028 1992 55 12 0 chr12 58191161 58191418 -63066112 - L1_Mus1 LINE L1 -1 6566 6307 2 1028 1723 42 0 0 chr12 58191420 58191634 -63065896 + L1_Mus1 LINE L1 6097 6310 -257 2 1028 672 260 120 65 chr12 58191844 58192120 -63065410 - B4A SINE B4 0 292 2 2 1028 411 304 43 15 chr12 58192928 58193067 -63064463 + B1F SINE Alu 7 149 0 2 1028 190 386 22 11 chr12 58194359 58194448 -63063082 + MIR SINE MIR 25 114 -94 2 1028 309 340 40 10 chr12 58194592 58194693 -63062837 - B1F1 SINE Alu -45 104 1 2 1028 308 323 85 47 chr12 58194751 58194962 -63062568 - MIR SINE MIR -36 232 14 2 1029 23 86 0 0 chr12 58196625 58196683 -63060847 + AT_rich Low_complexity Low_complexity 1 58 0 2 1029 3156 158 137 56 chr12 58198230 58198888 -63058642 + RMER13B LTR ERVK 1 711 -197 2 1029 337 354 106 30 chr12 58199336 58199534 -63057996 - LTR33 LTR ERVL -200 315 103 2 1029 576 40 0 0 chr12 58199793 58199868 -63057662 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 1029 575 224 115 0 chr12 58199948 58200131 -63057399 - Lx7 LINE L1 -375 7321 7118 2 1029 457 347 58 15 chr12 58201102 58201307 -63056223 + RMER15 LTR ERVL 347 560 -15 2 1029 848 291 19 5 chr12 58201709 58201923 -63055607 + B4A SINE B4 1 217 -75 2 1029 674 152 8 0 chr12 58201954 58202079 -63055451 + (CTA)n Simple_repeat Simple_repeat 2 127 0 2 1029 204 232 18 0 chr12 58202080 58202136 -63055394 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1029 1064 82 7 26 chr12 58202186 58202337 -63055193 + B1_Mus1 SINE Alu 1 148 0 2 1029 180 0 0 0 chr12 58202355 58202375 -63055155 + (CAT)n Simple_repeat Simple_repeat 1 20 0 2 1029 238 254 91 0 chr12 58202617 58202672 -63054858 - ID4 SINE ID -10 73 14 2 1029 536 273 115 13 chr12 58202815 58202971 -63054559 + MLT1H1 LTR MaLR 382 553 -2 2 1029 285 333 9 19 chr12 58202971 58203078 -63054452 + MLT1H1-int LTR MaLR 1 106 -1303 2 1029 372 209 150 26 chr12 58203156 58203269 -63054261 + MTEa LTR MaLR 245 371 -8 2 1029 836 201 13 0 chr12 58203283 58203432 -63054098 + MTEa-int LTR MaLR 8 158 -1422 2 1029 1284 292 86 26 chr12 58203416 58203870 -63053660 - MTE-int LTR MaLR -952 628 148 2 1029 656 322 44 78 chr12 58204053 58204373 -63053157 + MLT1H1 LTR MaLR 37 345 -210 2 1029 213 39 0 0 chr12 58205494 58205520 -63052010 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1029 550 124 72 0 chr12 58206508 58206605 -63050925 - Lx2 LINE L1 -1 6996 6893 2 1029 246 172 17 0 chr12 58206662 58206720 -63050810 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 1029 551 206 0 32 chr12 58206723 58206857 -63050673 + B1_Mur2 SINE Alu 1 120 0 2 1029 187 359 38 84 chr12 58207186 58207237 -63050293 - MIRb SINE MIR -23 245 200 2 1029 1022 216 20 0 chr12 58207237 58207441 -63050089 + B3 SINE B2 1 208 -8 3 1029 203 340 54 49 chr12 58207441 58207602 -63049928 - MIR SINE MIR -69 199 43 2 1029 396 0 0 0 chr12 58207915 58207959 -63049571 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1029 327 245 146 36 chr12 58208309 58208419 -63049111 + MLT1A0 LTR MaLR 10 131 -234 3 1029 277 290 130 9 chr12 58208448 58208556 -63048974 + MLT1A0 LTR MaLR 328 448 -19 3 1029 306 234 25 25 chr12 58208664 58208743 -63048787 - MER102c DNA MER1_type -186 145 67 3 1029 813 307 49 63 chr12 58208929 58209339 -63048191 + Lx8 LINE L1 7051 7454 -19 3 1029 231 36 0 0 chr12 58209482 58209510 -63048020 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 1029 183 162 0 0 chr12 58210229 58210266 -63047264 + GA-rich Low_complexity Low_complexity 2 38 0 3 1029 593 315 81 74 chr12 58211934 58212393 -63045137 + Ricksha_c DNA MuDR 360 821 -1227 3 1029 831 209 104 26 chr12 58212416 58212608 -63044922 - B3 SINE B2 -9 207 1 3 1029 2157 189 43 0 chr12 58212912 58213308 -63044222 - MTC LTR MaLR -8 413 1 3 1029 229 272 74 10 chr12 58213526 58213627 -63043903 - L2c LINE L2 -1 3425 3291 3 1029 318 293 34 128 chr12 58214740 58214975 -63042555 + L1MC4 LINE L1 7444 7656 -386 3 1029 439 299 96 69 chr12 58215473 58215525 -63042005 + L1MEg LINE L1 843 888 -5196 3 1029 4560 82 6 13 chr12 58215525 58216157 -63041373 + L1_Mus4 LINE L1 6007 6634 -2 3 1029 439 299 96 69 chr12 58216157 58216510 -63041020 + L1MEg LINE L1 889 1259 -4825 3 1029 288 0 0 0 chr12 58216561 58216593 -63040937 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1029 22 35 0 0 chr12 58217331 58217360 -63040170 + GC_rich Low_complexity Low_complexity 1 29 0 3 1029 23 33 0 0 chr12 58218391 58218421 -63039109 + AT_rich Low_complexity Low_complexity 1 30 0 3 1029 261 0 0 0 chr12 58218620 58218649 -63038881 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1029 311 250 109 25 chr12 58219134 58219253 -63038277 - CR1_Mam LINE CR1 -49 2155 2027 3 1029 243 255 47 84 chr12 58219341 58219448 -63038082 - CR1_Mam LINE CR1 -214 1990 1888 3 1029 231 330 11 33 chr12 58220225 58220316 -63037214 - MER117 DNA MER1_type -91 106 18 3 1029 294 313 35 50 chr12 58220477 58220618 -63036912 - MER104 DNA Tc2 -3 178 40 3 1029 222 62 0 0 chr12 58220881 58220913 -63036617 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 3 1029 1138 76 0 0 chr12 58220920 58221064 -63036466 - B1_Mus1 SINE Alu -2 146 3 3 1029 191 36 0 35 chr12 58221552 58221581 -63035949 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1029 296 358 51 17 chr12 58222708 58222884 -63034646 + LTR33 LTR ERVL 108 289 -226 3 1029 869 144 0 11 chr12 58223110 58223285 -63034245 + CT-rich Low_complexity Low_complexity 3 175 0 3 1029 22 0 0 0 chr12 58223672 58223694 -63033836 + AT_rich Low_complexity Low_complexity 1 22 0 3 1029 360 0 0 0 chr12 58225030 58225070 -63032460 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1029 444 67 0 0 chr12 58226350 58226410 -63031120 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1029 441 0 0 0 chr12 58226545 58226594 -63030936 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1029 236 158 17 17 chr12 58227293 58227351 -63030179 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1029 762 273 83 15 chr12 58227352 58227616 -63029914 + MLT1A0 LTR MaLR 17 298 -67 3 1029 190 308 149 33 chr12 58227747 58227898 -63029632 + L2c LINE L2 3189 3386 -1 3 1029 858 259 125 48 chr12 58228590 58228926 -63028604 + MTE2a LTR MaLR 1 362 -17 3 1029 464 312 134 12 chr12 58229382 58229554 -63027976 + Tigger5 DNA MER2_type 1 193 -2213 3 1029 232 268 0 27 chr12 58230679 58230752 -63026778 + (TATATG)n Simple_repeat Simple_repeat 5 75 0 3 1029 300 300 219 69 chr12 58230830 58231096 -63026434 - MER44A DNA MER2_type -33 306 1 3 1029 274 271 68 16 chr12 58231100 58231197 -63026333 - MIR SINE MIR -170 106 8 3 1029 207 367 101 8 chr12 58231209 58231338 -63026192 + MER5A DNA MER1_type 21 161 -28 3 1029 879 279 75 9 chr12 58232166 58232485 -63025045 + L1MB8 LINE L1 5494 5833 -345 3 1029 31 0 0 0 chr12 58232800 58232831 -63024699 + AT_rich Low_complexity Low_complexity 1 31 0 3 1029 3853 218 85 29 chr12 58233063 58233741 -63023789 + Lx9 LINE L1 6532 7253 -391 3 1029 260 27 27 0 chr12 58233741 58233778 -63023752 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1029 3853 218 85 29 chr12 58233778 58234118 -63023412 + Lx9 LINE L1 7254 7608 -36 3 1029 980 104 172 0 chr12 58234189 58234352 -63023178 - B2_Mm1t SINE B2 -1 192 2 3 1029 190 337 36 12 chr12 58234384 58234468 -63023062 + L2 LINE L2 2776 2861 -558 3 1029 25 31 0 0 chr12 58235555 58235587 -63021943 + AT_rich Low_complexity Low_complexity 1 32 0 3 1029 1216 217 119 12 chr12 58235647 58235983 -63021547 - ORR1D1 LTR MaLR 0 374 3 3 1029 402 318 83 11 chr12 58236155 58236336 -63021194 + MIR SINE MIR 66 259 -3 3 1029 240 100 0 0 chr12 58237591 58237631 -63019899 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1029 32 43 0 0 chr12 58237631 58237677 -63019853 + AT_rich Low_complexity Low_complexity 1 46 0 3 1029 435 304 34 73 chr12 58237739 58237945 -63019585 + B3A SINE B2 1 198 0 3 1029 495 0 0 0 chr12 58238731 58238786 -63018744 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1029 390 101 0 0 chr12 58238786 58238854 -63018676 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1029 1433 311 96 17 chr12 58240815 58241391 -63016139 + MER82 DNA MER2_type 33 653 0 3 1029 291 352 44 44 chr12 58241556 58241669 -63015861 + MLT1K LTR MaLR 161 273 -322 3 1029 354 215 32 0 chr12 58242810 58242903 -63014627 + L1MA5 LINE L1 6198 6293 -7 3 1029 252 264 76 76 chr12 58243330 58243353 -63014177 + B4A SINE B4 82 209 -80 3 1029 298 258 45 67 chr12 58243353 58243458 -63014072 + B1F2 SINE Alu 15 117 -32 3 1029 810 148 26 0 chr12 58244122 58244277 -63013253 - B1_Mur2 SINE Alu -6 143 1 3 1029 462 252 33 20 chr12 58244629 58244779 -63012751 + MER121 Unknown Unknown 103 254 -158 3 1029 1099 90 139 0 chr12 58246314 58246480 -63011050 + B2_Mm2 SINE B2 1 189 -6 3 1029 405 0 0 0 chr12 58247095 58247140 -63010390 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1029 263 195 0 25 chr12 58248168 58248247 -63009283 + GA-rich Low_complexity Low_complexity 1 77 0 3 1029 433 325 161 54 chr12 58249411 58249691 -63007839 + MLT1A LTR MaLR 65 374 0 3 1029 235 341 96 29 chr12 58249939 58250075 -63007455 - MIRb SINE MIR -122 146 2 3 1029 22 70 0 0 chr12 58250189 58250232 -63007298 + AT_rich Low_complexity Low_complexity 1 43 0 3 1029 286 319 63 13 chr12 58250446 58250581 -63006949 - MIR SINE MIR -50 218 72 3 1029 201 360 33 11 chr12 58250840 58250930 -63006600 + MIR SINE MIR 42 133 -75 3 1029 282 56 0 0 chr12 58251170 58251206 -63006324 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1029 519 60 0 0 chr12 58252118 58252185 -63005345 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 3 1029 1147 29 0 0 chr12 58252388 58252525 -63005005 + B1_Mus2 SINE Alu 1 137 -10 3 1029 762 93 0 0 chr12 58252525 58252633 -63004897 + (GGAAA)n Simple_repeat Simple_repeat 3 110 0 3 1029 1195 83 0 22 chr12 58252635 58252819 -63004711 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 3 1029 772 105 24 16 chr12 58253306 58253432 -63004098 + B1_Mur2 SINE Alu 21 147 -2 3 1029 1107 112 0 0 chr12 58253540 58253710 -63003820 + (TTCC)n Simple_repeat Simple_repeat 1 170 0 3 1029 1671 71 8 40 chr12 58254616 58254866 -63002664 + L1_Mus3 LINE L1 6397 6638 0 3 1029 1102 235 99 34 chr12 58255036 58255388 -63002142 + MTEa LTR MaLR 5 379 0 3 1029 378 0 0 0 chr12 58257320 58257362 -63000168 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1029 593 275 84 0 chr12 58257404 58257546 -62999984 + B3A SINE B2 1 154 -44 3 1029 369 0 0 0 chr12 58257555 58257596 -62999934 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1029 378 0 0 0 chr12 58257727 58257769 -62999761 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1029 465 259 92 9 chr12 58260367 58260504 -62997026 + B1F SINE Alu 1 145 -4 3 1029 201 94 0 0 chr12 58260505 58260537 -62996993 + (TAA)n Simple_repeat Simple_repeat 3 34 0 3 1029 2241 226 116 74 chr12 58262096 58262898 -62994632 + RMER1C Other Other 496 1331 -11 3 1029 492 99 0 0 chr12 58265117 58265188 -62992342 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 3 1029 480 224 162 8 chr12 58265259 58265376 -62992154 + B1_Mur1 SINE Alu 1 135 -14 3 1029 1330 264 24 98 chr12 58265378 58265883 -62991647 + Lx9 LINE L1 7106 7580 -64 3 1029 4546 50 0 4 chr12 58265883 58266445 -62991085 + L1Md_F2 LINE L1 6011 6570 -12 3 1029 1330 264 24 98 chr12 58266445 58266519 -62991011 + Lx9 LINE L1 7581 7642 -2 3 1029 24 0 0 0 chr12 58266522 58266546 -62990984 + AT_rich Low_complexity Low_complexity 1 24 0 3 1029 24 32 0 0 chr12 58266762 58266793 -62990737 + AT_rich Low_complexity Low_complexity 1 31 0 3 1029 236 222 19 48 chr12 58267380 58267484 -62990046 - Lx7 LINE L1 -18 7678 7578 3 1029 25 31 0 0 chr12 58267815 58267847 -62989683 + AT_rich Low_complexity Low_complexity 1 32 0 3 1029 409 305 139 47 chr12 58267976 58268293 -62989237 - ORR1E LTR MaLR -7 352 7 3 1029 494 260 102 0 chr12 58268700 58268827 -62988703 + RSINE1 SINE B4 2 141 -24 3 1029 513 47 0 0 chr12 58268827 58268891 -62988639 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1029 1106 78 0 0 chr12 58269192 58269334 -62988196 + B1_Mus2 SINE Alu 1 142 -5 3 1029 311 42 42 0 chr12 58269337 58269385 -62988145 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 3 1029 518 45 0 0 chr12 58269601 58269667 -62987863 + B2_Mm2 SINE B2 2 67 -128 3 1029 304 308 15 0 chr12 58269702 58269767 -62987763 + B1_Mur1 SINE Alu 71 136 -13 3 1029 375 296 98 12 chr12 58271297 58271461 -62986069 - MER5B DNA MER1_type 0 178 1 3 1029 1712 242 48 5 chr12 58272057 58272456 -62985074 - RMER4A LTR ERVK -13 453 38 4 1029 23 33 0 0 chr12 58273505 58273535 -62983995 + AT_rich Low_complexity Low_complexity 1 30 0 4 1029 390 276 67 52 chr12 58274383 58274517 -62983013 - B1F SINE Alu -4 145 10 4 1029 360 353 30 49 chr12 58274389 58274553 -62982977 - ID_B1 SINE B4 -8 216 56 4 1029 3053 9 0 0 chr12 58274751 58275094 -62982436 + L1Md_A LINE L1 5244 5586 -297 4 1029 8789 14 0 0 chr12 58275094 58276090 -62981440 + L1Md_A LINE L1 5587 6582 0 4 1029 281 210 41 39 chr12 58276291 58276382 -62981148 + L1MD LINE L1 5621 5718 -456 4 1029 665 249 119 15 chr12 58276406 58276675 -62980855 + L1MC2 LINE L1 5669 5965 -379 4 1029 21 0 0 0 chr12 58277160 58277181 -62980349 + AT_rich Low_complexity Low_complexity 1 21 0 4 1029 327 49 0 0 chr12 58278115 58278156 -62979374 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1029 1325 73 37 48 chr12 58278193 58278381 -62979149 - B2_Mm2 SINE B2 -8 187 2 4 1029 32 0 0 0 chr12 58278383 58278415 -62979115 + AT_rich Low_complexity Low_complexity 1 32 0 4 1029 1037 88 0 35 chr12 58279110 58279252 -62978278 + B1_Mus1 SINE Alu 1 137 -11 4 1029 335 304 94 0 chr12 58279408 58279532 -62977998 + B1F1 SINE Alu 3 147 0 4 1029 1279 68 0 0 chr12 58279649 58279797 -62977733 - B1_Mus1 SINE Alu 0 148 1 4 1029 512 304 41 6 chr12 58279895 58280067 -62977463 - MER5B DNA MER1_type 0 178 1 4 1029 331 282 78 50 chr12 58280137 58280316 -62977214 - MIR SINE MIR -52 210 27 4 1029 193 260 39 39 chr12 58281088 58281140 -62976390 + L2b LINE L2 3320 3371 -4 4 1029 188 293 56 79 chr12 58282039 58282165 -62975365 - MIR SINE MIR -56 206 84 4 1029 225 94 0 0 chr12 58282446 58282478 -62975052 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1029 249 33 0 0 chr12 58282488 58282518 -62975012 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1029 1696 51 0 5 chr12 58282757 58282953 -62974577 + B2_Mm2 SINE B2 1 195 0 4 1029 330 98 0 0 chr12 58283131 58283182 -62974348 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1029 321 250 71 0 chr12 58283219 58283303 -62974227 - L1M2 LINE L1 -2937 3206 3117 4 1029 3487 58 143 11 chr12 58283309 58283777 -62973753 - L1_Mus3 LINE L1 -1 6637 6108 4 1029 229 150 32 48 chr12 58283825 58283888 -62973642 + (TTG)n Simple_repeat Simple_repeat 2 63 0 4 1029 497 253 13 82 chr12 58283942 58284101 -62973429 - B1_Mur1 SINE Alu 0 149 2 4 1029 815 65 0 0 chr12 58284112 58284220 -62973310 - B1_Mm SINE Alu 0 147 40 4 1029 302 135 105 26 chr12 58284155 58284231 -62973299 - RLTR25B LTR ERVK -519 509 428 4 1029 360 0 0 0 chr12 58284283 58284323 -62973207 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1029 1089 106 14 0 chr12 58284327 58284468 -62973062 - B1_Mus1 SINE Alu -5 143 1 4 1029 1096 94 0 0 chr12 58284615 58284753 -62972777 + B1_Mus1 SINE Alu 1 138 -10 4 1029 261 0 0 0 chr12 58284753 58284782 -62972748 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1029 315 0 0 0 chr12 58284783 58284818 -62972712 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 4 1029 189 0 0 0 chr12 58285271 58285292 -62972238 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1029 234 0 0 0 chr12 58285732 58285758 -62971772 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 4 1029 21 36 0 0 chr12 58286017 58286045 -62971485 + AT_rich Low_complexity Low_complexity 1 28 0 4 1029 203 191 24 0 chr12 58286832 58286874 -62970656 + (CAA)n Simple_repeat Simple_repeat 2 44 0 4 1029 1125 48 34 8 chr12 58287531 58287914 -62969616 + (TAGA)n Simple_repeat Simple_repeat 1 393 0 4 1029 444 258 255 12 chr12 58288187 58288442 -62969088 + Lx8 LINE L1 7155 7471 -2 4 1029 1267 61 0 0 chr12 58288774 58288922 -62968608 + B1_Mus1 SINE Alu 1 148 0 4 1029 449 153 35 0 chr12 58289355 58289440 -62968090 + B4A SINE B4 191 278 -14 4 1029 331 270 104 155 chr12 58289648 58289881 -62967649 + MLT1C LTR MaLR 171 415 -52 4 1029 448 263 59 29 chr12 58290312 58290414 -62967116 + RSINE1 SINE B4 43 147 -18 4 1029 264 274 148 31 chr12 58292277 58292439 -62965091 + B2_Mm2 SINE B2 2 182 -13 4 1029 190 323 109 31 chr12 58292938 58293066 -62964464 + MIR SINE MIR 108 245 -17 4 1029 2193 161 86 59 chr12 58293073 58293168 -62964362 + MTC LTR MaLR 3 85 -336 4 1029 1278 27 0 13 chr12 58293168 58293317 -62964213 + B1_Mm SINE Alu 1 147 0 4 1029 2193 161 86 59 chr12 58293317 58293629 -62963901 + MTC LTR MaLR 86 421 0 4 1029 228 347 34 8 chr12 58294117 58294236 -62963294 - MER5A1 DNA MER1_type 0 166 45 4 1029 458 152 7 65 chr12 58294310 58294416 -62963114 - B1_Mur2 SINE Alu 0 120 17 4 1029 1265 175 61 15 chr12 58294410 58294740 -62962790 - ORR1A1-int LTR MaLR -1041 751 407 4 1029 1250 114 17 11 chr12 58294884 58295062 -62962468 + B2_Mm1t SINE B2 1 179 -14 4 1029 304 112 374 19 chr12 58295113 58295220 -62962310 + B2_Mm2 SINE B2 47 191 -4 4 1029 522 262 149 0 chr12 58295739 58295880 -62961650 + B3A SINE B2 2 163 -35 4 1029 24 0 0 0 chr12 58296243 58296267 -62961263 + AT_rich Low_complexity Low_complexity 1 24 0 4 1029 1211 62 0 0 chr12 58296458 58296602 -62960928 + B1_Mm SINE Alu 1 144 -3 4 1029 279 0 0 0 chr12 58296602 58296633 -62960897 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1029 314 98 0 19 chr12 58296633 58296684 -62960846 + (ATG)n Simple_repeat Simple_repeat 1 51 0 4 1029 432 0 0 0 chr12 58296880 58296928 -62960602 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1029 22 0 0 0 chr12 58297137 58297159 -62960371 + AT_rich Low_complexity Low_complexity 1 22 0 4 1029 24 0 0 0 chr12 58297183 58297207 -62960323 + AT_rich Low_complexity Low_complexity 1 24 0 4 1029 940 267 81 15 chr12 58299097 58299356 -62958174 + B4A SINE B4 2 277 -15 4 1029 485 216 33 7 chr12 58299385 58299656 -62957874 + (CA)n Simple_repeat Simple_repeat 1 278 0 4 1029 1255 55 0 7 chr12 58299768 58299914 -62957616 + B1_Mus2 SINE Alu 3 147 0 4 1029 809 171 156 5 chr12 58299950 58300161 -62957369 + Lx9 LINE L1 7394 7636 -8 4 1029 296 116 402 0 chr12 58300302 58300404 -62957126 - B2_Mm2 SINE B2 -6 189 47 4 1029 1024 149 16 59 chr12 58300433 58300619 -62956911 - B2_Mm1t SINE B2 -14 179 2 4 1029 474 260 50 57 chr12 58300986 58301145 -62956385 - RSINE1 SINE B4 -6 159 2 4 1029 1597 62 16 0 chr12 58301511 58301703 -62955827 - B2_Mm2 SINE B2 0 195 1 4 1029 1214 149 6 0 chr12 58301709 58301890 -62955640 - B2_Mm1t SINE B2 -10 183 2 4 1029 207 0 0 0 chr12 58302117 58302140 -62955390 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1029 1098 51 7 0 chr12 58302140 58302277 -62955253 - B1_Mm SINE Alu -3 144 7 4 1029 561 231 37 104 chr12 58302277 58302304 -62955226 - B4 SINE B4 -70 222 70 4 1029 2104 191 7 52 chr12 58302429 58302888 -62954642 + Lx2B LINE L1 6521 6958 -42 4 1029 23 0 0 0 chr12 58302957 58302980 -62954550 + AT_rich Low_complexity Low_complexity 1 23 0 4 1029 720 259 82 81 chr12 58303133 58303581 -62953949 - MTD-int LTR MaLR -729 529 1 4 1029 1152 251 153 16 chr12 58303581 58303946 -62953584 - MTD LTR MaLR 0 419 5 4 1029 285 294 51 86 chr12 58303951 58304126 -62953404 + L1M4c LINE L1 1520 1647 -5087 4 1029 1118 208 119 11 chr12 58304129 58304406 -62953124 + RMER21B LTR ERV1 261 567 -275 4 1029 251 262 0 62 chr12 58304469 58304534 -62952996 + RMER21B LTR ERV1 775 835 -112 4 1029 186 194 29 15 chr12 58304784 58304852 -62952678 + CT-rich Low_complexity Low_complexity 3 71 0 4 1029 299 198 96 24 chr12 58304860 58304943 -62952587 + MLT1B LTR MaLR 197 285 -105 4 1029 208 309 138 0 chr12 58305172 58305266 -62952264 - L2 LINE L2 -529 2890 2784 4 1029 386 329 20 40 chr12 58305513 58305662 -62951868 + MER20 DNA MER1_type 1 146 -73 4 1029 417 170 0 0 chr12 58305665 58305777 -62951753 + T-rich Low_complexity Low_complexity 3 114 0 4 1029 1267 61 0 0 chr12 58305779 58305926 -62951604 - B1_Mus1 SINE Alu 0 148 2 4 1029 198 0 0 0 chr12 58305926 58305948 -62951582 + (TAA)n Simple_repeat Simple_repeat 1 22 0 4 1029 1171 126 0 0 chr12 58305969 58306136 -62951394 + B2_Mm2 SINE B2 3 169 -26 4 1029 23 0 0 0 chr12 58306250 58306273 -62951257 + AT_rich Low_complexity Low_complexity 1 23 0 4 1029 546 287 57 15 chr12 58306279 58306517 -62951013 - L1_Rod LINE L1 -1774 4106 3851 4 1029 235 319 69 23 chr12 58306515 58306748 -62950782 - L1M2 LINE L1 -3900 2688 2390 4 1029 2643 30 36 0 chr12 58306763 58307066 -62950464 + L1Md_F3 LINE L1 6257 6570 -14 4 1029 248 239 15 0 chr12 58307134 58307201 -62950329 - L1MA8 LINE L1 -181 6110 6043 4 1029 915 339 96 16 chr12 58307212 58307641 -62949889 - LTR40a LTR ERVL -52 467 5 4 1029 1545 128 87 116 chr12 58307706 58307950 -62949580 + RMER17C LTR ERVK 1 225 -185 4 1029 1228 75 0 0 chr12 58307950 58308097 -62949433 - B1_Mus2 SINE Alu 0 147 1 4 1029 1545 128 87 116 chr12 58308097 58308140 -62949390 + RMER17C LTR ERVK 226 262 -148 4 1029 522 31 0 0 chr12 58308140 58308204 -62949326 + (CTATA)n Simple_repeat Simple_repeat 1 64 0 4 1029 1545 128 87 116 chr12 58308204 58308329 -62949201 + RMER17C LTR ERVK 263 401 -9 4 1029 486 299 50 96 chr12 58308384 58308696 -62948834 + MTE2a LTR MaLR 30 286 -93 4 1029 954 117 77 82 chr12 58308696 58308892 -62948638 - B2_Mm2 SINE B2 0 195 1 4 1029 486 299 48 129 chr12 58308892 58308987 -62948543 + MTE2a LTR MaLR 287 379 0 4 1029 1077 316 17 7 chr12 58308996 58309283 -62948247 - B4A SINE B4 -2 290 1 4 1029 465 215 98 8 chr12 58309887 58310009 -62947521 + L1MB5 LINE L1 5887 6019 -155 4 1029 877 153 8 103 chr12 58310035 58310133 -62947397 - RMER17C LTR ERVK -89 321 227 4 1029 306 0 0 0 chr12 58310133 58310167 -62947363 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1029 877 155 8 102 chr12 58310167 58310332 -62947198 - RMER17C LTR ERVK -165 245 85 4 1029 1263 48 0 7 chr12 58310332 58310478 -62947052 + B1_Mm SINE Alu 3 147 0 5 1029 579 302 12 24 chr12 58310478 58310620 -62946910 - RMER17C LTR ERVK -267 143 2 4 1029 3682 130 126 30 chr12 58310621 58311213 -62946317 - RMER17C-int LTR ERVK -1 3237 2601 4 1029 1441 55 55 6 chr12 58311213 58311396 -62946134 - B2_Mm1t SINE B2 -1 192 1 5 1029 3682 130 126 30 chr12 58311396 58311447 -62946083 - RMER17C-int LTR ERVK -638 2600 2532 4 1029 1205 127 24 5 chr12 58311430 58311635 -62945895 - RMER17C-int LTR ERVK -874 2364 2156 4 1029 2402 157 105 33 chr12 58311653 58312166 -62945364 - RMER17C-int LTR ERVK -1204 2034 1485 4 1029 265 93 93 0 chr12 58312195 58312238 -62945292 - RMER17C-int LTR ERVK -1894 1344 1298 4 1029 240 43 65 0 chr12 58312894 58312940 -62944590 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1029 423 0 0 0 chr12 58313342 58313389 -62944141 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 5 1029 386 0 0 39 chr12 58313415 58313466 -62944064 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1029 1225 50 0 0 chr12 58313471 58313612 -62943918 - B1_Mus1 SINE Alu -7 141 1 5 1029 1351 169 37 15 chr12 58313612 58313810 -62943720 - RMER17C LTR ERVK -26 384 183 5 1029 568 0 14 14 chr12 58313810 58313883 -62943647 + (GAGAA)n Simple_repeat Simple_repeat 1 73 0 5 1029 1351 169 37 15 chr12 58313883 58314008 -62943522 - RMER17C LTR ERVK -228 182 56 5 1029 289 297 150 124 chr12 58314097 58314524 -62943006 - MER65D LTR ERV1 -26 447 10 5 1029 442 232 11 0 chr12 58314526 58314621 -62942909 + L1MB5 LINE L1 6041 6136 -38 4 1029 1199 95 0 0 chr12 58314626 58314774 -62942756 + B1_Mus1 SINE Alu 1 148 0 5 1029 1014 120 0 17 chr12 58314783 58314961 -62942569 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 5 1029 183 129 0 0 chr12 58315206 58315237 -62942293 + (TAGG)n Simple_repeat Simple_repeat 1 31 0 5 1029 402 21 0 0 chr12 58315237 58315284 -62942246 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1029 446 0 0 18 chr12 58315284 58315338 -62942192 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1029 440 287 39 0 chr12 58315554 58315683 -62941847 - Lx8 LINE L1 -294 7179 7046 5 1029 1344 188 119 100 chr12 58315684 58315888 -62941642 - ORR1B2 LTR MaLR 0 367 147 5 1029 3217 45 39 8 chr12 58315888 58316272 -62941258 - MTA_Mm LTR MaLR 0 396 1 5 1029 1344 188 119 100 chr12 58316272 58316295 -62941235 - ORR1B2 LTR MaLR -221 146 140 5 1029 1278 55 0 0 chr12 58316295 58316441 -62941089 - B1_Mus2 SINE Alu 0 147 2 5 1029 1344 188 119 100 chr12 58316441 58316572 -62940958 - ORR1B2 LTR MaLR -228 139 1 5 1029 1346 265 71 42 chr12 58316573 58316982 -62940548 - Lx8 LINE L1 -425 7048 6628 5 1029 1022 274 132 21 chr12 58316983 58317308 -62940222 + ORR1D2 LTR MaLR 1 361 -9 5 1029 909 265 144 0 chr12 58317314 58317578 -62939952 - Lx8 LINE L1 -843 6630 6329 5 1029 1307 183 112 0 chr12 58317582 58317833 -62939697 - RLTR13D6 LTR ERVK -623 279 1 5 1029 1383 277 35 21 chr12 58317834 58318300 -62939230 - L1_Mur3 LINE L1 -539 5341 4865 5 1029 1807 161 185 49 chr12 58318300 58318706 -62938824 - RMER6B LTR ERVK 0 461 1 5 1029 1383 277 35 21 chr12 58318706 58318752 -62938778 - L1_Mur3 LINE L1 -1016 4864 4822 5 1029 377 119 15 31 chr12 58318753 58318825 -62938705 - MTD LTR MaLR -12 407 286 5 1029 588 278 190 24 chr12 58319521 58319787 -62937743 - MTD LTR MaLR -82 318 10 5 1029 1042 266 42 55 chr12 58319795 58319919 -62937611 - L1_Mur3 LINE L1 -1070 4810 4687 5 1029 3265 83 49 25 chr12 58319919 58320390 -62937140 + RLTR45 LTR ERVK 1 482 0 5 1029 1042 266 42 55 chr12 58320390 58320434 -62937096 - L1_Mur3 LINE L1 -1194 4686 4647 5 1029 1153 256 142 128 chr12 58320434 58320795 -62936735 - RLTR19 LTR ERVK 0 499 180 5 1029 1252 68 0 7 chr12 58320795 58320944 -62936586 - B1_Mus1 SINE Alu 0 148 1 5 1029 1153 256 142 128 chr12 58320944 58321074 -62936456 - RLTR19 LTR ERVK -320 179 1 5 1029 1042 266 42 55 chr12 58321074 58321398 -62936132 - L1_Mur3 LINE L1 -1234 4646 4323 5 1029 234 174 0 0 chr12 58321398 58321444 -62936086 + T-rich Low_complexity Low_complexity 1 46 0 5 1029 1161 96 0 14 chr12 58321447 58321595 -62935935 - B1_Mus1 SINE Alu 0 148 3 5 1029 339 25 0 0 chr12 58321604 58321644 -62935886 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1029 230 164 36 18 chr12 58321657 58321713 -62935817 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 5 1029 405 359 87 73 chr12 58321790 58322530 -62935000 + L2 LINE L2 1995 2744 -675 5 1029 564 236 57 7 chr12 58322806 58322947 -62934583 + L1MD LINE L1 5646 5793 -2202 5 1029 561 254 81 84 chr12 58322949 58323316 -62934214 + RLTR12B LTR ERVK 1 297 -231 5 1029 1667 37 0 16 chr12 58323316 58323509 -62934021 - B2_Mm1a SINE B2 0 193 4 5 1029 514 258 71 59 chr12 58323509 58323554 -62933976 + RLTR12B LTR ERVK 247 291 -68 5 1029 228 132 0 0 chr12 58323631 58323669 -62933861 + L1MC3 LINE L1 5817 5854 -479 5 1029 615 239 20 6 chr12 58323671 58323816 -62933714 + ID_B1 SINE B4 84 232 -60 5 1029 624 262 46 46 chr12 58323835 58324075 -62933455 + L1MC3 LINE L1 5853 6092 -1693 5 1029 1914 167 55 52 chr12 58324160 58324527 -62933003 - ORR1C1 LTR MaLR -8 370 3 5 1029 24 0 0 29 chr12 58324548 58324566 -62932964 + AT_rich Low_complexity Low_complexity 1 18 0 5 1029 1227 75 0 0 chr12 58324566 58324712 -62932818 + B1_Mm SINE Alu 2 147 0 5 1029 24 0 0 29 chr12 58324712 58324728 -62932802 + AT_rich Low_complexity Low_complexity 1 16 0 5 1029 331 158 9 0 chr12 58324741 58324805 -62932725 - B2_Mm2 SINE B2 -102 114 47 5 1029 1354 107 11 0 chr12 58324852 58325029 -62932501 - B2_Mm1t SINE B2 -14 179 1 5 1029 265 271 80 73 chr12 58325037 58325117 -62932413 + L1MC3 LINE L1 6178 6252 -92 5 1029 989 193 0 0 chr12 58325117 58325262 -62932268 + B1_Mur4 SINE Alu 1 145 -5 5 1029 201 74 0 0 chr12 58325262 58325289 -62932241 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 5 1029 265 271 80 73 chr12 58325289 58325358 -62932172 + L1MC3 LINE L1 6253 6328 -16 5 1029 420 241 64 9 chr12 58325359 58325468 -62932062 + PB1D10 SINE Alu 1 115 -2 5 1029 529 272 122 0 chr12 58325470 58325683 -62931847 - Lx9 LINE L1 -637 7007 6769 5 1029 181 274 16 31 chr12 58325684 58325748 -62931782 - L4 LINE RTE -786 1243 1181 5 1029 26 30 0 0 chr12 58325748 58325781 -62931749 + AT_rich Low_complexity Low_complexity 1 33 0 5 1029 441 0 0 0 chr12 58325782 58325831 -62931699 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1029 1174 78 0 0 chr12 58325847 58325988 -62931542 - B1_Mus2 SINE Alu -6 141 1 5 1029 6242 131 8 38 chr12 58325996 58326980 -62930550 - Lx3B LINE L1 -4 6969 6015 5 128 375 335 62 40 chr12 58327034 58327258 -62930272 - RMER2 LTR ERV1 0 567 339 5 1030 247 309 0 0 chr12 58327487 58327542 -62929988 + ORR1E LTR MaLR 4 58 -301 5 1030 460 204 14 90 chr12 58327560 58327705 -62929825 + RLTR17 LTR ERVK 105 238 -454 5 1030 748 247 62 73 chr12 58327706 58327994 -62929536 + RLTR17 LTR ERVK 346 630 -62 5 1030 570 206 281 14 chr12 58328448 58328665 -62928865 + ORR1E LTR MaLR 76 350 -9 5 1030 225 0 0 0 chr12 58328694 58328719 -62928811 + (C)n Simple_repeat Simple_repeat 1 25 0 5 1030 1046 56 71 0 chr12 58328719 58328845 -62928685 - B1_Mus2 SINE Alu -12 135 1 5 1030 767 255 72 40 chr12 58328847 58329125 -62928405 - Lx5 LINE L1 0 7050 6764 5 1030 1611 274 189 30 chr12 58329125 58329969 -62927561 + MTE-int LTR MaLR 396 1374 -206 5 1030 1138 56 35 0 chr12 58329979 58330122 -62927408 - B1_Mus1 SINE Alu 0 148 1 5 1030 330 258 157 0 chr12 58330154 58330243 -62927287 - PB1D10 SINE Alu -5 112 10 5 1030 21 0 0 0 chr12 58330309 58330330 -62927200 + AT_rich Low_complexity Low_complexity 1 21 0 5 1030 413 252 113 0 chr12 58330490 58330605 -62926925 + ORR1E LTR MaLR 75 202 -157 5 1030 282 262 0 0 chr12 58330750 58330811 -62926719 + L2a LINE L2 3348 3408 -18 5 1030 222 37 0 0 chr12 58331364 58331391 -62926139 + (CCCCG)n Simple_repeat Simple_repeat 5 31 0 5 1030 1279 28 0 7 chr12 58332057 58332202 -62925328 - B1_Mm SINE Alu -2 145 2 5 1030 1203 221 142 14 chr12 58332504 58332848 -62924682 + MTD LTR MaLR 20 407 -12 5 1030 1143 106 19 0 chr12 58332907 58333068 -62924462 - B2_Mm2 SINE B2 -30 165 2 5 1030 24 0 0 0 chr12 58333307 58333331 -62924199 + AT_rich Low_complexity Low_complexity 1 24 0 5 1030 598 230 36 0 chr12 58333523 58333662 -62923868 - B1_Mur3 SINE Alu -5 144 1 5 1030 231 188 0 0 chr12 58334160 58334208 -62923322 + (CATA)n Simple_repeat Simple_repeat 1 48 0 5 1030 506 339 62 26 chr12 58334412 58334506 -62923024 + Tigger5 DNA MER2_type 4 98 -2308 5 1030 1001 102 151 0 chr12 58334506 58334672 -62922858 - B2_Mm2 SINE B2 -4 191 1 5 1030 506 339 62 26 chr12 58334672 58334804 -62922726 + Tigger5 DNA MER2_type 99 238 -2168 5 1030 237 290 224 0 chr12 58334785 58334892 -62922638 + Tigger5 DNA MER2_type 2275 2405 -1 5 1030 905 79 8 0 chr12 58335018 58335144 -62922386 - B1_Mm SINE Alu 0 147 21 5 1030 1529 41 0 5 chr12 58335154 58335349 -62922181 - L1Md_F3 LINE L1 0 6584 6391 5 1030 201 39 0 0 chr12 58335530 58335556 -62921974 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 5 1030 721 223 0 0 chr12 58335557 58335696 -62921834 - B1_Mur3 SINE Alu -9 140 2 5 1030 635 187 126 25 chr12 58335816 58335975 -62921555 - B3 SINE B2 -41 175 1 5 1030 1694 142 34 6 chr12 58336288 58336583 -62920947 - ORR1A2 LTR MaLR -57 317 1 5 1030 28 61 0 0 chr12 58336615 58336664 -62920866 + AT_rich Low_complexity Low_complexity 1 49 0 5 1030 650 164 121 0 chr12 58337516 58337632 -62919898 + B1_Mus1 SINE Alu 19 148 0 5 1030 949 149 181 5 chr12 58337654 58337864 -62919666 + Lx3B LINE L1 6709 6970 -3 5 1030 2577 175 142 45 chr12 58337905 58338326 -62919204 - Lx9 LINE L1 -20 7624 7156 5 1030 1110 134 41 0 chr12 58338326 58338498 -62919032 - B2_Mm1a SINE B2 -14 179 1 5 1030 2577 175 142 45 chr12 58338498 58338747 -62918783 - Lx9 LINE L1 -489 7155 6889 5 1030 375 241 63 105 chr12 58338748 58338938 -62918592 + Tigger7 DNA MER2_type 2276 2457 -34 5 1030 383 239 174 50 chr12 58338986 58339268 -62918262 - L1MC LINE L1 -3111 3035 2719 5 1030 299 261 184 27 chr12 58341605 58341790 -62915740 - MER31B LTR ERV1 -48 418 205 5 1030 394 273 82 8 chr12 58341804 58341926 -62915604 - MER31B LTR ERV1 -315 151 21 5 1030 461 341 75 37 chr12 58342070 58342338 -62915192 - B4A SINE B4 -10 282 5 5 1030 25 31 0 0 chr12 58342730 58342762 -62914768 + AT_rich Low_complexity Low_complexity 1 32 0 5 1030 442 317 21 27 chr12 58343602 58343790 -62913740 + Lx8 LINE L1 7193 7379 -94 5 1030 347 239 90 14 chr12 58343928 58344072 -62913458 + L1MA8 LINE L1 5915 6069 -222 5 1030 255 161 97 0 chr12 58344229 58344311 -62913219 + Lx7 LINE L1 5729 5822 -1874 5 1030 200 255 0 18 chr12 58344368 58344424 -62913106 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1030 1554 202 93 65 chr12 58344475 58344500 -62913030 - RMER15 LTR ERVL -111 464 445 5 1030 1445 150 78 180 chr12 58344500 58344938 -62912592 - ORR1B1 LTR MaLR -1 393 1 5 1030 1554 202 93 65 chr12 58344938 58345329 -62912201 - RMER15 LTR ERVL -131 444 36 5 1030 1166 75 0 0 chr12 58345431 58345578 -62911952 - B1_Mus2 SINE Alu 0 147 1 5 1030 205 182 0 0 chr12 58345586 58345619 -62911911 + (TATG)n Simple_repeat Simple_repeat 4 36 0 5 1030 318 130 0 41 chr12 58345619 58345686 -62911844 - B2_Mm2 SINE B2 -107 109 47 5 1030 1094 127 17 0 chr12 58345724 58345897 -62911633 - B2_Mm1t SINE B2 -16 177 2 5 1030 324 290 76 36 chr12 58346000 58346225 -62911305 - L1M5 LINE L1 -2646 3500 3267 5 1030 492 264 93 0 chr12 58346259 58346388 -62911142 - B1_Mur1 SINE Alu -6 143 3 5 1030 21 36 0 0 chr12 58346391 58346419 -62911111 + AT_rich Low_complexity Low_complexity 1 28 0 6 1030 306 303 32 76 chr12 58346709 58346959 -62910571 - L1ME1 LINE L1 -162 6017 5779 6 1030 1096 96 7 0 chr12 58347008 58347154 -62910376 - B1_Mus1 SINE Alu 0 148 2 6 1030 4743 193 32 51 chr12 58347312 58347536 -62909994 - RLTR25B LTR ERVK 0 1028 807 6 1030 261 118 0 0 chr12 58347536 58347587 -62909943 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 6 1030 4743 193 32 51 chr12 58347587 58347769 -62909761 - RLTR25B LTR ERVK -222 806 625 6 1030 180 0 0 0 chr12 58347769 58347789 -62909741 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1030 4743 193 32 51 chr12 58347789 58348428 -62909102 - RLTR25B LTR ERVK -404 624 4 6 1030 494 310 20 27 chr12 58348428 58348577 -62908953 - B3 SINE B2 -56 160 13 6 1030 1511 22 38 0 chr12 58348627 58348812 -62908718 + B2_Mm2 SINE B2 2 193 -2 6 1030 6618 223 56 31 chr12 58348812 58350338 -62907192 - Lx6 LINE L1 -18 7442 5879 6 1030 3732 149 63 19 chr12 58350337 58350819 -62906711 - L1_Mur3 LINE L1 -81 5799 5302 6 1030 2294 110 3 0 chr12 58350819 58351145 -62906385 - ORR1A2 LTR MaLR 0 327 1 6 1030 7619 176 62 50 chr12 58351145 58352916 -62904614 - ORR1A2-int LTR MaLR 0 1792 1 6 1030 2343 104 3 0 chr12 58352916 58353242 -62904288 - ORR1A2 LTR MaLR 0 327 1 6 1030 3732 149 63 19 chr12 58353242 58353484 -62904046 - L1_Mur3 LINE L1 -579 5301 5043 6 1030 7546 163 92 32 chr12 58353491 58355246 -62902284 - L1_Mur3 LINE L1 -1562 4318 2460 6 1030 777 260 117 5 chr12 58355264 58355469 -62902061 + Lx9 LINE L1 6337 6564 -1080 6 1030 1425 124 80 25 chr12 58355479 58355718 -62901812 - RLTR14 LTR ERV1 -121 261 10 6 1030 207 0 0 0 chr12 58356555 58356578 -62900952 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1030 1518 28 39 0 chr12 58357237 58357416 -62900114 + B2_Mm2 SINE B2 2 187 -8 6 1030 820 288 102 75 chr12 58357899 58358234 -62899296 - L1MA4A LINE L1 0 6300 5966 6 1030 1232 48 0 0 chr12 58358234 58358381 -62899149 - B1_Mm SINE Alu 0 147 1 6 1030 869 268 91 59 chr12 58358381 58358634 -62898896 - L1MA4A LINE L1 -335 5965 5703 6 1030 685 74 16 8 chr12 58358634 58358757 -62898773 + L1_Mus3 LINE L1 6512 6635 -3 6 1030 869 266 90 57 chr12 58358757 58359047 -62898483 - L1MA4A LINE L1 -601 5702 5399 6 1030 1093 271 21 29 chr12 58359345 58359626 -62897904 - B4 SINE B4 -2 290 12 6 1030 388 318 118 11 chr12 58359610 58359788 -62897742 - MER119 DNA MER1_type -318 265 69 6 1030 315 283 104 0 chr12 58359994 58360100 -62897430 - L1MB4 LINE L1 -6151 456 340 6 1030 285 169 0 0 chr12 58360279 58360338 -62897192 + CT-rich Low_complexity Low_complexity 3 61 0 6 1030 479 215 0 8 chr12 58360415 58360537 -62896993 + (TA)n Simple_repeat Simple_repeat 2 122 0 6 1030 1523 43 16 0 chr12 58360590 58360774 -62896756 + B2_Mm1t SINE B2 2 188 -5 6 1030 2433 276 118 24 chr12 58360775 58361627 -62895903 - Lx7 LINE L1 -383 7313 6381 6 1030 15667 31 3 12 chr12 58361564 58363499 -62894031 + L1Md_F2 LINE L1 3670 5586 -297 6 1030 8059 46 1 2 chr12 58363499 58364496 -62893034 + L1Md_F2 LINE L1 5587 6582 0 6 1030 335 164 16 47 chr12 58364498 58364562 -62892968 - Lx7 LINE L1 -1301 6395 6334 6 1030 200 79 0 50 chr12 58364619 58364659 -62892871 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 6 1030 1053 102 0 13 chr12 58364659 58364808 -62892722 - B1_Mm SINE Alu 0 147 1 6 1030 2969 229 97 12 chr12 58364815 58366008 -62891522 - Lx7 LINE L1 -1190 6283 4968 6 1030 348 94 0 0 chr12 58366254 58366307 -62891223 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1030 1278 179 89 8 chr12 58366317 58366576 -62890954 - Lx5 LINE L1 -1 7049 6770 6 1030 668 124 18 0 chr12 58366599 58366712 -62890818 + (TATG)n Simple_repeat Simple_repeat 2 116 0 6 1030 316 53 0 0 chr12 58366713 58366751 -62890779 - HAL1-3A_ME LINE L1 -846 2012 1975 6 1030 280 190 12 12 chr12 58367215 58367295 -62890235 + CT-rich Low_complexity Low_complexity 2 81 0 6 1030 402 172 0 0 chr12 58367545 58367609 -62889921 + Lx5 LINE L1 6599 6662 -388 6 1030 423 0 0 0 chr12 58367610 58367657 -62889873 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 6 1030 780 11 0 0 chr12 58367657 58367746 -62889784 + (GGAAA)n Simple_repeat Simple_repeat 3 91 0 6 1030 1179 41 0 7 chr12 58368014 58368161 -62889369 - B1_Mm SINE Alu -1 146 1 6 1030 272 290 70 0 chr12 58368163 58368263 -62889267 - ORR1E LTR MaLR -249 110 4 6 1030 4874 60 24 8 chr12 58368978 58369636 -62887894 - L1Md_F2 LINE L1 -3 6579 5911 6 1030 1892 169 78 14 chr12 58369848 58370208 -62887322 + ORR1C2 LTR MaLR 1 383 -1 6 1030 2250 139 17 0 chr12 58370688 58371032 -62886498 + Lx4A LINE L1 6627 6976 -82 6 1030 1350 67 0 0 chr12 58371115 58371293 -62886237 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 6 1030 378 0 0 0 chr12 58371295 58371337 -62886193 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 6 1030 992 68 20 7 chr12 58371341 58371490 -62886040 - L1_Mus3 LINE L1 -12 6626 6476 6 1030 510 183 0 0 chr12 58371491 58371584 -62885946 - L1M2 LINE L1 -2395 3748 3656 6 1030 7929 84 14 10 chr12 58371586 58372156 -62885374 - MusHAL1 LINE L1 -282 2430 1848 6 1030 1726 61 4 13 chr12 58372156 58372387 -62885143 - L1_Mus1 LINE L1 0 6567 6339 6 1030 7929 84 14 10 chr12 58372387 58372997 -62884533 - MusHAL1 LINE L1 -865 1847 1246 6 1030 726 103 0 0 chr12 58374288 58374385 -62883145 - Lx3A LINE L1 -295 6686 6590 6 1030 266 301 158 51 chr12 58374729 58374917 -62882613 + Lx8 LINE L1 7135 7344 -129 6 1030 3974 38 0 0 chr12 58374917 58375394 -62882136 + L1Md_F2 LINE L1 6104 6580 -2 6 1030 722 160 98 23 chr12 58375582 58375755 -62881775 - B2_Mm2 SINE B2 -9 186 1 6 1030 21 0 0 0 chr12 58376861 58376882 -62880648 + AT_rich Low_complexity Low_complexity 1 21 0 6 1030 922 256 192 27 chr12 58377110 58377516 -62880014 - MLT2B4 LTR ERVL -68 488 16 6 1030 254 286 71 0 chr12 58377778 58377862 -62879668 + B1_Mur2 SINE Alu 21 110 -39 6 1030 29 0 0 0 chr12 58378191 58378220 -62879310 + AT_rich Low_complexity Low_complexity 1 29 0 6 1030 26 0 0 0 chr12 58378390 58378416 -62879114 + AT_rich Low_complexity Low_complexity 1 26 0 6 1030 272 404 77 0 chr12 58379013 58379196 -62878334 - L2a LINE L2 -252 3174 2978 6 1030 200 100 25 0 chr12 58379789 58379829 -62877701 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1030 852 216 51 5 chr12 58379908 58380103 -62877427 + B3 SINE B2 1 204 -12 6 1030 720 271 12 17 chr12 58381953 58382134 -62875396 + B3A SINE B2 4 183 -15 6 1030 321 302 129 57 chr12 58384064 58384257 -62873273 + HAL1-3A_ME LINE L1 1975 2181 -677 6 1030 325 67 50 0 chr12 58384806 58384866 -62872664 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 6 1030 310 269 16 16 chr12 58386009 58386120 -62871410 - Lx9 LINE L1 -15 7629 7518 6 1030 188 86 29 0 chr12 58386120 58386155 -62871375 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1030 454 289 168 50 chr12 58386304 58386566 -62870964 + MER2 DNA MER2_type 31 323 -22 6 1030 261 333 25 38 chr12 58387465 58387624 -62869906 - YREP_Mm Unknown Unknown -1474 338 182 6 1030 643 297 24 13 chr12 58387481 58387661 -62869869 + ID_B1 SINE B4 81 265 -27 6 1030 23 0 0 0 chr12 58388113 58388136 -62869394 + AT_rich Low_complexity Low_complexity 1 23 0 6 1030 243 24 49 0 chr12 58388476 58388517 -62869013 + B1_Mus2 SINE Alu 105 147 0 6 1030 1144 176 67 0 chr12 58389183 58389393 -62868137 + URR1A DNA MER1_type 1 224 -2 6 1030 292 318 39 0 chr12 58389694 58389823 -62867707 - L1MC1 LINE L1 -31 6302 6169 6 1030 252 0 0 0 chr12 58390905 58390933 -62866597 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1030 209 200 0 0 chr12 58392149 58392184 -62865346 + T-rich Low_complexity Low_complexity 2 36 0 6 1030 183 220 0 0 chr12 58394742 58394792 -62862738 + T-rich Low_complexity Low_complexity 1 50 0 6 1030 3764 79 160 28 chr12 58394801 58395414 -62862116 - Lx LINE L1 0 6654 5961 6 1030 242 283 102 61 chr12 58395520 58395618 -62861912 - B1F1 SINE Alu -41 106 5 6 1030 5193 47 10 64 chr12 58396212 58396803 -62860727 - L1_Mus1 LINE L1 -297 6270 5718 6 1030 1214 61 0 0 chr12 58396803 58396950 -62860580 - B1_Mus1 SINE Alu -1 147 1 6 1030 5193 68 7 78 chr12 58396950 58397142 -62860388 - L1_Mus1 LINE L1 -166 5717 5526 6 1030 24 32 0 0 chr12 58397203 58397234 -62860296 + AT_rich Low_complexity Low_complexity 1 31 0 6 1030 295 329 13 0 chr12 58397471 58397550 -62859980 + PB1D10 SINE Alu 1 80 -37 6 1030 216 0 0 0 chr12 58397551 58397575 -62859955 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 6 1030 705 351 14 4 chr12 58397614 58397891 -62859639 - B4A SINE B4 -11 281 2 6 1030 180 77 0 0 chr12 58398699 58398725 -62858805 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1030 487 160 47 0 chr12 58398729 58398835 -62858695 + Lx9 LINE L1 7527 7637 -7 6 1030 437 312 29 0 chr12 58400337 58400475 -62857055 - B1F1 SINE Alu -7 142 1 6 1030 359 145 14 0 chr12 58400492 58400561 -62856969 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 1030 1216 220 170 18 chr12 58400724 58401066 -62856464 - Lx9 LINE L1 -152 7492 7099 6 1030 274 235 45 66 chr12 58401818 58401918 -62855612 - PB1D7 SINE Alu -2 147 42 6 1030 670 221 26 105 chr12 58401971 58402199 -62855331 + B3 SINE B2 1 210 -6 6 1030 220 254 68 0 chr12 58403826 58403885 -62853645 - MER5A DNA MER1_type -49 140 78 6 1030 1134 147 37 0 chr12 58403963 58404153 -62853377 + URR1A DNA MER1_type 30 226 0 6 1030 21 36 0 0 chr12 58404740 58404768 -62852762 + AT_rich Low_complexity Low_complexity 1 28 0 6 1030 1065 145 0 0 chr12 58405639 58405818 -62851712 + (TC)n Simple_repeat Simple_repeat 2 180 0 6 1030 4441 115 50 7 chr12 58405857 58406555 -62850975 - Lx2 LINE L1 -2 6995 6268 6 1030 504 0 0 0 chr12 58409280 58409336 -62848194 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1030 1707 88 127 4 chr12 58410080 58410355 -62847175 + Lx3_Mus LINE L1 6701 7009 0 6 1030 1065 56 0 21 chr12 58410915 58411060 -62846470 + B1_Mus2 SINE Alu 1 142 -5 6 1030 197 65 32 0 chr12 58412725 58412756 -62844774 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1030 232 238 151 84 chr12 58412786 58412965 -62844565 - RMER12B LTR ERVK -1088 316 126 6 1030 287 246 168 42 chr12 58412966 58413085 -62844445 + B1_Mm SINE Alu 6 139 -8 6 1030 432 0 63 0 chr12 58414006 58414069 -62843461 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 7 1030 778 80 30 24 chr12 58414513 58414679 -62842851 + (TCTA)n Simple_repeat Simple_repeat 2 168 0 7 1030 45 19 0 0 chr12 58414910 58414962 -62842568 + AT_rich Low_complexity Low_complexity 1 52 0 7 1030 5766 81 41 16 chr12 58414978 58415816 -62841714 - Lx3_Mus LINE L1 0 7009 6151 7 1030 4519 92 9 24 chr12 58415816 58416689 -62840841 + Lx3_Mus LINE L1 5246 6107 -902 7 1030 3097 75 81 2 chr12 58416689 58417131 -62840399 - Lx3_Mus LINE L1 -7 7002 6526 7 1030 777 235 92 41 chr12 58418574 58418769 -62838761 - B3 SINE B2 -11 205 1 7 1030 31 58 0 0 chr12 58418849 58418901 -62838629 + AT_rich Low_complexity Low_complexity 1 52 0 7 1030 884 181 231 0 chr12 58419442 58419624 -62837906 - URR1B DNA MER1_type 0 225 2 7 1030 615 156 76 62 chr12 58419629 58419773 -62837757 + Lx4A LINE L1 6913 7058 0 7 1030 4074 206 79 11 chr12 58419797 58421703 -62835827 + MERVL_2A-int LTR ERVL 1467 3565 -2196 7 1030 9604 202 48 17 chr12 58421707 58423721 -62833809 + MERVL_2A-int LTR ERVL 3685 5761 0 7 1030 1271 208 47 45 chr12 58423721 58424127 -62833403 + MT2A LTR ERVL 1 413 -120 7 1030 1918 173 86 8 chr12 58424151 58424535 -62832995 + Lx4A LINE L1 6643 7056 -2 7 1030 185 35 69 0 chr12 58424552 58424581 -62832949 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 7 1030 415 290 105 28 chr12 58424649 58424830 -62832700 - L1MEf LINE L1 -4526 1674 1480 7 1030 1371 189 116 14 chr12 58424835 58425190 -62832340 - Lx9 LINE L1 -399 7245 6855 7 1030 1419 60 22 0 chr12 58425288 58425470 -62832060 - B2_Mm2 SINE B2 -8 187 2 7 1030 1251 27 0 0 chr12 58426319 58426465 -62831065 - B1_Mm SINE Alu -1 146 1 7 1030 597 199 157 7 chr12 58426689 58426836 -62830694 - MT2B LTR ERVL -339 262 94 7 1030 4114 154 52 16 chr12 58426720 58427492 -62830038 - ORR1A4-int LTR MaLR -1163 800 1 7 1030 1885 154 12 12 chr12 58427492 58427821 -62829709 - ORR1A4 LTR MaLR 0 329 1 7 1030 335 301 71 0 chr12 58427821 58427895 -62829635 - ORR1E-int LTR MaLR -677 903 823 7 1030 500 268 8 23 chr12 58427949 58428079 -62829451 + B1_Mur1 SINE Alu 3 130 -19 7 1030 1567 335 37 32 chr12 58428152 58428771 -62828759 - ORR1E-int LTR MaLR -958 622 1 7 1030 455 326 98 63 chr12 58428773 58429120 -62828410 - ORR1E LTR MaLR 0 359 1 7 1030 321 283 104 31 chr12 58429482 58429741 -62827789 - L1MD LINE L1 -1264 4882 4605 7 1030 24 0 0 0 chr12 58433216 58433240 -62824290 + AT_rich Low_complexity Low_complexity 1 24 0 7 1030 324 0 0 0 chr12 58433594 58433630 -62823900 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1030 1986 54 31 4 chr12 58434013 58434273 -62823257 - L1Md_F3 LINE L1 0 6584 6318 7 1030 240 59 0 0 chr12 58434715 58434749 -62822781 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1030 324 70 0 0 chr12 58435050 58435093 -62822437 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1030 401 297 53 27 chr12 58435196 58435383 -62822147 - Lx8 LINE L1 -286 7187 6996 7 1030 298 141 109 0 chr12 58435391 58435455 -62822075 - Lx5 LINE L1 -3 7047 6977 7 1030 912 226 0 5 chr12 58435456 58435647 -62821883 - Lx7 LINE L1 -647 7049 6860 7 1030 402 87 32 32 chr12 58435663 58435758 -62821772 - Lx3_Mus LINE L1 0 7009 6915 7 1030 669 45 0 0 chr12 58435758 58435846 -62821684 - Lx3_Mus LINE L1 -1005 6004 5917 7 1030 201 24 98 0 chr12 58435852 58435893 -62821637 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1030 3211 83 16 4 chr12 58435894 58436372 -62821158 - Lx3_Mus LINE L1 -1067 5942 5464 7 1030 230 56 0 27 chr12 58436381 58436418 -62821112 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1030 1125 68 0 20 chr12 58436425 58436574 -62820956 - B1_Mus2 SINE Alu 0 147 2 7 1030 5111 81 24 12 chr12 58436587 58437328 -62820202 + L1_Mur1 LINE L1 4770 5519 -367 7 1030 3518 242 74 43 chr12 58437317 58437595 -62819935 - Lx7 LINE L1 -813 6883 6573 7 1030 2324 212 42 86 chr12 58437595 58438234 -62819296 - RMER19C LTR ERVK 0 611 1 7 1030 3518 242 74 43 chr12 58438234 58439029 -62818501 - Lx7 LINE L1 -1124 6572 5777 7 1030 918 135 90 0 chr12 58439131 58439287 -62818243 - Lx4B LINE L1 -120 6938 6769 7 1030 279 0 0 0 chr12 58439303 58439334 -62818196 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1030 1287 156 9 9 chr12 58439364 58439590 -62817940 - Lx4B LINE L1 -303 6755 6530 7 1030 3559 128 11 0 chr12 58439585 58440311 -62817219 - Lx4B LINE L1 -979 6079 5339 7 1030 1969 104 19 9 chr12 58440302 58440623 -62816907 - L1_Mur2 LINE L1 -3825 2052 1729 7 1030 216 0 0 0 chr12 58440632 58440656 -62816874 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1030 2938 96 45 43 chr12 58440730 58441197 -62816333 - L1_Mus3 LINE L1 0 6638 6171 7 1030 1086 150 0 88 chr12 58441198 58441403 -62816127 - B2_Mm2 SINE B2 -7 188 2 7 1030 4400 131 29 102 chr12 58441405 58442666 -62814864 - L1_Mur2 LINE L1 -4162 1715 545 7 1030 1703 201 33 6 chr12 58442673 58443066 -62814464 - Lx7 LINE L1 -1895 5801 5396 7 1030 265 278 0 0 chr12 58443139 58443211 -62814319 + RMER1C Other Other 1259 1330 -12 7 1030 378 234 129 3 chr12 58443220 58443424 -62814106 - L1MD3 LINE L1 -142 7853 7671 7 1030 3247 38 0 17 chr12 58444502 58444905 -62812625 + L1Md_F2 LINE L1 6186 6581 -1 7 1030 2252 208 97 14 chr12 58444905 58445020 -62812510 - Lx6 LINE L1 -221 7239 7119 7 1030 368 20 20 0 chr12 58445020 58445069 -62812461 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1030 2252 208 97 14 chr12 58445069 58445408 -62812122 - Lx6 LINE L1 -342 7118 6753 7 1030 234 0 0 0 chr12 58445408 58445434 -62812096 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1030 2252 208 97 14 chr12 58445434 58445486 -62812044 - Lx6 LINE L1 -708 6752 6693 7 1030 652 169 99 37 chr12 58447930 58448121 -62809409 + Lx2A1 LINE L1 6806 7008 0 7 1030 26 0 0 0 chr12 58448121 58448147 -62809383 + AT_rich Low_complexity Low_complexity 1 26 0 7 1030 27 73 0 0 chr12 58448783 58448838 -62808692 + AT_rich Low_complexity Low_complexity 1 55 0 7 1030 228 320 100 62 chr12 58448958 58449218 -62808312 - L1ME1 LINE L1 -264 6180 5911 7 1030 498 276 127 26 chr12 58449255 58449770 -62807760 - L1ME1 LINE L1 -351 5828 5259 7 1030 26 30 0 0 chr12 58449821 58449854 -62807676 + AT_rich Low_complexity Low_complexity 1 33 0 7 1030 608 296 30 0 chr12 58449877 58450080 -62807450 - B3 SINE B2 -3 213 5 7 1030 366 328 144 39 chr12 58450201 58450617 -62806913 - L1ME1 LINE L1 -1126 5020 4561 7 1030 957 248 53 15 chr12 58450628 58450890 -62806640 - ERVL-B4-int LTR ERVL -1153 4561 4290 7 1030 1330 308 129 22 chr12 58451067 58451507 -62806023 - Lx7 LINE L1 -396 7300 6810 7 1030 735 79 23 23 chr12 58451507 58451637 -62805893 - L1Md_F2 LINE L1 -1 6581 6452 7 1030 1330 308 129 22 chr12 58451637 58451833 -62805697 - Lx7 LINE L1 -887 6809 6596 7 1030 588 332 23 18 chr12 58451825 58452046 -62805484 - Lx8 LINE L1 -796 6677 6456 7 1030 364 308 131 40 chr12 58452532 58452830 -62804700 - Lx8 LINE L1 -9 7464 7140 7 1030 1498 110 40 32 chr12 58452879 58453132 -62804398 - Lx LINE L1 -7 6647 6393 7 1030 24 32 0 0 chr12 58454282 58454313 -62803217 + AT_rich Low_complexity Low_complexity 1 31 0 7 1030 306 0 0 0 chr12 58454416 58454450 -62803080 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1030 214 188 24 24 chr12 58454523 58454605 -62802925 + (TA)n Simple_repeat Simple_repeat 2 83 0 7 1030 1108 284 69 33 chr12 58454686 58455018 -62802512 - Lx8 LINE L1 -142 7331 6988 7 1030 186 143 0 0 chr12 58455385 58455420 -62802110 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1030 1566 201 26 43 chr12 58455546 58455937 -62801593 - ORR1C2 LTR MaLR 0 384 1 7 1030 4540 200 184 8 chr12 58455937 58457061 -62800469 - ORR1C2-int LTR MaLR 0 1509 188 7 1030 2603 28 61 0 chr12 58457064 58457390 -62800140 - ORR1A1 LTR MaLR 0 346 1 7 1030 721 298 20 5 chr12 58457390 58457578 -62799952 - ORR1C2-int LTR MaLR -1179 191 1 7 1030 1785 162 67 72 chr12 58457578 58457964 -62799566 - ORR1C2 LTR MaLR 0 384 1 7 128 1975 75 76 69 chr12 58458037 58458354 -62799176 - ORR1A2 LTR MaLR -8 319 1 7 1031 1841 153 116 8 chr12 58458873 58459228 -62798302 + ORR1B1 LTR MaLR 2 394 0 7 1031 220 333 111 26 chr12 58459428 58459545 -62797985 + PB1 SINE Alu 1 127 0 7 1031 672 304 66 44 chr12 58459664 58459981 -62797549 - ORR1E LTR MaLR 0 359 36 7 1031 234 0 0 0 chr12 58459985 58460011 -62797519 + (TC)n Simple_repeat Simple_repeat 1 26 0 7 1031 3240 256 58 96 chr12 58460099 58461255 -62796275 - Lx5 LINE L1 0 7050 5939 7 1031 399 327 181 28 chr12 58461626 58462019 -62795511 + L2a LINE L2 2969 3421 -5 7 1031 1004 226 174 51 chr12 58462774 58462913 -62794617 - Lx9 LINE L1 -9 7635 7474 7 1031 438 53 0 0 chr12 58462913 58462970 -62794560 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1031 1004 226 174 51 chr12 58462970 58463221 -62794309 - Lx9 LINE L1 -171 7473 7198 7 1031 341 262 146 82 chr12 58463928 58464086 -62793444 - B4A SINE B4 -122 170 3 7 1031 25 0 0 0 chr12 58465570 58465595 -62791935 + AT_rich Low_complexity Low_complexity 1 25 0 7 1031 272 419 20 20 chr12 58466050 58466201 -62791329 + B4A SINE B4 1 151 -141 7 1031 398 318 6 6 chr12 58466501 58466672 -62790858 + (CA)n Simple_repeat Simple_repeat 2 172 0 7 1031 344 40 20 0 chr12 58466738 58466788 -62790742 + (TTA)n Simple_repeat Simple_repeat 2 52 0 7 1031 21 0 0 0 chr12 58467634 58467655 -62789875 + AT_rich Low_complexity Low_complexity 1 21 0 7 1031 497 253 50 11 chr12 58467705 58467885 -62789645 - B3A SINE B2 -10 188 2 7 1031 2133 315 52 28 chr12 58468501 58469474 -62788056 - Lx8 LINE L1 -29 7444 6448 7 1031 3907 96 45 3 chr12 58469484 58470311 -62787219 + Lx4A LINE L1 5325 6191 -867 7 1031 941 246 52 109 chr12 58470305 58470480 -62787050 + Lx7 LINE L1 7247 7402 -294 7 1031 333 62 0 0 chr12 58470480 58470528 -62787002 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 7 1031 941 246 52 109 chr12 58470528 58470809 -62786721 + Lx7 LINE L1 7403 7676 -20 7 1031 2198 106 77 11 chr12 58470951 58471315 -62786215 - Lx LINE L1 -11 6643 6256 7 1031 1181 294 73 73 chr12 58471371 58472611 -62784919 - L1_Mur3 LINE L1 -11 5866 4668 7 1031 242 248 46 88 chr12 58472612 58472851 -62784679 - L1M2 LINE L1 -2941 3202 2974 7 1031 3775 219 70 45 chr12 58472865 58473110 -62784420 - Lx7 LINE L1 -930 6766 6496 7 1031 3485 134 141 33 chr12 58473110 58473411 -62784119 + RMER17D2 LTR ERVK 1 303 -506 7 1031 842 95 0 8 chr12 58473411 58473538 -62783992 + (TCTCC)n Simple_repeat Simple_repeat 4 129 0 7 1031 3485 134 141 33 chr12 58473538 58473649 -62783881 + RMER17D2 LTR ERVK 304 438 -371 7 1031 285 29 0 0 chr12 58473649 58473683 -62783847 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1031 3485 134 141 33 chr12 58473683 58473999 -62783531 + RMER17D2 LTR ERVK 439 809 0 7 1031 3775 219 70 45 chr12 58473999 58474750 -62782780 - Lx7 LINE L1 -1201 6495 5745 7 1031 1615 217 317 30 chr12 58474750 58475442 -62782088 + RMER19B LTR ERVK 1 890 -12 7 1031 2419 150 93 78 chr12 58475456 58476007 -62781523 - Lx7 LINE L1 -134 5746 5188 7 1031 381 346 36 26 chr12 58476400 58476706 -62780824 + L1MD2 LINE L1 6030 6338 -21 7 1031 250 337 28 47 chr12 58476717 58476823 -62780707 - MLT1F2 LTR MaLR -450 110 7 7 1031 249 409 98 9 chr12 58476943 58477291 -62780239 + L2 LINE L2 2459 2837 -582 7 1031 210 150 0 0 chr12 58477563 58477603 -62779927 + (CATA)n Simple_repeat Simple_repeat 1 40 0 7 1031 185 299 139 0 chr12 58478431 58478568 -62778962 - L2 LINE L2 -1246 2173 2018 7 1031 811 255 41 4 chr12 58478982 58479226 -62778304 + Lx7 LINE L1 7007 7259 -437 7 1031 22 0 0 0 chr12 58480747 58480769 -62776761 + AT_rich Low_complexity Low_complexity 1 22 0 8 1031 25 31 0 0 chr12 58483734 58483766 -62773764 + AT_rich Low_complexity Low_complexity 1 32 0 8 1031 674 231 18 18 chr12 58486025 58486188 -62771342 + RSINE1 SINE B4 3 165 0 8 1031 257 255 38 94 chr12 58486589 58486749 -62770781 + RMER17C LTR ERVK 125 275 -135 8 1031 1073 38 0 0 chr12 58486767 58486900 -62770630 + B1_Mm SINE Alu 14 146 -1 8 1031 405 0 0 0 chr12 58486901 58486946 -62770584 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 1031 496 262 37 122 chr12 58486960 58487053 -62770477 - B4A SINE B4 0 292 221 8 1031 235 0 0 54 chr12 58487053 58487090 -62770440 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1031 496 262 37 122 chr12 58487090 58487266 -62770264 - B4A SINE B4 -72 220 46 8 1031 506 241 139 0 chr12 58487421 58487579 -62769951 + MER2 DNA MER2_type 86 265 -80 8 1031 392 274 136 5 chr12 58487929 58488120 -62769410 + L1M5 LINE L1 2865 3080 -3066 8 1031 273 347 54 70 chr12 58488365 58488678 -62768852 + Lx8 LINE L1 7156 7463 -10 8 1031 6940 95 53 1 chr12 58488928 58490112 -62767418 - L1_Mus4 LINE L1 -2 6634 5390 8 1031 5836 97 21 0 chr12 58490111 58491686 -62765844 - L1VL4 LINE L1 -1870 1689 84 8 1031 248 280 186 63 chr12 58491804 58492025 -62765505 - L2 LINE L2 -990 2429 2182 8 1031 408 264 75 20 chr12 58492107 58492254 -62765276 + RSINE1 SINE B4 11 165 0 8 1031 21 36 0 0 chr12 58492274 58492302 -62765228 + AT_rich Low_complexity Low_complexity 1 28 0 8 1031 829 269 41 0 chr12 58492573 58492770 -62764760 + Lx9 LINE L1 6534 6738 -906 8 1031 1105 153 109 43 chr12 58492773 58492868 -62764662 + URR1A DNA MER1_type 1 117 -109 8 1031 3229 56 2 0 chr12 58492868 58493263 -62764267 + MTA_Mm LTR MaLR 1 396 0 8 1031 8256 62 15 6 chr12 58493263 58494352 -62763178 + MTA_Mm-int LTR MaLR 1 1098 0 8 1031 2840 52 73 0 chr12 58494352 58494721 -62762809 + MTA_Mm LTR MaLR 1 396 0 8 1031 1105 153 109 43 chr12 58494721 58494834 -62762696 + URR1A DNA MER1_type 118 223 -3 8 1031 778 258 30 0 chr12 58494850 58495048 -62762482 + Lx9 LINE L1 6760 6963 -681 8 1031 370 315 14 103 chr12 58495048 58495193 -62762337 + RSINE1 SINE B4 34 165 0 8 1031 611 318 21 57 chr12 58495235 58495518 -62762012 + MLT1C LTR MaLR 190 462 -5 8 1031 3383 124 5 9 chr12 58495742 58496488 -62761042 - Lx LINE L1 -263 6304 5367 8 1031 2020 108 58 40 chr12 58496488 58496834 -62760696 + Lx LINE L1 6303 6654 0 8 1031 3383 142 0 13 chr12 58496834 58496850 -62760680 - Lx LINE L1 -517 5366 5356 8 1031 859 294 27 88 chr12 58496935 58497333 -62760197 - MTE2a LTR MaLR -8 411 30 8 1031 292 261 98 29 chr12 58497940 58498081 -62759449 + MTD LTR MaLR 146 292 -127 8 1031 708 259 229 24 chr12 58498849 58499177 -62758353 + MTC LTR MaLR 13 407 -14 8 1031 21 0 0 0 chr12 58500426 58500447 -62757083 + AT_rich Low_complexity Low_complexity 1 21 0 1 1031 218 214 0 0 chr12 58503975 58504017 -62753513 - ID4_ SINE ID -39 44 3 2 1031 351 0 0 0 chr12 58504044 58504083 -62753447 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1031 1539 75 0 88 chr12 58504177 58504426 -62753104 + L1_Mus2 LINE L1 6336 6562 -4 4 1031 825 107 0 0 chr12 58504489 58504611 -62752919 + (GAAA)n Simple_repeat Simple_repeat 1 122 0 5 1031 297 0 0 0 chr12 58506997 58507030 -62750500 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1031 312 217 141 0 chr12 58507686 58507778 -62749752 + L1MA6 LINE L1 5227 5331 -812 7 1031 3326 71 2 0 chr12 58507892 58508354 -62749176 - L1_Mm LINE L1 -2982 2901 2439 8 1031 681 262 69 22 chr12 58508419 58508696 -62748834 + L1MA6 LINE L1 5634 5923 -377 7 1031 2100 198 72 12 chr12 58508789 58509356 -62748174 - Lx9 LINE L1 -3 7641 7041 9 1031 390 253 156 45 chr12 58509393 58509592 -62747938 + MIR SINE MIR 5 225 -37 1 1031 258 376 56 14 chr12 58510240 58510456 -62747074 - MIR SINE MIR -15 247 23 1 1031 235 273 78 97 chr12 58511110 58511264 -62746266 + MIR3 SINE MIR 57 207 -1 1 1031 590 118 0 0 chr12 58511680 58511773 -62745757 - Lx3_Mus LINE L1 -1070 5939 5847 1 1031 7195 71 60 20 chr12 58511773 58512797 -62744733 + Lx3_Mus LINE L1 5946 7009 0 1 1031 314 184 38 38 chr12 58512797 58512815 -62744715 - Lx6 LINE L1 -1617 5843 5825 1 1031 193 256 23 93 chr12 58513115 58513201 -62744329 + L3 LINE CR1 2746 2825 -1664 1 1031 411 250 60 0 chr12 58513493 58513593 -62743937 + B1F SINE Alu 19 124 -25 1 1031 249 297 47 71 chr12 58513593 58513620 -62743910 + ID_B1 SINE B4 100 223 -1 1 1031 289 299 80 21 chr12 58515805 58515993 -62741537 + MER112 DNA MER1_type 50 248 -13 1 1031 502 292 109 18 chr12 58516103 58516447 -62741083 - Charlie4a DNA MER1_type -65 443 61 1 1031 555 274 70 40 chr12 58516510 58516738 -62740792 + MLT1B LTR MaLR 4 238 -152 2 1031 521 327 39 25 chr12 58517083 58517279 -62740251 + B3 SINE B2 13 212 -4 2 1031 635 314 15 0 chr12 58517665 58517802 -62739728 + RSINE1 SINE B4 21 159 -6 2 1031 496 282 61 104 chr12 58517950 58518008 -62739522 + L1MB4 LINE L1 5521 5578 -602 2 1031 2742 96 0 15 chr12 58518008 58518401 -62739129 + L1_Mus1 LINE L1 6181 6567 0 2 1031 496 282 61 104 chr12 58518401 58518718 -62738812 + L1MB4 LINE L1 5579 5880 -300 2 1031 402 265 78 10 chr12 58518735 58518838 -62738692 + ID_B1 SINE B4 68 177 -47 2 1031 198 0 0 0 chr12 58519897 58519919 -62737611 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 1031 1196 86 6 0 chr12 58519932 58520094 -62737436 - B2_Mm1t SINE B2 -30 163 1 2 1031 2313 66 24 27 chr12 58520459 58520787 -62736743 - IAPLTR2b LTR ERVK 0 327 1 2 1031 447 68 0 0 chr12 58520823 58520882 -62736648 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1031 241 200 17 0 chr12 58521518 58521578 -62735952 + (TTTAA)n Simple_repeat Simple_repeat 1 61 0 3 1031 393 22 0 0 chr12 58521853 58521899 -62735631 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3 1031 394 298 164 49 chr12 58521971 58522275 -62735255 + Lx8 LINE L1 6471 6809 -664 3 1031 3832 238 24 20 chr12 58522276 58523422 -62734108 + Lx8 LINE L1 4778 5928 -1545 3 1031 1430 213 30 16 chr12 58523558 58523863 -62733667 - ORR1B2 LTR MaLR 0 367 59 3 1031 4739 233 106 77 chr12 58523869 58524986 -62732544 - Lx6 LINE L1 0 7460 6252 3 1031 440 182 34 0 chr12 58524986 58525074 -62732456 - ORR1B2 LTR MaLR -282 92 2 3 1031 4739 233 106 77 chr12 58525074 58525620 -62731910 - Lx6 LINE L1 0 6251 5659 3 1031 1304 133 13 0 chr12 58525625 58525858 -62731672 - L1_Mur1 LINE L1 -424 5462 5227 3 1031 1632 68 67 46 chr12 58526399 58526706 -62730824 + L1_Mus3 LINE L1 6240 6566 0 3 1031 838 70 0 25 chr12 58526713 58526831 -62730699 + B1_Mus2 SINE Alu 27 141 -6 3 1031 1036 108 6 6 chr12 58526831 58526998 -62730532 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 3 1031 3992 34 0 0 chr12 58527412 58527881 -62729649 + L1Md_T LINE L1 6114 6582 0 4 1031 367 229 119 15 chr12 58528110 58528226 -62729304 + MIRc SINE MIR 90 209 -59 4 1031 580 297 98 24 chr12 58528556 58528811 -62728719 + B4A SINE B4 5 278 -14 4 1031 273 98 0 0 chr12 58528826 58528867 -62728663 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1031 25 31 0 0 chr12 58528989 58529021 -62728509 + AT_rich Low_complexity Low_complexity 1 32 0 4 1031 210 37 0 0 chr12 58529111 58529138 -62728392 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1031 206 250 75 45 chr12 58529331 58529398 -62728132 - MIR SINE MIR -111 151 83 4 1031 315 318 90 53 chr12 58531081 58531178 -62726352 + L1M4 LINE L1 3855 3959 -2187 4 1031 1595 32 21 0 chr12 58531178 58531367 -62726163 + B2_Mm1t SINE B2 1 193 0 4 1031 315 318 90 53 chr12 58531367 58531738 -62725792 + L1M4 LINE L1 3960 4339 -1807 4 1031 392 222 0 95 chr12 58532015 58532165 -62725365 + L1M4 LINE L1 4694 4831 -1312 4 1031 618 26 0 0 chr12 58532178 58532254 -62725276 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1031 237 204 0 0 chr12 58532261 58532315 -62725215 - L1M LINE L1 -923 5374 5321 5 1031 3427 116 67 24 chr12 58532440 58532954 -62724576 + Lx2B LINE L1 6430 6976 -24 5 1031 1131 106 60 22 chr12 58532954 58533138 -62724392 + B2_Mm2 SINE B2 1 191 -4 5 1031 3427 116 67 24 chr12 58533138 58533162 -62724368 + Lx2B LINE L1 6977 6991 -9 5 1031 315 285 152 85 chr12 58533603 58533933 -62723597 + L1MD LINE L1 4620 4971 -1175 5 1031 294 73 0 0 chr12 58535909 58535950 -62721580 + (TCCCC)n Simple_repeat Simple_repeat 1 41 0 5 1031 305 209 170 32 chr12 58535950 58536044 -62721486 - HAL1 LINE L1 -711 1796 1690 5 1031 354 320 126 11 chr12 58536150 58536428 -62721102 - HAL1 LINE L1 -1028 1479 1170 5 1031 1265 34 0 0 chr12 58536429 58536576 -62720954 - B1_Mus2 SINE Alu 0 147 1 5 1031 738 161 17 0 chr12 58539729 58539847 -62717683 + B1_Mus1 SINE Alu 27 146 -2 5 1031 592 147 17 8 chr12 58539872 58539989 -62717541 + GA-rich Low_complexity Low_complexity 3 120 0 5 1031 222 37 0 0 chr12 58539991 58540018 -62717512 + (CAAGC)n Simple_repeat Simple_repeat 4 30 0 5 1031 1091 45 0 0 chr12 58540019 58540153 -62717377 + B1_Mm SINE Alu 9 142 -5 6 1031 713 12 0 11 chr12 58540184 58540271 -62717259 + (GAA)n Simple_repeat Simple_repeat 2 87 0 6 1031 41 0 0 0 chr12 58540284 58540325 -62717205 + AT_rich Low_complexity Low_complexity 1 41 0 6 1031 1445 95 19 87 chr12 58540807 58541073 -62716457 - Lx3A LINE L1 0 6981 6734 6 1031 2177 49 0 0 chr12 58541151 58541418 -62716112 - L1_Mus1 LINE L1 0 6567 6301 6 1031 1037 137 147 0 chr12 58542572 58542769 -62714761 - URR1A DNA MER1_type 0 226 1 6 1031 294 148 0 0 chr12 58543896 58543950 -62713580 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 6 1031 756 251 71 0 chr12 58543957 58544140 -62713390 - B3 SINE B2 -20 196 1 6 1031 2139 111 0 18 chr12 58544259 58544599 -62712931 - Lx3A LINE L1 -4 6977 6644 6 1031 26 50 0 0 chr12 58544771 58544811 -62712719 + AT_rich Low_complexity Low_complexity 1 40 0 6 1031 216 0 0 0 chr12 58545464 58545488 -62712042 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1031 442 101 0 0 chr12 58546432 58546501 -62711029 + L1Md_F2 LINE L1 6502 6570 -12 7 1031 309 312 81 30 chr12 58547449 58547548 -62709982 - B2_Mm1t SINE B2 -111 105 2 7 1031 407 230 203 0 chr12 58548962 58549190 -62708340 - L1MC LINE L1 -3245 2901 2619 7 1031 198 0 0 0 chr12 58549314 58549336 -62708194 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1031 307 315 103 4 chr12 58549348 58549609 -62707921 - L1MD LINE L1 -3026 3120 2834 7 1031 636 247 50 79 chr12 58549626 58549828 -62707702 + B3 SINE B2 16 211 -5 7 1031 22 0 0 0 chr12 58549831 58549853 -62707677 + AT_rich Low_complexity Low_complexity 1 22 0 7 1031 443 283 101 9 chr12 58549866 58550094 -62707436 - L1MD LINE L1 -3322 2824 2576 7 1031 232 282 169 30 chr12 58550800 58550957 -62706573 - MIRc SINE MIR -94 174 2 7 1031 305 341 38 23 chr12 58551015 58551147 -62706383 - MER20 DNA MER1_type -85 134 1 7 1031 249 305 201 34 chr12 58551157 58551391 -62706139 + B4A SINE B4 9 281 -11 8 1031 251 204 0 100 chr12 58551365 58551425 -62706105 + RSINE1 SINE B4 111 164 -1 8 1031 234 268 158 0 chr12 58551967 58552049 -62705481 + PB1D10 SINE Alu 1 95 -22 8 1031 273 29 0 0 chr12 58552064 58552098 -62705432 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1031 347 284 125 94 chr12 58552305 58552433 -62705097 - MTEa LTR MaLR -246 133 2 8 1031 983 50 0 0 chr12 58553246 58553367 -62704163 - B1_Mus2 SINE Alu -2 145 25 8 1031 859 133 60 48 chr12 58553392 58553558 -62703972 - B2_Mm2 SINE B2 -26 169 2 8 1031 1059 305 13 54 chr12 58553559 58553950 -62703580 - Lx8 LINE L1 -757 6716 6342 8 1031 2273 89 13 0 chr12 58554127 58554442 -62703088 + ORR1A2 LTR MaLR 2 320 -7 8 1031 796 214 138 14 chr12 58554540 58554758 -62702772 - Lx7 LINE L1 -1817 5879 5635 8 1031 522 191 0 0 chr12 58554770 58554880 -62702650 + Lx4A LINE L1 6946 7055 -3 9 1031 606 322 30 70 chr12 58555004 58555402 -62702128 + Lx8 LINE L1 6742 7123 -350 9 1031 375 302 57 62 chr12 58555878 58556072 -62701458 + MIR SINE MIR 13 205 -57 9 1031 1614 99 40 0 chr12 58556146 58556399 -62701131 + Lx3C LINE L1 6413 6675 -301 9 1031 864 114 0 71 chr12 58556399 58556569 -62700961 + Lx3C LINE L1 6817 6974 -2 9 1031 243 88 0 0 chr12 58558217 58558251 -62699279 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1031 184 230 88 75 chr12 58559676 58559756 -62697774 + L4 LINE RTE 1616 1696 -333 9 1031 544 212 218 0 chr12 58562073 58562243 -62695287 + B3 SINE B2 4 210 -6 9 1031 836 153 44 0 chr12 58562341 58562478 -62695052 - B1_Mus1 SINE Alu 0 148 6 9 1031 273 109 0 0 chr12 58562478 58562524 -62695006 + (CCA)n Simple_repeat Simple_repeat 1 46 0 9 1031 28 48 0 0 chr12 58563061 58563103 -62694427 + AT_rich Low_complexity Low_complexity 1 42 0 9 1031 853 246 5 36 chr12 58563274 58563468 -62694062 + B3A SINE B2 11 198 0 1 1031 21 36 0 0 chr12 58563868 58563896 -62693634 + AT_rich Low_complexity Low_complexity 1 28 0 1 1031 30 77 0 0 chr12 58567199 58567264 -62690266 + AT_rich Low_complexity Low_complexity 1 65 0 1 1031 22 80 0 0 chr12 58567375 58567425 -62690105 + AT_rich Low_complexity Low_complexity 1 50 0 1 1031 21 57 0 0 chr12 58568460 58568495 -62689035 + AT_rich Low_complexity Low_complexity 1 35 0 1 1031 29 28 0 0 chr12 58568531 58568567 -62688963 + AT_rich Low_complexity Low_complexity 1 36 0 1 1031 331 316 148 78 chr12 58569124 58569372 -62688158 + L1MC4a LINE L1 5501 5775 -2107 1 1031 2369 104 3 0 chr12 58569372 58569698 -62687832 + ORR1A2 LTR MaLR 1 327 0 1 1031 331 316 148 78 chr12 58569698 58569806 -62687724 + L1MC4a LINE L1 5776 5882 -2000 1 1031 485 254 43 65 chr12 58570072 58570211 -62687319 - RSINE1 SINE B4 -29 136 1 1 1031 325 326 55 28 chr12 58570775 58570920 -62686610 + L1MC4a LINE L1 7097 7245 -797 1 1031 393 291 2 11 chr12 58570939 58571052 -62686478 + PB1D10 SINE Alu 14 126 -21 1 1031 5423 111 3 3 chr12 58571088 58572108 -62685422 - L1_Mus4 LINE L1 -627 6009 4988 1 1031 4666 85 20 2 chr12 58572108 58572746 -62684784 + L1_Mus4 LINE L1 5981 6630 -6 1 1031 380 335 19 75 chr12 58573014 58573227 -62684303 - RMER30 DNA MER1_type 0 202 2 1 1031 7599 81 17 2 chr12 58575072 58576172 -62681358 + L1_Mm LINE L1 4533 5649 -234 1 1031 759 275 0 0 chr12 58576197 58576397 -62681133 - Lx9 LINE L1 -736 6908 6709 1 1031 276 30 0 0 chr12 58576397 58576430 -62681100 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1031 2337 224 65 24 chr12 58576464 58577128 -62680402 - Lx2B LINE L1 -4 6996 6306 1 1031 210 243 0 0 chr12 58577179 58577216 -62680314 + B4A SINE B4 1 37 -255 1 1031 665 280 28 11 chr12 58577289 58577466 -62680064 + B4A SINE B4 57 236 -56 1 1031 272 221 0 13 chr12 58577466 58577544 -62679986 + (TAGA)n Simple_repeat Simple_repeat 3 79 0 1 1031 250 309 3 0 chr12 58578209 58578294 -62679236 + ID4_ SINE ID 4 89 -63 1 1031 351 108 330 43 chr12 58578465 58578580 -62678950 - B2_Mm2 SINE B2 -1 194 47 1 1031 1191 119 11 0 chr12 58578627 58578804 -62678726 - B2_Mm1t SINE B2 -14 179 1 1 1031 192 158 0 0 chr12 58578893 58578931 -62678599 + T-rich Low_complexity Low_complexity 1 38 0 1 1031 655 243 53 106 chr12 58578945 58579152 -62678378 - B3A SINE B2 -1 197 2 1 1031 333 100 0 0 chr12 58579184 58579234 -62678296 + (GGA)n Simple_repeat Simple_repeat 1 50 0 1 1031 1219 41 0 0 chr12 58580266 58580412 -62677118 + B1_Mus1 SINE Alu 2 147 -1 1 1031 423 0 0 0 chr12 58580775 58580822 -62676708 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1031 552 308 82 17 chr12 58581329 58581545 -62675985 + B4A SINE B4 1 231 -61 1 1031 837 242 43 106 chr12 58581545 58581713 -62675817 + B3 SINE B2 1 165 -51 1 1031 321 118 0 0 chr12 58581713 58581764 -62675766 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1031 547 242 43 106 chr12 58581764 58581803 -62675727 + B2_Mm2 SINE B2 152 195 0 1 1031 892 144 0 0 chr12 58583642 58583774 -62673756 + B1_Mur4 SINE Alu 1 132 -18 1 1031 564 191 48 0 chr12 58583821 58583926 -62673604 + PB1D9 SINE Alu 2 111 -9 1 1031 275 0 0 28 chr12 58583926 58583962 -62673568 + (CAT)n Simple_repeat Simple_repeat 2 36 0 1 1031 514 275 0 0 chr12 58583997 58584117 -62673413 + B3A SINE B2 1 120 -78 1 1031 432 0 0 0 chr12 58584638 58584686 -62672844 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1031 298 294 71 35 chr12 58585193 58585306 -62672224 - B1F SINE Alu -29 120 4 1 1031 721 214 14 7 chr12 58586043 58586184 -62671346 + B1_Mur1 SINE Alu 1 142 -7 1 1031 795 243 100 81 chr12 58586327 58586657 -62670873 + Lx7 LINE L1 7144 7481 -215 1 1031 657 0 0 0 chr12 58586657 58586730 -62670800 + (TTC)n Simple_repeat Simple_repeat 2 74 0 1 1031 795 243 100 81 chr12 58586730 58586770 -62670760 + Lx7 LINE L1 7482 7521 -175 1 1031 4988 40 2 0 chr12 58587446 58588041 -62669489 - L1Md_T LINE L1 0 6582 5987 1 1031 611 37 12 0 chr12 58588041 58588123 -62669407 + L1Md_T LINE L1 5921 6003 -579 1 1031 694 238 14 0 chr12 58588353 58588500 -62669030 - B1_Mur1 SINE Alu 0 149 1 1 1031 342 67 0 0 chr12 58588545 58588590 -62668940 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1031 2445 40 0 26 chr12 58588595 58588905 -62668625 - L1_Mus1 LINE L1 0 6567 6266 1 128 1079 145 130 0 chr12 58589035 58589235 -62668295 - URR1A DNA MER1_type 0 226 1 1 1032 28 0 0 0 chr12 58589409 58589437 -62668093 + AT_rich Low_complexity Low_complexity 1 28 0 1 1032 24 0 0 0 chr12 58589464 58589488 -62668042 + AT_rich Low_complexity Low_complexity 1 24 0 1 1032 541 165 119 0 chr12 58589509 58589618 -62667912 + MTC LTR MaLR 1 122 -299 1 1032 8808 105 34 0 chr12 58589634 58591435 -62666095 - Lx4A LINE L1 0 7058 5178 1 1032 1908 125 72 7 chr12 58591435 58591741 -62665789 + MTC LTR MaLR 92 417 -4 1 1032 830 202 32 42 chr12 58592348 58592565 -62664965 - B3 SINE B2 0 216 2 1 1032 241 178 82 0 chr12 58592570 58592643 -62664887 - L1MB4 LINE L1 -1 6179 6101 1 1032 679 254 0 35 chr12 58592704 58592847 -62664683 + B4A SINE B4 155 292 0 1 1032 437 111 0 0 chr12 58592947 58593010 -62664520 + Lx9 LINE L1 7143 7205 -439 1 1032 249 209 14 69 chr12 58593143 58593215 -62664315 + B1F SINE Alu 82 149 0 1 1032 239 349 65 46 chr12 58593467 58593620 -62663910 + MIR SINE MIR 2 157 -105 1 1032 2611 165 47 59 chr12 58593839 58594413 -62663117 + Lx5 LINE L1 6480 7046 -4 1 1032 24 32 0 0 chr12 58594487 58594518 -62663012 + AT_rich Low_complexity Low_complexity 1 31 0 1 1032 186 71 0 0 chr12 58594944 58594972 -62662558 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1032 1094 37 0 0 chr12 58595479 58595614 -62661916 + B1_Mm SINE Alu 13 147 0 1 1032 26 30 0 0 chr12 58595614 58595647 -62661883 + AT_rich Low_complexity Low_complexity 1 33 0 1 1032 688 198 8 0 chr12 58596176 58596302 -62661228 + B1_Mur1 SINE Alu 15 141 -8 1 1032 263 49 24 0 chr12 58599122 58599163 -62658367 + (CACCC)n Simple_repeat Simple_repeat 5 46 0 1 1032 560 235 40 80 chr12 58600242 58600441 -62657089 + B3A SINE B2 4 194 -4 1 1032 21 0 0 0 chr12 58600790 58600811 -62656719 + AT_rich Low_complexity Low_complexity 1 21 0 1 1032 2680 292 30 38 chr12 58602368 58603558 -62653972 + Lx8 LINE L1 5996 7162 -311 1 1032 324 0 0 0 chr12 58603561 58603597 -62653933 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1 1032 311 254 205 132 chr12 58603601 58603661 -62653869 + B4A SINE B4 2 65 -227 1 1032 994 139 78 0 chr12 58603661 58603841 -62653689 + L1Md_F2 LINE L1 6389 6582 0 1 1032 311 254 205 132 chr12 58603841 58604038 -62653492 + B4A SINE B4 66 277 -15 1 1032 309 264 158 11 chr12 58604141 58604393 -62653137 + L1_Rod LINE L1 5508 5854 -446 1 1032 351 0 0 0 chr12 58604464 58604503 -62653027 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1032 354 299 65 0 chr12 58604645 58604752 -62652778 + PB1D10 SINE Alu 2 115 -2 1 1032 182 37 0 36 chr12 58604757 58604785 -62652745 + (TAA)n Simple_repeat Simple_repeat 3 29 0 1 1032 402 21 0 0 chr12 58604785 58604832 -62652698 + (TTA)n Simple_repeat Simple_repeat 3 49 0 1 1032 402 317 193 18 chr12 58605311 58605700 -62651830 - L1MEg1 LINE L1 -4820 2498 2042 1 1032 232 95 45 56 chr12 58605801 58605890 -62651640 + T-rich Low_complexity Low_complexity 1 88 0 1 1032 942 35 6 130 chr12 58605890 58606052 -62651478 - B1_Mm SINE Alu 0 147 6 1 1032 422 355 87 45 chr12 58606154 58606600 -62650930 - L1MEg1 LINE L1 -5637 1681 1217 1 1032 24 0 0 0 chr12 58606676 58606700 -62650830 + AT_rich Low_complexity Low_complexity 1 24 0 1 1032 1550 241 124 19 chr12 58606993 58607476 -62650054 - RMER5 LTR ERV1 0 534 1 1 1032 257 250 18 0 chr12 58607624 58607680 -62649850 + ID4 SINE ID 2 58 -25 1 1032 575 287 37 25 chr12 58607853 58607993 -62649537 + RSINE1 SINE B4 3 145 -20 1 1032 302 0 26 0 chr12 58607993 58608031 -62649499 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1032 575 287 37 25 chr12 58608031 58608051 -62649479 + RSINE1 SINE B4 146 165 0 1 1032 416 301 103 21 chr12 58608123 58608357 -62649173 - L1MEg1 LINE L1 -5465 770 518 1 1032 566 317 36 5 chr12 58608565 58608784 -62648746 - L1MEg1 LINE L1 -6008 227 2 1 1032 793 155 4 8 chr12 58609533 58609794 -62647736 + GA-rich Low_complexity Low_complexity 1 260 0 1 1032 26 0 0 0 chr12 58610458 58610484 -62647046 + AT_rich Low_complexity Low_complexity 1 26 0 1 1032 204 333 69 61 chr12 58611526 58611772 -62645758 + L2c LINE L2 3082 3329 -58 1 1032 281 200 0 39 chr12 58614083 58614135 -62643395 - L2b LINE L2 -10 3365 3316 1 1032 229 176 14 29 chr12 58614333 58614403 -62643127 + (TATG)n Simple_repeat Simple_repeat 4 72 0 1 1032 426 20 0 0 chr12 58616299 58616350 -62641180 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1032 187 280 20 0 chr12 58616890 58616940 -62640590 - MIR SINE MIR -125 83 33 1 1032 855 78 0 0 chr12 58617304 58617420 -62640110 + (TTCTCC)n Simple_repeat Simple_repeat 3 118 0 1 1032 406 190 30 0 chr12 58617629 58617729 -62639801 + BC1_Mm scRNA scRNA 1 103 -49 1 1032 324 0 0 0 chr12 58619110 58619146 -62638384 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1032 321 26 0 0 chr12 58620818 58620856 -62636674 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1032 2404 95 31 29 chr12 58620858 58621239 -62636291 - Lx2 LINE L1 -2 6995 6614 1 1032 396 259 9 0 chr12 58622135 58622251 -62635279 + PB1D10 SINE Alu 1 117 0 1 1032 708 174 6 13 chr12 58622251 58622408 -62635122 + GA-rich Low_complexity Low_complexity 3 158 0 1 1032 1079 79 0 0 chr12 58622409 58622548 -62634982 + B1_Mm SINE Alu 9 147 0 1 1032 540 132 9 19 chr12 58622569 58622677 -62634853 + GA-rich Low_complexity Low_complexity 4 110 0 1 1032 237 315 55 0 chr12 58622965 58623038 -62634492 + ID4_ SINE ID 7 83 0 1 1032 286 299 9 93 chr12 58623311 58623418 -62634112 + MT2B LTR ERVL 143 240 -361 1 1032 827 189 0 0 chr12 58623344 58623476 -62634054 + B1_Mur2 SINE Alu 12 143 -6 1 1032 1564 184 90 6 chr12 58623782 58624126 -62633404 - ORR1D1 LTR MaLR -1 373 1 1 1032 329 289 83 21 chr12 58625017 58625162 -62632368 + RSINE1 SINE B4 4 157 -8 1 1032 1197 249 97 70 chr12 58625384 58625694 -62631836 - Lx6 LINE L1 -4 7456 7126 2 1032 1189 82 0 0 chr12 58625694 58625840 -62631690 + B1_Mus2 SINE Alu 1 146 -1 2 1032 1197 249 97 70 chr12 58625840 58625931 -62631599 - Lx6 LINE L1 -335 7125 7044 2 1032 656 315 25 5 chr12 58627086 58627284 -62630246 + ID_B1 SINE B4 2 203 -21 2 1032 337 323 54 23 chr12 58627169 58627299 -62630231 + B1F2 SINE Alu 5 138 -11 2 1032 595 293 5 37 chr12 58627299 58627487 -62630043 + B3A SINE B2 2 183 -15 2 1032 240 247 20 128 chr12 58627490 58627511 -62630019 + MT2B LTR ERVL 151 160 -441 2 1032 338 330 5 5 chr12 58627511 58627608 -62629922 + PB1D10 SINE Alu 3 99 -28 2 1032 418 334 118 25 chr12 58627619 58627788 -62629742 + L1MEg LINE L1 828 1014 -5070 2 1032 321 89 0 0 chr12 58627788 58627833 -62629697 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1032 418 334 118 25 chr12 58627833 58627985 -62629545 + L1MEg LINE L1 1015 1179 -4905 2 1032 474 331 51 72 chr12 58628094 58628468 -62629062 + L1MCc LINE L1 860 1225 -5198 2 1032 1362 80 28 0 chr12 58628536 58628712 -62628818 + B2_Mm2 SINE B2 1 181 -14 2 1032 320 272 86 23 chr12 58628865 58628993 -62628537 + L1MEg LINE L1 1233 1368 -4716 2 1032 287 208 28 0 chr12 58629056 58629128 -62628402 + G-rich Low_complexity Low_complexity 5 78 0 2 1032 430 369 76 74 chr12 58630114 58630333 -62627197 - MER90 LTR ERV1 -45 530 325 2 1032 1157 75 0 0 chr12 58630333 58630480 -62627050 + B1_Mus1 SINE Alu 1 147 -1 2 1032 430 369 76 74 chr12 58630480 58630708 -62626822 - MER90 LTR ERV1 -251 324 83 2 1032 228 111 0 0 chr12 58631403 58631439 -62626091 + (CAG)n Simple_repeat Simple_repeat 1 36 0 2 1032 300 227 40 13 chr12 58632196 58632272 -62625258 - B3A SINE B2 -107 91 14 2 1032 1551 48 32 0 chr12 58632297 58632484 -62625046 - B2_Mm1t SINE B2 0 193 1 2 1032 522 266 0 0 chr12 58632547 58632656 -62624874 + PB1D10 SINE Alu 1 109 -8 2 1032 464 167 23 45 chr12 58634577 58634665 -62622865 + PB1D10 SINE Alu 24 109 -8 2 1032 495 0 0 0 chr12 58635419 58635474 -62622056 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1032 297 100 0 0 chr12 58636866 58636916 -62620614 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1032 180 0 0 0 chr12 58639596 58639616 -62617914 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1032 24 0 0 0 chr12 58641358 58641382 -62616148 + AT_rich Low_complexity Low_complexity 1 24 0 2 1032 180 0 0 0 chr12 58642583 58642603 -62614927 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1032 228 35 0 0 chr12 58642907 58642936 -62614594 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1032 21 36 0 0 chr12 58643441 58643469 -62614061 + GC_rich Low_complexity Low_complexity 1 28 0 2 1032 22 35 0 0 chr12 58643947 58643976 -62613554 + GC_rich Low_complexity Low_complexity 1 29 0 2 1032 22 35 0 0 chr12 58645099 58645128 -62612402 + AT_rich Low_complexity Low_complexity 1 29 0 2 1032 477 0 0 0 chr12 58645271 58645324 -62612206 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1032 201 64 62 21 chr12 58646867 58646915 -62610615 + (CGCGG)n Simple_repeat Simple_repeat 4 53 0 2 1032 38 39 0 0 chr12 58647144 58647196 -62610334 + GC_rich Low_complexity Low_complexity 1 52 0 2 1032 257 167 19 0 chr12 58647315 58647369 -62610161 + A-rich Low_complexity Low_complexity 1 55 0 2 1032 180 111 0 0 chr12 58647950 58647977 -62609553 + (TCC)n Simple_repeat Simple_repeat 2 28 0 2 1032 450 0 0 0 chr12 58648817 58648867 -62608663 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1032 216 0 0 0 chr12 58654882 58654906 -62602624 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 2 1032 261 266 59 71 chr12 58656907 58656992 -62600538 + LTR33 LTR ERVL 64 147 -368 2 1032 7961 65 3 2 chr12 58657732 58658950 -62598580 - L1_Mus1 LINE L1 0 6654 5357 2 1032 370 276 0 0 chr12 58658997 58659073 -62598457 - ID4 SINE ID 0 83 8 2 1032 1658 128 156 0 chr12 58659427 58659709 -62597821 - ORR1A3 LTR MaLR 0 326 1 2 1032 8153 135 77 14 chr12 58659709 58661291 -62596239 - ORR1A3-int LTR MaLR 0 1963 3 2 1032 1693 186 66 33 chr12 58661547 58661909 -62595621 + ORR1D1 LTR MaLR 1 374 0 2 1032 247 283 86 11 chr12 58661983 58662076 -62595454 + MIR SINE MIR 76 175 -87 2 1032 220 184 41 0 chr12 58662333 58662382 -62595148 - MIRb SINE MIR -85 183 133 2 1032 963 65 0 0 chr12 58662561 58662684 -62594846 - L1_Mus2 LINE L1 -767 5871 5749 2 1032 5010 69 25 12 chr12 58662684 58663359 -62594171 + L1_Mus2 LINE L1 5882 6565 -1 2 1032 205 75 0 48 chr12 58663407 58663449 -62594081 + (CACCC)n Simple_repeat Simple_repeat 3 42 0 2 1032 2014 141 52 128 chr12 58663513 58663798 -62593732 - MTC LTR MaLR -8 413 107 2 1032 1510 58 0 16 chr12 58663798 58663992 -62593538 + B2_Mm2 SINE B2 1 191 -4 2 1032 2014 141 52 128 chr12 58663992 58664153 -62593377 - MTC LTR MaLR -315 106 1 2 1032 309 249 104 60 chr12 58664234 58664476 -62593054 - L1ME3B LINE L1 -214 5948 5702 2 1032 242 236 124 26 chr12 58666096 58666209 -62591321 - L1ME2 LINE L1 -180 5984 5861 2 1032 325 261 61 35 chr12 58666264 58666379 -62591151 - PB1D9 SINE Alu -1 119 2 2 1032 322 270 72 14 chr12 58666381 58666520 -62591010 - L1M4 LINE L1 -1399 4747 4601 2 1032 267 54 0 0 chr12 58666521 58666558 -62590972 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1032 1202 176 13 22 chr12 58667870 58668097 -62589433 - URR1B DNA MER1_type 0 225 1 2 1032 198 0 0 0 chr12 58668408 58668430 -62589100 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1032 275 289 92 73 chr12 58668458 58668910 -62588620 + L1M2 LINE L1 1665 2205 -4344 2 1032 381 280 210 36 chr12 58668950 58669169 -62588361 - RMER15 LTR ERVL -49 526 270 2 1032 896 305 75 62 chr12 58669353 58670158 -62587372 + L1_Mur3 LINE L1 1525 2339 -3541 2 1032 232 185 93 0 chr12 58670159 58670213 -62587317 + L1MDa LINE L1 1840 1898 -4735 2 1032 2030 148 48 18 chr12 58670363 58670693 -62586837 - MTC LTR MaLR 0 421 82 2 1032 842 0 10 0 chr12 58670817 58670915 -62586615 + (GA)n Simple_repeat Simple_repeat 1 99 0 2 1032 929 303 67 36 chr12 58670934 58671691 -62585839 + L1M2 LINE L1 2792 3575 -3270 2 1032 289 316 53 0 chr12 58671838 58671914 -62585616 - RSINE1 SINE B4 -19 146 67 2 1032 480 254 49 35 chr12 58672478 58672621 -62584909 + B1F2 SINE Alu 5 149 0 2 1032 559 191 0 45 chr12 58673797 58673907 -62583623 - PB1D9 SINE Alu -10 110 6 2 1032 301 321 96 7 chr12 58675476 58675611 -62581919 - B1F1 SINE Alu 0 149 3 2 1032 1015 197 10 0 chr12 58676395 58676593 -62580937 - URR1B DNA MER1_type -1 224 25 2 1032 182 150 0 24 chr12 58677745 58677786 -62579744 + (CATG)n Simple_repeat Simple_repeat 3 42 0 2 1032 224 304 74 42 chr12 58678458 58678553 -62578977 - MIR SINE MIR -136 132 32 2 1032 1291 241 54 27 chr12 58678739 58679071 -62578459 + MTE2b LTR MaLR 39 379 0 2 1032 724 293 152 8 chr12 58679148 58679537 -62577993 + L1MD LINE L1 2148 2592 -3554 2 1032 743 249 377 30 chr12 58679854 58680106 -62577424 - Lx9 LINE L1 -888 6756 6417 2 1032 450 0 0 0 chr12 58680106 58680156 -62577374 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1032 301 291 0 64 chr12 58680156 58680238 -62577292 - Lx9 LINE L1 -1228 6416 6340 2 1032 600 53 0 0 chr12 58680239 58680315 -62577215 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1032 1339 241 49 64 chr12 58680399 58680541 -62576989 - Lx9 LINE L1 -1536 6108 5981 2 1032 2419 121 38 3 chr12 58680541 58680906 -62576624 + ORR1C1 LTR MaLR 1 378 0 2 1032 6544 208 118 46 chr12 58680906 58683109 -62574421 - Lx9 LINE L1 -1664 5980 3583 2 1032 229 204 61 0 chr12 58683111 58683160 -62574370 + polypyrimidine Low_complexity Low_complexity 4 55 0 2 1032 277 194 43 43 chr12 58683161 58683231 -62574299 - Lx9 LINE L1 -2254 3593 3524 2 1032 2454 230 58 7 chr12 58683230 58683794 -62573736 - Lx8 LINE L1 -558 6915 6323 2 1032 238 87 21 21 chr12 58683884 58683931 -62573599 + (CAA)n Simple_repeat Simple_repeat 2 48 0 2 1032 216 0 0 0 chr12 58685270 58685294 -62572236 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1032 1305 53 0 0 chr12 58685294 58685634 -62571896 + (CA)n Simple_repeat Simple_repeat 1 340 0 2 1032 459 0 0 0 chr12 58686393 58686444 -62571086 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1032 522 333 33 65 chr12 58686923 58687199 -62570331 - MLT1J LTR MaLR -12 500 234 2 1032 632 266 14 27 chr12 58687469 58687651 -62569879 - B3A SINE B2 -26 190 16 2 1032 408 356 94 19 chr12 58688159 58688477 -62569053 - L2a LINE L2 -90 3336 2995 2 1032 1128 96 0 19 chr12 58689396 58689556 -62567974 + B2_Mm2 SINE B2 2 158 -37 2 1032 192 77 0 0 chr12 58689556 58689582 -62567948 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 1032 198 0 0 0 chr12 58689661 58689683 -62567847 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 1032 2474 98 6 9 chr12 58689750 58690078 -62567452 - ORR1A2 LTR MaLR 0 327 1 2 1032 249 33 0 0 chr12 58690132 58690162 -62567368 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2 1032 2177 239 16 38 chr12 58691494 58692081 -62565449 - Lx5 LINE L1 -9 7041 6486 2 1032 351 0 0 0 chr12 58692285 58692324 -62565206 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1032 588 271 78 84 chr12 58692337 58692671 -62564859 - Tigger15a DNA TcMar -321 394 63 2 1032 208 225 0 0 chr12 58693602 58693642 -62563888 - L2 LINE L2 -587 2832 2793 2 1032 1212 59 0 13 chr12 58694325 58694480 -62563050 + L1Md_F2 LINE L1 6419 6571 -11 2 1032 430 250 28 19 chr12 58694628 58694734 -62562796 - PB1D10 SINE Alu -10 107 1 2 1032 250 323 111 26 chr12 58694925 58695151 -62562379 - HAL1 LINE L1 -443 2064 1820 2 1032 331 256 34 74 chr12 58695204 58695230 -62562300 - HAL1 LINE L1 -818 1689 1671 2 1032 371 21 0 20 chr12 58695230 58695279 -62562251 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1032 331 256 34 74 chr12 58695279 58695400 -62562130 - HAL1 LINE L1 -837 1670 1548 2 1032 283 261 116 0 chr12 58696293 58696362 -62561168 - ID2 SINE ID -2 81 5 2 1032 205 315 133 37 chr12 58697222 58697357 -62560173 + MIRb SINE MIR 115 262 -6 2 1032 444 238 0 0 chr12 58697890 58698037 -62559493 + (TG)n Simple_repeat Simple_repeat 1 147 0 2 1032 286 393 46 20 chr12 58698428 58698623 -62558907 - LTR88b LTR Gypsy? -637 200 1 2 1032 23 0 0 0 chr12 58698635 58698658 -62558872 + AT_rich Low_complexity Low_complexity 1 23 0 2 1032 276 217 202 21 chr12 58698990 58699069 -62558461 - MLT1H2 LTR MaLR -12 477 382 2 1032 819 254 119 135 chr12 58699069 58699447 -62558083 - MTE2a LTR MaLR -3 376 5 3 1032 250 196 18 0 chr12 58700834 58700890 -62556640 - Lx6 LINE L1 -26 7434 7378 3 1032 397 314 8 8 chr12 58700891 58701010 -62556520 - MLT1F LTR MaLR -13 556 438 3 1032 38855 30 0 0 chr12 58701066 58707123 -62550407 - L1Md_T LINE L1 0 6585 432 3 1032 702 298 213 18 chr12 58707123 58707451 -62550079 - MLT1F LTR MaLR -154 394 3 3 1032 226 286 16 0 chr12 58707498 58707561 -62549969 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1032 240 262 16 16 chr12 58707950 58708012 -62549518 - tRNA-Ala-GCA tRNA tRNA -13 62 1 3 1032 1110 196 17 21 chr12 58708113 58708348 -62549182 - Lx5 LINE L1 -4 7046 6813 3 1032 246 62 0 0 chr12 58708940 58708972 -62548558 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 3 1032 985 151 24 12 chr12 58709019 58709187 -62548343 - B2_Mm2 SINE B2 -25 170 1 3 1032 1031 301 87 19 chr12 58709566 58709945 -62547585 - MTD LTR MaLR -14 405 1 3 1032 187 204 163 0 chr12 58711643 58711692 -62545838 - MIRc SINE MIR -113 155 99 3 1032 466 234 23 39 chr12 58711811 58711940 -62545590 - B1F SINE Alu -5 144 18 3 1032 258 247 55 110 chr12 58711977 58712086 -62545444 - BC1_Mm scRNA scRNA -49 103 1 3 1032 293 254 105 53 chr12 58712102 58712235 -62545295 - B1F1 SINE Alu -9 140 1 3 1032 678 255 7 7 chr12 58712347 58712493 -62545037 - B1_Mur1 SINE Alu -2 147 2 3 1032 483 212 35 6 chr12 58712689 58712830 -62544700 - L1MB5 LINE L1 -173 6005 5861 3 1032 251 282 119 30 chr12 58712981 58713149 -62544381 - Lx7 LINE L1 0 7696 7514 3 1032 5408 257 58 40 chr12 58713264 58714501 -62543029 - Lx7 LINE L1 -427 7269 5990 3 1032 969 193 0 0 chr12 58714501 58714651 -62542879 - B1_Mur4 SINE Alu 0 150 1 3 1032 5408 216 57 27 chr12 58714651 58715098 -62542432 - Lx7 LINE L1 -1707 5989 5552 3 1032 2105 223 47 11 chr12 58715101 58715632 -62541898 - L1_Mur3 LINE L1 -3463 2417 1868 3 1032 939 179 0 0 chr12 58715656 58715835 -62541695 + CT-rich Low_complexity Low_complexity 2 180 0 3 1032 1392 183 52 70 chr12 58715837 58716225 -62541305 - L1_Mur3 LINE L1 -4080 1800 1420 3 1032 207 0 0 0 chr12 58716777 58716800 -62540730 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1032 642 162 128 0 chr12 58716800 58716917 -62540613 - B1_Mur1 SINE Alu -13 136 5 3 1032 234 0 0 0 chr12 58716979 58717005 -62540525 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1032 1279 34 7 0 chr12 58717005 58717151 -62540379 - B1_Mm SINE Alu 0 147 1 3 1032 321 26 0 0 chr12 58717952 58717990 -62539540 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3 1032 552 15 0 0 chr12 58717990 58718055 -62539475 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1032 1111 180 146 73 chr12 58719656 58719931 -62537599 - Lx2B LINE L1 -208 6792 6498 3 1 248 294 115 35 chr12 58720175 58720288 -62537242 + L3 LINE CR1 3503 3624 -865 3 1033 274 196 217 38 chr12 58720304 58720410 -62537120 + L3 LINE CR1 3708 3832 -657 3 1033 180 0 0 0 chr12 58720973 58720993 -62536537 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1033 453 19 0 0 chr12 58721435 58721489 -62536041 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1033 1032 267 71 14 chr12 58721627 58721995 -62535535 - Lx6 LINE L1 -1 7459 7071 3 1033 472 298 47 23 chr12 58721995 58722167 -62535363 + B4A SINE B4 113 288 -4 3 1033 341 186 17 0 chr12 58722219 58722278 -62535252 + ID4 SINE ID 2 61 -22 3 1033 3400 86 17 19 chr12 58722299 58722774 -62534756 + L1_Mus3 LINE L1 6164 6637 -1 3 1033 775 226 108 0 chr12 58723126 58723321 -62534209 - B3 SINE B2 0 216 1 3 1033 374 262 41 8 chr12 58723726 58723849 -62533681 - Lx7 LINE L1 -23 7673 7547 3 1033 582 118 0 0 chr12 58723875 58723968 -62533562 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1033 225 0 0 0 chr12 58724831 58724856 -62532674 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1033 194 91 0 29 chr12 58725281 58725315 -62532215 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 3 1033 194 57 0 54 chr12 58725853 58725890 -62531640 + (CAAAC)n Simple_repeat Simple_repeat 1 35 0 3 1033 227 205 183 49 chr12 58727010 58727092 -62530438 + MIR SINE MIR 164 256 -6 3 1033 257 246 40 95 chr12 58728505 58728631 -62528899 - MER106B DNA MER1_type -8 1051 933 3 1033 289 200 17 0 chr12 58729363 58729423 -62528107 - ID4 SINE ID -9 74 14 3 1033 246 312 16 0 chr12 58730104 58730168 -62527362 - ID4 SINE ID -2 81 17 3 1033 269 268 127 51 chr12 58730182 58730300 -62527230 - B1_Mur2 SINE Alu 0 149 23 3 1033 441 0 0 0 chr12 58730629 58730678 -62526852 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1033 498 125 0 0 chr12 58730685 58730765 -62526765 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 1033 245 158 0 0 chr12 58730805 58730843 -62526687 - ORR1B2 LTR MaLR 0 367 330 3 1033 191 61 30 0 chr12 58730843 58730876 -62526654 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1033 220 204 111 0 chr12 58730886 58730940 -62526590 - ID4_ SINE ID -14 69 10 3 1033 946 214 77 0 chr12 58730962 58731158 -62526372 + B3 SINE B2 2 212 -4 3 1033 523 246 45 0 chr12 58731431 58731565 -62525965 - B1F SINE Alu -9 140 1 3 1033 582 226 130 110 chr12 58731982 58732236 -62525294 - MTEa LTR MaLR -2 377 119 3 1033 716 332 30 10 chr12 58732837 58732862 -62524668 - B4 SINE B4 -6 286 262 3 1033 414 121 0 0 chr12 58732862 58732928 -62524602 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1033 716 332 30 10 chr12 58732928 58733100 -62524430 - B4 SINE B4 -31 261 86 3 1033 582 212 34 0 chr12 58733198 58733316 -62524214 + B3A SINE B2 38 159 -39 3 1033 265 342 45 27 chr12 58734024 58734135 -62523395 + RMER12 LTR ERVK 739 851 -471 3 1033 688 277 48 0 chr12 58734161 58734327 -62523203 - B3A SINE B2 -24 174 1 3 1033 180 318 96 29 chr12 58734327 58734463 -62523067 + L2 LINE L2 2191 2335 -1084 3 1033 535 292 22 0 chr12 58734516 58734653 -62522877 - MTEa LTR MaLR -239 140 1 3 1033 263 341 103 7 chr12 58735867 58736003 -62521527 - MIRm SINE MIR -124 152 4 3 1033 22 0 0 0 chr12 58736243 58736265 -62521265 + AT_rich Low_complexity Low_complexity 1 22 0 3 1033 744 114 15 8 chr12 58736312 58736445 -62521085 - L1_Mus3 LINE L1 -2 6636 6503 3 1033 680 110 0 0 chr12 58736446 58736546 -62520984 + L1_Mm LINE L1 4480 4579 -1304 3 1033 4456 52 0 14 chr12 58736618 58737180 -62520350 - L1Md_F2 LINE L1 0 6582 6029 3 1033 3014 67 3 3 chr12 58737219 58737611 -62519919 - MTB LTR MaLR -8 392 1 3 1033 1009 225 5 20 chr12 58738012 58738216 -62519314 - B3 SINE B2 0 216 16 3 1033 307 60 40 0 chr12 58738446 58738496 -62519034 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1033 261 229 0 16 chr12 58739528 58739590 -62517940 - MLT1A1 LTR MaLR 0 408 348 3 1033 200 198 158 70 chr12 58740169 58740283 -62517247 - MER5A DNA MER1_type 0 189 66 3 1033 2553 40 6 6 chr12 58740433 58740758 -62516772 - IAPEY2_LTR LTR ERVK 0 357 33 3 1033 537 266 68 31 chr12 58742906 58743000 -62514530 - RLTR20C LTR ERVK -5 546 458 3 1033 504 0 0 0 chr12 58743000 58743056 -62514474 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1033 980 216 94 34 chr12 58743056 58743404 -62514126 - RLTR20C LTR ERVK -94 457 1 3 1033 904 193 96 25 chr12 58743566 58743763 -62513767 - B3 SINE B2 -5 211 1 3 1033 949 79 7 7 chr12 58744189 58744330 -62513200 + (TCTA)n Simple_repeat Simple_repeat 4 144 0 3 1033 783 178 0 8 chr12 58744343 58744473 -62513057 - B3 SINE B2 -87 129 1 3 1033 282 333 42 0 chr12 58744512 58744632 -62512898 - Charlie1a DNA MER1_type -5 1450 1326 3 1033 296 315 11 24 chr12 58744700 58744813 -62512717 - PB1D7 SINE Alu -1 119 7 3 1033 652 264 106 18 chr12 58744821 58745095 -62512435 - Charlie1a DNA MER1_type -215 1240 943 3 1033 409 325 67 19 chr12 58745102 58745312 -62512218 + L1MDa LINE L1 50 269 -6364 3 1033 269 26 26 0 chr12 58745315 58745353 -62512177 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1033 239 169 44 44 chr12 58746176 58746244 -62511286 + L1MDa LINE L1 1002 1069 -5564 3 1033 511 290 111 28 chr12 58746283 58746464 -62511066 + B3A SINE B2 2 197 -1 3 1033 18110 87 5 1 chr12 58746499 58749196 -62508334 - L1_Mur1 LINE L1 -1779 4107 1400 3 1033 28 0 0 0 chr12 58749234 58749262 -62508268 + AT_rich Low_complexity Low_complexity 1 28 0 3 1033 791 284 124 24 chr12 58749269 58749688 -62507842 - L1MC3 LINE L1 -1146 6639 6179 3 1033 223 239 15 15 chr12 58750667 58750735 -62506795 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1033 271 209 11 34 chr12 58751293 58751382 -62506148 - L1_Mur1 LINE L1 -2343 3543 3457 3 1033 578 272 90 61 chr12 58751419 58751763 -62505767 + Lx8 LINE L1 7109 7462 -11 3 1033 189 255 58 19 chr12 58753134 58753186 -62504344 + MIR SINE MIR 21 74 -188 3 1033 207 209 0 0 chr12 58753571 58753614 -62503916 + T-rich Low_complexity Low_complexity 1 43 0 3 1033 318 270 71 127 chr12 58753652 58753919 -62503611 - ORR1E LTR MaLR -105 254 3 3 1033 2177 170 32 25 chr12 58754424 58754828 -62502702 + MTC LTR MaLR 7 413 -8 3 1033 1142 58 0 0 chr12 58755391 58755529 -62502001 + B1_Mus2 SINE Alu 1 138 -9 3 1033 35 0 0 0 chr12 58755709 58755744 -62501786 + AT_rich Low_complexity Low_complexity 1 35 0 3 1033 221 0 0 33 chr12 58756196 58756226 -62501304 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 1033 1454 40 0 0 chr12 58756228 58756401 -62501129 - L1_Mus1 LINE L1 -6 6561 6389 3 1033 2151 34 4 0 chr12 58756402 58756669 -62500861 + L1_Mus1 LINE L1 6113 6380 -187 3 1033 733 300 56 39 chr12 58757704 58758061 -62499469 + Lx8 LINE L1 7102 7464 -9 3 1033 4355 67 7 21 chr12 58758147 58758730 -62498800 + L1Md_F2 LINE L1 5996 6570 -12 3 1033 690 298 127 25 chr12 58759377 58760093 -62497437 + L1M2 LINE L1 4419 5157 -690 3 1033 426 20 0 0 chr12 58760093 58760144 -62497386 + (TAA)n Simple_repeat Simple_repeat 2 52 0 3 1033 324 293 137 27 chr12 58760144 58760202 -62497328 + L1M2 LINE L1 5158 5216 -631 3 1033 182 136 23 0 chr12 58760258 58760302 -62497228 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 3 1033 1163 285 51 36 chr12 58760305 58760923 -62496607 + L1MA5 LINE L1 5293 5917 -383 3 1033 384 22 0 0 chr12 58761156 58761201 -62496329 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1033 365 232 14 58 chr12 58763017 58763191 -62494339 + L1M2 LINE L1 5702 5936 -364 3 1033 260 276 155 16 chr12 58763899 58764049 -62493481 + MIR3 SINE MIR 22 187 -21 4 1033 993 72 0 106 chr12 58764552 58764722 -62492808 + L1_Mus2 LINE L1 6414 6565 -1 4 1033 252 0 0 0 chr12 58765002 58765030 -62492500 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1033 285 346 107 66 chr12 58765386 58765900 -62491630 - L2b LINE L2 -2 3424 2889 4 1033 629 318 94 45 chr12 58765937 58766204 -62491326 + B4A SINE B4 1 280 -12 4 1033 682 312 80 54 chr12 58766374 58766723 -62490807 - L2b LINE L2 -579 2840 2483 4 1033 1775 146 71 2 chr12 58766859 58767158 -62490372 + ORR1A2 LTR MaLR 1 312 -15 4 1033 1130 63 65 65 chr12 58767720 58767906 -62489624 + B2_Mm2 SINE B2 1 186 -9 4 1033 8181 19 0 0 chr12 58768630 58770164 -62487366 - L1Md_T LINE L1 0 6582 5049 4 1033 473 323 84 12 chr12 58770186 58770352 -62487178 + MER5A DNA MER1_type 5 182 -7 4 1033 1486 254 39 65 chr12 58770769 58770844 -62486686 + Lx7 LINE L1 6818 6892 -804 4 1033 837 0 0 0 chr12 58770844 58770937 -62486593 + (GA)n Simple_repeat Simple_repeat 2 94 0 4 1033 1486 254 39 65 chr12 58770937 58771426 -62486104 + Lx7 LINE L1 6893 7367 -329 4 1033 653 36 0 12 chr12 58771691 58771776 -62485754 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 4 1033 4116 66 0 0 chr12 58771799 58772312 -62485218 - L1_Mus1 LINE L1 -3 6564 6052 4 1033 2278 151 30 23 chr12 58772778 58773171 -62484359 - MTC LTR MaLR 0 421 26 4 1033 24 32 0 0 chr12 58773880 58773911 -62483619 + AT_rich Low_complexity Low_complexity 1 31 0 4 1033 184 189 54 0 chr12 58775189 58775226 -62482304 + L2c LINE L2 3306 3344 -43 4 1033 635 285 64 11 chr12 58775821 58776009 -62481521 - B3 SINE B2 -11 205 8 4 1033 564 89 283 6 chr12 58776819 58776863 -62480667 + Lx9 LINE L1 7434 7485 -159 4 1033 375 60 0 0 chr12 58776863 58776913 -62480617 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1033 564 89 283 6 chr12 58776913 58777027 -62480503 + Lx9 LINE L1 7486 7636 -8 4 1033 616 143 26 39 chr12 58777427 58777561 -62479969 - Lx9 LINE L1 0 7644 7510 4 1033 294 29 0 0 chr12 58777561 58777596 -62479934 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1033 616 143 26 39 chr12 58777596 58777614 -62479916 - Lx9 LINE L1 -135 7509 7494 4 1033 745 214 107 0 chr12 58777656 58777862 -62479668 - Lx9 LINE L1 -240 7404 7177 4 1033 5401 230 46 60 chr12 58778595 58779178 -62478352 - Lx7 LINE L1 0 7696 7168 4 1033 270 0 0 0 chr12 58779178 58779208 -62478322 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1033 5401 230 46 60 chr12 58779208 58780165 -62477365 - Lx7 LINE L1 -529 7167 6179 4 1033 24 0 0 0 chr12 58780232 58780256 -62477274 + AT_rich Low_complexity Low_complexity 1 24 0 4 1033 2398 185 52 22 chr12 58780307 58781090 -62476440 - Lx7 LINE L1 -1534 6162 5357 4 1033 465 66 0 0 chr12 58781090 58781151 -62476379 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 4 1033 7845 147 15 14 chr12 58781153 58783548 -62473982 - Lx3C LINE L1 -18 6958 4559 4 1033 589 125 0 59 chr12 58783548 58783667 -62473863 + Lx2 LINE L1 6885 6996 -1 4 1033 4099 149 120 16 chr12 58783684 58784773 -62472757 - Lx3C LINE L1 -4275 1602 389 4 1033 4650 91 58 0 chr12 58785180 58785837 -62471693 + Lx LINE L1 5959 6653 -1 4 1033 414 142 58 50 chr12 58785885 58786005 -62471525 - B1_Mur1 SINE Alu -6 143 26 4 1033 968 221 74 55 chr12 58785959 58786477 -62471053 - RMER13B LTR ERVK -4 904 1 4 1033 330 205 58 35 chr12 58786477 58786535 -62470995 - B1F2 SINE Alu -89 60 1 4 1033 504 302 73 44 chr12 58787608 58787850 -62469680 - B4 SINE B4 -47 245 2 4 1033 269 367 17 10 chr12 58788375 58788536 -62468994 - MIR SINE MIR -1 261 105 4 1033 320 164 0 15 chr12 58788706 58788774 -62468756 + GA-rich Low_complexity Low_complexity 3 69 0 4 1033 190 319 61 50 chr12 58789184 58789283 -62468247 + MIR SINE MIR 53 152 -56 4 1033 198 91 0 0 chr12 58789679 58789712 -62467818 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1033 186 143 0 0 chr12 58790159 58790194 -62467336 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1033 403 153 24 0 chr12 58790410 58790495 -62467035 - Lx7 LINE L1 0 7696 7610 4 1033 281 26 26 0 chr12 58791264 58791302 -62466228 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1033 450 0 0 0 chr12 58791344 58791394 -62466136 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 4 1033 181 389 72 43 chr12 58791480 58791687 -62465843 + L2 LINE L2 2656 2868 -551 4 1033 342 0 0 0 chr12 58792300 58792338 -62465192 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1033 459 0 0 0 chr12 58792338 58792388 -62465142 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1033 809 215 9 78 chr12 58792424 58792656 -62464874 - Lx5 LINE L1 0 7050 6835 4 1033 274 301 75 0 chr12 58792969 58793062 -62464468 + MTEb LTR MaLR 255 354 -25 4 1033 401 271 23 0 chr12 58793079 58793182 -62464348 + ORR1E-int LTR MaLR 1422 1527 -53 4 1033 1032 308 25 52 chr12 58793182 58793545 -62463985 + ORR1E LTR MaLR 1 353 -6 4 1033 4132 149 31 6 chr12 58793860 58794535 -62462995 - RLTR17 LTR ERVK 0 692 1 4 1033 423 0 0 0 chr12 58795084 58795131 -62462399 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1033 343 198 57 16 chr12 58795131 58795254 -62462276 + Lx9 LINE L1 7516 7643 -1 4 1033 22 0 0 0 chr12 58795885 58795907 -62461623 + AT_rich Low_complexity Low_complexity 1 22 0 4 1033 263 218 36 0 chr12 58796106 58796161 -62461369 + PB1D9 SINE Alu 2 58 -62 4 1033 764 176 4 21 chr12 58796190 58796475 -62461055 + GA-rich Low_complexity Low_complexity 1 279 0 4 1033 944 129 0 11 chr12 58796477 58796657 -62460873 + (GA)n Simple_repeat Simple_repeat 2 179 0 4 1033 444 167 0 0 chr12 58796659 58796755 -62460775 + GA-rich Low_complexity Low_complexity 2 97 0 4 1033 1620 0 0 0 chr12 58796762 58797027 -62460503 + (GA)n Simple_repeat Simple_repeat 1 265 0 4 1033 557 213 0 0 chr12 58797036 58797144 -62460386 + B1_Mur2 SINE Alu 42 149 0 4 1033 234 0 0 0 chr12 58797170 58797196 -62460334 + (TTTAA)n Simple_repeat Simple_repeat 1 26 0 4 1033 449 308 146 9 chr12 58797294 58797507 -62460023 + Lx8 LINE L1 6921 7162 -311 4 1033 447 107 0 0 chr12 58798048 58798123 -62459407 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1033 2561 128 31 0 chr12 58798587 58798969 -62458561 - ORR1B1 LTR MaLR 0 394 1 4 1033 195 42 0 0 chr12 58799070 58799094 -62458436 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 4 1033 207 216 0 0 chr12 58799206 58799243 -62458287 + L3 LINE CR1 834 870 -3619 4 1033 201 74 0 0 chr12 58799428 58799455 -62458075 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1033 180 0 0 0 chr12 58800251 58800271 -62457259 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1033 180 0 0 0 chr12 58800302 58800322 -62457208 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1033 6481 130 57 7 chr12 58800322 58801367 -62456163 - Lx4A LINE L1 0 7058 5961 4 1033 589 305 128 75 chr12 58801877 58802253 -62455277 + MLT1E1A LTR MaLR 285 680 0 4 1033 246 139 44 53 chr12 58802324 58802438 -62455092 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 4 1033 1091 265 113 27 chr12 58803381 58803753 -62453777 - Lx6 LINE L1 -30 7430 7027 4 1033 1711 282 61 49 chr12 58803760 58804531 -62452999 + Lx5 LINE L1 5836 6615 -435 4 1033 191 188 34 34 chr12 58805676 58805764 -62451766 + CT-rich Low_complexity Low_complexity 2 89 0 4 1033 334 372 58 0 chr12 58805783 58805869 -62451661 - ID_B1 SINE B4 -51 173 83 4 1033 791 237 37 33 chr12 58807337 58807551 -62449979 - B3 SINE B2 0 216 2 4 1033 24 53 0 0 chr12 58809529 58809567 -62447963 + AT_rich Low_complexity Low_complexity 1 38 0 4 1033 928 202 43 24 chr12 58810414 58810622 -62446908 - B3 SINE B2 -1 215 4 4 1033 262 319 68 61 chr12 58810880 58811027 -62446503 + B1F1 SINE Alu 2 149 0 4 1033 210 71 0 0 chr12 58811271 58811299 -62446231 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1033 253 333 63 28 chr12 58811707 58811849 -62445681 - L2b LINE L2 -1 3374 3228 4 1033 459 347 83 59 chr12 58813141 58813634 -62443896 + L2 LINE L2 2560 3064 -355 4 1033 355 323 107 31 chr12 58813708 58813932 -62443598 + L1MEf LINE L1 1963 2203 -3997 4 1033 477 0 0 0 chr12 58814143 58814196 -62443334 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1033 288 0 0 0 chr12 58816605 58816637 -62440893 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1033 957 116 19 0 chr12 58817206 58817361 -62440169 - L1_Mus3 LINE L1 -5 6633 6476 4 1033 517 301 15 54 chr12 58818525 58818729 -62438801 - B3A SINE B2 -1 197 2 4 1033 23 0 0 0 chr12 58818846 58818869 -62438661 + AT_rich Low_complexity Low_complexity 1 23 0 4 1033 5454 42 0 0 chr12 58818962 58819613 -62437917 - L1Md_T LINE L1 0 6582 5932 4 1033 34966 38 12 12 chr12 58819640 58821289 -62436241 - L1Md_T LINE L1 0 6582 4914 4 1033 240 167 46 77 chr12 58821289 58821354 -62436176 + RMER20A LTR ERVK 186 248 -268 4 1033 34966 38 12 12 chr12 58821354 58825019 -62432511 - L1Md_T LINE L1 0 4913 1203 4 1033 6425 54 0 18 chr12 58824985 58825859 -62431671 - L1Md_Gf LINE L1 -5380 1142 285 4 1033 575 237 71 19 chr12 58826168 58826323 -62431207 - RSINE1 SINE B4 0 165 3 4 1033 31 76 0 0 chr12 58826384 58826450 -62431080 + AT_rich Low_complexity Low_complexity 1 66 0 4 1033 284 283 34 34 chr12 58826997 58827114 -62430416 + MamRep605 Unknown Unknown 52 168 -708 4 1033 2243 143 28 25 chr12 58828520 58828913 -62428617 - ORR1B1 LTR MaLR 0 394 1 4 1033 593 27 13 0 chr12 58828929 58829004 -62428526 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 4 1033 234 0 0 0 chr12 58829017 58829043 -62428487 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1033 565 236 0 0 chr12 58829049 58829159 -62428371 - PB1D9 SINE Alu -10 110 1 4 1033 6672 42 4 14 chr12 58831605 58832436 -62425094 - L1Md_F3 LINE L1 0 6584 5763 4 1033 26665 26 0 0 chr12 58832757 58836753 -62420777 - L1Md_T LINE L1 -3 6579 2584 4 1033 22 0 0 0 chr12 58839386 58839408 -62418122 + AT_rich Low_complexity Low_complexity 1 22 0 4 1033 302 314 49 16 chr12 58839453 58839478 -62418052 - ID_B1 SINE B4 -11 213 87 4 1033 389 266 10 41 chr12 58839478 58839576 -62417954 - PB1D10 SINE Alu -17 100 6 5 1033 8782 125 19 9 chr12 58839614 58841956 -62415574 - Lx4A LINE L1 0 7058 4687 5 1033 686 286 85 38 chr12 58842683 58842894 -62414636 + MTEa LTR MaLR 152 372 -7 5 1033 2411 283 67 58 chr12 58842901 58843738 -62413792 + MTEa-int LTR MaLR 1 844 -736 5 1033 180 0 0 0 chr12 58843747 58843767 -62413763 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1033 4684 93 22 23 chr12 58843771 58844464 -62413066 - L1_Mus3 LINE L1 -14 6624 5933 5 1033 6959 117 2 20 chr12 58844480 58845629 -62411901 + L1_Mm LINE L1 4021 5148 -735 5 1033 303 364 60 37 chr12 58845630 58845764 -62411766 + MTEa-int LTR MaLR 840 976 -604 5 1033 16642 26 1 4 chr12 58845767 58847829 -62409701 - MMETn-int LTR ERVK -2788 2056 1 5 1033 2802 28 0 0 chr12 58847829 58848151 -62409379 - RLTRETN_Mm LTR ERVK 0 322 1 5 1033 749 242 92 30 chr12 58848155 58848483 -62409047 + L1_Rod LINE L1 4122 4469 -1378 5 1033 4380 205 128 65 chr12 58848514 58850127 -62407403 + Lx9 LINE L1 5482 7239 -405 5 1033 414 228 0 0 chr12 58850127 58850228 -62407302 + (CA)n Simple_repeat Simple_repeat 1 101 0 5 1033 500 191 30 41 chr12 58850228 58850397 -62407133 + Lx9 LINE L1 7477 7643 -1 5 1033 1100 75 14 14 chr12 58850445 58850593 -62406937 - B1_Mus1 SINE Alu 0 148 1 5 1033 27 0 0 0 chr12 58850887 58850914 -62406616 + AT_rich Low_complexity Low_complexity 1 27 0 5 129 2081 139 23 15 chr12 58851165 58851508 -62406022 - ORR1A1 LTR MaLR 0 346 1 5 1034 7058 118 24 14 chr12 58851508 58853019 -62404511 - ORR1A1-int LTR MaLR 0 1963 1 5 1034 882 95 14 62 chr12 58853023 58853067 -62404463 - ORR1A1 LTR MaLR -8 321 280 5 1034 4474 40 0 0 chr12 58853067 58853595 -62403935 - L1Md_F2 LINE L1 0 6582 6055 5 1034 882 95 14 62 chr12 58853595 58853696 -62403834 - ORR1A1 LTR MaLR -50 279 183 5 1034 1416 230 134 3 chr12 58854147 58854535 -62402995 - Lx6 LINE L1 -221 7239 6801 5 1034 510 17 0 0 chr12 58854548 58854607 -62402923 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1034 282 29 0 0 chr12 58854684 58854719 -62402811 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1034 932 52 0 0 chr12 58854719 58854835 -62402695 - B1_Mus1 SINE Alu -9 139 24 5 1034 452 74 0 0 chr12 58854873 58854939 -62402591 + L1_Mm LINE L1 5478 5572 -552 5 1034 7590 136 42 34 chr12 58854999 58855112 -62402418 - Lx2B LINE L1 -3 6997 6883 5 1034 189 0 0 0 chr12 58855112 58855133 -62402397 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 5 1034 7590 136 42 34 chr12 58855133 58856140 -62401390 - Lx2B LINE L1 -118 6882 5876 5 1034 297 0 0 0 chr12 58856140 58856173 -62401357 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1034 7590 152 32 30 chr12 58856173 58857597 -62399933 - Lx2B LINE L1 -1125 5875 4435 5 1034 22 0 0 0 chr12 58857666 58857688 -62399842 + AT_rich Low_complexity Low_complexity 1 22 0 5 1034 257 39 0 73 chr12 58857875 58857930 -62399600 + (CAAAAA)n Simple_repeat Simple_repeat 3 53 0 5 1034 342 283 87 33 chr12 58857937 58858087 -62399443 - ORR1E LTR MaLR -138 221 64 5 1034 263 273 0 108 chr12 58858112 58858186 -62399344 - MLT1A1 LTR MaLR -278 130 65 5 1034 234 208 0 0 chr12 58858188 58858236 -62399294 + MTE-int LTR MaLR 324 371 -1209 5 1034 1928 289 78 15 chr12 58858225 58858813 -62398717 + MTE-int LTR MaLR 486 1110 -470 5 1034 236 109 196 0 chr12 58858813 58858859 -62398671 + MT2A LTR ERVL 4 58 -475 5 1034 1341 134 4 30 chr12 58858909 58859139 -62398391 - Lx2 LINE L1 -8 6989 6766 5 1034 736 184 0 42 chr12 58859140 58859282 -62398248 - Lx2 LINE L1 -363 6634 6499 5 1034 4472 87 28 69 chr12 58859266 58860052 -62397478 + Lx2 LINE L1 5710 6463 -534 5 1034 392 226 0 23 chr12 58860052 58860138 -62397392 + MT2A LTR ERVL 50 133 -400 5 1034 1100 219 49 9 chr12 58860131 58860476 -62397054 + MT2A LTR ERVL 92 533 0 5 1034 1487 252 124 14 chr12 58860478 58860905 -62396625 + MTE-int LTR MaLR 1105 1578 -2 5 1034 1119 227 39 18 chr12 58860948 58861177 -62396353 + MTE2b LTR MaLR 146 379 0 5 1034 294 308 88 61 chr12 58861283 58861397 -62396133 - Tigger5 DNA MER2_type -2289 117 1 5 1034 226 286 68 32 chr12 58861582 58861694 -62395836 - MIR SINE MIR -108 160 47 5 1034 815 179 0 28 chr12 58862622 58862766 -62394764 + B1_Mur1 SINE Alu 9 148 -1 5 1034 180 0 0 0 chr12 58863890 58863910 -62393620 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 5 1034 315 0 0 0 chr12 58866097 58866132 -62391398 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1034 468 0 0 0 chr12 58866292 58866344 -62391186 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 5 1034 238 184 61 0 chr12 58866344 58866385 -62391145 - PB1D7 SINE Alu -11 109 66 5 1034 588 279 0 0 chr12 58866385 58866473 -62391057 - ID_B1 SINE B4 -12 212 84 5 1034 307 298 12 0 chr12 58867001 58867085 -62390445 + MIRc SINE MIR 145 229 -39 5 1034 228 67 0 0 chr12 58867298 58867328 -62390202 + (TTA)n Simple_repeat Simple_repeat 3 32 0 5 1034 665 20 30 10 chr12 58867793 58867893 -62389637 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 5 1034 630 39 0 0 chr12 58868841 58868918 -62388612 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 5 1034 2215 119 0 0 chr12 58868930 58869248 -62388282 - ORR1A3 LTR MaLR -8 318 1 5 1034 300 324 86 54 chr12 58869472 58869658 -62387872 + L1ME3B LINE L1 5793 5984 -256 5 1034 215 229 65 16 chr12 58870332 58870349 -62387181 + PB1D9 SINE Alu 50 114 -6 5 1034 251 222 0 0 chr12 58870349 58870394 -62387136 + ID_B1 SINE B4 174 218 -6 5 1034 1277 86 75 10 chr12 58870404 58870604 -62386926 + Lx LINE L1 6439 6651 -3 5 1034 327 316 127 54 chr12 58870840 58871154 -62386376 + L1ME4a LINE L1 5511 5847 -277 5 1034 816 210 33 48 chr12 58871887 58872097 -62385433 + B3 SINE B2 1 207 -9 5 1034 425 19 19 0 chr12 58872452 58872506 -62385024 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1034 400 224 116 41 chr12 58872521 58872642 -62384888 - RSINE1 SINE B4 -34 131 2 5 1034 34 0 0 0 chr12 58872908 58872942 -62384588 + AT_rich Low_complexity Low_complexity 1 34 0 5 1034 234 105 0 0 chr12 58872991 58873029 -62384501 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 5 1034 31 0 0 0 chr12 58874144 58874175 -62383355 + AT_rich Low_complexity Low_complexity 1 31 0 5 1034 232 326 32 0 chr12 58874211 58874306 -62383224 - RSINE1 SINE B4 -15 150 53 5 1034 414 0 0 0 chr12 58875089 58875135 -62382395 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1034 233 143 184 0 chr12 58875844 58875893 -62381637 - PB1D10 SINE Alu -17 100 43 5 1034 1393 180 46 0 chr12 58876572 58876833 -62380697 - RMER15 LTR ERVL -154 421 149 5 1034 1323 174 9 0 chr12 58876835 58877053 -62380477 - RLTR17 LTR ERVK -270 422 203 5 1034 28 29 0 0 chr12 58878723 58878758 -62378772 + AT_rich Low_complexity Low_complexity 1 35 0 5 1034 264 149 0 0 chr12 58879343 58879390 -62378140 + (TTA)n Simple_repeat Simple_repeat 3 49 0 5 1034 449 154 11 0 chr12 58880558 58880649 -62376881 + CT-rich Low_complexity Low_complexity 1 92 0 5 1034 271 279 169 0 chr12 58880655 58880734 -62376796 - B1F SINE Alu -10 139 53 5 1034 1107 23 0 0 chr12 58880734 58880864 -62376666 + (TTCTC)n Simple_repeat Simple_repeat 3 132 0 5 1034 222 264 231 0 chr12 58880864 58880901 -62376629 - PB1D10 SINE Alu -65 52 3 5 1034 27 0 0 0 chr12 58881047 58881074 -62376456 + AT_rich Low_complexity Low_complexity 1 27 0 5 1034 202 306 117 0 chr12 58881161 58881272 -62376258 - MIR SINE MIR -55 207 84 5 1034 976 278 141 14 chr12 58881509 58881943 -62375587 + Lx9 LINE L1 6642 7130 -514 5 1034 3625 36 2 5 chr12 58883319 58883763 -62373767 - L1Md_F2 LINE L1 -10 6572 6130 5 1034 277 236 94 59 chr12 58883907 58884110 -62373420 - RMER17D LTR ERVK -481 408 199 5 1034 223 343 27 54 chr12 58884337 58884485 -62373045 - L2a LINE L2 0 3426 3283 5 1034 24 0 0 0 chr12 58885144 58885168 -62372362 + AT_rich Low_complexity Low_complexity 1 24 0 5 1034 1073 71 43 0 chr12 58885493 58885626 -62371904 + B1_Mus1 SINE Alu 1 139 -9 5 1034 270 21 42 21 chr12 58885626 58885674 -62371856 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1034 1623 16 0 5 chr12 58885831 58886018 -62371512 + B2_Mm1a SINE B2 2 187 -6 5 1034 292 153 69 0 chr12 58886780 58886852 -62370678 - Lx9 LINE L1 -2 7642 7566 5 1034 876 46 0 0 chr12 58886854 58886963 -62370567 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 1034 1991 208 60 22 chr12 58886963 58887509 -62370021 - Lx9 LINE L1 -182 7462 6896 5 1034 443 245 431 9 chr12 58887763 58888004 -62369526 + ORR1E LTR MaLR 1 342 -37 5 1034 279 290 49 20 chr12 58888886 58888988 -62368542 + MER5A1 DNA MER1_type 62 166 0 5 1034 1009 202 19 33 chr12 58889209 58889419 -62368111 + B3 SINE B2 1 207 -9 5 1034 396 0 0 0 chr12 58890009 58890053 -62367477 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1034 414 0 0 0 chr12 58890898 58890944 -62366586 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1034 270 0 0 0 chr12 58892242 58892272 -62365258 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1034 396 204 102 0 chr12 58892300 58892408 -62365122 - L1MCa LINE L1 -4933 1575 1457 5 1034 186 143 0 0 chr12 58892426 58892461 -62365069 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 5 1034 1094 273 15 0 chr12 58892596 58892863 -62364667 - Lx9 LINE L1 -894 6750 6480 5 1034 323 302 167 6 chr12 58892888 58892965 -62364565 - L1MCa LINE L1 -6077 431 333 5 1034 2458 216 31 31 chr12 58892965 58893575 -62363955 - RMER19C LTR ERVK -1 610 1 5 1034 323 302 167 6 chr12 58893575 58893677 -62363853 - L1MCa LINE L1 -6176 332 224 5 1034 424 274 98 15 chr12 58894408 58894612 -62362918 + Charlie5 DNA MER1_type 2404 2624 0 5 1034 321 26 0 0 chr12 58894644 58894682 -62362848 + (TATG)n Simple_repeat Simple_repeat 2 39 0 5 1034 258 32 0 0 chr12 58895135 58895166 -62362364 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1034 1163 54 0 20 chr12 58896025 58896161 -62361369 + B1_Mm SINE Alu 1 136 -11 5 1034 297 0 0 0 chr12 58896161 58896194 -62361336 + (CAA)n Simple_repeat Simple_repeat 2 34 0 5 1034 1163 54 0 20 chr12 58896194 58896207 -62361323 + B1_Mm SINE Alu 137 147 0 5 1034 246 318 5 241 chr12 58896276 58896475 -62361055 + MTEa LTR MaLR 199 350 -29 5 1034 456 234 75 101 chr12 58896495 58896723 -62360807 - RLTR11B LTR ERVK -15 438 217 5 1034 838 215 54 85 chr12 58896710 58897000 -62360530 - RLTR11B LTR ERVK -138 303 7 5 1034 201 235 20 0 chr12 58897067 58897118 -62360412 - L4 LINE RTE -301 1728 1677 5 1034 5126 123 45 7 chr12 58897146 58897954 -62359576 + Lx4A LINE L1 6216 7053 -5 5 1034 446 0 19 0 chr12 58897956 58898010 -62359520 + (TAA)n Simple_repeat Simple_repeat 2 56 0 5 1034 253 273 43 54 chr12 58898148 58898241 -62359289 - B3 SINE B2 -3 213 122 5 1034 180 318 0 31 chr12 58898441 58898506 -62359024 - MER5A DNA MER1_type -82 107 45 5 1034 292 269 45 55 chr12 58898687 58898797 -62358733 + MLT1A1 LTR MaLR 300 408 0 5 1034 3592 66 2 15 chr12 58899301 58899777 -62357753 - L1Md_F2 LINE L1 -4 6578 6109 6 1034 4860 52 1 1 chr12 58899777 58900627 -62356903 + L1Md_F2 LINE L1 5241 6090 -492 6 1034 336 336 170 18 chr12 58901421 58901645 -62355885 - L2a LINE L2 -24 3402 3145 6 1034 675 296 97 68 chr12 58901983 58902291 -62355239 - ORR1E LTR MaLR 0 359 43 6 1034 30305 74 24 16 chr12 58902795 58907911 -62349619 + L1Md_F2 LINE L1 436 5586 -297 6 1034 8054 54 0 1 chr12 58907911 58908906 -62348624 + L1Md_F2 LINE L1 5587 6580 -2 6 1034 2304 82 3 22 chr12 58909037 58909360 -62348170 - L1_Mus2 LINE L1 0 6566 6250 6 1034 651 81 0 0 chr12 58911730 58911829 -62345701 + (CA)n Simple_repeat Simple_repeat 2 100 0 6 1034 382 266 142 20 chr12 58912028 58912265 -62345265 + MER57E1 LTR ERV1 4 297 -75 6 1034 1529 231 49 9 chr12 58912641 58912986 -62344544 - MTE2b LTR MaLR -1 378 20 6 1034 23 54 0 0 chr12 58913024 58913061 -62344469 + AT_rich Low_complexity Low_complexity 1 37 0 6 1034 311 278 107 47 chr12 58913234 58913468 -62344062 + Charlie10 DNA MER1_type 2474 2721 -101 6 1034 423 219 11 0 chr12 58913793 58913899 -62343631 + Lx9 LINE L1 5626 5786 -403 6 1034 830 94 23 0 chr12 58913899 58914027 -62343503 + (TATATG)n Simple_repeat Simple_repeat 3 133 0 6 1034 1373 222 49 28 chr12 58914027 58914439 -62343091 + Lx9 LINE L1 5770 6304 -1340 6 1034 264 30 0 0 chr12 58914439 58914472 -62343058 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1034 1373 237 146 32 chr12 58914472 58914768 -62342762 + Lx9 LINE L1 6305 6610 -1034 6 1034 1656 183 72 10 chr12 58914762 58915165 -62342365 + Lx9 LINE L1 7215 7642 -2 6 1034 456 272 47 65 chr12 58915307 58915476 -62342054 + MTD LTR MaLR 254 419 0 6 1034 1881 207 34 37 chr12 58915432 58915839 -62341691 - MTD LTR MaLR 0 419 14 6 1034 230 281 35 58 chr12 58915942 58916029 -62341501 + LTR33A LTR ERVL 436 520 0 6 1034 201 74 0 0 chr12 58916741 58916768 -62340762 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1034 39518 4 0 0 chr12 58916784 58923152 -62334378 - L1Md_A LINE L1 0 6582 214 6 1034 405 0 0 0 chr12 58923397 58923442 -62334088 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1034 515 307 0 35 chr12 58924281 58924453 -62333077 + MLT1A1 LTR MaLR 241 406 -2 6 1034 1688 249 22 3 chr12 58926046 58926401 -62331129 + ORR1D2 LTR MaLR 1 362 -8 6 1034 195 292 72 122 chr12 58927305 58927527 -62330003 + L2c LINE L2 3052 3262 -125 6 1034 1218 285 8 80 chr12 58927984 58928373 -62329157 - MTE2a LTR MaLR 0 379 19 6 1034 543 174 111 27 chr12 58928579 58928708 -62328822 + B1_Mur3 SINE Alu 1 136 -13 6 1034 563 149 0 8 chr12 58928708 58928830 -62328700 + GA-rich Low_complexity Low_complexity 2 122 0 6 1034 334 317 138 62 chr12 58929805 58930861 -62326669 + L1MC4a LINE L1 6613 7749 -133 6 1034 389 345 44 29 chr12 58930991 58931197 -62326333 + L1ME3 LINE L1 5185 5393 -753 6 1034 261 57 0 0 chr12 58931383 58931418 -62326112 + (CAAAC)n Simple_repeat Simple_repeat 5 39 0 6 1034 599 303 84 29 chr12 58931552 58931861 -62325669 + Lx8 LINE L1 7131 7456 -17 6 1034 449 322 58 10 chr12 58931934 58932141 -62325389 + L1ME3 LINE L1 5882 6098 -64 6 1034 306 0 0 0 chr12 58932272 58932306 -62325224 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1034 486 0 0 0 chr12 58932306 58932359 -62325171 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1034 423 0 0 0 chr12 58932480 58932527 -62325003 + (TAA)n Simple_repeat Simple_repeat 3 49 0 6 1034 239 0 0 31 chr12 58933404 58933436 -62324094 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1034 187 29 0 79 chr12 58934370 58934408 -62323122 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1034 792 241 61 24 chr12 58935025 58935237 -62322293 - Lx7 LINE L1 -886 6810 6591 6 1034 370 200 0 62 chr12 58935279 58935375 -62322155 + Lx7 LINE L1 7212 7301 -395 6 1034 230 225 105 32 chr12 58935418 58935542 -62321988 + Lx7 LINE L1 7563 7695 -1 6 1034 468 59 0 0 chr12 58936310 58936378 -62321152 - L1_Mus2 LINE L1 -1 6565 6498 6 1034 210 37 0 0 chr12 58936559 58936586 -62320944 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 6 1034 4338 43 0 0 chr12 58936777 58937291 -62320239 + L1Md_F2 LINE L1 6055 6568 -14 6 1034 338 315 78 60 chr12 58937332 58937663 -62319867 + LTR37B LTR ERV1 123 459 -9 6 1034 23 54 0 0 chr12 58939445 58939482 -62318048 + AT_rich Low_complexity Low_complexity 1 37 0 6 1034 1214 90 62 0 chr12 58939713 58939890 -62317640 - B2_Mm2 SINE B2 -7 188 1 6 1034 4335 78 22 0 chr12 58940127 58940708 -62316822 - L1Md_F2 LINE L1 -6 6576 5983 6 1034 27 0 0 0 chr12 58940726 58940753 -62316777 + AT_rich Low_complexity Low_complexity 1 27 0 6 1034 703 251 150 6 chr12 58940835 58941015 -62316515 + B4A SINE B4 7 212 -80 6 1034 2200 176 56 8 chr12 58941171 58941565 -62315965 - MTC LTR MaLR -8 413 1 6 1034 967 216 213 12 chr12 58942497 58942816 -62314714 - Lx9 LINE L1 -1103 6541 6159 6 1034 570 186 0 0 chr12 58942854 58942978 -62314552 + Lx9 LINE L1 7513 7636 -8 6 1034 454 290 170 8 chr12 58943206 58943453 -62314077 + Lx8 LINE L1 7048 7334 -139 6 1034 298 160 13 39 chr12 58943592 58943670 -62313860 + Lx8 LINE L1 7396 7471 -2 6 1034 225 361 62 43 chr12 58943693 58943855 -62313675 + MER110 LTR ERV1 320 484 -7 6 1034 287 208 99 49 chr12 58943994 58944075 -62313455 + MER63B DNA AcHobo 21 105 -331 6 1034 466 261 58 8 chr12 58944055 58944175 -62313355 + MER63B DNA AcHobo 311 436 0 6 1034 239 318 0 0 chr12 58944343 58944409 -62313121 + ID4_ SINE ID 5 70 -13 6 1034 477 274 0 0 chr12 58945508 58945610 -62311920 - B1_Mm SINE Alu -45 102 1 6 1034 493 291 25 68 chr12 58947532 58947694 -62309836 - RSINE1 SINE B4 0 165 11 6 1034 282 242 97 0 chr12 58947700 58947824 -62309706 - L1MA6 LINE L1 -72 6228 6093 6 1034 589 236 97 35 chr12 58947866 58948094 -62309436 - Lx8 LINE L1 -2 7471 7230 6 1034 635 257 36 54 chr12 58948612 58948834 -62308696 - MER45B DNA Tip100 -4 1036 819 6 1034 296 389 88 57 chr12 58949399 58950001 -62307529 + L3 LINE CR1 3777 4397 -92 6 1034 2296 67 0 57 chr12 58950189 58950521 -62307009 - ORR1A2 LTR MaLR -14 313 1 6 1034 1177 216 78 6 chr12 58950528 58950859 -62306671 + Lx9 LINE L1 7288 7642 -2 6 1034 216 386 43 26 chr12 58951067 58951184 -62306346 + L2b LINE L2 3256 3374 -1 6 1034 1265 38 6 0 chr12 58952572 58952731 -62304799 + (TTCTC)n Simple_repeat Simple_repeat 4 163 0 6 1034 843 264 136 36 chr12 58953069 58953481 -62304049 + MLT1C LTR MaLR 9 461 -6 6 1034 267 308 146 50 chr12 58953532 58953771 -62303759 - LTR16C LTR ERVL -18 520 259 6 1034 349 288 93 0 chr12 58954220 58954233 -62303297 - B1F SINE Alu -1 148 89 6 1034 468 268 36 80 chr12 58954233 58954272 -62303258 - ID_B1 SINE B4 -14 210 172 6 1034 653 24 12 0 chr12 58954272 58954355 -62303175 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 6 1034 349 288 93 0 chr12 58954355 58954420 -62303110 - B1F SINE Alu -61 88 21 6 1034 468 268 36 80 chr12 58954420 58954453 -62303077 - ID_B1 SINE B4 -53 171 80 6 1034 333 0 0 0 chr12 58954626 58954663 -62302867 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1034 726 221 20 40 chr12 58955894 58955999 -62301531 + B1_Mur2 SINE Alu 2 107 -42 6 1034 2132 149 50 5 chr12 58955999 58956376 -62301154 - ORR1B1 LTR MaLR 0 394 1 6 1034 726 221 20 40 chr12 58956376 58956421 -62301109 + B1_Mur2 SINE Alu 108 149 0 6 1034 24 0 0 0 chr12 58956553 58956577 -62300953 + AT_rich Low_complexity Low_complexity 1 24 0 6 1034 1290 170 4 9 chr12 58956721 58956947 -62300583 - URR1B DNA MER1_type 0 225 1 6 1034 654 224 81 60 chr12 58957537 58957681 -62299849 - B3 SINE B2 0 216 68 6 1034 1919 173 40 3 chr12 58957681 58958035 -62299495 + ORR1B2 LTR MaLR 1 367 0 6 1034 654 224 81 60 chr12 58958035 58958075 -62299455 - B3 SINE B2 -149 67 28 6 1034 612 287 16 0 chr12 58959597 58959726 -62297804 + B3 SINE B2 2 132 -84 6 1034 341 194 0 56 chr12 58959854 58959925 -62297605 + B3 SINE B2 134 200 -16 6 1034 443 305 0 0 chr12 58960667 58960762 -62296768 + B3 SINE B2 10 104 -112 6 1034 258 319 14 0 chr12 58960768 58960837 -62296693 - B3 SINE B2 -74 142 73 6 1034 393 256 0 22 chr12 58960837 58960929 -62296601 + B3 SINE B2 124 213 -3 6 1034 650 286 207 28 chr12 58961461 58961814 -62295716 - L1MC3 LINE L1 -343 7442 7027 6 1034 497 244 169 16 chr12 58961815 58962149 -62295381 - L1MCb LINE L1 -1594 4970 4570 6 1034 1024 243 47 18 chr12 58962471 58962832 -62294698 - L1MCb LINE L1 -2174 4390 4017 6 1034 365 269 154 34 chr12 58962853 58963146 -62294384 - L1MCb LINE L1 -5012 1033 706 6 1034 254 206 41 0 chr12 58963129 58963202 -62294328 - Lx6 LINE L1 -7 7453 7378 6 1034 789 192 20 56 chr12 58963202 58963400 -62294130 - L1_Mur3 LINE L1 -2240 3640 3450 6 1034 435 315 108 37 chr12 58963761 58964002 -62293528 + MLT1A0 LTR MaLR 61 318 -47 6 1034 1309 143 6 100 chr12 58964002 58964313 -62293217 - L1_Mur3 LINE L1 -2402 3478 3197 6 1034 3346 142 19 39 chr12 58964313 58964885 -62292645 - RLTR12A LTR ERVK -7 561 1 6 1034 2834 157 93 20 chr12 58964885 58965416 -62292114 - L1_Mur3 LINE L1 -2676 3204 2645 6 1034 513 0 0 0 chr12 58965416 58965473 -62292057 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1034 2834 157 93 20 chr12 58965473 58965597 -62291933 - L1_Mur3 LINE L1 -3236 2644 2502 6 1034 2438 174 119 2 chr12 58965614 58966120 -62291410 + L1_Mur3 LINE L1 4689 5253 -627 6 1034 857 309 94 34 chr12 58966140 58966468 -62291062 - ORR1E LTR MaLR -11 348 1 6 1034 821 275 71 48 chr12 58966469 58966908 -62290622 + L1MA6 LINE L1 5833 6281 -19 6 1034 21 0 0 0 chr12 58969412 58969433 -62288097 + AT_rich Low_complexity Low_complexity 1 21 0 6 1034 664 282 66 52 chr12 58970610 58970823 -62286707 - B3 SINE B2 0 216 1 6 1034 832 284 26 4 chr12 58970838 58971071 -62286459 + Lx9 LINE L1 7141 7378 -266 6 1034 931 218 70 32 chr12 58971143 58971241 -62286289 + Lx9 LINE L1 7343 7441 -203 6 1034 3056 68 13 5 chr12 58971241 58971638 -62285892 + MTB LTR MaLR 1 400 0 6 1034 931 218 70 32 chr12 58971638 58971823 -62285707 + Lx9 LINE L1 7442 7637 -7 6 1034 24 53 0 0 chr12 58971903 58971941 -62285589 + AT_rich Low_complexity Low_complexity 1 38 0 6 1034 488 208 39 19 chr12 58973159 58973262 -62284268 - LTR16B2 LTR ERVL 0 462 358 6 1034 226 375 0 54 chr12 58973334 58973427 -62284103 - LTR16B2 LTR ERVL -320 142 55 6 1034 21656 185 51 27 chr12 58973778 58975298 -62282232 - Lx5 LINE L1 -72 6978 5447 6 1034 3998 65 2 17 chr12 58975298 58975826 -62281704 - L1_Mus2 LINE L1 0 6566 6047 6 1034 21656 158 68 33 chr12 58975826 58979004 -62278526 - Lx5 LINE L1 -431 5446 2065 6 1034 1050 100 0 0 chr12 58979004 58979184 -62278346 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1034 21656 169 55 24 chr12 58979184 58980327 -62277203 - Lx5 LINE L1 -3813 2064 861 6 1034 26 50 0 0 chr12 58980549 58980589 -62276941 + AT_rich Low_complexity Low_complexity 1 40 0 6 1034 1998 144 96 80 chr12 58981072 58981400 -62276130 - BGLII_A LTR ERVK 0 445 105 7 1034 953 49 49 0 chr12 58981400 58981522 -62276008 + B1_Mus1 SINE Alu 5 132 -16 7 1034 1998 144 96 80 chr12 58981522 58981631 -62275899 - BGLII_A LTR ERVK -341 104 1 7 1034 705 163 27 13 chr12 58981637 58981786 -62275744 - MYSERV16_I-int LTR ERVK -6 2836 2686 7 129 38220 43 1 3 chr12 58981805 58987817 -62269713 - L1Md_F2 LINE L1 -6 6576 625 7 1035 4338 202 73 33 chr12 58987818 58989420 -62268110 - MYSERV16_I-int LTR ERVK -161 2165 464 7 1035 266 167 0 16 chr12 58989451 58989512 -62268018 + A-rich Low_complexity Low_complexity 1 60 0 7 1035 2789 76 28 13 chr12 58990010 58990397 -62267133 + L1Md_F2 LINE L1 6178 6570 -12 7 1035 366 23 0 0 chr12 58991070 58991113 -62266417 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1035 443 310 75 21 chr12 58993055 58993243 -62264287 + MIRb SINE MIR 40 237 -31 7 1035 309 372 57 22 chr12 58993650 58993878 -62263652 + LTR16C LTR ERVL 240 475 -14 7 1035 671 184 17 22 chr12 58994712 58994761 -62262769 + polypyrimidine Low_complexity Low_complexity 132 178 0 7 1035 1329 73 0 0 chr12 58994761 58994939 -62262591 + (TTTCC)n Simple_repeat Simple_repeat 1 178 0 7 1035 671 184 17 22 chr12 58994939 58995067 -62262463 + polypyrimidine Low_complexity Low_complexity 3 131 0 7 1035 661 70 10 10 chr12 58995080 58995181 -62262349 + (TTCC)n Simple_repeat Simple_repeat 2 102 0 7 1035 264 348 66 27 chr12 58996623 58996789 -62260741 - MIR3 SINE MIR -15 193 28 7 1035 197 108 0 26 chr12 58998531 58998569 -62258961 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 7 1035 276 278 141 20 chr12 58999307 58999406 -62258124 + B1F SINE Alu 13 123 -26 7 1035 259 287 117 27 chr12 58999406 58999418 -62258112 + ID_B1 SINE B4 94 214 -10 7 1035 929 244 126 48 chr12 58999579 59000000 -62257530 - L1MB2 LINE L1 -22 6149 5696 7 1035 1655 174 60 81 chr12 59000053 59000423 -62257107 + ORR1B1 LTR MaLR 3 364 -30 1 1035 5806 80 25 2 chr12 59000423 59001919 -62255611 + L1VL2 LINE L1 295 1826 -1789 2 1035 316 236 21 43 chr12 59002056 59002149 -62255381 - PB1D10 SINE Alu 0 117 27 3 1035 22 35 0 0 chr12 59002295 59002324 -62255206 + AT_rich Low_complexity Low_complexity 1 29 0 4 1035 21 57 0 0 chr12 59002823 59002858 -62254672 + AT_rich Low_complexity Low_complexity 1 35 0 5 1035 21 57 0 0 chr12 59003010 59003045 -62254485 + AT_rich Low_complexity Low_complexity 1 35 0 6 1035 198 0 0 0 chr12 59003125 59003147 -62254383 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 1035 985 70 31 0 chr12 59003157 59003286 -62254244 - B1_Mm SINE Alu -10 137 5 8 1035 255 149 90 0 chr12 59003306 59003373 -62254157 + L1M2 LINE L1 2750 2822 -3321 9 1035 52 41 0 0 chr12 59003397 59003470 -62254060 + AT_rich Low_complexity Low_complexity 1 73 0 1 1035 271 170 0 0 chr12 59003470 59003517 -62254013 + ORR1B1 LTR MaLR 340 386 -8 1 1035 413 293 112 34 chr12 59003887 59004120 -62253410 + Lx8 LINE L1 7216 7466 -7 1 1035 770 156 82 0 chr12 59004543 59004678 -62252852 + B1_Mur4 SINE Alu 5 150 0 1 1035 434 319 58 16 chr12 59004711 59004899 -62252631 + MLT1D LTR MaLR 303 498 -7 1 1035 35 24 0 0 chr12 59005337 59005379 -62252151 + AT_rich Low_complexity Low_complexity 1 42 0 1 1035 241 258 31 46 chr12 59007480 59007545 -62249985 + B1F SINE Alu 74 137 -12 1 1035 260 27 27 0 chr12 59007710 59007747 -62249783 + (CTAAA)n Simple_repeat Simple_repeat 3 40 0 1 1035 285 170 22 11 chr12 59008479 59008568 -62248962 - Lx9 LINE L1 -39 7605 7516 1 1035 957 240 97 0 chr12 59008568 59008889 -62248641 + Lx9 LINE L1 7283 7634 -10 1 1035 2062 282 34 45 chr12 59008962 59010026 -62247504 - L1MC1 LINE L1 -85 6248 5193 1 1035 768 300 72 48 chr12 59010102 59010393 -62247137 - MLT1A0 LTR MaLR 0 365 68 2 1035 2253 169 81 7 chr12 59010659 59011093 -62246437 - RMER4A LTR ERVK 0 466 1 2 1035 38551 4 11 0 chr12 59011732 59017981 -62239549 - L1Md_A LINE L1 0 6582 259 2 1035 270 0 0 0 chr12 59018177 59018207 -62239323 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1035 1428 242 75 17 chr12 59018217 59018562 -62238968 - RMER15 LTR ERVL -16 559 195 2 1035 1538 6 6 0 chr12 59018564 59018743 -62238787 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 2 1035 714 105 0 0 chr12 59018743 59018848 -62238682 + (TTCCC)n Simple_repeat Simple_repeat 1 105 0 2 1035 1103 112 19 0 chr12 59018865 59019025 -62238505 - RMER15 LTR ERVL -405 170 8 2 1035 1738 221 34 82 chr12 59019069 59019567 -62237963 - RMER19C LTR ERVK 0 611 138 2 1035 185 250 0 0 chr12 59020945 59020985 -62236545 - MIR SINE MIR -5 257 218 2 1035 2428 169 109 8 chr12 59021292 59021768 -62235762 + RLTR28 LTR ERVL 1 524 0 2 1035 246 263 149 25 chr12 59023504 59023625 -62233905 - MTB LTR MaLR -80 320 185 3 1035 789 179 14 14 chr12 59024534 59024676 -62232854 - B1_Mur1 SINE Alu -6 143 2 3 1035 714 44 0 0 chr12 59024712 59024802 -62232728 + (TG)n Simple_repeat Simple_repeat 2 91 0 3 1035 273 361 9 9 chr12 59025343 59025452 -62232078 + CT-rich Low_complexity Low_complexity 6 114 0 3 1035 310 292 132 0 chr12 59025925 59026062 -62231468 - MER5A1 DNA MER1_type -3 163 9 3 1035 489 84 0 0 chr12 59026926 59026997 -62230533 + (TAAA)n Simple_repeat Simple_repeat 3 73 0 3 1035 353 357 65 7 chr12 59027016 59027171 -62230359 + MER102b DNA MER1_type 178 341 0 3 1035 24 85 0 0 chr12 59027561 59027620 -62229910 + AT_rich Low_complexity Low_complexity 1 59 0 3 1035 528 16 0 0 chr12 59027767 59027828 -62229702 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1035 200 269 19 0 chr12 59028502 59028554 -62228976 - MIRc SINE MIR -110 158 106 3 1035 604 48 48 9 chr12 59029652 59029757 -62227773 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 4 1035 3445 216 86 15 chr12 59029772 59030644 -62226886 - Lx6 LINE L1 -35 7425 6274 4 1035 412 147 81 65 chr12 59031383 59031507 -62226023 + Lx2A1 LINE L1 6878 7003 -5 4 1035 293 220 0 17 chr12 59032260 59032320 -62225210 - Lx7 LINE L1 -553 7143 7085 4 1035 253 276 20 28 chr12 59032309 59032429 -62225101 - L1M5 LINE L1 -509 5670 5551 4 1035 270 388 0 0 chr12 59032455 59032553 -62224977 - PB1D10 SINE Alu -17 100 3 4 1035 1210 261 70 38 chr12 59032912 59033282 -62224248 + MTD LTR MaLR 18 399 -20 4 1035 239 247 34 0 chr12 59033312 59033401 -62224129 - L1MD LINE L1 -1091 5055 4964 4 1035 228 324 40 12 chr12 59034115 59034220 -62223310 + B2_Mm2 SINE B2 13 120 -96 4 1035 6050 115 50 15 chr12 59034985 59036668 -62220862 + L1VL1 LINE L1 226 1977 -1721 4 1035 34793 42 19 4 chr12 59036668 59042918 -62214612 - L1Md_T LINE L1 0 6585 188 5 1035 14366 123 14 91 chr12 59042918 59043421 -62214109 + L1_Mm LINE L1 2180 2469 -3414 5 1035 329 20 0 39 chr12 59043421 59043472 -62214058 + L1Md_F2 LINE L1 6522 6570 -12 5 1035 14366 123 14 91 chr12 59043472 59045882 -62211648 + L1_Mm LINE L1 2470 4870 -1013 5 1035 1603 78 0 0 chr12 59045879 59046096 -62211434 - L1Md_F2 LINE L1 -386 6196 5980 5 1035 912 43 0 0 chr12 59046861 59046978 -62210552 + (TTC)n Simple_repeat Simple_repeat 1 117 0 5 1035 398 181 78 50 chr12 59047879 59047982 -62209548 + PB1D10 SINE Alu 16 149 0 5 1035 271 115 0 47 chr12 59047990 59048054 -62209476 + A-rich Low_complexity Low_complexity 5 65 0 5 1035 22 35 0 0 chr12 59049181 59049210 -62208320 + AT_rich Low_complexity Low_complexity 1 29 0 5 1035 651 281 111 30 chr12 59049321 59049618 -62207912 + Lx8 LINE L1 6972 7292 -181 5 1035 336 45 0 0 chr12 59049656 59049692 -62207838 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1035 420 20 0 0 chr12 59049692 59049741 -62207789 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1035 336 45 0 0 chr12 59049741 59049748 -62207782 + (TA)n Simple_repeat Simple_repeat 1 7 0 6 1035 26 0 0 0 chr12 59049838 59049864 -62207666 + AT_rich Low_complexity Low_complexity 1 26 0 6 1035 23 0 0 0 chr12 59049884 59049907 -62207623 + AT_rich Low_complexity Low_complexity 1 23 0 6 1035 235 336 74 54 chr12 59050185 59050333 -62207197 - Lx8 LINE L1 -87 7386 7236 6 1035 451 268 96 68 chr12 59051268 59051488 -62206042 - MER2 DNA MER2_type -27 318 93 6 1035 812 260 133 4 chr12 59051518 59051773 -62205757 + B4A SINE B4 5 292 0 6 1035 387 127 0 0 chr12 59051773 59051836 -62205694 + (CACG)n Simple_repeat Simple_repeat 1 63 0 6 1035 1177 208 14 27 chr12 59054257 59054554 -62202976 - RLTR42-int LTR ERVK -569 4953 4661 6 1035 1324 195 104 84 chr12 59054558 59054608 -62202922 - RLTR42-int LTR ERVK -820 4702 4663 6 1035 2672 105 62 2 chr12 59054608 59055027 -62202503 + BGLII_A LTR ERVK 2 445 0 6 1035 1324 195 104 84 chr12 59055027 59055464 -62202066 - RLTR42-int LTR ERVK -860 4662 4205 6 1035 877 128 20 0 chr12 59055476 59055624 -62201906 - RLTR42-int LTR ERVK -1364 4158 4008 6 1035 291 284 0 19 chr12 59055696 59055800 -62201730 - RLTR42-int LTR ERVK -2548 2974 2873 6 1035 1548 227 50 34 chr12 59056881 59057319 -62200211 - RLTR42-int LTR ERVK -4122 1400 956 6 1035 778 284 64 93 chr12 59057409 59057891 -62199639 - RLTR11A2 LTR ERVK -50 477 10 7 1035 203 245 0 20 chr12 59062110 59062160 -62195370 + C-rich Low_complexity Low_complexity 3 51 0 7 1035 400 195 35 0 chr12 59062252 59062339 -62195191 - RLTR42-int LTR ERVK -2566 2956 2867 7 1035 657 106 0 0 chr12 59062521 59062625 -62194905 + (CA)n Simple_repeat Simple_repeat 1 104 0 7 1035 225 0 0 0 chr12 59062627 59062652 -62194878 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1035 241 164 0 47 chr12 59063135 59063199 -62194331 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 7 1035 25 31 0 0 chr12 59063419 59063451 -62194079 + AT_rich Low_complexity Low_complexity 1 32 0 7 1035 474 18 0 0 chr12 59063527 59063582 -62193948 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1035 579 130 0 0 chr12 59063584 59063684 -62193846 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 1035 24 0 0 0 chr12 59064046 59064070 -62193460 + AT_rich Low_complexity Low_complexity 1 24 0 7 1035 595 116 259 0 chr12 59064140 59064252 -62193278 - MTC LTR MaLR -280 141 1 8 1035 388 264 44 35 chr12 59064568 59064682 -62192848 - RLTR42-int LTR ERVK -4134 1388 1274 7 1035 207 167 0 0 chr12 59066498 59066540 -62190990 + CT-rich Low_complexity Low_complexity 1 42 0 8 1035 234 259 138 0 chr12 59066577 59066635 -62190895 - PB1 SINE Alu -49 78 13 8 1035 1263 77 0 0 chr12 59066794 59066950 -62190580 - L1_Mus2 LINE L1 -246 5637 5482 8 1035 7177 64 8 3 chr12 59066950 59067873 -62189657 + L1_Mus2 LINE L1 5640 6566 0 8 1035 1639 290 79 16 chr12 59067972 59068516 -62189014 + Lx8 LINE L1 6225 6802 -671 8 1035 1059 276 86 6 chr12 59068555 59068879 -62188651 + Lx8 LINE L1 7122 7471 -2 8 1035 556 305 13 39 chr12 59069018 59069247 -62188283 - L1_Rod LINE L1 0 5847 5625 8 1035 189 388 16 85 chr12 59069619 59069867 -62187663 + L2c LINE L2 3083 3313 -74 8 1035 258 32 0 0 chr12 59071466 59071497 -62186033 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1035 500 221 49 14 chr12 59071827 59071969 -62185561 - L1MA9 LINE L1 -14 6298 6152 8 1035 3546 195 105 88 chr12 59071967 59072880 -62184650 + RMER1A Other Other 17 872 -158 8 1035 504 0 0 0 chr12 59072880 59072936 -62184594 + (TC)n Simple_repeat Simple_repeat 2 57 0 9 1035 387 0 0 0 chr12 59072936 59072978 -62184552 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1035 3546 193 106 90 chr12 59072978 59073079 -62184451 + RMER1A Other Other 873 1016 -14 8 1035 734 269 128 58 chr12 59073145 59073248 -62184282 - L1MA9 LINE L1 -26 6286 6153 9 1035 381 22 0 0 chr12 59073248 59073294 -62184236 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1035 734 269 128 58 chr12 59073294 59073407 -62184123 - L1MA9 LINE L1 -160 6152 6033 9 1035 705 221 131 5 chr12 59073407 59073443 -62184087 - B3 SINE B2 0 216 180 9 1035 249 33 0 0 chr12 59073443 59073473 -62184057 + (TATG)n Simple_repeat Simple_repeat 2 31 0 9 1035 705 221 131 5 chr12 59073473 59073627 -62183903 - B3 SINE B2 -37 179 2 9 1035 734 269 128 58 chr12 59073627 59073839 -62183691 - L1MA9 LINE L1 -280 6032 5828 9 1035 844 278 127 33 chr12 59073959 59074586 -62182944 - L1MA9 LINE L1 -676 5621 4985 9 1035 330 115 0 0 chr12 59074586 59074638 -62182892 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1035 654 309 167 52 chr12 59074638 59074849 -62182681 - L1MA9 LINE L1 -1159 4984 4730 9 1035 2175 59 17 17 chr12 59074849 59075143 -62182387 - L1Md_F2 LINE L1 -3 6579 6286 9 1035 654 309 167 52 chr12 59075143 59075290 -62182240 - L1MA9 LINE L1 -1414 4729 4555 9 1035 1582 166 27 115 chr12 59075290 59075698 -62181832 + ORR1D1 LTR MaLR 3 374 0 9 1035 654 309 167 52 chr12 59075698 59076523 -62181007 - L1MA9 LINE L1 -1589 4554 3607 9 1035 366 42 0 0 chr12 59076592 59076640 -62180890 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 9 1035 612 220 17 6 chr12 59076642 59076816 -62180714 + CT-rich Low_complexity Low_complexity 5 180 0 1 1035 6128 209 42 27 chr12 59076835 59078411 -62179119 - L1_Mur3 LINE L1 -2923 2957 1359 1 1035 626 316 47 9 chr12 59078534 59078745 -62178785 + Lx8 LINE L1 6385 6603 -870 1 1035 537 16 0 0 chr12 59078792 59078854 -62178676 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1 1035 610 348 71 1 chr12 59078855 59079053 -62178477 - B3A SINE B2 -5 211 1 1 1035 27 29 0 0 chr12 59079810 59079844 -62177686 + AT_rich Low_complexity Low_complexity 1 34 0 1 1035 495 33 0 0 chr12 59079844 59079905 -62177625 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1035 399 83 0 0 chr12 59079925 59079985 -62177545 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1035 21 36 0 0 chr12 59080465 59080493 -62177037 + AT_rich Low_complexity Low_complexity 1 28 0 1 1035 354 65 16 0 chr12 59080615 59080677 -62176853 + Lx LINE L1 6585 6647 -7 1 1035 423 312 80 0 chr12 59080972 59081084 -62176446 - RSINE1 SINE B4 -32 133 13 1 1035 216 0 0 0 chr12 59081099 59081123 -62176407 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1035 1104 14 21 0 chr12 59081123 59081264 -62176266 + (TAGA)n Simple_repeat Simple_repeat 1 145 0 1 1035 306 0 0 0 chr12 59081392 59081426 -62176104 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1035 22 0 0 0 chr12 59081630 59081652 -62175878 + AT_rich Low_complexity Low_complexity 1 22 0 1 1035 252 257 0 0 chr12 59082028 59082098 -62175432 + CT-rich Low_complexity Low_complexity 1 70 0 1 1035 1160 111 0 6 chr12 59082101 59082255 -62175275 + (TTC)n Simple_repeat Simple_repeat 3 156 0 1 1035 1254 90 0 0 chr12 59082255 59082433 -62175097 + (TCC)n Simple_repeat Simple_repeat 3 180 0 1 1035 1160 111 0 6 chr12 59082433 59082459 -62175071 + (TTC)n Simple_repeat Simple_repeat 1 26 0 1 1035 1125 62 0 14 chr12 59082468 59082616 -62174914 - B1_Mm SINE Alu -1 146 1 1 1035 8448 30 0 3 chr12 59082905 59084026 -62173504 - L1Md_T LINE L1 -11 6571 5454 1 1035 189 368 70 32 chr12 59084241 59084398 -62173132 - MIR3 SINE MIR -16 192 30 1 1035 808 293 102 18 chr12 59084549 59084991 -62172539 - L1MA6 LINE L1 0 6300 5822 1 1035 5622 117 17 8 chr12 59085199 59086061 -62171469 - Lx2 LINE L1 0 6997 6128 1 1035 885 275 113 10 chr12 59086207 59086703 -62170827 - L1MA6 LINE L1 -1582 4561 4015 1 1035 459 0 0 0 chr12 59086711 59086762 -62170768 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1035 716 317 28 24 chr12 59086783 59087035 -62170495 - B4A SINE B4 -39 253 1 1 1035 1468 258 57 18 chr12 59087037 59087649 -62169881 - L1MA6 LINE L1 -2185 3958 3323 1 1035 22 0 0 0 chr12 59087649 59087671 -62169859 + AT_rich Low_complexity Low_complexity 1 22 0 1 1035 321 89 0 0 chr12 59087671 59087716 -62169814 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1035 329 93 0 18 chr12 59088121 59088176 -62169354 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 1 1035 378 327 31 0 chr12 59088340 59088502 -62169028 - MER2 DNA MER2_type -61 284 118 1 1035 260 182 0 0 chr12 59088901 59088945 -62168585 + MT2A LTR ERVL 488 531 -2 1 1035 2165 267 27 22 chr12 59088947 59089502 -62168028 + Lx7 LINE L1 6388 6945 -751 1 1035 21 71 0 0 chr12 59089600 59089642 -62167888 + AT_rich Low_complexity Low_complexity 1 42 0 1 1035 436 360 20 13 chr12 59089754 59089906 -62167624 - RSINE1 SINE B4 -3 162 10 1 1035 27 29 0 0 chr12 59091145 59091179 -62166351 + AT_rich Low_complexity Low_complexity 1 34 0 1 1035 317 252 83 18 chr12 59091360 59091469 -62166061 + L1MEg LINE L1 93 208 -6192 1 1035 408 343 79 55 chr12 59091610 59091969 -62165561 + L1MEg LINE L1 1336 1789 -4626 1 1035 352 310 105 29 chr12 59093616 59093825 -62163705 - L2c LINE L2 -67 3320 3096 1 1035 1660 83 0 0 chr12 59094144 59094373 -62163157 - RMER6C LTR ERVK 0 690 462 1 1035 400 283 20 92 chr12 59094471 59094623 -62162907 - B1F SINE Alu 0 149 9 1 1035 1131 270 66 71 chr12 59095012 59095391 -62162139 - MTEa LTR MaLR -2 377 1 1 1035 516 88 0 66 chr12 59096459 59096580 -62160950 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 1 1035 1503 148 98 72 chr12 59097011 59097411 -62160119 - RMER17C LTR ERVK 0 410 1 1 1035 230 259 17 0 chr12 59097549 59097607 -62159923 - MIRc SINE MIR -109 159 101 1 1035 284 325 0 0 chr12 59097920 59098000 -62159530 + (CGTG)n Simple_repeat Simple_repeat 4 83 0 1 1035 435 294 81 67 chr12 59098004 59098288 -62159242 - B4 SINE B4 -2 290 3 1 1035 294 73 0 0 chr12 59098811 59098852 -62158678 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1035 1303 274 74 38 chr12 59098901 59099490 -62158040 + Lx9 LINE L1 6784 7431 -213 1 1035 3337 35 2 0 chr12 59100364 59100759 -62156771 - MTA_Mm LTR MaLR 0 396 1 1 1035 246 185 111 0 chr12 59100759 59100840 -62156690 + RCHARR1 DNA MER1_type 775 864 -110 1 1035 24 77 0 0 chr12 59100867 59100919 -62156611 + AT_rich Low_complexity Low_complexity 1 52 0 1 1035 5034 39 3 2 chr12 59101218 59101830 -62155700 - L1Md_F2 LINE L1 -16 6566 5954 1 1035 520 256 115 35 chr12 59102680 59102967 -62154563 - RLTR15 LTR ERVK -5 354 45 1 1035 315 104 0 0 chr12 59103354 59103402 -62154128 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1035 1329 164 0 13 chr12 59104435 59104664 -62152866 + URR1A DNA MER1_type 1 226 0 1 1035 219 36 0 0 chr12 59104733 59104761 -62152769 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1035 243 0 0 0 chr12 59105164 59105191 -62152339 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1 1035 1128 241 43 20 chr12 59105287 59105639 -62151891 - L1_Rod LINE L1 -1843 4004 3645 1 1035 2864 258 95 61 chr12 59105642 59106378 -62151152 - L1_Mur3 LINE L1 -2930 2950 2223 1 1035 1202 48 0 0 chr12 59106378 59106523 -62151007 - B1_Mus1 SINE Alu -1 147 3 1 1035 2864 258 95 61 chr12 59106523 59107374 -62150156 - L1_Mur3 LINE L1 -3658 2222 1308 1 1035 1623 188 38 64 chr12 59107374 59107766 -62149764 - ORR1C2 LTR MaLR -2 382 1 1 1035 2864 301 32 85 chr12 59107766 59108201 -62149329 - L1_Mur3 LINE L1 -4573 1307 900 1 1035 337 169 134 61 chr12 59109039 59109121 -62148409 - Lx8 LINE L1 -147 7326 7239 1 1035 23 0 0 0 chr12 59109142 59109165 -62148365 + AT_rich Low_complexity Low_complexity 1 23 0 1 1035 491 126 11 0 chr12 59109408 59109503 -62148027 + (TATG)n Simple_repeat Simple_repeat 1 96 0 1 1035 685 293 52 28 chr12 59109503 59109829 -62147701 - Lx9 LINE L1 -132 7512 7179 1 1035 829 319 130 6 chr12 59109959 59110297 -62147233 - MER68 LTR ERVL -155 408 29 1 1035 1399 32 10 26 chr12 59111062 59111255 -62146275 + L1Md_F3 LINE L1 6393 6582 -2 1 1035 705 182 71 11 chr12 59111359 59111542 -62145988 - Lx9 LINE L1 -29 7615 7422 1 1035 365 129 65 0 chr12 59111539 59111601 -62145929 + Lx9 LINE L1 7338 7403 -241 1 1035 686 109 9 0 chr12 59112194 59112304 -62145226 + (TCTA)n Simple_repeat Simple_repeat 1 111 0 1 1035 1005 128 0 0 chr12 59112351 59112531 -62144999 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1035 399 293 90 12 chr12 59112887 59113053 -62144477 - MIRb SINE MIR -18 250 72 1 1036 334 319 56 12 chr12 59114674 59114836 -62142694 - MLT1B LTR MaLR 0 390 222 1 1036 423 0 0 0 chr12 59114854 59114901 -62142629 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1036 289 306 40 10 chr12 59115130 59115229 -62142301 - MLT1B LTR MaLR -245 129 28 1 1036 283 315 87 22 chr12 59115450 59115635 -62141895 + B3A SINE B2 1 197 -1 1 1036 2347 209 84 9 chr12 59116034 59116603 -62140927 + Lx9 LINE L1 6884 7495 -149 1 1036 201 162 0 0 chr12 59116678 59116715 -62140815 + A-rich Low_complexity Low_complexity 6 42 0 1 1036 920 287 111 46 chr12 59116717 59117024 -62140506 - ORR1E LTR MaLR -28 331 5 1 1036 380 337 65 16 chr12 59117073 59117257 -62140273 - HAL1 LINE L1 -336 2171 1979 1 1036 234 0 0 0 chr12 59117457 59117483 -62140047 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1036 450 0 0 0 chr12 59117483 59117532 -62139998 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1036 357 24 0 0 chr12 59118235 59118277 -62139253 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1036 914 153 0 17 chr12 59118288 59118461 -62139069 + (TA)n Simple_repeat Simple_repeat 2 171 0 1 1036 331 241 182 18 chr12 59118999 59119164 -62138366 + L1MC4a LINE L1 7075 7266 -616 1 1036 2737 83 15 15 chr12 59119323 59119716 -62137814 - L1Md_F2 LINE L1 -12 6570 6178 1 1036 5802 37 6 1 chr12 59121581 59122281 -62135249 - L1Md_F3 LINE L1 -17 6567 5865 1 1036 12199 39 1 31 chr12 59122281 59123834 -62133696 + L1Md_F3 LINE L1 4359 5864 -19 1 1036 198 143 0 0 chr12 59124216 59124251 -62133279 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 1 1036 519 302 31 16 chr12 59124694 59124886 -62132644 + L5 LINE RTE 220 414 -1851 1 1036 318 342 112 48 chr12 59125838 59126151 -62131379 + MLT1G LTR MaLR 44 376 -215 1 1036 184 316 35 81 chr12 59126481 59126567 -62130963 - L2 LINE L2 -706 2713 2632 1 1036 255 167 0 0 chr12 59127695 59127761 -62129769 + A-rich Low_complexity Low_complexity 3 68 0 1 1036 364 209 113 0 chr12 59127842 59127957 -62129573 + L1M3 LINE L1 2971 3098 -3042 1 1036 1965 259 40 88 chr12 59127957 59128698 -62128832 + Lx7 LINE L1 6833 7538 -158 1 1036 1003 239 10 101 chr12 59128703 59128991 -62128539 + RLTR18B LTR ERVK 102 363 -149 1 1036 407 261 0 17 chr12 59129005 59129122 -62128408 + Lx7 LINE L1 7578 7692 -4 1 1036 8332 109 4 12 chr12 59129127 59130404 -62127126 - L1_Mm LINE L1 -1293 4590 3325 1 1036 387 280 56 0 chr12 59130434 59130559 -62126971 + L1M3 LINE L1 3365 3496 -2647 1 1036 475 348 100 4 chr12 59130603 59130883 -62126647 - MLT1A0 LTR MaLR -55 310 4 1 1036 1222 303 70 36 chr12 59130911 59131685 -62125845 + L1M3 LINE L1 3522 4321 -1819 1 1036 199 235 0 161 chr12 59131785 59131866 -62125664 + L2b LINE L2 3297 3378 -9 1 1036 264 329 47 88 chr12 59132602 59132772 -62124758 - MER90a LTR ERV1 -5 570 408 1 1036 564 348 55 45 chr12 59132871 59133023 -62124507 - MER90a LTR ERV1 -313 301 139 1 1036 1806 203 2 79 chr12 59133023 59133430 -62124100 + ORR1C1 LTR MaLR 1 376 -2 1 1036 564 348 55 45 chr12 59133430 59133464 -62124066 - MER90a LTR ERV1 -476 138 107 1 1036 6826 61 0 5 chr12 59133464 59134326 -62123204 + L1Md_F2 LINE L1 5713 6570 -12 1 1036 564 348 55 45 chr12 59134326 59134430 -62123100 - MER90a LTR ERV1 -508 106 7 1 1036 29 0 0 0 chr12 59135090 59135119 -62122411 + AT_rich Low_complexity Low_complexity 1 29 0 1 1036 243 0 0 0 chr12 59135386 59135413 -62122117 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1036 603 67 0 0 chr12 59135413 59135501 -62122029 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1036 450 367 142 29 chr12 59135504 59135849 -62121681 - MLT2C2 LTR ERVL -75 389 6 2 1036 1981 114 3 10 chr12 59136365 59136667 -62120863 - Lx LINE L1 -7 6647 6348 2 1036 5224 86 42 7 chr12 59136675 59137456 -62120074 + Lx LINE L1 5534 6342 -312 2 1036 21 36 0 0 chr12 59138570 59138598 -62118932 + AT_rich Low_complexity Low_complexity 1 28 0 2 1036 878 340 92 21 chr12 59138621 59139090 -62118440 - RMER5 LTR ERV1 0 534 33 2 1036 2008 192 128 14 chr12 59140822 59141250 -62116280 + Lx6 LINE L1 6423 6899 -561 2 1036 642 211 116 131 chr12 59141316 59141534 -62115996 - RMER12 LTR ERVK -106 1216 1020 2 1036 1124 35 0 7 chr12 59141534 59141676 -62115854 + (GGAAA)n Simple_repeat Simple_repeat 2 142 0 2 1036 642 201 147 84 chr12 59141676 59141769 -62115761 - RMER12 LTR ERVK -303 1019 954 2 1036 1597 242 53 99 chr12 59141746 59142608 -62114922 - RMER12 LTR ERVK -1053 795 1 2 1036 1024 226 9 9 chr12 59142608 59142818 -62114712 + Lx6 LINE L1 6894 7103 -357 2 1036 797 326 45 39 chr12 59142955 59143312 -62114218 + ORR1D2 LTR MaLR 12 370 0 2 1036 405 276 38 68 chr12 59143414 59143635 -62113895 + L1MA4 LINE L1 5790 6003 -153 2 1036 612 284 0 22 chr12 59145316 59145453 -62112077 - RSINE1 SINE B4 -28 137 4 2 1036 376 267 233 53 chr12 59145743 59145949 -62111581 - HAL1-3A_ME LINE L1 -641 2217 1975 2 1036 379 148 39 56 chr12 59145961 59146140 -62111390 + (TATG)n Simple_repeat Simple_repeat 1 176 0 2 1036 219 173 44 35 chr12 59146165 59146279 -62111251 + (TG)n Simple_repeat Simple_repeat 2 116 0 2 1036 463 294 102 35 chr12 59149305 59149531 -62107999 - RMER5 LTR ERV1 -145 389 149 2 1036 23 0 0 0 chr12 59149815 59149838 -62107692 + AT_rich Low_complexity Low_complexity 1 23 0 2 1036 802 128 15 29 chr12 59149847 59149984 -62107546 - RLTR15 LTR ERVK 0 359 225 2 1036 6619 107 27 9 chr12 59149988 59150985 -62106545 - L1_Mus4 LINE L1 0 6636 5622 2 1036 1051 209 27 0 chr12 59150985 59151210 -62106320 - RLTR15 LTR ERVK -128 231 1 2 1036 252 0 0 0 chr12 59151877 59151905 -62105625 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1036 22 35 0 0 chr12 59152436 59152465 -62105065 + AT_rich Low_complexity Low_complexity 1 29 0 2 1036 232 254 149 0 chr12 59153028 59153162 -62104368 + L1M4 LINE L1 5011 5164 -982 2 1036 7532 158 8 3 chr12 59153227 59154531 -62102999 - L1_Mm LINE L1 -735 5148 3838 2 1036 31 0 0 0 chr12 59154543 59154574 -62102956 + AT_rich Low_complexity Low_complexity 1 31 0 2 1036 2848 61 11 3 chr12 59154579 59154957 -62102573 - L1_Mus1 LINE L1 -2 6565 6185 2 1036 7476 97 0 24 chr12 59154957 59155541 -62101989 + L1_Mm LINE L1 4643 5204 -679 2 1036 3360 73 22 0 chr12 59155541 59155995 -62101535 - L1_Mus1 LINE L1 0 6567 6104 2 1036 7476 97 0 24 chr12 59155995 59156496 -62101034 + L1_Mm LINE L1 5205 5702 -181 2 1036 343 127 0 0 chr12 59156492 59156547 -62100983 - L1_Mur2 LINE L1 -2034 3843 3789 2 1036 394 336 88 59 chr12 59156603 59157081 -62100449 + L1MB3 LINE L1 5350 5841 -342 2 1036 340 256 42 60 chr12 59157168 59157334 -62100196 + L1MB3 LINE L1 6008 6170 -13 2 1036 192 152 0 0 chr12 59157432 59157465 -62100065 + CT-rich Low_complexity Low_complexity 2 34 0 2 1036 24 32 0 0 chr12 59158299 59158330 -62099200 + AT_rich Low_complexity Low_complexity 1 31 0 2 1036 397 218 8 8 chr12 59158441 59158566 -62098964 + (TG)n Simple_repeat Simple_repeat 1 125 0 2 1036 185 339 71 0 chr12 59158824 59158880 -62098650 - MER5B DNA MER1_type -30 148 89 2 1036 608 316 1 1 chr12 59159085 59159238 -62098292 + B3 SINE B2 1 158 -40 2 1036 189 107 0 0 chr12 59159238 59159266 -62098264 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1036 596 330 32 26 chr12 59159266 59159302 -62098228 + B3A SINE B2 159 191 -7 2 1036 5617 47 4 3 chr12 59159312 59160012 -62097518 - L1Md_F2 LINE L1 -2 6580 5880 2 1036 1648 212 51 0 chr12 59160801 59161136 -62096394 - ORR1C2 LTR MaLR -32 352 1 2 1036 12687 114 14 25 chr12 59161169 59162651 -62094879 + Lx4A LINE L1 3859 5304 -573 2 1036 5223 57 0 6 chr12 59162651 59163318 -62094212 + L1Md_F2 LINE L1 5908 6570 -12 2 1036 12687 129 39 10 chr12 59163318 59164981 -62092549 + Lx4A LINE L1 5305 7058 0 2 1036 21 0 0 0 chr12 59165632 59165653 -62091877 + AT_rich Low_complexity Low_complexity 1 21 0 2 1036 899 242 61 0 chr12 59165916 59166114 -62091416 + B3 SINE B2 1 210 -6 2 1036 369 186 8 31 chr12 59166237 59166365 -62091165 - Lx9 LINE L1 0 7644 7520 2 1036 266 328 129 0 chr12 59166687 59166803 -62090727 + L2a LINE L2 3296 3426 0 2 1036 234 0 0 0 chr12 59167204 59167230 -62090300 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 1036 1092 259 152 16 chr12 59167723 59168045 -62089485 - MTD LTR MaLR -53 366 1 2 1036 25 0 0 0 chr12 59168218 59168243 -62089287 + AT_rich Low_complexity Low_complexity 1 25 0 2 1036 240 317 116 84 chr12 59169091 59169246 -62088284 + LTR16B2 LTR ERVL 301 460 -2 2 1036 206 333 48 68 chr12 59169255 59169358 -62088172 + MIRc SINE MIR 129 232 -36 2 1036 1040 279 37 0 chr12 59171468 59171823 -62085707 - L1_Mur3 LINE L1 -840 5040 4673 2 1036 1079 159 119 0 chr12 59171843 59172044 -62085486 + URR1A DNA MER1_type 1 225 -1 2 1036 276 310 68 30 chr12 59172150 59172283 -62085247 + L1MA9 LINE L1 4080 4217 -1926 2 1036 218 266 39 15 chr12 59172286 59172305 -62085225 + (TCTA)n Simple_repeat Simple_repeat 3 21 0 2 1036 183 129 0 0 chr12 59172305 59172336 -62085194 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 1036 327 253 11 0 chr12 59172336 59172461 -62085069 + (TATATG)n Simple_repeat Simple_repeat 1 126 0 2 1036 323 232 138 31 chr12 59172478 59172674 -62084856 + L1M4 LINE L1 4277 4493 -1653 2 1036 578 209 126 13 chr12 59172727 59172965 -62084565 + L1M2 LINE L1 5271 5535 -777 2 1036 881 309 40 54 chr12 59172970 59173381 -62084149 + L1MA9 LINE L1 4628 5031 -1112 2 1036 1006 168 157 0 chr12 59173381 59173572 -62083958 + URR1A DNA MER1_type 5 225 -1 2 1036 881 309 40 54 chr12 59173572 59173814 -62083716 + L1MA9 LINE L1 5032 5275 -868 2 1036 210 37 0 0 chr12 59173814 59173841 -62083689 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1036 881 309 40 54 chr12 59173841 59173941 -62083589 + L1MA9 LINE L1 5276 5371 -772 2 1036 3106 101 39 40 chr12 59173944 59174438 -62083092 + L1_Mus3 LINE L1 6141 6633 -5 2 1036 3326 283 85 11 chr12 59174448 59175605 -62081925 + Lx8 LINE L1 6194 7435 -38 2 1036 274 45 45 0 chr12 59175607 59175651 -62081879 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1036 366 325 36 94 chr12 59175674 59176003 -62081527 + L1MA9 LINE L1 5813 6122 -190 2 1036 765 339 60 18 chr12 59176092 59176146 -62081384 + Lx8 LINE L1 6430 6480 -993 2 1036 1265 247 44 41 chr12 59176146 59176513 -62081017 + ORR1D2 LTR MaLR 3 370 0 2 1036 765 331 104 17 chr12 59176513 59177099 -62080431 + Lx8 LINE L1 6481 7124 -349 2 1036 1417 212 139 16 chr12 59177496 59177869 -62079661 + MTD LTR MaLR 1 419 0 2 1036 280 238 133 71 chr12 59178265 59178378 -62079152 - MIR3 SINE MIR -18 190 71 2 1036 279 54 0 0 chr12 59178468 59178505 -62079025 + (TAA)n Simple_repeat Simple_repeat 3 39 0 2 1036 273 358 45 18 chr12 59180371 59180482 -62077048 + PB1D10 SINE Alu 3 116 -1 2 1036 1078 193 171 13 chr12 59180641 59180940 -62076590 + Lx9 LINE L1 7298 7643 -1 2 1036 559 349 100 9 chr12 59181209 59181530 -62076000 - ORR1E LTR MaLR -9 350 1 2 1036 24 0 0 0 chr12 59181702 59181726 -62075804 + AT_rich Low_complexity Low_complexity 1 24 0 2 1036 5008 42 2 8 chr12 59182726 59183343 -62074187 + L1Md_F2 LINE L1 5970 6582 0 2 1036 351 221 26 13 chr12 59185913 59185991 -62071539 + B3 SINE B2 129 207 -9 2 1036 253 260 12 105 chr12 59186773 59186859 -62070671 + LTR40a LTR ERVL 53 130 -389 2 1036 22 0 0 0 chr12 59187458 59187480 -62070050 + AT_rich Low_complexity Low_complexity 1 22 0 2 1036 253 322 158 33 chr12 59188372 59188587 -62068943 - L3 LINE CR1 -6 4483 4242 2 1036 264 274 16 0 chr12 59189175 59189237 -62068293 + CT-rich Low_complexity Low_complexity 3 65 0 2 1036 299 293 21 34 chr12 59189242 59189335 -62068195 - PB1D10 SINE Alu -22 95 13 2 1036 198 0 0 0 chr12 59189996 59190018 -62067512 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1036 245 353 136 8 chr12 59190026 59190283 -62067247 - L2 LINE L2 -659 2760 2471 2 1036 198 71 0 0 chr12 59190283 59190311 -62067219 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 2 1036 248 306 175 40 chr12 59190939 59191074 -62066456 - MLT1A1 LTR MaLR -207 201 57 2 1036 2022 24 40 0 chr12 59191074 59191324 -62066206 + L1Md_F3 LINE L1 6312 6571 -13 2 1036 248 306 175 40 chr12 59191324 59191365 -62066165 - MLT1A1 LTR MaLR -352 56 1 2 1036 24 0 0 0 chr12 59191385 59191409 -62066121 + AT_rich Low_complexity Low_complexity 1 24 0 2 1036 230 307 11 0 chr12 59191624 59191712 -62065818 - L1M1 LINE L1 -378 5922 5834 2 1036 7446 61 3 2 chr12 59192161 59193221 -62064309 + L1_Mus1 LINE L1 5499 6559 -8 2 1036 552 68 0 0 chr12 59193222 59193295 -62064235 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 2 1036 450 53 0 0 chr12 59193295 59193352 -62064178 + (GAAAA)n Simple_repeat Simple_repeat 4 60 0 2 1036 468 86 0 0 chr12 59193503 59193573 -62063957 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1036 204 304 36 48 chr12 59193614 59193697 -62063833 - MIR SINE MIR -25 237 156 2 1036 328 129 159 34 chr12 59194798 59194886 -62062644 + RLTR25B LTR ERVK 411 509 -519 2 1036 788 67 19 0 chr12 59194823 59194927 -62062603 + B1_Mus2 SINE Alu 42 147 0 2 1036 386 263 106 48 chr12 59194977 59195081 -62062449 + PB1 SINE Alu 18 127 0 2 1036 221 301 52 96 chr12 59196313 59196449 -62061081 + B1F SINE Alu 10 139 -10 2 1036 343 268 29 49 chr12 59197158 59197260 -62060270 - MIRb SINE MIR -24 244 145 2 1036 269 159 0 0 chr12 59197584 59197628 -62059902 + MLT1D LTR MaLR 140 183 -322 2 1036 224 140 0 23 chr12 59197908 59197952 -62059578 + T-rich Low_complexity Low_complexity 2 44 0 2 1036 384 235 96 19 chr12 59197954 59197985 -62059545 - B1_Mur2 SINE Alu -1 148 120 2 1036 1948 118 72 7 chr12 59197985 59198292 -62059238 - ORR1A2 LTR MaLR 0 327 1 2 1036 384 235 96 19 chr12 59198292 59198364 -62059166 - B1_Mur2 SINE Alu -30 119 38 2 1036 269 184 0 39 chr12 59198319 59198370 -62059160 - MT2B LTR ERVL -365 236 188 2 1036 995 190 211 15 chr12 59198441 59198778 -62058752 + Lx7 LINE L1 7294 7696 0 2 1036 2966 31 0 8 chr12 59199377 59199738 -62057792 - L1Md_F3 LINE L1 -2 6582 6225 2 1036 374 280 134 15 chr12 59200557 59200691 -62056839 + MIR SINE MIR 113 262 0 3 1036 639 71 0 0 chr12 59200699 59200784 -62056746 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 3 1036 468 0 0 0 chr12 59200992 59201044 -62056486 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1036 216 0 0 0 chr12 59201044 59201067 -62056463 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1036 198 224 0 0 chr12 59202083 59202132 -62055398 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 3 1036 2634 64 26 6 chr12 59202305 59202653 -62054877 - L1_Mus2 LINE L1 -4 6562 6208 3 1036 713 116 33 0 chr12 59202653 59202774 -62054756 + L1_Mus2 LINE L1 5945 6069 -497 3 1036 8708 128 31 6 chr12 59202765 59204860 -62052670 + L1Md_F LINE L1 486 2604 -3279 3 1036 4888 69 9 8 chr12 59204867 59205506 -62052024 + L1_Mus2 LINE L1 5927 6566 0 3 1036 313 291 18 140 chr12 59206103 59206267 -62051263 - RMER12 LTR ERVK -466 856 713 3 1036 7435 105 48 27 chr12 59206315 59207593 -62049937 - Lx3_Mus LINE L1 -118 6891 5587 3 1036 1008 17 0 0 chr12 59207973 59208091 -62049439 + (GA)n Simple_repeat Simple_repeat 1 118 0 3 1036 184 200 11 43 chr12 59208529 59208623 -62048907 + (TATG)n Simple_repeat Simple_repeat 4 94 0 3 1036 289 160 5 79 chr12 59208638 59208828 -62048702 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 1036 23 33 0 0 chr12 59209822 59209852 -62047678 + AT_rich Low_complexity Low_complexity 1 30 0 3 1036 23 33 0 0 chr12 59209923 59209953 -62047577 + AT_rich Low_complexity Low_complexity 1 30 0 3 1036 312 27 0 0 chr12 59210233 59210270 -62047260 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1036 18066 2 0 0 chr12 59210389 59213195 -62044335 - L1Md_A LINE L1 0 6582 3777 3 1036 396 0 0 0 chr12 59214323 59214367 -62043163 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1036 456 290 120 23 chr12 59215610 59215868 -62041662 - MER97c DNA MER1_type? -763 327 45 3 1036 10256 141 45 32 chr12 59216412 59218793 -62038737 + L1VL1 LINE L1 644 3074 -624 3 1036 5249 135 35 25 chr12 59218796 59220705 -62036825 + L1Md_F LINE L1 66 1967 -3916 3 1036 195 42 0 0 chr12 59220705 59220729 -62036801 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1036 5249 86 6 1 chr12 59220729 59220773 -62036757 + L1Md_F LINE L1 1968 2016 -3867 3 1036 36947 10 0 2 chr12 59220784 59227202 -62030328 + L1Md_A LINE L1 1 5586 -297 3 1036 9041 3 0 0 chr12 59227202 59228198 -62029332 + L1Md_A LINE L1 5587 6582 0 3 1036 412 151 28 57 chr12 59228199 59228375 -62029155 + (CAGAGA)n Simple_repeat Simple_repeat 4 174 0 3 1036 560 330 42 47 chr12 59228874 59229087 -62028443 - B4 SINE B4 -41 251 40 3 1036 50 59 0 0 chr12 59229112 59229197 -62028333 + AT_rich Low_complexity Low_complexity 1 85 0 3 1036 25375 70 6 2 chr12 59229197 59232770 -62024760 + L1Md_F2 LINE L1 2001 5585 -298 3 1036 7654 58 12 13 chr12 59232771 59233768 -62023762 + L1Md_F2 LINE L1 5587 6582 0 3 1036 22 35 0 0 chr12 59233770 59233799 -62023731 + AT_rich Low_complexity Low_complexity 1 29 0 3 1036 8817 140 16 22 chr12 59233799 59236494 -62021036 + Lx2A LINE L1 4322 7002 -6 3 1036 30 59 0 0 chr12 59237391 59237442 -62020088 + AT_rich Low_complexity Low_complexity 1 51 0 3 1036 1231 94 10 20 chr12 59237442 59237637 -62019893 - L1Md_F2 LINE L1 -4 6578 6386 3 1036 3543 77 10 4 chr12 59237637 59238136 -62019394 + L1Md_F2 LINE L1 5722 6223 -359 3 1036 291 265 87 19 chr12 59238716 59238820 -62018710 + MLT1A1 LTR MaLR 1 111 -297 3 1036 214 216 19 19 chr12 59238900 59238952 -62018578 + CT-rich Low_complexity Low_complexity 3 54 0 3 1036 347 212 80 10 chr12 59239012 59239112 -62018418 + MLT1A1 LTR MaLR 299 405 -3 3 1036 618 314 131 0 chr12 59239591 59239782 -62017748 - B3 SINE B2 0 216 1 3 1036 495 268 57 14 chr12 59239817 59239957 -62017573 + B1_Mur2 SINE Alu 3 148 -1 3 1036 1188 271 95 54 chr12 59240092 59240553 -62016977 + MLT2B1 LTR ERVL 1 480 -40 3 1036 357 24 0 0 chr12 59240553 59240595 -62016935 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1036 304 132 0 0 chr12 59240628 59240681 -62016849 + MLT2B1 LTR ERVL 511 563 -4 3 1036 21 0 0 0 chr12 59240739 59240760 -62016770 + AT_rich Low_complexity Low_complexity 1 21 0 3 1036 195 100 0 0 chr12 59241237 59241267 -62016263 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 1036 21 36 0 0 chr12 59241847 59241875 -62015655 + AT_rich Low_complexity Low_complexity 1 28 0 3 1036 234 220 0 17 chr12 59242072 59242132 -62015398 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1036 421 367 14 3 chr12 59242133 59242357 -62015173 - Lx9 LINE L1 -267 7377 7072 3 1036 5351 174 16 4 chr12 59242513 59243462 -62014068 + Lx2 LINE L1 6038 6997 0 3 1036 3501 127 3 3 chr12 59243486 59244085 -62013445 + L1Md_A LINE L1 616 1205 -5519 3 1036 1187 201 33 40 chr12 59244092 59244367 -62013163 - RLTR46 LTR ERVK -6 314 42 3 1036 584 94 0 0 chr12 59244382 59244467 -62013063 - MMERVK10C-int LTR ERVK -30 7650 7566 3 129 2461 58 0 0 chr12 59244489 59244801 -62012729 - RLTR10-int LTR ERVK -190 1797 1486 3 1037 1752 189 80 38 chr12 59244803 59245254 -62012276 - MMERVK10C-int LTR ERVK -147 7434 6965 3 1037 1268 158 108 0 chr12 59245239 59245479 -62012051 - IAP-d-int LTR ERVK -1270 5272 5007 3 1037 734 199 6 6 chr12 59245479 59245636 -62011894 - IAP-d-int LTR ERVK -6039 503 347 3 1037 526 106 0 23 chr12 59245630 59245717 -62011813 - IAP-d-int LTR ERVK -6365 177 93 3 1037 1179 78 0 22 chr12 59245722 59245906 -62011624 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1037 278 89 99 25 chr12 59245917 59245998 -62011532 + CT-rich Low_complexity Low_complexity 3 89 0 3 1037 618 217 66 0 chr12 59246011 59246209 -62011321 - IAPEY3-int LTR ERVK -6935 745 535 3 1037 316 274 41 69 chr12 59246260 59246405 -62011125 - IAPEY3-int LTR ERVK -7537 143 3 3 1037 1198 211 29 36 chr12 59246415 59246690 -62010840 - RLTR46 LTR ERVK -6 314 42 3 1037 32385 55 1 2 chr12 59246700 59251121 -62006409 + L1Md_F3 LINE L1 1166 5582 -301 3 1037 8033 39 8 2 chr12 59251121 59252107 -62005423 + L1Md_F3 LINE L1 5593 6584 0 3 1037 2579 120 44 7 chr12 59252124 59252446 -62005084 + Lx2 LINE L1 6545 6866 -131 3 1037 189 0 0 0 chr12 59252446 59252467 -62005063 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 3 1037 2579 120 44 7 chr12 59252467 59252580 -62004950 + Lx2 LINE L1 6867 6994 -3 3 1037 213 222 0 0 chr12 59252582 59252636 -62004894 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 3 1037 724 323 52 0 chr12 59254936 59255184 -62002346 + MER2 DNA MER2_type 85 345 0 3 1037 2065 174 63 2 chr12 59255313 59255710 -62001820 - MTC LTR MaLR 0 421 1 3 1037 36751 9 0 1 chr12 59257201 59262989 -61994541 + L1Md_A LINE L1 1 5586 -297 3 1037 9071 2 0 0 chr12 59262989 59263985 -61993545 + L1Md_A LINE L1 5587 6582 0 3 1037 990 183 25 102 chr12 59264545 59264789 -61992741 - URR1B DNA MER1_type 0 225 1 3 1037 684 332 151 46 chr12 59265042 59265604 -61991926 + L2 LINE L2 1026 1646 -1773 3 1037 685 103 8 17 chr12 59265757 59265875 -61991655 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 3 1037 9350 57 2 0 chr12 59266001 59267267 -61990263 - L1Md_F2 LINE L1 -2146 3737 2469 3 1037 14067 48 1 1 chr12 59267266 59269101 -61988429 + L1Md_F2 LINE L1 3752 5586 -297 3 1037 7574 67 3 1 chr12 59269101 59270083 -61987447 + L1Md_F2 LINE L1 5587 6570 -12 3 1037 368 304 259 25 chr12 59270124 59270441 -61987089 + L2 LINE L2 1995 2385 -1034 3 1037 638 354 45 52 chr12 59270480 59270900 -61986630 + L2 LINE L2 2549 2965 -454 3 1037 2869 73 18 33 chr12 59271314 59271709 -61985821 + L1_Mus2 LINE L1 6170 6558 -8 3 1037 212 22 65 22 chr12 59271931 59271977 -61985553 + (TTATA)n Simple_repeat Simple_repeat 2 49 0 3 1037 765 183 0 0 chr12 59272032 59272185 -61985345 + (TA)n Simple_repeat Simple_repeat 1 153 0 3 1037 4248 157 9 6 chr12 59272382 59273072 -61984458 - RLTR17 LTR ERVK 0 692 1 3 1037 2242 246 59 21 chr12 59273113 59273812 -61983718 + L1_Rod LINE L1 441 1165 -6443 3 1037 630 0 0 0 chr12 59273855 59273925 -61983605 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1037 414 0 0 0 chr12 59273925 59273971 -61983559 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1037 255 218 18 0 chr12 59273971 59274026 -61983504 + GA-rich Low_complexity Low_complexity 1 56 0 3 1037 1958 191 57 14 chr12 59274029 59274538 -61982992 + L1_Rod LINE L1 1453 1983 -3864 3 1037 276 233 0 11 chr12 59274550 59274637 -61982893 + Lx9 LINE L1 7558 7643 -1 3 1037 699 225 49 92 chr12 59274949 59275233 -61982297 + RMER1A Other Other 759 1030 0 3 1037 301 339 93 21 chr12 59276194 59276772 -61980758 + L1MEf LINE L1 616 1235 -4965 3 1037 8224 98 7 15 chr12 59276932 59278282 -61979248 + MusHAL1 LINE L1 769 2108 -604 3 1037 9464 137 35 9 chr12 59278266 59280712 -61976818 + Lx LINE L1 4151 6654 0 3 1037 227 56 56 0 chr12 59280920 59280956 -61976574 + (CATA)n Simple_repeat Simple_repeat 1 38 0 3 1037 631 226 141 16 chr12 59280967 59281151 -61976379 - B3 SINE B2 -6 210 4 3 1037 833 322 117 42 chr12 59282286 59282792 -61974738 + MER77 LTR ERVL 58 601 -6 3 1037 254 328 98 38 chr12 59282844 59283028 -61974502 + L2 LINE L2 414 608 -2811 3 1037 497 306 40 6 chr12 59283052 59283226 -61974304 + B3A SINE B2 1 180 -18 3 1037 265 270 0 31 chr12 59283285 59283350 -61974180 - ID4 SINE ID -19 64 2 3 1037 360 314 38 6 chr12 59283701 59283858 -61973672 - Lx8 LINE L1 -665 6808 6647 3 1037 1343 307 119 41 chr12 59283872 59284241 -61973289 - Lx8 LINE L1 -888 6585 6174 3 1037 474 18 0 0 chr12 59284241 59284296 -61973234 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1037 1429 281 107 31 chr12 59284296 59285271 -61972259 - Lx8 LINE L1 -1300 6173 5113 3 1037 264 122 0 0 chr12 59285279 59285320 -61972210 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 3 1037 603 182 0 5 chr12 59285320 59285436 -61972094 - B1_Mur3 SINE Alu 0 149 40 3 1037 812 290 42 49 chr12 59285455 59285904 -61971626 - L1M2 LINE L1 -962 5181 4736 3 1037 930 287 37 9 chr12 59285940 59286264 -61971266 + L1_Rod LINE L1 3769 4101 -1746 3 1037 2144 298 81 68 chr12 59286262 59286559 -61970971 - Lx8 LINE L1 -2112 3735 3461 3 1037 2715 61 31 0 chr12 59286559 59286919 -61970611 - L1Md_F3 LINE L1 -16 6568 6198 3 1037 2144 298 81 68 chr12 59286919 59289080 -61968450 - Lx8 LINE L1 -2387 3460 1244 3 1037 36052 44 0 3 chr12 59289059 59295343 -61962187 - L1Md_T LINE L1 0 6585 222 3 1037 432 0 0 0 chr12 59295471 59295519 -61962011 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1037 7698 147 42 4 chr12 59295558 59297047 -61960483 - Lx2 LINE L1 -5 6992 5452 3 1037 339 319 5 16 chr12 59297039 59297224 -61960306 - Lx8 LINE L1 -6465 1143 961 3 1037 318 308 59 82 chr12 59298307 59298631 -61958899 - MLT1B LTR MaLR -123 382 6 3 1037 354 322 119 24 chr12 59298994 59299204 -61958326 + LTR33C LTR ERVL 400 629 0 3 1037 309 290 9 53 chr12 59299893 59300006 -61957524 - MLT1A1 LTR MaLR -8 400 293 3 1037 344 260 53 30 chr12 59302827 59302958 -61954572 - CYRA11_Mm Unknown Y-chromosome -245 372 239 3 1037 654 125 20 135 chr12 59302850 59302998 -61954532 + URR1B DNA MER1_type 51 181 -44 3 1037 311 290 39 20 chr12 59303679 59303805 -61953725 + MIRb SINE MIR 2 139 -129 3 1037 456 179 41 21 chr12 59303805 59303902 -61953628 - MTD LTR MaLR -310 109 11 3 1037 327 303 135 20 chr12 59305286 59305474 -61952056 - MIR SINE MIR -20 248 47 3 1037 241 36 53 35 chr12 59305799 59305856 -61951674 + (TTTTTG)n Simple_repeat Simple_repeat 2 59 0 4 1037 724 256 115 0 chr12 59306809 59307000 -61950530 - B3 SINE B2 -2 214 2 4 1037 1056 251 92 25 chr12 59307077 59307404 -61950126 - MTD LTR MaLR -29 390 42 4 1037 291 390 11 0 chr12 59307683 59307778 -61949752 + L2b LINE L2 3265 3360 -15 4 1037 255 352 65 0 chr12 59309749 59309857 -61947673 - L2c LINE L2 -38 3349 3235 4 1037 490 275 179 34 chr12 59310265 59310645 -61946885 - L1MB7 LINE L1 -17 6167 5733 4 1037 364 52 52 0 chr12 59311295 59311353 -61946177 + (TTTA)n Simple_repeat Simple_repeat 3 63 0 4 1037 23 0 0 0 chr12 59315117 59315140 -61942390 + GC_rich Low_complexity Low_complexity 1 23 0 4 1037 22 0 0 0 chr12 59316054 59316076 -61941454 + AT_rich Low_complexity Low_complexity 1 22 0 4 1037 401 66 0 16 chr12 59317191 59317253 -61940277 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1037 243 173 0 0 chr12 59317269 59317321 -61940209 + GA-rich Low_complexity Low_complexity 3 54 0 4 1037 282 268 229 25 chr12 59321075 59321232 -61936298 + MIRb SINE MIR 26 214 -54 4 1037 569 339 63 25 chr12 59321619 59321932 -61935598 + LTR40c LTR ERVL 141 510 -9 4 1037 449 303 12 61 chr12 59322372 59322537 -61934993 + RSINE1 SINE B4 3 159 -6 4 1037 525 32 0 0 chr12 59322540 59322603 -61934927 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1037 716 111 8 0 chr12 59323383 59323500 -61934030 + (GA)n Simple_repeat Simple_repeat 1 118 0 4 1037 239 254 120 57 chr12 59325216 59325358 -61932172 + MIRc SINE MIR 97 242 -20 4 1037 640 272 0 39 chr12 59325583 59325736 -61931794 - B3A SINE B2 -2 196 50 4 1037 192 356 157 10 chr12 59325852 59325954 -61931576 + MER5B DNA MER1_type 33 149 -29 4 1037 429 284 28 56 chr12 59326186 59326328 -61931202 + B3A SINE B2 14 151 -47 4 1037 1304 29 11 33 chr12 59327469 59327650 -61929880 - L1Md_F3 LINE L1 0 6584 6408 4 1037 21 0 0 0 chr12 59327859 59327880 -61929650 + AT_rich Low_complexity Low_complexity 1 21 0 4 1037 1184 241 31 81 chr12 59328237 59328620 -61928910 + RMER19C LTR ERVK 299 611 0 4 1037 244 294 92 65 chr12 59328620 59328773 -61928757 - L2a LINE L2 -85 3341 3185 4 1037 252 0 0 0 chr12 59329093 59329121 -61928409 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1037 276 30 0 0 chr12 59329568 59329601 -61927929 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1037 4360 126 13 3 chr12 59331267 59331968 -61925562 - Lx LINE L1 -20 6634 5927 4 1037 4663 126 18 1 chr12 59331971 59332840 -61924690 + Lx LINE L1 5042 5925 -729 4 1037 599 224 172 6 chr12 59332992 59333149 -61924381 + ORR1B2 LTR MaLR 1 183 -184 4 1037 244 314 65 91 chr12 59333319 59333396 -61924134 + MLT1K LTR MaLR 112 186 -409 4 1037 701 277 67 88 chr12 59333650 59333935 -61923595 + B4A SINE B4 14 292 0 4 1037 678 58 0 0 chr12 59333963 59334050 -61923480 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1037 205 205 0 0 chr12 59334390 59334429 -61923101 + T-rich Low_complexity Low_complexity 1 39 0 4 1037 459 169 0 0 chr12 59334945 59335022 -61922508 - RMER1C Other Other -175 1167 1091 4 1037 892 315 50 17 chr12 59335007 59335307 -61922223 + RMER1C Other Other 571 880 -462 4 1037 563 359 24 0 chr12 59335307 59335474 -61922056 - B4A SINE B4 -121 171 1 4 1037 948 299 71 118 chr12 59335475 59335538 -61921992 - L1MDa LINE L1 -2389 4396 4335 4 1037 201 39 0 0 chr12 59335538 59335564 -61921966 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1037 948 299 71 118 chr12 59335564 59335678 -61921852 - L1MDa LINE L1 -2451 4334 4203 4 1037 2060 137 68 3 chr12 59335678 59336045 -61921485 - Lx2 LINE L1 0 6997 6607 4 1037 948 299 71 118 chr12 59336045 59337157 -61920373 - L1MDa LINE L1 -2583 4202 3169 4 1037 448 325 18 32 chr12 59337824 59338252 -61919278 - L1MDa LINE L1 -3930 2559 2081 4 1037 1191 263 11 11 chr12 59338268 59338541 -61918989 + MTD LTR MaLR 3 275 -144 4 1037 390 286 68 55 chr12 59338703 59338911 -61918619 - L1MDa LINE L1 -5142 1742 1533 4 1037 956 54 123 0 chr12 59338911 59339041 -61918489 - B1_Mus2 SINE Alu 0 147 2 4 1037 390 286 68 55 chr12 59339041 59339069 -61918461 - L1MDa LINE L1 -5352 1532 1504 4 1037 718 320 7 66 chr12 59340567 59340694 -61916836 + RMER15 LTR ERVL 290 415 -160 4 1037 633 27 0 0 chr12 59340694 59340769 -61916761 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1037 718 320 7 66 chr12 59340769 59340929 -61916601 + RMER15 LTR ERVL 416 560 -15 4 1037 243 61 0 0 chr12 59341123 59341156 -61916374 + (TAAAAA)n Simple_repeat Simple_repeat 5 37 0 4 1037 251 275 0 91 chr12 59341307 59341321 -61916209 + MT2B LTR ERVL 153 232 -369 4 1037 526 95 0 0 chr12 59341321 59341395 -61916135 + B1_Mus2 SINE Alu 2 75 -72 4 1037 198 167 0 0 chr12 59341395 59341431 -61916099 + A-rich Low_complexity Low_complexity 1 36 0 4 1037 341 309 52 47 chr12 59341835 59342040 -61915490 - MLT1J1 LTR MaLR -7 505 244 4 1037 259 337 115 60 chr12 59342143 59342326 -61915204 + MLT1I LTR MaLR 24 216 -195 4 1037 34 0 0 0 chr12 59344455 59344489 -61913041 + AT_rich Low_complexity Low_complexity 1 34 0 4 1037 4471 59 23 2 chr12 59344746 59345321 -61912209 - LTRIS_Mus LTR ERV1 0 587 1 4 1037 1128 78 0 0 chr12 59345411 59345553 -61911977 + B1_Mus1 SINE Alu 1 142 -6 4 1037 196 152 68 0 chr12 59345559 59345618 -61911912 + GA-rich Low_complexity Low_complexity 3 65 0 4 1037 1061 52 30 0 chr12 59346812 59346946 -61910584 + B1_Mm SINE Alu 1 138 -9 4 1037 209 30 61 0 chr12 59346946 59346979 -61910551 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1037 243 0 0 0 chr12 59348105 59348132 -61909398 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1037 377 308 19 9 chr12 59348157 59348262 -61909268 + PB1D10 SINE Alu 5 110 -7 4 1037 225 0 0 0 chr12 59348430 59348455 -61909075 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1037 29 0 0 0 chr12 59348628 59348657 -61908873 + AT_rich Low_complexity Low_complexity 1 29 0 4 1037 492 62 0 0 chr12 59348807 59348871 -61908659 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 1037 2532 70 6 3 chr12 59348880 59349222 -61908308 - L1_Mus2 LINE L1 0 6566 6224 4 1037 3379 85 0 11 chr12 59349811 59350287 -61907243 + L1Md_F2 LINE L1 6112 6582 0 4 1037 440 296 43 43 chr12 59350640 59350848 -61906682 + L1MC5 LINE L1 6634 6841 -1120 4 1037 796 143 40 69 chr12 59350893 59351066 -61906464 + URR1A DNA MER1_type 59 226 0 4 1037 21 57 0 0 chr12 59351220 59351255 -61906275 + AT_rich Low_complexity Low_complexity 1 35 0 4 1037 263 295 122 53 chr12 59351582 59351986 -61905544 + L1MD LINE L1 2617 3071 -3075 4 1037 2582 261 52 15 chr12 59352013 59352224 -61905306 + Lx6 LINE L1 6683 6914 -546 4 1037 188 0 74 0 chr12 59352224 59352251 -61905279 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 1037 2582 261 52 15 chr12 59352251 59352789 -61904741 + Lx6 LINE L1 6915 7459 -1 4 1037 484 341 55 39 chr12 59352823 59353134 -61904396 + L1MC LINE L1 3142 3457 -2689 4 1037 414 0 0 0 chr12 59353137 59353183 -61904347 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1037 395 308 223 20 chr12 59353225 59353579 -61903951 + L1MD LINE L1 3616 4041 -2105 4 1037 383 229 173 9 chr12 59353589 59353699 -61903831 + B1F SINE Alu 1 128 -21 4 1037 888 301 91 42 chr12 59354112 59354777 -61902753 + L1ME1 LINE L1 5332 6036 -143 4 1037 222 116 0 0 chr12 59354887 59354930 -61902600 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1037 1070 103 14 0 chr12 59354939 59355085 -61902445 - B1_Mur4 SINE Alu -2 148 1 4 1037 21 0 0 0 chr12 59355211 59355232 -61902298 + AT_rich Low_complexity Low_complexity 1 21 0 4 1037 2526 176 23 149 chr12 59355373 59356072 -61901458 + RMER19C LTR ERVK 1 611 0 4 1037 226 330 108 49 chr12 59356077 59356300 -61901230 - L4 LINE RTE -1065 964 729 4 1037 389 331 126 31 chr12 59356971 59357457 -61900073 + L1ME1 LINE L1 6518 7049 -993 4 1037 28 0 0 0 chr12 59357859 59357887 -61899643 + AT_rich Low_complexity Low_complexity 1 28 0 4 1037 293 318 0 6 chr12 59357954 59358076 -61899454 - B3A SINE B2 -44 154 1 4 1037 694 342 68 64 chr12 59358079 59359101 -61898429 + L1M4 LINE L1 241 1266 -5480 4 1037 6091 101 12 0 chr12 59359109 59359972 -61897558 - Lx LINE L1 -164 6490 5618 4 1037 658 292 68 58 chr12 59360517 59361030 -61896500 + L1M4 LINE L1 2290 2807 -4042 4 1037 3454 192 74 18 chr12 59361012 59361849 -61895681 + RMER1B Other Other 105 1056 -10 4 1037 2311 286 123 25 chr12 59361848 59363251 -61894279 + L1M4 LINE L1 3981 5520 -1325 4 1037 237 245 40 50 chr12 59363280 59363379 -61894151 - MARNA DNA Mariner -38 548 451 4 1037 1143 278 126 24 chr12 59363388 59363866 -61893664 + L1M4 LINE L1 5657 6194 -808 4 1037 446 0 0 18 chr12 59363866 59363921 -61893609 + (TAA)n Simple_repeat Simple_repeat 2 55 0 4 1037 1143 264 102 17 chr12 59363921 59364198 -61893332 + L1M4 LINE L1 6195 6496 -506 4 1037 256 67 0 43 chr12 59364726 59364773 -61892757 - Lx6 LINE L1 -1 7459 7415 4 1037 1837 263 153 8 chr12 59364836 59365502 -61892028 - Lx8 LINE L1 0 7473 6711 4 1037 267 351 0 0 chr12 59366451 59366545 -61890985 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 4 1037 1317 151 255 30 chr12 59371064 59371425 -61886105 + RMER10A LTR ERVL 1 442 0 4 1037 426 297 92 68 chr12 59372347 59372553 -61884977 - B3A SINE B2 -3 213 3 4 1037 1644 197 30 46 chr12 59372959 59373332 -61884198 - ORR1D1 LTR MaLR -3 371 5 4 1037 468 35 0 0 chr12 59373332 59373390 -61884140 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1037 325 161 0 79 chr12 59373870 59373971 -61883559 + Lx4B LINE L1 6961 7053 -5 4 1037 256 266 12 12 chr12 59374028 59374108 -61883422 + MER5A1 DNA MER1_type 87 166 0 4 1038 798 172 0 7 chr12 59376210 59376362 -61881168 - Lx6 LINE L1 -1 7459 7309 4 1038 3051 224 110 17 chr12 59376364 59377085 -61880445 - Lx6 LINE L1 -345 7115 6328 4 1038 11891 223 60 115 chr12 59377079 59377449 -61880081 - L1_Mur2 LINE L1 -24 5853 5443 4 1038 247 24 22 67 chr12 59377449 59377494 -61880036 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1038 11891 223 60 115 chr12 59377494 59378277 -61879253 - L1_Mur2 LINE L1 -435 5442 4633 4 1038 268 23 68 0 chr12 59378277 59378321 -61879209 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1038 11891 223 60 115 chr12 59378321 59378354 -61879176 - L1_Mur2 LINE L1 -1245 4632 4632 4 1038 4418 65 41 28 chr12 59378354 59378970 -61878560 - L1Md_F2 LINE L1 0 6582 5959 4 1038 249 30 0 0 chr12 59378970 59379003 -61878527 + RLTR10B LTR ERVK 4 36 -256 4 1038 2078 53 0 50 chr12 59379003 59379302 -61878228 + RLTR10B LTR ERVK 9 292 0 4 1038 11891 223 60 115 chr12 59379302 59380905 -61876625 - L1_Mur2 LINE L1 -1245 4632 3000 4 1038 188 35 35 0 chr12 59380905 59380934 -61876596 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 1038 11891 223 60 115 chr12 59380934 59382067 -61875463 - L1_Mur2 LINE L1 -2878 2999 1828 4 1038 2882 303 84 32 chr12 59385506 59386727 -61870803 + Lx8 LINE L1 6173 7457 -16 5 1038 343 306 126 15 chr12 59386802 59387008 -61870522 + MIRc SINE MIR 38 266 -2 5 1038 554 316 19 46 chr12 59387192 59387454 -61870076 - MIR SINE MIR 0 262 8 5 1038 232 161 16 16 chr12 59387563 59387626 -61869904 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1038 929 314 84 4 chr12 59388204 59388479 -61869051 + MLT1A0 LTR MaLR 38 334 -31 5 1038 24 0 0 0 chr12 59389229 59389253 -61868277 + AT_rich Low_complexity Low_complexity 1 24 0 5 1038 272 27 27 0 chr12 59389887 59389924 -61867606 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1038 1090 59 15 0 chr12 59389924 59390059 -61867471 - B1_Mus1 SINE Alu -11 137 1 5 1038 255 253 22 22 chr12 59390836 59390854 -61866676 + polypyrimidine Low_complexity Low_complexity 72 89 0 5 1038 4650 77 0 2 chr12 59390854 59391456 -61866074 - L1_Mus1 LINE L1 0 6567 5967 5 1038 255 253 22 22 chr12 59391456 59391526 -61866004 + CT-rich Low_complexity Low_complexity 1 71 0 5 1038 3385 44 136 0 chr12 59391759 59392193 -61865337 + MT2_Mm LTR ERVL 1 493 0 5 1038 8397 44 45 3 chr12 59392197 59393249 -61864281 + MTA_Mm-int LTR MaLR 3 1098 0 5 1038 3410 38 0 0 chr12 59393249 59393645 -61863885 + MTA_Mm LTR MaLR 1 396 0 5 1038 234 215 0 15 chr12 59394209 59394275 -61863255 - HAL1 LINE L1 -2329 178 114 5 1038 1892 75 8 15 chr12 59395420 59395722 -61861808 - MTA_Mm LTR MaLR -76 343 51 5 1038 3503 18 2 0 chr12 59395819 59396214 -61861316 + MTA_Mm LTR MaLR 1 396 0 5 1038 8974 41 4 1 chr12 59396214 59397309 -61860221 + MTA_Mm-int LTR MaLR 1 1098 0 5 1038 3503 18 2 0 chr12 59397309 59397704 -61859826 + MTA_Mm LTR MaLR 1 396 0 5 1038 270 0 0 0 chr12 59398718 59398748 -61858782 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1038 641 47 0 0 chr12 59398748 59398833 -61858697 - Lx3_Mus LINE L1 -1089 5920 5836 5 1038 6972 102 25 6 chr12 59398833 59399867 -61857663 + Lx3A LINE L1 5912 6965 -16 5 1038 225 0 0 0 chr12 59399868 59399893 -61857637 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 1038 385 234 43 14 chr12 59400559 59400698 -61856832 + L1MC LINE L1 2811 2953 -3193 5 1038 709 89 15 13 chr12 59400699 59400831 -61856699 + B1_Mus1 SINE Alu 1 133 -16 5 1038 610 122 0 0 chr12 59400842 59400932 -61856598 - Lx7 LINE L1 -1120 6340 6251 5 1038 9518 206 33 34 chr12 59400933 59401548 -61855982 - Lx7 LINE L1 -1564 6132 5521 5 1038 929 184 30 72 chr12 59401548 59401783 -61855747 + URR1B DNA MER1_type 1 225 0 5 1038 9518 175 44 40 chr12 59401783 59402658 -61854872 - Lx7 LINE L1 -360 5520 4632 5 1038 333 0 0 0 chr12 59402658 59402695 -61854835 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1038 9518 175 44 40 chr12 59402695 59402921 -61854609 - Lx7 LINE L1 -1249 4631 4433 5 1038 2782 64 14 3 chr12 59402921 59403283 -61854247 - L1_Mus2 LINE L1 0 6566 6201 5 1038 9518 175 44 40 chr12 59403283 59404036 -61853494 - Lx7 LINE L1 -1448 4432 3651 5 1038 2432 203 138 13 chr12 59404036 59404579 -61852951 + RMER19C LTR ERVK 1 611 0 5 1038 9518 222 64 35 chr12 59404579 59404887 -61852643 - Lx7 LINE L1 -2230 3650 3271 5 1038 4577 197 96 15 chr12 59404887 59406191 -61851339 - Lx7 LINE L1 -4414 1466 56 5 1038 28 0 0 0 chr12 59406199 59406227 -61851303 + AT_rich Low_complexity Low_complexity 1 28 0 5 1038 376 276 92 0 chr12 59406244 59406407 -61851123 - L1MA6 LINE L1 -19 6281 6104 5 1038 353 98 179 38 chr12 59406843 59406949 -61850581 + Lx9 LINE L1 7524 7644 0 5 1038 2849 96 58 17 chr12 59407539 59407706 -61849824 + RLTR44C LTR ERVK 1 167 -335 5 1038 572 0 15 0 chr12 59407706 59407774 -61849756 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1038 2849 96 58 17 chr12 59407774 59408072 -61849458 + RLTR44C LTR ERVK 168 483 -19 5 1038 543 31 0 0 chr12 59408734 59408799 -61848731 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 5 1038 288 70 0 0 chr12 59409866 59409909 -61847621 + (T)n Simple_repeat Simple_repeat 1 43 0 5 1038 24 0 0 0 chr12 59410726 59410750 -61846780 + AT_rich Low_complexity Low_complexity 1 24 0 5 1038 1019 70 0 89 chr12 59411706 59411864 -61845666 - B1_Mus1 SINE Alu -2 146 3 5 1038 417 294 63 23 chr12 59412673 59412847 -61844683 - MER5A DNA MER1_type -6 183 3 5 1038 7558 172 23 19 chr12 59413033 59414290 -61843240 + L1VL4 LINE L1 149 1398 -2161 5 1038 189 0 0 0 chr12 59414290 59414311 -61843219 + (TTA)n Simple_repeat Simple_repeat 1 21 0 5 1038 7558 108 29 9 chr12 59414311 59415093 -61842437 + L1VL4 LINE L1 1399 2206 -1353 5 1038 35929 43 2 3 chr12 59415093 59421104 -61836426 + L1Md_T LINE L1 94 6194 -391 5 1038 13521 122 28 9 chr12 59421102 59424291 -61833239 + L1_Mus3 LINE L1 3380 6631 -7 5 1038 745 144 14 0 chr12 59424300 59424446 -61833084 + GA-rich Low_complexity Low_complexity 1 148 0 5 1038 314 288 73 41 chr12 59424750 59424873 -61832657 - MLT1I LTR MaLR -186 225 99 5 1038 5305 180 38 6 chr12 59425544 59426573 -61830957 + Lx2B LINE L1 5934 6995 -5 5 1038 347 229 53 40 chr12 59426687 59426837 -61830693 - L1MA9 LINE L1 -1 6311 6160 5 1038 396 245 0 0 chr12 59426848 59426991 -61830539 + (TG)n Simple_repeat Simple_repeat 2 144 0 5 1038 517 303 206 11 chr12 59427764 59428051 -61829479 - MLT1A0 LTR MaLR -3 362 20 5 1038 2508 87 0 25 chr12 59428101 59428468 -61829062 + L1Md_F2 LINE L1 6213 6570 -12 5 1038 216 355 105 65 chr12 59429052 59429299 -61828231 + L2b LINE L2 2577 2833 -586 5 1038 197 384 73 28 chr12 59429405 59429582 -61827948 + L2b LINE L2 2973 3157 -218 5 1038 234 328 128 0 chr12 59429758 59429883 -61827647 + MIRc SINE MIR 13 153 -115 5 1038 713 340 14 14 chr12 59429914 59430126 -61827404 - ID_B1 SINE B4 -7 217 6 5 1038 1176 132 11 0 chr12 59430160 59430349 -61827181 - B2_Mm1t SINE B2 0 193 3 5 1038 473 324 7 33 chr12 59431550 59431700 -61825830 + B1F SINE Alu 4 149 0 5 1038 267 260 40 40 chr12 59432402 59432502 -61825028 + L2a LINE L2 3327 3426 0 5 1038 270 0 0 0 chr12 59433094 59433124 -61824406 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 5 1038 233 314 0 0 chr12 59433806 59433876 -61823654 - L1M3 LINE L1 -370 5921 5852 5 1038 6313 57 7 16 chr12 59433904 59434763 -61822767 - L1_Mus2 LINE L1 0 6566 5716 5 1038 401 307 75 13 chr12 59434818 59435046 -61822484 - L1M3 LINE L1 -402 5787 5546 5 1038 2123 122 3 15 chr12 59435068 59435393 -61822137 - ORR1A4 LTR MaLR -8 321 1 5 1038 10665 144 17 63 chr12 59435393 59437441 -61820089 - ORR1A4-int LTR MaLR 0 1963 10 5 1038 1244 142 10 5 chr12 59437444 59437642 -61819888 - ORR1A4 LTR MaLR -2 392 194 5 1038 1272 171 1 5 chr12 59437642 59437879 -61819651 - Lx3C LINE L1 -1091 5885 5663 5 1038 324 0 0 0 chr12 59437897 59437933 -61819597 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1038 857 279 70 44 chr12 59438088 59438731 -61818799 - L1MC1 LINE L1 -283 6050 5325 5 1038 351 0 0 0 chr12 59439130 59439169 -61818361 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1038 525 44 0 0 chr12 59439169 59439236 -61818294 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1038 582 299 7 45 chr12 59439236 59439390 -61818140 - B3A SINE B2 -50 148 1 5 1038 2695 68 0 0 chr12 59439712 59440106 -61817424 - L1_Mm LINE L1 -4125 1758 1365 5 1038 5939 34 0 0 chr12 59440106 59440806 -61816724 + L1Md_T LINE L1 5883 6582 0 5 1038 909 298 57 32 chr12 59441234 59441674 -61815856 + Lx9 LINE L1 7006 7456 -188 5 1038 387 0 0 0 chr12 59441707 59441750 -61815780 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1038 507 234 96 59 chr12 59441773 59441909 -61815621 + U1 snRNA snRNA 1 141 -24 5 1038 2463 199 69 12 chr12 59441956 59442537 -61814993 + Lx9 LINE L1 6796 7409 -235 5 1038 233 315 15 37 chr12 59442605 59442740 -61814790 - Lx9 LINE L1 -145 7499 7368 5 1038 622 178 128 0 chr12 59442747 59442927 -61814603 + Lx9 LINE L1 7441 7643 -1 5 1038 550 291 61 11 chr12 59443945 59444126 -61813404 + RMER30 DNA MER1_type 6 195 -7 5 1038 386 374 6 12 chr12 59444355 59444520 -61813010 + L1_Rod LINE L1 513 676 -6932 5 1038 5983 216 65 25 chr12 59444623 59445644 -61811886 + L1_Rod LINE L1 683 1730 -4117 5 1038 2868 131 4 45 chr12 59445644 59446138 -61811392 + Lx2B LINE L1 6516 6989 -11 5 1038 5983 207 109 43 chr12 59446138 59446681 -61810849 + L1_Rod LINE L1 1731 2345 -3502 5 1038 282 87 0 0 chr12 59446681 59446727 -61810803 + (CTAA)n Simple_repeat Simple_repeat 3 48 0 5 1038 5983 207 109 43 chr12 59446727 59447513 -61810017 + L1_Rod LINE L1 2346 3180 -2667 5 1038 654 49 0 0 chr12 59447513 59447595 -61809935 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 5 1038 5983 207 109 43 chr12 59447595 59447746 -61809784 + L1_Rod LINE L1 3181 3328 -2519 5 1038 4135 217 68 62 chr12 59447744 59448659 -61808871 + L1_Rod LINE L1 3810 4724 -1123 5 1038 396 40 0 0 chr12 59448659 59448709 -61808821 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1038 4135 217 68 62 chr12 59448709 59449127 -61808403 + L1_Rod LINE L1 4725 5151 -696 5 1038 652 94 19 0 chr12 59449228 59449334 -61808196 + (GA)n Simple_repeat Simple_repeat 1 108 0 5 1038 506 125 21 0 chr12 59449335 59449431 -61808099 - L1Md_F2 LINE L1 -14 6568 6471 5 1038 32011 88 14 22 chr12 59449434 59455654 -61801876 - L1Md_F2 LINE L1 -12 6570 409 5 1038 335 213 28 0 chr12 59456537 59456678 -61800852 + (TA)n Simple_repeat Simple_repeat 1 145 0 5 1038 268 331 48 36 chr12 59456957 59457208 -61800322 + L1MD3 LINE L1 7730 7983 -12 5 1038 213 344 87 6 chr12 59457269 59457430 -61800100 + L2a LINE L2 2926 3099 -327 5 1038 267 302 66 25 chr12 59457436 59457558 -61799972 - MTEa LTR MaLR -8 371 245 5 1038 6266 146 60 72 chr12 59457725 59458119 -61799411 - Lx4B LINE L1 -49 7009 6598 5 1038 2065 76 26 29 chr12 59458119 59458431 -61799099 + L1_Mus3 LINE L1 6317 6627 -11 5 1038 186 43 0 0 chr12 59458434 59458457 -61799073 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1038 6266 148 60 71 chr12 59458457 59459370 -61798160 - Lx4B LINE L1 -461 6597 5730 5 1038 25 75 0 0 chr12 59459886 59459939 -61797591 + AT_rich Low_complexity Low_complexity 1 53 0 5 1038 824 233 106 13 chr12 59459946 59460181 -61797349 + Lx9 LINE L1 6748 7004 -640 5 1038 320 333 96 22 chr12 59460250 59460428 -61797102 - B3A SINE B2 -1 197 7 5 1038 525 32 0 0 chr12 59460823 59460886 -61796644 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1038 22 35 0 0 chr12 59461185 59461214 -61796316 + AT_rich Low_complexity Low_complexity 1 29 0 5 1038 644 238 170 14 chr12 59461795 59462142 -61795388 - Lx9 LINE L1 0 7644 7244 5 1038 395 309 113 2 chr12 59462267 59462483 -61795047 - MLT2B4 LTR ERVL -150 264 3 5 1038 3003 157 21 8 chr12 59462808 59463334 -61794196 + L1_Mur2 LINE L1 5329 5861 -16 5 1038 4015 182 90 15 chr12 59463332 59463962 -61793568 + Lx4B LINE L1 6161 6800 -258 5 1038 2947 69 13 3 chr12 59463962 59464354 -61793176 - MTA_Mm LTR MaLR 0 396 1 5 1038 4015 182 90 15 chr12 59464354 59464542 -61792988 + Lx4B LINE L1 6801 7041 -17 5 1038 1647 138 42 18 chr12 59465145 59465476 -61792054 - Lx7 LINE L1 0 7696 7358 5 1038 2104 106 32 0 chr12 59465529 59465841 -61791689 - Lx3_Mus LINE L1 -453 5433 5112 5 1038 10392 76 6 12 chr12 59465841 59467430 -61790100 + Lx3_Mus LINE L1 5437 7009 0 5 1038 2604 202 32 20 chr12 59467522 59468078 -61789452 - Lx7 LINE L1 -454 7242 6680 5 1038 351 298 164 5 chr12 59468235 59468424 -61789106 + L1MC LINE L1 5539 5757 -2125 5 1038 372 167 0 0 chr12 59468517 59468589 -61788941 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1038 303 270 45 45 chr12 59468590 59468722 -61788808 + L1ME4a LINE L1 5970 6101 -23 6 1038 853 285 78 74 chr12 59468727 59469268 -61788262 + LTR55 LTR ERV 1 543 -5 6 1038 270 81 0 0 chr12 59469469 59469506 -61788024 + (TTG)n Simple_repeat Simple_repeat 1 37 0 6 1038 198 0 0 0 chr12 59471897 59471919 -61785611 + (TTG)n Simple_repeat Simple_repeat 1 22 0 6 1038 412 386 58 61 chr12 59471924 59472335 -61785195 + MLT1J LTR MaLR 26 435 -77 6 1038 2064 238 112 14 chr12 59472725 59473280 -61784250 + Lx9 LINE L1 6418 7026 -618 6 1038 675 296 100 30 chr12 59473315 59473715 -61783815 + Lx9 LINE L1 7190 7617 -27 6 1038 624 317 33 22 chr12 59474669 59474853 -61782677 + ID_B1 SINE B4 14 199 -25 6 1038 261 0 0 0 chr12 59475911 59475940 -61781590 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1038 1226 47 0 0 chr12 59476106 59476254 -61781276 + B1_Mus1 SINE Alu 1 148 0 6 1038 246 239 28 0 chr12 59476943 59477014 -61780516 - L1MB1 LINE L1 -125 6064 5992 6 1038 871 299 23 19 chr12 59477129 59477388 -61780142 - MER82 DNA MER2_type -243 410 151 6 1038 338 275 129 5 chr12 59477404 59477598 -61779932 + L1MA9 LINE L1 5999 6216 -96 6 1038 378 0 0 0 chr12 59477715 59477757 -61779773 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1038 375 287 37 9 chr12 59477894 59478003 -61779527 + PB1D10 SINE Alu 6 117 0 6 1038 265 333 118 19 chr12 59478154 59478365 -61779165 - L2 LINE L2 -425 2994 2763 6 1038 274 45 57 57 chr12 59478441 59478511 -61779019 + A-rich Low_complexity Low_complexity 2 71 0 6 1038 209 308 208 0 chr12 59478661 59478791 -61778739 + MIRb SINE MIR 101 257 -11 6 1038 2575 234 24 6 chr12 59479200 59479733 -61777797 + Lx5 LINE L1 6507 7049 -1 6 1038 2266 142 10 13 chr12 59479854 59480238 -61777292 - Lx2B LINE L1 -5 6995 6613 6 1038 3282 141 4 4 chr12 59480238 59480779 -61776751 - L1_Mur2 LINE L1 -628 5249 4709 6 1038 5141 149 5 8 chr12 59480778 59481673 -61775857 + L1_Mur2 LINE L1 3816 4707 -1170 6 1038 30 69 0 0 chr12 59482209 59482267 -61775263 + AT_rich Low_complexity Low_complexity 1 58 0 6 1038 25 0 0 0 chr12 59482449 59482474 -61775056 + AT_rich Low_complexity Low_complexity 1 25 0 6 1038 10376 163 15 9 chr12 59482488 59485198 -61772332 - Lx2B LINE L1 -52 7006 4167 6 1038 198 91 0 0 chr12 59485269 59485302 -61772228 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 6 1038 21 36 0 0 chr12 59485688 59485716 -61771814 + AT_rich Low_complexity Low_complexity 1 28 0 6 1038 243 0 0 0 chr12 59485774 59485801 -61771729 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 1038 1696 257 124 8 chr12 59487470 59488225 -61769305 - RCHARR1 DNA MER1_type -129 845 3 6 1038 5333 60 18 1 chr12 59490095 59490862 -61766668 - L1Md_F2 LINE L1 -618 5964 5185 6 1038 4722 74 9 8 chr12 59490888 59491528 -61766002 + L1Md_F2 LINE L1 5926 6566 -16 6 1038 28 29 0 0 chr12 59491528 59491563 -61765967 + AT_rich Low_complexity Low_complexity 1 35 0 6 1038 198 249 50 23 chr12 59491691 59491760 -61765770 - L2a LINE L2 -1 3425 3303 6 1038 438 248 49 10 chr12 59491797 59491899 -61765631 + PB1D9 SINE Alu 15 120 0 6 1038 3053 43 62 0 chr12 59491928 59492301 -61765229 + MTA_Mm LTR MaLR 1 396 0 6 1038 833 41 0 0 chr12 59492345 59492443 -61765087 + L1Md_T LINE L1 5410 5507 -376 6 1038 2216 37 7 0 chr12 59492442 59492712 -61764818 + L1Md_T LINE L1 5678 5949 -633 6 1038 2464 14 0 0 chr12 59492810 59493089 -61764441 + L1Md_F2 LINE L1 5307 5585 -298 6 1038 7964 50 2 3 chr12 59493090 59494087 -61763443 + L1Md_F2 LINE L1 5587 6582 0 6 1038 2385 261 29 11 chr12 59494087 59494707 -61762823 - Lx9 LINE L1 -739 6905 6275 6 1038 461 274 102 43 chr12 59494839 59495026 -61762504 - B3A SINE B2 0 198 1 6 1038 288 0 0 0 chr12 59495356 59495388 -61762142 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1038 477 0 0 0 chr12 59495388 59495440 -61762090 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1038 526 321 25 111 chr12 59495441 59495676 -61761854 - MLT1B LTR MaLR 0 390 176 6 1038 972 251 36 47 chr12 59495915 59496191 -61761339 + RMER15 LTR ERVL 287 559 -16 6 1038 311 287 77 17 chr12 59496225 59496342 -61761188 - MLT1B LTR MaLR -263 127 4 6 1038 587 202 9 0 chr12 59498150 59498264 -61759266 - URR1B DNA MER1_type -28 197 83 6 1038 4831 123 131 18 chr12 59498368 59499313 -61758217 + L1_Mur2 LINE L1 3630 4681 -1196 6 1038 469 275 7 0 chr12 59499788 59499938 -61757592 + L1MB8 LINE L1 5837 5987 -187 6 1038 486 270 9 0 chr12 59500105 59500216 -61757314 - PB1D10 SINE Alu -5 112 1 1 1038 26 64 0 0 chr12 59500855 59500902 -61756628 + AT_rich Low_complexity Low_complexity 1 47 0 2 1038 230 376 23 62 chr12 59501573 59501749 -61755781 + MIRb SINE MIR 36 204 -64 3 1038 1380 237 47 12 chr12 59501952 59502272 -61755258 + Lx5 LINE L1 6720 7050 0 4 1038 195 333 65 28 chr12 59502453 59502561 -61754969 + MIRb SINE MIR 119 230 -38 5 1038 24 53 0 0 chr12 59502592 59502630 -61754900 + AT_rich Low_complexity Low_complexity 1 38 0 6 1038 296 171 57 0 chr12 59502712 59502800 -61754730 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 7 1038 507 298 73 45 chr12 59503637 59503967 -61753563 + L1MD3 LINE L1 7498 7836 -159 8 1038 24 67 0 0 chr12 59504043 59504088 -61753442 + AT_rich Low_complexity Low_complexity 1 45 0 9 1038 329 305 45 86 chr12 59504330 59504793 -61752737 + L1MD3 LINE L1 7206 7649 -233 1 1038 430 289 120 15 chr12 59505126 59505326 -61752204 + L1MD3 LINE L1 7736 7956 -39 1 1038 409 34 34 0 chr12 59505608 59505667 -61751863 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1 1038 22 35 0 0 chr12 59505675 59505704 -61751826 + AT_rich Low_complexity Low_complexity 1 29 0 1 129 1964 99 83 46 chr12 59506366 59506714 -61750816 - RLTR10B2 LTR ERVK 0 365 5 1 1039 276 28 0 0 chr12 59506713 59506749 -61750781 - RLTR10B2 LTR ERVK -256 36 1 1 1039 241 208 146 0 chr12 59507759 59507807 -61749723 - MLT1B LTR MaLR -8 459 405 1 1039 3512 266 58 32 chr12 59507863 59508927 -61748603 + Lx9 LINE L1 6410 7514 -130 1 1039 891 19 0 0 chr12 59508927 59509032 -61748498 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 1039 3512 266 58 32 chr12 59509032 59509135 -61748395 + Lx9 LINE L1 7515 7607 -37 1 1039 658 277 87 43 chr12 59509172 59509402 -61748128 - MLT1B LTR MaLR -138 252 13 1 1039 202 0 29 57 chr12 59510442 59510477 -61747053 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1039 338 343 126 8 chr12 59512515 59512762 -61744768 + L3 LINE CR1 3573 3848 -641 1 1039 576 263 77 77 chr12 59514022 59514216 -61743314 + B3 SINE B2 1 194 -1 1 1039 183 235 0 0 chr12 59516093 59516144 -61741386 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1039 355 279 0 22 chr12 59516152 59516335 -61741195 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1039 1704 241 135 30 chr12 59516627 59517044 -61740486 + RMER15 LTR ERVL 27 493 -82 2 1039 1528 169 171 6 chr12 59517044 59517365 -61740165 + ORR1D1 LTR MaLR 1 374 0 2 1039 1704 241 135 30 chr12 59517365 59517444 -61740086 + RMER15 LTR ERVL 494 575 0 2 1039 317 151 10 51 chr12 59518184 59518282 -61739248 + CT-rich Low_complexity Low_complexity 3 96 0 2 1039 513 47 0 0 chr12 59518803 59518867 -61738663 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1039 7780 75 1 1 chr12 59519078 59520429 -61737101 + L1_Mus1 LINE L1 5217 6566 -1 2 1039 426 39 0 0 chr12 59521664 59521716 -61735814 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1039 235 394 37 22 chr12 59522213 59522348 -61735182 + ORR1E LTR MaLR 3 139 -220 2 1039 452 229 54 18 chr12 59522822 59522933 -61734597 - PB1D9 SINE Alu -5 115 1 2 1039 914 292 163 45 chr12 59524612 59525010 -61732520 + Tigger7 DNA MER2_type 24 468 -2023 3 1039 333 382 18 35 chr12 59525935 59526220 -61731310 - L1ME3 LINE L1 -264 5898 5619 3 1039 313 335 87 41 chr12 59526451 59526669 -61730861 + HAL1b LINE L1 1340 1567 -442 3 1039 901 329 46 18 chr12 59529428 59529713 -61727817 + MTEa LTR MaLR 3 295 -84 3 1039 229 333 48 24 chr12 59529804 59529930 -61727600 + Lx8 LINE L1 7034 7162 -311 3 1039 1390 295 107 45 chr12 59530570 59531297 -61726233 + Tigger10 DNA Tigger 125 896 -947 3 1039 517 209 0 0 chr12 59533877 59533968 -61723562 + PB1D10 SINE Alu 18 108 -9 3 1039 467 323 6 52 chr12 59534483 59534656 -61722874 + RSINE1 SINE B4 1 165 0 3 1039 311 0 26 0 chr12 59535167 59535206 -61722324 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1039 182 286 45 91 chr12 59536481 59536635 -61720895 - L2c LINE L2 -130 3257 3111 3 1039 308 329 127 16 chr12 59537146 59537451 -61720079 - L1ME4a LINE L1 -224 5900 5563 4 1039 1175 68 0 0 chr12 59537694 59537841 -61719689 + B1_Mus1 SINE Alu 2 148 0 4 1039 480 327 85 73 chr12 59539018 59539443 -61718087 - L1MD3 LINE L1 -39 7956 7527 4 1039 1323 271 6 34 chr12 59539757 59540082 -61717448 - MTD LTR MaLR -98 321 6 4 1039 711 215 73 28 chr12 59540197 59540374 -61717156 - Lx4B LINE L1 -6 7052 6868 4 1039 1440 172 4 8 chr12 59540372 59540624 -61716906 + Lx2B LINE L1 6532 6782 -218 4 1039 258 348 78 90 chr12 59541092 59541414 -61716116 - ORR1E LTR MaLR -39 320 3 4 1039 207 0 0 0 chr12 59542053 59542076 -61715454 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1039 390 170 113 0 chr12 59542114 59542220 -61715310 + Lx9 LINE L1 7381 7498 -146 4 1039 375 209 12 42 chr12 59542234 59542437 -61715093 + (TATAA)n Simple_repeat Simple_repeat 1 196 0 4 1039 415 193 61 20 chr12 59542441 59542589 -61714941 + Lx9 LINE L1 7483 7636 -8 4 1039 687 259 37 31 chr12 59542825 59542867 -61714663 - B3A SINE B2 -6 192 154 5 1039 977 44 0 42 chr12 59542867 59543034 -61714496 + (TG)n Simple_repeat Simple_repeat 2 161 0 5 1039 687 259 37 31 chr12 59543034 59543182 -61714348 - B3A SINE B2 -45 153 1 5 1039 347 320 82 57 chr12 59543271 59543586 -61713944 + MER2B DNA MER2_type 1 323 -13 5 1039 203 146 24 0 chr12 59544086 59544127 -61713403 + T-rich Low_complexity Low_complexity 4 45 0 5 1039 1101 150 96 10 chr12 59544301 59544509 -61713021 + URR1A DNA MER1_type 1 226 0 5 1039 377 163 70 0 chr12 59544782 59544868 -61712662 - RMER12 LTR ERVK -479 843 752 5 1039 352 311 20 82 chr12 59546183 59546216 -61711314 + B1F SINE Alu 10 42 -107 5 1039 2679 86 35 54 chr12 59546216 59546645 -61710885 - BGLII LTR ERVK 0 421 1 5 1039 352 311 20 82 chr12 59546645 59546746 -61710784 + B1F SINE Alu 43 138 -11 5 1039 279 0 0 0 chr12 59546746 59546777 -61710753 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1039 352 311 20 82 chr12 59546777 59546788 -61710742 + B1F SINE Alu 139 146 -3 5 1039 317 304 29 0 chr12 59547202 59547304 -61710226 + PB1D10 SINE Alu 2 106 -11 5 1039 27 0 0 0 chr12 59547366 59547393 -61710137 + AT_rich Low_complexity Low_complexity 1 27 0 6 1039 22 80 0 0 chr12 59547567 59547617 -61709913 + AT_rich Low_complexity Low_complexity 1 50 0 6 1039 660 249 92 48 chr12 59548240 59548447 -61709083 - B3 SINE B2 0 216 1 6 1039 217 363 94 24 chr12 59548532 59548659 -61708871 - MIRc SINE MIR -122 146 11 6 1039 194 296 203 22 chr12 59548825 59548963 -61708567 + L2c LINE L2 3184 3346 -41 6 1039 278 258 0 0 chr12 59549225 59549291 -61708239 + ID4 SINE ID 1 66 -17 6 1039 838 168 7 0 chr12 59550507 59550650 -61706880 + B1_Mus1 SINE Alu 5 148 0 6 1039 184 342 116 9 chr12 59550796 59550908 -61706622 + MIR3 SINE MIR 72 195 -13 6 1039 701 246 103 16 chr12 59551066 59551260 -61706270 + B3 SINE B2 2 212 -4 6 1039 21 0 0 0 chr12 59551260 59551281 -61706249 + AT_rich Low_complexity Low_complexity 1 21 0 6 1039 2831 228 45 36 chr12 59551401 59552126 -61705404 - Lx7 LINE L1 0 7696 6965 7 1039 4830 190 194 10 chr12 59552131 59553567 -61703963 + Lx4B LINE L1 2343 4043 -1837 7 1039 1406 136 232 37 chr12 59553560 59553935 -61703595 + Lx4B LINE L1 4460 4907 -970 7 1039 594 255 78 56 chr12 59553949 59554219 -61703311 + RLTR15 LTR ERVK 1 276 -83 7 1039 6764 170 48 11 chr12 59554278 59556294 -61701236 + Lx4B LINE L1 4945 7052 -6 7 1039 953 156 66 6 chr12 59556292 59556473 -61701057 + Lx5 LINE L1 5779 5970 -1080 7 1039 681 345 62 40 chr12 59557238 59557642 -61699888 - LTR52 LTR ERVL -1 420 8 7 1039 1147 323 47 41 chr12 59558740 59558859 -61698671 + Lx8 LINE L1 6597 6709 -764 7 1039 4240 101 126 75 chr12 59558859 59559703 -61697827 - RMER17D LTR ERVK -2 887 1 7 1039 1147 323 47 41 chr12 59559703 59559720 -61697810 + Lx8 LINE L1 6710 6724 -749 7 1039 1751 210 58 2 chr12 59559720 59560117 -61697413 - MTD LTR MaLR 0 419 1 7 1039 1147 323 47 41 chr12 59560117 59560634 -61696896 + Lx8 LINE L1 6725 7254 -219 7 1039 212 392 10 20 chr12 59561080 59561179 -61696351 + ID_B1 SINE B4 23 120 -104 7 1039 269 51 0 25 chr12 59561957 59561997 -61695533 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1039 222 37 0 0 chr12 59562019 59562046 -61695484 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 8 1039 1153 325 90 34 chr12 59562094 59563530 -61694000 + L1_Mur3 LINE L1 4177 5653 -227 8 1039 405 86 0 0 chr12 59563530 59563588 -61693942 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1039 1153 333 68 46 chr12 59563588 59563601 -61693929 + L1_Mur3 LINE L1 5654 5663 -217 8 1039 306 0 0 0 chr12 59563601 59563635 -61693895 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1039 923 73 40 0 chr12 59563640 59563764 -61693766 - B1_Mus1 SINE Alu -18 130 2 8 1039 230 0 33 0 chr12 59563764 59563794 -61693736 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 8 1039 1153 333 68 46 chr12 59563794 59563975 -61693555 + L1_Mur3 LINE L1 5669 5864 -16 8 1039 335 300 203 30 chr12 59564104 59564393 -61693137 - MER99 DNA hAT? -395 436 98 8 1039 1116 298 27 39 chr12 59564655 59565137 -61692393 + Lx9 LINE L1 6880 7355 -289 8 1039 537 16 0 0 chr12 59565196 59565258 -61692272 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1039 607 215 0 11 chr12 59565299 59565478 -61692052 + GA-rich Low_complexity Low_complexity 2 178 0 8 1039 438 322 51 0 chr12 59566156 59566274 -61691256 - RSINE1 SINE B4 -36 129 6 9 1039 228 314 50 17 chr12 59566564 59566684 -61690846 - Lx8 LINE L1 -1567 5906 5783 9 1039 453 188 59 0 chr12 59566686 59566771 -61690759 - RMER20B LTR ERVK 0 627 538 9 1039 1979 161 102 10 chr12 59566775 59567159 -61690371 - RMER20B LTR ERVK -204 423 5 9 1039 225 244 98 0 chr12 59567172 59567254 -61690276 - L1M2 LINE L1 -498 5799 5710 9 1039 374 216 28 56 chr12 59567310 59567418 -61690112 + L1M2 LINE L1 5521 5625 -675 9 1039 1051 292 94 4 chr12 59567449 59567992 -61689538 - Lx8 LINE L1 -361 5519 4928 9 1039 297 0 0 0 chr12 59568242 59568275 -61689255 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1039 900 220 122 0 chr12 59568506 59568720 -61688810 - MTE2b LTR MaLR -66 313 74 9 1039 1642 230 31 18 chr12 59568722 59569182 -61688348 - Lx9 LINE L1 -1734 5910 5409 9 1039 8576 138 20 4 chr12 59569193 59570861 -61686669 - Lx4A LINE L1 -3 7055 5351 9 1039 328 145 14 56 chr12 59570857 59570940 -61686590 - Lx9 LINE L1 -441 5439 5334 9 1039 304 356 31 18 chr12 59571640 59571803 -61685727 + MER58A DNA MER1_type 43 207 -17 9 1039 189 107 0 0 chr12 59572471 59572499 -61685031 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1 1039 378 61 0 0 chr12 59573701 59573750 -61683780 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1039 269 29 83 28 chr12 59575122 59575194 -61682336 + (CAAAA)n Simple_repeat Simple_repeat 2 77 0 1 1039 366 341 41 32 chr12 59575255 59575476 -61682054 + MT2A LTR ERVL 16 238 -295 1 1039 584 301 79 35 chr12 59575544 59575885 -61681645 + MT2A LTR ERVL 178 533 0 1 1039 180 364 78 19 chr12 59576473 59576627 -61680903 + L2 LINE L2 2721 2883 -536 1 1039 38 0 0 0 chr12 59576712 59576750 -61680780 + AT_rich Low_complexity Low_complexity 1 38 0 1 1039 189 233 93 72 chr12 59577847 59577944 -61679586 + MIR SINE MIR 86 191 -77 1 1039 411 330 71 31 chr12 59578191 59578416 -61679114 + Lx8 LINE L1 6966 7199 -274 1 1039 1161 268 21 17 chr12 59579071 59579360 -61678170 + ORR1D2 LTR MaLR 1 290 -80 1 1039 5128 68 40 11 chr12 59579364 59579998 -61677532 + L1_Mus3 LINE L1 5915 6571 -67 1 1039 3045 67 10 5 chr12 59579998 59580390 -61677140 + MTA_Mm LTR MaLR 3 396 0 1 1039 5128 68 40 11 chr12 59580390 59580459 -61677071 + L1_Mus3 LINE L1 6572 6638 0 1 1039 414 265 160 27 chr12 59581916 59582141 -61675389 - Lx8 LINE L1 -5 7468 7214 1 1039 540 126 0 0 chr12 59582141 59582228 -61675302 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1039 1473 304 163 19 chr12 59582228 59583080 -61674450 - Lx8 LINE L1 -247 7226 6252 1 1039 1025 169 108 0 chr12 59583255 59583450 -61674080 - URR1B DNA MER1_type -8 217 2 1 1039 195 162 0 0 chr12 59583671 59583708 -61673822 + A-rich Low_complexity Low_complexity 1 37 0 1 1039 261 119 0 0 chr12 59583751 59583793 -61673737 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1039 21 0 0 0 chr12 59584579 59584600 -61672930 + AT_rich Low_complexity Low_complexity 1 21 0 1 1039 4470 111 38 7 chr12 59585940 59586621 -61670909 - Lx2 LINE L1 -2 6995 6294 1 1039 2291 56 19 19 chr12 59587163 59587473 -61670057 - L1Md_F2 LINE L1 -2 6580 6271 1 1039 282 302 69 8 chr12 59587671 59587801 -61669729 - Charlie20a DNA Charlie -250 557 420 1 1039 242 253 93 0 chr12 59587813 59587882 -61669648 + ID4 SINE ID 3 85 -67 1 1039 381 22 0 0 chr12 59587883 59587929 -61669601 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1039 225 0 0 0 chr12 59588280 59588305 -61669225 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1039 36503 39 0 3 chr12 59588338 59594602 -61662928 - L1Md_T LINE L1 0 6585 242 1 1039 39001 15 1 0 chr12 59594614 59600857 -61656673 - L1Md_A LINE L1 0 6582 375 1 1039 462 246 133 65 chr12 59600936 59601383 -61656147 - L1M2 LINE L1 -3630 3212 2727 1 1039 232 250 26 77 chr12 59601931 59602048 -61655482 - L1MC3 LINE L1 -17 7768 7658 1 1039 339 188 136 65 chr12 59602168 59602322 -61655208 - L1MC2 LINE L1 -358 5986 5822 1 1039 3572 222 22 27 chr12 59602386 59602710 -61654820 - Lx6 LINE L1 -11 7449 7119 1 1039 342 0 0 0 chr12 59602710 59602748 -61654782 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1039 3572 222 22 27 chr12 59602748 59603251 -61654279 - Lx6 LINE L1 -342 7118 6627 1 1039 264 274 200 6 chr12 59603279 59603444 -61654086 - L1MC2 LINE L1 -546 5798 5602 1 1039 348 333 29 0 chr12 59603457 59603559 -61653971 + B1F SINE Alu 10 114 -35 1 1039 509 256 162 14 chr12 59603587 59604014 -61653516 - L1MC2 LINE L1 -2390 5605 5107 1 1039 692 250 57 6 chr12 59604050 59604207 -61653323 - B3A SINE B2 -29 169 5 1 1039 1329 55 4 11 chr12 59604231 59604505 -61653025 + (GAAA)n Simple_repeat Simple_repeat 1 271 0 1 1039 1756 278 42 38 chr12 59604505 59605323 -61652207 + L1_Mur3 LINE L1 3661 4481 -1399 1 1039 729 228 36 16 chr12 59605906 59606098 -61651432 + B3A SINE B2 3 198 0 1 1039 3618 81 23 0 chr12 59606225 59606745 -61650785 - L1_Mm LINE L1 -1064 4819 4288 1 1039 384 258 53 94 chr12 59607622 59607793 -61649737 + MIRb SINE MIR 105 268 0 1 1039 180 0 0 0 chr12 59608064 59608084 -61649446 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1 1039 1183 82 0 0 chr12 59608803 59608950 -61648580 + B1_Mus2 SINE Alu 1 147 0 1 1039 1295 216 210 111 chr12 59609740 59610225 -61647305 - MT2B LTR ERVL 0 601 1 1 1039 315 322 130 0 chr12 59610308 59610423 -61647107 + B4A SINE B4 41 170 -122 1 1039 467 248 7 79 chr12 59610345 59610485 -61647045 + B1_Mus1 SINE Alu 7 136 -12 1 1039 253 184 0 0 chr12 59610489 59610538 -61646992 + B1_Mur4 SINE Alu 102 150 0 1 1039 634 325 36 0 chr12 59611057 59611309 -61646221 - Lx8 LINE L1 -357 7116 6856 1 1039 267 31 0 0 chr12 59611561 59611593 -61645937 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1039 432 0 0 0 chr12 59611594 59611642 -61645888 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1039 470 181 13 13 chr12 59612695 59612846 -61644684 + (TG)n Simple_repeat Simple_repeat 1 151 0 1 1039 232 175 0 31 chr12 59613030 59613095 -61644435 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1039 212 250 26 13 chr12 59613136 59613213 -61644317 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1039 396 0 0 0 chr12 59613232 59613276 -61644254 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1039 213 39 0 0 chr12 59614945 59614971 -61642559 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1039 232 335 98 90 chr12 59614990 59615249 -61642281 + LTR33A_ LTR ERVL 33 294 -226 1 1039 679 92 18 0 chr12 59615279 59615388 -61642142 + (TC)n Simple_repeat Simple_repeat 2 112 0 1 1039 279 291 80 0 chr12 59615507 59615613 -61641917 - PB1D10 SINE Alu 0 120 3 1 1039 40 49 0 0 chr12 59616346 59616407 -61641123 + AT_rich Low_complexity Low_complexity 1 61 0 1 1039 181 114 74 28 chr12 59616440 59616548 -61640982 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 1039 972 287 70 39 chr12 59617232 59617544 -61639986 - MTE2b LTR MaLR 0 379 58 1 1039 262 365 113 42 chr12 59618579 59619011 -61638519 - MLT1C LTR MaLR -2 465 3 1 1039 184 100 0 48 chr12 59619084 59619126 -61638404 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1039 333 0 0 0 chr12 59619309 59619346 -61638184 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 1039 420 302 0 40 chr12 59619401 59619525 -61638005 - PB1D7 SINE Alu -1 119 1 1 1039 25 0 0 0 chr12 59619525 59619550 -61637980 + AT_rich Low_complexity Low_complexity 1 25 0 1 1039 5573 67 0 0 chr12 59620188 59620889 -61636641 + L1_Mus1 LINE L1 5864 6564 -3 1 1039 21 0 0 0 chr12 59621781 59621802 -61635728 + AT_rich Low_complexity Low_complexity 1 21 0 1 1039 3542 78 0 0 chr12 59621903 59622363 -61635167 + L1_Mus1 LINE L1 6106 6565 -2 1 1039 1468 283 50 35 chr12 59622890 59623023 -61634507 + L1MA5 LINE L1 5551 5680 -620 1 1039 280 329 87 7 chr12 59623023 59623161 -61634369 + B1F1 SINE Alu 1 149 0 1 1039 1468 283 50 35 chr12 59623161 59623766 -61633764 + L1MA5 LINE L1 5681 6300 0 1 1039 386 310 61 75 chr12 59624573 59624786 -61632744 + LTR16A1 LTR ERVL 10 219 -237 1 1039 4243 118 27 3 chr12 59625113 59625743 -61631787 + Lx3B LINE L1 6324 6968 -5 1 1039 399 209 0 0 chr12 59625814 59625929 -61631601 + CT-rich Low_complexity Low_complexity 2 116 0 1 1039 766 258 13 66 chr12 59626146 59626374 -61631156 + B3 SINE B2 1 216 0 1 1039 207 0 0 0 chr12 59628270 59628293 -61629237 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1039 5362 93 22 7 chr12 59628310 59629068 -61628462 - L1_Mus3 LINE L1 -7 6631 5862 1 1039 6829 87 2 4 chr12 59629092 59630542 -61626988 - L1_Mus2 LINE L1 -67 6499 5051 1 1039 233 299 77 77 chr12 59630634 59630790 -61626740 + L2a LINE L2 3263 3418 -8 1 1039 186 139 22 65 chr12 59631226 59631272 -61626258 + L3 LINE CR1 2119 2162 -2327 1 1039 898 324 67 15 chr12 59631626 59631967 -61625563 + ORR1E LTR MaLR 1 359 0 1 1039 746 285 107 62 chr12 59631984 59632664 -61624866 + L1MCb LINE L1 736 1546 -5205 1 1039 482 312 22 45 chr12 59632664 59632959 -61624571 + MLT1A LTR MaLR 87 371 -19 1 1039 189 310 230 0 chr12 59633269 59633369 -61624161 - L2 LINE L2 -1010 2409 2287 1 1039 321 26 0 0 chr12 59633648 59633686 -61623844 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1039 632 325 98 17 chr12 59633829 59634126 -61623404 + MTD LTR MaLR 99 419 0 1 1039 927 173 30 0 chr12 59634676 59634844 -61622686 + URR1A DNA MER1_type 54 226 0 1 1039 246 262 24 24 chr12 59635525 59635607 -61621923 + MLT1A LTR MaLR 307 388 -2 1 1039 2431 179 41 53 chr12 59636060 59636128 -61621402 + RLTR28 LTR ERVL 1 88 -436 1 1039 234 0 0 0 chr12 59636128 59636154 -61621376 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1039 2431 179 41 53 chr12 59636154 59636598 -61620932 + RLTR28 LTR ERVL 89 506 -18 1 1039 619 259 90 37 chr12 59636868 59637167 -61620363 - MTE2a LTR MaLR 0 379 8 1 1040 333 0 0 0 chr12 59637797 59637834 -61619696 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1040 6045 75 19 34 chr12 59638058 59638937 -61618593 - Lx3_Mus LINE L1 -8 7001 6136 1 1040 1710 162 3 34 chr12 59640534 59640827 -61616703 + RMER4A LTR ERVK 1 284 -182 1 1040 3073 139 37 37 chr12 59640827 59641388 -61616142 - RLTR31_Mm LTR ERVK 0 561 1 1 1040 258 106 21 0 chr12 59641388 59641435 -61616095 + RMER4A LTR ERVK 419 466 0 1 1040 309 267 133 0 chr12 59641583 59641688 -61615842 + PB1D9 SINE Alu 1 119 -1 1 1040 21 57 0 0 chr12 59641768 59641803 -61615727 + AT_rich Low_complexity Low_complexity 1 35 0 1 1040 203 382 29 19 chr12 59641804 59641908 -61615622 - MIRb SINE MIR -130 138 34 1 1040 623 13 13 0 chr12 59642082 59642158 -61615372 + (TTC)n Simple_repeat Simple_repeat 3 79 0 1 1040 218 279 28 7 chr12 59642159 59642300 -61615230 + C-rich Low_complexity Low_complexity 2 145 0 1 1040 1123 111 0 11 chr12 59642304 59642674 -61614856 + (TTC)n Simple_repeat Simple_repeat 1 365 0 1 1040 248 180 0 16 chr12 59642687 59642729 -61614801 + polypyrimidine Low_complexity Low_complexity 22 62 0 1 1040 745 222 111 5 chr12 59642729 59642919 -61614611 - B3 SINE B2 -5 211 2 1 1040 248 180 0 16 chr12 59642919 59642938 -61614592 + polypyrimidine Low_complexity Low_complexity 3 21 0 1 1040 845 138 7 0 chr12 59642979 59643124 -61614406 + (GA)n Simple_repeat Simple_repeat 1 146 0 1 1040 220 388 10 0 chr12 59645067 59645170 -61612360 + L3 LINE CR1 3965 4068 -421 1 1040 447 321 137 90 chr12 59646780 59647181 -61610349 + MLT1E1A LTR MaLR 172 617 -63 2 1040 421 139 0 0 chr12 59647195 59647274 -61610256 - L1Md_F2 LINE L1 -2 6580 6502 2 1040 2910 188 2 23 chr12 59647289 59647845 -61609685 - Lx4A LINE L1 -10 7048 6505 2 1040 243 171 0 0 chr12 59647845 59647886 -61609644 + Lx5 LINE L1 6460 6500 -550 2 1040 1226 272 96 31 chr12 59648078 59648559 -61608971 - Lx9 LINE L1 -174 7470 6959 2 1040 1778 282 43 14 chr12 59648575 59648695 -61608835 + Lx9 LINE L1 6358 6487 -1157 2 1040 1192 167 37 9 chr12 59648695 59648913 -61608617 + URR1B DNA MER1_type 2 225 0 2 1040 1778 282 43 14 chr12 59648913 59649368 -61608162 + Lx9 LINE L1 6488 6950 -694 2 1040 1361 276 85 59 chr12 59649595 59650289 -61607241 + L1MA9 LINE L1 5601 6312 0 2 1040 818 292 48 42 chr12 59650439 59650728 -61606802 - B4A SINE B4 0 292 2 2 1040 1056 226 173 19 chr12 59651092 59651416 -61606114 + ORR1D1 LTR MaLR 1 374 0 2 1040 412 344 229 8 chr12 59651433 59651709 -61605821 + LTR16E1 LTR ERVL 1 295 -243 2 1040 4373 87 54 67 chr12 59653474 59654235 -61603295 + RMER17A LTR ERVK 1 751 0 2 1040 24 0 0 0 chr12 59654371 59654395 -61603135 + AT_rich Low_complexity Low_complexity 1 24 0 2 1040 209 163 20 0 chr12 59654740 59654789 -61602741 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1040 613 182 23 8 chr12 59655052 59655185 -61602345 + L1_Rod LINE L1 3249 3383 -2464 2 1040 458 232 13 60 chr12 59655227 59655378 -61602152 - L1M1 LINE L1 -758 5545 5402 2 1040 522 297 167 33 chr12 59657271 59657546 -61599984 + LTR50 LTR ERVL 220 531 -264 2 1040 904 148 196 0 chr12 59657581 59657770 -61599760 - URR1A DNA MER1_type 0 226 1 2 1040 229 315 35 69 chr12 59657804 59657920 -61599610 - MER5A1 DNA MER1_type -6 160 49 2 1040 228 292 14 14 chr12 59658690 59658763 -61598767 - B3 SINE B2 -134 82 10 2 1040 450 0 0 0 chr12 59658772 59658822 -61598708 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1040 328 311 56 19 chr12 59658927 59659035 -61598495 + MLT1D LTR MaLR 288 399 -106 2 1040 290 306 122 68 chr12 59659094 59659315 -61598215 + ORR1E LTR MaLR 20 252 -107 2 1040 276 326 0 0 chr12 59659728 59659817 -61597713 - B1F SINE Alu -51 98 10 2 1040 1116 262 60 31 chr12 59659817 59660167 -61597363 + RMER5 LTR ERV1 175 534 0 2 1040 420 237 108 17 chr12 59660274 59660394 -61597136 - RMER5 LTR ERV1 -373 161 31 2 1040 21 0 0 0 chr12 59660770 59660791 -61596739 + AT_rich Low_complexity Low_complexity 1 21 0 2 1040 30 0 0 0 chr12 59662169 59662199 -61595331 + AT_rich Low_complexity Low_complexity 1 30 0 2 1040 1624 98 8 4 chr12 59662508 59662754 -61594776 - L1_Mus4 LINE L1 -5 6631 6385 2 1040 888 83 6 0 chr12 59662754 59662894 -61594636 + L1_Mus4 LINE L1 5667 5813 -1237 2 1040 205 325 81 8 chr12 59663045 59663169 -61594361 + L2 LINE L2 2857 2989 -430 2 1040 452 137 9 29 chr12 59663452 59663557 -61593973 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 1040 835 287 104 2 chr12 59664744 59665187 -61592343 + L1MB8 LINE L1 4611 5096 -1050 2 1040 548 214 60 11 chr12 59666015 59666199 -61591331 + L1MB8 LINE L1 5798 5990 -188 2 1040 308 262 100 0 chr12 59666245 59666304 -61591226 - 5S rRNA rRNA -31 90 32 2 1040 441 0 0 0 chr12 59666304 59666353 -61591177 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1040 308 262 100 0 chr12 59666353 59666373 -61591157 - 5S rRNA rRNA -90 31 4 2 1040 318 308 29 36 chr12 59666373 59666511 -61591019 + L1MB8 LINE L1 6031 6167 -11 2 1040 231 231 0 19 chr12 59666513 59666566 -61590964 + GA-rich Low_complexity Low_complexity 1 52 0 2 1040 1129 291 74 55 chr12 59667732 59668521 -61589009 + L1ME1 LINE L1 5306 6102 -77 2 1040 231 206 127 0 chr12 59668575 59668638 -61588892 - ID4_ SINE ID -10 73 3 2 1040 449 277 80 30 chr12 59669992 59670337 -61587193 + MER74C LTR ERVL 4 480 -78 2 1040 360 0 0 0 chr12 59670873 59670913 -61586617 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1040 196 233 48 48 chr12 59671543 59671606 -61585924 - L2 LINE L2 -867 2552 2490 2 1040 471 276 35 177 chr12 59672832 59673114 -61584416 + MLT1A LTR MaLR 94 335 -39 2 1040 1058 163 91 15 chr12 59673116 59673315 -61584215 + URR1A DNA MER1_type 3 216 -10 2 1040 23 0 0 0 chr12 59673787 59673810 -61583720 + AT_rich Low_complexity Low_complexity 1 23 0 2 1040 451 279 24 95 chr12 59673920 59674130 -61583400 - RMER15 LTR ERVL -13 562 368 2 1040 2240 189 18 13 chr12 59674573 59674979 -61582551 + MTC LTR MaLR 1 396 -25 2 1040 23 0 0 0 chr12 59675324 59675347 -61582183 + AT_rich Low_complexity Low_complexity 1 23 0 2 1040 863 284 57 42 chr12 59675847 59676112 -61581418 + B4A SINE B4 24 292 0 2 1040 384 22 0 0 chr12 59676177 59676222 -61581308 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1040 258 170 38 0 chr12 59676554 59676607 -61580923 + Lx9 LINE L1 7420 7474 -170 2 1040 426 20 0 0 chr12 59676612 59676663 -61580867 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1040 624 48 0 0 chr12 59676663 59676746 -61580784 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 1040 270 151 95 21 chr12 59676746 59676841 -61580689 + Lx9 LINE L1 7543 7644 0 2 1040 426 309 137 73 chr12 59677194 59677809 -61579721 + L1MEg LINE L1 511 1164 -4920 2 1040 4440 112 51 10 chr12 59678453 59679144 -61578386 + Lx LINE L1 5930 6648 -6 2 1040 539 29 14 0 chr12 59680094 59680163 -61577367 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1040 194 109 53 35 chr12 59680164 59680221 -61577309 + GA-rich Low_complexity Low_complexity 1 58 0 2 1040 974 64 0 0 chr12 59680347 59680472 -61577058 - L1Md_F3 LINE L1 -350 6234 6110 2 1040 2790 49 0 17 chr12 59680472 59680826 -61576704 + L1Md_F3 LINE L1 6222 6569 -15 2 1040 30 45 0 0 chr12 59680826 59680870 -61576660 + AT_rich Low_complexity Low_complexity 1 44 0 2 1040 21 0 0 0 chr12 59680940 59680961 -61576569 + AT_rich Low_complexity Low_complexity 1 21 0 2 1040 876 282 32 14 chr12 59681274 59681551 -61575979 + B4A SINE B4 3 284 -8 2 1040 1811 271 111 54 chr12 59681617 59682620 -61574910 + L1MA9 LINE L1 4019 5108 -1035 2 1040 224 30 30 0 chr12 59682620 59682653 -61574877 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 2 1040 1811 271 111 54 chr12 59682653 59682930 -61574600 + L1MA9 LINE L1 5109 5372 -771 2 1040 441 0 0 0 chr12 59683082 59683131 -61574399 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1040 1058 284 88 25 chr12 59683146 59683881 -61573649 + L1MA9 LINE L1 5460 6268 -23 2 1040 28 29 0 0 chr12 59683954 59683989 -61573541 + AT_rich Low_complexity Low_complexity 1 35 0 2 1040 24 0 0 0 chr12 59684093 59684117 -61573413 + AT_rich Low_complexity Low_complexity 1 24 0 2 1040 542 248 14 50 chr12 59684492 59684632 -61572898 + RSINE1 SINE B4 3 137 -28 2 1040 204 259 0 33 chr12 59686615 59686675 -61570855 + L3 LINE CR1 4408 4465 -24 2 1040 309 272 0 0 chr12 59686974 59687066 -61570464 + L1MA4A LINE L1 6060 6151 -152 2 1040 21 36 0 0 chr12 59687088 59687116 -61570414 + AT_rich Low_complexity Low_complexity 1 28 0 2 1040 1178 196 15 100 chr12 59687116 59687233 -61570297 - Lx4B LINE L1 -5 7053 6948 2 1040 681 123 0 0 chr12 59687233 59687339 -61570191 + (CA)n Simple_repeat Simple_repeat 2 107 0 2 1040 1178 196 15 100 chr12 59687339 59687561 -61569969 - Lx4B LINE L1 -111 6947 6743 2 1040 1358 249 42 8 chr12 59687651 59688007 -61569523 + ORR1D2 LTR MaLR 3 370 0 2 1040 758 94 8 0 chr12 59688096 59688213 -61569317 + (GA)n Simple_repeat Simple_repeat 1 118 0 2 1040 1593 267 75 26 chr12 59688491 59689078 -61568452 + Zaphod2 DNA Tip100 111 726 -2798 2 1040 335 288 29 7 chr12 59689060 59689200 -61568330 + Zaphod2 DNA Tip100 2469 2611 -913 2 1040 412 288 106 0 chr12 59689199 59689331 -61568199 + B3A SINE B2 31 176 -22 2 1040 673 335 88 28 chr12 59689502 59689751 -61567779 + B4A SINE B4 7 270 -22 2 1040 255 31 0 0 chr12 59689803 59689835 -61567695 + (CCA)n Simple_repeat Simple_repeat 1 32 0 2 1040 356 241 35 21 chr12 59690329 59690473 -61567057 + L1M3 LINE L1 5170 5315 -825 2 1040 639 261 51 22 chr12 59690496 59690770 -61566760 + L1M3 LINE L1 5514 5795 -502 2 1040 617 365 21 16 chr12 59690771 59691013 -61566517 + MLT2B4 LTR ERVL 99 341 -215 2 1040 24 0 0 0 chr12 59691822 59691846 -61565684 + AT_rich Low_complexity Low_complexity 1 24 0 2 1040 186 133 0 0 chr12 59693202 59693232 -61564298 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2 1040 653 287 100 11 chr12 59693243 59693602 -61563928 - L1MA4 LINE L1 -365 5935 5545 2 1040 440 264 27 0 chr12 59693612 59693722 -61563808 + MLT1A LTR MaLR 262 374 0 2 1040 28 29 0 0 chr12 59693765 59693800 -61563730 + AT_rich Low_complexity Low_complexity 1 35 0 2 1040 7471 50 17 0 chr12 59693912 59694931 -61562599 + L1_Mus2 LINE L1 5532 6565 -1 2 1040 467 308 44 66 chr12 59696029 59696123 -61561407 - B4A SINE B4 -10 282 194 2 1040 7376 12 4 0 chr12 59696123 59696942 -61560588 + RLTR13B2 LTR ERVK 1 822 0 2 1040 467 308 44 66 chr12 59696942 59697028 -61560502 - B4A SINE B4 -99 193 106 2 1040 198 103 0 0 chr12 59697087 59697116 -61560414 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2 1040 218 355 132 5 chr12 59698315 59698519 -61559011 + L2a LINE L2 1036 1265 -2154 2 1040 452 287 175 31 chr12 59698560 59698920 -61558610 + L2a LINE L2 1381 1792 -1627 2 1040 432 0 0 0 chr12 59698987 59699035 -61558495 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1040 525 326 128 16 chr12 59699056 59699435 -61558095 + L2a LINE L2 2734 3153 -273 2 1040 619 339 102 15 chr12 59699437 59699769 -61557761 + MLT1A0 LTR MaLR 1 361 -4 2 1040 279 188 0 0 chr12 59699899 59699947 -61557583 - MER53 DNA hAT 0 193 146 2 1040 22 35 0 0 chr12 59700100 59700129 -61557401 + AT_rich Low_complexity Low_complexity 1 29 0 2 1040 583 342 118 23 chr12 59700613 59701224 -61556306 - Lx8 LINE L1 -3 7470 6802 2 1040 431 286 28 28 chr12 59702601 59702709 -61554821 + MTEa LTR MaLR 58 165 -214 2 1040 35118 29 2 7 chr12 59702722 59707875 -61549655 + L1Md_T LINE L1 469 5586 -297 2 1040 8406 33 0 7 chr12 59707875 59708369 -61549161 + L1Md_T LINE L1 5587 6080 -502 2 1040 2585 113 70 37 chr12 59708369 59708829 -61548701 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1040 8406 33 0 7 chr12 59708829 59709337 -61548193 + L1Md_T LINE L1 6081 6582 0 2 1040 505 142 0 17 chr12 59709393 59709508 -61548022 + (TA)n Simple_repeat Simple_repeat 1 113 0 2 1040 423 103 0 0 chr12 59709508 59709566 -61547964 + MTEa LTR MaLR 269 326 0 2 1040 512 306 6 12 chr12 59710150 59710312 -61547218 + RSINE1 SINE B4 1 161 -4 2 1040 192 97 0 0 chr12 59711680 59711711 -61545819 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1040 309 200 57 0 chr12 59713249 59713319 -61544211 - MADE2 DNA Mariner -6 74 1 3 1040 353 247 34 34 chr12 59713344 59713432 -61544098 - MIRm SINE MIR -150 126 39 3 1040 1035 179 66 10 chr12 59713759 59713957 -61543573 - ORR1C2 LTR MaLR -4 380 172 3 1040 369 0 0 0 chr12 59713970 59714011 -61543519 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1040 723 115 0 0 chr12 59714011 59714141 -61543389 + (GA)n Simple_repeat Simple_repeat 1 130 0 3 1040 506 227 77 118 chr12 59714143 59714338 -61543192 - ORR1C2 LTR MaLR -187 187 1 3 1040 340 305 181 7 chr12 59714728 59714883 -61542647 - MER5A DNA MER1_type -3 186 5 3 1040 655 248 102 15 chr12 59715793 59715990 -61541540 + B3 SINE B2 1 214 -2 3 1040 1139 48 0 0 chr12 59717163 59717310 -61540220 - L1_Mm LINE L1 -956 4927 4781 3 1040 3980 30 0 2 chr12 59717310 59717782 -61539748 + L1Md_F3 LINE L1 6112 6582 -2 3 1040 250 305 49 0 chr12 59717872 59717954 -61539576 - MLT1C LTR MaLR -9 458 373 3 1040 733 351 37 25 chr12 59720039 59720366 -61537164 + MLT1A0 LTR MaLR 21 351 -14 3 1040 305 333 82 16 chr12 59720527 59720649 -61536881 - L4 LINE RTE -879 1150 1021 3 1040 192 217 0 0 chr12 59721279 59721325 -61536205 + GA-rich Low_complexity Low_complexity 3 48 0 3 1040 683 257 119 37 chr12 59722179 59722583 -61534947 - Lx7 LINE L1 -1499 6197 5761 3 1040 2761 201 12 108 chr12 59722583 59723253 -61534277 - RMER19C LTR ERVK 0 611 6 3 1040 1016 254 23 4 chr12 59723256 59723536 -61533994 - Lx7 LINE L1 -126 5754 5487 3 1040 399 171 39 55 chr12 59723599 59723741 -61533789 - L1_Rod LINE L1 -837 5306 5128 3 1040 232 295 31 10 chr12 59723777 59723873 -61533657 - L1_Rod LINE L1 -874 4973 4876 3 1040 360 64 0 0 chr12 59724097 59724144 -61533386 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1040 1560 273 62 8 chr12 59724171 59724655 -61532875 + Lx8 LINE L1 6198 6707 -766 3 1040 1334 307 78 19 chr12 59724673 59725304 -61532226 + Lx8 LINE L1 6806 7473 0 3 1040 1551 168 132 17 chr12 59725771 59726108 -61531422 + ORR1A1 LTR MaLR 8 347 -12 3 1040 499 209 34 17 chr12 59726521 59726638 -61530892 - RMER20B LTR ERVK -508 119 1 3 1040 1011 258 117 24 chr12 59726638 59726972 -61530558 - ORR1D2 LTR MaLR -3 367 3 3 1040 841 186 159 5 chr12 59727561 59727756 -61529774 + URR1A DNA MER1_type 1 225 -1 3 1040 607 307 26 35 chr12 59728988 59729214 -61528316 - MLT1A1 LTR MaLR -13 395 172 3 1040 21 0 0 0 chr12 59729272 59729293 -61528237 + AT_rich Low_complexity Low_complexity 1 21 0 3 1040 756 301 39 0 chr12 59730362 59730565 -61526965 - B3 SINE B2 -4 212 2 3 1040 386 312 50 13 chr12 59731385 59731544 -61525986 + MER5A1 DNA MER1_type 2 166 0 3 1040 427 330 77 74 chr12 59732245 59732543 -61524987 + MLT1E3 LTR MaLR 323 621 -3 3 1040 682 263 26 63 chr12 59732753 59732944 -61524586 + B3A SINE B2 15 198 0 3 1040 1127 283 10 33 chr12 59733054 59733361 -61524169 - MTD LTR MaLR -72 347 48 3 1040 313 402 8 0 chr12 59735058 59735175 -61522355 + RSINE1 SINE B4 44 161 -4 3 1040 620 26 13 0 chr12 59735178 59735256 -61522274 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 1040 427 357 0 9 chr12 59735349 59735462 -61522068 + L2 LINE L2 1221 1332 -2087 3 1040 262 299 205 43 chr12 59736028 59736213 -61521317 - MLT1I LTR MaLR -6 405 191 3 1040 217 355 69 27 chr12 59736373 59736561 -61520969 + L2 LINE L2 2335 2530 -889 3 1040 733 221 7 7 chr12 59737654 59737795 -61519735 + B1_Mur1 SINE Alu 7 147 -2 3 1040 1134 65 0 0 chr12 59737800 59737938 -61519592 + B1_Mm SINE Alu 1 138 -9 3 1040 207 0 0 0 chr12 59737938 59737961 -61519569 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 1040 369 145 0 0 chr12 59739647 59739709 -61517821 + (CATA)n Simple_repeat Simple_repeat 3 64 0 3 1040 350 252 37 18 chr12 59740538 59740647 -61516883 + (CAGAGA)n Simple_repeat Simple_repeat 1 111 0 3 1040 688 221 167 34 chr12 59740656 59740890 -61516640 - RMER4B LTR ERVK -320 265 1 3 1040 6994 226 91 91 chr12 59740903 59743927 -61513603 + Lx8 LINE L1 2145 5107 -773 3 1040 837 47 0 0 chr12 59743927 59744033 -61513497 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 3 1040 6994 226 91 91 chr12 59744033 59744704 -61512826 + Lx8 LINE L1 5108 5839 -41 3 1040 1591 255 21 9 chr12 59744702 59745168 -61512362 + Lx7 LINE L1 6804 7275 -421 3 1040 306 0 0 0 chr12 59745285 59745319 -61512211 + (GTTTG)n Simple_repeat Simple_repeat 3 36 0 3 1040 2595 269 55 30 chr12 59746211 59746989 -61510541 + Lx8 LINE L1 6103 6900 -573 3 1040 857 229 117 23 chr12 59747003 59747267 -61510263 + Lx8 LINE L1 7185 7473 0 3 1040 248 319 24 122 chr12 59748303 59748549 -61508981 + L1MC4 LINE L1 6571 6792 -1250 3 1040 429 309 71 14 chr12 59748829 59749039 -61508491 + L1MC4 LINE L1 7185 7406 -636 3 1040 279 0 0 0 chr12 59749176 59749207 -61508323 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1040 303 88 0 0 chr12 59750018 59750075 -61507455 + Lx LINE L1 6597 6653 -1 3 1040 23 0 0 0 chr12 59750075 59750098 -61507432 + AT_rich Low_complexity Low_complexity 1 23 0 3 1040 1025 169 46 23 chr12 59750229 59750447 -61507083 - URR1A DNA MER1_type -2 224 2 3 1040 778 349 61 40 chr12 59751447 59751826 -61505704 - MER54A LTR ERVL -437 464 78 3 1040 845 272 57 65 chr12 59751906 59752464 -61505066 - L1MA9 LINE L1 -204 6108 5555 3 1040 243 306 14 0 chr12 59753310 59753382 -61504148 + MLT1A0 LTR MaLR 3 75 -299 3 1040 457 266 96 92 chr12 59753389 59753620 -61503910 + B4A SINE B4 43 277 -15 3 1040 805 91 22 33 chr12 59753620 59753801 -61503729 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1040 457 266 96 92 chr12 59753801 59753818 -61503712 + B4A SINE B4 278 292 0 3 1040 471 162 35 7 chr12 59753834 59753977 -61503553 + (CA)n Simple_repeat Simple_repeat 1 147 0 3 1040 519 283 43 14 chr12 59754063 59754203 -61503327 + MLT1A0 LTR MaLR 217 360 -5 3 1040 815 194 200 0 chr12 59756092 59756272 -61501258 + B3 SINE B2 1 216 0 3 1040 566 288 55 15 chr12 59756898 59757099 -61500431 - MLT1B LTR MaLR -178 212 4 3 1040 23 0 0 0 chr12 59757429 59757452 -61500078 + AT_rich Low_complexity Low_complexity 1 23 0 3 1040 185 154 0 25 chr12 59757514 59757554 -61499976 + C-rich Low_complexity Low_complexity 6 44 0 3 1040 399 21 0 0 chr12 59757558 59757606 -61499924 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1040 364 150 0 0 chr12 59757668 59757728 -61499802 + MTEb LTR MaLR 318 377 -2 3 1040 369 136 0 0 chr12 59757827 59757893 -61499637 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1040 485 32 16 0 chr12 59758442 59758505 -61499025 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1040 436 252 39 0 chr12 59758525 59758628 -61498902 - B4A SINE B4 -4 288 182 3 1040 285 266 18 94 chr12 59759086 59759256 -61498274 - L1MB7 LINE L1 -15 6169 6013 3 1040 266 246 45 0 chr12 59759314 59759424 -61498106 + (TA)n Simple_repeat Simple_repeat 1 115 0 3 1040 1238 261 89 6 chr12 59759479 59759806 -61497724 + MTE2b LTR MaLR 5 358 -21 3 1040 247 181 28 0 chr12 59759906 59759978 -61497552 - Lx9 LINE L1 -2 7642 7569 3 1040 3301 38 8 2 chr12 59759982 59760376 -61497154 + MTA_Mm LTR MaLR 1 396 0 3 1040 2117 100 0 0 chr12 59760376 59760677 -61496853 + MTA_Mm-int LTR MaLR 1 301 -797 3 1040 36129 14 2 11 chr12 59760678 59766059 -61491471 + L1Md_A LINE L1 260 5586 -297 3 1040 8839 14 0 0 chr12 59766059 59767055 -61490475 + L1Md_A LINE L1 5587 6582 0 3 1040 4266 72 71 5 chr12 59767071 59767687 -61489843 + MTA_Mm-int LTR MaLR 288 944 -154 3 1040 1053 39 8 0 chr12 59767677 59767807 -61489723 + MT2C_Mm LTR ERVL 340 470 -5 3 1040 187 31 0 59 chr12 59767807 59767841 -61489689 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 3 1040 2630 170 39 10 chr12 59767848 59767918 -61489612 - Lx9 LINE L1 -190 7454 7387 3 1040 2268 204 17 146 chr12 59767918 59768618 -61488912 + RMER19C LTR ERVK 1 610 -1 3 16 2630 170 39 10 chr12 59768618 59769058 -61488472 - Lx9 LINE L1 -258 7386 6929 3 1041 354 306 44 18 chr12 59769058 59769171 -61488359 + PB1D10 SINE Alu 1 116 -1 3 1041 987 56 0 0 chr12 59769176 59769302 -61488228 + (TGGA)n Simple_repeat Simple_repeat 3 128 0 3 1041 29 0 0 0 chr12 59769315 59769344 -61488186 + AT_rich Low_complexity Low_complexity 1 29 0 3 1041 276 328 0 0 chr12 59769361 59769422 -61488108 + tRNA-Ala-GCA tRNA tRNA 8 68 -7 3 1041 395 320 75 0 chr12 59771028 59771199 -61486331 - MIR3 SINE MIR -11 197 20 3 1041 242 167 18 18 chr12 59772230 59772285 -61485245 + L1VL2 LINE L1 443 497 -5838 3 1041 1110 348 23 16 chr12 59772275 59773105 -61484425 - L1_Mur3 LINE L1 -230 5650 4815 3 1041 1068 64 43 0 chr12 59773189 59773329 -61484201 + B1_Mus1 SINE Alu 1 146 -2 3 1041 405 0 0 0 chr12 59773329 59773374 -61484156 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 3 1041 404 299 65 18 chr12 59773399 59773675 -61483855 + Lx9 LINE L1 7225 7513 -131 3 1041 282 147 0 0 chr12 59773681 59773749 -61483781 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1041 248 0 31 0 chr12 59773766 59773798 -61483732 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1041 186 43 0 0 chr12 59774778 59774801 -61482729 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1041 726 266 28 28 chr12 59775207 59775389 -61482141 + B3A SINE B2 1 182 -16 3 1041 1114 159 68 7 chr12 59776582 59776826 -61480704 + RLTR17 LTR ERVK 1 273 -168 3 1041 2083 181 71 12 chr12 59776820 59777244 -61480286 + RLTR17 LTR ERVK 166 614 -78 3 1041 372 22 0 0 chr12 59777257 59777302 -61480228 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 3 1041 1119 70 0 14 chr12 59777305 59777449 -61480081 - B1_Mus1 SINE Alu -6 142 1 3 1041 213 121 0 0 chr12 59777451 59777484 -61480046 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1041 333 308 8 23 chr12 59778575 59778697 -61478833 - Lx8 LINE L1 -494 6979 6858 3 1041 1559 6 0 6 chr12 59778697 59778878 -61478652 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1041 825 107 0 0 chr12 59778890 59779012 -61478518 + (GGA)n Simple_repeat Simple_repeat 2 123 0 3 1041 543 16 0 0 chr12 59779014 59779078 -61478452 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 3 1041 791 303 78 9 chr12 59779079 59779425 -61478105 - Lx9 LINE L1 -653 6991 6622 3 1041 263 278 42 0 chr12 59779538 59779610 -61477920 - PB1D10 SINE Alu -20 97 23 3 1041 546 294 42 7 chr12 59779829 59779973 -61477557 - B3A SINE B2 -49 149 1 3 1041 316 250 26 13 chr12 59780009 59780086 -61477444 - ID4_ SINE ID -4 79 2 3 1041 294 29 0 0 chr12 59780219 59780254 -61477276 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1041 815 209 94 59 chr12 59780293 59780496 -61477034 - B3 SINE B2 -6 210 1 3 1041 3486 15 5 0 chr12 59780599 59780993 -61476537 - MTA_Mm LTR MaLR 0 396 1 4 1041 9084 33 6 1 chr12 59780993 59782086 -61475444 - MTA_Mm-int LTR MaLR 0 1098 1 4 1041 3486 15 5 0 chr12 59782086 59782480 -61475050 - MTA_Mm LTR MaLR 0 396 1 4 1041 475 268 0 18 chr12 59782483 59782597 -61474933 + PB1D10 SINE Alu 6 117 0 4 1041 441 81 0 0 chr12 59784131 59784193 -61473337 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1041 28 48 0 0 chr12 59784272 59784314 -61473216 + AT_rich Low_complexity Low_complexity 1 42 0 4 1041 283 313 26 0 chr12 59784441 59784556 -61472974 + L1MA4A LINE L1 5804 5921 -382 4 1041 519 271 128 36 chr12 59784728 59784923 -61472607 + ID_B1 SINE B4 3 215 -9 4 1041 237 291 51 0 chr12 59785134 59785213 -61472317 + ID4_ SINE ID 1 83 0 4 1041 323 68 0 0 chr12 59785379 59785423 -61472107 + L1_Mus2 LINE L1 6043 6086 -480 4 1041 243 0 0 0 chr12 59785846 59785873 -61471657 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 4 1041 232 310 70 0 chr12 59785929 59786000 -61471530 + ID4_ SINE ID 2 77 -6 4 1041 208 219 0 0 chr12 59786125 59786166 -61471364 + GA-rich Low_complexity Low_complexity 2 42 0 4 1041 201 271 0 0 chr12 59786319 59786367 -61471163 + A-rich Low_complexity Low_complexity 2 49 0 4 1041 484 253 101 25 chr12 59786965 59787123 -61470407 + MER2B DNA MER2_type 165 334 -2 4 1041 519 326 31 4 chr12 59787362 59787590 -61469940 + Lx7 LINE L1 7069 7302 -394 4 1041 265 135 42 73 chr12 59787613 59787709 -61469821 + T-rich Low_complexity Low_complexity 3 95 0 4 1041 207 146 0 0 chr12 59787714 59787755 -61469775 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1041 34674 32 1 8 chr12 59787854 59793000 -61464530 + L1Md_T LINE L1 481 5586 -297 4 1041 8410 35 0 0 chr12 59793000 59793993 -61463537 + L1Md_T LINE L1 5587 6579 -3 4 1041 943 153 80 0 chr12 59794139 59794302 -61463228 - Lx9 LINE L1 -406 7238 7063 4 1041 688 220 217 13 chr12 59794298 59794512 -61463018 + Lx9 LINE L1 7235 7479 -165 4 1041 429 20 0 0 chr12 59794512 59794562 -61462968 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1041 688 220 217 13 chr12 59794562 59794646 -61462884 + Lx9 LINE L1 7480 7593 -51 4 1041 4732 101 38 8 chr12 59795493 59796202 -61461328 + L1_Mus3 LINE L1 5904 6633 -5 4 1041 1049 158 6 0 chr12 59797581 59797752 -61459778 - URR1B DNA MER1_type 0 225 54 4 1041 2927 186 39 3 chr12 59797897 59798463 -61459067 + RMER1B Other Other 479 1064 -2 4 1041 1700 222 148 24 chr12 59800070 59800556 -61456974 + RMER19C LTR ERVK 1 611 0 4 1041 787 220 140 22 chr12 59800663 59800891 -61456639 - RLTR22_Mur LTR ERVK 0 1848 1594 4 1041 29896 103 7 3 chr12 59801135 59807249 -61450281 + L1_Mus1 LINE L1 421 6561 -6 4 1041 3125 183 29 0 chr12 59807289 59807901 -61449629 - RLTR22_Mur LTR ERVK -997 851 222 4 1041 1041 238 169 9 chr12 59808036 59808362 -61449168 - MTD LTR MaLR 0 419 42 4 1041 528 248 13 38 chr12 59810245 59810404 -61447126 + MER2 DNA MER2_type 103 257 -88 4 1041 432 0 0 0 chr12 59810430 59810478 -61447052 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 4 1041 415 263 78 72 chr12 59810478 59810601 -61446929 + MER2 DNA MER2_type 164 282 -63 4 1041 1362 6 12 12 chr12 59810601 59810773 -61446757 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 4 1041 415 263 78 72 chr12 59810773 59810829 -61446701 + MER2 DNA MER2_type 283 343 -2 4 1041 546 358 29 0 chr12 59811639 59811812 -61445718 - ID_B1 SINE B4 -9 215 38 4 1041 24 32 0 0 chr12 59811904 59811935 -61445595 + AT_rich Low_complexity Low_complexity 1 31 0 4 1041 420 266 31 25 chr12 59812119 59812281 -61445249 - L1MA4A LINE L1 -368 5935 5773 4 1041 547 240 173 24 chr12 59812350 59812598 -61444932 - B4 SINE B4 -7 285 1 4 1041 231 347 28 47 chr12 59812832 59812938 -61444592 - MER94 DNA AcHobo -26 108 5 4 1041 4756 117 21 75 chr12 59813708 59814523 -61443007 - Lx2B LINE L1 0 7000 6230 4 1041 3253 101 18 8 chr12 59814523 59815023 -61442507 + Lx2B LINE L1 5722 6226 -774 4 1041 22 35 0 0 chr12 59815095 59815124 -61442406 + AT_rich Low_complexity Low_complexity 1 29 0 4 1041 2132 121 11 20 chr12 59816401 59816646 -61440884 - L1_Mur2 LINE L1 -124 5753 5507 4 1041 2668 63 27 44 chr12 59816646 59817011 -61440519 + RLTR10D LTR ERVK 1 359 0 4 1041 2132 121 11 20 chr12 59817011 59817112 -61440418 - L1_Mur2 LINE L1 -371 5506 5410 4 1041 1286 161 55 4 chr12 59817117 59817354 -61440176 + Lx4A LINE L1 6810 7058 0 4 1041 21 0 0 0 chr12 59817354 59817375 -61440155 + AT_rich Low_complexity Low_complexity 1 21 0 4 1041 413 369 49 12 chr12 59817412 59817656 -61439874 - L1ME3B LINE L1 -365 5875 5623 4 1041 582 103 0 0 chr12 59818433 59818520 -61439010 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 4 1041 1564 55 10 0 chr12 59820788 59820989 -61436541 + MTB_Mm LTR MaLR 3 205 -202 4 1041 847 80 0 0 chr12 59820995 59821108 -61436422 + B1_Mus1 SINE Alu 36 148 0 4 1041 287 203 14 0 chr12 59821122 59821191 -61436339 + GA-rich Low_complexity Low_complexity 2 71 0 4 1041 1064 126 6 0 chr12 59821193 59821367 -61436163 + (GAAAA)n Simple_repeat Simple_repeat 4 178 0 4 1041 1482 69 29 5 chr12 59821368 59821572 -61435958 + MTB_Mm LTR MaLR 192 400 0 4 1041 21 57 0 0 chr12 59821826 59821861 -61435669 + AT_rich Low_complexity Low_complexity 1 35 0 4 1041 327 371 110 52 chr12 59823034 59823415 -61434115 + MLT1I LTR MaLR 3 405 -6 4 1041 23 0 0 0 chr12 59823721 59823744 -61433786 + AT_rich Low_complexity Low_complexity 1 23 0 4 1041 6109 35 1 0 chr12 59823746 59824468 -61433062 - L1Md_T LINE L1 -5 6577 5855 4 1041 780 291 88 16 chr12 59826121 59826428 -61431102 - Lx8 LINE L1 -576 6897 6569 4 1041 1964 99 46 62 chr12 59826440 59826764 -61430766 - ORR1A2 LTR MaLR -8 319 1 4 1041 754 243 39 10 chr12 59826795 59826999 -61430531 - Lx8 LINE L1 -976 6497 6288 4 1041 1691 268 78 4 chr12 59827001 59827540 -61429990 + Lx8 LINE L1 6889 7467 -6 4 1041 238 362 12 68 chr12 59827798 59827961 -61429569 - RMER4B LTR ERVK -422 163 10 4 1041 1019 276 121 15 chr12 59828332 59828736 -61428794 - RMER5 LTR ERV1 -40 494 48 4 1041 207 186 0 0 chr12 59829555 59829598 -61427932 + (CACCAT)n Simple_repeat Simple_repeat 1 43 0 4 1041 389 206 21 11 chr12 59830823 59830916 -61426614 + ORR1D2 LTR MaLR 2 95 -275 4 1041 11466 61 2 6 chr12 59831998 59833449 -61424081 + L1Md_F2 LINE L1 4141 5586 -297 4 1041 8428 59 0 5 chr12 59833449 59834449 -61423081 + L1Md_F2 LINE L1 5587 6581 -1 4 1041 708 281 92 34 chr12 59834452 59834658 -61422872 + ORR1D2 LTR MaLR 88 305 -65 4 1041 5681 180 52 79 chr12 59834683 59835279 -61422251 - L1_Mur3 LINE L1 -3258 2622 2056 4 1041 258 81 0 0 chr12 59835279 59835316 -61422214 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1041 5681 180 52 79 chr12 59835316 59835378 -61422152 - L1_Mur3 LINE L1 -3825 2055 1995 4 1041 2686 172 41 65 chr12 59835378 59835919 -61421611 - RLTR24 LTR ERV1 -1 528 1 4 1041 5681 180 52 79 chr12 59835919 59836191 -61421339 - L1_Mur3 LINE L1 -3886 1994 1749 4 1041 6691 30 13 0 chr12 59836191 59836944 -61420586 - L1Md_F3 LINE L1 0 6584 5822 4 1041 5681 180 52 79 chr12 59836944 59837409 -61420121 - L1_Mur3 LINE L1 -4132 1748 1265 4 1041 4711 152 51 65 chr12 59837409 59838312 -61419218 + RMER19B LTR ERVK 1 890 -12 4 1041 3987 191 28 34 chr12 59838325 59839234 -61418296 - L1_Mur3 LINE L1 -6459 1269 312 4 1041 231 36 0 0 chr12 59839625 59839653 -61417877 + (TTGG)n Simple_repeat Simple_repeat 3 30 0 4 1041 908 133 7 0 chr12 59839654 59839789 -61417741 - B1_Mur4 SINE Alu -1 149 14 4 1041 1181 192 91 23 chr12 59840438 59840747 -61416783 - Lx9 LINE L1 0 7644 7315 4 1041 908 125 76 23 chr12 59840745 59840917 -61416613 + L1_Rod LINE L1 5026 5206 -641 4 1041 458 122 17 0 chr12 59840915 59841005 -61416525 - L1_Rod LINE L1 -519 5361 5260 4 1041 482 196 12 143 chr12 59841079 59841107 -61416423 - L1_Rod LINE L1 -816 5031 5012 4 1041 1594 57 16 10 chr12 59841107 59841301 -61416229 - B2_Mm2 SINE B2 0 195 1 4 1041 482 196 12 143 chr12 59841301 59841433 -61416097 - L1_Rod LINE L1 -836 5011 4892 4 1041 260 111 31 31 chr12 59842276 59842341 -61415189 + GA-rich Low_complexity Low_complexity 2 66 0 4 1041 3399 53 5 2 chr12 59844220 59844615 -61412915 - MTA_Mm LTR MaLR 0 396 1 4 1041 207 0 0 0 chr12 59845026 59845049 -61412481 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1041 1439 233 105 3 chr12 59845746 59845886 -61411644 - MTD LTR MaLR 0 419 250 4 1041 3322 140 117 155 chr12 59845886 59846289 -61411241 - RMER17D LTR ERVK 0 889 401 4 1041 576 0 0 0 chr12 59846289 59846353 -61411177 + (GGAGA)n Simple_repeat Simple_repeat 2 65 0 4 1041 3322 140 117 155 chr12 59846353 59846873 -61410657 - RMER17D LTR ERVK -489 400 1 4 1041 1439 233 105 3 chr12 59846873 59847093 -61410437 - MTD LTR MaLR -170 249 23 4 1041 2138 43 0 0 chr12 59848030 59848309 -61409221 - L1_Mus1 LINE L1 -734 5833 5555 4 1041 6258 60 9 0 chr12 59848309 59849056 -61408474 + L1_Mus1 LINE L1 5814 6567 0 4 1041 1509 272 59 49 chr12 59849056 59849086 -61408444 + L1_Rod LINE L1 5213 5237 -610 4 1041 1271 55 0 0 chr12 59849086 59849231 -61408299 + B1_Mus1 SINE Alu 2 146 -2 4 1041 1509 272 59 49 chr12 59849231 59849816 -61407714 + L1_Rod LINE L1 5238 5836 -11 4 1041 2493 108 3 0 chr12 59850009 59850334 -61407196 - ORR1A2 LTR MaLR 0 327 2 4 1041 274 280 49 135 chr12 59850501 59850659 -61406871 - L1M2 LINE L1 -742 5558 5416 4 1041 4726 94 8 11 chr12 59850659 59851302 -61406228 - L1_Mus3 LINE L1 -1 6637 5997 4 1041 325 235 20 1 chr12 59851302 59851396 -61406134 - L1M2 LINE L1 -885 5415 5323 4 1041 4813 110 23 56 chr12 59851551 59852301 -61405229 - RMER19A LTR ERVK -12 725 1 4 1041 481 273 7 14 chr12 59852303 59852448 -61405082 - L1M2 LINE L1 -958 5185 5042 4 1041 21 57 0 0 chr12 59852945 59852980 -61404550 + AT_rich Low_complexity Low_complexity 1 35 0 4 1041 22 0 0 0 chr12 59853408 59853430 -61404100 + AT_rich Low_complexity Low_complexity 1 22 0 4 1041 306 310 7 7 chr12 59855829 59855975 -61401555 - L1_Mur3 LINE L1 -4291 1589 1444 4 1041 669 260 76 80 chr12 59857020 59857296 -61400234 + ORR1D2 LTR MaLR 1 275 -95 4 1041 1221 68 0 0 chr12 59857315 59857461 -61400069 + B1_Mus1 SINE Alu 1 146 -2 4 1041 488 181 36 0 chr12 59857480 59857563 -61399967 + B1_Mus2 SINE Alu 1 86 -61 4 1041 6506 171 81 39 chr12 59857563 59858012 -61399518 - Lx5 LINE L1 -93 6957 6514 4 1041 1169 58 0 35 chr12 59858012 59858154 -61399376 - B1_Mm SINE Alu -9 138 2 4 1041 6506 171 81 39 chr12 59858154 59858586 -61398944 - Lx5 LINE L1 -537 6513 6043 4 1041 357 109 0 0 chr12 59858586 59858650 -61398880 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 4 1041 6506 172 70 34 chr12 59858650 59859155 -61398375 - Lx5 LINE L1 -1008 6042 5505 4 1041 510 213 95 81 chr12 59860145 59860293 -61397237 + B4 SINE B4 70 219 -73 4 1041 1045 58 0 21 chr12 59860162 59860303 -61397227 + B1_Mus1 SINE Alu 11 148 0 4 1041 1082 88 66 0 chr12 59860442 59860579 -61396951 + B1_Mus1 SINE Alu 1 146 -2 4 1041 2730 261 143 1 chr12 59860785 59861556 -61395974 + Lx8 LINE L1 6434 7313 -160 4 1041 218 195 0 13 chr12 59861573 59861651 -61395879 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1041 357 184 22 44 chr12 59861720 59861811 -61395719 + Lx8 LINE L1 7385 7473 0 4 1041 1177 154 252 0 chr12 59862304 59862589 -61394941 - ORR1B2 LTR MaLR -10 357 1 4 1041 279 312 160 22 chr12 59862604 59862873 -61394657 + L1M6 LINE L1 1467 1772 -4724 4 1041 26 30 0 0 chr12 59863332 59863365 -61394165 + AT_rich Low_complexity Low_complexity 1 33 0 4 1041 1935 123 24 65 chr12 59863660 59864000 -61393530 - ORR1A3 LTR MaLR 0 326 1 4 1041 242 307 92 85 chr12 59864312 59864572 -61392958 - MLT1J LTR MaLR -27 485 224 5 1041 2110 136 102 25 chr12 59866209 59866670 -61390860 - BGLII_B LTR ERVK -5 436 1 5 1041 966 69 0 0 chr12 59866970 59867114 -61390416 + (TG)n Simple_repeat Simple_repeat 2 145 0 5 1041 890 119 7 0 chr12 59868679 59868822 -61388708 + (GGAA)n Simple_repeat Simple_repeat 3 146 0 5 1041 692 261 33 28 chr12 59869256 59869469 -61388061 + B3 SINE B2 2 215 -1 5 1041 427 286 0 0 chr12 59869501 59869599 -61387931 + ID_B1 SINE B4 81 178 -46 5 1041 270 95 0 0 chr12 59869613 59869655 -61387875 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1041 4237 51 0 4 chr12 59870265 59870799 -61386731 + L1Md_A LINE L1 619 1150 -5574 5 1041 36287 36 0 0 chr12 59870795 59876235 -61381295 + L1Md_T LINE L1 53 5589 -297 5 1041 9557 6 0 0 chr12 59876235 59877231 -61380299 + L1Md_T LINE L1 5590 6585 0 5 1041 34143 25 5 11 chr12 59877246 59881373 -61376157 + L1Md_T LINE L1 1132 5234 -649 5 1041 7908 61 1 0 chr12 59881373 59882304 -61375226 + L1Md_T LINE L1 5651 6582 0 5 1041 248 280 100 153 chr12 59882828 59883077 -61374453 + RMER2 LTR ERV1 332 567 0 5 1041 300 116 0 0 chr12 59884982 59885025 -61372505 + RLTR24 LTR ERV1 2 44 -485 5 1041 314 181 0 0 chr12 59885025 59885083 -61372447 - Lx LINE L1 -384 6252 6195 5 1041 2672 101 43 20 chr12 59885084 59885479 -61372051 + Lx LINE L1 6251 6654 0 5 1041 2435 165 57 75 chr12 59885480 59885985 -61371545 + RLTR24 LTR ERV1 33 528 -1 5 1041 1254 68 12 0 chr12 59886063 59886224 -61371306 - Lx3_Mus LINE L1 -625 6384 6222 5 1041 4523 92 19 10 chr12 59886224 59886841 -61370689 + Lx3_Mus LINE L1 6382 7004 -5 5 1041 252 0 0 0 chr12 59887905 59887933 -61369597 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 5 1041 33106 69 6 2 chr12 59888556 59893751 -61363779 + L1Md_F2 LINE L1 371 5585 -298 5 1041 9039 28 0 3 chr12 59893752 59894749 -61362781 + L1Md_F2 LINE L1 5587 6580 -2 5 1041 479 269 34 0 chr12 59895013 59895132 -61362398 - ORR1E LTR MaLR -236 123 1 5 1041 395 53 35 0 chr12 59895385 59895442 -61362088 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 5 1041 1004 69 122 0 chr12 59895443 59895574 -61361956 - B1_Mus2 SINE Alu 0 147 1 5 1041 241 292 182 24 chr12 59895941 59896106 -61361424 + MLT1C LTR MaLR 270 460 -7 5 1041 8324 66 7 0 chr12 59896531 59897649 -61359881 + L1_Mus3 LINE L1 5511 6636 -2 5 1041 24 0 0 0 chr12 59897769 59897793 -61359737 + AT_rich Low_complexity Low_complexity 1 24 0 5 1041 493 241 0 27 chr12 59898013 59898124 -61359406 + PB1D10 SINE Alu 1 108 -9 5 1041 395 265 87 45 chr12 59899457 59899693 -61357837 - L1M5 LINE L1 -2454 3689 3451 5 1041 21 36 0 0 chr12 59899815 59899843 -61357687 + AT_rich Low_complexity Low_complexity 1 28 0 5 1042 2160 102 0 7 chr12 59900332 59900343 -61357187 + ORR1A2 LTR MaLR 24 34 -293 5 1042 363 23 0 0 chr12 59900343 59900387 -61357143 + (GTTTG)n Simple_repeat Simple_repeat 5 48 0 5 1042 2160 102 0 7 chr12 59900387 59900681 -61356849 + ORR1A2 LTR MaLR 35 326 -1 5 1042 1410 85 23 0 chr12 59900736 59900913 -61356617 + B2_Mm2 SINE B2 1 181 -14 5 1042 398 297 144 82 chr12 59900920 59900941 -61356589 - MTD LTR MaLR -47 360 312 5 1042 420 73 0 0 chr12 59900941 59900996 -61356534 + B2_Mm2 SINE B2 47 101 -94 5 1042 398 297 144 82 chr12 59900996 59901012 -61356518 - MTD LTR MaLR -47 311 268 5 1042 333 0 0 0 chr12 59901012 59901049 -61356481 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 1042 653 254 178 3 chr12 59901049 59901275 -61356255 - MTD LTR MaLR -143 276 20 5 1042 216 0 0 0 chr12 59901275 59901299 -61356231 + (GAA)n Simple_repeat Simple_repeat 2 25 0 5 1042 247 293 49 76 chr12 59901299 59901312 -61356218 - MLT1F-int LTR MaLR -1111 378 365 5 1042 1518 22 0 0 chr12 59901312 59901490 -61356040 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 1042 247 293 49 76 chr12 59901490 59901620 -61355910 - MLT1F-int LTR MaLR -1125 364 239 5 1042 288 211 0 0 chr12 59902713 59902789 -61354741 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1042 297 0 0 0 chr12 59902829 59902862 -61354668 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1042 198 0 0 0 chr12 59903842 59903864 -61353666 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 5 1042 2279 193 60 16 chr12 59904364 59904860 -61352670 + RMER5 LTR ERV1 17 534 0 5 1042 195 139 0 0 chr12 59904991 59905027 -61352503 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1042 422 266 106 0 chr12 59906110 59906223 -61351307 + ID_B1 SINE B4 80 204 -20 5 1042 195 268 69 14 chr12 59906322 59906394 -61351136 + L2b LINE L2 3057 3132 -243 5 1042 180 97 0 0 chr12 59906879 59906910 -61350620 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1042 814 256 179 88 chr12 59909797 59909972 -61347558 + L1MA6 LINE L1 4653 4797 -1346 5 1042 477 50 0 0 chr12 59909972 59910032 -61347498 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 5 1042 814 256 179 88 chr12 59910032 59910119 -61347411 + L1MA6 LINE L1 4798 4889 -1254 5 1042 1580 0 0 4 chr12 59910119 59910384 -61347146 + (GAA)n Simple_repeat Simple_repeat 1 263 0 5 1042 814 272 184 29 chr12 59910384 59911103 -61346427 + L1MA6 LINE L1 4844 5906 -394 5 1042 808 308 36 21 chr12 59911148 59911427 -61346103 + B4A SINE B4 1 283 -9 5 1042 465 76 0 0 chr12 59911452 59911518 -61346012 + (CATA)n Simple_repeat Simple_repeat 3 68 0 5 1042 3337 140 134 39 chr12 59911646 59912204 -61345326 + RMER19C LTR ERVK 1 611 0 5 1042 329 247 79 0 chr12 59912354 59912443 -61345087 + PB1D10 SINE Alu 17 112 -5 5 1042 4780 93 19 11 chr12 59912763 59913407 -61344123 + L1_Mus3 LINE L1 5990 6638 0 5 1042 1664 47 5 0 chr12 59913576 59913767 -61343763 - B2_Mm1a SINE B2 0 193 2 5 1042 573 158 0 29 chr12 59914146 59914250 -61343280 - B1_Mur3 SINE Alu -1 148 48 5 1042 495 0 0 0 chr12 59914250 59914305 -61343225 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1042 481 283 0 9 chr12 59914305 59914412 -61343118 - B3A SINE B2 -92 106 1 5 1042 267 246 227 4 chr12 59915234 59915373 -61342157 - MIR SINE MIR -105 163 1 5 1042 908 206 92 14 chr12 59916694 59916975 -61340555 - Lx3C LINE L1 -54 6927 6651 5 1042 3565 153 28 1 chr12 59916964 59917646 -61339884 - Lx3C LINE L1 -1032 5944 5236 5 1042 1774 116 30 11 chr12 59917643 59917913 -61339617 - Lx3C LINE L1 -784 5093 4819 5 1042 899 121 14 133 chr12 59917903 59918113 -61339417 + L1_Mur2 LINE L1 3737 3921 -1956 5 1042 239 274 14 0 chr12 59918128 59918201 -61339329 - LTR90A LTR LTR -819 157 84 5 1042 755 21 11 0 chr12 59918522 59918615 -61338915 + (TC)n Simple_repeat Simple_repeat 2 95 0 5 1042 618 361 90 31 chr12 59918711 59919065 -61338465 - MLT1F2 LTR MaLR -113 447 73 5 1042 21 36 0 0 chr12 59919745 59919773 -61337757 + AT_rich Low_complexity Low_complexity 1 28 0 5 1042 7301 156 54 12 chr12 59920118 59921505 -61336025 - Lx2B LINE L1 0 7000 5549 5 1042 1804 138 0 0 chr12 59921504 59921795 -61335735 + Lx2B LINE L1 5161 5451 -426 5 1042 1000 61 15 0 chr12 59921798 59921930 -61335600 + B1_Mus1 SINE Alu 15 148 0 5 1042 633 162 0 14 chr12 59921943 59922065 -61335465 + L1_Mur2 LINE L1 5450 5582 -580 5 1042 768 37 0 27 chr12 59922716 59922827 -61334703 + (TTC)n Simple_repeat Simple_repeat 2 109 0 5 1042 247 312 0 30 chr12 59923162 59923228 -61334302 - MIRm SINE MIR -2 274 211 5 1042 208 282 0 66 chr12 59923168 59923244 -61334286 - L2c LINE L2 -10 3377 3307 5 1042 466 259 58 22 chr12 59923246 59923384 -61334146 + MTEb LTR MaLR 237 379 0 5 1042 1651 27 27 0 chr12 59923479 59923663 -61333867 - B2_Mm1a SINE B2 -3 190 2 5 1042 445 245 115 61 chr12 59924658 59924766 -61332764 + RMER1A Other Other 63 160 -870 5 1042 923 0 9 0 chr12 59924766 59924873 -61332657 + (GA)n Simple_repeat Simple_repeat 1 108 0 5 1042 445 245 115 61 chr12 59924873 59924929 -61332601 + RMER1A Other Other 161 235 -795 5 1042 3983 238 96 4 chr12 59924939 59925876 -61331654 + RMER1A Other Other 3 1025 -5 5 1042 279 0 0 0 chr12 59926047 59926078 -61331452 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1042 438 69 0 0 chr12 59926078 59926135 -61331395 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1042 441 317 114 36 chr12 59926542 59926876 -61330654 + MLT1A0 LTR MaLR 4 363 -2 5 1042 180 0 0 0 chr12 59927683 59927703 -61329827 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1042 297 128 0 0 chr12 59928632 59928679 -61328851 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1042 313 397 22 6 chr12 59929233 59929413 -61328117 - LTR50 LTR ERVL -111 684 502 5 1042 450 359 53 24 chr12 59929834 59930076 -61327454 - MIRb SINE MIR -11 257 4 5 1042 245 208 40 30 chr12 59930377 59930476 -61327054 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 1042 300 70 0 0 chr12 59930794 59930837 -61326693 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1042 188 34 0 33 chr12 59931447 59931477 -61326053 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 5 1042 6892 67 34 26 chr12 59931477 59932465 -61325065 - Lx3_Mus LINE L1 -20 6989 5994 5 1042 3809 76 0 2 chr12 59932460 59932937 -61324593 + Lx3_Mus LINE L1 5411 5886 0 5 1042 680 178 136 7 chr12 59932969 59933116 -61324414 + MTD LTR MaLR 246 411 -8 5 1042 601 216 18 0 chr12 59933122 59933233 -61324297 + ORR1C1 LTR MaLR 1 113 -265 5 1042 7662 111 14 0 chr12 59933234 59934784 -61322746 + L1_Mus4 LINE L1 5060 6632 -4 5 1042 1636 132 66 7 chr12 59934817 59935115 -61322415 + ORR1C1 LTR MaLR 55 370 -8 5 1042 442 284 177 63 chr12 59935957 59936104 -61321426 - Lx8 LINE L1 -66 7407 7229 5 1042 207 0 0 0 chr12 59936104 59936127 -61321403 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1042 442 284 177 63 chr12 59936127 59936295 -61321235 - Lx8 LINE L1 -245 7228 7056 5 1042 1630 171 10 20 chr12 59936339 59936643 -61320887 - RLTR10E LTR ERVK -10 301 1 5 1042 240 232 55 99 chr12 59936663 59936754 -61320776 + LTR81C LTR ERV1? 257 343 -810 5 1042 303 130 0 0 chr12 59936754 59936800 -61320730 - Lx8 LINE L1 -556 6917 6872 5 1042 468 0 0 0 chr12 59938066 59938118 -61319412 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1042 377 345 58 0 chr12 59938937 59939076 -61318454 - RSINE1 SINE B4 -2 163 17 5 1042 603 327 24 6 chr12 59940384 59940550 -61316980 + B4A SINE B4 1 169 -123 5 1042 627 150 3 32 chr12 59940552 59940692 -61316838 + ORR1D1 LTR MaLR 29 157 -221 5 1042 395 141 31 0 chr12 59941387 59941451 -61316079 - L1_Mur2 LINE L1 -667 5210 5145 5 1042 5016 136 11 3 chr12 59941451 59942195 -61315335 + Lx2B LINE L1 6241 6990 -10 5 1042 953 128 228 22 chr12 59942621 59942805 -61314725 - URR1A DNA MER1_type 0 226 5 5 1042 1086 182 215 8 chr12 59942850 59943115 -61314415 + Lx LINE L1 6335 6654 0 5 1042 530 285 55 24 chr12 59943133 59943365 -61314165 + L1MB1 LINE L1 5675 5916 -375 5 1042 683 286 155 14 chr12 59945206 59945490 -61312040 - MLT1D LTR MaLR -181 324 1 5 1042 549 231 0 0 chr12 59948318 59948426 -61309104 + ID_B1 SINE B4 115 222 -2 6 1042 220 240 200 0 chr12 59948448 59948548 -61308982 - MIRb SINE MIR -109 159 40 6 1042 339 288 7 81 chr12 59948689 59948825 -61308705 + MLT1J1 LTR MaLR 69 194 -250 6 1042 308 343 65 16 chr12 59948825 59949009 -61308521 + L1MA4A LINE L1 4933 5125 -1018 6 1042 473 307 64 64 chr12 59949009 59949242 -61308288 + B4A SINE B4 2 234 -58 6 1042 753 242 79 20 chr12 59949263 59949465 -61308065 + B3 SINE B2 1 214 -2 6 1042 730 306 78 40 chr12 59949513 59949870 -61307660 + L1MA4A LINE L1 5128 5511 -792 6 1042 1219 61 0 0 chr12 59949870 59950018 -61307512 + B1_Mus1 SINE Alu 1 148 0 6 1042 730 295 95 42 chr12 59950018 59950401 -61307129 + L1MA4A LINE L1 5512 5932 -371 6 1042 340 295 38 77 chr12 59951165 59951404 -61306126 - MTEb LTR MaLR -2 368 117 6 1042 242 116 47 0 chr12 59951515 59951558 -61305972 - B3A SINE B2 -153 45 1 6 1042 2134 103 25 3 chr12 59951568 59951888 -61305642 - L1_Mus3 LINE L1 -4 6634 6308 6 1042 2820 188 49 0 chr12 59951962 59952468 -61305062 + MT2A LTR ERVL 1 531 -2 6 1042 1071 216 81 113 chr12 59952985 59953429 -61304101 + RLTR23 LTR ERV1 1 430 0 6 1042 238 358 17 17 chr12 59953495 59953671 -61303859 + L1MC4a LINE L1 7159 7334 -708 6 1042 2091 124 54 88 chr12 59953728 59954135 -61303395 + RLTR9C LTR ERVK 1 393 0 6 1042 380 325 137 22 chr12 59954187 59954232 -61303298 + L1MC4a LINE L1 7458 7508 -374 6 1042 2508 188 10 16 chr12 59954232 59954741 -61302789 - RLTR19C LTR ERVK 0 506 1 6 1042 380 325 137 22 chr12 59954741 59954966 -61302564 + L1MC4a LINE L1 7509 7759 -123 6 1042 3121 291 69 15 chr12 59955750 59956929 -61300601 - Lx8 LINE L1 -147 7326 6085 6 1042 558 250 92 0 chr12 59957097 59957217 -61300313 + B1_Mm SINE Alu 10 140 -7 6 1042 309 169 0 0 chr12 59957225 59957284 -61300246 + GA-rich Low_complexity Low_complexity 2 60 0 6 1042 4340 55 0 4 chr12 59957982 59958514 -61299016 + L1_Mus1 LINE L1 6036 6565 -2 6 1042 308 284 58 10 chr12 59958788 59958891 -61298639 - LTR50 LTR ERVL -682 113 6 6 1042 36418 32 2 7 chr12 59959185 59964718 -61292812 + L1Md_A LINE L1 254 5754 -129 6 1042 33512 48 0 3 chr12 59964718 59970025 -61287505 + L1Md_F2 LINE L1 204 5589 -297 6 1042 7497 64 7 6 chr12 59970026 59971010 -61286520 + L1Md_F2 LINE L1 5591 6575 -10 6 1042 520 233 52 22 chr12 59971021 59971157 -61286373 + B1F1 SINE Alu 1 140 -9 6 1042 418 257 59 0 chr12 59971215 59971367 -61286163 - L1MA6 LINE L1 -6 6294 6134 6 1042 268 266 119 45 chr12 59971432 59971609 -61285921 + L1M2 LINE L1 5005 5194 -949 6 1042 238 344 41 20 chr12 59971725 59971823 -61285707 + MIR SINE MIR 30 129 -133 6 1042 252 0 0 0 chr12 59971896 59971924 -61285606 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1042 646 350 11 6 chr12 59971926 59972104 -61285426 - B4A SINE B4 -23 269 91 6 1042 26 30 0 0 chr12 59972107 59972140 -61285390 + AT_rich Low_complexity Low_complexity 1 33 0 6 1042 3885 184 65 36 chr12 59972161 59972240 -61285290 - Lx5 LINE L1 -44 7006 6898 6 1042 288 0 0 0 chr12 59972240 59972272 -61285258 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1042 381 43 0 0 chr12 59972272 59972318 -61285212 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1042 3885 184 65 36 chr12 59972318 59973189 -61284341 - Lx5 LINE L1 -153 6897 6028 6 1042 447 340 162 26 chr12 59973367 59973669 -61283861 - MLT1J-int LTR MaLR -1040 347 5 6 1042 533 15 15 0 chr12 59973955 59974021 -61283509 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 1042 1235 327 158 13 chr12 59974531 59975157 -61282373 - MLT2B5 LTR ERVL 0 717 1 6 1042 212 213 16 0 chr12 59975333 59975394 -61282136 + GA-rich Low_complexity Low_complexity 4 65 0 6 1042 3286 181 77 25 chr12 59975891 59976516 -61281014 + Lx9 LINE L1 6807 7470 -174 6 1042 363 105 0 0 chr12 59976516 59976573 -61280957 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1042 3286 181 77 25 chr12 59976573 59976735 -61280795 + Lx9 LINE L1 7471 7635 -9 6 1042 365 367 72 0 chr12 59976880 59977060 -61280470 - MIRb SINE MIR -16 252 60 6 1042 21 36 0 0 chr12 59977177 59977205 -61280325 + AT_rich Low_complexity Low_complexity 1 28 0 6 1042 676 271 17 35 chr12 59977734 59977906 -61279624 - B3A SINE B2 -22 176 8 6 1042 2935 211 75 17 chr12 59977916 59979192 -61278338 - Lx7 LINE L1 0 7696 6347 6 1042 457 247 12 20 chr12 59979211 59979317 -61278213 + B1F2 SINE Alu 13 118 -31 6 1042 24 32 0 0 chr12 59979536 59979567 -61277963 + AT_rich Low_complexity Low_complexity 1 31 0 6 1042 261 75 0 0 chr12 59979939 59979979 -61277551 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1042 360 0 0 0 chr12 59980904 59980944 -61276586 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 6 1042 346 311 47 53 chr12 59981443 59981633 -61275897 - MIR SINE MIR -68 194 6 6 1042 1858 136 90 10 chr12 59981908 59982219 -61275311 - ORR1B1 LTR MaLR -18 376 41 6 1042 673 267 11 68 chr12 59982527 59982704 -61274826 + B3A SINE B2 24 190 -8 6 1042 200 276 53 75 chr12 59983210 59983304 -61274226 + L2c LINE L2 3291 3382 -5 6 1042 578 200 0 43 chr12 59983378 59983493 -61274037 - PB1D10 SINE Alu -2 115 6 6 1042 876 278 22 0 chr12 59983529 59983756 -61273774 - B4 SINE B4 -53 239 8 6 1042 741 278 87 23 chr12 59983811 59984076 -61273454 - B4A SINE B4 -10 282 1 6 1042 40 67 0 0 chr12 59984365 59984440 -61273090 + AT_rich Low_complexity Low_complexity 1 75 0 6 1042 720 272 69 5 chr12 59984524 59984727 -61272803 + ID_B1 SINE B4 2 217 -7 6 1042 759 217 0 7 chr12 59986967 59987106 -61270424 + ID_B1 SINE B4 80 217 -7 6 1042 263 227 53 0 chr12 59987255 59987330 -61270200 - MTD LTR MaLR -340 79 1 6 1042 265 370 28 0 chr12 59987388 59987496 -61270034 + MLT1L LTR MaLR 90 200 -410 6 1042 829 204 76 10 chr12 59988085 59988283 -61269247 - B3 SINE B2 -5 211 1 6 1042 339 85 0 0 chr12 59988385 59988432 -61269098 + (TAA)n Simple_repeat Simple_repeat 1 47 0 6 1042 226 298 61 96 chr12 59988539 59988654 -61268876 + MLT1M LTR MaLR 61 171 -501 6 1042 367 285 20 13 chr12 59988772 59988925 -61268605 + Lx8 LINE L1 6899 7052 -421 6 1042 3534 117 15 4 chr12 59988925 59989457 -61268073 + Lx4A LINE L1 6521 7058 0 6 1042 1085 272 74 33 chr12 59989480 59989871 -61267659 + Lx8 LINE L1 7041 7447 -26 6 1042 1784 137 17 106 chr12 59989941 59990300 -61267230 + ORR1A4 LTR MaLR 1 327 -2 6 1042 931 265 138 24 chr12 59990532 59990884 -61266646 - MTD LTR MaLR 0 419 6 6 1042 543 246 17 0 chr12 59990915 59991033 -61266497 + MLT2D LTR ERVL 1 120 -294 6 1042 423 56 0 0 chr12 59991075 59991129 -61266401 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1042 653 291 116 40 chr12 59991334 59991610 -61265920 + MLT2D LTR ERVL 118 414 0 6 1042 1217 125 70 24 chr12 59992800 59993013 -61264517 - Lx2 LINE L1 0 6997 6775 6 1042 3607 111 51 13 chr12 59993013 59993617 -61263913 - Lx2 LINE L1 -354 6643 6017 6 1042 306 0 0 0 chr12 59993632 59993666 -61263864 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6 1042 456 252 76 19 chr12 59993685 59993790 -61263740 - RSINE1 SINE B4 -52 113 3 6 1042 272 377 0 25 chr12 59993961 59994040 -61263490 + RSINE1 SINE B4 4 80 -85 6 1042 2372 63 13 0 chr12 59994041 59994343 -61263187 + L1_Mus1 LINE L1 6262 6567 0 6 1042 21 0 0 0 chr12 59994484 59994505 -61263025 + AT_rich Low_complexity Low_complexity 1 21 0 6 1042 487 96 12 12 chr12 59995313 59995397 -61262133 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1042 229 340 9 78 chr12 59995404 59995519 -61262011 - MLT2B1 LTR ERVL -339 181 75 6 1042 356 332 152 0 chr12 59995627 59995844 -61261686 - L2 LINE L2 -930 2489 2240 6 1042 480 255 38 25 chr12 59995912 59996069 -61261461 - HAL1-2a_MD LINE L1 -521 2503 2345 6 1042 278 336 18 35 chr12 59996079 59996193 -61261337 - MLT2B5 LTR ERVL -403 198 87 6 1042 1028 168 142 0 chr12 59996819 59997016 -61260514 + URR1B DNA MER1_type 1 225 0 6 1042 498 61 0 0 chr12 59997121 59997187 -61260343 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 6 1042 270 95 0 0 chr12 59997187 59997229 -61260301 + (CATA)n Simple_repeat Simple_repeat 1 42 0 6 1042 512 66 0 26 chr12 59998784 59998862 -61258668 + (GGGA)n Simple_repeat Simple_repeat 2 77 0 6 1042 918 193 47 60 chr12 59999227 59999442 -61258088 - B3 SINE B2 -4 212 1 6 1042 25 31 0 0 chr12 59999905 59999937 -61257593 + AT_rich Low_complexity Low_complexity 1 32 0 6 1042 638 235 0 8 chr12 60000000 60000120 -61257410 - RSINE1 SINE B4 -44 121 3 1 1042 1734 102 8 15 chr12 60000151 60000410 -61257120 + L1Md_F2 LINE L1 6324 6580 -2 2 1042 478 206 9 29 chr12 60000568 60000673 -61256857 + PB1D10 SINE Alu 10 112 -5 3 1042 3117 128 47 72 chr12 60000757 60001355 -61256175 - Lx4A LINE L1 -1 7057 6475 4 1042 1054 220 14 9 chr12 60001991 60002202 -61255328 + B3 SINE B2 5 216 0 5 1042 513 187 0 11 chr12 60002240 60002332 -61255198 + PB1D7 SINE Alu 30 120 0 6 1042 441 290 60 17 chr12 60002402 60002637 -61254893 - L1M5 LINE L1 -339 5785 5541 7 1042 402 225 110 17 chr12 60002984 60003125 -61254405 - ORR1D2 LTR MaLR 0 370 231 8 1042 2425 146 5 8 chr12 60003130 60003510 -61254020 - RLTR14 LTR ERV1 -1 381 3 9 1042 180 0 0 0 chr12 60003865 60003885 -61253645 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1042 459 0 0 0 chr12 60004658 60004709 -61252821 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1042 1835 93 68 4 chr12 60005872 60006152 -61251378 + L1_Mus3 LINE L1 6335 6632 -6 1 1042 3447 38 2 0 chr12 60006182 60006577 -61250953 + MTA_Mm LTR MaLR 1 396 0 1 1042 355 157 14 0 chr12 60006585 60006655 -61250875 + ORR1A3 LTR MaLR 256 326 0 1 1042 709 277 41 16 chr12 60006655 60006899 -61250631 - B4A SINE B4 -42 250 1 1 1042 240 111 0 0 chr12 60007151 60007187 -61250343 + (ATG)n Simple_repeat Simple_repeat 3 38 0 1 1042 543 270 99 17 chr12 60007512 60007693 -61249837 + B3A SINE B2 3 198 0 1 1042 324 64 0 0 chr12 60007852 60007899 -61249631 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1042 229 26 26 26 chr12 60008722 60008761 -61248769 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1042 188 343 115 14 chr12 60009416 60009555 -61247975 - MIRb SINE MIR -48 220 68 2 1042 182 305 89 30 chr12 60009758 60009927 -61247603 - MIR SINE MIR -10 252 74 2 1042 1838 142 77 17 chr12 60010040 60010202 -61247328 + ORR1C1 LTR MaLR 6 163 -215 2 1042 495 0 0 0 chr12 60010202 60010257 -61247273 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1042 290 26 26 0 chr12 60010257 60010295 -61247235 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1042 1838 142 77 17 chr12 60010295 60010483 -61247047 + ORR1C1 LTR MaLR 164 376 -2 2 1042 402 303 120 29 chr12 60010891 60011166 -61246364 - L2 LINE L2 -956 2463 2164 2 1042 4190 117 21 3 chr12 60011491 60012115 -61245415 + Lx2 LINE L1 6362 6996 -1 2 1042 397 329 59 0 chr12 60012131 60012283 -61245247 - L2 LINE L2 -1668 1751 1591 2 1042 372 304 37 51 chr12 60012390 60012426 -61245104 + L1M5 LINE L1 5462 5492 -748 2 1042 558 43 0 0 chr12 60012426 60012495 -61245035 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1042 372 304 37 51 chr12 60012495 60012673 -61244857 + L1M5 LINE L1 5493 5672 -568 2 1042 478 179 284 9 chr12 60012860 60013021 -61244509 - Lx3C LINE L1 0 7000 6796 2 1042 7317 166 64 33 chr12 60013492 60014426 -61243104 - Lx5 LINE L1 -1 7049 6091 3 1042 414 0 0 0 chr12 60014426 60014472 -61243058 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1042 468 0 0 0 chr12 60014472 60014523 -61243007 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1042 7317 126 46 23 chr12 60014523 60015553 -61241977 - Lx5 LINE L1 -960 6090 5027 3 1042 1328 89 26 21 chr12 60016065 60016259 -61241271 - B2_Mm2 SINE B2 0 195 1 3 1042 461 240 0 10 chr12 60016289 60016390 -61241140 - PB1D10 SINE Alu -17 100 1 3 1042 805 202 42 0 chr12 60016532 60016725 -61240805 - L1MEf LINE L1 -5137 1063 863 3 1042 357 43 0 0 chr12 60016753 60016800 -61240730 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 3 1042 22 56 0 0 chr12 60016859 60016895 -61240635 + AT_rich Low_complexity Low_complexity 1 36 0 3 1042 204 40 0 0 chr12 60017076 60017101 -61240429 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 1042 307 287 21 0 chr12 60017103 60017197 -61240333 - PB1D10 SINE Alu -13 104 9 3 1042 225 222 37 0 chr12 60017241 60017295 -61240235 - L1MEf LINE L1 -5436 658 603 3 1042 339 214 5 54 chr12 60018225 60018310 -61239220 + ID4_ SINE ID 2 85 -67 4 1042 721 253 28 0 chr12 60018739 60018921 -61238609 - B3 SINE B2 -3 213 27 4 1042 1613 107 63 33 chr12 60018934 60019205 -61238325 - Lx LINE L1 -14 6640 6362 4 1042 1083 79 0 7 chr12 60019300 60019440 -61238090 - B1_Mus1 SINE Alu -9 139 1 4 1042 431 133 0 26 chr12 60019475 60019552 -61237978 + Lx7 LINE L1 7622 7696 0 4 1042 21 57 0 0 chr12 60019565 60019600 -61237930 + AT_rich Low_complexity Low_complexity 1 35 0 4 1042 536 208 0 0 chr12 60019647 60019753 -61237777 + PB1D7 SINE Alu 15 120 0 4 1042 909 271 60 50 chr12 60020113 60020396 -61237134 + B4 SINE B4 1 286 -6 4 1042 396 0 0 0 chr12 60020400 60020444 -61237086 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1042 691 111 56 0 chr12 60020619 60020727 -61236803 + ORR1D2 LTR MaLR 1 114 -256 4 1042 1245 93 0 40 chr12 60020727 60020928 -61236602 + L1_Mus4 LINE L1 6438 6630 -6 5 1042 240 35 0 0 chr12 60020969 60020998 -61236532 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1042 1406 88 0 5 chr12 60021016 60021200 -61236330 + B2_Mm2 SINE B2 1 183 -12 5 1042 418 296 51 38 chr12 60021214 60021372 -61236158 + ORR1D2 LTR MaLR 137 296 -74 4 1042 25 51 0 0 chr12 60021458 60021497 -61236033 + AT_rich Low_complexity Low_complexity 1 39 0 5 1042 785 125 35 22 chr12 60022307 60022679 -61234851 + C-rich Low_complexity Low_complexity 1 377 0 5 1042 793 233 40 91 chr12 60023758 60023930 -61233600 + B3 SINE B2 2 174 -42 5 1042 369 0 0 0 chr12 60023930 60023971 -61233559 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1042 541 233 40 91 chr12 60023971 60023996 -61233534 + B2_Mm2 SINE B2 169 189 -6 5 1042 420 242 10 10 chr12 60025376 60025472 -61232058 - MTE2a LTR MaLR -82 297 202 5 1042 219 139 0 0 chr12 60025586 60025622 -61231908 + (TTA)n Simple_repeat Simple_repeat 2 37 0 5 1042 857 120 42 7 chr12 60025788 60025931 -61231599 + B1_Mur4 SINE Alu 1 148 -2 5 1042 217 253 37 74 chr12 60025966 60026047 -61231483 + ID4_ SINE ID 2 79 -4 6 1042 239 311 72 96 chr12 60026188 60026355 -61231175 + ID_B1 SINE B4 38 200 -24 6 1042 279 0 0 0 chr12 60026920 60026951 -61230579 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1042 212 93 0 44 chr12 60027006 60027051 -61230479 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 6 1042 377 188 12 0 chr12 60027910 60027995 -61229535 + GA-rich Low_complexity Low_complexity 3 88 0 6 1042 1648 303 65 65 chr12 60028602 60028814 -61228716 + L1_Rod LINE L1 4597 4793 -1054 6 1042 1187 169 128 207 chr12 60028814 60029269 -61228261 + MTD LTR MaLR 1 419 0 6 1042 1648 303 65 65 chr12 60029269 60030293 -61227237 + L1_Rod LINE L1 4794 5832 -15 6 1042 751 244 118 19 chr12 60030518 60030781 -61226749 - Lx8 LINE L1 -390 7083 6795 6 1042 1009 84 41 24 chr12 60030782 60030952 -61226578 + B2_Mm2 SINE B2 23 195 0 6 130 1144 225 115 11 chr12 60030954 60031215 -61226315 - Lx8 LINE L1 -668 6805 6518 6 1043 529 199 118 8 chr12 60031246 60031373 -61226157 + B1F SINE Alu 1 141 -8 6 1043 35 0 0 0 chr12 60031374 60031409 -61226121 + AT_rich Low_complexity Low_complexity 1 35 0 7 1043 240 232 18 18 chr12 60031409 60031466 -61226064 + ID2 SINE ID 2 58 -25 7 1043 532 168 35 18 chr12 60031815 60031985 -61225545 + GA-rich Low_complexity Low_complexity 2 174 0 7 1043 574 297 102 35 chr12 60032479 60032734 -61224796 + B4A SINE B4 2 273 -19 7 1043 296 183 63 7 chr12 60032792 60032935 -61224595 + (TA)n Simple_repeat Simple_repeat 1 151 0 7 1043 1024 176 24 5 chr12 60033101 60033307 -61224223 - B3 SINE B2 0 216 7 7 1043 1262 296 120 38 chr12 60033326 60034068 -61223462 - L1MA5 LINE L1 -362 5938 5066 7 1043 352 244 0 0 chr12 60035026 60035108 -61222422 + ID4_ SINE ID 2 83 0 7 1043 641 282 0 24 chr12 60035251 60035418 -61222112 + RSINE1 SINE B4 3 165 0 7 1043 1175 260 106 27 chr12 60036200 60036568 -61220962 + RMER15 LTR ERVL 179 575 0 7 1043 477 0 0 0 chr12 60037088 60037141 -61220389 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1043 389 321 42 35 chr12 60037382 60037524 -61220006 + ID_B1 SINE B4 81 223 -1 8 1043 230 270 32 0 chr12 60037601 60037664 -61219866 - MER5B DNA MER1_type -112 66 2 8 1043 1379 71 66 0 chr12 60037870 60038052 -61219478 - B2_Mm2 SINE B2 -1 194 1 8 1043 26 30 0 0 chr12 60038400 60038433 -61219097 + AT_rich Low_complexity Low_complexity 1 33 0 8 1043 433 319 47 54 chr12 60038561 60038710 -61218820 + RSINE1 SINE B4 2 149 -16 8 1043 1176 74 11 11 chr12 60038714 60038892 -61218638 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 8 1043 288 0 0 0 chr12 60039270 60039302 -61218228 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1043 441 0 0 0 chr12 60039302 60039350 -61218180 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 1043 22 0 0 0 chr12 60040233 60040255 -61217275 + AT_rich Low_complexity Low_complexity 1 22 0 8 1043 2758 274 71 48 chr12 60040262 60040404 -61217126 - Lx8 LINE L1 0 7473 7335 9 1043 1164 51 0 0 chr12 60040404 60040542 -61216988 + B1_Mm SINE Alu 1 138 -9 9 1043 2758 274 71 48 chr12 60040542 60040680 -61216850 - Lx8 LINE L1 -139 7334 7199 9 1043 405 0 0 0 chr12 60040680 60040725 -61216805 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 1043 2758 274 71 48 chr12 60040725 60041416 -61216114 - Lx8 LINE L1 -275 7198 6479 9 1043 422 176 0 66 chr12 60041879 60041970 -61215560 + B4 SINE B4 2 86 -206 9 1043 365 332 55 23 chr12 60041997 60042156 -61215374 + B4 SINE B4 81 246 -46 9 1043 320 262 19 0 chr12 60042165 60042272 -61215258 + GA-rich Low_complexity Low_complexity 6 114 0 9 1043 457 331 0 31 chr12 60043056 60043184 -61214346 + RSINE1 SINE B4 2 125 -40 9 1043 4196 132 25 36 chr12 60043209 60043366 -61214164 + RLTR22_Mur LTR ERVK 1 154 -1694 9 1043 369 0 0 0 chr12 60043366 60043407 -61214123 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 9 1043 4196 132 25 36 chr12 60043407 60043447 -61214083 + RLTR22_Mur LTR ERVK 155 176 -1672 9 1043 216 0 0 0 chr12 60043447 60043471 -61214059 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 9 1043 4196 132 25 36 chr12 60043471 60044086 -61213444 + RLTR22_Mur LTR ERVK 177 804 -1044 9 1043 408 319 32 60 chr12 60044319 60044536 -61212994 + RMER12 LTR ERVK 1112 1322 0 1 1043 1005 288 55 53 chr12 60044623 60045082 -61212448 + Lx8 LINE L1 6607 7053 -643 1 1043 1543 43 5 0 chr12 60045124 60045310 -61212220 + B2_Mm1a SINE B2 1 187 -6 1 1043 194 382 45 0 chr12 60045976 60046065 -61211465 - MIR SINE MIR -147 115 23 1 1043 1012 200 29 14 chr12 60046951 60047159 -61210371 - B3 SINE B2 0 216 6 1 1043 694 280 49 24 chr12 60047190 60047282 -61210248 + ID_B1 SINE B4 2 101 -123 1 1043 396 40 0 0 chr12 60047282 60047332 -61210198 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1043 694 280 49 24 chr12 60047332 60047444 -61210086 + ID_B1 SINE B4 102 211 -13 1 1043 475 283 41 61 chr12 60047460 60047656 -61209874 + B3A SINE B2 1 192 -6 1 1043 423 0 0 0 chr12 60049525 60049572 -61207958 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1043 329 82 0 0 chr12 60049572 60049621 -61207909 - MusHAL1 LINE L1 -2756 598 550 1 1043 677 52 10 0 chr12 60049621 60049717 -61207813 - L1_Mus2 LINE L1 0 6566 6470 1 1043 233 267 13 39 chr12 60049926 60050004 -61207526 + L1MA5 LINE L1 6224 6299 -1 1 1043 1180 132 11 0 chr12 60050066 60050240 -61207290 + B2_Mm1t SINE B2 2 177 -16 1 1043 381 91 345 26 chr12 60050308 60050421 -61207109 + B2_Mm2 SINE B2 47 195 0 1 1043 1226 54 0 0 chr12 60050567 60050714 -61206816 + B1_Mm SINE Alu 1 147 0 1 1043 529 200 18 0 chr12 60051174 60051284 -61206246 + B1_Mur1 SINE Alu 38 149 0 1 1043 513 288 41 0 chr12 60051398 60051544 -61205986 + RSINE1 SINE B4 8 159 -6 1 1043 23 0 0 0 chr12 60052293 60052316 -61205214 + AT_rich Low_complexity Low_complexity 1 23 0 1 1043 619 183 158 0 chr12 60052471 60052591 -61204939 + B1_Mur2 SINE Alu 5 143 -6 1 1043 597 64 0 0 chr12 60052598 60052676 -61204854 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 1 1043 570 67 0 0 chr12 60053854 60053929 -61203601 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1043 784 120 48 0 chr12 60054198 60054323 -61203207 - B2_Mm2 SINE B2 -30 165 35 1 1043 324 238 0 0 chr12 60054470 60054554 -61202976 + GA-rich Low_complexity Low_complexity 1 84 0 1 1043 925 96 80 15 chr12 60054565 60054702 -61202828 + B1_Mus1 SINE Alu 3 148 0 1 1043 213 121 0 0 chr12 60054702 60054735 -61202795 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1043 537 168 58 27 chr12 60054886 60055009 -61202521 + B3A SINE B2 1 129 -66 1 1043 440 171 181 0 chr12 60055044 60055149 -61202381 + B1_Mus1 SINE Alu 25 148 0 1 1043 200 271 0 33 chr12 60055151 60055212 -61202318 + GA-rich Low_complexity Low_complexity 3 61 0 1 1043 7545 67 5 2 chr12 60055453 60056404 -61201126 - L1_Mus1 LINE L1 0 6567 5614 1 1043 22 56 0 0 chr12 60056517 60056553 -61200977 + AT_rich Low_complexity Low_complexity 1 36 0 1 1043 646 266 173 78 chr12 60057143 60057489 -61200041 - MTEa LTR MaLR 0 379 1 1 1043 207 0 0 0 chr12 60058077 60058100 -61199430 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1043 422 234 137 0 chr12 60058100 60058224 -61199306 + L1MA4 LINE L1 5795 5935 -365 1 1043 831 184 14 0 chr12 60058233 60058380 -61199150 + B1_Mur3 SINE Alu 1 149 0 1 1043 261 0 0 0 chr12 60058380 60058409 -61199121 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1043 275 231 90 0 chr12 60058569 60058647 -61198883 + L1MA4 LINE L1 6194 6278 -22 1 1043 228 378 23 16 chr12 60058917 60059046 -61198484 + B4A SINE B4 11 140 -152 1 1043 230 304 14 55 chr12 60059136 60059209 -61198321 + RSINE1 SINE B4 82 151 -14 1 1043 645 290 122 19 chr12 60059241 60059561 -61197969 + L1MA5 LINE L1 5943 6295 -5 1 1043 691 190 80 0 chr12 60059567 60059704 -61197826 + B1_Mur2 SINE Alu 2 149 0 1 1043 23 54 0 0 chr12 60060401 60060438 -61197092 + AT_rich Low_complexity Low_complexity 1 37 0 1 1043 542 294 108 0 chr12 60061527 60061813 -61195717 + L1MA4 LINE L1 5611 5927 -373 1 1043 519 311 15 35 chr12 60062092 60062292 -61195238 + B3A SINE B2 3 198 0 1 1043 765 255 7 0 chr12 60062297 60062438 -61195092 + B1_Mur3 SINE Alu 2 143 -6 1 1043 24 0 0 0 chr12 60062442 60062466 -61195064 + AT_rich Low_complexity Low_complexity 1 24 0 1 1043 1274 58 6 28 chr12 60062542 60062718 -61194812 + B2_Mm2 SINE B2 15 186 -9 1 1043 552 250 33 82 chr12 60062754 60062937 -61194593 + B3A SINE B2 9 182 -16 1 1043 240 86 0 0 chr12 60062959 60062994 -61194536 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1043 684 215 0 0 chr12 60063115 60063278 -61194252 + CT-rich Low_complexity Low_complexity 2 164 0 1 1043 436 240 231 0 chr12 60063287 60063408 -61194122 - B1_Mur1 SINE Alu 0 149 1 1 1043 4725 196 38 20 chr12 60064348 60064881 -61192649 + Lx6 LINE L1 6499 7035 -425 1 1043 809 167 238 6 chr12 60064881 60065062 -61192468 - URR1B DNA MER1_type -1 224 2 1 1043 4725 196 38 20 chr12 60065062 60065306 -61192224 + Lx6 LINE L1 7036 7291 -169 1 1043 236 0 88 0 chr12 60065306 60065340 -61192190 + (CATAT)n Simple_repeat Simple_repeat 1 37 0 1 1043 4725 196 38 20 chr12 60065340 60065504 -61192026 + Lx6 LINE L1 7292 7458 -2 1 1043 608 239 34 27 chr12 60065524 60065670 -61191860 + RSINE1 SINE B4 16 162 -3 1 1043 210 180 20 0 chr12 60065871 60065921 -61191609 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1043 223 170 0 0 chr12 60066566 60066613 -61190917 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 1 1043 595 266 16 0 chr12 60066820 60066948 -61190582 + RSINE1 SINE B4 3 132 -33 1 1043 494 229 127 14 chr12 60067093 60067235 -61190295 + RSINE1 SINE B4 4 161 -4 1 1043 1281 61 0 0 chr12 60067267 60067414 -61190116 - B1_Mm SINE Alu 0 147 1 1 1043 220 229 246 0 chr12 60067457 60067518 -61190012 + PB1D10 SINE Alu 2 77 -40 1 1043 225 0 0 0 chr12 60068043 60068068 -61189462 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1043 1020 214 18 32 chr12 60068319 60068536 -61188994 + B3 SINE B2 2 215 -1 1 1043 398 179 30 30 chr12 60068916 60069016 -61188514 + PB1D10 SINE Alu 24 117 0 1 1043 243 318 126 9 chr12 60069058 60069169 -61188361 + MIRb SINE MIR 123 246 -22 1 1043 22 56 0 0 chr12 60069956 60069992 -61187538 + AT_rich Low_complexity Low_complexity 1 36 0 1 1043 315 113 0 0 chr12 60070036 60070089 -61187441 + (T)n Simple_repeat Simple_repeat 1 53 0 1 1043 1220 75 7 0 chr12 60070089 60070235 -61187295 - B1_Mus1 SINE Alu 0 148 2 1 1043 748 184 88 0 chr12 60070258 60070383 -61187147 - B1_Mur1 SINE Alu -11 138 3 1 1043 401 242 70 10 chr12 60070437 60070537 -61186993 + PB1D10 SINE Alu 2 107 -10 1 1043 444 123 0 0 chr12 60071078 60071151 -61186379 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1 1043 206 32 32 0 chr12 60071218 60071249 -61186281 + (TATATG)n Simple_repeat Simple_repeat 3 34 0 1 1043 3313 44 0 30 chr12 60071254 60071651 -61185879 - L1Md_F2 LINE L1 -1 6581 6197 1 1043 624 258 15 0 chr12 60071767 60071899 -61185631 + RSINE1 SINE B4 3 136 -29 1 1043 21 36 0 0 chr12 60071935 60071963 -61185567 + AT_rich Low_complexity Low_complexity 1 28 0 1 1043 47 44 0 0 chr12 60072049 60072117 -61185413 + AT_rich Low_complexity Low_complexity 1 68 0 1 1043 653 230 65 0 chr12 60072553 60072692 -61184838 + B1_Mur3 SINE Alu 2 149 0 1 1043 314 0 0 47 chr12 60072993 60073036 -61184494 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 1 1043 487 302 0 0 chr12 60073094 60073210 -61184320 + B3A SINE B2 2 117 -81 1 1043 337 62 0 0 chr12 60073206 60073254 -61184276 + B1_Mur4 SINE Alu 103 150 0 1 1043 382 250 167 54 chr12 60074165 60074351 -61183179 + B3 SINE B2 4 210 -6 1 1043 727 124 266 0 chr12 60074417 60074594 -61182936 + Lx2B LINE L1 6773 6996 -4 1 1043 225 248 123 74 chr12 60074625 60074747 -61182783 + B4A SINE B4 2 129 -163 1 1043 748 159 151 0 chr12 60074774 60074900 -61182630 + B1_Mur4 SINE Alu 2 146 -4 1 1043 402 327 0 0 chr12 60074978 60075079 -61182451 + PB1D10 SINE Alu 10 110 -7 1 1043 186 43 0 0 chr12 60075089 60075112 -61182418 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1043 1289 87 0 0 chr12 60076084 60076256 -61181274 + B2_Mm2 SINE B2 1 172 -23 1 1043 1570 47 0 54 chr12 60076262 60076465 -61181065 + B2_Mm1a SINE B2 1 192 -1 1 1043 207 0 0 0 chr12 60076738 60076761 -61180769 + (G)n Simple_repeat Simple_repeat 1 23 0 1 1043 1273 309 114 122 chr12 60077134 60077398 -61180132 + Charlie6 DNA MER1_type 494 742 -2758 1 1043 1284 48 0 0 chr12 60077398 60077545 -61179985 + B1_Mus2 SINE Alu 1 147 0 1 1043 1273 309 114 122 chr12 60077545 60078074 -61179456 + Charlie6 DNA MER1_type 743 1205 -2295 1 1043 625 126 216 48 chr12 60078074 60078241 -61179289 + B2_Mm2 SINE B2 1 195 0 1 1043 1273 309 114 122 chr12 60078241 60078655 -61178875 + Charlie6 DNA MER1_type 1206 1662 -1838 1 1043 1468 85 5 0 chr12 60078655 60078843 -61178687 - B2_Mm1t SINE B2 -4 189 1 1 1043 1273 309 114 122 chr12 60078843 60078975 -61178555 + Charlie6 DNA MER1_type 1663 1823 -1677 1 1043 221 217 350 0 chr12 60079015 60079075 -61178455 + B1F SINE Alu 15 95 -54 1 1043 262 109 69 52 chr12 60079142 60079200 -61178330 + B1_Mur1 SINE Alu 91 149 0 1 1043 507 277 30 42 chr12 60079882 60080048 -61177482 + RSINE1 SINE B4 2 165 0 1 1043 1230 95 0 0 chr12 60080229 60080397 -61177133 - B2_Mm2 SINE B2 -27 168 1 1 1043 557 301 21 8 chr12 60080634 60080781 -61176749 + ID_B1 SINE B4 79 225 -67 1 1043 681 250 25 25 chr12 60080830 60081027 -61176503 + B3A SINE B2 2 198 0 1 1043 385 280 145 47 chr12 60081133 60081348 -61176182 + B4A SINE B4 78 275 -17 1 1043 292 190 0 49 chr12 60081403 60081464 -61176066 - PB1D9 SINE Alu -25 95 38 1 1043 923 266 79 4 chr12 60081699 60081952 -61175578 - B4 SINE B4 -18 274 3 1 1043 623 262 40 72 chr12 60082031 60082253 -61175277 - B3 SINE B2 0 216 2 2 1043 1802 197 44 57 chr12 60082469 60082852 -61174678 + ORR1C1 LTR MaLR 1 378 0 2 1043 613 266 91 24 chr12 60082943 60083151 -61174379 - B4 SINE B4 -69 223 2 2 1043 1241 56 0 7 chr12 60083179 60083314 -61174216 + B1_Mus1 SINE Alu 1 135 -13 2 1043 227 54 27 0 chr12 60083314 60083351 -61174179 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 2 1043 207 0 0 0 chr12 60083526 60083549 -61173981 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1043 945 185 138 0 chr12 60083781 60083970 -61173560 + B3 SINE B2 1 215 -1 2 1043 1435 231 82 48 chr12 60084447 60084736 -61172794 + L1M2 LINE L1 3796 4091 -2052 2 1043 1732 36 0 5 chr12 60084736 60084929 -61172601 + B2_Mm1a SINE B2 1 192 -1 2 1043 1435 231 82 48 chr12 60084929 60085102 -61172428 + L1M2 LINE L1 4092 4274 -1869 2 1043 594 279 65 32 chr12 60085132 60085317 -61172213 + B3A SINE B2 1 191 -7 2 1043 234 0 0 0 chr12 60085329 60085355 -61172175 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1043 370 217 91 36 chr12 60085366 60085476 -61172054 + ID_B1 SINE B4 109 224 0 2 1043 287 200 12 62 chr12 60085532 60085612 -61171918 + ID SINE ID 2 77 -147 2 1043 262 247 0 64 chr12 60085547 60085625 -61171905 + BC1_Mm scRNA scRNA 15 87 -65 2 1043 815 187 84 10 chr12 60085633 60085873 -61171657 + L1M2 LINE L1 4371 4655 -1488 2 1043 776 163 103 7 chr12 60085926 60086062 -61171468 + B1_Mur2 SINE Alu 1 149 0 2 1043 444 243 121 0 chr12 60087204 60087344 -61170186 + RSINE1 SINE B4 3 159 -6 2 1043 549 211 46 0 chr12 60087463 60087572 -61169958 + B1_Mur3 SINE Alu 15 128 -21 2 1043 1170 76 7 7 chr12 60087675 60087821 -61169709 - B1_Mm SINE Alu 0 147 2 2 1043 867 206 7 7 chr12 60088024 60088171 -61169359 - B1_Mus2 SINE Alu 0 147 1 2 1043 24 0 0 0 chr12 60088184 60088208 -61169322 + AT_rich Low_complexity Low_complexity 1 24 0 2 1043 1713 119 16 8 chr12 60088211 60088465 -61169065 - Lx4A LINE L1 0 7058 6803 2 1043 1040 135 15 25 chr12 60088465 60088663 -61168867 + Lx4A LINE L1 6039 6234 -824 2 1043 5328 32 2 2 chr12 60088732 60089319 -61168211 + LTRIS_Mus LTR ERV1 1 587 0 2 1043 558 255 0 64 chr12 60089604 60089627 -61167903 + ID_B1 SINE B4 64 224 0 2 1043 974 141 7 0 chr12 60089627 60089776 -61167754 + B1_Mur4 SINE Alu 1 150 0 2 1043 726 196 82 8 chr12 60089786 60089920 -61167610 + B1_Mus2 SINE Alu 2 145 -2 2 1043 241 330 97 0 chr12 60089985 60090088 -61167442 + PB1D10 SINE Alu 2 114 -3 2 1043 21 57 0 0 chr12 60090573 60090608 -61166922 + AT_rich Low_complexity Low_complexity 1 35 0 2 1043 307 303 98 8 chr12 60090619 60090752 -61166778 - RSINE1 SINE B4 -4 161 17 2 1043 378 276 157 104 chr12 60091197 60091274 -61166256 + L1MB8 LINE L1 5802 5887 -291 2 1043 1022 222 10 24 chr12 60091274 60091482 -61166048 + B3 SINE B2 1 205 -11 2 1043 378 276 157 104 chr12 60091482 60091760 -61165770 + L1MB8 LINE L1 5888 6176 -2 2 1043 1772 21 0 0 chr12 60092703 60092891 -61164639 + B2_Mm1t SINE B2 2 189 -4 2 1043 1441 58 0 82 chr12 60093402 60093609 -61163921 + B2_Mm2 SINE B2 3 192 -3 2 1043 1319 28 0 0 chr12 60093628 60093770 -61163760 + B1_Mm SINE Alu 1 142 -5 2 1043 1045 230 32 0 chr12 60093994 60094211 -61163319 + ID_B1 SINE B4 1 224 0 2 1043 280 202 94 51 chr12 60094664 60094794 -61162736 + B3 SINE B2 1 197 -19 2 1043 1066 80 51 0 chr12 60094914 60095052 -61162478 - B1_Mus1 SINE Alu -3 145 1 2 1043 1994 195 96 23 chr12 60095053 60095493 -61162037 + Lx9 LINE L1 6961 7432 -212 2 1043 263 268 42 48 chr12 60095579 60095744 -61161786 + L1_Mur3 LINE L1 3244 3407 -2473 2 1043 541 232 167 44 chr12 60095764 60096039 -61161491 + ORR1D2 LTR MaLR 1 309 -61 2 1043 2007 162 40 50 chr12 60096071 60096473 -61161057 + MTC LTR MaLR 1 398 -23 2 1043 334 193 10 111 chr12 60096451 60096550 -61160980 + PB1D9 SINE Alu 13 101 -19 2 1043 542 90 39 0 chr12 60096554 60096632 -61160898 - Lx9 LINE L1 -244 7400 7320 2 1043 251 54 0 26 chr12 60096698 60096736 -61160794 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 2 1043 270 242 0 31 chr12 60096875 60096939 -61160591 + MER21B LTR ERV1 238 299 -564 2 1043 1278 168 9 18 chr12 60096959 60097177 -61160353 + B3 SINE B2 1 216 0 2 1043 334 286 87 8 chr12 60097225 60097352 -61160178 + B3A SINE B2 47 183 -15 2 1043 346 286 138 52 chr12 60097347 60097579 -61159951 + MER21B LTR ERV1 300 551 -312 2 1043 1244 28 28 0 chr12 60097652 60097794 -61159736 + B1_Mus2 SINE Alu 1 146 -1 2 1043 331 239 0 15 chr12 60098423 60098491 -61159039 + ID2 SINE ID 6 72 -11 2 1043 227 299 0 38 chr12 60098424 60098504 -61159026 + B4 SINE B4 9 85 -207 2 1043 248 261 0 44 chr12 60098514 60098582 -61158948 + G-rich Low_complexity Low_complexity 1 65 0 2 1043 380 282 45 0 chr12 60098587 60098697 -61158833 + ID_B1 SINE B4 89 203 -21 2 1043 293 289 61 30 chr12 60098697 60098719 -61158811 + B1F SINE Alu 8 143 -6 2 1043 523 296 31 19 chr12 60099794 60099956 -61157574 + B3A SINE B2 1 164 -34 2 1043 333 0 0 0 chr12 60099956 60099993 -61157537 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1043 416 339 15 30 chr12 60100464 60100595 -61156935 + RSINE1 SINE B4 11 139 -26 2 1043 279 0 0 0 chr12 60100611 60100642 -61156888 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1043 1349 27 0 0 chr12 60101037 60101184 -61156346 + B1_Mus2 SINE Alu 1 147 0 2 1043 317 299 39 0 chr12 60101729 60101806 -61155724 + B1_Mur1 SINE Alu 31 110 -39 2 1043 1001 236 64 57 chr12 60102210 60102475 -61155055 + B4 SINE B4 20 286 -6 2 1043 576 240 56 43 chr12 60103249 60103410 -61154120 + RSINE1 SINE B4 3 165 0 2 1043 180 0 0 0 chr12 60103418 60103438 -61154092 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2 1043 354 292 38 0 chr12 60103478 60103584 -61153946 + PB1D10 SINE Alu 1 110 -7 2 1043 315 49 0 0 chr12 60103591 60103632 -61153898 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1043 530 252 0 9 chr12 60103637 60103749 -61153781 + PB1D9 SINE Alu 3 113 -7 2 1043 992 14 48 0 chr12 60103749 60103895 -61153635 + (CA)n Simple_repeat Simple_repeat 2 154 0 2 1043 408 253 21 0 chr12 60103981 60104076 -61153454 + ID_B1 SINE B4 114 210 -14 2 1043 24 67 0 0 chr12 60104078 60104123 -61153407 + AT_rich Low_complexity Low_complexity 1 45 0 2 1043 747 270 9 5 chr12 60104411 60104599 -61152931 - B3A SINE B2 -17 199 14 2 1043 489 202 185 0 chr12 60104790 60104909 -61152621 + B1_Mur1 SINE Alu 2 142 -7 2 1043 588 271 36 0 chr12 60104946 60105086 -61152444 - ID_B1 SINE B4 0 224 80 2 1043 366 162 39 51 chr12 60105705 60105783 -61151747 - B1_Mur4 SINE Alu 0 150 74 2 1043 263 317 91 7 chr12 60105809 60105952 -61151578 + RSINE1 SINE B4 5 159 -6 2 1043 1053 100 50 0 chr12 60105985 60106125 -61151405 + B1_Mus1 SINE Alu 2 148 0 2 1043 259 299 45 0 chr12 60106429 60106496 -61151034 - ID4_ SINE ID 0 83 14 2 1043 549 274 38 6 chr12 60106591 60106749 -61150781 + RSINE1 SINE B4 3 165 0 2 1043 443 252 87 22 chr12 60106856 60106994 -61150536 + B1F2 SINE Alu 2 148 -1 2 1043 579 150 20 20 chr12 60107368 60107470 -61150060 + PB1D9 SINE Alu 10 111 -9 2 1043 343 239 71 110 chr12 60107372 60107499 -61150031 + MT2B LTR ERVL 177 298 -303 2 1043 734 271 86 27 chr12 60107712 60107898 -61149632 - ID_B1 SINE B4 0 224 28 2 1043 421 215 159 0 chr12 60108333 60108440 -61149090 + RSINE1 SINE B4 3 126 -39 2 1043 549 108 21 0 chr12 60108560 60108653 -61148877 - L1Md_A LINE L1 0 6582 6488 2 1043 320 276 103 19 chr12 60108854 60108961 -61148569 - PB1D7 SINE Alu -2 118 3 2 1043 952 243 9 14 chr12 60109150 60109367 -61148163 + B3 SINE B2 1 216 0 2 1043 696 275 94 16 chr12 60109401 60109593 -61147937 + B3 SINE B2 3 209 -7 2 1043 28 0 0 0 chr12 60109601 60109629 -61147901 + AT_rich Low_complexity Low_complexity 1 28 0 2 1043 513 288 79 12 chr12 60109710 60109875 -61147655 + MLT1A0 LTR MaLR 121 296 -69 2 1043 444 279 36 9 chr12 60110087 60110199 -61147331 + PB1D7 SINE Alu 6 120 0 2 1043 321 305 196 15 chr12 60110199 60110219 -61147311 + B4A SINE B4 91 246 -46 2 1043 227 204 20 20 chr12 60110374 60110424 -61147106 + Charlie1b DNA MER1_type 455 504 -19 2 1043 696 193 263 0 chr12 60110556 60110727 -61146803 - B3 SINE B2 0 216 1 2 1043 510 204 77 10 chr12 60111102 60111206 -61146324 + PB1D9 SINE Alu 1 111 -9 2 1043 465 248 106 0 chr12 60111580 60111721 -61145809 - B3 SINE B2 0 216 61 2 1043 209 195 0 0 chr12 60111823 60111864 -61145666 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1043 284 146 0 0 chr12 60111869 60111917 -61145613 - B3 SINE B2 -168 48 1 2 1043 26 0 0 0 chr12 60112919 60112945 -61144585 + GC_rich Low_complexity Low_complexity 1 26 0 2 1043 249 302 0 0 chr12 60113599 60113662 -61143868 + RSINE1 SINE B4 68 130 -35 2 1043 261 0 0 0 chr12 60113761 60113790 -61143740 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1043 342 331 15 46 chr12 60113876 60114006 -61143524 + B1F SINE Alu 24 149 0 2 1043 21 0 0 0 chr12 60114161 60114182 -61143348 + AT_rich Low_complexity Low_complexity 1 21 0 2 1043 243 0 0 0 chr12 60115237 60115264 -61142266 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1043 1200 15 0 0 chr12 60115330 60115465 -61142065 + B1_Mus2 SINE Alu 1 135 -12 3 1043 243 0 0 0 chr12 60115466 60115493 -61142037 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1043 197 299 130 54 chr12 60115671 60115763 -61141767 - L2b LINE L2 0 3375 3277 3 1043 579 243 14 28 chr12 60115764 60115908 -61141622 + ID_B1 SINE B4 80 221 -3 3 1043 910 215 103 0 chr12 60116031 60116226 -61141304 + B3 SINE B2 2 216 0 3 1043 332 262 0 0 chr12 60116293 60116377 -61141153 + B1_Mur2 SINE Alu 66 149 0 3 1043 935 135 30 24 chr12 60116678 60116845 -61140685 - B2_Mm2 SINE B2 -24 171 4 3 1043 2931 46 3 0 chr12 60116972 60117317 -61140213 - ORR1A0 LTR MaLR 0 346 1 3 1043 684 185 7 37 chr12 60117460 60117595 -61139935 + B1_Mur4 SINE Alu 1 131 -19 3 1043 463 239 138 0 chr12 60118388 60118518 -61139012 - B1_Mur1 SINE Alu 0 149 2 3 1043 499 191 0 0 chr12 60119282 60119376 -61138154 + PB1D9 SINE Alu 27 120 0 3 1043 965 117 147 0 chr12 60119979 60120142 -61137388 - B2_Mm1t SINE B2 -5 188 2 3 1043 574 109 14 196 chr12 60120175 60120323 -61137207 - B1F2 SINE Alu 0 149 29 3 1043 247 212 112 0 chr12 60120426 60120506 -61137024 - ID_B1 SINE B4 -10 214 126 3 1043 329 219 237 79 chr12 60120619 60120758 -61136772 + RSINE1 SINE B4 5 165 0 3 1043 249 131 130 116 chr12 60120783 60120852 -61136678 - PB1D7 SINE Alu -50 70 1 3 1043 24 0 0 0 chr12 60120861 60120885 -61136645 + AT_rich Low_complexity Low_complexity 1 24 0 3 1043 505 244 103 7 chr12 60121022 60121158 -61136372 - B3A SINE B2 -47 151 3 3 1043 222 338 14 0 chr12 60121192 60121266 -61136264 - ID SINE ID -148 76 2 3 1043 312 287 0 85 chr12 60121823 60121964 -61135566 + MT2B LTR ERVL 136 264 -337 3 1043 508 168 149 9 chr12 60121865 60121979 -61135551 + B1_Mur2 SINE Alu 13 142 -7 3 1043 607 219 20 7 chr12 60122277 60122424 -61135106 + B1F SINE Alu 1 149 0 3 1043 200 271 0 0 chr12 60122591 60122639 -61134891 + CT-rich Low_complexity Low_complexity 4 51 0 3 1043 1332 87 22 0 chr12 60122820 60123005 -61134525 - B2_Mm2 SINE B2 -6 189 1 3 1043 2840 68 193 2 chr12 60123111 60123510 -61134020 - MT2C_Mm LTR ERVL 0 475 1 3 1043 353 319 63 28 chr12 60123567 60123709 -61133821 + ID_B1 SINE B4 77 223 -1 3 1043 947 90 113 0 chr12 60123711 60123844 -61133686 + B1_Mus1 SINE Alu 1 148 0 3 1043 471 214 27 67 chr12 60124225 60124375 -61133155 + B1F1 SINE Alu 4 147 -2 3 1043 1723 26 0 0 chr12 60124554 60124746 -61132784 + B2_Mm1a SINE B2 2 193 0 3 1043 697 204 24 15 chr12 60124874 60125056 -61132474 - B3 SINE B2 -7 188 1 3 1043 216 0 0 0 chr12 60125068 60125092 -61132438 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1043 296 291 48 10 chr12 60125237 60125341 -61132189 - PB1D10 SINE Alu -8 109 2 3 1043 398 184 81 0 chr12 60125380 60125467 -61132063 + PB1D9 SINE Alu 23 116 -4 3 1043 445 154 26 0 chr12 60125507 60125585 -61131945 + PB1D9 SINE Alu 34 113 -7 3 1043 842 108 0 0 chr12 60125596 60125716 -61131814 + B2_Mm2 SINE B2 1 120 -75 3 1043 274 314 37 37 chr12 60126244 60126353 -61131177 + PB1D10 SINE Alu 1 109 -8 3 1043 401 196 133 29 chr12 60126361 60126466 -61131064 + PB1D9 SINE Alu 2 117 -3 3 1043 1213 61 0 0 chr12 60126914 60127061 -61130469 + B1_Mus2 SINE Alu 1 147 0 3 1043 472 296 72 14 chr12 60127214 60127423 -61130107 + ID_B1 SINE B4 4 224 0 3 1043 244 297 0 0 chr12 60127475 60127539 -61129991 + Lx9 LINE L1 7399 7462 -182 3 1043 180 77 0 0 chr12 60127544 60127570 -61129960 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 1043 312 94 0 0 chr12 60127572 60127625 -61129905 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 3 1043 24 0 0 0 chr12 60127710 60127734 -61129796 + AT_rich Low_complexity Low_complexity 1 24 0 3 1043 201 74 0 0 chr12 60127773 60127800 -61129730 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3 1043 270 278 172 70 chr12 60128390 60128576 -61128954 - MIR SINE MIR -36 226 22 3 1043 1108 52 0 0 chr12 60129027 60129163 -61128367 - B1_Mus1 SINE Alu -12 136 1 3 1043 221 232 0 97 chr12 60129539 60129601 -61127929 + B1_Mur1 SINE Alu 89 144 -5 3 1043 469 278 111 0 chr12 60129606 60129786 -61127744 + B3 SINE B2 2 201 -15 3 1043 287 323 68 15 chr12 60130072 60130204 -61127326 - B1F1 SINE Alu 0 149 11 3 1043 565 250 92 69 chr12 60130250 60130482 -61127048 - RLTR15 LTR ERVK -16 343 105 3 1043 312 27 0 0 chr12 60130482 60130519 -61127011 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1043 565 250 92 69 chr12 60130519 60130621 -61126909 - RLTR15 LTR ERVK -255 104 1 3 1043 1031 88 7 0 chr12 60130940 60131088 -61126442 + B2_Mm1t SINE B2 2 150 -43 3 1043 287 104 0 20 chr12 60131117 60131166 -61126364 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 3 1043 1014 61 45 0 chr12 60131181 60131313 -61126217 + B1_Mus1 SINE Alu 5 142 -6 3 1043 1065 177 134 100 chr12 60131343 60131590 -61125940 + ORR1C1 LTR MaLR 16 286 -92 3 1043 1356 87 38 0 chr12 60131590 60131774 -61125756 + B2_Mm2 SINE B2 1 191 -4 3 1043 1065 177 134 100 chr12 60131774 60131877 -61125653 + ORR1C1 LTR MaLR 287 378 0 3 1043 504 236 136 20 chr12 60132035 60132156 -61125374 - RSINE1 SINE B4 0 165 25 3 1043 1305 197 147 27 chr12 60132156 60132490 -61125040 + ORR1D1 LTR MaLR 1 374 0 3 1043 504 236 136 20 chr12 60132490 60132515 -61125015 - RSINE1 SINE B4 -141 24 2 3 1043 520 133 64 86 chr12 60132840 60132934 -61124596 - MTC-int LTR MaLR -43 1215 1120 3 1043 649 164 28 50 chr12 60132934 60133075 -61124455 + B1_Mur3 SINE Alu 1 138 -11 3 1043 261 0 0 0 chr12 60133075 60133104 -61124426 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1043 520 133 64 86 chr12 60133104 60133148 -61124382 - MTC-int LTR MaLR -139 1119 1080 3 1043 261 0 0 0 chr12 60133159 60133188 -61124342 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1043 401 50 0 62 chr12 60133188 60133245 -61124285 + B1_Mus1 SINE Alu 8 61 -87 3 1043 344 123 18 0 chr12 60133247 60133304 -61124226 + B2_Mm1t SINE B2 92 149 -44 3 1043 255 105 369 59 chr12 60133308 60133411 -61124119 + B2_Mm2 SINE B2 57 191 -4 3 1043 365 202 90 0 chr12 60133434 60133523 -61124007 - MTC LTR MaLR -295 126 30 3 1043 309 323 0 0 chr12 60133525 60133618 -61123912 - B1F SINE Alu -56 93 1 3 1043 342 223 181 47 chr12 60133644 60133771 -61123759 - ID_B1 SINE B4 0 224 81 3 1043 373 260 83 0 chr12 60133780 60133876 -61123654 - PB1D10 SINE Alu -1 116 13 3 1043 1358 262 174 11 chr12 60133890 60134358 -61123172 + MTE-int LTR MaLR 933 1476 -104 3 1043 302 149 15 15 chr12 60134358 60134426 -61123104 - Lx2A LINE L1 -2 7006 6939 3 1043 1358 262 174 11 chr12 60134426 60134486 -61123044 + MTE-int LTR MaLR 1477 1549 -31 3 1043 1076 88 0 0 chr12 60134486 60134623 -61122907 + B1_Mus1 SINE Alu 2 138 -10 3 1043 1358 262 174 11 chr12 60134623 60134649 -61122881 + MTE-int LTR MaLR 1550 1578 -2 3 1043 192 97 0 0 chr12 60134651 60134682 -61122848 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 3 1043 324 64 0 0 chr12 60134706 60134753 -61122777 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1043 1120 51 0 0 chr12 60134753 60134890 -61122640 - B1_Mus2 SINE Alu -9 138 2 3 1043 244 241 0 0 chr12 60134904 60134958 -61122572 + MTEb LTR MaLR 3 56 -323 3 1043 233 213 82 0 chr12 60134958 60135019 -61122511 - L1M3 LINE L1 -290 5893 5828 3 1043 489 256 118 12 chr12 60135050 60135220 -61122310 - ID_B1 SINE B4 -36 188 1 3 1043 1053 69 7 33 chr12 60135405 60135418 -61122112 - B1_Mm SINE Alu -1 146 138 3 1043 216 0 0 0 chr12 60135418 60135442 -61122088 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1043 1053 69 7 33 chr12 60135442 60135578 -61121952 - B1_Mm SINE Alu -10 137 1 3 1043 518 156 31 0 chr12 60135958 60136054 -61121476 - B2_Mm2 SINE B2 -10 185 87 3 1043 510 152 33 0 chr12 60136057 60136149 -61121381 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136152 60136244 -61121286 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136247 60136339 -61121191 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136342 60136434 -61121096 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136437 60136529 -61121001 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136532 60136624 -61120906 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136627 60136719 -61120811 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136722 60136814 -61120716 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136817 60136909 -61120621 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60136912 60137004 -61120526 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137007 60137099 -61120431 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137102 60137194 -61120336 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137197 60137289 -61120241 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137292 60137384 -61120146 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137387 60137479 -61120051 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137482 60137574 -61119956 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137577 60137669 -61119861 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137672 60137764 -61119766 - B2_Mm2 SINE B2 -14 181 87 3 1043 510 152 33 0 chr12 60137767 60137859 -61119671 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60137862 60137954 -61119576 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60137957 60138049 -61119481 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138052 60138144 -61119386 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138147 60138239 -61119291 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138242 60138334 -61119196 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138337 60138429 -61119101 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138432 60138524 -61119006 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138527 60138619 -61118911 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138622 60138714 -61118816 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138717 60138809 -61118721 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138812 60138904 -61118626 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60138907 60138999 -61118531 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139002 60139094 -61118436 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139097 60139189 -61118341 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139192 60139284 -61118246 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139287 60139379 -61118151 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139382 60139474 -61118056 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139477 60139569 -61117961 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139572 60139664 -61117866 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139667 60139759 -61117771 - B2_Mm2 SINE B2 -14 181 87 4 1043 514 152 33 0 chr12 60139762 60139854 -61117676 - B2_Mm2 SINE B2 -14 181 87 4 1043 510 152 33 0 chr12 60139857 60139949 -61117581 - B2_Mm2 SINE B2 -14 181 87 4 1043 534 141 33 0 chr12 60139952 60140044 -61117486 - B2_Mm2 SINE B2 -14 181 87 4 1043 919 128 20 0 chr12 60140047 60140195 -61117335 - B2_Mm2 SINE B2 -14 181 31 4 1043 1220 101 15 36 chr12 60140195 60140390 -61117140 - B2_Mm1t SINE B2 -1 192 2 4 1043 670 72 14 3 chr12 60140417 60140524 -61117006 + B1_Mus1 SINE Alu 4 117 0 4 1043 271 198 188 0 chr12 60140525 60140621 -61116909 + Lx9 LINE L1 7531 7644 0 4 1043 1527 70 0 0 chr12 60141321 60141508 -61116022 + U2 snRNA snRNA 1 187 -1 4 1043 424 227 118 1 chr12 60141800 60141991 -61115539 + L1M3 LINE L1 5277 5488 -685 4 1043 660 97 137 59 chr12 60142161 60142314 -61115216 - L1_Mus3 LINE L1 -1 6637 6473 4 1043 248 220 310 0 chr12 60142329 60142429 -61115101 + B3A SINE B2 2 132 -66 4 1043 575 269 38 19 chr12 60142566 60142725 -61114805 - ID_B1 SINE B4 -53 171 10 4 1043 243 264 94 9 chr12 60142737 60142856 -61114674 - L1M4 LINE L1 -1120 5020 4893 4 1043 1873 174 78 5 chr12 60142856 60143242 -61114288 + MTD LTR MaLR 1 414 -5 4 1043 404 300 45 7 chr12 60143506 60143697 -61113833 + L1P5 LINE L1 5322 5522 -634 4 1043 633 200 44 7 chr12 60143773 60143909 -61113621 + B3A SINE B2 1 141 -57 4 1043 333 0 0 0 chr12 60143953 60143990 -61113540 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1043 188 135 27 0 chr12 60144868 60144905 -61112625 + CT-rich Low_complexity Low_complexity 2 39 0 4 1043 394 181 43 103 chr12 60144906 60145023 -61112507 - PB1D9 SINE Alu -8 112 3 4 1043 395 255 13 72 chr12 60145488 60145506 -61112024 + ID_B1 SINE B4 82 224 0 4 1043 779 157 15 0 chr12 60145506 60145640 -61111890 + B1_Mur2 SINE Alu 14 149 0 4 1043 327 205 53 42 chr12 60145664 60145766 -61111764 + PB1 SINE Alu 9 102 -47 4 1043 352 301 15 0 chr12 60146029 60146138 -61111392 - B1F2 SINE Alu -7 113 1 4 1043 841 184 119 0 chr12 60146162 60146363 -61111167 + RMER4B LTR ERVK 17 241 -344 4 1043 198 71 0 0 chr12 60146397 60146425 -61111105 + (CTG)n Simple_repeat Simple_repeat 1 28 0 4 1043 441 231 55 69 chr12 60146447 60146661 -61110869 + RMER4B LTR ERVK 332 576 -9 4 1043 388 91 30 0 chr12 60146733 60146799 -61110731 + B1_Mur4 SINE Alu 83 150 0 4 1043 290 304 13 0 chr12 60146836 60146915 -61110615 + B1F SINE Alu 20 99 -50 4 1043 211 250 150 0 chr12 60146887 60146947 -61110583 - B3A SINE B2 -129 69 1 4 1043 225 65 0 0 chr12 60147110 60147141 -61110389 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1043 1339 54 22 0 chr12 60147141 60147325 -61110205 + B2_Mm1t SINE B2 3 190 -3 4 1043 796 164 13 46 chr12 60147659 60147812 -61109718 + B1_Mur1 SINE Alu 2 149 0 4 1043 256 228 181 48 chr12 60148289 60148372 -61109158 + B3 SINE B2 1 94 -122 4 1043 22 0 0 0 chr12 60148441 60148463 -61109067 + AT_rich Low_complexity Low_complexity 1 22 0 4 1043 1096 92 69 75 chr12 60148515 60148703 -61108827 + B2_Mm2 SINE B2 1 187 -8 4 1043 1542 44 11 0 chr12 60148713 60148896 -61108634 + B2_Mm1a SINE B2 1 185 -8 4 1043 1113 61 137 24 chr12 60149417 60149585 -61107945 - B2_Mm2 SINE B2 -6 189 3 4 1043 522 263 51 23 chr12 60149623 60149798 -61107732 - B3A SINE B2 -16 182 3 4 1043 875 28 0 0 chr12 60150320 60150429 -61107101 - B2_Mm2 SINE B2 -85 110 2 4 1043 540 282 46 36 chr12 60150433 60150628 -61106902 - B3A SINE B2 -1 197 1 4 1043 416 295 26 17 chr12 60150808 60150986 -61106544 + B3A SINE B2 8 184 -9 4 1043 264 280 107 40 chr12 60151009 60151158 -61106372 + RSINE1 SINE B4 3 161 -4 4 1043 478 286 53 0 chr12 60151669 60151802 -61105728 + B1F SINE Alu 10 149 0 4 1043 824 154 14 20 chr12 60151909 60152055 -61105475 + B1_Mur4 SINE Alu 6 150 0 4 1043 22 35 0 0 chr12 60152172 60152201 -61105329 + AT_rich Low_complexity Low_complexity 1 29 0 4 1043 233 306 53 18 chr12 60152247 60152360 -61105170 + PB1D10 SINE Alu 1 117 0 4 1043 183 80 0 0 chr12 60152700 60152725 -61104805 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 4 1043 241 263 0 0 chr12 60152789 60152846 -61104684 + RSINE1 SINE B4 2 58 -107 4 1043 244 276 24 106 chr12 60152876 60152961 -61104569 - RSINE1 SINE B4 -28 137 60 4 1043 596 259 20 20 chr12 60153015 60153165 -61104365 - RSINE1 SINE B4 -4 161 12 4 1043 636 296 93 13 chr12 60153226 60153452 -61104078 + Lx8 LINE L1 6172 6415 -1058 4 1043 933 268 51 0 chr12 60153493 60153747 -61103783 + Lx9 LINE L1 6658 6924 -720 4 1043 804 132 0 0 chr12 60153748 60153877 -61103653 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 4 1043 1257 34 0 0 chr12 60153877 60154024 -61103506 - B1_Mus2 SINE Alu 0 147 1 4 1043 1814 250 99 61 chr12 60154024 60154623 -61102907 + Lx9 LINE L1 6910 7555 -89 4 1043 471 84 0 0 chr12 60154623 60154694 -61102836 + L1_Mus2 LINE L1 6494 6564 -2 4 1043 1814 250 99 61 chr12 60154694 60154802 -61102728 + Lx9 LINE L1 7556 7644 0 4 1043 1158 154 81 38 chr12 60154971 60155316 -61102214 - RMER10A LTR ERVL -2 440 81 4 1043 507 249 156 11 chr12 60155316 60155495 -61102035 + L1M2 LINE L1 4684 4888 -1255 4 1043 253 254 59 15 chr12 60155553 60155621 -61101909 + B1F1 SINE Alu 2 72 -77 4 1043 399 288 53 120 chr12 60155664 60155871 -61101659 + L1M2 LINE L1 4914 5107 -1036 4 1043 1184 54 0 0 chr12 60155871 60156018 -61101512 + B1_Mus2 SINE Alu 1 147 0 4 1043 399 288 53 120 chr12 60156018 60156172 -61101358 + L1M2 LINE L1 5108 5251 -892 4 1043 2879 134 49 20 chr12 60156172 60156681 -61100849 - RLTR28 LTR ERVL 0 524 1 4 1043 399 288 53 120 chr12 60156681 60156717 -61100813 + L1M2 LINE L1 5252 5284 -859 4 1043 301 275 11 7 chr12 60156729 60156834 -61100696 + Lx8 LINE L1 6722 6822 -874 4 1043 1167 51 0 0 chr12 60156966 60157104 -61100426 - B1_Mus2 SINE Alu -9 138 1 4 1043 542 234 87 15 chr12 60157107 60157302 -61100228 + LTRIS4 LTR ERV1 299 507 0 4 1043 522 311 18 23 chr12 60157302 60157519 -61100011 + Lx8 LINE L1 6799 7014 -459 4 1043 328 230 39 51 chr12 60157561 60157639 -61099891 + Lx9 LINE L1 5848 5924 -1720 4 1043 2414 153 18 8 chr12 60157632 60158033 -61099497 + Lx9 LINE L1 6958 7362 -282 4 1043 734 260 136 35 chr12 60158097 60158340 -61099190 - MTD LTR MaLR -23 396 120 4 1043 1093 92 0 0 chr12 60158340 60158482 -61099048 + B1_Mus1 SINE Alu 1 142 -6 4 1043 734 260 136 35 chr12 60158482 60158577 -61098953 - MTD LTR MaLR -300 119 24 4 1043 400 267 85 17 chr12 60158589 60158707 -61098823 + RSINE1 SINE B4 20 145 -20 4 1043 327 25 0 0 chr12 60158807 60158847 -61098683 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1043 893 196 23 0 chr12 60158850 60159023 -61098507 + B3 SINE B2 8 184 -32 4 1043 1214 79 78 11 chr12 60159203 60159221 -61098309 - B2_Mm1a SINE B2 -1 192 175 4 1043 189 0 0 0 chr12 60159221 60159242 -61098288 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 4 1043 1214 79 78 11 chr12 60159242 60159402 -61098128 - B2_Mm1a SINE B2 -19 174 3 4 1043 247 254 17 0 chr12 60159480 60159539 -61097991 + CT-rich Low_complexity Low_complexity 4 63 0 4 1043 881 236 41 5 chr12 60159612 60159808 -61097722 + B3 SINE B2 1 203 -13 4 1043 379 254 82 66 chr12 60159868 60159990 -61097540 + RSINE1 SINE B4 5 128 -37 4 1043 576 186 53 23 chr12 60160572 60160704 -61096826 + B1_Mur1 SINE Alu 3 138 -11 4 1043 1266 82 32 27 chr12 60160875 60161063 -61096467 + B2_Mm2 SINE B2 1 189 -6 4 1043 1056 203 9 23 chr12 60161274 60161491 -61096039 + B3 SINE B2 3 216 0 4 1044 394 302 0 9 chr12 60162603 60162710 -61094820 + PB1D7 SINE Alu 1 106 -14 4 1044 282 105 105 0 chr12 60162712 60162826 -61094704 + (TA)n Simple_repeat Simple_repeat 2 127 0 4 1044 21 0 0 0 chr12 60162828 60162849 -61094681 + AT_rich Low_complexity Low_complexity 1 21 0 4 1044 441 162 3 0 chr12 60162853 60162937 -61094593 + B1_Mus2 SINE Alu 1 86 -64 4 1044 296 202 39 87 chr12 60162862 60162965 -61094565 + B4 SINE B4 94 191 -101 5 1044 234 300 88 0 chr12 60162934 60163014 -61094516 - B1_Mus2 SINE Alu -60 87 1 5 1044 347 138 17 0 chr12 60163235 60163293 -61094237 + B1_Mur3 SINE Alu 44 102 -47 5 1044 991 116 0 45 chr12 60163303 60163319 -61094211 - B1_Mus1 SINE Alu 0 148 138 5 1044 198 0 0 0 chr12 60163319 60163341 -61094189 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 5 1044 991 116 0 45 chr12 60163341 60163478 -61094052 - B1_Mus1 SINE Alu -11 137 2 5 1044 234 0 0 0 chr12 60163497 60163523 -61094007 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 5 1044 879 43 9 0 chr12 60163525 60163640 -61093890 - B1_Mus2 SINE Alu -6 141 26 5 1044 251 180 0 0 chr12 60163639 60163689 -61093841 + B1_Mur4 SINE Alu 98 147 -3 5 1044 1095 76 10 115 chr12 60163711 60163841 -61093689 - B2_Mm1t SINE B2 -7 186 78 5 1044 282 29 0 0 chr12 60163841 60163876 -61093654 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1044 853 51 169 0 chr12 60163876 60163994 -61093536 - B1_Mus2 SINE Alu -9 138 1 5 1044 1095 76 10 115 chr12 60163994 60164070 -61093460 - B2_Mm1t SINE B2 -116 77 2 5 1044 295 337 11 0 chr12 60164165 60164254 -61093276 - ID_B1 SINE B4 -46 178 89 5 1044 1432 240 71 3 chr12 60164628 60164979 -61092551 + MTEa LTR MaLR 1 375 -4 5 1044 772 152 172 0 chr12 60165201 60165352 -61092178 - URR1B DNA MER1_type 0 225 49 5 1044 912 52 44 0 chr12 60165448 60165584 -61091946 + (GAAA)n Simple_repeat Simple_repeat 1 142 0 5 1044 811 280 9 23 chr12 60165902 60166121 -61091409 - B3 SINE B2 0 216 1 5 1044 279 0 0 0 chr12 60166142 60166173 -61091357 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1044 603 201 62 49 chr12 60166210 60166372 -61091158 + B3 SINE B2 53 216 0 5 1044 185 163 47 0 chr12 60166548 60166591 -61090939 + CT-rich Low_complexity Low_complexity 1 45 0 5 1044 418 146 248 19 chr12 60166619 60166724 -61090806 - B1_Mus1 SINE Alu -8 140 12 5 1044 212 279 43 29 chr12 60166664 60166734 -61090796 - B4 SINE B4 -141 151 81 5 1044 805 146 13 0 chr12 60166734 60166885 -61090645 + CT-rich Low_complexity Low_complexity 2 154 0 5 1044 257 189 0 42 chr12 60166888 60166960 -61090570 - B1_Mus2 SINE Alu 0 147 79 5 1044 211 111 28 0 chr12 60167917 60167953 -61089577 + (CGCGG)n Simple_repeat Simple_repeat 5 41 0 5 1044 754 40 0 74 chr12 60168923 60169031 -61088499 + B1_Mm SINE Alu 35 134 -13 5 1044 267 297 40 0 chr12 60170283 60170357 -61087173 - B4A SINE B4 -142 150 74 5 1044 298 333 22 0 chr12 60170358 60170448 -61087082 - B3 SINE B2 0 216 125 5 1044 192 77 0 0 chr12 60170471 60170497 -61087033 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1044 1244 36 0 0 chr12 60170500 60170639 -61086891 - B1_Mus2 SINE Alu -8 139 1 5 1044 526 266 88 8 chr12 60170678 60170803 -61086727 + B4 SINE B4 22 156 -136 5 1044 1516 60 16 21 chr12 60171733 60171921 -61085609 + B2_Mm2 SINE B2 1 187 -8 5 1044 278 318 7 26 chr12 60172606 60172758 -61084772 + GA-rich Low_complexity Low_complexity 2 150 0 5 1044 327 202 0 0 chr12 60173050 60173139 -61084391 + (CCCCAG)n Simple_repeat Simple_repeat 4 92 0 5 1044 438 228 0 0 chr12 60173374 60173532 -61083998 + (CAG)n Simple_repeat Simple_repeat 2 159 0 5 1044 224 314 144 0 chr12 60175277 60175395 -61082135 - B3A SINE B2 -5 193 59 5 1044 279 291 12 12 chr12 60175591 60175671 -61081859 - ID4_ SINE ID -3 80 1 5 1044 204 40 0 0 chr12 60175873 60175898 -61081632 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1044 1303 47 0 0 chr12 60175898 60176046 -61081484 - B1_Mus1 SINE Alu 0 148 1 5 1044 472 240 180 29 chr12 60176464 60176636 -61080894 + B3A SINE B2 1 198 0 5 1044 371 333 72 33 chr12 60176651 60176803 -61080727 + ID_B1 SINE B4 1 158 -66 5 1044 180 0 0 0 chr12 60176955 60176975 -61080555 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1044 1209 44 0 0 chr12 60176975 60177110 -61080420 - B1_Mm SINE Alu -11 136 2 5 1044 832 156 82 0 chr12 60177216 60177351 -61080179 - B1_Mur4 SINE Alu 0 150 5 5 1044 2874 148 59 4 chr12 60177405 60177894 -61079636 - RMER20A LTR ERVK 0 516 1 5 1044 827 259 5 40 chr12 60178259 60178460 -61079070 + B3 SINE B2 1 194 -22 5 1044 362 133 0 104 chr12 60178468 60178535 -61078995 - ID_B1 SINE B4 -17 207 148 5 1044 183 42 0 0 chr12 60178539 60178563 -61078967 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1044 757 275 6 6 chr12 60178697 60178858 -61078672 - RSINE1 SINE B4 -3 162 2 5 1044 873 164 29 0 chr12 60179236 60179376 -61078154 - B1_Mus1 SINE Alu 0 148 5 5 1044 388 260 173 22 chr12 60179489 60179674 -61077856 + MLT1J1 LTR MaLR 4 216 -228 5 1044 1129 66 0 28 chr12 60179770 60179911 -61077619 + B1_Mus2 SINE Alu 2 138 -9 5 1044 1517 75 0 5 chr12 60179971 60180158 -61077372 - B2_Mm2 SINE B2 -8 187 2 5 1044 711 191 0 0 chr12 60180256 60180382 -61077148 - B1_Mur1 SINE Alu 0 149 24 5 1044 573 186 142 0 chr12 60180548 60180661 -61076869 + B1F SINE Alu 10 138 -11 5 1044 192 77 0 0 chr12 60180661 60180687 -61076843 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 5 1044 251 191 0 0 chr12 60180825 60180867 -61076663 + PB1D10 SINE Alu 32 73 -44 5 1044 812 201 105 30 chr12 60180917 60181117 -61076413 + ORR1D2 LTR MaLR 156 370 0 5 1044 441 0 0 0 chr12 60181189 60181238 -61076292 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 5 1044 1112 78 46 0 chr12 60181238 60181391 -61076139 - B2_Mm1t SINE B2 -33 160 1 5 1044 397 293 51 39 chr12 60181439 60181595 -61075935 - ID_B1 SINE B4 0 224 67 5 1044 216 308 36 63 chr12 60181609 60181720 -61075810 - PB1D10 SINE Alu -7 110 3 5 1044 476 237 162 7 chr12 60181767 60181903 -61075627 + B3A SINE B2 1 157 -41 5 1044 226 73 0 47 chr12 60183185 60183228 -61074302 + (TTCTC)n Simple_repeat Simple_repeat 5 45 0 5 1044 1309 28 0 0 chr12 60183244 60183389 -61074141 - B1_Mus2 SINE Alu -1 146 2 5 1044 620 204 26 0 chr12 60183938 60184051 -61073479 - B3 SINE B2 0 216 101 5 1044 398 169 13 25 chr12 60184055 60184134 -61073396 + B3 SINE B2 132 209 -7 5 1044 510 274 65 13 chr12 60184193 60184348 -61073182 + RSINE1 SINE B4 3 165 0 5 1044 355 355 44 19 chr12 60184450 60184608 -61072922 + LTR33 LTR ERVL 10 171 -344 5 1044 263 260 103 60 chr12 60184667 60184729 -61072801 + LTR33 LTR ERVL 322 390 -125 5 1044 1472 94 11 0 chr12 60184729 60184920 -61072610 - B2_Mm1t SINE B2 0 193 1 5 1044 263 260 103 60 chr12 60184920 60185041 -61072489 + LTR33 LTR ERVL 391 512 -3 5 1044 252 0 0 0 chr12 60185182 60185210 -61072320 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1044 1070 46 54 0 chr12 60185210 60185340 -61072190 - B1_Mus1 SINE Alu -10 138 2 5 1044 1159 90 14 0 chr12 60185945 60186090 -61071440 - B1_Mus1 SINE Alu -1 147 1 5 1044 578 165 216 32 chr12 60186578 60186703 -61070827 - B1_Mus1 SINE Alu 0 148 1 5 1044 455 243 104 117 chr12 60186742 60186905 -61070625 - RSINE1 SINE B4 0 165 5 5 1044 1250 211 224 42 chr12 60186937 60187052 -61070478 + RMER6C LTR ERVK 10 181 -509 5 1044 1232 29 0 0 chr12 60187052 60187188 -61070342 + B1_Mus1 SINE Alu 5 140 -8 5 1044 257 0 30 0 chr12 60187188 60187221 -61070309 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1044 1250 222 195 49 chr12 60187221 60187758 -61069772 + RMER6C LTR ERVK 180 717 -39 5 1044 358 276 132 9 chr12 60187832 60187938 -61069592 - RSINE1 SINE B4 -7 158 40 5 1044 421 240 152 65 chr12 60187973 60188111 -61069419 - RSINE1 SINE B4 -12 153 4 5 1044 227 103 26 0 chr12 60188243 60188282 -61069248 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 5 1044 772 120 17 0 chr12 60188282 60188399 -61069131 - B1_Mur4 SINE Alu -1 149 31 5 1044 255 286 0 0 chr12 60188445 60188494 -61069036 - B3A SINE B2 -119 79 31 5 1044 615 118 42 0 chr12 60188505 60188624 -61068906 + CT-rich Low_complexity Low_complexity 3 126 0 5 1044 371 243 164 10 chr12 60188627 60188731 -61068799 - B1_Mur1 SINE Alu -7 142 23 5 1044 29148 68 34 7 chr12 60188778 60190073 -61067457 - L1_Mus2 LINE L1 -1 6565 5001 5 1044 558 0 0 0 chr12 60190073 60190135 -61067395 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 5 1044 1126 66 29 0 chr12 60190136 60190272 -61067258 - B1_Mm SINE Alu -6 141 2 5 1044 29148 93 68 25 chr12 60190272 60193283 -61064247 - L1_Mus2 LINE L1 -883 5000 2038 5 1044 1532 84 5 0 chr12 60193283 60193473 -61064057 - B2_Mm1t SINE B2 -1 192 2 5 1044 29148 95 63 26 chr12 60193473 60194372 -61063158 - L1_Mus2 LINE L1 -3846 2037 1145 5 1044 441 0 0 0 chr12 60194445 60194494 -61063036 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1044 444 19 0 0 chr12 60196157 60196210 -61061320 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1044 460 298 16 24 chr12 60196215 60196342 -61061188 - RSINE1 SINE B4 -37 128 3 5 1044 30 45 0 0 chr12 60197073 60197117 -61060413 + AT_rich Low_complexity Low_complexity 1 44 0 5 1044 396 0 0 0 chr12 60197216 60197260 -61060270 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1044 861 241 16 159 chr12 60197570 60197822 -61059708 - B3 SINE B2 0 216 1 5 1044 369 210 49 12 chr12 60197884 60197966 -61059564 + PB1D9 SINE Alu 34 118 -2 5 1044 873 241 42 24 chr12 60198114 60198326 -61059204 - B3 SINE B2 0 216 1 5 1044 203 79 0 26 chr12 60198332 60198371 -61059159 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1044 1271 48 0 20 chr12 60198372 60198521 -61059009 - B1_Mus1 SINE Alu -1 147 2 5 1044 1137 111 0 0 chr12 60198557 60198729 -61058801 + (TTCC)n Simple_repeat Simple_repeat 4 175 0 5 1044 482 169 24 0 chr12 60198762 60198845 -61058685 - B1_Mur4 SINE Alu -52 98 14 5 1044 22 35 0 0 chr12 60198911 60198940 -61058590 + AT_rich Low_complexity Low_complexity 1 29 0 5 1044 29 70 0 0 chr12 60199045 60199102 -61058428 + AT_rich Low_complexity Low_complexity 1 57 0 6 1044 668 105 11 0 chr12 60199132 60199227 -61058303 - B1_Mus1 SINE Alu -20 128 33 6 1044 688 248 0 21 chr12 60199228 60199368 -61058162 - B3 SINE B2 -15 201 65 6 1044 629 212 77 11 chr12 60199368 60199549 -61057981 - Lx8 LINE L1 -241 7232 7040 6 1044 1548 68 5 30 chr12 60199946 60200143 -61057387 - B2_Mm1t SINE B2 0 193 2 6 1044 343 66 33 0 chr12 60200188 60200249 -61057281 + B2_Mm1t SINE B2 127 189 -4 6 1044 914 244 48 10 chr12 60200753 60200960 -61056570 + B3 SINE B2 1 215 -1 6 1044 606 210 0 32 chr12 60200999 60201122 -61056408 + RSINE1 SINE B4 3 121 -44 6 1044 351 0 0 0 chr12 60201138 60201177 -61056353 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1044 290 26 26 0 chr12 60201203 60201242 -61056288 + B2_Mm2 SINE B2 1 40 -155 6 1044 799 71 80 0 chr12 60201243 60201356 -61056174 + B1_Mm SINE Alu 2 123 -24 6 1044 608 115 0 10 chr12 60201356 60201453 -61056077 + B2_Mm2 SINE B2 93 188 -7 6 1044 1503 68 5 59 chr12 60201571 60201775 -61055755 - B2_Mm1t SINE B2 0 193 1 6 1044 1144 88 101 0 chr12 60201775 60201934 -61055596 - B2_Mm1t SINE B2 -16 177 3 6 1044 1167 97 7 0 chr12 60201941 60202086 -61055444 - B1_Mus1 SINE Alu -1 147 2 6 1044 273 232 71 14 chr12 60202165 60202235 -61055295 - PB1D7 SINE Alu -46 74 1 6 1044 420 261 0 11 chr12 60202298 60202387 -61055143 + PB1D10 SINE Alu 10 97 -20 6 1044 266 197 243 3 chr12 60202711 60202794 -61054736 + B1_Mur1 SINE Alu 9 106 -43 6 1044 335 302 72 48 chr12 60203378 60203456 -61054074 - ID_B1 SINE B4 -7 217 135 6 1044 3242 64 5 8 chr12 60203456 60203851 -61053679 - MTA_Mm LTR MaLR -2 394 1 6 1044 335 302 72 48 chr12 60203851 60203897 -61053633 - ID_B1 SINE B4 -90 134 90 6 1044 725 236 197 0 chr12 60204791 60204969 -61052561 + B3 SINE B2 2 214 -2 6 1044 996 149 0 7 chr12 60204979 60205121 -61052409 + B1_Mur4 SINE Alu 2 142 -8 6 1044 450 0 0 0 chr12 60205122 60205172 -61052358 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1044 225 297 149 0 chr12 60205234 60205308 -61052222 - ID SINE ID -139 85 1 6 1044 243 288 53 27 chr12 60205774 60205849 -61051681 + MIR SINE MIR 8 84 -178 6 1044 1301 196 5 0 chr12 60206095 60206299 -61051231 - B3 SINE B2 -9 207 3 6 1044 327 242 114 24 chr12 60206767 60206890 -61050640 - RSINE1 SINE B4 -28 137 4 6 1044 206 417 67 19 chr12 60207088 60207296 -61050234 + L2b LINE L2 2910 3127 -248 6 1044 1329 153 18 26 chr12 60207337 60207565 -61049965 - URR1A DNA MER1_type 0 226 1 6 1044 227 341 12 12 chr12 60207597 60207680 -61049850 - B4 SINE B4 -209 83 1 6 1044 284 224 0 15 chr12 60207805 60207873 -61049657 + PB1D10 SINE Alu 51 117 0 6 1044 256 275 65 56 chr12 60207992 60208100 -61049430 - MLT1A0 LTR MaLR -252 113 5 6 1044 378 324 9 0 chr12 60208436 60208453 -61049077 - PB1D10 SINE Alu -5 112 96 6 1044 480 268 188 11 chr12 60208453 60208634 -61048896 - B3 SINE B2 -1 215 3 6 1044 378 324 9 0 chr12 60208634 60208727 -61048803 - PB1D10 SINE Alu -22 95 2 6 1044 405 0 0 0 chr12 60208768 60208813 -61048717 + (TTA)n Simple_repeat Simple_repeat 2 46 0 6 1044 862 256 58 22 chr12 60210123 60210398 -61047132 + B4A SINE B4 8 292 0 6 1044 642 184 0 0 chr12 60210707 60210832 -61046698 + (TA)n Simple_repeat Simple_repeat 2 126 0 6 1044 1335 93 23 0 chr12 60210833 60211005 -61046525 - B2_Mm1t SINE B2 -16 177 2 6 1044 1461 82 16 0 chr12 60211015 60211197 -61046333 - B2_Mm2 SINE B2 -9 186 2 6 1044 232 231 37 46 chr12 60211228 60211337 -61046193 - HAL1 LINE L1 -150 2357 2250 6 1044 529 235 17 9 chr12 60211448 60211564 -61045966 - PB1D10 SINE Alu 0 117 1 6 1044 716 267 83 10 chr12 60211682 60211875 -61045655 + B3 SINE B2 9 215 -1 6 1044 901 162 0 51 chr12 60212034 60212190 -61045340 + B1_Mur3 SINE Alu 1 148 -1 6 1044 385 213 9 9 chr12 60212261 60212370 -61045160 + CT-rich Low_complexity Low_complexity 1 109 0 6 1044 236 135 0 0 chr12 60212393 60212430 -61045100 - B1_Mus1 SINE Alu -104 44 8 6 1044 640 254 39 69 chr12 60212529 60212732 -61044798 + B3A SINE B2 2 198 0 6 1044 1140 77 7 0 chr12 60213194 60213337 -61044193 + B1_Mus1 SINE Alu 1 144 -4 6 1044 210 37 0 0 chr12 60213339 60213366 -61044164 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1044 569 174 16 62 chr12 60213398 60213527 -61044003 + B1_Mur4 SINE Alu 27 149 -1 6 1044 1225 108 102 0 chr12 60213624 60213780 -61043750 + B2_Mm2 SINE B2 1 157 -38 6 1044 441 0 0 0 chr12 60213780 60213829 -61043701 + (TAA)n Simple_repeat Simple_repeat 3 51 0 6 1044 1225 108 102 0 chr12 60213829 60213848 -61043682 + B2_Mm2 SINE B2 158 192 -3 6 1044 1028 66 0 0 chr12 60213880 60214016 -61043514 - B1_Mus2 SINE Alu 0 147 12 6 1044 23 62 0 30 chr12 60214113 60214154 -61043376 + AT_rich Low_complexity Low_complexity 1 40 0 6 1044 692 242 134 6 chr12 60214154 60214333 -61043197 - B3 SINE B2 -13 203 2 6 1044 23 62 0 30 chr12 60214333 60214357 -61043173 + AT_rich Low_complexity Low_complexity 1 24 0 6 1044 207 0 0 0 chr12 60214377 60214400 -61043130 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1044 555 268 21 14 chr12 60214402 60214542 -61042988 - RSINE1 SINE B4 -20 145 5 6 1044 1233 102 102 0 chr12 60214681 60214837 -61042693 + B2_Mm2 SINE B2 1 157 -38 6 1044 495 0 0 0 chr12 60214837 60214892 -61042638 + (TAA)n Simple_repeat Simple_repeat 3 57 0 6 1044 1233 102 102 0 chr12 60214892 60214911 -61042619 + B2_Mm2 SINE B2 158 192 -3 6 1044 1028 66 0 0 chr12 60214943 60215079 -61042451 - B1_Mus2 SINE Alu 0 147 12 6 1044 23 62 0 30 chr12 60215176 60215217 -61042313 + AT_rich Low_complexity Low_complexity 1 40 0 6 1044 692 242 134 6 chr12 60215217 60215396 -61042134 - B3 SINE B2 -13 203 2 6 1044 23 62 0 30 chr12 60215396 60215420 -61042110 + AT_rich Low_complexity Low_complexity 1 24 0 6 1044 207 0 0 0 chr12 60215440 60215463 -61042067 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1044 555 268 21 14 chr12 60215465 60215605 -61041925 - RSINE1 SINE B4 -20 145 5 6 1044 1435 85 11 11 chr12 60215744 60215935 -61041595 + B2_Mm1t SINE B2 1 191 -2 6 1044 4775 84 0 3 chr12 60215987 60216587 -61040943 - L1_Mus1 LINE L1 0 6567 5970 6 1044 519 271 44 19 chr12 60216633 60216791 -61040739 - RSINE1 SINE B4 0 165 4 6 1044 354 270 24 0 chr12 60217050 60217134 -61040396 + PB1D10 SINE Alu 6 102 -18 6 1044 234 0 0 0 chr12 60217134 60217160 -61040370 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1044 1119 96 0 0 chr12 60217160 60217296 -61040234 - B1_Mus2 SINE Alu -11 136 1 6 1044 180 0 0 0 chr12 60217316 60217336 -61040194 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1044 615 211 173 37 chr12 60217469 60217631 -61039899 - B3 SINE B2 -6 210 27 6 1044 617 288 12 93 chr12 60217811 60217983 -61039547 - RSINE1 SINE B4 -2 163 6 6 1044 310 215 170 11 chr12 60217999 60218093 -61039437 - PB1D10 SINE Alu -8 109 1 6 1044 767 197 34 34 chr12 60218846 60218993 -61038537 - B1_Mus2 SINE Alu 0 147 1 6 1044 29 0 0 0 chr12 60218999 60219028 -61038502 + AT_rich Low_complexity Low_complexity 1 29 0 6 1044 276 30 0 0 chr12 60219053 60219086 -61038444 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1044 812 200 70 6 chr12 60219097 60219268 -61038262 - B3A SINE B2 -16 182 1 6 1044 24 32 0 0 chr12 60219287 60219318 -61038212 + AT_rich Low_complexity Low_complexity 1 31 0 6 1044 608 329 12 0 chr12 60219332 60219493 -61038037 - RSINE1 SINE B4 0 165 3 6 1044 357 339 0 0 chr12 60219582 60219697 -61037833 - PB1D10 SINE Alu -1 116 2 6 1044 270 116 0 0 chr12 60219753 60219796 -61037734 + (TTG)n Simple_repeat Simple_repeat 2 44 0 6 1044 273 326 70 0 chr12 60219828 60219914 -61037616 + MLT1D LTR MaLR 1 92 -413 6 1044 346 306 66 50 chr12 60220000 60220182 -61037348 + MLT1D LTR MaLR 262 446 -59 6 1044 327 78 0 0 chr12 60220553 60220604 -61036926 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1044 733 231 50 19 chr12 60220863 60221022 -61036508 - RSINE1 SINE B4 0 165 2 6 1044 978 80 71 28 chr12 60221076 60221217 -61036313 + B1_Mus1 SINE Alu 2 148 0 6 1044 447 118 0 0 chr12 60221217 60221293 -61036237 + (A)n Simple_repeat Simple_repeat 1 76 0 6 1044 207 0 0 0 chr12 60221436 60221459 -61036071 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1044 964 119 60 0 chr12 60221488 60221639 -61035891 + B2_Mm2 SINE B2 2 161 -34 6 1044 207 0 0 0 chr12 60221639 60221662 -61035868 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1044 929 144 110 0 chr12 60221662 60221683 -61035847 + B2_Mm1t SINE B2 161 192 -1 6 1044 411 125 0 0 chr12 60221805 60221877 -61035653 + (T)n Simple_repeat Simple_repeat 1 72 0 6 1044 560 103 89 40 chr12 60221877 60221978 -61035552 - B1_Mus2 SINE Alu 0 147 42 6 1044 214 0 0 157 chr12 60221987 60222089 -61035441 + (CTCTG)n Simple_repeat Simple_repeat 5 90 0 6 1044 230 196 21 42 chr12 60222090 60222138 -61035392 - B1_Mus2 SINE Alu -88 59 13 6 1044 21192 19 2 0 chr12 60222277 60224710 -61032820 + L1Md_A LINE L1 3151 5586 -297 6 1044 8652 31 0 0 chr12 60224711 60225706 -61031824 + L1Md_A LINE L1 5588 6582 0 6 1044 504 127 0 25 chr12 60225913 60225994 -61031536 + B3A SINE B2 1 79 -119 6 1044 4241 110 85 2 chr12 60226003 60226629 -61030901 - RLTR33 LTR ERVK 0 678 1 6 1044 458 148 194 0 chr12 60226770 60226878 -61030652 + B3 SINE B2 88 216 0 6 1044 936 145 0 0 chr12 60226895 60227033 -61030497 + B1_Mur4 SINE Alu 1 138 -12 6 1044 215 0 0 62 chr12 60227033 60227065 -61030465 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 6 1044 582 285 0 0 chr12 60227545 60227668 -61029862 - B1_Mur2 SINE Alu -25 124 2 6 1044 390 220 43 130 chr12 60227694 60227722 -61029808 + B4A SINE B4 71 218 -74 6 1044 1023 67 0 0 chr12 60227722 60227856 -61029674 + B1_Mus1 SINE Alu 6 139 -9 7 1044 208 0 62 0 chr12 60227856 60227888 -61029642 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1044 483 214 165 8 chr12 60227894 60228021 -61029509 + B1_Mur1 SINE Alu 1 147 -2 7 1044 636 124 0 0 chr12 60228308 60228413 -61029117 + (TTCC)n Simple_repeat Simple_repeat 4 108 0 7 1044 348 187 0 0 chr12 60228405 60228487 -61029043 + T-rich Low_complexity Low_complexity 10 91 0 7 1044 1226 27 7 7 chr12 60228487 60228634 -61028896 - B1_Mm SINE Alu 0 147 1 7 1044 754 152 45 0 chr12 60228645 60228777 -61028753 - B1_Mur3 SINE Alu -7 142 5 7 1044 188 60 100 0 chr12 60228782 60228832 -61028698 + CT-rich Low_complexity Low_complexity 4 58 0 7 1044 446 189 119 52 chr12 60228835 60228969 -61028561 - B1F SINE Alu -6 143 1 7 1044 22 0 0 0 chr12 60229067 60229089 -61028441 + AT_rich Low_complexity Low_complexity 1 22 0 7 1044 798 193 0 7 chr12 60229207 60229343 -61028187 + B1_Mur4 SINE Alu 3 137 -13 7 1044 243 0 0 0 chr12 60229343 60229370 -61028160 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 7 1044 306 0 0 0 chr12 60229471 60229505 -61028025 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1044 207 0 0 0 chr12 60229824 60229847 -61027683 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1044 243 88 0 0 chr12 60230978 60231012 -61026518 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1044 347 266 84 28 chr12 60233980 60234123 -61023407 + B4A SINE B4 53 203 -89 7 1044 688 246 0 44 chr12 60234118 60234301 -61023229 - B3A SINE B2 -23 175 1 7 1044 512 255 176 19 chr12 60234304 60234680 -61022850 - L1M4 LINE L1 -3366 2780 2346 7 1044 228 35 0 0 chr12 60235337 60235366 -61022164 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1044 1278 34 0 0 chr12 60235771 60235918 -61021612 - B1_Mus2 SINE Alu 0 147 1 7 1044 4640 131 8 36 chr12 60235919 60236694 -61020836 + RMER6A LTR ERVK 1 753 -3 7 1044 1113 199 15 0 chr12 60237248 60237454 -61020076 - B3 SINE B2 -6 210 2 7 1044 257 151 0 19 chr12 60237649 60237703 -61019827 + CT-rich Low_complexity Low_complexity 2 54 0 7 1044 207 125 0 0 chr12 60237873 60237913 -61019617 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1044 354 165 38 12 chr12 60238912 60238992 -61018538 - L1M5 LINE L1 -764 5409 5328 7 1044 318 234 59 47 chr12 60239031 60239201 -61018329 + (CATG)n Simple_repeat Simple_repeat 1 172 0 7 1044 349 386 0 0 chr12 60239146 60239309 -61018221 + (CGTG)n Simple_repeat Simple_repeat 1 163 0 7 1044 541 218 17 138 chr12 60239325 60239506 -61018024 - RSINE1 SINE B4 -4 161 3 7 1044 614 124 0 0 chr12 60239606 60239703 -61017827 + BC1_Mm scRNA scRNA 8 104 -48 7 1044 261 232 69 29 chr12 60239828 60239930 -61017600 - L1M5 LINE L1 -1027 5119 5014 7 1044 738 265 159 10 chr12 60239938 60240239 -61017291 - MLT1B LTR MaLR 0 390 45 7 1044 311 197 128 26 chr12 60240237 60240315 -61017215 - B1_Mur3 SINE Alu -12 137 52 7 1044 2366 99 12 0 chr12 60240342 60240665 -61016865 - ORR1A2 LTR MaLR 0 327 1 7 1044 1100 170 80 0 chr12 60240682 60240882 -61016648 - B3 SINE B2 0 216 1 7 1044 716 238 59 27 chr12 60240959 60241145 -61016385 - B3A SINE B2 -5 193 2 7 1044 596 175 17 9 chr12 60241155 60241270 -61016260 - ID_B1 SINE B4 -4 220 105 7 1044 246 318 55 50 chr12 60241644 60241843 -61015687 - L1MB8 LINE L1 -54 6124 5925 7 1044 513 0 0 0 chr12 60241843 60241900 -61015630 + (TCCCC)n Simple_repeat Simple_repeat 4 60 0 7 1044 510 190 0 10 chr12 60241910 60242011 -61015519 - B1_Mur4 SINE Alu 0 150 51 7 1044 200 35 35 0 chr12 60242133 60242162 -61015368 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1044 354 290 19 39 chr12 60242218 60242322 -61015208 + PB1D7 SINE Alu 10 111 -9 7 1044 328 235 91 10 chr12 60242406 60242505 -61015025 + PB1D10 SINE Alu 10 116 -1 7 1044 228 296 202 10 chr12 60242518 60242726 -61014804 + L1M4 LINE L1 5326 5573 -601 7 1044 502 160 0 41 chr12 60242811 60242909 -61014621 - PB1D9 SINE Alu -8 112 19 7 1044 466 284 252 20 chr12 60243980 60244057 -61013473 - L1MEg LINE L1 -1849 4291 4216 7 1044 2023 179 135 31 chr12 60244057 60244540 -61012990 - MT2A LTR ERVL 0 533 1 7 1044 466 283 199 15 chr12 60244540 60244823 -61012707 - L1MEg LINE L1 -1925 4215 3845 7 1044 269 268 69 48 chr12 60245082 60245227 -61012303 - L1MEg LINE L1 -5917 325 178 7 1044 318 288 242 0 chr12 60246220 60246352 -61011178 - MER63B DNA AcHobo -1 435 272 7 1044 306 216 154 19 chr12 60248027 60248131 -61009399 + PB1D9 SINE Alu 2 119 -1 7 1044 210 105 0 0 chr12 60248147 60248185 -61009345 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1044 198 0 0 0 chr12 60248271 60248293 -61009237 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1044 351 254 107 0 chr12 60248296 60248418 -61009112 - B1F2 SINE Alu 0 149 15 7 1044 1111 235 143 131 chr12 60248985 60249510 -61008020 - MT2A LTR ERVL 0 533 3 7 1044 759 106 195 0 chr12 60249511 60249634 -61007896 + B1_Mus1 SINE Alu 2 148 0 7 1044 1453 169 166 0 chr12 60249880 60250205 -61007325 + RLTR30 LTR ERV1 1 379 0 7 1044 245 319 14 0 chr12 60250234 60250306 -61007224 - MIR SINE MIR -93 115 43 7 1044 219 146 0 0 chr12 60251027 60251068 -61006462 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 7 1044 935 132 184 16 chr12 60251085 60251270 -61006260 - B3 SINE B2 0 216 1 7 1044 387 253 109 69 chr12 60251333 60251609 -61005921 - B4 SINE B4 -1 291 5 7 1044 277 245 93 56 chr12 60251832 60251940 -61005590 - PB1D10 SINE Alu -2 115 4 7 1044 276 179 16 85 chr12 60252008 60252197 -61005333 + (TCTCTG)n Simple_repeat Simple_repeat 2 177 0 7 1044 214 247 0 98 chr12 60252229 60252422 -61005108 + (TCTCTG)n Simple_repeat Simple_repeat 4 177 0 7 1044 459 329 35 18 chr12 60252422 60252592 -61004938 - B3A SINE B2 -18 180 8 7 1044 587 246 35 45 chr12 60252883 60253083 -61004447 - B3A SINE B2 0 198 1 7 1044 470 173 106 0 chr12 60253259 60253363 -61004167 - B1_Mur4 SINE Alu -16 134 20 7 1044 333 0 0 0 chr12 60253847 60253884 -61003646 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1044 198 0 0 0 chr12 60253960 60253982 -61003548 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 7 1044 601 39 0 0 chr12 60254084 60254161 -61003369 - L1_Mus1 LINE L1 -6 6561 6485 7 1044 427 159 0 21 chr12 60254400 60254496 -61003034 + CT-rich Low_complexity Low_complexity 1 94 0 7 1044 269 254 0 0 chr12 60254636 60254691 -61002839 - B1F SINE Alu -17 132 78 7 1044 967 25 0 0 chr12 60254895 60255015 -61002515 + B1_Mus2 SINE Alu 22 141 -6 7 1044 897 143 0 0 chr12 60255051 60255191 -61002339 + B1_Mur3 SINE Alu 10 149 0 7 1044 22 0 0 0 chr12 60255625 60255647 -61001883 + AT_rich Low_complexity Low_complexity 1 22 0 7 1044 453 206 222 0 chr12 60255797 60255923 -61001607 - Lx3C LINE L1 -5 6971 6818 7 1044 2513 129 112 5 chr12 60255910 60256337 -61001193 + Lx3C LINE L1 6341 6813 -163 7 1044 396 269 109 81 chr12 60256362 60256609 -61000921 + B4 SINE B4 2 255 -37 7 1044 279 267 42 53 chr12 60256773 60256868 -61000662 + RSINE1 SINE B4 26 119 -46 7 1044 203 133 0 0 chr12 60257487 60257517 -61000013 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1044 416 226 9 36 chr12 60257634 60257744 -60999786 - B3A SINE B2 -89 109 3 7 1044 787 59 244 0 chr12 60257924 60258043 -60999487 + B1_Mus1 SINE Alu 1 148 0 7 1044 228 100 0 0 chr12 60258043 60258083 -60999447 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1044 424 262 33 52 chr12 60258089 60258242 -60999288 - B3 SINE B2 -28 188 39 7 1044 380 254 113 26 chr12 60258271 60258465 -60999065 + B4A SINE B4 1 211 -81 7 1044 240 167 0 0 chr12 60258643 60258691 -60998839 + CT-rich Low_complexity Low_complexity 1 48 0 7 1044 567 257 21 14 chr12 60258694 60258836 -60998694 - B1_Mur1 SINE Alu -5 144 2 7 1044 180 0 0 0 chr12 60258888 60258908 -60998622 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1044 466 184 105 0 chr12 60259036 60259150 -60998380 - RSINE1 SINE B4 -36 129 4 7 1044 260 292 31 0 chr12 60259797 60259862 -60997668 - MER44B DNA MER2_type -368 182 116 7 1044 741 160 16 0 chr12 60260333 60260458 -60997072 - B1F SINE Alu -3 146 20 7 1044 1780 167 71 26 chr12 60261324 60261675 -60995855 - ORR1B2 LTR MaLR 0 367 1 7 1044 400 209 103 60 chr12 60262194 60262311 -60995219 + RSINE1 SINE B4 3 124 -41 7 1044 732 276 43 47 chr12 60262910 60263168 -60994362 - B4A SINE B4 0 292 36 7 1044 221 243 0 63 chr12 60263349 60263428 -60994102 - ID4_ SINE ID -7 76 3 7 1044 652 176 35 0 chr12 60264027 60264169 -60993361 - URR1A DNA MER1_type -1 225 79 7 1044 864 306 139 12 chr12 60265454 60265858 -60991672 - MER82 DNA MER2_type -7 646 192 7 1044 385 270 47 8 chr12 60265860 60265987 -60991543 - ID_B1 SINE B4 -3 221 90 7 1044 707 241 25 45 chr12 60266010 60266210 -60991320 - B3A SINE B2 -1 197 2 7 1044 897 241 19 0 chr12 60266217 60266429 -60991101 - B3 SINE B2 0 216 1 7 1044 277 346 102 6 chr12 60266438 60266615 -60990915 - MER82 DNA MER2_type -457 196 3 7 1044 671 239 19 17 chr12 60266693 60266865 -60990665 - MTC LTR MaLR -231 169 1 7 1044 1223 61 0 0 chr12 60267271 60267419 -60990111 - B1_Mus1 SINE Alu 0 148 1 7 1044 356 279 159 35 chr12 60267489 60267716 -60989814 - ORR1D2 LTR MaLR 0 370 116 7 1044 636 183 8 38 chr12 60268067 60268198 -60989332 + B1_Mur1 SINE Alu 22 148 -1 7 1044 1436 63 21 0 chr12 60268255 60268444 -60989086 - B2_Mm2 SINE B2 -1 194 2 7 1044 5494 155 30 3 chr12 60268861 60269407 -60988123 - L1_Mur1 LINE L1 -2515 3371 2812 7 1044 186 0 57 29 chr12 60269407 60269442 -60988088 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 8 1044 5494 155 30 3 chr12 60269442 60269904 -60987626 - L1_Mur1 LINE L1 -3075 2811 2338 7 1044 749 178 0 0 chr12 60270091 60270226 -60987304 - B1_Mus1 SINE Alu -3 145 11 8 1044 478 231 48 88 chr12 60270411 60270438 -60987092 + B1F1 SINE Alu 9 149 0 8 1044 599 208 8 0 chr12 60270438 60270558 -60986972 + ID_B1 SINE B4 104 224 0 8 1044 383 197 28 0 chr12 60271077 60271148 -60986382 + B1_Mus2 SINE Alu 9 81 -66 8 1044 28 48 0 0 chr12 60271900 60271942 -60985588 + AT_rich Low_complexity Low_complexity 1 42 0 8 1044 496 272 83 41 chr12 60272240 60272409 -60985121 + B3A SINE B2 1 176 -22 8 1044 754 62 18 0 chr12 60272927 60273040 -60984490 + (CA)n Simple_repeat Simple_repeat 2 116 0 8 1044 36 0 0 0 chr12 60273626 60273662 -60983868 + AT_rich Low_complexity Low_complexity 1 36 0 8 1044 1223 41 0 0 chr12 60273815 60273962 -60983568 + B1_Mus1 SINE Alu 2 148 0 8 1044 1727 102 72 21 chr12 60273969 60274259 -60983271 + Lx LINE L1 6346 6650 -4 8 1044 200 93 45 23 chr12 60275207 60275251 -60982279 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1044 462 235 114 0 chr12 60276375 60276507 -60981023 + B1_Mur2 SINE Alu 3 149 0 8 1044 587 262 40 11 chr12 60276809 60276983 -60980547 + B3A SINE B2 2 180 -18 8 1044 720 175 0 23 chr12 60277620 60277749 -60979781 + B1_Mur1 SINE Alu 24 149 0 8 1044 2251 107 9 69 chr12 60277841 60278191 -60979339 - ORR1A4 LTR MaLR 0 329 1 8 1044 195 204 0 0 chr12 60278455 60278504 -60979026 + GA-rich Low_complexity Low_complexity 2 50 0 8 1044 43 47 0 0 chr12 60278571 60278635 -60978895 + AT_rich Low_complexity Low_complexity 1 64 0 8 1044 1019 267 127 3 chr12 60282033 60282356 -60975174 - Lx8 LINE L1 -690 6783 6421 8 1044 781 250 12 6 chr12 60282496 60282657 -60974873 + RSINE1 SINE B4 4 165 0 8 1044 1977 116 121 6 chr12 60283274 60283638 -60973892 - MTC LTR MaLR -2 419 14 8 1044 524 272 127 46 chr12 60284266 60284519 -60973011 - RLTR12B LTR ERVK -242 286 1 8 1044 1194 61 0 0 chr12 60284840 60284988 -60972542 - B1_Mus1 SINE Alu 0 148 1 8 1044 1283 58 92 6 chr12 60285457 60285631 -60971899 - B2_Mm2 SINE B2 -6 189 1 8 1044 930 184 91 15 chr12 60285663 60285862 -60971668 - B3 SINE B2 -1 215 2 8 1044 27 62 0 0 chr12 60285889 60285937 -60971593 + AT_rich Low_complexity Low_complexity 1 48 0 8 1044 22 0 0 0 chr12 60286681 60286703 -60970827 + AT_rich Low_complexity Low_complexity 1 22 0 8 1044 201 39 0 0 chr12 60286821 60286847 -60970683 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 8 1044 1120 100 0 0 chr12 60286851 60287011 -60970519 - B2_Mm2 SINE B2 -35 160 1 8 1044 370 266 0 21 chr12 60287154 60287250 -60970280 + PB1D10 SINE Alu 16 109 -8 8 1044 934 230 5 37 chr12 60287261 60287478 -60970052 + B3 SINE B2 2 211 -5 8 1044 1245 34 0 0 chr12 60287508 60287654 -60969876 + B1_Mus2 SINE Alu 2 147 0 8 1044 213 39 0 0 chr12 60287654 60287680 -60969850 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1044 4992 170 67 12 chr12 60287869 60288806 -60968724 - Lx5 LINE L1 -3 7047 6059 8 1044 1370 87 38 0 chr12 60288870 60289055 -60968475 - B2_Mm2 SINE B2 -1 194 3 8 1044 299 231 123 19 chr12 60289584 60289690 -60967840 - MTD LTR MaLR -5 414 298 8 1044 1175 48 7 7 chr12 60289811 60289957 -60967573 + B1_Mm SINE Alu 2 147 0 8 1044 647 213 184 28 chr12 60291274 60291453 -60966077 + B3 SINE B2 1 207 -9 8 1044 1233 54 0 0 chr12 60291582 60291729 -60965801 + B1_Mus1 SINE Alu 1 147 -1 8 1044 1183 68 0 0 chr12 60291849 60291997 -60965533 + B1_Mus1 SINE Alu 1 148 0 8 1044 415 176 139 131 chr12 60292289 60292426 -60965104 - B1_Mus2 SINE Alu -9 138 1 8 130 1171 44 0 0 chr12 60293046 60293183 -60964347 - B1_Mm SINE Alu -10 137 1 8 1045 406 222 163 39 chr12 60293954 60294132 -60963398 + B3 SINE B2 4 203 -13 8 1045 4394 137 32 14 chr12 60294305 60295047 -60962483 - RMER6A LTR ERVK 0 756 1 8 1045 28 0 0 0 chr12 60295585 60295613 -60961917 + AT_rich Low_complexity Low_complexity 1 28 0 8 1045 656 283 25 7 chr12 60295749 60295956 -60961574 - B3A SINE B2 -1 215 3 8 1045 339 125 0 0 chr12 60296626 60296648 -60960882 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1045 1248 48 0 0 chr12 60296648 60296795 -60960735 + B1_Mus2 SINE Alu 1 147 0 8 1045 339 125 0 0 chr12 60296795 60296828 -60960702 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1045 628 252 130 58 chr12 60297046 60297269 -60960261 - Lx8 LINE L1 -571 6902 6664 8 1045 328 271 62 0 chr12 60297292 60297388 -60960142 - Lx8 LINE L1 -751 6722 6621 8 1045 186 150 0 0 chr12 60298175 60298215 -60959315 + (CTA)n Simple_repeat Simple_repeat 1 40 0 8 1045 532 171 0 96 chr12 60298268 60298404 -60959126 + B1_Mur1 SINE Alu 5 127 -22 8 1045 258 339 60 9 chr12 60298495 60298611 -60958919 + MIR SINE MIR 117 238 -24 8 1045 832 170 57 0 chr12 60299086 60299227 -60958303 + B1_Mur4 SINE Alu 2 150 0 8 1045 23 0 0 0 chr12 60299357 60299380 -60958150 + AT_rich Low_complexity Low_complexity 1 23 0 8 1045 561 179 179 0 chr12 60299724 60299847 -60957683 - B1_Mur3 SINE Alu 0 149 5 8 1045 573 142 150 0 chr12 60300430 60300543 -60956987 + ORR1D1 LTR MaLR 1 130 -244 8 1045 1076 202 151 64 chr12 60300543 60300887 -60956643 + ORR1D1 LTR MaLR 1 374 0 8 1045 302 289 13 0 chr12 60300888 60300964 -60956566 - ID_B1 SINE B4 -67 157 81 8 1045 994 67 0 0 chr12 60301069 60301204 -60956326 + B1_Mus1 SINE Alu 6 140 -8 8 1045 360 0 0 0 chr12 60301204 60301244 -60956286 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1045 981 75 38 0 chr12 60301244 60301377 -60956153 + B1_Mus1 SINE Alu 2 139 -9 8 1045 270 0 0 0 chr12 60301377 60301407 -60956123 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1045 1034 79 36 0 chr12 60301407 60301547 -60955983 + B1_Mus1 SINE Alu 2 146 -2 8 1045 224 0 65 0 chr12 60301561 60301592 -60955938 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 8 1045 243 114 0 0 chr12 60302334 60302378 -60955152 + (T)n Simple_repeat Simple_repeat 1 44 0 8 1045 23 33 0 0 chr12 60303014 60303044 -60954486 + AT_rich Low_complexity Low_complexity 1 30 0 8 1045 21 0 0 0 chr12 60303916 60303937 -60953593 + AT_rich Low_complexity Low_complexity 1 21 0 8 1045 346 188 138 0 chr12 60304759 60304839 -60952691 - B1F SINE Alu 0 149 59 8 1045 25 51 0 0 chr12 60306135 60306174 -60951356 + AT_rich Low_complexity Low_complexity 1 39 0 8 1045 702 271 17 22 chr12 60306300 60306495 -60951035 + B3 SINE B2 8 208 -8 8 1045 231 336 67 30 chr12 60306685 60306820 -60950710 - B4 SINE B4 -83 209 70 8 1045 553 194 55 41 chr12 60307427 60307572 -60949958 + B1_Mm SINE Alu 1 147 0 8 1045 216 0 0 0 chr12 60307649 60307673 -60949857 + (CAAAC)n Simple_repeat Simple_repeat 5 28 0 8 1045 210 150 0 0 chr12 60307679 60307719 -60949811 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 8 1045 230 0 33 0 chr12 60307744 60307774 -60949756 + (CAAAC)n Simple_repeat Simple_repeat 4 34 0 8 1045 349 296 41 8 chr12 60308038 60308159 -60949371 + B1F SINE Alu 4 117 0 8 1045 872 263 162 34 chr12 60308217 60308731 -60948799 + L1ME1 LINE L1 5362 5938 -241 8 1045 2716 132 24 31 chr12 60308903 60309316 -60948214 + L1VL4 LINE L1 63 824 -5511 8 1045 697 163 109 60 chr12 60309316 60309499 -60948031 + B2_Mm2 SINE B2 4 195 0 8 1045 2716 121 2 32 chr12 60309499 60309676 -60947854 + L1VL4 LINE L1 825 990 -5368 8 1045 20239 152 33 12 chr12 60309675 60312616 -60944914 + L1_Mur2 LINE L1 2112 5115 -762 8 1045 3038 60 28 8 chr12 60312616 60313016 -60944514 + L1Md_F2 LINE L1 6164 6571 -11 8 1045 20239 152 33 12 chr12 60313016 60313068 -60944462 + L1_Mur2 LINE L1 5116 5171 -706 8 1045 2682 34 168 0 chr12 60313068 60313420 -60944110 + IAPLTR2a LTR ERVK 1 411 0 8 1045 20239 152 33 12 chr12 60313420 60314069 -60943461 + L1_Mur2 LINE L1 5172 5830 -47 8 1045 563 195 163 8 chr12 60314126 60314255 -60943275 + B3 SINE B2 55 203 -13 8 1045 208 244 12 37 chr12 60314762 60314825 -60942705 + CT-rich Low_complexity Low_complexity 21 82 0 8 1045 701 188 37 8 chr12 60314825 60314959 -60942571 - B1_Mur2 SINE Alu -10 139 2 8 1045 208 244 12 37 chr12 60314959 60314976 -60942554 + polypyrimidine Low_complexity Low_complexity 4 20 0 8 1045 27 0 0 0 chr12 60315882 60315909 -60941621 + AT_rich Low_complexity Low_complexity 1 27 0 8 1045 22 35 0 0 chr12 60316084 60316113 -60941417 + AT_rich Low_complexity Low_complexity 1 29 0 8 1045 770 175 7 0 chr12 60316217 60316354 -60941176 - B1_Mur4 SINE Alu -2 148 11 8 1045 727 152 28 35 chr12 60316922 60317065 -60940465 + B1_Mur4 SINE Alu 9 150 0 8 1045 1085 90 0 27 chr12 60318295 60318444 -60939086 - B1_Mus2 SINE Alu 0 147 3 8 1045 476 286 21 14 chr12 60318449 60318591 -60938939 - ID_B1 SINE B4 -1 223 81 8 1045 775 173 14 0 chr12 60318630 60318769 -60938761 - B1_Mur4 SINE Alu -9 141 1 8 1045 229 286 0 0 chr12 60319939 60320009 -60937521 + (CCG)n Simple_repeat Simple_repeat 3 72 0 8 1045 22 35 0 0 chr12 60320289 60320318 -60937212 + GC_rich Low_complexity Low_complexity 1 29 0 8 1045 210 179 0 0 chr12 60320336 60320392 -60937138 + (CCG)n Simple_repeat Simple_repeat 3 58 0 8 1045 1188 35 14 0 chr12 60321640 60321784 -60935746 - B1_Mus2 SINE Alu 0 147 2 8 1045 194 0 0 37 chr12 60321939 60321966 -60935564 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 8 1045 1190 55 7 0 chr12 60321966 60322112 -60935418 - B1_Mm SINE Alu 0 147 1 9 1045 1580 207 35 183 chr12 60322373 60322591 -60934939 + MT2B LTR ERVL 1 166 -435 9 1045 1245 80 45 28 chr12 60322591 60322770 -60934760 + B2_Mm2 SINE B2 1 182 -13 9 1045 1580 207 35 183 chr12 60322770 60323256 -60934274 + MT2B LTR ERVL 167 601 0 9 1045 317 211 144 18 chr12 60323498 60323609 -60933921 - L1MC4 LINE L1 -803 7239 7115 9 1045 3122 91 53 78 chr12 60323609 60324228 -60933302 + RLTR6_Mm LTR ERV1 1 604 -50 9 1045 6656 23 46 17 chr12 60324229 60325035 -60932495 + RLTR6-int LTR ERV1 1 829 -6949 9 1045 406 183 108 49 chr12 60325029 60325195 -60932335 + MMVL30-int LTR ERV1 280 533 -7023 9 1045 605 163 15 7 chr12 60325466 60325602 -60931928 + MMVL30-int LTR ERV1 716 852 -2846 9 1045 16640 27 35 2 chr12 60325602 60327527 -60930003 + MMVL30-int LTR ERV1 1710 3698 0 9 1045 2985 92 55 80 chr12 60327527 60328128 -60929402 + RLTR6_Mm LTR ERV1 1 586 -68 9 1045 21 0 0 0 chr12 60328431 60328452 -60929078 + AT_rich Low_complexity Low_complexity 1 21 0 9 1045 1136 88 0 0 chr12 60328900 60329047 -60928483 + B1_Mus1 SINE Alu 2 148 0 9 1045 228 67 0 0 chr12 60329052 60329082 -60928448 + (TCC)n Simple_repeat Simple_repeat 3 32 0 9 1045 1200 41 0 20 chr12 60329082 60329232 -60928298 - B1_Mus2 SINE Alu 0 147 1 9 1045 421 214 101 17 chr12 60330168 60330184 -60927346 + B1_Mur1 SINE Alu 11 27 -122 9 1045 3661 181 16 14 chr12 60330184 60330873 -60926657 + Lx2B LINE L1 6306 6995 -5 9 1045 421 214 101 17 chr12 60330873 60330975 -60926555 + B1_Mur1 SINE Alu 28 138 -11 9 1045 942 228 84 121 chr12 60331169 60331259 -60926271 - ORR1C1 LTR MaLR 0 378 282 9 1045 2998 71 10 15 chr12 60331259 60331661 -60925869 + MTB LTR MaLR 1 400 0 9 1045 942 228 84 121 chr12 60331661 60331950 -60925580 - ORR1C1 LTR MaLR -97 281 13 9 1045 1773 122 174 13 chr12 60332235 60332551 -60924979 - ORR1B2 LTR MaLR 0 367 1 9 1045 25 83 0 0 chr12 60332901 60332961 -60924569 + AT_rich Low_complexity Low_complexity 1 60 0 9 1045 1196 230 82 8 chr12 60333758 60334025 -60923505 + MTE2a LTR MaLR 15 301 -78 9 1045 3319 91 2 0 chr12 60334189 60334595 -60922935 - MTB_Mm LTR MaLR 0 407 1 9 1045 231 302 113 40 chr12 60335098 60335222 -60922308 + MER117 DNA MER1_type 64 196 -1 9 1045 2496 149 102 4 chr12 60335265 60335764 -60921766 + L1_Mur3 LINE L1 696 1243 -6469 9 1045 187 257 143 0 chr12 60335934 60336004 -60921526 + L2a LINE L2 3060 3139 -287 9 1045 379 218 12 25 chr12 60336062 60336142 -60921388 - ID4 SINE ID -4 79 1 9 1045 354 316 143 15 chr12 60336143 60336339 -60921191 + L2a LINE L2 3205 3425 -1 9 1045 895 236 23 60 chr12 60336559 60336775 -60920755 + B3 SINE B2 2 209 -7 9 1045 259 273 14 70 chr12 60337476 60337547 -60919983 + tRNA-Ala-GCY_ tRNA tRNA 9 75 0 9 1045 2271 127 91 16 chr12 60337575 60337958 -60919572 - MTC LTR MaLR -9 412 1 9 1045 1180 188 5 34 chr12 60338072 60338281 -60919249 + B3 SINE B2 4 206 -10 9 1045 2221 117 180 49 chr12 60338521 60338927 -60918603 + RMER6B LTR ERVK 1 459 -2 9 1045 414 0 0 0 chr12 60338983 60339029 -60918501 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 9 1045 1184 127 125 19 chr12 60340240 60340448 -60917082 + MTC LTR MaLR 1 230 -191 9 1045 33670 59 3 89 chr12 60340734 60341971 -60915559 - L1Md_F3 LINE L1 -5 6579 5355 9 1045 1430 245 73 70 chr12 60341971 60342529 -60915001 + RLTR1 LTR ERV1 52 611 -13 9 1045 33670 59 3 89 chr12 60342529 60347470 -60910060 - L1Md_F3 LINE L1 -5 5354 459 9 1045 1300 54 0 0 chr12 60348308 60348455 -60909075 - B1_Mm SINE Alu 0 147 1 9 1045 621 256 59 36 chr12 60348640 60348859 -60908671 + L1MA5 LINE L1 5784 6007 -293 9 1045 1040 279 21 50 chr12 60349317 60349695 -60907835 + RLTR16 LTR ERVK 139 505 0 9 1045 528 266 188 59 chr12 60350258 60350530 -60907000 + ORR1D2 LTR MaLR 6 312 -58 9 1045 1483 85 16 0 chr12 60350538 60350726 -60906804 - B2_Mm2 SINE B2 -3 192 2 9 1045 1054 203 6 0 chr12 60350775 60350952 -60906578 - B3 SINE B2 -38 178 1 9 1045 275 227 15 15 chr12 60350957 60351024 -60906506 + ORR1D2 LTR MaLR 313 379 0 9 1045 835 287 71 75 chr12 60351185 60351673 -60905857 + MLT1F-int LTR MaLR 83 599 -810 9 1045 624 204 70 58 chr12 60351673 60351834 -60905696 + B3A SINE B2 1 159 -39 9 1045 482 57 0 14 chr12 60351834 60351905 -60905625 + (CA)n Simple_repeat Simple_repeat 2 71 0 9 1045 407 249 63 94 chr12 60351905 60351934 -60905596 + B2_Mm2 SINE B2 158 185 -10 9 1045 722 254 86 20 chr12 60351956 60352153 -60905377 + MTD LTR MaLR 1 210 -209 9 1045 1184 180 110 4 chr12 60352159 60352404 -60905126 + Lx9 LINE L1 6693 6963 -681 9 1045 874 180 85 25 chr12 60352404 60352603 -60904927 + URR1B DNA MER1_type 15 225 0 9 1045 1189 189 25 17 chr12 60352603 60352829 -60904701 - MTD LTR MaLR -182 237 10 9 1045 717 283 16 31 chr12 60353065 60353258 -60904272 + B3A SINE B2 1 190 -8 9 1045 198 0 0 0 chr12 60353394 60353416 -60904114 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 9 1045 278 156 0 0 chr12 60353419 60353464 -60904066 - RMER1C Other Other -8 1334 1290 9 1045 5117 188 108 10 chr12 60353462 60354688 -60902842 + RMER1A Other Other 1 1029 -1 9 1045 1283 48 0 0 chr12 60354949 60355096 -60902434 + B1_Mus2 SINE Alu 1 147 0 9 1045 12836 61 37 16 chr12 60355299 60357071 -60900459 - RLTR22_Mus LTR ERVK 0 1808 1 9 1045 326 291 87 67 chr12 60357185 60357488 -60900042 - MTEa LTR MaLR -2 377 66 9 1045 293 281 87 27 chr12 60357961 60358111 -60899419 + L1MC4 LINE L1 6815 6973 -1069 9 1045 1117 52 15 7 chr12 60358350 60358485 -60899045 - B1_Mus2 SINE Alu -11 136 1 9 1045 301 233 84 37 chr12 60358660 60358761 -60898769 - MLT1A1 LTR MaLR 0 390 294 9 1045 871 75 14 0 chr12 60358920 60359066 -60898464 + (TC)n Simple_repeat Simple_repeat 2 149 0 9 1045 180 0 0 0 chr12 60359066 60359085 -60898445 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1045 696 255 11 52 chr12 60359093 60359267 -60898263 - B4 SINE B4 -124 168 2 9 1045 423 204 80 0 chr12 60359587 60359675 -60897855 + B1_Mur1 SINE Alu 27 121 -28 9 1045 374 349 66 51 chr12 60360321 60360671 -60896859 - ERVL-E-int LTR ERVL -1298 4369 4015 9 1045 279 268 0 18 chr12 60360956 60361013 -60896517 - B1F1 SINE Alu -93 56 1 9 1045 236 302 22 122 chr12 60361824 60362005 -60895525 + L2a LINE L2 3263 3425 -1 9 1045 596 179 0 7 chr12 60362345 60362497 -60895033 + (TG)n Simple_repeat Simple_repeat 2 152 0 9 1045 340 336 25 114 chr12 60363420 60363665 -60893865 + B4 SINE B4 60 282 -10 9 1045 300 130 0 0 chr12 60364043 60364089 -60893441 - tRNA-Gln-CAA_ tRNA tRNA -8 67 22 9 1045 321 135 0 0 chr12 60364269 60364321 -60893209 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 9 1045 1518 77 0 15 chr12 60364881 60365078 -60892452 - B2_Mm2 SINE B2 0 195 2 9 1045 641 196 120 0 chr12 60365145 60365278 -60892252 + B1_Mur2 SINE Alu 1 149 0 9 1045 231 114 0 0 chr12 60365281 60365316 -60892214 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1045 639 281 26 0 chr12 60365337 60365503 -60892027 - Lx9 LINE L1 -862 6782 6490 9 1045 2164 262 108 24 chr12 60365503 60366247 -60891283 + Lx9 LINE L1 6813 7618 -26 9 1045 26 0 0 0 chr12 60366255 60366281 -60891249 + AT_rich Low_complexity Low_complexity 1 26 0 9 1045 275 289 0 43 chr12 60366323 60366417 -60891113 + LTR85a LTR Gypsy? 590 679 -23 9 1045 346 332 37 90 chr12 60366746 60367162 -60890368 - LTR85a LTR Gypsy? -23 679 245 9 1045 1093 156 65 105 chr12 60367361 60367410 -60890120 - RMER17C LTR ERVK -13 397 344 9 1045 450 0 0 0 chr12 60367410 60367460 -60890070 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1045 1093 156 65 105 chr12 60367460 60367762 -60889768 - RMER17C LTR ERVK -67 343 61 9 1045 1424 39 6 6 chr12 60367772 60367954 -60889576 - MTA_Mm LTR MaLR 0 396 215 9 1045 369 155 0 0 chr12 60367955 60368013 -60889517 - RMER17C LTR ERVK -352 58 1 9 1045 296 103 12 60 chr12 60368539 60368587 -60888943 + T-rich Low_complexity Low_complexity 34 80 0 9 1045 1237 82 0 0 chr12 60368587 60368734 -60888796 - B1_Mus2 SINE Alu 0 147 1 9 1045 296 103 12 60 chr12 60368734 60368768 -60888762 + T-rich Low_complexity Low_complexity 2 33 0 9 1045 7536 59 33 1 chr12 60368812 60369840 -60887690 - L1_Mus1 LINE L1 -1 6566 5506 9 1045 7540 70 13 2 chr12 60369837 60370816 -60886714 + L1_Mus1 LINE L1 4477 5466 -417 9 1045 37467 29 1 10 chr12 60370812 60375856 -60881674 + L1Md_T LINE L1 499 5501 -382 9 1045 8571 28 1 3 chr12 60375856 60376787 -60880743 - RLTR13B3 LTR ERVK 0 929 1 9 1045 37467 24 1 2 chr12 60376787 60376878 -60880652 + L1Md_T LINE L1 5502 5586 -297 9 1045 8695 39 14 0 chr12 60376878 60377859 -60879671 + L1Md_T LINE L1 5587 6581 -1 9 1045 595 99 0 0 chr12 60377859 60377940 -60879590 + L1_Mm LINE L1 5453 5533 -350 9 1045 641 256 69 20 chr12 60377944 60378147 -60879383 - B3 SINE B2 0 216 4 9 1045 1210 107 77 0 chr12 60378222 60378390 -60879140 + B2_Mm2 SINE B2 1 181 -14 9 1045 24 0 0 0 chr12 60378392 60378416 -60879114 + AT_rich Low_complexity Low_complexity 1 24 0 9 1045 971 259 19 14 chr12 60379438 60379653 -60877877 + B3 SINE B2 1 216 0 9 1045 1232 212 87 31 chr12 60379944 60380362 -60877168 + Lx4B LINE L1 6520 7037 -21 9 1045 213 121 0 0 chr12 60380363 60380396 -60877134 + (TAAG)n Simple_repeat Simple_repeat 2 34 0 9 1045 674 236 159 11 chr12 60380404 60380580 -60876950 - B3 SINE B2 -7 209 8 9 1045 6881 86 20 40 chr12 60380982 60382581 -60874949 + L1VL2 LINE L1 388 1871 -4015 9 1045 1627 53 0 0 chr12 60382581 60382771 -60874759 - L1Md_T LINE L1 -2 6580 6391 9 1045 3670 165 29 148 chr12 60382771 60383028 -60874502 + L1VL2 LINE L1 1872 2130 -3756 9 1045 280 326 0 0 chr12 60383171 60383260 -60874270 - PB1D10 SINE Alu -2 115 27 9 1045 28 48 0 0 chr12 60384129 60384171 -60873359 + AT_rich Low_complexity Low_complexity 1 42 0 9 1045 2285 196 50 12 chr12 60384251 60384731 -60872799 - RMER1C Other Other 0 1342 845 9 1045 370 178 11 11 chr12 60384731 60384822 -60872708 + CT-rich Low_complexity Low_complexity 4 94 0 9 1045 261 237 17 17 chr12 60384825 60384878 -60872652 - ID_B1 SINE B4 -9 215 163 9 1045 1297 261 87 0 chr12 60384878 60385189 -60872341 + MTE2b LTR MaLR 1 338 -41 9 1045 230 327 45 63 chr12 60386465 60386576 -60870954 - B1F1 SINE Alu -35 114 6 9 1045 1289 41 0 0 chr12 60386889 60387035 -60870495 - B1_Mus2 SINE Alu 0 147 2 9 1045 504 278 7 35 chr12 60387062 60387203 -60870327 - RSINE1 SINE B4 0 165 28 9 1045 1124 198 26 41 chr12 60387233 60387339 -60870191 - RMER1B Other Other -7 1059 956 9 1045 450 0 0 0 chr12 60387339 60387389 -60870141 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 1 1045 1124 198 26 41 chr12 60387389 60387550 -60869980 - RMER1B Other Other -111 955 796 9 1045 610 111 40 0 chr12 60387554 60387653 -60869877 + B1_Mus2 SINE Alu 45 147 0 1 1045 1156 197 81 56 chr12 60387711 60388033 -60869497 - RLTR14 LTR ERV1 -52 330 1 1 1045 751 274 166 44 chr12 60388334 60388654 -60868876 + ORR1E LTR MaLR 1 359 0 1 1045 255 236 181 11 chr12 60388955 60389049 -60868481 - MER5B DNA MER1_type -22 156 47 1 1045 2284 137 49 52 chr12 60390421 60390846 -60866684 + RLTR23 LTR ERV1 1 424 -6 1 1045 213 336 33 33 chr12 60390924 60391044 -60866486 - L3 LINE CR1 -2252 2237 2118 1 1045 225 344 81 70 chr12 60391200 60391372 -60866158 + LTR41B LTR ERVL 1 174 -584 1 1045 337 376 10 19 chr12 60391661 60391764 -60865766 + RMER20B LTR ERVK 495 596 -31 1 1045 317 284 46 56 chr12 60391758 60391866 -60865664 + RMER20B LTR ERVK 505 611 -16 1 1045 239 233 98 80 chr12 60391799 60391911 -60865619 - B1_Mur1 SINE Alu -31 118 5 1 1045 429 20 0 0 chr12 60394765 60394815 -60862715 + (GAA)n Simple_repeat Simple_repeat 2 51 0 1 1045 198 0 0 0 chr12 60394815 60394837 -60862693 + (CAA)n Simple_repeat Simple_repeat 1 22 0 1 1045 467 148 12 0 chr12 60395136 60395217 -60862313 - MTC LTR MaLR -339 82 1 1 1045 1140 289 52 29 chr12 60395240 60395586 -60861944 - ORR1E LTR MaLR -5 354 1 1 1045 475 365 33 59 chr12 60396132 60396403 -60861127 + RLTR26 LTR ERVK 168 431 -211 1 1045 990 160 0 0 chr12 60396427 60396571 -60860959 + B1_Mur4 SINE Alu 2 145 -5 1 1045 339 165 37 25 chr12 60396729 60396810 -60860720 - RMER5 LTR ERV1 -104 430 349 1 1045 608 288 61 16 chr12 60396864 60397111 -60860419 - RMER5 LTR ERV1 -193 341 84 1 1045 1467 276 55 21 chr12 60397112 60397582 -60859948 - RMER5 LTR ERV1 0 534 49 1 1045 286 250 0 89 chr12 60397630 60397709 -60859821 - RMER5 LTR ERV1 -448 86 15 1 1045 930 303 55 41 chr12 60397782 60398103 -60859427 - MLT2B3 LTR ERVL -63 491 190 1 1045 390 57 0 0 chr12 60398103 60398156 -60859374 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1045 930 308 88 78 chr12 60398156 60398356 -60859174 - MLT2B3 LTR ERVL -351 203 1 1 1045 266 301 35 17 chr12 60398581 60398696 -60858834 - L2a LINE L2 -1 3425 3309 1 1045 4660 12 2 12 chr12 60398831 60399329 -60858201 - MT2_Mm LTR ERVL 0 493 1 1 1045 322 0 0 0 chr12 60399329 60399367 -60858163 - MERVL-int LTR ERVL 0 5485 5448 1 1045 387 167 46 35 chr12 60399367 60399454 -60858076 - ORR1E-int LTR MaLR -1323 640 553 1 1045 48296 16 6 0 chr12 60399454 60404780 -60852750 - MERVL-int LTR ERVL -125 5360 1 1 1045 4660 12 2 12 chr12 60404780 60405278 -60852252 - MT2_Mm LTR ERVL 0 493 1 1 1045 423 0 0 0 chr12 60406094 60406141 -60851389 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 1045 1174 84 0 0 chr12 60406145 60406287 -60851243 - B1_Mus2 SINE Alu -5 142 1 1 1045 21 0 0 0 chr12 60406287 60406308 -60851222 + AT_rich Low_complexity Low_complexity 1 21 0 1 1045 2741 196 72 24 chr12 60406435 60406898 -60850632 - Lx9 LINE L1 -2 7642 7148 1 1045 185 0 40 0 chr12 60406898 60406923 -60850607 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 1045 1689 153 67 16 chr12 60406923 60407235 -60850295 - Lx4A LINE L1 -10 7048 6721 1 1045 2741 196 72 24 chr12 60407235 60407407 -60850123 - Lx9 LINE L1 -497 7147 6976 1 1045 430 171 26 0 chr12 60407427 60407503 -60850027 - L1_Rod LINE L1 -3508 2339 2262 1 1045 488 246 167 15 chr12 60407508 60407706 -60849824 - L1_Rod LINE L1 -6868 304 77 1 1045 502 228 31 211 chr12 60407717 60407845 -60849685 - B3A SINE B2 -3 195 87 1 1045 1967 191 43 11 chr12 60408604 60408974 -60848556 + RLTR14 LTR ERV1 1 382 0 1 1045 552 211 39 0 chr12 60409067 60409171 -60848359 - PB1D9 SINE Alu -8 112 5 1 1045 321 200 7 0 chr12 60409882 60409963 -60847567 + L1_Mur1 LINE L1 680 751 -6231 1 1045 2759 134 79 0 chr12 60410144 60410613 -60846917 + L1_Mur1 LINE L1 709 1214 -5768 1 1045 702 154 58 7 chr12 60410633 60410770 -60846760 + Lx2B LINE L1 6853 6996 -4 1 1045 5195 92 42 14 chr12 60410965 60411695 -60845835 + RMER17A LTR ERVK 1 751 0 1 1045 1800 177 74 15 chr12 60411794 60412133 -60845397 - ORR1B2 LTR MaLR -8 359 1 1 1045 4404 198 76 7 chr12 60412143 60412351 -60845179 - ORR1B2-int LTR MaLR -27 1482 1262 1 1045 5256 48 2 0 chr12 60412351 60412937 -60844593 + LTRIS_Mus LTR ERV1 1 587 0 1 1045 4404 198 76 7 chr12 60412937 60413677 -60843853 - ORR1B2-int LTR MaLR -248 1261 469 1 1045 1999 142 41 52 chr12 60413687 60414050 -60843480 - ORR1B2 LTR MaLR -8 359 1 1 1045 667 206 19 76 chr12 60414312 60414371 -60843159 + B1_Mur2 SINE Alu 1 56 -93 1 1045 4577 113 8 142 chr12 60414371 60414914 -60842616 - RMER6A LTR ERVK 0 756 316 1 1045 1227 70 0 0 chr12 60414914 60415056 -60842474 - B1_Mus1 SINE Alu -6 142 1 1 1045 4577 113 8 142 chr12 60415056 60415385 -60842145 - RMER6A LTR ERVK -441 315 1 1 1045 667 206 19 76 chr12 60415385 60415483 -60842047 + B1_Mur2 SINE Alu 57 149 0 1 1045 1113 205 20 10 chr12 60415763 60415965 -60841565 + Lx7 LINE L1 6610 6813 -883 1 1045 298 305 22 38 chr12 60415948 60416132 -60841398 - L1_Mur3 LINE L1 -1492 4388 4208 1 1045 891 280 52 37 chr12 60416104 60416568 -60840962 - L1_Rod LINE L1 -3914 1933 1463 1 1045 878 309 68 33 chr12 60416787 60417237 -60840293 - Lx6 LINE L1 -151 7309 6469 1 1045 276 254 16 0 chr12 60417226 60417289 -60840241 - Lx6 LINE L1 -879 6581 6518 1 1045 1583 37 31 21 chr12 60417832 60418025 -60839505 - B2_Mm2 SINE B2 0 195 1 1 1045 216 135 0 0 chr12 60418085 60418122 -60839408 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1045 618 145 17 181 chr12 60419179 60419356 -60838174 - ORR1B2 LTR MaLR -203 164 17 1 1045 27 0 0 0 chr12 60419358 60419385 -60838145 + AT_rich Low_complexity Low_complexity 1 27 0 1 130 38387 63 8 16 chr12 60419386 60425607 -60831923 - L1Md_F3 LINE L1 0 6584 217 1 1046 528 16 0 0 chr12 60425989 60426050 -60831480 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1046 3532 122 38 10 chr12 60426142 60426262 -60831268 - Lx2B LINE L1 0 7000 6883 1 1046 225 0 0 0 chr12 60426262 60426287 -60831243 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 1 1046 3532 122 38 10 chr12 60426287 60426672 -60830858 - Lx2B LINE L1 -118 6882 6483 1 1046 2519 150 47 8 chr12 60427419 60427821 -60829709 - MTC LTR MaLR -3 418 1 1 1046 3172 132 143 2 chr12 60428155 60428673 -60828857 + Lx2B LINE L1 6410 7000 0 1 1046 258 151 27 14 chr12 60429310 60429384 -60828146 + CT-rich Low_complexity Low_complexity 3 77 0 1 1046 956 176 0 0 chr12 60429398 60429546 -60827984 - B1_Mur2 SINE Alu -1 148 1 1 1046 737 303 0 0 chr12 60430381 60430533 -60826997 - B3 SINE B2 -63 153 2 1 1046 390 175 255 112 chr12 60430554 60430715 -60826815 - B3 SINE B2 -25 191 2 1 1046 727 242 0 0 chr12 60430726 60430858 -60826672 - B1_Mur1 SINE Alu -5 144 13 1 1046 292 367 55 9 chr12 60430761 60430871 -60826659 - B4 SINE B4 -94 198 84 1 1046 1357 178 214 43 chr12 60430920 60431233 -60826297 - ORR1B2 LTR MaLR 0 367 1 1 1046 1185 75 7 0 chr12 60431590 60431736 -60825794 + B1_Mus1 SINE Alu 2 148 0 1 1046 1221 75 0 0 chr12 60432172 60432319 -60825211 - B1_Mm SINE Alu 0 147 1 1 1046 205 204 0 20 chr12 60432762 60432794 -60824736 + (CATA)n Simple_repeat Simple_repeat 2 33 0 1 1046 414 0 0 0 chr12 60432794 60432840 -60824690 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1 1046 205 204 0 20 chr12 60432840 60432857 -60824673 + (CATA)n Simple_repeat Simple_repeat 2 18 0 1 1046 318 106 0 0 chr12 60433474 60433521 -60824009 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1046 468 0 0 0 chr12 60433532 60433584 -60823946 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1 1046 1103 239 64 96 chr12 60433584 60434007 -60823523 - MT2A LTR ERVL -58 543 3 1 1046 297 336 35 35 chr12 60434117 60434231 -60823299 + PB1D10 SINE Alu 2 115 -2 1 1046 382 200 25 68 chr12 60434467 60434585 -60822945 - Lx8 LINE L1 -3 7470 7358 1 1046 252 120 0 0 chr12 60434589 60434639 -60822891 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1046 2944 73 8 5 chr12 60434643 60435027 -60822503 + MTB LTR MaLR 1 383 -17 1 1046 3934 39 52 0 chr12 60435027 60435490 -60822040 + L1Md_F2 LINE L1 6096 6582 0 1 1046 2944 73 8 5 chr12 60435490 60435504 -60822026 + MTB LTR MaLR 384 399 -1 1 1046 189 74 0 0 chr12 60436413 60436440 -60821090 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1046 1854 231 59 8 chr12 60437416 60437804 -60819726 - MTD LTR MaLR -8 411 4 1 1046 1661 188 37 26 chr12 60438082 60438431 -60819099 + RLTR12B LTR ERVK 176 528 0 1 1046 1749 153 54 16 chr12 60438431 60438744 -60818786 + L1_Mur3 LINE L1 4842 5166 -714 1 1046 967 246 65 16 chr12 60438739 60438987 -60818543 + Lx6 LINE L1 6946 7205 -255 1 1046 2038 118 18 99 chr12 60438991 60439376 -60818154 - ORR1B1 LTR MaLR 0 394 41 1 1046 904 225 22 26 chr12 60439386 60439614 -60817916 + Lx7 LINE L1 7470 7696 0 1 1046 257 222 0 18 chr12 60439868 60439923 -60817607 + MER31A LTR ERV1 1 54 -412 1 1046 466 278 0 25 chr12 60439925 60440043 -60817487 - PB1D7 SINE Alu -1 119 5 1 1046 203 239 0 21 chr12 60440058 60440105 -60817425 + CT-rich Low_complexity Low_complexity 2 47 0 1 1046 571 277 22 0 chr12 60440105 60440242 -60817288 - B1F1 SINE Alu -5 144 5 1 1046 458 319 85 42 chr12 60440243 60440589 -60816941 + MER31A LTR ERV1 46 405 -61 1 1046 195 383 83 21 chr12 60440852 60441092 -60816438 + L2 LINE L2 2681 2935 -484 1 1046 340 235 75 47 chr12 60441263 60441370 -60816160 + MER31A LTR ERV1 7 116 -369 1 1046 761 330 105 30 chr12 60442495 60442870 -60814660 + MLT1E1A LTR MaLR 129 567 -113 1 1046 539 206 0 10 chr12 60443699 60443797 -60813733 - B3 SINE B2 -6 210 114 1 1046 255 260 69 10 chr12 60443825 60443926 -60813604 - L1MA5 LINE L1 -379 5921 5815 1 1046 513 340 7 0 chr12 60444434 60444587 -60812943 + RSINE1 SINE B4 10 163 -2 1 1046 24 0 0 0 chr12 60444738 60444762 -60812768 + AT_rich Low_complexity Low_complexity 1 24 0 1 1046 372 213 121 50 chr12 60444763 60444862 -60812668 - PB1D10 SINE Alu -1 116 11 1 1046 329 360 41 78 chr12 60444909 60445177 -60812353 + Tigger10 DNA Tigger 338 595 -1248 1 1046 376 214 0 0 chr12 60445438 60445508 -60812022 - B3 SINE B2 -84 132 63 1 1046 1532 243 42 8 chr12 60445508 60445945 -60811585 - Lx5 LINE L1 -696 6764 6098 1 1046 332 238 25 0 chr12 60446021 60446101 -60811429 - RLTR15 LTR ERVK -89 270 189 1 1046 2551 147 60 2 chr12 60446132 60446569 -60810961 - Lx5 LINE L1 -59 5818 5357 1 1046 623 279 62 12 chr12 60446638 60446798 -60810732 + B4A SINE B4 2 169 -123 1 1046 324 266 0 0 chr12 60446810 60446874 -60810656 + B4A SINE B4 219 282 -10 1 1046 201 121 0 0 chr12 60446879 60446912 -60810618 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1046 888 274 181 23 chr12 60447288 60447683 -60809847 + RCHARR1 DNA MER1_type 5 461 -513 1 1046 679 204 34 0 chr12 60447683 60447830 -60809700 + RCHARR1 DNA MER1_type 748 899 -75 1 1046 362 339 18 0 chr12 60447907 60448019 -60809511 + B1_Mur1 SINE Alu 35 148 -1 1 1046 9157 9 2 0 chr12 60448316 60449566 -60807964 - L1Md_T LINE L1 0 6582 5374 1 1046 243 0 0 0 chr12 60449902 60449929 -60807601 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1 1046 4837 138 22 21 chr12 60449931 60449971 -60807559 - Lx4B LINE L1 -18 7040 7008 1 1046 2526 107 3 0 chr12 60449971 60450297 -60807233 + ORR1A2 LTR MaLR 1 327 0 1 1046 4837 138 22 21 chr12 60450297 60451023 -60806507 - Lx4B LINE L1 -51 7007 6273 1 1046 1373 102 32 5 chr12 60451672 60451860 -60805670 - B2_Mm2 SINE B2 0 195 3 1 1046 294 309 49 49 chr12 60452240 60452424 -60805106 - MurSatRep1 Unknown Unknown -216 1921 1738 1 1046 313 250 22 77 chr12 60452565 60452656 -60804874 + B4A SINE B4 44 129 -163 1 1046 391 292 9 45 chr12 60452668 60452755 -60804775 + B4A SINE B4 186 269 -23 1 1046 324 94 0 0 chr12 60452755 60452808 -60804722 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1046 391 292 9 45 chr12 60452808 60452831 -60804699 + B4A SINE B4 270 292 0 1 1046 607 296 104 22 chr12 60452917 60453187 -60804343 - MLT1B LTR MaLR -46 344 53 1 1046 389 226 37 19 chr12 60453553 60453661 -60803869 - L1M4b LINE L1 -4925 2409 2300 1 1046 2041 275 90 53 chr12 60454639 60455370 -60802160 - Lx8 LINE L1 -699 6774 6017 1 1046 360 0 0 0 chr12 60456639 60456679 -60800851 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1046 270 0 0 0 chr12 60456679 60456708 -60800822 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1046 271 300 0 0 chr12 60456715 60456795 -60800735 - L1MC4 LINE L1 -148 7894 7815 1 1046 189 74 0 0 chr12 60456856 60456883 -60800647 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1046 5701 139 40 20 chr12 60456948 60457540 -60799990 + RMER12B LTR ERVK 5 596 -808 1 1046 459 0 0 0 chr12 60457540 60457591 -60799939 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1046 5701 139 40 20 chr12 60457591 60458009 -60799521 + RMER12B LTR ERVK 597 1034 -370 1 1046 35143 54 5 16 chr12 60458009 60460057 -60797473 - L1Md_F2 LINE L1 -19 6563 4535 1 1046 4283 32 0 0 chr12 60460057 60460527 -60797003 - L1Md_T LINE L1 0 6582 6113 1 1046 35143 68 6 28 chr12 60460527 60462095 -60795435 - L1Md_F2 LINE L1 -1349 4534 2998 1 1046 2120 95 50 19 chr12 60462095 60462416 -60795114 - L1Md_F2 LINE L1 0 6582 6252 1 1046 35143 111 30 41 chr12 60462416 60465238 -60792292 - L1Md_F2 LINE L1 -2886 2997 215 1 1046 2789 141 11 24 chr12 60465241 60465692 -60791838 - Lx LINE L1 -4 6650 6206 1 1046 1582 260 35 11 chr12 60465746 60466116 -60791414 + MTD LTR MaLR 41 419 0 1 1046 762 232 52 101 chr12 60466116 60466382 -60791148 + MTD-int LTR MaLR 1 258 -1000 1 1046 1146 132 46 0 chr12 60466382 60466556 -60790974 + B2_Mm2 SINE B2 2 183 -12 1 1046 762 232 52 101 chr12 60466556 60466577 -60790953 + MTD-int LTR MaLR 259 274 -984 1 1046 289 99 416 10 chr12 60466587 60466688 -60790842 + B2_Mm2 SINE B2 47 188 -7 1 1046 1358 275 76 90 chr12 60466699 60467343 -60790187 + MTD-int LTR MaLR 252 886 -212 1 1046 1367 209 17 33 chr12 60467380 60467682 -60789848 + L1VL4 LINE L1 345 641 -5661 1 1046 2025 81 0 0 chr12 60467682 60467930 -60789600 + L1_Mus2 LINE L1 6318 6565 -1 1 1046 1880 131 3 0 chr12 60467992 60468298 -60789232 + MusHAL1 LINE L1 551 857 -1855 1 1046 10442 23 0 0 chr12 60468329 60469516 -60788014 + L1Md_T LINE L1 4400 5586 -297 1 1046 9087 30 0 0 chr12 60469516 60470512 -60787018 + L1Md_T LINE L1 5587 6582 0 1 1046 13016 82 13 12 chr12 60470526 60472370 -60785160 + MusHAL1 LINE L1 866 2710 -2 1 1046 842 254 181 11 chr12 60472518 60472877 -60784653 - L1MC1 LINE L1 -16 6317 5898 1 1046 467 180 99 0 chr12 60472879 60472990 -60784540 - B2_Mm2 SINE B2 -11 184 63 1 1046 1434 251 34 31 chr12 60473537 60473886 -60783644 - MTEa LTR MaLR -21 358 9 1 1046 532 294 36 88 chr12 60474249 60474443 -60783087 - B4A SINE B4 0 292 109 1 1046 353 332 88 55 chr12 60474512 60474608 -60782922 - L1MD LINE L1 -2360 3786 3687 1 1046 442 284 113 26 chr12 60474608 60474803 -60782727 - B3 SINE B2 -4 212 1 1 1046 353 332 88 55 chr12 60474803 60475060 -60782470 - L1MD LINE L1 -2460 3686 3420 1 1046 856 194 14 0 chr12 60475060 60475199 -60782331 + B1_Mur1 SINE Alu 3 143 -6 1 1046 353 332 88 55 chr12 60475199 60475264 -60782266 - L1MD LINE L1 -2727 3419 3353 1 1046 481 369 36 56 chr12 60475969 60476273 -60781257 - LTR16D LTR ERVL -306 345 48 1 1046 343 366 0 10 chr12 60477032 60477134 -60780396 - MLT1N2 LTR MaLR -109 453 353 1 1046 234 135 0 0 chr12 60477345 60477382 -60780148 - L1MA6 LINE L1 -9 6291 6255 1 1046 399 376 83 80 chr12 60477667 60478028 -60779502 + MLT1N2 LTR MaLR 80 441 -121 1 1046 547 289 91 30 chr12 60478332 60478596 -60778934 + ERVL-E-int LTR ERVL 304 583 -5084 1 1046 267 273 145 13 chr12 60479917 60480069 -60777461 - Lx8 LINE L1 -6 7467 7296 1 1046 2514 211 70 29 chr12 60480177 60480371 -60777159 - RMER1B Other Other -11 1055 855 1 1046 1196 89 0 0 chr12 60480371 60480517 -60777013 - B1_Mm SINE Alu -1 146 1 1 1046 2514 211 70 29 chr12 60480517 60480532 -60776998 - RMER1B Other Other -212 854 846 1 1046 2891 61 3 24 chr12 60480532 60480901 -60776629 - L1_Mus1 LINE L1 0 6567 6207 1 1046 2514 211 70 29 chr12 60480901 60481247 -60776283 - RMER1B Other Other -221 845 476 1 1046 933 251 230 6 chr12 60481303 60481655 -60775875 - Lx9 LINE L1 -314 7330 6900 1 1046 426 165 0 0 chr12 60483143 60483222 -60774308 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1046 447 19 0 0 chr12 60483222 60483274 -60774256 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1046 276 300 24 24 chr12 60483286 60483368 -60774162 + ID2 SINE ID 2 83 0 1 1046 191 103 26 0 chr12 60483368 60483407 -60774123 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1046 24 32 0 0 chr12 60483908 60483939 -60773591 + AT_rich Low_complexity Low_complexity 1 31 0 1 1046 186 133 0 0 chr12 60484373 60484403 -60773127 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1046 1457 167 8 0 chr12 60485584 60485823 -60771707 + Lx4B LINE L1 6391 6631 -427 1 1046 1173 259 39 66 chr12 60486141 60486476 -60771054 + MTEa LTR MaLR 1 326 -53 1 1046 867 184 25 61 chr12 60486476 60486496 -60771034 - Lx4B LINE L1 -4 7054 7038 1 1046 1197 68 0 0 chr12 60486496 60486673 -60770857 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 1 1046 333 0 0 0 chr12 60486674 60486711 -60770819 + (CTAAT)n Simple_repeat Simple_repeat 2 38 0 1 1046 3402 193 43 6 chr12 60486711 60487554 -60769976 - Lx4B LINE L1 -21 7037 6080 1 1046 809 250 96 44 chr12 60487560 60487832 -60769698 - RMER1C Other Other 0 1342 1057 1 1046 577 322 50 17 chr12 60487822 60488062 -60769468 - RMER1B Other Other -670 396 149 1 1046 335 353 25 0 chr12 60488274 60488393 -60769137 - RMER1B Other Other -913 153 32 1 1046 358 121 88 29 chr12 60489050 60489118 -60768412 + B1_Mur2 SINE Alu 53 124 -25 1 1046 1121 216 157 72 chr12 60489220 60489595 -60767935 + MTD LTR MaLR 2 408 -11 1 1046 708 238 64 10 chr12 60489667 60489871 -60767659 - L1MA4 LINE L1 -370 5930 5716 1 1046 1120 231 53 63 chr12 60491075 60491593 -60765937 - MT2A LTR ERVL -11 522 3 1 1046 2325 297 38 37 chr12 60492198 60492821 -60764709 + Lx8 LINE L1 6361 6986 -487 1 1046 2866 35 28 0 chr12 60492821 60493139 -60764391 + IAPLTR2b LTR ERVK 1 327 0 1 1046 2325 297 38 37 chr12 60493139 60493278 -60764252 + Lx8 LINE L1 6987 7124 -349 1 1046 234 259 13 97 chr12 60493275 60493429 -60764101 + Lx8 LINE L1 7333 7473 0 1 1046 330 299 141 5 chr12 60493567 60493759 -60763771 + L1MA6 LINE L1 6017 6234 -66 1 1046 187 331 69 75 chr12 60494565 60494725 -60762805 + L2a LINE L2 3171 3329 -46 1 1046 1205 115 63 0 chr12 60495934 60496108 -60761422 - B2_Mm2 SINE B2 -10 185 1 1 1046 189 311 79 26 chr12 60496404 60496480 -60761050 + L2a LINE L2 3342 3421 -5 1 1046 219 309 164 10 chr12 60496841 60496987 -60760543 - L2b LINE L2 -198 3189 3020 1 1046 492 160 17 8 chr12 60497378 60497498 -60760032 + G-rich Low_complexity Low_complexity 5 125 0 1 1046 207 0 0 0 chr12 60497606 60497629 -60759901 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1046 466 230 9 9 chr12 60497726 60497840 -60759690 + MTD LTR MaLR 95 208 -211 1 1046 3411 160 87 26 chr12 60497840 60498541 -60758989 - L1_Rod LINE L1 -2875 2972 2229 1 1046 8462 45 2 1 chr12 60498579 60499918 -60757612 - L1Md_F3 LINE L1 -1 6583 5241 1 1046 750 55 0 0 chr12 60499909 60500000 -60757530 - L1Md_F3 LINE L1 -905 4978 4888 1 1046 17504 113 36 12 chr12 60500000 60504325 -60753205 - L1Md_A LINE L1 -996 4887 245 1 1046 864 159 85 6 chr12 60504328 60504505 -60753025 - L1_Rod LINE L1 -3606 2241 2051 2 1046 1065 181 56 133 chr12 60504558 60504882 -60752648 - Lx4B LINE L1 -2 7056 6758 3 1046 3635 187 56 16 chr12 60504882 60505790 -60751740 - L1_Rod LINE L1 -3782 2065 1111 2 1046 1603 149 17 24 chr12 60505790 60506078 -60751452 - L1Md_F3 LINE L1 -14 6570 6285 4 1046 3224 206 119 5 chr12 60506078 60506607 -60750923 - L1_Rod LINE L1 -6498 1110 516 2 1046 502 278 68 0 chr12 60506626 60506759 -60750771 - B3 SINE B2 0 216 75 5 1046 604 301 49 18 chr12 60506804 60507038 -60750492 - B4 SINE B4 -48 244 7 6 1046 3028 228 91 50 chr12 60507658 60507846 -60749684 + RMER1B Other Other 168 410 -656 7 1046 3834 78 6 12 chr12 60507846 60508341 -60749189 - L1Md_F2 LINE L1 0 6582 6091 8 1046 3028 199 86 35 chr12 60508341 60508933 -60748597 + RMER1B Other Other 411 1049 -17 7 1046 255 93 0 0 chr12 60509273 60509316 -60748214 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1046 200 323 0 0 chr12 60510388 60510450 -60747080 + MIRm SINE MIR 98 159 -117 1 1046 687 314 81 30 chr12 60510789 60511121 -60746409 - MLT1E1 LTR MaLR 0 654 306 1 1046 819 237 56 5 chr12 60511870 60512065 -60745465 + ID_B1 SINE B4 1 205 -19 1 1046 561 228 48 60 chr12 60512877 60513045 -60744485 + MLT1A0 LTR MaLR 34 199 -166 1 1046 1378 103 16 0 chr12 60513232 60513417 -60744113 + B2_Mm1t SINE B2 2 189 -4 1 1046 332 269 0 49 chr12 60514729 60514811 -60742719 - RSINE1 SINE B4 0 165 88 1 1046 246 341 95 28 chr12 60514868 60515079 -60742451 - L2 LINE L2 -936 2483 2259 1 1046 225 0 0 0 chr12 60516846 60516871 -60740659 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1046 268 273 12 61 chr12 60516887 60516969 -60740561 + MIRb SINE MIR 23 100 -168 1 1046 315 0 0 0 chr12 60517245 60517280 -60740250 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 1046 269 25 75 0 chr12 60517280 60517320 -60740210 + (GGAGAA)n Simple_repeat Simple_repeat 3 45 0 2 1046 642 301 99 73 chr12 60518581 60518964 -60738566 - MLT2C1 LTR ERVL -1 396 4 2 1046 582 244 179 46 chr12 60519009 60519249 -60738281 + Lx8 LINE L1 7199 7470 -3 2 1046 224 273 0 0 chr12 60519275 60519319 -60738211 + (CGTG)n Simple_repeat Simple_repeat 4 47 0 2 1046 369 271 103 44 chr12 60520042 60520362 -60737168 - L1ME3B LINE L1 -148 6092 5754 2 1046 212 143 0 0 chr12 60520656 60520691 -60736839 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 2 1046 3417 18 70 0 chr12 60520816 60521199 -60736331 - L1Md_F3 LINE L1 0 6584 6175 2 1046 279 190 0 0 chr12 60522568 60522626 -60734904 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1046 347 253 244 12 chr12 60522737 60522901 -60734629 - B3 SINE B2 -13 203 2 2 1046 743 261 0 0 chr12 60522902 60523044 -60734486 - B4A SINE B4 -60 232 91 2 1046 26 30 0 0 chr12 60523046 60523079 -60734451 + AT_rich Low_complexity Low_complexity 1 33 0 3 1046 1711 169 75 72 chr12 60523113 60523276 -60734254 + ORR1C1 LTR MaLR 1 169 -209 3 1046 423 0 0 0 chr12 60523276 60523323 -60734207 + (TTTTA)n Simple_repeat Simple_repeat 5 51 0 3 1046 1711 169 75 72 chr12 60523323 60523534 -60733996 + ORR1C1 LTR MaLR 170 375 -3 3 1046 261 0 0 0 chr12 60523585 60523614 -60733916 + (TTA)n Simple_repeat Simple_repeat 1 29 0 3 1046 814 296 20 0 chr12 60523615 60523868 -60733662 - Lx9 LINE L1 -128 7516 7259 3 1046 995 285 83 58 chr12 60523872 60524304 -60733226 + Lx9 LINE L1 6821 7263 -381 3 1046 423 270 0 0 chr12 60524310 60524399 -60733131 - B1_Mur1 SINE Alu -37 112 24 3 1046 5686 173 49 20 chr12 60524411 60524713 -60732817 + Lx4B LINE L1 5950 6257 -801 3 1046 3322 64 5 0 chr12 60524713 60525105 -60732425 + MTA_Mm LTR MaLR 1 394 -2 3 1046 5686 173 49 20 chr12 60525105 60525617 -60731913 + Lx4B LINE L1 6258 6786 -272 3 1046 2642 68 0 60 chr12 60525617 60525964 -60731566 - ORR1A3 LTR MaLR 0 326 1 3 1046 5686 173 49 20 chr12 60525964 60526223 -60731307 + Lx4B LINE L1 6787 7055 -3 3 1046 505 328 101 40 chr12 60526223 60526668 -60730862 - L1ME2 LINE L1 -137 6027 5556 3 1046 264 111 0 0 chr12 60526952 60526997 -60730533 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 4 1046 483 69 0 0 chr12 60527018 60527090 -60730440 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1046 471 35 0 0 chr12 60527090 60527146 -60730384 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1046 192 77 0 0 chr12 60527283 60527309 -60730221 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1046 23 0 0 0 chr12 60528877 60528900 -60728630 + AT_rich Low_complexity Low_complexity 1 23 0 4 1046 1753 94 0 0 chr12 60529192 60529416 -60728114 - L1Md_F2 LINE L1 -11 6571 6348 4 1046 19400 73 1 0 chr12 60529417 60531918 -60725612 + L1Md_F2 LINE L1 3082 5585 -298 4 1046 7762 98 0 4 chr12 60531919 60532919 -60724611 + L1Md_F2 LINE L1 5587 6582 0 4 1046 897 244 50 0 chr12 60532937 60533138 -60724392 - B3 SINE B2 -5 211 1 4 1046 30 0 0 0 chr12 60533587 60533617 -60723913 + AT_rich Low_complexity Low_complexity 1 30 0 4 1046 186 43 0 0 chr12 60534574 60534597 -60722933 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 1046 898 204 29 6 chr12 60535150 60535323 -60722207 - Lx4B LINE L1 -17 7041 6865 5 1046 286 248 62 8 chr12 60535347 60535477 -60722053 + L1MB5 LINE L1 5318 5454 -724 5 1046 1036 285 94 23 chr12 60535570 60535997 -60721533 + L1MB5 LINE L1 5621 6077 -97 5 1046 255 388 134 29 chr12 60536100 60536376 -60721154 + L4 LINE RTE 1098 1402 -627 5 1046 2547 198 74 14 chr12 60536741 60537252 -60720278 - Lx5 LINE L1 -1 7049 6508 5 1046 3162 158 54 22 chr12 60537240 60537836 -60719694 - Lx5 LINE L1 -741 6309 5695 5 1046 3587 20 0 0 chr12 60537855 60538246 -60719284 - L1Md_A LINE L1 -1 6581 6191 5 1046 396 0 0 0 chr12 60538381 60538425 -60719105 + (TTTC)n Simple_repeat Simple_repeat 4 47 0 5 1046 781 79 0 0 chr12 60538443 60538544 -60718986 - B1_Mm SINE Alu 0 147 47 5 1046 293 262 0 67 chr12 60538473 60538563 -60718967 - RLTR25B LTR ERVK -515 513 430 5 1046 432 0 0 0 chr12 60538646 60538694 -60718836 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1046 1976 128 3 27 chr12 60538755 60539051 -60718479 - Lx4A LINE L1 0 7058 6770 5 1046 1130 286 58 46 chr12 60539051 60539483 -60718047 - Lx9 LINE L1 -222 7422 6986 6 1046 1720 267 34 16 chr12 60539450 60539895 -60717635 - Lx9 LINE L1 -820 6824 6372 6 1046 465 198 0 0 chr12 60539922 60540028 -60717502 + CT-rich Low_complexity Low_complexity 1 106 0 6 1046 584 305 67 6 chr12 60540041 60540202 -60717328 - ID_B1 SINE B4 -26 198 28 6 1046 1786 211 30 22 chr12 60540202 60540565 -60716965 - ORR1C1 LTR MaLR 0 378 13 6 1046 4519 53 2 2 chr12 60540587 60541114 -60716416 - L1Md_F3 LINE L1 -15 6569 6043 6 1046 2992 42 0 3 chr12 60541344 60541682 -60715848 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1046 56854 22 10 7 chr12 60541682 60548134 -60709396 + IAPEz-int LTR ERVK 8 6481 0 6 1046 2974 42 0 3 chr12 60548134 60548472 -60709058 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1046 1641 247 31 60 chr12 60548875 60549188 -60708342 + Lx7 LINE L1 6948 7254 -442 6 1046 180 0 0 0 chr12 60549188 60549208 -60708322 + (TAGG)n Simple_repeat Simple_repeat 3 22 0 6 1046 1641 247 31 60 chr12 60549208 60549222 -60708308 + Lx7 LINE L1 7255 7260 -436 6 1046 617 168 19 0 chr12 60549222 60549329 -60708201 - Lx4A LINE L1 -2 7056 6948 6 1046 1641 247 31 60 chr12 60549329 60549479 -60708051 + Lx7 LINE L1 7261 7411 -285 6 130 34628 73 7 3 chr12 60549477 60555666 -60701864 - L1Md_F2 LINE L1 0 6582 366 7 1047 240 215 25 25 chr12 60555671 60555752 -60701778 + T-rich Low_complexity Low_complexity 4 84 0 7 1047 432 0 0 0 chr12 60555757 60555805 -60701725 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1047 621 0 0 0 chr12 60555817 60555886 -60701644 + (GAA)n Simple_repeat Simple_repeat 1 69 0 7 1047 254 276 20 10 chr12 60555886 60555985 -60701545 + Lx7 LINE L1 7589 7688 -8 6 1047 435 19 0 0 chr12 60556207 60556259 -60701271 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1047 273 89 0 0 chr12 60556259 60556304 -60701226 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1047 225 267 48 19 chr12 60556317 60556420 -60701110 + Lx8 LINE L1 7365 7470 -3 7 1047 301 346 56 0 chr12 60558938 60559045 -60698485 + MIR SINE MIR 20 132 -130 7 1047 288 390 0 0 chr12 60559069 60559164 -60698366 - PB1D10 SINE Alu -17 100 6 7 1047 967 171 116 25 chr12 60559407 60559569 -60697961 + B3 SINE B2 1 183 -33 7 1047 306 87 0 0 chr12 60559569 60559615 -60697915 + (CATA)n Simple_repeat Simple_repeat 2 47 0 8 1047 967 171 116 25 chr12 60559615 60559650 -60697880 + B3 SINE B2 184 216 0 7 1047 1196 266 66 110 chr12 60559982 60560484 -60697046 - Lx8 LINE L1 -244 7229 6750 8 1047 461 17 17 0 chr12 60560809 60560867 -60696663 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 1047 564 325 65 32 chr12 60561998 60562487 -60695043 + MLT1G1 LTR MaLR 1 579 0 8 1047 210 321 0 0 chr12 60562807 60562863 -60694667 + MIR3 SINE MIR 128 183 -25 8 1047 204 321 49 12 chr12 60563363 60563445 -60694085 + MIRb SINE MIR 4 88 -180 8 1047 566 276 121 30 chr12 60563661 60563807 -60693723 + B3 SINE B2 1 159 -57 8 1047 814 80 49 0 chr12 60563807 60563970 -60693560 + (CA)n Simple_repeat Simple_repeat 2 172 0 8 1047 566 276 121 30 chr12 60563970 60564021 -60693509 + B3 SINE B2 160 216 0 8 1047 3070 54 72 3 chr12 60564392 60564766 -60692764 - MTB LTR MaLR 0 400 1 8 1047 940 56 64 0 chr12 60564790 60564915 -60692615 + B1_Mm SINE Alu 15 147 0 8 1047 351 241 38 12 chr12 60564928 60565008 -60692522 - PB1D10 SINE Alu -12 105 24 9 1047 646 241 39 83 chr12 60565122 60565303 -60692227 - B3 SINE B2 -3 213 41 9 1047 831 158 14 14 chr12 60565919 60566060 -60691470 + B1_Mur4 SINE Alu 9 149 -1 9 1047 24 53 0 0 chr12 60566365 60566403 -60691127 + AT_rich Low_complexity Low_complexity 1 38 0 9 1047 6048 108 41 75 chr12 60569075 60570086 -60687444 + Lx3B LINE L1 5995 6970 -3 9 1047 453 19 0 0 chr12 60570095 60570149 -60687381 + (CTA)n Simple_repeat Simple_repeat 3 56 0 9 1047 22 35 0 0 chr12 60570156 60570185 -60687345 + AT_rich Low_complexity Low_complexity 1 29 0 9 1047 802 285 25 48 chr12 60571132 60571428 -60686102 + RLTR12B LTR ERVK 13 311 -257 9 1047 1991 146 50 0 chr12 60571474 60571817 -60685713 + L1_Mur2 LINE L1 5083 5442 -435 9 1047 3659 173 36 11 chr12 60571903 60572546 -60684984 + Lx5 LINE L1 6392 7050 0 9 1047 428 340 42 28 chr12 60573474 60573689 -60683841 - MIRb SINE MIR -32 236 19 1 1047 3563 268 93 78 chr12 60574059 60575278 -60682252 + Lx5 LINE L1 5795 7032 -18 1 1047 252 297 19 125 chr12 60575312 60575416 -60682114 + MTB LTR MaLR 182 274 -126 1 1047 1088 179 25 5 chr12 60575423 60575625 -60681905 - L1_Mus4 LINE L1 -12 6624 6419 1 1047 3751 51 11 4 chr12 60575625 60576096 -60681434 + L1Md_F2 LINE L1 5113 5586 -297 1 1047 8475 56 0 7 chr12 60576097 60577099 -60680431 + L1Md_F2 LINE L1 5588 6582 0 1 1047 1967 50 0 4 chr12 60577104 60577345 -60680185 - L1_Mus4 LINE L1 -211 6425 6186 1 1047 709 112 8 31 chr12 60577436 60577565 -60679965 - Lx4A LINE L1 -1 7057 6932 1 1047 294 303 142 43 chr12 60577714 60577876 -60679654 - MIRb SINE MIR -28 240 63 1 1047 438 20 0 0 chr12 60577888 60577939 -60679591 + (TCTCC)n Simple_repeat Simple_repeat 4 54 0 1 1047 1320 23 23 6 chr12 60577939 60578113 -60679417 + (TCCCC)n Simple_repeat Simple_repeat 1 178 0 1 1047 551 108 128 23 chr12 60578148 60578281 -60679249 - Lx7 LINE L1 -161 7535 7389 1 1047 432 0 0 0 chr12 60578285 60578333 -60679197 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1 1047 2967 141 102 70 chr12 60578333 60578813 -60678717 - RLTR26 LTR ERVK -5 637 166 1 1047 747 52 0 0 chr12 60578813 60578909 -60678621 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 1047 2967 141 102 70 chr12 60578909 60579045 -60678485 - RLTR26 LTR ERVK -477 165 1 1 1047 277 234 31 0 chr12 60579071 60579135 -60678395 - Lx7 LINE L1 -583 7113 7048 1 1047 701 129 60 0 chr12 60579143 60579259 -60678271 - URR1B DNA MER1_type 0 225 103 1 1047 272 226 0 0 chr12 60579304 60579357 -60678173 - Lx6 LINE L1 -421 7039 6987 1 1047 4615 194 27 36 chr12 60579384 60580334 -60677196 - Lx7 LINE L1 -643 7053 6112 1 1047 486 0 0 0 chr12 60580897 60580951 -60676579 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1 1047 426 20 0 0 chr12 60580951 60581001 -60676529 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1047 715 220 0 30 chr12 60581009 60581140 -60676390 - RSINE1 SINE B4 -35 130 4 1 1047 286 291 41 33 chr12 60581144 60581265 -60676265 + MLT1A0 LTR MaLR 27 148 -217 1 1047 27 0 0 0 chr12 60582115 60582142 -60675388 + AT_rich Low_complexity Low_complexity 1 27 0 1 1047 257 323 16 0 chr12 60582498 60582560 -60674970 + RSINE1 SINE B4 16 78 -87 1 1047 567 43 0 0 chr12 60582567 60582637 -60674893 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1047 2125 249 76 43 chr12 60582692 60583430 -60674100 - Lx9 LINE L1 -5 7639 6878 1 1047 402 169 65 48 chr12 60583487 60583611 -60673919 - Lx9 LINE L1 -2 7642 7517 1 1047 798 41 0 0 chr12 60583613 60583711 -60673819 + (CA)n Simple_repeat Simple_repeat 2 99 0 1 1047 1150 253 28 59 chr12 60583719 60584042 -60673488 - Lx9 LINE L1 -357 7287 6975 1 1047 208 261 27 68 chr12 60586051 60586125 -60671405 - MIRm SINE MIR -139 137 67 1 1047 206 219 0 40 chr12 60590085 60590161 -60667369 + A-rich Low_complexity Low_complexity 4 76 0 1 1047 580 305 29 0 chr12 60591445 60591619 -60665911 + L2 LINE L2 2901 3079 -340 1 1047 474 65 0 0 chr12 60591675 60591737 -60665793 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1047 764 281 180 9 chr12 60591802 60592118 -60665412 - ORR1D2 LTR MaLR 0 370 1 1 1047 975 18 0 0 chr12 60592237 60592350 -60665180 + (TTC)n Simple_repeat Simple_repeat 2 114 0 1 1047 1157 84 14 7 chr12 60592351 60592495 -60665035 - B1_Mm SINE Alu 0 147 3 1 1047 315 71 0 0 chr12 60592586 60592628 -60664902 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1047 414 95 0 0 chr12 60592628 60592691 -60664839 - L1Md_F2 LINE L1 -23 6559 6497 1 1047 761 101 16 48 chr12 60592680 60592805 -60664725 - L1_Mus1 LINE L1 -114 6453 6333 1 1047 216 67 0 0 chr12 60592825 60592855 -60664675 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1047 489 297 124 65 chr12 60592898 60593204 -60664326 - MLT1H2 LTR MaLR -159 330 7 1 1047 215 79 26 0 chr12 60594919 60594957 -60662573 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1 1047 321 260 42 0 chr12 60595383 60595479 -60662051 + L1M3 LINE L1 4620 4719 -1421 1 1047 535 235 8 8 chr12 60595509 60595642 -60661888 - Lx9 LINE L1 -7 7637 7505 1 1047 273 172 17 0 chr12 60595645 60595703 -60661827 - Lx9 LINE L1 -286 7358 7300 1 1047 27 29 0 0 chr12 60595850 60595884 -60661646 + AT_rich Low_complexity Low_complexity 1 34 0 1 1047 270 0 0 0 chr12 60596130 60596160 -60661370 + (CAAAC)n Simple_repeat Simple_repeat 1 30 0 1 1047 300 336 19 0 chr12 60596208 60596312 -60661218 - Lx7 LINE L1 -398 7298 7193 1 1047 240 362 17 50 chr12 60596320 60596500 -60661030 + MER31B LTR ERV1 217 390 -76 1 1047 779 209 65 13 chr12 60596974 60597129 -60660401 - Lx7 LINE L1 -723 6973 6811 1 1047 776 226 63 37 chr12 60597432 60597685 -60659845 + Lx7 LINE L1 5642 5900 -1573 1 1047 530 366 92 39 chr12 60598112 60598885 -60658645 + L2 LINE L2 2098 2911 -508 1 1047 416 169 117 0 chr12 60599237 60599314 -60658216 - PB1D7 SINE Alu -26 94 9 1 1047 344 267 78 0 chr12 60599314 60599327 -60658203 - ID_B1 SINE B4 -52 172 76 1 1047 36473 46 1 3 chr12 60599476 60604849 -60652681 + L1Md_T LINE L1 133 5589 -297 1 1047 8997 33 0 0 chr12 60604849 60605845 -60651685 + L1Md_T LINE L1 5590 6585 0 1 1047 1946 222 13 16 chr12 60606370 60606823 -60650707 + Lx7 LINE L1 84 535 -7193 1 1047 5508 183 30 13 chr12 60606816 60606891 -60650639 + Lx7 LINE L1 4792 4862 -1018 1 1047 1179 118 96 0 chr12 60606891 60607069 -60650461 - B2_Mm2 SINE B2 0 195 1 1 1047 5508 195 31 30 chr12 60607069 60608522 -60649008 + Lx7 LINE L1 4863 6307 -1389 1 1047 1162 144 36 5 chr12 60608523 60608718 -60648812 - BGLII_Mus LTR ERVK -221 201 1 1 1047 3452 198 103 64 chr12 60608718 60609581 -60647949 + Lx7 LINE L1 6800 7696 0 1 1047 186 43 0 0 chr12 60611648 60611671 -60645859 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 1 1047 198 0 0 0 chr12 60611691 60611713 -60645817 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1047 508 237 76 0 chr12 60611743 60611861 -60645669 - RSINE1 SINE B4 -38 127 1 1 1047 416 305 15 59 chr12 60611861 60611996 -60645534 + MER20 DNA MER1_type 60 188 -31 1 1047 23 33 0 0 chr12 60612468 60612498 -60645032 + AT_rich Low_complexity Low_complexity 1 30 0 1 1047 6519 62 0 21 chr12 60613129 60614030 -60643500 - L1Md_F2 LINE L1 0 6582 5701 1 1047 715 242 64 11 chr12 60614031 60614219 -60643311 - B3 SINE B2 -17 199 2 1 1047 182 197 49 73 chr12 60615344 60615426 -60642104 + L2a LINE L2 3265 3344 -82 1 1047 288 261 11 0 chr12 60615796 60615884 -60641646 - Lx9 LINE L1 -25 7619 7531 1 1047 180 176 0 0 chr12 60615887 60615921 -60641609 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1047 331 355 93 10 chr12 60616149 60616354 -60641176 + MLT1D LTR MaLR 271 492 -13 1 1047 278 212 82 59 chr12 60616843 60616928 -60640602 + MTEa LTR MaLR 293 379 0 1 1047 228 230 0 44 chr12 60617331 60617422 -60640108 + T-rich Low_complexity Low_complexity 2 88 0 1 1047 1759 220 78 5 chr12 60617774 60618157 -60639373 - MTD LTR MaLR -8 411 1 1 1047 396 214 131 0 chr12 60618289 60618373 -60639157 + PB1D10 SINE Alu 26 120 -7 1 1047 189 0 0 0 chr12 60618374 60618395 -60639135 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1047 1018 182 35 0 chr12 60618562 60618765 -60638765 - Lx9 LINE L1 -285 7359 7150 1 1047 351 145 32 0 chr12 60618766 60618828 -60638702 + Lx9 LINE L1 7375 7438 -206 1 1047 186 103 0 0 chr12 60618832 60618861 -60638669 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1047 266 306 38 140 chr12 60618921 60619107 -60638423 - MLT1E2 LTR MaLR -452 175 9 1 1047 23 68 0 0 chr12 60620349 60620393 -60637137 + AT_rich Low_complexity Low_complexity 1 44 0 1 1047 504 206 22 0 chr12 60621090 60621226 -60636304 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 1047 265 388 24 30 chr12 60622100 60622265 -60635265 - L2 LINE L2 -958 2461 2298 1 1047 255 125 0 0 chr12 60622533 60622573 -60634957 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1047 776 262 6 0 chr12 60622575 60622735 -60634795 - B3A SINE B2 -36 162 2 1 1047 440 255 110 68 chr12 60623623 60623859 -60633671 - Charlie2a DNA MER1_type -1164 1697 1452 1 1047 369 43 0 0 chr12 60624099 60624146 -60633384 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1047 375 219 14 0 chr12 60624529 60624602 -60632928 - tRNA-Thr-ACG_ tRNA tRNA -1 76 3 1 1047 257 342 57 44 chr12 60624711 60624870 -60632660 + MIRc SINE MIR 6 166 -102 1 1047 1217 34 0 7 chr12 60625180 60625326 -60632204 + B1_Mus2 SINE Alu 1 145 -2 1 1047 246 62 0 0 chr12 60625327 60625359 -60632171 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1047 250 253 13 0 chr12 60625359 60625434 -60632096 - LTR37B LTR ERV1 -18 450 375 1 1047 466 318 27 0 chr12 60626150 60626298 -60631232 + MamRep1161 DNA TcMar 4 155 -802 1 1047 444 19 0 0 chr12 60626687 60626740 -60630790 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1047 483 264 112 31 chr12 60626749 60626909 -60630621 - B4A SINE B4 -77 215 43 1 1047 28 61 0 0 chr12 60627095 60627144 -60630386 + AT_rich Low_complexity Low_complexity 1 49 0 1 1047 2036 222 18 2 chr12 60627471 60627968 -60629562 - Lx9 LINE L1 0 7644 7140 1 1047 184 340 57 28 chr12 60628228 60628334 -60629196 + MIRb SINE MIR 146 254 -14 1 1047 470 333 81 96 chr12 60629149 60629544 -60627986 + MLT1I LTR MaLR 22 410 -1 1 1047 335 339 121 10 chr12 60629568 60629857 -60627673 - L3 LINE CR1 -160 4329 4009 1 1047 267 341 60 30 chr12 60630412 60630545 -60626985 - RMER30 DNA MER1_type -7 195 59 1 1047 1034 190 72 14 chr12 60630547 60630755 -60626775 - URR1A DNA MER1_type 0 226 7 1 1047 22 35 0 0 chr12 60633864 60633893 -60623637 + AT_rich Low_complexity Low_complexity 1 29 0 1 1047 456 350 71 59 chr12 60634008 60634330 -60623200 + MLT1D LTR MaLR 16 341 -164 1 1047 765 226 138 25 chr12 60634326 60634772 -60622758 - MT2A LTR ERVL -43 558 1 1 1047 825 220 34 108 chr12 60635120 60635407 -60622123 + RMER2 LTR ERV1 1 341 -226 1 1047 727 270 99 25 chr12 60635445 60635858 -60621672 - MT2A LTR ERVL -99 502 1 1 1047 32 75 0 0 chr12 60636343 60636410 -60621120 + AT_rich Low_complexity Low_complexity 1 67 0 2 1047 228 339 15 0 chr12 60636528 60636621 -60620909 + MIR SINE MIR 69 156 -120 2 1047 373 225 14 0 chr12 60636698 60636769 -60620761 - ID4 SINE ID -3 80 9 2 1047 284 301 57 19 chr12 60637518 60637623 -60619907 - Lx8 LINE L1 -748 6725 6617 2 1047 2272 76 12 19 chr12 60637803 60638123 -60619407 - L1_Mus2 LINE L1 0 6566 6249 2 1047 271 215 60 48 chr12 60638350 60638433 -60619097 - MLT1D LTR MaLR -3 502 419 2 1047 2285 254 147 13 chr12 60638455 60639224 -60618306 - Lx8 LINE L1 -219 7254 6383 2 1047 11131 81 10 32 chr12 60641834 60644112 -60613418 - Lx3_Mus LINE L1 -569 6440 4217 2 1047 4014 88 25 5 chr12 60644112 60644683 -60612847 + Lx3_Mus LINE L1 6420 7001 -8 2 1047 253 256 0 43 chr12 60644809 60644903 -60612627 + BLACKJACK DNA AcHobo 2326 2415 -529 2 1047 453 351 92 5 chr12 60644911 60645117 -60612413 + BLACKJACK DNA AcHobo 227 450 -2494 2 1047 380 269 83 0 chr12 60645167 60645312 -60612218 + BLACKJACK DNA AcHobo 1957 2113 -831 2 1047 839 249 12 0 chr12 60645311 60645480 -60612050 - B3A SINE B2 -26 172 2 2 1047 227 258 144 0 chr12 60645491 60645588 -60611942 + BLACKJACK DNA AcHobo 2119 2229 -715 2 1047 739 346 24 60 chr12 60645591 60645621 -60611909 - B4A SINE B4 0 292 271 2 1047 396 0 0 0 chr12 60645621 60645665 -60611865 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1047 739 346 24 60 chr12 60645665 60645932 -60611598 - B4A SINE B4 -22 270 6 2 1047 413 288 70 47 chr12 60645928 60646143 -60611387 + BLACKJACK DNA AcHobo 2233 2452 -492 2 1047 204 40 0 0 chr12 60646374 60646399 -60611131 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 2 1047 226 268 14 0 chr12 60646424 60646495 -60611035 - Lx7 LINE L1 -389 7307 7236 2 1047 2010 169 15 6 chr12 60646570 60646910 -60610620 - ORR1C1 LTR MaLR -35 343 1 2 1047 232 278 64 59 chr12 60647026 60647213 -60610317 + BLACKJACK DNA AcHobo 2661 2848 -96 2 1047 1062 292 35 4 chr12 60647231 60647492 -60610038 + B4A SINE B4 4 272 -20 2 1047 1071 97 0 0 chr12 60648949 60649103 -60608427 + (TCTCC)n Simple_repeat Simple_repeat 3 156 0 2 1047 16542 67 1 3 chr12 60649104 60652221 -60605309 + L1Md_F LINE L1 481 3588 -2295 2 1047 947 80 15 0 chr12 60652221 60652358 -60605172 + (TTTTC)n Simple_repeat Simple_repeat 4 142 0 2 1047 613 133 0 28 chr12 60652358 60652466 -60605064 - Lx LINE L1 -15 6639 6535 2 1047 9987 221 7 85 chr12 60652466 60653311 -60604219 + L1Md_F LINE L1 3584 4199 -1681 2 1047 486 0 0 0 chr12 60653311 60653365 -60604165 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 1047 958 63 71 0 chr12 60653366 60653492 -60604038 - B1_Mm SINE Alu -12 135 1 2 1047 9987 221 7 85 chr12 60653492 60653612 -60603918 + L1Md_F LINE L1 4200 4302 -1578 2 1047 369 0 0 0 chr12 60655614 60655655 -60601875 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1047 619 266 0 14 chr12 60656043 60656184 -60601346 - B1_Mur1 SINE Alu -1 148 10 2 1047 239 256 0 124 chr12 60656108 60656197 -60601333 - MT2B2 LTR ERVL -344 240 163 2 1047 779 252 56 99 chr12 60656355 60656799 -60600731 - L1_Rod LINE L1 -7 5840 5416 2 1047 2920 283 68 22 chr12 60656953 60658016 -60599514 - Lx9 LINE L1 -174 7470 6359 2 1047 2041 150 18 8 chr12 60658043 60658427 -60599103 + L1_Mur3 LINE L1 2306 2693 -3187 2 1047 784 104 40 20 chr12 60658427 60658566 -60598964 + ORR1A2 LTR MaLR 4 169 -225 2 1047 19203 93 4 1 chr12 60658566 60662123 -60595407 + L1_Mus1 LINE L1 2987 6557 -10 2 1047 405 0 0 0 chr12 60662123 60662168 -60595362 + (TAA)n Simple_repeat Simple_repeat 1 45 0 2 1047 1341 104 114 0 chr12 60662168 60662379 -60595151 + ORR1A2 LTR MaLR 93 327 0 2 1047 3251 152 54 16 chr12 60662379 60663081 -60594449 + L1_Mur3 LINE L1 2735 3463 -2417 2 1047 3034 32 0 0 chr12 60663079 60663453 -60594077 - L1Md_T LINE L1 -145 6437 6064 2 1047 763 39 0 0 chr12 60663453 60663555 -60593975 + L1Md_A LINE L1 6481 6582 0 2 1047 207 88 0 0 chr12 60663559 60663593 -60593937 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1047 662 150 15 0 chr12 60663598 60663731 -60593799 + L1_Mur3 LINE L1 3440 3574 -2303 2 1047 505 302 121 72 chr12 60663834 60664166 -60593364 + RLTR26 LTR ERVK 114 461 -181 2 1047 5004 173 36 7 chr12 60664376 60665411 -60592119 + Lx6 LINE L1 3561 4625 -1255 2 1047 1262 168 26 11 chr12 60665413 60665678 -60591852 + Lx6 LINE L1 5648 5916 -1544 2 1047 451 303 70 19 chr12 60665685 60665998 -60591532 - L1_Rod LINE L1 -6767 405 77 2 1047 2085 62 0 0 chr12 60666218 60666494 -60591036 - L1_Mus2 LINE L1 -484 6082 5807 2 1047 3517 80 2 19 chr12 60666494 60667005 -60590525 + L1_Mus2 LINE L1 6086 6566 0 2 1047 379 142 9 36 chr12 60667845 60667955 -60589575 + T-rich Low_complexity Low_complexity 4 110 0 2 1047 1032 108 0 0 chr12 60667960 60668117 -60589413 + (TTCC)n Simple_repeat Simple_repeat 2 158 0 2 1047 467 270 62 9 chr12 60668122 60668234 -60589296 - B1F1 SINE Alu -14 135 18 2 1047 25 65 0 0 chr12 60668621 60668667 -60588863 + AT_rich Low_complexity Low_complexity 1 46 0 2 1047 344 152 17 0 chr12 60668717 60668776 -60588754 + HAL1-3A_ME LINE L1 1975 2034 -824 2 1047 408 20 0 0 chr12 60668786 60668835 -60588695 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1047 195 364 36 48 chr12 60669485 60669637 -60587893 - MIRb SINE MIR -18 244 92 2 1047 1632 271 7 5 chr12 60670010 60670421 -60587109 - MTD LTR MaLR -5 414 3 2 1047 4244 61 0 0 chr12 60670441 60670965 -60586565 - L1_Mus1 LINE L1 -2 6565 6042 2 1047 1123 62 7 7 chr12 60671866 60672012 -60585518 + B1_Mus2 SINE Alu 1 146 -1 2 1047 324 0 0 0 chr12 60672103 60672139 -60585391 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1047 4502 25 0 0 chr12 60672368 60672888 -60584642 - L1Md_A LINE L1 0 6582 6063 2 1047 351 312 62 0 chr12 60673028 60673140 -60584390 + PB1 SINE Alu 1 119 -8 2 1047 695 288 102 26 chr12 60673148 60673569 -60583961 + L1ME3A LINE L1 5493 5945 -228 2 1047 593 265 149 0 chr12 60673651 60673832 -60583698 - B3 SINE B2 -6 210 3 2 1047 1827 172 16 79 chr12 60674131 60674509 -60583021 + ORR1B1 LTR MaLR 41 394 0 2 1047 8657 166 55 105 chr12 60674513 60677095 -60580435 + ORR1B1-int LTR MaLR 5 1771 -192 2 1047 633 238 112 19 chr12 60677134 60677355 -60580175 + ORR1B1 LTR MaLR 163 404 -15 2 1047 671 249 53 12 chr12 60677365 60677536 -60579994 - B3A SINE B2 -18 180 3 2 1047 24 32 0 0 chr12 60678251 60678282 -60579248 + AT_rich Low_complexity Low_complexity 1 31 0 2 1047 273 29 0 0 chr12 60678285 60678319 -60579211 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1047 306 247 79 0 chr12 60678365 60678454 -60579076 - RSINE1 SINE B4 -58 107 12 2 1047 21 0 0 0 chr12 60678715 60678736 -60578794 + AT_rich Low_complexity Low_complexity 1 21 0 2 1047 342 67 0 0 chr12 60678847 60678892 -60578638 + (CATA)n Simple_repeat Simple_repeat 3 47 0 2 1047 1093 274 49 11 chr12 60678963 60679229 -60578301 - B4A SINE B4 -1 291 16 2 1047 439 259 25 25 chr12 60679227 60679346 -60578184 - B4A SINE B4 -172 120 2 2 1047 1237 251 85 107 chr12 60680049 60680176 -60577354 + RMER5 LTR ERV1 15 127 -407 2 1047 468 0 0 0 chr12 60680176 60680228 -60577302 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1047 1112 92 0 0 chr12 60680231 60680373 -60577157 - B1_Mus2 SINE Alu -5 142 1 2 1047 1237 251 85 107 chr12 60680373 60680772 -60576758 + RMER5 LTR ERV1 128 533 -1 2 1047 834 144 29 29 chr12 60682590 60682726 -60574804 + B1_Mus2 SINE Alu 5 140 -7 2 1047 2182 88 39 0 chr12 60684037 60684344 -60573186 - ORR1A2 LTR MaLR -8 319 1 2 1047 5019 172 43 3 chr12 60685121 60685989 -60571541 - RMER19B LTR ERVK 0 902 1 2 1047 197 244 12 0 chr12 60686070 60686156 -60571374 + (CAGGG)n Simple_repeat Simple_repeat 3 89 0 2 130 2723 275 72 25 chr12 60686157 60687083 -60570447 - RCHARR1 DNA MER1_type -1 973 4 2 1048 1687 257 62 46 chr12 60687086 60687552 -60569978 + MT2A LTR ERVL 1 475 -58 2 1048 465 50 0 0 chr12 60687552 60687612 -60569918 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1048 1687 257 62 46 chr12 60687612 60687664 -60569866 + MT2A LTR ERVL 476 527 -6 2 1048 432 351 0 15 chr12 60688918 60689054 -60568476 - B1_Mm SINE Alu -13 134 1 2 1048 2910 88 97 26 chr12 60689401 60689522 -60568008 - L1Md_F2 LINE L1 0 6582 6483 2 1048 189 74 0 0 chr12 60689522 60689549 -60567981 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 2 1048 2910 88 97 26 chr12 60689549 60689657 -60567873 - L1Md_F2 LINE L1 -100 6482 6353 2 1048 225 0 0 0 chr12 60689657 60689682 -60567848 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1048 2910 88 97 26 chr12 60689682 60689939 -60567591 - L1Md_F2 LINE L1 -230 6352 6098 2 1048 23 0 0 0 chr12 60691460 60691483 -60566047 + AT_rich Low_complexity Low_complexity 1 23 0 2 1048 1923 250 92 28 chr12 60691483 60692100 -60565430 - Lx4B LINE L1 -11 7047 6391 2 1048 3774 168 32 23 chr12 60692116 60692579 -60564951 + Lx5 LINE L1 5587 6043 -1007 2 1048 441 0 0 0 chr12 60692579 60692628 -60564902 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1048 3774 163 32 24 chr12 60692628 60692945 -60564585 + Lx5 LINE L1 6044 6352 -698 2 1048 1682 189 56 25 chr12 60693752 60694111 -60563419 - ORR1D2 LTR MaLR 0 370 1 2 1048 6018 92 9 1 chr12 60694287 60695889 -60561641 + L1Md_F2 LINE L1 362 1976 -3907 2 1048 18477 70 3 1 chr12 60695880 60698454 -60559076 + L1Md_F2 LINE L1 3008 5586 -297 2 1048 7912 54 6 0 chr12 60698454 60699442 -60558088 + L1Md_F2 LINE L1 5587 6580 -2 2 1048 681 359 37 26 chr12 60699594 60699866 -60557664 + B4A SINE B4 15 289 -3 2 1048 387 0 0 0 chr12 60699879 60699922 -60557608 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1048 24 0 0 0 chr12 60700749 60700773 -60556757 + AT_rich Low_complexity Low_complexity 1 24 0 2 1048 35656 22 1 8 chr12 60701027 60706209 -60551321 + L1Md_A LINE L1 441 5586 -297 2 1048 8295 42 0 0 chr12 60706209 60707204 -60550326 + L1Md_A LINE L1 5587 6581 -1 2 1048 35656 19 1 1 chr12 60707204 60707235 -60550295 + L1Md_A LINE L1 5587 5613 -270 2 1048 627 259 7 33 chr12 60707849 60707977 -60549553 - ID_B1 SINE B4 0 224 100 2 1048 3278 105 5 90 chr12 60707977 60708544 -60548986 - MURVY-LTR LTR ERV1 0 519 1 2 1048 627 259 7 33 chr12 60708544 60708567 -60548963 - ID_B1 SINE B4 -125 99 77 2 1048 272 234 0 45 chr12 60708632 60708699 -60548831 - U6 snRNA snRNA -38 69 6 2 1048 360 347 31 0 chr12 60708738 60708836 -60548694 - B1F SINE Alu -48 101 1 2 1048 2341 169 19 0 chr12 60709976 60710389 -60547141 + MTC LTR MaLR 1 421 0 2 1048 521 313 86 4 chr12 60711008 60711242 -60546288 - Cheshire DNA MER1_type -2137 283 31 2 1048 720 285 69 36 chr12 60711375 60711652 -60545878 - B4A SINE B4 -6 286 1 2 1048 392 288 35 35 chr12 60711921 60712030 -60545500 + RSINE1 SINE B4 3 111 -54 2 1048 1440 220 161 9 chr12 60712030 60712379 -60545151 - MTD LTR MaLR 0 419 18 2 1048 623 269 7 20 chr12 60712736 60712884 -60544646 + RSINE1 SINE B4 17 162 -3 2 1048 4208 163 46 31 chr12 60714193 60715033 -60542497 + Lx4A LINE L1 6183 7035 -23 2 1048 573 115 0 0 chr12 60715033 60715120 -60542410 + (AGGGGG)n Simple_repeat Simple_repeat 1 87 0 2 1048 567 255 13 51 chr12 60716417 60716574 -60540956 - RMER15 LTR ERVL -2 573 423 2 1048 285 366 30 0 chr12 60716728 60716829 -60540701 + MIR SINE MIR 81 184 -78 3 1048 319 316 0 12 chr12 60717514 60717594 -60539936 - ID4_ SINE ID -2 81 3 3 1048 27 49 0 0 chr12 60718417 60718458 -60539072 + AT_rich Low_complexity Low_complexity 1 41 0 3 1048 580 185 52 0 chr12 60718458 60718593 -60538937 - Lx2A1 LINE L1 -5 7003 6862 3 1048 192 200 12 24 chr12 60718849 60718931 -60538599 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1048 33 0 0 0 chr12 60718941 60718974 -60538556 + AT_rich Low_complexity Low_complexity 1 33 0 3 1048 624 384 107 7 chr12 60719543 60720253 -60537277 - HERV16-int LTR ERVL -1967 3029 2249 3 1048 279 307 98 21 chr12 60720451 60720644 -60536886 - HERV16-int LTR ERVL -3607 1389 1182 3 1048 283 345 11 22 chr12 60721547 60721639 -60535891 - LTR16A LTR ERVL -7 444 354 3 1048 28 0 0 0 chr12 60721946 60721974 -60535556 + AT_rich Low_complexity Low_complexity 1 28 0 3 1048 487 0 32 0 chr12 60722114 60722177 -60535353 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 3 1048 471 236 9 9 chr12 60722177 60722284 -60535246 - PB1D10 SINE Alu -1 116 10 3 1048 874 169 35 0 chr12 60723104 60723246 -60534284 - B1_Mur3 SINE Alu -2 147 1 3 1048 1332 310 113 38 chr12 60724591 60725192 -60532338 - Tigger7 DNA MER2_type -1811 680 35 3 1048 289 335 6 60 chr12 60725592 60725760 -60531770 - Charlie2a DNA MER1_type -2 2859 2701 3 1048 226 283 57 66 chr12 60725820 60725926 -60531604 - Charlie2a DNA MER1_type -272 2589 2485 3 1048 497 211 66 89 chr12 60725935 60726148 -60531382 - Lx9 LINE L1 -8 7636 7429 3 1048 188 122 0 24 chr12 60726162 60726204 -60531326 + (TTATA)n Simple_repeat Simple_repeat 1 41 0 3 1048 2333 195 40 0 chr12 60726222 60726693 -60530837 - Lx9 LINE L1 -220 7424 6935 3 1048 231 322 152 17 chr12 60726898 60727075 -60530455 - Charlie2a DNA MER1_type -582 2279 2079 3 1048 939 250 19 0 chr12 60727077 60727285 -60530245 + B3 SINE B2 1 212 -4 3 1048 275 292 157 10 chr12 60727582 60727786 -60529744 + LTR50 LTR ERVL 538 771 -24 3 1048 380 278 0 40 chr12 60728121 60728222 -60529308 + B3A SINE B2 4 100 -98 3 1048 228 283 123 73 chr12 60728220 60728399 -60529131 - Charlie2a DNA MER1_type -1145 1716 1529 3 1048 1588 181 70 25 chr12 60729014 60729372 -60528158 + ORR1D1 LTR MaLR 1 374 0 3 1048 7360 53 11 9 chr12 60729780 60730857 -60526673 + L1_Mus1 LINE L1 5495 6654 0 3 1048 249 300 140 35 chr12 60730964 60731078 -60526452 - RSINE1 SINE B4 -38 127 2 3 1048 261 269 21 14 chr12 60732740 60732883 -60524647 + (TA)n Simple_repeat Simple_repeat 2 145 0 3 1048 213 225 0 0 chr12 60732919 60732959 -60524571 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 3 1048 629 87 58 0 chr12 60733433 60733536 -60523994 - Lx3C LINE L1 -336 6640 6532 3 1048 1913 121 37 22 chr12 60733538 60733859 -60523671 + Lx3B LINE L1 6648 6973 0 3 1048 483 33 0 0 chr12 60734078 60734139 -60523391 + (CTCA)n Simple_repeat Simple_repeat 2 62 0 3 1048 467 312 133 58 chr12 60734425 60734755 -60522775 - ORR1E LTR MaLR -4 355 1 3 1048 314 281 8 16 chr12 60735110 60735233 -60522297 - L1MA4 LINE L1 -372 5928 5807 3 1048 613 248 36 37 chr12 60735235 60735470 -60522060 + L1_Mur1 LINE L1 5491 5748 -555 3 1048 787 296 57 77 chr12 60735474 60735840 -60521690 - MTEa LTR MaLR -20 359 1 3 1048 1103 61 12 12 chr12 60736474 60736639 -60520891 + L1_Mus3 LINE L1 6474 6638 0 3 1048 293 318 90 36 chr12 60737731 60737842 -60519688 - PB1D10 SINE Alu 0 117 1 3 1048 653 282 20 7 chr12 60737842 60737917 -60519613 - ID SINE ID -142 82 6 3 1048 752 260 166 30 chr12 60738029 60738402 -60519128 - L1MB4 LINE L1 -101 6079 5656 3 1048 288 307 141 9 chr12 60738457 60738677 -60518853 - L1MA4 LINE L1 -732 5571 5323 3 1048 801 217 58 46 chr12 60738734 60738975 -60518555 - RLTR5_Mm LTR ERV1 0 628 385 3 1048 231 271 50 30 chr12 60739126 60739225 -60518305 - L1MA4 LINE L1 -842 5301 5201 3 1048 1144 55 7 0 chr12 60739446 60739592 -60517938 - B1_Mm SINE Alu 0 147 1 3 1048 549 204 25 133 chr12 60739937 60740095 -60517435 - B1F1 SINE Alu -6 143 3 3 1048 429 113 40 20 chr12 60740761 60740860 -60516670 - L1_Mus4 LINE L1 0 6636 6536 3 1048 26 22 0 42 chr12 60741287 60741311 -60516219 + AT_rich Low_complexity Low_complexity 1 23 0 3 1048 365 99 98 12 chr12 60741311 60741393 -60516137 - L1Md_F2 LINE L1 -3 6579 6491 3 1048 26 22 0 42 chr12 60741393 60741416 -60516114 + AT_rich Low_complexity Low_complexity 1 23 0 3 1048 287 333 93 0 chr12 60742949 60743057 -60514473 - L2a LINE L2 -6 3420 3303 3 1048 311 361 29 34 chr12 60743059 60743234 -60514296 + MER5B DNA MER1_type 1 174 -4 3 1048 248 301 14 0 chr12 60743455 60743528 -60514002 + MER5A1 DNA MER1_type 2 75 -91 3 1048 560 222 0 100 chr12 60743530 60743680 -60513850 + B1F2 SINE Alu 1 135 -14 3 1048 189 74 0 0 chr12 60743682 60743709 -60513821 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 1048 297 0 0 0 chr12 60743985 60744018 -60513512 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1048 344 387 9 0 chr12 60744018 60744124 -60513406 - PB1D7 SINE Alu -11 109 3 3 1048 443 267 182 5 chr12 60744158 60744350 -60513180 + MER67C LTR ERV1 8 233 -478 3 1048 504 0 0 0 chr12 60744367 60744423 -60513107 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1048 378 0 0 0 chr12 60744423 60744464 -60513066 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1048 315 0 0 0 chr12 60744505 60744540 -60512990 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1048 486 0 0 0 chr12 60744540 60744593 -60512937 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1048 3692 189 71 8 chr12 60744606 60744634 -60512896 + Lx5 LINE L1 6117 6151 -899 3 1048 333 0 0 0 chr12 60744634 60744671 -60512859 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1048 3692 189 71 8 chr12 60744671 60745393 -60512137 + Lx5 LINE L1 6152 6914 -136 3 1048 598 223 29 7 chr12 60745711 60745851 -60511679 - B1F2 SINE Alu -6 143 1 3 1048 225 307 0 38 chr12 60747201 60747306 -60510224 + (CCGGG)n Simple_repeat Simple_repeat 2 102 0 3 1048 584 307 30 26 chr12 60747377 60747681 -60509849 + L1MB5 LINE L1 5704 6008 -166 3 1048 184 291 0 65 chr12 60748189 60748281 -60509249 - L4 LINE RTE -621 1408 1323 3 1048 210 91 0 0 chr12 60748932 60748965 -60508565 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1048 451 146 19 10 chr12 60748965 60749064 -60508466 - Lx3C LINE L1 -10 6966 6867 3 1048 21925 116 2 22 chr12 60749252 60753170 -60504360 + L1Md_F2 LINE L1 507 4414 -1466 3 1048 2088 111 3 9 chr12 60753170 60753488 -60504042 - IAPLTR2b LTR ERVK -11 316 1 3 1048 21925 116 2 22 chr12 60753488 60754643 -60502887 + L1Md_F2 LINE L1 4415 5568 -312 3 1048 7446 70 7 6 chr12 60754656 60755651 -60501879 + L1Md_F2 LINE L1 5587 6582 0 3 1048 207 0 0 0 chr12 60755656 60755679 -60501851 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1048 562 284 55 32 chr12 60755679 60755897 -60501633 - ID_B1 SINE B4 0 224 2 3 1048 195 367 83 8 chr12 60756318 60756439 -60501091 - MIRb SINE MIR -121 147 18 3 1048 1022 241 162 12 chr12 60756464 60756935 -60500595 - Lx8 LINE L1 -1545 5928 5386 3 1048 557 288 7 0 chr12 60757236 60757375 -60500155 - B1F1 SINE Alu -7 142 3 3 1048 304 223 53 11 chr12 60759565 60759660 -60497870 + Lx7 LINE L1 7237 7335 -361 3 1048 552 303 16 95 chr12 60759872 60760189 -60497341 + B4A SINE B4 1 292 0 3 1048 323 291 140 12 chr12 60761827 60762122 -60495408 - L1ME2 LINE L1 -1632 6153 5822 3 1048 299 301 79 47 chr12 60762247 60762812 -60494718 - L1ME2 LINE L1 -513 5666 5089 3 1048 9876 128 47 54 chr12 60762845 60763338 -60494192 - RLTR22_Mur LTR ERVK -7 1841 1340 3 1048 576 29 0 0 chr12 60763338 60763408 -60494122 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1048 9876 128 47 54 chr12 60763408 60764735 -60492795 - RLTR22_Mur LTR ERVK -509 1339 36 3 1048 1126 84 0 0 chr12 60764919 60765062 -60492468 + B1_Mm SINE Alu 2 144 -3 3 1048 354 23 0 0 chr12 60765062 60765105 -60492425 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1048 355 314 92 13 chr12 60765198 60765427 -60492103 - L1ME2 LINE L1 -1344 4802 4556 3 1048 2099 226 109 84 chr12 60765437 60766332 -60491198 - RMER1B Other Other 0 1066 45 3 1048 1130 232 0 0 chr12 60767192 60767403 -60490127 - B3 SINE B2 -3 213 3 3 1048 468 0 0 0 chr12 60767410 60767462 -60490068 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 3 1048 531 320 65 33 chr12 60768475 60768659 -60488871 + ID_B1 SINE B4 32 221 -3 3 1048 22 35 0 0 chr12 60769759 60769788 -60487742 + AT_rich Low_complexity Low_complexity 1 29 0 3 1048 180 280 20 0 chr12 60769828 60769878 -60487652 + L2b LINE L2 3325 3375 0 3 1048 325 389 75 34 chr12 60769932 60770281 -60487249 + LTR33 LTR ERVL 18 380 -135 3 1048 612 231 26 65 chr12 60770780 60770933 -60486597 + RSINE1 SINE B4 19 165 0 3 1048 298 42 20 20 chr12 60771620 60771669 -60485861 + (TCTCC)n Simple_repeat Simple_repeat 1 49 0 3 1048 7345 116 34 9 chr12 60771670 60773625 -60483905 - L1_Mus4 LINE L1 -47 6607 4575 3 1048 685 290 5 54 chr12 60773645 60773849 -60483681 - B3A SINE B2 -3 195 2 3 1048 297 265 12 0 chr12 60774807 60774890 -60482640 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 1048 823 177 0 19 chr12 60775267 60775428 -60482102 - L1VL2 LINE L1 -6080 255 98 3 1048 3471 114 9 45 chr12 60775428 60775990 -60481540 + Lx LINE L1 6109 6650 -4 3 1048 20489 80 5 3 chr12 60776311 60779944 -60477586 - L1Md_F2 LINE L1 -1 6581 2941 3 1048 1363 160 0 8 chr12 60779948 60780200 -60477330 - L1Md_F2 LINE L1 -6127 489 240 3 1048 216 0 0 0 chr12 60780401 60780425 -60477105 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1048 429 36 0 0 chr12 60780438 60780493 -60477037 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1048 228 323 15 46 chr12 60782331 60782396 -60475134 - ID4 SINE ID -20 63 1 3 1048 435 19 0 0 chr12 60782855 60782907 -60474623 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1048 413 184 45 15 chr12 60782910 60783029 -60474501 - B3A SINE B2 -70 125 1 3 1048 219 291 25 12 chr12 60783042 60783122 -60474408 - MIR SINE MIR -96 166 86 3 1048 492 342 0 14 chr12 60784936 60785084 -60472446 - MLT1A0 LTR MaLR -2 363 218 3 1048 1879 120 39 13 chr12 60785463 60785768 -60471762 - Lx3_Mus LINE L1 -8 7001 6689 3 1048 365 208 49 10 chr12 60786892 60786994 -60470536 - Lx9 LINE L1 -1 7643 7538 3 1048 1357 70 0 6 chr12 60786998 60787171 -60470359 + B2_Mm2 SINE B2 5 176 -19 4 1048 21 0 0 0 chr12 60787176 60787197 -60470333 + AT_rich Low_complexity Low_complexity 1 21 0 4 1048 279 0 0 0 chr12 60787235 60787266 -60470264 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1048 613 304 28 37 chr12 60787526 60787741 -60469789 + ORR1E LTR MaLR 2 214 -145 4 1048 381 43 0 0 chr12 60787832 60787879 -60469651 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 4 1048 1088 298 106 37 chr12 60787938 60788113 -60469417 + Lx9 LINE L1 6800 6988 -656 4 1048 1063 223 19 0 chr12 60788113 60788319 -60469211 - B3 SINE B2 -6 210 1 4 1048 1088 298 106 37 chr12 60788319 60788920 -60468610 + Lx9 LINE L1 6989 7629 -15 4 1048 1065 145 0 0 chr12 60789445 60789624 -60467906 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 1048 354 323 40 0 chr12 60789647 60789746 -60467784 - B4 SINE B4 -100 192 90 4 1048 523 329 7 7 chr12 60790102 60790246 -60467284 - B1F SINE Alu -3 146 3 4 1048 1044 293 70 11 chr12 60791251 60791606 -60465924 + MER57D LTR ERV1 18 393 -18 4 1048 3119 31 2 81 chr12 60791702 60792123 -60465407 - RLTR10 LTR ERVK -2 388 1 4 1048 2180 221 43 12 chr12 60792629 60793141 -60464389 - RLTR11A LTR ERVK 0 528 1 4 1048 233 109 62 0 chr12 60794475 60794539 -60462991 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1048 571 324 11 14 chr12 60794547 60794793 -60462737 + Lx9 LINE L1 7147 7466 -178 4 1048 336 127 0 0 chr12 60794793 60794848 -60462682 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1048 429 330 59 44 chr12 60794848 60794966 -60462564 + Lx9 LINE L1 7347 7471 -2 4 1048 26 50 0 0 chr12 60795084 60795124 -60462406 + AT_rich Low_complexity Low_complexity 1 40 0 4 1048 25 0 0 0 chr12 60795460 60795485 -60462045 + AT_rich Low_complexity Low_complexity 1 25 0 4 1048 3949 74 6 17 chr12 60795488 60796026 -60461504 + L1_Mus1 LINE L1 6036 6567 0 4 1048 287 320 55 73 chr12 60796889 60797054 -60460476 - MIRb SINE MIR -47 221 60 4 1048 22 0 0 0 chr12 60798674 60798696 -60458834 + AT_rich Low_complexity Low_complexity 1 22 0 4 1048 272 293 40 10 chr12 60799485 60799585 -60457945 - ORR1E LTR MaLR -1 358 256 4 1048 1600 207 78 35 chr12 60799673 60799738 -60457792 + MTC LTR MaLR 1 65 -356 4 1048 315 0 0 0 chr12 60799738 60799773 -60457757 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 4 1048 1600 207 78 35 chr12 60799773 60800103 -60457427 + MTC LTR MaLR 66 412 -9 4 1048 314 354 69 0 chr12 60802753 60802897 -60454633 + L1MD LINE L1 5419 5572 -2423 4 1048 538 267 25 0 chr12 60802915 60803035 -60454495 - B1F2 SINE Alu -1 148 26 4 1048 234 291 47 0 chr12 60803035 60803121 -60454409 + L1M5 LINE L1 5602 5691 -753 4 1048 1995 325 94 28 chr12 60803375 60803903 -60453627 - Lx9 LINE L1 -2 7471 6933 4 1048 2274 108 3 47 chr12 60803903 60804242 -60453288 + ORR1A3 LTR MaLR 3 326 0 4 1048 1995 316 94 29 chr12 60804242 60804924 -60452606 - Lx9 LINE L1 -580 7064 6318 4 1048 2030 136 3 10 chr12 60805127 60805378 -60452152 + RLTR10E LTR ERVK 1 251 -60 4 1048 1637 45 0 0 chr12 60805378 60805578 -60451952 + L1Md_T LINE L1 6383 6582 0 4 1048 2030 136 3 10 chr12 60805578 60805639 -60451891 + RLTR10E LTR ERVK 252 311 0 4 1048 447 296 39 6 chr12 60805676 60805856 -60451674 - Lx9 LINE L1 -1675 5969 5784 4 1048 4980 195 64 6 chr12 60805909 60806498 -60451032 - Lx9 LINE L1 -2 7642 7015 4 1048 216 0 0 0 chr12 60806498 60806522 -60451008 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 1048 4980 199 146 10 chr12 60806522 60807140 -60450390 - Lx9 LINE L1 -630 7014 6318 4 1048 1425 228 55 38 chr12 60807208 60807837 -60449693 - Lx9 LINE L1 -1532 6112 5440 4 1048 1213 256 81 21 chr12 60807851 60808155 -60449375 + Lx9 LINE L1 5097 5417 -430 4 1048 385 19 18 18 chr12 60808155 60808210 -60449320 + (CAA)n Simple_repeat Simple_repeat 2 56 0 4 1048 1213 256 81 21 chr12 60808210 60808423 -60449107 + L1_Rod LINE L1 5418 5644 -203 4 1048 534 86 0 0 chr12 60808446 60808527 -60449003 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1048 525 287 14 7 chr12 60808546 60808690 -60448840 - B3A SINE B2 -53 145 1 4 1048 329 294 33 0 chr12 60808865 60808955 -60448575 - B1F SINE Alu -12 105 16 4 1048 366 23 0 0 chr12 60808967 60809010 -60448520 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1048 208 154 58 0 chr12 60809054 60809106 -60448424 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1048 1942 60 0 12 chr12 60809226 60809477 -60448053 - L1_Mus1 LINE L1 -1 6566 6319 4 1048 520 310 29 12 chr12 60809556 60809726 -60447804 - LTR40a LTR ERVL -340 179 7 4 1048 3280 214 86 46 chr12 60811009 60811878 -60445652 + RMER13B LTR ERVK 5 908 0 4 1048 30 69 0 0 chr12 60813432 60813490 -60444040 + AT_rich Low_complexity Low_complexity 1 58 0 4 1048 23 0 0 0 chr12 60813621 60813644 -60443886 + AT_rich Low_complexity Low_complexity 1 23 0 4 1048 732 316 48 8 chr12 60813725 60813993 -60443537 - B4A SINE B4 -11 281 3 4 1048 183 42 0 0 chr12 60814705 60814729 -60442801 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1048 337 221 9 9 chr12 60814740 60814845 -60442685 + (TA)n Simple_repeat Simple_repeat 2 106 0 4 1048 657 321 31 28 chr12 60814928 60815219 -60442311 - B4A SINE B4 0 292 1 4 1048 234 143 196 0 chr12 60815269 60815325 -60442205 + L1MA5 LINE L1 6159 6225 -75 4 1048 1383 115 29 0 chr12 60815427 60815636 -60441894 + L1_Mus1 LINE L1 6353 6567 0 4 1048 25 0 0 0 chr12 60815636 60815661 -60441869 + AT_rich Low_complexity Low_complexity 1 25 0 4 1048 583 300 98 112 chr12 60815691 60816029 -60441501 + LTR87 LTR ERVL? 292 624 0 4 1048 2987 75 70 0 chr12 60816464 60816866 -60440664 - L1_Mus2 LINE L1 -1 6565 6136 4 1048 786 58 0 0 chr12 60816866 60816969 -60440561 + L1_Mus2 LINE L1 5997 6099 -467 4 1049 414 0 0 0 chr12 60817496 60817542 -60439988 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1049 541 395 86 44 chr12 60818035 60818697 -60438833 - LTR78 LTR ERV1 -363 941 252 4 1049 300 319 108 68 chr12 60818905 60819053 -60438477 - L1ME1 LINE L1 -44 6135 5982 4 1049 934 181 136 38 chr12 60819056 60819269 -60438261 - RMER10A LTR ERVL -208 234 1 4 1049 493 225 46 71 chr12 60819300 60819539 -60437991 - L1_Rod LINE L1 -6471 701 469 4 1049 4058 113 100 36 chr12 60819725 60820884 -60436646 + L1VL2 LINE L1 157 1409 -2206 4 1049 7193 157 55 11 chr12 60820882 60822309 -60435221 + Lx2B LINE L1 5458 6925 -75 4 1049 23 33 0 0 chr12 60822323 60822353 -60435177 + AT_rich Low_complexity Low_complexity 1 30 0 4 1049 854 211 0 21 chr12 60822456 60822650 -60434880 + Lx9 LINE L1 6815 7004 -640 4 1049 628 222 160 46 chr12 60823049 60823243 -60434287 - ID_B1 SINE B4 -8 216 1 4 1049 1583 202 41 17 chr12 60824002 60824364 -60433166 - ORR1D1 LTR MaLR 0 374 4 4 1049 880 280 97 47 chr12 60824614 60824955 -60432575 - MTD LTR MaLR -43 376 19 4 1049 829 28 19 0 chr12 60825241 60825349 -60432181 + (GAGAA)n Simple_repeat Simple_repeat 3 112 0 4 1049 262 247 39 13 chr12 60826067 60826145 -60431385 + ID4 SINE ID 1 80 -3 4 1049 240 230 40 13 chr12 60826679 60826754 -60430776 - MER20B DNA MER1_type -47 736 660 4 1049 734 334 66 58 chr12 60827076 60827699 -60429831 + MER20B DNA MER1_type 122 749 -34 4 1049 5498 76 41 7 chr12 60827705 60828458 -60429072 + L1_Mus3 LINE L1 5854 6632 -6 4 1049 372 324 36 22 chr12 60828916 60829055 -60428475 - ORR1E LTR MaLR -214 145 5 4 1049 250 250 68 0 chr12 60829057 60829145 -60428385 - L1MC4a LINE L1 -375 7620 7527 4 1049 692 126 209 15 chr12 60829376 60829515 -60428015 - Lx9 LINE L1 -1 7643 7477 4 1049 405 0 0 0 chr12 60829515 60829560 -60427970 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1049 692 126 209 15 chr12 60829560 60829621 -60427909 - Lx9 LINE L1 -168 7476 7404 4 1049 335 267 35 99 chr12 60829626 60829938 -60427592 - L1MC4a LINE L1 -780 7102 6811 4 1049 436 320 79 38 chr12 60829980 60830246 -60427284 - B4A SINE B4 -15 277 1 4 1049 528 16 0 0 chr12 60830698 60830759 -60426771 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1049 180 0 0 0 chr12 60831427 60831447 -60426083 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1049 233 237 68 0 chr12 60832628 60832687 -60424843 - MLT1D LTR MaLR -336 169 107 4 1049 428 332 76 20 chr12 60833235 60833432 -60424098 + MLT1D LTR MaLR 8 215 -290 4 1049 231 304 25 0 chr12 60833537 60833616 -60423914 + MLT1D LTR MaLR 418 498 -7 4 1049 405 0 0 0 chr12 60834392 60834437 -60423093 + (TCCCC)n Simple_repeat Simple_repeat 3 47 0 4 1049 491 26 52 0 chr12 60834443 60834520 -60423010 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 1049 441 0 0 0 chr12 60834520 60834569 -60422961 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1049 245 366 0 47 chr12 60834590 60834719 -60422811 - MLT1L LTR MaLR -351 259 137 4 1049 1184 62 0 0 chr12 60835836 60835981 -60421549 + B1_Mm SINE Alu 1 145 -2 4 1049 6009 56 6 1 chr12 60836024 60836828 -60420702 - L1_Mm LINE L1 -718 5165 4358 4 1049 603 279 12 24 chr12 60836881 60837046 -60420484 - RSINE1 SINE B4 0 165 3 4 1049 804 293 66 11 chr12 60837063 60837336 -60420194 - Lx8 LINE L1 -146 7327 7040 4 1049 2228 76 36 60 chr12 60837380 60837715 -60419815 - ORR1A2 LTR MaLR 0 327 1 4 1049 760 298 5 0 chr12 60837716 60837914 -60419616 - B3 SINE B2 -17 199 1 4 1049 439 241 19 108 chr12 60837914 60838072 -60419458 - Lx8 LINE L1 -419 7054 6911 4 1049 3207 47 5 0 chr12 60838203 60838586 -60418944 - IAPEY_LTR LTR ERVK 0 385 1 4 1049 682 360 77 7 chr12 60838592 60838902 -60418628 + MLT1A0 LTR MaLR 31 362 -3 4 1049 351 0 0 0 chr12 60839054 60839093 -60418437 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1049 459 0 0 0 chr12 60839093 60839143 -60418387 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1049 387 319 77 88 chr12 60839453 60839738 -60417792 + ORR1E LTR MaLR 67 348 -11 4 1049 2605 83 3 11 chr12 60840273 60840639 -60416891 + L1Md_F2 LINE L1 6220 6582 0 4 1049 490 271 132 66 chr12 60841187 60841369 -60416161 - B3A SINE B2 -1 197 4 4 1049 307 283 43 21 chr12 60841409 60841503 -60416027 + B4A SINE B4 1 96 -196 4 1049 318 140 349 57 chr12 60841494 60841600 -60415930 - B2_Mm2 SINE B2 -12 183 47 4 1049 987 123 99 0 chr12 60841666 60841828 -60415702 - B2_Mm1t SINE B2 -14 179 2 4 1049 3810 259 52 55 chr12 60842026 60843557 -60413973 + Lx9 LINE L1 6111 7637 -7 4 1049 324 334 25 35 chr12 60843560 60843835 -60413695 - MER33 DNA MER1_type -14 310 2 5 1049 203 386 64 99 chr12 60844545 60844827 -60412703 + L2b LINE L2 3091 3362 -13 5 1049 28 29 0 0 chr12 60846905 60846940 -60410590 + AT_rich Low_complexity Low_complexity 1 35 0 5 1049 1147 68 0 0 chr12 60846949 60847095 -60410435 - B1_Mus1 SINE Alu -2 146 1 5 1049 24 32 0 0 chr12 60847740 60847771 -60409759 + AT_rich Low_complexity Low_complexity 1 31 0 5 1049 675 25 0 0 chr12 60849543 60849624 -60407906 + (GGA)n Simple_repeat Simple_repeat 1 81 0 5 1049 215 327 105 23 chr12 60849624 60849796 -60407734 + L3 LINE CR1 3186 3371 -1118 5 1049 914 26 9 0 chr12 60849796 60849909 -60407621 + (TTTTC)n Simple_repeat Simple_repeat 3 116 0 5 1049 4683 72 0 0 chr12 60849932 60850528 -60407002 - L1_Mus1 LINE L1 0 6567 5972 5 1049 249 159 0 0 chr12 60850655 60850699 -60406831 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1049 849 299 28 28 chr12 60850699 60850988 -60406542 - B4A SINE B4 0 292 4 5 1049 414 0 0 0 chr12 60851060 60851106 -60406424 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1049 294 357 48 14 chr12 60851156 60851301 -60406229 + MIR SINE MIR 40 189 -73 5 1049 241 358 82 9 chr12 60852774 60852884 -60404646 - MIRm SINE MIR -135 141 24 5 1049 1232 33 0 7 chr12 60853514 60853668 -60403862 + (TCTA)n Simple_repeat Simple_repeat 4 156 0 5 1049 321 302 6 131 chr12 60856493 60856653 -60400877 - ID_B1 SINE B4 0 224 85 5 1049 378 273 39 137 chr12 60856779 60856811 -60400719 - B4A SINE B4 0 292 275 5 1049 381 70 0 0 chr12 60856811 60856868 -60400662 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1049 378 273 39 137 chr12 60856868 60856988 -60400542 - B4A SINE B4 -18 274 155 5 1049 400 244 23 8 chr12 60857582 60857710 -60399820 + L1MA4 LINE L1 5750 5879 -421 5 1049 1402 210 110 75 chr12 60858223 60858794 -60398736 + Lx7 LINE L1 7101 7691 -5 5 1049 435 52 0 0 chr12 60858952 60859010 -60398520 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1049 246 319 98 55 chr12 60859218 60859459 -60398071 + MTEa LTR MaLR 101 377 -2 5 1049 4031 37 0 4 chr12 60859505 60859992 -60397538 + L1Md_F3 LINE L1 6096 6580 -4 5 1049 473 275 132 17 chr12 60860038 60860212 -60397318 + B3A SINE B2 1 194 -4 5 1049 244 262 120 24 chr12 60861851 60861976 -60395554 + L2c LINE L2 3245 3381 -6 5 1049 237 364 72 27 chr12 60862494 60862717 -60394813 - MLT1L LTR MaLR -222 388 156 5 1049 1573 279 7 14 chr12 60862905 60863327 -60394203 + MTD LTR MaLR 1 419 0 5 1049 210 369 94 12 chr12 60863421 60863506 -60394024 - MamSINE1 SINE tRNA -102 188 97 5 1049 22 56 0 0 chr12 60864149 60864185 -60393345 + AT_rich Low_complexity Low_complexity 1 36 0 5 1049 374 326 64 0 chr12 60864308 60864449 -60393081 - Lx8 LINE L1 -151 7322 7173 5 1049 1026 227 152 26 chr12 60864469 60864772 -60392758 - ORR1C2 LTR MaLR -8 376 36 5 1049 1951 172 21 11 chr12 60864888 60865265 -60392265 - ORR1C2-int LTR MaLR 0 1509 1129 5 1049 2221 306 66 21 chr12 60865269 60865721 -60391809 - Lx8 LINE L1 -320 7153 6674 5 1049 3136 44 29 3 chr12 60865721 60866107 -60391423 + MTA_Mm LTR MaLR 1 396 0 5 1049 2221 306 66 21 chr12 60866107 60866577 -60390953 - Lx8 LINE L1 -800 6673 6189 5 1049 313 305 53 0 chr12 60866991 60867086 -60390444 - U6 snRNA snRNA -7 100 1 5 1049 390 21 0 0 chr12 60868358 60868405 -60389125 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1049 537 301 0 8 chr12 60868691 60868815 -60388715 - B3A SINE B2 -75 123 1 5 1049 211 234 15 15 chr12 60868897 60868962 -60388568 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1049 540 0 0 0 chr12 60869255 60869315 -60388215 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1049 265 188 30 30 chr12 60869910 60869976 -60387554 - MLT1J LTR MaLR -347 165 100 5 1049 3506 44 7 2 chr12 60870377 60870812 -60386718 - L1Md_F3 LINE L1 -2 6582 6146 5 1049 22 80 0 0 chr12 60871262 60871312 -60386218 + AT_rich Low_complexity Low_complexity 1 50 0 5 1049 21 0 0 0 chr12 60871347 60871368 -60386162 + AT_rich Low_complexity Low_complexity 1 21 0 5 1049 774 269 69 35 chr12 60871745 60872034 -60385496 + Lx7 LINE L1 5606 5904 -1792 5 1049 1676 124 52 37 chr12 60872107 60872433 -60385097 + Lx4B LINE L1 6725 7055 -3 5 1049 378 85 0 0 chr12 60872443 60872502 -60385028 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 5 1049 255 267 56 0 chr12 60872504 60872594 -60384936 + L1MA6 LINE L1 6056 6150 -150 5 1049 279 98 16 32 chr12 60872652 60872715 -60384815 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1049 859 303 63 4 chr12 60872871 60873126 -60384404 + B4A SINE B4 2 271 -21 5 1049 459 0 0 0 chr12 60874057 60874108 -60383422 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1049 624 62 0 0 chr12 60874298 60874379 -60383151 + (CAAAA)n Simple_repeat Simple_repeat 5 85 0 5 1049 1237 226 12 4 chr12 60874389 60874647 -60382883 - RMER5 LTR ERV1 -13 521 262 5 1049 1417 134 45 19 chr12 60874823 60875090 -60382440 + Lx4B LINE L1 6725 6998 -60 5 1049 700 186 205 11 chr12 60875101 60875291 -60382239 - RMER5 LTR ERV1 -292 242 16 5 1049 26 30 0 0 chr12 60875784 60875817 -60381713 + AT_rich Low_complexity Low_complexity 1 33 0 5 1049 611 279 96 50 chr12 60875965 60876308 -60381222 - RLTR10D LTR ERVK 0 359 1 5 1049 367 316 65 45 chr12 60876395 60876594 -60380936 + MIRb SINE MIR 30 232 -36 5 1049 297 167 0 0 chr12 60876594 60876648 -60380882 + A-rich Low_complexity Low_complexity 1 54 0 5 1049 897 286 9 4 chr12 60876850 60877177 -60380353 - Lx8 LINE L1 -1560 5913 5547 5 1049 1155 311 69 34 chr12 60877304 60877867 -60379663 + Lx8 LINE L1 6270 6852 -621 5 1049 912 154 191 5 chr12 60878240 60878429 -60379101 - URR1B DNA MER1_type -1 224 1 5 1049 1965 194 95 2 chr12 60878506 60878992 -60378538 - Lx9 LINE L1 -25 7619 7089 5 1049 1012 184 102 0 chr12 60878997 60879203 -60378327 + Lx9 LINE L1 6848 7074 -570 5 1049 397 313 87 130 chr12 60879719 60880042 -60377488 - MLT1A0 LTR MaLR -9 356 48 5 1049 211 274 0 0 chr12 60882101 60882174 -60375356 + A-rich Low_complexity Low_complexity 1 73 0 5 1049 713 291 31 12 chr12 60882175 60882429 -60375101 - Lx7 LINE L1 -334 7362 7104 5 1049 644 308 85 5 chr12 60882707 60882919 -60374611 - MIR SINE MIR -32 230 2 5 1049 1215 28 0 0 chr12 60883127 60883270 -60374260 + IAPEY3_LTR LTR ERVK 140 282 -50 5 1049 27 62 0 0 chr12 60883343 60883391 -60374139 + AT_rich Low_complexity Low_complexity 1 48 0 5 1049 562 312 61 35 chr12 60883580 60883809 -60373721 + B4A SINE B4 57 291 -1 5 1049 24 32 0 0 chr12 60884721 60884752 -60372778 + AT_rich Low_complexity Low_complexity 1 31 0 5 1049 385 319 142 40 chr12 60885507 60885732 -60371798 + MER21B LTR ERV1 19 266 -597 5 1049 581 359 52 38 chr12 60885833 60886120 -60371410 + MER21B LTR ERV1 471 761 -102 5 1049 675 268 91 0 chr12 60886248 60886446 -60371084 + B3 SINE B2 1 216 0 5 1049 213 65 0 0 chr12 60887232 60887263 -60370267 + (TTG)n Simple_repeat Simple_repeat 2 32 0 5 1049 1407 66 17 0 chr12 60887263 60887444 -60370086 - B2_Mm2 SINE B2 -9 186 3 5 1049 221 160 300 0 chr12 60888333 60888383 -60369147 + ID4_ SINE ID 3 67 -16 5 1049 3015 104 11 4 chr12 60888404 60888858 -60368672 + L1_Mus3 LINE L1 6179 6635 -3 5 1049 222 235 0 0 chr12 60888861 60888912 -60368618 + MIR SINE MIR 211 261 -1 5 1049 207 242 0 0 chr12 60889052 60889114 -60368416 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1049 495 0 0 0 chr12 60890150 60890205 -60367325 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1049 625 295 14 0 chr12 60890225 60890364 -60367166 - RSINE1 SINE B4 -22 143 3 5 1049 189 0 0 0 chr12 60890563 60890584 -60366946 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 5 1049 751 296 120 102 chr12 60890745 60891237 -60366293 - MLT1D LTR MaLR -4 501 1 5 1049 562 247 149 22 chr12 60891415 60891643 -60365887 - MER46C DNA MER2_type -60 278 22 5 1049 321 271 0 12 chr12 60891688 60891856 -60365674 + (CA)n Simple_repeat Simple_repeat 1 165 0 5 1049 338 126 10 40 chr12 60892745 60892805 -60364725 + A-rich Low_complexity Low_complexity 4 61 0 5 1049 609 14 0 0 chr12 60892805 60892875 -60364655 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1049 338 126 10 40 chr12 60892875 60892913 -60364617 + A-rich Low_complexity Low_complexity 62 98 0 5 1049 1175 41 0 14 chr12 60892930 60893078 -60364452 + B1_Mus2 SINE Alu 2 147 0 5 1049 295 158 267 50 chr12 60895453 60895573 -60361957 + B1F1 SINE Alu 2 147 -2 5 1049 260 53 26 0 chr12 60895586 60895624 -60361906 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 5 1049 1937 99 62 90 chr12 60896114 60896536 -60360994 - RMER17C LTR ERVK 0 410 1 5 1049 307 330 87 19 chr12 60896758 60896945 -60360585 - MIRb SINE MIR -46 222 28 5 1049 21 0 0 0 chr12 60897152 60897173 -60360357 + AT_rich Low_complexity Low_complexity 1 21 0 5 1049 194 98 0 47 chr12 60897266 60897309 -60360221 + (TCTCTG)n Simple_repeat Simple_repeat 3 43 0 5 1049 408 283 66 44 chr12 60897309 60897433 -60360097 - B1_Mur1 SINE Alu -16 133 6 5 1049 1493 226 43 35 chr12 60897657 60897993 -60359537 - ORR1D1 LTR MaLR 0 374 30 5 1049 2215 166 29 0 chr12 60897993 60898372 -60359158 - ORR1B1 LTR MaLR -4 390 1 5 1049 1493 226 43 35 chr12 60898372 60898406 -60359124 - ORR1D1 LTR MaLR -345 29 1 5 1049 441 0 0 0 chr12 60899697 60899746 -60357784 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 5 1049 1622 142 4 179 chr12 60899773 60900254 -60357276 - RMER17C LTR ERVK 0 410 14 5 1049 618 218 0 9 chr12 60900255 60900366 -60357164 - B1_Mur3 SINE Alu -39 110 1 5 1049 495 33 0 0 chr12 60900376 60900437 -60357093 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 5 1049 2841 57 9 7 chr12 60901919 60902385 -60355145 - L1_Mus3 LINE L1 -604 5962 5500 5 1049 5038 86 7 1 chr12 60902385 60903064 -60354466 + L1_Mus3 LINE L1 5949 6631 -7 5 1049 568 297 27 0 chr12 60903092 60903240 -60354290 + RSINE1 SINE B4 2 153 -12 5 1049 1683 137 10 64 chr12 60903638 60903949 -60353581 - Lx3A LINE L1 -2 6979 6686 6 1049 3637 91 3 21 chr12 60903949 60904520 -60353010 + Lx3_Mus LINE L1 6139 6699 -310 6 1049 242 151 37 19 chr12 60906034 60906088 -60351442 + A-rich Low_complexity Low_complexity 2 56 0 6 1049 308 281 20 20 chr12 60906387 60906485 -60351045 + CT-rich Low_complexity Low_complexity 4 101 0 6 1049 5565 127 43 2 chr12 60906694 60907561 -60349969 + Lx2B LINE L1 6080 6981 -19 6 1049 931 209 36 78 chr12 60907577 60907883 -60349647 + Lx2B LINE L1 6701 6993 -7 6 1049 334 361 60 104 chr12 60907943 60908261 -60349269 + MLT1-int LTR MaLR 1060 1363 -8 6 1049 806 183 18 0 chr12 60908542 60908711 -60348819 - RMER10A LTR ERVL 0 442 271 6 1049 472 295 92 102 chr12 60908719 60909135 -60348395 + RLTR16 LTR ERVK 1 414 -91 6 1049 438 20 0 0 chr12 60909135 60909186 -60348344 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1049 472 295 92 102 chr12 60909186 60909279 -60348251 + RLTR16 LTR ERVK 415 505 0 6 1049 770 282 113 92 chr12 60909400 60909771 -60347759 + MTE2a LTR MaLR 1 379 0 6 1049 441 0 0 0 chr12 60910025 60910074 -60347456 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1049 837 281 5 44 chr12 60910086 60910291 -60347239 + B3A SINE B2 2 198 0 6 1049 185 359 60 22 chr12 60910872 60911006 -60346524 - MIRb SINE MIR 0 268 130 6 1049 229 309 53 26 chr12 60913103 60913216 -60344314 + MER5B DNA MER1_type 17 132 -46 6 1049 30 77 0 0 chr12 60913567 60913632 -60343898 + AT_rich Low_complexity Low_complexity 1 65 0 6 1049 1310 113 84 14 chr12 60913793 60914008 -60343522 + Lx3A LINE L1 6746 6975 -6 6 1049 3816 137 33 2 chr12 60914506 60914586 -60342944 - Lx2 LINE L1 0 6997 6905 6 1049 216 0 0 0 chr12 60914586 60914610 -60342920 + (TCC)n Simple_repeat Simple_repeat 3 26 0 6 1049 3816 137 33 2 chr12 60914610 60915158 -60342372 - Lx2 LINE L1 -93 6904 6350 6 1049 291 54 0 0 chr12 60915490 60915527 -60342003 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1049 244 308 39 0 chr12 60917056 60917134 -60340396 + MIRc SINE MIR 87 167 -101 6 1049 1502 86 24 0 chr12 60918660 60918869 -60338661 - L1_Mus2 LINE L1 0 6566 6353 6 1049 6072 61 5 4 chr12 60919493 60920281 -60337249 - L1Md_F2 LINE L1 0 6582 5794 6 1049 249 196 20 0 chr12 60920694 60920745 -60336785 - MTEb LTR MaLR -6 373 322 6 1049 2756 147 32 24 chr12 60920779 60921246 -60336284 + Lx3C LINE L1 6504 6974 -2 6 1049 315 0 0 0 chr12 60921410 60921445 -60336085 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1049 230 326 80 60 chr12 60922509 60922760 -60334770 + L1M5 LINE L1 5370 5625 -569 6 1049 221 217 197 16 chr12 60922999 60923060 -60334470 + PB1D7 SINE Alu 17 88 -32 6 1049 302 340 138 47 chr12 60923377 60924504 -60333026 - L2a LINE L2 -165 3261 1982 6 1049 204 40 0 0 chr12 60924966 60924991 -60332539 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1049 195 67 43 43 chr12 60925871 60925918 -60331612 + A-rich Low_complexity Low_complexity 2 48 0 6 1049 387 0 0 0 chr12 60926570 60926613 -60330917 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1049 26 30 0 0 chr12 60926681 60926714 -60330816 + AT_rich Low_complexity Low_complexity 1 33 0 6 1049 392 0 21 0 chr12 60927259 60927307 -60330223 + (TAA)n Simple_repeat Simple_repeat 3 51 0 6 1049 376 317 215 42 chr12 60927659 60928012 -60329518 + L1M4 LINE L1 15 428 -6114 6 1049 342 328 96 35 chr12 60928075 60928666 -60328864 + L1M4 LINE L1 485 1111 -5431 6 1049 2545 75 55 0 chr12 60928782 60929144 -60328386 + Lx LINE L1 5728 6109 -545 6 1049 544 235 26 26 chr12 60929347 60929500 -60328030 + RLTR43A LTR ERVK 212 364 0 6 1049 287 275 11 11 chr12 60929704 60929796 -60327734 + RMER16-int LTR ERVK 229 320 -7897 6 1049 1610 123 123 19 chr12 60930776 60931100 -60326430 + RMER16-int LTR ERVK 313 670 -4736 6 1049 1168 113 16 5 chr12 60931171 60931357 -60326173 + RMER16-int LTR ERVK 1078 1265 -4141 6 1049 1719 150 10 7 chr12 60931360 60931649 -60325881 + Lx LINE L1 6360 6649 -5 6 1049 1061 81 7 0 chr12 60931700 60931836 -60325694 + B1_Mus1 SINE Alu 2 138 -10 6 1049 333 0 0 0 chr12 60931836 60931873 -60325657 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1049 396 240 131 10 chr12 60931874 60932080 -60325450 + Lx9 LINE L1 7413 7643 -1 6 1049 468 293 67 92 chr12 60932351 60932892 -60324638 + L1M4 LINE L1 4280 4806 -1838 6 1049 267 109 0 0 chr12 60932890 60932936 -60324594 - MusHAL1 LINE L1 -1900 812 767 6 1049 1203 119 51 19 chr12 60932942 60933156 -60324374 + Lx LINE L1 6434 6654 0 6 1049 30 45 0 0 chr12 60933198 60933242 -60324288 + AT_rich Low_complexity Low_complexity 1 44 0 6 1049 1782 163 54 15 chr12 60933466 60933802 -60323728 - Lx4B LINE L1 0 7058 6710 6 1049 581 309 175 35 chr12 60933904 60934390 -60323140 + L1M4 LINE L1 5131 5684 -960 6 1049 239 235 57 34 chr12 60934571 60934659 -60322871 + L1MD LINE L1 5626 5715 -527 6 1049 199 326 95 0 chr12 60935854 60935949 -60321581 + MIR3 SINE MIR 94 197 -11 6 1049 280 279 44 0 chr12 60936713 60936781 -60320749 + ID4 SINE ID 10 80 -3 6 1049 1910 186 16 52 chr12 60936936 60937299 -60320231 - MTC LTR MaLR 0 421 71 6 1049 933 27 0 0 chr12 60937299 60937411 -60320119 + (TCTCC)n Simple_repeat Simple_repeat 2 113 0 6 1049 653 110 188 20 chr12 60937416 60937565 -60319965 - L1_Mus3 LINE L1 -16 6622 6449 6 1049 485 191 0 0 chr12 60937565 60937649 -60319881 - MTC LTR MaLR -337 84 1 6 1049 716 243 104 16 chr12 60937663 60937914 -60319616 + L1MB1 LINE L1 5807 6079 -89 6 1049 269 259 35 0 chr12 60938471 60938529 -60319001 + B1F2 SINE Alu 1 60 -89 6 1049 327 220 60 0 chr12 60938855 60938955 -60318575 - Lx6 LINE L1 -17 7443 7338 6 1049 234 284 184 108 chr12 60938956 60939114 -60318416 - RLTR31A_Mm LTR ERVK 0 584 415 6 1049 9435 72 26 42 chr12 60939163 60940568 -60316962 + ETnERV2-int LTR ERVK 5043 6425 -981 6 1049 466 96 0 14 chr12 60940780 60940854 -60316676 + ETnERV2-int LTR ERVK 7331 7403 -3 6 1049 2236 142 14 36 chr12 60940856 60941274 -60316256 + RLTR9E LTR ERVK 1 409 0 6 1049 1547 138 88 3 chr12 60941274 60941557 -60315973 - RLTR31A_Mm LTR ERVK -277 307 1 6 1049 1096 228 74 7 chr12 60941557 60941840 -60315690 - Lx6 LINE L1 -98 7362 7061 6 1049 573 339 28 24 chr12 60942994 60943420 -60314110 - L1_Mur3 LINE L1 -589 5291 4864 6 1049 8649 68 6 1 chr12 60943421 60944545 -60312985 + L1Md_F2 LINE L1 4456 5585 -298 6 1049 7762 57 9 1 chr12 60944546 60945532 -60311998 + L1Md_F2 LINE L1 5587 6580 -2 6 1049 1022 286 73 15 chr12 60945566 60946085 -60311445 + L1_Mur3 LINE L1 4199 4747 -1133 6 1049 364 340 61 7 chr12 60947743 60947891 -60309639 + LTR85b LTR Gypsy? 22 177 -607 6 1049 414 0 0 0 chr12 60948129 60948175 -60309355 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1049 753 48 36 54 chr12 60948197 60948418 -60309112 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 6 131 242 361 74 43 chr12 60948422 60948584 -60308946 + LTR85b LTR Gypsy? 475 641 -143 6 1050 621 292 46 19 chr12 60948842 60949058 -60308472 + Charlie19a DNA Charlie 59 280 -106 6 1050 23 0 0 0 chr12 60949465 60949488 -60308042 + AT_rich Low_complexity Low_complexity 1 23 0 6 1050 24 32 0 0 chr12 60949695 60949726 -60307804 + AT_rich Low_complexity Low_complexity 1 31 0 6 1050 270 356 10 0 chr12 60950578 60950679 -60306851 + Tigger5 DNA MER2_type 2 103 -2303 6 1050 337 271 56 9 chr12 60950774 60950882 -60306648 + Tigger5 DNA MER2_type 2293 2405 -1 6 1050 21 57 0 0 chr12 60952208 60952243 -60305287 + AT_rich Low_complexity Low_complexity 1 35 0 6 1050 2813 66 39 10 chr12 60952389 60952774 -60304756 - MTA_Mm LTR MaLR 0 396 1 6 1050 275 386 25 12 chr12 60952939 60953099 -60304431 - MLT1F2 LTR MaLR -359 201 40 6 1050 908 303 56 45 chr12 60953210 60953584 -60303946 - MTE2b LTR MaLR -1 378 1 6 1050 218 32 32 0 chr12 60953657 60953688 -60303842 + (TATAA)n Simple_repeat Simple_repeat 1 32 0 6 1050 204 40 0 0 chr12 60954067 60954092 -60303438 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1050 362 296 177 39 chr12 60954105 60954235 -60303295 - RSINE1 SINE B4 -15 150 3 6 1050 183 42 0 0 chr12 60954407 60954431 -60303099 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 6 1050 281 286 267 6 chr12 60954510 60954675 -60302855 - MTEa LTR MaLR -165 214 7 6 1050 4102 60 0 13 chr12 60955521 60956063 -60301467 + L1Md_F2 LINE L1 6048 6582 0 6 1050 463 281 48 32 chr12 60956630 60956755 -60300775 - RSINE1 SINE B4 -28 137 11 6 1050 23 0 0 0 chr12 60956895 60956918 -60300612 + AT_rich Low_complexity Low_complexity 1 23 0 6 1050 1135 55 0 7 chr12 60957293 60957430 -60300100 + B1_Mus2 SINE Alu 1 137 -10 6 1050 438 36 0 0 chr12 60957430 60957486 -60300044 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 6 1050 3204 144 66 60 chr12 60957634 60958320 -60299210 - RMER6C LTR ERVK 0 690 1 6 1050 21 89 0 0 chr12 60958376 60958432 -60299098 + AT_rich Low_complexity Low_complexity 1 56 0 6 1050 242 305 74 74 chr12 60958602 60958832 -60298698 - L2a LINE L2 -130 3296 3067 6 1050 329 312 37 0 chr12 60958988 60959097 -60298433 + PB1D7 SINE Alu 3 115 -5 6 1050 2404 45 0 0 chr12 60960665 60960957 -60296573 + L1Md_T LINE L1 6290 6581 -1 6 1050 1900 160 3 39 chr12 60960986 60961324 -60296206 + ORR1A4 LTR MaLR 1 326 -3 6 1050 9316 144 95 56 chr12 60961324 60963209 -60294321 + ORR1A4-int LTR MaLR 2 1963 0 6 1050 1830 123 61 58 chr12 60963209 60963537 -60293993 + ORR1A4 LTR MaLR 1 329 0 6 1050 9906 110 177 79 chr12 60963539 60964380 -60293150 - L1_Mur2 LINE L1 -1481 4396 3480 6 1050 207 0 0 0 chr12 60964380 60964403 -60293127 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1050 9906 110 177 79 chr12 60964403 60965759 -60291771 - L1_Mur2 LINE L1 -2398 3479 1984 6 1050 3327 183 29 23 chr12 60965747 60966430 -60291100 - L1_Mur2 LINE L1 -5891 1195 509 6 1050 467 303 54 0 chr12 60966573 60966721 -60290809 - ID_B1 SINE B4 -6 218 67 6 1050 181 273 0 0 chr12 60967552 60967596 -60289934 + L3 LINE CR1 1973 2016 -2473 6 1050 189 0 0 0 chr12 60969158 60969179 -60288351 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 6 1050 339 238 16 0 chr12 60969650 60969713 -60287817 - B4A SINE B4 0 292 229 6 1050 240 35 0 0 chr12 60969713 60969742 -60287788 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 6 1050 369 336 46 26 chr12 60969893 60970046 -60287484 - B4A SINE B4 -117 175 20 6 1050 362 273 265 0 chr12 60970141 60970333 -60287197 - B4A SINE B4 -49 243 1 6 1050 222 305 34 0 chr12 60970413 60970494 -60287036 + (CATG)n Simple_repeat Simple_repeat 1 83 0 6 1050 23 0 0 0 chr12 60971154 60971177 -60286353 + AT_rich Low_complexity Low_complexity 1 23 0 6 1050 25 83 0 0 chr12 60971454 60971514 -60286016 + AT_rich Low_complexity Low_complexity 1 60 0 6 1050 677 265 6 24 chr12 60971922 60972088 -60285442 + RSINE1 SINE B4 3 165 0 6 1050 225 83 0 0 chr12 60972095 60972131 -60285399 + (CAGAGA)n Simple_repeat Simple_repeat 1 36 0 6 1050 495 273 97 26 chr12 60972171 60972479 -60285051 + L1MB7 LINE L1 4699 5028 -1118 7 1050 307 293 121 35 chr12 60972729 60972927 -60284603 + L1MB7 LINE L1 5317 5531 -643 7 1050 236 294 15 0 chr12 60972927 60972995 -60284535 + L1MB7 LINE L1 5789 5857 -317 7 1050 302 173 110 12 chr12 60973047 60973129 -60284401 + Lx7 LINE L1 7271 7360 -336 7 1050 180 135 0 0 chr12 60973139 60973176 -60284354 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 7 1050 411 38 0 0 chr12 60973203 60973256 -60284274 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1050 215 73 98 0 chr12 60973258 60973299 -60284231 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 7 1050 21 36 0 0 chr12 60973350 60973378 -60284152 + AT_rich Low_complexity Low_complexity 1 28 0 7 1050 244 267 134 67 chr12 60973378 60973647 -60283883 + L1MB7 LINE L1 5890 6176 -8 7 1050 22 0 0 0 chr12 60974061 60974083 -60283447 + AT_rich Low_complexity Low_complexity 1 22 0 7 1050 688 185 22 7 chr12 60974656 60974792 -60282738 + B1_Mur2 SINE Alu 1 138 -11 7 1050 6220 227 153 167 chr12 60974891 60976773 -60280757 + Lx7 LINE L1 755 3126 -2754 7 1050 207 0 0 0 chr12 60976773 60976796 -60280734 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1050 6220 213 158 186 chr12 60976796 60977411 -60280119 + Lx7 LINE L1 3127 3753 -3943 7 1050 3372 188 42 35 chr12 60977411 60978106 -60279424 + RMER6D LTR ERVK 1 700 -20 7 1050 6220 213 158 186 chr12 60978106 60980566 -60276964 + Lx7 LINE L1 3754 6267 -1429 7 1050 243 174 21 21 chr12 60980587 60980634 -60276896 - Lx7 LINE L1 -1034 6662 6616 7 1050 470 230 70 0 chr12 60980619 60980719 -60276811 + Lx7 LINE L1 6477 6583 -1113 7 1050 1342 277 36 5 chr12 60980727 60981112 -60276418 + Lx7 LINE L1 6711 7107 -589 7 1050 233 222 0 0 chr12 60981133 60981187 -60276343 - Lx5 LINE L1 -3 7047 6994 7 1050 375 78 0 0 chr12 60981446 60981497 -60276033 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1050 264 366 0 9 chr12 60981532 60981645 -60275885 + B3 SINE B2 103 214 -2 7 1050 483 63 0 0 chr12 60981666 60981729 -60275801 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1050 194 150 25 0 chr12 60981732 60981772 -60275758 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1050 293 323 139 26 chr12 60981948 60982142 -60275388 + MLT1A LTR MaLR 145 369 -5 7 1050 419 186 39 52 chr12 60983456 60983609 -60273921 + Lx9 LINE L1 7493 7643 -1 7 1050 3930 83 21 0 chr12 60983800 60984333 -60273197 - L1_Mus3 LINE L1 0 6638 6095 7 1050 430 293 0 48 chr12 60984752 60984899 -60272631 + Lx8 LINE L1 7094 7233 -240 7 1050 273 222 71 0 chr12 60984976 60985075 -60272455 + (TAGA)n Simple_repeat Simple_repeat 2 107 0 7 1050 669 133 44 9 chr12 60986012 60986126 -60271404 - Lx5 LINE L1 -1048 6002 5885 7 1050 465 60 0 0 chr12 60986214 60986281 -60271249 - L1Md_F2 LINE L1 -2 6580 6514 7 1050 22 0 0 0 chr12 60986281 60986303 -60271227 + AT_rich Low_complexity Low_complexity 1 22 0 7 1050 2299 268 33 19 chr12 60986380 60986920 -60270610 - Lx5 LINE L1 -3 7047 6500 7 1050 1355 147 157 4 chr12 60986908 60987188 -60270342 - Lx5 LINE L1 -1048 6002 5680 7 1050 5227 179 44 21 chr12 60987182 60987230 -60270300 + L1_Mur2 LINE L1 4576 4623 -1254 7 1050 198 0 0 0 chr12 60987230 60987252 -60270278 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1050 5227 179 44 21 chr12 60987252 60988273 -60269257 + L1_Mur2 LINE L1 4624 5670 -207 7 1050 795 212 95 84 chr12 60988402 60988535 -60268995 - RLTR25B LTR ERVK 0 1103 960 7 1050 432 0 0 0 chr12 60988535 60988583 -60268947 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1050 795 212 95 84 chr12 60988583 60988733 -60268797 - RLTR25B LTR ERVK -144 959 817 7 1050 3536 187 83 6 chr12 60988927 60989641 -60267889 - RLTR25B LTR ERVK -173 855 87 7 1050 1085 47 13 7 chr12 60989678 60989827 -60267703 - L1_Mus1 LINE L1 -1 6566 6417 7 1050 5296 55 1 15 chr12 60989825 60990505 -60267025 + L1Md_F2 LINE L1 5911 6581 -1 7 1050 311 116 0 0 chr12 60990507 60990550 -60266980 - L1_Mus1 LINE L1 -138 6429 6387 7 1050 1328 84 0 0 chr12 60990533 60990711 -60266819 + L1_Mus1 LINE L1 6193 6370 -197 7 1050 405 258 9 85 chr12 60990711 60990817 -60266713 - RLTR25B LTR ERVK -1003 100 3 7 1050 471 266 53 15 chr12 60990844 60991050 -60266480 + Lx7 LINE L1 7256 7469 -227 7 1050 28 61 0 0 chr12 60992487 60992536 -60264994 + AT_rich Low_complexity Low_complexity 1 49 0 7 1050 1589 299 98 4 chr12 60992797 60993345 -60264185 + Lx8 LINE L1 6721 7320 -153 7 1050 309 151 0 0 chr12 60993358 60993411 -60264119 + (CAA)n Simple_repeat Simple_repeat 2 54 0 7 1050 27 0 0 0 chr12 60993523 60993550 -60263980 + AT_rich Low_complexity Low_complexity 1 27 0 7 1050 183 186 0 0 chr12 60993777 60993820 -60263710 + (CATA)n Simple_repeat Simple_repeat 4 46 0 7 1050 1003 143 0 0 chr12 60994042 60994182 -60263348 - B1_Mus1 SINE Alu -7 141 2 7 1050 2514 143 15 37 chr12 60994280 60994743 -60262787 + RLTR11B LTR ERVK 1 453 0 7 1050 1210 184 4 97 chr12 60994896 60994942 -60262588 - URR1A DNA MER1_type -1 225 203 7 1050 1388 76 5 0 chr12 60994942 60995127 -60262403 - L1_Mus1 LINE L1 0 6567 6382 7 1050 1210 184 4 97 chr12 60995127 60995327 -60262203 - URR1A DNA MER1_type -24 202 2 7 1050 222 37 0 0 chr12 60996923 60996950 -60260580 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1050 472 279 155 43 chr12 60997474 60997661 -60259869 - B3 SINE B2 -8 208 1 7 1050 4091 214 58 79 chr12 60997728 60998889 -60258641 + Lx7 LINE L1 6558 7693 -3 7 1050 393 226 30 45 chr12 60998876 60998914 -60258616 + Lx7 LINE L1 7565 7597 -99 7 1050 333 47 0 0 chr12 60998914 60998957 -60258573 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 7 1050 393 226 30 45 chr12 60998957 60999052 -60258478 + Lx7 LINE L1 7598 7696 0 7 1050 450 0 0 0 chr12 61000241 61000291 -60257239 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1050 828 299 124 18 chr12 61000292 61000744 -60256786 - L1MB1 LINE L1 -4 6164 5665 2 1050 476 266 8 30 chr12 61001495 61001627 -60255903 - B1F SINE Alu -9 140 12 3 1050 255 279 109 55 chr12 61001529 61001639 -60255891 - B4 SINE B4 -98 194 79 4 1050 1040 301 146 11 chr12 61001811 61002264 -60255266 - MT2A LTR ERVL -12 521 8 5 1050 180 345 0 0 chr12 61002446 61002504 -60255026 - L2a LINE L2 -6 3420 3363 6 1050 216 0 0 0 chr12 61002542 61002566 -60254964 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1050 185 363 174 25 chr12 61002670 61003493 -60254037 - L2a LINE L2 -342 3077 2133 6 1050 455 282 44 35 chr12 61003702 61003816 -60253714 - PB1D10 SINE Alu 0 117 3 8 1050 473 261 22 0 chr12 61003731 61003823 -60253707 - ID_B1 SINE B4 -54 170 77 9 1050 906 28 0 0 chr12 61004373 61004482 -60253048 + (CA)n Simple_repeat Simple_repeat 1 109 0 1 1050 378 0 0 0 chr12 61005965 61006007 -60251523 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1050 351 307 23 38 chr12 61006111 61006243 -60251287 - B1_Mur3 SINE Alu -17 132 3 1 1050 585 0 0 0 chr12 61006459 61006524 -60251006 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1 1050 15309 44 2 0 chr12 61006941 61009535 -60247995 - L1Md_F2 LINE L1 0 6582 3985 1 1050 571 254 42 42 chr12 61010754 61010947 -60246583 + B3A SINE B2 5 197 -1 1 1050 359 219 37 47 chr12 61011082 61011214 -60246316 + MLT1E2 LTR MaLR 534 625 -2 1 1050 313 327 171 31 chr12 61011402 61011853 -60245677 - L1M5 LINE L1 -1524 4622 4109 1 1050 449 359 38 82 chr12 61011956 61012347 -60245183 - MLT1A LTR MaLR 0 374 1 1 1050 436 312 43 37 chr12 61012518 61012841 -60244689 - L1M5 LINE L1 -2276 3870 3546 1 1050 274 220 60 18 chr12 61015701 61015868 -60241662 + (TA)n Simple_repeat Simple_repeat 2 175 0 1 1050 491 322 53 61 chr12 61015919 61016183 -60241347 - B4A SINE B4 -28 264 3 2 1050 208 204 41 0 chr12 61016363 61016412 -60241118 + CT-rich Low_complexity Low_complexity 2 52 0 2 1050 1165 275 65 3 chr12 61016461 61016786 -60240744 + MLT2C1 LTR ERVL 1 345 -52 2 1050 28 29 0 0 chr12 61016796 61016831 -60240699 + AT_rich Low_complexity Low_complexity 1 35 0 2 1050 392 235 44 7 chr12 61017049 61017186 -60240344 - Lx6 LINE L1 0 7460 7319 2 1050 1728 78 74 0 chr12 61017458 61017714 -60239816 - L1_Mus3 LINE L1 0 6638 6364 2 1050 4193 86 57 0 chr12 61017714 61017748 -60239782 + L1_Mus3 LINE L1 5751 5784 -854 2 1050 1977 94 7 0 chr12 61017748 61018034 -60239496 + L1_Mus2 LINE L1 6279 6566 0 2 1050 4193 86 57 0 chr12 61018034 61018592 -60238938 + L1_Mus3 LINE L1 5785 6375 -263 2 1050 528 16 0 0 chr12 61018703 61018764 -60238766 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1050 253 136 0 0 chr12 61019407 61019451 -60238079 + Lx4B LINE L1 6692 6735 -323 2 1050 640 344 84 30 chr12 61019452 61019821 -60237709 + MLT1C LTR MaLR 1 389 -78 3 1050 745 289 93 89 chr12 61019872 61020301 -60237229 + Lx8 LINE L1 6983 7413 -60 3 1050 274 128 0 60 chr12 61020336 61020386 -60237144 + L1_Rod LINE L1 3514 3560 -2287 3 1050 2672 220 52 43 chr12 61020385 61021153 -60236377 - L1_Rod LINE L1 -3347 2500 1726 3 1050 2696 224 59 31 chr12 61021167 61021841 -60235689 - RLTR25A LTR ERVK -410 693 1 3 1050 856 160 112 24 chr12 61021841 61022128 -60235402 - L1_Rod LINE L1 -4424 1423 1108 3 1050 16076 70 9 2 chr12 61022132 61024938 -60232592 - L1Md_F2 LINE L1 0 6582 3757 3 1050 432 0 0 0 chr12 61025778 61025826 -60231704 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1050 414 0 0 0 chr12 61025858 61025904 -60231626 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1050 26 0 0 0 chr12 61025931 61025957 -60231573 + AT_rich Low_complexity Low_complexity 1 26 0 3 1050 201 383 23 58 chr12 61027417 61027589 -60229941 - MIR SINE MIR -75 187 22 3 1050 304 350 0 0 chr12 61028849 61028952 -60228578 + Lx7 LINE L1 5625 5727 -1969 4 1050 345 24 0 0 chr12 61028958 61029000 -60228530 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1050 701 291 35 39 chr12 61029000 61029254 -60228276 - RMER15 LTR ERVL -47 528 276 4 1050 427 273 15 0 chr12 61029444 61029576 -60227954 + L1_Rod LINE L1 5714 5847 0 4 1050 543 213 0 134 chr12 61029589 61029746 -60227784 + ORR1D1 LTR MaLR 1 136 -238 4 1050 238 277 0 0 chr12 61029719 61029766 -60227764 - B1F SINE Alu -52 97 51 4 1050 229 283 0 0 chr12 61030519 61030572 -60226958 - ID_B1 SINE B4 -78 146 94 4 1050 530 244 28 49 chr12 61030814 61030956 -60226574 + ID_B1 SINE B4 84 222 -2 4 1050 21 0 0 0 chr12 61032445 61032466 -60225064 + AT_rich Low_complexity Low_complexity 1 21 0 4 1050 225 0 0 0 chr12 61032755 61032780 -60224750 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1050 903 19 0 0 chr12 61034083 61034188 -60223342 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 1050 2849 188 63 13 chr12 61034235 61034774 -60222756 + RMER15 LTR ERVL 1 566 -9 5 1050 1570 32 5 0 chr12 61034774 61034960 -60222570 + B2_Mm1t SINE B2 1 187 -6 5 1050 275 287 62 44 chr12 61036373 61036486 -60221044 - MTE2a LTR MaLR -13 366 252 5 1050 674 296 6 0 chr12 61039458 61039627 -60217903 + B3 SINE B2 1 170 -46 5 1050 339 113 0 0 chr12 61039627 61039680 -60217850 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1050 180 111 0 0 chr12 61039844 61039871 -60217659 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 5 1050 7170 177 38 13 chr12 61039871 61041884 -60215646 - Lx4B LINE L1 -20 7038 4965 5 1050 4339 132 4 3 chr12 61041879 61042588 -60214942 + Lx4B LINE L1 4246 4955 -922 5 1050 325 366 37 7 chr12 61042599 61042734 -60214796 + ID_B1 SINE B4 81 219 -5 5 1050 353 342 136 12 chr12 61042981 61043224 -60214306 + Arthur1 DNA Tip100 292 564 -3383 5 1050 1003 294 119 11 chr12 61043245 61043623 -60213907 - MTD LTR MaLR 0 419 1 6 1050 278 281 22 59 chr12 61043631 61043767 -60213763 + Arthur1 DNA Tip100 3390 3520 -427 5 1050 1344 138 0 18 chr12 61043769 61043991 -60213539 + Lx2 LINE L1 6780 6997 0 6 1050 360 43 0 0 chr12 61044011 61044057 -60213473 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1050 653 340 44 34 chr12 61044386 61044681 -60212849 - MLT1A LTR MaLR -75 299 2 6 1050 348 302 31 10 chr12 61045600 61045697 -60211833 - PB1D7 SINE Alu -7 113 15 6 1050 519 203 128 21 chr12 61045700 61045841 -60211689 + RLTR30 LTR ERV1 1 156 -223 6 1050 291 114 0 0 chr12 61045844 61045888 -60211642 + (CAAG)n Simple_repeat Simple_repeat 3 46 0 6 1050 1291 112 5 5 chr12 61046086 61046293 -60211237 - L1_Mus4 LINE L1 -5 6631 6425 6 1050 4164 134 3 37 chr12 61046293 61047027 -60210503 + L1_Mur2 LINE L1 3193 3901 -1976 6 1050 354 314 103 95 chr12 61047139 61047508 -60210022 - L1MD LINE L1 -1129 5014 4643 6 1050 267 333 35 35 chr12 61047741 61047884 -60209646 - MLT1B LTR MaLR -219 171 29 7 1050 345 100 0 0 chr12 61047970 61048020 -60209510 + (TATG)n Simple_repeat Simple_repeat 3 52 0 7 1050 1653 93 17 0 chr12 61048100 61048337 -60209193 - L1Md_F2 LINE L1 0 6582 6342 7 1050 36084 37 4 7 chr12 61048337 61053846 -60203684 + L1Md_A LINE L1 100 5586 -297 7 1050 8175 36 4 0 chr12 61053846 61054838 -60202692 + L1Md_A LINE L1 5587 6582 0 7 1050 33857 75 3 9 chr12 61054838 61060048 -60197482 - L1Md_F2 LINE L1 -223 6359 1182 7 1050 640 71 20 0 chr12 61060054 61060153 -60197377 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 7 1050 315 330 58 67 chr12 61060215 61060335 -60197195 + B1F SINE Alu 17 135 -14 7 1050 228 35 0 0 chr12 61060335 61060364 -60197166 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 7 1050 2203 239 88 79 chr12 61060453 61061249 -60196281 - Lx9 LINE L1 -14 7630 6828 7 1050 250 180 89 19 chr12 61061220 61061312 -60196218 + L1_Mur1 LINE L1 4535 4637 -1506 7 1050 477 292 37 40 chr12 61061312 61061555 -60195975 + MER2 DNA MER2_type 91 341 -4 7 1050 750 78 0 0 chr12 61061667 61061782 -60195748 + (CA)n Simple_repeat Simple_repeat 2 116 0 8 1050 3019 176 62 37 chr12 61062138 61062764 -60194766 - RLTR26 LTR ERVK 0 642 1 8 1050 534 288 72 23 chr12 61063021 61063409 -60194121 - L1M4 LINE L1 -1620 4526 4120 8 1050 246 294 37 116 chr12 61063676 61063865 -60193665 + L2a LINE L2 3249 3422 -4 8 1050 4880 92 14 3 chr12 61064632 61065337 -60192193 - L1_Mur1 LINE L1 -779 5107 4395 8 1050 1110 71 0 0 chr12 61066947 61067088 -60190442 + B1_Mus1 SINE Alu 1 141 -7 8 1050 655 190 70 0 chr12 61067120 61067262 -60190268 + Lx5 LINE L1 6896 7047 -3 8 1050 23 0 0 0 chr12 61067647 61067670 -60189860 + AT_rich Low_complexity Low_complexity 1 23 0 8 1050 303 188 30 45 chr12 61068026 61068093 -60189437 - PB1D9 SINE Alu -14 106 41 8 1050 479 376 61 45 chr12 61068821 61069180 -60188350 + LTR16E1 LTR ERVL 173 537 -1 8 1050 449 203 36 36 chr12 61071983 61072121 -60185409 + Lx9 LINE L1 7505 7642 -2 9 1050 189 107 0 0 chr12 61072143 61072171 -60185359 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1050 216 0 0 0 chr12 61072656 61072680 -60184850 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1050 23 0 0 0 chr12 61073345 61073368 -60184162 + AT_rich Low_complexity Low_complexity 1 23 0 9 1050 556 181 99 46 chr12 61073380 61073531 -60183999 - Lx7 LINE L1 0 7696 7538 9 1050 441 311 76 0 chr12 61073607 61073739 -60183791 - B1F SINE Alu -7 142 1 9 1050 1385 29 0 11 chr12 61074082 61074258 -60183272 + L1Md_F2 LINE L1 6396 6569 -13 9 1050 673 238 41 14 chr12 61074358 61074503 -60183027 - B1_Mur1 SINE Alu 0 149 1 9 1050 487 204 85 8 chr12 61074519 61074678 -60182852 - B3A SINE B2 -14 181 2 9 1050 222 37 0 0 chr12 61075545 61075572 -60181958 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1050 22 70 0 0 chr12 61075890 61075933 -60181597 + AT_rich Low_complexity Low_complexity 1 43 0 1 1050 21 36 0 0 chr12 61075993 61076021 -60181509 + AT_rich Low_complexity Low_complexity 1 28 0 1 1050 437 348 7 7 chr12 61076144 61076286 -60181244 - B1F SINE Alu -1 148 7 1 1050 875 285 117 27 chr12 61076696 61077202 -60180328 - L1MA5A LINE L1 -408 5889 5366 1 1050 1038 160 28 0 chr12 61077230 61077443 -60180087 + Lx2 LINE L1 6779 6997 0 1 1050 1293 259 91 17 chr12 61078205 61078779 -60178751 - L1MA5A LINE L1 -1249 4894 4279 1 1050 23 0 0 0 chr12 61078927 61078950 -60178580 + AT_rich Low_complexity Low_complexity 1 23 0 1 1050 322 350 33 0 chr12 61079247 61079367 -60178163 - RSINE1 SINE B4 -37 128 5 1 1051 1283 208 26 4 chr12 61080085 61080355 -60177175 + Lx7 LINE L1 7135 7410 -286 1 1051 394 265 19 10 chr12 61080397 61080500 -60177030 + LTR65 LTR ERV1 264 367 -302 1 1051 4604 97 34 1 chr12 61080502 61081173 -60176357 - L1_Mus3 LINE L1 0 6638 5946 1 1051 302 0 0 0 chr12 61081173 61081206 -60176324 + L1_Mus4 LINE L1 5882 5914 -722 1 1051 303 345 113 52 chr12 61081653 61081813 -60175717 - L1MEc LINE L1 -3475 2844 2664 1 1051 1088 103 0 0 chr12 61081813 61081958 -60175572 - B1_Mus1 SINE Alu -3 145 1 1 1051 303 345 113 52 chr12 61081958 61082143 -60175387 - L1MEc LINE L1 -3656 2663 2478 1 1051 327 201 76 10 chr12 61082173 61082295 -60175235 - L1MEc LINE L1 -4017 2398 2266 1 1051 586 270 143 0 chr12 61082319 61082508 -60175022 - B3 SINE B2 0 216 1 1 1051 834 106 0 0 chr12 61082699 61082822 -60174708 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 1 1051 368 338 181 12 chr12 61082906 61083337 -60174193 - L1MEc LINE L1 -4509 1891 1388 1 1051 254 67 0 0 chr12 61083654 61083699 -60173831 - L1_Mus4 LINE L1 -1 6635 6591 1 1051 3898 50 0 22 chr12 61083724 61084231 -60173299 - L1Md_F2 LINE L1 0 6582 6087 1 1051 44 20 0 0 chr12 61084342 61084393 -60173137 + AT_rich Low_complexity Low_complexity 1 51 0 1 1051 214 106 43 0 chr12 61085126 61085173 -60172357 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1051 747 33 0 0 chr12 61085183 61085273 -60172257 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1051 23 33 0 0 chr12 61085842 61085872 -60171658 + AT_rich Low_complexity Low_complexity 1 30 0 1 1051 247 346 48 0 chr12 61086920 61087024 -60170506 + PB1D10 SINE Alu 6 114 -3 1 1051 695 50 32 32 chr12 61087038 61087163 -60170367 + (TCTCTG)n Simple_repeat Simple_repeat 2 126 0 1 1051 1005 28 141 7 chr12 61087659 61087801 -60169729 + B2_Mm2 SINE B2 1 161 -34 1 1051 405 0 0 0 chr12 61087801 61087846 -60169684 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1 1051 313 226 0 16 chr12 61087940 61088003 -60169527 + Lx9 LINE L1 6820 6881 -763 1 1051 230 178 39 0 chr12 61088607 61088673 -60168857 - L1M4 LINE L1 -401 5839 5771 1 1051 459 364 43 0 chr12 61089076 61089263 -60168267 - B3A SINE B2 -1 197 3 1 1051 288 321 113 21 chr12 61089268 61089462 -60168068 + B3 SINE B2 5 216 0 1 1051 613 309 21 89 chr12 61089699 61089945 -60167585 - MLT1G3 LTR MaLR -217 378 102 1 1051 3132 93 14 2 chr12 61089945 61090387 -60167143 - L1_Mus3 LINE L1 0 6638 6192 1 1051 286 328 118 15 chr12 61090387 61090435 -60167095 - MLT1G3 LTR MaLR -447 101 41 1 1051 424 361 144 21 chr12 61090493 61090867 -60166663 - MLT1G3-int LTR MaLR -12 1397 978 1 1051 2312 106 65 22 chr12 61090885 61091253 -60166277 - Lx2 LINE L1 0 6997 6614 1 1051 399 286 13 7 chr12 61091344 61091459 -60166071 + B3A SINE B2 1 112 -81 1 1051 207 0 0 0 chr12 61091491 61091514 -60166016 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 1 1051 22 0 0 0 chr12 61091609 61091631 -60165899 + AT_rich Low_complexity Low_complexity 1 22 0 1 1051 1649 79 4 4 chr12 61091633 61091862 -60165668 - L1_Mus2 LINE L1 -1 6565 6337 1 1051 989 114 14 0 chr12 61091918 61092058 -60165472 - B1_Mus1 SINE Alu -6 142 1 1 1051 2844 186 160 76 chr12 61092058 61092862 -60164668 - RMER19B LTR ERVK -30 872 1 1 1051 392 316 34 39 chr12 61092873 61093051 -60164479 + L1_Rod LINE L1 68 244 -6928 1 1051 2794 214 58 51 chr12 61093071 61093621 -60163909 + L1_Rod LINE L1 492 1064 -4783 1 1051 262 133 0 62 chr12 61093621 61093669 -60163861 - U2 snRNA snRNA -143 45 1 1 1051 2794 214 58 51 chr12 61093669 61094438 -60163092 + L1_Rod LINE L1 1065 1868 -3979 1 1051 4242 225 66 9 chr12 61094430 61095462 -60162068 + Lx9 LINE L1 6547 7637 -7 1 1051 244 200 20 0 chr12 61095717 61095767 -60161763 - MLT1G3-int LTR MaLR -802 607 557 1 1051 1779 158 0 0 chr12 61095791 61096070 -60161460 + Lx2 LINE L1 6091 6369 -628 1 1051 480 133 62 0 chr12 61096071 61096184 -60161346 + L1_Mus2 LINE L1 6447 6566 0 1 1051 4001 122 10 5 chr12 61096196 61096804 -60160726 + Lx2 LINE L1 6387 6997 0 1 1051 441 287 75 112 chr12 61096883 61097205 -60160325 - MLT1G3-int LTR MaLR -831 578 269 1 1051 8321 102 7 74 chr12 61097340 61098711 -60158819 + Lx3_Mus LINE L1 5730 7008 -1 1 1051 281 270 95 0 chr12 61098846 61098920 -60158610 + MLT1E LTR MaLR 108 188 -465 1 1051 185 294 41 107 chr12 61099372 61099494 -60158036 - L2c LINE L2 -250 3137 3024 1 1051 1427 265 69 5 chr12 61099611 61099987 -60157543 - MTD LTR MaLR -2 417 18 1 1051 2173 258 63 97 chr12 61100016 61100741 -60156789 - MTD-int LTR MaLR -28 1230 542 1 1051 2086 121 128 30 chr12 61100741 61101108 -60156422 - RLTR9D LTR ERVK 0 403 1 1 1051 2173 273 108 70 chr12 61101108 61101397 -60156133 - MTD-int LTR MaLR -717 541 1 1 1051 1228 264 99 8 chr12 61101406 61101761 -60155769 - MTD LTR MaLR -13 406 20 1 1051 1087 100 0 6 chr12 61102822 61102993 -60154537 + L1_Mus4 LINE L1 6460 6629 -7 1 1051 256 250 158 0 chr12 61104002 61104078 -60153452 - LTR68 LTR ERV1 -6 734 647 1 1051 245 342 58 25 chr12 61104157 61104277 -60153253 - LTR68 LTR ERV1 -246 494 371 1 1051 1256 226 23 4 chr12 61104734 61105000 -60152530 + ORR1D1-int LTR MaLR 1100 1370 0 1 1051 790 224 17 18 chr12 61105000 61105200 -60152330 + ORR1D1 LTR MaLR 1 204 -190 1 1051 455 67 0 26 chr12 61105200 61105277 -60152253 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 1 1051 719 270 24 24 chr12 61105278 61105487 -60152043 + ORR1D1 LTR MaLR 166 374 0 1 1051 261 329 58 95 chr12 61105491 61105846 -60151684 - MLT1A1 LTR MaLR -11 397 25 1 1051 2477 36 0 16 chr12 61106974 61107287 -60150243 + L1Md_F3 LINE L1 6276 6583 -1 1 1051 211 196 0 42 chr12 61108210 61108258 -60149272 + GA-rich Low_complexity Low_complexity 1 46 0 1 1051 327 337 11 11 chr12 61108775 61108868 -60148662 - PB1D10 SINE Alu -12 105 13 1 1051 553 333 103 11 chr12 61109478 61109739 -60147791 - ORR1E LTR MaLR -65 294 10 1 1051 279 0 0 0 chr12 61110665 61110696 -60146834 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1051 6724 144 5 7 chr12 61112254 61113343 -60144187 - Lx2B LINE L1 -5 6995 5910 1 1051 2508 186 4 0 chr12 61113343 61113794 -60143736 + Lx2A1 LINE L1 5106 5558 -319 1 1051 959 151 105 0 chr12 61113774 61113946 -60143584 + Lx2A1 LINE L1 5703 5892 -1116 1 1051 309 335 97 38 chr12 61114328 61114514 -60143016 + ORR1D2 LTR MaLR 1 197 -173 1 1051 7962 52 2 0 chr12 61114638 61115846 -60141684 - L1Md_F2 LINE L1 -1 6581 5371 1 1051 676 284 53 5 chr12 61116187 61116396 -60141134 + ID_B1 SINE B4 1 219 -5 1 1051 1353 176 27 0 chr12 61116904 61117165 -60140365 - Lx LINE L1 0 6654 6387 1 1051 588 339 24 63 chr12 61117190 61117445 -60140085 - MT2A LTR ERVL -267 266 22 1 1051 23 0 0 0 chr12 61119211 61119234 -60138296 + AT_rich Low_complexity Low_complexity 1 23 0 1 1051 36379 29 0 8 chr12 61119759 61124681 -60132849 + L1Md_T LINE L1 714 5586 -297 1 1051 8118 43 2 0 chr12 61124681 61125671 -60131859 + L1Md_T LINE L1 5587 6578 -4 1 1051 336 82 371 10 chr12 61125673 61125770 -60131760 + B2_Mm2 SINE B2 60 191 -4 1 1051 389 58 0 0 chr12 61125905 61125957 -60131573 - L1_Mm LINE L1 -3222 2661 2610 1 1051 261 0 0 0 chr12 61125961 61125990 -60131540 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1051 1438 304 11 27 chr12 61126020 61126496 -60131034 - Lx8 LINE L1 -647 6826 6359 1 1051 495 33 0 0 chr12 61127908 61127969 -60129561 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1051 21 95 0 0 chr12 61128127 61128190 -60129340 + AT_rich Low_complexity Low_complexity 1 63 0 1 1051 21 0 0 0 chr12 61128313 61128334 -60129196 + AT_rich Low_complexity Low_complexity 1 21 0 1 1051 894 269 78 44 chr12 61128677 61128963 -60128567 + ORR1E LTR MaLR 1 297 -62 1 1051 1421 23 17 0 chr12 61128963 61129138 -60128392 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 1 1051 783 21 0 0 chr12 61129147 61129240 -60128290 + (TTC)n Simple_repeat Simple_repeat 2 94 0 1 1051 868 244 6 19 chr12 61129330 61129596 -60127934 - Lx6 LINE L1 -3 7457 7153 1 1051 187 344 82 36 chr12 61129893 61130089 -60127441 + L2 LINE L2 2014 2218 -1201 1 1051 740 180 29 0 chr12 61130733 61130872 -60126658 - ORR1C2 LTR MaLR 0 384 242 1 1051 408 373 81 0 chr12 61131124 61131333 -60126197 + MLT1A0 LTR MaLR 138 363 -2 1 1051 340 348 7 35 chr12 61131335 61131478 -60126052 + MLT1A0-int LTR MaLR 1 139 -1596 1 1051 26 93 0 0 chr12 61132159 61132234 -60125296 + AT_rich Low_complexity Low_complexity 1 75 0 1 1051 6056 148 20 3 chr12 61132832 61133841 -60123689 + Lx2 LINE L1 5972 6997 0 1 1051 1361 14 21 0 chr12 61137047 61137336 -60120194 + (TCTA)n Simple_repeat Simple_repeat 1 295 0 1 1051 606 251 27 5 chr12 61138106 61138290 -60119240 + L1_Mur2 LINE L1 3738 3925 -1955 1 1051 7503 50 4 0 chr12 61138295 61139223 -60118307 - L1Md_F2 LINE L1 0 6582 5651 1 1051 6237 194 14 4 chr12 61139231 61140414 -60117116 - Lx2A1 LINE L1 -5 7003 5809 1 1051 3221 233 123 6 chr12 61140415 61141663 -60115867 + Lx5 LINE L1 5656 7050 0 1 1051 227 284 9 29 chr12 61141704 61141809 -60115721 + L1MEf LINE L1 1923 2025 -4217 1 1051 396 311 67 23 chr12 61142031 61142376 -60115154 + L1MEf LINE L1 2283 2642 -3504 1 1051 28 29 0 0 chr12 61142385 61142420 -60115110 + AT_rich Low_complexity Low_complexity 1 35 0 1 1051 191 125 70 70 chr12 61142723 61142766 -60114764 + L3 LINE CR1 4149 4191 -298 1 1051 503 53 13 0 chr12 61142982 61143057 -60114473 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1051 3359 33 2 0 chr12 61143057 61143450 -60114080 - MTA_Mm LTR MaLR 0 396 3 1 1051 839 53 9 0 chr12 61143451 61143564 -60113966 + (CA)n Simple_repeat Simple_repeat 2 115 0 1 1051 3244 175 141 8 chr12 61143667 61144428 -60113102 - L1_Mur2 LINE L1 -691 5186 4325 1 1051 250 45 45 0 chr12 61144428 61144472 -60113058 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 1 1051 1074 82 0 7 chr12 61144472 61144620 -60112910 - B1_Mm SINE Alu 0 147 1 1 1051 2529 190 61 7 chr12 61144648 61145209 -60112321 - L1_Mur2 LINE L1 -3170 2707 2117 1 1051 2498 97 11 0 chr12 61145304 61145656 -60111874 + Lx LINE L1 6299 6654 0 1 1051 748 174 39 0 chr12 61145656 61145811 -60111719 + L1_Mur2 LINE L1 4372 4532 -1345 1 1051 1213 149 0 10 chr12 61146464 61146668 -60110862 + ORR1A2 LTR MaLR 3 204 -123 1 1051 4877 133 15 1 chr12 61146669 61147450 -60110080 + L1_Mus4 LINE L1 5844 6635 -1 2 1051 556 266 62 77 chr12 61147609 61147882 -60109648 - Charlie1a DNA MER1_type -597 858 590 2 1051 5635 229 34 50 chr12 61148118 61149702 -60107828 - Lx5 LINE L1 -51 6999 5408 2 1051 718 321 50 29 chr12 61149959 61150238 -60107292 - MTE-int LTR MaLR -1158 422 138 2 1051 576 123 0 0 chr12 61150527 61150641 -60106889 + (GA)n Simple_repeat Simple_repeat 1 114 0 2 1051 7628 147 5 16 chr12 61151273 61152609 -60104921 + L1_Mur2 LINE L1 3670 4990 -887 2 1051 195 42 0 0 chr12 61152704 61152728 -60104802 + (GGA)n Simple_repeat Simple_repeat 3 26 0 2 1051 6059 240 44 19 chr12 61152737 61153342 -60104188 - Lx7 LINE L1 -446 7250 6631 2 1051 216 0 0 0 chr12 61153342 61153366 -60104164 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1051 6059 240 44 19 chr12 61153366 61154359 -60103171 - Lx7 LINE L1 -1066 6630 5614 2 1051 183 114 0 0 chr12 61154359 61154394 -60103136 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1051 6059 201 50 23 chr12 61154394 61155239 -60102291 - Lx7 LINE L1 -2083 5613 4716 2 1051 1932 184 17 68 chr12 61155239 61155654 -60101876 - ORR1B1 LTR MaLR 0 394 1 2 1051 5964 201 50 23 chr12 61155654 61155750 -60101780 - Lx7 LINE L1 -1165 4715 4624 2 1051 3096 99 5 7 chr12 61155750 61156199 -60101331 - L1_Mus3 LINE L1 -2 6636 6189 2 1051 5964 201 50 23 chr12 61156199 61156450 -60101080 - Lx7 LINE L1 -1257 4623 4372 2 1051 830 188 181 15 chr12 61156449 61156654 -60100876 - RMER1B Other Other 0 1066 828 2 1051 233 174 0 42 chr12 61156655 61156703 -60100827 - Lx5 LINE L1 -137 6913 6868 2 1051 381 287 108 8 chr12 61157347 61157477 -60100053 + RSINE1 SINE B4 5 147 -18 2 1051 36 70 0 0 chr12 61157742 61157813 -60099717 + AT_rich Low_complexity Low_complexity 1 71 0 2 1051 458 222 66 10 chr12 61157956 61158123 -60099407 - B3 SINE B2 -6 210 5 2 1051 400 342 0 0 chr12 61158464 61158584 -60098946 + (CA)n Simple_repeat Simple_repeat 1 120 0 2 1051 842 260 28 32 chr12 61160223 61160486 -60097044 + RLTR12B LTR ERVK 41 298 -230 2 1051 621 0 0 0 chr12 61160486 61160555 -60096975 + (GGA)n Simple_repeat Simple_repeat 3 71 0 2 1051 384 288 75 88 chr12 61160555 61160823 -60096707 + RLTR12B LTR ERVK 237 500 -77 2 1051 1215 183 66 23 chr12 61160823 61161125 -60096405 + L1_Mur3 LINE L1 4035 4349 -1531 2 1051 4279 142 19 35 chr12 61161194 61162595 -60094935 - L1_Mur2 LINE L1 -3967 1910 526 2 1051 1613 5 0 0 chr12 61163115 61163301 -60094229 - L1Md_A LINE L1 0 6582 6397 2 1051 626 249 357 11 chr12 61163468 61163748 -60093782 + MTE2b LTR MaLR 1 377 -2 2 1051 23 0 0 0 chr12 61163834 61163857 -60093673 + AT_rich Low_complexity Low_complexity 1 23 0 2 1051 25 0 0 28 chr12 61164617 61164629 -60092901 + AT_rich Low_complexity Low_complexity 1 12 0 2 1051 2797 117 12 2 chr12 61164629 61165048 -60092482 + Lx3A LINE L1 6559 6981 0 2 1051 25 0 0 28 chr12 61165048 61165071 -60092459 + AT_rich Low_complexity Low_complexity 1 23 0 2 1051 223 178 0 0 chr12 61165431 61165476 -60092054 + A-rich Low_complexity Low_complexity 3 47 0 2 1051 660 314 31 86 chr12 61165700 61165844 -60091686 - MLT1B LTR MaLR -1 389 239 2 1051 2614 184 35 4 chr12 61165844 61166324 -60091206 - RLTR19 LTR ERVK -4 495 1 2 1051 660 314 31 86 chr12 61166324 61166379 -60091151 - MLT1B LTR MaLR -152 238 192 2 1051 1383 93 9 36 chr12 61166379 61166602 -60090928 - L1_Mus3 LINE L1 -3 6635 6419 2 1051 660 314 31 86 chr12 61166602 61166750 -60090780 - MLT1B LTR MaLR -199 191 60 2 1051 1129 291 20 93 chr12 61166927 61167336 -60090194 + MTE2a LTR MaLR 1 379 0 2 1051 3979 134 64 17 chr12 61167354 61167763 -60089767 - RMER6A LTR ERVK 0 756 323 2 1051 783 112 0 0 chr12 61167763 61167888 -60089642 + (TC)n Simple_repeat Simple_repeat 2 126 0 2 1051 3979 134 64 17 chr12 61167888 61168200 -60089330 - RMER6A LTR ERVK -434 322 1 2 1051 372 262 86 39 chr12 61168416 61168650 -60088880 + L1M3 LINE L1 5146 5390 -750 2 1051 5190 58 5 5 chr12 61169156 61169816 -60087714 + L1Md_F2 LINE L1 5923 6582 0 2 1051 588 299 119 24 chr12 61169983 61170394 -60087136 - Lx9 LINE L1 -174 7470 6889 2 1051 8117 36 1 1 chr12 61170401 61171782 -60085748 - L1Md_F2 LINE L1 -2 6580 5202 2 1051 3401 236 53 69 chr12 61171782 61172851 -60084679 + MTC-int LTR MaLR 207 1258 0 2 1051 258 56 0 0 chr12 61172858 61172894 -60084636 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1051 1157 35 0 20 chr12 61172894 61173041 -60084489 - B1_Mm SINE Alu 0 147 4 2 1051 1280 257 26 71 chr12 61173041 61173393 -60084137 + MTD LTR MaLR 84 419 0 2 1051 303 292 41 10 chr12 61173481 61173578 -60083952 + ORR1E LTR MaLR 259 358 -1 2 1051 834 263 80 4 chr12 61173661 61173898 -60083632 + MTC-int LTR MaLR 794 1048 -210 2 1051 567 74 0 0 chr12 61173898 61173979 -60083551 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1051 884 247 74 45 chr12 61174144 61174386 -60083144 + MER70B LTR ERVL 132 380 -198 2 1051 473 224 35 186 chr12 61175170 61175244 -60082286 - RMER6C LTR ERVK 0 720 655 2 1051 2359 121 97 0 chr12 61175244 61175624 -60081906 + RLTR9B2 LTR ERVK 1 417 -3 2 1051 2662 165 123 72 chr12 61175624 61176356 -60081174 - RMER6C LTR ERVK -38 718 2 2 1051 356 235 15 0 chr12 61176579 61176647 -60080883 - ID4_ SINE ID -10 73 5 2 1051 625 277 39 39 chr12 61176748 61177033 -60080497 + RLTR15 LTR ERVK 58 342 -17 2 1051 269 293 48 39 chr12 61177315 61177418 -60080112 - PB1D10 SINE Alu -12 105 2 2 1051 377 242 217 0 chr12 61177499 61177619 -60079911 - B1_Mur1 SINE Alu -1 148 3 2 1051 333 254 74 0 chr12 61178050 61178172 -60079358 - L1M4 LINE L1 -1072 5074 4944 2 1051 702 271 119 7 chr12 61178650 61178944 -60078586 - L1MA5 LINE L1 -295 6005 5679 2 1051 439 126 21 0 chr12 61179718 61179813 -60077717 + (GA)n Simple_repeat Simple_repeat 2 98 0 2 1051 420 190 231 0 chr12 61180909 61181030 -60076500 - B1_Mur4 SINE Alu -1 149 1 2 1051 450 0 0 0 chr12 61181591 61181641 -60075889 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1051 2176 219 74 16 chr12 61183082 61183582 -60073948 - Lx7 LINE L1 -262 7434 6906 2 1051 5093 41 3 3 chr12 61183604 61184237 -60073293 - L1Md_F3 LINE L1 -1 6583 5951 2 1051 8568 39 3 1 chr12 61184237 61185362 -60072168 + L1Md_F3 LINE L1 4818 5944 -640 2 1051 1046 201 314 16 chr12 61185365 61185678 -60071852 - L1_Rod LINE L1 -4490 1357 948 2 1051 423 0 0 0 chr12 61185678 61185725 -60071805 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1051 1046 251 60 36 chr12 61185725 61185940 -60071590 - L1_Rod LINE L1 -6661 947 729 2 1051 2652 246 50 65 chr12 61186066 61187074 -60070456 + Lx9 LINE L1 3786 4778 -1069 2 1051 1420 280 70 40 chr12 61187071 61187777 -60069753 + Lx9 LINE L1 5429 6202 -1271 2 1051 207 0 0 0 chr12 61187777 61187800 -60069730 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1051 1106 359 86 41 chr12 61187800 61187828 -60069702 + Lx9 LINE L1 6203 6230 -1243 2 1051 4393 66 5 0 chr12 61187828 61188392 -60069138 + L1Md_F2 LINE L1 6003 6569 -13 2 1051 1106 359 86 41 chr12 61188392 61188408 -60069122 + Lx9 LINE L1 6231 6265 -1208 2 1051 351 0 0 0 chr12 61188408 61188447 -60069083 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1051 4192 248 71 22 chr12 61188447 61189495 -60068035 + Lx9 LINE L1 6266 7477 -167 2 1051 477 0 0 0 chr12 61189495 61189548 -60067982 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1051 4192 247 71 21 chr12 61189548 61189678 -60067852 + Lx9 LINE L1 7478 7643 -1 2 1051 264 262 109 14 chr12 61189784 61189931 -60067599 + L1MCa LINE L1 1392 1552 -4865 2 1051 348 281 108 28 chr12 61190223 61190509 -60067021 + L1MCa LINE L1 2148 2454 -3867 2 1051 6154 85 23 23 chr12 61190509 61191484 -60066046 - MusHAL1 LINE L1 -1391 1321 347 2 1051 6793 113 12 1 chr12 61191479 61192454 -60065076 + Lx LINE L1 5663 6648 -6 2 1051 23 0 0 0 chr12 61193116 61193139 -60064391 + AT_rich Low_complexity Low_complexity 1 23 0 2 1051 227 264 81 104 chr12 61193315 61193488 -60064042 - L1M4 LINE L1 -1099 5047 4879 2 1051 263 261 18 26 chr12 61193557 61193671 -60063859 - Lx9 LINE L1 -8 7636 7524 2 1051 1252 218 189 0 chr12 61193706 61194045 -60063485 - Lx9 LINE L1 -242 7402 7000 2 1051 566 242 130 11 chr12 61194279 61194463 -60063067 - B3 SINE B2 -7 209 4 2 1051 31 0 0 0 chr12 61194472 61194503 -60063027 + AT_rich Low_complexity Low_complexity 1 31 0 2 1051 192 40 0 0 chr12 61194681 61194706 -60062824 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1051 1047 129 0 0 chr12 61195325 61195503 -60062027 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 1051 1489 309 67 16 chr12 61196487 61196761 -60060769 + Lx6 LINE L1 6838 7116 -344 2 1051 477 34 0 0 chr12 61196761 61196820 -60060710 + (CATA)n Simple_repeat Simple_repeat 3 61 0 2 1051 1489 309 67 16 chr12 61196820 61196903 -60060627 + Lx6 LINE L1 7117 7206 -254 2 1051 794 20 20 0 chr12 61196903 61197002 -60060528 + (TTTC)n Simple_repeat Simple_repeat 4 104 0 2 1051 1489 309 67 16 chr12 61197002 61197134 -60060396 + Lx6 LINE L1 7207 7351 -109 2 1051 396 392 0 7 chr12 61197743 61197887 -60059643 + RSINE1 SINE B4 20 162 -3 2 1051 244 186 33 17 chr12 61197890 61197950 -60059580 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1051 23 33 0 0 chr12 61198070 61198100 -60059430 + AT_rich Low_complexity Low_complexity 1 30 0 2 1051 21 0 0 0 chr12 61198412 61198433 -60059097 + AT_rich Low_complexity Low_complexity 1 21 0 2 1051 6891 126 24 3 chr12 61198712 61200447 -60057083 - L1_Mus4 LINE L1 -6 6630 4856 2 1051 2641 99 10 5 chr12 61200440 61200836 -60056694 + MusHAL1 LINE L1 1260 1657 -1055 2 1051 306 331 84 24 chr12 61201590 61202054 -60055476 + L1M7 LINE L1 905 1396 -4822 2 1051 3061 43 0 0 chr12 61202110 61202480 -60055050 + L1Md_F3 LINE L1 6200 6569 -15 2 1051 361 271 93 32 chr12 61202631 61202878 -60054652 - Lx7 LINE L1 -2 7694 7428 2 1051 660 26 0 0 chr12 61202878 61202956 -60054574 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 1051 361 271 93 32 chr12 61202956 61202986 -60054544 - Lx7 LINE L1 -269 7427 7400 2 1051 1826 233 36 71 chr12 61203033 61203481 -60054049 - Lx7 LINE L1 -1013 6683 6252 2 1051 5100 201 94 145 chr12 61203481 61203947 -60053583 - Lx7 LINE L1 -126 5754 5256 2 1051 243 0 0 0 chr12 61203947 61203974 -60053556 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1051 5100 201 94 145 chr12 61203974 61204578 -60052952 - Lx7 LINE L1 -625 5255 4639 2 1051 468 0 0 0 chr12 61204578 61204630 -60052900 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1051 5100 201 94 145 chr12 61204630 61205046 -60052484 - Lx7 LINE L1 -1242 4638 4174 2 1051 465 90 0 0 chr12 61205046 61205113 -60052417 + (TATG)n Simple_repeat Simple_repeat 2 68 0 2 1051 5100 201 94 145 chr12 61205113 61205782 -60051748 - Lx7 LINE L1 -1707 4173 3705 2 1051 1290 150 31 0 chr12 61205784 61206010 -60051520 - Lx2 LINE L1 0 6997 6765 2 1051 6789 137 4 12 chr12 61205999 61207170 -60050360 - Lx2 LINE L1 -352 6645 5488 2 1051 1239 222 66 3 chr12 61207170 61207517 -60050013 - Lx7 LINE L1 -2181 3699 3331 2 1051 7732 118 51 0 chr12 61207523 61208722 -60048808 - Lx3_Mus LINE L1 -3 7006 5747 2 1051 21034 145 43 8 chr12 61208772 61209102 -60048428 + L1_Mus3 LINE L1 2045 2357 -3526 2 1051 374 0 22 0 chr12 61209102 61209148 -60048382 + (CAA)n Simple_repeat Simple_repeat 2 48 0 2 131 21034 137 43 6 chr12 61209148 61213241 -60044289 + L1_Mus3 LINE L1 2358 6638 0 2 1052 1630 204 24 104 chr12 61213243 61213861 -60043669 - Lx7 LINE L1 -2561 3319 2751 2 1052 334 221 7 7 chr12 61213861 61213998 -60043532 + (TG)n Simple_repeat Simple_repeat 1 137 0 2 1052 2077 243 50 7 chr12 61214012 61214795 -60042735 - Lx7 LINE L1 -4371 1509 690 2 1052 281 326 29 50 chr12 61214938 61215077 -60042453 + MTD LTR MaLR 118 253 -166 2 1052 1282 76 18 0 chr12 61215207 61215378 -60042152 + L1Md_F2 LINE L1 5413 5586 -297 2 1052 7830 53 1 25 chr12 61215378 61216398 -60041132 + L1Md_F2 LINE L1 5587 6582 0 2 1052 34 0 0 0 chr12 61216513 61216547 -60040983 + AT_rich Low_complexity Low_complexity 1 34 0 3 1052 551 318 20 15 chr12 61216960 61217161 -60040369 + B3 SINE B2 1 202 -14 3 1052 247 98 39 19 chr12 61217166 61217185 -60040345 + polypurine Low_complexity Low_complexity 2 20 0 3 1052 1329 73 0 0 chr12 61217185 61217363 -60040167 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 3 1052 247 98 39 19 chr12 61217363 61217395 -60040135 + polypurine Low_complexity Low_complexity 21 54 0 3 1052 204 40 0 0 chr12 61217493 61217518 -60040012 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 3 1052 3664 123 14 31 chr12 61217518 61218106 -60039424 - Lx LINE L1 -12 6642 6065 3 1052 294 337 164 42 chr12 61219127 61219341 -60038189 + RMER15 LTR ERVL 336 575 0 3 1052 252 307 0 120 chr12 61220176 61220276 -60037254 - RSINE1 SINE B4 0 165 78 3 1052 288 329 12 12 chr12 61220387 61220473 -60037057 - B4A SINE B4 -204 88 3 3 1052 840 163 0 0 chr12 61221266 61221407 -60036123 - L1_Mur2 LINE L1 -1447 4430 4290 3 1052 5401 148 48 2 chr12 61221404 61222488 -60035042 + Lx LINE L1 4813 5962 -692 3 1052 228 310 23 0 chr12 61222514 61222601 -60034929 + CT-rich Low_complexity Low_complexity 1 89 0 3 1052 245 161 34 59 chr12 61224336 61224455 -60033075 + (TTATA)n Simple_repeat Simple_repeat 5 120 0 3 1052 236 268 116 0 chr12 61224503 61224615 -60032915 - L1_Mur2 LINE L1 -1553 4327 4203 3 1052 283 300 0 0 chr12 61224638 61224708 -60032822 - B3A SINE B2 -127 71 2 3 1052 5651 71 29 13 chr12 61225958 61226718 -60030812 - L1Md_F2 LINE L1 -22 6560 5789 3 1052 464 70 0 0 chr12 61226715 61226772 -60030758 - L1Md_F2 LINE L1 -282 5601 5545 3 1052 1340 100 0 0 chr12 61226769 61226969 -60030561 - L1Md_F2 LINE L1 -2639 3244 3045 3 1052 8173 130 33 148 chr12 61226969 61229663 -60027867 - L1Md_F2 LINE L1 -3280 2603 218 3 1052 330 371 33 13 chr12 61229969 61230122 -60027408 - MLT1A LTR MaLR -218 156 1 3 1052 477 0 0 0 chr12 61230624 61230677 -60026853 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1052 7773 52 15 3 chr12 61231508 61232484 -60025046 - L1Md_F2 LINE L1 -7 6575 5588 3 1052 3636 124 0 7 chr12 61232805 61233355 -60024175 - L1_Mus4 LINE L1 -3 6633 6088 3 1052 3190 110 17 2 chr12 61233355 61233829 -60023701 + L1_Mus4 LINE L1 5598 6078 -558 3 1052 4487 39 0 0 chr12 61234271 61234804 -60022726 - L1Md_T LINE L1 -1 6581 6049 3 1052 300 27 0 0 chr12 61235815 61235852 -60021678 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1052 551 15 0 14 chr12 61235852 61235920 -60021610 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1052 470 282 85 8 chr12 61236243 61236410 -60021120 - MER20 DNA MER1_type -610 173 1 3 1052 543 56 0 0 chr12 61236670 61236741 -60020789 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 1052 23 0 0 0 chr12 61237369 61237392 -60020138 + AT_rich Low_complexity Low_complexity 1 23 0 3 1052 321 366 103 24 chr12 61237582 61237732 -60019798 + B3A SINE B2 1 165 -33 3 1052 204 97 0 0 chr12 61237732 61237763 -60019767 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1052 321 366 103 24 chr12 61237763 61237777 -60019753 + B3A SINE B2 166 178 -20 3 1052 201 149 64 0 chr12 61237778 61237825 -60019705 + (CAGAGA)n Simple_repeat Simple_repeat 5 54 0 3 1052 426 193 42 0 chr12 61237855 61237974 -60019556 + Lx9 LINE L1 7521 7644 0 3 1052 1124 147 107 10 chr12 61238010 61238216 -60019314 + URR1A DNA MER1_type 1 226 0 3 1052 613 163 6 22 chr12 61238592 61238774 -60018756 + CT-rich Low_complexity Low_complexity 2 180 0 3 1052 1105 84 12 0 chr12 61238787 61238954 -60018576 + (TTC)n Simple_repeat Simple_repeat 2 170 0 3 1052 207 0 0 0 chr12 61239507 61239530 -60018000 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1052 934 123 7 0 chr12 61239530 61239668 -60017862 - B1_Mus1 SINE Alu -9 139 1 3 1052 302 379 118 38 chr12 61239836 61240124 -60017406 - RLTR25A LTR ERVK -792 311 1 3 1052 196 338 0 14 chr12 61241487 61241556 -60015974 + MIR SINE MIR 116 183 -79 3 1052 238 367 69 41 chr12 61242840 61242985 -60014545 + MLT1J-int LTR MaLR 1218 1366 -21 3 1052 262 268 195 0 chr12 61243961 61244043 -60013487 + B1F1 SINE Alu 1 98 -51 3 1052 22 0 0 0 chr12 61244337 61244359 -60013171 + AT_rich Low_complexity Low_complexity 1 22 0 3 1052 270 0 0 0 chr12 61246769 61246799 -60010731 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1052 807 112 0 0 chr12 61246799 61246941 -60010589 + (GA)n Simple_repeat Simple_repeat 2 144 0 3 1052 283 347 39 74 chr12 61248881 61249111 -60008419 + MIRb SINE MIR 45 266 -2 3 1052 431 211 21 0 chr12 61249300 61249395 -60008135 - Lx4A LINE L1 -666 6392 6296 3 1052 1043 324 133 17 chr12 61249448 61250193 -60007337 - Lx8 LINE L1 -557 6916 6086 3 1052 1017 318 96 48 chr12 61250211 61250826 -60006704 - Lx8 LINE L1 -1727 5917 5266 3 1052 234 23 70 0 chr12 61250841 61250884 -60006646 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 3 1052 414 0 0 0 chr12 61250923 61250969 -60006561 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1052 204 219 27 27 chr12 61251226 61251301 -60006229 + A-rich Low_complexity Low_complexity 4 78 0 3 1052 2234 257 67 25 chr12 61251313 61251966 -60005564 + Lx6 LINE L1 6761 7441 -19 3 1052 584 301 34 0 chr12 61252013 61252282 -60005248 - Lx8 LINE L1 -855 5022 4745 3 1052 512 273 39 5 chr12 61252282 61252488 -60005042 - L1M2 LINE L1 -2346 3797 3585 3 1052 287 302 20 30 chr12 61252698 61252797 -60004733 - MLT1F2 LTR MaLR -18 542 445 3 1052 339 328 40 24 chr12 61253089 61253214 -60004316 - MLT1F2 LTR MaLR -420 140 14 3 1052 6640 145 30 5 chr12 61253295 61254175 -60003355 + Lx3C LINE L1 4743 5630 -256 3 1052 432 0 0 0 chr12 61254175 61254223 -60003307 + (CACAC)n Simple_repeat Simple_repeat 2 49 0 3 1052 6640 187 64 31 chr12 61254223 61255524 -60002006 + Lx3C LINE L1 5628 7056 -2 3 1052 385 239 28 56 chr12 61255917 61256059 -60001471 - RLTR16 LTR ERVK -351 154 17 3 1052 341 302 66 13 chr12 61256799 61256950 -60000580 + RSINE1 SINE B4 4 162 -3 3 1052 1141 54 0 39 chr12 61258055 61258208 -59999322 + B1_Mus2 SINE Alu 1 147 0 3 1052 495 0 0 0 chr12 61258208 61258263 -59999267 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3 1052 21 0 0 0 chr12 61258279 61258300 -59999230 + AT_rich Low_complexity Low_complexity 1 21 0 3 1052 22 56 0 0 chr12 61259461 61259497 -59998033 + AT_rich Low_complexity Low_complexity 1 36 0 3 1052 1415 308 373 43 chr12 61259581 61259896 -59997634 + Lx9 LINE L1 6407 6834 -810 3 1052 1154 214 84 144 chr12 61259896 61260299 -59997231 - RLTR30 LTR ERV1 0 379 1 3 1052 1415 292 84 34 chr12 61260299 61260651 -59996879 + Lx9 LINE L1 6835 7195 -449 3 1052 1072 90 0 0 chr12 61260667 61260811 -59996719 + B1_Mus2 SINE Alu 1 144 -3 3 1052 342 0 0 0 chr12 61260811 61260849 -59996681 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1052 195 69 0 0 chr12 61260894 61260923 -59996607 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1052 1426 172 27 7 chr12 61261028 61261320 -59996210 + L1Md_Gf LINE L1 194 491 -6031 3 1052 8460 66 6 1 chr12 61261314 61262410 -59995120 + L1Md_F2 LINE L1 4485 5586 -297 3 1052 7707 55 23 0 chr12 61262410 61263384 -59994146 + L1Md_F2 LINE L1 5587 6582 0 3 1052 528 16 0 0 chr12 61263518 61263579 -59993951 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1052 426 39 0 0 chr12 61263579 61263630 -59993900 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1052 241 254 119 0 chr12 61264132 61264199 -59993331 + B1F2 SINE Alu 23 97 -52 3 1052 408 310 156 48 chr12 61265838 61266543 -59990987 - L1MCa LINE L1 -3245 3076 2298 3 1052 303 243 53 18 chr12 61266663 61266776 -59990754 - L1MCa LINE L1 -4393 2115 1999 3 1052 273 351 76 8 chr12 61266798 61266930 -59990600 - MLT1A LTR MaLR -5 369 229 3 1052 785 183 30 0 chr12 61267060 61267191 -59990339 + B1_Mus1 SINE Alu 2 136 -12 3 1052 2918 26 12 0 chr12 61270336 61270681 -59986849 + L1Md_T LINE L1 5238 5586 -297 3 1052 8008 55 0 0 chr12 61270681 61271677 -59985853 + L1Md_T LINE L1 5587 6582 0 3 1052 6715 32 1 0 chr12 61271676 61272475 -59985055 + L1Md_T LINE L1 5783 6582 0 3 1052 283 137 0 38 chr12 61272510 61272551 -59984979 - L1Md_F LINE L1 -5886 633 594 3 1052 4260 78 19 5 chr12 61272551 61273128 -59984402 + L1Md_F2 LINE L1 5986 6570 -12 3 1052 283 137 0 38 chr12 61273128 61273139 -59984391 - L1Md_F LINE L1 -5926 593 583 3 1052 1587 264 67 15 chr12 61273175 61273640 -59983890 + Lx6 LINE L1 6946 7434 -26 3 1052 207 100 0 0 chr12 61273640 61273670 -59983860 + (TAAAA)n Simple_repeat Simple_repeat 4 33 0 3 1052 213 383 16 66 chr12 61273897 61274140 -59983390 + MIRb SINE MIR 35 265 -3 3 1052 347 330 112 54 chr12 61274326 61274550 -59982980 - MLT1F LTR MaLR -107 441 205 3 1052 207 0 0 0 chr12 61274785 61274808 -59982722 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1052 231 345 89 28 chr12 61274851 61275030 -59982500 - MLT1F-int LTR MaLR -12 1397 1208 3 1052 460 384 153 33 chr12 61275293 61275748 -59981782 - MLT1F-int LTR MaLR -585 824 306 3 1052 209 30 61 0 chr12 61275748 61275781 -59981749 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 1052 460 384 153 33 chr12 61275781 61276049 -59981481 - MLT1F-int LTR MaLR -1104 305 15 3 1052 553 265 58 16 chr12 61277482 61277668 -59979862 + B3 SINE B2 11 192 -3 3 1052 504 246 107 0 chr12 61278197 61278319 -59979211 + ID_B1 SINE B4 90 224 0 3 1052 1814 166 60 16 chr12 61278504 61278929 -59978601 - RMER6A LTR ERVK -288 432 1 3 1052 185 336 45 51 chr12 61279240 61279397 -59978133 - L2a LINE L2 -149 3277 3122 3 1052 966 106 0 37 chr12 61279408 61279595 -59977935 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1052 290 205 13 0 chr12 61279926 61280004 -59977526 + CT-rich Low_complexity Low_complexity 3 81 0 3 1052 348 83 0 0 chr12 61280049 61280097 -59977433 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1052 271 333 45 18 chr12 61280265 61280375 -59977155 + Lx7 LINE L1 6808 6920 -776 3 1052 405 0 0 0 chr12 61280388 61280433 -59977097 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1052 216 0 0 0 chr12 61280433 61280456 -59977074 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1052 1114 82 0 0 chr12 61280475 61280622 -59976908 + B1_Mm SINE Alu 1 147 0 3 1052 202 71 67 56 chr12 61280624 61280714 -59976816 + A-rich Low_complexity Low_complexity 1 91 0 3 1052 359 71 21 86 chr12 61280737 61280923 -59976607 + A-rich Low_complexity Low_complexity 1 174 0 3 1052 278 26 26 0 chr12 61280939 61280978 -59976552 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 1052 469 313 71 92 chr12 61280985 61281365 -59976165 + Lx7 LINE L1 6964 7335 -361 3 1052 378 314 39 31 chr12 61282059 61282315 -59975215 - L1MEf LINE L1 -3605 2541 2284 3 1052 332 317 46 40 chr12 61282473 61282647 -59974883 - L1MEf LINE L1 -4145 2097 1923 3 1052 318 50 0 0 chr12 61283683 61283723 -59973807 + (TCC)n Simple_repeat Simple_repeat 1 40 0 3 1052 524 193 24 48 chr12 61283723 61283848 -59973682 - B2_Mm2 SINE B2 -2 193 72 3 1052 1363 262 68 58 chr12 61285136 61285318 -59972212 + MTD LTR MaLR 1 185 -234 3 1052 3789 33 0 2 chr12 61285318 61285770 -59971760 + L1Md_F2 LINE L1 6130 6580 -2 3 1052 1363 262 68 58 chr12 61285770 61286001 -59971529 + MTD LTR MaLR 186 418 -1 3 1052 3481 134 29 12 chr12 61287616 61288211 -59969319 + Lx2 LINE L1 6391 6995 -2 4 1052 1143 221 77 26 chr12 61288892 61288964 -59968566 - Lx9 LINE L1 -2 7642 7556 4 1052 432 0 0 0 chr12 61288964 61289012 -59968518 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 4 1052 1143 221 77 26 chr12 61289012 61289279 -59968251 - Lx9 LINE L1 -89 7555 7286 4 1052 244 316 41 123 chr12 61290342 61290512 -59967018 - MLT-int LTR MaLR -578 1157 1002 4 1052 402 74 0 0 chr12 61290564 61290618 -59966912 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1052 24 0 0 0 chr12 61290637 61290661 -59966869 + AT_rich Low_complexity Low_complexity 1 24 0 4 1052 235 330 93 0 chr12 61291808 61291905 -59965625 - L2a LINE L2 -5 3421 3316 4 1052 21 36 0 0 chr12 61291983 61292011 -59965519 + AT_rich Low_complexity Low_complexity 1 28 0 4 1052 619 268 241 46 chr12 61292214 61292548 -59964982 + Lx8 LINE L1 6410 6808 -665 4 1052 3336 62 0 18 chr12 61292604 61293049 -59964481 - L1Md_F2 LINE L1 -1 6581 6145 4 1052 406 83 14 14 chr12 61293045 61293118 -59964412 - Lx2A LINE L1 -13 6995 6923 4 1052 7148 171 28 60 chr12 61293118 61294838 -59962692 - L1_Mur2 LINE L1 -222 5658 3855 4 1052 449 110 0 14 chr12 61294987 61295061 -59962469 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 1052 1094 200 164 21 chr12 61295068 61295349 -59962181 - RMER6C LTR ERVK 0 690 370 4 1052 328 296 57 11 chr12 61295409 61295651 -59961879 + L1_Rod LINE L1 1759 2010 -3870 4 1052 23 54 0 0 chr12 61295675 61295712 -59961818 + AT_rich Low_complexity Low_complexity 1 37 0 4 1052 1124 281 46 41 chr12 61295817 61296232 -59961298 + Lx8 LINE L1 6215 6631 -842 4 1052 1661 207 292 35 chr12 61296244 61296687 -59960843 - RMER19C LTR ERVK 0 611 51 4 1052 2394 226 47 88 chr12 61296687 61297578 -59959952 + RLTR13A LTR ERVK 1 855 0 4 1052 1661 220 84 45 chr12 61297578 61297629 -59959901 - RMER19C LTR ERVK -561 50 1 4 1052 744 255 27 0 chr12 61297633 61297817 -59959713 + Lx8 LINE L1 6642 6830 -643 4 1052 1014 346 33 29 chr12 61297905 61298425 -59959105 + Lx8 LINE L1 6952 7473 0 4 1052 239 269 0 37 chr12 61299736 61299817 -59957713 - ID2 SINE ID -2 81 4 4 1052 676 300 161 29 chr12 61299964 61300280 -59957250 + MLT1A0 LTR MaLR 3 360 -5 4 1052 236 320 0 0 chr12 61300711 61300786 -59956744 - ID4_ SINE ID -8 75 1 4 1052 273 287 130 15 chr12 61300793 61300924 -59956606 - B1F1 SINE Alu -3 146 1 4 1052 261 0 0 0 chr12 61300944 61300973 -59956557 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1052 912 83 0 0 chr12 61300981 61301126 -59956404 - L1_Mus4 LINE L1 -3 6633 6489 4 1052 252 0 0 0 chr12 61301303 61301331 -59956199 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1052 315 0 0 0 chr12 61301331 61301365 -59956165 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1052 592 282 27 48 chr12 61301461 61301647 -59955883 + B3A SINE B2 1 182 -16 4 1052 1047 151 0 8 chr12 61301648 61302001 -59955529 + (CA)n Simple_repeat Simple_repeat 1 350 0 4 1052 30 0 0 0 chr12 61302025 61302055 -59955475 + AT_rich Low_complexity Low_complexity 1 30 0 4 1052 36364 32 2 8 chr12 61303186 61308357 -59949173 + L1Md_A LINE L1 452 5586 -297 4 1052 8240 38 1 0 chr12 61308357 61309352 -59948178 + L1Md_A LINE L1 5587 6582 0 4 1052 24 0 0 0 chr12 61309795 61309819 -59947711 + AT_rich Low_complexity Low_complexity 1 24 0 4 1052 733 211 13 39 chr12 61310880 61311033 -59946497 - B1_Mur3 SINE Alu 0 149 1 4 1052 247 267 32 32 chr12 61311437 61311530 -59946000 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 4 1052 239 304 68 51 chr12 61311761 61311774 -59945756 - L1MC4a LINE L1 -1254 6628 6617 4 1052 300 27 0 0 chr12 61311774 61311811 -59945719 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 4 1052 239 304 68 51 chr12 61311811 61311974 -59945556 - L1MC4a LINE L1 -1266 6616 6449 4 1052 341 307 131 18 chr12 61312625 61312781 -59944749 - MLT1A0 LTR MaLR -240 168 8 4 1052 989 343 73 22 chr12 61313263 61313713 -59943817 - MLT-int LTR MaLR 0 1735 1263 4 1052 386 379 171 17 chr12 61314382 61314669 -59942861 - MLT-int LTR MaLR -491 1244 914 4 1052 575 333 76 30 chr12 61314977 61315305 -59942225 - MLT-int LTR MaLR -1196 539 197 4 1052 298 301 10 10 chr12 61315354 61315458 -59942072 - MLT-int LTR MaLR -1630 105 2 4 1052 300 284 71 27 chr12 61316278 61316390 -59941140 + L1M5 LINE L1 3006 3122 -3024 4 1052 21 36 0 0 chr12 61316402 61316430 -59941100 + AT_rich Low_complexity Low_complexity 1 28 0 4 1052 3949 209 48 27 chr12 61316430 61317341 -59940189 - Lx5 LINE L1 -3 7047 6118 4 1052 3087 269 89 13 chr12 61317314 61317798 -59939732 - Lx6 LINE L1 -57 7403 6911 4 1052 609 14 0 0 chr12 61317798 61317868 -59939662 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 1052 3087 296 62 65 chr12 61317868 61318698 -59938832 - Lx6 LINE L1 -550 6910 5783 4 1052 236 176 48 29 chr12 61318700 61318805 -59938725 - Lx6 LINE L1 -26 7434 7328 4 1052 1329 325 47 48 chr12 61318803 61319340 -59938190 - Lx5 LINE L1 -36 7014 6479 4 1052 627 333 93 4 chr12 61319338 61319618 -59937912 - Lx5 LINE L1 -688 6362 6058 4 1052 4821 201 63 25 chr12 61319696 61320878 -59936652 - L1_Mur3 LINE L1 -246 5634 4409 4 1052 523 194 109 65 chr12 61320878 61321013 -59936517 + ORR1B1 LTR MaLR 34 174 -220 4 1052 887 240 134 69 chr12 61321013 61321304 -59936226 + RLTR20C LTR ERVK 1 310 -224 4 1052 833 164 30 37 chr12 61321298 61321462 -59936068 + RLTR20C LTR ERVK 416 578 0 4 1052 448 219 10 40 chr12 61321475 61321575 -59935955 + ORR1A4 LTR MaLR 93 189 -140 4 1052 1693 158 77 21 chr12 61321575 61321963 -59935567 - L1_Mur3 LINE L1 -1679 4201 3792 4 1052 267 303 106 53 chr12 61322996 61323373 -59934157 + L1M5 LINE L1 4694 5090 -1056 4 1052 1108 95 0 0 chr12 61323468 61323616 -59933914 + B1_Mus1 SINE Alu 1 148 0 4 1052 428 153 0 8 chr12 61323618 61323737 -59933793 + A-rich Low_complexity Low_complexity 3 120 0 4 1052 361 157 298 87 chr12 61324474 61324635 -59932895 + B2_Mm2 SINE B2 1 195 0 4 1052 330 332 58 26 chr12 61325172 61325361 -59932169 - B3A SINE B2 -2 196 2 4 1052 276 125 50 50 chr12 61325470 61325571 -59931959 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 4 1052 969 269 27 87 chr12 61325986 61326389 -59931141 + MTEb LTR MaLR 1 379 0 4 1052 244 355 79 79 chr12 61326908 61326959 -59930571 + B4 SINE B4 1 50 -242 4 1052 1571 214 98 0 chr12 61326959 61327318 -59930212 + ORR1B1 LTR MaLR 1 394 0 4 1052 244 355 79 79 chr12 61327318 61327495 -59930035 + B4 SINE B4 51 229 -63 4 1052 23 54 0 0 chr12 61327598 61327635 -59929895 + AT_rich Low_complexity Low_complexity 1 37 0 4 1052 4141 164 11 48 chr12 61327665 61328465 -59929065 + RMER12 LTR ERVK 1 771 -551 4 1052 639 98 0 0 chr12 61328467 61328559 -59928971 + (TG)n Simple_repeat Simple_repeat 2 93 0 4 1052 4068 196 55 179 chr12 61328559 61329538 -59927992 + RMER12 LTR ERVK 4 858 -464 4 1052 5866 1 0 0 chr12 61329538 61330186 -59927344 + L1Md_A LINE L1 5935 6582 0 4 1052 4068 196 55 179 chr12 61330186 61330387 -59927143 + RMER12 LTR ERVK 859 973 -349 4 1052 363 44 0 0 chr12 61330387 61330432 -59927098 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1052 4068 196 55 179 chr12 61330432 61330755 -59926775 + RMER12 LTR ERVK 974 1322 0 4 1052 777 22 0 0 chr12 61330763 61330854 -59926676 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 1052 522 0 0 0 chr12 61330854 61330911 -59926619 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1052 497 30 0 15 chr12 61330952 61331020 -59926510 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1052 357 236 64 111 chr12 61331029 61331156 -59926374 + RMER12 LTR ERVK 987 1082 -240 4 1052 24 0 0 0 chr12 61331416 61331440 -59926090 + AT_rich Low_complexity Low_complexity 1 24 0 4 1052 266 320 13 0 chr12 61331661 61331736 -59925794 + ID4 SINE ID 8 83 0 4 1052 541 266 0 0 chr12 61332246 61332359 -59925171 + RMER12 LTR ERVK 782 894 -428 4 1052 347 280 84 8 chr12 61332439 61332558 -59924972 + MTE-int LTR MaLR 1453 1580 0 4 1052 800 299 112 4 chr12 61332578 61332837 -59924693 + MTEa LTR MaLR 90 376 -3 4 1052 938 309 133 27 chr12 61332980 61333506 -59924024 + Lx8 LINE L1 6886 7467 -6 4 1052 523 88 0 0 chr12 61333768 61333836 -59923694 + L1Md_F2 LINE L1 5519 5586 -297 4 1052 8165 42 4 0 chr12 61333836 61334825 -59922705 + L1Md_F2 LINE L1 5587 6579 -3 4 1052 227 310 139 74 chr12 61335309 61335431 -59922099 + MER67C LTR ERV1 582 711 0 4 1052 651 125 0 0 chr12 61335958 61336062 -59921468 + (TA)n Simple_repeat Simple_repeat 2 105 0 4 1052 863 178 103 52 chr12 61336673 61336886 -59920644 - URR1B DNA MER1_type 0 225 2 4 1052 206 151 38 0 chr12 61336952 61337005 -59920525 + GA-rich Low_complexity Low_complexity 3 57 0 4 1052 25 0 0 0 chr12 61337758 61337783 -59919747 + AT_rich Low_complexity Low_complexity 1 25 0 4 1052 681 251 113 16 chr12 61338358 61338544 -59918986 - ID_B1 SINE B4 -20 204 1 4 1052 5244 36 11 2 chr12 61338621 61339255 -59918275 - L1Md_F3 LINE L1 -1 6583 5944 4 1052 2538 297 94 17 chr12 61339449 61340447 -59917083 + Lx9 LINE L1 6251 7325 -319 4 1052 596 274 83 14 chr12 61340490 61340708 -59916822 + Lx7 LINE L1 5446 5678 -202 4 1052 553 237 128 17 chr12 61340724 61340904 -59916626 - Lx5 LINE L1 0 7050 6851 4 1052 468 267 0 8 chr12 61340904 61341025 -59916505 + Lx7 LINE L1 5670 5789 -1907 4 1052 434 328 16 25 chr12 61341387 61341509 -59916021 + B1_Mur1 SINE Alu 29 149 0 4 1053 194 150 0 24 chr12 61341795 61341836 -59915694 + C-rich Low_complexity Low_complexity 3 42 0 4 1053 458 136 12 0 chr12 61342022 61342103 -59915427 + (TCC)n Simple_repeat Simple_repeat 3 84 0 4 1053 700 276 21 10 chr12 61342372 61342566 -59914964 - ID_B1 SINE B4 0 224 29 4 1053 2495 192 72 6 chr12 61342624 61343095 -59914435 + Lx4A LINE L1 6555 7056 -2 4 1053 256 220 0 0 chr12 61343120 61343179 -59914351 + L1MC LINE L1 4478 4536 -1610 4 1053 341 254 140 83 chr12 61343187 61343415 -59914115 + Lx8 LINE L1 7225 7465 -8 4 1053 496 146 156 0 chr12 61343442 61343538 -59913992 + B1_Mur3 SINE Alu 31 141 -8 4 1053 492 18 0 0 chr12 61343542 61343599 -59913931 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 4 1053 294 65 16 31 chr12 61343731 61343795 -59913735 - L1_Mus3 LINE L1 0 6638 6576 4 1053 183 319 122 32 chr12 61343890 61344013 -59913517 + MIRb SINE MIR 61 194 -74 4 1053 341 240 13 0 chr12 61344313 61344388 -59913142 - MTE2a LTR MaLR 0 379 304 4 1053 248 318 0 29 chr12 61344395 61344463 -59913067 - Lx8 LINE L1 -578 6895 6830 4 1053 23 0 0 0 chr12 61344483 61344506 -59913024 + AT_rich Low_complexity Low_complexity 1 23 0 4 1053 444 268 34 27 chr12 61344594 61344740 -59912790 - MTD LTR MaLR -2 417 271 4 1053 2245 173 3 0 chr12 61344740 61345121 -59912409 + Lx2 LINE L1 6428 6809 -188 4 1053 247 355 40 0 chr12 61345800 61345876 -59911654 - B1F SINE Alu -65 84 6 4 1053 195 204 0 0 chr12 61346150 61346199 -59911331 + A-rich Low_complexity Low_complexity 1 49 0 5 1053 564 278 110 6 chr12 61346512 61346675 -59910855 + ID_B1 SINE B4 2 181 -43 5 1053 232 350 41 0 chr12 61347401 61347498 -59910032 + RMER1B Other Other 17 117 -949 5 1053 925 248 63 17 chr12 61347496 61347734 -59909796 + RMER1A Other Other 160 408 -622 5 1053 1362 211 4 4 chr12 61347738 61347999 -59909531 + RMER1A Other Other 604 864 -166 5 1053 45 45 0 0 chr12 61349079 61349145 -59908385 + AT_rich Low_complexity Low_complexity 1 66 0 5 1053 28 61 0 0 chr12 61349721 61349770 -59907760 + AT_rich Low_complexity Low_complexity 1 49 0 5 1053 387 265 95 21 chr12 61349924 61350113 -59907417 + L1MA9 LINE L1 5681 5883 -429 5 1053 653 381 51 24 chr12 61350150 61350602 -59906928 + MT2A LTR ERVL 1 464 -69 5 1053 354 203 109 51 chr12 61350602 61350758 -59906772 + L1MA9 LINE L1 6127 6291 0 5 1053 405 0 0 0 chr12 61351331 61351376 -59906154 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1053 2592 86 0 3 chr12 61352055 61352393 -59905137 + L1_Mus2 LINE L1 6127 6463 -103 5 1053 2353 184 50 73 chr12 61352855 61352949 -59904581 + RLTR20D LTR ERVK 1 66 -502 5 1053 1092 79 0 0 chr12 61352949 61353088 -59904442 - B1_Mus1 SINE Alu -9 139 1 5 1053 2353 184 50 73 chr12 61353088 61353482 -59904048 + RLTR20D LTR ERVK 67 465 -103 5 1053 219 69 0 0 chr12 61353482 61353511 -59904019 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1053 2353 184 50 73 chr12 61353511 61353566 -59903964 + RLTR20D LTR ERVK 466 531 -37 5 1053 587 176 36 18 chr12 61353558 61353668 -59903862 - B1_Mus1 SINE Alu -25 123 12 5 1053 517 294 70 6 chr12 61354015 61354186 -59903344 - RMER5 LTR ERV1 -285 249 68 5 1053 24 0 0 0 chr12 61354906 61354930 -59902600 + AT_rich Low_complexity Low_complexity 1 24 0 5 1053 1041 72 0 0 chr12 61355664 61355803 -59901727 + (GAA)n Simple_repeat Simple_repeat 3 141 0 5 1053 199 157 19 19 chr12 61357420 61357472 -59900058 + CT-rich Low_complexity Low_complexity 3 54 0 5 1053 453 302 60 57 chr12 61357556 61357925 -59899605 - L1M2 LINE L1 -4318 2531 2162 5 1053 599 367 36 24 chr12 61358019 61358430 -59899100 - Lx8 LINE L1 -214 7259 6844 5 1053 7666 14 1 0 chr12 61358429 61359326 -59898204 - L1_Mm LINE L1 -1504 4379 3482 5 1053 5080 44 0 0 chr12 61359334 61359945 -59897585 + L1Md_T LINE L1 5971 6581 -1 5 1053 1047 284 43 30 chr12 61360031 61360404 -59897126 - Lx8 LINE L1 -868 6605 6228 5 1053 525 32 0 0 chr12 61360855 61360918 -59896612 + (TTTTA)n Simple_repeat Simple_repeat 2 64 0 5 1053 518 316 0 68 chr12 61360918 61361064 -59896466 - ID_B1 SINE B4 -11 213 78 5 1053 4580 49 0 22 chr12 61361237 61361827 -59895703 + L1Md_F2 LINE L1 6005 6581 -1 5 1053 21 36 0 0 chr12 61361871 61361899 -59895631 + AT_rich Low_complexity Low_complexity 1 28 0 5 1053 1419 226 29 57 chr12 61361958 61362343 -59895187 + ORR1D1 LTR MaLR 1 374 0 5 1053 793 331 46 24 chr12 61362421 61362790 -59894740 + MTE2b LTR MaLR 1 377 -2 5 1053 704 333 49 51 chr12 61364823 61365317 -59892213 + ERVL-E-int LTR ERVL 2213 2705 -2962 5 1053 2720 116 130 13 chr12 61365539 61366002 -59891528 + Lx2 LINE L1 6481 6997 0 5 1053 3202 34 0 0 chr12 61366207 61366590 -59890940 + L1Md_T LINE L1 6200 6582 0 5 1053 567 294 34 50 chr12 61367103 61367282 -59890248 + B3A SINE B2 22 197 -1 5 1053 354 344 27 21 chr12 61368041 61368228 -59889302 + MER58B DNA MER1_type 118 305 -36 5 1053 652 246 128 6 chr12 61368246 61368535 -59888995 - Lx4B LINE L1 -3 7055 6646 5 1053 381 22 0 0 chr12 61368991 61369037 -59888493 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1053 228 67 0 0 chr12 61370217 61370247 -59887283 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1053 470 200 16 16 chr12 61370312 61370439 -59887091 - Lx9 LINE L1 -1 7643 7517 5 1053 402 21 0 0 chr12 61370907 61370954 -59886576 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 5 1053 434 224 0 7 chr12 61370971 61371119 -59886411 + CT-rich Low_complexity Low_complexity 2 148 0 5 1053 1456 181 111 47 chr12 61372564 61372906 -59884624 - RLTR24 LTR ERV1 0 529 166 5 1053 786 227 57 44 chr12 61372941 61373277 -59884253 - LTRIS5 LTR ERV1 0 512 178 5 1053 35374 43 6 3 chr12 61373482 61378740 -59878790 + L1Md_T LINE L1 220 5589 -297 5 1053 8381 35 0 0 chr12 61378740 61379733 -59877797 + L1Md_T LINE L1 5590 6582 -3 5 1053 1581 67 5 0 chr12 61380191 61380401 -59877129 + L1Md_T LINE L1 6372 6582 0 5 1053 751 73 28 0 chr12 61380430 61380539 -59876991 - RLTR24 LTR ERV1 -397 132 21 5 1053 180 0 0 0 chr12 61380893 61380913 -59876617 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1053 324 333 78 0 chr12 61383702 61383804 -59873726 + B1F2 SINE Alu 17 126 -23 5 1053 300 333 54 9 chr12 61383704 61383816 -59873714 + ID_B1 SINE B4 100 216 -8 5 1053 339 276 58 33 chr12 61383843 61383963 -59873567 + ID_B1 SINE B4 97 219 -5 5 1053 249 33 0 0 chr12 61384057 61384087 -59873443 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1053 342 0 0 0 chr12 61385312 61385350 -59872180 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1053 7300 90 9 23 chr12 61385574 61385821 -59871709 - L1_Mus3 LINE L1 -6 6632 6384 5 1053 189 0 0 0 chr12 61385821 61385842 -59871688 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1053 9638 119 7 27 chr12 61385842 61387984 -59869546 - L1_Mus3 LINE L1 -255 6383 4296 5 1053 299 299 123 29 chr12 61388380 61388518 -59869012 + MER5A DNA MER1_type 32 182 -7 5 1053 185 354 12 12 chr12 61388619 61388702 -59868828 + MER5B DNA MER1_type 89 171 -7 5 1053 376 352 104 32 chr12 61388788 61389193 -59868337 + L1ME3B LINE L1 5566 5999 -241 5 1053 660 36 0 0 chr12 61389496 61389579 -59867951 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1053 356 0 0 22 chr12 61389579 61389623 -59867907 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1053 371 294 42 0 chr12 61389624 61389767 -59867763 - RMER15 LTR ERVL -35 540 392 5 1053 180 0 0 0 chr12 61391579 61391599 -59865931 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1053 1174 289 63 5 chr12 61391800 61392179 -59865351 - FordPrefect DNA Tip100 -204 1479 1079 5 1053 228 303 60 15 chr12 61393461 61393595 -59863935 - B1F2 SINE Alu -7 142 3 5 1053 207 0 0 0 chr12 61394523 61394546 -59862984 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1053 603 207 43 0 chr12 61394926 61395066 -59862464 + URR1B DNA MER1_type 78 223 -2 5 1053 242 365 94 0 chr12 61395156 61395252 -59862278 - PB1D10 SINE Alu -12 105 1 5 1053 1638 85 21 8 chr12 61395288 61395526 -59862004 + L1Md_F2 LINE L1 6342 6582 0 5 1053 359 310 101 34 chr12 61395556 61395793 -59861737 - L1MD3 LINE L1 -93 7902 7650 5 1053 563 251 0 6 chr12 61396024 61396200 -59861330 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 5 1053 606 223 0 0 chr12 61396240 61396397 -59861133 + (TG)n Simple_repeat Simple_repeat 2 158 0 5 1053 448 348 24 7 chr12 61396475 61396764 -59860766 - L1MD3 LINE L1 -930 7065 6772 5 1053 213 139 0 0 chr12 61396815 61396858 -59860672 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 5 1053 396 323 44 0 chr12 61397140 61397298 -59860232 - MER5B DNA MER1_type -4 174 10 5 1053 513 321 104 25 chr12 61397572 61397773 -59859757 - B4 SINE B4 -10 282 66 5 1053 1525 177 100 0 chr12 61398429 61398728 -59858802 + ORR1A4 LTR MaLR 1 329 0 5 1053 892 325 60 6 chr12 61398903 61399234 -59858296 + MTEa LTR MaLR 1 349 -30 5 1053 704 289 17 0 chr12 61399911 61400084 -59857446 - ID_B1 SINE B4 -47 177 2 5 1053 1106 256 55 19 chr12 61400116 61400482 -59857048 + MTEb LTR MaLR 1 379 0 5 1053 5663 124 5 2 chr12 61400553 61401431 -59856099 - L1_Mus3 LINE L1 0 6638 5759 5 1053 3784 123 31 52 chr12 61401444 61401856 -59855674 - RMER17A LTR ERVK -17 734 323 5 1053 1087 45 39 0 chr12 61401856 61402010 -59855520 + (GGAGA)n Simple_repeat Simple_repeat 2 161 0 5 1053 3784 123 31 52 chr12 61402010 61402334 -59855196 - RMER17A LTR ERVK -429 322 13 5 1053 13699 144 5 2 chr12 61402358 61404628 -59852902 - L1_Mm LINE L1 -115 5768 3493 5 1053 11567 122 37 6 chr12 61404624 61407188 -59850342 - L1VL2 LINE L1 -833 2782 135 5 1053 285 29 0 0 chr12 61407234 61407268 -59850262 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1053 3354 111 2 45 chr12 61408462 61408993 -59848537 - L1Md_F2 LINE L1 -2 6580 6073 5 1053 2149 142 12 0 chr12 61409472 61409795 -59847735 - ORR1A2 LTR MaLR 0 327 1 5 1053 1798 313 58 13 chr12 61410230 61410932 -59846598 - Lx8 LINE L1 -217 7256 6523 5 1053 21 71 0 0 chr12 61411060 61411102 -59846428 + AT_rich Low_complexity Low_complexity 1 42 0 5 1053 363 333 141 14 chr12 61412007 61412220 -59845310 + MLT2C1 LTR ERVL 1 240 -157 5 1053 32823 76 5 14 chr12 61412595 61417793 -59839737 + L1Md_F3 LINE L1 441 5586 -297 5 1053 7636 61 3 0 chr12 61417794 61418774 -59838756 + L1Md_F3 LINE L1 5588 6570 -14 5 1053 557 94 0 12 chr12 61419192 61419278 -59838252 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 5 1053 603 0 0 0 chr12 61419278 61419345 -59838185 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 5 1053 285 314 67 59 chr12 61420084 61420338 -59837192 + MER89-int LTR ERV1 1111 1366 -5435 5 1053 31 58 0 0 chr12 61420667 61420719 -59836811 + AT_rich Low_complexity Low_complexity 1 52 0 5 1053 261 0 0 0 chr12 61420727 61420756 -59836774 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1053 184 315 82 52 chr12 61420761 61420858 -59836672 + L4 LINE RTE 1409 1508 -521 5 1053 225 410 24 77 chr12 61420952 61421198 -59836332 - MLT1H LTR MaLR -199 350 118 5 1053 297 0 0 0 chr12 61421546 61421579 -59835951 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1053 21 36 0 0 chr12 61421631 61421659 -59835871 + AT_rich Low_complexity Low_complexity 1 28 0 5 1053 2607 214 67 17 chr12 61422011 61422605 -59834925 - RMER20B LTR ERVK 0 627 4 5 1053 630 223 6 17 chr12 61422758 61422936 -59834594 + L1MC3 LINE L1 5297 5472 -2313 5 1053 373 306 97 39 chr12 61422956 61423214 -59834316 + L1MC3 LINE L1 5555 5827 -1958 5 1053 694 313 35 88 chr12 61423324 61423608 -59833922 + B4A SINE B4 1 269 -23 5 1053 513 303 123 10 chr12 61423729 61424029 -59833501 + L1MC3 LINE L1 6285 6618 -1167 5 1053 1489 107 8 62 chr12 61424291 61424550 -59832980 + L1_Mus3 LINE L1 6394 6638 0 5 1053 233 338 28 7 chr12 61424647 61424790 -59832740 + L1MC3 LINE L1 6717 6862 -923 5 1053 225 366 58 13 chr12 61425947 61426102 -59831428 + L1MC3 LINE L1 7203 7364 -421 5 1053 958 211 40 32 chr12 61426290 61426611 -59830919 + RMER15 LTR ERVL 1 363 -212 6 1053 29 70 0 0 chr12 61426836 61426893 -59830637 + AT_rich Low_complexity Low_complexity 1 57 0 6 1053 7051 126 19 3 chr12 61427092 61428220 -59829310 + L1_Mur2 LINE L1 4047 5193 -684 6 1053 546 161 0 18 chr12 61428250 61428364 -59829166 - Lx9 LINE L1 -6 7638 7527 6 1053 3687 71 50 44 chr12 61428354 61428920 -59828610 - L1Md_F2 LINE L1 0 6582 6032 6 1053 194 0 39 0 chr12 61429765 61429791 -59827739 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1053 1180 55 0 7 chr12 61429795 61429942 -59827588 - B1_Mm SINE Alu -1 146 1 6 1053 23 0 0 0 chr12 61430166 61430189 -59827341 + AT_rich Low_complexity Low_complexity 1 23 0 6 1053 313 278 24 8 chr12 61430571 61430698 -59826832 - L1M2 LINE L1 -3117 3026 2898 6 1053 23 33 0 0 chr12 61430707 61430737 -59826793 + AT_rich Low_complexity Low_complexity 1 30 0 6 1053 1318 115 10 0 chr12 61430749 61430941 -59826589 - B2_Mm2 SINE B2 0 195 2 6 1053 350 255 116 11 chr12 61430983 61431173 -59826357 - L1M2 LINE L1 -3797 2346 2137 6 1053 24 32 0 0 chr12 61431515 61431546 -59825984 + AT_rich Low_complexity Low_complexity 1 31 0 6 1053 22 35 0 0 chr12 61431764 61431793 -59825737 + AT_rich Low_complexity Low_complexity 1 29 0 6 1053 425 0 55 0 chr12 61431899 61431954 -59825576 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 6 1053 579 291 50 33 chr12 61432162 61432343 -59825187 - B4A SINE B4 -66 226 43 6 1053 2078 188 88 49 chr12 61433501 61434032 -59823498 - RMER6C LTR ERVK 0 690 139 6 1053 1404 201 0 47 chr12 61434032 61434309 -59823221 - RMER6-int LTR ERVK -37 3140 2877 6 1053 26 30 0 0 chr12 61434424 61434457 -59823073 + AT_rich Low_complexity Low_complexity 1 33 0 6 1053 27 0 0 0 chr12 61434641 61434668 -59822862 + AT_rich Low_complexity Low_complexity 1 27 0 6 1053 229 365 0 0 chr12 61435115 61435189 -59822341 + ID4 SINE ID 2 75 -8 6 1053 1193 101 6 0 chr12 61435194 61435373 -59822157 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1053 690 140 0 0 chr12 61435373 61435487 -59822043 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 6 1053 7199 108 9 3 chr12 61435680 61436855 -59820675 - L1_Mus3 LINE L1 -27 6611 5423 6 1053 3110 56 13 2 chr12 61437126 61437522 -59820008 - MTB LTR MaLR 0 400 1 6 1053 1133 224 109 66 chr12 61437659 61438128 -59819402 + Lx9 LINE L1 3301 3789 -2058 6 1053 2074 231 73 18 chr12 61438185 61438691 -59818839 + RMER5 LTR ERV1 1 534 0 6 1053 791 238 29 46 chr12 61438697 61438935 -59818595 + Lx9 LINE L1 3809 4042 -1805 6 1053 3751 236 62 65 chr12 61438939 61441407 -59816123 + Lx9 LINE L1 4782 7384 -260 6 1053 390 21 0 0 chr12 61441408 61441455 -59816075 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1053 459 194 34 14 chr12 61441455 61441601 -59815929 + Lx9 LINE L1 7488 7636 -8 6 1053 219 164 32 16 chr12 61442333 61442395 -59815135 + CT-rich Low_complexity Low_complexity 2 64 0 6 1053 1219 265 43 8 chr12 61442713 61443109 -59814421 - RCHARR1 DNA MER1_type 0 974 565 6 1053 343 277 113 52 chr12 61443166 61443379 -59814151 + Lx8 LINE L1 6982 7207 -266 6 1053 1316 166 265 4 chr12 61443381 61443764 -59813766 + MERVL_2A-int LTR ERVL 5001 5488 -273 6 1053 621 90 0 0 chr12 61443764 61443853 -59813677 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 1053 1316 212 222 1 chr12 61443853 61444080 -59813450 + MERVL_2A-int LTR ERVL 5489 5761 0 6 1053 488 246 115 178 chr12 61444080 61444238 -59813292 + MT2A LTR ERVL 1 143 -390 6 1053 414 0 0 0 chr12 61444238 61444284 -59813246 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1053 488 229 464 131 chr12 61444284 61444528 -59813002 + MT2A LTR ERVL 144 459 -74 6 1053 216 0 0 0 chr12 61444528 61444552 -59812978 + (TCCA)n Simple_repeat Simple_repeat 1 24 0 6 1053 357 109 0 0 chr12 61444552 61444607 -59812923 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 1053 455 192 236 24 chr12 61444607 61444653 -59812877 + MT2A LTR ERVL 460 532 -1 6 1053 1138 325 58 36 chr12 61444762 61445343 -59812187 - RCHARR1 DNA MER1_type -355 619 26 6 1053 415 276 189 7 chr12 61445746 61445899 -59811631 - MTD LTR MaLR -16 403 223 6 1053 6646 64 0 23 chr12 61445907 61446786 -59810744 - L1Md_F2 LINE L1 -11 6571 5713 6 1053 468 355 2 20 chr12 61446786 61446940 -59810590 - MTD LTR MaLR -204 215 57 6 1053 948 258 202 48 chr12 61447492 61447968 -59809562 - RMER15 LTR ERVL 0 575 27 6 1053 598 337 205 0 chr12 61448202 61448543 -59808987 + MLT1H LTR MaLR 106 516 -33 6 1053 702 94 0 8 chr12 61448608 61448726 -59808804 - L1_Mus4 LINE L1 -4 6632 6516 6 1053 31 0 0 0 chr12 61448745 61448776 -59808754 + AT_rich Low_complexity Low_complexity 1 31 0 6 1053 6500 65 21 0 chr12 61449094 61449450 -59808080 - L1Md_F2 LINE L1 -415 6167 5805 6 1053 576 0 0 0 chr12 61449450 61449514 -59808016 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1053 1113 70 0 0 chr12 61449514 61449657 -59807873 - B1_Mm SINE Alu -3 144 2 6 1053 6500 87 6 0 chr12 61449657 61450452 -59807078 - L1Md_F2 LINE L1 -79 5804 5005 6 1053 3096 105 9 0 chr12 61450453 61450900 -59806630 + L1_Mus1 LINE L1 6116 6566 -1 6 1053 22 0 0 0 chr12 61450900 61450922 -59806608 + AT_rich Low_complexity Low_complexity 1 22 0 6 1053 377 70 18 0 chr12 61451473 61451530 -59806000 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 6 1053 1175 97 6 0 chr12 61451995 61452171 -59805359 + (GAA)n Simple_repeat Simple_repeat 3 179 0 6 1053 396 352 8 0 chr12 61452480 61452608 -59804922 + ID_B1 SINE B4 87 215 -9 6 1053 24 32 0 0 chr12 61453693 61453724 -59803806 + AT_rich Low_complexity Low_complexity 1 31 0 6 1053 1598 337 113 37 chr12 61453864 61455563 -59801967 - Lx8 LINE L1 -134 7339 5527 6 1053 804 256 123 29 chr12 61457292 61457602 -59799928 - RMER5 LTR ERV1 0 534 196 6 1053 861 265 22 9 chr12 61457810 61458035 -59799495 - Lx6 LINE L1 -136 7324 7097 6 1053 23 33 0 0 chr12 61459140 61459170 -59798360 + AT_rich Low_complexity Low_complexity 1 30 0 6 1053 403 325 90 65 chr12 61459377 61459578 -59797952 - B3 SINE B2 -6 210 5 6 1053 7100 71 0 0 chr12 61459587 61460505 -59797025 - L1_Mm LINE L1 -380 5503 4586 6 1053 4464 79 3 2 chr12 61460499 61461117 -59796413 - L1_Mm LINE L1 -3221 2662 2044 6 1053 3706 38 7 0 chr12 61461104 61461632 -59795898 + L1Md_F2 LINE L1 5502 6032 -550 6 1053 2953 41 7 81 chr12 61461632 61462053 -59795477 - RLTR10 LTR ERVK 0 390 1 6 1053 17146 28 1 4 chr12 61462055 61464060 -59793470 - RLTR10-int LTR ERVK -3 1984 9 6 1053 2988 36 7 81 chr12 61464061 61464482 -59793048 - RLTR10 LTR ERVK 0 390 1 6 1053 3778 95 11 7 chr12 61464482 61465024 -59792506 + L1Md_F2 LINE L1 6027 6570 -12 6 1053 604 160 16 16 chr12 61465032 61465153 -59792377 + URR1B DNA MER1_type 78 198 -27 6 1053 653 271 98 16 chr12 61465215 61465530 -59792000 - L1MA6 LINE L1 -359 5941 5601 6 1053 260 233 20 91 chr12 61465623 61465722 -59791808 - L1MA6 LINE L1 -703 5609 5518 6 1053 320 254 53 53 chr12 61465742 61465792 -59791738 - L1MA6 LINE L1 -865 5447 5391 6 1053 387 41 0 0 chr12 61465792 61465841 -59791689 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1053 466 268 91 64 chr12 61465841 61466260 -59791270 - L1MA6 LINE L1 -757 5386 4957 6 1053 582 294 0 0 chr12 61467145 61467288 -59790242 + Lx9 LINE L1 7168 7310 -334 6 1053 924 131 0 0 chr12 61467288 61467463 -59790067 + (CA)n Simple_repeat Simple_repeat 2 176 0 6 1053 634 209 11 11 chr12 61467465 61467639 -59789891 + (CATA)n Simple_repeat Simple_repeat 3 176 0 6 1053 999 161 0 0 chr12 61467640 61467866 -59789664 + (CA)n Simple_repeat Simple_repeat 1 226 0 6 1053 610 196 80 0 chr12 61467868 61468006 -59789524 + Lx9 LINE L1 7317 7465 -179 6 1053 498 33 0 0 chr12 61468040 61468100 -59789430 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1053 492 279 93 16 chr12 61468284 61468466 -59789064 - Lx8 LINE L1 -270 7203 7008 6 1053 1038 257 47 9 chr12 61468473 61468830 -59788700 - MTD LTR MaLR -5 414 9 6 1053 322 248 142 25 chr12 61468839 61468959 -59788571 - Lx8 LINE L1 -471 7002 6869 6 1053 1305 295 57 5 chr12 61470429 61470834 -59786696 + Lx9 LINE L1 6342 6767 -877 6 1053 647 279 8 63 chr12 61470832 61471120 -59786410 + Lx9 LINE L1 6672 7047 -597 6 1053 1852 196 0 0 chr12 61471132 61471453 -59786077 + ORR1A4 LTR MaLR 1 321 -8 6 131 8324 158 78 125 chr12 61471457 61473245 -59784285 + ORR1A4-int LTR MaLR 1 1764 -199 6 1054 381 43 0 0 chr12 61473245 61473292 -59784238 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 6 1054 8324 158 78 125 chr12 61473292 61473559 -59783971 + ORR1A4-int LTR MaLR 1765 1960 -3 6 1054 1953 161 9 12 chr12 61473562 61473889 -59783641 + ORR1A4 LTR MaLR 1 326 -3 6 1054 731 330 116 4 chr12 61473889 61474355 -59783175 + Lx9 LINE L1 7104 7621 -23 6 1054 490 309 33 13 chr12 61475701 61475852 -59781678 + ORR1D2 LTR MaLR 31 184 -186 6 1054 1061 229 13 104 chr12 61475897 61476204 -59781326 - RMER19C LTR ERVK -332 279 1 6 1054 1254 102 0 0 chr12 61476729 61477045 -59780485 + (CA)n Simple_repeat Simple_repeat 1 316 0 6 1054 594 0 0 0 chr12 61477091 61477157 -59780373 + (TC)n Simple_repeat Simple_repeat 2 67 0 6 1054 297 0 0 0 chr12 61477157 61477189 -59780341 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1054 317 230 11 84 chr12 61477214 61477309 -59780221 - PB1 SINE Alu -9 118 31 6 1054 2272 230 174 17 chr12 61478170 61478830 -59778700 - Lx5 LINE L1 -3 7047 6284 6 1054 567 195 18 0 chr12 61478830 61478943 -59778587 - L1_Mur2 LINE L1 -413 5464 5350 6 1054 5115 215 33 18 chr12 61478946 61480113 -59777417 - Lx2B LINE L1 -1 6999 5816 6 1054 11202 167 130 7 chr12 61480113 61481897 -59775633 - L1_Mur2 LINE L1 -587 5290 3236 6 1054 441 0 0 0 chr12 61481897 61481946 -59775584 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1054 11202 167 130 7 chr12 61481946 61482594 -59774936 - L1_Mur2 LINE L1 -2642 3235 2560 6 1054 201 171 0 0 chr12 61482871 61482906 -59774624 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 1054 295 326 10 0 chr12 61485762 61485860 -59771670 - PB1D10 SINE Alu -18 99 1 6 1054 29625 129 11 19 chr12 61485980 61487299 -59770231 + L1Md_F2 LINE L1 496 1781 -4102 6 1054 4225 21 0 0 chr12 61487299 61487781 -59769749 - LTRIS_Mm LTR ERV1 0 482 1 6 1054 29625 77 18 4 chr12 61487781 61491367 -59766163 + L1Md_F2 LINE L1 1782 5425 -458 6 1054 7461 77 0 4 chr12 61491398 61492451 -59765079 + L1Md_F2 LINE L1 5587 6582 0 6 1054 1419 181 92 3 chr12 61492975 61493269 -59764261 - IAPEY3_LTR LTR ERVK -12 320 1 6 1054 324 0 0 0 chr12 61493329 61493365 -59764165 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1054 355 370 25 0 chr12 61493765 61493884 -59763646 - B4 SINE B4 -2 290 169 6 1054 26 0 0 0 chr12 61494131 61494157 -59763373 + AT_rich Low_complexity Low_complexity 1 26 0 6 1054 1729 295 96 112 chr12 61494174 61494689 -59762841 + Lx9 LINE L1 6401 6896 -748 6 1054 1321 81 49 0 chr12 61494689 61494874 -59762656 - B2_Mm2 SINE B2 0 195 2 6 1054 1729 295 96 112 chr12 61494874 61495583 -59761947 + Lx9 LINE L1 6897 7606 -38 6 1054 23 0 0 0 chr12 61495598 61495621 -59761909 + AT_rich Low_complexity Low_complexity 1 23 0 6 1054 228 309 32 0 chr12 61495622 61495716 -59761814 - L1MC LINE L1 -627 5717 5621 6 1054 3637 72 19 0 chr12 61495731 61496205 -59761325 - L1_Mus2 LINE L1 -2 6564 6082 6 1054 1231 221 120 44 chr12 61496824 61497015 -59760515 - RMER12B LTR ERVK 0 1404 1200 6 1054 288 0 0 0 chr12 61497015 61497047 -59760483 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1054 537 64 0 0 chr12 61497047 61497124 -59760406 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 1054 1231 221 120 44 chr12 61497124 61497274 -59760256 - RMER12B LTR ERVK -205 1199 1037 6 1054 1246 52 23 0 chr12 61497274 61497448 -59760082 - L1Md_F2 LINE L1 0 6582 6405 6 1054 1231 221 120 44 chr12 61497448 61497586 -59759944 - RMER12B LTR ERVK -368 1036 888 6 1054 1107 88 0 13 chr12 61497600 61497749 -59759781 - B1_Mus1 SINE Alu 0 148 2 6 1054 12360 60 3 1 chr12 61497751 61499338 -59758192 - L1Md_F LINE L1 -14 5869 4280 7 1054 4355 102 48 0 chr12 61499338 61499967 -59757563 - L1Md_F LINE L1 -5568 1048 390 7 1054 498 33 0 0 chr12 61500511 61500571 -59756959 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1054 261 0 0 0 chr12 61500572 61500601 -59756929 + (GGA)n Simple_repeat Simple_repeat 2 30 0 2 1054 185 86 0 54 chr12 61501417 61501436 -59756094 + (CAAAA)n Simple_repeat Simple_repeat 3 21 0 3 1054 2282 154 147 114 chr12 61501436 61502104 -59755426 + RMER6C LTR ERVK 1 690 0 4 1054 185 86 0 54 chr12 61502104 61502121 -59755409 + (CAAAA)n Simple_repeat Simple_repeat 2 17 0 5 1054 259 295 0 13 chr12 61502177 61502256 -59755274 + (TATG)n Simple_repeat Simple_repeat 2 79 0 6 1054 301 316 24 73 chr12 61502464 61502587 -59754943 + PB1D10 SINE Alu 1 117 0 7 1054 2982 317 50 15 chr12 61502741 61503864 -59753666 - Lx8 LINE L1 -2 7471 6310 8 1054 3035 202 62 6 chr12 61503864 61504579 -59752951 + Lx5 LINE L1 2204 2958 -2919 9 1054 11268 27 0 0 chr12 61504579 61505909 -59751621 + L1Md_T LINE L1 4256 5585 -298 1 1054 8284 41 0 1 chr12 61505910 61506907 -59750623 + L1Md_T LINE L1 5587 6582 0 1 1054 10939 230 54 48 chr12 61506908 61510747 -59746783 + Lx5 LINE L1 2992 6820 -230 9 1054 354 61 0 0 chr12 61510747 61510796 -59746734 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1054 3246 283 43 128 chr12 61510796 61511016 -59746514 + Lx5 LINE L1 6821 7030 -20 9 1054 430 83 14 14 chr12 61512029 61512102 -59745428 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1054 342 0 0 0 chr12 61512102 61512139 -59745391 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1054 198 358 100 29 chr12 61512456 61512666 -59744864 - L2a LINE L2 -278 3148 2924 1 1054 721 351 27 47 chr12 61513897 61514154 -59743376 + B4 SINE B4 35 286 -6 1 1054 468 51 0 0 chr12 61514496 61514555 -59742975 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1054 735 129 0 39 chr12 61515233 61515386 -59742144 - L1_Mus4 LINE L1 -2 6634 6488 1 1054 611 354 57 59 chr12 61515743 61516115 -59741415 - MLT1A LTR MaLR -3 371 1 1 1054 232 197 71 57 chr12 61516124 61516264 -59741266 - RMER17D LTR ERVK -503 386 245 1 1054 1398 17 0 17 chr12 61516448 61516628 -59740902 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 2 1054 306 0 0 0 chr12 61516636 61516670 -59740860 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1054 899 127 0 22 chr12 61516672 61516809 -59740721 - B1_Mus2 SINE Alu -13 134 1 2 1054 660 285 71 36 chr12 61517077 61517395 -59740135 + LTRIS4 LTR ERV1 233 605 0 2 1054 2965 195 48 75 chr12 61517446 61518243 -59739287 - RLTR40 LTR ERVK 0 817 43 2 1054 1737 152 44 156 chr12 61518336 61518698 -59738832 - RLTR23 LTR ERV1 -27 403 100 2 1054 198 0 0 0 chr12 61518698 61518720 -59738810 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1054 1737 152 44 156 chr12 61518720 61518811 -59738719 - RLTR23 LTR ERV1 -331 99 1 2 1054 207 146 0 40 chr12 61518841 61518891 -59738639 + A-rich Low_complexity Low_complexity 2 49 0 2 1054 5149 98 4 9 chr12 61519332 61520272 -59737258 - Lx3_Mus LINE L1 -911 6098 5168 2 1054 3423 115 24 25 chr12 61520274 61520871 -59736659 + Lx3_Mus LINE L1 6028 6623 -386 2 1054 459 261 0 0 chr12 61520870 61520958 -59736572 - Lx4A LINE L1 -668 6382 6295 2 1054 943 104 21 0 chr12 61521409 61521553 -59735977 - B1_Mus1 SINE Alu 0 148 2 3 1054 211 164 36 48 chr12 61521598 61521681 -59735849 + T-rich Low_complexity Low_complexity 2 83 0 3 1054 234 200 33 16 chr12 61522018 61522079 -59735451 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1054 28 0 0 0 chr12 61522079 61522107 -59735423 + AT_rich Low_complexity Low_complexity 1 28 0 3 1054 247 190 0 65 chr12 61522107 61522169 -59735361 - Lx4A LINE L1 0 7058 7001 3 1054 636 140 9 9 chr12 61522156 61522271 -59735259 - Lx3_Mus LINE L1 -385 6624 6510 3 1054 11412 140 35 4 chr12 61522270 61524330 -59733200 - Lx4A LINE L1 -1098 5960 3832 2 1054 4104 137 137 15 chr12 61525149 61526820 -59730710 - Lx4A LINE L1 -4124 1753 579 2 1054 1028 291 24 77 chr12 61526919 61527375 -59730155 + MTC LTR MaLR 1 417 -2 3 1054 29 28 0 0 chr12 61527390 61527426 -59730104 + AT_rich Low_complexity Low_complexity 1 36 0 3 1054 298 295 13 13 chr12 61527459 61527538 -59729992 - RSINE1 SINE B4 -82 83 5 3 1054 4147 145 48 21 chr12 61528592 61528859 -59728671 - L1_Mur2 LINE L1 -876 5001 4731 3 1054 258 32 0 0 chr12 61528859 61528890 -59728640 + (TGG)n Simple_repeat Simple_repeat 1 31 0 4 1054 4147 145 48 21 chr12 61528890 61528988 -59728542 - L1_Mur2 LINE L1 -1147 4730 4627 3 1054 246 62 0 0 chr12 61528988 61529020 -59728510 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1054 4147 145 48 21 chr12 61529020 61529428 -59728102 - L1_Mur2 LINE L1 -1251 4626 4206 3 1054 1747 168 19 56 chr12 61529424 61529834 -59727696 - L1_Mur2 LINE L1 -1884 3993 3599 3 1054 3699 197 88 1 chr12 61529827 61530569 -59726961 + Lx2 LINE L1 6192 6997 0 4 1054 21 36 0 0 chr12 61531463 61531491 -59726039 + AT_rich Low_complexity Low_complexity 1 28 0 4 1054 204 125 0 0 chr12 61531505 61531537 -59725993 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1054 484 344 56 86 chr12 61531542 61531809 -59725721 - B4A SINE B4 0 292 34 4 1054 711 174 20 12 chr12 61532767 61533369 -59724161 + (TG)n Simple_repeat Simple_repeat 1 607 0 4 1054 551 299 55 9 chr12 61533494 61533713 -59723817 + Charlie10b DNA MER1_type 7 235 -7 4 1054 1996 219 32 111 chr12 61533945 61534609 -59722921 - RMER19C LTR ERVK 0 611 1 4 1054 686 301 15 4 chr12 61535321 61535525 -59722005 + B3A SINE B2 1 200 -16 4 1054 186 43 0 0 chr12 61535533 61535556 -59721974 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1054 21 0 0 0 chr12 61535603 61535624 -59721906 + AT_rich Low_complexity Low_complexity 1 21 0 5 1054 2504 237 38 16 chr12 61535841 61536447 -59721083 + RMER20B LTR ERVK 6 624 -3 5 1054 247 244 121 8 chr12 61536632 61536756 -59720774 - Lx9 LINE L1 0 7644 7507 5 1054 252 0 0 0 chr12 61536757 61536785 -59720745 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1054 286 380 67 71 chr12 61536953 61537177 -59720353 - B4A SINE B4 -54 238 16 5 1054 465 50 0 0 chr12 61537183 61537243 -59720287 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1054 550 308 7 20 chr12 61537935 61538081 -59719449 - B1_Mur1 SINE Alu -3 146 3 5 1054 774 223 0 0 chr12 61538087 61538223 -59719307 + B1_Mur4 SINE Alu 2 137 -13 5 1054 258 56 0 0 chr12 61538223 61538259 -59719271 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1054 774 223 0 0 chr12 61538259 61538270 -59719260 + B1_Mur4 SINE Alu 138 148 -2 5 1054 401 0 20 0 chr12 61538272 61538321 -59719209 + (CAA)n Simple_repeat Simple_repeat 2 51 0 6 1054 438 319 60 16 chr12 61538672 61538857 -59718673 - RMER30 DNA MER1_type 0 202 10 6 1054 1415 197 3 21 chr12 61538968 61539253 -59718277 - L1_Mur2 LINE L1 -180 5697 5418 6 1054 1981 163 80 19 chr12 61539319 61539902 -59717628 - RLTR17 LTR ERVK -73 619 1 6 1054 423 175 37 24 chr12 61539927 61540009 -59717521 + RLTR31_Mm LTR ERVK 479 561 0 6 1054 2253 221 98 11 chr12 61540015 61540547 -59716983 + Lx4B LINE L1 6460 7037 -21 6 1054 326 42 0 20 chr12 61540550 61540599 -59716931 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 6 1054 849 250 47 25 chr12 61541744 61542048 -59715482 + Lx8 LINE L1 5523 5823 -348 6 1054 1056 346 62 54 chr12 61542569 61543483 -59714047 + Lx8 LINE L1 5805 6726 -747 6 1054 1256 168 13 0 chr12 61543624 61543850 -59713680 + Lx2 LINE L1 6769 6997 0 6 1054 38415 7 0 0 chr12 61543861 61549440 -59708090 + L1Md_A LINE L1 7 5586 -297 6 1054 9004 3 0 0 chr12 61549440 61550436 -59707094 + L1Md_A LINE L1 5587 6582 0 6 1054 207 0 0 0 chr12 61550480 61550503 -59707027 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1054 261 122 0 0 chr12 61550510 61550551 -59706979 - Lx LINE L1 -565 6089 6049 7 1054 3183 164 41 5 chr12 61550551 61551110 -59706420 + Lx2 LINE L1 6419 6997 0 7 1054 247 385 15 0 chr12 61551211 61551406 -59706124 - L1MDa LINE L1 -590 6160 5963 7 1054 228 67 0 0 chr12 61551452 61551482 -59706048 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 7 1054 385 338 100 12 chr12 61551617 61551857 -59705673 - L1MDa LINE L1 -822 5715 5455 7 1054 286 285 79 43 chr12 61551935 61552188 -59705342 - L1MDa LINE L1 -1213 5324 5063 7 1054 2855 181 22 3 chr12 61552231 61552856 -59704674 - L1_Mur1 LINE L1 -3782 2104 1468 7 1054 275 276 74 51 chr12 61553476 61553652 -59703878 - L1MDa LINE L1 -4599 2034 1855 7 1054 2289 43 11 0 chr12 61554101 61554380 -59703150 + L1Md_F2 LINE L1 5305 5586 -297 7 1054 7284 49 15 89 chr12 61554380 61555456 -59702074 + L1Md_F2 LINE L1 5587 6582 0 7 1054 264 304 123 30 chr12 61555663 61556036 -59701494 + L1MC3 LINE L1 5751 6158 -1627 7 1054 439 319 153 27 chr12 61556048 61556309 -59701221 + L1MC3 LINE L1 6288 6581 -1204 7 1054 1057 77 35 7 chr12 61556421 61556565 -59700965 + B1_Mus1 SINE Alu 1 148 0 7 1054 189 0 0 0 chr12 61556565 61556586 -59700944 + (GAAAA)n Simple_repeat Simple_repeat 4 24 0 7 1054 1670 166 13 22 chr12 61556841 61557155 -59700375 + RLTR22_Mur LTR ERVK 1 311 -1537 8 1054 468 48 0 0 chr12 61557157 61557219 -59700311 - L1Md_F2 LINE L1 -849 5034 4973 8 1054 4221 74 21 2 chr12 61557218 61557783 -59699747 + L1Md_F2 LINE L1 5010 5585 -298 8 1054 6966 95 2 16 chr12 61557784 61558777 -59698753 + L1Md_F2 LINE L1 5587 6565 -17 8 1054 243 0 0 0 chr12 61558780 61558807 -59698723 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1054 2675 160 14 23 chr12 61558807 61559320 -59698210 + RLTR22_Mur LTR ERVK 301 808 -1040 8 1054 33 25 0 0 chr12 61559333 61559373 -59698157 + AT_rich Low_complexity Low_complexity 1 40 0 8 1054 4748 76 35 3 chr12 61559992 61560650 -59696880 - L1Md_F2 LINE L1 0 6582 5911 8 1054 4694 87 6 0 chr12 61560651 61561285 -59696245 - L1_Mus1 LINE L1 -1 6566 5929 8 1054 4107 80 7 0 chr12 61561285 61561925 -59695605 + L1_Mus1 LINE L1 5295 5943 -624 8 1054 974 197 102 13 chr12 61562029 61562265 -59695265 + RLTR22_Mur LTR ERVK 1592 1848 0 8 1054 352 323 38 15 chr12 61562339 61562471 -59695059 + RSINE1 SINE B4 5 139 -26 8 1054 273 57 0 0 chr12 61562502 61562537 -59694993 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1054 186 167 0 0 chr12 61562542 61562578 -59694952 + (TTA)n Simple_repeat Simple_repeat 3 38 0 8 1054 354 287 74 106 chr12 61562904 61563188 -59694342 + L1MC3 LINE L1 7493 7767 -18 8 1054 29 0 0 0 chr12 61564389 61564418 -59693112 + AT_rich Low_complexity Low_complexity 1 29 0 9 1054 40987 3 0 4 chr12 61564420 61566934 -59690596 - L1Md_A LINE L1 0 6582 4085 9 1054 4221 13 0 0 chr12 61566934 61567408 -59690122 + L1Md_T LINE L1 6109 6582 0 9 1054 40987 7 0 4 chr12 61567408 61571691 -59685839 - L1Md_A LINE L1 -1799 4084 1 9 1054 422 262 87 25 chr12 61571698 61571846 -59685684 - B3 SINE B2 -9 186 34 9 1054 285 29 0 0 chr12 61571879 61571913 -59685617 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 9 1054 888 158 0 0 chr12 61571913 61572046 -59685484 - B2_Mm2 SINE B2 -36 159 27 9 1054 2173 68 0 4 chr12 61572058 61572339 -59685191 - L1_Mus1 LINE L1 -3 6564 6285 9 1054 230 331 22 39 chr12 61572816 61572998 -59684532 + L1MD2 LINE L1 6164 6342 -17 9 1054 27 0 0 0 chr12 61573375 61573402 -59684128 + AT_rich Low_complexity Low_complexity 1 27 0 9 1054 25 75 0 0 chr12 61573823 61573876 -59683654 + AT_rich Low_complexity Low_complexity 1 53 0 9 1054 1074 293 78 14 chr12 61574112 61574458 -59683072 - ORR1D1 LTR MaLR -6 368 1 1 1054 519 60 0 0 chr12 61574601 61574668 -59682862 + (TATG)n Simple_repeat Simple_repeat 1 67 0 1 1054 340 146 73 0 chr12 61574725 61574807 -59682723 + Lx9 LINE L1 7463 7550 -94 1 1054 21 36 0 0 chr12 61574837 61574865 -59682665 + AT_rich Low_complexity Low_complexity 1 28 0 1 1054 564 323 78 20 chr12 61574909 61575304 -59682226 - L1MA5 LINE L1 -244 6056 5639 1 1054 784 97 35 0 chr12 61575312 61575456 -59682074 - RMER17B LTR ERVK -498 460 312 1 1054 279 0 0 0 chr12 61575921 61575952 -59681578 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1054 230 321 95 35 chr12 61576383 61576499 -59681031 + MLT1F1 LTR MaLR 277 399 -170 1 1054 499 319 66 0 chr12 61576697 61576879 -59680651 + RMER15 LTR ERVL 370 563 -12 1 1054 1789 167 24 54 chr12 61576960 61577296 -59680234 + ORR1A3 LTR MaLR 1 326 0 1 1054 709 110 17 0 chr12 61578182 61578300 -59679230 + (TTTC)n Simple_repeat Simple_repeat 4 123 0 1 1054 1515 289 48 17 chr12 61578302 61578816 -59678714 - Lx6 LINE L1 -27 7433 6527 1 1054 31 58 0 0 chr12 61580014 61580066 -59677464 + AT_rich Low_complexity Low_complexity 1 52 0 1 1054 285 302 81 32 chr12 61580095 61580280 -59677250 - MER33 DNA MER1_type -90 234 41 1 1054 225 94 0 0 chr12 61581069 61581101 -59676429 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1054 4432 46 0 15 chr12 61581108 61581655 -59675875 - L1Md_T LINE L1 -66 6516 5978 1 1054 1591 163 3 7 chr12 61581659 61581943 -59675587 - Lx LINE L1 0 6654 6372 1 1054 220 325 38 0 chr12 61582054 61582134 -59675396 + B1F2 SINE Alu 19 101 -48 1 1054 390 411 108 41 chr12 61582412 61582929 -59674601 + MLT2F LTR ERVL 26 577 -86 1 1054 2909 52 3 0 chr12 61583555 61583921 -59673609 - L1Md_F2 LINE L1 0 6582 6216 1 1054 7587 159 39 31 chr12 61584500 61585898 -59671632 - Lx2 LINE L1 -1 6996 5587 1 1054 222 128 0 0 chr12 61586117 61586156 -59671374 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1054 60 53 0 0 chr12 61586264 61586359 -59671171 + AT_rich Low_complexity Low_complexity 1 95 0 1 1054 755 187 219 10 chr12 61586382 61586587 -59670943 + Lx3C LINE L1 5441 5688 -189 1 1054 5592 151 45 36 chr12 61586587 61586883 -59670647 + Lx3C LINE L1 5912 6199 -777 1 1054 943 103 29 0 chr12 61586883 61587019 -59670511 + B1_Mus1 SINE Alu 3 142 -6 1 1054 273 57 0 0 chr12 61587022 61587057 -59670473 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1054 5592 151 45 36 chr12 61587057 61587810 -59669720 + Lx3C LINE L1 6200 6975 -1 1 1054 565 305 88 31 chr12 61587830 61588124 -59669406 - Lx7 LINE L1 -2 7471 7161 1 1054 1245 134 143 29 chr12 61588151 61588396 -59669134 + RMER6C LTR ERVK 1 273 -417 1 1054 6136 114 19 6 chr12 61588397 61589399 -59668131 - Lx3C LINE L1 -451 6525 5513 1 1054 2077 88 10 7 chr12 61589390 61589700 -59667830 + L1_Mur1 LINE L1 3741 4051 -1835 1 1054 1098 258 39 35 chr12 61590467 61590927 -59666603 - Lx7 LINE L1 -1715 5981 5493 1 1054 396 369 19 25 chr12 61590945 61591106 -59666424 + RSINE1 SINE B4 2 161 -4 1 1054 22 70 0 0 chr12 61591117 61591160 -59666370 + AT_rich Low_complexity Low_complexity 1 43 0 1 1054 191 268 136 23 chr12 61591316 61591404 -59666126 - MIRb SINE MIR -60 208 111 1 1054 189 0 0 0 chr12 61592675 61592696 -59664834 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1054 2519 101 85 17 chr12 61592696 61593109 -59664421 - Lx3_Mus LINE L1 -22 6987 6547 1 1054 1523 49 0 0 chr12 61593211 61593396 -59664134 - B2_Mm1a SINE B2 -6 187 3 1 1054 2691 90 10 3 chr12 61593769 61594157 -59663373 + L1_Mus3 LINE L1 6247 6637 -1 1 1054 1077 319 15 42 chr12 61594160 61594566 -59662964 - Lx7 LINE L1 -393 7303 6909 1 1054 25 0 0 0 chr12 61594771 61594796 -59662734 + AT_rich Low_complexity Low_complexity 1 25 0 1 1054 569 244 25 0 chr12 61594965 61595084 -59662446 + ID_B1 SINE B4 95 216 -8 1 1054 1001 96 0 0 chr12 61595209 61595344 -59662186 + B1_Mus1 SINE Alu 2 136 -12 1 1054 200 59 29 0 chr12 61595346 61595380 -59662150 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1054 642 330 107 18 chr12 61595438 61595830 -59661700 - Lx8 LINE L1 -6 7467 7041 1 1054 3663 116 42 2 chr12 61597781 61598335 -59659195 - L1_Mus3 LINE L1 -4 6634 6059 1 1054 296 28 0 0 chr12 61598344 61598380 -59659150 - L1_Mus4 LINE L1 -774 5862 5827 1 1054 6596 86 26 17 chr12 61598388 61599583 -59657947 - L1Md_F2 LINE L1 -6 6632 5448 1 1054 4827 162 3 5 chr12 61599583 61600450 -59657080 + L1_Mm LINE L1 4471 5336 -547 1 1054 2167 141 28 6 chr12 61600451 61600808 -59656722 + L1_Mm LINE L1 5512 5876 -7 1 1054 3289 112 51 64 chr12 61600809 61601421 -59656109 + L1_Mus2 LINE L1 5961 6564 -2 1 1054 613 249 0 17 chr12 61601435 61601456 -59656074 + L1_Mm LINE L1 5236 5256 -591 1 1054 3247 115 10 4 chr12 61601456 61601955 -59655575 + L1_Mus3 LINE L1 6137 6638 0 1 1054 1290 53 6 0 chr12 61601955 61602125 -59655405 + L1_Mm LINE L1 5257 5456 -427 1 131 30947 31 26 25 chr12 61602125 61605351 -59652179 + L1_Mm LINE L1 1604 4913 -970 1 1055 238 272 31 61 chr12 61605351 61605449 -59652081 - RMER20A LTR ERVK -236 280 186 1 1055 30947 31 26 25 chr12 61605449 61606103 -59651427 + L1_Mm LINE L1 4914 5586 -297 1 1055 8386 36 0 0 chr12 61606103 61607098 -59650432 + L1Md_A LINE L1 5587 6581 -1 1 1055 1113 84 13 0 chr12 61607112 61607266 -59650264 + L1_Mm LINE L1 5447 5602 -281 1 1055 1180 67 0 0 chr12 61607263 61607412 -59650118 + L1Md_F2 LINE L1 6141 6289 -293 1 1055 237 281 57 94 chr12 61607519 61607625 -59649905 - MLT1J2 LTR MaLR -29 419 318 1 1055 189 74 0 0 chr12 61607679 61607706 -59649824 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1055 1763 233 159 19 chr12 61608223 61608708 -59648822 + Lx6 LINE L1 6570 7122 -338 1 1055 23 0 0 0 chr12 61609036 61609059 -59648471 + AT_rich Low_complexity Low_complexity 1 23 0 1 1055 663 193 9 0 chr12 61609195 61609309 -59648221 + RLTR33 LTR ERVK 564 678 0 1 1055 438 266 48 8 chr12 61609310 61609435 -59648095 + RLTR19-int LTR ERVK 2 131 -6006 1 1055 275 128 0 0 chr12 61609777 61609824 -59647706 + L1_Mur2 LINE L1 5216 5262 -615 1 1055 3340 181 117 19 chr12 61609872 61610654 -59646876 + RLTR19-int LTR ERVK 2330 3188 -2949 1 1055 29 90 0 0 chr12 61610671 61610749 -59646781 + AT_rich Low_complexity Low_complexity 1 78 0 1 1055 665 138 178 80 chr12 61610798 61611011 -59646519 + RLTR19-int LTR ERVK 3414 3647 -2490 1 1055 2449 185 109 32 chr12 61611044 61611655 -59645875 + RLTR19-int LTR ERVK 3724 4381 -1756 1 1055 22 0 0 0 chr12 61612681 61612703 -59644827 + AT_rich Low_complexity Low_complexity 1 22 0 1 1055 273 300 12 12 chr12 61612865 61612946 -59644584 - ID4_ SINE ID -1 82 2 1 1055 2230 177 62 46 chr12 61612988 61613508 -59644022 - RLTR12B LTR ERVK 0 528 1 1 1055 417 274 235 12 chr12 61613797 61613963 -59643567 + B3 SINE B2 2 204 -12 1 1055 25 31 0 0 chr12 61613965 61613997 -59643533 + AT_rich Low_complexity Low_complexity 1 32 0 1 1055 374 347 96 30 chr12 61614547 61614746 -59642784 + RMER15 LTR ERVL 299 510 -65 1 1055 1969 147 55 0 chr12 61615730 61616076 -59641454 - Lx2 LINE L1 -850 6147 5783 1 1055 1114 65 26 0 chr12 61616102 61616256 -59641274 - L1_Mus1 LINE L1 -1 6566 6409 1 1055 1939 188 0 17 chr12 61616257 61616615 -59640915 - RLTR28 LTR ERVL -170 354 3 1 1055 364 309 16 47 chr12 61618421 61618550 -59638980 + MLT1A0 LTR MaLR 38 162 -203 1 1055 24 77 0 0 chr12 61618819 61618871 -59638659 + AT_rich Low_complexity Low_complexity 1 52 0 1 1055 333 0 0 0 chr12 61619336 61619373 -59638157 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1055 399 253 144 30 chr12 61619388 61619624 -59637906 - L1M2 LINE L1 -1602 4541 4279 1 1055 304 302 51 58 chr12 61619650 61619950 -59637580 + L1_Mur3 LINE L1 5194 5528 -772 1 1055 209 204 0 0 chr12 61619974 61620023 -59637507 + A-rich Low_complexity Low_complexity 1 49 0 1 1055 318 285 26 167 chr12 61620042 61620198 -59637332 - RMER30 DNA MER1_type -49 153 20 1 1055 426 311 80 14 chr12 61620225 61620532 -59636998 + L1_Mur3 LINE L1 5527 5856 -328 1 1055 1016 261 90 8 chr12 61620526 61620857 -59636673 + Lx5 LINE L1 6651 6856 -194 1 1055 497 289 22 15 chr12 61620871 61621008 -59636522 + B4 SINE B4 32 169 -123 1 1055 980 179 103 33 chr12 61621074 61621288 -59636242 + MTC LTR MaLR 6 234 -187 1 1055 6922 179 25 10 chr12 61621288 61623025 -59634505 + Lx4B LINE L1 5281 7057 -1 1 1055 3020 243 107 14 chr12 61624135 61624966 -59632564 - Lx5 LINE L1 0 7050 6143 1 1055 786 56 0 0 chr12 61625976 61626084 -59631446 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 1055 441 190 65 57 chr12 61626102 61626225 -59631305 - Lx9 LINE L1 -1213 6431 6308 1 1055 188 0 0 69 chr12 61626812 61626841 -59630689 + (TTTTTA)n Simple_repeat Simple_repeat 1 27 0 1 1055 283 274 90 56 chr12 61627348 61627437 -59630093 - B1F1 SINE Alu -32 117 26 1 1055 1000 117 0 0 chr12 61630405 61630542 -59626988 + B1_Mus1 SINE Alu 2 138 -10 1 1055 315 0 0 0 chr12 61630542 61630577 -59626953 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1055 214 194 45 61 chr12 61630658 61630724 -59626806 + B3A SINE B2 99 163 -35 1 1055 466 18 18 0 chr12 61631717 61631773 -59625757 - L1_Mur1 LINE L1 -334 5552 5496 1 1055 183 80 0 0 chr12 61632117 61632142 -59625388 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1055 201 39 0 0 chr12 61632740 61632766 -59624764 + (TAAG)n Simple_repeat Simple_repeat 2 27 0 1 1055 373 281 62 99 chr12 61632880 61633011 -59624519 + RSINE1 SINE B4 1 125 -40 1 1055 447 35 0 0 chr12 61633011 61633068 -59624462 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1055 373 281 62 99 chr12 61633068 61633098 -59624432 + RSINE1 SINE B4 126 156 -9 1 1055 36 23 0 0 chr12 61633120 61633163 -59624367 + AT_rich Low_complexity Low_complexity 1 43 0 1 1055 310 217 194 19 chr12 61633197 61633305 -59624225 - MER94 DNA AcHobo -4 130 4 1 1055 495 315 8 0 chr12 61633627 61633757 -59623773 - RSINE1 SINE B4 -10 155 25 1 1055 705 24 0 0 chr12 61634329 61634412 -59623118 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1 1055 4828 66 75 22 chr12 61634412 61635082 -59622448 - L1Md_F2 LINE L1 -15 6567 5863 1 1055 306 316 26 17 chr12 61636645 61636761 -59620769 + MLT1A0 LTR MaLR 3 119 -246 2 1055 11858 15 0 0 chr12 61636811 61638883 -59618647 - L1Md_T LINE L1 -1 6581 4510 2 1055 679 353 96 25 chr12 61638970 61639325 -59618205 + MT2A LTR ERVL 151 530 -3 2 1055 392 285 117 43 chr12 61639347 61639548 -59617982 + MERVL_2A-int LTR ERVL 20 242 -5519 2 1055 459 0 0 0 chr12 61639548 61639599 -59617931 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2 1055 392 285 117 43 chr12 61639599 61639723 -59617807 + MERVL_2A-int LTR ERVL 243 369 -5392 2 1055 381 221 0 0 chr12 61639730 61639798 -59617732 + MERVL_2A-int LTR ERVL 485 552 -5209 2 1055 24 0 0 0 chr12 61639912 61639936 -59617594 + AT_rich Low_complexity Low_complexity 1 24 0 2 1055 1104 255 56 14 chr12 61640799 61641085 -59616445 + MTD LTR MaLR 6 303 -116 2 1055 399 298 58 64 chr12 61641711 61641883 -59615647 + ID_B1 SINE B4 6 176 -48 2 1055 323 308 0 0 chr12 61641879 61641970 -59615560 + ID_B1 SINE B4 134 224 0 2 1055 446 92 0 57 chr12 61642871 61642965 -59614565 - B1_Mus2 SINE Alu -1 148 66 2 1055 23 54 0 0 chr12 61642971 61643008 -59614522 + AT_rich Low_complexity Low_complexity 1 37 0 2 1055 426 177 73 0 chr12 61643057 61643153 -59614377 + B1_Mur3 SINE Alu 47 149 0 2 1055 221 135 0 19 chr12 61643154 61643207 -59614323 + (CAAAC)n Simple_repeat Simple_repeat 2 53 0 2 1055 202 222 16 0 chr12 61643216 61643279 -59614251 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 2 1055 33 25 0 0 chr12 61643655 61643695 -59613835 + AT_rich Low_complexity Low_complexity 1 40 0 2 1055 228 218 47 40 chr12 61643706 61643854 -59613676 + (TA)n Simple_repeat Simple_repeat 2 150 0 2 1055 429 20 0 0 chr12 61644261 61644311 -59613219 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1055 5512 125 45 38 chr12 61644470 61645421 -59612109 - RMER17B LTR ERVK 0 958 1 2 1055 24 0 0 0 chr12 61645503 61645527 -59612003 + AT_rich Low_complexity Low_complexity 1 24 0 2 1055 286 209 271 0 chr12 61646728 61646870 -59610660 - L1MB3 LINE L1 -8 6175 5996 2 1055 877 301 7 1 chr12 61646963 61647178 -59610352 + B3 SINE B2 1 216 0 2 1055 447 92 0 0 chr12 61647263 61647328 -59610202 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1055 31 26 0 0 chr12 61647379 61647417 -59610113 + AT_rich Low_complexity Low_complexity 1 38 0 2 1055 227 273 0 15 chr12 61647537 61647630 -59609900 + (CATATA)n Simple_repeat Simple_repeat 1 91 0 2 1055 234 0 0 0 chr12 61648160 61648186 -59609344 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1055 663 13 0 0 chr12 61648461 61648537 -59608993 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1055 561 99 0 0 chr12 61648888 61648969 -59608561 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1055 4495 144 17 16 chr12 61649857 61651221 -59606309 + L1VL4 LINE L1 475 1772 -2045 2 1055 504 313 49 57 chr12 61651823 61652070 -59605460 + RLTR26 LTR ERVK 170 414 -228 2 1055 4151 291 47 25 chr12 61652409 61653237 -59604293 - Lx7 LINE L1 -8 7688 6837 2 1055 204 0 0 77 chr12 61653237 61653276 -59604254 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1055 4151 291 47 25 chr12 61653276 61653905 -59603625 - Lx7 LINE L1 -860 6836 6199 2 1055 3088 241 75 25 chr12 61653900 61655011 -59602519 - L1_Mur3 LINE L1 -2539 3341 2176 2 1055 4351 114 29 6 chr12 61655008 61655668 -59601862 - L1VL4 LINE L1 -5441 861 187 2 1055 2681 248 57 21 chr12 61655659 61656666 -59600864 - L1_Mur3 LINE L1 -3688 2192 1147 2 1055 1245 153 9 5 chr12 61656666 61656889 -59600641 + Lx LINE L1 6431 6654 0 2 1055 1129 290 50 59 chr12 61656889 61657302 -59600228 - L1_Mur3 LINE L1 -6582 1146 752 2 1055 481 236 257 19 chr12 61657500 61657706 -59599824 - Lx9 LINE L1 -788 6856 6602 2 1055 1087 83 7 0 chr12 61657779 61657923 -59599607 + B1_Mus2 SINE Alu 2 146 -1 2 1055 187 93 23 23 chr12 61657923 61657967 -59599563 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2 1055 409 230 30 0 chr12 61658022 61658157 -59599373 + Lx9 LINE L1 7483 7621 -23 2 1055 24 77 0 0 chr12 61658934 61658986 -59598544 + AT_rich Low_complexity Low_complexity 1 52 0 2 1055 22 56 0 0 chr12 61659993 61660029 -59597501 + AT_rich Low_complexity Low_complexity 1 36 0 2 1055 421 385 30 12 chr12 61660064 61660469 -59597061 + Lx8 LINE L1 6679 7090 -383 2 1055 25 0 0 0 chr12 61660701 61660726 -59596804 + AT_rich Low_complexity Low_complexity 1 25 0 2 1055 688 204 33 0 chr12 61660972 61661124 -59596406 + L1_Mur3 LINE L1 4102 4258 -1622 2 1055 5027 234 30 34 chr12 61661131 61661991 -59595539 + L1_Mur3 LINE L1 4407 5263 -617 2 1055 465 66 0 0 chr12 61661991 61662052 -59595478 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1055 5027 234 30 34 chr12 61662052 61662670 -59594860 + L1_Mur3 LINE L1 5264 5880 0 2 1055 474 18 0 0 chr12 61662674 61662729 -59594801 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1055 2787 223 92 54 chr12 61662768 61663131 -59594399 - L1_Mur3 LINE L1 -2300 3580 3249 2 1055 904 130 0 14 chr12 61663131 61663279 -59594251 - B1_Mus1 SINE Alu 0 148 3 2 1055 320 43 0 21 chr12 61663279 61663326 -59594204 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2 1055 2787 223 92 54 chr12 61663326 61663964 -59593566 - L1_Mur3 LINE L1 -2632 3248 2541 2 1055 970 261 25 53 chr12 61663967 61664265 -59593265 + ORR1B2 LTR MaLR 5 278 -89 2 1055 431 224 10 10 chr12 61664241 61664340 -59593190 + ORR1B2-int LTR MaLR 1397 1495 -14 2 1055 930 253 48 4 chr12 61664347 61664577 -59592953 + ORR1B2 LTR MaLR 1 240 -127 2 1055 528 177 0 50 chr12 61664578 61664697 -59592833 - L1_Mur3 LINE L1 -6707 1021 909 2 1055 525 181 0 49 chr12 61664916 61665038 -59592492 - L1_Mur3 LINE L1 -6704 1024 909 2 1055 492 365 70 20 chr12 61665243 61665640 -59591890 + L1MB7 LINE L1 5745 6161 -23 2 1055 28 29 0 0 chr12 61666346 61666381 -59591149 + AT_rich Low_complexity Low_complexity 1 35 0 2 1055 2746 83 13 18 chr12 61666381 61666772 -59590758 - L1_Mus3 LINE L1 -7 6631 6243 2 1055 5388 101 27 2 chr12 61666779 61667961 -59589569 + L1_Mus3 LINE L1 4995 6211 -427 2 1055 2011 161 14 6 chr12 61667968 61668330 -59589200 - Lx2 LINE L1 0 6997 6633 2 1055 1821 180 9 0 chr12 61668330 61668680 -59588850 + L1_Mur1 LINE L1 4645 4997 -889 2 1055 242 279 104 96 chr12 61669097 61669347 -59588183 - Charlie10 DNA MER1_type -1125 1697 1446 2 1055 28 61 0 0 chr12 61669485 61669534 -59587996 + AT_rich Low_complexity Low_complexity 1 49 0 2 1055 290 322 59 0 chr12 61669575 61669727 -59587803 + RSINE1 SINE B4 5 165 0 2 1055 3046 50 10 0 chr12 61669732 61670116 -59587414 + RLTR10 LTR ERVK 1 388 -2 2 1055 419 300 53 61 chr12 61670142 61670405 -59587125 + Lx9 LINE L1 7329 7589 -55 2 1055 400 349 98 48 chr12 61672089 61672186 -59585344 + L1MC3 LINE L1 5353 5446 -898 2 1055 510 61 0 0 chr12 61672186 61672252 -59585278 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 1055 400 349 98 48 chr12 61672252 61672551 -59584979 + L1MC3 LINE L1 5447 5769 -575 2 1055 326 292 160 0 chr12 61672646 61672858 -59584672 + L1MC3 LINE L1 5903 6148 -1637 2 1055 2110 116 19 6 chr12 61672866 61673188 -59584342 + Lx2 LINE L1 6670 6995 -2 2 1055 3410 236 22 27 chr12 61673442 61674287 -59583243 + Lx7 LINE L1 6806 7646 -50 2 1055 369 259 0 0 chr12 61674292 61674404 -59583126 + Lx7 LINE L1 7585 7696 0 2 1055 2582 166 97 11 chr12 61674840 61675495 -59582035 + Lx2 LINE L1 6216 7004 -4 2 1055 322 269 68 33 chr12 61676015 61676361 -59581169 + Lx7 LINE L1 7284 7696 0 2 1055 327 320 122 51 chr12 61676415 61676485 -59581045 - ERVL-E-int LTR ERVL -2315 3352 3284 2 1055 285 100 0 0 chr12 61676485 61676535 -59580995 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 2 1055 327 320 122 51 chr12 61676535 61676760 -59580770 - ERVL-E-int LTR ERVL -2384 3283 3036 2 1055 572 211 12 18 chr12 61676897 61677061 -59580469 + Lx9 LINE L1 7477 7639 -5 2 1055 24 0 0 0 chr12 61677151 61677175 -59580355 + AT_rich Low_complexity Low_complexity 1 24 0 2 1055 3254 106 16 0 chr12 61678314 61678855 -59578675 + Lx LINE L1 5507 6055 -599 2 1055 882 189 13 0 chr12 61679021 61679180 -59578350 - ORR1A3 LTR MaLR -10 316 156 2 1055 218 152 59 51 chr12 61679185 61679303 -59578227 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 1055 268 149 27 47 chr12 61679326 61679474 -59578056 + (TA)n Simple_repeat Simple_repeat 1 145 0 2 1055 343 221 21 64 chr12 61679534 61679722 -59577808 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 2 1055 224 229 47 19 chr12 61679709 61679816 -59577714 + (TATAA)n Simple_repeat Simple_repeat 5 114 0 2 1055 286 239 241 16 chr12 61680007 61680128 -59577402 - Lx9 LINE L1 -15 7629 7484 2 1055 540 0 0 0 chr12 61680128 61680188 -59577342 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2 1055 286 239 241 16 chr12 61680188 61680253 -59577277 - Lx9 LINE L1 -161 7483 7402 2 1055 21 0 0 0 chr12 61680971 61680992 -59576538 + AT_rich Low_complexity Low_complexity 1 21 0 2 1055 183 114 0 0 chr12 61681434 61681469 -59576061 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1055 259 320 0 13 chr12 61682027 61682103 -59575427 + PB1D7 SINE Alu 25 99 -21 2 1055 263 261 34 51 chr12 61682165 61682282 -59575248 - L1MC4 LINE L1 -379 7663 7549 2 1055 261 71 71 0 chr12 61682528 61682584 -59574946 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2 1055 725 288 86 40 chr12 61682585 61683038 -59574492 - Lx6 LINE L1 -692 6358 5826 2 1055 2181 316 40 48 chr12 61683863 61684917 -59572613 + Lx9 LINE L1 6143 7187 -457 2 1055 1407 132 14 0 chr12 61685037 61685257 -59572273 - L1_Mur1 LINE L1 -144 5742 5520 2 1055 600 319 129 8 chr12 61685269 61685509 -59572021 - MTE2b LTR MaLR -60 319 51 2 1055 4833 112 43 1 chr12 61685641 61686380 -59571150 + Lx3A LINE L1 6195 6964 -17 2 1055 29 47 0 0 chr12 61686588 61686631 -59570899 + AT_rich Low_complexity Low_complexity 1 43 0 2 1055 324 295 131 52 chr12 61686918 61687186 -59570344 - Lx8 LINE L1 -28 7445 7157 2 1055 1028 43 0 35 chr12 61687296 61687440 -59570090 + B1_Mm SINE Alu 9 147 0 2 1055 365 113 0 0 chr12 61687825 61687887 -59569643 - Lx2 LINE L1 0 6997 6936 2 1055 681 291 34 34 chr12 61688449 61688741 -59568789 + L1_Mur3 LINE L1 3664 3955 -1925 2 1055 4830 78 11 1 chr12 61688755 61689414 -59568116 - L1_Mus1 LINE L1 -1 6566 5902 2 1055 24 0 0 0 chr12 61689498 61689522 -59568008 + AT_rich Low_complexity Low_complexity 1 24 0 2 1055 27 49 0 0 chr12 61689847 61689888 -59567642 + AT_rich Low_complexity Low_complexity 1 41 0 2 1055 9152 100 10 5 chr12 61690945 61692258 -59565272 + Lx3_Mus LINE L1 5666 6985 -24 2 1055 1090 86 0 0 chr12 61692263 61692403 -59565127 + B1_Mus2 SINE Alu 3 142 -5 2 1055 410 0 0 20 chr12 61692405 61692456 -59565074 + (TAA)n Simple_repeat Simple_repeat 1 50 0 2 1055 22 35 0 0 chr12 61692461 61692490 -59565040 + AT_rich Low_complexity Low_complexity 1 29 0 2 1055 26 30 0 0 chr12 61692604 61692637 -59564893 + AT_rich Low_complexity Low_complexity 1 33 0 2 1055 860 268 14 18 chr12 61693127 61693344 -59564186 + B3 SINE B2 1 216 0 2 1055 21 71 0 0 chr12 61693403 61693445 -59564085 + AT_rich Low_complexity Low_complexity 1 42 0 3 1055 975 170 58 31 chr12 61693455 61693680 -59563850 - Lx3B LINE L1 -5 6968 6738 3 1055 530 132 38 0 chr12 61693683 61693789 -59563741 - Lx3C LINE L1 -8 6968 6859 3 1055 1253 210 59 0 chr12 61693797 61694069 -59563461 - L1_Mur2 LINE L1 -39 5838 5551 3 1055 2426 69 9 0 chr12 61694072 61694407 -59563123 + ORR1A1 LTR MaLR 1 338 -8 3 1055 1730 221 13 5 chr12 61694410 61694787 -59562743 - L1_Mur2 LINE L1 -324 5553 5174 3 1055 369 0 0 0 chr12 61694815 61694856 -59562674 + (TTA)n Simple_repeat Simple_repeat 1 41 0 3 1055 1424 181 4 18 chr12 61694860 61695141 -59562389 - Lx3B LINE L1 -2 6971 6695 3 1055 22 35 0 0 chr12 61695141 61695170 -59562360 + AT_rich Low_complexity Low_complexity 1 29 0 3 1055 594 268 48 101 chr12 61696553 61696781 -59560749 + B3 SINE B2 1 216 0 3 1055 244 167 93 0 chr12 61697013 61697067 -59560463 + MLT2B4 LTR ERVL 196 254 -302 3 1055 185 317 71 31 chr12 61697067 61697194 -59560336 - L3 LINE CR1 -2107 2382 2251 3 1055 390 57 0 0 chr12 61697199 61697252 -59560278 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1055 1562 258 48 40 chr12 61698472 61698968 -59558562 - RLTR40 LTR ERVK -5 812 313 3 1055 1217 235 113 9 chr12 61698998 61699342 -59558188 - RMER5 LTR ERV1 -150 384 5 3 1055 256 149 0 21 chr12 61699379 61699427 -59558103 - RLTR40 LTR ERVK -534 283 237 3 1055 2183 229 20 141 chr12 61699427 61700208 -59557322 + RMER1A Other Other 78 764 -266 3 1055 201 74 0 0 chr12 61700320 61700347 -59557183 + (CTCTG)n Simple_repeat Simple_repeat 1 27 0 3 1055 884 196 40 26 chr12 61700674 61700900 -59556630 + RMER1A Other Other 751 979 -51 3 1055 981 243 17 13 chr12 61700900 61701133 -59556397 - RLTR40 LTR ERVK -583 234 1 3 1055 22 88 0 0 chr12 61701349 61701406 -59556124 + AT_rich Low_complexity Low_complexity 1 57 0 3 1055 350 232 0 0 chr12 61701933 61702002 -59555528 + B3 SINE B2 3 71 -145 3 1055 225 0 0 0 chr12 61702003 61702028 -59555502 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1055 1912 242 59 39 chr12 61702048 61702559 -59554971 + RMER19C LTR ERVK 78 598 -13 3 1055 236 215 25 12 chr12 61702559 61702639 -59554891 + GA-rich Low_complexity Low_complexity 1 81 0 3 1055 435 52 0 0 chr12 61703214 61703272 -59554258 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1055 186 71 0 0 chr12 61705162 61705190 -59552340 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1055 1110 96 0 0 chr12 61705197 61705343 -59552187 - B1_Mm SINE Alu 0 147 2 3 1055 3687 74 6 12 chr12 61706173 61706678 -59550852 + L1Md_F2 LINE L1 6077 6578 -4 3 1055 54 56 0 0 chr12 61706755 61706844 -59550686 + AT_rich Low_complexity Low_complexity 1 89 0 3 1055 306 0 0 0 chr12 61706978 61707012 -59550518 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1055 690 307 24 43 chr12 61707426 61707634 -59549896 + ID_B1 SINE B4 8 211 -13 3 1055 1085 106 0 6 chr12 61707902 61708083 -59549447 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1055 21 36 0 0 chr12 61708197 61708225 -59549305 + AT_rich Low_complexity Low_complexity 1 28 0 3 1055 21 0 0 0 chr12 61708330 61708351 -59549179 + AT_rich Low_complexity Low_complexity 1 21 0 3 1055 1314 236 57 10 chr12 61708789 61709191 -59548339 - MTC LTR MaLR 0 421 1 3 1055 268 227 0 30 chr12 61709349 61709449 -59548081 + (TATG)n Simple_repeat Simple_repeat 3 99 0 3 1055 345 324 117 50 chr12 61709623 61710127 -59547403 - L1MA4 LINE L1 -400 5900 5363 3 1055 363 298 112 45 chr12 61710276 61710543 -59546987 + L1M4 LINE L1 2325 2609 -3537 3 1055 515 16 16 0 chr12 61710582 61710646 -59546884 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1055 1781 242 27 107 chr12 61710806 61711113 -59546417 - Lx6 LINE L1 -10 7450 7154 3 1055 315 49 0 0 chr12 61711113 61711154 -59546376 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 1055 1781 242 27 107 chr12 61711154 61711368 -59546162 - Lx6 LINE L1 -307 7153 6971 3 1055 9952 208 40 14 chr12 61711372 61714194 -59543336 - Lx6 LINE L1 -965 6495 3607 3 1055 2014 213 31 35 chr12 61714350 61714937 -59542593 + RLTR25A LTR ERVK 403 1028 0 3 1055 632 357 58 11 chr12 61714942 61715203 -59542327 + Lx8 LINE L1 6476 6748 -725 3 1055 1091 229 21 32 chr12 61715591 61715875 -59541655 - RMER1B Other Other -3 1063 783 3 1055 34 0 0 0 chr12 61716248 61716282 -59541248 + AT_rich Low_complexity Low_complexity 1 34 0 3 1055 1528 157 0 0 chr12 61716335 61716583 -59540947 + Lx2 LINE L1 6401 6648 -349 3 1055 1235 159 19 0 chr12 61716578 61716792 -59540738 + Lx2 LINE L1 6775 6992 -5 3 1055 1051 277 68 16 chr12 61716768 61717150 -59540380 + Lx9 LINE L1 7072 7473 -171 3 1055 519 107 0 0 chr12 61717153 61717237 -59540293 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 1055 347 256 25 8 chr12 61717238 61717360 -59540170 + Lx9 LINE L1 7520 7643 -1 3 1055 588 241 15 0 chr12 61717467 61717600 -59539930 - B1_Mus1 SINE Alu 0 148 14 3 1055 26 0 0 0 chr12 61718440 61718466 -59539064 + AT_rich Low_complexity Low_complexity 1 26 0 3 1055 774 348 26 23 chr12 61718494 61718759 -59538771 - B4A SINE B4 0 292 27 3 1055 26 30 0 0 chr12 61718829 61718862 -59538668 + AT_rich Low_complexity Low_complexity 1 33 0 3 1055 1100 82 0 13 chr12 61719478 61719627 -59537903 + B1_Mm SINE Alu 1 147 0 3 1055 29 0 0 0 chr12 61719641 61719670 -59537860 + AT_rich Low_complexity Low_complexity 1 29 0 3 1055 1055 78 0 0 chr12 61719670 61719812 -59537718 + B1_Mus1 SINE Alu 1 142 -6 3 1055 279 21 62 0 chr12 61719813 61719861 -59537669 + (CAA)n Simple_repeat Simple_repeat 1 51 0 3 1055 186 43 0 0 chr12 61719866 61719889 -59537641 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1055 21 36 0 0 chr12 61720159 61720187 -59537343 + AT_rich Low_complexity Low_complexity 1 28 0 3 1055 6074 43 3 0 chr12 61720234 61720975 -59536555 + L1Md_F2 LINE L1 5616 6358 -224 3 1055 513 64 0 0 chr12 61720978 61721074 -59536456 + L1Md_F2 LINE L1 6493 6584 0 3 1055 21 0 0 0 chr12 61721405 61721426 -59536104 + AT_rich Low_complexity Low_complexity 1 21 0 3 1055 279 376 0 0 chr12 61721751 61721860 -59535670 - B3A SINE B2 -30 168 60 3 1055 925 123 12 12 chr12 61721891 61722063 -59535467 - Lx LINE L1 0 6654 6483 3 1055 693 24 0 0 chr12 61722191 61722274 -59535256 + (GTTTG)n Simple_repeat Simple_repeat 2 84 0 3 1055 183 80 0 0 chr12 61722531 61722556 -59534974 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1055 5857 168 14 15 chr12 61723672 61724788 -59532742 - Lx2 LINE L1 0 6997 5883 3 1055 592 285 164 8 chr12 61725156 61725418 -59532112 - Lx8 LINE L1 -564 6909 6607 3 1055 366 281 96 141 chr12 61725465 61725884 -59531646 + RLTR40 LTR ERVK 217 616 -201 3 1055 2266 125 0 3 chr12 61726790 61727118 -59530412 - ORR1A2 LTR MaLR 0 327 1 3 1055 762 274 82 99 chr12 61727402 61727551 -59529979 - Lx6 LINE L1 -183 7277 7133 3 1055 270 0 0 0 chr12 61727551 61727581 -59529949 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1055 762 274 82 99 chr12 61727581 61727723 -59529807 - Lx6 LINE L1 -328 7132 6991 3 1055 411 252 109 0 chr12 61727805 61727924 -59529606 + Lx6 LINE L1 7319 7450 -10 3 1055 351 188 162 38 chr12 61727997 61728076 -59529454 - Lx3B LINE L1 -918 6058 5965 3 1055 1455 28 0 0 chr12 61728076 61728256 -59529274 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1055 351 188 162 38 chr12 61728256 61728281 -59529249 - Lx3B LINE L1 -1012 5964 5941 3 1055 1356 58 0 2 chr12 61728281 61728679 -59528851 + (TTC)n Simple_repeat Simple_repeat 1 397 0 3 1055 4441 133 6 6 chr12 61728679 61729478 -59528052 - Lx3B LINE L1 -1017 5956 5158 3 1055 854 163 118 0 chr12 61729471 61729649 -59527881 + Lx3C LINE L1 6776 6974 -2 3 1055 42 20 0 0 chr12 61729650 61729699 -59527831 + AT_rich Low_complexity Low_complexity 1 49 0 3 1055 24 53 0 0 chr12 61729928 61729966 -59527564 + AT_rich Low_complexity Low_complexity 1 38 0 3 1055 22 35 0 0 chr12 61730704 61730733 -59526797 + AT_rich Low_complexity Low_complexity 1 29 0 3 1055 3598 196 45 14 chr12 61731108 61731894 -59525636 + Lx3C LINE L1 6165 6974 -2 3 1055 357 331 98 0 chr12 61731909 61732042 -59525488 + B3A SINE B2 48 193 -5 3 1055 22 0 0 0 chr12 61733907 61733929 -59523601 + AT_rich Low_complexity Low_complexity 1 22 0 3 1055 1224 109 34 15 chr12 61734043 61734226 -59523304 + Lx LINE L1 6440 6628 -26 3 131 6241 35 1 8 chr12 61734226 61734986 -59522544 + L1Md_F3 LINE L1 5820 6574 -10 3 1056 1224 109 34 15 chr12 61734986 61735007 -59522523 + Lx LINE L1 6629 6648 -6 3 1056 207 0 0 0 chr12 61735206 61735229 -59522301 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 3 1056 2045 119 15 0 chr12 61735238 61735566 -59521964 - Lx2 LINE L1 -5 6992 6660 3 1056 2171 173 16 3 chr12 61736156 61736522 -59521008 + ORR1B1 LTR MaLR 2 372 -22 3 1056 691 319 78 77 chr12 61736642 61737060 -59520470 + MTE2a LTR MaLR 1 396 -23 3 1056 378 0 0 0 chr12 61737119 61737161 -59520369 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1056 289 343 92 6 chr12 61737855 61738028 -59519502 + RMER15 LTR ERVL 296 483 -92 3 1056 333 0 0 0 chr12 61738554 61738591 -59518939 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1056 218 362 113 60 chr12 61738625 61738775 -59518755 + RSINE1 SINE B4 6 163 -2 3 1056 1259 178 22 67 chr12 61738866 61739180 -59518350 - Lx7 LINE L1 0 7696 7397 3 1056 746 225 276 28 chr12 61739180 61739532 -59517998 + RMER6D LTR ERVK 2 440 -250 3 1056 450 91 52 0 chr12 61739607 61739661 -59517869 + Lx4B LINE L1 5855 5911 -1147 3 1056 351 0 0 0 chr12 61739661 61739700 -59517830 + (TAA)n Simple_repeat Simple_repeat 2 40 0 3 1056 450 91 52 0 chr12 61739700 61739722 -59517808 + Lx4B LINE L1 5912 5934 -1124 3 1056 848 82 8 0 chr12 61740162 61740284 -59517246 + (GAAAA)n Simple_repeat Simple_repeat 3 125 0 3 1056 256 132 0 0 chr12 61740318 61740356 -59517174 + B2_Mm2 SINE B2 1 38 -157 3 1056 376 288 46 44 chr12 61740583 61740780 -59516750 + RLTR13C1 LTR ERVK 808 1072 -42 3 1056 6998 109 11 21 chr12 61740780 61741849 -59515681 + Lx3_Mus LINE L1 5929 6987 -22 3 1056 22 0 0 0 chr12 61741849 61741871 -59515659 + AT_rich Low_complexity Low_complexity 1 22 0 3 1056 936 217 38 85 chr12 61741871 61742208 -59515322 + RMER6D LTR ERVK 459 720 0 3 1056 3554 245 65 106 chr12 61742211 61742659 -59514871 - Lx7 LINE L1 -290 7406 7003 3 1056 1223 80 11 0 chr12 61742659 61742835 -59514695 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 3 1056 3554 245 65 106 chr12 61742835 61743632 -59513898 - Lx7 LINE L1 -694 7002 6212 3 1056 22 35 0 0 chr12 61744246 61744275 -59513255 + AT_rich Low_complexity Low_complexity 1 29 0 3 1056 1310 229 132 12 chr12 61745298 61745625 -59511905 + ORR1D1 LTR MaLR 1 366 -8 3 1056 200 128 0 25 chr12 61745901 61745941 -59511589 + A-rich Low_complexity Low_complexity 2 40 0 4 1056 199 297 13 63 chr12 61746501 61746580 -59510950 - L2c LINE L2 -1 3386 3312 4 1056 21 57 0 0 chr12 61746845 61746880 -59510650 + AT_rich Low_complexity Low_complexity 1 35 0 4 1056 5354 134 22 2 chr12 61746908 61747761 -59509769 - Lx LINE L1 -2 6652 5783 4 1056 4870 58 5 16 chr12 61747773 61748149 -59509381 - L1_Mus1 LINE L1 0 6567 6201 4 1056 2858 39 0 0 chr12 61748149 61748481 -59509049 + IAPEY3_LTR LTR ERVK 1 332 0 4 1056 4870 58 5 16 chr12 61748481 61748750 -59508780 - L1_Mus1 LINE L1 -367 6200 5929 4 1056 2311 129 0 0 chr12 61748751 61749107 -59508423 + L1_Mm LINE L1 4936 5291 -592 4 1056 9526 79 9 170 chr12 61749106 61750336 -59507194 + L1_Mus1 LINE L1 4340 5586 -297 4 1056 7916 58 4 0 chr12 61750336 61751328 -59506202 + L1Md_F2 LINE L1 5587 6582 0 4 1056 9526 71 4 77 chr12 61751328 61752015 -59505515 + L1_Mus1 LINE L1 5587 5961 -606 4 1056 2808 135 0 2 chr12 61752007 61752439 -59505091 - L1_Mus1 LINE L1 -82 5801 5371 4 1056 249 198 53 26 chr12 61752708 61752822 -59504708 + (TTATA)n Simple_repeat Simple_repeat 1 117 0 4 1056 294 265 60 20 chr12 61753512 61753612 -59503918 + MTEb LTR MaLR 272 375 -4 4 1056 195 42 0 0 chr12 61753691 61753715 -59503815 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1056 329 331 68 36 chr12 61753750 61754001 -59503529 - Lx7 LINE L1 -9 7464 7206 4 1056 2271 292 91 25 chr12 61754087 61755822 -59501708 - Lx7 LINE L1 -686 7010 5154 4 1056 793 182 6 29 chr12 61755881 61756051 -59501479 - Lx4B LINE L1 -4 7054 6889 4 1056 37 39 0 0 chr12 61756053 61756104 -59501426 + AT_rich Low_complexity Low_complexity 1 51 0 4 1056 655 207 50 0 chr12 61756109 61756249 -59501281 - B1_Mur2 SINE Alu -2 147 1 4 1056 360 0 0 0 chr12 61756287 61756327 -59501203 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1056 246 242 161 0 chr12 61756330 61756389 -59501141 - B3A SINE B2 -50 148 80 4 1056 2643 63 77 0 chr12 61756389 61756755 -59500775 - MTA_Mm LTR MaLR 0 396 3 4 1056 24 53 0 0 chr12 61756869 61756907 -59500623 + AT_rich Low_complexity Low_complexity 1 38 0 4 1056 454 236 79 0 chr12 61757122 61757249 -59500281 - URR1A DNA MER1_type -75 151 15 4 1056 1060 287 48 14 chr12 61757260 61757702 -59499828 - Lx7 LINE L1 -876 5004 4548 4 1056 464 317 7 28 chr12 61758318 61758461 -59499069 + B1_Mur2 SINE Alu 10 149 0 4 1056 8664 61 2 0 chr12 61758806 61759905 -59497625 - L1_Mm LINE L1 -20 5863 4763 4 1056 6227 40 10 5 chr12 61759906 61760687 -59496843 + L1Md_F3 LINE L1 5800 6584 0 4 1056 219 293 0 0 chr12 61760955 61760996 -59496534 + RSINE1 SINE B4 34 74 -91 4 1056 600 321 84 19 chr12 61761628 61761841 -59495689 + ORR1D2 LTR MaLR 1 227 -143 4 1056 449 34 17 0 chr12 61762146 61762205 -59495325 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 4 1056 29 28 0 0 chr12 61762499 61762535 -59494995 + AT_rich Low_complexity Low_complexity 1 36 0 4 1056 642 270 41 100 chr12 61762628 61762900 -59494630 + RMER12 LTR ERVK 1003 1216 -106 4 1056 23 33 0 0 chr12 61762986 61763016 -59494514 + AT_rich Low_complexity Low_complexity 1 30 0 4 1056 633 27 0 0 chr12 61763149 61763224 -59494306 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1056 351 0 0 0 chr12 61765124 61765163 -59492367 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1056 255 283 24 103 chr12 61766432 61766558 -59490972 - Lx7 LINE L1 -1168 6305 6190 4 1056 747 282 29 38 chr12 61766736 61767164 -59490366 - Lx7 LINE L1 -1505 5968 5501 4 1056 1276 166 9 32 chr12 61767180 61767439 -59490091 - Lx3B LINE L1 0 7000 6746 4 1056 3250 158 17 50 chr12 61767611 61768210 -59489320 - Lx3B LINE L1 -225 6748 6170 4 1056 2932 104 57 26 chr12 61768225 61768683 -59488847 + L1_Mur1 LINE L1 4161 4631 -1255 4 1056 296 48 24 0 chr12 61768683 61768725 -59488805 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 4 1056 2932 104 57 26 chr12 61768725 61768760 -59488770 + L1_Mur1 LINE L1 4632 4667 -1219 4 1056 2970 103 0 0 chr12 61768788 61769195 -59488335 - MTB_Mm LTR MaLR 0 407 1 4 1056 1438 248 88 32 chr12 61769230 61769800 -59487730 - L1_Mur3 LINE L1 -426 5454 4853 4 1056 1277 327 41 12 chr12 61769812 61770325 -59487205 + Lx8 LINE L1 6341 6868 -605 4 1056 395 329 92 13 chr12 61770354 61770582 -59486948 + Lx7 LINE L1 6979 7224 -472 4 1056 195 100 0 0 chr12 61770655 61770685 -59486845 + (GGA)n Simple_repeat Simple_repeat 1 30 0 4 1056 21 0 0 0 chr12 61771026 61771047 -59486483 + AT_rich Low_complexity Low_complexity 1 21 0 4 1056 29 0 0 0 chr12 61771604 61771633 -59485897 + AT_rich Low_complexity Low_complexity 1 29 0 4 1056 372 285 8 0 chr12 61771633 61771756 -59485774 - Lx6 LINE L1 0 7460 7337 4 1056 1341 166 69 42 chr12 61771956 61772290 -59485240 - RMER6C LTR ERVK 0 690 348 4 1056 217 254 40 53 chr12 61772352 61772427 -59485103 - B1_Mm SINE Alu -49 98 25 4 1056 1816 176 0 3 chr12 61772427 61772757 -59484773 + Lx LINE L1 4484 4812 -1074 4 1056 6534 139 14 12 chr12 61772755 61773664 -59483866 + Lx LINE L1 5427 6337 -317 4 1056 207 0 0 0 chr12 61773664 61773687 -59483843 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 4 1056 6534 134 15 15 chr12 61773687 61773835 -59483695 + Lx LINE L1 6338 6484 -170 4 1056 2063 142 22 11 chr12 61773835 61774199 -59483331 - RLTR9A LTR ERVK 0 368 1 4 1056 6534 134 15 15 chr12 61774199 61774363 -59483167 + Lx LINE L1 6485 6648 -6 4 1056 28 0 0 0 chr12 61774385 61774413 -59483117 + AT_rich Low_complexity Low_complexity 1 28 0 4 1056 1163 167 22 9 chr12 61774413 61774642 -59482888 - Lx4A LINE L1 -1 7057 6826 4 1056 454 179 13 0 chr12 61774645 61774723 -59482807 - MT2B LTR ERVL -342 259 181 4 1056 536 203 113 8 chr12 61774683 61774807 -59482723 - RMER6C LTR ERVK -553 137 1 4 1056 1087 296 69 63 chr12 61774883 61775080 -59482450 + Lx7 LINE L1 6431 6622 -1074 4 1056 4268 57 25 7 chr12 61775080 61775630 -59481900 + LTRIS2 LTR ERV1 5 564 0 4 1056 1087 296 69 63 chr12 61775630 61775952 -59481578 + Lx7 LINE L1 6623 6953 -743 4 1056 1834 262 12 37 chr12 61776714 61777198 -59480332 + RMER19C LTR ERVK 138 609 -2 4 1056 1647 35 0 0 chr12 61777237 61777440 -59480090 - L1_Mus2 LINE L1 -6 6560 6358 4 1056 403 356 0 8 chr12 61778138 61778268 -59479262 + RSINE1 SINE B4 1 129 -36 4 1056 285 109 0 0 chr12 61778271 61778317 -59479213 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1056 25 0 0 0 chr12 61778477 61778502 -59479028 + AT_rich Low_complexity Low_complexity 1 25 0 4 1056 11934 168 14 9 chr12 61778507 61781599 -59475931 - Lx LINE L1 -7 6647 3536 4 1056 5216 122 41 36 chr12 61781596 61782757 -59474773 - L1VL2 LINE L1 -2316 1299 140 4 1056 357 99 79 0 chr12 61782848 61782949 -59474581 + A-rich Low_complexity Low_complexity 2 110 0 4 1056 599 300 148 18 chr12 61782954 61783399 -59474131 + L1_Mur3 LINE L1 2562 3064 -2816 4 1056 2208 68 7 0 chr12 61783608 61783902 -59473628 + L1_Mus3 LINE L1 5587 5882 -756 4 1056 4995 140 19 45 chr12 61783902 61784790 -59472740 + L1_Mus4 LINE L1 5772 6636 0 4 1056 582 290 28 19 chr12 61785120 61785334 -59472196 - B3 SINE B2 0 216 1 4 1056 420 55 0 0 chr12 61786151 61786206 -59471324 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 4 1056 228 216 0 0 chr12 61786832 61786883 -59470647 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 1056 189 171 0 0 chr12 61787544 61787579 -59469951 + A-rich Low_complexity Low_complexity 1 35 0 4 1056 3069 134 38 2 chr12 61788264 61788764 -59468766 - Lx3A LINE L1 -3 6978 6461 4 1056 248 78 45 30 chr12 61788768 61788834 -59468696 + A-rich Low_complexity Low_complexity 2 68 0 4 1056 4501 150 15 54 chr12 61788834 61790161 -59467369 + Lx3_Mus LINE L1 5255 6467 -542 4 1056 234 340 39 32 chr12 61790762 61790917 -59466613 + RSINE1 SINE B4 4 159 -6 4 1056 213 39 0 0 chr12 61790968 61790994 -59466536 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1056 1119 29 43 0 chr12 61790994 61791134 -59466396 - B1_Mm SINE Alu 0 147 2 4 1056 934 300 46 0 chr12 61791445 61791703 -59465827 - ORR1D2 LTR MaLR -2 368 98 4 1056 232 143 0 0 chr12 61791703 61791738 -59465792 - URR1B DNA MER1_type 0 225 191 4 1056 573 200 8 0 chr12 61791768 61791888 -59465642 - URR1B DNA MER1_type -2 223 103 4 1056 235 272 160 52 chr12 61791888 61791962 -59465568 + CYRA11_Mm Unknown Y-chromosome 173 387 -230 4 1056 284 351 15 44 chr12 61791945 61792082 -59465448 - ORR1C1 LTR MaLR -245 133 1 4 1056 6906 178 98 16 chr12 61792399 61794380 -59463150 - Lx2B LINE L1 -5 6995 4858 4 1056 290 24 48 0 chr12 61794380 61794422 -59463108 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1056 6906 160 94 23 chr12 61794422 61794482 -59463048 - Lx2B LINE L1 -1020 4857 4793 4 1056 258 32 0 0 chr12 61794482 61794513 -59463017 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1056 6906 160 94 23 chr12 61794513 61795001 -59462529 - Lx2B LINE L1 -1085 4792 4238 4 1056 241 250 0 0 chr12 61795018 61795086 -59462444 + T-rich Low_complexity Low_complexity 1 68 0 4 1056 583 209 45 27 chr12 61795253 61795474 -59462056 - Lx9 LINE L1 -1 7643 7419 4 1056 214 239 63 18 chr12 61795474 61795585 -59461945 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 1056 675 216 74 0 chr12 61795585 61795733 -59461797 - Lx9 LINE L1 -212 7432 7274 4 1056 3300 210 68 100 chr12 61795757 61796616 -59460914 - RMER13A LTR ERVK -29 831 1 4 1056 758 296 73 55 chr12 61796633 61797174 -59460356 - L1M2 LINE L1 -480 5400 4849 4 1056 1054 241 78 47 chr12 61797174 61797535 -59459995 - ORR1D1 LTR MaLR 0 374 3 4 1056 23 78 0 0 chr12 61798057 61798108 -59459422 + AT_rich Low_complexity Low_complexity 1 51 0 4 1056 423 329 70 0 chr12 61799333 61799536 -59457994 - ORR1E LTR MaLR -4 355 133 4 1056 284 306 105 36 chr12 61800437 61800742 -59456788 + L1MC4a LINE L1 7479 7804 -78 4 1056 48 81 0 0 chr12 61800776 61800887 -59456643 + AT_rich Low_complexity Low_complexity 1 111 0 4 1056 743 309 11 69 chr12 61801103 61801482 -59456048 + Lx9 LINE L1 6621 6977 -667 4 1056 929 230 65 21 chr12 61802292 61802550 -59454980 - L1_Rod LINE L1 -96 5751 5504 4 1056 35458 46 0 3 chr12 61802738 61807922 -59449608 + L1Md_T LINE L1 338 5604 -282 4 1056 2404 53 18 18 chr12 61807922 61808249 -59449281 - IAPLTR2b LTR ERVK 0 327 1 4 1056 54776 27 12 11 chr12 61808251 61814711 -59442819 - IAPEz-int LTR ERVK -2 6479 9 4 1056 2357 65 18 18 chr12 61814712 61815039 -59442491 - IAPLTR2b LTR ERVK 0 327 1 4 1056 8329 35 0 0 chr12 61815039 61816026 -59441504 + L1Md_T LINE L1 5599 6585 0 4 1056 1772 338 85 22 chr12 61816032 61817321 -59440209 + Lx9 LINE L1 6275 7644 0 4 1056 500 258 101 35 chr12 61817456 61817625 -59439905 + MTE2b LTR MaLR 194 373 -6 4 1056 414 0 0 0 chr12 61817791 61817837 -59439693 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1056 583 219 54 24 chr12 61817842 61818010 -59439520 - Lx9 LINE L1 -179 7465 7293 5 1056 263 65 177 0 chr12 61817990 61818052 -59439478 + Lx2A1 LINE L1 6921 6993 -15 5 1056 270 81 0 0 chr12 61818052 61818089 -59439441 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5 1056 198 0 0 0 chr12 61818209 61818231 -59439299 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 5 1056 204 255 0 0 chr12 61818336 61818383 -59439147 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1056 237 173 19 0 chr12 61818874 61818926 -59438604 + T-rich Low_complexity Low_complexity 1 53 0 5 1056 1094 90 0 0 chr12 61818927 61819071 -59438459 - B1_Mus1 SINE Alu 0 148 5 5 1056 591 284 29 19 chr12 61819139 61819347 -59438183 + B3 SINE B2 1 210 -6 5 1056 33 43 0 0 chr12 61819504 61819551 -59437979 + AT_rich Low_complexity Low_complexity 1 47 0 5 1056 23 0 0 0 chr12 61820586 61820609 -59436921 + AT_rich Low_complexity Low_complexity 1 23 0 5 1056 216 67 0 0 chr12 61821554 61821584 -59435946 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1056 24 77 0 0 chr12 61822183 61822235 -59435295 + AT_rich Low_complexity Low_complexity 1 52 0 5 1056 522 354 50 31 chr12 61822253 61822455 -59435075 + MLT1A0 LTR MaLR 39 246 -119 5 1056 2992 64 21 0 chr12 61822455 61822832 -59434698 + IAPEY_LTR LTR ERVK 1 385 0 5 1056 522 354 50 31 chr12 61822832 61822950 -59434580 + MLT1A0 LTR MaLR 247 365 0 5 1056 27 29 0 0 chr12 61823529 61823563 -59433967 + AT_rich Low_complexity Low_complexity 1 34 0 5 1056 183 80 0 0 chr12 61823598 61823623 -59433907 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1056 477 220 168 0 chr12 61824352 61824543 -59432987 - Lx9 LINE L1 -8 7636 7414 5 1056 589 311 67 11 chr12 61824599 61824866 -59432664 + B4A SINE B4 4 285 -7 5 1056 1859 249 66 21 chr12 61824968 61825452 -59432078 + RMER5 LTR ERV1 29 534 0 5 1056 289 279 89 9 chr12 61825974 61826086 -59431444 + Lx3C LINE L1 6844 6964 -12 5 1056 4338 107 6 6 chr12 61826209 61826841 -59430689 - L1_Mus3 LINE L1 -1 6637 6006 5 1056 232 297 75 38 chr12 61827760 61827893 -59429637 + MLT1G3 LTR MaLR 416 553 -42 5 1056 24 0 0 0 chr12 61827930 61827954 -59429576 + AT_rich Low_complexity Low_complexity 1 24 0 5 1056 32 0 0 0 chr12 61827971 61828003 -59429527 + AT_rich Low_complexity Low_complexity 1 32 0 5 1056 508 240 187 16 chr12 61828309 61828491 -59429039 + B3 SINE B2 4 216 0 5 1056 671 110 0 10 chr12 61828619 61828720 -59428810 + RMER4B LTR ERVK 4 103 -363 5 1056 2548 140 121 19 chr12 61828724 61829204 -59428326 + RMER2 LTR ERV1 1 529 -38 5 1056 1621 226 50 73 chr12 61829219 61829331 -59428199 + RMER4B LTR ERVK 132 237 -348 5 1056 1330 87 16 5 chr12 61829331 61829516 -59428014 + B2_Mm2 SINE B2 2 188 -7 5 1056 1621 226 50 73 chr12 61829516 61829866 -59427664 + RMER4B LTR ERVK 238 583 -2 5 1056 339 25 0 0 chr12 61830159 61830199 -59427331 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 1056 1005 104 0 0 chr12 61830199 61830333 -59427197 - B1_Mm SINE Alu -13 134 1 5 1056 198 0 0 0 chr12 61830343 61830365 -59427165 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1056 10210 81 1 3 chr12 61831393 61833449 -59424081 + L1Md_F2 LINE L1 4507 6559 -23 5 1056 25 31 0 0 chr12 61834669 61834701 -59422829 + AT_rich Low_complexity Low_complexity 1 32 0 5 1056 24 53 0 0 chr12 61834964 61835002 -59422528 + AT_rich Low_complexity Low_complexity 1 38 0 5 1056 502 396 10 5 chr12 61835050 61835243 -59422287 + B4 SINE B4 31 224 -68 5 1056 413 257 0 0 chr12 61836484 61836589 -59420941 + U6 snRNA snRNA 1 105 -2 5 1056 845 215 28 39 chr12 61836942 61837121 -59420409 - RMER13A LTR ERVK -61 799 623 5 1056 596 276 92 25 chr12 61837316 61837718 -59419812 - L1M3 LINE L1 -2180 3960 3532 5 1056 380 111 16 0 chr12 61837804 61837867 -59419663 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1056 15862 18 1 1 chr12 61838131 61839988 -59417542 - L1_Mm LINE L1 -986 4897 3040 5 1056 4909 47 2 0 chr12 61839988 61840585 -59416945 + L1Md_T LINE L1 5982 6579 -3 5 1056 216 315 16 115 chr12 61840906 61841028 -59416502 + PB1D10 SINE Alu 1 110 -7 5 1056 190 289 19 37 chr12 61841888 61841942 -59415588 + MIR SINE MIR 41 93 -169 5 1056 26 30 0 0 chr12 61841973 61842006 -59415524 + AT_rich Low_complexity Low_complexity 1 33 0 5 1056 336 278 23 31 chr12 61842427 61842557 -59414973 + GA-rich Low_complexity Low_complexity 2 130 0 5 1056 9088 100 41 3 chr12 61842595 61844185 -59413345 - Lx3_Mus LINE L1 -1 7008 5363 5 1056 3923 75 21 87 chr12 61844955 61845566 -59411964 + L1_Mus2 LINE L1 5996 6566 0 5 1056 271 355 6 56 chr12 61846403 61846564 -59410966 + MER77 LTR ERVL 411 563 -44 5 1056 24 0 0 0 chr12 61847179 61847203 -59410327 + AT_rich Low_complexity Low_complexity 1 24 0 5 1056 280 320 19 74 chr12 61848335 61848497 -59409033 + Lx8 LINE L1 6989 7141 -332 5 1056 26 50 0 0 chr12 61848784 61848824 -59408706 + AT_rich Low_complexity Low_complexity 1 40 0 5 1056 501 309 23 46 chr12 61848861 61849078 -59408452 + Lx9 LINE L1 7041 7252 -392 5 1056 37 52 0 0 chr12 61849205 61849263 -59408267 + AT_rich Low_complexity Low_complexity 1 58 0 5 1056 436 336 148 3 chr12 61849744 61850028 -59407502 + Lx8 LINE L1 6882 7206 -267 5 1056 947 313 97 52 chr12 61850182 61850583 -59406947 - MTD LTR MaLR 0 419 1 5 1056 7987 53 10 3 chr12 61851084 61852486 -59405044 - L1Md_F2 LINE L1 -2 6580 5162 5 1056 33214 75 11 4 chr12 61852476 61855668 -59401862 - L1Md_F2 LINE L1 0 6582 3394 5 1056 2818 81 0 0 chr12 61855668 61856025 -59401505 + IAPEY2_LTR LTR ERVK 1 357 0 5 1056 33214 112 22 30 chr12 61856025 61859213 -59398317 - L1Md_F2 LINE L1 -2490 3393 238 5 1056 635 329 104 36 chr12 61859385 61860045 -59397485 + L1MCb LINE L1 100 804 -5241 5 1056 759 295 15 19 chr12 61860071 61860278 -59397252 + MTD LTR MaLR 38 262 -157 5 1056 5617 82 30 0 chr12 61860352 61861117 -59396413 - L1_Mus2 LINE L1 -4 6562 5775 5 1056 562 296 50 6 chr12 61861117 61861277 -59396253 + MTD LTR MaLR 253 419 0 5 1056 279 0 0 0 chr12 61861567 61861598 -59395932 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1056 864 304 38 22 chr12 61861752 61862037 -59395493 + B4A SINE B4 1 282 -10 5 1056 1656 249 67 44 chr12 61862038 61862514 -59395016 + Lx6 LINE L1 6407 6878 -582 5 1056 432 0 0 0 chr12 61862514 61862562 -59394968 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1056 1656 249 67 44 chr12 61862562 61862634 -59394896 + Lx6 LINE L1 6879 6968 -492 5 1056 568 29 0 0 chr12 61862795 61862864 -59394666 - L1Md_A LINE L1 -415 6167 6099 5 1056 439 324 85 14 chr12 61862932 61863073 -59394457 + B3A SINE B2 2 152 -46 5 1056 387 0 0 0 chr12 61863080 61863123 -59394407 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1056 27 81 0 0 chr12 61864248 61864310 -59393220 + AT_rich Low_complexity Low_complexity 1 62 0 5 1056 698 93 19 0 chr12 61865106 61865213 -59392317 + (GAAAA)n Simple_repeat Simple_repeat 2 110 0 5 1056 256 337 0 11 chr12 61865364 61865454 -59392076 + MER67D LTR ERV1 9 97 -417 5 1056 354 185 0 0 chr12 61865650 61865715 -59391815 + L1_Mur1 LINE L1 4468 4532 -1354 5 1057 312 48 0 0 chr12 61866206 61866248 -59391282 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1057 540 0 0 0 chr12 61866991 61867051 -59390479 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1057 297 0 0 0 chr12 61867051 61867083 -59390447 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1057 369 109 0 0 chr12 61867557 61867612 -59389918 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1057 932 26 9 0 chr12 61867612 61867727 -59389803 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 5 1057 403 350 88 0 chr12 61867860 61868020 -59389510 - B3 SINE B2 -10 206 33 5 1057 386 108 0 15 chr12 61868188 61868254 -59389276 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1057 180 0 0 0 chr12 61868254 61868274 -59389256 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 1057 233 282 50 22 chr12 61868375 61868556 -59388974 + L1M3de LINE L1 1732 1917 -4736 5 1057 243 0 0 0 chr12 61868595 61868622 -59388908 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 5 1057 224 212 15 29 chr12 61868626 61868694 -59388836 + (CAA)n Simple_repeat Simple_repeat 2 68 0 5 1057 26 0 0 0 chr12 61868830 61868856 -59388674 + AT_rich Low_complexity Low_complexity 1 26 0 5 1057 2124 77 18 43 chr12 61868915 61869242 -59388288 + L1_Mus3 LINE L1 6315 6633 -5 5 1057 642 359 33 45 chr12 61869243 61869880 -59387650 + L1M3de LINE L1 5099 5727 -1005 5 1057 1719 185 22 13 chr12 61870231 61870549 -59386981 - ORR1A4 LTR MaLR -8 321 1 5 1057 23 0 0 0 chr12 61870888 61870911 -59386619 + AT_rich Low_complexity Low_complexity 1 23 0 5 1057 21490 82 4 3 chr12 61870967 61873942 -59383588 - L1_Mm LINE L1 -436 5447 2470 5 1057 825 87 8 0 chr12 61873949 61874075 -59383455 - L1_Mus1 LINE L1 0 6567 6441 5 1057 1891 92 0 0 chr12 61874076 61874326 -59383204 + L1Md_F2 LINE L1 6193 6442 -140 5 1057 434 292 77 107 chr12 61874357 61874732 -59382798 - L1M2 LINE L1 -1603 4540 4177 5 1057 276 213 62 3 chr12 61874830 61874952 -59382578 - L1M2 LINE L1 -2144 3999 3866 5 1057 281 365 0 0 chr12 61874974 61875078 -59382452 + MTEa LTR MaLR 1 104 -275 5 1057 318 267 24 79 chr12 61875194 61875320 -59382210 - B4A SINE B4 -2 290 172 5 1057 2264 215 15 9 chr12 61875370 61875835 -59381695 - Lx4A LINE L1 -1 7057 6590 5 1057 5710 149 16 53 chr12 61875854 61877691 -59379839 + L1Md_F LINE L1 203 2029 -1788 5 1057 2983 47 62 0 chr12 61877691 61878078 -59379452 + IAPLTR2a LTR ERVK 1 411 0 5 1057 1000 111 25 100 chr12 61878079 61878279 -59379251 + IAPEz-int LTR ERVK 9 193 -6288 5 1057 245 309 0 0 chr12 61878279 61878334 -59379196 + RLTR27 LTR ERVK 221 275 -34 5 1057 4522 70 6 55 chr12 61878334 61878995 -59378535 + IAPEz-int LTR ERVK 168 796 -5685 5 1057 997 74 28 104 chr12 61878999 61879181 -59378349 + IAPLTR2_Mm LTR ERVK 308 475 0 5 1057 21980 142 16 7 chr12 61879181 61881487 -59376043 + L1_Mus2 LINE L1 2123 4428 -1455 5 1057 4786 37 0 0 chr12 61881487 61882086 -59375444 + L1Md_T LINE L1 6010 6582 0 5 1057 21980 142 16 7 chr12 61882086 61882384 -59375146 + L1_Mus2 LINE L1 4429 4729 -1154 5 1057 237 33 0 0 chr12 61882384 61882414 -59375116 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1057 21980 119 17 11 chr12 61882414 61884203 -59373327 + L1_Mus2 LINE L1 4730 6554 -12 5 1057 252 0 0 0 chr12 61884204 61884232 -59373298 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1057 1046 174 39 19 chr12 61884242 61884447 -59373083 - Lx4A LINE L1 -428 6630 6422 6 1057 2449 172 56 10 chr12 61884453 61884936 -59372594 + Lx4A LINE L1 5899 6403 -655 6 1057 303 261 108 29 chr12 61885023 61885264 -59372266 - L1M3 LINE L1 -2755 3388 3129 6 1057 642 116 14 7 chr12 61885354 61885493 -59372037 + (TA)n Simple_repeat Simple_repeat 1 140 0 6 1057 218 164 82 0 chr12 61885506 61885567 -59371963 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 6 1057 623 121 0 26 chr12 61885630 61885783 -59371747 + (TA)n Simple_repeat Simple_repeat 2 150 0 6 1057 806 165 191 0 chr12 61887068 61887256 -59370274 + URR1A DNA MER1_type 1 224 -2 6 1057 671 248 50 98 chr12 61887616 61887973 -59369557 - Lx7 LINE L1 -1 7695 7356 6 1057 326 241 0 37 chr12 61888050 61888132 -59369398 - Lx7 LINE L1 -361 7335 7257 6 1057 391 212 40 0 chr12 61888135 61888234 -59369296 - L1_Mur3 LINE L1 -1111 4769 4667 6 1057 1567 113 25 50 chr12 61888242 61888535 -59368995 - L1Md_F2 LINE L1 0 6582 6310 6 1057 265 215 0 25 chr12 61888535 61888601 -59368929 + T-rich Low_complexity Low_complexity 2 66 0 6 1057 1340 209 34 23 chr12 61888609 61888962 -59368568 - L1_Mur3 LINE L1 -1256 4624 4268 6 1057 1960 189 111 12 chr12 61888944 61889430 -59368100 - L1_Mur3 LINE L1 -1913 3967 3434 6 1057 2950 78 176 5 chr12 61889445 61889882 -59367648 - RLTR1B LTR ERV1 0 512 1 6 1057 213 139 0 0 chr12 61889906 61889949 -59367581 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1057 26 74 0 0 chr12 61890043 61890097 -59367433 + AT_rich Low_complexity Low_complexity 1 54 0 6 1057 1980 127 34 6 chr12 61890167 61890493 -59367037 + Lx2 LINE L1 6661 6995 -2 6 1057 301 298 105 14 chr12 61890494 61890637 -59366893 - MTEa LTR MaLR -42 337 182 6 1057 420 20 0 0 chr12 61890865 61890914 -59366616 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1057 961 295 31 42 chr12 61892424 61892806 -59364724 + Lx9 LINE L1 7031 7408 -236 6 1057 261 284 0 15 chr12 61894014 61894082 -59363448 - tRNA-Ala-GCA tRNA tRNA -8 67 1 6 1057 409 314 93 31 chr12 61894337 61894407 -59363123 + B4 SINE B4 2 77 -215 6 1057 180 0 0 0 chr12 61894407 61894427 -59363103 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1057 409 321 92 31 chr12 61894427 61894539 -59362991 + B4 SINE B4 78 193 -99 6 1057 25 51 0 0 chr12 61894754 61894793 -59362737 + AT_rich Low_complexity Low_complexity 1 39 0 6 1057 2598 152 44 81 chr12 61894794 61895359 -59362171 - Lx4A LINE L1 -1 7057 6514 6 1057 652 135 0 35 chr12 61895379 61895494 -59362036 - Lx4A LINE L1 -1194 5864 5754 6 1057 1126 89 7 0 chr12 61895556 61895702 -59361828 + B1_Mus2 SINE Alu 1 147 0 6 1057 279 111 100 100 chr12 61895988 61896031 -59361499 + L1_Mm LINE L1 5538 5586 -297 6 1057 8177 35 1 3 chr12 61896031 61897017 -59360513 + L1Md_F3 LINE L1 5587 6570 -14 6 1057 279 111 100 100 chr12 61897017 61897033 -59360497 + L1_Mm LINE L1 5587 5597 -286 6 1057 749 283 64 82 chr12 61897262 61897803 -59359727 + RLTR11A2 LTR ERVK 15 503 -25 6 1057 1038 166 11 1 chr12 61897806 61898020 -59359510 + L1_Mm LINE L1 4458 4674 -1212 6 1057 12422 172 25 63 chr12 61898011 61901746 -59355784 - L1VL2 LINE L1 -1706 4171 585 6 1057 223 320 48 31 chr12 61901936 61902061 -59355469 + PB1D7 SINE Alu 1 120 -7 6 1057 30 27 0 0 chr12 61903185 61903222 -59354308 + AT_rich Low_complexity Low_complexity 1 37 0 6 1057 1495 307 67 2 chr12 61903682 61904158 -59353372 - Lx6 LINE L1 -40 7420 6914 6 1057 240 111 0 0 chr12 61904310 61904346 -59353184 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1057 38 75 0 0 chr12 61904459 61904539 -59352991 + AT_rich Low_complexity Low_complexity 1 80 0 6 1057 3433 39 37 52 chr12 61904562 61905044 -59352486 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1057 225 0 0 0 chr12 61905153 61905178 -59352352 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1057 288 354 39 0 chr12 61905226 61905356 -59352174 - Lx7 LINE L1 -373 7323 7189 6 1057 281 300 59 79 chr12 61905511 61905663 -59351867 - B3 SINE B2 -1 215 67 6 1057 34 24 0 0 chr12 61906367 61906408 -59351122 + AT_rich Low_complexity Low_complexity 1 41 0 6 1057 23 0 0 0 chr12 61906723 61906746 -59350784 + AT_rich Low_complexity Low_complexity 1 23 0 6 1057 517 322 110 44 chr12 61907336 61907518 -59350012 + B3 SINE B2 2 195 -21 6 1057 1780 126 86 0 chr12 61907704 61908005 -59349525 - IAPEY3_LTR LTR ERVK -5 327 1 6 1057 389 309 114 6 chr12 61908615 61908781 -59348749 + MER57C2 LTR ERV1 109 292 -142 6 1057 31 26 0 0 chr12 61909284 61909322 -59348208 + AT_rich Low_complexity Low_complexity 1 38 0 6 1057 536 342 31 5 chr12 61909487 61909681 -59347849 - ID_B1 SINE B4 -2 222 24 6 1057 1691 189 221 17 chr12 61909685 61909926 -59347604 + RMER6D LTR ERVK 1 278 -442 6 1057 1119 90 0 0 chr12 61909926 61910071 -59347459 + B1_Mus2 SINE Alu 1 145 -2 6 1057 1691 189 221 17 chr12 61910071 61910296 -59347234 + RMER6D LTR ERVK 279 562 -158 6 1057 739 249 11 6 chr12 61910296 61910470 -59347060 + MurERV4-int LTR ERVK 1616 1790 -1387 6 1057 2286 251 24 21 chr12 61910536 61911115 -59346415 + MurERV4-int LTR ERVK 2646 3226 -2034 6 1057 240 254 0 0 chr12 61911115 61911170 -59346360 + RMER6D LTR ERVK 665 719 -1 6 1057 1877 221 26 26 chr12 61911377 61911796 -59345734 - MTC LTR MaLR -2 419 1 6 1057 923 278 178 23 chr12 61911933 61912338 -59345192 - Lx8 LINE L1 -613 6860 6393 6 1057 648 217 169 11 chr12 61912352 61912529 -59345001 + MT2A LTR ERVL 1 205 -328 6 1057 570 298 0 18 chr12 61912603 61912774 -59344756 - Lx6 LINE L1 -71 7389 7222 6 1057 931 284 35 28 chr12 61912786 61913072 -59344458 - Lx6 LINE L1 -875 6585 6298 6 1057 292 48 48 0 chr12 61913068 61913126 -59344404 + L1_Mus2 LINE L1 6517 6581 -1 6 1057 21 57 0 0 chr12 61913706 61913741 -59343789 + AT_rich Low_complexity Low_complexity 1 35 0 6 1057 291 317 29 0 chr12 61913877 61913981 -59343549 + PB1D10 SINE Alu 4 110 -7 6 1057 369 0 0 0 chr12 61915429 61915470 -59342060 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1057 1713 226 186 33 chr12 61917367 61918147 -59339383 - RMER6C LTR ERVK -4 716 3 6 1057 2209 75 96 29 chr12 61918646 61918989 -59338541 - MTB LTR MaLR -34 366 1 6 1057 542 272 130 5 chr12 61919020 61919205 -59338325 - B3 SINE B2 -7 209 2 6 1057 3016 132 67 6 chr12 61919305 61919810 -59337720 + Lx3B LINE L1 6437 6972 -1 6 1057 192 40 0 0 chr12 61919813 61919838 -59337692 + (TAA)n Simple_repeat Simple_repeat 1 25 0 6 1057 23 33 0 0 chr12 61920382 61920412 -59337118 + AT_rich Low_complexity Low_complexity 1 30 0 6 1057 268 217 127 25 chr12 61920763 61920881 -59336649 - Lx4B LINE L1 -17 7041 6912 6 1057 458 137 0 14 chr12 61920926 61921000 -59336530 - Lx4B LINE L1 -339 6719 6647 6 1057 1673 193 77 3 chr12 61920999 61921172 -59336358 + Lx4B LINE L1 5986 6158 -900 6 1057 474 49 0 0 chr12 61921172 61921233 -59336297 + (TGG)n Simple_repeat Simple_repeat 3 63 0 6 1057 1673 193 77 3 chr12 61921233 61921408 -59336122 + Lx4B LINE L1 6159 6360 -698 6 1057 23 33 0 0 chr12 61921452 61921482 -59336048 + AT_rich Low_complexity Low_complexity 1 30 0 6 1057 441 295 48 68 chr12 61921489 61921696 -59335834 + B3 SINE B2 7 209 -7 6 1057 22 70 0 0 chr12 61922445 61922488 -59335042 + AT_rich Low_complexity Low_complexity 1 43 0 6 1057 411 21 0 0 chr12 61923012 61923060 -59334470 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1057 314 217 17 0 chr12 61924137 61924197 -59333333 + MER68-int LTR ERVL 2682 2742 -248 6 1057 281 325 8 0 chr12 61924358 61924478 -59333052 + HERVL40-int LTR ERVL 5327 5447 -83 6 1057 222 91 0 0 chr12 61924585 61924618 -59332912 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 6 1057 419 412 42 15 chr12 61924724 61925021 -59332509 + LTR40a LTR ERVL 124 429 -90 6 1057 194 0 39 0 chr12 61925021 61925047 -59332483 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 6 1057 419 412 42 15 chr12 61925047 61925084 -59332446 + LTR40a LTR ERVL 430 466 -53 6 1057 564 250 50 0 chr12 61926620 61926780 -59330750 - L1_Rod LINE L1 0 5847 5680 6 1057 532 361 79 52 chr12 61926778 61927107 -59330423 + Lx9 LINE L1 5839 6176 -1297 6 1057 480 35 0 0 chr12 61927107 61927165 -59330365 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1057 574 361 79 52 chr12 61927165 61927510 -59330020 + Lx9 LINE L1 6177 6677 -967 6 1057 1094 101 17 11 chr12 61927711 61927892 -59329638 - L1_Mus3 LINE L1 0 6638 6457 6 1057 5763 95 41 3 chr12 61927895 61929128 -59328402 + L1_Mus3 LINE L1 5176 6451 -187 6 1057 932 325 53 70 chr12 61929126 61929696 -59327834 + Lx9 LINE L1 6752 7311 -333 6 1057 560 27 14 0 chr12 61929772 61929846 -59327684 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 1057 333 0 0 0 chr12 61929913 61929950 -59327580 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1057 315 0 0 0 chr12 61929952 61929987 -59327543 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1057 5933 143 32 15 chr12 61930155 61930287 -59327243 - Lx2 LINE L1 -1 6996 6858 6 1057 856 201 122 144 chr12 61930287 61930376 -59327154 - RLTR9C LTR ERVK 0 393 310 6 1057 507 17 0 0 chr12 61930376 61930436 -59327094 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1057 856 201 122 144 chr12 61930436 61930748 -59326782 - RLTR9C LTR ERVK -84 309 3 6 1057 5933 143 32 15 chr12 61930748 61931631 -59325899 - Lx2 LINE L1 -140 6857 5963 6 1057 43 35 0 0 chr12 61931779 61931836 -59325694 + AT_rich Low_complexity Low_complexity 1 57 0 6 1057 708 45 0 0 chr12 61931901 61931989 -59325541 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 1057 664 198 141 0 chr12 61931993 61932185 -59325345 - Lx9 LINE L1 -34 7610 7392 6 1057 325 207 54 139 chr12 61933419 61933430 -59324100 - MT2B LTR ERVL -328 273 220 6 1057 477 269 9 37 chr12 61933430 61933538 -59323992 - B1_Mur1 SINE Alu -41 108 4 6 1057 1476 216 75 112 chr12 61933938 61934174 -59323356 - MTC LTR MaLR 0 421 202 6 1057 957 101 0 0 chr12 61934174 61934313 -59323217 + (TTCC)n Simple_repeat Simple_repeat 3 141 0 6 1057 3989 154 49 14 chr12 61934313 61935006 -59322524 - Lx2 LINE L1 -9 6988 6272 6 1057 1476 216 75 112 chr12 61935006 61935031 -59322499 - MTC LTR MaLR -220 201 197 6 1057 5206 39 0 0 chr12 61935031 61935651 -59321879 - L1Md_T LINE L1 0 6582 5963 6 1057 1476 216 75 112 chr12 61935651 61935824 -59321706 - MTC LTR MaLR -225 196 3 6 1057 2725 191 11 4 chr12 61936205 61936729 -59320801 + RLTR12B LTR ERVK 1 528 0 6 1057 459 293 82 16 chr12 61936755 61936939 -59320591 - Lx6 LINE L1 -1301 6159 5964 6 1057 361 260 0 0 chr12 61936931 61937027 -59320503 - Lx5 LINE L1 -1094 5956 5861 6 1057 2816 85 50 5 chr12 61937653 61938057 -59319473 - BGLII_Mus LTR ERVK 0 422 1 6 1057 798 240 114 61 chr12 61938745 61939105 -59318425 - Lx9 LINE L1 -56 7588 7210 6 1057 1229 203 103 3 chr12 61939099 61939390 -59318140 + Lx9 LINE L1 6900 7219 -425 6 1057 785 293 97 40 chr12 61939422 61939802 -59317728 - Lx8 LINE L1 -629 6844 6443 6 1057 401 291 28 0 chr12 61939806 61939947 -59317583 + L1_Rod LINE L1 5674 5818 -29 7 1057 3121 298 67 26 chr12 61939983 61941353 -59316177 - Lx5 LINE L1 -347 5533 4106 6 1057 2180 82 7 10 chr12 61941353 61941660 -59315870 + L1Md_F2 LINE L1 6275 6580 -2 7 1057 3121 298 67 26 chr12 61941660 61942024 -59315506 - Lx5 LINE L1 -1775 4105 3729 6 1057 60 0 0 0 chr12 61942170 61942230 -59315300 + AT_rich Low_complexity Low_complexity 1 60 0 7 1057 482 342 22 0 chr12 61942254 61942438 -59315092 + Lx8 LINE L1 6236 6423 -1050 7 1057 243 88 0 0 chr12 61942582 61942616 -59314914 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 1057 15343 181 124 22 chr12 61943242 61946414 -59311116 + L1_Mus3 LINE L1 422 4037 -1846 7 1057 186 43 0 0 chr12 61946414 61946437 -59311093 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1057 15343 160 94 17 chr12 61946437 61948930 -59308600 + L1_Mus3 LINE L1 4038 6626 -12 7 1057 345 393 17 56 chr12 61949064 61949242 -59308288 - B3A SINE B2 -15 183 13 7 1057 3836 116 12 12 chr12 61949419 61950020 -59307510 - Lx3A LINE L1 -4 6977 6377 7 1057 632 60 12 0 chr12 61950020 61950104 -59307426 - Lx3_Mus LINE L1 -1134 5875 5791 7 1057 5424 76 20 7 chr12 61950081 61950833 -59306697 + Lx3_Mus LINE L1 5062 5823 -63 7 1057 740 104 51 22 chr12 61951186 61951323 -59306207 - Lx LINE L1 -2 6652 6512 7 1057 437 312 144 43 chr12 61951524 61951946 -59305584 + RMER5 LTR ERV1 33 497 -37 7 1057 375 375 27 14 chr12 61952935 61953081 -59304449 + RSINE1 SINE B4 18 165 0 7 1057 380 207 76 100 chr12 61953094 61953307 -59304223 + L1MB7 LINE L1 5685 5892 -286 7 1057 658 330 0 25 chr12 61953310 61953509 -59304021 + B3A SINE B2 3 196 -2 7 1057 534 133 0 0 chr12 61953516 61953629 -59303901 + (GA)n Simple_repeat Simple_repeat 2 114 0 7 1057 447 323 40 5 chr12 61953659 61953861 -59303669 + L1MB7 LINE L1 5891 6099 -85 7 1057 1434 245 39 5 chr12 61953863 61954296 -59303234 + Lx6 LINE L1 5501 5948 -1512 7 1057 369 0 0 0 chr12 61954594 61954635 -59302895 + (TTA)n Simple_repeat Simple_repeat 1 41 0 7 1057 955 285 74 3 chr12 61955005 61955304 -59302226 + Lx6 LINE L1 7138 7457 -3 7 1057 1054 95 5 19 chr12 61955560 61955776 -59301754 + (TTTC)n Simple_repeat Simple_repeat 1 212 0 7 1057 591 15 0 0 chr12 61956544 61956612 -59300918 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1057 275 302 18 92 chr12 61956627 61956791 -59300739 + Lx7 LINE L1 7127 7278 -418 7 1057 327 19 19 37 chr12 61956856 61956910 -59300620 + (TTTTG)n Simple_repeat Simple_repeat 5 57 0 7 1057 912 147 0 0 chr12 61956910 61957056 -59300474 - B1_Mus1 SINE Alu 0 148 13 7 1057 573 28 0 0 chr12 61957063 61957134 -59300396 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1057 1124 102 0 0 chr12 61957147 61957294 -59300236 - B1_Mm SINE Alu 0 147 1 7 1057 21299 43 15 1 chr12 61957303 61960638 -59296892 - L1Md_F2 LINE L1 -1 6581 3203 7 1057 314 387 38 16 chr12 61961123 61961307 -59296223 - L3 LINE CR1 -903 3586 3399 7 1057 539 328 23 34 chr12 61961532 61961709 -59295821 - B3A SINE B2 -15 183 9 7 1057 24 53 0 0 chr12 61961933 61961971 -59295559 + AT_rich Low_complexity Low_complexity 1 38 0 7 1057 320 395 8 0 chr12 61962115 61962234 -59295296 - PB1 SINE Alu -7 120 1 7 1057 188 385 123 24 chr12 61963560 61964065 -59293465 - L2 LINE L2 -1781 1638 1084 7 1057 4761 144 65 1 chr12 61964400 61965187 -59292343 - L1VL4 LINE L1 -5331 971 135 7 1057 2680 284 84 51 chr12 61965237 61966261 -59291269 - MTC-int LTR MaLR -5 1253 230 7 1057 617 0 14 0 chr12 61966261 61966334 -59291196 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 7 1057 2680 284 84 51 chr12 61966334 61966445 -59291085 - MTC-int LTR MaLR -1029 229 82 7 1057 1305 316 17 10 chr12 61966486 61966902 -59290628 - MTD LTR MaLR 0 419 1 7 1057 1094 96 0 0 chr12 61967066 61967212 -59290318 - B1_Mus2 SINE Alu 0 147 2 7 1057 2525 216 2 75 chr12 61968591 61968993 -59288537 - RMER15 LTR ERVL 0 575 178 7 1057 2893 41 3 0 chr12 61968993 61969338 -59288192 - ORR1A1 LTR MaLR 0 346 1 7 1057 2525 216 2 75 chr12 61969338 61969524 -59288006 - RMER15 LTR ERVL -398 177 30 7 1057 336 279 64 58 chr12 61969928 61970084 -59287446 + MamRep434 DNA TcMar 214 370 -56 7 1057 246 81 0 0 chr12 61970119 61970156 -59287374 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 7 1057 1123 75 0 7 chr12 61970156 61970304 -59287226 - B1_Mm SINE Alu 0 147 1 7 1057 546 350 128 27 chr12 61970390 61970953 -59286577 - Lx8 LINE L1 -132 7341 6722 7 1057 366 42 0 0 chr12 61971032 61971080 -59286450 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1057 215 133 22 0 chr12 61971110 61971155 -59286375 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 7 1057 817 233 5 11 chr12 61971302 61971493 -59286037 - RLTR28 LTR ERVL 0 524 335 7 1057 6028 152 52 3 chr12 61972016 61973025 -59284505 - Lx LINE L1 0 6654 5596 7 1057 21 71 0 0 chr12 61973496 61973538 -59283992 + AT_rich Low_complexity Low_complexity 1 42 0 7 1057 630 289 14 34 chr12 61973544 61973752 -59283778 + B3 SINE B2 2 205 -11 7 1057 33 43 0 0 chr12 61973968 61974015 -59283515 + AT_rich Low_complexity Low_complexity 1 47 0 7 1057 533 273 48 39 chr12 61974282 61974511 -59283019 + RLTR15 LTR ERVK 1 231 -128 7 1057 350 321 18 28 chr12 61974854 61974963 -59282567 - PB1D10 SINE Alu -1 116 9 7 1057 371 33 98 22 chr12 61975215 61975307 -59282223 + T-rich Low_complexity Low_complexity 2 100 0 7 1057 38 22 0 0 chr12 61976519 61976564 -59280966 + AT_rich Low_complexity Low_complexity 1 45 0 7 1057 210 160 0 0 chr12 61976638 61976688 -59280842 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1057 323 368 32 0 chr12 61977188 61977313 -59280217 - MLT1F LTR MaLR -34 535 407 7 1057 328 370 43 0 chr12 61977366 61977504 -59280026 - MLT1F LTR MaLR -320 228 85 7 1057 355 330 79 25 chr12 61977564 61977841 -59279689 - Lx9 LINE L1 -131 7513 7222 7 1057 45 69 0 0 chr12 61979043 61979130 -59278400 + AT_rich Low_complexity Low_complexity 1 87 0 7 1057 4798 144 83 10 chr12 61979130 61980021 -59277509 - Lx3C LINE L1 -1 6975 6020 7 1057 417 76 8 0 chr12 61980058 61980127 -59277403 - L1_Mus2 LINE L1 -1 6583 6510 7 1057 4253 164 49 11 chr12 61980127 61980908 -59276622 - Lx4A LINE L1 -10 7048 6239 7 1057 1471 289 61 45 chr12 61981759 61982340 -59275190 - L1MA6 LINE L1 -10 6290 5705 7 1057 678 130 0 0 chr12 61982340 61982448 -59275082 + (TA)n Simple_repeat Simple_repeat 2 109 0 7 1057 1471 289 61 45 chr12 61982448 61982811 -59274719 - L1MA6 LINE L1 -596 5704 5331 7 1057 228 111 0 0 chr12 61982818 61982854 -59274676 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1057 670 297 58 35 chr12 61982889 61983284 -59274246 - L1MA6 LINE L1 -882 5261 4858 7 1057 4672 164 52 3 chr12 61983667 61984534 -59272996 - Lx2B LINE L1 -3 6997 6089 7 1057 497 353 48 50 chr12 61985052 61985380 -59272150 - ORR1E LTR MaLR -2 368 48 7 1057 2467 291 61 80 chr12 61985382 61985595 -59271935 - MTC-int LTR MaLR -7 1251 1048 7 1057 180 53 79 0 chr12 61985595 61985633 -59271897 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1057 2467 291 61 80 chr12 61985633 61986540 -59270990 - MTC-int LTR MaLR -211 1047 152 7 1057 2859 38 0 90 chr12 61986540 61986941 -59270589 + RLTR10B2 LTR ERVK 1 365 0 7 1057 2467 291 61 80 chr12 61986941 61987056 -59270474 - MTC-int LTR MaLR -1107 151 38 7 1057 677 319 107 102 chr12 61987092 61987338 -59270192 - MTD LTR MaLR -21 398 139 7 1057 3715 112 45 16 chr12 61987338 61987920 -59269610 + Lx3_Mus LINE L1 6411 7009 0 7 1057 677 319 107 102 chr12 61987920 61988064 -59269466 - MTD LTR MaLR -281 138 6 7 1057 1544 214 123 33 chr12 61988072 61988527 -59269003 - Lx LINE L1 -5 6649 6154 7 1057 463 320 0 0 chr12 61988900 61989003 -59268527 - B1F1 SINE Alu -46 103 1 7 1057 21 0 0 0 chr12 61989133 61989154 -59268376 + AT_rich Low_complexity Low_complexity 1 21 0 7 1057 359 316 80 13 chr12 61989257 61989408 -59268122 - MER5A DNA MER1_type -26 163 3 7 1057 574 362 0 0 chr12 61989549 61989723 -59267807 + B3A SINE B2 7 180 -18 7 1057 350 317 57 41 chr12 61989776 61989983 -59267547 + B4A SINE B4 82 290 -2 7 1057 219 321 32 114 chr12 61990498 61990621 -59266909 - PB1D7 SINE Alu -7 113 1 7 1057 838 219 66 10 chr12 61991387 61991585 -59265945 + MTD LTR MaLR 1 209 -210 7 1057 2008 293 139 84 chr12 61991553 61991812 -59265718 + ORR1D1-int LTR MaLR 238 491 -1018 7 1057 1407 70 41 23 chr12 61991812 61992033 -59265497 + L1_Mus2 LINE L1 6341 6565 -1 7 1057 2008 293 139 84 chr12 61992033 61992119 -59265411 + ORR1D1-int LTR MaLR 492 527 -982 7 1057 1448 92 14 5 chr12 61992119 61992337 -59265193 + L1_Mus3 LINE L1 6410 6629 -9 7 1057 2904 282 8 26 chr12 61992337 61993111 -59264419 + ORR1D1-int LTR MaLR 528 1420 -89 7 1057 651 26 0 0 chr12 61993232 61993309 -59264221 + (CA)n Simple_repeat Simple_repeat 1 77 0 7 1057 1568 170 69 79 chr12 61993378 61993756 -59263774 + ORR1D1 LTR MaLR 1 374 0 7 1057 244 256 85 39 chr12 61995737 61995867 -59261663 + MLT1N2 LTR MaLR 367 502 -60 7 1057 21 0 0 0 chr12 61996384 61996405 -59261125 + AT_rich Low_complexity Low_complexity 1 21 0 7 1058 3343 265 118 26 chr12 61997101 61997767 -59259763 + Lx6 LINE L1 6251 6988 -472 7 1058 1322 222 100 50 chr12 61997767 61998188 -59259342 - RMER10A LTR ERVL 0 442 1 7 1058 3343 265 118 26 chr12 61998188 61998619 -59258911 + Lx6 LINE L1 6989 7449 -11 7 1058 387 357 44 48 chr12 61999089 61999360 -59258170 - L1M4b LINE L1 -6954 380 111 7 1058 376 287 176 11 chr12 61999416 61999592 -59257938 - B3 SINE B2 -10 206 2 7 1058 624 161 153 0 chr12 61999618 61999742 -59257788 + RLTR12B LTR ERVK 1 143 -385 7 1058 1534 155 19 0 chr12 61999742 62000000 -59257530 - L1_Mus4 LINE L1 -500 6136 5874 7 1058 15467 166 18 92 chr12 62000000 62002506 -59255024 - L1VL4 LINE L1 -10 5873 3527 1 1058 2316 131 23 11 chr12 62002506 62002893 -59254637 + RMER17D2 LTR ERVK 1 418 -333 2 1058 576 42 0 0 chr12 62002893 62002964 -59254566 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1058 1644 152 182 21 chr12 62002964 62003248 -59254282 + RMER17A LTR ERVK 419 809 0 4 1058 15467 177 8 140 chr12 62003248 62006114 -59251416 - L1VL4 LINE L1 -2351 3535 718 1 1058 5485 140 13 13 chr12 62006586 62007492 -59250038 - Lx3A LINE L1 -10 6971 6066 5 1058 245 105 33 44 chr12 62007550 62007640 -59249890 + T-rich Low_complexity Low_complexity 2 90 0 6 1058 1156 278 30 15 chr12 62007664 62008000 -59249530 - Lx5 LINE L1 -8 7042 6702 7 1058 294 179 0 0 chr12 62008039 62008095 -59249435 + CT-rich Low_complexity Low_complexity 2 57 0 8 1058 1508 0 0 6 chr12 62008099 62008272 -59249258 + (TTC)n Simple_repeat Simple_repeat 3 174 0 9 1058 203 267 0 0 chr12 62008273 62008318 -59249212 + CT-rich Low_complexity Low_complexity 1 45 0 1 1058 22 0 0 0 chr12 62009895 62009917 -59247613 + AT_rich Low_complexity Low_complexity 1 22 0 1 1058 582 304 116 19 chr12 62010248 62010670 -59246860 - Lx9 LINE L1 -97 7547 7085 1 1058 1784 174 17 11 chr12 62010713 62011068 -59246462 + Lx2B LINE L1 2294 2650 -3236 1 1058 927 115 0 28 chr12 62011070 62011213 -59246317 + B1_Mm SINE Alu 9 147 0 1 1058 986 182 20 0 chr12 62011230 62011428 -59246102 + MusHAL1 LINE L1 1436 1637 -1075 1 1058 9065 122 10 9 chr12 62011449 62013612 -59243918 - L1Md_F2 LINE L1 -2 6565 4399 1 1058 15196 74 9 19 chr12 62013599 62016556 -59240974 - L1Md_F2 LINE L1 0 6582 3656 1 1058 3259 118 0 16 chr12 62016548 62017063 -59240467 + L1Md_F2 LINE L1 3102 3608 -2275 1 1058 219 69 0 0 chr12 62017081 62017110 -59240420 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1058 291 169 0 15 chr12 62017110 62017176 -59240354 + L1_Mm LINE L1 3605 3669 -2214 1 1058 12902 184 38 76 chr12 62017166 62018577 -59238953 + Lx2B LINE L1 2829 4240 -1637 1 1058 971 105 0 7 chr12 62018577 62018721 -59238809 - B1_Mus1 SINE Alu 0 148 6 1 1058 12902 184 38 76 chr12 62018721 62019073 -59238457 + Lx2B LINE L1 4241 4594 -1283 1 1058 3478 36 0 0 chr12 62019073 62019489 -59238041 - L1Md_A LINE L1 0 6582 6167 1 1058 12902 176 33 39 chr12 62019489 62021733 -59235797 + Lx2B LINE L1 4595 6888 -112 1 1058 343 384 22 57 chr12 62021759 62021988 -59235542 + B4 SINE B4 72 292 0 2 1058 250 169 0 58 chr12 62022892 62022961 -59234569 - Lx4A LINE L1 -2 7056 6992 2 1058 1175 283 74 13 chr12 62023033 62023413 -59234117 + MTC LTR MaLR 18 420 -1 2 1058 265 210 0 0 chr12 62024587 62024649 -59232881 - Lx9 LINE L1 -9 7635 7574 2 1058 1089 110 0 0 chr12 62024654 62024817 -59232713 + (CA)n Simple_repeat Simple_repeat 1 163 0 2 1058 298 0 48 0 chr12 62024838 62024880 -59232650 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 1058 1118 82 0 7 chr12 62024880 62025019 -59232511 - B1_Mus1 SINE Alu -8 140 2 2 1058 2054 244 29 10 chr12 62025064 62025581 -59231949 - Lx9 LINE L1 -183 7461 6935 2 1058 5637 54 6 1 chr12 62025577 62026299 -59231231 - L1_Mm LINE L1 -894 4989 4265 2 1058 3494 39 0 39 chr12 62026299 62026772 -59230758 + L1Md_F3 LINE L1 6137 6584 0 2 1058 3494 39 0 39 chr12 62026772 62026788 -59230742 + L1Md_F3 LINE L1 6560 6574 -10 2 1058 948 272 209 37 chr12 62026827 62027751 -59229779 - Lx9 LINE L1 -1297 6176 5072 2 1058 302 300 40 75 chr12 62027751 62027924 -59229606 + U2 snRNA snRNA 1 167 -21 2 1058 835 272 59 53 chr12 62027934 62028423 -59229107 - Lx9 LINE L1 -1214 4633 4142 2 1058 24 0 0 0 chr12 62028443 62028467 -59229063 + AT_rich Low_complexity Low_complexity 1 24 0 3 1058 3073 195 34 18 chr12 62028467 62029078 -59228452 - Lx4B LINE L1 -5 7053 6433 3 1058 1121 220 9 0 chr12 62029083 62029315 -59228215 + Lx4B LINE L1 6206 6439 -619 3 1058 1173 249 118 51 chr12 62029307 62029462 -59228068 - Lx9 LINE L1 -1698 4149 3982 2 1058 447 19 0 0 chr12 62029462 62029514 -59228016 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1058 234 0 0 0 chr12 62029514 62029539 -59227991 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1058 1173 249 118 51 chr12 62029539 62029891 -59227639 - Lx9 LINE L1 -1866 3981 3608 2 1058 414 0 0 0 chr12 62030231 62030277 -59227253 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1058 341 369 105 16 chr12 62030364 62030554 -59226976 - Tigger5 DNA MER2_type -2171 235 29 3 1058 827 292 40 31 chr12 62030921 62031210 -59226320 + L1_Rod LINE L1 4634 4922 -925 3 1058 390 129 0 0 chr12 62031210 62031272 -59226258 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1058 827 292 40 31 chr12 62031272 62031460 -59226070 + L1_Rod LINE L1 4923 5115 -732 3 1058 37 93 0 0 chr12 62031533 62031640 -59225890 + AT_rich Low_complexity Low_complexity 1 107 0 3 1058 183 80 0 0 chr12 62031795 62031820 -59225710 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 3 1058 32 26 0 0 chr12 62032016 62032055 -59225475 + AT_rich Low_complexity Low_complexity 1 39 0 4 1058 198 0 0 0 chr12 62033340 62033362 -59224168 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1058 33 73 0 0 chr12 62033864 62033932 -59223598 + AT_rich Low_complexity Low_complexity 1 68 0 4 1058 352 324 73 10 chr12 62034265 62034471 -59223059 - Lx7 LINE L1 -1781 5915 5697 4 1058 458 108 0 13 chr12 62034684 62034759 -59222771 + (TA)n Simple_repeat Simple_repeat 1 74 0 4 1058 29 0 0 0 chr12 62034779 62034808 -59222722 + AT_rich Low_complexity Low_complexity 1 29 0 4 1058 372 344 110 60 chr12 62035396 62035531 -59221999 - L1MC1 LINE L1 -42 6291 6148 4 1058 3389 138 18 23 chr12 62035531 62036100 -59221430 - Lx3A LINE L1 -8 6973 6408 4 1058 372 344 110 60 chr12 62036100 62036381 -59221149 - L1MC1 LINE L1 -186 6147 5854 4 1058 379 274 169 0 chr12 62036605 62036729 -59220801 + B1_Mm SINE Alu 3 147 0 4 1058 520 237 77 37 chr12 62036720 62036818 -59220712 + MTD LTR MaLR 181 291 -128 4 1058 1320 203 63 76 chr12 62036818 62037201 -59220329 + ORR1C1 LTR MaLR 1 378 0 5 1058 520 211 82 45 chr12 62037201 62037261 -59220269 + MTD LTR MaLR 292 359 -60 4 1058 405 0 0 0 chr12 62037716 62037761 -59219769 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1058 6173 157 17 11 chr12 62037761 62039040 -59218490 - Lx LINE L1 -11 6643 5357 5 1058 6919 126 3 7 chr12 62039038 62040143 -59217387 - L1_Mus4 LINE L1 -2 6634 5536 5 1058 2126 90 25 22 chr12 62040135 62040497 -59217033 - MusHAL1 LINE L1 -555 2157 1795 5 1058 2026 274 93 3 chr12 62041813 62042380 -59215150 - Lx5 LINE L1 -5 7045 6428 5 1058 2370 235 20 26 chr12 62042366 62043163 -59214367 - Lx5 LINE L1 -834 6216 5410 5 1058 1179 209 64 5 chr12 62043237 62043543 -59213987 - Lx5 LINE L1 -1438 4708 4341 5 1058 1049 213 44 98 chr12 62043546 62043843 -59213687 + RMER6D LTR ERVK 432 712 -8 5 1058 543 117 0 0 chr12 62044330 62044424 -59213106 + (CA)n Simple_repeat Simple_repeat 2 95 0 5 1058 493 337 34 81 chr12 62044563 62044860 -59212670 + RLTR18 LTR ERVK 23 305 -311 5 1058 548 340 30 19 chr12 62044890 62045160 -59212370 + RLTR18B LTR ERVK 190 462 -50 5 1058 4786 135 45 9 chr12 62045356 62046140 -59211390 + Lx2 LINE L1 6186 6997 0 6 1058 773 295 40 27 chr12 62046162 62046385 -59211145 + MTC LTR MaLR 196 421 0 6 1058 495 0 0 0 chr12 62046898 62046953 -59210577 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1058 312 27 0 0 chr12 62046953 62046989 -59210541 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1058 261 271 55 27 chr12 62047140 62047250 -59210280 + PB1D9 SINE Alu 7 119 -1 6 1058 32 67 0 0 chr12 62047690 62047750 -59209780 + AT_rich Low_complexity Low_complexity 1 60 0 6 1058 1088 193 24 5 chr12 62048178 62048391 -59209139 - MTB LTR MaLR 0 400 184 6 1058 279 307 43 119 chr12 62048737 62048922 -59208608 + MLT1D LTR MaLR 335 505 0 6 1058 325 268 30 20 chr12 62049039 62049138 -59208392 - Lx9 LINE L1 -307 7337 7238 6 1058 948 261 20 3 chr12 62049137 62049429 -59208101 + L1_Rod LINE L1 2111 2407 -3440 6 1058 1326 268 46 63 chr12 62049447 62049812 -59207718 + L1_Rod LINE L1 2704 3067 -2780 6 1058 857 10 10 0 chr12 62049812 62049914 -59207616 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 7 1058 1326 268 46 63 chr12 62049914 62050198 -59207332 + L1_Rod LINE L1 3068 3342 -2505 6 1058 615 170 93 29 chr12 62050200 62050339 -59207191 - Lx3C LINE L1 -52 6924 6777 7 1058 26 64 0 0 chr12 62050365 62050412 -59207118 + AT_rich Low_complexity Low_complexity 1 47 0 7 1058 528 336 72 20 chr12 62050549 62051038 -59206492 - L1M2 LINE L1 -2138 4005 3492 7 1058 337 290 24 0 chr12 62051122 62051246 -59206284 + L1MA7 LINE L1 4457 4583 -1560 7 1058 447 52 0 0 chr12 62051338 62051396 -59206134 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1058 359 287 28 65 chr12 62051473 62051581 -59205949 + PB1D10 SINE Alu 13 116 -1 7 1058 396 338 54 18 chr12 62051619 62051842 -59205688 + L1MA7 LINE L1 4755 4985 -1158 7 1058 504 59 0 0 chr12 62051909 62051977 -59205553 + (TC)n Simple_repeat Simple_repeat 1 68 0 7 1058 457 316 127 36 chr12 62051980 62052367 -59205163 + L1MA7 LINE L1 4970 5391 -752 7 1058 1700 216 37 126 chr12 62052524 62053145 -59204385 + Lx7 LINE L1 7131 7696 0 7 1058 240 154 0 0 chr12 62053190 62053242 -59204288 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1058 583 302 87 27 chr12 62053489 62053856 -59203674 + L1MA7 LINE L1 5876 6264 -27 7 1058 231 279 62 41 chr12 62054092 62054189 -59203341 + PB1D9 SINE Alu 13 111 -9 8 1058 27 73 0 0 chr12 62054724 62054779 -59202751 + AT_rich Low_complexity Low_complexity 1 55 0 8 1058 604 305 82 31 chr12 62055126 62055481 -59202049 - Lx7 LINE L1 -282 7414 7042 8 1058 6536 110 13 3 chr12 62056225 62057204 -59200326 - Lx3_Mus LINE L1 0 7009 6021 8 1058 2442 127 10 2 chr12 62057207 62057596 -59199934 + Lx3A LINE L1 5587 6021 -279 8 1058 457 58 0 28 chr12 62057602 62057673 -59199857 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 8 1058 765 109 0 0 chr12 62057673 62057792 -59199738 + Lx3_Mus LINE L1 5908 6026 -983 8 1058 35 41 0 0 chr12 62057869 62057918 -59199612 + AT_rich Low_complexity Low_complexity 1 49 0 8 1058 275 212 0 12 chr12 62057925 62058006 -59199524 + (TA)n Simple_repeat Simple_repeat 2 81 0 8 1058 299 370 0 0 chr12 62058042 62058142 -59199388 - B3A SINE B2 -30 168 69 8 1058 262 143 0 31 chr12 62060011 62060076 -59197454 + (TTA)n Simple_repeat Simple_repeat 2 64 0 9 1058 180 0 0 0 chr12 62060831 62060851 -59196679 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1058 288 301 128 23 chr12 62060953 62061171 -59196359 - L1MB3 LINE L1 -108 6075 5835 9 1058 22 35 0 0 chr12 62061494 62061523 -59196007 + AT_rich Low_complexity Low_complexity 1 29 0 9 1058 21 0 0 0 chr12 62063711 62063732 -59193798 + AT_rich Low_complexity Low_complexity 1 21 0 9 1058 1691 213 99 0 chr12 62063757 62064091 -59193439 - ORR1B2 LTR MaLR 0 367 1 9 1058 2067 237 72 13 chr12 62064091 62064617 -59192913 - ORR1B2-int LTR MaLR -809 561 5 9 1058 565 245 179 123 chr12 62064621 62064872 -59192658 - ORR1B2 LTR MaLR 0 374 110 9 1058 2578 139 35 30 chr12 62064873 62065332 -59192198 - RMER6B LTR ERVK 0 461 1 9 1058 4574 146 45 11 chr12 62065333 62066130 -59191400 - MYSERV6-int LTR ERVK -1191 7768 6945 9 1058 315 0 0 0 chr12 62067377 62067412 -59190118 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1058 930 23 121 0 chr12 62069044 62069176 -59188354 + L1Md_F3 LINE L1 6437 6584 0 9 1058 21 36 0 0 chr12 62069335 62069363 -59188167 + AT_rich Low_complexity Low_complexity 1 28 0 1 1058 257 0 30 0 chr12 62069508 62069541 -59187989 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1058 238 316 26 0 chr12 62069693 62069769 -59187761 + ID4 SINE ID 3 80 -3 1 1058 787 215 162 23 chr12 62070188 62070305 -59187225 - Lx9 LINE L1 -1 7643 7491 1 1058 495 0 0 0 chr12 62070305 62070360 -59187170 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1058 774 50 0 0 chr12 62070360 62070458 -59187072 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 1058 787 215 162 23 chr12 62070458 62070605 -59186925 - Lx9 LINE L1 -154 7490 7342 1 1058 7246 79 14 5 chr12 62071445 62072611 -59184919 - L1Md_F2 LINE L1 0 6582 5407 1 1058 15729 93 17 0 chr12 62072610 62074143 -59183387 - L1Md_F2 LINE L1 -2363 3520 1978 1 1058 234 0 0 0 chr12 62074143 62074169 -59183361 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1058 15729 110 28 15 chr12 62074169 62075635 -59181895 - L1Md_F2 LINE L1 -3906 1977 475 1 1058 507 260 43 0 chr12 62076253 62076410 -59181120 - MTE2b LTR MaLR 0 379 216 1 1058 38 22 0 0 chr12 62076787 62076832 -59180698 + AT_rich Low_complexity Low_complexity 1 45 0 1 1058 694 281 90 19 chr12 62077566 62077943 -59179587 - L1MA5 LINE L1 -236 6064 5661 1 1058 532 295 6 33 chr12 62078356 62078567 -59178963 + ORR1D1 LTR MaLR 51 256 -122 1 1058 499 179 17 59 chr12 62078582 62078701 -59178829 + ORR1D1 LTR MaLR 157 270 -104 1 1058 21 82 0 0 chr12 62078821 62078870 -59178660 + AT_rich Low_complexity Low_complexity 1 49 0 1 1058 33 94 0 0 chr12 62079281 62079377 -59178153 + AT_rich Low_complexity Low_complexity 1 96 0 1 1058 1230 90 0 0 chr12 62079491 62079657 -59177873 - L1_Mus1 LINE L1 -304 6263 6098 1 1058 542 100 140 0 chr12 62079657 62079757 -59177773 + L1_Mus1 LINE L1 6452 6565 -2 1 1058 28 0 0 0 chr12 62079955 62079983 -59177547 + AT_rich Low_complexity Low_complexity 1 28 0 1 1058 241 323 183 35 chr12 62080805 62081007 -59176523 - RMER15 LTR ERVL -42 533 302 1 1058 2598 211 48 9 chr12 62081220 62081789 -59175741 - Lx4A LINE L1 -6 7052 6462 1 1058 779 375 51 10 chr12 62081829 62082241 -59175289 + Lx8 LINE L1 6746 7174 -299 1 1058 4053 174 48 3 chr12 62082478 62082733 -59174797 + Lx2B LINE L1 5091 5346 -531 1 1058 1984 37 0 4 chr12 62082733 62082978 -59174552 + L1Md_A LINE L1 6337 6580 -2 1 1058 4053 168 29 5 chr12 62082978 62083633 -59173897 + Lx2B LINE L1 5347 6042 -958 1 1058 2864 223 34 8 chr12 62083636 62084281 -59173249 + Lx2B LINE L1 6337 6998 -2 1 1058 248 366 90 14 chr12 62084548 62084692 -59172838 - MLT-int LTR MaLR -1232 503 349 1 1058 251 239 0 14 chr12 62085061 62085133 -59172397 + A-rich Low_complexity Low_complexity 2 72 0 1 1058 355 167 22 0 chr12 62085459 62085549 -59171981 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1058 685 342 41 41 chr12 62085640 62085930 -59171600 + B4A SINE B4 3 292 0 1 1058 216 0 0 0 chr12 62085962 62085986 -59171544 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1058 31 0 0 0 chr12 62085991 62086022 -59171508 + AT_rich Low_complexity Low_complexity 1 31 0 1 1058 342 313 57 8 chr12 62086319 62086452 -59171078 - B1F1 SINE Alu -2 147 9 1 1058 204 149 0 0 chr12 62086462 62086509 -59171021 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1058 1036 109 0 0 chr12 62086514 62086661 -59170869 - B1_Mus1 SINE Alu 0 148 2 1 1058 225 375 11 22 chr12 62086663 62086753 -59170777 - ID_B1 SINE B4 -134 90 2 1 1058 21 57 0 0 chr12 62086840 62086875 -59170655 + AT_rich Low_complexity Low_complexity 1 35 0 1 1058 492 375 47 8 chr12 62087530 62087764 -59169766 + LTR40b LTR ERVL 215 457 -5 1 1058 267 114 0 0 chr12 62088194 62088238 -59169292 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1058 2682 182 49 18 chr12 62088918 62089462 -59168068 - Lx2 LINE L1 0 5886 5326 1 1058 5757 157 41 14 chr12 62089462 62090564 -59166966 + Lx2 LINE L1 5865 6996 -1 1 1058 243 61 0 0 chr12 62090703 62090736 -59166794 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1058 462 36 0 0 chr12 62090784 62090840 -59166690 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1058 2107 139 122 17 chr12 62091011 62091652 -59165878 - RMER17A LTR ERVK -15 794 1 1 1058 24 0 0 0 chr12 62092884 62092908 -59164622 + AT_rich Low_complexity Low_complexity 1 24 0 1 1058 884 266 39 4 chr12 62093029 62093263 -59164267 + Lx7 LINE L1 7038 7279 -417 1 1058 792 77 0 0 chr12 62093271 62093388 -59164142 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 1 1058 26 0 0 0 chr12 62093451 62093477 -59164053 + AT_rich Low_complexity Low_complexity 1 26 0 1 1058 5972 180 54 17 chr12 62093482 62094706 -59162824 - Lx3C LINE L1 -3 6973 5705 1 1058 1967 208 82 16 chr12 62094841 62095330 -59162200 - RLTR12B LTR ERVK 0 528 8 1 1058 1692 315 42 58 chr12 62095822 62096685 -59160845 + Lx8 LINE L1 6510 7358 -115 1 1058 300 339 79 63 chr12 62098284 62098473 -59159057 + MLT1J LTR MaLR 82 273 -239 1 1058 3449 256 46 85 chr12 62098633 62099507 -59158023 - Lx7 LINE L1 0 7696 6877 1 1058 2179 224 126 18 chr12 62099507 62100172 -59157358 - RMER19A LTR ERVK 0 737 1 1 1058 3449 256 46 85 chr12 62100172 62100519 -59157011 - Lx7 LINE L1 -820 6876 6523 1 1058 292 322 210 11 chr12 62100586 62100762 -59156768 - RMER15 LTR ERVL -40 535 325 1 1058 203 167 0 0 chr12 62100784 62100826 -59156704 + A-rich Low_complexity Low_complexity 1 42 0 1 1058 230 244 70 47 chr12 62101681 62101767 -59155763 + LTR68 LTR ERV1 638 725 -15 1 1058 793 310 55 63 chr12 62102094 62102476 -59155054 - RMER5 LTR ERV1 -155 379 1 1 1058 534 119 0 0 chr12 62102601 62102685 -59154845 + (TTTA)n Simple_repeat Simple_repeat 1 84 0 1 1058 339 210 48 16 chr12 62104202 62104328 -59153202 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 1058 269 315 118 50 chr12 62104359 62104680 -59152850 + LTR37A LTR ERV1 2 344 -82 1 1058 326 353 0 8 chr12 62104862 62104979 -59152551 + PB1D10 SINE Alu 1 116 -1 1 1058 298 281 16 0 chr12 62105011 62105132 -59152398 + GA-rich Low_complexity Low_complexity 1 123 0 1 1058 21 0 0 0 chr12 62105172 62105193 -59152337 + AT_rich Low_complexity Low_complexity 1 21 0 1 1058 595 122 0 30 chr12 62105200 62105214 -59152316 - B1_Mus2 SINE Alu -1 146 135 1 1058 468 0 0 0 chr12 62105214 62105266 -59152264 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 1 1058 595 122 0 30 chr12 62105266 62105352 -59152178 - B1_Mus2 SINE Alu -13 134 49 1 1058 400 165 0 52 chr12 62105688 62105784 -59151746 - L1Md_F2 LINE L1 -3 6579 6489 1 1058 903 121 0 0 chr12 62105784 62105924 -59151606 + (TC)n Simple_repeat Simple_repeat 2 141 0 1 1058 315 0 0 0 chr12 62105924 62105958 -59151572 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1058 236 117 65 32 chr12 62106945 62107007 -59150523 + A-rich Low_complexity Low_complexity 3 66 0 1 1058 23 0 0 0 chr12 62107187 62107210 -59150320 + AT_rich Low_complexity Low_complexity 1 23 0 1 1058 438 306 89 10 chr12 62107273 62107495 -59150035 - MLT2B2 LTR ERVL -292 228 1 1 1058 526 341 48 75 chr12 62107501 62107688 -59149842 + B4A SINE B4 6 189 -103 1 1058 3150 37 34 0 chr12 62107688 62108071 -59149459 - MTA_Mm LTR MaLR 0 396 1 1 1058 526 341 48 75 chr12 62108071 62108178 -59149352 + B4A SINE B4 190 292 0 1 1058 204 55 0 53 chr12 62108386 62108424 -59149106 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1058 3746 138 37 2 chr12 62108431 62109046 -59148484 - Lx2 LINE L1 -3 6994 6358 1 1058 3366 141 30 68 chr12 62109046 62109135 -59148395 + Lx2 LINE L1 5708 5783 -1214 1 1058 1059 86 0 0 chr12 62109135 62109275 -59148255 + B1_Mus2 SINE Alu 1 140 -7 1 1058 3366 141 30 68 chr12 62109275 62109848 -59147682 + Lx2 LINE L1 5784 6345 -652 1 1058 228 111 0 0 chr12 62110355 62110391 -59147139 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1058 3639 181 22 28 chr12 62110476 62111196 -59146334 + Lx4A LINE L1 6339 7054 -4 1 1058 183 80 0 0 chr12 62111196 62111221 -59146309 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1058 468 51 0 4 chr12 62112306 62112377 -59145153 - B1_Mm SINE Alu 0 149 81 1 1058 251 252 90 72 chr12 62112551 62112662 -59144868 + MLT1G1 LTR MaLR 138 250 -329 1 1058 1752 173 128 17 chr12 62113284 62113637 -59143893 - ORR1B1 LTR MaLR -2 392 1 1 1058 319 356 62 36 chr12 62114453 62114677 -59142853 + L1MDa LINE L1 2336 2565 -4068 1 1058 281 266 51 115 chr12 62116243 62116400 -59141130 + MTE2b LTR MaLR 233 379 0 1 1058 686 254 73 34 chr12 62116423 62116627 -59140903 + B3A SINE B2 2 213 -3 1 1058 1684 164 69 0 chr12 62116904 62117208 -59140322 + ORR1A2 LTR MaLR 3 327 0 1 1058 997 189 11 28 chr12 62118036 62118265 -59139265 - Lx2B LINE L1 -2 7056 6694 1 1058 211 150 159 48 chr12 62119119 62119182 -59138348 + ID4_ SINE ID 13 82 -1 1 1058 184 265 45 67 chr12 62119225 62119314 -59138216 - L3 LINE CR1 -3570 919 833 1 1058 362 276 33 10 chr12 62120230 62120336 -59137194 - B1_Mur2 SINE Alu -5 115 13 1 1058 24 53 0 0 chr12 62120343 62120381 -59137149 + AT_rich Low_complexity Low_complexity 1 38 0 1 1058 27 0 0 0 chr12 62120777 62120804 -59136726 + AT_rich Low_complexity Low_complexity 1 27 0 1 1058 604 341 92 37 chr12 62122366 62122637 -59134893 - B4 SINE B4 -4 288 3 1 1058 358 376 34 23 chr12 62122752 62122920 -59134610 + B3A SINE B2 14 184 -14 1 1058 393 117 0 0 chr12 62122920 62122980 -59134550 + (CATA)n Simple_repeat Simple_repeat 3 62 0 1 1058 358 358 15 202 chr12 62122980 62123011 -59134519 + B3A SINE B2 167 195 0 1 1058 835 236 64 5 chr12 62123421 62123625 -59133905 - MTD LTR MaLR 0 419 204 1 1058 318 145 0 0 chr12 62125153 62125215 -59132315 + L1Md_T LINE L1 6521 6582 0 1 1058 23 54 0 0 chr12 62125477 62125514 -59132016 + AT_rich Low_complexity Low_complexity 1 37 0 1 1058 3641 122 15 47 chr12 62125908 62125972 -59131558 + L1_Mus3 LINE L1 5307 5369 -514 1 1058 1160 75 0 0 chr12 62125972 62126119 -59131411 + B1_Mm SINE Alu 1 147 0 1 1058 7642 88 10 24 chr12 62126119 62127410 -59130120 + L1_Mus3 LINE L1 5370 6632 -6 1 1058 221 162 24 48 chr12 62127437 62127521 -59130009 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 1 1059 984 137 324 0 chr12 62128305 62128546 -59128984 - RLTR19-int LTR ERVK -2873 3264 2946 1 1059 2160 191 86 13 chr12 62128576 62129052 -59128478 - RLTR19-int LTR ERVK -3298 2839 2329 1 1059 314 186 43 0 chr12 62129293 62129363 -59128167 - RLTR19-int LTR ERVK -1814 1424 1352 1 1059 2353 198 44 106 chr12 62129377 62129643 -59127887 - RLTR19-int LTR ERVK -4902 1235 1030 1 1059 1710 176 12 38 chr12 62129643 62129986 -59127544 - Lx3B LINE L1 -4 6969 6636 2 1059 2353 187 38 109 chr12 62129986 62130191 -59127339 - RLTR19-int LTR ERVK -5108 1029 836 1 1059 3870 219 16 12 chr12 62130191 62131049 -59126481 + Lx2B LINE L1 6139 7000 0 2 1059 2353 187 38 109 chr12 62131049 62131271 -59126259 - RLTR19-int LTR ERVK -5302 835 622 1 1059 3626 136 26 3 chr12 62131299 62131883 -59125647 - RLTR33 LTR ERVK -81 597 1 2 1059 285 358 118 38 chr12 62132213 62132527 -59125003 + Lx8 LINE L1 6760 7098 -375 2 1059 2442 168 73 83 chr12 62132559 62133171 -59124359 - RMER6C LTR ERVK -77 613 8 2 1059 21 0 0 0 chr12 62133284 62133305 -59124225 + AT_rich Low_complexity Low_complexity 1 21 0 2 1059 1061 89 7 0 chr12 62133347 62133493 -59124037 + B1_Mus1 SINE Alu 1 147 -1 2 1059 283 0 23 45 chr12 62133494 62133538 -59123992 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 2 1059 373 350 0 0 chr12 62133554 62133654 -59123876 + PB1D10 SINE Alu 4 103 -14 2 1059 7866 149 48 17 chr12 62133689 62135142 -59122388 + Lx2A1 LINE L1 5499 7002 -6 2 1059 504 48 0 0 chr12 62135396 62135459 -59122071 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1059 385 379 172 11 chr12 62135704 62136160 -59121370 + MER21B LTR ERV1 178 705 -158 2 1059 335 340 37 51 chr12 62136306 62136520 -59121010 - RMER5 LTR ERV1 -277 257 47 2 1059 360 0 0 0 chr12 62136707 62136747 -59120783 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1059 292 370 34 15 chr12 62136906 62137112 -59120418 - MER67C LTR ERV1 -309 402 193 2 1059 196 226 97 97 chr12 62137446 62137539 -59119991 + L3 LINE CR1 3099 3191 -1298 2 1059 297 0 0 0 chr12 62137850 62137883 -59119647 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1059 225 65 0 0 chr12 62138419 62138450 -59119080 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 1059 195 42 0 0 chr12 62138801 62138825 -59118705 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1059 289 275 15 44 chr12 62139002 62139139 -59118391 + L1MA7 LINE L1 5866 5998 -293 2 1059 520 299 83 33 chr12 62139302 62139482 -59118048 + B4 SINE B4 6 194 -98 2 1059 777 286 129 47 chr12 62139796 62140284 -59117246 + Lx9 LINE L1 6850 7377 -267 2 1059 228 67 0 0 chr12 62140429 62140459 -59117071 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2 1059 1386 200 6 104 chr12 62140942 62141288 -59116242 + RLTR41 LTR ERV1 56 367 -79 2 1059 46 33 0 0 chr12 62141288 62141348 -59116182 + AT_rich Low_complexity Low_complexity 1 60 0 2 1059 1150 76 0 0 chr12 62142220 62142377 -59115153 + L1Md_F2 LINE L1 6414 6570 -12 2 1059 22 80 0 0 chr12 62143234 62143284 -59114246 + AT_rich Low_complexity Low_complexity 1 50 0 2 1059 2460 231 56 19 chr12 62143447 62144038 -59113492 + RLTR18 LTR ERVK 4 616 0 2 1059 621 40 0 0 chr12 62144535 62144611 -59112919 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 1059 426 394 58 48 chr12 62144615 62145010 -59112520 + MLT1E2 LTR MaLR 207 605 -22 2 1059 999 43 0 0 chr12 62145156 62145273 -59112257 + L1Md_F2 LINE L1 5470 5586 -297 2 1059 8042 48 1 1 chr12 62145273 62146264 -59111266 + L1Md_F2 LINE L1 5587 6577 -5 2 1059 842 130 7 0 chr12 62147036 62147190 -59110340 + (TC)n Simple_repeat Simple_repeat 2 156 0 2 1059 1092 77 0 0 chr12 62149282 62149504 -59108026 + (TTC)n Simple_repeat Simple_repeat 1 222 0 2 1059 711 0 0 0 chr12 62149504 62149583 -59107947 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 1059 3049 131 91 13 chr12 62149583 62150109 -59107421 - Lx3_Mus LINE L1 -21 6988 6422 2 1059 285 313 91 78 chr12 62150334 62150566 -59106964 + RLTR18 LTR ERVK 20 254 -258 2 1059 2886 154 0 0 chr12 62150569 62151011 -59106519 - Lx LINE L1 -190 6464 6023 2 1059 222 37 0 0 chr12 62151012 62151039 -59106491 + (TTC)n Simple_repeat Simple_repeat 2 28 0 2 1059 3968 172 168 16 chr12 62151040 62151931 -59105599 - L1_Mus4 LINE L1 0 6636 5610 2 1059 221 30 0 57 chr12 62152007 62152042 -59105488 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1059 295 139 3 21 chr12 62152849 62152912 -59104618 - L1_Mur1 LINE L1 -6477 505 455 2 1059 4289 179 16 1 chr12 62152952 62153728 -59103802 + Lx3B LINE L1 6185 6971 -2 2 1059 34 42 0 0 chr12 62153736 62153784 -59103746 + AT_rich Low_complexity Low_complexity 1 48 0 2 1059 1030 102 4 8 chr12 62153902 62154169 -59103361 + (TA)n Simple_repeat Simple_repeat 1 265 0 2 1059 672 203 42 0 chr12 62154536 62154654 -59102876 - ETnERV2-int LTR ERVK -214 7192 7070 2 1059 576 229 0 0 chr12 62154654 62154794 -59102736 + (TA)n Simple_repeat Simple_repeat 2 141 0 2 1059 7126 186 33 4 chr12 62154796 62155963 -59101567 - Lx3C LINE L1 0 6976 5772 2 1059 4143 35 0 0 chr12 62155963 62156445 -59101085 - LTRIS_Mm LTR ERV1 0 482 1 2 1059 7126 189 31 14 chr12 62156445 62157417 -59100113 - Lx3C LINE L1 -109 5777 4786 2 1059 20384 170 34 11 chr12 62157431 62163118 -59094412 - L1_Mus1 LINE L1 -4 6563 746 2 1059 906 119 6 38 chr12 62163326 62163483 -59094047 - Lx3C LINE L1 -426 5460 5309 2 1059 189 0 0 0 chr12 62163496 62163517 -59094013 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2 1059 648 0 0 0 chr12 62163523 62163595 -59093935 + (TTC)n Simple_repeat Simple_repeat 2 73 0 2 1059 6812 119 8 2 chr12 62163600 62165059 -59092471 - L1_Mus1 LINE L1 0 6567 5099 2 1059 1398 152 0 24 chr12 62165086 62165336 -59092194 - L1Md_F2 LINE L1 0 6582 6339 2 1059 5559 75 30 0 chr12 62165339 62166238 -59091292 + L1Md_F2 LINE L1 5429 6344 -238 2 1059 13218 136 14 5 chr12 62166235 62168453 -59089077 - L1_Mus1 LINE L1 -770 5113 2874 2 1059 6576 131 7 39 chr12 62168441 62169754 -59087776 - L1_Mus1 LINE L1 -3555 2328 1072 2 1059 544 43 168 32 chr12 62169754 62169849 -59087681 + L1Md_F2 LINE L1 6462 6569 -13 2 1059 1989 171 11 157 chr12 62169849 62170229 -59087301 - L1_Mus1 LINE L1 -5533 1083 725 2 1059 377 248 54 8 chr12 62170229 62170359 -59087171 - L1_Mus1 LINE L1 -5804 812 677 2 1059 402 308 22 83 chr12 62170373 62170714 -59086816 - L1VL1 LINE L1 -5931 487 46 2 1059 266 214 0 0 chr12 62170715 62170771 -59086759 - L1_Mur1 LINE L1 -628 5258 5203 2 1059 7996 43 12 0 chr12 62170769 62171985 -59085545 + L1Md_F3 LINE L1 5471 6584 0 2 1059 941 149 23 23 chr12 62171987 62172159 -59085371 + RMER19A LTR ERVK 451 622 -115 2 1059 4635 97 25 53 chr12 62172169 62173216 -59084314 + L1Md_F LINE L1 460 1471 -4412 2 1059 13458 81 4 0 chr12 62173185 62175039 -59082491 + L1Md_F LINE L1 2472 4332 -1551 2 1059 325 326 147 0 chr12 62175286 62175415 -59082115 - B1_Mur2 SINE Alu 0 149 2 2 1059 283 327 20 10 chr12 62176297 62176399 -59081131 + RMER15 LTR ERVL 459 561 -14 2 1059 372 321 49 28 chr12 62178575 62178595 -59078935 - B1F SINE Alu -2 147 1 2 1059 506 266 97 0 chr12 62178595 62178719 -59078811 - ID_B1 SINE B4 -7 217 82 2 1059 508 63 0 0 chr12 62178812 62178875 -59078655 - L1_Mus1 LINE L1 -228 6339 6277 2 1059 788 69 250 0 chr12 62178874 62179018 -59078512 + L1Md_F2 LINE L1 6401 6580 -2 2 1059 241 100 40 0 chr12 62179028 62179078 -59078452 + (GAAAA)n Simple_repeat Simple_repeat 1 52 0 2 1059 240 122 0 93 chr12 62179177 62179231 -59078299 + Lx3A LINE L1 6924 6972 -9 2 1059 29 60 0 0 chr12 62180109 62180159 -59077371 + AT_rich Low_complexity Low_complexity 1 50 0 2 1059 561 150 0 0 chr12 62180232 62180332 -59077198 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 1059 1467 262 72 37 chr12 62180589 62180938 -59076592 - MTC LTR MaLR -2 419 47 2 1059 3503 52 7 7 chr12 62180938 62181382 -59076148 + L1Md_F2 LINE L1 6127 6570 -12 2 1059 1467 262 72 37 chr12 62181382 62181437 -59076093 - MTC LTR MaLR -375 46 1 2 1059 251 371 17 33 chr12 62181720 62181840 -59075690 + PB1D9 SINE Alu 3 120 0 2 1059 190 109 21 42 chr12 62181876 62181924 -59075606 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1059 972 121 121 0 chr12 62181936 62182102 -59075428 + B2_Mm2 SINE B2 3 188 -7 2 1059 292 287 109 47 chr12 62182217 62182345 -59075185 - B1F1 SINE Alu -2 147 12 2 1059 1058 234 38 51 chr12 62183529 62183844 -59073686 - Lx6 LINE L1 -410 7050 6740 2 1059 793 153 117 0 chr12 62183841 62184004 -59073526 - Lx LINE L1 -2 6652 6471 2 1059 4176 244 42 39 chr12 62184019 62184173 -59073357 - Lx6 LINE L1 -728 6732 6561 2 1059 7886 100 13 52 chr12 62184173 62185454 -59072076 + Lx3_Mus LINE L1 5765 6996 -13 2 1059 4176 240 48 29 chr12 62185454 62186493 -59071037 - Lx6 LINE L1 -900 6560 5525 2 1059 28 48 0 0 chr12 62186788 62186830 -59070700 + AT_rich Low_complexity Low_complexity 1 42 0 2 1059 2961 171 49 12 chr12 62186835 62187427 -59070103 - Lx4B LINE L1 -536 6522 5909 2 1059 1794 195 37 21 chr12 62187431 62187814 -59069716 - ORR1B1 LTR MaLR -5 389 1 2 1059 13035 140 63 8 chr12 62187817 62188731 -59068799 - Lx4B LINE L1 -1144 5914 4793 2 1059 396 0 0 0 chr12 62188731 62188775 -59068755 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1059 13035 156 94 13 chr12 62188775 62188935 -59068595 - Lx4B LINE L1 -1085 4792 4631 2 1059 261 0 0 0 chr12 62188935 62188964 -59068566 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1059 13035 156 94 13 chr12 62188964 62190651 -59066879 - Lx4B LINE L1 -1247 4630 2926 2 1059 23 0 0 0 chr12 62191557 62191580 -59065950 + AT_rich Low_complexity Low_complexity 1 23 0 2 1059 36 53 0 0 chr12 62192545 62192602 -59064928 + AT_rich Low_complexity Low_complexity 1 57 0 2 1059 24 53 0 0 chr12 62193511 62193549 -59063981 + AT_rich Low_complexity Low_complexity 1 38 0 2 1059 239 297 293 43 chr12 62194484 62194600 -59062930 + RSINE1 SINE B4 12 156 -9 2 1059 6962 8 0 5 chr12 62194742 62195527 -59062003 - L1Md_T LINE L1 0 6582 5802 2 1059 4914 84 3 5 chr12 62195525 62196192 -59061338 - L1_Mus1 LINE L1 -19 6548 5883 2 1059 2410 132 106 57 chr12 62196197 62196737 -59060793 - RMER17A LTR ERVK 0 751 186 2 1059 808 61 0 0 chr12 62196737 62196835 -59060695 + L1Md_F2 LINE L1 5489 5586 -297 2 1059 8064 45 4 1 chr12 62196836 62197828 -59059702 + L1Md_F2 LINE L1 5588 6582 0 2 1059 30516 116 23 17 chr12 62198139 62204591 -59052939 + Lx3_Mus LINE L1 3 6880 -129 2 1059 1403 160 0 4 chr12 62204755 62205006 -59052524 - Lx2 LINE L1 -1 6996 6747 2 1059 335 298 104 8 chr12 62205008 62205133 -59052397 - B3A SINE B2 -54 144 8 2 1059 304 202 94 12 chr12 62205315 62205400 -59052130 - B3 SINE B2 0 216 125 2 1059 456 347 0 26 chr12 62205401 62205552 -59051978 - Lx8 LINE L1 -1103 6370 6224 2 1059 200 86 0 28 chr12 62205807 62205843 -59051687 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2 1059 658 307 124 48 chr12 62206042 62206628 -59050902 - Lx8 LINE L1 -1722 5922 5314 2 1059 324 0 0 0 chr12 62206628 62206664 -59050866 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 2 1059 658 300 38 22 chr12 62206664 62206920 -59050610 - Lx8 LINE L1 -817 5326 5077 2 1059 22 0 0 0 chr12 62206990 62207012 -59050518 + AT_rich Low_complexity Low_complexity 1 22 0 2 1059 915 96 43 29 chr12 62207617 62207756 -59049774 + B1_Mus1 SINE Alu 3 143 -5 2 1059 1104 83 0 0 chr12 62208383 62208528 -59049002 + B1_Mus2 SINE Alu 1 145 -2 3 1059 237 337 72 0 chr12 62209390 62209473 -59048057 - PB1D7 SINE Alu -5 115 27 3 1059 2533 105 21 18 chr12 62209765 62210153 -59047377 - Lx3_Mus LINE L1 -1 7008 6620 3 1059 225 108 0 0 chr12 62215503 62215540 -59041990 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1059 4658 35 26 0 chr12 62215622 62216199 -59041331 - L1Md_T LINE L1 -1389 4494 3903 3 1059 9670 25 0 3 chr12 62216197 62217337 -59040193 + L1Md_T LINE L1 4451 5586 -297 3 1059 8308 37 1 0 chr12 62217338 62218332 -59039198 + L1Md_T LINE L1 5588 6582 0 3 1059 265 318 140 34 chr12 62218703 62218882 -59038648 - B3A SINE B2 0 198 1 3 1059 3657 212 139 7 chr12 62218903 62219872 -59037658 + L1_Mur1 LINE L1 4790 5886 0 3 1059 10684 106 4 5 chr12 62219893 62222269 -59035261 + L1_Mus2 LINE L1 4197 6566 0 3 1059 21 36 0 0 chr12 62223030 62223058 -59034472 + AT_rich Low_complexity Low_complexity 1 28 0 3 1059 23 0 0 0 chr12 62223153 62223176 -59034354 + AT_rich Low_complexity Low_complexity 1 23 0 3 1059 386 72 0 42 chr12 62224466 62224538 -59032992 + (T)n Simple_repeat Simple_repeat 1 69 0 3 1059 180 0 0 0 chr12 62224536 62224556 -59032974 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1059 360 342 82 53 chr12 62224844 62225051 -59032479 + ID_B1 SINE B4 10 222 -2 3 1059 592 170 0 9 chr12 62225091 62225198 -59032332 - B3 SINE B2 -109 107 2 3 1059 786 22 0 0 chr12 62226087 62226179 -59031351 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1059 3478 89 2 8 chr12 62226343 62226831 -59030699 + RLTR1C LTR ERV1 3 487 -16 3 1059 4216 126 40 28 chr12 62226923 62227665 -59029865 + RMER17A LTR ERVK 1 751 0 3 1059 207 0 0 0 chr12 62227703 62227726 -59029804 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1059 4577 86 21 8 chr12 62228685 62229342 -59028188 + L1Md_F2 LINE L1 5917 6582 0 3 1059 8022 45 0 0 chr12 62229388 62230429 -59027101 - L1Md_T LINE L1 0 6582 5542 3 1059 685 268 107 18 chr12 62230432 62230713 -59026817 + Lx7 LINE L1 100 405 -7323 3 1059 2683 221 49 7 chr12 62230715 62231487 -59026043 + Lx7 LINE L1 5145 5949 -1747 3 1059 474 261 195 5 chr12 62231471 62231656 -59025874 + Lx7 LINE L1 7064 7283 -413 3 1059 943 260 104 34 chr12 62232179 62232593 -59024937 + Lx7 LINE L1 7254 7696 0 3 1059 32 75 0 0 chr12 62232684 62232751 -59024779 + AT_rich Low_complexity Low_complexity 1 67 0 3 1059 351 286 24 0 chr12 62233012 62233138 -59024392 - Lx9 LINE L1 -7 7637 7509 3 1059 1803 202 92 132 chr12 62233373 62234079 -59023451 + RMER6C LTR ERVK 5 682 -8 3 1059 181 333 119 0 chr12 62234113 62234197 -59023333 - L2 LINE L2 -559 2860 2767 3 1059 7123 114 57 10 chr12 62234396 62235521 -59022009 + Lx3A LINE L1 5800 6977 -4 3 1059 246 32 0 0 chr12 62235648 62235679 -59021851 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1059 1149 263 95 8 chr12 62235686 62236043 -59021487 + MTD LTR MaLR 4 391 -28 3 1059 180 0 0 0 chr12 62236044 62236064 -59021466 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1059 411 280 53 60 chr12 62236135 62236268 -59021262 - MTD LTR MaLR -145 274 143 3 1059 35 24 0 0 chr12 62236334 62236376 -59021154 + AT_rich Low_complexity Low_complexity 1 42 0 3 1059 25 31 0 0 chr12 62238074 62238106 -59019424 + AT_rich Low_complexity Low_complexity 1 32 0 3 1059 5529 155 1 2 chr12 62238299 62239200 -59018330 - Lx2 LINE L1 -8 6989 6090 3 1059 207 100 0 0 chr12 62239537 62239567 -59017963 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 3 1059 1358 11 23 0 chr12 62239568 62239744 -59017786 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1059 3026 132 38 2 chr12 62239744 62240239 -59017291 - Lx3B LINE L1 -1 6972 6460 3 1059 27 0 0 0 chr12 62240239 62240266 -59017264 + AT_rich Low_complexity Low_complexity 1 27 0 3 1059 234 262 110 8 chr12 62240660 62240787 -59016743 - L1MB8 LINE L1 -219 5959 5820 3 1059 181 238 0 45 chr12 62240943 62240987 -59016543 - L3 LINE CR1 -134 4355 4314 3 1059 360 332 159 32 chr12 62241339 62241808 -59015722 - MER34 LTR ERV1 -3 539 11 3 1059 21 82 0 0 chr12 62242102 62242151 -59015379 + AT_rich Low_complexity Low_complexity 1 49 0 3 1059 272 394 31 0 chr12 62242482 62242609 -59014921 - RSINE1 SINE B4 -31 134 4 3 1059 405 296 127 42 chr12 62242685 62243182 -59014348 - L1MB8 LINE L1 -2160 3986 3448 3 1059 349 320 67 24 chr12 62243589 62243797 -59013733 + L1MC2 LINE L1 6127 6343 -1 3 1059 237 304 47 47 chr12 62244390 62244497 -59013033 - PB1D10 SINE Alu -10 107 1 3 1059 405 338 92 7 chr12 62244497 62244562 -59012968 - B4 SINE B4 -206 86 9 3 1059 507 335 30 6 chr12 62244557 62244722 -59012808 - MTEa LTR MaLR -203 176 8 3 1059 247 270 32 0 chr12 62245080 62245143 -59012387 + ID2 SINE ID 4 68 -15 3 1059 264 309 0 68 chr12 62245325 62245398 -59012132 + ID4_ SINE ID 11 78 -5 3 1059 7190 81 8 15 chr12 62245657 62246917 -59010613 - L1_Mus2 LINE L1 -1 6565 5309 3 1059 287 300 0 0 chr12 62249366 62249446 -59008084 + ID4 SINE ID 4 83 0 3 1059 216 0 0 0 chr12 62249932 62249956 -59007574 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 3 1059 1405 234 46 5 chr12 62250036 62250580 -59006950 + Lx7 LINE L1 5543 6115 -1581 3 1059 1587 207 33 6 chr12 62250579 62251312 -59006218 - L1_Mur3 LINE L1 -4270 1610 862 3 1059 3266 178 33 10 chr12 62251340 62251954 -59005576 - Lx4A LINE L1 0 7058 6431 3 1059 623 284 50 15 chr12 62253570 62253770 -59003760 + MTEb LTR MaLR 159 365 -14 3 1059 418 291 7 86 chr12 62254601 62254740 -59002790 - RLTR33 LTR ERVK -82 596 469 3 1059 388 191 0 63 chr12 62254821 62254916 -59002614 - RLTR19C LTR ERVK -399 107 19 3 132 35287 48 3 3 chr12 62255482 62260886 -58996644 + L1Md_T LINE L1 93 5589 -297 3 1060 8372 37 0 0 chr12 62260886 62261882 -58995648 + L1Md_T LINE L1 5590 6585 0 3 1060 957 215 66 60 chr12 62261908 62262261 -58995269 + RMER10B LTR ERVL 1 374 -68 3 1060 1038 134 15 79 chr12 62262482 62262685 -58994845 - L1MA5A LINE L1 -599 6398 6209 3 1060 1980 125 17 9 chr12 62262683 62263029 -58994501 + Lx2 LINE L1 5825 6173 -824 3 1060 863 192 44 6 chr12 62263018 62263201 -58994329 - Lx2B LINE L1 -299 6701 6512 3 1060 2974 166 8 5 chr12 62263194 62263748 -58993782 - L1MA5A LINE L1 -408 5889 5362 3 1060 1929 199 9 59 chr12 62263749 62264191 -58993339 - RLTR31_Mm LTR ERVK 0 561 142 3 1060 582 169 6 55 chr12 62264202 62264296 -58993234 + RLTR31_Mm LTR ERVK 1 93 -468 3 1060 441 0 0 0 chr12 62264296 62264345 -58993185 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1060 582 169 6 55 chr12 62264345 62264413 -58993117 + RLTR31_Mm LTR ERVK 94 154 -407 3 1060 280 384 14 36 chr12 62264630 62264911 -58992619 - B4A SINE B4 -17 275 1 3 1060 26 109 0 0 chr12 62265670 62265780 -58991750 + AT_rich Low_complexity Low_complexity 1 110 0 3 1060 32 57 0 0 chr12 62265807 62265860 -58991670 + AT_rich Low_complexity Low_complexity 1 53 0 3 1060 192 40 0 0 chr12 62267054 62267079 -58990451 + (GGA)n Simple_repeat Simple_repeat 3 27 0 3 1060 21 36 0 0 chr12 62267355 62267383 -58990147 + AT_rich Low_complexity Low_complexity 1 28 0 3 1060 2129 153 50 60 chr12 62267456 62267874 -58989656 - Lx2 LINE L1 -1 6996 6583 3 1060 1896 251 71 10 chr12 62269850 62270330 -58987200 + Lx7 LINE L1 6333 6841 -855 3 1060 6169 201 34 53 chr12 62270336 62271767 -58985763 - RMER12B LTR ERVK 0 1404 1 3 1060 1220 286 75 19 chr12 62271767 62272231 -58985299 + Lx7 LINE L1 6842 7331 -365 3 1060 180 0 0 0 chr12 62272231 62272251 -58985279 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1060 962 230 79 50 chr12 62272321 62272664 -58984866 + Lx7 LINE L1 7326 7678 -18 3 1060 3358 129 24 11 chr12 62272673 62273221 -58984309 - Lx3B LINE L1 -582 6391 5837 3 1060 2494 172 110 2 chr12 62273208 62273697 -58983833 + Lx3C LINE L1 6433 6974 -2 3 1060 225 47 0 65 chr12 62273699 62273745 -58983785 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 3 1060 24 67 0 0 chr12 62274039 62274084 -58983446 + AT_rich Low_complexity Low_complexity 1 45 0 3 1060 22 56 0 0 chr12 62274303 62274339 -58983191 + AT_rich Low_complexity Low_complexity 1 36 0 3 1060 219 36 0 0 chr12 62276843 62276871 -58980659 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1060 341 297 66 0 chr12 62277188 62277279 -58980251 + B3A SINE B2 19 115 -83 3 1060 3936 239 48 48 chr12 62278170 62278640 -58978890 + Lx6 LINE L1 5716 6196 -1264 3 1060 1328 158 58 8 chr12 62278640 62278901 -58978629 - Lx LINE L1 0 6654 6381 3 1060 3936 239 48 48 chr12 62278901 62279546 -58977984 + Lx6 LINE L1 6197 6831 -629 3 1060 1629 273 27 20 chr12 62279545 62279983 -58977547 + Lx6 LINE L1 7010 7450 -10 3 1060 5853 76 10 8 chr12 62279998 62280793 -58976737 + L1Md_F2 LINE L1 5775 6571 -11 3 1060 25668 27 0 0 chr12 62281152 62284195 -58973335 + L1Md_T LINE L1 2542 5585 -298 3 1060 8396 35 0 0 chr12 62284196 62285191 -58972339 + L1Md_T LINE L1 5587 6581 -1 3 1060 207 0 0 0 chr12 62285646 62285669 -58971861 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1060 923 106 7 0 chr12 62285846 62285988 -58971542 + (GA)n Simple_repeat Simple_repeat 2 144 0 3 1060 189 0 0 0 chr12 62286164 62286185 -58971345 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1060 282 268 27 3 chr12 62286185 62286296 -58971234 + L1MA4 LINE L1 5796 5929 -371 3 1060 2183 207 82 45 chr12 62286296 62286923 -58970607 - RMER13B LTR ERVK -138 770 1 3 1060 1181 106 0 6 chr12 62286973 62287154 -58970376 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1060 351 0 0 0 chr12 62287154 62287193 -58970337 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 3 1060 405 0 0 0 chr12 62287194 62287239 -58970291 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1060 1151 106 0 16 chr12 62287239 62287422 -58970108 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1060 1623 188 114 43 chr12 62287513 62288044 -58969486 - BGLII_B LTR ERVK -106 455 3 3 1060 584 257 21 59 chr12 62288582 62288768 -58968762 + RMER12 LTR ERVK 1144 1322 0 3 1060 2120 139 12 29 chr12 62289146 62289167 -58968363 - Lx LINE L1 -7 6647 6623 3 1060 225 83 0 0 chr12 62289167 62289203 -58968327 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 3 1060 2120 139 12 29 chr12 62289203 62289589 -58967941 - Lx LINE L1 -32 6622 6248 3 1060 927 258 123 15 chr12 62289637 62289971 -58967559 - ORR1D1 LTR MaLR -4 370 1 3 1060 1159 103 0 94 chr12 62290111 62290314 -58967216 + L1_Mus2 LINE L1 6381 6564 -2 3 1060 22 80 0 0 chr12 62290708 62290758 -58966772 + AT_rich Low_complexity Low_complexity 1 50 0 4 1060 185 188 35 12 chr12 62290763 62290849 -58966681 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 1060 188 35 35 0 chr12 62290897 62290926 -58966604 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 4 1060 16575 110 68 4 chr12 62290936 62296205 -58961325 - L1Md_F2 LINE L1 -1 6584 491 4 1060 198 0 0 0 chr12 62296281 62296303 -58961227 + (G)n Simple_repeat Simple_repeat 1 22 0 4 1060 612 77 0 0 chr12 62297126 62297217 -58960313 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1060 421 284 104 47 chr12 62297409 62297620 -58959910 + Lx2B LINE L1 6778 7000 0 4 1060 24 53 0 0 chr12 62297657 62297695 -58959835 + AT_rich Low_complexity Low_complexity 1 38 0 4 1060 709 362 65 45 chr12 62298087 62298592 -58958938 + Lx8 LINE L1 6127 6667 -806 4 1060 195 42 0 0 chr12 62298592 62298616 -58958914 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 1060 709 362 65 45 chr12 62298616 62298870 -58958660 + Lx8 LINE L1 6668 6901 -572 4 1060 427 234 178 7 chr12 62299007 62299153 -58958377 - ORR1D2 LTR MaLR 0 370 200 4 1060 2082 123 17 55 chr12 62299153 62299514 -58958016 + Lx3A LINE L1 6627 6973 -8 4 1060 24 32 0 0 chr12 62300567 62300598 -58956932 + AT_rich Low_complexity Low_complexity 1 31 0 4 1060 284 285 28 35 chr12 62300680 62300822 -58956708 - L1MA6 LINE L1 -19 6281 6141 4 1060 2407 73 0 3 chr12 62301403 62301720 -58955810 + L1_Mus1 LINE L1 6252 6567 0 4 1060 454 295 82 19 chr12 62302145 62302304 -58955226 + ORR1E LTR MaLR 5 173 -186 4 1060 15658 52 2 60 chr12 62302315 62304530 -58953000 + L1Md_F2 LINE L1 3500 5586 -297 4 1060 7875 57 1 5 chr12 62304531 62305529 -58952001 + L1Md_F2 LINE L1 5588 6581 -1 4 1060 4741 59 0 0 chr12 62305529 62306124 -58951406 + L1Md_F3 LINE L1 4992 5586 -297 4 1060 7748 57 1 5 chr12 62306124 62307165 -58950365 + L1Md_F3 LINE L1 5587 6584 0 4 1060 21 36 0 0 chr12 62307878 62307906 -58949624 + AT_rich Low_complexity Low_complexity 1 28 0 4 1060 405 288 40 34 chr12 62308168 62308344 -58949186 - MER5B DNA MER1_type 0 178 2 4 1060 1850 131 6 16 chr12 62308980 62309297 -58948233 - L1_Mur2 LINE L1 -876 5001 4688 4 1060 723 244 64 42 chr12 62309289 62309593 -58947937 + Lx4B LINE L1 6658 7053 -5 4 1060 24 77 0 0 chr12 62309659 62309711 -58947819 + AT_rich Low_complexity Low_complexity 1 52 0 4 1060 1288 355 51 24 chr12 62309711 62310530 -58947000 + Lx9 LINE L1 6341 7181 -463 4 1060 2209 124 15 3 chr12 62310599 62310938 -58946592 + Lx2A LINE L1 5751 6093 -915 4 1060 488 301 32 69 chr12 62310981 62311011 -58946519 - B3A SINE B2 -16 182 154 4 1060 522 0 0 0 chr12 62311011 62311069 -58946461 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1060 486 0 0 0 chr12 62311069 62311122 -58946408 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1060 488 301 32 69 chr12 62311122 62311279 -58946251 - B3A SINE B2 -45 153 2 4 1060 4726 61 0 3 chr12 62311794 62312390 -58945140 + L1Md_F2 LINE L1 5988 6581 -1 4 1060 4686 247 128 42 chr12 62313111 62315682 -58941848 + Lx6 LINE L1 4580 7442 -18 4 1060 315 0 0 0 chr12 62315682 62315717 -58941813 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 4 1060 1043 139 0 6 chr12 62315718 62315899 -58941631 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1060 225 0 0 0 chr12 62315900 62315925 -58941605 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 4 1060 1833 221 111 23 chr12 62316549 62317063 -58940467 + Lx5 LINE L1 6074 6632 -418 4 1060 242 204 106 11 chr12 62317032 62317126 -58940404 + Lx5 LINE L1 6945 7047 -3 4 1060 608 325 7 0 chr12 62317144 62317298 -58940232 + B3A SINE B2 2 156 -42 4 1060 612 27 0 0 chr12 62317341 62317415 -58940115 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1060 24 0 0 0 chr12 62317415 62317439 -58940091 + AT_rich Low_complexity Low_complexity 1 24 0 4 1060 942 347 87 27 chr12 62317488 62317763 -58939767 - Lx8 LINE L1 -1000 6473 6195 4 1060 237 108 0 0 chr12 62317763 62317800 -58939730 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1060 942 347 87 27 chr12 62317800 62318218 -58939312 - Lx8 LINE L1 -1279 6194 5740 4 1060 956 348 48 21 chr12 62318220 62318784 -58938746 - Lx6 LINE L1 -26 7434 6484 4 1060 5225 252 52 33 chr12 62318815 62319432 -58938098 - Lx6 LINE L1 -693 6365 5703 4 1060 251 0 59 0 chr12 62319432 62319466 -58938064 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1060 5225 211 68 20 chr12 62319466 62320679 -58936851 - Lx6 LINE L1 -178 5702 4424 4 1060 7468 158 68 17 chr12 62320674 62322791 -58934739 - Lx LINE L1 -6 6648 4349 4 1060 567 0 0 0 chr12 62322791 62322854 -58934676 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 4 1060 7468 172 122 31 chr12 62322854 62322880 -58934650 - L1_Mur2 LINE L1 -1529 4348 4348 4 1060 1139 82 0 0 chr12 62322880 62323026 -58934504 - B1_Mus1 SINE Alu 0 148 3 4 1060 7468 172 122 31 chr12 62323026 62323274 -58934256 - Lx LINE L1 -1529 4348 4092 4 1060 2007 40 4 0 chr12 62323274 62323525 -58934005 - MTA_Mm LTR MaLR 0 396 145 4 1060 3378 220 98 145 chr12 62323525 62325088 -58932442 - Lx LINE L1 -2358 3519 2031 4 1060 663 287 35 45 chr12 62325071 62325668 -58931862 - Lx LINE L1 -4412 1468 892 4 1060 853 322 38 38 chr12 62326215 62326693 -58930837 - Lx8 LINE L1 -131 5749 5272 4 1060 897 176 80 29 chr12 62326701 62326876 -58930654 + MT2B LTR ERVL 16 199 -402 4 1060 598 330 56 40 chr12 62327481 62327803 -58929727 - Lx8 LINE L1 -939 6534 6208 4 1060 22 0 0 0 chr12 62327807 62327829 -58929701 + AT_rich Low_complexity Low_complexity 1 22 0 4 1060 912 267 63 0 chr12 62327963 62328218 -58929312 + Lx8 LINE L1 6647 6917 -556 4 1060 330 298 85 47 chr12 62328447 62328683 -58928847 + Lx8 LINE L1 7187 7431 -42 4 1060 35 24 0 0 chr12 62328810 62328852 -58928678 + AT_rich Low_complexity Low_complexity 1 42 0 4 1060 29 28 0 0 chr12 62328917 62328953 -58928577 + AT_rich Low_complexity Low_complexity 1 36 0 4 1060 373 193 92 42 chr12 62328996 62329115 -58928415 - Lx9 LINE L1 -174 7470 7346 4 1060 1454 193 63 3 chr12 62329129 62329430 -58928100 + Lx9 LINE L1 6765 7083 -561 4 1060 320 43 0 21 chr12 62329435 62329482 -58928048 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1060 369 75 0 0 chr12 62330179 62330232 -58927298 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1060 1661 193 40 31 chr12 62330232 62330585 -58926945 - ORR1B1 LTR MaLR 0 394 39 4 1060 7324 198 50 79 chr12 62330589 62332608 -58924922 - ORR1B1-int LTR MaLR 0 1963 2 4 1060 886 181 24 12 chr12 62332609 62332777 -58924753 - ORR1B1 LTR MaLR 0 394 225 4 1060 432 0 0 0 chr12 62332783 62332831 -58924699 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1060 875 214 37 11 chr12 62332841 62333030 -58924500 + ORR1B1 LTR MaLR 47 240 -154 4 1060 1810 280 52 34 chr12 62333785 62334458 -58923072 + Lx7 LINE L1 6708 7392 -304 4 1060 375 89 0 0 chr12 62334458 62334514 -58923016 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1060 23 68 0 0 chr12 62334565 62334609 -58922921 + AT_rich Low_complexity Low_complexity 1 44 0 4 1060 3851 155 9 25 chr12 62334754 62335434 -58922096 + Lx3B LINE L1 6301 6969 -4 4 1060 955 338 66 63 chr12 62335853 62336122 -58921408 - Lx8 LINE L1 -117 7356 7082 4 1060 207 0 0 0 chr12 62336122 62336145 -58921385 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1060 955 338 66 63 chr12 62336145 62336539 -58920991 - Lx8 LINE L1 -392 7081 6691 4 1060 27 49 0 0 chr12 62336795 62336836 -58920694 + AT_rich Low_complexity Low_complexity 1 41 0 4 1060 24 0 0 0 chr12 62337284 62337308 -58920222 + AT_rich Low_complexity Low_complexity 1 24 0 4 1060 3208 238 52 26 chr12 62337330 62338134 -58919396 + Lx5 LINE L1 6226 7050 0 4 1060 600 23 11 23 chr12 62338410 62338498 -58919032 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 4 1060 21 57 0 0 chr12 62338842 62338877 -58918653 + AT_rich Low_complexity Low_complexity 1 35 0 4 1060 302 273 85 32 chr12 62338917 62339150 -58918380 - L1MA6 LINE L1 -19 6281 6040 4 1060 876 217 15 0 chr12 62339293 62339496 -58918034 - L1_Mur3 LINE L1 -1367 4513 4308 4 1060 1294 35 12 0 chr12 62339506 62339678 -58917852 + (TC)n Simple_repeat Simple_repeat 2 175 0 4 1060 6230 218 35 32 chr12 62339713 62340678 -58916852 - L1_Mur3 LINE L1 -2874 3006 2058 4 1060 669 47 0 0 chr12 62340678 62340763 -58916767 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1060 6230 236 65 48 chr12 62340763 62342228 -58915302 - L1_Mur3 LINE L1 -3823 2057 547 4 1060 4732 139 58 19 chr12 62343098 62343970 -58913560 - RMER17A2 LTR ERVK 0 906 1 4 1060 1162 192 12 29 chr12 62344047 62344288 -58913242 - Lx2B LINE L1 -14 6986 6750 4 1060 940 239 10 5 chr12 62344289 62344491 -58913039 + RMER17B LTR ERVK 756 958 0 4 1060 472 155 30 18 chr12 62344814 62344978 -58912552 + (TA)n Simple_repeat Simple_repeat 1 166 0 4 1060 22 0 0 0 chr12 62345913 62345935 -58911595 + AT_rich Low_complexity Low_complexity 1 22 0 4 1060 2412 236 98 11 chr12 62346959 62347064 -58910466 - Lx5 LINE L1 -3 7047 6918 4 1060 1023 51 0 0 chr12 62347064 62347202 -58910328 + (TC)n Simple_repeat Simple_repeat 1 138 0 4 1060 480 35 0 0 chr12 62347202 62347259 -58910271 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1060 2412 236 98 11 chr12 62347259 62347725 -58909805 - Lx5 LINE L1 -133 6917 6426 4 1060 3234 154 130 8 chr12 62347866 62348468 -58909062 - RLTR33 LTR ERVK -3 675 1 4 1060 251 358 131 30 chr12 62348850 62349147 -58908383 + LTR40b LTR ERVL 136 462 0 4 1060 46 62 0 0 chr12 62349211 62349292 -58908238 + AT_rich Low_complexity Low_complexity 1 81 0 4 1060 1037 82 7 0 chr12 62349899 62350034 -58907496 + B1_Mm SINE Alu 2 137 -10 4 1060 251 384 34 68 chr12 62350483 62350631 -58906899 - B3A SINE B2 -16 182 40 4 1060 27 49 0 0 chr12 62350634 62350675 -58906855 + AT_rich Low_complexity Low_complexity 1 41 0 4 1060 231 114 0 0 chr12 62350683 62350718 -58906812 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1060 387 0 0 0 chr12 62350732 62350775 -58906755 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1060 4439 200 73 6 chr12 62351128 62352032 -58905498 + Lx5 LINE L1 6086 7050 0 4 1060 22 0 0 0 chr12 62353923 62353945 -58903585 + AT_rich Low_complexity Low_complexity 1 22 0 4 1060 1047 151 67 14 chr12 62354446 62354654 -58902876 + Lx4B LINE L1 4169 4387 -1499 4 1060 7256 187 21 8 chr12 62354653 62356321 -58901209 + Lx4B LINE L1 5369 7047 -11 4 1060 2277 253 46 11 chr12 62356603 62357622 -58899908 + L1_Mur3 LINE L1 892 1942 -3935 4 1060 887 307 36 29 chr12 62358425 62358975 -58898555 + L1MA5 LINE L1 5345 5898 -402 4 1060 590 239 86 25 chr12 62359043 62359206 -58898324 - Lx9 LINE L1 -278 7366 7194 4 1060 372 202 265 5 chr12 62359195 62359384 -58898146 + Lx9 LINE L1 7406 7643 -1 4 1060 1190 101 26 5 chr12 62359477 62359666 -58897864 + L1_Mus3 LINE L1 6440 6632 -6 4 1060 3852 98 0 11 chr12 62359753 62360297 -58897233 + L1_Mus1 LINE L1 6027 6564 -3 4 1060 219 36 0 0 chr12 62360991 62361019 -58896511 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1060 1539 206 14 87 chr12 62361328 62361694 -58895836 - ORR1B1 LTR MaLR 0 394 31 4 1060 360 0 0 0 chr12 62361694 62361734 -58895796 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1060 280 291 8 98 chr12 62361734 62361764 -58895766 - ORR1B1 LTR MaLR -316 30 1 4 1060 357 75 0 0 chr12 62362683 62362736 -58894794 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1060 405 39 0 0 chr12 62362736 62362787 -58894743 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1060 4757 74 5 9 chr12 62363145 62363789 -58893741 + L1Md_F2 LINE L1 5930 6570 -12 5 1060 3377 157 11 88 chr12 62363838 62364501 -58893029 + Lx4A LINE L1 6403 7014 -44 5 1060 387 0 0 0 chr12 62364510 62364553 -58892977 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1060 256 282 26 97 chr12 62365021 62365135 -58892395 - LFSINE_Vert SINE SINE -75 384 279 5 1060 22 80 0 0 chr12 62366528 62366578 -58890952 + AT_rich Low_complexity Low_complexity 1 50 0 5 1060 313 325 69 17 chr12 62366787 62366903 -58890627 + B4A SINE B4 41 162 -130 5 1060 25 31 0 0 chr12 62367496 62367528 -58890002 + AT_rich Low_complexity Low_complexity 1 32 0 5 1060 207 0 0 0 chr12 62367673 62367696 -58889834 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1060 1288 300 68 11 chr12 62368207 62368666 -58888864 + Lx6 LINE L1 6975 7459 -1 5 1060 462 120 0 0 chr12 62368707 62368782 -58888748 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1060 3732 71 30 4 chr12 62368804 62369357 -58888173 + L1Md_F2 LINE L1 6061 6582 0 5 1060 6222 52 1 3 chr12 62369438 62370221 -58887309 + L1Md_F2 LINE L1 4804 5585 -298 5 1060 8160 41 0 1 chr12 62370222 62371244 -58886286 + L1Md_F2 LINE L1 5587 6582 0 5 1060 252 0 0 0 chr12 62371760 62371788 -58885742 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1060 368 170 39 39 chr12 62371946 62372050 -58885480 + Tigger5 DNA MER2_type 2135 2238 -168 5 1060 637 277 26 47 chr12 62372079 62372318 -58885212 + MER47B DNA MER2_type 217 417 -1 5 1060 708 294 8 4 chr12 62372587 62372826 -58884704 - L1_Mur3 LINE L1 -3102 2778 2539 5 1060 1276 251 43 77 chr12 62372837 62373059 -58884471 - ORR1C2 LTR MaLR 0 384 155 5 1060 2676 78 70 0 chr12 62373059 62373443 -58884087 + RLTR10A LTR ERVK 1 411 0 5 1060 1276 251 43 77 chr12 62373443 62373612 -58883918 - ORR1C2 LTR MaLR -230 154 6 5 1060 629 299 47 26 chr12 62373646 62373705 -58883825 - L1_Mur3 LINE L1 -3392 2488 2428 5 1060 1900 189 32 0 chr12 62373705 62374085 -58883445 + ORR1B1 LTR MaLR 1 392 -2 5 1060 629 299 47 26 chr12 62374085 62374368 -58883162 - L1_Mur3 LINE L1 -3453 2427 2140 5 1060 233 385 57 0 chr12 62374839 62374961 -58882569 - MER76 LTR ERVL -560 131 3 5 1060 396 0 0 0 chr12 62374972 62375016 -58882514 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1060 216 97 0 0 chr12 62375230 62375261 -58882269 + (GAA)n Simple_repeat Simple_repeat 1 31 0 5 1060 370 341 58 47 chr12 62376362 62376553 -58880977 + B3A SINE B2 2 194 -4 5 1060 11936 195 24 210 chr12 62376844 62383468 -58874062 + Lx4B LINE L1 788 6117 -941 5 1060 517 264 26 74 chr12 62383463 62383694 -58873836 + Lx2B LINE L1 6685 6999 -59 5 1060 519 17 0 0 chr12 62383727 62383787 -58873743 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1060 250 250 12 0 chr12 62384327 62384411 -58873119 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1060 598 279 70 28 chr12 62384650 62384945 -58872585 + Lx7 LINE L1 5556 5828 -1868 5 1060 577 345 52 8 chr12 62385187 62385438 -58872092 + Lx8 LINE L1 6097 6358 -1115 5 1060 904 288 26 87 chr12 62385456 62385836 -58871694 - ORR1D1 LTR MaLR -17 357 1 5 1060 1095 320 63 60 chr12 62385995 62386566 -58870964 + RMER15 LTR ERVL 3 575 0 5 1060 722 289 118 43 chr12 62386567 62386914 -58870616 + Lx8 LINE L1 6534 6906 -567 5 1060 266 265 117 48 chr12 62386990 62387093 -58870437 + Lx8 LINE L1 7006 7115 -358 5 1060 588 29 0 0 chr12 62387386 62387456 -58870074 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1060 284 70 0 23 chr12 62387716 62387760 -58869770 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 5 1060 878 200 0 0 chr12 62387762 62387912 -58869618 - Lx6 LINE L1 -746 6714 6565 5 1060 1327 185 27 12 chr12 62387934 62388191 -58869339 - Lx4A LINE L1 0 7058 6798 5 1060 4995 165 38 8 chr12 62388191 62389095 -58868435 + Lx4A LINE L1 5747 6677 -381 5 1060 1803 303 49 22 chr12 62389095 62389729 -58867801 - Lx6 LINE L1 -880 6580 5930 5 1060 1184 240 116 23 chr12 62389719 62390115 -58867415 - Lx6 LINE L1 -238 5642 5210 5 132 2956 21 0 0 chr12 62390122 62390459 -58867071 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1061 7307 27 2 6 chr12 62390459 62391314 -58866216 - IAPEz-int LTR ERVK 0 6481 5630 5 1061 25356 29 18 13 chr12 62391300 62394354 -58863176 - IAPEz-int LTR ERVK -3405 3076 8 5 1061 2956 21 0 0 chr12 62394354 62394691 -58862839 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1061 1936 213 8 8 chr12 62394691 62395075 -58862455 - Lx4B LINE L1 -63 6995 6612 5 1061 1240 179 17 0 chr12 62395071 62395311 -58862219 - Lx6 LINE L1 -1715 4165 3922 5 1061 1282 173 50 9 chr12 62395314 62395670 -58861860 - Lx6 LINE L1 -2461 3419 3049 5 1061 2562 167 8 6 chr12 62396031 62396501 -58861029 - L1_Mur2 LINE L1 -500 5377 4907 5 1061 2113 203 52 59 chr12 62396500 62397024 -58860506 + Lx2 LINE L1 6478 6997 0 5 1061 180 0 0 0 chr12 62399877 62399897 -58857633 + (TTTTTA)n Simple_repeat Simple_repeat 1 20 0 5 1061 30 0 0 0 chr12 62401304 62401334 -58856196 + AT_rich Low_complexity Low_complexity 1 30 0 5 1061 400 296 88 50 chr12 62401450 62401631 -58855899 + B3A SINE B2 9 196 -2 5 1061 7088 63 2 2 chr12 62401791 62402712 -58854818 - L1Md_F2 LINE L1 -12 6570 5675 5 1061 694 103 8 8 chr12 62403338 62403455 -58854075 - Lx LINE L1 -2 6652 6536 5 1061 1552 231 59 15 chr12 62403466 62403874 -58853656 - Lx6 LINE L1 -597 6863 6438 5 1061 1004 178 7 69 chr12 62403897 62403939 -58853591 + L1_Mur3 LINE L1 3047 3080 -2800 5 1061 1414 80 0 5 chr12 62403939 62404128 -58853402 + B2_Mm2 SINE B2 1 188 -7 5 1061 1004 178 7 69 chr12 62404128 62404362 -58853168 + L1_Mur3 LINE L1 3081 3306 -2574 5 1061 7444 203 67 50 chr12 62404372 62406769 -58850761 - RMER3D-int LTR ERVK -24 2818 1 5 1061 718 267 23 28 chr12 62407015 62407231 -58850299 - B3 SINE B2 0 216 2 5 1061 183 129 0 0 chr12 62408908 62408939 -58848591 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 5 1061 306 0 0 0 chr12 62410155 62410189 -58847341 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1061 2765 113 2 19 chr12 62411522 62411656 -58845874 + MTB_Mm LTR MaLR 1 133 -274 5 1061 3954 105 20 123 chr12 62411656 62412493 -58845037 + RMER17A LTR ERVK 1 751 0 5 1061 2765 113 2 19 chr12 62412493 62412772 -58844758 + MTB_Mm LTR MaLR 134 407 0 5 1061 1765 183 13 70 chr12 62413875 62414262 -58843268 + ORR1B2 LTR MaLR 3 367 0 5 1061 497 147 0 10 chr12 62415336 62415432 -58842098 + CT-rich Low_complexity Low_complexity 4 98 0 5 1061 1045 292 81 23 chr12 62415819 62416253 -58841277 + MER67C LTR ERV1 14 472 -239 5 1061 1201 298 102 40 chr12 62416310 62416828 -58840702 - Lx5 LINE L1 -18 7032 6483 5 1061 499 275 119 30 chr12 62416864 62417100 -58840430 - Lx6 LINE L1 -1183 6277 6021 5 1061 4452 82 0 32 chr12 62419090 62419718 -58837812 + L1_Mus2 LINE L1 5958 6565 -1 5 1061 790 60 17 8 chr12 62419863 62419980 -58837550 + (TTTTC)n Simple_repeat Simple_repeat 1 118 0 5 1061 483 100 0 0 chr12 62419981 62420051 -58837479 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 5 1061 1725 191 8 16 chr12 62420349 62420721 -58836809 + Lx LINE L1 6286 6654 0 5 1061 194 128 0 25 chr12 62421659 62421699 -58835831 + (CATA)n Simple_repeat Simple_repeat 1 39 0 5 1061 570 198 0 0 chr12 62421713 62421890 -58835640 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 5 1061 234 179 29 15 chr12 62422146 62422214 -58835316 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1061 640 298 37 5 chr12 62422223 62422412 -58835118 - B3A SINE B2 -1 197 3 5 1061 333 0 0 0 chr12 62422458 62422495 -58835035 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1061 183 42 0 0 chr12 62424226 62424250 -58833280 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1061 688 89 0 43 chr12 62426600 62426717 -58830813 + Lx LINE L1 6536 6647 -7 5 1061 4967 105 8 13 chr12 62426725 62427432 -58830098 - L1_Mus1 LINE L1 -24 6543 5840 5 1061 411 21 0 0 chr12 62427434 62427482 -58830048 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 5 1061 3154 191 17 33 chr12 62427482 62428171 -58829359 + L1_Mur2 LINE L1 3658 4335 -1542 5 1061 236 191 30 45 chr12 62428195 62428261 -58829269 + CT-rich Low_complexity Low_complexity 4 68 0 5 1061 26 0 0 0 chr12 62429215 62429241 -58828289 + AT_rich Low_complexity Low_complexity 1 26 0 5 1061 1082 89 7 0 chr12 62429252 62429398 -58828132 + B1_Mm SINE Alu 1 147 0 5 1061 187 274 93 21 chr12 62430568 62430665 -58826865 - L2 LINE L2 -3103 316 213 5 1061 405 39 0 0 chr12 62430755 62430806 -58826724 + (TAA)n Simple_repeat Simple_repeat 1 51 0 5 1061 245 128 21 0 chr12 62430916 62430963 -58826567 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1061 273 300 46 0 chr12 62430983 62431113 -58826417 + (TATATG)n Simple_repeat Simple_repeat 2 137 0 5 1061 235 115 15 62 chr12 62431163 62431228 -58826302 + T-rich Low_complexity Low_complexity 1 62 0 5 1061 1135 75 7 0 chr12 62431228 62431374 -58826156 - B1_Mus2 SINE Alu 0 147 1 5 1061 573 288 21 7 chr12 62431382 62431522 -58826008 - B1_Mur2 SINE Alu -2 147 6 5 1061 195 342 27 0 chr12 62434522 62434595 -58822935 + MER5A DNA MER1_type 59 133 -56 5 1061 21 36 0 0 chr12 62435713 62435741 -58821789 + AT_rich Low_complexity Low_complexity 1 28 0 5 1061 649 340 34 43 chr12 62436008 62436450 -58821080 + Lx9 LINE L1 6879 7448 -196 5 1061 640 272 160 51 chr12 62437837 62438105 -58819425 - MTD LTR MaLR -13 406 109 5 1061 332 137 0 0 chr12 62438105 62438156 -58819374 + B1_Mus1 SINE Alu 2 52 -96 5 1061 3479 30 8 16 chr12 62438156 62438724 -58818806 + MERVL-int LTR ERVL 44 753 -4732 5 1061 1558 11 0 0 chr12 62438724 62438906 -58818624 + L1Md_A LINE L1 6401 6582 0 5 1061 417 354 12 6 chr12 62439478 62439640 -58817890 + RSINE1 SINE B4 3 165 0 5 1061 450 0 0 0 chr12 62440565 62440615 -58816915 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 5 1061 270 248 31 16 chr12 62440616 62440730 -58816800 + (TA)n Simple_repeat Simple_repeat 2 117 0 5 1061 264 30 0 0 chr12 62440730 62440763 -58816767 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1061 270 248 31 16 chr12 62440763 62440775 -58816755 + (TA)n Simple_repeat Simple_repeat 2 13 0 5 1061 784 319 67 8 chr12 62442726 62443086 -58814444 - Lx8 LINE L1 -493 6980 6600 5 1061 24 0 0 0 chr12 62443587 62443611 -58813919 + AT_rich Low_complexity Low_complexity 1 24 0 5 1061 25 0 0 0 chr12 62445119 62445144 -58812386 + AT_rich Low_complexity Low_complexity 1 25 0 5 1061 180 423 39 0 chr12 62445595 62445673 -58811857 - L2b LINE L2 -30 3345 3265 5 1061 1958 165 3 20 chr12 62445708 62446060 -58811470 + Lx LINE L1 6309 6654 0 6 1061 21 0 0 0 chr12 62446531 62446552 -58810978 + AT_rich Low_complexity Low_complexity 1 21 0 6 1061 2159 118 0 3 chr12 62448089 62448405 -58809125 - Lx LINE L1 -316 6338 6024 6 1061 2279 126 5 35 chr12 62448409 62448805 -58808725 + MusHAL1 LINE L1 880 1263 -1449 6 1061 2493 191 14 0 chr12 62448803 62449285 -58808245 - Lx LINE L1 -212 5671 5183 6 1061 5815 140 23 25 chr12 62449294 62450263 -58807267 + Lx LINE L1 5687 6653 -1 6 1061 5657 123 48 11 chr12 62450255 62450395 -58807135 + MusHAL1 LINE L1 1251 1397 -1315 6 1061 1578 96 45 12 chr12 62450395 62450637 -58806893 + L1Md_F2 LINE L1 6327 6576 -6 6 1061 5657 123 48 11 chr12 62450637 62451487 -58806043 + MusHAL1 LINE L1 1398 2276 -436 6 1061 3274 77 2 0 chr12 62451485 62451916 -58805614 - L1_Mus1 LINE L1 -541 6026 5595 6 1061 3910 79 24 0 chr12 62451916 62452448 -58805082 + L1_Mus1 LINE L1 6021 6565 -2 6 1061 2158 176 33 0 chr12 62452474 62452854 -58804676 + L1_Mur2 LINE L1 3461 3849 -2028 6 1061 369 0 0 0 chr12 62452854 62452895 -58804635 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1061 2158 176 33 0 chr12 62452895 62452935 -58804595 + L1_Mur2 LINE L1 3850 3894 -1983 6 1061 25 31 0 0 chr12 62453027 62453059 -58804471 + AT_rich Low_complexity Low_complexity 1 32 0 6 1061 405 177 0 0 chr12 62453119 62453232 -58804298 + GA-rich Low_complexity Low_complexity 2 114 0 6 1061 25 31 0 0 chr12 62453314 62453346 -58804184 + AT_rich Low_complexity Low_complexity 1 32 0 6 1061 534 31 0 0 chr12 62453733 62453797 -58803733 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1061 21 36 0 0 chr12 62453997 62454025 -58803505 + AT_rich Low_complexity Low_complexity 1 28 0 6 1061 22 35 0 0 chr12 62455800 62455829 -58801701 + AT_rich Low_complexity Low_complexity 1 29 0 6 1061 6122 75 1 40 chr12 62455986 62456330 -58801200 - L1_Mm LINE L1 -2929 2954 2623 6 1061 3035 44 0 10 chr12 62456330 62456717 -58800813 + L1Md_F2 LINE L1 6187 6569 -13 6 1061 6122 75 1 40 chr12 62456717 62457265 -58800265 - L1_Mm LINE L1 -3261 2622 2097 6 1061 5596 97 24 1 chr12 62457262 62458061 -58799469 + L1Md_F2 LINE L1 5766 6582 0 6 1061 33 0 0 0 chr12 62458172 62458205 -58799325 + AT_rich Low_complexity Low_complexity 1 33 0 6 1061 7651 122 31 66 chr12 62458205 62460415 -58797115 + Lx3A LINE L1 4838 6977 -4 6 1061 186 133 0 0 chr12 62460418 62460448 -58797082 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1061 185 303 45 0 chr12 62461543 62461609 -58795921 - L2a LINE L2 -74 3352 3284 6 1061 564 42 0 0 chr12 62461759 62461830 -58795700 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 6 1061 423 0 0 0 chr12 62461947 62461994 -58795536 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1061 401 375 90 0 chr12 62461997 62462141 -58795389 - RSINE1 SINE B4 -8 157 1 6 1061 1735 306 45 39 chr12 62462218 62462879 -58794651 + Lx6 LINE L1 6785 7449 -11 6 1061 33 56 0 0 chr12 62463736 62463790 -58793740 + AT_rich Low_complexity Low_complexity 1 54 0 6 1061 41136 7 1 2 chr12 62464497 62471271 -58786259 - L1Md_A LINE L1 0 6582 1 6 1061 884 320 56 39 chr12 62472470 62472808 -58784722 + ORR1E-int LTR MaLR 36 379 -991 6 1061 2536 174 29 13 chr12 62472920 62473744 -58783786 + MusHAL1 LINE L1 277 1106 -2453 6 1061 384 22 0 0 chr12 62473744 62473789 -58783741 + (TAA)n Simple_repeat Simple_repeat 1 45 0 6 1061 1829 162 53 0 chr12 62473789 62473889 -58783641 + MusHAL1 LINE L1 1107 1223 -2336 6 1061 35365 53 4 17 chr12 62473889 62479154 -58778376 + L1Md_F LINE L1 396 5587 -296 6 1061 8040 35 15 18 chr12 62479154 62480152 -58777378 + L1Md_A LINE L1 5588 6582 0 6 1061 35365 183 2452 12 chr12 62480152 62481301 -58776229 + L1Md_F LINE L1 5588 5595 -288 6 1061 778 157 13 7 chr12 62481303 62481457 -58776073 + GA-rich Low_complexity Low_complexity 3 157 0 6 1061 228 200 0 0 chr12 62481462 62481512 -58776018 + G-rich Low_complexity Low_complexity 3 52 0 6 1061 1604 152 0 26 chr12 62481520 62481545 -58775985 + MusHAL1 LINE L1 2511 2531 -1028 6 1061 719 60 20 0 chr12 62481545 62481645 -58775885 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 6 1061 1604 152 0 26 chr12 62481645 62481923 -58775607 + MusHAL1 LINE L1 2532 2806 -753 6 1061 7951 159 24 2 chr12 62481924 62483295 -58774235 + Lx2B LINE L1 5596 6996 -4 6 1061 1760 312 67 71 chr12 62483310 62484245 -58773285 + ORR1E-int LTR MaLR 422 1353 -17 6 1061 667 276 193 77 chr12 62484262 62484599 -58772931 + ORR1E LTR MaLR 3 378 0 6 1061 301 252 126 0 chr12 62484848 62484951 -58772579 + MER110-int LTR ERV1 2404 2519 -2128 6 1061 388 242 6 11 chr12 62485431 62485611 -58771919 + CT-rich Low_complexity Low_complexity 1 179 0 6 1061 339 65 0 0 chr12 62485611 62485657 -58771873 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1061 230 366 7 58 chr12 62486220 62486359 -58771171 - MLT1B LTR MaLR 0 390 259 6 1061 186 118 0 0 chr12 62486952 62486986 -58770544 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1061 539 308 161 17 chr12 62486990 62487281 -58770249 - Lx9 LINE L1 -221 7423 7091 6 1061 598 231 91 100 chr12 62487286 62487527 -58770003 + RLTR14 LTR ERV1 1 239 -143 6 1061 23 54 0 0 chr12 62487903 62487940 -58769590 + AT_rich Low_complexity Low_complexity 1 37 0 6 1061 327 216 0 22 chr12 62488625 62488715 -58768815 + RLTR14-int LTR ERV1 831 918 -4399 6 1061 261 299 20 10 chr12 62489691 62489789 -58767741 + RLTR6-int LTR ERV1 5188 5286 -2492 6 1061 225 0 0 0 chr12 62490343 62490368 -58767162 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1061 1903 108 33 20 chr12 62491261 62491564 -58765966 + IAPLTR2b LTR ERVK 1 307 -20 6 1061 766 265 170 32 chr12 62492134 62492478 -58765052 + RMER1B Other Other 275 721 -345 6 1061 556 209 70 53 chr12 62492472 62492659 -58764871 + RMER1A Other Other 837 1026 -4 6 1061 270 367 0 0 chr12 62492945 62493043 -58764487 - PB1D10 SINE Alu -7 110 13 6 1061 22 0 0 0 chr12 62493296 62493318 -58764212 + AT_rich Low_complexity Low_complexity 1 22 0 6 1061 423 0 0 0 chr12 62493524 62493571 -58763959 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 6 1061 482 356 52 30 chr12 62493595 62493925 -58763605 - Lx8 LINE L1 -160 7313 6977 6 1061 1066 233 57 57 chr12 62493925 62494221 -58763309 + ORR1D1 LTR MaLR 1 296 -78 6 1061 261 212 86 12 chr12 62494222 62494303 -58763227 - Lx8 LINE L1 -538 6935 6849 6 1061 22 56 0 0 chr12 62496060 62496096 -58761434 + AT_rich Low_complexity Low_complexity 1 36 0 6 1061 284 266 16 0 chr12 62496775 62496839 -58760691 + MER31B LTR ERV1 3 67 -399 6 1061 34 24 0 0 chr12 62497321 62497362 -58760168 + AT_rich Low_complexity Low_complexity 1 41 0 6 1061 180 0 0 0 chr12 62497363 62497383 -58760147 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1061 1130 103 6 0 chr12 62497383 62497539 -58759991 - B2_Mm2 SINE B2 -37 158 2 6 1061 494 267 119 7 chr12 62497943 62498094 -58759436 - ID_B1 SINE B4 -5 219 52 6 1061 251 333 9 38 chr12 62498207 62498301 -58759229 + MTE2b LTR MaLR 11 101 -278 6 1061 500 348 10 60 chr12 62498301 62498500 -58759030 + B3A SINE B2 2 190 -8 6 1061 365 290 152 21 chr12 62498616 62498859 -58758671 + Lx8 LINE L1 6168 6442 -1031 6 1061 1320 268 40 19 chr12 62498859 62499285 -58758245 - RLTR22_Mur LTR ERVK -1413 435 1 6 1061 575 338 75 15 chr12 62499285 62499711 -58757819 + Lx8 LINE L1 6542 7026 -618 6 1061 1243 275 10 14 chr12 62499712 62500000 -58757530 - ORR1D1 LTR MaLR -2 372 86 6 1061 278 296 12 0 chr12 62500001 62500082 -58757448 - ORR1D1 LTR MaLR -290 84 3 1 1061 5757 156 8 29 chr12 62500558 62500861 -58756669 - Lx2 LINE L1 -429 6568 6267 2 1061 1428 209 31 65 chr12 62500861 62501275 -58756255 + RLTR9D LTR ERVK 1 400 -3 3 1061 5757 166 7 22 chr12 62501275 62502208 -58755322 - Lx2 LINE L1 -731 6266 5354 2 1061 1602 210 6 11 chr12 62502208 62502555 -58754975 + Lx2 LINE L1 6653 6997 0 4 1061 895 153 0 22 chr12 62502555 62502735 -58754795 + GA-rich Low_complexity Low_complexity 3 178 0 5 1061 382 248 56 98 chr12 62502773 62502916 -58754614 + MTE2a LTR MaLR 219 355 -24 6 1061 24 0 0 0 chr12 62503273 62503297 -58754233 + AT_rich Low_complexity Low_complexity 1 24 0 7 1061 978 304 70 26 chr12 62503524 62503909 -58753621 - MTD LTR MaLR 0 419 18 8 1061 35 0 0 0 chr12 62504093 62504128 -58753402 + AT_rich Low_complexity Low_complexity 1 35 0 9 1061 295 364 53 11 chr12 62504372 62504561 -58752969 + LTR40b LTR ERVL 161 357 -105 1 1061 338 271 109 14 chr12 62504954 62505175 -58752355 - L1MC LINE L1 -2192 3954 3713 1 1061 253 308 64 89 chr12 62505176 62505333 -58752197 + L2c LINE L2 3232 3384 -3 1 1061 1110 322 68 49 chr12 62506204 62506279 -58751251 + Lx8 LINE L1 6744 6818 -655 1 1061 306 0 0 0 chr12 62506279 62506313 -58751217 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1 1061 1110 322 68 49 chr12 62506313 62506953 -58750577 + Lx8 LINE L1 6819 7473 0 1 1061 280 256 11 58 chr12 62507682 62507769 -58749761 - MTEb LTR MaLR -2 377 295 1 1061 261 98 0 0 chr12 62508054 62508095 -58749435 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1061 1017 228 64 5 chr12 62508104 62508324 -58749206 - Lx5 LINE L1 -108 6942 6710 1 1061 488 263 130 98 chr12 62508334 62508549 -58748981 - RMER12 LTR ERVK -107 1215 994 1 1061 4824 180 12 5 chr12 62508569 62509446 -58748084 - RMER12 LTR ERVK -419 903 20 1 1061 431 314 79 18 chr12 62509763 62510143 -58747387 - L1MA4 LINE L1 -160 6140 5738 1 1061 369 0 0 0 chr12 62510660 62510701 -58746829 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1061 189 0 0 0 chr12 62510771 62510792 -58746738 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1061 385 340 0 0 chr12 62510909 62511006 -58746524 + ID_B1 SINE B4 118 214 -10 2 1061 715 183 27 40 chr12 62511174 62511322 -58746208 + B1_Mus1 SINE Alu 2 147 -1 2 1061 225 178 0 0 chr12 62511901 62511946 -58745584 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1061 195 143 114 0 chr12 62512178 62512213 -58745317 - L3 LINE CR1 -3050 1439 1401 2 1061 204 97 0 0 chr12 62512226 62512257 -58745273 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1061 750 320 67 32 chr12 62512334 62512679 -58744851 - MTE2b LTR MaLR -13 366 10 2 1061 318 26 0 0 chr12 62513250 62513289 -58744241 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1061 298 300 80 0 chr12 62513290 62513390 -58744140 - ID_B1 SINE B4 -8 216 109 2 1061 32 26 0 0 chr12 62513673 62513712 -58743818 + AT_rich Low_complexity Low_complexity 1 39 0 3 1061 22 0 0 0 chr12 62513782 62513804 -58743726 + AT_rich Low_complexity Low_complexity 1 22 0 3 1061 627 81 0 0 chr12 62514687 62514773 -58742757 + (GAGAA)n Simple_repeat Simple_repeat 4 89 0 3 1061 261 291 147 16 chr12 62515478 62515607 -58741923 + MLT1F1 LTR MaLR 328 473 -96 3 1061 527 340 16 21 chr12 62515684 62515876 -58741654 + B3 SINE B2 1 191 -25 3 1061 716 296 97 18 chr12 62516002 62516229 -58741301 + MTD LTR MaLR 8 252 -167 3 1061 1150 83 77 0 chr12 62517516 62517685 -58739845 - L1_Mus1 LINE L1 -1 6566 6385 3 1061 2783 62 0 19 chr12 62517685 62518045 -58739485 + L1_Mus1 LINE L1 6024 6376 -190 3 1061 666 268 11 12 chr12 62518142 62518382 -58739148 - Lx7 LINE L1 -235 5933 5663 3 1061 276 263 0 57 chr12 62518848 62518953 -58738577 - Lx9 LINE L1 -6 7638 7540 3 1061 602 85 11 0 chr12 62519068 62519162 -58738368 + (TGG)n Simple_repeat Simple_repeat 1 95 0 3 1061 342 0 0 0 chr12 62519162 62519200 -58738330 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1061 479 285 101 23 chr12 62519205 62519424 -58738106 - Lx9 LINE L1 -208 7436 7201 3 1061 47 53 0 0 chr12 62519583 62519658 -58737872 + AT_rich Low_complexity Low_complexity 1 75 0 4 1061 21 0 0 0 chr12 62520475 62520496 -58737034 + AT_rich Low_complexity Low_complexity 1 21 0 4 1061 641 310 48 9 chr12 62520689 62520920 -58736610 + RMER15 LTR ERVL 336 575 0 4 1062 23 33 0 0 chr12 62521441 62521471 -58736059 + AT_rich Low_complexity Low_complexity 1 30 0 4 1062 396 40 0 0 chr12 62522330 62522380 -58735150 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1062 248 374 22 0 chr12 62523059 62523150 -58734380 - PB1D10 SINE Alu -4 113 21 4 1062 570 29 0 0 chr12 62523701 62523769 -58733761 + (TATG)n Simple_repeat Simple_repeat 2 69 0 4 1062 413 221 148 85 chr12 62524161 62524361 -58733169 - B3A SINE B2 -5 193 1 4 1062 351 149 0 0 chr12 62524382 62524456 -58733074 + (T)n Simple_repeat Simple_repeat 1 74 0 4 1062 330 141 16 0 chr12 62524504 62524568 -58732962 - Lx LINE L1 -7 6647 6583 5 1062 1991 150 35 3 chr12 62524571 62524912 -58732618 + Lx2 LINE L1 6646 6997 0 5 1062 23 54 0 0 chr12 62525804 62525841 -58731689 + AT_rich Low_complexity Low_complexity 1 37 0 5 1062 24 67 0 0 chr12 62525873 62525918 -58731612 + AT_rich Low_complexity Low_complexity 1 45 0 5 1062 17338 177 18 81 chr12 62527145 62528658 -58728872 + Lx LINE L1 1451 2994 -2892 5 1062 3441 87 4 0 chr12 62528658 62529118 -58728412 + L1_Mus1 LINE L1 6106 6567 0 5 1062 17338 177 18 81 chr12 62529118 62530579 -58726951 + Lx LINE L1 2995 4174 -1712 5 1062 1815 84 0 27 chr12 62530579 62530835 -58726695 + L1_Mus1 LINE L1 6317 6565 -2 5 1062 17338 150 18 54 chr12 62530835 62532000 -58725530 + Lx LINE L1 4166 5329 -1325 5 1062 720 81 0 0 chr12 62532000 62532099 -58725431 - B1_Mm SINE Alu -48 99 1 5 1062 17338 150 18 54 chr12 62532099 62532965 -58724565 + Lx LINE L1 5330 6196 -458 5 1062 783 124 57 73 chr12 62532946 62533138 -58724392 + Lx LINE L1 6464 6652 -2 5 1062 23 0 0 0 chr12 62533911 62533934 -58723596 + AT_rich Low_complexity Low_complexity 1 23 0 5 1062 1035 207 74 0 chr12 62534279 62534496 -58723034 + Lx4A LINE L1 6824 7056 -2 5 1062 28 0 0 0 chr12 62534497 62534525 -58723005 + AT_rich Low_complexity Low_complexity 1 28 0 6 1062 444 273 177 22 chr12 62535121 62535432 -58722098 + MER45B DNA Tip100 641 999 -41 6 1062 31 82 0 0 chr12 62535946 62536019 -58721511 + AT_rich Low_complexity Low_complexity 1 73 0 6 1062 1007 256 15 33 chr12 62536519 62536831 -58720699 - Lx2B LINE L1 -55 7003 6599 6 1062 1379 191 27 0 chr12 62536833 62537090 -58720440 + Lx4B LINE L1 6297 6560 -498 6 1062 25 31 0 0 chr12 62537240 62537272 -58720258 + AT_rich Low_complexity Low_complexity 1 32 0 6 1062 201 211 0 0 chr12 62537684 62537736 -58719794 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1062 233 211 135 0 chr12 62537990 62538042 -58719488 - RSINE1 SINE B4 -103 62 4 6 1062 299 297 41 11 chr12 62538181 62538362 -58719168 + L1PB4 LINE L1 5709 5963 -337 6 1062 2601 204 26 38 chr12 62539186 62539798 -58717732 + Lx5 LINE L1 6004 6608 -442 6 1062 11660 53 0 0 chr12 62539802 62541265 -58716265 - L1Md_F2 LINE L1 -490 5393 3931 7 1062 1774 51 0 0 chr12 62541262 62541477 -58716053 + L1Md_F2 LINE L1 5372 5586 -297 7 1062 7630 55 21 2 chr12 62541478 62542454 -58715076 + L1Md_F2 LINE L1 5588 6582 0 7 1062 1081 108 0 0 chr12 62542623 62542781 -58714749 + B2_Mm2 SINE B2 1 158 -37 7 1062 372 43 0 0 chr12 62542787 62542833 -58714697 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 7 1062 3371 136 49 19 chr12 62542834 62543402 -58714128 - Lx2 LINE L1 -67 6930 6346 7 1062 2240 154 110 2 chr12 62543623 62544032 -58713498 + RMER6B LTR ERVK 1 453 -8 7 1062 441 0 0 0 chr12 62544032 62544081 -58713449 + (CATA)n Simple_repeat Simple_repeat 2 50 0 7 1062 3762 192 46 6 chr12 62544111 62544892 -58712638 + MYSERV6-int LTR ERVK 57 868 -8091 7 1062 549 172 10 10 chr12 62544879 62544979 -58712551 + MYSERV6-int LTR ERVK 5169 5268 -3691 7 1062 646 283 75 0 chr12 62544979 62545152 -58712378 - RMER1B Other Other -527 539 354 7 1062 1023 300 170 31 chr12 62545129 62545587 -58711943 - RMER1B Other Other -499 567 46 7 1062 447 19 0 0 chr12 62546103 62546155 -58711375 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 7 1062 657 194 7 52 chr12 62546380 62546516 -58711014 - RSINE1 SINE B4 -24 141 12 8 1062 28 48 0 0 chr12 62547503 62547545 -58709985 + AT_rich Low_complexity Low_complexity 1 42 0 8 1062 304 301 109 7 chr12 62548494 62548631 -58708899 - MLT1A0 LTR MaLR -147 218 68 8 1062 937 174 40 50 chr12 62549090 62549423 -58708107 + RMER17C LTR ERVK 16 439 -519 8 1062 295 214 80 45 chr12 62549542 62549630 -58707900 + MLT1A1 LTR MaLR 300 390 -18 8 1062 2584 133 196 4 chr12 62549819 62550323 -58707207 + MT2B LTR ERVL 1 601 0 8 1062 306 235 59 30 chr12 62550404 62550505 -58707025 - MLT1A LTR MaLR -2 372 269 8 1062 29 60 0 0 chr12 62551366 62551416 -58706114 + AT_rich Low_complexity Low_complexity 1 50 0 8 1062 21 0 0 0 chr12 62551985 62552006 -58705524 + AT_rich Low_complexity Low_complexity 1 21 0 8 1062 3041 73 51 2 chr12 62552209 62552637 -58704893 + MTA_Mm-int LTR MaLR 650 1098 0 8 1062 3276 38 8 2 chr12 62552637 62553031 -58704499 + MTA_Mm LTR MaLR 1 396 0 8 1062 1913 194 42 17 chr12 62553645 62554055 -58703475 + MTC LTR MaLR 2 421 0 9 1062 195 42 0 0 chr12 62554260 62554284 -58703246 + (TA)n Simple_repeat Simple_repeat 2 25 0 9 1062 1051 276 79 27 chr12 62554843 62555212 -58702318 - Tigger1 DNA MER2_type -277 2141 1754 9 1062 4233 179 88 31 chr12 62555223 62556063 -58701467 + RLTR25B LTR ERVK 1 876 -152 9 1062 4608 121 70 13 chr12 62556063 62556834 -58700696 + Lx2A1 LINE L1 6187 7001 -7 9 1062 3835 164 94 35 chr12 62556834 62556965 -58700565 + RLTR25B LTR ERVK 877 1028 0 9 1062 896 276 196 33 chr12 62557097 62557581 -58699949 - RMER2 LTR ERV1 -4 563 1 9 1062 2701 145 72 121 chr12 62557593 62557748 -58699782 - RLTR19B LTR ERVK -2 713 549 9 1062 547 14 28 0 chr12 62557748 62557820 -58699710 + (CAAAC)n Simple_repeat Simple_repeat 2 75 0 9 1062 180 0 0 0 chr12 62557820 62557839 -58699691 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 9 1062 2701 145 72 121 chr12 62557839 62558310 -58699220 - RLTR19B LTR ERVK -167 548 118 9 1062 464 308 22 8 chr12 62558348 62558482 -58699048 - RSINE1 SINE B4 -29 136 1 9 1062 332 290 66 40 chr12 62558517 62558668 -58698862 - Tigger1 DNA MER2_type -810 1608 1454 9 1062 4571 87 17 91 chr12 62560551 62561362 -58696168 + RMER17A LTR ERVK 1 751 0 1 1062 198 0 0 0 chr12 62561516 62561538 -58695992 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 1 1062 24 0 0 0 chr12 62562314 62562338 -58695192 + AT_rich Low_complexity Low_complexity 1 24 0 1 1062 24 85 0 0 chr12 62562518 62562577 -58694953 + AT_rich Low_complexity Low_complexity 1 59 0 1 1062 419 297 86 0 chr12 62562577 62562705 -58694825 - B3 SINE B2 0 216 78 1 1062 565 299 13 46 chr12 62562740 62562891 -58694639 - B3A SINE B2 -52 146 1 1 1062 745 270 19 5 chr12 62562932 62563137 -58694393 - B3 SINE B2 -8 208 1 1 1062 24 0 0 0 chr12 62563173 62563197 -58694333 + AT_rich Low_complexity Low_complexity 1 24 0 1 1062 5431 105 1 10 chr12 62563293 62563317 -58694213 - L1_Mus1 LINE L1 -194 6373 6354 1 1062 431 97 0 0 chr12 62563317 62563389 -58694141 - L1Md_F2 LINE L1 -4 6578 6507 1 1062 8232 111 8 15 chr12 62563389 62565149 -58692381 - L1_Mus1 LINE L1 -214 6353 4599 1 1062 725 257 35 0 chr12 62565168 62565339 -58692191 - Lx7 LINE L1 -338 7358 7182 1 1062 862 253 156 8 chr12 62566334 62566713 -58690817 - L1MC3 LINE L1 -53 7732 7298 1 1062 591 279 86 113 chr12 62566716 62567052 -58690478 - ORR1E LTR MaLR 0 359 33 1 1062 344 333 76 45 chr12 62567113 62567311 -58690219 - L1MC3 LINE L1 -551 7234 7031 1 1062 323 329 79 55 chr12 62567378 62567632 -58689898 - L1MC3 LINE L1 -1131 6654 6395 1 1062 241 208 0 0 chr12 62567632 62567680 -58689850 + MLT1C LTR MaLR 1 48 -419 1 1062 411 205 89 57 chr12 62568217 62568260 -58689270 + MLT1C LTR MaLR 49 91 -376 1 1062 2812 59 187 2 chr12 62568260 62568667 -58688863 + RLTR45 LTR ERVK 1 482 0 1 1062 411 205 89 57 chr12 62568667 62568747 -58688783 + MLT1C LTR MaLR 92 176 -291 1 1062 231 293 33 33 chr12 62568905 62569025 -58688505 - L1MC3 LINE L1 -1574 6211 6092 1 1062 284 314 61 103 chr12 62569232 62569445 -58688085 - MTEb LTR MaLR -8 371 168 1 1062 269 295 53 9 chr12 62569660 62569773 -58687757 + PB1D9 SINE Alu 3 120 0 1 1062 259 290 74 9 chr12 62569796 62569904 -58687626 - L1MC3 LINE L1 -2138 5647 5533 1 1062 1236 43 12 0 chr12 62570019 62570180 -58687350 - L1Md_F2 LINE L1 -2 6580 6418 1 1062 2861 87 19 5 chr12 62570378 62570793 -58686737 - BGLII LTR ERVK 0 421 1 1 1062 728 281 59 34 chr12 62571119 62571440 -58686090 - RLTR12B LTR ERVK -199 329 1 1 1062 328 279 108 0 chr12 62571440 62571491 -58686039 - L1M4 LINE L1 -903 5243 5191 1 1062 375 23 0 0 chr12 62571491 62571535 -58685995 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1062 328 290 193 7 chr12 62571535 62571711 -58685819 - L1M4 LINE L1 -956 5190 4960 1 1062 2625 120 28 79 chr12 62571870 62572378 -58685152 + RLTR45 LTR ERVK 1 482 0 1 1062 1826 189 148 15 chr12 62572399 62572873 -58684657 - RMER17B LTR ERVK 0 958 422 1 1062 1271 118 47 63 chr12 62572873 62573126 -58684404 - RMER17B LTR ERVK -657 249 1 1 1062 407 238 9 71 chr12 62573148 62573261 -58684269 + MT2A LTR ERVL 24 129 -404 1 1062 229 349 22 67 chr12 62573228 62573317 -58684213 + MT2B2 LTR ERVL 52 136 -448 1 1062 490 269 86 42 chr12 62573283 62573563 -58683967 + MT2A LTR ERVL 84 482 -11 1 1062 631 261 62 33 chr12 62574341 62574551 -58682979 - B3 SINE B2 0 216 1 1 1062 24 67 0 0 chr12 62575836 62575881 -58681649 + AT_rich Low_complexity Low_complexity 1 45 0 1 1062 24 0 0 0 chr12 62575985 62576009 -58681521 + AT_rich Low_complexity Low_complexity 1 24 0 1 1062 1711 174 52 13 chr12 62576009 62576202 -58681328 - RMER17C LTR ERVK -11 399 203 1 1062 1068 111 0 0 chr12 62576202 62576382 -58681148 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1062 1711 174 52 13 chr12 62576382 62576572 -58680958 - RMER17C LTR ERVK -208 202 1 1 1062 2568 125 16 28 chr12 62576787 62577214 -58680316 - Lx2 LINE L1 -8 6989 6568 1 1062 32 43 0 0 chr12 62577725 62577771 -58679759 + AT_rich Low_complexity Low_complexity 1 46 0 1 1062 2983 129 4 21 chr12 62578581 62579103 -58678427 + Lx2 LINE L1 1557 2069 -3814 1 1062 19027 136 15 1 chr12 62579101 62583187 -58674343 + Lx2 LINE L1 2850 6997 0 1 1062 194 103 0 0 chr12 62583782 62583811 -58673719 - L3 LINE CR1 -1828 2661 2633 1 1062 438 267 114 19 chr12 62584414 62584624 -58672906 - L1M2 LINE L1 -2224 3919 3690 1 1062 2646 218 10 62 chr12 62584679 62584771 -58672759 + RLTR40 LTR ERVK 1 93 -724 1 1062 290 26 26 0 chr12 62584771 62584810 -58672720 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1062 1115 52 0 0 chr12 62584810 62584945 -58672585 - B1_Mm SINE Alu -11 136 2 1 1062 2646 218 10 62 chr12 62584945 62585525 -58672005 + RLTR40 LTR ERVK 94 637 -180 1 1062 1308 167 6 8 chr12 62585525 62585776 -58671754 - ORR1A1 LTR MaLR 0 367 120 1 1062 613 229 7 7 chr12 62585889 62586030 -58671500 - Lx7 LINE L1 -1656 6040 5900 1 1062 531 158 17 9 chr12 62586030 62586145 -58671385 - L1_Mur3 LINE L1 -2523 3357 3242 1 1062 1170 212 45 4 chr12 62586154 62586400 -58671130 - Lx4A LINE L1 -12 7046 6791 1 1062 234 0 0 0 chr12 62586403 62586429 -58671101 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1062 1174 203 11 150 chr12 62586430 62586754 -58670776 - L1_Mur3 LINE L1 -2623 3257 2996 1 1062 211 71 48 0 chr12 62586754 62586796 -58670734 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1062 1174 203 11 150 chr12 62586796 62586918 -58670612 - L1_Mur3 LINE L1 -2885 2995 2874 1 1062 4016 171 73 36 chr12 62586907 62588478 -58669052 - Lx2 LINE L1 -2 6652 5140 1 1062 21 36 0 0 chr12 62589617 62589645 -58667885 + AT_rich Low_complexity Low_complexity 1 28 0 1 1062 228 367 148 38 chr12 62589849 62590166 -58667364 - LTR33 LTR ERVL -70 445 94 1 1062 207 162 0 0 chr12 62591369 62591406 -58666124 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1 1062 513 0 0 0 chr12 62591665 62591722 -58665808 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1062 223 315 53 53 chr12 62592258 62592409 -58665121 - ID_B1 SINE B4 -7 217 67 1 1062 40 21 0 0 chr12 62593683 62593730 -58663800 + AT_rich Low_complexity Low_complexity 1 47 0 1 1062 1429 328 42 41 chr12 62593974 62594664 -58662866 - Lx8 LINE L1 -30 7443 6753 1 1062 279 154 0 0 chr12 62594664 62594718 -58662812 - L1_Mm LINE L1 -468 5409 5356 1 1062 268 333 0 0 chr12 62594718 62594793 -58662737 + (CGTG)n Simple_repeat Simple_repeat 1 75 0 1 1062 262 246 31 0 chr12 62596069 62596134 -58661396 + ID4_ SINE ID 3 69 -14 1 1062 267 114 0 0 chr12 62597418 62597462 -58660068 + (CTG)n Simple_repeat Simple_repeat 1 44 0 1 1062 25 0 0 0 chr12 62597942 62597967 -58659563 + AT_rich Low_complexity Low_complexity 1 25 0 1 1062 400 271 118 6 chr12 62599209 62599541 -58657989 + L1M4b LINE L1 1937 2307 -4701 1 1062 5749 67 9 20 chr12 62599655 62600422 -58657108 - L1Md_F2 LINE L1 -12 6570 5812 1 1062 210 37 0 0 chr12 62600631 62600658 -58656872 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1062 308 287 50 34 chr12 62600937 62601056 -58656474 + L1M4b LINE L1 2784 2904 -4198 1 1062 662 306 21 52 chr12 62601065 62601234 -58656296 + B3A SINE B2 5 173 -25 1 1062 207 0 0 0 chr12 62601234 62601257 -58656273 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1062 662 306 21 52 chr12 62601257 62601280 -58656250 + B3A SINE B2 174 191 -7 1 1062 231 132 23 46 chr12 62601609 62601696 -58655834 + (TCTCTG)n Simple_repeat Simple_repeat 4 88 0 1 1062 489 17 0 0 chr12 62601697 62601755 -58655775 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1062 513 103 0 94 chr12 62601948 62602044 -58655486 + L1_Mur2 LINE L1 4343 4429 -1448 1 1062 401 117 0 16 chr12 62602032 62602093 -58655437 + L1_Mur2 LINE L1 4663 4722 -1155 1 1062 234 0 0 0 chr12 62602147 62602173 -58655357 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1062 6331 58 6 5 chr12 62602193 62603005 -58654525 + L1Md_F2 LINE L1 5765 6577 -5 1 1062 6781 142 24 7 chr12 62603015 62604928 -58652602 + Lx LINE L1 4718 6654 0 1 1062 3044 234 18 44 chr12 62606603 62607380 -58650150 + Lx7 LINE L1 6710 7466 -230 1 1062 678 81 5 0 chr12 62608080 62608178 -58649352 - L1_Mm LINE L1 -290 5590 5490 1 1062 4451 73 7 8 chr12 62608178 62608784 -58648746 + L1Md_F2 LINE L1 5978 6582 0 1 1062 5867 125 37 8 chr12 62608784 62610331 -58647199 - Lx4A LINE L1 -451 6607 4999 1 1062 39 22 0 0 chr12 62611633 62611679 -58645851 + AT_rich Low_complexity Low_complexity 1 46 0 1 1062 246 230 0 39 chr12 62611715 62611792 -58645738 - Lx6 LINE L1 -4 7456 7383 1 1062 307 176 14 0 chr12 62611877 62611951 -58645579 + B2_Mm2 SINE B2 120 194 -1 1 1062 3835 256 36 39 chr12 62611965 62612267 -58645263 - Lx7 LINE L1 -353 7343 7028 1 1062 201 39 0 0 chr12 62612267 62612293 -58645237 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1062 3835 256 36 39 chr12 62612293 62613010 -58644520 - Lx7 LINE L1 -669 7027 6328 1 1062 4356 195 39 26 chr12 62613021 62613324 -58644206 - RLTR25A LTR ERVK -3 1100 802 1 1062 252 0 0 0 chr12 62613324 62613352 -58644178 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1062 4356 195 39 26 chr12 62613352 62613990 -58643540 - RLTR25A LTR ERVK -302 801 149 1 1062 378 42 0 0 chr12 62613998 62614046 -58643484 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1062 2699 206 30 22 chr12 62614055 62614833 -58642697 - Lx7 LINE L1 -1564 6132 5332 1 1062 259 339 81 41 chr12 62615009 62615132 -58642398 + B3A SINE B2 16 143 -55 1 1062 486 70 0 0 chr12 62615155 62615226 -58642304 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1062 21 0 0 0 chr12 62615257 62615278 -58642252 + AT_rich Low_complexity Low_complexity 1 21 0 1 1062 268 297 65 40 chr12 62615285 62615495 -58642035 - L1MA6 LINE L1 -118 6182 5961 1 1062 573 42 0 0 chr12 62615988 62616060 -58641470 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1062 256 324 25 59 chr12 62616063 62616181 -58641349 - B4 SINE B4 -13 279 166 1 1062 312 299 94 81 chr12 62617801 62617961 -58639569 - B3 SINE B2 -53 163 2 1 1062 393 286 170 17 chr12 62618661 62618896 -58638634 + B4A SINE B4 4 274 -18 1 1062 600 101 0 0 chr12 62621234 62621323 -58636207 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1062 621 27 0 0 chr12 62621331 62621406 -58636124 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1062 225 62 62 0 chr12 62621530 62621578 -58635952 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 1 1062 282 56 0 0 chr12 62623291 62623327 -58634203 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1062 255 31 0 0 chr12 62623548 62623580 -58633950 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1062 206 118 0 0 chr12 62623716 62623750 -58633780 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1062 234 0 0 0 chr12 62624100 62624126 -58633404 + (CCG)n Simple_repeat Simple_repeat 2 27 0 1 1062 567 0 0 0 chr12 62624360 62624423 -58633107 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1062 224 239 0 0 chr12 62624796 62624842 -58632688 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1062 207 316 0 0 chr12 62625463 62625542 -58631988 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1062 474 65 0 0 chr12 62626025 62626087 -58631443 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1 1062 501 17 0 0 chr12 62626442 62626500 -58631030 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1062 497 115 11 0 chr12 62626612 62626699 -58630831 + (CCCCAG)n Simple_repeat Simple_repeat 2 89 0 2 1062 189 0 0 0 chr12 62627381 62627402 -58630128 + (CTG)n Simple_repeat Simple_repeat 3 23 0 2 1062 21 36 0 0 chr12 62628074 62628102 -58629428 + AT_rich Low_complexity Low_complexity 1 28 0 2 1062 827 144 0 7 chr12 62628587 62628741 -58628789 + GA-rich Low_complexity Low_complexity 2 154 0 2 1062 24 0 0 0 chr12 62630224 62630248 -58627282 + AT_rich Low_complexity Low_complexity 1 24 0 2 1062 1338 91 16 11 chr12 62630483 62630672 -58626858 - B2_Mm2 SINE B2 -3 192 3 2 1062 22 70 0 0 chr12 62631500 62631543 -58625987 + AT_rich Low_complexity Low_complexity 1 43 0 2 1062 218 136 0 64 chr12 62631722 62631769 -58625761 + A-rich Low_complexity Low_complexity 1 44 0 2 1062 227 263 0 0 chr12 62631885 62631942 -58625588 - B3 SINE B2 0 216 160 2 1062 254 269 0 56 chr12 62632346 62632417 -58625113 + MIR SINE MIR 79 145 -63 2 1062 406 73 0 0 chr12 62633804 62633859 -58623671 + L1Md_F3 LINE L1 6505 6559 -25 2 1062 309 363 100 102 chr12 62635420 62635840 -58621690 + MLT1H LTR MaLR 99 517 -32 2 1062 34 42 0 0 chr12 62636531 62636579 -58620951 + AT_rich Low_complexity Low_complexity 1 48 0 2 1062 24 53 0 0 chr12 62636765 62636803 -58620727 + AT_rich Low_complexity Low_complexity 1 38 0 2 1062 268 236 0 0 chr12 62636910 62636965 -58620565 + MIR SINE MIR 120 174 -88 2 1062 195 129 0 0 chr12 62637037 62637068 -58620462 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2 1062 180 0 0 0 chr12 62637227 62637247 -58620283 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1062 21 0 0 0 chr12 62637620 62637641 -58619889 + AT_rich Low_complexity Low_complexity 1 21 0 2 1062 705 87 0 0 chr12 62638285 62638400 -58619130 + (GA)n Simple_repeat Simple_repeat 2 116 0 2 1062 208 28 83 0 chr12 62639312 62639348 -58618182 + (CATAT)n Simple_repeat Simple_repeat 5 43 0 2 1062 222 231 0 0 chr12 62639576 62639628 -58617902 + T-rich Low_complexity Low_complexity 1 52 0 2 1062 1567 163 94 62 chr12 62639999 62640339 -58617191 - ORR1B2 LTR MaLR 0 367 17 2 1062 7697 72 7 1 chr12 62640364 62642086 -58615444 - L1Md_F2 LINE L1 -8 6574 4844 2 1062 245 30 0 29 chr12 62642086 62642120 -58615410 - ORR1B2 LTR MaLR -349 35 3 2 1062 459 35 0 0 chr12 62642153 62642210 -58615320 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1062 276 127 0 0 chr12 62642854 62642909 -58614621 + (CTA)n Simple_repeat Simple_repeat 2 56 0 2 1062 24 32 0 0 chr12 62643460 62643491 -58614039 + AT_rich Low_complexity Low_complexity 1 31 0 2 1062 218 170 0 41 chr12 62644189 62644238 -58613292 + A-rich Low_complexity Low_complexity 3 49 0 2 1062 280 282 0 133 chr12 62644412 62644547 -58612983 - PB1D10 SINE Alu 0 117 1 2 1062 213 154 0 0 chr12 62644618 62644657 -58612873 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 2 1062 243 0 0 0 chr12 62645723 62645750 -58611780 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1062 616 210 0 13 chr12 62645756 62645915 -58611615 + (TA)n Simple_repeat Simple_repeat 1 157 0 2 1062 209 262 0 0 chr12 62645926 62645968 -58611562 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1062 361 243 165 18 chr12 62645968 62646077 -58611453 - B1_Mur4 SINE Alu -20 130 6 2 1062 989 103 7 52 chr12 62646226 62646380 -58611150 + B1_Mm SINE Alu 1 147 0 2 1062 354 341 6 6 chr12 62646580 62646748 -58610782 - L1MB7 LINE L1 -21 6163 5996 2 1062 23 78 0 0 chr12 62646813 62646864 -58610666 + AT_rich Low_complexity Low_complexity 1 51 0 2 1062 524 320 34 0 chr12 62646870 62647045 -58610485 + B3A SINE B2 1 181 -17 2 1062 279 0 0 0 chr12 62647058 62647089 -58610441 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1062 1193 226 27 104 chr12 62647390 62647726 -58609804 - ORR1A4 LTR MaLR -17 312 3 2 1062 7604 181 44 136 chr12 62647728 62649863 -58607667 - ORR1A4-int LTR MaLR -24 1939 1 2 1062 1597 121 56 100 chr12 62649865 62650206 -58607324 - ORR1A4 LTR MaLR -2 327 2 2 1062 1097 92 0 0 chr12 62650242 62650383 -58607147 + B1_Mus2 SINE Alu 1 141 -6 2 1062 218 274 11 56 chr12 62650842 62650931 -58606599 - L2a LINE L2 0 3426 3342 2 1062 237 176 27 13 chr12 62651266 62651341 -58606189 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1062 603 225 23 0 chr12 62651374 62651547 -58605983 + GA-rich Low_complexity Low_complexity 2 178 0 2 1062 771 41 31 47 chr12 62652221 62652348 -58605182 - L1Md_F3 LINE L1 -1 6583 6459 2 1063 468 0 0 0 chr12 62653043 62653095 -58604435 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1063 663 300 81 83 chr12 62653838 62653993 -58603537 - Lx7 LINE L1 -2 7471 7321 2 1063 527 43 0 14 chr12 62653993 62654064 -58603466 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1063 210 71 0 0 chr12 62654064 62654092 -58603438 + (CCTG)n Simple_repeat Simple_repeat 1 28 0 2 1063 711 300 81 83 chr12 62654092 62654459 -58603071 - Lx7 LINE L1 -153 7320 6938 2 1063 4921 48 41 0 chr12 62654459 62655098 -58602432 + L1Md_F3 LINE L1 5920 6584 0 2 1063 711 311 42 65 chr12 62655098 62655186 -58602344 - Lx7 LINE L1 -759 6937 6849 2 1063 261 0 0 0 chr12 62655425 62655454 -58602076 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1063 5495 60 22 3 chr12 62655523 62656241 -58601289 - L1Md_F2 LINE L1 -2 6580 5849 2 1063 1070 30 0 0 chr12 62656241 62656376 -58601154 + B1_Mus1 SINE Alu 14 148 0 2 1063 183 100 0 0 chr12 62656376 62656406 -58601124 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1063 22 35 0 0 chr12 62656714 62656743 -58600787 + AT_rich Low_complexity Low_complexity 1 29 0 2 1063 181 0 69 0 chr12 62657137 62657166 -58600364 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1063 2241 109 44 0 chr12 62657280 62657620 -58599910 - Lx3_Mus LINE L1 -8 7001 6647 2 1063 2025 83 0 0 chr12 62657620 62657884 -58599646 + Lx3_Mus LINE L1 6397 6660 -349 2 1063 528 307 63 40 chr12 62657895 62658244 -58599286 - ORR1E LTR MaLR -2 357 1 2 1063 4310 118 15 11 chr12 62658489 62659158 -58598372 - L1_Mus4 LINE L1 0 6636 5965 2 1063 1784 239 53 26 chr12 62659165 62659617 -58597913 - Lx7 LINE L1 -556 7140 6677 2 1063 752 285 19 19 chr12 62659705 62659916 -58597614 + B3 SINE B2 3 213 -3 2 1063 257 333 42 0 chr12 62660954 62661026 -58596504 - MER70A LTR ERVL -5 467 393 2 1063 1994 311 70 13 chr12 62661032 62661790 -58595740 + Lx8 LINE L1 6292 7092 -381 2 1063 3470 82 0 2 chr12 62662041 62662675 -58594855 - L1_Mus1 LINE L1 -531 6036 5404 2 1063 3257 94 71 0 chr12 62662675 62663151 -58594379 + L1_Mus1 LINE L1 6057 6566 -1 2 1063 25 65 0 0 chr12 62664629 62664675 -58592855 + AT_rich Low_complexity Low_complexity 1 46 0 2 1063 1160 124 0 29 chr12 62664825 62665032 -58592498 - L1_Mus4 LINE L1 -12 6624 6424 2 1063 3099 125 61 11 chr12 62665442 62665966 -58591564 - Lx2 LINE L1 -1 6996 6447 2 1063 26 0 0 0 chr12 62668856 62668882 -58588648 + AT_rich Low_complexity Low_complexity 1 26 0 2 1063 1299 79 0 0 chr12 62669105 62669282 -58588248 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 2 1063 4661 256 79 19 chr12 62669461 62671315 -58586215 - Lx6 LINE L1 -572 7124 5122 2 1063 9315 101 22 22 chr12 62671323 62673308 -58584222 - Lx3_Mus LINE L1 0 7009 5031 2 1063 4704 84 37 1 chr12 62673307 62674009 -58583521 + L1_Mur1 LINE L1 2893 3619 -2267 2 1063 10886 197 34 31 chr12 62674005 62674349 -58583181 - Lx6 LINE L1 -739 5141 4800 2 1063 264 30 0 0 chr12 62674349 62674382 -58583148 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1063 10886 197 34 31 chr12 62674382 62676689 -58580841 - Lx6 LINE L1 -1081 4799 2481 2 1063 1128 248 19 10 chr12 62676667 62676980 -58580550 - Lx6 LINE L1 -6550 1178 863 2 1063 499 361 7 7 chr12 62676989 62677276 -58580254 - Lx6 LINE L1 -7420 308 22 2 1063 293 299 8 17 chr12 62677290 62677409 -58580121 - L1_Mur3 LINE L1 -7497 215 98 2 1063 213 274 0 16 chr12 62677493 62677556 -58579974 + CT-rich Low_complexity Low_complexity 2 63 0 2 1063 364 88 43 21 chr12 62678181 62678274 -58579256 + T-rich Low_complexity Low_complexity 3 97 0 2 1063 559 289 12 50 chr12 62679283 62679443 -58578087 - RSINE1 SINE B4 0 165 12 2 1063 447 19 0 0 chr12 62679742 62679794 -58577736 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1063 901 90 0 0 chr12 62679895 62680028 -58577502 - L1_Mus2 LINE L1 0 6566 6434 2 1063 426 20 0 0 chr12 62680608 62680659 -58576871 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 1063 399 298 202 8 chr12 62682576 62682813 -58574717 + B4A SINE B4 5 287 -5 2 1063 652 332 17 12 chr12 62683755 62684013 -58573517 + RMER1B Other Other 2 246 -820 2 1063 1709 180 72 30 chr12 62684009 62684366 -58573164 + RMER1B Other Other 559 910 -156 2 1063 579 191 13 60 chr12 62684517 62684667 -58572863 + RMER1B Other Other 924 1066 0 2 1063 540 167 15 22 chr12 62685214 62685312 -58572218 + polypurine Low_complexity Low_complexity 4 100 0 2 1063 1328 51 0 11 chr12 62685312 62685490 -58572040 + (GGAGA)n Simple_repeat Simple_repeat 5 180 0 2 1063 540 167 15 22 chr12 62685490 62685526 -58572004 + polypurine Low_complexity Low_complexity 101 137 0 2 1063 275 237 0 33 chr12 62686245 62686306 -58571224 + polypyrimidine Low_complexity Low_complexity 1 59 0 2 1063 441 90 0 0 chr12 62686310 62686377 -58571153 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1063 502 324 7 35 chr12 62686382 62686523 -58571007 - B3A SINE B2 -22 176 40 2 1063 29 0 0 0 chr12 62686848 62686877 -58570653 + AT_rich Low_complexity Low_complexity 1 29 0 2 1063 570 68 19 28 chr12 62687236 62687342 -58570188 + (CAAAA)n Simple_repeat Simple_repeat 2 106 0 2 1063 549 0 0 0 chr12 62687485 62687546 -58569984 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1063 261 0 0 0 chr12 62688190 62688219 -58569311 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1063 360 284 88 0 chr12 62689052 62689154 -58568376 + MIRb SINE MIR 89 199 -69 2 1063 322 283 151 33 chr12 62689539 62689784 -58567746 + L1MA6 LINE L1 5971 6244 -56 2 1063 22 70 0 0 chr12 62689795 62689838 -58567692 + AT_rich Low_complexity Low_complexity 1 43 0 2 1063 1027 62 0 52 chr12 62690705 62690859 -58566671 - B1_Mus1 SINE Alu -2 146 1 2 1063 491 218 87 24 chr12 62691242 62691449 -58566081 - Lx9 LINE L1 -8 7636 7417 2 1063 1188 232 39 10 chr12 62691466 62691771 -58565759 - Lx9 LINE L1 -133 7511 7198 2 1063 22 0 0 0 chr12 62692217 62692239 -58565291 + AT_rich Low_complexity Low_complexity 1 22 0 2 1063 2308 164 129 7 chr12 62692330 62692756 -58564774 + Lx LINE L1 6141 6620 -34 3 1063 2158 82 63 0 chr12 62692756 62693059 -58564471 + L1_Mus1 LINE L1 6246 6567 0 3 1063 2308 164 129 7 chr12 62693059 62693075 -58564455 + Lx LINE L1 6621 6637 -17 3 1063 334 300 81 9 chr12 62693139 62693250 -58564280 - B1F SINE Alu -9 140 22 3 1063 326 314 31 24 chr12 62693250 62693266 -58564264 - ID_B1 SINE B4 -9 215 88 3 1063 441 0 0 0 chr12 62693891 62693940 -58563590 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1063 712 234 19 25 chr12 62693988 62694211 -58563319 + Lx2 LINE L1 6530 6885 -112 3 1063 234 150 0 0 chr12 62694197 62694237 -58563293 - L1_Mus3 LINE L1 -284 6354 6315 3 1063 483 312 62 25 chr12 62694243 62694483 -58563047 - RMER15-int LTR ERVL -3208 1791 1543 3 1063 806 62 9 0 chr12 62694706 62694819 -58562711 + (TCC)n Simple_repeat Simple_repeat 2 115 0 3 1063 790 310 32 14 chr12 62694997 62695278 -58562252 - RMER15-int LTR ERVL -3920 1079 794 3 1063 40 0 0 0 chr12 62695324 62695364 -58562166 + AT_rich Low_complexity Low_complexity 1 40 0 3 1063 369 278 47 8 chr12 62695478 62695605 -58561925 - Lx9 LINE L1 -594 7050 6919 3 1063 313 369 44 58 chr12 62695607 62695972 -58561558 - RMER15-int LTR ERVL -4264 735 376 3 1063 554 71 12 0 chr12 62697506 62697590 -58559940 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 1063 386 350 114 0 chr12 62697592 62697746 -58559784 - B3A SINE B2 -27 171 1 3 1063 740 201 20 14 chr12 62698455 62698601 -58558929 - B1_Mur3 SINE Alu -2 147 1 3 1063 200 344 68 37 chr12 62699180 62699343 -58558187 + MIR SINE MIR 95 262 0 3 1063 943 65 62 42 chr12 62699392 62699536 -58557994 + B1_Mus1 SINE Alu 2 148 0 3 1063 341 127 13 0 chr12 62699536 62699615 -58557915 + (CAAAAA)n Simple_repeat Simple_repeat 2 81 0 3 1063 1511 270 14 26 chr12 62699937 62700351 -58557179 - MTD LTR MaLR -14 405 6 3 1063 465 112 49 12 chr12 62700747 62700828 -58556702 + MTD LTR MaLR 1 84 -335 3 1063 552 152 0 0 chr12 62701094 62701193 -58556337 + (TA)n Simple_repeat Simple_repeat 1 99 0 3 1063 245 308 82 27 chr12 62701436 62701546 -58555984 - ORR1E LTR MaLR -167 192 77 3 1063 297 0 0 0 chr12 62702014 62702047 -58555483 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 3 1063 441 313 337 34 chr12 62702099 62702483 -58555047 - RMER15 LTR ERVL -12 563 64 3 1063 1687 255 38 4 chr12 62702627 62703081 -58554449 - Lx2B LINE L1 -7 7001 6500 3 1063 271 328 23 46 chr12 62703384 62703515 -58554015 - Lx7 LINE L1 -1450 6246 6119 3 1063 1284 339 39 16 chr12 62703529 62704152 -58553378 + Lx8 LINE L1 6263 6899 -574 3 1063 432 0 0 0 chr12 62704184 62704232 -58553298 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1063 239 0 0 31 chr12 62704232 62704263 -58553267 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1063 302 0 0 26 chr12 62704265 62704304 -58553226 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1063 801 240 127 164 chr12 62704304 62704738 -58552792 - MT2A LTR ERVL -114 419 2 3 1063 286 309 21 0 chr12 62704743 62704837 -58552693 + Lx8 LINE L1 6959 7054 -419 3 1063 237 65 0 0 chr12 62704837 62704868 -58552662 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1063 28 0 0 0 chr12 62705100 62705128 -58552402 + AT_rich Low_complexity Low_complexity 1 28 0 3 1063 279 0 0 0 chr12 62705209 62705240 -58552290 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1063 320 0 0 24 chr12 62705240 62705280 -58552250 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1063 2395 122 3 0 chr12 62705460 62705829 -58551701 + Lx LINE L1 6283 6652 -2 3 1063 573 315 33 7 chr12 62705829 62705979 -58551551 - MTD LTR MaLR -248 171 18 3 1063 1049 37 8 0 chr12 62705979 62706113 -58551417 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 3 1063 625 252 68 19 chr12 62707659 62707821 -58549709 - MTD LTR MaLR -249 170 1 3 1063 1579 56 84 5 chr12 62707927 62708141 -58549389 + L1_Mus1 LINE L1 6337 6567 0 3 1063 636 111 0 0 chr12 62708144 62708243 -58549287 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 3 1063 860 287 141 25 chr12 62708775 62709129 -58548401 - MTC LTR MaLR -2 419 25 3 1063 398 321 90 32 chr12 62709158 62709435 -58548095 - L1ME2 LINE L1 -317 5847 5555 3 1063 2505 188 38 45 chr12 62709970 62710554 -58546976 - RMER6C LTR ERVK 0 690 111 3 1063 2773 191 14 11 chr12 62710588 62711189 -58546341 - RMER6-int LTR ERVK -4 3173 2634 3 1063 1280 251 50 41 chr12 62711189 62711630 -58545900 - RLTR20C LTR ERVK 0 534 90 3 1063 385 87 29 66 chr12 62711638 62711774 -58545756 + A-rich Low_complexity Low_complexity 2 132 0 3 1063 2725 205 38 23 chr12 62711849 62712856 -58544674 - RMER6-int LTR ERVK -386 4874 3791 3 1063 576 198 32 32 chr12 62713222 62713347 -58544183 - RMER20B LTR ERVK -502 125 1 3 1063 499 229 29 0 chr12 62713350 62713490 -58544040 - RMER6-int LTR ERVK -2083 3697 3554 3 1063 498 33 0 0 chr12 62713490 62713550 -58543980 + (CTATT)n Simple_repeat Simple_repeat 4 63 0 3 1063 2981 208 73 5 chr12 62713554 62714405 -58543125 - Lx5 LINE L1 -742 6308 5387 3 1063 2173 268 8 12 chr12 62714404 62714911 -58542619 + Lx5 LINE L1 6543 7047 -3 3 1063 1416 231 6 21 chr12 62714971 62715299 -58542231 - RMER6-int LTR ERVK -1956 3304 2982 3 1063 1587 174 3 21 chr12 62715299 62715581 -58541949 - RMER6-int LTR ERVK -2900 277 1 3 1063 914 137 157 34 chr12 62715581 62715785 -58541745 - RMER6C LTR ERVK 0 690 462 3 1063 6527 133 23 11 chr12 62715798 62716904 -58540626 - Lx LINE L1 -21 6633 5515 3 1063 1827 144 0 0 chr12 62716901 62717192 -58540338 - Lx LINE L1 -856 5027 4737 3 1063 872 182 219 4 chr12 62717217 62717336 -58540194 - RMER6C LTR ERVK -209 481 321 3 1063 359 79 0 31 chr12 62717336 62717401 -58540129 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 3 1063 872 182 219 4 chr12 62717401 62717546 -58539984 - RMER6C LTR ERVK -370 320 161 3 1063 248 70 0 23 chr12 62717549 62717593 -58539937 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1063 232 102 0 39 chr12 62717598 62717649 -58539881 + (GAAA)n Simple_repeat Simple_repeat 3 51 0 3 1063 227 328 29 15 chr12 62717660 62717796 -58539734 + Lx8 LINE L1 4388 4525 -1355 3 1063 538 307 65 126 chr12 62717813 62718242 -58539288 - RMER10A LTR ERVL -28 414 12 3 1063 2177 324 70 52 chr12 62718264 62720792 -58536738 + Lx8 LINE L1 4516 7133 -340 3 1063 441 54 0 0 chr12 62720792 62720848 -58536682 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1063 2177 334 90 38 chr12 62720848 62720874 -58536656 + Lx8 LINE L1 7134 7162 -311 3 1063 49 18 0 0 chr12 62721533 62721589 -58535941 + AT_rich Low_complexity Low_complexity 1 56 0 3 1063 970 264 121 46 chr12 62722103 62722799 -58534731 + L1_Mur3 LINE L1 1907 2654 -3226 3 1063 451 325 78 25 chr12 62722863 62723182 -58534348 - L1MA9 LINE L1 -255 6057 5722 3 1063 406 256 25 0 chr12 62723222 62723375 -58534155 - L1MA9 LINE L1 -644 5656 5495 3 1063 431 281 68 18 chr12 62724208 62724371 -58533159 + MER5B DNA MER1_type 5 175 -3 3 1063 290 343 30 20 chr12 62724810 62724911 -58532619 + PB1D7 SINE Alu 19 120 0 3 1063 501 141 0 0 chr12 62724938 62725023 -58532507 + (GGGA)n Simple_repeat Simple_repeat 4 88 0 3 1063 324 0 0 0 chr12 62725985 62726021 -58531509 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1063 1224 20 7 0 chr12 62726021 62726167 -58531363 - B1_Mus2 SINE Alu 0 147 1 3 1063 390 314 24 0 chr12 62726994 62727118 -58530412 - B3 SINE B2 -89 127 1 3 1063 572 148 9 18 chr12 62728238 62728348 -58529182 - L1_Mur1 LINE L1 -6668 314 206 3 1063 6789 82 2 11 chr12 62728433 62730033 -58527497 - L1Md_Gf LINE L1 -4025 1861 181 3 1063 953 69 8 0 chr12 62730033 62730164 -58527366 + B1_Mm SINE Alu 9 140 -7 3 1063 1095 252 59 56 chr12 62730818 62731141 -58526389 - RLTR18B LTR ERVK 0 512 189 3 1063 893 230 50 22 chr12 62731148 62731370 -58526160 - RLTR18B LTR ERVK -277 235 8 3 1063 23 0 0 0 chr12 62731436 62731459 -58526071 + AT_rich Low_complexity Low_complexity 1 23 0 3 1063 583 273 14 0 chr12 62731543 62731686 -58525844 + B1_Mus2 SINE Alu 3 147 0 3 1063 21 0 0 0 chr12 62731847 62731868 -58525662 + AT_rich Low_complexity Low_complexity 1 21 0 3 1063 21 0 0 0 chr12 62731979 62732000 -58525530 + AT_rich Low_complexity Low_complexity 1 21 0 3 1063 23 0 0 0 chr12 62732556 62732579 -58524951 + AT_rich Low_complexity Low_complexity 1 23 0 3 1063 315 0 0 0 chr12 62732686 62732721 -58524809 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1063 198 0 0 0 chr12 62732722 62732744 -58524786 + (CTTTG)n Simple_repeat Simple_repeat 4 25 0 3 1063 530 290 9 40 chr12 62733714 62733937 -58523593 + Lx7 LINE L1 7473 7688 -8 3 1063 35350 35 0 0 chr12 62733999 62739634 -58517896 + L1Md_T LINE L1 1 5589 -297 3 1063 9005 4 0 0 chr12 62739634 62740630 -58516900 + L1Md_T LINE L1 5590 6585 0 3 1063 685 229 21 0 chr12 62740656 62740796 -58516734 + B1_Mus2 SINE Alu 5 147 0 3 1063 222 37 0 0 chr12 62740800 62740827 -58516703 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1063 2314 200 100 17 chr12 62740861 62741391 -58516139 + Lx3C LINE L1 6401 6974 -2 3 1063 423 0 0 0 chr12 62742016 62742063 -58515467 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1063 28 0 0 0 chr12 62742238 62742266 -58515264 + AT_rich Low_complexity Low_complexity 1 28 0 3 1063 432 338 20 13 chr12 62742734 62742884 -58514646 - B3A SINE B2 -46 152 2 3 1063 6936 115 20 18 chr12 62743411 62744797 -58512733 + Lx LINE L1 5244 6637 -17 3 1063 302 304 91 16 chr12 62744913 62745100 -58512430 - L1MC2 LINE L1 -208 6136 5936 3 1063 247 345 20 5 chr12 62745186 62745381 -58512149 - L1MC2 LINE L1 -2077 5708 5511 3 1063 246 352 96 25 chr12 62745571 62745851 -58511679 - Lx7 LINE L1 -28 7445 7146 3 1063 437 274 108 39 chr12 62745870 62746102 -58511428 - Lx7 LINE L1 -1524 5949 5702 3 1063 281 266 33 58 chr12 62746107 62746126 -58511404 + MTEa LTR MaLR 240 254 -105 3 1063 3190 61 7 2 chr12 62746126 62746535 -58510995 - L1_Mus1 LINE L1 0 6567 6157 3 1063 304 266 33 58 chr12 62746535 62746635 -58510895 + MTEa LTR MaLR 255 373 -6 3 1063 221 253 11 32 chr12 62747115 62747209 -58510321 + A-rich Low_complexity Low_complexity 4 95 0 3 1063 25 0 0 0 chr12 62747620 62747645 -58509885 + AT_rich Low_complexity Low_complexity 1 25 0 3 1063 1396 203 147 40 chr12 62747962 62748336 -58509194 - MTD LTR MaLR -1 418 5 3 1063 24 77 0 0 chr12 62749008 62749060 -58508470 + AT_rich Low_complexity Low_complexity 1 52 0 3 1063 887 108 29 40 chr12 62749070 62749243 -58508287 - Lx3_Mus LINE L1 -15 6994 6824 3 1063 4112 101 0 2 chr12 62749244 62749812 -58507718 + Lx3_Mus LINE L1 6274 6840 -169 3 1063 21 36 0 0 chr12 62750983 62751011 -58506519 + AT_rich Low_complexity Low_complexity 1 28 0 3 1063 21 0 0 0 chr12 62751691 62751712 -58505818 + AT_rich Low_complexity Low_complexity 1 21 0 3 1063 244 404 18 0 chr12 62752260 62752369 -58505161 + MLT1F2 LTR MaLR 1 111 -449 3 1063 1014 88 0 39 chr12 62753129 62753282 -58504248 + B1_Mm SINE Alu 1 147 0 3 1063 2805 125 2 11 chr12 62753340 62753786 -58503744 + Lx LINE L1 6205 6646 -8 3 1063 974 157 6 0 chr12 62753970 62754148 -58503382 + CT-rich Low_complexity Low_complexity 2 180 0 4 1063 428 264 86 0 chr12 62754174 62754314 -58503216 + B3 SINE B2 65 216 0 4 1063 338 376 37 6 chr12 62754612 62754775 -58502755 + B4A SINE B4 6 173 -119 4 1063 30 59 0 0 chr12 62755830 62755881 -58501649 + AT_rich Low_complexity Low_complexity 1 51 0 4 1063 223 400 12 0 chr12 62756797 62756882 -58500648 - PB1D10 SINE Alu -29 88 3 4 1063 200 250 13 38 chr12 62757002 62757081 -58500449 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1063 1437 72 0 0 chr12 62757368 62757706 -58499824 + (TCTA)n Simple_repeat Simple_repeat 1 338 0 4 1063 1328 62 6 0 chr12 62757726 62757905 -58499625 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 1063 23 0 0 0 chr12 62758042 62758065 -58499465 + AT_rich Low_complexity Low_complexity 1 23 0 4 1063 34119 77 6 8 chr12 62758168 62762800 -58494730 - L1Md_F2 LINE L1 -1 6581 1975 4 1063 326 42 0 20 chr12 62762800 62762849 -58494681 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 1063 34119 84 25 16 chr12 62762849 62764171 -58493359 - L1Md_F2 LINE L1 -3909 1974 627 4 1063 554 290 109 65 chr12 62765054 62765297 -58492233 + RLTR40 LTR ERVK 30 282 -535 4 1063 283 89 18 18 chr12 62765297 62765354 -58492176 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1063 554 290 109 65 chr12 62765354 62765449 -58492081 + RLTR40 LTR ERVK 283 383 -434 4 1063 237 33 0 0 chr12 62765547 62765577 -58491953 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1063 251 243 112 42 chr12 62765577 62765754 -58491776 + RLTR40 LTR ERVK 532 798 -19 4 1063 224 351 51 59 chr12 62766398 62766516 -58491014 - B1_Mur4 SINE Alu -6 144 28 4 1063 1703 250 168 8 chr12 62767117 62767223 -58490307 - RMER1B Other Other -4 1062 922 4 1063 360 0 0 0 chr12 62767223 62767263 -58490267 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1063 1703 264 104 16 chr12 62767263 62767929 -58489601 - RMER1B Other Other -145 921 84 4 1063 33 25 0 0 chr12 62767968 62768008 -58489522 + AT_rich Low_complexity Low_complexity 1 40 0 4 1063 1110 67 13 0 chr12 62768171 62768320 -58489210 - L1_Mus4 LINE L1 -249 6387 6237 4 1063 346 132 0 81 chr12 62768321 62768420 -58489110 + L1_Mus4 LINE L1 6546 6636 0 4 1063 455 330 60 22 chr12 62768852 62769035 -58488495 + B3 SINE B2 21 210 -6 4 1063 291 28 0 0 chr12 62769176 62769212 -58488318 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1063 423 0 0 0 chr12 62769319 62769366 -58488164 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1063 21 36 0 0 chr12 62769969 62769997 -58487533 + AT_rich Low_complexity Low_complexity 1 28 0 4 1063 25 0 0 0 chr12 62771363 62771388 -58486142 + AT_rich Low_complexity Low_complexity 1 25 0 4 1063 282 106 0 0 chr12 62771447 62771494 -58486036 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1063 183 129 0 0 chr12 62771763 62771794 -58485736 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1063 27 0 0 0 chr12 62772021 62772048 -58485482 + AT_rich Low_complexity Low_complexity 1 27 0 4 1063 21 71 0 0 chr12 62772537 62772579 -58484951 + AT_rich Low_complexity Low_complexity 1 42 0 4 1063 1546 25 66 0 chr12 62775149 62775345 -58482185 - L1Md_F3 LINE L1 -15 6569 6361 4 1063 23 33 0 0 chr12 62776030 62776060 -58481470 + AT_rich Low_complexity Low_complexity 1 30 0 4 1063 343 209 84 56 chr12 62776159 62776338 -58481192 + L1MA8 LINE L1 5780 5963 -337 4 1063 243 0 0 0 chr12 62777305 62777332 -58480198 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1063 234 0 0 0 chr12 62777365 62777391 -58480139 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1063 24 32 0 0 chr12 62779303 62779334 -58478196 + AT_rich Low_complexity Low_complexity 1 31 0 4 1063 261 346 0 13 chr12 62779338 62779417 -58478113 - B1F1 SINE Alu -23 126 49 4 1063 2923 223 91 15 chr12 62780001 62780653 -58476877 - Lx5 LINE L1 -7 7043 6343 4 1063 2417 176 7 2 chr12 62780649 62781105 -58476425 + L1_Mur2 LINE L1 4728 5185 -692 4 1063 351 298 38 82 chr12 62781107 62781290 -58476240 - BGLII_B LTR ERVK 0 553 379 4 1063 4667 138 12 13 chr12 62781313 62782076 -58475454 + Lx2 LINE L1 6017 6778 -219 4 1063 4575 96 28 3 chr12 62782083 62782810 -58474720 + L1MC LINE L1 2956 3733 -2413 4 1063 1141 147 56 5 chr12 62782803 62783001 -58474529 + Lx2 LINE L1 6766 6973 -24 4 1063 1291 221 109 30 chr12 62783026 62783461 -58474069 - BGLII_B LTR ERVK -6 435 9 4 132 1551 147 81 7 chr12 62783461 62783756 -58473774 + L1_Mur2 LINE L1 5189 5505 -372 4 1064 23 0 0 0 chr12 62784128 62784151 -58473379 + AT_rich Low_complexity Low_complexity 1 23 0 4 1064 3698 98 2 0 chr12 62784151 62784669 -58472861 - L1_Mm LINE L1 -631 5252 4734 4 1064 1522 123 13 0 chr12 62784669 62784904 -58472626 + L1_Mus3 LINE L1 6395 6632 -6 4 1064 198 191 0 0 chr12 62784913 62784955 -58472575 + A-rich Low_complexity Low_complexity 1 42 0 4 1064 309 308 55 30 chr12 62785217 62785381 -58472149 - L1MEc LINE L1 -2311 4008 3841 4 1064 873 113 105 0 chr12 62785420 62785553 -58471977 + B1_Mus1 SINE Alu 2 148 0 4 1064 330 80 0 0 chr12 62785558 62785608 -58471922 + (A)n Simple_repeat Simple_repeat 1 50 0 4 1064 26 64 0 0 chr12 62786221 62786268 -58471262 + AT_rich Low_complexity Low_complexity 1 47 0 4 1064 686 12 12 0 chr12 62786352 62786435 -58471095 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 4 1064 32 0 0 0 chr12 62786516 62786548 -58470982 + AT_rich Low_complexity Low_complexity 1 32 0 4 1064 514 149 15 22 chr12 62786624 62786761 -58470769 + (TG)n Simple_repeat Simple_repeat 1 136 0 4 1064 456 261 94 112 chr12 62786761 62786985 -58470545 - B4 SINE B4 0 292 73 4 1064 423 0 0 0 chr12 62787133 62787180 -58470350 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1064 419 333 78 31 chr12 62787250 62787637 -58469893 - L1MEc LINE L1 -4972 1428 1024 4 1064 241 93 0 36 chr12 62787724 62787780 -58469750 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1064 3015 51 15 10 chr12 62788441 62788835 -58468695 - MTA_Mm LTR MaLR 0 396 1 4 1064 1166 218 39 29 chr12 62788845 62789273 -58468257 - RMER6D LTR ERVK -4 716 113 4 1064 380 345 78 90 chr12 62789290 62789410 -58468120 + MLT1B LTR MaLR 53 181 -209 4 1064 1119 101 0 0 chr12 62789410 62789618 -58467912 + (TC)n Simple_repeat Simple_repeat 1 208 0 4 1064 380 345 78 90 chr12 62789618 62789830 -58467700 + MLT1B LTR MaLR 182 381 -9 4 1064 650 304 73 52 chr12 62790013 62790430 -58467100 + MER34A1 LTR ERV1 5 467 -120 4 1064 441 84 0 0 chr12 62790445 62790516 -58467014 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 4 1064 295 291 84 5 chr12 62791032 62791222 -58466308 - Lx9 LINE L1 -48 7596 7392 4 1064 6572 94 5 0 chr12 62791319 62792242 -58465288 - L1_Mus4 LINE L1 0 6636 5709 4 1064 301 295 80 75 chr12 62792250 62792437 -58465093 - Lx9 LINE L1 -497 7147 6960 4 1064 869 217 60 103 chr12 62792431 62792829 -58464701 - Lx9 LINE L1 -1717 5927 5507 4 1064 1316 144 8 25 chr12 62794415 62794650 -58462880 - L1Md_F2 LINE L1 0 6582 6352 4 1064 1167 312 31 13 chr12 62794735 62795231 -58462299 - Lx9 LINE L1 -1679 5965 5429 4 1064 1001 247 81 73 chr12 62795261 62795742 -58461788 + L1_Mur3 LINE L1 3473 3957 -1923 4 1064 1066 284 60 25 chr12 62795767 62796085 -58461445 + Lx9 LINE L1 6411 6739 -905 4 1064 558 313 3 22 chr12 62796114 62796337 -58461193 - Lx7 LINE L1 -1126 6347 6127 4 1064 358 346 72 36 chr12 62797117 62797339 -58460191 + B4A SINE B4 3 232 -60 4 1064 4926 114 87 6 chr12 62797804 62798608 -58458922 - Lx3_Mus LINE L1 -8 7001 6133 4 1064 225 65 0 0 chr12 62798751 62798782 -58458748 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1064 1136 137 10 16 chr12 62799259 62799452 -58458078 + B2_Mm2 SINE B2 4 195 0 4 1064 37957 30 0 1 chr12 62799938 62806595 -58450935 - L1Md_T LINE L1 0 6585 1 4 1064 207 188 0 0 chr12 62807295 62807343 -58450187 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 4 1064 282 225 32 162 chr12 62807343 62807497 -58450033 + ORR1C2 LTR MaLR 20 153 -231 4 1064 901 169 46 11 chr12 62807512 62807686 -58449844 + URR1A DNA MER1_type 47 226 0 4 1064 434 239 67 63 chr12 62807686 62807727 -58449803 - CYRA11_Mm Unknown Y-chromosome -260 325 134 4 1064 665 282 81 15 chr12 62807764 62807962 -58449568 + ORR1C2 LTR MaLR 174 384 0 4 1064 211 387 42 21 chr12 62808133 62808228 -58449302 - B4 SINE B4 -162 130 34 4 1064 5443 76 6 0 chr12 62808640 62809363 -58448167 + L1Md_F2 LINE L1 4859 5585 -298 4 1064 7495 74 2 2 chr12 62809364 62810353 -58447177 + L1Md_F2 LINE L1 5587 6575 -7 4 1064 1151 171 0 0 chr12 62810376 62810581 -58446949 - L1_Mm LINE L1 -819 5064 4860 4 1064 1693 85 0 0 chr12 62810580 62810803 -58446727 + L1_Mus3 LINE L1 6057 6279 -359 4 1064 4698 62 15 3 chr12 62810844 62811457 -58446073 + L1Md_F2 LINE L1 5963 6582 0 4 1064 2180 113 11 50 chr12 62811458 62811840 -58445690 + L1_Mus3 LINE L1 6272 6638 0 4 1064 1478 199 3 10 chr12 62811858 62812162 -58445368 - L1_Mm LINE L1 -1008 4875 4574 4 1064 1597 150 42 48 chr12 62812159 62812468 -58445062 + Lx LINE L1 6323 6629 -25 4 1064 489 282 134 91 chr12 62813308 62813659 -58443871 + MTD LTR MaLR 18 406 -13 4 1064 895 208 12 94 chr12 62813755 62813999 -58443531 + URR1B DNA MER1_type 1 224 -1 4 1064 391 215 0 11 chr12 62814010 62814189 -58443341 + (TA)n Simple_repeat Simple_repeat 1 177 0 4 1064 625 303 22 11 chr12 62814286 62814466 -58443064 - B3 SINE B2 -34 182 1 4 1064 590 294 26 51 chr12 62814497 62814848 -58442682 - L1_Rod LINE L1 -621 5226 4885 4 1064 500 130 54 36 chr12 62814855 62814967 -58442563 - Lx LINE L1 -2 6652 6539 4 1064 381 311 98 0 chr12 62814987 62815083 -58442447 - L1_Rod LINE L1 -1102 4745 4638 4 1064 732 54 0 0 chr12 62815083 62815176 -58442354 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 1064 381 311 98 0 chr12 62815176 62815262 -58442268 - L1_Rod LINE L1 -1210 4637 4546 4 1064 14957 149 21 55 chr12 62815249 62818338 -58439192 - L1_Mur1 LINE L1 -195 5691 2707 4 1064 12483 150 112 13 chr12 62818324 62820805 -58436725 - L1VL4 LINE L1 -1146 4737 2011 4 1064 10951 24 0 1 chr12 62820802 62822085 -58435445 + L1Md_A LINE L1 4305 5586 -297 4 1064 8509 30 0 0 chr12 62822085 62823081 -58434449 + L1Md_A LINE L1 5587 6582 0 4 1064 4739 158 25 34 chr12 62823081 62824612 -58432918 - L1VL4 LINE L1 -1886 2028 609 4 1064 23 54 0 0 chr12 62825144 62825181 -58432349 + AT_rich Low_complexity Low_complexity 1 37 0 4 1064 773 299 45 25 chr12 62825224 62825729 -58431801 - L1_Rod LINE L1 -4434 1413 900 4 1064 212 250 0 0 chr12 62826327 62826379 -58431151 + (TATG)n Simple_repeat Simple_repeat 2 53 0 4 1064 1228 292 73 3 chr12 62827751 62828119 -58429411 - Lx2B LINE L1 -20 6980 6587 4 1064 1986 218 2 10 chr12 62828118 62828531 -58428999 + Lx2B LINE L1 6227 6636 -364 4 1064 351 355 64 8 chr12 62829461 62829586 -58427944 - ID_B1 SINE B4 -63 161 30 4 1064 305 97 32 0 chr12 62829652 62829714 -58427816 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 1064 283 329 0 12 chr12 62829971 62830051 -58427479 + B3 SINE B2 3 81 -135 5 1064 1521 288 61 14 chr12 62830433 62830876 -58426654 + MT2A LTR ERVL 1 464 -69 5 1064 677 256 83 40 chr12 62830880 62831157 -58426373 + MERVL_2A-int LTR ERVL 447 735 -5026 5 1064 834 278 106 14 chr12 62831169 62831594 -58425936 + MERVL_2A-int LTR ERVL 4119 4500 -985 5 1064 1675 218 48 33 chr12 62831594 62832126 -58425404 - RMER19B LTR ERVK -238 664 109 5 1064 751 308 5 0 chr12 62832145 62832343 -58425187 + MERVL_2A-int LTR ERVL 4597 4795 -966 5 1064 1392 309 50 4 chr12 62832408 62832883 -58424647 + MERVL_2A-int LTR ERVL 4781 5277 -484 5 1064 1125 294 42 24 chr12 62832889 62833224 -58424306 + ORR1D2 LTR MaLR 30 370 0 5 1064 495 0 0 0 chr12 62833811 62833866 -58423664 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1064 345 304 16 137 chr12 62834662 62834845 -58422685 - RSINE1 SINE B4 0 165 5 5 1064 26 50 0 0 chr12 62834968 62835008 -58422522 + AT_rich Low_complexity Low_complexity 1 40 0 5 1064 205 179 26 0 chr12 62835033 62835072 -58422458 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1064 576 143 0 0 chr12 62835072 62835170 -58422360 + (TA)n Simple_repeat Simple_repeat 1 98 0 5 1064 358 111 48 0 chr12 62835170 62835233 -58422297 - HAL1-3A_ME LINE L1 -840 2018 1953 5 1064 1591 197 84 13 chr12 62835383 62835763 -58421767 + MYSERV16_I-int LTR ERVK 1512 1918 -408 5 1064 234 159 0 0 chr12 62836029 62836073 -58421457 - Lx4B LINE L1 0 7058 7015 5 1064 1115 236 101 11 chr12 62836098 62836385 -58421145 - Lx4B LINE L1 -131 6927 6615 5 1064 540 191 8 1 chr12 62836391 62836509 -58421021 - Lx5 LINE L1 -497 6512 6394 5 1064 504 0 0 0 chr12 62837220 62837276 -58420254 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1064 270 0 0 0 chr12 62837276 62837305 -58420225 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1064 1053 116 0 0 chr12 62839970 62840117 -58417413 - B1_Mus1 SINE Alu 0 148 2 5 1064 21 0 0 0 chr12 62841406 62841427 -58416103 + AT_rich Low_complexity Low_complexity 1 21 0 5 1064 5372 224 98 4 chr12 62841427 62841969 -58415561 - Lx4B LINE L1 -17 7041 6386 5 1064 405 0 0 0 chr12 62841969 62842014 -58415516 + (TTG)n Simple_repeat Simple_repeat 2 46 0 5 1064 5508 201 46 16 chr12 62842014 62843656 -58413874 - Lx4B LINE L1 -673 6385 4727 5 1064 387 277 111 80 chr12 62844017 62844335 -58413195 - RLTR17 LTR ERVK -270 422 60 5 1064 8388 236 45 107 chr12 62844346 62848103 -58409427 - Lx4B LINE L1 -1116 4767 1248 5 1064 3910 212 29 32 chr12 62848532 62849439 -58408091 - RMER13B LTR ERVK -4 904 1 5 1064 22 0 0 0 chr12 62849498 62849520 -58408010 + AT_rich Low_complexity Low_complexity 1 22 0 5 1064 723 350 28 46 chr12 62849881 62850273 -58407257 - ERVL-E-int LTR ERVL -749 4918 4534 5 1064 2445 77 39 0 chr12 62850273 62850610 -58406920 - L1_Mus3 LINE L1 -351 6287 5938 5 1064 2378 92 11 9 chr12 62850611 62850960 -58406570 + L1_Mus3 LINE L1 6286 6635 -3 5 1064 1776 24 0 5 chr12 62851719 62851932 -58405598 - L1Md_F2 LINE L1 -14 6568 6357 5 1064 1483 255 79 59 chr12 62851943 62852538 -58404992 - Lx7 LINE L1 -17 7679 7073 5 1064 301 350 62 40 chr12 62853276 62853502 -58404028 - Lx8 LINE L1 -11 7462 7232 5 1064 21 0 0 0 chr12 62853628 62853649 -58403881 + AT_rich Low_complexity Low_complexity 1 21 0 5 1064 249 235 15 0 chr12 62854029 62854097 -58403433 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1064 1557 301 71 66 chr12 62855267 62855890 -58401640 - Lx6 LINE L1 -73 7387 6762 5 1064 2205 141 19 8 chr12 62855918 62856289 -58401241 - L1_Mus3 LINE L1 -8 6630 6256 5 1064 6760 140 12 0 chr12 62856289 62857397 -58400133 - L1_Mm LINE L1 -549 5334 4214 5 1064 315 0 0 0 chr12 62857397 62857432 -58400098 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1064 940 256 51 27 chr12 62857432 62857689 -58399841 - ORR1E LTR MaLR -50 309 47 5 1064 38936 55 1 23 chr12 62857701 62864374 -58393156 - L1Md_T LINE L1 0 6582 104 5 1064 15990 148 20 3 chr12 62864370 62867194 -58390336 - L1_Mm LINE L1 -1651 4232 1360 5 1064 183 186 0 0 chr12 62868152 62868195 -58389335 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 1064 376 254 55 71 chr12 62868285 62868412 -58389118 + B1F SINE Alu 16 140 -9 5 1064 21 89 0 0 chr12 62868600 62868656 -58388874 + AT_rich Low_complexity Low_complexity 1 56 0 5 1064 21 0 0 0 chr12 62868965 62868986 -58388544 + AT_rich Low_complexity Low_complexity 1 21 0 5 1064 243 79 0 0 chr12 62869694 62869732 -58387798 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1064 2961 138 12 4 chr12 62870039 62870533 -58386997 - Lx LINE L1 -2 6652 6155 5 1064 296 325 146 15 chr12 62871397 62871603 -58385927 + L1M3e LINE L1 61 293 -6737 5 1064 57 28 0 0 chr12 62872338 62872409 -58385121 + AT_rich Low_complexity Low_complexity 1 71 0 5 1064 393 231 0 0 chr12 62872566 62872644 -58384886 + 4.5SRNA scRNA scRNA 1 78 -16 5 1064 747 146 7 0 chr12 62872644 62872781 -58384749 + Lx LINE L1 6517 6654 0 5 1064 251 297 48 19 chr12 62873579 62873682 -58383848 + PB1D10 SINE Alu 12 117 0 5 1064 291 263 25 62 chr12 62873704 62873785 -58383745 + ID4 SINE ID 4 81 -2 5 1064 564 15 0 0 chr12 62874208 62874273 -58383257 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1064 260 336 33 25 chr12 62874958 62875080 -58382450 + ORR1E LTR MaLR 1 123 -236 5 1064 309 337 108 29 chr12 62875098 62875404 -58382126 + L1MA6 LINE L1 2273 2602 -3541 5 1064 323 323 118 47 chr12 62875692 62876185 -58381345 + L1MA6 LINE L1 3598 4125 -2018 5 1064 271 60 40 0 chr12 62876202 62876252 -58381278 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 1064 709 329 93 37 chr12 62876347 62876861 -58380669 + L1MA6 LINE L1 4847 5389 -754 5 1064 621 301 87 100 chr12 62876875 62877574 -58379956 + L1MA6 LINE L1 5417 6106 -194 5 1064 281 26 26 0 chr12 62877582 62877620 -58379910 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1064 259 264 27 48 chr12 62878480 62878627 -58378903 + L1M2 LINE L1 5182 5325 -818 5 1064 2090 80 0 0 chr12 62879590 62879876 -58377654 + MusHAL1 LINE L1 883 1168 -1544 5 1064 392 337 91 60 chr12 62880022 62880221 -58377309 + B3A SINE B2 4 208 -8 5 1064 1917 190 84 43 chr12 62880319 62880782 -58376748 - Lx3C LINE L1 -6 6970 6489 5 1064 260 307 144 41 chr12 62880825 62881117 -58376413 + MER63C DNA AcHobo 385 706 -224 5 1064 942 306 59 12 chr12 62881408 62882022 -58375508 - L1_Mur3 LINE L1 -3403 2444 1790 5 1064 333 118 0 0 chr12 62882121 62882172 -58375358 + (CAT)n Simple_repeat Simple_repeat 2 52 0 5 1064 3770 215 33 30 chr12 62882172 62883051 -58374479 - Lx3C LINE L1 -4 6972 6091 5 1064 3418 156 34 0 chr12 62883055 62883640 -58373890 - L1_Mur1 LINE L1 -87 5799 5195 5 1064 1006 205 17 0 chr12 62883652 62883886 -58373644 + L1_Mur1 LINE L1 4439 4676 -1201 5 1064 506 232 84 108 chr12 62883889 62884102 -58373428 - RLTR31_Mm LTR ERVK 0 561 354 5 1064 1324 249 59 44 chr12 62884091 62884562 -58372968 - RLTR31_Mm LTR ERVK -24 537 74 5 1064 391 195 45 82 chr12 62884532 62884666 -58372864 - RLTR31_Mm LTR ERVK -429 155 27 5 1064 3069 142 25 6 chr12 62884666 62885184 -58372346 + L1_Mur1 LINE L1 4687 5214 -672 5 1064 210 179 45 45 chr12 62885408 62885496 -58372034 + (TTTG)n Simple_repeat Simple_repeat 3 90 0 5 1064 4885 62 5 9 chr12 62886049 62886689 -58370841 - L1Md_F2 LINE L1 -12 6570 5934 5 1064 239 173 30 18 chr12 62886711 62886876 -58370654 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 5 1064 272 79 0 0 chr12 62886892 62886930 -58370600 + L1Md_F2 LINE L1 5899 5936 -646 5 1064 505 348 0 0 chr12 62887806 62887941 -58369589 - RSINE1 SINE B4 -10 155 21 5 1064 768 269 37 28 chr12 62888153 62888367 -58369163 - B3 SINE B2 0 216 1 5 1064 266 257 14 0 chr12 62888422 62888492 -58369038 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 5 1064 437 360 29 29 chr12 62888522 62888762 -58368768 - B4A SINE B4 -48 244 5 5 1064 236 314 76 92 chr12 62888796 62889294 -58368236 - L1M2 LINE L1 -894 5249 4760 5 1064 207 98 38 38 chr12 62889440 62889493 -58368037 + (ATATG)n Simple_repeat Simple_repeat 2 54 0 5 1064 441 0 0 0 chr12 62890212 62890261 -58367269 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 5 1064 1811 119 20 23 chr12 62890356 62890568 -58366962 - Lx2 LINE L1 -1 6996 6783 5 1064 3059 40 45 0 chr12 62890568 62890947 -58366583 - MTA_Mm LTR MaLR 0 396 1 5 1064 1811 119 20 23 chr12 62890947 62891034 -58366496 - Lx2 LINE L1 -215 6782 6698 5 1064 33 43 0 0 chr12 62891687 62891734 -58365796 + AT_rich Low_complexity Low_complexity 1 47 0 5 1064 358 114 29 0 chr12 62891906 62891976 -58365554 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1064 23 33 0 0 chr12 62892169 62892199 -58365331 + AT_rich Low_complexity Low_complexity 1 30 0 5 1064 209 132 64 26 chr12 62892561 62892639 -58364891 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 5 1064 1986 197 52 12 chr12 62892657 62893083 -58364447 + RMER4B LTR ERVK 6 448 -137 5 1064 26 0 0 0 chr12 62893250 62893276 -58364254 + AT_rich Low_complexity Low_complexity 1 26 0 5 1064 25 75 0 0 chr12 62893735 62893788 -58363742 + AT_rich Low_complexity Low_complexity 1 53 0 5 1064 614 312 16 31 chr12 62894807 62894999 -58362531 + B3 SINE B2 23 211 -5 5 1064 271 165 18 27 chr12 62895063 62895175 -58362355 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1064 610 333 15 52 chr12 62895268 62895540 -58361990 - MT2A LTR ERVL -140 393 132 5 1064 1883 147 25 94 chr12 62895657 62896079 -58361451 + ORR1A3 LTR MaLR 3 418 -3 5 1064 3742 296 69 11 chr12 62896081 62897774 -58359756 - MERVL_2A-int LTR ERVL -1467 4294 2503 5 1064 3114 322 57 24 chr12 62897773 62899956 -58357574 - MERVL_2A-int LTR ERVL -3354 2360 98 5 1064 387 0 0 0 chr12 62899988 62900031 -58357499 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1064 24 32 0 0 chr12 62900061 62900092 -58357438 + AT_rich Low_complexity Low_complexity 1 31 0 5 1064 456 377 11 11 chr12 62900653 62900830 -58356700 - MTEa LTR MaLR -200 179 3 5 1064 1725 78 0 28 chr12 62900888 62901137 -58356393 + L1_Mus1 LINE L1 6326 6567 0 5 1064 738 104 0 46 chr12 62901480 62901611 -58355919 - L1_Mus1 LINE L1 0 6567 6443 5 1064 3816 100 0 0 chr12 62901611 62902180 -58355350 + L1_Mm LINE L1 1568 2136 -3747 5 1064 378 320 92 72 chr12 62902180 62902473 -58355057 - MT2A LTR ERVL -125 408 110 5 1064 215 93 0 23 chr12 62902997 62903041 -58354489 + (TTTTTA)n Simple_repeat Simple_repeat 3 45 0 5 1064 2796 88 55 0 chr12 62903092 62903491 -58354039 - BGLII LTR ERVK 0 421 1 5 1064 417 20 0 0 chr12 62903550 62903600 -58353930 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1064 636 396 55 68 chr12 62904148 62904907 -58352623 - MTE-int LTR MaLR -44 1536 788 6 1064 379 139 23 57 chr12 62905571 62905747 -58351783 + (TA)n Simple_repeat Simple_repeat 2 171 0 6 1064 225 167 30 15 chr12 62905752 62905819 -58351711 + (CTATA)n Simple_repeat Simple_repeat 3 70 0 6 1064 318 229 11 98 chr12 62906020 62906112 -58351418 - MTEb LTR MaLR -293 86 3 6 1064 230 313 86 17 chr12 62906395 62906512 -58351018 - MTE-int LTR MaLR -1099 481 357 6 1064 214 359 111 52 chr12 62906570 62906705 -58350825 - B1F1 SINE Alu -6 143 1 6 1064 737 177 0 7 chr12 62906988 62907136 -58350394 + CT-rich Low_complexity Low_complexity 1 147 0 6 1064 670 178 52 0 chr12 62907153 62907288 -58350242 - B1_Mur4 SINE Alu -8 142 1 6 1064 24 0 0 0 chr12 62909434 62909458 -58348072 + AT_rich Low_complexity Low_complexity 1 24 0 6 1064 252 0 0 0 chr12 62909526 62909554 -58347976 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1064 1077 82 0 0 chr12 62909556 62909703 -58347827 - B1_Mm SINE Alu 0 147 1 6 1064 487 333 43 38 chr12 62910786 62910970 -58346560 + B3A SINE B2 1 185 -13 6 1064 382 336 78 0 chr12 62911451 62911567 -58345963 - RSINE1 SINE B4 -35 130 6 6 1064 214 371 42 17 chr12 62912160 62912278 -58345252 - L2b LINE L2 -217 3158 3038 6 1064 1578 178 80 19 chr12 62912688 62913035 -58344495 + Lx5 LINE L1 6684 7050 0 6 1064 2558 50 0 12 chr12 62914009 62914351 -58343179 + ORR1A1 LTR MaLR 1 338 -8 6 1064 190 326 102 31 chr12 62914365 62914463 -58343067 - MIRb SINE MIR -16 252 148 6 1065 305 351 30 38 chr12 62915133 62915266 -58342264 - B1F2 SINE Alu -13 136 5 6 1065 7661 23 0 0 chr12 62915667 62916578 -58340952 - L1_Mm LINE L1 -1811 4072 3162 6 1065 863 20 0 0 chr12 62916579 62916677 -58340853 + L1Md_T LINE L1 5489 5586 -297 6 1065 8929 5 0 0 chr12 62916677 62917673 -58339857 + L1Md_T LINE L1 5587 6582 0 6 1065 560 279 102 24 chr12 62918315 62918602 -58338928 - MTD LTR MaLR -69 350 10 6 1065 456 262 20 33 chr12 62918614 62918764 -58338766 - MTD-int LTR MaLR -2 1256 1109 6 1065 324 0 0 0 chr12 62919276 62919312 -58338218 + (TATG)n Simple_repeat Simple_repeat 2 37 0 6 1065 378 0 0 0 chr12 62919387 62919429 -58338101 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1065 22 0 0 0 chr12 62919634 62919656 -58337874 + AT_rich Low_complexity Low_complexity 1 22 0 6 1065 21 36 0 0 chr12 62920060 62920088 -58337442 + AT_rich Low_complexity Low_complexity 1 28 0 6 1065 2908 71 5 15 chr12 62920573 62920973 -58336557 + MTA_Mm LTR MaLR 1 396 0 6 1065 434 200 0 0 chr12 62921237 62921317 -58336213 - RLTR22_Mus LTR ERVK -1728 80 1 6 1065 258 304 72 46 chr12 62921439 62921591 -58335939 - MLT1E1 LTR MaLR -362 292 137 6 1065 3428 23 2 0 chr12 62923901 62924296 -58333234 - MTA_Mm LTR MaLR 0 396 1 6 1065 21 0 0 0 chr12 62924627 62924648 -58332882 + AT_rich Low_complexity Low_complexity 1 21 0 6 1065 744 115 0 0 chr12 62924761 62924874 -58332656 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 6 1065 1756 59 180 0 chr12 62924938 62925193 -58332337 - L1_Mus2 LINE L1 0 6566 6266 6 1065 666 37 0 0 chr12 62925210 62925291 -58332239 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 6 1065 1187 87 17 28 chr12 62925291 62925469 -58332061 - B2_Mm1t SINE B2 -16 177 2 6 1065 438 36 0 0 chr12 62925853 62925909 -58331621 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1065 1141 48 7 0 chr12 62926121 62926266 -58331264 + B1_Mm SINE Alu 1 146 -1 6 1065 216 154 0 0 chr12 62926267 62926319 -58331211 + A-rich Low_complexity Low_complexity 1 52 0 6 1065 1034 270 53 35 chr12 62926677 62927076 -58330454 + L1_Mur3 LINE L1 5394 5799 -81 6 1065 309 264 0 14 chr12 62928672 62928745 -58328785 - L1MEg LINE L1 -4132 1952 1881 6 1065 1072 82 7 0 chr12 62928745 62928892 -58328638 - B1_Mus1 SINE Alu 0 148 1 6 1065 286 254 119 0 chr12 62929118 62929252 -58328278 - L1MA8 LINE L1 -56 6235 6086 6 1065 3023 109 11 0 chr12 62930833 62931274 -58326256 + Lx3_Mus LINE L1 6561 7006 -3 6 1065 186 43 0 0 chr12 62931286 62931309 -58326221 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1065 529 170 9 9 chr12 62931346 62931459 -58326071 + GA-rich Low_complexity Low_complexity 2 114 0 6 1065 12045 102 38 66 chr12 62931505 62932374 -58325156 + L1_Mur1 LINE L1 1465 2347 -1567 6 1065 333 0 0 0 chr12 62932374 62932411 -58325119 + (TAA)n Simple_repeat Simple_repeat 2 38 0 6 1065 12045 116 38 66 chr12 62932411 62934125 -58323405 + L1_Mur1 LINE L1 2348 3989 -1897 6 1065 6978 130 16 4 chr12 62934126 62935677 -58321853 + L1_Mus4 LINE L1 5060 6631 -5 6 1065 289 346 114 38 chr12 62936186 62936318 -58321212 + B3A SINE B2 67 208 -8 6 1065 21 36 0 0 chr12 62937254 62937282 -58320248 + AT_rich Low_complexity Low_complexity 1 28 0 6 1065 2719 93 2 22 chr12 62937454 62937862 -58319668 - MTB LTR MaLR 0 400 1 6 1065 22 35 0 0 chr12 62937997 62938026 -58319504 + AT_rich Low_complexity Low_complexity 1 29 0 6 1065 23 0 0 0 chr12 62938132 62938155 -58319375 + AT_rich Low_complexity Low_complexity 1 23 0 6 1065 402 21 0 0 chr12 62940018 62940065 -58317465 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1065 438 20 0 0 chr12 62940065 62940115 -58317415 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1065 1821 241 55 69 chr12 62942040 62942619 -58314911 - MARNA DNA Mariner -4 582 12 6 1065 355 327 18 46 chr12 62942856 62942965 -58314565 + MIR3 SINE MIR 75 180 -28 6 1065 322 244 66 25 chr12 62945493 62945615 -58311915 + RSINE1 SINE B4 1 127 -38 6 1065 280 83 0 0 chr12 62946539 62946587 -58310943 - Lx2 LINE L1 0 6997 6950 6 1065 508 76 114 0 chr12 62946584 62946663 -58310867 + Lx LINE L1 6288 6375 -279 6 1065 217 300 0 0 chr12 62946679 62946729 -58310801 - ID_B1 SINE B4 -90 134 85 6 1065 384 59 0 0 chr12 62949111 62949162 -58308368 + (TAA)n Simple_repeat Simple_repeat 3 53 0 6 1065 451 331 7 54 chr12 62949229 62949376 -58308154 + B3 SINE B2 1 140 -76 6 1065 303 28 0 0 chr12 62949376 62949412 -58308118 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1065 3041 45 3 8 chr12 62949426 62949809 -58307721 - L1Md_F2 LINE L1 -14 6568 6188 6 1065 882 124 0 43 chr12 62949910 62950096 -58307434 - L1_Mus4 LINE L1 0 6636 6459 6 1065 374 57 19 0 chr12 62951739 62951792 -58305738 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1065 205 231 19 19 chr12 62952767 62952820 -58304710 + (CATA)n Simple_repeat Simple_repeat 1 53 0 6 1065 562 194 8 23 chr12 62952906 62953038 -58304492 - Lx5 LINE L1 0 7050 6921 6 1065 6566 107 31 13 chr12 62953040 62954090 -58303440 - L1_Mur1 LINE L1 -648 5238 4170 6 1065 559 0 28 0 chr12 62954150 62954221 -58303309 + (TTTCC)n Simple_repeat Simple_repeat 1 73 0 6 1065 441 0 0 0 chr12 62954221 62954270 -58303260 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 6 1065 1022 60 0 8 chr12 62954270 62954404 -58303126 - B1_Mus1 SINE Alu -14 134 2 6 1065 180 0 0 0 chr12 62954457 62954477 -58303053 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1065 24 32 0 0 chr12 62955014 62955045 -58302485 + AT_rich Low_complexity Low_complexity 1 31 0 6 1065 6138 115 38 25 chr12 62956258 62957271 -58300259 - Lx3_Mus LINE L1 0 7009 5984 6 1065 297 51 0 0 chr12 62957512 62957551 -58299979 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 6 1065 238 419 78 0 chr12 62957559 62957688 -58299842 - RSINE1 SINE B4 -23 142 4 6 1065 23 0 0 0 chr12 62957745 62957768 -58299762 + AT_rich Low_complexity Low_complexity 1 23 0 6 1065 192 179 0 0 chr12 62958469 62958508 -58299022 + T-rich Low_complexity Low_complexity 1 39 0 6 1065 219 36 0 0 chr12 62959835 62959863 -58297667 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1065 180 0 0 0 chr12 62960112 62960132 -58297398 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1065 22 56 0 0 chr12 62960380 62960416 -58297114 + AT_rich Low_complexity Low_complexity 1 36 0 6 1065 451 350 6 19 chr12 62960438 62960598 -58296932 - RSINE1 SINE B4 -6 159 2 6 1065 22 0 0 0 chr12 62961019 62961041 -58296489 + AT_rich Low_complexity Low_complexity 1 22 0 6 1065 21 0 0 0 chr12 62961170 62961191 -58296339 + AT_rich Low_complexity Low_complexity 1 21 0 6 1065 27 29 0 0 chr12 62961292 62961326 -58296204 + AT_rich Low_complexity Low_complexity 1 34 0 6 1065 302 333 97 31 chr12 62961625 62961851 -58295679 - L1MB5 LINE L1 -172 6603 6363 6 1065 263 283 23 8 chr12 62962311 62962439 -58295091 - L1MB5 LINE L1 -754 6031 5902 6 1065 268 374 46 18 chr12 62962573 62962682 -58294848 - RSINE1 SINE B4 -6 159 48 6 1065 470 204 9 0 chr12 62962687 62962795 -58294735 + (TATG)n Simple_repeat Simple_repeat 3 111 0 6 1065 313 346 83 17 chr12 62963490 62963731 -58293799 - L1MB5 LINE L1 -3604 3143 2887 6 1065 259 265 71 0 chr12 62964322 62964420 -58293110 - L1MB5 LINE L1 -6452 155 51 6 1065 312 91 0 0 chr12 62966171 62966215 -58291315 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1065 229 230 0 51 chr12 62966663 62966741 -58290789 + GA-rich Low_complexity Low_complexity 1 74 0 6 1065 231 103 136 17 chr12 62967163 62967222 -58290308 - Lx5 LINE L1 -177 6873 6808 6 1065 428 252 129 8 chr12 62967232 62967364 -58290166 + Lx5 LINE L1 6903 7050 0 6 1065 29 28 0 0 chr12 62967397 62967433 -58290097 + AT_rich Low_complexity Low_complexity 1 36 0 6 1065 277 271 0 0 chr12 62967801 62967871 -58289659 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1065 304 342 43 53 chr12 62967873 62968080 -58289450 - B3 SINE B2 -11 205 1 6 1065 1087 223 26 4 chr12 62968042 62968276 -58289254 + 7SK RNA RNA 1 239 -92 6 1065 282 116 0 0 chr12 62968468 62968511 -58289019 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1065 552 106 0 0 chr12 62968980 62969065 -58288465 + (TG)n Simple_repeat Simple_repeat 1 85 0 6 1065 263 365 34 17 chr12 62969079 62969196 -58288334 - RSINE1 SINE B4 -20 145 27 6 1065 393 256 107 33 chr12 62969897 62970018 -58287512 + RSINE1 SINE B4 8 137 -28 7 1065 4109 96 36 3 chr12 62970163 62970768 -58286762 - L1_Mus3 LINE L1 -8 6630 6006 7 1065 699 101 0 0 chr12 62970770 62970869 -58286661 + L1_Mus3 LINE L1 5919 6017 -621 7 1065 1317 86 21 0 chr12 62971220 62971406 -58286124 + B2_Mm2 SINE B2 1 190 -5 7 1065 930 66 0 0 chr12 62972711 62972833 -58284697 + (TCTCC)n Simple_repeat Simple_repeat 2 123 0 7 1065 1800 297 4 17 chr12 62972843 62973319 -58284211 - Lx6 LINE L1 -26 7434 6965 7 1065 408 40 0 0 chr12 62973458 62973508 -58284022 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1065 241 217 58 0 chr12 62973521 62973590 -58283940 - Lx9 LINE L1 -171 7473 7401 7 1065 973 301 118 36 chr12 62974139 62974724 -58282806 - Lx9 LINE L1 -230 7414 6782 7 1065 182 250 78 0 chr12 62975332 62975396 -58282134 + L3 LINE CR1 2127 2195 -2294 7 1065 270 56 0 0 chr12 62975602 62975638 -58281892 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1065 958 236 18 18 chr12 62975643 62975872 -58281658 - Lx4B LINE L1 -7 7051 6823 7 1065 9721 164 27 27 chr12 62975872 62977841 -58279689 - Lx5 LINE L1 -1102 5948 3973 7 1065 479 95 24 0 chr12 62977851 62977935 -58279595 - L1_Mus3 LINE L1 -6 6632 6547 7 1065 384 22 0 0 chr12 62978344 62978389 -58279141 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1065 463 298 32 0 chr12 62978680 62978761 -58278769 - Lx9 LINE L1 -991 6653 6572 7 1065 3582 132 17 12 chr12 62978761 62979337 -58278193 - Lx2 LINE L1 0 6997 6419 7 1065 463 298 32 0 chr12 62979337 62979379 -58278151 - Lx9 LINE L1 -1073 6571 6527 7 1065 392 242 120 0 chr12 62979383 62979527 -58278003 + B3 SINE B2 30 196 -2 7 1065 348 305 0 0 chr12 62979595 62979677 -58277853 - Lx9 LINE L1 -1142 6502 6421 7 1065 351 0 0 0 chr12 62979678 62979717 -58277813 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1065 1026 269 20 36 chr12 62979741 62980046 -58277484 + Lx9 LINE L1 6900 7199 -445 7 1065 478 262 71 0 chr12 62980090 62980258 -58277272 + Lx9 LINE L1 7314 7493 -151 7 1065 30 27 0 0 chr12 62980390 62980427 -58277103 + AT_rich Low_complexity Low_complexity 1 37 0 7 1065 996 229 101 11 chr12 62980447 62980725 -58276805 - RMER6C LTR ERVK 0 690 388 7 1065 22 0 0 0 chr12 62980740 62980762 -58276768 + AT_rich Low_complexity Low_complexity 1 22 0 7 1065 21 36 0 0 chr12 62981079 62981107 -58276423 + AT_rich Low_complexity Low_complexity 1 28 0 7 1065 5063 60 6 0 chr12 62981256 62981909 -58275621 - L1Md_F2 LINE L1 0 6582 5926 7 1065 474 113 8 42 chr12 62982420 62982540 -58274990 + (TA)n Simple_repeat Simple_repeat 2 117 0 7 1065 3382 156 28 5 chr12 62982785 62983384 -58274146 + Lx3C LINE L1 6363 6975 -1 7 1065 2218 200 63 2 chr12 62983572 62984176 -58273354 - Lx2B LINE L1 -931 6069 5424 7 1065 23 0 0 0 chr12 62984233 62984256 -58273274 + AT_rich Low_complexity Low_complexity 1 23 0 7 1065 2320 242 97 36 chr12 62984656 62984874 -58272656 - RLTR40 LTR ERVK -4 813 587 7 1065 693 0 0 0 chr12 62984874 62984951 -58272579 + (TC)n Simple_repeat Simple_repeat 1 77 0 7 1065 2320 242 97 36 chr12 62984951 62985482 -58272048 - RLTR40 LTR ERVK -231 586 19 7 1065 1745 53 0 4 chr12 62987813 62988039 -58269491 + L1_Mus1 LINE L1 6341 6565 -2 7 1065 636 14 0 0 chr12 62988316 62988389 -58269141 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 1065 192 77 0 0 chr12 62988697 62988723 -58268807 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1065 350 341 39 31 chr12 62989641 62989771 -58267759 + B3 SINE B2 2 132 -84 7 1065 1145 38 121 0 chr12 62990008 62990165 -58267365 - L1Md_F2 LINE L1 0 6582 6407 7 1065 2744 70 0 8 chr12 62990165 62990839 -58266691 + L1Md_F LINE L1 878 1548 -4335 7 1065 324 0 0 0 chr12 62992433 62992469 -58265061 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1065 1442 117 17 4 chr12 62993033 62993273 -58264257 - L1VL4 LINE L1 -5459 843 601 7 1065 521 121 0 0 chr12 62993274 62993365 -58264165 + L1_Mus3 LINE L1 6548 6638 0 7 1065 210 189 19 0 chr12 62993368 62993421 -58264109 + A-rich Low_complexity Low_complexity 2 55 0 7 1065 372 111 0 0 chr12 62993436 62993499 -58264031 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 7 1065 6750 65 1 21 chr12 62993504 62994460 -58263070 + L1Md_Gf LINE L1 269 1305 -5355 7 1065 15373 19 1 1 chr12 62994453 62996258 -58261272 + L1Md_T LINE L1 3782 5586 -297 7 1065 8376 33 0 0 chr12 62996258 62997252 -58260278 + L1Md_T LINE L1 5587 6580 -2 7 1065 191 278 13 77 chr12 62997650 62997728 -58259802 + MIRb SINE MIR 53 125 -137 7 1065 22 70 0 0 chr12 62998326 62998369 -58259161 + AT_rich Low_complexity Low_complexity 1 43 0 7 1065 2107 271 67 15 chr12 62998584 62998911 -58258619 + Lx9 LINE L1 6330 6658 -986 7 1065 480 35 0 0 chr12 62998911 62998969 -58258561 + (GA)n Simple_repeat Simple_repeat 2 59 0 7 1065 1083 16 0 0 chr12 62998970 62999095 -58258435 + (GGAA)n Simple_repeat Simple_repeat 4 128 0 7 1065 2107 271 67 15 chr12 62999095 62999433 -58258097 + Lx9 LINE L1 6659 7029 -615 7 1065 701 53 0 11 chr12 63000159 63000254 -58257276 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 1065 504 32 0 0 chr12 63000550 63000612 -58256918 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1065 345 164 0 0 chr12 63001326 63001381 -58256149 + Lx2 LINE L1 6186 6240 -757 3 1065 206 107 88 18 chr12 63001715 63001772 -58255758 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 4 1065 205 196 0 21 chr12 63001768 63001815 -58255715 + (TAG)n Simple_repeat Simple_repeat 3 48 0 5 1065 273 349 72 18 chr12 63002407 63002518 -58255012 + PB1D10 SINE Alu 1 117 0 6 1065 1675 205 48 49 chr12 63002626 63003263 -58254267 - RLTR20B3 LTR ERVK 0 577 1 7 1065 23 33 0 0 chr12 63003531 63003561 -58253969 + AT_rich Low_complexity Low_complexity 1 30 0 8 1065 192 127 55 0 chr12 63003697 63003752 -58253778 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 9 1065 393 216 88 0 chr12 63004445 63004547 -58252983 - URR1B DNA MER1_type -2 223 113 1 1065 219 36 0 0 chr12 63004689 63004717 -58252813 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1065 247 158 0 0 chr12 63004785 63004823 -58252707 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1065 854 180 6 0 chr12 63004824 63005002 -58252528 + (TA)n Simple_repeat Simple_repeat 1 179 0 1 1065 22 70 0 0 chr12 63005038 63005081 -58252449 + AT_rich Low_complexity Low_complexity 1 43 0 1 1065 347 149 67 7 chr12 63005128 63005277 -58252253 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 1 1065 6737 138 14 12 chr12 63005955 63007894 -58249636 - L1_Mus4 LINE L1 -1 6635 4694 1 1065 257 261 14 0 chr12 63008624 63008693 -58248837 - MLT1J1 LTR MaLR -15 429 360 1 1065 705 286 14 19 chr12 63009688 63009898 -58247632 + B3 SINE B2 1 209 -7 1 1065 3372 219 85 70 chr12 63009914 63010133 -58247397 - Lx5 LINE L1 -4 7046 6822 1 1065 198 0 0 0 chr12 63010133 63010155 -58247375 + (CAGG)n Simple_repeat Simple_repeat 1 22 0 2 1065 3372 219 85 70 chr12 63010155 63010728 -58246802 - Lx5 LINE L1 -229 6821 6265 1 1065 467 146 0 0 chr12 63010728 63010810 -58246720 + L1_Mus3 LINE L1 6544 6625 -13 2 1065 3372 219 85 70 chr12 63010810 63011026 -58246504 - Lx5 LINE L1 -786 6264 6024 1 1065 6022 195 33 9 chr12 63011019 63012299 -58245231 - Lx5 LINE L1 -491 5386 4076 1 1065 21 0 0 0 chr12 63013938 63013959 -58243571 + AT_rich Low_complexity Low_complexity 1 21 0 2 1065 23 33 0 0 chr12 63014783 63014813 -58242717 + AT_rich Low_complexity Low_complexity 1 30 0 2 1065 21 0 0 0 chr12 63015116 63015137 -58242393 + AT_rich Low_complexity Low_complexity 1 21 0 2 1065 239 418 10 0 chr12 63015286 63015389 -58242141 + PB1D10 SINE Alu 1 104 -13 2 1065 352 329 99 48 chr12 63015524 63015819 -58241711 + MTE2a LTR MaLR 60 404 -17 2 1065 25 90 0 0 chr12 63015822 63015889 -58241641 + AT_rich Low_complexity Low_complexity 1 67 0 2 1065 303 241 45 11 chr12 63016049 63016137 -58241393 - L3 LINE CR1 -751 3738 3648 2 1065 498 343 0 7 chr12 63016508 63016646 -58240884 + RSINE1 SINE B4 5 141 -24 2 1065 25 90 0 0 chr12 63016986 63017053 -58240477 + AT_rich Low_complexity Low_complexity 1 67 0 3 1065 2560 161 11 16 chr12 63017196 63017453 -58240077 + Lx2 LINE L1 6550 6806 -191 3 1065 1620 129 11 84 chr12 63017453 63017800 -58239730 + RLTRETN_Mm LTR ERVK 1 322 0 3 1065 2560 161 11 16 chr12 63017800 63017991 -58239539 + Lx2 LINE L1 6807 6996 -1 3 1065 25 65 0 0 chr12 63018056 63018102 -58239428 + AT_rich Low_complexity Low_complexity 1 46 0 3 1065 380 330 61 91 chr12 63018112 63018738 -58238792 - Lx9 LINE L1 -19 7625 7019 3 1065 439 292 133 15 chr12 63018776 63018971 -58238559 + L1_Rod LINE L1 4732 4949 -898 3 1065 2305 243 80 42 chr12 63019231 63019940 -58237590 + Lx2B LINE L1 6261 6996 -4 3 1065 648 304 31 62 chr12 63019944 63020016 -58237514 - MTE2a LTR MaLR -120 259 192 3 1065 1542 167 154 3 chr12 63020016 63020335 -58237195 - ORR1B2 LTR MaLR 0 367 1 3 1065 648 304 31 62 chr12 63020335 63020521 -58237009 - MTE2a LTR MaLR -188 191 9 3 1065 271 202 24 0 chr12 63021235 63021319 -58236211 + CT-rich Low_complexity Low_complexity 2 87 0 3 1065 379 230 29 20 chr12 63021563 63021665 -58235865 + U6 snRNA snRNA 4 106 -1 4 1065 202 200 0 0 chr12 63021825 63021865 -58235665 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 4 1065 740 250 0 7 chr12 63021865 63022010 -58235520 - B1_Mur4 SINE Alu -1 149 6 4 1065 353 331 0 92 chr12 63021872 63022036 -58235494 - ID_B1 SINE B4 -8 216 69 4 1065 635 248 8 8 chr12 63022036 63022166 -58235364 + B3 SINE B2 1 130 -86 4 1065 5094 154 75 8 chr12 63022639 63023537 -58233993 - RMER17B LTR ERVK 0 958 1 4 1065 300 279 166 42 chr12 63023621 63023714 -58233816 - L1M2 LINE L1 -553 5747 5649 4 1065 1968 156 61 23 chr12 63023714 63024108 -58233422 - RLTR9E LTR ERVK 0 409 1 4 1065 300 279 166 42 chr12 63024108 63024279 -58233251 - L1M2 LINE L1 -652 5648 5450 4 1065 287 370 14 43 chr12 63024823 63024964 -58232566 - B4A SINE B4 -154 138 2 4 1065 331 290 64 91 chr12 63025285 63025395 -58232135 - RSINE1 SINE B4 -54 111 5 4 1065 522 0 0 0 chr12 63025812 63025870 -58231660 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1065 4914 134 28 47 chr12 63027036 63027894 -58229636 - Lx2 LINE L1 0 6997 6156 5 1065 327 202 0 0 chr12 63029532 63029611 -58227919 + A-rich Low_complexity Low_complexity 1 79 0 5 1065 254 267 69 0 chr12 63029964 63030065 -58227465 + RLTR19-int LTR ERVK 2740 2847 -3290 5 1065 354 310 0 20 chr12 63030134 63030236 -58227294 + MYSERV6-int LTR ERVK 8544 8643 -316 5 1065 232 159 0 0 chr12 63030565 63030609 -58226921 + T-rich Low_complexity Low_complexity 3 46 0 5 1065 1163 61 7 0 chr12 63030610 63030757 -58226773 - B1_Mus1 SINE Alu 0 148 1 5 1065 290 75 0 36 chr12 63031762 63031817 -58225713 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 5 1065 2610 232 42 31 chr12 63031908 63032496 -58225034 - RMER20B LTR ERVK -2 625 31 5 1065 752 114 14 14 chr12 63033960 63034102 -58223428 + (TTTC)n Simple_repeat Simple_repeat 2 143 0 5 1065 399 239 23 0 chr12 63034543 63034631 -58222899 + MTC LTR MaLR 331 420 -1 6 1065 5491 191 39 24 chr12 63034631 63035869 -58221661 + MTC-int LTR MaLR 2 1257 -1 6 1065 1720 193 158 8 chr12 63035870 63036236 -58221294 + MTC LTR MaLR 1 421 0 6 1065 555 16 0 0 chr12 63036357 63036421 -58221109 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1065 480 323 8 0 chr12 63036538 63036662 -58220868 - ID_B1 SINE B4 -99 125 1 6 1065 22 35 0 0 chr12 63036785 63036814 -58220716 + AT_rich Low_complexity Low_complexity 1 29 0 6 1065 23 33 0 0 chr12 63037495 63037525 -58220005 + AT_rich Low_complexity Low_complexity 1 30 0 6 1065 506 90 22 0 chr12 63038013 63038102 -58219428 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 6 1065 715 296 15 0 chr12 63038872 63039078 -58218452 + B3 SINE B2 3 211 -5 6 1065 219 316 48 68 chr12 63039742 63039888 -58217642 + MIRb SINE MIR 91 233 -35 6 1065 318 148 0 0 chr12 63040145 63040199 -58217331 + (T)n Simple_repeat Simple_repeat 1 54 0 6 1065 477 119 23 23 chr12 63040199 63040285 -58217245 - B1_Mur4 SINE Alu 0 150 65 6 1065 632 216 33 94 chr12 63041125 63041370 -58216160 + Lx9 LINE L1 7288 7517 -127 7 1065 353 286 77 6 chr12 63041360 63041529 -58216001 + Lx9 LINE L1 7458 7638 -6 7 1065 694 295 59 8 chr12 63041554 63041807 -58215723 - Lx9 LINE L1 -312 7332 7067 7 1065 3687 242 60 6 chr12 63041813 63042678 -58214852 - Lx7 LINE L1 -396 7300 6389 7 1065 354 146 191 0 chr12 63042677 63042766 -58214764 + Lx9 LINE L1 7537 7642 -2 7 1065 186 171 0 0 chr12 63043347 63043388 -58214142 + A-rich Low_complexity Low_complexity 1 41 0 7 1065 205 204 23 0 chr12 63043460 63043504 -58214026 + T-rich Low_complexity Low_complexity 3 47 0 7 1065 477 0 0 0 chr12 63044985 63045038 -58212492 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1065 310 353 90 5 chr12 63045235 63045423 -58212107 + L2 LINE L2 2445 2648 -771 7 1066 21 100 0 0 chr12 63046142 63046212 -58211318 + AT_rich Low_complexity Low_complexity 1 70 0 7 1066 2529 219 88 26 chr12 63047151 63047719 -58209811 - RMER20B LTR ERVK -24 603 1 8 1066 311 292 142 0 chr12 63047956 63048062 -58209468 + B2_Mm2 SINE B2 1 121 -74 8 1066 375 98 0 0 chr12 63048081 63048142 -58209388 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 1066 263 138 35 0 chr12 63048175 63048233 -58209297 + (TATG)n Simple_repeat Simple_repeat 3 62 0 8 1066 459 0 0 0 chr12 63048923 63048974 -58208556 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 1066 1085 101 0 0 chr12 63049210 63049358 -58208172 + B1_Mus1 SINE Alu 1 148 0 8 1066 782 145 0 7 chr12 63049359 63049498 -58208032 + GA-rich Low_complexity Low_complexity 2 139 0 8 1066 25 31 0 0 chr12 63049556 63049588 -58207942 + AT_rich Low_complexity Low_complexity 1 32 0 8 1066 273 218 41 131 chr12 63049907 63050028 -58207502 - MLT1A0 LTR MaLR -23 367 268 8 1066 831 166 7 7 chr12 63050155 63050295 -58207235 - B1_Mus1 SINE Alu -2 146 7 8 1066 265 257 17 17 chr12 63050798 63050901 -58206629 + GA-rich Low_complexity Low_complexity 3 108 0 9 1066 5836 82 12 14 chr12 63050901 63051708 -58205822 - RLTR13D1 LTR ERVK 0 806 1 9 1066 265 257 17 17 chr12 63051708 63051737 -58205793 + polypurine Low_complexity Low_complexity 109 135 0 9 1066 1227 72 0 16 chr12 63051737 63051920 -58205610 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1066 265 257 17 17 chr12 63051920 63051964 -58205566 + polypurine Low_complexity Low_complexity 136 179 0 9 1066 6641 123 22 0 chr12 63052017 63053017 -58204513 + Lx3_Mus LINE L1 5623 6644 -365 9 1066 716 69 0 73 chr12 63053417 63053527 -58204003 + B2_Mm2 SINE B2 8 109 -86 9 1066 624 137 0 0 chr12 63054607 63054709 -58202821 + (TA)n Simple_repeat Simple_repeat 1 102 0 9 1066 475 284 137 14 chr12 63054997 63055208 -58202322 + RMER15 LTR ERVL 324 560 -15 9 1066 21 71 0 0 chr12 63055244 63055286 -58202244 + AT_rich Low_complexity Low_complexity 1 42 0 9 1066 38 0 0 0 chr12 63056055 63056093 -58201437 + AT_rich Low_complexity Low_complexity 1 38 0 1 1066 2871 104 2 62 chr12 63056373 63056844 -58200686 + MT2B LTR ERVL 1 443 -158 1 1066 390 110 14 14 chr12 63057154 63057228 -58200302 - Lx LINE L1 -1024 5985 5912 1 1066 402 130 0 0 chr12 63057228 63057247 -58200283 + (TC)n Simple_repeat Simple_repeat 1 19 0 1 1066 1118 113 0 11 chr12 63057247 63057426 -58200104 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1 1066 402 130 0 0 chr12 63057426 63057475 -58200055 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1066 2395 95 13 0 chr12 63057476 63057849 -58199681 - Lx LINE L1 -1090 5919 5519 1 1066 838 129 41 0 chr12 63057847 63057994 -58199536 + Lx3_Mus LINE L1 6803 6955 -54 1 1066 226 293 68 87 chr12 63057994 63058155 -58199375 + MER21B LTR ERV1 607 764 -99 1 1066 212 0 36 0 chr12 63058158 63058186 -58199344 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1066 633 61 0 0 chr12 63058189 63058271 -58199259 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1066 216 167 0 0 chr12 63058312 63058360 -58199170 + T-rich Low_complexity Low_complexity 1 48 0 1 1066 29 0 0 0 chr12 63058376 63058405 -58199125 + AT_rich Low_complexity Low_complexity 1 29 0 1 1066 865 280 17 13 chr12 63058405 63058644 -58198886 - Lx6 LINE L1 -33 7427 7188 1 1066 5655 147 15 7 chr12 63058685 63059518 -58198012 + L1VL4 LINE L1 29 860 -5442 1 1066 225 0 0 0 chr12 63059518 63059543 -58197987 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1066 13765 100 22 4 chr12 63059543 63061676 -58195854 + L1VL4 LINE L1 861 3040 -519 1 1066 7425 138 4 18 chr12 63061666 63063709 -58193821 + L1_Mus4 LINE L1 4632 6636 0 1 1066 315 289 0 91 chr12 63064438 63064537 -58192993 + B4A SINE B4 34 123 -169 1 1066 325 253 47 29 chr12 63064652 63064823 -58192707 + (CA)n Simple_repeat Simple_repeat 2 175 0 1 1066 312 178 0 0 chr12 63065411 63065484 -58192046 + T-rich Low_complexity Low_complexity 1 73 0 1 1066 38963 46 12 3 chr12 63065488 63071787 -58185743 - L1Md_T LINE L1 -2 6580 263 1 1066 558 234 0 0 chr12 63071788 63071912 -58185618 - L1Md_T LINE L1 -6291 325 202 1 1066 864 181 40 0 chr12 63071973 63072150 -58185380 + B2_Mm2 SINE B2 12 195 0 1 1066 24 0 0 0 chr12 63072165 63072189 -58185341 + AT_rich Low_complexity Low_complexity 1 24 0 1 1066 547 292 83 0 chr12 63072966 63073134 -58184396 - B4A SINE B4 -4 288 107 1 1066 2425 135 23 28 chr12 63073225 63073652 -58183878 - Lx LINE L1 -1 6653 6229 1 1066 483 128 0 0 chr12 63073653 63073731 -58183799 + BC1_Mm scRNA scRNA 13 90 -62 1 1066 4024 120 16 6 chr12 63073743 63074390 -58183140 - L1_Mm LINE L1 -1605 4278 3626 1 1066 35 63 0 0 chr12 63074726 63074789 -58182741 + AT_rich Low_complexity Low_complexity 1 63 0 1 1066 238 289 157 0 chr12 63075234 63075317 -58182213 + B1F2 SINE Alu 27 122 -27 1 1066 339 85 0 0 chr12 63076259 63076306 -58181224 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1 1066 7458 83 6 1 chr12 63076354 63077567 -58179963 - L1Md_F2 LINE L1 -12 6570 5353 1 1066 1438 218 123 35 chr12 63077567 63078142 -58179388 + RMER17A2 LTR ERVK 281 906 0 1 1066 396 0 0 0 chr12 63078314 63078358 -58179172 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1066 520 293 0 0 chr12 63078358 63078474 -58179056 - RSINE1 SINE B4 -26 139 24 1 1066 460 352 20 47 chr12 63078674 63078972 -58178558 - B4A SINE B4 0 292 3 1 1066 203 128 51 0 chr12 63079327 63079366 -58178164 + CT-rich Low_complexity Low_complexity 3 43 0 1 1066 1347 100 5 0 chr12 63079366 63079556 -58177974 - B2_Mm1t SINE B2 0 193 3 1 1066 679 75 9 0 chr12 63079556 63079662 -58177868 + L1Md_F3 LINE L1 6464 6570 -14 1 1066 624 261 0 32 chr12 63079946 63080104 -58177426 + Lx7 LINE L1 7539 7691 -5 1 1066 28 0 0 0 chr12 63081187 63081215 -58176315 + AT_rich Low_complexity Low_complexity 1 28 0 1 1066 1130 68 0 0 chr12 63083118 63083265 -58174265 + B1_Mm SINE Alu 1 147 0 1 1066 528 327 23 41 chr12 63083556 63083728 -58173802 + B3A SINE B2 1 169 -29 1 1066 551 301 54 29 chr12 63083832 63084037 -58173493 - ORR1E LTR MaLR -37 322 113 1 1066 236 288 0 0 chr12 63084254 63084320 -58173210 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1066 741 303 14 24 chr12 63084463 63084676 -58172854 + B3 SINE B2 6 216 0 1 1066 229 330 82 9 chr12 63084942 63085052 -58172478 + ORR1B2 LTR MaLR 98 215 -152 1 1066 365 229 23 149 chr12 63085092 63085313 -58172217 + RLTR19-int LTR ERVK 3179 3371 -2766 1 1066 279 141 0 30 chr12 63085385 63085451 -58172079 + Lx LINE L1 6585 6648 -6 1 1066 609 178 41 136 chr12 63085452 63085673 -58171857 + RLTR19-int LTR ERVK 3524 3723 -2414 1 1066 570 159 0 21 chr12 63085678 63085774 -58171756 - LSU-rRNA_Hsa rRNA rRNA -740 4295 4202 1 1066 827 287 96 59 chr12 63085908 63086449 -58171081 + RMER17C-int LTR ERVK 2665 3225 -13 1 1066 234 319 0 0 chr12 63086593 63086665 -58170865 + CT-rich Low_complexity Low_complexity 1 72 0 1 1066 26 64 0 0 chr12 63086963 63087010 -58170520 + AT_rich Low_complexity Low_complexity 1 47 0 1 1066 345 163 13 39 chr12 63087260 63087413 -58170117 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 1 1066 315 0 0 0 chr12 63087456 63087491 -58170039 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1066 540 0 0 0 chr12 63087491 63087550 -58169980 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1066 38 0 0 0 chr12 63087857 63087895 -58169635 + AT_rich Low_complexity Low_complexity 1 38 0 1 1066 254 169 38 25 chr12 63088228 63088307 -58169223 - Lx9 LINE L1 -9 7635 7556 1 1066 997 87 0 28 chr12 63088413 63088555 -58168975 - B1_Mus2 SINE Alu -9 138 1 1 1066 3922 119 6 30 chr12 63088607 63089250 -58168280 - RLTR5_Mm LTR ERV1 0 628 1 1 1066 2184 139 24 26 chr12 63089262 63089280 -58168250 + Lx3A LINE L1 6590 6605 -376 1 1066 240 35 0 0 chr12 63089280 63089309 -58168221 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1066 2184 139 24 26 chr12 63089309 63089667 -58167863 + Lx3A LINE L1 6606 6965 -16 1 1066 279 79 0 0 chr12 63089669 63089707 -58167823 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1 1066 1124 75 0 0 chr12 63089734 63089880 -58167650 - B1_Mus2 SINE Alu 0 147 2 1 1066 34 42 0 0 chr12 63089964 63090012 -58167518 + AT_rich Low_complexity Low_complexity 1 48 0 1 1066 266 215 0 0 chr12 63090484 63090549 -58166981 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 1066 189 132 0 0 chr12 63091285 63091323 -58166207 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1066 920 256 44 15 chr12 63091327 63091597 -58165933 + Lx5 LINE L1 5835 6112 -938 1 1066 245 218 244 33 chr12 63091622 63091712 -58165818 + RLTR41 LTR ERV1 62 170 -276 1 1066 7043 245 35 26 chr12 63091755 63094631 -58162899 - IAPLTR3-int LTR ERVK -423 7257 4330 1 1066 3380 266 60 50 chr12 63094630 63095881 -58161649 - IAPLTR3-int LTR ERVK -5558 1263 1 1 1066 2771 58 3 0 chr12 63095881 63096225 -58161305 - IAPLTR4 LTR ERVK 0 345 1 1 1066 759 156 15 15 chr12 63096225 63096362 -58161168 + RLTR41 LTR ERV1 310 446 0 1 1066 3409 258 37 39 chr12 63096362 63097302 -58160228 + Lx5 LINE L1 6087 7043 -7 1 1066 184 271 11 56 chr12 63097487 63097577 -58159953 - L2a LINE L2 -85 3341 3256 1 1066 208 222 40 27 chr12 63097653 63097727 -58159803 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 1 1066 357 217 40 40 chr12 63098415 63098540 -58158990 - L1M2 LINE L1 -616 5684 5560 1 1066 430 274 25 25 chr12 63099205 63099366 -58158164 - L1M2 LINE L1 -770 5530 5370 1 1066 603 275 103 66 chr12 63099395 63099523 -58158007 + L1MA5 LINE L1 5683 5802 -498 1 1066 4093 56 2 2 chr12 63099523 63100026 -58157504 + RLTR1C LTR ERV1 1 503 0 1 1066 603 275 103 66 chr12 63100026 63100322 -58157208 + L1MA5 LINE L1 5803 6122 -178 1 1066 330 91 0 0 chr12 63100872 63100927 -58156603 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1066 2083 286 41 21 chr12 63102065 63102720 -58154810 - Lx8 LINE L1 -237 7236 6569 1 1066 7035 181 18 12 chr12 63102855 63104750 -58152780 - Lx3C LINE L1 -2 6974 5069 1 1066 5690 71 0 0 chr12 63104874 63105604 -58151926 - L1_Mus1 LINE L1 0 6567 5838 1 1066 1363 207 173 0 chr12 63105739 63106068 -58151462 - MTD LTR MaLR -15 404 19 1 1066 351 119 0 0 chr12 63106080 63106147 -58151383 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 1 1066 446 252 41 14 chr12 63106164 63106309 -58151221 - MTD-int LTR MaLR -13 1245 1097 1 1066 339 215 37 80 chr12 63106321 63106508 -58151022 + RMER17C LTR ERVK 95 273 -137 1 1066 575 265 191 11 chr12 63106531 63106714 -58150816 + B3 SINE B2 1 216 0 1 1066 2697 269 52 48 chr12 63106724 63107630 -58149900 - MTD-int LTR MaLR -160 1098 189 1 1066 715 278 45 74 chr12 63108536 63109022 -58148508 - L1M3 LINE L1 -1960 3887 3416 1 1066 867 308 11 8 chr12 63109326 63109591 -58147939 + MTD LTR MaLR 3 268 -151 1 1066 567 43 0 0 chr12 63109593 63109663 -58147867 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1066 2459 106 34 16 chr12 63109710 63110092 -58147438 - Lx3_Mus LINE L1 0 7009 6621 1 1066 7468 93 6 3 chr12 63110094 63111281 -58146249 + Lx3_Mus LINE L1 5457 6643 -366 1 1066 281 94 57 49 chr12 63111424 63111547 -58145983 + (CAAA)n Simple_repeat Simple_repeat 4 127 0 1 1066 263 260 142 116 chr12 63111577 63111964 -58145566 - RMER10A LTR ERVL -28 414 18 1 1066 456 19 0 0 chr12 63112099 63112152 -58145378 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1 1066 362 103 34 11 chr12 63112211 63112299 -58145231 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1066 386 281 0 166 chr12 63112362 63112537 -58144993 - ORR1D1 LTR MaLR -228 146 1 1 1066 769 151 110 0 chr12 63113082 63113228 -58144302 - RLTR31A_Mm LTR ERVK -422 162 1 1 1066 3342 80 2 24 chr12 63113284 63113743 -58143787 - RLTR1D LTR ERV1 0 605 157 1 1066 21 0 0 0 chr12 63113859 63113880 -58143650 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 21 0 0 0 chr12 63113902 63113923 -58143607 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 389 319 0 19 chr12 63114624 63114832 -58142698 - Lx9 LINE L1 -425 7219 6886 1 1066 3085 142 60 13 chr12 63114849 63115417 -58142113 - Lx3A LINE L1 0 6997 6400 1 1066 3469 87 30 2 chr12 63115419 63115915 -58141615 + RLTR13D5 LTR ERVK 514 1023 0 1 1066 5225 132 1 6 chr12 63115915 63116737 -58140793 - L1_Mur1 LINE L1 -92 5794 4977 1 1066 3006 29 0 0 chr12 63116950 63117296 -58140234 - ORR1A0 LTR MaLR 0 346 1 1 1066 274 300 36 18 chr12 63117356 63117468 -58140062 + (CATG)n Simple_repeat Simple_repeat 2 115 0 1 1066 450 323 68 35 chr12 63117475 63117870 -58139660 - Lx9 LINE L1 -127 7517 7110 2 1066 1026 88 0 0 chr12 63117872 63118009 -58139521 + B1_Mm SINE Alu 2 138 -9 2 1066 546 286 16 42 chr12 63118057 63118247 -58139283 + B3A SINE B2 1 185 -13 2 1066 21 36 0 0 chr12 63118249 63118277 -58139253 + AT_rich Low_complexity Low_complexity 1 28 0 2 1066 2046 119 9 34 chr12 63118394 63118588 -58138942 - L1_Mus3 LINE L1 -3 6635 6451 2 1066 2786 95 19 121 chr12 63118588 63119125 -58138405 - RLTR45 LTR ERVK 0 482 1 2 1066 2046 119 9 34 chr12 63119125 63119279 -58138251 - L1_Mus3 LINE L1 -188 6450 6296 2 1066 620 207 66 0 chr12 63119481 63119602 -58137928 + B3 SINE B2 1 129 -87 2 1066 2729 285 24 8 chr12 63119802 63119980 -58137550 + Lx6 LINE L1 6567 6744 -716 2 1066 207 0 0 0 chr12 63119980 63120003 -58137527 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2 1066 2729 285 24 8 chr12 63120003 63120133 -58137397 + Lx6 LINE L1 6745 6880 -580 2 1066 540 73 0 0 chr12 63120133 63120215 -58137315 + (CAGAGA)n Simple_repeat Simple_repeat 1 82 0 2 1066 2729 285 24 8 chr12 63120215 63120619 -58136911 + Lx6 LINE L1 6881 7289 -171 2 1066 238 368 0 0 chr12 63120945 63121021 -58136509 + L2a LINE L2 3032 3107 -319 2 1066 989 138 5 37 chr12 63121021 63121209 -58136321 + L1_Mus4 LINE L1 6449 6630 -6 2 1066 198 0 0 0 chr12 63121253 63121275 -58136255 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1066 225 261 48 107 chr12 63121697 63121800 -58135730 - L4 LINE RTE -616 1413 1317 2 1066 244 395 37 43 chr12 63121804 63121992 -58135538 + MER58A DNA MER1_type 11 197 -27 2 1066 532 339 108 8 chr12 63122365 63122685 -58134845 + ORR1E LTR MaLR 1 375 -4 2 1066 231 65 0 0 chr12 63122834 63122880 -58134650 - L1_Mus4 LINE L1 0 6636 6591 2 1066 599 269 82 10 chr12 63123066 63123261 -58134269 - B3 SINE B2 -6 210 2 2 1066 389 260 0 210 chr12 63123554 63123783 -58133747 + URR1A DNA MER1_type 43 223 -3 2 1066 32 43 0 0 chr12 63123839 63123885 -58133645 + AT_rich Low_complexity Low_complexity 1 46 0 2 1066 1313 332 50 50 chr12 63124030 63124852 -58132678 + Lx8 LINE L1 5704 6525 -948 2 1066 755 352 56 15 chr12 63125314 63125709 -58131821 + Lx8 LINE L1 6521 6931 -542 2 1066 561 236 26 53 chr12 63125873 63125908 -58131622 + B1_Mur4 SINE Alu 2 32 -118 2 1066 2457 117 11 5 chr12 63125908 63126286 -58131244 - L1_Mus3 LINE L1 -10 6628 6249 2 1066 561 236 26 53 chr12 63126286 63126402 -58131128 + B1_Mur4 SINE Alu 33 149 -1 2 1066 3267 87 13 2 chr12 63127096 63127557 -58129973 + L1_Mus1 LINE L1 6102 6567 0 2 1066 264 314 87 74 chr12 63127959 63128269 -58129261 + L1MDa LINE L1 1759 2072 -4561 2 1066 239 366 43 0 chr12 63128269 63128362 -58129168 + PB1D10 SINE Alu 6 102 -15 2 1066 180 0 0 0 chr12 63129491 63129511 -58128019 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1066 579 149 0 0 chr12 63129881 63129988 -58127542 + (GGA)n Simple_repeat Simple_repeat 2 108 0 2 1066 356 383 61 34 chr12 63130403 63130665 -58126865 - L1MCb LINE L1 -5207 838 570 2 1066 429 338 73 0 chr12 63130771 63130990 -58126540 - L1MCb LINE L1 -5479 566 332 2 1066 1091 75 7 0 chr12 63131802 63131949 -58125581 + B1_Mus1 SINE Alu 1 148 0 2 1066 58 99 0 0 chr12 63132043 63132234 -58125296 + AT_rich Low_complexity Low_complexity 1 191 0 2 1066 34622 68 2 2 chr12 63132547 63135632 -58121898 - L1Md_F2 LINE L1 0 6585 3500 2 1066 4221 27 0 0 chr12 63135632 63136114 -58121416 + LTRIS_Mm LTR ERV1 1 482 0 2 1066 34622 78 2 8 chr12 63136114 63139260 -58118270 - L1Md_F2 LINE L1 -2387 3499 278 2 1066 2710 231 90 27 chr12 63139381 63139497 -58118033 - RMER1A Other Other -6 1024 896 2 1066 441 0 0 0 chr12 63139497 63139546 -58117984 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1066 459 0 0 0 chr12 63139546 63139596 -58117934 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1066 2710 281 75 18 chr12 63139596 63140639 -58116891 - RMER1A Other Other -135 895 1 2 1066 826 263 65 73 chr12 63141118 63141594 -58115936 + RLTR12B LTR ERVK 47 518 -10 2 1066 638 226 0 0 chr12 63141627 63141742 -58115788 + B1_Mus1 SINE Alu 2 116 -32 2 1066 346 321 29 29 chr12 63141628 63141766 -58115764 + ID_B1 SINE B4 84 221 -3 2 1066 268 255 135 118 chr12 63141666 63141844 -58115686 + RLTR25B LTR ERVK 441 621 -407 2 1066 692 371 55 34 chr12 63141961 63142332 -58115198 - ERVL-B4-int LTR ERVL -1104 4610 4231 2 1066 657 218 140 15 chr12 63142332 63142532 -58114998 + URR1A DNA MER1_type 2 226 0 2 1066 692 371 55 34 chr12 63142532 63142779 -58114751 - ERVL-B4-int LTR ERVL -1484 4230 3979 2 1066 21 0 0 0 chr12 63143331 63143352 -58114178 + AT_rich Low_complexity Low_complexity 1 21 0 2 1066 250 316 67 15 chr12 63143852 63143987 -58113543 - ERVL-B4-int LTR ERVL -3418 2296 2155 2 1066 222 37 0 0 chr12 63144474 63144501 -58113029 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1066 1101 89 7 0 chr12 63144501 63144647 -58112883 - B1_Mus1 SINE Alu 0 148 2 2 1066 2099 148 32 8 chr12 63144697 63145066 -58112464 + Lx3A LINE L1 6601 6978 -3 2 1066 7506 78 11 6 chr12 63145072 63146096 -58111434 - L1Md_F2 LINE L1 -253 5630 4602 2 1066 7186 78 2 9 chr12 63146096 63147078 -58110452 + L1Md_F2 LINE L1 5605 6579 -3 2 1066 32 57 0 0 chr12 63147078 63147131 -58110399 + AT_rich Low_complexity Low_complexity 1 53 0 2 1066 265 214 28 14 chr12 63147131 63147202 -58110328 + RLTR20D LTR ERVK 268 339 -229 2 1066 403 329 0 42 chr12 63147554 63147719 -58109811 + Lx6 LINE L1 7277 7434 -26 2 1066 1526 86 19 0 chr12 63147877 63148087 -58109443 - ORR1A1 LTR MaLR 0 346 133 2 1066 231 421 56 32 chr12 63148105 63148321 -58109209 - LTR16A LTR ERVL -97 354 134 2 1066 264 21 40 40 chr12 63148513 63148563 -58108967 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 1066 1057 189 66 129 chr12 63149136 63149422 -58108108 + MT2A LTR ERVL 3 270 -263 2 1066 4736 64 0 7 chr12 63149568 63150181 -58107349 - L1Md_F2 LINE L1 -2 6580 5972 2 1066 185 154 26 0 chr12 63150657 63150696 -58106834 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2 1066 381 292 72 65 chr12 63150696 63150794 -58106736 + MT2A LTR ERVL 366 483 -80 2 1066 2701 64 0 36 chr12 63150794 63151152 -58106378 - IAPLTR4 LTR ERVK 0 345 1 2 1066 381 289 75 50 chr12 63151152 63151232 -58106298 + MT2A LTR ERVL 447 529 -4 2 1066 1716 181 226 81 chr12 63151615 63152218 -58105312 - RMER6C LTR ERVK 0 690 1 2 1066 326 404 29 58 chr12 63152860 63153170 -58104360 - MLT1A0 LTR MaLR -8 357 57 2 1066 252 292 33 22 chr12 63153238 63153329 -58104201 + RLTR19C LTR ERVK 34 125 -381 2 1066 285 210 60 75 chr12 63153762 63153896 -58103634 - Lx9 LINE L1 -2 7642 7511 2 1066 1054 242 87 26 chr12 63153893 63154203 -58103327 + Lx9 LINE L1 6721 7049 -595 2 1066 262 374 88 36 chr12 63154695 63155058 -58102472 - L2 LINE L2 -571 2848 2467 2 1066 26 98 0 0 chr12 63155080 63155162 -58102368 + AT_rich Low_complexity Low_complexity 1 82 0 2 1066 200 283 0 0 chr12 63155452 63155505 -58102025 + CT-rich Low_complexity Low_complexity 2 54 0 2 1066 489 205 47 32 chr12 63155731 63155885 -58101645 - Lx7 LINE L1 0 7696 7566 2 1066 654 106 21 0 chr12 63155914 63156008 -58101522 + B1_Mus1 SINE Alu 1 96 -52 2 1066 396 252 47 16 chr12 63156008 63156137 -58101393 - Lx7 LINE L1 -210 7486 7354 2 1066 36 40 0 0 chr12 63156150 63156200 -58101330 + AT_rich Low_complexity Low_complexity 1 50 0 2 1066 245 196 0 0 chr12 63156206 63156252 -58101278 - Lx7 LINE L1 -353 7343 7298 2 1066 40549 15 0 6 chr12 63156257 63162502 -58095028 - L1Md_A LINE L1 0 6582 381 2 1066 2467 272 28 1 chr12 63162504 63163181 -58094349 - Lx7 LINE L1 -387 7309 6615 2 1066 749 271 41 50 chr12 63163190 63163535 -58093995 + MT2B LTR ERVL 101 601 0 2 1066 802 174 5 125 chr12 63163601 63163785 -58093745 + URR1A DNA MER1_type 62 223 -3 2 1066 254 301 62 144 chr12 63163785 63163812 -58093718 - CYRA11_Mm Unknown Y-chromosome -465 152 142 2 1066 10743 188 61 13 chr12 63163812 63166027 -58091503 + MERVL_2A-int LTR ERVL 45 2367 -3394 2 1066 194 0 39 0 chr12 63166742 63166768 -58090762 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1066 657 0 0 0 chr12 63166793 63166866 -58090664 + (TTTC)n Simple_repeat Simple_repeat 3 75 0 2 1066 309 109 0 0 chr12 63166984 63167039 -58090491 + (T)n Simple_repeat Simple_repeat 1 55 0 2 1066 8552 212 49 2 chr12 63167415 63169179 -58088351 + MERVL_2A-int LTR ERVL 2354 4200 -1561 2 1066 546 131 25 133 chr12 63169186 63169239 -58088291 + MERVL_2A-int LTR ERVL 5481 5519 -242 2 1066 585 0 0 0 chr12 63169239 63169304 -58088226 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1066 2542 54 12 3 chr12 63169311 63169643 -58087887 - L1Md_F3 LINE L1 0 6584 6250 2 1066 546 131 25 133 chr12 63169643 63169739 -58087791 + MERVL_2A-int LTR ERVL 5527 5620 -141 2 1066 528 237 7 0 chr12 63169739 63169878 -58087652 - L1_Mur3 LINE L1 -1081 4799 4660 2 1066 231 27 216 0 chr12 63169951 63169988 -58087542 - L1_Mur3 LINE L1 -1227 4653 4609 2 1066 3461 160 51 5 chr12 63170000 63170609 -58086921 - Lx2 LINE L1 -1 6996 6360 2 1066 404 257 48 69 chr12 63170609 63170797 -58086733 - RLTR44A LTR ERVK 0 405 222 2 133 41106 6 0 0 chr12 63170797 63177264 -58080266 - L1Md_A LINE L1 -109 6473 7 2 1067 1258 204 51 85 chr12 63177268 63177563 -58079967 - RLTR44B LTR ERVK -114 335 51 2 1067 1345 185 26 19 chr12 63177580 63177845 -58079685 - Lx2 LINE L1 -632 6365 6099 2 1067 16665 82 8 52 chr12 63177865 63177876 -58079654 - L1_Mm LINE L1 -134 5749 5741 2 1067 4406 111 1 33 chr12 63177876 63178564 -58078966 - L1Md_F2 LINE L1 0 6582 5917 2 1067 16665 82 8 52 chr12 63178564 63181064 -58076466 - L1_Mm LINE L1 -143 5740 3348 2 1067 4868 169 23 6 chr12 63181058 63182261 -58075269 - Lx2 LINE L1 -854 6143 4918 2 1067 1319 230 39 28 chr12 63182251 63182712 -58074818 - L1_Mur3 LINE L1 -1273 4607 4142 2 1067 3308 214 61 1 chr12 63182718 63183470 -58074060 + L1_Mur3 LINE L1 3257 4038 -1842 2 1067 213 39 0 0 chr12 63183470 63183496 -58074034 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 2 1067 3308 214 61 1 chr12 63183496 63183575 -58073955 + L1_Mur3 LINE L1 4039 4137 -1743 2 1067 387 0 0 0 chr12 63184294 63184337 -58073193 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1067 342 0 0 0 chr12 63184337 63184374 -58073156 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1067 1176 54 0 0 chr12 63185084 63185231 -58072299 + B1_Mm SINE Alu 1 147 0 2 1067 631 261 157 104 chr12 63185657 63186059 -58071471 + RLTR23 LTR ERV1 8 430 0 2 1067 429 66 0 0 chr12 63186070 63186131 -58071399 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1067 3764 179 70 1 chr12 63186713 63187446 -58070084 + Lx4A LINE L1 6275 7057 -1 2 1067 822 147 0 0 chr12 63187460 63187603 -58069927 + (GGAA)n Simple_repeat Simple_repeat 1 143 0 2 1067 6144 200 27 18 chr12 63188404 63190070 -58067460 - Lx2B LINE L1 -24 6976 5293 2 1067 2169 54 0 11 chr12 63190083 63190363 -58067167 + L1Md_F2 LINE L1 5310 5586 -297 2 1067 8064 35 12 0 chr12 63190363 63191335 -58066195 + L1Md_F2 LINE L1 5587 6570 -12 2 1067 231 114 0 0 chr12 63191373 63191408 -58066122 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1067 7044 83 9 31 chr12 63191409 63192532 -58064998 - L1_Mus1 LINE L1 -2 6565 5467 2 1067 6541 120 3 0 chr12 63192532 63193525 -58064005 + L1_Mus1 LINE L1 4451 5446 -437 2 1067 340 121 17 0 chr12 63193520 63193578 -58063952 - Lx2B LINE L1 -633 5253 5195 2 1067 28 29 0 0 chr12 63193655 63193690 -58063840 + AT_rich Low_complexity Low_complexity 1 35 0 2 1067 237 311 119 6 chr12 63193903 63194071 -58063459 - L1M2 LINE L1 -409 5903 5717 3 1067 524 296 110 25 chr12 63194067 63194801 -58062729 - L1M2 LINE L1 -2726 3417 2621 3 1067 377 299 72 63 chr12 63194801 63194934 -58062596 - RCHARR1 DNA MER1_type 0 974 829 3 1067 441 54 0 0 chr12 63194934 63194990 -58062540 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1067 377 299 72 63 chr12 63194990 63195063 -58062467 - RCHARR1 DNA MER1_type -146 828 766 3 1067 407 239 35 0 chr12 63195066 63195179 -58062351 + L1_Mur3 LINE L1 439 555 -7173 3 1067 1744 213 52 2 chr12 63195268 63195575 -58061955 + L1_Mur3 LINE L1 860 1178 -6550 3 1067 414 0 0 0 chr12 63195575 63195621 -58061909 + (TAA)n Simple_repeat Simple_repeat 2 47 0 3 1067 11827 202 30 47 chr12 63195621 63197477 -58060053 + L1_Mur3 LINE L1 1179 2990 -2890 3 1067 552 15 0 0 chr12 63197477 63197542 -58059988 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1067 11827 259 29 84 chr12 63197542 63198849 -58058681 + L1_Mur3 LINE L1 2991 4285 -1598 3 1067 1461 240 84 3 chr12 63198849 63199183 -58058347 - ORR1B2 LTR MaLR -3 364 4 3 1067 11827 259 29 84 chr12 63199183 63200716 -58056814 + L1_Mur3 LINE L1 4286 5805 -78 3 1067 4666 258 64 12 chr12 63200728 63201869 -58055661 + Lx6 LINE L1 6255 7454 -6 3 1067 29 60 0 0 chr12 63201963 63202013 -58055517 + AT_rich Low_complexity Low_complexity 1 50 0 3 1067 419 396 60 52 chr12 63203416 63203797 -58053733 + MLT1H1 LTR MaLR 6 389 -166 3 1067 477 0 0 0 chr12 63204085 63204138 -58053392 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1067 384 22 0 0 chr12 63204138 63204182 -58053348 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1067 3840 78 37 9 chr12 63204289 63204832 -58052698 + L1_Mus2 LINE L1 5976 6533 -33 3 1067 295 185 34 0 chr12 63205081 63205150 -58052380 + ORR1B1 LTR MaLR 336 394 0 3 1067 551 307 52 18 chr12 63205150 63205462 -58052068 + L1MA4A LINE L1 5615 5932 -371 3 1067 203 220 40 0 chr12 63206546 63206596 -58050934 + (CATA)n Simple_repeat Simple_repeat 2 53 0 3 1067 523 234 8 31 chr12 63207118 63207246 -58050284 + Lx6 LINE L1 6392 6516 -944 3 1067 2466 127 3 0 chr12 63207243 63207621 -58049909 - L1_Mus2 LINE L1 -641 5242 4864 3 1067 7134 88 24 4 chr12 63207622 63208898 -58048632 + L1_Mus2 LINE L1 5276 6565 -1 3 1067 2825 266 32 28 chr12 63208916 63209695 -58047835 + Lx6 LINE L1 6503 7284 -176 3 1067 305 340 20 0 chr12 63209787 63209887 -58047643 + Lx7 LINE L1 7197 7298 -398 3 1067 399 21 0 0 chr12 63209906 63209954 -58047576 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1067 36 23 0 0 chr12 63210043 63210086 -58047444 + AT_rich Low_complexity Low_complexity 1 43 0 3 1067 21 0 0 0 chr12 63210289 63210310 -58047220 + AT_rich Low_complexity Low_complexity 1 21 0 3 1067 847 109 102 0 chr12 63210507 63210635 -58046895 + B1_Mus1 SINE Alu 2 142 -6 3 1067 21 0 0 0 chr12 63211069 63211090 -58046440 + AT_rich Low_complexity Low_complexity 1 21 0 3 1067 492 275 25 8 chr12 63213269 63213390 -58044140 + B3A SINE B2 1 123 -75 3 1067 552 30 0 0 chr12 63213473 63213539 -58043991 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1067 443 214 57 19 chr12 63213539 63213644 -58043886 - ORR1D1 LTR MaLR -265 109 1 3 1067 4119 136 12 23 chr12 63213680 63214371 -58043159 + Lx2A1 LINE L1 6323 7005 -3 3 1067 27 29 0 0 chr12 63215397 63215431 -58042099 + AT_rich Low_complexity Low_complexity 1 34 0 3 1067 414 0 0 0 chr12 63215771 63215817 -58041713 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1067 21 0 0 0 chr12 63216033 63216054 -58041476 + AT_rich Low_complexity Low_complexity 1 21 0 3 1067 231 36 0 0 chr12 63216136 63216164 -58041366 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1067 405 0 0 0 chr12 63216164 63216208 -58041322 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1067 3811 224 13 31 chr12 63216343 63217216 -58040314 - Lx5 LINE L1 -82 6968 6112 3 1067 2765 161 48 25 chr12 63217273 63217832 -58039698 - L1_Mur2 LINE L1 -1236 4641 4070 3 1067 24 77 0 0 chr12 63217918 63217970 -58039560 + AT_rich Low_complexity Low_complexity 1 52 0 3 1067 287 355 120 6 chr12 63218282 63218449 -58039081 + MLT1D LTR MaLR 293 478 -27 3 1067 1974 218 18 7 chr12 63218500 63218953 -58038577 - L1_Mur3 LINE L1 -353 5771 5274 3 1067 198 0 0 0 chr12 63218962 63218984 -58038546 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 3 1067 24 32 0 0 chr12 63219046 63219077 -58038453 + AT_rich Low_complexity Low_complexity 1 31 0 3 1067 673 154 8 13 chr12 63219099 63219244 -58038286 + BGLII_B LTR ERVK 233 433 -8 3 1067 236 167 83 0 chr12 63219468 63219516 -58038014 + BGLII_B LTR ERVK 502 553 0 3 1067 3856 133 31 11 chr12 63219516 63220160 -58037370 + Lx2 LINE L1 6339 6995 -2 3 1067 5834 215 98 32 chr12 63220203 63221769 -58035761 - L1_Mur3 LINE L1 -2144 3736 2057 3 1067 318 50 0 0 chr12 63221769 63221809 -58035721 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1067 5834 215 98 32 chr12 63221809 63222178 -58035352 - L1_Mur3 LINE L1 -3824 2056 1676 3 1067 254 0 87 0 chr12 63222178 63222224 -58035306 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 1067 5834 215 98 32 chr12 63222224 63222309 -58035221 - L1_Mur3 LINE L1 -4205 1675 1582 3 1067 344 22 22 0 chr12 63222478 63222523 -58035007 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1067 21 0 0 0 chr12 63222723 63222744 -58034786 + AT_rich Low_complexity Low_complexity 1 21 0 3 1067 1007 320 61 15 chr12 63222773 63223166 -58034364 + MTD LTR MaLR 1 411 -8 3 1067 292 290 75 0 chr12 63223304 63223397 -58034133 - B3A SINE B2 -58 140 41 3 1067 307 392 56 0 chr12 63224475 63224600 -58032930 + B1F1 SINE Alu 2 133 -16 3 1067 4286 74 9 0 chr12 63224863 63225431 -58032099 + L1_Mus1 LINE L1 5994 6566 -1 3 1067 683 253 77 12 chr12 63225835 63226003 -58031527 - B3 SINE B2 -3 213 35 3 1067 181 350 125 0 chr12 63226860 63226940 -58030590 - L2 LINE L2 -657 2762 2673 3 1067 601 173 172 7 chr12 63227389 63227491 -58030039 - Lx2 LINE L1 -3 6994 6868 3 1067 189 0 0 0 chr12 63227491 63227512 -58030018 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 3 1067 601 173 172 7 chr12 63227512 63227560 -58029970 - Lx2 LINE L1 -130 6867 6820 3 1067 821 258 29 109 chr12 63228271 63228685 -58028845 + Lx9 LINE L1 7222 7602 -42 3 1067 361 289 162 109 chr12 63228876 63229160 -58028370 - MLT1B LTR MaLR -6 384 86 3 1067 1576 260 45 12 chr12 63229178 63229598 -58027932 - RMER10A LTR ERVL -8 434 1 3 1067 8042 20 1 0 chr12 63229821 63230757 -58026773 - L1Md_T LINE L1 -928 4955 4019 3 1067 5441 16 6 0 chr12 63230756 63231391 -58026139 + L1Md_T LINE L1 4948 5586 -297 3 1067 8238 41 1 0 chr12 63231392 63232386 -58025144 + L1Md_T LINE L1 5588 6582 0 3 1067 464 321 46 35 chr12 63232399 63232573 -58024957 - MLT1B-int LTR MaLR -202 1169 994 3 1067 228 346 0 49 chr12 63232584 63232666 -58024864 + ID2 SINE ID 6 83 0 3 1067 652 325 111 24 chr12 63232601 63232910 -58024620 + B4 SINE B4 11 286 -6 3 1067 245 109 22 0 chr12 63232910 63232956 -58024574 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1067 230 254 250 48 chr12 63232956 63232977 -58024553 + RSINE1 SINE B4 138 159 -6 3 1067 5388 100 30 1 chr12 63233205 63233993 -58023537 - L1_Mus4 LINE L1 -2 6634 5824 3 1067 14076 168 26 12 chr12 63235236 63236014 -58021516 + Lx LINE L1 3136 3939 -1944 3 1067 3502 62 0 2 chr12 63236014 63236463 -58021067 + L1Md_F2 LINE L1 6132 6579 -3 3 1067 14076 168 26 12 chr12 63236463 63237873 -58019657 + Lx LINE L1 3940 5353 -530 3 1067 6116 78 5 1 chr12 63237873 63238682 -58018848 + L1_Mus1 LINE L1 5756 6567 0 3 1067 14076 144 16 8 chr12 63238682 63239964 -58017566 + Lx LINE L1 5354 6654 0 3 1067 2935 122 17 10 chr12 63240003 63240483 -58017047 - L1_Mur1 LINE L1 -322 5564 5082 3 1067 329 165 81 12 chr12 63240698 63240784 -58016746 + Lx LINE L1 6528 6619 -35 3 1067 360 0 0 0 chr12 63240792 63240832 -58016698 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1067 22 0 0 0 chr12 63240841 63240863 -58016667 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 197 65 32 0 chr12 63240880 63240911 -58016619 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 3 1067 23 33 0 0 chr12 63240981 63241011 -58016519 + AT_rich Low_complexity Low_complexity 1 30 0 3 1067 938 251 52 77 chr12 63241939 63242305 -58015225 + RLTR14 LTR ERV1 26 382 0 3 1067 432 371 0 74 chr12 63242808 63242971 -58014559 + B3A SINE B2 1 151 -47 3 1067 22 0 0 0 chr12 63243067 63243089 -58014441 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 727 301 83 70 chr12 63243089 63243545 -58013985 + MT2A LTR ERVL 1 462 -71 3 1067 225 82 61 0 chr12 63243545 63243594 -58013936 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1067 727 301 83 70 chr12 63243594 63243619 -58013911 + MT2A LTR ERVL 463 487 -46 3 1067 477 118 15 0 chr12 63244006 63244074 -58013456 - Lx LINE L1 -431 6223 6155 3 1067 2646 116 29 5 chr12 63244075 63244484 -58013046 + Lx LINE L1 6230 6648 -6 3 1067 252 0 0 0 chr12 63244961 63244989 -58012541 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1067 449 346 55 0 chr12 63245063 63245265 -58012265 - MER2 DNA MER2_type -42 303 91 3 1067 2263 170 12 5 chr12 63245442 63245874 -58011656 + MusHAL1 LINE L1 1508 1942 -770 3 1067 38111 10 0 7 chr12 63245873 63251268 -58006262 + L1Md_A LINE L1 233 5586 -297 3 1067 8890 9 0 0 chr12 63251268 63252262 -58005268 + L1Md_A LINE L1 5587 6580 -2 3 1067 10487 184 40 133 chr12 63252274 63256619 -58000911 + Lx4B LINE L1 3124 7058 0 3 1067 21 0 0 0 chr12 63256619 63256640 -58000890 + AT_rich Low_complexity Low_complexity 1 21 0 3 1067 3215 224 3 3 chr12 63256854 63257495 -58000035 - RMER12B LTR ERVK -763 641 1 3 1067 520 307 8 11 chr12 63257580 63257822 -57999708 - L1M2 LINE L1 -599 5713 5471 3 1067 365 339 99 41 chr12 63257916 63258088 -57999442 + B3A SINE B2 5 186 -12 3 1067 500 365 60 0 chr12 63258197 63258397 -57999133 + ID_B1 SINE B4 12 223 -1 3 1067 21 36 0 0 chr12 63258905 63258933 -57998597 + AT_rich Low_complexity Low_complexity 1 28 0 3 1067 503 215 181 48 chr12 63259278 63259444 -57998086 - Lx9 LINE L1 -236 7408 7221 3 1067 291 113 0 0 chr12 63260597 63260650 -57996880 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1067 222 182 192 0 chr12 63261152 63261251 -57996279 + MIR SINE MIR 103 220 -42 3 1067 867 242 55 36 chr12 63261928 63262237 -57995293 + RMER17C LTR ERVK 64 378 -32 3 1067 886 223 29 16 chr12 63262295 63262537 -57994993 + RMER10A LTR ERVL 198 442 0 3 1067 459 0 0 0 chr12 63263850 63263901 -57993629 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1067 35061 76 3 6 chr12 63263901 63270068 -57987462 - L1Md_F3 LINE L1 -22 6562 412 3 1067 249 151 0 0 chr12 63270698 63270751 -57986779 + A-rich Low_complexity Low_complexity 1 53 0 3 1067 239 353 26 32 chr12 63271749 63271939 -57985591 - L1M3d LINE L1 -5043 848 660 3 1067 267 31 0 0 chr12 63272063 63272095 -57985435 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1067 586 287 130 96 chr12 63272389 63272797 -57984733 - RLTR23 LTR ERV1 0 430 9 3 1067 895 309 39 25 chr12 63273124 63273757 -57983773 - RLTR4_MM-int LTR ERV1 -2384 5394 4901 3 1067 411 106 0 0 chr12 63273757 63273823 -57983707 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 1067 360 346 78 28 chr12 63275987 63276344 -57981186 - Lx9 LINE L1 -181 7463 7089 4 1067 792 276 105 55 chr12 63276659 63276755 -57980775 + RMER17C LTR ERVK 1 108 -302 4 1067 510 17 0 0 chr12 63276755 63276814 -57980716 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1067 792 276 105 55 chr12 63276814 63277078 -57980452 + RMER17C LTR ERVK 109 378 -32 4 1067 675 145 128 0 chr12 63277082 63277108 -57980422 - Lx2 LINE L1 -89 6908 6868 4 1067 180 0 0 0 chr12 63277108 63277128 -57980402 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 4 1067 675 145 128 0 chr12 63277128 63277218 -57980312 - Lx2 LINE L1 -130 6867 6778 4 1067 555 101 13 0 chr12 63277220 63277299 -57980231 + Lx LINE L1 6342 6421 -233 4 1067 745 290 30 42 chr12 63277295 63277698 -57979832 - L1_Rod LINE L1 -2715 3132 2735 4 1067 36411 75 2 25 chr12 63277701 63284200 -57973330 + L1Md_T LINE L1 99 5586 -297 4 1067 7983 57 0 0 chr12 63284200 63285196 -57972334 + L1Md_T LINE L1 5587 6582 0 4 1067 478 204 122 26 chr12 63285211 63285367 -57972163 - L1_Rod LINE L1 -3101 2746 2576 4 1067 402 21 0 0 chr12 63285384 63285431 -57972099 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 1067 753 224 136 68 chr12 63285459 63285571 -57971959 + L1_Rod LINE L1 485 589 -6583 4 1067 6466 147 63 6 chr12 63285571 63286694 -57970836 + Lx3B LINE L1 5782 6968 -5 4 1067 753 224 136 68 chr12 63286694 63286950 -57970580 + L1_Rod LINE L1 590 878 -6294 4 1067 345 298 92 13 chr12 63286954 63287030 -57970500 - L1_Rod LINE L1 -6707 465 391 4 1067 540 280 326 0 chr12 63287030 63287312 -57970218 + ORR1D1 LTR MaLR 1 374 0 4 1067 345 298 92 13 chr12 63287312 63287388 -57970142 - L1_Rod LINE L1 -6782 390 301 4 1067 268 295 43 43 chr12 63287556 63287673 -57969857 - L1_Rod LINE L1 -6964 208 92 4 1067 317 303 83 36 chr12 63287802 63288304 -57969226 - L1M2 LINE L1 -574 5594 5066 4 1067 228 246 0 14 chr12 63288452 63288522 -57969008 - L1M5 LINE L1 -722 5451 5383 4 1067 297 0 0 0 chr12 63288529 63288562 -57968968 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1067 675 67 0 0 chr12 63288562 63288650 -57968880 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1067 213 256 0 0 chr12 63288852 63288895 -57968635 - PB1D10 SINE Alu -46 71 29 4 1067 438 378 40 51 chr12 63288988 63289261 -57968269 - B4A SINE B4 -17 275 6 4 1067 569 287 31 58 chr12 63289775 63290034 -57967496 + RMER5 LTR ERV1 33 284 -250 4 1067 567 244 157 40 chr12 63290079 63290327 -57967203 + RLTR10A LTR ERVK 135 411 0 4 1067 665 261 92 21 chr12 63290327 63290566 -57966964 + RMER5 LTR ERV1 279 534 0 4 1067 22 0 0 0 chr12 63290690 63290712 -57966818 + AT_rich Low_complexity Low_complexity 1 22 0 4 1067 21 57 0 0 chr12 63291022 63291057 -57966473 + AT_rich Low_complexity Low_complexity 1 35 0 4 1067 269 238 12 0 chr12 63291466 63291546 -57965984 + GA-rich Low_complexity Low_complexity 2 82 0 4 1067 234 105 0 0 chr12 63291555 63291593 -57965937 + (CAAGA)n Simple_repeat Simple_repeat 3 40 0 4 1067 23 0 0 0 chr12 63292863 63292886 -57964644 + AT_rich Low_complexity Low_complexity 1 23 0 4 1067 1225 40 0 0 chr12 63293235 63293383 -57964147 + B1_Mus1 SINE Alu 1 148 0 4 1067 249 33 0 0 chr12 63293604 63293634 -57963896 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1067 586 198 12 0 chr12 63294828 63294995 -57962535 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 1067 1848 219 104 6 chr12 63295435 63295917 -57961613 + RLTR24 LTR ERV1 1 529 0 4 1067 22 35 0 0 chr12 63296050 63296079 -57961451 + AT_rich Low_complexity Low_complexity 1 29 0 4 1067 831 275 51 48 chr12 63296081 63296455 -57961075 - Lx9 LINE L1 -2 7642 7268 4 1067 304 289 26 98 chr12 63297323 63297444 -57960086 + L1M2 LINE L1 4558 4661 -1482 4 1067 180 0 0 0 chr12 63297444 63297464 -57960066 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1067 304 289 26 98 chr12 63297464 63297576 -57959954 + L1M2 LINE L1 4662 4774 -1369 4 1067 369 328 8 16 chr12 63297756 63297883 -57959647 - RLTR42 LTR ERVK -113 126 1 4 1067 500 289 25 47 chr12 63297883 63298119 -57959411 + L1M2 LINE L1 4770 5000 -1143 4 1067 283 288 53 91 chr12 63299159 63299346 -57958184 - RMER10A LTR ERVL -27 415 236 4 1067 259 265 68 57 chr12 63299407 63299495 -57958035 - RMER10A LTR ERVL -336 106 18 4 1067 840 261 18 14 chr12 63299636 63299857 -57957673 - RLTR20A2 LTR ERVK -77 501 280 4 1067 1619 26 0 5 chr12 63299900 63300090 -57957440 + B2_Mm1a SINE B2 1 189 -4 4 1067 243 61 0 0 chr12 63300558 63300591 -57956939 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1067 949 290 94 34 chr12 63301122 63301504 -57956026 + MTD LTR MaLR 1 405 -14 4 1067 23 68 0 0 chr12 63302101 63302145 -57955385 + AT_rich Low_complexity Low_complexity 1 44 0 4 1067 628 215 0 17 chr12 63302992 63303167 -57954363 + CT-rich Low_complexity Low_complexity 1 172 0 4 1067 2268 261 39 26 chr12 63303284 63304026 -57953504 + Lx7 LINE L1 4918 5669 -211 4 1067 294 29 0 0 chr12 63304026 63304061 -57953469 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1067 544 278 8 0 chr12 63304075 63304201 -57953329 - B1_Mus1 SINE Alu -21 127 1 4 1067 324 279 0 112 chr12 63304099 63304224 -57953306 - MT2B LTR ERVL -344 257 147 4 1067 293 333 57 89 chr12 63304224 63304251 -57953279 - B4 SINE B4 -93 176 47 4 1067 552 266 22 6 chr12 63304251 63304429 -57953101 + Lx7 LINE L1 5719 5899 -1797 4 1067 2698 176 33 0 chr12 63304427 63304944 -57952586 - L1_Mur1 LINE L1 -113 5773 5240 4 1067 396 169 0 115 chr12 63305140 63305227 -57952303 - L1_Mur1 LINE L1 -662 5215 5139 4 1067 282 152 0 0 chr12 63305223 63305269 -57952261 + Lx7 LINE L1 5889 5934 -1762 4 1067 1752 69 13 4 chr12 63305425 63305658 -57951872 + L1_Mus1 LINE L1 6333 6567 0 4 1067 393 138 65 102 chr12 63305702 63305888 -57951642 + RMER17C LTR ERVK 97 275 -135 4 1067 3226 50 2 0 chr12 63305937 63306339 -57951191 - L1Md_F2 LINE L1 -316 5567 5165 4 1067 7560 62 6 12 chr12 63306345 63307333 -57950197 + L1Md_F2 LINE L1 5587 6568 -14 4 1068 601 318 96 33 chr12 63309379 63309714 -57947816 - RCHARR1 DNA MER1_type -508 466 111 4 1068 423 56 0 0 chr12 63310652 63310706 -57946824 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1068 290 322 41 7 chr12 63311049 63311196 -57946334 + L1M3 LINE L1 5401 5552 -616 4 1068 243 0 0 0 chr12 63311446 63311473 -57946057 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1068 342 0 0 0 chr12 63311836 63311874 -57945656 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1068 198 71 0 0 chr12 63311990 63312018 -57945512 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1068 22 0 0 0 chr12 63312132 63312154 -57945376 + AT_rich Low_complexity Low_complexity 1 22 0 4 1068 319 360 35 18 chr12 63312164 63312277 -57945253 + B1F1 SINE Alu 5 119 -30 4 1068 253 286 97 109 chr12 63312170 63312335 -57945195 + MT2B LTR ERVL 175 337 -264 4 1068 3915 118 3 2 chr12 63312817 63313393 -57944137 - Lx3_Mus LINE L1 -2 7007 6431 4 1068 415 294 114 24 chr12 63313393 63313560 -57943970 - RLTR41 LTR ERV1 -1 445 264 4 1068 260 218 244 0 chr12 63313614 63313692 -57943838 - RLTR41 LTR ERV1 -299 147 51 4 1068 970 122 45 0 chr12 63313908 63314064 -57943466 - Lx3_Mus LINE L1 -599 6410 6248 4 1068 2667 125 40 13 chr12 63314061 63314207 -57943323 + Lx3_Mus LINE L1 5762 5908 -1101 4 1068 423 0 0 0 chr12 63314207 63314254 -57943276 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 4 1068 964 101 11 38 chr12 63314254 63314439 -57943091 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1068 2667 125 40 13 chr12 63314439 63314558 -57942972 + Lx3_Mus LINE L1 5909 6040 -969 4 1068 495 48 0 0 chr12 63314558 63314620 -57942910 + (GGGA)n Simple_repeat Simple_repeat 1 62 0 4 1068 2667 125 40 13 chr12 63314620 63314821 -57942709 + Lx3_Mus LINE L1 6041 6241 -768 4 1068 29 0 0 0 chr12 63314943 63314972 -57942558 + AT_rich Low_complexity Low_complexity 1 29 0 4 1068 182 91 61 0 chr12 63315028 63315061 -57942469 - L3 LINE CR1 -2327 2162 2128 4 1068 23 0 0 0 chr12 63315495 63315518 -57942012 + AT_rich Low_complexity Low_complexity 1 23 0 4 1068 4546 249 68 15 chr12 63315640 63316931 -57940599 - Lx7 LINE L1 -541 7155 5799 4 1068 254 236 14 0 chr12 63316916 63316988 -57940542 - L1_Mur3 LINE L1 -3455 2425 2353 4 1068 1751 228 64 40 chr12 63316992 63317114 -57940416 - L1_Mur3 LINE L1 -3715 2165 2059 4 1068 468 48 0 0 chr12 63317114 63317177 -57940353 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1068 1751 228 64 40 chr12 63317177 63317722 -57939808 - L1_Mur3 LINE L1 -3822 2058 1482 4 1068 317 279 77 0 chr12 63317768 63317872 -57939658 - Lx9 LINE L1 -1675 5969 5858 4 1068 525 297 82 13 chr12 63317892 63318364 -57939166 - L1M2 LINE L1 -678 5622 5120 4 1068 321 26 0 0 chr12 63318413 63318451 -57939079 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 4 1068 201 74 0 0 chr12 63318952 63318979 -57938551 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1068 589 325 46 15 chr12 63320226 63320462 -57937068 - B4 SINE B4 -52 240 2 4 1068 351 261 162 0 chr12 63320503 63320645 -57936885 + RCHARR1 DNA MER1_type 265 429 -545 4 1068 297 340 196 36 chr12 63320702 63320886 -57936644 + B4A SINE B4 1 227 -65 4 1068 204 40 0 0 chr12 63320886 63320911 -57936619 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4 1068 297 340 196 36 chr12 63320911 63320976 -57936554 + B4A SINE B4 228 290 -2 4 1068 290 221 81 0 chr12 63321017 63321103 -57936427 + RCHARR1 DNA MER1_type 483 575 -399 4 1068 282 327 53 0 chr12 63321363 63321476 -57936054 + PB1D7 SINE Alu 1 119 -1 4 1068 463 314 0 8 chr12 63321483 63321605 -57935925 + RSINE1 SINE B4 3 123 -42 4 1068 229 228 70 0 chr12 63321645 63321702 -57935828 + (CATG)n Simple_repeat Simple_repeat 3 63 0 4 1068 259 322 61 34 chr12 63321735 63321940 -57935590 + L1M2 LINE L1 5542 5746 -566 4 1068 495 0 0 0 chr12 63321940 63321995 -57935535 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1068 369 0 0 0 chr12 63321995 63322035 -57935495 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1068 259 322 61 34 chr12 63322035 63322124 -57935406 + L1M2 LINE L1 5747 5843 -469 4 1068 1132 209 19 52 chr12 63322402 63322842 -57934688 + RMER20B LTR ERVK 1 530 -97 4 1068 297 0 0 0 chr12 63323116 63323149 -57934381 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1068 296 48 0 23 chr12 63323374 63323417 -57934113 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 4 1068 30 27 0 0 chr12 63324138 63324175 -57933355 + AT_rich Low_complexity Low_complexity 1 37 0 4 1068 312 70 0 0 chr12 63325463 63325506 -57932024 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1068 23 33 0 0 chr12 63325555 63325585 -57931945 + AT_rich Low_complexity Low_complexity 1 30 0 4 1068 246 336 42 14 chr12 63325973 63326115 -57931415 - L1MA9 LINE L1 -38 6274 6129 4 1068 472 216 8 75 chr12 63326682 63326802 -57930728 + MTD LTR MaLR 308 419 0 4 1068 2930 273 50 48 chr12 63326798 63327785 -57929745 + MTD-int LTR MaLR 1 1121 -137 4 1068 41187 3 0 0 chr12 63327806 63333288 -57924242 - L1Md_A LINE L1 0 6582 1100 4 1068 370 271 134 6 chr12 63333298 63333469 -57924061 + MTD-int LTR MaLR 1066 1258 0 4 1068 1407 284 31 46 chr12 63333475 63333706 -57923824 + MTD LTR MaLR 13 245 -174 4 1068 252 0 0 0 chr12 63333706 63333734 -57923796 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1068 1407 284 31 46 chr12 63333734 63333890 -57923640 + MTD LTR MaLR 246 401 -18 4 1068 2368 139 12 19 chr12 63333890 63334302 -57923228 + RLTR9E LTR ERVK 1 409 0 4 1068 1407 284 31 46 chr12 63334302 63334326 -57923204 + MTD LTR MaLR 402 419 0 4 1068 3640 69 42 20 chr12 63334481 63334982 -57922548 + RLTR1B LTR ERV1 1 512 0 5 1068 231 328 68 40 chr12 63335118 63335369 -57922161 + L1MA6 LINE L1 5911 6168 -132 5 1068 796 320 26 88 chr12 63336610 63336952 -57920578 - MTE2a LTR MaLR 0 379 59 5 1068 368 265 43 43 chr12 63337194 63337332 -57920198 + MER58A DNA MER1_type 52 189 -35 5 1068 7907 51 11 3 chr12 63337703 63339216 -57918314 - L1Md_F3 LINE L1 0 6584 5060 5 1068 561 55 0 0 chr12 63339259 63339332 -57918198 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1068 357 43 0 0 chr12 63339385 63339432 -57918098 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 5 1068 279 0 0 0 chr12 63339697 63339728 -57917802 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1068 225 315 71 71 chr12 63339763 63339860 -57917670 - B3 SINE B2 0 216 5 5 1068 431 322 9 0 chr12 63339860 63339975 -57917555 - RSINE1 SINE B4 -44 121 6 5 1068 2252 143 66 0 chr12 63340042 63340419 -57917111 + L1_Mus4 LINE L1 6208 6609 -27 5 1068 489 290 36 66 chr12 63340985 63341151 -57916379 + B3A SINE B2 22 182 -16 5 1068 23 0 0 0 chr12 63341217 63341240 -57916290 + AT_rich Low_complexity Low_complexity 1 23 0 5 1068 720 177 21 0 chr12 63342470 63342611 -57914919 - L1_Mm LINE L1 -1210 4673 4530 5 1068 1867 141 7 0 chr12 63342604 63342910 -57914620 + L1_Mus4 LINE L1 5780 6087 -549 5 1068 3912 87 4 7 chr12 63343141 63343927 -57913603 + L1_Mus4 LINE L1 6093 6636 0 5 1068 4564 162 6 13 chr12 63343927 63344708 -57912822 + L1_Mm LINE L1 5011 5786 -97 5 1068 27 49 0 0 chr12 63344867 63344908 -57912622 + AT_rich Low_complexity Low_complexity 1 41 0 5 1068 37192 44 3 4 chr12 63345004 63350476 -57907054 - L1Md_T LINE L1 0 6585 1122 5 1068 4489 51 0 0 chr12 63350480 63351033 -57906497 - L1Md_T LINE L1 0 6582 6030 5 1068 1952 34 0 0 chr12 63351033 63351269 -57906261 + L1Md_T LINE L1 5809 6044 -538 5 1068 4486 43 2 26 chr12 63351266 63351838 -57905692 - L1Md_T LINE L1 -5488 1034 477 5 1068 685 92 92 0 chr12 63352248 63352346 -57905184 + Lx2 LINE L1 6547 6653 -344 5 1068 1965 174 114 10 chr12 63352813 63353209 -57904321 - Lx2 LINE L1 0 6997 6561 5 1068 814 204 0 0 chr12 63353202 63353364 -57904166 + L1_Mur2 LINE L1 4230 4391 -1486 5 1068 3075 73 0 0 chr12 63354580 63355073 -57902457 - L1_Mus1 LINE L1 -627 5940 5448 5 1068 4239 81 48 12 chr12 63355073 63355182 -57902348 + L1_Mus1 LINE L1 5948 6056 -511 5 1068 3876 57 17 36 chr12 63355182 63355711 -57901819 + MURVY-LTR LTR ERV1 1 519 0 5 1068 4239 81 48 12 chr12 63355711 63356199 -57901331 + L1_Mus1 LINE L1 6057 6567 0 5 1068 312 348 9 0 chr12 63357441 63357553 -57899977 - PB1D7 SINE Alu -7 113 1 5 1068 306 0 0 0 chr12 63357762 63357796 -57899734 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1068 432 0 0 0 chr12 63357796 63357843 -57899687 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1068 767 229 30 30 chr12 63357970 63358173 -57899357 - Lx9 LINE L1 -358 7286 7084 5 1068 1001 243 96 17 chr12 63358182 63358475 -57899055 + Lx9 LINE L1 5653 5968 -1676 5 1068 216 0 0 0 chr12 63358759 63358783 -57898747 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1068 20445 21 0 0 chr12 63358854 63361249 -57896281 + L1Md_T LINE L1 3192 5586 -297 5 1068 8860 10 0 0 chr12 63361249 63362245 -57895285 + L1Md_T LINE L1 5587 6582 0 5 1068 369 0 0 0 chr12 63363916 63363957 -57893573 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1068 288 0 0 0 chr12 63363957 63363988 -57893542 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1068 238 344 57 0 chr12 63364026 63364148 -57893382 + L1M2 LINE L1 5468 5596 -695 5 1068 444 62 0 0 chr12 63364313 63364377 -57893153 + (A)n Simple_repeat Simple_repeat 1 64 0 5 1068 11557 151 106 62 chr12 63367122 63369144 -57888386 - Lx3C LINE L1 0 6976 4405 5 1068 189 0 0 0 chr12 63369144 63369165 -57888365 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1068 11557 155 176 109 chr12 63369165 63369363 -57888167 - Lx3C LINE L1 -1482 4404 4158 5 1068 1584 132 132 0 chr12 63369363 63369652 -57887878 - IAPEY3_LTR LTR ERVK -5 327 1 5 1068 11557 155 176 109 chr12 63369652 63372274 -57885256 - Lx3C LINE L1 -1482 4157 880 5 1068 1425 249 49 112 chr12 63373244 63373896 -57883634 - RMER19C LTR ERVK 0 611 1 5 1068 33 43 0 0 chr12 63374654 63374701 -57882829 + AT_rich Low_complexity Low_complexity 1 47 0 5 1068 1305 292 55 16 chr12 63374708 63375033 -57882497 - L1MA9 LINE L1 -46 6134 5752 5 1068 5030 119 50 7 chr12 63375033 63375851 -57881679 - Lx3_Mus LINE L1 -8 7001 6149 5 1068 11630 114 7 8 chr12 63375851 63376932 -57880598 - L1_Mur1 LINE L1 -163 5723 4647 5 1068 227 31 31 0 chr12 63376932 63376964 -57880566 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1068 11630 114 7 8 chr12 63376964 63377683 -57879847 - L1_Mur1 LINE L1 -1240 4646 3925 5 1068 8054 3 0 0 chr12 63377679 63378572 -57878958 - L1Md_A LINE L1 0 6582 5690 5 1068 7035 1 0 0 chr12 63378576 63379361 -57878169 + L1_Mm LINE L1 4429 5213 -670 5 1068 937 133 0 0 chr12 63379360 63379510 -57878020 - L1_Mur1 LINE L1 -1948 3938 3789 5 1068 14239 106 10 29 chr12 63379511 63379799 -57877731 - L1_Mur1 LINE L1 -2405 3481 3204 5 1068 2097 30 19 8 chr12 63379799 63380066 -57877464 - L1Md_F3 LINE L1 0 6584 6315 5 1068 14239 140 49 28 chr12 63380066 63382978 -57874552 - L1_Mur1 LINE L1 -2683 3203 209 5 1068 498 86 0 0 chr12 63383313 63383394 -57874136 + (CAGCT)n Simple_repeat Simple_repeat 4 84 0 5 1068 1715 169 3 0 chr12 63383655 63383945 -57873585 - Lx2A1 LINE L1 -9 6999 6709 5 1068 442 265 86 0 chr12 63383975 63384092 -57873438 + Lx5 LINE L1 6435 6561 -489 5 1068 21 57 0 0 chr12 63384490 63384525 -57873005 + AT_rich Low_complexity Low_complexity 1 35 0 5 1068 1087 72 0 7 chr12 63384801 63384940 -57872590 + B1_Mm SINE Alu 1 138 -9 5 1068 501 62 0 0 chr12 63385005 63385070 -57872460 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1068 704 303 14 14 chr12 63385078 63385292 -57872238 + B3 SINE B2 2 215 -1 5 1068 26 74 0 0 chr12 63385566 63385620 -57871910 + AT_rich Low_complexity Low_complexity 1 54 0 5 1068 226 222 0 69 chr12 63385993 63386051 -57871479 - ORR1D1 LTR MaLR -54 325 272 5 1068 247 289 77 106 chr12 63386128 63386298 -57871232 - ORR1D1 LTR MaLR -204 170 6 5 1068 238 400 8 34 chr12 63386845 63386964 -57870566 - PB1D10 SINE Alu 0 117 2 5 1068 232 330 66 0 chr12 63387132 63387223 -57870307 - B3A SINE B2 -24 174 78 5 1068 203 133 0 43 chr12 63388085 63388132 -57869398 + T-rich Low_complexity Low_complexity 1 45 0 5 1068 4604 120 19 21 chr12 63388177 63388926 -57868604 - Lx3A LINE L1 -6 6975 6229 5 1068 1408 246 24 27 chr12 63389343 63389719 -57867811 - Lx9 LINE L1 -295 7349 6975 5 1068 30 0 0 0 chr12 63390075 63390105 -57867425 + AT_rich Low_complexity Low_complexity 1 30 0 5 1068 261 360 102 8 chr12 63390299 63390554 -57866976 - L1M4 LINE L1 -5877 665 387 5 1068 24 53 0 0 chr12 63390560 63390598 -57866932 + AT_rich Low_complexity Low_complexity 1 38 0 5 1068 226 67 44 0 chr12 63390916 63390961 -57866569 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1068 1215 344 19 8 chr12 63391029 63391554 -57865976 - Lx9 LINE L1 -790 6854 6324 5 1068 21 57 0 0 chr12 63391563 63391598 -57865932 + AT_rich Low_complexity Low_complexity 1 35 0 5 1068 2368 340 92 42 chr12 63391649 63393094 -57864436 - MTE-int LTR MaLR -58 1522 5 5 1068 396 0 0 0 chr12 63393094 63393138 -57864392 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1068 961 97 7 0 chr12 63393798 63393942 -57863588 - B1_Mm SINE Alu -2 145 1 5 1068 428 253 225 67 chr12 63394462 63394640 -57862890 + B3 SINE B2 3 208 -8 5 1068 405 95 0 0 chr12 63394796 63394859 -57862671 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1068 21 36 0 0 chr12 63395513 63395541 -57861989 + AT_rich Low_complexity Low_complexity 1 28 0 5 1068 205 128 21 21 chr12 63396250 63396298 -57861232 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1068 185 65 0 31 chr12 63396328 63396360 -57861170 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 5 1068 237 125 0 48 chr12 63398396 63398438 -57859092 - RMER15 LTR ERVL -179 396 357 5 1068 648 0 0 0 chr12 63399679 63399751 -57857779 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1068 27 0 0 0 chr12 63401087 63401114 -57856416 + AT_rich Low_complexity Low_complexity 1 27 0 5 1068 727 144 7 7 chr12 63401269 63401409 -57856121 + CT-rich Low_complexity Low_complexity 1 140 0 5 1068 729 343 80 46 chr12 63401422 63401471 -57856059 - Lx8 LINE L1 -60 7413 7363 5 1068 995 59 0 7 chr12 63401471 63401607 -57855923 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 5 1068 729 343 80 46 chr12 63401607 63402082 -57855448 - Lx8 LINE L1 -111 7362 6872 5 1068 449 347 11 17 chr12 63402358 63402534 -57854996 + Lx6 LINE L1 7152 7326 -134 5 1068 724 212 0 0 chr12 63402555 63402715 -57854815 + L1_Mur2 LINE L1 5140 5299 -578 5 1068 37 0 0 0 chr12 63402859 63402896 -57854634 + AT_rich Low_complexity Low_complexity 1 37 0 5 1068 185 0 40 0 chr12 63403014 63403039 -57854491 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1068 1027 111 7 0 chr12 63403043 63403187 -57854343 - B1_Mus2 SINE Alu -2 145 1 5 1068 21 71 0 0 chr12 63403765 63403807 -57853723 + AT_rich Low_complexity Low_complexity 1 42 0 5 1068 3439 57 2 13 chr12 63404394 63404843 -57852687 + L1Md_F2 LINE L1 6127 6570 -12 5 1068 396 0 0 0 chr12 63404846 63404890 -57852640 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 1068 396 287 16 21 chr12 63405743 63405935 -57851595 + MYSERV6-int LTR ERVK 66 256 -6294 5 1068 1049 226 29 30 chr12 63406034 63406328 -57851202 + MYSERV6-int LTR ERVK 1188 1627 -1550 5 1068 1616 119 70 0 chr12 63406369 63406613 -57850917 + ORR1A2 LTR MaLR 1 261 -66 5 1068 441 268 35 9 chr12 63406839 63406974 -57850556 - MTC LTR MaLR -18 403 261 5 1068 2729 214 116 19 chr12 63406983 63407629 -57849901 - RMER6D LTR ERVK -11 709 1 5 1068 1032 300 7 18 chr12 63407629 63407907 -57849623 - MTC LTR MaLR -146 275 1 5 1068 35992 47 24 3 chr12 63409011 63414205 -57843325 + L1Md_T LINE L1 304 5586 -297 5 1068 8001 55 0 0 chr12 63414205 63415200 -57842330 + L1Md_T LINE L1 5587 6581 -1 5 1068 28 71 0 0 chr12 63415836 63415892 -57841638 + AT_rich Low_complexity Low_complexity 1 56 0 5 1068 24 32 0 0 chr12 63416018 63416049 -57841481 + AT_rich Low_complexity Low_complexity 1 31 0 5 1068 3407 93 10 4 chr12 63416105 63416592 -57840938 - L1_Mus3 LINE L1 -7 6631 6142 5 1068 425 185 0 24 chr12 63416821 63416904 -57840626 + ORR1C1-int LTR MaLR 1290 1370 0 5 1068 1319 241 26 64 chr12 63416906 63417297 -57840233 + ORR1C1 LTR MaLR 3 378 0 5 1068 472 252 138 27 chr12 63417473 63417697 -57839833 - Lx7 LINE L1 -1490 6206 5958 5 1068 2528 190 102 90 chr12 63417738 63418188 -57839342 - Lx4B LINE L1 0 7058 6601 5 1068 3530 166 30 0 chr12 63418188 63418814 -57838716 + Lx2 LINE L1 6353 6997 0 5 1068 2528 190 102 90 chr12 63418814 63419029 -57838501 - Lx4B LINE L1 -458 6600 6385 5 1068 4594 200 63 14 chr12 63419699 63420046 -57837484 - L1_Mur2 LINE L1 -3468 2409 2065 6 1068 378 61 0 0 chr12 63420046 63420095 -57837435 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1068 4594 210 49 17 chr12 63420095 63421052 -57836478 - L1_Mur2 LINE L1 -3813 2064 1046 6 1068 2155 125 63 13 chr12 63421061 63421443 -57836087 - RLTR9E LTR ERVK 0 409 9 6 1068 727 243 11 27 chr12 63421876 63422062 -57835468 - Lx6 LINE L1 -1495 5965 5783 6 1068 477 0 0 0 chr12 63422062 63422115 -57835415 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 6 1068 28221 70 33 7 chr12 63422138 63426785 -57830745 - L1Md_F2 LINE L1 -3 6579 1800 6 1068 4274 148 10 22 chr12 63426792 63427873 -57829657 - L1Md_F2 LINE L1 -4388 1495 217 6 1068 1677 238 5 18 chr12 63427874 63428272 -57829258 - Lx6 LINE L1 -88 5792 5400 6 1068 21 36 0 0 chr12 63428411 63428439 -57829091 + AT_rich Low_complexity Low_complexity 1 28 0 6 1068 1378 276 30 70 chr12 63428486 63428946 -57828584 - RMER10A LTR ERVL 0 442 1 6 1068 953 211 79 4 chr12 63429406 63429634 -57827896 + L1_Mur3 LINE L1 5436 5680 -200 6 1068 526 285 7 0 chr12 63429634 63429771 -57827759 + B1_Mus1 SINE Alu 1 138 -10 6 1068 324 0 0 0 chr12 63429771 63429807 -57827723 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1068 3661 263 79 56 chr12 63429807 63431361 -57826169 + Lx7 LINE L1 5649 7259 -437 6 1068 531 90 0 0 chr12 63431361 63431439 -57826091 + (TCC)n Simple_repeat Simple_repeat 3 80 0 6 1068 8109 132 42 28 chr12 63431445 63432819 -57824711 - Lx3A LINE L1 0 6981 5588 6 1068 5361 114 23 39 chr12 63432859 63433761 -57823769 + L1_Mur1 LINE L1 4729 5616 -270 6 1068 968 243 27 86 chr12 63433746 63434223 -57823307 + Lx7 LINE L1 7248 7696 0 6 1068 381 58 0 0 chr12 63434251 63434303 -57823227 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 6 1068 26 30 0 0 chr12 63434698 63434731 -57822799 + AT_rich Low_complexity Low_complexity 1 33 0 6 133 24602 154 32 40 chr12 63434742 63439004 -57818526 + L1_Mus4 LINE L1 922 5251 -631 6 1069 309 248 8 135 chr12 63438983 63439109 -57818421 + MT2B LTR ERVL 155 264 -337 6 1069 911 69 15 0 chr12 63439004 63439134 -57818396 + B1_Mus1 SINE Alu 7 138 -10 6 1069 300 38 36 36 chr12 63439135 63439190 -57818340 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 1069 24602 116 10 12 chr12 63439190 63440415 -57817115 + L1_Mus4 LINE L1 5253 6488 -148 6 1069 477 0 0 0 chr12 63440458 63440511 -57817019 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1069 5351 42 0 2 chr12 63440511 63441156 -57816374 - L1Md_F2 LINE L1 -18 6564 5921 6 1069 270 56 0 0 chr12 63441182 63441218 -57816312 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1069 209 33 33 0 chr12 63441638 63441668 -57815862 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1069 184 351 13 13 chr12 63441894 63441972 -57815558 + L4 LINE RTE 530 607 -1422 6 1069 275 238 16 60 chr12 63442927 63443110 -57814420 + A-rich Low_complexity Low_complexity 4 178 0 6 1069 23 54 0 0 chr12 63443500 63443537 -57813993 + AT_rich Low_complexity Low_complexity 1 37 0 6 1069 1888 139 13 19 chr12 63443730 63444038 -57813492 + Lx3B LINE L1 6665 6970 -3 6 1069 1174 297 88 25 chr12 63444239 63445122 -57812408 - L1MA6 LINE L1 -17 6283 5345 6 1069 531 0 0 0 chr12 63445255 63445314 -57812216 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1069 292 290 90 70 chr12 63445524 63445624 -57811906 - PB1D10 SINE Alu -9 108 7 6 1069 23 33 0 0 chr12 63445773 63445803 -57811727 + AT_rich Low_complexity Low_complexity 1 30 0 6 1069 7515 66 9 10 chr12 63445803 63447056 -57810474 - L1Md_F2 LINE L1 -15 6567 5321 6 1069 2356 80 3 0 chr12 63447054 63447381 -57810149 + L1Md_F2 LINE L1 4996 5323 -560 6 1069 317 345 37 45 chr12 63447422 63447668 -57809862 - L1MEf LINE L1 -4588 1612 1369 6 1069 627 297 103 62 chr12 63448454 63448640 -57808890 + B4 SINE B4 5 215 -77 6 1069 327 85 0 0 chr12 63448640 63448687 -57808843 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1069 627 297 103 62 chr12 63448687 63448773 -57808757 + B4 SINE B4 216 288 -4 6 1069 983 276 88 7 chr12 63449947 63450453 -57807077 + Lx7 LINE L1 5382 5930 -1766 6 1069 248 258 20 70 chr12 63450857 63450957 -57806573 - RMER12 LTR ERVK -479 843 749 6 1069 21 57 0 0 chr12 63451070 63451105 -57806425 + AT_rich Low_complexity Low_complexity 1 35 0 6 1069 1752 52 0 0 chr12 63451876 63452088 -57805442 + L1Md_F3 LINE L1 5375 5586 -297 6 1069 8030 40 8 1 chr12 63452088 63453065 -57804465 + L1Md_F3 LINE L1 5587 6570 -14 6 1069 21 0 0 0 chr12 63453127 63453148 -57804382 + AT_rich Low_complexity Low_complexity 1 21 0 6 1069 516 278 0 17 chr12 63453203 63453320 -57804210 + B1_Mur4 SINE Alu 29 143 -7 6 1069 41 0 0 0 chr12 63453332 63453373 -57804157 + AT_rich Low_complexity Low_complexity 1 41 0 6 1069 5534 35 25 0 chr12 63453483 63454161 -57803369 + L1Md_F3 LINE L1 5889 6583 -1 6 1069 5124 131 58 27 chr12 63454229 63455152 -57802378 + Lx3_Mus LINE L1 6019 6970 -39 6 1069 555 16 0 0 chr12 63455161 63455225 -57802305 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6 1069 194 105 26 0 chr12 63455423 63455461 -57802069 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1069 441 171 13 0 chr12 63455785 63455861 -57801669 + MT2A LTR ERVL 1 77 -456 6 1069 227 148 17 69 chr12 63455852 63455882 -57801648 - ORR1C2 LTR MaLR -32 352 324 6 1069 734 112 13 47 chr12 63455882 63456032 -57801498 + L1_Mus3 LINE L1 6492 6636 -2 6 1069 227 148 17 69 chr12 63456032 63456059 -57801471 - ORR1C2 LTR MaLR -61 323 298 6 1069 198 0 0 0 chr12 63456059 63456081 -57801449 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1069 2487 97 3 3 chr12 63456103 63456466 -57801064 + Lx LINE L1 5587 5949 -705 6 1069 528 145 171 9 chr12 63456463 63456574 -57800956 - L1_Mm LINE L1 -306 5577 5449 6 1069 986 114 0 0 chr12 63456572 63456712 -57800818 + Lx LINE L1 5996 6135 -519 6 1069 1693 154 0 0 chr12 63456716 63457001 -57800529 - Lx5 LINE L1 -1102 5948 5664 6 1069 3822 202 40 5 chr12 63457019 63457801 -57799729 + Lx4B LINE L1 5821 6629 -429 6 1069 2204 149 52 12 chr12 63457797 63458219 -57799311 + L1_Mur2 LINE L1 4987 5425 -452 6 1069 255 327 43 17 chr12 63458275 63458390 -57799140 - MLT1A LTR MaLR -2 372 255 6 1069 342 276 51 38 chr12 63458614 63458772 -57798758 - L1MC2 LINE L1 -421 5923 5764 6 1069 21 36 0 0 chr12 63459188 63459216 -57798314 + AT_rich Low_complexity Low_complexity 1 28 0 6 1069 225 0 0 0 chr12 63459301 63459326 -57798204 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 1069 1094 68 7 0 chr12 63460621 63460767 -57796763 - B1_Mm SINE Alu 0 147 1 6 1069 23 0 0 0 chr12 63461897 63461920 -57795610 + AT_rich Low_complexity Low_complexity 1 23 0 6 1069 554 228 16 67 chr12 63461962 63462096 -57795434 - MT2A LTR ERVL -401 132 6 6 1069 537 372 56 24 chr12 63462686 63463151 -57794379 - Lx9 LINE L1 -297 7347 6868 6 1069 3714 139 8 10 chr12 63463162 63463785 -57793745 - Lx2 LINE L1 -1 6996 6375 6 1069 5145 129 23 6 chr12 63463803 63464621 -57792909 - Lx3A LINE L1 -11 6970 6139 6 1069 770 237 68 8 chr12 63464631 63464925 -57792605 + Lx9 LINE L1 5618 5959 -1685 6 1069 21 71 0 0 chr12 63465068 63465110 -57792420 + AT_rich Low_complexity Low_complexity 1 42 0 6 1069 1449 314 24 10 chr12 63465142 63465635 -57791895 + Lx9 LINE L1 6374 6873 -771 6 1069 21 0 0 0 chr12 63465690 63465711 -57791819 + AT_rich Low_complexity Low_complexity 1 21 0 6 1069 1145 67 11 27 chr12 63467397 63467580 -57789950 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 6 1069 401 0 20 0 chr12 63467606 63467655 -57789875 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 6 1069 923 148 0 7 chr12 63467655 63467798 -57789732 - B1_Mus1 SINE Alu -5 143 2 6 1069 662 0 13 0 chr12 63467881 63467959 -57789571 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 6 1069 239 266 31 0 chr12 63467980 63468044 -57789486 - L1MC3 LINE L1 -959 6826 6761 6 1069 384 373 28 0 chr12 63468180 63468322 -57789208 + B1_Mur2 SINE Alu 3 148 -1 6 1069 285 29 0 0 chr12 63468363 63468397 -57789133 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1069 1008 109 0 0 chr12 63468397 63468534 -57788996 - B1_Mus2 SINE Alu -10 137 1 6 1069 4665 88 17 1 chr12 63468544 63469195 -57788335 - L1_Mus1 LINE L1 -1 6566 5906 6 1069 21 0 0 0 chr12 63469303 63469324 -57788206 + AT_rich Low_complexity Low_complexity 1 21 0 6 1069 3279 87 13 2 chr12 63470733 63471185 -57786345 + L1Md_F2 LINE L1 6063 6519 -63 6 1069 474 366 90 11 chr12 63471346 63471702 -57785828 + MLT1A1 LTR MaLR 21 404 -4 6 1069 22574 83 2 2 chr12 63472517 63476334 -57781196 - L1Md_F2 LINE L1 -13 6569 2751 6 1069 3431 35 136 0 chr12 63477212 63477646 -57779884 - MT2_Mm LTR ERVL 0 493 1 6 1069 417 234 98 103 chr12 63478405 63478559 -57778971 - L1_Mur3 LINE L1 -897 4983 4842 6 1069 450 0 0 0 chr12 63478559 63478609 -57778921 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 1069 417 234 98 103 chr12 63478609 63478678 -57778852 - L1_Mur3 LINE L1 -1039 4841 4761 6 1069 1326 208 196 6 chr12 63478685 63479078 -57778452 - Lx7 LINE L1 -1759 5937 5470 6 1069 3224 53 2 2 chr12 63479099 63479495 -57778035 - MTA_Mm LTR MaLR 0 396 1 6 1069 536 236 8 16 chr12 63479496 63479621 -57777909 + Lx7 LINE L1 6226 6349 -1347 6 1069 2494 154 104 25 chr12 63483373 63483904 -57773626 - Lx7 LINE L1 -1040 4837 4265 6 1069 5689 211 43 14 chr12 63483903 63486000 -57771530 + Lx4B LINE L1 4844 7020 -38 6 1069 473 296 145 0 chr12 63486253 63486425 -57771105 - B3 SINE B2 0 216 20 6 1069 24 77 0 0 chr12 63486462 63486514 -57771016 + AT_rich Low_complexity Low_complexity 1 52 0 6 1069 1452 175 25 0 chr12 63486627 63486907 -57770623 + Lx2 LINE L1 5969 6255 -742 6 1069 1806 106 4 0 chr12 63486937 63487202 -57770328 + Lx LINE L1 5809 6074 -580 6 1069 794 354 25 48 chr12 63487200 63487678 -57769852 - Lx8 LINE L1 -433 7040 6574 6 1069 306 73 0 0 chr12 63487687 63487728 -57769802 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 6 1069 257 395 42 0 chr12 63487737 63487904 -57769626 - Lx9 LINE L1 -950 6694 6521 6 1069 765 169 26 63 chr12 63488045 63488096 -57769434 - L1_Mur2 LINE L1 -521 5362 5300 6 1069 1906 116 58 3 chr12 63488096 63488389 -57769141 - RLTR27 LTR ERVK 0 309 1 6 1069 765 150 16 70 chr12 63488389 63488545 -57768985 - L1_Mur2 LINE L1 -578 5299 5152 6 1069 3473 140 11 4 chr12 63488545 63489104 -57768426 + Lx LINE L1 6086 6648 -6 6 1069 340 330 100 11 chr12 63489116 63489306 -57768224 + Lx8 LINE L1 7026 7232 -241 7 1069 339 342 131 14 chr12 63490462 63490684 -57766846 - HAL1-3A_ME LINE L1 -327 2531 2284 7 1069 264 30 0 0 chr12 63490684 63490717 -57766813 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 7 1069 315 0 0 0 chr12 63491063 63491098 -57766432 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 1069 4686 141 77 21 chr12 63491108 63492164 -57765366 - Lx3C LINE L1 -10 6966 5804 7 1069 829 207 196 62 chr12 63492166 63492475 -57765055 - ORR1B1 LTR MaLR -15 314 1 7 1069 519 326 73 44 chr12 63492475 63492675 -57764855 + B4 SINE B4 73 278 -14 7 1069 991 167 59 23 chr12 63492742 63492963 -57764567 + Lx3C LINE L1 6748 6976 0 7 1069 259 242 0 57 chr12 63492966 63493036 -57764494 - B4 SINE B4 -212 80 15 7 1069 266 298 77 0 chr12 63493085 63493189 -57764341 - L1MB1 LINE L1 -44 6145 6034 7 1069 485 16 16 0 chr12 63493489 63493551 -57763979 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1069 1109 92 0 0 chr12 63493628 63493770 -57763760 + B1_Mus2 SINE Alu 1 142 -5 7 1069 201 162 0 0 chr12 63493772 63493809 -57763721 + A-rich Low_complexity Low_complexity 1 37 0 7 1069 9230 110 15 31 chr12 63494903 63496722 -57760808 - Lx3_Mus LINE L1 0 7009 5266 7 1069 471 18 0 0 chr12 63496722 63496778 -57760752 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1069 9230 88 31 46 chr12 63496778 63497577 -57759953 - Lx3_Mus LINE L1 -621 5265 4441 7 1069 25 31 0 0 chr12 63498325 63498357 -57759173 + AT_rich Low_complexity Low_complexity 1 32 0 7 1069 2429 127 8 5 chr12 63498655 63498733 -57758797 + Lx LINE L1 6011 6088 -566 7 1069 2902 145 124 163 chr12 63498733 63499291 -57758239 + RMER17A2 LTR ERVK 5 445 -461 7 1069 342 0 0 0 chr12 63499291 63499329 -57758201 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1069 2902 145 124 163 chr12 63499329 63499708 -57757822 + RMER17A2 LTR ERVK 446 904 -2 7 1069 2429 127 8 5 chr12 63499708 63500000 -57757530 + Lx LINE L1 6089 6382 -272 7 1069 1580 113 31 11 chr12 63500000 63500260 -57757270 + Lx LINE L1 6383 6647 -7 1 1069 850 208 0 58 chr12 63500266 63500455 -57757075 - Lx9 LINE L1 -227 7417 7240 2 1069 305 216 14 0 chr12 63500450 63500524 -57757006 + Lx9 LINE L1 7405 7479 -165 2 1069 342 213 75 0 chr12 63500543 63500637 -57756893 + Lx9 LINE L1 7536 7636 -8 2 1069 668 317 10 30 chr12 63500644 63500943 -57756587 + L1M2 LINE L1 5426 5718 -582 3 1069 415 398 8 85 chr12 63501046 63501304 -57756226 - B4A SINE B4 -7 285 48 4 1069 473 305 85 13 chr12 63501318 63501539 -57755991 - Lx6 LINE L1 -319 7141 6948 5 1069 783 322 7 20 chr12 63501580 63501872 -57755658 + Lx6 LINE L1 7147 7434 -26 6 1069 30 27 0 0 chr12 63501938 63501975 -57755555 + AT_rich Low_complexity Low_complexity 1 37 0 7 1069 452 214 150 0 chr12 63501976 63502163 -57755367 - Lx9 LINE L1 -1 7643 7429 8 1069 256 291 98 37 chr12 63502238 63502402 -57755128 + RMER4B LTR ERVK 19 192 -393 9 1069 278 215 152 37 chr12 63503261 63503425 -57754105 + RMER17C LTR ERVK 91 273 -137 1 1069 324 0 0 0 chr12 63503425 63503461 -57754069 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1069 297 0 0 0 chr12 63503601 63503634 -57753896 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1069 1541 77 0 9 chr12 63505094 63505305 -57752225 - L1_Mus1 LINE L1 0 6567 6359 1 1069 306 329 25 99 chr12 63505526 63505688 -57751842 + RMER4A LTR ERVK 10 159 -307 1 1069 509 310 83 55 chr12 63506545 63506882 -57750648 - L1_Rod LINE L1 0 5847 5527 1 1069 3682 203 9 12 chr12 63507078 63507836 -57749694 + RMER6A LTR ERVK 1 756 0 1 1069 288 329 104 68 chr12 63507953 63508116 -57749414 + ORR1D2 LTR MaLR 13 181 -189 1 1069 233 102 0 109 chr12 63508644 63508699 -57748831 + T-rich Low_complexity Low_complexity 6 54 0 1 1069 330 284 17 8 chr12 63508859 63508976 -57748554 + Tigger1 DNA MER2_type 2221 2338 -80 1 1069 571 307 32 18 chr12 63510128 63510347 -57747183 - RMER15 LTR ERVL -16 559 338 2 1069 447 325 8 8 chr12 63510444 63510565 -57746965 - B3A SINE B2 -77 121 1 2 1069 21 0 0 0 chr12 63511281 63511302 -57746228 + AT_rich Low_complexity Low_complexity 1 21 0 2 1069 1339 242 92 8 chr12 63511416 63511786 -57745744 + MTD LTR MaLR 5 405 -14 2 1069 889 349 71 23 chr12 63512296 63512898 -57744632 - Lx8 LINE L1 -306 7167 6537 2 1069 234 344 48 8 chr12 63513424 63513550 -57743980 - L1M2 LINE L1 -4385 2464 2334 2 1069 671 258 149 0 chr12 63513555 63513749 -57743781 - ORR1D2 LTR MaLR -4 366 144 2 1069 3329 168 15 0 chr12 63513754 63514343 -57743187 - Lx LINE L1 -6 6648 6051 2 1069 4454 144 56 22 chr12 63514338 63515157 -57742373 + Lx LINE L1 5804 6650 -4 2 1069 27 62 0 0 chr12 63515303 63515351 -57742179 + AT_rich Low_complexity Low_complexity 1 48 0 2 1069 462 18 0 0 chr12 63516425 63516480 -57741050 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1069 23 33 0 0 chr12 63517219 63517249 -57740281 + AT_rich Low_complexity Low_complexity 1 30 0 3 1069 583 333 6 0 chr12 63517252 63517408 -57740122 + RSINE1 SINE B4 7 163 -2 3 1069 21 57 0 0 chr12 63517764 63517799 -57739731 + AT_rich Low_complexity Low_complexity 1 35 0 3 1069 26 0 0 0 chr12 63518638 63518664 -57738866 + AT_rich Low_complexity Low_complexity 1 26 0 3 1069 1777 172 63 28 chr12 63519147 63519542 -57737988 + RLTR9E LTR ERVK 1 409 0 3 1069 198 0 0 0 chr12 63519908 63519930 -57737600 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1069 820 279 10 15 chr12 63520358 63520562 -57736968 - B3 SINE B2 -6 210 8 3 1069 207 0 0 0 chr12 63521169 63521192 -57736338 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1069 222 283 17 0 chr12 63521465 63521525 -57736005 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1069 214 373 8 71 chr12 63521530 63521657 -57735873 - RSINE1 SINE B4 -3 162 44 4 1069 288 0 0 0 chr12 63521676 63521708 -57735822 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1069 974 105 0 0 chr12 63521711 63521844 -57735686 - B1_Mus1 SINE Alu -15 133 1 4 1069 972 282 156 9 chr12 63523559 63523892 -57733638 - ORR1C2 LTR MaLR 0 384 3 4 1069 235 172 75 11 chr12 63523893 63523987 -57733543 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 4 1069 35 41 0 0 chr12 63524021 63524070 -57733460 + AT_rich Low_complexity Low_complexity 1 49 0 4 1069 964 241 187 0 chr12 63525368 63525684 -57731846 - Lx9 LINE L1 -626 7018 6644 4 1069 3741 32 5 0 chr12 63525692 63526126 -57731404 + RLTR10C LTR ERVK 1 436 0 4 1069 1399 93 36 3 chr12 63526126 63526428 -57731102 + MMERVK10C-int LTR ERVK 1 399 -7182 4 1069 15429 45 0 2 chr12 63526426 63528278 -57729252 + MMERVK10C-int LTR ERVK 870 2718 -4863 4 1069 441 0 0 0 chr12 63528278 63528327 -57729203 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1069 635 228 106 31 chr12 63528332 63528586 -57728944 - Lx9 LINE L1 -1592 6052 5780 4 1069 2079 124 12 3 chr12 63528613 63528936 -57728594 - Lx LINE L1 -9 6645 6320 4 1069 1204 135 0 5 chr12 63530467 63530653 -57726877 + B2_Mm2 SINE B2 1 185 -10 5 1069 37 86 0 0 chr12 63530689 63530782 -57726748 + AT_rich Low_complexity Low_complexity 1 93 0 5 1069 429 286 76 0 chr12 63530798 63530917 -57726613 - B1_Mus1 SINE Alu -20 128 1 5 1069 10484 100 5 2 chr12 63531063 63533286 -57724244 + L1_Mus1 LINE L1 4335 6565 -2 5 1069 330 26 0 0 chr12 63533882 63533921 -57723609 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1069 2516 49 58 3 chr12 63534089 63534415 -57723115 - ORR1A1 LTR MaLR -2 344 1 5 1069 29 28 0 0 chr12 63534614 63534650 -57722880 + AT_rich Low_complexity Low_complexity 1 36 0 5 1069 231 336 32 32 chr12 63534780 63534906 -57722624 + L2 LINE L2 2001 2126 -1293 5 1069 789 177 128 103 chr12 63535207 63535402 -57722128 + ORR1A4 LTR MaLR 1 200 -129 5 1069 586 203 54 76 chr12 63536246 63536470 -57721060 - L1_Rod LINE L1 -2326 3521 3303 5 1069 678 264 43 60 chr12 63536541 63536892 -57720638 - L1_Rod LINE L1 -2565 3282 2938 5 1069 209 206 14 29 chr12 63536913 63536983 -57720547 + (TAAA)n Simple_repeat Simple_repeat 1 69 0 6 1069 223 28 56 0 chr12 63538383 63538419 -57719111 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1069 1928 76 36 0 chr12 63539278 63539553 -57717977 - L1_Mus3 LINE L1 0 6638 6354 6 1069 510 172 33 0 chr12 63540230 63540352 -57717178 + CT-rich Low_complexity Low_complexity 3 128 0 6 1069 695 311 98 88 chr12 63541579 63542035 -57715495 + MT2B LTR ERVL 2 587 -14 6 1069 540 195 26 0 chr12 63542051 63542164 -57715366 - Lx9 LINE L1 -675 6969 6854 6 1069 902 288 66 34 chr12 63542165 63542514 -57715016 + Lx9 LINE L1 7080 7439 -205 6 1069 296 164 15 0 chr12 63542539 63542606 -57714924 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1069 509 142 17 17 chr12 63542727 63542842 -57714688 + CT-rich Low_complexity Low_complexity 6 120 0 6 1069 315 0 0 0 chr12 63542853 63542888 -57714642 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1069 899 140 0 7 chr12 63542952 63543096 -57714434 + B1_Mus1 SINE Alu 1 143 -5 7 1069 3894 143 10 19 chr12 63543676 63544881 -57712649 - L1VL4 LINE L1 -2087 1472 283 7 1069 1065 274 17 15 chr12 63544881 63545165 -57712365 - RLTR11A LTR ERVK -231 297 1 7 1069 351 242 0 10 chr12 63545346 63545446 -57712084 - Lx9 LINE L1 -35 7609 7511 7 1069 296 221 34 34 chr12 63545441 63545530 -57712000 + Lx9 LINE L1 6758 6846 -798 7 1069 3131 133 55 2 chr12 63546073 63546632 -57710898 - MusHAL1 LINE L1 -1867 845 257 7 1069 2839 200 49 29 chr12 63546632 63547259 -57710271 - RLTR26 LTR ERVK 0 642 3 7 1069 1253 154 4 0 chr12 63547259 63547505 -57710025 - MusHAL1 LINE L1 -2456 256 10 7 1069 5238 167 46 6 chr12 63547502 63548083 -57709447 + Lx2 LINE L1 5292 5875 -1122 7 1069 360 0 0 0 chr12 63548083 63548123 -57709407 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1069 5238 159 79 11 chr12 63548123 63548831 -57708699 + Lx2 LINE L1 5876 6651 -346 7 1069 25 0 0 0 chr12 63551541 63551566 -57705964 + AT_rich Low_complexity Low_complexity 1 25 0 7 1069 202 204 9 36 chr12 63552346 63552458 -57705072 + (TA)n Simple_repeat Simple_repeat 2 110 0 8 1069 438 331 66 21 chr12 63552489 63552958 -57704572 - L1MC1 LINE L1 -305 6028 5539 8 1069 288 364 53 73 chr12 63553182 63553428 -57704102 + MTEa LTR MaLR 1 241 -138 8 1069 517 82 0 0 chr12 63553571 63553644 -57703886 - L1_Mus2 LINE L1 -1 6565 6493 8 1069 571 350 150 35 chr12 63554263 63554760 -57702770 + ORR1E-int LTR MaLR 835 1533 -47 8 1069 442 356 79 58 chr12 63554757 63555085 -57702445 + ORR1E LTR MaLR 15 349 -10 8 1069 662 204 63 7 chr12 63555251 63555394 -57702136 + Lx9 LINE L1 5545 5695 -152 8 1069 8403 182 12 12 chr12 63555387 63556488 -57701042 + Lx2 LINE L1 4766 5875 -1122 8 1069 207 0 0 0 chr12 63556488 63556511 -57701019 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 8 1069 351 0 0 0 chr12 63556511 63556549 -57700981 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1069 8403 144 34 1 chr12 63556549 63557640 -57699890 + Lx2 LINE L1 5876 6996 -1 8 1069 352 269 62 33 chr12 63557653 63557943 -57699587 + Lx9 LINE L1 5747 6048 -1596 8 1069 1625 264 114 36 chr12 63558072 63558742 -57698788 + Lx9 LINE L1 6239 7110 -534 8 1069 417 39 0 0 chr12 63559310 63559361 -57698169 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1069 22 56 0 0 chr12 63559496 63559532 -57697998 + AT_rich Low_complexity Low_complexity 1 36 0 9 1069 476 96 414 0 chr12 63559644 63559748 -57697782 + B1_Mm SINE Alu 1 147 0 9 1069 250 59 42 56 chr12 63559752 63559824 -57697706 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 9 1069 795 289 75 17 chr12 63560016 63560378 -57697152 + MER95 LTR ERV 13 395 -36 9 1069 1921 157 0 15 chr12 63561177 63561506 -57696024 + Lx2 LINE L1 6673 6996 -1 9 1069 25 75 0 0 chr12 63561881 63561934 -57695596 + AT_rich Low_complexity Low_complexity 1 53 0 9 1069 409 387 27 5 chr12 63562260 63562483 -57695047 - MLT1F1 LTR MaLR 0 569 342 9 1069 2935 148 5 88 chr12 63565265 63565421 -57692109 - L1_Mm LINE L1 -862 5021 4866 9 1069 576 0 0 0 chr12 63565421 63565485 -57692045 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 9 1069 2935 148 5 88 chr12 63565485 63565921 -57691609 - L1_Mm LINE L1 -1018 4865 4479 9 1069 2067 146 22 3 chr12 63565909 63566279 -57691251 + L1_Mur2 LINE L1 5016 5392 -485 9 1069 4219 263 36 53 chr12 63567503 63569781 -57687749 - Lx5 LINE L1 -18 7032 4794 1 133 1310 57 11 0 chr12 63569816 63569991 -57687539 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1 1070 714 96 26 0 chr12 63569993 63570108 -57687422 - BC1_Mm scRNA scRNA -28 124 7 1 1070 608 195 65 0 chr12 63571525 63571648 -57685882 - L1_Mur2 LINE L1 -6359 353 223 1 1070 2092 156 14 3 chr12 63571686 63572039 -57685491 + Lx3A LINE L1 6625 6981 0 1 1070 36 62 0 0 chr12 63572059 63572123 -57685407 + AT_rich Low_complexity Low_complexity 1 64 0 1 1070 394 286 40 22 chr12 63572145 63572370 -57685160 - Lx7 LINE L1 -1776 5697 5433 1 1070 750 181 5 50 chr12 63572339 63572558 -57684972 - Lx5 LINE L1 -1935 3945 3737 1 1070 8130 192 24 24 chr12 63572582 63573883 -57683647 + Lx5 LINE L1 4100 5414 -463 1 1070 6554 123 29 5 chr12 63573883 63574925 -57682605 + Lx3A LINE L1 5910 6976 -5 1 1070 8130 216 25 15 chr12 63574925 63576084 -57681446 + Lx5 LINE L1 5415 6580 -470 1 1070 3017 213 104 34 chr12 63576084 63576391 -57681139 + RMER17B LTR ERVK 1 324 -634 1 1070 549 0 0 0 chr12 63576391 63576452 -57681078 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1070 3017 213 104 34 chr12 63576452 63576539 -57680991 + RMER17B LTR ERVK 325 419 -539 1 1070 773 24 23 31 chr12 63576539 63576667 -57680863 + (TTCTC)n Simple_repeat Simple_repeat 5 131 0 1 1070 3017 213 104 34 chr12 63576667 63577076 -57680454 + RMER17B LTR ERVK 420 862 -96 1 1070 2402 105 3 29 chr12 63577114 63577495 -57680035 + L1_Mus4 LINE L1 6251 6621 -15 1 1070 1413 224 124 14 chr12 63577506 63577877 -57679653 + Lx5 LINE L1 6639 7050 0 1 1070 401 123 0 0 chr12 63577884 63577941 -57679589 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 1 1070 809 162 7 0 chr12 63577941 63578095 -57679435 + GA-rich Low_complexity Low_complexity 2 156 0 1 1070 657 38 0 0 chr12 63578136 63578216 -57679314 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 1 1070 919 241 11 0 chr12 63578216 63578403 -57679127 + MTC LTR MaLR 201 389 -32 1 1070 2567 124 7 34 chr12 63578420 63578493 -57679037 + L1_Mus2 LINE L1 5486 5561 -322 1 1070 5023 35 0 0 chr12 63578493 63579086 -57678444 + L1Md_T LINE L1 5990 6582 0 1 1070 7175 87 2 28 chr12 63579086 63580123 -57677407 + L1_Mus2 LINE L1 5562 6566 0 1 1070 936 314 39 16 chr12 63580448 63581074 -57676456 + L1MC1 LINE L1 5542 6206 -127 1 1070 21 36 0 0 chr12 63581156 63581184 -57676346 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 916 325 38 71 chr12 63582076 63582582 -57674948 + Lx8 LINE L1 6888 7376 -97 1 1070 2096 128 89 11 chr12 63582861 63583232 -57674298 + Lx LINE L1 6252 6651 -3 1 1070 28 29 0 0 chr12 63583265 63583300 -57674230 + AT_rich Low_complexity Low_complexity 1 35 0 1 1070 236 306 119 59 chr12 63583708 63583927 -57673603 + MER89 LTR ERV1 269 500 -59 1 1070 362 347 83 26 chr12 63584262 63584490 -57673040 + MER110 LTR ERV1 116 356 -135 1 1070 25 31 0 0 chr12 63584802 63584834 -57672696 + AT_rich Low_complexity Low_complexity 1 32 0 1 1070 28 71 0 0 chr12 63585011 63585067 -57672463 + AT_rich Low_complexity Low_complexity 1 56 0 1 1070 22 56 0 0 chr12 63585471 63585507 -57672023 + AT_rich Low_complexity Low_complexity 1 36 0 1 1070 342 0 0 0 chr12 63585767 63585805 -57671725 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1070 23 0 0 0 chr12 63586261 63586284 -57671246 + AT_rich Low_complexity Low_complexity 1 23 0 1 1070 364 210 25 6 chr12 63586512 63586670 -57670860 + (TCTA)n Simple_repeat Simple_repeat 1 161 0 1 1070 4683 101 31 1 chr12 63586749 63586833 -57670697 - L1_Mus3 LINE L1 -1 6637 6536 1 1070 362 21 0 21 chr12 63586833 63586881 -57670649 + (CCCCCT)n Simple_repeat Simple_repeat 5 51 0 1 1070 4683 101 31 1 chr12 63586881 63587473 -57670057 - L1_Mus3 LINE L1 -103 6535 5942 1 1070 27 73 0 0 chr12 63587846 63587901 -57669629 + AT_rich Low_complexity Low_complexity 1 55 0 1 1070 377 339 23 0 chr12 63588036 63588166 -57669364 - B3A SINE B2 -56 142 10 1 1070 374 329 96 40 chr12 63588141 63588442 -57669088 + Tigger5 DNA MER2_type 2088 2405 -1 1 1070 236 388 20 0 chr12 63588463 63588561 -57668969 - RMER12 LTR ERVK -480 842 743 1 1070 191 291 37 0 chr12 63588796 63588862 -57668668 - L2a LINE L2 -318 3108 3039 1 1070 6805 88 51 20 chr12 63589300 63590292 -57667238 - RLTR13D5 LTR ERVK 0 1023 1 1 1070 269 132 5 9 chr12 63590374 63590445 -57667085 + L1_Mus3 LINE L1 6570 6639 -15 1 1070 378 0 0 0 chr12 63590445 63590487 -57667043 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1070 248 343 22 0 chr12 63590893 63591030 -57666500 + L1M3 LINE L1 3386 3525 -2615 1 1070 463 300 18 30 chr12 63591050 63591215 -57666315 + Lx9 LINE L1 7165 7327 -317 1 1070 22 0 0 0 chr12 63591269 63591291 -57666239 + AT_rich Low_complexity Low_complexity 1 22 0 1 1070 342 227 8 15 chr12 63591396 63591530 -57666000 + (TA)n Simple_repeat Simple_repeat 2 134 0 1 1070 200 234 21 0 chr12 63591590 63591637 -57665893 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 1 1070 28 29 0 0 chr12 63591811 63591846 -57665684 + AT_rich Low_complexity Low_complexity 1 35 0 1 1070 1559 49 0 10 chr12 63591867 63592073 -57665457 + L1Md_F3 LINE L1 6376 6579 -5 1 1070 291 319 0 0 chr12 63592349 63592440 -57665090 + Lx7 LINE L1 6747 6837 -859 1 1070 323 354 70 10 chr12 63592545 63592745 -57664785 + Lx7 LINE L1 6972 7183 -513 1 1070 312 281 60 33 chr12 63593677 63593828 -57663702 + MER21-int LTR ERV1 1695 1849 -2342 1 1070 32 43 0 0 chr12 63594121 63594167 -57663363 + AT_rich Low_complexity Low_complexity 1 46 0 1 1070 261 404 16 38 chr12 63594516 63594699 -57662831 + MER21B LTR ERV1 551 729 -134 1 1070 1149 201 134 72 chr12 63594840 63595199 -57662331 - RMER13B LTR ERVK 0 908 528 1 1070 903 126 7 0 chr12 63595194 63595329 -57662201 - RMER13B LTR ERVK -489 419 284 1 1070 386 261 207 0 chr12 63595313 63595424 -57662106 - RMER13B LTR ERVK -774 134 1 1 1070 415 304 51 54 chr12 63595506 63595822 -57661708 - L1MA9 LINE L1 -3 6309 5995 1 1070 22 35 0 0 chr12 63596617 63596646 -57660884 + AT_rich Low_complexity Low_complexity 1 29 0 1 1070 1891 147 66 0 chr12 63596654 63596974 -57660556 - Lx3A LINE L1 -9 6972 6632 1 1070 58 74 0 0 chr12 63597020 63597141 -57660389 + AT_rich Low_complexity Low_complexity 1 121 0 1 1070 23 0 0 0 chr12 63598267 63598290 -57659240 + AT_rich Low_complexity Low_complexity 1 23 0 1 1070 6240 109 0 3 chr12 63600285 63601184 -57656346 - L1_Mus1 LINE L1 0 6567 5672 1 1070 5790 118 36 2 chr12 63601187 63602804 -57654726 + L1Md_F LINE L1 395 2068 -3815 1 1070 21553 105 5 2 chr12 63602799 63605304 -57652226 - L1VL4 LINE L1 -1407 4476 1969 1 1070 216 86 0 0 chr12 63605304 63605339 -57652191 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1070 21553 137 8 51 chr12 63605339 63606650 -57650880 - L1VL4 LINE L1 -3915 1968 725 1 1070 339 277 23 15 chr12 63606652 63606784 -57650746 - L1VL4 LINE L1 -5807 809 677 1 1070 575 304 31 49 chr12 63606821 63607225 -57650305 - L1VL1 LINE L1 -6040 382 54 1 1070 261 57 0 0 chr12 63607667 63607702 -57649828 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1070 4849 206 39 13 chr12 63608155 63609232 -57648298 - Lx3C LINE L1 -99 6877 5862 1 1070 7666 8 0 0 chr12 63609758 63610622 -57646908 + L1Md_A LINE L1 4723 5586 -297 1 1070 8664 15 2 1 chr12 63610622 63611617 -57645913 + L1Md_A LINE L1 5587 6582 0 1 1070 345 47 0 0 chr12 63611863 63611906 -57645624 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1070 216 0 0 0 chr12 63612142 63612166 -57645364 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1070 612 206 0 0 chr12 63612354 63612495 -57645035 + (TA)n Simple_repeat Simple_repeat 2 142 0 1 1070 23 43 0 21 chr12 63612580 63612596 -57644934 + AT_rich Low_complexity Low_complexity 1 16 0 1 1070 1053 108 0 0 chr12 63612596 63612735 -57644795 + B1_Mus1 SINE Alu 1 139 -9 1 1070 23 43 0 21 chr12 63612735 63612766 -57644764 + AT_rich Low_complexity Low_complexity 1 31 0 1 1070 486 49 0 0 chr12 63612940 63613001 -57644529 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1070 263 28 28 0 chr12 63613007 63613043 -57644487 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1070 333 0 0 0 chr12 63613077 63613114 -57644416 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1070 270 347 26 20 chr12 63613223 63613376 -57644154 - MLT1F-int LTR MaLR -1147 342 189 1 1070 225 254 63 0 chr12 63613383 63613446 -57644084 + MLT2B2 LTR ERVL 8 74 -441 1 1070 536 367 58 32 chr12 63613609 63613919 -57643611 + MLT2B3 LTR ERVL 24 341 -213 1 1070 360 0 0 0 chr12 63614653 63614693 -57642837 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1070 4949 99 36 0 chr12 63614704 63615431 -57642099 - L1_Mus4 LINE L1 0 6636 5884 1 1070 1126 69 7 0 chr12 63615512 63615657 -57641873 - B1_Mus1 SINE Alu 0 148 3 1 1070 1069 83 14 0 chr12 63616425 63616570 -57640960 - B1_Mm SINE Alu 0 147 1 1 1070 1130 377 48 34 chr12 63616632 63617585 -57639945 - Lx9 LINE L1 -213 7431 6465 1 1070 1153 51 0 0 chr12 63617912 63618050 -57639480 + B1_Mus1 SINE Alu 2 139 -9 1 1070 315 0 0 0 chr12 63618050 63618085 -57639445 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1070 31 44 0 0 chr12 63618160 63618205 -57639325 + AT_rich Low_complexity Low_complexity 1 45 0 1 1070 4979 223 87 33 chr12 63618222 63619528 -57638002 - Lx5 LINE L1 0 7050 5674 1 1070 550 208 0 32 chr12 63619517 63619641 -57637889 + L1_Mur2 LINE L1 2169 2288 -3589 1 1070 25 65 0 0 chr12 63621227 63621273 -57636257 + AT_rich Low_complexity Low_complexity 1 46 0 1 1070 486 230 48 96 chr12 63621744 63621994 -57635536 - Lx7 LINE L1 -1532 6164 5927 1 1070 2211 194 44 53 chr12 63622011 63622243 -57635287 - Lx7 LINE L1 -692 5188 4961 1 1070 797 0 11 0 chr12 63622243 63622336 -57635194 + (TTTC)n Simple_repeat Simple_repeat 1 94 0 1 1070 3957 148 23 0 chr12 63622336 63622976 -57634554 - Lx3B LINE L1 -11 6962 6308 1 1070 2211 194 44 53 chr12 63622976 63623288 -57634242 - Lx7 LINE L1 -920 4960 4649 1 1070 243 0 0 0 chr12 63623337 63623364 -57634166 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1070 286 259 11 11 chr12 63623461 63623551 -57633979 - Lx9 LINE L1 -7 7637 7548 1 1070 3277 253 38 25 chr12 63623790 63624670 -57632860 - Lx7 LINE L1 -6552 1176 286 1 1070 415 106 23 58 chr12 63625107 63625278 -57632252 + T-rich Low_complexity Low_complexity 4 168 0 1 1070 1165 82 0 0 chr12 63625284 63625431 -57632099 - B1_Mm SINE Alu 0 147 1 1 1070 1346 60 6 0 chr12 63625553 63625735 -57631795 - L1Md_F3 LINE L1 -16 6568 6386 1 1070 334 305 143 0 chr12 63625958 63626063 -57631467 + RSINE1 SINE B4 25 144 -21 1 1070 22 35 0 0 chr12 63626255 63626284 -57631246 + AT_rich Low_complexity Low_complexity 1 29 0 1 1070 21 0 0 0 chr12 63626859 63626880 -57630650 + AT_rich Low_complexity Low_complexity 1 21 0 1 1070 2047 139 3 3 chr12 63626981 63627291 -57630239 + RLTR10E LTR ERVK 1 310 -1 2 1070 195 39 0 0 chr12 63627291 63627312 -57630218 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 1070 3394 261 149 29 chr12 63627312 63628580 -57628950 - Lx7 LINE L1 -102 7594 6175 2 1070 408 135 0 0 chr12 63628581 63628655 -57628875 + (TA)n Simple_repeat Simple_repeat 1 74 0 2 1070 28 71 0 0 chr12 63629249 63629305 -57628225 + AT_rich Low_complexity Low_complexity 1 56 0 2 1070 245 322 34 0 chr12 63630350 63630409 -57627121 + B1F SINE Alu 35 95 -54 2 1070 213 94 0 0 chr12 63630561 63630593 -57626937 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 1070 4119 103 31 5 chr12 63631191 63631803 -57625727 + L1_Mus3 LINE L1 6010 6637 -1 2 1070 26 64 0 0 chr12 63631944 63631991 -57625539 + AT_rich Low_complexity Low_complexity 1 47 0 2 1070 352 185 63 32 chr12 63631991 63632086 -57625444 - Lx3A LINE L1 0 7009 6895 2 1070 283 274 198 10 chr12 63632086 63632182 -57625348 - MTEa LTR MaLR -152 227 114 2 1070 329 58 0 19 chr12 63632191 63632244 -57625286 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 2 1070 248 266 0 12 chr12 63632264 63632344 -57625186 - MTEa LTR MaLR -300 79 1 2 1070 944 296 65 28 chr12 63632344 63632640 -57624890 + RCHARR1 DNA MER1_type 498 804 -170 2 1070 422 36 18 0 chr12 63632640 63632696 -57624834 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 1070 944 296 65 28 chr12 63632696 63632857 -57624673 + RCHARR1 DNA MER1_type 805 972 -2 2 1070 190 294 103 0 chr12 63632902 63632970 -57624560 + MIR SINE MIR 43 117 -151 2 1070 2874 206 61 37 chr12 63633700 63634426 -57623104 + L1_Mur1 LINE L1 1 743 -6239 2 1070 1366 106 0 5 chr12 63634423 63634612 -57622918 + L1_Mus4 LINE L1 6139 6326 -310 2 1070 288 214 29 0 chr12 63634653 63634723 -57622807 - MER89 LTR ERV1 0 559 488 2 1070 1069 290 28 7 chr12 63634765 63635050 -57622480 + Lx5 LINE L1 6741 7031 -19 2 1070 475 353 72 34 chr12 63635087 63635351 -57622179 - MER89 LTR ERV1 -67 492 219 2 1070 1629 185 87 19 chr12 63635359 63635728 -57621802 + ORR1B1 LTR MaLR 1 394 0 2 1070 2933 24 0 0 chr12 63635863 63636200 -57621330 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1070 20583 37 48 15 chr12 63636200 63638780 -57618750 + IAPEz-int LTR ERVK 8 2674 -3807 2 1070 9529 18 3 0 chr12 63638758 63639834 -57617696 + IAPEz-int LTR ERVK 5403 6481 0 2 1070 2933 24 0 0 chr12 63639834 63640171 -57617359 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1070 351 0 0 0 chr12 63640602 63640641 -57616889 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1070 22 35 0 0 chr12 63640711 63640740 -57616790 + AT_rich Low_complexity Low_complexity 1 29 0 2 1070 7404 117 6 17 chr12 63640789 63641938 -57615592 - Lx3_Mus LINE L1 0 7009 5910 2 1070 327 25 0 0 chr12 63641938 63641978 -57615552 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2 1070 1022 99 35 0 chr12 63641980 63642122 -57615408 - B1_Mus1 SINE Alu 0 148 2 2 1070 6805 106 1 13 chr12 63642122 63642732 -57614798 - Lx3_Mus LINE L1 -1064 5909 5359 2 1070 37914 31 2 0 chr12 63642738 63650864 -57606666 - L1Md_T LINE L1 0 6585 1 2 1070 5561 97 93 2 chr12 63650864 63650989 -57606541 - Lx3_Mus LINE L1 -515 5371 5247 2 1070 441 0 0 0 chr12 63650989 63651038 -57606492 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1070 5561 97 93 2 chr12 63651038 63651821 -57605709 - Lx3_Mus LINE L1 -640 5246 4380 2 1070 291 204 97 9 chr12 63651828 63651942 -57605588 - Lx9 LINE L1 -41 7603 7480 2 1070 237 24 71 0 chr12 63651942 63651984 -57605546 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1070 195 167 0 0 chr12 63652014 63652056 -57605474 + CT-rich Low_complexity Low_complexity 1 42 0 2 1070 1191 35 0 0 chr12 63652056 63652200 -57605330 + (TA)n Simple_repeat Simple_repeat 2 145 0 2 1070 376 231 22 0 chr12 63652201 63652292 -57605238 - Lx9 LINE L1 -235 7409 7317 2 1070 818 280 110 21 chr12 63652741 63653022 -57604508 - Lx9 LINE L1 -330 7314 7009 2 1070 527 92 0 11 chr12 63653067 63653155 -57604375 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2 1070 265 297 94 0 chr12 63653176 63653240 -57604290 - ID4 SINE ID -8 75 6 2 1070 285 29 0 0 chr12 63653286 63653320 -57604210 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1070 447 19 0 0 chr12 63654364 63654416 -57603114 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1070 186 43 0 0 chr12 63656819 63656842 -57600688 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 1070 445 250 0 0 chr12 63657120 63657216 -57600314 + L1Md_A LINE L1 332 427 -6189 2 1070 19302 104 53 1 chr12 63657212 63661345 -57596185 + L1Md_A LINE L1 928 5618 -265 2 1070 11777 86 108 9 chr12 63661343 63663730 -57593800 - L1Md_A LINE L1 -2634 3249 632 2 1070 899 267 139 19 chr12 63664052 63664426 -57593104 - MTD LTR MaLR 0 419 1 2 1070 2238 285 115 11 chr12 63664430 63665221 -57592309 - MTD-int LTR MaLR -6 1252 380 2 1070 30 0 0 0 chr12 63665331 63665361 -57592169 + AT_rich Low_complexity Low_complexity 1 30 0 2 1070 243 0 0 0 chr12 63665482 63665509 -57592021 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 2 1070 25 0 0 0 chr12 63665623 63665648 -57591882 + AT_rich Low_complexity Low_complexity 1 25 0 2 1070 368 239 76 8 chr12 63665657 63665775 -57591755 - Lx9 LINE L1 -171 7473 7348 2 1070 278 211 43 17 chr12 63665801 63665839 -57591691 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1070 1927 101 9 31 chr12 63665839 63666157 -57591373 + L1_Mus3 LINE L1 6320 6630 -8 2 1070 278 211 43 17 chr12 63666157 63666234 -57591296 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1070 24 53 0 0 chr12 63666234 63666272 -57591258 + AT_rich Low_complexity Low_complexity 1 38 0 2 1070 30 27 0 0 chr12 63666495 63666532 -57590998 + AT_rich Low_complexity Low_complexity 1 37 0 2 1070 477 289 0 26 chr12 63666684 63666801 -57590729 - B1_Mur1 SINE Alu 0 149 36 2 1070 234 0 0 0 chr12 63667561 63667587 -57589943 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 1070 281 281 9 19 chr12 63667602 63667707 -57589823 - Lx9 LINE L1 -176 7468 7365 2 1070 1215 316 53 23 chr12 63667802 63668333 -57589197 - Lx9 LINE L1 -452 7192 6646 2 1070 479 345 37 37 chr12 63668511 63668728 -57588802 - RMER12 LTR ERVK -2 1320 1104 2 1070 904 182 6 11 chr12 63668853 63669031 -57588499 - RLTR22_Mur LTR ERVK -988 860 684 2 1070 1635 42 0 0 chr12 63669031 63669224 -57588306 - L1Md_F2 LINE L1 -414 6168 5976 2 1070 2637 40 0 12 chr12 63669224 63669555 -57587975 + L1Md_F2 LINE L1 6254 6580 -2 2 1070 3754 134 52 47 chr12 63669555 63669960 -57587570 - RLTR22_Mur LTR ERVK -1149 699 269 2 1070 216 0 0 0 chr12 63669960 63669984 -57587546 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1070 596 176 0 73 chr12 63669987 63670152 -57587378 - Lx3C LINE L1 -9 6967 6815 2 1070 3754 134 52 47 chr12 63670152 63670438 -57587092 - RLTR22_Mur LTR ERVK -1580 268 1 2 1070 1055 311 130 14 chr12 63670521 63671004 -57586526 - Lx8 LINE L1 -266 7207 6669 2 1070 4167 176 36 20 chr12 63671560 63672214 -57585316 + L1VL1 LINE L1 276 950 -5472 2 1070 1522 44 16 0 chr12 63672214 63672397 -57585133 + B2_Mm2 SINE B2 1 186 -9 2 1070 9727 122 12 5 chr12 63672397 63674020 -57583510 + L1VL1 LINE L1 951 2577 -1121 2 1070 291 114 0 0 chr12 63674163 63674207 -57583323 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 2 1070 254 292 14 0 chr12 63674210 63674282 -57583248 + GA-rich Low_complexity Low_complexity 2 74 0 2 1070 253 356 11 32 chr12 63674811 63674904 -57582626 + MLT1E1A LTR MaLR 23 113 -567 2 1070 1317 248 10 16 chr12 63675170 63675473 -57582057 + Lx5 LINE L1 6744 7044 -6 2 1070 723 142 0 0 chr12 63675515 63675635 -57581895 + (GGGA)n Simple_repeat Simple_repeat 3 122 0 2 1070 837 279 42 12 chr12 63675642 63675976 -57581554 - Lx7 LINE L1 -1402 6294 5951 2 1070 2889 190 19 7 chr12 63676088 63676561 -57580969 - L1_Mur2 LINE L1 -773 5104 4633 2 1070 194 0 0 37 chr12 63676561 63676588 -57580942 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1070 2889 190 19 7 chr12 63676588 63676693 -57580837 - L1_Mur2 LINE L1 -1245 4632 4520 2 1070 2645 195 103 29 chr12 63676704 63676904 -57580626 + Lx2 LINE L1 5180 5419 -467 2 1070 2317 69 24 27 chr12 63676904 63677232 -57580298 - IAPLTR2b LTR ERVK 0 327 1 2 1070 3893 245 123 18 chr12 63677232 63678674 -57578856 + Lx2 LINE L1 5420 6997 0 2 1070 24 0 0 0 chr12 63679893 63679917 -57577613 + AT_rich Low_complexity Low_complexity 1 24 0 2 1070 346 379 75 3 chr12 63680130 63680490 -57577040 + L1M4c LINE L1 93 478 -5906 2 1070 285 29 0 0 chr12 63680947 63680981 -57576549 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1070 396 0 0 0 chr12 63680981 63681024 -57576506 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1070 26 30 0 0 chr12 63681097 63681130 -57576400 + AT_rich Low_complexity Low_complexity 1 33 0 2 1070 1178 68 0 0 chr12 63681189 63681336 -57576194 - B1_Mus2 SINE Alu 0 147 1 2 1070 3168 141 39 158 chr12 63681533 63682543 -57574987 - RMER17D LTR ERVK 0 889 1 2 1070 268 258 65 0 chr12 63682680 63682742 -57574788 - ID_B1 SINE B4 -5 219 154 2 1070 26848 77 1 5 chr12 63682782 63686444 -57571086 + L1Md_F2 LINE L1 1940 5585 -298 2 1070 7981 47 2 6 chr12 63686445 63687433 -57570097 + L1Md_F2 LINE L1 5587 6570 -12 2 1070 1374 256 76 11 chr12 63689585 63690031 -57567499 - Lx9 LINE L1 -2 7642 7168 2 1070 2120 260 88 51 chr12 63690380 63691183 -57566347 + Lx2B LINE L1 6160 6992 -8 2 1070 26 30 0 0 chr12 63691188 63691221 -57566309 + AT_rich Low_complexity Low_complexity 1 33 0 2 1070 21 0 0 0 chr12 63691246 63691267 -57566263 + AT_rich Low_complexity Low_complexity 1 21 0 2 1070 235 279 18 46 chr12 63691322 63691431 -57566099 + L1MC LINE L1 3828 3933 -2213 2 1070 24 77 0 0 chr12 63691498 63691550 -57565980 + AT_rich Low_complexity Low_complexity 1 52 0 2 1070 223 167 16 32 chr12 63691582 63691644 -57565886 + T-rich Low_complexity Low_complexity 2 62 0 2 1070 499 332 91 25 chr12 63691873 63692191 -57565339 - Lx7 LINE L1 -411 7285 6947 2 1070 351 186 0 0 chr12 63692249 63692308 -57565222 + Lx3_Mus LINE L1 6504 6562 -447 2 1070 1208 157 0 5 chr12 63692314 63692519 -57565011 - Lx LINE L1 -42 6612 6409 2 1070 19467 99 9 7 chr12 63692518 63696041 -57561489 - L1Md_F LINE L1 -1870 4013 484 2 1070 4286 82 34 8 chr12 63696041 63696632 -57560898 - RLTR13D5 LTR ERVK -417 606 1 2 1070 1263 370 32 35 chr12 63698108 63698907 -57558623 - Lx8 LINE L1 -181 7292 6496 2 1070 228 209 30 0 chr12 63699313 63699380 -57558150 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1070 232 281 35 0 chr12 63699498 63699555 -57557975 + MLT1A1 LTR MaLR 284 342 -66 2 1070 726 12 0 0 chr12 63699555 63699638 -57557892 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1070 843 105 0 0 chr12 63699864 63699988 -57557542 + (TA)n Simple_repeat Simple_repeat 1 124 0 2 1071 25 31 0 0 chr12 63701064 63701096 -57556434 + AT_rich Low_complexity Low_complexity 1 32 0 2 1071 1373 304 49 12 chr12 63701986 63702563 -57554967 - Lx6 LINE L1 -43 7417 6455 2 1071 728 77 10 0 chr12 63702563 63702667 -57554863 + (TA)n Simple_repeat Simple_repeat 1 105 0 2 1071 767 268 123 8 chr12 63702667 63702811 -57554719 - Lx6 LINE L1 -694 6766 6597 2 1071 365 291 139 29 chr12 63703279 63703552 -57553978 - L1MC3 LINE L1 -323 7462 7160 2 1071 339 285 136 65 chr12 63703671 63703855 -57553675 - L1MC3 LINE L1 -879 7003 6807 2 1071 767 295 22 63 chr12 63703877 63704148 -57553382 - MTEb LTR MaLR -43 336 77 3 1071 388 323 101 19 chr12 63704562 63705099 -57552431 - L1MC3 LINE L1 -1425 6360 5780 2 1071 321 100 0 0 chr12 63705816 63705866 -57551664 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1071 576 292 100 25 chr12 63705872 63706272 -57551258 - L1MC3 LINE L1 -1178 4968 4539 2 1071 29 78 0 0 chr12 63706417 63706481 -57551049 + AT_rich Low_complexity Low_complexity 1 64 0 3 1071 1075 311 78 30 chr12 63706532 63707623 -57549907 - Lx6 LINE L1 -195 7265 5845 3 1071 3353 214 14 1 chr12 63707640 63708375 -57549155 + L1_Mur3 LINE L1 4876 5619 -261 3 1071 225 250 26 13 chr12 63708383 63708460 -57549070 - L1MB4 LINE L1 -53 6127 6050 3 1071 22 0 0 0 chr12 63708844 63708866 -57548664 + AT_rich Low_complexity Low_complexity 1 22 0 3 1071 503 242 159 0 chr12 63709351 63709461 -57548069 - RMER1A Other Other -13 1017 883 3 1071 189 0 0 0 chr12 63709461 63709482 -57548048 + (CCAA)n Simple_repeat Simple_repeat 4 24 0 3 1071 503 242 159 0 chr12 63709482 63709528 -57548002 - RMER1A Other Other -148 882 837 3 1071 181 379 41 35 chr12 63710591 63710736 -57546794 - MER5B DNA MER1_type -31 147 2 3 1071 210 309 0 12 chr12 63711069 63711151 -57546379 + (TATG)n Simple_repeat Simple_repeat 1 81 0 3 1071 284 226 11 0 chr12 63711153 63711246 -57546284 + (TG)n Simple_repeat Simple_repeat 1 94 0 3 1071 254 381 30 91 chr12 63712085 63712284 -57545246 - B3 SINE B2 -28 188 2 3 1071 234 167 0 0 chr12 63712368 63712428 -57545102 + (CCAA)n Simple_repeat Simple_repeat 3 62 0 3 1071 772 304 59 31 chr12 63713294 63713650 -57543880 - ORR1D2 LTR MaLR -2 368 3 3 1071 662 45 0 11 chr12 63713662 63713753 -57543777 + (GA)n Simple_repeat Simple_repeat 2 91 0 3 1071 261 0 0 0 chr12 63714560 63714589 -57542941 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1071 232 330 18 36 chr12 63714813 63714923 -57542607 - L1MB7 LINE L1 -81 6103 5996 3 1071 519 17 0 0 chr12 63714939 63714999 -57542531 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1071 265 279 103 0 chr12 63715737 63715873 -57541657 - L1MB7 LINE L1 -670 5514 5365 3 1071 233 29 0 29 chr12 63716067 63716102 -57541428 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1071 285 269 138 15 chr12 63716106 63716302 -57541228 - Lx7 LINE L1 -2 7694 7475 3 1071 770 309 132 6 chr12 63716404 63716730 -57540800 - MTEa LTR MaLR -4 375 9 3 1071 443 345 18 29 chr12 63716737 63716907 -57540623 - MTEa-int LTR MaLR -2 1578 1411 3 1071 414 352 56 0 chr12 63716950 63717075 -57540455 + B3 SINE B2 55 186 -30 3 1071 863 291 104 114 chr12 63717101 63717341 -57540189 - MTEa-int LTR MaLR -154 1426 1232 3 1071 288 0 0 0 chr12 63717341 63717373 -57540157 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1071 863 291 104 114 chr12 63717373 63717621 -57539909 - MTEa-int LTR MaLR -349 1231 943 3 1071 396 203 118 53 chr12 63717733 63717920 -57539610 + Lx7 LINE L1 2993 3191 -2689 3 1071 1182 236 31 23 chr12 63717934 63718164 -57539366 + Lx7 LINE L1 4394 4619 -1261 3 1071 405 0 0 0 chr12 63718164 63718209 -57539321 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1071 1182 236 31 23 chr12 63718209 63718329 -57539201 + Lx7 LINE L1 4620 4746 -1134 3 1071 1212 201 12 0 chr12 63718315 63718564 -57538966 - L1_Mur2 LINE L1 -479 5398 5147 3 1071 276 246 68 53 chr12 63718627 63718760 -57538770 + Lx7 LINE L1 5200 5334 -546 3 1071 3282 102 2 7 chr12 63718764 63719226 -57538304 + Lx3_Mus LINE L1 6141 6600 -409 3 1071 5934 51 0 7 chr12 63719210 63719956 -57537574 - L1Md_F2 LINE L1 -260 5623 4883 3 1071 7592 50 3 5 chr12 63719958 63720914 -57536616 + L1Md_F2 LINE L1 5629 6582 0 3 1071 2435 145 5 24 chr12 63720924 63721326 -57536204 + Lx3A LINE L1 6567 6966 -15 3 1071 252 0 0 0 chr12 63721326 63721354 -57536176 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 1071 2435 145 5 24 chr12 63721354 63721374 -57536156 + Lx3A LINE L1 6967 6981 0 3 1071 4895 257 87 13 chr12 63721390 63723300 -57534230 + Lx7 LINE L1 5318 7377 -319 3 1071 232 211 0 17 chr12 63723304 63723362 -57534168 + Lx7 LINE L1 7637 7693 -3 3 1071 3070 94 7 26 chr12 63723510 63723970 -57533560 + L1Md_F2 LINE L1 6123 6573 -9 3 1071 28 48 0 0 chr12 63724359 63724401 -57533129 + AT_rich Low_complexity Low_complexity 1 42 0 3 1071 24 0 0 0 chr12 63725584 63725608 -57531922 + AT_rich Low_complexity Low_complexity 1 24 0 3 1071 731 287 80 68 chr12 63726234 63726571 -57530959 + Lx8 LINE L1 6413 6753 -720 3 1071 3362 55 5 2 chr12 63727279 63727702 -57529828 - L1Md_F3 LINE L1 -1 6583 6160 3 1071 3260 187 77 39 chr12 63727796 63728508 -57529022 + Lx2B LINE L1 6259 6997 -3 3 1071 887 177 13 0 chr12 63728678 63728836 -57528694 + URR1A DNA MER1_type 67 226 0 3 1071 706 249 64 32 chr12 63728837 63728861 -57528669 + L1M2 LINE L1 5509 5533 -758 3 1071 5060 50 0 2 chr12 63728861 63729486 -57528044 + L1Md_F2 LINE L1 5957 6580 -2 3 1071 706 249 64 32 chr12 63729486 63729743 -57527787 + L1M2 LINE L1 5534 5798 -493 3 1071 386 251 77 59 chr12 63729745 63729789 -57527741 - CYRA11_Mm Unknown Y-chromosome -256 361 228 3 1071 802 148 34 0 chr12 63729789 63729938 -57527592 + URR1B DNA MER1_type 72 225 0 3 1071 386 251 77 59 chr12 63729938 63729965 -57527565 - CYRA11_Mm Unknown Y-chromosome -256 227 138 3 1071 516 246 0 0 chr12 63730286 63730396 -57527134 - PB1D9 SINE Alu -6 114 5 3 1071 713 70 10 0 chr12 63731036 63731136 -57526394 + (TC)n Simple_repeat Simple_repeat 1 101 0 3 1071 285 51 0 0 chr12 63731505 63731544 -57525986 + (TTG)n Simple_repeat Simple_repeat 1 39 0 3 1071 271 154 9 71 chr12 63731552 63731664 -57525866 + (TTTG)n Simple_repeat Simple_repeat 1 105 0 3 1071 1055 90 14 0 chr12 63731664 63731808 -57525722 - B1_Mus2 SINE Alu -1 146 1 3 1071 432 0 0 0 chr12 63732385 63732433 -57525097 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1071 279 0 0 0 chr12 63732433 63732463 -57525067 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1071 344 22 0 0 chr12 63732708 63732754 -57524776 - L1_Mus2 LINE L1 -1 6565 6520 3 1071 252 0 0 0 chr12 63733704 63733732 -57523798 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1071 27 103 0 0 chr12 63734360 63734457 -57523073 + AT_rich Low_complexity Low_complexity 1 97 0 3 1071 6524 15 0 0 chr12 63734484 63735231 -57522299 + L1Md_T LINE L1 4840 5586 -297 3 1071 8483 28 1 0 chr12 63735231 63736224 -57521306 + L1Md_T LINE L1 5587 6580 -2 3 1071 189 0 0 0 chr12 63736242 63736263 -57521267 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1071 764 296 23 22 chr12 63736263 63736578 -57520952 - Lx5 LINE L1 -309 6741 6458 3 1071 1301 97 11 0 chr12 63736594 63736779 -57520751 + B2_Mm1t SINE B2 2 188 -5 3 1071 44 0 0 0 chr12 63736807 63736851 -57520679 + AT_rich Low_complexity Low_complexity 1 44 0 3 1071 972 304 102 17 chr12 63736878 63737438 -57520092 - L1_Mus1 LINE L1 -950 6746 5882 3 1071 378 0 0 0 chr12 63737438 63737480 -57520050 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1071 3735 193 120 20 chr12 63737548 63738769 -57518761 - L1_Mus1 LINE L1 0 6567 4252 3 1071 243 0 0 0 chr12 63738769 63738796 -57518734 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1071 360 0 0 0 chr12 63738796 63738836 -57518694 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1071 2146 273 194 33 chr12 63738836 63739209 -57518321 - L1_Mus1 LINE L1 -1629 4251 3864 3 1071 2576 106 3 3 chr12 63739209 63739570 -57517960 + MTB LTR MaLR 32 392 -8 3 1071 5670 150 23 85 chr12 63739574 63740744 -57516786 + MTB-int LTR MaLR 1 1098 0 3 1071 2887 93 5 15 chr12 63740744 63741148 -57516382 + MTB LTR MaLR 1 400 0 3 1071 4262 230 86 128 chr12 63741166 63742149 -57515381 - L1_Mus1 LINE L1 -2253 3627 2602 3 1071 858 62 12 15 chr12 63742149 63742280 -57515250 + B1_Mus2 SINE Alu 16 146 -1 3 1071 4262 230 86 128 chr12 63742280 63742799 -57514731 - L1_Mus1 LINE L1 -2253 2601 2058 3 1071 261 0 0 0 chr12 63742799 63742828 -57514702 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1071 4262 230 86 128 chr12 63742828 63743296 -57514234 - L1_Mus1 LINE L1 -3823 2057 1616 3 1071 1732 160 6 75 chr12 63743314 63743659 -57513871 - ORR1A4 LTR MaLR -8 321 1 3 1071 521 292 143 0 chr12 63743703 63743864 -57513666 + MT2A LTR ERVL 100 283 -250 3 1071 234 0 0 0 chr12 63744271 63744297 -57513233 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 3 1071 3468 247 34 11 chr12 63745280 63746189 -57511341 + Lx5 LINE L1 6089 7417 -43 3 1071 24 53 0 0 chr12 63746846 63746884 -57510646 + AT_rich Low_complexity Low_complexity 1 38 0 3 1071 1238 239 59 70 chr12 63747186 63747627 -57509903 + Lx7 LINE L1 7261 7696 0 3 1071 399 21 0 0 chr12 63748245 63748293 -57509237 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1071 237 65 0 0 chr12 63748603 63748634 -57508896 + (TATATG)n Simple_repeat Simple_repeat 3 33 0 3 1071 195 69 0 0 chr12 63748650 63748679 -57508851 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1071 967 311 100 10 chr12 63748706 63749187 -57508343 - Lx7 LINE L1 -442 7254 6731 3 1071 270 179 0 0 chr12 63749377 63749433 -57508097 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1071 1049 304 38 56 chr12 63749481 63749931 -57507599 - ORR1D2-int LTR MaLR -927 443 2 3 1071 658 335 80 25 chr12 63749982 63750258 -57507272 - ORR1D2 LTR MaLR -77 293 3 3 1071 6896 197 49 7 chr12 63750456 63751997 -57505533 - Lx5 LINE L1 -4 7046 5445 3 1071 342 0 0 0 chr12 63752023 63752061 -57505469 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1071 480 346 30 153 chr12 63752068 63752268 -57505262 - Lx5 LINE L1 -82 7378 7192 3 1071 807 139 27 14 chr12 63752268 63752414 -57505116 + B1_Mus1 SINE Alu 1 148 0 3 1071 480 346 30 153 chr12 63752414 63752537 -57504993 - Lx5 LINE L1 -269 7191 7108 3 1071 2856 84 5 5 chr12 63752537 63752931 -57504599 + MTA_Mm LTR MaLR 3 396 0 3 1071 480 346 30 153 chr12 63752931 63752951 -57504579 - Lx5 LINE L1 -353 7107 7101 3 1071 261 0 0 0 chr12 63752951 63752980 -57504550 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1071 482 279 59 41 chr12 63752980 63753169 -57504361 - Lx5 LINE L1 -365 6685 6527 3 1071 296 245 61 10 chr12 63753851 63753950 -57503580 - Lx7 LINE L1 -1 7695 7592 3 1071 4813 98 6 1 chr12 63754785 63755460 -57502070 - Lx3_Mus LINE L1 -3 7006 6329 3 1071 519 282 66 20 chr12 63755573 63755725 -57501805 - ORR1D2 LTR MaLR -199 171 13 3 1071 707 243 19 14 chr12 63755953 63756139 -57501391 - ORR1C2 LTR MaLR -23 351 166 3 1071 313 141 59 0 chr12 63756143 63756228 -57501302 + GA-rich Low_complexity Low_complexity 2 91 0 3 1071 608 202 19 120 chr12 63756228 63756436 -57501094 - ORR1C2 LTR MaLR -197 187 1 3 1071 411 73 0 0 chr12 63757013 63757068 -57500462 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1071 3228 68 2 2 chr12 63757686 63758101 -57499429 + L1_Mus2 LINE L1 6151 6565 -1 3 1071 21 36 0 0 chr12 63758117 63758145 -57499385 + AT_rich Low_complexity Low_complexity 1 28 0 3 1071 252 0 0 0 chr12 63758412 63758440 -57499090 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1071 360 0 0 0 chr12 63758442 63758482 -57499048 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 3 1071 256 277 13 0 chr12 63758486 63758574 -57498956 - L1M2 LINE L1 -532 5771 5683 3 1071 1654 286 70 42 chr12 63758653 63759850 -57497680 + Lx7 LINE L1 5054 6261 -1435 3 1071 4062 63 0 0 chr12 63760741 63761246 -57496284 + L1_Mus1 LINE L1 6063 6567 0 3 1071 570 29 0 0 chr12 63761325 63761393 -57496137 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1071 1139 82 0 0 chr12 63761861 63762008 -57495522 + B1_Mus1 SINE Alu 1 147 -1 3 1071 212 0 36 0 chr12 63762050 63762078 -57495452 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1071 706 107 33 0 chr12 63762229 63762350 -57495180 + (GGGA)n Simple_repeat Simple_repeat 2 126 0 3 1071 450 0 0 0 chr12 63762508 63762558 -57494972 + (TAA)n Simple_repeat Simple_repeat 2 51 0 3 1071 22 56 0 0 chr12 63762909 63762945 -57494585 + AT_rich Low_complexity Low_complexity 1 36 0 4 1071 975 283 61 84 chr12 63763412 63764021 -57493509 + Lx7 LINE L1 5328 5921 -1775 4 1071 207 0 0 0 chr12 63764024 63764047 -57493483 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1071 540 0 0 0 chr12 63764385 63764445 -57493085 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1071 318 148 0 0 chr12 63764445 63764499 -57493031 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1071 267 283 16 74 chr12 63765487 63765609 -57491921 - L1M5 LINE L1 -1301 4845 4731 4 1071 219 45 0 62 chr12 63766834 63766882 -57490648 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 4 1071 779 234 27 51 chr12 63767229 63767486 -57490044 - Lx7 LINE L1 -4 7692 7442 4 1071 1463 247 28 15 chr12 63767477 63767824 -57489706 + Lx6 LINE L1 6818 7432 -264 4 1071 487 328 54 22 chr12 63767963 63768147 -57489383 - B3A SINE B2 -4 194 5 4 1071 688 326 48 7 chr12 63768161 63768430 -57489100 - Lx8 LINE L1 -766 6707 6428 4 1071 744 71 0 0 chr12 63768430 63768529 -57489001 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 1071 486 33 0 0 chr12 63768529 63768588 -57488942 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1071 598 351 40 26 chr12 63769702 63769816 -57487714 - Lx8 LINE L1 -131 7342 7236 4 1071 320 59 20 0 chr12 63769816 63769867 -57487663 + (CAA)n Simple_repeat Simple_repeat 2 53 0 4 1071 598 351 40 26 chr12 63769867 63770132 -57487398 - Lx8 LINE L1 -238 7235 6959 4 1071 306 67 0 0 chr12 63770150 63770195 -57487335 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1071 611 292 80 4 chr12 63770195 63770432 -57487098 + L1_Mur3 LINE L1 5445 5699 -181 4 1071 4112 71 2 0 chr12 63770901 63771435 -57486095 - L1Md_F2 LINE L1 -417 6165 5631 4 1071 724 160 8 0 chr12 63771448 63771573 -57485957 + B1_Mus1 SINE Alu 4 129 -19 4 1071 213 154 0 0 chr12 63771595 63771634 -57485896 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 4 1071 855 262 19 0 chr12 63771634 63771840 -57485690 - B3 SINE B2 -6 210 1 4 1071 929 299 82 41 chr12 63772303 63772591 -57484939 - MTD LTR MaLR -13 406 101 4 1071 2868 151 147 0 chr12 63772591 63773115 -57484415 - MT2B LTR ERVL 0 601 1 4 1071 929 299 82 41 chr12 63773115 63773216 -57484314 - MTD LTR MaLR -319 100 1 4 1071 503 144 10 0 chr12 63773423 63773520 -57484010 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 1071 23 33 0 0 chr12 63774557 63774587 -57482943 + AT_rich Low_complexity Low_complexity 1 30 0 4 1071 290 317 23 46 chr12 63775006 63775181 -57482349 + Lx8 LINE L1 6426 6596 -877 4 1071 9875 60 2 2 chr12 63775244 63776505 -57481025 + L1Md_F2 LINE L1 4325 5586 -297 4 1071 8136 50 1 0 chr12 63776505 63777500 -57480030 + L1Md_F2 LINE L1 5587 6582 0 4 1071 852 343 62 8 chr12 63777577 63777962 -57479568 + Lx8 LINE L1 6587 6992 -481 4 1071 24 0 0 0 chr12 63778386 63778410 -57479120 + AT_rich Low_complexity Low_complexity 1 24 0 4 1071 468 58 0 65 chr12 63779481 63779574 -57477956 + Lx LINE L1 6559 6645 -9 4 1071 28 0 0 0 chr12 63779785 63779813 -57477717 + AT_rich Low_complexity Low_complexity 1 28 0 4 1071 2701 142 39 56 chr12 63779814 63780330 -57477200 - Lx3C LINE L1 0 6976 6470 4 1071 356 175 12 0 chr12 63780345 63780425 -57477105 + L1_Mm LINE L1 3838 3918 -1965 4 1071 232 170 0 0 chr12 63780614 63780661 -57476869 + A-rich Low_complexity Low_complexity 1 47 0 4 1071 378 42 0 0 chr12 63781282 63781330 -57476200 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1071 209 227 0 0 chr12 63781393 63781437 -57476093 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1071 24 0 0 0 chr12 63781589 63781613 -57475917 + AT_rich Low_complexity Low_complexity 1 24 0 4 1071 433 309 21 49 chr12 63781796 63781939 -57475591 + B4 SINE B4 144 282 -10 4 1071 25 31 0 0 chr12 63782233 63782265 -57475265 + AT_rich Low_complexity Low_complexity 1 32 0 4 1071 6919 56 2 0 chr12 63782326 63783204 -57474326 + L1Md_F3 LINE L1 4707 5586 -297 4 1071 8135 43 5 0 chr12 63783204 63784195 -57473335 + L1Md_F3 LINE L1 5587 6582 -2 4 1071 677 225 0 8 chr12 63784550 63784680 -57472850 + B3 SINE B2 2 130 -86 4 1071 29 0 0 0 chr12 63784704 63784733 -57472797 + AT_rich Low_complexity Low_complexity 1 29 0 4 1071 1470 54 5 0 chr12 63784741 63784925 -57472605 + B2_Mm1t SINE B2 2 186 -7 4 1071 3276 169 11 5 chr12 63785492 63786047 -57471483 + Lx4A LINE L1 6429 6986 -72 4 1071 1625 258 97 12 chr12 63786253 63786684 -57470846 + Lx6 LINE L1 6783 7250 -210 4 1071 267 79 0 0 chr12 63786691 63786729 -57470801 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1071 564 15 0 0 chr12 63786730 63786795 -57470735 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 4 1071 2981 168 30 34 chr12 63787016 63787578 -57469952 - Lx2 LINE L1 -16 6981 6422 4 1071 1176 197 144 78 chr12 63787728 63788213 -57469317 + L1_Mur3 LINE L1 3205 3721 -2159 4 1071 1102 283 26 7 chr12 63788228 63788537 -57468993 + Lx6 LINE L1 7136 7450 -10 4 1071 218 222 76 45 chr12 63789991 63790057 -57467473 - PB1D10 SINE Alu -18 99 32 4 1071 1649 300 27 32 chr12 63790229 63790804 -57466726 - Lx5 LINE L1 -62 6988 6455 4 1071 252 0 0 0 chr12 63790804 63790832 -57466698 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1071 848 296 9 68 chr12 63790832 63790988 -57466542 - Lx5 LINE L1 -722 6738 6583 4 1071 21 0 0 0 chr12 63791641 63791662 -57465868 + AT_rich Low_complexity Low_complexity 1 21 0 4 1071 743 357 60 13 chr12 63791689 63792004 -57465526 - ORR1E LTR MaLR 0 359 30 4 1071 183 42 0 0 chr12 63792830 63792854 -57464676 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1071 257 315 61 5 chr12 63793134 63793297 -57464233 - L1MA4A LINE L1 -284 6016 5847 4 1071 350 316 105 25 chr12 63793342 63793863 -57463667 - L1MA4A LINE L1 -834 5466 4913 4 1071 29 0 0 0 chr12 63795102 63795131 -57462399 + AT_rich Low_complexity Low_complexity 1 29 0 4 1071 22 0 0 0 chr12 63795366 63795388 -57462142 + AT_rich Low_complexity Low_complexity 1 22 0 4 1071 3966 68 2 41 chr12 63795399 63795955 -57461575 + L1Md_F2 LINE L1 6045 6578 -4 4 1071 588 29 0 0 chr12 63796335 63796405 -57461125 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1071 267 360 76 51 chr12 63796405 63796555 -57460975 + MER2B DNA MER2_type 167 320 -16 4 1071 1176 206 40 47 chr12 63796555 63796748 -57460782 - RMER16 LTR ERVK -1 532 343 4 1071 1032 78 124 12 chr12 63796748 63796917 -57460613 + B2_Mm2 SINE B2 1 188 -7 4 1071 1176 206 40 47 chr12 63796917 63797044 -57460486 - RMER16 LTR ERVK -191 342 214 4 1071 264 105 0 0 chr12 63797044 63797082 -57460448 - ETnERV2-int LTR ERVK -4898 2508 2471 4 1071 1948 208 45 19 chr12 63797174 63797636 -57459894 - Lx9 LINE L1 -153 7491 7018 4 1071 225 198 75 21 chr12 63797962 63798055 -57459475 - Lx9 LINE L1 -31 7613 7516 4 1071 479 208 29 81 chr12 63798102 63798238 -57459292 - RMER16 LTR ERVK -404 129 1 4 1071 207 0 0 0 chr12 63799248 63799271 -57458259 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1071 195 42 0 0 chr12 63799294 63799318 -57458212 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1071 273 29 0 0 chr12 63799354 63799388 -57458142 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1071 2907 78 31 3 chr12 63799478 63799863 -57457667 - MTA_Mm LTR MaLR 0 396 1 4 1071 251 333 0 11 chr12 63801600 63801688 -57455842 - B2_Mm2 SINE B2 -107 88 2 4 1071 1733 218 13 43 chr12 63803355 63803749 -57453781 + RLTR41 LTR ERV1 65 446 0 4 1071 447 52 0 0 chr12 63803894 63803952 -57453578 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1071 1106 39 0 110 chr12 63803953 63804126 -57453404 - L1_Mus2 LINE L1 -7 6559 6406 4 1071 209 349 8 8 chr12 63804808 63804935 -57452595 + CT-rich Low_complexity Low_complexity 2 128 0 4 1071 28 0 0 0 chr12 63805386 63805414 -57452116 + AT_rich Low_complexity Low_complexity 1 28 0 4 1071 23 33 0 0 chr12 63805535 63805565 -57451965 + AT_rich Low_complexity Low_complexity 1 30 0 4 1071 1080 80 0 0 chr12 63807724 63807862 -57449668 - B1_Mus1 SINE Alu -7 141 4 4 1071 252 0 0 0 chr12 63807862 63807890 -57449640 + (TTA)n Simple_repeat Simple_repeat 1 28 0 4 1071 4174 168 53 30 chr12 63807912 63808774 -57448756 + RLTR13D6 LTR ERVK 1 882 -20 4 1071 5686 124 13 77 chr12 63808779 63809846 -57447684 - Lx3C LINE L1 -14 6962 5964 4 1071 2015 123 13 6 chr12 63810067 63810378 -57447152 - Lx2 LINE L1 -530 6467 6155 4 1071 612 176 0 8 chr12 63810378 63810504 -57447026 + Lx2 LINE L1 6869 6993 -4 4 1071 25 0 0 0 chr12 63811716 63811741 -57445789 + AT_rich Low_complexity Low_complexity 1 25 0 4 1071 28 79 0 0 chr12 63811937 63812000 -57445530 + AT_rich Low_complexity Low_complexity 1 63 0 4 1071 28 0 0 0 chr12 63812060 63812088 -57445442 + AT_rich Low_complexity Low_complexity 1 28 0 4 1071 26 30 0 0 chr12 63812557 63812590 -57444940 + AT_rich Low_complexity Low_complexity 1 33 0 4 1071 299 287 118 0 chr12 63813609 63813745 -57443785 + Charlie2b DNA MER1_type 1833 1984 -798 4 1071 23 33 0 0 chr12 63813828 63813858 -57443672 + AT_rich Low_complexity Low_complexity 1 30 0 4 1071 1618 267 32 15 chr12 63816827 63817295 -57440235 - Lx7 LINE L1 -505 7191 6716 4 1071 1252 165 0 22 chr12 63817295 63817518 -57440012 + URR1B DNA MER1_type 1 218 -7 4 1071 258 32 0 0 chr12 63817624 63817655 -57439875 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 4 1071 1549 47 0 5 chr12 63817706 63817897 -57439633 - B2_Mm2 SINE B2 -2 193 4 4 1071 228 35 0 0 chr12 63818052 63818081 -57439449 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 4 1071 23 0 0 0 chr12 63819355 63819378 -57438152 + AT_rich Low_complexity Low_complexity 1 23 0 4 1071 1043 307 30 35 chr12 63819848 63820216 -57437314 + ORR1D2 LTR MaLR 1 366 -4 4 1071 312 152 0 0 chr12 63820470 63820516 -57437014 + Lx9 LINE L1 6875 6920 -724 4 1071 318 237 66 0 chr12 63820597 63820673 -57436857 + Lx9 LINE L1 7072 7152 -492 4 1071 343 336 16 25 chr12 63820724 63820846 -57436684 - B1_Mm SINE Alu -16 131 11 4 1071 247 278 23 122 chr12 63820736 63820867 -57436663 - MT2B LTR ERVL -329 272 155 4 1071 481 307 67 17 chr12 63821229 63821408 -57436122 + RMER15 LTR ERVL 370 557 -18 4 1071 864 202 141 0 chr12 63821528 63821726 -57435804 - URR1A DNA MER1_type 0 226 1 5 1071 345 276 14 53 chr12 63823004 63823132 -57434398 - MLT1A1 LTR MaLR 0 505 313 5 1071 248 167 109 18 chr12 63823269 63823324 -57434206 - MLT1A1 LTR MaLR -318 90 31 5 1071 626 68 11 0 chr12 63823617 63823705 -57433825 + (TTCTCC)n Simple_repeat Simple_repeat 3 91 0 5 1071 1581 8 0 4 chr12 63823707 63823977 -57433553 + (TTC)n Simple_repeat Simple_repeat 1 269 0 5 1071 650 275 183 16 chr12 63823981 63824232 -57433298 + MTD LTR MaLR 127 419 0 5 1071 516 100 0 0 chr12 63824435 63824515 -57433015 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1071 486 257 9 9 chr12 63824525 63824635 -57432895 - B4A SINE B4 -24 268 159 5 1071 286 320 21 0 chr12 63824670 63824767 -57432763 + Lx8 LINE L1 6624 6722 -751 5 1071 204 135 0 0 chr12 63824788 63824825 -57432705 + (TTG)n Simple_repeat Simple_repeat 3 39 0 5 1071 744 320 89 61 chr12 63824927 63825469 -57432061 + Lx8 LINE L1 6804 7360 -113 5 1071 220 158 35 0 chr12 63825470 63825527 -57432003 + A-rich Low_complexity Low_complexity 2 60 0 5 1071 378 269 11 7 chr12 63826423 63826519 -57431011 - B3A SINE B2 -96 99 2 5 1071 1366 182 45 17 chr12 63827381 63827734 -57429796 - RMER6C LTR ERVK -2 688 324 5 1071 225 228 0 81 chr12 63827722 63827784 -57429746 - MT2B LTR ERVL -391 210 154 5 1071 424 184 0 0 chr12 63827800 63827876 -57429654 + tRNA-Lys-AAG tRNA tRNA 1 76 0 5 1071 2460 97 96 28 chr12 63827879 63828273 -57429257 - BGLII LTR ERVK 0 421 1 5 1071 1223 208 133 10 chr12 63828273 63828541 -57428989 - MYSERV16_I-int LTR ERVK 0 2326 2015 5 1071 800 49 49 0 chr12 63828541 63828663 -57428867 - L1Md_T LINE L1 -1 6581 6454 5 1071 1223 208 133 10 chr12 63828663 63828807 -57428723 - MYSERV16_I-int LTR ERVK -312 2014 1864 5 1071 292 262 119 0 chr12 63828807 63828891 -57428639 - B1_Mm SINE Alu -38 109 16 5 1071 402 136 35 47 chr12 63828818 63828903 -57428627 - MT2B LTR ERVL -348 253 170 5 1071 506 159 31 171 chr12 63828874 63829003 -57428527 - RMER6C LTR ERVK -579 111 1 5 1071 302 61 14 43 chr12 63829195 63829264 -57428266 + (TTTTG)n Simple_repeat Simple_repeat 2 68 0 5 1071 937 148 6 0 chr12 63829492 63829654 -57427876 + L1_Mm LINE L1 4292 4454 -1429 5 1071 6233 55 1 4 chr12 63830946 63831732 -57425798 - L1Md_F2 LINE L1 -1 6581 5798 5 133 4161 41 0 0 chr12 63831732 63832224 -57425306 - L1Md_F2 LINE L1 -196 6386 5895 5 1072 580 254 0 8 chr12 63832224 63832347 -57425183 + B1_Mus1 SINE Alu 27 148 0 5 1072 258 206 0 0 chr12 63832347 63832415 -57425115 + (CAT)n Simple_repeat Simple_repeat 2 69 0 5 1072 13806 156 62 3 chr12 63832968 63835201 -57422329 - L1VL1 LINE L1 -1927 3956 1589 5 1072 243 0 0 0 chr12 63835201 63835228 -57422302 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1072 13806 147 79 27 chr12 63835228 63836342 -57421188 - L1VL1 LINE L1 -4295 1588 411 5 1072 32 67 0 0 chr12 63836408 63836468 -57421062 + AT_rich Low_complexity Low_complexity 1 60 0 5 1072 4371 66 4 0 chr12 63836790 63837351 -57420179 - L1Md_T LINE L1 -276 6306 5744 5 1072 2263 50 0 0 chr12 63837351 63837634 -57419896 + L1Md_A LINE L1 6300 6582 0 5 1072 1378 260 15 37 chr12 63837792 63838119 -57419411 + ORR1B2 LTR MaLR 5 324 -43 5 1072 3371 131 4 4 chr12 63838119 63838665 -57418865 - Lx3C LINE L1 -1017 4860 4315 5 1072 4789 171 43 35 chr12 63838659 63839518 -57418012 + Lx3C LINE L1 4906 5787 -99 5 1072 1114 96 0 0 chr12 63839518 63839664 -57417866 + B1_Mus2 SINE Alu 2 147 0 5 1072 4789 152 61 66 chr12 63839664 63839924 -57417606 + Lx3C LINE L1 5785 6056 -920 5 1072 2646 202 38 7 chr12 63839929 63840482 -57417048 + Lx3C LINE L1 6396 6965 -11 5 1072 320 64 0 21 chr12 63840483 63840531 -57416999 + (TAA)n Simple_repeat Simple_repeat 1 47 0 5 1072 234 211 0 37 chr12 63840531 63840585 -57416945 + ORR1B2 LTR MaLR 316 367 0 5 1072 538 312 71 90 chr12 63840781 63840942 -57416588 + L1ME1 LINE L1 5688 5859 -320 5 1072 279 0 0 0 chr12 63840942 63840973 -57416557 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1072 538 314 106 76 chr12 63840973 63841494 -57416036 + L1ME1 LINE L1 5860 6435 -1560 5 1072 6665 114 11 1 chr12 63842271 63843253 -57414277 - L1_Mus3 LINE L1 -3 6635 5644 5 1072 358 308 9 0 chr12 63843276 63843383 -57414147 + PB1D10 SINE Alu 2 109 -8 5 1072 919 101 0 0 chr12 63843457 63843586 -57413944 + Lx3_Mus LINE L1 6435 6563 -446 5 1072 2911 95 2 0 chr12 63843593 63843994 -57413536 + L1_Mus1 LINE L1 6166 6567 0 5 1072 2972 97 36 9 chr12 63844067 63844513 -57413017 + Lx3_Mus LINE L1 6552 7009 0 5 1072 216 135 0 0 chr12 63844559 63844596 -57412934 + (TATG)n Simple_repeat Simple_repeat 2 38 0 5 1072 20902 107 11 57 chr12 63844925 63849219 -57408311 + L1_Mus1 LINE L1 2494 6567 0 5 1072 213 322 0 11 chr12 63849224 63849312 -57408218 + A-rich Low_complexity Low_complexity 1 87 0 5 1072 312 355 107 0 chr12 63849518 63849715 -57407815 - Lx8 LINE L1 -862 6611 6394 5 1072 243 284 0 26 chr12 63849898 63849974 -57407556 - Lx8 LINE L1 -1091 6382 6309 5 1072 522 319 0 12 chr12 63850215 63850377 -57407153 + Lx8 LINE L1 6793 6952 -521 5 1072 202 289 0 0 chr12 63850740 63850792 -57406738 + A-rich Low_complexity Low_complexity 2 53 0 5 1072 599 308 49 15 chr12 63850794 63850998 -57406532 + B3 SINE B2 6 216 0 5 1072 198 0 0 0 chr12 63851072 63851094 -57406436 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1072 350 262 281 0 chr12 63851240 63851404 -57406126 - B3 SINE B2 -3 213 4 5 1072 23 0 0 0 chr12 63851411 63851434 -57406096 + AT_rich Low_complexity Low_complexity 1 23 0 5 1072 221 175 0 0 chr12 63851802 63851842 -57405688 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 1072 827 202 25 40 chr12 63852046 63852247 -57405283 + L1_Rod LINE L1 5343 5540 -307 5 1072 245 297 136 19 chr12 63852318 63852421 -57405109 - PB1D9 SINE Alu 0 120 6 5 1072 259 373 98 34 chr12 63852541 63852866 -57404664 - MLT1J-int LTR MaLR -959 428 83 5 1072 29 0 0 0 chr12 63853172 63853201 -57404329 + AT_rich Low_complexity Low_complexity 1 29 0 5 1072 27 73 0 0 chr12 63853283 63853338 -57404192 + AT_rich Low_complexity Low_complexity 1 55 0 5 1072 1186 178 5 0 chr12 63853376 63853589 -57403941 - MTC LTR MaLR -1 420 207 5 1072 2702 165 109 73 chr12 63853608 63853812 -57403718 - RLTR25A LTR ERVK 0 1103 898 5 1072 707 0 12 0 chr12 63853812 63853895 -57403635 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1072 2702 165 109 73 chr12 63853895 63854349 -57403181 - RLTR25A LTR ERVK -206 897 422 5 1072 237 222 79 0 chr12 63854362 63854425 -57403105 - MTC LTR MaLR -324 97 30 5 1072 216 0 0 0 chr12 63855871 63855895 -57401635 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 1072 215 191 0 31 chr12 63856048 63856113 -57401417 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1072 1182 142 20 20 chr12 63856216 63856417 -57401113 - Lx3B LINE L1 -65 6908 6708 5 1072 21 57 0 0 chr12 63857027 63857062 -57400468 + AT_rich Low_complexity Low_complexity 1 35 0 5 1072 892 267 79 9 chr12 63857521 63857807 -57399723 + ORR1B1 LTR MaLR 1 341 -53 5 1072 1196 90 5 21 chr12 63857807 63857999 -57399531 - L1Md_F2 LINE L1 -3 6579 6391 5 1072 892 248 62 0 chr12 63857999 63858051 -57399479 + ORR1B1 LTR MaLR 342 393 -1 5 1072 780 165 20 174 chr12 63858456 63858522 -57399008 - Lx7 LINE L1 -166 7530 7467 5 1072 369 0 0 0 chr12 63858522 63858563 -57398967 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1072 780 165 20 174 chr12 63858563 63858790 -57398740 - Lx7 LINE L1 -230 7466 7282 5 1072 1251 264 44 16 chr12 63859358 63859673 -57397857 + Lx5 LINE L1 6069 6392 -658 5 1072 794 290 85 51 chr12 63859673 63860025 -57397505 + RLTR12A LTR ERVK 189 552 -16 5 1072 407 307 78 60 chr12 63860049 63860333 -57397197 + Lx8 LINE L1 7178 7466 -7 5 1072 533 314 175 19 chr12 63861042 63861351 -57396179 + ORR1E LTR MaLR 1 357 -2 5 1072 407 341 16 0 chr12 63863027 63863153 -57394377 + RSINE1 SINE B4 2 129 -36 5 1072 192 77 0 0 chr12 63863343 63863369 -57394161 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 5 1072 422 313 75 14 chr12 63863377 63863591 -57393939 + RMER15 LTR ERVL 239 465 -110 5 1072 1099 95 0 0 chr12 63863591 63863739 -57393791 + B1_Mus1 SINE Alu 1 148 0 5 1072 330 84 27 27 chr12 63863739 63863812 -57393718 + (CAAAAA)n Simple_repeat Simple_repeat 3 75 0 5 1072 226 294 63 81 chr12 63863812 63863923 -57393607 + RMER15 LTR ERVL 451 559 -16 5 1072 4760 105 58 6 chr12 63864657 63865367 -57392163 - Lx3B LINE L1 -3 6970 6224 5 1072 695 133 0 40 chr12 63865367 63865492 -57392038 + Lx3B LINE L1 6099 6218 -755 5 1072 258 180 33 0 chr12 63865623 63865684 -57391846 + Lx9 LINE L1 7394 7456 -188 5 1072 1153 62 0 0 chr12 63865684 63865830 -57391700 + B1_Mus2 SINE Alu 2 147 0 5 1072 384 71 0 0 chr12 63865832 63865888 -57391642 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 5 1072 224 279 0 23 chr12 63866006 63866066 -57391464 + A-rich Low_complexity Low_complexity 3 61 0 5 1072 1503 162 47 4 chr12 63866066 63866345 -57391185 + Lx2 LINE L1 6707 6997 0 5 1072 224 279 0 23 chr12 63866345 63866372 -57391158 + A-rich Low_complexity Low_complexity 62 88 0 5 1072 27 92 0 0 chr12 63866683 63866759 -57390771 + AT_rich Low_complexity Low_complexity 1 76 0 5 1072 477 0 0 0 chr12 63867019 63867072 -57390458 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1072 285 274 0 0 chr12 63867441 63867547 -57389983 + CT-rich Low_complexity Low_complexity 5 110 0 5 1072 689 346 96 39 chr12 63868075 63868619 -57388911 - Lx9 LINE L1 -171 7473 6899 5 1072 629 242 96 18 chr12 63868623 63868842 -57388688 + Lx7 LINE L1 7461 7696 0 5 1072 630 326 24 2 chr12 63868884 63869166 -57388364 + L1_Mur3 LINE L1 5453 5736 -141 5 1072 234 169 0 0 chr12 63869496 63869561 -57387969 + A-rich Low_complexity Low_complexity 1 65 0 5 1072 30 0 0 0 chr12 63869797 63869827 -57387703 + AT_rich Low_complexity Low_complexity 1 30 0 5 1072 381 299 87 68 chr12 63870765 63870984 -57386546 + B4A SINE B4 1 223 -69 5 1072 303 48 0 0 chr12 63871277 63871319 -57386211 - L1Md_F3 LINE L1 -768 5816 5775 5 1072 549 0 0 0 chr12 63871420 63871481 -57386049 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1072 21 57 0 0 chr12 63872468 63872503 -57385027 + AT_rich Low_complexity Low_complexity 1 35 0 5 1072 1060 72 7 0 chr12 63872808 63872960 -57384570 + L1Md_F2 LINE L1 6429 6581 -1 5 1072 811 315 83 31 chr12 63873247 63873571 -57383959 - Lx7 LINE L1 -1075 6621 6281 5 1072 488 236 47 39 chr12 63873566 63873694 -57383836 + Lx7 LINE L1 6619 6747 -949 5 1072 565 85 0 26 chr12 63874004 63874099 -57383431 + L1_Mm LINE L1 5544 5636 -247 5 1072 608 233 0 24 chr12 63874318 63874441 -57383089 - B1_Mm SINE Alu -27 120 1 5 1072 510 18 0 0 chr12 63874662 63874719 -57382811 + L1Md_F2 LINE L1 5530 5586 -297 6 1072 7943 53 4 3 chr12 63874719 63875713 -57381817 + L1Md_F2 LINE L1 5587 6581 -1 6 1072 300 218 0 49 chr12 63875713 63875737 -57381793 + L1M3 LINE L1 5616 5636 -547 6 1072 23 33 0 0 chr12 63876167 63876197 -57381333 + AT_rich Low_complexity Low_complexity 1 30 0 6 1072 244 219 16 0 chr12 63876199 63876263 -57381267 + L1MA5 LINE L1 5868 5932 -368 6 1072 24 85 0 0 chr12 63876543 63876602 -57380928 + AT_rich Low_complexity Low_complexity 1 59 0 6 1072 21 57 0 0 chr12 63876835 63876870 -57380660 + AT_rich Low_complexity Low_complexity 1 35 0 6 1072 753 157 52 0 chr12 63876916 63877050 -57380480 + Lx4A LINE L1 6460 6600 -458 6 1072 659 192 8 8 chr12 63877046 63877167 -57380363 + Lx4A LINE L1 6864 6984 -74 6 1072 198 103 0 0 chr12 63877869 63877898 -57379632 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 6 1072 23 78 0 0 chr12 63879473 63879524 -57378006 + AT_rich Low_complexity Low_complexity 1 51 0 6 1072 30 0 0 0 chr12 63880085 63880115 -57377415 + AT_rich Low_complexity Low_complexity 1 30 0 6 1072 2184 188 31 29 chr12 63881410 63881925 -57375605 - Lx4B LINE L1 -3 7055 6540 6 1072 1464 60 0 0 chr12 63882232 63882515 -57375015 + (TTC)n Simple_repeat Simple_repeat 1 283 0 6 1072 26 74 0 0 chr12 63882740 63882794 -57374736 + AT_rich Low_complexity Low_complexity 1 54 0 6 1072 503 354 0 15 chr12 63882871 63883072 -57374458 + Lx7 LINE L1 5594 5791 -1905 6 1072 1090 137 0 0 chr12 63883078 63883239 -57374291 + B2_Mm2 SINE B2 1 161 -34 6 1072 231 61 0 0 chr12 63883239 63883272 -57374258 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 6 1072 756 343 159 63 chr12 63883278 63884646 -57372884 + Lx8 LINE L1 5780 7278 -195 6 1072 699 290 43 19 chr12 63885926 63886137 -57371393 + B3 SINE B2 1 216 0 6 1072 676 103 8 8 chr12 63886287 63886404 -57371126 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 6 1072 588 173 17 23 chr12 63886377 63886549 -57370981 + CT-rich Low_complexity Low_complexity 3 173 0 6 1072 419 254 26 51 chr12 63886549 63886744 -57370786 - Lx7 LINE L1 0 7696 7507 6 1072 28794 136 18 20 chr12 63886882 63889359 -57368171 + L1Md_F LINE L1 564 3016 -2867 6 1072 4371 68 9 2 chr12 63889359 63889915 -57367615 + LTRIS2 LTR ERV1 5 564 0 6 1072 28794 118 8 14 chr12 63889915 63891668 -57365862 + L1Md_F LINE L1 3017 4730 -1153 6 1072 347 41 0 20 chr12 63891668 63891718 -57365812 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1072 28794 118 8 14 chr12 63891718 63892754 -57364776 + L1Md_F LINE L1 4731 5767 -116 6 1072 473 62 0 0 chr12 63892752 63892816 -57364714 - L1_Mm LINE L1 -557 5326 5263 6 1072 5093 46 2 6 chr12 63892816 63893447 -57364083 + L1Md_F3 LINE L1 5955 6582 -2 6 1072 3227 258 61 5 chr12 63893448 63894286 -57363244 - Lx7 LINE L1 -351 7345 6461 6 1072 1054 281 121 30 chr12 63894342 63894571 -57362959 + MTD LTR MaLR 12 268 -151 6 1072 1995 95 15 62 chr12 63894571 63894909 -57362621 - RLTRETN_Mm LTR ERVK 0 322 1 6 1072 1054 281 121 30 chr12 63894909 63895042 -57362488 + MTD LTR MaLR 269 407 -12 6 1072 30 0 0 0 chr12 63895102 63895132 -57362398 + AT_rich Low_complexity Low_complexity 1 30 0 6 1072 265 250 15 0 chr12 63895589 63895657 -57361873 + L1MB1 LINE L1 5493 5561 -622 6 1072 588 301 104 24 chr12 63895846 63896220 -57361310 + L1MB1 LINE L1 5603 6006 -162 6 1072 240 35 0 0 chr12 63896340 63896369 -57361161 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1072 343 304 82 5 chr12 63896540 63896748 -57360782 - L1M4b LINE L1 -1807 5199 4976 6 1072 333 295 142 37 chr12 63897013 63897231 -57360299 - L1M4b LINE L1 -5863 1471 1231 6 1072 4289 224 48 16 chr12 63897546 63898578 -57358952 - Lx2B LINE L1 -4 6996 5932 6 1072 5007 179 29 10 chr12 63898571 63899542 -57357988 - L1_Mur1 LINE L1 -172 5714 4726 6 1072 672 64 0 0 chr12 63899646 63899740 -57357790 + (TC)n Simple_repeat Simple_repeat 1 94 0 6 1072 2203 159 3 0 chr12 63899742 63900107 -57357423 - Lx3A LINE L1 -2 6979 6614 6 1072 375 305 42 14 chr12 63900125 63900268 -57357262 - Lx8 LINE L1 -777 6696 6550 6 1072 5957 190 26 27 chr12 63900316 63901522 -57356008 - Lx2B LINE L1 -1085 5965 4733 6 1072 665 12 36 0 chr12 63901522 63901606 -57355924 + (TTTTC)n Simple_repeat Simple_repeat 4 90 0 6 1072 5957 203 40 14 chr12 63901606 63901832 -57355698 - Lx2B LINE L1 -1145 4732 4502 6 1072 24 53 0 0 chr12 63902331 63902369 -57355161 + AT_rich Low_complexity Low_complexity 1 38 0 6 1072 230 261 21 21 chr12 63902514 63902608 -57354922 + (TAAA)n Simple_repeat Simple_repeat 4 97 0 6 1072 252 0 0 0 chr12 63902674 63902702 -57354828 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 6 1072 301 324 95 14 chr12 63903734 63903881 -57353649 + MLT1G3 LTR MaLR 45 203 -392 6 1072 23 33 0 0 chr12 63904353 63904383 -57353147 + AT_rich Low_complexity Low_complexity 1 30 0 6 1072 290 204 19 0 chr12 63904560 63904614 -57352916 - ID_B1 SINE B4 -20 204 150 6 1072 2338 240 19 19 chr12 63904698 63905276 -57352254 + Lx9 LINE L1 6718 7295 -349 6 1072 2110 48 69 14 chr12 63905335 63905612 -57351918 + L1_Mus1 LINE L1 6274 6565 -2 6 1072 4961 137 25 88 chr12 63906304 63907281 -57350249 - Lx3A LINE L1 -1 6980 6066 6 1072 272 203 137 55 chr12 63907324 63907397 -57350133 - B1_Mur3 SINE Alu -1 148 70 6 1072 291 167 0 0 chr12 63907894 63907960 -57349570 + GA-rich Low_complexity Low_complexity 1 66 0 6 1072 1194 134 0 11 chr12 63908176 63908364 -57349166 + B2_Mm2 SINE B2 2 187 -8 6 1072 287 397 32 16 chr12 63908650 63908773 -57348757 + B1F SINE Alu 22 146 -3 6 1072 208 161 32 0 chr12 63908774 63908836 -57348694 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 6 1072 21 57 0 0 chr12 63908879 63908914 -57348616 + AT_rich Low_complexity Low_complexity 1 35 0 6 1072 24 53 0 0 chr12 63909222 63909260 -57348270 + AT_rich Low_complexity Low_complexity 1 38 0 6 1072 21 71 0 0 chr12 63909450 63909492 -57348038 + AT_rich Low_complexity Low_complexity 1 42 0 6 1072 21 36 0 0 chr12 63909651 63909679 -57347851 + AT_rich Low_complexity Low_complexity 1 28 0 6 1072 473 193 21 14 chr12 63909762 63909904 -57347626 + Lx9 LINE L1 7501 7643 -1 6 1072 209 344 122 11 chr12 63910391 63910579 -57346951 + MIR SINE MIR 13 221 -41 6 1072 253 316 15 0 chr12 63911137 63911273 -57346257 - L1M2 LINE L1 -1629 4514 4377 6 1072 681 290 49 9 chr12 63911355 63911578 -57345952 + Lx9 LINE L1 6711 6942 -702 6 1072 475 267 9 28 chr12 63911588 63911696 -57345834 - B3 SINE B2 -102 114 9 6 1072 21 36 0 0 chr12 63911736 63911764 -57345766 + AT_rich Low_complexity Low_complexity 1 28 0 6 1072 627 14 0 0 chr12 63912085 63912157 -57345373 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 6 1072 1017 142 0 0 chr12 63912157 63912326 -57345204 + (TTC)n Simple_repeat Simple_repeat 1 169 0 6 1072 393 70 0 40 chr12 63912761 63912794 -57344736 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1072 444 19 0 0 chr12 63912794 63912847 -57344683 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1072 393 70 0 40 chr12 63912847 63912888 -57344642 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1072 23477 175 23 4 chr12 63915388 63916816 -57340714 + Lx3C LINE L1 865 2313 -3573 6 1072 270 0 0 0 chr12 63916816 63916846 -57340684 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1072 23477 176 26 10 chr12 63916846 63921419 -57336111 + Lx3C LINE L1 2314 6972 -4 6 1072 2981 68 5 5 chr12 63921905 63922301 -57335229 - MTA_Mm LTR MaLR 0 396 1 6 1072 261 0 0 0 chr12 63922919 63922948 -57334582 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1072 298 271 145 36 chr12 63922953 63923091 -57334439 - LTR41 LTR ERVL -607 161 9 6 1072 21 89 0 0 chr12 63923305 63923361 -57334169 + AT_rich Low_complexity Low_complexity 1 56 0 6 1072 420 231 45 23 chr12 63923492 63923625 -57333905 - Lx7 LINE L1 -2 7694 7559 6 1072 1422 149 17 8 chr12 63923695 63923959 -57333571 - L1_Mur2 LINE L1 -2104 3743 3472 6 1072 36938 38 16 17 chr12 63923961 63925609 -57331921 - L1Md_T LINE L1 0 6582 4922 6 1072 229 183 46 77 chr12 63925609 63925674 -57331856 + RMER20A LTR ERVK 186 248 -268 6 1072 36938 38 16 17 chr12 63925674 63930135 -57327395 - L1Md_T LINE L1 0 4921 423 6 1072 186 128 0 0 chr12 63930144 63930183 -57327347 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1072 3249 104 6 4 chr12 63930210 63930227 -57327303 - MusHAL1 LINE L1 -418 2294 2278 6 1072 1026 90 14 0 chr12 63930227 63930372 -57327158 - B1_Mus1 SINE Alu -1 147 1 6 1072 3249 104 6 4 chr12 63930372 63930867 -57326663 - MusHAL1 LINE L1 -435 2277 1781 6 1072 332 59 20 0 chr12 63931950 63932001 -57325529 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1072 291 171 0 0 chr12 63932170 63932246 -57325284 + A-rich Low_complexity Low_complexity 1 76 0 6 1072 258 56 0 0 chr12 63932770 63932806 -57324724 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 6 1072 1120 83 0 7 chr12 63932806 63932952 -57324578 - B1_Mus1 SINE Alu -2 146 2 6 1072 1516 274 42 35 chr12 63933221 63933740 -57323790 - Lx6 LINE L1 -1214 6246 5724 6 1072 1759 304 87 32 chr12 63933743 63933886 -57323644 + Lx6 LINE L1 6584 6735 -725 6 1072 1529 190 0 89 chr12 63933886 63934245 -57323285 - ORR1A4 LTR MaLR 0 329 3 6 1072 1759 304 87 32 chr12 63934245 63934903 -57322627 + Lx6 LINE L1 6736 7429 -31 6 1072 191 36 36 0 chr12 63934907 63934935 -57322595 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1072 254 287 97 71 chr12 63935726 63935880 -57321650 + LTR40c LTR ERVL 295 452 -13 6 1072 36 40 0 0 chr12 63935966 63936016 -57321514 + AT_rich Low_complexity Low_complexity 1 50 0 6 1072 293 301 68 112 chr12 63936063 63936224 -57321306 - RSINE1 SINE B4 0 165 12 6 1072 1664 211 4 81 chr12 63936369 63936590 -57320940 + RMER6A LTR ERVK 173 372 -384 6 1072 641 13 13 0 chr12 63936590 63936668 -57320862 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 1072 1664 211 4 81 chr12 63936668 63936720 -57320810 + RMER6A LTR ERVK 373 415 -341 6 1072 3550 87 2 8 chr12 63936720 63937198 -57320332 + MT2C_Mm LTR ERVL 1 475 0 6 1072 1664 211 4 81 chr12 63937198 63937419 -57320111 + RMER6A LTR ERVK 416 630 -126 6 1072 822 282 120 38 chr12 63937420 63937811 -57319719 - RLTR23 LTR ERV1 0 430 8 6 1072 619 213 31 0 chr12 63937831 63937958 -57319572 + RMER6A LTR ERVK 626 756 0 6 1072 24 67 0 0 chr12 63938332 63938377 -57319153 + AT_rich Low_complexity Low_complexity 1 45 0 6 1072 2082 224 54 10 chr12 63938920 63939402 -57318128 + RMER20A LTR ERVK 14 516 0 6 1072 263 268 0 0 chr12 63939492 63939548 -57317982 - RMER30 DNA MER1_type -145 57 2 6 1072 28 0 0 0 chr12 63939610 63939638 -57317892 + AT_rich Low_complexity Low_complexity 1 28 0 6 1072 21 36 0 0 chr12 63940127 63940155 -57317375 + AT_rich Low_complexity Low_complexity 1 28 0 6 1072 370 224 27 20 chr12 63940196 63940346 -57317184 + (TA)n Simple_repeat Simple_repeat 2 152 0 7 1072 321 118 12 50 chr12 63940433 63940513 -57317017 + (TATG)n Simple_repeat Simple_repeat 4 80 0 7 1072 212 283 0 0 chr12 63940514 63940574 -57316956 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1072 493 270 8 0 chr12 63940602 63940728 -57316802 + Lx8 LINE L1 6793 6919 -554 7 1072 2333 102 58 65 chr12 63941463 63941893 -57315637 + Lx2 LINE L1 6571 6997 0 7 1072 34 65 0 0 chr12 63942245 63942307 -57315223 + AT_rich Low_complexity Low_complexity 1 62 0 7 1072 1065 64 0 13 chr12 63942474 63942632 -57314898 + L1Md_F2 LINE L1 6427 6582 0 7 1072 21 36 0 0 chr12 63942644 63942672 -57314858 + AT_rich Low_complexity Low_complexity 1 28 0 7 1072 227 103 0 25 chr12 63942873 63942913 -57314617 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1072 269 333 48 78 chr12 63943140 63943306 -57314224 + RLTR8 LTR ERVK 205 365 0 7 1072 273 188 53 7 chr12 63943318 63943468 -57314062 + (TA)n Simple_repeat Simple_repeat 2 158 0 7 1072 24 53 0 0 chr12 63943694 63943732 -57313798 + AT_rich Low_complexity Low_complexity 1 38 0 7 1072 3021 18 9 0 chr12 63943736 63944079 -57313451 - ORR1A0 LTR MaLR 0 346 1 7 1072 33 90 0 0 chr12 63944153 63944242 -57313288 + AT_rich Low_complexity Low_complexity 1 89 0 7 1072 985 90 8 0 chr12 63944827 63944961 -57312569 - B1_Mus1 SINE Alu -9 139 5 7 1072 4473 151 67 0 chr12 63944972 63945733 -57311797 - Lx2B LINE L1 -1 6999 6188 7 1072 2600 181 32 44 chr12 63945740 63946266 -57311264 + RMER4B LTR ERVK 57 576 -9 7 1072 2536 144 70 47 chr12 63946377 63946564 -57310966 - RLTR19 LTR ERVK 0 499 325 7 1072 261 0 0 0 chr12 63946564 63946593 -57310937 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1072 2536 144 70 47 chr12 63946593 63946893 -57310637 - RLTR19 LTR ERVK -175 324 2 7 1072 28 0 0 0 chr12 63947220 63947248 -57310282 + AT_rich Low_complexity Low_complexity 1 28 0 7 1072 298 276 0 20 chr12 63947382 63947482 -57310048 - L1MA4 LINE L1 -400 5900 5803 7 1072 28 29 0 0 chr12 63947787 63947822 -57309708 + AT_rich Low_complexity Low_complexity 1 35 0 7 1072 647 269 137 35 chr12 63947831 63948276 -57309254 - MT2B2 LTR ERVL 0 584 21 7 1072 27 0 0 0 chr12 63948448 63948475 -57309055 + AT_rich Low_complexity Low_complexity 1 27 0 7 1072 28 0 0 0 chr12 63949999 63950027 -57307503 + AT_rich Low_complexity Low_complexity 1 28 0 7 1072 2955 75 22 0 chr12 63951006 63951418 -57306112 + BGLII LTR ERVK 1 421 0 7 1072 5177 133 21 23 chr12 63951951 63952814 -57304716 + Lx LINE L1 5767 6627 -27 7 1072 26 0 0 0 chr12 63952815 63952841 -57304689 + AT_rich Low_complexity Low_complexity 1 26 0 7 1072 800 219 38 28 chr12 63953329 63953540 -57303990 - B3 SINE B2 0 216 4 7 1072 369 0 0 0 chr12 63953679 63953720 -57303810 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1072 2103 62 22 0 chr12 63953731 63954005 -57303525 - L1_Mus1 LINE L1 0 6567 6288 7 1072 427 94 0 0 chr12 63954005 63954058 -57303472 - L1_Mus1 LINE L1 -381 6186 6134 7 1072 233 245 19 0 chr12 63954191 63954244 -57303286 + RMER15 LTR ERVL 6 59 -516 7 1072 275 265 0 12 chr12 63954337 63954421 -57303109 + L1_Rod LINE L1 5088 5170 -677 7 1072 1027 210 159 4 chr12 63954445 63954722 -57302808 - RMER6C LTR ERVK 0 690 371 7 1072 930 150 0 53 chr12 63955057 63955226 -57302304 - RMER6C LTR ERVK -86 604 445 7 1072 718 140 9 0 chr12 63955260 63955374 -57302156 + RMER6C LTR ERVK 574 688 -2 7 1072 24 0 0 0 chr12 63955439 63955463 -57302067 + AT_rich Low_complexity Low_complexity 1 24 0 7 1072 500 343 43 34 chr12 63955536 63955744 -57301786 + B3A SINE B2 4 213 -3 7 1072 919 244 32 32 chr12 63955979 63956262 -57301268 - L1_Rod LINE L1 -751 5096 4814 7 1072 6571 133 29 8 chr12 63956282 63956396 -57301134 - Lx LINE L1 -7 6647 6520 7 1072 207 0 0 0 chr12 63956396 63956419 -57301111 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 7 1072 6571 133 29 8 chr12 63956419 63956816 -57300714 - Lx LINE L1 -135 6519 6129 7 1072 2618 134 44 27 chr12 63956816 63957290 -57300240 + RLTR45 LTR ERVK 1 482 0 7 1072 6571 133 29 8 chr12 63957290 63957803 -57299727 - Lx LINE L1 -526 6128 5601 7 1072 1554 260 24 38 chr12 63957803 63958390 -57299140 - L1_Rod LINE L1 -1019 4828 4250 7 1072 216 0 0 0 chr12 63958812 63958836 -57298694 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 1072 243 0 0 0 chr12 63958836 63958862 -57298668 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1072 287 241 21 117 chr12 63959273 63959367 -57298163 + RMER10B LTR ERVL 281 365 -33 7 1072 25 31 0 0 chr12 63959456 63959488 -57298042 + AT_rich Low_complexity Low_complexity 1 32 0 7 1072 2357 239 43 23 chr12 63959567 63960129 -57297401 + RMER15 LTR ERVL 3 575 0 7 1072 2460 205 28 14 chr12 63960242 63960736 -57296794 + RMER20A LTR ERVK 1 501 -15 7 1072 1906 144 32 3 chr12 63961532 63961846 -57295684 - Lx3B LINE L1 -328 6645 6323 7 1072 242 260 21 10 chr12 63962197 63962294 -57295236 + (TA)n Simple_repeat Simple_repeat 2 99 0 7 16 818 300 111 42 chr12 63963094 63963428 -57294102 + ORR1D2 LTR MaLR 10 366 -4 7 1073 22 35 0 0 chr12 63964030 63964059 -57293471 + AT_rich Low_complexity Low_complexity 1 29 0 7 1073 219 348 94 22 chr12 63964103 63964241 -57293289 + B3 SINE B2 68 215 -1 7 1073 402 221 205 0 chr12 63964292 63964419 -57293111 - RMER5 LTR ERV1 0 534 382 7 1073 396 286 117 63 chr12 63964466 63964671 -57292859 - RMER5 LTR ERV1 -234 300 85 7 1073 185 83 28 0 chr12 63964885 63964921 -57292609 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 7 1073 306 196 0 0 chr12 63964934 63965036 -57292494 + T-rich Low_complexity Low_complexity 1 102 0 7 1073 796 104 0 0 chr12 63965040 63965155 -57292375 - B1_Mus1 SINE Alu 0 148 34 7 1073 2044 57 15 0 chr12 63965182 63965444 -57292086 - L1_Mus1 LINE L1 -2 6565 6300 7 1073 550 82 0 0 chr12 63965465 63965550 -57291980 + L1_Mus1 LINE L1 6483 6567 0 7 1073 1391 199 110 19 chr12 63965553 63965927 -57291603 + RLTR13D6 LTR ERVK 495 902 0 7 1073 3897 181 68 63 chr12 63966128 63967039 -57290491 - Lx2B LINE L1 -16 6984 6069 7 1073 834 143 5 107 chr12 63967039 63967235 -57290295 + L1_Mur2 LINE L1 4599 4774 -1103 7 1073 426 363 76 29 chr12 63967293 63967636 -57289894 - Lx8 LINE L1 -352 7121 6763 7 1073 405 0 0 0 chr12 63970234 63970279 -57287251 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 7 1073 470 286 25 0 chr12 63970647 63970766 -57286764 - B1_Mur1 SINE Alu -1 148 27 7 1073 25 51 0 0 chr12 63971139 63971178 -57286352 + AT_rich Low_complexity Low_complexity 1 39 0 7 1073 340 385 0 0 chr12 63971296 63971426 -57286104 - ID_B1 SINE B4 -1 223 94 7 1073 423 0 0 0 chr12 63971663 63971710 -57285820 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1073 275 19 57 19 chr12 63972688 63972741 -57284789 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1073 229 259 0 17 chr12 63972741 63972800 -57284730 + GA-rich Low_complexity Low_complexity 4 61 0 7 1073 345 286 139 24 chr12 63973364 63973529 -57284001 + B4A SINE B4 91 274 -18 7 1073 22 35 0 0 chr12 63974055 63974084 -57283446 + AT_rich Low_complexity Low_complexity 1 29 0 7 1073 606 61 10 10 chr12 63974935 63975035 -57282495 - L1Md_F2 LINE L1 -2 6580 6481 7 1073 507 277 0 8 chr12 63975636 63975767 -57281763 + Lx7 LINE L1 7096 7225 -471 7 1073 187 100 0 74 chr12 63975817 63975871 -57281659 + A-rich Low_complexity Low_complexity 5 54 0 7 1073 319 212 40 48 chr12 63975878 63976002 -57281528 + Lx7 LINE L1 7292 7414 -282 7 1073 317 307 35 35 chr12 63976145 63976290 -57281240 - RLTR14 LTR ERV1 -14 368 224 7 1073 326 280 0 0 chr12 63976625 63976700 -57280830 + B3 SINE B2 5 79 -137 7 1073 25 0 0 0 chr12 63976803 63976828 -57280702 + AT_rich Low_complexity Low_complexity 1 25 0 7 1073 418 317 111 14 chr12 63977051 63977195 -57280335 - B3A SINE B2 -17 181 24 7 1073 7841 54 10 2 chr12 63978624 63979769 -57277761 - L1Md_F2 LINE L1 0 6582 5428 7 1073 256 159 129 14 chr12 63979745 63979815 -57277715 - L1Md_F2 LINE L1 -645 5238 5161 7 1073 228 106 43 0 chr12 63980828 63980875 -57276655 + (TTTTTG)n Simple_repeat Simple_repeat 4 52 0 7 1073 1032 92 28 0 chr12 63980877 63981019 -57276511 - B1_Mus1 SINE Alu 0 148 3 7 1073 2514 218 73 15 chr12 63981236 63981851 -57275679 - RLTR17 LTR ERVK -38 654 4 7 1073 462 177 94 0 chr12 63981923 63982019 -57275511 - Lx2B LINE L1 -329 6671 6567 7 1073 267 103 0 0 chr12 63982019 63982058 -57275472 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1073 361 95 32 0 chr12 63982756 63982819 -57274711 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 1073 351 0 0 0 chr12 63982819 63982858 -57274672 + (TA)n Simple_repeat Simple_repeat 2 40 0 7 1073 1229 21 7 0 chr12 63984605 63984750 -57272780 + B1_Mm SINE Alu 2 147 0 7 1073 180 143 0 0 chr12 63984750 63984792 -57272738 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1073 22 0 0 0 chr12 63984988 63985010 -57272520 + AT_rich Low_complexity Low_complexity 1 22 0 7 1073 274 396 17 33 chr12 63985264 63985384 -57272146 - ID_B1 SINE B4 -21 203 86 7 1073 22 35 0 0 chr12 63985443 63985472 -57272058 + AT_rich Low_complexity Low_complexity 1 29 0 7 1073 23 33 0 0 chr12 63985972 63986002 -57271528 + AT_rich Low_complexity Low_complexity 1 30 0 7 1073 414 221 0 0 chr12 63986121 63986216 -57271314 + CT-rich Low_complexity Low_complexity 4 98 0 7 1073 1188 106 0 0 chr12 63986219 63986398 -57271132 + (TC)n Simple_repeat Simple_repeat 2 180 0 7 1073 21 36 0 0 chr12 63987197 63987225 -57270305 + AT_rich Low_complexity Low_complexity 1 28 0 7 1073 30 0 0 0 chr12 63987331 63987361 -57270169 + AT_rich Low_complexity Low_complexity 1 30 0 7 1073 3017 218 79 11 chr12 63987362 63988109 -57269421 - Lx3C LINE L1 -3 6973 6176 7 1073 4478 166 74 2 chr12 63988105 63988966 -57268564 - L1_Mur1 LINE L1 -14 5872 4950 7 1073 254 75 25 0 chr12 63988964 63989004 -57268526 - Lx2 LINE L1 -192 6805 6765 7 1073 5215 135 41 6 chr12 63988993 63989856 -57267674 - Lx2 LINE L1 -352 6645 5753 7 1073 1041 80 0 0 chr12 63989856 63989994 -57267536 + B1_Mm SINE Alu 9 146 -1 8 1073 180 0 0 0 chr12 63990007 63990027 -57267503 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1073 10396 178 22 7 chr12 63990034 63991130 -57266400 - Lx2 LINE L1 -131 5752 4642 7 1073 207 0 0 0 chr12 63991130 63991153 -57266377 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1073 10396 178 22 7 chr12 63991153 63992056 -57265474 - Lx2 LINE L1 -1242 4641 3722 7 1073 2631 44 28 0 chr12 63992966 63993284 -57264246 + IAPLTR2b LTR ERVK 1 327 0 8 1073 288 0 41 41 chr12 63993611 63993660 -57263870 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1073 987 62 70 0 chr12 63993660 63993788 -57263742 - B1_Mus2 SINE Alu -9 138 2 8 1073 472 283 94 5 chr12 63993929 63994121 -57263409 + B3 SINE B2 2 210 -6 8 1073 213 365 0 0 chr12 63994389 63994463 -57263067 + B3A SINE B2 1 74 -124 8 1073 212 41 39 58 chr12 63995334 63995386 -57262144 + (CAAAAA)n Simple_repeat Simple_repeat 3 53 0 8 1073 32 75 0 0 chr12 63996080 63996147 -57261383 + AT_rich Low_complexity Low_complexity 1 67 0 8 1073 37 0 0 0 chr12 63996404 63996441 -57261089 + AT_rich Low_complexity Low_complexity 1 37 0 8 1073 26 74 0 0 chr12 63997373 63997427 -57260103 + AT_rich Low_complexity Low_complexity 1 54 0 8 1073 4483 133 49 12 chr12 63998334 63999927 -57257603 + L1Md_F LINE L1 233 1873 -4010 8 1073 480 79 0 0 chr12 63999924 64000000 -57257530 + L1Md_F LINE L1 2050 2125 -3758 8 1073 24755 80 9 0 chr12 64000000 64003420 -57254110 + L1Md_F2 LINE L1 2126 5575 -308 1 1073 7441 72 7 2 chr12 64003420 64004410 -57253120 + L1Md_F2 LINE L1 5587 6581 -1 1 1073 195 100 0 0 chr12 64004561 64004591 -57252939 + (CAT)n Simple_repeat Simple_repeat 1 30 0 2 1073 21 57 0 0 chr12 64004694 64004729 -57252801 + AT_rich Low_complexity Low_complexity 1 35 0 3 1073 279 0 0 0 chr12 64005083 64005114 -57252416 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 4 1073 483 18 0 0 chr12 64005198 64005254 -57252276 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1073 1178 199 195 34 chr12 64005254 64005633 -57251897 - RMER6C LTR ERVK -250 440 1 6 1073 24 67 0 0 chr12 64005802 64005847 -57251683 + AT_rich Low_complexity Low_complexity 1 45 0 7 1073 383 336 93 35 chr12 64005855 64006190 -57251340 - L1MA7 LINE L1 -27 6264 5906 8 1073 405 0 0 0 chr12 64006190 64006235 -57251295 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1073 383 336 93 35 chr12 64006235 64006809 -57250721 - L1MA7 LINE L1 -386 5905 5302 8 1073 887 69 0 34 chr12 64006956 64007105 -57250425 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 1 1073 465 19 0 0 chr12 64007105 64007158 -57250372 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 1 1073 783 0 0 0 chr12 64007158 64007245 -57250285 + (TTC)n Simple_repeat Simple_repeat 2 88 0 1 1073 962 78 7 0 chr12 64007245 64007399 -57250131 + (TTCC)n Simple_repeat Simple_repeat 3 157 0 1 1073 30 45 0 0 chr12 64007445 64007489 -57250041 + AT_rich Low_complexity Low_complexity 1 44 0 1 1073 21 0 0 0 chr12 64007507 64007528 -57250002 + AT_rich Low_complexity Low_complexity 1 21 0 1 1073 609 286 69 18 chr12 64007659 64007876 -57249654 + MTC LTR MaLR 187 414 -7 1 1073 222 200 0 0 chr12 64008081 64008121 -57249409 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1073 200 200 0 0 chr12 64008313 64008353 -57249177 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1073 24 0 0 0 chr12 64008458 64008482 -57249048 + AT_rich Low_complexity Low_complexity 1 24 0 1 1073 235 306 0 0 chr12 64008626 64008698 -57248832 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1073 331 331 33 39 chr12 64008699 64008881 -57248649 - B3A SINE B2 -16 182 2 2 1073 7090 90 20 2 chr12 64009664 64010665 -57246865 - L1_Mus3 LINE L1 -3 6635 5644 2 1073 279 306 114 39 chr12 64010895 64011236 -57246294 - L1MB1 LINE L1 -111 6072 5702 2 1073 24 85 0 0 chr12 64012078 64012137 -57245393 + AT_rich Low_complexity Low_complexity 1 59 0 2 1073 228 86 0 0 chr12 64012378 64012413 -57245117 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1073 862 272 89 26 chr12 64012751 64013098 -57244432 - ORR1D2 LTR MaLR 0 370 2 2 1073 21 0 0 0 chr12 64013493 64013514 -57244016 + AT_rich Low_complexity Low_complexity 1 21 0 2 1073 27 29 0 0 chr12 64014453 64014487 -57243043 + AT_rich Low_complexity Low_complexity 1 34 0 2 1073 661 309 49 28 chr12 64014501 64014576 -57242954 + Lx9 LINE L1 6972 7059 -585 2 1073 387 41 0 0 chr12 64014576 64014625 -57242905 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1073 291 28 0 0 chr12 64014625 64014660 -57242870 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1073 661 309 49 28 chr12 64014660 64014869 -57242661 + Lx9 LINE L1 7060 7262 -382 2 1073 1011 136 19 0 chr12 64016062 64016224 -57241306 - B2_Mm2 SINE B2 -2 193 29 3 1073 435 151 0 0 chr12 64016229 64016322 -57241208 + T-rich Low_complexity Low_complexity 1 93 0 3 1073 1134 75 0 0 chr12 64016323 64016470 -57241060 - B1_Mus1 SINE Alu -1 147 1 3 1073 21 36 0 0 chr12 64016496 64016524 -57241006 + AT_rich Low_complexity Low_complexity 1 28 0 3 1073 21 0 0 0 chr12 64016564 64016585 -57240945 + AT_rich Low_complexity Low_complexity 1 21 0 3 1073 23 0 0 0 chr12 64017052 64017075 -57240455 + AT_rich Low_complexity Low_complexity 1 23 0 3 1073 832 272 83 62 chr12 64017127 64017562 -57239968 - Lx8 LINE L1 -2 7471 7028 3 1073 4912 159 10 45 chr12 64017903 64018891 -57238639 - RMER17B LTR ERVK -4 954 1 3 1073 23 0 0 0 chr12 64019155 64019178 -57238352 + AT_rich Low_complexity Low_complexity 1 23 0 4 1073 389 66 16 0 chr12 64019268 64019329 -57238201 + (CATA)n Simple_repeat Simple_repeat 2 63 0 4 1073 21 57 0 0 chr12 64019536 64019571 -57237959 + AT_rich Low_complexity Low_complexity 1 35 0 4 1073 232 146 21 0 chr12 64019718 64019766 -57237764 + Lx9 LINE L1 7595 7643 -1 4 1073 2208 188 24 16 chr12 64021441 64021926 -57235604 - ORR1A4-int LTR MaLR -797 1166 326 4 1073 695 233 0 96 chr12 64021880 64022046 -57235484 - MT2B LTR ERVL -309 292 143 4 1073 3463 180 56 11 chr12 64021990 64022719 -57234811 - ORR1A4-int LTR MaLR -1201 762 1 4 1073 1538 181 57 16 chr12 64022719 64023033 -57234497 - ORR1A4 LTR MaLR 0 329 3 4 1073 284 344 0 0 chr12 64024056 64024181 -57233349 + (TTAGGG)n Simple_repeat Simple_repeat 4 128 0 4 1073 33 0 0 0 chr12 64024345 64024378 -57233152 + AT_rich Low_complexity Low_complexity 1 33 0 4 1073 226 186 122 47 chr12 64024429 64024536 -57232994 - Lx9 LINE L1 -52 7592 7478 4 1073 254 268 0 0 chr12 64024536 64024592 -57232938 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 4 1073 993 352 33 34 chr12 64024615 64025342 -57232188 - Lx9 LINE L1 -356 7288 6563 5 1073 696 35 0 0 chr12 64025401 64025488 -57232042 + (TG)n Simple_repeat Simple_repeat 1 87 0 5 1073 24 32 0 0 chr12 64025630 64025661 -57231869 + AT_rich Low_complexity Low_complexity 1 31 0 5 1073 6043 123 18 14 chr12 64026576 64026727 -57230803 - Lx3_Mus LINE L1 -31 6978 6829 5 1073 5898 80 6 9 chr12 64026727 64027535 -57229995 + RLTR13D1 LTR ERVK 1 806 0 5 1073 6043 123 18 14 chr12 64027535 64028327 -57229203 - Lx3_Mus LINE L1 -181 6828 6031 5 1073 26 0 0 0 chr12 64028327 64028353 -57229177 + AT_rich Low_complexity Low_complexity 1 26 0 5 1073 324 175 0 0 chr12 64028432 64028495 -57229035 + T-rich Low_complexity Low_complexity 1 63 0 5 1073 6419 90 4 8 chr12 64029182 64030096 -57227434 + L1_Mus3 LINE L1 5725 6635 -3 5 1073 201 94 0 0 chr12 64030291 64030323 -57227207 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1073 1379 151 75 4 chr12 64031027 64031266 -57226264 + Lx2 LINE L1 6388 6643 -354 5 1073 1168 163 4 38 chr12 64031266 64031502 -57226028 + Lx LINE L1 6427 6654 0 6 1073 417 188 0 0 chr12 64031504 64031589 -57225941 + A-rich Low_complexity Low_complexity 1 85 0 6 1073 255 284 83 28 chr12 64031628 64031809 -57225721 + L1M2 LINE L1 5548 5738 -553 6 1073 366 85 0 0 chr12 64032009 64032068 -57225462 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1073 826 101 108 0 chr12 64032199 64032338 -57225192 + B2_Mm1t SINE B2 1 154 -39 6 1073 447 19 0 0 chr12 64032342 64032394 -57225136 + (TAA)n Simple_repeat Simple_repeat 3 54 0 6 1073 290 142 310 43 chr12 64032451 64032567 -57224963 + B2_Mm2 SINE B2 47 193 -2 6 1073 3377 224 33 23 chr12 64033503 64034254 -57223276 + Lx5 LINE L1 6148 6954 -104 6 1073 477 34 0 0 chr12 64034254 64034313 -57223217 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1073 3105 239 64 31 chr12 64034313 64034417 -57223113 + Lx5 LINE L1 6955 7054 -4 6 1073 2427 81 36 3 chr12 64034938 64035273 -57222257 - ORR1A1 LTR MaLR 0 346 1 6 1073 1739 123 3 31 chr12 64035302 64035588 -57221942 - Lx LINE L1 -3 6651 6374 7 1073 432 118 0 0 chr12 64036963 64037031 -57220499 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1073 370 196 21 0 chr12 64038772 64038869 -57218661 + (TA)n Simple_repeat Simple_repeat 2 100 0 7 1073 737 62 0 26 chr12 64039534 64039649 -57217881 + L1Md_F2 LINE L1 6459 6570 -12 7 1073 4011 174 16 18 chr12 64039890 64040650 -57216880 + Lx2B LINE L1 6238 6995 -5 7 1073 239 0 27 0 chr12 64040824 64040861 -57216669 - L1_Mus2 LINE L1 0 6566 6529 7 1073 26 30 0 0 chr12 64040867 64040900 -57216630 + AT_rich Low_complexity Low_complexity 1 33 0 7 1073 751 251 88 5 chr12 64040962 64041166 -57216364 - MTD LTR MaLR -2 417 197 7 1073 837 56 0 0 chr12 64041167 64041274 -57216256 + (TTCCC)n Simple_repeat Simple_repeat 3 109 0 7 1073 669 299 129 4 chr12 64041464 64041689 -57215841 - MTD LTR MaLR -9 410 158 7 1073 405 58 0 0 chr12 64041696 64041748 -57215782 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1073 27 0 0 0 chr12 64042023 64042050 -57215480 + AT_rich Low_complexity Low_complexity 1 27 0 8 1073 9303 168 29 9 chr12 64042192 64042339 -57215191 + Lx LINE L1 4104 4248 -1635 8 1073 347 0 0 23 chr12 64042339 64042383 -57215147 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 8 1073 9303 155 25 6 chr12 64042383 64044727 -57212803 + Lx LINE L1 4249 6648 -6 8 1073 235 360 43 14 chr12 64045594 64045735 -57211795 - L2a LINE L2 -156 3270 3126 8 1073 219 269 0 0 chr12 64046572 64046639 -57210891 + (CCA)n Simple_repeat Simple_repeat 1 67 0 8 1073 3693 59 0 0 chr12 64046767 64047222 -57210308 - L1Md_F3 LINE L1 -150 5733 5279 8 1073 6864 35 0 4 chr12 64047222 64048051 -57209479 + L1Md_F3 LINE L1 5759 6584 0 8 1073 344 314 47 106 chr12 64048052 64048499 -57209031 + Lx8 LINE L1 6614 7025 -448 8 1073 30 59 0 0 chr12 64049005 64049056 -57208474 + AT_rich Low_complexity Low_complexity 1 51 0 8 1073 254 329 24 0 chr12 64049467 64049552 -57207978 + MTEb LTR MaLR 278 364 -15 8 1073 459 89 0 43 chr12 64049627 64049721 -57207809 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 9 1073 22 0 0 0 chr12 64050834 64050856 -57206674 + AT_rich Low_complexity Low_complexity 1 22 0 9 1073 409 50 0 32 chr12 64050882 64050944 -57206586 + B1_Mus1 SINE Alu 1 60 -88 9 1073 206 7 6 152 chr12 64050947 64051125 -57206405 + GA-rich Low_complexity Low_complexity 3 154 0 9 1073 756 67 0 0 chr12 64051146 64051251 -57206279 + B1_Mus2 SINE Alu 42 146 -1 9 1073 310 69 35 0 chr12 64051252 64051310 -57206220 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 9 1073 209 333 0 0 chr12 64051616 64051697 -57205833 + (TG)n Simple_repeat Simple_repeat 2 82 0 9 1073 1008 116 0 0 chr12 64051845 64051991 -57205539 + B1_Mus2 SINE Alu 2 147 0 9 1073 333 0 0 0 chr12 64051991 64052028 -57205502 + (A)n Simple_repeat Simple_repeat 1 37 0 9 1073 285 29 0 0 chr12 64052187 64052221 -57205309 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1073 276 30 0 0 chr12 64052221 64052253 -57205277 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1073 292 253 6 6 chr12 64052254 64052421 -57205109 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 1073 25 83 0 0 chr12 64052656 64052716 -57204814 + AT_rich Low_complexity Low_complexity 1 60 0 1 1073 648 313 45 21 chr12 64052860 64053236 -57204294 + L1_Rod LINE L1 2337 2721 -3126 1 1073 662 203 125 22 chr12 64053391 64053616 -57203914 - ORR1D1 LTR MaLR 0 384 150 1 1073 514 272 101 62 chr12 64053575 64053783 -57203747 - RMER13B LTR ERVK -171 737 522 1 1073 478 186 59 0 chr12 64053778 64053880 -57203650 - RMER13B LTR ERVK -597 263 156 1 1073 538 220 14 0 chr12 64053887 64054028 -57203502 + CT-rich Low_complexity Low_complexity 2 144 0 1 1073 2964 82 47 5 chr12 64054033 64054461 -57203069 - L1_Mus3 LINE L1 0 6638 6193 1 1073 301 191 127 25 chr12 64054510 64054628 -57202902 + Lx9 LINE L1 7380 7509 -135 1 1073 308 208 143 0 chr12 64054704 64054781 -57202749 + Lx9 LINE L1 7172 7259 -385 1 1073 22 0 0 0 chr12 64054815 64054837 -57202693 + AT_rich Low_complexity Low_complexity 1 22 0 1 1073 2666 282 123 22 chr12 64054882 64055966 -57201564 - Lx9 LINE L1 -415 7229 6037 1 1073 21 57 0 0 chr12 64056878 64056913 -57200617 + AT_rich Low_complexity Low_complexity 1 35 0 1 1073 361 378 51 37 chr12 64057094 64057311 -57200219 - B4 SINE B4 -3 289 70 1 1073 8534 119 18 11 chr12 64057757 64059715 -57197815 + Lx3A LINE L1 5006 6975 -6 1 1073 189 0 0 0 chr12 64059773 64059794 -57197736 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 1073 261 98 0 0 chr12 64059796 64059837 -57197693 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1073 930 121 0 0 chr12 64060212 64060352 -57197178 + MTB_Mm LTR MaLR 268 407 0 1 1073 2054 156 87 21 chr12 64060352 64060778 -57196752 + MTB_Mm-int LTR MaLR 1 454 -644 1 1073 33862 36 1 0 chr12 64060778 64066988 -57190542 + L1Md_T LINE L1 1 5589 -297 1 1073 9056 4 0 0 chr12 64066988 64068007 -57189523 + L1Md_T LINE L1 5590 6585 0 1 1073 3235 173 174 12 chr12 64068007 64068738 -57188792 + MTB_Mm-int LTR MaLR 380 1228 -30 1 1073 1916 95 4 0 chr12 64068732 64068994 -57188536 + MTB_Mm LTR MaLR 145 407 0 1 1073 1085 247 168 104 chr12 64069904 64070405 -57187125 + MT2A LTR ERVL 1 533 0 1 1073 21 36 0 0 chr12 64070549 64070577 -57186953 + AT_rich Low_complexity Low_complexity 1 28 0 1 1073 695 79 0 19 chr12 64070578 64070681 -57186849 + B1_Mus2 SINE Alu 47 147 0 1 1073 216 204 0 0 chr12 64070832 64070876 -57186654 + T-rich Low_complexity Low_complexity 1 44 0 1 1073 5005 60 0 17 chr12 64070947 64071596 -57185934 + L1_Mus1 LINE L1 5930 6567 0 1 1073 474 18 0 0 chr12 64072206 64072261 -57185269 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1073 714 251 11 30 chr12 64073024 64073287 -57184243 - Lx9 LINE L1 -1 7643 7386 1 1073 1075 37 0 0 chr12 64073735 64073869 -57183661 + B1_Mm SINE Alu 14 147 0 1 1073 948 311 70 24 chr12 64074061 64074568 -57182962 - Lx5 LINE L1 -82 7378 6484 1 1073 513 311 80 29 chr12 64074571 64074864 -57182666 - Lx5 LINE L1 -688 6362 6031 1 1073 3716 204 47 24 chr12 64074865 64075630 -57181900 + RMER13A LTR ERVK 1 783 -77 1 1073 1949 194 60 13 chr12 64075703 64076315 -57181215 - Lx5 LINE L1 -1019 6031 5382 1 1073 1252 61 0 12 chr12 64076927 64077093 -57180437 + L1_Mus1 LINE L1 6404 6567 0 1 1073 355 307 79 0 chr12 64077234 64077335 -57180195 + RSINE1 SINE B4 17 125 -40 1 1073 633 25 0 0 chr12 64077335 64077416 -57180114 + L1Md_A LINE L1 244 324 -6400 1 1073 36281 12 0 6 chr12 64077408 64082181 -57175349 + L1Md_A LINE L1 854 5586 -297 1 1073 8756 14 1 2 chr12 64082181 64083178 -57174352 + L1Md_A LINE L1 5587 6582 0 1 1073 252 0 0 0 chr12 64084022 64084050 -57173480 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1073 375 163 41 28 chr12 64084804 64084949 -57172581 + GA-rich Low_complexity Low_complexity 2 148 0 1 1073 913 152 6 6 chr12 64084965 64085137 -57172393 + GA-rich Low_complexity Low_complexity 2 173 0 1 1073 258 279 96 87 chr12 64085143 64085339 -57172191 + MTE2a LTR MaLR 197 364 -15 1 1073 21 0 0 0 chr12 64085987 64086008 -57171522 + AT_rich Low_complexity Low_complexity 1 21 0 1 1073 33560 38 1 1 chr12 64086010 64091410 -57166120 + L1Md_T LINE L1 94 5589 -297 1 1073 8913 11 0 0 chr12 64091411 64092404 -57165126 + L1Md_T LINE L1 5591 6583 -2 1 1073 182 118 29 0 chr12 64092484 64092518 -57165012 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1073 206 123 48 81 chr12 64092518 64092580 -57164950 + CT-rich Low_complexity Low_complexity 4 63 0 1 1073 4716 110 23 34 chr12 64092680 64093454 -57164076 - L1_Mus4 LINE L1 0 6636 5871 1 1073 32 26 0 0 chr12 64093640 64093679 -57163851 + AT_rich Low_complexity Low_complexity 1 39 0 1 1074 247 65 43 0 chr12 64094360 64094406 -57163124 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1074 303 376 73 19 chr12 64094472 64094732 -57162798 - B4A SINE B4 -18 274 1 1 1074 1693 202 33 36 chr12 64096047 64096412 -57161118 - RMER6C LTR ERVK -326 364 1 1 1074 1831 180 25 11 chr12 64096412 64096778 -57160752 - RMER6-int LTR ERVK 0 3177 2807 1 1074 240 35 0 0 chr12 64096851 64096880 -57160650 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1074 2387 270 59 30 chr12 64098404 64099198 -57158332 - Lx5 LINE L1 -279 6771 5955 1 1074 7690 39 6 11 chr12 64099192 64100467 -57157063 - L1Md_F2 LINE L1 0 6582 5313 1 1074 3837 183 12 52 chr12 64100464 64101316 -57156214 - Lx5 LINE L1 -1090 5968 5112 1 1074 1005 137 41 6 chr12 64101316 64101485 -57156045 - B2_Mm1t SINE B2 -18 175 1 1 1074 3837 183 12 52 chr12 64101485 64101892 -57155638 - Lx5 LINE L1 -1090 5111 4701 1 1074 421 144 50 20 chr12 64101890 64101989 -57155541 - Lx5 LINE L1 -1360 4517 4416 1 1074 1453 202 11 25 chr12 64101991 64102270 -57155260 - ORR1A4 LTR MaLR -52 277 3 1 1074 29 28 0 0 chr12 64102394 64102430 -57155100 + AT_rich Low_complexity Low_complexity 1 36 0 1 1074 1782 174 8 21 chr12 64102555 64102942 -57154588 + Lx2 LINE L1 5938 6319 -678 1 1074 1226 232 51 29 chr12 64102942 64103257 -57154273 - RMER5 LTR ERV1 -200 334 13 1 1074 293 131 131 0 chr12 64103282 64103343 -57154187 - L1_Mur1 LINE L1 -254 5632 5564 1 1074 2695 217 48 106 chr12 64103343 64104250 -57153280 + RLTR13A LTR ERVK 1 855 0 1 1074 8431 95 7 59 chr12 64104250 64105706 -57151824 - L1_Mur1 LINE L1 -317 5569 4190 1 1074 2197 92 6 0 chr12 64105698 64106034 -57151496 + L1_Mur1 LINE L1 3869 4206 -1680 1 1074 18950 110 99 12 chr12 64106041 64106763 -57150767 - L1_Mus3 LINE L1 -7 6631 5844 1 1074 3257 38 8 2 chr12 64106763 64107157 -57150373 + MTA_Mm LTR MaLR 1 396 0 1 1074 18950 142 16 82 chr12 64107157 64109013 -57148517 - L1_Mus3 LINE L1 -40 5843 4126 1 1074 230 172 109 0 chr12 64109013 64109077 -57148453 - RLTR1D LTR ERV1 -501 104 34 1 1074 18950 142 16 82 chr12 64109077 64111692 -57145838 - L1_Mus3 LINE L1 -40 4125 1704 1 1074 2105 125 51 8 chr12 64111695 64112049 -57145481 - RLTR13D4 LTR ERVK 0 1033 665 1 1074 2199 114 9 9 chr12 64112014 64112359 -57145171 + RLTR9E LTR ERVK 65 409 0 1 1074 3508 162 13 38 chr12 64112359 64112973 -57144557 - L1VL1 LINE L1 -5603 819 221 1 1074 6403 191 282 25 chr12 64112994 64114820 -57142710 - Lx5 LINE L1 -1451 4426 2050 1 1074 351 0 0 0 chr12 64114820 64114859 -57142671 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1074 297 0 0 0 chr12 64114859 64114891 -57142639 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1074 6403 191 282 25 chr12 64114891 64115197 -57142333 - Lx5 LINE L1 -3828 2049 1746 1 1074 3004 262 42 40 chr12 64115212 64116106 -57141424 - RLTR14-int LTR ERV1 -998 4319 3424 1 1074 1841 229 11 11 chr12 64116129 64116433 -57141097 - RLTR14 LTR ERV1 0 382 77 1 1074 633 14 0 0 chr12 64116433 64116507 -57141023 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 1 1074 1165 44 0 0 chr12 64116507 64116644 -57140886 - B1_Mm SINE Alu -10 137 1 1 1074 1841 229 11 11 chr12 64116644 64116714 -57140816 - RLTR14 LTR ERV1 -306 76 8 1 1074 23 0 0 0 chr12 64116746 64116769 -57140761 + AT_rich Low_complexity Low_complexity 1 23 0 1 1074 3790 247 80 64 chr12 64116779 64118218 -57139312 - RLTR14-int LTR ERV1 -3761 3840 2033 1 1074 1188 253 30 10 chr12 64118257 64118552 -57138978 - RLTR14-int LTR ERV1 -3274 2043 1743 1 1074 369 0 0 0 chr12 64118646 64118687 -57138843 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1074 520 301 47 29 chr12 64118789 64119092 -57138438 - RLTR14-int LTR ERV1 -3640 1677 1506 1 1074 495 48 0 0 chr12 64119184 64119246 -57138284 + (TTTTC)n Simple_repeat Simple_repeat 2 63 0 1 1074 345 212 15 29 chr12 64119272 64119340 -57138190 + MTD LTR MaLR 210 276 -143 1 1074 1063 100 0 0 chr12 64119703 64119843 -57137687 + B1_Mus1 SINE Alu 3 142 -6 1 1074 216 0 0 0 chr12 64119847 64119871 -57137659 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1074 367 287 105 16 chr12 64119974 64120098 -57137432 + MTD LTR MaLR 272 406 -13 1 1074 307 299 41 0 chr12 64120932 64121079 -57136451 + L1M3 LINE L1 3621 3773 -2367 1 1074 247 351 8 51 chr12 64121095 64121212 -57136318 + PB1D10 SINE Alu 6 117 0 1 1074 627 304 38 0 chr12 64121239 64121423 -57136107 - ORR1D2 LTR MaLR -8 362 172 1 1074 483 267 22 104 chr12 64121423 64121653 -57135877 - RLTR31_Mm LTR ERVK 0 561 351 1 1074 3766 183 11 8 chr12 64121655 64122320 -57135210 - RLTR17 LTR ERVK -23 669 3 1 1074 577 358 0 6 chr12 64122320 64122481 -57135049 - ORR1D2 LTR MaLR -191 179 20 1 1074 2697 267 56 70 chr12 64122514 64123475 -57134055 + Lx7 LINE L1 5974 6921 -775 1 1074 30 27 0 0 chr12 64123679 64123716 -57133814 + AT_rich Low_complexity Low_complexity 1 37 0 1 1074 250 265 0 73 chr12 64123874 64123984 -57133546 + GA-rich Low_complexity Low_complexity 1 102 0 1 1074 445 176 0 0 chr12 64124129 64124220 -57133310 + L1_Rod LINE L1 2083 2173 -3674 1 1074 244 222 0 0 chr12 64124235 64124298 -57133232 + A-rich Low_complexity Low_complexity 1 63 0 1 1074 3594 147 8 10 chr12 64124577 64125183 -57132347 + Lx3A LINE L1 6374 6978 -3 1 1074 246 32 0 0 chr12 64125189 64125220 -57132310 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1074 312 102 0 0 chr12 64126534 64126593 -57130937 - Lx2 LINE L1 0 6997 6939 1 1074 28 71 0 0 chr12 64126595 64126651 -57130879 + AT_rich Low_complexity Low_complexity 1 56 0 1 1074 31 44 0 0 chr12 64126876 64126921 -57130609 + AT_rich Low_complexity Low_complexity 1 45 0 1 1074 351 0 0 0 chr12 64126974 64127013 -57130517 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1074 22 88 0 0 chr12 64127124 64127181 -57130349 + AT_rich Low_complexity Low_complexity 1 57 0 1 1074 288 77 0 0 chr12 64127555 64127594 -57129936 + (TATAA)n Simple_repeat Simple_repeat 1 39 0 1 1074 231 36 0 0 chr12 64127596 64127624 -57129906 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1074 2586 116 0 3 chr12 64127877 64127923 -57129607 - Lx3_Mus LINE L1 -1035 5974 5929 1 1074 207 0 0 0 chr12 64127923 64127946 -57129584 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1074 4154 107 41 2 chr12 64127946 64128606 -57128924 - Lx3_Mus LINE L1 -1081 5928 5246 1 1074 203 56 56 0 chr12 64128614 64128650 -57128880 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1074 1464 152 37 15 chr12 64128650 64128918 -57128612 - RLTR9A LTR ERVK -94 274 1 1 1074 335 111 0 36 chr12 64128937 64128993 -57128537 - ETnERV2-int LTR ERVK -22 7384 7331 1 1074 449 237 0 50 chr12 64129441 64129561 -57127969 - ETnERV2-int LTR ERVK -1196 6210 6097 1 1074 786 77 0 52 chr12 64129575 64129731 -57127799 + B1_Mus1 SINE Alu 22 150 0 1 1074 198 103 0 0 chr12 64129732 64129761 -57127769 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1074 1897 100 3 31 chr12 64129773 64130062 -57127468 - ETnERV2-int LTR ERVK -1230 4176 3896 2 1074 209 109 22 0 chr12 64130064 64130110 -57127420 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1074 13238 175 48 53 chr12 64130110 64133419 -57124111 - ETnERV2-int LTR ERVK -3312 4094 1084 2 1074 849 47 0 0 chr12 64133419 64133525 -57124005 + (TC)n Simple_repeat Simple_repeat 2 107 0 2 1074 213 146 41 20 chr12 64133557 64133606 -57123924 + T-rich Low_complexity Low_complexity 1 50 0 2 1074 451 96 249 2 chr12 64133854 64133951 -57123579 - RLTR9A LTR ERVK 0 368 257 2 1074 8620 87 3 9 chr12 64133952 64135188 -57122342 - L1_Mur1 LINE L1 -626 5260 4032 2 1074 6039 137 15 7 chr12 64135189 64136207 -57121323 + Lx3_Mus LINE L1 5982 7007 -2 2 1074 201 147 0 0 chr12 64136251 64136285 -57121245 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1074 10111 60 4 18 chr12 64136652 64138733 -57118797 - L1Md_F3 LINE L1 0 6584 4534 2 1074 13336 88 14 16 chr12 64138720 64141093 -57116437 - L1Md_F3 LINE L1 -2780 3103 735 2 1074 1000 184 0 26 chr12 64141094 64141289 -57116241 - L1VL1 LINE L1 -6232 190 1 2 1074 276 342 0 12 chr12 64141414 64141494 -57116036 + ID4_ SINE ID 2 80 -3 2 1074 26 50 0 0 chr12 64141681 64141721 -57115809 + AT_rich Low_complexity Low_complexity 1 40 0 2 1074 233 333 0 0 chr12 64142183 64142237 -57115293 + tRNA-Ala-GCY_ tRNA tRNA 5 58 -17 2 1074 23 68 0 0 chr12 64142656 64142700 -57114830 + AT_rich Low_complexity Low_complexity 1 44 0 2 1074 37806 31 1 0 chr12 64142812 64149283 -57108247 - L1Md_T LINE L1 0 6585 8 2 1074 493 238 29 0 chr12 64149318 64149423 -57108107 - B1_Mus1 SINE Alu -7 141 34 2 1074 219 167 0 0 chr12 64149632 64149674 -57107856 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 2 1074 651 365 96 24 chr12 64149890 64150238 -57107292 - Lx8 LINE L1 -237 7236 6885 2 1074 3135 50 37 0 chr12 64150238 64150620 -57106910 - MTA_Mm LTR MaLR 0 396 1 2 1074 651 365 96 24 chr12 64150620 64150907 -57106623 - Lx8 LINE L1 -589 6884 6555 2 1074 395 280 72 83 chr12 64151166 64151407 -57106123 - RMER12 LTR ERVK -164 1158 997 2 1074 267 222 32 0 chr12 64151407 64151533 -57105997 + GA-rich Low_complexity Low_complexity 5 134 0 2 1074 1293 267 184 42 chr12 64151741 64152479 -57105051 - RMER12 LTR ERVK -395 1009 1 2 1074 427 329 7 35 chr12 64152795 64152937 -57104593 - ID_B1 SINE B4 -8 216 79 2 1074 192 40 0 0 chr12 64153107 64153132 -57104398 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1074 25 0 0 0 chr12 64153247 64153272 -57104258 + AT_rich Low_complexity Low_complexity 1 25 0 2 1074 1392 70 11 0 chr12 64153341 64153528 -57104002 + B2_Mm1t SINE B2 2 190 -3 2 1074 28 48 0 0 chr12 64153684 64153726 -57103804 + AT_rich Low_complexity Low_complexity 1 42 0 2 1074 21 36 0 0 chr12 64153930 64153958 -57103572 + AT_rich Low_complexity Low_complexity 1 28 0 2 1074 26 30 0 0 chr12 64154188 64154221 -57103309 + AT_rich Low_complexity Low_complexity 1 33 0 2 1074 348 353 68 32 chr12 64154378 64154659 -57102871 - Lx8 LINE L1 -458 7015 6725 2 1074 2613 123 10 0 chr12 64154934 64155349 -57102181 + L1_Mur2 LINE L1 3857 4275 -1602 2 1074 876 324 97 14 chr12 64155347 64155841 -57101689 + Lx8 LINE L1 6794 7328 -145 2 1074 207 100 0 0 chr12 64155915 64155945 -57101585 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 2 1074 4048 207 50 14 chr12 64156079 64156914 -57100616 - Lx2 LINE L1 -1 6996 6132 2 1074 23 33 0 0 chr12 64157184 64157214 -57100316 + AT_rich Low_complexity Low_complexity 1 30 0 2 1074 460 319 15 35 chr12 64157296 64157494 -57100036 - B3A SINE B2 0 198 5 2 1074 2040 249 20 16 chr12 64158521 64159015 -57098515 + Lx6 LINE L1 6681 7176 -284 2 1074 455 338 100 54 chr12 64159257 64159607 -57097923 - MLT2B2 LTR ERVL -101 414 49 2 1074 567 0 0 0 chr12 64160264 64160327 -57097203 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1074 450 36 0 0 chr12 64160334 64160390 -57097140 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2 1074 21 0 0 0 chr12 64160630 64160651 -57096879 + AT_rich Low_complexity Low_complexity 1 21 0 2 1074 531 87 46 37 chr12 64160658 64160770 -57096760 + ORR1B1 LTR MaLR 1 139 -255 2 1074 435 286 8 0 chr12 64161865 64161984 -57095546 + Lx9 LINE L1 7209 7328 -316 2 1074 7312 133 13 71 chr12 64161981 64163004 -57094526 - Lx3B LINE L1 -844 6129 5109 2 1074 427 146 165 10 chr12 64163004 64163101 -57094429 - MTC LTR MaLR -52 369 258 2 1074 7312 133 13 71 chr12 64163101 64163606 -57093924 - Lx3B LINE L1 -844 5108 4603 2 1074 4341 165 30 16 chr12 64163606 64164429 -57093101 + Lx3A LINE L1 6147 6981 0 2 1074 627 98 0 0 chr12 64164456 64164548 -57092982 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 2 1074 723 239 128 27 chr12 64164563 64164860 -57092670 + Lx9 LINE L1 7315 7641 -3 2 1074 493 218 69 0 chr12 64165903 64166004 -57091526 - B1_Mur3 SINE Alu -41 108 1 2 1074 358 318 28 9 chr12 64166144 64166252 -57091278 - B4A SINE B4 -133 159 50 2 1074 222 37 0 0 chr12 64166253 64166280 -57091250 + (TTC)n Simple_repeat Simple_repeat 1 27 0 2 1074 225 163 0 0 chr12 64166375 64166424 -57091106 - L1_Mus1 LINE L1 0 6567 6519 2 1074 22622 126 18 14 chr12 64166685 64172858 -57084672 - L1Md_F2 LINE L1 -7 6575 503 2 1074 527 219 53 0 chr12 64172854 64172968 -57084562 - L1Md_F LINE L1 -5986 533 414 2 1074 216 0 0 0 chr12 64173014 64173038 -57084492 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1074 246 196 18 18 chr12 64174267 64174324 -57083206 + Lx3B LINE L1 6914 6970 -3 2 1074 3681 86 84 38 chr12 64174412 64174968 -57082562 - L1_Mus2 LINE L1 0 6566 5985 2 1074 25 65 0 0 chr12 64175011 64175057 -57082473 + AT_rich Low_complexity Low_complexity 1 46 0 2 1074 22 80 0 0 chr12 64175276 64175326 -57082204 + AT_rich Low_complexity Low_complexity 1 50 0 2 1074 243 0 0 0 chr12 64175593 64175620 -57081910 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2 1074 5357 128 58 3 chr12 64175623 64176497 -57081033 - Lx3_Mus LINE L1 -19 6990 6069 2 1074 780 90 9 0 chr12 64176580 64176691 -57080839 + B1_Mm SINE Alu 36 147 0 2 1074 229 78 38 38 chr12 64176692 64176745 -57080785 + A-rich Low_complexity Low_complexity 3 55 0 2 1074 269 328 56 0 chr12 64176903 64177028 -57080502 + Lx9 LINE L1 3423 3554 -2293 2 1074 234 303 0 15 chr12 64177128 64177195 -57080335 + Lx9 LINE L1 3592 3657 -2190 2 1074 6900 133 7 1 chr12 64177262 64178327 -57079203 - Lx2 LINE L1 -337 6660 5590 2 1074 1784 279 72 117 chr12 64178337 64179234 -57078296 + Lx9 LINE L1 4229 5169 -678 2 1074 971 250 164 15 chr12 64179234 64179563 -57077967 - ORR1C2 LTR MaLR -4 380 3 2 1074 1784 279 72 117 chr12 64179563 64179679 -57077851 + Lx9 LINE L1 5170 5237 -610 2 1074 315 23 0 0 chr12 64179679 64179723 -57077807 + L1_Mus2 LINE L1 6523 6566 0 2 1074 1784 273 59 97 chr12 64179723 64180344 -57077186 + Lx9 LINE L1 5238 5852 -304 2 1074 1697 309 74 21 chr12 64180645 64181402 -57076128 + Lx9 LINE L1 6418 7214 -430 2 1074 594 0 0 0 chr12 64181623 64181689 -57075841 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1074 24 32 0 0 chr12 64181944 64181975 -57075555 + AT_rich Low_complexity Low_complexity 1 31 0 2 1074 22 0 0 0 chr12 64182036 64182058 -57075472 + AT_rich Low_complexity Low_complexity 1 22 0 2 1074 182 156 22 0 chr12 64182151 64182196 -57075334 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 2 1074 27 0 0 0 chr12 64182600 64182627 -57074903 + AT_rich Low_complexity Low_complexity 1 27 0 2 1074 1182 255 102 25 chr12 64182664 64183066 -57074464 - Lx6 LINE L1 -34 7426 6994 2 1074 386 204 0 10 chr12 64183514 64183613 -57073917 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 2 1074 1235 154 0 39 chr12 64183713 64183943 -57073587 - Lx2 LINE L1 0 6997 6777 2 1074 2315 159 3 13 chr12 64183946 64184329 -57073201 - Lx2 LINE L1 -355 6642 6264 2 1074 4352 133 3 0 chr12 64184326 64184963 -57072567 - L1VL4 LINE L1 -5471 831 193 2 1074 12734 86 4 1 chr12 64185001 64187372 -57070158 - L1Md_F2 LINE L1 0 6582 4203 2 1074 369 62 0 0 chr12 64187373 64187421 -57070109 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1074 420 382 0 0 chr12 64188091 64188256 -57069274 + (TG)n Simple_repeat Simple_repeat 2 166 0 2 1074 22 0 0 0 chr12 64188516 64188538 -57068992 + AT_rich Low_complexity Low_complexity 1 22 0 2 1074 709 230 43 12 chr12 64188755 64188964 -57068566 - Lx4B LINE L1 -8 7050 6826 2 1074 593 68 0 22 chr12 64188967 64189057 -57068473 - L1_Mus2 LINE L1 0 6566 6479 2 1074 3726 218 48 22 chr12 64189049 64189942 -57067588 - Lx4B LINE L1 -218 6840 5925 2 1074 253 154 63 13 chr12 64190097 64190176 -57067354 + (TTTAA)n Simple_repeat Simple_repeat 4 86 0 2 1074 767 347 23 2 chr12 64190630 64191058 -57066472 - L1M2 LINE L1 -526 5774 5338 2 1074 3156 229 50 11 chr12 64191064 64191782 -57065748 + Lx5 LINE L1 6305 7050 0 2 1074 21 36 0 0 chr12 64191782 64191810 -57065720 + AT_rich Low_complexity Low_complexity 1 28 0 2 1074 302 224 48 18 chr12 64191852 64191962 -57065568 - L1M2 LINE L1 -912 5231 5099 2 1074 293 378 42 8 chr12 64193609 64193729 -57063801 + RSINE1 SINE B4 2 125 -40 2 1074 360 0 0 0 chr12 64193731 64193771 -57063759 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1074 230 0 33 0 chr12 64193771 64193800 -57063730 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1074 306 169 229 0 chr12 64193921 64194004 -57063526 - Lx9 LINE L1 -7 7637 7536 2 1074 368 130 14 0 chr12 64194004 64194073 -57063457 + (TC)n Simple_repeat Simple_repeat 2 71 0 2 1074 372 150 0 0 chr12 64194120 64194180 -57063350 + RMER20B LTR ERVK 1 60 -567 2 1074 778 322 66 28 chr12 64194204 64194839 -57062691 - L1MA6 LINE L1 -114 6186 5528 2 1074 225 119 0 0 chr12 64194882 64194924 -57062606 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1074 4378 106 12 9 chr12 64194980 64195663 -57061867 - L1_Mur1 LINE L1 -428 5458 4774 2 1074 797 236 22 0 chr12 64196295 64196473 -57061057 + URR1A DNA MER1_type 45 226 0 2 1074 328 361 58 72 chr12 64197135 64197344 -57060186 - MLT1B LTR MaLR 0 390 180 2 1074 984 215 14 14 chr12 64197344 64197566 -57059964 + URR1A DNA MER1_type 5 226 0 2 1074 328 361 58 72 chr12 64197566 64197717 -57059813 - MLT1B LTR MaLR -211 179 35 2 1074 291 177 0 0 chr12 64198045 64198107 -57059423 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1074 1220 316 60 26 chr12 64198133 64198937 -57058593 - Lx9 LINE L1 -160 7484 6625 2 1074 2414 221 89 74 chr12 64198937 64199690 -57057840 + RLTR40 LTR ERVK 43 806 -11 2 1074 292 278 91 25 chr12 64199700 64199899 -57057631 - Lx9 LINE L1 -1180 6464 6253 2 1074 882 179 6 0 chr12 64199968 64200141 -57057389 + L1_Rod LINE L1 5659 5832 -15 2 1074 1350 297 90 34 chr12 64200556 64201391 -57056139 - L1MC1 LINE L1 -105 6228 5347 3 1074 6881 183 12 6 chr12 64201540 64203237 -57054293 - Lx4B LINE L1 -199 6859 5149 3 1074 525 207 17 0 chr12 64203236 64203352 -57054178 - Lx4B LINE L1 -1428 4449 4332 3 1074 8694 194 34 62 chr12 64203336 64205055 -57052475 - Lx4B LINE L1 -2334 3543 1908 3 1074 269 0 56 0 chr12 64205055 64205091 -57052439 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 1074 8694 194 34 62 chr12 64205091 64205720 -57051810 - Lx4B LINE L1 -3970 1907 1269 3 1074 189 0 0 0 chr12 64205720 64205741 -57051789 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1074 8694 238 238 48 chr12 64205741 64206097 -57051433 - Lx4B LINE L1 -4609 1268 836 3 1074 207 69 0 0 chr12 64206346 64206375 -57051155 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1074 21 57 0 0 chr12 64206680 64206715 -57050815 + AT_rich Low_complexity Low_complexity 1 35 0 3 1074 329 360 31 21 chr12 64206773 64206983 -57050547 + B3A SINE B2 3 206 -10 3 1074 195 139 0 0 chr12 64207113 64207149 -57050381 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1074 22 80 0 0 chr12 64207287 64207337 -57050193 + AT_rich Low_complexity Low_complexity 1 50 0 3 1074 297 301 28 29 chr12 64207396 64207512 -57050018 - PB1D7 SINE Alu -1 119 7 3 1074 220 148 48 36 chr12 64207577 64207661 -57049869 + (TA)n Simple_repeat Simple_repeat 2 86 0 3 1074 23 54 0 0 chr12 64207844 64207881 -57049649 + AT_rich Low_complexity Low_complexity 1 37 0 3 1074 387 0 0 0 chr12 64208038 64208081 -57049449 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1074 31 68 0 0 chr12 64208185 64208244 -57049286 + AT_rich Low_complexity Low_complexity 1 59 0 3 1074 1353 311 31 45 chr12 64209401 64209976 -57047554 + Lx8 LINE L1 6906 7472 -1 3 1074 718 83 4 0 chr12 64210514 64210612 -57046918 + L1Md_F2 LINE L1 5499 5615 -569 3 1074 8087 46 1 4 chr12 64210612 64211611 -57045919 + L1Md_F2 LINE L1 5587 6582 0 3 1074 189 74 0 0 chr12 64212091 64212118 -57045412 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1074 732 149 6 11 chr12 64212493 64212669 -57044861 + (CA)n Simple_repeat Simple_repeat 2 176 0 3 1074 2917 89 10 0 chr12 64213823 64214240 -57043290 - BGLII LTR ERVK 0 421 1 3 1074 4723 252 80 17 chr12 64214409 64214690 -57042840 - Lx7 LINE L1 -5 7691 7398 3 1074 504 32 0 0 chr12 64214690 64214752 -57042778 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1074 4723 252 80 17 chr12 64214752 64215404 -57042126 - Lx7 LINE L1 -299 7397 6705 3 1074 261 0 0 0 chr12 64215404 64215433 -57042097 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1074 4723 252 80 17 chr12 64215433 64215929 -57041601 - Lx7 LINE L1 -992 6704 6171 3 1074 1953 230 97 22 chr12 64215937 64216605 -57040925 - Lx7 LINE L1 0 5880 5163 3 1074 222 118 0 0 chr12 64216612 64216646 -57040884 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1074 2299 289 77 3 chr12 64216648 64217618 -57039912 - Lx7 LINE L1 -4487 1393 340 3 1074 486 334 67 24 chr12 64218046 64218374 -57039156 - HERV16-int LTR ERVL -4580 416 75 3 1074 486 120 0 0 chr12 64218376 64218451 -57039079 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 3 1074 507 299 45 27 chr12 64219353 64219573 -57037957 - Lx8 LINE L1 -103 7370 7147 3 1074 481 272 241 24 chr12 64219671 64219878 -57037652 + RLTR28B LTR ERVL 7 258 -223 3 1074 495 208 0 70 chr12 64220076 64220205 -57037325 + URR1B DNA MER1_type 106 225 0 3 134 38358 9 1 1 chr12 64220270 64226456 -57031074 + L1Md_A LINE L1 1 5586 -297 3 1075 8980 4 0 0 chr12 64226456 64227452 -57030078 + L1Md_A LINE L1 5587 6582 0 3 1075 1674 243 53 0 chr12 64227453 64227827 -57029703 + MTC LTR MaLR 28 421 0 3 1075 180 0 0 0 chr12 64229205 64229225 -57028305 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 1075 23 33 0 0 chr12 64229325 64229355 -57028175 + AT_rich Low_complexity Low_complexity 1 30 0 3 1075 2157 262 4 12 chr12 64229386 64229877 -57027653 - Lx5 LINE L1 -3 7047 6561 3 1075 1573 157 0 0 chr12 64229876 64230111 -57027419 + Lx5 LINE L1 6260 6494 -556 3 1075 2225 50 0 7 chr12 64230275 64230558 -57026972 + L1Md_F2 LINE L1 6295 6575 -7 3 1075 405 0 0 0 chr12 64230739 64230784 -57026746 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1075 264 331 14 0 chr12 64231001 64231149 -57026381 - L1MA8 LINE L1 -331 5960 5811 3 1075 414 0 0 0 chr12 64231162 64231208 -57026322 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1075 231 274 60 0 chr12 64231361 64231445 -57026085 - L1MA8 LINE L1 -692 5599 5511 3 1075 382 256 90 26 chr12 64231526 64231715 -57025815 + L1MA6 LINE L1 6095 6295 -5 3 1075 24 32 0 0 chr12 64231764 64231795 -57025735 + AT_rich Low_complexity Low_complexity 1 31 0 3 1075 24 0 0 0 chr12 64231906 64231930 -57025600 + AT_rich Low_complexity Low_complexity 1 24 0 3 1075 1379 205 53 34 chr12 64232051 64232234 -57025296 + RMER17C LTR ERVK 25 213 -197 3 1075 762 84 0 0 chr12 64232234 64232341 -57025189 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 1075 1379 205 53 34 chr12 64232341 64232536 -57024994 + RMER17C LTR ERVK 214 410 0 3 1075 8715 114 18 55 chr12 64233335 64233442 -57024088 - RLTR22_Mur LTR ERVK -395 1453 1349 3 1075 351 0 0 0 chr12 64233442 64233481 -57024049 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1075 8715 114 18 55 chr12 64233481 64234859 -57022671 - RLTR22_Mur LTR ERVK -500 1348 23 3 1075 391 324 69 0 chr12 64234880 64235025 -57022505 - Lx8 LINE L1 -398 7075 6921 3 1075 21 0 0 0 chr12 64235100 64235121 -57022409 + AT_rich Low_complexity Low_complexity 1 21 0 3 1075 464 305 76 0 chr12 64235361 64235492 -57022038 + B3A SINE B2 5 145 -53 3 1075 558 98 0 0 chr12 64235494 64235576 -57021954 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1075 447 226 0 0 chr12 64235894 64236027 -57021503 + (TA)n Simple_repeat Simple_repeat 1 133 0 3 1075 279 0 0 0 chr12 64236030 64236061 -57021469 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1075 26 0 0 0 chr12 64236359 64236385 -57021145 + AT_rich Low_complexity Low_complexity 1 26 0 3 1075 264 276 85 17 chr12 64236599 64236717 -57020813 + L2a LINE L2 3301 3426 0 3 1075 323 384 14 7 chr12 64236855 64236994 -57020536 + Tigger7 DNA MER2_type 10 149 -2342 3 1075 326 315 109 20 chr12 64237111 64237312 -57020218 + Tigger7 DNA MER2_type 2142 2360 -131 3 1075 296 269 102 0 chr12 64237538 64237646 -57019884 + Lx5 LINE L1 5741 5859 -1191 3 1075 25 0 0 0 chr12 64238154 64238179 -57019351 + AT_rich Low_complexity Low_complexity 1 25 0 3 1075 1398 28 0 0 chr12 64238401 64238564 -57018966 + L1_Mm LINE L1 5426 5615 -568 3 1075 7996 56 0 0 chr12 64238564 64239560 -57017970 + L1Md_T LINE L1 5587 6582 0 3 1075 624 244 11 28 chr12 64239560 64239577 -57017953 + L1_Mm LINE L1 5616 5631 -552 3 1075 520 184 470 0 chr12 64239569 64239754 -57017776 - L1_Mur3 LINE L1 -2533 3347 3076 3 1075 294 50 0 0 chr12 64239754 64239794 -57017736 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1075 24 32 0 0 chr12 64239803 64239834 -57017696 + AT_rich Low_complexity Low_complexity 1 31 0 3 1075 289 387 22 0 chr12 64240139 64240276 -57017254 - B1F SINE Alu -9 140 1 3 1075 23 54 0 0 chr12 64240686 64240723 -57016807 + AT_rich Low_complexity Low_complexity 1 37 0 3 1075 1772 239 0 32 chr12 64240886 64241326 -57016204 + L1_Mur3 LINE L1 5131 5556 -324 3 1075 931 79 0 0 chr12 64242104 64242231 -57015299 + B1_Mus1 SINE Alu 1 127 -21 3 1075 1460 0 0 20 chr12 64242237 64242486 -57015044 + (GAA)n Simple_repeat Simple_repeat 1 243 0 3 1075 21 0 0 0 chr12 64243131 64243152 -57014378 + AT_rich Low_complexity Low_complexity 1 21 0 3 1075 755 10 0 0 chr12 64243337 64243433 -57014097 - L1Md_T LINE L1 -1 6581 6486 3 1075 618 62 2 5 chr12 64244750 64244851 -57012679 - L1_Mus3 LINE L1 -606 6030 5931 3 1075 6916 118 6 28 chr12 64244942 64246016 -57011514 - L1_Mus3 LINE L1 -2 6636 5587 3 1075 6613 41 5 4 chr12 64246039 64246854 -57010676 - L1Md_F3 LINE L1 -14 6570 5755 3 1075 231 113 57 0 chr12 64246975 64247028 -57010502 + GA-rich Low_complexity Low_complexity 1 56 0 3 1075 535 254 13 47 chr12 64247030 64247179 -57010351 - ORR1C1 LTR MaLR -192 186 43 3 1075 338 317 10 10 chr12 64247180 64247282 -57010248 - Lx8 LINE L1 -450 7023 6922 3 1075 6951 139 12 9 chr12 64247325 64248885 -57008645 - Lx LINE L1 0 6654 5088 3 1075 9126 172 12 24 chr12 64248876 64249913 -57007617 + L1_Mur1 LINE L1 2610 3637 -2249 3 1075 3302 38 5 0 chr12 64249913 64250307 -57007223 - MTA_Mm LTR MaLR 0 396 1 3 1075 9126 172 12 24 chr12 64250307 64250913 -57006617 + L1_Mur1 LINE L1 3638 4241 -1645 3 1075 192 40 0 0 chr12 64250913 64250938 -57006592 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1075 952 131 0 0 chr12 64250938 64251075 -57006455 - B1_Mus1 SINE Alu -10 138 2 3 1075 9126 172 12 24 chr12 64251075 64251091 -57006439 + L1_Mur1 LINE L1 4242 4253 -1633 3 1075 243 0 0 0 chr12 64251091 64251118 -57006412 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1075 9126 172 12 24 chr12 64251118 64251315 -57006215 + L1_Mur1 LINE L1 4254 4446 -1440 3 1075 295 380 15 15 chr12 64251304 64251499 -57006031 - Lx8 LINE L1 -579 6894 6700 3 1075 286 350 48 44 chr12 64251518 64251745 -57005785 + Lx8 LINE L1 7102 7329 -144 3 1075 34 55 0 0 chr12 64251825 64251880 -57005650 + AT_rich Low_complexity Low_complexity 1 55 0 3 1075 4249 126 19 73 chr12 64252397 64253191 -57004339 + Lx LINE L1 5904 6654 0 3 1075 276 100 0 0 chr12 64253434 64253474 -57004056 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1075 326 23 0 23 chr12 64253549 64253593 -57003937 + (TAA)n Simple_repeat Simple_repeat 2 44 0 3 1075 1526 305 81 12 chr12 64253597 64254177 -57003353 - Lx9 LINE L1 -662 6982 6363 3 1075 201 74 0 0 chr12 64254231 64254258 -57003272 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1075 576 214 0 17 chr12 64254258 64254434 -57003096 + (CATATA)n Simple_repeat Simple_repeat 4 176 0 3 1075 281 30 0 0 chr12 64254434 64254467 -57003063 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1075 1503 236 73 19 chr12 64254479 64254847 -57002683 - MTC LTR MaLR -9 412 25 3 1075 23619 167 11 81 chr12 64254894 64259049 -56998481 + L1_Mus3 LINE L1 465 4206 -1677 3 1075 8439 34 0 0 chr12 64259049 64260044 -56997486 + L1Md_T LINE L1 5588 6582 0 3 1075 23619 157 9 91 chr12 64260044 64260502 -56997028 + L1_Mus3 LINE L1 4207 4659 -1224 3 1075 950 117 7 7 chr12 64260502 64260639 -56996891 + B1_Mus1 SINE Alu 1 138 -10 3 1075 183 42 0 0 chr12 64260639 64260663 -56996867 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 3 1075 23619 132 10 44 chr12 64260671 64262642 -56994888 + L1_Mus3 LINE L1 4660 6630 -8 3 1075 280 275 63 48 chr12 64263261 64263387 -56994143 - Lx9 LINE L1 -794 6850 6723 3 1075 3653 80 16 0 chr12 64263375 64263878 -56993652 - L1_Mur1 LINE L1 -346 5540 5030 3 1075 4888 117 32 15 chr12 64263876 64264668 -56992862 + Lx3_Mus LINE L1 5682 6486 -523 3 1075 596 348 41 11 chr12 64264706 64264976 -56992554 - MTD LTR MaLR -140 279 2 3 1075 897 308 33 50 chr12 64264976 64265506 -56992024 - Lx9 LINE L1 -1687 5957 5403 3 1075 1234 117 0 11 chr12 64265588 64265770 -56991760 - L1_Mm LINE L1 -325 5558 5379 3 1075 2491 125 17 19 chr12 64265772 64265984 -56991546 + L1_Mus4 LINE L1 6213 6429 -207 3 1075 4210 116 31 155 chr12 64265984 64266906 -56990624 + RLTR13C2 LTR ERVK 1 808 0 4 1075 2491 125 17 19 chr12 64266906 64267110 -56990420 + L1_Mus4 LINE L1 6430 6628 -8 3 1075 2955 233 23 120 chr12 64267221 64267686 -56989844 + L1_Mur3 LINE L1 2125 2589 -3288 4 1075 351 0 0 0 chr12 64267686 64267725 -56989805 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1075 2955 233 23 120 chr12 64267725 64268371 -56989159 + L1_Mur3 LINE L1 2590 3129 -2748 4 1075 3470 216 118 15 chr12 64268385 64269334 -56988196 + L1_Mur3 LINE L1 4648 5694 -186 4 1075 38412 17 14 0 chr12 64269334 64274694 -56982836 + Lx6 LINE L1 226 5586 -297 4 1075 8958 5 0 0 chr12 64274694 64275690 -56981840 + L1Md_A LINE L1 5587 6582 0 4 1075 38412 219 92 6 chr12 64275690 64276307 -56981223 + Lx6 LINE L1 5587 6582 -878 4 1075 2348 183 37 21 chr12 64276307 64276826 -56980704 + RLTR11A2 LTR ERVK 1 527 0 4 1075 1406 315 88 10 chr12 64276826 64276966 -56980564 + Lx6 LINE L1 6361 6451 -599 4 1075 827 293 17 41 chr12 64276963 64277258 -56980272 + Lx6 LINE L1 7169 7456 -4 4 1075 1845 271 46 34 chr12 64277257 64277842 -56979688 + Lx7 LINE L1 6825 7416 -280 4 1075 222 37 0 0 chr12 64277842 64277869 -56979661 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 1075 361 191 9 9 chr12 64277869 64277975 -56979555 + (CA)n Simple_repeat Simple_repeat 2 107 0 4 1075 381 43 0 0 chr12 64277976 64278023 -56979507 + (TATG)n Simple_repeat Simple_repeat 2 48 0 4 1075 351 0 0 0 chr12 64278188 64278227 -56979303 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1075 603 40 0 0 chr12 64278227 64278301 -56979229 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1075 417 326 39 6 chr12 64278395 64278574 -56978956 + Tigger7 DNA MER2_type 2275 2459 -32 4 1075 1761 319 50 57 chr12 64279632 64280674 -56976856 + Lx5 LINE L1 6060 7458 -2 4 1075 286 247 79 0 chr12 64280919 64280969 -56976561 + Lx9 LINE L1 6970 7022 -622 4 1075 306 0 0 0 chr12 64280969 64281003 -56976527 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 4 1075 286 247 79 0 chr12 64281003 64281041 -56976489 + Lx9 LINE L1 7023 7064 -580 4 1075 1213 271 83 20 chr12 64281067 64281337 -56976193 + Lx9 LINE L1 7107 7393 -251 4 1075 6329 89 26 10 chr12 64281337 64282251 -56975279 - RLTR13B3 LTR ERVK 0 929 1 4 1075 1213 271 83 20 chr12 64282251 64282485 -56975045 + Lx9 LINE L1 7394 7643 -1 4 1075 1436 162 4 0 chr12 64282556 64282784 -56974746 + Lx LINE L1 6082 6310 -344 4 1075 2120 137 127 30 chr12 64282793 64283162 -56974368 - RLTR44A LTR ERVK 0 405 1 4 1075 5217 60 12 10 chr12 64283162 64283832 -56973698 - RLTR44-int LTR ERVK 0 2812 2142 4 1075 1142 324 42 41 chr12 64284038 64284968 -56972562 - RLTR44-int LTR ERVK -1155 5326 4320 4 1075 328 274 30 30 chr12 64285364 64285496 -56972034 - RLTR44-int LTR ERVK -3805 4412 4281 4 1075 803 280 30 19 chr12 64285554 64285993 -56971537 - RLTR44-int LTR ERVK -3518 3303 2550 4 1075 3646 246 45 45 chr12 64286091 64287872 -56969658 - RLTR44-int LTR ERVK -686 2126 659 4 1075 513 188 69 0 chr12 64288052 64288153 -56969377 - RLTR44-int LTR ERVK -1831 981 874 4 1075 310 148 0 69 chr12 64288165 64288223 -56969307 - RLTR44-int LTR ERVK -2758 54 1 4 1075 1956 151 130 30 chr12 64288223 64288591 -56968939 - RLTR44A LTR ERVK 0 405 1 4 1075 1655 202 12 3 chr12 64288593 64288921 -56968609 + Lx LINE L1 6316 6646 -8 4 1075 794 130 7 0 chr12 64289002 64289156 -56968374 + (CA)n Simple_repeat Simple_repeat 2 156 0 4 1075 375 73 0 0 chr12 64289180 64289235 -56968295 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1075 633 27 0 0 chr12 64289432 64289507 -56968023 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 1075 258 95 0 0 chr12 64289518 64289560 -56967970 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1075 232 366 135 24 chr12 64289677 64289803 -56967727 - B4 SINE B4 -143 149 10 4 1075 5985 209 51 12 chr12 64291176 64292723 -56964807 - Lx3C LINE L1 -2 6974 5411 4 1075 21 100 0 0 chr12 64293565 64293635 -56963895 + AT_rich Low_complexity Low_complexity 1 70 0 4 1075 644 278 21 98 chr12 64294410 64294645 -56962885 + RMER20B LTR ERVK 386 602 -25 4 1075 8556 123 54 7 chr12 64296644 64298407 -56959123 + Lx3A LINE L1 4414 6240 -741 4 1075 4034 122 10 141 chr12 64298407 64299338 -56958192 + RMER17D2 LTR ERVK 1 809 0 4 1075 8556 123 20 23 chr12 64299338 64300070 -56957460 + Lx3A LINE L1 6241 6974 -7 4 1075 3131 256 41 40 chr12 64300586 64301155 -56956375 + Lx9 LINE L1 4705 5295 -552 4 1075 234 0 0 0 chr12 64301155 64301181 -56956349 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1075 3131 265 34 40 chr12 64301181 64301981 -56955549 + Lx9 LINE L1 5296 6096 -1548 4 1075 1515 131 14 39 chr12 64302132 64302417 -56955113 + Lx2B LINE L1 6718 6995 -5 4 1075 180 0 0 0 chr12 64302452 64302472 -56955058 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1075 558 71 0 0 chr12 64302472 64302555 -56954975 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1075 189 171 0 0 chr12 64303465 64303500 -56954030 + (CATA)n Simple_repeat Simple_repeat 1 35 0 4 1075 236 327 56 28 chr12 64303744 64303851 -56953679 - MER82 DNA MER2_type -536 117 8 4 1075 21 0 0 0 chr12 64304059 64304080 -56953450 + AT_rich Low_complexity Low_complexity 1 21 0 4 1075 3692 230 56 48 chr12 64305578 64306630 -56950900 - Lx2B LINE L1 -5 6995 5936 4 1075 2924 206 18 30 chr12 64306628 64307340 -56950190 + Lx2B LINE L1 5213 5921 -1079 4 1075 25495 108 30 27 chr12 64307360 64311186 -56946344 + L1_Mur1 LINE L1 366 4535 -1351 4 1075 1120 66 0 0 chr12 64311186 64311323 -56946207 + B1_Mus2 SINE Alu 2 138 -9 4 1075 383 0 0 21 chr12 64311323 64311371 -56946159 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1075 25495 101 11 31 chr12 64311371 64311667 -56945863 + L1_Mur1 LINE L1 4536 4739 -1147 4 1075 1124 75 0 7 chr12 64311667 64311815 -56945715 + B1_Mm SINE Alu 1 147 0 4 1075 25495 101 11 31 chr12 64311815 64311829 -56945701 + L1_Mur1 LINE L1 4740 4740 -1146 4 1075 210 37 0 0 chr12 64311829 64311856 -56945674 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1075 25495 101 11 31 chr12 64311856 64312338 -56945192 + L1_Mur1 LINE L1 4740 5210 -676 4 1075 30 27 0 0 chr12 64313005 64313042 -56944488 + AT_rich Low_complexity Low_complexity 1 37 0 4 1075 387 0 0 0 chr12 64313273 64313316 -56944214 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1075 558 0 0 0 chr12 64313316 64313377 -56944153 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1075 449 346 38 13 chr12 64314974 64315132 -56942398 + B3A SINE B2 2 163 -35 4 1075 240 123 92 0 chr12 64315142 64315207 -56942323 + CT-rich Low_complexity Low_complexity 3 73 0 4 1075 356 286 41 51 chr12 64315324 64315519 -56942011 + L1MA8 LINE L1 5429 5621 -691 4 1075 252 308 89 0 chr12 64315515 64315661 -56941869 + L1MA8 LINE L1 5759 5917 -374 4 1075 1380 176 104 40 chr12 64315751 64316306 -56941224 - L1_Mur1 LINE L1 -4467 1410 806 4 1075 186 71 0 0 chr12 64316527 64316555 -56940975 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 4 1075 497 208 115 39 chr12 64316561 64316691 -56940839 - B1_Mus2 SINE Alu 0 147 8 4 1075 196 100 0 91 chr12 64316814 64316869 -56940661 + T-rich Low_complexity Low_complexity 3 52 0 4 1075 396 0 0 0 chr12 64318316 64318360 -56939170 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 4 1075 21 0 0 0 chr12 64320553 64320574 -56936956 + AT_rich Low_complexity Low_complexity 1 21 0 4 1075 507 45 0 0 chr12 64321769 64321835 -56935695 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1075 1007 122 0 11 chr12 64322043 64322225 -56935305 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1075 2758 168 78 33 chr12 64322794 64323342 -56934188 + MT2B LTR ERVL 1 573 -28 4 1075 186 43 0 0 chr12 64323366 64323389 -56934141 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4 1075 734 193 129 0 chr12 64323391 64323562 -56933968 - Lx LINE L1 -14 6640 6448 4 1075 4811 103 3 17 chr12 64323766 64324487 -56933043 - L1_Mus1 LINE L1 -1 6566 5856 4 1075 5959 89 29 1 chr12 64324500 64325903 -56931627 - L1_Mus1 LINE L1 0 6567 5110 4 1075 22 0 0 0 chr12 64325939 64325961 -56931569 + AT_rich Low_complexity Low_complexity 1 22 0 4 1075 225 0 0 0 chr12 64325970 64325995 -56931535 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 4 1075 8603 133 22 5 chr12 64325999 64327574 -56929956 - Lx3A LINE L1 -5 6976 5391 4 1075 23 0 0 0 chr12 64327736 64327759 -56929771 + AT_rich Low_complexity Low_complexity 1 23 0 4 1075 508 146 39 5 chr12 64328073 64328289 -56929241 + (TA)n Simple_repeat Simple_repeat 1 223 0 4 1075 510 17 0 0 chr12 64329832 64329891 -56927639 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1075 275 253 0 0 chr12 64329905 64329988 -56927542 + L1M2 LINE L1 4419 4501 -1642 4 1075 912 123 6 18 chr12 64330929 64331095 -56926435 + (GAAAA)n Simple_repeat Simple_repeat 2 165 0 4 1075 1016 96 0 0 chr12 64331099 64331234 -56926296 + B1_Mus1 SINE Alu 1 135 -13 4 1075 198 0 0 0 chr12 64331236 64331258 -56926272 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 4 1075 392 68 34 0 chr12 64331260 64331319 -56926211 + (GGGA)n Simple_repeat Simple_repeat 3 63 0 4 1075 786 117 0 0 chr12 64331319 64331439 -56926091 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 4 1075 1016 111 13 0 chr12 64331738 64331891 -56925639 + URR1A DNA MER1_type 72 226 0 4 1075 4714 126 104 6 chr12 64332875 64333700 -56923830 + RMER17A2 LTR ERVK 1 906 0 4 1075 5037 88 27 4 chr12 64333739 64334469 -56923061 + Lx3_Mus LINE L1 6263 7009 0 4 1075 308 337 60 18 chr12 64334472 64334638 -56922892 + L1MD LINE L1 4012 4184 -1962 4 1075 21 36 0 0 chr12 64334990 64335018 -56922512 + AT_rich Low_complexity Low_complexity 1 28 0 4 1075 271 136 15 0 chr12 64335091 64335157 -56922373 - MT2A LTR ERVL 0 533 467 4 1075 33 90 0 0 chr12 64335205 64335294 -56922236 + AT_rich Low_complexity Low_complexity 1 89 0 4 1075 540 0 0 0 chr12 64335374 64335434 -56922096 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1075 1363 233 39 96 chr12 64335477 64335861 -56921669 - MT2A LTR ERVL -170 363 2 4 1075 631 268 148 54 chr12 64336487 64336818 -56920712 - RMER13A LTR ERVK -400 460 99 4 1075 576 191 30 41 chr12 64337723 64337892 -56919638 - Lx9 LINE L1 -2 7642 7476 4 1075 3593 164 49 20 chr12 64337971 64338946 -56918584 - L1_Mur2 LINE L1 -3870 2007 939 4 1075 643 136 73 0 chr12 64338956 64339109 -56918421 - Lx2 LINE L1 0 6997 6817 4 1075 498 180 71 18 chr12 64339119 64339232 -56918298 - L1_Mur2 LINE L1 -6152 934 816 4 1075 409 319 44 41 chr12 64340024 64340364 -56917166 - L1MA4 LINE L1 -370 5930 5590 4 1075 997 278 95 9 chr12 64340869 64341196 -56916334 - Lx7 LINE L1 -1742 5954 5600 4 1075 233 287 11 0 chr12 64341269 64341356 -56916174 - Lx7 LINE L1 -845 5035 4948 4 1075 728 287 148 85 chr12 64341357 64341818 -56915712 - RLTR19 LTR ERVK 0 499 10 4 1075 490 292 152 15 chr12 64342167 64342365 -56915165 + MT2A LTR ERVL 6 230 -303 4 1075 439 306 37 7 chr12 64342397 64342532 -56914998 + MT2A LTR ERVL 323 461 -72 4 1075 1759 186 14 25 chr12 64344050 64344403 -56913127 + RLTR14 LTR ERV1 3 351 -31 4 1075 24 53 0 0 chr12 64344850 64344888 -56912642 + AT_rich Low_complexity Low_complexity 1 38 0 4 1075 7421 149 25 10 chr12 64345961 64348115 -56909415 + Lx LINE L1 4461 6654 0 4 1075 919 144 12 0 chr12 64348200 64348367 -56909163 + GA-rich Low_complexity Low_complexity 3 171 0 4 1075 1200 166 36 9 chr12 64348367 64348586 -56908944 + MTC LTR MaLR 197 421 0 4 1075 1433 176 92 10 chr12 64348654 64348958 -56908572 - ORR1B1 LTR MaLR 0 394 66 4 1075 255 247 48 24 chr12 64348991 64349074 -56908456 + L1MB3 LINE L1 6037 6121 -62 4 1075 228 255 178 78 chr12 64349245 64349422 -56908108 - Lx7 LINE L1 -122 7574 7381 4 1075 402 21 0 0 chr12 64349422 64349469 -56908061 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1075 228 255 178 78 chr12 64349469 64349572 -56907958 - Lx7 LINE L1 -316 7380 7267 4 1075 2961 273 62 30 chr12 64349568 64350602 -56906928 - Lx7 LINE L1 -1048 6648 5610 4 1075 244 275 0 101 chr12 64350567 64350656 -56906874 + L1MC1 LINE L1 6029 6108 -225 5 1075 591 259 36 0 chr12 64350662 64350828 -56906702 - Lx9 LINE L1 -492 7152 6981 5 1075 619 198 281 0 chr12 64350825 64351064 -56906466 + Lx9 LINE L1 7338 7643 -1 5 1075 30 0 0 0 chr12 64351244 64351274 -56906256 + AT_rich Low_complexity Low_complexity 1 30 0 5 1075 192 125 0 0 chr12 64351483 64351515 -56906015 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1075 618 272 62 23 chr12 64352195 64352372 -56905158 - B3 SINE B2 0 216 33 5 1075 25 51 0 0 chr12 64352447 64352486 -56905044 + AT_rich Low_complexity Low_complexity 1 39 0 5 1075 506 346 13 0 chr12 64352597 64352753 -56904777 - RSINE1 SINE B4 -2 163 6 5 1075 21 57 0 0 chr12 64352909 64352944 -56904586 + AT_rich Low_complexity Low_complexity 1 35 0 5 1075 327 275 0 0 chr12 64353466 64353535 -56903995 - ID_B1 SINE B4 -2 222 154 5 1075 22 35 0 0 chr12 64354076 64354105 -56903425 + AT_rich Low_complexity Low_complexity 1 29 0 5 1075 1369 249 39 37 chr12 64354146 64354529 -56903001 + ORR1C2 LTR MaLR 1 384 0 5 1075 330 305 64 29 chr12 64354587 64354759 -56902771 - B3A SINE B2 -16 182 5 5 1075 540 269 7 21 chr12 64354809 64354953 -56902577 - B1_Mur1 SINE Alu -1 148 7 5 1075 186 133 0 0 chr12 64355434 64355464 -56902066 + (GAA)n Simple_repeat Simple_repeat 2 31 0 5 1076 198 0 0 0 chr12 64356929 64356951 -56900579 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1076 761 166 14 7 chr12 64357279 64357422 -56900108 + Lx3B LINE L1 6408 6557 -443 5 1076 623 381 87 5 chr12 64357681 64358127 -56899403 - Lx9 LINE L1 -794 6850 6368 5 1076 505 247 95 65 chr12 64358166 64358335 -56899195 + MTD LTR MaLR 3 176 -243 5 1076 6054 44 0 8 chr12 64358457 64359212 -56898318 - L1Md_T LINE L1 -1 6581 5833 5 1076 663 306 85 43 chr12 64359247 64359705 -56897825 + Lx9 LINE L1 6958 7428 -216 5 1076 201 121 0 0 chr12 64359705 64359738 -56897792 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1076 663 306 85 43 chr12 64359738 64359794 -56897736 + Lx9 LINE L1 7429 7493 -151 5 1076 229 204 0 20 chr12 64360046 64360096 -56897434 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1076 1781 50 80 0 chr12 64360660 64360899 -56896631 - L1Md_F2 LINE L1 0 6582 6325 5 1076 1011 111 7 0 chr12 64360926 64361070 -56896460 + B1_Mus2 SINE Alu 3 147 0 5 1076 355 134 24 0 chr12 64361070 64361152 -56896378 + A-rich Low_complexity Low_complexity 6 89 0 5 1076 28 61 0 0 chr12 64361709 64361758 -56895772 + AT_rich Low_complexity Low_complexity 1 49 0 5 1076 265 283 119 48 chr12 64362191 64362317 -56895213 - MLT1D LTR MaLR -10 495 361 5 1076 961 232 0 58 chr12 64362332 64362556 -56894974 - ORR1C2 LTR MaLR 0 384 174 5 1076 764 224 85 25 chr12 64362587 64362825 -56894705 - ORR1C2 LTR MaLR -135 232 2 5 1076 25747 49 2 3 chr12 64363856 64365450 -56892080 - L1Md_F3 LINE L1 0 6584 5052 5 1076 5582 16 0 0 chr12 64365450 64366089 -56891441 - L1Md_A LINE L1 0 6582 5944 5 1076 25747 68 5 6 chr12 64366089 64368660 -56888870 - L1Md_F3 LINE L1 -832 5051 2466 5 1076 955 195 6 0 chr12 64368661 64368835 -56888695 + BGLII_B LTR ERVK 267 441 0 5 1076 267 152 0 0 chr12 64369499 64369545 -56887985 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1076 28 29 0 0 chr12 64369662 64369697 -56887833 + AT_rich Low_complexity Low_complexity 1 35 0 5 1076 264 364 67 8 chr12 64370116 64370235 -56887295 + B3 SINE B2 2 127 -89 5 1076 3475 184 145 65 chr12 64370524 64370847 -56886683 + RLTR25A LTR ERVK 1 325 -778 5 1076 252 0 0 0 chr12 64370847 64370875 -56886655 + (TA)n Simple_repeat Simple_repeat 1 28 0 5 1076 3475 184 145 65 chr12 64370875 64371348 -56886182 + RLTR25A LTR ERVK 326 890 -213 5 1076 357 109 0 0 chr12 64371348 64371403 -56886127 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1076 3475 184 145 65 chr12 64371403 64371570 -56885960 + RLTR25A LTR ERVK 891 1041 -62 5 1076 340 125 16 0 chr12 64372112 64372176 -56885354 + RLTR25A LTR ERVK 1039 1103 0 5 1076 258 32 0 0 chr12 64372411 64372442 -56885088 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1076 231 36 0 0 chr12 64372443 64372471 -56885059 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1076 524 280 123 26 chr12 64372471 64372853 -56884677 - L1M2 LINE L1 -1441 4702 4284 5 1076 514 369 45 53 chr12 64373042 64373422 -56884108 - Lx8 LINE L1 -200 7273 6897 5 1076 356 346 52 24 chr12 64373413 64373703 -56883827 - L1M2 LINE L1 -1849 4294 3997 5 1076 21 89 0 0 chr12 64373961 64374017 -56883513 + AT_rich Low_complexity Low_complexity 1 56 0 5 1076 189 0 0 0 chr12 64375865 64375886 -56881644 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1076 290 359 49 29 chr12 64375887 64376091 -56881439 - Lx9 LINE L1 -207 7437 7230 5 1076 1083 89 7 0 chr12 64376109 64376255 -56881275 - B1_Mus1 SINE Alu -1 147 1 5 1076 208 220 55 9 chr12 64376802 64376912 -56880618 + (TA)n Simple_repeat Simple_repeat 2 116 0 5 1076 433 104 26 0 chr12 64377844 64377921 -56879609 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1076 34 93 0 0 chr12 64378789 64378886 -56878644 + AT_rich Low_complexity Low_complexity 1 97 0 5 1076 21 0 0 0 chr12 64378966 64378987 -56878543 + AT_rich Low_complexity Low_complexity 1 21 0 5 1076 951 82 0 0 chr12 64380067 64380201 -56877329 + (GAAA)n Simple_repeat Simple_repeat 2 135 0 5 1076 301 216 92 10 chr12 64380202 64380300 -56877230 + L1M4 LINE L1 90 195 -6347 5 1076 425 353 15 5 chr12 64380518 64380720 -56876810 + L1M4 LINE L1 445 648 -5894 5 1076 294 254 89 40 chr12 64380966 64381127 -56876403 + Lx7 LINE L1 4402 4587 -1296 5 1076 401 234 30 75 chr12 64381127 64381261 -56876269 + RMER20B LTR ERVK 1 128 -499 5 1076 1559 111 56 22 chr12 64381298 64381566 -56875964 - L1Md_F2 LINE L1 0 6582 6306 5 1076 792 309 45 43 chr12 64382273 64382917 -56874613 + Lx7 LINE L1 5570 6176 -1520 5 1076 977 195 52 88 chr12 64383065 64383486 -56874044 + RMER17C LTR ERVK 1 406 -4 5 1076 23 54 0 0 chr12 64383726 64383763 -56873767 + AT_rich Low_complexity Low_complexity 1 37 0 5 1076 211 217 11 46 chr12 64385173 64385260 -56872270 + A-rich Low_complexity Low_complexity 5 88 0 5 1076 299 252 56 56 chr12 64385283 64385409 -56872121 - Lx7 LINE L1 -366 7330 7205 5 1076 444 67 0 0 chr12 64385466 64385526 -56872004 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 5 1076 1434 212 162 26 chr12 64385530 64386073 -56871457 - Lx6 LINE L1 -169 7291 6695 5 1076 252 0 0 0 chr12 64386077 64386105 -56871425 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1076 228 35 0 0 chr12 64386253 64386282 -56871248 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1076 392 272 18 0 chr12 64386426 64386540 -56870990 - RMER17B LTR ERVK -1 957 842 5 1076 263 95 24 0 chr12 64386537 64386579 -56870951 - RMER17B LTR ERVK -915 43 1 5 1076 342 0 0 0 chr12 64386607 64386645 -56870885 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1076 242 138 17 0 chr12 64386647 64386705 -56870825 + GA-rich Low_complexity Low_complexity 2 60 0 5 1076 581 157 30 0 chr12 64386756 64386890 -56870640 + (TA)n Simple_repeat Simple_repeat 2 139 0 5 1076 4589 46 29 2 chr12 64387270 64387856 -56869674 - L1Md_F3 LINE L1 0 6584 5983 5 1076 720 337 115 19 chr12 64388118 64388493 -56869037 - Lx8 LINE L1 -129 7344 6934 5 1076 2372 39 0 0 chr12 64388812 64389092 -56868438 + L1Md_F2 LINE L1 6157 6436 -146 5 1076 224 234 26 13 chr12 64389586 64389664 -56867866 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 5 1076 24 32 0 0 chr12 64390062 64390093 -56867437 + AT_rich Low_complexity Low_complexity 1 31 0 5 1076 21 0 0 0 chr12 64390270 64390291 -56867239 + AT_rich Low_complexity Low_complexity 1 21 0 5 1076 3305 45 56 65 chr12 64390534 64391013 -56866517 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1076 358 123 82 0 chr12 64391015 64391088 -56866442 + IAPEz-int LTR ERVK 3 81 -1906 5 1076 1108 138 41 66 chr12 64391085 64391352 -56866178 + IAPEz-int LTR ERVK 10 250 -7331 5 1076 249 289 0 0 chr12 64391352 64391404 -56866126 + RLTR27 LTR ERVK 221 272 -37 5 1076 3906 54 2 18 chr12 64391404 64391910 -56865620 + IAPEz-int LTR ERVK 165 662 -5819 5 1076 2272 58 0 0 chr12 64391910 64392188 -56865342 + IAPEz-int LTR ERVK 1359 1636 -4845 5 1076 5742 60 12 9 chr12 64392187 64392929 -56864601 + IAPEz-int LTR ERVK 5736 6479 -2 5 1076 3445 40 43 64 chr12 64392931 64393416 -56864114 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1076 4299 209 60 5 chr12 64394267 64395322 -56862208 + Lx7 LINE L1 4511 5623 -257 5 1076 6244 45 0 0 chr12 64395332 64396088 -56861442 - L1Md_T LINE L1 -1 6581 5826 5 1076 17544 25 1 0 chr12 64396088 64398154 -56859376 + L1Md_T LINE L1 3630 5697 -186 5 1076 812 211 30 30 chr12 64398143 64398343 -56859187 + Lx7 LINE L1 5615 5814 -1882 5 1076 3102 87 4 71 chr12 64398452 64398961 -56858569 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1076 371 127 0 0 chr12 64398963 64399018 -56858512 + IAPEz-int LTR ERVK 3 57 -1930 5 1076 3297 77 7 31 chr12 64399016 64399755 -56857775 + IAPEz-int LTR ERVK 18 662 -5819 5 1076 939 59 0 0 chr12 64399755 64399874 -56857656 + IAPEz-int LTR ERVK 1359 1477 -5004 5 1076 1927 76 12 0 chr12 64399869 64400120 -56857410 + IAPEz-int LTR ERVK 2244 2497 -5183 5 1076 15093 40 3 3 chr12 64400138 64401942 -56855588 + IAPEz-int LTR ERVK 4678 6481 0 5 1076 3127 85 4 71 chr12 64401942 64402451 -56855079 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1076 228 159 0 22 chr12 64402653 64402698 -56854832 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1076 2038 132 6 22 chr12 64402845 64403169 -56854361 + ORR1A2 LTR MaLR 1 319 -8 5 1076 337 337 21 11 chr12 64403323 64403509 -56854021 - L1M5 LINE L1 -3478 2668 2481 5 1076 206 98 0 47 chr12 64404970 64405013 -56852517 + (CAAAAA)n Simple_repeat Simple_repeat 4 44 0 5 1076 24 32 0 0 chr12 64405043 64405074 -56852456 + AT_rich Low_complexity Low_complexity 1 31 0 5 1076 194 62 31 0 chr12 64405160 64405192 -56852338 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1076 1047 116 0 0 chr12 64405645 64405791 -56851739 - B1_Mus1 SINE Alu -1 147 2 5 1076 271 0 51 0 chr12 64405791 64405830 -56851700 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 5 1076 334 263 10 31 chr12 64406302 64406400 -56851130 - Lx8 LINE L1 -349 7124 7029 5 1076 459 0 0 0 chr12 64406459 64406510 -56851020 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1076 4865 86 6 3 chr12 64406615 64407283 -56850247 - L1_Mus1 LINE L1 0 6567 5898 5 1076 1064 321 39 7 chr12 64407311 64407775 -56849755 - Lx8 LINE L1 -623 6850 6372 5 1076 246 232 0 0 chr12 64407778 64407834 -56849696 + L1M2 LINE L1 5564 5619 -678 5 1076 22 0 0 0 chr12 64407927 64407949 -56849581 + AT_rich Low_complexity Low_complexity 1 22 0 5 1076 566 264 59 66 chr12 64408802 64409058 -56848472 - RMER1C Other Other -18 1324 1071 5 1076 28 0 0 0 chr12 64409133 64409161 -56848369 + AT_rich Low_complexity Low_complexity 1 28 0 5 1076 29 0 0 0 chr12 64410197 64410226 -56847304 + AT_rich Low_complexity Low_complexity 1 29 0 5 1076 851 329 45 59 chr12 64410788 64411146 -56846384 - ORR1E LTR MaLR -6 353 1 5 1076 1184 253 19 191 chr12 64411320 64411720 -56845810 + RMER19C LTR ERVK 1 304 -307 5 1076 189 0 0 0 chr12 64411720 64411741 -56845789 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1076 1184 253 19 191 chr12 64411741 64412078 -56845452 + RMER19C LTR ERVK 305 610 -1 5 1076 23 68 0 0 chr12 64412122 64412166 -56845364 + AT_rich Low_complexity Low_complexity 1 44 0 6 1076 390 21 0 0 chr12 64412241 64412288 -56845242 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 6 1076 1799 73 26 23 chr12 64412341 64412606 -56844924 + L1Md_F2 LINE L1 6304 6569 -13 6 1076 1643 238 111 11 chr12 64412667 64413135 -56844395 + RMER15 LTR ERVL 61 575 0 6 1076 383 258 146 24 chr12 64414049 64414172 -56843358 - B1_Mur1 SINE Alu 0 149 12 6 1076 315 262 52 52 chr12 64414330 64414503 -56843027 - Lx4B LINE L1 -3 7055 6883 6 1076 556 166 11 11 chr12 64414539 64414716 -56842814 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 6 1076 21 82 0 0 chr12 64414777 64414826 -56842704 + AT_rich Low_complexity Low_complexity 1 49 0 6 1076 2420 225 38 50 chr12 64414826 64415410 -56842120 - Lx5 LINE L1 -3 7047 6471 6 1076 2572 226 30 0 chr12 64415401 64415927 -56841603 - Lx5 LINE L1 -230 6820 6279 6 1076 2971 226 81 50 chr12 64415930 64417274 -56840256 + Lx LINE L1 5278 6647 -7 6 1076 210 176 40 13 chr12 64417945 64418020 -56839510 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 1076 397 152 0 0 chr12 64418647 64418706 -56838824 + B1_Mus1 SINE Alu 2 60 -88 6 1076 413 122 0 13 chr12 64418707 64418782 -56838748 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 6 1076 1074 301 94 24 chr12 64418930 64419441 -56838089 + RCHARR1 DNA MER1_type 49 595 -379 6 1076 321 235 20 20 chr12 64419507 64419607 -56837923 - Lx7 LINE L1 -18 7678 7579 6 1076 684 296 32 28 chr12 64419603 64419850 -56837680 - Lx7 LINE L1 -356 7340 7093 6 1076 387 350 10 49 chr12 64419862 64420066 -56837464 - BGLII_B LTR ERVK -31 410 215 6 1076 299 232 110 0 chr12 64421075 64421196 -56836334 - L1M2 LINE L1 -881 5259 5120 6 1076 29 0 0 0 chr12 64421220 64421249 -56836281 + AT_rich Low_complexity Low_complexity 1 29 0 6 1076 252 59 0 0 chr12 64421548 64421582 -56835948 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1076 9394 12 0 2 chr12 64421620 64423399 -56834131 - L1Md_T LINE L1 0 6582 4807 6 1076 29 0 0 0 chr12 64423399 64423428 -56834102 + AT_rich Low_complexity Low_complexity 1 29 0 6 1076 299 259 143 27 chr12 64423571 64423868 -56833662 - L1M2 LINE L1 -881 5259 4926 6 1076 396 0 0 0 chr12 64423915 64423959 -56833571 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1076 22 56 0 0 chr12 64423966 64424002 -56833528 + AT_rich Low_complexity Low_complexity 1 36 0 6 1076 2537 69 18 0 chr12 64424111 64424445 -56833085 - L1_Mus1 LINE L1 -4 6563 6224 6 1076 3134 64 3 0 chr12 64424445 64424835 -56832695 + L1_Mus1 LINE L1 5828 6218 -349 6 1076 584 365 51 12 chr12 64426275 64426530 -56831000 + B4A SINE B4 20 284 -8 6 1076 3905 175 44 132 chr12 64426712 64427371 -56830159 - L1_Mus4 LINE L1 -133 5750 5070 6 1076 866 55 0 0 chr12 64427371 64427481 -56830049 - B1_Mm SINE Alu 0 147 38 6 1076 304 197 0 16 chr12 64427429 64427491 -56830039 - 4.5SRNA scRNA scRNA -8 86 26 6 1076 3905 175 44 132 chr12 64427491 64427718 -56829812 - L1_Mus4 LINE L1 -133 5069 4834 6 1076 5888 120 3 7 chr12 64427716 64428612 -56828918 + L1_Mus4 LINE L1 5732 6624 -12 6 1076 213 292 0 22 chr12 64428691 64428782 -56828748 + (TATG)n Simple_repeat Simple_repeat 4 92 0 6 1076 4302 78 2 8 chr12 64429009 64429595 -56827935 + L1Md_F2 LINE L1 6001 6582 0 6 1076 738 152 0 0 chr12 64429633 64429810 -56827720 + CT-rich Low_complexity Low_complexity 2 178 0 6 1076 888 279 32 78 chr12 64429845 64430201 -56827329 - MT2B LTR ERVL -61 540 140 6 1076 630 226 0 27 chr12 64430201 64430351 -56827179 + B1_Mus1 SINE Alu 2 147 -1 6 1076 514 333 48 123 chr12 64430351 64430491 -56827039 - MT2B LTR ERVL -394 139 1 6 1076 295 196 0 0 chr12 64430689 64430740 -56826790 - L1_Rod LINE L1 -103 5744 5694 6 1076 339 203 0 0 chr12 64431211 64431285 -56826245 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 6 1076 276 30 0 0 chr12 64431285 64431318 -56826212 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1076 1501 232 160 18 chr12 64431320 64431763 -56825767 - MT2B LTR ERVL -95 506 1 6 1076 22 0 0 0 chr12 64431802 64431824 -56825706 + AT_rich Low_complexity Low_complexity 1 22 0 6 1076 651 169 53 8 chr12 64432005 64432136 -56825394 + Lx2 LINE L1 6859 6995 -2 6 1076 22 80 0 0 chr12 64432145 64432195 -56825335 + AT_rich Low_complexity Low_complexity 1 50 0 6 1076 24 85 0 0 chr12 64432608 64432667 -56824863 + AT_rich Low_complexity Low_complexity 1 59 0 6 1076 22 0 0 0 chr12 64433456 64433478 -56824052 + AT_rich Low_complexity Low_complexity 1 22 0 6 1076 441 0 0 0 chr12 64433673 64433722 -56823808 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1076 559 279 82 41 chr12 64434140 64434155 -56823375 + B3 SINE B2 13 23 -193 6 1076 830 155 224 11 chr12 64434155 64434338 -56823192 + URR1A DNA MER1_type 5 226 0 6 1076 559 279 82 41 chr12 64434338 64434516 -56823014 + B3 SINE B2 24 214 -2 6 1076 413 282 103 46 chr12 64434690 64435039 -56822491 - L1MA6 LINE L1 -66 6234 5866 6 1076 1109 69 0 0 chr12 64435254 64435398 -56822132 + B1_Mus1 SINE Alu 2 145 -3 6 1076 315 0 0 0 chr12 64435398 64435433 -56822097 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1076 28 29 0 0 chr12 64435447 64435482 -56822048 + AT_rich Low_complexity Low_complexity 1 35 0 6 1076 1292 73 0 11 chr12 64435673 64435854 -56821676 - L1Md_F2 LINE L1 -10 6572 6394 6 1076 450 0 0 0 chr12 64436517 64436567 -56820963 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1076 369 123 0 0 chr12 64436581 64436646 -56820884 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1076 262 213 120 42 chr12 64436759 64436815 -56820715 - L1M4 LINE L1 -872 5274 5214 6 1076 3497 161 52 18 chr12 64436815 64437484 -56820046 - RLTR17 LTR ERVK 0 692 1 6 1076 262 213 120 42 chr12 64437484 64437569 -56819961 - L1M4 LINE L1 -933 5213 5122 6 1076 396 0 0 0 chr12 64437797 64437841 -56819689 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1076 27 49 0 0 chr12 64438086 64438127 -56819403 + AT_rich Low_complexity Low_complexity 1 41 0 6 1076 189 169 30 119 chr12 64438844 64438911 -56818619 - L3 LINE CR1 -3726 763 703 6 1076 24 77 0 0 chr12 64439044 64439096 -56818434 + AT_rich Low_complexity Low_complexity 1 52 0 6 1076 1182 188 9 0 chr12 64439995 64440218 -56817312 - URR1A DNA MER1_type 0 226 2 6 1076 258 321 45 6 chr12 64440623 64440780 -56816750 - MERVL-int LTR ERVL -2854 2631 2469 6 1076 1073 109 0 0 chr12 64443589 64443736 -56813794 - B1_Mus1 SINE Alu 0 148 2 6 1076 209 273 36 9 chr12 64444626 64444737 -56812793 + (TA)n Simple_repeat Simple_repeat 2 115 0 6 1076 2541 156 20 43 chr12 64445205 64445276 -56812254 + L1_Mur2 LINE L1 2959 3037 -2840 6 1076 2270 65 9 21 chr12 64445276 64445604 -56811926 - L1_Mus2 LINE L1 0 6566 6243 6 1076 2541 156 20 43 chr12 64445604 64446089 -56811441 + L1_Mur2 LINE L1 3038 3502 -2375 6 1076 269 342 49 41 chr12 64448072 64448194 -56809336 + MLT1F LTR MaLR 31 153 -395 6 1076 1205 279 235 27 chr12 64449404 64450026 -56807504 - Lx6 LINE L1 -26 7434 6684 6 1076 227 31 31 0 chr12 64450084 64450116 -56807414 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1076 2367 226 70 68 chr12 64450188 64451297 -56806233 + Lx6 LINE L1 5207 6375 -683 6 1076 230 324 44 79 chr12 64451341 64451455 -56806075 - B3A SINE B2 -3 195 86 6 1076 1836 116 0 57 chr12 64451458 64451759 -56805771 + Lx3A LINE L1 6692 6975 -6 6 1076 400 349 8 8 chr12 64452024 64452154 -56805376 + B1F SINE Alu 13 142 -7 6 1076 38506 10 0 2 chr12 64452173 64458571 -56798959 + L1Md_A LINE L1 1 5586 -297 6 1076 8974 2 1 0 chr12 64458571 64459565 -56797965 + L1Md_A LINE L1 5587 6581 -1 6 1076 52 41 0 0 chr12 64460146 64460219 -56797311 + AT_rich Low_complexity Low_complexity 1 73 0 6 1076 21 36 0 0 chr12 64460320 64460348 -56797182 + AT_rich Low_complexity Low_complexity 1 28 0 6 1076 231 344 0 0 chr12 64460389 64460479 -56797051 - L1MC3 LINE L1 -279 7506 7417 6 1076 286 228 116 32 chr12 64460669 64460764 -56796766 - B2_Mm2 SINE B2 -92 103 1 6 1076 219 300 11 22 chr12 64460885 64460977 -56796553 + CT-rich Low_complexity Low_complexity 5 95 0 6 1076 295 301 48 0 chr12 64461580 64461683 -56795847 - L1MC3 LINE L1 -1521 6264 6157 6 1076 426 20 0 0 chr12 64461685 64461736 -56795794 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1076 587 181 67 8 chr12 64462001 64462135 -56795395 - RMER1C Other Other -1 1341 1200 6 1076 441 178 0 25 chr12 64462136 64462257 -56795273 + GA-rich Low_complexity Low_complexity 2 119 0 6 1076 2142 238 6 14 chr12 64462257 64462744 -56794786 - RMER1C Other Other -124 1218 736 6 1076 198 0 0 0 chr12 64464687 64464709 -56792821 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6 1076 237 122 59 30 chr12 64464724 64464825 -56792705 + T-rich Low_complexity Low_complexity 3 106 0 6 1076 212 324 44 93 chr12 64464944 64465148 -56792382 - B2_Mm2 SINE B2 0 195 2 6 1076 2483 173 140 11 chr12 64465829 64466437 -56791093 - RMER6C LTR ERVK 0 690 5 6 1076 215 175 18 0 chr12 64466714 64466771 -56790759 + GA-rich Low_complexity Low_complexity 3 60 0 6 1076 909 200 0 35 chr12 64468095 64468297 -56789233 + Lx2B LINE L1 6806 7000 0 6 1076 215 152 0 61 chr12 64468518 64468567 -56788963 + A-rich Low_complexity Low_complexity 2 47 0 6 1076 968 178 21 5 chr12 64468780 64468972 -56788558 - Lx4B LINE L1 -287 6771 6577 6 1076 291 386 105 35 chr12 64468983 64469155 -56788375 + B4A SINE B4 83 266 -26 6 1076 397 282 107 40 chr12 64470835 64471012 -56786518 + MER5A DNA MER1_type 1 189 0 6 1076 1079 77 7 0 chr12 64472079 64472222 -56785308 + B1_Mus2 SINE Alu 3 146 -1 6 1076 1430 196 151 19 chr12 64472749 64473333 -56784197 - RMER19A LTR ERVK -8 729 1 6 1076 1493 117 27 19 chr12 64473820 64474082 -56783448 - L1_Mus3 LINE L1 -5 6633 6370 6 1076 540 141 0 0 chr12 64474373 64474494 -56783036 + (TC)n Simple_repeat Simple_repeat 1 121 0 6 1076 29575 101 27 1 chr12 64475333 64480373 -56777157 + L1Md_F2 LINE L1 415 5583 -300 6 1076 7318 75 4 8 chr12 64480376 64481375 -56776155 + L1Md_F2 LINE L1 5587 6581 -1 6 1076 781 145 26 11 chr12 64481769 64481925 -56775605 + B2_Mm2 SINE B2 5 176 -22 6 1076 252 0 0 0 chr12 64481926 64481954 -56775576 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 6 1076 249 354 0 0 chr12 64482185 64482267 -56775263 + ID4 SINE ID 2 83 0 7 1076 343 282 70 9 chr12 64483478 64483585 -56773945 - B1F1 SINE Alu -5 112 3 7 1076 22 88 0 0 chr12 64484020 64484077 -56773453 + AT_rich Low_complexity Low_complexity 1 57 0 7 1076 28 48 0 0 chr12 64484104 64484146 -56773384 + AT_rich Low_complexity Low_complexity 1 42 0 7 1076 1173 68 0 0 chr12 64484205 64484352 -56773178 + B1_Mm SINE Alu 1 147 0 7 1076 27 0 0 0 chr12 64484551 64484578 -56772952 + AT_rich Low_complexity Low_complexity 1 27 0 7 1076 208 259 0 0 chr12 64485091 64485145 -56772385 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1076 339 157 0 0 chr12 64485299 64485388 -56772142 + (CAGA)n Simple_repeat Simple_repeat 2 90 0 7 1076 294 394 40 69 chr12 64485419 64485621 -56771909 + MTEa LTR MaLR 51 246 -133 7 1076 4969 137 36 68 chr12 64485969 64487096 -56770434 + L1_Mm LINE L1 3916 5006 -877 7 1077 236 62 91 30 chr12 64487869 64487935 -56769595 + T-rich Low_complexity Low_complexity 3 72 0 7 1077 1545 339 47 11 chr12 64487968 64488632 -56768898 - RMER15-int LTR ERVL -3156 1843 1156 7 1077 261 75 0 0 chr12 64488676 64488716 -56768814 + (TTAG)n Simple_repeat Simple_repeat 1 40 0 7 1077 243 0 0 0 chr12 64488717 64488744 -56768786 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1077 1048 116 0 0 chr12 64488744 64488890 -56768640 - B1_Mus1 SINE Alu 0 148 3 7 1077 21 0 0 0 chr12 64489034 64489055 -56768475 + AT_rich Low_complexity Low_complexity 1 21 0 7 1077 30 59 0 0 chr12 64489369 64489420 -56768110 + AT_rich Low_complexity Low_complexity 1 51 0 7 1077 30 69 0 0 chr12 64489512 64489570 -56767960 + AT_rich Low_complexity Low_complexity 1 58 0 7 1077 1351 66 0 0 chr12 64489571 64489753 -56767777 - L1_Mus1 LINE L1 -1 6566 6385 7 1077 28 29 0 0 chr12 64490378 64490413 -56767117 + AT_rich Low_complexity Low_complexity 1 35 0 7 1077 495 264 113 77 chr12 64490823 64490991 -56766539 + B3 SINE B2 36 209 -7 7 1077 22 0 0 0 chr12 64491113 64491135 -56766395 + AT_rich Low_complexity Low_complexity 1 22 0 7 1077 695 95 0 9 chr12 64491880 64491986 -56765544 + (TTTC)n Simple_repeat Simple_repeat 4 108 0 7 1077 1430 159 77 7 chr12 64491994 64492266 -56765264 - Lx3A LINE L1 -5 6976 6686 7 1077 3299 122 62 11 chr12 64492266 64492796 -56764734 + Lx3A LINE L1 6133 6689 -292 7 1077 1499 59 0 16 chr12 64493900 64494090 -56763440 - B2_Mm1t SINE B2 -6 187 1 7 1077 23 0 0 0 chr12 64494096 64494119 -56763411 + AT_rich Low_complexity Low_complexity 1 23 0 7 1077 1416 236 26 59 chr12 64494371 64494794 -56762736 + L1VL4 LINE L1 194 602 -5700 7 1077 31534 37 1 0 chr12 64494785 64500000 -56757530 + L1Md_Gf LINE L1 1 5159 -727 7 1077 3715 19 0 0 chr12 64500000 64500430 -56757100 + L1Md_T LINE L1 5157 5586 -297 1 1077 8882 8 0 4 chr12 64500430 64501430 -56756100 + L1Md_T LINE L1 5587 6582 0 1 1077 12884 104 25 5 chr12 64501440 64502181 -56755349 + L1VL4 LINE L1 585 1332 -2227 2 1077 567 0 0 0 chr12 64502181 64502244 -56755286 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1077 12884 105 36 8 chr12 64502244 64503869 -56753661 + L1VL4 LINE L1 1333 3013 -546 2 1077 5831 138 34 13 chr12 64503870 64504843 -56752687 + Lx LINE L1 5662 6654 0 4 1077 383 98 16 0 chr12 64504844 64504905 -56752625 + (GGGGA)n Simple_repeat Simple_repeat 5 66 0 5 1077 371 21 21 0 chr12 64506076 64506124 -56751406 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1077 429 36 0 0 chr12 64506252 64506307 -56751223 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1077 551 307 33 52 chr12 64506413 64506626 -56750904 + B3 SINE B2 1 209 -7 8 1077 410 299 24 38 chr12 64507814 64507901 -56749629 + L1MA7 LINE L1 4999 5083 -1060 9 1077 180 0 0 0 chr12 64507901 64507921 -56749609 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1077 410 299 24 38 chr12 64507921 64508045 -56749485 + L1MA7 LINE L1 5084 5206 -937 9 1077 427 286 116 38 chr12 64508072 64508432 -56749098 + L1MA7 LINE L1 5591 5976 -327 9 1077 1130 203 14 5 chr12 64509134 64509357 -56748173 - URR1B DNA MER1_type 0 225 1 1 1077 33356 72 2 7 chr12 64509727 64514974 -56742556 + L1Md_T LINE L1 366 5586 -297 1 1077 8296 33 8 0 chr12 64514975 64515962 -56741568 + L1Md_T LINE L1 5588 6582 0 1 1077 2579 77 3 0 chr12 64515962 64516301 -56741229 + L1Md_F2 LINE L1 5245 5584 -299 1 1077 7683 55 16 0 chr12 64516303 64517280 -56740250 + L1Md_F2 LINE L1 5587 6579 -3 1 1077 426 231 108 0 chr12 64517546 64517676 -56739854 + Lx9 LINE L1 6886 7029 -615 1 1077 25 75 0 0 chr12 64518355 64518408 -56739122 + AT_rich Low_complexity Low_complexity 1 53 0 1 1077 23 0 0 0 chr12 64519293 64519316 -56738214 + AT_rich Low_complexity Low_complexity 1 23 0 1 1077 1724 207 31 144 chr12 64520090 64520637 -56736893 + RMER19B LTR ERVK 1 485 -417 1 1077 554 240 101 14 chr12 64520638 64520786 -56736744 - RMER19B LTR ERVK -15 887 727 1 1077 1283 171 27 23 chr12 64520794 64521052 -56736478 + Lx3A LINE L1 6713 6971 -10 1 1077 30 0 0 0 chr12 64521063 64521093 -56736437 + AT_rich Low_complexity Low_complexity 1 30 0 2 1077 1024 85 14 0 chr12 64521192 64521333 -56736197 + B1_Mus2 SINE Alu 5 147 0 2 1077 231 61 0 0 chr12 64521342 64521375 -56736155 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2 1077 1097 293 79 43 chr12 64521998 64522328 -56735202 + MTD LTR MaLR 13 356 -63 2 1077 1236 28 0 0 chr12 64522328 64522471 -56735059 + B1_Mus1 SINE Alu 1 143 -5 2 1077 270 0 0 0 chr12 64522475 64522505 -56735025 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1077 1097 293 79 43 chr12 64522505 64522562 -56734968 + MTD LTR MaLR 357 419 0 2 1077 8882 136 16 10 chr12 64522578 64524235 -56733295 - Lx2 LINE L1 -1 6996 5112 2 1077 273 125 0 0 chr12 64525797 64525853 -56731677 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1077 288 0 0 0 chr12 64525854 64525886 -56731644 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1077 305 301 20 51 chr12 64525923 64526021 -56731509 - B3A SINE B2 -103 95 1 2 1077 429 193 94 68 chr12 64526244 64526361 -56731169 - PB1D9 SINE Alu 0 120 1 3 1077 319 353 193 39 chr12 64526450 64526839 -56730691 + L1MCb LINE L1 1 449 -5596 3 1077 2713 226 44 9 chr12 64526869 64527361 -56730169 + RMER1B Other Other 223 905 -161 3 1077 282 56 0 0 chr12 64527361 64527397 -56730133 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 3 1077 2713 215 40 9 chr12 64527397 64527531 -56729999 + RMER1B Other Other 906 1057 -9 3 1077 3756 282 35 24 chr12 64527534 64528624 -56728906 - Lx6 LINE L1 -192 7268 6167 3 1077 31881 82 19 4 chr12 64528633 64529942 -56727588 - L1Md_F2 LINE L1 -12 6570 5248 3 1077 201 108 0 0 chr12 64529942 64529979 -56727551 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1077 31881 87 25 9 chr12 64529979 64531632 -56725898 - L1Md_F2 LINE L1 -636 5247 3578 3 1077 1675 129 7 28 chr12 64531632 64531918 -56725612 - L1Md_F2 LINE L1 -13 6569 6290 3 1077 31881 91 40 8 chr12 64531918 64534770 -56722760 - L1Md_F2 LINE L1 -2306 3577 611 3 1077 3703 236 52 23 chr12 64534765 64536032 -56721498 - Lx6 LINE L1 -1270 6190 4887 3 1077 3666 182 18 3 chr12 64536035 64536230 -56721300 + Lx4A LINE L1 5752 5947 -1111 3 1077 3293 43 5 0 chr12 64536230 64536624 -56720906 + MTA_Mm LTR MaLR 1 396 0 3 1077 3666 182 18 3 chr12 64536624 64537115 -56720415 + Lx4A LINE L1 5948 6447 -611 3 1077 1562 222 34 11 chr12 64537116 64537184 -56720346 + RLTR20B2 LTR ERVK 2 69 -491 4 1077 1672 101 4 0 chr12 64537184 64537421 -56720109 + L1_Mus1 LINE L1 6320 6557 -10 4 1077 405 0 0 0 chr12 64537421 64537466 -56720064 + (TAA)n Simple_repeat Simple_repeat 1 45 0 4 1077 1562 222 34 11 chr12 64537466 64537624 -56719906 + RLTR20B2 LTR ERVK 70 225 -335 4 1077 300 83 0 0 chr12 64537624 64537672 -56719858 + (CAA)n Simple_repeat Simple_repeat 2 49 0 4 1077 1562 219 444 18 chr12 64537672 64537911 -56719619 + RLTR20B2 LTR ERVK 226 573 -4 4 1077 2879 199 34 7 chr12 64537914 64538506 -56719024 + Lx4A LINE L1 6442 7049 -9 3 1077 8045 197 20 42 chr12 64538513 64540444 -56717086 + L1_Mur2 LINE L1 1608 3495 -2385 4 1077 2836 128 38 17 chr12 64540444 64540920 -56716610 + Lx2 LINE L1 6512 6997 0 4 1077 8045 197 20 42 chr12 64540920 64541048 -56716482 + L1_Mur2 LINE L1 3496 3621 -2259 4 1077 6825 133 21 6 chr12 64541049 64542289 -56715241 - Lx LINE L1 -4 6650 5390 4 1077 9004 166 19 25 chr12 64542287 64544069 -56713461 + L1_Mur2 LINE L1 3623 5393 -484 4 1077 1228 213 80 12 chr12 64544067 64544404 -56713126 + L1_Mur3 LINE L1 3611 3970 -1910 4 1077 2022 264 138 22 chr12 64544431 64545213 -56712317 + Lx6 LINE L1 6261 7133 -327 4 1077 731 227 231 0 chr12 64545234 64545507 -56712023 + Lx9 LINE L1 7307 7642 -2 4 1077 281 239 99 58 chr12 64545681 64545872 -56711658 + L1M3 LINE L1 3810 4008 -2132 5 1077 192 77 0 0 chr12 64545966 64545992 -56711538 + (TTA)n Simple_repeat Simple_repeat 3 28 0 5 1077 1611 306 86 32 chr12 64546214 64547220 -56710310 + L1MC3 LINE L1 5782 6841 -944 5 1077 198 191 0 0 chr12 64547273 64547315 -56710215 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1077 351 0 0 0 chr12 64547393 64547432 -56710098 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 5 1077 456 135 0 0 chr12 64547433 64547507 -56710023 + (CATA)n Simple_repeat Simple_repeat 3 76 0 5 1077 21 36 0 0 chr12 64547519 64547547 -56709983 + AT_rich Low_complexity Low_complexity 1 28 0 5 1077 541 316 53 42 chr12 64547634 64548011 -56709519 + L1MC3 LINE L1 7135 7515 -270 5 1077 570 249 38 52 chr12 64548805 64549017 -56708513 - B3 SINE B2 -5 211 3 5 1077 3159 27 0 3 chr12 64549148 64549514 -56708016 + RLTR10B2 LTR ERVK 1 365 0 5 1077 194 320 106 7 chr12 64549968 64550119 -56707411 + L2a LINE L2 3223 3388 -38 5 1077 333 184 44 44 chr12 64551220 64551379 -56706151 - Lx9 LINE L1 -7 7637 7479 6 1077 474 49 0 0 chr12 64551487 64551548 -56705982 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1077 1090 216 20 64 chr12 64551548 64551845 -56705685 - Lx9 LINE L1 -166 7478 7195 6 1077 439 304 96 42 chr12 64553616 64553877 -56703653 - Tigger7 DNA MER2_type -2 2489 2215 6 1077 447 78 0 0 chr12 64554282 64554346 -56703184 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1077 290 198 87 68 chr12 64554346 64554449 -56703081 - Lx9 LINE L1 -8 7636 7532 6 1077 366 61 0 0 chr12 64554449 64554498 -56703032 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1077 721 227 0 13 chr12 64554509 64554665 -56702865 - Lx9 LINE L1 -201 7443 7290 6 1077 11447 139 16 26 chr12 64554802 64557372 -56700158 + L1Md_F LINE L1 504 3030 -2853 6 1077 1625 125 153 24 chr12 64557400 64557694 -56699836 + Lx2 LINE L1 6654 6985 -12 6 1077 525 216 0 0 chr12 64557696 64557807 -56699723 - ORR1B1 LTR MaLR -283 111 1 6 1077 530 346 71 24 chr12 64558438 64558648 -56698882 - B4 SINE B4 0 292 73 6 1077 2112 204 7 2 chr12 64558652 64559070 -56698460 + L1_Mm LINE L1 4808 5227 -656 7 1077 4189 118 12 1 chr12 64559070 64559721 -56697809 + L1_Mus4 LINE L1 5976 6633 -3 7 1077 517 336 49 49 chr12 64559927 64560271 -56697259 - ORR1E LTR MaLR -5 354 11 7 1077 9000 9 0 0 chr12 64560489 64561942 -56695588 - L1Md_T LINE L1 0 6582 5130 7 1077 2796 16 0 0 chr12 64561941 64562259 -56695271 + L1Md_T LINE L1 4814 5131 -752 7 1077 32005 89 4 8 chr12 64562791 64567968 -56689562 + L1Md_F2 LINE L1 446 5585 -298 7 1077 7532 72 3 1 chr12 64567969 64568951 -56688579 + L1Md_F2 LINE L1 5587 6570 -12 7 1077 1502 171 4 0 chr12 64569373 64569619 -56687911 + RMER6C LTR ERVK 1 247 -473 7 1077 3647 219 131 45 chr12 64569619 64570635 -56686895 - RLTR25A LTR ERVK 0 1103 1 7 1077 1892 207 67 14 chr12 64570635 64570757 -56686773 + RMER6C LTR ERVK 238 364 -326 7 1077 666 0 0 0 chr12 64570757 64570831 -56686699 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 1077 1892 207 67 14 chr12 64570831 64571138 -56686392 + RMER6C LTR ERVK 365 690 0 7 1077 325 402 49 77 chr12 64571176 64571359 -56686171 + B4A SINE B4 1 178 -114 7 1077 189 107 0 0 chr12 64571578 64571606 -56685924 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1077 251 231 35 29 chr12 64571662 64571836 -56685694 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 8 1077 233 262 22 77 chr12 64572562 64572653 -56684877 + B4A SINE B4 1 86 -206 8 1077 279 174 0 0 chr12 64572653 64572739 -56684791 + A-rich Low_complexity Low_complexity 1 86 0 8 1077 329 353 7 57 chr12 64572739 64572880 -56684650 + B4A SINE B4 82 215 -77 8 1077 2390 121 3 0 chr12 64572880 64573220 -56684310 + Lx2 LINE L1 6305 6645 -352 8 1077 1152 114 91 29 chr12 64573218 64573426 -56684104 + Lx2 LINE L1 6775 6995 -2 8 1077 455 364 35 71 chr12 64573781 64573979 -56683551 - B3 SINE B2 -24 192 2 8 1077 315 350 25 8 chr12 64573979 64574100 -56683430 - B1F SINE Alu -1 148 26 8 1077 24 67 0 0 chr12 64574166 64574211 -56683319 + AT_rich Low_complexity Low_complexity 1 45 0 8 1077 1691 24 5 5 chr12 64574481 64574691 -56682839 + L1Md_F2 LINE L1 6364 6573 -9 8 1077 368 284 41 17 chr12 64575106 64575240 -56682290 - B3 SINE B2 -1 215 80 8 1077 225 94 0 0 chr12 64576019 64576051 -56681479 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1077 2441 166 92 7 chr12 64576146 64576310 -56681220 - RLTR19 LTR ERVK -2 497 314 9 1077 477 0 0 0 chr12 64576310 64576363 -56681167 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1077 2441 166 92 7 chr12 64576363 64576654 -56680876 - RLTR19 LTR ERVK -186 313 3 9 1077 388 154 31 0 chr12 64576656 64576721 -56680809 - RLTR19-int LTR ERVK -1 6136 6070 9 1077 2175 171 15 44 chr12 64576715 64577126 -56680404 - RLTR19-int LTR ERVK -1714 4423 4025 9 1077 2698 131 58 20 chr12 64577231 64577731 -56679799 - RLTR19-int LTR ERVK -2123 4014 3496 9 1077 627 183 2 6 chr12 64577769 64577895 -56679635 + ORR1A1 LTR MaLR 1 145 -249 9 1077 862 161 91 35 chr12 64577901 64578133 -56679397 - RLTR19-int LTR ERVK -2765 3372 3128 9 1077 4413 224 68 14 chr12 64578185 64579251 -56678279 - Lx2B LINE L1 -13 6987 5865 9 1077 1565 188 0 24 chr12 64579248 64579537 -56677993 + Lx2B LINE L1 5584 5865 -21 9 1077 1161 156 9 23 chr12 64579537 64579753 -56677777 - RLTR19-int LTR ERVK -3005 3132 2920 9 1077 1225 238 94 35 chr12 64580176 64580516 -56677014 + MTC LTR MaLR 62 421 0 9 1077 241 300 62 62 chr12 64581189 64581285 -56676245 - LTR16A LTR ERVL -197 254 159 9 1077 378 0 0 0 chr12 64581610 64581652 -56675878 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 9 1077 198 320 128 39 chr12 64581824 64581980 -56675550 + MIR SINE MIR 9 178 -84 9 1077 204 135 0 0 chr12 64582239 64582276 -56675254 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 9 1077 459 52 0 0 chr12 64582463 64582521 -56675009 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 1077 321 26 0 0 chr12 64582521 64582558 -56674972 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1077 1093 191 117 23 chr12 64582558 64582734 -56674796 + RMER17B LTR ERVK 236 435 -523 1 1077 380 20 0 20 chr12 64582734 64582784 -56674746 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1077 1093 191 117 23 chr12 64582784 64582864 -56674666 + RMER17B LTR ERVK 436 515 -443 1 1077 483 18 0 0 chr12 64582864 64582920 -56674610 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1077 21 0 0 0 chr12 64583062 64583083 -56674447 + AT_rich Low_complexity Low_complexity 1 21 0 1 1077 186 71 0 0 chr12 64584047 64584075 -56673455 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1077 578 321 40 101 chr12 64584157 64584495 -56673035 - MTE2a LTR MaLR -64 315 28 1 1077 393 324 28 0 chr12 64584496 64584604 -56672926 + B1_Mur1 SINE Alu 23 133 -16 1 1077 407 102 0 28 chr12 64584741 64584812 -56672718 - RLTR9B LTR ERVK -368 69 1 1 1077 316 153 53 53 chr12 64584813 64584889 -56672641 - ETnERV2-int LTR ERVK -2 7404 7329 1 1077 421 216 189 12 chr12 64585098 64585262 -56672268 - ETnERV2-int LTR ERVK -981 6425 6233 1 1077 417 233 19 28 chr12 64585368 64585474 -56672056 - ETnERV2-int LTR ERVK -1205 6201 6097 1 1077 14681 175 75 37 chr12 64585482 64586752 -56670778 - ETnERV2-int LTR ERVK -1230 4176 2874 1 1077 450 0 0 0 chr12 64586752 64586802 -56670728 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1077 14681 155 52 40 chr12 64586802 64586857 -56670673 - ETnERV2-int LTR ERVK -3475 3931 3871 1 1077 3228 48 2 2 chr12 64586857 64587251 -56670279 - MTA_Mm LTR MaLR -2 394 1 1 1077 14681 155 52 40 chr12 64587251 64589036 -56668494 - ETnERV2-int LTR ERVK -3536 3870 2059 1 1077 501 72 20 40 chr12 64589036 64589137 -56668393 + (TA)n Simple_repeat Simple_repeat 2 100 0 1 1077 14681 155 52 40 chr12 64589137 64590125 -56667405 - ETnERV2-int LTR ERVK -5348 2058 1079 1 1077 414 0 0 0 chr12 64590125 64590171 -56667359 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1077 193 57 28 28 chr12 64590191 64590227 -56667303 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1 1077 417 292 60 56 chr12 64590227 64590546 -56666984 - ETnERV2-int LTR ERVK -2991 323 4 1 1077 2103 113 148 13 chr12 64590548 64590933 -56666597 - RLTR9B LTR ERVK 0 437 1 1 1077 198 136 0 0 chr12 64591133 64591177 -56666353 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1077 28 0 0 0 chr12 64592048 64592076 -56665454 + AT_rich Low_complexity Low_complexity 1 28 0 1 1077 335 309 45 9 chr12 64592129 64592240 -56665290 - MTE2a LTR MaLR -71 308 194 1 1077 554 304 35 29 chr12 64592247 64592420 -56665110 - B3 SINE B2 -2 214 41 1 1077 551 285 62 0 chr12 64592533 64592677 -56664853 - B3 SINE B2 -16 200 48 1 1077 180 289 0 0 chr12 64593292 64593337 -56664193 + L2 LINE L2 1631 1675 -1744 1 1077 892 223 34 10 chr12 64594677 64594881 -56662649 + Lx9 LINE L1 6848 7056 -588 1 1077 546 143 0 0 chr12 64595152 64595243 -56662287 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1077 544 238 35 81 chr12 64595305 64595479 -56662051 + B2_Mm2 SINE B2 26 191 -4 1 1077 225 0 0 0 chr12 64595523 64595548 -56661982 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1 1077 1547 105 25 4 chr12 64595874 64596113 -56661417 + L1_Mus3 LINE L1 6393 6636 -2 1 1077 348 119 0 0 chr12 64596211 64596270 -56661260 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1077 598 320 37 78 chr12 64596294 64596511 -56661019 - B4A SINE B4 -1 291 84 1 1077 3137 56 0 0 chr12 64596521 64596912 -56660618 - L1_Mus1 LINE L1 -484 6083 5693 1 1077 3954 44 0 14 chr12 64596912 64597399 -56660131 + L1_Mus1 LINE L1 6088 6567 0 1 1077 481 253 24 78 chr12 64597399 64597430 -56660100 - L1MD3 LINE L1 -2264 5731 5704 1 1077 562 222 8 8 chr12 64597541 64597659 -56659871 - RMER10A LTR ERVL -324 118 1 1 1077 397 183 9 9 chr12 64598134 64598239 -56659291 + (TATATG)n Simple_repeat Simple_repeat 2 106 0 1 1077 743 305 81 28 chr12 64599001 64599460 -56658070 - MER89-int LTR ERV1 -140 6661 6179 1 1077 567 102 0 0 chr12 64599744 64599832 -56657698 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1077 27 49 0 0 chr12 64599905 64599946 -56657584 + AT_rich Low_complexity Low_complexity 1 41 0 1 1077 25 51 0 0 chr12 64600198 64600237 -56657293 + AT_rich Low_complexity Low_complexity 1 39 0 1 1077 22 56 0 0 chr12 64600269 64600305 -56657225 + AT_rich Low_complexity Low_complexity 1 36 0 1 1077 1445 281 32 15 chr12 64600609 64601021 -56656509 + MTD LTR MaLR 1 419 0 1 1077 1383 187 0 8 chr12 64601138 64601402 -56656128 - Lx LINE L1 -1 6653 6392 1 1077 28 29 0 0 chr12 64601648 64601683 -56655847 + AT_rich Low_complexity Low_complexity 1 35 0 1 1077 657 281 78 28 chr12 64601724 64602119 -56655411 - Lx9 LINE L1 0 7644 7230 1 1077 670 258 11 37 chr12 64602121 64602310 -56655220 + Lx9 LINE L1 6994 7177 -467 1 1077 327 104 0 0 chr12 64602536 64602584 -56654946 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1077 1002 111 0 0 chr12 64602584 64602728 -56654802 - B1_Mus1 SINE Alu 0 148 5 1 1077 565 294 102 50 chr12 64602732 64603251 -56654279 - L1MA6 LINE L1 -124 6176 5631 1 1077 225 279 65 37 chr12 64603481 64603589 -56653941 + MTEa LTR MaLR 269 379 0 1 1077 298 286 20 0 chr12 64603591 64603689 -56653841 - L1M2 LINE L1 -663 5637 5538 1 1077 304 293 20 41 chr12 64603760 64603906 -56653624 - L1M2 LINE L1 -798 5499 5357 1 1077 27 29 0 0 chr12 64604046 64604080 -56653450 + AT_rich Low_complexity Low_complexity 1 34 0 1 1077 242 190 35 0 chr12 64604481 64604539 -56652991 + T-rich Low_complexity Low_complexity 3 62 0 1 1077 438 275 17 0 chr12 64605506 64605626 -56651904 - RMER15 LTR ERVL -21 554 433 1 1077 8788 104 17 4 chr12 64605635 64607498 -56650032 + Lx3A LINE L1 5074 6967 -14 1 1077 884 79 0 8 chr12 64607498 64607625 -56649905 + (GAAA)n Simple_repeat Simple_repeat 3 128 0 1 1077 8788 124 27 7 chr12 64607625 64607644 -56649886 + Lx3A LINE L1 6968 6981 0 1 1077 452 222 81 58 chr12 64607774 64607946 -56649584 - RMER15 LTR ERVL -399 176 1 1 1077 459 100 0 0 chr12 64608210 64608280 -56649250 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1077 474 254 83 57 chr12 64609732 64609924 -56647606 + B3A SINE B2 2 198 0 1 1077 30 59 0 0 chr12 64610410 64610461 -56647069 + AT_rich Low_complexity Low_complexity 1 51 0 1 1077 776 191 39 6 chr12 64610462 64610641 -56646889 - Lx4A LINE L1 -3 7055 6871 1 1077 485 312 32 14 chr12 64610745 64610963 -56646567 - L1_Rod LINE L1 -81 5766 5545 1 1077 884 233 30 0 chr12 64610986 64611188 -56646342 + RLTR40 LTR ERVK 1 208 -609 1 1077 443 327 33 6 chr12 64611194 64611418 -56646112 - L1_Mm LINE L1 -345 5538 5303 1 1077 555 43 0 0 chr12 64611452 64611522 -56646008 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1077 2830 260 54 32 chr12 64611846 64612934 -56644596 - Lx2B LINE L1 -10 6990 5591 1 1077 277 231 0 30 chr12 64612919 64612986 -56644544 + Lx7 LINE L1 5703 5767 -1929 1 1077 21 36 0 0 chr12 64613532 64613560 -56643970 + AT_rich Low_complexity Low_complexity 1 28 0 1 1077 302 176 0 150 chr12 64615218 64615318 -56642212 + L1M4c LINE L1 687 771 -5613 1 1077 2679 84 39 18 chr12 64615318 64615708 -56641822 - MTB LTR MaLR -2 398 1 1 1077 1797 168 88 31 chr12 64615708 64616127 -56641403 - MTB-int LTR MaLR 0 1098 656 1 1077 4529 76 3 2 chr12 64616532 64617148 -56640382 - L1Md_F2 LINE L1 0 6582 5967 1 1077 6524 56 1 7 chr12 64617149 64618127 -56639403 + L1Md_F2 LINE L1 5042 6017 -565 1 134 6193 90 13 23 chr12 64618334 64619504 -56638026 - Lx3_Mus LINE L1 -480 6529 5380 1 1078 2929 84 36 23 chr12 64619505 64619943 -56637587 + Lx3_Mus LINE L1 6555 6998 -11 1 1078 309 51 0 0 chr12 64619974 64620013 -56637517 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 1 1078 5538 96 13 12 chr12 64620391 64620689 -56636841 - RLTR22_Mus LTR ERVK -983 825 520 1 1078 1173 61 0 0 chr12 64620689 64620836 -56636694 + B1_Mus1 SINE Alu 2 148 0 1 1078 5538 96 13 12 chr12 64620836 64621361 -56636169 - RLTR22_Mus LTR ERVK -1289 519 1 1 1078 381 310 119 23 chr12 64621572 64621790 -56635740 + Lx8 LINE L1 6067 6305 -1168 1 1078 409 294 31 39 chr12 64621817 64622075 -56635455 + Lx8 LINE L1 6362 6857 -616 1 1078 7111 110 29 6 chr12 64622067 64623202 -56634328 - Lx LINE L1 -3 6651 5492 1 1078 541 269 22 54 chr12 64623236 64623421 -56634109 + Lx8 LINE L1 6918 7096 -377 1 1078 195 139 0 0 chr12 64623449 64623485 -56634045 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 1078 264 91 0 0 chr12 64624066 64624110 -56633420 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1078 352 0 0 40 chr12 64624110 64624159 -56633371 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1078 391 316 116 93 chr12 64626020 64626278 -56631252 + MLT1D LTR MaLR 204 505 0 1 1078 192 40 0 0 chr12 64626512 64626537 -56630993 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 1078 529 290 53 32 chr12 64626736 64626925 -56630605 + MTEb LTR MaLR 141 333 -46 1 1078 391 325 24 0 chr12 64626953 64627079 -56630451 + MTE-int LTR MaLR 1 129 -1451 1 1078 421 331 52 37 chr12 64627097 64627288 -56630242 - MTE-int LTR MaLR -600 980 787 1 1078 261 0 0 0 chr12 64627322 64627351 -56630179 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1078 24 0 0 0 chr12 64627564 64627588 -56629942 + AT_rich Low_complexity Low_complexity 1 24 0 1 1078 343 194 27 27 chr12 64627857 64627931 -56629599 - MTE-int LTR MaLR -930 650 577 1 1078 1906 114 34 10 chr12 64628026 64628319 -56629211 - L1Md_F2 LINE L1 -17 6565 6266 1 1078 1280 106 0 0 chr12 64628322 64628501 -56629029 + L1Md_F2 LINE L1 5998 6176 -406 1 1078 747 276 85 46 chr12 64628524 64628893 -56628637 - MTE-int LTR MaLR -1116 464 1 1 1078 292 330 57 0 chr12 64628895 64629001 -56628529 - MTEb LTR MaLR -267 112 1 1 1078 249 108 0 0 chr12 64629747 64629784 -56627746 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 1 1078 214 191 0 21 chr12 64629881 64629929 -56627601 + A-rich Low_complexity Low_complexity 2 48 0 1 1078 183 42 0 0 chr12 64630579 64630603 -56626927 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1078 348 431 40 32 chr12 64630927 64631174 -56626356 - LTR16A LTR ERVL -49 402 154 1 1078 312 299 101 27 chr12 64631246 64631394 -56626136 + L1M5 LINE L1 5447 5605 -557 1 1078 1210 74 0 18 chr12 64631430 64631649 -56625881 + (TTTC)n Simple_repeat Simple_repeat 1 214 0 1 1078 1518 185 18 47 chr12 64631649 64631990 -56625540 - RMER1B Other Other -13 1053 723 1 1078 1586 246 57 37 chr12 64632051 64632214 -56625316 - MTC LTR MaLR -8 413 253 1 1078 336 24 0 0 chr12 64632214 64632255 -56625275 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1078 1586 246 57 37 chr12 64632255 64632301 -56625229 - MTC LTR MaLR -169 252 207 1 1078 2309 144 62 2 chr12 64632301 64632704 -56624826 - L1_Mus4 LINE L1 0 6636 6210 1 1078 1586 246 57 37 chr12 64632704 64632898 -56624632 - MTC LTR MaLR -215 206 1 1 1078 240 306 14 0 chr12 64633363 64633435 -56624095 + MTEb LTR MaLR 1 73 -306 1 1078 31 44 0 0 chr12 64633435 64633480 -56624050 + AT_rich Low_complexity Low_complexity 1 45 0 1 1078 1001 296 113 13 chr12 64633480 64634175 -56623355 - Lx8 LINE L1 -2 7471 6678 1 1078 246 62 0 0 chr12 64634175 64634207 -56623323 + (TTG)n Simple_repeat Simple_repeat 3 34 0 1 1078 1001 315 53 3 chr12 64634207 64634263 -56623267 - Lx8 LINE L1 -796 6677 6620 1 1078 5790 71 7 12 chr12 64634309 64635082 -56622448 + L1Md_F2 LINE L1 5802 6570 -12 1 1078 1817 237 19 42 chr12 64635090 64635500 -56622030 - MTC LTR MaLR -20 401 1 1 1078 365 266 105 0 chr12 64635534 64635658 -56621872 - Lx8 LINE L1 -931 6542 6406 1 1078 414 148 10 19 chr12 64635806 64635909 -56621621 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 1078 751 322 71 15 chr12 64635927 64636252 -56621278 + MTE-int LTR MaLR 1110 1452 -128 1 1078 200 216 30 40 chr12 64636553 64636654 -56620876 + (TTATA)n Simple_repeat Simple_repeat 3 102 0 2 1078 1099 75 7 0 chr12 64636707 64636853 -56620677 - B1_Mus2 SINE Alu 0 147 1 2 1078 570 222 100 5 chr12 64637577 64637686 -56619844 - Lx9 LINE L1 -29 7615 7498 2 1078 342 0 0 0 chr12 64637686 64637724 -56619806 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1078 570 222 100 5 chr12 64637724 64637804 -56619726 - Lx9 LINE L1 -147 7497 7408 2 1078 2482 241 107 7 chr12 64638545 64639226 -56618304 - Lx9 LINE L1 -4 7640 6892 2 1078 200 333 0 0 chr12 64639621 64639690 -56617840 + (TATG)n Simple_repeat Simple_repeat 3 71 0 2 1078 227 255 0 0 chr12 64639642 64639689 -56617841 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1078 24 67 0 0 chr12 64640186 64640231 -56617299 + AT_rich Low_complexity Low_complexity 1 45 0 2 1078 234 288 100 52 chr12 64640662 64640911 -56616619 - LTR37B LTR ERV1 -67 401 141 2 1078 1481 231 9 72 chr12 64640932 64641278 -56616252 - RMER5 LTR ERV1 0 534 211 2 1078 933 148 7 0 chr12 64641328 64641477 -56616053 + URR1B DNA MER1_type 76 225 0 2 1078 761 226 83 16 chr12 64641479 64641672 -56615858 - RMER5 LTR ERV1 -328 206 1 2 1078 3862 214 142 14 chr12 64642352 64643462 -56614068 - Lx3C LINE L1 -2 6974 5722 2 1078 432 0 0 0 chr12 64643679 64643727 -56613803 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1078 222 130 34 85 chr12 64643792 64643851 -56613679 + T-rich Low_complexity Low_complexity 2 57 0 2 1078 6141 198 33 35 chr12 64643855 64645751 -56611779 - Lx5 LINE L1 0 7050 5153 2 1078 237 122 0 89 chr12 64645751 64645796 -56611734 + RLTRETN_Mm LTR ERVK 1 41 -281 2 1078 729 231 173 43 chr12 64645765 64646117 -56611413 + RLTR9E LTR ERVK 5 402 -7 2 1078 1358 148 37 4 chr12 64646129 64646373 -56611157 - Lx5 LINE L1 -724 5153 4902 2 1078 830 153 7 0 chr12 64646373 64646517 -56611013 - Lx5 LINE L1 -2412 3465 3321 2 1078 2189 141 36 18 chr12 64646543 64646927 -56610603 - Lx2 LINE L1 -2 6995 6605 2 1078 2194 113 39 0 chr12 64646928 64647336 -56610194 + L1VL4 LINE L1 619 1042 -2517 2 1078 2641 182 99 7 chr12 64647348 64647891 -56609639 - Lx4A LINE L1 -153 6905 6313 2 1078 928 177 12 0 chr12 64647893 64648057 -56609473 + Lx4A LINE L1 6158 6323 -735 2 1078 7255 190 66 99 chr12 64648052 64649422 -56608108 - Lx5 LINE L1 -2542 3335 2061 2 1078 435 38 0 0 chr12 64649422 64649475 -56608055 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1078 7255 188 52 67 chr12 64649475 64650611 -56606919 - Lx5 LINE L1 -3817 2060 896 2 1078 605 154 0 51 chr12 64650773 64650910 -56606620 - L1Md_F3 LINE L1 -2 6582 6453 2 1078 1212 93 0 0 chr12 64651119 64651291 -56606239 + (TTTCC)n Simple_repeat Simple_repeat 4 175 0 2 1078 432 0 0 0 chr12 64651291 64651339 -56606191 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1078 477 320 102 45 chr12 64651447 64651712 -56605818 + MTE2b LTR MaLR 66 345 -34 2 1078 1352 226 42 7 chr12 64655174 64655482 -56602048 + Lx6 LINE L1 7136 7454 -6 2 1078 27 73 0 0 chr12 64655725 64655780 -56601750 + AT_rich Low_complexity Low_complexity 1 55 0 2 1078 413 293 56 16 chr12 64655786 64655911 -56601619 - B1F SINE Alu -7 142 13 2 1078 32 43 0 0 chr12 64656116 64656162 -56601368 + AT_rich Low_complexity Low_complexity 1 46 0 2 1078 21 82 0 0 chr12 64656598 64656647 -56600883 + AT_rich Low_complexity Low_complexity 1 49 0 2 1078 21 57 0 0 chr12 64656706 64656741 -56600789 + AT_rich Low_complexity Low_complexity 1 35 0 2 1078 22 0 0 0 chr12 64656797 64656819 -56600711 + AT_rich Low_complexity Low_complexity 1 22 0 2 1078 608 274 96 46 chr12 64657525 64657870 -56599660 - Lx7 LINE L1 -6 7690 7329 2 1078 307 95 31 31 chr12 64657880 64657945 -56599585 + A-rich Low_complexity Low_complexity 5 69 0 2 1078 517 290 17 79 chr12 64657951 64658191 -56599339 - Lx7 LINE L1 -357 7339 7115 2 1078 459 35 0 0 chr12 64659393 64659450 -56598080 + (TAA)n Simple_repeat Simple_repeat 3 59 0 2 1078 408 200 164 39 chr12 64659707 64659811 -56597719 + URR1A DNA MER1_type 7 123 -103 2 1078 702 150 0 0 chr12 64659855 64659968 -56597562 + URR1A DNA MER1_type 113 225 -1 2 1078 234 188 21 0 chr12 64660214 64660262 -56597268 - MTD LTR MaLR -15 404 356 2 1078 36 97 0 0 chr12 64660654 64660767 -56596763 + AT_rich Low_complexity Low_complexity 1 113 0 2 1078 1770 293 48 25 chr12 64661640 64662245 -56595285 - Lx7 LINE L1 -336 7360 6742 2 1078 715 333 68 42 chr12 64662331 64662761 -56594769 - Lx8 LINE L1 -515 6945 6529 2 1078 279 130 0 0 chr12 64662868 64662922 -56594608 + (A)n Simple_repeat Simple_repeat 1 54 0 2 1078 2255 168 10 0 chr12 64663270 64663686 -56593844 + L1Md_F2 LINE L1 5041 5460 -423 2 1078 570 45 0 0 chr12 64664285 64664352 -56593178 + L1Md_F2 LINE L1 5520 5586 -297 2 1078 7953 53 2 0 chr12 64664352 64665341 -56592189 + L1Md_F2 LINE L1 5587 6577 -5 2 1078 210 37 0 0 chr12 64665389 64665416 -56592114 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1078 229 319 87 11 chr12 64665728 64665820 -56591710 + RMER4B LTR ERVK 458 556 -29 2 1078 1180 81 81 6 chr12 64666289 64666462 -56591068 - B2_Mm2 SINE B2 -8 187 2 2 1078 3282 253 62 17 chr12 64666706 64667632 -56589898 + Lx5 LINE L1 6081 7047 -3 2 1078 1374 239 47 35 chr12 64668312 64668874 -56588656 - RMER12 LTR ERVK -1265 583 13 2 1078 238 80 20 20 chr12 64668877 64668928 -56588602 + Lx2 LINE L1 6946 6996 -1 2 1078 327 264 50 0 chr12 64668994 64669115 -56588415 + Lx6 LINE L1 7308 7434 -26 2 1078 692 226 42 36 chr12 64670179 64670372 -56587158 - Lx4B LINE L1 -17 7041 6848 2 1078 35373 45 6 3 chr12 64671149 64676375 -56581155 + L1Md_T LINE L1 253 5589 -297 2 1078 8934 8 0 0 chr12 64676375 64677371 -56580159 + L1Md_T LINE L1 5590 6585 0 2 1078 23366 25 2 0 chr12 64677812 64680590 -56576940 + L1Md_T LINE L1 2803 5586 -297 2 1078 8404 34 1 0 chr12 64680590 64681583 -56575947 + L1Md_T LINE L1 5587 6580 -2 2 1078 642 210 65 0 chr12 64681601 64681725 -56575805 + B1_Mur4 SINE Alu 11 142 -8 2 1078 474 137 0 0 chr12 64681733 64681828 -56575702 + (CATA)n Simple_repeat Simple_repeat 2 96 0 2 1078 25 0 0 0 chr12 64681949 64681974 -56575556 + AT_rich Low_complexity Low_complexity 1 25 0 2 1078 225 0 0 0 chr12 64682905 64682930 -56574600 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1078 331 339 26 0 chr12 64683846 64683961 -56573569 + B3A SINE B2 20 137 -61 2 1078 462 18 0 0 chr12 64684025 64684080 -56573450 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1078 520 337 72 5 chr12 64684138 64684332 -56573198 - B4A SINE B4 -85 207 1 2 1078 272 250 184 0 chr12 64686022 64686163 -56571367 - L1M2 LINE L1 -394 5897 5719 2 1078 6563 88 14 0 chr12 64686257 64687151 -56570379 + L1_Mus1 LINE L1 5661 6567 0 2 1078 653 340 68 48 chr12 64687161 64687747 -56569783 + Lx7 LINE L1 6643 7240 -456 2 1078 283 268 37 0 chr12 64687803 64687885 -56569645 + GA-rich Low_complexity Low_complexity 1 85 0 2 1078 258 234 0 112 chr12 64688023 64688148 -56569382 + L1M2 LINE L1 5320 5430 -867 2 1078 247 209 47 0 chr12 64689244 64689330 -56568200 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1078 396 191 98 14 chr12 64689336 64689479 -56568051 + Lx9 LINE L1 7486 7640 -4 2 1078 512 266 105 11 chr12 64689902 64690092 -56567438 + L1M2 LINE L1 5434 5641 -656 2 1078 612 171 7 67 chr12 64690116 64690266 -56567264 - L1_Mur3 LINE L1 -3919 1961 1821 2 1078 774 295 128 59 chr12 64690998 64691741 -56565789 + L1MC2 LINE L1 5335 6128 -216 2 1078 195 42 0 0 chr12 64694338 64694362 -56563168 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1078 305 156 33 0 chr12 64694814 64694941 -56562589 + CT-rich Low_complexity Low_complexity 1 131 0 2 1078 1394 97 5 0 chr12 64695319 64695526 -56562004 - L1Md_F2 LINE L1 0 6582 6375 2 1078 293 266 184 0 chr12 64695555 64695664 -56561866 + RMER15 LTR ERVL 432 560 -15 2 1078 3539 60 2 11 chr12 64697549 64698007 -56559523 - L1Md_F2 LINE L1 -2 6580 6127 2 1078 22 35 0 0 chr12 64698022 64698051 -56559479 + AT_rich Low_complexity Low_complexity 1 29 0 2 1078 201 175 0 0 chr12 64698178 64698218 -56559312 + (CATA)n Simple_repeat Simple_repeat 4 43 0 2 1078 243 324 170 9 chr12 64698295 64698507 -56559023 - Lx9 LINE L1 -319 7325 7080 2 1078 1005 9 0 0 chr12 64698512 64698626 -56558904 + (GA)n Simple_repeat Simple_repeat 1 114 0 2 1078 4071 143 101 31 chr12 64699064 64699172 -56558358 - Lx2 LINE L1 0 6997 6886 2 1078 201 74 0 0 chr12 64699172 64699199 -56558331 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 2 1078 4071 143 101 31 chr12 64699199 64699900 -56557630 - Lx2 LINE L1 -112 6885 6133 2 1078 257 275 11 11 chr12 64699893 64699985 -56557545 - Lx2B LINE L1 -8 6630 6539 2 1078 630 241 33 171 chr12 64699986 64700342 -56557188 - RMER17B LTR ERVK -66 892 567 2 1078 231 216 0 0 chr12 64700337 64700374 -56557156 - RLTR26 LTR ERVK -605 37 1 2 1078 5730 168 47 6 chr12 64700376 64702146 -56555384 - Lx2B LINE L1 -265 6735 4997 2 1078 30 77 0 0 chr12 64703560 64703625 -56553905 + AT_rich Low_complexity Low_complexity 1 65 0 2 1078 263 324 42 0 chr12 64703681 64703752 -56553778 - ID4_ SINE ID -5 78 5 2 1078 345 24 0 0 chr12 64703752 64703794 -56553736 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1078 306 50 0 0 chr12 64703854 64703894 -56553636 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1078 377 208 22 27 chr12 64705566 64705663 -56551867 - MTC LTR MaLR 0 421 228 2 1078 414 0 0 0 chr12 64705670 64705716 -56551814 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1078 200 143 0 23 chr12 64705731 64705774 -56551756 + C-rich Low_complexity Low_complexity 6 47 0 2 1078 810 166 0 0 chr12 64705813 64705964 -56551566 + CT-rich Low_complexity Low_complexity 2 152 0 2 1078 216 365 71 59 chr12 64705968 64705992 -56551538 - B4A SINE B4 -46 246 165 2 1078 575 208 123 16 chr12 64705992 64706114 -56551416 - B1_Mur3 SINE Alu -6 143 9 2 1078 216 365 71 59 chr12 64706114 64706137 -56551393 - B4A SINE B4 -46 164 76 2 1078 555 242 143 37 chr12 64706119 64706308 -56551222 - MTC LTR MaLR -212 209 1 2 1078 4547 43 4 0 chr12 64707174 64707731 -56549799 + L1Md_F2 LINE L1 6020 6578 -4 2 1078 444 297 42 0 chr12 64707742 64707860 -56549670 + B4 SINE B4 95 217 -75 2 1078 22 35 0 0 chr12 64707860 64707889 -56549641 + AT_rich Low_complexity Low_complexity 1 29 0 2 1078 305 180 16 0 chr12 64708331 64708392 -56549138 - MTD LTR MaLR -14 405 344 2 1078 202 220 0 0 chr12 64708392 64708442 -56549088 + T-rich Low_complexity Low_complexity 1 50 0 2 1078 1045 241 29 35 chr12 64708466 64708780 -56548750 - Lx7 LINE L1 -16 7680 7369 2 1078 1149 252 44 30 chr12 64708791 64709130 -56548400 - MTD LTR MaLR -62 357 14 2 1078 1024 277 82 17 chr12 64709138 64709494 -56548036 - MTEb LTR MaLR 0 379 1 2 1078 367 361 156 41 chr12 64709714 64710104 -56547426 + MLT2B1 LTR ERVL 8 442 -78 3 1078 423 0 0 0 chr12 64710115 64710162 -56547368 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1078 306 50 0 0 chr12 64710162 64710201 -56547329 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1078 809 94 0 0 chr12 64710855 64710961 -56546569 + U6 snRNA snRNA 2 107 0 3 1078 26882 80 13 39 chr12 64710961 64714967 -56542563 + L1Md_F2 LINE L1 1686 5586 -297 3 1078 7308 83 1 5 chr12 64714967 64715967 -56541563 + L1Md_F2 LINE L1 5587 6582 0 3 1078 1207 112 15 36 chr12 64716378 64716491 -56541039 - B2_Mm2 SINE B2 -4 191 82 3 1078 2379 96 11 35 chr12 64716491 64716857 -56540673 + IAPEY2_LTR LTR ERVK 1 357 0 3 1078 1207 112 15 36 chr12 64716857 64716938 -56540592 - B2_Mm2 SINE B2 -114 81 1 3 1078 22 56 0 0 chr12 64717451 64717487 -56540043 + AT_rich Low_complexity Low_complexity 1 36 0 3 1078 4154 141 24 31 chr12 64717696 64718445 -56539085 - Lx LINE L1 -3 6651 5908 3 1078 2178 99 60 1 chr12 64718448 64718836 -56538694 + Lx LINE L1 5515 5921 -733 3 1078 2666 140 155 8 chr12 64718837 64719334 -56538196 - Lx3A LINE L1 -8 6973 6404 3 1078 406 309 32 8 chr12 64719840 64719964 -56537566 + B3 SINE B2 15 141 -75 3 1078 21 71 0 0 chr12 64720018 64720060 -56537470 + AT_rich Low_complexity Low_complexity 1 42 0 3 1078 413 48 32 0 chr12 64720416 64720479 -56537051 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 1078 576 53 0 0 chr12 64720479 64720555 -56536975 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1078 223 49 24 24 chr12 64720655 64720697 -56536833 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 3 1078 373 336 51 22 chr12 64721116 64721286 -56536244 - B3 SINE B2 -4 212 39 3 1078 351 0 0 0 chr12 64721826 64721865 -56535665 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1078 2893 78 0 8 chr12 64722896 64723283 -56534247 - L1Md_F2 LINE L1 -15 6567 6184 3 1078 207 274 58 16 chr12 64724298 64724380 -56533150 - L2a LINE L2 -7 3419 3284 3 1078 216 0 0 0 chr12 64724963 64724987 -56532543 + (CTGTG)n Simple_repeat Simple_repeat 1 24 0 3 1078 257 0 30 0 chr12 64725778 64725811 -56531719 + (TTG)n Simple_repeat Simple_repeat 3 36 0 3 1078 360 0 0 0 chr12 64726235 64726275 -56531255 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1078 1150 234 65 31 chr12 64726492 64726907 -56530623 + Lx9 LINE L1 7209 7637 -7 3 1078 195 250 57 29 chr12 64727509 64727579 -56529951 + MIRc SINE MIR 114 185 -83 3 1078 5275 161 16 67 chr12 64728784 64729420 -56528110 + L1Md_F3 LINE L1 290 919 -5805 3 1078 7178 55 36 4 chr12 64729420 64730351 -56527179 + L1Md_F2 LINE L1 5620 6580 -2 3 1078 31875 78 7 6 chr12 64730351 64735048 -56522482 + L1Md_F3 LINE L1 920 5586 -297 3 1078 7780 55 12 1 chr12 64735048 64736035 -56521495 + L1Md_F3 LINE L1 5587 6584 0 3 1078 1840 151 31 6 chr12 64736101 64736421 -56521109 - Lx2 LINE L1 -2 6995 6668 3 1078 243 164 98 0 chr12 64736442 64736503 -56521027 - Lx9 LINE L1 -4 7640 7574 3 1078 790 60 26 0 chr12 64736506 64736622 -56520908 + (TAGA)n Simple_repeat Simple_repeat 1 119 0 3 1078 501 266 4 132 chr12 64737016 64737250 -56520280 + Lx2B LINE L1 6788 6991 -9 3 1078 351 278 13 142 chr12 64737608 64737763 -56519767 - ID_B1 SINE B4 -2 222 88 3 1078 28 79 0 0 chr12 64737912 64737975 -56519555 + AT_rich Low_complexity Low_complexity 1 63 0 3 1078 285 320 30 10 chr12 64738507 64738608 -56518922 + Lx9 LINE L1 7091 7193 -451 3 1078 432 0 0 0 chr12 64739004 64739052 -56518478 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1078 2522 127 81 26 chr12 64739995 64740430 -56517100 - Lx LINE L1 -3 6579 6154 3 1078 2400 165 7 22 chr12 64740428 64740844 -56516686 + L1_Mur2 LINE L1 5035 5448 -429 3 1078 2337 90 37 20 chr12 64740844 64741195 -56516335 + RLTR10D LTR ERVK 1 357 -2 3 1078 2400 165 7 22 chr12 64741195 64741242 -56516288 + L1_Mur2 LINE L1 5449 5491 -386 3 1078 210 156 0 0 chr12 64741290 64741335 -56516195 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 3 1078 378 0 0 0 chr12 64741472 64741514 -56516016 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1078 501 342 74 3 chr12 64741715 64742026 -56515504 + L1MA7 LINE L1 5438 5770 -521 3 1078 315 284 54 83 chr12 64742146 64742388 -56515142 + L1MA7 LINE L1 5749 5983 -308 3 1078 1078 284 108 8 chr12 64742414 64742766 -56514764 + MTD LTR MaLR 1 387 -32 3 1078 250 296 0 0 chr12 64742891 64742999 -56514531 + L1MA7 LINE L1 6180 6287 -4 3 1078 277 176 88 0 chr12 64743025 64743093 -56514437 - MER67C LTR ERV1 -68 643 570 3 1078 1108 82 0 0 chr12 64743425 64743572 -56513958 - B1_Mus1 SINE Alu 0 148 2 3 1078 671 257 78 60 chr12 64743572 64743884 -56513646 - Lx7 LINE L1 -22 7674 7356 3 1078 770 339 54 0 chr12 64744610 64744870 -56512660 + B4A SINE B4 19 292 0 3 1078 980 348 74 43 chr12 64745021 64745170 -56512360 - Lx8 LINE L1 -787 6686 6525 3 1078 213 39 0 0 chr12 64745170 64745196 -56512334 + (TAG)n Simple_repeat Simple_repeat 1 26 0 3 1078 980 348 74 43 chr12 64745196 64745911 -56511619 - Lx8 LINE L1 -949 6524 5795 3 1078 186 71 0 0 chr12 64746436 64746464 -56511066 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1078 200 149 21 0 chr12 64747631 64747678 -56509852 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1078 458 377 73 48 chr12 64747861 64747914 -56509616 - Lx8 LINE L1 -195 7278 7229 3 1078 804 63 0 0 chr12 64747914 64748025 -56509505 + (TC)n Simple_repeat Simple_repeat 2 112 0 3 1078 458 377 73 48 chr12 64748025 64748802 -56508728 - Lx8 LINE L1 -245 7228 6427 3 134 7674 81 18 66 chr12 64748864 64750583 -56506947 - L1Md_F2 LINE L1 0 6582 4998 3 1079 5681 68 3 3 chr12 64750573 64751329 -56506201 + L1Md_F2 LINE L1 4250 5005 -878 3 1079 347 294 68 91 chr12 64751329 64751697 -56505833 - Lx8 LINE L1 -1078 6395 6036 3 1079 584 296 21 0 chr12 64751684 64751870 -56505660 - Lx8 LINE L1 -179 5701 5512 3 1079 210 233 141 94 chr12 64751909 64752037 -56505493 + L2a LINE L2 3284 3417 -9 3 1079 30 0 0 0 chr12 64752069 64752099 -56505431 + AT_rich Low_complexity Low_complexity 1 30 0 3 1079 383 149 14 0 chr12 64752449 64752523 -56505007 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1079 243 316 199 28 chr12 64752571 64752747 -56504783 + B3 SINE B2 1 206 -10 3 1079 332 310 8 74 chr12 64752943 64753065 -56504465 + RSINE1 SINE B4 37 150 -15 3 1079 4090 129 6 13 chr12 64753165 64753757 -56503773 + Lx LINE L1 6028 6617 -37 3 1079 3899 101 2 2 chr12 64753757 64754305 -56503225 - L1_Mus2 LINE L1 -12 6554 6007 3 1079 4090 129 6 13 chr12 64754305 64754341 -56503189 + Lx LINE L1 6618 6652 -2 3 1079 1278 65 0 0 chr12 64754977 64755145 -56502385 - L1Md_T LINE L1 0 6582 6415 3 1079 605 209 11 169 chr12 64756228 64756406 -56501124 + B1_Mur4 SINE Alu 1 150 0 3 1079 204 97 0 0 chr12 64756446 64756477 -56501053 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1079 396 264 121 7 chr12 64756592 64756741 -56500789 - Lx9 LINE L1 -249 7395 7230 3 1079 30 59 0 0 chr12 64756825 64756876 -56500654 + AT_rich Low_complexity Low_complexity 1 51 0 3 1079 266 262 22 39 chr12 64756921 64757100 -56500430 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 3 1079 302 340 10 10 chr12 64757180 64757281 -56500249 + RMER15 LTR ERVL 300 400 -175 3 1079 1520 285 34 108 chr12 64757378 64758192 -56499338 + Lx7 LINE L1 6576 7329 -367 3 1079 192 77 0 0 chr12 64758194 64758220 -56499310 + (CTG)n Simple_repeat Simple_repeat 1 26 0 3 1079 549 80 0 0 chr12 64758244 64758319 -56499211 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 3 1079 6881 73 10 9 chr12 64758321 64759256 -56498274 - L1Md_F2 LINE L1 -2 6580 5668 3 1079 495 232 87 52 chr12 64759264 64759550 -56497980 + Lx7 LINE L1 7401 7696 0 3 1079 348 289 0 0 chr12 64759643 64759719 -56497811 + ID_B1 SINE B4 102 177 -47 3 1079 260 318 11 54 chr12 64759719 64759736 -56497794 + PB1D10 SINE Alu 21 109 -8 3 1079 314 383 28 7 chr12 64759776 64759918 -56497612 + LTR33C LTR ERVL 125 269 -360 3 1079 306 0 0 0 chr12 64760264 64760298 -56497232 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1079 26 30 0 0 chr12 64760671 64760704 -56496826 + AT_rich Low_complexity Low_complexity 1 33 0 3 1079 425 347 8 0 chr12 64761237 64761357 -56496173 + B3 SINE B2 3 123 -93 3 1079 318 336 31 39 chr12 64761357 64761484 -56496046 + RMER20A LTR ERVK 1 126 -390 3 1079 23 0 0 0 chr12 64761976 64761999 -56495531 + AT_rich Low_complexity Low_complexity 1 23 0 3 1079 1086 270 76 3 chr12 64761999 64762289 -56495241 + ORR1D1 LTR MaLR 23 333 -41 3 1079 364 319 43 43 chr12 64762603 64762744 -56494786 - B1F SINE Alu -1 148 8 3 1079 3475 18 2 0 chr12 64763549 64763944 -56493586 - MTA_Mm LTR MaLR 0 396 1 3 1079 360 77 0 0 chr12 64764329 64764381 -56493149 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1079 633 357 112 4 chr12 64764685 64765174 -56492356 + Lx7 LINE L1 6755 7296 -400 3 1079 367 60 20 0 chr12 64765173 64765223 -56492307 + Lx3A LINE L1 6664 6714 -267 3 1079 2502 82 3 6 chr12 64765221 64765565 -56491965 - L1_Mm LINE L1 -279 5604 5262 3 1079 1780 67 0 0 chr12 64765565 64765946 -56491584 + L1_Mus2 LINE L1 6336 6566 0 3 1079 253 277 88 42 chr12 64766377 64766592 -56490938 + Lx7 LINE L1 7471 7695 -1 3 1079 21 57 0 0 chr12 64767324 64767359 -56490171 + AT_rich Low_complexity Low_complexity 1 35 0 3 1079 2444 176 24 17 chr12 64767478 64767945 -56489585 - Lx3A LINE L1 -8 6973 6504 3 1079 21 0 0 0 chr12 64768039 64768060 -56489470 + AT_rich Low_complexity Low_complexity 1 21 0 3 1079 28 48 0 0 chr12 64768261 64768303 -56489227 + AT_rich Low_complexity Low_complexity 1 42 0 3 1079 468 340 72 29 chr12 64768379 64768655 -56488875 + RMER15 LTR ERVL 286 573 -2 3 1079 1057 51 14 0 chr12 64769764 64769902 -56487628 + B1_Mus1 SINE Alu 1 140 -8 3 1079 236 53 26 0 chr12 64769902 64769940 -56487590 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1079 351 398 82 22 chr12 64770277 64770593 -56486937 + MLT1A0 LTR MaLR 16 350 -15 3 1079 623 307 11 0 chr12 64771835 64772024 -56485506 + Lx7 LINE L1 6911 7101 -595 3 1079 742 169 12 0 chr12 64772069 64772235 -56485295 + GA-rich Low_complexity Low_complexity 2 169 0 3 1079 270 350 41 0 chr12 64772283 64772380 -56485150 - B1F SINE Alu -9 140 40 3 1079 459 0 0 0 chr12 64772645 64772696 -56484834 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1079 3295 132 10 0 chr12 64773397 64774117 -56483413 - Lx LINE L1 -640 6014 5289 3 1079 8121 66 28 4 chr12 64774125 64775480 -56482050 - L1Md_F2 LINE L1 -15 6567 5091 4 1079 4528 96 6 11 chr12 64775480 64776141 -56481389 - L1Md_F2 LINE L1 -1 6581 5924 4 1079 1127 183 113 3 chr12 64776141 64776258 -56481272 - L1Md_F2 LINE L1 -793 5090 4974 4 1079 2941 170 66 3 chr12 64776261 64776835 -56480695 + Lx LINE L1 6040 6649 -5 4 1079 26 0 0 0 chr12 64776981 64777007 -56480523 + AT_rich Low_complexity Low_complexity 1 26 0 4 1079 22 0 0 0 chr12 64777200 64777222 -56480308 + AT_rich Low_complexity Low_complexity 1 22 0 4 1079 696 83 0 0 chr12 64777479 64777575 -56479955 + (GA)n Simple_repeat Simple_repeat 1 96 0 4 1079 722 120 8 0 chr12 64777579 64777704 -56479826 + (TAG)n Simple_repeat Simple_repeat 3 128 0 4 1079 22 80 0 0 chr12 64777997 64778047 -56479483 + AT_rich Low_complexity Low_complexity 1 50 0 4 1079 29 70 0 0 chr12 64778094 64778151 -56479379 + AT_rich Low_complexity Low_complexity 1 57 0 4 1079 180 0 0 0 chr12 64778482 64778502 -56479028 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1079 319 354 63 57 chr12 64780255 64780446 -56477084 - MTE-int LTR MaLR -30 1550 1352 4 1079 885 74 22 0 chr12 64780446 64780581 -56476949 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 4 1079 319 354 63 57 chr12 64780581 64780755 -56476775 - MTE-int LTR MaLR -229 1351 1183 4 1079 279 365 39 59 chr12 64780827 64781031 -56476499 - MTE-int LTR MaLR -1141 439 240 4 1079 28517 73 2 1 chr12 64782359 64786917 -56470613 - L1Md_F2 LINE L1 0 6582 2024 4 1079 3444 217 50 178 chr12 64786915 64787797 -56469733 + L1_Mur1 LINE L1 4019 4738 -1148 4 1079 6246 35 0 0 chr12 64787797 64788537 -56468993 + L1Md_A LINE L1 5842 6581 -1 4 1079 3444 217 50 178 chr12 64788537 64788681 -56468849 + L1_Mur1 LINE L1 4739 4787 -1099 4 1079 477 16 0 0 chr12 64788681 64788743 -56468787 + L1Md_T LINE L1 6520 6581 -1 4 1079 3444 217 50 178 chr12 64788743 64789563 -56467967 + L1_Mur1 LINE L1 4788 5629 -257 4 1079 3955 212 58 9 chr12 64789569 64790424 -56467106 + Lx4B LINE L1 6161 7057 -1 4 1079 249 33 0 0 chr12 64790425 64790455 -56467075 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1079 459 35 0 0 chr12 64790758 64790815 -56466715 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 4 1079 1877 237 79 28 chr12 64791530 64792038 -56465492 - RLTR40 LTR ERVK -5 812 279 4 1079 1164 119 5 110 chr12 64792053 64792271 -56465259 + RMER16 LTR ERVK 253 447 -86 4 1079 624 119 0 0 chr12 64792278 64792396 -56465134 + (GA)n Simple_repeat Simple_repeat 2 119 0 4 1079 510 186 59 0 chr12 64792433 64792551 -56464979 - RLTR40 LTR ERVK -548 269 145 4 1079 35349 36 0 0 chr12 64792552 64798214 -56459316 + L1Md_T LINE L1 1 5589 -297 4 1079 8979 6 0 0 chr12 64798214 64799210 -56458320 + L1Md_T LINE L1 5590 6585 0 4 1079 22 0 0 0 chr12 64799257 64799279 -56458251 + AT_rich Low_complexity Low_complexity 1 22 0 4 1079 3682 48 2 9 chr12 64799279 64799745 -56457785 - L1Md_F3 LINE L1 -16 6568 6106 4 1079 34342 82 5 6 chr12 64799767 64805005 -56452525 - L1Md_F3 LINE L1 0 5883 654 4 1079 575 191 43 0 chr12 64805008 64805123 -56452407 - RLTR40 LTR ERVK -697 120 1 4 1079 600 282 0 0 chr12 64806185 64806334 -56451196 + B1_Mur2 SINE Alu 1 149 0 4 1079 803 283 105 30 chr12 64806907 64807268 -56450262 - Lx8 LINE L1 -86 7387 7000 4 1079 315 163 39 58 chr12 64808049 64808205 -56449325 + (TA)n Simple_repeat Simple_repeat 2 154 0 4 1079 257 196 36 0 chr12 64809417 64809473 -56448057 + Lx2 LINE L1 6765 6822 -175 4 1079 25 51 0 0 chr12 64809901 64809940 -56447590 + AT_rich Low_complexity Low_complexity 1 39 0 4 1079 396 40 0 0 chr12 64810540 64810590 -56446940 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1079 232 230 52 73 chr12 64811487 64811735 -56445795 - RMER17D2 LTR ERVK -326 483 241 4 1079 5444 67 16 1 chr12 64811786 64812491 -56445039 - L1_Mus1 LINE L1 0 6567 5853 4 1079 2549 118 6 0 chr12 64812491 64812856 -56444674 + L1_Mus1 LINE L1 5494 5860 -23 4 1079 249 119 0 0 chr12 64812955 64812997 -56444533 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1079 18429 105 235 32 chr12 64813045 64815428 -56442102 + L1Md_F LINE L1 214 3144 -2739 4 1079 228 343 40 20 chr12 64815428 64815529 -56442001 + B1F1 SINE Alu 46 148 -1 4 1079 18429 105 235 32 chr12 64815529 64817511 -56440019 + L1Md_F LINE L1 3145 5585 -298 4 1079 7246 87 4 1 chr12 64817512 64818493 -56439037 + L1Md_F2 LINE L1 5587 6570 -12 4 1079 381 43 0 0 chr12 64818862 64818909 -56438621 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1079 387 0 0 0 chr12 64818909 64818951 -56438579 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1079 387 0 0 0 chr12 64818951 64818993 -56438537 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1079 1644 171 10 10 chr12 64819928 64820235 -56437295 + Lx2 LINE L1 6689 6995 -2 4 1079 505 319 11 75 chr12 64820482 64820520 -56437010 - Lx6 LINE L1 -510 6540 6503 4 1079 318 50 0 0 chr12 64820520 64820560 -56436970 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 4 1079 1488 305 17 3 chr12 64820560 64820972 -56436558 - Lx6 LINE L1 -724 6736 6291 4 1079 5198 204 56 9 chr12 64820957 64822287 -56435243 - L1_Mur3 LINE L1 -1331 4549 3158 4 1079 417 180 17 75 chr12 64822281 64822401 -56435129 - Lx LINE L1 -6 6648 6536 4 1079 4044 120 48 2 chr12 64822398 64823026 -56434504 - Lx LINE L1 -276 6378 5722 4 1079 5136 209 50 75 chr12 64823015 64823353 -56434177 - L1_Mur3 LINE L1 -2712 3168 2811 4 1079 300 27 0 0 chr12 64823353 64823390 -56434140 + (TTG)n Simple_repeat Simple_repeat 2 38 0 4 1079 5136 209 50 75 chr12 64823390 64824724 -56432806 - L1_Mur3 LINE L1 -3070 2810 1537 4 1079 31481 83 13 19 chr12 64824722 64829835 -56427695 + L1Md_F2 LINE L1 508 5586 -297 4 1079 7978 49 2 2 chr12 64829835 64830819 -56426711 + L1Md_F2 LINE L1 5587 6570 -12 4 1079 1188 234 12 80 chr12 64830847 64831430 -56426100 - L1_Mur3 LINE L1 -4333 1547 1022 4 1079 263 49 0 24 chr12 64831434 64831476 -56426054 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1079 369 345 66 16 chr12 64831557 64831859 -56425671 - L1_Mur3 LINE L1 -7071 657 104 4 1079 303 331 63 16 chr12 64832817 64832943 -56424587 - L1MEg LINE L1 -4745 1339 1208 4 1079 2515 250 23 18 chr12 64833223 64833794 -56423736 - Lx5 LINE L1 -8 7042 6469 4 1079 891 99 0 0 chr12 64834045 64834166 -56423364 - Lx3_Mus LINE L1 -505 6504 6384 4 1079 1078 226 252 3 chr12 64834167 64834500 -56423030 + Lx4B LINE L1 6638 7053 -5 4 1079 210 37 0 0 chr12 64835006 64835033 -56422497 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1079 901 102 55 0 chr12 64835033 64835161 -56422369 - B1_Mus2 SINE Alu -11 136 2 4 1079 378 265 0 0 chr12 64835231 64835397 -56422133 + (TG)n Simple_repeat Simple_repeat 1 166 0 4 1079 492 244 0 0 chr12 64835413 64835577 -56421953 + (TG)n Simple_repeat Simple_repeat 1 164 0 4 1079 257 333 52 67 chr12 64835613 64835748 -56421782 - Lx8 LINE L1 -402 7071 6939 4 1079 395 217 25 55 chr12 64835812 64835926 -56421604 - MTC LTR MaLR -31 390 270 4 1079 235 150 25 0 chr12 64835971 64836011 -56421519 + Lx6 LINE L1 6489 6529 -931 4 1079 907 289 52 34 chr12 64836009 64836450 -56421080 - L1_Mur3 LINE L1 -1352 4528 4080 4 1079 28 0 0 0 chr12 64836544 64836572 -56420958 + AT_rich Low_complexity Low_complexity 1 28 0 4 1079 6486 117 48 12 chr12 64836603 64836677 -56420853 - Lx LINE L1 -4 6650 6585 4 1079 414 0 0 0 chr12 64836677 64836723 -56420807 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1079 6486 122 49 11 chr12 64836723 64837756 -56419774 - Lx LINE L1 -70 6584 5506 4 1079 1052 147 5 5 chr12 64837754 64837939 -56419591 + L1_Mur2 LINE L1 5117 5301 -576 4 1079 297 114 75 9 chr12 64838196 64838302 -56419228 + (TA)n Simple_repeat Simple_repeat 2 114 0 4 1079 372 59 0 0 chr12 64839416 64839467 -56418063 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 1079 345 308 125 83 chr12 64839795 64840170 -56417360 + MLT1C LTR MaLR 60 450 -17 4 1079 348 313 115 25 chr12 64840405 64840605 -56416925 - MER67C LTR ERV1 -291 420 203 4 1079 2746 151 171 96 chr12 64840625 64840894 -56416636 + L1_Mur1 LINE L1 4923 5143 -743 4 1079 996 124 0 0 chr12 64840894 64841039 -56416491 - B1_Mus1 SINE Alu -3 145 1 4 1079 2746 151 171 96 chr12 64841039 64841501 -56416029 + L1_Mur1 LINE L1 5144 5709 -177 4 1079 1044 164 33 0 chr12 64841492 64841675 -56415855 + Lx3B LINE L1 6754 6942 -31 4 1079 3751 136 39 63 chr12 64841671 64842400 -56415130 - Lx3B LINE L1 -492 6481 5773 4 1079 35689 40 4 8 chr12 64842470 64847664 -56409866 + L1Md_A LINE L1 418 5586 -297 4 1079 8220 43 0 0 chr12 64847664 64848654 -56408876 + L1Md_A LINE L1 5587 6576 -6 4 1079 444 19 0 0 chr12 64850221 64850274 -56407256 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1079 1934 134 11 22 chr12 64850317 64850677 -56406853 - L1_Mus3 LINE L1 0 6638 6283 4 1079 690 55 0 0 chr12 64851265 64851356 -56406174 + (GA)n Simple_repeat Simple_repeat 1 91 0 4 1079 183 80 0 0 chr12 64851396 64851421 -56406109 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1079 1088 208 85 134 chr12 64851664 64852413 -56405117 - RLTR19-int LTR ERVK -2105 4032 2627 4 1079 935 285 74 57 chr12 64852704 64853491 -56404039 - MYSERV-int LTR ERVK -285 6265 5538 4 1079 297 191 78 27 chr12 64853714 64853843 -56403687 - MYSERV-int LTR ERVK -1083 5467 5339 4 1079 276 229 16 0 chr12 64853960 64854021 -56403509 - MYSERV-int LTR ERVK -3770 1752 1691 4 1079 534 57 0 0 chr12 64855169 64855239 -56402291 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1079 266 350 20 0 chr12 64855579 64855679 -56401851 - MIR SINE MIR -94 168 67 4 1079 392 324 74 70 chr12 64855775 64856074 -56401456 + MTEa LTR MaLR 80 379 0 4 1079 3623 107 9 11 chr12 64856120 64856161 -56401369 - L1_Mus3 LINE L1 -10 6628 6587 4 1079 5806 70 34 0 chr12 64856161 64856937 -56400593 - L1_Mus1 LINE L1 -1 6566 5765 4 1079 3623 107 9 11 chr12 64856937 64857424 -56400106 - L1_Mus3 LINE L1 -52 6586 6101 4 1079 370 314 88 30 chr12 64857722 64858018 -56399512 + L1M2 LINE L1 4186 4498 -1645 4 1079 477 0 0 0 chr12 64858572 64858625 -56398905 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1079 2790 292 105 26 chr12 64858632 64859808 -56397722 + Lx8 LINE L1 6205 7472 -1 4 1079 344 349 94 13 chr12 64859811 64859925 -56397605 + L1M2 LINE L1 4540 4664 -1479 4 1079 426 20 0 0 chr12 64859925 64859976 -56397554 + (TAA)n Simple_repeat Simple_repeat 2 52 0 4 1079 344 349 94 13 chr12 64859976 64860085 -56397445 + L1M2 LINE L1 4665 4780 -1363 4 1079 255 133 0 0 chr12 64860222 64860267 -56397263 + (CAA)n Simple_repeat Simple_repeat 1 45 0 4 1079 551 81 12 0 chr12 64860289 64860375 -56397155 + (CTAAA)n Simple_repeat Simple_repeat 1 87 0 4 1079 265 167 0 0 chr12 64861289 64861337 -56396193 + Lx3B LINE L1 6925 6972 -1 4 1079 23 33 0 0 chr12 64861367 64861397 -56396133 + AT_rich Low_complexity Low_complexity 1 30 0 4 1079 7024 77 27 2 chr12 64861475 64862566 -56394964 + L1_Mus2 LINE L1 5449 6566 0 4 1079 362 289 23 1 chr12 64863820 64863938 -56393592 - MLT1E1A LTR MaLR 0 680 506 4 1079 9936 91 16 2 chr12 64863943 64865336 -56392194 - Lx3_Mus LINE L1 0 7009 5598 4 1079 271 338 32 32 chr12 64865535 64865666 -56391864 - MLT1E1A LTR MaLR -170 483 326 4 1079 2847 33 0 0 chr12 64865794 64866128 -56391402 - L1Md_F2 LINE L1 -14 6568 6235 4 1079 385 22 0 0 chr12 64866128 64866173 -56391357 - Lx3_Mus LINE L1 -863 6146 6102 4 1079 453 304 51 23 chr12 64866354 64866529 -56391001 - Tigger7 DNA MER2_type -2247 244 65 4 1079 285 29 0 0 chr12 64867468 64867502 -56390028 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1079 755 189 198 5 chr12 64867512 64867709 -56389821 - RMER6C LTR ERVK 0 690 456 4 1079 2684 90 11 0 chr12 64867934 64868301 -56389229 - L1_Mus2 LINE L1 0 6566 6196 5 1079 610 200 14 20 chr12 64868345 64868376 -56389154 - RMER6C LTR ERVK -347 373 343 4 1079 351 0 0 0 chr12 64868376 64868415 -56389115 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1079 653 151 12 114 chr12 64868415 64868591 -56388939 - RMER6C LTR ERVK -378 342 179 4 1079 2212 205 54 43 chr12 64868935 64869495 -56388035 + RMER2 LTR ERV1 2 567 0 5 1079 22 35 0 0 chr12 64869679 64869708 -56387822 + AT_rich Low_complexity Low_complexity 1 29 0 5 1079 619 348 40 15 chr12 64869715 64869989 -56387541 + B4A SINE B4 3 283 -9 5 1079 441 66 0 0 chr12 64870004 64870065 -56387465 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1079 437 28 14 40 chr12 64870065 64870139 -56387391 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1079 1476 243 55 22 chr12 64870425 64870829 -56386701 - MTD LTR MaLR 0 419 3 5 1079 839 335 56 19 chr12 64871052 64871298 -56386232 + MTE-int LTR MaLR 643 900 -680 5 1079 1285 105 11 5 chr12 64871298 64871489 -56386041 + B2_Mm1t SINE B2 2 193 0 5 1079 839 341 197 15 chr12 64871489 64871774 -56385756 + MTE-int LTR MaLR 901 1235 -345 5 1079 333 214 107 0 chr12 64871929 64872032 -56385498 - L1MA8 LINE L1 -357 5934 5821 5 1079 914 267 0 39 chr12 64872062 64872265 -56385265 - B3A SINE B2 -3 195 1 5 1079 189 107 0 0 chr12 64872424 64872452 -56385078 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1079 801 62 0 0 chr12 64872601 64872713 -56384817 + L1_Mus1 LINE L1 6456 6567 0 5 1079 613 283 10 67 chr12 64872744 64872937 -56384593 - B3 SINE B2 -12 204 23 5 1079 230 191 63 9 chr12 64873115 64873226 -56384304 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 1079 495 0 0 0 chr12 64873860 64873915 -56383615 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1079 402 363 59 95 chr12 64873933 64874297 -56383233 - MLT1J-int LTR MaLR -65 1322 975 5 1079 216 0 0 0 chr12 64874297 64874321 -56383209 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1079 402 363 59 95 chr12 64874321 64874400 -56383130 - MLT1J-int LTR MaLR -413 974 896 5 1079 1219 48 0 0 chr12 64874744 64874890 -56382640 + B1_Mm SINE Alu 1 146 -1 5 1079 270 81 0 0 chr12 64874891 64874928 -56382602 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1079 630 162 17 8 chr12 64875600 64875718 -56381812 + PB1D9 SINE Alu 2 120 0 5 1079 1642 114 19 8 chr12 64876053 64876317 -56381213 - L1_Mus4 LINE L1 -1 6635 6369 5 1079 561 112 0 0 chr12 64876317 64876397 -56381133 + L1_Mus4 LINE L1 6139 6218 -418 5 1079 522 0 0 0 chr12 64876549 64876607 -56380923 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 5 1079 1172 200 122 0 chr12 64877527 64877797 -56379733 + Lx5 LINE L1 6745 7047 -3 5 1079 480 319 14 0 chr12 64878057 64878201 -56379329 + Lx6 LINE L1 7157 7302 -158 5 1079 1821 149 14 0 chr12 64878205 64878501 -56379029 - ORR1A2 LTR MaLR -8 319 20 5 1079 375 328 37 0 chr12 64878515 64878649 -56378881 + Lx6 LINE L1 7296 7434 -26 5 1079 202 29 0 54 chr12 64878650 64878687 -56378843 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1079 2670 173 100 82 chr12 64878750 64879348 -56378182 + RMER19C LTR ERVK 3 611 0 5 1079 930 107 0 0 chr12 64879732 64879891 -56377639 + (TC)n Simple_repeat Simple_repeat 1 159 0 5 1079 21 0 0 0 chr12 64880019 64880040 -56377490 + AT_rich Low_complexity Low_complexity 1 21 0 5 1079 22 35 0 0 chr12 64880211 64880240 -56377290 + AT_rich Low_complexity Low_complexity 1 29 0 5 134 833 211 12 93 chr12 64880564 64880810 -56376720 + Lx7 LINE L1 7176 7401 -295 5 1080 1850 168 16 49 chr12 64880831 64881219 -56376311 - Lx2B LINE L1 0 7000 6626 5 1080 1796 243 77 31 chr12 64881222 64881744 -56375786 + Lx5 LINE L1 5804 6349 -701 5 1080 1561 184 86 92 chr12 64882038 64882519 -56375011 - MT2B LTR ERVL 0 475 1 5 1080 926 289 39 4 chr12 64882712 64882993 -56374537 + Lx6 LINE L1 5983 6273 -1187 5 1080 2822 282 74 9 chr12 64882993 64883806 -56373724 + Lx6 LINE L1 6518 7383 -77 5 1080 383 289 30 48 chr12 64884087 64884254 -56373276 + RNLTR23 LTR ERVK 479 642 0 5 1080 235 193 57 57 chr12 64884254 64884342 -56373188 + Lx6 LINE L1 7366 7453 -7 5 1080 278 80 0 20 chr12 64884403 64884454 -56373076 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 1080 212 246 0 0 chr12 64884521 64884586 -56372944 + T-rich Low_complexity Low_complexity 1 65 0 5 1080 2407 7 4 0 chr12 64884594 64884867 -56372663 - L1Md_A LINE L1 -3 6579 6306 5 1080 635 299 143 7 chr12 64884870 64885143 -56372387 - MTE-int LTR MaLR -1181 399 90 5 1080 1173 319 127 36 chr12 64885829 64886414 -56371116 + MTE-int LTR MaLR 818 1455 -125 5 1080 237 360 129 20 chr12 64886588 64886789 -56370741 - RMER15 LTR ERVL 0 575 353 5 1080 1069 67 0 0 chr12 64887236 64887371 -56370159 + B1_Mus2 SINE Alu 3 137 -10 5 1080 268 43 21 21 chr12 64887371 64887418 -56370112 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1080 339 299 77 42 chr12 64888496 64888639 -56368891 + RSINE1 SINE B4 3 150 -15 5 1080 351 0 0 0 chr12 64888642 64888681 -56368849 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1080 2337 114 315 14 chr12 64890274 64890763 -56366767 + L1_Mus3 LINE L1 5997 6632 -6 5 1080 243 0 0 0 chr12 64890951 64890978 -56366552 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1080 1038 82 0 0 chr12 64890981 64891116 -56366414 - B1_Mus1 SINE Alu -13 135 1 5 1080 244 399 61 12 chr12 64891116 64891281 -56366249 + B3 SINE B2 31 203 -13 5 1080 2562 316 50 29 chr12 64891353 64892318 -56365212 - Lx9 LINE L1 -188 7456 6472 5 1080 200 191 43 0 chr12 64892405 64892452 -56365078 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1080 198 396 10 10 chr12 64893835 64893937 -56363593 - MIRm SINE MIR -121 155 54 5 1080 319 301 37 11 chr12 64894247 64894363 -56363167 - MLT2B1 LTR ERVL -58 509 386 5 1080 325 352 156 29 chr12 64894649 64894924 -56362606 - RMER5 LTR ERV1 -16 518 209 5 1080 312 158 0 0 chr12 64895408 64895465 -56362065 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1080 1173 337 48 15 chr12 64895471 64895950 -56361580 + Lx9 LINE L1 6345 6839 -805 5 1080 1101 58 0 0 chr12 64896285 64896423 -56361107 + B1_Mus1 SINE Alu 1 138 -10 5 1080 335 250 82 22 chr12 64896504 64896660 -56360870 + L1MD LINE L1 5325 5489 -802 5 1080 1656 272 40 7 chr12 64896811 64896970 -56360560 - Lx6 LINE L1 -15 7445 7272 5 1080 351 0 0 0 chr12 64896970 64897009 -56360521 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1080 1656 272 40 7 chr12 64897009 64897274 -56360256 - Lx6 LINE L1 -189 7271 7008 5 1080 210 67 0 0 chr12 64897956 64897965 -56359565 + (TTTC)n Simple_repeat Simple_repeat 4 12 0 5 1080 672 13 0 0 chr12 64897965 64898042 -56359488 + (TTCTC)n Simple_repeat Simple_repeat 4 80 0 5 1080 210 67 0 0 chr12 64898042 64898062 -56359468 + (TTTC)n Simple_repeat Simple_repeat 4 23 0 5 1080 28 29 0 0 chr12 64898285 64898320 -56359210 + AT_rich Low_complexity Low_complexity 1 35 0 5 1080 4730 135 40 12 chr12 64898320 64899138 -56358392 - Lx3A LINE L1 -11 6970 6130 5 1080 491 98 11 0 chr12 64899484 64899576 -56357954 + (TATG)n Simple_repeat Simple_repeat 2 94 0 5 1080 799 190 0 6 chr12 64899581 64899732 -56357798 - Lx6 LINE L1 0 7696 7547 5 1080 347 0 23 0 chr12 64899732 64899775 -56357755 + (TATAA)n Simple_repeat Simple_repeat 3 46 0 5 1080 799 190 0 6 chr12 64899775 64899787 -56357743 - Lx6 LINE L1 -150 7546 7535 5 1080 3654 245 86 5 chr12 64899803 64900679 -56356851 - Lx6 LINE L1 -198 7498 6278 5 1080 343 53 35 17 chr12 64901411 64901469 -56356061 + (GAAAA)n Simple_repeat Simple_repeat 2 60 0 5 1080 342 0 0 0 chr12 64901565 64901603 -56355927 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1080 378 0 0 0 chr12 64901634 64901676 -56355854 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1080 551 362 76 37 chr12 64902137 64902599 -56354931 + Lx8 LINE L1 6935 7414 -59 5 1080 197 399 45 8 chr12 64903843 64903977 -56353553 - MIRb SINE MIR -64 204 66 5 1080 382 289 105 72 chr12 64904306 64904459 -56353071 - RSINE1 SINE B4 0 165 8 5 1080 690 47 0 0 chr12 64906102 64906188 -56351342 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 5 1080 665 328 21 0 chr12 64907043 64907235 -56350295 - RMER30 DNA MER1_type -1 201 6 5 1080 249 33 0 0 chr12 64907431 64907461 -56350069 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1080 817 269 17 86 chr12 64907983 64908094 -56349436 - B3 SINE B2 0 216 120 5 1080 1464 195 74 40 chr12 64908094 64908447 -56349083 - ORR1B2 LTR MaLR 0 367 3 5 1080 817 269 17 86 chr12 64908447 64908567 -56348963 - B3 SINE B2 -97 119 1 5 1080 477 0 0 0 chr12 64909065 64909118 -56348412 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1080 305 399 22 78 chr12 64909121 64909352 -56348178 - B4A SINE B4 0 292 75 5 1080 487 290 101 11 chr12 64909960 64910148 -56347382 + B3 SINE B2 2 206 -10 5 1080 335 245 83 21 chr12 64911782 64911878 -56345652 - MTEa LTR MaLR 0 379 278 5 1080 276 286 65 9 chr12 64912104 64912227 -56345303 - MLT1A1 LTR MaLR -216 149 19 5 1080 2277 196 59 99 chr12 64912761 64913475 -56344055 + RMER6C LTR ERVK 6 690 0 5 1080 635 315 10 0 chr12 64913672 64913875 -56343655 - B3 SINE B2 -11 205 1 5 1080 278 330 124 55 chr12 64914130 64914460 -56343070 + Lx9 LINE L1 6984 7336 -308 5 1080 428 216 0 64 chr12 64915572 64915666 -56341864 - B3 SINE B2 0 216 129 5 1080 870 311 110 38 chr12 64915819 64916265 -56341265 - L1_Mur3 LINE L1 -1359 4521 4049 5 1080 507 33 0 0 chr12 64916265 64916326 -56341204 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 5 1080 870 311 110 38 chr12 64916326 64916790 -56340740 - L1_Mur3 LINE L1 -1832 4048 3546 5 1080 318 291 31 0 chr12 64916828 64916955 -56340575 - Lx9 LINE L1 -11 7633 7503 5 1080 268 290 127 42 chr12 64916954 64917213 -56340317 - L1_Mur3 LINE L1 -2348 3535 3250 5 1080 28 48 0 0 chr12 64917252 64917294 -56340236 + AT_rich Low_complexity Low_complexity 1 42 0 5 1080 426 331 146 25 chr12 64917484 64917887 -56339643 - L1M2 LINE L1 -3112 3031 2580 5 1080 960 246 62 21 chr12 64918145 64918436 -56339094 - Lx7 LINE L1 0 7696 7394 5 1080 429 20 0 0 chr12 64918436 64918486 -56339044 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1080 1876 275 40 16 chr12 64918488 64919061 -56338469 - Lx7 LINE L1 -1113 6583 5997 5 1080 20570 151 15 3 chr12 64919812 64921020 -56336510 + L1_Mus3 LINE L1 2258 3480 -2403 5 1080 180 0 0 0 chr12 64921020 64921040 -56336490 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 5 1080 20570 138 25 6 chr12 64921040 64924130 -56333400 + L1_Mus3 LINE L1 3481 6629 -9 5 1080 25 0 0 0 chr12 64924773 64924798 -56332732 + AT_rich Low_complexity Low_complexity 1 25 0 6 1080 991 93 0 0 chr12 64924860 64924999 -56332531 + B1_Mus1 SINE Alu 10 148 0 6 1080 216 0 0 0 chr12 64924999 64925023 -56332507 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1080 320 287 67 38 chr12 64925326 64925536 -56331994 - L1MC LINE L1 -3632 2514 2299 6 1080 2089 326 85 14 chr12 64925868 64926794 -56330736 - Lx8 LINE L1 -142 7331 6340 6 1080 761 185 0 4 chr12 64926799 64927068 -56330462 + CT-rich Low_complexity Low_complexity 1 268 0 6 1080 572 290 125 48 chr12 64927127 64927754 -56329776 - Lx8 LINE L1 -1181 6292 5613 6 1080 1855 127 3 42 chr12 64927785 64928115 -56329415 - Lx LINE L1 -12 6642 6326 6 1080 1026 103 0 0 chr12 64928228 64928374 -56329156 - B1_Mus2 SINE Alu -1 146 1 6 1080 503 262 58 70 chr12 64928374 64928407 -56329123 - B4 SINE B4 -213 79 49 6 1080 546 331 6 48 chr12 64928923 64929091 -56328439 + RSINE1 SINE B4 3 163 -2 6 1080 645 274 14 42 chr12 64930072 64930285 -56327245 + B3 SINE B2 5 211 -5 6 1080 32 0 0 0 chr12 64930373 64930405 -56327125 + AT_rich Low_complexity Low_complexity 1 32 0 6 1080 648 77 27 40 chr12 64930666 64930814 -56326716 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 6 1080 433 227 39 63 chr12 64930834 64930961 -56326569 - B1_Mur1 SINE Alu -4 145 22 6 1080 222 37 0 0 chr12 64930970 64930997 -56326533 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1080 188 186 136 0 chr12 64931527 64931586 -56325944 + L3 LINE CR1 3681 3747 -742 6 1080 1263 343 97 29 chr12 64932088 64933112 -56324418 - Lx8 LINE L1 -258 7215 6123 6 1080 450 0 0 0 chr12 64933659 64933709 -56323821 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1080 495 33 0 0 chr12 64933710 64933771 -56323759 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1080 247 376 128 0 chr12 64933791 64933916 -56323614 - RSINE1 SINE B4 -20 145 5 6 1080 21 71 0 0 chr12 64933960 64934002 -56323528 + AT_rich Low_complexity Low_complexity 1 42 0 6 1080 35 54 0 0 chr12 64934096 64934152 -56323378 + AT_rich Low_complexity Low_complexity 1 56 0 6 1080 4921 34 0 0 chr12 64934856 64935441 -56322089 + L1Md_T LINE L1 5998 6582 0 6 1080 264 273 57 24 chr12 64935563 64935687 -56321843 - Lx7 LINE L1 -382 7314 7187 6 1080 5150 139 7 4 chr12 64935795 64936623 -56320907 - Lx2 LINE L1 -4 6993 6163 6 1080 306 0 0 0 chr12 64936728 64936762 -56320768 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1080 635 59 0 38 chr12 64936887 64936992 -56320538 - L1_Mus3 LINE L1 0 6638 6538 6 1080 534 124 0 0 chr12 64937075 64937164 -56320366 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1080 246 318 25 91 chr12 64937332 64937453 -56320077 - B3A SINE B2 -84 114 2 6 1080 5248 27 0 2 chr12 64937478 64938117 -56319413 - L1Md_T LINE L1 -2259 3624 2987 6 1080 16826 20 0 0 chr12 64938117 64940075 -56317455 + L1Md_T LINE L1 3629 5586 -297 6 1080 7985 57 0 0 chr12 64940075 64941071 -56316459 + L1Md_T LINE L1 5587 6582 0 6 1080 1010 64 0 21 chr12 64941069 64941213 -56316317 + L1_Mus1 LINE L1 6427 6567 0 6 1080 476 71 23 23 chr12 64941525 64941612 -56315918 + L1_Mus3 LINE L1 6480 6566 -72 6 1080 333 0 0 0 chr12 64941617 64941654 -56315876 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1080 22 35 0 0 chr12 64942441 64942470 -56315060 + AT_rich Low_complexity Low_complexity 1 29 0 6 1080 380 349 41 5 chr12 64943083 64943279 -56314251 - B3 SINE B2 -13 203 1 6 1080 2867 302 64 43 chr12 64943482 64944703 -56312827 - Lx7 LINE L1 -274 7422 6176 6 1080 1185 221 54 24 chr12 64944735 64945068 -56312462 + L1_Mur3 LINE L1 4027 4369 -1511 6 1080 6900 103 25 18 chr12 64945215 64946288 -56311242 - Lx3_Mus LINE L1 0 7009 5929 6 1080 206 309 73 21 chr12 64946981 64947077 -56310453 + L2a LINE L2 3326 3426 0 6 1080 1301 271 90 25 chr12 64947671 64948148 -56309382 + Lx5 LINE L1 5889 6396 -654 6 1080 1760 169 88 15 chr12 64948152 64948495 -56309035 - ORR1B1 LTR MaLR -8 386 19 6 1080 746 254 246 8 chr12 64948496 64948854 -56308676 + Lx6 LINE L1 6611 7053 -407 6 1080 583 347 54 39 chr12 64948868 64949126 -56308404 + Lx5 LINE L1 6788 7049 -1 6 1080 534 146 0 0 chr12 64949411 64949507 -56308023 + (CGTG)n Simple_repeat Simple_repeat 1 96 0 6 1080 31 0 0 0 chr12 64950294 64950325 -56307205 + AT_rich Low_complexity Low_complexity 1 31 0 6 1080 398 295 11 67 chr12 64951387 64951666 -56305864 + L1M2 LINE L1 4503 4742 -1138 6 1080 8263 29 4 14 chr12 64951752 64953108 -56304422 - L1Md_T LINE L1 0 6582 5231 6 1080 468 342 57 47 chr12 64953185 64953397 -56304133 + MTD LTR MaLR 61 274 -145 6 1080 3837 191 62 6 chr12 64953445 64954157 -56303373 + RMER13A LTR ERVK 1 752 -108 6 1080 422 264 41 49 chr12 64954187 64954355 -56303175 + MTD LTR MaLR 243 405 -14 6 1080 289 332 58 18 chr12 64954359 64954413 -56303117 + L1M2 LINE L1 4878 4941 -1202 6 1080 360 64 0 0 chr12 64954413 64954460 -56303070 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1080 289 332 58 18 chr12 64954460 64954681 -56302849 + L1M2 LINE L1 4942 5163 -980 6 1080 274 121 121 0 chr12 64954920 64954986 -56302544 + L1MD LINE L1 5359 5432 -927 6 1080 849 243 35 4 chr12 64955040 64955267 -56302263 - Lx9 LINE L1 -728 6916 6683 6 1080 1897 46 0 8 chr12 64955267 64955510 -56302020 + L1Md_F3 LINE L1 6343 6583 -1 6 1080 1051 209 97 30 chr12 64956435 64956766 -56300764 + Lx9 LINE L1 7292 7644 0 6 1080 27 0 0 0 chr12 64956906 64956933 -56300597 + AT_rich Low_complexity Low_complexity 1 27 0 6 1080 26 30 0 0 chr12 64958123 64958156 -56299374 + AT_rich Low_complexity Low_complexity 1 33 0 6 1080 871 226 39 39 chr12 64958184 64958442 -56299088 - RMER17B LTR ERVK -415 543 286 6 1080 403 138 0 0 chr12 64958442 64958507 -56299023 - L1_Mus3 LINE L1 -377 6261 6197 6 1080 445 186 240 0 chr12 64958507 64958636 -56298894 + RLTR26 LTR ERVK 15 174 -468 6 1080 1003 160 19 17 chr12 64958654 64958876 -56298654 + RMER17B LTR ERVK 124 340 -618 6 1080 2560 78 13 19 chr12 64958879 64959256 -56298274 - L1_Mus3 LINE L1 0 6638 6264 6 1080 2653 82 0 0 chr12 64959256 64959610 -56297920 + L1_Mus3 LINE L1 5908 6261 -377 6 1080 1313 258 91 90 chr12 64959610 64960295 -56297235 + RMER17B LTR ERVK 286 842 -116 6 1080 297 0 0 0 chr12 64961045 64961078 -56296452 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 6 1080 709 31 20 20 chr12 64961079 64961179 -56296351 + (GAAA)n Simple_repeat Simple_repeat 4 103 0 6 1080 230 333 109 33 chr12 64962144 64962327 -56295203 - MER3 DNA MER1_type -11 198 2 6 1080 25 0 0 0 chr12 64963012 64963037 -56294493 + AT_rich Low_complexity Low_complexity 1 25 0 6 1080 1020 309 23 23 chr12 64965149 64965497 -56292033 - ORR1E LTR MaLR -11 348 1 6 1080 620 312 57 37 chr12 64965701 64966263 -56291267 + L1MC2 LINE L1 5645 6217 -127 6 1080 1055 229 15 0 chr12 64966712 64966913 -56290617 - B3 SINE B2 -5 211 8 6 1080 424 286 109 0 chr12 64967304 64967423 -56290107 + B3A SINE B2 6 137 -61 6 1080 970 252 116 11 chr12 64967428 64967713 -56289817 + Lx5 LINE L1 6736 7050 0 6 1080 852 104 0 0 chr12 64967726 64967851 -56289679 + (GAAA)n Simple_repeat Simple_repeat 3 127 0 6 1080 609 237 72 0 chr12 64967853 64968005 -56289525 + Lx4B LINE L1 6225 6387 -671 6 1080 2686 259 24 21 chr12 64968012 64968762 -56288768 - Lx7 LINE L1 -1346 6350 5599 6 1080 7372 72 3 7 chr12 64969249 64970697 -56286833 - L1Md_F2 LINE L1 -5 6577 5135 6 1080 5059 88 5 16 chr12 64970694 64971430 -56286100 + L1_Mm LINE L1 4595 5322 -561 6 1080 360 200 0 0 chr12 64971454 64971549 -56285981 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 1080 677 258 56 5 chr12 64971561 64971775 -56285755 - Lx7 LINE L1 -775 5105 4881 6 1080 1089 270 74 38 chr12 64971777 64972197 -56285333 - Lx7 LINE L1 -7016 712 278 6 1080 29 60 0 0 chr12 64972259 64972309 -56285221 + AT_rich Low_complexity Low_complexity 1 50 0 6 1080 23 0 0 0 chr12 64972655 64972678 -56284852 + AT_rich Low_complexity Low_complexity 1 23 0 6 1080 183 42 0 0 chr12 64972744 64972768 -56284762 + (CAA)n Simple_repeat Simple_repeat 2 25 0 6 1080 441 313 101 0 chr12 64972900 64973079 -56284451 - B3A SINE B2 0 198 2 6 1080 1917 74 3 66 chr12 64973486 64973774 -56283756 + L1_Mus2 LINE L1 6297 6566 0 6 1080 1039 90 7 0 chr12 64974078 64974222 -56283308 + B1_Mm SINE Alu 1 145 -2 6 1080 218 116 0 23 chr12 64974223 64974267 -56283263 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1080 539 344 36 49 chr12 64974322 64974382 -56283148 + ORR1D2 LTR MaLR 143 202 -168 6 1080 6500 53 4 1 chr12 64974382 64975196 -56282334 + L1Md_F3 LINE L1 5755 6570 -14 6 1080 539 344 36 49 chr12 64975196 64975358 -56282172 + ORR1D2 LTR MaLR 203 362 -8 6 1080 258 81 0 0 chr12 64975359 64975396 -56282134 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1080 24 32 0 0 chr12 64975886 64975917 -56281613 + AT_rich Low_complexity Low_complexity 1 31 0 6 1080 1454 296 12 12 chr12 64976223 64976630 -56280900 - Lx6 LINE L1 -5 7455 7049 6 1080 246 331 145 22 chr12 64976635 64976814 -56280716 + MER90a LTR ERV1 414 614 0 6 1080 22 35 0 0 chr12 64978153 64978182 -56279348 + AT_rich Low_complexity Low_complexity 1 29 0 6 1080 1121 75 0 0 chr12 64978863 64979010 -56278520 + B1_Mus2 SINE Alu 1 147 0 6 1080 198 0 0 0 chr12 64979850 64979872 -56277658 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1080 509 340 14 7 chr12 64979873 64980015 -56277515 - B3A SINE B2 -54 144 2 6 1080 820 248 20 29 chr12 64980015 64980214 -56277316 - MTD LTR MaLR -211 208 12 6 1080 259 273 75 15 chr12 64980267 64980401 -56277129 + L1M4 LINE L1 3825 3966 -2177 6 1080 260 247 44 40 chr12 64980699 64980964 -56276566 + L1M4 LINE L1 5263 5519 -781 6 1080 371 21 21 0 chr12 64981925 64981973 -56275557 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1080 454 102 18 0 chr12 64982530 64982607 -56274923 + Lx3A LINE L1 3294 3382 -2504 6 1080 2735 124 29 7 chr12 64982607 64983046 -56274484 + Lx3_Mus LINE L1 6540 6988 -21 6 1080 270 0 0 0 chr12 64983046 64983076 -56274454 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 6 1080 3034 101 4 4 chr12 64983081 64983547 -56273983 + Lx3A LINE L1 3721 4186 -1700 6 1080 2440 62 3 9 chr12 64983549 64983875 -56273655 - MTA_Mm LTR MaLR -72 324 1 6 1080 10078 127 44 26 chr12 64983875 64985992 -56271538 + Lx3A LINE L1 4196 6355 -626 6 1080 867 139 0 14 chr12 64985995 64986134 -56271396 - L1_Mus3 LINE L1 -43 6523 6387 7 1080 354 86 0 0 chr12 64986134 64986192 -56271338 + L1_Mus3 LINE L1 6574 6631 -7 7 1080 40 37 0 0 chr12 64986204 64986258 -56271272 + AT_rich Low_complexity Low_complexity 1 54 0 7 1080 279 219 0 24 chr12 64986337 64986380 -56271150 + A-rich Low_complexity Low_complexity 1 43 0 7 1080 3603 133 35 5 chr12 64986380 64987000 -56270530 + Lx3A LINE L1 6342 6980 -1 6 1080 279 219 0 24 chr12 64987000 64987040 -56270490 + A-rich Low_complexity Low_complexity 44 82 0 7 1080 238 397 9 0 chr12 64987388 64987504 -56270026 - MLT1B LTR MaLR -71 319 203 7 1080 234 160 0 0 chr12 64988735 64988785 -56268745 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1080 4339 126 14 22 chr12 64988792 64989520 -56268010 - L1_Mus3 LINE L1 -1 6637 5916 7 1080 303 290 104 22 chr12 64989713 64989847 -56267683 + MTEa LTR MaLR 206 350 -29 7 1080 511 184 0 18 chr12 64989860 64989971 -56267559 + Lx3A LINE L1 6869 6977 -4 7 1080 23 54 0 0 chr12 64990034 64990071 -56267459 + AT_rich Low_complexity Low_complexity 1 37 0 7 1080 454 284 96 7 chr12 64990570 64990705 -56266825 - B1_Mus2 SINE Alu 0 147 1 7 1080 180 0 0 0 chr12 64990761 64990781 -56266749 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1080 3392 223 131 44 chr12 64990811 64991197 -56266333 + RMER19B LTR ERVK 1 411 -326 7 1080 261 0 0 0 chr12 64991197 64991226 -56266304 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1080 3392 206 89 30 chr12 64991226 64991719 -56265811 + RMER19B LTR ERVK 342 877 -25 7 1080 348 393 26 13 chr12 64992155 64992307 -56265223 - MER77 LTR ERVL -453 154 1 7 1080 24 77 0 0 chr12 64993201 64993253 -56264277 + AT_rich Low_complexity Low_complexity 1 52 0 7 1080 27 87 0 0 chr12 64995475 64995544 -56261986 + AT_rich Low_complexity Low_complexity 1 69 0 7 1080 8374 160 40 10 chr12 64996545 64997709 -56259821 - Lx2A1 LINE L1 -1077 5931 4733 7 1080 294 73 0 0 chr12 64997709 64997750 -56259780 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 7 1080 8374 186 48 12 chr12 64997750 64998338 -56259192 - Lx2A1 LINE L1 -1145 4732 4112 7 1080 4245 189 17 16 chr12 64998368 64999235 -56258295 + Lx2B LINE L1 6119 6986 -14 7 1080 2006 146 16 27 chr12 64999525 64999897 -56257633 + RLTR9A LTR ERVK 1 368 0 7 1080 1125 62 7 0 chr12 65000080 65000225 -56257305 + B1_Mus1 SINE Alu 3 148 0 1 1080 1091 89 7 0 chr12 65000580 65000726 -56256804 + B1_Mm SINE Alu 1 147 0 2 1080 223 263 0 0 chr12 65001879 65001936 -56255594 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 3 1080 1469 280 61 88 chr12 65003086 65003697 -56253833 - RMER19C LTR ERVK -17 594 1 4 1080 581 295 0 0 chr12 65003697 65003809 -56253721 - B1_Mur2 SINE Alu -37 112 1 5 1080 236 53 0 26 chr12 65003981 65004020 -56253510 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 1080 709 325 10 0 chr12 65004022 65004228 -56253302 - B3 SINE B2 0 216 9 7 1080 1648 124 0 35 chr12 65005191 65005476 -56252054 + L1Md_F2 LINE L1 6305 6579 -3 8 1080 32 67 0 0 chr12 65005653 65005713 -56251817 + AT_rich Low_complexity Low_complexity 1 60 0 9 1080 26 30 0 0 chr12 65005739 65005772 -56251758 + AT_rich Low_complexity Low_complexity 1 33 0 1 1080 1384 298 112 8 chr12 65006696 65007194 -56250336 + Lx8 LINE L1 6590 7139 -334 1 1080 1691 56 0 0 chr12 65007246 65007460 -56250070 - L1Md_T LINE L1 0 6582 6369 1 1080 1577 37 0 5 chr12 65007467 65007658 -56249872 + B2_Mm1a SINE B2 2 191 -2 1 1080 829 180 0 7 chr12 65008132 65008272 -56249258 + Lx6 LINE L1 6174 6312 -1148 1 1080 450 382 30 20 chr12 65008339 65008542 -56248988 - MER110 LTR ERV1 -2 489 285 1 1080 2666 167 5 5 chr12 65008574 65009020 -56248510 + Lx4A LINE L1 6613 7058 0 1 1080 962 157 79 0 chr12 65009159 65009275 -56248255 - Lx2 LINE L1 0 6997 6882 1 1080 243 0 0 0 chr12 65009275 65009302 -56248228 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 1 1080 962 157 79 0 chr12 65009302 65009363 -56248167 - Lx2 LINE L1 -116 6881 6807 1 1080 27 62 0 0 chr12 65009747 65009795 -56247735 + AT_rich Low_complexity Low_complexity 1 48 0 1 16 37851 15 1 7 chr12 65009888 65015257 -56242273 + L1Md_A LINE L1 254 5586 -297 2 1081 8690 18 0 0 chr12 65015257 65016252 -56241278 + L1Md_A LINE L1 5587 6581 -1 2 1081 1274 206 133 0 chr12 65016328 65016629 -56240901 - L1_Mur1 LINE L1 -5892 1090 750 2 1081 360 205 103 0 chr12 65016646 65016724 -56240806 - MTC LTR MaLR -335 86 1 2 1081 1600 187 28 25 chr12 65018195 65018518 -56239012 + ORR1A4 LTR MaLR 5 328 -1 2 1081 477 0 0 0 chr12 65018744 65018797 -56238733 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1081 797 219 127 9 chr12 65018877 65018916 -56238614 - Lx7 LINE L1 -15 7681 7643 2 1081 1409 196 206 9 chr12 65018916 65019266 -56238264 - MTC LTR MaLR 0 421 3 2 1081 797 219 127 9 chr12 65019266 65019438 -56238092 - Lx7 LINE L1 -54 7642 7445 2 1081 240 86 0 0 chr12 65019495 65019530 -56238000 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1081 1717 242 52 7 chr12 65019623 65020043 -56237487 - Lx7 LINE L1 -454 7242 6804 2 1081 387 302 150 61 chr12 65020179 65020359 -56237171 - B3A SINE B2 0 198 3 2 1081 205 368 84 60 chr12 65020617 65020854 -56236676 - L2c LINE L2 -35 3340 3116 2 1081 1620 259 45 22 chr12 65021499 65021902 -56235628 - MTD LTR MaLR -2 417 6 3 1081 195 42 0 0 chr12 65021968 65021992 -56235538 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1081 1201 78 0 27 chr12 65022002 65022187 -56235343 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1081 2611 90 18 161 chr12 65024376 65024891 -56232639 + MT2_Mm LTR ERVL 1 441 -52 3 1081 614 39 0 0 chr12 65024889 65024966 -56232564 + MTB_Mm LTR MaLR 331 407 0 3 1081 762 111 0 8 chr12 65024966 65025084 -56232446 + MTB_Mm-int LTR MaLR 1 117 -981 3 1081 1101 62 7 0 chr12 65025079 65025223 -56232307 + MT2C_Mm LTR ERVL 331 475 0 3 1081 639 100 18 9 chr12 65026533 65026644 -56230886 + (GAAAA)n Simple_repeat Simple_repeat 5 116 0 3 1081 187 51 24 71 chr12 65026763 65026805 -56230725 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1081 5164 56 17 0 chr12 65026824 65027482 -56230048 - L1Md_F3 LINE L1 -14 6570 5902 3 1081 4305 45 0 0 chr12 65027482 65028041 -56229489 + L1Md_F3 LINE L1 5349 5907 -677 3 1081 280 305 160 68 chr12 65028098 65028674 -56228856 + L1M3 LINE L1 3804 4432 -1711 3 1081 892 95 21 42 chr12 65028675 65028818 -56228712 + L1Md_F2 LINE L1 389 528 -6088 4 1081 26215 81 9 4 chr12 65028797 65032435 -56225095 + L1Md_F2 LINE L1 1931 5586 -297 4 1081 7301 60 9 48 chr12 65032436 65033467 -56224063 + L1Md_F2 LINE L1 5588 6578 -4 4 1081 304 283 33 8 chr12 65033659 65033780 -56223750 + L1M3 LINE L1 4640 4763 -1377 3 1081 2480 335 36 35 chr12 65033813 65035001 -56222529 - Lx8 LINE L1 -30 7443 6254 4 1081 253 247 49 0 chr12 65035279 65035360 -56222170 - L1_Rod LINE L1 -25 5822 5738 4 1081 23 0 0 0 chr12 65035532 65035555 -56221975 + AT_rich Low_complexity Low_complexity 1 23 0 4 1081 3306 122 57 11 chr12 65039038 65039450 -56218080 + Lx LINE L1 6097 6512 -142 4 1081 183 129 0 0 chr12 65039450 65039481 -56218049 + (TGAG)n Simple_repeat Simple_repeat 2 32 0 4 1081 3306 122 57 11 chr12 65039481 65039599 -56217931 + Lx LINE L1 6513 6650 -4 4 1081 21 36 0 0 chr12 65039989 65040017 -56217513 + AT_rich Low_complexity Low_complexity 1 28 0 4 1081 399 320 128 38 chr12 65040082 65040181 -56217349 + MLT1E1A LTR MaLR 32 147 -533 4 1081 2881 93 9 14 chr12 65040181 65040604 -56216926 - BGLII LTR ERVK 0 421 1 4 1081 399 320 128 38 chr12 65040604 65040770 -56216760 + MLT1E1A LTR MaLR 148 321 -359 4 1081 196 323 125 0 chr12 65041104 65041200 -56216330 + MIRm SINE MIR 165 272 -4 4 1081 25 0 0 0 chr12 65041264 65041289 -56216241 + AT_rich Low_complexity Low_complexity 1 25 0 5 1081 22 0 0 0 chr12 65041513 65041535 -56215995 + AT_rich Low_complexity Low_complexity 1 22 0 5 1081 428 368 20 15 chr12 65042552 65042748 -56214782 + B3 SINE B2 19 215 -1 5 1081 23 33 0 0 chr12 65043573 65043603 -56213927 + AT_rich Low_complexity Low_complexity 1 30 0 5 1081 23 0 0 0 chr12 65043691 65043714 -56213816 + AT_rich Low_complexity Low_complexity 1 23 0 5 1081 435 286 26 74 chr12 65044201 65044390 -56213140 - B3A SINE B2 -18 180 1 5 1081 719 222 61 28 chr12 65044422 65044635 -56212895 + Lx7 LINE L1 4226 4445 -1435 5 1081 4260 229 67 16 chr12 65044639 65046300 -56211230 + Lx7 LINE L1 4662 6414 -1282 5 1081 1928 226 38 14 chr12 65046311 65046435 -56211095 + Lx7 LINE L1 6734 6860 -836 5 1081 231 36 0 0 chr12 65046435 65046463 -56211067 + (CAA)n Simple_repeat Simple_repeat 2 29 0 5 1081 1928 226 38 14 chr12 65046463 65046783 -56210747 + Lx7 LINE L1 6861 7189 -507 5 1081 522 0 0 0 chr12 65046873 65046931 -56210599 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 5 1081 28 48 0 0 chr12 65046945 65046987 -56210543 + AT_rich Low_complexity Low_complexity 1 42 0 5 1081 1082 47 0 20 chr12 65047096 65047247 -56210283 - L1Md_F2 LINE L1 -5 6577 6430 6 1081 8392 158 34 8 chr12 65047600 65050073 -56207457 + Lx LINE L1 4103 6648 -6 6 1081 1013 236 14 0 chr12 65050196 65050408 -56207122 + ORR1B1 LTR MaLR 3 217 -177 6 1081 1143 68 0 13 chr12 65050655 65050805 -56206725 - B1_Mus1 SINE Alu 0 148 1 6 1081 23 0 0 0 chr12 65050813 65050836 -56206694 + AT_rich Low_complexity Low_complexity 1 23 0 6 1081 2477 168 18 5 chr12 65050836 65051285 -56206245 - Lx4A LINE L1 -2 7056 6602 6 1081 4416 68 2 8 chr12 65051701 65052291 -56205239 + L1_Mus2 LINE L1 5981 6566 0 6 1081 234 0 0 0 chr12 65052345 65052371 -56205159 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1081 374 152 21 21 chr12 65052416 65052510 -56205020 + GA-rich Low_complexity Low_complexity 2 95 0 6 1081 496 333 19 44 chr12 65052515 65052675 -56204855 - B3A SINE B2 -42 156 1 6 1081 545 281 53 18 chr12 65052908 65053133 -56204397 - L1MA5A LINE L1 -368 5929 5643 7 1081 297 294 20 35 chr12 65053122 65053301 -56204229 - L1MA5A LINE L1 -974 5166 4950 7 1081 2302 94 20 20 chr12 65053316 65053665 -56203865 - L1_Mus3 LINE L1 -7 6631 6283 7 1081 389 177 127 0 chr12 65053665 65053744 -56203786 - Lx4A LINE L1 -447 6611 6523 6 1081 4745 119 21 1 chr12 65057622 65058339 -56199191 - Lx3_Mus LINE L1 -8 7001 6271 7 1081 414 0 0 0 chr12 65058588 65058634 -56198896 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1081 396 59 0 0 chr12 65058637 65058688 -56198842 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1081 883 267 65 30 chr12 65059709 65060047 -56197483 - L1_Mur3 LINE L1 -1934 3946 3590 7 1081 393 22 0 0 chr12 65060047 65060093 -56197437 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 7 1081 883 267 65 30 chr12 65060093 65060125 -56197405 - L1_Mur3 LINE L1 -2291 3589 3563 7 1081 822 48 121 0 chr12 65060195 65060319 -56197211 + B1_Mus1 SINE Alu 10 148 0 7 1081 836 293 114 26 chr12 65060467 65061148 -56196382 - L1_Mur3 LINE L1 -2578 3302 2562 7 1081 246 179 0 0 chr12 65061182 65061238 -56196292 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1081 431 289 32 69 chr12 65061240 65061456 -56196074 - L1_Rod LINE L1 -3274 2573 2366 7 1081 5052 212 40 25 chr12 65061751 65062871 -56194659 - Lx5 LINE L1 -3 7047 5911 8 1081 432 0 0 0 chr12 65063113 65063161 -56194369 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1081 354 325 26 0 chr12 65063932 65064049 -56193481 + B1F SINE Alu 29 148 -1 8 1081 228 296 0 40 chr12 65064124 65064198 -56193332 + B4 SINE B4 2 72 -220 8 1081 420 20 0 0 chr12 65064384 65064433 -56193097 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1081 387 290 120 5 chr12 65064445 65064629 -56192901 + RLTR40 LTR ERVK 566 770 -47 8 1081 301 324 77 7 chr12 65064633 65064776 -56192754 + RMER15 LTR ERVL 355 507 -68 8 1081 903 270 17 139 chr12 65065155 65065368 -56192162 - ORR1E LTR MaLR -4 355 165 8 1081 327 25 0 0 chr12 65065368 65065408 -56192122 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1081 903 270 17 139 chr12 65065408 65065598 -56191932 - ORR1E LTR MaLR -195 164 1 8 1081 494 310 32 32 chr12 65065640 65065890 -56191640 + RMER15-int LTR ERVL 685 934 -4065 8 1081 483 312 74 26 chr12 65065994 65066200 -56191330 - L1MA7 LINE L1 -293 6004 5789 8 1081 519 60 0 0 chr12 65066200 65066267 -56191263 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 1081 483 309 70 24 chr12 65066267 65066414 -56191116 - L1MA7 LINE L1 -503 5788 5632 8 1081 857 340 77 60 chr12 65066437 65067088 -56190442 + RMER15-int LTR ERVL 943 1604 -3395 8 1081 1281 258 52 57 chr12 65069531 65069917 -56187613 - RMER12 LTR ERVK -3 1319 936 9 1081 474 18 0 0 chr12 65069917 65069972 -56187558 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 9 1081 3302 173 73 32 chr12 65070001 65070713 -56186817 - RMER12 LTR ERVK -581 741 1 9 1081 2094 171 86 28 chr12 65070753 65071221 -56186309 - RMER16 LTR ERVK 0 533 1 9 1081 3347 33 5 0 chr12 65073299 65073693 -56183837 - MTA_Mm LTR MaLR 0 396 1 9 1081 186 143 0 0 chr12 65074000 65074035 -56183495 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1081 235 282 38 15 chr12 65074236 65074369 -56183161 + L1M2 LINE L1 4177 4312 -1828 9 1081 268 235 47 0 chr12 65074529 65074614 -56182916 + L1M2 LINE L1 4713 4801 -1342 9 1081 858 168 26 53 chr12 65074612 65074960 -56182570 + L1_Mur2 LINE L1 2831 3004 -2873 9 1081 7761 166 56 6 chr12 65074937 65076508 -56181022 + L1_Mur2 LINE L1 3166 4828 -1312 9 1081 5703 183 33 23 chr12 65076508 65077686 -56179844 + Lx4B LINE L1 5868 7057 -1 9 1081 3149 302 41 24 chr12 65077686 65077930 -56179600 + L1_Mur2 LINE L1 4829 5080 -1060 9 1081 1152 119 0 0 chr12 65077963 65078140 -56179390 + (TCC)n Simple_repeat Simple_repeat 3 179 0 9 1081 243 0 0 0 chr12 65078140 65078167 -56179363 + (TTC)n Simple_repeat Simple_repeat 3 29 0 1 1081 474 33 0 0 chr12 65078176 65078236 -56179294 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1081 540 0 0 0 chr12 65078236 65078295 -56179235 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1081 327 299 20 20 chr12 65078624 65078723 -56178807 + ORR1D1 LTR MaLR 157 255 -119 1 1081 720 270 86 26 chr12 65079180 65079495 -56178035 - ORR1D1 LTR MaLR 0 374 9 1 1081 21 0 0 0 chr12 65079590 65079611 -56177919 + AT_rich Low_complexity Low_complexity 1 21 0 1 1081 215 243 14 41 chr12 65079992 65080065 -56177465 + T-rich Low_complexity Low_complexity 4 74 0 1 1081 1573 155 0 0 chr12 65081235 65081486 -56176044 - Lx2 LINE L1 0 6997 6747 1 1081 400 89 0 0 chr12 65081486 65081542 -56175988 - Lx2 LINE L1 -354 6643 6588 1 1081 821 259 24 10 chr12 65081746 65081953 -56175577 + B3 SINE B2 1 210 -6 1 1081 33 80 0 0 chr12 65082510 65082585 -56174945 + AT_rich Low_complexity Low_complexity 1 75 0 1 1081 3089 275 54 57 chr12 65083835 65085666 -56171864 + Lx5 LINE L1 5162 6975 -75 1 1081 1683 249 163 35 chr12 65085704 65086410 -56171120 + Lx7 LINE L1 6707 7503 -193 1 1081 1241 245 32 50 chr12 65086414 65086757 -56170773 - Lx6 LINE L1 -11 7449 7113 1 1081 4258 74 14 14 chr12 65086757 65087332 -56170198 - L1_Mus1 LINE L1 -61 6506 5932 1 1081 4015 98 2 0 chr12 65087326 65087886 -56169644 + L1_Mus1 LINE L1 5123 5683 -200 1 1081 13770 26 0 0 chr12 65087888 65090188 -56167342 - L1Md_T LINE L1 0 6582 4282 1 1081 1870 59 55 0 chr12 65090186 65090441 -56167089 + L1_Mus1 LINE L1 5671 5939 -628 1 1081 447 252 2 38 chr12 65090438 65090589 -56166941 + Lx7 LINE L1 7559 7687 -9 1 1081 4465 143 33 32 chr12 65090692 65091579 -56165951 - RMER17D LTR ERVK -1 888 1 1 1081 43 64 0 0 chr12 65092891 65092969 -56164561 + AT_rich Low_complexity Low_complexity 1 78 0 1 1081 307 304 27 22 chr12 65093016 65093201 -56164329 + L1_Mur3 LINE L1 2984 3169 -2711 1 1081 1860 34 8 8 chr12 65093737 65093972 -56163558 + L1Md_F2 LINE L1 6330 6564 -18 1 1081 320 91 18 0 chr12 65093973 65093992 -56163538 + (TA)n Simple_repeat Simple_repeat 1 19 0 1 1081 444 82 0 0 chr12 65093992 65094053 -56163477 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1081 320 91 18 0 chr12 65094053 65094088 -56163442 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 1081 22 56 0 0 chr12 65094992 65095028 -56162502 + AT_rich Low_complexity Low_complexity 1 36 0 1 1081 1120 75 0 7 chr12 65095946 65096093 -56161437 + B1_Mus1 SINE Alu 2 147 -1 1 1081 352 0 0 40 chr12 65096094 65096144 -56161386 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 1 1081 824 88 0 0 chr12 65097153 65097266 -56160264 + B1_Mus2 SINE Alu 29 141 -6 1 1081 423 0 0 0 chr12 65097268 65097315 -56160215 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1081 477 34 0 0 chr12 65097906 65097965 -56159565 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1081 399 133 0 54 chr12 65098303 65098414 -56159116 + (TA)n Simple_repeat Simple_repeat 1 105 0 1 1081 22 35 0 0 chr12 65098738 65098767 -56158763 + AT_rich Low_complexity Low_complexity 1 29 0 1 1081 225 266 96 0 chr12 65098934 65099028 -56158502 + L1MC LINE L1 4822 4924 -1222 1 1081 2176 223 105 19 chr12 65099031 65099536 -56157994 + RMER15 LTR ERVL 1 549 -26 1 1081 2837 175 114 8 chr12 65099536 65100158 -56157372 + RMER6C LTR ERVK 3 690 0 1 1081 285 266 120 8 chr12 65100485 65100610 -56156920 + L1MC LINE L1 5170 5308 -838 1 1081 3088 295 67 9 chr12 65100717 65101992 -56155538 + Lx6 LINE L1 5294 7459 -1 1 1081 261 212 0 120 chr12 65102016 65102091 -56155439 + ID_B1 SINE B4 153 218 -6 1 1081 521 70 0 0 chr12 65102024 65102095 -56155435 + B1_Mm SINE Alu 75 145 -2 1 1081 2683 60 0 0 chr12 65102113 65102462 -56155068 + IAPEY2_LTR LTR ERVK 1 349 -8 1 1081 421 245 104 46 chr12 65102485 65102706 -56154824 + Lx6 LINE L1 5814 6053 -1732 1 1081 3481 199 72 4 chr12 65102713 65103390 -56154140 + RMER13A LTR ERVK 1 723 -137 1 1081 4547 123 28 69 chr12 65103650 65104262 -56153268 + Lx3A LINE L1 5172 5787 -99 1 1081 1058 109 7 0 chr12 65104262 65104409 -56153121 + B1_Mus1 SINE Alu 1 148 0 1 1081 4547 119 25 77 chr12 65104409 65105052 -56152478 + Lx3A LINE L1 5785 6389 -592 1 1081 5374 107 5 92 chr12 65105052 65105982 -56151548 + L1_Mus4 LINE L1 5783 6631 -5 1 1081 360 0 0 0 chr12 65106326 65106366 -56151164 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 1081 23 33 0 0 chr12 65106861 65106891 -56150639 + AT_rich Low_complexity Low_complexity 1 30 0 1 1081 931 324 42 35 chr12 65107769 65108164 -56149366 - MTE2a LTR MaLR -14 405 13 1 1081 342 0 0 0 chr12 65108164 65108202 -56149328 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1081 4117 113 6 14 chr12 65108228 65108858 -56148672 - L1_Mus3 LINE L1 -2 6636 6012 1 1081 3996 142 5 3 chr12 65108858 65109514 -56148016 - L1_Mm LINE L1 -568 5315 4659 1 1081 615 286 45 26 chr12 65109518 65109837 -56147693 - RLTR45 LTR ERVK 0 482 112 1 1081 6574 137 1 1 chr12 65109967 65111025 -56146505 - L1_Mm LINE L1 -1228 4655 3598 1 1081 3814 82 20 9 chr12 65111025 65111564 -56145966 + L1Md_F2 LINE L1 6028 6572 -10 1 1081 396 246 65 8 chr12 65111573 65111696 -56145834 - RMER16 LTR ERVK -191 342 213 1 1081 1960 174 29 3 chr12 65111720 65112106 -56145424 - L1_Mur2 LINE L1 -968 4909 4514 1 1081 1664 177 145 2 chr12 65112101 65112514 -56145016 - L1_Mur2 LINE L1 -2166 3711 3240 1 1081 1654 167 3 86 chr12 65112502 65112585 -56144945 - L1VL4 LINE L1 -5468 834 763 1 1081 1560 169 25 0 chr12 65112585 65112864 -56144666 - Lx2A LINE L1 -6 7002 6717 1 1081 1654 167 3 86 chr12 65112864 65113166 -56144364 - L1VL4 LINE L1 -5540 762 481 1 1081 247 286 63 42 chr12 65113399 65113494 -56144036 - L1VL4 LINE L1 -5942 360 264 1 1081 21 57 0 0 chr12 65114034 65114069 -56143461 + AT_rich Low_complexity Low_complexity 1 35 0 1 1081 306 222 39 65 chr12 65114391 65114468 -56143062 - ID4 SINE ID -3 80 6 1 1081 221 0 35 0 chr12 65114777 65114806 -56142724 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1081 409 253 491 39 chr12 65114807 65115037 -56142493 - MTE2b LTR MaLR -14 365 32 1 1081 2154 150 37 0 chr12 65115384 65115764 -56141766 - L1_Mus4 LINE L1 -6 6630 6237 1 1081 825 222 194 6 chr12 65115838 65116178 -56141352 + Lx9 LINE L1 7240 7643 -1 1 1081 237 270 89 62 chr12 65116955 65117101 -56140429 - Lx7 LINE L1 -38 7658 7509 1 1081 1890 255 52 24 chr12 65117127 65117622 -56139908 - Lx7 LINE L1 -280 7416 6908 1 1081 1775 212 49 24 chr12 65120993 65121403 -56136127 + MTC LTR MaLR 2 421 0 1 1081 932 282 37 65 chr12 65121607 65121990 -56135540 - RLTR14 LTR ERV1 -9 373 2 1 1081 327 183 0 0 chr12 65122043 65122125 -56135405 + (TTGG)n Simple_repeat Simple_repeat 2 83 0 1 1081 222 128 0 0 chr12 65122210 65122249 -56135281 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1081 21 0 0 0 chr12 65123591 65123612 -56133918 + AT_rich Low_complexity Low_complexity 1 21 0 1 1081 24 0 0 0 chr12 65123870 65123894 -56133636 + AT_rich Low_complexity Low_complexity 1 24 0 1 1081 638 297 77 43 chr12 65124293 65124620 -56132910 - MTEa LTR MaLR -2 377 40 1 1081 323 325 25 6 chr12 65124707 65124831 -56132699 - PB1D7 SINE Alu -23 126 1 1 1081 23 0 0 0 chr12 65126029 65126052 -56131478 + AT_rich Low_complexity Low_complexity 1 23 0 1 1081 302 248 88 9 chr12 65127349 65127463 -56130067 + L1MA9 LINE L1 5999 6121 -191 1 1081 22 0 0 0 chr12 65127579 65127601 -56129929 + AT_rich Low_complexity Low_complexity 1 22 0 1 1081 3885 289 52 26 chr12 65128654 65130225 -56127305 - Lx7 LINE L1 -664 7032 5424 1 1081 437 165 44 0 chr12 65130221 65130312 -56127218 + L1_Mur3 LINE L1 5335 5429 -451 1 1081 1028 246 18 107 chr12 65130924 65131261 -56126269 - RMER19C LTR ERVK -1 610 304 1 1081 14805 15 0 0 chr12 65131261 65132968 -56124562 + L1_Mm LINE L1 3826 5532 -351 1 1081 353 263 43 208 chr12 65132968 65133022 -56124508 - RMER19C LTR ERVK -593 309 262 1 1081 8728 18 0 0 chr12 65133022 65134018 -56123512 + L1Md_A LINE L1 5587 6582 0 1 1081 977 262 70 54 chr12 65134018 65134269 -56123261 - RMER19C LTR ERVK -291 320 71 1 1081 3776 92 4 0 chr12 65134269 65134793 -56122737 + L1_Mus3 LINE L1 6108 6633 -5 1 1081 977 262 70 54 chr12 65134793 65134856 -56122674 - RMER19C LTR ERVK -541 70 1 1 1081 31 44 0 0 chr12 65135093 65135138 -56122392 + AT_rich Low_complexity Low_complexity 1 45 0 1 1081 295 293 61 0 chr12 65135567 65135649 -56121881 - MTEa LTR MaLR -5 374 288 1 1081 1441 184 92 0 chr12 65135909 65136202 -56121328 + IAPEY3_LTR LTR ERVK 1 320 -12 1 1081 444 303 37 0 chr12 65136708 65136817 -56120713 + B4 SINE B4 107 219 -73 1 1081 1189 89 0 0 chr12 65136836 65136994 -56120536 - B2_Mm2 SINE B2 -35 160 3 1 1081 805 143 41 18 chr12 65136996 65137167 -56120363 + Lx3_Mus LINE L1 6830 7004 -5 1 1081 305 246 0 58 chr12 65137174 65137243 -56120287 + B4 SINE B4 223 287 -5 1 1081 381 22 0 0 chr12 65137276 65137322 -56120208 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1081 1212 256 45 56 chr12 65137869 65138242 -56119288 - MTD LTR MaLR -21 398 1 1 1081 580 206 18 0 chr12 65138273 65138438 -56119092 + GA-rich Low_complexity Low_complexity 4 171 0 1 1081 22 35 0 0 chr12 65138982 65139011 -56118519 + AT_rich Low_complexity Low_complexity 1 29 0 1 1081 723 229 48 5 chr12 65139011 65139200 -56118330 - Lx3C LINE L1 -752 6224 6028 1 1081 4645 158 42 6 chr12 65139198 65140018 -56117512 - Lx3C LINE L1 -306 6670 5822 1 1081 4927 145 36 9 chr12 65140013 65140929 -56116601 - L1_Mur1 LINE L1 -1591 4295 3355 1 1081 553 134 0 35 chr12 65140926 65141042 -56116488 - L1_Mur1 LINE L1 -2720 3166 3055 1 1081 428 242 111 66 chr12 65141064 65141128 -56116402 + RLTR15 LTR ERVK 33 102 -257 1 1081 210 37 0 0 chr12 65141128 65141155 -56116375 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1081 747 109 0 0 chr12 65141155 65141292 -56116238 + (GA)n Simple_repeat Simple_repeat 2 139 0 1 1081 428 242 111 66 chr12 65141292 65141469 -56116061 + RLTR15 LTR ERVK 103 285 -74 1 1081 26 50 0 0 chr12 65141651 65141691 -56115839 + AT_rich Low_complexity Low_complexity 1 40 0 1 1081 666 239 12 12 chr12 65141915 65142084 -56115446 - Lx4B LINE L1 -4 7054 6886 1 1081 297 0 0 0 chr12 65142374 65142407 -56115123 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1081 255 93 0 0 chr12 65142407 65142449 -56115081 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1081 182 98 0 47 chr12 65142450 65142493 -56115037 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 2 135 3875 107 12 16 chr12 65142777 65143346 -56114184 + RMER2 LTR ERV1 1 567 0 2 1082 489 329 19 0 chr12 65143528 65143686 -56113844 - RSINE1 SINE B4 -2 163 3 2 1082 612 258 107 6 chr12 65143896 65144064 -56113466 + ORR1C2 LTR MaLR 98 282 -102 2 1082 246 62 0 0 chr12 65144182 65144214 -56113316 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1082 227 256 42 49 chr12 65144380 65144524 -56113006 - Lx9 LINE L1 -22 7622 7480 2 1082 234 208 25 25 chr12 65144526 65144605 -56112925 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1082 207 0 0 0 chr12 65145036 65145059 -56112471 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2 1082 396 282 38 86 chr12 65145134 65145337 -56112193 - B4A SINE B4 -105 187 1 2 1082 200 100 25 0 chr12 65145508 65145548 -56111982 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 2 1082 315 251 54 112 chr12 65146091 65146315 -56111215 + RMER17C LTR ERVK 80 290 -120 2 1082 3217 184 76 20 chr12 65146538 65147182 -56110348 + RMER19B LTR ERVK 211 890 -12 2 1082 1877 77 0 0 chr12 65147185 65147420 -56110110 - L1_Mus1 LINE L1 -175 5708 5474 2 1082 7114 48 0 0 chr12 65147415 65148274 -56109256 + L1_Mus1 LINE L1 5708 6566 -1 2 1082 22 35 0 0 chr12 65149292 65149321 -56108209 + AT_rich Low_complexity Low_complexity 1 29 0 2 1082 620 230 0 6 chr12 65150296 65150458 -56107072 + CT-rich Low_complexity Low_complexity 4 164 0 2 1082 1759 147 24 27 chr12 65150576 65150870 -56106660 + Lx4A LINE L1 6763 7055 -3 2 1082 22 0 0 0 chr12 65150870 65150892 -56106638 + AT_rich Low_complexity Low_complexity 1 22 0 2 1082 1998 251 17 19 chr12 65151811 65152279 -56105251 - Lx6 LINE L1 -2 7458 6992 2 1082 465 19 0 0 chr12 65152279 65152333 -56105197 + (TTA)n Simple_repeat Simple_repeat 3 56 0 2 1082 2345 151 82 4 chr12 65152333 65152785 -56104745 - Lx3C LINE L1 -14 6962 6476 2 1082 434 303 83 43 chr12 65153354 65153630 -56103900 - Kanga1 DNA Tc2 -9 1736 1450 2 1082 293 311 57 10 chr12 65154291 65154483 -56103047 + L1MC4a LINE L1 6336 6536 -1346 2 1082 29 28 0 0 chr12 65154744 65154780 -56102750 + AT_rich Low_complexity Low_complexity 1 36 0 2 1082 2456 196 121 51 chr12 65154788 65155340 -56102190 - RMER19C LTR ERVK 0 611 23 2 1082 243 0 0 0 chr12 65155340 65155367 -56102163 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1082 2456 196 121 51 chr12 65155367 65155385 -56102145 - RMER19C LTR ERVK -589 22 2 2 1082 415 218 150 38 chr12 65156305 65156513 -56101017 + MTD-int LTR MaLR 964 1104 -154 2 1082 400 339 54 18 chr12 65156552 65156720 -56100810 + MTD LTR MaLR 1 174 -245 2 1082 187 191 14 14 chr12 65156750 65156819 -56100711 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1082 643 261 60 11 chr12 65156929 65157111 -56100419 + MTD LTR MaLR 229 419 0 2 1082 253 162 14 14 chr12 65157696 65157765 -56099765 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1082 988 326 65 24 chr12 65157860 65157958 -56099572 + L1MC1 LINE L1 5419 5534 -799 2 1082 237 65 0 0 chr12 65157958 65157989 -56099541 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1082 988 326 65 24 chr12 65157989 65158525 -56099005 + L1MC1 LINE L1 5535 6078 -255 2 1082 1422 103 5 0 chr12 65159040 65159244 -56098286 - L1_Mus3 LINE L1 -456 6182 5978 2 1082 1946 59 15 7 chr12 65159244 65159515 -56098015 + L1_Mus3 LINE L1 6366 6638 0 2 1082 1544 62 57 0 chr12 65159518 65159727 -56097803 + L1_Mus2 LINE L1 6346 6566 0 2 1082 362 250 0 0 chr12 65160093 65160165 -56097365 - MTE2b LTR MaLR -307 72 1 2 1082 21 0 0 0 chr12 65161225 65161246 -56096284 + AT_rich Low_complexity Low_complexity 1 21 0 2 1082 4046 74 0 23 chr12 65161354 65161919 -56095611 - L1Md_F2 LINE L1 0 6582 6031 2 1082 5941 71 1 0 chr12 65161919 65162696 -56094834 + L1Md_F2 LINE L1 4809 5586 -297 2 1082 7551 63 7 8 chr12 65162696 65163689 -56093841 + L1Md_F2 LINE L1 5587 6578 -4 2 1082 357 282 99 0 chr12 65163692 65163834 -56093696 + L1MA6 LINE L1 4974 5129 -1014 2 1082 1693 275 55 39 chr12 65163847 65164867 -56092663 + L1MA6 LINE L1 5210 6249 -51 2 1082 382 299 19 0 chr12 65165119 65165226 -56092304 - MamRep38 DNA hAT -181 114 6 2 1082 7611 175 39 23 chr12 65165273 65166687 -56090843 - Lx4B LINE L1 -5 7053 5616 2 1082 3267 51 2 0 chr12 65166687 65167082 -56090448 + MTA_Mm LTR MaLR 1 396 0 2 1082 11190 202 129 25 chr12 65167082 65169945 -56087585 - Lx4B LINE L1 -269 5617 2047 2 1082 258 81 0 0 chr12 65169945 65169982 -56087548 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1082 11190 170 42 17 chr12 65169982 65171382 -56086148 - Lx4B LINE L1 -3830 2047 612 2 1082 2898 155 40 38 chr12 65171402 65171984 -56085546 - Lx LINE L1 -2 6652 6070 2 1082 30407 122 40 20 chr12 65172011 65178200 -56079330 - L1_Mus1 LINE L1 0 6567 253 2 1082 563 0 15 0 chr12 65179933 65180000 -56077530 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1082 976 328 25 39 chr12 65180504 65180862 -56076668 + MTE2a LTR MaLR 24 376 -3 2 1082 234 121 0 43 chr12 65180910 65180979 -56076551 + (TTA)n Simple_repeat Simple_repeat 3 68 0 2 1082 764 333 23 13 chr12 65180984 65181298 -56076232 + MTE-int LTR MaLR 62 402 -1178 2 1082 710 232 157 6 chr12 65181315 65181493 -56076037 + B3 SINE B2 10 214 -2 2 1082 237 362 14 84 chr12 65181499 65181641 -56075889 + MTE-int LTR MaLR 561 692 -888 2 1082 9064 138 7 23 chr12 65181678 65183454 -56074076 + Lx2 LINE L1 5237 6997 0 2 1082 330 331 16 32 chr12 65183636 65183761 -56073769 + Lx8 LINE L1 6815 6937 -536 2 1082 227 345 35 0 chr12 65183810 65183926 -56073604 + Lx8 LINE L1 6968 7087 -386 2 1082 550 277 57 67 chr12 65183955 65184164 -56073366 + RMER15 LTR ERVL 359 565 -10 2 1082 291 307 48 19 chr12 65184172 65184275 -56073255 + Lx8 LINE L1 7110 7215 -258 2 1082 294 377 63 49 chr12 65184286 65184573 -56072957 + Lx8 LINE L1 7162 7452 -21 2 1082 550 146 18 0 chr12 65184573 65184683 -56072847 + (TA)n Simple_repeat Simple_repeat 2 113 0 2 1082 34 24 0 0 chr12 65184683 65184724 -56072806 + AT_rich Low_complexity Low_complexity 1 41 0 2 1082 2145 295 32 48 chr12 65186251 65187062 -56070468 + Lx9 LINE L1 6362 7159 -485 2 1082 428 103 0 0 chr12 65187055 65187113 -56070417 - L1_Mur2 LINE L1 -352 5534 5477 2 1082 3734 168 17 67 chr12 65187119 65187931 -56069599 - L1_Mur2 LINE L1 -616 5261 4490 2 1082 4764 169 17 1 chr12 65187934 65188766 -56068764 + Lx LINE L1 5797 6641 -13 2 1082 386 281 87 63 chr12 65188903 65189203 -56068327 + Lx9 LINE L1 7303 7609 -35 2 1082 261 0 0 0 chr12 65189383 65189412 -56068118 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1082 285 156 0 0 chr12 65190031 65190076 -56067454 + 7SK RNA RNA 196 240 -91 2 1082 6617 174 38 9 chr12 65190565 65192422 -56065108 + Lx3C LINE L1 5063 6974 -2 2 1082 205 221 130 14 chr12 65195115 65195184 -56062346 - MIR SINE MIR 0 262 186 2 1082 242 282 74 98 chr12 65195485 65195607 -56061923 + PB1D7 SINE Alu 1 119 -1 2 1082 746 287 87 26 chr12 65195975 65196401 -56061129 + L1MC1 LINE L1 5751 6202 -131 2 1082 306 358 26 33 chr12 65196563 65196716 -56060814 - B4A SINE B4 0 292 141 2 1082 1209 50 0 0 chr12 65196716 65196877 -56060653 + (TC)n Simple_repeat Simple_repeat 2 162 0 2 1082 1963 18 0 0 chr12 65197003 65197227 -56060303 - L1_Mm LINE L1 -817 5066 4843 2 1082 4481 78 5 0 chr12 65197227 65197813 -56059717 + L1Md_T LINE L1 5994 6582 0 2 1082 423 56 0 0 chr12 65197964 65198018 -56059512 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1082 442 325 16 0 chr12 65200525 65200651 -56056879 + RSINE1 SINE B4 3 130 -35 2 1082 243 338 128 26 chr12 65201409 65201643 -56055887 + L4 LINE RTE 320 577 -1452 2 1082 2504 294 45 26 chr12 65202210 65203090 -56054440 - Lx9 LINE L1 -218 7426 6530 2 1082 226 242 45 38 chr12 65203287 65203420 -56054110 + L1_Rod LINE L1 5109 5242 -605 2 1082 222 215 30 30 chr12 65204174 65204241 -56053289 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 2 1082 21 0 0 0 chr12 65204474 65204495 -56053035 + AT_rich Low_complexity Low_complexity 1 21 0 2 1082 3282 127 121 0 chr12 65204715 65205236 -56052294 - MT2B2 LTR ERVL 0 584 1 2 1082 25 31 0 0 chr12 65207058 65207090 -56050440 + AT_rich Low_complexity Low_complexity 1 32 0 2 1082 504 0 0 0 chr12 65207158 65207214 -56050316 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 1082 11697 78 6 24 chr12 65207342 65209684 -56047846 - L1Md_F2 LINE L1 0 6582 4262 2 1082 1555 72 0 0 chr12 65209682 65209890 -56047640 + L1Md_F2 LINE L1 4054 4261 -1622 2 1082 283 254 68 59 chr12 65210041 65210304 -56047226 + L1M4 LINE L1 5174 5435 -1009 2 1082 733 196 111 119 chr12 65210461 65210687 -56046843 + URR1A DNA MER1_type 2 225 -1 2 1082 3111 234 117 10 chr12 65210690 65211487 -56046043 + Lx6 LINE L1 6575 7456 -4 2 1082 236 369 43 35 chr12 65211505 65211620 -56045910 + RSINE1 SINE B4 50 165 0 2 1082 389 259 128 1 chr12 65211649 65211827 -56045703 + L1M2 LINE L1 5478 5674 -638 2 1082 238 347 10 21 chr12 65211872 65211969 -56045561 - PB1D10 SINE Alu -21 96 1 2 1082 290 290 50 16 chr12 65211970 65212179 -56045351 + L1M2 LINE L1 5662 5884 -428 2 1082 25 65 0 0 chr12 65212384 65212430 -56045100 + AT_rich Low_complexity Low_complexity 1 46 0 2 1082 842 292 58 31 chr12 65214710 65214971 -56042559 + B4 SINE B4 25 292 0 2 1082 817 244 100 18 chr12 65218390 65218669 -56038861 - Lx9 LINE L1 -474 7170 6869 2 1082 1138 268 81 22 chr12 65218661 65218872 -56038658 + Lx9 LINE L1 7177 7390 -254 2 1082 1083 195 18 31 chr12 65218872 65219100 -56038430 - URR1B DNA MER1_type 0 225 1 2 1082 1138 268 81 22 chr12 65219100 65219296 -56038234 + Lx9 LINE L1 7391 7608 -36 2 1082 21 0 0 0 chr12 65219302 65219323 -56038207 + AT_rich Low_complexity Low_complexity 1 21 0 2 1082 278 50 25 0 chr12 65219689 65219729 -56037801 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 1082 234 243 28 14 chr12 65220055 65220126 -56037404 + (TATG)n Simple_repeat Simple_repeat 1 72 0 2 1082 3688 223 11 72 chr12 65220126 65221101 -56036429 - Lx9 LINE L1 -83 7561 6646 2 1082 3961 258 52 35 chr12 65221132 65222440 -56035090 + Lx7 LINE L1 6279 7696 0 2 1082 21 0 0 0 chr12 65223106 65223127 -56034403 + AT_rich Low_complexity Low_complexity 1 21 0 2 1082 243 114 0 0 chr12 65223345 65223389 -56034141 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1082 228 67 0 0 chr12 65223397 65223427 -56034103 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1082 1120 56 28 0 chr12 65223940 65224082 -56033448 - B1_Mus2 SINE Alu -1 146 1 2 1082 33 25 0 0 chr12 65224177 65224217 -56033313 + AT_rich Low_complexity Low_complexity 1 40 0 2 1082 604 242 131 30 chr12 65224217 65224545 -56032985 - Lx9 LINE L1 -9 7635 7275 2 1082 460 266 83 30 chr12 65224547 65224679 -56032851 + Lx9 LINE L1 6533 6671 -973 3 1082 1020 265 15 4 chr12 65224713 65224978 -56032552 + Lx9 LINE L1 6740 7007 -637 3 1082 2795 131 28 28 chr12 65224979 65225227 -56032303 + RLTR31B_Mm LTR ERVK 1 245 -312 3 1082 612 40 0 0 chr12 65225227 65225302 -56032228 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1082 432 0 0 0 chr12 65225302 65225349 -56032181 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1082 2795 131 28 28 chr12 65225349 65225570 -56031960 + RLTR31B_Mm LTR ERVK 246 470 -87 3 1082 936 238 25 115 chr12 65225587 65225910 -56031620 + Lx9 LINE L1 6972 7265 -379 3 1082 189 94 0 0 chr12 65226404 65226436 -56031094 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 3 1082 368 330 113 0 chr12 65226722 65226837 -56030693 + RSINE1 SINE B4 2 129 -36 3 1082 207 0 0 0 chr12 65226867 65226890 -56030640 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1082 1105 147 16 5 chr12 65227582 65227610 -56029920 - B2_Mm1t SINE B2 0 193 165 3 1082 585 28 0 0 chr12 65227610 65227681 -56029849 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 3 1082 1105 147 16 5 chr12 65227681 65227843 -56029687 - B2_Mm1t SINE B2 -29 164 2 3 1082 393 213 16 8 chr12 65227939 65228062 -56029468 - Lx9 LINE L1 0 7644 7521 3 1082 1084 247 53 0 chr12 65228068 65228331 -56029199 + Lx9 LINE L1 6657 6933 -711 3 1082 1166 62 0 0 chr12 65228808 65228953 -56028577 + B1_Mus2 SINE Alu 2 146 -1 3 1082 253 329 101 66 chr12 65229195 65229423 -56028107 + ORR1E LTR MaLR 1 236 -123 3 1082 1226 206 34 23 chr12 65229813 65230077 -56027453 - RMER19C LTR ERVK 0 611 345 3 1082 287 344 88 47 chr12 65230132 65230324 -56027206 - L2 LINE L2 -1156 2263 2064 3 1082 468 0 0 0 chr12 65230346 65230398 -56027132 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1082 451 370 0 7 chr12 65230727 65230863 -56026667 + B3A SINE B2 16 150 -48 3 1082 1540 166 127 11 chr12 65231002 65231319 -56026211 - ORR1A2 LTR MaLR -20 350 1 3 1082 22 35 0 0 chr12 65231818 65231847 -56025683 + AT_rich Low_complexity Low_complexity 1 29 0 3 1082 1097 268 41 63 chr12 65232391 65232811 -56024719 - MTE2a LTR MaLR -15 404 1 3 1082 22 56 0 0 chr12 65233250 65233286 -56024244 + AT_rich Low_complexity Low_complexity 1 36 0 3 1082 3668 30 0 7 chr12 65233381 65233819 -56023711 - L1Md_F3 LINE L1 -459 6125 5691 3 1082 3835 36 13 6 chr12 65233819 65234293 -56023237 + L1Md_F3 LINE L1 6107 6583 -1 3 1082 366 23 0 0 chr12 65235029 65235072 -56022458 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 1082 1539 206 47 25 chr12 65235402 65235746 -56021784 + ORR1B1 LTR MaLR 44 393 -1 3 1082 21 36 0 0 chr12 65236735 65236763 -56020767 + AT_rich Low_complexity Low_complexity 1 28 0 3 1082 521 120 0 0 chr12 65237096 65237171 -56020359 + ORR1A1 LTR MaLR 200 274 -72 3 1082 2103 248 5 112 chr12 65237483 65237698 -56019832 + Lx4B LINE L1 6163 6378 -680 3 1082 1959 146 3 23 chr12 65237698 65238042 -56019488 + Lx2 LINE L1 6661 6997 0 3 1082 2103 248 5 112 chr12 65238042 65238476 -56019054 + Lx4B LINE L1 6379 6742 -316 3 1082 286 282 87 0 chr12 65238502 65238605 -56018925 + Lx2B LINE L1 6879 6990 -10 3 1082 2277 217 64 11 chr12 65238914 65239460 -56018070 - RMER15 LTR ERVL 0 575 1 3 1082 913 163 120 20 chr12 65239629 65239829 -56017701 + URR1A DNA MER1_type 7 226 0 3 1082 512 285 127 24 chr12 65239840 65240045 -56017485 + MTEb LTR MaLR 152 377 -2 3 1082 4815 140 59 32 chr12 65241415 65242293 -56015237 - RLTR13D6 LTR ERVK 0 902 1 3 1082 21 57 0 0 chr12 65242809 65242844 -56014686 + AT_rich Low_complexity Low_complexity 1 35 0 3 1082 21 0 0 0 chr12 65242876 65242897 -56014633 + AT_rich Low_complexity Low_complexity 1 21 0 3 1082 287 147 58 10 chr12 65243039 65243142 -56014388 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1082 453 224 52 0 chr12 65243360 65243476 -56014054 - RMER1C Other Other -3 1339 1218 3 1082 868 176 19 6 chr12 65243493 65243653 -56013877 - RMER1C Other Other -169 1173 1012 3 1082 1095 316 14 3 chr12 65244059 65244417 -56013113 - Lx8 LINE L1 -154 7319 6958 3 1082 369 263 55 89 chr12 65244429 65244565 -56012965 + RSINE1 SINE B4 3 133 -32 3 1082 1379 258 75 32 chr12 65244565 65245092 -56012438 + RLTR20C LTR ERVK 1 534 0 3 1082 1384 274 88 32 chr12 65245541 65246066 -56011464 + RLTR12A LTR ERVK 15 568 0 3 1082 255 250 53 95 chr12 65246076 65246266 -56011264 - RLTR12A LTR ERVK -3 565 384 3 1082 243 79 0 0 chr12 65246335 65246373 -56011157 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1082 447 245 139 39 chr12 65246377 65246585 -56010945 - RLTR11B LTR ERVK -224 229 1 3 1082 219 114 0 0 chr12 65246760 65246795 -56010735 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1082 1828 54 16 4 chr12 65247061 65247304 -56010226 - RLTR45 LTR ERVK 0 482 237 3 1082 2909 93 80 0 chr12 65247305 65247745 -56009785 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1082 737 44 11 0 chr12 65247747 65247838 -56009692 - IAPEz-int LTR ERVK -2 6479 6388 3 1082 4410 12 2 0 chr12 65247838 65248330 -56009200 - MT2_Mm LTR ERVL 0 493 1 3 1082 314 0 0 0 chr12 65248330 65248368 -56009162 - MERVL-int LTR ERVL 0 5485 5448 3 1082 392 167 46 35 chr12 65248368 65248455 -56009075 - ORR1A3-int LTR MaLR -1323 640 553 3 1082 40526 15 14 0 chr12 65248455 65253742 -56003788 - MERVL-int LTR ERVL -125 5360 1 3 1082 4410 12 2 0 chr12 65253742 65254234 -56003296 - MT2_Mm LTR ERVL 0 493 1 3 1082 13557 48 5 5 chr12 65254234 65255910 -56001620 - IAPEz-int LTR ERVK -120 6361 4708 3 1082 1884 88 12 0 chr12 65255937 65256188 -56001342 - IAPEz-int LTR ERVK -5183 2497 2244 3 1082 947 67 0 0 chr12 65256183 65256302 -56001228 - IAPEz-int LTR ERVK -5004 1477 1359 3 1082 3741 78 17 14 chr12 65256302 65257112 -56000418 - IAPEz-int LTR ERVK -5819 662 3 3 1082 2967 94 62 2 chr12 65257114 65257562 -55999968 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1082 1457 106 26 17 chr12 65257568 65257798 -55999732 - RLTR45 LTR ERVK -250 232 1 3 1082 7469 126 3 1 chr12 65258093 65259342 -55998188 - Lx LINE L1 -8 6646 5395 3 1082 1807 169 34 11 chr12 65259340 65259692 -55997838 + L1_Mur2 LINE L1 4247 4606 -1271 3 1082 918 148 58 0 chr12 65259689 65259844 -55997686 - L1_Mus2 LINE L1 -229 5654 5491 3 1082 6592 76 18 2 chr12 65259831 65260714 -55996816 + L1_Mus2 LINE L1 5670 6566 0 3 1082 3062 163 6 0 chr12 65260745 65261267 -55996263 + L1_Mm LINE L1 4601 5125 -758 3 1082 1478 6 0 0 chr12 65261908 65262080 -55995450 + L1Md_A LINE L1 6411 6582 0 3 1082 613 302 74 21 chr12 65263467 65263710 -55993820 - Lx6 LINE L1 -185 7275 7020 3 1082 55 56 0 0 chr12 65264051 65264141 -55993389 + AT_rich Low_complexity Low_complexity 1 90 0 3 1082 3566 167 41 28 chr12 65264155 65264896 -55992634 - Lx2B LINE L1 -1055 5945 5181 3 1082 5087 192 23 10 chr12 65264896 65265951 -55991579 + Lx2B LINE L1 5930 6997 -3 3 1082 386 327 23 76 chr12 65266107 65266279 -55991251 - RSINE1 SINE B4 0 165 3 3 1082 27 49 0 0 chr12 65266289 65266330 -55991200 + AT_rich Low_complexity Low_complexity 1 41 0 3 1082 1245 308 63 107 chr12 65266539 65267797 -55989733 - L1_Mur3 LINE L1 -3191 2689 1488 3 1082 24 0 0 0 chr12 65268139 65268163 -55989367 + AT_rich Low_complexity Low_complexity 1 24 0 3 1082 191 333 0 31 chr12 65268757 65268822 -55988708 - L2 LINE L2 -675 2744 2682 3 1082 24 32 0 0 chr12 65268890 65268921 -55988609 + AT_rich Low_complexity Low_complexity 1 31 0 3 1082 333 356 90 13 chr12 65269646 65270025 -55987505 + L1_Mur3 LINE L1 270 677 -7051 3 1082 752 232 130 17 chr12 65270126 65270464 -55987066 + L1_Mur3 LINE L1 859 1221 -6507 3 1082 6379 174 143 61 chr12 65270528 65272215 -55985315 - L1_Mur2 LINE L1 -1638 4239 2414 3 1082 6914 118 14 20 chr12 65272214 65273339 -55984191 + L1_Mus4 LINE L1 5499 6634 -2 3 1082 269 189 0 0 chr12 65273365 65273418 -55984112 - Lx3C LINE L1 -825 6151 6099 3 135 4219 160 92 0 chr12 65273432 65274162 -55983368 + Lx3C LINE L1 6172 6968 -8 3 1083 979 158 36 0 chr12 65274185 65274381 -55983149 + L1_Mur3 LINE L1 2253 2455 -3425 3 1083 779 219 0 41 chr12 65274381 65274552 -55982978 + Lx4A LINE L1 6893 7056 -2 3 1083 12491 193 59 69 chr12 65274573 65275335 -55982195 + L1_Mur3 LINE L1 2459 3190 -2690 3 1083 1104 62 28 0 chr12 65275335 65275479 -55982051 + B1_Mus1 SINE Alu 1 148 0 3 1083 12491 193 59 69 chr12 65275479 65278042 -55979488 + L1_Mur3 LINE L1 3191 5735 -145 3 1083 2110 101 9 29 chr12 65278042 65278357 -55979173 + RLTR27 LTR ERVK 1 309 0 3 1083 6155 198 41 32 chr12 65278357 65278480 -55979050 + L1_Mur3 LINE L1 5736 5875 -5 3 1083 2764 80 61 0 chr12 65278487 65278864 -55978666 - MTB LTR MaLR 0 400 1 3 1083 714 103 8 0 chr12 65278864 65278981 -55978549 - MTB-int LTR MaLR 0 1098 981 3 1083 4702 94 32 4 chr12 65278981 65279771 -55977759 - L1_Mus3 LINE L1 0 6638 5939 3 1083 3864 153 92 18 chr12 65279773 65280533 -55976997 - MTC-int LTR MaLR -152 1106 291 3 1083 1570 279 81 14 chr12 65280598 65281086 -55976444 + Lx6 LINE L1 6491 7333 -127 3 1083 400 323 16 31 chr12 65281634 65281762 -55975768 + RSINE1 SINE B4 2 127 -38 3 1083 218 77 0 71 chr12 65281775 65281817 -55975713 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 3 1083 6274 28 21 0 chr12 65283049 65283803 -55973727 - L1Md_F2 LINE L1 -3 6579 5810 3 1083 219 88 0 0 chr12 65284440 65284474 -55973056 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 3 1083 417 95 0 0 chr12 65284475 65284538 -55972992 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1083 15446 137 25 19 chr12 65284548 65285870 -55971660 - Lx LINE L1 -6 6648 5312 3 1083 2317 67 0 0 chr12 65285870 65286169 -55971361 - L1_Mus1 LINE L1 0 6567 6269 3 1083 15446 165 20 23 chr12 65286169 65288594 -55968936 - Lx LINE L1 -572 5311 2915 3 1083 7018 46 4 1 chr12 65288653 65290068 -55967462 - L1Md_F2 LINE L1 -199 6383 4964 3 1083 9634 102 51 21 chr12 65290053 65291835 -55965695 - L1VL2 LINE L1 -991 2624 785 3 1083 237 179 0 0 chr12 65291844 65291883 -55965647 + MTD LTR MaLR 379 417 -2 3 1083 9485 120 13 2 chr12 65292020 65293466 -55964064 - L1_Mm LINE L1 0 5883 4422 3 1083 3182 129 8 6 chr12 65293449 65293923 -55963607 - L1VL2 LINE L1 -5548 787 313 3 1083 23 0 0 0 chr12 65293973 65293996 -55963534 + AT_rich Low_complexity Low_complexity 1 23 0 3 1083 598 164 47 65 chr12 65293997 65294167 -55963363 - Lx3_Mus LINE L1 0 7009 6843 3 1083 1716 261 45 36 chr12 65294159 65294712 -55962818 + L1_Mur3 LINE L1 587 1144 -6584 3 1083 3258 174 48 16 chr12 65294707 65294809 -55962721 + L1_Mur3 LINE L1 3742 3859 -2021 3 1083 207 0 0 0 chr12 65294809 65294832 -55962698 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1083 3258 174 48 16 chr12 65294832 65295455 -55962075 + L1_Mur3 LINE L1 3860 4489 -1391 3 1083 428 286 130 6 chr12 65295470 65295639 -55961891 + Lx6 LINE L1 7125 7314 -146 3 1083 356 158 0 0 chr12 65295658 65295715 -55961815 - RLTR11B LTR ERVK -396 57 1 3 1083 245 169 167 13 chr12 65295718 65295796 -55961734 + Lx6 LINE L1 7358 7447 -13 3 1083 472 256 133 6 chr12 65296084 65296257 -55961273 - B3A SINE B2 -3 195 1 3 1083 353 324 55 23 chr12 65296397 65296831 -55960699 - L1M2 LINE L1 -385 5498 5074 3 1083 336 233 221 16 chr12 65297057 65297179 -55960351 + Lx3C LINE L1 6826 6972 -4 3 1083 3049 273 187 37 chr12 65297224 65298400 -55959130 + Lx6 LINE L1 6095 7446 -14 3 1083 186 103 0 0 chr12 65298415 65298444 -55959086 + (TGG)n Simple_repeat Simple_repeat 3 31 0 3 1083 756 291 92 10 chr12 65298530 65298741 -55958789 - L1M2 LINE L1 -1223 4920 4689 3 1083 360 0 0 0 chr12 65298741 65298781 -55958749 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1083 756 291 92 10 chr12 65298781 65298958 -55958572 - L1M2 LINE L1 -1455 4688 4500 3 1083 394 317 75 57 chr12 65300364 65300842 -55956688 + L1M3 LINE L1 2376 2862 -3278 4 1083 321 202 2 14 chr12 65300862 65300942 -55956588 + L1M3 LINE L1 4511 4613 -1527 4 1083 267 276 96 7 chr12 65300976 65301122 -55956408 + L1MA9 LINE L1 6154 6312 0 4 1083 1242 80 46 0 chr12 65302369 65302544 -55954986 - L1_Mus1 LINE L1 -1 6566 6384 4 1083 21 0 0 0 chr12 65302554 65302575 -55954955 + AT_rich Low_complexity Low_complexity 1 21 0 4 1083 351 0 0 0 chr12 65302600 65302639 -55954891 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 4 1083 4156 113 51 26 chr12 65302640 65303330 -55954200 - Lx LINE L1 -34 6620 5914 4 1083 501 365 61 4 chr12 65303346 65303577 -55953953 - MLT1E1A LTR MaLR 0 680 437 4 1083 273 317 98 68 chr12 65303582 65303714 -55953816 - MLT1E1A LTR MaLR -354 326 191 4 1083 24 53 0 0 chr12 65303955 65303993 -55953537 + AT_rich Low_complexity Low_complexity 1 38 0 4 1083 387 276 59 20 chr12 65304995 65305250 -55952280 + L1MCa LINE L1 2095 2359 -4149 4 1083 31 0 0 0 chr12 65305330 65305361 -55952169 + AT_rich Low_complexity Low_complexity 1 31 0 4 1083 1648 294 114 12 chr12 65305396 65305876 -55951654 + L1MCa LINE L1 2517 3024 -3297 4 1083 2021 201 18 2 chr12 65305876 65306276 -55951254 - Lx2A1 LINE L1 -1 7007 6602 4 1083 1648 294 114 12 chr12 65306276 65306923 -55950607 + L1MCa LINE L1 3025 3758 -2563 4 1083 38 81 0 0 chr12 65309215 65309302 -55948228 + AT_rich Low_complexity Low_complexity 1 87 0 4 1083 261 187 0 0 chr12 65309429 65309504 -55948026 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1083 1386 244 104 10 chr12 65309578 65309955 -55947575 - MTD LTR MaLR -8 411 3 4 1083 858 286 37 48 chr12 65309957 65310331 -55947199 - Lx9 LINE L1 -278 7366 6997 4 1083 686 316 64 35 chr12 65310503 65310785 -55946745 + RMER15 LTR ERVL 273 562 -13 4 1083 297 89 0 0 chr12 65311169 65311214 -55946316 + (CCA)n Simple_repeat Simple_repeat 2 46 0 4 1083 295 246 226 11 chr12 65311986 65312163 -55945367 + L1M2 LINE L1 5617 5831 -481 4 1083 293 356 67 0 chr12 65312445 65312580 -55944950 + MLT1A1 LTR MaLR 1 144 -264 4 1083 324 0 0 0 chr12 65312974 65313010 -55944520 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1083 186 103 0 0 chr12 65313062 65313091 -55944439 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1083 5395 139 18 90 chr12 65313102 65314172 -55943358 - Lx3C LINE L1 -2 6974 5982 4 1083 531 117 32 0 chr12 65314180 65314205 -55943325 + Lx3B LINE L1 5884 5911 -1062 4 1083 295 42 62 0 chr12 65314205 65314253 -55943277 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1083 531 117 32 0 chr12 65314253 65314321 -55943209 + Lx3B LINE L1 5912 5979 -994 4 1083 3776 57 0 2 chr12 65314389 65314865 -55942665 - L1Md_F2 LINE L1 0 6582 6108 4 1083 4392 26 0 2 chr12 65314865 65315463 -55942067 + L1Md_F2 LINE L1 5499 6095 -487 4 1083 227 257 52 39 chr12 65315583 65315660 -55941870 - L1MA5A LINE L1 -357 5940 5863 4 1083 22 56 0 0 chr12 65315902 65315938 -55941592 + AT_rich Low_complexity Low_complexity 1 36 0 4 1083 380 256 115 72 chr12 65316129 65316268 -55941262 + B4A SINE B4 2 146 -146 4 1083 352 262 136 14 chr12 65316647 65316794 -55940736 - MLT1B LTR MaLR -203 187 23 4 1083 522 320 8 30 chr12 65316804 65316936 -55940594 + RSINE1 SINE B4 30 158 -7 4 1083 486 75 0 0 chr12 65316950 65317017 -55940513 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1083 330 154 39 0 chr12 65317019 65317097 -55940433 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1083 212 327 9 73 chr12 65318171 65318280 -55939250 + ID_B1 SINE B4 77 178 -46 4 1083 238 264 25 33 chr12 65318191 65318300 -55939230 + B1F1 SINE Alu 14 118 -2 4 1083 226 200 16 48 chr12 65318579 65318642 -55938888 - Charlie6 DNA MER1_type -2708 792 732 4 1083 223 85 61 41 chr12 65318642 65318691 -55938839 + A-rich Low_complexity Low_complexity 3 52 0 4 1083 384 328 0 8 chr12 65318693 65318819 -55938711 + RSINE1 SINE B4 28 152 -13 4 1083 1551 209 32 32 chr12 65319206 65319611 -55937919 - Lx9 LINE L1 -1 7643 7239 4 1083 207 0 0 0 chr12 65320208 65320231 -55937299 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1083 849 76 0 0 chr12 65320279 65320397 -55937133 + L1_Mus2 LINE L1 6448 6565 -1 4 1083 270 0 0 0 chr12 65320435 65320465 -55937065 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1083 722 288 60 24 chr12 65320848 65321183 -55936347 - RLTR15 LTR ERVK -9 350 4 4 1083 27 73 0 0 chr12 65321686 65321741 -55935789 + AT_rich Low_complexity Low_complexity 1 55 0 4 1083 390 325 189 27 chr12 65321741 65322297 -55935233 - L1MA7 LINE L1 -27 6264 5619 4 1083 272 202 119 0 chr12 65322373 65322457 -55935073 - L1P5 LINE L1 -677 5479 5386 4 1083 7878 67 1 5 chr12 65322577 65323594 -55933936 - L1Md_F2 LINE L1 -7 6575 5587 4 1083 240 200 0 0 chr12 65323849 65323904 -55933626 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1083 705 45 0 0 chr12 65323924 65324013 -55933517 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 1083 22 0 0 0 chr12 65324160 65324182 -55933348 + AT_rich Low_complexity Low_complexity 1 22 0 4 1083 975 106 0 0 chr12 65324200 65324341 -55933189 - L1_Mus2 LINE L1 -1 6565 6425 4 1083 352 312 70 75 chr12 65324346 65324533 -55932997 - MLT1D LTR MaLR -22 483 298 4 1083 1181 165 0 5 chr12 65324567 65324756 -55932774 + Lx4A LINE L1 6744 6931 -127 4 1083 1011 261 107 38 chr12 65324840 65325186 -55932344 + RLTR14 LTR ERV1 13 382 0 4 1083 570 15 0 0 chr12 65326913 65326980 -55930550 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 1083 387 0 0 0 chr12 65327461 65327504 -55930026 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1083 528 149 0 0 chr12 65327903 65327997 -55929533 + (GA)n Simple_repeat Simple_repeat 1 94 0 4 1083 187 31 62 0 chr12 65328604 65328636 -55928894 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1083 876 20 0 0 chr12 65328762 65328864 -55928666 + (GAA)n Simple_repeat Simple_repeat 2 103 0 4 1083 319 292 41 99 chr12 65328871 65329042 -55928488 + B3A SINE B2 35 195 -3 4 1083 23 97 0 0 chr12 65329158 65329230 -55928300 + AT_rich Low_complexity Low_complexity 1 72 0 4 1083 2640 58 6 0 chr12 65329530 65329876 -55927654 - L1Md_F2 LINE L1 0 6582 6235 4 1083 1139 88 0 0 chr12 65329877 65330024 -55927506 + L1Md_F2 LINE L1 5987 6133 -449 4 1083 388 333 69 77 chr12 65330639 65330899 -55926631 - MER102b DNA MER1_type -83 258 1 4 1083 552 30 0 0 chr12 65331610 65331676 -55925854 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 4 1083 268 118 0 29 chr12 65331995 65332065 -55925465 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 4 1083 457 313 143 29 chr12 65333942 65334215 -55923315 - L2 LINE L2 -676 2743 2440 4 1083 357 24 0 0 chr12 65334727 65334769 -55922761 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 4 1083 248 241 47 81 chr12 65335388 65335474 -55922056 - L2b LINE L2 -1 3374 3292 4 1083 736 316 129 46 chr12 65335729 65336233 -55921297 - MLT1F2 LTR MaLR 0 560 15 4 1083 1262 188 64 15 chr12 65336517 65336782 -55920748 - Lx4B LINE L1 -3 7055 6778 4 1083 2403 73 19 0 chr12 65339268 65339585 -55917945 - L1_Mus1 LINE L1 -2 6565 6243 4 1083 394 326 104 0 chr12 65339607 65339751 -55917779 + B4 SINE B4 124 282 -10 4 1083 187 313 58 51 chr12 65340505 65340629 -55916901 - MIR SINE MIR -113 163 28 4 1083 189 147 0 0 chr12 65340924 65340958 -55916572 + (TTGTG)n Simple_repeat Simple_repeat 2 35 0 4 1083 623 287 75 41 chr12 65341051 65341494 -55916036 + L1M2 LINE L1 2149 2606 -3537 4 1083 456 51 0 0 chr12 65341668 65341727 -55915803 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1083 388 200 159 7 chr12 65341743 65341894 -55915636 + L1_Mur3 LINE L1 3650 3823 -2057 4 1083 4162 39 4 2 chr12 65342335 65342462 -55915068 - L1_Mm LINE L1 -1020 4863 4737 4 1083 2525 42 0 0 chr12 65342462 65342768 -55914762 - L1Md_T LINE L1 -1 6581 6276 4 1083 4162 39 4 2 chr12 65342768 65343155 -55914375 - L1_Mm LINE L1 -1147 4736 4349 4 1083 3258 49 2 2 chr12 65343155 65343563 -55913967 + L1Md_F2 LINE L1 6173 6580 -2 4 1083 216 359 96 7 chr12 65344223 65344369 -55913161 + MIR SINE MIR 6 164 -98 4 1083 270 214 186 0 chr12 65344899 65344969 -55912561 + PB1D10 SINE Alu 35 117 0 4 1083 29 0 0 0 chr12 65345181 65345210 -55912320 + AT_rich Low_complexity Low_complexity 1 29 0 4 1083 849 266 65 9 chr12 65346090 65346413 -55911117 - Lx7 LINE L1 -1456 6240 5900 4 1083 3878 245 47 53 chr12 65346442 65347365 -55910165 + Lx7 LINE L1 6487 7431 -265 4 1083 309 26 0 0 chr12 65347365 65347403 -55910127 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1083 3878 245 47 53 chr12 65347403 65347679 -55909851 + Lx7 LINE L1 7432 7678 -18 4 1083 611 260 13 33 chr12 65348783 65348934 -55908596 - RSINE1 SINE B4 -15 150 3 4 1083 231 347 20 0 chr12 65350320 65350418 -55907112 - MER89 LTR ERV1 -11 548 449 4 1083 505 291 28 7 chr12 65350464 65350606 -55906924 + B1_Mur2 SINE Alu 2 146 -3 4 1083 523 296 114 19 chr12 65350683 65350893 -55906637 + B4A SINE B4 45 274 -18 4 1083 553 318 25 17 chr12 65350928 65351241 -55906289 - MER89 LTR ERV1 -145 414 1 4 1083 216 0 0 0 chr12 65351260 65351284 -55906246 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1083 537 170 0 0 chr12 65351655 65351767 -55905763 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 1083 562 68 23 0 chr12 65351767 65351855 -55905675 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 1083 305 366 128 47 chr12 65352001 65352259 -55905271 + B4 SINE B4 5 283 -9 4 1083 477 0 0 0 chr12 65352264 65352317 -55905213 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1083 228 211 13 38 chr12 65352333 65352412 -55905118 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1083 897 28 0 0 chr12 65352639 65352747 -55904783 + (GA)n Simple_repeat Simple_repeat 1 108 0 4 1083 613 337 59 45 chr12 65353492 65353846 -55903684 + ORR1E LTR MaLR 1 359 0 4 1083 462 36 0 0 chr12 65354060 65354116 -55903414 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1083 226 279 0 42 chr12 65354848 65354919 -55902611 + MLT1A1 LTR MaLR 28 95 -313 4 1083 257 305 12 24 chr12 65355172 65355256 -55902274 + MLT1A1 LTR MaLR 310 392 -16 4 1083 675 301 67 23 chr12 65355434 65355777 -55901753 - L1_Rod LINE L1 -900 4947 4590 4 1083 1049 316 40 31 chr12 65355787 65355931 -55901599 + Lx7 LINE L1 6932 7074 -622 4 1083 940 83 0 0 chr12 65355931 65356063 -55901467 + L1_Mus2 LINE L1 6435 6566 0 5 1083 1049 316 40 31 chr12 65356063 65356081 -55901449 + Lx7 LINE L1 7075 7097 -599 4 1083 234 0 0 0 chr12 65356081 65356107 -55901423 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1083 1049 316 40 31 chr12 65356107 65356390 -55901140 + Lx7 LINE L1 7098 7381 -315 4 1083 352 289 93 29 chr12 65356646 65356791 -55900739 + L1_Rod LINE L1 2021 2172 -3675 5 1083 4233 55 0 0 chr12 65356791 65357304 -55900226 + L1_Mus1 LINE L1 6052 6564 -3 5 1083 352 289 93 29 chr12 65357304 65357436 -55900094 + L1_Rod LINE L1 2173 2315 -3532 5 1083 846 238 11 6 chr12 65357453 65357635 -55899895 - Lx5 LINE L1 -279 6771 6589 5 1083 308 270 0 22 chr12 65357634 65357726 -55899804 + L1_Rod LINE L1 2379 2478 -3369 5 1083 1269 209 34 6 chr12 65357737 65358046 -55899484 + Lx5 LINE L1 6509 6857 -193 5 1083 696 284 45 29 chr12 65358045 65358288 -55899242 + Lx8 LINE L1 6206 6452 -1021 5 1083 434 342 20 20 chr12 65358337 65358489 -55899041 - MT2A LTR ERVL -62 471 320 5 1083 319 295 128 8 chr12 65358615 65358748 -55898782 - MT2A LTR ERVL -380 153 5 5 1083 27 49 0 0 chr12 65359895 65359936 -55897594 + AT_rich Low_complexity Low_complexity 1 41 0 5 1083 273 292 19 45 chr12 65360521 65360710 -55896820 - L1M5 LINE L1 -658 5521 5341 5 1083 4958 208 63 6 chr12 65362044 65363562 -55893968 - Lx4B LINE L1 -107 6951 5331 5 1083 2595 147 139 0 chr12 65363566 65363828 -55893702 - Lx4B LINE L1 -2493 3384 3050 5 1083 686 12 12 0 chr12 65363828 65363911 -55893619 + (TTC)n Simple_repeat Simple_repeat 2 85 0 5 1083 2595 147 139 0 chr12 65363911 65364172 -55893358 - Lx4B LINE L1 -2828 3049 2789 5 1083 2052 221 70 35 chr12 65364178 65364690 -55892840 + RLTR20B3 LTR ERVK 2 531 -46 5 1083 2357 206 99 87 chr12 65364725 65365669 -55891861 - Lx4B LINE L1 -3092 2785 2195 5 1083 1962 302 78 10 chr12 65365764 65365840 -55891690 - Lx8 LINE L1 -147 7326 7238 5 1083 540 0 0 0 chr12 65365840 65365900 -55891630 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1083 1962 302 78 10 chr12 65365900 65366515 -55891015 - Lx8 LINE L1 -236 7237 6588 5 1083 780 297 162 9 chr12 65366543 65366889 -55890641 - Lx8 LINE L1 -954 6519 6121 5 1083 651 93 25 0 chr12 65368450 65368568 -55888962 - L1Md_A LINE L1 0 6582 6462 5 1083 2742 238 74 89 chr12 65368583 65368711 -55888819 - Lx9 LINE L1 -446 7198 7066 5 1083 1069 85 0 0 chr12 65368711 65368852 -55888678 + B1_Mm SINE Alu 1 141 -6 5 1083 2742 238 74 89 chr12 65368852 65369243 -55888287 - Lx9 LINE L1 -579 7065 6697 5 1083 1687 229 70 10 chr12 65369243 65369640 -55887890 - MTC LTR MaLR 0 421 1 5 1083 2742 238 74 89 chr12 65369640 65369710 -55887820 - Lx9 LINE L1 -948 6696 6640 5 1083 1017 212 41 9 chr12 65369710 65369929 -55887601 - URR1A DNA MER1_type 0 226 1 5 1083 1199 128 16 0 chr12 65369935 65370123 -55887407 + B2_Mm1t SINE B2 1 191 -2 5 1083 2742 238 74 89 chr12 65370123 65370438 -55887092 - Lx9 LINE L1 -1005 6639 6299 5 1083 514 282 0 34 chr12 65370542 65370718 -55886812 - Lx9 LINE L1 -1587 6057 5888 5 1083 1268 222 147 17 chr12 65370699 65371121 -55886409 + Lx9 LINE L1 7167 7643 -1 5 1083 581 341 45 9 chr12 65371934 65372156 -55885374 - RMER15 LTR ERVL 0 575 346 5 1083 352 300 91 48 chr12 65372621 65372748 -55884782 + L1M3f LINE L1 796 942 -4386 5 1083 603 40 0 0 chr12 65372748 65372822 -55884708 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 5 1083 352 300 91 48 chr12 65372822 65373069 -55884461 + L1M3f LINE L1 943 1186 -4142 5 1083 667 290 99 21 chr12 65373072 65373456 -55884074 + L1MA6 LINE L1 4886 5299 -844 5 1083 499 257 28 0 chr12 65373518 65373627 -55883903 + RSINE1 SINE B4 35 146 -19 5 1083 733 309 100 34 chr12 65373659 65374221 -55883309 + L1MA6 LINE L1 5628 6226 -74 5 1083 369 0 0 0 chr12 65374403 65374444 -55883086 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1083 221 234 38 38 chr12 65374467 65374547 -55882983 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 5 1083 1391 309 89 40 chr12 65374693 65375098 -55882432 + Lx9 LINE L1 6471 6903 -741 5 1083 609 14 0 0 chr12 65375098 65375168 -55882362 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1083 585 105 0 0 chr12 65375169 65375255 -55882275 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1083 369 0 0 0 chr12 65375255 65375295 -55882235 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1083 3343 31 5 0 chr12 65375295 65375685 -55881845 + MTA_Mm LTR MaLR 4 395 -1 5 1083 1391 309 89 40 chr12 65375685 65375959 -55881571 + Lx9 LINE L1 6904 7186 -458 5 1083 285 313 60 9 chr12 65375959 65376075 -55881455 + Lx9 LINE L1 7138 7259 -385 5 1083 253 340 14 0 chr12 65376797 65376901 -55880629 + PB1D7 SINE Alu 16 120 0 5 1083 251 316 0 37 chr12 65376989 65377071 -55880459 + MER21B LTR ERV1 654 732 -131 5 1083 22 35 0 0 chr12 65377113 65377142 -55880388 + AT_rich Low_complexity Low_complexity 1 29 0 5 1083 21 71 0 0 chr12 65377499 65377541 -55879989 + AT_rich Low_complexity Low_complexity 1 42 0 5 1083 19469 37 8 0 chr12 65378103 65381161 -55876369 - L1Md_F2 LINE L1 -2 6580 3499 5 1083 615 294 255 0 chr12 65381790 65382021 -55875509 + B4A SINE B4 1 290 -2 5 1083 495 73 0 0 chr12 65382043 65382111 -55875419 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1083 351 113 0 0 chr12 65382111 65382163 -55875367 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1083 729 196 134 52 chr12 65383533 65383738 -55873792 - Lx9 LINE L1 -1 7643 7422 5 1083 6532 31 1 0 chr12 65383738 65384510 -55873020 - L1Md_T LINE L1 -2 6580 5808 5 1083 729 196 134 52 chr12 65384510 65384573 -55872957 - Lx9 LINE L1 -223 7421 7353 5 1083 418 313 127 45 chr12 65384623 65384780 -55872750 - B3A SINE B2 -18 180 11 5 1083 627 51 0 0 chr12 65384807 65384886 -55872644 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 1083 864 29 0 0 chr12 65386297 65386400 -55871130 + (TCTCC)n Simple_repeat Simple_repeat 5 107 0 5 1083 8573 134 25 13 chr12 65387194 65389286 -55868244 - Lx3C LINE L1 0 6976 4864 5 1083 256 333 13 0 chr12 65389471 65389549 -55867981 + ID2 SINE ID 1 79 -4 5 1083 354 80 0 0 chr12 65389681 65389731 -55867799 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 5 1083 629 307 3 19 chr12 65389874 65390051 -55867479 - MTE2b LTR MaLR -118 261 82 5 1083 1034 82 0 0 chr12 65390452 65390586 -55866944 + B1_Mm SINE Alu 3 136 -11 5 1083 717 12 0 0 chr12 65390586 65390668 -55866862 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 5 1083 629 273 20 0 chr12 65391318 65391468 -55866062 - MER5A DNA MER1_type 0 189 37 5 1083 33 0 0 0 chr12 65392020 65392053 -55865477 + AT_rich Low_complexity Low_complexity 1 33 0 5 1083 2225 86 16 0 chr12 65392532 65392836 -55864694 + L1_Mus1 LINE L1 6259 6567 0 5 1083 235 272 21 11 chr12 65393923 65394016 -55863514 + L1MDb LINE L1 60 153 -5892 5 1083 722 250 39 15 chr12 65394025 65394228 -55863302 - Tigger7 DNA MER2_type -13 2478 2271 5 1083 325 302 114 26 chr12 65394704 65394932 -55862598 + L1MC LINE L1 3604 3851 -2295 5 1083 4787 231 52 28 chr12 65394957 65396069 -55861461 + L1_Mur3 LINE L1 55 1189 -6539 5 1083 225 0 0 0 chr12 65396069 65396094 -55861436 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1083 4787 178 15 12 chr12 65396094 65396598 -55860932 + L1_Mur3 LINE L1 1190 1699 -4181 5 1083 558 0 0 0 chr12 65396601 65396663 -55860867 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1083 267 169 1 0 chr12 65396663 65396708 -55860822 + Lx7 LINE L1 6891 6948 -748 5 1083 3556 156 3 10 chr12 65396705 65397306 -55860224 - Lx4A LINE L1 -683 6375 5779 5 1083 1038 98 13 25 chr12 65397305 65397462 -55860068 + Lx4A LINE L1 6357 6511 -547 5 1083 225 322 67 42 chr12 65397463 65397549 -55859981 + L1MDb LINE L1 165 254 -6313 5 1083 3120 73 5 0 chr12 65397549 65397947 -55859583 - MTB LTR MaLR 0 400 1 5 1083 225 322 67 42 chr12 65397947 65397980 -55859550 + L1MDb LINE L1 255 287 -6280 5 1083 1043 271 143 21 chr12 65398419 65398886 -55858644 + L1MDb LINE L1 854 1377 -5190 5 1083 586 310 9 57 chr12 65399815 65400027 -55857503 - Lx9 LINE L1 -498 7146 6945 5 135 33215 73 3 16 chr12 65400039 65405205 -55852325 + L1Md_F2 LINE L1 493 5586 -297 5 1084 7956 52 2 1 chr12 65405205 65406188 -55851342 + L1Md_F2 LINE L1 5587 6570 -12 5 1084 436 271 98 23 chr12 65406235 65406409 -55851121 - Lx9 LINE L1 -717 6927 6741 5 1084 290 311 40 24 chr12 65406440 65406565 -55850965 + Lx8 LINE L1 7080 7206 -267 5 1084 468 0 0 0 chr12 65406633 65406685 -55850845 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1084 333 0 0 0 chr12 65406685 65406721 -55850809 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1084 460 362 0 7 chr12 65407519 65407661 -55849869 - RSINE1 SINE B4 -4 161 21 5 1084 21 0 0 0 chr12 65408451 65408472 -55849058 + AT_rich Low_complexity Low_complexity 1 21 0 5 1084 453 291 102 70 chr12 65409148 65409433 -55848097 + MLT1A0 LTR MaLR 6 299 -66 5 1084 482 281 133 51 chr12 65409842 65410156 -55847374 - ORR1E LTR MaLR 0 359 6 5 1084 309 26 0 0 chr12 65410379 65410417 -55847113 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1084 3462 228 69 19 chr12 65410428 65412006 -55845524 - L1_Mur3 LINE L1 -3912 1968 301 5 1084 500 277 13 20 chr12 65412038 65412189 -55845341 - L1_Mur3 LINE L1 -7303 425 276 5 1084 984 89 13 6 chr12 65412784 65412943 -55844587 + (TCTA)n Simple_repeat Simple_repeat 4 163 0 5 1084 368 40 20 0 chr12 65413321 65413371 -55844159 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1084 21 0 0 0 chr12 65413858 65413879 -55843651 + AT_rich Low_complexity Low_complexity 1 21 0 5 1084 346 267 137 16 chr12 65413890 65414080 -55843450 + Charlie5 DNA MER1_type 2244 2456 -168 5 1084 372 290 22 10 chr12 65414090 65414192 -55843338 + RSINE1 SINE B4 5 108 -57 5 1084 34 42 0 0 chr12 65414377 65414425 -55843105 + AT_rich Low_complexity Low_complexity 1 48 0 5 1084 897 313 46 39 chr12 65414545 65414835 -55842695 + MTE2b LTR MaLR 28 319 -60 5 1084 1224 259 127 19 chr12 65414835 65415205 -55842325 - MTD LTR MaLR 0 419 10 5 1084 1079 43 7 0 chr12 65415405 65415545 -55841985 + B1_Mus1 SINE Alu 8 148 0 5 1084 204 48 47 23 chr12 65416775 65416818 -55840712 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1084 255 335 84 36 chr12 65418406 65418573 -55838957 - MLT1A LTR MaLR -16 489 315 5 1084 947 325 92 16 chr12 65418708 65419209 -55838321 - Lx8 LINE L1 -517 6956 6418 5 1084 254 150 0 0 chr12 65419433 65419473 -55838057 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1084 341 93 19 0 chr12 65419474 65419528 -55838002 + (AGGGGG)n Simple_repeat Simple_repeat 1 55 0 5 1084 287 276 58 58 chr12 65419548 65419652 -55837878 - MLT1A LTR MaLR -266 108 5 5 1084 844 276 50 33 chr12 65419862 65420162 -55837368 - Lx8 LINE L1 -293 7180 6876 5 1084 294 149 0 0 chr12 65420269 65420316 -55837214 + RLTR40 LTR ERVK 3 49 -768 5 1084 2825 117 21 7 chr12 65420316 65420746 -55836784 + L1_Mus4 LINE L1 6173 6608 -28 5 1084 1957 196 52 7 chr12 65420763 65421204 -55836326 + RLTR40 LTR ERVK 41 501 -316 5 1084 282 309 51 57 chr12 65421206 65421381 -55836149 - RMER2 LTR ERV1 0 567 394 5 1084 5416 51 0 4 chr12 65421400 65422075 -55835455 - L1Md_F2 LINE L1 -2 6580 5909 5 1084 1013 225 149 4 chr12 65422400 65422668 -55834862 + RLTR40 LTR ERVK 500 806 -11 5 1084 979 242 101 64 chr12 65422737 65423095 -55834435 - ORR1D1 LTR MaLR 0 374 4 5 1084 778 265 10 21 chr12 65423159 65423352 -55834178 + Lx8 LINE L1 6620 6810 -663 5 1084 1515 113 58 15 chr12 65423422 65423683 -55833847 + L1_Mus3 LINE L1 6362 6633 -5 5 1084 219 371 26 53 chr12 65424393 65424544 -55832986 - MIRc SINE MIR -112 156 10 5 1084 230 341 70 27 chr12 65425453 65425640 -55831890 + MIR3 SINE MIR 5 199 -9 6 1084 622 309 41 33 chr12 65426252 65426523 -55831007 - B4A SINE B4 -18 274 2 6 1084 221 0 0 33 chr12 65427337 65427367 -55830163 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1084 494 312 118 84 chr12 65428787 65429119 -55828411 + ORR1E LTR MaLR 9 351 -8 6 1084 569 115 9 19 chr12 65429199 65429305 -55828225 + Lx3A LINE L1 6871 6975 -6 6 1084 267 380 107 23 chr12 65429316 65429615 -55827915 - MamRep605 Unknown Unknown -227 649 326 6 1084 843 10 0 0 chr12 65429658 65429754 -55827776 + (GAA)n Simple_repeat Simple_repeat 1 96 0 6 1084 216 97 0 0 chr12 65429826 65429857 -55827673 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1084 249 214 13 79 chr12 65430239 65430315 -55827215 + MADE2 DNA Mariner 9 79 -1 6 1084 249 326 185 0 chr12 65430695 65430787 -55826743 + PB1D10 SINE Alu 6 114 -3 6 1084 1343 87 5 11 chr12 65430886 65431071 -55826459 + B2_Mm1t SINE B2 1 184 -9 6 1084 435 83 0 0 chr12 65431221 65431281 -55826249 + (TCC)n Simple_repeat Simple_repeat 2 61 0 6 1084 901 311 53 8 chr12 65431937 65432297 -55825233 + MTEa LTR MaLR 1 376 -3 6 1084 1299 276 52 8 chr12 65432614 65432979 -55824551 + RCHARR1 DNA MER1_type 45 425 -549 6 1084 2147 245 50 37 chr12 65432986 65433549 -55823981 - RMER15 LTR ERVL -5 570 1 6 1084 7070 83 3 3 chr12 65433646 65434615 -55822915 + L1Md_F2 LINE L1 4617 5585 -298 6 1084 7486 70 3 10 chr12 65434616 65435605 -55821925 + L1Md_F2 LINE L1 5587 6568 -14 6 1084 23 0 0 0 chr12 65435683 65435706 -55821824 + AT_rich Low_complexity Low_complexity 1 23 0 6 1084 1515 220 35 19 chr12 65435712 65436087 -55821443 + RCHARR1 DNA MER1_type 594 974 0 6 1084 375 330 36 9 chr12 65436946 65436966 -55820564 + ID_B1 SINE B4 84 107 -117 6 1084 429 20 0 0 chr12 65436966 65437016 -55820514 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1084 375 330 36 9 chr12 65437016 65437105 -55820425 + ID_B1 SINE B4 108 196 -28 6 1084 286 331 40 24 chr12 65437105 65437118 -55820412 + B1_Mm SINE Alu 26 126 -21 6 1084 579 244 8 8 chr12 65437290 65437418 -55820112 + Lx9 LINE L1 7060 7187 -457 6 1084 184 194 15 46 chr12 65437424 65437489 -55820041 + GA-rich Low_complexity Low_complexity 5 67 0 6 1084 308 250 140 40 chr12 65437609 65437709 -55819821 - B3A SINE B2 -81 117 8 6 1084 696 12 0 0 chr12 65437883 65437964 -55819566 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1084 498 366 111 24 chr12 65438407 65438740 -55818790 - LTR33 LTR ERVL -150 365 4 6 1084 1848 170 9 6 chr12 65438875 65439195 -55818335 - Lx4A LINE L1 -2 7056 6736 6 1084 23 0 0 0 chr12 65439569 65439592 -55817938 + AT_rich Low_complexity Low_complexity 1 23 0 6 1084 215 98 73 0 chr12 65440289 65440330 -55817200 + A-rich Low_complexity Low_complexity 2 45 0 6 1084 326 319 50 33 chr12 65441616 65441736 -55815794 + ID_B1 SINE B4 93 214 -10 6 1084 570 41 0 0 chr12 65441763 65441836 -55815694 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 1084 22 0 0 0 chr12 65441904 65441926 -55815604 + AT_rich Low_complexity Low_complexity 1 22 0 6 1084 389 281 47 0 chr12 65441976 65442147 -55815383 + L1MD LINE L1 2111 2289 -3857 6 1084 29 28 0 0 chr12 65443348 65443384 -55814146 + AT_rich Low_complexity Low_complexity 1 36 0 6 1084 336 24 0 0 chr12 65443639 65443680 -55813850 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1084 1588 125 12 0 chr12 65444167 65444415 -55813115 + Lx3_Mus LINE L1 6759 7009 0 6 1084 23 68 0 0 chr12 65444415 65444459 -55813071 + AT_rich Low_complexity Low_complexity 1 44 0 6 1084 273 143 21 42 chr12 65445613 65445708 -55811822 + (TCTCTG)n Simple_repeat Simple_repeat 4 96 0 6 1084 21 57 0 0 chr12 65445729 65445764 -55811766 + AT_rich Low_complexity Low_complexity 1 35 0 6 1084 274 236 0 11 chr12 65446528 65446618 -55810912 - Lx4A LINE L1 -1 7057 6969 6 1084 3049 78 2 0 chr12 65446638 65447035 -55810495 + MTB LTR MaLR 3 400 0 6 1084 6772 111 16 13 chr12 65447060 65448483 -55809047 - Lx LINE L1 -2 6652 5227 6 1084 296 267 87 29 chr12 65448616 65448720 -55808810 - MLT1A1 LTR MaLR -9 399 290 6 1084 190 352 46 62 chr12 65449075 65449205 -55808325 + MIRc SINE MIR 24 151 -117 6 1084 300 292 78 14 chr12 65449818 65450054 -55807476 + L1ME2z LINE L1 5323 5580 -864 6 1084 541 328 44 29 chr12 65450067 65450271 -55807259 + ID_B1 SINE B4 10 216 -8 6 1084 296 274 136 30 chr12 65450362 65450693 -55806837 + L1ME2z LINE L1 5673 6038 -406 6 1084 449 236 62 25 chr12 65450726 65450887 -55806643 + L1ME2z LINE L1 6113 6279 -165 6 1084 363 23 0 0 chr12 65450934 65450978 -55806552 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1084 29 28 0 0 chr12 65451734 65451770 -55805760 + AT_rich Low_complexity Low_complexity 1 36 0 6 1084 23 68 0 0 chr12 65453366 65453410 -55804120 + AT_rich Low_complexity Low_complexity 1 44 0 6 1084 575 27 14 0 chr12 65453516 65453589 -55803941 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 1084 464 299 14 0 chr12 65454161 65454308 -55803222 + B1F2 SINE Alu 1 149 0 6 1084 662 188 11 17 chr12 65454472 65454529 -55803001 + polypurine Low_complexity Low_complexity 3 59 0 6 1084 936 91 0 0 chr12 65454529 65454661 -55802869 + (GAA)n Simple_repeat Simple_repeat 3 134 0 6 1084 662 188 11 17 chr12 65454661 65454782 -55802748 + polypurine Low_complexity Low_complexity 60 179 0 6 1084 726 252 98 45 chr12 65455375 65455599 -55801931 - MTE2a LTR MaLR -1 378 143 6 1084 251 258 0 20 chr12 65455716 65455786 -55801744 + T-rich Low_complexity Low_complexity 30 98 0 6 1084 1116 63 35 0 chr12 65455786 65455929 -55801601 - B1_Mus1 SINE Alu 0 148 1 6 1084 251 258 0 20 chr12 65455929 65455957 -55801573 + T-rich Low_complexity Low_complexity 3 29 0 6 1084 300 250 43 0 chr12 65455972 65456064 -55801466 - MTD-int LTR MaLR -1161 97 2 6 1084 1854 242 10 17 chr12 65456069 65456481 -55801049 - MTD LTR MaLR -8 411 3 6 1084 730 292 59 31 chr12 65456553 65456929 -55800601 - L1M2 LINE L1 -4137 2712 2321 6 1084 1223 55 0 0 chr12 65456929 65457075 -55800455 - B1_Mus1 SINE Alu -1 147 2 6 1084 730 292 59 31 chr12 65457075 65457122 -55800408 - L1M2 LINE L1 -4529 2320 2277 6 1084 277 211 61 9 chr12 65457416 65457531 -55799999 - L1M2 LINE L1 -4918 1931 1811 6 1084 232 216 0 0 chr12 65457532 65457583 -55799947 + L1_Mur3 LINE L1 5830 5880 0 6 1084 438 20 0 0 chr12 65458320 65458371 -55799159 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1084 1617 260 85 111 chr12 65458519 65459566 -55797964 + RMER17B LTR ERVK 1 908 0 6 1084 527 204 12 68 chr12 65459870 65460033 -55797497 - Lx4B LINE L1 -4 7054 6901 6 1084 303 28 0 0 chr12 65460141 65460177 -55797353 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1084 5968 29 1 0 chr12 65460177 65460905 -55796625 - L1Md_F2 LINE L1 -28 6554 5826 6 1084 213 207 0 33 chr12 65461146 65461206 -55796324 + T-rich Low_complexity Low_complexity 1 58 0 6 1084 338 324 21 41 chr12 65461347 65461492 -55796038 + MIR SINE MIR 82 223 -39 6 1084 939 181 80 10 chr12 65462411 65462612 -55794918 - ORR1D2 LTR MaLR 0 370 156 6 1084 3247 221 37 70 chr12 65462631 65463533 -55793997 - Lx5 LINE L1 0 7050 6179 6 1084 498 269 17 8 chr12 65463533 65463664 -55793866 - ORR1D2 LTR MaLR -221 149 28 6 1084 721 315 25 20 chr12 65464080 65464281 -55793249 - B3 SINE B2 -1 215 14 6 1084 416 350 28 0 chr12 65466087 65466230 -55791300 - RSINE1 SINE B4 -16 149 3 6 1084 1216 362 57 21 chr12 65468621 65469238 -55788292 - L4 LINE RTE -319 1710 1072 6 1084 503 302 16 43 chr12 65469601 65469788 -55787742 + B3A SINE B2 1 182 -16 6 1084 288 70 0 0 chr12 65469789 65469832 -55787698 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1084 768 52 0 0 chr12 65470797 65470894 -55786636 + (TG)n Simple_repeat Simple_repeat 2 98 0 6 1084 21 0 0 0 chr12 65471029 65471050 -55786480 + AT_rich Low_complexity Low_complexity 1 21 0 6 1084 586 120 0 0 chr12 65471224 65471324 -55786206 + L1_Mm LINE L1 1902 2001 -3882 6 1084 653 329 18 14 chr12 65471324 65471546 -55785984 + MTE2b LTR MaLR 152 374 -5 6 1084 615 139 0 0 chr12 65471630 65471731 -55785799 + (TA)n Simple_repeat Simple_repeat 1 101 0 6 1084 441 145 0 0 chr12 65472046 65472122 -55785408 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 1084 2126 244 42 43 chr12 65472236 65473042 -55784488 + L1_Rod LINE L1 455 1412 -4435 6 1084 798 290 61 70 chr12 65473066 65473481 -55784049 + RLTR11A2 LTR ERVK 7 418 -27 6 1084 779 260 9 61 chr12 65473513 65473726 -55783804 + URR1B DNA MER1_type 24 225 0 6 1084 2774 200 42 32 chr12 65473727 65474528 -55783002 + L1_Rod LINE L1 1404 2212 -3635 6 1084 2474 231 69 54 chr12 65474521 65475337 -55782193 + Lx7 LINE L1 6862 7689 -7 6 1084 3986 204 91 31 chr12 65475364 65476265 -55781265 - Lx5 LINE L1 -4 7046 6117 6 1084 204 40 0 0 chr12 65476265 65476290 -55781240 + (CG)n Simple_repeat Simple_repeat 1 25 0 6 1084 216 0 0 0 chr12 65476290 65476313 -55781217 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1084 3986 204 91 31 chr12 65476313 65476420 -55781110 - Lx5 LINE L1 -934 6116 5977 6 1084 5638 63 1 0 chr12 65476429 65477178 -55780352 - L1_Mm LINE L1 -227 5656 4907 6 1084 19121 160 30 3 chr12 65477165 65480962 -55776568 - Lx3C LINE L1 -967 6009 2113 6 1084 588 93 46 0 chr12 65480948 65481056 -55776474 - MusHAL1 LINE L1 -1975 737 625 6 1084 3827 186 63 29 chr12 65481056 65481747 -55775783 - RMER19B LTR ERVK -6 896 186 6 1084 7315 83 25 6 chr12 65481747 65482751 -55774779 + RLTR13D5 LTR ERVK 1 1023 0 6 1084 3827 186 63 29 chr12 65482751 65482851 -55774679 - RMER19B LTR ERVK -717 185 78 6 1084 3007 149 7 5 chr12 65482854 65483408 -55774122 + L1_Mur2 LINE L1 3931 4485 -1392 6 1084 2903 167 15 108 chr12 65483408 65484011 -55773519 + RMER19B LTR ERVK 1 547 -355 6 1084 651 262 39 56 chr12 65484011 65484545 -55772985 + L1_Rod LINE L1 3314 3834 -2309 6 1084 264 137 0 0 chr12 65485086 65485137 -55772393 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1084 28 48 0 0 chr12 65485137 65485179 -55772351 + AT_rich Low_complexity Low_complexity 1 42 0 6 1084 1775 178 44 5 chr12 65485270 65485655 -55771875 - L1_Mur3 LINE L1 -1324 4556 4157 6 1084 371 256 276 41 chr12 65488509 65488687 -55768843 - B4A SINE B4 -66 226 7 6 1084 229 247 44 11 chr12 65489030 65489120 -55768410 - Lx7 LINE L1 -1 7695 7603 7 1084 387 0 0 0 chr12 65489270 65489313 -55768217 + (TAAAA)n Simple_repeat Simple_repeat 5 47 0 7 1084 957 289 38 9 chr12 65489321 65489666 -55767864 - Lx7 LINE L1 -395 7301 6947 7 1084 670 192 96 0 chr12 65489810 65489966 -55767564 + ORR1D1 LTR MaLR 204 374 0 7 1084 493 263 101 48 chr12 65490000 65490188 -55767342 + Lx8 LINE L1 7234 7431 -42 7 1084 608 0 14 0 chr12 65490610 65490682 -55766848 + (TTTTC)n Simple_repeat Simple_repeat 4 76 0 7 1084 1322 125 5 14 chr12 65490687 65490906 -55766624 - Lx2 LINE L1 -6 6991 6775 7 1084 6587 114 13 31 chr12 65490904 65491125 -55766405 - Lx2 LINE L1 -352 6645 6445 7 1084 3594 144 138 81 chr12 65491125 65491979 -55765551 - RMER17A2 LTR ERVK -3 903 1 7 1084 6587 123 15 22 chr12 65491979 65493234 -55764296 - Lx2 LINE L1 -553 6444 5176 7 1084 736 185 7 0 chr12 65493250 65493396 -55764134 + L1_Mur2 LINE L1 4862 5008 -869 7 1084 339 25 0 0 chr12 65493951 65493991 -55763539 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1084 2932 21 2 175 chr12 65494594 65495063 -55762467 - RLTR10 LTR ERVK -2 388 1 7 1084 15139 30 22 29 chr12 65495065 65497063 -55760467 - RLTR10-int LTR ERVK -3 1984 1 7 1084 2741 16 2 176 chr12 65497067 65497532 -55759998 - RLTR10 LTR ERVK -6 384 1 7 1084 3093 61 8 8 chr12 65497549 65497945 -55759585 + MTA_Mm LTR MaLR 1 396 0 7 1084 361 271 249 37 chr12 65498587 65498900 -55758630 - MLT1A0 LTR MaLR 0 365 1 7 1084 1162 82 0 0 chr12 65500496 65500643 -55756887 + B1_Mm SINE Alu 1 147 0 1 1084 946 69 35 23 chr12 65501135 65501444 -55756086 + (GA)n Simple_repeat Simple_repeat 1 312 0 2 1084 839 112 41 0 chr12 65501448 65501618 -55755912 + GA-rich Low_complexity Low_complexity 1 177 0 3 1084 1868 171 62 36 chr12 65504422 65504780 -55752750 - ORR1B2 LTR MaLR 0 367 1 4 1084 185 277 81 46 chr12 65505585 65505672 -55751858 - MIRb SINE MIR -119 149 60 5 1084 1151 196 4 18 chr12 65505726 65505954 -55751576 + URR1B DNA MER1_type 1 225 0 6 1084 959 210 65 0 chr12 65507003 65507203 -55750327 + B3 SINE B2 1 213 -3 7 1084 24 77 0 0 chr12 65507203 65507255 -55750275 + AT_rich Low_complexity Low_complexity 1 52 0 8 1084 297 128 0 0 chr12 65507405 65507452 -55750078 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 9 1084 382 333 19 19 chr12 65508011 65508170 -55749360 - LTR41B LTR ERVL -597 161 3 1 1084 459 48 0 0 chr12 65508346 65508408 -55749122 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1084 237 269 73 15 chr12 65509349 65509417 -55748113 - MT2B LTR ERVL -523 78 7 1 1084 2835 169 168 8 chr12 65510861 65511446 -55746084 + RLTR33 LTR ERVK 1 678 0 1 1084 21 0 0 0 chr12 65512532 65512553 -55744977 + AT_rich Low_complexity Low_complexity 1 21 0 1 1084 807 152 38 31 chr12 65513564 65513852 -55743678 + (TAGA)n Simple_repeat Simple_repeat 1 289 0 1 1084 207 0 0 0 chr12 65513855 65513878 -55743652 + (CATA)n Simple_repeat Simple_repeat 2 24 0 1 1084 32 43 0 0 chr12 65514150 65514196 -55743334 + AT_rich Low_complexity Low_complexity 1 46 0 1 1084 272 233 85 43 chr12 65514561 65514655 -55742875 + MLT1A0 LTR MaLR 262 359 -6 1 1084 1013 283 54 54 chr12 65514911 65515155 -55742375 + L1_Rod LINE L1 5000 5254 -593 1 1084 1071 108 0 0 chr12 65515155 65515313 -55742217 - L1_Mus2 LINE L1 -1 6565 6408 2 1084 1013 283 54 54 chr12 65515313 65515603 -55741927 + L1_Rod LINE L1 5255 5533 -314 1 1084 540 45 0 0 chr12 65515669 65515736 -55741794 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 2 1084 17115 114 8 46 chr12 65515738 65516065 -55741465 + L1_Mus1 LINE L1 3146 3483 -2400 2 1084 459 0 0 0 chr12 65516065 65516116 -55741414 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1084 17115 114 8 46 chr12 65516116 65517911 -55739619 + L1_Mus1 LINE L1 3484 5199 -684 2 1084 2999 72 5 7 chr12 65517911 65518315 -55739215 - L1Md_F2 LINE L1 -12 6570 6168 2 1084 17115 84 6 26 chr12 65518315 65519733 -55737797 + L1_Mus1 LINE L1 5200 6567 0 2 1084 10233 58 6 1 chr12 65519967 65521272 -55736258 - L1Md_F2 LINE L1 -292 5591 4280 2 1084 8165 45 1 0 chr12 65521281 65522276 -55735254 + L1Md_F2 LINE L1 5587 6582 0 2 1084 291 213 31 47 chr12 65522310 65522438 -55735092 + Lx9 LINE L1 7477 7602 -42 2 1084 243 215 0 0 chr12 65522575 65522640 -55734890 + GA-rich Low_complexity Low_complexity 1 65 0 2 1084 180 111 0 0 chr12 65523031 65523058 -55734472 + L2c LINE L2 3353 3379 -8 2 1084 415 0 18 18 chr12 65523747 65523803 -55733727 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2 1084 261 0 0 0 chr12 65524834 65524863 -55732667 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1084 546 314 27 23 chr12 65524905 65525166 -55732364 + Lx6 LINE L1 7138 7399 -61 3 1084 205 104 84 56 chr12 65525245 65525316 -55732214 + (CAAA)n Simple_repeat Simple_repeat 2 74 0 3 1084 258 222 78 16 chr12 65525552 65525616 -55731914 - ID4_ SINE ID -15 68 1 3 1084 263 315 0 0 chr12 65525625 65525698 -55731832 - B1F SINE Alu -8 141 69 3 1084 1204 87 23 0 chr12 65525734 65526077 -55731453 + (TTTC)n Simple_repeat Simple_repeat 1 350 0 3 1084 242 231 21 32 chr12 65526077 65526090 -55731440 + T-rich Low_complexity Low_complexity 85 97 0 3 1084 1221 106 0 0 chr12 65526090 65526270 -55731260 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1084 242 231 21 32 chr12 65526270 65526350 -55731180 + T-rich Low_complexity Low_complexity 5 84 0 3 1084 185 94 31 0 chr12 65526368 65526400 -55731130 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1084 24 0 0 0 chr12 65526636 65526660 -55730870 + AT_rich Low_complexity Low_complexity 1 24 0 4 1084 306 217 0 0 chr12 65526687 65526756 -55730774 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 4 1084 623 294 19 8 chr12 65526758 65526964 -55730566 - B3A SINE B2 -4 212 2 4 1084 33268 108 19 24 chr12 65526995 65527654 -55729876 - L1Md_T LINE L1 0 6582 5926 4 1084 278 136 0 0 chr12 65527654 65527698 -55729832 - B1_Mus2 SINE Alu 0 147 104 4 1084 33268 108 19 24 chr12 65527698 65533420 -55724110 - L1Md_T LINE L1 0 5925 217 4 1084 231 209 0 0 chr12 65534057 65534100 -55723430 + (TAG)n Simple_repeat Simple_repeat 2 44 0 4 1084 1178 35 0 0 chr12 65534411 65534552 -55722978 - B1_Mus2 SINE Alu -5 142 2 4 1084 263 242 169 0 chr12 65534552 65534676 -55722854 + L1MA4A LINE L1 5796 5940 -360 4 1084 21 0 0 0 chr12 65534694 65534715 -55722815 + AT_rich Low_complexity Low_complexity 1 21 0 4 1084 250 291 0 55 chr12 65534910 65535001 -55722529 + L1MA4 LINE L1 5511 5596 -704 4 135 3721 37 5 0 chr12 65535995 65536429 -55721101 - RLTR10C LTR ERVK 0 436 1 5 1085 851 294 99 24 chr12 65537392 65537726 -55719804 + MLT2C1 LTR ERVL 1 359 -38 5 1085 771 260 10 14 chr12 65537726 65537955 -55719575 + L1MA4 LINE L1 5695 5930 -249 4 1085 354 23 0 0 chr12 65537955 65537998 -55719532 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1085 394 309 52 48 chr12 65537998 65538040 -55719490 + L1MA4 LINE L1 5931 5967 -212 4 1085 321 68 0 0 chr12 65538259 65538303 -55719227 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 5 1085 408 20 0 0 chr12 65538666 65538715 -55718815 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1085 183 295 60 60 chr12 65538954 65539037 -55718493 + MIR SINE MIR 154 236 -26 5 1085 321 26 0 0 chr12 65539144 65539182 -55718348 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 5 1085 229 214 0 0 chr12 65539231 65539273 -55718257 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 5 1085 492 258 15 46 chr12 65539293 65539423 -55718107 + B4 SINE B4 28 153 -139 5 1085 238 182 30 0 chr12 65539487 65539553 -55717977 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1085 789 261 99 8 chr12 65539939 65540182 -55717348 - MER67D LTR ERV1 -249 265 1 6 1085 226 364 146 40 chr12 65540862 65541368 -55716162 + L2 LINE L2 2408 2967 -452 6 1085 1446 282 91 37 chr12 65542402 65542973 -55714557 - MTC-int LTR MaLR -694 1269 176 6 1085 987 231 10 85 chr12 65543392 65543519 -55714011 + Lx9 LINE L1 6738 6846 -798 6 1085 369 0 0 0 chr12 65543519 65543560 -55713970 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 6 1085 987 231 10 85 chr12 65543560 65543725 -55713805 + Lx9 LINE L1 6847 7008 -636 6 1085 1611 161 17 75 chr12 65543731 65544079 -55713451 + ORR1A4 LTR MaLR 1 328 -1 6 1085 311 208 38 0 chr12 65544103 65544209 -55713321 + Lx9 LINE L1 7528 7637 -7 6 1085 246 284 13 13 chr12 65545511 65545586 -55711944 - ID4 SINE ID -8 75 1 6 1085 699 44 0 0 chr12 65545719 65545810 -55711720 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 1085 5381 68 15 3 chr12 65545887 65546606 -55710924 + L1_Mus1 LINE L1 5840 6567 0 6 1085 505 298 5 105 chr12 65546621 65546812 -55710718 + B3A SINE B2 27 198 0 6 1085 219 248 8 25 chr12 65547470 65547487 -55710043 + T-rich Low_complexity Low_complexity 106 122 0 7 1085 1086 102 0 0 chr12 65547487 65547634 -55709896 - B1_Mus2 SINE Alu 0 147 1 7 1085 241 198 24 24 chr12 65547634 65547737 -55709793 + (TTATA)n Simple_repeat Simple_repeat 1 103 0 7 1085 226 192 40 40 chr12 65547870 65547883 -55709647 + A-rich Low_complexity Low_complexity 4 14 0 7 1085 7811 55 4 6 chr12 65547883 65548941 -55708589 + L1Md_F2 LINE L1 5587 6582 0 7 1085 857 153 235 0 chr12 65549296 65549479 -55708051 - URR1A DNA MER1_type 0 226 1 7 1085 202 91 45 0 chr12 65549750 65549765 -55707765 + (TA)n Simple_repeat Simple_repeat 1 15 0 7 1085 495 0 0 0 chr12 65549765 65549820 -55707710 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1085 202 91 45 0 chr12 65549820 65549848 -55707682 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 1085 572 40 13 0 chr12 65550557 65550632 -55706898 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1085 423 87 0 0 chr12 65551431 65551500 -55706030 + (CAATA)n Simple_repeat Simple_repeat 2 70 0 8 1085 1098 337 118 6 chr12 65552117 65552616 -55704914 - LTR80A LTR ERVL -3 580 26 8 1085 852 48 46 38 chr12 65552616 65552775 -55704755 + L1_Mus1 LINE L1 6430 6567 0 8 1085 1053 262 73 53 chr12 65552821 65553232 -55704298 - MTD LTR MaLR 0 419 1 8 1085 338 241 0 48 chr12 65553441 65553524 -55704006 - ID4 SINE ID -3 80 2 8 1085 392 338 25 25 chr12 65554602 65554763 -55702767 - MLT2C1 LTR ERVL -105 292 132 8 1085 219 227 157 57 chr12 65554856 65554926 -55702604 + ID4_ SINE ID 4 80 -3 8 1085 303 282 62 18 chr12 65554952 65555064 -55702466 - MLT2C1 LTR ERVL -280 117 1 8 1085 359 357 130 33 chr12 65555338 65555798 -55701732 - L2 LINE L2 -1078 2341 1837 8 1085 216 0 0 0 chr12 65555833 65555857 -55701673 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1085 524 227 0 66 chr12 65555865 65556016 -55701514 + RMER10B LTR ERVL 194 334 -64 8 1085 402 21 0 0 chr12 65556020 65556067 -55701463 + (TA)n Simple_repeat Simple_repeat 1 47 0 9 1085 461 399 40 4 chr12 65556382 65556656 -55700874 + L1MDb LINE L1 3 286 -6123 9 1085 1900 244 83 97 chr12 65556910 65557427 -55700103 + RCHARR1 DNA MER1_type 70 577 -397 9 1085 828 100 0 0 chr12 65557427 65557547 -55699983 + (GAAA)n Simple_repeat Simple_repeat 1 120 0 9 1085 1900 244 83 97 chr12 65557547 65557796 -55699734 + RCHARR1 DNA MER1_type 578 826 -148 9 1085 277 292 19 32 chr12 65557905 65558056 -55699474 + L1MA4 LINE L1 5779 5918 -382 9 1085 192 231 0 0 chr12 65558067 65558119 -55699411 + (TATG)n Simple_repeat Simple_repeat 2 53 0 9 1085 4616 84 84 9 chr12 65558466 65559135 -55698395 - L1_Mus3 LINE L1 -3 6635 5917 9 1085 1832 123 0 0 chr12 65559135 65559412 -55698118 - L1_Mm LINE L1 -306 5577 5301 9 1085 447 68 0 0 chr12 65559816 65559875 -55697655 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 9 1085 1178 98 5 11 chr12 65559875 65560061 -55697469 - Lx3A LINE L1 -13 6968 6784 9 1085 20712 24 2 2 chr12 65560151 65562729 -55694801 + L1Md_T LINE L1 3009 5587 -296 1 1085 8417 34 0 0 chr12 65562730 65563723 -55693807 + L1Md_T LINE L1 5589 6581 -1 1 1085 592 226 41 46 chr12 65564364 65564582 -55692948 + L1M2 LINE L1 5388 5604 -696 1 1085 548 281 0 0 chr12 65564601 65564715 -55692815 + B1_Mur2 SINE Alu 36 149 0 1 1085 380 275 92 41 chr12 65564715 65564971 -55692559 + Lx7 LINE L1 5592 5831 -1177 1 1085 3503 18 2 0 chr12 65564973 65565368 -55692162 + MTA_Mm LTR MaLR 1 396 0 1 1085 8890 42 6 1 chr12 65565368 65566461 -55691069 + MTA_Mm-int LTR MaLR 1 1098 0 1 1085 3503 18 2 0 chr12 65566461 65566856 -55690674 + MTA_Mm LTR MaLR 1 396 0 1 1085 207 0 0 0 chr12 65566904 65566927 -55690603 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 1 1085 271 314 57 7 chr12 65567074 65567215 -55690315 - Lx8 LINE L1 -366 7107 6960 1 1085 280 250 79 24 chr12 65567795 65567959 -55689571 + L1MA5 LINE L1 6126 6298 -2 1 1085 5506 38 3 0 chr12 65568007 65568664 -55688866 - L1Md_T LINE L1 0 6582 5924 1 1085 486 275 105 17 chr12 65568718 65568899 -55688631 + B3A SINE B2 1 197 -1 1 1085 391 329 55 29 chr12 65568902 65569209 -55688321 + L1M5 LINE L1 3829 4143 -2003 1 1085 1291 88 5 42 chr12 65569232 65569446 -55688084 + Lx LINE L1 6449 6654 0 1 1085 4739 228 69 5 chr12 65569454 65570665 -55686865 - Lx9 LINE L1 -13 7631 6343 1 1085 2753 103 2 34 chr12 65570789 65571229 -55686301 + IAPEY3-int LTR ERVK 7222 7647 -33 1 1085 482 65 0 0 chr12 65571226 65571288 -55686242 + MMERVK10C-int LTR ERVK 7509 7570 -11 1 1085 396 0 0 0 chr12 65571288 65571332 -55686198 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1085 1192 222 64 21 chr12 65571420 65571833 -55685697 - Lx9 LINE L1 -1682 5962 5501 1 1085 870 168 0 0 chr12 65571984 65572145 -55685385 + (TA)n Simple_repeat Simple_repeat 2 162 0 1 1085 198 0 0 0 chr12 65572145 65572167 -55685363 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 1085 24 32 0 0 chr12 65576402 65576433 -55681097 + AT_rich Low_complexity Low_complexity 1 31 0 1 1085 477 0 0 0 chr12 65576532 65576585 -55680945 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1 1085 239 196 0 82 chr12 65576909 65576970 -55680560 + MLT1B LTR MaLR 265 320 -70 1 1085 247 213 109 75 chr12 65577012 65577159 -55680371 + L1MA5 LINE L1 6148 6299 -1 1 1085 2531 241 43 3 chr12 65577353 65577960 -55679570 - Lx6 LINE L1 -15 7445 6815 1 1085 5717 127 56 16 chr12 65577998 65578960 -55678570 - Lx3B LINE L1 -1 6972 5972 1 1085 291 177 48 16 chr12 65578976 65579039 -55678491 + Lx3B LINE L1 5003 5067 -819 1 1085 2980 131 17 8 chr12 65579043 65579648 -55677882 + Lx3B LINE L1 5366 5970 -1003 1 1085 245 346 28 56 chr12 65579875 65579982 -55677548 + MT2B LTR ERVL 172 275 -326 1 1085 441 0 0 0 chr12 65579995 65580044 -55677486 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1085 17682 101 13 14 chr12 65580097 65583625 -55673905 + L1_Mus2 LINE L1 3044 6566 0 1 1085 485 337 73 55 chr12 65584008 65584357 -55673173 - MLT1E1A LTR MaLR -9 671 264 1 1085 357 281 125 59 chr12 65584390 65584526 -55673004 - MLT1E1A LTR MaLR -508 145 1 1 1085 616 200 8 8 chr12 65584740 65584861 -55672669 + Lx8 LINE L1 7209 7329 -144 1 1085 230 143 54 0 chr12 65585335 65585391 -55672139 + Lx8 LINE L1 7414 7472 -1 1 1085 252 0 0 0 chr12 65585436 65585464 -55672066 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1 1085 203 325 74 33 chr12 65585464 65585585 -55671945 - L2 LINE L2 -1008 2411 2286 1 1085 2867 56 8 18 chr12 65586305 65586689 -55670841 - L1Md_F2 LINE L1 -11 6571 6192 1 1085 2518 95 3 77 chr12 65587649 65588037 -55669493 - RLTR10D LTR ERVK 0 359 1 1 1085 467 295 41 8 chr12 65588230 65588353 -55669177 + B3 SINE B2 37 163 -53 1 1085 870 189 0 0 chr12 65588355 65588535 -55668995 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1085 864 207 0 0 chr12 65588565 65589230 -55668300 + (TG)n Simple_repeat Simple_repeat 1 665 0 1 1085 687 186 11 22 chr12 65589253 65589434 -55668096 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1 1085 357 189 81 0 chr12 65589445 65589519 -55668011 - HAL1-3A_ME LINE L1 -840 2018 1939 1 1085 395 200 142 0 chr12 65589553 65589673 -55667857 + MER2 DNA MER2_type 92 228 -117 1 1085 427 261 0 26 chr12 65589676 65589790 -55667740 + RMER19C LTR ERVK 499 609 -2 1 1085 231 188 0 0 chr12 65589839 65589887 -55667643 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 1 1085 21 0 0 0 chr12 65590248 65590269 -55667261 + AT_rich Low_complexity Low_complexity 1 21 0 1 1085 226 218 45 0 chr12 65591384 65591494 -55666036 + (TA)n Simple_repeat Simple_repeat 2 116 0 1 1085 967 325 12 26 chr12 65591537 65592049 -55665481 - Lx9 LINE L1 -133 7511 6873 1 1085 1440 275 35 26 chr12 65592053 65592512 -55665018 + Lx9 LINE L1 6450 6912 -732 1 1085 2888 40 0 11 chr12 65592512 65592862 -55664668 + ORR1A1 LTR MaLR 1 346 0 1 1085 1440 275 35 26 chr12 65592862 65592973 -55664557 + Lx9 LINE L1 6913 7024 -620 1 1085 468 306 50 10 chr12 65594166 65594364 -55663166 + Lx9 LINE L1 7268 7473 -171 1 1085 246 349 0 0 chr12 65594417 65594480 -55663050 + tRNA-Ala-GCY_ tRNA tRNA 1 63 -12 1 1085 27 0 0 0 chr12 65594887 65594914 -55662616 + AT_rich Low_complexity Low_complexity 1 27 0 1 1085 243 387 19 89 chr12 65595082 65595295 -55662235 + MLT1D LTR MaLR 1 198 -307 1 1085 297 0 0 0 chr12 65595388 65595421 -55662109 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 1085 369 0 0 0 chr12 65595454 65595495 -55662035 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 1 1085 2752 199 52 10 chr12 65595500 65596118 -55661412 - Lx4B LINE L1 -39 7019 6376 1 1085 237 135 0 0 chr12 65596123 65596160 -55661370 + MLT1D LTR MaLR 389 425 -80 1 1085 228 357 115 9 chr12 65596204 65596317 -55661213 - MIRb SINE MIR -37 231 107 1 1085 725 309 38 51 chr12 65596614 65596907 -55660623 + B4A SINE B4 3 291 -1 1 1085 4367 46 5 38 chr12 65597864 65598447 -55659083 + L1Md_F2 LINE L1 6017 6580 -2 1 1085 201 241 86 0 chr12 65598984 65599042 -55658488 - L2a LINE L2 -2 3424 3362 1 1085 786 258 56 116 chr12 65599173 65599551 -55657979 + ORR1E LTR MaLR 5 359 0 1 1085 3362 140 45 9 chr12 65600017 65600595 -55656935 + Lx2B LINE L1 6398 6996 -4 1 1085 605 289 30 59 chr12 65600684 65600886 -55656644 + B3A SINE B2 2 197 -1 1 1085 533 276 33 46 chr12 65601406 65601558 -55655972 + RSINE1 SINE B4 16 165 0 1 1085 212 292 53 94 chr12 65601853 65602023 -55655507 - MIR3 SINE MIR -5 203 41 1 1085 22 0 0 0 chr12 65602504 65602526 -55655004 + AT_rich Low_complexity Low_complexity 1 22 0 1 1085 558 0 0 0 chr12 65603780 65603842 -55653688 + (TGG)n Simple_repeat Simple_repeat 1 62 0 1 1085 240 130 0 0 chr12 65603845 65603891 -55653639 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 1 1085 367 371 25 40 chr12 65603937 65604215 -55653315 - B4 SINE B4 -18 274 1 1 1085 788 249 195 11 chr12 65604379 65604841 -55652689 - L1MA5 LINE L1 -426 5874 5328 1 1085 676 287 5 22 chr12 65604913 65604945 -55652585 - B3A SINE B2 -16 182 152 1 1085 775 95 32 0 chr12 65604945 65605103 -55652427 + (TG)n Simple_repeat Simple_repeat 1 163 0 1 1085 676 287 5 22 chr12 65605103 65605255 -55652275 - B3A SINE B2 -47 151 1 1 1085 306 265 193 24 chr12 65605256 65605422 -55652108 - L1MA5 LINE L1 -814 5329 5136 1 1085 617 159 0 45 chr12 65605669 65605781 -55651749 - B1_Mur1 SINE Alu -4 145 39 1 1085 245 19 0 134 chr12 65605781 65605900 -55651630 + CT-rich Low_complexity Low_complexity 2 104 0 1 1085 238 274 31 31 chr12 65605929 65605993 -55651537 - ID_B1 SINE B4 -79 145 82 1 1085 912 267 61 23 chr12 65606007 65606317 -55651213 - Lx9 LINE L1 -348 7296 6975 1 1085 22 0 0 0 chr12 65606531 65606553 -55650977 + AT_rich Low_complexity Low_complexity 1 22 0 1 1085 309 355 29 81 chr12 65607080 65607252 -55650278 + LTR78 LTR ERV1 747 909 -395 1 1085 345 354 33 48 chr12 65607273 65607546 -55649984 + LTR78 LTR ERV1 1023 1291 -13 1 1085 4847 43 0 0 chr12 65608051 65608631 -55648899 - L1Md_T LINE L1 0 6582 6003 1 1085 534 300 53 0 chr12 65609153 65609303 -55648227 - B4A SINE B4 -132 160 3 1 1085 355 289 115 100 chr12 65609340 65609513 -55648017 + L1ME3A LINE L1 5694 5890 -283 1 1085 979 151 125 5 chr12 65609513 65609713 -55647817 - URR1A DNA MER1_type 0 226 3 1 1085 355 289 115 100 chr12 65609713 65610008 -55647522 + L1ME3A LINE L1 5891 6169 -4 1 1085 301 276 0 45 chr12 65610339 65610449 -55647081 + GA-rich Low_complexity Low_complexity 4 108 0 1 1085 796 298 53 37 chr12 65610785 65611196 -55646334 - Lx6 LINE L1 -155 7305 6506 1 1085 623 270 112 11 chr12 65611222 65611552 -55645978 - Lx6 LINE L1 -870 6590 5978 1 1085 496 239 86 29 chr12 65611534 65611803 -55645727 - Lx6 LINE L1 -889 6161 5866 1 1085 1285 279 75 16 chr12 65612204 65612644 -55644886 + MER31B LTR ERV1 1 466 0 1 1085 1430 105 0 14 chr12 65612947 65613169 -55644361 - L1Md_F2 LINE L1 0 6582 6364 1 1085 310 318 54 9 chr12 65614161 65614272 -55643258 + MER5A DNA MER1_type 1 116 -73 1 1085 259 351 10 50 chr12 65614312 65614411 -55643119 + MLT1J2 LTR MaLR 272 366 -82 1 1085 471 101 0 0 chr12 65614422 65614501 -55643029 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 1085 263 367 74 23 chr12 65615129 65615344 -55642186 - MLT1A1 LTR MaLR 0 408 183 1 1085 351 98 0 0 chr12 65615640 65615701 -55641829 + (A)n Simple_repeat Simple_repeat 1 61 0 1 1085 195 392 62 0 chr12 65615753 65615850 -55641680 - L2c LINE L2 -185 3202 3100 1 1085 533 276 57 13 chr12 65615895 65616053 -55641477 + RSINE1 SINE B4 1 165 0 1 1085 348 169 0 0 chr12 65616053 65616130 -55641400 + GA-rich Low_complexity Low_complexity 1 77 0 1 1085 269 341 86 68 chr12 65616457 65616677 -55640853 + MIR SINE MIR 8 231 -31 1 1085 194 355 73 0 chr12 65617344 65617458 -55640072 - MIRc SINE MIR -130 146 16 1 1085 198 0 0 0 chr12 65618266 65618288 -55639242 + (TA)n Simple_repeat Simple_repeat 1 22 0 1 1085 23 0 0 0 chr12 65618330 65618353 -55639177 + AT_rich Low_complexity Low_complexity 1 23 0 1 1085 5781 74 8 1 chr12 65618735 65619490 -55638040 - L1_Mus3 LINE L1 -1 6637 5878 1 1085 3772 100 3 7 chr12 65619517 65620082 -55637448 + L1_Mm LINE L1 5302 5864 -19 1 1085 1699 252 85 6 chr12 65620091 65620586 -55636944 - Lx2B LINE L1 -7 6993 6460 1 1085 247 128 0 0 chr12 65620588 65620627 -55636903 + Lx2 LINE L1 6353 6391 -606 1 1085 451 308 19 0 chr12 65620805 65620909 -55636621 + RSINE1 SINE B4 60 165 0 1 1085 23 54 0 0 chr12 65622949 65622986 -55634544 + AT_rich Low_complexity Low_complexity 1 37 0 1 1085 337 145 0 46 chr12 65623003 65623068 -55634462 - RSINE1 SINE B4 -22 143 82 2 1085 233 146 0 20 chr12 65623483 65623532 -55633998 + T-rich Low_complexity Low_complexity 6 53 0 2 1085 3306 181 78 34 chr12 65623823 65624976 -55632554 - L1_Mus2 LINE L1 0 6566 5338 2 1085 4559 134 20 1 chr12 65624980 65625721 -55631809 + Lx2 LINE L1 5889 6643 -354 2 1085 1382 148 0 0 chr12 65625721 65625944 -55631586 + Lx2 LINE L1 6775 6997 0 2 1085 268 221 30 65 chr12 65626644 65626813 -55630717 - Lx9 LINE L1 -4 7640 7478 2 1085 444 208 0 0 chr12 65626835 65626941 -55630589 + (CA)n Simple_repeat Simple_repeat 1 106 0 2 1085 2330 202 81 33 chr12 65626952 65627335 -55630195 - Lx9 LINE L1 -200 7444 7035 2 1085 2699 69 53 11 chr12 65627335 65627715 -55629815 + MTA_Mm LTR MaLR 1 396 0 2 1085 2330 202 81 33 chr12 65627715 65627976 -55629554 - Lx9 LINE L1 -610 7034 6769 2 1085 377 337 0 0 chr12 65628248 65628343 -55629187 - B3A SINE B2 -103 95 1 2 1085 684 223 0 71 chr12 65628356 65628496 -55629034 - B1_Mur2 SINE Alu -8 141 12 2 1085 320 304 11 169 chr12 65628358 65628536 -55628994 - MT2B LTR ERVL -316 285 136 2 1085 6787 94 2 5 chr12 65628536 65629681 -55627849 - L1_Mus1 LINE L1 -567 6000 4860 2 1085 1263 124 0 5 chr12 65629673 65629876 -55627654 - L1_Mm LINE L1 -709 5174 4973 2 1085 3878 82 0 2 chr12 65629876 65630407 -55627123 + L1_Mus1 LINE L1 6061 6567 0 2 1085 724 294 20 0 chr12 65630444 65630645 -55626885 - B3 SINE B2 -11 205 1 2 1085 243 0 0 0 chr12 65631402 65631429 -55626101 + (TAGA)n Simple_repeat Simple_repeat 1 27 0 2 1085 526 269 28 17 chr12 65631863 65632041 -55625489 + L1_Rod LINE L1 67 246 -6926 2 1085 428 268 20 68 chr12 65632188 65632336 -55625194 + B1_Mur2 SINE Alu 1 141 -8 2 1085 25 31 0 0 chr12 65632711 65632743 -55624787 + AT_rich Low_complexity Low_complexity 1 32 0 2 1085 1390 220 107 28 chr12 65633150 65633514 -55624016 - MTD LTR MaLR -7 412 20 2 1085 1246 211 92 70 chr12 65633567 65633924 -55623606 + Lx5 LINE L1 6686 7050 0 2 1085 1048 95 0 26 chr12 65634002 65634153 -55623377 + B1_Mus1 SINE Alu 2 148 0 2 1085 213 151 0 0 chr12 65634179 65634232 -55623298 + A-rich Low_complexity Low_complexity 1 53 0 2 1085 261 250 45 0 chr12 65634232 65634320 -55623210 - MTC-int LTR MaLR -100 1158 1067 2 1085 3299 78 6 39 chr12 65634320 65634838 -55622692 - Lx3_Mus LINE L1 -778 6231 5731 2 1085 5372 76 54 0 chr12 65634847 65635567 -55621963 + Lx3_Mus LINE L1 6251 7009 0 2 1085 233 0 62 0 chr12 65635646 65635678 -55621852 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1085 2553 66 153 0 chr12 65635738 65636104 -55621426 + BGLII_Mus LTR ERVK 1 422 0 2 1085 1385 275 173 37 chr12 65636139 65636486 -55621044 - MTC-int LTR MaLR -472 786 413 2 1085 243 0 0 0 chr12 65636486 65636513 -55621017 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 2 1085 1385 283 145 65 chr12 65636513 65636899 -55620631 - MTC-int LTR MaLR -846 412 2 2 1085 914 268 74 15 chr12 65636922 65637197 -55620333 - MTD LTR MaLR -38 341 52 2 1085 3866 118 39 31 chr12 65637208 65637848 -55619682 - Lx2 LINE L1 0 6997 6353 2 1085 300 136 0 0 chr12 65637848 65637892 -55619638 - B1_Mus1 SINE Alu -102 46 3 2 1085 8708 145 56 24 chr12 65637894 65638094 -55619436 - L1_Mur2 LINE L1 -428 5449 5243 2 1085 273 29 0 0 chr12 65638094 65638128 -55619402 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1085 8708 145 56 24 chr12 65638128 65638609 -55618921 - L1_Mur2 LINE L1 -635 5242 4775 2 1085 4096 89 20 10 chr12 65638609 65639199 -55618331 - L1_Mus4 LINE L1 0 6636 6041 2 1085 8708 145 56 24 chr12 65639199 65640240 -55617290 - L1_Mur2 LINE L1 -1103 4774 3670 2 1085 7672 50 0 3 chr12 65640245 65641224 -55616306 - L1Md_F2 LINE L1 -19 6563 5588 2 1085 363 23 0 0 chr12 65641250 65641294 -55616236 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1085 247 229 65 16 chr12 65641328 65641390 -55616140 - MTD LTR MaLR -350 71 7 2 1085 182 227 75 15 chr12 65641971 65642038 -55615492 + L3 LINE CR1 2683 2753 -1736 2 1085 818 228 83 212 chr12 65642586 65643198 -55614332 + MT2A LTR ERVL 1 533 0 2 1085 562 354 168 22 chr12 65643479 65643932 -55613598 - LTR40a LTR ERVL 0 519 1 2 1085 263 321 0 23 chr12 65643935 65644021 -55613509 - HERVL40-int LTR ERVL -4 5526 5443 2 1085 294 29 0 0 chr12 65644805 65644840 -55612690 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1085 861 328 36 10 chr12 65645370 65645758 -55611772 - HERVL40-int LTR ERVL -1956 3574 3177 2 1085 1117 125 126 34 chr12 65645779 65645873 -55611657 - URR1A DNA MER1_type 0 226 131 2 1085 1957 29 4 12 chr12 65645873 65646119 -55611411 + L1Md_F3 LINE L1 6339 6582 -2 2 1085 1117 125 126 34 chr12 65646119 65646231 -55611299 - URR1A DNA MER1_type -96 130 1 2 1085 332 260 60 0 chr12 65646407 65646507 -55611023 - RMER15 LTR ERVL -57 518 413 2 1085 290 273 64 39 chr12 65647131 65647287 -55610243 - HERVL40-int LTR ERVL -3938 1592 1433 2 1085 329 370 67 32 chr12 65647339 65647685 -55609845 - HERVL40-int LTR ERVL -4181 1349 992 2 1085 379 340 9 9 chr12 65647871 65647981 -55609549 - LTR40b LTR ERVL -231 231 122 2 1085 198 0 0 0 chr12 65647993 65648015 -55609515 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1085 2154 111 12 0 chr12 65649429 65649754 -55607776 - L1_Mus3 LINE L1 -185 5698 5370 2 1085 6523 63 14 2 chr12 65649747 65650648 -55606882 + L1_Mus3 LINE L1 5727 6638 0 2 1085 262 324 123 45 chr12 65651745 65651900 -55605630 + MIRc SINE MIR 18 184 -84 2 1085 567 292 102 28 chr12 65651951 65652045 -55605485 + MTD LTR MaLR 6 115 -304 2 1085 1611 148 75 111 chr12 65652045 65652470 -55605060 + RMER17C LTR ERVK 1 410 0 2 1085 567 302 145 34 chr12 65652470 65652714 -55604816 + MTD LTR MaLR 86 407 -12 2 1085 2043 204 68 56 chr12 65653415 65653693 -55603837 + Lx7 LINE L1 2611 2874 -3006 2 1085 221 0 35 0 chr12 65653693 65653722 -55603808 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1085 2043 204 68 56 chr12 65653722 65654189 -55603341 + Lx7 LINE L1 2875 3364 -2516 2 1085 1318 188 72 14 chr12 65654192 65654538 -55602992 + Lx7 LINE L1 3692 4057 -1823 2 1085 4150 214 32 7 chr12 65654544 65655654 -55601876 + Lx7 LINE L1 4814 5950 -1746 2 1085 988 112 179 36 chr12 65655712 65655935 -55601595 - Lx LINE L1 0 6654 6400 2 1085 2262 98 36 0 chr12 65655929 65656265 -55601265 + Lx LINE L1 6045 6392 -262 2 1085 320 264 232 5 chr12 65656264 65656462 -55601068 + Lx7 LINE L1 5892 6134 -1562 2 1085 15676 100 6 1 chr12 65656476 65659655 -55597875 + L1_Mus1 LINE L1 3393 6567 0 2 1085 209 159 0 22 chr12 65659737 65659782 -55597748 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1085 384 273 89 22 chr12 65660302 65660437 -55597093 + RMER15 LTR ERVL 277 420 -155 2 1085 1684 175 22 10 chr12 65660466 65660777 -55596753 - RMER12 LTR ERVK -1007 315 1 2 1085 289 316 148 60 chr12 65661784 65661966 -55595564 + MLT1I LTR MaLR 90 287 -124 2 1085 940 285 7 62 chr12 65662030 65662337 -55595193 + B4 SINE B4 3 292 0 2 1085 21 36 0 0 chr12 65662697 65662725 -55594805 + AT_rich Low_complexity Low_complexity 1 28 0 2 1085 268 214 0 0 chr12 65662769 65662825 -55594705 - MLT2B4 LTR ERVL 0 567 512 2 1085 318 149 35 0 chr12 65662853 65662940 -55594590 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1085 715 303 67 47 chr12 65663063 65663337 -55594193 - MLT2B4 LTR ERVL -252 304 20 2 1085 5593 145 79 11 chr12 65663337 65664024 -55593506 + Lx2 LINE L1 5907 6626 -371 2 1085 243 133 0 0 chr12 65664024 65664069 -55593461 + (CTAGGG)n Simple_repeat Simple_repeat 3 47 0 2 1085 5593 145 79 11 chr12 65664069 65664402 -55593128 + Lx2 LINE L1 6627 6997 0 2 1085 715 303 67 47 chr12 65664402 65664425 -55593105 - MLT2B4 LTR ERVL -537 19 1 2 1085 315 276 178 16 chr12 65664724 65664851 -55592679 - MLT1F1 LTR MaLR -22 547 400 2 1085 391 218 0 54 chr12 65664851 65664943 -55592587 + B4A SINE B4 1 87 -205 2 1085 375 130 50 10 chr12 65664949 65665050 -55592480 + GA-rich Low_complexity Low_complexity 1 105 0 2 1085 328 344 114 8 chr12 65665101 65665233 -55592297 + B4A SINE B4 141 286 -6 2 1085 241 250 0 39 chr12 65665274 65665378 -55592152 + GA-rich Low_complexity Low_complexity 1 100 0 2 1085 683 80 28 28 chr12 65665368 65665510 -55592020 + (CAGAGA)n Simple_repeat Simple_repeat 3 144 0 2 1085 246 346 102 7 chr12 65665541 65665678 -55591852 - MLT1F1 LTR MaLR -224 324 175 2 1085 500 250 0 30 chr12 65666090 65666189 -55591341 + PB1D10 SINE Alu 8 103 -14 2 135 1232 335 120 52 chr12 65666864 65667246 -55590284 - MER44C DNA MER2_type -4 729 352 2 1086 282 73 0 0 chr12 65667246 65667287 -55590243 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1086 1232 335 120 52 chr12 65667287 65667577 -55589953 - MER44C DNA MER2_type -382 351 11 2 1086 264 317 104 36 chr12 65669611 65669804 -55587726 + MamGypLTR1d LTR Gypsy 2 207 -606 2 1086 4572 56 0 43 chr12 65669805 65670416 -55587114 + L1Md_F2 LINE L1 5986 6570 -12 2 1086 647 340 104 25 chr12 65670719 65671201 -55586329 - MT2A LTR ERVL -2 531 12 2 1086 235 430 18 0 chr12 65673313 65673427 -55584103 - L4 LINE RTE -404 1625 1510 2 1086 1482 237 108 20 chr12 65673598 65674085 -55583445 - RMER4B LTR ERVK 0 585 18 2 1086 7488 33 11 1 chr12 65674085 65674992 -55582538 + L1Md_F3 LINE L1 5655 6570 -14 2 1086 1482 249 100 21 chr12 65674992 65675011 -55582519 - RMER4B LTR ERVK -568 17 4 2 1086 204 274 0 0 chr12 65675767 65675818 -55581712 + GA-rich Low_complexity Low_complexity 2 52 0 2 1086 235 228 0 0 chr12 65676362 65676419 -55581111 + (ATG)n Simple_repeat Simple_repeat 2 58 0 2 1086 778 243 34 11 chr12 65676529 65676704 -55580826 + B3A SINE B2 2 180 -18 2 1086 315 0 0 0 chr12 65676726 65676761 -55580769 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1086 22 35 0 0 chr12 65677112 65677141 -55580389 + AT_rich Low_complexity Low_complexity 1 29 0 2 1086 279 41 20 39 chr12 65678186 65678237 -55579293 + (CAAAAA)n Simple_repeat Simple_repeat 4 53 0 2 1086 9097 153 50 29 chr12 65678377 65678934 -55578596 + Lx4A LINE L1 1150 1735 -4142 2 1086 1511 96 5 0 chr12 65678934 65679152 -55578378 + L1_Mus2 LINE L1 6348 6566 0 2 1086 9097 149 39 29 chr12 65679152 65679177 -55578353 + Lx4A LINE L1 1736 1740 -4137 2 1086 459 0 0 0 chr12 65679177 65679228 -55578302 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1086 9097 149 39 29 chr12 65679228 65680663 -55576867 + Lx4A LINE L1 1741 3191 -2686 2 1086 7554 53 14 1 chr12 65680661 65681801 -55575729 + L1_Mus1 LINE L1 5410 6565 -2 2 1086 5408 132 18 5 chr12 65681826 65682804 -55574726 + Lx4A LINE L1 3177 4167 -1710 2 1086 4341 144 75 8 chr12 65682806 65684326 -55573204 + Lx4A LINE L1 5018 6635 -423 2 1086 4358 186 54 51 chr12 65684318 65685728 -55571802 + Lx5 LINE L1 4752 6173 -877 2 1086 3070 246 39 1 chr12 65685717 65686414 -55571116 + Lx5 LINE L1 6310 7032 -18 2 1086 37 52 0 0 chr12 65686414 65686472 -55571058 + AT_rich Low_complexity Low_complexity 1 58 0 2 1086 322 154 0 0 chr12 65687368 65687420 -55570110 - URR1B DNA MER1_type 0 225 174 2 1086 1076 330 95 68 chr12 65687693 65688292 -55569238 + MLT1E2 LTR MaLR 11 625 -2 2 1086 477 277 32 1 chr12 65688504 65688615 -55568915 + B1F SINE Alu 10 124 -25 2 1086 243 0 0 0 chr12 65689199 65689226 -55568304 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1086 29412 90 15 7 chr12 65689886 65695057 -55562473 + L1Md_F2 LINE L1 371 5586 -297 2 1086 7798 59 1 8 chr12 65695057 65696052 -55561478 + L1Md_F2 LINE L1 5587 6574 -8 2 1086 23 54 0 0 chr12 65696137 65696174 -55561356 + AT_rich Low_complexity Low_complexity 1 37 0 2 1086 296 227 14 43 chr12 65696189 65696258 -55561272 + RMER15 LTR ERVL 1 67 -508 2 1086 411 21 0 0 chr12 65696261 65696309 -55561221 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2 1086 585 309 12 12 chr12 65696444 65696611 -55560919 + RMER15 LTR ERVL 273 439 -136 2 1086 1415 181 131 59 chr12 65697030 65697388 -55560142 + ORR1C2 LTR MaLR 1 384 0 2 1086 198 167 0 0 chr12 65697833 65697869 -55559661 + A-rich Low_complexity Low_complexity 1 36 0 2 1086 430 267 17 57 chr12 65698161 65698336 -55559194 - Lx7 LINE L1 -522 7174 7007 2 1086 339 247 31 31 chr12 65698343 65698439 -55559091 + Lx7 LINE L1 7206 7301 -395 2 1086 605 281 39 30 chr12 65699053 65699284 -55558246 + RMER15-int LTR ERVL 4166 4398 -601 3 1086 427 119 0 35 chr12 65699284 65699371 -55558159 + CT-rich Low_complexity Low_complexity 4 87 0 3 1086 207 0 0 0 chr12 65699378 65699401 -55558129 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1086 1620 280 44 62 chr12 65699401 65699988 -55557542 + RMER15-int LTR ERVL 4396 4972 -27 3 1086 317 280 21 169 chr12 65699989 65700178 -55557352 + RMER15 LTR ERVL 1 161 -414 3 1086 782 92 0 8 chr12 65700186 65700317 -55557213 + (TC)n Simple_repeat Simple_repeat 2 131 0 3 1086 546 314 86 47 chr12 65700319 65700576 -55556954 + RMER15 LTR ERVL 293 559 -16 3 1086 558 43 0 0 chr12 65700830 65700899 -55556631 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1086 1846 241 53 72 chr12 65701122 65701399 -55556131 + Lx8 LINE L1 5148 5454 -426 3 1086 183 42 0 0 chr12 65701399 65701423 -55556107 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 1086 1846 259 49 78 chr12 65701423 65702000 -55555530 + Lx8 LINE L1 5455 5947 -1526 3 1086 1260 97 10 15 chr12 65702000 65702199 -55555331 + L1_Mus3 LINE L1 6440 6637 -1 3 1086 1663 327 34 100 chr12 65702199 65702390 -55555140 + Lx8 LINE L1 5948 6097 -1376 3 1086 1556 230 62 25 chr12 65702390 65702791 -55554739 + MTD LTR MaLR 4 419 0 3 1086 1663 327 34 100 chr12 65702791 65702922 -55554608 + Lx8 LINE L1 6098 6207 -1266 3 1086 636 14 0 0 chr12 65702922 65702995 -55554535 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 1086 1663 327 34 100 chr12 65702995 65703654 -55553876 + Lx8 LINE L1 6208 6883 -590 3 1086 39433 5 0 0 chr12 65703738 65710107 -55547423 - L1Md_A LINE L1 0 6582 214 3 1086 465 278 0 49 chr12 65710168 65710353 -55547177 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 3 1086 386 39 0 0 chr12 65710829 65710880 -55546650 + L1_Mus2 LINE L1 6514 6564 -2 3 1086 235 257 25 92 chr12 65710946 65711066 -55546464 + PB1D10 SINE Alu 2 113 -4 3 1086 1153 61 0 20 chr12 65712490 65712640 -55544890 + B1_Mus2 SINE Alu 1 147 0 3 1086 261 0 0 0 chr12 65712640 65712669 -55544861 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1086 311 0 0 25 chr12 65712917 65712957 -55544573 + (TTA)n Simple_repeat Simple_repeat 1 39 0 3 1086 3177 61 2 5 chr12 65712957 65713388 -55544142 - L1Md_F2 LINE L1 -23 6559 6130 3 1086 235 274 11 87 chr12 65713562 65713654 -55543876 + B1_Mur3 SINE Alu 1 85 -64 3 1086 22 56 0 0 chr12 65713957 65713993 -55543537 + AT_rich Low_complexity Low_complexity 1 36 0 3 1086 480 77 0 0 chr12 65714041 65714106 -55543424 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1086 203 280 65 26 chr12 65714787 65714864 -55542666 - MIRm SINE MIR -130 146 67 3 1086 522 0 0 0 chr12 65715913 65715971 -55541559 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1086 22 56 0 0 chr12 65717233 65717269 -55540261 + AT_rich Low_complexity Low_complexity 1 36 0 3 1086 424 292 18 58 chr12 65717560 65717731 -55539799 - RSINE1 SINE B4 0 165 2 3 1086 726 246 261 38 chr12 65718033 65718324 -55539206 - MTEa LTR MaLR -20 359 4 3 1086 367 271 115 46 chr12 65718326 65718500 -55539030 - MTEa-int LTR MaLR 0 1580 1395 3 1086 1193 42 14 0 chr12 65718947 65719089 -55538441 + B1_Mm SINE Alu 1 144 -3 3 1086 189 0 0 0 chr12 65719573 65719594 -55537936 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1086 776 11 11 0 chr12 65719884 65719892 -55537638 + (GAA)n Simple_repeat Simple_repeat 2 9 0 3 1086 1089 136 0 0 chr12 65719892 65720069 -55537461 + (GGA)n Simple_repeat Simple_repeat 2 178 0 3 1086 776 11 11 0 chr12 65720069 65720155 -55537375 + (GAA)n Simple_repeat Simple_repeat 1 87 0 3 1086 252 240 0 0 chr12 65720227 65720277 -55537253 + ID4 SINE ID 3 52 -31 3 1086 216 97 0 0 chr12 65720673 65720704 -55536826 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1086 615 14 0 0 chr12 65721224 65721296 -55536234 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 3 1086 512 301 84 20 chr12 65721868 65722119 -55535411 + MER33 DNA MER1_type 1 267 -57 3 1086 377 109 0 15 chr12 65722174 65722239 -55535291 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1086 233 269 57 9 chr12 65722239 65722344 -55535186 + Lx9 LINE L1 7518 7627 -17 3 1086 23 0 0 0 chr12 65722330 65722353 -55535177 + AT_rich Low_complexity Low_complexity 1 23 0 3 1086 362 259 93 25 chr12 65722367 65722529 -55535001 + L1M3 LINE L1 5565 5737 -452 3 1086 685 288 80 8 chr12 65722952 65723068 -55534462 + Lx5 LINE L1 6632 6765 -931 3 1086 390 74 0 0 chr12 65723068 65723122 -55534408 + (CAT)n Simple_repeat Simple_repeat 1 54 0 3 1086 2177 275 54 25 chr12 65723122 65723717 -55533813 + Lx5 LINE L1 6455 7050 0 3 1086 343 345 26 34 chr12 65723958 65724075 -55533455 + ID_B1 SINE B4 6 121 -103 3 1086 474 120 0 0 chr12 65724106 65724181 -55533349 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 3 1086 224 344 7 132 chr12 65724965 65725116 -55532414 + RSINE1 SINE B4 34 165 0 3 1086 42 36 0 0 chr12 65725138 65725194 -55532336 + AT_rich Low_complexity Low_complexity 1 56 0 3 1086 26 50 0 0 chr12 65725658 65725698 -55531832 + AT_rich Low_complexity Low_complexity 1 40 0 3 1086 480 334 119 85 chr12 65725749 65726161 -55531369 - MLT1C LTR MaLR 0 467 36 3 1086 356 308 76 71 chr12 65726872 65727082 -55530448 + MamRep564 Unknown Unknown 24 234 -123 3 1086 245 299 124 7 chr12 65727899 65728044 -55529486 - MER5A1 DNA MER1_type -4 162 1 3 1086 1586 219 96 13 chr12 65728860 65729244 -55528286 - MTD LTR MaLR -3 416 1 3 1086 309 191 44 0 chr12 65729755 65729823 -55527707 + MTD LTR MaLR 41 111 -308 3 1086 348 125 0 0 chr12 65731172 65731236 -55526294 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1086 198 26 77 0 chr12 65731259 65731298 -55526232 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 3 1086 1107 236 53 32 chr12 65731821 65732106 -55525424 + B4A SINE B4 1 291 -1 3 1086 271 211 26 26 chr12 65732107 65732224 -55525306 + (CATATA)n Simple_repeat Simple_repeat 1 117 0 3 1086 236 240 0 0 chr12 65732242 65732292 -55525238 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1086 200 347 102 20 chr12 65732463 65732610 -55524920 - L2c LINE L2 -49 3338 3180 3 1086 232 122 0 20 chr12 65732620 65732670 -55524860 - RMER4B LTR ERVK -11 574 526 3 1086 1714 222 59 54 chr12 65732687 65733110 -55524420 - RMER4B LTR ERVK -145 440 16 3 1086 261 292 0 0 chr12 65733393 65733465 -55524065 - L1MA9 LINE L1 -47 6265 6194 3 1086 299 71 0 0 chr12 65733543 65733585 -55523945 - L1_Mus1 LINE L1 -503 6064 6023 3 1086 3703 80 2 12 chr12 65733585 65734089 -55523441 + L1_Mus1 LINE L1 6068 6566 -1 3 1086 326 314 114 82 chr12 65734200 65734481 -55523049 + B4A SINE B4 3 292 0 3 1086 511 246 6 6 chr12 65734487 65734667 -55522863 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1086 641 292 13 0 chr12 65734785 65734939 -55522591 + RSINE1 SINE B4 5 160 -5 3 1086 513 0 0 0 chr12 65734952 65735009 -55522521 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 3 1086 459 288 58 32 chr12 65735952 65736142 -55521388 - B4 SINE B4 -97 195 1 3 1086 793 270 96 14 chr12 65736227 65736520 -55521010 - Lx8 LINE L1 -342 7131 6815 3 1086 1910 183 62 19 chr12 65737134 65737557 -55519973 + BGLII_B LTR ERVK 1 441 0 3 1086 403 342 87 31 chr12 65738504 65738790 -55518740 + MLT1A1 LTR MaLR 65 408 0 3 1086 219 286 0 0 chr12 65738836 65738885 -55518645 + ID4_ SINE ID 2 50 -33 3 1086 875 296 116 42 chr12 65739302 65740040 -55517490 - MER63C DNA AcHobo -48 882 97 3 1086 470 284 8 8 chr12 65740036 65740153 -55517377 - PB1D10 SINE Alu 0 117 1 3 1086 322 333 19 39 chr12 65741630 65741786 -55515744 - RSINE1 SINE B4 -10 155 3 3 1086 232 70 47 0 chr12 65742677 65742720 -55514810 + (GGGAA)n Simple_repeat Simple_repeat 3 47 0 3 1086 461 299 44 15 chr12 65743393 65743529 -55514001 + RSINE1 SINE B4 7 146 -19 3 1086 405 0 0 0 chr12 65743536 65743581 -55513949 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1086 266 293 0 0 chr12 65745664 65745739 -55511791 + RMER15-int LTR ERVL 4478 4552 -447 3 1086 2144 289 90 17 chr12 65745739 65746496 -55511034 + Lx8 LINE L1 6655 7466 -7 3 1086 30 0 0 0 chr12 65746594 65746624 -55510906 + AT_rich Low_complexity Low_complexity 1 30 0 3 1086 1021 87 7 0 chr12 65746624 65746762 -55510768 + B1_Mus2 SINE Alu 1 139 -8 3 1086 24 0 0 0 chr12 65746773 65746797 -55510733 + AT_rich Low_complexity Low_complexity 1 24 0 3 1086 567 279 94 20 chr12 65747109 65747310 -55510220 - Lx8 LINE L1 -435 7038 6823 3 1086 5633 156 16 13 chr12 65748182 65748582 -55508948 + Lx4B LINE L1 4891 5298 -579 3 1086 645 115 53 0 chr12 65748582 65748695 -55508835 + Lx LINE L1 6529 6647 -7 3 1086 5633 166 17 9 chr12 65748695 65749501 -55508029 + Lx4B LINE L1 5299 6110 -948 3 1086 3121 75 0 5 chr12 65749507 65749925 -55507605 + L1Md_F2 LINE L1 4462 4877 -1006 3 1086 2893 51 0 0 chr12 65749924 65750280 -55507250 + L1Md_F2 LINE L1 5230 5585 -298 3 1086 8234 33 4 3 chr12 65750281 65751264 -55506266 + L1Md_F2 LINE L1 5587 6570 -12 3 1086 5791 57 0 0 chr12 65751264 65751988 -55505542 + L1Md_F2 LINE L1 4862 5585 -298 3 1086 8091 45 3 2 chr12 65751989 65752984 -55504546 + L1Md_F2 LINE L1 5587 6582 0 3 1086 1098 179 0 39 chr12 65753015 65753218 -55504312 + Lx4B LINE L1 6190 6384 -674 3 1086 1173 106 11 11 chr12 65753218 65753399 -55504131 + B2_Mm2 SINE B2 1 181 -14 3 1086 402 323 8 59 chr12 65753399 65753419 -55504111 + Lx3C LINE L1 6388 6402 -574 3 1086 780 68 0 0 chr12 65753419 65753522 -55504008 + (GGGGA)n Simple_repeat Simple_repeat 1 103 0 3 1086 402 323 8 59 chr12 65753522 65753534 -55503996 + Lx3C LINE L1 6403 6416 -560 3 1086 191 145 100 14 chr12 65753535 65753605 -55503925 + GA-rich Low_complexity Low_complexity 3 78 0 3 1086 2524 202 93 63 chr12 65753611 65753845 -55503685 + Lx4B LINE L1 6372 6639 -419 3 1086 5029 12 0 0 chr12 65753845 65754408 -55503122 + L1Md_T LINE L1 6020 6582 0 3 1086 2524 202 93 63 chr12 65754408 65754839 -55502691 + Lx4B LINE L1 6640 7056 -2 3 1086 1522 238 9 3 chr12 65755212 65755532 -55501998 + Lx6 LINE L1 7138 7459 -1 3 1086 619 293 29 64 chr12 65755533 65755737 -55501793 - B3 SINE B2 -12 204 8 3 1086 221 269 60 60 chr12 65756499 65756582 -55500948 - MIRc SINE MIR -76 192 110 3 1086 306 257 0 13 chr12 65756948 65757023 -55500507 - RLTR24 LTR ERV1 -455 74 1 3 1086 328 325 33 8 chr12 65757485 65757606 -55499924 + B1F SINE Alu 25 148 -1 3 1086 904 66 13 19 chr12 65757961 65758115 -55499415 + L1Md_F2 LINE L1 6430 6582 0 3 1086 342 341 86 89 chr12 65758175 65758513 -55499017 + L1MB8 LINE L1 5841 6177 -1 3 1086 270 0 0 0 chr12 65758921 65758951 -55498579 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1086 458 310 26 0 chr12 65759950 65760105 -55497425 + L1MA6 LINE L1 5898 6056 -244 3 1086 260 53 26 0 chr12 65760228 65760266 -55497264 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1086 234 0 0 0 chr12 65760784 65760810 -55496720 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1086 466 231 23 0 chr12 65761216 65761346 -55496184 - L1MA7 LINE L1 -2 6289 6157 4 1086 1073 268 152 28 chr12 65761341 65762027 -55495503 - L1MA8 LINE L1 -5 6997 6221 4 1086 3722 271 96 45 chr12 65762088 65763510 -55494020 - L1MA8 LINE L1 -1714 5131 3656 4 1086 628 135 311 0 chr12 65763510 65763658 -55493872 - B2_Mm2 SINE B2 0 195 2 4 1086 3722 271 96 45 chr12 65763658 65764288 -55493242 - L1MA8 LINE L1 -3190 3655 2976 4 1086 360 0 0 0 chr12 65764292 65764332 -55493198 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1086 659 270 52 19 chr12 65764333 65764488 -55493042 - B3A SINE B2 -38 160 1 4 1086 814 222 57 8 chr12 65764489 65764793 -55492737 - L1MA8 LINE L1 -3897 2948 2629 4 1086 1386 264 88 27 chr12 65764820 65765087 -55492443 + RLTR40 LTR ERVK 22 296 -521 4 1086 402 69 0 0 chr12 65765087 65765145 -55492385 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1086 1386 255 346 24 chr12 65765145 65765468 -55492062 + RLTR40 LTR ERVK 297 732 -85 4 1086 869 265 70 70 chr12 65765550 65765891 -55491639 - ORR1E LTR MaLR -11 348 8 4 1086 2407 230 52 11 chr12 65766053 65766776 -55490754 + Lx7 LINE L1 5517 6272 -1424 4 1086 2171 178 116 68 chr12 65766830 65767262 -55490268 - Lx9 LINE L1 -266 7378 6915 4 1086 3249 39 3 0 chr12 65767262 65767646 -55489884 + IAPEY_LTR LTR ERVK 1 385 0 4 1086 2171 178 116 68 chr12 65767646 65767730 -55489800 - Lx9 LINE L1 -730 6914 6837 4 1086 1606 274 89 4 chr12 65767712 65768407 -55489123 + Lx7 LINE L1 6615 7368 -328 4 1086 22 0 0 0 chr12 65768551 65768573 -55488957 + AT_rich Low_complexity Low_complexity 1 22 0 4 1086 5466 103 2 24 chr12 65768573 65769402 -55488128 + Lx LINE L1 5843 6653 -1 4 1086 1138 76 0 0 chr12 65769447 65769591 -55487939 + B1_Mm SINE Alu 2 145 -2 4 1086 315 0 0 0 chr12 65769591 65769626 -55487904 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1086 2461 306 78 44 chr12 65770677 65771707 -55485823 + L1MA6 LINE L1 4203 5299 -581 4 1086 1403 153 136 0 chr12 65771707 65771994 -55485536 + ORR1A2 LTR MaLR 1 326 -1 4 1086 2461 306 78 44 chr12 65771994 65772146 -55485384 + L1MA6 LINE L1 5300 5442 -438 4 1086 1057 230 5 0 chr12 65772146 65772359 -55485171 + B3 SINE B2 2 215 -1 4 1086 2461 307 72 46 chr12 65772359 65772815 -55484715 + L1MA6 LINE L1 5443 5936 -364 4 1086 41 0 0 0 chr12 65772876 65772917 -55484613 + AT_rich Low_complexity Low_complexity 1 41 0 4 1086 501 17 0 0 chr12 65773582 65773640 -55483890 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1086 3339 165 31 11 chr12 65773720 65774234 -55483296 - RMER6-int LTR ERVK -2543 634 123 4 1086 2200 117 100 72 chr12 65774234 65774703 -55482827 + RLTR44D LTR ERVK 3 484 -2 4 1086 3339 165 31 11 chr12 65774703 65774808 -55482722 - RMER6-int LTR ERVK -3055 122 3 4 1086 656 292 65 30 chr12 65774816 65774831 -55482699 - B3 SINE B2 -8 208 196 4 1086 351 0 0 0 chr12 65774831 65774870 -55482660 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1086 656 292 65 30 chr12 65774870 65775055 -55482475 - B3 SINE B2 -21 195 1 4 1086 308 293 13 0 chr12 65775097 65775172 -55482358 - ID4 SINE ID -4 79 4 4 1086 23 0 0 0 chr12 65775575 65775598 -55481932 + AT_rich Low_complexity Low_complexity 1 23 0 4 1086 30 45 0 0 chr12 65775623 65775667 -55481863 + AT_rich Low_complexity Low_complexity 1 44 0 4 1086 2166 215 168 9 chr12 65776350 65776923 -55480607 + Lx7 LINE L1 6663 7326 -370 4 1086 293 253 12 0 chr12 65776923 65777006 -55480524 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 1086 266 324 14 35 chr12 65777049 65777190 -55480340 + Lx7 LINE L1 7559 7696 0 4 1086 4530 48 3 0 chr12 65777788 65778372 -55479158 + L1Md_F2 LINE L1 5000 5585 -298 4 1086 8060 41 2 4 chr12 65778373 65779359 -55478171 + L1Md_F2 LINE L1 5587 6570 -12 4 1086 3451 25 2 0 chr12 65779547 65779942 -55477588 + MTA_Mm LTR MaLR 1 396 0 4 1086 9688 17 0 0 chr12 65779942 65781040 -55476490 + MTA_Mm-int LTR MaLR 1 1098 0 4 1086 3472 23 2 0 chr12 65781040 65781435 -55476095 + MTA_Mm LTR MaLR 1 396 0 4 1086 344 200 12 0 chr12 65781443 65781528 -55476002 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 1086 510 244 69 0 chr12 65781910 65782041 -55475489 - B3A SINE B2 -56 142 3 4 1086 256 323 31 25 chr12 65782063 65782225 -55475305 + Lx7 LINE L1 5673 5835 -1861 4 1086 304 403 41 18 chr12 65782599 65782819 -55474711 - MIRb SINE MIR -31 237 13 4 1086 1209 291 46 14 chr12 65783647 65784146 -55473384 - L1MB3 LINE L1 -41 6142 5628 4 1086 184 267 49 16 chr12 65784695 65784756 -55472774 + MIRc SINE MIR 3 65 -203 4 1086 200 338 48 83 chr12 65786795 65786940 -55470590 + MIRm SINE MIR 134 273 -3 4 1086 280 295 77 0 chr12 65786943 65787021 -55470509 + MLT1M LTR MaLR 32 115 -557 4 1086 696 342 109 30 chr12 65787076 65787444 -55470086 - MLT1H LTR MaLR -34 515 119 4 1086 1143 68 0 7 chr12 65787626 65787775 -55469755 + B1_Mus1 SINE Alu 1 148 0 4 1086 23 0 0 0 chr12 65788300 65788323 -55469207 + AT_rich Low_complexity Low_complexity 1 23 0 4 1086 962 183 85 19 chr12 65789150 65789362 -55468168 - URR1A DNA MER1_type 0 226 1 4 1086 633 14 0 0 chr12 65790061 65790135 -55467395 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1086 426 20 0 0 chr12 65790366 65790417 -55467113 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1086 22 0 0 0 chr12 65790420 65790442 -55467088 + AT_rich Low_complexity Low_complexity 1 22 0 4 1086 1284 283 36 61 chr12 65790635 65791161 -55466369 + Lx7 LINE L1 6092 6604 -1092 4 1086 738 233 0 0 chr12 65791161 65791341 -55466189 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 4 1086 180 0 0 0 chr12 65791347 65791367 -55466163 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1086 301 202 12 25 chr12 65791367 65791448 -55466082 + Lx7 LINE L1 6644 6723 -973 4 1086 315 206 69 49 chr12 65791535 65791637 -55465893 - L1MD LINE L1 -2949 3197 3094 4 1086 390 225 83 128 chr12 65792374 65792406 -55465124 - B2_Mm2 SINE B2 0 195 162 4 1086 426 120 0 0 chr12 65792406 65792481 -55465049 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1086 660 225 83 128 chr12 65792481 65792652 -55464878 - B3A SINE B2 -34 161 1 4 1086 2037 101 68 19 chr12 65792661 65792785 -55464745 - Lx LINE L1 0 6654 6535 4 1086 180 0 0 0 chr12 65792785 65792805 -55464725 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 4 1086 2037 101 68 19 chr12 65792805 65793004 -55464526 - Lx LINE L1 -120 6534 6316 4 1086 299 339 42 8 chr12 65793109 65793228 -55464302 - B3 SINE B2 -13 203 81 4 1086 1065 76 0 0 chr12 65794469 65794613 -55462917 + (GGGAGA)n Simple_repeat Simple_repeat 2 145 0 4 1086 750 101 0 0 chr12 65794613 65794721 -55462809 + (GAGAA)n Simple_repeat Simple_repeat 1 109 0 4 1086 225 0 0 0 chr12 65795232 65795257 -55462273 + (TTG)n Simple_repeat Simple_repeat 3 27 0 4 1086 564 15 0 0 chr12 65795616 65795681 -55461849 + (TGG)n Simple_repeat Simple_repeat 1 65 0 4 1086 755 197 44 0 chr12 65795681 65795818 -55461712 - B1F2 SINE Alu -5 144 2 4 1086 197 384 43 36 chr12 65795929 65796067 -55461463 + L2a LINE L2 2349 2487 -932 4 1086 617 320 148 28 chr12 65796140 65796761 -55460769 + L2a LINE L2 2472 3160 -266 4 1086 26 30 0 0 chr12 65797202 65797235 -55460295 + AT_rich Low_complexity Low_complexity 1 33 0 4 1087 273 186 0 0 chr12 65798486 65798556 -55458974 + (CCA)n Simple_repeat Simple_repeat 1 70 0 4 1087 299 350 10 10 chr12 65798844 65798942 -55458588 + PB1D10 SINE Alu 2 99 -18 4 1087 267 173 0 0 chr12 65798968 65799020 -55458510 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1087 214 233 44 15 chr12 65799978 65800113 -55457417 + (TA)n Simple_repeat Simple_repeat 1 139 0 4 1087 326 281 78 4 chr12 65800527 65800649 -55456881 - MLT1F2 LTR MaLR 0 654 463 4 1087 2621 193 99 36 chr12 65800640 65801216 -55456314 + RMER20B LTR ERVK 16 627 0 4 1087 334 355 97 67 chr12 65801314 65801613 -55455917 - MLT1F2 LTR MaLR -248 312 5 4 1087 425 293 49 43 chr12 65801668 65801832 -55455698 - MLT1F2-int LTR MaLR -97 1392 1228 4 1087 2400 164 73 94 chr12 65801874 65802451 -55455079 + RMER15 LTR ERVL 4 568 -7 4 1087 1657 313 75 30 chr12 65802532 65803234 -55454296 - MLT1F2-int LTR MaLR -363 1126 393 4 1087 370 305 181 31 chr12 65803245 65803533 -55453997 - MLT1F2-int LTR MaLR -1156 333 3 4 1087 722 310 72 147 chr12 65803542 65804136 -55453394 - MLT1F2 LTR MaLR -9 551 2 4 1087 1020 280 102 63 chr12 65805120 65805981 -55451549 + L1M3 LINE L1 4314 5208 -932 4 1087 300 285 70 84 chr12 65806066 65806211 -55451319 - ORR1D2 LTR MaLR -135 224 71 4 1087 257 381 25 15 chr12 65806339 65806536 -55450994 + L1MB2 LINE L1 5973 6171 0 4 1087 256 268 29 76 chr12 65807499 65807604 -55449926 + LTR78 LTR ERV1 1 100 -1204 4 1087 395 330 17 0 chr12 65808484 65808602 -55448928 + MER45B DNA Tip100 199 318 -722 4 1087 991 283 140 42 chr12 65808699 65809178 -55448352 + MER45B DNA Tip100 515 1040 0 4 1087 28 48 0 0 chr12 65809317 65809359 -55448171 + AT_rich Low_complexity Low_complexity 1 42 0 4 1087 2398 268 109 33 chr12 65809362 65810758 -55446772 - Lx9 LINE L1 -21 7623 6121 4 1087 2291 215 24 20 chr12 65810780 65811484 -55446046 - Lx9 LINE L1 -1670 5974 5259 4 1087 253 167 0 0 chr12 65811547 65811601 -55445929 - MT2A LTR ERVL 0 533 480 4 1087 405 0 0 0 chr12 65811601 65811646 -55445884 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1087 996 59 0 7 chr12 65811719 65811855 -55445675 - L1_Mus2 LINE L1 0 6566 6432 4 1087 479 205 16 8 chr12 65811861 65811963 -55445567 + MT2A LTR ERVL 94 296 -197 4 1087 666 209 0 0 chr12 65811964 65812093 -55445437 - L1_Rod LINE L1 -102 5745 5617 4 1087 1330 242 171 89 chr12 65812128 65812555 -55444975 - MT2A LTR ERVL -69 464 3 4 1087 284 77 0 0 chr12 65812557 65812596 -55444934 - MERVL_2A-int LTR ERVL 0 5761 5723 4 1087 293 295 112 28 chr12 65812596 65812739 -55444791 - ORR1A3-int LTR MaLR -1307 656 502 4 1087 3147 164 30 13 chr12 65812739 65813337 -55444193 - MERVL_2A-int LTR ERVL -187 5574 4967 4 1087 408 292 47 69 chr12 65813409 65813641 -55443889 + L1_Rod LINE L1 2112 2338 -3509 4 1087 478 331 63 16 chr12 65813643 65813898 -55443632 + LTR78 LTR ERV1 1022 1288 -16 4 1087 935 99 0 30 chr12 65813958 65814093 -55443437 + B1_Mus2 SINE Alu 1 131 -16 4 1087 663 149 40 26 chr12 65814155 65814307 -55443223 + RMER17B LTR ERVK 306 459 -499 4 1087 288 70 0 0 chr12 65814307 65814350 -55443180 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1087 1744 161 103 8 chr12 65815102 65815453 -55442077 + ORR1C2 LTR MaLR 1 384 0 4 1087 617 269 58 0 chr12 65816098 65816269 -55441261 - MTD LTR MaLR -219 200 20 4 1087 1087 116 0 0 chr12 65816520 65816667 -55440863 + B1_Mus2 SINE Alu 1 147 0 4 1087 11816 113 19 8 chr12 65816831 65819579 -55437951 + L1_Mus2 LINE L1 3782 6565 -1 4 1087 5169 91 1 0 chr12 65819580 65820283 -55437247 + L1_Mus2 LINE L1 5861 6564 -2 4 1087 439 17 0 32 chr12 65820285 65820347 -55437183 + (GGA)n Simple_repeat Simple_repeat 3 62 0 4 1087 696 133 16 8 chr12 65820361 65820482 -55437048 + MERVL_2A-int LTR ERVL 1840 1961 -3800 4 1087 26 30 0 0 chr12 65820482 65820515 -55437015 + AT_rich Low_complexity Low_complexity 1 33 0 4 1087 250 163 0 39 chr12 65820568 65820619 -55436911 + MERVL_2A-int LTR ERVL 1953 2001 -3760 4 1087 2697 263 73 92 chr12 65820666 65821945 -55435585 + MTC-int LTR MaLR 5 1258 0 4 1087 1725 175 48 87 chr12 65821945 65822383 -55435147 + MTC LTR MaLR 1 421 0 4 1087 479 332 57 36 chr12 65822582 65822776 -55434754 - B3A SINE B2 0 198 1 4 1087 448 329 41 22 chr12 65822808 65823128 -55434402 - L1MA6 LINE L1 -22 6278 5953 4 1087 2787 258 117 12 chr12 65823124 65824374 -55433156 - Lx6 LINE L1 0 7460 5752 4 1087 3783 64 93 17 chr12 65824414 65824938 -55432592 + LTRIS2 LTR ERV1 1 564 0 5 1087 472 184 141 10 chr12 65825562 65825661 -55431869 + PB1D9 SINE Alu 1 112 -8 5 1087 690 13 0 0 chr12 65825672 65825751 -55431779 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 1087 385 250 175 50 chr12 65825856 65825935 -55431595 + MER5A DNA MER1_type 2 87 -102 5 1087 2374 105 14 36 chr12 65825935 65826300 -55431230 - IAPEY2_LTR LTR ERVK 0 357 1 5 1087 385 250 175 50 chr12 65826300 65826380 -55431150 + MER5A DNA MER1_type 88 181 -8 5 1087 36271 12 0 1 chr12 65826976 65832978 -55424552 + L1Md_T LINE L1 1 5586 -297 5 1087 9022 6 0 0 chr12 65832978 65834018 -55423512 + L1Md_T LINE L1 5587 6582 0 5 1087 15713 3 0 0 chr12 65834018 65835859 -55421671 + L1Md_A LINE L1 3746 5586 -297 5 1087 8995 6 0 0 chr12 65835859 65836855 -55420675 + L1Md_A LINE L1 5587 6582 0 5 1087 23 33 0 0 chr12 65837308 65837338 -55420192 + AT_rich Low_complexity Low_complexity 1 30 0 5 1087 1531 251 14 65 chr12 65837972 65838483 -55419047 + RMER1A Other Other 1 473 -557 5 1087 1892 99 31 22 chr12 65838483 65838802 -55418728 - RLTRETN_Mm LTR ERVK 0 322 1 5 1087 24686 41 2 7 chr12 65838802 65842196 -55415334 - ETnERV-int LTR ERVK 0 4844 1 5 1087 1837 112 31 22 chr12 65842196 65842515 -55415015 - RLTRETN_Mm LTR ERVK 0 322 1 5 1087 971 195 103 4 chr12 65842551 65842783 -55414747 + RMER1B Other Other 807 1061 -5 5 1087 345 308 15 0 chr12 65842899 65843032 -55414498 - Lx6 LINE L1 -12 7448 7314 5 1087 273 378 37 37 chr12 65843842 65844029 -55413501 - MIRb SINE MIR -44 224 38 5 1087 217 310 0 17 chr12 65844703 65844762 -55412768 + ID SINE ID 13 70 -154 5 1087 1154 246 55 25 chr12 65844845 65845211 -55412319 - MTE2a LTR MaLR -2 377 1 5 1087 349 224 57 75 chr12 65845314 65845420 -55412110 + RMER15 LTR ERVL 3 106 -469 5 1087 492 314 155 26 chr12 65845424 65845656 -55411874 + RMER15 LTR ERVL 228 489 -86 5 1087 262 316 13 13 chr12 65847960 65848037 -55409493 - RSINE1 SINE B4 -17 148 72 5 1087 253 330 0 62 chr12 65848038 65848135 -55409395 - RSINE1 SINE B4 -70 95 5 5 1087 298 303 0 11 chr12 65848723 65848813 -55408717 + Tigger16b DNA Tigger 232 320 -17 5 1087 295 339 73 16 chr12 65848823 65849015 -55408515 - Tigger14a DNA MER2_type -57 267 65 5 1087 486 0 0 0 chr12 65849116 65849170 -55408360 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1087 3037 44 42 47 chr12 65849693 65850097 -55407433 + L1_Mus2 LINE L1 6162 6563 -3 5 1087 744 304 93 67 chr12 65850230 65850586 -55406944 - MLT1A0 LTR MaLR 0 374 10 5 1087 1023 156 0 0 chr12 65850600 65850779 -55406751 + GA-rich Low_complexity Low_complexity 2 180 0 5 1087 424 320 0 0 chr12 65852453 65852553 -55404977 + PB1D7 SINE Alu 18 117 -3 5 1087 242 258 214 48 chr12 65852553 65852575 -55404955 + B4A SINE B4 103 245 -47 5 1087 203 354 60 33 chr12 65852582 65852725 -55404805 - MIRc SINE MIR -29 179 33 5 1087 2303 244 77 138 chr12 65853297 65854702 -55402828 - RMER1A Other Other -1 1029 15 5 1087 596 263 180 4 chr12 65855552 65855785 -55401745 + B4A SINE B4 1 274 -18 5 1087 984 305 32 11 chr12 65855840 65856211 -55401319 - MTEa LTR MaLR 0 379 1 5 1087 480 93 0 0 chr12 65856794 65856869 -55400661 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1087 538 193 8 66 chr12 65856989 65857111 -55400419 + PB1D10 SINE Alu 3 117 0 5 1087 6485 65 1 6 chr12 65857251 65858089 -55399441 - L1Md_F2 LINE L1 -1 6581 5748 5 1087 465 314 163 25 chr12 65858404 65858851 -55398679 + L1MEg LINE L1 619 1127 -4957 5 1087 258 354 99 49 chr12 65859413 65859636 -55397894 + MLT1I LTR MaLR 138 371 -40 5 1087 225 319 104 99 chr12 65860189 65860391 -55397139 - L2c LINE L2 -1 3386 3184 5 1087 219 330 96 10 chr12 65860766 65860870 -55396660 + MIRb SINE MIR 120 232 -36 5 1087 302 222 60 0 chr12 65861690 65861807 -55395723 - L1MA9 LINE L1 0 6312 6189 5 1087 714 188 13 74 chr12 65861812 65861961 -55395569 + B1F SINE Alu 9 148 -1 5 1087 370 245 31 0 chr12 65862153 65862251 -55395279 + ORR1D1 LTR MaLR 1 101 -273 5 1087 1232 100 33 0 chr12 65862251 65862431 -55395099 + B2_Mm2 SINE B2 2 187 -8 5 1087 7148 124 11 3 chr12 65862431 65864392 -55393138 - L1_Mus3 LINE L1 -7 6631 4659 5 1087 219 69 0 0 chr12 65864392 65864421 -55393109 + (TTA)n Simple_repeat Simple_repeat 1 29 0 5 1087 6853 155 18 1 chr12 65864421 65864438 -55393092 - L1_Mus3 LINE L1 -1225 4658 4635 5 1087 26801 91 95 22 chr12 65864432 65870026 -55387504 - L1_Mus1 LINE L1 -2 6568 549 5 1087 396 292 15 15 chr12 65870068 65870257 -55387273 - L1VL1 LINE L1 -6022 400 87 5 1087 474 18 0 0 chr12 65870370 65870425 -55387105 + (GGA)n Simple_repeat Simple_repeat 3 57 0 5 1087 734 244 94 27 chr12 65870430 65870658 -55386872 + MLT2B1 LTR ERVL 259 547 -20 5 1087 235 381 49 21 chr12 65870642 65870784 -55386746 + LTR40b LTR ERVL 317 462 0 5 1087 350 325 48 8 chr12 65871260 65871384 -55386146 - MER94 DNA AcHobo 0 134 6 5 1087 182 65 0 61 chr12 65871760 65871793 -55385737 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 5 1087 216 266 81 92 chr12 65872521 65872608 -55384922 - PB1D10 SINE Alu -8 109 24 5 1087 1734 118 43 23 chr12 65873189 65873494 -55384036 - L1_Mus4 LINE L1 -6 6630 6320 5 1087 642 230 4 149 chr12 65874086 65874341 -55383189 - MT2A LTR ERVL 0 533 316 5 1087 473 207 0 0 chr12 65874349 65874436 -55383094 - MT2A LTR ERVL -445 88 2 5 1087 355 140 0 0 chr12 65874437 65874494 -55383036 - MERVL_2A-int LTR ERVL 0 5761 5705 5 1087 336 195 47 35 chr12 65874495 65874580 -55382950 - ORR1A3-int LTR MaLR -1326 637 552 5 1087 4457 166 40 4 chr12 65874580 65875404 -55382126 - MERVL_2A-int LTR ERVL -144 5617 4764 5 1087 1177 174 66 9 chr12 65875416 65875552 -55381978 - RLTR14 LTR ERV1 0 382 237 5 1087 555 29 0 0 chr12 65875552 65875621 -55381909 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1087 1177 174 66 9 chr12 65875621 65875710 -55381820 - RLTR14 LTR ERV1 -146 236 144 5 1087 4057 185 24 8 chr12 65875717 65876506 -55381024 - MERVL_2A-int LTR ERVL -1102 4659 3858 5 1087 7570 164 114 61 chr12 65876501 65876985 -55380545 - MERVL_2A-int LTR ERVL -3275 2486 1952 5 1087 6766 49 1 5 chr12 65876985 65877826 -55379704 + L1Md_F2 LINE L1 5744 6581 -1 5 1087 7570 164 114 61 chr12 65877826 65877893 -55379637 - MERVL_2A-int LTR ERVL -3810 1951 1951 5 1087 1155 88 0 0 chr12 65877893 65878041 -55379489 - B1_Mus1 SINE Alu 0 148 1 5 1087 7570 170 154 65 chr12 65878041 65879787 -55377743 - MERVL_2A-int LTR ERVL -3810 1951 3 5 1087 897 263 43 89 chr12 65879790 65879972 -55377558 - MT2A LTR ERVL 0 601 420 5 1087 2310 148 166 91 chr12 65879972 65880611 -55376919 - RMER6C LTR ERVK -3 687 1 5 1087 1188 218 105 26 chr12 65880611 65880888 -55376642 - MT2A LTR ERVL -182 419 1 5 1087 415 243 78 0 chr12 65880898 65881001 -55376529 - MTD LTR MaLR 0 419 309 5 1087 3145 157 126 20 chr12 65881190 65881802 -55375728 + RLTR33 LTR ERVK 2 678 0 5 1087 433 305 90 28 chr12 65883006 65883151 -55374379 - RSINE1 SINE B4 -8 157 4 5 1087 868 166 7 0 chr12 65883620 65883765 -55373765 + B1_Mus2 SINE Alu 2 147 0 5 1087 646 304 93 10 chr12 65883787 65883960 -55373570 + B4 SINE B4 82 271 -21 5 1087 432 0 0 0 chr12 65883960 65884008 -55373522 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1087 646 304 93 10 chr12 65884008 65884027 -55373503 + B4 SINE B4 272 289 -3 5 1087 314 241 55 28 chr12 65884042 65884162 -55373368 + L1_Rod LINE L1 5666 5847 -456 5 1087 1747 168 85 6 chr12 65884376 65884742 -55372788 - Lx2B LINE L1 -5 6995 6601 5 1087 3542 155 19 5 chr12 65884734 65885363 -55372167 + Lx2B LINE L1 5973 6610 -390 5 1087 449 309 116 45 chr12 65885371 65885999 -55371531 - L1MD2 LINE L1 -204 6155 5471 5 1087 664 238 37 37 chr12 65886909 65887097 -55370433 - B3A SINE B2 -10 188 1 5 1087 22 35 0 0 chr12 65888693 65888722 -55368808 + AT_rich Low_complexity Low_complexity 1 29 0 5 1087 433 322 20 26 chr12 65888773 65888926 -55368604 + RSINE1 SINE B4 2 153 -12 5 1087 683 12 12 0 chr12 65888935 65889019 -55368511 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 5 1087 459 0 0 0 chr12 65890526 65890577 -55366953 + (TTG)n Simple_repeat Simple_repeat 2 52 0 5 1087 382 268 27 50 chr12 65890577 65890688 -55366842 - B1F SINE Alu -11 106 1 5 1087 306 272 17 21 chr12 65890822 65890972 -55366558 - L1MB8 LINE L1 -10 6174 6031 5 1087 1531 266 2 57 chr12 65891399 65891857 -55365673 + Lx9 LINE L1 6959 7391 -253 5 1087 324 0 0 0 chr12 65891885 65891921 -55365609 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1087 21 36 0 0 chr12 65892025 65892053 -55365477 + AT_rich Low_complexity Low_complexity 1 28 0 5 1087 4089 75 0 0 chr12 65892183 65892714 -55364816 - L1Md_T LINE L1 -1 6581 6051 5 1087 5938 17 0 0 chr12 65892714 65893585 -55363945 + L1Md_T LINE L1 5174 6044 -538 5 1087 681 298 91 39 chr12 65893968 65894254 -55363276 + MER2B DNA MER2_type 1 301 -35 5 1087 678 157 0 0 chr12 65894404 65894525 -55363005 + (TA)n Simple_repeat Simple_repeat 2 122 0 5 1087 387 0 0 0 chr12 65895246 65895289 -55362241 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1087 450 36 0 0 chr12 65895290 65895346 -55362184 + (TTG)n Simple_repeat Simple_repeat 1 56 0 5 1087 306 209 0 107 chr12 65895346 65895421 -55362109 - PB1D9 SINE Alu -12 108 42 5 1087 1699 212 58 8 chr12 65895445 65895844 -55361686 - MTD LTR MaLR 0 419 1 5 1087 480 116 0 69 chr12 65896109 65896211 -55361319 - L1Md_F2 LINE L1 -6 6576 6482 5 1087 296 316 0 81 chr12 65897209 65897333 -55360197 + B3A SINE B2 1 114 -84 5 1087 445 214 12 0 chr12 65897259 65897343 -55360187 - ORR1E LTR MaLR -186 173 89 5 1087 542 265 41 68 chr12 65897696 65897842 -55359688 + MTE2b LTR MaLR 49 190 -189 5 1087 6327 112 17 23 chr12 65897842 65899126 -55358404 + Lx LINE L1 5280 6562 -92 5 1087 6090 96 251 3 chr12 65899126 65900270 -55357260 + L1_Mm LINE L1 4036 5463 -420 5 1087 32908 70 4 12 chr12 65900269 65905208 -55352322 + L1Md_A LINE L1 288 5306 -580 5 1087 2034 51 0 12 chr12 65905208 65905467 -55352063 + L1Md_T LINE L1 6327 6582 0 5 1087 32908 40 1 3 chr12 65905467 65906498 -55351032 + L1Md_A LINE L1 5307 6312 -273 5 1087 1136 41 20 0 chr12 65906496 65906643 -55350887 - L1Md_F2 LINE L1 -740 5842 5693 5 1087 1919 80 25 0 chr12 65906631 65906905 -55350625 - L1_Mur1 LINE L1 -707 5179 4899 5 1087 370 20 0 0 chr12 65907086 65907137 -55350393 + Lx2 LINE L1 6946 6996 -1 5 1087 35 54 0 0 chr12 65907409 65907465 -55350065 + AT_rich Low_complexity Low_complexity 1 56 0 5 1087 22 0 0 0 chr12 65907643 65907665 -55349865 + AT_rich Low_complexity Low_complexity 1 22 0 5 1087 681 263 76 15 chr12 65907665 65907862 -55349668 + B3 SINE B2 1 209 -7 5 1087 180 0 0 0 chr12 65907862 65907882 -55349648 + (ATG)n Simple_repeat Simple_repeat 2 21 0 5 1087 29 70 0 0 chr12 65907885 65907942 -55349588 + AT_rich Low_complexity Low_complexity 1 57 0 5 1087 2417 182 5 19 chr12 65908077 65908496 -55349034 + MTC LTR MaLR 1 413 -8 6 1087 21 36 0 0 chr12 65908644 65908672 -55348858 + AT_rich Low_complexity Low_complexity 1 28 0 6 1087 755 224 122 25 chr12 65908672 65908869 -55348661 - B3 SINE B2 0 216 1 6 1087 661 241 115 21 chr12 65908934 65909125 -55348405 + B3 SINE B2 5 213 -3 6 1087 13285 76 8 13 chr12 65909213 65911031 -55346499 + RLTR22_Mus LTR ERVK 1 1808 0 6 1087 192 40 0 0 chr12 65911462 65911487 -55346043 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1087 789 243 122 73 chr12 65912158 65912619 -55344911 - RMER2 LTR ERV1 -18 549 1 6 1087 410 297 91 30 chr12 65914670 65914802 -55342728 + ID_B1 SINE B4 83 222 -2 6 1087 492 18 0 0 chr12 65915367 65915424 -55342106 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1087 202 240 75 62 chr12 65916002 65916082 -55341448 + L4 LINE RTE 212 292 -1737 6 1087 256 314 110 20 chr12 65916576 65916751 -55340779 - MIR SINE MIR -49 219 26 6 1087 317 34 16 48 chr12 65918103 65918165 -55339365 + (CAAAAA)n Simple_repeat Simple_repeat 1 60 0 6 1087 464 0 18 0 chr12 65919637 65919693 -55337837 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 6 1087 1076 110 0 0 chr12 65920431 65920577 -55336953 - B1_Mus1 SINE Alu -1 147 2 6 1087 420 134 0 0 chr12 65920989 65921071 -55336459 - L1Md_F2 LINE L1 0 6582 6501 6 1087 737 187 165 5 chr12 65921509 65921697 -55335833 - Lx5 LINE L1 0 7050 6833 6 1087 585 362 93 16 chr12 65922332 65922781 -55334749 + HAL1 LINE L1 859 1342 -1165 6 1087 605 152 76 0 chr12 65922806 65922911 -55334619 + B1_Mur4 SINE Alu 28 140 -10 6 1087 295 288 29 9 chr12 65923047 65923152 -55334378 + GA-rich Low_complexity Low_complexity 2 108 0 6 1087 571 312 121 50 chr12 65923159 65923497 -55334033 - ORR1E LTR MaLR 0 370 9 6 1087 306 181 24 24 chr12 65923671 65923756 -55333774 + L1M1 LINE L1 5542 5626 -677 6 1087 849 199 5 101 chr12 65923760 65923967 -55333563 + B3 SINE B2 2 188 -28 6 1087 21 57 0 0 chr12 65924034 65924069 -55333461 + AT_rich Low_complexity Low_complexity 1 35 0 6 1087 258 106 0 0 chr12 65925494 65925541 -55331989 + (ATG)n Simple_repeat Simple_repeat 2 48 0 6 1087 801 245 29 0 chr12 65925558 65925766 -55331764 + B3 SINE B2 3 216 0 6 1087 1654 187 108 8 chr12 65926087 65926448 -55331082 + RLTR1 LTR ERV1 228 624 0 6 1087 222 161 48 16 chr12 65926976 65927039 -55330491 + T-rich Low_complexity Low_complexity 6 70 0 6 1087 315 104 0 0 chr12 65927047 65927095 -55330435 + (CATA)n Simple_repeat Simple_repeat 4 51 0 6 1087 2468 268 21 62 chr12 65927100 65927971 -55329559 + Lx9 LINE L1 6392 7226 -418 6 1087 529 153 24 0 chr12 65927972 65928057 -55329473 + RMER19C LTR ERVK 525 611 0 6 1087 335 212 23 23 chr12 65928092 65928179 -55329351 - Lx7 LINE L1 -338 7358 7272 6 1087 256 301 14 0 chr12 65928471 65928544 -55328986 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1087 207 125 0 0 chr12 65928618 65928658 -55328872 + (TTAAA)n Simple_repeat Simple_repeat 4 43 0 6 135 463 347 14 27 chr12 65929159 65929307 -55328223 + RSINE1 SINE B4 2 147 -18 6 1088 323 363 45 31 chr12 65929921 65930143 -55327387 + MIR SINE MIR 8 232 -30 6 1088 3923 33 0 0 chr12 65930148 65930605 -55326925 + L1Md_F2 LINE L1 6113 6569 -13 6 1088 901 282 121 2 chr12 65930923 65931346 -55326184 - Lx9 LINE L1 -814 6830 6358 6 1088 519 17 0 0 chr12 65931346 65931406 -55326124 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1088 457 312 132 25 chr12 65931489 65932039 -55325491 + Lx9 LINE L1 6678 7397 -247 6 1088 576 303 6 52 chr12 65932250 65932424 -55325106 - B3A SINE B2 -29 169 4 6 1088 616 286 37 21 chr12 65932749 65932938 -55324592 + B3A SINE B2 1 192 -6 6 1088 298 230 37 65 chr12 65933595 65933704 -55323826 + MLT1B LTR MaLR 2 102 -365 6 1088 440 289 44 0 chr12 65933812 65933947 -55323583 + MLT1B LTR MaLR 248 388 -2 6 1088 593 240 80 0 chr12 65934295 65934420 -55323110 + B1_Mur4 SINE Alu 6 140 -10 6 1088 467 17 17 0 chr12 65934426 65934486 -55323044 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 1088 2439 152 30 55 chr12 65934548 65935320 -55322210 + RMER6A LTR ERVK 59 756 0 6 1088 625 247 105 0 chr12 65935370 65935609 -55321921 - L1MB1 LINE L1 -217 5951 5688 6 1088 2003 102 60 35 chr12 65936278 65936625 -55320905 + Lx LINE L1 6210 6565 -89 6 1088 714 24 0 0 chr12 65936884 65936968 -55320562 + (TC)n Simple_repeat Simple_repeat 1 84 0 6 1088 369 294 99 35 chr12 65937024 65937225 -55320305 + Lx8 LINE L1 6683 6907 -566 6 1088 775 146 14 0 chr12 65937811 65937955 -55319575 + GA-rich Low_complexity Low_complexity 2 147 0 6 1088 621 0 0 0 chr12 65937955 65938024 -55319506 + (GAAAA)n Simple_repeat Simple_repeat 1 69 0 6 1088 555 311 84 127 chr12 65938167 65938727 -55318803 + MLT1L LTR MaLR 43 578 -32 6 1088 646 329 146 97 chr12 65939073 65939157 -55318373 + MLT2E LTR ERVL 52 133 -495 6 1088 3851 114 7 9 chr12 65939157 65939725 -55317805 + Lx2 LINE L1 6431 6997 0 6 1088 646 329 146 97 chr12 65939725 65940176 -55317354 + MLT2E LTR ERVL 134 613 -15 6 1088 488 249 286 25 chr12 65941400 65941621 -55315909 - MTD LTR MaLR -53 326 40 6 1088 1561 301 79 118 chr12 65941621 65942773 -55314757 - MTD-int LTR MaLR 0 1580 59 6 1088 629 244 29 136 chr12 65942801 65943043 -55314487 - MTE2a LTR MaLR -8 371 156 6 1088 297 229 12 12 chr12 65943043 65943127 -55314403 + L1_Rod LINE L1 1996 2079 -3768 6 1088 227 152 0 0 chr12 65943127 65943160 -55314370 - RMER15 LTR ERVL 0 575 543 6 1088 1593 219 111 58 chr12 65943168 65943383 -55314147 - RLTR28B LTR ERVL -11 470 219 6 1088 2517 133 44 36 chr12 65943383 65943860 -55313670 - RLTR45 LTR ERVK 0 482 2 6 1088 1593 219 111 58 chr12 65943860 65944075 -55313455 - RLTR28B LTR ERVL -263 218 17 6 1088 2788 158 29 58 chr12 65944117 65944143 -55313387 - RMER15 LTR ERVL -34 541 526 6 1088 3124 63 5 2 chr12 65944143 65944538 -55312992 + MTA_Mm LTR MaLR 1 396 0 6 1088 2788 158 29 58 chr12 65944538 65945068 -55312462 - RMER15 LTR ERVL -50 525 1 6 1088 3002 161 35 8 chr12 65945070 65945209 -55312321 + L1_Rod LINE L1 2079 2232 -3615 6 1088 4754 36 14 7 chr12 65945209 65945796 -55311734 + L1Md_F2 LINE L1 5991 6581 -1 6 1088 279 0 0 0 chr12 65945796 65945827 -55311703 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1088 279 0 0 0 chr12 65945827 65945857 -55311673 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1088 3002 161 35 8 chr12 65945857 65946309 -55311221 + L1_Rod LINE L1 2233 2686 -3161 6 1088 556 263 0 0 chr12 65946313 65946427 -55311103 - B3 SINE B2 -98 118 5 6 1088 305 342 49 22 chr12 65946482 65946667 -55310863 - L1MC4a LINE L1 -20 7862 7673 6 1088 263 204 0 0 chr12 65946668 65946712 -55310818 + MLT1E3 LTR MaLR 3 46 -578 6 1088 197 33 33 0 chr12 65946716 65946746 -55310784 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1088 260 211 26 26 chr12 65946811 65946889 -55310641 - Lx7 LINE L1 0 7696 7619 6 1088 598 236 7 0 chr12 65946960 65947108 -55310422 - Lx7 LINE L1 -314 7382 7234 6 1088 1162 242 65 15 chr12 65947110 65947450 -55310080 + Lx7 LINE L1 6874 7230 -466 6 1088 357 24 0 0 chr12 65947737 65947779 -55309751 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1088 1715 233 119 36 chr12 65948262 65948818 -55308712 + RLTR17 LTR ERVK 1 602 -90 6 1088 225 163 20 20 chr12 65948893 65948943 -55308587 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 1088 773 221 13 0 chr12 65950300 65950449 -55307081 + ORR1D2 LTR MaLR 1 151 -219 6 1088 2121 42 0 75 chr12 65950449 65950561 -55306969 - L1Md_F2 LINE L1 -712 5870 5775 6 1088 3363 43 2 2 chr12 65950561 65950976 -55306554 + L1Md_F2 LINE L1 6168 6582 0 6 1088 2121 42 0 75 chr12 65950976 65951169 -55306361 - L1Md_F2 LINE L1 -808 5774 5588 6 1088 5195 78 1 11 chr12 65951184 65951886 -55305644 + L1Md_F2 LINE L1 5875 6569 -13 6 1088 645 263 40 6 chr12 65951890 65952066 -55305464 + ORR1D2 LTR MaLR 156 337 -33 6 1088 256 197 49 0 chr12 65952105 65952166 -55305364 + ORR1D2 LTR MaLR 307 370 0 6 1088 751 275 69 16 chr12 65952434 65952737 -55304793 + L1MA5 LINE L1 5689 6007 -293 6 1088 1559 214 16 8 chr12 65953817 65954258 -55303272 - Lx2B LINE L1 -2 7056 6516 6 1088 396 230 0 0 chr12 65954312 65954447 -55303083 + GA-rich Low_complexity Low_complexity 2 136 0 6 1088 234 150 0 0 chr12 65954672 65954712 -55302818 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1088 301 333 151 0 chr12 65955437 65955530 -55302000 + PB1D10 SINE Alu 2 108 -9 6 1088 482 358 5 42 chr12 65955648 65955861 -55301669 + B4A SINE B4 85 289 -3 6 1088 456 19 0 0 chr12 65955864 65955917 -55301613 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1088 268 356 59 0 chr12 65955933 65956034 -55301496 + MLT1A1 LTR MaLR 71 177 -231 6 1088 498 232 87 56 chr12 65956988 65957184 -55300346 - CYRA11_Mm Unknown Y-chromosome -244 373 172 6 1088 1095 105 52 6 chr12 65957012 65957185 -55300345 + URR1A DNA MER1_type 46 226 0 6 1088 410 150 256 24 chr12 65957202 65957366 -55300164 - Lx9 LINE L1 -83 7561 7360 6 1088 433 311 80 0 chr12 65957492 65957643 -55299887 + MLT1A0 LTR MaLR 1 163 -202 6 1088 389 355 63 5 chr12 65957927 65958117 -55299413 + MLT1A0 LTR MaLR 165 365 0 6 1088 567 33 73 16 chr12 65959921 65960044 -55297486 + (TTTTG)n Simple_repeat Simple_repeat 2 131 0 6 1088 226 283 49 16 chr12 65960063 65960124 -55297406 + MLT1H2 LTR MaLR 104 166 -323 6 1088 254 288 21 77 chr12 65960805 65960948 -55296582 - RMER16-int LTR ERVK -21 6521 6387 6 1088 2450 284 17 43 chr12 65961142 65961843 -55295687 - RMER16-int LTR ERVK -379 5027 4321 6 1088 3861 117 9 0 chr12 65961843 65962388 -55295142 + Lx2B LINE L1 6441 6990 -10 6 1088 2450 284 17 43 chr12 65962388 65962762 -55294768 - RMER16-int LTR ERVK -1086 4320 3980 6 1088 1552 208 81 21 chr12 65963001 65963162 -55294368 - RMER16-int LTR ERVK -1427 3979 3820 6 1088 387 0 0 0 chr12 65963162 65963205 -55294325 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1088 1552 208 81 21 chr12 65963205 65963465 -55294065 - RMER16-int LTR ERVK -1587 3819 3533 6 1088 657 69 0 0 chr12 65963475 65963562 -55293968 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 6 1088 1078 48 0 0 chr12 65963563 65963689 -55293841 - B1_Mm SINE Alu -19 128 3 6 1088 26 30 0 0 chr12 65963691 65963724 -55293806 + AT_rich Low_complexity Low_complexity 1 33 0 6 1088 250 222 58 23 chr12 65963789 65963960 -55293570 + (TA)n Simple_repeat Simple_repeat 1 177 0 6 1088 2729 135 121 32 chr12 65964067 65964719 -55292811 - RLTR19-int LTR ERVK -2161 3976 3267 6 1088 5584 113 76 46 chr12 65964776 65965418 -55292112 + L1_Mur2 LINE L1 2688 3402 -2475 6 1088 1049 104 21 0 chr12 65965418 65965562 -55291968 + B1_Mm SINE Alu 1 147 0 7 1088 5584 113 76 46 chr12 65965562 65965894 -55291636 + L1_Mur2 LINE L1 3403 3716 -2161 6 1088 8110 45 1 2 chr12 65965894 65966877 -55290653 + L1Md_F2 LINE L1 5588 6569 -13 7 1088 5584 113 76 46 chr12 65966877 65966996 -55290534 + L1_Mur2 LINE L1 3717 3815 -2062 6 1088 1132 189 44 31 chr12 65966997 65967394 -55290136 - RMER16-int LTR ERVK -1540 3866 3625 6 1088 4351 122 24 36 chr12 65967398 65968598 -55288932 + L1Md_F LINE L1 396 1580 -4303 7 1088 1191 69 35 6 chr12 65968600 65968774 -55288756 + L1Md_F2 LINE L1 6402 6580 -2 7 1088 23 0 0 0 chr12 65968774 65968797 -55288733 + AT_rich Low_complexity Low_complexity 1 23 0 7 1088 491 113 165 28 chr12 65968798 65968907 -55288623 - RMER16-int LTR ERVK -1767 3639 3516 6 1088 902 119 33 0 chr12 65968950 65969101 -55288429 - RMER16-int LTR ERVK -1878 3528 3373 6 1088 441 191 97 60 chr12 65969507 65969641 -55287889 + RLTR9A LTR ERVK 79 217 -151 7 1088 2034 82 5 7 chr12 65969649 65969954 -55287576 - L1_Mus2 LINE L1 -141 6497 6151 7 1088 207 0 0 0 chr12 65970050 65970073 -55287457 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1088 1345 122 2 9 chr12 65970144 65970371 -55287159 - L1_Mur2 LINE L1 -1374 4772 4517 7 1088 8316 126 44 3 chr12 65970378 65971737 -55285793 + Lx4A LINE L1 5644 7058 0 7 1088 22 0 0 0 chr12 65971740 65971762 -55285768 + AT_rich Low_complexity Low_complexity 1 22 0 7 1088 297 127 36 18 chr12 65972002 65972058 -55285472 + RMER19C LTR ERVK 451 507 -104 7 1088 725 228 171 29 chr12 65972056 65972300 -55285230 - RMER19B LTR ERVK -282 620 382 7 1088 585 237 134 17 chr12 65972327 65972499 -55285031 + B3 SINE B2 13 204 -12 7 1088 503 351 39 32 chr12 65972582 65972867 -55284663 + B4A SINE B4 2 288 -4 7 1088 243 225 0 0 chr12 65972875 65972946 -55284584 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1088 975 281 89 32 chr12 65973180 65973776 -55283754 + L1MA5 LINE L1 5609 6238 -62 7 1088 22 56 0 0 chr12 65974006 65974042 -55283488 + AT_rich Low_complexity Low_complexity 1 36 0 7 1088 207 0 0 0 chr12 65974246 65974269 -55283261 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1088 334 278 0 43 chr12 65974905 65974999 -55282531 + PB1D10 SINE Alu 28 117 0 7 1088 6300 87 31 4 chr12 65975136 65976875 -55280655 - L1VL2 LINE L1 -1789 1826 37 7 1088 421 327 168 5 chr12 65977313 65977510 -55280020 + MER45B DNA Tip100 1 229 -811 7 1088 696 278 81 29 chr12 65977527 65977777 -55279753 - MTEb-int LTR MaLR -1004 576 302 7 1088 1202 249 55 43 chr12 65978628 65978688 -55278842 - MTEb-int LTR MaLR -1226 354 289 7 1088 450 0 0 0 chr12 65978688 65978738 -55278792 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 7 1088 1202 249 55 43 chr12 65978738 65979025 -55278505 - MTEb-int LTR MaLR -1292 288 4 7 1088 1236 242 50 56 chr12 65979026 65979268 -55278262 - MTEb LTR MaLR 0 379 145 7 1088 2813 40 6 11 chr12 65979268 65979622 -55277908 - L1_Mus1 LINE L1 0 6567 6216 7 1088 1236 242 50 56 chr12 65979622 65979720 -55277810 - MTEb LTR MaLR -235 144 42 7 1088 497 299 125 48 chr12 65979766 65980103 -55277427 + MER45B DNA Tip100 501 863 -177 7 1088 2718 125 8 0 chr12 65980265 65980789 -55276741 - Lx5 LINE L1 -1057 5993 5456 7 1088 390 227 72 0 chr12 65980799 65980896 -55276634 + Lx4B LINE L1 6601 6704 -354 7 1088 1200 196 80 18 chr12 65980888 65981163 -55276367 + Lx5 LINE L1 6759 7050 0 7 1088 289 75 38 0 chr12 65981163 65981216 -55276314 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 7 1088 363 44 0 0 chr12 65982117 65982162 -55275368 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1088 533 357 77 19 chr12 65982866 65982988 -55274542 + MLT1F LTR MaLR 156 278 -270 7 1088 1872 72 18 59 chr12 65982988 65983424 -55274106 + L1_Mus3 LINE L1 6363 6638 0 7 1088 533 357 77 19 chr12 65983424 65983612 -55273918 + MLT1F LTR MaLR 279 484 -64 7 1088 370 252 8 92 chr12 65983933 65984064 -55273466 + PB1 SINE Alu 5 124 -3 7 1088 259 296 99 0 chr12 65984080 65984151 -55273379 + ID4 SINE ID 6 83 0 7 1088 333 83 50 0 chr12 65984323 65984383 -55273147 + L1Md_F2 LINE L1 6519 6581 -1 7 1088 641 245 82 61 chr12 65985314 65985510 -55272020 + ID_B1 SINE B4 2 201 -23 7 1088 564 15 0 0 chr12 65985513 65985578 -55271952 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 1088 270 349 39 23 chr12 65985869 65985998 -55271532 - MER5A DNA MER1_type -3 186 56 7 1088 283 389 0 0 chr12 65986245 65986335 -55271195 - B4 SINE B4 -119 173 84 7 1088 269 169 0 17 chr12 65986382 65986442 -55271088 + CT-rich Low_complexity Low_complexity 2 60 0 7 1088 291 85 0 0 chr12 65986438 65986485 -55271045 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1088 252 100 0 0 chr12 65986485 65986525 -55271005 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1088 709 150 17 5 chr12 65986695 65986834 -55270696 - ORR1C2 LTR MaLR 0 384 188 7 1088 756 250 40 6 chr12 65987014 65987191 -55270339 + 7SLRNA srpRNA srpRNA 17 199 -115 7 1088 485 71 0 14 chr12 65987203 65987274 -55270256 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 7 1088 36915 7 0 1 chr12 65987717 65993719 -55263811 + L1Md_A LINE L1 1 5586 -297 7 1088 9026 4 0 0 chr12 65993719 65994715 -55262815 + L1Md_A LINE L1 5587 6582 0 7 1088 287 321 55 9 chr12 65995144 65995254 -55262276 + MIRb SINE MIR 18 132 -136 7 1088 21 0 0 0 chr12 65995433 65995454 -55262076 + AT_rich Low_complexity Low_complexity 1 21 0 7 1088 1105 276 144 17 chr12 65995668 65996195 -55261335 + Lx7 LINE L1 6710 7303 -393 7 1088 998 144 0 6 chr12 65996258 65996439 -55261091 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1088 180 369 47 59 chr12 65997190 65997360 -55260170 - L2c LINE L2 -254 3133 2966 7 1088 463 341 17 11 chr12 65997736 65997911 -55259619 - MamSINE1 SINE tRNA -59 231 56 7 1088 1217 48 0 0 chr12 65999069 65999215 -55258315 + B1_Mm SINE Alu 1 146 -1 7 1088 24 0 0 0 chr12 65999342 65999366 -55258164 + AT_rich Low_complexity Low_complexity 1 24 0 7 1088 367 340 54 74 chr12 65999386 65999535 -55257995 + MLT1F2 LTR MaLR 253 399 -170 7 1088 236 239 64 21 chr12 65999552 65999646 -55257884 + L1M2 LINE L1 4840 4937 -1206 7 1088 493 218 15 12 chr12 65999643 65999793 -55257737 + Lx9 LINE L1 5779 5965 -1679 7 1088 2014 268 61 28 chr12 66000000 66000218 -55257312 + Lx9 LINE L1 6319 6537 -1107 1 1088 2963 57 10 25 chr12 66000218 66000612 -55256918 + RLTR10 LTR ERVK 1 388 -2 2 1088 2014 274 71 27 chr12 66000612 66001169 -55256361 + Lx9 LINE L1 6396 7028 -616 1 1088 3305 154 58 27 chr12 66001186 66001859 -55255671 + RMER17B LTR ERVK 1 694 -264 3 1088 716 235 143 4 chr12 66001861 66002134 -55255396 + Lx9 LINE L1 7321 7631 -13 1 1088 396 315 120 33 chr12 66002145 66002421 -55255109 + L1M5 LINE L1 2176 2475 -3671 4 1088 351 0 0 0 chr12 66002819 66002858 -55254672 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1088 732 192 0 78 chr12 66002863 66003004 -55254526 - RSINE1 SINE B4 -28 137 8 6 1088 329 302 22 52 chr12 66004372 66004508 -55253022 - MLT1A0 LTR MaLR -3 371 240 7 1088 377 302 8 33 chr12 66004535 66004655 -55252875 - MLT1A0 LTR MaLR -244 121 5 7 1088 1354 177 90 21 chr12 66004758 66005046 -55252484 + Lx5 LINE L1 6736 7043 -7 8 1088 4490 87 31 0 chr12 66005048 66005666 -55251864 + L1_Mus2 LINE L1 5929 6565 -1 9 1088 986 323 94 39 chr12 66006260 66006451 -55251079 - MLT1F2 LTR MaLR -122 438 253 1 1088 625 245 27 20 chr12 66006451 66006597 -55250933 + RSINE1 SINE B4 2 148 -17 1 1088 986 323 94 39 chr12 66006597 66006820 -55250710 - MLT1F2 LTR MaLR -308 252 1 1 1088 387 0 0 0 chr12 66007346 66007389 -55250141 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 1 1088 3045 65 7 39 chr12 66007521 66007937 -55249593 + MTB_Mm LTR MaLR 5 407 0 1 1088 426 252 53 18 chr12 66007937 66007952 -55249578 - PB1D10 SINE Alu 0 117 103 1 1088 2757 124 33 46 chr12 66007952 66008433 -55249097 + MT2C_Mm LTR ERVL 1 475 0 1 1088 426 252 53 18 chr12 66008433 66008530 -55249000 - PB1D10 SINE Alu -15 102 1 1 1088 581 319 72 19 chr12 66009161 66009426 -55248104 + LTR83 LTR ERVL 122 400 -380 1 1088 599 242 42 52 chr12 66009627 66009784 -55247746 + L1MA5 LINE L1 6089 6252 -48 1 1088 4084 57 4 6 chr12 66009784 66010300 -55247230 + L1Md_F2 LINE L1 6068 6582 0 1 1088 599 242 42 52 chr12 66010300 66010355 -55247175 + L1MA5 LINE L1 6253 6299 -1 1 1088 954 291 60 6 chr12 66010396 66010714 -55246816 + Lx5 LINE L1 6699 7033 -17 1 1088 674 162 0 6 chr12 66010849 66011029 -55246501 + CT-rich Low_complexity Low_complexity 2 180 0 2 1088 387 0 0 0 chr12 66011029 66011072 -55246458 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1088 825 260 50 5 chr12 66011246 66011447 -55246083 - B3 SINE B2 -6 210 1 2 1088 316 316 86 43 chr12 66011459 66011598 -55245932 + LTR83 LTR ERVL 634 778 -2 1 1088 1168 232 60 93 chr12 66013802 66014168 -55243362 + MTE2a LTR MaLR 11 364 -15 2 1088 516 259 112 50 chr12 66015038 66015217 -55242313 + RMER15 LTR ERVL 299 488 -87 2 1088 25 0 0 0 chr12 66015644 66015669 -55241861 + AT_rich Low_complexity Low_complexity 1 25 0 2 1088 644 311 93 27 chr12 66016905 66017421 -55240109 + L1ME2 LINE L1 5490 6039 -125 2 1088 180 0 0 0 chr12 66017913 66017933 -55239597 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1088 268 305 6 17 chr12 66018980 66019160 -55238370 + (CGG)n Simple_repeat Simple_repeat 3 180 0 2 1088 23 33 0 0 chr12 66021026 66021056 -55236474 + AT_rich Low_complexity Low_complexity 1 30 0 2 1088 999 243 0 5 chr12 66021253 66021460 -55236070 - B3 SINE B2 -9 207 2 3 1088 284 287 18 114 chr12 66021522 66021636 -55235894 - RSINE1 SINE B4 -1 164 62 3 1088 362 359 3 0 chr12 66023074 66023184 -55234346 + B1F SINE Alu 2 113 -36 3 1088 289 305 37 0 chr12 66024747 66024829 -55232701 + B1F SINE Alu 48 132 -17 3 1088 207 0 0 0 chr12 66024833 66024856 -55232674 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1088 217 0 61 0 chr12 66025870 66025903 -55231627 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1088 256 61 44 22 chr12 66026910 66026955 -55230575 + MIRc SINE MIR 156 197 -71 3 1088 188 143 24 0 chr12 66027507 66027549 -55229981 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1088 252 247 14 0 chr12 66027618 66027691 -55229839 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1088 223 77 51 0 chr12 66028136 66028175 -55229355 - B3A SINE B2 -157 41 1 3 1088 5573 169 7 38 chr12 66028615 66030378 -55227152 + Lx2B LINE L1 5300 6946 -62 4 1088 768 77 0 0 chr12 66030436 66030540 -55226990 + (GGGAGA)n Simple_repeat Simple_repeat 6 109 0 4 1088 1694 16 0 0 chr12 66030700 66030890 -55226640 - B2_Mm1a SINE B2 -3 190 1 4 1088 1468 240 94 13 chr12 66031380 66031836 -55225694 - Lx6 LINE L1 -9 7451 6959 4 1088 22 0 0 0 chr12 66031961 66031983 -55225547 + AT_rich Low_complexity Low_complexity 1 22 0 4 1088 637 292 126 29 chr12 66032764 66033215 -55224315 - L1MA9 LINE L1 -217 6095 5601 4 1088 301 268 156 67 chr12 66033222 66033402 -55224128 - B3A SINE B2 0 198 3 4 1088 255 79 0 0 chr12 66033415 66033453 -55224077 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 1088 537 245 177 13 chr12 66033669 66034185 -55223345 - L1MA9 LINE L1 -716 5584 4967 4 1088 409 309 62 31 chr12 66034271 66034401 -55223129 - B4 SINE B4 -156 136 3 4 1088 241 243 141 48 chr12 66034451 66034603 -55222927 - L1MA9 LINE L1 -1220 4926 4758 4 1088 848 203 123 33 chr12 66034632 66034998 -55222532 - L1MA9 LINE L1 -1487 4656 4258 4 1088 650 212 90 15 chr12 66035037 66035238 -55222292 + MER99 DNA hAT? 30 245 -586 4 1088 1156 223 19 30 chr12 66035359 66035627 -55221903 - RLTR20A2 LTR ERVK -12 566 302 5 1088 272 91 0 64 chr12 66035626 66035673 -55221857 - RLTR20A2 LTR ERVK -532 46 3 5 1088 1001 297 58 32 chr12 66035825 66036528 -55221002 - Lx6 LINE L1 -1793 5903 5180 4 1088 180 0 0 0 chr12 66036740 66036760 -55220770 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 5 1088 436 148 37 9 chr12 66036767 66036795 -55220735 + polypyrimidine Low_complexity Low_complexity 86 113 0 5 1088 1193 101 6 0 chr12 66036795 66036974 -55220556 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1088 436 148 37 9 chr12 66036974 66037054 -55220476 + CT-rich Low_complexity Low_complexity 2 85 0 5 1088 627 184 79 29 chr12 66037482 66037622 -55219908 + B1_Mur2 SINE Alu 3 149 0 5 1088 803 247 112 67 chr12 66037762 66038092 -55219438 + Lx7 LINE L1 7063 7407 -289 5 1088 848 198 143 0 chr12 66038614 66038796 -55218734 - B3 SINE B2 -8 208 1 5 1088 355 313 0 25 chr12 66039105 66039223 -55218307 + GA-rich Low_complexity Low_complexity 2 116 0 5 1088 1505 50 16 0 chr12 66039578 66039760 -55217770 + B2_Mm2 SINE B2 1 185 -10 6 1088 514 230 130 6 chr12 66040943 66041105 -55216425 - B3A SINE B2 -3 195 14 6 1088 262 160 37 22 chr12 66041719 66041853 -55215677 + (TA)n Simple_repeat Simple_repeat 2 137 0 6 1088 180 0 0 0 chr12 66044610 66044630 -55212900 + (GAAAA)n Simple_repeat Simple_repeat 4 23 0 6 1088 180 0 0 0 chr12 66044786 66044806 -55212724 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1088 234 154 0 0 chr12 66044857 66044896 -55212634 - L1MA6 LINE L1 -15 6285 6247 6 1088 462 234 47 0 chr12 66045760 66045867 -55211663 + B1_Mur2 SINE Alu 1 112 -37 6 1088 2388 78 6 0 chr12 66046268 66046603 -55210927 - L1_Mus3 LINE L1 -272 6366 6030 6 1088 1862 85 11 25 chr12 66046604 66046882 -55210648 + L1_Mus3 LINE L1 6364 6637 -1 6 1088 320 198 6 64 chr12 66047154 66047327 -55210203 + (TATG)n Simple_repeat Simple_repeat 4 166 0 6 1088 477 50 0 0 chr12 66047382 66047442 -55210088 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1088 186 276 0 0 chr12 66047553 66047611 -55209919 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 1088 434 241 24 28 chr12 66049208 66049373 -55208157 + L1M2 LINE L1 1495 1662 -2252 7 1088 1237 108 6 6 chr12 66049389 66049566 -55207964 + B2_Mm2 SINE B2 1 177 -18 7 1088 700 289 81 13 chr12 66049785 66050148 -55207382 + L1M2 LINE L1 4764 5177 -703 7 1088 279 0 0 0 chr12 66050148 66050179 -55207351 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1088 343 300 183 16 chr12 66050179 66050379 -55207151 + L1M2 LINE L1 5178 5419 -461 7 1088 277 288 25 8 chr12 66050420 66050579 -55206951 + L1M2 LINE L1 5548 5708 -448 7 1088 237 266 62 15 chr12 66050680 66050745 -55206785 + RSINE1 SINE B4 85 152 -13 7 1088 234 250 162 0 chr12 66050904 66050972 -55206558 + ID4_ SINE ID 5 83 0 7 1088 268 297 20 90 chr12 66051871 66051971 -55205559 - RSINE1 SINE B4 -68 97 5 7 1088 23 0 0 0 chr12 66051976 66051999 -55205531 + AT_rich Low_complexity Low_complexity 1 23 0 7 1088 448 299 106 33 chr12 66052835 66053164 -55204366 + L1M5 LINE L1 5357 5709 -531 7 1088 318 337 112 6 chr12 66053223 66053393 -55204137 + L1ME3A LINE L1 5605 5792 -387 8 1088 328 291 57 0 chr12 66053417 66053575 -55203955 + L1ME3A LINE L1 5873 6039 -134 8 1088 596 266 34 20 chr12 66054303 66054449 -55203081 - B1F1 SINE Alu 0 149 2 8 1088 233 335 62 26 chr12 66054974 66055167 -55202363 + L2 LINE L2 1958 2157 -1262 8 1088 762 147 0 0 chr12 66055245 66055374 -55202156 + (GAAA)n Simple_repeat Simple_repeat 2 130 0 8 1088 278 329 12 0 chr12 66055499 66055581 -55201949 + L2 LINE L2 2410 2492 -927 8 1088 430 245 108 106 chr12 66055729 66055890 -55201640 - B3 SINE B2 -11 187 15 8 1088 180 0 0 0 chr12 66056053 66056073 -55201457 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 1088 665 304 32 9 chr12 66057044 66057263 -55200267 + MER58A DNA MER1_type 1 224 0 8 1088 203 146 24 0 chr12 66057512 66057553 -55199977 + GA-rich Low_complexity Low_complexity 1 42 0 8 1088 844 156 6 58 chr12 66060109 66060265 -55197265 - B1_Mus1 SINE Alu 0 148 1 8 1089 311 333 74 25 chr12 66060399 66060562 -55196968 + L3 LINE CR1 3882 4052 -437 8 1089 272 254 0 0 chr12 66060676 66060735 -55196795 + MIR SINE MIR 170 228 -34 9 1089 193 378 62 9 chr12 66060931 66061043 -55196487 + MIR SINE MIR 18 135 -127 9 1089 447 238 10 19 chr12 66061770 66061873 -55195657 + PB1D7 SINE Alu 2 103 -17 9 1089 215 103 26 0 chr12 66062856 66062895 -55194635 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 9 1089 21 89 0 0 chr12 66062958 66063014 -55194516 + AT_rich Low_complexity Low_complexity 1 56 0 9 1089 247 295 188 43 chr12 66063105 66063222 -55194308 + MIRb SINE MIR 119 252 -16 9 1089 868 134 0 0 chr12 66063651 66063778 -55193752 + B1_Mus1 SINE Alu 22 148 0 9 1089 24 0 0 0 chr12 66063900 66063924 -55193606 + AT_rich Low_complexity Low_complexity 1 24 0 9 1089 329 301 45 80 chr12 66064250 66064449 -55193081 + MamRep605 Unknown Unknown 452 643 -233 9 1089 250 173 111 37 chr12 66064577 66064631 -55192899 - ID4 SINE ID -23 60 3 9 1089 257 300 12 12 chr12 66064819 66064900 -55192630 + ID4 SINE ID 3 83 0 1 1089 25 75 0 0 chr12 66065023 66065076 -55192454 + AT_rich Low_complexity Low_complexity 1 53 0 1 1089 817 167 7 0 chr12 66065170 66065308 -55192222 + B1_Mus2 SINE Alu 1 139 -8 1 1089 198 0 0 0 chr12 66065309 66065331 -55192199 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1089 412 294 22 0 chr12 66065490 66065582 -55191948 + PB1D10 SINE Alu 1 94 -23 1 1089 439 318 231 30 chr12 66069429 66069810 -55187720 - L1MC1 LINE L1 -1 8041 7579 1 1089 246 32 0 0 chr12 66069810 66069841 -55187689 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1089 439 318 231 30 chr12 66069841 66070227 -55187303 - L1MC1 LINE L1 -464 7578 7121 1 1089 420 82 0 0 chr12 66070329 66070390 -55187140 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1089 490 246 35 48 chr12 66070400 66070545 -55186985 - B3A SINE B2 -55 143 1 1 1089 814 204 56 50 chr12 66070582 66070956 -55186574 - Lx7 LINE L1 0 7696 7286 1 1089 469 252 146 64 chr12 66070966 66071246 -55186284 - L1MC1 LINE L1 -1040 7002 6700 1 1089 1246 20 0 0 chr12 66071288 66071434 -55186096 - B1_Mm SINE Alu 0 147 2 1 1089 577 234 97 0 chr12 66071681 66071805 -55185725 - B1_Mur2 SINE Alu -13 136 1 1 1089 219 204 74 0 chr12 66071863 66071917 -55185613 + ID4_ SINE ID 22 79 -4 1 1089 513 264 47 23 chr12 66071990 66072118 -55185412 - Tigger5 DNA MER2_type 0 2406 2276 1 1089 310 213 191 0 chr12 66072151 66072245 -55185285 - Tigger5 DNA MER2_type -2269 137 26 1 1089 656 213 0 7 chr12 66072558 66072695 -55184835 + ID_B1 SINE B4 84 219 -5 1 1089 31 0 0 0 chr12 66072698 66072729 -55184801 + AT_rich Low_complexity Low_complexity 1 31 0 1 1089 576 287 104 39 chr12 66072982 66073366 -55184164 - L1MC1 LINE L1 -18 6315 5907 1 1089 458 271 42 0 chr12 66073380 66073524 -55184006 - L1MCa LINE L1 -2502 3819 3670 1 1089 1538 238 128 96 chr12 66073552 66073841 -55183689 - L1MCa LINE L1 -2801 3520 3231 1 1089 528 297 28 0 chr12 66073841 66073986 -55183544 - RSINE1 SINE B4 -15 150 2 1 1089 1538 238 128 96 chr12 66073986 66074307 -55183223 - L1MCa LINE L1 -3091 3230 2879 1 1089 354 292 162 73 chr12 66074307 66074566 -55182964 - B4A SINE B4 -9 283 2 1 1089 1538 238 128 96 chr12 66074566 66074936 -55182594 - L1MCa LINE L1 -3443 2878 2503 1 1089 965 211 14 40 chr12 66074936 66075158 -55182372 - B3 SINE B2 0 216 1 1 1089 1538 237 83 101 chr12 66075158 66075353 -55182177 - L1MCa LINE L1 -3819 2502 2327 1 1089 552 266 106 62 chr12 66075353 66075536 -55181994 - B4A SINE B4 -6 286 84 1 1089 264 30 0 0 chr12 66075536 66075569 -55181961 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1089 552 266 106 62 chr12 66075569 66075658 -55181872 - B4A SINE B4 -209 83 2 1 1089 430 236 58 104 chr12 66075658 66075877 -55181653 - L1MCa LINE L1 -4182 2326 2101 1 1089 252 188 33 111 chr12 66075920 66075961 -55181569 - L1MCa LINE L1 -4643 1865 1830 1 1089 889 226 100 0 chr12 66075961 66076151 -55181379 + B3 SINE B2 1 209 -7 1 1089 252 188 33 111 chr12 66076151 66076199 -55181331 - L1MCa LINE L1 -4679 1829 1783 1 1089 546 228 76 89 chr12 66076227 66076622 -55180908 - L1MCa LINE L1 -4707 1801 1412 1 1089 480 238 105 0 chr12 66076625 66076768 -55180762 - RSINE1 SINE B4 -4 161 4 1 1089 252 0 0 0 chr12 66077169 66077197 -55180333 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 1 1089 661 214 49 21 chr12 66078074 66078217 -55179313 + B1_Mur1 SINE Alu 2 148 -1 1 1089 395 377 54 11 chr12 66078538 66078798 -55178732 - L2 LINE L2 -621 2798 2528 1 1089 284 184 0 0 chr12 66078832 66078881 -55178649 - MurSatRep1 Unknown Unknown -1854 283 235 1 1089 385 141 49 52 chr12 66078883 66078965 -55178565 - B1F2 SINE Alu -49 100 20 1 1089 1162 56 0 0 chr12 66079594 66079736 -55177794 - B1_Mus2 SINE Alu -5 142 1 1 1089 363 229 46 111 chr12 66079823 66079931 -55177599 + B1F SINE Alu 1 101 -48 1 1089 2060 144 171 9 chr12 66079924 66080352 -55177178 - RMER20A LTR ERVK -19 497 1 1 1089 356 315 18 26 chr12 66080530 66080644 -55176886 + ID_B1 SINE B4 78 190 -34 1 1089 498 305 152 16 chr12 66080776 66081026 -55176504 + B4A SINE B4 1 284 -8 1 1089 22 35 0 0 chr12 66081932 66081961 -55175569 + AT_rich Low_complexity Low_complexity 1 29 0 1 1089 1166 100 6 0 chr12 66082119 66082279 -55175251 + B2_Mm2 SINE B2 2 162 -33 1 1089 180 0 0 0 chr12 66082279 66082299 -55175231 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1089 21 36 0 0 chr12 66082300 66082328 -55175202 + AT_rich Low_complexity Low_complexity 1 28 0 1 1089 794 182 14 34 chr12 66082538 66082686 -55174844 + B1_Mur3 SINE Alu 2 146 -3 1 1089 240 338 0 29 chr12 66083000 66083070 -55174460 + ID4 SINE ID 2 69 -14 1 1089 477 122 0 0 chr12 66084200 66084274 -55173256 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 1089 631 203 104 8 chr12 66084670 66084804 -55172726 + B1_Mur1 SINE Alu 2 148 -1 1 1089 186 43 0 0 chr12 66086173 66086196 -55171334 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1 1089 312 223 184 0 chr12 66086196 66086299 -55171231 - B1F SINE Alu 0 149 28 1 1089 612 253 96 0 chr12 66086520 66086666 -55170864 + RSINE1 SINE B4 6 165 0 1 1089 27 29 0 0 chr12 66086683 66086717 -55170813 + AT_rich Low_complexity Low_complexity 1 34 0 1 1089 487 260 124 16 chr12 66087083 66087212 -55170318 + B1_Mur2 SINE Alu 7 149 0 1 1089 272 339 35 9 chr12 66087735 66087848 -55169682 - MER5B DNA MER1_type -57 121 6 1 1089 304 287 92 0 chr12 66088827 66088914 -55168616 - B1F1 SINE Alu -52 97 3 1 1089 665 239 97 44 chr12 66090190 66090396 -55167134 - ID_B1 SINE B4 0 224 8 1 1089 813 206 200 0 chr12 66090484 66090664 -55166866 - B3 SINE B2 0 216 1 1 1089 380 343 0 21 chr12 66091008 66091148 -55166382 - B1F1 SINE Alu -11 138 2 1 1089 521 55 14 0 chr12 66091422 66091495 -55166035 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1 1089 525 295 0 0 chr12 66091595 66091707 -55165823 - ID_B1 SINE B4 -26 198 87 1 1089 31 0 0 0 chr12 66091895 66091926 -55165604 + AT_rich Low_complexity Low_complexity 1 31 0 1 1089 1075 57 43 0 chr12 66092375 66092516 -55165014 + B1_Mus2 SINE Alu 1 147 0 1 1089 503 282 0 0 chr12 66092938 66093048 -55164482 + PB1D10 SINE Alu 1 110 -7 1 1089 21 57 0 0 chr12 66093417 66093452 -55164078 + AT_rich Low_complexity Low_complexity 1 35 0 1 1089 24 0 0 0 chr12 66093689 66093713 -55163817 + AT_rich Low_complexity Low_complexity 1 24 0 1 1089 28 29 0 0 chr12 66093852 66093887 -55163643 + AT_rich Low_complexity Low_complexity 1 35 0 1 1089 1198 282 102 6 chr12 66094007 66094342 -55163188 - MTEa LTR MaLR -12 367 1 1 1089 1826 248 90 41 chr12 66094345 66094887 -55162643 - MTEa-int LTR MaLR -1 1579 1011 1 1089 656 239 99 149 chr12 66094908 66095271 -55162259 - ORR1D2 LTR MaLR -15 355 11 1 1089 726 307 20 41 chr12 66095257 66095454 -55162076 - MTEa-int LTR MaLR -574 1006 814 1 1089 249 221 0 19 chr12 66095483 66095544 -55161986 - MTEb LTR MaLR -149 230 171 1 1089 1893 191 16 13 chr12 66095719 66096096 -55161434 - ORR1C1 LTR MaLR 0 378 1 1 1089 1081 75 0 13 chr12 66096739 66096750 -55160780 - B1_Mus1 SINE Alu 0 148 139 1 1089 239 0 32 0 chr12 66096750 66096781 -55160749 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1089 1081 75 0 13 chr12 66096781 66096918 -55160612 - B1_Mus1 SINE Alu -10 138 2 1 1089 219 204 0 0 chr12 66096982 66097036 -55160494 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1089 260 320 138 56 chr12 66097044 66097312 -55160218 - B4 SINE B4 -2 290 1 1 1089 501 308 23 15 chr12 66097570 66097702 -55159828 + ID_B1 SINE B4 84 216 -8 1 1089 478 320 20 0 chr12 66098435 66098585 -55158945 + RSINE1 SINE B4 3 155 -10 1 1089 881 273 112 4 chr12 66098758 66099008 -55158522 - B4A SINE B4 -6 286 10 1 1089 254 220 40 0 chr12 66099100 66099150 -55158380 - Lx8 LINE L1 -159 7314 7263 1 1089 503 292 80 7 chr12 66099158 66099296 -55158234 - ID_B1 SINE B4 -7 217 70 1 1089 489 34 0 0 chr12 66099327 66099386 -55158144 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1089 249 33 0 0 chr12 66099386 66099416 -55158114 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1089 3637 107 48 27 chr12 66100407 66100993 -55156537 - Lx3B LINE L1 -3 6970 6373 1 1089 3795 120 46 56 chr12 66100995 66101728 -55155802 - Lx3_Mus LINE L1 0 7009 6284 1 1089 3025 152 13 173 chr12 66101735 66102236 -55155294 - L1_Mur2 LINE L1 -2079 3798 3304 1 1089 1013 68 0 0 chr12 66102236 66102368 -55155162 - B1_Mm SINE Alu 0 147 16 1 1089 3025 152 13 173 chr12 66102368 66102601 -55154929 - L1_Mur2 LINE L1 -2079 3303 3072 1 1089 1165 36 0 0 chr12 66102629 66102767 -55154763 + B1_Mus2 SINE Alu 2 139 -8 1 1089 657 25 0 0 chr12 66103878 66103957 -55153573 + (TCC)n Simple_repeat Simple_repeat 2 80 0 1 1089 263 304 33 0 chr12 66104420 66104512 -55153018 - MER58B DNA MER1_type -6 335 241 1 1089 398 305 9 0 chr12 66104527 66104632 -55152898 + ID_B1 SINE B4 92 197 -27 1 1089 273 343 36 29 chr12 66104632 66104665 -55152865 + B1F2 SINE Alu 11 149 0 1 1089 3365 35 2 0 chr12 66104710 66105105 -55152425 + MTA_Mm LTR MaLR 1 396 0 1 1089 635 241 27 34 chr12 66105113 66105259 -55152271 + B3A SINE B2 3 147 -51 1 1089 763 215 0 31 chr12 66105584 66105747 -55151783 - Lx9 LINE L1 -389 7255 7098 1 1089 248 287 165 0 chr12 66105773 66106034 -55151496 + L1MEg LINE L1 840 1143 -5257 1 1089 413 284 149 67 chr12 66106067 66106335 -55151195 + B4A SINE B4 3 292 0 1 1089 441 273 65 50 chr12 66106417 66106556 -55150974 + RSINE1 SINE B4 25 165 0 1 1089 1097 101 38 0 chr12 66106988 66107147 -55150383 + B2_Mm2 SINE B2 1 165 -30 1 1089 228 122 0 0 chr12 66107201 66107242 -55150288 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1089 329 241 38 127 chr12 66107600 66107757 -55149773 + B1_Mur2 SINE Alu 4 146 -3 1 1089 287 230 3 2 chr12 66108380 66108479 -55149051 + L1M2 LINE L1 2254 2375 -4207 1 1089 350 290 123 7 chr12 66108574 66108720 -55148810 + RSINE1 SINE B4 2 164 -1 1 1089 374 296 119 39 chr12 66108775 66109060 -55148470 + L1MEg LINE L1 1582 1889 -4526 1 1089 291 357 63 0 chr12 66109254 66109380 -55148150 + B1_Mur1 SINE Alu 7 140 -9 1 1089 240 339 110 51 chr12 66109789 66109907 -55147623 - RSINE1 SINE B4 -19 146 22 1 1089 255 270 214 22 chr12 66110002 66110180 -55147350 + CR1_Mam LINE CR1 1459 1670 -534 1 1089 1216 90 0 6 chr12 66110203 66110371 -55147159 + B2_Mm2 SINE B2 2 168 -27 1 1089 533 340 21 13 chr12 66110611 66110849 -55146681 - RLTR15 LTR ERVK -72 287 48 1 1089 297 0 0 0 chr12 66111797 66111830 -55145700 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1089 267 299 60 52 chr12 66112270 66112287 -55145243 + B1F SINE Alu 15 144 0 2 1089 393 279 18 9 chr12 66112287 66112399 -55145131 + ID_B1 SINE B4 110 222 -2 2 1089 1012 207 29 5 chr12 66112634 66112838 -55144692 + B3 SINE B2 7 215 -1 2 1089 1132 86 0 0 chr12 66112914 66113065 -55144465 + B2_Mm2 SINE B2 4 154 -41 2 1089 387 127 0 0 chr12 66113067 66113130 -55144400 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1089 387 0 0 0 chr12 66113563 66113606 -55143924 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1089 317 296 129 50 chr12 66113608 66113747 -55143783 - RSINE1 SINE B4 -14 151 2 2 1089 180 0 0 0 chr12 66114223 66114243 -55143287 + (TTTTTG)n Simple_repeat Simple_repeat 6 25 0 2 1089 1199 34 7 7 chr12 66114243 66114390 -55143140 - B1_Mm SINE Alu 0 147 1 2 1089 1334 102 44 18 chr12 66114405 66114634 -55142896 - Lx3_Mus LINE L1 -8 7001 6767 2 1089 543 242 15 91 chr12 66114678 66114810 -55142720 - RSINE1 SINE B4 0 165 44 2 1089 763 87 0 0 chr12 66114825 66114928 -55142602 - B1_Mus2 SINE Alu 0 147 45 2 1089 302 152 71 57 chr12 66114869 66114939 -55142591 - RLTR25A LTR ERVK -521 582 512 2 1089 2307 137 56 5 chr12 66115124 66115499 -55142031 - MTC LTR MaLR -25 396 3 2 1089 579 29 0 0 chr12 66115507 66115576 -55141954 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 2 1089 449 286 0 0 chr12 66116418 66116523 -55141007 - PB1D9 SINE Alu -15 105 1 2 1089 446 261 0 40 chr12 66116540 66116664 -55140866 + PB1D9 SINE Alu 2 120 0 2 1089 798 318 87 73 chr12 66116714 66117032 -55140498 + MER68 LTR ERVL 32 354 -209 2 1089 640 229 34 14 chr12 66117032 66117178 -55140352 + B1_Mur1 SINE Alu 1 149 0 2 1089 798 318 87 73 chr12 66117178 66117351 -55140179 + MER68 LTR ERVL 355 530 -33 2 1089 409 294 19 117 chr12 66117696 66117850 -55139680 - RSINE1 SINE B4 0 165 27 2 1089 1054 78 0 48 chr12 66117961 66118108 -55139422 + B1_Mus1 SINE Alu 2 141 -7 2 1089 436 140 18 27 chr12 66118110 66118220 -55139310 + GA-rich Low_complexity Low_complexity 4 112 0 2 1089 313 312 122 7 chr12 66118224 66118363 -55139167 + HAL1-3A_ME LINE L1 2285 2439 -419 2 1089 363 250 146 0 chr12 66118478 66118574 -55138956 + B3A SINE B2 1 110 -88 2 1089 27 29 0 0 chr12 66118855 66118889 -55138641 + AT_rich Low_complexity Low_complexity 1 34 0 2 1089 234 0 0 0 chr12 66118950 66118976 -55138554 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1089 1131 70 0 0 chr12 66118979 66119121 -55138409 - B1_Mus2 SINE Alu -5 142 1 2 1089 298 236 159 21 chr12 66119496 66119601 -55137929 + ID_B1 SINE B4 10 127 -165 2 1089 497 113 170 30 chr12 66120723 66120823 -55136707 - B1_Mus2 SINE Alu 0 147 34 2 1089 748 186 57 7 chr12 66121444 66121585 -55135945 - B1_Mur4 SINE Alu 0 150 3 2 1089 22 0 0 0 chr12 66121612 66121634 -55135896 + AT_rich Low_complexity Low_complexity 1 22 0 2 1089 468 0 0 0 chr12 66122252 66122304 -55135226 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 2 1089 1127 43 14 0 chr12 66123712 66123852 -55133678 - B1_Mus1 SINE Alu -5 143 2 2 1089 398 259 205 68 chr12 66124452 66124645 -55132885 - L1MA5A LINE L1 -25 6266 6040 2 1089 1183 27 0 40 chr12 66124645 66124797 -55132733 + B1_Mm SINE Alu 2 147 0 2 1089 398 259 205 68 chr12 66124797 66124813 -55132717 - L1MA5A LINE L1 -252 6039 6034 2 1089 1031 111 0 0 chr12 66124813 66124948 -55132582 + B1_Mus1 SINE Alu 1 135 -13 2 1089 186 71 0 0 chr12 66124948 66124976 -55132554 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1089 445 216 109 30 chr12 66124976 66125232 -55132298 - L1MA5A LINE L1 -258 6033 5735 2 1089 1588 138 161 7 chr12 66125236 66125535 -55131995 - MTC LTR MaLR -9 412 68 2 1089 228 67 0 0 chr12 66125535 66125565 -55131965 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1089 1318 88 17 0 chr12 66125591 66125772 -55131758 - B2_Mm2 SINE B2 -11 184 1 2 1089 404 151 96 0 chr12 66125773 66125846 -55131684 - MTC LTR MaLR -341 80 1 2 1089 283 250 42 42 chr12 66126167 66126238 -55131292 - PB1D10 SINE Alu -40 77 7 2 1089 284 173 12 12 chr12 66126255 66126337 -55131193 - L1MA5A LINE L1 -866 5434 5353 2 1089 488 16 0 16 chr12 66126353 66126415 -55131115 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1089 494 326 39 0 chr12 66126428 66126557 -55130973 - RSINE1 SINE B4 -24 141 8 2 1089 241 104 83 0 chr12 66126665 66126713 -55130817 + L1M2 LINE L1 5869 5920 -392 2 1089 935 90 67 7 chr12 66127142 66127277 -55130253 + B1_Mus2 SINE Alu 2 144 -3 2 1089 703 45 45 0 chr12 66127277 66127389 -55130141 + (GA)n Simple_repeat Simple_repeat 2 118 0 2 1089 565 14 27 0 chr12 66127389 66127463 -55130067 + (GAA)n Simple_repeat Simple_repeat 3 78 0 2 1089 4167 74 28 2 chr12 66127566 66128135 -55129395 + MT2B2 LTR ERVL 1 584 0 2 1089 2886 30 0 3 chr12 66128172 66128510 -55129020 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1089 53054 24 11 7 chr12 66128510 66134956 -55122574 - IAPEz-int LTR ERVK 0 6481 8 2 1089 2886 30 0 3 chr12 66134956 66135294 -55122236 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1089 461 313 149 2 chr12 66135359 66135549 -55121981 - LTR33 LTR ERVL -310 221 3 2 1089 571 157 52 0 chr12 66135549 66135664 -55121866 + URR1B DNA MER1_type 104 224 -1 2 1089 406 333 51 0 chr12 66135822 66135939 -55121591 - ID_B1 SINE B4 -18 206 84 2 1089 207 188 0 40 chr12 66136100 66136150 -55121380 + (CATA)n Simple_repeat Simple_repeat 4 51 0 2 1089 1022 91 14 0 chr12 66136239 66136382 -55121148 - B1_Mus2 SINE Alu -1 146 2 2 1089 1139 123 45 0 chr12 66136530 66136709 -55120821 + B2_Mm2 SINE B2 2 188 -7 2 1089 212 241 17 17 chr12 66137333 66137392 -55120138 + (CGG)n Simple_repeat Simple_repeat 2 60 0 2 1089 210 292 0 0 chr12 66138346 66138394 -55119136 - RSINE1 SINE B4 -116 49 2 2 1089 822 275 15 5 chr12 66140000 66140201 -55117329 - B3 SINE B2 -12 204 2 2 1089 548 244 125 48 chr12 66140225 66140393 -55117137 - B3 SINE B2 -27 189 9 2 1089 490 258 44 22 chr12 66140565 66140700 -55116830 + B1_Mur1 SINE Alu 3 140 -9 2 1089 247 283 33 0 chr12 66140870 66140930 -55116600 + RSINE1 SINE B4 68 129 -36 2 1089 242 221 39 0 chr12 66141028 66141105 -55116425 - L1M3 LINE L1 -882 5258 5179 2 1089 246 299 32 84 chr12 66141115 66141210 -55116320 - PB1D10 SINE Alu 0 117 28 2 1089 621 239 35 7 chr12 66141343 66141486 -55116044 + B3A SINE B2 45 191 -7 2 1089 448 299 81 47 chr12 66141870 66142042 -55115488 + B3A SINE B2 2 179 -19 2 1089 908 163 160 16 chr12 66142443 66142630 -55114900 - URR1B DNA MER1_type 0 225 12 2 1089 467 316 39 62 chr12 66142696 66142875 -55114655 - RMER30 DNA MER1_type -26 176 2 2 1089 214 351 0 17 chr12 66142901 66142959 -55114571 + ID_B1 SINE B4 93 149 -75 2 1089 1133 48 7 0 chr12 66142983 66143128 -55114402 + B1_Mus2 SINE Alu 2 147 0 2 1089 717 285 92 15 chr12 66143145 66143341 -55114189 + B3 SINE B2 1 211 -5 2 1089 749 208 75 6 chr12 66145374 66145534 -55111996 - B3 SINE B2 -44 172 2 2 1089 712 263 100 0 chr12 66145912 66146102 -55111428 + B3 SINE B2 2 210 -6 2 1089 503 307 32 45 chr12 66147043 66147200 -55110330 + B3A SINE B2 44 198 0 2 1089 461 346 69 0 chr12 66147271 66147401 -55110129 + B1_Mur2 SINE Alu 2 140 -9 2 1089 785 233 38 16 chr12 66147477 66147660 -55109870 - B3 SINE B2 -7 209 23 2 1089 22 35 0 0 chr12 66147761 66147790 -55109740 + AT_rich Low_complexity Low_complexity 1 29 0 2 1089 339 330 27 36 chr12 66148139 66148249 -55109281 - RSINE1 SINE B4 -53 112 4 2 1089 463 304 114 44 chr12 66148343 66148615 -55108915 - B4A SINE B4 0 292 2 2 1089 24 0 0 0 chr12 66149315 66149339 -55108191 + AT_rich Low_complexity Low_complexity 1 24 0 2 1089 284 294 17 60 chr12 66149595 66149711 -55107819 - PB1D10 SINE Alu -6 111 1 2 1089 273 294 93 22 chr12 66149960 66150099 -55107431 - B1F1 SINE Alu 0 149 1 2 1089 401 245 45 54 chr12 66150222 66150334 -55107196 - PB1D10 SINE Alu -2 115 5 2 1089 386 234 0 47 chr12 66150258 66150343 -55107187 - ID_B1 SINE B4 -67 157 77 2 1089 207 0 0 0 chr12 66150826 66150849 -55106681 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2 1089 298 214 135 0 chr12 66150921 66151010 -55106520 - Lx8 LINE L1 -224 7249 7149 2 1089 334 254 149 40 chr12 66151268 66151416 -55106114 - B2_Mm2 SINE B2 -30 165 2 2 1089 675 158 44 0 chr12 66151454 66151568 -55105962 - B1_Mus1 SINE Alu 0 148 30 2 1089 441 260 22 30 chr12 66151568 66151589 -55105941 - ID_B1 SINE B4 -2 222 89 2 1089 449 307 0 0 chr12 66151604 66151718 -55105812 + RSINE1 SINE B4 9 122 -43 2 1089 524 277 46 33 chr12 66151801 66151954 -55105576 - B3 SINE B2 -15 201 47 2 1089 1198 42 0 0 chr12 66151977 66152119 -55105411 - B1_Mm SINE Alu -3 144 3 2 1089 186 133 0 0 chr12 66152174 66152204 -55105326 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2 1089 622 195 16 31 chr12 66152208 66152335 -55105195 - B1_Mur1 SINE Alu -1 148 24 2 1089 269 329 38 0 chr12 66152452 66152531 -55104999 - B3 SINE B2 -4 212 131 2 1089 323 167 0 0 chr12 66152595 66152643 -55104887 - B1_Mur4 SINE Alu -96 54 7 2 1089 277 211 17 17 chr12 66152598 66152656 -55104874 - B4A SINE B4 -157 135 78 2 1089 556 160 40 0 chr12 66152904 66153004 -55104526 + PB1D9 SINE Alu 11 114 -6 2 1089 621 171 22 52 chr12 66153169 66153305 -55104225 + B1_Mur3 SINE Alu 5 136 -13 2 1089 337 287 110 46 chr12 66153735 66153954 -55103576 - L2 LINE L2 -1229 2190 1958 2 1089 691 207 14 20 chr12 66154683 66154831 -55102699 + B1_Mur1 SINE Alu 1 147 -2 3 1089 374 318 48 0 chr12 66155330 66155399 -55102131 + B4A SINE B4 15 89 -203 3 1089 295 336 94 0 chr12 66155399 66155527 -55102003 + B1F SINE Alu 3 142 -7 3 1089 355 211 28 0 chr12 66155918 66155989 -55101541 + B1F1 SINE Alu 74 146 -3 3 1089 467 258 152 11 chr12 66156788 66156972 -55100558 - B3 SINE B2 -6 210 1 3 1089 1600 16 21 5 chr12 66157922 66158109 -55099421 - B2_Mm1t SINE B2 -2 191 2 3 1089 765 171 7 54 chr12 66158117 66158265 -55099265 - B1_Mur3 SINE Alu -6 143 3 3 1089 296 387 59 20 chr12 66159015 66159168 -55098362 - RSINE1 SINE B4 0 165 7 3 1089 348 246 43 0 chr12 66159310 66159379 -55098151 - RSINE1 SINE B4 -23 142 71 3 1089 278 226 16 31 chr12 66159452 66159516 -55098014 + ID4_ SINE ID 10 72 -11 3 1089 222 267 22 0 chr12 66160471 66160516 -55097014 - PB1D9 SINE Alu -71 49 4 3 1089 1222 90 11 22 chr12 66161196 66161377 -55096153 + B2_Mm1t SINE B2 1 179 -14 3 1089 318 135 58 0 chr12 66161443 66161495 -55096035 + B2_Mm2 SINE B2 47 101 -94 3 1089 180 0 0 0 chr12 66161504 66161524 -55096006 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1089 249 98 0 0 chr12 66162678 66162719 -55094811 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1089 273 187 187 0 chr12 66164020 66164095 -55093435 + B1_Mus2 SINE Alu 1 89 -58 3 1089 271 195 219 0 chr12 66164847 66164929 -55092601 + B3A SINE B2 1 100 -98 3 1089 1165 62 7 0 chr12 66165190 66165336 -55092194 - B1_Mus2 SINE Alu 0 147 1 3 1089 262 247 204 10 chr12 66165801 66165899 -55091631 - PB1D9 SINE Alu -2 118 2 3 1089 203 273 291 0 chr12 66165904 66166014 -55091516 - MIRb SINE MIR -114 154 13 3 1089 804 92 0 0 chr12 66166049 66166158 -55091372 + B1_Mus1 SINE Alu 40 148 0 3 1089 723 194 8 23 chr12 66166177 66166309 -55091221 + B3 SINE B2 1 130 -86 3 1089 681 225 269 30 chr12 66166347 66166581 -55090949 + ORR1C2 LTR MaLR 93 382 -2 3 1089 391 208 146 24 chr12 66166994 66167117 -55090413 - B1F SINE Alu -11 138 1 3 1089 266 228 86 11 chr12 66167166 66167259 -55090271 + MLT1A1 LTR MaLR 1 100 -308 3 1089 373 228 69 10 chr12 66168181 66168283 -55089247 + B1_Mur1 SINE Alu 19 126 -23 3 1089 1060 108 151 0 chr12 66168748 66168914 -55088616 + B2_Mm2 SINE B2 1 191 -4 3 1089 646 211 0 36 chr12 66168949 66169087 -55088443 - B1_Mur2 SINE Alu -8 141 9 3 1089 249 280 84 21 chr12 66169320 66169415 -55088115 + PB1D10 SINE Alu 15 115 -2 3 1089 325 227 22 43 chr12 66170538 66170550 -55086980 + B4A SINE B4 78 87 -205 3 1089 581 119 246 0 chr12 66170550 66170668 -55086862 + B1_Mus1 SINE Alu 2 148 0 3 1089 26 30 0 0 chr12 66170712 66170745 -55086785 + AT_rich Low_complexity Low_complexity 1 33 0 3 1089 448 270 151 0 chr12 66171109 66171294 -55086236 + ID_B1 SINE B4 1 213 -11 3 1089 442 175 12 0 chr12 66171298 66171378 -55086152 + PB1 SINE Alu 44 124 -3 3 1089 327 212 86 12 chr12 66172007 66172088 -55085442 + RSINE1 SINE B4 47 133 -32 3 1089 297 100 0 0 chr12 66172088 66172138 -55085392 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1089 21 36 0 0 chr12 66172298 66172326 -55085204 + AT_rich Low_complexity Low_complexity 1 28 0 3 1089 198 71 0 0 chr12 66172380 66172408 -55085122 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 1089 236 281 36 79 chr12 66172522 66172661 -55084869 - B4A SINE B4 -120 172 40 3 1089 390 194 168 37 chr12 66172810 66172917 -55084613 - B1F SINE Alu -21 128 8 3 1089 1138 56 7 0 chr12 66173759 66173902 -55083628 + B1_Mus1 SINE Alu 5 148 0 3 1089 223 276 79 30 chr12 66173966 66174067 -55083463 + PB1D10 SINE Alu 6 111 -6 3 1089 265 287 29 19 chr12 66175846 66175949 -55081581 + B1F SINE Alu 43 146 -3 3 1089 373 291 25 8 chr12 66177717 66177835 -55079695 - B1F1 SINE Alu -29 120 1 3 1089 1152 36 0 0 chr12 66177868 66178006 -55079524 - B1_Mm SINE Alu -9 138 1 3 1089 213 298 0 0 chr12 66178366 66178423 -55079107 + CT-rich Low_complexity Low_complexity 2 58 0 3 1089 563 209 155 0 chr12 66178423 66178552 -55078978 - B1_Mur1 SINE Alu 0 149 1 3 1089 1583 112 41 15 chr12 66178580 66178851 -55078679 - MT2C_Mm LTR ERVL -1 474 197 3 1089 225 0 0 0 chr12 66179020 66179045 -55078485 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1089 1011 108 0 0 chr12 66179045 66179184 -55078346 - B1_Mus1 SINE Alu -9 139 1 3 1089 492 117 0 0 chr12 66179422 66179499 -55078031 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1089 315 275 203 26 chr12 66179694 66179847 -55077683 - B3A SINE B2 -16 182 3 3 1089 186 43 0 0 chr12 66180229 66180252 -55077278 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1089 808 200 0 14 chr12 66180255 66180397 -55077133 - B1_Mus2 SINE Alu -6 141 2 3 1089 1045 77 154 6 chr12 66180407 66180576 -55076954 - B2_Mm2 SINE B2 -1 194 1 3 1089 27 0 0 0 chr12 66180619 66180646 -55076884 + AT_rich Low_complexity Low_complexity 1 27 0 3 1089 268 270 94 17 chr12 66180714 66180738 -55076792 - B1F1 SINE Alu 0 149 24 3 1089 281 236 21 43 chr12 66180738 66180831 -55076699 - ID_B1 SINE B4 -29 195 105 3 1089 1225 48 0 20 chr12 66180870 66181020 -55076510 - B1_Mus1 SINE Alu -1 147 1 3 1089 709 149 0 0 chr12 66181508 66181622 -55075908 - B1_Mus1 SINE Alu -14 134 21 3 1089 324 263 13 0 chr12 66181621 66181697 -55075833 - B1F SINE Alu -62 87 11 3 1089 261 0 0 0 chr12 66181806 66181835 -55075695 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1089 1414 76 0 11 chr12 66181835 66182021 -55075509 - B2_Mm2 SINE B2 -11 184 1 3 1089 237 303 26 0 chr12 66182057 66182133 -55075397 - ID4_ SINE ID -5 78 1 3 1089 180 0 0 0 chr12 66182296 66182316 -55075214 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1089 562 168 377 36 chr12 66182320 66182487 -55075043 + URR1A DNA MER1_type 1 224 -2 3 1089 407 259 92 0 chr12 66182569 66182700 -55074830 + MTD LTR MaLR 3 145 -274 3 1089 1128 111 0 0 chr12 66182728 66182899 -55074631 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 3 1089 1210 41 0 7 chr12 66182913 66183060 -55074470 - B1_Mm SINE Alu 0 147 2 3 1089 375 186 126 50 chr12 66183077 66183196 -55074334 + MTD LTR MaLR 278 405 -14 3 1089 450 250 34 25 chr12 66183384 66183503 -55074027 - B1F1 SINE Alu -29 120 1 3 1089 892 145 49 32 chr12 66183604 66183789 -55073741 + B2_Mm2 SINE B2 1 188 -7 3 1089 1148 82 0 0 chr12 66184151 66184298 -55073232 - B1_Mus2 SINE Alu 0 147 1 3 1089 328 233 48 0 chr12 66184444 66184547 -55072983 - PB1 SINE Alu -2 125 18 3 1089 214 175 0 0 chr12 66184722 66184762 -55072768 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 3 1089 635 194 0 15 chr12 66185136 66185267 -55072263 - B3 SINE B2 -86 130 2 3 1089 262 195 0 25 chr12 66185277 66185356 -55072174 - L1MC3 LINE L1 -336 7546 7470 3 1089 768 242 42 23 chr12 66185614 66185830 -55071700 - ID_B1 SINE B4 0 224 5 3 1089 294 206 32 0 chr12 66185948 66186011 -55071519 - L1MC3 LINE L1 -831 6954 6890 3 1089 422 159 6 71 chr12 66186058 66186227 -55071303 + (CACAC)n Simple_repeat Simple_repeat 1 158 0 3 1089 252 301 101 51 chr12 66186818 66187035 -55070495 - B4A SINE B4 -63 229 2 3 1089 1147 82 0 0 chr12 66187093 66187239 -55070291 + B1_Mus2 SINE Alu 2 147 0 3 1089 466 250 65 43 chr12 66187379 66187517 -55070013 + B1F SINE Alu 6 146 -3 3 1089 209 222 16 0 chr12 66187551 66187614 -55069916 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1089 647 252 0 0 chr12 66187614 66187737 -55069793 + B1_Mur2 SINE Alu 15 137 -12 3 1089 702 154 30 32 chr12 66187798 66187947 -55069583 - B1_Mus1 SINE Alu -7 141 1 3 1089 1076 170 45 10 chr12 66188080 66188282 -55069248 - B3 SINE B2 -2 214 6 3 1089 2814 106 37 7 chr12 66188386 66188843 -55068687 - RMER16 LTR ERVK 0 533 63 3 1089 244 263 35 0 chr12 66189052 66189109 -55068421 - PB1 SINE Alu -7 120 62 3 1089 282 284 13 26 chr12 66189627 66189703 -55067827 - PB1D10 SINE Alu -21 96 22 3 1089 628 299 110 20 chr12 66189706 66190006 -55067524 - RLTR18B LTR ERVK 0 512 186 3 1089 252 303 58 52 chr12 66190005 66190179 -55067351 - RLTR18 LTR ERVK -250 366 192 3 1089 530 195 18 0 chr12 66190181 66190294 -55067236 - Lx9 LINE L1 -240 7404 7290 3 1089 482 190 120 0 chr12 66190441 66190541 -55066989 - B1_Mur2 SINE Alu -7 142 31 3 1089 1018 74 107 17 chr12 66190565 66190743 -55066787 - B2_Mm2 SINE B2 -1 194 1 3 1089 294 289 66 149 chr12 66190764 66190992 -55066538 + MER20 DNA MER1_type 7 215 -4 3 1089 472 197 100 23 chr12 66191197 66191327 -55066203 + B1_Mur2 SINE Alu 2 141 -8 3 1090 270 284 11 69 chr12 66191373 66191460 -55066070 + ID4_ SINE ID 2 83 0 3 1090 23 54 0 0 chr12 66191574 66191611 -55065919 + AT_rich Low_complexity Low_complexity 1 37 0 3 1090 198 118 0 0 chr12 66191619 66191653 -55065877 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 3 1090 1225 54 0 0 chr12 66191653 66191801 -55065729 - B1_Mus1 SINE Alu 0 148 1 3 1090 244 315 27 0 chr12 66192306 66192379 -55065151 + RSINE1 SINE B4 20 94 -71 3 1090 207 0 0 0 chr12 66192383 66192406 -55065124 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1090 312 27 0 0 chr12 66192434 66192471 -55065059 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1090 258 32 0 0 chr12 66192499 66192530 -55065000 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1090 423 0 0 0 chr12 66192558 66192605 -55064925 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1090 222 37 0 0 chr12 66192633 66192660 -55064870 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1090 306 0 0 0 chr12 66192690 66192724 -55064806 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1090 279 0 0 0 chr12 66192724 66192754 -55064776 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1090 222 128 0 0 chr12 66192952 66192991 -55064539 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1090 1011 59 89 0 chr12 66192994 66193129 -55064401 - B1_Mm SINE Alu 0 147 1 4 1090 543 249 66 28 chr12 66193585 66193946 -55063584 - Lx7 LINE L1 -6 7690 7246 4 1090 2093 181 166 45 chr12 66193946 66194502 -55063028 - RMER19B LTR ERVK -279 623 1 4 1090 267 280 32 0 chr12 66194803 66194896 -55062634 + PB1 SINE Alu 32 127 0 4 1090 489 258 15 15 chr12 66195297 66195431 -55062099 - ID_B1 SINE B4 -5 219 86 4 1090 636 230 30 35 chr12 66195473 66195671 -55061859 - B3A SINE B2 0 198 2 4 1090 299 210 92 30 chr12 66195724 66195822 -55061708 + B1_Mus2 SINE Alu 2 96 -21 4 1090 642 192 39 0 chr12 66196979 66197109 -55060421 + B1_Mur1 SINE Alu 15 149 0 4 1090 240 35 0 0 chr12 66197426 66197455 -55060075 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1090 727 212 0 8 chr12 66197478 66197611 -55059919 - B3A SINE B2 -65 133 2 4 1090 212 284 86 0 chr12 66197674 66197755 -55059775 - RSINE1 SINE B4 -68 97 10 4 1090 333 268 103 0 chr12 66197790 66197887 -55059643 - PB1D9 SINE Alu -8 112 6 4 1090 433 224 10 10 chr12 66198753 66198852 -55058678 - ID_B1 SINE B4 -3 221 123 4 1090 1238 34 0 14 chr12 66198854 66199002 -55058528 - B1_Mus2 SINE Alu 0 147 2 4 1090 21 57 0 0 chr12 66200121 66200156 -55057374 + AT_rich Low_complexity Low_complexity 1 35 0 4 1090 277 303 115 16 chr12 66201101 66201292 -55056238 - MER67C LTR ERV1 -91 620 411 4 1090 879 172 17 122 chr12 66201606 66201844 -55055686 + B3 SINE B2 4 216 0 4 1090 24 0 0 0 chr12 66203358 66203382 -55054148 + AT_rich Low_complexity Low_complexity 1 24 0 4 1090 277 232 144 21 chr12 66203783 66203880 -55053650 - PB1D10 SINE Alu -6 111 3 4 1090 345 191 8 17 chr12 66203987 66204104 -55053426 + (TG)n Simple_repeat Simple_repeat 2 117 0 4 1090 809 203 48 57 chr12 66204104 66204313 -55053217 - ID_B1 SINE B4 -16 208 2 4 1090 394 248 174 21 chr12 66204557 66204701 -55052829 + B3A SINE B2 9 174 -24 4 1090 844 67 17 0 chr12 66204798 66204917 -55052613 - B1_Mus1 SINE Alu 0 148 28 4 1090 566 260 7 14 chr12 66205025 66205173 -55052357 - B1_Mur1 SINE Alu -1 148 2 4 1090 387 0 0 0 chr12 66205239 66205282 -55052248 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 4 1090 1047 61 0 120 chr12 66205282 66205442 -55052088 - B1_Mus1 SINE Alu -7 141 2 4 1090 306 272 141 0 chr12 66205551 66205643 -55051887 + PB1D7 SINE Alu 9 113 -7 4 1090 901 253 9 18 chr12 66208586 66208811 -55048719 + URR1B DNA MER1_type 3 225 0 4 1090 234 136 0 0 chr12 66209503 66209547 -55047983 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1090 990 46 0 0 chr12 66209550 66209681 -55047849 - B1_Mus2 SINE Alu 0 147 17 4 1090 229 26 53 0 chr12 66209684 66209722 -55047808 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1090 895 292 221 27 chr12 66209764 66210469 -55047061 - MLT1F2-int LTR MaLR -646 843 2 4 1090 248 260 125 0 chr12 66210502 66210598 -55046932 - MLT1F2 LTR MaLR -47 513 406 4 1090 645 287 91 5 chr12 66210691 66210901 -55046629 - B4A SINE B4 -10 282 55 4 1090 261 0 0 0 chr12 66210921 66210950 -55046580 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1090 1436 202 58 3 chr12 66210963 66211310 -55046220 - ORR1D1 LTR MaLR -8 366 1 4 1090 4016 206 102 31 chr12 66211310 66212211 -55045319 - ORR1D1-int LTR MaLR 0 1370 412 4 1090 853 69 110 44 chr12 66212211 66212347 -55045183 + B1_Mus1 SINE Alu 4 148 0 4 1090 4016 206 102 31 chr12 66212347 66212510 -55045020 - ORR1D1-int LTR MaLR -959 411 230 4 1090 996 169 0 39 chr12 66212556 66212759 -55044771 - RLTR18 LTR ERVK -99 517 323 4 1090 536 184 71 8 chr12 66212756 66212882 -55044648 - RLTR18 LTR ERVK -481 135 2 4 1090 456 184 73 29 chr12 66212883 66213055 -55044475 - ORR1D1-int LTR MaLR -1133 237 2 4 1090 315 298 31 24 chr12 66213136 66213159 -55044371 - RSINE1 SINE B4 -35 130 3 4 1090 608 111 4 4 chr12 66213159 66213263 -55044267 - B3 SINE B2 -93 105 2 4 1090 1281 191 136 9 chr12 66213263 66213595 -55043935 - ORR1D1 LTR MaLR 0 374 1 4 1090 288 0 0 0 chr12 66213741 66213773 -55043757 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1090 491 219 93 124 chr12 66213808 66214001 -55043529 - ID_B1 SINE B4 -29 195 9 4 1090 971 230 14 14 chr12 66214287 66214499 -55043031 - B3 SINE B2 0 216 5 4 1090 237 132 0 0 chr12 66214576 66214614 -55042916 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 4 1090 660 241 29 0 chr12 66215038 66215212 -55042318 - B3A SINE B2 -17 181 3 4 1090 719 130 130 0 chr12 66215337 66215460 -55042070 - B1_Mus2 SINE Alu 0 147 9 4 1090 4072 145 20 50 chr12 66215874 66216690 -55040840 - RLTR13C2 LTR ERVK -17 791 1 4 1090 218 269 45 27 chr12 66217473 66217558 -55039972 + (TATATG)n Simple_repeat Simple_repeat 6 93 0 4 1090 195 42 0 0 chr12 66217558 66217582 -55039948 + (TAGG)n Simple_repeat Simple_repeat 1 24 0 4 1090 218 269 45 27 chr12 66217582 66217607 -55039923 + (TATATG)n Simple_repeat Simple_repeat 5 29 0 4 1090 630 71 0 0 chr12 66217614 66217698 -55039832 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 4 1090 674 192 167 6 chr12 66217698 66217866 -55039664 - B3 SINE B2 -21 195 1 4 1090 1221 194 0 5 chr12 66218149 66218361 -55039169 + B3 SINE B2 1 211 -5 4 1090 314 288 0 81 chr12 66218429 66218565 -55038965 - RSINE1 SINE B4 0 165 41 4 1090 1289 20 0 0 chr12 66218774 66218921 -55038609 - B1_Mm SINE Alu 0 147 1 4 1090 226 200 18 35 chr12 66219093 66219150 -55038380 + L1MA5 LINE L1 6222 6277 -23 4 1090 755 214 7 7 chr12 66220881 66221027 -55036503 - B1_Mm SINE Alu 0 147 2 4 1090 21 57 0 0 chr12 66221079 66221114 -55036416 + AT_rich Low_complexity Low_complexity 1 35 0 4 1090 271 325 53 0 chr12 66221148 66221262 -55036268 - B1F SINE Alu -2 147 28 4 1090 351 0 0 0 chr12 66223134 66223173 -55034357 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1090 270 216 0 38 chr12 66223213 66223266 -55034264 - ID_B1 SINE B4 -1 223 173 4 1090 227 256 32 95 chr12 66223246 66223341 -55034189 + B4A SINE B4 162 250 -42 4 1090 238 308 62 0 chr12 66223483 66223548 -55033982 - B1F1 SINE Alu -9 140 72 4 1090 651 167 53 91 chr12 66223525 66223657 -55033873 - B1_Mus1 SINE Alu -22 127 1 4 1090 382 198 18 127 chr12 66223565 66223675 -55033855 - MT2B LTR ERVL -354 247 150 4 1090 1116 95 2 14 chr12 66224016 66224192 -55033338 - B2_Mm2 SINE B2 -17 176 2 4 1090 26 30 0 0 chr12 66224192 66224225 -55033305 + AT_rich Low_complexity Low_complexity 1 33 0 4 1090 727 302 16 16 chr12 66224568 66224750 -55032780 + B3A SINE B2 1 182 -16 4 1090 499 312 30 71 chr12 66224774 66224875 -55032655 + RSINE1 SINE B4 4 104 -61 4 1090 1378 95 5 0 chr12 66224875 66225065 -55032465 + B2_Mm1t SINE B2 2 192 -1 4 1090 499 312 30 71 chr12 66225065 66225132 -55032398 + RSINE1 SINE B4 105 165 0 4 1090 263 333 0 0 chr12 66225170 66225245 -55032285 + ID4_ SINE ID 2 76 -7 4 1090 383 194 0 2 chr12 66225304 66225374 -55032156 + ID4 SINE ID 2 70 -82 4 1090 432 0 0 0 chr12 66227235 66227283 -55030247 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 1090 1216 81 0 0 chr12 66227284 66227445 -55030085 - B2_Mm2 SINE B2 -34 161 1 4 1090 300 27 0 0 chr12 66227846 66227883 -55029647 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1090 341 361 46 9 chr12 66227923 66228032 -55029498 - RSINE1 SINE B4 -30 135 23 4 1090 264 257 87 17 chr12 66228053 66228168 -55029362 - Lx9 LINE L1 -297 7347 7225 4 1090 215 81 54 0 chr12 66228678 66228715 -55028815 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 4 1090 1040 71 50 0 chr12 66228717 66228858 -55028672 - B1_Mus1 SINE Alu 0 148 1 4 1090 896 124 50 0 chr12 66228859 66229020 -55028510 - Lx LINE L1 -1 6653 6485 4 1090 804 218 217 35 chr12 66229083 66229511 -55028019 - Lx9 LINE L1 -16 7628 7123 4 1090 50 42 0 0 chr12 66229515 66229586 -55027944 + AT_rich Low_complexity Low_complexity 1 71 0 4 1090 226 189 19 19 chr12 66229589 66229643 -55027887 + RLTR22_Mur LTR ERVK 1 54 -1794 4 1090 780 120 22 36 chr12 66229621 66229759 -55027771 - RLTR22_Mur LTR ERVK -1712 136 1 4 1090 48 0 0 0 chr12 66229786 66229834 -55027696 + AT_rich Low_complexity Low_complexity 1 48 0 4 1090 394 270 100 27 chr12 66229838 66229987 -55027543 - B3 SINE B2 -16 182 23 4 1090 1218 271 131 28 chr12 66230004 66230578 -55026952 - Lx9 LINE L1 -648 6996 6364 4 1090 297 282 0 23 chr12 66230669 66230756 -55026774 - MTC LTR MaLR -336 85 1 4 1090 317 333 65 39 chr12 66230947 66231100 -55026430 - ID_B1 SINE B4 -48 176 20 4 1090 222 347 0 13 chr12 66231122 66231198 -55026332 - ID4 SINE ID -3 80 6 4 1090 25 65 0 0 chr12 66231512 66231558 -55025972 + AT_rich Low_complexity Low_complexity 1 46 0 4 1090 1557 165 37 24 chr12 66231771 66232069 -55025461 + MTC LTR MaLR 120 421 0 4 1090 364 284 29 0 chr12 66232243 66232345 -55025185 + PB1D10 SINE Alu 10 114 -3 4 1090 282 194 173 111 chr12 66232468 66232630 -55024900 + B3A SINE B2 1 172 -23 4 1090 232 241 0 65 chr12 66233225 66233287 -55024243 - tRNA-Ala-GCY_ tRNA tRNA -5 70 13 4 1090 285 258 106 0 chr12 66233232 66233298 -55024232 - ID SINE ID -151 73 1 4 1090 467 182 135 9 chr12 66233409 66233520 -55024010 - PB1 SINE Alu 0 127 3 4 1090 269 208 18 0 chr12 66233540 66233602 -55023928 + B1_Mur2 SINE Alu 79 141 -6 4 1090 286 239 10 129 chr12 66235428 66235529 -55022001 + MT2B LTR ERVL 167 255 -346 5 1090 645 231 22 0 chr12 66235439 66235573 -55021957 + B1_Mus1 SINE Alu 11 147 -1 5 1090 266 289 81 121 chr12 66235573 66235594 -55021936 + B4 SINE B4 116 246 -46 5 1090 211 329 152 0 chr12 66235704 66235783 -55021747 + MER5A DNA MER1_type 20 110 -79 5 1090 706 83 0 136 chr12 66236088 66236228 -55021302 + B2_Mm2 SINE B2 1 121 -74 5 1090 383 141 111 0 chr12 66236527 66236626 -55020904 + Lx9 LINE L1 7534 7643 -1 5 1090 249 351 7 123 chr12 66236695 66236750 -55020780 - B4 SINE B4 -162 130 2 5 1090 317 318 0 55 chr12 66236750 66236841 -55020689 - ID4 SINE ID -68 84 2 5 1090 1133 55 7 7 chr12 66236920 66237066 -55020464 - B1_Mus2 SINE Alu 0 147 2 5 1090 1076 107 0 0 chr12 66237113 66237262 -55020268 + B2_Mm2 SINE B2 2 150 -45 5 1090 257 94 493 0 chr12 66237309 66237382 -55020148 + B2_Mm2 SINE B2 64 172 -23 5 1090 1711 162 96 0 chr12 66237975 66238309 -55019221 + ORR1C1 LTR MaLR 1 366 -12 5 1090 392 213 30 50 chr12 66238743 66238842 -55018688 - PB1D9 SINE Alu -7 113 17 5 1090 284 218 36 14 chr12 66239141 66239253 -55018277 - B3 SINE B2 -53 163 1 5 1090 469 288 90 8 chr12 66240015 66240148 -55017382 - MER58A DNA MER1_type -44 180 37 5 1090 2781 75 67 0 chr12 66240266 66240641 -55016889 + MTB LTR MaLR 1 400 0 5 1090 2170 148 115 14 chr12 66240781 66241200 -55016330 + RMER6B LTR ERVK 1 461 0 5 1090 1366 76 0 16 chr12 66241967 66242154 -55015376 - B2_Mm2 SINE B2 -11 184 1 5 1090 516 237 126 26 chr12 66242181 66242372 -55015158 - B3 SINE B2 -6 210 1 5 1090 329 254 0 0 chr12 66242448 66242511 -55015019 + RSINE1 SINE B4 4 66 -99 5 1090 416 77 15 0 chr12 66242537 66242602 -55014928 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1090 30 0 0 0 chr12 66242615 66242645 -55014885 + AT_rich Low_complexity Low_complexity 1 30 0 5 1090 407 205 0 0 chr12 66243027 66243105 -55014425 + Lx5 LINE L1 6544 6621 -429 5 1090 1015 211 29 37 chr12 66243113 66243354 -55014176 + Lx5 LINE L1 6812 7050 0 5 1090 237 65 0 0 chr12 66243479 66243510 -55014020 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 5 1090 1306 156 4 22 chr12 66243943 66244173 -55013357 + URR1A DNA MER1_type 1 226 0 5 1090 21 0 0 0 chr12 66244543 66244564 -55012966 + AT_rich Low_complexity Low_complexity 1 21 0 5 1090 1359 89 11 0 chr12 66244731 66244921 -55012609 + B2_Mm1t SINE B2 2 193 0 5 1090 1148 68 0 0 chr12 66245107 66245253 -55012277 + B1_Mus2 SINE Alu 2 147 0 5 1090 322 233 127 64 chr12 66245296 66245406 -55012124 + PB1D10 SINE Alu 1 117 0 5 1090 208 179 0 49 chr12 66246900 66246941 -55010589 + polypurine Low_complexity Low_complexity 3 41 0 5 1090 380 311 90 8 chr12 66246941 66247074 -55010456 + B1_Mur3 SINE Alu 5 148 -1 5 1090 291 254 8 23 chr12 66247268 66247397 -55010133 + CT-rich Low_complexity Low_complexity 4 130 0 5 1090 959 110 0 22 chr12 66247406 66247545 -55009985 - B1_Mus1 SINE Alu -10 138 3 5 1090 1080 211 126 18 chr12 66247817 66248102 -55009428 + Lx4A LINE L1 6743 7058 0 5 1090 393 22 0 0 chr12 66248789 66248835 -55008695 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 1090 891 63 55 8 chr12 66248836 66248964 -55008566 - B2_Mm1t SINE B2 -33 160 27 5 1090 1590 52 0 0 chr12 66248964 66249156 -55008374 - B2_Mm1t SINE B2 0 193 2 5 1090 744 168 168 34 chr12 66249222 66249401 -55008129 - B3 SINE B2 -11 205 3 5 1090 1293 34 0 0 chr12 66249435 66249583 -55007947 + B1_Mus1 SINE Alu 1 148 0 5 1090 915 199 6 11 chr12 66251484 66251662 -55005868 + ORR1D1 LTR MaLR 1 177 -197 5 1090 709 52 0 10 chr12 66251652 66251750 -55005780 - B1_Mus1 SINE Alu -51 97 1 5 1090 345 312 0 44 chr12 66251759 66251873 -55005657 - PB1D10 SINE Alu -7 110 2 5 1090 730 242 19 87 chr12 66252130 66252338 -55005192 - B3A SINE B2 -1 197 4 5 1090 180 111 0 0 chr12 66253885 66253912 -55003618 + (GAGAA)n Simple_repeat Simple_repeat 2 28 0 5 1090 293 202 112 12 chr12 66253926 66254006 -55003524 + ID_B1 SINE B4 133 220 -4 5 1090 355 344 48 8 chr12 66254133 66254259 -55003271 + MER58A DNA MER1_type 42 172 -52 5 1090 24 0 0 0 chr12 66254907 66254931 -55002599 + AT_rich Low_complexity Low_complexity 1 24 0 5 1090 1198 28 7 7 chr12 66255024 66255169 -55002361 - B1_Mus2 SINE Alu -1 146 2 5 1090 233 353 189 30 chr12 66255189 66255554 -55001976 - L2a LINE L2 -34 3392 2970 5 1090 504 323 8 0 chr12 66255934 66256067 -55001463 + B1F2 SINE Alu 3 136 -13 5 1090 382 317 62 0 chr12 66256453 66256598 -55000932 - RSINE1 SINE B4 -10 155 2 5 1090 24 32 0 0 chr12 66256739 66256770 -55000760 + AT_rich Low_complexity Low_complexity 1 31 0 5 1090 585 212 30 22 chr12 66257091 66257226 -55000304 - B1_Mur2 SINE Alu -9 140 5 5 1090 252 208 12 111 chr12 66257327 66257408 -55000122 + ID_B1 SINE B4 151 223 -1 5 1090 434 105 0 30 chr12 66258390 66258485 -54999045 + B1_Mur4 SINE Alu 32 149 -1 5 1090 724 106 0 0 chr12 66258509 66258613 -54998917 - B1_Mm SINE Alu -42 105 2 5 1090 420 236 0 102 chr12 66258513 66258631 -54998899 - MT2B LTR ERVL -345 256 151 5 1090 310 270 88 84 chr12 66258700 66259089 -54998441 - Charlie2b DNA MER1_type -63 2719 2360 5 1090 445 222 178 8 chr12 66259987 66260105 -54997425 - B1_Mur2 SINE Alu -1 148 11 5 1090 180 0 0 0 chr12 66260192 66260212 -54997318 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1090 1599 133 34 220 chr12 66260318 66260790 -54996740 + ORR1C2 LTR MaLR 1 384 0 5 1090 615 89 119 0 chr12 66260924 66261025 -54996505 + B1_Mur4 SINE Alu 22 134 -16 5 1090 715 202 59 13 chr12 66261065 66261247 -54996283 + B3 SINE B2 4 186 -9 5 1090 285 250 206 0 chr12 66261648 66261740 -54995790 - PB1D10 SINE Alu -6 111 1 5 1090 211 283 217 0 chr12 66262142 66262202 -54995328 + PB1D10 SINE Alu 17 89 -28 5 1090 1186 54 7 0 chr12 66263063 66263210 -54994320 + B1_Mus1 SINE Alu 1 148 0 5 1090 216 0 0 0 chr12 66263413 66263437 -54994093 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1090 20947 145 65 49 chr12 66263449 66267495 -54990035 + Lx2 LINE L1 581 4673 -1213 5 1090 406 194 8 127 chr12 66267483 66267601 -54989929 + MT2B LTR ERVL 173 276 -325 5 1090 1006 31 0 23 chr12 66267495 66267619 -54989911 + B1_Mm SINE Alu 17 138 -9 5 1090 286 0 91 0 chr12 66267619 66267663 -54989867 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 5 1090 1006 64 2000 54 chr12 66267663 66267676 -54989854 + B1_Mm SINE Alu 139 146 -1 5 1090 20947 137 47 19 chr12 66267676 66269780 -54987750 + Lx2 LINE L1 4674 6997 0 5 1090 240 297 15 30 chr12 66269913 66269925 -54987605 - ID SINE ID -135 89 25 5 1090 253 259 19 0 chr12 66269925 66269979 -54987551 - ID4_ SINE ID -5 78 24 5 1090 23 0 0 0 chr12 66270308 66270331 -54987199 + AT_rich Low_complexity Low_complexity 1 23 0 5 1090 326 243 72 72 chr12 66270359 66270470 -54987060 - PB1D10 SINE Alu -6 111 1 5 1090 270 0 0 0 chr12 66270832 66270862 -54986668 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 5 1090 1190 96 45 6 chr12 66271170 66271348 -54986182 + B2_Mm2 SINE B2 1 185 -10 5 1090 243 260 68 119 chr12 66271412 66271530 -54986000 + PB1D10 SINE Alu 1 112 -5 5 1090 205 176 0 0 chr12 66271612 66271646 -54985884 + GA-rich Low_complexity Low_complexity 2 35 0 5 1090 405 0 0 0 chr12 66271646 66271691 -54985839 + (CAG)n Simple_repeat Simple_repeat 2 46 0 5 1090 524 197 139 5 chr12 66272572 66272766 -54984764 + Lx9 LINE L1 7423 7642 -2 5 1090 2182 56 75 10 chr12 66272838 66273145 -54984385 - L1_Mus2 LINE L1 0 6566 6240 5 1090 945 46 15 15 chr12 66274051 66274184 -54983346 + B2_Mm2 SINE B2 33 165 -30 5 1090 852 31 121 23 chr12 66274190 66274322 -54983208 + B1_Mm SINE Alu 2 146 -1 5 1090 343 136 214 18 chr12 66274328 66274440 -54983090 + B2_Mm2 SINE B2 58 191 -4 5 1090 286 257 13 13 chr12 66274529 66274604 -54982926 + B1F1 SINE Alu 10 84 -65 5 1090 347 331 29 22 chr12 66275058 66275194 -54982336 + B1F SINE Alu 5 141 -8 5 1090 257 366 53 18 chr12 66275745 66275859 -54981671 - LTR16B1 LTR ERVL -76 404 287 5 1090 369 0 0 0 chr12 66276065 66276106 -54981424 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1090 456 216 81 0 chr12 66276408 66276519 -54981011 - PB1D9 SINE Alu 0 120 1 5 1090 852 196 97 11 chr12 66276536 66276722 -54980808 - B3 SINE B2 -12 204 3 5 1090 1036 201 4 86 chr12 66276805 66277050 -54980480 - URR1B DNA MER1_type 0 225 1 5 1090 185 239 43 0 chr12 66277082 66277128 -54980402 - L4 LINE RTE -142 1887 1840 5 1090 308 162 212 0 chr12 66277338 66277418 -54980112 + ERVL-B4-int LTR ERVL 304 400 -5314 5 1090 410 283 41 32 chr12 66277756 66277934 -54979596 - MLT1B LTR MaLR -156 218 51 5 1090 39 22 0 0 chr12 66278160 66278206 -54979324 + AT_rich Low_complexity Low_complexity 1 46 0 5 1090 302 319 21 56 chr12 66278356 66278508 -54979022 - RSINE1 SINE B4 -146 146 3 5 1090 277 143 0 0 chr12 66278508 66278550 -54978980 - ID_B1 SINE B4 -67 157 116 5 1090 21560 166 108 12 chr12 66278551 66279744 -54977786 - L1_Mur1 LINE L1 -35 5851 4605 5 1090 3388 46 8 0 chr12 66279744 66280137 -54977393 - MTA_Mm LTR MaLR 0 396 1 6 1090 21560 166 108 12 chr12 66280137 66281058 -54976472 - L1_Mur1 LINE L1 -1282 4604 3703 5 1090 1253 47 0 13 chr12 66281058 66281208 -54976322 - B1_Mus1 SINE Alu 0 148 1 6 1090 21560 166 108 12 chr12 66281208 66282833 -54974697 - L1_Mur1 LINE L1 -2184 3702 1691 5 1090 216 0 0 0 chr12 66282833 66282857 -54974673 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1090 1227 62 7 0 chr12 66282857 66283001 -54974529 - B1_Mm SINE Alu -2 145 1 6 1090 21560 166 108 12 chr12 66283001 66283501 -54974029 - L1_Mur1 LINE L1 -4196 1690 1204 5 1090 2888 177 53 2 chr12 66283498 66284040 -54973490 - L1Md_F LINE L1 -5477 1042 473 6 1090 3644 75 9 13 chr12 66284120 66284569 -54972961 - LTRIS5 LTR ERV1 0 447 1 6 1090 1252 69 0 0 chr12 66284648 66284793 -54972737 + B1_Mm SINE Alu 3 147 0 6 1090 546 276 30 7 chr12 66284815 66284950 -54972580 - B1F SINE Alu -11 138 1 6 1090 232 133 0 0 chr12 66284968 66285013 -54972517 - MT2A LTR ERVL -7 526 482 6 1090 334 253 25 0 chr12 66285057 66285136 -54972394 - MT2A LTR ERVL -324 209 129 6 1090 1240 68 0 0 chr12 66285137 66285284 -54972246 + B1_Mus2 SINE Alu 1 147 0 6 1090 189 0 0 0 chr12 66285284 66285305 -54972225 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1090 311 167 0 0 chr12 66285305 66285353 -54972177 - MT2A LTR ERVL -392 141 94 6 1090 7188 197 111 18 chr12 66285392 66287046 -54970484 - MERVL_2A-int LTR ERVL -125 5636 3829 6 1090 1152 200 200 123 chr12 66287046 66287490 -54970040 - MT2A LTR ERVL -71 462 2 6 1090 901 224 12 0 chr12 66287664 66287679 -54969851 - B3A SINE B2 -31 167 153 6 1090 279 0 0 0 chr12 66287679 66287710 -54969820 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1090 914 169 0 0 chr12 66287710 66287859 -54969671 - B3 SINE B2 -46 152 1 6 1090 302 296 151 14 chr12 66287859 66288060 -54969470 - B4A SINE B4 -63 229 1 6 1090 956 272 139 6 chr12 66289280 66289617 -54967913 + MTD LTR MaLR 38 419 0 6 1090 215 208 0 0 chr12 66289641 66289689 -54967841 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 6 1090 332 193 0 0 chr12 66290120 66290177 -54967353 - PB1D10 SINE Alu -11 106 50 6 1090 880 236 214 24 chr12 66290269 66290564 -54966966 + ORR1E LTR MaLR 3 353 -6 6 1090 271 286 0 0 chr12 66291194 66291257 -54966273 - ID_B1 SINE B4 0 224 162 6 1090 263 227 74 74 chr12 66291257 66291289 -54966241 - B1F SINE Alu 0 149 55 6 1090 473 267 8 24 chr12 66291405 66291528 -54966002 - B1F2 SINE Alu 0 149 29 6 1090 374 305 23 8 chr12 66291595 66291724 -54965806 + B1F1 SINE Alu 12 142 -7 6 1090 240 383 0 47 chr12 66291732 66291817 -54965713 + ID4_ SINE ID 1 81 -2 6 1090 466 257 13 73 chr12 66291818 66291969 -54965561 + L1MA10 LINE L1 6124 6265 -69 6 1090 525 273 23 8 chr12 66292144 66292273 -54965257 - RSINE1 SINE B4 0 165 35 6 1090 239 211 17 17 chr12 66292899 66292957 -54964573 - MER5A1 DNA MER1_type -7 159 102 6 1090 1104 97 0 0 chr12 66292957 66293102 -54964428 + B1_Mus1 SINE Alu 2 146 -2 6 1090 180 0 0 0 chr12 66293180 66293200 -54964330 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1090 644 202 9 0 chr12 66293221 66293330 -54964200 + B1_Mur4 SINE Alu 9 118 -32 6 1090 200 59 29 0 chr12 66293330 66293364 -54964166 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 6 1090 1564 73 5 0 chr12 66293609 66293800 -54963730 + B2_Mm1t SINE B2 2 193 0 6 1090 514 331 101 23 chr12 66294245 66294502 -54963028 + B4A SINE B4 1 277 -15 6 1090 289 116 0 80 chr12 66294586 66294661 -54962869 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1090 525 130 0 0 chr12 66294693 66294804 -54962726 + (TCTCTG)n Simple_repeat Simple_repeat 1 111 0 6 1090 1442 95 16 0 chr12 66295991 66296181 -54961349 + B2_Mm2 SINE B2 2 194 -1 6 1090 397 100 0 32 chr12 66296663 66296725 -54960805 + B1_Mus1 SINE Alu 1 60 -88 6 1090 1089 134 0 51 chr12 66296725 66297081 -54960449 + (CAGAGA)n Simple_repeat Simple_repeat 1 337 0 6 1090 577 281 0 0 chr12 66297030 66297208 -54960322 + GA-rich Low_complexity Low_complexity 2 179 0 6 1090 256 178 112 56 chr12 66297221 66297328 -54960202 + RLTR25B LTR ERVK 397 509 -519 6 1090 853 27 0 1 chr12 66297265 66297372 -54960158 + B1_Mus2 SINE Alu 42 142 -5 6 1090 220 27 26 26 chr12 66297372 66297410 -54960120 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1090 556 115 58 0 chr12 66297508 66297595 -54959935 - B3A SINE B2 -102 96 5 6 1090 669 271 9 111 chr12 66298043 66298259 -54959271 - B3A SINE B2 -2 196 3 6 1090 347 285 105 8 chr12 66298734 66298858 -54958672 + MLT2B5 LTR ERVL 180 315 -402 6 1090 1285 270 3 35 chr12 66298751 66299069 -54958461 + MTEa LTR MaLR 72 379 0 6 1090 227 258 65 0 chr12 66299503 66299565 -54957965 + B1F SINE Alu 16 81 -68 6 1090 299 188 6 0 chr12 66299626 66299675 -54957855 + PB1D7 SINE Alu 66 117 -10 6 1090 205 152 0 0 chr12 66299676 66299709 -54957821 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1090 562 199 75 15 chr12 66299779 66299912 -54957618 + B1F SINE Alu 9 149 0 6 1090 1243 68 0 0 chr12 66300174 66300320 -54957210 - B1_Mus2 SINE Alu -1 146 1 6 1090 1237 307 24 19 chr12 66300524 66300949 -54956581 - Lx7 LINE L1 -378 7318 6892 6 1090 1345 222 31 14 chr12 66300949 66301237 -54956293 + ORR1D1 LTR MaLR 36 328 -46 6 1090 1485 189 33 24 chr12 66301245 66301567 -54955963 - ORR1C2 LTR MaLR -14 370 19 6 1090 441 279 76 30 chr12 66301586 66301822 -54955708 + RLTR15 LTR ERVK 45 291 -68 6 1090 344 159 0 92 chr12 66301870 66301946 -54955584 - ORR1C2 LTR MaLR -315 69 1 6 1090 183 42 0 0 chr12 66302654 66302678 -54954852 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1090 243 307 83 38 chr12 66303630 66303762 -54953768 - MIRb SINE MIR -36 232 95 6 1090 288 169 13 25 chr12 66304199 66304278 -54953252 + GA-rich Low_complexity Low_complexity 4 81 0 6 1090 1462 65 38 0 chr12 66304550 66304736 -54952794 + B2_Mm2 SINE B2 3 195 0 6 1090 188 35 35 0 chr12 66306055 66306084 -54951446 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 1090 226 276 0 73 chr12 66306102 66306184 -54951346 - ID_B1 SINE B4 -67 157 82 6 1090 1086 103 0 14 chr12 66306712 66306860 -54950670 - B1_Mus1 SINE Alu 0 148 3 6 1090 496 206 41 0 chr12 66306964 66307061 -54950469 - B1_Mus2 SINE Alu -1 146 46 6 1090 1157 155 51 72 chr12 66307168 66307324 -54950206 - RMER17C LTR ERVK 0 410 269 6 1090 2445 114 130 3 chr12 66307324 66307694 -54949836 - RLTR9B2 LTR ERVK -3 417 1 6 1090 1157 155 51 72 chr12 66307694 66307870 -54949660 - RMER17C LTR ERVK -142 268 85 6 1090 617 203 35 74 chr12 66307872 66308212 -54949318 - RMER17B LTR ERVK -517 441 16 6 1090 1181 90 0 0 chr12 66308591 66308736 -54948794 - B1_Mus1 SINE Alu -2 146 2 6 1090 324 0 0 0 chr12 66308736 66308772 -54948758 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 6 1090 456 157 0 0 chr12 66308784 66308854 -54948676 - B1_Mur4 SINE Alu -79 71 2 6 1090 324 0 0 0 chr12 66308854 66308890 -54948640 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 6 1090 413 269 106 15 chr12 66309094 66309226 -54948304 - B1F SINE Alu -1 148 5 6 1090 2445 115 30 92 chr12 66309518 66310046 -54947484 + RLTR1B LTR ERV1 1 512 0 6 1090 286 275 90 22 chr12 66310214 66310348 -54947182 + MIRc SINE MIR 108 250 -18 6 1090 252 293 0 100 chr12 66311407 66311517 -54946013 + BC1_Mm scRNA scRNA 1 99 -53 6 1090 22 0 0 0 chr12 66311773 66311795 -54945735 + AT_rich Low_complexity Low_complexity 1 22 0 6 1090 303 49 0 0 chr12 66312321 66312362 -54945168 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 6 1090 401 313 66 7 chr12 66312413 66312564 -54944966 - RSINE1 SINE B4 -2 163 4 6 1090 4585 77 14 0 chr12 66312624 66313183 -54944347 - RMER2 LTR ERV1 0 567 1 6 1090 672 217 87 0 chr12 66313340 66313478 -54944052 - B1_Mur4 SINE Alu 0 150 1 6 1090 314 80 0 20 chr12 66313495 66313546 -54943984 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 1090 238 220 83 17 chr12 66313553 66313613 -54943917 - B1_Mm SINE Alu -12 135 72 6 1090 1278 28 7 0 chr12 66313616 66313760 -54943770 + B1_Mus1 SINE Alu 3 147 -1 6 1090 282 162 0 0 chr12 66313761 66313835 -54943695 + A-rich Low_complexity Low_complexity 1 74 0 6 1090 443 219 0 68 chr12 66313839 66313927 -54943603 - PB1D9 SINE Alu -37 83 2 6 1090 294 353 35 0 chr12 66314975 66315091 -54942439 + Tigger5 DNA MER2_type 98 217 -2189 6 1090 1259 54 0 20 chr12 66315114 66315264 -54942266 - B1_Mus2 SINE Alu 0 147 1 6 1090 537 58 0 0 chr12 66315421 66315490 -54942040 - B1_Mus1 SINE Alu -78 70 2 6 1090 253 217 203 0 chr12 66315510 66315579 -54941951 - MTE2a LTR MaLR -292 87 5 6 1090 448 289 157 22 chr12 66316674 66316897 -54940633 + RLTR11A2 LTR ERVK 1 253 -274 6 1090 212 289 29 123 chr12 66317239 66317377 -54940153 - MIRb SINE MIR -137 131 7 6 1090 602 153 9 0 chr12 66318878 66318989 -54938541 + CT-rich Low_complexity Low_complexity 1 112 0 6 1090 694 194 65 0 chr12 66318997 66319121 -54938409 - B1F SINE Alu -17 132 1 6 1090 571 274 0 29 chr12 66319452 66319591 -54937939 - B1F1 SINE Alu -1 148 14 6 1090 1287 55 0 0 chr12 66319720 66319866 -54937664 - B1_Mm SINE Alu -1 146 1 6 1090 736 284 121 20 chr12 66319866 66320262 -54937268 - L1MA6 LINE L1 -49 6251 5814 6 1090 384 231 66 31 chr12 66320274 66320417 -54937113 - MTEa LTR MaLR -39 340 172 6 1090 353 39 0 19 chr12 66320652 66320704 -54936826 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 6 1090 268 305 0 0 chr12 66321386 66321468 -54936062 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1090 736 251 18 6 chr12 66321615 66321779 -54935751 + B3 SINE B2 51 216 0 6 1090 2152 219 34 21 chr12 66321889 66322355 -54935175 - RMER15 LTR ERVL -3 572 101 7 136 243 425 28 0 chr12 66322363 66322504 -54935026 - L4 LINE RTE -702 1327 1183 7 1091 5402 192 116 9 chr12 66322631 66323716 -54933814 + Lx9 LINE L1 6306 7503 -141 7 1091 261 0 0 0 chr12 66323716 66323745 -54933785 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1091 633 153 43 31 chr12 66323745 66323880 -54933650 + Lx9 LINE L1 7504 7643 -1 7 1091 866 284 98 22 chr12 66324188 66324555 -54932975 - MER67D LTR ERV1 -119 395 1 7 1091 21 0 0 0 chr12 66325025 66325046 -54932484 + AT_rich Low_complexity Low_complexity 1 21 0 7 1091 516 220 71 34 chr12 66325160 66325353 -54932177 + Lx4B LINE L1 6758 7049 -9 7 1091 182 37 0 36 chr12 66325424 66325452 -54932078 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1091 881 244 14 36 chr12 66326350 66326571 -54930959 - B3 SINE B2 0 216 1 7 1091 415 210 10 20 chr12 66330138 66330240 -54927290 - Lx4B LINE L1 -4 7054 6954 7 1091 377 170 46 52 chr12 66330349 66330412 -54927118 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1091 3185 48 56 0 chr12 66330412 66330787 -54926743 - MTA_Mm LTR MaLR 0 396 1 7 1091 377 170 46 52 chr12 66330787 66330897 -54926633 + (TA)n Simple_repeat Simple_repeat 2 115 0 7 1091 331 219 34 51 chr12 66330915 66331145 -54926385 + (TATAA)n Simple_repeat Simple_repeat 1 226 0 7 1091 477 0 0 0 chr12 66331178 66331231 -54926299 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1091 883 330 91 55 chr12 66331257 66331818 -54925712 - RMER13A LTR ERVK -97 763 183 7 1091 306 132 0 0 chr12 66331830 66331883 -54925647 + (T)n Simple_repeat Simple_repeat 1 53 0 7 1091 614 157 29 13 chr12 66331894 66332002 -54925528 - B1_Mus2 SINE Alu -5 145 41 7 1091 2312 190 107 32 chr12 66332007 66332503 -54925027 - RMER16 LTR ERVK 0 533 1 7 1091 679 242 80 62 chr12 66332503 66332519 -54925011 + Lx6 LINE L1 6942 6957 -503 7 1091 561 101 0 0 chr12 66332519 66332618 -54924912 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1091 679 242 80 62 chr12 66332618 66332777 -54924753 + Lx6 LINE L1 6958 7120 -340 7 1091 243 0 0 0 chr12 66332785 66332812 -54924718 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1091 266 250 24 36 chr12 66332830 66332913 -54924617 + MT2B LTR ERVL 197 278 -323 7 1091 604 73 0 12 chr12 66332851 66332934 -54924596 + B1_Mus2 SINE Alu 60 141 -6 7 1091 360 0 0 0 chr12 66332949 66332989 -54924541 + (CAA)n Simple_repeat Simple_repeat 2 41 0 7 1091 1170 228 52 0 chr12 66333005 66333273 -54924257 + Lx6 LINE L1 7130 7411 -49 7 1091 664 68 0 0 chr12 66333313 66333401 -54924129 + B1_Mus2 SINE Alu 24 111 -36 7 1091 207 0 0 0 chr12 66333411 66333434 -54924096 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1091 270 0 0 0 chr12 66333450 66333480 -54924050 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 7 1091 241 259 0 147 chr12 66333633 66333648 -54923882 - RSINE1 SINE B4 -99 66 56 7 1091 3693 92 102 2 chr12 66333648 66334159 -54923371 - LTRIS2 LTR ERV1 0 564 3 7 1091 241 259 0 147 chr12 66334159 66334211 -54923319 - RSINE1 SINE B4 -110 55 9 7 1091 1251 229 118 35 chr12 66334366 66334705 -54922825 - ORR1D2 LTR MaLR -3 367 1 7 1091 26 30 0 0 chr12 66336538 66336571 -54920959 + AT_rich Low_complexity Low_complexity 1 33 0 7 1091 301 298 40 77 chr12 66336604 66336842 -54920688 + L1_Mur3 LINE L1 5305 5524 -773 7 1091 1427 251 47 3 chr12 66336861 66337205 -54920325 - Lx9 LINE L1 -880 6764 6406 7 1091 1175 88 0 7 chr12 66337811 66337959 -54919571 - B1_Mus2 SINE Alu 0 147 1 7 1091 194 239 14 0 chr12 66338294 66338365 -54919165 + CT-rich Low_complexity Low_complexity 1 72 0 7 1091 23 0 0 0 chr12 66338776 66338799 -54918731 + AT_rich Low_complexity Low_complexity 1 23 0 7 1091 659 215 107 0 chr12 66339541 66339662 -54917868 + B1_Mur2 SINE Alu 5 138 -11 7 1091 636 228 126 19 chr12 66339963 66340178 -54917352 + MLT1F1 LTR MaLR 323 560 -9 7 1091 395 317 114 10 chr12 66340419 66340620 -54916910 + MIR SINE MIR 32 253 -9 7 1091 486 344 8 43 chr12 66340909 66341143 -54916387 + Tigger5 DNA MER2_type 40 265 -2141 7 1091 292 259 33 100 chr12 66341112 66341232 -54916298 + Tigger5 DNA MER2_type 2294 2405 -1 7 1091 188 368 15 0 chr12 66341447 66341515 -54916015 + L2a LINE L2 3353 3421 -5 7 1091 881 301 26 19 chr12 66341852 66341975 -54915555 + Lx9 LINE L1 6320 6341 -1303 7 1091 803 87 0 8 chr12 66341975 66342102 -54915428 + (CA)n Simple_repeat Simple_repeat 2 127 0 7 1091 881 252 44 22 chr12 66342102 66342307 -54915223 + Lx9 LINE L1 6342 6551 -1093 7 1091 1794 152 58 42 chr12 66343619 66344065 -54913465 + RMER17C LTR ERVK 16 439 -519 7 1091 401 44 0 1 chr12 66346694 66346743 -54910787 + Lx4A LINE L1 6337 6386 -672 7 1091 751 0 0 0 chr12 66346743 66346829 -54910701 + L1Md_T LINE L1 6496 6581 -1 7 1091 4427 134 31 10 chr12 66346856 66347529 -54910001 + Lx4A LINE L1 6372 7058 0 7 1091 1065 271 40 4 chr12 66347549 66347801 -54909729 + B4A SINE B4 28 288 -4 7 1091 783 216 2 5 chr12 66347900 66348061 -54909469 - B3 SINE B2 -54 162 6 7 1091 236 281 87 123 chr12 66348134 66348272 -54909258 - B3A SINE B2 -64 134 2 7 1091 22 0 0 0 chr12 66348626 66348648 -54908882 + AT_rich Low_complexity Low_complexity 1 22 0 7 1091 233 211 0 17 chr12 66349444 66349502 -54908028 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1091 27 0 0 0 chr12 66350312 66350339 -54907191 + AT_rich Low_complexity Low_complexity 1 27 0 7 1091 22 0 0 0 chr12 66351827 66351849 -54905681 + AT_rich Low_complexity Low_complexity 1 22 0 7 1091 651 259 45 80 chr12 66351853 66352054 -54905476 - B3 SINE B2 -19 197 4 7 1091 293 262 62 12 chr12 66352099 66352180 -54905350 - B1F1 SINE Alu -60 89 5 7 1091 1180 221 67 0 chr12 66352188 66352455 -54905075 + MT2A LTR ERVL 169 453 -80 7 1091 251 103 51 0 chr12 66353018 66353057 -54904473 - B3 SINE B2 -175 41 1 7 1091 225 0 0 0 chr12 66353062 66353087 -54904443 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1091 1132 51 66 0 chr12 66353087 66353224 -54904306 - B1_Mus2 SINE Alu 0 147 2 7 1091 364 263 0 31 chr12 66353224 66353322 -54904208 - B4 SINE B4 -197 95 1 7 1091 656 223 138 49 chr12 66353343 66353546 -54903984 - ID_B1 SINE B4 -2 222 2 7 1091 1322 120 5 11 chr12 66354584 66354770 -54902760 - B2_Mm2 SINE B2 -10 185 1 7 1091 320 225 14 14 chr12 66354776 66354848 -54902682 - PB1D7 SINE Alu -6 114 43 7 1091 428 301 161 6 chr12 66355208 66355382 -54902148 - MER20 DNA MER1_type -5 214 14 7 1091 1860 221 79 35 chr12 66357193 66357647 -54899883 + RMER19C LTR ERVK 138 611 0 7 1091 1200 78 6 40 chr12 66358769 66358942 -54898588 - L1_Mus1 LINE L1 -4 6563 6397 7 1091 254 305 0 0 chr12 66359012 66359071 -54898459 + tRNA-Gly-GGY tRNA tRNA 9 67 -7 7 1091 32 26 0 0 chr12 66359799 66359838 -54897692 + AT_rich Low_complexity Low_complexity 1 39 0 7 1091 42204 8 2 1 chr12 66361016 66367988 -54889542 - L1Md_A LINE L1 0 6582 1 7 1091 2030 171 80 5 chr12 66368203 66368590 -54888940 + MTC LTR MaLR 6 421 0 7 1091 333 0 0 0 chr12 66368716 66368753 -54888777 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1091 926 288 24 38 chr12 66368774 66369066 -54888464 - B4 SINE B4 -2 290 3 7 1091 451 304 27 0 chr12 66369069 66369217 -54888313 + MER2 DNA MER2_type 72 223 -122 7 1091 1057 258 103 73 chr12 66369218 66369586 -54887944 + MTEa LTR MaLR 1 379 0 7 1091 3048 291 142 28 chr12 66369586 66370814 -54886716 + MTEa-int LTR MaLR 1 1369 -211 7 1091 2003 155 38 12 chr12 66370823 66371169 -54886361 - ORR1B2 LTR MaLR -12 355 1 7 1091 764 284 13 51 chr12 66371169 66371383 -54886147 + MTEa-int LTR MaLR 1374 1578 -2 7 1091 1291 275 36 39 chr12 66371385 66371744 -54885786 + MTEa LTR MaLR 1 358 -21 7 1091 945 238 0 41 chr12 66371801 66371998 -54885532 - B3 SINE B2 0 216 28 7 1091 224 228 43 21 chr12 66372154 66372248 -54885282 + A-rich Low_complexity Low_complexity 4 99 0 7 1091 384 323 44 6 chr12 66372281 66372440 -54885090 - Lx7 LINE L1 -397 7299 7135 7 1091 302 315 70 8 chr12 66372556 66372684 -54884846 - MER2 DNA MER2_type -161 184 49 7 1091 918 136 21 0 chr12 66374493 66374633 -54882897 + B1_Mus1 SINE Alu 5 147 -1 7 1091 396 0 0 0 chr12 66375248 66375292 -54882238 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 7 1091 401 181 46 17 chr12 66375514 66375688 -54881842 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 7 1091 1012 290 45 48 chr12 66375812 66376142 -54881388 - MLT2B1 LTR ERVL -179 341 13 7 1091 1010 160 0 0 chr12 66376379 66376529 -54881001 - B1_Mur4 SINE Alu 0 150 1 7 1091 186 43 0 0 chr12 66376627 66376650 -54880880 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1091 243 61 0 0 chr12 66376738 66376771 -54880759 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1091 1023 80 0 0 chr12 66376771 66376921 -54880609 + (GA)n Simple_repeat Simple_repeat 1 151 0 7 1091 942 318 50 30 chr12 66376929 66377292 -54880238 - Lx8 LINE L1 -244 7229 6860 7 1091 209 217 22 0 chr12 66377351 66377397 -54880133 + (CATA)n Simple_repeat Simple_repeat 2 48 0 7 1091 383 294 82 11 chr12 66377430 66377612 -54879918 - L1MC4 LINE L1 -225 7817 7623 7 1091 7405 225 35 47 chr12 66377637 66378389 -54879141 - Lx6 LINE L1 -11 7449 6728 7 1091 818 125 88 0 chr12 66378389 66378525 -54879005 - B1_Mus1 SINE Alu 0 148 1 7 1091 7405 225 35 47 chr12 66378525 66379523 -54878007 - Lx6 LINE L1 -733 6727 5720 7 1091 2455 194 79 14 chr12 66379712 66380270 -54877260 - Lx3C LINE L1 0 7000 6398 7 1091 482 273 133 36 chr12 66380270 66380568 -54876962 - ORR1B1 LTR MaLR -53 366 13 7 1091 212 173 39 0 chr12 66380568 66380620 -54876910 + GA-rich Low_complexity Low_complexity 2 55 0 7 1091 1169 98 6 0 chr12 66380626 66380800 -54876730 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 7 1091 846 59 34 0 chr12 66380802 66380920 -54876610 - MusHAL1 LINE L1 -725 1987 1866 7 1091 1008 143 50 3 chr12 66380926 66381111 -54876419 - ORR1B1 LTR MaLR -215 179 1 7 1091 15266 174 50 14 chr12 66381111 66384156 -54873374 - Lx6 LINE L1 -365 5515 2362 7 1091 7376 141 51 48 chr12 66384500 66387371 -54870159 - Lx LINE L1 -3 6651 1203 7 1091 35156 44 11 17 chr12 66387377 66389026 -54868504 - L1Md_T LINE L1 0 6582 4928 8 1091 225 183 46 77 chr12 66389026 66389091 -54868439 + RMER20A LTR ERVK 186 248 -268 8 1091 35156 44 11 17 chr12 66389091 66393558 -54863972 - L1Md_T LINE L1 0 4927 442 8 1091 470 296 207 19 chr12 66393558 66393920 -54863610 + Charlie1 DNA MER1_type 2331 2760 -21 8 1091 924 188 75 0 chr12 66394022 66394208 -54863322 - ORR1C2 LTR MaLR 0 384 185 8 1091 915 112 0 0 chr12 66394215 66394385 -54863145 + (GA)n Simple_repeat Simple_repeat 2 171 0 8 1091 477 220 33 24 chr12 66394487 66394621 -54862909 - ORR1C2 LTR MaLR -220 147 14 8 1091 4330 142 15 7 chr12 66394823 66395510 -54862020 + RLTR17 LTR ERVK 1 692 0 8 1091 359 313 153 53 chr12 66395515 66395893 -54861637 - L2 LINE L2 -564 2855 2440 8 1091 255 245 0 0 chr12 66396035 66396129 -54861401 + (CCAA)n Simple_repeat Simple_repeat 2 95 0 8 1091 3270 53 34 0 chr12 66396836 66397249 -54860281 + L1_Mus1 LINE L1 6140 6566 -1 8 1091 198 228 61 13 chr12 66397377 66397464 -54860066 + L2c LINE L2 3235 3353 -34 8 1091 3070 152 74 20 chr12 66398764 66399320 -54858210 + Lx3C LINE L1 6384 6969 -7 8 1091 23 0 0 0 chr12 66399322 66399345 -54858185 + AT_rich Low_complexity Low_complexity 1 23 0 8 1091 189 0 0 0 chr12 66399461 66399482 -54858048 + (TA)n Simple_repeat Simple_repeat 1 21 0 8 1091 2530 159 29 2 chr12 66399547 66399957 -54857573 - MTC LTR MaLR 0 421 1 8 1091 853 242 90 11 chr12 66401540 66401728 -54855802 - B3 SINE B2 -6 210 8 8 1091 512 248 43 36 chr12 66401899 66402037 -54855493 - B1F1 SINE Alu -10 139 1 8 1091 1247 91 0 31 chr12 66402389 66402582 -54854948 - L1_Mus4 LINE L1 -155 6481 6295 8 1091 419 18 0 0 chr12 66402583 66402640 -54854890 + Lx LINE L1 6591 6647 -7 8 1091 298 163 51 0 chr12 66402828 66402926 -54854604 + (TA)n Simple_repeat Simple_repeat 2 104 0 8 1091 22 0 0 0 chr12 66402936 66402958 -54854572 + AT_rich Low_complexity Low_complexity 1 22 0 8 1091 307 341 0 0 chr12 66402990 66403075 -54854455 + polypyrimidine Low_complexity Low_complexity 4 88 0 8 1091 985 122 23 0 chr12 66403078 66403250 -54854280 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 8 1091 300 53 0 0 chr12 66403250 66403288 -54854242 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 8 1091 1333 18 6 6 chr12 66403289 66403454 -54854076 + (TTC)n Simple_repeat Simple_repeat 2 166 0 8 1091 656 171 42 98 chr12 66403454 66403597 -54853933 - B1_Mur4 SINE Alu -11 139 5 8 1091 597 152 15 8 chr12 66403654 66403787 -54853743 - Lx9 LINE L1 -1 7643 7510 8 1091 336 270 101 22 chr12 66403815 66403993 -54853537 - L1_Mur3 LINE L1 -332 5548 5357 8 1091 718 221 170 6 chr12 66404011 66404193 -54853337 + B3 SINE B2 1 212 -4 8 1091 193 218 26 0 chr12 66404285 66404363 -54853167 + (TA)n Simple_repeat Simple_repeat 1 80 0 8 1091 23 33 0 0 chr12 66404391 66404421 -54853109 + AT_rich Low_complexity Low_complexity 1 30 0 8 1091 5223 151 28 9 chr12 66405095 66406091 -54851439 - L1_Mur2 LINE L1 -356 5521 4507 8 1091 834 95 16 23 chr12 66406089 66406218 -54851312 + L1_Mur2 LINE L1 5501 5628 -249 8 1091 3405 200 40 33 chr12 66406226 66406982 -54850548 + Lx5 LINE L1 6288 7048 -2 8 1091 586 241 20 41 chr12 66407007 66407154 -54850376 + B1F2 SINE Alu 1 144 -5 8 1091 2009 300 72 20 chr12 66407699 66409025 -54848505 + L1_Mur3 LINE L1 2180 3573 -2307 8 1091 21 0 0 0 chr12 66409203 66409224 -54848306 + AT_rich Low_complexity Low_complexity 1 21 0 8 1091 1163 54 14 0 chr12 66409634 66409781 -54847749 + B1_Mur3 SINE Alu 1 149 0 8 1091 225 154 0 0 chr12 66409796 66409835 -54847695 + A-rich Low_complexity Low_complexity 1 39 0 8 1091 323 311 0 0 chr12 66410133 66410223 -54847307 + PB1D10 SINE Alu 27 116 -1 8 1091 717 134 0 8 chr12 66410312 66410440 -54847090 - L1VL2 LINE L1 -5579 756 630 8 1091 5600 85 25 3 chr12 66410486 66411997 -54845533 - L1VL2 LINE L1 -1789 1826 284 8 1091 1820 281 41 8 chr12 66412021 66412749 -54844781 + L1_Mur3 LINE L1 3616 4367 -1513 8 1091 180 0 0 0 chr12 66412917 66412937 -54844593 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 8 1091 256 273 56 11 chr12 66413192 66413281 -54844249 + RMER1B Other Other 10 102 -964 8 1091 3479 138 75 26 chr12 66413283 66414042 -54843488 + ORR1A4-int LTR MaLR 933 1772 -191 8 1091 3100 95 7 0 chr12 66414097 66414538 -54842992 - L1_Mus3 LINE L1 0 6638 6195 8 1091 573 68 0 0 chr12 66414541 66414615 -54842915 + L1_Mus3 LINE L1 6107 6180 -458 8 1091 888 101 29 0 chr12 66414615 66414754 -54842776 + ORR1A4-int LTR MaLR 1821 1963 0 8 1091 2006 123 25 16 chr12 66414754 66415077 -54842453 + ORR1A4 LTR MaLR 1 326 -3 8 1091 2628 159 122 9 chr12 66415079 66415626 -54841904 + RMER1A Other Other 418 1026 -4 8 1091 1892 207 70 38 chr12 66415628 66416055 -54841475 + RLTR41 LTR ERV1 6 446 0 8 1091 347 233 68 8 chr12 66416055 66416172 -54841358 + L1_Mur3 LINE L1 4407 4530 -1350 8 1091 2034 284 96 29 chr12 66416184 66416921 -54840609 - Lx8 LINE L1 -441 7032 6246 8 1091 398 62 0 0 chr12 66416980 66417044 -54840486 - L1_Mus3 LINE L1 -6 6632 6569 8 1091 414 274 31 93 chr12 66417728 66417857 -54839673 - B1F1 SINE Alu -23 126 6 8 1091 257 0 0 29 chr12 66417864 66417898 -54839632 + (TTA)n Simple_repeat Simple_repeat 1 33 0 8 1091 234 329 41 0 chr12 66418239 66418312 -54839218 - MLT1F2 LTR MaLR -428 132 57 8 1091 193 360 69 34 chr12 66418394 66418598 -54838932 + MIRb SINE MIR 25 235 -33 8 1091 289 255 159 7 chr12 66419518 66419656 -54837874 + L1M3f LINE L1 86 244 -6786 8 1091 590 299 27 32 chr12 66420191 66420412 -54837118 - ID_B1 SINE B4 -2 222 3 8 1091 363 313 99 17 chr12 66421020 66421855 -54835675 + L1M3f LINE L1 1549 2751 -4356 8 1091 808 282 134 31 chr12 66421877 66422331 -54835199 - L1_Rod LINE L1 -87 5760 5260 8 1091 512 266 107 16 chr12 66423002 66423189 -54834341 + Lx8 LINE L1 6955 7158 -315 8 1091 471 35 0 0 chr12 66423234 66423291 -54834239 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 1091 324 0 0 0 chr12 66423302 66423338 -54834192 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1091 252 202 158 37 chr12 66423426 66423508 -54834022 + MTD LTR MaLR 1 92 -327 8 1091 1808 211 47 14 chr12 66423508 66423931 -54833599 + L1_Mur3 LINE L1 5436 5872 -8 8 1091 216 158 0 0 chr12 66424079 66424117 -54833413 + (TA)n Simple_repeat Simple_repeat 1 38 0 8 1091 3052 69 9 16 chr12 66424151 66424578 -54832952 - L1_Mus3 LINE L1 0 6638 6215 8 1091 2912 168 47 20 chr12 66424588 66425146 -54832384 - RLTR20B3 LTR ERVK -4 573 1 8 1091 1214 20 0 0 chr12 66425272 66425420 -54832110 - L1Md_F2 LINE L1 -605 5977 5830 8 1091 4922 28 2 0 chr12 66425420 66425992 -54831538 + L1Md_F2 LINE L1 6010 6582 0 8 1091 432 271 19 50 chr12 66426300 66426444 -54831086 - B3 SINE B2 -39 154 16 8 1091 550 197 90 0 chr12 66426508 66426630 -54830900 + B1F SINE Alu 7 139 -10 8 1091 606 39 0 0 chr12 66427758 66427835 -54829695 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 1091 1357 272 76 5 chr12 66428222 66428668 -54828862 + Lx8 LINE L1 6644 7121 -352 8 1091 31 0 0 0 chr12 66430025 66430056 -54827474 + AT_rich Low_complexity Low_complexity 1 31 0 8 1091 465 19 0 0 chr12 66430209 66430263 -54827267 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 1091 225 94 0 0 chr12 66430627 66430659 -54826871 + (TTC)n Simple_repeat Simple_repeat 2 33 0 8 1091 720 341 111 27 chr12 66431340 66431747 -54825783 + MER68 LTR ERVL 2 442 -121 8 1091 247 305 97 48 chr12 66432131 66432255 -54825275 - MLT1A1 LTR MaLR -6 402 273 8 1091 5634 63 14 9 chr12 66433256 66433992 -54823538 - L1Md_F2 LINE L1 -11 6571 5833 8 1091 532 209 47 0 chr12 66434339 66434487 -54823043 + L1MA4 LINE L1 5744 5898 -402 8 1091 233 280 15 22 chr12 66434655 66434790 -54822740 + L1MA4 LINE L1 6115 6248 -52 8 1091 3900 145 98 93 chr12 66434816 66435718 -54821812 - RMER17A2 LTR ERVK 0 906 1 8 1091 844 250 5 55 chr12 66435747 66435777 -54821753 - B3 SINE B2 -27 189 167 8 1091 429 20 0 0 chr12 66435777 66435827 -54821703 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1091 867 238 0 3 chr12 66435827 66435995 -54821535 - B3A SINE B2 -50 166 1 8 1091 1473 201 3 28 chr12 66436010 66436333 -54821197 - Lx7 LINE L1 -1782 5914 5600 8 1091 1992 181 74 13 chr12 66436333 66436724 -54820806 + MTC LTR MaLR 1 415 -6 8 1091 1095 236 36 0 chr12 66436746 66437026 -54820504 - Lx7 LINE L1 -278 5602 5313 8 1091 665 326 4 12 chr12 66437028 66437273 -54820257 + Lx7 LINE L1 6959 7201 -495 8 1091 339 324 19 10 chr12 66437640 66437743 -54819787 - MER94 DNA AcHobo -30 104 1 8 1091 290 284 37 64 chr12 66437873 66437982 -54819548 + MLT1G LTR MaLR 106 211 -368 8 1091 873 172 172 0 chr12 66438083 66438275 -54819255 + URR1B DNA MER1_type 1 225 0 8 1091 781 341 128 26 chr12 66438484 66438836 -54818694 + MLT1G LTR MaLR 191 578 -13 8 1091 368 238 108 38 chr12 66439981 66440138 -54817392 - Lx8 LINE L1 -1567 5906 5739 8 1091 825 90 15 8 chr12 66440181 66440315 -54817215 + Lx LINE L1 6516 6650 -4 8 1091 1863 79 4 4 chr12 66440352 66440606 -54816924 + L1_Mus2 LINE L1 6313 6566 0 8 1091 972 88 0 0 chr12 66441745 66441881 -54815649 + B1_Mus2 SINE Alu 6 141 -6 8 1091 379 0 39 0 chr12 66441883 66441934 -54815596 + (CAA)n Simple_repeat Simple_repeat 2 54 0 8 1091 232 137 13 27 chr12 66441934 66442009 -54815521 + A-rich Low_complexity Low_complexity 5 78 0 8 1091 1412 247 34 71 chr12 66443029 66443369 -54814161 + ORR1D2 LTR MaLR 6 341 -29 8 1091 1095 84 0 0 chr12 66443369 66443511 -54814019 - B1_Mus2 SINE Alu -5 142 1 8 1091 1412 247 34 71 chr12 66443511 66443549 -54813981 + ORR1D2 LTR MaLR 342 370 0 8 1091 23 0 0 0 chr12 66443722 66443745 -54813785 + AT_rich Low_complexity Low_complexity 1 23 0 8 1091 2057 98 13 10 chr12 66443745 66444045 -54813485 - L1Md_F2 LINE L1 -8 6574 6274 8 1091 20456 67 6 1 chr12 66444047 66447178 -54810352 - L1Md_F2 LINE L1 -446 6136 2991 8 1091 3682 58 20 8 chr12 66447178 66447668 -54809862 - LTRIS2 LTR ERV1 0 564 69 8 1091 496 122 0 43 chr12 66447677 66447771 -54809759 - MusHAL1 LINE L1 -917 1795 1706 8 1091 835 218 22 22 chr12 66447879 66448104 -54809426 - Lx7 LINE L1 0 7696 7472 8 1091 2347 186 59 5 chr12 66448201 66448643 -54808887 - RMER20B LTR ERVK -160 467 2 8 1091 24 0 0 0 chr12 66449918 66449942 -54807588 + AT_rich Low_complexity Low_complexity 1 24 0 8 1091 227 338 12 0 chr12 66450047 66450127 -54807403 - Lx8 LINE L1 -124 7349 7269 8 1091 598 185 15 0 chr12 66452184 66452319 -54805211 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 9 1091 982 275 20 82 chr12 66452324 66452665 -54804865 - MT2B LTR ERVL -45 556 237 9 1091 2422 151 84 26 chr12 66452711 66453213 -54804317 + L1_Mus1 LINE L1 467 997 -5619 9 1091 1147 99 0 0 chr12 66453215 66453387 -54804143 + L1_Mm LINE L1 2227 2398 -3485 9 136 29901 103 3 4 chr12 66453378 66458654 -54798876 + L1_Mus1 LINE L1 1014 6287 -280 9 1092 3764 35 39 6 chr12 66458654 66459121 -54798409 - RLTR45 LTR ERVK 0 482 1 9 1092 7191 75 2 7 chr12 66459121 66459405 -54798125 + L1_Mus1 LINE L1 6288 6565 -2 9 1092 430 100 0 24 chr12 66459466 66459548 -54797982 + Lx2A LINE L1 6923 7002 -6 9 1092 497 250 8 55 chr12 66459548 66459675 -54797855 - MT2B LTR ERVL -412 121 1 9 1092 22 0 0 0 chr12 66460360 66460382 -54797148 + AT_rich Low_complexity Low_complexity 1 22 0 9 1092 305 317 48 42 chr12 66460980 66461148 -54796382 - L1MEg LINE L1 -4034 2050 1882 9 1092 600 14 0 0 chr12 66461154 66461223 -54796307 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 9 1092 353 213 116 41 chr12 66461226 66461390 -54796140 + L1M2 LINE L1 5082 5270 -873 9 1092 488 174 24 24 chr12 66461504 66461628 -54795902 - Lx9 LINE L1 -2 7642 7519 9 1092 587 211 42 7 chr12 66461641 66461784 -54795746 - Lx8 LINE L1 -650 6823 6676 9 1092 269 238 78 95 chr12 66461792 66461908 -54795622 + MTE2a LTR MaLR 243 356 -23 9 1092 186 43 0 0 chr12 66461914 66461937 -54795593 + (CTA)n Simple_repeat Simple_repeat 1 23 0 9 1092 284 283 0 0 chr12 66462283 66462343 -54795187 + PB1D10 SINE Alu 1 60 -57 9 1092 28 29 0 0 chr12 66462986 66463021 -54794509 + AT_rich Low_complexity Low_complexity 1 35 0 9 1092 207 0 0 0 chr12 66464103 66464126 -54793404 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1092 201 158 0 0 chr12 66464525 66464563 -54792967 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9 1092 959 150 42 48 chr12 66465274 66465463 -54792067 - B2_Mm2 SINE B2 -5 190 3 9 1092 410 331 67 63 chr12 66465711 66465995 -54791535 + B4A SINE B4 6 290 -2 9 1092 288 53 0 0 chr12 66466210 66466248 -54791282 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1092 204 264 0 65 chr12 66466496 66466589 -54790941 + (CACCT)n Simple_repeat Simple_repeat 3 89 0 9 1092 526 333 125 0 chr12 66466799 66466991 -54790539 - B4A SINE B4 -76 216 1 9 1092 24 0 0 0 chr12 66467150 66467174 -54790356 + AT_rich Low_complexity Low_complexity 1 24 0 9 1092 270 306 81 7 chr12 66467746 66467894 -54789636 - L1MA4 LINE L1 -83 6217 6059 9 1092 5248 149 99 3 chr12 66468573 66469559 -54787971 + RLTR25A LTR ERVK 23 1103 0 9 1092 3314 50 0 0 chr12 66469740 66470136 -54787394 + MTA_Mm LTR MaLR 1 396 0 9 1092 241 340 29 20 chr12 66470216 66470318 -54787212 + MIRb SINE MIR 158 260 -8 9 1092 4742 52 7 2 chr12 66470379 66470963 -54786567 + LTRIS_Mus LTR ERV1 1 587 0 9 1092 1004 171 41 22 chr12 66470983 66471168 -54786362 - ORR1C1 LTR MaLR -138 240 31 9 1092 315 0 0 0 chr12 66471168 66471203 -54786327 + (TA)n Simple_repeat Simple_repeat 2 36 0 9 1092 879 208 117 19 chr12 66471203 66471223 -54786307 - ORR1C1 LTR MaLR -337 30 7 9 1092 2877 269 81 38 chr12 66471246 66471801 -54785729 - Lx9 LINE L1 -93 7551 6944 9 1092 1277 27 0 0 chr12 66471801 66471948 -54785582 + B1_Mm SINE Alu 1 147 0 9 1092 2877 269 81 38 chr12 66471948 66472510 -54785020 - Lx9 LINE L1 -701 6943 6386 9 1092 284 25 50 0 chr12 66472542 66472582 -54784948 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 9 1092 459 0 0 0 chr12 66472587 66472638 -54784892 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1092 341 312 41 61 chr12 66473340 66473487 -54784043 + MLT2B2 LTR ERVL 419 562 0 9 1092 196 302 0 0 chr12 66473631 66473674 -54783856 - MER5A DNA MER1_type -3 186 144 9 1092 226 269 0 19 chr12 66473740 66473793 -54783737 + MER5A DNA MER1_type 130 181 -8 9 1092 812 236 37 69 chr12 66473928 66474050 -54783480 - B3 SINE B2 0 216 92 9 1092 3632 26 28 0 chr12 66474050 66474476 -54783054 + L1Md_F2 LINE L1 6133 6570 -12 9 1092 812 236 37 69 chr12 66474476 66474571 -54782959 - B3 SINE B2 -125 91 6 9 1092 646 240 7 33 chr12 66474761 66474912 -54782618 - B1_Mur2 SINE Alu -2 147 1 9 1092 207 273 18 35 chr12 66474965 66475022 -54782508 + MER5A DNA MER1_type 130 185 -4 9 1092 185 119 24 0 chr12 66475025 66475067 -54782463 + (TAAAAA)n Simple_repeat Simple_repeat 5 47 0 9 1092 360 0 0 0 chr12 66475160 66475200 -54782330 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1092 2029 292 85 24 chr12 66475219 66476127 -54781403 - Lx9 LINE L1 -206 7438 6476 9 1092 692 85 119 14 chr12 66477235 66477378 -54780152 + Lx9 LINE L1 7487 7644 0 9 1092 3618 138 18 65 chr12 66477521 66478207 -54779323 + RMER19B LTR ERVK 1 894 -8 9 1092 4730 115 33 62 chr12 66478592 66479419 -54778111 - RLTR13B4 LTR ERVK 0 803 1 9 1092 252 0 0 0 chr12 66479518 66479546 -54777984 + (TCTA)n Simple_repeat Simple_repeat 1 28 0 9 1092 368 189 12 54 chr12 66479552 66479720 -54777810 + (TA)n Simple_repeat Simple_repeat 1 161 0 9 1092 24 0 0 0 chr12 66480113 66480137 -54777393 + AT_rich Low_complexity Low_complexity 1 24 0 9 1092 504 354 74 20 chr12 66480202 66480499 -54777031 + MLT1A0 LTR MaLR 10 322 -43 9 1092 531 316 102 36 chr12 66480640 66481089 -54776441 - L1MEg LINE L1 -5111 973 495 9 1092 2693 145 35 62 chr12 66481760 66482304 -54775226 - RLTR24 LTR ERV1 0 529 1 9 1092 275 238 15 60 chr12 66482780 66482847 -54774683 - ID_B1 SINE B4 -15 209 146 9 1092 333 0 0 0 chr12 66483604 66483641 -54773889 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1092 24 0 0 0 chr12 66483837 66483861 -54773669 + AT_rich Low_complexity Low_complexity 1 24 0 9 1092 2353 88 3 3 chr12 66483919 66484228 -54773302 + RLTR27 LTR ERVK 1 309 0 9 1092 192 97 0 0 chr12 66484410 66484441 -54773089 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 9 1092 1160 192 27 0 chr12 66484515 66484734 -54772796 - URR1B DNA MER1_type 0 225 1 9 1092 3683 56 168 6 chr12 66485092 66485597 -54771933 - LTRIS_Mus LTR ERV1 0 587 1 9 1092 358 288 82 7 chr12 66485676 66485823 -54771707 - MLT1C LTR MaLR -64 403 246 9 1092 289 276 59 59 chr12 66486170 66486305 -54771225 + MLT1A1 LTR MaLR 270 404 -4 9 1092 3629 68 89 23 chr12 66486499 66487028 -54770502 - LTRIS2 LTR ERV1 0 564 1 9 1092 288 0 0 0 chr12 66488090 66488122 -54769408 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1092 983 320 18 7 chr12 66488220 66488494 -54769036 + B4A SINE B4 6 282 -10 9 1092 912 93 0 0 chr12 66488524 66488674 -54768856 + (CA)n Simple_repeat Simple_repeat 2 151 0 9 1092 493 223 35 9 chr12 66488833 66488946 -54768584 - PB1D9 SINE Alu -3 117 2 9 1092 234 0 0 0 chr12 66489004 66489030 -54768500 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1092 295 221 0 42 chr12 66490305 66490376 -54767154 - ID4_ SINE ID -15 68 1 9 1092 323 221 25 38 chr12 66490415 66490495 -54767035 - ID4 SINE ID -3 80 2 9 1092 612 252 50 32 chr12 66490599 66490837 -54766693 + B4A SINE B4 2 286 -6 9 1092 404 54 0 0 chr12 66490953 66491009 -54766521 + L1_Mus2 LINE L1 6511 6566 0 9 1092 217 75 24 24 chr12 66491012 66491053 -54766477 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 9 1092 186 276 35 0 chr12 66491325 66491383 -54766147 - L2 LINE L2 -954 2465 2406 9 1092 488 332 142 12 chr12 66491391 66491814 -54765716 - LTR16B1 LTR ERVL -2 478 1 9 1092 837 236 12 0 chr12 66491860 66492025 -54765505 - B3 SINE B2 -47 169 3 9 1092 238 301 177 57 chr12 66492032 66492123 -54765407 + LTR85a LTR Gypsy? 26 112 -590 9 1092 1905 168 40 24 chr12 66492123 66492495 -54765035 - ORR1C1 LTR MaLR 0 378 1 9 1092 238 301 177 57 chr12 66492495 66492544 -54764986 + LTR85a LTR Gypsy? 113 183 -519 9 1092 2316 98 3 58 chr12 66493330 66493676 -54763854 + ORR1A2 LTR MaLR 1 327 0 9 1092 423 0 0 0 chr12 66493682 66493729 -54763801 + (TC)n Simple_repeat Simple_repeat 1 47 0 9 1092 295 345 127 0 chr12 66494309 66494474 -54763056 - MIRb SINE MIR -10 258 73 9 1092 471 291 20 54 chr12 66495303 66495452 -54762078 - B4A SINE B4 -148 144 1 9 1092 24 0 0 0 chr12 66495830 66495854 -54761676 + AT_rich Low_complexity Low_complexity 1 24 0 9 1092 189 0 0 0 chr12 66497694 66497715 -54759815 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1092 294 381 33 33 chr12 66497736 66497918 -54759612 - MER5A DNA MER1_type -6 183 2 9 1092 43 35 0 0 chr12 66498057 66498114 -54759416 + AT_rich Low_complexity Low_complexity 1 57 0 9 1092 613 274 22 33 chr12 66498135 66498316 -54759214 - B3A SINE B2 -16 182 4 9 1092 25 0 0 0 chr12 66498320 66498345 -54759185 + AT_rich Low_complexity Low_complexity 1 25 0 9 1092 453 257 43 34 chr12 66498366 66498483 -54759047 - RSINE1 SINE B4 -47 118 1 9 1092 560 251 74 30 chr12 66499010 66499240 -54758290 + Lx8 LINE L1 6982 7221 -252 9 1092 459 52 0 0 chr12 66500042 66500100 -54757430 + (CCA)n Simple_repeat Simple_repeat 1 58 0 1 1092 471 35 0 0 chr12 66501292 66501349 -54756181 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1092 758 217 122 173 chr12 66501356 66501592 -54755938 - RLTR18B LTR ERVK -9 503 292 3 1092 3559 139 89 16 chr12 66501592 66502233 -54755297 - RLTR17 LTR ERVK -4 688 1 4 1092 758 217 122 173 chr12 66502233 66502325 -54755205 - RLTR18B LTR ERVK -221 291 192 3 1092 559 197 57 16 chr12 66502658 66502782 -54754748 - B1_Mur1 SINE Alu -5 144 16 5 1092 305 288 80 56 chr12 66502693 66502818 -54754712 - B4 SINE B4 -95 197 70 6 1092 230 216 224 21 chr12 66502859 66502969 -54754561 - B4A SINE B4 -128 164 36 7 1092 430 291 13 7 chr12 66504010 66504159 -54753371 + MIR SINE MIR 59 208 -54 8 1092 25 0 0 0 chr12 66504164 66504189 -54753341 + AT_rich Low_complexity Low_complexity 1 25 0 9 1092 747 181 170 0 chr12 66504189 66504360 -54753170 - RMER1B Other Other -9 1057 858 1 1092 396 0 0 0 chr12 66504363 66504407 -54753123 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 1092 468 0 0 0 chr12 66504431 66504483 -54753047 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 1 1092 426 98 20 14 chr12 66504498 66504597 -54752933 - B2_Mm2 SINE B2 -102 114 20 1 1092 832 135 7 14 chr12 66504590 66504733 -54752797 - B2_Mm1a SINE B2 -51 142 1 1 1092 1865 271 14 163 chr12 66504735 66505679 -54751851 - RMER1A Other Other -227 803 1 1 1092 416 239 314 5 chr12 66505679 66505864 -54751666 - RMER1A Other Other -774 256 15 1 1092 1024 235 159 21 chr12 66505848 66506174 -54751356 - RMER1B Other Other -651 415 45 1 1092 228 238 0 0 chr12 66506569 66506611 -54750919 + polypyrimidine Low_complexity Low_complexity 4 45 0 1 1092 969 172 0 0 chr12 66506612 66506792 -54750738 + CT-rich Low_complexity Low_complexity 1 180 0 1 1092 209 161 0 0 chr12 66506798 66506829 -54750701 + polypyrimidine Low_complexity Low_complexity 150 180 0 1 1092 304 211 11 22 chr12 66507312 66507404 -54750126 + GA-rich Low_complexity Low_complexity 3 93 0 2 1092 241 338 62 8 chr12 66507927 66508041 -54749489 + L2c LINE L2 3244 3380 -7 2 1092 591 74 0 0 chr12 66509393 66509474 -54748056 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1092 226 347 95 0 chr12 66509863 66509958 -54747572 - L2a LINE L2 -8 3418 3315 2 1092 319 306 154 27 chr12 66510280 66510468 -54747062 + MLT1A LTR MaLR 9 220 -170 2 1092 363 44 0 0 chr12 66510984 66511029 -54746501 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1092 376 320 114 23 chr12 66511035 66511166 -54746364 - RSINE1 SINE B4 -13 152 10 2 1092 441 116 0 0 chr12 66511506 66511575 -54745955 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1092 224 222 0 0 chr12 66512567 66512612 -54744918 + ID4 SINE ID 18 62 -21 2 1092 2540 44 2 0 chr12 66513047 66513378 -54744152 - L1Md_T LINE L1 -472 6110 5799 2 1092 1877 60 0 0 chr12 66513378 66513610 -54743920 + L1Md_T LINE L1 6351 6582 0 3 1092 237 327 151 38 chr12 66513657 66513816 -54743714 - MIRb SINE MIR -72 190 14 3 1092 180 0 0 0 chr12 66514441 66514461 -54743069 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1092 25 0 0 0 chr12 66515446 66515471 -54742059 + AT_rich Low_complexity Low_complexity 1 25 0 3 1092 207 100 0 0 chr12 66516077 66516107 -54741423 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1092 519 303 45 0 chr12 66516123 66516255 -54741275 - RSINE1 SINE B4 -18 147 10 3 1092 718 239 32 32 chr12 66516427 66516643 -54740887 - B3 SINE B2 0 216 1 3 1092 22 0 0 0 chr12 66517989 66518011 -54739519 + AT_rich Low_complexity Low_complexity 1 22 0 3 1092 2545 94 26 10 chr12 66518829 66519215 -54738315 - L1_Mus4 LINE L1 -2 6634 6243 3 1092 257 0 30 0 chr12 66519341 66519374 -54738156 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1092 377 285 12 6 chr12 66519472 66519638 -54737892 + L1MC LINE L1 4416 4582 -1564 4 1092 368 294 93 21 chr12 66519645 66519881 -54737649 + L1MC3 LINE L1 6629 6881 -904 4 1092 322 299 102 0 chr12 66520099 66520236 -54737294 + L1MC3 LINE L1 6887 7037 -748 4 1092 541 295 91 13 chr12 66520265 66520639 -54736891 + L1MC3 LINE L1 7368 7770 -15 4 1092 1128 129 117 19 chr12 66521377 66521582 -54735948 + URR1A DNA MER1_type 1 225 -1 4 1092 322 211 28 14 chr12 66522043 66522115 -54735415 + AmnSINE1 SINE SINE 108 180 -395 4 1092 326 280 0 0 chr12 66522213 66522288 -54735242 + AmnSINE1 SINE SINE 306 380 -195 4 1092 542 307 127 38 chr12 66522910 66523147 -54734383 - MER31B LTR ERV1 -201 265 8 4 1092 553 296 85 38 chr12 66523266 66523673 -54733857 - RMER5 LTR ERV1 -10 524 69 4 1092 387 141 0 0 chr12 66523941 66524005 -54733525 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 4 1092 279 262 14 110 chr12 66524041 66524114 -54733416 - ID4 SINE ID -10 73 8 4 1092 262 271 21 96 chr12 66524136 66524156 -54733374 - PB1D10 SINE Alu 0 117 105 4 1092 285 29 0 0 chr12 66524156 66524190 -54733340 + (GGGTG)n Simple_repeat Simple_repeat 5 38 0 4 1092 262 271 21 96 chr12 66524190 66524263 -54733267 - PB1D10 SINE Alu -13 104 31 4 1092 519 272 59 44 chr12 66524295 66524595 -54732935 + MER31B LTR ERV1 1 392 -74 5 1092 21 0 0 0 chr12 66525099 66525120 -54732410 + AT_rich Low_complexity Low_complexity 1 21 0 5 1092 688 245 60 5 chr12 66525263 66525464 -54732066 + B3 SINE B2 5 216 0 5 1092 216 97 0 0 chr12 66525905 66525936 -54731594 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1092 387 60 0 0 chr12 66525936 66525986 -54731544 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1092 1728 237 52 40 chr12 66525987 66526541 -54730989 - RMER1B Other Other -20 1046 486 5 1092 221 216 11 33 chr12 66526683 66526774 -54730756 + GA-rich Low_complexity Low_complexity 3 91 0 5 1092 334 298 71 24 chr12 66528290 66528417 -54729113 + B3 SINE B2 1 133 -83 5 1092 391 191 0 14 chr12 66530192 66530261 -54727269 + RSINE1 SINE B4 3 70 -95 5 1092 378 129 0 0 chr12 66530305 66530367 -54727163 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1092 21 0 0 0 chr12 66530743 66530764 -54726766 + AT_rich Low_complexity Low_complexity 1 21 0 6 1092 224 333 50 0 chr12 66531205 66531304 -54726226 + PB1D7 SINE Alu 9 112 -8 6 1092 455 194 84 21 chr12 66531339 66531434 -54726096 + B1_Mur2 SINE Alu 34 134 -15 6 1092 223 163 0 0 chr12 66531536 66531579 -54725951 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1092 2976 130 19 28 chr12 66532162 66532694 -54724836 - RLTR11A2 LTR ERVK 0 527 1 6 1092 185 81 0 98 chr12 66532939 66532980 -54724550 + T-rich Low_complexity Low_complexity 1 37 0 6 1092 1129 96 0 0 chr12 66532980 66533126 -54724404 - B1_Mus2 SINE Alu 0 147 2 6 1092 358 303 85 22 chr12 66533469 66533692 -54723838 - L1M2 LINE L1 -1070 5073 4837 6 1092 4449 69 8 21 chr12 66533808 66534415 -54723115 - L1Md_F2 LINE L1 0 6582 5984 6 1092 10582 68 0 1 chr12 66534415 66535904 -54721626 - L1_Mm LINE L1 -2896 2987 1501 6 1092 388 240 73 0 chr12 66535907 66536003 -54721527 + ETnERV2-int LTR ERVK 7070 7172 -234 7 1092 4260 138 58 39 chr12 66536410 66537660 -54719870 - L1Md_F LINE L1 -4379 1504 238 7 1092 759 22 0 0 chr12 66537822 66537911 -54719619 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 7 1092 772 310 71 54 chr12 66537961 66538871 -54718659 - L1M2 LINE L1 -1446 4697 3772 7 1092 285 329 55 49 chr12 66539117 66539280 -54718250 - RSINE1 SINE B4 0 165 2 7 1092 276 30 0 0 chr12 66539318 66539351 -54718179 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1092 694 303 51 10 chr12 66539372 66539569 -54717961 - B3 SINE B2 -3 213 9 7 1092 1412 282 76 46 chr12 66539569 66540093 -54717437 - RMER19C LTR ERVK -2 609 70 7 1092 331 273 8 8 chr12 66540263 66540396 -54717134 - L1M3 LINE L1 -1447 4693 4561 7 1092 213 121 0 0 chr12 66541272 66541305 -54716225 + (TCC)n Simple_repeat Simple_repeat 1 33 0 7 1092 917 198 65 15 chr12 66541311 66541511 -54716019 - B3 SINE B2 -6 210 1 8 1092 1355 199 12 23 chr12 66542000 66542257 -54715273 - MTC LTR MaLR -9 412 159 8 1092 743 120 192 19 chr12 66542701 66542862 -54714668 - B2_Mm2 SINE B2 -6 189 1 8 1092 229 275 43 0 chr12 66543031 66543100 -54714430 - tRNA-Ala-GCY_ tRNA tRNA -3 72 1 8 1092 227 165 25 0 chr12 66543720 66543799 -54713731 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 8 1092 346 297 62 18 chr12 66544215 66544328 -54713202 + B3A SINE B2 75 192 -6 8 1092 620 246 89 21 chr12 66544362 66544553 -54712977 + MTE2a LTR MaLR 174 377 -2 8 1092 1972 188 46 13 chr12 66544756 66545144 -54712386 + RLTR11A LTR ERVK 1 401 -127 8 1092 1667 179 126 17 chr12 66545158 66545516 -54712014 + RMER10B LTR ERVL 2 398 0 8 1092 22 0 0 0 chr12 66547354 66547376 -54710154 + AT_rich Low_complexity Low_complexity 1 22 0 8 1092 453 302 16 0 chr12 66547546 66547672 -54709858 + ID_B1 SINE B4 86 213 -11 9 1092 330 45 0 0 chr12 66547672 66547716 -54709814 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1092 2614 76 87 0 chr12 66548344 66548712 -54708818 + MTB LTR MaLR 1 400 0 9 1092 23 33 0 0 chr12 66548790 66548820 -54708710 + AT_rich Low_complexity Low_complexity 1 30 0 9 1092 579 29 0 0 chr12 66549314 66549383 -54708147 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1092 7805 50 0 5 chr12 66550318 66551489 -54706041 - L1_Mus1 LINE L1 0 6567 5403 9 1092 266 305 98 16 chr12 66551494 66551687 -54705843 + L1M2 LINE L1 5529 5737 -575 9 1092 180 137 39 19 chr12 66551828 66551880 -54705650 + GA-rich Low_complexity Low_complexity 2 54 0 9 1092 395 208 26 78 chr12 66552459 66552574 -54704956 + ORR1D2 LTR MaLR 183 291 -79 9 1092 1724 160 113 70 chr12 66552575 66552945 -54704585 - ORR1B1 LTR MaLR -8 386 1 9 1092 290 259 23 12 chr12 66552945 66553031 -54704499 + ORR1D2 LTR MaLR 284 370 0 9 1092 2674 64 6 16 chr12 66553469 66553835 -54703695 + L1Md_F2 LINE L1 6218 6579 -3 1 1092 7822 39 1 7 chr12 66555450 66556632 -54700898 - L1Md_F2 LINE L1 0 6582 5408 1 1092 251 163 0 0 chr12 66557134 66557177 -54700353 - ORR1C2 LTR MaLR -2 382 340 1 1092 386 223 29 29 chr12 66557578 66557749 -54699781 + (TATAA)n Simple_repeat Simple_repeat 3 173 0 1 1092 257 230 3 0 chr12 66558592 66558648 -54698882 - ID4 SINE ID -73 79 23 1 1092 297 266 32 79 chr12 66558695 66558811 -54698719 - PB1 SINE Alu -10 139 10 1 1092 574 221 23 15 chr12 66558963 66559096 -54698434 + RLTR18B LTR ERVK 4 137 -375 1 1092 981 71 0 0 chr12 66559097 66559238 -54698292 - L1Md_F2 LINE L1 0 6582 6442 1 1092 19108 81 17 4 chr12 66559238 66562653 -54694877 - L1Md_F LINE L1 -1940 3943 480 1 1092 433 119 0 0 chr12 66562653 66562720 -54694810 - L1VL1 LINE L1 -6348 74 8 1 1092 1417 179 12 61 chr12 66562721 66563036 -54694494 + RLTR18 LTR ERVK 86 388 -228 1 1092 1744 147 21 68 chr12 66563049 66563385 -54694145 + ORR1A4 LTR MaLR 1 320 -9 1 1092 393 275 113 49 chr12 66563739 66563942 -54693588 - L1ME3B LINE L1 -98 6142 5927 1 1092 397 306 48 82 chr12 66564063 66564480 -54693050 - L1MC5 LINE L1 -567 7394 6992 1 1092 225 0 0 0 chr12 66564666 66564691 -54692839 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1092 21 36 0 0 chr12 66564764 66564792 -54692738 + AT_rich Low_complexity Low_complexity 1 28 0 1 1092 306 0 0 0 chr12 66565168 66565202 -54692328 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1092 303 135 0 0 chr12 66565381 66565433 -54692097 + L1_Mur2 LINE L1 210 261 -6451 1 1092 3307 139 43 8 chr12 66565433 66565969 -54691561 + Lx4A LINE L1 6499 7053 -5 1 1092 258 32 0 0 chr12 66565969 66566000 -54691530 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1 1092 285 342 122 39 chr12 66568078 66568341 -54689189 - L2a LINE L2 -274 3152 2869 1 1092 26 30 0 0 chr12 66568346 66568379 -54689151 + AT_rich Low_complexity Low_complexity 1 33 0 1 1092 269 274 20 59 chr12 66569352 66569453 -54688077 + MLT1A LTR MaLR 65 161 -213 1 1092 1036 281 14 7 chr12 66570668 66570951 -54686579 + B4 SINE B4 2 286 -6 1 1092 276 314 63 102 chr12 66571037 66571270 -54686260 - RSINE1 SINE B4 -15 277 85 1 1092 772 168 36 0 chr12 66571324 66571461 -54686069 - Lx9 LINE L1 -335 7309 7168 1 1092 314 198 58 11 chr12 66571462 66571549 -54685981 + Lx9 LINE L1 7544 7634 -10 1 1092 342 0 0 0 chr12 66571549 66571587 -54685943 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1092 749 204 0 49 chr12 66573425 66573569 -54683961 - B1_Mur4 SINE Alu -13 137 1 1 1092 641 262 115 30 chr12 66573825 66573990 -54683540 + ORR1D2 LTR MaLR 11 189 -181 1 1092 485 273 18 138 chr12 66574013 66574230 -54683300 + ORR1D2 LTR MaLR 169 359 0 1 1092 478 339 27 5 chr12 66574408 66574592 -54682938 - B3A SINE B2 -10 188 1 1 1092 449 320 0 16 chr12 66574645 66574772 -54682758 + B1F2 SINE Alu 12 136 -13 1 1092 353 286 18 72 chr12 66574875 66575041 -54682489 + MER58B DNA MER1_type 85 241 -100 1 1092 1484 249 165 78 chr12 66575042 66575617 -54681913 + RMER20B LTR ERVK 1 625 -2 1 1092 311 335 53 10 chr12 66575687 66575825 -54681705 + B3A SINE B2 2 148 -47 1 1092 399 262 189 0 chr12 66575931 66576053 -54681477 + B4A SINE B4 2 146 -146 1 1092 444 262 205 12 chr12 66576595 66576761 -54680769 - B3 SINE B2 -17 199 2 1 1092 3270 183 78 25 chr12 66576888 66577003 -54680527 - RMER1A Other Other -4 1026 911 1 1092 297 51 0 0 chr12 66577003 66577042 -54680488 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1092 3270 183 78 25 chr12 66577042 66577644 -54679886 - RMER1A Other Other -120 910 273 1 1092 459 248 115 13 chr12 66577611 66577761 -54679769 - RMER1B Other Other -568 498 353 1 1092 201 190 69 0 chr12 66577775 66577833 -54679697 + G-rich Low_complexity Low_complexity 4 65 0 1 1092 469 303 100 13 chr12 66578306 66578697 -54678833 - L1MC5 LINE L1 -486 7475 7051 1 1092 501 264 154 32 chr12 66579027 66579215 -54678315 - MTE2a LTR MaLR -2 377 167 1 1092 795 191 77 92 chr12 66579258 66579454 -54678076 - RLTR33 LTR ERVK -485 193 1 1 1092 267 219 97 40 chr12 66579605 66579729 -54677801 + B2_Mm2 SINE B2 61 191 -4 1 1092 247 316 52 139 chr12 66579723 66579824 -54677706 - MTE2a LTR MaLR -213 166 62 1 1092 1559 127 17 115 chr12 66579824 66580181 -54677349 + RLTRETN_Mm LTR ERVK 1 322 0 1 1092 247 316 52 139 chr12 66580181 66580252 -54677278 - MTE2a LTR MaLR -318 61 9 1 1092 309 26 0 0 chr12 66580369 66580407 -54677123 + (TTAGG)n Simple_repeat Simple_repeat 1 38 0 1 1092 222 315 93 45 chr12 66581162 66581338 -54676192 + MIR3 SINE MIR 34 204 -4 1 1092 183 250 19 19 chr12 66581910 66581963 -54675567 + L3b LINE CR1 310 362 -120 1 1092 302 226 103 83 chr12 66582739 66582884 -54674646 + Charlie23a DNA MER1_type 34 181 -158 1 1092 708 74 0 0 chr12 66583315 66583410 -54674120 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 1 1092 418 286 18 0 chr12 66583412 66583524 -54674006 - ID_B1 SINE B4 -3 221 108 1 1092 546 91 0 0 chr12 66583635 66583712 -54673818 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1092 693 215 20 40 chr12 66583721 66583871 -54673659 - B1_Mur3 SINE Alu 0 149 3 1 1092 256 282 32 119 chr12 66583871 66583921 -54673609 - MT2B2 LTR ERVL -428 156 123 1 1092 660 175 71 0 chr12 66583921 66584047 -54673483 - RLTR21 LTR ERVK 0 1572 1438 1 136 4787 204 71 50 chr12 66584058 66585246 -54672284 - RMER12B LTR ERVK -192 1212 1 1 1093 1494 138 0 9 chr12 66585605 66585832 -54671698 + URR1A DNA MER1_type 2 226 0 1 1093 255 31 0 0 chr12 66586173 66586205 -54671325 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1093 32 26 0 0 chr12 66586305 66586344 -54671186 + AT_rich Low_complexity Low_complexity 1 39 0 1 1093 621 316 117 38 chr12 66586516 66586740 -54670790 - B4A SINE B4 -5 287 42 1 1093 2929 46 0 0 chr12 66586740 66587086 -54670444 - ORR1A0 LTR MaLR 0 346 1 1 1093 621 316 117 38 chr12 66587086 66587127 -54670403 - B4A SINE B4 -251 41 1 1 1093 234 0 0 0 chr12 66587256 66587282 -54670248 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1093 2740 38 0 0 chr12 66587658 66588000 -54669530 + L1Md_F2 LINE L1 5228 5569 -314 1 1093 8075 41 0 0 chr12 66588001 66588972 -54668558 + L1Md_F2 LINE L1 5610 6580 -2 1 1093 748 286 45 15 chr12 66589652 66589918 -54667612 + B4A SINE B4 1 274 -18 1 1093 1856 187 34 49 chr12 66590654 66591064 -54666466 - RMER1B Other Other -6 1060 657 1 1093 1827 194 81 75 chr12 66591067 66591581 -54665949 - RMER20B LTR ERVK -25 602 30 1 1093 266 206 0 14 chr12 66592937 66593011 -54664519 + (TATG)n Simple_repeat Simple_repeat 4 76 0 1 1093 556 267 152 35 chr12 66593044 66593215 -54664315 - B4A SINE B4 0 292 102 1 1093 336 211 21 43 chr12 66593491 66593585 -54663945 - MLT1A1 LTR MaLR -23 385 294 1 1093 270 302 65 17 chr12 66593977 66594102 -54663428 - B1F2 SINE Alu -7 142 14 1 1093 335 23 0 22 chr12 66594466 66594511 -54663019 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1093 244 330 56 19 chr12 66595060 66595168 -54662362 + MLT1H2 LTR MaLR 74 185 -304 1 1093 2597 153 15 50 chr12 66595464 66595926 -54661604 + RLTR41 LTR ERV1 1 446 0 1 1093 485 119 12 0 chr12 66596055 66596139 -54661391 - Lx9 LINE L1 -604 7040 6956 1 1093 606 275 109 78 chr12 66596326 66596685 -54660845 - RLTR26 LTR ERVK -176 466 97 1 1093 1749 215 17 60 chr12 66596759 66597224 -54660306 - Lx9 LINE L1 -684 6960 6516 1 1093 264 31 0 0 chr12 66599195 66599227 -54658303 - U2 snRNA snRNA -153 35 4 1 1093 1747 179 0 0 chr12 66599788 66600124 -54657406 - L1_Mur2 LINE L1 -725 5152 4817 1 1093 6751 121 8 16 chr12 66600116 66601676 -54655854 + Lx2 LINE L1 5092 6645 -352 1 1093 1295 136 13 18 chr12 66601674 66601898 -54655632 + Lx2 LINE L1 6775 6997 0 1 1093 206 83 56 0 chr12 66602369 66602405 -54655125 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1093 378 0 0 0 chr12 66602689 66602731 -54654799 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1093 183 80 0 0 chr12 66603011 66603036 -54654494 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1093 1103 71 0 21 chr12 66603379 66603522 -54654008 - B1_Mus1 SINE Alu -7 141 2 1 1093 4944 30 0 7 chr12 66603526 66604107 -54653423 + L1Md_F3 LINE L1 5994 6570 -14 1 1093 207 264 102 11 chr12 66604347 66604435 -54653095 + L2a LINE L2 3325 3420 -6 1 1093 656 43 11 0 chr12 66604435 66604527 -54653003 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1093 481 96 11 11 chr12 66604527 66604622 -54652908 + (GA)n Simple_repeat Simple_repeat 1 95 0 1 1093 852 141 0 0 chr12 66605061 66605210 -54652320 + (TCCC)n Simple_repeat Simple_repeat 3 151 0 1 1093 1773 189 134 8 chr12 66605211 66605585 -54651945 + MTC LTR MaLR 1 421 0 1 1093 195 259 98 76 chr12 66606047 66606139 -54651391 - L2 LINE L2 -1629 1790 1697 1 1093 566 225 199 132 chr12 66606823 66607095 -54650435 + B4 SINE B4 3 292 0 1 1093 3560 15 0 0 chr12 66607136 66607532 -54649998 + MTA_Mm LTR MaLR 1 396 0 1 1093 27 49 0 0 chr12 66607832 66607873 -54649657 + AT_rich Low_complexity Low_complexity 1 41 0 1 1093 3254 26 18 5 chr12 66607910 66608295 -54649235 - RLTR10 LTR ERVK 0 390 1 1 1093 15578 23 23 0 chr12 66608297 66608922 -54648608 - RLTR10-int LTR ERVK -3 1984 1359 1 1093 270 0 0 0 chr12 66608922 66608952 -54648578 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1093 15578 23 23 0 chr12 66608952 66610227 -54647303 - RLTR10-int LTR ERVK -629 1358 42 1 1093 691 75 11 0 chr12 66610237 66610330 -54647200 - RLTR10 LTR ERVK 0 390 297 1 1093 1266 212 78 64 chr12 66610768 66611176 -54646354 - RMER10A LTR ERVL -17 425 12 1 1093 258 32 0 0 chr12 66611231 66611262 -54646268 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1093 1169 43 0 0 chr12 66611262 66611400 -54646130 - B1_Mm SINE Alu -8 139 2 1 1093 1634 58 0 0 chr12 66612900 66613108 -54644422 - L1_Mus1 LINE L1 0 6567 6360 1 1093 1486 47 0 0 chr12 66613110 66613303 -54644227 + L1_Mus1 LINE L1 5587 5779 -788 2 1093 821 159 23 0 chr12 66613318 66613450 -54644080 - B1_Mus1 SINE Alu -10 138 4 2 1093 326 80 20 0 chr12 66613636 66613686 -54643844 + (TTG)n Simple_repeat Simple_repeat 2 52 0 2 1093 230 184 0 0 chr12 66614048 66614086 -54643444 + MER74C LTR ERVL 2 39 -421 2 1093 389 351 70 54 chr12 66614526 66614899 -54642631 + L2 LINE L2 2317 2695 -724 2 1093 262 198 32 32 chr12 66615107 66615201 -54642329 + A-rich Low_complexity Low_complexity 3 96 0 2 1093 778 37 52 7 chr12 66615203 66615339 -54642191 + (CA)n Simple_repeat Simple_repeat 1 142 0 2 1093 838 306 0 4 chr12 66615339 66615592 -54641938 - Lx7 LINE L1 -388 7308 7057 2 1093 1284 297 122 17 chr12 66615637 66616094 -54641436 - Lx8 LINE L1 -6 7467 6985 2 1093 297 0 0 0 chr12 66616094 66616127 -54641403 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1093 351 0 0 0 chr12 66616127 66616165 -54641365 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1093 1284 297 122 17 chr12 66616165 66616281 -54641249 - Lx8 LINE L1 -489 6984 6834 2 1093 204 324 60 93 chr12 66617456 66617606 -54639924 - MIRc SINE MIR -78 190 46 2 1093 2091 182 31 31 chr12 66617618 66618004 -54639526 + ORR1B1 LTR MaLR 1 386 -8 2 1093 1835 252 20 10 chr12 66618563 66618975 -54638555 + MTD LTR MaLR 1 405 -14 2 1093 189 0 0 0 chr12 66619289 66619310 -54638220 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1093 571 341 87 54 chr12 66619310 66619586 -54637944 - B4A SINE B4 -6 286 2 2 1093 257 268 61 0 chr12 66620055 66620137 -54637393 - PB1D7 SINE Alu 0 120 34 2 1093 277 299 116 30 chr12 66620554 66621024 -54636506 - L1ME1 LINE L1 -75 6104 5588 2 1093 270 194 56 0 chr12 66621522 66621594 -54635936 - L1MC LINE L1 -913 5233 5158 2 1093 4245 165 59 65 chr12 66621714 66622609 -54634921 + RMER19B LTR ERVK 1 890 -12 2 1093 320 342 78 16 chr12 66622625 66622946 -54634584 - L1ME1 LINE L1 -1146 5000 4660 2 1093 239 231 0 0 chr12 66623217 66623269 -54634261 - ID_B1 SINE B4 -11 213 162 2 1093 347 336 0 0 chr12 66624257 66624373 -54633157 - Tigger5 DNA MER2_type 0 2406 2291 2 1093 4749 39 3 0 chr12 66624909 66625479 -54632051 + L1Md_T LINE L1 6011 6582 0 2 1093 225 221 0 68 chr12 66627013 66627086 -54630444 + CT-rich Low_complexity Low_complexity 2 69 0 2 1093 308 266 32 10 chr12 66627213 66627358 -54630172 - L1MA4A LINE L1 -1542 5931 5782 2 1093 2197 129 3 0 chr12 66628009 66628335 -54629195 + ORR1A2 LTR MaLR 1 327 0 2 1093 762 176 75 50 chr12 66628574 66628735 -54628795 - MTD LTR MaLR -254 165 1 2 1093 315 306 94 42 chr12 66628736 66628927 -54628603 - L1M4 LINE L1 -1003 5143 4943 2 1093 581 115 10 0 chr12 66628949 66629045 -54628485 + (TCC)n Simple_repeat Simple_repeat 1 97 0 2 1093 211 211 0 0 chr12 66629059 66629097 -54628433 - PB1D7 SINE Alu -17 103 66 2 1093 290 264 81 31 chr12 66629206 66629366 -54628164 - L1M4 LINE L1 -1283 4863 4696 2 1093 271 260 0 0 chr12 66629500 66629573 -54627957 - L1MA4A LINE L1 -1592 4551 4479 2 1093 23 33 0 0 chr12 66629858 66629888 -54627642 + AT_rich Low_complexity Low_complexity 1 30 0 2 1093 945 259 60 32 chr12 66629949 66630264 -54627266 - Lx8 LINE L1 -93 7380 7057 2 1093 1337 194 57 13 chr12 66630924 66631238 -54626292 - Lx5 LINE L1 0 7050 6723 2 1093 470 123 40 14 chr12 66631238 66631312 -54626218 + U6 snRNA snRNA 3 78 -29 2 1093 381 117 0 0 chr12 66632621 66632681 -54624849 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1093 207 259 73 18 chr12 66632892 66632947 -54624583 - MIRb SINE MIR -90 178 121 2 1093 426 281 111 31 chr12 66633007 66633334 -54624196 + Lx8 LINE L1 5942 6269 -1204 2 1093 193 367 13 0 chr12 66633336 66633415 -54624115 - MIRm SINE MIR -128 148 69 2 1093 23 54 0 0 chr12 66634023 66634060 -54623470 + AT_rich Low_complexity Low_complexity 1 37 0 2 1093 249 300 22 11 chr12 66634454 66634545 -54622985 + L2a LINE L2 3249 3340 -86 2 1093 2087 205 44 56 chr12 66635708 66636226 -54621304 - RMER1B Other Other -1 1065 554 2 1093 605 251 94 6 chr12 66636263 66636443 -54621087 - RMER1B Other Other -826 240 45 2 1093 796 322 110 22 chr12 66638140 66638604 -54618926 - MLT1D LTR MaLR 0 505 1 2 1093 5316 70 5 3 chr12 66639501 66640470 -54617060 + L1_Mus1 LINE L1 5069 6040 -527 2 1093 345 228 116 68 chr12 66641057 66641264 -54616266 + L1M5 LINE L1 2817 3033 -3113 2 1093 465 62 0 0 chr12 66641600 66641665 -54615865 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1093 960 291 54 11 chr12 66641934 66642195 -54615335 - B4A SINE B4 -4 288 17 2 1093 394 324 63 63 chr12 66642266 66642536 -54614994 + MLT1A LTR MaLR 1 270 -120 2 1093 2437 286 62 54 chr12 66642620 66643881 -54613649 - Lx9 LINE L1 -31 7613 6343 2 1093 21 0 0 0 chr12 66644343 66644364 -54613166 + AT_rich Low_complexity Low_complexity 1 21 0 2 1093 261 0 0 0 chr12 66644501 66644530 -54613000 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1093 321 360 44 34 chr12 66645307 66645511 -54612019 + RMER4A LTR ERVK 8 213 -253 2 1093 23 0 0 0 chr12 66645684 66645707 -54611823 + AT_rich Low_complexity Low_complexity 1 23 0 2 1093 1030 305 54 32 chr12 66646696 66647065 -54610465 - MTE2b LTR MaLR -2 377 1 2 1093 198 317 108 10 chr12 66647340 66647442 -54610088 + L3b LINE CR1 122 233 -249 2 1093 213 276 9 45 chr12 66648342 66648413 -54609117 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1093 351 65 0 0 chr12 66648413 66648459 -54609071 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1093 231 250 0 27 chr12 66648459 66648498 -54609032 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 2 1093 204 182 0 0 chr12 66648498 66648542 -54608988 + GA-rich Low_complexity Low_complexity 2 45 0 2 1093 267 315 85 51 chr12 66648680 66648857 -54608673 + MIR SINE MIR 10 192 -70 2 1093 294 329 0 0 chr12 66649010 66649080 -54608450 - ID4_ SINE ID 0 83 14 2 1093 242 358 0 15 chr12 66649020 66649088 -54608442 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 2 1093 980 249 118 27 chr12 66649653 66649991 -54607539 + ORR1D2 LTR MaLR 2 370 0 2 1093 911 171 189 22 chr12 66650198 66650383 -54607147 - B3 SINE B2 0 216 1 2 1093 287 180 0 0 chr12 66650705 66650755 -54606775 - B1_Mur3 SINE Alu -13 136 87 2 1093 438 108 0 0 chr12 66651140 66651205 -54606325 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1093 618 216 58 36 chr12 66651205 66651344 -54606186 - B1_Mus1 SINE Alu -5 143 2 2 1093 277 304 160 11 chr12 66651821 66651990 -54605540 - MTEb LTR MaLR -13 366 156 2 1093 332 301 71 82 chr12 66653681 66653851 -54603679 - MLT1A LTR MaLR -6 368 201 2 1093 312 287 156 120 chr12 66653982 66654283 -54603247 + LTR89 LTR ERVL? 13 324 -555 2 1093 332 308 48 0 chr12 66654517 66654621 -54602909 + LTR89 LTR ERVL? 698 806 -73 2 1093 360 0 0 0 chr12 66655072 66655112 -54602418 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1093 609 253 14 7 chr12 66655127 66655274 -54602256 + B1F SINE Alu 2 149 0 2 1093 261 302 65 40 chr12 66656203 66656327 -54601203 + MIRb SINE MIR 32 158 -110 2 1093 536 345 52 30 chr12 66656532 66656801 -54600729 + MLT1A0 LTR MaLR 1 275 -90 2 1093 855 301 24 3 chr12 66657252 66657628 -54599902 - L1MA6 LINE L1 -369 5931 5548 2 1093 624 27 0 0 chr12 66657730 66657804 -54599726 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1093 4384 53 0 21 chr12 66658012 66658594 -54598936 - L1Md_F2 LINE L1 0 6582 6032 2 1093 303 292 80 40 chr12 66658684 66658834 -54598696 - HAL1-3A_ME LINE L1 -421 2437 2282 2 1093 23 0 0 0 chr12 66661306 66661329 -54596201 + AT_rich Low_complexity Low_complexity 1 23 0 2 1093 25 0 0 0 chr12 66661523 66661548 -54595982 + AT_rich Low_complexity Low_complexity 1 25 0 2 1093 258 113 0 86 chr12 66661548 66661606 -54595924 - RMER1A Other Other -7 1023 971 2 1093 2743 279 69 11 chr12 66661606 66662606 -54594924 - RMER1A Other Other -191 839 1 2 1093 1169 252 88 6 chr12 66662590 66662933 -54594597 - RMER1B Other Other -651 415 45 2 1093 7718 77 28 60 chr12 66663559 66664852 -54592678 - Lx3_Mus LINE L1 -168 6841 5591 2 1093 478 129 0 47 chr12 66664856 66664962 -54592568 + Lx3_Mus LINE L1 6909 7009 0 2 1093 842 101 18 42 chr12 66664979 66665144 -54592386 + Lx3_Mus LINE L1 6838 6998 -11 2 1093 3678 103 44 1 chr12 66665164 66665934 -54591596 + L1_Mus4 LINE L1 5360 6160 -476 2 1093 2075 203 60 26 chr12 66665980 66666480 -54591050 + RLTR11A LTR ERVK 8 524 -4 2 1093 1285 225 88 7 chr12 66667424 66667719 -54589811 + RMER1B Other Other 45 363 -703 2 1093 2791 124 30 11 chr12 66667728 66668169 -54589361 + L1_Mus4 LINE L1 6186 6634 -2 2 1093 285 250 42 0 chr12 66668183 66668255 -54589275 - MLT2B2 LTR ERVL -435 80 6 2 1093 511 346 25 29 chr12 66668263 66668507 -54589023 + MLT1A0 LTR MaLR 117 359 -6 2 1093 227 369 82 41 chr12 66670415 66670562 -54586968 + MLT1K LTR MaLR 124 276 -319 2 1093 369 0 0 0 chr12 66670675 66670716 -54586814 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1093 216 135 0 0 chr12 66670716 66670753 -54586777 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1093 1010 181 116 0 chr12 66670840 66671039 -54586491 + URR1A DNA MER1_type 5 226 0 2 1093 689 23 0 0 chr12 66671263 66671351 -54586179 - B1_Mus2 SINE Alu -24 123 36 2 1093 599 319 34 10 chr12 66671998 66672289 -54585241 + L1MA8 LINE L1 5981 6278 -13 2 1093 256 232 119 20 chr12 66672309 66672410 -54585120 + Lx9 LINE L1 6367 6477 -1167 2 1093 1372 299 50 22 chr12 66672531 66673124 -54584406 + Lx9 LINE L1 6359 7136 -508 2 1093 24 0 0 0 chr12 66673363 66673387 -54584143 + AT_rich Low_complexity Low_complexity 1 24 0 2 1093 384 234 104 71 chr12 66673396 66673608 -54583922 - Lx8 LINE L1 -2 7471 7253 2 1093 3281 43 2 8 chr12 66673660 66674058 -54583472 + MTA_Mm LTR MaLR 1 396 0 3 1093 376 278 135 45 chr12 66674340 66674562 -54582968 - L1MB8 LINE L1 -203 5975 5733 3 1093 6197 116 19 37 chr12 66674719 66675693 -54581837 + RMER17B LTR ERVK 1 957 -1 3 1093 2839 110 18 56 chr12 66675693 66676194 -54581336 + RLTR45 LTR ERVK 1 482 0 3 1093 859 284 5 0 chr12 66676259 66676463 -54581067 - B3 SINE B2 -10 206 2 3 1093 341 282 132 21 chr12 66676481 66676954 -54580576 - L1MB8 LINE L1 -2320 3826 3310 3 1093 329 286 89 67 chr12 66676962 66677097 -54580433 - L1MB8 LINE L1 -2753 3393 3256 3 1093 303 28 0 0 chr12 66677375 66677411 -54580119 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1093 396 0 0 0 chr12 66677412 66677456 -54580074 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1093 1701 133 23 79 chr12 66677456 66677798 -54579732 - ORR1A4 LTR MaLR -1 328 6 3 1093 958 39 8 15 chr12 66677809 66677941 -54579589 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 3 1093 246 81 0 0 chr12 66677949 66677986 -54579544 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1093 427 242 172 0 chr12 66678020 66678148 -54579382 + MTEa LTR MaLR 181 330 -49 3 1093 24 53 0 0 chr12 66678180 66678218 -54579312 + AT_rich Low_complexity Low_complexity 1 38 0 3 1093 445 98 12 24 chr12 66678221 66678305 -54579225 - Lx9 LINE L1 -60 7584 7502 3 1093 202 116 22 44 chr12 66678486 66678531 -54578999 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 3 1093 280 290 41 41 chr12 66678899 66679093 -54578437 - L1M2 LINE L1 -750 5547 5354 3 1093 611 67 11 0 chr12 66679164 66679253 -54578277 + (TCCC)n Simple_repeat Simple_repeat 1 90 0 3 1093 634 237 15 7 chr12 66679279 66679415 -54578115 - B1F SINE Alu -11 138 2 3 1093 507 282 131 99 chr12 66679426 66679675 -54577855 - L1M2 LINE L1 -790 5353 5116 3 1093 1937 216 37 2 chr12 66679675 66680078 -54577452 + MTC LTR MaLR 5 421 0 3 1093 507 282 131 99 chr12 66680078 66680293 -54577237 - L1M2 LINE L1 -1028 5115 4874 3 1093 26 50 0 0 chr12 66680316 66680356 -54577174 + AT_rich Low_complexity Low_complexity 1 40 0 3 1093 24251 140 56 5 chr12 66680371 66686102 -54571428 + L1_Mus3 LINE L1 611 6636 -2 3 1093 702 307 32 11 chr12 66686656 66686878 -54570652 + MLT1A0 LTR MaLR 139 406 -2 3 1093 377 288 26 18 chr12 66687906 66688019 -54569511 + Lx8 LINE L1 6680 6793 -680 3 1093 433 304 56 42 chr12 66688052 66688265 -54569265 + Lx8 LINE L1 7246 7461 -12 3 1093 3893 182 32 24 chr12 66688513 66689321 -54568209 + RMER12 LTR ERVK 1 815 -507 3 1093 213 39 0 0 chr12 66689327 66689353 -54568177 + (TCCG)n Simple_repeat Simple_repeat 3 28 0 3 1093 468 91 0 0 chr12 66689351 66689417 -54568113 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 3 1093 1275 261 104 27 chr12 66689427 66689926 -54567604 + RMER12 LTR ERVK 755 1172 -150 3 1093 312 323 135 16 chr12 66692233 66692359 -54565171 - RSINE1 SINE B4 0 165 25 3 1093 1155 274 81 34 chr12 66692674 66693059 -54564471 - MTD LTR MaLR -16 403 1 3 1093 1191 293 53 108 chr12 66693063 66693190 -54564340 - MTD-int LTR MaLR -12 1246 1117 3 1093 933 169 0 0 chr12 66693190 66693338 -54564192 + B1_Mur4 SINE Alu 2 149 -1 3 1093 1191 293 53 108 chr12 66693338 66693357 -54564173 - MTD-int LTR MaLR -142 1116 1111 3 1093 212 0 36 0 chr12 66693357 66693385 -54564145 + (CAACC)n Simple_repeat Simple_repeat 4 32 0 3 1093 1191 313 94 102 chr12 66693385 66694369 -54563161 - MTD-int LTR MaLR -148 1110 1 3 1093 4049 171 61 25 chr12 66694387 66695250 -54562280 - RLTR13D6 LTR ERVK -33 869 1 3 1093 771 261 130 30 chr12 66695253 66695584 -54561946 - MTD LTR MaLR -31 376 1 3 1093 1030 92 26 0 chr12 66696060 66696261 -54561269 - L1Md_F2 LINE L1 0 6582 6403 3 1093 21 57 0 0 chr12 66697505 66697540 -54559990 + AT_rich Low_complexity Low_complexity 1 35 0 3 1093 412 305 91 68 chr12 66697617 66697662 -54559868 - B3A SINE B2 -15 180 131 3 1093 426 79 0 0 chr12 66697662 66697725 -54559805 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1093 412 325 58 13 chr12 66697725 66697855 -54559675 - B3A SINE B2 -59 139 2 3 1093 28 0 0 0 chr12 66698686 66698714 -54558816 + AT_rich Low_complexity Low_complexity 1 28 0 3 1093 1054 192 57 46 chr12 66699028 66699311 -54558219 - Lx7 LINE L1 -52 7644 7359 3 1093 41 21 0 0 chr12 66699327 66699375 -54558155 + AT_rich Low_complexity Low_complexity 1 48 0 3 1093 358 256 35 0 chr12 66699379 66699465 -54558065 - Lx7 LINE L1 -338 7358 7270 3 1093 492 209 154 15 chr12 66699484 66699620 -54557910 + Tigger5 DNA MER2_type 2172 2326 -80 3 1093 597 28 0 0 chr12 66699687 66699758 -54557772 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 3 1093 261 324 20 68 chr12 66699890 66700036 -54557494 + MER5A DNA MER1_type 45 183 -6 3 1093 616 274 23 18 chr12 66700642 66700813 -54556717 + MER5B DNA MER1_type 1 172 -6 3 1093 344 48 47 16 chr12 66702357 66702375 -54555155 + (TTC)n Simple_repeat Simple_repeat 1 19 0 3 1093 1326 78 0 0 chr12 66702375 66702555 -54554975 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 3 1093 344 48 47 16 chr12 66702555 66702600 -54554930 + (TTC)n Simple_repeat Simple_repeat 2 48 0 3 1093 207 0 0 0 chr12 66702713 66702736 -54554794 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1093 192 40 0 0 chr12 66702762 66702787 -54554743 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 1093 188 318 0 0 chr12 66702795 66702839 -54554691 - MER5B DNA MER1_type -133 45 2 3 1093 768 288 43 179 chr12 66703438 66704131 -54553399 + MT2B LTR ERVL 1 599 -2 3 1093 456 277 46 14 chr12 66704211 66704380 -54553150 - B3A SINE B2 -19 176 1 3 1093 626 321 73 55 chr12 66705463 66705806 -54551724 + MLT1A0 LTR MaLR 12 360 -5 3 1093 21 0 0 0 chr12 66705891 66705912 -54551618 + AT_rich Low_complexity Low_complexity 1 21 0 3 1093 214 298 18 0 chr12 66706052 66706109 -54551421 - ID2 SINE ID 0 83 26 3 1093 203 79 0 26 chr12 66706110 66706149 -54551381 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 3 1093 1059 103 7 0 chr12 66706150 66706295 -54551235 - B1_Mus2 SINE Alu -1 146 1 3 1093 189 0 0 0 chr12 66708459 66708480 -54549050 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1093 343 256 37 0 chr12 66708534 66708616 -54548914 + MIR SINE MIR 175 259 -3 3 1093 2263 206 35 23 chr12 66708679 66709195 -54548335 - L1VL4 LINE L1 -5586 716 195 3 1093 216 0 0 0 chr12 66709328 66709352 -54548178 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1093 1477 226 125 19 chr12 66709352 66709713 -54547817 + MTD LTR MaLR 21 419 0 3 1093 3395 73 75 1 chr12 66710366 66711030 -54546500 - L1_Mus1 LINE L1 -514 6053 5357 3 1093 8256 39 12 0 chr12 66711048 66712445 -54545085 - L1Md_F2 LINE L1 -1 6581 5174 3 1093 3835 69 0 0 chr12 66712445 66712926 -54544604 + L1_Mus1 LINE L1 6087 6567 0 3 1093 2775 214 61 43 chr12 66713074 66713914 -54543616 - RLTR13A LTR ERVK 0 855 1 3 1093 192 316 92 42 chr12 66714070 66714212 -54543318 - L2 LINE L2 -602 2817 2669 3 1093 1194 274 45 20 chr12 66714456 66714810 -54542720 + ORR1D2 LTR MaLR 6 368 -2 3 1093 405 0 0 0 chr12 66715582 66715627 -54541903 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 136 504 0 0 0 chr12 66715627 66715682 -54541848 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1094 332 368 100 9 chr12 66716279 66716509 -54541021 - MER68 LTR ERVL -45 518 268 3 1094 23 0 0 0 chr12 66717092 66717115 -54540415 + AT_rich Low_complexity Low_complexity 1 23 0 3 1094 427 335 50 6 chr12 66717408 66717567 -54539963 + MER5A1 DNA MER1_type 1 166 0 3 1094 897 242 186 4 chr12 66717852 66718121 -54539409 - MTD LTR MaLR 0 419 102 3 1094 268 157 259 24 chr12 66718543 66718628 -54538902 - MTD LTR MaLR -308 111 7 3 1094 6011 13 0 0 chr12 66719362 66720065 -54537465 - L1Md_T LINE L1 0 6582 5904 3 1094 207 0 0 0 chr12 66720168 66720191 -54537339 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1094 698 310 27 81 chr12 66720892 66721187 -54536343 - ORR1E LTR MaLR -80 279 1 3 1094 198 311 73 36 chr12 66722012 66722149 -54535381 + MIR SINE MIR 93 234 -28 3 1094 3463 52 0 0 chr12 66722349 66722842 -54534688 - L1Md_T LINE L1 0 6582 6157 3 1094 240 319 10 62 chr12 66723361 66723458 -54534072 + Tigger5 DNA MER2_type 18 109 -2297 3 1094 263 333 0 0 chr12 66723498 66723573 -54533957 + Tigger5 DNA MER2_type 2332 2406 0 3 1094 25 65 0 0 chr12 66724540 66724586 -54532944 + AT_rich Low_complexity Low_complexity 1 46 0 3 1094 309 194 47 31 chr12 66724591 66724655 -54532875 + ID4_ SINE ID 5 69 -14 3 1094 842 310 160 12 chr12 66724903 66725372 -54532158 - L1MA9 LINE L1 -3 6309 5795 3 1094 378 0 0 0 chr12 66725372 66725414 -54532116 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1094 842 309 126 8 chr12 66725414 66725633 -54531897 - L1MA9 LINE L1 -518 5794 5508 3 1094 262 259 24 12 chr12 66725648 66725730 -54531800 + (CATA)n Simple_repeat Simple_repeat 2 84 0 3 1094 577 277 210 21 chr12 66725738 66726452 -54531078 - L1MA9 LINE L1 -700 5468 4617 3 1094 6795 108 18 44 chr12 66726477 66727600 -54529930 - Lx3A LINE L1 -5 6976 5883 3 1094 310 338 30 42 chr12 66727604 66727771 -54529759 - L1MA9 LINE L1 -1756 4387 4223 3 1094 239 175 31 31 chr12 66727771 66727836 -54529694 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 3 1094 260 252 85 25 chr12 66727943 66728061 -54529469 - L1MA9 LINE L1 -3271 2869 2745 3 1094 22 35 0 0 chr12 66728237 66728266 -54529264 + AT_rich Low_complexity Low_complexity 1 29 0 3 1094 967 303 96 43 chr12 66728743 66729439 -54528091 - L1M3c LINE L1 -3221 3155 2423 3 1094 1333 212 51 3 chr12 66729434 66729747 -54527783 - L1_Mur3 LINE L1 -916 4964 4637 3 1094 215 290 16 0 chr12 66729749 66729811 -54527719 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1094 306 266 90 35 chr12 66729831 66729975 -54527555 - L1M3c LINE L1 -3962 2422 2271 3 1094 330 277 25 82 chr12 66730595 66730717 -54526813 - L1M3c LINE L1 -5111 1202 1088 3 1094 467 286 0 40 chr12 66731166 66731290 -54526240 + ID_B1 SINE B4 104 222 -2 3 1094 830 248 61 88 chr12 66731988 66732364 -54525166 + Lx7 LINE L1 7209 7574 -122 3 1094 500 16 31 0 chr12 66732376 66732440 -54525090 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 3 1094 7824 119 41 16 chr12 66732447 66734194 -54523336 - Lx3_Mus LINE L1 -19 6990 5191 3 1094 2774 45 0 3 chr12 66734194 66734532 -54522998 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1094 55966 20 8 12 chr12 66734532 66741032 -54516498 + IAPEz-int LTR ERVK 8 6481 0 3 1094 2774 45 0 3 chr12 66741032 66741370 -54516160 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1094 17828 177 18 77 chr12 66741370 66745182 -54512348 - Lx3_Mus LINE L1 -690 5187 1632 3 1094 1746 223 81 98 chr12 66745182 66745724 -54511806 + RMER16 LTR ERVK 1 533 0 3 1094 17828 149 35 29 chr12 66745724 66747025 -54510505 - Lx3_Mus LINE L1 -4246 1631 3 3 1094 544 198 16 16 chr12 66747032 66747160 -54510370 + Lx7 LINE L1 7569 7696 0 3 1094 22 35 0 0 chr12 66747489 66747518 -54510012 + AT_rich Low_complexity Low_complexity 1 29 0 3 1094 277 330 93 9 chr12 66748756 66748982 -54508548 - L1M4 LINE L1 -323 5855 5611 3 1094 535 0 0 78 chr12 66749230 66749333 -54508197 + (TCTCC)n Simple_repeat Simple_repeat 2 96 0 3 1094 877 187 0 25 chr12 66749333 66749614 -54507916 + CT-rich Low_complexity Low_complexity 1 273 0 3 1094 2729 74 0 6 chr12 66750344 66750709 -54506821 + L1_Mus1 LINE L1 6203 6565 -2 4 1094 261 0 0 0 chr12 66750715 66750744 -54506786 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1094 24 0 0 0 chr12 66751045 66751069 -54506461 + AT_rich Low_complexity Low_complexity 1 24 0 4 1094 251 283 44 62 chr12 66751411 66751524 -54506006 - Tigger5 DNA MER2_type -2 2404 2294 4 1094 233 110 27 27 chr12 66751591 66751666 -54505864 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 4 1094 632 236 9 70 chr12 66752511 66752748 -54504782 + ORR1B1 LTR MaLR 1 210 -168 4 1094 3269 158 31 6 chr12 66752748 66753397 -54504133 - L1_Mur2 LINE L1 -2222 3655 2991 4 1094 1396 156 12 8 chr12 66753402 66753642 -54503888 - Lx2 LINE L1 -3 6994 6754 4 1094 1474 126 27 0 chr12 66753642 66753865 -54503665 + Lx2 LINE L1 6464 6692 -305 4 1094 1050 202 4 31 chr12 66753867 66754015 -54503515 - L1_Mur2 LINE L1 -2876 3001 2858 4 1094 600 14 0 0 chr12 66754015 66754084 -54503446 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 4 1094 1050 202 4 31 chr12 66754084 66754190 -54503340 - L1_Mur2 LINE L1 -3020 2857 2754 4 1094 907 265 94 55 chr12 66754350 66754365 -54503165 + MTD LTR MaLR 1 15 -404 4 1094 378 0 0 0 chr12 66754365 66754407 -54503123 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1094 907 265 94 55 chr12 66754407 66754794 -54502736 + MTD LTR MaLR 16 418 -1 4 1094 215 388 16 0 chr12 66755492 66755613 -54501917 - MER91B DNA Tip100 -43 147 25 4 1094 588 29 0 0 chr12 66755856 66755926 -54501604 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 4 1094 284 301 48 10 chr12 66756522 66756626 -54500904 + ORR1B1 LTR MaLR 272 379 0 4 1094 228 323 0 0 chr12 66756833 66756895 -54500635 - MLT1A0 LTR MaLR -76 332 271 4 1094 3404 256 20 12 chr12 66756926 66757684 -54499846 - Lx5 LINE L1 -2 7048 6285 4 1094 356 352 118 9 chr12 66757688 66757900 -54499630 - MLT1A0 LTR MaLR -121 244 10 4 1094 434 265 50 61 chr12 66759340 66759642 -54497888 + MTEa LTR MaLR 1 374 -5 4 1094 22 0 0 0 chr12 66760266 66760288 -54497242 + AT_rich Low_complexity Low_complexity 1 22 0 4 1094 345 257 9 98 chr12 66760926 66760997 -54496533 - MTD LTR MaLR -249 170 102 4 1094 4067 108 163 56 chr12 66760997 66761813 -54495717 + RMER17A2 LTR ERVK 1 903 -3 4 1094 345 257 9 98 chr12 66761813 66761853 -54495677 - MTD LTR MaLR -318 101 69 4 1094 1730 136 0 0 chr12 66761870 66762150 -54495380 + L1_Mm LINE L1 4154 4433 -1450 4 1094 5576 8 0 0 chr12 66762143 66762967 -54494563 + L1Md_T LINE L1 5244 6067 -515 4 1094 2591 106 5 3 chr12 66762965 66763354 -54494176 + L1_Mm LINE L1 4363 4752 -1131 4 1094 315 169 45 30 chr12 66763365 66763432 -54494098 - MTD LTR MaLR -348 73 6 4 1094 21 0 0 0 chr12 66763944 66763965 -54493565 + AT_rich Low_complexity Low_complexity 1 21 0 4 1094 1112 129 184 5 chr12 66764004 66764222 -54493308 - Lx4A LINE L1 -2 7056 6800 4 1094 270 337 86 110 chr12 66764696 66765023 -54492507 + MLT1J LTR MaLR 154 472 -40 4 1094 1284 211 87 0 chr12 66767804 66768127 -54489403 - Lx9 LINE L1 -1 7643 7293 4 1094 5157 81 31 16 chr12 66768520 66769252 -54488278 - L1_Mus3 LINE L1 -2 6636 5894 4 1094 314 348 50 50 chr12 66769854 66770072 -54487458 + MIRb SINE MIR 5 222 -46 4 1094 1074 254 114 39 chr12 66770267 66770627 -54486903 - MTD LTR MaLR -14 405 19 4 1094 22 0 0 0 chr12 66770760 66770782 -54486748 + AT_rich Low_complexity Low_complexity 1 22 0 4 1094 2053 77 26 35 chr12 66771054 66771365 -54486165 - L1Md_F2 LINE L1 0 6582 6275 4 1094 234 176 0 0 chr12 66772475 66772526 -54485004 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1094 1892 212 14 14 chr12 66772640 66773009 -54484521 + ORR1D1 LTR MaLR 6 374 0 4 1094 22 0 0 0 chr12 66773462 66773484 -54484046 + AT_rich Low_complexity Low_complexity 1 22 0 4 1094 281 341 92 21 chr12 66773815 66773956 -54483574 - MLT1F LTR MaLR -387 161 11 4 1094 378 0 0 0 chr12 66774047 66774089 -54483441 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1094 279 54 0 0 chr12 66774090 66774127 -54483403 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1094 26 0 0 0 chr12 66774657 66774683 -54482847 + AT_rich Low_complexity Low_complexity 1 26 0 4 1094 3861 228 32 23 chr12 66774961 66775862 -54481668 - Lx9 LINE L1 -163 7481 6573 4 1094 2614 306 92 13 chr12 66775924 66776921 -54480609 + Lx8 LINE L1 6395 7470 -3 4 1094 2048 188 38 3 chr12 66776973 66777346 -54480184 - ORR1B1 LTR MaLR -8 386 1 4 1094 1086 242 121 82 chr12 66778024 66778389 -54479141 - MTEa LTR MaLR 0 379 1 4 1094 1967 224 11 55 chr12 66778743 66778814 -54478716 + MTC LTR MaLR 1 64 -357 4 1094 2394 38 0 0 chr12 66778814 66779104 -54478426 + L1Md_F2 LINE L1 6292 6581 -1 4 1094 1967 224 11 55 chr12 66779104 66779472 -54478058 + MTC LTR MaLR 65 421 0 4 1094 297 385 24 98 chr12 66779819 66779857 -54477673 - B4A SINE B4 -139 153 122 4 1094 4564 105 23 9 chr12 66779857 66780558 -54476972 - Lx LINE L1 -7 6647 5937 4 1094 323 373 8 42 chr12 66780558 66780683 -54476847 - B4 SINE B4 -171 121 2 4 1094 387 60 0 0 chr12 66780884 66780934 -54476596 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1094 412 312 48 20 chr12 66780996 66781143 -54476387 + LTR75 LTR ERVL 17 167 -395 4 1094 405 0 0 0 chr12 66781180 66781225 -54476305 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1094 471 18 0 0 chr12 66781294 66781350 -54476180 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1094 250 241 19 0 chr12 66781357 66781411 -54476119 - ID4 SINE ID -23 60 6 4 1094 1464 61 81 0 chr12 66782001 66782199 -54475331 - L1Md_F2 LINE L1 -620 5962 5749 4 1094 4600 64 7 2 chr12 66782199 66782790 -54474740 + L1Md_F2 LINE L1 5989 6582 0 4 1094 455 287 70 15 chr12 66783293 66783520 -54474010 - MTD LTR MaLR -6 413 152 4 1094 706 214 100 43 chr12 66783521 66783800 -54473730 - L1M3b LINE L1 -1327 5020 4726 4 1094 484 299 75 15 chr12 66783898 66784098 -54473432 + Lx8 LINE L1 6332 6543 -930 4 1094 390 319 49 0 chr12 66784112 66784256 -54473274 + Lx8 LINE L1 6600 6750 -723 4 1094 1953 107 139 21 chr12 66784277 66784650 -54472880 + IAPLTR2_Mm LTR ERVK 59 475 0 4 1094 987 115 25 85 chr12 66784651 66784850 -54472680 + IAPEz-int LTR ERVK 9 195 -6286 4 1094 244 302 0 0 chr12 66784850 66784903 -54472627 + RLTR27 LTR ERVK 223 275 -34 4 1094 3516 64 1 16 chr12 66784903 66785481 -54472049 + IAPEz-int LTR ERVK 168 662 -5819 4 1094 2186 75 0 0 chr12 66785481 66785759 -54471771 + IAPEz-int LTR ERVK 1359 1636 -4845 4 1094 6050 40 3 20 chr12 66785758 66786515 -54471015 + IAPEz-int LTR ERVK 5736 6479 -2 4 1094 2215 114 142 35 chr12 66786517 66786946 -54470584 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1094 665 258 113 63 chr12 66786960 66787262 -54470268 + Lx8 LINE L1 6812 7128 -345 4 1094 415 307 55 36 chr12 66787281 66787379 -54470151 + Lx8 LINE L1 7250 7347 -126 4 1094 3356 114 6 4 chr12 66787379 66787872 -54469658 + Lx LINE L1 6154 6647 -7 4 1094 415 307 55 36 chr12 66787872 66787993 -54469537 + Lx8 LINE L1 7348 7473 0 4 1094 649 291 48 77 chr12 66788019 66788442 -54469088 - L1M3b LINE L1 -1786 4561 4148 4 1094 331 319 121 11 chr12 66788994 66789184 -54468346 - L1M3b LINE L1 -5048 1233 1023 4 1094 225 402 0 41 chr12 66789472 66789594 -54467936 - L1M3b LINE L1 -5538 743 627 4 1094 529 332 89 63 chr12 66789821 66790460 -54467070 - L1M3b LINE L1 -5576 705 50 4 1094 49 66 0 0 chr12 66790775 66790866 -54466664 + AT_rich Low_complexity Low_complexity 1 91 0 4 1094 357 185 15 0 chr12 66790866 66790931 -54466599 - Lx6 LINE L1 -81 7379 7314 4 1094 1663 124 11 32 chr12 66791095 66791379 -54466151 + L1_Mus3 LINE L1 6360 6637 -1 4 1094 5020 118 18 3 chr12 66791471 66792234 -54465296 - Lx2A1 LINE L1 -1 7007 6233 4 1094 26 0 0 0 chr12 66792247 66792273 -54465257 + AT_rich Low_complexity Low_complexity 1 26 0 4 1094 309 26 0 0 chr12 66792358 66792396 -54465134 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 4 1094 540 311 102 34 chr12 66794088 66794678 -54462852 + L1M2 LINE L1 2378 3007 -3136 4 1094 5307 217 72 18 chr12 66795581 66796848 -54460682 + Lx6 LINE L1 5387 6758 -702 4 1094 333 0 0 0 chr12 66796848 66796885 -54460645 + (TTAGGG)n Simple_repeat Simple_repeat 4 40 0 4 1094 5307 232 24 7 chr12 66796885 66797459 -54460071 + Lx6 LINE L1 6759 7353 -343 4 1094 1304 188 63 35 chr12 66797812 66798127 -54459403 + Lx6 LINE L1 7373 7696 0 4 1094 3194 53 5 18 chr12 66798499 66798900 -54458630 + MTA_Mm LTR MaLR 1 396 0 4 1094 1843 108 39 54 chr12 66799817 66800151 -54457379 - Lx LINE L1 -4 6650 6322 4 1094 1630 241 60 50 chr12 66800173 66800981 -54456549 - Lx9 LINE L1 -1217 6427 5464 4 1094 26 0 0 0 chr12 66801612 66801638 -54455892 + AT_rich Low_complexity Low_complexity 1 26 0 4 1094 490 189 155 81 chr12 66802733 66802837 -54454693 + Lx7 LINE L1 4989 5116 -764 4 1094 3006 40 8 3 chr12 66802837 66803212 -54454318 + L1Md_F2 LINE L1 6205 6581 -1 4 1094 490 189 155 81 chr12 66803212 66803268 -54454262 + Lx7 LINE L1 5117 5161 -719 4 1094 214 0 111 0 chr12 66803283 66803319 -54454211 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 4 1094 3658 222 58 18 chr12 66803329 66804170 -54453360 + Lx7 LINE L1 5346 6200 -1496 4 1094 375 23 0 0 chr12 66804170 66804214 -54453316 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1094 3658 236 53 42 chr12 66804214 66804606 -54452924 + Lx7 LINE L1 6201 6598 -1098 4 1094 3604 226 87 11 chr12 66804602 66805483 -54452047 + Lx7 LINE L1 6485 7432 -264 4 1094 207 0 0 0 chr12 66805485 66805508 -54452022 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 4 1094 672 13 0 0 chr12 66805670 66805747 -54451783 + (GAA)n Simple_repeat Simple_repeat 2 78 0 4 1094 399 21 0 0 chr12 66805747 66805795 -54451735 + (CAA)n Simple_repeat Simple_repeat 1 48 0 4 1094 189 130 16 156 chr12 66806147 66806211 -54451319 + L4 LINE RTE 1635 1689 -340 4 1094 187 329 103 26 chr12 66806524 66806602 -54450928 + MIRc SINE MIR 22 105 -163 4 1094 287 328 59 20 chr12 66807937 66808139 -54449391 - L1M5 LINE L1 -385 5855 5646 4 1094 24 32 0 0 chr12 66808467 66808498 -54449032 + AT_rich Low_complexity Low_complexity 1 31 0 4 1094 951 264 69 4 chr12 66808543 66808775 -54448755 - MTD LTR MaLR 0 419 173 4 1094 3095 48 18 0 chr12 66809256 66809651 -54447879 + L1Md_F2 LINE L1 6178 6579 -3 4 1094 426 283 57 47 chr12 66810511 66810704 -54446826 - B3 SINE B2 -3 213 19 4 1094 2439 192 17 30 chr12 66811192 66811724 -54445806 - RLTR11A2 LTR ERVK 0 527 3 4 1094 1179 92 0 0 chr12 66812365 66812627 -54444903 + (GA)n Simple_repeat Simple_repeat 1 262 0 4 1094 191 315 22 33 chr12 66812627 66812719 -54444811 + MIRb SINE MIR 2 92 -176 4 1094 204 40 0 0 chr12 66814461 66814486 -54443044 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1094 22 0 0 0 chr12 66814997 66815019 -54442511 + AT_rich Low_complexity Low_complexity 1 22 0 4 1094 1283 276 28 31 chr12 66815555 66815914 -54441616 + MER57F LTR ERV1 10 367 -69 4 1094 267 353 99 44 chr12 66815984 66816236 -54441294 - Lx8 LINE L1 -2 7471 7206 4 1094 480 165 16 16 chr12 66816496 66816533 -54440997 + polypyrimidine Low_complexity Low_complexity 88 124 0 4 1094 965 119 0 28 chr12 66816533 66816715 -54440815 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 4 1094 480 165 16 16 chr12 66816715 66816800 -54440730 + polypyrimidine Low_complexity Low_complexity 3 87 0 4 1094 3133 38 18 8 chr12 66816858 66817257 -54440273 - L1Md_F2 LINE L1 -13 6569 6167 4 1094 450 319 0 0 chr12 66817266 66817379 -54440151 - Lx5 LINE L1 -58 6992 6880 4 1094 1856 309 55 38 chr12 66817389 66818105 -54439425 - Lx8 LINE L1 -467 7006 6279 4 1094 1132 255 99 32 chr12 66818105 66818449 -54439081 - ORR1D2 LTR MaLR -3 367 1 4 1094 21 57 0 0 chr12 66818600 66818635 -54438895 + AT_rich Low_complexity Low_complexity 1 35 0 4 1094 1033 101 0 0 chr12 66818677 66818816 -54438714 - B1_Mus1 SINE Alu -9 139 1 4 1094 8126 136 30 26 chr12 66820737 66822121 -54435409 + Lx2B LINE L1 5607 6995 -5 5 1094 422 310 36 49 chr12 66822136 66822360 -54435170 - L1M3 LINE L1 -1265 4875 4655 5 1094 509 281 82 0 chr12 66822497 66822643 -54434887 - B3A SINE B2 -36 162 5 5 1094 741 246 152 24 chr12 66822740 66822974 -54434556 - L1M3 LINE L1 -1626 4514 4231 5 1094 257 0 30 0 chr12 66822974 66823007 -54434523 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1094 741 246 152 24 chr12 66823007 66823192 -54434338 - L1M3 LINE L1 -1910 4230 4042 5 1094 257 214 77 22 chr12 66823258 66823349 -54434181 + L1M4 LINE L1 5769 5864 -310 5 1094 2518 266 77 30 chr12 66824972 66825843 -54431687 - Lx9 LINE L1 -136 7508 6597 5 1094 7862 210 48 55 chr12 66825997 66829614 -54427916 - Lx7 LINE L1 -4 7692 4108 5 1094 903 57 8 8 chr12 66829625 66829748 -54427782 - B1_Mm SINE Alu -1 146 24 5 1094 259 306 72 32 chr12 66829856 66829981 -54427549 + MLT1E1A LTR MaLR 551 680 0 5 1094 337 282 72 9 chr12 66830106 66830217 -54427313 + MLT1E1A-int LTR MaLR 347 464 -1025 5 1094 270 269 133 44 chr12 66830349 66830462 -54427068 - B3 SINE B2 -12 204 82 5 1094 236 317 30 98 chr12 66830425 66830558 -54426972 - ID_B1 SINE B4 -98 126 3 5 1094 2653 136 38 2 chr12 66830647 66831068 -54426462 + L1_Mus4 LINE L1 5966 6401 -235 5 1094 807 313 116 44 chr12 66831068 66831655 -54425875 - ORR1D-int LTR MaLR -160 1420 744 5 1094 338 357 9 18 chr12 66831632 66831746 -54425784 - ORR1D-int LTR MaLR -946 634 522 5 1094 819 314 30 52 chr12 66831762 66832132 -54425398 - MTE2a LTR MaLR -44 375 10 5 1094 541 107 0 0 chr12 66832372 66832447 -54425083 + RMER6C LTR ERVK 1 75 -615 5 1094 396 183 0 0 chr12 66832448 66832519 -54425011 + RMER6C LTR ERVK 620 690 0 5 1094 1959 196 33 29 chr12 66832621 66833040 -54424490 + MTC LTR MaLR 1 421 0 5 1094 37 0 0 0 chr12 66833113 66833150 -54424380 + AT_rich Low_complexity Low_complexity 1 37 0 5 1094 243 0 0 0 chr12 66833402 66833429 -54424101 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1094 333 0 0 0 chr12 66833600 66833637 -54423893 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1094 281 321 152 43 chr12 66834219 66834337 -54423193 - Lx7 LINE L1 -1546 5927 5809 5 1094 441 0 0 0 chr12 66834337 66834386 -54423144 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1094 432 0 0 0 chr12 66834386 66834433 -54423097 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1094 358 312 55 25 chr12 66834433 66834609 -54422921 - Lx7 LINE L1 -1665 5808 5603 5 1094 1033 324 65 15 chr12 66834625 66835026 -54422504 + Lx8 LINE L1 6263 6683 -790 5 1094 682 252 88 22 chr12 66835081 66835299 -54422231 - MTD LTR MaLR -15 404 168 5 1094 198 47 44 44 chr12 66835435 66835480 -54422050 + (CAA)n Simple_repeat Simple_repeat 1 45 0 5 1094 1824 28 5 0 chr12 66835623 66835841 -54421689 + L1Md_F2 LINE L1 6343 6561 -21 5 1094 285 29 0 0 chr12 66835841 66835875 -54421655 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1094 1724 74 4 4 chr12 66835875 66835899 -54421631 + L1Md_F2 LINE L1 6561 6583 -1 5 1094 786 337 37 22 chr12 66835912 66836185 -54421345 + Lx6 LINE L1 7014 7290 -170 5 1094 357 24 0 0 chr12 66836192 66836234 -54421296 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 5 1094 235 235 20 0 chr12 66836276 66836327 -54421203 + Lx7 LINE L1 7193 7244 -452 5 1094 524 344 26 21 chr12 66836330 66836523 -54421007 - MTD LTR MaLR -208 213 20 5 1094 1297 284 28 6 chr12 66836547 66836905 -54420625 + Lx8 LINE L1 6759 7124 -349 5 1094 23 0 0 0 chr12 66837715 66837738 -54419792 + AT_rich Low_complexity Low_complexity 1 23 0 5 1094 2604 54 9 0 chr12 66837940 66838276 -54419254 + ORR1A1 LTR MaLR 1 339 -7 5 1094 605 319 35 81 chr12 66838565 66838763 -54418767 + B3A SINE B2 1 189 -9 5 1094 546 319 167 53 chr12 66838929 66839461 -54418069 - MLT1F-int LTR MaLR -10 1479 887 5 1094 1204 277 38 44 chr12 66839469 66839809 -54417721 - ORR1E LTR MaLR -20 339 2 5 1094 1352 226 93 20 chr12 66839866 66840210 -54417320 - ORR1D1 LTR MaLR -5 369 1 5 1094 1000 112 12 0 chr12 66840343 66840503 -54417027 - L1_Mus3 LINE L1 -7 6631 6470 5 1094 380 402 35 0 chr12 66840511 66840680 -54416850 - B4A SINE B4 -116 176 2 5 1094 29 28 0 0 chr12 66840691 66840727 -54416803 + AT_rich Low_complexity Low_complexity 1 36 0 5 1094 535 263 72 7 chr12 66840727 66840880 -54416650 - RSINE1 SINE B4 0 165 3 5 1094 1905 210 182 27 chr12 66842353 66842868 -54414662 + RMER19B LTR ERVK 308 902 0 5 1094 184 41 122 0 chr12 66843115 66843164 -54414366 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 5 1094 2235 97 39 28 chr12 66843649 66844011 -54413519 + RLTR9E LTR ERVK 44 409 0 5 1094 409 247 55 40 chr12 66844055 66844172 -54413358 - B3 SINE B2 -72 123 2 5 1094 423 0 0 0 chr12 66845504 66845551 -54411979 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1095 268 43 21 21 chr12 66846737 66846784 -54410746 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1095 1028 93 0 0 chr12 66846784 66846923 -54410607 - B1_Mus1 SINE Alu -8 140 2 5 1095 208 349 48 0 chr12 66847562 66847625 -54409905 + MIRc SINE MIR 14 79 -189 5 1095 27 73 0 0 chr12 66848490 66848545 -54408985 + AT_rich Low_complexity Low_complexity 1 55 0 5 1095 2350 71 12 15 chr12 66848801 66849128 -54408402 + L1Md_F2 LINE L1 6245 6570 -12 5 1095 435 63 0 0 chr12 66849208 66849271 -54408259 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1095 237 312 31 0 chr12 66849278 66849342 -54408188 - ID4_ SINE ID -16 67 2 5 1095 259 324 53 23 chr12 66849363 66849493 -54408037 - B1F SINE Alu -8 141 13 5 1095 2878 205 158 27 chr12 66849522 66850309 -54407221 - RMER19B LTR ERVK -12 890 1 5 1095 728 22 11 0 chr12 66850617 66850707 -54406823 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 1095 21 36 0 0 chr12 66851490 66851518 -54406012 + AT_rich Low_complexity Low_complexity 1 28 0 5 1095 231 242 10 48 chr12 66852622 66852726 -54404804 + L1M4 LINE L1 4305 4404 -1742 5 1095 427 333 8 0 chr12 66852729 66852846 -54404684 - B1F SINE Alu -8 141 24 5 1095 450 0 0 0 chr12 66852848 66852898 -54404632 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1095 232 321 28 0 chr12 66853303 66853412 -54404118 + L1M4 LINE L1 4821 4932 -1214 5 1095 641 309 41 10 chr12 66853534 66853730 -54403800 - MLT1A0 LTR MaLR 0 365 164 5 1095 492 223 19 19 chr12 66853746 66853851 -54403679 - PB1D10 SINE Alu -1 116 12 5 1095 308 196 0 0 chr12 66854493 66854549 -54402981 + Lx7 LINE L1 7619 7674 -22 5 1095 3110 162 48 102 chr12 66854610 66855353 -54402177 + Lx3A LINE L1 6043 6745 -236 5 1095 201 184 0 73 chr12 66855447 66855529 -54402001 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 1095 433 319 50 66 chr12 66855596 66855777 -54401753 - B4A SINE B4 -113 179 2 5 1095 902 297 47 18 chr12 66856797 66857140 -54400390 + Lx7 LINE L1 6949 7301 -395 5 1095 198 143 0 0 chr12 66857193 66857228 -54400302 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1095 1712 222 89 62 chr12 66857382 66857678 -54399852 + Lx7 LINE L1 5288 5606 -274 5 1095 1087 88 0 51 chr12 66857678 66857834 -54399696 - B1_Mus1 SINE Alu 0 148 1 5 1095 1712 230 89 58 chr12 66857834 66858128 -54399402 + Lx7 LINE L1 5599 5910 -1563 5 1095 357 24 0 0 chr12 66858156 66858198 -54399332 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1095 312 307 25 42 chr12 66858198 66858317 -54399213 + Lx7 LINE L1 6196 6312 -1384 5 1095 2034 279 83 18 chr12 66858301 66858928 -54398602 + Lx7 LINE L1 6416 7083 -613 5 1095 285 197 148 0 chr12 66858924 66858985 -54398545 - Lx9 LINE L1 -495 7149 7080 5 1095 6221 102 23 7 chr12 66859230 66860116 -54397414 - Lx LINE L1 -168 6486 5587 5 1095 261 139 0 0 chr12 66860115 66860158 -54397372 + L1_Mur2 LINE L1 5570 5612 -265 5 1095 802 201 24 53 chr12 66860132 66860353 -54397177 - Lx5 LINE L1 -656 5928 5711 5 1095 2254 166 70 52 chr12 66860325 66860866 -54396664 + L1_Mur2 LINE L1 4220 4770 -1107 5 1095 612 40 0 0 chr12 66861164 66861239 -54396291 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 5 1095 4236 101 25 28 chr12 66861239 66861832 -54395698 - Lx3_Mus LINE L1 -21 6988 6396 5 1095 495 79 13 0 chr12 66861832 66861908 -54395622 - L1_Mus2 LINE L1 -1 6565 6489 5 1095 4236 101 25 28 chr12 66861908 66861947 -54395583 - Lx3_Mus LINE L1 -614 6395 6357 5 1095 13124 185 93 24 chr12 66861941 66863126 -54394404 - L1_Mur1 LINE L1 -1223 4654 3476 5 1095 1118 102 0 0 chr12 66863126 66863273 -54394257 - B1_Mus1 SINE Alu 0 148 2 5 1095 13124 174 105 19 chr12 66863273 66865817 -54391713 - L1_Mur1 LINE L1 -2402 3475 660 5 1095 907 80 0 0 chr12 66865860 66865973 -54391557 + L1Md_F3 LINE L1 5474 5586 -297 5 1095 8396 29 5 0 chr12 66865974 66866966 -54390564 + L1Md_F3 LINE L1 5588 6584 0 5 1095 381 267 115 26 chr12 66867700 66867892 -54389638 - Charlie5 DNA MER1_type -54 2570 2362 5 1095 606 14 0 0 chr12 66868312 66868383 -54389147 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1095 1120 376 43 16 chr12 66869939 66870709 -54386821 - Lx8 LINE L1 -186 7287 6497 5 1095 693 102 141 0 chr12 66870710 66870838 -54386692 - RLTR47_MM LTR ERV1 -386 146 1 5 1095 452 305 45 45 chr12 66870973 66871217 -54386313 - RNERVK23-int LTR ERVK -461 7756 7513 5 1095 663 87 0 0 chr12 66871388 66871492 -54386038 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 5 1095 602 328 73 33 chr12 66871964 66872362 -54385168 - RLTR4_MM-int LTR ERV1 -2039 5562 5154 5 1095 3715 203 60 37 chr12 66872362 66873299 -54384231 - RMER17B LTR ERVK 0 958 1 5 1095 602 328 73 33 chr12 66873299 66873379 -54384151 - RLTR4_MM-int LTR ERV1 -2448 5153 5065 5 1095 1902 154 80 0 chr12 66873712 66874036 -54383494 + Lx4A LINE L1 6704 7053 -5 5 1095 234 0 0 0 chr12 66874036 66874062 -54383468 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1095 625 256 116 63 chr12 66874838 66875293 -54382237 - RLTR11B LTR ERVK -29 499 7 5 1095 333 0 0 0 chr12 66875296 66875333 -54382197 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1095 27 73 0 0 chr12 66875414 66875469 -54382061 + AT_rich Low_complexity Low_complexity 1 55 0 5 1095 611 57 0 11 chr12 66875469 66875558 -54381972 + (CACCAT)n Simple_repeat Simple_repeat 5 92 0 5 1095 208 211 76 38 chr12 66876671 66876750 -54380780 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 5 1095 554 356 17 11 chr12 66877152 66877331 -54380199 - MER44B DNA MER2_type -244 306 127 5 1095 513 0 0 0 chr12 66877514 66877571 -54379959 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1095 371 279 69 38 chr12 66877678 66877838 -54379692 + Tigger7 DNA MER2_type 2327 2491 0 5 1095 203 121 14 57 chr12 66879317 66879387 -54378143 + A-rich Low_complexity Low_complexity 3 69 0 5 1095 1644 237 95 0 chr12 66879874 66880296 -54377234 + Lx3C LINE L1 6511 6972 -4 6 1095 4619 99 58 2 chr12 66880378 66881641 -54375889 + L1_Mus3 LINE L1 5304 6630 -8 6 1095 245 29 29 0 chr12 66881821 66881855 -54375675 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1095 31 0 0 0 chr12 66881864 66881895 -54375635 + AT_rich Low_complexity Low_complexity 1 31 0 6 1095 506 257 57 0 chr12 66881989 66882094 -54375436 - B1F1 SINE Alu -7 113 3 6 1095 2979 98 51 5 chr12 66882493 66882925 -54374605 + L1_Mus1 LINE L1 6116 6567 0 6 1095 4643 96 78 19 chr12 66883641 66884376 -54373154 - Lx LINE L1 0 6654 5877 6 1095 2240 105 100 86 chr12 66885457 66885925 -54371605 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1095 6107 39 5 12 chr12 66885925 66886676 -54370854 - IAPEz-int LTR ERVK 0 6481 5736 6 1095 2209 72 0 0 chr12 66886675 66886953 -54370577 - IAPEz-int LTR ERVK -4845 1636 1359 6 1095 4185 91 24 40 chr12 66886953 66887809 -54369721 - IAPEz-int LTR ERVK -5819 662 9 6 1095 2200 110 100 86 chr12 66887810 66888278 -54369252 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1095 437 331 66 55 chr12 66888714 66889062 -54368468 - L1M5 LINE L1 -3185 2961 2610 6 1095 369 0 0 0 chr12 66889077 66889118 -54368412 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1095 25 51 0 0 chr12 66889259 66889298 -54368232 + AT_rich Low_complexity Low_complexity 1 39 0 6 1095 606 67 29 0 chr12 66889359 66889464 -54368066 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 6 1095 28 29 0 0 chr12 66889685 66889720 -54367810 + AT_rich Low_complexity Low_complexity 1 35 0 6 1095 459 52 0 0 chr12 66889863 66889921 -54367609 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1095 875 263 30 84 chr12 66889971 66890270 -54367260 - B4A SINE B4 0 292 10 6 1095 2091 165 22 3 chr12 66890477 66890848 -54366682 + ORR1C1 LTR MaLR 1 378 0 6 1095 241 162 56 28 chr12 66890852 66890960 -54366570 + (TA)n Simple_repeat Simple_repeat 2 112 0 6 1095 291 164 0 0 chr12 66891410 66891471 -54366059 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1095 225 195 0 0 chr12 66893331 66893372 -54364158 - ID4_ SINE ID -15 68 28 6 1095 502 264 112 15 chr12 66895219 66895499 -54362031 + L1MA6 LINE L1 5525 5832 -471 6 1095 561 239 9 0 chr12 66895499 66895612 -54361918 + PB1D7 SINE Alu 1 114 -6 6 1095 495 296 88 36 chr12 66895612 66895717 -54361813 + L1MA6 LINE L1 5833 5929 -374 6 1095 502 226 19 0 chr12 66895852 66896006 -54361524 + RMER1B Other Other 474 593 -473 6 1095 414 0 0 0 chr12 66896024 66896070 -54361460 + (TTA)n Simple_repeat Simple_repeat 3 48 0 6 1095 520 183 0 25 chr12 66896073 66896191 -54361339 + RMER1B Other Other 943 1057 -9 6 1095 517 115 0 0 chr12 66896415 66896493 -54361037 + MTB_Mm LTR MaLR 1 78 -329 6 1095 5242 135 104 109 chr12 66896490 66896669 -54360861 + MTB-int LTR MaLR 31 213 -1045 6 1095 4724 78 3 2 chr12 66896669 66897289 -54360241 - L1_Mus3 LINE L1 -2 6636 6016 6 1095 5242 135 104 109 chr12 66897289 66898343 -54359187 + MTB-int LTR MaLR 214 1258 0 6 1095 2984 86 5 0 chr12 66898345 66898741 -54358789 + MTB LTR MaLR 3 400 0 6 1095 408 20 0 0 chr12 66898815 66898864 -54358666 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1095 189 0 0 0 chr12 66899428 66899449 -54358081 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1095 255 79 0 0 chr12 66899835 66899873 -54357657 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1095 346 352 40 0 chr12 66900983 66901108 -54356422 + ID_B1 SINE B4 91 220 -4 6 1095 222 300 0 12 chr12 66901111 66901192 -54356338 + GA-rich Low_complexity Low_complexity 3 82 0 6 1095 462 335 85 10 chr12 66901414 66901930 -54355600 - L1MA5 LINE L1 -5 6295 5741 6 1095 2836 21 89 0 chr12 66902236 66902573 -54354957 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1095 52663 24 17 6 chr12 66902573 66908972 -54348558 - IAPEz-int LTR ERVK 0 6481 8 6 1095 2823 24 89 0 chr12 66908972 66909309 -54348221 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1095 805 296 28 0 chr12 66910225 66910438 -54347092 - ID_B1 SINE B4 0 224 6 6 1095 483 18 0 0 chr12 66910440 66910496 -54347034 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 6 1095 270 116 0 0 chr12 66910520 66910563 -54346967 + (TATG)n Simple_repeat Simple_repeat 2 44 0 6 1095 813 107 0 0 chr12 66911668 66911790 -54345740 + (ATG)n Simple_repeat Simple_repeat 3 124 0 6 1095 205 0 0 100 chr12 66912261 66912311 -54345219 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 6 1095 253 265 73 0 chr12 66912319 66912387 -54345143 - LTR40b LTR ERVL -228 234 162 6 1095 23 78 0 0 chr12 66912398 66912449 -54345081 + AT_rich Low_complexity Low_complexity 1 51 0 6 1095 334 255 30 12 chr12 66912623 66912790 -54344740 + (TA)n Simple_repeat Simple_repeat 1 170 0 6 1095 6523 91 70 4 chr12 66912797 66913826 -54343704 - L1_Mus3 LINE L1 -2 6636 5540 6 1095 27 29 0 0 chr12 66913832 66913866 -54343664 + AT_rich Low_complexity Low_complexity 1 34 0 6 1095 229 217 0 55 chr12 66914530 66914603 -54342927 + (CAAT)n Simple_repeat Simple_repeat 3 71 0 6 1095 709 311 0 6 chr12 66915525 66915703 -54341827 - B3 SINE B2 -35 181 5 6 1095 378 0 0 0 chr12 66915896 66915938 -54341592 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1095 285 244 80 23 chr12 66916638 66916726 -54340804 + LTR16A LTR ERVL 296 388 -63 6 1095 1003 305 85 39 chr12 66916991 66917451 -54340079 - MER34A1 LTR ERV1 -62 525 45 6 1095 322 360 155 68 chr12 66917504 66917918 -54339612 - LTR16A LTR ERVL 0 451 2 6 1095 693 336 165 12 chr12 66918054 66918472 -54339058 + L3 LINE CR1 3324 3805 -684 6 1095 214 315 10 80 chr12 66918591 66918691 -54338839 - MER5B DNA MER1_type -83 95 3 6 1095 320 311 121 24 chr12 66918913 66919078 -54338452 + B3A SINE B2 1 181 -17 6 1095 1817 221 13 7 chr12 66919122 66919829 -54337701 + L1_Mur3 LINE L1 879 1591 -4286 6 1095 2671 244 78 19 chr12 66919827 66920321 -54337209 + Lx5 LINE L1 6275 6792 -258 6 1095 4134 125 3 0 chr12 66920321 66920920 -54336610 + MT2B LTR ERVL 1 601 0 6 1095 2671 244 78 19 chr12 66920920 66921153 -54336377 + Lx5 LINE L1 6793 7045 -5 6 1095 29 47 0 0 chr12 66921211 66921254 -54336276 + AT_rich Low_complexity Low_complexity 1 43 0 6 1095 192 330 27 72 chr12 66921255 66921366 -54336164 + L3 LINE CR1 4167 4272 -217 6 1095 247 209 82 82 chr12 66921606 66921679 -54335851 - MER117 DNA MER1_type -67 130 58 6 1095 627 144 0 0 chr12 66922145 66922284 -54335246 + (GA)n Simple_repeat Simple_repeat 2 140 0 6 1095 1037 261 141 61 chr12 66922848 66922993 -54334537 - L1MC2 LINE L1 -112 6232 6083 6 1095 1819 87 19 4 chr12 66922993 66923259 -54334271 + L1_Mus2 LINE L1 6297 6566 0 6 1095 1037 261 141 61 chr12 66923259 66923718 -54333812 - L1MC2 LINE L1 -262 6082 5580 6 1095 317 292 65 32 chr12 66923804 66923928 -54333602 - L1MC2 LINE L1 -2398 5387 5260 6 1095 1333 29 6 6 chr12 66924074 66924245 -54333285 + (TTTCC)n Simple_repeat Simple_repeat 3 173 0 6 1095 342 0 0 0 chr12 66924284 66924322 -54333208 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1095 351 0 0 0 chr12 66924322 66924360 -54333170 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1095 962 276 120 27 chr12 66924361 66924812 -54332718 - Lx8 LINE L1 -191 7282 6790 6 1095 478 301 24 6 chr12 66924826 66924993 -54332537 - Lx8 LINE L1 -816 6657 6488 6 1095 2580 16 102 0 chr12 66925493 66925807 -54331723 - ORR1A0 LTR MaLR 0 346 1 6 1095 341 295 0 0 chr12 66926358 66926436 -54331094 - MTEb LTR MaLR -98 281 204 6 1095 646 276 57 5 chr12 66926485 66926678 -54330852 - MTEb LTR MaLR -173 206 4 6 1095 288 356 68 8 chr12 66927224 66927357 -54330173 - B1F SINE Alu -8 141 1 6 1095 25 51 0 0 chr12 66927406 66927445 -54330085 + AT_rich Low_complexity Low_complexity 1 39 0 6 1095 257 277 0 0 chr12 66928472 66928537 -54328993 + Lx7 LINE L1 6235 6299 -1397 6 1095 1140 49 14 0 chr12 66928605 66928748 -54328782 + B1_Mus1 SINE Alu 3 147 -1 6 1095 241 68 45 0 chr12 66928750 66928794 -54328736 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 6 1095 275 381 0 0 chr12 66928796 66928914 -54328616 + Lx7 LINE L1 6384 6501 -1195 6 1095 515 197 143 10 chr12 66928921 66929060 -54328470 + ORR1C1 LTR MaLR 1 145 -222 6 1095 6814 125 36 26 chr12 66929079 66931169 -54326361 + Lx LINE L1 433 2320 -3560 6 1095 4940 78 0 6 chr12 66931169 66931827 -54325703 - L1Md_F2 LINE L1 -12 6570 5917 6 1095 7563 182 153 2 chr12 66931827 66933807 -54323723 + Lx LINE L1 2321 5391 -492 6 1095 3218 46 3 0 chr12 66933807 66934196 -54323334 + RLTR10 LTR ERVK 1 390 0 6 1095 3738 96 58 27 chr12 66934197 66934831 -54322699 + IAPEz-int LTR ERVK 9 662 -5819 6 1095 1945 71 41 0 chr12 66934831 66935098 -54322432 + IAPEz-int LTR ERVK 1359 1636 -4845 6 1095 1680 52 0 68 chr12 66935097 66935346 -54322184 + IAPEz-int LTR ERVK 5736 5967 -514 6 1095 942 170 42 26 chr12 66935346 66935539 -54321991 - IAPLTR2b LTR ERVK -131 196 1 6 1095 6778 120 10 6 chr12 66935539 66936803 -54320727 + Lx LINE L1 5386 6654 0 6 1095 823 196 167 0 chr12 66936827 66937031 -54320499 + ORR1C1 LTR MaLR 141 378 0 6 1095 327 239 0 0 chr12 66937032 66937103 -54320427 - L1M2 LINE L1 -553 5744 5674 6 1095 540 259 75 24 chr12 66937163 66937416 -54320114 + L1M2 LINE L1 4598 4863 -1280 6 1095 2286 318 58 59 chr12 66937509 66938720 -54318810 + Lx8 LINE L1 5960 7141 -332 6 1095 234 0 0 0 chr12 66938720 66938746 -54318784 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1095 2286 315 60 61 chr12 66938746 66939052 -54318478 + Lx8 LINE L1 7142 7472 -1 6 1095 478 250 66 48 chr12 66939125 66939441 -54318089 + L1M2 LINE L1 5208 5532 -768 6 1095 205 309 36 24 chr12 66939546 66939629 -54317901 - L2a LINE L2 -86 3340 3257 6 1095 1959 181 19 8 chr12 66939646 66940009 -54317521 - ORR1B2 LTR MaLR 0 367 1 6 1095 346 378 23 0 chr12 66940307 66940479 -54317051 - L2a LINE L2 -559 2860 2685 6 1095 378 0 0 0 chr12 66940701 66940743 -54316787 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1095 249 351 45 0 chr12 66941218 66941329 -54316201 + PB1D10 SINE Alu 1 116 -1 6 1095 25 51 0 0 chr12 66941388 66941427 -54316103 + AT_rich Low_complexity Low_complexity 1 39 0 6 1095 471 92 27 27 chr12 66941887 66941999 -54315531 + (TA)n Simple_repeat Simple_repeat 2 113 0 6 1095 501 310 60 4 chr12 66942005 66942254 -54315276 - Lx9 LINE L1 -184 7460 7198 6 1095 3259 185 47 3 chr12 66942372 66943013 -54314517 - Lx3C LINE L1 -2 6974 6306 6 1095 578 185 89 0 chr12 66943013 66943148 -54314382 - L1_Mur3 LINE L1 -2905 2975 2829 6 1095 5731 155 83 28 chr12 66943146 66943790 -54313740 + L1_Mur3 LINE L1 3056 3718 -2162 6 1095 3111 56 5 2 chr12 66943790 66944185 -54313345 + MTA_Mm LTR MaLR 1 396 0 6 1095 5731 155 83 28 chr12 66944185 66944749 -54312781 + L1_Mur3 LINE L1 3719 4312 -1568 6 1095 3694 38 0 0 chr12 66944749 66945193 -54312337 + L1Md_A LINE L1 6139 6582 0 6 1095 5731 155 83 28 chr12 66945193 66945291 -54312239 + L1_Mur3 LINE L1 4313 4434 -1446 6 1095 235 264 21 62 chr12 66945292 66945389 -54312141 + RMER4A LTR ERVK 306 398 -68 6 1095 241 262 41 30 chr12 66945395 66945564 -54311966 + Lx7 LINE L1 7365 7535 -161 6 1095 862 332 15 92 chr12 66946071 66946409 -54311121 + MTE2a LTR MaLR 1 312 -67 6 1095 1068 190 14 74 chr12 66946409 66946705 -54310825 + L1_Rod LINE L1 2284 2561 -3286 6 1095 942 274 33 16 chr12 66946698 66946943 -54310587 - Lx9 LINE L1 -1012 6632 6384 6 1095 386 318 18 23 chr12 66946975 66947194 -54310336 + L1MC4 LINE L1 1326 1543 -4672 6 1095 594 51 0 0 chr12 66947195 66947273 -54310257 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 1095 1401 316 52 24 chr12 66947310 66947926 -54309604 - MER82 DNA MER2_type -3 650 18 6 1095 350 330 68 14 chr12 66948148 66948369 -54309161 + L1MC4 LINE L1 1792 2024 -4191 6 1095 694 314 35 0 chr12 66948719 66948888 -54308642 + B3 SINE B2 6 180 -36 6 1095 207 243 29 0 chr12 66948905 66948975 -54308555 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1095 21 82 0 0 chr12 66949021 66949070 -54308460 + AT_rich Low_complexity Low_complexity 1 49 0 7 1095 453 294 9 9 chr12 66949105 66949215 -54308315 + ID_B1 SINE B4 2 111 -113 7 1095 1658 60 7 3 chr12 66949182 66949416 -54308114 + ORR1A0 LTR MaLR 138 384 0 7 1095 1628 42 0 5 chr12 66949416 66949631 -54307899 + ORR1A0-int LTR MaLR 1 214 -1578 7 1095 180 143 0 0 chr12 66949633 66949675 -54307855 + (T)n Simple_repeat Simple_repeat 1 42 0 7 1095 304 343 0 29 chr12 66949675 66949780 -54307750 + ID_B1 SINE B4 118 219 -5 7 1095 1134 61 0 0 chr12 66950942 66951089 -54306441 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 7 1095 358 285 91 15 chr12 66951908 66952040 -54305490 + MER45A DNA Tip100 8 149 -29 7 1095 23 0 0 0 chr12 66952223 66952246 -54305284 + AT_rich Low_complexity Low_complexity 1 23 0 7 1095 22 56 0 0 chr12 66952584 66952620 -54304910 + AT_rich Low_complexity Low_complexity 1 36 0 7 1095 1389 269 95 28 chr12 66952721 66953153 -54304377 + L1_Mur3 LINE L1 1618 2066 -3814 7 1095 569 52 13 0 chr12 66953153 66953230 -54304300 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 1095 1389 269 95 28 chr12 66953230 66953416 -54304114 + L1_Mur3 LINE L1 2067 2277 -3603 7 1095 250 265 35 46 chr12 66953415 66953502 -54304028 - Lx9 LINE L1 -358 7286 7201 7 1095 1794 280 25 8 chr12 66953554 66954037 -54303493 - Lx9 LINE L1 -773 6871 6381 7 1095 430 125 34 0 chr12 66954062 66954150 -54303380 + (CATA)n Simple_repeat Simple_repeat 2 92 0 7 1095 206 215 46 0 chr12 66954151 66954216 -54303314 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 7 1095 1794 154 71 56 chr12 66954333 66954711 -54302819 + ORR1C2 LTR MaLR 1 384 0 7 1095 669 286 163 16 chr12 66955545 66955858 -54301672 - Lx8 LINE L1 -363 7110 6752 7 1095 22 0 0 0 chr12 66956844 66956866 -54300664 + AT_rich Low_complexity Low_complexity 1 22 0 7 1095 413 329 36 0 chr12 66956870 66957007 -54300523 - RSINE1 SINE B4 -14 151 10 7 1095 434 227 0 0 chr12 66957436 66957546 -54299984 - Lx9 LINE L1 -32 7612 7503 7 1095 2867 181 37 80 chr12 66957547 66958268 -54299262 + RMER6C LTR ERVK 1 690 0 7 1095 1153 214 41 8 chr12 66958268 66958536 -54298994 - Lx9 LINE L1 -149 7495 7219 7 1095 3081 231 66 11 chr12 66958777 66959503 -54298027 + Lx9 LINE L1 6308 7073 -571 7 1095 444 360 99 5 chr12 66959507 66959708 -54297822 + MLT1H LTR MaLR 81 300 -249 7 1095 5389 141 31 8 chr12 66960525 66962046 -54295484 + Lx3C LINE L1 5090 6644 -332 7 1095 4575 8 0 0 chr12 66962034 66962551 -54294979 + L1Md_A LINE L1 5070 5586 -297 7 1095 9004 3 0 0 chr12 66962551 66963547 -54293983 + L1Md_A LINE L1 5587 6582 0 7 1095 1393 205 59 3 chr12 66963565 66963888 -54293642 + Lx3C LINE L1 6634 6974 -2 7 1095 189 324 170 9 chr12 66964129 66964241 -54293289 + L2b LINE L2 3245 3374 -1 7 1095 1706 167 103 0 chr12 66964438 66964749 -54292781 + ORR1B1 LTR MaLR 1 343 -51 7 1095 332 238 38 0 chr12 66964756 66964836 -54292694 + B3 SINE B2 27 109 -107 7 1095 2017 251 77 30 chr12 66965530 66966155 -54291375 + Lx9 LINE L1 6328 6981 -663 7 1095 1809 224 10 35 chr12 66966156 66966554 -54290976 + MTC LTR MaLR 3 390 -31 7 1095 233 133 133 0 chr12 66966559 66966604 -54290926 + Lx9 LINE L1 6974 7024 -620 7 1095 204 67 0 0 chr12 66966700 66966730 -54290800 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1095 1194 54 0 0 chr12 66966735 66966882 -54290648 - B1_Mus2 SINE Alu 0 147 1 7 1095 871 291 181 15 chr12 66966882 66967253 -54290277 + Lx9 LINE L1 7086 7484 -160 7 1095 264 77 0 0 chr12 66967253 66967292 -54290238 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1095 871 291 181 15 chr12 66967292 66967395 -54290135 + Lx9 LINE L1 7485 7639 -5 7 1095 231 133 0 0 chr12 66967830 66967875 -54289655 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1095 297 301 75 0 chr12 66969190 66969283 -54288247 - PB1D10 SINE Alu -9 108 9 7 1095 21 36 0 0 chr12 66970077 66970105 -54287425 + AT_rich Low_complexity Low_complexity 1 28 0 7 1095 431 373 9 71 chr12 66970302 66970527 -54287003 - B4A SINE B4 0 292 82 7 1095 453 295 85 20 chr12 66970596 66970890 -54286640 - L1M1 LINE L1 -495 5805 5493 7 1095 617 231 50 33 chr12 66970893 66971095 -54286435 - B3A SINE B2 -4 191 1 7 1095 294 106 0 0 chr12 66971527 66971574 -54285956 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 7 1095 1102 233 221 8 chr12 66972146 66972535 -54284995 - Lx2 LINE L1 -1 6996 6525 7 1095 551 262 202 98 chr12 66973513 66973856 -54283674 + MTE2a LTR MaLR 1 379 0 7 1095 405 335 190 20 chr12 66974265 66974512 -54283018 + B4A SINE B4 2 290 -2 7 1095 260 143 18 0 chr12 66974525 66974581 -54282949 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1095 183 42 0 0 chr12 66975892 66975916 -54281614 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 7 1095 222 136 23 0 chr12 66976585 66976629 -54280901 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 7 1096 974 277 179 20 chr12 66977928 66978442 -54279088 - Lx8 LINE L1 -94 7379 6785 7 1096 49 60 0 0 chr12 66978761 66978845 -54278685 + AT_rich Low_complexity Low_complexity 1 84 0 7 1096 312 231 73 193 chr12 66979013 66979163 -54278367 - RSINE1 SINE B4 -29 136 5 7 1096 7742 60 15 16 chr12 66979235 66980654 -54276876 - L1Md_F2 LINE L1 -1 6581 5186 7 1096 397 204 9 9 chr12 66981527 66981636 -54275894 - L1Md_A LINE L1 -4 6578 6470 7 1096 2334 86 10 0 chr12 66981652 66981966 -54275564 - L1_Mus1 LINE L1 -1 6566 6250 7 1096 312 103 0 5 chr12 66981966 66982026 -54275504 - L1_Mus1 LINE L1 -89 6478 6419 7 1096 7706 82 20 0 chr12 66982046 66983569 -54273961 - L1_Mus1 LINE L1 0 6567 4999 7 1096 478 351 88 19 chr12 66983589 66983897 -54273633 + MLT1E2 LTR MaLR 52 380 -247 7 1096 1581 273 38 0 chr12 66984147 66984543 -54272987 - MTD LTR MaLR -8 411 1 7 1096 965 335 42 45 chr12 66984592 66985362 -54272168 + L1M2 LINE L1 3375 4141 -2002 7 1096 276 213 37 74 chr12 66985430 66985492 -54272038 + RSINE1 SINE B4 78 138 -27 7 1096 522 0 0 0 chr12 66985492 66985550 -54271980 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1096 297 0 0 0 chr12 66985550 66985582 -54271948 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1096 276 213 37 74 chr12 66985582 66985599 -54271931 + RSINE1 SINE B4 139 154 -11 7 1096 21 36 0 0 chr12 66987003 66987031 -54270499 + AT_rich Low_complexity Low_complexity 1 28 0 7 1096 260 337 11 21 chr12 66988564 66988658 -54268872 - B1_Mur2 SINE Alu -30 119 27 7 1096 186 411 10 21 chr12 66988701 66988798 -54268732 + MIR SINE MIR 1 96 -166 7 1096 663 290 21 16 chr12 66989601 66989787 -54267743 - B3 SINE B2 -27 189 3 7 1096 276 314 90 8 chr12 66989931 66990053 -54267477 + MIRb SINE MIR 75 206 -62 7 1096 278 341 23 30 chr12 66990038 66990171 -54267359 + L2a LINE L2 3277 3408 -18 7 1096 441 54 0 0 chr12 66991401 66991457 -54266073 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1096 31 44 0 0 chr12 66991906 66991951 -54265579 + AT_rich Low_complexity Low_complexity 1 45 0 7 1096 1375 269 39 108 chr12 66992073 66992582 -54264948 - RMER19C LTR ERVK 0 611 138 7 1096 580 342 26 5 chr12 66993304 66993495 -54264035 - B3A SINE B2 -3 195 1 7 1096 711 270 94 6 chr12 66994320 66994648 -54262882 + L1M3 LINE L1 4420 4776 -1364 7 1096 245 301 12 0 chr12 66994659 66994742 -54262788 - B1_Mur1 SINE Alu -28 121 38 7 1096 449 296 17 0 chr12 66994807 66994922 -54262608 + ID_B1 SINE B4 99 215 -9 7 1096 456 244 12 0 chr12 66996033 66996119 -54261411 - B1_Mur2 SINE Alu -57 92 6 7 1096 369 264 92 0 chr12 66996043 66996130 -54261400 - B4 SINE B4 -125 167 73 7 1096 438 378 85 40 chr12 66996801 66997129 -54260401 - MLT1A0 LTR MaLR -4 361 19 7 1096 29 28 0 0 chr12 66997135 66997171 -54260359 + AT_rich Low_complexity Low_complexity 1 36 0 7 1096 226 258 162 38 chr12 66997384 66997569 -54259961 + L1M3 LINE L1 4957 5164 -979 7 1096 440 354 13 69 chr12 66997581 66997812 -54259718 + B4 SINE B4 13 230 -62 7 1096 450 327 76 12 chr12 66997875 66998126 -54259404 + L1M3 LINE L1 5127 5393 -750 7 1096 412 322 148 28 chr12 66998775 66998954 -54258576 + Tigger7 DNA MER2_type 29 227 -2264 7 1096 1691 199 62 3 chr12 66998954 66999307 -54258223 - ORR1D1 LTR MaLR 0 374 1 7 1096 412 322 148 28 chr12 66999307 66999411 -54258119 + Tigger7 DNA MER2_type 228 346 -2145 7 1096 4989 15 0 0 chr12 66999411 67000000 -54257530 - L1_Mm LINE L1 -2289 3594 3006 7 1096 2918 28 8 0 chr12 67000000 67000352 -54257178 - L1_Mm LINE L1 -2878 3005 2651 1 1096 16736 27 3 1 chr12 67000342 67002348 -54255182 + L1Md_T LINE L1 3577 5586 -297 2 1096 8213 39 2 0 chr12 67002348 67003363 -54254167 + L1Md_T LINE L1 5587 6582 0 2 1096 412 279 173 13 chr12 67003363 67003519 -54254011 + Tigger7 DNA MER2_type 336 516 -1975 3 1096 1221 289 21 72 chr12 67004232 67004389 -54253141 - ORR1D2 LTR MaLR 0 370 220 4 1096 998 118 11 27 chr12 67004389 67004572 -54252958 + L1_Mus3 LINE L1 6459 6638 0 5 1096 1221 289 21 72 chr12 67004572 67004802 -54252728 - ORR1D2 LTR MaLR -151 219 3 4 1096 1604 298 108 24 chr12 67004913 67005570 -54251960 - MER21B LTR ERV1 -11 852 141 6 1096 204 175 0 24 chr12 67005656 67005678 -54251852 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 1096 360 0 0 0 chr12 67005678 67005718 -54251812 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1096 204 175 0 24 chr12 67005718 67005736 -54251794 + (TA)n Simple_repeat Simple_repeat 1 18 0 9 1096 372 43 0 0 chr12 67005815 67005861 -54251669 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1 1096 398 94 16 0 chr12 67005985 67006049 -54251481 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1096 26 0 0 0 chr12 67006578 67006604 -54250926 + AT_rich Low_complexity Low_complexity 1 26 0 1 1096 484 224 166 28 chr12 67007660 67007871 -54249659 - Lx9 LINE L1 0 7644 7405 1 1096 243 296 99 0 chr12 67008025 67008096 -54249434 - MER5B DNA MER1_type -3 175 98 1 1096 718 247 60 118 chr12 67008950 67009354 -54248176 + MTE2a LTR MaLR 1 419 0 1 1096 322 369 63 11 chr12 67009558 67009843 -54247687 - L2a LINE L2 -271 3155 2856 1 1096 352 272 191 28 chr12 67010846 67011024 -54246506 + HAL1-3A_ME LINE L1 1996 2202 -656 1 1096 1403 159 50 0 chr12 67011680 67011938 -54245592 - L1_Mm LINE L1 -811 5072 4802 1 1096 1162 152 9 0 chr12 67011937 67012147 -54245383 + L1_Mur2 LINE L1 5085 5296 -581 1 1096 8200 46 0 0 chr12 67012145 67013291 -54244239 - L1Md_F3 LINE L1 -573 6011 4866 2 1096 4356 39 26 2 chr12 67013291 67013831 -54243699 + L1Md_F3 LINE L1 6030 6582 -2 2 1096 7751 101 5 17 chr12 67013832 67015215 -54242315 + L1_Mus3 LINE L1 5289 6638 0 2 1096 35412 36 1 0 chr12 67016207 67022056 -54235474 + L1Md_T LINE L1 1 5589 -297 2 1096 9005 4 0 0 chr12 67022056 67023052 -54234478 + L1Md_T LINE L1 5590 6585 0 2 1096 375 248 23 23 chr12 67023573 67023705 -54233825 - Lx6 LINE L1 0 7460 7329 2 1096 516 304 108 5 chr12 67023891 67024086 -54233444 - ID_B1 SINE B4 -9 215 1 2 1096 958 302 55 4 chr12 67024556 67024812 -54232718 + MTD LTR MaLR 1 269 -150 2 1096 1130 291 128 79 chr12 67024924 67025782 -54231748 + MTC-int LTR MaLR 1 1300 -280 2 1096 620 132 9 0 chr12 67025782 67025888 -54231642 + (TTTC)n Simple_repeat Simple_repeat 3 109 0 2 1096 2328 168 40 20 chr12 67025934 67026389 -54231141 - Lx2B LINE L1 -2 6998 6535 2 1096 420 254 82 7 chr12 67026417 67026552 -54230978 + MTC-int LTR MaLR 942 1086 -172 2 1096 252 0 0 0 chr12 67026552 67026580 -54230950 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1096 1052 274 47 4 chr12 67026580 67026858 -54230672 + Lx9 LINE L1 6349 6638 -1006 3 1096 4309 222 146 31 chr12 67027004 67028205 -54229325 + Lx9 LINE L1 6306 7644 0 3 1096 1693 287 9 4 chr12 67028440 67028892 -54228638 + Lx7 LINE L1 6739 7192 -504 3 1096 23 33 0 0 chr12 67029548 67029578 -54227952 + AT_rich Low_complexity Low_complexity 1 30 0 3 1096 788 320 82 59 chr12 67029869 67030391 -54227139 - MER92B LTR ERV1 -7 629 96 3 1096 418 325 16 0 chr12 67032465 67032588 -54224942 - B1F SINE Alu -20 129 5 3 1096 288 0 0 0 chr12 67033285 67033317 -54224213 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1096 1003 51 0 14 chr12 67033865 67034004 -54223526 - L1Md_F3 LINE L1 -15 6569 6433 3 1096 254 0 0 0 chr12 67034005 67034034 -54223496 + L1Md_F3 LINE L1 6093 6121 -463 3 1096 198 0 0 0 chr12 67034130 67034152 -54223378 + (CG)n Simple_repeat Simple_repeat 1 22 0 4 1096 414 0 0 0 chr12 67034152 67034197 -54223333 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1096 30 69 0 0 chr12 67034674 67034732 -54222798 + AT_rich Low_complexity Low_complexity 1 58 0 4 1096 22 0 0 0 chr12 67035151 67035173 -54222357 + AT_rich Low_complexity Low_complexity 1 22 0 4 1096 379 321 81 3 chr12 67035175 67035311 -54222219 + B1F1 SINE Alu 7 148 -1 4 1096 264 128 0 0 chr12 67036813 67036852 -54220678 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1096 285 51 0 0 chr12 67036856 67036895 -54220635 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1096 6573 41 0 10 chr12 67036946 67037755 -54219775 - L1Md_F2 LINE L1 -2 6580 5780 4 1096 334 308 0 21 chr12 67037939 67038032 -54219498 + PB1D10 SINE Alu 26 116 -1 4 1096 31 26 0 0 chr12 67038212 67038250 -54219280 + AT_rich Low_complexity Low_complexity 1 38 0 4 1096 33 73 0 0 chr12 67038469 67038537 -54218993 + AT_rich Low_complexity Low_complexity 1 68 0 5 1096 198 0 0 0 chr12 67038764 67038786 -54218744 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 5 1096 2757 119 19 9 chr12 67038786 67039209 -54218321 - Lx3A LINE L1 -13 6968 6542 5 1096 4310 91 14 0 chr12 67039211 67039579 -54217951 + L1_Mur1 LINE L1 3487 3856 -2030 5 1096 180 0 0 0 chr12 67039579 67039599 -54217931 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1096 4310 91 14 0 chr12 67039599 67039854 -54217676 + L1_Mur1 LINE L1 3857 4118 -1768 5 1096 708 250 0 0 chr12 67039958 67040102 -54217428 + B1_Mur1 SINE Alu 6 149 0 5 1096 381 40 10 124 chr12 67040104 67040306 -54217224 + A-rich Low_complexity Low_complexity 2 180 0 5 1096 552 331 102 40 chr12 67040460 67040784 -54216746 + MTEa LTR MaLR 1 344 -35 5 1096 438 389 70 52 chr12 67040828 67041216 -54216314 + MTE-int LTR MaLR 15 409 -1171 5 1096 706 303 98 24 chr12 67041245 67041580 -54215950 - Lx8 LINE L1 -6 7467 7108 5 1096 265 216 68 0 chr12 67041761 67041835 -54215695 + MER67C LTR ERV1 84 162 -549 6 1096 284 390 32 16 chr12 67041922 67042047 -54215483 + MER67C LTR ERV1 277 403 -308 6 1096 630 144 0 43 chr12 67042098 67042214 -54215316 - B1_Mus2 SINE Alu 0 147 37 6 1096 621 318 44 48 chr12 67042229 67042500 -54215030 + B4 SINE B4 19 288 -4 6 1096 184 286 42 42 chr12 67042966 67043061 -54214469 + L2c LINE L2 3063 3157 -230 6 1096 207 0 0 0 chr12 67043974 67043997 -54213533 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1096 660 295 107 23 chr12 67045323 67045632 -54211898 - MLT1D LTR MaLR -114 391 57 6 1096 1035 297 4 11 chr12 67046972 67047241 -54210289 - MTD LTR MaLR -147 272 6 6 1096 62 63 0 0 chr12 67049681 67049792 -54207738 + AT_rich Low_complexity Low_complexity 1 111 0 6 1096 189 0 0 0 chr12 67050162 67050183 -54207347 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1096 219 69 0 0 chr12 67050872 67050901 -54206629 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1096 440 197 0 11 chr12 67051230 67051410 -54206120 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 7 1096 494 194 0 11 chr12 67051367 67051544 -54205986 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 7 1096 183 100 0 0 chr12 67052071 67052101 -54205429 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1096 934 80 22 0 chr12 67052187 67052324 -54205206 - L1Md_F2 LINE L1 -11 6571 6432 7 1096 2690 50 20 0 chr12 67052324 67052667 -54204863 + L1Md_F2 LINE L1 5695 6044 -538 7 1096 195 204 0 0 chr12 67052728 67052772 -54204758 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 1096 7241 103 26 5 chr12 67052859 67053959 -54203571 - Lx LINE L1 0 6654 5531 7 1096 5478 240 51 18 chr12 67056027 67057393 -54200137 - Lx6 LINE L1 -258 7202 5792 7 1096 8641 205 45 16 chr12 67057542 67058048 -54199482 - L1_Mur3 LINE L1 -2375 3505 2995 7 1096 249 33 0 0 chr12 67058048 67058078 -54199452 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 7 1096 8641 205 45 16 chr12 67058078 67058975 -54198555 - L1_Mur3 LINE L1 -2886 2994 2069 7 1096 207 69 0 0 chr12 67058975 67059004 -54198526 + (TGG)n Simple_repeat Simple_repeat 1 29 0 8 1096 8641 212 45 13 chr12 67059004 67060119 -54197411 - L1_Mur3 LINE L1 -3812 2068 905 7 1096 280 169 14 0 chr12 67060151 67060222 -54197308 - L1_Mur3 LINE L1 -6781 947 876 7 1096 451 120 0 13 chr12 67060219 67060295 -54197235 - Lx3A LINE L1 -400 6581 6507 8 1096 596 248 65 12 chr12 67060281 67060508 -54197022 - Lx7 LINE L1 -707 6989 6786 8 1096 204 40 0 0 chr12 67060999 67061024 -54196506 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1096 360 0 0 0 chr12 67061651 67061691 -54195839 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1096 21 0 0 0 chr12 67063215 67063236 -54194294 + AT_rich Low_complexity Low_complexity 1 21 0 8 1096 1051 76 27 20 chr12 67063245 67063392 -54194138 + B1_Mus1 SINE Alu 1 148 0 8 1096 222 59 77 19 chr12 67063392 67063444 -54194086 + A-rich Low_complexity Low_complexity 6 60 0 8 1096 31 0 0 0 chr12 67063465 67063496 -54194034 + AT_rich Low_complexity Low_complexity 1 31 0 8 1096 2232 113 2 161 chr12 67063742 67064207 -54193323 + ORR1B1 LTR MaLR 1 391 -3 8 1096 1255 295 34 27 chr12 67064824 67065757 -54191773 - L1_Mus4 LINE L1 -838 5798 4874 9 1096 711 193 82 32 chr12 67065765 67065984 -54191546 - L1_Mus4 LINE L1 -1651 4492 4263 9 1096 841 310 89 19 chr12 67065952 67066468 -54191062 - L1M3 LINE L1 -815 5325 4774 9 1096 345 148 0 0 chr12 67066497 67066551 -54190979 - HAL1-3A_ME LINE L1 -840 2018 1965 9 1096 2505 151 60 27 chr12 67066551 67067034 -54190496 - RLTR19 LTR ERVK 0 499 1 9 1096 21 36 0 0 chr12 67067154 67067182 -54190348 + AT_rich Low_complexity Low_complexity 1 28 0 9 1096 349 296 130 0 chr12 67067260 67067368 -54190162 - ID_B1 SINE B4 -3 221 100 9 1096 1862 193 39 63 chr12 67067365 67067974 -54189556 - RMER6C LTR ERVK -15 741 87 9 1096 26 0 0 0 chr12 67068498 67068524 -54189006 + AT_rich Low_complexity Low_complexity 1 26 0 9 1096 25 0 0 0 chr12 67068727 67068752 -54188778 + AT_rich Low_complexity Low_complexity 1 25 0 9 1096 263 308 0 48 chr12 67068859 67068985 -54188545 - L1MC4 LINE L1 -1 8041 7922 9 1096 4246 214 44 16 chr12 67069482 67070348 -54187182 + Lx5 LINE L1 6158 7047 -3 1 1096 346 301 85 45 chr12 67070606 67070853 -54186677 - L1M5 LINE L1 -1409 4737 4481 1 1096 1628 242 82 131 chr12 67070868 67071769 -54185761 + RLTR22_Mur LTR ERVK 1 869 -939 1 1096 327 100 0 0 chr12 67071859 67071873 -54185657 + (TTTTC)n Simple_repeat Simple_repeat 2 15 0 1 1096 1121 62 11 22 chr12 67071873 67072055 -54185475 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 1096 327 100 0 0 chr12 67072055 67072090 -54185440 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 1 1096 4961 78 5 5 chr12 67072113 67072779 -54184751 - L1_Mus3 LINE L1 0 6638 5973 1 1096 5698 89 126 2 chr12 67072779 67073877 -54183653 + L1_Mus3 LINE L1 4700 5989 -649 1 1096 441 300 105 58 chr12 67073941 67074132 -54183398 - RMER12 LTR ERVK 0 1322 1123 1 1096 505 297 33 26 chr12 67074474 67074626 -54182904 + B3A SINE B2 11 163 -35 1 1096 231 114 0 0 chr12 67075372 67075407 -54182123 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1096 22 80 0 0 chr12 67076027 67076077 -54181453 + AT_rich Low_complexity Low_complexity 1 50 0 1 1096 27 49 0 0 chr12 67076361 67076402 -54181128 + AT_rich Low_complexity Low_complexity 1 41 0 1 1096 332 127 32 0 chr12 67078167 67078230 -54179300 + CT-rich Low_complexity Low_complexity 3 67 0 1 1096 424 324 129 66 chr12 67078515 67078622 -54178908 + MLT2B4 LTR ERVL 119 247 -309 1 1096 1795 235 75 75 chr12 67078622 67079312 -54178218 + RMER6C LTR ERVK 1 690 0 1 1096 424 324 129 66 chr12 67079312 67079399 -54178131 + MLT2B4 LTR ERVL 248 327 -229 1 1096 629 267 112 5 chr12 67079399 67079595 -54177935 - ID_B1 SINE B4 -3 221 5 1 1096 424 324 129 66 chr12 67079595 67079809 -54177721 + MLT2B4 LTR ERVL 328 554 -2 1 1096 2496 246 130 3 chr12 67079821 67080514 -54177016 - Lx6 LINE L1 0 7460 6680 1 1096 234 91 0 0 chr12 67081022 67081055 -54176475 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1096 3393 218 62 35 chr12 67082552 67083671 -54173859 + L1_Rod LINE L1 1785 3037 -2810 1 1096 1232 269 25 3 chr12 67083695 67084019 -54173511 + RMER5 LTR ERV1 129 459 -75 1 1096 1070 251 83 61 chr12 67084045 67084224 -54173306 - ORR1D1 LTR MaLR -3 371 187 1 1096 456 19 0 0 chr12 67084224 67084277 -54173253 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1096 1070 251 83 61 chr12 67084277 67084457 -54173073 - ORR1D1 LTR MaLR -188 186 4 1 1096 22 0 0 0 chr12 67085260 67085282 -54172248 + AT_rich Low_complexity Low_complexity 1 22 0 1 1096 412 289 49 68 chr12 67085385 67085649 -54171881 - L1MA6 LINE L1 -38 6262 6004 1 1096 510 161 0 0 chr12 67086854 67086947 -54170583 + CT-rich Low_complexity Low_complexity 3 95 0 1 1096 229 289 117 50 chr12 67088100 67088220 -54169310 + L4 LINE RTE 399 526 -1503 1 1096 307 309 101 23 chr12 67088423 67088552 -54168978 + ID_B1 SINE B4 86 224 0 1 1096 601 282 170 8 chr12 67088556 67088803 -54168727 + B4A SINE B4 1 287 -5 1 1096 373 311 5 179 chr12 67089566 67089768 -54167762 - B3A SINE B2 -15 201 35 1 1096 372 350 7 130 chr12 67089810 67090102 -54167428 - B4A SINE B4 -35 257 2 1 1096 445 236 169 8 chr12 67090250 67090374 -54167156 - B1F SINE Alu 0 149 6 1 1096 1387 284 18 28 chr12 67090437 67090872 -54166658 + Lx6 LINE L1 7010 7440 -20 1 1096 210 37 0 0 chr12 67092950 67092977 -54164553 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1096 222 374 65 18 chr12 67094472 67094750 -54162780 - L2 LINE L2 -543 2876 2586 1 1096 1998 117 6 62 chr12 67094751 67095089 -54162441 + ORR1A2 LTR MaLR 1 319 -8 1 1096 601 356 93 46 chr12 67095118 67095686 -54161844 - L2 LINE L2 -859 2560 1966 1 1096 215 214 36 0 chr12 67096127 67096183 -54161347 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1096 738 313 41 71 chr12 67096438 67096830 -54160700 - MLT1B LTR MaLR 0 390 11 1 1096 1260 190 85 135 chr12 67096955 67097356 -54160174 + ORR1C2 LTR MaLR 4 384 0 1 1096 697 338 40 93 chr12 67097778 67098131 -54159399 - MER70B LTR ERVL -230 348 15 1 1096 530 357 113 37 chr12 67098154 67098669 -54158861 + Arthur1 DNA Tip100 198 751 -3196 1 1096 358 356 50 74 chr12 67098664 67098690 -54158840 - B4A SINE B4 0 292 273 1 1096 333 118 0 0 chr12 67098690 67098741 -54158789 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1096 358 356 50 74 chr12 67098741 67099011 -54158519 - B4A SINE B4 -20 272 3 1 1096 1384 159 60 0 chr12 67102234 67102486 -54155044 - Lx3C LINE L1 -2 6974 6708 1 1096 1915 184 71 3 chr12 67102525 67102890 -54154640 + RLTR17 LTR ERVK 204 593 -99 1 1096 21 0 0 0 chr12 67102916 67102937 -54154593 + AT_rich Low_complexity Low_complexity 1 21 0 1 1096 949 209 78 75 chr12 67103033 67103471 -54154059 + RMER3D-int LTR ERVK 97 869 -1973 1 1096 7226 188 51 51 chr12 67103471 67104313 -54153217 + RMER3D-int LTR ERVK 1014 1828 -1014 1 1096 597 217 265 74 chr12 67104313 67104622 -54152908 - RLTR9A LTR ERVK 0 368 1 1 1096 7226 188 51 51 chr12 67104622 67105608 -54151922 + RMER3D-int LTR ERVK 1829 2842 0 1 1096 1362 227 51 48 chr12 67105608 67105979 -54151551 + RLTR17 LTR ERVK 1 372 -320 1 1096 201 158 0 0 chr12 67105979 67106017 -54151513 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1096 333 0 0 0 chr12 67106827 67106864 -54150666 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1096 910 271 10 0 chr12 67107017 67107220 -54150310 - B3 SINE B2 0 216 12 1 1096 688 336 25 28 chr12 67107313 67107598 -54149932 + B4A SINE B4 1 284 -8 1 1096 33 73 0 0 chr12 67108035 67108103 -54149427 + AT_rich Low_complexity Low_complexity 1 68 0 1 1096 231 105 53 0 chr12 67108106 67108163 -54149367 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 1 1096 35 24 0 0 chr12 67108176 67108218 -54149312 + AT_rich Low_complexity Low_complexity 1 42 0 1 1096 525 88 0 0 chr12 67108290 67108370 -54149160 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 0 1116 109 1 0 chr12 67108727 67108887 -54148643 + B2_Mm2 SINE B2 1 170 -23 1 1097 293 24 49 0 chr12 67108887 67108928 -54148602 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1097 926 192 55 0 chr12 67108928 67108949 -54148581 + B2_Mm1t SINE B2 171 191 -2 1 1097 213 39 0 0 chr12 67109062 67109088 -54148442 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1097 384 261 67 26 chr12 67109123 67109316 -54148214 - L1M2 LINE L1 -1538 4605 4405 1 1097 371 305 99 22 chr12 67109351 67109673 -54147857 - L1MA6 LINE L1 -69 6231 5885 1 1097 1024 315 29 18 chr12 67109806 67110011 -54147519 + Lx3_Mus LINE L1 126 333 -7395 1 1097 6552 52 4 21 chr12 67110011 67110848 -54146682 + RLTR13B2 LTR ERVK 1 822 0 1 1097 1024 298 136 20 chr12 67110848 67111232 -54146298 + Lx3_Mus LINE L1 334 1025 -6703 1 1097 446 213 8 52 chr12 67111594 67111728 -54145802 + RLTR19-int LTR ERVK 1033 1160 -4977 1 1097 383 271 41 10 chr12 67111728 67111825 -54145705 + MTC-int LTR MaLR 466 565 -693 1 1097 819 294 127 8 chr12 67111810 67112077 -54145453 + MTC-int LTR MaLR 794 1092 -166 1 1097 2409 229 97 57 chr12 67112104 67113066 -54144464 + RLTR19-int LTR ERVK 1892 3194 -2943 1 1097 1492 220 36 50 chr12 67113320 67113761 -54143769 + RLTR19-int LTR ERVK 3597 4031 -2106 1 1097 1721 191 29 18 chr12 67113813 67114154 -54143376 + RLTR19-int LTR ERVK 4037 4381 -1756 1 1097 183 42 0 0 chr12 67114978 67115002 -54142528 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1 1097 2488 189 17 7 chr12 67115009 67115594 -54141936 + Lx3_Mus LINE L1 2560 3150 -2730 1 1097 10345 140 100 20 chr12 67115591 67118429 -54139101 + Lx3_Mus LINE L1 3878 7008 -1 1 1097 6680 242 48 13 chr12 67118442 67120522 -54137008 + Lx6 LINE L1 5286 7449 -11 1 1097 996 282 100 12 chr12 67120963 67121444 -54136086 + L1M2 LINE L1 3974 4496 -1647 1 1097 447 340 48 0 chr12 67121551 67121760 -54135770 + ID_B1 SINE B4 1 219 -5 1 1097 813 163 0 0 chr12 67122679 67122857 -54134673 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1097 276 189 0 0 chr12 67122894 67122968 -54134562 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1097 1018 104 34 23 chr12 67123654 67123831 -54133699 - Lx LINE L1 -5 6649 6471 1 1097 302 333 87 0 chr12 67123853 67124003 -54133527 - L1MC4 LINE L1 -1170 6872 6710 1 1097 598 145 0 8 chr12 67124276 67124394 -54133136 + Lx LINE L1 6528 6644 -10 1 1097 258 32 0 0 chr12 67124394 67124425 -54133105 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1097 1195 56 99 0 chr12 67124471 67124632 -54132898 + B2_Mm2 SINE B2 4 180 -15 1 1097 213 39 0 0 chr12 67124635 67124661 -54132869 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1097 246 218 49 37 chr12 67126234 67126315 -54131215 - L1MC2 LINE L1 -363 5981 5900 1 1097 32 81 0 0 chr12 67126491 67126565 -54130965 + AT_rich Low_complexity Low_complexity 1 74 0 1 1097 396 138 0 0 chr12 67126719 67126784 -54130746 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1097 734 290 154 7 chr12 67128029 67128334 -54129196 + MLT1A0 LTR MaLR 1 350 -15 1 1097 1467 233 24 45 chr12 67128334 67128716 -54128814 - ORR1D1 LTR MaLR 0 374 1 1 1097 22 0 0 0 chr12 67129095 67129117 -54128413 + AT_rich Low_complexity Low_complexity 1 22 0 1 1097 570 29 0 0 chr12 67130173 67130241 -54127289 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1 1097 296 184 26 26 chr12 67130251 67130329 -54127201 - Lx9 LINE L1 -8 7636 7559 1 1097 870 263 10 0 chr12 67130341 67130535 -54126995 + MTD LTR MaLR 216 411 -8 1 1097 247 319 154 8 chr12 67130824 67130941 -54126589 - MLT2E LTR ERVL -475 153 20 1 1097 185 341 68 53 chr12 67131270 67131403 -54126127 + MIR SINE MIR 86 220 -42 1 1097 1158 307 18 71 chr12 67131510 67131903 -54125627 - MTEb LTR MaLR -4 375 4 1 1097 24 0 0 0 chr12 67132149 67132173 -54125357 + AT_rich Low_complexity Low_complexity 1 24 0 1 1097 497 265 57 120 chr12 67132696 67133024 -54124506 + ORR1D2 LTR MaLR 6 377 -2 1 1097 473 240 42 67 chr12 67134165 67134330 -54123200 - B3 SINE B2 0 216 56 1 1097 2013 236 163 5 chr12 67134330 67134900 -54122630 - Lx6 LINE L1 -52 7408 6755 1 1097 235 245 0 0 chr12 67135997 67136050 -54121480 - RLTR19A LTR ERVK -152 344 292 1 1097 630 321 105 23 chr12 67136494 67136838 -54120692 - MTE2a LTR MaLR -6 373 2 1 1097 21 0 0 0 chr12 67136885 67136906 -54120624 + AT_rich Low_complexity Low_complexity 1 21 0 1 1097 368 282 47 0 chr12 67138298 67138383 -54119147 - RSINE1 SINE B4 -69 96 8 1 1097 4038 168 52 0 chr12 67138438 67139182 -54118348 + Lx3C LINE L1 6191 6973 -3 1 1097 23 33 0 0 chr12 67139182 67139212 -54118318 + AT_rich Low_complexity Low_complexity 1 30 0 1 1097 252 0 0 0 chr12 67139578 67139606 -54117924 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1097 1660 187 86 8 chr12 67139751 67140102 -54117428 + ORR1C1 LTR MaLR 1 378 0 1 1097 286 384 13 32 chr12 67140397 67140553 -54116977 + MER20 DNA MER1_type 12 164 -55 1 1097 22 0 0 0 chr12 67141514 67141536 -54115994 + AT_rich Low_complexity Low_complexity 1 22 0 2 1097 523 90 44 11 chr12 67142291 67142381 -54115149 - L1_Mus3 LINE L1 -10 6628 6536 2 1097 189 0 0 0 chr12 67142400 67142421 -54115109 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1097 252 353 0 0 chr12 67142426 67142494 -54115036 - ID_B1 SINE B4 -54 170 103 2 1097 440 288 25 8 chr12 67142579 67142698 -54114832 + B1_Mur1 SINE Alu 5 125 -24 2 1097 416 322 182 26 chr12 67142902 67143115 -54114415 + LTR69 LTR ERVL 1 249 -339 2 1097 534 340 6 19 chr12 67143115 67143277 -54114253 + B3A SINE B2 3 162 -36 2 1097 1675 154 244 19 chr12 67143280 67143644 -54113886 - RLTR41 LTR ERV1 0 446 1 2 1097 671 87 10 0 chr12 67143649 67143753 -54113777 + (TA)n Simple_repeat Simple_repeat 1 105 0 2 1097 515 314 121 59 chr12 67143758 67144001 -54113529 + LTR69 LTR ERVL 265 530 -58 2 1097 3124 75 0 0 chr12 67144001 67144401 -54113129 - MTB LTR MaLR 0 400 1 2 1097 515 314 121 59 chr12 67144401 67144462 -54113068 + LTR69 LTR ERVL 531 588 0 2 1097 398 299 117 31 chr12 67144767 67145252 -54112278 - L1M4 LINE L1 -2378 3768 3249 2 1097 7768 77 5 16 chr12 67145245 67146482 -54111048 - L1_Mus3 LINE L1 0 6638 5418 2 1097 2298 141 0 29 chr12 67146484 67146865 -54110665 + L1_Mm LINE L1 4623 4992 -891 2 1097 244 327 27 0 chr12 67146985 67147095 -54110435 + L1MA4 LINE L1 3771 3883 -2260 2 1097 437 296 106 11 chr12 67147169 67147442 -54110088 - L1M2 LINE L1 -1795 4348 4050 2 1097 264 320 34 17 chr12 67147441 67147619 -54109911 + L1MA4 LINE L1 5741 5921 -379 2 1097 582 303 145 20 chr12 67147680 67148337 -54109193 + L1_Mur3 LINE L1 4019 4757 -1123 2 1097 271 270 102 41 chr12 67148413 67148495 -54109035 + L1_Rod LINE L1 4710 4794 -1053 2 1097 580 298 104 10 chr12 67148495 67148688 -54108842 + B3 SINE B2 1 211 -5 2 1097 372 264 59 8 chr12 67148688 67148828 -54108702 + L1_Rod LINE L1 4795 5006 -1140 2 1097 554 115 0 0 chr12 67148845 67148932 -54108598 + L1_Mur2 LINE L1 4538 4624 -1253 2 1097 929 264 168 26 chr12 67149005 67149653 -54107877 + L1_Rod LINE L1 5006 5814 -486 2 1097 1818 127 157 24 chr12 67149856 67150194 -54107336 - RLTR9A2 LTR ERVK 0 383 1 2 1097 433 318 77 59 chr12 67150389 67150802 -54106728 - RMER15 LTR ERVL -91 484 6 2 1097 213 39 0 0 chr12 67151184 67151210 -54106320 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1097 607 312 23 6 chr12 67151498 67151672 -54105858 + B3A SINE B2 2 178 -20 2 1097 21 36 0 0 chr12 67151672 67151700 -54105830 + AT_rich Low_complexity Low_complexity 1 28 0 2 1097 238 364 0 85 chr12 67152610 67152751 -54104779 + MIRb SINE MIR 117 245 -23 2 1097 954 291 76 44 chr12 67153218 67153534 -54103996 - ORR1D2 LTR MaLR -39 331 6 2 1097 326 299 28 73 chr12 67153819 67153996 -54103534 - Lx8 LINE L1 -74 7399 7231 2 1097 267 206 40 20 chr12 67155703 67155802 -54101728 + (TCTCTG)n Simple_repeat Simple_repeat 5 105 0 2 1097 423 149 0 0 chr12 67155807 67155881 -54101649 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1097 326 330 57 0 chr12 67155881 67156057 -54101473 - L1MC4 LINE L1 -130 7912 7727 2 1097 22 0 0 0 chr12 67157306 67157328 -54100202 + AT_rich Low_complexity Low_complexity 1 22 0 2 1097 189 74 0 0 chr12 67157372 67157399 -54100131 + (CCCTG)n Simple_repeat Simple_repeat 4 30 0 2 1097 2440 271 73 86 chr12 67157438 67158424 -54099106 + RMER1C Other Other 359 1331 -11 2 1097 384 77 0 0 chr12 67158427 67158479 -54099051 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 2 1097 268 358 82 33 chr12 67159039 67159221 -54098309 + LTR50 LTR ERVL 1 191 -604 2 1097 239 106 0 41 chr12 67159221 67159270 -54098260 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 2 1097 882 0 0 0 chr12 67160041 67160139 -54097391 + (GAA)n Simple_repeat Simple_repeat 1 98 0 2 1097 5809 106 27 1 chr12 67162549 67163415 -54094115 + Lx3_Mus LINE L1 6118 7005 -4 2 1097 1100 151 11 16 chr12 67163438 67163626 -54093904 + B2_Mm1t SINE B2 2 188 -5 2 1097 235 167 0 18 chr12 67163644 67163699 -54093831 + A-rich Low_complexity Low_complexity 5 58 0 2 1097 9613 48 5 9 chr12 67163705 67164895 -54092635 + MERVL-int LTR ERVL 4172 5356 -129 2 1097 340 139 26 53 chr12 67165013 67165089 -54092441 + ORR1A3-int LTR MaLR 567 640 -1323 2 1097 314 0 0 0 chr12 67165089 67165127 -54092403 + MERVL-int LTR ERVL 5448 5485 0 2 1097 2668 77 104 136 chr12 67165127 67165636 -54091894 + MT2_Mm LTR ERVL 1 493 0 2 1097 371 167 14 0 chr12 67165636 67165708 -54091822 + B2_Mm1t SINE B2 118 190 -3 2 1097 182 62 31 0 chr12 67165750 67165782 -54091748 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1097 425 315 76 22 chr12 67166305 67166529 -54091001 + L1VL4 LINE L1 180 415 -5887 2 1097 276 214 18 0 chr12 67166531 67166587 -54090943 - RMER17B LTR ERVK 0 958 902 2 1097 25145 134 10 3 chr12 67166589 67171631 -54085899 + L1_Mus3 LINE L1 1549 6630 -8 2 1097 1321 214 206 48 chr12 67172281 67173004 -54084526 - RMER6C LTR ERVK 0 720 85 2 1097 207 114 0 0 chr12 67173059 67173094 -54084436 + (TAG)n Simple_repeat Simple_repeat 1 35 0 2 1097 558 308 70 5 chr12 67173336 67173522 -54084008 - B3 SINE B2 -17 199 2 2 1097 540 0 0 0 chr12 67173817 67173877 -54083653 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1097 375 312 70 35 chr12 67174456 67174715 -54082815 + L1MA6 LINE L1 5993 6260 -40 2 1097 387 0 0 0 chr12 67174806 67174849 -54082681 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1097 1132 65 0 0 chr12 67174852 67174991 -54082539 - B1_Mm SINE Alu -4 143 5 2 1097 252 278 103 22 chr12 67175055 67175191 -54082339 + MER2 DNA MER2_type 25 171 -174 2 1097 21 82 0 0 chr12 67175252 67175301 -54082229 + AT_rich Low_complexity Low_complexity 1 49 0 2 1097 414 0 0 0 chr12 67175725 67175771 -54081759 + (T)n Simple_repeat Simple_repeat 1 46 0 2 1097 1221 41 0 0 chr12 67175771 67175918 -54081612 - B1_Mm SINE Alu 0 147 1 2 1097 255 61 0 0 chr12 67176058 67176091 -54081439 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1097 234 220 0 0 chr12 67176511 67176570 -54080960 + (TATG)n Simple_repeat Simple_repeat 3 61 0 2 1097 366 312 60 21 chr12 67177423 67177705 -54079825 + L1M3 LINE L1 5011 5303 -837 2 1097 3303 56 2 12 chr12 67177775 67178193 -54079337 + L1_Mus1 LINE L1 6145 6558 -9 2 1097 3498 164 22 81 chr12 67178204 67179753 -54077777 + L1Md_F LINE L1 164 1651 -2166 2 1097 6971 132 8 13 chr12 67179749 67181418 -54076112 - L1VL4 LINE L1 -1634 1925 264 2 1097 1910 91 31 60 chr12 67181418 67181735 -54075795 + L1Md_F2 LINE L1 6275 6582 0 2 1097 217 375 24 24 chr12 67181799 67181881 -54075649 + ID4_ SINE ID 2 83 0 2 1097 646 298 16 26 chr12 67181994 67182269 -54075261 - L1VL4 LINE L1 -5855 447 11 2 1097 232 268 46 58 chr12 67182603 67182690 -54074840 + ORR1D2 LTR MaLR 276 361 -9 2 1097 296 316 145 0 chr12 67183072 67183224 -54074306 + LTR52 LTR ERVL 165 338 -83 2 1097 360 0 0 0 chr12 67184072 67184112 -54073418 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2 1097 1212 28 0 0 chr12 67184112 67184256 -54073274 - B1_Mus2 SINE Alu -3 144 1 2 1097 28 61 0 0 chr12 67185072 67185121 -54072409 + AT_rich Low_complexity Low_complexity 1 49 0 2 1097 5758 76 13 8 chr12 67185127 67185900 -54071630 - L1_Mus2 LINE L1 -2 6564 5788 2 1097 1334 55 21 27 chr12 67185924 67186111 -54071419 - L1_Mus1 LINE L1 0 6567 6382 2 1097 2791 75 0 24 chr12 67186111 67186491 -54071039 + L1_Mus1 LINE L1 5960 6330 -237 2 1097 3913 107 0 4 chr12 67186489 67187050 -54070480 - L1Md_F LINE L1 -86 5797 5239 2 1097 5718 111 6 20 chr12 67187047 67188012 -54069518 - L1Md_F LINE L1 -3770 2113 1190 2 1097 1079 102 0 0 chr12 67188012 67188159 -54069371 - B1_Mus1 SINE Alu 0 148 2 2 1097 2872 214 31 175 chr12 67188159 67188998 -54068532 - L1Md_F LINE L1 -5411 1205 385 2 1097 24 53 0 0 chr12 67189263 67189301 -54068229 + AT_rich Low_complexity Low_complexity 1 38 0 2 1097 287 284 25 0 chr12 67189500 67189581 -54067949 + Lx9 LINE L1 6857 6939 -705 2 1097 671 172 9 0 chr12 67189579 67189695 -54067835 + L1_Mur2 LINE L1 5114 5230 -647 2 1097 25 0 0 0 chr12 67189930 67189955 -54067575 + AT_rich Low_complexity Low_complexity 1 25 0 2 1097 22 0 0 0 chr12 67190176 67190198 -54067332 + AT_rich Low_complexity Low_complexity 1 22 0 2 1097 8643 186 63 14 chr12 67190227 67192917 -54064613 + Lx5 LINE L1 4234 7058 0 2 1097 1663 255 25 17 chr12 67193589 67193992 -54063538 - MTD LTR MaLR -10 409 4 2 1097 405 81 0 0 chr12 67194091 67194153 -54063377 + (TTA)n Simple_repeat Simple_repeat 1 62 0 2 1097 1820 159 23 14 chr12 67194219 67194563 -54062967 - RLTR31_Mm LTR ERVK -214 347 1 2 1097 1699 202 27 49 chr12 67194565 67195013 -54062517 - RMER3D-int LTR ERVK -2 2840 2403 2 1097 1156 103 5 11 chr12 67195078 67195264 -54062266 - L1Md_F2 LINE L1 0 6582 6398 2 1097 238 312 63 11 chr12 67195269 67195460 -54062070 - L1M2 LINE L1 -1105 5038 4838 2 1097 448 278 47 0 chr12 67195849 67195991 -54061539 + MER45B DNA Tip100 55 203 -837 2 1097 2571 106 19 0 chr12 67198154 67198514 -54059016 + L1_Mus4 LINE L1 5884 6250 -386 2 1097 371 103 0 0 chr12 67198514 67198582 -54058948 + L1_Mus4 LINE L1 6567 6634 -2 2 1097 950 178 10 5 chr12 67198670 67198862 -54058668 - Lx LINE L1 -8 6646 6454 2 1097 2451 55 3 0 chr12 67199923 67200234 -54057296 - L1Md_F2 LINE L1 -3 6579 6268 2 1097 3274 69 12 0 chr12 67200253 67200671 -54056859 - L1_Mus1 LINE L1 -11 6556 6134 2 1097 449 172 11 0 chr12 67200858 67200951 -54056579 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 1097 268 336 22 37 chr12 67201173 67201309 -54056221 - MIRb SINE MIR -110 158 25 2 1097 303 28 0 0 chr12 67202394 67202430 -54055100 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1097 1802 217 136 22 chr12 67202703 67203202 -54054328 + RLTR12A LTR ERVK 1 556 -12 2 1097 1728 297 68 24 chr12 67203623 67204334 -54053196 - Lx9 LINE L1 -149 7495 6754 2 1097 37785 16 1 8 chr12 67204336 67209549 -54047981 + L1Md_A LINE L1 412 5586 -297 2 1097 8730 18 0 0 chr12 67209549 67210543 -54046987 + L1Md_A LINE L1 5587 6580 -2 2 1097 1054 342 31 8 chr12 67210543 67210929 -54046601 - Lx9 LINE L1 -883 6761 6367 2 1097 668 107 9 0 chr12 67210973 67211085 -54046445 + (TG)n Simple_repeat Simple_repeat 2 114 0 2 1097 570 271 203 47 chr12 67211492 67211979 -54045551 - Zaphod DNA Tip100 -3053 978 416 2 1097 22 0 0 0 chr12 67212805 67212827 -54044703 + AT_rich Low_complexity Low_complexity 1 22 0 2 1097 357 162 0 0 chr12 67212844 67212912 -54044618 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1097 675 237 15 0 chr12 67212914 67213045 -54044485 + MTD LTR MaLR 49 181 -238 3 1097 265 197 15 0 chr12 67213658 67213724 -54043806 - B3 SINE B2 0 216 150 3 1097 472 321 50 7 chr12 67213854 67213995 -54043535 + RSINE1 SINE B4 9 155 -10 3 1097 235 225 56 0 chr12 67214727 67214798 -54042732 + MADE2 DNA Mariner 6 80 0 3 1097 238 351 129 17 chr12 67214942 67215058 -54042472 + Lx8 LINE L1 7166 7294 -179 3 1097 287 288 0 0 chr12 67215076 67215149 -54042381 + ID4 SINE ID 9 81 -2 3 1097 6741 70 11 28 chr12 67215265 67216467 -54041063 - Lx3_Mus LINE L1 -827 6182 5002 3 1097 433 125 0 33 chr12 67216477 67216568 -54040962 + Lx3_Mus LINE L1 6922 7009 0 3 1097 252 111 0 0 chr12 67216842 67216887 -54040643 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1097 189 0 0 0 chr12 67217193 67217214 -54040316 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 3 1097 180 0 0 0 chr12 67217751 67217771 -54039759 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1097 418 297 9 129 chr12 67218304 67218528 -54039002 + B3A SINE B2 1 197 -1 3 1097 26 50 0 0 chr12 67218546 67218586 -54038944 + AT_rich Low_complexity Low_complexity 1 40 0 3 1097 228 225 0 90 chr12 67218968 67219046 -54038484 + L3 LINE CR1 854 924 -3565 3 1097 242 281 16 0 chr12 67219898 67219962 -54037568 - ORR1D1 LTR MaLR -302 72 8 3 1097 180 0 0 0 chr12 67220316 67220336 -54037194 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1097 736 277 134 30 chr12 67222669 67222937 -54034593 - ORR1D2 LTR MaLR 0 370 75 3 1097 310 291 18 55 chr12 67223184 67223293 -54034237 + RSINE1 SINE B4 61 165 0 3 1097 393 74 0 0 chr12 67223477 67223531 -54033999 - L1_Mm LINE L1 -1486 4397 4344 3 1097 4418 82 10 3 chr12 67223531 67224133 -54033397 + L1Md_F2 LINE L1 5977 6582 0 3 1097 849 38 0 0 chr12 67225416 67225522 -54032008 + B2_Mm2 SINE B2 2 107 -88 3 1097 398 52 0 0 chr12 67225676 67225734 -54031796 - Lx2 LINE L1 -3 6994 6937 3 1097 402 121 0 0 chr12 67225734 67225800 -54031730 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1097 574 202 115 171 chr12 67225800 67226086 -54031444 - RMER1C Other Other -33 1309 1040 3 1097 337 275 85 30 chr12 67226123 67226359 -54031171 - L1ME2 LINE L1 -267 5897 5649 3 1097 343 293 63 103 chr12 67226454 67226786 -54030744 - L1ME2 LINE L1 -621 5543 5218 3 1097 7480 45 2 1 chr12 67226808 67227718 -54029812 - L1Md_F2 LINE L1 -16 6566 5656 3 1097 6999 41 0 0 chr12 67227716 67228552 -54028978 + L1Md_F2 LINE L1 4836 5671 -212 3 1097 24 0 0 0 chr12 67228644 67228668 -54028862 + AT_rich Low_complexity Low_complexity 1 24 0 3 1097 283 246 0 15 chr12 67228723 67228789 -54028741 - RSINE1 SINE B4 -97 68 4 3 1097 378 316 31 0 chr12 67229052 67229150 -54028380 - ID_B1 SINE B4 -75 149 49 3 1097 555 285 60 75 chr12 67229214 67229415 -54028115 - B3A SINE B2 0 198 1 3 1097 878 161 32 13 chr12 67230341 67230498 -54027032 - RMER6B LTR ERVK 0 461 302 3 1097 394 77 140 21 chr12 67230498 67230591 -54026939 + L1Md_F2 LINE L1 6474 6577 -5 3 1097 26 0 0 0 chr12 67230638 67230664 -54026866 + AT_rich Low_complexity Low_complexity 1 26 0 3 1097 1700 132 51 0 chr12 67230665 67230938 -54026592 - RMER6B LTR ERVK -174 287 1 3 1097 200 281 0 0 chr12 67231564 67231621 -54025909 + (TAGG)n Simple_repeat Simple_repeat 1 57 0 3 1097 425 268 0 40 chr12 67232538 67232639 -54024891 - B3 SINE B2 -82 134 38 3 1097 797 228 73 8 chr12 67232666 67232914 -54024616 - Lx7 LINE L1 -6 7690 7427 3 1097 24 85 0 0 chr12 67233514 67233573 -54023957 + AT_rich Low_complexity Low_complexity 1 59 0 3 1097 305 225 123 18 chr12 67233836 67233946 -54023584 - Lx7 LINE L1 -2 7694 7588 3 1097 5275 205 51 8 chr12 67233944 67235781 -54021749 - Lx7 LINE L1 -1019 6677 4759 3 1097 4294 170 54 4 chr12 67235782 67236546 -54020984 - Lx2 LINE L1 -1 6996 6193 3 1097 198 0 0 0 chr12 67236546 67236568 -54020962 + (TTG)n Simple_repeat Simple_repeat 3 24 0 3 1097 4294 170 54 4 chr12 67236568 67236599 -54020931 - Lx2 LINE L1 -805 6192 6161 3 1097 614 147 0 0 chr12 67236600 67236702 -54020828 - MusHAL1 LINE L1 -472 2240 2139 3 1097 21 57 0 0 chr12 67237018 67237053 -54020477 + AT_rich Low_complexity Low_complexity 1 35 0 3 1098 585 0 0 0 chr12 67240174 67240239 -54017291 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1098 1985 319 65 37 chr12 67240564 67240785 -54016745 - Lx8 LINE L1 -5 7468 7223 3 1098 2121 216 201 16 chr12 67240785 67241407 -54016123 - RMER19A LTR ERVK 0 737 1 3 1098 1985 319 65 37 chr12 67241407 67242152 -54015378 - Lx8 LINE L1 -251 7222 6475 3 1098 853 295 122 3 chr12 67242151 67242535 -54014995 + Lx8 LINE L1 7038 7467 -6 3 1098 21 57 0 0 chr12 67242670 67242705 -54014825 + AT_rich Low_complexity Low_complexity 1 35 0 3 1098 1057 81 7 0 chr12 67242920 67243068 -54014462 - L1_Mus2 LINE L1 -1 6565 6417 3 1098 3589 93 12 6 chr12 67243068 67243572 -54013958 + L1_Mus2 LINE L1 5931 6437 -129 3 1098 198 0 0 0 chr12 67243879 67243901 -54013629 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1098 21 0 0 0 chr12 67245512 67245533 -54011997 + AT_rich Low_complexity Low_complexity 1 21 0 3 1098 775 284 67 67 chr12 67245546 67245814 -54011716 + B4 SINE B4 2 269 -23 3 1098 297 0 0 0 chr12 67245815 67245848 -54011682 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1098 180 111 0 0 chr12 67246357 67246384 -54011146 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1098 234 0 0 0 chr12 67246928 67246954 -54010576 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1098 1082 73 0 0 chr12 67246999 67247136 -54010394 - B1_Mm SINE Alu -10 137 1 3 1098 22 0 0 0 chr12 67248809 67248831 -54008699 + AT_rich Low_complexity Low_complexity 1 22 0 3 1098 853 106 0 7 chr12 67248836 67248979 -54008551 + L1_Mus4 LINE L1 6485 6626 -10 3 1098 210 37 0 0 chr12 67249299 67249326 -54008204 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1098 207 195 0 0 chr12 67249465 67249506 -54008024 + A-rich Low_complexity Low_complexity 3 43 0 3 1098 14768 89 5 3 chr12 67250028 67252757 -54004773 - L1_Mus1 LINE L1 -2 6565 3833 3 1098 29 28 0 0 chr12 67253196 67253232 -54004298 + AT_rich Low_complexity Low_complexity 1 36 0 3 1098 213 39 0 0 chr12 67253495 67253521 -54004009 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1098 218 193 52 17 chr12 67253530 67253588 -54003942 + CT-rich Low_complexity Low_complexity 5 64 0 3 1098 303 222 0 0 chr12 67253739 67253811 -54003719 - Lx9 LINE L1 -36 7608 7537 3 1098 520 230 25 42 chr12 67253834 67253952 -54003578 + B1F SINE Alu 32 147 -2 3 1098 1504 62 16 0 chr12 67254727 67254919 -54002611 + B2_Mm2 SINE B2 1 195 0 3 1098 502 79 188 98 chr12 67254923 67255035 -54002495 + RMER6-int LTR ERVK 395 516 -2661 3 1098 267 128 0 41 chr12 67255041 67255090 -54002440 + RMER6-int LTR ERVK 700 746 -2431 3 1098 596 284 80 27 chr12 67255220 67255408 -54002122 + B3A SINE B2 1 198 0 3 1098 715 313 73 0 chr12 67255431 67255610 -54001920 + B3 SINE B2 1 192 -24 3 1098 748 331 94 13 chr12 67256671 67256989 -54000541 - MLT1A0 LTR MaLR -2 363 20 3 1098 339 85 0 0 chr12 67257247 67257294 -54000236 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 3 1098 1188 41 0 0 chr12 67257294 67257440 -54000090 - B1_Mm SINE Alu 0 147 2 3 1098 194 318 46 23 chr12 67257694 67257781 -53999749 + L4 LINE RTE 1759 1847 -182 3 1098 478 340 6 25 chr12 67258055 67258212 -53999318 + RSINE1 SINE B4 2 155 -10 3 1098 24 0 0 0 chr12 67258252 67258276 -53999254 + AT_rich Low_complexity Low_complexity 1 24 0 3 1098 207 312 51 13 chr12 67258394 67258472 -53999058 + MIR SINE MIR 175 255 -7 3 1098 22 0 0 0 chr12 67259195 67259217 -53998313 + AT_rich Low_complexity Low_complexity 1 22 0 3 1098 588 209 71 14 chr12 67259846 67259987 -53997543 + Lx9 LINE L1 7199 7347 -297 3 1098 1104 121 11 28 chr12 67259987 67260143 -53997387 + B2_Mm2 SINE B2 6 158 -37 3 1098 279 0 0 0 chr12 67260143 67260174 -53997356 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 1098 1104 121 11 28 chr12 67260174 67260196 -53997334 + B2_Mm2 SINE B2 159 181 -14 3 1098 875 172 65 54 chr12 67260196 67260473 -53997057 + Lx9 LINE L1 7365 7644 0 3 1098 684 36 0 0 chr12 67260661 67260744 -53996786 + (TC)n Simple_repeat Simple_repeat 1 83 0 3 1098 333 0 0 0 chr12 67260744 67260780 -53996750 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1098 180 0 0 0 chr12 67261699 67261719 -53995811 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1098 822 287 61 97 chr12 67262211 67262544 -53994986 + ORR1E LTR MaLR 6 343 -35 3 1098 3999 145 101 9 chr12 67262544 67262719 -53994811 + RMER19A LTR ERVK 1 181 -556 3 1098 405 0 0 0 chr12 67262719 67262764 -53994766 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1098 3999 145 101 9 chr12 67262764 67263263 -53994267 + RMER19A LTR ERVK 182 737 0 3 1098 822 281 56 102 chr12 67263263 67263284 -53994246 + ORR1E LTR MaLR 339 359 0 3 1098 477 353 45 48 chr12 67264292 67264495 -53993035 - B4 SINE B4 0 292 89 3 1098 636 295 20 35 chr12 67264495 67264695 -53992835 - B3A SINE B2 0 198 2 3 1098 477 353 45 48 chr12 67264695 67264780 -53992750 - B4 SINE B4 -204 88 6 3 1098 386 345 121 16 chr12 67264893 67265380 -53992150 - MER34 LTR ERV1 -2 540 3 3 1098 225 344 69 23 chr12 67265584 67265715 -53991815 + MIR3 SINE MIR 19 155 -53 3 1098 38516 4 0 0 chr12 67265871 67271235 -53986295 + L1Md_A LINE L1 222 5586 -297 3 1098 9039 1 0 0 chr12 67271235 67272230 -53985300 + L1Md_A LINE L1 5587 6581 -1 3 1098 518 260 144 23 chr12 67272487 67272660 -53984870 + B3A SINE B2 5 198 0 3 1098 644 36 0 12 chr12 67272691 67272721 -53984809 + (GAA)n Simple_repeat Simple_repeat 3 32 0 3 1098 1046 102 11 11 chr12 67272721 67272899 -53984631 + (GGA)n Simple_repeat Simple_repeat 3 180 0 3 1098 644 36 0 12 chr12 67272899 67272952 -53984578 + (GAA)n Simple_repeat Simple_repeat 3 55 0 3 1098 290 228 100 12 chr12 67272986 67273066 -53984464 - 5S rRNA rRNA -34 87 1 3 1098 970 152 20 0 chr12 67273066 67273217 -53984313 + RMER1C Other Other 1040 1193 -149 3 1098 826 109 7 7 chr12 67273218 67273356 -53984174 + (TTC)n Simple_repeat Simple_repeat 3 140 0 3 1098 297 115 19 19 chr12 67273369 67273422 -53984108 - RMER1C Other Other -1080 262 210 3 1098 360 0 0 0 chr12 67273446 67273486 -53984044 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1098 378 0 0 0 chr12 67273496 67273538 -53983992 + (CAGGA)n Simple_repeat Simple_repeat 2 43 0 4 1098 3156 231 62 101 chr12 67273597 67274576 -53982954 + RMER1C Other Other 259 1338 -4 4 1098 302 317 21 21 chr12 67274943 67275088 -53982442 + L1MD LINE L1 2809 2953 -3193 4 1098 445 104 26 0 chr12 67275455 67275532 -53981998 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1098 318 338 186 24 chr12 67275538 67275947 -53981583 + Lx8 LINE L1 6959 7433 -40 4 1098 2021 174 41 16 chr12 67275967 67276335 -53981195 + ORR1C2 LTR MaLR 8 384 0 4 1098 1437 300 111 13 chr12 67276468 67277025 -53980505 + Lx8 LINE L1 6394 7005 -468 4 1098 425 326 56 59 chr12 67277052 67277410 -53980120 + L1M5 LINE L1 3356 3712 -2434 4 1098 245 111 44 0 chr12 67277412 67277457 -53980073 + T-rich Low_complexity Low_complexity 4 50 0 4 1098 27 29 0 0 chr12 67277462 67277496 -53980034 + AT_rich Low_complexity Low_complexity 1 34 0 4 1098 1301 92 16 5 chr12 67277504 67277690 -53979840 - B2_Mm2 SINE B2 -7 188 1 4 1098 685 343 69 39 chr12 67277758 67278122 -53979408 - RLTR18B LTR ERVK 0 512 138 4 1098 598 313 29 61 chr12 67278095 67278405 -53979125 - RLTR18B LTR ERVK -310 306 7 4 1098 22 0 0 0 chr12 67278684 67278706 -53978824 + AT_rich Low_complexity Low_complexity 1 22 0 4 1098 350 273 79 0 chr12 67278714 67278867 -53978663 + L1M5 LINE L1 5342 5512 -652 4 1098 549 301 20 7 chr12 67278924 67279071 -53978459 + RSINE1 SINE B4 3 151 -14 4 1098 189 147 0 0 chr12 67280097 67280131 -53977399 + (TATG)n Simple_repeat Simple_repeat 1 34 0 4 1098 1617 307 96 50 chr12 67280321 67281148 -53976382 + Lx8 LINE L1 6376 7240 -233 4 1098 210 302 26 8 chr12 67281425 67281542 -53975988 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 4 1098 226 263 0 17 chr12 67282073 67282131 -53975399 - BLACKJACK DNA AcHobo -5 2939 2883 4 1098 518 325 12 43 chr12 67282377 67282541 -53974989 - B3A SINE B2 0 198 40 4 1098 4862 160 30 28 chr12 67282590 67283268 -53974262 - Lx3C LINE L1 -457 6519 5846 4 1098 2857 78 35 2 chr12 67283268 67283666 -53973864 + IAPLTR2a LTR ERVK 1 411 0 4 1098 4862 127 50 23 chr12 67283666 67284138 -53973392 - Lx3C LINE L1 -38 5848 5356 4 1098 819 123 13 13 chr12 67284143 67284300 -53973230 - L1_Mus2 LINE L1 0 6566 6410 4 1098 1800 59 0 0 chr12 67284301 67284523 -53973007 + L1_Mus2 LINE L1 6203 6424 -142 4 1098 1537 119 47 12 chr12 67284520 67284775 -53972755 - Lx3C LINE L1 -514 5363 5100 4 1098 414 0 0 0 chr12 67285148 67285194 -53972336 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1098 282 291 21 0 chr12 67285233 67285340 -53972190 - B1_Mus1 SINE Alu -30 119 2 4 1098 490 289 142 25 chr12 67285355 67285526 -53972004 - B3A SINE B2 0 216 27 4 1098 369 0 0 0 chr12 67285532 67285573 -53971957 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1098 1049 58 0 0 chr12 67285573 67285711 -53971819 - B1_Mus1 SINE Alu 0 148 11 4 1098 261 0 0 0 chr12 67286002 67286031 -53971499 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 4 1098 21 0 0 0 chr12 67286241 67286262 -53971268 + AT_rich Low_complexity Low_complexity 1 21 0 4 1098 35 54 0 0 chr12 67286280 67286336 -53971194 + AT_rich Low_complexity Low_complexity 1 56 0 4 1098 485 196 0 64 chr12 67286927 67287036 -53970494 + B4A SINE B4 171 272 -20 4 1098 371 151 31 31 chr12 67287064 67287194 -53970336 + (CAGAGA)n Simple_repeat Simple_repeat 1 130 0 4 1098 216 0 0 0 chr12 67287577 67287601 -53969929 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1098 480 295 23 30 chr12 67287749 67287882 -53969648 + B3A SINE B2 1 132 -66 4 1098 351 0 0 0 chr12 67287966 67288005 -53969525 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1098 21 36 0 0 chr12 67288624 67288652 -53968878 + AT_rich Low_complexity Low_complexity 1 28 0 4 1098 323 323 85 50 chr12 67289322 67289521 -53968009 - MER20 DNA MER1_type -12 207 2 4 1098 2754 109 35 8 chr12 67289524 67289920 -53967610 - MTB_Mm LTR MaLR 0 407 1 4 1098 358 345 69 23 chr12 67290943 67291118 -53966412 - MLT1J-int LTR MaLR -36 1351 1169 4 1098 3145 62 0 2 chr12 67291769 67292170 -53965360 - MTB LTR MaLR 0 400 1 4 1098 347 282 22 108 chr12 67292345 67292484 -53965046 - B4A SINE B4 -2 290 164 4 1098 797 309 126 64 chr12 67292507 67292974 -53964556 - MER67D LTR ERV1 -4 510 15 4 1098 992 315 61 6 chr12 67293238 67293567 -53963963 - ORR1E LTR MaLR -12 347 1 4 1098 23 33 0 0 chr12 67294661 67294691 -53962839 + AT_rich Low_complexity Low_complexity 1 30 0 4 1098 23 33 0 0 chr12 67294720 67294750 -53962780 + AT_rich Low_complexity Low_complexity 1 30 0 4 1098 303 239 14 0 chr12 67295212 67295227 -53962303 - HAL1-3A_ME LINE L1 -812 2046 2032 4 1098 198 71 0 0 chr12 67295227 67295255 -53962275 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 4 1098 303 239 14 0 chr12 67295255 67295310 -53962220 - HAL1-3A_ME LINE L1 -827 2031 1976 4 1098 426 263 195 13 chr12 67295451 67295605 -53961925 - B3A SINE B2 -16 182 1 4 1098 4434 65 1 0 chr12 67295980 67296698 -53960832 - L1_Mus1 LINE L1 -431 6136 5418 4 1098 244 269 15 0 chr12 67297059 67297126 -53960404 + L1MEf LINE L1 1394 1461 -4739 4 1098 288 309 28 49 chr12 67297127 67297270 -53960260 + MLT1A0 LTR MaLR 1 140 -225 4 1098 570 331 132 31 chr12 67297403 67297942 -53959588 - L2 LINE L2 -1277 2142 1550 4 1098 23 33 0 0 chr12 67298263 67298293 -53959237 + AT_rich Low_complexity Low_complexity 1 30 0 4 1098 459 348 37 26 chr12 67299220 67299239 -53958291 - B3A SINE B2 -2 196 180 4 1098 474 18 0 0 chr12 67299239 67299294 -53958236 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1098 459 348 37 26 chr12 67299294 67299463 -53958067 - B3A SINE B2 -19 179 6 4 1098 27 29 0 0 chr12 67299939 67299973 -53957557 + AT_rich Low_complexity Low_complexity 1 34 0 4 1098 539 304 113 10 chr12 67300114 67300317 -53957213 - Lx9 LINE L1 -349 7295 7072 4 1098 975 217 64 39 chr12 67300343 67300654 -53956876 + Lx9 LINE L1 7324 7642 -2 4 1098 198 0 0 0 chr12 67300675 67300697 -53956833 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1098 2749 60 50 19 chr12 67301231 67301607 -53955923 - RLTR10 LTR ERVK -2 388 1 4 1098 8016 34 30 2 chr12 67301607 67302575 -53954955 - RLTR10-int LTR ERVK -1 1986 992 4 1098 4202 55 1 1 chr12 67303106 67303985 -53953545 - RLTR10-int LTR ERVK -995 992 41 4 1098 2926 62 10 15 chr12 67303997 67304387 -53953143 - RLTR10 LTR ERVK -2 388 1 4 1098 317 262 451 45 chr12 67304387 67304651 -53952879 + MLT1B LTR MaLR 38 408 0 4 1098 305 290 111 105 chr12 67304783 67304945 -53952585 - RSINE1 SINE B4 0 165 3 4 1098 248 130 0 36 chr12 67305769 67305825 -53951705 + CT-rich Low_complexity Low_complexity 2 55 0 4 1098 317 351 86 42 chr12 67305853 67306137 -53951393 + B4 SINE B4 7 274 -18 4 1098 217 228 18 0 chr12 67306162 67306219 -53951311 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1098 603 246 60 108 chr12 67306648 67306670 -53950860 - RMER17C LTR ERVK -13 397 381 4 1098 799 88 24 0 chr12 67306670 67306795 -53950735 + (GGAA)n Simple_repeat Simple_repeat 4 131 0 4 1098 911 235 35 55 chr12 67306795 67307256 -53950274 - RMER17C LTR ERVK -330 479 1 4 1098 22 70 0 0 chr12 67307491 67307534 -53949996 + AT_rich Low_complexity Low_complexity 1 43 0 4 1098 562 289 7 98 chr12 67307730 67307947 -53949583 + B3A SINE B2 16 216 0 4 1098 9843 92 15 3 chr12 67308243 67310355 -53947175 + L1Md_F LINE L1 403 2541 -3342 4 1098 521 318 11 4 chr12 67310382 67310650 -53946880 - L1M2 LINE L1 -2949 3194 2925 4 1098 675 251 170 45 chr12 67310655 67310985 -53946545 - RLTR45 LTR ERVK 0 482 112 4 1098 247 281 37 25 chr12 67311269 67311438 -53946092 - L1MEe LINE L1 -4580 1504 1342 4 1098 261 83 0 0 chr12 67311845 67311881 -53945649 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 4 1098 261 288 0 0 chr12 67311884 67311957 -53945573 + CT-rich Low_complexity Low_complexity 3 75 0 4 1098 8168 57 2 0 chr12 67311986 67313592 -53943938 - L1Md_F2 LINE L1 -2 6580 4971 4 1098 1363 76 11 0 chr12 67313972 67314157 -53943373 - B2_Mm1t SINE B2 -5 188 2 4 1098 21 0 0 0 chr12 67314228 67314249 -53943281 + AT_rich Low_complexity Low_complexity 1 21 0 4 1098 219 88 0 0 chr12 67314295 67314329 -53943201 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1098 5553 131 20 0 chr12 67314330 67315184 -53942346 - Lx2 LINE L1 0 6997 6127 4 1098 2818 9 3 0 chr12 67315183 67315505 -53942025 - L1Md_A LINE L1 0 6582 6260 4 1098 615 40 0 0 chr12 67315505 67315580 -53941950 + B2_Mm1t SINE B2 14 88 -105 4 1098 940 180 17 0 chr12 67317075 67317092 -53940438 - B2_Mm1t SINE B2 -11 182 166 4 1098 216 0 0 0 chr12 67317092 67317116 -53940414 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 1098 1067 111 7 0 chr12 67317116 67317276 -53940254 - B2_Mm2 SINE B2 -28 165 2 4 1098 904 250 89 58 chr12 67317624 67317917 -53939613 - MTD LTR MaLR -37 382 81 4 1098 1046 111 66 6 chr12 67317942 67318123 -53939407 - L1_Mus4 LINE L1 0 6636 6445 4 1098 376 304 186 8 chr12 67318690 67318942 -53938588 + L2 LINE L2 2389 2685 -734 4 1098 408 338 28 0 chr12 67319022 67319167 -53938363 - B1F SINE Alu 0 149 1 4 1098 26 74 0 0 chr12 67319310 67319364 -53938166 + AT_rich Low_complexity Low_complexity 1 54 0 4 1098 565 74 83 0 chr12 67319566 67319674 -53937856 + L1_Mus3 LINE L1 6515 6631 -7 4 1098 310 250 29 0 chr12 67319751 67319819 -53937711 - ID4_ SINE ID -13 70 1 4 1098 1076 101 0 26 chr12 67321312 67321464 -53936066 - B1_Mus1 SINE Alu 0 148 1 4 1098 212 354 10 50 chr12 67321589 67321690 -53935840 - B1_Mm SINE Alu -48 99 3 4 1098 573 303 13 6 chr12 67321690 67321770 -53935760 - ID SINE ID -141 83 3 4 1098 509 315 127 26 chr12 67321892 67322081 -53935449 - B4 SINE B4 -3 289 82 4 1098 4136 64 0 0 chr12 67322116 67322633 -53934897 - L1_Mus1 LINE L1 0 6567 6051 4 1098 2707 59 0 51 chr12 67322633 67322768 -53934762 + L1_Mus1 LINE L1 5664 5797 -770 4 1098 1109 58 0 0 chr12 67322768 67322906 -53934624 + B1_Mm SINE Alu 1 138 -9 4 1098 180 0 0 0 chr12 67322906 67322926 -53934604 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 4 1098 2707 59 0 51 chr12 67322926 67323163 -53934367 + L1_Mus1 LINE L1 5798 6017 -550 4 1098 1733 315 79 36 chr12 67323365 67323486 -53934044 - Lx8 LINE L1 -33 7440 7333 5 1098 324 0 0 0 chr12 67323486 67323522 -53934008 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1098 1733 315 79 36 chr12 67323522 67324276 -53933254 - Lx8 LINE L1 -141 7332 6529 5 1098 540 0 0 0 chr12 67324355 67324415 -53933115 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1098 299 325 0 0 chr12 67324415 67324492 -53933038 - B4 SINE B4 -214 78 2 4 1098 2026 234 24 24 chr12 67325376 67325867 -53931663 - RMER5 LTR ERV1 -16 518 28 5 1098 216 103 26 0 chr12 67325912 67325951 -53931579 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1098 1112 89 42 53 chr12 67326064 67326254 -53931276 - B2_Mm2 SINE B2 -7 188 1 5 1098 823 291 87 19 chr12 67326335 67326657 -53930873 + MER67C LTR ERV1 62 405 -306 5 1098 293 355 72 63 chr12 67327014 67327262 -53930268 - L2 LINE L2 -473 2946 2698 5 1098 456 35 0 0 chr12 67327262 67327320 -53930210 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 5 1098 293 355 72 63 chr12 67327320 67327420 -53930110 - L2 LINE L2 -722 2697 2596 5 1098 1201 289 61 71 chr12 67327441 67328015 -53929515 + Lx8 LINE L1 6906 7473 0 5 1098 1133 116 6 0 chr12 67328265 67328429 -53929101 + B2_Mm1t SINE B2 1 165 -28 5 1098 328 120 324 36 chr12 67328500 67328611 -53928919 + B2_Mm2 SINE B2 47 189 -6 5 1098 1939 124 35 13 chr12 67328765 67329083 -53928447 + Lx LINE L1 6329 6653 -1 5 1098 654 257 7 0 chr12 67329188 67329324 -53928206 + B1_Mur2 SINE Alu 6 142 -7 5 1098 584 106 11 0 chr12 67330567 67330661 -53926869 + (TC)n Simple_repeat Simple_repeat 2 96 0 5 1098 249 197 213 41 chr12 67330700 67330822 -53926708 + L1M2 LINE L1 5752 5894 -406 5 1098 312 91 0 0 chr12 67332451 67332495 -53925035 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1098 344 305 18 62 chr12 67332779 67332891 -53924639 + MIR SINE MIR 22 128 -134 5 1098 22 56 0 0 chr12 67333388 67333424 -53924106 + AT_rich Low_complexity Low_complexity 1 36 0 5 1098 21 36 0 0 chr12 67333734 67333762 -53923768 + AT_rich Low_complexity Low_complexity 1 28 0 5 1098 1715 304 68 19 chr12 67334475 67335363 -53922167 - L1_Mur3 LINE L1 -15 5865 4935 5 1098 314 186 33 17 chr12 67335378 67335498 -53922032 + CT-rich Low_complexity Low_complexity 3 124 0 5 1098 3452 281 35 47 chr12 67336003 67336613 -53920917 + Lx8 LINE L1 6217 6804 -669 5 1098 5446 35 0 3 chr12 67336613 67337262 -53920268 + L1Md_F3 LINE L1 5935 6581 -3 5 1098 3452 281 35 47 chr12 67337262 67337923 -53919607 + Lx8 LINE L1 6805 7472 -1 5 1098 183 42 0 0 chr12 67338847 67338871 -53918659 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5 1098 259 225 125 33 chr12 67340119 67340303 -53917227 - L1M3 LINE L1 -979 5161 4961 5 1098 351 273 122 42 chr12 67340425 67340771 -53916759 + L1MA7 LINE L1 5396 5787 -516 5 1098 240 353 77 15 chr12 67340825 67341263 -53916267 + L1MA7 LINE L1 5799 6255 -57 5 1098 285 175 0 0 chr12 67341899 67341914 -53915616 + polypurine Low_complexity Low_complexity 2 16 0 5 1098 1322 28 11 17 chr12 67341914 67342095 -53915435 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1098 285 175 0 0 chr12 67342095 67342136 -53915394 + polypurine Low_complexity Low_complexity 17 57 0 5 1098 685 215 27 19 chr12 67342826 67342992 -53914538 - B2_Mm2 SINE B2 -7 186 4 5 1098 453 269 151 34 chr12 67343165 67343311 -53914219 + RSINE1 SINE B4 1 163 -2 5 1098 306 50 0 0 chr12 67343315 67343355 -53914175 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 5 1098 209 170 19 19 chr12 67343355 67343373 -53914157 + (TAAA)n Simple_repeat Simple_repeat 3 20 0 5 1098 1360 90 11 0 chr12 67343373 67343561 -53913969 + B2_Mm1t SINE B2 1 190 -3 5 1098 209 170 19 19 chr12 67343561 67343596 -53913934 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 5 1098 40 0 0 0 chr12 67344060 67344100 -53913430 + AT_rich Low_complexity Low_complexity 1 40 0 5 1098 1176 82 0 0 chr12 67344503 67344650 -53912880 + B1_Mus1 SINE Alu 2 148 0 5 1098 1437 60 16 0 chr12 67345199 67345382 -53912148 - B2_Mm2 SINE B2 -8 187 2 5 1098 30 27 0 0 chr12 67345668 67345705 -53911825 + AT_rich Low_complexity Low_complexity 1 37 0 5 1098 212 219 36 24 chr12 67345773 67345857 -53911673 + (TATAA)n Simple_repeat Simple_repeat 2 86 0 5 1098 27 29 0 0 chr12 67347199 67347233 -53910297 + AT_rich Low_complexity Low_complexity 1 34 0 5 1098 268 233 27 64 chr12 67347233 67347343 -53910187 - Lx3C LINE L1 -61 6915 6810 5 1098 387 0 0 0 chr12 67347532 67347575 -53909955 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1098 243 0 0 0 chr12 67347575 67347602 -53909928 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1098 9400 152 37 122 chr12 67347662 67349748 -53907782 + ORR1A4-int LTR MaLR 54 1963 0 5 1098 1903 174 0 6 chr12 67349748 67350077 -53907453 + ORR1A4 LTR MaLR 1 327 -2 5 1098 345 47 0 0 chr12 67350078 67350121 -53907409 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1098 338 347 50 33 chr12 67350165 67350347 -53907183 + B3A SINE B2 2 186 -12 5 1098 1030 234 15 0 chr12 67350374 67350575 -53906955 + B3 SINE B2 1 204 -12 5 1098 405 0 0 0 chr12 67350840 67350885 -53906645 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1098 469 229 38 9 chr12 67351496 67351602 -53905928 - PB1D10 SINE Alu -8 109 1 5 1098 213 296 19 0 chr12 67351879 67351933 -53905597 + MIR SINE MIR 31 85 -123 5 1098 2146 67 0 3 chr12 67352271 67352554 -53904976 - L1Md_F2 LINE L1 -3 6579 6298 5 1098 318 45 0 0 chr12 67352554 67352598 -53904932 + L1Md_F2 LINE L1 6285 6328 -254 5 1098 568 282 0 21 chr12 67352609 67352754 -53904776 + B1_Mur1 SINE Alu 1 142 -7 5 1098 1219 75 69 0 chr12 67353217 67353371 -53904159 + B2_Mm2 SINE B2 2 156 -39 5 1098 387 0 0 0 chr12 67353371 67353414 -53904116 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1098 1219 75 69 0 chr12 67353414 67353432 -53904098 + B2_Mm2 SINE B2 157 185 -10 5 1098 375 289 44 15 chr12 67353589 67353726 -53903804 - MLT1D LTR MaLR -55 450 310 5 1098 188 410 24 24 chr12 67353997 67354162 -53903368 + L2a LINE L2 2819 2983 -436 5 1098 200 265 116 35 chr12 67354222 67354308 -53903222 + L2a LINE L2 3071 3163 -263 5 1098 882 317 126 9 chr12 67354634 67355054 -53902476 + Tigger7 DNA MER2_type 3 471 -2020 5 1098 235 206 204 0 chr12 67355048 67355140 -53902390 + Tigger7 DNA MER2_type 2243 2357 -134 5 1098 36340 42 1 3 chr12 67355157 67361398 -53896132 - L1Md_T LINE L1 0 6585 262 5 1098 286 320 163 31 chr12 67361399 67361450 -53896080 + Tigger7 DNA MER2_type 2346 2417 -74 5 1098 383 0 21 0 chr12 67361450 67361497 -53896033 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1098 286 320 163 31 chr12 67361497 67361574 -53895956 + Tigger7 DNA MER2_type 2418 2491 0 5 1098 1289 86 11 0 chr12 67362424 67362599 -53894931 + B2_Mm1t SINE B2 3 179 -14 5 1098 356 98 366 10 chr12 67362613 67362714 -53894816 + B2_Mm2 SINE B2 50 186 -9 5 1098 633 310 85 7 chr12 67362870 67363175 -53894355 + LTR37A LTR ERV1 6 334 -92 5 1098 399 41 0 0 chr12 67363293 67363342 -53894188 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1098 223 272 10 89 chr12 67363497 67363598 -53893932 - MIR SINE MIR -106 156 64 5 1098 2507 157 9 30 chr12 67363616 67364057 -53893473 - Lx2B LINE L1 -4 6996 6565 5 1098 1092 262 38 137 chr12 67364057 67364482 -53893048 + MTD LTR MaLR 22 404 -15 5 1098 243 298 104 8 chr12 67364568 67364693 -53892837 - LTR33C LTR ERVL -19 610 474 5 1098 234 380 155 58 chr12 67364735 67365149 -53892381 - MLT2F LTR ERVL -121 542 89 5 1098 359 310 89 44 chr12 67365273 67365408 -53892122 + RSINE1 SINE B4 3 143 -22 5 1098 7876 122 40 12 chr12 67365429 67366744 -53890786 - Lx2 LINE L1 0 6997 5646 5 1098 420 128 0 0 chr12 67366761 67366839 -53890691 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1098 43 47 0 0 chr12 67366846 67366910 -53890620 + AT_rich Low_complexity Low_complexity 1 64 0 5 1098 409 287 0 11 chr12 67366915 67367010 -53890520 + ID_B1 SINE B4 79 172 -52 5 1098 388 262 0 12 chr12 67366934 67367019 -53890511 + PB1D10 SINE Alu 17 100 -17 5 1098 2035 147 36 22 chr12 67368072 67368434 -53889096 - ORR1B2 LTR MaLR 0 367 1 5 1098 214 146 0 47 chr12 67368579 67368622 -53888908 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 5 1098 28 48 0 0 chr12 67368914 67368956 -53888574 + AT_rich Low_complexity Low_complexity 1 42 0 5 1098 30 0 0 0 chr12 67369660 67369690 -53887840 + AT_rich Low_complexity Low_complexity 1 30 0 5 1098 203 22 106 21 chr12 67369913 67369960 -53887570 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 5 1099 958 81 73 0 chr12 67371671 67371807 -53885723 - B1_Mus1 SINE Alu -1 147 2 5 1099 503 171 0 0 chr12 67371940 67372051 -53885479 - ORR1A1 LTR MaLR -235 111 1 5 1099 3095 68 5 2 chr12 67372164 67372563 -53884967 + MTB LTR MaLR 1 400 0 5 1099 3049 198 89 30 chr12 67373116 67373947 -53883583 + L1_Mur3 LINE L1 536 1418 -4462 5 1099 891 131 7 52 chr12 67373951 67374104 -53883426 - RMER16 LTR ERVK 0 533 388 5 1099 516 179 16 74 chr12 67374105 67374226 -53883304 - RMER16 LTR ERVK -419 114 1 5 1099 847 153 12 6 chr12 67374231 67374395 -53883135 + GA-rich Low_complexity Low_complexity 1 165 0 5 1099 522 126 43 0 chr12 67374396 67374510 -53883020 + L1_Mur3 LINE L1 1437 1548 -4332 5 1099 1241 98 35 0 chr12 67374511 67374684 -53882846 + B2_Mm1t SINE B2 1 179 -14 5 1099 427 134 32 4 chr12 67374689 67374795 -53882735 + B2_Mm2 SINE B2 1 114 -102 5 1099 5797 192 54 41 chr12 67374828 67375518 -53882012 + L1_Mur3 LINE L1 1544 2262 -3618 5 1099 288 0 0 0 chr12 67375518 67375550 -53881980 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1099 5797 192 54 41 chr12 67375550 67376138 -53881392 + L1_Mur3 LINE L1 2263 2858 -3022 5 1099 4362 14 2 12 chr12 67376138 67376636 -53880894 + MT2_Mm LTR ERVL 1 493 0 5 1099 5797 192 54 41 chr12 67376636 67376904 -53880626 + L1_Mur3 LINE L1 2859 3110 -2770 5 1099 665 62 113 0 chr12 67376912 67377009 -53880521 + RLTR47_MM LTR ERV1 167 274 -258 5 1099 1059 242 80 41 chr12 67377030 67377335 -53880195 + Lx7 LINE L1 7092 7410 -286 5 1099 186 43 0 0 chr12 67377335 67377358 -53880172 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1099 1059 242 80 41 chr12 67377358 67377492 -53880038 + Lx7 LINE L1 7411 7547 -149 5 1099 5079 179 19 92 chr12 67377533 67378372 -53879158 - RLTR25A LTR ERVK -3 1100 331 5 1099 1214 54 0 0 chr12 67378372 67378520 -53879010 - B1_Mus1 SINE Alu 0 148 1 5 1099 5079 179 19 92 chr12 67378520 67378866 -53878664 - RLTR25A LTR ERVK -773 330 1 5 1099 267 209 97 41 chr12 67380153 67380298 -53877232 - Lx8 LINE L1 -17 7456 7304 5 1099 2365 46 0 0 chr12 67380296 67380598 -53876932 + L1Md_F2 LINE L1 6210 6511 -71 5 1099 2684 174 83 26 chr12 67380583 67381208 -53876322 + Lx3C LINE L1 6312 6972 -4 5 1099 336 319 92 46 chr12 67381373 67381477 -53876053 - B4A SINE B4 -100 192 79 6 1099 4151 43 4 6 chr12 67381477 67381987 -53875543 - L1Md_T LINE L1 0 6582 6074 6 1099 336 319 92 46 chr12 67381987 67382056 -53875474 - B4A SINE B4 -214 78 11 6 1099 436 295 93 0 chr12 67382075 67382214 -53875316 - B4 SINE B4 -83 209 58 6 1099 23 33 0 0 chr12 67382304 67382334 -53875196 + AT_rich Low_complexity Low_complexity 1 30 0 6 1099 305 272 85 28 chr12 67382354 67382460 -53875070 - RSINE1 SINE B4 -36 129 18 6 1099 739 239 72 52 chr12 67382501 67382695 -53874835 + B3 SINE B2 19 216 0 6 1099 579 12 12 12 chr12 67382774 67382859 -53874671 - L1Md_F2 LINE L1 -8 6574 6490 6 1099 1311 154 186 12 chr12 67382859 67383269 -53874261 - Lx3C LINE L1 -684 6292 5811 6 1099 1128 82 0 0 chr12 67385618 67385765 -53871765 + B1_Mus1 SINE Alu 1 147 -1 6 1099 919 128 29 16 chr12 67386930 67387089 -53870441 - B1_Mus1 SINE Alu 0 311 8 6 1099 212 182 0 0 chr12 67387156 67387189 -53870341 + B4A SINE B4 8 40 -252 6 1099 1131 83 0 0 chr12 67387536 67387681 -53869849 - B1_Mus1 SINE Alu -1 147 3 6 1099 243 0 0 0 chr12 67387801 67387828 -53869702 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1099 724 60 7 194 chr12 67387833 67387977 -53869553 - B1_Mus1 SINE Alu 0 148 32 6 1099 257 194 104 0 chr12 67387924 67387991 -53869539 - MT2B LTR ERVL -361 240 167 6 1099 2970 43 52 0 chr12 67387994 67388363 -53869167 - RLTR10 LTR ERVK -2 388 1 6 1099 27 49 0 0 chr12 67388445 67388486 -53869044 + AT_rich Low_complexity Low_complexity 1 41 0 6 1099 384 167 15 29 chr12 67388487 67388549 -53868981 + MT2B LTR ERVL 1 62 -539 6 1099 192 77 0 0 chr12 67388549 67388575 -53868955 + (TA)n Simple_repeat Simple_repeat 1 26 0 6 1099 225 0 0 0 chr12 67389175 67389200 -53868330 + (TATG)n Simple_repeat Simple_repeat 2 26 0 6 1099 554 275 19 48 chr12 67389896 67390230 -53867300 + RMER17C LTR ERVK 1 376 -34 6 1099 401 209 101 61 chr12 67390458 67390606 -53866924 - RLTR42-int LTR ERVK -4177 1345 1192 6 1099 1009 58 62 35 chr12 67390896 67391040 -53866490 + B1_Mus1 SINE Alu 1 148 0 6 1099 360 111 0 0 chr12 67391043 67391106 -53866424 + (A)n Simple_repeat Simple_repeat 1 63 0 6 1099 759 22 0 0 chr12 67391819 67391908 -53865622 + (TTCCC)n Simple_repeat Simple_repeat 3 91 0 6 1099 589 248 91 114 chr12 67392223 67392487 -53865043 + B4A SINE B4 35 292 0 6 1099 287 284 27 0 chr12 67392507 67392581 -53864949 + B4A SINE B4 211 286 -6 6 1099 1098 143 143 0 chr12 67392850 67393046 -53864484 - URR1A DNA MER1_type -2 224 1 6 1099 868 166 53 63 chr12 67393553 67393759 -53863771 - RMER10B LTR ERVL 0 398 195 6 1099 1065 206 24 28 chr12 67393732 67393782 -53863748 - RMER10B LTR ERVL -147 251 199 6 1099 200 31 0 59 chr12 67393782 67393816 -53863714 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 6 1099 1065 206 24 28 chr12 67393816 67394015 -53863515 - RMER10B LTR ERVL -200 198 4 6 1099 317 82 0 20 chr12 67394017 67394067 -53863463 + (TAA)n Simple_repeat Simple_repeat 3 51 0 6 1099 327 285 98 66 chr12 67394629 67394915 -53862615 - Arthur1 DNA Tip100 -631 3316 3022 6 1099 1914 218 90 77 chr12 67395293 67396033 -53861497 - RMER17B LTR ERVK -182 776 41 6 1099 3270 87 6 11 chr12 67396409 67396875 -53860655 + RMER16 LTR ERVK 70 533 0 6 1099 1475 324 85 96 chr12 67397082 67398154 -53859376 - MLT1F-int LTR MaLR -375 1114 6 6 1099 395 164 7 101 chr12 67398559 67398708 -53858822 - Lx4B LINE L1 -4 7054 6920 6 1099 6249 147 45 9 chr12 67398709 67400328 -53857202 - Lx4B LINE L1 -280 6778 5084 6 1099 2121 114 6 71 chr12 67400332 67400682 -53856848 + ORR1A2 LTR MaLR 1 327 0 6 1099 5144 130 9 32 chr12 67400683 67401633 -53855897 + L1_Mur2 LINE L1 4166 5094 -783 6 1099 241 348 95 16 chr12 67401863 67402053 -53855477 + L1M4 LINE L1 455 659 -5883 6 1099 749 321 27 72 chr12 67402341 67402633 -53854897 + B4A SINE B4 4 282 -10 6 1099 324 279 98 20 chr12 67402721 67402966 -53854564 + L1M4 LINE L1 1033 1296 -5246 6 1099 300 127 32 0 chr12 67403089 67403152 -53854378 + L1M4 LINE L1 1443 1507 -5233 6 1099 21 0 0 0 chr12 67403413 67403434 -53854096 + AT_rich Low_complexity Low_complexity 1 21 0 6 1099 313 276 241 19 chr12 67403650 67404082 -53853448 + L1M4 LINE L1 3645 4172 -1974 6 1099 264 266 16 0 chr12 67404099 67404163 -53853367 + tRNA-Ala-GCG tRNA tRNA 2 66 -9 6 1099 244 241 111 0 chr12 67404167 67404275 -53853255 + L1M4 LINE L1 4158 4277 -1869 6 1099 335 325 105 30 chr12 67404460 67404660 -53852870 + L1M4 LINE L1 4485 4699 -1447 6 1099 228 238 0 0 chr12 67404824 67404887 -53852643 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 6 1099 342 0 0 0 chr12 67405067 67405105 -53852425 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1099 898 59 0 0 chr12 67405487 67405606 -53851924 - B1_Mus1 SINE Alu 0 148 30 6 1099 384 224 139 79 chr12 67405787 67405798 -53851732 - B2_Mm2 SINE B2 -18 177 168 6 1099 329 75 0 19 chr12 67405798 67405852 -53851678 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1099 560 224 139 79 chr12 67405852 67406005 -53851525 - B3A SINE B2 -28 167 3 6 1099 284 308 136 27 chr12 67407261 67407371 -53850159 + RSINE1 SINE B4 10 131 -34 6 1099 419 0 0 19 chr12 67407395 67407447 -53850083 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1099 22 0 0 0 chr12 67407701 67407723 -53849807 + AT_rich Low_complexity Low_complexity 1 22 0 6 1099 21 0 0 0 chr12 67408513 67408534 -53848996 + AT_rich Low_complexity Low_complexity 1 21 0 6 1099 1461 44 16 6 chr12 67408558 67408741 -53848789 - B2_Mm2 SINE B2 -9 186 2 6 1099 394 169 0 0 chr12 67409043 67409108 -53848422 + Lx6 LINE L1 5728 5792 -88 6 1099 1361 58 0 6 chr12 67409108 67409281 -53848249 + B2_Mm2 SINE B2 2 173 -22 6 1099 1242 267 68 19 chr12 67409282 67410030 -53847500 + Lx6 LINE L1 5837 6858 -602 6 1099 575 237 36 0 chr12 67411332 67411471 -53846059 + B1_Mus2 SINE Alu 4 147 0 6 1099 13743 68 3 2 chr12 67412397 67414976 -53842554 - L1Md_F2 LINE L1 -15 6567 3986 6 1099 360 0 0 0 chr12 67416080 67416120 -53841410 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1099 1955 100 0 27 chr12 67416512 67416810 -53840720 - Lx2 LINE L1 -1 6996 6707 6 1099 1385 24 0 0 chr12 67417005 67417172 -53840358 + L1Md_T LINE L1 5420 5586 -297 6 1099 8069 53 0 0 chr12 67417172 67418168 -53839362 + L1Md_T LINE L1 5587 6582 0 6 1099 1574 217 79 47 chr12 67418282 67418789 -53838741 - RLTR20B3 LTR ERVK -34 543 21 6 1099 180 0 0 0 chr12 67419066 67419086 -53838444 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1099 194 176 20 0 chr12 67419214 67419265 -53838265 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1099 470 275 42 0 chr12 67419411 67419531 -53837999 + RSINE1 SINE B4 4 128 -37 6 1099 26 30 0 0 chr12 67420416 67420449 -53837081 + AT_rich Low_complexity Low_complexity 1 33 0 6 1099 27 0 0 0 chr12 67420496 67420523 -53837007 + AT_rich Low_complexity Low_complexity 1 27 0 6 1099 612 310 5 5 chr12 67421263 67421464 -53836066 + B3 SINE B2 3 203 -13 6 1099 331 354 25 75 chr12 67421580 67421739 -53835791 - ORR1E LTR MaLR -167 192 42 6 1099 1087 198 36 9 chr12 67421880 67422099 -53835431 - URR1A DNA MER1_type 0 226 2 6 1099 5225 106 28 16 chr12 67424094 67424594 -53832936 + RLTR22_Mur LTR ERVK 1 494 -1354 6 1099 2096 89 25 22 chr12 67424594 67424917 -53832613 + L1_Mus3 LINE L1 6308 6631 -7 6 1099 5225 106 28 16 chr12 67424917 67425241 -53832289 + RLTR22_Mur LTR ERVK 495 834 -1014 6 1099 364 172 77 49 chr12 67427860 67427979 -53829551 + LTRIS5 LTR ERV1 1 74 -373 6 1099 1100 173 22 26 chr12 67427970 67428202 -53829328 + LTRIS5 LTR ERV1 217 447 0 6 1099 183 328 0 0 chr12 67428221 67428282 -53829248 + MIRm SINE MIR 216 276 0 6 1099 3491 154 52 35 chr12 67428579 67429210 -53828320 + RLTR26 LTR ERVK 1 642 0 6 1099 371 319 108 45 chr12 67429217 67429552 -53827978 + Lx8 LINE L1 7113 7468 -5 6 1099 22 35 0 0 chr12 67429557 67429586 -53827944 + AT_rich Low_complexity Low_complexity 1 29 0 6 1099 4028 123 17 72 chr12 67429697 67430476 -53827054 - RMER17A LTR ERVK -15 736 1 6 1099 377 153 14 0 chr12 67430547 67430619 -53826911 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1099 345 47 0 0 chr12 67430619 67430662 -53826868 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1099 5188 110 16 0 chr12 67431292 67432035 -53825495 - Lx2 LINE L1 -2 6995 6241 6 1099 379 185 0 18 chr12 67432040 67432150 -53825380 - Lx2 LINE L1 -884 6113 6006 6 1099 23 33 0 0 chr12 67432223 67432253 -53825277 + AT_rich Low_complexity Low_complexity 1 30 0 6 1099 2748 155 84 84 chr12 67433359 67434049 -53823481 + RMER6C LTR ERVK 1 690 0 6 1099 315 318 106 38 chr12 67434269 67434429 -53823101 + MTE2b LTR MaLR 77 247 -112 6 1099 186 43 0 0 chr12 67434971 67434994 -53822536 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1099 182 304 41 89 chr12 67436892 67437015 -53820515 - L3 LINE CR1 -242 4247 4131 6 1099 8458 142 29 2 chr12 67437737 67439233 -53818297 - Lx4A LINE L1 -3 7055 5510 6 1099 2622 117 0 0 chr12 67439234 67439629 -53817901 + L1_Mur2 LINE L1 4862 5256 -621 6 1099 662 257 24 12 chr12 67439659 67439828 -53817702 + MTE2b LTR MaLR 209 379 0 6 1099 958 283 62 124 chr12 67440287 67440851 -53816679 + RLTR18 LTR ERVK 1 529 -87 6 1099 801 371 39 28 chr12 67441427 67441785 -53815745 - MLT2B3 LTR ERVL 0 554 193 6 1099 315 0 0 0 chr12 67441813 67441848 -53815682 + (TTA)n Simple_repeat Simple_repeat 2 36 0 6 1099 585 221 16 0 chr12 67442004 67442131 -53815399 - MLT2B3 LTR ERVL -383 132 4 6 1099 183 184 0 0 chr12 67442355 67442393 -53815137 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1099 1495 72 19 0 chr12 67442646 67442853 -53814677 - MTA_Mm LTR MaLR 0 396 186 6 1099 3136 46 34 2 chr12 67442831 67443244 -53814286 - ORR1A1-int LTR MaLR -1366 426 1 6 1099 2617 39 21 3 chr12 67443248 67443580 -53813950 - ORR1A1 LTR MaLR -8 338 1 6 1099 1284 258 36 16 chr12 67443714 67444077 -53813453 + ORR1D2 LTR MaLR 1 370 0 6 1099 189 0 0 0 chr12 67444468 67444489 -53813041 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1099 672 350 31 22 chr12 67444678 67445002 -53812528 + MLT1A0 LTR MaLR 35 361 -4 6 1099 620 64 11 0 chr12 67446107 67446201 -53811329 + (CA)n Simple_repeat Simple_repeat 1 95 0 6 1099 276 149 0 0 chr12 67446204 67446251 -53811279 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1099 1429 211 120 3 chr12 67447297 67447672 -53809858 - MTD LTR MaLR 0 419 1 6 1099 478 334 15 11 chr12 67448306 67448471 -53809059 + B4 SINE B4 1 162 -62 6 1099 1172 225 18 66 chr12 67448649 67448935 -53808595 - Lx5 LINE L1 -3 7047 6776 7 1099 1515 201 22 3 chr12 67448935 67449249 -53808281 + ORR1A1 LTR MaLR 1 320 -26 7 1099 1479 264 107 171 chr12 67449282 67449739 -53807791 - RMER12 LTR ERVK -28 1294 946 7 1099 198 0 0 0 chr12 67449739 67449761 -53807769 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1099 1479 264 107 171 chr12 67449761 67450686 -53806844 - RMER12 LTR ERVK -377 945 1 7 1099 28 0 0 0 chr12 67450992 67451020 -53806510 + AT_rich Low_complexity Low_complexity 1 28 0 7 1099 661 178 250 6 chr12 67451032 67451196 -53806334 - B3 SINE B2 -10 206 3 7 1099 230 351 108 44 chr12 67451361 67451519 -53806011 - B3 SINE B2 -12 204 37 7 1099 540 0 0 0 chr12 67451531 67451591 -53805939 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 7 1099 820 164 90 6 chr12 67451601 67451779 -53805751 - B2_Mm2 SINE B2 -1 194 2 7 1099 2731 60 3 0 chr12 67451909 67452259 -53805271 + L1Md_F2 LINE L1 6230 6580 -2 7 1099 370 320 127 39 chr12 67452298 67452503 -53805027 - MER58A DNA MER1_type 0 224 2 7 1099 316 348 138 28 chr12 67453330 67453620 -53803910 - L1MEc LINE L1 -5920 480 159 7 1099 649 174 16 167 chr12 67453818 67453941 -53803589 - URR1B DNA MER1_type 0 225 116 7 1099 2226 61 0 0 chr12 67453941 67454218 -53803312 - L1_Mus1 LINE L1 -2 6565 6289 7 1099 649 174 16 167 chr12 67454218 67454280 -53803250 - URR1B DNA MER1_type -110 115 68 7 1099 313 23 0 0 chr12 67454295 67454339 -53803191 - L1_Mus2 LINE L1 -1 6565 6522 7 1099 398 264 0 0 chr12 67454339 67454426 -53803104 - URR1B DNA MER1_type -138 87 1 7 1099 588 301 36 0 chr12 67454711 67454904 -53802626 - MER2 DNA MER2_type -53 292 93 7 1099 669 75 36 2 chr12 67455584 67455690 -53801840 - B1_Mus1 SINE Alu -37 112 2 7 1099 375 213 16 107 chr12 67455690 67455717 -53801813 - MT2B LTR ERVL -443 158 143 7 1099 244 314 14 41 chr12 67455763 67455836 -53801694 + ID4_ SINE ID 2 72 -11 7 1099 231 103 0 0 chr12 67455870 67455909 -53801621 + (CCA)n Simple_repeat Simple_repeat 3 41 0 7 1099 268 355 82 73 chr12 67456180 67456605 -53800925 + MLT1J-int LTR MaLR 193 621 -766 7 1099 189 107 0 0 chr12 67456998 67457026 -53800504 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1099 381 144 33 11 chr12 67457028 67457119 -53800411 - L1_Mus3 LINE L1 -4 6634 6542 7 1099 200 326 0 89 chr12 67457600 67457701 -53799829 + L3b LINE CR1 113 204 -278 7 1099 333 0 0 0 chr12 67458146 67458183 -53799347 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1099 4600 118 37 4 chr12 67459298 67460658 -53796872 + L1Md_F2 LINE L1 389 1795 -4088 7 1099 14812 73 26 0 chr12 67460656 67462659 -53794871 + L1Md_F2 LINE L1 3446 5500 -383 7 1099 4628 105 7 13 chr12 67462668 67462824 -53794706 + L1Md_F2 LINE L1 5880 6032 -550 7 1099 4140 21 4 4 chr12 67462824 67463306 -53794224 + LTRIS_Mm LTR ERV1 1 482 0 7 1099 4628 105 7 13 chr12 67463306 67463844 -53793686 + L1Md_F2 LINE L1 6033 6570 -12 7 1099 5081 124 139 24 chr12 67463977 67464902 -53792628 - L1_Mus4 LINE L1 -4 6632 5601 7 1099 9256 100 39 23 chr12 67465063 67467177 -53790353 - Lx3_Mus LINE L1 -5 7004 4847 7 1099 2507 82 6 12 chr12 67467177 67467523 -53790007 - ORR1A1 LTR MaLR -2 344 1 7 1099 11663 90 50 2 chr12 67467523 67469233 -53788297 - ORR1A1-int LTR MaLR 0 1792 1 7 1099 2700 59 18 0 chr12 67469233 67469573 -53787957 - ORR1A1 LTR MaLR 0 346 1 7 1099 7017 104 27 24 chr12 67469573 67469650 -53787880 - Lx3_Mus LINE L1 -1040 4846 4772 7 1099 265 278 184 25 chr12 67469662 67470054 -53787476 - L1M2 LINE L1 -3450 3395 2942 7 1099 1161 177 50 0 chr12 67470086 67470284 -53787246 - B3 SINE B2 0 216 9 7 1099 191 36 0 35 chr12 67470446 67470475 -53787055 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 7 1099 580 188 8 8 chr12 67470608 67470742 -53786788 + CT-rich Low_complexity Low_complexity 3 136 0 7 1099 414 16 15 31 chr12 67470751 67470816 -53786714 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 1099 1001 58 0 87 chr12 67470816 67470966 -53786564 - B1_Mm SINE Alu -10 137 1 7 1099 335 324 45 32 chr12 67471015 67471261 -53786269 - L1MEf LINE L1 -4673 1527 1279 7 1099 525 363 0 25 chr12 67471297 67471458 -53786072 - RSINE1 SINE B4 -7 158 2 7 1099 291 324 17 11 chr12 67471460 67471643 -53785887 - L1M2 LINE L1 -4182 2367 2155 7 1099 863 304 32 61 chr12 67471772 67472052 -53785478 - B4A SINE B4 0 292 21 7 1099 22 0 0 0 chr12 67472379 67472401 -53785129 + AT_rich Low_complexity Low_complexity 1 22 0 7 1099 264 30 0 0 chr12 67473071 67473104 -53784426 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1099 459 0 0 0 chr12 67473104 67473154 -53784376 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1099 1031 93 7 0 chr12 67473209 67473348 -53784182 + B1_Mus1 SINE Alu 1 140 -8 7 1099 1134 155 42 0 chr12 67473381 67473594 -53783936 - L1_Mur2 LINE L1 -964 4913 4692 7 1099 2034 218 58 0 chr12 67473600 67473995 -53783535 + Lx5 LINE L1 6630 7047 -3 7 1099 249 261 185 0 chr12 67475743 67475808 -53781722 + LTR88c LTR Genie? 29 105 -757 7 1099 405 0 0 0 chr12 67475833 67475878 -53781652 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 7 1099 2239 259 86 104 chr12 67475947 67476379 -53781151 + Lx6 LINE L1 6309 6754 -706 7 1099 188 35 35 0 chr12 67476379 67476408 -53781122 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 7 1099 2239 270 235 78 chr12 67476408 67477024 -53780506 + Lx6 LINE L1 6755 7445 -15 7 1099 25 0 0 0 chr12 67477025 67477050 -53780480 + AT_rich Low_complexity Low_complexity 1 25 0 7 1099 10239 89 28 15 chr12 67477215 67478009 -53779521 - L1_Mur1 LINE L1 -860 5026 4226 7 1099 4870 23 2 0 chr12 67478009 67478574 -53778956 + L1Md_F2 LINE L1 6017 6582 0 7 1099 10239 89 28 15 chr12 67478574 67479338 -53778192 - L1_Mur1 LINE L1 -1661 4225 3451 7 1099 1906 95 109 9 chr12 67479887 67480227 -53777303 - MusHAL1 LINE L1 -626 2086 1713 7 1099 345 260 25 46 chr12 67480282 67480464 -53777066 - L1_Mur1 LINE L1 -6151 831 672 7 1099 268 246 102 16 chr12 67480692 67480820 -53776710 - Tigger7 DNA MER2_type -78 2413 2275 7 1099 694 325 34 29 chr12 67480844 67481082 -53776448 + B4 SINE B4 28 266 -26 7 1099 258 57 0 0 chr12 67481082 67481117 -53776413 + L1Md_F2 LINE L1 6527 6561 -21 7 1099 423 0 0 0 chr12 67481122 67481169 -53776361 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1099 333 109 0 0 chr12 67481281 67481336 -53776194 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1099 450 0 0 0 chr12 67481336 67481385 -53776145 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1099 299 375 39 0 chr12 67481485 67481613 -53775917 - Tigger7 DNA MER2_type -2190 301 169 7 1099 293 277 92 85 chr12 67482075 67482205 -53775325 - Tigger7 DNA MER2_type -2337 154 24 7 1099 184 320 36 64 chr12 67482415 67482525 -53775005 - MER5B DNA MER1_type -70 108 2 7 1099 279 0 0 0 chr12 67483001 67483032 -53774498 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1099 356 280 92 18 chr12 67483723 67483832 -53773698 + MTD LTR MaLR 255 371 -48 7 1099 198 356 81 58 chr12 67484337 67484632 -53772898 - L2 LINE L2 -2260 1159 858 7 1099 24 53 0 0 chr12 67484660 67484698 -53772832 + AT_rich Low_complexity Low_complexity 1 38 0 7 1099 280 342 0 0 chr12 67484703 67484782 -53772748 + B3A SINE B2 1 79 -119 7 1099 369 43 0 0 chr12 67485153 67485200 -53772330 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1099 350 273 81 62 chr12 67485366 67485577 -53771953 - MLT1F1 LTR MaLR -32 537 323 7 1099 226 302 81 78 chr12 67485808 67486178 -53771352 - L1MEc LINE L1 -5235 1165 795 7 1099 2743 75 2 70 chr12 67486207 67486636 -53770894 - L1_Mus4 LINE L1 -6 6630 6231 7 1099 1402 284 71 36 chr12 67487194 67487326 -53770204 - MER67C LTR ERV1 -1 710 563 7 1099 520 274 33 52 chr12 67487326 67487538 -53769992 + B3 SINE B2 3 210 -6 7 1099 1402 284 71 36 chr12 67487538 67487993 -53769537 - MER67C LTR ERV1 -149 562 102 7 1099 197 306 76 67 chr12 67488092 67488197 -53769333 + MER5A DNA MER1_type 9 114 -75 7 1099 243 0 0 0 chr12 67488211 67488238 -53769292 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 7 1099 209 277 0 0 chr12 67489602 67489649 -53767881 + CT-rich Low_complexity Low_complexity 3 49 0 7 1099 1362 270 71 29 chr12 67490791 67491439 -53766091 + Lx7 LINE L1 5386 6063 -1633 7 1099 2638 65 53 21 chr12 67491439 67491815 -53765715 + RLTR10 LTR ERVK 1 388 -2 7 1099 1098 296 58 41 chr12 67491815 67491932 -53765598 + Lx7 LINE L1 6064 6181 -1515 7 1099 4132 115 39 0 chr12 67491932 67492435 -53765095 + Lx2 LINE L1 6357 6882 -115 7 1099 180 0 0 0 chr12 67492435 67492455 -53765075 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 7 1099 4132 115 39 0 chr12 67492455 67492568 -53764962 + Lx2 LINE L1 6883 6996 -1 7 1099 254 152 65 11 chr12 67492583 67492676 -53764854 + (TA)n Simple_repeat Simple_repeat 2 99 0 7 1099 769 124 0 0 chr12 67492676 67492797 -53764733 - Lx LINE L1 -90 6564 6444 7 1099 428 0 19 0 chr12 67492850 67492902 -53764628 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1099 651 318 33 12 chr12 67493378 67493620 -53763910 + Lx8 LINE L1 6246 6492 -981 7 1099 579 29 0 0 chr12 67493685 67493754 -53763776 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1099 613 164 96 23 chr12 67493754 67493963 -53763567 + RMER6D LTR ERVK 374 690 0 7 1099 25 65 0 0 chr12 67495302 67495348 -53762182 + AT_rich Low_complexity Low_complexity 1 46 0 7 1099 1141 68 7 0 chr12 67495521 67495668 -53761862 - B1_Mus1 SINE Alu 0 148 1 7 1099 1238 337 51 41 chr12 67496010 67496543 -53760987 + MTEb-int LTR MaLR 1041 1578 -2 7 1099 795 281 53 96 chr12 67496543 67496886 -53760644 + MTEb LTR MaLR 42 361 -18 7 1099 678 119 15 31 chr12 67497259 67497389 -53760141 + RLTR9C LTR ERVK 266 393 0 7 1099 478 133 27 0 chr12 67497389 67497464 -53760066 + Lx7 LINE L1 6448 6524 -1172 7 1099 12571 86 33 1 chr12 67497526 67500000 -53757530 + L1Md_F LINE L1 365 2921 -2962 7 137 19051 82 11 1 chr12 67500000 67502637 -53754893 + L1Md_F2 LINE L1 2922 5586 -297 1 1100 7263 70 22 2 chr12 67502638 67503602 -53753928 + L1Md_F2 LINE L1 5588 6570 -12 1 1100 2070 91 40 21 chr12 67503991 67504318 -53753212 - L1_Mus3 LINE L1 0 6638 6306 2 1100 268 222 16 0 chr12 67504655 67504718 -53752812 + Lx9 LINE L1 7563 7626 -18 3 1100 277 286 77 0 chr12 67505193 67505284 -53752246 + L1MC4 LINE L1 6488 6585 -1457 4 1100 995 297 21 49 chr12 67505296 67505685 -53751845 - MLT1B LTR MaLR -6 384 7 5 1100 232 292 153 20 chr12 67506437 67506535 -53750995 + PB1D10 SINE Alu 1 111 -6 6 1100 183 42 0 0 chr12 67506554 67506578 -53750952 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1100 993 196 152 52 chr12 67507800 67508035 -53749495 + RMER6C LTR ERVK 12 278 -412 8 1100 2990 18 0 0 chr12 67508035 67508372 -53749158 - IAPLTR1a_Mm LTR ERVK 0 337 1 9 1100 993 196 152 52 chr12 67508372 67508405 -53749125 + RMER6C LTR ERVK 279 307 -383 8 1100 55411 19 17 4 chr12 67508405 67514763 -53742767 - IAPEz-int LTR ERVK -33 6448 8 1 1100 2949 24 0 0 chr12 67514763 67515100 -53742430 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1100 451 45 15 15 chr12 67515158 67515225 -53742305 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1100 546 182 0 0 chr12 67515230 67515329 -53742201 + RMER6C LTR ERVK 592 690 0 8 1100 1440 230 51 3 chr12 67516127 67516480 -53741050 - ORR1D1 LTR MaLR -1 373 4 1 1100 965 203 65 53 chr12 67516499 67516831 -53740699 - RMER6A LTR ERVK -4 716 365 1 1100 2827 85 0 3 chr12 67516943 67517322 -53740208 - L1_Mus1 LINE L1 0 6567 6190 1 1100 1881 191 34 87 chr12 67517326 67517774 -53739756 + RMER6B LTR ERVK 30 453 -8 1 1100 606 28 0 0 chr12 67517774 67517846 -53739684 + (GAGAA)n Simple_repeat Simple_repeat 4 75 0 1 1100 2623 179 78 63 chr12 67517847 67518436 -53739094 + MYSERV6-int LTR ERVK 2 599 -8360 1 1100 6939 157 16 19 chr12 67518424 67519697 -53737833 + MYSERV6-int LTR ERVK 1146 2414 -6545 1 1100 566 103 107 41 chr12 67519741 67519863 -53737667 + MYSERV6-int LTR ERVK 4899 5028 -3931 1 1100 1395 169 99 21 chr12 67519882 67520166 -53737364 + MYSERV6-int LTR ERVK 4940 5245 -3714 1 1100 7618 76 3 1 chr12 67520166 67521473 -53736057 - L1_Mus2 LINE L1 0 6566 5257 1 1100 3577 85 2 0 chr12 67521461 67521942 -53735588 + L1_Mus2 LINE L1 4794 5275 -608 1 1100 5087 147 58 40 chr12 67521959 67522845 -53734685 + MYSERV6-int LTR ERVK 5262 6167 -2792 1 1100 2049 75 0 72 chr12 67522845 67523176 -53734354 + L1Md_F2 LINE L1 6275 6581 -1 1 1100 5087 147 58 40 chr12 67523176 67523266 -53734264 + MYSERV6-int LTR ERVK 6168 6256 -2703 1 1100 436 154 80 183 chr12 67523266 67523441 -53734089 - RMER6C LTR ERVK -533 157 1 1 1100 207 0 0 0 chr12 67523955 67523978 -53733552 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1100 297 0 0 0 chr12 67524505 67524538 -53732992 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1100 399 212 0 0 chr12 67524690 67524770 -53732760 - Lx8 LINE L1 -1010 6463 6384 2 1100 706 316 17 0 chr12 67524943 67525120 -53732410 + B4A SINE B4 48 227 -65 2 1100 274 388 38 16 chr12 67525356 67525542 -53731988 + MamGypLTR2c LTR Gypsy 873 1062 -6 2 1100 571 250 9 0 chr12 67526088 67526200 -53731330 + B4A SINE B4 175 287 -5 2 1100 2188 26 1 8 chr12 67526335 67526629 -53730901 + L1Md_F3 LINE L1 6306 6699 -301 2 1100 565 303 78 58 chr12 67527555 67527797 -53729733 + MLT1E LTR MaLR 404 650 -3 2 1100 228 122 0 0 chr12 67528239 67528280 -53729250 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1100 526 309 31 41 chr12 67528436 67528632 -53728898 + B3A SINE B2 5 198 0 2 1100 565 280 107 0 chr12 67528977 67529127 -53728403 - B3A SINE B2 -32 166 1 3 1100 22 56 0 0 chr12 67529605 67529641 -53727889 + AT_rich Low_complexity Low_complexity 1 36 0 3 1100 23 0 0 0 chr12 67530121 67530144 -53727386 + AT_rich Low_complexity Low_complexity 1 23 0 3 1100 26 0 0 0 chr12 67530994 67531020 -53726510 + AT_rich Low_complexity Low_complexity 1 26 0 3 1100 1468 182 62 142 chr12 67531127 67531544 -53725986 - ORR1C2 LTR MaLR 0 384 1 3 1100 813 305 59 29 chr12 67531551 67531943 -53725587 - Lx8 LINE L1 -153 7320 6922 3 1100 2308 167 13 2 chr12 67532738 67533135 -53724395 - ORR1C2-int LTR MaLR -119 1390 990 3 1100 525 44 0 0 chr12 67533135 67533203 -53724327 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1100 26 0 0 0 chr12 67533726 67533752 -53723778 + AT_rich Low_complexity Low_complexity 1 26 0 3 1100 184 72 23 45 chr12 67534718 67534762 -53722768 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 3 1100 1096 249 84 41 chr12 67534825 67535232 -53722298 - RMER12B LTR ERVK 0 1404 979 3 1100 198 0 0 0 chr12 67535241 67535263 -53722267 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 4 1100 5227 114 20 1 chr12 67535263 67536042 -53721488 - Lx3_Mus LINE L1 -20 6989 6195 4 1100 1477 109 0 5 chr12 67536049 67536260 -53721270 - L1_Mur1 LINE L1 -102 5784 5575 4 1100 4495 205 42 45 chr12 67536260 67537242 -53720288 - RMER12B LTR ERVK -425 979 1 3 1100 1191 166 62 0 chr12 67538074 67538285 -53719245 - URR1B DNA MER1_type 0 225 2 4 1100 6722 49 5 9 chr12 67540947 67541796 -53715734 - L1_Mus1 LINE L1 -1 6566 5722 4 1100 2301 156 20 6 chr12 67541963 67542362 -53715168 + ORR1B1 LTR MaLR 14 394 0 4 1100 27 0 0 0 chr12 67542572 67542599 -53714931 + AT_rich Low_complexity Low_complexity 1 27 0 4 1100 599 48 0 12 chr12 67542712 67542796 -53714734 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 4 1100 438 382 37 14 chr12 67542803 67543018 -53714512 + B4A SINE B4 27 246 -46 4 1100 29 60 0 0 chr12 67544013 67544063 -53713467 + AT_rich Low_complexity Low_complexity 1 50 0 4 1100 814 224 304 25 chr12 67544090 67544370 -53713160 + ORR1D2 LTR MaLR 1 358 -12 5 1100 1208 138 32 0 chr12 67544372 67544589 -53712941 - Lx LINE L1 -6 6648 6425 5 1100 23 0 0 0 chr12 67545005 67545028 -53712502 + AT_rich Low_complexity Low_complexity 1 23 0 5 1100 241 146 17 81 chr12 67545071 67545243 -53712287 + (TATAA)n Simple_repeat Simple_repeat 1 161 0 5 1100 262 211 0 17 chr12 67545310 67545368 -53712162 + RLTR12B LTR ERVK 49 105 -423 5 1100 1194 310 101 90 chr12 67545588 67545877 -53711653 + Lx8 LINE L1 6454 6740 -733 5 1100 553 69 431 0 chr12 67545877 67545979 -53711551 - B1_Mm SINE Alu 0 147 2 5 1100 1194 310 101 90 chr12 67545979 67546511 -53711019 + Lx8 LINE L1 6741 7284 -189 5 1100 262 0 26 26 chr12 67546553 67546592 -53710938 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1100 7191 86 8 20 chr12 67548745 67549760 -53707770 - L1_Mm LINE L1 -19 5864 4862 5 1100 620 286 21 43 chr12 67549996 67550182 -53707348 - B3A SINE B2 -16 182 1 5 1100 395 297 66 26 chr12 67550604 67550756 -53706774 + RSINE1 SINE B4 2 159 -6 6 1100 2798 103 5 0 chr12 67551244 67551642 -53705888 - Lx3B LINE L1 -210 5676 5277 6 1100 7701 124 33 34 chr12 67551635 67552931 -53704599 + Lx3B LINE L1 5678 6972 -1 6 1100 22 70 0 0 chr12 67552932 67552975 -53704555 + AT_rich Low_complexity Low_complexity 1 43 0 6 1100 374 288 167 0 chr12 67553105 67553237 -53704293 + RSINE1 SINE B4 4 157 -8 6 1100 306 0 0 0 chr12 67553304 67553338 -53704192 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 6 1100 22 35 0 0 chr12 67553790 67553819 -53703711 + AT_rich Low_complexity Low_complexity 1 29 0 6 1100 22 0 0 0 chr12 67554590 67554612 -53702918 + AT_rich Low_complexity Low_complexity 1 22 0 6 1100 4133 34 12 0 chr12 67554632 67555131 -53702399 + L1Md_F3 LINE L1 6079 6583 -1 6 1100 2701 95 0 15 chr12 67555412 67555809 -53701721 + L1Md_F2 LINE L1 6192 6582 0 6 1100 362 291 52 44 chr12 67557204 67557401 -53700129 - L2b LINE L2 -4 3383 3197 6 1100 183 100 0 0 chr12 67558814 67558844 -53698686 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1100 267 393 110 12 chr12 67559148 67559485 -53698045 - L2 LINE L2 -463 2956 2587 7 1100 269 360 49 21 chr12 67560439 67560581 -53696949 - LTR16C LTR ERVL -59 430 285 7 1100 553 271 97 68 chr12 67560984 67561468 -53696062 + L1MD1 LINE L1 5458 5955 -287 7 1100 235 330 146 11 chr12 67561509 67561770 -53695760 + L1MD1 LINE L1 6063 6358 -1 7 1100 22 0 0 0 chr12 67562073 67562095 -53695435 + AT_rich Low_complexity Low_complexity 1 22 0 7 1100 722 276 30 12 chr12 67562598 67562767 -53694763 - B4A SINE B4 0 292 121 7 1100 336 127 0 0 chr12 67563040 67563095 -53694435 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 7 1100 702 291 6 6 chr12 67563097 67563280 -53694250 - B3A SINE B2 -15 183 1 7 1100 216 0 0 0 chr12 67564318 67564342 -53693188 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1100 214 173 12 85 chr12 67565200 67565245 -53692285 + T-rich Low_complexity Low_complexity 42 80 0 7 1100 454 292 7 7 chr12 67565245 67565383 -53692147 - B1F SINE Alu -9 140 3 8 1100 214 173 12 85 chr12 67565383 67565419 -53692111 + T-rich Low_complexity Low_complexity 5 41 0 8 1100 373 260 9 19 chr12 67565850 67565956 -53691574 + ID_B1 SINE B4 119 223 -1 8 1100 23 54 0 0 chr12 67570996 67571033 -53686497 + AT_rich Low_complexity Low_complexity 1 37 0 8 1100 236 120 0 20 chr12 67571805 67571856 -53685674 + (CAA)n Simple_repeat Simple_repeat 2 51 0 8 1100 183 235 0 0 chr12 67572156 67572207 -53685323 + T-rich Low_complexity Low_complexity 128 178 0 8 1100 198 128 0 0 chr12 67573113 67573152 -53684378 + (T)n Simple_repeat Simple_repeat 1 39 0 8 1100 21 36 0 0 chr12 67573570 67573598 -53683932 + AT_rich Low_complexity Low_complexity 1 28 0 8 1100 714 158 79 0 chr12 67574946 67575101 -53682429 + B2_Mm2 SINE B2 3 180 -36 8 1100 186 43 0 0 chr12 67575102 67575125 -53682405 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 8 1100 21 0 0 0 chr12 67576374 67576395 -53681135 + AT_rich Low_complexity Low_complexity 1 21 0 9 1100 678 281 30 94 chr12 67577299 67577660 -53679870 + RLTR15 LTR ERVK 4 341 -18 9 1100 464 117 13 0 chr12 67577682 67577759 -53679771 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1100 842 220 33 19 chr12 67577772 67577985 -53679545 - Lx9 LINE L1 -182 7462 7247 9 1100 1008 211 20 0 chr12 67578730 67578934 -53678596 + B3 SINE B2 1 208 -8 9 1100 522 296 36 36 chr12 67579748 67579944 -53677586 - B3A SINE B2 0 198 3 9 1100 21 0 0 0 chr12 67580509 67580530 -53677000 + AT_rich Low_complexity Low_complexity 1 21 0 9 1100 342 322 102 32 chr12 67581790 67582233 -53675297 + L1MEg LINE L1 695 1168 -5232 9 1100 351 285 44 41 chr12 67582318 67582746 -53674784 + L1MEg LINE L1 1347 1828 -4587 9 1100 21 0 0 0 chr12 67583371 67583392 -53674138 + AT_rich Low_complexity Low_complexity 1 21 0 9 1100 2770 32 0 6 chr12 67584031 67584378 -53673152 + ORR1A0 LTR MaLR 1 345 -1 9 1100 227 31 31 0 chr12 67584822 67584854 -53672676 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1100 1103 93 0 6 chr12 67585431 67585594 -53671936 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 1 1100 324 70 0 0 chr12 67586392 67586435 -53671095 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1100 573 267 13 52 chr12 67587332 67587486 -53670044 - B1_Mur3 SINE Alu 0 149 2 1 1100 467 334 92 39 chr12 67587985 67588410 -53669120 + MLT1D LTR MaLR 25 493 -12 1 1100 281 349 85 23 chr12 67588696 67588825 -53668705 - MIRb SINE MIR -87 181 45 1 1100 22 0 0 0 chr12 67589770 67589792 -53667738 + AT_rich Low_complexity Low_complexity 1 22 0 1 1100 281 253 36 12 chr12 67590162 67590246 -53667284 + MTE2a LTR MaLR 287 372 -7 1 1100 28 61 0 0 chr12 67590336 67590385 -53667145 + AT_rich Low_complexity Low_complexity 1 49 0 1 1100 23 54 0 0 chr12 67590539 67590576 -53666954 + AT_rich Low_complexity Low_complexity 1 37 0 1 1100 339 258 222 23 chr12 67593171 67593342 -53664188 - B3 SINE B2 -9 207 3 1 1100 237 385 7 15 chr12 67593755 67593892 -53663638 + L4 LINE RTE 1373 1508 -521 1 1100 27 49 0 0 chr12 67594477 67594518 -53663012 + AT_rich Low_complexity Low_complexity 1 41 0 1 1100 476 331 81 6 chr12 67594681 67594842 -53662688 + RMER30 DNA MER1_type 5 177 -25 1 1100 393 158 0 0 chr12 67595715 67595797 -53661733 - Lx LINE L1 0 6654 6573 1 1100 887 298 38 88 chr12 67595831 67596255 -53661275 + MTE2a LTR MaLR 1 405 -14 1 1100 720 379 87 34 chr12 67596376 67596873 -53660657 + MLT1F2 LTR MaLR 1 523 -37 1 1100 910 299 58 21 chr12 67597243 67597571 -53659959 - Tigger1 DNA MER2_type -1 2417 2078 1 1100 7338 96 11 1 chr12 67597573 67598662 -53658868 - L1_Mus3 LINE L1 -1 6637 5538 1 1100 643 306 59 48 chr12 67598664 67598935 -53658595 - Tigger1 DNA MER2_type -349 2069 1796 1 1100 317 146 0 0 chr12 67599151 67599199 -53658331 - Tigger1 DNA MER2_type -1061 1357 1310 1 1100 1555 247 14 14 chr12 67599207 67599573 -53657957 - Lx5 LINE L1 -1 7049 6684 1 1100 552 255 111 42 chr12 67599575 67599792 -53657738 - Tigger1 DNA MER2_type -1092 1326 1095 1 1100 994 183 52 14 chr12 67599800 67600011 -53657519 - URR1A DNA MER1_type -1 225 7 1 1100 1196 329 116 58 chr12 67600025 67600654 -53656876 - Tigger1 DNA MER2_type -1324 1094 435 1 1100 1375 33 11 11 chr12 67600654 67600840 -53656690 + L1Md_F3 LINE L1 6399 6584 0 1 1100 1196 329 116 58 chr12 67600840 67601153 -53656377 - Tigger1 DNA MER2_type -1984 434 99 1 1100 564 324 84 18 chr12 67601208 67601491 -53656039 + RMER5 LTR ERV1 36 337 -197 1 1100 2310 165 3 3 chr12 67601491 67601874 -53655656 + ORR1B1 LTR MaLR 1 383 -11 1 1100 345 257 65 19 chr12 67601931 67602038 -53655492 + RMER5 LTR ERV1 423 534 0 1 1100 360 327 10 0 chr12 67602038 67602138 -53655392 - Tigger1 DNA MER2_type -2316 102 2 1 1100 259 85 21 21 chr12 67602543 67602591 -53654939 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1100 340 309 52 40 chr12 67603057 67603226 -53654304 + MIRb SINE MIR 21 200 -68 1 1100 23 33 0 0 chr12 67603704 67603734 -53653796 + AT_rich Low_complexity Low_complexity 1 30 0 1 1100 315 24 0 0 chr12 67603815 67603856 -53653674 - L1_Mm LINE L1 -4505 1378 1338 1 1100 4841 19 2 2 chr12 67603852 67604398 -53653132 + L1_Mm LINE L1 5041 5586 -297 1 1100 8698 15 1 0 chr12 67604398 67605393 -53652137 + L1Md_A LINE L1 5587 6582 0 1 1100 4841 19 2 2 chr12 67605393 67605417 -53652113 + L1_Mm LINE L1 5587 5610 -273 1 1100 423 0 0 0 chr12 67605644 67605691 -53651839 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1100 1128 125 4 78 chr12 67605932 67606180 -53651350 - ORR1A2 LTR MaLR 0 346 5 1 1100 21 36 0 0 chr12 67606246 67606274 -53651256 + AT_rich Low_complexity Low_complexity 1 28 0 1 1100 276 200 0 0 chr12 67606359 67606429 -53651101 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1100 4634 64 5 11 chr12 67609159 67609773 -53647757 + L1Md_F2 LINE L1 5962 6571 -11 1 1100 901 229 44 0 chr12 67610117 67610322 -53647208 + B3 SINE B2 2 215 -1 1 1100 194 105 0 26 chr12 67610421 67610460 -53647070 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1100 546 125 27 0 chr12 67610686 67610798 -53646732 + (TA)n Simple_repeat Simple_repeat 2 116 0 1 1100 1245 236 24 32 chr12 67610806 67611183 -53646347 + ORR1D1 LTR MaLR 1 374 0 1 1100 523 293 81 178 chr12 67611491 67611629 -53645901 + MTEb LTR MaLR 1 113 -266 1 1100 1089 90 0 0 chr12 67611629 67611773 -53645757 + B1_Mus2 SINE Alu 2 145 -2 1 1100 525 293 81 178 chr12 67611773 67611790 -53645740 + MTEb LTR MaLR 114 114 -265 1 1100 519 45 0 0 chr12 67611790 67611856 -53645674 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 1 1100 525 293 81 178 chr12 67611856 67612081 -53645449 + MTEb LTR MaLR 114 345 -34 1 1100 279 330 18 83 chr12 67612247 67612356 -53645174 + PB1D10 SINE Alu 3 104 -13 1 1100 341 293 14 134 chr12 67612432 67612574 -53644956 + RSINE1 SINE B4 3 127 -38 1 1100 22 35 0 0 chr12 67613341 67613370 -53644160 + AT_rich Low_complexity Low_complexity 1 29 0 1 1100 3026 164 92 32 chr12 67615200 67615516 -53642014 + RMER6C LTR ERVK 1 337 -353 1 1100 414 0 0 0 chr12 67615516 67615562 -53641968 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1100 3026 164 92 32 chr12 67615562 67615896 -53641634 + RMER6C LTR ERVK 338 690 0 1 1100 180 0 0 0 chr12 67617286 67617306 -53640224 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1100 288 137 0 0 chr12 67617382 67617433 -53640097 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1100 659 252 131 25 chr12 67617783 67618027 -53639503 + Lx9 LINE L1 7163 7432 -212 1 1100 15047 100 12 8 chr12 67618012 67620334 -53637196 - L1_Mur1 LINE L1 -2352 3534 1203 1 1100 9545 95 30 9 chr12 67620349 67622320 -53635210 + Lx3_Mus LINE L1 4993 7009 0 1 1100 398 235 75 48 chr12 67622347 67622535 -53634995 + Lx9 LINE L1 7416 7608 -36 1 1100 935 312 81 20 chr12 67622611 67623053 -53634477 + Lx8 LINE L1 6864 7332 -141 1 1100 302 311 96 12 chr12 67623254 67623420 -53634110 + L1M5 LINE L1 5257 5436 -737 1 1100 329 325 118 24 chr12 67623813 67623983 -53633547 - LTR40a LTR ERVL -331 188 3 1 1100 4315 111 28 18 chr12 67625118 67625799 -53631731 + Lx LINE L1 5966 6653 -1 1 1100 27 49 0 0 chr12 67628744 67628785 -53628745 + AT_rich Low_complexity Low_complexity 1 41 0 1 1100 513 309 109 23 chr12 67629234 67629499 -53628031 - B4A SINE B4 0 292 5 1 1100 23 0 0 0 chr12 67629682 67629705 -53627825 + AT_rich Low_complexity Low_complexity 1 23 0 1 1100 21 71 0 0 chr12 67630332 67630374 -53627156 + AT_rich Low_complexity Low_complexity 1 42 0 1 1100 612 0 0 0 chr12 67630815 67630883 -53626647 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1100 428 150 12 0 chr12 67631595 67631675 -53625855 + CT-rich Low_complexity Low_complexity 2 82 0 1 1100 347 286 53 21 chr12 67631819 67632008 -53625522 + L1MD2 LINE L1 5779 5973 -386 1 1100 441 0 0 0 chr12 67632453 67632502 -53625028 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1100 26 0 0 0 chr12 67632636 67632662 -53624868 + AT_rich Low_complexity Low_complexity 1 26 0 1 1101 427 299 74 53 chr12 67633861 67633975 -53623555 - Lx8 LINE L1 0 7473 7358 1 1101 234 62 0 0 chr12 67633975 67634007 -53623523 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 1 1101 427 299 74 53 chr12 67634007 67634136 -53623394 - Lx8 LINE L1 -116 7357 7225 1 1101 264 212 156 28 chr12 67634422 67634563 -53622967 + L1MA4A LINE L1 6119 6277 -26 1 1101 4873 202 29 22 chr12 67634568 67636020 -53621510 + Lx6 LINE L1 4858 6325 -1135 1 1101 1675 200 3 73 chr12 67636160 67636516 -53621014 + Lx6 LINE L1 6312 6642 -818 1 1101 275 318 65 58 chr12 67636663 67636834 -53620696 - RSINE1 SINE B4 -1 291 78 1 1101 3703 221 53 1 chr12 67637093 67637859 -53619671 + Lx6 LINE L1 6638 7443 -17 1 1101 418 246 98 53 chr12 67639498 67639695 -53617835 + B3A SINE B2 1 193 -2 1 1101 23 68 0 0 chr12 67641764 67641808 -53615722 + AT_rich Low_complexity Low_complexity 1 44 0 1 1101 450 0 0 0 chr12 67641813 67641863 -53615667 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1 1101 209 179 0 0 chr12 67642099 67642138 -53615392 + G-rich Low_complexity Low_complexity 1 39 0 1 1101 252 362 113 21 chr12 67642138 67642279 -53615251 + MIR SINE MIR 82 235 -27 1 1101 768 304 39 23 chr12 67643006 67643265 -53614265 + B4A SINE B4 4 266 -26 1 1101 207 0 0 0 chr12 67643731 67643754 -53613776 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1101 1738 145 48 91 chr12 67643754 67644127 -53613403 + RLTR23 LTR ERV1 74 430 0 1 1101 717 184 48 111 chr12 67645030 67645219 -53612311 + RLTR41 LTR ERV1 1 177 -269 1 1101 1196 167 44 146 chr12 67645242 67645536 -53611994 + RLTR41 LTR ERV1 151 414 -32 1 1101 1144 227 109 21 chr12 67645603 67645886 -53611644 - MTD LTR MaLR -45 374 67 1 1101 186 43 0 0 chr12 67645899 67645922 -53611608 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1101 21 0 0 0 chr12 67647307 67647328 -53610202 + AT_rich Low_complexity Low_complexity 1 21 0 1 1101 22 80 0 0 chr12 67647359 67647409 -53610121 + AT_rich Low_complexity Low_complexity 1 50 0 1 1101 739 236 56 60 chr12 67647421 67647637 -53609893 - B3 SINE B2 0 216 2 1 1101 441 54 0 0 chr12 67647649 67647705 -53609825 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1101 245 274 66 40 chr12 67647784 67647860 -53609670 + PB1D10 SINE Alu 18 95 -22 1 1101 243 354 30 0 chr12 67648886 67648985 -53608545 - MIRb SINE MIR -100 168 67 1 1101 195 100 0 0 chr12 67649353 67649383 -53608147 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1101 783 273 15 0 chr12 67649589 67649787 -53607743 + B3 SINE B2 2 202 -14 1 1101 198 0 0 0 chr12 67649790 67649812 -53607718 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1101 22 35 0 0 chr12 67650033 67650062 -53607468 + AT_rich Low_complexity Low_complexity 1 29 0 1 1101 529 320 34 0 chr12 67650072 67650219 -53607311 + RSINE1 SINE B4 2 153 -12 1 1101 26 50 0 0 chr12 67651330 67651370 -53606160 + AT_rich Low_complexity Low_complexity 1 40 0 1 1101 964 111 0 1 chr12 67651663 67651813 -53605717 + Lx2 LINE L1 6508 6641 -356 1 1101 1476 108 0 0 chr12 67651815 67652037 -53605493 + Lx2 LINE L1 6775 6996 -1 1 1101 206 128 0 25 chr12 67652514 67652554 -53604976 + A-rich Low_complexity Low_complexity 2 40 0 1 1101 207 0 0 0 chr12 67652996 67653019 -53604511 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1101 207 0 0 0 chr12 67653567 67653590 -53603940 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1101 3446 147 8 24 chr12 67655586 67656171 -53601359 + Lx2 LINE L1 6418 6993 -4 1 1101 512 61 0 12 chr12 67656239 67656307 -53601223 + L1Md_F2 LINE L1 6497 6563 -19 1 1101 342 0 0 0 chr12 67656307 67656345 -53601185 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1101 512 61 0 12 chr12 67656345 67656359 -53601171 + L1Md_F2 LINE L1 6564 6577 -5 1 1101 606 49 0 0 chr12 67657853 67657935 -53599595 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1101 243 79 0 0 chr12 67658231 67658269 -53599261 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1101 1569 243 62 5 chr12 67658283 67658655 -53598875 + MTD LTR MaLR 13 405 -14 2 1101 205 231 0 19 chr12 67660077 67660130 -53597400 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1101 2193 243 101 161 chr12 67660203 67661111 -53596419 - RMER1B Other Other -9 1057 213 2 1101 753 12 0 0 chr12 67661111 67661197 -53596333 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 1101 2125 243 101 161 chr12 67661197 67661373 -53596157 - RMER1A Other Other -818 212 2 2 1101 1471 226 120 37 chr12 67661394 67661876 -53595654 - RMER1B Other Other -500 566 45 2 1101 405 252 172 31 chr12 67662378 67662754 -53594776 - L1M5 LINE L1 -607 5555 5131 2 1101 240 122 0 0 chr12 67662947 67662988 -53594542 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1101 692 312 33 37 chr12 67663020 67663293 -53594237 - B4A SINE B4 -18 274 3 2 1101 391 273 132 83 chr12 67663484 67663772 -53593758 - L1M5 LINE L1 -1456 4690 4389 2 1101 562 326 78 4 chr12 67663805 67664048 -53593482 + MER2 DNA MER2_type 4 264 -81 2 1101 426 369 99 26 chr12 67664372 67664878 -53592652 - L1M5 LINE L1 -3483 2663 2121 2 1101 6824 39 12 0 chr12 67665007 67665832 -53591698 - L1Md_F2 LINE L1 -1 6581 5747 2 1101 359 329 61 14 chr12 67667001 67667149 -53590381 + RMER10B LTR ERVL 244 398 0 2 1101 21 36 0 0 chr12 67667372 67667400 -53590130 + AT_rich Low_complexity Low_complexity 1 28 0 2 1101 22 35 0 0 chr12 67667543 67667572 -53589958 + AT_rich Low_complexity Low_complexity 1 29 0 2 1101 459 278 109 109 chr12 67668070 67668563 -53588967 + RLTR12B LTR ERVK 11 503 -25 2 1101 196 53 0 50 chr12 67670074 67670114 -53587416 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 2 1101 1127 69 0 7 chr12 67670124 67670270 -53587260 - B1_Mus2 SINE Alu -1 146 2 2 1101 3706 171 86 80 chr12 67672150 67673035 -53584495 + RMER19B LTR ERVK 1 890 -12 2 1101 361 105 0 46 chr12 67673120 67673228 -53584302 - B2_Mm2 SINE B2 -10 185 47 2 1101 749 133 193 0 chr12 67673288 67673438 -53584092 - B2_Mm1t SINE B2 -13 180 2 2 1101 261 182 0 0 chr12 67674130 67674185 -53583345 + T-rich Low_complexity Low_complexity 1 55 0 2 1101 234 0 0 0 chr12 67674871 67674897 -53582633 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1101 25 0 0 0 chr12 67674994 67675019 -53582511 + AT_rich Low_complexity Low_complexity 1 25 0 2 1101 211 176 0 0 chr12 67675126 67675160 -53582370 + (CTG)n Simple_repeat Simple_repeat 2 35 0 2 1101 231 250 18 0 chr12 67675165 67675221 -53582309 - Lx8 LINE L1 -132 7341 7285 2 1101 306 0 0 0 chr12 67675262 67675296 -53582234 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2 1101 1044 110 0 7 chr12 67675301 67675447 -53582083 - B1_Mm SINE Alu -2 145 1 2 1101 292 329 0 0 chr12 67675453 67675529 -53582001 - Lx8 LINE L1 -225 7248 7173 2 1101 564 249 22 88 chr12 67675527 67675800 -53581730 + L1_Mur2 LINE L1 3393 3647 -2230 2 1101 229 346 49 12 chr12 67675894 67675976 -53581554 - RLTR18B LTR ERVK -308 204 120 2 1101 445 319 78 42 chr12 67676059 67676226 -53581304 - RLTR18 LTR ERVK -443 173 1 2 1101 182 274 110 0 chr12 67676245 67676318 -53581212 + MIR SINE MIR 124 204 -58 2 1101 1271 235 98 72 chr12 67676699 67677158 -53580372 + RMER13A LTR ERVK 1 471 -389 2 1101 327 290 39 29 chr12 67677391 67677494 -53580036 - U6 snRNA snRNA -3 104 1 2 1101 6321 66 5 21 chr12 67677583 67678419 -53579111 + RLTR13B2 LTR ERVK 1 822 0 2 1101 21 0 0 0 chr12 67680937 67680958 -53576572 + AT_rich Low_complexity Low_complexity 1 21 0 2 1101 210 118 0 0 chr12 67681832 67681866 -53575664 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1101 207 0 0 0 chr12 67681914 67681937 -53575593 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1101 405 0 0 0 chr12 67681937 67681981 -53575549 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1101 282 29 0 0 chr12 67682322 67682357 -53575173 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1101 937 192 132 104 chr12 67682370 67682794 -53574736 - RMER10A LTR ERVL -6 436 1 2 1101 1706 43 0 0 chr12 67682807 67683017 -53574513 - L1Md_T LINE L1 0 6582 6373 2 1101 309 234 0 0 chr12 67683070 67683134 -53574396 - MTEa LTR MaLR 0 379 316 2 1101 1083 93 0 0 chr12 67683178 67683408 -53574122 + (TG)n Simple_repeat Simple_repeat 1 230 0 2 1101 384 310 24 37 chr12 67684619 67684783 -53572747 + RLTR14 LTR ERV1 221 382 0 2 1101 198 0 0 0 chr12 67685163 67685185 -53572345 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1101 243 88 0 0 chr12 67685185 67685218 -53572312 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1101 27 0 0 0 chr12 67685287 67685314 -53572216 + AT_rich Low_complexity Low_complexity 1 27 0 2 1101 614 257 7 7 chr12 67685488 67685625 -53571905 + B1_Mur2 SINE Alu 6 142 -7 2 1101 414 0 0 0 chr12 67685689 67685735 -53571795 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2 1101 586 343 135 8 chr12 67687286 67687530 -53570000 + RCHARR1 DNA MER1_type 98 372 -602 2 1101 5468 49 2 33 chr12 67687532 67688632 -53568898 + L1Md_A LINE L1 591 1648 -4235 2 1101 620 14 0 0 chr12 67688622 67688696 -53568834 + L1Md_A LINE L1 2584 2657 -3226 2 1101 4489 36 0 0 chr12 67688696 67689230 -53568300 + L1Md_A LINE L1 6049 6582 0 2 1101 259 129 44 88 chr12 67689231 67689299 -53568231 + RCHARR1 DNA MER1_type 364 428 -546 2 1101 735 244 21 153 chr12 67689304 67689735 -53567795 + RMER17C LTR ERVK 5 378 -32 2 1101 1491 254 109 13 chr12 67689736 67690211 -53567319 + RCHARR1 DNA MER1_type 454 974 0 2 1101 645 242 0 67 chr12 67690266 67690430 -53567100 - ID_B1 SINE B4 0 224 72 2 1101 1664 157 36 117 chr12 67690559 67690863 -53566667 + RMER17C LTR ERVK 1 262 -148 2 1101 594 28 0 0 chr12 67690863 67690935 -53566595 + (CTATA)n Simple_repeat Simple_repeat 1 72 0 2 1101 1664 157 36 117 chr12 67690935 67691076 -53566454 + RMER17C LTR ERVK 263 409 -1 2 1101 5212 95 29 0 chr12 67691086 67691836 -53565694 - L1_Mus4 LINE L1 0 6636 5865 2 1101 340 106 0 0 chr12 67691836 67691883 -53565647 - L1_Mus4 LINE L1 -720 5916 5870 2 1101 525 16 0 0 chr12 67692173 67692235 -53565295 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2 1101 238 275 24 48 chr12 67693203 67693287 -53564243 + ID4 SINE ID 2 83 0 2 1101 354 80 0 0 chr12 67693747 67693797 -53563733 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1101 229 217 0 24 chr12 67694061 67694146 -53563384 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1101 482 0 17 0 chr12 67694198 67694256 -53563274 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2 1101 505 244 141 8 chr12 67694922 67695050 -53562480 + B1_Mur3 SINE Alu 4 148 -1 2 1101 395 202 0 11 chr12 67695058 67695123 -53562407 + polypurine Low_complexity Low_complexity 2 66 0 2 1101 1034 144 0 6 chr12 67695123 67695304 -53562226 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1101 395 202 0 11 chr12 67695304 67695333 -53562197 + polypurine Low_complexity Low_complexity 67 95 0 2 1101 224 338 81 33 chr12 67696340 67696473 -53561057 + B1F SINE Alu 3 147 -2 2 1101 799 170 44 6 chr12 67696550 67696710 -53560820 - Lx9 LINE L1 -179 7465 7300 2 1101 27 62 0 0 chr12 67696935 67696983 -53560547 + AT_rich Low_complexity Low_complexity 1 48 0 2 1101 1727 224 83 52 chr12 67697371 67697866 -53559664 + RLTR18B LTR ERVK 1 510 -2 2 1101 2621 51 21 0 chr12 67697947 67698054 -53559476 + L1Md_F2 LINE L1 5248 5354 -529 2 1101 984 23 0 23 chr12 67698054 67698185 -53559345 + L1Md_F3 LINE L1 6442 6569 -15 2 1101 2621 51 21 0 chr12 67698185 67698409 -53559121 + L1Md_F2 LINE L1 5355 5584 -299 2 1101 7607 62 0 24 chr12 67698409 67699429 -53558101 + L1Md_F2 LINE L1 5587 6582 0 2 1101 22 70 0 0 chr12 67700211 67700254 -53557276 + AT_rich Low_complexity Low_complexity 1 43 0 2 1101 26 30 0 0 chr12 67703245 67703278 -53554252 + AT_rich Low_complexity Low_complexity 1 33 0 2 1101 314 308 110 23 chr12 67705105 67705278 -53552252 - MIR3 SINE MIR -3 205 18 2 1101 581 308 68 36 chr12 67705546 67705930 -53551600 + HAL1b LINE L1 241 636 -1373 2 1101 1204 66 0 0 chr12 67706997 67707147 -53550383 - B2_Mm1t SINE B2 -30 163 14 2 1101 1146 28 0 0 chr12 67707147 67707292 -53550238 + B1_Mm SINE Alu 3 147 0 2 1101 216 0 0 0 chr12 67707292 67707316 -53550214 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1101 412 333 9 62 chr12 67707349 67707560 -53549970 + B4 SINE B4 25 224 -68 2 1101 31 102 0 0 chr12 67708060 67708168 -53549362 + AT_rich Low_complexity Low_complexity 1 108 0 2 1101 21 0 0 0 chr12 67708354 67708375 -53549155 + AT_rich Low_complexity Low_complexity 1 21 0 2 1101 298 286 64 21 chr12 67708471 67708707 -53548823 - L1M5 LINE L1 -1750 4396 4151 2 1101 422 353 56 63 chr12 67708809 67709272 -53548258 - L1MD LINE L1 -2095 4051 3592 2 1101 240 305 0 63 chr12 67709845 67709947 -53547583 + ID4_ SINE ID 2 97 -55 2 1101 582 54 0 0 chr12 67709956 67710030 -53547500 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 2 1101 382 148 37 96 chr12 67710031 67710166 -53547364 + Lx9 LINE L1 7518 7644 0 2 1101 502 399 20 12 chr12 67710194 67710445 -53547085 + B4A SINE B4 4 256 -36 2 1101 799 185 14 0 chr12 67710448 67710594 -53546936 + B1_Mur4 SINE Alu 2 149 -1 2 1101 240 341 11 43 chr12 67711670 67711762 -53545768 + MIR SINE MIR 25 113 -95 2 1101 208 203 14 28 chr12 67712003 67712074 -53545456 + CT-rich Low_complexity Low_complexity 2 71 0 2 1101 529 195 156 0 chr12 67712074 67712202 -53545328 - B1_Mur3 SINE Alu 0 149 2 2 1101 1397 232 84 8 chr12 67712272 67712628 -53544902 + Lx2B LINE L1 6600 6982 -18 2 1101 351 0 0 0 chr12 67712770 67712809 -53544721 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1101 526 39 26 0 chr12 67714403 67714480 -53543050 + (CAAAC)n Simple_repeat Simple_repeat 2 80 0 2 1101 577 290 75 11 chr12 67715076 67715264 -53542266 + B3 SINE B2 16 215 -1 2 1101 21 57 0 0 chr12 67715352 67715387 -53542143 + AT_rich Low_complexity Low_complexity 1 35 0 2 1101 411 169 0 24 chr12 67717625 67717752 -53539778 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1101 223 357 23 15 chr12 67718191 67718322 -53539208 + GA-rich Low_complexity Low_complexity 1 132 0 3 1101 477 313 82 82 chr12 67718345 67718544 -53538986 + B4 SINE B4 2 215 -77 3 1101 477 0 0 0 chr12 67718544 67718597 -53538933 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 3 1101 477 313 82 82 chr12 67718597 67718665 -53538865 + B4 SINE B4 216 269 -23 3 1101 414 0 0 0 chr12 67718703 67718749 -53538781 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1101 333 0 0 0 chr12 67718941 67718978 -53538552 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1101 23 0 0 0 chr12 67719037 67719060 -53538470 + AT_rich Low_complexity Low_complexity 1 23 0 3 1101 357 339 51 0 chr12 67721822 67721940 -53535590 + RSINE1 SINE B4 1 124 -41 3 1101 240 35 0 0 chr12 67721943 67721972 -53535558 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1101 272 302 81 0 chr12 67722771 67722857 -53534673 - LTR87 LTR ERVL? -215 409 317 3 1101 385 323 37 22 chr12 67723236 67723372 -53534158 - B1_Mur1 SINE Alu -8 141 4 3 1101 915 212 59 0 chr12 67723639 67723842 -53533688 + B3 SINE B2 2 216 0 3 1101 2571 84 37 13 chr12 67724571 67724946 -53532584 + L1Md_F2 LINE L1 6199 6582 0 3 1101 26 30 0 0 chr12 67725596 67725629 -53531901 + AT_rich Low_complexity Low_complexity 1 33 0 3 1101 914 99 7 21 chr12 67725906 67726051 -53531479 - URR1B DNA MER1_type 0 225 83 3 1101 443 297 196 51 chr12 67726364 67726680 -53530850 + MLT1A0 LTR MaLR 1 362 -3 3 1101 419 241 36 63 chr12 67727325 67727497 -53530033 - MTE2b LTR MaLR -14 405 253 3 1101 1082 143 23 0 chr12 67727898 67728073 -53529457 - URR1A DNA MER1_type 0 226 48 3 1101 218 217 0 0 chr12 67728332 67728378 -53529152 + T-rich Low_complexity Low_complexity 1 46 0 3 1101 328 225 118 19 chr12 67728610 67728754 -53528776 + PB1D9 SINE Alu 3 146 -3 3 1101 22 0 0 0 chr12 67728798 67728820 -53528710 + AT_rich Low_complexity Low_complexity 1 22 0 3 1101 192 40 0 0 chr12 67729004 67729029 -53528501 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1101 572 220 42 17 chr12 67729031 67729151 -53528379 + B4A SINE B4 152 274 -18 3 1101 201 39 0 0 chr12 67729208 67729234 -53528296 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1101 24 32 0 0 chr12 67729400 67729431 -53528099 + AT_rich Low_complexity Low_complexity 1 31 0 3 1101 185 0 0 39 chr12 67729457 67729483 -53528047 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 3 1101 1113 74 111 0 chr12 67729486 67729648 -53527882 - B2_Mm2 SINE B2 -15 180 1 3 1101 189 0 0 0 chr12 67729682 67729703 -53527827 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1101 233 258 69 40 chr12 67730036 67730137 -53527393 + LTR86B2 LTR ERVL 384 487 0 3 1101 28 29 0 0 chr12 67733395 67733430 -53524100 + AT_rich Low_complexity Low_complexity 1 35 0 3 1101 3613 82 4 40 chr12 67733713 67734237 -53523293 - L1_Mus3 LINE L1 -6 6632 6128 3 1101 4123 107 22 0 chr12 67734239 67735147 -53522383 + L1_Mus3 LINE L1 5223 6147 -491 3 1101 24 32 0 0 chr12 67735250 67735281 -53522249 + AT_rich Low_complexity Low_complexity 1 31 0 3 1101 369 62 0 0 chr12 67735974 67736022 -53521508 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1101 183 400 0 0 chr12 67736638 67736698 -53520832 + L2b LINE L2 3296 3355 -20 3 1101 405 0 0 0 chr12 67736928 67736973 -53520557 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1101 244 211 58 0 chr12 67738538 67738590 -53518940 + BC1_Mm scRNA scRNA 2 56 -96 3 1101 628 295 35 6 chr12 67738726 67738900 -53518630 - B3A SINE B2 0 198 20 3 1101 255 369 30 15 chr12 67739920 67740052 -53517478 - ID_B1 SINE B4 -7 217 84 3 1101 594 60 0 0 chr12 67742246 67742329 -53515201 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1101 1117 127 0 34 chr12 67742375 67742554 -53514976 - B2_Mm2 SINE B2 -20 175 3 3 1101 396 0 0 0 chr12 67742621 67742665 -53514865 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1101 663 288 33 22 chr12 67743014 67743195 -53514335 + B3 SINE B2 1 183 -33 3 1101 543 174 0 0 chr12 67743733 67743848 -53513682 + (CA)n Simple_repeat Simple_repeat 2 116 0 3 1101 4802 91 55 1 chr12 67746657 67747409 -53510121 - L1_Mur1 LINE L1 -963 4923 4132 3 1101 1073 90 7 0 chr12 67747720 67747865 -53509665 + B1_Mus1 SINE Alu 2 147 -1 3 1101 247 239 29 15 chr12 67748299 67748367 -53509163 + CT-rich Low_complexity Low_complexity 2 70 0 3 1101 234 0 0 0 chr12 67749766 67749792 -53507738 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1101 411 68 26 39 chr12 67750549 67750626 -53506904 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 3 1101 373 122 27 0 chr12 67750629 67750703 -53506827 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1101 712 11 21 11 chr12 67752056 67752149 -53505381 + (GAAA)n Simple_repeat Simple_repeat 3 96 0 3 1101 232 250 61 24 chr12 67754146 67754228 -53503302 - L2a LINE L2 -12 3414 3330 3 1101 207 69 0 0 chr12 67754657 67754686 -53502844 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1101 1278 251 92 9 chr12 67756719 67757056 -53500474 - MTD LTR MaLR -13 406 42 3 1101 2352 159 32 35 chr12 67757450 67757863 -53499667 - RMER6B LTR ERVK 0 461 60 3 1101 180 0 0 0 chr12 67757863 67757883 -53499647 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1101 2352 159 32 35 chr12 67757883 67757931 -53499599 - RMER6B LTR ERVK -402 59 3 3 1101 187 245 36 36 chr12 67757982 67758037 -53499493 + L3 LINE CR1 27 81 -4408 3 1101 4401 62 11 0 chr12 67760575 67761139 -53496391 - L1_Mus1 LINE L1 -1 6566 5997 3 1101 648 349 23 0 chr12 67761665 67761929 -53495601 + Lx8 LINE L1 6929 7198 -275 3 1101 763 224 163 5 chr12 67762426 67762610 -53494920 + B3 SINE B2 1 213 -3 3 1101 240 340 47 0 chr12 67762932 67763038 -53494492 + RMER12 LTR ERVK 723 833 -489 3 1102 706 285 109 20 chr12 67766729 67766780 -53490750 + Lx7 LINE L1 6056 6107 -1589 3 1102 198 71 0 0 chr12 67766780 67766808 -53490722 + (CTAA)n Simple_repeat Simple_repeat 2 29 0 3 1102 706 285 109 20 chr12 67766808 67767050 -53490480 + Lx7 LINE L1 6108 6374 -1322 3 1102 2381 170 30 26 chr12 67767056 67767515 -53490015 + RMER6B LTR ERVK 1 461 0 3 1102 671 287 188 3 chr12 67767520 67767891 -53489639 + Lx7 LINE L1 6378 6817 -879 3 1102 189 0 0 0 chr12 67769446 67769467 -53488063 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 3 1102 1005 147 0 0 chr12 67769477 67769647 -53487883 + (TTTC)n Simple_repeat Simple_repeat 1 170 0 3 1102 654 25 0 0 chr12 67769756 67769836 -53487694 + (TTTTG)n Simple_repeat Simple_repeat 1 80 0 3 1102 230 238 66 47 chr12 67770195 67770301 -53487229 + L1MC4 LINE L1 7700 7807 -235 3 1102 297 0 0 0 chr12 67771201 67771234 -53486296 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1102 304 77 39 0 chr12 67771234 67771285 -53486245 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1102 440 308 121 50 chr12 67771617 67771955 -53485575 + ORR1D2 LTR MaLR 5 366 -4 3 1102 343 368 25 15 chr12 67772124 67772320 -53485210 - B3 SINE B2 -16 200 3 3 1102 261 0 0 0 chr12 67772603 67772632 -53484898 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1102 1369 281 42 55 chr12 67773656 67774497 -53483033 + L1_Mur3 LINE L1 1206 2035 -3845 3 1102 1167 101 0 6 chr12 67774555 67774724 -53482806 + B2_Mm2 SINE B2 1 168 -27 3 1102 2586 172 41 96 chr12 67774754 67774941 -53482589 - RMER6C LTR ERVK -70 620 452 3 1102 306 73 0 0 chr12 67774941 67774982 -53482548 + (TCG)n Simple_repeat Simple_repeat 2 42 0 3 1102 1314 172 47 14 chr12 67774982 67775260 -53482270 - Lx3C LINE L1 -8 6968 6682 3 1102 2586 172 41 96 chr12 67775260 67775727 -53481803 - RMER6C LTR ERVK -239 451 2 3 1102 217 196 200 67 chr12 67775727 67775779 -53481751 + B1_Mur4 SINE Alu 69 128 -22 3 1102 450 0 0 0 chr12 67775790 67775840 -53481690 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1102 935 209 10 5 chr12 67775870 67776062 -53481468 + Lx3C LINE L1 6682 6874 -102 3 1102 24 0 0 0 chr12 67776192 67776216 -53481314 + AT_rich Low_complexity Low_complexity 1 24 0 3 1102 1612 153 182 0 chr12 67776493 67776800 -53480730 - ORR1B2 LTR MaLR 0 367 5 3 1102 264 91 0 0 chr12 67777270 67777314 -53480216 + (CATA)n Simple_repeat Simple_repeat 2 45 0 3 1102 504 0 0 0 chr12 67777421 67777477 -53480053 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 1102 24 0 0 0 chr12 67778079 67778103 -53479427 + AT_rich Low_complexity Low_complexity 1 24 0 3 1102 461 281 8 16 chr12 67778654 67778777 -53478753 + Lx8 LINE L1 6533 6654 -819 3 1102 350 358 30 71 chr12 67778805 67779140 -53478390 + Lx8 LINE L1 7004 7328 -145 3 1102 180 77 0 0 chr12 67779140 67779166 -53478364 + (TAA)n Simple_repeat Simple_repeat 1 26 0 3 1102 350 358 30 71 chr12 67779166 67779194 -53478336 + Lx8 LINE L1 7329 7352 -121 3 1102 26 0 0 0 chr12 67779925 67779951 -53477579 + AT_rich Low_complexity Low_complexity 1 26 0 3 1102 23 33 0 0 chr12 67780184 67780214 -53477316 + AT_rich Low_complexity Low_complexity 1 30 0 3 1102 684 294 8 0 chr12 67780456 67780627 -53476903 + Lx8 LINE L1 6825 7015 -681 3 1102 498 46 0 0 chr12 67780627 67780692 -53476838 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1102 512 298 115 19 chr12 67780692 67780729 -53476801 + Lx8 LINE L1 7016 7053 -643 3 1102 508 321 89 40 chr12 67780740 67781064 -53476466 + Lx8 LINE L1 7125 7464 -9 3 1102 26 50 0 0 chr12 67781171 67781211 -53476319 + AT_rich Low_complexity Low_complexity 1 40 0 3 1102 300 308 10 81 chr12 67781492 67781591 -53475939 + B1_Mur1 SINE Alu 41 132 -17 3 1102 1500 114 30 0 chr12 67781804 67782041 -53475489 - Lx3_Mus LINE L1 -924 6085 5842 3 1102 6335 98 13 7 chr12 67782041 67782951 -53474579 + Lx3_Mus LINE L1 6094 7009 0 3 1102 22 80 0 0 chr12 67782951 67783001 -53474529 + AT_rich Low_complexity Low_complexity 1 50 0 3 1102 237 33 0 0 chr12 67783061 67783091 -53474439 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1102 516 235 0 0 chr12 67783091 67783227 -53474303 + GA-rich Low_complexity Low_complexity 2 137 0 3 1102 309 51 0 0 chr12 67783756 67783795 -53473735 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 1102 23 0 0 0 chr12 67784458 67784481 -53473049 + AT_rich Low_complexity Low_complexity 1 23 0 3 1102 294 95 0 0 chr12 67784890 67784932 -53472598 + (GGGAGA)n Simple_repeat Simple_repeat 1 42 0 3 1102 497 44 0 14 chr12 67785178 67785247 -53472283 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1102 252 0 0 0 chr12 67785247 67785274 -53472256 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1102 518 288 0 23 chr12 67785276 67785404 -53472126 - B3 SINE B2 -53 163 39 4 1102 426 85 0 0 chr12 67788084 67788143 -53469387 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1102 1969 260 59 23 chr12 67788207 67788767 -53468763 + Lx7 LINE L1 6580 7159 -537 4 1102 382 109 35 35 chr12 67791262 67791376 -53466154 + (TA)n Simple_repeat Simple_repeat 2 115 0 4 1102 223 143 40 20 chr12 67791427 67791477 -53466053 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 1102 22 35 0 0 chr12 67791776 67791805 -53465725 + AT_rich Low_complexity Low_complexity 1 29 0 4 1102 265 355 43 0 chr12 67792833 67792926 -53464604 - PB1D10 SINE Alu -51 98 2 4 1102 497 276 0 152 chr12 67793003 67793187 -53464343 - RSINE1 SINE B4 -7 158 3 4 1102 5624 74 5 0 chr12 67793646 67794386 -53463144 + L1Md_T LINE L1 5838 6581 -1 4 1102 212 356 86 57 chr12 67795067 67795207 -53462323 + B1_Mm SINE Alu 3 146 -1 4 1102 281 306 43 5 chr12 67795596 67795783 -53461747 + L1MA5 LINE L1 6103 6296 -4 4 1102 687 107 33 13 chr12 67796520 67796672 -53460858 + (TAGA)n Simple_repeat Simple_repeat 3 157 0 4 1102 210 325 0 41 chr12 67796812 67796934 -53460596 + GA-rich Low_complexity Low_complexity 4 120 0 4 1102 337 277 126 95 chr12 67796940 67797290 -53460240 + MTEa LTR MaLR 4 364 -15 4 1102 266 319 32 11 chr12 67797549 67797644 -53459886 - PB1D7 SINE Alu -22 98 2 4 1102 272 291 13 0 chr12 67798036 67798115 -53459415 + ID4 SINE ID 2 81 -2 4 1102 613 279 122 68 chr12 67799058 67799442 -53458088 - MTD LTR MaLR -14 405 1 4 1102 25 65 0 0 chr12 67799497 67799543 -53457987 + AT_rich Low_complexity Low_complexity 1 46 0 4 1102 1353 50 11 32 chr12 67800197 67800385 -53457145 - B2_Mm1t SINE B2 0 193 10 4 1102 5172 55 0 9 chr12 67800385 67801040 -53456490 + L1Md_F2 LINE L1 4938 5586 -297 4 1102 8188 32 5 1 chr12 67801040 67802020 -53455510 + L1Md_F2 LINE L1 5587 6570 -12 4 1102 1359 144 0 9 chr12 67802654 67802871 -53454659 + L1_Mus4 LINE L1 6000 6214 -422 4 1102 4267 107 17 8 chr12 67802985 67803638 -53453892 + L1_Mus3 LINE L1 5979 6637 -1 4 1102 301 320 39 31 chr12 67804237 67804366 -53453164 - L1M2 LINE L1 -869 5274 5145 4 1102 567 307 87 40 chr12 67804623 67805534 -53451996 + L1MB1 LINE L1 5143 6099 -69 4 1102 257 0 30 0 chr12 67805535 67805568 -53451962 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1102 294 179 0 0 chr12 67805568 67805624 -53451906 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1102 212 0 36 0 chr12 67805697 67805725 -53451805 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1102 1354 75 37 0 chr12 67805725 67805912 -53451618 + B2_Mm2 SINE B2 2 195 0 4 1102 349 118 53 0 chr12 67806583 67806659 -53450871 + (CATA)n Simple_repeat Simple_repeat 2 81 0 4 1102 487 221 26 123 chr12 67807127 67807282 -53450248 + B1_Mur1 SINE Alu 9 148 -1 4 1102 411 355 0 0 chr12 67808893 67809017 -53448513 + RSINE1 SINE B4 28 151 -14 4 1102 25 0 0 0 chr12 67809286 67809311 -53448219 + AT_rich Low_complexity Low_complexity 1 25 0 4 1102 992 227 57 45 chr12 67809751 67809983 -53447547 - Lx7 LINE L1 0 7696 7454 4 1102 924 160 5 26 chr12 67809983 67810175 -53447355 + Lx2 LINE L1 6810 6997 0 4 1102 992 227 57 45 chr12 67810175 67810278 -53447252 - Lx7 LINE L1 -243 7453 7357 4 1102 201 147 0 0 chr12 67810290 67810324 -53447206 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 1102 283 179 29 15 chr12 67810340 67810408 -53447122 - Lx7 LINE L1 -337 7359 7291 4 1102 330 26 0 0 chr12 67810839 67810878 -53446652 + Lx2B LINE L1 6540 6578 -422 4 1102 412 395 0 0 chr12 67810969 67811103 -53446427 - B1F1 SINE Alu -12 137 4 4 1102 31 26 0 0 chr12 67811324 67811362 -53446168 + AT_rich Low_complexity Low_complexity 1 38 0 4 1102 2156 132 0 3 chr12 67811643 67811971 -53445559 - Lx LINE L1 -20 6634 6308 4 1102 324 337 76 17 chr12 67812008 67812180 -53445350 + MLT1B LTR MaLR 194 375 -15 4 1102 987 117 0 0 chr12 67812756 67812936 -53444594 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1102 222 37 0 0 chr12 67812938 67812965 -53444565 + (CAGAGA)n Simple_repeat Simple_repeat 1 27 0 4 1102 229 243 27 13 chr12 67812972 67813047 -53444483 + GA-rich Low_complexity Low_complexity 5 80 0 4 1102 297 75 0 0 chr12 67814258 67814298 -53443232 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1102 1189 58 6 0 chr12 67814316 67814472 -53443058 - L1Md_T LINE L1 0 6582 6426 4 1102 21 36 0 0 chr12 67815033 67815061 -53442469 + AT_rich Low_complexity Low_complexity 1 28 0 4 1102 1160 75 0 0 chr12 67815748 67815895 -53441635 + B1_Mus1 SINE Alu 2 148 0 4 1102 189 45 64 43 chr12 67815897 67815944 -53441586 + A-rich Low_complexity Low_complexity 2 49 0 4 1102 408 20 0 0 chr12 67816112 67816161 -53441369 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1102 244 306 33 66 chr12 67816306 67816397 -53441133 + RSINE1 SINE B4 78 165 0 4 1102 29 60 0 0 chr12 67816534 67816584 -53440946 + AT_rich Low_complexity Low_complexity 1 50 0 4 1102 185 266 157 27 chr12 67816691 67816838 -53440692 - L2a LINE L2 0 3426 3261 4 1102 23 0 0 0 chr12 67820465 67820488 -53437042 + AT_rich Low_complexity Low_complexity 1 23 0 4 1102 303 164 0 0 chr12 67821381 67821442 -53436088 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1102 2767 287 66 34 chr12 67822345 67823470 -53434060 + Lx9 LINE L1 6307 7467 -177 4 1102 342 45 0 0 chr12 67823484 67823528 -53434002 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 4 1102 726 235 24 65 chr12 67824394 67824640 -53432890 + Lx9 LINE L1 7399 7634 -10 4 1102 596 82 0 10 chr12 67825756 67825854 -53431676 + L1_Mus3 LINE L1 6536 6632 -6 4 1102 180 0 0 0 chr12 67825956 67825976 -53431554 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1102 362 298 65 57 chr12 67826495 67826696 -53430834 - MTEb LTR MaLR 0 379 145 4 1102 375 105 0 0 chr12 67826758 67826815 -53430715 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1102 251 347 11 0 chr12 67827979 67828074 -53429456 - ERVL-int LTR ERVL -1106 4651 4556 4 1102 389 302 38 38 chr12 67829102 67829233 -53428297 - B1F2 SINE Alu 0 149 19 4 1102 4348 169 39 7 chr12 67829319 67830075 -53427455 + Lx2 LINE L1 6099 6883 -114 4 1102 189 0 0 0 chr12 67830075 67830096 -53427434 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 4 1102 4348 169 39 7 chr12 67830096 67830158 -53427372 + Lx2 LINE L1 6884 6942 -55 4 1102 22 80 0 0 chr12 67830225 67830275 -53427255 + AT_rich Low_complexity Low_complexity 1 50 0 4 1102 619 217 47 0 chr12 67830987 67831116 -53426414 + RMER1B Other Other 654 788 -278 4 1102 6300 141 16 9 chr12 67831553 67832592 -53424938 - Lx2 LINE L1 -21 6976 5930 4 1102 1197 86 8 1 chr12 67832593 67832794 -53424736 + Lx2 LINE L1 5553 5759 -124 4 1102 2144 301 54 46 chr12 67833029 67834010 -53423520 + RMER1B Other Other 78 1052 -14 4 1102 22 0 0 0 chr12 67834074 67834096 -53423434 + AT_rich Low_complexity Low_complexity 1 22 0 4 1102 1513 284 59 20 chr12 67835827 67836410 -53421120 + Lx9 LINE L1 6601 7305 -339 4 1102 396 0 0 0 chr12 67836410 67836454 -53421076 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1102 928 359 89 13 chr12 67836454 67836542 -53420988 + Lx9 LINE L1 7235 7323 -150 4 1102 309 156 0 0 chr12 67836547 67836624 -53420906 + CT-rich Low_complexity Low_complexity 2 78 0 4 1102 288 91 0 0 chr12 67836624 67836668 -53420862 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1102 1039 342 100 20 chr12 67837878 67838520 -53419010 - Lx8 LINE L1 -2 7471 6779 4 1102 2015 332 48 15 chr12 67839653 67840539 -53416991 - Lx8 LINE L1 -38 7435 6520 4 1102 26 30 0 0 chr12 67841990 67842023 -53415507 + AT_rich Low_complexity Low_complexity 1 33 0 4 1102 686 305 11 6 chr12 67842056 67842234 -53415296 - B3A SINE B2 -16 182 4 4 1102 3338 108 0 8 chr12 67842519 67843005 -53414525 + L1_Mus2 LINE L1 6084 6565 -1 4 1102 476 357 28 0 chr12 67845002 67845184 -53412346 - B3A SINE B2 -11 187 1 4 1102 1920 312 63 56 chr12 67845296 67845414 -53412116 + MTE-int LTR MaLR 405 532 -1048 4 1102 1842 106 4 14 chr12 67845414 67845691 -53411839 + L1_Mus4 LINE L1 6360 6633 -3 4 1102 1920 312 63 56 chr12 67845691 67846400 -53411130 + MTE-int LTR MaLR 533 1238 -342 4 1102 361 360 110 108 chr12 67848203 67848629 -53408901 - LTR78 LTR ERV1 -30 1274 848 4 1102 738 248 63 15 chr12 67848687 67848892 -53408638 + B3 SINE B2 2 216 0 4 1102 1180 56 0 0 chr12 67849119 67849263 -53408267 - B1_Mus2 SINE Alu -3 144 1 4 1102 1119 279 62 25 chr12 67849354 67849758 -53407772 + Lx7 LINE L1 6780 7198 -498 4 1102 782 295 89 14 chr12 67850159 67850595 -53406935 - Tigger2b DNA MER2_type -149 577 109 4 1102 369 0 0 0 chr12 67851030 67851071 -53406459 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1102 207 0 0 0 chr12 67851071 67851093 -53406437 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1102 816 163 0 0 chr12 67852426 67852579 -53404951 + Lx LINE L1 6496 6648 -6 4 1102 441 0 0 0 chr12 67852581 67852630 -53404900 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 4 1102 327 25 0 0 chr12 67852735 67852775 -53404755 + (TTG)n Simple_repeat Simple_repeat 2 41 0 4 1102 280 328 93 33 chr12 67852803 67852986 -53404544 + RLTR20B3 LTR ERVK 109 302 -275 4 1102 414 127 0 0 chr12 67853917 67853988 -53403542 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1102 388 189 6 25 chr12 67855182 67855339 -53402191 + (TA)n Simple_repeat Simple_repeat 2 155 0 4 1102 258 324 102 0 chr12 67855655 67855763 -53401767 - B1F SINE Alu -12 137 19 4 1102 252 170 0 0 chr12 67856400 67856453 -53401077 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 4 1102 740 242 39 54 chr12 67856473 67856678 -53400852 + B3 SINE B2 12 213 -3 5 1102 411 73 0 0 chr12 67857029 67857084 -53400446 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1102 23 0 0 0 chr12 67857427 67857450 -53400080 + AT_rich Low_complexity Low_complexity 1 23 0 5 1102 2816 89 8 5 chr12 67857864 67858259 -53399271 - MTA_Mm LTR MaLR 0 396 1 5 1102 1110 76 7 0 chr12 67858327 67858471 -53399059 + B1_Mm SINE Alu 2 146 -1 5 1102 367 192 30 0 chr12 67858663 67858762 -53398768 + Lx9 LINE L1 7542 7643 -1 5 1102 203 297 114 26 chr12 67858833 67858947 -53398583 - MIR SINE MIR -55 207 84 5 1102 287 260 22 2 chr12 67859023 67859122 -53398408 + L1M2 LINE L1 5086 5227 -916 5 1102 627 88 0 0 chr12 67859610 67859701 -53397829 + (CA)n Simple_repeat Simple_repeat 1 91 0 5 1102 21 0 0 0 chr12 67860147 67860168 -53397362 + AT_rich Low_complexity Low_complexity 1 21 0 5 1102 1184 217 45 0 chr12 67860636 67860932 -53396598 - Lx4B LINE L1 -840 6218 5907 5 1102 548 29 14 0 chr12 67861246 67861316 -53396214 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1102 23 0 0 0 chr12 67861371 67861394 -53396136 + AT_rich Low_complexity Low_complexity 1 23 0 5 1102 845 268 61 46 chr12 67861799 67862003 -53395527 + B4 SINE B4 1 213 -79 5 1102 204 40 0 0 chr12 67862003 67862028 -53395502 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5 1102 845 268 61 46 chr12 67862028 67862085 -53395445 + B4 SINE B4 214 266 -26 5 1102 444 114 9 162 chr12 67862085 67862122 -53395408 - Lx4B LINE L1 -1135 5923 5890 5 1102 1623 234 19 194 chr12 67862122 67862863 -53394667 + RMER19C LTR ERVK 1 611 0 5 1102 444 114 9 162 chr12 67862863 67862930 -53394600 - Lx4B LINE L1 -1169 5889 5835 5 1102 1309 149 18 5 chr12 67862931 67863153 -53394377 - Lx4B LINE L1 -214 5663 5439 5 1102 394 113 48 0 chr12 67863155 67863217 -53394313 + L1M5 LINE L1 5695 5759 -685 5 1102 782 251 5 10 chr12 67863210 67863403 -53394127 + Lx4B LINE L1 6668 6859 -199 5 1102 890 253 89 60 chr12 67863404 67863787 -53393743 - RMER10A LTR ERVL -28 414 21 5 1102 1539 219 87 24 chr12 67864110 67864572 -53392958 - Lx7 LINE L1 0 7696 7206 5 1102 841 251 25 49 chr12 67864578 67864821 -53392709 + Lx7 LINE L1 6976 7212 -484 5 1102 1468 201 71 15 chr12 67864898 67865236 -53392294 - RMER6C LTR ERVK 0 690 334 5 1102 579 156 152 66 chr12 67865209 67865360 -53392170 - RMER6C LTR ERVK -482 208 45 5 1102 1438 265 17 45 chr12 67865380 67865902 -53391628 - RMER20A LTR ERVK -137 490 11 5 1102 32 57 0 0 chr12 67866047 67866100 -53391430 + AT_rich Low_complexity Low_complexity 1 53 0 5 1102 22 35 0 0 chr12 67867186 67867215 -53390315 + AT_rich Low_complexity Low_complexity 1 29 0 5 1102 1529 155 85 10 chr12 67868160 67868466 -53389064 - ORR1A4 LTR MaLR 0 329 1 5 1102 230 268 26 90 chr12 67869143 67869221 -53388309 + MLT1J2 LTR MaLR 176 248 -200 5 1102 26 0 0 0 chr12 67870172 67870198 -53387332 + AT_rich Low_complexity Low_complexity 1 26 0 5 1102 210 385 13 0 chr12 67870664 67870742 -53386788 - ID2 SINE ID 0 83 5 5 1102 263 26 0 49 chr12 67870958 67870999 -53386531 + (TTTTTG)n Simple_repeat Simple_repeat 5 43 0 5 1102 495 273 23 8 chr12 67871268 67871401 -53386129 + B1_Mur3 SINE Alu 1 135 -14 5 1102 482 108 12 0 chr12 67871674 67871757 -53385773 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 1102 487 357 50 25 chr12 67871990 67872231 -53385299 - MLT1F2 LTR MaLR -302 258 12 5 1102 1415 39 79 0 chr12 67872774 67872933 -53384597 + B2_Mm1t SINE B2 2 160 -33 5 1102 207 0 0 0 chr12 67872933 67872956 -53384574 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1102 1415 39 79 0 chr12 67872956 67872974 -53384556 + B2_Mm1t SINE B2 161 191 -2 5 1102 633 194 75 15 chr12 67873001 67873190 -53384340 - Lx4B LINE L1 0 7058 6860 5 1102 367 331 80 13 chr12 67873401 67873551 -53383979 + MLT1A0 LTR MaLR 19 178 -187 5 1102 513 248 19 58 chr12 67874154 67874308 -53383222 + RMER5 LTR ERV1 44 191 -343 5 1102 2071 186 33 13 chr12 67874336 67874542 -53382988 - MTC LTR MaLR -8 413 202 5 1102 453 66 0 0 chr12 67874542 67874603 -53382927 + (TTG)n Simple_repeat Simple_repeat 2 62 0 5 1102 2071 186 33 13 chr12 67874603 67874787 -53382743 - MTC LTR MaLR -220 201 17 5 1102 923 270 20 89 chr12 67874769 67874911 -53382619 + RMER5 LTR ERV1 204 336 -198 5 1102 396 103 0 0 chr12 67874911 67874969 -53382561 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1102 923 270 20 89 chr12 67874969 67875176 -53382354 + RMER5 LTR ERV1 337 529 -5 5 1102 844 264 44 58 chr12 67875296 67875570 -53381960 + RLTR28B LTR ERVL 123 392 -89 5 1102 447 19 0 0 chr12 67876234 67876286 -53381244 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1102 385 263 0 39 chr12 67876287 67876390 -53381140 - RSINE1 SINE B4 -24 141 43 5 1102 1290 246 71 126 chr12 67876616 67877197 -53380333 + RMER15 LTR ERVL 27 575 0 5 1102 1168 145 52 28 chr12 67878112 67878325 -53379205 + Lx LINE L1 6429 6646 -8 5 1102 1664 190 64 54 chr12 67879295 67879668 -53377862 - ORR1C1 LTR MaLR 0 378 2 5 1102 5225 111 53 3 chr12 67882364 67883473 -53374057 + L1Md_F2 LINE L1 355 1527 -4356 5 1102 11424 14 0 0 chr12 67883462 67884772 -53372758 + L1Md_A LINE L1 4277 5586 -297 5 1102 8862 12 0 0 chr12 67884772 67885768 -53371762 + L1Md_A LINE L1 5587 6582 0 5 1102 24041 85 3 1 chr12 67885966 67890033 -53367497 + L1Md_F2 LINE L1 1504 5586 -297 5 1102 7222 81 12 4 chr12 67890034 67891007 -53366523 + L1Md_F2 LINE L1 5588 6568 -14 5 1102 760 367 32 18 chr12 67892402 67892843 -53364687 - LTR40a LTR ERVL -1 518 72 5 1102 252 301 81 0 chr12 67893746 67893869 -53363661 - HAL1 LINE L1 -313 2194 2062 5 1102 1974 234 51 46 chr12 67894165 67894756 -53362774 - RLTR40 LTR ERVK -11 806 213 5 1102 1372 225 41 60 chr12 67894757 67895121 -53362409 - ORR1D1 LTR MaLR -16 358 2 5 1102 599 167 50 14 chr12 67895149 67895289 -53362241 - RLTR40 LTR ERVK -651 166 22 5 1103 1365 74 5 21 chr12 67896463 67896656 -53360874 - B2_Mm1t SINE B2 -2 191 2 5 1103 288 347 143 0 chr12 67897991 67898089 -53359441 + B4A SINE B4 9 120 -172 5 1103 2008 82 20 10 chr12 67898168 67898463 -53359067 + L1_Mus1 LINE L1 6270 6567 0 5 1103 21 0 0 0 chr12 67899647 67899668 -53357862 + AT_rich Low_complexity Low_complexity 1 21 0 5 1103 189 0 0 0 chr12 67900676 67900697 -53356833 + (TTCC)n Simple_repeat Simple_repeat 2 22 0 5 1103 267 133 0 0 chr12 67900799 67900844 -53356686 + (CATA)n Simple_repeat Simple_repeat 4 48 0 5 1103 378 0 0 0 chr12 67900855 67900897 -53356633 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1103 306 0 0 0 chr12 67900897 67900930 -53356600 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1103 1136 274 47 36 chr12 67900931 67901317 -53356213 + L1_Rod LINE L1 5358 5747 -100 5 1103 1138 301 65 59 chr12 67901399 67901972 -53355558 - Charlie1a DNA MER1_type -199 1256 681 5 1103 269 200 33 22 chr12 67902008 67902100 -53355430 + (CATAT)n Simple_repeat Simple_repeat 4 96 0 5 1103 246 62 0 0 chr12 67902109 67902141 -53355389 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 5 1103 366 297 76 13 chr12 67902174 67902331 -53355199 - Charlie1a DNA MER1_type -884 571 405 5 1103 2527 235 35 0 chr12 67903431 67904027 -53353503 + Lx9 LINE L1 6806 7422 -222 5 1103 273 57 0 0 chr12 67904042 67904077 -53353453 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1103 23 33 0 0 chr12 67904125 67904155 -53353375 + AT_rich Low_complexity Low_complexity 1 30 0 5 1103 541 187 0 0 chr12 67904497 67904588 -53352942 + B1_Mur3 SINE Alu 46 136 -13 5 1103 207 0 0 0 chr12 67904589 67904612 -53352918 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1103 791 198 9 90 chr12 67904744 67904966 -53352564 + Lx2B LINE L1 6794 6997 -3 5 1103 435 209 20 54 chr12 67904980 67905127 -53352403 - Lx9 LINE L1 -9 7635 7494 5 1103 1065 267 158 33 chr12 67905133 67905621 -53351909 + RMER2 LTR ERV1 8 556 -11 5 1103 5742 72 18 10 chr12 67905651 67906424 -53351106 - L1Md_F2 LINE L1 -14 6568 5790 5 1103 230 203 0 55 chr12 67906494 67906567 -53350963 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1103 800 171 31 72 chr12 67906992 67907187 -53350343 - B2_Mm2 SINE B2 -8 187 1 5 1103 360 0 0 0 chr12 67907596 67907636 -53349894 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1103 387 0 0 0 chr12 67907636 67907678 -53349852 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1103 449 186 0 8 chr12 67909072 67909197 -53348333 + (CA)n Simple_repeat Simple_repeat 2 125 0 5 1103 459 0 0 0 chr12 67909197 67909248 -53348282 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1103 2696 155 78 27 chr12 67909248 67909773 -53347757 - Lx4B LINE L1 -668 6390 5839 5 1103 3512 156 32 17 chr12 67909777 67910423 -53347107 + Lx4B LINE L1 6399 7054 -4 5 1103 608 311 78 35 chr12 67910956 67911239 -53346291 - Lx8 LINE L1 -247 7226 6932 5 1103 1109 247 38 68 chr12 67911250 67911664 -53345866 + L1_Mur3 LINE L1 4023 4428 -1452 5 1103 918 109 72 0 chr12 67911664 67911802 -53345728 - B1_Mus1 SINE Alu 0 148 1 5 1103 1109 247 38 68 chr12 67911802 67911974 -53345556 + L1_Mur3 LINE L1 4429 4591 -1289 5 1103 1024 297 88 46 chr12 67912117 67912720 -53344810 + Lx8 LINE L1 5124 5756 -91 5 1103 4443 47 9 0 chr12 67912720 67913275 -53344255 + L1Md_F3 LINE L1 6011 6570 -14 5 1103 1024 341 72 48 chr12 67913275 67913825 -53343705 + Lx8 LINE L1 5757 6354 -1119 5 1103 1069 152 15 10 chr12 67913893 67914093 -53343437 + Lx2 LINE L1 6778 6978 -19 5 1103 14332 89 17 29 chr12 67914084 67915016 -53342514 + Lx3_Mus LINE L1 3742 4653 -1233 5 1103 1797 68 0 74 chr12 67915016 67915285 -53342245 - L1_Mus2 LINE L1 -1 6565 6317 5 1103 14332 89 17 29 chr12 67915285 67916420 -53341110 + Lx3_Mus LINE L1 4654 5791 -95 5 1103 1065 94 0 0 chr12 67916420 67916558 -53340972 + B1_Mus1 SINE Alu 2 139 -9 5 1103 324 64 0 0 chr12 67916558 67916605 -53340925 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1103 14332 109 8 26 chr12 67916605 67917835 -53339695 + Lx3_Mus LINE L1 5789 7000 -9 5 1103 24 0 0 0 chr12 67918190 67918214 -53339316 + AT_rich Low_complexity Low_complexity 1 24 0 5 1103 235 321 186 12 chr12 67919279 67919623 -53337907 + L2 LINE L2 2155 2558 -861 5 1103 211 98 0 68 chr12 67919694 67919738 -53337792 + A-rich Low_complexity Low_complexity 2 42 0 5 1103 372 293 55 39 chr12 67919901 67920029 -53337501 - ID_B1 SINE B4 -1 223 94 5 1103 605 350 182 11 chr12 67920108 67920563 -53336967 - MER68 LTR ERVL -4 559 27 5 1103 21 36 0 0 chr12 67921537 67921565 -53335965 + AT_rich Low_complexity Low_complexity 1 28 0 5 1103 1165 249 64 21 chr12 67921993 67922322 -53335208 + Lx7 LINE L1 6854 7196 -500 5 1103 333 218 0 93 chr12 67922936 67923022 -53334508 - PB1D10 SINE Alu -30 87 10 5 1103 788 263 5 19 chr12 67925386 67925595 -53331935 - B3 SINE B2 -7 209 4 5 1103 2614 101 55 35 chr12 67926508 67926907 -53330623 - MTB_Mm LTR MaLR 0 407 1 5 1103 22 35 0 0 chr12 67928486 67928515 -53329015 + AT_rich Low_complexity Low_complexity 1 29 0 6 1103 381 149 0 0 chr12 67928601 67928668 -53328862 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1103 310 263 152 0 chr12 67930431 67930530 -53327000 - PB1D10 SINE Alu -1 116 3 6 1103 449 303 0 90 chr12 67930563 67930708 -53326822 - B1_Mur1 SINE Alu -4 145 14 6 1103 213 297 56 56 chr12 67930714 67930821 -53326709 + L2c LINE L2 3249 3355 -32 6 1103 24 32 0 0 chr12 67931046 67931077 -53326453 + AT_rich Low_complexity Low_complexity 1 31 0 6 1103 326 155 32 101 chr12 67931192 67931350 -53326180 + (TTATA)n Simple_repeat Simple_repeat 3 149 0 6 1103 284 0 28 0 chr12 67932317 67932353 -53325177 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 6 1103 335 270 67 0 chr12 67932653 67932742 -53324788 + B3A SINE B2 51 145 -53 6 1103 638 278 109 31 chr12 67932829 67933340 -53324190 - L1MA6 LINE L1 -364 5936 5347 6 1103 219 329 82 0 chr12 67933365 67933450 -53324080 - B1F2 SINE Alu -52 97 6 6 1103 1315 112 16 0 chr12 67934295 67934483 -53323047 + B2_Mm2 SINE B2 1 191 -4 6 1103 807 149 7 78 chr12 67934502 67934655 -53322875 + B1_Mur4 SINE Alu 9 150 0 6 1103 4818 46 5 5 chr12 67935404 67935999 -53321531 - L1Md_F2 LINE L1 -9 6573 5979 6 1103 640 76 74 20 chr12 67937410 67937558 -53319972 + CT-rich Low_complexity Low_complexity 4 159 0 6 1103 290 298 124 36 chr12 67938050 67938436 -53319094 - Charlie2b DNA MER1_type -5 2777 2358 6 1103 272 330 176 14 chr12 67938466 67938899 -53318631 - Charlie2b DNA MER1_type -501 2281 1779 6 1103 249 385 48 32 chr12 67938923 67939175 -53318355 - Charlie2b DNA MER1_type -2485 297 42 6 1103 25 31 0 0 chr12 67940095 67940127 -53317403 + AT_rich Low_complexity Low_complexity 1 32 0 6 1103 1072 87 0 0 chr12 67940387 67940525 -53317005 - B1_Mus1 SINE Alu -8 140 3 6 1103 216 0 0 0 chr12 67942587 67942611 -53314919 + (TGG)n Simple_repeat Simple_repeat 3 26 0 6 1103 378 0 0 0 chr12 67942611 67942653 -53314877 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1103 560 318 111 6 chr12 67943638 67943980 -53313550 + MTEa LTR MaLR 2 379 0 6 1103 391 292 147 52 chr12 67944273 67944580 -53312950 - MER63D DNA AcHobo -649 412 77 6 1103 765 300 19 10 chr12 67944662 67944871 -53312659 + ID_B1 SINE B4 7 217 -7 6 1103 366 91 0 0 chr12 67944898 67944953 -53312577 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1103 191 103 0 25 chr12 67947748 67947788 -53309742 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1103 21 36 0 0 chr12 67948217 67948245 -53309285 + AT_rich Low_complexity Low_complexity 1 28 0 6 1103 485 32 0 16 chr12 67949446 67949510 -53308020 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1103 23 33 0 0 chr12 67950616 67950646 -53306884 + AT_rich Low_complexity Low_complexity 1 30 0 6 1103 302 306 65 0 chr12 67950670 67950840 -53306690 - L1M4 LINE L1 -731 5443 5263 6 1103 223 260 0 0 chr12 67950904 67950954 -53306576 + T-rich Low_complexity Low_complexity 1 50 0 6 1103 1280 63 6 0 chr12 67950954 67951129 -53306401 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 6 1103 632 210 8 0 chr12 67951130 67951249 -53306281 - B1_Mur1 SINE Alu -6 143 24 6 1103 21 0 0 0 chr12 67952192 67952213 -53305317 + AT_rich Low_complexity Low_complexity 1 21 0 6 1103 301 347 33 8 chr12 67952883 67953005 -53304525 + LTR16E1 LTR ERVL 413 537 -1 6 1103 3121 68 17 10 chr12 67953706 67954123 -53303407 + L1Md_F2 LINE L1 6162 6581 -1 6 1103 629 275 2 1 chr12 67955295 67955434 -53302096 - B3 SINE B2 -71 145 6 6 1103 311 213 16 0 chr12 67955831 67955892 -53301638 + ID_B1 SINE B4 121 182 -42 6 1103 541 192 8 8 chr12 67955907 67956038 -53301492 + GA-rich Low_complexity Low_complexity 2 132 0 6 1103 370 331 68 38 chr12 67956111 67956243 -53301287 + RSINE1 SINE B4 13 148 -17 6 1103 372 77 0 0 chr12 67956255 67956307 -53301223 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1103 1105 35 21 0 chr12 67956310 67956455 -53301075 + (TAGA)n Simple_repeat Simple_repeat 1 148 0 6 1103 435 321 43 6 chr12 67957183 67957346 -53300184 - B4A SINE B4 -120 172 4 6 1103 326 295 8 16 chr12 67957590 67957714 -53299816 - L1MA5 LINE L1 -186 6114 5992 6 1103 824 314 73 0 chr12 67957719 67958088 -53299442 + L1MA5 LINE L1 5522 5917 -383 6 1103 2592 38 22 0 chr12 67958362 67958679 -53298851 - L1Md_F2 LINE L1 -619 5963 5640 6 1103 3282 57 2 20 chr12 67958679 67959183 -53298347 + L1Md_F2 LINE L1 6144 6582 0 6 1103 209 226 0 31 chr12 67960252 67960316 -53297214 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1103 571 211 167 0 chr12 67960318 67960474 -53297056 - B3A SINE B2 -16 182 1 6 1103 330 121 0 0 chr12 67961747 67961813 -53295717 + (TCTG)n Simple_repeat Simple_repeat 1 66 0 6 1103 472 291 9 0 chr12 67961814 67961924 -53295606 - RSINE1 SINE B4 -49 116 6 6 1103 341 328 82 79 chr12 67962440 67962758 -53294772 + MLT1C LTR MaLR 77 395 -72 6 1103 180 129 15 61 chr12 67962768 67962834 -53294696 + T-rich Low_complexity Low_complexity 2 64 0 6 1103 242 65 0 61 chr12 67963730 67963779 -53293751 - L1Md_T LINE L1 -7 6575 6530 6 1103 944 208 175 0 chr12 67963776 67963931 -53293599 + Lx9 LINE L1 7321 7518 -126 6 1103 288 0 0 0 chr12 67963931 67963963 -53293567 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1103 944 208 175 0 chr12 67963963 67964076 -53293454 + Lx9 LINE L1 7519 7635 -9 6 1103 288 111 0 0 chr12 67964870 67964915 -53292615 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 6 1103 870 77 0 0 chr12 67964980 67965097 -53292433 + B1_Mus2 SINE Alu 4 120 -27 6 1103 275 0 0 28 chr12 67965113 67965149 -53292381 + (CAAAC)n Simple_repeat Simple_repeat 1 35 0 6 1103 328 55 36 0 chr12 67965150 67965205 -53292325 + (CAA)n Simple_repeat Simple_repeat 1 57 0 6 1103 23 33 0 0 chr12 67966514 67966544 -53290986 + AT_rich Low_complexity Low_complexity 1 30 0 6 1103 373 147 46 0 chr12 67966789 67966898 -53290632 + (TA)n Simple_repeat Simple_repeat 1 114 0 6 1103 217 319 48 79 chr12 67966943 67967069 -53290461 - MIR SINE MIR -128 134 13 6 1103 180 0 0 0 chr12 67967634 67967654 -53289876 + (TAAAAA)n Simple_repeat Simple_repeat 4 23 0 6 1103 22 0 0 0 chr12 67968010 67968032 -53289498 + AT_rich Low_complexity Low_complexity 1 22 0 6 1103 26 0 0 0 chr12 67968241 67968267 -53289263 + AT_rich Low_complexity Low_complexity 1 26 0 6 1103 250 212 30 0 chr12 67968456 67968522 -53289008 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 6 1103 438 20 0 0 chr12 67968701 67968752 -53288778 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1103 29 90 0 0 chr12 67968942 67969020 -53288510 + AT_rich Low_complexity Low_complexity 1 78 0 6 1103 192 40 0 0 chr12 67969476 67969501 -53288029 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1103 519 60 0 0 chr12 67969501 67969567 -53287963 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 1103 879 276 14 0 chr12 67971500 67971710 -53285820 + B3 SINE B2 1 213 -3 6 1103 369 0 0 0 chr12 67971923 67971964 -53285566 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1103 22 0 0 0 chr12 67972274 67972296 -53285234 + AT_rich Low_complexity Low_complexity 1 22 0 6 1103 187 324 42 0 chr12 67973150 67973221 -53284309 - MIR3 SINE MIR -10 198 125 6 1103 613 106 9 9 chr12 67973284 67973389 -53284141 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 6 1103 818 257 16 26 chr12 67973885 67974077 -53283453 + B3A SINE B2 3 192 -6 6 1103 333 0 0 0 chr12 67974087 67974124 -53283406 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1103 432 0 0 0 chr12 67976045 67976093 -53281437 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1103 270 179 15 15 chr12 67976095 67976163 -53281367 - L1_Rod LINE L1 -54 5793 5726 6 1103 3999 47 6 2 chr12 67977333 67977829 -53279701 - L1Md_F3 LINE L1 -14 6570 6073 6 1103 341 100 0 41 chr12 67978165 67978238 -53279292 + (A)n Simple_repeat Simple_repeat 1 70 0 6 1103 728 121 9 0 chr12 67979533 67979649 -53277881 - L1_Mus2 LINE L1 -551 5332 5216 6 1103 7007 83 35 3 chr12 67979648 67980828 -53276702 + L1_Mus2 LINE L1 5335 6565 -1 6 1103 31 26 0 0 chr12 67980940 67980978 -53276552 + AT_rich Low_complexity Low_complexity 1 38 0 6 1103 24 0 0 0 chr12 67981013 67981037 -53276493 + AT_rich Low_complexity Low_complexity 1 24 0 6 1103 183 42 0 0 chr12 67981713 67981737 -53275793 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1103 488 300 16 32 chr12 67981737 67981923 -53275607 + B3A SINE B2 1 183 -15 6 1103 195 309 95 0 chr12 67983871 67983955 -53273575 + MIR SINE MIR 45 136 -126 6 1103 237 215 108 0 chr12 67983985 67984050 -53273480 + RMER15 LTR ERVL 45 116 -459 6 1103 445 304 85 24 chr12 67984092 67984304 -53273226 + RMER15 LTR ERVL 306 530 -45 6 1103 460 351 30 0 chr12 67984726 67984860 -53272670 + B3A SINE B2 2 139 -59 6 1103 489 34 0 0 chr12 67984884 67984943 -53272587 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1103 804 30 0 0 chr12 67984943 67985041 -53272489 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 1103 951 166 97 13 chr12 67985344 67985570 -53271960 + Lx2B LINE L1 5980 6224 -776 6 1103 189 0 0 0 chr12 67986342 67986363 -53271167 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 1103 1203 132 0 5 chr12 67986603 67986793 -53270737 + B2_Mm2 SINE B2 2 190 -5 6 1103 23 0 0 0 chr12 67987064 67987087 -53270443 + AT_rich Low_complexity Low_complexity 1 23 0 6 1103 408 67 0 0 chr12 67987987 67988047 -53269483 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1103 231 232 18 0 chr12 67988047 67988103 -53269427 - Lx9 LINE L1 -176 7468 7412 6 1103 2727 76 26 3 chr12 67988315 67988696 -53268834 - L1_Mus3 LINE L1 -1 6637 6248 6 1103 315 289 0 11 chr12 67988848 67988939 -53268591 + T-rich Low_complexity Low_complexity 1 90 0 6 1103 233 197 0 57 chr12 67989185 67989255 -53268275 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 6 1103 25 31 0 0 chr12 67990588 67990620 -53266910 + AT_rich Low_complexity Low_complexity 1 32 0 6 1103 228 136 85 0 chr12 67991120 67991179 -53266351 - L1_Rod LINE L1 -54 5793 5730 7 1103 197 308 108 0 chr12 67991875 67991940 -53265590 - L2c LINE L2 -53 3334 3263 7 1103 462 308 8 8 chr12 67991984 67992118 -53265412 + Lx8 LINE L1 7024 7157 -316 7 1103 555 288 14 70 chr12 67992342 67992555 -53264975 - MTE2a LTR MaLR 0 379 179 7 1103 466 152 19 127 chr12 67992597 67992755 -53264775 - RMER4B LTR ERVK -236 349 209 7 1103 426 139 25 0 chr12 67992750 67992829 -53264701 - RMER4B LTR ERVK -109 476 396 7 1103 285 29 0 0 chr12 67992910 67992944 -53264586 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1103 450 0 0 0 chr12 67992944 67992993 -53264537 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1103 304 348 152 12 chr12 67993551 67993801 -53263729 + B4A SINE B4 1 285 -7 7 1103 384 97 0 0 chr12 67993887 67993949 -53263581 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1103 277 297 59 45 chr12 67994936 67995076 -53262454 - B1F SINE Alu 0 149 2 7 1103 245 313 70 0 chr12 67995391 67995506 -53262024 - LTR33 LTR ERVL 0 515 393 7 1103 198 0 0 0 chr12 67995672 67995694 -53261836 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1103 280 164 30 0 chr12 67995861 67995928 -53261602 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1103 2460 248 55 5 chr12 67996835 67997470 -53260060 + Lx7 LINE L1 6754 7420 -276 7 1103 270 290 192 22 chr12 67997602 67997797 -53259733 - B4A SINE B4 -59 233 7 7 1103 233 29 0 29 chr12 67998384 67998419 -53259111 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1103 22 0 0 0 chr12 67999436 67999458 -53258072 + AT_rich Low_complexity Low_complexity 1 22 0 7 1103 27 49 0 0 chr12 67999826 67999867 -53257663 + AT_rich Low_complexity Low_complexity 1 41 0 7 1103 297 0 0 0 chr12 67999923 67999956 -53257574 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1103 471 18 0 0 chr12 68000844 68000900 -53256630 + (CAGAGA)n Simple_repeat Simple_repeat 4 59 0 1 1103 1228 91 80 0 chr12 68001126 68001301 -53256229 + B2_Mm2 SINE B2 1 189 -6 2 1103 21 36 0 0 chr12 68001338 68001366 -53256164 + AT_rich Low_complexity Low_complexity 1 28 0 3 1103 3817 143 75 23 chr12 68001685 68002374 -53255156 + Lx3C LINE L1 6250 6974 -2 4 1103 709 276 61 0 chr12 68003634 68003830 -53253700 + B3 SINE B2 4 211 -5 5 1103 25 65 0 0 chr12 68004110 68004156 -53253374 + AT_rich Low_complexity Low_complexity 1 46 0 6 1103 297 151 0 0 chr12 68004686 68004739 -53252791 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1103 234 204 20 0 chr12 68004739 68004788 -53252742 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 8 1103 396 0 0 0 chr12 68005376 68005420 -53252110 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1103 243 0 0 0 chr12 68005420 68005446 -53252084 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1103 192 77 0 0 chr12 68005544 68005570 -53251960 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1 1103 1220 229 216 6 chr12 68005869 68006219 -53251311 - Lx2B LINE L1 -4 6996 6573 1 1103 1316 196 0 0 chr12 68006216 68006446 -53251084 + L1_Mur1 LINE L1 5405 5634 -252 1 1103 1481 308 111 28 chr12 68006458 68007207 -53250323 - Lx8 LINE L1 -144 7329 6519 1 1103 226 269 104 48 chr12 68007220 68007345 -53250185 - Lx8 LINE L1 -1291 6182 6051 1 1103 537 16 0 0 chr12 68007353 68007415 -53250115 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1103 517 152 0 52 chr12 68007415 68007426 -53250104 - B1_Mm SINE Alu -3 144 137 1 1103 207 0 0 0 chr12 68007426 68007449 -53250081 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1103 517 152 0 52 chr12 68007449 68007534 -53249996 - B1_Mm SINE Alu -11 136 53 1 1103 485 311 92 68 chr12 68007538 68007581 -53249949 - Lx8 LINE L1 -99 5748 5713 1 1103 1082 78 48 6 chr12 68007581 68007749 -53249781 - L1_Mus3 LINE L1 -6 6632 6458 1 1103 541 311 92 68 chr12 68007749 68008105 -53249425 - Lx8 LINE L1 -135 5712 5339 1 1103 563 303 0 0 chr12 68008127 68008272 -53249258 + Lx8 LINE L1 6390 6534 -939 1 1103 1083 339 76 20 chr12 68008317 68008761 -53248769 + Lx8 LINE L1 6660 7130 -343 1 1103 234 0 0 0 chr12 68008761 68008787 -53248743 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1103 1083 339 76 20 chr12 68008787 68008990 -53248540 + Lx8 LINE L1 7131 7343 -130 1 1103 2778 123 39 5 chr12 68009084 68009526 -53248004 - Lx3A LINE L1 -1 6980 6524 2 1103 276 53 0 0 chr12 68009537 68009575 -53247955 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1103 354 426 33 26 chr12 68009665 68009817 -53247713 - LTR33 LTR ERVL -232 283 131 2 1103 672 159 0 9 chr12 68009869 68009983 -53247547 + B1_Mus1 SINE Alu 36 148 0 2 1103 228 35 0 0 chr12 68009986 68010015 -53247515 + (CACAA)n Simple_repeat Simple_repeat 4 32 0 2 1103 253 295 66 0 chr12 68010251 68010312 -53247218 - B4 SINE B4 -140 152 88 2 1103 1209 98 0 0 chr12 68010312 68010486 -53247044 + (TTCTC)n Simple_repeat Simple_repeat 3 176 0 2 1103 513 84 0 0 chr12 68010491 68010562 -53246968 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 2 1103 3520 187 28 6 chr12 68010672 68011346 -53246184 - Lx2B LINE L1 -639 6361 5673 2 1103 182 208 21 0 chr12 68011409 68011457 -53246073 + CT-rich Low_complexity Low_complexity 2 50 0 3 1103 696 123 22 39 chr12 68011603 68011781 -53245749 + CT-rich Low_complexity Low_complexity 2 176 0 3 1103 625 140 33 33 chr12 68011801 68012293 -53245237 + CT-rich Low_complexity Low_complexity 1 492 0 3 1103 259 288 14 0 chr12 68012304 68012377 -53245153 + CT-rich Low_complexity Low_complexity 2 75 0 3 1103 996 303 37 14 chr12 68013863 68014218 -53243312 + Lx8 LINE L1 6892 7254 -219 3 1103 2662 21 27 3 chr12 68018504 68018835 -53238695 + L1Md_F3 LINE L1 6231 6569 -15 3 1103 272 363 77 84 chr12 68019463 68019773 -53237757 + MamRep605 Unknown Unknown 429 736 -140 3 1103 4430 214 34 11 chr12 68019997 68020903 -53236627 + Lx4B LINE L1 6112 7038 -20 3 1103 192 40 0 0 chr12 68020903 68020928 -53236602 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3 1103 23 78 0 0 chr12 68020960 68021011 -53236519 + AT_rich Low_complexity Low_complexity 1 51 0 3 1103 406 309 22 0 chr12 68021238 68021377 -53236153 + B1F2 SINE Alu 3 144 -5 3 1103 789 67 0 0 chr12 68021724 68021828 -53235702 + (CATATA)n Simple_repeat Simple_repeat 2 105 0 3 137 33297 105 34 12 chr12 68023171 68029576 -53227954 - L1Md_F2 LINE L1 -14 6568 31 4 1104 2352 120 0 0 chr12 68029716 68030066 -53227464 - Lx3A LINE L1 -812 5074 4725 4 1104 232 132 0 0 chr12 68030060 68030098 -53227432 + Lx3A LINE L1 5078 5115 -771 4 1104 1045 122 0 0 chr12 68030099 68030246 -53227284 + B1_Mus1 SINE Alu 2 148 0 4 1104 8456 100 52 31 chr12 68030257 68032117 -53225413 + Lx3A LINE L1 5101 6978 -3 4 1104 23 33 0 0 chr12 68032247 68032277 -53225253 + AT_rich Low_complexity Low_complexity 1 30 0 4 1104 1802 160 45 0 chr12 68032355 68032668 -53224862 + ORR1A2 LTR MaLR 1 327 0 4 1104 2341 62 0 0 chr12 68033196 68033487 -53224043 - L1Md_F2 LINE L1 -111 6471 6181 4 1104 21 36 0 0 chr12 68033702 68033730 -53223800 + AT_rich Low_complexity Low_complexity 1 28 0 4 1104 21 0 0 0 chr12 68033842 68033863 -53223667 + AT_rich Low_complexity Low_complexity 1 21 0 4 1104 419 327 73 15 chr12 68034062 68034267 -53223263 + MLT1B LTR MaLR 1 217 -173 4 1104 989 78 48 28 chr12 68034382 68034393 -53223137 - B1_Mus1 SINE Alu 0 148 141 4 1104 504 0 0 0 chr12 68034393 68034449 -53223081 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1104 989 78 48 28 chr12 68034449 68034582 -53222948 - B1_Mus1 SINE Alu -8 140 1 4 1104 1167 314 111 20 chr12 68034632 68035854 -53221676 + L1M3 LINE L1 3610 4943 -1197 5 1104 378 0 0 0 chr12 68035854 68035896 -53221634 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1104 183 38 93 19 chr12 68035903 68035957 -53221573 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 1104 231 276 58 33 chr12 68036466 68036586 -53220944 + L1M3 LINE L1 5789 5911 -401 5 1104 213 240 0 0 chr12 68037469 68037519 -53220011 + A-rich Low_complexity Low_complexity 1 50 0 5 1104 460 298 117 22 chr12 68037601 68037824 -53219706 + B4A SINE B4 6 249 -43 5 1104 21 100 0 0 chr12 68037962 68038032 -53219498 + AT_rich Low_complexity Low_complexity 1 70 0 5 1104 289 348 8 17 chr12 68040206 68040326 -53217204 - L3 LINE CR1 -381 4108 3990 5 1104 414 0 0 0 chr12 68041414 68041460 -53216070 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 5 1104 736 35 186 0 chr12 68041462 68041575 -53215955 - B1_Mus2 SINE Alu -5 142 9 5 1104 255 241 16 79 chr12 68041640 68041703 -53215827 + ID4_ SINE ID 5 63 -20 6 1104 357 248 186 60 chr12 68041756 68041923 -53215607 + Lx9 LINE L1 7133 7320 -324 6 1104 468 0 0 0 chr12 68041936 68041988 -53215542 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1104 2035 275 29 15 chr12 68042110 68042760 -53214770 + Lx7 LINE L1 6766 7424 -272 6 1104 276 263 0 0 chr12 68042820 68042896 -53214634 + Lx7 LINE L1 7606 7681 -15 6 1104 1618 105 43 20 chr12 68043306 68043559 -53213971 + RLTR27 LTR ERVK 51 309 0 6 1104 352 40 24 73 chr12 68044044 68044126 -53213404 + (TTTTTG)n Simple_repeat Simple_repeat 3 80 0 6 1104 2351 58 4 3 chr12 68044242 68044562 -53212968 + L1_Mm LINE L1 5124 5466 -2416 6 1104 21 0 0 0 chr12 68045468 68045489 -53212041 + AT_rich Low_complexity Low_complexity 1 21 0 6 1104 7559 6 1 0 chr12 68045509 68046353 -53211177 - L1Md_T LINE L1 0 6582 5738 6 1104 12544 25 0 0 chr12 68046353 68047821 -53209709 + L1Md_T LINE L1 4299 5766 -117 6 1104 1183 61 0 6 chr12 68048881 68049046 -53208484 + L1Md_F2 LINE L1 6407 6570 -12 6 1104 243 0 0 0 chr12 68049392 68049419 -53208111 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1104 21 36 0 0 chr12 68049975 68050003 -53207527 + AT_rich Low_complexity Low_complexity 1 28 0 7 1104 539 29 14 0 chr12 68050194 68050263 -53207267 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 7 1104 249 321 22 14 chr12 68050509 68050648 -53206882 + L1M4 LINE L1 5647 5786 -392 7 1104 458 293 67 8 chr12 68051064 68051198 -53206332 + B1F2 SINE Alu 8 149 0 7 1104 242 274 0 64 chr12 68051669 68051747 -53205783 + ID_B1 SINE B4 145 217 -7 7 1104 225 395 26 0 chr12 68051863 68051977 -53205553 + MIRb SINE MIR 11 127 -141 7 1104 1186 73 50 16 chr12 68052499 68052681 -53204849 + B2_Mm2 SINE B2 2 189 -6 7 1104 992 121 0 0 chr12 68052684 68052825 -53204705 + B1_Mus1 SINE Alu 2 142 -6 7 1104 387 0 0 0 chr12 68052827 68052870 -53204660 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 7 1104 342 0 0 0 chr12 68053088 68053126 -53204404 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1104 396 0 0 0 chr12 68053127 68053171 -53204359 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1104 542 328 32 11 chr12 68053254 68053442 -53204088 - B4A SINE B4 -68 224 33 8 1104 263 354 0 26 chr12 68054070 68054186 -53203344 - MLT1A1 LTR MaLR -4 404 292 8 1104 763 311 19 14 chr12 68056069 68056284 -53201246 - B4A SINE B4 -53 239 24 8 1104 203 189 0 0 chr12 68056880 68056917 -53200613 + A-rich Low_complexity Low_complexity 1 37 0 8 1104 459 0 0 0 chr12 68057208 68057259 -53200271 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1104 222 282 99 0 chr12 68058297 68058368 -53199162 + B1F SINE Alu 21 98 -51 8 1104 898 159 195 5 chr12 68058543 68058733 -53198797 - URR1A DNA MER1_type 0 226 1 8 1104 5753 2 0 0 chr12 68058822 68059531 -53197999 - L1Md_A LINE L1 -631 5951 5243 8 1104 5436 2 33 0 chr12 68059531 68060176 -53197354 + L1Md_A LINE L1 5951 6582 0 8 1104 25 31 0 0 chr12 68062152 68062184 -53195346 + AT_rich Low_complexity Low_complexity 1 32 0 9 1104 435 301 33 28 chr12 68063176 68063357 -53194173 - B3A SINE B2 -16 182 1 9 1104 348 349 45 52 chr12 68063875 68064165 -53193365 + B4A SINE B4 4 291 -1 9 1104 227 267 0 0 chr12 68064282 68064327 -53193203 + (TTG)n Simple_repeat Simple_repeat 1 45 0 9 1104 1863 165 45 0 chr12 68064328 68064661 -53192869 - Lx3C LINE L1 -10 6966 6619 9 1104 29 60 0 0 chr12 68064683 68064733 -53192797 + AT_rich Low_complexity Low_complexity 1 50 0 9 1104 21 0 0 0 chr12 68065369 68065390 -53192140 + AT_rich Low_complexity Low_complexity 1 21 0 9 1104 205 192 38 13 chr12 68065862 68065941 -53191589 + (TA)n Simple_repeat Simple_repeat 2 82 0 9 1104 374 298 121 0 chr12 68066840 68066964 -53190566 - MTD LTR MaLR 0 419 281 9 1104 558 329 35 39 chr12 68067036 68067292 -53190238 - MTD LTR MaLR -155 264 10 9 1104 2831 197 75 14 chr12 68067515 68068395 -53189135 - L1VL4 LINE L1 -4057 1829 869 9 1104 4966 215 10 25 chr12 68068419 68069525 -53188005 + Lx2B LINE L1 5906 6994 -6 1 1104 302 231 0 0 chr12 68069631 68069696 -53187834 + B3 SINE B2 42 106 -110 1 1104 542 83 3 1 chr12 68069752 68069826 -53187704 - Lx3_Mus LINE L1 -263 5893 5787 1 1104 6244 107 10 0 chr12 68069826 68070711 -53186819 + Lx3_Mus LINE L1 6108 7001 -8 1 1104 475 159 0 90 chr12 68070726 68070837 -53186693 - B2_Mm2 SINE B2 -69 124 26 1 1104 216 361 27 14 chr12 68072264 68072337 -53185193 - ID SINE ID -149 75 2 1 1104 242 353 6 0 chr12 68072346 68072441 -53185089 - B1F SINE Alu -1 148 52 1 1104 203 61 0 29 chr12 68073248 68073282 -53184248 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1104 21 57 0 0 chr12 68074042 68074077 -53183453 + AT_rich Low_complexity Low_complexity 1 35 0 1 1104 237 191 14 14 chr12 68074704 68074773 -53182757 + A-rich Low_complexity Low_complexity 6 74 0 1 1104 1151 222 7 54 chr12 68074875 68075151 -53182379 - RMER6C LTR ERVK -10 680 418 1 1104 438 250 0 20 chr12 68076378 68076480 -53181050 + B4A SINE B4 171 270 -22 1 1104 564 15 0 0 chr12 68076504 68076569 -53180961 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1104 213 39 0 0 chr12 68076569 68076594 -53180936 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1104 340 294 69 31 chr12 68077038 68077168 -53180362 + ID_B1 SINE B4 88 222 -2 1 1104 23 33 0 0 chr12 68080940 68080970 -53176560 + AT_rich Low_complexity Low_complexity 1 30 0 1 1104 328 191 11 11 chr12 68081755 68081845 -53175685 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 1104 596 302 31 31 chr12 68081852 68082047 -53175483 - B3A SINE B2 -21 195 1 1 1104 898 181 126 0 chr12 68083247 68083446 -53174084 - URR1A DNA MER1_type -2 224 1 1 1104 279 0 0 0 chr12 68083488 68083519 -53174011 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 1104 2917 131 46 2 chr12 68083521 68083980 -53173550 - Lx3A LINE L1 -64 6917 6439 1 1104 23 0 0 0 chr12 68084053 68084076 -53173454 + AT_rich Low_complexity Low_complexity 1 23 0 1 1104 937 116 0 0 chr12 68084236 68084365 -53173165 + B1_Mm SINE Alu 2 130 -17 1 1104 486 0 0 0 chr12 68084373 68084427 -53173103 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1104 368 216 29 19 chr12 68084458 68084562 -53172968 + Lx2B LINE L1 6886 6990 -10 1 1104 210 71 0 0 chr12 68084926 68084954 -53172576 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1104 677 109 72 0 chr12 68085187 68085325 -53172205 + CT-rich Low_complexity Low_complexity 3 150 0 1 1104 936 343 63 42 chr12 68085662 68086283 -53171247 - MLT1A0-int LTR MaLR -1100 635 2 1 1104 562 346 57 45 chr12 68086286 68086640 -53170890 - MLT1A0 LTR MaLR -3 362 5 1 1104 23 33 0 0 chr12 68086657 68086687 -53170843 + AT_rich Low_complexity Low_complexity 1 30 0 1 1104 1153 322 83 31 chr12 68087460 68088617 -53168913 + L1M2 LINE L1 4172 5388 -755 1 1104 797 160 0 0 chr12 68088735 68088854 -53168676 - Lx4A LINE L1 -224 6834 6716 1 1104 2134 82 4 0 chr12 68088854 68089135 -53168395 + L1_Mus2 LINE L1 6285 6566 0 1 1104 1761 158 45 23 chr12 68089168 68089478 -53168052 + ORR1B1 LTR MaLR 76 392 -2 1 1104 599 197 67 13 chr12 68089507 68089656 -53167874 + Lx4A LINE L1 6901 7057 -1 1 1104 533 321 34 41 chr12 68089677 68090112 -53167418 + Lx7 LINE L1 5434 5909 -1787 1 1104 220 287 0 0 chr12 68090112 68090213 -53167317 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 1104 513 0 0 0 chr12 68090590 68090647 -53166883 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1104 2667 98 3 0 chr12 68090657 68091033 -53166497 - Lx LINE L1 -483 6171 5795 1 1104 510 17 0 0 chr12 68091127 68091186 -53166344 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1104 21 71 0 0 chr12 68091467 68091509 -53166021 + AT_rich Low_complexity Low_complexity 1 42 0 1 1104 345 106 0 15 chr12 68091557 68091605 -53165925 + L1Md_F2 LINE L1 6511 6558 -24 1 1104 432 0 0 0 chr12 68091605 68091653 -53165877 + (TAA)n Simple_repeat Simple_repeat 3 50 0 1 1104 345 106 0 15 chr12 68091653 68091671 -53165859 + L1Md_F2 LINE L1 6559 6575 -7 1 1104 35 63 0 0 chr12 68092970 68093033 -53164497 + AT_rich Low_complexity Low_complexity 1 63 0 1 1104 189 0 0 0 chr12 68093158 68093179 -53164351 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1104 201 146 0 0 chr12 68093179 68093227 -53164303 + (TTTTTA)n Simple_repeat Simple_repeat 4 51 0 1 1104 279 161 0 0 chr12 68093227 68093283 -53164247 + T-rich Low_complexity Low_complexity 108 163 0 1 1104 3010 100 11 26 chr12 68093287 68093751 -53163779 + Lx LINE L1 6198 6654 0 1 1104 1800 226 48 34 chr12 68094052 68094239 -53163291 + MTC LTR MaLR 4 204 -217 1 1104 554 129 8 8 chr12 68094239 68094356 -53163174 + L1_Mus4 LINE L1 6520 6636 0 1 1104 1800 226 48 34 chr12 68094356 68094580 -53162950 + MTC LTR MaLR 205 421 0 1 1104 691 151 31 0 chr12 68094656 68094815 -53162715 + (TA)n Simple_repeat Simple_repeat 1 164 0 1 1104 3135 198 99 32 chr12 68095422 68096151 -53161379 - L1_Mur2 LINE L1 -118 5759 4982 1 1104 828 143 0 0 chr12 68096151 68096291 -53161239 + (TTTA)n Simple_repeat Simple_repeat 2 141 0 1 1104 9804 100 17 14 chr12 68096306 68098014 -53159516 - Lx3_Mus LINE L1 0 7009 5291 1 1104 671 119 0 23 chr12 68098049 68098178 -53159352 - L1Md_F2 LINE L1 -1 6581 6456 1 1104 7355 84 8 12 chr12 68098225 68099268 -53158262 + L1_Mur1 LINE L1 4209 5246 -640 1 1104 1544 193 47 8 chr12 68099266 68099626 -53157904 - Lx3_Mus LINE L1 -881 4996 4623 1 1104 5649 214 39 27 chr12 68099636 68100933 -53156597 + Lx5 LINE L1 5735 7047 -3 1 1104 261 109 0 0 chr12 68102144 68102190 -53155340 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 1 1104 373 338 84 41 chr12 68102229 68102337 -53155193 - L1MC4a LINE L1 -47 7948 7833 1 1104 195 42 0 0 chr12 68102337 68102361 -53155169 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1104 396 314 57 33 chr12 68102361 68102666 -53154864 - L1MC4a LINE L1 -163 7832 7456 1 1104 916 288 118 25 chr12 68102738 68103101 -53154429 - MTD LTR MaLR -15 404 8 1 1104 294 282 70 93 chr12 68103161 68103333 -53154197 - MLT1D LTR MaLR -9 496 329 1 1104 448 319 115 36 chr12 68103552 68103921 -53153609 - L1MC4a LINE L1 -637 7245 6856 1 1104 234 254 113 95 chr12 68105010 68105232 -53152298 + Tigger7 DNA MER2_type 2118 2343 -148 1 1104 803 181 0 0 chr12 68105247 68105385 -53152145 - B1_Mur4 SINE Alu -7 143 6 1 1104 294 29 0 0 chr12 68106599 68106634 -53150896 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1104 255 122 0 0 chr12 68106647 68106696 -53150834 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1104 186 43 0 0 chr12 68106875 68106898 -53150632 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1104 302 67 22 0 chr12 68106923 68106968 -53150562 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1 1104 504 72 0 0 chr12 68107251 68107320 -53150210 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1104 335 94 31 0 chr12 68109168 68109232 -53148298 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 1 1104 188 343 111 7 chr12 68111049 68111193 -53146337 + MIRb SINE MIR 109 267 -1 1 1104 324 0 0 0 chr12 68112836 68112872 -53144658 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 1104 1158 102 0 0 chr12 68113522 68113749 -53143781 + (TG)n Simple_repeat Simple_repeat 1 227 0 1 1104 36 77 0 0 chr12 68114701 68114779 -53142751 + AT_rich Low_complexity Low_complexity 1 78 0 1 1104 23 0 0 0 chr12 68115860 68115883 -53141647 + AT_rich Low_complexity Low_complexity 1 23 0 1 1104 455 153 10 0 chr12 68115993 68116091 -53141439 + (CA)n Simple_repeat Simple_repeat 1 99 0 1 1104 2023 167 32 24 chr12 68117385 68117783 -53139747 + Lx4A LINE L1 6621 7026 -32 1 1104 417 374 51 45 chr12 68119334 68119667 -53137863 + MER21B LTR ERV1 500 834 -29 1 1104 26 0 0 0 chr12 68120943 68120969 -53136561 + AT_rich Low_complexity Low_complexity 1 26 0 1 1104 883 188 0 6 chr12 68120993 68121159 -53136371 + Lx7 LINE L1 6212 6376 -1320 1 1104 1274 181 42 0 chr12 68121162 68121399 -53136131 + Lx6 LINE L1 6497 6743 -717 1 1104 427 241 92 25 chr12 68121399 68121518 -53136012 + B1_Mus1 SINE Alu 1 127 -21 1 1104 2194 218 57 109 chr12 68121526 68122261 -53135269 + Lx7 LINE L1 6768 7464 -232 1 1104 22 0 0 0 chr12 68123700 68123722 -53133808 + AT_rich Low_complexity Low_complexity 1 22 0 1 1104 1207 323 105 34 chr12 68125882 68127658 -53129872 + L1_Mur3 LINE L1 3711 5612 -268 1 1104 22 0 0 0 chr12 68127840 68127862 -53129668 + AT_rich Low_complexity Low_complexity 1 22 0 1 1104 316 250 123 56 chr12 68128073 68128268 -53129262 - L1M3 LINE L1 -895 5245 5038 1 1104 317 82 20 0 chr12 68129038 68129087 -53128443 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1104 920 297 50 94 chr12 68129203 68129786 -53127744 + Lx8 LINE L1 6912 7468 -5 1 1104 219 69 0 0 chr12 68130587 68130616 -53126914 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1104 323 310 60 37 chr12 68132086 68132220 -53125310 + ID_B1 SINE B4 77 213 -11 1 1104 216 0 0 0 chr12 68133135 68133159 -53124371 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1104 2038 69 4 4 chr12 68133233 68133508 -53124022 + L1_Mus2 LINE L1 6292 6566 0 1 1104 416 19 19 0 chr12 68134961 68135014 -53122516 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1104 22 0 0 0 chr12 68137092 68137114 -53120416 + GC_rich Low_complexity Low_complexity 1 22 0 1 1104 23 68 0 0 chr12 68137640 68137684 -53119846 + AT_rich Low_complexity Low_complexity 1 44 0 1 1104 24 0 0 0 chr12 68138154 68138178 -53119352 + AT_rich Low_complexity Low_complexity 1 24 0 1 1104 1314 72 0 0 chr12 68138685 68139036 -53118494 + (GGGAA)n Simple_repeat Simple_repeat 1 351 0 1 1104 251 301 24 24 chr12 68139285 68139370 -53118160 - B1F SINE Alu -64 85 1 1 1104 201 39 0 0 chr12 68140493 68140519 -53117011 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1104 22 0 0 0 chr12 68141264 68141286 -53116244 + AT_rich Low_complexity Low_complexity 1 22 0 1 1104 1357 102 0 5 chr12 68141419 68141607 -53115923 + B2_Mm2 SINE B2 1 187 -8 1 1104 405 313 76 15 chr12 68141802 68142000 -53115530 + B3 SINE B2 1 210 -6 2 1104 387 0 0 0 chr12 68142004 68142047 -53115483 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2 1104 2663 170 26 22 chr12 68142095 68142600 -53114930 + Lx4A LINE L1 6550 7056 -2 2 1104 28 48 0 0 chr12 68142685 68142727 -53114803 + AT_rich Low_complexity Low_complexity 1 42 0 2 1104 228 328 122 43 chr12 68144202 68144390 -53113140 + MIRc SINE MIR 3 205 -63 2 1104 24 0 0 0 chr12 68144391 68144415 -53113115 + AT_rich Low_complexity Low_complexity 1 24 0 2 1104 802 278 99 0 chr12 68145186 68145406 -53112124 + B4 SINE B4 2 243 -49 2 1104 2675 167 40 2 chr12 68145406 68145911 -53111619 + RLTR28 LTR ERVL 1 524 0 2 1104 195 100 0 0 chr12 68145954 68145984 -53111546 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 2 1104 21 36 0 0 chr12 68147438 68147466 -53110064 + AT_rich Low_complexity Low_complexity 1 28 0 2 1104 875 201 103 0 chr12 68147634 68147928 -53109602 - Lx LINE L1 -1 6999 6478 2 1104 259 250 0 29 chr12 68148051 68148121 -53109409 + GA-rich Low_complexity Low_complexity 4 71 0 2 1104 299 146 0 0 chr12 68148129 68148177 -53109353 + ORR1C2 LTR MaLR 337 384 0 2 1104 1917 55 93 0 chr12 68148306 68148563 -53108967 - L1Md_F2 LINE L1 -14 6568 6288 2 1104 1440 128 13 0 chr12 68148589 68148823 -53108707 + L1_Mm LINE L1 3804 4040 -1843 2 1104 257 198 11 0 chr12 68149038 68149129 -53108401 + GA-rich Low_complexity Low_complexity 2 93 0 2 1104 25 95 0 0 chr12 68149201 68149275 -53108255 + AT_rich Low_complexity Low_complexity 1 74 0 2 1104 185 0 0 39 chr12 68150827 68150853 -53106677 + (TTTTTA)n Simple_repeat Simple_repeat 1 25 0 2 1104 413 278 98 12 chr12 68152237 68152401 -53105129 - Lx8 LINE L1 -620 6853 6676 2 1104 409 81 13 26 chr12 68152411 68152487 -53105043 + (TTTTA)n Simple_repeat Simple_repeat 3 77 0 2 1104 939 233 40 0 chr12 68152489 68152691 -53104839 - B3 SINE B2 0 216 7 2 1104 370 177 30 40 chr12 68152961 68153061 -53104469 - Lx9 LINE L1 -15 7629 7531 2 1104 830 10 10 0 chr12 68153090 68153189 -53104341 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1104 416 145 0 0 chr12 68153203 68153272 -53104258 - Lx9 LINE L1 -266 7378 7310 2 1104 1273 109 0 21 chr12 68155320 68155508 -53102022 - B2_Mm2 SINE B2 -7 188 5 2 1104 22 35 0 0 chr12 68156531 68156560 -53100970 + AT_rich Low_complexity Low_complexity 1 29 0 2 1104 773 92 0 0 chr12 68156845 68156954 -53100576 + B1_Mm SINE Alu 31 139 -8 2 1104 279 0 0 0 chr12 68156954 68156985 -53100545 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1104 549 44 0 0 chr12 68156985 68157052 -53100478 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 1104 22 0 0 0 chr12 68157310 68157332 -53100198 + AT_rich Low_complexity Low_complexity 1 22 0 2 17 250 355 18 18 chr12 68157347 68157456 -53100074 + PB1D10 SINE Alu 1 109 -8 2 1105 591 272 55 58 chr12 68157677 68158066 -53099464 + MLT1B LTR MaLR 27 467 0 2 1105 383 202 0 9 chr12 68158408 68158518 -53099012 + (TG)n Simple_repeat Simple_repeat 1 109 0 2 1105 1844 203 14 14 chr12 68160158 68160943 -53096587 + GSAT_MM Satellite Satellite 1 785 0 2 1105 1784 47 0 0 chr12 68161598 68161811 -53095719 - L1Md_F2 LINE L1 -341 6241 6029 2 1105 2090 105 15 15 chr12 68161811 68162141 -53095389 + IAPEY_LTR LTR ERVK 54 383 -2 2 1105 2138 53 0 0 chr12 68162153 68162419 -53095111 - L1Md_F2 LINE L1 -549 6033 5768 2 1105 1753 64 4 8 chr12 68162419 68162656 -53094874 + L1Md_F2 LINE L1 6335 6570 -12 2 1105 247 335 170 16 chr12 68165738 68165932 -53091598 + L2 LINE L2 2849 3072 -347 2 1105 6099 73 29 2 chr12 68167798 68168663 -53088867 + L1_Mus3 LINE L1 5790 6638 0 2 1105 198 0 0 0 chr12 68169243 68169265 -53088265 + (CTA)n Simple_repeat Simple_repeat 1 22 0 2 1105 240 35 0 0 chr12 68169709 68169738 -53087792 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1105 453 81 0 0 chr12 68169855 68169917 -53087613 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1105 1741 228 40 32 chr12 68171073 68171603 -53085927 + Lx9 LINE L1 7093 7626 -18 2 1105 657 266 79 28 chr12 68173973 68174151 -53083379 + B3A SINE B2 1 187 -11 2 1105 189 0 0 0 chr12 68175232 68175253 -53082277 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2 1105 368 335 54 39 chr12 68176203 68176600 -53080930 + L1MA4 LINE L1 5172 5561 -623 2 1105 250 181 14 27 chr12 68176634 68176708 -53080822 + L1MA4 LINE L1 5541 5613 -678 2 1105 285 51 0 0 chr12 68176739 68176778 -53080752 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1105 206 158 0 26 chr12 68176780 68176819 -53080711 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2 1105 378 291 113 7 chr12 68176858 68177141 -53080389 + L1MA4 LINE L1 5678 5997 -306 2 1105 262 264 35 0 chr12 68177164 68177251 -53080279 + L1MA4 LINE L1 6209 6298 -2 2 1105 445 298 53 0 chr12 68177268 68177382 -53080148 - B1F SINE Alu -13 136 17 2 1105 221 83 28 0 chr12 68178897 68178933 -53078597 + (ATG)n Simple_repeat Simple_repeat 3 39 0 2 1105 279 0 0 0 chr12 68180870 68180901 -53076629 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1105 434 18 18 0 chr12 68181405 68181460 -53076070 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1105 216 0 0 0 chr12 68181460 68181483 -53076047 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1105 24 0 0 0 chr12 68181564 68181588 -53075942 + AT_rich Low_complexity Low_complexity 1 24 0 2 1105 312 48 0 0 chr12 68182314 68182356 -53075174 + (TAG)n Simple_repeat Simple_repeat 2 43 0 2 1105 257 51 26 0 chr12 68182356 68182395 -53075135 + (TTG)n Simple_repeat Simple_repeat 2 41 0 2 1105 331 92 15 15 chr12 68183011 68183077 -53074453 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 2 1105 1248 292 121 35 chr12 68183847 68184501 -53073029 - Lx9 LINE L1 -20 7624 6915 2 1105 795 240 34 43 chr12 68184675 68184884 -53072646 - B3 SINE B2 -4 212 6 2 1105 295 298 0 9 chr12 68185160 68185265 -53072265 - Lx9 LINE L1 -216 7428 7325 2 1105 6030 88 15 6 chr12 68186320 68187178 -53070352 + Lx3_Mus LINE L1 6136 7001 -8 2 1105 446 260 60 65 chr12 68188207 68188392 -53069138 + MTE2b LTR MaLR 193 376 -3 2 1105 198 143 0 0 chr12 68188592 68188627 -53068903 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1105 219 303 52 29 chr12 68188629 68188765 -53068765 - B1F1 SINE Alu -1 148 10 2 1105 43 94 0 0 chr12 68192080 68192207 -53065323 + AT_rich Low_complexity Low_complexity 1 127 0 2 1105 264 248 0 173 chr12 68192687 68192814 -53064716 + RMER15 LTR ERVL 1 105 -470 2 1105 1171 302 28 51 chr12 68193114 68193202 -53064328 + RMER15 LTR ERVL 28 121 -454 2 1105 393 39 0 0 chr12 68193202 68193253 -53064277 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1105 1171 302 28 51 chr12 68193253 68193596 -53063934 + RMER15 LTR ERVL 122 448 -127 2 1105 378 0 0 0 chr12 68193946 68193988 -53063542 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1105 531 0 0 0 chr12 68194147 68194206 -53063324 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1105 404 260 17 17 chr12 68194231 68194411 -53063119 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1105 207 186 0 0 chr12 68194523 68194566 -53062964 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1105 186 133 0 0 chr12 68194569 68194599 -53062931 + (CATA)n Simple_repeat Simple_repeat 2 31 0 2 1105 439 309 9 9 chr12 68194644 68194775 -53062755 - B1_Mur1 SINE Alu -1 148 19 2 1105 513 0 0 0 chr12 68194775 68194832 -53062698 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1105 216 0 0 0 chr12 68194832 68194855 -53062675 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1105 267 31 0 0 chr12 68195786 68195818 -53061712 + (GGA)n Simple_repeat Simple_repeat 2 33 0 2 1105 297 307 101 95 chr12 68196318 68196662 -53060868 - ORR1E LTR MaLR -7 372 8 2 1105 234 0 0 0 chr12 68197437 68197463 -53060067 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1105 21 0 0 0 chr12 68197988 68198009 -53059521 + AT_rich Low_complexity Low_complexity 1 21 0 2 1105 243 0 0 0 chr12 68198398 68198425 -53059105 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1105 396 136 0 0 chr12 68198586 68198674 -53058856 + (T)n Simple_repeat Simple_repeat 1 88 0 2 1105 1125 68 7 0 chr12 68198674 68198820 -53058710 - B1_Mm SINE Alu 0 147 1 2 1105 232 255 0 0 chr12 68199554 68199605 -53057925 - Lx4B LINE L1 -716 6342 6292 2 1105 552 271 107 88 chr12 68199933 68200561 -53056969 - L1M4 LINE L1 -2157 4487 3848 2 1105 325 270 71 103 chr12 68200566 68200776 -53056754 + MLT1E2 LTR MaLR 3 204 -301 2 1105 267 322 166 38 chr12 68200834 68201147 -53056383 + MLT1E2 LTR MaLR 136 488 -17 2 1105 269 259 117 9 chr12 68201160 68201374 -53056156 - L1M4 LINE L1 -2781 3863 3627 2 1105 615 27 0 0 chr12 68201374 68201447 -53056083 + (TCC)n Simple_repeat Simple_repeat 3 75 0 2 1105 309 276 81 39 chr12 68201931 68202029 -53055501 + B3 SINE B2 1 99 -99 2 1105 342 0 0 0 chr12 68202088 68202126 -53055404 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1105 386 307 60 42 chr12 68202252 68202517 -53055013 - L1M4 LINE L1 -4961 1581 1312 2 1105 600 283 115 0 chr12 68202540 68202731 -53054799 + B3 SINE B2 1 213 -3 2 1105 1121 249 94 18 chr12 68202764 68203095 -53054435 + MTE2b LTR MaLR 18 373 -6 2 1105 578 192 53 12 chr12 68203230 68203399 -53054131 + L1_Mus4 LINE L1 6459 6634 -2 2 1105 348 371 51 8 chr12 68203576 68203810 -53053720 - L1M4 LINE L1 -5627 915 672 2 1105 248 229 0 0 chr12 68204051 68204099 -53053431 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1105 198 103 0 0 chr12 68204166 68204195 -53053335 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1105 226 300 142 0 chr12 68204358 68204478 -53053052 - L1M4 LINE L1 -6298 244 108 2 1105 2188 198 45 67 chr12 68204479 68205032 -53052498 - RMER1C Other Other -1 1341 394 2 1105 306 331 45 40 chr12 68205549 68205725 -53051805 + MLT1A LTR MaLR 190 366 -8 2 1105 534 330 28 6 chr12 68206959 68207136 -53050394 + B3 SINE B2 31 211 -5 2 1105 548 257 151 11 chr12 68207956 68208141 -53049389 - B3 SINE B2 -5 211 1 2 1105 751 204 7 21 chr12 68208375 68208520 -53049010 + B1_Mur4 SINE Alu 1 143 -7 2 1105 6738 195 66 8 chr12 68208659 68209998 -53047532 - Lx5 LINE L1 0 7050 5635 2 1105 1717 134 48 3 chr12 68210066 68210358 -53047172 - Lx LINE L1 -7 6647 6343 2 1105 432 0 0 0 chr12 68210511 68210559 -53046971 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1105 384 22 0 0 chr12 68210559 68210603 -53046927 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1105 267 79 0 0 chr12 68210700 68210738 -53046792 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1105 558 54 0 0 chr12 68210738 68210811 -53046719 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 1105 297 370 61 83 chr12 68210861 68211091 -53046439 - B4 SINE B4 -15 277 53 3 1105 233 367 98 33 chr12 68211240 68211423 -53046107 + L2a LINE L2 3021 3215 -211 3 1105 198 0 0 0 chr12 68211575 68211597 -53045933 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1105 21 0 0 0 chr12 68211660 68211681 -53045849 + AT_rich Low_complexity Low_complexity 1 21 0 3 1105 32 43 0 0 chr12 68211708 68211754 -53045776 + AT_rich Low_complexity Low_complexity 1 46 0 3 1105 3279 71 18 2 chr12 68211790 68212230 -53045300 + L1_Mus2 LINE L1 6120 6566 0 3 1105 236 309 192 6 chr12 68212262 68212444 -53045086 - B3 SINE B2 0 216 1 3 1105 339 194 20 10 chr12 68212692 68212791 -53044739 + (TA)n Simple_repeat Simple_repeat 2 101 0 3 1105 396 0 0 0 chr12 68212792 68212836 -53044694 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1105 396 140 21 11 chr12 68213522 68213616 -53043914 + GA-rich Low_complexity Low_complexity 3 97 0 3 1105 576 141 13 26 chr12 68214411 68214564 -53042966 + (TA)n Simple_repeat Simple_repeat 1 151 0 3 1105 185 279 0 0 chr12 68215615 68215658 -53041872 + L2 LINE L2 2226 2268 -1151 3 1105 219 364 0 13 chr12 68215884 68215962 -53041568 + PB1D10 SINE Alu 1 77 -40 3 1105 231 284 206 0 chr12 68216140 68216242 -53041288 + MIR SINE MIR 129 251 -11 3 1105 309 26 0 0 chr12 68218206 68218244 -53039286 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1105 180 0 0 0 chr12 68218713 68218733 -53038797 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1105 487 283 55 28 chr12 68218801 68219055 -53038475 + Lx9 LINE L1 7351 7611 -33 3 1105 1837 199 283 24 chr12 68220431 68220886 -53036644 - Lx3C LINE L1 -11 6965 6395 3 1105 1152 192 13 4 chr12 68220886 68221116 -53036414 - Lx2 LINE L1 0 6997 6766 3 1105 341 147 118 0 chr12 68221116 68221166 -53036364 - Lx3C LINE L1 -582 6394 6337 3 1105 3443 261 36 29 chr12 68221190 68222112 -53035418 + Lx6 LINE L1 6526 7453 -7 3 1105 779 110 125 0 chr12 68222361 68222497 -53035033 + L1Md_F2 LINE L1 6430 6582 0 3 1105 444 37 0 0 chr12 68222662 68222716 -53034814 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1105 214 29 57 0 chr12 68223313 68223348 -53034182 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1105 207 0 0 0 chr12 68223888 68223911 -53033619 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1105 302 318 22 22 chr12 68224708 68224843 -53032687 + Lx9 LINE L1 7133 7267 -377 3 1105 267 340 44 25 chr12 68225949 68226109 -53031421 - MIR SINE MIR -51 211 49 3 1105 22 0 0 0 chr12 68226983 68227005 -53030525 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 21 0 0 0 chr12 68227773 68227794 -53029736 + AT_rich Low_complexity Low_complexity 1 21 0 3 1105 2461 125 78 2 chr12 68227821 68228231 -53029299 - Lx LINE L1 -1 6653 6213 3 1105 444 150 0 0 chr12 68228247 68228327 -53029203 + (TCCC)n Simple_repeat Simple_repeat 1 80 0 3 1105 267 395 8 0 chr12 68228355 68228474 -53029056 - Lx8 LINE L1 -181 7292 7173 3 1105 22 35 0 0 chr12 68229110 68229139 -53028391 + AT_rich Low_complexity Low_complexity 1 29 0 3 1105 1946 233 73 87 chr12 68230050 68230596 -53026934 + RMER1B Other Other 423 952 -114 3 1105 207 0 0 0 chr12 68230596 68230619 -53026911 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1105 1946 233 73 87 chr12 68230619 68230725 -53026805 + RMER1B Other Other 953 1066 0 3 1105 209 347 105 20 chr12 68230789 68230942 -53026588 - MIRb SINE MIR -63 205 40 3 1105 607 291 62 14 chr12 68230988 68231197 -53026333 - MLT1A0 LTR MaLR -3 362 144 3 1105 657 0 0 0 chr12 68231973 68232046 -53025484 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1105 235 349 63 82 chr12 68232809 68232968 -53024562 + MIRb SINE MIR 105 260 -8 3 1105 180 0 0 0 chr12 68233252 68233272 -53024258 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1105 1054 102 0 0 chr12 68233272 68233409 -53024121 - B1_Mus2 SINE Alu -9 138 2 3 1105 928 270 246 39 chr12 68234989 68235348 -53022182 + RLTR21 LTR ERVK 959 1394 -178 3 1105 288 0 0 0 chr12 68235348 68235380 -53022150 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1105 928 270 246 39 chr12 68235380 68235529 -53022001 + RLTR21 LTR ERVK 1395 1572 0 3 1105 1854 217 8 8 chr12 68236080 68236443 -53021087 - Lx5 LINE L1 -537 6513 6151 3 1105 2317 232 32 11 chr12 68236414 68236950 -53020580 + Lx5 LINE L1 6503 7049 -1 3 1105 2080 258 70 23 chr12 68236978 68237704 -53019826 - L1_Rod LINE L1 0 5847 5088 3 1105 182 105 26 0 chr12 68237944 68237982 -53019548 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1105 252 278 183 0 chr12 68237993 68238108 -53019422 + Lx9 LINE L1 6346 6481 -1163 3 1105 414 69 0 0 chr12 68238180 68238238 -53019292 + (CTA)n Simple_repeat Simple_repeat 1 58 0 3 1105 1155 332 88 46 chr12 68238313 68239055 -53018475 + Lx9 LINE L1 6604 7376 -268 3 1105 300 311 85 7 chr12 68239310 68239457 -53018073 + MIR SINE MIR 62 218 -50 3 1105 25 51 0 0 chr12 68239804 68239843 -53017687 + AT_rich Low_complexity Low_complexity 1 39 0 3 1105 423 258 103 51 chr12 68240330 68240661 -53016869 - L1M4 LINE L1 -1634 4512 4165 3 1105 187 250 71 29 chr12 68241707 68241777 -53015753 + L3 LINE CR1 2135 2207 -2282 3 1105 316 82 16 16 chr12 68242101 68242163 -53015367 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 3 1105 300 386 71 37 chr12 68242947 68243243 -53014287 + L1ME1 LINE L1 5874 6179 0 3 1105 383 312 3 0 chr12 68244167 68244327 -53013203 - L1M2 LINE L1 -845 5298 5120 3 1105 3331 191 52 21 chr12 68244331 68245087 -53012443 + RLTR22_Mur LTR ERVK 30 808 -1040 3 1105 2124 245 128 52 chr12 68245414 68246163 -53011367 + RMER13A LTR ERVK 55 860 0 3 1105 305 247 0 72 chr12 68246163 68246244 -53011286 + RMER12 LTR ERVK 1246 1320 -2 3 1105 388 310 74 40 chr12 68248157 68248305 -53009225 - RSINE1 SINE B4 -2 163 11 3 1105 214 333 18 0 chr12 68248580 68248637 -53008893 + B1F1 SINE Alu 3 60 -89 3 1105 1165 119 5 5 chr12 68248863 68249049 -53008481 + Lx LINE L1 6463 6648 -6 3 1105 192 40 0 0 chr12 68249356 68249381 -53008149 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1105 23 25 0 24 chr12 68251949 68251967 -53005563 + AT_rich Low_complexity Low_complexity 1 18 0 3 1105 268 367 31 12 chr12 68251967 68252127 -53005403 + RSINE1 SINE B4 3 165 0 3 1105 23 25 0 24 chr12 68252127 68252149 -53005381 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 198 143 0 0 chr12 68252357 68252392 -53005138 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 3 1105 787 106 7 7 chr12 68253052 68253195 -53004335 + (TAGA)n Simple_repeat Simple_repeat 4 146 0 3 1105 21 57 0 0 chr12 68254018 68254053 -53003477 + AT_rich Low_complexity Low_complexity 1 35 0 3 1105 614 235 130 9 chr12 68254060 68254275 -53003255 - Lx2B LINE L1 -4 6996 6756 3 1105 321 232 321 10 chr12 68254494 68254699 -53002831 + Lx9 LINE L1 7369 7637 -7 3 1105 233 302 49 21 chr12 68255114 68255256 -53002274 - L1_Mur2 LINE L1 -564 5313 5168 3 1105 23 0 0 0 chr12 68255365 68255388 -53002142 + AT_rich Low_complexity Low_complexity 1 23 0 3 1105 4432 123 45 29 chr12 68256494 68257290 -53000240 - RMER17D2 LTR ERVK 0 809 1 3 1105 316 324 65 68 chr12 68257443 68257721 -52999809 + B4 SINE B4 2 278 -14 3 1105 333 0 0 0 chr12 68257787 68257824 -52999706 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1105 724 219 64 34 chr12 68258015 68258251 -52999279 + L1MA6 LINE L1 6052 6294 -6 3 1105 264 30 0 0 chr12 68259045 68259078 -52998452 + (TATAA)n Simple_repeat Simple_repeat 2 34 0 3 1105 288 323 0 100 chr12 68259122 68259232 -52998298 - PB1D9 SINE Alu -16 104 6 3 1105 791 235 174 8 chr12 68259264 68259500 -52998030 - Lx4B LINE L1 0 7058 6784 3 1105 314 107 18 0 chr12 68259523 68259579 -52997951 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1105 5443 181 67 34 chr12 68259680 68261839 -52995691 - Lx2 LINE L1 -7 6990 4788 3 1105 339 85 0 0 chr12 68262277 68262324 -52995206 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1105 434 328 8 23 chr12 68263376 68263507 -52994023 + RSINE1 SINE B4 22 150 -15 3 1105 429 70 0 0 chr12 68263514 68263571 -52993959 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1105 204 40 0 0 chr12 68263914 68263939 -52993591 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1105 387 0 0 0 chr12 68263939 68263981 -52993549 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1105 322 272 30 24 chr12 68264022 68264188 -52993342 - Lx9 LINE L1 -1 7643 7477 3 1105 339 78 0 0 chr12 68264194 68264245 -52993285 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1105 387 219 87 9 chr12 68264246 68264361 -52993169 - Lx9 LINE L1 -182 7462 7339 3 1105 609 231 14 7 chr12 68264359 68264503 -52993027 + Lx9 LINE L1 7021 7165 -479 3 1105 26 64 0 0 chr12 68265302 68265349 -52992181 + AT_rich Low_complexity Low_complexity 1 47 0 3 1105 192 77 0 0 chr12 68265556 68265582 -52991948 + (CAT)n Simple_repeat Simple_repeat 3 28 0 3 1105 22 0 0 0 chr12 68265608 68265630 -52991900 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 227 239 50 71 chr12 68266118 68266217 -52991313 + MTEb LTR MaLR 256 352 -27 3 1105 631 252 0 20 chr12 68266817 68266963 -52990567 - B1_Mur1 SINE Alu -1 148 6 3 1105 2326 102 56 20 chr12 68268565 68268957 -52988573 + Lx3_Mus LINE L1 6596 7001 -8 3 1105 5247 89 24 5 chr12 68269053 68269800 -52987730 - L1Md_F2 LINE L1 0 6582 5822 3 1105 4458 69 0 0 chr12 68269800 68270362 -52987168 + L1Md_F2 LINE L1 5300 5861 -22 3 1105 405 286 59 15 chr12 68270850 68270985 -52986545 - RSINE1 SINE B4 -6 159 19 3 1105 185 180 0 20 chr12 68271154 68271205 -52986325 + (CATG)n Simple_repeat Simple_repeat 3 52 0 3 1105 291 311 11 0 chr12 68271243 68271333 -52986197 - Lx7 LINE L1 -396 7300 7210 4 1105 26 30 0 0 chr12 68271840 68271873 -52985657 + AT_rich Low_complexity Low_complexity 1 33 0 4 1105 1103 285 28 23 chr12 68272461 68272932 -52984598 + L1MC LINE L1 3808 4280 -1866 4 1105 969 169 0 6 chr12 68272965 68273132 -52984398 - Lx4B LINE L1 -1068 5990 5825 4 1105 1640 192 74 44 chr12 68273132 68273581 -52983949 + Lx2B LINE L1 6502 7050 -8 4 1105 689 252 81 37 chr12 68273665 68273986 -52983544 + L1MC LINE L1 4446 4780 -1366 4 1105 312 248 69 27 chr12 68274836 68274977 -52982553 + MLT1A1 LTR MaLR 225 383 -7 4 1105 30 45 0 0 chr12 68275270 68275314 -52982216 + AT_rich Low_complexity Low_complexity 1 44 0 4 1105 753 286 35 30 chr12 68275322 68275553 -52981977 + B4 SINE B4 29 260 -32 4 1105 285 140 0 0 chr12 68275893 68275950 -52981580 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1105 29 28 0 0 chr12 68276474 68276510 -52981020 + AT_rich Low_complexity Low_complexity 1 36 0 4 1105 792 112 0 58 chr12 68277772 68277961 -52979569 + GA-rich Low_complexity Low_complexity 3 180 0 4 1105 1608 29 14 5 chr12 68278839 68279048 -52978482 + L1Md_F3 LINE L1 6373 6583 -1 4 1105 24 0 0 0 chr12 68280470 68280494 -52977036 + AT_rich Low_complexity Low_complexity 1 24 0 4 1105 432 0 0 0 chr12 68281454 68281502 -52976028 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1105 462 333 152 9 chr12 68281511 68281735 -52975795 - B4A SINE B4 0 292 37 4 1105 407 304 35 9 chr12 68281798 68281911 -52975619 - ID_B1 SINE B4 -9 215 100 4 1105 369 58 0 0 chr12 68282510 68282562 -52974968 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1105 1396 199 197 14 chr12 68283298 68283654 -52973876 - MTC LTR MaLR 0 421 1 4 1105 444 284 45 13 chr12 68284127 68284284 -52973246 - MER5A1 DNA MER1_type -4 162 1 4 1105 357 24 0 0 chr12 68284939 68284981 -52972549 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1105 204 73 0 89 chr12 68286118 68286163 -52971367 + A-rich Low_complexity Low_complexity 2 42 0 4 1105 231 114 0 0 chr12 68286657 68286692 -52970838 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1105 596 300 30 91 chr12 68286692 68286923 -52970607 - ID_B1 SINE B4 0 224 8 4 1105 196 250 21 0 chr12 68287386 68287434 -52970096 + L2 LINE L2 2428 2476 -943 4 1105 351 360 80 4 chr12 68287977 68288203 -52969327 + MIRb SINE MIR 20 262 -6 4 1106 405 233 0 0 chr12 68288701 68288774 -52968756 + B3 SINE B2 1 73 -143 4 1106 803 91 16 0 chr12 68288774 68288895 -52968635 + (TATATG)n Simple_repeat Simple_repeat 4 126 0 4 1106 324 48 0 0 chr12 68288984 68289026 -52968504 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 4 1106 253 279 233 0 chr12 68289515 68289601 -52967929 + L1M5 LINE L1 5556 5661 -463 4 1106 496 307 46 13 chr12 68290080 68290232 -52967298 - ID_B1 SINE B4 -53 171 15 4 1106 315 0 0 0 chr12 68291612 68291647 -52965883 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1106 383 200 64 64 chr12 68292281 68292468 -52965062 - RMER17A LTR ERVK -343 408 222 4 1106 5503 105 17 13 chr12 68293262 68294093 -52963437 + Lx3A LINE L1 6148 6981 0 4 1106 448 281 45 80 chr12 68294768 68294814 -52962716 - B2_Mm2 SINE B2 0 195 147 4 1106 726 23 0 0 chr12 68294814 68294902 -52962628 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1106 746 229 39 1 chr12 68294902 68295056 -52962474 - B3A SINE B2 -38 160 2 4 1106 251 72 0 23 chr12 68295196 68295239 -52962291 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 1106 185 374 11 32 chr12 68296226 68296320 -52961210 + L2 LINE L2 2672 2763 -656 4 1106 231 114 0 0 chr12 68296352 68296387 -52961143 + (CTG)n Simple_repeat Simple_repeat 1 35 0 4 1106 188 219 16 0 chr12 68296560 68296584 -52960946 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1106 405 0 0 0 chr12 68296584 68296629 -52960901 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1106 188 219 16 0 chr12 68296629 68296668 -52960862 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 1106 21 0 0 0 chr12 68296836 68296857 -52960673 + AT_rich Low_complexity Low_complexity 1 21 0 4 1106 1402 205 86 6 chr12 68296929 68297243 -52960287 + Lx5 LINE L1 6711 7049 -1 4 1106 913 184 5 42 chr12 68297675 68297708 -52959822 - B2_Mm1t SINE B2 -5 188 163 4 1106 4692 52 2 0 chr12 68297708 68298286 -52959244 + L1_Mus1 LINE L1 5986 6564 -3 4 1106 191 36 0 35 chr12 68298291 68298320 -52959210 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 1106 1059 106 0 0 chr12 68298320 68298473 -52959057 - B2_Mm2 SINE B2 -36 157 3 4 1106 329 342 120 35 chr12 68298868 68298952 -52958578 + MLT1D LTR MaLR 1 79 -426 4 1106 291 28 0 0 chr12 68298952 68298988 -52958542 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1106 329 342 120 35 chr12 68298988 68299245 -52958285 + MLT1D LTR MaLR 80 371 -134 4 1106 1092 276 55 66 chr12 68299246 68299685 -52957845 + Lx6 LINE L1 7000 7433 -27 4 1106 257 267 93 0 chr12 68299700 68299786 -52957744 + MLT1D LTR MaLR 396 489 -16 4 1106 235 299 0 0 chr12 68300990 68301067 -52956463 + T-rich Low_complexity Low_complexity 1 77 0 4 1106 6812 60 2 2 chr12 68301780 68302651 -52954879 + L1Md_F2 LINE L1 4716 5586 -297 4 1106 7595 65 0 19 chr12 68302651 68303654 -52953876 + L1Md_F2 LINE L1 5587 6570 -12 4 1106 423 98 0 0 chr12 68305195 68305256 -52952274 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1106 390 356 89 27 chr12 68305427 68305684 -52951846 + MLT2B4 LTR ERVL 1 273 -283 4 1106 488 307 90 39 chr12 68305716 68305950 -52951580 + MLT1D LTR MaLR 260 505 0 4 1106 297 346 23 15 chr12 68306325 68306457 -52951073 - MLT1B LTR MaLR -66 324 192 4 1106 348 111 0 0 chr12 68307369 68307432 -52950098 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1106 263 314 0 0 chr12 68307738 68307808 -52949722 + MER70-int LTR ERVL 2165 2234 -2789 4 1106 22 0 0 0 chr12 68308213 68308235 -52949295 + AT_rich Low_complexity Low_complexity 1 22 0 4 1106 1247 34 0 0 chr12 68308235 68308382 -52949148 - B1_Mus2 SINE Alu 0 147 1 4 1106 22 0 0 0 chr12 68309939 68309961 -52947569 + AT_rich Low_complexity Low_complexity 1 22 0 4 1106 216 0 0 0 chr12 68310511 68310535 -52946995 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1106 380 301 0 0 chr12 68312368 68312451 -52945079 + RSINE1 SINE B4 51 133 -32 4 1106 347 89 18 0 chr12 68312457 68312513 -52945017 + (CATA)n Simple_repeat Simple_repeat 2 58 0 4 1106 393 203 26 19 chr12 68312997 68313153 -52944377 - Lx9 LINE L1 -3 7641 7485 4 1106 23 54 0 0 chr12 68313375 68313412 -52944118 + AT_rich Low_complexity Low_complexity 1 37 0 4 1106 297 0 0 0 chr12 68315053 68315086 -52942444 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 4 1106 576 0 0 0 chr12 68316700 68316764 -52940766 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 4 1106 297 0 0 0 chr12 68316764 68316797 -52940733 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 4 1106 1075 96 0 7 chr12 68318351 68318498 -52939032 + B1_Mus1 SINE Alu 3 148 0 4 1106 245 348 40 54 chr12 68319397 68319546 -52937984 - MER5A DNA MER1_type -5 184 38 4 1106 285 29 0 0 chr12 68319960 68319994 -52937536 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1106 459 0 0 0 chr12 68320464 68320515 -52937015 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1106 469 68 13 13 chr12 68320985 68321060 -52936470 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1106 827 118 7 0 chr12 68322218 68322362 -52935168 + (CA)n Simple_repeat Simple_repeat 1 145 0 4 1106 323 171 0 13 chr12 68322834 68322911 -52934619 + GA-rich Low_complexity Low_complexity 2 77 0 4 1106 239 79 0 26 chr12 68323460 68323499 -52934031 + (GGA)n Simple_repeat Simple_repeat 3 40 0 4 1106 533 234 9 0 chr12 68325211 68325318 -52932212 + PB1D10 SINE Alu 10 117 0 4 1106 5073 55 31 0 chr12 68326161 68326812 -52930718 + L1_Mus1 LINE L1 5884 6554 -13 4 1106 335 309 107 28 chr12 68327258 68327474 -52930056 - CR1_Mam LINE CR1 -576 1628 1396 4 1106 416 254 33 25 chr12 68328908 68329029 -52928501 + MLT1C LTR MaLR 59 180 -287 4 1106 2771 149 4 18 chr12 68329541 68330041 -52927489 - L1_Mm LINE L1 -2032 3851 3359 4 1106 1281 118 9 19 chr12 68330041 68330257 -52927273 + L1_Mus3 LINE L1 6419 6632 -6 4 1106 2124 156 99 19 chr12 68331654 68332066 -52925464 - Lx2B LINE L1 0 7000 6556 4 1106 21 71 0 0 chr12 68332120 68332162 -52925368 + AT_rich Low_complexity Low_complexity 1 42 0 4 1106 217 200 29 29 chr12 68332200 68332303 -52925227 + CT-rich Low_complexity Low_complexity 2 104 0 4 1106 378 0 0 0 chr12 68332958 68333000 -52924530 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1106 388 228 153 36 chr12 68333110 68333306 -52924224 + L1_Mur3 LINE L1 2081 2299 -3581 4 1106 378 0 0 0 chr12 68333418 68333460 -52924070 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1106 1090 279 72 25 chr12 68333746 68334400 -52923130 + L1_Mur3 LINE L1 2312 2996 -2884 4 1106 685 266 139 125 chr12 68334978 68335330 -52922200 - MTE2b LTR MaLR -20 359 3 4 1106 1287 169 4 0 chr12 68335447 68335678 -52921852 + L1Md_F2 LINE L1 106 337 -6282 4 1106 31634 71 0 4 chr12 68335671 68340617 -52916913 + L1Md_F2 LINE L1 563 5588 -298 4 1106 7983 55 5 0 chr12 68340618 68341609 -52915921 + L1Md_F2 LINE L1 5590 6585 0 4 1106 304 358 67 0 chr12 68341991 68342125 -52915405 - B4 SINE B4 -4 288 146 4 1106 737 142 35 14 chr12 68342126 68342269 -52915261 - URR1A DNA MER1_type 0 226 81 4 1106 340 333 6 159 chr12 68342306 68342488 -52915042 - B4A SINE B4 -138 154 1 4 1106 1521 160 27 0 chr12 68343319 68343612 -52913918 - L1_Mur2 LINE L1 -2902 2975 2675 4 1106 5676 141 56 15 chr12 68343608 68344662 -52912868 + Lx3A LINE L1 5866 6966 -15 4 1106 531 0 0 0 chr12 68344662 68344721 -52912809 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1106 201 94 0 0 chr12 68344721 68344752 -52912778 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 4 1106 1558 176 42 28 chr12 68344775 68345494 -52912036 - L1_Mur2 LINE L1 -4314 1563 887 4 1106 228 310 81 0 chr12 68345807 68345894 -52911636 + MLT1B LTR MaLR 29 122 -268 4 1106 1089 291 100 30 chr12 68345897 68346358 -52911172 - MTE-int LTR MaLR -959 621 104 4 1106 411 21 0 0 chr12 68346513 68346561 -52910969 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1106 27 29 0 0 chr12 68346619 68346653 -52910877 + AT_rich Low_complexity Low_complexity 1 34 0 4 1106 575 289 11 48 chr12 68346702 68346891 -52910639 - B3A SINE B2 -16 182 1 5 1106 231 36 0 0 chr12 68346899 68346927 -52910603 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1106 387 0 0 0 chr12 68346927 68346969 -52910561 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1106 219 36 0 0 chr12 68346969 68346996 -52910534 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1106 548 354 51 53 chr12 68347605 68348249 -52909281 + ERVL-E-int LTR ERVL 3005 3647 -2020 5 1106 2349 217 27 2 chr12 68348278 68348795 -52908735 + Lx5 LINE L1 6276 6805 -245 5 1106 24 32 0 0 chr12 68349765 68349796 -52907734 + AT_rich Low_complexity Low_complexity 1 31 0 5 1106 281 372 22 37 chr12 68349923 68350057 -52907473 + B1F1 SINE Alu 10 141 -8 5 1106 21 0 0 0 chr12 68350125 68350146 -52907384 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 21 0 0 0 chr12 68350376 68350397 -52907133 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 240 321 58 102 chr12 68350743 68350921 -52906609 - MLT1H2 LTR MaLR -9 570 372 5 1106 22 0 0 0 chr12 68351842 68351864 -52905666 + AT_rich Low_complexity Low_complexity 1 22 0 5 1106 305 287 29 100 chr12 68352111 68352271 -52905259 + MTE2a LTR MaLR 45 165 -254 5 1106 245 191 0 0 chr12 68353258 68353300 -52904230 - RLTR31_Mur LTR ERVK 0 553 512 5 1106 1771 243 56 36 chr12 68353295 68353799 -52903731 - RLTR17 LTR ERVK -74 618 105 5 1106 2910 151 13 15 chr12 68354351 68354895 -52902635 - Lx2 LINE L1 -560 6437 5893 5 1106 226 365 0 0 chr12 68354974 68355048 -52902482 - L1M3e LINE L1 -6746 284 211 5 1106 357 24 0 0 chr12 68355150 68355192 -52902338 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1106 398 318 123 29 chr12 68355521 68355852 -52901678 - L1_Rod LINE L1 -3941 1906 1519 5 1106 2234 166 8 3 chr12 68355852 68356227 -52901303 - ORR1C1 LTR MaLR -1 377 1 5 1106 398 318 123 29 chr12 68356227 68356514 -52901016 - L1_Rod LINE L1 -4329 1518 1230 5 1106 26 0 0 0 chr12 68356663 68356689 -52900841 + AT_rich Low_complexity Low_complexity 1 26 0 5 1106 21 57 0 0 chr12 68357201 68357236 -52900294 + AT_rich Low_complexity Low_complexity 1 35 0 5 1106 3639 134 49 15 chr12 68357558 68358165 -52899365 - Lx3C LINE L1 -10 6966 6339 5 1106 317 25 0 0 chr12 68358168 68358208 -52899322 + Lx3A LINE L1 5896 5935 -1046 5 1106 24 32 0 0 chr12 68358209 68358240 -52899290 + AT_rich Low_complexity Low_complexity 1 31 0 5 1106 312 27 0 0 chr12 68359068 68359105 -52898425 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 5 1106 450 0 0 0 chr12 68359105 68359154 -52898376 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 5 1106 623 273 94 28 chr12 68359924 68360105 -52897425 + B3A SINE B2 1 193 -5 5 1106 540 0 0 0 chr12 68360435 68360495 -52897035 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1106 4355 14 2 12 chr12 68361149 68361647 -52895883 - MT2_Mm LTR ERVL 0 493 1 5 1106 302 0 0 0 chr12 68361647 68361685 -52895845 - MERVL-int LTR ERVL 0 5485 5448 5 1106 390 167 46 35 chr12 68361685 68361772 -52895758 - ORR1A3-int LTR MaLR -1323 640 553 5 1106 38723 16 14 0 chr12 68361772 68367059 -52890471 - MERVL-int LTR ERVL -125 5360 1 5 1106 4355 14 2 12 chr12 68367059 68367557 -52889973 - MT2_Mm LTR ERVL 0 493 1 5 1106 802 308 45 29 chr12 68367711 68368019 -52889511 + MLT1B LTR MaLR 62 374 -16 5 1106 305 267 104 9 chr12 68368096 68368202 -52889328 - MTE2b LTR MaLR -17 362 247 5 1106 279 0 0 0 chr12 68368215 68368246 -52889284 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1106 291 390 6 104 chr12 68368246 68368429 -52889101 - MTE2b LTR MaLR -214 165 1 5 1106 312 111 0 0 chr12 68369057 68369111 -52888419 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1106 534 31 0 0 chr12 68369111 68369174 -52888356 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1106 210 284 0 139 chr12 68369196 68369282 -52888248 - ID4 SINE ID -6 77 4 5 1106 22 56 0 0 chr12 68370306 68370342 -52887188 + AT_rich Low_complexity Low_complexity 1 36 0 5 1106 358 269 70 53 chr12 68370810 68370982 -52886548 - Lx7 LINE L1 -68 7628 7449 5 1106 339 25 0 0 chr12 68370982 68371022 -52886508 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1106 358 269 70 53 chr12 68371022 68371092 -52886438 - Lx7 LINE L1 -248 7448 7382 5 1106 1542 229 57 10 chr12 68371108 68371513 -52886017 - Lx7 LINE L1 -432 7264 6841 5 1106 6345 120 7 9 chr12 68371522 68372575 -52884955 + L1_Mm LINE L1 4719 5768 -115 5 1106 645 357 39 23 chr12 68372574 68372964 -52884566 - Lx7 LINE L1 -1080 6616 6221 5 1106 325 279 75 97 chr12 68373259 68373434 -52884096 + L2b LINE L2 3224 3379 -8 5 1106 308 220 0 33 chr12 68375196 68375257 -52882273 - B4A SINE B4 -233 59 1 5 1106 2231 88 20 81 chr12 68375353 68375700 -52881830 + ORR1A2 LTR MaLR 1 326 -1 5 1106 743 261 79 24 chr12 68375859 68376024 -52881506 - B3 SINE B2 -42 174 1 5 1106 894 179 53 55 chr12 68376293 68376541 -52880989 - RMER6C LTR ERVK 0 720 527 5 1106 39491 4 0 0 chr12 68376668 68383036 -52874494 - L1Md_A LINE L1 0 6582 214 5 1106 1284 221 41 47 chr12 68383269 68383611 -52873919 - RMER6C LTR ERVK -56 634 295 5 1106 375 212 0 0 chr12 68383614 68383699 -52873831 + CT-rich Low_complexity Low_complexity 1 85 0 5 1106 1142 218 143 26 chr12 68383699 68384119 -52873411 - RMER6C LTR ERVK -221 469 1 5 1106 288 0 0 0 chr12 68384803 68384835 -52872695 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1106 26 0 0 0 chr12 68386244 68386270 -52871260 + AT_rich Low_complexity Low_complexity 1 26 0 5 1106 400 368 17 63 chr12 68386485 68386659 -52870871 - ORR1D2 LTR MaLR -141 229 64 5 1106 2767 69 0 11 chr12 68386893 68387274 -52870256 - L1_Mus1 LINE L1 -560 6007 5631 5 1106 529 190 23 6 chr12 68387283 68387458 -52870072 + GA-rich Low_complexity Low_complexity 2 179 0 5 1106 325 276 112 119 chr12 68387458 68387709 -52869821 + RLTR12B LTR ERVK 237 485 -43 5 1106 21 71 0 0 chr12 68387899 68387941 -52869589 + AT_rich Low_complexity Low_complexity 1 42 0 5 1106 228 96 37 37 chr12 68388344 68388398 -52869132 + CT-rich Low_complexity Low_complexity 1 54 0 5 1106 245 266 35 41 chr12 68388520 68388665 -52868865 - Lx9 LINE L1 -1 7643 7500 5 1106 2971 78 177 2 chr12 68388741 68389177 -52868353 + RLTR1B LTR ERV1 1 512 0 5 1106 370 376 85 8 chr12 68389200 68389460 -52868070 - Lx8 LINE L1 -238 7235 6956 5 1106 2398 190 155 91 chr12 68389471 68390328 -52867202 - RLTR25B LTR ERVK 0 1028 1 5 1106 27 29 0 0 chr12 68390360 68390394 -52867136 + AT_rich Low_complexity Low_complexity 1 34 0 5 1106 1294 305 39 3 chr12 68390405 68390793 -52866737 - Lx9 LINE L1 -627 7017 6616 5 1106 296 337 5 79 chr12 68391291 68391494 -52866036 - RMER4B LTR ERVK -386 199 12 5 1106 813 167 98 7 chr12 68391528 68391786 -52865744 + RMER6D LTR ERVK 1 323 -397 5 1106 268 103 35 0 chr12 68391800 68391858 -52865672 + (TAA)n Simple_repeat Simple_repeat 1 60 0 5 1106 1263 117 0 0 chr12 68392125 68392450 -52865080 + (CA)n Simple_repeat Simple_repeat 1 325 0 5 1106 357 217 0 0 chr12 68393128 68393188 -52864342 + Lx8 LINE L1 7151 7210 -263 5 1106 596 271 321 4 chr12 68394041 68394309 -52863221 - MTE2b LTR MaLR -9 370 17 5 1106 369 0 0 0 chr12 68395367 68395408 -52862122 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 1106 23 0 0 0 chr12 68396677 68396700 -52860830 + AT_rich Low_complexity Low_complexity 1 23 0 5 1106 341 0 0 0 chr12 68396775 68396812 -52860718 - L1_Mus1 LINE L1 -136 6431 6395 5 1106 906 113 0 0 chr12 68396812 68396954 -52860576 + L1_Mus1 LINE L1 6425 6566 -1 5 1106 863 177 71 6 chr12 68396981 68397133 -52860397 + B2_Mm2 SINE B2 2 166 -29 5 1106 402 21 0 0 chr12 68397133 68397180 -52860350 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1106 863 177 71 6 chr12 68397180 68397209 -52860321 + B2_Mm2 SINE B2 167 194 -1 5 1106 35 0 0 0 chr12 68399333 68399368 -52858162 + AT_rich Low_complexity Low_complexity 1 35 0 5 1106 23 0 0 0 chr12 68399411 68399434 -52858096 + AT_rich Low_complexity Low_complexity 1 23 0 5 1106 416 302 107 47 chr12 68400041 68400256 -52857274 - MER2 DNA MER2_type -69 276 49 5 1106 404 253 125 33 chr12 68400647 68400831 -52856699 - L1MA5A LINE L1 -435 5862 5662 5 1106 1611 215 63 16 chr12 68401273 68401651 -52855879 + MTD LTR MaLR 1 396 -23 5 1106 216 0 0 0 chr12 68401696 68401720 -52855810 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1106 289 339 29 17 chr12 68401805 68401979 -52855551 + L1MC LINE L1 3392 3567 -2579 5 1106 259 292 86 23 chr12 68402188 68402363 -52855167 + L1ME2 LINE L1 4030 4215 -1931 5 1106 1044 112 0 0 chr12 68402531 68402692 -52854838 + L1_Mus1 LINE L1 6405 6565 -2 5 1106 252 0 0 0 chr12 68402733 68402761 -52854769 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1106 1206 224 65 4 chr12 68402762 68403022 -52854508 + MTD LTR MaLR 130 405 -14 5 1106 24 67 0 0 chr12 68403304 68403349 -52854181 + AT_rich Low_complexity Low_complexity 1 45 0 5 1106 238 212 0 15 chr12 68403471 68403538 -52853992 + A-rich Low_complexity Low_complexity 6 71 0 5 1106 317 328 69 101 chr12 68403632 68403695 -52853835 + L1ME2 LINE L1 5727 5801 -363 5 1106 483 87 0 0 chr12 68403695 68403764 -52853766 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1106 317 328 69 101 chr12 68403764 68403848 -52853682 + L1ME2 LINE L1 5802 5887 -277 5 1106 4874 84 35 6 chr12 68403848 68404557 -52852973 + L1_Mus3 LINE L1 5902 6631 -7 5 1106 317 328 69 101 chr12 68404557 68404784 -52852746 + L1ME2 LINE L1 5888 6090 -74 5 1106 607 229 28 28 chr12 68404999 68405143 -52852387 - B1_Mur4 SINE Alu -5 145 2 5 1106 320 250 45 0 chr12 68405280 68405368 -52852162 + L1_Mur3 LINE L1 734 825 -6903 5 1106 844 302 62 14 chr12 68405594 68406143 -52851387 + L1_Mur3 LINE L1 838 1414 -4466 5 1106 729 237 10 5 chr12 68406148 68406356 -52851174 + L1_Mur3 LINE L1 1552 1760 -4120 5 1106 1130 286 10 75 chr12 68406344 68406602 -52850928 + Lx7 LINE L1 6951 7188 -508 5 1106 1213 47 0 20 chr12 68406602 68406753 -52850777 - B1_Mus1 SINE Alu 0 148 1 5 1106 1130 286 10 75 chr12 68406753 68406909 -52850621 + Lx7 LINE L1 7189 7338 -358 5 1106 1563 166 281 124 chr12 68407065 68407176 -52850354 - RLTR25A LTR ERVK 0 1028 908 5 1106 687 25 0 0 chr12 68407176 68407257 -52850273 + (TC)n Simple_repeat Simple_repeat 1 81 0 5 1106 1563 166 281 124 chr12 68407257 68407278 -52850252 - RLTR25A LTR ERVK -121 907 840 5 1106 423 0 0 0 chr12 68407278 68407325 -52850205 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1106 2033 132 206 30 chr12 68407325 68407625 -52849905 - RLTR25A LTR ERVK -256 847 451 5 1106 180 0 0 0 chr12 68407625 68407645 -52849885 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1106 2033 128 197 18 chr12 68407645 68407823 -52849707 - RLTR25A LTR ERVK -590 513 323 5 1106 379 101 133 11 chr12 68407824 68407914 -52849616 + Lx LINE L1 6550 6650 -4 5 1106 1638 167 37 34 chr12 68408178 68408500 -52849030 - RLTR25A LTR ERVK -705 323 1 5 1106 643 343 46 18 chr12 68408937 68409219 -52848311 + B4 SINE B4 1 290 -2 5 1106 504 0 0 0 chr12 68409219 68409275 -52848255 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 5 1106 23 33 0 0 chr12 68409311 68409341 -52848189 + AT_rich Low_complexity Low_complexity 1 30 0 6 1106 485 334 81 104 chr12 68409531 68409784 -52847746 - MLT1F LTR MaLR -43 505 265 6 1106 531 0 0 0 chr12 68409784 68409843 -52847687 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 6 1106 485 334 81 104 chr12 68409843 68410033 -52847497 - MLT1F LTR MaLR -284 264 72 6 1106 207 0 0 0 chr12 68410059 68410082 -52847448 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1106 445 367 152 26 chr12 68410279 68410513 -52847017 + MLT2F LTR ERVL 182 461 -202 6 1106 1940 136 28 31 chr12 68410513 68410840 -52846690 + ORR1A3 LTR MaLR 1 326 0 6 1106 445 367 152 26 chr12 68410840 68411033 -52846497 + MLT2F LTR ERVL 462 662 -1 6 1106 280 314 174 11 chr12 68411448 68411638 -52845892 - MLT1A0 LTR MaLR 0 365 145 6 1106 713 89 24 8 chr12 68411652 68411777 -52845753 + (TCCC)n Simple_repeat Simple_repeat 4 130 0 6 1106 410 311 15 15 chr12 68411814 68411948 -52845582 - ID_B1 SINE B4 0 224 91 6 1106 213 150 0 24 chr12 68411968 68412009 -52845521 + T-rich Low_complexity Low_complexity 5 44 0 6 1106 259 311 55 11 chr12 68412049 68412140 -52845390 - MLT1A0 LTR MaLR -272 102 8 6 1106 1028 107 22 33 chr12 68412601 68412784 -52844746 + Lx3_Mus LINE L1 6824 7004 -5 6 1106 236 175 16 0 chr12 68412871 68412934 -52844596 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1106 303 316 43 65 chr12 68413390 68413521 -52844009 + L1MEd LINE L1 734 865 -5271 6 1106 3371 150 117 15 chr12 68413521 68414206 -52843324 + RMER6A LTR ERVK 2 756 0 6 1106 303 316 43 65 chr12 68414206 68414260 -52843270 + L1MEd LINE L1 866 915 -5221 6 1106 518 303 115 0 chr12 68415385 68415629 -52841901 + B4A SINE B4 1 272 -20 6 1106 326 318 72 28 chr12 68416138 68416387 -52841143 + L1MEd LINE L1 4500 4759 -1387 6 1106 5138 206 23 35 chr12 68416892 68418223 -52839307 - Lx4B LINE L1 -6 6994 5660 6 1106 581 256 69 14 chr12 68418228 68418446 -52839084 - L1M2 LINE L1 -475 5816 5587 6 1106 293 294 36 24 chr12 68418474 68418641 -52838889 + Lx5 LINE L1 4699 4867 -1013 6 1106 387 0 0 0 chr12 68419385 68419428 -52838102 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1107 484 255 60 38 chr12 68420131 68420171 -52837359 + L1MC LINE L1 4314 4349 -1797 6 1107 3274 159 24 3 chr12 68420171 68420744 -52836786 + RMER4B LTR ERVK 1 585 0 6 1107 484 255 60 38 chr12 68420744 68420968 -52836562 + L1MC LINE L1 4350 4584 -1562 6 1107 5343 33 3 3 chr12 68420968 68421636 -52835894 + L1Md_F2 LINE L1 5934 6582 0 6 1107 336 333 56 0 chr12 68421668 68421830 -52835700 + L1MC1 LINE L1 5854 6024 -309 6 1107 6713 181 52 28 chr12 68423556 68425237 -52832293 + Lx5 LINE L1 5324 7047 -3 6 1107 532 262 196 27 chr12 68425418 68425602 -52831928 + B3 SINE B2 2 216 0 6 1107 200 86 0 28 chr12 68426848 68426884 -52830646 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 6 1107 1394 198 136 30 chr12 68427545 68427914 -52829616 - MTD LTR MaLR 0 419 12 6 1107 206 125 0 20 chr12 68427914 68427963 -52829567 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 6 1107 3459 248 98 66 chr12 68427976 68429026 -52828504 - MTD-int LTR MaLR 0 1258 151 6 1107 1555 41 5 0 chr12 68429026 68429222 -52828308 - L1Md_F2 LINE L1 -12 6570 6374 6 1107 3459 248 98 66 chr12 68429222 68429386 -52828144 - MTD-int LTR MaLR -1108 150 5 6 1107 1409 255 69 10 chr12 68429390 68429782 -52827748 - MTD LTR MaLR 0 419 5 6 1107 308 343 9 9 chr12 68429948 68430057 -52827473 - PB1D10 SINE Alu -8 109 1 6 1107 760 46 0 0 chr12 68430424 68430532 -52826998 + L1_Mus1 LINE L1 6459 6566 -1 6 1107 243 79 0 0 chr12 68430688 68430726 -52826804 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 6 1107 242 312 56 77 chr12 68430737 68431033 -52826497 - MTEb LTR MaLR -26 353 64 6 1107 317 327 52 61 chr12 68432354 68432566 -52824964 + Charlie2a DNA MER1_type 487 696 -2165 6 1107 531 211 56 7 chr12 68432638 68432781 -52824749 + Lx5 LINE L1 6846 6995 -55 6 1107 1540 241 47 26 chr12 68432788 68433175 -52824355 - MTD LTR MaLR -24 395 1 6 1107 23 0 0 0 chr12 68433441 68433464 -52824066 + AT_rich Low_complexity Low_complexity 1 23 0 6 1107 387 0 0 0 chr12 68433603 68433646 -52823884 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1107 762 227 35 0 chr12 68434163 68434335 -52823195 - RMER2 LTR ERV1 -389 178 1 6 1107 737 313 0 15 chr12 68435349 68435550 -52821980 + B4 SINE B4 12 209 -83 6 1107 369 123 0 0 chr12 68435609 68435674 -52821856 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1107 375 305 102 0 chr12 68435896 68436024 -52821506 - MLT1A1 LTR MaLR -264 144 4 6 1107 803 309 5 0 chr12 68436275 68436485 -52821045 + B3 SINE B2 6 216 0 6 1107 225 0 0 0 chr12 68437225 68437250 -52820280 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1107 348 202 184 0 chr12 68437377 68437486 -52820044 - Lx8 LINE L1 -284 7189 7061 6 1107 1032 141 45 6 chr12 68437493 68437671 -52819859 + Lx5 LINE L1 5607 5791 -1259 6 1107 6802 174 43 52 chr12 68437667 68439779 -52817751 + Lx5 LINE L1 4951 7048 -2 6 1107 5862 80 3 0 chr12 68439796 68440570 -52816960 - L1Md_F2 LINE L1 -305 5578 4803 6 1107 7612 68 7 1 chr12 68440577 68441564 -52815966 + L1Md_F2 LINE L1 5588 6580 -2 6 1107 211 320 0 0 chr12 68442929 68442979 -52814551 + B1F1 SINE Alu 1 50 -99 6 1107 256 297 0 13 chr12 68443450 68443525 -52814005 + GA-rich Low_complexity Low_complexity 6 79 0 6 1107 1636 127 147 17 chr12 68444629 68444807 -52812723 - RMER17C LTR ERVK 0 410 235 6 1107 671 48 39 0 chr12 68444807 68444911 -52812619 + (GA)n Simple_repeat Simple_repeat 1 108 0 6 1107 1636 127 147 17 chr12 68444911 68445093 -52812437 - RMER17C LTR ERVK -176 234 4 6 1107 526 276 172 23 chr12 68445147 68445321 -52812209 - B3 SINE B2 0 216 17 6 1107 36 40 0 0 chr12 68446465 68446515 -52811015 + AT_rich Low_complexity Low_complexity 1 50 0 6 1107 696 345 17 17 chr12 68447490 68447779 -52809751 + B4A SINE B4 2 290 -2 6 1107 369 43 0 0 chr12 68447802 68447849 -52809681 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1107 319 284 0 54 chr12 68447958 68448051 -52809479 - B3 SINE B2 0 216 129 6 1107 259 229 0 32 chr12 68448040 68448103 -52809427 - B2_Mm2 SINE B2 -134 61 1 6 1107 826 274 53 0 chr12 68448298 68448506 -52809024 + MTEb LTR MaLR 128 346 -33 6 1107 207 188 62 12 chr12 68448515 68448596 -52808934 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 1107 1201 78 6 6 chr12 68449068 68449248 -52808282 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1107 878 106 6 18 chr12 68449730 68449893 -52807637 + Lx LINE L1 6494 6654 0 6 1107 339 248 70 46 chr12 68449909 68450096 -52807434 + L1MEc LINE L1 2083 2331 -4084 6 1107 255 255 2 115 chr12 68450872 68451036 -52806494 - L1MC3 LINE L1 -929 7066 6898 6 1107 225 0 0 0 chr12 68451038 68451063 -52806467 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1107 306 305 67 19 chr12 68451269 68451495 -52806035 - L1MC LINE L1 -1276 4870 4629 6 1107 664 282 142 32 chr12 68451573 68452183 -52805347 - L1MC LINE L1 -913 5233 4559 6 1107 252 143 0 0 chr12 68452471 68452513 -52805017 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 6 1107 192 127 270 0 chr12 68452719 68452782 -52804748 - L2 LINE L2 -1288 2131 2052 6 1107 219 339 26 26 chr12 68453194 68453309 -52804221 + PB1 SINE Alu 13 127 0 6 1107 2343 161 55 0 chr12 68453610 68454050 -52803480 - Lx2 LINE L1 0 6997 6534 6 1107 275 184 0 0 chr12 68454302 68454351 -52803179 - Lx9 LINE L1 -192 7452 7404 6 1107 1045 269 23 20 chr12 68454373 68454676 -52802854 + Lx9 LINE L1 7107 7410 -234 6 1107 236 287 67 42 chr12 68454948 68455068 -52802462 + MLT1A0 LTR MaLR 3 125 -240 6 1107 370 280 5 0 chr12 68455074 68455177 -52802353 - MTEb LTR MaLR -273 106 1 6 1107 477 90 0 0 chr12 68455325 68455392 -52802138 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1107 23 0 0 0 chr12 68456289 68456312 -52801218 + AT_rich Low_complexity Low_complexity 1 23 0 6 1107 475 92 23 0 chr12 68456321 68456408 -52801122 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 1107 540 214 97 22 chr12 68456651 68456785 -52800745 + B1_Mur4 SINE Alu 4 147 -3 6 1107 596 84 0 122 chr12 68456793 68456997 -52800533 + GA-rich Low_complexity Low_complexity 1 179 0 6 1107 4493 42 2 11 chr12 68460036 68460596 -52796934 - L1Md_F2 LINE L1 -16 6566 6012 6 1107 7299 38 0 0 chr12 68460623 68461495 -52796035 + L1Md_A LINE L1 5711 6582 0 6 1107 983 251 74 96 chr12 68461674 68462133 -52795397 - RLTR12B LTR ERVK -30 498 50 6 1107 1472 311 87 15 chr12 68462209 68462820 -52794710 - Lx8 LINE L1 -182 7291 6637 6 1107 192 361 117 56 chr12 68462944 68463123 -52794407 - MIRb SINE MIR -23 245 56 6 1107 304 45 43 29 chr12 68463660 68463729 -52793801 + (TTTTTG)n Simple_repeat Simple_repeat 3 72 0 6 1107 427 326 128 10 chr12 68463961 68464156 -52793374 + ID_B1 SINE B4 1 218 -6 6 1107 1526 222 172 42 chr12 68464361 68464575 -52792955 + RMER20B LTR ERVK 56 322 -305 6 1107 225 0 0 0 chr12 68464575 68464600 -52792930 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1107 1526 222 172 42 chr12 68464600 68464856 -52792674 + RMER20B LTR ERVK 323 586 -41 6 1107 3428 43 3 0 chr12 68464856 68465336 -52792194 - L1Md_F2 LINE L1 -645 5937 5457 6 1107 5058 68 0 0 chr12 68465337 68466018 -52791512 + L1Md_F2 LINE L1 5932 6582 0 6 1107 2252 85 6 6 chr12 68466025 68466345 -52791185 + L1_Mus3 LINE L1 6317 6636 -2 6 1107 838 169 87 0 chr12 68466724 68466896 -52790634 - Lx2A1 LINE L1 -6 7002 6816 6 1107 292 359 61 20 chr12 68467619 68467767 -52789763 + B3A SINE B2 1 154 -44 6 1107 519 304 37 26 chr12 68468452 68468641 -52788889 + B3A SINE B2 8 198 0 6 1107 24 32 0 0 chr12 68469130 68469161 -52788369 + AT_rich Low_complexity Low_complexity 1 31 0 6 1107 216 0 0 0 chr12 68469576 68469600 -52787930 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1107 2427 189 151 17 chr12 68469658 68469926 -52787604 + RMER6C LTR ERVK 21 352 -338 6 1107 531 0 0 0 chr12 68469926 68469985 -52787545 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1107 2427 189 151 17 chr12 68469985 68470304 -52787226 + RMER6C LTR ERVK 353 687 -3 6 1107 362 271 61 121 chr12 68470500 68470879 -52786651 - RLTR15 LTR ERVK -231 297 22 6 1107 2293 187 19 10 chr12 68471199 68471614 -52785916 + MTC LTR MaLR 1 419 -2 6 1107 462 165 0 57 chr12 68471909 68472031 -52785499 - Lx7 LINE L1 -98 7598 7484 6 1107 405 0 0 0 chr12 68472272 68472317 -52785213 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1107 886 255 10 19 chr12 68472914 68473122 -52784408 - B3 SINE B2 -10 206 1 7 1107 1318 309 76 47 chr12 68473734 68474484 -52783046 - Lx9 LINE L1 -106 7538 6767 7 1107 564 272 63 87 chr12 68474501 68474916 -52782614 + RLTR12B LTR ERVK 1 321 -247 7 1107 498 254 23 23 chr12 68475073 68475206 -52782324 - Lx9 LINE L1 -1670 5974 5842 7 1107 23 86 0 0 chr12 68475408 68475466 -52782064 + AT_rich Low_complexity Low_complexity 1 58 0 7 1107 756 180 102 18 chr12 68475765 68475991 -52781539 - L1_Rod LINE L1 -4034 1813 1569 7 1107 546 351 62 6 chr12 68476036 68476484 -52781046 + Lx9 LINE L1 7034 7637 -7 7 1107 208 189 38 0 chr12 68476490 68476543 -52780987 + GA-rich Low_complexity Low_complexity 2 56 0 7 1107 208 139 28 0 chr12 68476761 68476797 -52780733 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1107 25 0 0 0 chr12 68476819 68476844 -52780686 + AT_rich Low_complexity Low_complexity 1 25 0 7 1107 688 302 15 0 chr12 68476844 68477046 -52780484 + MTE2b LTR MaLR 16 220 -159 7 1107 642 219 80 0 chr12 68477284 68477421 -52780109 + MTE2b LTR MaLR 181 328 -51 7 1107 2171 34 0 11 chr12 68477421 68477686 -52779844 + L1Md_F3 LINE L1 6292 6553 -31 7 1107 356 103 17 0 chr12 68477686 68477744 -52779786 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1107 323 308 73 34 chr12 68478215 68478393 -52779137 - L1M5 LINE L1 -364 5800 5616 7 1107 245 198 48 24 chr12 68478458 68478541 -52778989 - L1M5 LINE L1 -684 5494 5410 7 1107 378 0 0 0 chr12 68478723 68478765 -52778765 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 1107 23 0 0 0 chr12 68479502 68479525 -52778005 + AT_rich Low_complexity Low_complexity 1 23 0 7 1107 391 336 42 63 chr12 68479525 68479668 -52777862 + B1F SINE Alu 1 140 -9 7 1107 680 302 43 6 chr12 68479788 68480065 -52777465 - MLT2C1 LTR ERVL -163 301 3 7 1107 1029 83 0 0 chr12 68480160 68480305 -52777225 + (GGAA)n Simple_repeat Simple_repeat 2 146 0 7 1107 292 268 14 0 chr12 68480711 68480782 -52776748 + ID_B1 SINE B4 81 152 -72 7 1107 764 234 0 0 chr12 68480782 68480923 -52776607 + B1F2 SINE Alu 1 141 -8 7 1107 183 42 0 0 chr12 68481458 68481482 -52776048 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1107 5089 86 9 0 chr12 68481502 68482504 -52775026 - L1_Mus1 LINE L1 -423 6144 5135 7 1107 3052 82 2 2 chr12 68482507 68482911 -52774619 + L1_Mus1 LINE L1 6164 6567 0 7 1107 23 68 0 0 chr12 68483415 68483459 -52774071 + AT_rich Low_complexity Low_complexity 1 44 0 7 1107 6689 106 50 17 chr12 68483484 68484786 -52772744 + Lx LINE L1 5292 6647 -7 7 1107 486 28 0 40 chr12 68484835 68484910 -52772620 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1107 541 309 134 5 chr12 68485054 68485278 -52772252 + Lx8 LINE L1 7066 7318 -155 7 1107 270 310 29 73 chr12 68485522 68485658 -52771872 + RMER10B LTR ERVL 269 398 0 7 1107 256 282 6 133 chr12 68485659 68485839 -52771691 + Lx8 LINE L1 7304 7460 -13 7 1107 1423 277 52 35 chr12 68486094 68486494 -52771036 + Lx6 LINE L1 7008 7414 -46 7 1107 21 36 0 0 chr12 68486502 68486530 -52771000 + AT_rich Low_complexity Low_complexity 1 28 0 7 1107 520 335 39 24 chr12 68486530 68486735 -52770795 + ID_B1 SINE B4 3 210 -14 7 1107 725 316 29 23 chr12 68487009 68487355 -52770175 - L1MA4 LINE L1 -377 5923 5576 7 1107 470 98 12 0 chr12 68487358 68487440 -52770090 + (TC)n Simple_repeat Simple_repeat 2 84 0 7 1107 191 154 30 30 chr12 68487473 68487540 -52769990 + GA-rich Low_complexity Low_complexity 6 72 0 7 1107 468 0 0 0 chr12 68487541 68487593 -52769937 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1107 807 46 0 0 chr12 68487593 68487700 -52769830 + (GA)n Simple_repeat Simple_repeat 1 108 0 7 1107 282 418 0 0 chr12 68487712 68487803 -52769727 - B3A SINE B2 -47 151 61 7 1107 2973 49 3 0 chr12 68487803 68488169 -52769361 + L1_Mus1 LINE L1 6199 6565 -2 7 1107 327 172 0 0 chr12 68488225 68488283 -52769247 - B3A SINE B2 -136 62 5 7 1107 599 304 113 57 chr12 68488297 68488484 -52769046 - L1MA4 LINE L1 -2193 3950 3753 7 1107 977 91 0 40 chr12 68488484 68488633 -52768897 + B1_Mm SINE Alu 5 147 0 7 1107 599 304 113 57 chr12 68488633 68489445 -52768085 - L1MA4 LINE L1 -2391 3752 2895 7 1107 244 61 0 0 chr12 68489850 68489883 -52767647 - tRNA-Ile-ATA tRNA tRNA -39 38 6 7 1107 344 94 0 0 chr12 68489883 68489936 -52767594 + L1_Mus2 LINE L1 6512 6564 -2 7 1107 376 331 7 49 chr12 68490196 68490339 -52767191 + B4 SINE B4 87 223 -69 7 1107 1083 65 0 7 chr12 68490523 68490662 -52766868 + B1_Mus2 SINE Alu 1 138 -9 7 1107 216 0 0 0 chr12 68490662 68490686 -52766844 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1107 23 0 0 0 chr12 68491037 68491060 -52766470 + AT_rich Low_complexity Low_complexity 1 23 0 7 1107 222 128 0 0 chr12 68491496 68491535 -52765995 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1107 381 316 29 0 chr12 68493448 68493584 -52763946 + MIR SINE MIR 1 140 -122 7 1107 216 0 0 0 chr12 68493584 68493608 -52763922 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1107 249 289 97 74 chr12 68494078 68494242 -52763288 - MIRb SINE MIR -83 185 2 7 1107 23 0 0 0 chr12 68494522 68494545 -52762985 + AT_rich Low_complexity Low_complexity 1 23 0 7 1107 2602 215 18 60 chr12 68494582 68495236 -52762294 + RMER20B LTR ERVK 1 627 0 7 1107 569 52 13 0 chr12 68496008 68496085 -52761445 + (TC)n Simple_repeat Simple_repeat 1 78 0 7 1107 1370 48 0 5 chr12 68496086 68496293 -52761237 + (TTCC)n Simple_repeat Simple_repeat 1 206 0 7 1107 718 130 8 8 chr12 68496293 68496425 -52761105 + (TTTC)n Simple_repeat Simple_repeat 1 132 0 7 1107 201 307 26 26 chr12 68497374 68497451 -52760079 - MIRc SINE MIR -147 121 45 7 1107 207 0 0 0 chr12 68497730 68497753 -52759777 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1107 240 179 0 60 chr12 68497755 68497838 -52759692 + T-rich Low_complexity Low_complexity 6 83 0 7 1107 210 182 0 22 chr12 68498129 68498174 -52759356 + T-rich Low_complexity Low_complexity 2 45 0 7 1107 2904 45 44 21 chr12 68498451 68498838 -52758692 + MTA_Mm LTR MaLR 1 396 0 7 1107 315 0 0 0 chr12 68499218 68499253 -52758277 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1107 2672 151 158 9 chr12 68499424 68500000 -52757530 + RMER6A LTR ERVK 1 662 -94 7 1107 568 151 0 11 chr12 68500001 68500095 -52757435 + RMER6A LTR ERVK 664 756 0 1 1107 296 333 67 60 chr12 68502828 68502978 -52754552 + MER20 DNA MER1_type 1 151 -68 2 1107 187 171 56 19 chr12 68503006 68503113 -52754417 + (TA)n Simple_repeat Simple_repeat 2 112 0 3 1107 278 285 43 74 chr12 68503397 68503560 -52753970 - L1M5 LINE L1 -548 5625 5468 4 1107 298 263 107 39 chr12 68503879 68503982 -52753548 + MTE2a LTR MaLR 3 112 -267 5 1107 478 271 193 0 chr12 68504026 68504192 -52753338 + MTE2a LTR MaLR 182 379 0 5 1107 1197 96 27 0 chr12 68504396 68504584 -52752946 + L1Md_F2 LINE L1 6387 6579 -3 6 1107 549 344 97 42 chr12 68505027 68505300 -52752230 - L1M5 LINE L1 -815 5331 5050 4 1107 232 27 54 0 chr12 68505300 68505337 -52752193 + (TA)n Simple_repeat Simple_repeat 2 40 0 7 1107 549 344 97 42 chr12 68505337 68505571 -52751959 - L1M5 LINE L1 -1097 5049 4797 4 1107 870 10 0 0 chr12 68505571 68505670 -52751860 + (CA)n Simple_repeat Simple_repeat 2 100 0 8 1107 549 344 97 42 chr12 68505670 68505726 -52751804 - L1M5 LINE L1 -1350 4796 4736 4 1107 1416 252 118 71 chr12 68506701 68507360 -52750170 - RMER6C LTR ERVK 0 690 1 9 1107 420 20 0 0 chr12 68507470 68507519 -52750011 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1107 295 399 62 5 chr12 68507918 68508112 -52749418 - MLT1G LTR MaLR -124 467 263 1 1107 5928 34 38 15 chr12 68508152 68508899 -52748631 - L1Md_F3 LINE L1 -1 6583 5820 1 1107 299 333 20 117 chr12 68508915 68508989 -52748541 + Lx8 LINE L1 7111 7167 -306 1 1107 968 111 28 7 chr12 68508989 68509134 -52748396 - B1_Mus1 SINE Alu 0 148 1 1 1107 299 333 20 117 chr12 68509134 68509271 -52748259 + Lx8 LINE L1 7168 7301 -172 1 1107 180 0 0 0 chr12 68509271 68509291 -52748239 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1107 299 333 20 117 chr12 68509291 68509377 -52748153 + Lx8 LINE L1 7302 7380 -93 1 1107 305 316 0 0 chr12 68510630 68510706 -52746824 - ID4_ SINE ID -7 76 1 1 1107 22 70 0 0 chr12 68510804 68510847 -52746683 + AT_rich Low_complexity Low_complexity 1 43 0 1 1107 460 268 0 9 chr12 68511354 68511467 -52746063 + MTC LTR MaLR 310 421 0 1 1107 183 100 0 0 chr12 68512506 68512536 -52744994 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1107 226 260 67 157 chr12 68512609 68512787 -52744743 + RLTR21 LTR ERVK 1082 1243 -329 2 1107 2310 158 177 8 chr12 68512901 68513387 -52744143 - RMER6A LTR ERVK -29 727 160 2 1107 346 102 0 0 chr12 68513386 68513435 -52744095 - RMER6A LTR ERVK -412 49 1 2 1107 312 27 0 0 chr12 68513450 68513487 -52744043 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 1107 22 0 0 0 chr12 68513739 68513761 -52743769 + AT_rich Low_complexity Low_complexity 1 22 0 2 1107 721 251 102 25 chr12 68513946 68514220 -52743310 - L1MA4 LINE L1 -308 5992 5698 2 1107 855 313 51 4 chr12 68514259 68514493 -52743037 + MTD LTR MaLR 131 375 -44 2 1107 2102 282 50 103 chr12 68514665 68515740 -52741790 - RMER1A Other Other -12 1018 1 2 1107 280 21 0 78 chr12 68516344 68516395 -52741135 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1107 537 80 0 0 chr12 68517210 68517285 -52740245 + (TATG)n Simple_repeat Simple_repeat 2 76 0 2 1107 24 67 0 0 chr12 68518086 68518131 -52739399 + AT_rich Low_complexity Low_complexity 1 45 0 2 1107 227 270 30 10 chr12 68518316 68518417 -52739113 - L1MCa LINE L1 -5148 1360 1258 3 1107 29 60 0 0 chr12 68518636 68518686 -52738844 + AT_rich Low_complexity Low_complexity 1 50 0 3 1107 212 196 32 21 chr12 68519087 68519181 -52738349 + (TTAA)n Simple_repeat Simple_repeat 4 98 0 3 1107 21 36 0 0 chr12 68519630 68519658 -52737872 + AT_rich Low_complexity Low_complexity 1 28 0 3 1107 222 171 0 0 chr12 68520016 68520057 -52737473 + (CATA)n Simple_repeat Simple_repeat 4 44 0 3 1107 5355 84 24 0 chr12 68520549 68521297 -52736233 + Lx3_Mus LINE L1 6078 6843 -166 3 1107 204 125 0 0 chr12 68521297 68521329 -52736201 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1107 1907 241 52 32 chr12 68521976 68522481 -52735049 + RLTR12B LTR ERVK 1 515 -13 3 1107 332 385 139 26 chr12 68523450 68524106 -52733424 + L2 LINE L2 2117 2846 -573 3 1107 1711 235 19 28 chr12 68524118 68524477 -52733053 + ORR1D1 LTR MaLR 1 356 -18 3 1107 21 107 0 0 chr12 68524488 68524572 -52732958 + AT_rich Low_complexity Low_complexity 1 84 0 4 1107 412 288 36 50 chr12 68525196 68525335 -52732195 + Lx8 LINE L1 7154 7290 -183 4 1107 526 246 39 33 chr12 68525499 68525680 -52731850 + Lx7 LINE L1 7515 7696 0 4 1107 410 246 30 76 chr12 68526948 68527080 -52730450 - MER58B DNA MER1_type -37 304 179 4 1107 2208 75 11 40 chr12 68529328 68529676 -52727854 + RLTR10 LTR ERVK 1 338 -52 4 1107 1719 125 4 7 chr12 68529741 68530015 -52727515 - Lx LINE L1 -6 6648 6376 4 1107 933 76 0 0 chr12 68530041 68530173 -52727357 - L1_Mus2 LINE L1 0 6566 6435 4 1107 546 140 0 8 chr12 68530189 68530294 -52727236 + Lx LINE L1 6266 6347 -307 4 1107 1228 87 10 46 chr12 68530475 68530669 -52726861 - L1_Mus3 LINE L1 -41 6597 6411 4 1107 1303 191 72 19 chr12 68530779 68531168 -52726362 - BGLII_B LTR ERVK -10 412 2 4 1107 484 286 87 0 chr12 68531168 68531293 -52726237 + B1_Mur1 SINE Alu 9 144 -5 5 1107 3305 79 0 0 chr12 68531909 68532341 -52725189 - L1_Mus2 LINE L1 0 6566 6135 5 1107 823 120 6 65 chr12 68532520 68532689 -52724841 + Lx3B LINE L1 6810 6968 -5 5 1107 29583 28 0 0 chr12 68532859 68537069 -52720461 - L1Md_T LINE L1 0 6582 2372 5 1107 393 70 0 0 chr12 68537110 68537167 -52720363 + (TCTCTG)n Simple_repeat Simple_repeat 6 62 0 5 1107 226 343 0 0 chr12 68537994 68538061 -52719469 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 5 1107 182 184 132 0 chr12 68538063 68538101 -52719429 + L2a LINE L2 3297 3339 -87 5 1107 333 0 0 0 chr12 68538441 68538478 -52719052 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1107 391 236 70 8 chr12 68538480 68538608 -52718922 - Lx9 LINE L1 -169 7475 7340 5 1107 266 281 0 33 chr12 68538619 68538711 -52718819 - Lx9 LINE L1 -396 7248 7160 5 1107 27 29 0 0 chr12 68538777 68538811 -52718719 + AT_rich Low_complexity Low_complexity 1 34 0 5 1107 8086 146 25 27 chr12 68539238 68540732 -52716798 + L1_Mur1 LINE L1 4055 5544 -342 6 1107 591 15 0 0 chr12 68540736 68540804 -52716726 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1107 37 0 0 0 chr12 68542567 68542604 -52714926 + AT_rich Low_complexity Low_complexity 1 37 0 6 1107 277 299 48 87 chr12 68542612 68542923 -52714607 - L1MA5 LINE L1 -402 5898 5600 6 1107 4371 88 25 2 chr12 68542936 68543549 -52713981 - L1_Mus4 LINE L1 -1 6635 6009 6 1107 4729 171 16 21 chr12 68543549 68544448 -52713082 + L1_Mm LINE L1 4602 5495 -388 6 1107 2065 179 85 0 chr12 68544454 68544867 -52712663 - L1_Mur3 LINE L1 -863 5017 4570 6 1107 2766 264 49 108 chr12 68544929 68546220 -52711310 + RMER1A Other Other 25 1015 -15 6 1107 480 111 133 0 chr12 68546218 68546308 -52711222 - L1_Mur3 LINE L1 -1295 4585 4484 6 1107 1204 176 135 41 chr12 68546349 68546796 -52710734 - RMER6C LTR ERVK -8 682 1 6 1107 316 132 0 1 chr12 68546800 68546869 -52710661 - L1_Mur3 LINE L1 -1402 4478 4411 6 1107 500 226 91 125 chr12 68546899 68547164 -52710366 - RLTR25A LTR ERVK -54 974 619 7 1107 1136 210 32 209 chr12 68547140 68547346 -52710184 - ORR1A3-int LTR MaLR -1000 963 659 7 1107 1233 173 59 63 chr12 68547346 68547599 -52709931 - MT2B LTR ERVL -314 287 36 7 1107 1136 210 32 209 chr12 68547599 68547705 -52709825 - ORR1A3-int LTR MaLR -1000 658 499 7 1107 1866 187 55 146 chr12 68547628 68548190 -52709340 - RLTR25A LTR ERVK -580 523 13 7 1107 601 97 0 11 chr12 68548196 68548290 -52709240 - L1_Mur3 LINE L1 -1468 4412 4320 7 1107 505 164 45 0 chr12 68548285 68548418 -52709112 - L1_Mur3 LINE L1 -4058 1822 1679 7 1107 2254 85 16 6 chr12 68548418 68548739 -52708791 - L1_Mus1 LINE L1 0 6567 6244 7 1108 250 115 39 0 chr12 68551095 68551147 -52706383 + (TA)n Simple_repeat Simple_repeat 1 54 0 7 1108 1191 40 0 0 chr12 68551713 68551862 -52705668 + (GGAA)n Simple_repeat Simple_repeat 3 151 0 7 1108 3000 91 11 11 chr12 68552176 68552619 -52704911 - L1Md_F2 LINE L1 0 6582 6140 7 1108 2332 93 3 0 chr12 68552619 68552940 -52704590 + L1Md_F2 LINE L1 5818 6139 -443 7 1108 949 100 64 12 chr12 68553110 68553274 -52704256 - L1_Mus3 LINE L1 -8 6630 6457 7 1108 3691 32 9 0 chr12 68553274 68553706 -52703824 - RLTR10C LTR ERVK 0 436 1 7 1108 8095 31 0 0 chr12 68553713 68554642 -52702888 - MMERVK10C-int LTR ERVK -7 7574 6646 8 1108 35919 38 1 0 chr12 68554628 68559570 -52697960 - MMERVK10C-int LTR ERVK -1771 5810 870 8 1108 1457 79 36 3 chr12 68559568 68559870 -52697660 - MMERVK10C-int LTR ERVK -7182 399 1 8 1108 2918 30 185 0 chr12 68559870 68560238 -52697292 - RLTR10C LTR ERVK 0 436 1 8 1108 28026 138 31 8 chr12 68560238 68566155 -52691375 - L1_Mus4 LINE L1 -174 6462 375 8 1108 239 321 0 0 chr12 68566953 68567006 -52690524 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 8 1108 2629 214 33 5 chr12 68567581 68568238 -52689292 - Lx4B LINE L1 -331 6727 5959 8 1108 590 233 51 19 chr12 68568238 68568452 -52689078 + Lx4B LINE L1 6748 7054 -4 8 1108 994 328 102 13 chr12 68570140 68570591 -52686939 + Lx8 LINE L1 6283 6773 -700 8 1108 501 237 119 0 chr12 68570603 68570721 -52686809 - RLTR21 LTR ERVK -4 1568 1437 8 1108 4904 211 45 46 chr12 68570744 68571250 -52686280 - RMER12B LTR ERVK -194 1210 688 8 1108 2138 144 0 9 chr12 68571250 68571580 -52685950 + ORR1A2 LTR MaLR 1 327 0 8 1108 4904 211 45 46 chr12 68571580 68572284 -52685246 - RMER12B LTR ERVK -717 687 1 8 1108 505 297 45 0 chr12 68572289 68572444 -52685086 + Lx8 LINE L1 6806 6967 -506 8 1108 1363 253 57 52 chr12 68572567 68572988 -52684542 - RLTR23 LTR ERV1 0 430 8 8 1108 303 75 0 0 chr12 68573617 68573657 -52683873 + Lx3C LINE L1 6244 6283 -693 8 1108 543 102 0 0 chr12 68573765 68573853 -52683677 + (CA)n Simple_repeat Simple_repeat 1 88 0 9 1108 33 56 0 0 chr12 68573853 68573907 -52683623 + AT_rich Low_complexity Low_complexity 1 54 0 9 1108 21 0 0 0 chr12 68575440 68575461 -52682069 + AT_rich Low_complexity Low_complexity 1 21 0 9 1108 321 26 0 0 chr12 68575523 68575561 -52681969 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 9 1108 22 0 0 0 chr12 68575611 68575633 -52681897 + AT_rich Low_complexity Low_complexity 1 22 0 9 1108 3652 221 43 120 chr12 68575633 68576101 -52681429 - Lx LINE L1 -6 6975 6510 9 1108 253 24 73 0 chr12 68576101 68576142 -52681388 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 9 1108 7075 142 33 14 chr12 68576142 68578216 -52679314 - Lx LINE L1 -8 6646 4557 9 1108 2326 117 6 6 chr12 68578199 68578542 -52678988 - Lx LINE L1 -474 6507 6165 9 1108 198 0 0 0 chr12 68578542 68578564 -52678966 + (TTTCC)n Simple_repeat Simple_repeat 1 22 0 9 1108 1266 90 0 0 chr12 68578566 68578744 -52678786 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 9 1108 33 43 0 0 chr12 68579034 68579081 -52678449 + AT_rich Low_complexity Low_complexity 1 47 0 9 1108 22 0 0 0 chr12 68579359 68579381 -52678149 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 842 185 0 11 chr12 68579632 68579812 -52677718 + CT-rich Low_complexity Low_complexity 3 180 0 1 1108 415 363 42 42 chr12 68580188 68580473 -52677057 - MTE-int LTR MaLR -56 1524 1240 1 1108 200 103 0 49 chr12 68581045 68581086 -52676444 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1108 1296 164 9 0 chr12 68581087 68581313 -52676217 - Lx2 LINE L1 -1 6996 6769 1 1108 498 17 0 0 chr12 68581316 68581375 -52676155 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1108 426 324 127 25 chr12 68581420 68581632 -52675898 - B4A SINE B4 -10 282 49 1 1108 727 260 75 0 chr12 68581762 68581962 -52675568 - B3 SINE B2 0 216 2 1 1108 3598 52 0 0 chr12 68583810 68584256 -52673274 + L1Md_F3 LINE L1 5141 5586 -297 1 1108 8345 42 0 0 chr12 68584256 68585254 -52672276 + L1Md_F3 LINE L1 5587 6584 0 1 1108 249 57 0 0 chr12 68585292 68585327 -52672203 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1108 250 200 17 0 chr12 68585539 68585599 -52671931 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1108 4989 32 0 2 chr12 68586195 68586785 -52670745 + L1Md_T LINE L1 5993 6581 -1 1 1108 333 0 0 0 chr12 68587192 68587229 -52670301 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1 1108 323 333 17 51 chr12 68587237 68587286 -52670244 - ID_B1 SINE B4 -21 203 158 1 1108 1797 203 8 16 chr12 68587286 68587656 -52669874 + ORR1B2 LTR MaLR 1 367 0 1 1108 323 333 17 51 chr12 68587656 68587723 -52669807 - ID_B1 SINE B4 -67 157 91 1 1108 1003 197 27 31 chr12 68589043 68589268 -52668262 - URR1B DNA MER1_type -1 224 1 1 1108 7067 89 29 27 chr12 68589437 68590072 -52667458 - L1_Mus4 LINE L1 -3 6633 6008 1 1108 207 0 0 0 chr12 68590072 68590095 -52667435 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1108 822 125 0 0 chr12 68590098 68590218 -52667312 - 5S rRNA rRNA -1 120 1 1 1108 7067 101 34 20 chr12 68590218 68590770 -52666760 - L1_Mus4 LINE L1 -629 6007 5439 1 1108 331 293 17 25 chr12 68591151 68591270 -52666260 + CR1_Mam LINE CR1 884 1001 -1203 1 1108 531 112 0 0 chr12 68591695 68591784 -52665746 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1108 213 39 0 0 chr12 68592477 68592503 -52665027 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1108 357 227 30 36 chr12 68593945 68594052 -52663478 - B1_Mus2 SINE Alu -1 146 1 1 1108 22 70 0 0 chr12 68594074 68594117 -52663413 + AT_rich Low_complexity Low_complexity 1 43 0 1 1108 201 253 22 22 chr12 68594121 68594210 -52663320 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 1108 2923 183 35 108 chr12 68594676 68595004 -52662526 + RMER6C LTR ERVK 2 326 -364 1 1108 3671 78 14 2 chr12 68595004 68595506 -52662024 + L1Md_F2 LINE L1 6065 6572 -10 1 1108 4056 73 7 4 chr12 68595508 68595825 -52661705 + L1Md_F2 LINE L1 6028 6346 -236 1 1108 195 42 0 0 chr12 68595825 68595849 -52661681 + (CCA)n Simple_repeat Simple_repeat 2 25 0 1 1108 4056 73 7 4 chr12 68595849 68596084 -52661446 + L1Md_F2 LINE L1 6347 6581 -1 1 1108 2923 183 35 108 chr12 68596084 68596495 -52661035 + RMER6C LTR ERVK 327 690 0 1 1108 25 31 0 0 chr12 68596796 68596828 -52660702 + AT_rich Low_complexity Low_complexity 1 32 0 1 1108 234 0 0 0 chr12 68596855 68596881 -52660649 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1108 1095 86 0 0 chr12 68596881 68597020 -52660510 - B1_Mus1 SINE Alu -8 140 2 1 1108 993 326 53 29 chr12 68597271 68597612 -52659918 - ORR1D2 LTR MaLR -19 351 3 1 1108 180 0 0 0 chr12 68598685 68598705 -52658825 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1108 7190 94 36 6 chr12 68598706 68599774 -52657756 + Lx3_Mus LINE L1 5909 7008 -1 1 1108 190 0 32 32 chr12 68600048 68600079 -52657451 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1108 2468 177 38 4 chr12 68600701 68600771 -52656759 - L1_Mus1 LINE L1 -1 6566 6497 1 1108 207 0 0 0 chr12 68600771 68600794 -52656736 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1108 2468 177 38 4 chr12 68600794 68601221 -52656309 - L1_Mus1 LINE L1 -71 6496 6054 1 1108 3565 124 107 13 chr12 68601221 68601327 -52656203 - Lx3C LINE L1 -575 6401 6301 1 1108 4324 78 5 68 chr12 68601327 68601984 -52655546 - L1_Mus2 LINE L1 0 6566 5952 1 1108 3565 124 107 13 chr12 68601984 68602313 -52655217 - Lx3C LINE L1 -676 6300 5912 1 1108 459 0 0 0 chr12 68602313 68602364 -52655166 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1108 3565 124 107 13 chr12 68602364 68602556 -52654974 - Lx3C LINE L1 -1065 5911 5715 1 1108 1831 150 135 11 chr12 68602549 68602913 -52654617 + Lx3C LINE L1 6555 6963 -13 1 1108 180 200 0 0 chr12 68604702 68604742 -52652788 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1108 601 299 62 5 chr12 68605198 68605393 -52652137 - B3 SINE B2 -7 209 4 1 1108 683 206 0 6 chr12 68605759 68605940 -52651590 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1108 360 273 21 64 chr12 68605943 68606178 -52651352 - Lx9 LINE L1 -128 7516 7292 1 1108 2040 80 4 4 chr12 68606552 68606828 -52650702 - L1Md_F2 LINE L1 -11 6571 6296 1 1108 635 234 0 0 chr12 68606828 68606965 -52650565 - L1Md_F LINE L1 -6000 519 383 1 1108 1711 150 8 11 chr12 68606965 68607343 -52650187 - L1VL1 LINE L1 -6019 403 1 1 1108 21 57 0 0 chr12 68607344 68607379 -52650151 + AT_rich Low_complexity Low_complexity 1 35 0 1 1108 31 44 0 0 chr12 68609173 68609218 -52648312 + AT_rich Low_complexity Low_complexity 1 45 0 1 1108 463 278 46 53 chr12 68609286 68609567 -52647963 - Lx9 LINE L1 -51 7593 7315 1 1108 21 36 0 0 chr12 68611677 68611705 -52645825 + AT_rich Low_complexity Low_complexity 1 28 0 1 1108 411 21 0 0 chr12 68612326 68612374 -52645156 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1108 430 302 8 8 chr12 68612556 68612686 -52644844 - B1_Mur1 SINE Alu -19 130 1 1 1108 497 333 14 19 chr12 68612912 68613120 -52644410 - B3 SINE B2 -9 207 1 1 1108 227 191 0 0 chr12 68613341 68613383 -52644147 + GA-rich Low_complexity Low_complexity 1 42 0 1 1108 2190 223 56 10 chr12 68613384 68613992 -52643538 - L1_Mur3 LINE L1 -1459 4421 3786 1 1108 2599 234 134 34 chr12 68613989 68615038 -52642492 - L1_Mur3 LINE L1 -3012 2868 1715 1 1108 8013 82 1 3 chr12 68615085 68616850 -52640680 - L1Md_F2 LINE L1 0 6582 4824 1 1108 3010 73 43 0 chr12 68616850 68617272 -52640258 + L1_Mm LINE L1 4097 4536 -1347 1 1108 1115 241 39 81 chr12 68617259 68617818 -52639712 - L1_Mur3 LINE L1 -4150 1730 1195 1 1108 1756 184 34 132 chr12 68617843 68618107 -52639423 - RMER6C LTR ERVK -104 586 342 1 1108 441 0 0 0 chr12 68618107 68618156 -52639374 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1108 1756 184 34 132 chr12 68618156 68618428 -52639102 - RMER6C LTR ERVK -349 341 103 1 1108 269 336 42 7 chr12 68618900 68619044 -52638486 - L1_Mur3 LINE L1 -6584 1144 996 1 1108 189 0 0 0 chr12 68619050 68619071 -52638459 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1108 3935 79 11 2 chr12 68619183 68619728 -52637802 - L1_Mus3 LINE L1 0 6638 6089 1 1108 1026 101 0 0 chr12 68619792 68619931 -52637599 - MTA_Mm LTR MaLR 0 396 258 1 1108 1691 59 0 0 chr12 68619925 68620144 -52637386 + ORR1A1-int LTR MaLR 1187 1405 -387 1 1108 249 222 0 0 chr12 68620146 68620191 -52637339 + tRNA-Leu-TTA tRNA tRNA 42 86 0 1 1108 976 62 7 65 chr12 68620194 68620236 -52637294 - MTB LTR MaLR 0 400 365 1 1108 3512 13 2 0 chr12 68620236 68620631 -52636899 + MTA_Mm LTR MaLR 1 396 0 1 1108 9212 32 2 1 chr12 68620631 68621728 -52635802 + MTA_Mm-int LTR MaLR 1 1098 0 1 1108 3464 18 2 0 chr12 68621728 68622123 -52635407 + MTA_Mm LTR MaLR 1 396 0 1 1108 976 62 7 65 chr12 68622123 68622232 -52635298 - MTB LTR MaLR -36 364 258 1 1108 529 16 0 0 chr12 68622215 68622279 -52635251 + MTB LTR MaLR 209 272 -128 1 1108 268 174 22 0 chr12 68622279 68622325 -52635205 - Lx9 LINE L1 -1240 6404 6358 1 1108 28 79 0 0 chr12 68622379 68622442 -52635088 + AT_rich Low_complexity Low_complexity 1 63 0 1 1108 27 0 0 0 chr12 68624136 68624163 -52633367 + AT_rich Low_complexity Low_complexity 1 27 0 1 1108 23 0 0 0 chr12 68624230 68624253 -52633277 + AT_rich Low_complexity Low_complexity 1 23 0 1 1108 825 72 22 0 chr12 68624434 68624631 -52632899 - L1_Mus1 LINE L1 -487 6080 5800 1 1108 2920 48 3 0 chr12 68624631 68624988 -52632542 + L1_Mus1 LINE L1 6207 6564 -3 1 1108 1423 28 20 0 chr12 68624988 68625738 -52631792 + (GAA)n Simple_repeat Simple_repeat 1 765 0 1 1108 25 0 0 0 chr12 68626009 68626034 -52631496 + AT_rich Low_complexity Low_complexity 1 25 0 1 1108 542 241 15 0 chr12 68626282 68626415 -52631115 - L1MD LINE L1 -2417 3729 3595 1 1108 359 304 8 8 chr12 68626739 68626865 -52630665 - Lx8 LINE L1 -1008 6465 6340 1 1108 582 15 0 0 chr12 68626959 68627026 -52630504 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1108 423 0 0 0 chr12 68627055 68627102 -52630428 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1108 22 56 0 0 chr12 68627213 68627249 -52630281 + AT_rich Low_complexity Low_complexity 1 36 0 1 1108 254 335 51 26 chr12 68627371 68627527 -52630003 + L1_Rod LINE L1 532 691 -6917 1 1108 4270 219 85 14 chr12 68627662 68629274 -52628256 + L1_Rod LINE L1 742 2462 -3385 1 1108 485 298 43 64 chr12 68629266 68629728 -52627802 + L1_Rod LINE L1 3336 3812 -2328 1 1108 1144 246 108 129 chr12 68629730 68630254 -52627276 + L1_Rod LINE L1 4003 4570 -1277 1 1108 393 22 0 0 chr12 68630254 68630300 -52627230 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1108 1144 246 108 129 chr12 68630300 68630596 -52626934 + L1_Rod LINE L1 4571 4806 -1041 1 1108 3492 251 37 33 chr12 68630592 68631642 -52625888 + Lx9 LINE L1 6588 7641 -3 1 1108 26 0 0 0 chr12 68631894 68631920 -52625610 + AT_rich Low_complexity Low_complexity 1 26 0 1 1108 551 316 51 22 chr12 68632181 68632456 -52625074 - Lx9 LINE L1 -686 6958 6676 1 1108 1151 206 82 16 chr12 68633056 68633362 -52624168 - Lx9 LINE L1 -3 7641 7316 1 1108 2911 97 19 17 chr12 68633363 68633781 -52623749 - Lx3_Mus LINE L1 0 7009 6591 1 1108 2477 105 3 0 chr12 68633781 68634144 -52623386 + L1_Mur1 LINE L1 5113 5476 -410 1 1108 38088 24 1 36 chr12 68634145 68636390 -52621140 + Lx3_Mus LINE L1 468 2670 -3213 1 1108 3474 20 2 0 chr12 68636390 68636785 -52620745 - MTA_Mm LTR MaLR 0 396 1 1 1108 9227 29 4 1 chr12 68636785 68637878 -52619652 - MTA_Mm-int LTR MaLR 0 1098 3 1 1108 4248 20 2 24 chr12 68637882 68638386 -52619144 - MT2_Mm LTR ERVL 0 493 1 1 1108 38088 22 1 30 chr12 68638386 68641308 -52616222 + Lx3_Mus LINE L1 2671 5585 -298 1 1108 8668 18 4 0 chr12 68641308 68642300 -52615230 + L1Md_A LINE L1 5587 6582 0 1 1108 38088 72 11 14 chr12 68642300 68643410 -52614120 + Lx3_Mus LINE L1 5586 6579 -430 1 1108 427 267 58 15 chr12 68643464 68643601 -52613929 - Lx9 LINE L1 -358 7286 7144 1 1108 974 298 72 13 chr12 68643689 68644063 -52613467 - Lx8 LINE L1 -9 7464 7069 1 1108 278 339 42 0 chr12 68644892 68645010 -52612520 - L1MEc LINE L1 -6085 315 193 1 1108 334 194 15 0 chr12 68645054 68645121 -52612409 + L1MA4 LINE L1 5819 5886 -414 1 1108 1767 215 56 0 chr12 68646899 68647294 -52610236 + MTC LTR MaLR 5 421 0 1 1108 1160 82 0 0 chr12 68647364 68647511 -52610019 - B1_Mus2 SINE Alu 0 147 1 1 1108 680 146 158 6 chr12 68647562 68647727 -52609803 - Lx4B LINE L1 0 7058 6869 1 1108 21 0 0 0 chr12 68648151 68648172 -52609358 + AT_rich Low_complexity Low_complexity 1 21 0 2 1108 24 0 0 0 chr12 68649266 68649290 -52608240 + AT_rich Low_complexity Low_complexity 1 24 0 2 1108 2547 234 13 5 chr12 68649762 68650385 -52607145 - L1_Mur3 LINE L1 -286 5594 4967 2 1108 1264 181 4 17 chr12 68650387 68650623 -52606907 + RMER4B LTR ERVK 15 247 -338 2 1108 714 173 0 0 chr12 68650631 68650764 -52606766 + CT-rich Low_complexity Low_complexity 3 135 0 2 1108 586 215 189 26 chr12 68650818 68651034 -52606496 + RMER4B LTR ERVK 333 583 -2 2 1108 2748 231 136 17 chr12 68651123 68652545 -52604985 + MurERV4-int LTR ERVK 61 1664 -3596 2 1108 408 310 61 20 chr12 68652557 68652680 -52604850 + MurERV4-int LTR ERVK 1540 1668 -4112 2 1108 342 0 0 0 chr12 68652680 68652718 -52604812 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1108 408 310 61 20 chr12 68652718 68652742 -52604788 + MurERV4-int LTR ERVK 1669 1692 -4088 2 1108 8835 162 67 24 chr12 68652728 68654561 -52602969 + MurERV4-int LTR ERVK 2612 4519 -741 2 1108 207 0 0 0 chr12 68654561 68654584 -52602946 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1108 3379 187 95 53 chr12 68654584 68655290 -52602240 + MurERV4-int LTR ERVK 4520 5259 -1 2 1108 1371 252 98 83 chr12 68655299 68655832 -52601698 + RMER4B LTR ERVK 45 585 0 2 1108 41201 6 0 1 chr12 68655880 68662656 -52594874 - L1Md_A LINE L1 0 6582 1 2 1108 1918 201 74 10 chr12 68662646 68663134 -52594396 - L1_Mur3 LINE L1 -922 4958 4440 2 1108 830 207 99 45 chr12 68663136 68663379 -52594151 + Lx5 LINE L1 5623 5878 -1172 2 1108 2046 257 102 16 chr12 68663376 68663957 -52593573 + Lx6 LINE L1 6795 7425 -35 2 1108 1900 252 65 62 chr12 68663973 68664657 -52592873 + RMER6A LTR ERVK 57 745 -11 2 1108 788 76 0 17 chr12 68664657 68664777 -52592753 + Lx LINE L1 6530 6647 -7 2 1108 1080 90 7 0 chr12 68664788 68664933 -52592597 + B1_Mm SINE Alu 1 146 -1 2 1108 22 0 0 0 chr12 68664982 68665004 -52592526 + AT_rich Low_complexity Low_complexity 1 22 0 2 1108 334 268 144 47 chr12 68665089 68665367 -52592163 - L1MA6 LINE L1 -47 6244 5940 2 1108 438 274 103 0 chr12 68665372 68665489 -52592041 + MTEb LTR MaLR 1 129 -250 2 1108 22 0 0 0 chr12 68665673 68665695 -52591835 + AT_rich Low_complexity Low_complexity 1 22 0 2 1108 240 315 16 143 chr12 68666674 68666800 -52590730 - PB1D10 SINE Alu -5 112 3 2 1108 28 71 0 0 chr12 68667102 68667158 -52590372 + AT_rich Low_complexity Low_complexity 1 56 0 2 1108 1621 236 24 26 chr12 68667288 68667705 -52589825 + RMER5 LTR ERV1 119 534 0 2 1108 190 330 9 48 chr12 68669547 68669652 -52587878 - MIR SINE MIR -40 222 122 2 1108 450 352 0 11 chr12 68670550 68670734 -52586796 - L1MC LINE L1 -695 5638 5457 2 1108 3795 32 2 0 chr12 68671100 68671562 -52585968 - L1_Mm LINE L1 -2955 2928 2466 2 1108 8431 29 3 0 chr12 68671564 68672557 -52584973 + L1Md_T LINE L1 5587 6582 0 2 1108 2287 153 30 10 chr12 68672622 68673025 -52584505 + Lx LINE L1 6243 6653 -1 2 1108 297 228 9 56 chr12 68673402 68673509 -52584021 - Lx9 LINE L1 0 7644 7543 2 1108 895 291 32 32 chr12 68673511 68673849 -52583681 - Lx9 LINE L1 -302 7342 7005 2 1108 7433 85 4 0 chr12 68673867 68674995 -52582535 - L1_Mus2 LINE L1 0 6566 5451 2 1108 7530 97 1 0 chr12 68674996 68676048 -52581482 + L1_Mus2 LINE L1 4388 5440 -443 2 1108 1780 221 87 11 chr12 68676046 68676485 -52581045 - Lx9 LINE L1 -637 7007 6536 2 1108 255 322 117 46 chr12 68676536 68677034 -52580496 + L1MA9 LINE L1 5713 6245 -67 2 1108 3185 246 71 7 chr12 68678053 68678798 -52578732 - Lx6 LINE L1 0 7460 6668 2 1108 6732 113 25 49 chr12 68678798 68680594 -52576936 - L1VL4 LINE L1 -1610 1949 196 2 138 8374 211 52 23 chr12 68680591 68682933 -52574597 - L1_Mur3 LINE L1 -464 5416 3006 2 1109 1891 50 0 4 chr12 68683589 68683828 -52573702 - L1_Mus1 LINE L1 0 6567 6330 2 1109 1624 84 0 50 chr12 68683828 68684066 -52573464 + L1_Mm LINE L1 5341 5566 -317 2 1109 441 379 96 62 chr12 68684916 68685290 -52572240 - LTR16E1 LTR ERVL -114 424 38 2 1109 1008 75 30 0 chr12 68685574 68685707 -52571823 + B1_Mus1 SINE Alu 2 138 -10 2 1109 360 0 0 0 chr12 68685738 68685778 -52571752 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1109 421 346 80 83 chr12 68686343 68687089 -52570441 + L1MC4 LINE L1 7298 8041 -1 2 1109 192 40 0 0 chr12 68687493 68687518 -52570012 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1109 206 136 23 0 chr12 68687518 68687562 -52569968 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1109 203 143 23 23 chr12 68688036 68688079 -52569451 + (TTA)n Simple_repeat Simple_repeat 2 44 0 2 1109 699 12 0 0 chr12 68688729 68688809 -52568721 + (TCC)n Simple_repeat Simple_repeat 3 82 0 2 1109 329 233 0 62 chr12 68689095 68689191 -52568339 + Lx7 LINE L1 7225 7314 -382 2 1109 886 301 81 35 chr12 68689256 68690154 -52567376 - L1_Mur3 LINE L1 -2455 3425 2486 2 1109 1463 249 89 11 chr12 68690201 68690583 -52566947 + MTD LTR MaLR 8 419 0 2 1109 844 297 89 50 chr12 68690601 68690944 -52566586 - L1_Mur3 LINE L1 -3466 2414 2055 2 1109 292 43 21 21 chr12 68690944 68690991 -52566539 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1109 1098 67 0 0 chr12 68690991 68691125 -52566405 - B1_Mm SINE Alu -9 138 5 2 1109 844 297 89 50 chr12 68691125 68691601 -52565929 - L1_Mur3 LINE L1 -3826 2054 1563 2 1109 23 0 0 0 chr12 68691601 68691624 -52565906 + AT_rich Low_complexity Low_complexity 1 23 0 2 1109 209 163 0 20 chr12 68691698 68691748 -52565782 + CT-rich Low_complexity Low_complexity 6 54 0 2 1109 215 225 14 0 chr12 68692407 68692478 -52565052 + (TCCA)n Simple_repeat Simple_repeat 4 75 0 2 1109 496 363 35 65 chr12 68693589 68693819 -52563711 + B4A SINE B4 48 270 -22 2 1109 366 80 0 0 chr12 68693865 68693915 -52563615 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1109 362 69 0 17 chr12 68693915 68693974 -52563556 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1109 240 111 0 0 chr12 68694266 68694302 -52563228 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1109 252 0 0 0 chr12 68694313 68694341 -52563189 + (TTA)n Simple_repeat Simple_repeat 1 28 0 2 1109 1738 123 14 14 chr12 68694341 68694630 -52562900 - L1Md_F2 LINE L1 -23 6559 6271 2 1109 5199 53 2 0 chr12 68694688 68695329 -52562201 - L1_Mus1 LINE L1 0 6567 5926 2 1109 23 54 0 0 chr12 68695436 68695473 -52562057 + AT_rich Low_complexity Low_complexity 1 37 0 2 1109 281 363 75 17 chr12 68696353 68696594 -52560936 - Lx8 LINE L1 -166 7307 7053 2 1109 23 33 0 0 chr12 68696702 68696732 -52560798 + AT_rich Low_complexity Low_complexity 1 30 0 2 1109 2205 116 36 11 chr12 68696770 68697127 -52560403 + Lx LINE L1 6287 6652 -2 2 1109 2572 192 48 9 chr12 68697409 68697949 -52559581 - RMER6D LTR ERVK -159 561 1 2 1109 348 24 0 0 chr12 68698099 68698140 -52559390 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1109 224 224 20 0 chr12 68698144 68698193 -52559337 + GA-rich Low_complexity Low_complexity 1 50 0 2 1109 23 0 0 0 chr12 68698739 68698762 -52558768 + AT_rich Low_complexity Low_complexity 1 23 0 2 1109 1208 261 45 21 chr12 68699299 68699635 -52557895 - ORR1A4 LTR MaLR -2 372 29 2 1109 900 265 45 25 chr12 68699940 68700311 -52557219 + L1MC LINE L1 5219 5598 -735 2 1109 1238 110 21 5 chr12 68700415 68700607 -52556923 + B2_Mm2 SINE B2 1 195 0 2 1109 253 311 54 114 chr12 68700804 68700971 -52556559 - RSINE1 SINE B4 -6 159 3 2 1109 1731 184 50 40 chr12 68701052 68701432 -52556098 + ORR1B1 LTR MaLR 3 386 -8 2 1109 414 39 0 0 chr12 68701814 68701866 -52555664 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1109 991 168 177 5 chr12 68702701 68702904 -52554626 + L1_Mur1 LINE L1 5377 5614 -272 2 1109 2051 257 76 5 chr12 68702899 68703493 -52554037 + Lx2B LINE L1 6361 6996 -4 2 1109 6967 150 60 80 chr12 68703558 68705042 -52552488 - ORR1A4-int LTR MaLR -508 1455 1 2 1109 1811 148 29 13 chr12 68705046 68705362 -52552168 - ORR1A4 LTR MaLR -8 321 1 2 1109 1159 204 94 0 chr12 68705362 68705627 -52551903 + L1_Mur2 LINE L1 5527 5816 -61 2 1109 279 0 0 0 chr12 68705651 68705682 -52551848 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 1109 9478 95 8 15 chr12 68705683 68707457 -52550073 - Lx3A LINE L1 -16 6965 5209 2 1109 1570 42 0 0 chr12 68707457 68707649 -52549881 - MTA_Mm LTR MaLR 0 396 205 2 1109 249 360 10 0 chr12 68708559 68708659 -52548871 + MIRm SINE MIR 66 166 -110 2 1109 248 0 31 0 chr12 68709749 68709781 -52547749 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1109 2366 63 3 0 chr12 68710377 68710678 -52546852 - L1_Mus1 LINE L1 0 6567 6266 2 1109 250 174 0 42 chr12 68710780 68710852 -52546678 + CT-rich Low_complexity Low_complexity 2 70 0 2 1109 1167 107 0 0 chr12 68710862 68711040 -52546490 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2 1109 210 188 78 0 chr12 68711046 68711110 -52546420 + CT-rich Low_complexity Low_complexity 3 71 0 2 1109 970 196 6 0 chr12 68711143 68711306 -52546224 + RLTR18B LTR ERVK 3 166 -346 2 1109 480 35 0 0 chr12 68711680 68711738 -52545792 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1109 2097 212 14 29 chr12 68711804 68712295 -52545235 + RLTR18-int LTR ERVK 4878 5361 0 2 1109 1622 266 58 10 chr12 68712298 68712780 -52544750 + RLTR18B LTR ERVK 4 508 -4 2 1109 764 215 35 6 chr12 68713292 68713465 -52544065 + U2 snRNA snRNA 11 188 0 2 1109 247 104 42 0 chr12 68713539 68713587 -52543943 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1109 237 304 43 21 chr12 68713652 68713746 -52543784 - B4A SINE B4 -194 98 3 2 1109 2833 99 15 92 chr12 68713752 68714274 -52543256 - RLTR45 LTR ERVK 0 482 1 2 1109 957 197 82 0 chr12 68714396 68714604 -52542926 + Lx LINE L1 6428 6652 -2 2 1109 2315 193 85 23 chr12 68714952 68715434 -52542096 + Lx5 LINE L1 6534 7045 -5 2 1109 384 40 0 0 chr12 68715524 68715574 -52541956 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1109 2952 92 12 9 chr12 68717072 68717499 -52540031 - L1_Mus3 LINE L1 -3 6635 6208 2 1109 1695 82 0 0 chr12 68717503 68717722 -52539808 + L1_Mus3 LINE L1 5980 6198 -440 2 1109 375 311 61 82 chr12 68717873 68718167 -52539363 - B4A SINE B4 0 292 5 2 1109 635 139 9 0 chr12 68718410 68718525 -52539005 + (TATG)n Simple_repeat Simple_repeat 1 116 0 2 1109 467 365 83 0 chr12 68718560 68718741 -52538789 - B4A SINE B4 -6 286 91 2 1109 189 0 0 0 chr12 68719249 68719270 -52538260 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1109 5075 110 67 25 chr12 68720861 68721727 -52535803 - RLTR13D6 LTR ERVK 0 902 1 3 1109 521 398 36 21 chr12 68723262 68723542 -52533988 - B4 SINE B4 0 292 9 3 1109 23 86 0 0 chr12 68723689 68723747 -52533783 + AT_rich Low_complexity Low_complexity 1 58 0 3 1109 294 351 22 36 chr12 68723866 68724005 -52533525 + MLT2B5 LTR ERVL 74 210 -391 3 1109 603 40 0 0 chr12 68724013 68724087 -52533443 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 1109 1029 241 21 53 chr12 68724565 68724903 -52532627 + RLTR15 LTR ERVK 1 327 -32 3 1109 180 236 0 33 chr12 68725196 68725288 -52532242 + CT-rich Low_complexity Low_complexity 2 90 0 3 1109 312 226 116 7 chr12 68725369 68725507 -52532023 + Ricksha_c DNA MuDR 1855 2007 -41 3 1109 210 37 0 0 chr12 68725511 68725538 -52531992 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1109 256 336 47 60 chr12 68726082 68726231 -52531299 - LTR16C LTR ERVL -147 342 196 3 1109 317 367 64 25 chr12 68726261 68726543 -52530987 + RMER5 LTR ERV1 40 332 -202 3 1109 3159 112 27 2 chr12 68726705 68727144 -52530386 - Lx LINE L1 -6 6648 6199 3 1109 573 184 33 39 chr12 68727199 68727352 -52530178 - RMER1B Other Other -3 1063 912 3 1109 643 176 0 0 chr12 68727390 68727515 -52530015 + L1Md_F2 LINE L1 301 425 -6191 3 1109 35258 53 1 6 chr12 68727513 68732210 -52525320 + L1Md_F2 LINE L1 928 5586 -297 3 1109 8442 50 2 1 chr12 68732211 68733192 -52524338 + L1Md_F2 LINE L1 5588 6569 -13 3 1109 3242 253 70 35 chr12 68733198 68734299 -52523231 - RMER1A Other Other -165 865 33 3 1109 260 172 17 0 chr12 68734406 68734464 -52523066 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1109 640 315 78 49 chr12 68734481 68734765 -52522765 - B4A SINE B4 0 292 1 3 1109 323 315 71 45 chr12 68734828 68735097 -52522433 - L1MEc LINE L1 -2982 3337 3062 3 1109 323 374 72 6 chr12 68735162 68735329 -52522201 - L1MEc LINE L1 -5105 1295 1118 3 1109 3558 110 70 4 chr12 68735875 68736263 -52521267 + Lx LINE L1 6113 6518 -136 3 1109 225 0 0 0 chr12 68736263 68736288 -52521242 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 3 1109 3558 110 70 4 chr12 68736288 68736401 -52521129 + Lx LINE L1 6519 6645 -9 3 1109 2806 84 3 0 chr12 68736543 68736888 -52520642 - ORR1A1 LTR MaLR 0 346 1 3 1109 22 0 0 0 chr12 68737097 68737119 -52520411 + AT_rich Low_complexity Low_complexity 1 22 0 3 1109 228 336 126 30 chr12 68737707 68737842 -52519688 - MLT1E3 LTR MaLR -100 524 377 3 1109 238 324 0 0 chr12 68737875 68737943 -52519587 + CT-rich Low_complexity Low_complexity 4 71 0 3 1109 1192 63 28 0 chr12 68738757 68738900 -52518630 + B1_Mus2 SINE Alu 1 147 0 3 1109 26 0 0 0 chr12 68739011 68739037 -52518493 + AT_rich Low_complexity Low_complexity 1 26 0 3 1109 3144 54 0 0 chr12 68739218 68739570 -52517960 + IAPEY2_LTR LTR ERVK 3 354 -3 3 1109 9374 133 14 24 chr12 68739570 68741199 -52516331 + IAPEY3-int LTR ERVK 17 1982 -5698 3 1109 3497 76 27 25 chr12 68741176 68741661 -52515869 + IAPEY3-int LTR ERVK 2238 2723 -4957 3 1109 449 52 17 0 chr12 68741629 68741687 -52515843 + IAPEY3-int LTR ERVK 4852 4910 -2770 3 1109 3407 128 20 31 chr12 68741687 68742420 -52515110 + IAPEY3-int LTR ERVK 6907 7581 0 3 1109 3259 42 0 0 chr12 68742420 68742774 -52514756 + IAPEY2_LTR LTR ERVK 1 354 -3 3 1109 218 143 62 31 chr12 68742835 68742900 -52514630 + (TATAA)n Simple_repeat Simple_repeat 2 68 0 3 1109 399 21 0 0 chr12 68743859 68743907 -52513623 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1109 188 167 21 0 chr12 68743964 68744012 -52513518 + GA-rich Low_complexity Low_complexity 1 49 0 3 1109 1067 110 24 6 chr12 68744024 68744189 -52513341 + L1_Mm LINE L1 5268 5435 -448 3 1109 7331 132 27 1 chr12 68744189 68745270 -52512260 + Lx2 LINE L1 5889 6997 0 3 1109 349 237 110 0 chr12 68745270 68745282 -52512248 + L1M5 LINE L1 5474 5485 -709 3 1109 667 284 45 5 chr12 68745486 68745497 -52512033 + ORR1D1 LTR MaLR 169 179 -195 3 1109 222 37 0 0 chr12 68745497 68745524 -52512006 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 1109 667 284 45 5 chr12 68745524 68745710 -52511820 + ORR1D1 LTR MaLR 180 373 -1 3 1109 868 118 0 7 chr12 68746300 68746437 -52511093 - Lx LINE L1 -3 6651 6516 3 1109 21 0 0 0 chr12 68746586 68746607 -52510923 + AT_rich Low_complexity Low_complexity 1 21 0 3 1109 261 194 54 18 chr12 68747107 68747275 -52510255 + (TA)n Simple_repeat Simple_repeat 1 174 0 3 1109 235 246 16 0 chr12 68747297 68747358 -52510172 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 3 1109 5617 73 24 4 chr12 68747400 68748195 -52509335 + RLTR22_Mus LTR ERVK 1 811 -997 3 1109 420 281 68 73 chr12 68748421 68748640 -52508890 + RMER12 LTR ERVK 1101 1318 -4 3 1109 252 0 0 0 chr12 68749757 68749785 -52507745 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1109 327 49 0 0 chr12 68750058 68750099 -52507431 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1109 357 222 49 0 chr12 68750908 68750922 -52506608 + PB1D10 SINE Alu 1 85 -32 3 1109 239 230 79 123 chr12 68750922 68750989 -52506541 + MT2B LTR ERVL 179 238 -363 3 1109 372 22 0 0 chr12 68750989 68751034 -52506496 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1109 239 230 79 123 chr12 68751034 68751053 -52506477 + MT2B LTR ERVL 239 260 -341 3 1109 499 294 0 145 chr12 68751053 68751212 -52506318 + B1F2 SINE Alu 4 139 -10 3 1109 486 206 18 27 chr12 68751260 68751370 -52506160 + B3 SINE B2 3 111 -105 3 1109 315 171 53 79 chr12 68751382 68751458 -52506072 - B4A SINE B4 -127 165 92 3 1109 222 280 108 36 chr12 68751424 68751535 -52505995 - B3A SINE B2 -78 120 2 3 1109 213 39 0 0 chr12 68751555 68751581 -52505949 + (CTG)n Simple_repeat Simple_repeat 1 26 0 3 1109 351 299 28 0 chr12 68751614 68751721 -52505809 - MER89 LTR ERV1 -253 306 197 3 1109 380 219 12 12 chr12 68751699 68751782 -52505748 - MER89 LTR ERV1 -475 84 2 3 1109 331 291 62 26 chr12 68751896 68752009 -52505521 + PB1D10 SINE Alu 1 117 0 3 1109 753 164 16 0 chr12 68752017 68752145 -52505385 + B1_Mur4 SINE Alu 1 130 -20 3 1109 4817 118 47 30 chr12 68752152 68752828 -52504702 + RMER19A LTR ERVK 3 706 -31 3 1109 1203 75 0 0 chr12 68752828 68752975 -52504555 + B1_Mus1 SINE Alu 1 147 -1 3 1109 4817 118 47 30 chr12 68752975 68753021 -52504509 + RMER19A LTR ERVK 707 737 0 3 1109 8290 144 30 5 chr12 68753021 68754329 -52503201 + MurERV4_19-int LTR ERVK 1 1341 -4439 3 1109 3031 77 20 5 chr12 68754914 68755360 -52502170 - MusHAL1 LINE L1 -626 2086 1634 3 1109 4312 140 16 70 chr12 68755360 68756206 -52501324 - RLTR13C2 LTR ERVK -19 1014 1 3 1109 3766 95 29 110 chr12 68756206 68756630 -52500900 - MusHAL1 LINE L1 -1087 1625 1257 3 1109 1198 56 21 0 chr12 68756630 68756774 -52500756 - B1_Mm SINE Alu 0 147 1 3 1109 3766 95 29 110 chr12 68756774 68757050 -52500480 - MusHAL1 LINE L1 -1456 1256 982 3 1109 1535 151 48 0 chr12 68757053 68757305 -52500225 + MurERV4_19-int LTR ERVK 1327 1590 -4190 3 1109 358 115 53 43 chr12 68757311 68757410 -52500120 + RLTR31_Mur LTR ERVK 39 219 -222 3 1109 931 198 33 9 chr12 68757511 68757725 -52499805 + RLTR16 LTR ERVK 234 452 -53 3 1109 1716 103 87 4 chr12 68758636 68758900 -52498630 - RLTR9A LTR ERVK -82 286 1 3 1109 21190 95 46 23 chr12 68760124 68761038 -52496492 - L1_Mus2 LINE L1 0 6566 5579 3 1109 4568 21 0 0 chr12 68761038 68761520 -52496010 + LTRIS_Mm LTR ERV1 1 482 0 3 1109 21190 130 38 9 chr12 68761520 68761633 -52495897 - L1_Mus2 LINE L1 -305 5578 5475 3 1109 4518 10 4 4 chr12 68761633 68762115 -52495415 - LTRIS_Mm LTR ERV1 0 482 1 3 1109 21190 130 38 9 chr12 68762115 68763215 -52494315 - L1_Mus2 LINE L1 -409 5474 4370 3 1109 4457 107 3 36 chr12 68763215 68763857 -52493673 - L1Md_F2 LINE L1 -14 6568 5948 3 1109 21190 130 38 9 chr12 68763857 68765751 -52491779 - L1_Mus2 LINE L1 -1514 4369 2438 3 1109 3302 69 5 2 chr12 68765751 68766146 -52491384 - MTA_Mm LTR MaLR 0 396 1 3 1109 21190 167 88 14 chr12 68766146 68767132 -52490398 - L1_Mus2 LINE L1 -3446 2440 1143 3 1109 3208 59 15 8 chr12 68767132 68767525 -52490005 - MTA_Mm LTR MaLR 0 396 1 3 1109 3156 154 59 62 chr12 68767525 68767575 -52489955 - L1_Mus2 LINE L1 -5474 1142 1099 3 1109 2790 41 0 210 chr12 68767575 68768037 -52489493 - RLTR10B2 LTR ERVK 0 365 1 3 1109 3156 154 59 62 chr12 68768037 68768573 -52488957 - L1_Mus2 LINE L1 -5518 1098 556 3 1109 4945 45 3 14 chr12 68768613 68769196 -52488334 - L1Md_F2 LINE L1 -1 6581 6005 3 1109 5079 100 25 22 chr12 68770257 68770818 -52486712 + RLTR22_Mus LTR ERVK 3 572 -1236 3 1109 5292 116 101 14 chr12 68770818 68771648 -52485882 + RMER17A2 LTR ERVK 1 902 -4 3 1109 5079 100 25 22 chr12 68771648 68771677 -52485853 + RLTR22_Mus LTR ERVK 573 599 -1209 3 1109 1196 131 45 0 chr12 68771677 68771853 -52485677 + B2_Mm1t SINE B2 3 186 -7 3 1109 5079 100 25 22 chr12 68771853 68772062 -52485468 + RLTR22_Mus LTR ERVK 600 805 -1003 3 1109 553 302 31 53 chr12 68772283 68772510 -52485020 + RMER12 LTR ERVK 1101 1322 0 3 1109 273 162 0 0 chr12 68773196 68773264 -52484266 + T-rich Low_complexity Low_complexity 1 68 0 3 1109 1271 61 0 0 chr12 68773267 68773414 -52484116 - B1_Mus2 SINE Alu 0 147 1 3 1109 24 67 0 0 chr12 68773772 68773817 -52483713 + AT_rich Low_complexity Low_complexity 1 45 0 3 1109 28 38 0 19 chr12 68774645 68774670 -52482860 + AT_rich Low_complexity Low_complexity 1 25 0 3 1109 6190 136 58 12 chr12 68774670 68775691 -52481839 - Lx3C LINE L1 -1 6975 5908 3 1109 28 38 0 19 chr12 68775691 68775718 -52481812 + AT_rich Low_complexity Low_complexity 1 27 0 3 1109 1682 254 77 23 chr12 68776519 68777034 -52480496 + RLTR1 LTR ERV1 97 624 0 3 1109 26 50 0 0 chr12 68777246 68777286 -52480244 + AT_rich Low_complexity Low_complexity 1 40 0 3 1109 7367 162 41 15 chr12 68777326 68779137 -52478393 - Lx3C LINE L1 -2 6974 5134 3 1109 522 0 0 0 chr12 68779140 68779198 -52478332 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 3 1109 1068 90 0 0 chr12 68779201 68779345 -52478185 - B1_Mus1 SINE Alu 0 148 5 3 1109 623 288 29 0 chr12 68779441 68779611 -52477919 - B3A SINE B2 -20 178 4 3 1109 2941 54 2 68 chr12 68780064 68780479 -52477051 - RLTR10 LTR ERVK -2 388 1 3 1109 423 279 153 37 chr12 68780709 68781003 -52476527 - MER47B DNA MER2_type -1 365 34 3 1109 1011 68 7 10 chr12 68782964 68783126 -52474404 + L1_Mus2 LINE L1 5917 6080 -487 3 1109 326 306 0 12 chr12 68784408 68784494 -52473036 - L2a LINE L2 -3 3423 3339 3 1109 197 0 0 117 chr12 68784651 68784711 -52472819 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 3 1109 1065 81 0 0 chr12 68784711 68784847 -52472683 - B1_Mus1 SINE Alu -9 139 4 3 1109 287 279 47 26 chr12 68785054 68785200 -52472330 - L1_Mm LINE L1 -2314 3566 3414 3 1109 182 192 0 19 chr12 68785329 68785382 -52472148 + CT-rich Low_complexity Low_complexity 1 52 0 3 1109 294 29 0 0 chr12 68785390 68785425 -52472105 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1109 2113 223 47 116 chr12 68785442 68785805 -52471725 - RMER19C LTR ERVK -1 610 272 3 1109 1539 198 104 88 chr12 68785805 68786325 -52471205 + RLTR11A LTR ERVK 1 528 0 3 1109 2113 223 47 116 chr12 68786325 68786616 -52470914 - RMER19C LTR ERVK -340 271 1 3 1109 23 33 0 0 chr12 68786989 68787019 -52470511 + AT_rich Low_complexity Low_complexity 1 30 0 3 1109 672 283 38 28 chr12 68787019 68787230 -52470300 - B3 SINE B2 0 216 4 3 1109 354 98 0 0 chr12 68788012 68788063 -52469467 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 4 1109 1119 68 0 7 chr12 68788065 68788212 -52469318 - B1_Mus2 SINE Alu 0 147 2 4 1109 536 124 140 9 chr12 68788221 68788335 -52469195 - RMER1B Other Other -2 1064 936 4 1109 344 214 169 14 chr12 68789249 68789372 -52468158 - MER2 DNA MER2_type -47 298 152 4 1109 1023 0 0 0 chr12 68789372 68789497 -52468033 - L1Md_T LINE L1 0 6582 6458 4 1109 344 214 169 14 chr12 68789497 68789515 -52468015 - MER2 DNA MER2_type -194 151 135 4 1109 490 126 34 0 chr12 68789607 68789726 -52467804 + (CAGAGA)n Simple_repeat Simple_repeat 2 124 0 4 1109 2360 39 0 0 chr12 68789737 68790023 -52467507 + L1Md_A LINE L1 6297 6582 0 4 1109 248 183 43 0 chr12 68790199 68790292 -52467238 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 1109 25 83 0 0 chr12 68790531 68790591 -52466939 + AT_rich Low_complexity Low_complexity 1 60 0 4 1109 387 311 78 58 chr12 68791350 68791592 -52465938 - MLT1C LTR MaLR -2 465 219 4 1109 5800 98 0 7 chr12 68792126 68792949 -52464581 - L1_Mus4 LINE L1 -4 6632 5816 4 1109 454 78 0 0 chr12 68792949 68793013 -52464517 + L1_Mus4 LINE L1 5760 5823 -815 4 1109 352 313 69 78 chr12 68793031 68793263 -52464267 - L1MEd LINE L1 -5008 1111 882 4 1109 3941 120 55 7 chr12 68793675 68794305 -52463225 - Lx3C LINE L1 -24 6957 6296 4 1109 330 26 0 0 chr12 68794305 68794344 -52463186 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 4 1109 2373 240 88 18 chr12 68794344 68794583 -52462947 - Lx3C LINE L1 -685 6296 6024 4 1109 951 11 0 78 chr12 68794583 68794775 -52462755 + (TTC)n Simple_repeat Simple_repeat 1 177 0 4 1109 2373 240 88 18 chr12 68794775 68794799 -52462731 - Lx3C LINE L1 -958 6023 6000 4 1109 341 17 0 65 chr12 68794799 68794861 -52462669 + (TTC)n Simple_repeat Simple_repeat 3 60 0 4 1109 534 141 11 0 chr12 68794874 68794966 -52462564 - Lx2 LINE L1 -16 6981 6889 4 1109 2450 110 14 0 chr12 68794966 68795321 -52462209 + Lx2 LINE L1 6444 6803 -194 4 1109 324 0 0 0 chr12 68795328 68795364 -52462166 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1109 258 32 0 0 chr12 68795552 68795583 -52461947 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1109 572 304 65 32 chr12 68795826 68796135 -52461395 + MER57F LTR ERV1 5 323 -113 4 1109 206 118 39 0 chr12 68796391 68796442 -52461088 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 4 1109 349 247 26 13 chr12 68796456 68796534 -52460996 - RSINE1 SINE B4 -26 139 61 4 1109 294 125 0 0 chr12 68796907 68796955 -52460575 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1109 24 0 0 0 chr12 68797245 68797269 -52460261 + AT_rich Low_complexity Low_complexity 1 24 0 4 1109 792 157 0 0 chr12 68799420 68799567 -52457963 + GA-rich Low_complexity Low_complexity 2 148 0 4 1109 515 260 33 58 chr12 68799610 68799851 -52457679 + L1MC2 LINE L1 5663 5897 -447 4 1109 8062 136 20 3 chr12 68800154 68801479 -52456051 - L1_Mur2 LINE L1 -1331 4546 3200 4 1109 5604 132 30 13 chr12 68801476 68802948 -52454582 - L1VL4 LINE L1 -1775 1784 304 4 1109 21 36 0 0 chr12 68803950 68803978 -52453552 + AT_rich Low_complexity Low_complexity 1 28 0 4 1109 276 149 0 0 chr12 68805241 68805288 -52452242 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 4 1109 1308 101 42 24 chr12 68805414 68805627 -52451903 - L1Md_F2 LINE L1 -2 6580 6364 4 1109 207 0 0 0 chr12 68805728 68805751 -52451779 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1109 13565 71 7 4 chr12 68806037 68808548 -52448982 - L1Md_F2 LINE L1 -2 6580 4060 4 1109 227 331 44 6 chr12 68808580 68808738 -52448792 - L1M4 LINE L1 -1144 5002 4839 4 1109 213 178 0 0 chr12 68808951 68808996 -52448534 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 4 1109 526 250 15 22 chr12 68809628 68809763 -52447767 + RSINE1 SINE B4 3 136 -29 4 1109 255 348 19 110 chr12 68809730 68809885 -52447645 - LTR33B LTR ERVL -318 185 45 4 1109 297 298 138 0 chr12 68810599 68810693 -52446837 + ORR1E LTR MaLR 8 114 -245 4 1109 508 205 77 106 chr12 68810852 68811059 -52446471 + Lx8 LINE L1 3449 3649 -2231 4 1109 801 284 6 113 chr12 68811093 68811239 -52446291 + Lx9 LINE L1 7058 7187 -457 4 1109 659 113 35 0 chr12 68811239 68811380 -52446150 - Lx2A1 LINE L1 -5 7003 6858 4 1109 801 284 6 113 chr12 68811380 68811586 -52445944 + Lx9 LINE L1 7188 7372 -272 4 1109 216 0 0 0 chr12 68811646 68811670 -52445860 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 1109 291 54 0 0 chr12 68811674 68811711 -52445819 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1109 3008 255 74 37 chr12 68811720 68811774 -52445756 + Lx8 LINE L1 3928 3997 -1883 4 1109 180 0 0 0 chr12 68811774 68811794 -52445736 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1109 1128 75 0 7 chr12 68811797 68811944 -52445586 - B1_Mus2 SINE Alu -1 146 1 4 138 3008 255 74 37 chr12 68811944 68813043 -52444487 + Lx8 LINE L1 3998 5128 -752 4 1110 7245 53 9 2 chr12 68813055 68813942 -52443588 + RLTR13B1 LTR ERVK 1 893 0 4 1110 1332 263 91 11 chr12 68814136 68814509 -52443021 + MTD LTR MaLR 3 405 -14 4 1110 2664 321 80 29 chr12 68814548 68816117 -52441413 + Lx8 LINE L1 5358 7017 -456 4 1110 512 278 142 36 chr12 68816429 68816963 -52440567 + L1MA5 LINE L1 5300 5897 -403 4 1110 8759 97 36 13 chr12 68817155 68818837 -52438693 + Lx3A LINE L1 5253 6974 -7 4 1110 244 357 45 0 chr12 68818985 68819097 -52438433 - PB1D10 SINE Alu 0 117 1 4 1110 362 305 54 50 chr12 68819097 68819341 -52438189 + L1MA5 LINE L1 6057 6299 -1 4 1110 22 80 0 0 chr12 68819820 68819870 -52437660 + AT_rich Low_complexity Low_complexity 1 50 0 4 1110 1304 230 73 32 chr12 68820854 68821223 -52436307 + ORR1C2 LTR MaLR 1 384 0 4 1110 35 41 0 0 chr12 68821728 68821777 -52435753 + AT_rich Low_complexity Low_complexity 1 49 0 4 1110 2527 185 41 24 chr12 68822284 68822826 -52434704 + Lx3C LINE L1 6424 6974 -2 4 1110 779 293 34 19 chr12 68823173 68823445 -52434085 - RMER1C Other Other -492 850 602 4 1110 1556 215 31 49 chr12 68823464 68823850 -52433680 + RMER1C Other Other 674 1052 -290 4 1110 4846 82 142 1 chr12 68823850 68824569 -52432961 + Lx3_Mus LINE L1 6185 7004 -5 4 1110 474 259 126 6 chr12 68825855 68826022 -52431508 - B3A SINE B2 -11 187 1 4 1110 24 77 0 0 chr12 68826057 68826109 -52431421 + AT_rich Low_complexity Low_complexity 1 52 0 4 1110 581 323 82 91 chr12 68826703 68827085 -52430445 - MTE2a LTR MaLR -14 405 30 4 1110 204 214 0 0 chr12 68827663 68827705 -52429825 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1110 229 241 0 36 chr12 68827771 68827827 -52429703 + GA-rich Low_complexity Low_complexity 5 58 0 4 1110 265 111 36 18 chr12 68828137 68828192 -52429338 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 4 1110 1603 26 0 0 chr12 68828251 68828444 -52429086 + L1Md_A LINE L1 6390 6582 0 4 1110 2974 136 94 15 chr12 68828461 68829004 -52428526 + MYSERV6-int LTR ERVK 2710 3295 -5664 4 1110 1859 181 17 17 chr12 68829004 68829358 -52428172 + RMER6B LTR ERVK 108 461 0 4 1110 336 294 94 44 chr12 68829418 68829578 -52427952 - ERVL-B4-int LTR ERVL -3640 2117 1950 4 1110 342 335 27 22 chr12 68829595 68829778 -52427752 - ERVL-B4-int LTR ERVL -3852 1862 1679 4 1110 1071 67 0 0 chr12 68830121 68830256 -52427274 + B1_Mus1 SINE Alu 2 136 -12 4 1110 3624 77 2 6 chr12 68830257 68830741 -52426789 + L1Md_F2 LINE L1 6084 6565 -17 4 1110 2107 113 6 12 chr12 68831272 68831593 -52425937 + Lx LINE L1 6336 6654 0 4 1110 21 0 0 0 chr12 68831767 68831788 -52425742 + AT_rich Low_complexity Low_complexity 1 21 0 4 1110 402 260 0 0 chr12 68831852 68831979 -52425551 + (TG)n Simple_repeat Simple_repeat 2 128 0 4 1110 565 247 35 35 chr12 68833537 68833709 -52423821 + RMER17B LTR ERVK 1 172 -786 4 1110 252 135 39 0 chr12 68833716 68833768 -52423762 - Lx9 LINE L1 -10 7634 7581 4 1110 3209 231 35 16 chr12 68833776 68834574 -52422956 - Lx9 LINE L1 -178 7466 6654 4 1110 2533 156 14 63 chr12 68834574 68835080 -52422450 + Lx4A LINE L1 6576 7056 -2 4 1110 254 346 12 0 chr12 68835232 68835313 -52422217 - ID4_ SINE ID -1 82 1 4 1110 2577 79 8 57 chr12 68835566 68835968 -52421562 - L1_Mus3 LINE L1 -2 6636 6255 4 1110 399 113 0 0 chr12 68836448 68836519 -52421011 + (TCTCTG)n Simple_repeat Simple_repeat 6 76 0 4 1110 207 0 0 0 chr12 68836802 68836825 -52420705 + (TAA)n Simple_repeat Simple_repeat 1 23 0 4 1110 2449 94 52 5 chr12 68837040 68837425 -52420105 - L1_Mus3 LINE L1 0 6638 6236 4 1110 57 16 0 0 chr12 68838033 68838097 -52419433 + AT_rich Low_complexity Low_complexity 1 64 0 4 1110 4017 68 0 2 chr12 68838735 68839252 -52418278 - L1_Mus1 LINE L1 0 6567 6052 4 1110 2400 78 0 0 chr12 68839253 68839573 -52417957 + L1_Mus1 LINE L1 5732 6051 -516 4 1110 521 296 81 17 chr12 68839573 68839745 -52417785 + B3 SINE B2 30 212 -4 4 1110 436 342 70 5 chr12 68839777 68839962 -52417568 + B3A SINE B2 2 198 0 4 1110 350 353 0 0 chr12 68842022 68842155 -52415375 - Lx8 LINE L1 -294 7179 7047 4 1110 954 259 183 7 chr12 68842191 68842628 -52414902 + Lx8 LINE L1 6320 6833 -640 4 1110 1981 207 21 8 chr12 68842632 68843017 -52414513 + MTC LTR MaLR 1 390 -31 4 1110 215 146 0 59 chr12 68843017 68843068 -52414462 + T-rich Low_complexity Low_complexity 2 49 0 4 1110 437 321 63 19 chr12 68843100 68843259 -52414271 + Lx8 LINE L1 6841 7006 -467 4 1110 513 0 0 0 chr12 68843628 68843685 -52413845 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 1110 321 158 24 12 chr12 68844731 68844814 -52412716 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1110 389 372 34 98 chr12 68845166 68845397 -52412133 + B4A SINE B4 9 225 -67 4 1110 1055 81 0 0 chr12 68845397 68845533 -52411997 + B1_Mus2 SINE Alu 2 137 -10 4 1110 282 29 0 0 chr12 68845533 68845568 -52411962 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1110 389 372 34 98 chr12 68845568 68845630 -52411900 + B4A SINE B4 226 283 -9 4 1110 205 200 0 0 chr12 68845651 68845686 -52411844 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 4 1110 31 26 0 0 chr12 68845840 68845878 -52411652 + AT_rich Low_complexity Low_complexity 1 38 0 4 1110 8724 125 25 31 chr12 68846187 68847896 -52409634 - Lx3C LINE L1 -2 6974 5291 4 1110 2269 35 10 30 chr12 68847896 68848072 -52409458 - L1Md_F3 LINE L1 -14 6570 6397 4 1110 2596 46 9 6 chr12 68848072 68848398 -52409132 + IAPLTR2b LTR ERVK 1 327 0 4 1110 2269 35 10 30 chr12 68848398 68848518 -52409012 - L1Md_F3 LINE L1 -188 6396 6280 4 1110 5431 130 68 51 chr12 68848518 68848966 -52408564 - Lx3C LINE L1 -596 5290 4822 4 1110 23 0 0 0 chr12 68849532 68849555 -52407975 + AT_rich Low_complexity Low_complexity 1 23 0 4 1110 21 71 0 0 chr12 68849698 68849740 -52407790 + AT_rich Low_complexity Low_complexity 1 42 0 4 1110 192 77 0 0 chr12 68850132 68850158 -52407372 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1110 757 129 0 98 chr12 68850316 68850479 -52407051 + L1Md_F2 LINE L1 6433 6579 -3 5 1110 7360 106 13 36 chr12 68850489 68852100 -52405430 + L1Md_F2 LINE L1 99 1497 -4386 5 1110 21629 62 4 3 chr12 68852091 68855622 -52401908 + L1Md_F2 LINE L1 3018 6554 -28 5 1110 185 65 32 0 chr12 68855679 68855710 -52401820 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1110 270 238 34 45 chr12 68856374 68856462 -52401068 + RMER4A LTR ERVK 301 387 -79 5 1110 3273 105 6 0 chr12 68856746 68857378 -52400152 + Lx LINE L1 5377 6011 -643 5 1110 286 125 0 0 chr12 68857373 68857413 -52400117 - Lx LINE L1 -500 6154 6115 5 1110 1338 140 64 0 chr12 68857413 68857649 -52399881 + Lx LINE L1 6402 6652 -2 5 1110 32 26 0 0 chr12 68857788 68857827 -52399703 + AT_rich Low_complexity Low_complexity 1 39 0 5 1110 264 243 28 14 chr12 68857830 68857901 -52399629 - Lx4B LINE L1 -73 6985 6914 5 1110 22 35 0 0 chr12 68858387 68858416 -52399114 + AT_rich Low_complexity Low_complexity 1 29 0 5 1110 298 331 161 45 chr12 68858677 68858832 -52398698 + MLT1A LTR MaLR 136 308 -66 5 1110 551 348 25 0 chr12 68860404 68860608 -52396922 + LTR89 LTR ERVL? 605 813 -66 5 1110 468 260 23 54 chr12 68861048 68861178 -52396352 + MIR3 SINE MIR 44 169 -39 5 1110 5901 132 20 28 chr12 68861494 68862236 -52395294 - Lx2 LINE L1 0 6997 6271 5 1110 495 0 0 0 chr12 68862236 68862291 -52395239 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1110 5901 132 20 28 chr12 68862291 68862458 -52395072 - Lx2 LINE L1 -727 6270 6103 5 1110 4199 141 46 69 chr12 68862458 68863366 -52394164 - RMER17D LTR ERVK -2 887 1 5 1110 5901 132 20 28 chr12 68863366 68863453 -52394077 - Lx2 LINE L1 -895 6102 6008 5 1110 20895 57 2 0 chr12 68864289 68867610 -52389920 - L1Md_F3 LINE L1 -14 6570 3242 5 1110 852 223 8 29 chr12 68867631 68867871 -52389659 - L1VL1 LINE L1 -6171 251 17 5 1110 336 48 0 0 chr12 68868062 68868104 -52389426 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1110 218 213 0 0 chr12 68868249 68868296 -52389234 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 5 1110 330 107 0 0 chr12 68868795 68868851 -52388679 + (T)n Simple_repeat Simple_repeat 1 56 0 5 1110 1021 92 35 0 chr12 68868851 68868993 -52388537 - B1_Mm SINE Alu 0 147 1 5 1110 42 20 0 0 chr12 68869100 68869149 -52388381 + AT_rich Low_complexity Low_complexity 1 49 0 5 1110 27 49 0 0 chr12 68870624 68870665 -52386865 + AT_rich Low_complexity Low_complexity 1 41 0 5 1110 7336 30 11 30 chr12 68871817 68872751 -52384779 + L1Md_F3 LINE L1 5669 6584 0 5 1110 26 0 0 0 chr12 68873163 68873189 -52384341 + AT_rich Low_complexity Low_complexity 1 26 0 5 1110 360 0 0 0 chr12 68873924 68873964 -52383566 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1110 477 0 0 0 chr12 68873964 68874016 -52383514 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1110 755 67 240 16 chr12 68874118 68874239 -52383291 + B1_Mus1 SINE Alu 1 148 0 5 1110 21 0 0 0 chr12 68874740 68874761 -52382769 + AT_rich Low_complexity Low_complexity 1 21 0 5 1110 1809 218 61 19 chr12 68875337 68875716 -52381814 - MTB_Mm LTR MaLR 0 407 13 5 1110 437 188 0 218 chr12 68876423 68876593 -52380937 - RLTR21 LTR ERVK 0 1572 1440 5 1110 228 35 0 0 chr12 68876609 68876638 -52380892 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1110 306 0 0 0 chr12 68876638 68876672 -52380858 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1110 5788 189 18 41 chr12 68876678 68876917 -52380613 - RMER12B LTR ERVK -231 1173 956 5 1110 2620 110 26 23 chr12 68876917 68877344 -52380186 + Lx2 LINE L1 6562 6989 -8 5 1110 5788 189 18 41 chr12 68877344 68878304 -52379226 - RMER12B LTR ERVK -449 955 1 5 1110 512 262 60 160 chr12 68878304 68878569 -52378961 + MLT1B LTR MaLR 27 263 -127 5 1110 1802 211 93 23 chr12 68878575 68879059 -52378471 + RMER5 LTR ERV1 11 528 -6 5 1110 258 297 40 63 chr12 68879065 68879191 -52378339 + MLT1B LTR MaLR 261 383 -7 5 1110 330 284 64 54 chr12 68879825 68880030 -52377500 - L1MB1 LINE L1 -13 6176 5965 5 1110 297 0 0 0 chr12 68880267 68880300 -52377230 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 1110 1064 82 14 0 chr12 68880856 68881002 -52376528 + B1_Mus1 SINE Alu 1 148 0 5 1110 186 118 0 0 chr12 68881002 68881036 -52376494 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 5 1110 1418 55 20 20 chr12 68881198 68881402 -52376128 - L1Md_F3 LINE L1 -3 6581 6378 5 1110 31254 73 2 14 chr12 68881402 68886275 -52371255 - L1Md_F3 LINE L1 -488 5395 591 5 1110 1093 82 7 0 chr12 68887010 68887156 -52370374 - B1_Mus2 SINE Alu 0 147 1 5 1110 21 36 0 0 chr12 68887612 68887640 -52369890 + AT_rich Low_complexity Low_complexity 1 28 0 5 1110 338 366 113 66 chr12 68887863 68888182 -52369348 + MLT1E2 LTR MaLR 284 621 -3 5 1110 39 0 0 0 chr12 68888254 68888293 -52369237 + AT_rich Low_complexity Low_complexity 1 39 0 5 1110 659 299 96 97 chr12 68888532 68889358 -52368172 + L1M2 LINE L1 4341 5165 -978 5 1110 471 354 18 24 chr12 68889734 68889902 -52367628 + B3 SINE B2 9 175 -41 5 1110 227 140 70 0 chr12 68889902 68889959 -52367571 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1110 2396 175 42 117 chr12 68889972 68890718 -52366812 + RMER6C LTR ERVK 1 690 0 5 1110 367 275 95 62 chr12 68890719 68891056 -52366474 + L1M2 LINE L1 5332 5679 -612 5 1110 430 314 85 28 chr12 68891083 68891224 -52366306 - B3A SINE B2 -48 150 2 5 1110 5220 78 51 9 chr12 68891505 68892276 -52365254 + Lx3_Mus LINE L1 6187 6989 -20 5 1110 423 0 0 0 chr12 68892276 68892323 -52365207 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 1110 880 219 12 4 chr12 68892445 68892547 -52364983 + Lx9 LINE L1 7398 7501 -143 5 1110 1559 129 36 69 chr12 68892547 68892880 -52364650 - RLTRETN_Mm LTR ERVK 0 322 1 5 1110 880 219 12 4 chr12 68892880 68893020 -52364510 + Lx9 LINE L1 7502 7642 -2 5 1110 287 222 0 12 chr12 68894028 68894110 -52363420 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 1110 456 104 0 0 chr12 68894224 68894291 -52363239 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 5 1110 22 0 0 0 chr12 68894712 68894734 -52362796 + AT_rich Low_complexity Low_complexity 1 22 0 5 1110 1413 264 94 0 chr12 68894868 68895250 -52362280 + MTD LTR MaLR 2 419 0 5 1110 23 33 0 0 chr12 68895484 68895514 -52362016 + AT_rich Low_complexity Low_complexity 1 30 0 5 1110 1589 262 40 24 chr12 68895514 68895983 -52361547 - Lx6 LINE L1 -69 7391 6915 5 1110 3639 163 7 20 chr12 68896307 68897040 -52360490 - Lx5 LINE L1 -783 5094 4372 5 1110 5757 199 47 14 chr12 68897040 68898885 -52358645 + Lx5 LINE L1 5105 7017 -33 5 1110 249 98 0 0 chr12 68899515 68899556 -52357974 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1110 255 218 101 13 chr12 68899919 68899942 -52357588 + B1F1 SINE Alu 58 143 -6 5 1110 297 182 0 18 chr12 68899942 68899998 -52357532 + ID_B1 SINE B4 164 218 -6 5 1110 432 248 164 13 chr12 68901696 68901855 -52355675 - ORR1D1 LTR MaLR -12 362 176 5 1110 3448 31 0 12 chr12 68901864 68902285 -52355245 + L1Md_F3 LINE L1 6155 6570 -14 5 1110 925 103 56 51 chr12 68902335 68902530 -52355000 + Lx2 LINE L1 6786 6981 -16 5 1110 306 39 0 55 chr12 68902647 68902702 -52354828 + (GGAGA)n Simple_repeat Simple_repeat 5 56 0 5 1110 335 250 38 0 chr12 68902715 68902795 -52354735 - ORR1D1 LTR MaLR -287 83 1 5 1110 38 61 0 0 chr12 68903047 68903113 -52354417 + AT_rich Low_complexity Low_complexity 1 66 0 5 1110 288 0 0 0 chr12 68903291 68903323 -52354207 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1110 462 36 0 0 chr12 68904157 68904213 -52353317 + (TCC)n Simple_repeat Simple_repeat 3 58 0 5 1110 558 198 19 0 chr12 68904244 68904350 -52353180 - B1_Mur4 SINE Alu -37 113 6 5 1110 25 31 0 0 chr12 68904363 68904395 -52353135 + AT_rich Low_complexity Low_complexity 1 32 0 5 1110 189 121 0 0 chr12 68904755 68904788 -52352742 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 5 1110 404 323 23 39 chr12 68904821 68904950 -52352580 - RSINE1 SINE B4 -36 129 3 5 1110 748 213 0 0 chr12 68905709 68905850 -52351680 + B1_Mus1 SINE Alu 5 145 -3 5 1110 186 167 0 0 chr12 68906457 68906493 -52351037 + GA-rich Low_complexity Low_complexity 1 36 0 5 1110 2075 192 100 33 chr12 68906919 68907398 -52350132 + RLTR11A LTR ERVK 1 511 -17 5 1110 6656 183 40 64 chr12 68907758 68908828 -52348702 + RLTR21 LTR ERVK 11 1097 -475 5 1110 261 0 0 0 chr12 68908828 68908857 -52348673 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1110 6656 183 40 64 chr12 68908857 68908956 -52348574 + RLTR21 LTR ERVK 1098 1169 -403 5 1110 387 125 0 0 chr12 68908956 68909028 -52348502 + (TATG)n Simple_repeat Simple_repeat 4 75 0 5 1110 6656 183 40 64 chr12 68909028 68909084 -52348446 + RLTR21 LTR ERVK 1170 1215 -357 5 1110 204 40 0 0 chr12 68909084 68909109 -52348421 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 1110 6656 183 40 64 chr12 68909109 68909183 -52348347 + RLTR21 LTR ERVK 1216 1273 -299 5 1110 192 125 0 0 chr12 68909183 68909215 -52348315 + (TATG)n Simple_repeat Simple_repeat 3 34 0 5 1110 6656 183 40 64 chr12 68909215 68909480 -52348050 + RLTR21 LTR ERVK 1274 1538 -34 5 1110 245 242 32 0 chr12 68909485 68909547 -52347983 + RMER12B LTR ERVK 1341 1404 0 5 1110 459 339 28 22 chr12 68909547 68909715 -52347815 + ID_B1 SINE B4 51 219 -5 5 1110 234 329 160 28 chr12 68909728 68909872 -52347658 - MLT1F LTR MaLR -62 486 324 5 1110 2732 251 77 9 chr12 68910601 68911366 -52346164 - Lx2B LINE L1 -14 6986 6170 5 1110 2706 190 10 1 chr12 68911402 68912160 -52345370 + Lx2B LINE L1 5371 6147 -853 5 1110 758 284 130 13 chr12 68912279 68912579 -52344951 + Lx6 LINE L1 7126 7460 0 5 1110 1764 172 83 0 chr12 68913105 68913431 -52344099 + ORR1B2 LTR MaLR 1 353 -14 5 1110 21 36 0 0 chr12 68913435 68913463 -52344067 + AT_rich Low_complexity Low_complexity 1 28 0 5 1110 26 0 0 0 chr12 68913774 68913800 -52343730 + AT_rich Low_complexity Low_complexity 1 26 0 5 1110 2939 213 39 12 chr12 68914033 68915133 -52342397 - Lx7 LINE L1 -1365 6331 5191 5 1110 253 370 37 0 chr12 68916561 68916696 -52340834 - ERVL-E-int LTR ERVL -3525 2142 2003 5 1110 495 410 97 22 chr12 68916760 68917254 -52340276 + L1M4b LINE L1 54 584 -6750 5 1110 392 342 32 11 chr12 68917396 68917582 -52339948 + RMER5 LTR ERV1 328 517 -17 5 1110 8210 91 2 0 chr12 68917745 68919685 -52337845 + L1_Mus1 LINE L1 4623 6567 0 5 1110 342 267 59 29 chr12 68919762 68919932 -52337598 + Lx8 LINE L1 7293 7467 -6 5 1110 189 0 0 0 chr12 68920074 68920095 -52337435 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1110 495 0 0 0 chr12 68920097 68920152 -52337378 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1110 453 36 0 0 chr12 68920152 68920206 -52337324 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1110 1097 90 0 7 chr12 68920222 68920368 -52337162 - B1_Mus1 SINE Alu -1 147 3 6 1110 189 0 0 0 chr12 68920847 68920868 -52336662 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 6 1110 281 243 110 18 chr12 68920962 68921071 -52336459 - RMER1B Other Other -28 1038 920 6 1110 637 231 6 6 chr12 68921078 68921252 -52336278 + G-rich Low_complexity Low_complexity 4 177 0 6 1110 525 104 0 0 chr12 68921241 68921318 -52336212 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 6 1110 22 35 0 0 chr12 68921319 68921348 -52336182 + AT_rich Low_complexity Low_complexity 1 29 0 6 1110 937 179 101 0 chr12 68921357 68921564 -52335966 - RMER1B Other Other -197 869 642 6 1110 1657 244 129 2 chr12 68922204 68923009 -52334521 - RMER1B Other Other -438 592 2 6 1110 2789 55 35 0 chr12 68923380 68923725 -52333805 + IAPEY2_LTR LTR ERVK 1 357 0 6 1110 1869 199 29 140 chr12 68923961 68923986 -52333544 - Lx9 LINE L1 -8 7636 7609 6 1110 3214 57 3 0 chr12 68923986 68924370 -52333160 + IAPEY_LTR LTR ERVK 1 385 0 6 1110 1869 199 29 140 chr12 68924370 68925079 -52332451 - Lx9 LINE L1 -36 7608 6984 6 1110 6153 77 8 1 chr12 68925077 68925925 -52331605 + L1_Mus1 LINE L1 5714 6567 0 6 1110 275 233 41 0 chr12 68925935 68926008 -52331522 - Lx9 LINE L1 -645 6999 6924 6 1110 984 95 0 33 chr12 68926096 68926232 -52331298 - L1Md_F2 LINE L1 -445 6137 6002 6 1110 1905 93 25 11 chr12 68926232 68926513 -52331017 + L1_Mus1 LINE L1 6283 6567 0 6 1110 984 95 0 33 chr12 68926513 68926529 -52331001 - L1Md_F2 LINE L1 -581 6001 5990 6 1110 369 323 102 5 chr12 68926551 68926747 -52330783 - Charlie2b DNA MER1_type -2058 724 510 6 1110 1299 228 41 30 chr12 68927647 68928013 -52329517 - ORR1D1 LTR MaLR 0 374 5 6 1110 997 290 110 12 chr12 68928044 68928379 -52329151 - ORR1D2 LTR MaLR -2 368 1 6 1110 297 125 0 0 chr12 68928392 68928448 -52329082 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1110 948 300 71 6 chr12 68928703 68929259 -52328271 - L1M2 LINE L1 -514 5777 5175 6 1110 606 217 178 31 chr12 68929289 68929488 -52328042 - B3 SINE B2 -8 208 2 6 1110 393 364 42 55 chr12 68929493 68929854 -52327676 - L1M2 LINE L1 -1028 5115 4760 6 1110 39447 10 0 2 chr12 68929854 68937669 -52319861 - L1Md_A LINE L1 0 6582 1 6 1110 225 226 82 12 chr12 68937671 68937756 -52319774 - L1M2 LINE L1 -1374 4766 4676 6 1110 215 222 16 0 chr12 68938212 68938275 -52319255 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1110 249 304 57 73 chr12 68938383 68938507 -52319023 - ID_B1 SINE B4 0 224 103 6 1110 306 0 0 0 chr12 68938741 68938775 -52318755 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1110 425 97 0 14 chr12 68938775 68938848 -52318682 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 1110 189 0 0 0 chr12 68938934 68938955 -52318575 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1110 360 0 0 0 chr12 68938955 68938994 -52318536 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1110 2829 30 0 0 chr12 68939490 68939828 -52317702 - ORR1A0 LTR MaLR -8 338 1 6 1110 25 0 0 0 chr12 68940031 68940056 -52317474 + AT_rich Low_complexity Low_complexity 1 25 0 6 1110 1510 82 9 5 chr12 68940285 68940505 -52317025 - L1_Mus3 LINE L1 -4 6634 6414 6 1110 1887 201 37 25 chr12 68940585 68940621 -52316909 - L1_Mus2 LINE L1 -1 6583 6545 6 1110 1334 116 0 0 chr12 68940621 68940819 -52316711 - L1_Mus1 LINE L1 -3 6564 6367 6 1110 2791 114 15 8 chr12 68940819 68941272 -52316258 - L1_Mus2 LINE L1 -40 6544 6081 6 1110 815 276 116 46 chr12 68941677 68942049 -52315481 - MTD LTR MaLR -14 405 8 6 1110 1256 246 52 11 chr12 68942088 68942375 -52315155 - MTD LTR MaLR -53 366 68 6 1110 3592 192 77 5 chr12 68942384 68943155 -52314375 - Lx5 LINE L1 0 7050 6225 6 1110 420 210 0 12 chr12 68943556 68943638 -52313892 + B1_Mus2 SINE Alu 10 90 -57 6 1110 213 39 0 0 chr12 68943638 68943664 -52313866 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1110 315 0 0 0 chr12 68943664 68943698 -52313832 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1111 23 0 0 0 chr12 68944274 68944297 -52313233 + AT_rich Low_complexity Low_complexity 1 23 0 6 1111 1826 127 80 0 chr12 68944349 68944648 -52312882 - IAPEY2_LTR LTR ERVK 0 357 35 6 1111 543 332 31 15 chr12 68944688 68944948 -52312582 - Lx8 LINE L1 -108 7365 7102 6 1111 263 256 70 42 chr12 68945077 68945220 -52312310 - Lx9 LINE L1 -1409 6235 6089 6 1111 618 131 0 0 chr12 68945439 68945538 -52311992 + (TTTCC)n Simple_repeat Simple_repeat 5 103 0 6 1111 640 163 38 64 chr12 68945593 68945750 -52311780 - Lx3_Mus LINE L1 -1 6980 6828 6 1111 7825 134 38 4 chr12 68945745 68947652 -52309878 - Lx3_Mus LINE L1 -663 6346 4304 6 1111 342 123 0 0 chr12 68947652 68947709 -52309821 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1111 6777 225 81 15 chr12 68947709 68948157 -52309373 - Lx3_Mus LINE L1 -1574 4303 3847 6 1111 197 0 0 67 chr12 68949105 68949135 -52308395 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1111 32 67 0 0 chr12 68949159 68949219 -52308311 + AT_rich Low_complexity Low_complexity 1 60 0 6 1111 446 323 40 15 chr12 68949739 68949937 -52307593 - Lx8 LINE L1 -99 7374 7172 6 1111 975 307 43 18 chr12 68949932 68950327 -52307203 + Lx9 LINE L1 7052 7456 -188 6 1111 234 0 0 0 chr12 68950337 68950363 -52307167 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1111 23 33 0 0 chr12 68950439 68950469 -52307061 + AT_rich Low_complexity Low_complexity 1 30 0 6 1111 253 321 28 50 chr12 68951581 68951722 -52305808 - MLT1J-int LTR MaLR -403 984 847 6 1111 193 188 11 45 chr12 68952275 68952364 -52305166 + (TATG)n Simple_repeat Simple_repeat 2 87 0 6 1111 21 0 0 0 chr12 68952690 68952711 -52304819 + AT_rich Low_complexity Low_complexity 1 21 0 6 1111 713 289 19 10 chr12 68952873 68953079 -52304451 - B3 SINE B2 0 216 9 6 1111 21 0 0 0 chr12 68953202 68953223 -52304307 + AT_rich Low_complexity Low_complexity 1 21 0 6 1111 812 92 6 67 chr12 68953406 68953570 -52303960 - L1_Mus4 LINE L1 -1 6635 6482 6 1111 218 355 64 29 chr12 68954976 68955147 -52302383 - MIR3 SINE MIR 0 208 32 6 1111 757 328 55 0 chr12 68955405 68955690 -52301840 + MTE2a LTR MaLR 13 314 -65 6 1111 189 107 0 0 chr12 68956479 68956507 -52301023 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6 1111 1277 7 0 0 chr12 68956515 68956666 -52300864 - L1Md_A LINE L1 0 6582 6432 6 1111 25 31 0 0 chr12 68956676 68956708 -52300822 + AT_rich Low_complexity Low_complexity 1 32 0 6 1111 566 330 85 45 chr12 68957261 68957706 -52299824 - MLT2B4 LTR ERVL -2 462 10 6 1111 1345 57 0 11 chr12 68958551 68958728 -52298802 + L1Md_F3 LINE L1 6398 6572 -12 6 1111 806 273 34 10 chr12 68959369 68959661 -52297869 - Lx9 LINE L1 -2 7642 7344 6 1111 1416 69 5 5 chr12 68959702 68959892 -52297638 + B2_Mm2 SINE B2 1 190 -5 6 1111 473 0 18 0 chr12 68959916 68959973 -52297557 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1111 405 0 0 0 chr12 68959973 68960017 -52297513 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1111 1147 235 86 34 chr12 68960042 68960425 -52297105 - L1_Rod LINE L1 -136 5711 5309 6 1111 405 274 10 3 chr12 68960442 68960621 -52296909 - L1_Rod LINE L1 -1685 4455 4238 6 1111 723 266 30 30 chr12 68960635 68960833 -52296697 + B3A SINE B2 1 198 0 6 1111 271 330 55 0 chr12 68960943 68961052 -52296478 - PB1D7 SINE Alu -5 115 1 6 1111 669 291 45 50 chr12 68961700 68962058 -52295472 + L1MA8 LINE L1 5586 5941 -350 6 1111 660 318 45 15 chr12 68962258 68962316 -52295214 - B3 SINE B2 -11 205 146 6 1111 5973 71 17 14 chr12 68962316 68963121 -52294409 - RLTR13C2 LTR ERVK 0 808 1 6 1111 660 318 45 15 chr12 68963121 68963260 -52294270 - B3 SINE B2 -71 145 2 6 1111 180 330 144 18 chr12 68964768 68964879 -52292651 - L2b LINE L2 0 3375 3251 6 1111 22 56 0 0 chr12 68964900 68964936 -52292594 + AT_rich Low_complexity Low_complexity 1 36 0 6 1111 365 54 18 0 chr12 68968622 68968678 -52288852 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1111 357 24 0 0 chr12 68968678 68968719 -52288811 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1111 297 0 0 0 chr12 68968771 68968804 -52288726 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1111 270 0 0 0 chr12 68968804 68968833 -52288697 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1111 284 48 0 23 chr12 68968883 68968926 -52288604 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1111 1310 260 182 24 chr12 68969175 68969813 -52287717 - L1_Rod LINE L1 -249 5598 4860 6 1111 1608 319 124 18 chr12 68970075 68971109 -52286421 + Lx9 LINE L1 6358 7500 -144 6 1111 227 107 93 0 chr12 68971142 68971217 -52286313 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 1111 26 30 0 0 chr12 68971382 68971415 -52286115 + AT_rich Low_complexity Low_complexity 1 33 0 6 1111 1156 309 51 65 chr12 68971426 68972274 -52285256 + L1_Mur3 LINE L1 4905 5740 -140 6 1111 481 276 0 8 chr12 68972748 68972865 -52284665 + B3 SINE B2 101 216 0 6 1111 282 193 0 0 chr12 68972987 68973044 -52284486 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 1111 28 71 0 0 chr12 68973063 68973119 -52284411 + AT_rich Low_complexity Low_complexity 1 56 0 6 1111 22 80 0 0 chr12 68973414 68973464 -52284066 + AT_rich Low_complexity Low_complexity 1 50 0 6 1111 2328 134 16 81 chr12 68973563 68974008 -52283522 + Lx3A LINE L1 6559 6974 -7 6 1111 185 65 0 31 chr12 68974023 68974055 -52283475 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1111 260 341 78 23 chr12 68974575 68974704 -52282826 + B1F2 SINE Alu 14 149 0 6 1111 1674 79 4 40 chr12 68975048 68975299 -52282231 - L1Md_F3 LINE L1 -20 6564 6323 6 1111 387 196 36 95 chr12 68975368 68975490 -52282040 + RMER19B LTR ERVK 309 404 -498 6 1111 908 77 0 0 chr12 68975491 68975608 -52281922 - L1Md_F2 LINE L1 -245 6337 6221 6 1111 2014 212 150 36 chr12 68975709 68976242 -52281288 - RMER19B LTR ERVK 0 902 309 6 1111 24 0 0 0 chr12 68976408 68976432 -52281098 + AT_rich Low_complexity Low_complexity 1 24 0 6 1111 4949 43 2 0 chr12 68977431 68978030 -52279500 - L1Md_T LINE L1 0 6582 5983 6 1111 3882 32 0 0 chr12 68978030 68978499 -52279031 + L1_Mm LINE L1 4242 4710 -1173 7 1111 21 36 0 0 chr12 68978657 68978685 -52278845 + AT_rich Low_complexity Low_complexity 1 28 0 7 1111 189 0 0 0 chr12 68978746 68978767 -52278763 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 1111 1126 75 0 13 chr12 68978787 68978936 -52278594 - B1_Mus2 SINE Alu 0 147 1 7 1111 221 0 35 0 chr12 68979026 68979055 -52278475 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1111 294 394 19 0 chr12 68979057 68979161 -52278369 - PB1D10 SINE Alu -11 106 1 7 1111 3253 38 5 2 chr12 68979947 68980342 -52277188 + MTA_Mm LTR MaLR 1 396 0 7 1111 191 36 0 35 chr12 68980733 68980762 -52276768 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 7 1111 1893 117 39 39 chr12 68981204 68981515 -52276015 - RLTR10E LTR ERVK 0 311 1 7 1111 345 62 0 0 chr12 68981880 68981928 -52275602 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1111 359 298 94 0 chr12 68982378 68982559 -52274971 + MER96B DNA hAT 18 215 -202 7 1111 246 62 0 0 chr12 68983507 68983539 -52273991 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 7 1111 21 71 0 0 chr12 68983616 68983658 -52273872 + AT_rich Low_complexity Low_complexity 1 42 0 7 1111 21 0 0 0 chr12 68985271 68985292 -52272238 + AT_rich Low_complexity Low_complexity 1 21 0 7 1111 3399 203 77 172 chr12 68985354 68985755 -52271775 + L1_Mur3 LINE L1 166 464 -7264 7 1111 2018 57 0 0 chr12 68985755 68986003 -52271527 + L1_Mus1 LINE L1 6319 6566 -1 7 1111 3399 203 71 129 chr12 68986003 68987145 -52270385 + L1_Mur3 LINE L1 465 1590 -4290 7 1111 814 32 0 31 chr12 68987160 68987288 -52270242 + L1Md_F2 LINE L1 6458 6581 -1 7 1111 236 139 0 0 chr12 68987288 68987324 -52270206 + MTEb LTR MaLR 172 207 -172 7 1111 3658 190 47 9 chr12 68987348 68988158 -52269372 + L1_Mur3 LINE L1 2994 3824 -2056 7 1111 893 86 0 41 chr12 68988158 68988328 -52269202 + (TCTA)n Simple_repeat Simple_repeat 1 163 0 7 1111 3658 190 47 9 chr12 68988328 68988416 -52269114 + L1_Mur3 LINE L1 3825 3925 -1955 7 1111 550 205 1 18 chr12 68988749 68988880 -52268650 + L1_Mur3 LINE L1 3933 4062 -1815 7 1111 23 0 0 0 chr12 68989999 68990022 -52267508 + AT_rich Low_complexity Low_complexity 1 23 0 7 1111 521 200 9 9 chr12 68990120 68990226 -52267304 - Lx4B LINE L1 -316 6742 6637 7 1111 2896 232 56 8 chr12 68990233 68990892 -52266638 + Lx5 LINE L1 5922 6612 -438 7 1111 281 302 172 13 chr12 68990895 68990961 -52266569 + ID_B1 SINE B4 49 133 -91 7 1111 687 12 0 0 chr12 68990961 68991041 -52266489 + (GGAAA)n Simple_repeat Simple_repeat 5 84 0 7 1111 281 302 172 13 chr12 68991041 68991125 -52266405 + ID_B1 SINE B4 134 222 -2 7 1111 952 284 80 27 chr12 68992007 68992344 -52265186 + MTEa LTR MaLR 25 379 0 7 1111 2395 283 29 23 chr12 68992436 68993131 -52264399 - Lx6 LINE L1 -4 7456 6758 7 1111 459 269 160 42 chr12 68993145 68993382 -52264148 + MTE-int LTR MaLR 83 347 -1233 7 1111 348 291 26 68 chr12 68993459 68993602 -52263928 + MTEb LTR MaLR 247 379 0 7 1111 2273 171 89 4 chr12 68993679 68993726 -52263804 - Lx5 LINE L1 -965 6085 6025 7 1111 378 0 0 0 chr12 68993726 68993768 -52263762 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 7 1111 6530 175 54 8 chr12 68993768 68995201 -52262329 - Lx5 LINE L1 -1026 6024 4534 7 1111 2932 251 117 6 chr12 68995236 68995962 -52261568 + Lx5 LINE L1 6244 7050 0 7 1111 355 373 74 11 chr12 68996764 68997035 -52260495 - B4A SINE B4 -4 288 1 7 1111 5586 76 32 13 chr12 68997475 68998257 -52259273 - L1_Mus3 LINE L1 0 6638 5842 7 1111 204 243 43 0 chr12 68998514 68998584 -52258946 + A-rich Low_complexity Low_complexity 1 73 0 7 1111 202 229 0 0 chr12 68999124 68999172 -52258358 + T-rich Low_complexity Low_complexity 1 48 0 7 1111 447 107 0 0 chr12 68999834 68999909 -52257621 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 1111 1661 322 64 50 chr12 69000020 69000956 -52256574 - MTEa-int LTR MaLR -850 730 2 1 1111 845 275 108 21 chr12 69000991 69001277 -52256253 - MTE2b LTR MaLR -41 338 28 2 1111 459 346 85 11 chr12 69001732 69002004 -52255526 - MLT1D LTR MaLR 0 505 214 3 1111 183 279 111 37 chr12 69002955 69003063 -52254467 + L3 LINE CR1 857 972 -3517 4 1111 22 0 0 0 chr12 69003071 69003093 -52254437 + AT_rich Low_complexity Low_complexity 1 22 0 5 1111 1024 248 89 30 chr12 69003987 69004226 -52253304 + RMER1C Other Other 11 244 -1098 6 1111 696 123 0 0 chr12 69004226 69004340 -52253190 + (CATA)n Simple_repeat Simple_repeat 4 117 0 7 1111 1024 248 89 30 chr12 69004340 69004370 -52253160 + RMER1C Other Other 245 296 -1046 6 1111 591 298 32 55 chr12 69004665 69004882 -52252648 + RMER1C Other Other 490 701 -641 6 1111 922 217 112 80 chr12 69004893 69005108 -52252422 + RMER1C Other Other 1009 1205 -137 6 1111 413 36 18 0 chr12 69005108 69005163 -52252367 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1111 922 217 112 80 chr12 69005163 69005258 -52252272 + RMER1C Other Other 1206 1329 -13 6 1111 417 262 16 0 chr12 69005263 69005385 -52252145 + Lx9 LINE L1 5701 5824 -23 9 1111 229 333 19 38 chr12 69005428 69005534 -52251996 + Lx9 LINE L1 6352 6455 -1189 9 1111 1276 335 68 45 chr12 69005560 69006469 -52251061 + Lx9 LINE L1 6531 7460 -184 9 1111 273 308 129 67 chr12 69008298 69008507 -52249023 + B4 SINE B4 8 229 -63 1 1111 7897 59 1 1 chr12 69010027 69011079 -52246451 + L1_Mus1 LINE L1 5516 6567 0 1 1111 741 328 62 37 chr12 69011391 69011714 -52245816 + MTEa LTR MaLR 49 379 0 1 1111 342 334 80 63 chr12 69011878 69012230 -52245300 + MLT1C LTR MaLR 10 338 -52 1 1111 910 247 118 30 chr12 69012931 69013236 -52244294 + L1VL2 LINE L1 160 491 -5844 1 1111 350 304 68 31 chr12 69013209 69013372 -52244158 + L1VL2 LINE L1 154 322 -6013 1 1111 5415 133 7 3 chr12 69013371 69014356 -52243174 - Lx LINE L1 -702 5952 4965 1 1111 809 179 6 0 chr12 69016218 69016380 -52241150 + CT-rich Low_complexity Low_complexity 4 166 0 1 1111 225 83 0 0 chr12 69016392 69016428 -52241102 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1111 480 35 0 0 chr12 69016430 69016488 -52241042 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1111 414 57 0 0 chr12 69016488 69016540 -52240990 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1111 1728 152 3 44 chr12 69017371 69017709 -52239821 + Lx3B LINE L1 6644 6967 -6 2 1111 509 0 0 16 chr12 69017724 69017786 -52239744 + (TAA)n Simple_repeat Simple_repeat 3 63 0 2 1111 6821 87 43 8 chr12 69017936 69018930 -52238600 - Lx3_Mus LINE L1 -7 7002 5974 2 1111 902 81 12 81 chr12 69018930 69019051 -52238479 + Lx3A LINE L1 5800 5908 -1073 2 1111 423 56 0 0 chr12 69019051 69019105 -52238425 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1111 902 81 12 81 chr12 69019105 69019144 -52238386 + Lx3A LINE L1 5909 5947 -1034 2 1111 22 35 0 0 chr12 69019310 69019339 -52238191 + AT_rich Low_complexity Low_complexity 1 29 0 2 1111 186 43 0 0 chr12 69019774 69019797 -52237733 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1111 658 293 112 41 chr12 69020057 69020158 -52237372 - L1MA7 LINE L1 -280 6011 5908 2 1111 600 14 0 0 chr12 69020158 69020227 -52237303 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1111 658 293 112 41 chr12 69020227 69020588 -52236942 - L1MA7 LINE L1 -384 5907 5516 2 1111 336 48 0 0 chr12 69021543 69021585 -52235945 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1111 2498 30 0 0 chr12 69021855 69022152 -52235378 - L1_Mm LINE L1 -2985 2898 2602 3 1111 323 279 182 23 chr12 69025010 69025230 -52232300 + L1MC2 LINE L1 5925 6179 -165 3 1111 1338 234 194 12 chr12 69025360 69025789 -52231741 + RMER15 LTR ERVL 23 529 -46 3 1111 23 33 0 0 chr12 69025948 69025978 -52231552 + AT_rich Low_complexity Low_complexity 1 30 0 3 1111 378 0 0 0 chr12 69028123 69028165 -52229365 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1111 236 111 22 0 chr12 69028599 69028644 -52228886 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1111 506 278 74 34 chr12 69028660 69028835 -52228695 - B3A SINE B2 -16 182 1 3 1111 216 0 0 0 chr12 69029966 69029990 -52227540 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1111 275 331 32 26 chr12 69030438 69030593 -52226937 - MIRb SINE MIR -8 260 105 3 1111 310 284 31 54 chr12 69031476 69031606 -52225924 + MER5A1 DNA MER1_type 3 129 -37 3 1111 271 295 73 92 chr12 69031897 69031924 -52225606 - B4A SINE B4 -46 246 91 4 1111 387 250 8 152 chr12 69031924 69032056 -52225474 - PB1D7 SINE Alu -1 119 7 4 1111 446 277 36 137 chr12 69032945 69033389 -52224141 - L1_Mur3 LINE L1 -2106 3774 3376 4 1111 516 32 0 0 chr12 69033411 69033473 -52224057 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1111 21 57 0 0 chr12 69033606 69033641 -52223889 + AT_rich Low_complexity Low_complexity 1 35 0 4 1111 600 14 0 0 chr12 69034290 69034359 -52223171 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1111 221 57 29 0 chr12 69034938 69034973 -52222557 + (TTG)n Simple_repeat Simple_repeat 1 36 0 4 1111 2423 100 64 0 chr12 69036458 69036817 -52220713 + Lx3B LINE L1 6107 6488 -485 4 1111 1412 145 24 16 chr12 69036817 69037070 -52220460 + Lx3B LINE L1 6719 6973 0 4 1111 264 340 94 47 chr12 69037470 69037683 -52219847 + RMER4B LTR ERVK 13 235 -350 4 1111 365 324 38 27 chr12 69037834 69038018 -52219512 + RMER15 LTR ERVL 325 510 -65 4 1111 326 330 37 95 chr12 69038882 69039123 -52218407 + RLTR25B LTR ERVK 1 227 -801 5 1111 3098 209 52 42 chr12 69040115 69040828 -52216702 + RMER6D LTR ERVK 1 720 0 5 1111 29 70 0 0 chr12 69041768 69041825 -52215705 + AT_rich Low_complexity Low_complexity 1 57 0 5 1111 204 40 0 0 chr12 69041952 69041977 -52215553 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1111 27 29 0 0 chr12 69042022 69042056 -52215474 + AT_rich Low_complexity Low_complexity 1 34 0 5 1111 462 279 91 21 chr12 69042093 69042263 -52215267 + B3A SINE B2 1 186 -30 5 1111 230 357 65 78 chr12 69042307 69042538 -52214992 - MLT1E3 LTR MaLR -281 343 116 5 1111 429 20 0 0 chr12 69042678 69042728 -52214802 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1111 669 313 77 37 chr12 69042821 69043093 -52214437 + B4A SINE B4 10 292 0 5 1111 21 36 0 0 chr12 69043881 69043909 -52213621 + AT_rich Low_complexity Low_complexity 1 28 0 5 1111 293 310 49 49 chr12 69043935 69044098 -52213432 - RSINE1 SINE B4 0 165 3 6 1111 575 27 0 14 chr12 69046004 69046078 -52211452 + (TTA)n Simple_repeat Simple_repeat 1 73 0 6 1111 1871 153 28 3 chr12 69046441 69046762 -52210768 - ORR1A4 LTR MaLR 0 329 1 6 1111 297 118 0 0 chr12 69046781 69046832 -52210698 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1111 523 298 0 0 chr12 69047304 69047418 -52210112 + B1_Mur1 SINE Alu 12 125 -24 6 1111 3090 113 0 2 chr12 69047418 69047863 -52209667 + Lx LINE L1 6211 6654 0 6 1111 2012 189 195 14 chr12 69047896 69048480 -52209050 - RMER6C LTR ERVK 0 690 1 6 1111 1185 48 0 0 chr12 69048777 69048923 -52208607 + B1_Mm SINE Alu 2 147 0 6 1111 207 173 0 37 chr12 69049125 69049179 -52208351 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 6 1111 702 192 33 0 chr12 69049565 69049685 -52207845 - ETnERV2-int LTR ERVK -213 7193 7070 6 1111 439 316 111 13 chr12 69049890 69050288 -52207242 + L1MB2 LINE L1 5719 6155 -16 7 1111 417 240 181 9 chr12 69050425 69050635 -52206895 - Lx9 LINE L1 -230 7414 7169 7 1111 444 283 0 19 chr12 69050664 69050819 -52206711 + Lx9 LINE L1 7458 7609 -35 7 1111 11691 18 1 4 chr12 69051139 69052890 -52204640 + L1Md_A LINE L1 1 1344 -5380 7 1111 15917 6 0 0 chr12 69055333 69057132 -52200398 + L1Md_A LINE L1 3788 5586 -297 7 1111 8988 4 0 0 chr12 69057132 69058128 -52199402 + L1Md_A LINE L1 5587 6582 0 7 1111 1138 68 0 26 chr12 69059275 69059426 -52198104 + B1_Mm SINE Alu 1 147 0 7 1111 276 127 0 0 chr12 69059429 69059484 -52198046 + (A)n Simple_repeat Simple_repeat 1 55 0 7 1111 2901 96 8 2 chr12 69060102 69060500 -52197030 + MTB LTR MaLR 1 400 0 7 1111 33 85 0 0 chr12 69060520 69060602 -52196928 + AT_rich Low_complexity Low_complexity 1 82 0 7 1111 6172 121 32 4 chr12 69061080 69062058 -52195472 - Lx2A1 LINE L1 0 7008 6004 7 1111 1477 97 0 0 chr12 69062058 69062265 -52195265 + Lx2A1 LINE L1 5809 6015 -993 7 1111 1760 157 12 82 chr12 69062474 69062585 -52194945 - MTC LTR MaLR -104 317 207 7 1111 1272 46 6 17 chr12 69062585 69062763 -52194767 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 8 1111 1760 157 12 82 chr12 69062763 69062785 -52194745 - MTC LTR MaLR -215 206 206 8 1111 1780 182 24 0 chr12 69062785 69063115 -52194415 - Lx4A LINE L1 -2 7056 6719 8 1111 1760 157 12 82 chr12 69063115 69063321 -52194209 - MTC LTR MaLR -215 206 1 7 1111 252 0 0 0 chr12 69063496 69063524 -52194006 + (TCC)n Simple_repeat Simple_repeat 3 30 0 8 1111 253 285 34 64 chr12 69063700 69063901 -52193629 + L1M2 LINE L1 4609 4808 -1335 8 1111 483 18 0 0 chr12 69063901 69063957 -52193573 + (ATAGG)n Simple_repeat Simple_repeat 2 57 0 8 1111 253 285 34 64 chr12 69063957 69064021 -52193509 + L1M2 LINE L1 4809 4866 -1277 8 1111 23 0 0 0 chr12 69064126 69064149 -52193381 + AT_rich Low_complexity Low_complexity 1 23 0 8 1111 938 264 48 8 chr12 69064318 69064526 -52193004 + MTD LTR MaLR 5 215 -204 8 1111 2079 148 276 43 chr12 69064526 69065084 -52192446 + RMER6C LTR ERVK 1 688 -2 8 1111 938 264 48 8 chr12 69065084 69065123 -52192407 + MTD LTR MaLR 216 261 -158 8 1111 45 45 0 0 chr12 69065123 69065189 -52192341 + AT_rich Low_complexity Low_complexity 1 66 0 8 1111 366 369 55 26 chr12 69065401 69065746 -52191784 - L1M5 LINE L1 -1227 4919 4565 9 1111 345 250 80 0 chr12 69066054 69066142 -52191388 + B1F SINE Alu 54 148 -1 9 1111 1451 252 26 20 chr12 69066940 69067288 -52190242 + Lx5 LINE L1 6695 7044 -6 9 1111 700 316 72 28 chr12 69067318 69067859 -52189671 + L1MA6 LINE L1 4471 5035 -1105 9 1111 4382 204 45 7 chr12 69067857 69068824 -52188706 + Lx2B LINE L1 5974 6977 -23 9 1111 981 294 65 30 chr12 69068836 69069152 -52188378 + L1MA6 LINE L1 5021 5350 -950 9 1111 363 78 0 0 chr12 69069152 69069203 -52188327 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1111 351 0 0 0 chr12 69069203 69069241 -52188289 + (GA)n Simple_repeat Simple_repeat 2 40 0 9 1111 981 308 68 53 chr12 69069241 69069812 -52187718 + L1MA6 LINE L1 5351 5930 -370 9 1111 2173 213 85 31 chr12 69071272 69071917 -52185613 + Lx7 LINE L1 5655 6334 -1362 9 1111 3073 255 31 18 chr12 69071932 69072725 -52184805 + Lx7 LINE L1 6457 7260 -436 9 1111 1684 241 194 15 chr12 69072720 69073260 -52184270 - Lx6 LINE L1 -6 7454 6818 9 1111 983 50 0 0 chr12 69073353 69073474 -52184056 + B1_Mm SINE Alu 17 137 -10 9 1111 207 0 0 0 chr12 69073474 69073497 -52184033 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1111 1055 217 29 53 chr12 69073502 69073843 -52183687 + Lx7 LINE L1 7364 7696 0 9 1111 384 325 40 12 chr12 69074654 69074904 -52182626 + L1MA4 LINE L1 5665 5906 -394 1 1112 21 36 0 0 chr12 69075077 69075105 -52182425 + AT_rich Low_complexity Low_complexity 1 28 0 1 1112 960 157 33 11 chr12 69075153 69075333 -52182197 + B2_Mm2 SINE B2 1 184 -11 1 1112 3280 166 5 24 chr12 69075507 69076081 -52181449 - Lx2 LINE L1 -41 6956 6394 1 1112 287 284 158 54 chr12 69076660 69076920 -52180610 + B4A SINE B4 5 291 -1 1 1112 289 320 20 0 chr12 69076987 69077087 -52180443 + PB1D7 SINE Alu 3 104 -16 1 1112 352 248 26 26 chr12 69077088 69077241 -52180289 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 1112 23 0 0 0 chr12 69077253 69077276 -52180254 + AT_rich Low_complexity Low_complexity 1 23 0 1 1112 4347 100 26 0 chr12 69077476 69078095 -52179435 - Lx3_Mus LINE L1 -3 7006 6372 1 1112 1800 80 0 0 chr12 69078095 69078332 -52179198 + Lx3_Mus LINE L1 5303 5539 -347 1 1112 2337 112 10 32 chr12 69078331 69078735 -52178795 + Lx3_Mus LINE L1 5936 6330 -679 1 1112 232 298 103 17 chr12 69079474 69079590 -52177940 - MLT1J LTR MaLR -379 133 8 1 1112 7914 61 1 0 chr12 69080107 69081191 -52176339 - L1_Mus1 LINE L1 0 6567 5588 1 1112 588 14 0 0 chr12 69081207 69081276 -52176254 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1112 665 73 10 0 chr12 69081968 69082064 -52175466 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 1112 665 154 6 0 chr12 69083716 69083878 -52173652 + (TCTA)n Simple_repeat Simple_repeat 1 163 0 1 1112 387 0 0 0 chr12 69084163 69084206 -52173324 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1112 322 350 30 24 chr12 69084473 69084637 -52172893 + L1M2 LINE L1 3910 4074 -2069 1 1112 570 299 31 36 chr12 69084692 69084914 -52172616 - Lx6 LINE L1 -1260 6200 5980 1 1112 457 303 38 55 chr12 69084904 69085236 -52172294 + L1M2 LINE L1 5337 5666 -502 1 1112 2358 123 60 0 chr12 69085235 69085602 -52171928 + Lx3C LINE L1 6433 6912 -146 1 1112 1094 251 20 32 chr12 69086067 69086409 -52171121 + RLTR15 LTR ERVK 1 338 -21 1 1112 6316 108 7 20 chr12 69087372 69088319 -52169211 + L1Md_F LINE L1 157 1091 -5428 1 1112 9299 54 0 0 chr12 69088317 69089473 -52168057 + L1Md_F2 LINE L1 4430 5585 -298 1 1112 7919 53 2 1 chr12 69089474 69090464 -52167066 + L1Md_F2 LINE L1 5587 6577 -5 1 1112 23 0 0 0 chr12 69090481 69090504 -52167026 + AT_rich Low_complexity Low_complexity 1 23 0 1 1112 401 273 149 27 chr12 69091525 69091713 -52165817 + B3A SINE B2 6 216 0 1 1112 13741 121 8 1 chr12 69093764 69095311 -52162219 - L1_Mus3 LINE L1 -353 6285 4732 1 1112 320 0 25 0 chr12 69095311 69095351 -52162179 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1 1112 13741 142 10 3 chr12 69095351 69096440 -52161090 - L1_Mus3 LINE L1 -1152 4731 3629 1 1112 5971 140 16 46 chr12 69096442 69098032 -52159498 - L1VL4 LINE L1 -1725 1834 303 1 1112 28 48 0 0 chr12 69098044 69098086 -52159444 + AT_rich Low_complexity Low_complexity 1 42 0 1 1112 291 336 8 15 chr12 69098448 69098581 -52158949 + L1M5 LINE L1 2636 2767 -3379 1 1112 202 164 17 52 chr12 69099313 69099371 -52158159 + T-rich Low_complexity Low_complexity 3 58 0 1 1112 324 0 0 0 chr12 69099373 69099409 -52158121 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1112 1820 105 26 4 chr12 69099418 69099685 -52157845 - L1_Mus3 LINE L1 -22 6616 6344 1 1112 25 0 0 0 chr12 69099768 69099793 -52157737 + AT_rich Low_complexity Low_complexity 1 25 0 1 1112 518 294 32 0 chr12 69099974 69100100 -52157430 + B1F SINE Alu 11 140 -9 1 1112 21 36 0 0 chr12 69100158 69100186 -52157344 + AT_rich Low_complexity Low_complexity 1 28 0 1 1112 253 348 32 32 chr12 69101546 69101694 -52155836 + B1F SINE Alu 2 149 0 1 1112 503 131 40 73 chr12 69102288 69102412 -52155118 + Lx4B LINE L1 6935 7054 -4 1 1112 5723 89 58 8 chr12 69102582 69103602 -52153928 - L1Md_F3 LINE L1 -16 6568 5485 1 1112 1317 92 11 5 chr12 69103890 69104076 -52153454 + B2_Mm2 SINE B2 1 187 -8 1 1112 519 235 17 0 chr12 69104083 69104198 -52153332 - Lx9 LINE L1 -466 7178 7062 1 1112 22 35 0 0 chr12 69104896 69104925 -52152605 + AT_rich Low_complexity Low_complexity 1 29 0 1 1112 240 344 30 8 chr12 69106185 69106317 -52151213 + L1MC LINE L1 5461 5595 -2190 1 1112 1204 276 84 3 chr12 69106317 69106687 -52150843 + MTD LTR MaLR 3 402 -17 1 1112 22 35 0 0 chr12 69106909 69106938 -52150592 + AT_rich Low_complexity Low_complexity 1 29 0 1 1112 309 109 0 0 chr12 69107450 69107505 -52150025 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1112 2008 70 0 4 chr12 69107583 69107857 -52149673 - L1_Mus4 LINE L1 0 6636 6364 1 1112 275 238 16 16 chr12 69108115 69108179 -52149351 + Lx8 LINE L1 7229 7292 -181 1 1112 4732 220 24 34 chr12 69108233 69109383 -52148147 + Lx2B LINE L1 5857 6995 -5 1 1112 387 0 0 0 chr12 69109719 69109762 -52147768 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1112 236 130 22 0 chr12 69109762 69109808 -52147722 + GA-rich Low_complexity Low_complexity 2 48 0 1 1112 305 336 9 0 chr12 69109958 69110068 -52147462 + MER63D DNA AcHobo 11 121 -940 1 1112 274 237 51 0 chr12 69110073 69110132 -52147398 + PB1D9 SINE Alu 6 67 -53 1 1112 243 0 0 0 chr12 69111597 69111624 -52145906 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1112 272 346 38 27 chr12 69112811 69112995 -52144535 - MLT2B1 LTR ERVL -327 193 8 1 1112 448 93 27 0 chr12 69113512 69113587 -52143943 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1112 333 81 48 0 chr12 69113689 69113751 -52143779 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1112 213 39 0 0 chr12 69113841 69113867 -52143663 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1112 21 71 0 0 chr12 69114415 69114457 -52143073 + AT_rich Low_complexity Low_complexity 1 42 0 1 1112 6434 75 2 1 chr12 69115333 69116217 -52141313 - L1_Mus1 LINE L1 0 6567 5723 1 1112 3060 75 2 0 chr12 69116219 69116630 -52140900 + L1_Mm LINE L1 5129 5540 -343 1 1112 2474 301 68 39 chr12 69117351 69118364 -52139166 + Lx9 LINE L1 6367 7409 -235 1 1112 659 12 12 0 chr12 69118370 69118450 -52139080 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1112 389 44 59 0 chr12 69118450 69118517 -52139013 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1112 2355 101 3 0 chr12 69118597 69118923 -52138607 - ORR1A2 LTR MaLR 0 327 1 1 1112 691 336 66 15 chr12 69118974 69119246 -52138284 + Lx8 LINE L1 7014 7299 -174 1 1112 246 165 10 99 chr12 69119231 69119332 -52138198 + Lx9 LINE L1 7426 7517 -127 1 1112 405 0 0 0 chr12 69119334 69119379 -52138151 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1112 210 222 0 0 chr12 69119383 69119437 -52138093 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1 1112 260 229 219 0 chr12 69119437 69119542 -52137988 + Lx8 LINE L1 7344 7471 -2 1 1112 330 318 38 38 chr12 69120318 69120475 -52137055 - Lx9 LINE L1 -275 7369 7213 1 1112 204 125 0 0 chr12 69120602 69120634 -52136896 + (CTG)n Simple_repeat Simple_repeat 1 32 0 1 1112 405 0 0 0 chr12 69120657 69120702 -52136828 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 1 1112 493 197 126 39 chr12 69120713 69120840 -52136690 - B1_Mus1 SINE Alu 0 148 11 1 1112 4421 138 27 1 chr12 69121432 69122137 -52135393 + Lx2 LINE L1 6263 6985 -12 1 1112 23 33 0 0 chr12 69122344 69122374 -52135156 + AT_rich Low_complexity Low_complexity 1 30 0 1 1112 362 338 45 0 chr12 69122441 69122574 -52134956 + B1F1 SINE Alu 5 143 -6 1 1112 713 296 53 14 chr12 69122799 69123008 -52134522 - Lx6 LINE L1 -55 7405 7189 1 1112 335 113 14 0 chr12 69123507 69123578 -52133952 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 1 1112 988 116 0 20 chr12 69123578 69123727 -52133803 - B1_Mm SINE Alu -1 146 1 1 1112 258 32 0 0 chr12 69125943 69125974 -52131556 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1112 294 412 44 40 chr12 69126815 69127065 -52130465 + LTR16A LTR ERVL 180 430 -21 1 1112 364 254 53 26 chr12 69127143 69127256 -52130274 + PB1D7 SINE Alu 5 120 0 1 1112 24 0 0 0 chr12 69127352 69127376 -52130154 + AT_rich Low_complexity Low_complexity 1 24 0 1 1112 24 0 0 0 chr12 69127472 69127496 -52130034 + AT_rich Low_complexity Low_complexity 1 24 0 1 1112 26 30 0 0 chr12 69128101 69128134 -52129396 + AT_rich Low_complexity Low_complexity 1 33 0 1 1112 534 289 14 14 chr12 69128965 69129143 -52128387 + B3 SINE B2 10 187 -8 1 1112 448 322 92 69 chr12 69129317 69129634 -52127896 - Lx9 LINE L1 -740 6904 6581 1 1112 197 333 77 0 chr12 69129643 69129694 -52127836 - MER5A DNA MER1_type -75 114 58 1 1112 183 42 0 0 chr12 69129694 69129718 -52127812 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 1112 197 333 77 0 chr12 69129718 69129744 -52127786 - MER5A DNA MER1_type -132 57 32 1 1112 28 48 0 0 chr12 69130322 69130364 -52127166 + AT_rich Low_complexity Low_complexity 1 42 0 1 1112 189 74 0 0 chr12 69130838 69130865 -52126665 + (AAATG)n Simple_repeat Simple_repeat 2 28 0 1 1112 243 330 10 10 chr12 69132268 69132366 -52125164 + B2_Mm2 SINE B2 3 100 -95 1 1112 435 171 28 19 chr12 69132440 69132547 -52124983 + Lx9 LINE L1 7526 7633 -11 1 1112 180 111 0 0 chr12 69132837 69132864 -52124666 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1112 704 326 24 45 chr12 69132882 69133174 -52124356 - B4A SINE B4 -4 288 3 1 1112 526 232 0 78 chr12 69133187 69133226 -52124304 - Lx7 LINE L1 0 7696 7661 1 1112 270 0 43 43 chr12 69133226 69133273 -52124257 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1112 1160 43 0 0 chr12 69133273 69133411 -52124119 - B1_Mus2 SINE Alu -9 138 1 1 1112 526 232 0 78 chr12 69133411 69133524 -52124006 - Lx7 LINE L1 -36 7660 7556 1 1112 246 32 0 0 chr12 69133548 69133579 -52123951 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1112 942 279 60 23 chr12 69134795 69135143 -52122387 + Lx8 LINE L1 5613 5973 -1500 1 1112 204 97 0 0 chr12 69135156 69135187 -52122343 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 2 1112 21 36 0 0 chr12 69135282 69135310 -52122220 + AT_rich Low_complexity Low_complexity 1 28 0 2 1112 927 131 69 106 chr12 69135917 69136058 -52121472 + B2_Mm2 SINE B2 10 156 -39 2 1112 192 77 0 0 chr12 69136058 69136084 -52121446 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2 1112 927 131 69 106 chr12 69136084 69136130 -52121400 + B2_Mm2 SINE B2 157 190 -5 2 1112 15282 57 209 26 chr12 69137643 69140719 -52116811 - L1Md_F LINE L1 -1781 4102 466 2 1112 428 202 0 0 chr12 69140720 69140809 -52116721 - L1Md_F LINE L1 -6291 325 237 2 1112 13429 25 0 0 chr12 69140806 69142386 -52115144 + L1Md_T LINE L1 4007 5586 -297 2 1112 7932 56 1 2 chr12 69142386 69143382 -52114148 + L1Md_T LINE L1 5587 6581 -1 2 1112 209 184 20 20 chr12 69143550 69143600 -52113930 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1112 229 214 12 48 chr12 69144218 69144346 -52113184 + A-rich Low_complexity Low_complexity 1 123 0 2 1112 600 140 110 0 chr12 69145338 69145438 -52112092 + RMER6C LTR ERVK 1 111 -579 2 1112 497 162 55 126 chr12 69145417 69145544 -52111986 + MT2B LTR ERVL 175 292 -309 2 1112 280 161 16 0 chr12 69145495 69145557 -52111973 + ORR1B1-int LTR MaLR 633 695 -814 2 1112 1724 166 27 43 chr12 69145564 69145936 -52111594 + RMER6C LTR ERVK 325 690 0 2 1112 815 242 117 11 chr12 69146097 69146285 -52111245 + Lx7 LINE L1 6787 6994 -702 2 1112 201 185 0 18 chr12 69146460 69146515 -52111015 + T-rich Low_complexity Low_complexity 1 54 0 2 1112 380 331 17 0 chr12 69147299 69147474 -52110056 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 2 1112 217 345 20 33 chr12 69147389 69147542 -52109988 + (TATATG)n Simple_repeat Simple_repeat 5 155 0 2 1112 224 373 15 0 chr12 69147543 69147610 -52109920 - RSINE1 SINE B4 -1 164 97 2 1112 306 355 78 65 chr12 69147578 69147810 -52109720 - B4 SINE B4 -18 274 40 2 1112 1389 236 68 17 chr12 69147887 69148241 -52109289 - ORR1D1 LTR MaLR 0 374 3 2 1112 349 285 102 43 chr12 69148264 69148377 -52109153 - L1MCa LINE L1 -5170 1338 1213 2 1112 369 0 0 0 chr12 69148377 69148418 -52109112 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1112 349 285 102 43 chr12 69148418 69148491 -52109039 - L1MCa LINE L1 -5296 1212 1142 2 1112 197 33 33 0 chr12 69148578 69148608 -52108922 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1112 681 303 92 45 chr12 69148684 69149171 -52108359 - L1MCa LINE L1 -5940 568 59 2 1112 4310 105 92 3 chr12 69149374 69150035 -52107495 - Lx3C LINE L1 -3 6973 6254 2 1112 1850 186 151 50 chr12 69151153 69151460 -52106070 + RLTR28 LTR ERVL 1 302 -222 2 1112 198 0 0 0 chr12 69151460 69151482 -52106048 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2 1112 1850 186 151 50 chr12 69151482 69151637 -52105893 + RLTR28 LTR ERVL 303 509 -15 2 1112 297 0 0 0 chr12 69151717 69151750 -52105780 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1112 367 307 55 0 chr12 69151770 69151897 -52105633 - B3A SINE B2 -61 137 4 2 1112 405 309 193 41 chr12 69152637 69153123 -52104407 - L1M5 LINE L1 -2603 3543 2984 2 1112 970 246 10 0 chr12 69153450 69153657 -52103873 + B3 SINE B2 1 209 -7 2 1112 341 327 67 57 chr12 69153674 69154005 -52103525 - L1M5 LINE L1 -3513 2633 2300 2 1112 476 404 11 0 chr12 69154290 69154478 -52103052 - ID_B1 SINE B4 -34 190 1 2 1112 1256 81 0 21 chr12 69155057 69155295 -52102235 + (GAAA)n Simple_repeat Simple_repeat 1 233 0 2 1112 486 317 156 16 chr12 69155541 69155804 -52101726 + L1M4b LINE L1 1576 1874 -5460 2 1112 584 67 11 0 chr12 69155804 69155894 -52101636 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 2 1112 486 317 156 16 chr12 69155894 69155938 -52101592 + L1M4b LINE L1 1875 1926 -5408 2 1112 514 298 50 0 chr12 69155964 69156105 -52101425 + B3A SINE B2 1 148 -50 2 1112 483 73 0 0 chr12 69156105 69156173 -52101357 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1112 29 0 0 0 chr12 69156178 69156207 -52101323 + AT_rich Low_complexity Low_complexity 1 29 0 2 1112 590 339 97 33 chr12 69156214 69157006 -52100524 + L1M4b LINE L1 4220 5074 -1932 2 1112 1569 148 54 63 chr12 69157006 69157338 -52100192 - ORR1A4 LTR MaLR 0 329 1 2 1112 590 339 97 33 chr12 69157338 69157461 -52100069 + L1M4b LINE L1 5075 5194 -1812 2 1112 484 305 146 34 chr12 69157494 69158118 -52099412 + L1M4b LINE L1 5276 5969 -1037 2 1112 19217 71 5 3 chr12 69158137 69158664 -52098866 + L1Md_F2 LINE L1 3008 3529 -2354 2 1112 2821 116 34 67 chr12 69158664 69159199 -52098331 - MURVY-LTR LTR ERV1 -2 517 1 2 1112 19217 71 5 3 chr12 69159199 69161243 -52096287 + L1Md_F2 LINE L1 3530 5585 -298 2 1112 6968 93 4 23 chr12 69161244 69162255 -52095275 + L1Md_F2 LINE L1 5587 6578 -4 2 1112 446 225 0 0 chr12 69162456 69162545 -52094985 + PB1D10 SINE Alu 1 89 -28 2 1112 486 0 0 0 chr12 69162698 69162752 -52094778 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1112 728 294 129 41 chr12 69162772 69163307 -52094223 + L1MC2 LINE L1 5302 5883 -461 2 1112 932 207 57 9 chr12 69163325 69163535 -52093995 + Lx4B LINE L1 6076 6295 -763 2 1112 433 155 48 0 chr12 69163529 69163613 -52093917 - Lx LINE L1 -572 6082 5995 2 1112 1176 221 62 70 chr12 69163614 69164073 -52093457 - MT2A LTR ERVL -28 505 1 2 1112 26 0 0 0 chr12 69164305 69164331 -52093199 + AT_rich Low_complexity Low_complexity 1 26 0 2 1112 1908 287 52 14 chr12 69164385 69164965 -52092565 - Lx6 LINE L1 0 7460 6859 2 1112 23 33 0 0 chr12 69165369 69165399 -52092131 + AT_rich Low_complexity Low_complexity 1 30 0 2 1112 408 20 0 0 chr12 69165665 69165714 -52091816 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1112 395 38 0 19 chr12 69165741 69165795 -52091735 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1112 1769 194 43 3 chr12 69167163 69167509 -52090021 + MTC LTR MaLR 58 417 -4 2 1112 1406 265 87 3 chr12 69167679 69168058 -52089472 + MTD LTR MaLR 9 419 0 2 1112 1281 203 70 0 chr12 69168455 69168726 -52088804 + MTC LTR MaLR 1 290 -131 2 1112 4045 218 12 32 chr12 69168727 69168770 -52088760 - MERVL_2A-int LTR ERVL -259 5502 5472 2 1112 4387 80 5 2 chr12 69168770 69169362 -52088168 - L1_Mus2 LINE L1 0 6566 5973 2 1112 4045 218 12 32 chr12 69169362 69170201 -52087329 - MERVL_2A-int LTR ERVL -290 5471 4637 2 1112 27272 88 48 17 chr12 69170201 69175394 -52082136 + L1Md_A LINE L1 448 5053 -830 2 1112 17168 186 40 10 chr12 69175397 69178644 -52078886 - MERVL_2A-int LTR ERVL -1148 4613 1269 2 1112 895 261 78 63 chr12 69178661 69178717 -52078813 - MT2B LTR ERVL 0 601 541 2 1112 378 0 0 0 chr12 69178717 69178759 -52078771 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1112 895 261 114 76 chr12 69178759 69179169 -52078361 - MT2B LTR ERVL -61 540 3 2 1112 705 289 48 29 chr12 69179396 69179666 -52077864 - L1_Mur3 LINE L1 -491 5389 5109 2 1112 1641 141 74 62 chr12 69179666 69179991 -52077539 - ORR1A4 LTR MaLR 0 329 1 2 1112 705 289 48 29 chr12 69179991 69180030 -52077500 - L1_Mur3 LINE L1 -772 5108 5074 2 1112 537 303 70 43 chr12 69180257 69180671 -52076859 + L1MA9 LINE L1 5882 6306 -6 2 1112 461 347 11 50 chr12 69182354 69182533 -52074997 - Lx8 LINE L1 -168 7305 7134 2 1112 276 30 0 0 chr12 69183107 69183140 -52074390 + (CAA)n Simple_repeat Simple_repeat 3 35 0 2 1112 227 313 15 0 chr12 69183429 69183496 -52074034 + MLT2D LTR ERVL 72 139 -376 2 1112 313 278 84 46 chr12 69183553 69183759 -52073771 + MLT2D LTR ERVL 289 515 -45 2 1112 234 257 0 103 chr12 69183760 69183838 -52073692 + ID4_ SINE ID 6 75 -8 2 1112 254 51 51 0 chr12 69183881 69183920 -52073610 + (CATA)n Simple_repeat Simple_repeat 2 42 0 2 1112 3306 52 2 0 chr12 69184083 69184490 -52073040 - L1_Mus1 LINE L1 -3 6564 6157 2 1112 3149 36 8 0 chr12 69184677 69185065 -52072465 + L1Md_F2 LINE L1 6187 6577 -5 2 1112 5332 217 21 49 chr12 69185145 69186422 -52071108 + MTC-int LTR MaLR 1 1241 -17 2 1112 2764 165 123 22 chr12 69187842 69188469 -52069061 + RMER6C LTR ERVK 1 690 0 2 1112 37 52 0 0 chr12 69188528 69188586 -52068944 + AT_rich Low_complexity Low_complexity 1 58 0 2 1112 281 252 10 10 chr12 69188684 69188784 -52068746 + (CAAA)n Simple_repeat Simple_repeat 2 101 0 2 1112 498 129 0 0 chr12 69188809 69188894 -52068636 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 1112 1453 244 60 29 chr12 69189039 69189423 -52068107 - Lx6 LINE L1 -177 7283 6888 2 1112 821 220 6 0 chr12 69189461 69189620 -52067910 - Lx6 LINE L1 -777 6683 6524 2 1112 456 279 132 48 chr12 69189621 69189870 -52067660 - RLTR24 LTR ERV1 0 529 260 2 1112 1023 217 5 10 chr12 69190072 69190281 -52067249 - Lx6 LINE L1 -934 6526 6319 2 1112 1255 268 48 74 chr12 69190403 69191023 -52066507 + Lx9 LINE L1 7040 7643 -1 2 1112 1234 67 0 48 chr12 69191040 69191229 -52066301 + L1_Mus1 LINE L1 6388 6567 0 2 1112 192 77 0 0 chr12 69191246 69191272 -52066258 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1112 243 0 0 0 chr12 69191425 69191452 -52066078 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1112 2221 67 13 3 chr12 69191463 69191764 -52065766 + L1_Mus1 LINE L1 6263 6566 -1 2 1112 354 45 0 0 chr12 69192177 69192221 -52065309 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2 1112 285 96 154 0 chr12 69192729 69192781 -52064749 - L1_Mur2 LINE L1 -2175 3702 3643 2 1112 3877 179 109 22 chr12 69192781 69193581 -52063949 + RMER19B LTR ERVK 1 869 -33 2 1112 1738 35 0 0 chr12 69193581 69193783 -52063747 + L1Md_F2 LINE L1 5385 5586 -297 2 1112 7682 66 4 6 chr12 69193784 69194781 -52062749 + L1Md_F2 LINE L1 5588 6582 0 2 1112 254 197 33 0 chr12 69194783 69194844 -52062686 + RMER19B LTR ERVK 840 902 0 2 1112 3725 137 11 55 chr12 69194847 69195610 -52061920 - L1_Mur1 LINE L1 -2232 3654 2926 2 1112 7373 118 29 1 chr12 69196562 69197974 -52059556 - Lx LINE L1 -4 6650 5206 2 1112 2640 169 15 0 chr12 69197972 69198451 -52059079 + L1_Mur1 LINE L1 4641 5126 -760 2 1112 453 171 8 105 chr12 69198454 69198578 -52058952 + MT2B LTR ERVL 153 264 -337 2 1112 1084 51 0 0 chr12 69198476 69198613 -52058917 + B1_Mm SINE Alu 11 147 0 2 1112 249 43 42 21 chr12 69198630 69198678 -52058852 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2 1112 1074 75 0 45 chr12 69198900 69199054 -52058476 + B1_Mm SINE Alu 1 147 0 2 1112 917 126 17 11 chr12 69199387 69199563 -52057967 + CT-rich Low_complexity Low_complexity 4 180 0 2 1112 261 0 0 0 chr12 69199564 69199593 -52057937 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 2 1112 312 336 50 16 chr12 69199600 69199721 -52057809 - MER63A DNA AcHobo -85 125 1 2 1112 276 224 15 0 chr12 69201839 69201906 -52055624 + B4A SINE B4 8 75 -217 2 1112 387 41 0 0 chr12 69202199 69202248 -52055282 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1112 276 253 50 12 chr12 69203045 69203125 -52054405 + 5S rRNA rRNA 8 90 -31 2 1112 190 0 32 32 chr12 69203953 69203984 -52053546 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1112 202 347 30 20 chr12 69204860 69204960 -52052570 - MIRc SINE MIR -7 261 161 2 1112 2380 97 0 37 chr12 69205061 69205413 -52052117 + Lx LINE L1 6143 6481 -173 2 1113 4217 287 72 23 chr12 69206593 69208258 -52049272 - Lx7 LINE L1 -17 7679 5732 2 1113 192 40 0 0 chr12 69208647 69208672 -52048858 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1113 1749 149 65 43 chr12 69208700 69209022 -52048508 - ORR1A4 LTR MaLR 0 329 1 3 1113 24 0 0 0 chr12 69210299 69210323 -52047207 + AT_rich Low_complexity Low_complexity 1 24 0 3 1113 192 40 0 0 chr12 69210578 69210603 -52046927 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 3 1113 3995 142 14 6 chr12 69210741 69211114 -52046416 + L1_Mus3 LINE L1 5223 5601 -282 3 1113 666 37 0 0 chr12 69211114 69211195 -52046335 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 1113 7422 79 27 1 chr12 69211195 69212205 -52045325 + L1_Mus3 LINE L1 5603 6638 0 3 1113 386 223 60 43 chr12 69212525 69212642 -52044888 - Lx7 LINE L1 -584 7112 6994 3 1113 24 32 0 0 chr12 69212660 69212691 -52044839 + AT_rich Low_complexity Low_complexity 1 31 0 3 1113 1495 312 65 32 chr12 69213027 69213193 -52044337 + Lx8 LINE L1 6178 6339 -1134 3 1113 207 0 0 0 chr12 69213193 69213216 -52044314 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1113 1495 312 65 32 chr12 69213216 69213738 -52043792 + Lx8 LINE L1 6340 6889 -584 3 1113 13870 62 2 4 chr12 69213736 69215871 -52041659 - L1Md_F2 LINE L1 -354 6228 4104 3 1113 1843 91 121 43 chr12 69215873 69216195 -52041335 + L1Md_F2 LINE L1 6217 6563 -19 3 1113 1757 152 0 3 chr12 69216220 69216510 -52041020 - Lx2 LINE L1 -587 6410 6122 3 1113 2378 105 3 14 chr12 69216508 69216857 -52040673 + Lx2 LINE L1 6420 6764 -233 3 1113 266 247 40 83 chr12 69217049 69217225 -52040305 + RLTR9E LTR ERVK 221 383 0 3 1113 216 67 0 0 chr12 69217227 69217257 -52040273 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1113 597 325 52 30 chr12 69217257 69217625 -52039905 + Lx7 LINE L1 6857 7232 -464 3 1113 282 133 115 16 chr12 69217635 69217696 -52039834 + MLT1A1 LTR MaLR 306 372 -36 3 1113 4425 95 8 2 chr12 69218357 69218969 -52038561 - L1_Mus3 LINE L1 -7 6631 6016 3 1113 495 118 21 0 chr12 69218969 69219064 -52038466 + L1Md_T LINE L1 5694 5828 -484 3 1113 229 292 77 83 chr12 69219066 69219234 -52038296 - RLTR25A LTR ERVK 0 1103 937 3 1113 200 207 36 24 chr12 69219362 69219446 -52038084 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1113 7505 31 0 0 chr12 69219775 69220654 -52036876 - L1Md_A LINE L1 0 6582 5704 3 1113 22 0 0 0 chr12 69222136 69222158 -52035372 + AT_rich Low_complexity Low_complexity 1 22 0 3 1113 498 328 32 32 chr12 69222979 69223165 -52034365 - MLT2B4 LTR ERVL -370 186 1 3 1113 1462 181 48 30 chr12 69223342 69223810 -52033720 - RMER12B LTR ERVK 0 1404 862 3 1113 2237 197 24 6 chr12 69224349 69225017 -52032513 + Lx3C LINE L1 844 1523 -2391 3 1113 13548 173 126 18 chr12 69225004 69225100 -52032430 + Lx3C LINE L1 2395 2491 -3386 3 1113 7031 57 17 11 chr12 69225100 69226024 -52031506 + L1Md_F2 LINE L1 5649 6578 -4 3 1113 13548 176 113 17 chr12 69226024 69230107 -52027423 + Lx3C LINE L1 2492 6974 -2 3 1113 3797 205 83 10 chr12 69230143 69230960 -52026570 - RMER12B LTR ERVK -527 877 1 3 1113 26 82 0 0 chr12 69232412 69232473 -52025057 + AT_rich Low_complexity Low_complexity 1 61 0 3 1113 28 0 0 0 chr12 69233209 69233237 -52024293 + AT_rich Low_complexity Low_complexity 1 28 0 3 1113 294 29 0 0 chr12 69233879 69233914 -52023616 + (TATG)n Simple_repeat Simple_repeat 3 37 0 3 1113 970 228 5 14 chr12 69233914 69234128 -52023402 - Lx9 LINE L1 -181 7463 7252 3 1113 322 67 22 0 chr12 69234453 69234498 -52023032 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1113 651 144 0 0 chr12 69234498 69234609 -52022921 + (CA)n Simple_repeat Simple_repeat 2 112 0 3 1113 4529 58 3 2 chr12 69234714 69235283 -52022247 + L1_Mus3 LINE L1 6062 6631 -7 3 1113 513 0 0 0 chr12 69235792 69235849 -52021681 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 1113 30 27 0 0 chr12 69237191 69237228 -52020302 + AT_rich Low_complexity Low_complexity 1 37 0 3 1113 495 0 0 0 chr12 69237408 69237463 -52020067 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1113 336 214 0 0 chr12 69238004 69238121 -52019409 + (CA)n Simple_repeat Simple_repeat 2 118 0 3 1113 4427 128 22 15 chr12 69238121 69238938 -52018592 - RLTR13D4 LTR ERVK 0 1033 1 3 1113 951 89 82 0 chr12 69239399 69239534 -52017996 - B1_Mus2 SINE Alu 0 147 2 3 1113 855 67 183 0 chr12 69240481 69240601 -52016929 + B1_Mus1 SINE Alu 1 142 -6 3 1113 26 0 0 0 chr12 69240603 69240629 -52016901 + AT_rich Low_complexity Low_complexity 1 26 0 3 1113 495 0 0 0 chr12 69240715 69240770 -52016760 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1113 989 277 33 81 chr12 69241608 69242005 -52015525 - MTE2a LTR MaLR -1 378 1 3 1113 3446 67 0 0 chr12 69243315 69243750 -52013780 - L1_Mus1 LINE L1 -2 6565 6131 3 1113 1052 184 37 50 chr12 69243890 69244108 -52013422 + RMER13B LTR ERVK 1 215 -693 3 1113 405 0 0 0 chr12 69245743 69245788 -52011742 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1113 902 113 78 26 chr12 69247135 69247289 -52010241 + B2_Mm2 SINE B2 3 164 -31 3 1113 423 0 0 0 chr12 69247298 69247345 -52010185 + (GGA)n Simple_repeat Simple_repeat 2 48 0 3 1113 526 351 71 53 chr12 69248037 69248320 -52009210 + B4A SINE B4 1 288 -4 3 1113 288 266 26 68 chr12 69251417 69251534 -52005996 + L1MEc LINE L1 38 149 -6251 3 1113 393 334 146 36 chr12 69251654 69252039 -52005491 + L1MEc LINE L1 325 751 -5649 3 1113 453 304 120 42 chr12 69252070 69252322 -52005208 + L1MEc LINE L1 4157 4422 -1897 3 1113 306 0 0 0 chr12 69252322 69252356 -52005174 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1113 453 304 120 42 chr12 69252356 69252412 -52005118 + L1MEc LINE L1 4423 4489 -1830 3 1113 1015 158 10 25 chr12 69252456 69252642 -52004888 + Lx4B LINE L1 6858 7040 -18 3 1113 288 53 0 0 chr12 69252642 69252680 -52004850 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 3 1113 1015 158 10 25 chr12 69252680 69252694 -52004836 + Lx4B LINE L1 7041 7055 -3 3 1113 252 0 0 0 chr12 69252702 69252730 -52004800 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1113 411 304 105 16 chr12 69252754 69253068 -52004462 + L1MC LINE L1 4512 4853 -1293 3 1113 432 288 103 45 chr12 69253139 69253470 -52004060 + L1ME2 LINE L1 5531 5880 -284 3 1113 568 293 43 24 chr12 69253800 69254010 -52003520 + B3 SINE B2 1 214 -2 3 1113 1493 68 5 0 chr12 69254935 69255126 -52002404 - B2_Mm1t SINE B2 0 193 2 3 1113 562 36 0 35 chr12 69257542 69257629 -51999901 + (TTTTG)n Simple_repeat Simple_repeat 1 84 0 3 1113 1036 96 0 0 chr12 69257629 69257764 -51999766 - B1_Mus1 SINE Alu -13 135 1 3 1113 630 287 108 75 chr12 69258281 69258790 -51998740 + L1MA9 LINE L1 5772 6297 -15 3 1113 2829 68 8 30 chr12 69259014 69259407 -51998123 - L1_Mus1 LINE L1 0 6567 6184 3 1113 3490 71 0 0 chr12 69259407 69259857 -51997673 + L1_Mus1 LINE L1 5718 6167 -399 3 1113 393 102 0 0 chr12 69261238 69261297 -51996233 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1113 361 276 11 0 chr12 69261338 69261425 -51996105 + RLTR18B LTR ERVK 1 88 -424 3 1113 1623 164 15 89 chr12 69261468 69261966 -51995564 - RMER17C LTR ERVK -519 439 16 3 1113 1534 135 20 4 chr12 69262076 69262328 -51995202 - L1_Mus4 LINE L1 -14 6622 6367 3 1113 691 296 47 82 chr12 69262465 69262773 -51994757 + RLTR18B LTR ERVK 190 605 -11 3 1113 268 229 14 14 chr12 69263137 69263208 -51994322 + RLTR24 LTR ERV1 8 78 -451 3 1113 2218 167 36 3 chr12 69264201 69264591 -51992939 - MTB_Mm LTR MaLR -4 403 1 3 1113 1010 299 22 11 chr12 69265435 69265712 -51991818 - MTD LTR MaLR -20 399 120 3 1113 639 250 17 72 chr12 69265717 69265898 -51991632 + ORR1E LTR MaLR 181 351 -8 3 1113 539 185 34 7 chr12 69265981 69266128 -51991402 - Lx9 LINE L1 -8 7636 7486 3 1113 297 0 0 0 chr12 69266128 69266161 -51991369 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1113 301 118 0 0 chr12 69266179 69266230 -51991300 + L1_Mur2 LINE L1 4238 4288 -1589 3 1113 1804 161 46 41 chr12 69266213 69266601 -51990929 + L1_Mur2 LINE L1 4608 4997 -880 3 1113 281 284 15 8 chr12 69266603 69266736 -51990794 + Lx7 LINE L1 4668 4772 -1108 3 1113 512 203 64 16 chr12 69266756 69266881 -51990649 + URR1A DNA MER1_type 59 189 -37 3 1113 289 261 53 33 chr12 69266889 69267044 -51990486 + Lx7 LINE L1 5639 5830 -470 3 1113 1130 55 0 14 chr12 69267044 69267191 -51990339 + B1_Mm SINE Alu 3 147 0 3 1113 447 152 0 0 chr12 69267191 69267270 -51990260 + A-rich Low_complexity Low_complexity 1 79 0 3 1113 1181 81 110 0 chr12 69267329 69267502 -51990028 + B2_Mm2 SINE B2 3 194 -1 3 1113 4932 144 9 14 chr12 69267509 69267889 -51989641 + L1_Mur2 LINE L1 4979 5362 -515 3 1113 836 181 45 11 chr12 69267889 69268068 -51989462 + B2_Mm2 SINE B2 3 187 -8 3 1113 4932 144 9 14 chr12 69268068 69268530 -51989000 + L1_Mur2 LINE L1 5363 5817 -60 3 1113 391 306 62 125 chr12 69269031 69269319 -51988211 - Charlie1a DNA MER1_type -908 547 278 3 1113 3132 72 9 36 chr12 69269503 69269948 -51987582 - L1Md_F2 LINE L1 0 6582 6150 3 1113 1735 66 0 0 chr12 69269948 69270176 -51987354 + L1_Mm LINE L1 3646 3873 -2010 3 1113 373 295 64 7 chr12 69270176 69270316 -51987214 + MLT1A0 LTR MaLR 194 341 -24 3 1113 219 36 0 0 chr12 69270443 69270471 -51987059 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1113 297 352 124 15 chr12 69270974 69271176 -51986354 + B4 SINE B4 2 225 -67 3 1113 570 289 0 15 chr12 69271193 69271330 -51986200 + B1_Mur1 SINE Alu 15 149 0 3 1113 393 22 0 0 chr12 69271403 69271449 -51986081 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1113 669 177 6 9 chr12 69271451 69271792 -51985738 + GA-rich Low_complexity Low_complexity 1 340 0 3 1113 1324 183 58 32 chr12 69272101 69272412 -51985118 + L1_Mur3 LINE L1 4238 4556 -1324 3 1113 231 254 63 0 chr12 69272402 69272465 -51985065 + L1_Mur3 LINE L1 5028 5094 -786 3 1113 471 293 31 82 chr12 69272463 69272930 -51984600 + L1M2 LINE L1 3491 3922 -2218 3 1113 492 328 81 74 chr12 69272953 69273514 -51984016 - RMER13A LTR ERVK -160 700 186 3 1113 769 307 139 35 chr12 69273671 69274218 -51983312 + L1M2 LINE L1 3914 4485 -1658 3 1113 180 77 0 0 chr12 69274218 69274244 -51983286 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1113 769 307 139 35 chr12 69274244 69274436 -51983094 + L1M2 LINE L1 4486 4730 -1413 3 1113 495 301 80 61 chr12 69274919 69275098 -51982432 + B3A SINE B2 1 186 -30 3 1113 450 65 0 0 chr12 69275098 69275160 -51982370 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1113 448 301 80 61 chr12 69275160 69275192 -51982338 + B3 SINE B2 187 216 0 3 1113 357 308 109 27 chr12 69275602 69275822 -51981708 + LTR81C LTR ERV1? 788 1025 -128 3 1113 230 333 0 0 chr12 69276009 69276084 -51981446 + GA-rich Low_complexity Low_complexity 2 76 0 3 1113 500 68 0 14 chr12 69276337 69276411 -51981119 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1113 183 162 0 0 chr12 69277076 69277113 -51980417 + T-rich Low_complexity Low_complexity 1 37 0 3 1113 24 53 0 0 chr12 69277542 69277580 -51979950 + AT_rich Low_complexity Low_complexity 1 38 0 3 1113 22 0 0 0 chr12 69277727 69277749 -51979781 + AT_rich Low_complexity Low_complexity 1 22 0 3 1113 300 186 0 0 chr12 69277816 69277875 -51979655 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1113 21 57 0 0 chr12 69278100 69278135 -51979395 + AT_rich Low_complexity Low_complexity 1 35 0 4 1113 423 0 0 0 chr12 69279146 69279193 -51978337 + (TTA)n Simple_repeat Simple_repeat 1 47 0 4 1113 377 337 53 49 chr12 69279667 69279951 -51977579 + B4A SINE B4 2 286 -6 4 1113 261 0 0 0 chr12 69279960 69279989 -51977541 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1113 567 0 0 0 chr12 69279989 69280051 -51977479 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1113 1605 158 101 119 chr12 69280113 69280500 -51977030 - RLTR41 LTR ERV1 -66 380 1 4 1113 183 340 40 30 chr12 69281405 69281505 -51976025 - MIR3 SINE MIR -23 185 85 4 1113 510 285 24 0 chr12 69281636 69281759 -51975771 + RSINE1 SINE B4 11 136 -29 4 1113 740 241 26 21 chr12 69283018 69283209 -51974321 - MLT2D LTR ERVL -220 194 3 4 1113 508 287 66 82 chr12 69283237 69283419 -51974111 - B3A SINE B2 -11 187 9 4 1113 255 235 44 0 chr12 69283694 69283762 -51973768 - MLT1D LTR MaLR -429 76 6 4 1113 236 208 0 36 chr12 69283904 69283959 -51973571 + B2_Mm2 SINE B2 2 54 -141 4 1113 343 286 10 10 chr12 69283986 69284085 -51973445 + ORR1E-int LTR MaLR 303 401 -1179 4 1113 391 258 176 86 chr12 69284168 69284401 -51973129 + ORR1E-int LTR MaLR 717 970 -610 4 1113 662 300 50 151 chr12 69284388 69284543 -51972987 + ORR1E-int LTR MaLR 1170 1307 -273 4 1113 1177 68 0 0 chr12 69284543 69284690 -51972840 + B1_Mm SINE Alu 1 147 0 4 1113 693 270 66 66 chr12 69284690 69284772 -51972758 + ORR1E-int LTR MaLR 1143 1194 -176 4 1113 201 74 0 0 chr12 69284772 69284799 -51972731 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1113 693 260 72 35 chr12 69284799 69284961 -51972569 + ORR1E-int LTR MaLR 1195 1526 -54 4 1113 699 216 134 6 chr12 69284961 69285133 -51972397 + ORR1E LTR MaLR 1 194 -165 4 1113 9359 130 40 19 chr12 69285155 69285297 -51972233 - L1_Mur2 LINE L1 -2932 2945 2796 4 1113 342 0 0 0 chr12 69285297 69285335 -51972195 + (TTG)n Simple_repeat Simple_repeat 1 38 0 4 1113 9359 130 40 19 chr12 69285335 69286046 -51971484 - L1_Mur2 LINE L1 -3082 2795 2066 4 1113 207 0 0 0 chr12 69286046 69286069 -51971461 + (TGG)n Simple_repeat Simple_repeat 1 23 0 4 1113 9359 162 29 36 chr12 69286069 69287616 -51969914 - L1_Mur2 LINE L1 -3812 2065 545 4 1113 562 194 65 10 chr12 69287913 69288036 -51969494 - MTD LTR MaLR -16 403 256 4 1113 38 51 0 0 chr12 69288220 69288279 -51969251 + AT_rich Low_complexity Low_complexity 1 59 0 4 1113 518 0 16 0 chr12 69288488 69288550 -51968980 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1113 729 334 82 51 chr12 69288673 69289455 -51968075 + L1M5 LINE L1 3086 3891 -2255 4 1113 247 224 17 0 chr12 69289527 69289585 -51967945 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 4 1113 315 332 82 54 chr12 69289606 69289886 -51967644 + L1M5 LINE L1 5052 5339 -807 4 1113 2659 220 44 5 chr12 69290168 69290757 -51966773 - Lx2B LINE L1 -15 6985 6374 4 1113 3615 66 4 2 chr12 69290776 69291232 -51966298 - L1_Mus1 LINE L1 -1 6566 6110 4 1113 4028 176 37 5 chr12 69291235 69292009 -51965521 - Lx2B LINE L1 -629 6371 5597 4 1113 236 305 63 54 chr12 69292423 69292534 -51964996 - PB1D9 SINE Alu -8 112 1 4 1113 423 0 0 0 chr12 69292592 69292639 -51964891 + (T)n Simple_repeat Simple_repeat 1 47 0 4 1113 978 99 50 23 chr12 69294166 69294508 -51963022 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 4 1113 453 36 0 0 chr12 69294540 69294595 -51962935 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1113 21 71 0 0 chr12 69294855 69294897 -51962633 + AT_rich Low_complexity Low_complexity 1 42 0 4 1113 230 311 121 40 chr12 69294957 69295081 -51962449 + ORR1E LTR MaLR 5 138 -221 4 1113 28 0 0 0 chr12 69296072 69296100 -51961430 + AT_rich Low_complexity Low_complexity 1 28 0 4 1113 317 287 32 0 chr12 69296828 69296922 -51960608 - Lx6 LINE L1 -88 7372 7276 4 1113 210 290 92 46 chr12 69297110 69297240 -51960290 + MER5B DNA MER1_type 1 136 -42 4 1113 40 59 0 0 chr12 69298565 69298633 -51958897 + AT_rich Low_complexity Low_complexity 1 68 0 4 1113 477 47 0 0 chr12 69299011 69299075 -51958455 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1113 267 333 123 14 chr12 69299397 69299543 -51957987 - MIR SINE MIR -69 193 32 4 1113 294 328 150 47 chr12 69301368 69301860 -51955670 + L2 LINE L2 1916 2458 -961 4 1113 33 43 0 0 chr12 69302447 69302494 -51955036 + AT_rich Low_complexity Low_complexity 1 47 0 4 1113 244 274 31 10 chr12 69303766 69303862 -51953668 + GA-rich Low_complexity Low_complexity 2 99 0 4 1113 320 268 41 0 chr12 69303939 69304036 -51953494 + PB1 SINE Alu 20 120 -7 4 1113 1121 283 39 73 chr12 69304113 69304494 -51953036 + MTEb LTR MaLR 1 368 -11 4 1113 2259 322 33 58 chr12 69304503 69305008 -51952522 + MTEb-int LTR MaLR 10 512 -1068 4 1113 638 13 13 0 chr12 69305008 69305087 -51952443 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 4 1113 2259 322 33 58 chr12 69305087 69305600 -51951930 + MTEb-int LTR MaLR 513 1003 -577 4 1113 2455 234 34 9 chr12 69305600 69306155 -51951375 - Lx9 LINE L1 -483 7161 6593 4 1113 1021 239 47 0 chr12 69306152 69306386 -51951144 - Lx7 LINE L1 -640 7056 6812 4 1113 599 223 18 0 chr12 69306388 69306500 -51951030 + B1_Mur1 SINE Alu 33 146 -3 4 1113 7395 42 2 9 chr12 69306519 69307440 -51950090 + L1Md_F2 LINE L1 5667 6581 -1 4 1113 206 75 0 48 chr12 69307482 69307524 -51950006 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1113 1366 45 0 11 chr12 69307803 69307981 -51949549 - L1Md_F3 LINE L1 -54 6530 6355 4 1113 1937 216 99 25 chr12 69308246 69308731 -51948799 - Lx5 LINE L1 -694 6356 5836 4 1113 212 0 0 35 chr12 69310372 69310401 -51947129 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 4 1113 676 322 90 22 chr12 69313198 69313465 -51944065 - B4A SINE B4 -6 286 2 4 1113 1031 44 7 0 chr12 69314250 69314387 -51943143 + (TAGA)n Simple_repeat Simple_repeat 3 140 0 4 1113 33 56 0 0 chr12 69314561 69314615 -51942915 + AT_rich Low_complexity Low_complexity 1 54 0 4 1113 5030 118 58 8 chr12 69314686 69315506 -51942024 - Lx3A LINE L1 -7 6974 6114 4 1113 240 184 0 0 chr12 69315650 69315699 -51941831 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 4 1113 397 269 40 17 chr12 69315699 69315873 -51941657 + Lx9 LINE L1 7458 7635 -9 4 1113 288 0 0 0 chr12 69316797 69316829 -51940701 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1113 364 324 39 42 chr12 69317185 69317469 -51940061 - L1MA10 LINE L1 -19 6315 6033 4 1113 208 189 38 0 chr12 69317666 69317719 -51939811 + CT-rich Low_complexity Low_complexity 1 55 0 4 1113 969 222 10 25 chr12 69319740 69319943 -51937587 + URR1B DNA MER1_type 2 201 -24 4 1113 42 0 0 0 chr12 69319958 69320000 -51937530 + AT_rich Low_complexity Low_complexity 1 42 0 4 1113 243 0 0 0 chr12 69320386 69320413 -51937117 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1113 255 311 0 37 chr12 69320953 69321060 -51936470 + CT-rich Low_complexity Low_complexity 4 106 0 4 1113 321 241 25 25 chr12 69321219 69321300 -51936230 - Lx8 LINE L1 -960 6513 6433 4 1113 903 303 117 17 chr12 69321311 69321791 -51935739 - Lx8 LINE L1 -239 5641 5114 4 1113 901 307 53 15 chr12 69321851 69322192 -51935338 + ORR1E LTR MaLR 4 357 -2 4 1113 2655 119 63 42 chr12 69322300 69322779 -51934751 - RMER16 LTR ERVK 0 533 1 4 1113 408 20 0 0 chr12 69323754 69323803 -51933727 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1113 1025 291 24 21 chr12 69323949 69324325 -51933205 + MTEb LTR MaLR 1 377 -2 4 1113 774 258 9 54 chr12 69324727 69324948 -51932582 + B3 SINE B2 6 216 0 4 1113 297 191 0 31 chr12 69325107 69325172 -51932358 + L5 LINE RTE 2202 2264 -1 4 1113 513 47 0 0 chr12 69326576 69326640 -51930890 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1113 414 57 0 0 chr12 69326640 69326692 -51930838 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1113 234 125 40 40 chr12 69326844 69326894 -51930636 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 4 1113 8085 119 16 3 chr12 69328275 69329503 -51928027 - Lx2 LINE L1 0 6997 5754 4 1113 206 290 16 0 chr12 69330595 69330657 -51926873 + (CAG)n Simple_repeat Simple_repeat 3 65 0 4 1113 413 307 16 63 chr12 69332162 69332353 -51925177 - B3A SINE B2 -16 182 1 4 1113 290 301 43 50 chr12 69333828 69333946 -51923584 - MLT1D LTR MaLR -54 451 335 4 1113 495 0 0 0 chr12 69333946 69334001 -51923529 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1113 290 301 43 50 chr12 69334001 69334022 -51923508 - MLT1D LTR MaLR -171 334 313 4 1113 1743 48 18 4 chr12 69334029 69334257 -51923273 + L1_Mus1 LINE L1 6335 6565 -2 4 1113 3711 131 40 13 chr12 69334269 69334874 -51922656 - Lx3C LINE L1 -7 6969 6349 4 1113 38 51 0 0 chr12 69335981 69336040 -51921490 + AT_rich Low_complexity Low_complexity 1 59 0 4 1114 444 19 0 0 chr12 69338370 69338423 -51919107 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1114 339 317 58 0 chr12 69338492 69338612 -51918918 + Lx6 LINE L1 6932 7058 -402 4 1114 22 80 0 0 chr12 69338690 69338740 -51918790 + AT_rich Low_complexity Low_complexity 1 50 0 4 1114 2147 88 0 0 chr12 69339096 69339381 -51918149 - L1_Mm LINE L1 -160 5723 5439 4 1114 26 0 0 0 chr12 69340043 69340069 -51917461 + AT_rich Low_complexity Low_complexity 1 26 0 4 1114 389 234 20 206 chr12 69340124 69340323 -51917207 + RMER15 LTR ERVL 1 162 -413 4 1114 746 247 17 11 chr12 69340328 69340504 -51917026 + RMER15 LTR ERVL 287 463 -112 4 1114 2921 84 9 7 chr12 69342524 69342944 -51914586 - BGLII LTR ERVK 0 421 1 4 1114 432 361 25 25 chr12 69343218 69343417 -51914113 + B4A SINE B4 6 204 -88 4 1114 260 263 23 130 chr12 69345042 69345069 -51912461 + MT2B LTR ERVL 145 157 -444 4 1114 385 313 52 7 chr12 69345069 69345204 -51912326 + B1F1 SINE Alu 1 141 -8 4 1114 249 342 0 0 chr12 69345221 69345294 -51912236 + ID4_ SINE ID 5 77 -6 4 1114 666 68 0 0 chr12 69345303 69345391 -51912139 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1114 238 200 0 0 chr12 69345592 69345647 -51911883 + A-rich Low_complexity Low_complexity 1 55 0 4 1114 7795 21 4 4 chr12 69347847 69348763 -51908767 + L1Md_F3 LINE L1 5669 6584 0 4 1114 238 322 102 0 chr12 69349277 69349395 -51908135 - MIRb SINE MIR -91 177 48 4 1114 242 254 15 15 chr12 69350818 69350886 -51906644 + A-rich Low_complexity Low_complexity 3 70 0 4 1114 596 261 50 60 chr12 69352037 69352338 -51905192 - L1MC1 LINE L1 -990 5156 4859 4 1114 1178 281 106 32 chr12 69352345 69353448 -51904082 + L1MC1 LINE L1 5156 6327 -6 4 1114 641 310 73 66 chr12 69353496 69353757 -51903773 + B4 SINE B4 5 269 -23 5 1114 534 16 0 0 chr12 69353757 69353820 -51903710 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1114 641 310 73 66 chr12 69353820 69353831 -51903699 + B4 SINE B4 270 279 -13 5 1114 2460 68 9 34 chr12 69354017 69354366 -51903164 + L1_Mus3 LINE L1 6298 6637 -1 5 1114 22 0 0 0 chr12 69354366 69354388 -51903142 + AT_rich Low_complexity Low_complexity 1 22 0 5 1114 21 0 0 0 chr12 69354505 69354526 -51903004 + AT_rich Low_complexity Low_complexity 1 21 0 5 1114 248 298 144 12 chr12 69356125 69356445 -51901085 - L1MEg LINE L1 -3045 3101 2740 5 1114 306 305 46 15 chr12 69356535 69356665 -51900865 - L1MEg LINE L1 -3447 2699 2566 5 1114 2452 133 10 27 chr12 69357489 69357900 -51899630 - Lx2 LINE L1 -2 6995 6592 5 1114 405 297 43 32 chr12 69358251 69358439 -51899091 + HERV16-int LTR ERVL 964 1153 -3843 5 1114 250 337 76 42 chr12 69359144 69359407 -51898123 - L1MEg LINE L1 -5533 709 438 5 1114 1622 42 0 0 chr12 69359465 69359657 -51897873 + L1Md_F2 LINE L1 5395 5586 -297 5 1114 7717 49 20 2 chr12 69359657 69360623 -51896907 + L1Md_F2 LINE L1 5587 6569 -13 5 1114 266 0 29 0 chr12 69360640 69360674 -51896856 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1114 748 300 4 20 chr12 69360679 69360924 -51896606 - Lx9 LINE L1 -300 7344 7104 5 1114 37 39 0 0 chr12 69361192 69361243 -51896287 + AT_rich Low_complexity Low_complexity 1 51 0 5 1114 225 94 0 0 chr12 69361460 69361492 -51896038 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1114 798 229 51 28 chr12 69361595 69361811 -51895719 - URR1A DNA MER1_type -4 222 2 5 1114 3261 99 36 14 chr12 69362026 69362529 -51895001 + Lx2 LINE L1 6484 6997 0 5 1114 435 159 0 0 chr12 69362599 69362712 -51894818 + T-rich Low_complexity Low_complexity 1 113 0 5 1114 1147 62 7 0 chr12 69362712 69362858 -51894672 - B1_Mm SINE Alu 0 147 1 5 1114 194 57 57 0 chr12 69365317 69365352 -51892178 + (TTAA)n Simple_repeat Simple_repeat 3 39 0 5 1114 648 302 0 25 chr12 69365378 69365575 -51891955 - B3A SINE B2 -6 192 1 5 1114 459 0 0 0 chr12 69365874 69365925 -51891605 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1114 2597 81 18 5 chr12 69365925 69366309 -51891221 - Lx3A LINE L1 -13 6968 6580 5 1114 676 313 11 0 chr12 69366349 69366528 -51891002 - Lx7 LINE L1 -991 6653 6473 5 1114 620 275 53 29 chr12 69367106 69367312 -51890218 + Lx8 LINE L1 6974 7184 -289 5 1114 20016 201 44 10 chr12 69367674 69368129 -51889401 + Lx5 LINE L1 876 1402 -4475 5 1114 7696 42 2 3 chr12 69368129 69369059 -51888471 + RLTR13B3 LTR ERVK 1 929 0 5 1114 20016 162 68 21 chr12 69369059 69369704 -51887826 + Lx5 LINE L1 1403 2057 -3820 5 1114 459 0 0 0 chr12 69369704 69369755 -51887775 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1114 20016 162 68 21 chr12 69369755 69371810 -51885720 + Lx5 LINE L1 2058 4285 -1592 5 1114 209 33 0 32 chr12 69371810 69371841 -51885689 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 5 1114 20016 162 68 21 chr12 69371841 69373111 -51884419 + Lx5 LINE L1 4286 5573 -304 5 1114 1145 125 5 11 chr12 69373104 69373290 -51884240 + Lx5 LINE L1 5728 5912 -1138 5 1114 1937 131 18 60 chr12 69373301 69373634 -51883896 + ORR1A2 LTR MaLR 1 319 -8 5 1114 1621 245 22 27 chr12 69373638 69374045 -51883485 + Lx5 LINE L1 5902 6306 -744 5 1114 1031 255 89 51 chr12 69374064 69374378 -51883152 - MTD LTR MaLR -92 327 2 5 1114 1929 283 51 16 chr12 69374409 69374977 -51882553 - Lx8 LINE L1 -690 6783 6196 5 1114 381 116 0 0 chr12 69375012 69375081 -51882449 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 5 1114 333 0 0 0 chr12 69375082 69375119 -51882411 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1114 235 204 41 0 chr12 69375181 69375230 -51882300 - Lx9 LINE L1 -993 6651 6601 5 1114 311 0 0 25 chr12 69375259 69375299 -51882231 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 5 1114 2604 238 40 30 chr12 69375530 69376321 -51881209 - Lx7 LINE L1 -641 5943 5109 5 1114 1659 182 13 3 chr12 69376629 69376932 -51880598 + ORR1A4 LTR MaLR 1 306 -23 5 1114 25 0 0 0 chr12 69377378 69377403 -51880127 + AT_rich Low_complexity Low_complexity 1 25 0 5 1114 280 171 14 54 chr12 69377403 69377414 -51880116 - Lx5 LINE L1 0 7050 7043 5 1114 1958 115 10 10 chr12 69377414 69377721 -51879809 - Lx3A LINE L1 -6 6975 6669 5 1114 280 171 14 54 chr12 69377721 69377783 -51879747 - Lx5 LINE L1 -8 7042 6980 5 1114 3145 31 0 56 chr12 69378325 69378790 -51878740 - L1Md_F3 LINE L1 0 6584 6180 5 1114 440 292 196 6 chr12 69379154 69379333 -51878197 - B3 SINE B2 0 216 4 5 1114 22 56 0 0 chr12 69379453 69379489 -51878041 + AT_rich Low_complexity Low_complexity 1 36 0 5 1114 381 240 60 0 chr12 69379576 69379676 -51877854 - B3 SINE B2 -11 205 100 5 1114 21 0 0 0 chr12 69379828 69379849 -51877681 + AT_rich Low_complexity Low_complexity 1 21 0 5 1114 375 135 13 13 chr12 69380392 69380467 -51877063 - MusHAL1 LINE L1 -2277 435 361 5 1114 5026 87 7 4 chr12 69380467 69381157 -51876373 + L1_Mus2 LINE L1 5875 6566 0 5 1114 228 263 18 0 chr12 69382703 69382760 -51874770 + ID4 SINE ID 2 59 -24 5 1114 432 0 0 0 chr12 69382858 69382906 -51874624 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1114 270 0 0 0 chr12 69382906 69382935 -51874595 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1114 297 109 0 0 chr12 69383493 69383539 -51873991 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1114 381 347 134 7 chr12 69383563 69383853 -51873677 + L1MC4a LINE L1 5622 5948 -1934 5 1114 24 0 0 0 chr12 69383983 69384007 -51873523 + AT_rich Low_complexity Low_complexity 1 24 0 5 1114 622 312 53 91 chr12 69384209 69384385 -51873145 + MTEa LTR MaLR 1 167 -212 5 1114 414 0 0 0 chr12 69384385 69384431 -51873099 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1114 765 106 0 0 chr12 69384432 69384545 -51872985 + (GGGA)n Simple_repeat Simple_repeat 4 116 0 5 1114 622 312 53 91 chr12 69384545 69384708 -51872822 + MTEa LTR MaLR 168 329 -50 5 1114 1006 285 4 24 chr12 69384716 69384971 -51872559 - B4A SINE B4 0 292 43 5 1114 2423 62 3 15 chr12 69386299 69386624 -51870906 - Lx LINE L1 -747 5907 5587 5 1114 3777 91 9 15 chr12 69386653 69387198 -51870332 + L1_Mus4 LINE L1 5907 6448 -188 5 1114 901 28 18 0 chr12 69387186 69387295 -51870235 - L1_Mus1 LINE L1 -848 5719 5609 5 1114 1781 65 0 17 chr12 69387285 69387519 -51870011 + L1_Mus1 LINE L1 6338 6567 0 5 1114 224 154 19 37 chr12 69387524 69387578 -51869952 + A-rich Low_complexity Low_complexity 2 54 0 5 1114 2549 93 58 8 chr12 69388090 69388469 -51869061 - MTB LTR MaLR -2 398 1 5 1114 3381 176 99 6 chr12 69391274 69391933 -51865597 - Lx5 LINE L1 0 7050 6331 5 1114 465 34 0 0 chr12 69392388 69392447 -51865083 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 5 1114 481 279 28 35 chr12 69392846 69392987 -51864543 + MTE2b LTR MaLR 1 140 -239 5 1114 387 0 0 0 chr12 69392995 69393038 -51864492 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1114 6850 102 40 6 chr12 69393145 69394172 -51863358 + Lx3_Mus LINE L1 5925 6991 -18 5 1114 324 0 0 0 chr12 69394172 69394208 -51863322 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 5 1114 6850 102 40 6 chr12 69394208 69394224 -51863306 + Lx3_Mus LINE L1 6992 7004 -5 5 1114 305 289 82 0 chr12 69394366 69394463 -51863067 + MTE2b LTR MaLR 275 379 0 5 1114 489 282 17 0 chr12 69394649 69394766 -51862764 + RSINE1 SINE B4 9 127 -38 5 1114 273 340 41 104 chr12 69394652 69394872 -51862658 + B3 SINE B2 11 216 0 5 1114 26 0 0 0 chr12 69395158 69395184 -51862346 + AT_rich Low_complexity Low_complexity 1 26 0 5 1114 312 297 158 41 chr12 69395963 69396184 -51861346 + L1ME3 LINE L1 4783 5029 -1117 5 1114 3473 159 94 18 chr12 69396186 69397313 -51860217 + L1_Mur3 LINE L1 519 1727 -4153 5 1114 358 317 85 80 chr12 69397815 69398264 -51859266 + L1ME3 LINE L1 5662 6112 -50 5 1114 21 0 0 0 chr12 69398773 69398794 -51858736 + AT_rich Low_complexity Low_complexity 1 21 0 5 1114 400 287 14 110 chr12 69399815 69400034 -51857496 - B3A SINE B2 0 198 1 5 1114 290 341 93 29 chr12 69400583 69400755 -51856775 + MER5A DNA MER1_type 7 189 0 5 1114 650 282 87 35 chr12 69402883 69403137 -51854393 + RLTR12B LTR ERVK 54 320 -208 5 1114 3902 203 95 18 chr12 69403207 69404026 -51853504 + Lx5 LINE L1 6166 7047 -3 5 1114 22 35 0 0 chr12 69404032 69404061 -51853469 + AT_rich Low_complexity Low_complexity 1 29 0 5 1114 1985 37 0 0 chr12 69405474 69405719 -51851811 - IAPEY2_LTR LTR ERVK 0 357 113 5 1114 8165 22 0 0 chr12 69405719 69406656 -51850874 - L1Md_A LINE L1 -1 6581 5645 5 1114 1003 51 19 1 chr12 69406656 69406793 -51850737 - IAPEY2_LTR LTR ERVK -193 127 1 5 1114 243 0 0 0 chr12 69407500 69407527 -51850003 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1114 272 244 0 11 chr12 69407907 69407998 -51849532 + GA-rich Low_complexity Low_complexity 3 92 0 5 1114 318 132 0 0 chr12 69407995 69408048 -51849482 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 5 1114 209 57 0 28 chr12 69409044 69409080 -51848450 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1114 24 0 0 0 chr12 69410272 69410296 -51847234 + AT_rich Low_complexity Low_complexity 1 24 0 5 1114 2387 113 15 23 chr12 69410321 69410712 -51846818 - L1_Mus3 LINE L1 -2 6636 6249 5 1114 1031 204 18 32 chr12 69411937 69412155 -51845375 + B3 SINE B2 1 215 -1 5 1114 463 305 35 14 chr12 69413391 69413534 -51843996 + RSINE1 SINE B4 2 147 -18 5 1114 895 258 9 5 chr12 69413768 69413982 -51843548 + B3 SINE B2 1 215 -1 5 1114 468 278 247 15 chr12 69414027 69414359 -51843171 + L1MEg LINE L1 1152 1560 -4682 5 1114 632 299 116 16 chr12 69414360 69414681 -51842849 - MTEa LTR MaLR -1 378 6 5 1114 387 60 0 0 chr12 69415043 69415093 -51842437 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1114 327 363 103 43 chr12 69415415 69415853 -51841677 + L1MEg LINE L1 2136 2599 -3547 5 1114 303 330 19 0 chr12 69415935 69416041 -51841489 + L1MEg LINE L1 2715 2822 -3324 5 1114 240 274 63 32 chr12 69416207 69416365 -51841165 + L1MEg LINE L1 3262 3424 -2722 5 1114 417 246 54 18 chr12 69416449 69416561 -51840969 - Lx6 LINE L1 -599 6861 6746 5 1114 717 282 153 11 chr12 69416564 69416851 -51840679 + Lx6 LINE L1 7036 7363 -97 5 1114 849 273 82 19 chr12 69416849 69417190 -51840340 - L1_Mur3 LINE L1 -1826 4021 3691 5 1114 418 337 76 11 chr12 69417162 69417531 -51839999 - L1_Mur3 LINE L1 -3993 1887 1495 5 1114 279 232 84 0 chr12 69418566 69418661 -51838869 - Lx9 LINE L1 -11 7633 7531 5 1114 318 237 10 10 chr12 69418872 69418970 -51838560 + L1MEg LINE L1 5101 5198 -948 5 1114 21 0 0 0 chr12 69419164 69419185 -51838345 + AT_rich Low_complexity Low_complexity 1 21 0 5 1114 266 299 29 7 chr12 69419752 69419890 -51837640 - Lx9 LINE L1 -1 7643 7503 5 1114 1044 58 19 6 chr12 69420120 69420276 -51837254 - L1_Mus3 LINE L1 -5 6633 6476 5 1114 238 236 34 0 chr12 69420459 69420513 -51837017 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1114 261 0 0 0 chr12 69420513 69420542 -51836988 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1114 238 236 34 0 chr12 69420542 69420576 -51836954 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1114 845 144 0 37 chr12 69420726 69420913 -51836617 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 1114 305 95 0 0 chr12 69421509 69421551 -51835979 + Lx3B LINE L1 6770 6811 -162 6 1114 1458 175 3 79 chr12 69421551 69421843 -51835687 + ORR1A3 LTR MaLR 6 275 -51 6 1114 336 264 92 30 chr12 69421926 69422090 -51835440 - L1_Mur1 LINE L1 -788 5098 4925 6 1114 336 102 0 0 chr12 69422450 69422499 -51835031 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1114 1046 75 6 58 chr12 69422499 69422655 -51834875 - B1_Mus1 SINE Alu 0 148 1 6 1114 276 294 62 27 chr12 69423998 69424110 -51833420 + B1F SINE Alu 33 148 -1 6 1114 248 282 115 0 chr12 69424236 69424314 -51833216 + PB1D9 SINE Alu 6 92 -28 6 1114 573 240 16 0 chr12 69424246 69424367 -51833163 + ID_B1 SINE B4 102 224 0 6 1114 554 202 47 174 chr12 69424433 69424732 -51832798 - Lx9 LINE L1 -13 7631 7371 6 1114 518 278 16 33 chr12 69425659 69425841 -51831689 + B3A SINE B2 3 181 -17 6 1114 531 0 0 0 chr12 69425848 69425907 -51831623 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6 1114 321 279 71 14 chr12 69425912 69426037 -51831493 + MIR SINE MIR 43 173 -95 6 1114 941 299 48 48 chr12 69426042 69426421 -51831109 - MTEb LTR MaLR 0 379 1 6 1114 33 0 0 0 chr12 69426439 69426472 -51831058 + AT_rich Low_complexity Low_complexity 1 33 0 6 1114 341 294 10 10 chr12 69426503 69426606 -51830924 - RSINE1 SINE B4 -59 106 4 6 1114 423 330 22 99 chr12 69426744 69426976 -51830554 + MTEa LTR MaLR 3 216 -163 6 1114 200 86 29 0 chr12 69426981 69427016 -51830514 + (TTCTC)n Simple_repeat Simple_repeat 3 38 0 6 1114 23 0 0 0 chr12 69427104 69427127 -51830403 + AT_rich Low_complexity Low_complexity 1 23 0 6 1114 2066 295 182 36 chr12 69427542 69428168 -51829362 + Lx8 LINE L1 6121 6808 -665 6 1114 207 0 0 0 chr12 69428168 69428191 -51829339 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1114 2066 295 182 36 chr12 69428191 69428740 -51828790 + Lx8 LINE L1 6809 7468 -5 6 1114 453 211 5 33 chr12 69428801 69428922 -51828608 - RMER1C Other Other -19 1323 1223 6 1114 776 203 46 78 chr12 69428921 69429140 -51828390 - RMER1C Other Other -1119 223 12 6 1114 206 353 58 19 chr12 69429840 69429944 -51827586 + MIR SINE MIR 14 121 -141 6 1114 354 289 0 28 chr12 69430823 69430930 -51826600 + CT-rich Low_complexity Low_complexity 4 107 0 6 1114 32 86 0 0 chr12 69431026 69431107 -51826423 + AT_rich Low_complexity Low_complexity 1 81 0 6 1114 837 71 0 0 chr12 69431205 69431331 -51826199 + (GA)n Simple_repeat Simple_repeat 1 126 0 6 1114 3791 248 103 29 chr12 69431550 69432541 -51824989 - Lx7 LINE L1 -583 7113 6050 6 1114 182 306 39 133 chr12 69433732 69433860 -51823670 - MIRc SINE MIR -71 197 82 6 1114 277 241 23 36 chr12 69433869 69433947 -51823583 + PB1D10 SINE Alu 21 98 -51 6 1114 28 48 0 0 chr12 69435519 69435561 -51821969 + AT_rich Low_complexity Low_complexity 1 42 0 6 1114 25 0 0 0 chr12 69435581 69435606 -51821924 + AT_rich Low_complexity Low_complexity 1 25 0 6 1114 1309 288 44 82 chr12 69436127 69436782 -51820748 + Lx8 LINE L1 6196 6825 -648 6 1114 6992 76 11 1 chr12 69436814 69437744 -51819786 - L1_Mus1 LINE L1 -1 6566 5628 6 1114 452 179 0 0 chr12 69437738 69437816 -51819714 + L1_Mm LINE L1 5572 5649 -234 6 1114 1478 199 27 162 chr12 69438486 69438600 -51818930 + ORR1B1 LTR MaLR 11 100 -294 6 1114 1155 54 0 26 chr12 69438600 69438751 -51818779 - B1_Mus1 SINE Alu 0 148 2 6 1114 1478 199 27 162 chr12 69438751 69439080 -51818450 + ORR1B1 LTR MaLR 101 394 0 6 1114 478 176 106 32 chr12 69439351 69439474 -51818056 - RMER1B Other Other -16 1050 919 6 1114 2449 240 134 32 chr12 69439602 69440329 -51817201 - RMER1B Other Other -171 895 87 6 1114 24 32 0 0 chr12 69440385 69440416 -51817114 + AT_rich Low_complexity Low_complexity 1 31 0 6 1114 1383 197 179 102 chr12 69440425 69440469 -51817061 - MT2A LTR ERVL -3 530 474 6 1114 333 0 0 0 chr12 69440469 69440506 -51817024 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1114 1383 197 179 102 chr12 69440506 69440952 -51816578 - MT2A LTR ERVL -60 473 3 6 1114 1072 203 13 9 chr12 69441372 69441596 -51815934 + URR1B DNA MER1_type 1 225 0 6 1114 870 269 9 46 chr12 69442043 69442261 -51815269 + B3 SINE B2 6 215 -1 6 1114 291 54 0 0 chr12 69442375 69442412 -51815118 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1114 2588 276 104 21 chr12 69442799 69443812 -51813718 - Lx7 LINE L1 -2 7694 6550 6 1114 21 0 0 0 chr12 69443984 69444005 -51813525 + AT_rich Low_complexity Low_complexity 1 21 0 6 1114 1077 274 13 37 chr12 69444149 69444448 -51813082 - RLTR18B LTR ERVK -35 477 186 6 1114 1030 231 36 0 chr12 69444449 69444674 -51812856 - RLTR18B LTR ERVK -274 238 6 6 1114 582 385 90 22 chr12 69444937 69445579 -51811951 + L2 LINE L2 2133 2818 -601 6 1114 5589 125 24 1 chr12 69445929 69446800 -51810730 + Lx3B LINE L1 6080 6970 -3 6 1114 207 0 0 0 chr12 69448836 69448859 -51808671 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1114 195 114 0 0 chr12 69448860 69448895 -51808635 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1114 389 354 18 63 chr12 69448896 69449119 -51808411 - B4A SINE B4 -78 214 2 6 1114 569 337 55 50 chr12 69449166 69449509 -51808021 + MLT1A0 LTR MaLR 21 365 0 6 1114 38 22 0 0 chr12 69449598 69449643 -51807887 + AT_rich Low_complexity Low_complexity 1 45 0 6 1114 207 0 0 0 chr12 69450172 69450195 -51807335 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1114 548 429 76 3 chr12 69450212 69450500 -51807030 + MER115 DNA Tip100 131 439 -254 6 1114 492 188 10 9 chr12 69450600 69450704 -51806826 - ORR1C2 LTR MaLR 0 384 272 6 1114 455 0 18 0 chr12 69450981 69451036 -51806494 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1114 1155 75 0 0 chr12 69451119 69451266 -51806264 + B1_Mus2 SINE Alu 1 147 0 6 1114 21 36 0 0 chr12 69451544 69451572 -51805958 + AT_rich Low_complexity Low_complexity 1 28 0 6 1114 536 254 123 28 chr12 69451574 69451975 -51805555 + L1M5 LINE L1 4252 4678 -1468 6 1114 835 210 4 8 chr12 69452060 69452314 -51805216 + GA-rich Low_complexity Low_complexity 1 253 0 6 1114 828 103 20 7 chr12 69452336 69452483 -51805047 + (GGAA)n Simple_repeat Simple_repeat 2 150 0 6 1114 228 294 49 99 chr12 69452759 69453083 -51804447 + L1M5 LINE L1 4894 5201 -945 6 1114 180 278 52 69 chr12 69454964 69455080 -51802450 + L3 LINE CR1 2738 2851 -1638 6 1114 930 71 0 0 chr12 69455124 69455265 -51802265 + L1Md_F2 LINE L1 6442 6582 0 6 1114 1438 264 42 6 chr12 69456334 69456689 -51800841 - MTE2a LTR MaLR -9 370 3 6 1114 24 53 0 0 chr12 69457179 69457217 -51800313 + AT_rich Low_complexity Low_complexity 1 38 0 6 1114 430 304 47 21 chr12 69458323 69458507 -51799023 - MLT1E3 LTR MaLR -36 588 390 6 1114 437 341 74 84 chr12 69458538 69458861 -51798669 - MLT1E3 LTR MaLR -301 323 4 6 1114 1160 264 51 112 chr12 69459107 69459516 -51798014 + RMER20B LTR ERVK 222 605 -22 6 1114 372 71 0 0 chr12 69459967 69460023 -51797507 + (A)n Simple_repeat Simple_repeat 1 56 0 6 1114 1370 244 24 80 chr12 69461566 69461940 -51795590 - ORR1E LTR MaLR -6 353 1 6 1114 1423 217 142 8 chr12 69462230 69462597 -51794933 - MTD LTR MaLR 0 419 4 6 1114 713 161 51 6 chr12 69462600 69462756 -51794774 - MTD-int LTR MaLR 0 1258 1096 6 1114 7295 71 26 0 chr12 69462761 69463717 -51793813 + L1_Mus1 LINE L1 5587 6567 0 6 1114 770 181 6 19 chr12 69463845 69464003 -51793527 - URR1A DNA MER1_type 0 226 71 6 1114 464 287 0 34 chr12 69463992 69464111 -51793419 - MTD-int LTR MaLR -842 416 302 6 1114 1063 208 83 57 chr12 69464124 69464494 -51793036 + RLTR20C LTR ERVK 1 448 -93 6 1114 525 16 0 0 chr12 69464494 69464556 -51792974 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1114 603 295 30 18 chr12 69464556 69464646 -51792884 + RLTR20C LTR ERVK 449 541 0 6 1114 976 171 33 86 chr12 69464656 69464872 -51792658 - MTD-int LTR MaLR -1028 230 22 6 1114 2454 125 70 51 chr12 69464872 69465345 -51792185 - RLTR45 LTR ERVK 0 482 1 6 1114 976 171 33 86 chr12 69465345 69465371 -51792159 - MTD-int LTR MaLR -1237 21 2 6 1114 410 157 0 14 chr12 69465371 69465442 -51792088 - MTD LTR MaLR 0 374 305 6 1114 1487 272 0 0 chr12 69465574 69465897 -51791633 - MTD LTR MaLR -96 323 1 6 1114 312 309 184 80 chr12 69465897 69466142 -51791388 + B4A SINE B4 21 291 -1 6 1114 405 141 0 0 chr12 69467785 69467856 -51789674 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 139 369 304 76 62 chr12 69467880 69468168 -51789362 - B4A SINE B4 0 292 1 6 1115 23 0 0 0 chr12 69468270 69468293 -51789237 + AT_rich Low_complexity Low_complexity 1 23 0 6 1115 26 0 0 0 chr12 69468387 69468413 -51789117 + AT_rich Low_complexity Low_complexity 1 26 0 6 1115 1065 99 12 6 chr12 69468416 69468588 -51788942 - Lx3_Mus LINE L1 -21 6988 6816 6 1115 457 223 121 21 chr12 69468679 69468839 -51788691 - MTD LTR MaLR 0 419 191 6 1115 270 0 0 0 chr12 69468839 69468869 -51788661 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1115 198 0 0 0 chr12 69468872 69468894 -51788636 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1115 772 261 10 29 chr12 69468894 69469072 -51788458 - MTD LTR MaLR -217 190 13 6 1115 300 209 91 101 chr12 69469064 69469140 -51788390 - RMER17A2 LTR ERVK -525 381 305 6 1115 879 83 0 0 chr12 69469140 69469261 -51788269 + (GAA)n Simple_repeat Simple_repeat 3 123 0 6 1115 300 209 91 101 chr12 69469261 69469392 -51788138 - RMER17A2 LTR ERVK -602 304 176 6 1115 4826 66 37 2 chr12 69469421 69470062 -51787468 - L1_Mus2 LINE L1 0 6566 5903 6 1115 826 67 117 0 chr12 69470062 69470182 -51787348 + L1_Mus2 LINE L1 5773 5906 -730 6 1115 599 310 32 0 chr12 69470242 69470526 -51787004 - L1MC4a LINE L1 -469 7413 7121 6 1115 579 53 0 0 chr12 69471224 69471299 -51786231 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 6 1115 2271 297 113 21 chr12 69473598 69474490 -51783040 + Lx8 LINE L1 6384 7357 -116 6 1115 27 0 0 0 chr12 69474587 69474614 -51782916 + AT_rich Low_complexity Low_complexity 1 27 0 6 1115 323 379 68 16 chr12 69474694 69474946 -51782584 + B4 SINE B4 27 291 -1 6 1115 935 296 124 16 chr12 69475010 69475300 -51782230 + L1M2 LINE L1 3352 3682 -2461 6 1115 429 92 0 26 chr12 69475300 69475378 -51782152 + L1Md_F2 LINE L1 6507 6582 0 6 1115 935 296 124 16 chr12 69475378 69475708 -51781822 + L1M2 LINE L1 3683 4039 -2104 6 1115 511 228 26 17 chr12 69475737 69475853 -51781677 - Lx9 LINE L1 -881 6763 6647 6 1115 767 205 17 149 chr12 69475846 69476087 -51781443 + Lx9 LINE L1 7162 7370 -274 7 1115 31571 78 24 14 chr12 69476253 69481348 -51776182 + L1MA4 LINE L1 441 5616 -684 7 1115 7975 45 11 1 chr12 69481348 69482335 -51775195 + L1Md_F3 LINE L1 5588 6584 0 7 1115 1625 256 35 44 chr12 69482335 69482582 -51774948 + L1MA4 LINE L1 5617 5856 -444 7 1115 749 60 17 0 chr12 69482584 69482700 -51774830 + L1Md_F3 LINE L1 6466 6583 -1 7 1115 834 285 65 46 chr12 69482717 69483221 -51774309 + L1MA6 LINE L1 5617 6130 -170 7 1115 321 374 51 17 chr12 69483219 69483317 -51774213 - Lx9 LINE L1 -37 7436 7337 7 1115 426 20 0 0 chr12 69483317 69483368 -51774162 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1115 413 318 9 1 chr12 69483368 69483503 -51774027 - Lx9 LINE L1 -187 7457 7196 7 1115 394 346 22 37 chr12 69483643 69483778 -51773752 + B1F SINE Alu 15 147 -2 7 1115 638 225 196 38 chr12 69485674 69486020 -51771510 + Lx9 LINE L1 7242 7642 -2 7 1115 327 261 0 0 chr12 69487353 69487422 -51770108 - ID4_ SINE ID -12 71 3 7 1115 219 329 243 7 chr12 69488181 69488325 -51769205 - MIRb SINE MIR -65 203 26 7 1115 437 249 97 85 chr12 69488569 69488591 -51768939 + B3A SINE B2 7 26 -172 7 1115 2253 168 3 5 chr12 69488591 69488974 -51768556 + RLTR14 LTR ERV1 1 382 0 7 1115 437 249 97 85 chr12 69488974 69489127 -51768403 + B3A SINE B2 27 184 -14 7 1115 381 312 7 40 chr12 69489224 69489374 -51768156 + RSINE1 SINE B4 2 146 -19 7 1115 1038 123 9 9 chr12 69489590 69489919 -51767611 + (CA)n Simple_repeat Simple_repeat 1 329 0 7 1115 308 305 56 38 chr12 69490130 69490290 -51767240 + L1MB2 LINE L1 6002 6164 -7 7 1115 261 339 102 5 chr12 69490578 69490765 -51766765 - MLT1C LTR MaLR -12 455 251 7 1115 324 242 0 0 chr12 69490804 69490899 -51766631 + CT-rich Low_complexity Low_complexity 1 95 0 7 1115 406 303 71 56 chr12 69490981 69491177 -51766353 - MLT1C LTR MaLR -267 200 2 7 1115 1642 202 28 54 chr12 69491573 69491960 -51765570 + ORR1C1 LTR MaLR 2 378 0 7 1115 22 0 0 0 chr12 69492659 69492681 -51764849 + AT_rich Low_complexity Low_complexity 1 22 0 7 1115 410 318 75 4 chr12 69492788 69493041 -51764489 - L1ME2 LINE L1 -208 5956 5686 7 1115 855 318 112 17 chr12 69493125 69493747 -51763783 - L1ME2 LINE L1 -2979 3167 2484 7 1115 1626 214 116 16 chr12 69493786 69493867 -51763663 - RLTR20B1 LTR ERVK -7 556 471 7 1115 486 0 0 0 chr12 69493867 69493921 -51763609 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1115 1626 214 116 16 chr12 69493921 69494271 -51763259 - RLTR20B1 LTR ERVK -93 470 82 7 1115 6260 251 75 47 chr12 69494361 69494667 -51762863 - Lx7 LINE L1 0 7696 7396 7 1115 1132 93 6 6 chr12 69494667 69494840 -51762690 + (GAA)n Simple_repeat Simple_repeat 2 174 0 7 1115 6260 251 75 47 chr12 69494840 69494887 -51762643 - Lx7 LINE L1 -301 7395 7358 7 1115 195 42 0 0 chr12 69494887 69494911 -51762619 + (GA)n Simple_repeat Simple_repeat 1 24 0 7 1115 6260 236 72 38 chr12 69494911 69496904 -51760626 - Lx7 LINE L1 -339 7357 5284 7 1115 786 274 140 4 chr12 69496920 69497191 -51760339 - Lx2B LINE L1 -5 6995 6688 7 1115 596 196 77 26 chr12 69497231 69497425 -51760105 - Lx7 LINE L1 -588 5292 5089 7 1115 260 336 23 55 chr12 69497980 69498200 -51759330 + L1M5 LINE L1 5599 5811 -313 7 1115 282 267 34 144 chr12 69498242 69498360 -51759170 + MT2B LTR ERVL 153 257 -344 7 1115 542 292 42 49 chr12 69498255 69498399 -51759131 + B1_Mur1 SINE Alu 2 144 -5 7 1115 22 70 0 0 chr12 69498581 69498624 -51758906 + AT_rich Low_complexity Low_complexity 1 43 0 7 1115 355 302 30 48 chr12 69499043 69499210 -51758320 - RNLTR23 LTR ERVK 0 642 479 7 1115 318 318 18 45 chr12 69499888 69500000 -51757530 + MER31B LTR ERV1 6 114 -352 7 1115 390 42 0 0 chr12 69500012 69500060 -51757470 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1115 8109 60 7 0 chr12 69500192 69501269 -51756261 + L1Md_F2 LINE L1 4503 5586 -297 2 1115 8129 48 0 4 chr12 69501269 69502268 -51755262 + L1Md_F2 LINE L1 5587 6581 -1 2 1115 271 292 75 0 chr12 69502296 69502402 -51755128 + MER31B LTR ERV1 272 385 -81 3 1115 762 318 30 26 chr12 69502626 69502897 -51754633 - LTR40b LTR ERVL -62 400 129 4 1115 384 225 31 6 chr12 69503611 69503772 -51753758 + CT-rich Low_complexity Low_complexity 1 165 0 5 1115 3831 168 17 20 chr12 69505155 69505849 -51751681 - RLTR17 LTR ERVK 0 692 1 6 1115 1360 55 11 11 chr12 69505969 69506152 -51751378 + L1_Mus1 LINE L1 6385 6567 0 7 1115 5726 25 0 5 chr12 69506228 69506896 -51750634 + L1Md_A LINE L1 5918 6582 0 8 1115 21 0 0 0 chr12 69507322 69507343 -51750187 + AT_rich Low_complexity Low_complexity 1 21 0 9 1115 34808 66 1 25 chr12 69507758 69513847 -51743683 + L1Md_T LINE L1 99 5586 -297 1 1115 8042 56 0 0 chr12 69513847 69514843 -51742687 + L1Md_T LINE L1 5587 6582 0 1 1115 414 231 152 15 chr12 69515063 69515195 -51742335 - MLT1C LTR MaLR -9 458 238 1 1115 341 375 44 0 chr12 69515219 69515379 -51742151 - MLT1C LTR MaLR -289 178 12 1 1115 253 231 0 13 chr12 69516523 69516602 -51740928 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1115 1788 204 21 0 chr12 69517242 69517571 -51739959 - MTC LTR MaLR -85 336 1 1 1115 456 263 168 25 chr12 69518820 69518991 -51738539 + B3 SINE B2 17 209 -7 1 1115 270 116 0 0 chr12 69519004 69519047 -51738483 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1115 522 0 0 0 chr12 69519361 69519419 -51738111 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1115 3526 155 32 22 chr12 69519662 69520262 -51737268 + RMER19C LTR ERVK 1 606 -5 1 1115 229 125 0 0 chr12 69520267 69520307 -51737223 + L1MB7 LINE L1 6091 6130 -54 1 1115 334 287 159 44 chr12 69520316 69520498 -51737032 + B3 SINE B2 1 203 -13 1 1115 762 311 27 60 chr12 69520512 69520813 -51736717 + B4A SINE B4 2 292 0 2 1115 402 21 0 0 chr12 69523706 69523753 -51733777 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1115 21 57 0 0 chr12 69523998 69524033 -51733497 + AT_rich Low_complexity Low_complexity 1 35 0 2 1115 330 26 0 0 chr12 69524581 69524620 -51732910 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1115 532 341 103 86 chr12 69524983 69525342 -51732188 + MLT1A1 LTR MaLR 1 408 0 2 1115 459 0 0 0 chr12 69525622 69525673 -51731857 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1115 1679 160 48 156 chr12 69525993 69526475 -51731055 + RLTR23 LTR ERV1 1 430 0 2 1115 237 318 137 66 chr12 69526577 69526789 -51730741 - L2a LINE L2 0 3426 3200 2 1115 1486 234 50 6 chr12 69526985 69527324 -51730206 - ORR1D2 LTR MaLR -13 357 4 2 1115 450 284 23 6 chr12 69527325 69527502 -51730028 + L1MC1 LINE L1 6031 6210 -123 2 1115 243 186 33 17 chr12 69528322 69528382 -51729148 + L1MC1 LINE L1 6255 6315 -18 2 1115 915 240 59 42 chr12 69528553 69528893 -51728637 - RMER17C LTR ERVK -389 420 3 3 1115 355 286 105 64 chr12 69528922 69529220 -51728310 + RMER17C LTR ERVK 3 383 -426 3 1115 31 96 0 0 chr12 69529693 69529787 -51727743 + AT_rich Low_complexity Low_complexity 1 94 0 3 1115 225 259 12 12 chr12 69530428 69530514 -51727016 + L1MA4 LINE L1 6057 6142 -158 3 1115 982 191 116 12 chr12 69530549 69530819 -51726711 + RMER10B LTR ERVL 3 298 -144 3 1115 294 157 48 10 chr12 69530842 69530945 -51726585 + CT-rich Low_complexity Low_complexity 3 109 0 3 1115 873 175 76 41 chr12 69530959 69531156 -51726374 + RMER10B LTR ERVL 195 398 0 3 1115 534 237 85 14 chr12 69531194 69531272 -51726258 - RLTR20A2 LTR ERVK -12 566 481 3 1115 360 0 0 0 chr12 69531272 69531312 -51726218 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1115 534 237 85 14 chr12 69531312 69531374 -51726156 - RLTR20A2 LTR ERVK -98 480 417 3 1115 375 241 33 26 chr12 69531354 69531465 -51726065 - RLTR20A2 LTR ERVK -227 336 206 3 1115 336 24 0 0 chr12 69531547 69531588 -51725942 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1115 811 356 14 24 chr12 69531618 69531909 -51725621 - B4A SINE B4 -2 290 3 4 1115 657 64 0 11 chr12 69532015 69532110 -51725420 + L1_Mus2 LINE L1 6472 6565 -1 4 1115 312 252 65 109 chr12 69532280 69532418 -51725112 - LTR48 LTR ERV1 -653 134 3 4 1115 370 304 326 40 chr12 69532418 69532777 -51724753 - MER67D LTR ERV1 -37 477 16 4 1115 2079 105 22 9 chr12 69533116 69533433 -51724097 - ORR1A4 LTR MaLR -8 321 1 4 1115 52 0 0 0 chr12 69533499 69533551 -51723979 + AT_rich Low_complexity Low_complexity 1 52 0 4 1115 420 323 32 0 chr12 69533995 69534150 -51723380 - MLT1A0 LTR MaLR 0 365 206 4 1115 1038 307 107 13 chr12 69534468 69534917 -51722613 - LTR82A LTR ERVL -374 498 8 4 1115 36200 31 0 1 chr12 69535846 69542289 -51715241 - L1Md_T LINE L1 -1 6584 48 4 1115 24 0 0 0 chr12 69542292 69542316 -51715214 + AT_rich Low_complexity Low_complexity 1 24 0 4 1115 22 0 0 0 chr12 69544459 69544481 -51713049 + AT_rich Low_complexity Low_complexity 1 22 0 5 1115 901 179 124 5 chr12 69544558 69544760 -51712770 - URR1A DNA MER1_type 0 226 1 5 1115 707 83 0 0 chr12 69546212 69546308 -51711222 + B1_Mm SINE Alu 52 147 0 5 1115 31098 65 15 17 chr12 69546367 69550937 -51706593 + L1Md_F LINE L1 313 4927 -956 5 1115 237 167 46 77 chr12 69550937 69551002 -51706528 - RMER20A LTR ERVK -268 248 186 5 1115 31098 65 15 17 chr12 69551002 69551652 -51705878 + L1Md_F LINE L1 4928 5585 -298 5 1115 8120 45 2 6 chr12 69551653 69552650 -51704880 + L1Md_F2 LINE L1 5587 6579 -3 5 1115 356 317 120 45 chr12 69553094 69553494 -51704036 + L1ME1 LINE L1 1018 1447 -4953 5 1115 277 263 43 14 chr12 69554280 69554419 -51703111 + L1ME1 LINE L1 2316 2458 -3942 5 1115 241 170 0 0 chr12 69554637 69554690 -51702840 - Lx8 LINE L1 -2 7471 7419 5 1115 770 251 65 0 chr12 69554772 69554971 -51702559 - Lx8 LINE L1 -217 7256 7045 5 1115 255 302 138 25 chr12 69554969 69555244 -51702286 + L1ME1 LINE L1 3758 4063 -2256 5 1115 514 343 37 32 chr12 69555247 69555423 -51702107 + B3A SINE B2 2 180 -18 5 1115 189 0 0 0 chr12 69555423 69555444 -51702086 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1115 717 273 85 32 chr12 69555641 69556137 -51701393 + L1ME1 LINE L1 4377 4898 -1421 5 1115 1375 278 49 15 chr12 69556518 69556923 -51700607 - MTD LTR MaLR 0 419 1 6 1115 408 315 66 29 chr12 69557357 69557707 -51699823 + L1ME1 LINE L1 5655 6017 -335 5 1115 298 318 45 5 chr12 69557798 69558022 -51699508 + L1M5 LINE L1 4476 4708 -1438 6 1115 296 243 0 9 chr12 69558698 69558810 -51698720 + (CA)n Simple_repeat Simple_repeat 2 112 0 6 1115 541 319 78 9 chr12 69559179 69559397 -51698133 + MLT1C LTR MaLR 40 272 -195 6 1115 603 190 153 0 chr12 69559800 69559937 -51697593 - MTD LTR MaLR -14 405 248 6 1115 889 59 25 0 chr12 69559955 69560074 -51697456 + B1_Mm SINE Alu 26 147 0 6 1115 351 60 0 0 chr12 69560080 69560130 -51697400 + (A)n Simple_repeat Simple_repeat 1 50 0 6 1115 887 258 53 0 chr12 69560141 69560366 -51697164 - MTD LTR MaLR -182 237 1 6 1115 556 301 19 6 chr12 69561301 69561458 -51696072 + B3A SINE B2 2 160 -38 6 1115 495 48 0 0 chr12 69561466 69561528 -51696002 + (CATA)n Simple_repeat Simple_repeat 1 62 0 6 1115 955 152 27 53 chr12 69561749 69561937 -51695593 - URR1A DNA MER1_type 0 226 44 6 1115 1892 238 15 111 chr12 69562209 69562861 -51694669 - RMER19C LTR ERVK 0 611 28 7 1115 593 61 12 0 chr12 69562861 69562943 -51694587 + (GAAAA)n Simple_repeat Simple_repeat 3 85 0 7 1115 1892 238 15 111 chr12 69562943 69562966 -51694564 - RMER19C LTR ERVK -584 27 1 7 1115 1631 214 105 8 chr12 69565476 69565849 -51691681 - MTD LTR MaLR -8 411 3 7 1115 229 327 56 0 chr12 69565902 69566009 -51691521 + MER20B DNA MER1_type 538 650 -133 7 1115 344 165 33 11 chr12 69566348 69566440 -51691090 + (TA)n Simple_repeat Simple_repeat 2 95 0 7 1115 229 323 31 31 chr12 69566448 69566576 -51690954 + RMER12 LTR ERVK 731 858 -464 7 1115 180 158 0 0 chr12 69566703 69566741 -51690789 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1115 604 247 24 11 chr12 69566796 69566940 -51690590 - B1F SINE Alu 0 147 12 7 1115 225 358 84 9 chr12 69566845 69566952 -51690578 - B4 SINE B4 -94 198 84 7 1115 390 278 109 14 chr12 69567441 69567726 -51689804 - L1MC3 LINE L1 -18 7767 7456 7 1115 526 362 90 32 chr12 69567729 69568229 -51689301 + MT2A LTR ERVL 1 529 -4 8 1115 742 267 124 0 chr12 69568302 69568512 -51689018 + MTEa-int LTR MaLR 354 589 -991 8 1115 741 232 34 34 chr12 69568512 69568690 -51688840 - MTE-int LTR MaLR -1218 362 185 8 1115 247 232 107 0 chr12 69568840 69568896 -51688634 + MTEa-int LTR MaLR 792 853 -727 8 1115 714 260 110 12 chr12 69568895 69569140 -51688390 + RMER5 LTR ERV1 257 525 -9 8 1115 1580 291 118 68 chr12 69569131 69570074 -51687456 + MTEa-int LTR MaLR 34 1568 -12 8 1115 493 300 30 100 chr12 69570041 69570241 -51687289 - B3A SINE B2 -4 191 6 8 1115 812 241 52 0 chr12 69570248 69570439 -51687091 - L1MC3 LINE L1 -330 7455 7255 7 1115 496 283 110 25 chr12 69570436 69570973 -51686557 - L1MC3 LINE L1 -2233 5552 4970 7 1115 253 64 0 60 chr12 69571995 69572045 -51685485 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 8 1115 414 0 0 0 chr12 69573032 69573078 -51684452 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1115 487 313 35 76 chr12 69573079 69573276 -51684254 - B4A SINE B4 -23 269 81 8 1115 307 313 12 0 chr12 69573307 69573390 -51684140 - B4A SINE B4 -207 85 2 8 1115 265 176 0 50 chr12 69573719 69573779 -51683751 + 4.5SRNA scRNA scRNA 23 79 -15 8 1115 315 0 0 0 chr12 69574384 69574419 -51683111 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1115 357 304 16 16 chr12 69574642 69574769 -51682761 + L3 LINE CR1 2787 2913 -1576 9 1115 288 250 24 36 chr12 69575549 69575632 -51681898 - L2 LINE L2 -499 2920 2839 9 1115 1598 225 120 3 chr12 69575978 69576353 -51681177 + MTD LTR MaLR 1 419 0 9 1115 250 338 62 61 chr12 69576721 69576919 -51680611 + L2b LINE L2 3019 3215 -160 9 1115 265 200 0 0 chr12 69577290 69577335 -51680195 + L2b LINE L2 3329 3373 -2 9 1115 1372 223 138 11 chr12 69577714 69578085 -51679445 - MTD LTR MaLR -1 418 1 9 1115 3549 241 53 76 chr12 69578085 69579372 -51678158 - MTD-int LTR MaLR 0 1258 2 9 1115 1579 274 45 5 chr12 69579373 69579755 -51677775 - MTD LTR MaLR 0 419 23 9 1115 270 0 0 0 chr12 69579755 69579785 -51677745 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1115 228 143 0 0 chr12 69579982 69580024 -51677506 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1115 251 240 128 20 chr12 69580630 69580732 -51676798 - MIR3 SINE MIR -14 194 82 9 1115 369 278 121 9 chr12 69580744 69580860 -51676670 + B1F SINE Alu 1 129 -20 9 1115 405 0 0 0 chr12 69581321 69581366 -51676164 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1115 269 325 0 32 chr12 69581642 69581766 -51675764 + L1MD2 LINE L1 6143 6262 -97 1 1115 567 158 24 0 chr12 69583715 69583842 -51673688 + (TA)n Simple_repeat Simple_repeat 1 130 0 1 1115 296 276 112 18 chr12 69583842 69584105 -51673425 + L1M3 LINE L1 5140 5431 -752 1 1115 5825 177 80 36 chr12 69584726 69586055 -51671475 + Lx4B LINE L1 885 2238 -3639 1 1115 5455 95 0 1 chr12 69586055 69586806 -51670724 + L1_Mus4 LINE L1 5880 6629 -7 1 1115 5825 176 111 36 chr12 69586806 69587309 -51670221 + Lx4B LINE L1 2239 2745 -3132 1 1115 8159 144 49 3 chr12 69587315 69589335 -51668195 + Lx4B LINE L1 4935 7047 -11 1 1115 4617 184 59 47 chr12 69589358 69590381 -51667149 + Lx5 LINE L1 5086 6103 -947 1 1115 695 33 11 0 chr12 69590381 69590471 -51667059 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 1115 4617 208 94 16 chr12 69590471 69591074 -51666456 + Lx5 LINE L1 6104 6781 -269 1 1115 469 310 85 93 chr12 69591082 69591460 -51666070 - RMER13A LTR ERVK -39 588 186 1 1115 872 265 122 34 chr12 69591475 69592050 -51665480 - L1MA6 LINE L1 -444 5856 5184 1 1115 232 140 0 39 chr12 69593214 69593266 -51664264 + (TTA)n Simple_repeat Simple_repeat 3 52 0 1 1115 1340 156 248 10 chr12 69593473 69593620 -51663910 - ORR1C2 LTR MaLR 0 384 173 1 1115 585 0 0 0 chr12 69593620 69593685 -51663845 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1115 1340 156 248 10 chr12 69593685 69593847 -51663683 - ORR1C2 LTR MaLR -212 172 1 1 1115 249 234 24 83 chr12 69594132 69594216 -51663314 + MER5A1 DNA MER1_type 41 119 -47 1 1115 309 277 21 0 chr12 69596017 69596111 -51661419 - L1MA7 LINE L1 -26 6265 6170 1 1115 2981 254 135 66 chr12 69596801 69598199 -51659331 - Lx9 LINE L1 -14 7630 6136 1 1115 265 24 48 0 chr12 69598344 69598386 -51659144 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1115 1054 95 0 20 chr12 69598389 69598539 -51658991 - B1_Mus1 SINE Alu 0 148 2 1 1115 400 301 123 63 chr12 69598773 69599025 -51658505 - Tigger15a DNA TcMar -346 369 103 1 1116 581 0 14 0 chr12 69599815 69599884 -51657646 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1116 288 77 0 0 chr12 69600340 69600379 -51657151 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1116 236 278 71 20 chr12 69602315 69602414 -51655116 - MLT1E1 LTR MaLR 0 654 551 1 1116 334 362 103 26 chr12 69602611 69603039 -51654491 + LTR16B2 LTR ERVL 2 462 0 1 1116 1301 207 9 97 chr12 69603480 69603843 -51653687 + RMER10B LTR ERVL 81 398 0 1 1116 1090 276 82 10 chr12 69604030 69604704 -51652826 - L1M2 LINE L1 -693 5607 4862 1 1116 1616 109 25 33 chr12 69605439 69605715 -51651815 + L1_Mus3 LINE L1 6347 6620 -18 1 1116 266 245 0 0 chr12 69606214 69606267 -51651263 + LTR33A_ LTR ERVL 370 422 -109 1 1116 274 366 49 11 chr12 69607065 69607266 -51650264 + MIRb SINE MIR 43 243 -19 1 1116 284 176 15 0 chr12 69607286 69607354 -51650176 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1116 614 208 157 59 chr12 69608328 69608532 -51648998 - ID_B1 SINE B4 0 224 1 1 1116 273 306 0 0 chr12 69608592 69608654 -51648876 + MIRc SINE MIR 77 138 -130 1 1116 316 267 44 0 chr12 69608770 69608860 -51648670 + RSINE1 SINE B4 2 95 -70 1 1116 25 31 0 0 chr12 69609298 69609330 -51648200 + AT_rich Low_complexity Low_complexity 1 32 0 1 1116 933 46 0 0 chr12 69609451 69609560 -51647970 - L1Md_F2 LINE L1 -444 6138 6030 1 1116 2396 59 0 0 chr12 69609560 69609866 -51647664 + L1Md_F2 LINE L1 6275 6580 -2 1 1116 1209 80 0 39 chr12 69610191 69610372 -51647158 - L1_Mus1 LINE L1 0 6567 6394 1 1116 3653 82 8 1 chr12 69610372 69610936 -51646594 + L1_Mus1 LINE L1 5365 5929 -638 1 1116 956 193 143 0 chr12 69611234 69611457 -51646073 + Lx3C LINE L1 6658 6912 -64 1 1116 412 282 49 78 chr12 69614828 69615032 -51642498 + B3A SINE B2 1 198 0 1 1116 22 0 0 0 chr12 69615037 69615059 -51642471 + AT_rich Low_complexity Low_complexity 1 22 0 1 1116 324 303 73 33 chr12 69615456 69615606 -51641924 - MTEa LTR MaLR -11 368 213 1 1116 573 304 26 48 chr12 69615606 69615834 -51641696 + MTEb LTR MaLR 157 379 0 1 1116 248 220 17 0 chr12 69615935 69615994 -51641536 + L1M4 LINE L1 2126 2185 -3961 1 1116 2644 70 8 16 chr12 69615989 69616365 -51641165 - Lx LINE L1 -521 6133 5761 1 1116 1726 154 23 3 chr12 69616365 69616665 -51640865 + Lx LINE L1 6349 6654 0 1 1116 21 0 0 0 chr12 69616715 69616736 -51640794 + AT_rich Low_complexity Low_complexity 1 21 0 1 1116 285 98 0 0 chr12 69616865 69616906 -51640624 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 1 1116 732 96 11 38 chr12 69616905 69617089 -51640441 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 1116 258 106 0 0 chr12 69617090 69617137 -51640393 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 1 1116 965 246 108 0 chr12 69617137 69617442 -51640088 - Lx9 LINE L1 -218 7426 7089 1 1116 337 333 40 0 chr12 69617644 69617743 -51639787 + MTE-int LTR MaLR 1435 1537 -43 1 1116 333 330 41 81 chr12 69617747 69617968 -51639562 + ORR1E LTR MaLR 14 225 -134 1 1116 823 236 88 24 chr12 69618011 69618244 -51639286 - MTD LTR MaLR 0 419 129 1 1116 667 218 51 67 chr12 69618269 69618406 -51639124 - Lx7 LINE L1 -1 7695 7566 1 1116 5916 57 4 19 chr12 69618406 69619177 -51638353 + L1_Mus1 LINE L1 5808 6566 -1 1 1116 667 218 51 67 chr12 69619177 69619353 -51638177 - Lx7 LINE L1 -131 7565 7388 1 1116 3621 115 42 37 chr12 69619357 69619946 -51637584 - MT2B LTR ERVL -8 593 2 1 1116 775 190 102 11 chr12 69619959 69620145 -51637385 - MTD LTR MaLR -216 203 1 1 1116 239 237 93 102 chr12 69620143 69620168 -51637362 + ORR1E LTR MaLR 271 294 -85 1 1116 424 306 25 25 chr12 69620168 69620366 -51637164 + B3A SINE B2 1 198 0 1 1116 239 237 93 102 chr12 69620366 69620448 -51637082 + ORR1E LTR MaLR 295 377 -2 1 1116 358 370 22 7 chr12 69620475 69620614 -51636916 - MLT1E3 LTR MaLR -63 561 421 1 1116 699 46 0 0 chr12 69621022 69621109 -51636421 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1116 915 267 75 4 chr12 69621373 69621651 -51635879 + MER2 DNA MER2_type 9 306 -39 1 1116 491 151 0 11 chr12 69621706 69621800 -51635730 + (TG)n Simple_repeat Simple_repeat 1 93 0 1 1116 471 243 38 146 chr12 69622569 69622598 -51634932 - B2_Mm2 SINE B2 -5 190 164 1 1116 1263 89 0 0 chr12 69622598 69622777 -51634753 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 1 1116 770 244 82 11 chr12 69622777 69622959 -51634571 - B3 SINE B2 -20 196 2 1 1116 433 328 121 32 chr12 69623212 69623624 -51633906 - L1M5 LINE L1 -2789 3357 2909 1 1116 1645 122 0 0 chr12 69623701 69623963 -51633567 - Lx2A1 LINE L1 -2 7006 6745 1 1116 858 47 23 0 chr12 69624251 69624379 -51633151 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 1 1116 3776 105 31 27 chr12 69624953 69625539 -51631991 + Lx LINE L1 6064 6651 -3 1 1116 35 63 0 0 chr12 69627444 69627507 -51630023 + AT_rich Low_complexity Low_complexity 1 63 0 1 1116 6768 221 78 11 chr12 69627942 69629039 -51628491 + Lx7 LINE L1 252 1425 -4455 1 1116 216 0 0 0 chr12 69629039 69629063 -51628467 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1116 6768 173 51 6 chr12 69629063 69630352 -51627178 + Lx7 LINE L1 1426 2775 -3105 1 1116 374 216 112 0 chr12 69630371 69630487 -51627043 + Lx6 LINE L1 5986 6114 -1346 1 1116 4395 171 43 18 chr12 69630494 69631560 -51625970 + Lx7 LINE L1 4928 6032 -1664 1 1116 1615 208 45 11 chr12 69631547 69631921 -51625609 + Lx7 LINE L1 6594 6980 -716 1 1116 393 22 0 0 chr12 69631921 69631967 -51625563 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1116 349 297 108 0 chr12 69631980 69632091 -51625439 + PB1 SINE Alu 3 125 -2 1 1116 23 54 0 0 chr12 69632299 69632336 -51625194 + AT_rich Low_complexity Low_complexity 1 37 0 1 1116 333 333 0 0 chr12 69632583 69632658 -51624872 - ID4 SINE ID -5 78 4 1 1116 435 286 171 18 chr12 69632805 69632969 -51624561 + B3A SINE B2 3 191 -7 1 1116 7947 123 34 21 chr12 69632992 69635094 -51622436 + L1VL4 LINE L1 594 2653 -3233 1 1116 1236 96 0 0 chr12 69635094 69635271 -51622259 + (GAA)n Simple_repeat Simple_repeat 3 179 0 1 1116 7213 170 30 47 chr12 69635271 69635540 -51621990 + L1VL4 LINE L1 2654 2921 -2965 1 1116 1154 62 0 14 chr12 69635547 69635684 -51621846 + B1_Mus2 SINE Alu 1 137 -10 1 1116 246 32 0 0 chr12 69635684 69635715 -51621815 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1116 2382 166 6 0 chr12 69635732 69636199 -51621331 + L1_Mur2 LINE L1 5114 5554 -323 1 1116 377 313 52 0 chr12 69637207 69637341 -51620189 - MIR SINE MIR -85 177 37 1 1116 546 109 0 0 chr12 69639033 69639134 -51618396 + (GA)n Simple_repeat Simple_repeat 2 102 0 1 1116 495 33 0 0 chr12 69640611 69640672 -51616858 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 1 1116 3314 160 42 14 chr12 69640729 69641380 -51616150 - Lx4B LINE L1 -679 6379 5711 1 1116 1412 169 4 0 chr12 69641383 69641631 -51615899 + Lx4B LINE L1 5444 5692 -185 1 1116 192 315 0 63 chr12 69641751 69641846 -51615684 + MIRb SINE MIR 114 202 -66 1 1116 342 0 0 0 chr12 69642517 69642555 -51614975 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1116 217 174 58 0 chr12 69643565 69643634 -51613896 + (TATAA)n Simple_repeat Simple_repeat 1 73 0 1 1116 3845 214 26 18 chr12 69644202 69644344 -51613186 - Lx6 LINE L1 -424 7036 6901 1 1116 243 0 0 0 chr12 69644344 69644371 -51613159 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1116 1494 30 0 0 chr12 69644371 69644677 -51612853 + (TG)n Simple_repeat Simple_repeat 1 306 0 1 1116 3845 214 26 18 chr12 69644677 69645367 -51612163 - Lx6 LINE L1 -560 6900 6194 1 1116 426 253 0 0 chr12 69645363 69645450 -51612080 + Lx6 LINE L1 7027 7113 -347 1 1116 375 23 0 0 chr12 69645451 69645495 -51612035 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1116 528 59 0 0 chr12 69645495 69645562 -51611968 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1116 1249 219 32 0 chr12 69645565 69645843 -51611687 + Lx6 LINE L1 7174 7460 0 1 1116 450 119 0 0 chr12 69646395 69646479 -51611051 + (GA)n Simple_repeat Simple_repeat 2 85 0 1 1116 257 390 105 26 chr12 69648496 69648762 -51608768 + LTR85a LTR Gypsy? 414 700 -2 1 1116 222 159 15 60 chr12 69648980 69649047 -51608483 + (CATA)n Simple_repeat Simple_repeat 3 66 0 1 1116 678 307 134 29 chr12 69649063 69649322 -51608208 - L1MA7 LINE L1 -360 5931 5582 1 1116 270 0 0 0 chr12 69649322 69649352 -51608178 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1116 992 289 117 23 chr12 69649352 69650260 -51607270 - L1MA7 LINE L1 -266 5581 4580 1 1116 270 0 0 0 chr12 69650260 69650290 -51607240 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1116 992 283 111 21 chr12 69650290 69650364 -51607166 - L1MA7 LINE L1 -1509 4634 4555 1 1116 264 59 0 0 chr12 69650383 69650417 -51607113 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2 1116 1091 229 185 29 chr12 69650432 69650746 -51606784 + MTD LTR MaLR 51 413 -6 2 1116 1461 306 96 38 chr12 69650752 69650806 -51606724 - L1M2 LINE L1 -1360 4520 4474 2 1116 3967 118 13 102 chr12 69650806 69651630 -51605900 - RMER17A LTR ERVK 0 751 1 2 1116 1580 297 66 40 chr12 69651630 69652303 -51605227 - L1M2 LINE L1 -1407 4473 3716 2 1116 778 228 38 33 chr12 69652303 69652516 -51605014 - B3 SINE B2 0 216 3 2 1116 1580 292 50 41 chr12 69652516 69652850 -51604680 - L1M2 LINE L1 -2397 3746 3415 2 1116 1966 164 62 15 chr12 69652850 69653252 -51604278 + MTC LTR MaLR 1 421 0 2 1116 1580 301 76 39 chr12 69653252 69653375 -51604155 - L1M2 LINE L1 -2729 3414 3265 2 1116 2020 29 0 0 chr12 69653927 69654165 -51603365 - L1Md_F3 LINE L1 -14 6570 6333 2 1116 267 292 118 21 chr12 69654283 69654531 -51602999 + L1MA9 LINE L1 5998 6260 -31 2 1116 659 362 103 44 chr12 69655522 69656032 -51601498 + MLT1J-int LTR MaLR 160 707 -680 2 1116 1638 117 14 191 chr12 69656032 69656530 -51601000 + RMER17C LTR ERVK 1 410 0 2 1116 659 362 103 44 chr12 69656530 69656562 -51600968 + MLT1J-int LTR MaLR 708 734 -653 2 1116 500 314 14 47 chr12 69656661 69656872 -51600658 - MER2 DNA MER2_type -52 293 90 2 1116 297 0 0 0 chr12 69656877 69656910 -51600620 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 1116 1118 95 6 0 chr12 69656910 69657068 -51600462 - B2_Mm1t SINE B2 -33 160 2 2 1116 460 308 186 26 chr12 69657147 69657534 -51599996 - MLT1D LTR MaLR -32 473 25 2 1116 373 309 89 0 chr12 69657602 69657725 -51599805 + MLT1J-int LTR MaLR 817 950 -437 2 1116 779 258 104 22 chr12 69658784 69659054 -51598476 - Lx9 LINE L1 -917 6727 6436 2 1116 2030 80 31 16 chr12 69659061 69659378 -51598152 + RLTRETN_Mm LTR ERVK 1 322 0 2 1116 2831 34 0 0 chr12 69659378 69659732 -51597798 + ETnERV-int LTR ERVK 1 354 -2960 2 1116 24192 30 11 10 chr12 69659703 69664281 -51593249 + MMETn-int LTR ERVK 180 4844 0 2 1116 2030 80 31 16 chr12 69664281 69664598 -51592932 + RLTRETN_Mm LTR ERVK 1 322 0 2 1116 286 234 0 15 chr12 69664599 69664664 -51592866 - Lx9 LINE L1 -1214 6430 6367 2 1116 219 235 0 0 chr12 69664700 69664751 -51592779 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 2 1116 2153 231 102 28 chr12 69664863 69665578 -51591952 - Lx9 LINE L1 -1619 6025 5215 2 1116 234 0 0 0 chr12 69665578 69665604 -51591926 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1116 207 0 0 0 chr12 69665608 69665631 -51591899 + (TTG)n Simple_repeat Simple_repeat 1 23 0 2 1116 2153 216 93 30 chr12 69665631 69665785 -51591745 - Lx9 LINE L1 -633 5214 5048 2 1116 234 91 0 0 chr12 69665872 69665905 -51591625 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 2 1116 1112 62 14 0 chr12 69665905 69666049 -51591481 - B1_Mus1 SINE Alu 0 148 3 2 1116 1250 279 12 84 chr12 69666052 69666549 -51590981 + Lx9 LINE L1 6894 7354 -290 2 1116 7028 47 4 0 chr12 69666631 69667535 -51589995 - L1Md_F2 LINE L1 -12 6570 5663 2 1116 21 36 0 0 chr12 69667805 69667833 -51589697 + AT_rich Low_complexity Low_complexity 1 28 0 2 1116 1125 62 0 0 chr12 69667928 69668074 -51589456 + (GGGAGA)n Simple_repeat Simple_repeat 5 150 0 2 1116 819 252 61 0 chr12 69668865 69669063 -51588467 - B3 SINE B2 -6 210 1 2 1116 398 291 47 16 chr12 69669178 69669307 -51588223 + MIR SINE MIR 18 150 -112 2 1116 373 339 83 16 chr12 69672115 69672307 -51585223 + MIRb SINE MIR 5 209 -59 2 1116 224 258 30 79 chr12 69673540 69673641 -51583889 - L2c LINE L2 -60 3327 3232 2 1116 1146 81 0 0 chr12 69673821 69673993 -51583537 + (TC)n Simple_repeat Simple_repeat 1 172 0 2 1116 1880 152 14 116 chr12 69674004 69674443 -51583087 - ORR1B1 LTR MaLR 0 394 1 2 1116 733 209 11 38 chr12 69674449 69674633 -51582897 - ORR1B1-int LTR MaLR -6 1364 1186 2 1116 29 0 0 0 chr12 69675465 69675494 -51582036 + AT_rich Low_complexity Low_complexity 1 29 0 2 1116 1093 71 0 14 chr12 69675495 69675637 -51581893 + B1_Mm SINE Alu 2 141 -6 2 1116 288 0 0 0 chr12 69675639 69675671 -51581859 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 2 1116 948 249 104 12 chr12 69675710 69676036 -51581494 - Charlie4a DNA MER1_type -55 453 98 2 1116 297 0 0 0 chr12 69676367 69676400 -51581130 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1116 797 267 40 55 chr12 69677214 69677416 -51580114 + B3 SINE B2 13 211 -5 2 1116 27 49 0 0 chr12 69678324 69678365 -51579165 + AT_rich Low_complexity Low_complexity 1 41 0 2 1116 280 188 171 14 chr12 69678727 69678797 -51578733 + ID4_ SINE ID 1 81 -2 2 1116 31 0 0 0 chr12 69678895 69678926 -51578604 + AT_rich Low_complexity Low_complexity 1 31 0 2 1116 296 338 115 43 chr12 69679543 69679917 -51577613 + MLT1E2 LTR MaLR 136 536 -91 2 1116 1276 114 11 0 chr12 69680132 69680316 -51577214 - B2_Mm1t SINE B2 -7 186 1 2 1116 424 235 0 107 chr12 69680382 69680498 -51577032 + PB1D9 SINE Alu 3 104 -45 2 1116 207 232 0 0 chr12 69680500 69680556 -51576974 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1116 810 279 84 42 chr12 69681436 69681889 -51575641 + L1MA7 LINE L1 5820 6291 0 2 1116 451 319 54 27 chr12 69682181 69682329 -51575201 - RSINE1 SINE B4 -11 154 3 2 1116 2580 69 47 3 chr12 69684392 69684755 -51572775 - L1_Mus3 LINE L1 -4 6634 6256 2 1116 1161 294 24 13 chr12 69685006 69685378 -51572152 + MTE2b LTR MaLR 1 376 -3 2 1116 503 322 12 43 chr12 69687557 69687719 -51569811 + MER5A1 DNA MER1_type 1 157 -9 2 1116 1111 102 0 0 chr12 69687775 69687922 -51569608 + B1_Mus2 SINE Alu 1 147 0 2 1116 207 0 0 0 chr12 69687922 69687945 -51569585 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1116 450 79 0 0 chr12 69688120 69688183 -51569347 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1116 919 306 153 8 chr12 69689529 69689928 -51567602 - MLT1C LTR MaLR -2 465 9 2 1116 771 330 43 18 chr12 69690129 69690407 -51567123 + B4A SINE B4 6 290 -2 2 1116 204 97 0 0 chr12 69690422 69690453 -51567077 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 2 1116 306 290 91 27 chr12 69690508 69690618 -51566912 - MIR3 SINE MIR -46 162 46 2 1116 182 392 0 40 chr12 69690901 69691002 -51566528 + MIRb SINE MIR 132 228 -40 2 1116 962 221 29 0 chr12 69692322 69692530 -51565000 - B3 SINE B2 -1 215 2 2 1116 198 118 0 0 chr12 69693365 69693399 -51564131 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 2 1116 810 70 0 0 chr12 69693438 69693552 -51563978 + (TTGG)n Simple_repeat Simple_repeat 2 115 0 2 1116 416 373 29 41 chr12 69693988 69694231 -51563299 - MIRb SINE MIR -6 262 23 2 1116 2282 57 3 7 chr12 69694410 69694712 -51562818 - L1_Mus2 LINE L1 -1 6565 6265 2 1116 481 346 68 103 chr12 69694761 69695218 -51562312 + LTR33B LTR ERVL 63 503 0 2 1116 2592 241 68 21 chr12 69695293 69696004 -51561526 - Lx6 LINE L1 -4 7456 6713 2 1116 522 91 0 0 chr12 69696471 69696548 -51560982 + (TA)n Simple_repeat Simple_repeat 2 78 0 2 1116 996 143 0 0 chr12 69697089 69697236 -51560294 - B1_Mus2 SINE Alu 0 147 1 2 1116 238 271 15 37 chr12 69697236 69697264 -51560266 - ORR1B1-int LTR MaLR -862 647 623 2 1116 270 309 19 62 chr12 69697797 69697959 -51559571 - LTR33A LTR ERVL 0 515 361 2 1116 349 408 90 39 chr12 69697980 69698235 -51559295 - LTR33A LTR ERVL -228 292 25 2 1116 215 233 0 0 chr12 69698694 69698737 -51558793 + (ATG)n Simple_repeat Simple_repeat 2 44 0 2 1116 1264 208 117 18 chr12 69698742 69699091 -51558439 + MTD LTR MaLR 26 404 -15 2 1116 202 299 15 15 chr12 69699253 69699321 -51558209 - L2 LINE L2 -1361 2058 1991 2 1116 363 270 0 11 chr12 69701956 69702046 -51555484 + 5S rRNA rRNA 1 89 -32 2 1116 396 0 0 0 chr12 69703061 69703105 -51554425 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1116 463 114 19 19 chr12 69704133 69704240 -51553290 + (CAGA)n Simple_repeat Simple_repeat 4 110 0 2 1116 668 254 14 7 chr12 69704341 69704484 -51553046 + RSINE1 SINE B4 4 147 -18 2 1116 1782 173 9 59 chr12 69704486 69704824 -51552706 - ORR1A4 LTR MaLR -8 321 1 2 1116 2217 48 0 0 chr12 69704876 69705144 -51552386 - L1Md_F2 LINE L1 -14 6568 6301 2 1116 229 386 64 0 chr12 69705170 69705310 -51552220 + MIRb SINE MIR 88 236 -32 2 1116 369 346 29 93 chr12 69705580 69705784 -51551746 - LTR88a LTR Gypsy -37 779 589 2 1116 360 0 0 0 chr12 69706018 69706058 -51551472 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1116 355 320 77 39 chr12 69707010 69707218 -51550312 + L1M5 LINE L1 5605 5820 -304 2 1116 329 305 102 19 chr12 69708167 69708324 -51549206 + Kanga1d DNA Tc2 164 333 -276 2 1116 791 264 58 30 chr12 69708490 69708811 -51548719 - ORR1D2 LTR MaLR 0 370 10 2 1116 324 351 47 7 chr12 69711315 69711464 -51546066 - MER5B DNA MER1_type -10 168 14 2 1116 1649 124 95 34 chr12 69711622 69711947 -51545583 - RMER1B Other Other -12 1054 710 2 1116 1335 75 20 41 chr12 69712224 69712419 -51545111 + B2_Mm2 SINE B2 4 194 -1 2 1116 616 80 20 0 chr12 69714072 69714172 -51543358 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 2 1116 227 274 148 52 chr12 69714866 69715001 -51542529 + MIR SINE MIR 26 173 -89 2 1116 2201 288 130 89 chr12 69715149 69716520 -51541010 + Lx8 LINE L1 6014 7440 -33 2 1116 698 261 89 33 chr12 69716504 69716931 -51540599 + Lx7 LINE L1 5733 6183 -1513 2 1116 521 110 10 0 chr12 69716932 69717032 -51540498 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 2 1116 624 50 0 0 chr12 69717032 69717111 -51540419 + (GAAA)n Simple_repeat Simple_repeat 4 83 0 2 1116 1349 88 8 12 chr12 69717123 69717374 -51540156 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 2 1116 797 235 20 41 chr12 69717562 69717814 -51539716 + Lx3C LINE L1 6650 6992 -66 2 1116 4071 39 0 0 chr12 69718065 69718551 -51538979 - L1Md_A LINE L1 0 6582 6097 2 1116 183 184 19 75 chr12 69719689 69719742 -51537788 + L4 LINE RTE 850 899 -1130 2 1116 696 287 55 43 chr12 69720183 69720438 -51537092 - ORR1E LTR MaLR -2 357 100 2 1116 294 254 695 0 chr12 69720446 69720564 -51536966 - RMER30 DNA MER1_type -1 201 2 2 1116 346 329 0 0 chr12 69720575 69720660 -51536870 - ORR1E LTR MaLR -285 85 1 2 1116 306 390 34 0 chr12 69720660 69720806 -51536724 + MIRb SINE MIR 42 192 -76 2 1116 3010 6 0 141 chr12 69722699 69723126 -51534404 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1116 53535 21 12 0 chr12 69723126 69729496 -51528034 - IAPEz-int LTR ERVK 0 6481 38 3 1116 3010 6 0 141 chr12 69729509 69729936 -51527594 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1117 186 43 0 0 chr12 69731693 69731716 -51525814 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1117 4801 96 37 0 chr12 69731825 69732500 -51525030 + L1_Mus3 LINE L1 5938 6637 -1 3 1117 555 316 170 32 chr12 69732983 69733360 -51524170 - LTR16A1 LTR ERVL -20 436 8 3 1117 864 260 17 101 chr12 69733388 69733675 -51523855 - Lx6 LINE L1 -275 7185 6942 3 1117 273 125 0 0 chr12 69733762 69733818 -51523712 + (TTGG)n Simple_repeat Simple_repeat 2 57 0 3 1117 186 191 0 0 chr12 69733876 69733918 -51523612 + GA-rich Low_complexity Low_complexity 3 44 0 3 1117 1015 80 58 0 chr12 69735150 69735288 -51522242 + B1_Mm SINE Alu 2 147 0 3 1117 1194 170 0 9 chr12 69735549 69735774 -51521756 - L1_Mur1 LINE L1 -351 5535 5313 3 1117 290 25 0 0 chr12 69735859 69735899 -51521631 - L1_Mm LINE L1 -1291 4592 4553 3 1117 356 136 0 0 chr12 69735917 69735976 -51521554 + L1_Mm LINE L1 4913 4971 -912 3 1117 3906 101 7 12 chr12 69735977 69736559 -51520971 + L1_Mus3 LINE L1 6059 6637 -1 3 1117 3869 221 36 30 chr12 69736577 69737816 -51519714 + L1_Rod LINE L1 1243 2489 -3358 3 1117 198 0 0 0 chr12 69737841 69737863 -51519667 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1117 1434 247 109 7 chr12 69737870 69738337 -51519193 + RMER4B LTR ERVK 38 585 0 3 1117 316 245 11 11 chr12 69738341 69738436 -51519094 + L1_Rod LINE L1 2488 2582 -3265 3 1117 1167 243 121 35 chr12 69738477 69738964 -51518566 + RMER1A Other Other 23 707 -359 3 1117 737 191 14 116 chr12 69739255 69739462 -51518068 + B2_Mm2 SINE B2 9 194 -1 3 1117 703 264 51 46 chr12 69740039 69740234 -51517296 - B3A SINE B2 -1 197 2 3 1117 233 236 52 43 chr12 69741460 69741575 -51515955 - L1MB7 LINE L1 0 6184 6069 3 1117 263 208 78 0 chr12 69741585 69741662 -51515868 - Lx8 LINE L1 -9 7464 7382 3 1117 3041 268 31 24 chr12 69742245 69743152 -51514378 - Lx8 LINE L1 -357 7116 6204 3 1117 668 160 263 0 chr12 69743202 69743377 -51514153 + URR1B DNA MER1_type 4 224 -1 3 1117 2092 40 0 4 chr12 69744278 69744531 -51512999 - L1Md_T LINE L1 0 6582 6331 3 1117 858 343 64 98 chr12 69745502 69746126 -51511404 + MER77 LTR ERVL 1 603 -4 3 1117 296 183 0 11 chr12 69746630 69746724 -51510806 + (TTGG)n Simple_repeat Simple_repeat 4 96 0 3 1117 4323 217 142 42 chr12 69747707 69747878 -51509652 - Lx9 LINE L1 0 7644 7462 3 1117 479 101 13 0 chr12 69747878 69747957 -51509573 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1117 4323 217 142 42 chr12 69747957 69749134 -51508396 - Lx9 LINE L1 -183 7461 6164 3 1117 936 40 177 0 chr12 69749572 69749696 -51507834 + B1_Mm SINE Alu 2 147 0 3 1117 231 344 108 31 chr12 69749925 69750054 -51507476 + RMER12 LTR ERVK 718 856 -466 3 1117 273 228 60 17 chr12 69750377 69750493 -51507037 + MT2A LTR ERVL 408 528 -5 3 1117 2105 158 46 0 chr12 69750525 69750723 -51506807 - ORR1B2 LTR MaLR -2 365 166 3 1117 477 0 0 0 chr12 69750723 69750776 -51506754 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1117 2105 158 46 0 chr12 69750776 69750926 -51506604 - ORR1B2 LTR MaLR -202 165 2 3 1117 189 0 0 0 chr12 69751970 69751991 -51505539 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3 1117 432 171 0 0 chr12 69752019 69752101 -51505429 + CT-rich Low_complexity Low_complexity 2 83 0 3 1117 366 333 0 0 chr12 69752112 69752205 -51505325 - B1F SINE Alu -51 98 6 3 1117 304 294 39 19 chr12 69752225 69752329 -51505201 + MER5B DNA MER1_type 6 111 -67 3 1117 234 363 99 21 chr12 69752433 69752675 -51504855 - L3 LINE CR1 -74 4415 4155 3 1117 270 294 35 35 chr12 69752826 69752939 -51504591 - MLT1A1 LTR MaLR 0 408 296 3 1117 558 133 26 0 chr12 69755333 69755446 -51502084 + (TAGA)n Simple_repeat Simple_repeat 4 119 0 3 1117 349 320 0 0 chr12 69755841 69755919 -51501611 + PB1D10 SINE Alu 19 96 -21 3 1117 229 200 0 52 chr12 69756146 69756204 -51501326 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1117 414 262 150 6 chr12 69756661 69756834 -51500696 - Charlie1b DNA MER1_type -8 515 318 3 1117 347 340 72 83 chr12 69756933 69757209 -51500321 - B4A SINE B4 -18 274 2 3 1117 427 288 68 0 chr12 69757303 69757449 -51500081 - Charlie1b DNA MER1_type -317 206 51 3 1117 364 229 33 0 chr12 69757605 69757727 -51499803 + (CATA)n Simple_repeat Simple_repeat 3 128 0 3 1117 201 385 76 9 chr12 69757729 69757834 -51499696 - MIRb SINE MIR -86 182 71 3 1117 5072 73 4 12 chr12 69758616 69759305 -51498225 - L1Md_F2 LINE L1 -12 6570 5887 3 1117 531 225 126 0 chr12 69759305 69759487 -51498043 - Lx9 LINE L1 -18 7626 7422 3 1117 403 312 113 82 chr12 69760795 69761253 -51496277 + MLT1F2 LTR MaLR 70 505 0 3 1117 299 311 126 0 chr12 69763862 69763965 -51493565 + PB1D10 SINE Alu 1 116 -1 3 1117 183 351 26 0 chr12 69764294 69764371 -51493159 + MIRc SINE MIR 36 114 -154 3 1117 231 259 149 0 chr12 69764508 69764622 -51492908 - MIRc SINE MIR -101 161 24 3 1117 340 236 0 0 chr12 69764707 69764779 -51492751 - MIRb SINE MIR -37 231 160 3 1117 880 251 9 60 chr12 69765803 69766036 -51491494 - B4 SINE B4 -69 223 3 3 1117 211 219 0 15 chr12 69766049 69766114 -51491416 + (GTTTG)n Simple_repeat Simple_repeat 2 65 0 3 1117 4658 37 26 0 chr12 69766578 69767145 -51490385 + L1Md_T LINE L1 5999 6580 -2 3 1117 302 326 122 7 chr12 69768251 69768390 -51489140 + HAL1-3A_ME LINE L1 2284 2438 -420 3 1117 688 214 0 0 chr12 69769028 69769145 -51488385 - ID_B1 SINE B4 -4 220 104 3 1117 598 268 42 7 chr12 69769145 69769167 -51488363 - B1F SINE Alu -1 144 1 3 1117 189 0 0 0 chr12 69769185 69769206 -51488324 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3 1117 2055 228 189 8 chr12 69769225 69769825 -51487705 - MER67C LTR ERV1 -16 695 3 3 1117 405 0 0 0 chr12 69769885 69769930 -51487600 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1117 369 0 0 0 chr12 69769930 69769970 -51487560 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1117 261 247 49 49 chr12 69770363 69770444 -51487086 + AmnSINE1 SINE SINE 495 575 0 3 1117 1244 239 26 11 chr12 69771073 69771340 -51486190 + MTE2b LTR MaLR 22 292 -87 3 1117 1121 148 20 1 chr12 69771337 69771536 -51485994 + ORR1B2 LTR MaLR 159 378 0 3 1117 1024 106 82 0 chr12 69771735 69771905 -51485625 - L1Md_F2 LINE L1 -26 6556 6373 3 1117 214 287 147 47 chr12 69772484 69772634 -51484896 + MIRb SINE MIR 95 259 -9 3 1117 304 125 15 15 chr12 69774211 69774276 -51483254 + (TATG)n Simple_repeat Simple_repeat 4 68 0 3 1117 324 290 37 18 chr12 69774488 69774597 -51482933 - B4A SINE B4 -180 112 2 3 1117 327 25 0 0 chr12 69774968 69775008 -51482522 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1117 375 297 51 20 chr12 69775482 69775678 -51481852 + L1MA5 LINE L1 5581 5782 -515 3 1117 348 24 0 0 chr12 69775678 69775719 -51481811 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 3 1117 335 271 78 28 chr12 69775780 69776022 -51481508 + L1MA5 LINE L1 5772 6022 -278 3 1117 24 0 0 0 chr12 69776760 69776784 -51480746 + AT_rich Low_complexity Low_complexity 1 24 0 3 1117 216 97 0 0 chr12 69778003 69778034 -51479496 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1117 1216 171 52 0 chr12 69779919 69780130 -51477400 - URR1B DNA MER1_type -3 222 1 3 1117 693 298 65 36 chr12 69780242 69780489 -51477041 - MTE2b LTR MaLR -121 258 5 3 1117 1674 248 140 12 chr12 69780493 69780992 -51476538 - MTE2b-int LTR MaLR 0 1580 1018 3 1117 2646 188 45 12 chr12 69780993 69781509 -51476021 + RMER5 LTR ERV1 1 533 -1 3 1117 727 302 132 33 chr12 69781879 69782273 -51475257 + MLT1E LTR MaLR 221 653 0 3 1117 476 200 9 0 chr12 69782539 69782654 -51474876 + (TG)n Simple_repeat Simple_repeat 2 117 0 3 1117 623 177 175 12 chr12 69782891 69783051 -51474479 + ORR1D1 LTR MaLR 189 374 0 3 1117 252 235 49 12 chr12 69783081 69783163 -51474367 - Lx9 LINE L1 -176 7468 7384 3 1117 1173 113 0 0 chr12 69784721 69784898 -51472632 + (GGGAA)n Simple_repeat Simple_repeat 4 180 0 3 1117 1090 118 10 49 chr12 69784954 69785159 -51472371 - Lx3B LINE L1 -3 6970 6774 3 1117 6924 83 26 1 chr12 69785170 69786152 -51471378 - L1_Mus3 LINE L1 -4 6634 5628 3 1117 733 110 0 0 chr12 69786146 69786255 -51471275 + L1_Mus3 LINE L1 5572 5680 -203 3 1117 885 19 0 0 chr12 69786923 69787026 -51470504 + (TCTCCC)n Simple_repeat Simple_repeat 1 103 0 3 1117 918 289 103 28 chr12 69787311 69787671 -51469859 - Charlie13a DNA Charlie -5 1509 1123 3 1117 1335 307 7 7 chr12 69787764 69788190 -51469340 - Lx8 LINE L1 -780 6693 6268 3 1117 180 0 0 0 chr12 69788192 69788212 -51469318 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 1117 1474 314 53 27 chr12 69788253 69788948 -51468582 + Lx8 LINE L1 6722 7434 -39 3 1117 1741 60 0 13 chr12 69789049 69789287 -51468243 - L1_Mus1 LINE L1 -87 6480 6246 3 1117 297 292 57 0 chr12 69789361 69789467 -51468063 - Charlie13a DNA Charlie -440 1074 963 3 1117 23 0 0 0 chr12 69790805 69790828 -51466702 + AT_rich Low_complexity Low_complexity 1 23 0 3 1117 25 0 0 0 chr12 69790931 69790956 -51466574 + AT_rich Low_complexity Low_complexity 1 25 0 3 1117 219 139 0 0 chr12 69791793 69791829 -51465701 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1117 259 381 29 18 chr12 69791974 69792145 -51465385 - MER5A DNA MER1_type -10 179 7 3 1117 1210 255 56 5 chr12 69792206 69792600 -51464930 + L1MA4 LINE L1 5523 5936 -364 3 1117 268 275 0 32 chr12 69792603 69792727 -51464803 + (TA)n Simple_repeat Simple_repeat 1 120 0 3 1117 732 71 0 0 chr12 69794595 69794694 -51462836 + (TTGG)n Simple_repeat Simple_repeat 2 100 0 3 1117 320 269 73 61 chr12 69794954 69795162 -51462368 + MIRc SINE MIR 5 223 -45 3 1117 32186 66 17 5 chr12 69797235 69802391 -51455139 - L1Md_A LINE L1 -249 5634 422 3 1117 235 174 0 21 chr12 69802474 69802521 -51455009 + MIR SINE MIR 110 155 -107 3 1117 477 80 0 0 chr12 69803957 69804032 -51453498 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 1117 662 315 5 38 chr12 69804050 69804193 -51453337 - B3A SINE B2 -18 180 43 4 1117 1347 252 24 40 chr12 69804193 69804569 -51452961 - ORR1D2 LTR MaLR 0 370 1 4 1117 662 315 5 38 chr12 69804569 69804610 -51452920 - B3A SINE B2 -156 42 2 4 1117 422 380 122 48 chr12 69804649 69804986 -51452544 + MER115 DNA Tip100 3 364 -329 4 1117 39477 5 0 0 chr12 69806434 69812802 -51444728 - L1Md_A LINE L1 0 6582 214 4 1117 38 51 0 0 chr12 69813537 69813596 -51443934 + AT_rich Low_complexity Low_complexity 1 59 0 4 1117 416 310 7 7 chr12 69813610 69813756 -51443774 + Lx7 LINE L1 7176 7321 -375 4 1117 396 0 0 0 chr12 69813783 69813827 -51443703 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1117 5955 159 57 14 chr12 69814010 69814596 -51442934 + L1_Mur2 LINE L1 3759 4368 -1509 4 1117 4189 58 2 8 chr12 69814596 69815130 -51442400 - L1Md_F2 LINE L1 -6 6576 6046 4 1117 5955 159 57 14 chr12 69815130 69815799 -51441731 + L1_Mur2 LINE L1 4369 5068 -809 4 1117 1186 286 44 7 chr12 69815809 69816274 -51441256 + Lx6 LINE L1 5859 6363 -687 4 1117 1134 299 95 20 chr12 69816307 69816844 -51440686 + Lx6 LINE L1 6506 7460 0 4 1117 754 286 81 89 chr12 69817039 69817666 -51439864 - L1MA9 LINE L1 -1446 4694 4073 4 1117 333 297 129 22 chr12 69817651 69817875 -51439655 + L1MA9 LINE L1 4714 4961 -1179 4 1117 1434 241 35 50 chr12 69817880 69818165 -51439365 - ORR1D2 LTR MaLR 0 370 84 4 1117 1419 164 0 0 chr12 69818165 69818390 -51439140 + URR1B DNA MER1_type 1 225 0 4 1117 1434 241 35 50 chr12 69818390 69818480 -51439050 - ORR1D2 LTR MaLR -287 83 1 4 1117 316 242 11 11 chr12 69818480 69818572 -51438958 + L1MA9 LINE L1 4962 5053 -1087 4 1117 271 261 0 33 chr12 69818620 69818711 -51438819 + GA-rich Low_complexity Low_complexity 2 89 0 4 1117 647 300 89 29 chr12 69818906 69819647 -51437883 + L1MA9 LINE L1 5431 6220 -92 4 1117 25 75 0 0 chr12 69819677 69819730 -51437800 + AT_rich Low_complexity Low_complexity 1 53 0 4 1117 26 0 0 0 chr12 69819865 69819891 -51437639 + AT_rich Low_complexity Low_complexity 1 26 0 4 1117 1264 239 26 13 chr12 69819982 69820359 -51437171 + L1M2 LINE L1 3277 3658 -2485 4 1117 327 408 22 11 chr12 69820568 69820749 -51436781 - L1M3a LINE L1 -5507 448 266 4 1117 759 313 125 77 chr12 69820774 69821501 -51436029 + RMER13A LTR ERVK 14 775 -85 4 1117 282 29 0 0 chr12 69822337 69822372 -51435158 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 4 1117 426 298 10 0 chr12 69822380 69822484 -51435046 - PB1D10 SINE Alu -8 109 5 4 1117 333 386 67 22 chr12 69822905 69823400 -51434130 + Tigger5 DNA MER2_type 543 1059 -1347 4 1117 5551 209 26 67 chr12 69823504 69825080 -51432450 - Lx9 LINE L1 0 7644 6134 4 1117 204 61 14 96 chr12 69825172 69825245 -51432285 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 4 1117 308 325 44 98 chr12 69825647 69825706 -51431824 + Tigger5 DNA MER2_type 1638 1686 -720 4 1117 3220 35 108 11 chr12 69825706 69826139 -51431391 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1117 308 325 44 98 chr12 69826139 69826396 -51431134 + Tigger5 DNA MER2_type 1687 1937 -469 4 1117 412 298 29 0 chr12 69826598 69826702 -51430828 + PB1D10 SINE Alu 1 107 -10 4 1117 432 82 0 0 chr12 69826702 69826763 -51430767 + (ATG)n Simple_repeat Simple_repeat 3 63 0 4 1117 594 318 26 65 chr12 69826796 69827025 -51430505 + B4A SINE B4 11 230 -62 4 1117 531 0 0 0 chr12 69827344 69827403 -51430127 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1117 466 254 43 9 chr12 69827579 69827694 -51429836 + MTEb LTR MaLR 67 185 -194 4 1117 603 259 30 0 chr12 69827768 69827899 -51429631 + B1_Mur1 SINE Alu 10 144 -5 4 1117 622 280 121 5 chr12 69827917 69828107 -51429423 + MTEb LTR MaLR 168 379 0 4 1117 348 284 10 59 chr12 69830574 69830675 -51426855 + RSINE1 SINE B4 9 104 -61 4 1117 1222 235 78 3 chr12 69830849 69831169 -51426361 + Lx6 LINE L1 7068 7411 -49 4 1117 695 283 31 20 chr12 69831181 69831381 -51426149 + B3 SINE B2 8 210 -6 4 1117 21 0 0 0 chr12 69831586 69831607 -51425923 + AT_rich Low_complexity Low_complexity 1 21 0 4 1117 1850 304 60 53 chr12 69831924 69832298 -51425232 + Lx8 LINE L1 6487 6841 -632 4 1117 702 228 0 39 chr12 69832298 69832453 -51425077 - B1_Mur1 SINE Alu 0 149 1 4 1117 1850 304 60 53 chr12 69832453 69832912 -51424618 + Lx8 LINE L1 6842 7326 -147 4 1117 666 146 29 0 chr12 69833837 69833974 -51423556 + GA-rich Low_complexity Low_complexity 3 143 0 4 1117 211 136 44 22 chr12 69833974 69833994 -51423536 + polypurine Low_complexity Low_complexity 1 20 0 4 1117 1256 67 0 27 chr12 69833994 69834179 -51423351 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1117 211 136 44 22 chr12 69834179 69834203 -51423327 + polypurine Low_complexity Low_complexity 21 46 0 4 1117 231 36 0 0 chr12 69835592 69835620 -51421910 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1117 365 254 97 94 chr12 69835756 69836030 -51421500 + MLT1A LTR MaLR 1 326 -48 4 1117 710 223 68 42 chr12 69836035 69836061 -51421469 - B3A SINE B2 -1 197 174 4 1117 444 82 0 0 chr12 69836061 69836122 -51421408 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1117 710 223 68 42 chr12 69836122 69836287 -51421243 - B3A SINE B2 -25 173 1 4 1117 213 333 28 0 chr12 69836398 69836470 -51421060 + L3 LINE CR1 4355 4428 -61 4 1117 566 344 5 9 chr12 69836665 69836882 -51420648 + ID_B1 SINE B4 2 217 -7 4 1117 698 271 28 17 chr12 69837464 69837644 -51419886 + B3A SINE B2 17 198 0 4 1117 6620 187 13 29 chr12 69838960 69840675 -51416855 + Lx5 LINE L1 984 2671 -3206 4 1117 8950 158 48 14 chr12 69840670 69841355 -51416175 + Lx5 LINE L1 4048 4734 -1143 4 1117 252 0 0 0 chr12 69841355 69841383 -51416147 + (TAA)n Simple_repeat Simple_repeat 2 29 0 4 1117 8950 183 38 12 chr12 69841383 69843598 -51413932 + Lx5 LINE L1 4735 7037 -13 4 1117 359 240 7 0 chr12 69844332 69844478 -51413052 + (TG)n Simple_repeat Simple_repeat 1 147 0 4 1117 562 196 0 22 chr12 69844495 69844678 -51412852 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1117 203 265 0 0 chr12 69845229 69845278 -51412252 + MIRm SINE MIR 213 261 -15 4 1117 2831 8 5 151 chr12 69846163 69846593 -51410937 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1117 6903 86 99 71 chr12 69846593 69847863 -51409667 + IAPEz-int LTR ERVK 8 1313 -5168 4 1117 20193 12 0 0 chr12 69847862 69850206 -51407324 + IAPEz-int LTR ERVK 3210 5554 -927 4 1117 6619 30 4 1 chr12 69850199 69851008 -51406522 + IAPEz-int LTR ERVK 5671 6481 0 4 1117 2831 8 5 151 chr12 69851008 69851438 -51406092 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1117 975 281 55 35 chr12 69851804 69852262 -51405268 + MLT1C LTR MaLR 1 467 0 4 1117 189 132 0 0 chr12 69852302 69852340 -51405190 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 4 1117 306 0 0 0 chr12 69852344 69852378 -51405152 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1117 180 200 0 0 chr12 69852420 69852460 -51405070 + GA-rich Low_complexity Low_complexity 2 41 0 4 1117 3061 94 7 2 chr12 69852631 69853089 -51404441 + L1_Mm LINE L1 4755 5214 -669 4 1117 335 102 0 0 chr12 69853084 69853133 -51404397 + L1_Mm LINE L1 5535 5583 -300 4 1117 183 402 0 0 chr12 69853476 69853558 -51403972 - L2 LINE L2 -635 2784 2703 4 1117 418 259 8 33 chr12 69854338 69854458 -51403072 - MLT1A1 LTR MaLR 0 408 292 4 1117 660 13 0 0 chr12 69855117 69855194 -51402336 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1117 947 62 14 7 chr12 69855238 69855384 -51402146 + L1_Mus3 LINE L1 6491 6637 -1 4 1117 221 239 0 0 chr12 69856372 69856418 -51401112 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1117 7671 50 1 1 chr12 69856455 69857820 -51399710 - L1Md_F2 LINE L1 0 6582 5220 4 1117 1167 194 24 5 chr12 69858182 69858394 -51399136 - B3 SINE B2 0 216 1 4 1117 281 264 0 11 chr12 69859413 69859501 -51398029 - L1MA9 LINE L1 -63 6249 6163 4 1117 22 0 0 0 chr12 69860300 69860322 -51397208 + AT_rich Low_complexity Low_complexity 1 22 0 4 1117 630 322 98 17 chr12 69860588 69861068 -51396462 - LTR40a LTR ERVL 0 519 1 4 139 592 334 55 79 chr12 69861351 69861844 -51395686 - MLT1E2 LTR MaLR -2 625 45 4 1118 318 320 51 25 chr12 69861904 69862061 -51395469 + MER5A1 DNA MER1_type 4 164 -2 4 1118 589 186 0 0 chr12 69862191 69862293 -51395237 - Lx9 LINE L1 -854 6790 6689 4 1118 248 242 104 81 chr12 69862299 69862510 -51395020 + Lx9 LINE L1 7419 7634 -10 4 1118 34 24 0 0 chr12 69862523 69862564 -51394966 + AT_rich Low_complexity Low_complexity 1 41 0 4 1118 29 78 0 0 chr12 69862881 69862945 -51394585 + AT_rich Low_complexity Low_complexity 1 64 0 4 1118 1516 153 12 8 chr12 69863836 69864092 -51393438 - Lx4A LINE L1 -1 7057 6801 4 1118 870 135 0 0 chr12 69864520 69864661 -51392869 + (GAAA)n Simple_repeat Simple_repeat 3 143 0 4 1118 502 250 81 72 chr12 69864784 69864944 -51392586 + L1M2 LINE L1 3798 3997 -2146 4 1118 1032 81 7 0 chr12 69864944 69865080 -51392450 + B1_Mus2 SINE Alu 1 137 -10 4 1118 1019 88 7 0 chr12 69865080 69865228 -51392302 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 4 1118 502 239 81 76 chr12 69865228 69865334 -51392196 + L1M2 LINE L1 3970 4096 -2047 4 1118 259 256 0 24 chr12 69865353 69865437 -51392093 + L1MA6 LINE L1 5855 5936 -364 4 1118 650 273 96 46 chr12 69865615 69865895 -51391635 - Lx9 LINE L1 -363 7281 6988 4 1118 1541 278 77 42 chr12 69866229 69867104 -51390426 + L1M2 LINE L1 2587 3491 -2652 4 1118 724 273 27 27 chr12 69867134 69867390 -51390140 + Lx8 LINE L1 7218 7473 0 4 1118 586 298 100 14 chr12 69867405 69867756 -51389774 + L1M2 LINE L1 3500 3880 -2263 4 1118 397 262 91 16 chr12 69867815 69868001 -51389529 + L1MA6 LINE L1 6040 6239 -61 4 1118 371 291 71 45 chr12 69868188 69868343 -51389187 + RSINE1 SINE B4 4 162 -3 4 1118 201 39 0 0 chr12 69869890 69869916 -51387614 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1118 4947 44 2 0 chr12 69870276 69870862 -51386668 - LTRIS_Mus LTR ERV1 0 587 1 4 1118 349 170 26 18 chr12 69871435 69871549 -51385981 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1118 229 274 59 0 chr12 69871561 69871663 -51385867 - L1_Rod LINE L1 -11 5836 5729 4 1118 380 169 39 7 chr12 69871663 69871818 -51385712 + (TG)n Simple_repeat Simple_repeat 2 161 0 4 1118 1122 56 0 37 chr12 69871844 69872031 -51385499 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1118 328 299 50 72 chr12 69872033 69872255 -51385275 - Lx7 LINE L1 -517 5783 5569 4 1118 276 77 0 0 chr12 69872278 69872317 -51385213 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1118 892 131 23 8 chr12 69873205 69873466 -51384064 + CT-rich Low_complexity Low_complexity 1 265 0 4 1118 271 195 15 23 chr12 69873691 69873822 -51383708 + (TA)n Simple_repeat Simple_repeat 2 131 0 4 1118 770 316 106 96 chr12 69874247 69874664 -51382866 - MLT1F1 LTR MaLR 0 569 140 4 1118 4856 73 1 24 chr12 69874692 69875346 -51382184 + Lx3A LINE L1 6323 6966 -15 4 1118 231 36 0 0 chr12 69875346 69875374 -51382156 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 1118 4856 73 1 24 chr12 69875374 69875393 -51382137 + Lx3A LINE L1 6967 6981 0 4 1118 3080 196 75 3 chr12 69876874 69877050 -51380480 - Lx9 LINE L1 0 7644 7420 4 1118 321 26 0 0 chr12 69877050 69877088 -51380442 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1118 3080 196 75 3 chr12 69877088 69877643 -51379887 - Lx9 LINE L1 -225 7419 6861 4 1118 204 125 0 0 chr12 69877953 69877985 -51379545 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1118 492 229 122 41 chr12 69878510 69878706 -51378824 + LTR81B LTR ERV1? 4 215 -1178 5 1118 299 242 176 0 chr12 69878719 69878810 -51378720 + L2a LINE L2 3305 3411 -15 5 1118 201 74 0 0 chr12 69878812 69878839 -51378691 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 5 1118 302 221 42 59 chr12 69879464 69879562 -51377968 - MLT1E1 LTR MaLR -17 663 527 5 1118 1408 220 131 0 chr12 69879580 69879930 -51377600 - MTD LTR MaLR -17 402 7 5 1118 669 347 106 58 chr12 69879934 69880203 -51377327 - MLT1E1 LTR MaLR -108 546 267 5 1118 1703 176 38 40 chr12 69880203 69880576 -51376954 - ORR1D1 LTR MaLR 0 374 3 5 1118 669 347 106 58 chr12 69880576 69880789 -51376741 - MLT1E1 LTR MaLR -388 266 41 5 1118 4937 61 1 8 chr12 69881197 69881844 -51375686 - L1Md_F2 LINE L1 0 6582 5940 5 1118 10612 54 2 1 chr12 69881844 69883263 -51374267 + L1_Mm LINE L1 3623 5043 -840 5 1118 1366 195 99 11 chr12 69883590 69883942 -51373588 + Lx2B LINE L1 6615 6997 -3 5 1118 187 339 131 30 chr12 69884005 69884203 -51373327 - MIR SINE MIR -42 220 3 5 1118 675 147 0 0 chr12 69885779 69885895 -51371635 + (CTG)n Simple_repeat Simple_repeat 1 116 0 5 1118 217 259 37 0 chr12 69886713 69886767 -51370763 + GA-rich Low_complexity Low_complexity 4 59 0 5 1118 627 71 0 0 chr12 69886767 69886852 -51370678 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 5 1118 1298 73 6 0 chr12 69886854 69887033 -51370497 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1118 489 17 0 0 chr12 69887130 69887188 -51370342 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1118 279 325 32 16 chr12 69887422 69887547 -51369983 + MIR SINE MIR 12 138 -124 5 1118 1047 59 0 0 chr12 69887841 69887977 -51369553 - L1_Mus2 LINE L1 -2 6564 6429 5 1118 306 0 0 0 chr12 69888454 69888488 -51369042 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1118 402 74 0 0 chr12 69888492 69888546 -51368984 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1118 944 300 88 0 chr12 69888906 69889339 -51368191 - L1MB7 LINE L1 -7 7037 6567 5 1118 1563 146 8 27 chr12 69889341 69889602 -51367928 + L1Md_F3 LINE L1 6313 6568 -16 5 1118 399 189 16 8 chr12 69889895 69890023 -51367507 + (TAGA)n Simple_repeat Simple_repeat 3 131 0 5 1118 397 276 56 83 chr12 69890023 69890146 -51367384 - L1MB7 LINE L1 -875 6131 5997 5 1118 517 241 118 64 chr12 69890146 69890184 -51367346 - B3 SINE B2 0 216 183 5 1118 279 0 0 0 chr12 69890184 69890215 -51367315 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1118 517 241 118 64 chr12 69890215 69890380 -51367150 - B3 SINE B2 -34 182 2 5 1118 397 276 56 83 chr12 69890380 69890544 -51366986 - L1MB7 LINE L1 -1010 5996 5852 5 1118 296 260 62 0 chr12 69890737 69890833 -51366697 - L1MB7 LINE L1 -1270 5736 5635 5 1118 2255 209 160 16 chr12 69890872 69891361 -51366169 - RLTR31A_Mm LTR ERVK 0 561 3 5 1118 1363 288 108 82 chr12 69891398 69892489 -51365041 - L1MB7 LINE L1 -1465 5541 4422 5 1118 392 288 45 6 chr12 69892511 69892668 -51364862 - L1MB7 LINE L1 -3377 3629 3467 5 1118 315 229 32 12 chr12 69892664 69892773 -51364757 - L1MB7 LINE L1 -5396 1508 1357 5 1118 763 327 98 26 chr12 69892802 69893330 -51364200 - L1MB7 LINE L1 -5573 1331 766 5 1118 3030 138 21 63 chr12 69893349 69893906 -51363624 + RLTR20C LTR ERVK 1 534 0 5 1118 618 273 173 40 chr12 69894442 69894743 -51362787 + LTR86C LTR ERVL 272 612 -9 5 1118 534 16 0 0 chr12 69895264 69895327 -51362203 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1118 21 36 0 0 chr12 69896224 69896252 -51361278 + AT_rich Low_complexity Low_complexity 1 28 0 5 1118 3138 85 0 15 chr12 69896756 69897162 -51360368 + MTB LTR MaLR 1 400 0 5 1118 450 0 0 0 chr12 69898770 69898820 -51358710 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1118 292 246 11 48 chr12 69898922 69899023 -51358507 - MTEb LTR MaLR 0 379 278 5 1118 1246 240 44 64 chr12 69899320 69899708 -51357822 + RLTR14 LTR ERV1 3 382 0 5 1118 775 296 10 4 chr12 69899791 69900005 -51357525 - B3A SINE B2 0 216 2 5 1118 592 320 13 19 chr12 69900657 69900848 -51356682 + B3A SINE B2 15 203 -13 5 1118 751 55 18 0 chr12 69901158 69901267 -51356263 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1118 192 226 43 101 chr12 69901408 69901477 -51356053 - L4 LINE RTE -964 1065 1001 5 1118 21 0 0 0 chr12 69901810 69901831 -51355699 + AT_rich Low_complexity Low_complexity 1 21 0 5 1118 1723 191 55 22 chr12 69902147 69902512 -51355018 + RLTR11A2 LTR ERVK 151 527 0 5 1118 690 274 16 24 chr12 69903002 69903192 -51354338 - ID_B1 SINE B4 -20 272 84 5 1118 492 128 0 0 chr12 69903334 69903412 -51354118 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1118 585 223 87 5 chr12 69904044 69904229 -51353301 - Charlie5 DNA MER1_type -43 2581 2382 5 1118 351 356 112 34 chr12 69905121 69905595 -51351935 - L2 LINE L2 -946 2473 1963 5 1118 549 30 0 0 chr12 69905663 69905730 -51351800 + (TGG)n Simple_repeat Simple_repeat 2 68 0 5 1118 455 213 138 9 chr12 69905824 69905933 -51351597 - PB1 SINE Alu -4 123 1 5 1118 253 271 69 50 chr12 69906486 69906587 -51350943 + MIRb SINE MIR 104 206 -62 5 1118 215 31 0 30 chr12 69907473 69907506 -51350024 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 1118 3926 147 45 13 chr12 69907514 69908198 -51349332 - Lx3C LINE L1 -23 6953 6248 5 1118 203 147 0 0 chr12 69908698 69908732 -51348798 + (CCTG)n Simple_repeat Simple_repeat 2 35 0 5 1118 369 0 0 0 chr12 69909039 69909080 -51348450 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1118 717 274 93 19 chr12 69909896 69909929 -51347601 + B4A SINE B4 3 38 -254 5 1118 333 0 0 0 chr12 69909929 69909966 -51347564 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1118 717 274 93 19 chr12 69909966 69910200 -51347330 + B4A SINE B4 39 290 -2 5 1118 269 246 13 104 chr12 69910201 69910278 -51347252 + B4A SINE B4 223 292 0 5 1118 327 327 10 0 chr12 69910827 69910928 -51346602 + LFSINE_Vert SINE SINE 75 176 -283 5 1118 188 191 0 106 chr12 69911344 69911391 -51346139 - L4 LINE RTE -539 1490 1449 5 1118 2302 251 42 4 chr12 69911413 69911961 -51345569 + Lx7 LINE L1 6739 7307 -389 5 1118 405 0 0 0 chr12 69911966 69912011 -51345519 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1118 1890 192 8 43 chr12 69912533 69912904 -51344626 + ORR1B2 LTR MaLR 1 358 -9 5 1118 257 151 19 0 chr12 69913122 69913175 -51344355 + T-rich Low_complexity Low_complexity 1 54 0 5 1118 420 251 29 49 chr12 69913256 69913432 -51344098 - B3 SINE B2 -4 191 27 5 1118 6376 81 7 7 chr12 69913460 69914285 -51343245 - L1_Mus4 LINE L1 -3 6633 5809 5 1118 270 293 3 50 chr12 69914392 69914499 -51343031 - L2a LINE L2 -9 3417 3283 5 1118 324 0 0 0 chr12 69916059 69916095 -51341435 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1118 245 221 103 0 chr12 69916476 69916544 -51340986 - RLTR24 LTR ERV1 -454 75 1 5 1118 876 232 35 100 chr12 69916663 69916885 -51340645 + B4A SINE B4 2 213 -79 5 1118 366 23 0 0 chr12 69916885 69916928 -51340602 + (ATG)n Simple_repeat Simple_repeat 2 44 0 5 1118 876 232 35 100 chr12 69916928 69917016 -51340514 + B4A SINE B4 214 292 0 5 1118 183 42 0 0 chr12 69917533 69917557 -51339973 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1118 470 344 8 0 chr12 69917575 69917703 -51339827 - B3 SINE B2 -34 182 54 5 1118 383 0 0 21 chr12 69917705 69917753 -51339777 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1118 2874 70 6 6 chr12 69917761 69918120 -51339410 - L1_Mus3 LINE L1 -6 6632 6274 5 1118 245 258 80 137 chr12 69918596 69918771 -51338759 + RLTR41 LTR ERV1 251 415 -31 5 1118 1762 81 4 0 chr12 69918786 69919020 -51338510 - L1_Mus3 LINE L1 -360 6278 6044 5 1118 358 200 0 0 chr12 69919020 69919080 -51338450 - B3 SINE B2 -154 62 3 5 1118 284 258 36 79 chr12 69919085 69919224 -51338306 - L1MA7 LINE L1 0 6291 6159 5 1118 1155 252 83 76 chr12 69919259 69919667 -51337863 + MTD LTR MaLR 8 418 -1 5 1118 354 302 32 32 chr12 69919671 69919859 -51337671 - L1MA7 LINE L1 -245 6046 5859 5 1118 330 91 0 0 chr12 69919878 69919933 -51337597 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 5 1118 1144 274 16 0 chr12 69919987 69920242 -51337288 - B4A SINE B4 -5 287 29 5 1118 403 336 33 16 chr12 69921748 69921869 -51335661 + B4A SINE B4 11 133 -159 5 1118 818 295 32 24 chr12 69921933 69922180 -51335350 + B4A SINE B4 1 249 -43 5 1118 321 89 0 0 chr12 69922216 69922261 -51335269 + (GGGA)n Simple_repeat Simple_repeat 3 47 0 5 1118 276 273 0 0 chr12 69922297 69922352 -51335178 + B4A SINE B4 226 280 -12 5 1118 438 20 0 0 chr12 69922372 69922423 -51335107 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1118 1032 266 0 14 chr12 69922849 69923066 -51334464 + B3 SINE B2 2 215 -1 5 1118 463 287 50 22 chr12 69923243 69923382 -51334148 - RSINE1 SINE B4 -2 163 21 5 1118 1218 274 120 18 chr12 69923776 69924266 -51333264 + Charlie7 DNA MER1_type 1722 2261 -351 5 1118 570 281 0 0 chr12 69924275 69924396 -51333134 + B3 SINE B2 1 121 -95 5 1118 250 241 52 0 chr12 69924393 69924451 -51333079 + tRNA-Ala-GCY_ tRNA tRNA 11 71 -4 5 1118 1965 172 18 60 chr12 69924509 69924539 -51332991 - ORR1C2 LTR MaLR 0 384 361 5 1118 2659 88 188 0 chr12 69924539 69924939 -51332591 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1118 1965 172 18 60 chr12 69924939 69925309 -51332221 - ORR1C2 LTR MaLR -24 360 1 5 1118 1783 213 60 18 chr12 69925435 69925871 -51331659 - Lx7 LINE L1 -1271 6425 5972 5 1118 3109 194 63 20 chr12 69926243 69927043 -51330487 - Lx7 LINE L1 -1720 5976 5148 5 1118 212 302 0 16 chr12 69930248 69930312 -51327218 + CT-rich Low_complexity Low_complexity 2 64 0 5 1118 394 333 91 7 chr12 69931075 69931229 -51326301 + MER58A DNA MER1_type 1 167 -57 5 1118 335 351 8 8 chr12 69931479 69931608 -51325922 + MLT1A LTR MaLR 244 372 -2 5 1118 4422 35 2 0 chr12 69931620 69932111 -51325419 + L1Md_T LINE L1 6091 6582 0 5 1118 197 260 40 0 chr12 69932163 69932213 -51325317 - MIR SINE MIR -198 64 13 5 1118 230 284 20 40 chr12 69932437 69932536 -51324994 + (TGAA)n Simple_repeat Simple_repeat 1 97 0 5 1118 836 289 5 5 chr12 69932585 69932780 -51324750 + B3A SINE B2 2 196 -2 5 1118 976 246 122 36 chr12 69932878 69933209 -51324321 + ORR1E LTR MaLR 1 371 -8 5 1118 288 365 0 9 chr12 69933756 69933861 -51323669 + MER5B DNA MER1_type 4 107 -71 5 1118 233 266 0 15 chr12 69934469 69934534 -51322996 + RMER1B Other Other 38 101 -965 5 1118 207 69 0 0 chr12 69934899 69934928 -51322602 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5 1118 22 56 0 0 chr12 69935583 69935619 -51321911 + AT_rich Low_complexity Low_complexity 1 36 0 6 1118 314 314 47 0 chr12 69936418 69936504 -51321026 + LTR33A_ LTR ERVL 80 169 -362 6 1118 2358 182 50 2 chr12 69936567 69937008 -51320522 + Lx3C LINE L1 6504 6965 -11 6 1118 588 65 0 0 chr12 69937009 69937086 -51320444 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 6 1118 1228 82 0 0 chr12 69937586 69937732 -51319798 + B1_Mus2 SINE Alu 1 146 -1 6 1118 275 233 0 43 chr12 69938072 69938260 -51319270 + G-rich Low_complexity Low_complexity 1 180 0 6 1118 288 0 0 0 chr12 69938617 69938649 -51318881 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1118 1213 271 13 52 chr12 69938722 69939103 -51318427 + Lx9 LINE L1 7081 7446 -198 6 1118 862 188 79 25 chr12 69939143 69939345 -51318185 - ORR1C2 LTR MaLR 0 384 172 6 1118 772 191 29 113 chr12 69939351 69939620 -51317910 - ORR1D1 LTR MaLR -119 259 10 6 1118 353 232 26 26 chr12 69939629 69939744 -51317786 + Lx9 LINE L1 7515 7629 -15 6 1118 6091 42 0 1 chr12 69939776 69940468 -51317062 + L1Md_F2 LINE L1 5877 6567 -15 6 1118 882 228 91 10 chr12 69940493 69940692 -51316838 - B3 SINE B2 0 216 2 6 1118 390 240 52 0 chr12 69942025 69942121 -51315409 + MTE2a LTR MaLR 1 101 -278 6 1118 563 261 45 19 chr12 69942150 69942306 -51315224 - B3 SINE B2 -55 161 2 6 1118 1106 234 51 44 chr12 69942319 69942592 -51314938 + MTE2a LTR MaLR 103 377 -2 6 1118 1045 154 0 96 chr12 69943010 69943218 -51314312 + L1VL4 LINE L1 6 193 -6109 6 1118 7257 81 48 9 chr12 69943217 69944268 -51313262 + MusHAL1 LINE L1 541 1631 -1081 6 1118 845 148 97 0 chr12 69944261 69944416 -51313114 - Lx LINE L1 -820 5063 4894 6 1118 6660 133 22 26 chr12 69944414 69945996 -51311534 + Lx LINE L1 5064 6653 -1 6 1118 603 0 0 0 chr12 69946276 69946343 -51311187 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 1118 284 260 0 52 chr12 69946483 69946560 -51310970 + MTEa LTR MaLR 6 78 -301 6 1118 1331 282 79 7 chr12 69946556 69946960 -51310570 + MT2A LTR ERVL 101 533 0 6 1118 591 15 0 0 chr12 69947868 69947936 -51309594 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1118 23 0 0 0 chr12 69948528 69948551 -51308979 + AT_rich Low_complexity Low_complexity 1 23 0 6 1118 240 271 21 0 chr12 69948965 69949013 -51308517 + ID4 SINE ID 1 49 -34 6 1118 485 268 192 16 chr12 69949769 69950029 -51307501 + Lx9 LINE L1 7330 7635 -9 6 1118 663 226 0 0 chr12 69950037 69950196 -51307334 + (TA)n Simple_repeat Simple_repeat 2 160 0 6 1118 200 114 68 0 chr12 69951308 69951352 -51306178 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1118 1374 221 14 40 chr12 69951587 69951936 -51305594 - Lx6 LINE L1 0 7696 7357 6 1118 8557 87 12 5 chr12 69952039 69954043 -51303487 - L1VL4 LINE L1 -1527 2032 26 6 1118 521 237 58 54 chr12 69954045 69954250 -51303280 - Lx6 LINE L1 -1566 6130 5925 6 1118 8131 72 1 13 chr12 69954256 69955378 -51302152 + L1_Mus4 LINE L1 5528 6636 0 6 1118 12752 151 31 13 chr12 69955381 69956656 -51300874 - Lx6 LINE L1 -1526 5934 4637 6 1118 798 76 0 0 chr12 69956656 69956775 -51300755 + (TTGG)n Simple_repeat Simple_repeat 2 120 0 6 1118 12752 151 29 14 chr12 69956775 69957755 -51299775 - Lx6 LINE L1 -1244 4636 3643 6 1118 771 206 101 17 chr12 69957758 69957936 -51299594 - MTC LTR MaLR -8 413 221 6 1118 1849 230 38 5 chr12 69957919 69958338 -51299192 - ORR1C1-int LTR MaLR -1076 433 1 6 1118 2448 125 18 39 chr12 69958340 69958723 -51298807 - ORR1C1 LTR MaLR -3 375 1 6 1118 730 176 15 0 chr12 69958728 69958859 -51298671 - Lx6 LINE L1 -2248 3632 3500 6 1118 198 0 0 0 chr12 69958898 69958920 -51298610 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 6 1118 309 51 0 0 chr12 69958922 69958961 -51298569 + (GTTTG)n Simple_repeat Simple_repeat 5 43 0 6 1118 3985 275 60 17 chr12 69959371 69960557 -51296973 + Lx8 LINE L1 6229 7465 -8 6 1118 2408 86 11 25 chr12 69961130 69961487 -51296043 + Lx LINE L1 6303 6654 0 6 1118 386 38 0 19 chr12 69961904 69961957 -51295573 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 6 1118 390 372 7 0 chr12 69961959 69962107 -51295423 - B1F2 SINE Alu 0 149 1 6 1118 186 43 0 0 chr12 69964042 69964065 -51293465 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1118 198 0 0 0 chr12 69965051 69965073 -51292457 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1118 315 241 35 46 chr12 69965215 69965302 -51292228 + MLT1A LTR MaLR 58 143 -231 6 1118 207 297 96 54 chr12 69968007 69968174 -51289356 + L3 LINE CR1 3248 3421 -1068 6 1118 500 352 62 54 chr12 69968272 69968644 -51288886 + LTR16E1 LTR ERVL 85 459 -79 6 1118 295 386 122 4 chr12 69969132 69969369 -51288161 + L3 LINE CR1 3960 4224 -265 6 1118 257 302 92 33 chr12 69970721 69970841 -51286689 - MIR SINE MIR -50 212 86 6 1118 2166 197 22 2 chr12 69971222 69971634 -51285896 + Lx9 LINE L1 7006 7425 -219 6 1118 468 0 0 0 chr12 69971638 69971690 -51285840 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1118 488 209 19 38 chr12 69971691 69971850 -51285680 + Lx9 LINE L1 7489 7644 0 6 1118 219 254 0 0 chr12 69971950 69972009 -51285521 + A-rich Low_complexity Low_complexity 1 59 0 6 1118 273 311 36 39 chr12 69972379 69972564 -51284966 - B3A SINE B2 -8 187 4 6 1118 648 321 40 68 chr12 69972572 69972896 -51284634 - ORR1E LTR MaLR -44 315 1 6 1118 561 281 144 4 chr12 69972921 69973150 -51284380 + L1MA7 LINE L1 6001 6261 -30 6 1118 797 134 81 5 chr12 69973159 69973327 -51284203 + B2_Mm2 SINE B2 2 182 -11 6 1118 21 36 0 0 chr12 69974772 69974800 -51282730 + AT_rich Low_complexity Low_complexity 1 28 0 6 1118 390 42 0 0 chr12 69974816 69974864 -51282666 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1118 398 69 17 0 chr12 69974864 69974921 -51282609 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1118 470 129 12 0 chr12 69975550 69975635 -51281895 + (TTGG)n Simple_repeat Simple_repeat 1 86 0 6 1118 21 0 0 0 chr12 69975722 69975743 -51281787 + AT_rich Low_complexity Low_complexity 1 21 0 6 1118 334 298 320 50 chr12 69975944 69976312 -51281218 - MamGypLTR1b LTR Gypsy -315 469 2 6 1118 24 0 0 0 chr12 69976313 69976337 -51281193 + AT_rich Low_complexity Low_complexity 1 24 0 6 1118 558 43 0 0 chr12 69977271 69977340 -51280190 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 6 1118 22 0 0 0 chr12 69977578 69977600 -51279930 + AT_rich Low_complexity Low_complexity 1 22 0 6 1118 375 263 79 0 chr12 69977997 69978073 -51279457 + ID4 SINE ID 2 83 0 6 1118 706 226 150 92 chr12 69979710 69979983 -51277547 - B4A SINE B4 0 292 4 6 1118 1145 308 30 30 chr12 69981413 69981629 -51275901 + Lx7 LINE L1 5389 5596 -284 6 1118 1672 151 97 94 chr12 69981629 69982010 -51275520 - ORR1C2 LTR MaLR -2 382 1 6 1118 1145 308 30 30 chr12 69982010 69982192 -51275338 + Lx7 LINE L1 5597 5787 -93 6 1118 256 135 0 0 chr12 69982192 69982229 -51275301 + B1_Mus1 SINE Alu 1 37 -111 6 1118 804 291 155 30 chr12 69982230 69982624 -51274906 + Lx7 LINE L1 6185 6627 -1069 6 1118 395 233 127 41 chr12 69982687 69982884 -51274646 + Lx7 LINE L1 7465 7678 -18 6 1118 21 36 0 0 chr12 69983076 69983104 -51274426 + AT_rich Low_complexity Low_complexity 1 28 0 6 1118 337 309 9 43 chr12 69984005 69984120 -51273410 - MLT1A0 LTR MaLR -191 174 64 6 1118 2192 310 84 36 chr12 69984527 69985498 -51272032 + MLT1G3-int LTR MaLR 1 1018 -391 6 1118 265 229 43 0 chr12 69985970 69986040 -51271490 + MLT1G3 LTR MaLR 495 567 -28 6 1118 1555 156 15 162 chr12 69986147 69986628 -51270902 - RMER17C LTR ERVK 0 410 1 6 1118 422 269 9 27 chr12 69986743 69986854 -51270676 + PB1D10 SINE Alu 1 109 -8 6 1118 630 278 140 25 chr12 69987602 69987838 -51269692 - ORR1E LTR MaLR -96 263 1 6 1118 666 145 0 9 chr12 69988573 69988684 -51268846 + ORR1C2 LTR MaLR 1 110 -274 6 1118 479 176 220 0 chr12 69988698 69988789 -51268741 + ORR1C2 LTR MaLR 190 300 -84 6 1118 2756 137 58 10 chr12 69988789 69989276 -51268254 + RLTR28 LTR ERVL 1 510 -14 6 1118 352 152 90 112 chr12 69989295 69989384 -51268146 + ORR1C2 LTR MaLR 298 384 0 6 1118 189 239 43 0 chr12 69989466 69989512 -51268018 + L2c LINE L2 3109 3156 -231 6 1118 240 35 0 0 chr12 69989562 69989591 -51267939 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1118 354 382 100 35 chr12 69991681 69991971 -51265559 + LTR16A LTR ERVL 38 346 -105 6 1119 536 311 138 55 chr12 69993024 69993351 -51264179 - ORR1E LTR MaLR 0 359 6 6 1119 718 254 118 5 chr12 69994454 69994640 -51262890 + B3 SINE B2 2 208 -8 6 1119 529 268 36 0 chr12 69994652 69994764 -51262766 + B1F SINE Alu 23 138 -11 6 1119 235 286 39 70 chr12 69994764 69994780 -51262750 - YREP_Mm Unknown Unknown -1518 294 171 6 1119 1447 221 67 17 chr12 69995141 69995440 -51262090 + ORR1D2 LTR MaLR 6 319 -51 6 1119 256 149 0 41 chr12 69995489 69995534 -51261996 + URR1B DNA MER1_type 85 127 -98 6 1119 1931 123 6 73 chr12 69995534 69995875 -51261655 + ORR1A3 LTR MaLR 1 318 -8 6 1119 678 124 16 40 chr12 69995854 69995980 -51261550 + URR1B DNA MER1_type 103 225 0 6 1119 323 158 18 0 chr12 69995981 69996038 -51261492 + ORR1D2 LTR MaLR 313 370 0 6 1119 2523 227 86 8 chr12 69997132 69997668 -51259862 - Lx7 LINE L1 -904 6792 6215 6 1119 1844 153 106 11 chr12 69997669 69998019 -51259511 + Lx7 LINE L1 6796 7178 -518 6 1119 314 294 48 10 chr12 69998021 69998124 -51259406 + MER67C LTR ERV1 295 401 -310 6 1119 241 268 98 0 chr12 69998240 69998322 -51259208 + MER94 DNA AcHobo 2 91 -43 6 1119 384 22 0 0 chr12 69998323 69998368 -51259162 + (TAA)n Simple_repeat Simple_repeat 2 46 0 6 1119 2025 135 44 179 chr12 69998637 69999134 -51258396 + RLTR23 LTR ERV1 1 430 0 6 1119 5070 129 61 5 chr12 69999146 70000000 -51257530 + L1Md_F LINE L1 347 1250 -4633 6 1119 32675 73 3 2 chr12 70000000 70004330 -51253200 + L1Md_F2 LINE L1 1251 5586 -297 1 1119 7942 61 0 5 chr12 70004330 70005318 -51252212 + L1Md_F2 LINE L1 5587 6569 -13 1 1119 207 315 0 0 chr12 70006077 70006131 -51251399 - MER5B DNA MER1_type 0 178 125 2 1119 397 278 15 60 chr12 70006263 70006397 -51251133 + RMER20B LTR ERVK 33 160 -467 3 1119 38 39 0 0 chr12 70006815 70006867 -51250663 + AT_rich Low_complexity Low_complexity 1 52 0 4 1119 914 262 0 14 chr12 70006929 70007138 -51250392 - B3 SINE B2 -6 210 5 5 1119 310 20 82 0 chr12 70007159 70007208 -51250322 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 6 1119 1787 269 68 11 chr12 70009075 70009601 -51247929 - Lx8 LINE L1 -693 6780 6225 7 1119 621 364 46 44 chr12 70010527 70011001 -51246529 + MLT1J LTR MaLR 36 510 -2 8 1119 358 35 69 0 chr12 70013919 70013977 -51243553 - L1_Mus3 LINE L1 -5 6633 6572 9 1119 181 269 90 0 chr12 70014646 70014713 -51242817 - L3b LINE CR1 -173 309 237 1 1119 2130 111 232 43 chr12 70014838 70015299 -51242231 - RLTR6_Mm LTR ERV1 -70 584 37 1 1119 50798 15 20 0 chr12 70015408 70023038 -51234492 - RLTR6-int LTR ERV1 0 7778 1 1 1119 2255 108 221 43 chr12 70023038 70023521 -51234009 - RLTR6_Mm LTR ERV1 -49 605 37 1 1119 911 148 10 62 chr12 70023733 70023927 -51233603 + B2_Mm2 SINE B2 11 194 -1 1 1119 367 268 12 0 chr12 70023938 70024020 -51233510 + ID4 SINE ID 1 83 0 1 1119 263 217 67 0 chr12 70024039 70024099 -51233431 + L1M3 LINE L1 5768 5831 -349 1 1119 21513 151 24 6 chr12 70024099 70027136 -51230394 + L1VL2 LINE L1 399 3483 -2400 1 1119 243 0 0 0 chr12 70027136 70027163 -51230367 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1119 21513 159 12 6 chr12 70027163 70028761 -51228769 + L1VL2 LINE L1 3484 5088 -795 1 1119 41946 18 0 3 chr12 70028788 70036386 -51221144 - L1Md_A LINE L1 0 6582 1 1 1119 1485 117 0 5 chr12 70036385 70036609 -51220921 + L1_Mur2 LINE L1 5070 5292 -585 1 1119 24357 75 2 5 chr12 70036605 70040566 -51216964 + L1Md_Gf LINE L1 405 4450 -1436 2 1119 727 68 39 0 chr12 70040562 70040665 -51216865 + Lx LINE L1 468 574 -6150 2 1119 35176 28 1 43 chr12 70040660 70044631 -51212899 + Lx LINE L1 1616 5586 -297 2 1119 8602 31 1 0 chr12 70044631 70045626 -51211904 + L1Md_T LINE L1 5587 6582 0 2 1119 35176 67 27 25 chr12 70045626 70046851 -51210679 + Lx LINE L1 5587 6654 0 2 1119 1244 89 0 6 chr12 70046880 70047061 -51210469 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1119 771 183 6 11 chr12 70047066 70047243 -51210287 + GA-rich Low_complexity Low_complexity 3 178 0 2 1119 459 219 108 14 chr12 70047253 70047401 -51210129 + L1MB2 LINE L1 5820 5981 -190 2 1119 703 253 47 77 chr12 70047582 70047882 -51209648 + B4 SINE B4 1 291 -1 2 1119 223 246 0 47 chr12 70048183 70048247 -51209283 + GA-rich Low_complexity Low_complexity 5 65 0 2 1119 429 304 0 43 chr12 70048549 70048690 -51208840 + B4 SINE B4 158 292 0 2 1119 334 281 7 43 chr12 70048962 70049103 -51208427 + MIR SINE MIR 57 192 -70 2 1119 273 297 49 0 chr12 70049421 70049523 -51208007 + B4 SINE B4 82 193 -99 3 1119 430 177 8 8 chr12 70049538 70049663 -51207867 + CT-rich Low_complexity Low_complexity 2 126 0 3 1119 860 123 0 5 chr12 70049676 70049883 -51207647 + (TC)n Simple_repeat Simple_repeat 1 205 0 3 1119 1163 87 121 0 chr12 70050665 70050838 -51206692 + B2_Mm2 SINE B2 2 195 0 3 1119 740 102 195 13 chr12 70050859 70051008 -51206522 + Lx3_Mus LINE L1 6832 7007 -2 3 1119 1223 247 15 109 chr12 70051125 70051520 -51206010 + MTE2a LTR MaLR 14 371 -8 3 1119 450 0 0 0 chr12 70051933 70051983 -51205547 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1119 234 91 0 0 chr12 70052056 70052089 -51205441 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1119 275 212 12 0 chr12 70052160 70052240 -51205290 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1119 224 255 35 21 chr12 70052273 70052417 -51205113 + (TA)n Simple_repeat Simple_repeat 1 146 0 3 1119 212 0 0 35 chr12 70052840 70052869 -51204661 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1119 949 228 122 35 chr12 70053098 70053384 -51204146 - Lx6 LINE L1 -8 7452 7142 4 1119 242 111 0 0 chr12 70053969 70054005 -51203525 + U2 snRNA snRNA 1 36 -152 4 1119 351 276 59 7 chr12 70054033 70054186 -51203344 + L1MA4 LINE L1 5771 5931 -369 4 1119 2516 62 41 0 chr12 70054740 70055060 -51202470 - Lx2 LINE L1 -1 6565 6233 4 1119 6255 141 25 0 chr12 70055310 70056656 -51200874 - Lx2 LINE L1 -754 6243 4862 4 1119 4299 167 3 3 chr12 70056658 70057336 -51200194 + Lx LINE L1 5971 6648 -6 4 1119 13486 55 6 5 chr12 70057469 70059836 -51197694 - L1Md_F2 LINE L1 0 6582 4213 4 1119 35863 45 1 4 chr12 70059844 70064912 -51192618 + L1Md_T LINE L1 139 5589 -297 4 1119 8823 36 8 0 chr12 70064912 70065900 -51191630 + L1Md_T LINE L1 5590 6585 0 4 1119 10214 22 0 0 chr12 70065903 70067063 -51190467 + L1Md_T LINE L1 4427 5586 -297 4 1119 8953 35 3 0 chr12 70067063 70068056 -51189474 + L1Md_T LINE L1 5587 6582 0 4 1119 524 291 27 75 chr12 70068072 70068258 -51189272 + MLT1D LTR MaLR 1 177 -328 4 1119 274 232 138 35 chr12 70068254 70068370 -51189160 + MLT1D LTR MaLR 377 504 -1 4 1119 588 214 67 22 chr12 70068832 70068966 -51188564 + B1F SINE Alu 9 148 -1 4 1119 189 310 94 37 chr12 70069157 70069348 -51188182 + L2c LINE L2 3116 3317 -70 5 1119 210 262 0 0 chr12 70069314 70069356 -51188174 + MIRm SINE MIR 158 199 -77 5 1119 275 317 0 19 chr12 70069632 70069738 -51187792 + RMER1B Other Other 401 504 -562 5 1119 2061 224 64 172 chr12 70069921 70070780 -51186750 + RMER1B Other Other 298 1063 -3 5 1119 25 0 0 0 chr12 70070780 70070805 -51186725 + AT_rich Low_complexity Low_complexity 1 25 0 5 1119 336 268 71 0 chr12 70071044 70071171 -51186359 + Charlie5 DNA MER1_type 2387 2522 -102 5 1119 1164 200 15 0 chr12 70071174 70071374 -51186156 + ID_B1 SINE B4 1 203 -21 5 1119 2369 82 30 59 chr12 70071397 70071736 -51185794 + ORR1A4 LTR MaLR 1 329 0 5 1119 225 0 0 0 chr12 70071785 70071810 -51185720 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1119 1737 151 156 6 chr12 70073221 70073410 -51184120 - ORR1C1 LTR MaLR 0 378 160 5 1119 759 94 0 0 chr12 70073410 70073537 -51183993 + (GA)n Simple_repeat Simple_repeat 1 127 0 6 1119 1737 151 156 6 chr12 70073537 70073674 -51183856 - ORR1C1 LTR MaLR -219 159 4 5 1119 21 36 0 0 chr12 70074811 70074839 -51182691 + AT_rich Low_complexity Low_complexity 1 28 0 6 1119 472 280 55 59 chr12 70074954 70075208 -51182322 + Charlie2a DNA MER1_type 82 334 -2527 6 1119 477 50 0 0 chr12 70075292 70075352 -51182178 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 6 1119 554 41 0 14 chr12 70075416 70075490 -51182040 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 6 1119 261 329 25 0 chr12 70075631 70075710 -51181820 + ID4_ SINE ID 3 83 0 6 1119 2050 119 23 0 chr12 70075792 70076094 -51181436 - Lx2 LINE L1 -1 6996 6688 6 1119 22 35 0 0 chr12 70076098 70076127 -51181403 + AT_rich Low_complexity Low_complexity 1 29 0 6 1119 236 225 204 43 chr12 70076433 70076526 -51181004 + MLT1A LTR MaLR 267 374 0 6 1119 1015 292 24 17 chr12 70076573 70076862 -51180668 + B4A SINE B4 2 292 0 6 1119 21 0 0 0 chr12 70077263 70077284 -51180246 + AT_rich Low_complexity Low_complexity 1 21 0 7 1119 23 0 0 0 chr12 70078500 70078523 -51179007 + AT_rich Low_complexity Low_complexity 1 23 0 7 1119 2282 153 54 34 chr12 70079064 70079510 -51178020 - RMER6B LTR ERVK -5 456 2 7 1119 678 299 23 27 chr12 70081232 70081452 -51176078 + MER20 DNA MER1_type 1 219 0 7 1119 335 260 110 37 chr12 70081482 70081618 -51175912 + MamGypLTR1d LTR Gypsy 17 162 -651 7 1119 261 0 0 0 chr12 70081626 70081655 -51175875 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1119 270 356 75 63 chr12 70081655 70081829 -51175701 + MamGypLTR1d LTR Gypsy 210 385 -418 7 1119 255 214 133 0 chr12 70082028 70082126 -51175404 - ORR1D1 LTR MaLR 0 374 264 7 1119 1679 149 4 7 chr12 70082265 70082536 -51174994 - MTC LTR MaLR 0 421 152 7 1119 1023 59 0 7 chr12 70082549 70082677 -51174853 + B1_Mm SINE Alu 10 137 -10 7 1119 306 0 0 0 chr12 70082677 70082711 -51174819 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1119 422 260 0 20 chr12 70082719 70082821 -51174709 - MTC LTR MaLR -321 100 1 7 1119 244 279 33 0 chr12 70082821 70082878 -51174652 - ORR1E LTR MaLR -224 135 77 8 1119 603 259 31 12 chr12 70083031 70083191 -51174339 + RSINE1 SINE B4 3 165 0 8 1119 279 0 0 0 chr12 70083467 70083498 -51174032 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1119 272 287 5 0 chr12 70083548 70083622 -51173908 - MLT1I LTR MaLR -346 143 74 8 1119 417 336 42 58 chr12 70084361 70084618 -51172912 + B4 SINE B4 28 274 -18 8 1119 210 118 0 0 chr12 70084621 70084655 -51172875 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1119 318 274 0 10 chr12 70085728 70085831 -51171699 + (TA)n Simple_repeat Simple_repeat 2 103 0 8 1119 386 139 14 0 chr12 70085831 70085903 -51171627 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 8 1119 543 284 0 0 chr12 70087331 70087447 -51170083 - PB1D10 SINE Alu 0 117 2 8 1119 341 232 21 37 chr12 70087765 70087878 -51169652 + MTEa LTR MaLR 246 373 -6 8 1119 28 0 0 26 chr12 70088083 70088095 -51169435 + AT_rich Low_complexity Low_complexity 1 12 0 9 1119 6626 26 1 0 chr12 70088095 70088813 -51168717 + L1Md_F2 LINE L1 5864 6582 0 9 1119 28 0 0 26 chr12 70088813 70088839 -51168691 + AT_rich Low_complexity Low_complexity 1 26 0 9 1119 1113 8 0 0 chr12 70088903 70089029 -51168501 + (GAA)n Simple_repeat Simple_repeat 2 127 0 9 1119 731 72 0 0 chr12 70089159 70089256 -51168274 - RMER6C LTR ERVK -94 596 500 9 1119 1190 130 279 61 chr12 70089257 70089285 -51168245 - RMER6C LTR ERVK -310 380 348 9 1119 771 93 0 0 chr12 70089285 70089403 -51168127 + (AACTG)n Simple_repeat Simple_repeat 2 119 0 9 1119 1190 130 279 61 chr12 70089403 70089686 -51167844 - RMER6C LTR ERVK -343 347 2 9 1119 290 115 19 0 chr12 70089686 70089738 -51167792 - RMER6-int LTR ERVK 0 3177 3125 9 1119 830 216 0 0 chr12 70089855 70089994 -51167536 + B1_Mur4 SINE Alu 1 139 -11 9 1119 706 262 20 9 chr12 70090638 70090798 -51166732 - ID_B1 SINE B4 -41 251 82 9 1119 277 326 13 66 chr12 70090663 70090814 -51166716 + YREP_Mm Unknown Unknown 184 326 -1486 9 1119 546 228 81 0 chr12 70090842 70090978 -51166552 + B1_Mus2 SINE Alu 1 147 0 9 1119 452 280 92 35 chr12 70091123 70091297 -51166233 + MARNA DNA Mariner 174 357 -229 1 1119 880 315 9 14 chr12 70091603 70091819 -51165711 + B4A SINE B4 2 216 -76 1 1119 1890 121 18 62 chr12 70091816 70091878 -51165652 - ORR1A4 LTR MaLR -8 321 272 1 1119 201 74 0 0 chr12 70091878 70091905 -51165625 + (TTAGGG)n Simple_repeat Simple_repeat 4 30 0 1 1119 1890 121 18 62 chr12 70091905 70092178 -51165352 - ORR1A4 LTR MaLR -58 271 1 1 1119 301 258 45 0 chr12 70092201 70092267 -51165263 + B4A SINE B4 217 285 -7 1 1119 223 295 42 83 chr12 70093411 70093507 -51164023 + L2a LINE L2 3335 3426 0 1 1119 729 266 153 33 chr12 70094052 70094293 -51163237 + B4 SINE B4 3 272 -20 1 1119 369 0 0 0 chr12 70094296 70094337 -51163193 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1119 2745 80 3 0 chr12 70094438 70094764 -51162766 - ORR1A2 LTR MaLR 0 327 1 1 1119 22 88 0 0 chr12 70094912 70094969 -51162561 + AT_rich Low_complexity Low_complexity 1 57 0 1 1119 612 281 14 7 chr12 70095004 70095151 -51162379 + RSINE1 SINE B4 1 148 -17 1 1119 527 133 77 11 chr12 70096177 70096268 -51161262 - B1_Mur4 SINE Alu -7 143 47 1 1119 207 0 0 0 chr12 70099132 70099155 -51158375 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1119 782 219 55 0 chr12 70099171 70099317 -51158213 + RSINE1 SINE B4 12 165 0 1 1119 2299 107 87 3 chr12 70099450 70099806 -51157724 + ORR1B1 LTR MaLR 1 386 -8 1 1119 292 279 63 0 chr12 70100050 70100129 -51157401 - RSINE1 SINE B4 -79 86 3 1 1119 460 298 0 0 chr12 70100295 70100416 -51157114 + MLT-int LTR MaLR 1568 1688 -47 1 1119 1056 305 15 23 chr12 70100414 70100756 -51156774 - MER2 DNA MER2_type -5 340 2 1 1119 671 309 19 5 chr12 70100817 70101025 -51156505 + MLT1A0 LTR MaLR 3 213 -152 1 1119 852 26 0 25 chr12 70101580 70101698 -51155832 + (TTCCC)n Simple_repeat Simple_repeat 4 118 0 1 1119 1090 211 162 81 chr12 70102027 70102212 -51155318 - MTEa LTR MaLR -6 373 150 1 1119 1535 71 16 0 chr12 70102212 70102396 -51155134 - B2_Mm2 SINE B2 -7 188 2 1 1119 1090 211 162 81 chr12 70102396 70102555 -51154975 - MTEa LTR MaLR -230 149 1 1 1119 794 341 72 46 chr12 70102592 70103007 -51154523 + MLT1F LTR MaLR 117 542 -6 1 1119 2593 139 25 0 chr12 70103685 70104053 -51153477 - Lx5 LINE L1 -3 7047 6671 1 1119 1842 135 4 0 chr12 70104057 70104324 -51153206 + Lx5 LINE L1 6372 6639 -411 1 1119 222 233 0 0 chr12 70104586 70104646 -51152884 + GA-rich Low_complexity Low_complexity 1 60 0 1 1119 225 329 11 34 chr12 70104740 70104828 -51152702 + MIRb SINE MIR 20 105 -163 1 1119 201 214 71 0 chr12 70104844 70104886 -51152644 + MIRc SINE MIR 88 132 -136 1 1119 246 191 104 60 chr12 70105024 70105091 -51152439 - RLTR21 LTR ERVK -162 1410 1341 1 1119 1919 246 256 89 chr12 70105126 70105404 -51152126 - RLTR22_Mur LTR ERVK -217 1631 1319 1 1119 369 0 0 0 chr12 70105404 70105445 -51152085 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1119 1919 246 256 89 chr12 70105445 70105829 -51151701 - RLTR22_Mur LTR ERVK -530 1318 696 1 1119 1529 73 10 15 chr12 70105829 70106024 -51151506 + B2_Mm2 SINE B2 2 195 0 1 1119 1919 246 256 89 chr12 70106024 70106754 -51150776 - RLTR22_Mur LTR ERVK -1153 695 6 1 1119 580 298 148 5 chr12 70107120 70107329 -51150201 - LTR16B2 LTR ERVL -196 266 28 1 1119 501 32 0 0 chr12 70107366 70107429 -51150101 + (TTGG)n Simple_repeat Simple_repeat 1 63 0 1 1119 222 189 0 0 chr12 70107711 70107748 -51149782 + polypurine Low_complexity Low_complexity 1 37 0 1 1119 30 0 0 0 chr12 70108050 70108080 -51149450 + AT_rich Low_complexity Low_complexity 1 30 0 1 1119 662 297 27 94 chr12 70108445 70108523 -51149007 + B4A SINE B4 13 85 -207 1 1119 979 175 0 0 chr12 70108523 70108666 -51148864 + B1_Mur3 SINE Alu 2 144 -5 1 1119 662 297 27 94 chr12 70108666 70108801 -51148729 + B4A SINE B4 86 211 -81 1 1119 299 212 65 94 chr12 70108801 70108931 -51148599 - RLTR21 LTR ERVK 0 1572 1530 1 1119 245 29 29 0 chr12 70108996 70109030 -51148500 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1119 393 22 0 0 chr12 70109030 70109076 -51148454 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1119 6453 105 28 168 chr12 70109125 70109297 -51148233 - RLTR21 LTR ERVK -160 1244 1094 1 1119 378 61 0 0 chr12 70109297 70109346 -51148184 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1119 6453 136 67 35 chr12 70109346 70110380 -51147150 - RLTR21 LTR ERVK -479 1093 5 1 1119 2188 104 3 3 chr12 70110393 70110710 -51146820 + ORR1A2 LTR MaLR 3 319 -8 1 1119 189 0 0 0 chr12 70110723 70110744 -51146786 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1119 304 282 0 0 chr12 70110744 70110815 -51146715 + B4A SINE B4 216 286 -6 1 1119 486 306 43 51 chr12 70111357 70111591 -51145939 - MER106A DNA MER1_type -1 235 4 1 1119 208 264 19 0 chr12 70111716 70111769 -51145761 + MIR SINE MIR 104 157 -105 1 1119 1176 112 0 6 chr12 70111891 70112053 -51145477 + B2_Mm2 SINE B2 1 161 -34 1 1119 243 0 0 0 chr12 70112053 70112080 -51145450 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1 1119 361 307 69 42 chr12 70113062 70113395 -51144135 - L1ME4a LINE L1 -251 5873 5532 1 1119 203 217 117 21 chr12 70113414 70113508 -51144022 + MIR SINE MIR 110 212 -50 1 1119 25 0 0 0 chr12 70113567 70113592 -51143938 + AT_rich Low_complexity Low_complexity 1 25 0 1 1119 801 203 7 39 chr12 70113600 70113698 -51143832 + B1_Mur2 SINE Alu 1 97 -52 1 1119 3680 97 11 56 chr12 70113698 70114234 -51143296 + RLTR1B LTR ERV1 1 512 0 1 1119 801 203 7 39 chr12 70114234 70114289 -51143241 + B1_Mur2 SINE Alu 98 149 0 1 1119 6898 55 19 0 chr12 70114312 70115105 -51142425 + RLTR13C2 LTR ERVK 1 808 0 1 1119 282 56 0 0 chr12 70115135 70115171 -51142359 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 1 1119 675 177 0 0 chr12 70115289 70115419 -51142111 + BC1_Mm scRNA scRNA 1 130 -22 1 1119 288 0 0 0 chr12 70115431 70115463 -51142067 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1119 1701 163 80 80 chr12 70115490 70115890 -51141640 - RMER1C Other Other -3 1339 940 1 1119 715 210 190 16 chr12 70115923 70116107 -51141423 + B3 SINE B2 1 216 0 1 1119 752 252 49 0 chr12 70116947 70117090 -51140440 - RSINE1 SINE B4 -13 152 3 1 1119 1261 48 0 7 chr12 70117204 70117350 -51140180 + B1_Mus2 SINE Alu 3 147 0 1 1119 304 269 13 13 chr12 70117363 70117442 -51140088 + RSINE1 SINE B4 87 165 0 1 1119 848 209 36 31 chr12 70118607 70118800 -51138730 - MTD LTR MaLR -30 389 196 1 1119 863 130 0 0 chr12 70118814 70118937 -51138593 - B1_Mus1 SINE Alu -25 123 1 1 1119 750 201 51 45 chr12 70118937 70119105 -51138425 - MTD LTR MaLR -215 204 36 1 1119 406 303 49 8 chr12 70119141 70119264 -51138266 - MIR SINE MIR -69 193 66 1 1119 431 247 72 46 chr12 70119342 70119495 -51138035 + RSINE1 SINE B4 3 159 -6 1 1119 21 0 0 0 chr12 70119507 70119528 -51138002 + AT_rich Low_complexity Low_complexity 1 21 0 1 1119 7954 88 34 8 chr12 70119642 70121560 -51135970 + L1_Mus3 LINE L1 4659 6632 -6 1 1119 522 191 11 0 chr12 70122393 70122487 -51135043 + PB1 SINE Alu 21 115 -12 1 1119 198 0 0 0 chr12 70122487 70122509 -51135021 + (T)n Simple_repeat Simple_repeat 1 22 0 1 139 9136 13 0 2 chr12 70122931 70124489 -51133041 - L1Md_T LINE L1 0 6582 5030 1 1120 475 192 58 0 chr12 70125338 70125458 -51132072 - Lx5 LINE L1 0 7050 6924 1 1120 1674 52 5 5 chr12 70125581 70125795 -51131735 - MTA_Mm LTR MaLR 0 396 183 1 1120 7384 110 29 4 chr12 70125798 70127537 -51129993 - L1_Mus4 LINE L1 0 6636 4871 1 1120 1557 62 0 0 chr12 70127537 70127732 -51129798 - MTA_Mm LTR MaLR -212 195 1 1 1120 186 230 128 46 chr12 70128567 70128677 -51128853 + MIRc SINE MIR 110 229 -39 1 1120 237 241 37 25 chr12 70128723 70128804 -51128726 + CT-rich Low_complexity Low_complexity 5 86 0 1 1120 1101 72 28 3 chr12 70128892 70129183 -51128347 + (CA)n Simple_repeat Simple_repeat 1 298 0 1 1120 1102 263 63 54 chr12 70129406 70129708 -51127822 + MTEa LTR MaLR 33 337 -42 1 1120 243 0 0 0 chr12 70129708 70129735 -51127795 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1120 1102 263 63 54 chr12 70129735 70129766 -51127764 + MTEa LTR MaLR 338 368 -11 1 1120 340 306 139 102 chr12 70130234 70130405 -51127125 + MLT1E2 LTR MaLR 1 192 -435 1 1120 1314 159 5 33 chr12 70130405 70130619 -51126911 + B3 SINE B2 3 210 -6 1 1120 340 306 139 102 chr12 70130619 70130800 -51126730 + MLT1E2 LTR MaLR 193 366 -261 1 1120 710 23 11 0 chr12 70130810 70130898 -51126632 + (TC)n Simple_repeat Simple_repeat 1 89 0 1 1120 345 252 98 29 chr12 70131267 70131369 -51126161 + PB1D10 SINE Alu 2 110 -7 1 1120 7860 82 30 4 chr12 70131457 70132454 -51125076 - RLTR13D5 LTR ERVK 0 1023 1 1 1120 357 259 141 0 chr12 70132558 70132643 -51124887 + PB1D10 SINE Alu 1 97 -20 1 1120 585 319 111 53 chr12 70134105 70134354 -51123176 + MLT1A1 LTR MaLR 11 278 -130 1 1120 817 266 26 21 chr12 70134354 70134518 -51123012 + B3A SINE B2 1 167 -31 1 1120 432 0 0 0 chr12 70134518 70134566 -51122964 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1120 817 266 26 21 chr12 70134566 70134593 -51122937 + B3A SINE B2 168 193 -5 1 1120 585 319 111 53 chr12 70134593 70134684 -51122846 + MLT1A1 LTR MaLR 279 371 -37 1 1120 471 278 23 31 chr12 70134702 70134832 -51122698 - MLT1A1 LTR MaLR -23 385 257 1 1120 200 301 0 52 chr12 70135489 70135566 -51121964 + MIRb SINE MIR 119 191 -77 1 1120 230 167 75 61 chr12 70136196 70136343 -51121187 + RMER17A LTR ERVK 340 488 -263 1 1120 192 398 88 16 chr12 70136498 70136623 -51120907 + MIR3 SINE MIR 44 177 -31 1 1120 375 23 0 0 chr12 70137596 70137640 -51119890 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1120 3974 71 29 2 chr12 70137786 70138296 -51119234 + L1_Mus3 LINE L1 6114 6637 -1 1 1120 1788 184 208 0 chr12 70138705 70139052 -51118478 + MTD LTR MaLR 1 419 0 1 1120 254 228 30 89 chr12 70139953 70140054 -51117476 + MIR SINE MIR 115 209 -59 1 1120 456 314 96 85 chr12 70140630 70140901 -51116629 + L2b LINE L2 3111 3384 -3 1 1120 813 222 164 19 chr12 70141275 70141537 -51115993 - RMER4B LTR ERVK -9 576 277 1 1120 1340 206 239 36 chr12 70141654 70142072 -51115458 - RMER4B LTR ERVK -9 576 74 1 1120 690 55 0 0 chr12 70142075 70142166 -51115364 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 1 1120 493 362 31 22 chr12 70142482 70142711 -51114819 + MIR SINE MIR 17 247 -15 1 1120 819 88 0 20 chr12 70142732 70142883 -51114647 + (GGTTG)n Simple_repeat Simple_repeat 1 148 0 1 1120 378 0 0 0 chr12 70143154 70143196 -51114334 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1120 1398 268 188 0 chr12 70143258 70143706 -51113824 - Lx8 LINE L1 -249 7224 6693 2 1120 714 242 28 11 chr12 70143721 70143959 -51113571 - Lx8 LINE L1 -376 5927 5659 2 1120 1437 276 71 30 chr12 70143938 70144515 -51113015 - Lx8 LINE L1 -1685 5788 5221 2 1120 556 14 14 0 chr12 70144515 70144584 -51112946 + B1_Mus2 SINE Alu 77 146 -1 2 1120 1724 176 25 20 chr12 70144544 70144921 -51112609 + MTC LTR MaLR 35 413 -8 2 1120 2190 302 66 98 chr12 70144935 70145997 -51111533 - Lx8 LINE L1 -898 5245 4245 2 1120 986 92 122 0 chr12 70145997 70146128 -51111402 - B1_Mus2 SINE Alu 0 147 1 2 1120 2190 302 66 98 chr12 70146128 70146506 -51111024 - Lx8 LINE L1 -1899 4244 3852 2 1120 518 189 0 10 chr12 70146510 70146606 -51110924 + MT2A LTR ERVL 1 95 -438 2 1120 9816 198 38 40 chr12 70146610 70146905 -51110625 - Lx7 LINE L1 -16 7680 7390 2 1120 219 69 0 0 chr12 70146905 70146934 -51110596 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1120 9816 181 40 30 chr12 70146934 70148975 -51108555 - Lx7 LINE L1 -307 7389 5324 2 1120 4240 151 91 53 chr12 70148975 70149841 -51107689 - RMER19B LTR ERVK -2 900 2 2 1120 8815 204 67 10 chr12 70149844 70151782 -51105748 - Lx7 LINE L1 -551 5326 3279 2 1120 324 253 11 21 chr12 70151858 70151951 -51105579 + (CATA)n Simple_repeat Simple_repeat 2 93 0 2 1120 221 169 17 0 chr12 70151951 70152010 -51105520 + GA-rich Low_complexity Low_complexity 2 61 0 2 1120 1059 237 21 33 chr12 70152538 70152778 -51104752 + B4 SINE B4 1 237 -55 2 1120 1655 256 30 2 chr12 70152856 70153251 -51104279 + Lx7 LINE L1 6833 7238 -458 2 1120 394 124 0 219 chr12 70153251 70153365 -51104165 - ORR1A4 LTR MaLR -164 165 77 2 1120 228 219 73 0 chr12 70153429 70153511 -51104019 + T-rich Low_complexity Low_complexity 3 90 0 2 1120 1882 117 62 86 chr12 70153548 70153885 -51103645 + ORR1A4 LTR MaLR 1 329 0 2 1120 55 0 0 0 chr12 70153955 70154010 -51103520 + AT_rich Low_complexity Low_complexity 1 55 0 2 1120 740 249 58 3 chr12 70154507 70154796 -51102734 + Lx9 LINE L1 7285 7620 -24 2 1120 451 214 0 0 chr12 70154810 70154880 -51102650 + ID4_ SINE ID 3 72 -11 2 1120 279 0 0 0 chr12 70155174 70155205 -51102325 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1120 33802 67 5 1 chr12 70155330 70158936 -51098594 + L1Md_F2 LINE L1 371 3985 -1898 2 1120 7775 52 9 0 chr12 70158936 70159821 -51097709 + RLTR13B1 LTR ERVK 1 893 0 2 1120 33802 68 5 2 chr12 70159821 70161413 -51096117 + L1Md_F2 LINE L1 3986 5586 -297 2 1120 9012 23 5 4 chr12 70161414 70162406 -51095124 + L1Md_F2 LINE L1 5588 6580 -2 2 1120 1109 72 0 42 chr12 70162428 70162572 -51094958 + B1_Mus1 SINE Alu 3 140 -8 2 1120 687 312 33 69 chr12 70163313 70163588 -51093942 + Lx8 LINE L1 6498 6762 -711 2 1120 944 313 68 59 chr12 70164084 70164230 -51093300 + Lx7 LINE L1 6769 6908 -788 2 1120 1654 43 21 0 chr12 70164230 70164418 -51093112 + B2_Mm1t SINE B2 2 193 0 2 1120 944 313 68 59 chr12 70164418 70164811 -51092719 + Lx7 LINE L1 6909 7313 -383 2 1120 193 328 33 35 chr12 70164961 70165124 -51092406 + MIR SINE MIR 86 252 -16 2 1120 180 0 0 0 chr12 70165303 70165323 -51092207 + (TTG)n Simple_repeat Simple_repeat 1 20 0 2 1120 397 280 43 50 chr12 70165871 70166010 -51091520 - MIR SINE MIR -24 238 101 2 1120 330 98 0 0 chr12 70166417 70166468 -51091062 + (TGG)n Simple_repeat Simple_repeat 2 52 0 2 1120 262 61 41 0 chr12 70166821 70166870 -51090660 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 1120 699 230 201 6 chr12 70166890 70167069 -51090461 - ID_B1 SINE B4 -6 218 5 2 1120 268 333 10 10 chr12 70167317 70167417 -51090113 + MLT1I LTR MaLR 281 380 -31 2 1120 1756 117 88 51 chr12 70167470 70167822 -51089708 - ORR1B1 LTR MaLR -27 367 3 2 1120 189 107 0 0 chr12 70168721 70168749 -51088781 + (ATGGTG)n Simple_repeat Simple_repeat 5 32 0 2 1120 267 79 0 0 chr12 70168750 70168788 -51088742 + (ATTG)n Simple_repeat Simple_repeat 3 40 0 2 1120 1334 212 81 66 chr12 70169853 70169914 -51087616 - RMER2 LTR ERV1 -167 400 345 2 1120 3504 28 2 0 chr12 70169914 70170309 -51087221 - MTA_Mm LTR MaLR 0 396 1 2 1120 1334 212 81 66 chr12 70170309 70170641 -51086889 - RMER2 LTR ERV1 -223 344 1 2 1120 1370 263 41 34 chr12 70171052 70171505 -51086025 - MuRRS4-int LTR ERV1 -1049 4014 3612 2 1120 313 217 14 0 chr12 70171937 70172006 -51085524 + ID4_ SINE ID 4 73 -10 2 1120 217 360 87 18 chr12 70172054 70172283 -51085247 + L2 LINE L2 2641 2885 -534 2 1120 1504 48 0 65 chr12 70172505 70172704 -51084826 - B2_Mm1a SINE B2 -6 187 2 2 1120 1096 73 0 0 chr12 70173766 70173902 -51083628 - B1_Mus2 SINE Alu -10 137 2 2 1120 2507 54 0 51 chr12 70174062 70174244 -51083286 + L1_Mus1 LINE L1 6253 6426 -141 2 1120 1205 61 0 0 chr12 70174244 70174391 -51083139 - B1_Mm SINE Alu 0 147 1 2 1120 2507 54 0 51 chr12 70174391 70174540 -51082990 + L1_Mus1 LINE L1 6427 6567 0 2 1120 657 246 0 15 chr12 70174727 70174863 -51082667 + B3 SINE B2 1 134 -82 2 1120 4568 173 63 111 chr12 70174863 70176006 -51081524 - Lx9 LINE L1 -9 7635 6548 2 1120 296 264 0 0 chr12 70176010 70176082 -51081448 + B3 SINE B2 124 195 -21 2 1120 523 283 126 16 chr12 70176227 70176410 -51081120 + B3 SINE B2 1 203 -13 2 1120 1627 11 6 0 chr12 70177549 70177729 -51079801 + B2_Mm1t SINE B2 2 182 -11 2 1120 780 11 0 0 chr12 70177729 70177818 -51079712 + (GGAAA)n Simple_repeat Simple_repeat 3 91 0 2 1120 1030 65 23 23 chr12 70178070 70178244 -51079286 + (TTCTCC)n Simple_repeat Simple_repeat 2 175 0 2 1120 1064 200 24 0 chr12 70178252 70178462 -51079068 - B3 SINE B2 0 216 2 2 1120 3419 33 5 0 chr12 70178613 70179007 -51078523 - MTA_Mm LTR MaLR 0 396 1 2 1120 447 303 94 87 chr12 70179813 70180250 -51077280 + LTR37B LTR ERV1 29 468 0 2 1120 684 162 41 27 chr12 70180921 70181067 -51076463 + B1_Mur4 SINE Alu 3 150 0 2 1120 22 0 0 0 chr12 70181067 70181089 -51076441 + AT_rich Low_complexity Low_complexity 1 22 0 2 1120 216 178 0 0 chr12 70181744 70181789 -51075741 + T-rich Low_complexity Low_complexity 2 46 0 2 1120 533 220 105 8 chr12 70181795 70181928 -51075602 - B1_Mus1 SINE Alu 0 148 3 2 1120 408 40 0 0 chr12 70182048 70182098 -51075432 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1120 276 170 0 0 chr12 70182377 70182430 -51075100 + CT-rich Low_complexity Low_complexity 4 56 0 2 1120 210 91 0 0 chr12 70183465 70183498 -51074032 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1120 261 0 0 0 chr12 70183508 70183537 -51073993 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1120 294 268 120 32 chr12 70183811 70183969 -51073561 - MER58A DNA MER1_type -21 203 32 2 1120 918 221 71 39 chr12 70184223 70184505 -51073025 - Lx9 LINE L1 -2 7642 7352 2 1120 351 0 0 0 chr12 70185231 70185270 -51072260 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1120 438 254 36 0 chr12 70185468 70185606 -51071924 + RMER15 LTR ERVL 417 559 -16 2 1120 23 0 0 0 chr12 70186102 70186125 -51071405 + AT_rich Low_complexity Low_complexity 1 23 0 2 1120 279 0 0 0 chr12 70187997 70188028 -51069502 + (TAA)n Simple_repeat Simple_repeat 1 31 0 2 1120 831 70 211 0 chr12 70188160 70188302 -51069228 - B2_Mm2 SINE B2 -22 173 2 2 1120 180 0 0 0 chr12 70188337 70188357 -51069173 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 2 1120 249 255 0 0 chr12 70188719 70188770 -51068760 + (CGTG)n Simple_repeat Simple_repeat 2 52 0 2 1120 480 270 78 92 chr12 70188786 70189068 -51068462 - B4A SINE B4 -12 280 3 2 1120 328 346 47 8 chr12 70189514 70189642 -51067888 + RSINE1 SINE B4 33 165 0 2 1120 414 221 0 0 chr12 70189643 70189738 -51067792 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1120 457 259 110 9 chr12 70189812 70189921 -51067609 + B1F SINE Alu 1 120 -29 2 1120 2850 161 76 66 chr12 70190094 70190699 -51066831 + RMER19C LTR ERVK 1 611 0 2 1120 1189 68 0 0 chr12 70190815 70190962 -51066568 + B1_Mus2 SINE Alu 1 147 0 2 1120 190 338 76 21 chr12 70191112 70191257 -51066273 - L2c LINE L2 -68 3319 3167 2 1120 1509 189 44 52 chr12 70192347 70192732 -51064798 + ORR1C2 LTR MaLR 1 382 -2 2 1120 1975 169 30 17 chr12 70192877 70193239 -51064291 - ORR1B2 LTR MaLR 0 367 1 2 1120 699 156 0 0 chr12 70193451 70193573 -51063957 + (TG)n Simple_repeat Simple_repeat 1 122 0 2 1120 348 294 184 0 chr12 70194325 70194461 -51063069 + ID_B1 SINE B4 57 217 -7 2 1120 356 72 0 18 chr12 70194966 70195023 -51062507 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 2 1120 279 0 0 0 chr12 70195251 70195282 -51062248 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2 1120 241 250 61 24 chr12 70195566 70195648 -51061882 - Charlie22a DNA MER1_type -299 192 108 2 1120 207 311 0 28 chr12 70196155 70196261 -51061269 + G-rich Low_complexity Low_complexity 3 105 0 2 1120 255 31 0 0 chr12 70196517 70196549 -51060981 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1120 258 278 38 85 chr12 70196944 70197050 -51060480 + RSINE1 SINE B4 5 105 -60 2 1120 1067 129 0 0 chr12 70197087 70197258 -51060272 + B2_Mm2 SINE B2 2 172 -23 2 1120 2511 195 83 5 chr12 70198350 70198917 -51058613 - Lx9 LINE L1 0 7644 7034 2 1120 326 324 27 0 chr12 70199288 70199399 -51058131 + RSINE1 SINE B4 12 125 -40 2 1120 252 0 0 0 chr12 70199399 70199427 -51058103 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1120 1095 252 55 16 chr12 70199467 70199774 -51057756 - MTE2b LTR MaLR -59 320 2 2 1120 909 117 0 31 chr12 70199821 70199980 -51057550 - Lx LINE L1 -30 6624 6471 2 1120 887 224 55 21 chr12 70199980 70200217 -51057313 - MTE-int LTR MaLR -66 1514 1270 2 1120 1051 227 58 23 chr12 70200213 70200470 -51057060 + B4A SINE B4 27 292 0 2 1120 1205 68 0 0 chr12 70200705 70200852 -51056678 + B1_Mus1 SINE Alu 2 148 0 2 1120 1128 128 0 0 chr12 70200852 70201031 -51056499 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 1120 182 37 0 36 chr12 70201104 70201132 -51056398 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1120 210 91 0 0 chr12 70201137 70201170 -51056360 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1120 204 137 0 89 chr12 70201690 70201746 -51055784 + T-rich Low_complexity Low_complexity 6 56 0 3 1120 852 159 28 35 chr12 70201770 70201913 -51055617 - B1_Mur4 SINE Alu -8 142 1 3 1120 292 231 31 0 chr12 70201993 70202058 -51055472 + tRNA-Ala-GCY_ tRNA tRNA 6 72 -3 3 1120 776 254 69 5 chr12 70202238 70202440 -51055090 - B3 SINE B2 0 216 2 3 1120 742 273 66 0 chr12 70202463 70202661 -51054869 - B3 SINE B2 -5 211 1 3 1120 289 312 0 0 chr12 70203312 70203392 -51054138 + MLT2B2 LTR ERVL 22 101 -414 3 1120 624 200 80 0 chr12 70203421 70203546 -51053984 + B1_Mur2 SINE Alu 6 140 -9 3 1120 180 0 0 0 chr12 70203546 70203566 -51053964 + (ATG)n Simple_repeat Simple_repeat 3 22 0 3 1120 307 293 0 12 chr12 70203631 70203714 -51053816 + ID4 SINE ID 1 82 -1 3 1120 209 122 24 0 chr12 70204459 70204500 -51053030 + (TTTTTG)n Simple_repeat Simple_repeat 4 45 0 3 1120 279 259 135 14 chr12 70204934 70205075 -51052455 + MIR SINE MIR 35 192 -70 3 1120 293 313 114 0 chr12 70205154 70205264 -51052266 + L1MC LINE L1 5522 5645 -549 3 1120 288 0 0 0 chr12 70205979 70206011 -51051519 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1120 1009 234 5 0 chr12 70206039 70206244 -51051286 + B3 SINE B2 1 206 -10 3 1120 538 154 192 0 chr12 70206448 70206552 -51050978 + B1_Mur4 SINE Alu 16 139 -11 3 1120 180 0 0 0 chr12 70206552 70206572 -51050958 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1120 10818 94 2 30 chr12 70206572 70208979 -51048551 + L1_Mus3 LINE L1 4304 6632 -6 3 1120 331 265 0 0 chr12 70209294 70209377 -51048153 - Lx8 LINE L1 -359 7114 7032 3 1120 534 267 58 39 chr12 70209382 70209538 -51047992 - Lx8 LINE L1 -599 6874 6716 3 1120 1728 236 50 26 chr12 70209543 70209961 -51047569 - Lx8 LINE L1 -862 6611 6184 3 1120 654 244 1 3 chr12 70209966 70210117 -51047413 + B1F2 SINE Alu 1 149 0 3 1120 913 239 55 23 chr12 70210393 70210650 -51046880 - Lx7 LINE L1 -1805 5891 5627 3 1120 1088 218 94 8 chr12 70210906 70211160 -51046370 - B4A SINE B4 -12 280 5 3 1120 265 328 24 0 chr12 70211885 70212010 -51045520 + (TA)n Simple_repeat Simple_repeat 2 129 0 3 1120 295 245 32 20 chr12 70212010 70212120 -51045410 - MLT1G1 LTR MaLR -341 238 113 3 1120 1188 127 5 41 chr12 70212215 70212412 -51045118 + B2_Mm2 SINE B2 2 191 -4 3 1120 219 171 0 24 chr12 70212453 70212495 -51045035 + GA-rich Low_complexity Low_complexity 4 44 0 3 1120 220 304 125 23 chr12 70212767 70212895 -51044635 + MIR3 SINE MIR 37 177 -31 3 1120 322 306 96 45 chr12 70213567 70213745 -51043785 + MIR SINE MIR 50 236 -26 3 1120 2057 133 124 14 chr12 70214149 70214577 -51042953 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1120 256 188 275 0 chr12 70215663 70215695 -51041835 - MT2B LTR ERVL -7 594 541 3 1120 950 73 11 33 chr12 70215695 70215879 -51041651 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1120 256 188 275 0 chr12 70215879 70215926 -51041604 - MT2B LTR ERVL -61 540 494 3 1120 1707 124 61 124 chr12 70215926 70216005 -51041525 - ORR1B1 LTR MaLR 0 394 340 3 1120 690 196 7 0 chr12 70216005 70216148 -51041382 - Lx5 LINE L1 -3 7047 6904 3 1120 1707 124 61 124 chr12 70216148 70216446 -51041084 - ORR1B1 LTR MaLR -55 339 41 3 1120 1115 204 192 70 chr12 70216453 70216895 -51040635 - MT2B LTR ERVL -104 497 2 3 1120 1481 262 45 5 chr12 70217035 70217411 -51040119 + Lx8 LINE L1 6461 6851 -622 3 1120 303 161 0 0 chr12 70217421 70217477 -51040053 + (CTG)n Simple_repeat Simple_repeat 1 56 0 3 1120 641 224 57 34 chr12 70217477 70217653 -51039877 + Lx8 LINE L1 6854 7033 -440 3 1120 238 191 29 14 chr12 70217657 70217726 -51039804 - Lx8 LINE L1 -406 7067 6998 3 1120 221 255 0 0 chr12 70217734 70217785 -51039745 + RSINE1 SINE B4 1 51 -114 3 1120 440 238 181 8 chr12 70218035 70218162 -51039368 + B1_Mur1 SINE Alu 1 149 0 3 1120 1104 96 0 0 chr12 70219866 70220012 -51037518 + B1_Mus1 SINE Alu 3 148 0 3 1120 31 58 0 0 chr12 70220925 70220977 -51036553 + AT_rich Low_complexity Low_complexity 1 52 0 3 1120 3039 139 50 17 chr12 70221024 70221601 -51035929 + RLTR17 LTR ERVK 1 596 -96 3 1120 738 169 15 0 chr12 70221669 70221799 -51035731 + B1_Mur3 SINE Alu 17 148 -1 3 1120 524 245 27 27 chr12 70221811 70221958 -51035572 + L1MA4A LINE L1 5639 5785 -515 3 1120 694 309 0 16 chr12 70221959 70222143 -51035387 + B3A SINE B2 1 181 -17 3 1120 476 299 18 0 chr12 70222202 70222366 -51035164 + L1MA4A LINE L1 5770 5936 -367 3 1120 451 262 66 0 chr12 70222566 70222688 -51034842 - MLT1A0 LTR MaLR 0 365 236 3 1120 418 276 9 0 chr12 70222779 70222884 -51034646 - PB1D10 SINE Alu 0 117 12 3 1120 1207 68 0 0 chr12 70222974 70223121 -51034409 + B1_Mus1 SINE Alu 2 148 0 3 1120 260 322 103 17 chr12 70223863 70223980 -51033550 + RSINE1 SINE B4 3 129 -36 3 1120 375 23 0 0 chr12 70224997 70225041 -51032489 + (CATA)n Simple_repeat Simple_repeat 4 47 0 3 1120 1210 62 0 0 chr12 70225384 70225530 -51032000 + B1_Mus2 SINE Alu 2 147 0 3 1120 186 43 0 0 chr12 70225828 70225851 -51031679 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3 1120 280 294 42 7 chr12 70226045 70226171 -51031359 + MIR SINE MIR 14 144 -124 3 1120 1352 169 72 52 chr12 70226332 70226638 -51030892 - RMER1C Other Other -8 1334 1023 3 1120 1275 238 104 3 chr12 70226911 70227248 -51030282 + L1MCa LINE L1 34 404 -6104 3 1120 602 163 39 39 chr12 70227302 70227430 -51030100 + B1_Mur2 SINE Alu 3 130 -19 3 1120 573 206 200 0 chr12 70227443 70227603 -51029927 + L1MCa LINE L1 534 725 -5783 3 1120 441 312 111 60 chr12 70227603 70227820 -51029710 - ORR1E LTR MaLR -6 353 129 3 1120 964 119 34 20 chr12 70227820 70227966 -51029564 + B1_Mur3 SINE Alu 2 149 0 3 1120 441 312 111 60 chr12 70227966 70228082 -51029448 - ORR1E LTR MaLR -231 128 3 3 1120 347 0 0 23 chr12 70228148 70228192 -51029338 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 3 1120 844 176 0 27 chr12 70228205 70228351 -51029179 - B1_Mur2 SINE Alu -6 143 2 3 1120 721 253 123 49 chr12 70228809 70229175 -51028355 + L1MCa LINE L1 768 1160 -5348 3 1120 879 127 95 18 chr12 70229772 70229940 -51027590 + B2_Mm2 SINE B2 1 181 -14 3 1120 1136 69 125 0 chr12 70229972 70230132 -51027398 + B2_Mm1t SINE B2 2 181 -12 3 1120 345 88 275 9 chr12 70230161 70230273 -51027257 + B2_Mm2 SINE B2 46 192 -3 3 1120 189 0 0 0 chr12 70230943 70230964 -51026566 + (G)n Simple_repeat Simple_repeat 1 21 0 3 1120 198 304 125 12 chr12 70231559 70231639 -51025891 + MIRc SINE MIR 80 168 -100 3 1120 1079 259 103 14 chr12 70231648 70231996 -51025534 - MTEa LTR MaLR 0 379 1 3 1120 407 292 17 26 chr12 70232466 70232582 -51024948 - PB1D7 SINE Alu -4 116 2 3 1120 391 130 42 9 chr12 70232649 70232727 -51024803 - PB1D9 SINE Alu -36 113 40 3 1120 274 292 47 92 chr12 70232990 70233316 -51024214 + MLT1A1 LTR MaLR 46 396 -12 3 1120 343 294 55 0 chr12 70233546 70233655 -51023875 + PB1D10 SINE Alu 3 117 0 3 1120 1594 248 38 21 chr12 70233665 70234086 -51023444 + Lx6 LINE L1 7011 7438 -22 3 1120 300 53 0 0 chr12 70234086 70234124 -51023406 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1120 279 133 0 0 chr12 70234115 70234160 -51023370 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1120 251 339 78 8 chr12 70234623 70234751 -51022779 + MLT1B LTR MaLR 21 157 -233 3 1120 232 270 13 39 chr12 70234775 70234795 -51022735 + polypyrimidine Low_complexity Low_complexity 59 78 0 3 1120 396 0 0 0 chr12 70234795 70234839 -51022691 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1120 232 270 13 39 chr12 70234839 70234895 -51022635 + polypyrimidine Low_complexity Low_complexity 4 58 0 3 1120 186 133 0 0 chr12 70234929 70234959 -51022571 + (CTG)n Simple_repeat Simple_repeat 1 30 0 3 1120 572 194 0 10 chr12 70234959 70235063 -51022467 - PB1D10 SINE Alu -12 105 3 3 1120 802 237 15 25 chr12 70235104 70235307 -51022223 + MLT1B LTR MaLR 190 390 0 3 1120 205 130 0 80 chr12 70235350 70235400 -51022130 + (CAGAGA)n Simple_repeat Simple_repeat 6 51 0 3 1120 306 125 0 0 chr12 70235483 70235531 -51021999 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1120 440 268 73 0 chr12 70235532 70235655 -51021875 - RSINE1 SINE B4 -32 133 2 3 1120 182 65 0 61 chr12 70235846 70235854 -51021676 + (GAAA)n Simple_repeat Simple_repeat 4 10 0 3 1120 1118 61 0 39 chr12 70235854 70236007 -51021523 + B1_Mus1 SINE Alu 2 148 0 3 1120 182 65 0 61 chr12 70236007 70236031 -51021499 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 3 1120 349 369 45 6 chr12 70236401 70236578 -51020952 - MER21B LTR ERV1 -199 664 481 3 1120 3366 23 29 0 chr12 70236809 70237194 -51020336 + MTA_Mm LTR MaLR 1 396 0 3 1120 692 150 7 76 chr12 70237204 70237363 -51020167 + B1_Mur4 SINE Alu 1 150 0 3 1120 591 245 7 34 chr12 70237484 70237685 -51019845 + B3A SINE B2 3 189 -27 3 1120 383 332 70 0 chr12 70237741 70237925 -51019605 - MER21B LTR ERV1 -591 272 76 3 1120 645 176 84 0 chr12 70237925 70238044 -51019486 + B3 SINE B2 2 130 -86 3 1120 1365 74 11 0 chr12 70238081 70238257 -51019273 + B2_Mm1t SINE B2 2 179 -14 3 1120 416 106 310 26 chr12 70238294 70238410 -51019120 + B2_Mm2 SINE B2 47 195 0 3 1120 271 300 62 0 chr12 70238457 70238537 -51018993 - MER21B LTR ERV1 -767 96 12 3 1120 21 36 0 0 chr12 70238537 70238565 -51018965 + AT_rich Low_complexity Low_complexity 1 28 0 3 1120 1458 80 16 0 chr12 70238572 70238760 -51018770 - B2_Mm2 SINE B2 -3 192 2 3 1120 281 225 52 11 chr12 70239085 70239177 -51018353 + PB1D10 SINE Alu 9 103 -14 3 1120 1247 89 50 11 chr12 70239271 70239452 -51018078 - B2_Mm2 SINE B2 -7 188 1 3 1120 285 98 0 0 chr12 70239456 70239497 -51018033 + (TCC)n Simple_repeat Simple_repeat 3 43 0 3 1120 210 37 0 0 chr12 70239506 70239533 -51017997 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1120 967 84 0 20 chr12 70239538 70239684 -51017846 - B1_Mus2 SINE Alu 0 147 5 3 1120 1525 73 0 0 chr12 70239688 70239880 -51017650 - B2_Mm1t SINE B2 -1 192 1 3 1120 1089 70 0 14 chr12 70240017 70240162 -51017368 + B1_Mm SINE Alu 1 143 -4 3 1120 234 0 0 0 chr12 70240162 70240188 -51017342 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4 1120 498 14 42 0 chr12 70240252 70240323 -51017207 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1120 4067 159 75 110 chr12 70240865 70241805 -51015725 + RMER1B Other Other 159 1066 0 4 1120 231 61 0 0 chr12 70241812 70241845 -51015685 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1120 277 276 95 22 chr12 70241887 70242024 -51015506 + LTR37A LTR ERV1 26 172 -254 4 1120 821 295 39 16 chr12 70242064 70242371 -51015159 - MER31A LTR ERV1 -1 484 171 4 1120 263 253 24 24 chr12 70243150 70243166 -51014364 - B4A SINE B4 -121 171 87 4 1120 342 174 14 0 chr12 70243166 70243235 -51014295 - B1_Mus1 SINE Alu -77 71 2 4 1120 317 244 21 53 chr12 70243305 70243400 -51014130 + L1M5 LINE L1 5040 5131 -1015 4 1120 442 216 179 43 chr12 70243488 70243628 -51013902 + RSINE1 SINE B4 3 161 -4 4 1120 23 54 0 0 chr12 70243758 70243795 -51013735 + AT_rich Low_complexity Low_complexity 1 37 0 4 1120 308 304 0 12 chr12 70243795 70243875 -51013655 + ID4 SINE ID 5 83 0 4 1120 474 198 5 56 chr12 70245130 70245257 -51012273 + B1_Mur2 SINE Alu 1 119 -1 4 1120 309 319 250 63 chr12 70245317 70245686 -51011844 + MER21B LTR ERV1 273 710 -153 4 1120 1934 128 9 19 chr12 70246051 70246432 -51011098 - RLTR31B_Mm LTR ERVK 0 557 1 4 1120 1919 174 5 39 chr12 70246436 70246820 -51010710 - RLTR14 LTR ERV1 0 382 12 4 1120 375 73 0 0 chr12 70247467 70247522 -51010008 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 4 1120 5193 119 63 22 chr12 70247525 70248520 -51009010 - ORR1A3-int LTR MaLR -210 1753 718 4 1120 616 139 80 111 chr12 70248479 70248575 -51008955 - MT2B LTR ERVL -314 287 196 4 1120 1235 41 0 0 chr12 70248575 70248720 -51008810 + B1_Mm SINE Alu 2 146 -1 4 1120 366 23 0 0 chr12 70248728 70248771 -51008759 + (TAAAA)n Simple_repeat Simple_repeat 5 47 0 4 1120 1485 54 27 0 chr12 70248771 70248931 -51008599 + B2_Mm1t SINE B2 1 160 -33 4 1120 282 87 0 0 chr12 70248931 70248977 -51008553 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 1120 1485 54 27 0 chr12 70248977 70249001 -51008529 + B2_Mm1t SINE B2 161 189 -4 4 1120 616 139 80 111 chr12 70249001 70249056 -51008474 - MT2B LTR ERVL -414 187 133 4 1120 390 111 0 0 chr12 70249006 70249069 -51008461 - ORR1A3-int LTR MaLR -1219 744 682 4 1120 1075 80 12 4 chr12 70249113 70249294 -51008236 - ORR1A3-int LTR MaLR -629 1334 1171 4 1120 633 61 0 0 chr12 70249517 70249599 -51007931 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 4 1120 204 318 172 0 chr12 70249694 70249845 -51007685 + MIRc SINE MIR 77 253 -15 4 1120 749 184 0 52 chr12 70249964 70250119 -51007411 - B1_Mur1 SINE Alu -1 148 2 4 1120 711 214 0 0 chr12 70250387 70250518 -51007012 + B1F SINE Alu 16 146 -3 4 1120 304 231 67 109 chr12 70250389 70250554 -51006976 + B4A SINE B4 103 260 -32 4 1120 204 40 0 0 chr12 70251405 70251430 -51006100 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1120 346 127 16 0 chr12 70251430 70251493 -51006037 + MT2C_Mm LTR ERVL 286 349 -126 4 1120 806 159 0 0 chr12 70251606 70251744 -51005786 + ORR1A2 LTR MaLR 132 269 -58 4 1120 197 108 27 0 chr12 70251748 70251785 -51005745 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1120 1319 152 4 18 chr12 70252081 70252309 -51005221 - URR1B DNA MER1_type 0 225 1 4 1120 3611 39 108 58 chr12 70252596 70252745 -51004785 - L1_Mus1 LINE L1 0 6567 6426 4 1120 1217 41 0 0 chr12 70252745 70252892 -51004638 + B1_Mm SINE Alu 1 147 0 4 1120 3611 39 108 58 chr12 70252892 70253260 -51004270 - L1_Mus1 LINE L1 -142 6425 6024 4 1120 782 77 29 0 chr12 70253260 70253364 -51004166 - U6 snRNA snRNA 0 107 1 4 1120 243 258 145 0 chr12 70253437 70253499 -51004031 + ID SINE ID 2 72 -152 4 1120 402 258 31 10 chr12 70253511 70253609 -51003921 + ID_B1 SINE B4 121 220 -4 4 1120 1172 181 42 0 chr12 70253748 70253964 -51003566 + Lx9 LINE L1 6898 7122 -522 4 1120 21 0 0 0 chr12 70254059 70254080 -51003450 + AT_rich Low_complexity Low_complexity 1 21 0 4 17 1218 54 0 0 chr12 70254463 70254610 -51002920 + B1_Mm SINE Alu 1 147 0 4 1121 1136 243 78 20 chr12 70255008 70255352 -51002178 + MTE2b LTR MaLR 16 379 0 4 1121 631 188 118 15 chr12 70255402 70255537 -51001993 + B1_Mur2 SINE Alu 1 149 0 4 1121 648 240 27 0 chr12 70255640 70255786 -51001744 + B3 SINE B2 1 150 -66 4 1121 459 0 0 0 chr12 70255854 70255905 -51001625 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1121 478 254 64 58 chr12 70255907 70256095 -51001435 + B3A SINE B2 9 197 -1 4 1121 1274 192 63 0 chr12 70256337 70256576 -51000954 + Lx6 LINE L1 6917 7170 -290 4 1121 392 167 147 0 chr12 70256590 70256692 -51000838 + Lx6 LINE L1 7336 7452 -8 4 1121 884 150 13 13 chr12 70256721 70256870 -51000660 - B1_Mur3 SINE Alu 0 149 1 4 1121 225 164 56 56 chr12 70257188 70257259 -51000271 + MLT1A0 LTR MaLR 15 85 -280 4 1121 323 189 40 0 chr12 70257731 70257805 -50999725 - ID_B1 SINE B4 -33 191 115 4 1121 511 124 56 0 chr12 70257968 70258057 -50999473 + B2_Mm2 SINE B2 10 103 -92 4 1121 305 234 126 0 chr12 70258167 70258278 -50999252 - ID_B1 SINE B4 -19 205 81 4 1121 245 154 346 0 chr12 70259176 70259254 -50998276 + PB1D7 SINE Alu 1 105 -15 4 1121 2602 20 0 0 chr12 70260281 70260581 -50996949 + 7SLRNA srpRNA srpRNA 1 300 -14 4 1121 41 0 0 0 chr12 70261150 70261191 -50996339 + AT_rich Low_complexity Low_complexity 1 41 0 4 1121 348 167 0 0 chr12 70261442 70261514 -50996016 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1121 1446 71 11 0 chr12 70261894 70262078 -50995452 + B2_Mm1t SINE B2 1 186 -7 4 1121 222 283 30 50 chr12 70262206 70262300 -50995230 - ID2 SINE ID -62 90 6 4 1121 392 233 23 0 chr12 70262396 70262482 -50995048 + PB1D9 SINE Alu 25 112 -8 4 1121 554 171 53 67 chr12 70262563 70262713 -50994817 + B1_Mur1 SINE Alu 2 149 0 4 1121 340 247 145 65 chr12 70262862 70263048 -50994482 - Ricksha_c DNA MuDR -1133 915 715 4 1121 807 151 14 14 chr12 70263233 70263374 -50994156 - B1_Mur4 SINE Alu 0 150 10 4 1121 236 178 22 0 chr12 70263387 70263432 -50994098 - MLT2B5 LTR ERVL -671 46 1 4 1121 31 26 0 0 chr12 70263507 70263545 -50993985 + AT_rich Low_complexity Low_complexity 1 38 0 4 1121 844 166 128 5 chr12 70263620 70263808 -50993722 - RMER16 LTR ERVK 0 533 323 4 1121 820 46 0 0 chr12 70263816 70263925 -50993605 + B1_Mus2 SINE Alu 30 138 -9 4 1121 287 65 22 0 chr12 70263925 70263971 -50993559 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1121 338 139 47 110 chr12 70263973 70264099 -50993431 - RMER16 LTR ERVK -242 291 198 4 1121 1464 275 111 53 chr12 70264163 70264763 -50992767 - Lx9 LINE L1 -179 7465 6820 4 1121 6504 51 24 0 chr12 70264763 70265552 -50991978 - RLTR13C2 LTR ERVK 0 808 1 4 1121 1464 275 111 53 chr12 70265552 70265643 -50991887 - Lx9 LINE L1 -825 6819 6734 4 1121 2223 143 56 79 chr12 70266366 70266475 -50991055 - RMER4A LTR ERVK -10 456 358 4 1121 465 50 0 0 chr12 70266475 70266535 -50990995 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1121 2223 140 40 86 chr12 70266535 70266855 -50990675 - RMER4A LTR ERVK -109 357 49 4 1121 795 177 43 27 chr12 70266855 70267041 -50990489 - B2_Mm2 SINE B2 -5 190 2 4 1121 2223 140 40 86 chr12 70267041 70267056 -50990474 - RMER4A LTR ERVK -418 48 37 4 1121 1065 96 0 20 chr12 70267056 70267205 -50990325 - B1_Mus1 SINE Alu -1 147 2 4 1121 2223 140 40 86 chr12 70267205 70267251 -50990279 - RMER4A LTR ERVK -430 36 2 4 1121 493 161 12 0 chr12 70267653 70267734 -50989796 + B1_Mur3 SINE Alu 2 83 -66 4 1121 1692 31 0 0 chr12 70268097 70268289 -50989241 - B2_Mm1a SINE B2 0 193 2 4 1121 1159 75 0 0 chr12 70268433 70268580 -50988950 + B1_Mus1 SINE Alu 2 148 0 4 1121 246 192 0 0 chr12 70269013 70269065 -50988465 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 4 1121 458 89 233 19 chr12 70269159 70269262 -50988268 - Lx4A LINE L1 0 7058 6934 4 1121 1161 75 0 0 chr12 70270547 70270694 -50986836 - B1_Mus2 SINE Alu 0 147 1 4 1121 440 278 53 101 chr12 70270824 70271032 -50986498 - ID_B1 SINE B4 -25 199 2 4 1121 580 202 23 68 chr12 70271176 70271309 -50986221 - B1_Mur1 SINE Alu -10 139 13 4 1121 189 0 0 0 chr12 70271322 70271343 -50986187 + (TTG)n Simple_repeat Simple_repeat 2 22 0 4 1121 556 215 68 23 chr12 70271343 70271476 -50986054 - B1_Mur2 SINE Alu -10 139 1 4 1121 348 158 0 0 chr12 70271546 70271622 -50985908 + T-rich Low_complexity Low_complexity 1 76 0 4 1121 841 110 6 151 chr12 70271622 70271794 -50985736 - B1_Mus1 SINE Alu 0 148 2 4 1121 1012 64 14 0 chr12 70272131 70272271 -50985259 - B1_Mus1 SINE Alu -1 147 6 4 1121 183 42 0 0 chr12 70272680 70272704 -50984826 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1121 481 322 7 7 chr12 70272978 70273122 -50984408 + B1F2 SINE Alu 1 144 -5 4 1121 361 136 15 0 chr12 70273208 70273274 -50984256 - RLTR20C LTR ERVK -96 482 416 4 1121 1176 159 71 68 chr12 70273266 70273577 -50983953 - RLTR20C LTR ERVK -222 312 1 4 1121 944 161 73 44 chr12 70273579 70273755 -50983775 - MYSERV16_I-int LTR ERVK -2 2324 2144 4 1121 1074 58 0 55 chr12 70273755 70273900 -50983630 + B1_Mm SINE Alu 1 137 -10 4 1121 216 0 0 0 chr12 70273900 70273924 -50983606 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1121 944 161 73 44 chr12 70273924 70274018 -50983512 - MYSERV16_I-int LTR ERVK -183 2143 2046 4 1121 908 102 0 125 chr12 70274020 70274034 -50983496 - B1_Mus1 SINE Alu -1 147 136 4 1121 242 29 29 0 chr12 70274034 70274069 -50983461 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1121 908 102 0 125 chr12 70274069 70274222 -50983308 - B1_Mus1 SINE Alu -13 135 1 4 1121 1231 91 42 21 chr12 70274226 70274417 -50983113 - B2_Mm2 SINE B2 0 195 1 4 1121 442 132 15 0 chr12 70274417 70274485 -50983045 - MYSERV16_I-int LTR ERVK -427 1899 1831 4 1121 344 238 98 10 chr12 70274524 70274626 -50982904 - PB1D7 SINE Alu -1 119 9 4 1121 776 228 31 77 chr12 70274718 70274979 -50982551 - ORR1C2 LTR MaLR -4 380 132 4 1121 495 265 11 95 chr12 70274988 70275031 -50982499 - RSINE1 SINE B4 0 165 136 4 1121 351 0 0 0 chr12 70275031 70275070 -50982460 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1121 495 265 11 95 chr12 70275070 70275205 -50982325 - RSINE1 SINE B4 -30 135 2 4 1121 480 250 39 8 chr12 70276214 70276343 -50981187 - RSINE1 SINE B4 -11 154 22 4 1121 639 168 18 0 chr12 70276432 70276545 -50980985 + B1_Mur4 SINE Alu 2 116 -34 4 1121 234 283 169 15 chr12 70276608 70276808 -50980722 + MIR SINE MIR 2 245 -23 4 1121 1015 261 109 31 chr12 70276975 70277334 -50980196 + MTD LTR MaLR 18 404 -15 5 1121 1072 104 7 0 chr12 70277398 70277542 -50979988 - B1_Mus2 SINE Alu 0 147 3 5 1121 746 310 39 0 chr12 70277597 70277852 -50979678 - B4 SINE B4 -27 265 1 5 1121 264 303 15 0 chr12 70277880 70277946 -50979584 - PB1D10 SINE Alu -9 108 42 5 1121 988 106 19 0 chr12 70277963 70278123 -50979407 - B2_Mm2 SINE B2 -1 194 32 5 1121 1656 37 0 0 chr12 70278160 70278351 -50979179 - B2_Mm1a SINE B2 -2 191 1 5 1121 308 260 27 0 chr12 70278438 70278511 -50979019 - PB1D10 SINE Alu -33 84 10 5 1121 2536 77 284 2 chr12 70278636 70279041 -50978489 - MURVY-LTR LTR ERV1 0 519 1 5 1121 212 77 0 25 chr12 70279083 70279123 -50978407 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1121 524 184 158 0 chr12 70279237 70279351 -50978179 - B1_Mur3 SINE Alu 0 149 18 5 1121 1123 58 0 0 chr12 70279376 70279514 -50978016 + B1_Mus1 SINE Alu 1 138 -10 5 1121 390 198 174 32 chr12 70280001 70280156 -50977374 + B3 SINE B2 13 193 -23 5 1121 877 50 25 0 chr12 70280231 70280350 -50977180 + B2_Mm2 SINE B2 2 123 -72 5 1121 513 0 0 0 chr12 70280358 70280415 -50977115 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1121 363 44 0 0 chr12 70280415 70280459 -50977071 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1121 1053 130 309 26 chr12 70280496 70280933 -50976597 - RLTR26 LTR ERVK -83 559 1 5 1121 247 244 139 0 chr12 70281060 70281146 -50976384 + RSINE1 SINE B4 16 113 -52 5 1121 499 149 321 0 chr12 70281175 70281309 -50976221 + B3 SINE B2 26 202 -14 5 1121 570 261 22 7 chr12 70281336 70281475 -50976055 + B3A SINE B2 3 143 -55 5 1121 348 59 0 0 chr12 70281510 70281559 -50975971 + B1_Mus1 SINE Alu 16 65 -83 5 1121 1038 83 0 0 chr12 70281951 70282083 -50975447 + B1_Mus2 SINE Alu 1 132 -15 5 1121 327 256 156 8 chr12 70282142 70282166 -50975364 + B4 SINE B4 65 162 -130 5 1121 458 189 22 0 chr12 70282166 70282256 -50975274 + B1_Mus1 SINE Alu 13 104 -44 5 1121 760 163 88 7 chr12 70282430 70282566 -50974964 - B1_Mus1 SINE Alu 0 148 2 5 1121 449 141 118 0 chr12 70282628 70282713 -50974817 + B1_Mus2 SINE Alu 41 135 -12 5 1121 244 269 152 13 chr12 70282887 70282966 -50974564 - B3 SINE B2 -92 124 35 5 1121 568 168 83 8 chr12 70282967 70283087 -50974443 + B3 SINE B2 2 130 -86 5 1121 23 33 0 0 chr12 70283335 70283365 -50974165 + AT_rich Low_complexity Low_complexity 1 30 0 5 1121 361 263 49 41 chr12 70283524 70283647 -50973883 + ID_B1 SINE B4 12 135 -89 5 1121 180 0 0 0 chr12 70285126 70285146 -50972384 + (CGGGG)n Simple_repeat Simple_repeat 3 22 0 5 1121 331 217 216 40 chr12 70288210 70288335 -50969195 - RSINE1 SINE B4 -10 155 9 5 1121 903 185 113 11 chr12 70288883 70289069 -50968461 - B3 SINE B2 -11 205 1 5 1121 180 0 0 0 chr12 70289103 70289123 -50968407 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1121 1206 61 0 0 chr12 70289123 70289270 -50968260 - B1_Mus2 SINE Alu 0 147 1 5 1121 819 224 44 15 chr12 70289340 70289544 -50967986 - B3 SINE B2 -6 210 1 5 1121 509 190 132 0 chr12 70289573 70289694 -50967836 - B1_Mur3 SINE Alu -12 137 1 5 1121 617 253 19 45 chr12 70289708 70289865 -50967665 - RSINE1 SINE B4 0 165 13 5 1121 251 301 117 0 chr12 70290165 70290268 -50967262 + B1F SINE Alu 1 115 -34 5 1121 889 79 0 16 chr12 70290423 70290552 -50966978 + B1_Mus2 SINE Alu 21 147 0 5 1121 290 283 42 58 chr12 70290632 70290752 -50966778 - ID_B1 SINE B4 -1 223 106 5 1121 288 0 0 0 chr12 70291464 70291496 -50966034 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1121 732 146 55 119 chr12 70291621 70291823 -50965707 - B2_Mm2 SINE B2 -5 190 2 5 1121 254 229 186 0 chr12 70291920 70291990 -50965540 + B3 SINE B2 3 85 -131 5 1121 225 160 0 39 chr12 70292023 70292075 -50965455 + B3 SINE B2 164 213 -3 5 1121 458 119 12 0 chr12 70292090 70292174 -50965356 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1121 228 219 0 0 chr12 70292268 70292294 -50965236 + A-rich Low_complexity Low_complexity 1 26 0 5 1121 1186 55 7 0 chr12 70292294 70292440 -50965090 + B1_Mus2 SINE Alu 1 147 0 5 1121 228 219 0 0 chr12 70292440 70292477 -50965053 + A-rich Low_complexity Low_complexity 27 63 0 5 1121 540 205 156 0 chr12 70292548 70292670 -50964860 - B1_Mm SINE Alu -6 141 1 5 1121 780 189 59 6 chr12 70293064 70293234 -50964296 + B3 SINE B2 32 210 -6 5 1121 1137 89 0 0 chr12 70294033 70294179 -50963351 + B1_Mus2 SINE Alu 1 146 -1 5 1121 1663 26 5 0 chr12 70294490 70294681 -50962849 - B2_Mm1t SINE B2 0 193 2 5 1121 1443 80 37 0 chr12 70294695 70294883 -50962647 - B2_Mm2 SINE B2 0 195 1 5 1121 497 236 102 8 chr12 70294902 70295030 -50962500 + ID_B1 SINE B4 81 220 -4 5 1121 248 229 182 30 chr12 70295181 70295280 -50962250 + B1_Mm SINE Alu 11 124 -23 5 1121 34 0 0 0 chr12 70295459 70295493 -50962037 + AT_rich Low_complexity Low_complexity 1 34 0 5 1121 1467 66 16 0 chr12 70295589 70295772 -50961758 - B2_Mm2 SINE B2 -7 188 3 5 1121 287 255 147 28 chr12 70296482 70296525 -50961005 - B1F SINE Alu 0 149 103 5 1121 1200 61 0 0 chr12 70296525 70296672 -50960858 + B1_Mus2 SINE Alu 1 147 0 5 1121 287 271 134 37 chr12 70296672 70296767 -50960763 - B1F SINE Alu -47 102 4 5 1121 26 0 0 0 chr12 70298939 70298965 -50958565 + GC_rich Low_complexity Low_complexity 1 26 0 5 1121 224 299 26 0 chr12 70300039 70300116 -50957414 - ID4 SINE ID 0 83 5 5 1121 448 165 12 0 chr12 70300437 70300522 -50957008 + B1_Mus2 SINE Alu 62 147 0 5 1121 532 233 66 33 chr12 70300860 70301011 -50956519 - RSINE1 SINE B4 -6 159 4 5 1121 926 125 198 33 chr12 70301075 70301257 -50956273 + B3 SINE B2 2 213 -3 5 1121 883 189 0 7 chr12 70301889 70302033 -50955497 + B1_Mur2 SINE Alu 1 143 -6 5 1121 459 52 0 0 chr12 70302033 70302091 -50955439 + (CATA)n Simple_repeat Simple_repeat 4 61 0 5 1121 1287 72 44 0 chr12 70302482 70302662 -50954868 + B2_Mm1a SINE B2 3 190 -3 5 1121 281 300 14 0 chr12 70303188 70303258 -50954272 + ID SINE ID 3 73 -151 5 1121 556 194 78 0 chr12 70303372 70303501 -50954029 + B3A SINE B2 1 139 -59 5 1121 499 173 209 0 chr12 70304063 70304173 -50953357 - B1_Mus1 SINE Alu -5 143 11 5 1121 347 247 43 0 chr12 70305548 70305641 -50951889 + PB1D7 SINE Alu 12 108 -12 5 1121 1155 42 35 0 chr12 70305826 70305968 -50951562 + B1_Mus2 SINE Alu 1 147 0 5 1121 728 11 11 0 chr12 70305979 70306068 -50951462 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1121 1409 73 11 0 chr12 70306070 70306247 -50951283 + B2_Mm1t SINE B2 1 179 -14 5 1121 316 155 327 18 chr12 70306257 70306367 -50951163 + B2_Mm2 SINE B2 29 172 -23 5 1121 1316 91 16 5 chr12 70306367 70306554 -50950976 - B2_Mm2 SINE B2 -6 189 1 5 1121 226 253 0 51 chr12 70307005 70307084 -50950446 + B3A SINE B2 2 76 -122 5 1121 799 240 74 10 chr12 70307159 70307361 -50950169 + B3 SINE B2 2 216 0 5 1121 898 113 7 26 chr12 70307588 70307742 -50949788 + B2_Mm2 SINE B2 28 178 -17 5 1121 215 75 48 48 chr12 70307883 70307955 -50949575 + (TCTCTG)n Simple_repeat Simple_repeat 1 72 0 5 1121 390 70 55 14 chr12 70307993 70308066 -50949464 - L1_Mus4 LINE L1 -4 6632 6557 5 1121 207 253 232 46 chr12 70308068 70308308 -50949222 - L2 LINE L2 -352 3067 2770 5 1121 212 0 0 35 chr12 70308308 70308337 -50949193 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 5 1121 207 253 232 46 chr12 70308337 70308402 -50949128 - L2 LINE L2 -650 2769 2705 5 1121 205 213 0 0 chr12 70308470 70308517 -50949013 - L2 LINE L2 -869 2550 2504 5 1121 312 232 0 0 chr12 70309190 70309246 -50948284 - PB1D10 SINE Alu -20 97 42 5 1121 201 154 0 0 chr12 70309353 70309392 -50948138 + (CACG)n Simple_repeat Simple_repeat 1 39 0 5 1121 195 42 0 0 chr12 70309589 70309613 -50947917 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1121 1000 146 46 46 chr12 70309618 70309812 -50947718 - B2_Mm2 SINE B2 0 195 2 5 1121 21 0 0 0 chr12 70309961 70309982 -50947548 + AT_rich Low_complexity Low_complexity 1 21 0 5 1121 26 30 0 0 chr12 70310034 70310067 -50947463 + AT_rich Low_complexity Low_complexity 1 33 0 5 1121 216 0 0 0 chr12 70310101 70310125 -50947405 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1121 875 139 15 0 chr12 70310125 70310262 -50947268 - B1_Mur4 SINE Alu -9 141 3 5 1121 306 125 0 0 chr12 70310435 70310483 -50947047 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 5 1121 558 239 0 0 chr12 70310487 70310600 -50946930 - PB1D9 SINE Alu -7 113 1 5 1121 366 284 28 0 chr12 70310640 70310749 -50946781 - PB1 SINE Alu -7 120 9 5 1121 1127 88 0 0 chr12 70311297 70311444 -50946086 + B1_Mm SINE Alu 1 147 0 5 1121 331 277 188 45 chr12 70311555 70311778 -50945752 + RMER15 LTR ERVL 308 562 -13 5 1121 1430 83 10 10 chr12 70312859 70313053 -50944477 - B2_Mm2 SINE B2 0 195 2 5 1121 454 193 0 11 chr12 70313426 70313515 -50944015 - PB1D10 SINE Alu -28 89 2 5 1121 360 249 50 207 chr12 70313515 70313546 -50943984 - B4A SINE B4 -204 88 1 5 1121 537 125 57 0 chr12 70313546 70313634 -50943896 - B3 SINE B2 -123 93 1 5 1121 581 214 9 0 chr12 70313645 70313757 -50943773 - PB1D9 SINE Alu -5 115 3 5 1121 357 43 0 0 chr12 70313764 70313811 -50943719 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1121 1181 36 0 0 chr12 70313811 70313949 -50943581 - B1_Mus2 SINE Alu -8 139 2 6 1121 1520 53 11 0 chr12 70314617 70314806 -50942724 - B2_Mm1a SINE B2 -1 192 2 6 1121 451 250 52 15 chr12 70315066 70315200 -50942330 - ID_B1 SINE B4 0 224 86 6 1121 397 173 164 52 chr12 70315911 70315948 -50941582 + B1F2 SINE Alu 21 69 -80 6 1121 438 36 0 0 chr12 70315948 70316004 -50941526 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1121 397 173 164 52 chr12 70316004 70316082 -50941448 + B1F2 SINE Alu 70 148 -1 6 1121 233 148 16 32 chr12 70316543 70316606 -50940924 - BC1_Mm scRNA scRNA -90 62 1 6 1121 331 275 252 72 chr12 70316843 70317161 -50940369 - MTEa LTR MaLR -2 377 3 6 1121 416 282 19 57 chr12 70317629 70317787 -50939743 + MLT1K LTR MaLR 402 553 -42 6 1121 845 224 42 14 chr12 70317824 70318037 -50939493 + ID_B1 SINE B4 2 220 -4 6 1121 1068 98 0 225 chr12 70318086 70318335 -50939195 + B2_Mm2 SINE B2 3 195 0 6 1121 1595 282 48 31 chr12 70318788 70319435 -50938095 + L1MA4 LINE L1 4500 5157 -986 6 1121 543 322 60 39 chr12 70319435 70319719 -50937811 + B4A SINE B4 3 292 0 6 1121 993 108 0 26 chr12 70319792 70319944 -50937586 + B1_Mur4 SINE Alu 3 150 0 6 1121 497 237 43 37 chr12 70319984 70320146 -50937384 + RSINE1 SINE B4 3 165 0 6 1121 572 261 32 64 chr12 70320247 70320326 -50937204 + B3A SINE B2 7 80 -118 6 1121 3386 118 29 10 chr12 70320326 70320838 -50936692 + RLTR11A2 LTR ERVK 4 525 -2 6 1121 572 261 32 64 chr12 70320838 70320946 -50936584 + B3A SINE B2 81 188 -10 6 1121 237 33 0 0 chr12 70321139 70321169 -50936361 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 6 1121 286 298 65 60 chr12 70321238 70321438 -50936092 + L1MA4 LINE L1 5785 5985 -315 6 1121 351 294 41 25 chr12 70321948 70322070 -50935460 - B1F SINE Alu -5 144 21 6 1121 375 279 71 93 chr12 70322277 70322502 -50935028 + MIRb SINE MIR 22 241 -27 6 1121 857 148 0 13 chr12 70322623 70322780 -50934750 + CT-rich Low_complexity Low_complexity 2 156 0 6 1121 735 195 94 6 chr12 70323169 70323339 -50934191 + B3 SINE B2 26 210 -6 6 1121 201 125 19 77 chr12 70323677 70323729 -50933801 + C-rich Low_complexity Low_complexity 6 54 0 6 1121 615 244 0 0 chr12 70324213 70324344 -50933186 + ID_B1 SINE B4 85 215 -9 6 1121 226 196 19 19 chr12 70324409 70324461 -50933069 + PB1D7 SINE Alu 69 120 0 6 1121 759 189 36 7 chr12 70324516 70324655 -50932875 - B1_Mur1 SINE Alu -5 144 2 6 1121 189 0 0 0 chr12 70324867 70324888 -50932642 + (ATTG)n Simple_repeat Simple_repeat 1 21 0 6 1121 698 242 12 16 chr12 70324891 70325092 -50932438 - B3A SINE B2 -20 196 1 6 1121 445 240 10 10 chr12 70325369 70325466 -50932064 - RSINE1 SINE B4 -68 97 1 6 1121 625 184 59 0 chr12 70325831 70325967 -50931563 - B1_Mur1 SINE Alu 0 149 6 6 1121 293 115 368 19 chr12 70326247 70326353 -50931177 - B2_Mm2 SINE B2 -6 189 47 6 1121 1236 87 29 0 chr12 70326400 70326573 -50930957 - B2_Mm1t SINE B2 -14 179 2 6 1121 559 277 25 19 chr12 70326852 70327014 -50930516 + RSINE1 SINE B4 1 163 -2 6 1121 1373 66 11 16 chr12 70327692 70327878 -50929652 + B2_Mm1t SINE B2 2 186 -7 6 1121 574 154 0 28 chr12 70327966 70328073 -50929457 - PB1D9 SINE Alu 0 120 17 6 1121 608 257 0 0 chr12 70329759 70329899 -50927631 + B1_Mur1 SINE Alu 2 141 -8 6 1121 255 103 0 0 chr12 70329916 70329955 -50927575 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1121 328 355 0 8 chr12 70330028 70330150 -50927380 + ID_B1 SINE B4 84 204 -20 6 1121 954 210 121 9 chr12 70330346 70330458 -50927072 + ORR1D2 LTR MaLR 1 112 -258 6 1121 2186 100 18 64 chr12 70330458 70330800 -50926730 + ORR1A3 LTR MaLR 1 326 0 6 1121 954 210 121 9 chr12 70330800 70330918 -50926612 + ORR1D2 LTR MaLR 113 257 -113 6 1121 554 245 116 72 chr12 70330910 70331161 -50926369 + B4 SINE B4 13 274 -18 6 1121 314 45 23 0 chr12 70331176 70331220 -50926310 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1121 1127 75 7 7 chr12 70331237 70331384 -50926146 + B1_Mm SINE Alu 1 147 0 6 1121 595 327 58 68 chr12 70331693 70332090 -50925440 + RMER15-int LTR ERVL 1991 2383 -2616 6 1121 737 242 18 12 chr12 70332090 70332253 -50925277 + B4A SINE B4 1 164 -128 6 1121 486 219 101 51 chr12 70332285 70332463 -50925067 - RLTR22_Mur LTR ERVK 0 1848 1662 6 1121 261 83 0 0 chr12 70332471 70332507 -50925023 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1121 1352 181 14 21 chr12 70332515 70332798 -50924732 - RLTR22_Mur LTR ERVK -1567 281 1 6 1121 780 150 11 82 chr12 70332860 70333042 -50924488 - RLTR22_Mus LTR ERVK -1150 658 490 6 1121 412 198 144 29 chr12 70333076 70333180 -50924350 + PB1D9 SINE Alu 5 120 0 6 1121 260 211 338 0 chr12 70333230 70333301 -50924229 + B3 SINE B2 73 167 -49 6 1121 279 0 0 0 chr12 70333301 70333332 -50924198 + (CATA)n Simple_repeat Simple_repeat 4 34 0 6 1121 723 159 7 74 chr12 70333376 70333525 -50924005 + B1_Mur2 SINE Alu 10 148 -1 6 1121 219 192 19 0 chr12 70333526 70333578 -50923952 + A-rich Low_complexity Low_complexity 2 54 0 6 1121 987 328 57 69 chr12 70333661 70334152 -50923378 + RMER15-int LTR ERVL 2540 3012 -1987 6 1121 2855 38 21 0 chr12 70334152 70334491 -50923039 - ORR1A1 LTR MaLR 0 346 1 6 1121 987 328 57 69 chr12 70334491 70334742 -50922788 + RMER15-int LTR ERVL 3013 3273 -1726 6 1121 1365 185 164 18 chr12 70334770 70335105 -50922425 - ORR1C2 LTR MaLR 0 384 1 6 1121 628 312 97 9 chr12 70335201 70335418 -50922112 + RMER15-int LTR ERVL 3459 3694 -1305 6 1121 255 61 0 0 chr12 70335418 70335451 -50922079 - L1_Mur2 LINE L1 -1492 4385 4353 6 1121 5818 64 19 51 chr12 70335451 70335947 -50921583 + L1_Mus3 LINE L1 5826 6332 -306 6 1121 1240 41 0 0 chr12 70335947 70336094 -50921436 + B1_Mus2 SINE Alu 1 147 0 6 1121 5818 64 19 51 chr12 70336094 70336421 -50921109 + L1_Mus3 LINE L1 6333 6623 -15 6 1121 444 37 0 0 chr12 70336424 70336478 -50921052 + (GAAAA)n Simple_repeat Simple_repeat 4 57 0 6 1121 1290 278 71 82 chr12 70336488 70337111 -50920419 + RMER15-int LTR ERVL 3695 4310 -689 6 1121 790 150 23 138 chr12 70337111 70337328 -50920202 + MT2A LTR ERVL 1 192 -341 6 1121 13385 150 35 59 chr12 70337332 70337632 -50919898 + MERVL_2A-int LTR ERVL 3297 3576 -2185 6 1121 1164 82 0 0 chr12 70337632 70337779 -50919751 + B1_Mus2 SINE Alu 1 147 0 6 1121 13385 150 35 59 chr12 70337779 70337795 -50919735 + MERVL_2A-int LTR ERVL 3577 3577 -2184 6 1121 453 19 0 0 chr12 70337795 70337849 -50919681 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 6 1121 13385 150 35 59 chr12 70337849 70339732 -50917798 + MERVL_2A-int LTR ERVL 3577 5486 -275 6 1121 1223 54 0 0 chr12 70339732 70339879 -50917651 + B1_Mus1 SINE Alu 2 148 0 6 1121 13385 150 35 59 chr12 70339879 70340097 -50917433 + MERVL_2A-int LTR ERVL 5487 5660 -101 6 1121 429 211 94 0 chr12 70340105 70340233 -50917297 + MERVL_2A-int LTR ERVL 5619 5758 -3 6 1121 576 241 66 106 chr12 70340328 70340434 -50917096 + RLTR12B LTR ERVK 164 260 -268 6 1121 978 113 0 0 chr12 70340434 70340585 -50916945 + (GGA)n Simple_repeat Simple_repeat 1 151 0 6 1121 576 241 66 106 chr12 70340585 70340826 -50916704 + RLTR12B LTR ERVK 261 497 -31 6 1121 947 177 14 111 chr12 70340921 70341200 -50916330 + MT2B LTR ERVL 350 601 0 6 1121 1703 258 114 33 chr12 70341200 70341777 -50915753 + Lx8 LINE L1 6379 7002 -471 6 1121 576 159 93 0 chr12 70342466 70342573 -50914957 + B3A SINE B2 1 117 -81 6 1121 414 0 0 0 chr12 70342581 70342627 -50914903 + (CATA)n Simple_repeat Simple_repeat 1 46 0 6 1121 214 178 22 0 chr12 70343004 70343049 -50914481 + G-rich Low_complexity Low_complexity 3 48 0 6 1121 674 192 136 117 chr12 70343799 70344005 -50913525 - B3 SINE B2 -6 210 1 6 1121 442 263 0 68 chr12 70344087 70344234 -50913296 - B1F SINE Alu -1 148 12 6 1121 450 0 0 0 chr12 70345242 70345292 -50912238 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1121 303 28 0 0 chr12 70345899 70345935 -50911595 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1121 593 203 49 0 chr12 70346136 70346259 -50911271 + ID_B1 SINE B4 93 221 -3 6 1121 339 209 143 30 chr12 70346648 70346780 -50910750 - B3 SINE B2 -63 132 2 6 1121 539 260 20 7 chr12 70347205 70347352 -50910178 - B1F2 SINE Alu 0 149 1 6 1121 304 245 112 0 chr12 70347365 70347463 -50910067 - BC1_Mm scRNA scRNA -30 122 14 6 1121 322 279 50 7 chr12 70347484 70347625 -50909905 - B1F SINE Alu -2 147 1 6 1121 359 49 33 0 chr12 70347751 70347806 -50909724 - B1_Mur3 SINE Alu 0 149 93 6 1121 1506 239 51 73 chr12 70347806 70347883 -50909647 - RLTR20B3 LTR ERVK -2 526 457 6 1121 189 0 0 0 chr12 70347883 70347904 -50909626 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1121 1506 239 47 78 chr12 70347904 70348380 -50909150 - RLTR20B3 LTR ERVK -95 482 24 6 1121 702 199 85 95 chr12 70348536 70348571 -50908959 - B3A SINE B2 0 198 170 6 1121 330 26 0 0 chr12 70348571 70348610 -50908920 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 1121 702 199 85 95 chr12 70348610 70348774 -50908756 - B3A SINE B2 -29 169 1 6 1121 3501 162 32 29 chr12 70348937 70349599 -50907931 - Lx4B LINE L1 -4 7054 6391 6 1121 387 0 0 0 chr12 70349745 70349788 -50907742 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1121 306 0 0 0 chr12 70349788 70349821 -50907709 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1121 547 188 0 0 chr12 70349929 70350025 -50907505 + B1_Mus1 SINE Alu 2 97 -51 6 1121 23 97 0 0 chr12 70350184 70350256 -50907274 + AT_rich Low_complexity Low_complexity 1 72 0 6 1121 427 279 29 29 chr12 70350278 70350418 -50907112 - RSINE1 SINE B4 -11 154 15 6 1121 683 70 0 0 chr12 70350485 70350585 -50906945 - B1_Mus2 SINE Alu 0 147 48 6 1121 318 213 179 8 chr12 70350902 70351025 -50906505 + B3A SINE B2 3 146 -52 6 1121 703 160 101 0 chr12 70353306 70353425 -50904105 + B1_Mur4 SINE Alu 1 131 -19 6 1121 2032 63 14 22 chr12 70353528 70353804 -50903726 - L1Md_F2 LINE L1 0 6582 6309 6 1121 224 250 0 0 chr12 70354036 70354084 -50903446 - ID4_ SINE ID -18 65 18 6 1121 466 248 59 15 chr12 70354475 70354610 -50902920 - B1F SINE Alu -8 141 1 6 1121 665 247 7 0 chr12 70355121 70355267 -50902263 - B1F1 SINE Alu -2 147 1 6 1121 816 125 41 68 chr12 70355304 70355450 -50902080 + B1_Mur4 SINE Alu 3 144 -6 6 1121 247 225 141 0 chr12 70355543 70355614 -50901916 - B3 SINE B2 -7 209 129 6 1121 578 14 14 0 chr12 70355614 70355685 -50901845 + (TC)n Simple_repeat Simple_repeat 1 72 0 7 1121 804 214 152 80 chr12 70355696 70356097 -50901433 + RMER10A LTR ERVL 12 441 -1 7 1121 198 0 0 0 chr12 70356097 70356119 -50901411 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1121 23 25 0 24 chr12 70356162 70356184 -50901346 + AT_rich Low_complexity Low_complexity 1 22 0 7 1121 1249 41 0 0 chr12 70356184 70356330 -50901200 - B1_Mus2 SINE Alu 0 147 2 7 1121 23 25 0 24 chr12 70356330 70356348 -50901182 + AT_rich Low_complexity Low_complexity 1 18 0 7 1121 557 164 84 25 chr12 70356361 70356377 -50901153 - B1_Mus2 SINE Alu -18 129 116 7 1121 833 81 8 0 chr12 70356377 70356500 -50901030 + (GA)n Simple_repeat Simple_repeat 1 124 0 7 1121 557 164 84 25 chr12 70356500 70356602 -50900928 - B1_Mus2 SINE Alu -32 115 4 7 1121 334 246 25 66 chr12 70356503 70356625 -50900905 - MT2B LTR ERVL -337 264 148 7 1121 712 236 165 0 chr12 70356625 70356807 -50900723 - B3 SINE B2 0 216 5 7 1121 308 276 37 37 chr12 70357494 70357603 -50899927 - PB1D10 SINE Alu -8 109 1 7 1121 342 186 133 44 chr12 70357715 70357805 -50899725 - PB1D10 SINE Alu -7 110 13 7 1121 651 88 0 0 chr12 70357893 70357984 -50899546 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 7 1121 840 167 81 57 chr12 70358213 70358423 -50899107 - B3 SINE B2 0 216 2 7 1121 21 36 0 0 chr12 70358825 70358853 -50898677 + AT_rich Low_complexity Low_complexity 1 28 0 7 1121 408 40 0 0 chr12 70359758 70359808 -50897722 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 7 1121 331 247 39 0 chr12 70359811 70359898 -50897632 - PB1D10 SINE Alu -12 115 18 7 1121 409 202 22 0 chr12 70359957 70360046 -50897484 + B1_Mur3 SINE Alu 7 97 -52 7 1121 187 143 0 58 chr12 70360074 70360126 -50897404 + CT-rich Low_complexity Low_complexity 2 50 0 7 1121 524 260 50 0 chr12 70360165 70360299 -50897231 - B1F1 SINE Alu -5 142 5 7 1121 241 276 0 95 chr12 70360228 70360312 -50897218 - B4A SINE B4 -134 158 83 7 1121 228 240 134 10 chr12 70360333 70360430 -50897100 + PB1D10 SINE Alu 9 117 0 7 1121 447 274 62 50 chr12 70360710 70360871 -50896659 - RSINE1 SINE B4 0 165 3 7 1121 921 201 33 42 chr12 70360937 70361150 -50896380 - B3 SINE B2 -5 211 1 7 1121 652 186 14 41 chr12 70361153 70361299 -50896231 - B1_Mus2 SINE Alu 0 147 6 7 1121 344 276 0 0 chr12 70361710 70361786 -50895744 - RSINE1 SINE B4 -6 159 84 7 1121 1204 41 7 0 chr12 70361861 70362006 -50895524 + B1_Mus2 SINE Alu 2 147 0 7 1121 441 279 154 17 chr12 70362047 70362280 -50895250 + B4A SINE B4 3 267 -25 7 1121 1033 169 11 0 chr12 70362331 70362508 -50895022 + B2_Mm1t SINE B2 1 179 -14 7 1121 893 41 0 31 chr12 70362508 70362635 -50894895 + B1_Mus2 SINE Alu 25 147 0 7 1121 276 100 0 0 chr12 70362635 70362675 -50894855 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1121 227 0 0 0 chr12 70362681 70362715 -50894815 + L1_Mus2 LINE L1 6533 6566 0 7 1121 2650 93 8 0 chr12 70362733 70363097 -50894433 + L1_Mus3 LINE L1 6270 6636 -2 7 1121 1140 64 28 44 chr12 70363171 70363352 -50894178 - B2_Mm1a SINE B2 -7 186 9 7 1121 999 204 30 0 chr12 70363370 70363571 -50893959 - B3 SINE B2 -9 207 1 7 1121 213 375 0 0 chr12 70364639 70364711 -50892819 + ID_B1 SINE B4 86 157 -67 7 1121 1144 82 7 0 chr12 70364711 70364858 -50892672 + B1_Mus1 SINE Alu 1 148 0 7 1121 232 282 14 14 chr12 70364883 70364955 -50892575 + ID_B1 SINE B4 149 220 -4 7 1121 231 326 43 0 chr12 70366097 70366189 -50891341 - MER20 DNA MER1_type -1 218 123 7 1121 339 229 62 0 chr12 70366892 70366988 -50890542 + PB1D7 SINE Alu 1 102 -18 7 1121 732 236 55 15 chr12 70367360 70367562 -50889968 - MER63A DNA AcHobo 0 210 1 7 1121 4539 12 0 0 chr12 70367841 70368334 -50889196 - MT2_Mm LTR ERVL 0 493 1 7 1121 305 271 46 9 chr12 70368564 70368672 -50888858 + L1MA4 LINE L1 6117 6228 -72 7 1121 216 67 0 0 chr12 70368697 70368727 -50888803 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1121 263 277 0 78 chr12 70369529 70369619 -50887911 - ID4_ SINE ID 0 83 1 7 1121 23 0 0 0 chr12 70369730 70369753 -50887777 + AT_rich Low_complexity Low_complexity 1 23 0 7 1121 1358 84 5 10 chr12 70369825 70370018 -50887512 + B2_Mm1a SINE B2 2 193 0 7 1121 1599 43 0 0 chr12 70370299 70370484 -50887046 - B2_Mm1t SINE B2 -7 186 2 7 1121 23 0 0 0 chr12 70370546 70370569 -50886961 + AT_rich Low_complexity Low_complexity 1 23 0 7 1121 210 324 0 0 chr12 70370643 70370711 -50886819 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 7 1121 359 279 71 39 chr12 70370932 70371059 -50886471 + ID_B1 SINE B4 1 131 -93 7 1121 366 328 113 0 chr12 70371246 70371493 -50886037 + L1MB4 LINE L1 5815 6090 -93 7 1121 237 307 38 114 chr12 70371654 70371696 -50885834 + B4A SINE B4 52 79 -213 7 1121 628 234 21 14 chr12 70371696 70371839 -50885691 + B1_Mur1 SINE Alu 1 144 -5 7 1121 2681 91 60 2 chr12 70371897 70372295 -50885235 - BGLII LTR ERVK 0 421 1 7 1121 3229 215 37 44 chr12 70372295 70373220 -50884310 - RMER3D-int LTR ERVK 0 2842 1925 7 1121 3043 189 132 125 chr12 70373219 70373670 -50883860 - RMER3D-int LTR ERVK -1146 1696 1301 7 1121 1191 54 0 0 chr12 70373670 70373817 -50883713 - B1_Mus2 SINE Alu 0 147 1 7 1121 3043 189 132 125 chr12 70373817 70374588 -50882942 - RMER3D-int LTR ERVK -1542 1300 466 7 1121 2815 85 55 2 chr12 70374979 70375379 -50882151 - BGLII LTR ERVK 0 421 1 7 1121 352 127 0 0 chr12 70375501 70375556 -50881974 - B2_Mm2 SINE B2 -94 101 47 7 1121 1121 105 0 6 chr12 70375620 70375783 -50881747 - B2_Mm2 SINE B2 -32 163 2 7 1121 263 240 0 0 chr12 70375824 70375874 -50881656 + B1F SINE Alu 3 52 -97 7 1121 533 203 47 68 chr12 70375960 70376108 -50881422 + B1_Mus2 SINE Alu 1 145 -2 7 1121 300 172 0 0 chr12 70376109 70376167 -50881363 + (TAA)n Simple_repeat Simple_repeat 2 59 0 7 1121 247 131 129 16 chr12 70376203 70376265 -50881265 - PB1D10 SINE Alu -45 72 4 7 1121 1314 63 0 0 chr12 70377022 70377778 -50879752 + (CA)n Simple_repeat Simple_repeat 1 756 0 7 1121 986 129 7 0 chr12 70377798 70377945 -50879585 + B1_Mur3 SINE Alu 1 148 -1 7 1121 347 182 75 75 chr12 70377985 70378092 -50879438 - RLTR21 LTR ERVK 0 1572 1466 7 1121 248 279 21 41 chr12 70378059 70378156 -50879374 - RLTR21 LTR ERVK -40 1532 1438 7 1121 1041 94 0 0 chr12 70378183 70378452 -50879078 + (CA)n Simple_repeat Simple_repeat 1 269 0 7 1121 3872 186 107 6 chr12 70378463 70379397 -50878133 - RMER12B LTR ERVK -208 1196 169 7 1121 1484 64 18 9 chr12 70379397 70379618 -50877912 - BGLII LTR ERVK 0 421 199 7 1121 696 212 73 0 chr12 70379621 70379772 -50877758 - RMER12B LTR ERVK -1241 163 2 7 1121 775 241 0 0 chr12 70379984 70380146 -50877384 + B4A SINE B4 2 163 -129 7 1121 189 0 0 0 chr12 70380167 70380188 -50877342 + (CAT)n Simple_repeat Simple_repeat 1 21 0 7 1121 360 43 0 0 chr12 70380334 70380380 -50877150 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1121 354 98 0 0 chr12 70380901 70380952 -50876578 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 7 1121 24 0 0 0 chr12 70381764 70381788 -50875742 + AT_rich Low_complexity Low_complexity 1 24 0 7 1121 885 143 207 22 chr12 70381899 70382078 -50875452 - B3 SINE B2 -3 213 2 7 1121 401 165 35 0 chr12 70382101 70382186 -50875344 + (TCTTG)n Simple_repeat Simple_repeat 1 88 0 7 1121 677 184 12 2 chr12 70382187 70382321 -50875209 - B1_Mur3 SINE Alu -1 148 6 7 1121 304 220 86 48 chr12 70382231 70382336 -50875194 - MT2B LTR ERVL -344 257 149 7 1121 190 0 32 32 chr12 70382336 70382367 -50875163 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 7 1121 279 0 0 0 chr12 70382372 70382403 -50875127 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1121 1101 60 0 0 chr12 70382404 70382538 -50874992 - B1_Mus2 SINE Alu -12 135 2 7 1121 2779 126 185 0 chr12 70382992 70383484 -50874046 + RMER4B LTR ERVK 3 585 0 7 1121 328 298 0 40 chr12 70383568 70383683 -50873847 + PB1D7 SINE Alu 11 119 -1 7 1121 363 277 125 6 chr12 70383686 70383846 -50873684 + B3A SINE B2 4 182 -16 7 1121 254 322 45 45 chr12 70385433 70385589 -50871941 + RSINE1 SINE B4 2 157 -8 7 1122 411 239 149 0 chr12 70386025 70386159 -50871371 - MTE-int LTR MaLR -35 1545 1392 7 1122 443 110 14 0 chr12 70386334 70386407 -50871123 + ORR1B2 LTR MaLR 1 74 -293 7 1122 1243 46 23 0 chr12 70386395 70386568 -50870962 + B2_Mm1t SINE B2 14 190 -3 7 1122 1412 132 92 4 chr12 70386563 70386814 -50870716 + ORR1B2 LTR MaLR 95 367 0 7 1122 1309 89 28 0 chr12 70386834 70387014 -50870516 - B2_Mm1t SINE B2 -8 185 1 7 1122 468 217 172 16 chr12 70387225 70387347 -50870183 - B1_Mur2 SINE Alu 0 149 9 7 1122 246 298 128 15 chr12 70387370 70387503 -50870027 - Charlie1b DNA MER1_type -200 323 176 7 1122 1185 81 0 0 chr12 70387524 70387890 -50869640 + (TG)n Simple_repeat Simple_repeat 1 366 0 7 1122 398 211 0 0 chr12 70387910 70387981 -50869549 - RSINE1 SINE B4 -57 108 38 7 1122 1607 272 12 10 chr12 70387981 70388397 -50869133 - Lx9 LINE L1 -618 7026 6610 7 1122 478 192 162 19 chr12 70388912 70389066 -50868464 + Lx9 LINE L1 4997 5172 -675 7 1122 273 326 56 0 chr12 70389093 70389237 -50868293 - RMER15 LTR ERVL -23 552 401 7 1122 2594 227 45 27 chr12 70389521 70390271 -50867259 + Lx9 LINE L1 5172 5969 -1675 7 1122 609 278 52 17 chr12 70390542 70390714 -50866816 + Lx9 LINE L1 6342 6519 -1125 7 1122 648 231 82 0 chr12 70390727 70390909 -50866621 - B3A SINE B2 -1 197 1 7 1122 3276 44 15 0 chr12 70391140 70391530 -50866000 - MTA_Mm LTR MaLR 0 396 1 7 1122 626 294 112 12 chr12 70391778 70392036 -50865494 - B4A SINE B4 0 292 9 7 1122 405 208 26 0 chr12 70392064 70392141 -50865389 - PB1D7 SINE Alu -15 105 27 7 1122 32 43 0 0 chr12 70392266 70392312 -50865218 + AT_rich Low_complexity Low_complexity 1 46 0 7 1122 198 256 0 0 chr12 70392762 70392840 -50864690 + (CA)n Simple_repeat Simple_repeat 1 78 0 8 1122 2098 316 78 20 chr12 70393029 70394151 -50863379 - L1_Mur3 LINE L1 -113 5767 4581 8 1122 1024 205 15 5 chr12 70394270 70394476 -50863054 - B3 SINE B2 -7 209 2 8 1122 291 276 99 30 chr12 70394582 70394676 -50862854 + ID_B1 SINE B4 41 141 -83 8 1122 274 204 19 0 chr12 70394676 70394730 -50862800 + B1F2 SINE Alu 4 58 -91 8 1122 270 218 0 0 chr12 70394735 70394790 -50862740 + B1F2 SINE Alu 4 58 -91 8 1122 550 196 45 0 chr12 70394790 70394902 -50862628 + ID_B1 SINE B4 79 195 -29 8 1122 342 0 0 0 chr12 70395289 70395327 -50862203 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1122 333 0 0 0 chr12 70395327 70395363 -50862167 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1122 1897 142 29 49 chr12 70395383 70395696 -50861834 - RMER6A LTR ERVK 0 756 496 8 1122 1232 105 12 0 chr12 70395696 70395868 -50861662 - B2_Mm1a SINE B2 -18 175 2 8 1122 2038 131 38 13 chr12 70395868 70396263 -50861267 - RMER6A LTR ERVK -243 513 109 8 1122 931 126 135 50 chr12 70396400 70396600 -50860930 + RLTR14 LTR ERV1 166 382 0 8 1122 21 36 0 0 chr12 70397710 70397738 -50859792 + GC_rich Low_complexity Low_complexity 1 28 0 8 1122 306 0 0 0 chr12 70399195 70399229 -50858301 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 1122 1018 57 0 0 chr12 70399229 70399369 -50858161 - B1_Mus2 SINE Alu -2 145 6 8 1122 660 230 86 6 chr12 70399405 70399580 -50857950 + B3 SINE B2 2 190 -26 8 1122 1315 72 66 11 chr12 70399826 70400009 -50857521 - B2_Mm2 SINE B2 0 195 3 8 1122 990 148 32 129 chr12 70400516 70400764 -50856766 + URR1B DNA MER1_type 1 224 -1 8 1122 549 250 0 53 chr12 70401362 70401493 -50856037 - B1_Mur3 SINE Alu -22 127 4 8 1122 217 289 10 82 chr12 70401795 70401893 -50855637 + BC1_Mm scRNA scRNA 14 104 -48 8 1122 1115 189 5 35 chr12 70401897 70402100 -50855430 + B3 SINE B2 1 197 -19 8 1122 849 108 71 14 chr12 70402121 70402262 -50855268 + B1_Mur3 SINE Alu 1 149 0 8 1122 285 292 0 27 chr12 70402694 70402768 -50854762 + PB1D9 SINE Alu 1 72 -48 8 1122 1681 16 16 0 chr12 70403814 70404003 -50853527 + B2_Mm1a SINE B2 2 193 0 8 1122 596 264 7 13 chr12 70405085 70405235 -50852295 - RSINE1 SINE B4 -14 151 3 8 1122 1252 54 0 0 chr12 70405313 70405461 -50852069 + B1_Mus1 SINE Alu 1 148 0 8 1122 426 219 43 28 chr12 70405984 70406125 -50851405 - RLTR11A2 LTR ERVK -27 426 284 8 1122 615 257 16 134 chr12 70406179 70406493 -50851037 - RLTR11A2 LTR ERVK -176 277 1 8 1122 1267 92 60 0 chr12 70406856 70407040 -50850490 - B2_Mm2 SINE B2 0 195 1 8 1122 378 282 85 122 chr12 70407352 70407647 -50849883 - B4A SINE B4 -4 288 5 8 1122 459 0 0 0 chr12 70407691 70407742 -50849788 + (TATG)n Simple_repeat Simple_repeat 2 52 0 8 1122 344 252 96 35 chr12 70407870 70407985 -50849545 - B1F SINE Alu 0 149 28 8 1122 305 204 67 11 chr12 70408967 70409056 -50848474 + PB1D10 SINE Alu 4 97 -20 8 1122 1345 102 37 0 chr12 70409333 70409520 -50848010 - B2_Mm2 SINE B2 0 195 2 8 1122 534 147 88 0 chr12 70409584 70409686 -50847844 + B2_Mm2 SINE B2 85 195 0 8 1122 531 205 32 16 chr12 70409711 70409835 -50847695 - B1_Mur1 SINE Alu -22 127 2 8 1122 215 317 200 0 chr12 70410081 70410201 -50847329 - RSINE1 SINE B4 -4 161 18 8 1122 653 140 115 8 chr12 70410233 70410363 -50847167 - B1_Mur4 SINE Alu 0 150 7 8 1122 1179 120 17 11 chr12 70410376 70410553 -50846977 - B2_Mm2 SINE B2 -14 181 4 8 1122 495 250 158 43 chr12 70410596 70410780 -50846750 - B3 SINE B2 -11 205 1 8 1122 657 168 93 5 chr12 70411495 70411672 -50845858 - B3 SINE B2 -1 194 1 8 1122 227 289 152 20 chr12 70411775 70411874 -50845656 - B1F1 SINE Alu -27 122 11 8 1122 226 336 70 9 chr12 70411779 70411893 -50845637 - ID_B1 SINE B4 -38 186 66 8 1122 364 149 25 63 chr12 70412148 70412227 -50845303 - PB1D9 SINE Alu -13 107 32 8 1122 647 106 14 0 chr12 70412281 70412399 -50845131 + B1_Mur4 SINE Alu 1 120 0 8 1122 537 280 28 7 chr12 70414173 70414317 -50843213 - B4A SINE B4 -136 156 10 8 1122 567 270 7 21 chr12 70414318 70414458 -50843072 - B1_Mur2 SINE Alu -11 138 1 8 1122 270 0 0 0 chr12 70414471 70414501 -50843029 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 8 1122 316 342 17 9 chr12 70414534 70414649 -50842881 + MER20 DNA MER1_type 99 214 -5 8 1122 1264 82 60 5 chr12 70414779 70414963 -50842567 - B2_Mm2 SINE B2 0 195 2 8 1122 413 213 100 18 chr12 70415131 70415241 -50842289 + PB1D9 SINE Alu 2 120 0 8 1122 25 0 0 0 chr12 70415893 70415918 -50841612 + AT_rich Low_complexity Low_complexity 1 25 0 8 1122 248 316 0 0 chr12 70416274 70416331 -50841199 - PB1D7 SINE Alu -61 59 3 8 1122 180 77 0 0 chr12 70416484 70416510 -50841020 + (CTAAA)n Simple_repeat Simple_repeat 5 30 0 8 1122 294 217 113 28 chr12 70416918 70416989 -50840541 - B4 SINE B4 -41 251 175 8 1122 268 271 158 0 chr12 70417525 70417658 -50839872 - RSINE1 SINE B4 -1 164 11 8 1122 1080 87 0 0 chr12 70418573 70418711 -50838819 + B1_Mus1 SINE Alu 2 139 -9 8 1122 210 37 0 0 chr12 70418711 70418738 -50838792 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1122 765 206 35 6 chr12 70418738 70418909 -50838621 - B3 SINE B2 -7 209 34 8 1122 399 273 24 16 chr12 70419704 70419827 -50837703 - RMER20B LTR ERVK -503 124 1 8 1122 1387 18 107 0 chr12 70419951 70420120 -50837410 - B2_Mm1a SINE B2 -6 187 1 8 1122 576 305 57 53 chr12 70420231 70420512 -50837018 - B4A SINE B4 -6 286 5 8 1122 685 201 208 22 chr12 70420640 70420818 -50836712 + B3 SINE B2 1 211 -5 8 1122 1180 75 0 0 chr12 70420887 70421034 -50836496 + B1_Mus1 SINE Alu 2 148 0 8 1122 216 0 0 0 chr12 70421034 70421058 -50836472 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1122 471 111 37 0 chr12 70421058 70421139 -50836391 - B2_Mm2 SINE B2 -14 181 98 8 1122 452 303 44 25 chr12 70421156 70421315 -50836215 - RSINE1 SINE B4 0 165 4 8 1122 226 286 26 0 chr12 70421723 70421800 -50835730 - ID_B1 SINE B4 -21 203 125 8 1122 338 156 0 30 chr12 70421956 70422022 -50835508 + B1_Mur1 SINE Alu 86 149 0 8 1122 282 29 0 0 chr12 70422151 70422186 -50835344 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1122 469 179 158 0 chr12 70422197 70422292 -50835238 - B1_Mus2 SINE Alu -37 110 1 8 1122 481 287 77 17 chr12 70422304 70422485 -50835045 - B3A SINE B2 -6 192 1 8 1122 240 316 13 0 chr12 70422762 70422838 -50834692 - ID4 SINE ID -2 81 5 8 1122 1302 97 11 0 chr12 70424058 70424234 -50833296 + B2_Mm1t SINE B2 2 179 -14 8 1122 227 111 581 37 chr12 70424299 70424392 -50833138 + B2_Mm2 SINE B2 47 189 -6 8 1122 1000 93 168 0 chr12 70424539 70424700 -50832830 + B2_Mm2 SINE B2 2 189 -6 8 1122 355 355 0 41 chr12 70424712 70424863 -50832667 + B1F2 SINE Alu 2 144 -5 8 1122 604 277 104 39 chr12 70424881 70425140 -50832390 + B4 SINE B4 3 278 -14 8 1122 543 16 0 0 chr12 70425151 70425215 -50832315 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 1122 470 267 50 0 chr12 70426016 70426136 -50831394 - ID_B1 SINE B4 -11 213 88 8 1122 369 274 25 17 chr12 70426564 70426683 -50830847 - PB1D9 SINE Alu 0 120 1 8 1122 714 225 64 12 chr12 70426718 70426889 -50830641 - B3A SINE B2 -18 180 1 8 1122 567 0 0 0 chr12 70426907 70426970 -50830560 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1122 432 244 81 8 chr12 70426975 70427099 -50830431 - RSINE1 SINE B4 -29 136 4 8 1122 325 286 31 0 chr12 70427461 70427559 -50829971 + B1F1 SINE Alu 1 101 -48 8 1122 1474 63 5 21 chr12 70427560 70427754 -50829776 + B2_Mm1a SINE B2 2 192 -1 8 1122 808 162 15 0 chr12 70428128 70428264 -50829266 + B1_Mus2 SINE Alu 9 146 -1 8 1122 280 310 103 21 chr12 70428298 70428314 -50829216 + ID_B1 SINE B4 66 222 -2 8 1122 612 189 70 16 chr12 70428314 70428443 -50829087 + B1_Mur1 SINE Alu 12 147 -2 8 1122 243 0 0 0 chr12 70428926 70428953 -50828577 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 8 1122 315 22 0 0 chr12 70429046 70429092 -50828438 - B1_Mur4 SINE Alu 0 150 105 8 1122 872 65 3 2 chr12 70429076 70429204 -50828326 + B1_Mus1 SINE Alu 12 140 -9 8 1122 536 289 31 25 chr12 70429294 70429457 -50828073 - ID_B1 SINE B4 0 224 61 8 1122 1017 257 79 23 chr12 70429543 70429897 -50827633 + ORR1D1 LTR MaLR 1 374 0 8 1122 861 156 21 0 chr12 70430078 70430219 -50827311 + B1_Mur1 SINE Alu 5 148 -1 8 1122 360 0 0 0 chr12 70430219 70430259 -50827271 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1122 186 71 0 0 chr12 70430302 70430330 -50827200 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1122 927 188 130 67 chr12 70430387 70430672 -50826858 - MTC LTR MaLR -2 419 117 8 1122 318 295 31 21 chr12 70430661 70430758 -50826772 - PB1D7 SINE Alu -5 115 18 8 1122 189 175 0 0 chr12 70430776 70430816 -50826714 + T-rich Low_complexity Low_complexity 1 40 0 8 1122 645 214 64 0 chr12 70430826 70430966 -50826564 - B1_Mur4 SINE Alu -1 149 1 8 1122 329 122 22 99 chr12 70430966 70431057 -50826473 - L1M4 LINE L1 -2625 3521 3438 9 1122 439 214 203 26 chr12 70431055 70431291 -50826239 - L1M4 LINE L1 -3412 2734 2469 9 1122 1167 44 0 0 chr12 70431441 70431576 -50825954 + B1_Mm SINE Alu 3 137 -10 9 1122 369 0 0 0 chr12 70431576 70431617 -50825913 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 9 1122 1393 89 26 0 chr12 70431628 70431818 -50825712 + B2_Mm2 SINE B2 1 195 0 9 1122 336 243 103 108 chr12 70431832 70432026 -50825504 + B3A SINE B2 1 193 -5 9 1122 710 308 9 9 chr12 70432213 70432426 -50825104 - B3 SINE B2 0 216 4 9 1122 26 0 0 0 chr12 70432986 70433012 -50824518 + AT_rich Low_complexity Low_complexity 1 26 0 9 1122 431 194 118 0 chr12 70433189 70433282 -50824248 + PB1D9 SINE Alu 5 108 -12 9 1122 261 75 0 0 chr12 70433476 70433516 -50824014 + (TCTCTG)n Simple_repeat Simple_repeat 4 43 0 9 1122 519 205 97 16 chr12 70433516 70433640 -50823890 - B1_Mus1 SINE Alu -12 136 3 9 1122 315 0 0 0 chr12 70433649 70433684 -50823846 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 9 1122 947 133 0 0 chr12 70433694 70433829 -50823701 - B1_Mus1 SINE Alu -12 136 2 9 1122 404 256 39 58 chr12 70433832 70434027 -50823503 - B3A SINE B2 -2 193 1 9 1122 485 245 10 0 chr12 70434193 70434295 -50823235 + PB1D10 SINE Alu 3 105 -12 9 1122 526 171 0 0 chr12 70434405 70434493 -50823037 + B3 SINE B2 3 90 -126 9 1122 1187 54 7 0 chr12 70434494 70434641 -50822889 + B1_Mus1 SINE Alu 1 148 0 9 1122 282 217 155 70 chr12 70434678 70434807 -50822723 + B3 SINE B2 77 216 0 9 1122 404 291 64 0 chr12 70435140 70435250 -50822280 - PB1D10 SINE Alu 0 117 1 9 1122 415 182 13 0 chr12 70435376 70435453 -50822077 - B1_Mur2 SINE Alu -8 141 64 9 1122 323 57 0 54 chr12 70435452 70435508 -50822022 + B1_Mus2 SINE Alu 95 147 0 9 1122 414 0 0 0 chr12 70435681 70435727 -50821803 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1122 326 310 46 60 chr12 70435950 70436063 -50821467 + B1F1 SINE Alu 1 115 -34 9 1122 675 67 0 0 chr12 70436063 70436152 -50821378 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 9 1122 326 310 46 60 chr12 70436152 70436173 -50821357 + B1F1 SINE Alu 116 135 -14 9 1122 180 0 0 0 chr12 70436173 70436193 -50821337 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 9 1122 326 310 46 60 chr12 70436193 70436208 -50821322 + B1F1 SINE Alu 136 149 0 9 1122 633 198 107 0 chr12 70436263 70436384 -50821146 - B1_Mur3 SINE Alu -15 134 1 9 1122 264 271 64 50 chr12 70436465 70436605 -50820925 + L1M5 LINE L1 3606 3747 -2399 9 1122 217 266 31 0 chr12 70436783 70436847 -50820683 + PB1D10 SINE Alu 41 106 -11 9 1122 288 0 0 0 chr12 70436847 70436879 -50820651 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 9 1122 363 202 19 9 chr12 70437139 70437244 -50820286 + Lx9 LINE L1 7531 7636 -8 9 1122 720 208 0 20 chr12 70437310 70437462 -50820068 + B1_Mur3 SINE Alu 1 149 0 9 1122 316 280 65 0 chr12 70437700 70437793 -50819737 - PB1D10 SINE Alu -3 114 16 9 1122 312 246 186 0 chr12 70437750 70437868 -50819662 - ID_B1 SINE B4 -84 140 1 9 1122 437 301 35 0 chr12 70437883 70437996 -50819534 - PB1 SINE Alu -4 123 7 9 1122 533 222 18 44 chr12 70438040 70438153 -50819377 - B3A SINE B2 -87 111 2 9 1122 357 269 108 20 chr12 70438472 70438620 -50818910 + RSINE1 SINE B4 5 165 0 9 1122 31 0 0 0 chr12 70438895 70438926 -50818604 + AT_rich Low_complexity Low_complexity 1 31 0 9 1122 232 268 141 35 chr12 70438991 70439076 -50818454 - B1_Mur4 SINE Alu -55 95 2 9 1122 452 205 0 0 chr12 70439093 70439171 -50818359 + RSINE1 SINE B4 3 80 -85 9 1122 27 29 0 0 chr12 70439306 70439340 -50818190 + AT_rich Low_complexity Low_complexity 1 34 0 9 1122 374 289 87 0 chr12 70439383 70439487 -50818043 + B1F2 SINE Alu 2 114 -35 9 1122 1099 118 139 35 chr12 70439569 70439770 -50817760 + URR1A DNA MER1_type 5 226 0 9 1122 589 124 27 54 chr12 70439833 70439944 -50817586 - B1_Mur1 SINE Alu -27 122 15 9 1122 436 304 0 0 chr12 70439960 70440072 -50817458 - ID_B1 SINE B4 -20 204 93 9 1122 407 265 17 17 chr12 70440126 70440245 -50817285 + RSINE1 SINE B4 2 120 -45 9 1122 1239 48 0 0 chr12 70440245 70440392 -50817138 + B1_Mus1 SINE Alu 1 147 -1 9 1122 1571 47 5 0 chr12 70441067 70441257 -50816273 + B2_Mm1t SINE B2 2 192 -1 9 1122 876 274 42 23 chr12 70441278 70441588 -50815942 + RMER15 LTR ERVL 260 575 0 9 1122 896 212 15 30 chr12 70441652 70441851 -50815679 + B3 SINE B2 2 197 -19 9 1122 290 279 24 37 chr12 70442968 70443050 -50814480 - ID4 SINE ID 0 83 3 9 1122 951 47 132 0 chr12 70443071 70443200 -50814330 + B1_Mm SINE Alu 2 147 0 9 1122 554 282 91 6 chr12 70443219 70443394 -50814136 - B3A SINE B2 -3 195 6 9 1122 582 128 440 7 chr12 70443443 70443593 -50813937 + B3 SINE B2 2 216 0 9 1122 775 242 25 31 chr12 70443601 70443797 -50813733 - B3A SINE B2 0 198 4 9 1122 796 212 149 11 chr12 70443828 70444009 -50813521 + B3 SINE B2 1 206 -10 9 1122 354 239 74 16 chr12 70444562 70444678 -50812852 + B1F2 SINE Alu 2 149 0 9 1122 614 216 17 0 chr12 70444678 70444794 -50812736 + B3 SINE B2 6 123 -93 9 1122 1204 94 66 0 chr12 70444843 70445024 -50812506 - B2_Mm1a SINE B2 0 193 1 9 1122 294 222 153 0 chr12 70445507 70445579 -50811951 - ID4_ SINE ID 0 83 1 9 1122 213 65 0 0 chr12 70445810 70445841 -50811689 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 9 1122 1168 54 0 13 chr12 70446066 70446215 -50811315 - B1_Mus2 SINE Alu 0 147 1 9 1122 358 231 11 11 chr12 70446392 70446484 -50811046 + PB1D10 SINE Alu 21 112 -5 9 1122 555 247 108 11 chr12 70446489 70446665 -50810865 + B3 SINE B2 20 212 -4 9 1122 477 279 89 64 chr12 70446704 70446907 -50810623 - ID_B1 SINE B4 -1 223 16 9 1122 22 0 0 0 chr12 70447072 70447094 -50810436 + AT_rich Low_complexity Low_complexity 1 22 0 9 1122 422 316 26 9 chr12 70447123 70447238 -50810292 + RSINE1 SINE B4 9 125 -40 9 1122 30 89 0 0 chr12 70447548 70447627 -50809903 + AT_rich Low_complexity Low_complexity 1 79 0 9 1122 23 33 0 0 chr12 70447716 70447746 -50809784 + AT_rich Low_complexity Low_complexity 1 30 0 9 1122 1249 48 0 0 chr12 70447747 70447893 -50809637 + B1_Mus2 SINE Alu 1 146 -1 9 1122 27 62 0 0 chr12 70447916 70447964 -50809566 + AT_rich Low_complexity Low_complexity 1 48 0 9 1122 23 0 0 0 chr12 70448032 70448055 -50809475 + AT_rich Low_complexity Low_complexity 1 23 0 9 1122 768 204 7 20 chr12 70448070 70448220 -50809310 - B1_Mur1 SINE Alu -1 148 1 9 1122 551 248 0 8 chr12 70448254 70448372 -50809158 + PB1D10 SINE Alu 1 117 0 9 1122 278 338 88 75 chr12 70448519 70448679 -50808851 + RSINE1 SINE B4 4 165 0 9 1122 1233 70 134 0 chr12 70448752 70448923 -50808607 + B2_Mm2 SINE B2 2 195 0 9 1122 24 0 0 0 chr12 70449011 70449035 -50808495 + AT_rich Low_complexity Low_complexity 1 24 0 9 1122 1097 96 0 0 chr12 70449133 70449279 -50808251 - B1_Mus1 SINE Alu 0 148 3 9 1122 635 233 113 31 chr12 70449358 70449553 -50807977 + B3 SINE B2 1 211 -5 9 1122 1496 60 16 0 chr12 70449994 70450179 -50807351 - B2_Mm2 SINE B2 -7 188 1 9 1122 616 193 75 35 chr12 70450374 70450552 -50806978 + B2_Mm2 SINE B2 47 216 0 9 1122 301 276 41 170 chr12 70450553 70450755 -50806775 + L1M4 LINE L1 4149 4327 -1819 9 1122 952 237 14 0 chr12 70450755 70450962 -50806568 + B3 SINE B2 1 210 -6 9 1122 301 276 41 170 chr12 70450962 70451030 -50806500 + L1M4 LINE L1 4328 4384 -1762 9 1122 325 297 158 0 chr12 70451030 70451131 -50806399 + RSINE1 SINE B4 3 119 -46 9 1122 361 200 211 35 chr12 70451193 70451307 -50806223 - B1_Mus1 SINE Alu 0 148 15 9 1122 326 321 83 87 chr12 70451361 70451471 -50806059 + L1MC LINE L1 4440 4563 -1583 9 1122 1433 73 15 20 chr12 70451471 70451666 -50805864 + B2_Mm2 SINE B2 1 194 -1 9 1122 326 321 83 87 chr12 70451666 70451855 -50805675 + L1MC LINE L1 4564 4738 -1408 9 1122 238 286 16 0 chr12 70451880 70451943 -50805587 + B1F1 SINE Alu 47 110 -39 9 1122 198 0 0 0 chr12 70451959 70451981 -50805549 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 9 1122 640 253 29 91 chr12 70452178 70452387 -50805143 - B3 SINE B2 0 198 3 9 1122 804 252 61 14 chr12 70452392 70452605 -50804925 - ID_B1 SINE B4 -1 223 1 9 1122 910 167 49 16 chr12 70452764 70452947 -50804583 + B2_Mm2 SINE B2 1 189 -6 9 1122 446 301 14 49 chr12 70453006 70453149 -50804381 - B3A SINE B2 0 198 61 9 1122 357 24 0 0 chr12 70453184 70453226 -50804304 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 1122 649 224 43 31 chr12 70453498 70453659 -50803871 + B3A SINE B2 1 163 -35 9 1122 348 177 38 33 chr12 70453680 70453780 -50803750 + PB1D10 SINE Alu 1 107 -10 9 1122 581 273 0 8 chr12 70454373 70454506 -50803024 + B1_Mur1 SINE Alu 2 133 -16 9 1122 589 173 16 0 chr12 70454508 70454635 -50802895 + GA-rich Low_complexity Low_complexity 2 130 0 9 1122 21 0 0 0 chr12 70454940 70454961 -50802569 + AT_rich Low_complexity Low_complexity 1 21 0 9 1122 1102 85 0 0 chr12 70455030 70455171 -50802359 + B1_Mus2 SINE Alu 1 141 -6 9 1122 216 0 0 0 chr12 70455172 70455196 -50802334 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1122 209 159 23 0 chr12 70455256 70455300 -50802230 + GA-rich Low_complexity Low_complexity 3 47 0 9 1122 698 120 8 49 chr12 70455312 70455435 -50802095 + B1_Mus2 SINE Alu 10 127 -20 9 1122 444 269 137 34 chr12 70455947 70456093 -50801437 - RSINE1 SINE B4 -3 162 2 1 1122 404 235 163 0 chr12 70456287 70456385 -50801145 - PB1D7 SINE Alu -6 114 1 1 1122 687 180 8 0 chr12 70456489 70456611 -50800919 + B1_Mur3 SINE Alu 16 138 -11 1 1122 546 37 24 12 chr12 70456611 70456693 -50800837 + (CAA)n Simple_repeat Simple_repeat 2 84 0 1 1122 216 0 0 0 chr12 70456732 70456756 -50800774 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1122 235 304 33 50 chr12 70456772 70456893 -50800637 + RSINE1 SINE B4 19 137 -28 1 1122 237 108 0 0 chr12 70456923 70456960 -50800570 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1122 198 0 0 0 chr12 70457205 70457227 -50800303 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1122 180 0 0 0 chr12 70457862 70457882 -50799648 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1122 279 268 79 24 chr12 70458740 70458866 -50798664 + MER57D LTR ERV1 277 409 -2 1 1122 363 244 0 11 chr12 70458970 70459057 -50798473 - PB1D10 SINE Alu -7 110 25 1 1122 356 326 78 0 chr12 70459237 70459366 -50798164 - B1F SINE Alu -8 141 3 1 1122 1062 155 44 24 chr12 70460157 70460362 -50797168 - URR1B DNA MER1_type 0 225 17 1 1122 268 189 9 0 chr12 70460766 70460830 -50796700 - MLT1D LTR MaLR -55 450 396 1 1122 2602 20 0 0 chr12 70462168 70462468 -50795062 - 7SLRNA srpRNA srpRNA -14 300 1 1 1122 306 0 0 0 chr12 70463524 70463558 -50793972 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1122 228 271 153 48 chr12 70463663 70463787 -50793743 + MLT1J LTR MaLR 342 478 -34 1 1122 890 125 37 6 chr12 70463812 70463973 -50793557 - URR1A DNA MER1_type -2 224 59 1 1122 1190 48 0 27 chr12 70464118 70464268 -50793262 + B1_Mm SINE Alu 2 147 0 1 1122 279 290 53 11 chr12 70464556 70464650 -50792880 - PB1 SINE Alu -2 125 28 1 1122 413 327 28 74 chr12 70465677 70465892 -50791638 + ID_B1 SINE B4 20 224 0 1 1122 206 160 20 0 chr12 70467374 70467424 -50790106 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1122 225 277 0 44 chr12 70467539 70467607 -50789923 + ID_B1 SINE B4 93 157 -67 1 1122 189 107 0 0 chr12 70467634 70467662 -50789868 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1122 271 250 16 0 chr12 70467665 70467729 -50789801 + ID_B1 SINE B4 136 200 -24 1 1122 1177 55 0 14 chr12 70467977 70468125 -50789405 + B1_Mus2 SINE Alu 2 147 0 1 1122 365 269 84 0 chr12 70468192 70468311 -50789219 - L1MD LINE L1 -1294 4852 4724 1 1122 704 279 17 6 chr12 70468385 70468565 -50788965 - ID_B1 SINE B4 0 224 43 1 1122 303 175 0 0 chr12 70469339 70469396 -50788134 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1122 971 129 13 33 chr12 70469863 70470015 -50787515 - B1_Mur4 SINE Alu -1 149 1 1 1122 450 219 191 0 chr12 70470051 70470156 -50787374 - B1_Mur1 SINE Alu -10 139 15 1 1122 1189 68 0 0 chr12 70470180 70470327 -50787203 - B1_Mus2 SINE Alu 0 147 1 1 1122 1464 58 21 10 chr12 70470633 70470825 -50786705 - B2_Mm2 SINE B2 0 195 2 1 1122 264 294 0 10 chr12 70471365 70471468 -50786062 + MER97b DNA MER1_type? 773 874 -179 1 1122 667 230 0 7 chr12 70471458 70471598 -50785932 - B1_Mur1 SINE Alu 0 149 11 1 1122 388 313 43 74 chr12 70471598 70471689 -50785841 - ID_B1 SINE B4 0 224 1 1 1122 361 276 29 99 chr12 70471807 70471999 -50785531 + B4A SINE B4 1 187 -37 1 1122 327 225 43 33 chr12 70472007 70472099 -50785431 - PB1D7 SINE Alu -13 107 15 1 1122 31 0 0 0 chr12 70472116 70472147 -50785383 + AT_rich Low_complexity Low_complexity 1 31 0 1 1122 558 194 178 0 chr12 70472274 70472403 -50785127 + RSINE1 SINE B4 3 154 -11 1 1122 321 236 164 0 chr12 70472461 70472571 -50784959 - RSINE1 SINE B4 -37 128 1 1 1122 612 40 0 0 chr12 70477680 70477755 -50779775 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 1122 306 250 97 65 chr12 70477779 70477903 -50779627 + B1F2 SINE Alu 2 129 -20 1 1122 601 127 19 12 chr12 70478698 70478814 -50778716 - B1_Mur4 SINE Alu -23 127 14 1 1122 1096 69 14 0 chr12 70478874 70479019 -50778511 - B1_Mus1 SINE Alu 0 148 2 1 1122 230 151 247 0 chr12 70479176 70479269 -50778261 - L2a LINE L2 -18 3408 3293 1 1122 311 316 72 50 chr12 70479465 70479555 -50777975 + MER58C DNA MER1_type 27 119 -96 1 1122 375 215 0 37 chr12 70479555 70479637 -50777893 + ID4 SINE ID 5 83 0 1 1122 311 316 72 50 chr12 70479637 70479726 -50777804 + MER58C DNA MER1_type 120 210 -5 1 1122 474 241 71 0 chr12 70479929 70480041 -50777489 - PB1D7 SINE Alu 0 120 1 1 1122 30 0 0 0 chr12 70480111 70480141 -50777389 + AT_rich Low_complexity Low_complexity 1 30 0 1 1122 812 239 87 14 chr12 70480334 70480610 -50776920 - RMER17C-int LTR ERVK -10 3228 2933 1 1122 210 238 103 35 chr12 70481020 70481107 -50776423 - PB1D10 SINE Alu -1 116 24 1 1122 224 247 117 0 chr12 70481219 70481296 -50776234 + PB1D7 SINE Alu 24 109 -11 1 1122 763 156 35 7 chr12 70481319 70481461 -50776069 + B1_Mus2 SINE Alu 1 146 -1 1 1122 304 236 22 33 chr12 70481475 70481567 -50775963 + RSINE1 SINE B4 4 94 -71 1 1122 211 226 63 16 chr12 70481617 70481680 -50775850 + ID4 SINE ID 15 80 -3 1 1122 306 0 0 0 chr12 70481690 70481724 -50775806 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1122 363 225 44 198 chr12 70481838 70482065 -50775465 + B3A SINE B2 2 193 -5 1 1122 345 352 0 0 chr12 70482188 70482296 -50775234 + MER58A DNA MER1_type 11 118 -106 1 1122 522 272 41 0 chr12 70482307 70482454 -50775076 - RSINE1 SINE B4 -10 155 3 1 1122 228 259 0 0 chr12 70482799 70482857 -50774673 + T-rich Low_complexity Low_complexity 1 58 0 1 1122 797 150 0 60 chr12 70482970 70483119 -50774411 + B1_Mur3 SINE Alu 2 141 -8 1 1122 480 292 76 0 chr12 70483337 70483481 -50774049 - RSINE1 SINE B4 -10 155 1 1 1122 594 259 7 0 chr12 70483497 70483636 -50773894 - B1_Mur2 SINE Alu -8 141 2 1 1122 579 222 227 28 chr12 70483695 70483871 -50773659 - B3 SINE B2 -5 211 1 1 1122 331 345 86 5 chr12 70483989 70484187 -50773343 - MIRb SINE MIR -19 249 36 1 1122 241 246 42 84 chr12 70484632 70484774 -50772756 - Lx8 LINE L1 0 7473 7338 1 1122 1790 252 23 16 chr12 70484772 70484806 -50772724 - Lx8 LINE L1 -96 7377 7342 1 1122 486 88 0 0 chr12 70484806 70484874 -50772656 + (TAG)n Simple_repeat Simple_repeat 1 68 0 1 1122 714 194 34 14 chr12 70484874 70485020 -50772510 - B1_Mur3 SINE Alu 0 149 1 1 1122 1790 237 122 12 chr12 70485020 70485613 -50771917 - Lx8 LINE L1 -132 7341 6685 1 1122 1208 55 0 0 chr12 70486172 70486318 -50771212 - B1_Mus2 SINE Alu 0 147 2 1 1122 22 80 0 0 chr12 70486460 70486510 -50771020 + AT_rich Low_complexity Low_complexity 1 50 0 1 1122 930 85 0 0 chr12 70487217 70487346 -50770184 + (TG)n Simple_repeat Simple_repeat 1 129 0 1 1122 290 301 0 35 chr12 70487415 70487501 -50770029 - B1F1 SINE Alu -20 129 47 1 1122 231 36 0 0 chr12 70487550 70487578 -50769952 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1122 261 273 32 54 chr12 70487806 70487820 -50769710 - RSINE1 SINE B4 -73 92 2 1 1122 463 165 0 0 chr12 70487820 70487899 -50769631 - B3A SINE B2 -119 79 1 1 1122 405 0 0 0 chr12 70487906 70487951 -50769579 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1122 261 281 83 0 chr12 70487968 70488089 -50769441 - RSINE1 SINE B4 -24 141 11 1 1122 1174 74 0 0 chr12 70488203 70488351 -50769179 - B1_Mus1 SINE Alu 0 148 1 1 1122 363 200 80 172 chr12 70488474 70488637 -50768893 - B1F2 SINE Alu -1 148 1 1 1122 516 247 132 16 chr12 70488679 70488868 -50768662 - ID_B1 SINE B4 -13 211 1 1 1122 21 0 0 0 chr12 70488868 70488889 -50768641 + AT_rich Low_complexity Low_complexity 1 21 0 1 1122 580 227 0 0 chr12 70488892 70489011 -50768519 - PB1D9 SINE Alu 0 120 2 1 1122 183 80 0 0 chr12 70489028 70489053 -50768477 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1 1122 475 219 52 9 chr12 70489058 70489173 -50768357 + PB1D9 SINE Alu 1 120 0 1 1122 819 193 52 43 chr12 70489188 70489399 -50768131 - B3 SINE B2 0 216 4 1 1122 265 167 139 93 chr12 70489423 70489509 -50768021 + B1_Mus1 SINE Alu 3 92 -56 1 1122 441 0 0 0 chr12 70489809 70489858 -50767672 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 1 1122 1425 63 17 0 chr12 70489858 70490033 -50767497 - B2_Mm2 SINE B2 -17 178 1 1 1122 796 167 0 83 chr12 70490059 70490216 -50767314 - B1_Mur1 SINE Alu -1 148 5 1 1122 219 274 32 0 chr12 70490448 70490510 -50767020 + MIR SINE MIR 199 262 0 1 1122 304 279 12 0 chr12 70490596 70490682 -50766848 + L1M4 LINE L1 5545 5631 -553 1 1122 389 248 117 29 chr12 70491043 70491180 -50766350 - B1F1 SINE Alu 0 149 1 1 1122 216 247 27 27 chr12 70491834 70491909 -50765621 - PB1D10 SINE Alu 0 117 43 1 1122 255 220 152 0 chr12 70492012 70492071 -50765459 - PB1D7 SINE Alu -12 108 41 1 1122 5517 113 32 34 chr12 70492402 70493310 -50764220 + RMER17A2 LTR ERVK 1 906 0 1 1122 357 289 44 7 chr12 70493359 70493495 -50764035 + B1F SINE Alu 1 141 -8 1 1122 249 221 75 38 chr12 70494836 70494916 -50762614 - B1F SINE Alu -13 136 54 1 1122 186 365 96 76 chr12 70494961 70495118 -50762412 - MIR3 SINE MIR -10 198 39 1 1122 1018 293 87 55 chr12 70495400 70495771 -50761759 - MLT1F LTR MaLR 0 548 142 1 1122 423 222 61 0 chr12 70495771 70495870 -50761660 + PB1D7 SINE Alu 5 109 -11 1 1122 311 0 0 25 chr12 70495871 70495911 -50761619 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1122 1018 293 87 55 chr12 70495911 70496064 -50761466 - MLT1F LTR MaLR -407 141 5 1 1122 2246 125 26 29 chr12 70496149 70496528 -50761002 - ORR1C1 LTR MaLR 0 378 1 1 1122 477 275 9 0 chr12 70497093 70497202 -50760328 - PB1D10 SINE Alu -7 110 1 1 1122 229 288 0 0 chr12 70497230 70497289 -50760241 - ID4 SINE ID -24 59 1 1 1122 504 231 35 1 chr12 70497561 70497689 -50759841 + B4A SINE B4 1 132 -160 1 1122 231 319 14 0 chr12 70497709 70497781 -50759749 + L1M5 LINE L1 5540 5612 -832 1 1122 24 0 0 0 chr12 70498011 70498035 -50759495 + AT_rich Low_complexity Low_complexity 1 24 0 1 1122 1324 151 9 9 chr12 70498035 70498249 -50759281 - B3 SINE B2 -1 215 2 1 1122 449 254 57 21 chr12 70498372 70498513 -50759017 - RLTR42-int LTR ERVK -4122 1400 1255 1 1122 245 287 46 0 chr12 70498644 70498731 -50758799 + L1M5 LINE L1 5692 5782 -662 1 1122 7935 26 0 0 chr12 70498731 70499999 -50757531 + L1Md_T LINE L1 4992 6259 -323 1 1122 2640 53 0 0 chr12 70500000 70500322 -50757208 + L1Md_A LINE L1 6261 6582 0 1 1122 182 62 31 0 chr12 70500422 70500454 -50757076 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1122 772 278 63 13 chr12 70500482 70500785 -50756745 + L1ME2z LINE L1 5879 6196 -248 3 1122 459 217 70 98 chr12 70500952 70501095 -50756435 - ORR1D2 LTR MaLR -235 139 1 4 1122 256 250 0 38 chr12 70501871 70501950 -50755580 + CT-rich Low_complexity Low_complexity 3 78 0 5 1122 742 265 0 12 chr12 70502327 70502491 -50755039 + RSINE1 SINE B4 2 163 -2 6 1122 1299 79 0 0 chr12 70502584 70502761 -50754769 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 7 1122 1222 104 17 0 chr12 70502778 70502951 -50754579 + B2_Mm2 SINE B2 1 176 -19 8 1122 27 0 0 0 chr12 70502968 70502995 -50754535 + AT_rich Low_complexity Low_complexity 1 27 0 9 1122 459 269 150 32 chr12 70502995 70503241 -50754289 - LTR16D LTR ERVL -46 605 331 1 1122 253 270 71 115 chr12 70503308 70503421 -50754109 - LTR16D LTR ERVL -419 232 125 1 1122 335 21 43 0 chr12 70503428 70503475 -50754055 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1122 2626 91 152 2 chr12 70503678 70504139 -50753391 - RLTR47_MM LTR ERV1 0 532 3 1 1122 1139 129 103 5 chr12 70505762 70505957 -50751573 - URR1A DNA MER1_type -12 214 1 1 1122 24 53 0 0 chr12 70506077 70506115 -50751415 + AT_rich Low_complexity Low_complexity 1 38 0 1 1122 1035 129 0 0 chr12 70506201 70506459 -50751071 + (TG)n Simple_repeat Simple_repeat 1 258 0 1 1122 255 274 27 0 chr12 70506562 70506635 -50750895 - ID4_ SINE ID -7 76 2 1 1122 549 248 0 0 chr12 70507155 70507264 -50750266 + PB1D7 SINE Alu 1 109 -11 1 1122 559 264 28 35 chr12 70507511 70507656 -50749874 + RSINE1 SINE B4 10 153 -12 1 1122 270 0 0 0 chr12 70507671 70507701 -50749829 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1122 1058 234 5 0 chr12 70508231 70508445 -50749085 - B3 SINE B2 0 216 2 2 1122 3466 70 0 0 chr12 70508569 70509010 -50748520 - L1Md_T LINE L1 0 6582 6142 2 1122 619 250 76 0 chr12 70509185 70509317 -50748213 + RSINE1 SINE B4 8 149 -16 2 1122 456 19 0 0 chr12 70509323 70509376 -50748154 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1122 256 64 102 41 chr12 70509747 70509796 -50747734 - B1F SINE Alu -3 146 95 2 1122 386 270 18 18 chr12 70509843 70509956 -50747574 - L1MB3 LINE L1 -356 5827 5715 2 1122 1130 305 76 12 chr12 70509986 70510397 -50747133 - MLT2B1 LTR ERVL -13 542 101 2 1122 249 296 28 14 chr12 70510397 70510469 -50747061 + ID4 SINE ID 1 73 -10 2 1122 515 271 3 47 chr12 70510553 70510698 -50746832 + B1F SINE Alu 1 140 -7 2 1122 393 22 0 0 chr12 70510707 70510753 -50746777 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2 1122 459 0 0 0 chr12 70510753 70510804 -50746726 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1122 584 224 0 65 chr12 70510805 70510929 -50746601 - B1_Mur1 SINE Alu -28 121 6 3 1122 1267 41 0 0 chr12 70510988 70511135 -50746395 - B1_Mus1 SINE Alu 0 148 2 3 1122 324 182 15 0 chr12 70511135 70511201 -50746329 - L1MB3 LINE L1 -544 5639 5573 2 1122 403 257 97 9 chr12 70511288 70511402 -50746128 - B1F SINE Alu -6 143 20 3 1122 30 27 0 0 chr12 70511432 70511469 -50746061 + AT_rich Low_complexity Low_complexity 1 37 0 3 1122 210 258 30 0 chr12 70512213 70512279 -50745251 + MIR SINE MIR 38 105 -157 3 1122 407 153 134 35 chr12 70512292 70512395 -50745135 + PB1D9 SINE Alu 9 118 -2 3 1122 937 208 66 5 chr12 70512403 70512601 -50744929 + B3 SINE B2 1 210 -6 3 1122 30 45 0 0 chr12 70512608 70512652 -50744878 + AT_rich Low_complexity Low_complexity 1 44 0 3 1122 489 261 84 7 chr12 70512658 70512678 -50744852 - RSINE1 SINE B4 -10 155 130 3 1122 321 26 0 0 chr12 70512678 70512716 -50744814 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1122 489 261 84 7 chr12 70512716 70512838 -50744692 - RSINE1 SINE B4 -36 129 3 3 1122 252 0 0 0 chr12 70512895 70512923 -50744607 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 4 1122 801 167 23 0 chr12 70512923 70513055 -50744475 - B1_Mur1 SINE Alu -14 135 1 4 1122 264 59 0 0 chr12 70513514 70513548 -50743982 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1122 435 277 25 67 chr12 70513635 70513755 -50743775 - PB1D10 SINE Alu 0 117 3 4 1122 222 37 0 0 chr12 70513979 70514006 -50743524 + (TGG)n Simple_repeat Simple_repeat 2 28 0 4 1122 862 163 0 0 chr12 70514952 70515081 -50742449 - B1_Mus1 SINE Alu -19 129 1 4 1122 622 337 20 54 chr12 70515117 70515299 -50742231 + B3A SINE B2 1 181 -17 4 1122 207 0 0 0 chr12 70515299 70515322 -50742208 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1122 622 337 20 54 chr12 70515322 70515343 -50742187 + B3A SINE B2 182 197 -1 4 1122 189 107 0 0 chr12 70515631 70515659 -50741871 + (CTTG)n Simple_repeat Simple_repeat 4 31 0 4 1122 584 181 67 8 chr12 70515659 70515793 -50741737 - B1F2 SINE Alu -7 142 1 5 1122 230 238 100 116 chr12 70515920 70515972 -50741558 - B2_Mm2 SINE B2 -8 187 1 5 1122 433 287 51 14 chr12 70515972 70516110 -50741420 - RSINE1 SINE B4 -21 144 2 5 1122 1851 148 118 30 chr12 70516166 70516571 -50740959 - RMER10A LTR ERVL -1 441 1 5 140 741 260 72 76 chr12 70516612 70516862 -50740668 - B4A SINE B4 -16 276 28 5 1123 307 383 0 0 chr12 70516864 70516984 -50740546 - MLT1F LTR MaLR -399 149 30 5 1123 568 200 9 0 chr12 70516996 70517106 -50740424 + ID_B1 SINE B4 105 215 -9 5 1123 288 0 0 0 chr12 70517114 70517146 -50740384 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 5 1123 268 278 42 0 chr12 70517164 70517236 -50740294 + ID4 SINE ID 2 76 -7 5 1123 414 0 0 0 chr12 70517240 70517286 -50740244 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1123 884 163 0 0 chr12 70517521 70517662 -50739868 + ORR1B2 LTR MaLR 227 367 0 6 1123 372 296 46 39 chr12 70518127 70518257 -50739273 + MIRb SINE MIR 118 248 -20 6 1123 386 196 11 0 chr12 70518269 70518361 -50739169 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 1123 914 236 14 9 chr12 70519578 70519796 -50737734 - ID_B1 SINE B4 -2 222 4 6 1123 352 286 16 74 chr12 70520476 70520597 -50736933 - PB1D10 SINE Alu -1 116 3 6 1123 218 29 28 56 chr12 70521628 70521664 -50735866 + B1_Mur4 SINE Alu 66 100 -50 6 1123 414 0 0 0 chr12 70521907 70521953 -50735577 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1123 371 203 0 48 chr12 70521991 70522074 -50735456 - B4A SINE B4 -2 290 212 6 1123 1013 133 198 11 chr12 70522079 70522261 -50735269 + B3 SINE B2 1 216 0 6 1123 458 342 21 5 chr12 70522437 70522625 -50734905 - Lx7 LINE L1 -401 7295 7105 6 1123 447 287 0 24 chr12 70522684 70522809 -50734721 - Lx7 LINE L1 -686 7010 6889 6 1123 708 290 78 0 chr12 70522841 70523034 -50734496 - B4A SINE B4 -78 214 7 6 1123 468 210 62 55 chr12 70523113 70523259 -50734271 - B1F SINE Alu -1 148 2 7 1123 421 292 42 0 chr12 70523296 70523416 -50734114 + RSINE1 SINE B4 14 138 -27 7 1123 186 43 0 0 chr12 70523435 70523458 -50734072 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1123 508 180 79 0 chr12 70524593 70524682 -50732848 - PB1D10 SINE Alu -21 96 1 7 1123 265 172 113 65 chr12 70524629 70524691 -50732839 - B4 SINE B4 -147 145 81 7 1123 617 287 6 51 chr12 70524717 70524875 -50732655 - RSINE1 SINE B4 -9 156 6 7 1123 254 146 20 20 chr12 70524878 70524927 -50732603 + T-rich Low_complexity Low_complexity 1 49 0 7 1123 958 148 11 0 chr12 70524927 70525103 -50732427 + CT-rich Low_complexity Low_complexity 2 179 0 7 1123 471 202 5 68 chr12 70525103 70525294 -50732236 - RMER17C LTR ERVK -135 275 97 7 1123 336 75 0 36 chr12 70526269 70526324 -50731206 - HAL1-3A_ME LINE L1 -830 2028 1976 7 1123 261 299 0 0 chr12 70526371 70526498 -50731032 + (TG)n Simple_repeat Simple_repeat 2 128 0 8 1123 520 238 0 17 chr12 70526470 70526645 -50730885 + (TATATG)n Simple_repeat Simple_repeat 6 177 0 8 1123 338 224 15 0 chr12 70526677 70526744 -50730786 - ID4_ SINE ID -13 70 3 8 1123 230 424 69 75 chr12 70526833 70527152 -50730378 - MamGypLTR1b LTR Gypsy -154 628 312 8 1123 1032 32 8 0 chr12 70527267 70527393 -50730137 + B1_Mus1 SINE Alu 22 148 0 8 1123 504 198 50 0 chr12 70527426 70527527 -50730003 + PB1D7 SINE Alu 1 106 -14 8 1123 27 29 0 0 chr12 70527681 70527715 -50729815 + AT_rich Low_complexity Low_complexity 1 34 0 8 1123 2204 184 123 42 chr12 70528294 70528789 -50728741 - RMER15 LTR ERVL -14 561 27 8 1123 301 180 0 0 chr12 70528847 70528897 -50728633 - RMER15 LTR ERVL -525 50 1 8 1123 266 314 37 120 chr12 70528972 70529189 -50728341 - MLT1K LTR MaLR -8 587 389 8 1123 1119 55 0 33 chr12 70529581 70529731 -50727799 - B1_Mm SINE Alu -1 146 2 8 1123 929 232 38 10 chr12 70529783 70529992 -50727538 - B3 SINE B2 -1 215 1 9 1123 452 312 56 0 chr12 70530007 70530132 -50727398 - ID_B1 SINE B4 -15 209 78 9 1123 188 338 70 0 chr12 70530180 70530251 -50727279 - L2c LINE L2 -45 3342 3267 9 1123 354 198 194 20 chr12 70530414 70530512 -50727018 + PB1D9 SINE Alu 1 115 -5 9 1123 307 301 85 28 chr12 70530764 70530870 -50726660 - PB1D7 SINE Alu -1 119 8 9 1123 2101 104 31 12 chr12 70531066 70531386 -50726144 + ORR1A3 LTR MaLR 1 326 0 9 1123 407 172 21 1 chr12 70532021 70532089 -50725441 - PB1D7 SINE Alu -8 141 51 9 1123 1208 91 0 6 chr12 70532111 70532288 -50725242 + (TCC)n Simple_repeat Simple_repeat 2 177 0 9 1123 236 342 13 0 chr12 70532393 70532469 -50725061 - B4 SINE B4 -209 83 7 9 1123 198 0 0 0 chr12 70532524 70532546 -50724984 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 9 1123 237 83 0 0 chr12 70532546 70532581 -50724949 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1123 290 284 10 21 chr12 70532876 70532973 -50724557 - MER96B DNA hAT -265 152 57 1 1123 1522 153 236 6 chr12 70533616 70533773 -50723757 + RMER10B LTR ERVL 3 168 -230 1 1123 453 36 0 0 chr12 70533773 70533828 -50723702 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1123 1522 153 236 6 chr12 70533828 70533992 -50723538 + RMER10B LTR ERVL 169 397 -1 1 1123 754 204 59 136 chr12 70533992 70534111 -50723419 - B3 SINE B2 -18 198 76 1 1123 2387 116 37 37 chr12 70534111 70534488 -50723042 - RLTR14 LTR ERV1 -3 379 3 1 1123 754 204 59 136 chr12 70534488 70534583 -50722947 - B3 SINE B2 -141 75 1 1 1123 338 222 0 11 chr12 70535044 70535135 -50722395 + CT-rich Low_complexity Low_complexity 2 91 0 1 1123 849 184 7 7 chr12 70535143 70535291 -50722239 - B1_Mus1 SINE Alu 0 148 1 1 1123 247 279 25 0 chr12 70535299 70535378 -50722152 + CT-rich Low_complexity Low_complexity 2 82 0 1 1123 320 292 38 0 chr12 70535380 70535486 -50722044 - PB1D9 SINE Alu -6 114 5 1 1123 309 227 40 0 chr12 70535977 70536052 -50721478 + ID4 SINE ID 3 80 -3 1 1123 677 179 143 40 chr12 70536064 70536239 -50721291 + B3A SINE B2 2 194 -4 1 1123 1262 34 0 0 chr12 70536310 70536457 -50721073 + B1_Mus2 SINE Alu 1 147 0 1 1123 446 267 43 0 chr12 70536820 70536936 -50720594 + ID_B1 SINE B4 94 214 -10 1 1123 549 93 0 11 chr12 70537693 70537780 -50719750 - B1_Mur4 SINE Alu 0 150 65 1 1123 261 0 0 0 chr12 70538146 70538175 -50719355 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1123 1283 27 0 7 chr12 70538628 70538776 -50718754 + B1_Mm SINE Alu 1 147 0 1 1123 384 111 0 0 chr12 70539039 70539111 -50718419 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1123 397 193 62 132 chr12 70539224 70539345 -50718185 - B1F SINE Alu -8 119 1 1 1123 259 271 40 151 chr12 70539234 70539360 -50718170 - ID_B1 SINE B4 -45 179 68 1 1123 270 0 0 0 chr12 70539480 70539510 -50718020 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1123 1401 279 53 84 chr12 70539571 70540145 -50717385 + L1MB4 LINE L1 3501 4079 -2061 1 1123 1168 51 0 0 chr12 70540145 70540282 -50717248 + B1_Mus1 SINE Alu 2 138 -10 1 1123 243 0 0 0 chr12 70540282 70540309 -50717221 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1123 1401 279 53 84 chr12 70540309 70540493 -50717037 + L1MB4 LINE L1 4080 4235 -1905 1 1123 623 153 125 37 chr12 70540493 70540629 -50716901 + B1_Mus1 SINE Alu 1 148 0 1 1123 240 59 0 0 chr12 70540656 70540690 -50716840 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1123 758 221 36 0 chr12 70540750 70540890 -50716640 + ID_B1 SINE B4 33 177 -47 1 1123 423 0 0 0 chr12 70540894 70540941 -50716589 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1123 273 146 0 0 chr12 70540941 70540989 -50716541 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1123 917 270 39 21 chr12 70541081 70541418 -50716112 + L1MB4 LINE L1 4355 4697 -1443 1 1123 368 303 51 13 chr12 70541570 70541643 -50715887 + L1MB4 LINE L1 5567 5641 -539 1 1123 387 0 0 0 chr12 70541643 70541686 -50715844 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1123 368 303 51 13 chr12 70541686 70541769 -50715761 + L1MB4 LINE L1 5642 5729 -451 1 1123 614 239 55 80 chr12 70541927 70542037 -50715493 + MTD LTR MaLR 1 105 -314 1 1123 1158 62 14 0 chr12 70542037 70542181 -50715349 - B1_Mm SINE Alu 0 147 2 1 1123 614 239 55 80 chr12 70542181 70542270 -50715260 + MTD LTR MaLR 106 195 -224 1 1123 335 233 33 0 chr12 70542285 70542405 -50715125 + (TAGA)n Simple_repeat Simple_repeat 1 124 0 1 1123 258 159 0 0 chr12 70542406 70542475 -50715055 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 1 1123 360 279 17 0 chr12 70542501 70542794 -50714736 + (TAGA)n Simple_repeat Simple_repeat 1 298 0 1 1123 670 230 198 5 chr12 70542796 70542988 -50714542 + MTD LTR MaLR 191 419 0 1 1123 676 257 26 64 chr12 70543001 70543234 -50714296 + L1MB4 LINE L1 5954 6177 -3 1 1123 539 283 0 8 chr12 70543839 70543960 -50713570 - ID_B1 SINE B4 -12 212 93 1 1123 557 304 6 0 chr12 70545015 70545173 -50712357 - RSINE1 SINE B4 -4 161 3 1 1123 248 178 89 0 chr12 70545189 70545234 -50712296 - ID SINE ID -146 78 30 1 1123 21 36 0 0 chr12 70545341 70545369 -50712161 + AT_rich Low_complexity Low_complexity 1 28 0 1 1123 455 295 80 16 chr12 70545384 70545696 -50711834 - L1MC4a LINE L1 -1957 5925 5600 1 1123 795 143 58 29 chr12 70545736 70545873 -50711657 - B1_Mur4 SINE Alu -7 143 3 1 1123 979 228 42 0 chr12 70545996 70546189 -50711341 - B3 SINE B2 0 216 16 1 1123 231 318 52 21 chr12 70546736 70546929 -50710601 - L1MC4a LINE L1 -993 5153 4955 1 1123 450 0 0 0 chr12 70548011 70548061 -50709469 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1123 219 36 0 0 chr12 70548668 70548696 -50708834 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1123 321 26 0 0 chr12 70548731 70548769 -50708761 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1123 244 265 0 0 chr12 70549841 70549890 -50707640 + polypurine Low_complexity Low_complexity 1 49 0 1 1123 330 163 121 10 chr12 70549954 70550053 -50707477 - Lx5 LINE L1 0 7050 6941 1 1123 4077 146 5 5 chr12 70550057 70550706 -50706824 + L1_Mur2 LINE L1 4980 5628 -249 1 1123 851 151 36 16 chr12 70551059 70551229 -50706301 + B3 SINE B2 3 186 -9 1 1123 603 303 114 4 chr12 70551256 70551518 -50706012 - B4A SINE B4 -1 291 1 1 1123 195 100 0 0 chr12 70551793 70551823 -50705707 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1123 357 305 66 37 chr12 70553505 70553641 -50703889 - MLT1H2 LTR MaLR -4 485 346 1 1123 203 32 65 0 chr12 70553652 70553683 -50703847 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1123 279 265 70 35 chr12 70553737 70553823 -50703707 - MLT1H2 LTR MaLR -307 284 196 1 1123 234 314 45 112 chr12 70553803 70553982 -50703548 - MLT1H2 LTR MaLR -306 243 77 1 1123 2188 133 42 19 chr12 70555213 70555572 -50701958 - ORR1B2 LTR MaLR 0 367 1 1 1123 375 23 0 0 chr12 70555854 70555898 -50701632 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1123 238 299 35 0 chr12 70555915 70556002 -50701528 + RLTR15 LTR ERVK 164 253 -106 1 1123 187 31 0 59 chr12 70556050 70556084 -50701446 + (CACCC)n Simple_repeat Simple_repeat 3 34 0 1 1123 360 43 0 0 chr12 70556926 70556972 -50700558 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1123 321 47 0 0 chr12 70557001 70557044 -50700486 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1123 270 0 0 0 chr12 70557044 70557073 -50700457 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1123 605 338 30 15 chr12 70557090 70557360 -50700170 - B4A SINE B4 -15 277 4 1 1123 249 274 53 0 chr12 70557434 70557529 -50700001 + G-rich Low_complexity Low_complexity 5 104 0 1 1123 189 242 29 57 chr12 70558188 70558258 -50699272 - L2 LINE L2 -2632 787 720 1 1123 318 26 0 0 chr12 70558341 70558380 -50699150 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1123 237 136 0 22 chr12 70559831 70559876 -50697654 + MLT1F-int LTR MaLR 657 700 -789 1 1123 498 108 0 0 chr12 70559904 70559978 -50697552 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1123 622 228 73 0 chr12 70560082 70560218 -50697312 - B1_Mur1 SINE Alu -2 147 2 1 1123 311 316 99 5 chr12 70560219 70560410 -50697120 - L1MB4 LINE L1 -40 6140 5932 1 1123 234 62 0 0 chr12 70560411 70560443 -50697087 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1123 530 267 64 39 chr12 70560461 70560742 -50696788 + B4A SINE B4 5 292 0 1 1123 476 161 42 18 chr12 70560752 70560917 -50696613 + (CA)n Simple_repeat Simple_repeat 2 170 0 1 1123 529 175 49 10 chr12 70560938 70561229 -50696301 + (CA)n Simple_repeat Simple_repeat 1 302 0 1 1123 209 250 25 19 chr12 70561229 70561388 -50696142 + (CATATA)n Simple_repeat Simple_repeat 1 160 0 1 1123 437 213 18 6 chr12 70561413 70561578 -50695952 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 1123 921 301 72 20 chr12 70561578 70561924 -50695606 - LTR40a LTR ERVL -150 369 6 1 1123 282 68 102 0 chr12 70562135 70562194 -50695336 + A-rich Low_complexity Low_complexity 2 66 0 1 1123 207 0 0 0 chr12 70562449 70562472 -50695058 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1123 272 270 28 83 chr12 70562484 70562593 -50694937 - PB1D10 SINE Alu 0 117 15 1 1123 252 0 0 0 chr12 70563407 70563435 -50694095 + (TGG)n Simple_repeat Simple_repeat 2 29 0 1 1123 258 246 35 0 chr12 70564093 70564150 -50693380 - MIRc SINE MIR -130 138 80 1 1123 207 0 0 0 chr12 70564554 70564577 -50692953 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1123 1074 37 0 15 chr12 70564577 70564714 -50692816 - B1_Mus2 SINE Alu 0 147 13 1 1123 432 167 0 156 chr12 70564614 70564742 -50692788 - MT2B LTR ERVL -337 264 157 1 1123 3056 128 46 6 chr12 70565118 70565620 -50691910 - RLTR28 LTR ERVL -2 522 1 1 1123 483 260 0 0 chr12 70566476 70566572 -50690958 - PB1D10 SINE Alu -19 98 3 1 1123 585 129 0 0 chr12 70567486 70567602 -50689928 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 1123 352 141 15 15 chr12 70567602 70567667 -50689863 - HAL1-3A_ME LINE L1 -831 2027 1963 1 1123 287 251 94 34 chr12 70567697 70567795 -50689735 - PB1D7 SINE Alu -5 115 1 1 1123 1281 190 73 40 chr12 70567969 70568270 -50689260 - RMER15 LTR ERVL -5 570 260 1 1123 756 260 53 92 chr12 70568457 70568677 -50688853 + B4A SINE B4 1 222 -70 1 1123 1250 209 5 0 chr12 70568677 70568892 -50688638 + B3 SINE B2 1 216 0 1 1123 756 260 53 92 chr12 70568892 70568955 -50688575 + B4A SINE B4 223 273 -19 1 1123 243 114 0 0 chr12 70568978 70569022 -50688508 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1123 274 321 44 18 chr12 70569247 70569361 -50688169 + MIRm SINE MIR 37 153 -123 1 1123 562 285 58 132 chr12 70570298 70570609 -50686921 - B4A SINE B4 0 292 5 1 1123 253 330 109 81 chr12 70570867 70571006 -50686524 + MLT2B3 LTR ERVL 338 471 -83 1 1123 807 71 47 12 chr12 70571006 70571178 -50686352 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1 1123 253 330 109 81 chr12 70571178 70571200 -50686330 + MLT2B3 LTR ERVL 472 497 -57 1 1123 867 59 53 0 chr12 70571200 70571369 -50686161 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1 1123 253 330 109 81 chr12 70571369 70571417 -50686113 + MLT2B3 LTR ERVL 498 553 -1 1 1123 366 238 36 0 chr12 70571592 70571676 -50685854 + B4A SINE B4 6 92 -200 1 1123 213 246 29 44 chr12 70571691 70571759 -50685771 + GA-rich Low_complexity Low_complexity 4 70 0 1 1123 213 39 0 0 chr12 70571786 70571812 -50685718 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1123 521 328 149 0 chr12 70571819 70571993 -50685537 + B4A SINE B4 85 284 -8 1 1123 261 0 0 0 chr12 70572044 70572073 -50685457 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1123 2094 150 13 52 chr12 70572380 70572766 -50684764 + ORR1D1 LTR MaLR 1 371 -3 2 1123 34 42 0 0 chr12 70573347 70573395 -50684135 + AT_rich Low_complexity Low_complexity 1 48 0 2 1123 444 67 0 0 chr12 70573830 70573890 -50683640 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1123 307 172 0 0 chr12 70574028 70574086 -50683444 - MLT1A1 LTR MaLR -9 399 342 2 1123 378 218 8 144 chr12 70574096 70574214 -50683316 + RSINE1 SINE B4 64 165 0 2 1123 711 179 0 0 chr12 70574214 70574354 -50683176 + (CA)n Simple_repeat Simple_repeat 1 140 0 2 1123 484 212 15 10 chr12 70574578 70574693 -50682837 - B1F SINE Alu 0 149 42 2 1123 450 0 0 0 chr12 70576346 70576396 -50681134 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1123 344 271 82 8 chr12 70576867 70577001 -50680529 - MER103 DNA DNA -4 162 19 2 1123 274 0 48 24 chr12 70577454 70577496 -50680034 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 2 1123 928 170 0 0 chr12 70578142 70578283 -50679247 + B1_Mur4 SINE Alu 2 142 -8 2 1123 390 301 26 9 chr12 70578588 70578702 -50678828 + PB1D10 SINE Alu 1 116 -1 2 1123 1217 42 7 0 chr12 70579810 70579953 -50677577 + B1_Mus1 SINE Alu 3 146 -2 2 1123 218 136 23 0 chr12 70579953 70579997 -50677533 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2 1123 560 111 0 11 chr12 70580015 70580106 -50677424 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 2 1123 226 135 0 51 chr12 70580545 70580584 -50676946 - PB1D10 SINE Alu -3 124 77 2 1123 232 303 59 20 chr12 70580630 70580731 -50676799 - B2_Mm2 SINE B2 -90 105 1 2 1123 269 260 78 0 chr12 70580655 70580732 -50676798 - ID SINE ID -141 83 1 2 1123 1114 269 108 33 chr12 70581105 70581324 -50676206 + L1MA5 LINE L1 5534 5779 -521 2 1123 524 205 0 0 chr12 70581324 70581407 -50676123 + ID4 SINE ID 1 83 0 2 1123 1114 269 108 33 chr12 70581407 70581759 -50675771 + L1MA5 LINE L1 5780 6147 -153 2 1123 869 161 35 0 chr12 70581769 70581912 -50675618 - B1_Mur2 SINE Alu 0 149 2 2 1123 1279 34 0 0 chr12 70581943 70582089 -50675441 + B1_Mm SINE Alu 2 147 0 2 1123 627 282 117 0 chr12 70582107 70582295 -50675235 - ID_B1 SINE B4 -13 211 2 2 1123 444 200 43 32 chr12 70582977 70583070 -50674460 - ID_B1 SINE B4 -1 223 130 2 1123 434 212 148 20 chr12 70583558 70583659 -50673871 - PB1D10 SINE Alu -1 116 3 2 1123 1072 286 103 14 chr12 70583933 70584281 -50673249 - MTE2b LTR MaLR 0 379 1 2 1123 639 249 62 57 chr12 70584802 70584994 -50672536 + B3A SINE B2 5 197 -1 2 1123 1425 167 151 14 chr12 70585511 70585796 -50671734 - MTC LTR MaLR -97 324 1 2 1123 260 247 129 0 chr12 70586268 70586353 -50671177 - MLT1J LTR MaLR -385 127 32 2 1123 311 80 0 39 chr12 70586353 70586383 -50671147 + (GAA)n Simple_repeat Simple_repeat 1 30 0 2 1123 1116 128 0 0 chr12 70586383 70586562 -50670968 + (GGA)n Simple_repeat Simple_repeat 2 180 0 2 1123 311 80 0 39 chr12 70586562 70586583 -50670947 + (GAA)n Simple_repeat Simple_repeat 1 20 0 2 1123 264 288 73 46 chr12 70587222 70587331 -50670199 - MIRm SINE MIR -8 268 157 2 1123 219 107 0 67 chr12 70587535 70587595 -50669935 + G-rich Low_complexity Low_complexity 5 60 0 2 1123 315 0 0 0 chr12 70587887 70587922 -50669608 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 2 1123 1120 289 114 43 chr12 70589009 70589587 -50667943 + Lx9 LINE L1 7007 7625 -19 2 1123 721 178 0 16 chr12 70589621 70589674 -50667856 + polypurine Low_complexity Low_complexity 1 51 0 2 1123 1389 61 0 0 chr12 70589674 70589854 -50667676 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1123 721 178 0 16 chr12 70589854 70589983 -50667547 + GA-rich Low_complexity Low_complexity 52 180 0 2 1123 760 197 28 55 chr12 70589998 70590143 -50667387 + B1_Mur2 SINE Alu 3 143 -6 2 1123 243 61 0 0 chr12 70590166 70590199 -50667331 + (GGA)n Simple_repeat Simple_repeat 3 35 0 2 1123 329 187 0 13 chr12 70590369 70590445 -50667085 + (CAT)n Simple_repeat Simple_repeat 3 77 0 2 1123 840 270 185 8 chr12 70591495 70591738 -50665792 + B4A SINE B4 3 288 -4 2 1123 328 331 107 31 chr12 70592870 70593066 -50664464 - MIR SINE MIR -41 221 11 2 1123 224 185 19 0 chr12 70593435 70593489 -50664041 + B1F1 SINE Alu 40 94 -55 2 1123 640 252 13 26 chr12 70594027 70594178 -50663352 - B1F2 SINE Alu 0 149 1 2 1123 274 333 0 0 chr12 70594250 70594325 -50663205 + B1F SINE Alu 66 140 -9 2 1123 444 292 90 7 chr12 70594359 70594504 -50663026 + RSINE1 SINE B4 3 159 -6 2 1123 254 305 22 89 chr12 70594601 70594691 -50662839 + PB1D10 SINE Alu 15 98 -19 2 1123 544 246 38 15 chr12 70594692 70594824 -50662706 + RSINE1 SINE B4 2 136 -29 2 1123 759 223 0 0 chr12 70595213 70595343 -50662187 + RSINE1 SINE B4 2 131 -34 2 1123 387 341 110 31 chr12 70595417 70595671 -50661859 - MLT1H LTR MaLR -275 274 1 2 1123 387 329 74 14 chr12 70597112 70597260 -50660270 - MLT1A1 LTR MaLR -5 403 247 2 1123 412 295 79 68 chr12 70597333 70597613 -50659917 + B4 SINE B4 2 284 -8 2 1123 877 208 121 11 chr12 70597647 70597837 -50659693 + B3 SINE B2 1 211 -5 2 1123 345 257 110 41 chr12 70597892 70598038 -50659492 - MLT1A1 LTR MaLR -252 156 1 2 1123 242 282 90 0 chr12 70598480 70598558 -50658972 - MLT1H LTR MaLR 0 549 465 2 1123 279 273 57 0 chr12 70598971 70599059 -50658471 - MER63D DNA AcHobo -650 411 319 2 1123 757 250 96 25 chr12 70599074 70599271 -50658259 - B3 SINE B2 -5 211 1 2 1123 216 0 0 0 chr12 70599285 70599309 -50658221 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1123 1046 216 54 0 chr12 70599317 70599521 -50658009 - B3 SINE B2 0 216 2 2 1123 236 365 143 23 chr12 70599724 70600024 -50657506 + L3 LINE CR1 4152 4487 -2 2 1123 590 259 130 87 chr12 70600886 70601184 -50656346 + MLT1A0 LTR MaLR 19 329 -36 2 1123 304 281 33 22 chr12 70601184 70601275 -50656255 + B4A SINE B4 1 92 -200 2 1123 480 35 0 0 chr12 70601539 70601597 -50655933 + (GGGGA)n Simple_repeat Simple_repeat 4 61 0 2 1123 641 341 81 31 chr12 70601608 70601965 -50655565 + MLT1F2 LTR MaLR 172 546 -14 2 1123 225 0 0 0 chr12 70601967 70601992 -50655538 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1123 360 0 0 0 chr12 70602990 70603030 -50654500 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1123 183 42 0 0 chr12 70603439 70603463 -50654067 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1123 338 279 158 63 chr12 70604054 70604307 -50653223 - B4A SINE B4 0 292 16 2 1123 378 0 0 0 chr12 70604309 70604351 -50653179 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1123 1156 238 141 68 chr12 70604353 70604554 -50652976 + MTD LTR MaLR 8 210 -209 2 1123 809 172 15 15 chr12 70604554 70604690 -50652840 + B1_Mur2 SINE Alu 1 136 -13 2 1123 360 0 0 0 chr12 70604690 70604730 -50652800 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1123 1156 238 141 68 chr12 70604730 70604897 -50652633 + MTD LTR MaLR 211 403 -16 2 1123 303 270 78 39 chr12 70604937 70605014 -50652516 + ID_B1 SINE B4 56 135 -89 2 1123 288 0 0 0 chr12 70605060 70605092 -50652438 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1123 236 292 77 0 chr12 70605101 70605166 -50652364 + ID_B1 SINE B4 87 156 -68 2 1123 495 0 0 0 chr12 70605173 70605228 -50652302 + (CAAAC)n Simple_repeat Simple_repeat 1 55 0 2 1123 733 268 7 0 chr12 70605232 70605385 -50652145 + RSINE1 SINE B4 12 165 0 2 1123 236 289 24 139 chr12 70605385 70605441 -50652089 + B2_Mm2 SINE B2 11 195 0 2 1123 416 312 79 24 chr12 70605607 70605771 -50651759 + MLT1A LTR MaLR 1 173 -217 2 1123 788 251 104 0 chr12 70605773 70605956 -50651574 + B3 SINE B2 2 203 -13 2 1123 472 301 0 0 chr12 70606006 70606182 -50651348 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1123 335 23 23 0 chr12 70606199 70606243 -50651287 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1123 29 28 0 0 chr12 70606592 70606628 -50650902 + AT_rich Low_complexity Low_complexity 1 36 0 2 1123 694 217 8 0 chr12 70606657 70606786 -50650744 + B1F1 SINE Alu 20 149 0 2 1123 285 146 67 11 chr12 70606807 70606897 -50650633 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 1123 1832 140 75 55 chr12 70606906 70607268 -50650262 - ORR1B1 LTR MaLR 0 394 26 2 1123 3209 36 0 13 chr12 70607658 70608055 -50649475 + L1Md_F2 LINE L1 6191 6582 0 2 1123 446 237 33 50 chr12 70608072 70608192 -50649338 + MLT1A LTR MaLR 249 366 -8 2 1123 654 355 63 42 chr12 70608388 70608717 -50648813 - MLT1I LTR MaLR -2 409 74 2 1123 600 158 10 0 chr12 70608717 70608818 -50648712 - RLTR31A_Mm LTR ERVK 0 557 456 2 1123 1619 139 19 0 chr12 70608826 70609084 -50648446 - RLTR31A_Mm LTR ERVK -321 263 1 2 1123 459 0 0 0 chr12 70609505 70609556 -50647974 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1123 185 189 24 119 chr12 70609609 70609693 -50647837 - L2 LINE L2 -1447 1972 1897 2 1123 1104 117 0 3 chr12 70610445 70611170 -50646360 + (TCC)n Simple_repeat Simple_repeat 1 722 0 2 1123 290 132 0 19 chr12 70611170 70611224 -50646306 + CT-rich Low_complexity Low_complexity 2 54 0 2 1123 998 231 14 9 chr12 70611304 70611514 -50646016 - ID_B1 SINE B4 -13 211 1 2 1123 2394 142 20 18 chr12 70611581 70611974 -50645556 - ORR1B1 LTR MaLR 0 394 1 2 1123 199 241 56 0 chr12 70612580 70612634 -50644896 + MIR SINE MIR 183 239 -23 2 1123 960 293 65 49 chr12 70612912 70613282 -50644248 - MLT1C LTR MaLR -72 395 20 2 1123 436 244 0 11 chr12 70613670 70613852 -50643678 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1123 344 161 16 0 chr12 70613854 70613916 -50643614 - B4A SINE B4 0 292 230 2 1123 192 257 2 0 chr12 70613999 70614048 -50643482 + L2a LINE L2 3382 3424 -2 3 1123 1381 156 4 9 chr12 70614549 70614775 -50642755 - URR1B DNA MER1_type 0 225 1 3 1123 279 0 0 0 chr12 70614822 70614853 -50642677 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1123 580 276 130 20 chr12 70614873 70615073 -50642457 + ID_B1 SINE B4 2 223 -1 3 1123 236 231 13 0 chr12 70615261 70615339 -50642191 + GA-rich Low_complexity Low_complexity 3 81 0 3 1123 279 54 0 0 chr12 70615929 70615966 -50641564 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1123 622 214 0 0 chr12 70615979 70616082 -50641448 - B3A SINE B2 -31 167 65 3 1123 512 226 8 73 chr12 70617266 70617390 -50640140 - ID_B1 SINE B4 -27 197 82 3 1123 450 0 0 0 chr12 70617832 70617882 -50639648 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1123 301 197 53 53 chr12 70619001 70619076 -50638454 + L1MDa LINE L1 2438 2512 -4121 3 1123 383 261 50 16 chr12 70619108 70619229 -50638301 - MTD LTR MaLR -14 405 281 3 1123 968 255 5 36 chr12 70620168 70620388 -50637142 + ID_B1 SINE B4 3 215 -9 3 1123 360 0 0 0 chr12 70620392 70620432 -50637098 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1123 292 179 128 0 chr12 70620432 70620510 -50637020 - Tigger7 DNA MER2_type -99 2392 2305 3 1123 277 196 0 0 chr12 70620813 70620864 -50636666 + MIRm SINE MIR 86 136 -140 3 1123 411 337 106 28 chr12 70621471 70621651 -50635879 + MLT1K LTR MaLR 44 237 -358 3 1123 585 0 0 0 chr12 70621869 70621934 -50635596 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 3 1123 319 359 68 14 chr12 70621970 70622117 -50635413 - HAL1-3A_ME LINE L1 -420 2438 2284 3 1123 274 288 24 24 chr12 70622135 70622217 -50635313 + MLT1K LTR MaLR 511 592 -3 3 1123 360 313 114 38 chr12 70623600 70623916 -50633614 - MLT1G LTR MaLR -5 550 196 3 1123 390 309 46 74 chr12 70623950 70624233 -50633297 + B4 SINE B4 2 276 -16 3 1123 210 118 0 0 chr12 70624278 70624312 -50633218 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1123 1329 100 16 0 chr12 70624443 70624633 -50632897 - B2_Mm1t SINE B2 0 193 1 3 1123 3014 48 8 11 chr12 70624643 70625024 -50632506 - L1Md_F2 LINE L1 -1 6581 6202 3 1123 212 320 66 51 chr12 70625727 70625966 -50631564 + L2b LINE L2 2902 3136 -239 3 1123 1136 211 169 28 chr12 70626943 70627095 -50630435 + ORR1D1 LTR MaLR 1 165 -209 3 1123 549 0 0 0 chr12 70627095 70627156 -50630374 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1123 1136 211 169 28 chr12 70627156 70627329 -50630201 + ORR1D1 LTR MaLR 166 371 -3 3 1123 327 367 28 0 chr12 70627412 70627521 -50630009 + PB1 SINE Alu 5 116 -11 3 1123 27 49 0 0 chr12 70627526 70627567 -50629963 + AT_rich Low_complexity Low_complexity 1 41 0 3 1123 4111 117 63 68 chr12 70628005 70628385 -50629145 - RMER6A LTR ERVK -1 755 331 3 1123 285 29 0 0 chr12 70628385 70628419 -50629111 + (CCCCCT)n Simple_repeat Simple_repeat 5 38 0 3 1123 4111 117 63 68 chr12 70628419 70628739 -50628791 - RMER6A LTR ERVK -426 330 40 3 1123 1079 66 58 0 chr12 70628739 70628876 -50628654 + B1_Mm SINE Alu 2 146 -1 3 1123 4111 117 63 68 chr12 70628876 70628933 -50628597 - RMER6A LTR ERVK -717 39 2 3 1123 270 0 0 0 chr12 70629206 70629236 -50628294 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1123 183 152 0 0 chr12 70629684 70629730 -50627800 + GA-rich Low_complexity Low_complexity 1 46 0 3 1123 291 260 0 40 chr12 70630264 70630340 -50627190 - ID4_ SINE ID -2 81 9 3 1123 525 115 0 0 chr12 70630497 70630584 -50626946 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 1123 289 281 153 24 chr12 70630846 70630970 -50626560 + RMER5 LTR ERV1 113 252 -282 3 1123 298 331 85 16 chr12 70631162 70631291 -50626239 - MLT1L LTR MaLR -221 389 252 3 1123 2717 157 88 11 chr12 70631324 70631405 -50626125 - RLTR20B3 LTR ERVK 0 577 483 3 1123 342 0 0 0 chr12 70631405 70631443 -50626087 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1123 2717 157 88 11 chr12 70631443 70631897 -50625633 - RLTR20B3 LTR ERVK -95 482 3 3 1123 251 277 0 44 chr12 70632127 70632195 -50625335 - ID4_ SINE ID -11 72 8 3 1123 870 139 7 0 chr12 70632254 70632391 -50625139 - B1_Mus2 SINE Alu -1 146 9 3 1123 216 0 0 0 chr12 70632588 70632612 -50624918 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1123 740 194 45 0 chr12 70632739 70632873 -50624657 + B1_Mur2 SINE Alu 5 144 -5 3 1123 362 240 164 0 chr12 70633825 70633929 -50623601 - B1F2 SINE Alu -26 123 3 3 1123 786 159 0 55 chr12 70633954 70634100 -50623430 - B1_Mur4 SINE Alu 0 150 13 3 1123 531 271 0 25 chr12 70634099 70634220 -50623310 - ID_B1 SINE B4 -37 187 70 3 1123 356 322 63 92 chr12 70634295 70634579 -50622951 + MER45C DNA Tip100 1 276 -677 3 1123 258 325 50 0 chr12 70634845 70634925 -50622605 + MER45C DNA Tip100 549 632 -321 3 1123 579 256 15 0 chr12 70635046 70635179 -50622351 + RSINE1 SINE B4 2 136 -29 3 1123 614 214 48 0 chr12 70635383 70635509 -50622021 + B1F1 SINE Alu 3 134 -15 3 1123 305 208 13 0 chr12 70635527 70635604 -50621926 + GA-rich Low_complexity Low_complexity 2 79 0 3 1123 434 278 54 49 chr12 70635606 70635791 -50621739 + B3A SINE B2 1 186 -12 3 1123 879 18 0 26 chr12 70635792 70635905 -50621625 + B1_Mus2 SINE Alu 38 147 0 3 1123 1074 254 105 21 chr12 70636107 70636441 -50621089 + MLT1A LTR MaLR 2 363 -11 3 1123 2287 119 3 0 chr12 70636600 70636918 -50620612 + ORR1A2 LTR MaLR 1 319 -8 3 1123 312 319 146 6 chr12 70637313 70637471 -50620059 + LTR40b LTR ERVL 3 182 -280 3 1123 252 276 23 136 chr12 70637499 70637587 -50619943 + PB1D10 SINE Alu 19 96 -21 3 1123 189 0 0 0 chr12 70637592 70637613 -50619917 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1123 1101 67 0 0 chr12 70641192 70641327 -50616203 + B1_Mus1 SINE Alu 2 136 -12 3 1123 953 297 107 12 chr12 70641831 70642157 -50615373 + MLT1A0 LTR MaLR 12 408 0 3 1123 383 335 39 115 chr12 70642899 70643159 -50614371 - MLT1B LTR MaLR -14 376 137 3 1123 276 318 41 94 chr12 70643257 70643427 -50614103 - MLT1B LTR MaLR -223 167 7 3 1123 201 277 45 30 chr12 70643586 70643653 -50613877 + MIRc SINE MIR 83 150 -118 3 1123 199 293 0 0 chr12 70643619 70643660 -50613870 + MIR3 SINE MIR 114 154 -54 3 1123 203 250 0 0 chr12 70643732 70643780 -50613750 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1123 28 21 0 40 chr12 70643957 70643988 -50613542 + AT_rich Low_complexity Low_complexity 1 31 0 3 1123 1204 138 21 11 chr12 70643988 70644179 -50613351 - B2_Mm2 SINE B2 -1 194 2 3 1123 28 21 0 40 chr12 70644179 70644197 -50613333 + AT_rich Low_complexity Low_complexity 1 17 0 3 1123 281 239 70 0 chr12 70644206 70644277 -50613253 - PB1D10 SINE Alu -41 76 1 3 1123 207 0 0 0 chr12 70644395 70644418 -50613112 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1123 216 97 0 0 chr12 70644586 70644617 -50612913 + (C)n Simple_repeat Simple_repeat 1 31 0 3 1123 195 250 78 0 chr12 70644824 70644888 -50612642 - MIR SINE MIR -103 159 91 3 1123 973 207 40 5 chr12 70644970 70645169 -50612361 - B3 SINE B2 -10 206 1 3 1123 323 310 22 58 chr12 70645173 70645310 -50612220 - MER44C DNA MER2_type -95 638 507 3 1123 893 290 33 56 chr12 70645728 70646031 -50611499 + RMER5 LTR ERV1 236 531 -3 3 1123 429 283 18 9 chr12 70646056 70646170 -50611360 - MER44C DNA MER2_type -618 115 1 3 1123 308 296 71 0 chr12 70646423 70646521 -50611009 - MER5B DNA MER1_type -30 148 44 3 1123 232 351 49 68 chr12 70646608 70646770 -50610760 + MER5A DNA MER1_type 30 188 -1 3 1123 1323 85 0 50 chr12 70647176 70647374 -50610156 + B2_Mm2 SINE B2 1 188 -7 3 1123 397 357 30 76 chr12 70647374 70647677 -50609853 - MLT1B LTR MaLR -19 371 83 3 1123 217 150 25 0 chr12 70647678 70647718 -50609812 + CT-rich Low_complexity Low_complexity 2 42 0 3 1123 480 79 0 14 chr12 70647722 70647792 -50609738 - B1_Mur4 SINE Alu -3 147 75 3 140 6771 15 1 0 chr12 70647792 70648533 -50608997 + RLTR4_Mm LTR ERV1 1 742 0 3 1124 382 174 51 61 chr12 70648533 70648568 -50608962 - B1F2 SINE Alu -65 84 50 3 1124 64801 15 6 0 chr12 70648568 70656092 -50601438 + RLTR4_MM-int LTR ERV1 36 7601 0 3 1124 6771 15 1 0 chr12 70656092 70656833 -50600697 + RLTR4_Mm LTR ERV1 1 742 0 3 1124 676 92 0 0 chr12 70656833 70656920 -50600610 - B1_Mus1 SINE Alu -61 87 1 3 1124 231 259 0 17 chr12 70657048 70657107 -50600423 - Charlie12 DNA MER1_type -13 2860 2803 3 1124 726 143 175 0 chr12 70658032 70658158 -50599372 + B3 SINE B2 6 153 -63 3 1124 1921 151 63 78 chr12 70658381 70658407 -50599123 + ORR1C1 LTR MaLR 3 28 -350 3 1124 1230 61 0 0 chr12 70658407 70658555 -50598975 + B1_Mus1 SINE Alu 1 148 0 3 1124 1921 151 63 78 chr12 70658555 70658910 -50598620 + ORR1C1 LTR MaLR 29 378 0 3 1124 1811 141 21 3 chr12 70659189 70659473 -50598057 - RMER19B LTR ERVK -613 289 1 3 1124 321 291 44 26 chr12 70659487 70659600 -50597930 - PB1D10 SINE Alu -1 116 2 3 1124 230 311 67 13 chr12 70659901 70659976 -50597554 + B1F SINE Alu 1 79 -70 3 1124 288 0 0 0 chr12 70660004 70660036 -50597494 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 3 1124 275 296 35 62 chr12 70660140 70660284 -50597246 + MIR SINE MIR 105 244 -18 3 1124 2640 144 105 68 chr12 70660969 70661514 -50596016 + RMER15 LTR ERVL 1 565 -10 3 1124 787 309 35 0 chr12 70661495 70661696 -50595834 - B4A SINE B4 -59 233 26 3 1124 1715 141 51 18 chr12 70661737 70662106 -50595424 - MTC LTR MaLR 0 421 47 3 1124 914 152 0 26 chr12 70662511 70662666 -50594864 - MTC LTR MaLR -270 151 1 3 1124 804 159 368 0 chr12 70662807 70662989 -50594541 + RMER19C LTR ERVK 1 249 -362 3 1124 482 252 70 0 chr12 70663034 70663149 -50594381 + B4A SINE B4 168 290 -2 3 1124 1287 41 0 0 chr12 70663502 70663649 -50593881 - B1_Mm SINE Alu 0 147 1 3 1124 189 107 0 0 chr12 70663787 70663815 -50593715 + (AGGGGG)n Simple_repeat Simple_repeat 5 32 0 3 1124 217 281 22 0 chr12 70663827 70663916 -50593614 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 3 1124 384 22 0 0 chr12 70663933 70663978 -50593552 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1124 297 0 0 0 chr12 70663978 70664010 -50593520 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1124 913 224 58 95 chr12 70664718 70665030 -50592500 - B4A SINE B4 0 292 9 4 1124 554 298 91 8 chr12 70665369 70665501 -50592029 + RSINE1 SINE B4 23 165 0 4 1124 186 133 0 0 chr12 70665925 70665955 -50591575 + (TATG)n Simple_repeat Simple_repeat 4 33 0 4 1124 180 0 0 0 chr12 70666070 70666090 -50591440 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1124 608 230 86 0 chr12 70666803 70666942 -50590588 - ID_B1 SINE B4 -2 222 72 4 1124 240 167 0 0 chr12 70667024 70667072 -50590458 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1124 222 37 0 0 chr12 70667072 70667099 -50590431 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1124 1128 75 0 0 chr12 70667850 70667996 -50589534 + B1_Mus1 SINE Alu 1 146 -2 4 1124 377 350 8 17 chr12 70668030 70668149 -50589381 + MLT1A0 LTR MaLR 156 273 -92 4 1124 529 235 75 16 chr12 70668141 70668327 -50589203 - MLT1B LTR MaLR -173 217 21 4 1124 195 139 0 0 chr12 70668861 70668897 -50588633 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 4 1124 1037 148 196 0 chr12 70668981 70669170 -50588360 + URR1A DNA MER1_type 1 226 0 4 1124 431 259 17 17 chr12 70669983 70670101 -50587429 + PB1D9 SINE Alu 2 119 -1 4 1124 544 221 300 52 chr12 70671595 70671860 -50585670 - MTEb LTR MaLR 0 379 49 4 1124 343 239 56 96 chr12 70671931 70672056 -50585474 + PB1D7 SINE Alu 1 120 0 4 1124 189 0 0 0 chr12 70672056 70672077 -50585453 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1124 767 169 29 0 chr12 70672256 70672392 -50585138 - B1_Mur2 SINE Alu -1 148 9 4 1124 1176 134 16 21 chr12 70672466 70672656 -50584874 - B2_Mm1t SINE B2 -3 190 2 4 1124 492 196 106 9 chr12 70672683 70672796 -50584734 - ID_B1 SINE B4 -1 223 100 4 1124 269 0 0 53 chr12 70672810 70672848 -50584682 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1124 1436 192 149 14 chr12 70673002 70673372 -50584158 + MTC LTR MaLR 2 421 0 4 1124 475 198 71 9 chr12 70673905 70674017 -50583513 + PB1D9 SINE Alu 2 120 0 4 1124 1389 35 58 0 chr12 70674018 70674189 -50583341 - B2_Mm2 SINE B2 -14 181 1 4 1124 217 233 0 0 chr12 70674277 70674320 -50583210 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1124 218 257 25 63 chr12 70674324 70674403 -50583127 + ID4 SINE ID 8 83 0 4 1124 25 0 0 0 chr12 70675582 70675607 -50581923 + AT_rich Low_complexity Low_complexity 1 25 0 4 1124 286 100 40 0 chr12 70676363 70676413 -50581117 + B1_Mus2 SINE Alu 96 147 0 4 1124 286 195 61 61 chr12 70676674 70676756 -50580774 - PB1D10 SINE Alu -1 116 35 4 1124 419 52 17 0 chr12 70678323 70678381 -50579149 + (TTCC)n Simple_repeat Simple_repeat 1 59 0 4 1124 478 208 96 0 chr12 70678381 70678506 -50579024 - B1_Mur1 SINE Alu -5 144 8 4 1124 261 309 166 6 chr12 70679153 70679316 -50578214 + L1M4 LINE L1 5388 5576 -602 4 1124 321 26 0 0 chr12 70680428 70680466 -50577064 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1124 252 316 0 0 chr12 70680559 70680638 -50576892 + ID4_ SINE ID 3 81 -2 4 1124 1069 78 151 29 chr12 70681522 70681694 -50575836 + B2_Mm2 SINE B2 1 193 -2 4 1124 760 226 34 11 chr12 70682532 70682711 -50574819 - B3A SINE B2 -1 197 15 4 1124 198 103 0 0 chr12 70682963 70682992 -50574538 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1124 378 0 0 0 chr12 70684460 70684502 -50573028 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1124 329 293 27 54 chr12 70684562 70684710 -50572820 - ID_B1 SINE B4 0 224 81 4 1124 683 196 7 0 chr12 70685829 70685967 -50571563 - B1_Mus2 SINE Alu 0 147 9 4 1124 795 86 9 0 chr12 70687140 70687245 -50570285 - U6 snRNA snRNA -1 106 1 4 1124 24 32 0 0 chr12 70687394 70687425 -50570105 + AT_rich Low_complexity Low_complexity 1 31 0 4 1124 341 202 25 25 chr12 70687983 70688064 -50569466 + PB1D10 SINE Alu 32 112 -5 4 1124 391 272 118 16 chr12 70688527 70688654 -50568876 + B4 SINE B4 149 288 -4 4 1124 462 317 145 17 chr12 70688703 70688992 -50568538 - MER2 DNA MER2_type 0 345 20 4 1124 369 0 0 0 chr12 70689108 70689149 -50568381 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1124 1169 50 0 0 chr12 70689149 70689289 -50568241 - B1_Mus1 SINE Alu -7 141 2 4 1124 34 24 0 0 chr12 70689484 70689525 -50568005 + AT_rich Low_complexity Low_complexity 1 41 0 4 1124 1738 149 204 85 chr12 70689784 70690254 -50567276 + RLTR11A LTR ERVK 1 526 -2 4 1124 382 168 232 40 chr12 70690281 70690380 -50567150 + B1_Mus1 SINE Alu 18 135 -13 4 1124 1142 78 0 0 chr12 70690428 70690570 -50566960 + B1_Mus2 SINE Alu 5 146 -1 4 1124 632 84 21 0 chr12 70690572 70690667 -50566863 + (GAAA)n Simple_repeat Simple_repeat 3 99 0 4 1124 539 88 130 17 chr12 70690923 70691038 -50566492 - B1_Mur4 SINE Alu -14 136 9 4 1124 273 240 0 96 chr12 70690972 70691055 -50566475 - B4 SINE B4 -136 156 82 4 1124 462 220 245 142 chr12 70691105 70691249 -50566281 - MTE2a LTR MaLR 0 379 166 4 1124 440 240 30 37 chr12 70691249 70691383 -50566147 - B1_Mur1 SINE Alu -12 137 5 4 1124 462 220 245 142 chr12 70691383 70691577 -50565953 - MTE2a LTR MaLR -214 165 6 4 1124 1830 61 49 0 chr12 70692152 70692398 -50565132 - Lx3_Mus LINE L1 -644 6365 6108 4 1124 4707 64 20 0 chr12 70692398 70693010 -50564520 + Lx3_Mus LINE L1 6371 6994 -15 4 1124 212 243 127 14 chr12 70693499 70693570 -50563960 - ID4_ SINE ID -2 81 3 4 1124 1438 67 17 0 chr12 70693679 70693859 -50563671 - B2_Mm2 SINE B2 -12 183 1 4 1124 1081 66 7 0 chr12 70694419 70694555 -50562975 + B1_Mus2 SINE Alu 5 141 -6 4 1124 390 91 0 0 chr12 70694607 70694662 -50562868 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4 1124 446 259 55 61 chr12 70694820 70695001 -50562529 - B3A SINE B2 -17 181 2 4 1124 470 225 54 9 chr12 70695378 70695490 -50562040 - PB1D10 SINE Alu 0 117 1 4 1124 22 0 0 0 chr12 70695571 70695593 -50561937 + AT_rich Low_complexity Low_complexity 1 22 0 4 1124 1648 141 53 50 chr12 70695784 70696105 -50561425 + RLTRETN_Mm LTR ERVK 1 322 0 4 1124 3218 53 179 2 chr12 70696150 70696585 -50560945 - RLTR1B LTR ERV1 0 512 1 4 1124 385 264 103 8 chr12 70696595 70696721 -50560809 - ID_B1 SINE B4 -3 221 84 4 1124 939 69 13 34 chr12 70697034 70697183 -50560347 - B1_Mus2 SINE Alu -1 146 1 4 1124 288 0 0 0 chr12 70697809 70697841 -50559689 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1124 21 0 0 0 chr12 70698121 70698142 -50559388 + AT_rich Low_complexity Low_complexity 1 21 0 4 1124 284 274 103 26 chr12 70698343 70698459 -50559071 + MER20 DNA MER1_type 90 214 -5 4 1124 318 212 81 12 chr12 70698921 70699007 -50558523 + PB1 SINE Alu 36 127 0 4 1124 1282 34 0 0 chr12 70699180 70699327 -50558203 + B1_Mm SINE Alu 1 147 0 4 1124 219 103 0 0 chr12 70699330 70699369 -50558161 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1124 23 0 0 0 chr12 70699732 70699755 -50557775 + AT_rich Low_complexity Low_complexity 1 23 0 4 1124 231 256 162 35 chr12 70700956 70701098 -50556432 + L1M5 LINE L1 4808 4967 -1179 4 1124 1941 130 20 17 chr12 70701099 70701443 -50556087 + RLTR15 LTR ERVK 15 359 0 4 1124 250 278 0 14 chr12 70701494 70701567 -50555963 - PB1D10 SINE Alu 0 117 46 4 1124 582 239 126 40 chr12 70701655 70701877 -50555653 + B4 SINE B4 3 243 -49 4 1124 399 21 0 0 chr12 70701922 70701970 -50555560 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1124 21 0 0 0 chr12 70701980 70702001 -50555529 + AT_rich Low_complexity Low_complexity 1 21 0 4 1124 775 255 6 11 chr12 70702437 70702633 -50554897 - B3 SINE B2 -9 186 1 4 1124 25 51 0 0 chr12 70703497 70703536 -50553994 + AT_rich Low_complexity Low_complexity 1 39 0 4 1124 389 270 30 0 chr12 70703618 70703718 -50553812 - B3 SINE B2 -68 148 46 4 1124 315 0 0 0 chr12 70703779 70703814 -50553716 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 4 1124 27 29 0 0 chr12 70704196 70704230 -50553300 + AT_rich Low_complexity Low_complexity 1 34 0 4 1124 360 138 173 13 chr12 70705705 70705816 -50551714 - B2_Mm2 SINE B2 -3 192 47 4 1124 1259 107 11 0 chr12 70705863 70706040 -50551490 - B2_Mm1t SINE B2 -14 179 1 4 1124 1403 96 0 5 chr12 70706202 70706391 -50551139 + B2_Mm2 SINE B2 1 188 -7 4 1124 326 281 62 35 chr12 70706450 70706594 -50550936 - B1F SINE Alu -1 148 1 4 1124 411 278 38 38 chr12 70706465 70706596 -50550934 - ID_B1 SINE B4 -14 210 80 4 1124 850 215 120 5 chr12 70707115 70707307 -50550223 + B3 SINE B2 2 215 -1 4 1124 1225 48 0 0 chr12 70707352 70707498 -50550032 + B1_Mus2 SINE Alu 2 147 0 4 1124 24 32 0 0 chr12 70707498 70707529 -50550001 + AT_rich Low_complexity Low_complexity 1 31 0 4 1124 216 211 125 14 chr12 70707536 70707608 -50549922 - PB1D10 SINE Alu -37 80 1 4 1124 402 167 0 0 chr12 70707856 70707940 -50549590 + (TA)n Simple_repeat Simple_repeat 1 84 0 4 1124 534 70 0 0 chr12 70707939 70708010 -50549520 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1124 306 258 0 0 chr12 70708010 70708076 -50549454 - RSINE1 SINE B4 -32 133 68 4 1124 361 274 8 50 chr12 70708576 70708695 -50548835 - PB1D10 SINE Alu -2 115 2 4 1124 802 162 179 0 chr12 70708849 70709022 -50548508 + B3 SINE B2 1 204 -12 5 1124 1037 96 6 0 chr12 70709344 70709522 -50548008 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1124 245 83 0 40 chr12 70709526 70709576 -50547954 + (CCCA)n Simple_repeat Simple_repeat 3 50 0 5 1124 1119 84 0 0 chr12 70709576 70709754 -50547776 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1124 409 248 134 8 chr12 70709761 70709895 -50547635 - B3A SINE B2 -47 151 1 5 1124 324 242 96 29 chr12 70709895 70710031 -50547499 - L1MC5 LINE L1 -758 7203 7059 5 1124 26 30 0 0 chr12 70710057 70710090 -50547440 + AT_rich Low_complexity Low_complexity 1 33 0 5 1124 418 150 50 0 chr12 70710154 70710234 -50547296 + ID_B1 SINE B4 134 217 -7 5 1124 859 225 34 29 chr12 70710244 70710450 -50547080 + B3 SINE B2 1 207 -9 5 1124 296 262 161 7 chr12 70711183 70711318 -50546212 - B3A SINE B2 -13 203 48 5 1124 21 36 0 0 chr12 70711346 70711374 -50546156 + AT_rich Low_complexity Low_complexity 1 28 0 5 1124 180 0 0 0 chr12 70712053 70712073 -50545457 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1124 1235 37 43 0 chr12 70712122 70712783 -50544747 + (CAT)n Simple_repeat Simple_repeat 1 689 0 5 1124 274 220 31 72 chr12 70712811 70712905 -50544625 - B1F2 SINE Alu -13 107 7 5 1124 605 258 6 38 chr12 70712835 70712992 -50544538 - B4A SINE B4 -136 156 5 5 1124 222 37 0 0 chr12 70713005 70713032 -50544498 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1124 1222 48 0 0 chr12 70713032 70713177 -50544353 - B1_Mus1 SINE Alu 0 148 4 5 1124 266 341 15 8 chr12 70713820 70713953 -50543577 + L1ME2 LINE L1 5118 5251 -895 5 1124 229 234 130 0 chr12 70714049 70714126 -50543404 + L1ME2 LINE L1 5363 5449 -995 5 1124 267 263 199 28 chr12 70714314 70714490 -50543040 + L1ME2 LINE L1 5829 6034 -130 5 1124 935 169 0 7 chr12 70714516 70714665 -50542865 + B1_Mur3 SINE Alu 2 149 0 5 1124 207 333 46 31 chr12 70714742 70714872 -50542658 + MIRb SINE MIR 24 155 -113 5 1124 22 35 0 0 chr12 70715941 70715970 -50541560 + AT_rich Low_complexity Low_complexity 1 29 0 5 1124 398 133 0 58 chr12 70715974 70716094 -50541436 + (TG)n Simple_repeat Simple_repeat 2 114 0 5 1124 288 230 53 13 chr12 70716136 70716211 -50541319 - B3 SINE B2 -133 83 6 5 1124 188 34 0 33 chr12 70716247 70716277 -50541253 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1124 1150 51 0 0 chr12 70716277 70716415 -50541115 - B1_Mus1 SINE Alu -9 139 2 5 1124 265 262 114 68 chr12 70716506 70716622 -50540908 + L1MC5 LINE L1 7601 7718 -243 5 1124 677 180 166 104 chr12 70716622 70716833 -50540697 + URR1B DNA MER1_type 1 224 -1 5 1124 265 262 114 68 chr12 70716833 70717023 -50540507 + L1MC5 LINE L1 7719 7921 -40 5 1124 316 211 14 14 chr12 70717513 70717585 -50539945 - ID_B1 SINE B4 -14 210 139 5 1124 22 35 0 0 chr12 70717631 70717660 -50539870 + AT_rich Low_complexity Low_complexity 1 29 0 5 1124 266 292 0 15 chr12 70718601 70718667 -50538863 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 5 1124 575 223 241 28 chr12 70719272 70719413 -50538117 + ORR1E LTR MaLR 1 157 -202 5 1124 3981 103 35 28 chr12 70719413 70720014 -50537516 - RLTR1D LTR ERV1 0 605 1 5 1124 575 227 221 27 chr12 70720014 70720174 -50537356 + ORR1E LTR MaLR 158 377 -2 5 1124 348 274 45 13 chr12 70720372 70720527 -50537003 + RSINE1 SINE B4 3 162 -3 5 1124 742 164 41 35 chr12 70720568 70720713 -50536817 - B1_Mur3 SINE Alu -3 146 1 5 1124 646 262 30 0 chr12 70720963 70721127 -50536403 - B3 SINE B2 -7 209 41 5 1124 964 31 133 0 chr12 70721258 70721386 -50536144 - B1_Mus2 SINE Alu -2 145 1 5 1124 1066 164 46 10 chr12 70722034 70722231 -50535299 + B3 SINE B2 3 206 -10 5 1124 794 213 0 0 chr12 70722302 70722438 -50535092 + B1_Mur2 SINE Alu 1 136 -13 5 1124 202 95 23 23 chr12 70722439 70722482 -50535048 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1124 200 182 55 0 chr12 70722587 70722642 -50534888 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 5 1124 217 355 13 0 chr12 70722970 70723046 -50534484 - ID4 SINE ID -4 79 3 5 1124 244 265 15 0 chr12 70723295 70723363 -50534167 - L1MC4a LINE L1 -10 7872 7804 5 1124 248 150 0 0 chr12 70723523 70723563 -50533967 - RSINE1 SINE B4 -47 118 79 5 1124 180 0 0 0 chr12 70723690 70723710 -50533820 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1124 4038 7 121 0 chr12 70723716 70724156 -50533374 + MT2_Mm LTR ERVL 1 493 0 5 1124 584 91 11 0 chr12 70724254 70724342 -50533188 + (TATG)n Simple_repeat Simple_repeat 4 92 0 5 1124 309 255 105 43 chr12 70726473 70726498 -50531032 + PB1D7 SINE Alu 13 120 0 5 1124 446 208 0 0 chr12 70726498 70726575 -50530955 + ID_B1 SINE B4 148 224 0 5 1124 285 29 0 0 chr12 70726596 70726630 -50530900 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 5 1124 830 252 30 25 chr12 70726728 70726927 -50530603 + B3 SINE B2 15 214 -2 5 1124 2458 176 164 24 chr12 70727070 70727648 -50529882 + RMER1B Other Other 408 1066 0 5 1124 31 44 0 0 chr12 70727745 70727790 -50529740 + AT_rich Low_complexity Low_complexity 1 45 0 5 1124 226 318 43 52 chr12 70728597 70728713 -50528817 + PB1D10 SINE Alu 1 115 -2 5 1124 571 346 36 16 chr12 70728992 70729239 -50528291 + MLT1A0 LTR MaLR 97 348 -17 5 1124 276 53 0 0 chr12 70729465 70729503 -50528027 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1124 621 269 14 21 chr12 70729503 70729647 -50527883 - RSINE1 SINE B4 -14 151 9 5 1124 324 48 0 0 chr12 70729676 70729718 -50527812 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1124 867 142 94 0 chr12 70729718 70729845 -50527685 - B1_Mur3 SINE Alu -10 139 1 5 1124 202 209 0 0 chr12 70729845 70729888 -50527642 - MIR SINE MIR -100 162 120 5 1124 340 253 13 0 chr12 70729972 70730047 -50527483 - ID4 SINE ID -7 76 1 5 1124 362 324 0 26 chr12 70730094 70730208 -50527322 - PB1D7 SINE Alu 0 120 10 5 1124 215 346 28 46 chr12 70730114 70730223 -50527307 - ID_B1 SINE B4 -45 179 73 5 1124 1380 75 33 118 chr12 70730769 70730844 -50526686 + B2_Mm2 SINE B2 2 76 -119 5 1124 1292 35 0 0 chr12 70730844 70730985 -50526545 + B1_Mus2 SINE Alu 1 141 -6 5 1124 189 0 0 0 chr12 70730987 70731008 -50526522 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 1124 1380 75 33 118 chr12 70731008 70731141 -50526389 + B2_Mm2 SINE B2 77 195 0 5 1124 267 300 129 52 chr12 70731265 70731381 -50526149 + PB1 SINE Alu 1 125 -2 5 1124 751 18 44 0 chr12 70731458 70731571 -50525959 + (CA)n Simple_repeat Simple_repeat 2 119 0 5 1124 1338 109 0 6 chr12 70731723 70731899 -50525631 + B2_Mm2 SINE B2 2 176 -19 5 1124 201 175 25 0 chr12 70731899 70731939 -50525591 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 5 1124 700 263 7 7 chr12 70732420 70732573 -50524957 - B3A SINE B2 -45 153 1 5 1124 969 223 34 10 chr12 70732681 70732889 -50524641 + B4 SINE B4 31 243 -49 5 1124 333 0 0 0 chr12 70732903 70732940 -50524590 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1124 28 48 0 0 chr12 70732986 70733028 -50524502 + AT_rich Low_complexity Low_complexity 1 42 0 5 1124 835 230 71 0 chr12 70733706 70733902 -50523628 + B3 SINE B2 1 210 -6 5 1124 375 260 49 49 chr12 70733971 70734133 -50523397 + L1M3 LINE L1 5491 5652 -531 5 1124 3236 43 0 0 chr12 70734567 70734936 -50522594 + L1Md_T LINE L1 6214 6582 0 5 1124 616 306 25 18 chr12 70734985 70735148 -50522382 + RSINE1 SINE B4 2 165 0 5 1124 377 294 9 18 chr12 70735333 70735444 -50522086 + PB1D10 SINE Alu 1 110 -7 5 1124 1147 199 19 5 chr12 70735824 70736031 -50521499 + B3 SINE B2 5 214 -2 5 1124 26 74 0 0 chr12 70736068 70736122 -50521408 + AT_rich Low_complexity Low_complexity 1 54 0 5 1124 649 280 71 0 chr12 70736780 70736991 -50520539 + B4A SINE B4 3 228 -64 5 1124 285 29 0 0 chr12 70737096 70737130 -50520400 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1124 237 247 24 131 chr12 70737617 70737701 -50519829 + MER21B LTR ERV1 7 81 -782 5 1124 801 279 266 0 chr12 70737798 70738155 -50519375 + MER21B LTR ERV1 298 749 -114 5 1124 1167 116 0 0 chr12 70738936 70739083 -50518447 + B1_Mus2 SINE Alu 1 147 0 5 1124 1355 102 5 5 chr12 70739335 70739523 -50518007 + B2_Mm2 SINE B2 3 190 -5 5 1124 1277 55 0 0 chr12 70739543 70739689 -50517841 + B1_Mus1 SINE Alu 2 147 -1 5 1124 377 103 11 152 chr12 70739746 70739838 -50517692 + B2_Mm2 SINE B2 112 190 -5 5 1124 370 291 36 9 chr12 70739978 70740089 -50517441 - PB1D7 SINE Alu -1 119 6 5 1124 1012 228 19 0 chr12 70740249 70740455 -50517075 + B3 SINE B2 1 210 -6 5 1124 929 160 35 0 chr12 70740487 70740503 -50517027 + B1_Mur1 SINE Alu 1 21 -128 5 1124 396 0 0 0 chr12 70740503 70740547 -50516983 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1124 929 160 35 0 chr12 70740547 70740674 -50516856 + B1_Mur1 SINE Alu 22 148 -1 5 1124 1276 68 0 0 chr12 70742108 70742255 -50515275 + B1_Mus1 SINE Alu 2 148 0 5 1124 611 274 68 7 chr12 70742268 70742415 -50515115 + B3A SINE B2 15 170 -28 5 1124 420 20 0 0 chr12 70742429 70742478 -50515052 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 5 1124 3032 49 1 1 chr12 70742499 70742874 -50514656 + L1Md_F3 LINE L1 5625 5999 -1009 5 1124 1696 44 5 14 chr12 70742874 70743081 -50514449 + L1Md_F2 LINE L1 6366 6570 -12 5 1124 2239 158 20 49 chr12 70743081 70743158 -50514372 + L1Md_F3 LINE L1 6000 6064 -944 5 1124 26 30 0 0 chr12 70743276 70743309 -50514221 + AT_rich Low_complexity Low_complexity 1 33 0 5 1124 536 264 66 0 chr12 70743316 70743437 -50514093 + RSINE1 SINE B4 3 131 -34 5 1124 303 319 128 77 chr12 70743863 70744175 -50513355 + ORR1E LTR MaLR 22 349 -10 5 1124 750 178 65 22 chr12 70744997 70745123 -50512407 + B1_Mus1 SINE Alu 1 135 -13 5 1124 315 0 0 0 chr12 70745123 70745158 -50512372 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 6 1124 750 178 65 22 chr12 70745158 70745169 -50512361 + B1_Mus1 SINE Alu 136 144 -4 5 1124 468 0 0 0 chr12 70745425 70745477 -50512053 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 6 1124 392 245 91 11 chr12 70746025 70746167 -50511363 + MER58A DNA MER1_type 3 161 -63 6 1124 395 301 40 34 chr12 70746210 70746358 -50511172 - B1F2 SINE Alu 0 149 1 6 1124 1258 54 0 7 chr12 70746474 70746623 -50510907 + B1_Mus1 SINE Alu 1 148 0 6 1124 278 246 16 0 chr12 70747313 70747374 -50510156 + MER5B DNA MER1_type 113 174 -4 6 1124 214 245 0 19 chr12 70747578 70747632 -50509898 + GA-rich Low_complexity Low_complexity 2 54 0 6 1124 358 156 259 60 chr12 70747853 70747969 -50509561 + B1F SINE Alu 4 142 -7 6 1124 574 296 14 0 chr12 70748199 70748341 -50509189 + B1_Mur1 SINE Alu 6 149 0 6 1124 1441 89 5 10 chr12 70748351 70748544 -50508986 + B2_Mm2 SINE B2 1 192 -3 6 1124 200 88 0 66 chr12 70748628 70748689 -50508841 + (ATGGTG)n Simple_repeat Simple_repeat 1 57 0 6 1124 375 333 78 0 chr12 70748694 70748823 -50508707 + B1F SINE Alu 10 148 -1 6 1124 283 292 15 0 chr12 70749001 70749066 -50508464 + ID4 SINE ID 15 80 -3 6 1124 1013 48 5 206 chr12 70749198 70749382 -50508148 + B1_Mus2 SINE Alu 1 147 0 6 1124 1168 160 58 49 chr12 70749827 70750050 -50507480 + URR1B DNA MER1_type 1 225 0 6 1124 212 239 22 0 chr12 70750098 70750144 -50507386 + GA-rich Low_complexity Low_complexity 3 49 0 6 1124 429 70 0 0 chr12 70750329 70750386 -50507144 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1124 200 267 0 39 chr12 70750471 70750549 -50506981 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1124 1129 244 185 22 chr12 70750551 70750907 -50506623 + MTD LTR MaLR 2 415 -4 6 1124 324 0 0 0 chr12 70751157 70751193 -50506337 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1124 396 209 0 0 chr12 70751231 70751322 -50506208 + GA-rich Low_complexity Low_complexity 2 92 0 6 1124 30 45 0 0 chr12 70751509 70751553 -50505977 + AT_rich Low_complexity Low_complexity 1 44 0 6 1124 497 288 135 6 chr12 70751904 70752082 -50505448 + MT2A LTR ERVL 327 527 -6 6 1124 275 266 25 12 chr12 70752439 70752519 -50505011 + MTEa LTR MaLR 299 379 0 6 1124 337 335 123 13 chr12 70752521 70752756 -50504774 + MTEa-int LTR MaLR 3 263 -1317 6 1124 976 93 14 0 chr12 70752756 70752895 -50504635 + B2_Mm2 SINE B2 1 141 -54 6 1124 42 0 0 0 chr12 70752948 70752990 -50504540 + AT_rich Low_complexity Low_complexity 1 42 0 6 1124 745 266 127 20 chr12 70752995 70753248 -50504282 + MTEa-int LTR MaLR 249 528 -1052 6 1124 973 213 45 0 chr12 70753280 70753482 -50504048 + B3 SINE B2 6 216 0 6 1124 1439 58 12 0 chr12 70753524 70753696 -50503834 + B2_Mm1a SINE B2 1 174 -19 6 1124 438 204 153 0 chr12 70753719 70753817 -50503713 + B1F SINE Alu 1 113 -36 6 1124 242 239 161 11 chr12 70753741 70753834 -50503696 - YREP_Mm Unknown Unknown -1518 294 188 6 1124 2344 302 78 18 chr12 70753984 70754750 -50502780 + MTEa-int LTR MaLR 735 1546 -34 6 1124 377 348 0 35 chr12 70754738 70754881 -50502649 + ORR1E LTR MaLR 8 145 -214 6 1124 239 241 17 0 chr12 70754967 70755033 -50502497 - L1M5 LINE L1 -561 5601 5535 6 1124 376 284 28 0 chr12 70755350 70755491 -50502039 - L1M5 LINE L1 -698 5464 5320 6 1124 225 81 108 0 chr12 70755536 70755573 -50501957 - B1F SINE Alu -92 57 17 6 1124 21 82 0 0 chr12 70755833 70755882 -50501648 + AT_rich Low_complexity Low_complexity 1 49 0 6 1124 17808 48 0 1 chr12 70755917 70758799 -50498731 - L1Md_F2 LINE L1 0 6582 3704 6 1124 1053 239 10 0 chr12 70759208 70759417 -50498113 + B3 SINE B2 4 214 -2 6 1124 1112 265 91 0 chr12 70759545 70759809 -50497721 + B4 SINE B4 3 290 -2 6 1124 267 212 0 0 chr12 70759811 70759891 -50497639 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1124 354 263 95 24 chr12 70760461 70760671 -50496859 - L1M5 LINE L1 -2760 3386 3162 6 1124 376 211 102 37 chr12 70760882 70760990 -50496540 - PB1D10 SINE Alu 0 117 3 6 1124 287 333 0 0 chr12 70761085 70761160 -50496370 + ID4 SINE ID 9 83 0 6 1124 261 0 0 0 chr12 70761292 70761321 -50496209 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1124 655 272 40 80 chr12 70761357 70761443 -50496087 + L1M5 LINE L1 3682 3764 -2382 6 1124 186 103 0 0 chr12 70761443 70761472 -50496058 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 6 1124 655 272 40 80 chr12 70761472 70761534 -50495996 + L1M5 LINE L1 3765 3815 -2331 6 1124 4763 156 46 14 chr12 70761534 70762339 -50495191 + Lx5 LINE L1 6217 7047 -3 6 1124 655 272 40 80 chr12 70762339 70762612 -50494918 + L1M5 LINE L1 3816 4087 -2059 6 1124 4530 163 142 145 chr12 70762613 70763001 -50494529 + Lx7 LINE L1 6351 6770 -926 6 1124 1263 54 0 0 chr12 70763001 70763148 -50494382 - B1_Mus2 SINE Alu 0 147 1 6 1124 4530 163 142 145 chr12 70763148 70764108 -50493422 + Lx7 LINE L1 6771 7695 -1 6 1124 493 170 151 0 chr12 70764125 70764231 -50493299 + B1_Mm SINE Alu 2 123 -24 6 1124 270 187 133 0 chr12 70764415 70764490 -50493040 - Lx7 LINE L1 -98 7598 7514 6 1124 1127 82 0 13 chr12 70764512 70764647 -50492883 + B1_Mm SINE Alu 1 134 -13 6 1124 258 56 0 0 chr12 70764647 70764683 -50492847 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1124 1127 82 0 13 chr12 70764683 70764696 -50492834 + B1_Mm SINE Alu 135 147 0 6 1124 208 171 0 24 chr12 70764764 70764806 -50492724 + GA-rich Low_complexity Low_complexity 1 41 0 6 1124 1617 52 5 5 chr12 70764807 70764999 -50492531 + B2_Mm1t SINE B2 1 192 -1 6 1124 301 238 69 0 chr12 70765004 70765101 -50492429 + L1M5 LINE L1 4068 4178 -1968 6 1124 269 197 129 57 chr12 70765127 70765197 -50492333 + B4A SINE B4 12 86 -206 6 1124 6248 161 53 16 chr12 70765240 70766361 -50491169 - Lx2B LINE L1 0 7000 5838 6 1124 259 25 50 0 chr12 70766368 70766408 -50491122 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 6 1124 1191 112 0 11 chr12 70766409 70766598 -50490932 + L1_Mur1 LINE L1 3316 3502 -2384 6 1124 1425 82 32 5 chr12 70766599 70766784 -50490746 + B2_Mm2 SINE B2 4 193 -2 6 1124 1160 109 0 0 chr12 70766791 70766938 -50490592 + B1_Mus1 SINE Alu 2 148 0 6 1124 322 89 0 23 chr12 70766961 70767016 -50490514 + L1_Mur1 LINE L1 3472 3529 -385 6 1124 1704 118 78 14 chr12 70767016 70767309 -50490221 - RMER4B LTR ERVK -273 312 1 6 1124 547 112 6 35 chr12 70767403 70767514 -50490016 - B1_Mus1 SINE Alu -19 101 1 6 1124 250 326 83 29 chr12 70767625 70767865 -50489665 - L1MD LINE L1 -1097 5049 4797 6 1124 260 167 45 91 chr12 70767914 70767930 -50489600 + ID SINE ID 70 82 -142 6 1124 336 267 111 0 chr12 70767930 70768020 -50489510 + PB1D10 SINE Alu 1 100 -17 6 1124 488 286 84 19 chr12 70768063 70768277 -50489253 - L1M5 LINE L1 -1443 4703 4476 6 1124 257 247 13 25 chr12 70768281 70768360 -50489170 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 6 1124 249 303 61 0 chr12 70768364 70768430 -50489100 - B4A SINE B4 -4 288 219 6 1124 596 192 136 15 chr12 70768439 70768571 -50488959 - B1_Mur2 SINE Alu -1 148 1 6 1124 569 174 31 0 chr12 70768742 70768840 -50488690 - B1_Mur4 SINE Alu -11 139 39 6 1124 247 196 0 0 chr12 70768873 70768929 -50488601 + T-rich Low_complexity Low_complexity 1 56 0 6 1124 367 234 0 0 chr12 70768963 70769036 -50488494 - ID4 SINE ID -10 73 1 6 1124 1462 59 48 5 chr12 70769046 70769232 -50488298 - B2_Mm2 SINE B2 -1 194 1 6 1124 359 261 152 9 chr12 70769242 70769354 -50488176 - B1F SINE Alu -1 148 21 6 1124 457 302 33 38 chr12 70769462 70769672 -50487858 + L1ME1 LINE L1 5775 5983 -196 6 1124 252 0 0 0 chr12 70769679 70769707 -50487823 + (GGGGA)n Simple_repeat Simple_repeat 4 31 0 6 1124 456 326 35 0 chr12 70769756 70769900 -50487630 - B1F SINE Alu 0 149 1 6 1124 392 214 9 28 chr12 70769916 70770022 -50487508 + L1MA10 LINE L1 6229 6332 -2 6 1124 21 0 0 0 chr12 70770435 70770456 -50487074 + AT_rich Low_complexity Low_complexity 1 21 0 6 1124 806 40 0 0 chr12 70770535 70770634 -50486896 + B1_Mus1 SINE Alu 37 135 -13 6 1124 203 0 37 0 chr12 70770636 70770663 -50486867 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1124 525 294 100 48 chr12 70770837 70771108 -50486422 + B4A SINE B4 3 287 -5 6 1124 268 312 13 0 chr12 70771275 70771352 -50486178 - ID4_ SINE ID -4 79 2 6 1124 374 254 79 35 chr12 70771358 70771472 -50486058 - MLT1E1A LTR MaLR -372 281 163 6 1124 337 302 11 23 chr12 70771521 70771609 -50485921 - B3A SINE B2 -51 147 61 6 1124 250 220 282 35 chr12 70772179 70772264 -50485266 + PB1D10 SINE Alu 4 109 -8 6 1124 401 284 129 74 chr12 70772480 70772860 -50484670 + Charlie2a DNA MER1_type 1643 2043 -818 6 1124 1250 42 0 0 chr12 70772874 70773016 -50484514 + B1_Mm SINE Alu 5 146 -1 6 1124 481 277 61 15 chr12 70773113 70773245 -50484285 - B1F1 SINE Alu -2 147 10 6 1124 694 314 28 23 chr12 70773246 70773461 -50484069 + B3 SINE B2 1 216 0 6 1124 667 264 97 0 chr12 70773463 70773732 -50483798 + Charlie2a DNA MER1_type 2384 2678 -183 6 1124 1203 70 0 0 chr12 70773753 70773896 -50483634 + B1_Mm SINE Alu 2 144 -3 6 1124 207 0 0 0 chr12 70773896 70773919 -50483611 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1124 922 219 0 0 chr12 70773933 70774097 -50483433 - B3 SINE B2 -25 191 28 6 1124 292 229 47 9 chr12 70774179 70774285 -50483245 + Charlie2a DNA MER1_type 2687 2796 -65 6 1124 220 282 13 0 chr12 70774411 70774489 -50483041 + GA-rich Low_complexity Low_complexity 3 81 0 6 1124 391 115 12 37 chr12 70774747 70774828 -50482702 + GA-rich Low_complexity Low_complexity 4 82 0 6 1124 21 0 0 0 chr12 70775492 70775513 -50482017 + AT_rich Low_complexity Low_complexity 1 21 0 6 1124 1400 79 6 0 chr12 70777899 70778076 -50479454 + B2_Mm2 SINE B2 3 180 -15 6 1124 243 0 0 0 chr12 70778076 70778103 -50479427 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 140 313 39 0 38 chr12 70778861 70778914 -50478616 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1125 313 242 44 0 chr12 70779085 70779176 -50478354 - RSINE1 SINE B4 0 165 71 6 1125 198 103 0 0 chr12 70779176 70779205 -50478325 + (TCC)n Simple_repeat Simple_repeat 2 30 0 6 1125 972 132 21 0 chr12 70779213 70779357 -50478173 - B1_Mur1 SINE Alu -1 148 2 6 1125 240 191 0 0 chr12 70779415 70779462 -50478068 - U6 snRNA snRNA -59 48 2 7 1125 545 215 0 0 chr12 70779917 70780024 -50477506 + ID_B1 SINE B4 118 224 0 7 1125 963 141 0 0 chr12 70780233 70780382 -50477148 + B1_Mur4 SINE Alu 1 149 -1 7 1125 212 264 0 0 chr12 70780390 70780443 -50477087 + B1_Mur4 SINE Alu 96 148 -2 7 1125 249 33 0 0 chr12 70781274 70781304 -50476226 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 7 1125 454 79 13 13 chr12 70781455 70781532 -50475998 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1125 353 281 28 92 chr12 70781538 70781679 -50475851 - RSINE1 SINE B4 -31 134 3 7 1125 22 0 0 0 chr12 70781799 70781821 -50475709 + GC_rich Low_complexity Low_complexity 1 22 0 7 1125 42 82 0 0 chr12 70782642 70782740 -50474790 + GC_rich Low_complexity Low_complexity 1 98 0 7 1125 300 91 0 0 chr12 70782961 70783005 -50474525 + (CCG)n Simple_repeat Simple_repeat 1 44 0 7 1125 205 89 22 22 chr12 70783076 70783122 -50474408 + (CCG)n Simple_repeat Simple_repeat 1 46 0 7 1125 189 0 0 0 chr12 70783604 70783625 -50473905 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1125 391 274 35 62 chr12 70784133 70784277 -50473253 + RSINE1 SINE B4 25 164 -1 7 1125 536 300 92 39 chr12 70784526 70784831 -50472699 + MER102b DNA MER1_type 21 341 0 7 1125 282 299 141 26 chr12 70785229 70785421 -50472109 + L1MC LINE L1 5311 5524 -2358 7 1125 261 304 13 0 chr12 70785494 70785573 -50471957 + L1MC LINE L1 5633 5712 -2170 7 1125 213 121 0 0 chr12 70785584 70785617 -50471913 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1125 856 243 9 27 chr12 70785699 70785919 -50471611 - B3 SINE B2 0 216 1 7 1125 207 0 0 0 chr12 70786042 70786065 -50471465 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1125 21 0 0 0 chr12 70786989 70787010 -50470520 + AT_rich Low_complexity Low_complexity 1 21 0 7 1125 180 0 0 0 chr12 70787262 70787282 -50470248 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 1125 981 74 67 7 chr12 70787286 70787435 -50470095 - B2_Mm2 SINE B2 -37 158 1 7 1125 27 0 0 0 chr12 70787888 70787915 -50469615 + AT_rich Low_complexity Low_complexity 1 27 0 7 1125 671 120 0 0 chr12 70787937 70788037 -50469493 + B1_Mur3 SINE Alu 41 140 -9 7 1125 1284 82 47 32 chr12 70788145 70788335 -50469195 + B2_Mm2 SINE B2 2 194 -1 7 1125 204 40 0 0 chr12 70788381 70788406 -50469124 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1125 271 177 123 25 chr12 70788406 70788487 -50469043 - PB1D9 SINE Alu -10 110 22 7 1125 450 255 96 51 chr12 70788867 70789024 -50468506 + RSINE1 SINE B4 2 165 0 7 1125 23 0 0 0 chr12 70789025 70789048 -50468482 + AT_rich Low_complexity Low_complexity 1 23 0 7 1125 1269 34 0 0 chr12 70789124 70789272 -50468258 + B1_Mus1 SINE Alu 1 148 0 7 1125 399 127 0 0 chr12 70789275 70789338 -50468192 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 7 1125 322 306 60 10 chr12 70789833 70789948 -50467582 - B1F SINE Alu 0 120 1 7 1125 2040 198 126 29 chr12 70790005 70790529 -50467001 - RMER15 LTR ERVL 0 575 1 7 1125 826 132 80 7 chr12 70790559 70790696 -50466834 - B1_Mus1 SINE Alu 0 148 2 7 1125 252 154 77 0 chr12 70790707 70790759 -50466771 - B3 SINE B2 -7 209 154 7 1125 879 122 265 0 chr12 70790779 70790925 -50466605 - RMER6A LTR ERVK 0 756 570 7 1125 246 32 0 0 chr12 70790925 70790956 -50466574 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 7 1125 1111 142 37 42 chr12 70790956 70791284 -50466246 - RMER6A LTR ERVK -379 377 1 7 1125 544 189 0 0 chr12 70791284 70791374 -50466156 - B3 SINE B2 -126 90 1 7 1125 23 54 0 0 chr12 70791423 70791460 -50466070 + AT_rich Low_complexity Low_complexity 1 37 0 7 1125 288 200 0 0 chr12 70792264 70792329 -50465201 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1125 225 94 0 0 chr12 70792348 70792380 -50465150 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1125 22 0 0 0 chr12 70793115 70793137 -50464393 + AT_rich Low_complexity Low_complexity 1 22 0 7 1125 21 71 0 0 chr12 70793896 70793938 -50463592 + AT_rich Low_complexity Low_complexity 1 42 0 7 1125 246 32 0 0 chr12 70794095 70794126 -50463404 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1125 664 107 8 97 chr12 70794126 70794260 -50463270 - B1_Mur2 SINE Alu -1 148 27 7 1125 368 231 0 0 chr12 70794295 70794373 -50463157 - ID_B1 SINE B4 0 224 147 7 1125 242 236 55 14 chr12 70794996 70795069 -50462461 - ID_B1 SINE B4 -73 151 76 7 1125 1162 130 11 5 chr12 70795154 70795339 -50462191 + B2_Mm2 SINE B2 2 187 -8 7 1125 630 33 0 100 chr12 70797256 70797356 -50460174 - B1_Mus2 SINE Alu -11 136 47 7 1125 1071 77 0 34 chr12 70797675 70797822 -50459708 + B1_Mus1 SINE Alu 2 143 -5 7 1125 430 246 70 11 chr12 70797881 70798037 -50459493 + MER20 DNA MER1_type 2 176 -607 7 1125 30 27 0 0 chr12 70798718 70798755 -50458775 + AT_rich Low_complexity Low_complexity 1 37 0 7 1125 433 265 43 14 chr12 70799876 70800014 -50457516 + B3A SINE B2 57 198 0 7 1125 1196 58 11 86 chr12 70800077 70800264 -50457266 + B2_Mm1a SINE B2 2 174 -19 7 1125 445 220 73 48 chr12 70801091 70801215 -50456315 + B4A SINE B4 126 252 -40 7 1125 351 0 0 0 chr12 70801610 70801649 -50455881 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1125 180 0 0 0 chr12 70801774 70801794 -50455736 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 7 1125 1007 93 0 0 chr12 70801796 70801936 -50455594 - B1_Mus1 SINE Alu -6 142 3 7 1125 1473 63 0 0 chr12 70803453 70803628 -50453902 + B2_Mm1t SINE B2 1 175 -18 7 1125 213 39 0 0 chr12 70803649 70803675 -50453855 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1125 369 329 54 60 chr12 70804061 70804210 -50453320 + B1F1 SINE Alu 1 148 -1 7 1125 462 225 249 26 chr12 70804221 70804486 -50453044 + L1M2 LINE L1 4990 5313 -830 7 1125 775 151 0 11 chr12 70804488 70804643 -50452887 + B1_Mur3 SINE Alu 1 150 0 7 1125 331 231 37 28 chr12 70804644 70804751 -50452779 + L1M2 LINE L1 5323 5430 -882 7 1125 403 202 200 9 chr12 70804763 70804878 -50452652 + B1_Mur1 SINE Alu 5 141 -8 7 1125 1161 55 7 0 chr12 70805040 70805185 -50452345 - B1_Mus2 SINE Alu 0 147 2 7 1125 387 302 46 8 chr12 70805342 70805472 -50452058 + MLT1B LTR MaLR 240 374 -16 7 1125 371 250 54 39 chr12 70805552 70805681 -50451849 - MER20 DNA MER1_type -78 141 11 7 1125 634 198 24 18 chr12 70806265 70806430 -50451100 + B3 SINE B2 51 216 0 7 1125 236 342 14 0 chr12 70806571 70806644 -50450886 + B4 SINE B4 215 288 -4 7 1125 1138 95 0 0 chr12 70807003 70807150 -50450380 - B1_Mus1 SINE Alu -1 147 1 7 1125 189 229 0 0 chr12 70808456 70808504 -50449026 + (CATA)n Simple_repeat Simple_repeat 4 51 0 7 1125 205 244 0 0 chr12 70808523 70808564 -50448966 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1125 1004 82 0 0 chr12 70808634 70808780 -50448750 - B1_Mm SINE Alu 0 147 2 7 1125 222 37 0 0 chr12 70809213 70809240 -50448290 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 1125 1324 78 50 0 chr12 70809430 70809609 -50447921 + B2_Mm2 SINE B2 2 189 -6 7 1125 288 70 0 0 chr12 70811669 70811712 -50445818 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 7 1125 836 48 153 38 chr12 70811712 70811835 -50445695 - B1_Mm SINE Alu -8 139 1 7 1125 912 67 0 0 chr12 70812390 70812510 -50445020 + (CA)n Simple_repeat Simple_repeat 1 120 0 7 1125 650 250 83 88 chr12 70812583 70813101 -50444429 + L1M5 LINE L1 4924 5448 -725 7 1125 577 239 109 68 chr12 70813302 70813567 -50443963 + L1M5 LINE L1 5448 5723 -450 7 1125 844 49 195 0 chr12 70813953 70814076 -50443454 + B1_Mus2 SINE Alu 1 147 0 7 1125 1066 196 25 0 chr12 70814267 70814471 -50443059 - B3 SINE B2 -6 210 2 7 1125 290 159 62 16 chr12 70814878 70814942 -50442588 + L1M4 LINE L1 5173 5239 -907 7 1125 216 0 0 0 chr12 70814964 70814988 -50442542 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1125 1140 82 7 0 chr12 70814988 70815135 -50442395 - B1_Mus1 SINE Alu 0 148 1 7 1125 261 270 11 35 chr12 70815192 70815288 -50442242 + L1M4 LINE L1 3703 3796 -2350 7 1125 447 362 7 0 chr12 70815383 70815524 -50442006 + RSINE1 SINE B4 2 143 -22 7 1125 422 182 17 60 chr12 70815633 70815689 -50441841 + L1M4 LINE L1 4359 4413 -1733 7 1125 1392 61 67 0 chr12 70815689 70815869 -50441661 + B2_Mm2 SINE B2 1 192 -3 7 1125 422 182 17 60 chr12 70815869 70815929 -50441601 + L1M4 LINE L1 4414 4470 -1676 7 1125 396 155 71 0 chr12 70815929 70816013 -50441517 + B1_Mus2 SINE Alu 1 90 -30 7 1125 316 261 192 51 chr12 70816062 70816251 -50441279 + L1MA8 LINE L1 5921 6145 -146 7 1125 831 161 48 27 chr12 70816251 70816398 -50441132 + B1_Mur4 SINE Alu 1 150 0 7 1125 316 261 192 51 chr12 70816398 70816442 -50441088 + L1MA8 LINE L1 6146 6187 -104 7 1125 29 0 0 0 chr12 70816554 70816583 -50440947 + AT_rich Low_complexity Low_complexity 1 29 0 7 1125 981 295 14 25 chr12 70816583 70816868 -50440662 + B4A SINE B4 10 291 -1 7 1125 257 316 0 2 chr12 70816985 70817076 -50440454 - L1MA7 LINE L1 -281 6010 5921 7 1125 1346 204 45 26 chr12 70817118 70817470 -50440060 + RLTR10D LTR ERVK 1 359 0 7 1125 486 196 29 0 chr12 70817482 70817584 -50439946 + IAP-d-int LTR ERVK 37 141 -6401 7 1125 6752 269 22 11 chr12 70817608 70819615 -50437915 + IAP-d-int LTR ERVK 3148 5176 -1366 7 1125 2616 226 2 5 chr12 70819603 70820191 -50437339 + IAP-d-int LTR ERVK 5474 6059 -483 7 1125 2267 147 22 11 chr12 70820234 70820605 -50436925 + IAP-d-int LTR ERVK 6168 6542 0 7 1125 1279 180 92 30 chr12 70820605 70820943 -50436587 + RLTR10D LTR ERVK 1 359 0 7 1125 294 106 0 0 chr12 70821017 70821064 -50436466 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1125 1061 58 43 0 chr12 70821137 70821275 -50436255 + B1_Mm SINE Alu 3 146 -1 7 1125 287 43 64 0 chr12 70821276 70821323 -50436207 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 7 1125 238 286 0 13 chr12 70821342 70821420 -50436110 + PB1D10 SINE Alu 41 117 0 7 1125 1200 292 102 43 chr12 70821444 70822114 -50435416 + L1MB7 LINE L1 5417 6125 -59 7 1125 21 0 0 0 chr12 70822470 70822491 -50435039 + AT_rich Low_complexity Low_complexity 1 21 0 7 1125 327 291 0 0 chr12 70822885 70822988 -50434542 + LTR16E1 LTR ERVL 435 537 -1 7 1125 774 186 0 0 chr12 70823216 70823356 -50434174 + B2_Mm2 SINE B2 1 140 -55 7 1125 462 203 77 95 chr12 70823791 70823960 -50433570 + RLTR14 LTR ERV1 7 172 -210 7 1125 286 230 180 0 chr12 70824179 70824279 -50433251 + L1MD2 LINE L1 6092 6209 -150 8 1125 244 119 48 63 chr12 70824324 70824387 -50433143 + L1MC4a LINE L1 7820 7881 -1 8 1125 424 337 42 12 chr12 70824389 70824554 -50432976 + B4A SINE B4 2 171 -121 8 1125 358 198 216 0 chr12 70824603 70824719 -50432811 + B1_Mus1 SINE Alu 6 146 -2 8 1125 324 0 0 0 chr12 70824732 70824768 -50432762 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1125 219 167 0 0 chr12 70824768 70824810 -50432720 + GA-rich Low_complexity Low_complexity 2 43 0 8 1125 402 223 19 28 chr12 70824855 70824961 -50432569 + B1_Mur2 SINE Alu 11 115 -34 8 1125 532 230 91 38 chr12 70826384 70826588 -50430942 - B3 SINE B2 0 195 1 8 1125 1056 201 134 32 chr12 70826650 70826994 -50430536 - RMER16 LTR ERVK 0 533 155 8 1125 597 292 121 24 chr12 70827046 70827229 -50430301 - Lx5 LINE L1 -82 6968 6768 8 1125 1476 32 21 26 chr12 70827229 70827389 -50430141 + B2_Mm1a SINE B2 2 160 -33 8 1125 243 0 0 0 chr12 70827389 70827416 -50430114 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1125 1476 32 21 26 chr12 70827416 70827448 -50430082 + B2_Mm1a SINE B2 161 193 0 8 1125 597 292 121 24 chr12 70827448 70827513 -50430017 - Lx5 LINE L1 -283 6767 6696 8 1125 246 125 0 0 chr12 70828055 70828095 -50429435 - L1MD2 LINE L1 -30 6329 6290 8 1125 1004 230 91 5 chr12 70828101 70828453 -50429077 - MTD LTR MaLR 0 419 8 8 1125 391 199 72 51 chr12 70828456 70828562 -50428968 - MTD-int LTR MaLR 0 1258 1153 8 1125 841 246 56 5 chr12 70828562 70828758 -50428772 - B3 SINE B2 -10 206 1 8 1125 391 199 72 51 chr12 70828758 70828789 -50428741 - MTD-int LTR MaLR -106 1152 1118 8 1125 2443 234 57 38 chr12 70829337 70830161 -50427369 - MERVL_2A-int LTR ERVL -3918 1796 948 8 1125 529 267 77 50 chr12 70830165 70830465 -50427065 - RMER10A LTR ERVL -13 429 122 8 1125 411 272 22 22 chr12 70830510 70830649 -50426881 - RLTR19-int LTR ERVK -1761 4376 4238 8 1125 947 196 77 95 chr12 70830777 70831115 -50426415 - RLTR19-int LTR ERVK -2200 3937 3606 8 1125 318 236 40 79 chr12 70831250 70831351 -50426179 - RLTR19-int LTR ERVK -2852 3285 3189 8 1125 497 155 86 154 chr12 70831573 70831748 -50425782 - RLTR19-int LTR ERVK -3114 3023 2861 8 1125 519 245 105 60 chr12 70831795 70832129 -50425401 - RLTR19-int LTR ERVK -1397 1841 1493 8 1125 342 231 33 11 chr12 70832141 70832233 -50425297 - RLTR19-int LTR ERVK -3689 2448 2355 8 1125 1123 56 14 14 chr12 70832258 70832404 -50425126 - B1_Mus1 SINE Alu -1 147 2 8 1125 279 103 76 139 chr12 70832424 70832455 -50425075 - RLTR19-int LTR ERVK -3395 2127 2107 8 1125 1447 75 21 0 chr12 70832455 70832641 -50424889 - B2_Mm2 SINE B2 -4 191 2 8 1125 279 103 76 139 chr12 70832641 70832688 -50424842 - RLTR19-int LTR ERVK -3416 2106 2054 8 1125 280 208 0 0 chr12 70832900 70832948 -50424582 - RLTR19-int LTR ERVK -3727 1795 1748 8 1125 1369 169 146 38 chr12 70833130 70833499 -50424031 - RLTR9E LTR ERVK 0 409 1 8 1125 1733 178 22 46 chr12 70833689 70833822 -50423708 - RMER12B LTR ERVK -861 543 415 8 1125 1656 42 0 0 chr12 70833822 70834014 -50423516 - B2_Mm1a SINE B2 0 193 2 8 1125 1733 178 22 46 chr12 70834014 70834251 -50423279 - RMER12B LTR ERVK -990 414 182 8 1125 1209 15 0 0 chr12 70834261 70834396 -50423134 + B1_Mm SINE Alu 1 135 -12 8 1125 459 0 0 0 chr12 70834414 70834465 -50423065 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1125 21 82 0 0 chr12 70834791 70834840 -50422690 + AT_rich Low_complexity Low_complexity 1 49 0 8 1125 645 108 0 10 chr12 70835170 70835273 -50422257 + B2_Mm2 SINE B2 2 103 -92 8 1125 317 79 310 34 chr12 70835343 70835459 -50422071 + B2_Mm2 SINE B2 47 194 -1 8 1125 570 184 46 0 chr12 70835479 70835588 -50421942 - B1F2 SINE Alu -7 142 29 8 1125 752 88 9 0 chr12 70835860 70835974 -50421556 + (TGGA)n Simple_repeat Simple_repeat 4 118 0 8 1125 237 308 31 0 chr12 70836242 70836307 -50421223 + ID4 SINE ID 16 82 -1 8 1125 185 194 0 0 chr12 70836572 70836608 -50420922 - L4 LINE RTE -3 2026 1991 8 1125 296 257 76 0 chr12 70836617 70836722 -50420808 + MIR3 SINE MIR 96 208 0 8 1125 453 19 0 0 chr12 70836826 70836880 -50420650 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1125 1133 224 48 19 chr12 70836914 70836970 -50420560 - B4A SINE B4 -7 285 233 8 1125 2619 120 16 0 chr12 70836970 70837346 -50420184 - RLTR14 LTR ERV1 0 382 1 8 1125 1133 224 48 19 chr12 70837346 70837558 -50419972 - B4A SINE B4 -60 232 9 8 1125 182 299 45 0 chr12 70837575 70837642 -50419888 + L2 LINE L2 2516 2585 -834 8 1125 523 279 0 16 chr12 70837787 70837911 -50419619 - PB1 SINE Alu -5 122 1 8 1125 1037 92 16 84 chr12 70839294 70839399 -50418131 + B2_Mm1t SINE B2 2 98 -95 8 1125 418 91 52 0 chr12 70839399 70839476 -50418054 - L1Md_F2 LINE L1 0 6582 6502 8 1125 1037 92 16 84 chr12 70839476 70839561 -50417969 + B2_Mm1t SINE B2 99 179 -14 8 1125 405 94 349 28 chr12 70839598 70839707 -50417823 + B2_Mm2 SINE B2 47 190 -5 8 1125 619 216 227 0 chr12 70839709 70839885 -50417645 - B3 SINE B2 0 216 1 8 1125 266 194 0 14 chr12 70839925 70839998 -50417532 + CT-rich Low_complexity Low_complexity 2 73 0 8 1125 1239 27 0 13 chr12 70840002 70840151 -50417379 - B1_Mus1 SINE Alu 0 148 2 8 1125 425 215 0 0 chr12 70840309 70840388 -50417142 + B1_Mur4 SINE Alu 10 88 -62 8 1125 431 226 5 85 chr12 70840371 70840594 -50416936 + RMER17C LTR ERVK 66 270 -140 8 1125 1213 54 0 0 chr12 70840595 70840743 -50416787 + B1_Mus1 SINE Alu 1 148 0 8 1125 203 175 0 0 chr12 70840743 70840783 -50416747 + A-rich Low_complexity Low_complexity 1 40 0 8 1125 311 211 0 0 chr12 70840783 70840840 -50416690 + B1_Mus2 SINE Alu 70 126 -21 8 1125 222 37 0 0 chr12 70841033 70841060 -50416470 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 8 1125 914 120 23 0 chr12 70841060 70841193 -50416337 - B1_Mur3 SINE Alu -13 136 1 8 1125 234 272 32 163 chr12 70841289 70841412 -50416118 + B4 SINE B4 29 135 -157 8 1125 214 200 0 22 chr12 70841501 70841547 -50415983 + A-rich Low_complexity Low_complexity 3 47 0 8 1125 720 147 47 0 chr12 70841673 70841802 -50415728 - B1_Mur4 SINE Alu -14 136 2 8 1125 942 202 98 0 chr12 70842918 70843111 -50414419 - B3 SINE B2 0 216 5 8 1125 719 261 24 72 chr12 70843123 70843416 -50414114 + B4A SINE B4 14 292 0 8 1125 644 227 0 0 chr12 70843484 70843603 -50413927 - B1_Mur1 SINE Alu -29 120 2 8 1125 358 314 41 33 chr12 70843495 70843617 -50413913 - B4 SINE B4 -94 198 76 8 1125 216 0 0 0 chr12 70845067 70845091 -50412439 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 1125 21 57 0 0 chr12 70845579 70845614 -50411916 + AT_rich Low_complexity Low_complexity 1 35 0 8 1125 1423 69 16 5 chr12 70846671 70846861 -50410669 + B2_Mm2 SINE B2 2 193 -2 8 1125 567 180 0 0 chr12 70846927 70847038 -50410492 + (TA)n Simple_repeat Simple_repeat 1 111 0 8 1125 1319 7 0 0 chr12 70847318 70847464 -50410066 + B1_Mus2 SINE Alu 1 146 -1 8 1125 201 39 0 0 chr12 70847465 70847491 -50410039 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1125 23 33 0 0 chr12 70847608 70847638 -50409892 + AT_rich Low_complexity Low_complexity 1 30 0 8 1125 1165 54 0 0 chr12 70847638 70847785 -50409745 - B1_Mus2 SINE Alu 0 147 1 8 1125 846 90 0 0 chr12 70848578 70848700 -50408830 - B1_Mus1 SINE Alu -21 127 6 8 1125 918 167 79 120 chr12 70848707 70848973 -50408557 + ORR1C2 LTR MaLR 130 384 0 8 1125 1088 58 0 0 chr12 70849433 70849570 -50407960 + B1_Mus1 SINE Alu 3 139 -9 8 1125 809 210 80 0 chr12 70850053 70850253 -50407277 - B3 SINE B2 0 216 1 8 1125 715 246 72 14 chr12 70850266 70850489 -50407041 - L1MA5 LINE L1 -7 6293 6058 8 1125 940 193 59 25 chr12 70851003 70851205 -50406325 - B3 SINE B2 0 216 8 8 1125 180 0 0 0 chr12 70851347 70851367 -50406163 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 8 1125 1171 64 0 0 chr12 70851367 70851524 -50406006 - B2_Mm2 SINE B2 -33 162 6 8 1125 290 162 123 68 chr12 70853394 70853467 -50404063 - ID4 SINE ID -1 82 6 8 1125 387 145 0 0 chr12 70853675 70853707 -50403823 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1125 1236 48 0 0 chr12 70853707 70853854 -50403676 + B1_Mus2 SINE Alu 1 147 0 8 1125 387 145 0 0 chr12 70853854 70853897 -50403633 + (A)n Simple_repeat Simple_repeat 1 43 0 8 1125 463 250 63 24 chr12 70853939 70854004 -50403526 + ID_B1 SINE B4 93 157 -67 8 1125 702 242 38 38 chr12 70854004 70854214 -50403316 + B3 SINE B2 2 211 -5 8 1125 463 250 63 24 chr12 70854214 70854275 -50403255 + ID_B1 SINE B4 158 222 -2 8 1125 22 35 0 0 chr12 70854404 70854433 -50403097 + AT_rich Low_complexity Low_complexity 1 29 0 8 1125 243 284 52 0 chr12 70855806 70855940 -50401590 + (CAGAGA)n Simple_repeat Simple_repeat 5 145 0 8 1125 888 99 14 7 chr12 70856347 70856490 -50401040 + B1_Mus2 SINE Alu 3 146 -1 8 1125 258 313 63 81 chr12 70857730 70857904 -50399626 - MER5B DNA MER1_type -6 172 2 8 1125 299 197 0 32 chr12 70858531 70858594 -50398936 + MER53 DNA hAT 8 68 -125 8 1125 285 98 0 0 chr12 70859188 70859229 -50398301 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 8 1125 220 191 0 0 chr12 70860587 70860634 -50396896 + C-rich Low_complexity Low_complexity 1 47 0 8 1125 225 188 0 0 chr12 70861481 70861529 -50396001 + T-rich Low_complexity Low_complexity 1 48 0 8 1125 1227 47 0 0 chr12 70861529 70861677 -50395853 - B1_Mus1 SINE Alu 0 148 1 8 1125 438 195 32 96 chr12 70861679 70861804 -50395726 - PB1D10 SINE Alu 0 117 1 8 1125 189 0 0 0 chr12 70862238 70862259 -50395271 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 1125 1094 186 22 26 chr12 70862331 70862563 -50394967 + Lx4B LINE L1 6807 7037 -21 8 1125 252 0 0 0 chr12 70862563 70862591 -50394939 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 8 1125 252 0 0 0 chr12 70863469 70863497 -50394033 + (GA)n Simple_repeat Simple_repeat 2 29 0 8 1125 758 277 12 0 chr12 70863497 70863663 -50393867 - B3A SINE B2 -30 168 1 8 1125 322 264 9 78 chr12 70863885 70864000 -50393530 + ID_B1 SINE B4 69 175 -49 8 1125 496 219 9 0 chr12 70863916 70864021 -50393509 + PB1D10 SINE Alu 10 115 -2 8 1125 403 130 0 0 chr12 70864952 70865021 -50392509 - PB1D9 SINE Alu -3 117 49 8 1125 246 258 53 23 chr12 70865178 70865309 -50392221 + HAL1 LINE L1 1716 1850 -657 8 1125 22 0 0 0 chr12 70865343 70865365 -50392165 + AT_rich Low_complexity Low_complexity 1 22 0 9 1125 279 0 0 0 chr12 70865366 70865397 -50392133 + (CATA)n Simple_repeat Simple_repeat 3 33 0 9 1125 691 128 31 23 chr12 70865538 70865666 -50391864 + B1_Mur2 SINE Alu 1 129 -20 9 1125 606 273 55 5 chr12 70865759 70865958 -50391572 + B3 SINE B2 1 209 -7 9 1125 339 330 62 5 chr12 70866030 70866240 -50391290 - L1MC LINE L1 -2390 3756 3535 9 1125 373 235 10 20 chr12 70867018 70867118 -50390412 + MLT2B3 LTR ERVL 1 99 -455 9 1125 204 217 0 0 chr12 70867514 70867560 -50389970 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1125 845 324 69 37 chr12 70867846 70868224 -50389306 + MER21B LTR ERV1 292 681 -182 9 1125 192 40 0 0 chr12 70868224 70868249 -50389281 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1125 335 271 24 122 chr12 70868479 70868643 -50388887 + MER21B LTR ERV1 676 823 -40 9 1125 1148 76 121 12 chr12 70869498 70869671 -50387859 + B2_Mm2 SINE B2 1 192 -3 9 1125 540 151 20 0 chr12 70869706 70869852 -50387678 + (TCTA)n Simple_repeat Simple_repeat 1 149 0 9 1125 210 71 0 0 chr12 70870977 70871005 -50386525 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 1125 686 211 7 21 chr12 70871005 70871150 -50386380 - B1_Mur2 SINE Alu -5 144 2 9 1125 861 92 0 0 chr12 70871191 70871333 -50386197 + (CA)n Simple_repeat Simple_repeat 2 143 0 9 1125 1074 238 93 27 chr12 70871478 70871810 -50385720 - ORR1E LTR MaLR -5 354 1 9 1125 868 128 53 0 chr12 70871897 70872030 -50385500 + B1_Mus1 SINE Alu 1 140 -8 9 1125 633 61 0 0 chr12 70872143 70872225 -50385305 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 9 1125 1102 64 35 0 chr12 70872738 70872879 -50384651 - B1_Mm SINE Alu 0 147 2 9 1125 323 123 88 0 chr12 70873189 70873246 -50384284 + URR1B DNA MER1_type 59 120 -105 9 1125 329 313 205 29 chr12 70874505 70874586 -50382944 - RMER30 DNA MER1_type -1 201 88 9 1125 198 0 0 0 chr12 70874586 70874608 -50382922 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 9 1125 329 313 205 29 chr12 70874608 70874697 -50382833 - RMER30 DNA MER1_type -115 87 1 9 1125 25 31 0 0 chr12 70875072 70875104 -50382426 + AT_rich Low_complexity Low_complexity 1 32 0 9 1125 1075 103 0 0 chr12 70875104 70875249 -50382281 + B1_Mus1 SINE Alu 1 145 -3 9 1125 207 0 0 0 chr12 70875249 70875272 -50382258 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1125 360 226 290 19 chr12 70875282 70875306 -50382224 - B3 SINE B2 -9 207 186 9 1125 465 103 0 0 chr12 70875306 70875374 -50382156 + (TA)n Simple_repeat Simple_repeat 2 69 0 9 1125 360 226 290 19 chr12 70875374 70875511 -50382019 - B3 SINE B2 -31 185 2 9 1125 413 317 58 78 chr12 70875717 70876114 -50381416 + Charlie8 DNA MER1_type 54 442 -1986 9 1125 691 278 104 4 chr12 70879557 70879806 -50377724 + B4 SINE B4 1 274 -18 9 1125 453 76 0 0 chr12 70879830 70879896 -50377634 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1125 367 286 62 0 chr12 70879908 70880020 -50377510 + L1MA7 LINE L1 6160 6278 -13 9 1125 21 36 0 0 chr12 70880059 70880087 -50377443 + AT_rich Low_complexity Low_complexity 1 28 0 9 1125 340 271 153 15 chr12 70880775 70881150 -50376380 + L1MC4 LINE L1 6778 7212 -670 9 1125 501 166 44 47 chr12 70881205 70881359 -50376171 - B1_Mur2 SINE Alu 0 149 1 9 1125 2324 106 55 33 chr12 70881381 70881808 -50375722 + RMER16 LTR ERVK 11 533 0 9 1125 231 286 133 0 chr12 70881847 70881952 -50375578 + L1MC4 LINE L1 7701 7819 -223 9 1125 252 282 0 0 chr12 70882347 70882418 -50375112 + RSINE1 SINE B4 87 157 -8 9 1125 255 391 66 19 chr12 70883639 70883850 -50373680 - MER106A DNA MER1_type -14 222 2 9 1125 512 287 37 37 chr12 70883856 70884019 -50373511 + RSINE1 SINE B4 3 165 0 9 1125 540 262 35 70 chr12 70884055 70884227 -50373303 + B4 SINE B4 1 166 -126 9 1125 284 119 14 29 chr12 70884227 70884296 -50373234 + RMER17C LTR ERVK 343 410 0 9 1125 338 107 18 0 chr12 70884572 70884628 -50372902 + (GGGAGA)n Simple_repeat Simple_repeat 5 61 0 9 1125 644 0 0 13 chr12 70884628 70884705 -50372825 + (GAGAA)n Simple_repeat Simple_repeat 5 80 0 9 1125 347 331 0 53 chr12 70885166 70885335 -50372195 + (TG)n Simple_repeat Simple_repeat 1 160 0 9 1125 363 325 0 53 chr12 70885397 70885566 -50371964 + (TG)n Simple_repeat Simple_repeat 1 160 0 9 1125 408 314 49 90 chr12 70885640 70885799 -50371731 - B4A SINE B4 -55 237 87 9 1125 180 0 0 0 chr12 70885799 70885819 -50371711 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 1125 408 314 49 90 chr12 70885819 70885904 -50371626 - B4A SINE B4 -206 86 3 9 1125 747 200 0 35 chr12 70885936 70885948 -50371582 - B1_Mur2 SINE Alu 0 149 140 9 1125 243 0 0 0 chr12 70885948 70885975 -50371555 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1125 747 200 0 35 chr12 70885975 70886107 -50371423 - B1_Mur2 SINE Alu -10 139 10 9 1125 423 0 0 0 chr12 70886892 70886939 -50370591 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1125 423 0 0 0 chr12 70886939 70886985 -50370545 + (TA)n Simple_repeat Simple_repeat 1 47 0 9 1125 690 54 207 0 chr12 70886996 70887107 -50370423 - B1_Mus2 SINE Alu -1 146 13 9 1125 245 172 29 72 chr12 70888106 70888175 -50369355 + ID2 SINE ID 3 68 -15 9 1125 861 164 14 0 chr12 70888419 70888565 -50368965 + B1_Mur4 SINE Alu 3 150 0 9 1125 276 154 0 0 chr12 70888566 70888618 -50368912 + CT-rich Low_complexity Low_complexity 2 53 0 9 1125 587 257 37 0 chr12 70889749 70889885 -50367645 - RSINE1 SINE B4 -21 144 4 9 1125 285 29 0 0 chr12 70889885 70889919 -50367611 + (TTA)n Simple_repeat Simple_repeat 2 35 0 9 1125 225 351 0 0 chr12 70889939 70890016 -50367514 + ID4_ SINE ID 3 79 -4 9 1125 417 286 231 35 chr12 70890404 70890607 -50366923 + B4A SINE B4 50 292 0 9 1125 192 231 0 0 chr12 70890607 70890659 -50366871 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1125 896 291 16 28 chr12 70892486 70892804 -50364726 - L1ME1 LINE L1 -228 5951 5638 9 1125 248 219 176 48 chr12 70892836 70892904 -50364626 - L1ME1 LINE L1 -622 5557 5473 9 1125 1328 77 5 27 chr12 70892904 70893090 -50364440 - B2_Mm1a SINE B2 -8 185 4 9 1125 248 219 176 48 chr12 70893090 70893146 -50364384 - L1ME1 LINE L1 -707 5472 5417 9 1125 189 0 0 0 chr12 70893280 70893301 -50364229 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 9 1125 284 207 35 0 chr12 70893653 70893711 -50363819 + MLT1F2 LTR MaLR 5 64 -496 9 1125 508 222 14 14 chr12 70893711 70893857 -50363673 - RCHARR1 DNA MER1_type -2 972 827 9 1125 404 264 83 23 chr12 70893859 70893991 -50363539 + ID_B1 SINE B4 80 219 -5 9 1125 285 98 0 0 chr12 70894008 70894049 -50363481 + (TC)n Simple_repeat Simple_repeat 1 41 0 9 1125 1288 250 131 127 chr12 70894058 70894181 -50363349 - RCHARR1 DNA MER1_type -141 833 666 9 1125 1206 55 0 7 chr12 70894181 70894329 -50363201 + B1_Mm SINE Alu 1 147 0 9 1125 1288 250 131 127 chr12 70894329 70895008 -50362522 - RCHARR1 DNA MER1_type -309 665 28 9 1125 231 276 153 0 chr12 70895034 70895132 -50362398 + MLT1F2 LTR MaLR 93 205 -355 9 1125 291 283 62 23 chr12 70895626 70895803 -50361727 - B4A SINE B4 -101 191 8 9 1125 298 303 83 24 chr12 70895850 70896019 -50361511 - L1ME1 LINE L1 -2239 3907 3729 9 1125 677 222 79 21 chr12 70896028 70896217 -50361313 - B3 SINE B2 0 216 17 9 1125 207 0 0 0 chr12 70896283 70896306 -50361224 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 9 1125 768 302 69 43 chr12 70896380 70897175 -50360355 - L1ME1 LINE L1 -2564 3582 2767 9 1125 355 233 113 7 chr12 70897160 70897311 -50360219 - L1ME1 LINE L1 -3276 2870 2704 9 1125 423 0 0 0 chr12 70897796 70897843 -50359687 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1125 1385 85 16 16 chr12 70899037 70899229 -50358301 + B2_Mm2 SINE B2 2 193 -2 9 1125 635 66 0 21 chr12 70899285 70899378 -50358152 - B1_Mus2 SINE Alu -6 141 51 9 1125 1284 29 0 28 chr12 70899380 70899557 -50357973 + B2_Mm1a SINE B2 21 192 -1 9 1125 450 78 0 0 chr12 70899556 70899620 -50357910 - B1_Mus1 SINE Alu -83 65 2 9 1125 1113 114 165 5 chr12 70899725 70899919 -50357611 + URR1B DNA MER1_type 1 225 0 9 1125 563 251 107 12 chr12 70899946 70900115 -50357415 - B3 SINE B2 0 216 32 9 1125 241 306 43 77 chr12 70900717 70900834 -50356696 + B4A SINE B4 132 244 -48 9 1125 284 0 28 0 chr12 70900865 70900901 -50356629 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1125 721 167 0 92 chr12 70900955 70901107 -50356423 - B1_Mus1 SINE Alu -2 146 9 9 1125 2032 132 168 2 chr12 70901273 70901697 -50355833 - RLTR28 LTR ERVL -13 511 18 9 1125 881 169 179 11 chr12 70902636 70902815 -50354715 - B3 SINE B2 -5 211 3 9 1125 518 331 111 18 chr12 70902929 70903317 -50354213 - L1_Rod LINE L1 -648 5199 4776 9 1125 1644 32 21 0 chr12 70903384 70903573 -50353957 - B2_Mm1a SINE B2 0 193 1 9 1125 386 239 53 44 chr12 70903861 70903975 -50353555 - PB1D10 SINE Alu 0 117 3 9 1125 1186 75 0 0 chr12 70904010 70904157 -50353373 - B1_Mus1 SINE Alu 0 148 2 9 1125 24 0 0 0 chr12 70904261 70904285 -50353245 + GC_rich Low_complexity Low_complexity 1 24 0 9 1125 334 204 122 74 chr12 70904555 70904703 -50352827 - RSINE1 SINE B4 -7 158 4 9 1125 211 305 156 28 chr12 70904769 70904921 -50352609 + MIRc SINE MIR 8 179 -89 9 1125 207 0 0 0 chr12 70906469 70906492 -50351038 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1125 1183 61 0 0 chr12 70906492 70906629 -50350901 - B1_Mus2 SINE Alu -9 138 2 9 1125 207 0 0 0 chr12 70906629 70906652 -50350878 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1125 416 336 72 0 chr12 70907193 70907318 -50350212 + RSINE1 SINE B4 21 154 -11 9 1125 218 250 17 0 chr12 70909262 70909322 -50348208 + ID4 SINE ID 3 63 -20 9 1125 27 0 0 0 chr12 70909575 70909602 -50347928 + AT_rich Low_complexity Low_complexity 1 27 0 9 1125 200 328 0 0 chr12 70909829 70909893 -50347637 + MIR SINE MIR 155 218 -44 9 1126 299 25 0 24 chr12 70910380 70910421 -50347109 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1126 219 244 252 0 chr12 70910421 70910544 -50346986 - B3A SINE B2 -44 154 1 9 1126 22 0 0 0 chr12 70910888 70910910 -50346620 + AT_rich Low_complexity Low_complexity 1 22 0 9 1126 23 33 0 0 chr12 70911664 70911694 -50345836 + AT_rich Low_complexity Low_complexity 1 30 0 9 1126 509 221 50 58 chr12 70911883 70912022 -50345508 - B1_Mur1 SINE Alu -6 143 6 9 1126 299 331 25 69 chr12 70912022 70912039 -50345491 - ID_B1 SINE B4 -3 218 70 1 1126 1595 37 5 5 chr12 70912442 70912633 -50344897 - B2_Mm1a SINE B2 -2 191 1 1 1126 266 283 82 119 chr12 70914756 70915169 -50342361 + RMER10A LTR ERVL 18 415 -27 1 1126 276 296 24 24 chr12 70915885 70915968 -50341562 - B1_Mur4 SINE Alu -66 84 2 1 1126 243 0 0 0 chr12 70916317 70916344 -50341186 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1126 23 78 0 0 chr12 70916410 70916461 -50341069 + AT_rich Low_complexity Low_complexity 1 51 0 1 1126 755 193 193 0 chr12 70916461 70916642 -50340888 - B3 SINE B2 0 216 1 1 1126 531 206 143 0 chr12 70917497 70917623 -50339907 - B1_Mur1 SINE Alu -5 144 1 1 1126 799 161 0 97 chr12 70919566 70919718 -50337812 + B1_Mur2 SINE Alu 1 139 -10 1 1126 200 59 29 0 chr12 70919718 70919752 -50337778 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1126 799 161 0 97 chr12 70919752 70919764 -50337766 + B1_Mur2 SINE Alu 140 149 0 1 1126 28 29 0 0 chr12 70921464 70921499 -50336031 + AT_rich Low_complexity Low_complexity 1 35 0 1 1126 1033 160 55 36 chr12 70921547 70921723 -50335807 + URR1B DNA MER1_type 1 183 -42 1 1126 2171 132 61 56 chr12 70921723 70922115 -50335415 + ORR1B1 LTR MaLR 1 394 0 1 1126 1033 160 55 36 chr12 70922115 70922158 -50335372 + URR1B DNA MER1_type 184 224 -1 1 1126 1046 78 42 7 chr12 70922189 70922331 -50335199 - B1_Mus2 SINE Alu 0 147 1 1 1126 1540 167 230 3 chr12 70922514 70922827 -50334703 + ORR1C2 LTR MaLR 1 384 0 1 1126 180 77 0 0 chr12 70922976 70923002 -50334528 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1126 1009 257 29 14 chr12 70923019 70923295 -50334235 - B4 SINE B4 -12 280 1 1 1126 260 225 113 0 chr12 70923342 70923413 -50334117 - MIRc SINE MIR -17 251 173 1 1126 270 192 12 71 chr12 70923939 70924023 -50333507 + ID4 SINE ID 5 83 0 1 1126 1445 79 16 21 chr12 70924205 70924398 -50333132 + B2_Mm2 SINE B2 1 192 -3 1 1126 255 312 42 0 chr12 70924756 70924852 -50332678 + L1MD3 LINE L1 6696 6795 -1200 1 1126 337 300 39 39 chr12 70926420 70926524 -50331006 - B1F SINE Alu -45 104 1 1 1126 1012 172 60 15 chr12 70926898 70926931 -50330599 - B3 SINE B2 -1 215 183 1 1126 333 0 0 0 chr12 70926931 70926968 -50330562 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1126 1012 172 60 15 chr12 70926968 70927135 -50330395 - B3 SINE B2 -34 182 7 1 1126 23 0 0 0 chr12 70927917 70927940 -50329590 + AT_rich Low_complexity Low_complexity 1 23 0 1 1126 22 35 0 0 chr12 70928948 70928977 -50328553 + AT_rich Low_complexity Low_complexity 1 29 0 1 1126 331 179 69 59 chr12 70929887 70929988 -50327542 + PB1D9 SINE Alu 19 120 0 1 1126 487 297 118 0 chr12 70930288 70930500 -50327030 - MER58B DNA MER1_type 0 341 105 1 1126 641 254 11 89 chr12 70930586 70930776 -50326754 - B3A SINE B2 -36 180 6 1 1126 184 314 0 19 chr12 70930860 70930912 -50326618 + MER5A DNA MER1_type 118 168 -21 1 1126 343 258 11 11 chr12 70931127 70931221 -50326309 + B1_Mur1 SINE Alu 54 147 -2 1 1126 204 143 0 0 chr12 70931225 70931267 -50326263 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1126 297 266 32 11 chr12 70932037 70932132 -50325398 + B1F1 SINE Alu 6 102 -47 1 1126 1950 39 0 0 chr12 70933165 70933395 -50324135 - L1_Mus1 LINE L1 0 6567 6338 1 1126 423 273 40 40 chr12 70933627 70933776 -50323754 - B1F1 SINE Alu 0 149 1 1 1126 272 188 14 14 chr12 70933903 70933973 -50323557 - B3 SINE B2 -3 213 144 1 1126 612 0 0 0 chr12 70934957 70935025 -50322505 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 1 1126 355 310 105 12 chr12 70935162 70935410 -50322120 + LTR65 LTR ERV1 14 284 -385 1 1126 244 255 27 54 chr12 70936241 70936353 -50321177 + L1ME3 LINE L1 5906 6014 -150 1 1126 246 254 33 33 chr12 70936440 70936562 -50320968 + L1ME3 LINE L1 6041 6162 0 1 1126 918 245 19 14 chr12 70937291 70937506 -50320024 + B3 SINE B2 1 216 0 1 1126 842 174 0 20 chr12 70938184 70938331 -50319199 - B1_Mur4 SINE Alu -1 149 6 1 1126 21 36 0 0 chr12 70938782 70938810 -50318720 + AT_rich Low_complexity Low_complexity 1 28 0 1 1126 731 205 19 31 chr12 70939841 70940002 -50317528 + B3 SINE B2 28 186 -30 1 1126 551 221 106 8 chr12 70940955 70941128 -50316402 + B3 SINE B2 2 191 -4 1 1126 180 0 0 0 chr12 70941437 70941457 -50316073 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 1126 360 303 77 62 chr12 70941583 70941713 -50315817 - RSINE1 SINE B4 -6 159 28 1 1126 441 236 73 8 chr12 70942688 70942812 -50314718 + B1F SINE Alu 5 136 -13 1 1126 456 301 55 70 chr12 70943566 70943766 -50313764 + MER58A DNA MER1_type 28 224 0 1 1126 231 61 0 0 chr12 70944497 70944530 -50313000 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1 1126 1376 80 11 0 chr12 70945552 70945728 -50311802 - B2_Mm2 SINE B2 -14 181 4 1 1126 521 289 91 10 chr12 70946291 70946490 -50311040 - B4A SINE B4 -10 282 68 1 1126 340 221 11 11 chr12 70947632 70947719 -50309811 + PB1D10 SINE Alu 24 110 -7 1 1126 432 0 0 0 chr12 70947746 70947794 -50309736 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1126 305 275 12 0 chr12 70948019 70948099 -50309431 - ID4_ SINE ID -1 82 2 1 1126 482 221 192 5 chr12 70949320 70949507 -50308023 - ID_B1 SINE B4 -1 223 2 1 1126 404 160 71 54 chr12 70949513 70949527 -50308003 - B1_Mur1 SINE Alu -1 148 139 1 1126 207 0 0 0 chr12 70949527 70949550 -50307980 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1126 404 160 71 54 chr12 70949550 70949647 -50307883 - B1_Mur1 SINE Alu -11 138 35 1 1126 260 208 2 18 chr12 70949679 70949744 -50307786 - B3 SINE B2 -130 65 1 1 1126 22 35 0 0 chr12 70949782 70949811 -50307719 + AT_rich Low_complexity Low_complexity 1 29 0 1 1126 822 155 238 0 chr12 70950266 70950459 -50307071 + RMER1A Other Other 780 1018 -12 1 1126 2088 90 54 6 chr12 70951015 70951329 -50306201 + ORR1A4 LTR MaLR 1 329 0 1 1126 25 31 0 0 chr12 70951546 70951578 -50305952 + AT_rich Low_complexity Low_complexity 1 32 0 1 1126 1278 14 0 0 chr12 70951631 70951777 -50305753 + B1_Mm SINE Alu 2 147 0 1 1126 352 256 15 37 chr12 70952063 70952197 -50305333 - L1MEc LINE L1 -6235 165 35 1 1126 21 0 0 0 chr12 70952396 70952417 -50305113 + AT_rich Low_complexity Low_complexity 1 21 0 1 1126 484 303 51 42 chr12 70952591 70952808 -50304722 + MER2 DNA MER2_type 119 337 -8 1 1126 337 127 13 101 chr12 70954716 70954795 -50302735 - B1_Mur1 SINE Alu -25 124 53 1 1126 849 187 0 13 chr12 70954909 70955061 -50302469 - B1_Mur4 SINE Alu 0 150 1 1 1126 38 68 0 0 chr12 70955199 70955272 -50302258 + AT_rich Low_complexity Low_complexity 1 73 0 1 1126 21 71 0 0 chr12 70955279 70955321 -50302209 + AT_rich Low_complexity Low_complexity 1 42 0 1 1126 233 140 0 20 chr12 70955366 70955408 -50302122 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1126 279 0 0 0 chr12 70955408 70955439 -50302091 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1126 233 140 0 20 chr12 70955439 70955447 -50302083 + (TA)n Simple_repeat Simple_repeat 2 9 0 1 1126 1427 81 0 5 chr12 70955478 70955664 -50301866 + B2_Mm2 SINE B2 2 186 -9 1 1126 627 248 15 22 chr12 70955689 70955825 -50301705 - ID_B1 SINE B4 0 224 90 1 1126 1031 44 81 0 chr12 70956632 70956768 -50300762 - B1_Mus1 SINE Alu 0 148 2 1 1126 2718 106 208 14 chr12 70957911 70958401 -50299129 + RMER4B LTR ERVK 1 585 0 1 1126 225 245 0 0 chr12 70958515 70958564 -50298966 - ID4_ SINE ID -27 56 8 1 1126 793 261 62 4 chr12 70958692 70958919 -50298611 - B4A SINE B4 -52 240 1 1 1126 252 0 0 0 chr12 70959165 70959193 -50298337 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1126 425 207 11 11 chr12 70959204 70959292 -50298238 - RSINE1 SINE B4 -32 133 46 1 1126 548 282 153 13 chr12 70961057 70961620 -50295910 + L1M3 LINE L1 4587 5274 -872 1 1126 387 41 0 0 chr12 70961620 70961669 -50295861 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1126 297 312 197 11 chr12 70961669 70961706 -50295824 + L1M3 LINE L1 5275 5311 -835 1 1126 459 274 119 89 chr12 70961735 70962071 -50295459 + L1M3 LINE L1 5396 5741 -430 1 1126 570 259 88 67 chr12 70962141 70962426 -50295104 + B4 SINE B4 2 292 0 1 1126 867 139 0 0 chr12 70962429 70962595 -50294935 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 1126 205 29 29 29 chr12 70962794 70962829 -50294701 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 1126 248 284 24 47 chr12 70962830 70962915 -50294615 - ID4_ SINE ID 0 83 1 1 1126 1743 161 19 72 chr12 70962973 70963093 -50294437 + ORR1B1 LTR MaLR 41 149 -245 1 1126 306 0 0 0 chr12 70963093 70963127 -50294403 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1126 1743 161 19 72 chr12 70963127 70963151 -50294379 + ORR1B1 LTR MaLR 150 159 -235 1 1126 183 42 0 0 chr12 70963151 70963175 -50294355 + (CATG)n Simple_repeat Simple_repeat 2 25 0 1 1126 1743 161 19 72 chr12 70963175 70963403 -50294127 + ORR1B1 LTR MaLR 160 394 0 1 1126 1178 184 128 31 chr12 70964019 70964339 -50293191 - MTD LTR MaLR -3 416 66 1 1126 503 301 101 50 chr12 70964605 70964843 -50292687 + B4A SINE B4 2 251 -41 1 1126 378 0 0 0 chr12 70964861 70964903 -50292627 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1126 324 253 0 52 chr12 70966778 70966874 -50290656 - B3A SINE B2 -84 114 24 1 1126 1130 62 7 0 chr12 70966896 70967041 -50290489 - B1_Mm SINE Alu 0 147 2 1 1126 193 329 0 14 chr12 70967850 70967924 -50289606 - L2 LINE L2 -770 2649 2577 1 1126 1936 177 45 8 chr12 70968059 70968457 -50289073 - MTD LTR MaLR -14 405 1 1 1126 718 222 133 42 chr12 70968459 70968699 -50288831 - ORR1D2 LTR MaLR -33 337 76 1 1126 1177 109 177 0 chr12 70968717 70968909 -50288621 + URR1A DNA MER1_type 1 226 0 1 1126 744 230 99 5 chr12 70969110 70969138 -50288392 - B3 SINE B2 -6 210 183 1 1126 253 83 62 0 chr12 70969138 70969186 -50288344 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1 1126 744 230 99 5 chr12 70969186 70969349 -50288181 - B3 SINE B2 -34 182 3 1 1126 376 277 13 36 chr12 70969574 70969736 -50287794 - B3 SINE B2 -2 196 47 1 1126 849 182 0 0 chr12 70969803 70969940 -50287590 - B1_Mus2 SINE Alu -4 143 7 1 1126 536 148 55 9 chr12 70970107 70970216 -50287314 + B1_Mus2 SINE Alu 33 146 -1 1 1126 21 57 0 0 chr12 70971293 70971328 -50286202 + AT_rich Low_complexity Low_complexity 1 35 0 1 1126 234 0 0 0 chr12 70971478 70971504 -50286026 + (CAA)n Simple_repeat Simple_repeat 3 28 0 1 1126 610 181 108 43 chr12 70971625 70971764 -50285766 + B1_Mur4 SINE Alu 3 150 0 1 1126 1330 149 168 0 chr12 70972078 70972346 -50285184 + RMER1B Other Other 751 1063 -3 1 1126 338 251 299 22 chr12 70972356 70972580 -50284950 + B4A SINE B4 5 290 -2 1 1126 341 75 0 19 chr12 70972587 70972641 -50284889 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1126 740 285 42 28 chr12 70972856 70973141 -50284389 - B4A SINE B4 0 292 4 1 1126 1130 98 78 39 chr12 70974201 70974381 -50283149 - B2_Mm2 SINE B2 -8 187 1 1 1126 801 136 2 37 chr12 70974757 70975245 -50282285 + (CA)n Simple_repeat Simple_repeat 1 470 0 1 1126 315 284 211 5 chr12 70975595 70975804 -50281726 + L1MA6 LINE L1 6043 6294 -6 1 1126 207 186 0 0 chr12 70976117 70976160 -50281370 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1126 24 32 0 0 chr12 70977710 70977741 -50279789 + AT_rich Low_complexity Low_complexity 1 31 0 1 1126 691 261 40 0 chr12 70978935 70979134 -50278396 - B3 SINE B2 0 216 10 1 1126 672 214 209 22 chr12 70979185 70979458 -50278072 + L1MC2 LINE L1 5579 5902 -442 1 1126 479 76 0 37 chr12 70980061 70980143 -50277387 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1126 244 236 42 29 chr12 70981788 70981931 -50275599 - L2b LINE L2 -1 3425 3245 1 1126 270 286 170 9 chr12 70982390 70982496 -50275034 - ID_B1 SINE B4 -75 149 27 1 1126 354 307 72 14 chr12 70982493 70982632 -50274898 - B1F2 SINE Alu 0 149 3 1 1126 590 208 158 96 chr12 70982880 70983246 -50274284 - Lx7 LINE L1 0 7696 7308 1 1126 249 239 207 18 chr12 70983269 70983380 -50274150 - Lx7 LINE L1 -457 7239 7108 1 1126 393 319 74 0 chr12 70983550 70983685 -50273845 - RSINE1 SINE B4 -17 148 4 1 1126 703 267 58 0 chr12 70983918 70984109 -50273421 + B3 SINE B2 1 202 -14 1 1126 257 354 52 0 chr12 70984132 70984228 -50273302 + PB1D10 SINE Alu 6 106 -11 1 1126 333 0 0 0 chr12 70984233 70984270 -50273260 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1126 719 282 66 12 chr12 70984427 70984761 -50272769 - MTD LTR MaLR -2 377 52 1 1126 911 127 29 35 chr12 70984775 70984946 -50272584 - URR1A DNA MER1_type 0 226 57 1 1126 300 308 29 0 chr12 70985295 70985399 -50272131 + PB1D10 SINE Alu 2 108 -9 1 1126 1241 41 0 0 chr12 70985740 70985887 -50271643 + B1_Mus1 SINE Alu 2 148 0 1 1126 330 26 0 0 chr12 70985887 70985926 -50271604 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1126 225 0 0 0 chr12 70986776 70986801 -50270729 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1126 1213 54 0 0 chr12 70986801 70986949 -50270581 - B1_Mus1 SINE Alu 0 148 1 1 1126 203 0 37 0 chr12 70986978 70987005 -50270525 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1126 524 215 0 36 chr12 70988379 70988490 -50269040 - RSINE1 SINE B4 -57 108 2 1 1126 181 258 135 31 chr12 70988539 70988635 -50268895 - L2a LINE L2 -9 3417 3312 1 1126 334 277 84 32 chr12 70991207 70991397 -50266133 - L2a LINE L2 -308 3118 2919 1 1126 354 45 0 0 chr12 70991686 70991730 -50265800 + (CAGG)n Simple_repeat Simple_repeat 4 47 0 1 1126 1033 81 0 7 chr12 70992506 70992643 -50264887 - B1_Mus2 SINE Alu -9 138 3 1 1126 263 230 11 54 chr12 70993101 70993193 -50264337 - RSINE1 SINE B4 -76 89 2 1 1126 688 190 79 97 chr12 70994979 70995195 -50262335 + B3 SINE B2 2 213 -3 1 1126 222 171 25 125 chr12 70995803 70995883 -50261647 - L4 LINE RTE -5 2024 1953 1 1126 360 43 0 0 chr12 70995945 70995991 -50261539 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1126 257 333 19 9 chr12 70996029 70996135 -50261395 - L4 LINE RTE -271 1758 1652 1 1126 208 196 22 0 chr12 70996241 70996287 -50261243 - L4 LINE RTE -718 1311 1265 1 1126 189 0 0 0 chr12 70996690 70996711 -50260819 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1126 1150 58 0 0 chr12 70996760 70996898 -50260632 + B1_Mus1 SINE Alu 2 139 -9 1 1126 22 0 0 0 chr12 70996904 70996926 -50260604 + AT_rich Low_complexity Low_complexity 1 22 0 1 1126 296 240 81 93 chr12 70996969 70997130 -50260400 - RSINE1 SINE B4 -3 162 4 1 1126 242 186 0 0 chr12 70997382 70997425 -50260105 + B1_Mus1 SINE Alu 11 53 -95 1 1126 861 217 90 53 chr12 70997762 70998094 -50259436 - ORR1D1 LTR MaLR -18 376 1 1 1126 281 290 35 87 chr12 70998920 70999186 -50258344 + ERVL-B4-int LTR ERVL 1510 1820 -3665 1 1126 552 270 46 0 chr12 70999649 70999801 -50257729 + B3 SINE B2 1 159 -57 1 1126 1136 76 0 14 chr12 70999833 70999980 -50257550 + B1_Mm SINE Alu 1 145 -2 1 1126 237 269 266 11 chr12 71000026 71000120 -50257410 - MLT1A1 LTR MaLR 0 365 248 1 1126 445 204 58 10 chr12 71000236 71000340 -50257190 - MLT1A1 LTR MaLR -295 113 5 1 1126 21 0 0 0 chr12 71000374 71000395 -50257135 + AT_rich Low_complexity Low_complexity 1 21 0 2 1126 924 285 21 43 chr12 71000408 71000642 -50256888 + B4A SINE B4 8 232 -60 3 1126 3121 44 0 5 chr12 71000642 71001009 -50256521 - RLTR10B2 LTR ERVK 0 365 1 4 1126 924 285 21 43 chr12 71001009 71001056 -50256474 + B4A SINE B4 233 283 -9 3 1126 535 335 82 28 chr12 71001657 71002163 -50255367 + ERVL-E-int LTR ERVL 3053 3613 -2148 5 1126 289 301 130 0 chr12 71002362 71002508 -50255022 + ERVL-E-int LTR ERVL 3734 3898 -1816 5 1126 486 373 98 29 chr12 71002547 71002967 -50254563 + ERVL-E-int LTR ERVL 3892 4340 -1327 5 1126 2102 86 7 3 chr12 71002968 71003273 -50254257 - ORR1A2 LTR MaLR 0 327 22 6 1126 779 301 60 62 chr12 71003352 71003753 -50253777 + ERVL-E-int LTR ERVL 4656 5132 -625 5 1126 423 0 0 0 chr12 71003918 71003965 -50253565 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1126 3472 30 2 0 chr12 71004037 71004432 -50253098 - MTA_Mm LTR MaLR 0 396 1 8 1126 1139 282 103 31 chr12 71004722 71004844 -50252686 - L1MB8 LINE L1 -317 5861 5741 9 1126 1936 162 21 45 chr12 71004844 71005220 -50252310 - ORR1B2 LTR MaLR 0 367 1 1 1126 1139 282 103 31 chr12 71005220 71005638 -50251892 - L1MB8 LINE L1 -438 5740 5282 9 1126 24 0 0 0 chr12 71005845 71005869 -50251661 + AT_rich Low_complexity Low_complexity 1 24 0 1 1126 346 250 198 0 chr12 71005989 71006085 -50251445 + B1F1 SINE Alu 26 140 -9 1 1126 220 382 20 0 chr12 71006123 71006225 -50251305 + PB1D10 SINE Alu 12 115 -2 1 1126 615 285 25 35 chr12 71006292 71006492 -50251038 + L1MC4 LINE L1 6804 7001 -1041 1 1126 772 303 22 11 chr12 71006503 71006780 -50250750 + B4A SINE B4 5 284 -8 1 1126 752 258 151 44 chr12 71006866 71006901 -50250629 - ORR1E LTR MaLR -3 356 320 1 1126 1964 161 110 8 chr12 71006901 71007283 -50250247 + MTC LTR MaLR 1 421 0 1 1126 752 258 151 44 chr12 71007283 71007564 -50249966 - ORR1E LTR MaLR -40 319 6 1 1126 528 16 0 0 chr12 71007590 71007651 -50249879 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1126 182 37 37 0 chr12 71007656 71007683 -50249847 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1126 285 29 0 0 chr12 71008102 71008136 -50249394 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1126 327 25 0 0 chr12 71008249 71008289 -50249241 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1126 1880 32 0 0 chr12 71012609 71012830 -50244700 + L1Md_A LINE L1 6362 6582 0 2 1126 747 271 35 20 chr12 71013747 71014021 -50243509 - ORR1E LTR MaLR 0 379 16 2 1126 231 282 0 0 chr12 71014213 71014323 -50243207 + (CA)n Simple_repeat Simple_repeat 1 110 0 2 1126 370 277 75 30 chr12 71014866 71015000 -50242530 - B1F1 SINE Alu -1 148 9 2 1126 414 0 0 0 chr12 71015138 71015184 -50242346 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1126 1791 178 16 6 chr12 71015196 71015507 -50242023 - Lx9 LINE L1 -163 7481 7168 2 1126 537 254 126 36 chr12 71015958 71016236 -50241294 - L1MB4 LINE L1 0 6180 5878 2 1126 464 184 0 0 chr12 71016272 71016348 -50241182 - B3 SINE B2 -138 78 3 2 1126 858 281 76 18 chr12 71016431 71016706 -50240824 - B4 SINE B4 0 292 2 3 1126 3139 14 0 0 chr12 71016746 71017092 -50240438 + ORR1A0 LTR MaLR 1 346 0 3 1126 1334 65 5 71 chr12 71017160 71017358 -50240172 - B2_Mm2 SINE B2 -9 186 2 3 1126 786 127 0 0 chr12 71017779 71017905 -50239625 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 3 1126 2043 285 94 10 chr12 71018361 71019307 -50238223 - Lx8 LINE L1 -28 7445 6386 3 1126 334 292 35 0 chr12 71019763 71019876 -50237654 - PB1D7 SINE Alu 0 120 4 3 1126 456 298 0 0 chr12 71019904 71020008 -50237522 - B1F1 SINE Alu -45 104 1 3 1126 259 310 18 110 chr12 71020008 71020085 -50237445 - MT2B2 LTR ERVL -429 155 94 3 1126 280 325 102 0 chr12 71020085 71020242 -50237288 - L1M5 LINE L1 -1456 4690 4518 3 1126 686 302 142 22 chr12 71020550 71021135 -50236395 - L1ME1 LINE L1 -1644 6141 5476 3 1126 657 110 0 0 chr12 71021135 71021235 -50236295 + (TC)n Simple_repeat Simple_repeat 2 101 0 4 1126 207 0 0 0 chr12 71021235 71021258 -50236272 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1126 537 92 0 0 chr12 71022552 71022628 -50234902 + (TTCC)n Simple_repeat Simple_repeat 2 77 0 4 1126 5450 165 104 26 chr12 71022725 71022879 -50234651 - RMER12B LTR ERVK -12 1392 1204 4 1126 948 129 0 0 chr12 71022879 71023049 -50234481 + (CA)n Simple_repeat Simple_repeat 1 170 0 4 1126 5450 165 104 26 chr12 71023049 71024152 -50233378 - RMER12B LTR ERVK -201 1203 38 4 1126 1414 192 188 3 chr12 71024173 71024513 -50233017 - Lx9 LINE L1 -63 7581 7179 4 1126 566 79 11 0 chr12 71024546 71024635 -50232895 + RMER12B LTR ERVK 627 716 -688 4 1126 1044 203 36 89 chr12 71024647 71024928 -50232602 - Lx9 LINE L1 -468 7176 6911 4 1126 1021 142 68 0 chr12 71024925 71025101 -50232429 + Lx9 LINE L1 6751 6938 -706 4 1126 419 174 109 0 chr12 71025107 71025199 -50232331 - B3 SINE B2 0 216 115 4 1126 306 288 0 0 chr12 71025202 71025282 -50232248 - PB1D10 SINE Alu -21 96 17 4 1126 232 266 106 30 chr12 71025773 71025905 -50231625 - MusHAL1 LINE L1 -2324 388 247 4 1126 857 214 5 54 chr12 71025959 71026127 -50231403 + B3A SINE B2 5 171 -27 5 1126 210 37 0 0 chr12 71026127 71026154 -50231376 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1126 857 214 5 54 chr12 71026154 71026188 -50231342 + B3A SINE B2 172 197 -1 5 1126 231 36 0 0 chr12 71026191 71026219 -50231311 + (TATG)n Simple_repeat Simple_repeat 1 28 0 5 1126 849 265 32 5 chr12 71026283 71026503 -50231027 + B4A SINE B4 15 240 -52 5 1126 362 321 117 11 chr12 71027590 71027873 -50229657 - L1ME2z LINE L1 -153 6291 5979 5 1126 215 291 55 64 chr12 71028052 71028098 -50229432 + B1F1 SINE Alu 33 76 -73 5 1126 546 190 124 0 chr12 71028098 71028219 -50229311 + B1_Mur3 SINE Alu 2 137 -12 5 1126 287 25 0 24 chr12 71028220 71028261 -50229269 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 5 1126 215 291 55 64 chr12 71028261 71028322 -50229208 + B1F1 SINE Alu 77 141 -8 5 1126 2337 80 62 0 chr12 71028750 71029087 -50228443 - L1_Mus3 LINE L1 -12 6626 6269 5 1126 288 0 0 0 chr12 71029087 71029119 -50228411 + (TTTTTA)n Simple_repeat Simple_repeat 5 36 0 5 1126 1041 57 0 0 chr12 71029119 71029259 -50228271 - B1_Mus2 SINE Alu 0 147 8 6 1126 498 182 39 110 chr12 71029124 71029278 -50228252 - B4 SINE B4 -71 221 79 6 1126 1315 62 0 0 chr12 71029278 71029439 -50228091 - L1_Mus3 LINE L1 -371 6267 6107 6 1126 1641 32 0 0 chr12 71029582 71029768 -50227762 - B2_Mm1a SINE B2 -7 186 1 6 1126 813 305 54 4 chr12 71030121 71030397 -50227133 + Lx8 LINE L1 6924 7213 -260 6 1126 541 273 98 1 chr12 71030606 71030794 -50226736 + Lx8 LINE L1 6953 7179 -465 6 1126 598 271 43 32 chr12 71031505 71031692 -50225838 + B3A SINE B2 5 193 -5 6 1126 261 0 0 0 chr12 71031748 71031777 -50225753 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1126 23 33 0 0 chr12 71031787 71031817 -50225713 + AT_rich Low_complexity Low_complexity 1 30 0 6 1126 1650 55 8 29 chr12 71031890 71032134 -50225396 + 7SK RNA RNA 1 239 -92 6 1126 1318 91 0 46 chr12 71032239 71032409 -50225121 + B2_Mm2 SINE B2 3 168 -27 7 1126 182 37 37 0 chr12 71032409 71032436 -50225094 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 7 1126 1318 91 0 46 chr12 71032436 71032460 -50225070 + B2_Mm2 SINE B2 169 188 -7 7 1126 21 36 0 0 chr12 71032668 71032696 -50224834 + AT_rich Low_complexity Low_complexity 1 28 0 7 1126 524 48 23 57 chr12 71032866 71032954 -50224576 + L1Md_F3 LINE L1 6499 6583 -1 7 1126 875 263 9 57 chr12 71033651 71033801 -50223729 + ID_B1 SINE B4 4 148 -76 7 1126 1101 73 0 0 chr12 71033801 71033937 -50223593 + B1_Mus2 SINE Alu 3 138 -9 7 1126 230 51 0 49 chr12 71033937 71033978 -50223552 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1126 875 263 9 57 chr12 71033978 71034056 -50223474 + ID_B1 SINE B4 149 221 -3 7 1126 320 322 30 79 chr12 71034056 71034221 -50223309 + RSINE1 SINE B4 9 165 0 7 1126 684 239 39 48 chr12 71034865 71035072 -50222458 + B3 SINE B2 1 205 -11 7 1126 1088 58 0 7 chr12 71036173 71036312 -50221218 + B1_Mus2 SINE Alu 2 139 -8 7 1126 369 0 0 0 chr12 71036312 71036353 -50221177 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 1126 216 349 40 27 chr12 71036468 71036618 -50220912 - MIR3 SINE MIR -21 187 36 8 1126 186 71 0 0 chr12 71037473 71037501 -50220029 + (CAA)n Simple_repeat Simple_repeat 1 28 0 8 1126 267 31 0 0 chr12 71037539 71037571 -50219959 + (GAA)n Simple_repeat Simple_repeat 2 33 0 8 1126 225 291 0 0 chr12 71038004 71038059 -50219471 + C-rich Low_complexity Low_complexity 2 56 0 8 1126 415 215 0 151 chr12 71038236 71038430 -50219100 + B1_Mur1 SINE Alu 5 149 0 8 1126 468 0 0 0 chr12 71039825 71039877 -50217653 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1126 180 0 0 0 chr12 71039892 71039912 -50217618 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 8 1126 468 347 6 23 chr12 71040084 71040261 -50217269 + B4 SINE B4 116 289 -3 8 1126 701 200 144 43 chr12 71040376 71040564 -50216966 + B3 SINE B2 1 207 -9 8 140 899 256 30 0 chr12 71040870 71041073 -50216457 + B3 SINE B2 1 209 -7 9 1127 652 207 6 76 chr12 71044022 71044179 -50213351 + B1_Mur1 SINE Alu 2 147 -2 9 1127 666 0 0 0 chr12 71044185 71044259 -50213271 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 1127 2609 97 3 8 chr12 71044612 71044985 -50212545 - Lx3A LINE L1 -1 6980 6610 9 1127 1563 33 11 0 chr12 71045487 71045669 -50211861 - B2_Mm1a SINE B2 -8 185 2 9 1127 638 304 32 0 chr12 71046039 71046197 -50211333 + RSINE1 SINE B4 3 165 0 9 1127 3276 62 2 15 chr12 71046255 71046667 -50210863 - MTB_Mm LTR MaLR 0 407 1 9 1127 451 217 22 0 chr12 71046679 71046771 -50210759 + B1F SINE Alu 51 144 -5 9 1127 215 140 20 0 chr12 71046837 71046887 -50210643 + GA-rich Low_complexity Low_complexity 2 52 0 9 1127 1456 219 52 27 chr12 71047775 71048179 -50209351 + MTD LTR MaLR 6 419 0 9 1127 3362 110 221 11 chr12 71049522 71049754 -50207776 + RMER6A LTR ERVK 1 345 -411 1 1127 207 0 0 0 chr12 71049754 71049777 -50207753 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1127 3362 110 221 11 chr12 71049777 71050169 -50207361 + RMER6A LTR ERVK 346 756 0 1 1127 4836 216 79 54 chr12 71050641 71051867 -50205663 - Lx7 LINE L1 0 7696 6440 1 1127 1876 204 64 31 chr12 71051895 71052424 -50205106 - Lx7 LINE L1 -1532 6164 5646 1 1127 348 111 0 0 chr12 71053477 71053531 -50203999 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1127 337 320 49 0 chr12 71053935 71054057 -50203473 + ID_B1 SINE B4 88 215 -9 1 1127 272 352 102 0 chr12 71054085 71054173 -50203357 + PB1D9 SINE Alu 6 102 -18 1 1127 334 268 43 35 chr12 71054173 71054289 -50203241 - PB1 SINE Alu -10 117 1 1 1127 23 33 0 0 chr12 71056026 71056056 -50201474 + AT_rich Low_complexity Low_complexity 1 30 0 1 1127 1001 50 0 54 chr12 71056435 71056583 -50200947 - B1_Mm SINE Alu 0 147 8 1 1127 264 236 8 47 chr12 71056479 71056608 -50200922 - ORR1B1-int LTR MaLR -755 754 631 1 1127 1074 80 14 21 chr12 71057721 71057862 -50199668 - B1_Mus1 SINE Alu -8 140 1 1 1127 1300 73 78 11 chr12 71057902 71058082 -50199448 - B2_Mm2 SINE B2 -2 193 2 1 1127 717 262 82 50 chr12 71058489 71058770 -50198760 - B4A SINE B4 0 292 3 1 1127 583 200 63 8 chr12 71059108 71059234 -50198296 + B1_Mur2 SINE Alu 2 134 -15 1 1127 874 159 22 0 chr12 71059279 71059417 -50198113 + B1_Mur3 SINE Alu 3 143 -6 1 1127 334 360 43 22 chr12 71060845 71060984 -50196546 - MLT1M LTR MaLR -420 252 111 1 1127 1188 43 43 0 chr12 71061678 71061819 -50195711 + B1_Mus1 SINE Alu 2 148 0 1 1127 924 268 18 18 chr12 71062051 71062279 -50195251 - MTEb LTR MaLR -151 228 1 1 1127 871 187 164 0 chr12 71062563 71062734 -50194796 + B3 SINE B2 1 199 -17 1 1127 451 292 0 0 chr12 71062995 71063084 -50194446 + PB1D10 SINE Alu 9 97 -20 1 1127 968 215 24 33 chr12 71063566 71063778 -50193752 - B3 SINE B2 -6 210 1 1 1127 865 235 153 16 chr12 71063825 71064080 -50193450 + B4A SINE B4 1 290 -2 1 1127 1088 113 0 21 chr12 71065436 71065580 -50191950 - B1_Mur4 SINE Alu -9 141 1 1 1127 331 306 9 93 chr12 71067484 71067592 -50189938 - PB1 SINE Alu -21 99 1 1 1127 813 225 126 0 chr12 71067641 71067823 -50189707 - B3 SINE B2 -10 206 2 1 1127 606 244 241 12 chr12 71067862 71068028 -50189502 - B3 SINE B2 -10 206 3 1 1127 487 264 31 69 chr12 71068438 71068597 -50188933 + B3A SINE B2 40 192 -6 1 1127 246 164 49 0 chr12 71069830 71069891 -50187639 - PB1D9 SINE Alu -11 109 46 1 1127 1183 71 143 0 chr12 71071710 71071878 -50185652 + B2_Mm2 SINE B2 2 193 -2 1 1127 1992 185 55 11 chr12 71072531 71072892 -50184638 + ORR1C1 LTR MaLR 2 378 0 1 1127 214 172 34 17 chr12 71074238 71074250 -50183280 + A-rich Low_complexity Low_complexity 4 15 0 1 1127 1009 61 114 0 chr12 71074250 71074382 -50183148 + B1_Mm SINE Alu 1 147 0 1 1127 214 172 34 17 chr12 71074382 71074428 -50183102 + A-rich Low_complexity Low_complexity 16 63 0 1 1127 447 257 40 208 chr12 71075128 71075354 -50182176 - B3A SINE B2 -28 188 1 1 1127 507 214 0 47 chr12 71075480 71075612 -50181918 - B1_Mur2 SINE Alu 0 120 1 1 1127 323 252 55 123 chr12 71075612 71075687 -50181843 - MT2B LTR ERVL -449 152 89 1 1127 390 246 61 0 chr12 71076319 71076433 -50181097 - MER33 DNA MER1_type -198 126 6 1 1127 25 0 0 0 chr12 71077523 71077548 -50179982 + AT_rich Low_complexity Low_complexity 1 25 0 1 1127 392 291 83 47 chr12 71077800 71078053 -50179477 + Kanga11a DNA Tc2 626 887 -83 1 1127 716 232 14 0 chr12 71078248 71078386 -50179144 + B1F SINE Alu 1 140 -9 1 1127 195 42 0 0 chr12 71078390 71078414 -50179116 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 1 1127 485 275 143 80 chr12 71078486 71078737 -50178793 + MLT1F1 LTR MaLR 70 343 -226 1 1127 7867 74 19 7 chr12 71078842 71079940 -50177590 + L1_Mus3 LINE L1 5528 6638 0 1 1127 412 188 33 127 chr12 71080188 71080314 -50177216 - B1_Mur1 SINE Alu -34 115 2 1 1127 811 269 95 28 chr12 71080352 71080604 -50176926 - B4A SINE B4 -22 270 2 1 1127 515 287 0 24 chr12 71081027 71081145 -50176385 + B1F SINE Alu 26 141 -8 1 1127 180 111 0 0 chr12 71081145 71081172 -50176358 + (CATATA)n Simple_repeat Simple_repeat 6 32 0 1 1127 1254 156 47 0 chr12 71081337 71081548 -50175982 + URR1B DNA MER1_type 3 223 -2 1 1127 299 50 0 0 chr12 71081827 71081867 -50175663 + B3A SINE B2 1 40 -158 1 1127 468 234 132 8 chr12 71083903 71084032 -50173498 + B3A SINE B2 27 171 -27 1 1127 921 174 25 12 chr12 71084013 71084176 -50173354 - B3 SINE B2 -47 169 5 1 1127 22 0 0 0 chr12 71084581 71084603 -50172927 + AT_rich Low_complexity Low_complexity 1 22 0 1 1127 204 280 67 39 chr12 71086687 71086791 -50170739 + MIRb SINE MIR 71 177 -91 1 1127 372 21 0 21 chr12 71087180 71087228 -50170302 - HAL1-3A_ME LINE L1 -836 2022 1976 1 1127 306 0 0 0 chr12 71087228 71087262 -50170268 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1127 432 0 0 0 chr12 71087303 71087351 -50170179 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1127 266 219 16 32 chr12 71087769 71087892 -50169638 + (CCG)n Simple_repeat Simple_repeat 3 123 0 1 1127 21 36 0 0 chr12 71088114 71088142 -50169388 + GC_rich Low_complexity Low_complexity 1 28 0 1 1127 283 278 298 14 chr12 71088977 71089346 -50168184 - L2a LINE L2 -12 3414 2941 1 1127 246 322 195 8 chr12 71089375 71089596 -50167934 - L2a LINE L2 -575 2844 2577 1 1127 2690 73 50 3 chr12 71089596 71089955 -50167575 + L1_Mus3 LINE L1 6262 6637 -1 1 1127 246 322 195 8 chr12 71089955 71089974 -50167556 - L2a LINE L2 -843 2576 2559 1 1127 2024 121 18 15 chr12 71090683 71091010 -50166520 - RMER6A LTR ERVK -7 749 422 1 1127 1492 117 0 5 chr12 71091012 71091226 -50166304 - RMER6A LTR ERVK -543 213 1 1 1127 353 287 45 37 chr12 71091249 71091383 -50166147 + ID_B1 SINE B4 80 214 -10 1 1127 240 239 0 0 chr12 71091536 71091582 -50165948 + MER113 DNA MER1_type 128 173 -348 1 1127 564 188 21 0 chr12 71092250 71092346 -50165184 + B3 SINE B2 2 99 -117 1 1127 240 153 376 0 chr12 71092380 71092465 -50165065 + ORR1A4 LTR MaLR 205 321 -8 1 1127 210 314 29 0 chr12 71092629 71092699 -50164831 + CT-rich Low_complexity Low_complexity 3 74 0 1 1127 468 0 0 0 chr12 71093514 71093566 -50163964 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1127 1572 295 75 38 chr12 71093567 71094484 -50163046 + Lx7 LINE L1 4933 5914 -1782 1 1127 8649 75 39 21 chr12 71094516 71095776 -50161754 - Lx3_Mus LINE L1 0 7009 5727 1 1127 870 78 0 0 chr12 71095776 71095879 -50161651 - U6 snRNA snRNA 0 107 5 1 1127 469 273 33 8 chr12 71096177 71096299 -50161231 + RSINE1 SINE B4 2 126 -39 1 1127 1195 285 88 11 chr12 71096336 71096804 -50160726 + L1M2 LINE L1 4780 5283 -860 1 1127 260 260 105 72 chr12 71097292 71097453 -50160077 + RLTR41 LTR ERV1 251 532 -55 1 1127 1622 277 68 14 chr12 71097488 71098145 -50159385 + Lx7 LINE L1 5242 5965 -1679 1 1127 215 194 0 0 chr12 71098378 71098414 -50159116 + polypurine Low_complexity Low_complexity 3 38 0 1 1127 2097 142 39 36 chr12 71098487 71098845 -50158685 - ORR1B2 LTR MaLR -8 359 1 1 1127 362 279 29 0 chr12 71098847 71098951 -50158579 + Lx7 LINE L1 6328 6434 -1039 1 1127 22 56 0 0 chr12 71099491 71099527 -50158003 + AT_rich Low_complexity Low_complexity 1 36 0 1 1127 844 255 182 33 chr12 71100361 71100428 -50157102 + MLT1D LTR MaLR 7 81 -424 1 1127 2010 220 22 10 chr12 71100428 71100841 -50156689 + MTD LTR MaLR 2 419 0 1 1127 844 255 182 33 chr12 71100841 71101162 -50156368 + MLT1D LTR MaLR 82 453 -52 1 1127 523 305 118 10 chr12 71101198 71101575 -50155955 - L1MD3 LINE L1 -2142 5853 5431 1 1127 368 218 115 0 chr12 71101609 71101687 -50155843 - PB1D9 SINE Alu -8 112 26 1 1127 16588 175 47 63 chr12 71101849 71103878 -50153652 - L1_Mur3 LINE L1 -965 4915 2874 1 1127 553 170 75 0 chr12 71103878 71103972 -50153558 - B1_Mus2 SINE Alu -40 107 7 1 1127 16588 175 47 63 chr12 71103972 71106164 -50151366 - L1_Mur3 LINE L1 -965 2873 666 1 1127 1976 116 53 88 chr12 71106231 71106608 -50150922 + ORR1B1 LTR MaLR 31 394 0 1 1127 345 310 41 56 chr12 71106612 71106807 -50150723 - L1_Mur3 LINE L1 -7407 321 130 1 1127 751 208 138 44 chr12 71106826 71107007 -50150523 - B3A SINE B2 0 198 1 1 1127 230 129 34 45 chr12 71107104 71107193 -50150337 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1127 819 305 27 8 chr12 71107332 71107590 -50149940 - B4A SINE B4 -29 263 1 1 1127 369 270 73 98 chr12 71107590 71107795 -50149735 - L1MD LINE L1 -2856 3290 3091 1 1127 23 0 0 0 chr12 71107797 71107820 -50149710 + AT_rich Low_complexity Low_complexity 1 23 0 1 1127 693 234 96 17 chr12 71107860 71108038 -50149492 - B3A SINE B2 -6 192 1 1 1127 219 241 17 0 chr12 71108060 71108118 -50149412 + CT-rich Low_complexity Low_complexity 3 61 0 1 1127 519 285 72 89 chr12 71108126 71108273 -50149257 - L1M5 LINE L1 -3132 3014 2875 1 1127 789 194 126 26 chr12 71108273 71108464 -50149066 + B3 SINE B2 1 210 -6 1 1127 519 285 72 89 chr12 71108464 71108720 -50148810 - L1M5 LINE L1 -3272 2874 2618 1 1127 414 252 50 0 chr12 71108738 71108837 -50148693 + MLT1D LTR MaLR 4 107 -398 1 1127 1326 294 99 28 chr12 71108847 71109413 -50148117 - Charlie1a DNA MER1_type -828 627 22 1 1127 183 311 202 10 chr12 71109447 71109551 -50147979 - MIRc SINE MIR -39 229 106 1 1127 1195 91 0 0 chr12 71109837 71109980 -50147550 + B1_Mus1 SINE Alu 2 144 -4 1 1127 395 328 80 0 chr12 71110625 71110863 -50146667 - L1M2 LINE L1 -4224 2625 2369 1 1127 246 344 72 58 chr12 71111511 71111650 -50145880 + MIR SINE MIR 28 168 -94 1 1127 446 265 91 62 chr12 71112047 71112256 -50145274 - B3A SINE B2 -1 215 1 1 1127 25 0 0 0 chr12 71113904 71113929 -50143601 + AT_rich Low_complexity Low_complexity 1 25 0 1 1127 229 290 22 31 chr12 71117111 71117206 -50140324 + L2a LINE L2 3293 3393 -33 2 1127 483 278 0 38 chr12 71117670 71117801 -50139729 - RSINE1 SINE B4 -4 161 36 2 1127 630 122 0 0 chr12 71118408 71118506 -50139024 + (CA)n Simple_repeat Simple_repeat 1 98 0 2 1127 294 241 0 0 chr12 71120994 71121081 -50136449 + (CACAG)n Simple_repeat Simple_repeat 5 91 0 2 1127 279 130 0 0 chr12 71122947 71123001 -50134529 + (TAG)n Simple_repeat Simple_repeat 1 54 0 2 1127 250 314 69 11 chr12 71124382 71124469 -50133061 + PB1D10 SINE Alu 1 92 -25 2 1127 22 0 0 0 chr12 71125092 71125114 -50132416 + AT_rich Low_complexity Low_complexity 1 22 0 2 1127 1033 103 0 14 chr12 71125118 71125266 -50132264 + B1_Mus2 SINE Alu 2 147 0 2 1127 251 203 34 0 chr12 71125665 71125724 -50131806 - ID4 SINE ID -13 70 10 2 1127 1357 68 10 45 chr12 71125744 71125945 -50131585 + B2_Mm2 SINE B2 2 195 0 2 1127 504 282 83 22 chr12 71127318 71127499 -50130031 + B3A SINE B2 1 192 -6 2 1127 366 231 19 28 chr12 71128014 71128121 -50129409 + PB1 SINE Alu 11 116 -11 2 1127 27 0 0 0 chr12 71128135 71128162 -50129368 + AT_rich Low_complexity Low_complexity 1 27 0 2 1127 924 145 0 0 chr12 71130727 71130886 -50126644 + (TA)n Simple_repeat Simple_repeat 1 159 0 2 1127 180 0 0 0 chr12 71130886 71130905 -50126625 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 1127 288 0 0 0 chr12 71132424 71132456 -50125074 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2 1127 210 293 20 158 chr12 71133192 71133233 -50124297 + ID_B1 SINE B4 98 136 -88 2 1127 999 140 167 25 chr12 71133233 71133431 -50124099 + URR1A DNA MER1_type 1 226 0 2 1127 210 293 20 158 chr12 71133431 71133535 -50123995 + ID_B1 SINE B4 137 223 -1 2 1127 550 196 28 0 chr12 71133550 71133657 -50123873 + PB1D10 SINE Alu 8 117 0 2 1127 259 315 37 0 chr12 71133856 71133964 -50123566 - MER20 DNA MER1_type -44 175 64 2 1127 1255 34 0 0 chr12 71134997 71135143 -50122387 + B1_Mus2 SINE Alu 1 146 -1 2 1127 575 234 0 0 chr12 71135605 71135712 -50121818 - PB1D10 SINE Alu -6 111 5 2 1127 650 314 100 63 chr12 71136477 71136721 -50120809 - L1MC4a LINE L1 -606 7276 7010 2 1127 824 51 246 0 chr12 71136721 71136839 -50120691 - B1_Mus1 SINE Alu 0 148 2 2 1127 650 314 100 63 chr12 71136839 71137103 -50120427 - L1MC4a LINE L1 -873 7009 6749 2 1127 247 349 26 26 chr12 71137149 71137302 -50120228 - L1MC4a LINE L1 -1298 6584 6432 2 1127 661 338 90 42 chr12 71137543 71138322 -50119208 - L1MC4a LINE L1 -1747 6135 5320 2 1127 409 250 139 0 chr12 71138379 71138559 -50118971 - B3 SINE B2 -10 206 2 2 1127 461 303 82 56 chr12 71138917 71139148 -50118382 - MER2 DNA MER2_type -39 306 70 2 1127 685 131 110 8 chr12 71139343 71139498 -50118032 + B2_Mm2 SINE B2 1 182 -34 2 1127 1383 162 14 0 chr12 71139883 71140105 -50117425 - URR1B DNA MER1_type 0 225 1 2 1127 328 254 15 69 chr12 71143238 71143369 -50114161 + MER66-int LTR ERV1 4180 4303 -2373 2 1127 206 339 0 0 chr12 71146811 71146873 -50110657 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1127 270 0 0 0 chr12 71146924 71146954 -50110576 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1127 348 211 13 38 chr12 71146954 71147033 -50110497 - B4 SINE B4 -69 223 147 2 1127 344 254 148 0 chr12 71147253 71147375 -50110155 + B4 SINE B4 49 188 -104 2 1127 298 231 11 78 chr12 71147380 71147757 -50109773 + (CATA)n Simple_repeat Simple_repeat 1 351 0 2 1127 1409 75 11 0 chr12 71148545 71148733 -50108797 + B2_Mm1t SINE B2 4 193 0 2 1127 547 292 18 0 chr12 71150234 71150402 -50107128 + B3A SINE B2 27 197 -1 2 1127 372 257 105 0 chr12 71150422 71150593 -50106937 + L1MB8 LINE L1 5191 5379 -767 2 1127 756 224 148 31 chr12 71150714 71151004 -50106526 + L1MB8 LINE L1 5579 5902 -276 2 1127 232 314 14 0 chr12 71151049 71151119 -50106411 + G-rich Low_complexity Low_complexity 1 71 0 2 1127 920 147 206 0 chr12 71152445 71152615 -50104915 + B3 SINE B2 1 205 -11 2 1127 296 325 64 32 chr12 71152651 71152902 -50104628 + MER33 DNA MER1_type 2 260 -64 2 1127 1232 48 0 0 chr12 71153042 71153189 -50104341 + B1_Mus1 SINE Alu 1 147 -1 2 1127 904 157 11 11 chr12 71153189 71153369 -50104161 + GA-rich Low_complexity Low_complexity 1 180 0 2 1127 186 43 0 0 chr12 71153533 71153556 -50103974 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 2 1127 602 97 57 0 chr12 71154074 71154198 -50103332 + Lx4A LINE L1 6928 7058 0 2 1127 518 191 114 0 chr12 71154512 71154617 -50102913 + URR1B DNA MER1_type 1 117 -108 2 1127 443 246 9 18 chr12 71157507 71157619 -50099911 - PB1D10 SINE Alu -6 111 1 2 1127 1180 243 90 55 chr12 71158223 71158515 -50099015 + MTE2b LTR MaLR 1 312 -67 2 1127 1368 191 162 27 chr12 71158515 71158657 -50098873 + ORR1D1 LTR MaLR 1 172 -202 2 1127 180 0 0 0 chr12 71158657 71158677 -50098853 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 1127 291 85 0 0 chr12 71158677 71158723 -50098807 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1127 1368 191 162 27 chr12 71158723 71158907 -50098623 + ORR1D1 LTR MaLR 173 371 -3 2 1127 1180 243 90 55 chr12 71158907 71158980 -50098550 + MTE2b LTR MaLR 313 379 0 2 1127 282 225 79 0 chr12 71159377 71159466 -50098064 - MER5A1 DNA MER1_type -30 136 41 2 1127 1161 108 0 0 chr12 71161805 71161981 -50095549 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 2 1127 522 0 0 0 chr12 71161981 71162038 -50095492 + (CAGG)n Simple_repeat Simple_repeat 4 61 0 2 1127 626 249 163 16 chr12 71162426 71162610 -50094920 - B3 SINE B2 -4 212 2 2 1127 1369 206 148 16 chr12 71164196 71164379 -50093151 + Lx9 LINE L1 7204 7418 -226 2 1127 378 0 0 0 chr12 71164379 71164421 -50093109 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1127 1369 206 148 16 chr12 71164421 71164621 -50092909 + Lx9 LINE L1 7419 7637 -7 2 1127 243 312 54 18 chr12 71165230 71165341 -50092189 + B1F SINE Alu 4 118 -31 2 1127 240 35 0 0 chr12 71165455 71165484 -50092046 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1127 231 36 0 0 chr12 71165484 71165511 -50092019 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1127 1243 280 17 23 chr12 71165813 71166157 -50091373 - MTE2b LTR MaLR -37 342 1 2 1127 2627 87 143 139 chr12 71166867 71167377 -50090153 - RLTR1B LTR ERV1 0 512 1 2 1127 414 262 120 7 chr12 71167628 71167770 -50089760 + MIR SINE MIR 1 158 -104 2 1127 367 229 154 111 chr12 71167975 71168137 -50089393 - B3A SINE B2 -14 184 16 2 1127 308 340 138 13 chr12 71168508 71168660 -50088870 + L1M5 LINE L1 5656 5826 -298 2 1127 414 333 45 90 chr12 71169127 71169371 -50088159 + Lx8 LINE L1 7053 7285 -188 2 1127 211 312 70 11 chr12 71170508 71170621 -50086909 + MIRm SINE MIR 8 138 -138 2 1128 783 200 29 18 chr12 71172516 71172701 -50084829 - B3 SINE B2 -3 192 1 2 1128 490 219 115 8 chr12 71174309 71174468 -50083062 - B3 SINE B2 -15 180 5 2 1128 198 0 0 0 chr12 71174784 71174806 -50082724 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1128 1184 59 153 6 chr12 71175406 71175576 -50081954 + B2_Mm2 SINE B2 1 195 0 2 1128 273 57 0 0 chr12 71175577 71175612 -50081918 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1128 693 0 0 0 chr12 71175607 71175684 -50081846 + (GAAAA)n Simple_repeat Simple_repeat 3 79 0 2 1128 252 167 0 0 chr12 71177274 71177322 -50080208 + GA-rich Low_complexity Low_complexity 1 48 0 2 1128 480 175 0 0 chr12 71177519 71177616 -50079914 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1128 761 212 92 31 chr12 71178066 71178261 -50079269 + B3 SINE B2 4 210 -6 2 1128 202 170 0 41 chr12 71178377 71178426 -50079104 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1128 389 298 43 51 chr12 71178596 71178734 -50078796 - B4A SINE B4 -141 151 15 2 1128 32 26 0 0 chr12 71178744 71178783 -50078747 + AT_rich Low_complexity Low_complexity 1 39 0 2 1128 410 328 38 8 chr12 71179553 71179685 -50077845 + ID_B1 SINE B4 82 217 -7 2 1128 279 93 0 0 chr12 71181602 71181645 -50075885 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1128 405 286 11 0 chr12 71182371 71182462 -50075068 + B4A SINE B4 2 93 -199 2 1128 246 32 0 0 chr12 71182496 71182527 -50075003 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 2 1128 1169 44 0 0 chr12 71182848 71182984 -50074546 + B1_Mus2 SINE Alu 1 136 -11 2 1128 829 93 16 0 chr12 71182990 71183119 -50074411 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 2 1128 219 69 0 0 chr12 71184489 71184518 -50073012 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 2 1128 180 125 98 24 chr12 71184737 71184778 -50072752 + L2c LINE L2 3111 3154 -233 2 1128 28 29 0 0 chr12 71184845 71184880 -50072650 + AT_rich Low_complexity Low_complexity 1 35 0 2 1128 962 105 52 0 chr12 71184880 71185042 -50072488 - B2_Mm2 SINE B2 -37 179 1 2 1128 198 0 0 0 chr12 71185148 71185170 -50072360 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1128 387 0 0 0 chr12 71185909 71185952 -50071578 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1128 423 0 0 0 chr12 71186131 71186178 -50071352 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1128 282 245 0 0 chr12 71186183 71186236 -50071294 - PB1D10 SINE Alu -9 108 56 2 1128 306 0 0 0 chr12 71186237 71186271 -50071259 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1128 562 317 83 83 chr12 71187679 71188212 -50069318 + MT2A LTR ERVL 1 533 0 2 1128 697 196 52 72 chr12 71188547 71188740 -50068790 + B2_Mm2 SINE B2 1 189 -6 2 1128 3083 55 39 3 chr12 71189950 71190336 -50067194 + MTB LTR MaLR 1 400 0 2 1128 430 186 0 0 chr12 71191395 71191465 -50066065 - ID4_ SINE ID -12 71 2 2 1128 335 286 56 28 chr12 71192443 71192551 -50064979 + B1F1 SINE Alu 1 111 -38 2 1128 242 299 0 0 chr12 71192583 71192650 -50064880 + ID4 SINE ID 2 68 -15 2 1128 622 152 90 83 chr12 71192694 71192838 -50064692 + B1_Mur3 SINE Alu 1 145 -4 2 1128 784 268 0 48 chr12 71192922 71193130 -50064400 - B3A SINE B2 0 198 1 3 1128 621 0 0 0 chr12 71193195 71193264 -50064266 + (TATATG)n Simple_repeat Simple_repeat 1 69 0 3 1128 1112 90 0 0 chr12 71193489 71193634 -50063896 + B1_Mus2 SINE Alu 2 146 -1 3 1128 299 321 19 0 chr12 71194001 71194107 -50063423 - L2a LINE L2 -5 3421 3314 3 1128 208 225 0 0 chr12 71194120 71194160 -50063370 - MIRb SINE MIR -32 236 197 3 1128 190 283 50 0 chr12 71194213 71194273 -50063257 + MIR SINE MIR 200 262 0 3 1128 591 279 10 73 chr12 71194687 71194886 -50062644 + ID_B1 SINE B4 82 273 -19 3 1128 757 244 70 10 chr12 71195204 71195403 -50062127 - B3 SINE B2 -1 215 5 3 1128 23 0 0 0 chr12 71195714 71195737 -50061793 + AT_rich Low_complexity Low_complexity 1 23 0 3 1128 500 0 17 0 chr12 71197320 71197380 -50060150 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1128 581 223 88 84 chr12 71197861 71198111 -50059419 - RLTR11B LTR ERVK -32 421 171 3 1128 275 276 147 13 chr12 71198186 71198315 -50059215 - MIRb SINE MIR -99 177 23 3 1128 996 128 14 0 chr12 71199451 71199592 -50057938 - B1_Mus2 SINE Alu -4 143 1 3 1128 850 133 119 17 chr12 71199930 71200106 -50057424 + B2_Mm2 SINE B2 1 194 -1 3 1128 231 308 91 15 chr12 71200902 71200968 -50056562 - ID4_ SINE ID -10 73 3 3 1128 798 61 7 0 chr12 71201007 71201121 -50056409 + B1_Mm SINE Alu 1 120 0 3 1128 690 170 51 15 chr12 71201139 71201276 -50056254 + B1F2 SINE Alu 6 147 -2 3 1128 371 261 46 85 chr12 71201306 71201393 -50056137 + RSINE1 SINE B4 41 128 -37 3 1128 276 53 0 0 chr12 71201393 71201431 -50056099 + (TCTCTG)n Simple_repeat Simple_repeat 2 39 0 3 1128 371 261 46 85 chr12 71201431 71201473 -50056057 + RSINE1 SINE B4 129 165 0 3 1128 279 276 103 0 chr12 71201497 71201670 -50055860 + L1MA4 LINE L1 6091 6297 -3 3 1128 1245 34 0 0 chr12 71203245 71203392 -50054138 + B1_Mus2 SINE Alu 1 147 0 3 1128 1218 43 0 0 chr12 71204781 71204922 -50052608 + B1_Mus2 SINE Alu 2 142 -5 3 1128 440 77 0 15 chr12 71204928 71204994 -50052536 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 3 1128 325 198 210 0 chr12 71204995 71205076 -50052454 + B1_Mur3 SINE Alu 42 139 -10 3 1128 189 0 0 0 chr12 71205079 71205100 -50052430 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1128 351 164 0 76 chr12 71205353 71205432 -50052098 + ID4_ SINE ID 2 74 -9 3 1128 923 131 27 33 chr12 71205624 71205761 -50051769 + B1_Mur2 SINE Alu 1 137 -12 3 1128 414 0 0 0 chr12 71205761 71205807 -50051723 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1128 923 131 27 33 chr12 71205807 71205819 -50051711 + B1_Mur2 SINE Alu 138 149 0 3 1128 183 80 0 0 chr12 71206159 71206184 -50051346 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1128 1285 165 9 22 chr12 71206442 71206671 -50050859 + URR1A DNA MER1_type 1 226 0 3 1128 184 143 22 77 chr12 71206879 71206970 -50050560 + G-rich Low_complexity Low_complexity 5 90 0 3 1128 372 322 48 79 chr12 71207960 71208149 -50049381 - MIRb SINE MIR -23 245 63 3 1128 180 171 0 47 chr12 71211141 71211184 -50046346 + L2 LINE L2 2776 2816 -603 3 1128 236 258 132 83 chr12 71214162 71214306 -50043224 + L1MD1 LINE L1 6094 6359 0 3 1128 198 0 0 0 chr12 71214902 71214924 -50042606 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1128 440 154 39 0 chr12 71214927 71215005 -50042525 - B1_Mus1 SINE Alu -63 85 5 3 1128 322 284 25 0 chr12 71214941 71215022 -50042508 - B4 SINE B4 -140 152 70 3 1128 297 232 20 131 chr12 71215022 71215038 -50042492 - MT2B LTR ERVL -375 224 139 3 1128 618 222 69 31 chr12 71215241 71215427 -50042103 - B3 SINE B2 -3 190 2 3 1128 234 0 0 0 chr12 71215641 71215667 -50041863 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1128 759 203 41 14 chr12 71215667 71215803 -50041727 - B1_Mur2 SINE Alu -7 142 1 3 1128 412 288 64 91 chr12 71215803 71215856 -50041674 - B4 SINE B4 -209 83 36 3 1128 818 104 36 43 chr12 71215954 71216094 -50041436 + B1_Mur4 SINE Alu 5 143 -7 3 1128 512 133 7 15 chr12 71216097 71216235 -50041295 + GA-rich Low_complexity Low_complexity 1 136 0 3 1128 198 0 0 0 chr12 71216255 71216277 -50041253 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 1128 714 287 75 4 chr12 71217242 71217494 -50040036 - MER33 DNA MER1_type 0 324 55 3 1128 210 71 0 0 chr12 71218591 71218619 -50038911 + (CGTG)n Simple_repeat Simple_repeat 1 28 0 3 1128 348 323 90 30 chr12 71218635 71218801 -50038729 + LTR33 LTR ERVL 1 176 -339 3 1128 596 250 166 4 chr12 71219124 71219365 -50038165 - B4A SINE B4 -11 281 2 3 1128 254 290 50 134 chr12 71219479 71219658 -50037872 - LTR16A1 LTR ERVL -2 454 291 3 1128 360 200 0 0 chr12 71221330 71221400 -50036130 + CT-rich Low_complexity Low_complexity 1 70 0 3 1128 618 250 58 0 chr12 71221930 71222050 -50035480 + RSINE1 SINE B4 17 143 -22 3 1128 23 33 0 0 chr12 71222063 71222093 -50035437 + AT_rich Low_complexity Low_complexity 1 30 0 3 1128 581 335 56 22 chr12 71222097 71222329 -50035201 + B4 SINE B4 35 274 -18 3 1128 915 36 0 0 chr12 71223109 71223220 -50034310 + (GAA)n Simple_repeat Simple_repeat 2 112 0 3 1128 195 299 107 0 chr12 71223450 71223588 -50033942 + MIRb SINE MIR 41 204 -64 3 1128 197 224 0 17 chr12 71224098 71224157 -50033373 + CT-rich Low_complexity Low_complexity 1 58 0 3 1128 276 287 104 24 chr12 71224165 71224290 -50033240 - ID_B1 SINE B4 0 224 90 3 1128 386 307 0 0 chr12 71224324 71224438 -50033092 + PB1D10 SINE Alu 3 116 -1 3 1128 380 317 94 48 chr12 71224570 71224901 -50032629 + MLT1L LTR MaLR 173 518 -92 3 1128 249 278 88 44 chr12 71225042 71225155 -50032375 + MLT1I LTR MaLR 93 210 -201 3 1128 331 344 62 40 chr12 71225699 71225923 -50031607 + RMER15 LTR ERVL 347 575 0 3 1128 230 328 86 0 chr12 71226301 71226417 -50031113 - MIR SINE MIR -26 236 111 3 1128 297 0 0 0 chr12 71227421 71227454 -50030076 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1128 830 200 7 0 chr12 71227458 71227603 -50029927 - B1_Mus1 SINE Alu -1 147 2 3 1128 450 307 32 58 chr12 71227609 71227799 -50029731 - MER21B LTR ERV1 -191 672 488 3 1128 448 271 124 29 chr12 71227880 71228089 -50029441 - MER21B LTR ERV1 -607 256 28 3 1128 343 244 12 0 chr12 71228151 71228233 -50029297 + MTE2b LTR MaLR 6 88 -291 3 1128 254 50 25 0 chr12 71228234 71228274 -50029256 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 3 1128 2354 43 3 0 chr12 71228300 71228582 -50028948 - L1Md_T LINE L1 0 6582 6300 3 1128 591 252 126 17 chr12 71228583 71228834 -50028696 + MTE2b LTR MaLR 77 363 -16 3 1128 2514 295 118 95 chr12 71228851 71230168 -50027362 + MTE2b-int LTR MaLR 2 1575 -5 3 1128 685 295 86 95 chr12 71230175 71230534 -50026996 + MTE2b LTR MaLR 22 377 -2 3 1128 1244 41 0 7 chr12 71231149 71231293 -50026237 + B1_Mus1 SINE Alu 1 144 -4 3 1128 183 42 0 0 chr12 71231293 71231317 -50026213 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 1128 22 0 0 0 chr12 71231417 71231439 -50026091 + AT_rich Low_complexity Low_complexity 1 22 0 3 1128 399 113 0 0 chr12 71232944 71233006 -50024524 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1128 493 277 53 8 chr12 71233010 71233141 -50024389 - RSINE1 SINE B4 -28 137 1 3 1128 303 253 81 0 chr12 71233142 71233229 -50024301 - PB1D10 SINE Alu 0 117 24 3 1128 416 280 57 10 chr12 71233240 71233381 -50024149 + ORR1E LTR MaLR 1 149 -221 3 1128 1489 115 43 12 chr12 71233381 71233636 -50023894 + Lx LINE L1 6389 6651 -3 3 1128 291 286 82 116 chr12 71233636 71233727 -50023803 + ORR1E LTR MaLR 150 225 -145 3 1128 2823 55 3 0 chr12 71234020 71234365 -50023165 + ORR1A1 LTR MaLR 1 346 0 3 1128 487 293 8 0 chr12 71234581 71234704 -50022826 + ID_B1 SINE B4 93 216 -8 3 1128 219 88 0 0 chr12 71234728 71234762 -50022768 + (CATG)n Simple_repeat Simple_repeat 2 35 0 3 1128 306 73 0 0 chr12 71234765 71234806 -50022724 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1128 205 138 0 0 chr12 71234807 71234836 -50022694 + (CCA)n Simple_repeat Simple_repeat 3 31 0 3 1128 306 0 0 0 chr12 71234836 71234870 -50022660 + (CAA)n Simple_repeat Simple_repeat 1 34 0 3 1128 2128 322 63 116 chr12 71234875 71235151 -50022379 + MTE-int LTR MaLR 219 491 -1089 3 1128 1159 75 0 7 chr12 71235151 71235298 -50022232 + B1_Mm SINE Alu 1 146 -1 3 1128 2128 322 63 116 chr12 71235298 71236405 -50021125 + MTE-int LTR MaLR 492 1527 -53 3 1128 457 296 204 23 chr12 71236405 71236709 -50020821 + ORR1E LTR MaLR 1 359 0 3 1128 190 338 12 38 chr12 71237645 71237725 -50019805 - L2b LINE L2 -20 3355 3278 3 1128 574 151 14 0 chr12 71237889 71238028 -50019502 + (TATATG)n Simple_repeat Simple_repeat 3 143 0 3 1128 416 296 130 31 chr12 71238031 71238254 -50019276 + MER2 DNA MER2_type 101 345 0 3 1128 239 243 54 0 chr12 71238339 71238413 -50019117 + MIR SINE MIR 33 110 -152 3 1128 1197 61 7 0 chr12 71239470 71239617 -50017913 - B1_Mus1 SINE Alu 0 148 1 3 1128 856 156 0 0 chr12 71239672 71239800 -50017730 + B1_Mus2 SINE Alu 2 129 -18 3 1128 492 18 0 0 chr12 71239807 71239864 -50017666 + (CTAAA)n Simple_repeat Simple_repeat 3 59 0 3 1128 407 309 23 83 chr12 71239903 71240168 -50017362 + MLT1A LTR MaLR 1 249 -125 3 1128 282 160 0 0 chr12 71240207 71240257 -50017273 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1128 315 71 0 0 chr12 71240294 71240336 -50017194 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1128 423 228 32 11 chr12 71240416 71240509 -50017021 + B1F2 SINE Alu 33 127 -22 3 1128 336 257 230 0 chr12 71240570 71240683 -50016847 - B1_Mur1 SINE Alu -10 139 1 3 1128 949 82 89 0 chr12 71240739 71240866 -50016664 + B1_Mus2 SINE Alu 1 139 -8 3 1128 189 74 0 0 chr12 71240866 71240893 -50016637 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1128 445 301 107 24 chr12 71241519 71241771 -50015759 + B4A SINE B4 1 273 -19 3 1128 1142 49 28 0 chr12 71241801 71241943 -50015587 - B1_Mm SINE Alu 0 147 2 4 1128 396 0 0 0 chr12 71242076 71242120 -50015410 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1128 375 215 64 27 chr12 71242138 71242248 -50015282 - B3A SINE B2 -80 118 5 4 1128 478 308 93 19 chr12 71242534 71242845 -50014685 + Arthur1B DNA Tip100 846 1179 -46 4 1128 374 214 75 32 chr12 71242879 71242995 -50014535 - B1_Mur3 SINE Alu -33 116 1 4 1128 287 274 30 40 chr12 71242917 71243016 -50014514 - MT2B LTR ERVL -361 240 143 4 1128 188 135 0 26 chr12 71243030 71243068 -50014462 + CT-rich Low_complexity Low_complexity 3 39 0 4 1128 375 147 88 0 chr12 71243074 71243142 -50014388 - PB1D10 SINE Alu -20 97 24 4 1128 206 32 0 31 chr12 71243153 71243185 -50014345 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4 1128 248 122 0 0 chr12 71243197 71243238 -50014292 - B2_Mm2 SINE B2 -154 41 1 4 1128 702 298 58 41 chr12 71243258 71243671 -50013859 - Charlie4a DNA MER1_type -64 444 25 4 1128 1300 81 16 41 chr12 71244637 71244831 -50012699 + B2_Mm2 SINE B2 3 191 -4 4 1128 276 30 0 0 chr12 71245161 71245194 -50012336 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1128 198 0 0 0 chr12 71245981 71246003 -50011527 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1128 479 218 156 50 chr12 71246631 71246810 -50010720 + B3A SINE B2 1 198 0 4 1128 699 214 14 28 chr12 71246827 71246971 -50010559 + B1_Mur1 SINE Alu 3 144 -5 4 1128 435 149 0 0 chr12 71248262 71248336 -50009194 + (GGA)n Simple_repeat Simple_repeat 2 75 0 4 1128 705 24 0 0 chr12 71248867 71248950 -50008580 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 1128 204 213 16 32 chr12 71249649 71249712 -50007818 + A-rich Low_complexity Low_complexity 4 65 0 4 1128 754 165 16 0 chr12 71250639 71250766 -50006764 + B3 SINE B2 2 130 -86 4 1128 622 248 12 124 chr12 71251825 71252095 -50005435 - MTEa LTR MaLR 0 370 139 4 1128 245 216 40 13 chr12 71252414 71252489 -50005041 + ID4_ SINE ID 1 77 -6 4 1128 1298 54 0 56 chr12 71252833 71253030 -50004500 - B2_Mm2 SINE B2 -8 187 2 4 1128 280 250 13 38 chr12 71253118 71253197 -50004333 + PB1D10 SINE Alu 5 81 -36 4 1128 207 69 0 0 chr12 71253215 71253244 -50004286 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 4 1128 274 308 41 24 chr12 71253769 71253892 -50003638 + B1F1 SINE Alu 15 139 -10 4 1128 240 59 0 0 chr12 71254181 71254215 -50003315 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 4 1128 319 183 27 53 chr12 71254565 71254640 -50002890 - B3 SINE B2 -7 209 137 4 1128 195 39 0 0 chr12 71255841 71255856 -50001674 + (TTTG)n Simple_repeat Simple_repeat 1 15 0 4 1128 1262 41 0 0 chr12 71255856 71256003 -50001527 - B1_Mus2 SINE Alu 0 147 1 4 1128 195 39 0 0 chr12 71256003 71256013 -50001517 + (TTTG)n Simple_repeat Simple_repeat 3 12 0 4 1128 216 0 0 0 chr12 71256280 71256304 -50001226 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 4 1128 1443 188 99 35 chr12 71256857 71257231 -50000299 - MTD LTR MaLR 0 419 22 4 1128 569 158 208 0 chr12 71260128 71260248 -49997282 - B1_Mur4 SINE Alu -5 145 1 4 1128 420 267 0 0 chr12 71260613 71260793 -49996737 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1128 631 206 0 12 chr12 71260831 71260998 -49996532 + (TATATG)n Simple_repeat Simple_repeat 6 170 0 4 1128 439 276 64 54 chr12 71261028 71261231 -49996299 - B4A SINE B4 -86 206 2 4 1128 1301 62 0 17 chr12 71261245 71261426 -49996104 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 1128 22 0 0 0 chr12 71261428 71261450 -49996080 + AT_rich Low_complexity Low_complexity 1 22 0 4 1128 1085 89 6 72 chr12 71261452 71261475 -49996055 - B2_Mm1a SINE B2 -24 169 153 4 1128 480 35 0 0 chr12 71261475 71261533 -49995997 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 4 1128 1085 89 6 72 chr12 71261533 71261690 -49995840 - B2_Mm1a SINE B2 -41 152 1 4 1128 232 219 16 0 chr12 71261727 71261760 -49995770 + polypurine Low_complexity Low_complexity 2 35 0 4 1128 276 30 0 0 chr12 71261760 71261793 -49995737 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1128 232 219 16 0 chr12 71261793 71261823 -49995707 + polypurine Low_complexity Low_complexity 36 65 0 4 1128 405 0 0 0 chr12 71261842 71261887 -49995643 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1128 1133 196 27 0 chr12 71262131 71262350 -49995180 + URR1B DNA MER1_type 1 225 0 4 1128 205 173 58 0 chr12 71262671 71262723 -49994807 + (CAGAGA)n Simple_repeat Simple_repeat 2 56 0 4 1128 1185 105 0 0 chr12 71263099 71263271 -49994259 - B2_Mm2 SINE B2 -22 173 2 4 1128 892 231 55 10 chr12 71263618 71263819 -49993711 - MTD LTR MaLR -208 211 2 4 1128 6528 29 1 3 chr12 71266516 71267271 -49990259 + L1Md_F2 LINE L1 5825 6578 -4 4 1128 28 0 0 0 chr12 71267271 71267299 -49990231 + AT_rich Low_complexity Low_complexity 1 28 0 4 1128 223 115 113 16 chr12 71267445 71267507 -49990023 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 4 1128 877 43 0 0 chr12 71267551 71267666 -49989864 - B1_Mus2 SINE Alu 0 147 33 4 1128 334 233 65 32 chr12 71267672 71267765 -49989765 + PB1D9 SINE Alu 16 111 -9 4 1128 180 0 0 0 chr12 71267775 71267795 -49989735 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 4 1128 396 0 0 0 chr12 71267995 71268039 -49989491 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1128 276 30 0 0 chr12 71268147 71268180 -49989350 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1128 213 267 0 0 chr12 71268204 71268249 -49989281 + polypyrimidine Low_complexity Low_complexity 4 48 0 4 1128 451 228 51 34 chr12 71268353 71268471 -49989059 - B1_Mur1 SINE Alu -2 146 26 4 1128 1198 90 44 28 chr12 71268649 71268831 -49988699 - B2_Mm2 SINE B2 -8 187 3 4 1128 206 309 82 10 chr12 71269143 71269241 -49988289 + MIRb SINE MIR 46 150 -118 4 1128 297 0 0 0 chr12 71269481 71269514 -49988016 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 4 1128 216 275 0 70 chr12 71269526 71269612 -49987918 - ID2 SINE ID -2 81 2 4 1128 190 241 18 53 chr12 71269726 71269783 -49987747 - MIRb SINE MIR -167 101 47 4 1128 275 289 13 0 chr12 71269835 71269911 -49987619 - ID4 SINE ID -5 78 2 4 1128 463 250 19 0 chr12 71270973 71271077 -49986453 + PB1D10 SINE Alu 5 110 -7 4 1128 459 35 0 0 chr12 71271501 71271558 -49985972 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 4 1128 210 37 0 0 chr12 71271558 71271585 -49985945 + (CAGT)n Simple_repeat Simple_repeat 3 29 0 4 1128 830 164 67 0 chr12 71271832 71271966 -49985564 - B1_Mur4 SINE Alu -6 144 2 4 1128 277 260 27 0 chr12 71271977 71272050 -49985480 - ID4 SINE ID 0 83 9 4 1128 494 332 66 8 chr12 71272054 71272312 -49985218 - L1MEg LINE L1 -5472 612 340 4 1128 265 218 11 22 chr12 71272410 71272499 -49985031 + (TATG)n Simple_repeat Simple_repeat 1 88 0 4 1128 934 284 17 34 chr12 71272565 71272860 -49984670 - B4A SINE B4 -2 290 1 4 1128 922 144 196 36 chr12 71272956 71273150 -49984380 - URR1B DNA MER1_type 0 225 1 4 1128 270 234 6 53 chr12 71273258 71273284 -49984246 + (CATATA)n Simple_repeat Simple_repeat 4 28 0 4 1128 180 0 0 0 chr12 71273284 71273304 -49984226 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 1128 270 234 6 53 chr12 71273304 71273448 -49984082 + (CATATA)n Simple_repeat Simple_repeat 5 141 0 4 1128 711 279 21 124 chr12 71273677 71273779 -49983751 + B4A SINE B4 22 103 -189 4 1128 335 273 27 0 chr12 71273779 71273889 -49983641 - PB1D9 SINE Alu -3 117 5 4 1128 789 262 28 2 chr12 71273889 71274068 -49983462 + B4 SINE B4 94 274 -18 4 1128 431 54 0 0 chr12 71274930 71274986 -49982544 + RMER17C LTR ERVK 1 56 -354 4 1128 1787 152 42 41 chr12 71274965 71275413 -49982117 + RMER17C LTR ERVK 16 439 -519 4 1128 378 317 16 16 chr12 71275423 71275548 -49981982 - B1F SINE Alu -1 148 24 4 1128 430 61 30 0 chr12 71276019 71276085 -49981445 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1128 784 165 63 0 chr12 71276090 71276217 -49981313 - B1_Mur3 SINE Alu -13 136 2 4 1128 245 237 113 0 chr12 71276243 71276340 -49981190 - L1MC LINE L1 -3109 3037 2930 4 1128 647 259 0 59 chr12 71276340 71276389 -49981141 + RSINE1 SINE B4 3 48 -117 4 1128 1064 212 161 45 chr12 71276389 71276668 -49980862 - ORR1D1 LTR MaLR 0 374 52 4 1128 189 0 0 0 chr12 71276668 71276689 -49980841 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1128 306 0 0 0 chr12 71276689 71276722 -49980808 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1128 1064 212 161 45 chr12 71276722 71276776 -49980754 - ORR1D1 LTR MaLR -323 51 2 4 1128 647 259 0 59 chr12 71276776 71276878 -49980652 + RSINE1 SINE B4 49 145 -20 4 1128 405 0 0 0 chr12 71276882 71276927 -49980603 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1128 278 260 65 58 chr12 71276972 71277127 -49980403 - L1M5 LINE L1 -3197 2949 2794 4 1128 1035 121 40 0 chr12 71277151 71277325 -49980205 - MTD LTR MaLR 0 419 239 4 1128 384 310 0 0 chr12 71277327 71277414 -49980116 - 7SLRNA srpRNA srpRNA -224 90 4 4 1128 449 303 52 46 chr12 71277532 71277726 -49979804 - Tigger5 DNA MER2_type -2164 242 48 4 1128 300 321 98 25 chr12 71277847 71278010 -49979520 + MIR SINE MIR 71 245 -17 4 1128 221 241 37 0 chr12 71278198 71278252 -49979278 + MIRm SINE MIR 41 96 -180 4 1128 288 172 65 0 chr12 71278350 71278443 -49979087 + A-rich Low_complexity Low_complexity 5 103 0 4 1128 365 356 17 0 chr12 71279196 71279311 -49978219 + RSINE1 SINE B4 11 127 -38 4 1128 405 70 0 0 chr12 71279324 71279381 -49978149 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1128 268 267 26 61 chr12 71279420 71279538 -49977992 + PB1D10 SINE Alu 6 123 -26 4 1128 1256 63 9 160 chr12 71280062 71280287 -49977243 + B2_Mm1a SINE B2 1 191 -2 4 1128 505 124 18 62 chr12 71280290 71280402 -49977128 + Lx9 LINE L1 7410 7516 -128 5 1128 609 198 0 79 chr12 71280385 71280588 -49976942 + Lx9 LINE L1 7458 7644 0 5 1128 918 159 7 0 chr12 71281175 71281320 -49976210 + B1_Mus1 SINE Alu 3 148 0 5 1128 210 71 0 0 chr12 71281938 71281966 -49975564 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1128 578 217 304 0 chr12 71282870 71283031 -49974499 - B3 SINE B2 -1 215 6 5 1128 348 333 68 3 chr12 71284477 71284620 -49972910 + MLT1A0 LTR MaLR 5 161 -204 5 1128 1892 151 6 9 chr12 71284620 71284941 -49972589 + RLTR46 LTR ERVK 1 320 0 5 1128 291 195 37 61 chr12 71284943 71285025 -49972505 + IAPEY3-int LTR ERVK 3 82 -7598 5 1128 435 238 116 0 chr12 71285057 71285204 -49972326 + IAPEY3-int LTR ERVK 574 737 -6943 5 1128 900 128 71 0 chr12 71285195 71285336 -49972194 + IAPEY3-int LTR ERVK 892 1042 -6638 5 1128 569 226 102 31 chr12 71285633 71285829 -49971701 + MMERVK10C-int LTR ERVK 292 501 -5636 5 1128 312 158 18 0 chr12 71285929 71285986 -49971544 + MMERVK10C-int LTR ERVK 1089 1146 -4260 5 1128 2410 98 86 0 chr12 71285988 71286336 -49971194 + MMERVK10C-int LTR ERVK 1885 2262 -5319 5 1128 884 72 410 0 chr12 71286328 71286472 -49971058 + MMERVK10C-int LTR ERVK 2727 2929 -4652 5 1128 6629 68 9 2 chr12 71286472 71287328 -49970202 + MMERVK10C-int LTR ERVK 3058 3919 -3662 5 1128 25373 91 16 22 chr12 71287313 71290804 -49966726 + MMERVK10C-int LTR ERVK 4112 7580 -1 5 1128 1953 144 3 9 chr12 71290811 71291133 -49966397 + RLTR46 LTR ERVK 1 320 0 5 1128 836 281 19 19 chr12 71291133 71291343 -49966187 + MLT1A0 LTR MaLR 156 365 0 5 1128 1856 128 26 22 chr12 71291451 71291762 -49965768 - Lx2 LINE L1 0 6997 6686 5 1128 417 286 0 11 chr12 71292367 71292459 -49965071 + PB1D10 SINE Alu 1 91 -26 5 1128 270 0 0 0 chr12 71292538 71292568 -49964962 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1128 278 259 116 48 chr12 71292655 71292801 -49964729 + B3A SINE B2 37 192 -6 5 1128 21 57 0 0 chr12 71293093 71293128 -49964402 + AT_rich Low_complexity Low_complexity 1 35 0 5 1128 767 101 28 14 chr12 71294388 71294529 -49963001 + (TTTTC)n Simple_repeat Simple_repeat 5 147 0 5 1128 1434 147 4 18 chr12 71295899 71296127 -49961403 - URR1B DNA MER1_type 0 225 1 5 1128 770 228 13 0 chr12 71299088 71299246 -49958284 + B3A SINE B2 1 160 -38 5 1128 288 0 0 0 chr12 71299274 71299306 -49958224 + (TAA)n Simple_repeat Simple_repeat 1 32 0 5 1128 5051 70 3 1 chr12 71299822 71300468 -49957062 + L1_Mus2 LINE L1 5920 6566 0 5 1128 893 222 164 0 chr12 71301614 71301839 -49955691 + B4 SINE B4 3 264 -28 5 1128 957 150 69 104 chr12 71302540 71302771 -49954759 + URR1A DNA MER1_type 2 224 -2 5 1129 270 0 0 0 chr12 71303185 71303215 -49954315 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1129 338 0 24 0 chr12 71303215 71303256 -49954274 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1129 579 226 88 0 chr12 71303263 71303400 -49954130 - B3A SINE B2 -41 157 9 5 1129 1391 80 37 0 chr12 71303630 71303818 -49953712 + B2_Mm2 SINE B2 1 195 0 5 1129 343 296 44 28 chr12 71304159 71304340 -49953190 + HAL1 LINE L1 1637 1820 -687 5 1129 3823 34 0 9 chr12 71304470 71304919 -49952611 + L1Md_T LINE L1 6137 6581 -1 5 1129 676 227 30 0 chr12 71306464 71306596 -49950934 + B1F2 SINE Alu 14 149 0 5 1129 256 291 11 141 chr12 71306745 71306822 -49950708 + RSINE1 SINE B4 86 154 -11 5 1129 243 88 0 0 chr12 71306822 71306856 -49950674 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 5 1129 256 291 11 141 chr12 71306856 71306870 -49950660 + RSINE1 SINE B4 155 165 0 5 1129 3875 146 97 7 chr12 71307633 71308318 -49949212 + RMER1B Other Other 5 1064 -2 5 1129 800 228 0 0 chr12 71308359 71308508 -49949022 + B1_Mur1 SINE Alu 1 149 0 5 1129 1212 29 0 0 chr12 71310435 71310572 -49946958 - B1_Mus2 SINE Alu -10 137 1 5 1129 368 103 52 0 chr12 71310927 71310985 -49946545 - B1_Mur4 SINE Alu -6 144 84 5 1129 965 85 0 7 chr12 71311618 71311760 -49945770 + (TCCC)n Simple_repeat Simple_repeat 3 143 0 5 1129 783 157 60 0 chr12 71311769 71311903 -49945627 - B1_Mur3 SINE Alu -6 143 2 5 1129 1269 41 0 0 chr12 71312254 71312401 -49945129 + B1_Mus2 SINE Alu 1 147 0 5 1129 252 0 0 0 chr12 71314234 71314262 -49943268 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1129 1116 126 0 17 chr12 71314352 71314530 -49943000 - B2_Mm2 SINE B2 -19 176 2 5 1129 262 239 15 15 chr12 71314610 71314678 -49942852 + CT-rich Low_complexity Low_complexity 1 68 0 5 1129 626 273 58 34 chr12 71314680 71314885 -49942645 - ID_B1 SINE B4 -14 210 1 5 1129 266 346 31 44 chr12 71315326 71315351 -49942179 - B2_Mm2 SINE B2 0 195 171 5 1129 270 0 0 0 chr12 71315351 71315381 -49942149 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5 1129 293 286 139 118 chr12 71315381 71315564 -49941966 - B3A SINE B2 -18 180 7 5 1129 3139 46 5 5 chr12 71315762 71316153 -49941377 - L1_Mus2 LINE L1 0 6566 6176 5 1129 437 40 53 0 chr12 71316646 71316722 -49940808 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1129 270 286 117 67 chr12 71317222 71317342 -49940188 - MIRb SINE MIR -69 199 74 5 1129 189 354 52 0 chr12 71317325 71317421 -49940109 - L2b LINE L2 -29 3346 3246 5 1129 300 205 80 57 chr12 71317792 71317880 -49939650 - L1ME4a LINE L1 -1 6123 6034 5 1129 1398 82 16 0 chr12 71317881 71318063 -49939467 + B2_Mm2 SINE B2 3 187 -8 5 1129 230 318 104 61 chr12 71318143 71318307 -49939223 + RLTR9B2 LTR ERVK 76 246 -174 5 1129 255 304 57 73 chr12 71318266 71318390 -49939140 + MLT1L LTR MaLR 158 279 -331 5 1129 450 0 0 0 chr12 71319301 71319351 -49938179 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1129 1150 238 116 0 chr12 71319786 71320089 -49937441 + MTE2b LTR MaLR 21 358 -21 5 1129 188 319 109 46 chr12 71320856 71320961 -49936569 + MIR SINE MIR 24 138 -124 5 1129 957 102 98 98 chr12 71320961 71321145 -49936385 + B2_Mm1t SINE B2 1 184 -9 5 1129 188 319 109 46 chr12 71321145 71321213 -49936317 + MIR SINE MIR 139 208 -54 5 1129 523 313 22 7 chr12 71321275 71321410 -49936120 + RSINE1 SINE B4 2 138 -27 5 1129 387 0 0 0 chr12 71321449 71321492 -49936038 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1129 180 270 120 33 chr12 71321866 71321958 -49935572 - MIRc SINE MIR -68 200 101 5 1129 1099 69 7 46 chr12 71323051 71323203 -49934327 - B1_Mus1 SINE Alu -1 147 2 5 1129 1337 93 27 0 chr12 71323213 71323396 -49934134 - B2_Mm1t SINE B2 -5 188 1 5 1129 512 228 0 0 chr12 71323520 71323612 -49933918 - B1_Mm SINE Alu -53 94 3 5 1129 417 242 58 39 chr12 71323612 71323623 -49933907 - B4 SINE B4 -107 185 81 5 1129 594 28 0 0 chr12 71323683 71323755 -49933775 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1129 351 0 0 0 chr12 71324187 71324226 -49933304 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1129 594 41 0 0 chr12 71324825 71324898 -49932632 + (CAG)n Simple_repeat Simple_repeat 2 74 0 5 1129 353 254 62 92 chr12 71325229 71325424 -49932106 - Kanga2_a DNA Tc2 -531 357 169 5 1129 275 244 82 25 chr12 71325651 71325773 -49931757 - Charlie7 DNA MER1_type -68 2544 2416 5 1129 230 0 0 32 chr12 71325774 71325805 -49931725 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1129 391 272 78 39 chr12 71329410 71329563 -49927967 - RSINE1 SINE B4 -4 161 3 5 1129 225 125 0 51 chr12 71329584 71329643 -49927887 + CT-rich Low_complexity Low_complexity 4 59 0 5 1129 724 59 0 0 chr12 71329952 71330037 -49927493 - L1_Mus2 LINE L1 -336 6230 6146 5 1129 2719 47 3 18 chr12 71330037 71330380 -49927150 + L1_Mus2 LINE L1 6229 6566 0 5 1129 945 249 91 45 chr12 71330501 71330787 -49926743 + MTEa LTR MaLR 1 299 -80 5 1129 520 259 42 0 chr12 71331079 71331222 -49926308 + B4 SINE B4 3 151 -141 5 1129 229 278 54 32 chr12 71331180 71331273 -49926257 + PB1D7 SINE Alu 24 118 -2 5 1129 258 32 0 0 chr12 71331273 71331304 -49926226 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1129 333 125 0 0 chr12 71331358 71331414 -49926116 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1129 321 109 0 0 chr12 71331723 71331778 -49925752 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 5 1129 234 0 0 0 chr12 71331785 71331811 -49925719 + (G)n Simple_repeat Simple_repeat 1 26 0 5 1129 551 259 87 64 chr12 71332167 71332431 -49925099 - LTR16B2 LTR ERVL 0 462 193 5 1129 218 326 81 0 chr12 71332689 71332775 -49924755 - PB1D7 SINE Alu 0 120 28 5 1129 203 352 45 28 chr12 71332797 71332914 -49924616 - MIR SINE MIR -61 207 85 5 1129 342 0 0 0 chr12 71333798 71333836 -49923694 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1129 3032 35 0 0 chr12 71334050 71334396 -49923134 + ORR1A0 LTR MaLR 1 346 0 5 1129 225 132 0 0 chr12 71334453 71334491 -49923039 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1129 273 189 38 0 chr12 71334901 71334954 -49922576 + ID4 SINE ID 3 57 -26 5 1129 264 296 29 24 chr12 71334950 71335058 -49922472 + ID4_ SINE ID 5 114 -38 5 1129 257 301 97 0 chr12 71336032 71336125 -49921405 + LTR88b LTR Gypsy? 100 201 -636 5 1129 329 223 78 0 chr12 71336847 71336944 -49920586 - PB1D7 SINE Alu -1 119 12 5 1129 213 65 0 0 chr12 71337105 71337136 -49920394 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1129 848 19 38 0 chr12 71337142 71337248 -49920282 - B1_Mus1 SINE Alu 0 148 39 5 1129 237 127 107 18 chr12 71337200 71337256 -49920274 - 4.5SRNA scRNA scRNA -8 86 26 5 1129 491 272 64 174 chr12 71337328 71337404 -49920126 + MTE2a LTR MaLR 3 54 -325 5 1129 1051 112 205 16 chr12 71337404 71337594 -49919936 + URR1A DNA MER1_type 1 226 0 5 1129 491 272 64 174 chr12 71337594 71337735 -49919795 + MTE2a LTR MaLR 55 196 -183 5 1129 497 247 148 34 chr12 71338225 71338401 -49919129 + MTE2a LTR MaLR 184 379 0 5 1129 184 289 0 0 chr12 71338954 71338992 -49918538 - L4 LINE RTE -521 1508 1471 5 1129 951 34 0 39 chr12 71339270 71339424 -49918106 + (TG)n Simple_repeat Simple_repeat 1 148 0 5 1129 401 196 268 25 chr12 71339466 71339668 -49917862 - B4A SINE B4 -41 251 1 5 1129 655 12 12 12 chr12 71339977 71340062 -49917468 + (TTCTC)n Simple_repeat Simple_repeat 5 89 0 5 1129 744 266 77 12 chr12 71340122 71340381 -49917149 - B4 SINE B4 -16 276 1 5 1129 380 260 26 88 chr12 71340420 71340438 -49917092 - PB1D10 SINE Alu -10 107 95 5 1129 495 0 0 0 chr12 71340438 71340493 -49917037 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1129 243 0 0 0 chr12 71340493 71340519 -49917011 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1129 380 260 26 88 chr12 71340519 71340613 -49916917 - PB1D10 SINE Alu -23 94 2 5 1129 1478 74 11 0 chr12 71341012 71341202 -49916328 + B2_Mm1t SINE B2 2 193 0 5 1129 850 190 14 0 chr12 71341271 71341413 -49916117 + B1_Mur4 SINE Alu 2 145 -5 6 1129 219 36 0 0 chr12 71341428 71341456 -49916074 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1129 246 80 60 0 chr12 71341675 71341725 -49915805 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1129 315 242 32 0 chr12 71341769 71341831 -49915699 - B1_Mur4 SINE Alu -86 64 1 6 1129 237 207 30 121 chr12 71341775 71341841 -49915689 - MT2B LTR ERVL -389 212 153 6 1129 635 270 0 20 chr12 71341967 71342118 -49915412 - RSINE1 SINE B4 -15 150 3 6 1129 336 307 73 0 chr12 71342483 71342620 -49914910 - RMER15 LTR ERVL -154 421 275 6 1129 183 330 109 10 chr12 71342788 71342889 -49914641 - MIRb SINE MIR -38 230 120 6 1129 1013 297 96 75 chr12 71343136 71343249 -49914281 + Tigger7 DNA MER2_type 14 123 -2368 6 1129 632 243 0 41 chr12 71343249 71343395 -49914135 + B1_Mur1 SINE Alu 3 142 -7 6 1129 1013 297 96 75 chr12 71343395 71343750 -49913780 + Tigger7 DNA MER2_type 124 492 -1999 6 1129 310 320 19 10 chr12 71343749 71343853 -49913677 - ID_B1 SINE B4 -119 105 1 6 1129 629 294 82 50 chr12 71344806 71345085 -49912445 - B4 SINE B4 -4 288 1 6 1129 256 252 139 20 chr12 71346578 71346679 -49910851 + L2a LINE L2 3301 3413 -13 6 1129 288 375 144 50 chr12 71348456 71348796 -49908734 + L2a LINE L2 3050 3421 -5 6 1129 474 228 0 128 chr12 71349596 71349737 -49907793 - PB1 SINE Alu -2 125 3 6 1129 262 245 50 91 chr12 71349777 71349898 -49907632 - MER106B DNA MER1_type -40 1019 904 6 1129 196 213 60 96 chr12 71350776 71350859 -49906671 - L4 LINE RTE -1133 896 817 6 1129 372 94 0 0 chr12 71351552 71351605 -49905925 + (GAA)n Simple_repeat Simple_repeat 3 55 0 6 1129 387 0 0 0 chr12 71355900 71355943 -49901587 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1129 366 244 0 53 chr12 71357132 71357227 -49900303 - HAL1-3A_ME LINE L1 -793 2065 1976 6 1129 301 274 0 12 chr12 71357227 71357312 -49900218 + (TG)n Simple_repeat Simple_repeat 2 85 0 6 1129 285 376 0 0 chr12 71357654 71357739 -49899791 - RSINE1 SINE B4 -79 86 2 6 1129 744 236 65 120 chr12 71359334 71359642 -49897888 - B4 SINE B4 0 292 2 6 1129 867 249 14 12 chr12 71360184 71360387 -49897143 - B3A SINE B2 -7 209 3 6 1129 1345 156 9 9 chr12 71362609 71362835 -49894695 + URR1A DNA MER1_type 1 226 0 6 1129 1218 303 107 20 chr12 71363239 71363697 -49893833 + MLT1D LTR MaLR 1 498 -7 6 1129 709 271 119 0 chr12 71363937 71364181 -49893349 - B4A SINE B4 -19 273 1 6 1129 203 95 0 45 chr12 71364274 71364318 -49893212 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 6 1129 27 73 0 0 chr12 71364686 71364741 -49892789 + AT_rich Low_complexity Low_complexity 1 55 0 6 1129 228 279 0 32 chr12 71365415 71365478 -49892052 + L1M5 LINE L1 5554 5614 -510 6 1129 309 234 212 18 chr12 71366108 71366221 -49891309 - RSINE1 SINE B4 -23 142 8 6 1129 321 26 0 0 chr12 71366575 71366613 -49890917 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 6 1129 413 152 0 25 chr12 71369267 71369348 -49888182 + RMER12B LTR ERVK 1 79 -1325 6 1129 25 0 0 0 chr12 71369518 71369543 -49887987 + AT_rich Low_complexity Low_complexity 1 25 0 6 1129 359 261 48 11 chr12 71369780 71369918 -49887612 - L1MEg LINE L1 -4132 1952 1804 6 1129 1174 74 0 0 chr12 71369918 71370066 -49887464 - B1_Mus1 SINE Alu 0 148 1 6 1129 353 262 91 32 chr12 71370066 71370102 -49887428 - L1MEg LINE L1 -4258 1826 1790 6 1129 270 0 0 0 chr12 71370226 71370256 -49887274 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1129 298 360 0 0 chr12 71370434 71370545 -49886985 + MIRb SINE MIR 98 208 -60 6 1129 492 238 30 37 chr12 71371059 71371194 -49886336 - MER5A1 DNA MER1_type 0 166 33 6 1129 258 164 0 62 chr12 71371635 71371657 -49885873 + A-rich Low_complexity Low_complexity 2 22 0 6 1129 216 0 0 0 chr12 71371657 71371681 -49885849 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1129 258 164 0 62 chr12 71371681 71371723 -49885807 + A-rich Low_complexity Low_complexity 23 62 0 6 1129 384 22 0 0 chr12 71372084 71372129 -49885401 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1129 1301 219 113 25 chr12 71372129 71372468 -49885062 + MT2A LTR ERVL 5 475 0 6 1129 795 75 0 0 chr12 71372684 71372791 -49884739 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 6 1129 608 97 11 0 chr12 71373550 71373643 -49883887 + (CA)n Simple_repeat Simple_repeat 2 95 0 6 1129 420 55 0 0 chr12 71373662 71373717 -49883813 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 6 1129 26 0 0 0 chr12 71374120 71374146 -49883384 + AT_rich Low_complexity Low_complexity 1 26 0 6 1129 1135 210 9 18 chr12 71374151 71374369 -49883161 - B3 SINE B2 0 216 1 6 1129 278 327 177 0 chr12 71376436 71376549 -49880981 - MIR SINE MIR -110 152 20 6 1129 882 116 314 0 chr12 71376802 71376974 -49880556 + URR1A DNA MER1_type 1 226 0 6 1129 207 0 0 0 chr12 71379207 71379230 -49878300 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1129 257 262 124 109 chr12 71379838 71379851 -49877679 - RLTR25A LTR ERVK -386 717 705 6 1129 692 268 25 35 chr12 71379851 71380048 -49877482 - B3A SINE B2 0 198 4 6 1129 257 262 124 109 chr12 71380048 71380227 -49877303 - RLTR25A LTR ERVK -399 704 522 6 1129 746 121 48 8 chr12 71380145 71380270 -49877260 - B1F2 SINE Alu -18 131 2 6 1129 304 302 34 25 chr12 71380376 71380495 -49877035 - PB1D9 SINE Alu 0 120 1 6 1129 355 244 24 0 chr12 71380496 71380578 -49876952 + L1MD2 LINE L1 6061 6144 -215 6 1129 270 269 64 70 chr12 71380581 71380737 -49876793 + L1MD2 LINE L1 6199 6323 -36 6 1129 411 256 88 2 chr12 71381105 71381211 -49876319 - B3A SINE B2 -47 148 27 6 1129 797 214 7 0 chr12 71381256 71381401 -49876129 - B1_Mur1 SINE Alu -2 147 2 6 1129 234 170 0 41 chr12 71383953 71383967 -49873563 + MT2B2 LTR ERVL 152 163 -421 6 1129 382 60 0 0 chr12 71383967 71384017 -49873513 + B1_Mus1 SINE Alu 1 50 -98 6 1129 599 273 88 29 chr12 71384056 71384260 -49873270 - B4A SINE B4 -75 217 2 6 1129 234 0 0 0 chr12 71385737 71385763 -49871767 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1129 1197 50 0 0 chr12 71385763 71385903 -49871627 - B1_Mus1 SINE Alu -7 141 2 6 1129 519 17 0 0 chr12 71387235 71387295 -49870235 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1129 203 339 90 52 chr12 71387886 71388020 -49869510 - MIRc SINE MIR -128 140 2 6 1129 378 0 0 0 chr12 71388141 71388183 -49869347 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1129 331 319 44 7 chr12 71389139 71389275 -49868255 + B1F SINE Alu 1 141 -8 6 1129 289 239 0 15 chr12 71389293 71389361 -49868169 + ID4_ SINE ID 6 72 -11 6 1129 216 0 0 0 chr12 71389363 71389387 -49868143 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1129 210 136 0 0 chr12 71390894 71390938 -49866592 + (CAAAC)n Simple_repeat Simple_repeat 1 44 0 6 1129 218 176 39 19 chr12 71392899 71392951 -49864579 + GA-rich Low_complexity Low_complexity 5 57 0 6 1129 2674 101 120 2 chr12 71393930 71394329 -49863201 + RLTR41 LTR ERV1 1 446 0 6 1129 873 248 130 4 chr12 71395945 71396192 -49861338 + B4A SINE B4 1 278 -14 6 1129 207 0 0 0 chr12 71396352 71396375 -49861155 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1129 232 239 0 43 chr12 71396689 71396759 -49860771 - L1MCb LINE L1 -5835 210 144 6 1129 2876 125 131 64 chr12 71397060 71397608 -49859922 + RMER4B LTR ERVK 1 585 0 6 1129 967 249 48 98 chr12 71397765 71397798 -49859732 - MTE2b LTR MaLR 0 379 344 6 1129 183 80 0 0 chr12 71397798 71397823 -49859707 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1129 967 249 48 98 chr12 71397823 71398004 -49859526 - MTE2b LTR MaLR -36 343 171 6 1129 333 0 0 0 chr12 71398004 71398041 -49859489 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1129 270 0 0 0 chr12 71398041 71398070 -49859460 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1129 513 257 33 33 chr12 71398074 71398227 -49859303 - RSINE1 SINE B4 -10 155 3 6 1129 967 249 48 98 chr12 71398227 71398402 -49859128 - MTE2b LTR MaLR -209 170 4 6 1129 436 227 21 0 chr12 71398428 71398525 -49859005 + MER67A LTR ERV1 1 99 -444 6 1129 282 274 61 31 chr12 71399196 71399294 -49858236 + MIRb SINE MIR 4 104 -164 6 1129 242 292 167 0 chr12 71399465 71399585 -49857945 + LTR16A LTR ERVL 243 382 -69 6 1129 293 279 25 0 chr12 71400489 71400568 -49856962 + B1F SINE Alu 68 148 -1 6 1129 306 299 0 0 chr12 71400583 71400650 -49856880 + ID2 SINE ID 15 81 -2 6 1129 713 99 0 8 chr12 71400650 71400734 -49856796 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1129 1031 100 0 11 chr12 71400734 71400916 -49856614 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 6 1129 713 99 0 8 chr12 71400916 71400953 -49856577 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1129 385 298 66 0 chr12 71400960 71401081 -49856449 + B1F2 SINE Alu 9 137 -12 6 1129 295 282 14 0 chr12 71401091 71401162 -49856368 + ID4 SINE ID 2 73 -10 6 1129 204 55 0 53 chr12 71401179 71401217 -49856313 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 6 1129 321 328 209 5 chr12 71402568 71402764 -49854766 - MIR SINE MIR -10 252 17 6 1129 726 227 36 56 chr12 71403104 71403300 -49854230 + B3A SINE B2 1 192 -6 6 1129 1168 266 73 6 chr12 71404203 71404543 -49852987 + MTEa LTR MaLR 11 373 -6 6 1129 240 163 0 0 chr12 71406775 71406818 -49850712 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1129 254 304 0 25 chr12 71406882 71406963 -49850567 + ID4 SINE ID 2 80 -3 6 1129 1986 194 69 12 chr12 71407155 71407635 -49849895 - RMER5 LTR ERV1 -8 526 20 6 1129 211 241 69 0 chr12 71407756 71407814 -49849716 + (CATG)n Simple_repeat Simple_repeat 1 62 0 6 1129 273 29 0 0 chr12 71407857 71407891 -49849639 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1129 447 264 39 158 chr12 71407904 71408188 -49849342 + MLT2F LTR ERVL 414 663 0 7 1129 565 217 64 40 chr12 71408209 71408382 -49849148 + Lx8 LINE L1 7268 7444 -29 7 1129 490 253 91 41 chr12 71408504 71408747 -49848783 + L1MB7 LINE L1 5427 5681 -503 7 1129 334 304 88 47 chr12 71408928 71409121 -49848409 + L1MB7 LINE L1 5978 6178 0 7 1129 469 253 41 6 chr12 71409512 71409683 -49847847 + (TG)n Simple_repeat Simple_repeat 2 178 0 7 1129 834 221 120 8 chr12 71409730 71409972 -49847558 - B4A SINE B4 -10 282 14 7 1129 832 261 121 29 chr12 71410023 71410402 -49847128 + L1MD2 LINE L1 5946 6359 0 7 1129 341 190 165 0 chr12 71410406 71410485 -49847045 + RSINE1 SINE B4 3 94 -71 7 1129 396 0 0 0 chr12 71410495 71410539 -49846991 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1129 432 168 0 29 chr12 71411604 71411708 -49845822 + (CATA)n Simple_repeat Simple_repeat 2 102 0 7 1129 1246 256 136 13 chr12 71411714 71412170 -49845360 + RMER5 LTR ERV1 13 524 -10 7 1129 218 328 0 0 chr12 71415575 71415639 -49841891 + (CATA)n Simple_repeat Simple_repeat 3 66 0 7 1129 881 228 29 0 chr12 71415642 71415813 -49841717 - B3A SINE B2 -22 176 1 7 1129 282 241 203 36 chr12 71415887 71416025 -49841505 + MLT1D LTR MaLR 301 461 -44 7 1129 21 36 0 0 chr12 71417799 71417827 -49839703 + AT_rich Low_complexity Low_complexity 1 28 0 7 1129 353 244 0 0 chr12 71419463 71419541 -49837989 + ID4_ SINE ID 3 80 -3 7 1129 218 32 32 0 chr12 71419562 71419593 -49837937 + (CAA)n Simple_repeat Simple_repeat 2 33 0 7 1129 2412 113 38 238 chr12 71419951 71420612 -49836918 + RLTR24 LTR ERV1 1 529 0 7 1129 265 200 83 28 chr12 71420817 71420889 -49836641 - PB1D10 SINE Alu -41 76 1 7 1129 264 268 188 11 chr12 71420894 71421075 -49836455 - L1M5 LINE L1 -384 5780 5568 7 1129 201 147 0 0 chr12 71421245 71421279 -49836251 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1129 324 323 30 40 chr12 71421373 71421573 -49835957 - L1M5 LINE L1 -1016 5130 4933 7 1129 2233 122 67 6 chr12 71421787 71422133 -49835397 + ORR1B2 LTR MaLR 1 367 0 7 1129 229 309 87 0 chr12 71422434 71422560 -49834970 - L1MCc LINE L1 -4890 1533 1397 7 1129 1149 75 0 0 chr12 71422925 71423071 -49834459 - B1_Mus2 SINE Alu 0 147 2 7 1129 897 124 21 63 chr12 71423132 71423322 -49834208 - URR1A DNA MER1_type -2 224 43 7 1129 312 294 75 25 chr12 71423741 71423940 -49833590 + L1MEa LINE L1 710 918 -5152 7 1129 374 311 17 0 chr12 71424066 71424185 -49833345 + L1MA4A LINE L1 5811 5931 -372 7 1129 26 50 0 0 chr12 71424582 71424622 -49832908 + AT_rich Low_complexity Low_complexity 1 40 0 7 1129 180 97 0 0 chr12 71424625 71424656 -49832874 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 1129 541 298 135 15 chr12 71424919 71425178 -49832352 - B4A SINE B4 -2 290 1 7 1129 242 323 200 21 chr12 71425481 71425671 -49831859 - MER82 DNA MER2_type -80 573 350 7 1129 247 238 0 0 chr12 71426266 71426329 -49831201 - RMER15 LTR ERVL -105 470 408 7 1129 605 332 43 43 chr12 71428894 71429240 -49828290 - ORR1E LTR MaLR -2 357 12 7 1129 338 245 93 9 chr12 71429763 71429870 -49827660 + PB1 SINE Alu 12 127 0 7 1129 341 183 0 90 chr12 71429878 71429956 -49827574 + ID4_ SINE ID 6 76 -7 7 1129 260 237 39 13 chr12 71430399 71430476 -49827054 + ID4 SINE ID 2 80 -3 7 1129 288 0 0 0 chr12 71430894 71430926 -49826604 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1129 441 0 0 0 chr12 71430926 71430974 -49826556 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1129 692 188 303 0 chr12 71431019 71431184 -49826346 - B3 SINE B2 0 216 2 7 1129 1463 63 16 16 chr12 71431469 71431663 -49825867 + B2_Mm2 SINE B2 1 194 -1 7 1129 1096 256 18 68 chr12 71432035 71432430 -49825100 + L1MB7 LINE L1 5270 5644 -530 7 1129 336 301 122 36 chr12 71432489 71432710 -49824820 - MER21B LTR ERV1 -207 656 417 7 1129 1094 305 44 15 chr12 71433059 71433535 -49823995 + L1MB7 LINE L1 5653 6142 -42 7 1130 191 315 22 0 chr12 71434647 71434736 -49822794 - L2 LINE L2 -938 2481 2391 7 1130 22 35 0 0 chr12 71434806 71434835 -49822695 + AT_rich Low_complexity Low_complexity 1 29 0 7 1130 312 215 111 25 chr12 71434835 71434916 -49822614 + PB1D10 SINE Alu 25 112 -5 7 1130 1811 240 161 49 chr12 71436624 71437494 -49820036 + RCHARR1 DNA MER1_type 1 966 -8 7 1130 7470 44 1 7 chr12 71437713 71438623 -49818907 + L1Md_F2 LINE L1 5677 6581 -1 7 1130 280 200 30 15 chr12 71438979 71439045 -49818485 + MIRb SINE MIR 34 100 -168 7 1130 264 59 0 0 chr12 71439098 71439132 -49818398 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1130 273 57 0 0 chr12 71440177 71440212 -49817318 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1130 627 268 31 25 chr12 71440215 71440269 -49817261 - B3A SINE B2 -35 163 111 7 1130 988 113 150 89 chr12 71440269 71440482 -49817048 - URR1A DNA MER1_type 0 226 1 7 1130 627 268 31 25 chr12 71440482 71440588 -49816942 - B3A SINE B2 -88 110 2 7 1130 373 279 89 85 chr12 71441166 71441448 -49816082 - Tigger7 DNA MER2_type -14 2477 2195 7 1130 769 287 119 4 chr12 71441494 71441763 -49815767 - Tigger7 DNA MER2_type -2183 308 9 7 1130 766 279 0 11 chr12 71441904 71442089 -49815441 + B3A SINE B2 1 183 -15 7 1130 21 0 0 0 chr12 71443405 71443426 -49814104 + AT_rich Low_complexity Low_complexity 1 21 0 7 1130 228 67 0 0 chr12 71443604 71443634 -49813896 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1130 250 300 0 0 chr12 71443652 71443722 -49813808 + B4 SINE B4 81 150 -142 7 1130 494 221 0 0 chr12 71443917 71444012 -49813518 + ID_B1 SINE B4 122 216 -8 7 1130 855 145 0 33 chr12 71444223 71444373 -49813157 + B1_Mur4 SINE Alu 6 150 0 7 1130 2718 45 0 54 chr12 71445643 71446016 -49811514 + L1_Mus2 LINE L1 6214 6566 0 7 1130 291 311 89 77 chr12 71446016 71446354 -49811176 - L2a LINE L2 -90 3336 2995 7 1130 843 138 49 25 chr12 71451223 71451386 -49806144 + ORR1B2 LTR MaLR 201 367 0 7 1130 253 360 31 46 chr12 71452069 71452264 -49805266 - ORR1E LTR MaLR -167 192 1 7 1130 764 292 64 0 chr12 71453021 71453257 -49804273 + B4A SINE B4 1 251 -41 7 1130 450 0 0 0 chr12 71453316 71453366 -49804164 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1130 459 0 0 0 chr12 71453366 71453416 -49804114 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1130 1610 159 123 9 chr12 71453437 71453779 -49803751 + ORR1B1 LTR MaLR 3 383 -11 7 1130 374 316 90 24 chr12 71453796 71454007 -49803523 + LTR16C LTR ERVL 263 487 -2 7 1130 832 207 41 0 chr12 71454068 71454237 -49803293 + L1MC2 LINE L1 5504 5679 -665 7 1130 843 311 96 6 chr12 71454238 71454562 -49802968 - MLT1A0 LTR MaLR 0 365 13 7 1130 585 0 0 0 chr12 71454589 71454654 -49802876 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 7 1130 701 109 0 9 chr12 71454660 71454771 -49802759 - B2_Mm2 SINE B2 -83 112 3 7 1130 418 309 128 0 chr12 71454781 71454969 -49802561 + L1MC2 LINE L1 5695 5906 -438 7 1130 240 214 0 0 chr12 71455326 71455382 -49802148 + CT-rich Low_complexity Low_complexity 2 57 0 7 1130 730 294 132 15 chr12 71455616 71455659 -49801871 - MT2A LTR ERVL -1 532 490 7 1130 840 10 0 0 chr12 71455659 71455756 -49801774 + (CA)n Simple_repeat Simple_repeat 2 98 0 7 1130 730 294 132 15 chr12 71455756 71456037 -49801493 - MT2A LTR ERVL -44 489 171 7 1130 2304 177 49 16 chr12 71456818 71457307 -49800223 - RLTR16 LTR ERVK 0 505 1 7 1130 443 300 90 43 chr12 71458565 71458844 -49798686 + B4A SINE B4 1 292 0 7 1130 294 333 80 40 chr12 71459896 71460121 -49797409 + MIRb SINE MIR 29 262 -6 7 1130 184 300 35 59 chr12 71460243 71460328 -49797202 + MIRm SINE MIR 97 179 -97 7 1130 198 0 0 0 chr12 71460424 71460446 -49797084 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 7 1130 4133 188 57 111 chr12 71461055 71462124 -49795406 + RMER1B Other Other 41 1051 -15 7 1130 21 36 0 0 chr12 71462200 71462228 -49795302 + AT_rich Low_complexity Low_complexity 1 28 0 7 1130 213 119 0 0 chr12 71463011 71463053 -49794477 + (T)n Simple_repeat Simple_repeat 1 42 0 7 1130 438 20 0 0 chr12 71463654 71463705 -49793825 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1130 529 172 17 0 chr12 71463707 71463881 -49793649 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 7 1130 511 308 108 45 chr12 71463946 71464279 -49793251 + MLT2B1 LTR ERVL 91 444 -76 7 1130 580 265 95 14 chr12 71464456 71464678 -49792852 - L1MB4 LINE L1 -12 6171 5932 7 1130 3762 151 57 21 chr12 71464713 71465381 -49792149 - RLTR17 LTR ERVK 0 692 1 7 1130 484 148 11 0 chr12 71465386 71465474 -49792056 - RMER3D-int LTR ERVK -5 2837 2749 7 1130 1010 76 0 14 chr12 71465488 71465635 -49791895 + B2_Mm1t SINE B2 35 179 -14 7 1130 259 125 310 51 chr12 71465720 71465836 -49791694 + B2_Mm2 SINE B2 47 192 -3 7 1130 2556 200 12 25 chr12 71465836 71466400 -49791130 - RMER3D-int LTR ERVK -84 2758 2202 7 1130 309 44 0 0 chr12 71466400 71466445 -49791085 - RLTR17 LTR ERVK -647 45 1 7 1130 659 262 82 0 chr12 71466822 71467028 -49790502 - L1MB4 LINE L1 -245 5935 5713 7 1130 1724 161 37 95 chr12 71467034 71467247 -49790283 + RMER10A LTR ERVL 9 227 -215 7 1130 1299 125 10 0 chr12 71467247 71467439 -49790091 - B2_Mm2 SINE B2 0 195 2 7 1130 1724 161 37 95 chr12 71467439 71467686 -49789844 + RMER10A LTR ERVL 228 442 0 7 1130 331 343 11 44 chr12 71467737 71467917 -49789613 - MLT2B1 LTR ERVL -288 232 59 7 1130 421 290 6 74 chr12 71467956 71468131 -49789399 + ID_B1 SINE B4 2 164 -60 7 1130 480 264 0 0 chr12 71468165 71468328 -49789202 + GA-rich Low_complexity Low_complexity 2 164 0 7 1130 450 0 0 0 chr12 71469081 71469131 -49788399 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1130 26 0 0 0 chr12 71471650 71471676 -49785854 + AT_rich Low_complexity Low_complexity 1 26 0 7 1130 7242 21 0 1 chr12 71472554 71473358 -49784172 - RLTR13B4 LTR ERVK 0 803 1 7 1130 345 82 0 0 chr12 71473798 71473847 -49783683 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 7 1130 216 0 0 0 chr12 71474414 71474438 -49783092 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1130 517 340 0 0 chr12 71474496 71474640 -49782890 + RSINE1 SINE B4 2 145 -20 8 1130 399 73 0 0 chr12 71474641 71474696 -49782834 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1130 455 286 0 18 chr12 71475199 71475313 -49782217 + B4 SINE B4 7 118 -174 8 1130 391 258 65 0 chr12 71475463 71475597 -49781933 + MTEa LTR MaLR 5 158 -221 8 1130 456 313 12 0 chr12 71477118 71477281 -49780249 + B4A SINE B4 113 277 -15 8 1130 28 48 0 0 chr12 71477344 71477386 -49780144 + AT_rich Low_complexity Low_complexity 1 42 0 8 1130 207 0 0 0 chr12 71477386 71477409 -49780121 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1130 854 140 59 0 chr12 71477411 71477547 -49779983 - B1_Mur4 SINE Alu -6 144 1 8 1130 364 281 83 0 chr12 71477648 71477744 -49779786 + ID_B1 SINE B4 98 201 -23 8 1130 504 0 0 0 chr12 71477823 71477879 -49779651 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1130 317 130 282 13 chr12 71477879 71477958 -49779572 - B1_Mus1 SINE Alu -12 138 37 8 1130 2041 128 6 0 chr12 71478067 71478386 -49779144 + ORR1A4 LTR MaLR 1 321 -8 8 1130 705 24 0 0 chr12 71478399 71478482 -49779048 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 8 1130 362 86 35 0 chr12 71478496 71478554 -49778976 + (TCCCC)n Simple_repeat Simple_repeat 4 63 0 8 1130 180 0 0 0 chr12 71478554 71478574 -49778956 + (TTTC)n Simple_repeat Simple_repeat 3 22 0 8 1130 1037 193 29 15 chr12 71478807 71479012 -49778518 - B3 SINE B2 -4 212 5 8 1130 207 0 0 0 chr12 71479243 71479266 -49778264 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1130 803 329 104 12 chr12 71479269 71479509 -49778021 - Lx8 LINE L1 -153 7320 7071 8 1130 369 0 0 0 chr12 71479509 71479550 -49777980 + (TCC)n Simple_repeat Simple_repeat 1 41 0 8 1130 803 329 104 12 chr12 71479550 71479789 -49777741 - Lx8 LINE L1 -403 7070 6798 8 1130 307 255 146 21 chr12 71479858 71480002 -49777528 - L1MC4 LINE L1 -689 7353 7192 8 1130 604 281 41 0 chr12 71480026 71480172 -49777358 + B3A SINE B2 3 154 -44 8 1130 423 0 0 0 chr12 71480173 71480220 -49777310 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1130 216 67 0 0 chr12 71480304 71480334 -49777196 + (TC)n Simple_repeat Simple_repeat 1 30 0 8 1130 22 0 0 0 chr12 71480350 71480372 -49777158 + AT_rich Low_complexity Low_complexity 1 22 0 8 1130 258 105 0 0 chr12 71480984 71481022 -49776508 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 8 1130 371 138 0 0 chr12 71481052 71481110 -49776420 + L1VL4 LINE L1 39 96 -6206 8 1130 6053 89 29 2 chr12 71481815 71482829 -49774701 + L1VL4 LINE L1 92 1138 -2421 8 1130 709 183 43 6 chr12 71482830 71482963 -49774567 + ETnERV2-int LTR ERVK 7070 7192 -214 8 1130 24343 149 35 19 chr12 71483341 71483535 -49773995 + Lx LINE L1 1489 1682 -4204 8 1130 189 0 0 0 chr12 71483535 71483556 -49773974 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 8 1130 24343 149 35 19 chr12 71483556 71483990 -49773540 + Lx LINE L1 1683 2137 -3749 8 1130 1209 34 0 39 chr12 71483990 71484143 -49773387 + B1_Mm SINE Alu 1 147 0 8 1130 24343 148 29 15 chr12 71484143 71488585 -49768945 + Lx LINE L1 2138 6634 -20 8 1130 525 230 10 10 chr12 71488764 71488894 -49768636 - L1M3 LINE L1 -373 5791 5662 8 1130 1268 79 6 0 chr12 71488970 71489148 -49768382 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 8 1130 1191 108 160 0 chr12 71490270 71490464 -49767066 - URR1A DNA MER1_type 0 226 2 8 1130 824 299 106 54 chr12 71490791 71491236 -49766294 + MLT2B2 LTR ERVL 1 468 -47 8 1130 328 155 28 0 chr12 71491238 71491309 -49766221 + CT-rich Low_complexity Low_complexity 3 75 0 8 1130 452 359 46 29 chr12 71491388 71491669 -49765861 + LTR16E1 LTR ERVL 240 525 -13 8 1130 441 0 0 0 chr12 71493353 71493402 -49764128 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1130 1791 71 4 0 chr12 71493621 71493861 -49763669 + Lx3_Mus LINE L1 6769 7009 0 8 1130 485 296 79 65 chr12 71494047 71494392 -49763138 + ORR1E LTR MaLR 1 367 -12 8 1130 1277 264 33 25 chr12 71494451 71494816 -49762714 + MTE-int LTR MaLR 114 481 -1099 8 1130 695 330 72 40 chr12 71494822 71495100 -49762430 + B4 SINE B4 6 292 0 8 1130 1710 315 98 47 chr12 71495134 71496149 -49761381 + MTE-int LTR MaLR 478 1544 -36 8 1130 286 331 138 0 chr12 71496211 71496392 -49761138 - MLT1A1 LTR MaLR -201 207 2 8 1130 948 201 50 25 chr12 71497762 71497961 -49759569 - B3 SINE B2 -5 211 8 8 1130 201 279 15 0 chr12 71498048 71498116 -49759414 + (TA)n Simple_repeat Simple_repeat 1 69 0 8 1130 785 183 49 0 chr12 71499610 71499793 -49757737 + L1_Mur3 LINE L1 876 1052 -6660 8 1130 1506 42 21 5 chr12 71499793 71499985 -49757545 - B2_Mm2 SINE B2 0 195 1 8 1130 4748 171 34 24 chr12 71500004 71501017 -49756513 + L1_Mur2 LINE L1 1026 2059 -3818 1 1130 186 43 0 0 chr12 71501017 71501040 -49756490 + (CCA)n Simple_repeat Simple_repeat 1 23 0 2 1130 4748 172 15 12 chr12 71501040 71501135 -49756395 + L1_Mur2 LINE L1 2060 2144 -3733 1 1130 3297 166 33 49 chr12 71501140 71501870 -49755660 + L1_Mur2 LINE L1 2890 3607 -2273 1 1130 285 284 84 80 chr12 71501897 71502208 -49755322 - MLT1A1 LTR MaLR 0 408 52 3 1130 211 200 0 0 chr12 71502925 71502965 -49754565 + GA-rich Low_complexity Low_complexity 1 40 0 4 1130 234 91 0 0 chr12 71503195 71503228 -49754302 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 5 1130 380 357 23 0 chr12 71506116 71506245 -49751285 + RSINE1 SINE B4 5 136 -29 6 1130 404 19 19 0 chr12 71506258 71506311 -49751219 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1130 364 375 0 7 chr12 71506533 71506678 -49750852 + MIRb SINE MIR 16 159 -109 8 1130 1402 81 27 0 chr12 71507500 71507685 -49749845 + B2_Mm2 SINE B2 2 191 -4 9 1130 211 250 54 0 chr12 71507795 71507851 -49749679 + MIR3 SINE MIR 104 162 -46 1 1130 306 240 38 57 chr12 71508012 71508118 -49749412 + ID_B1 SINE B4 118 221 -3 1 1130 308 283 0 0 chr12 71508142 71508202 -49749328 + ID4 SINE ID 2 61 -22 1 1130 1186 175 140 127 chr12 71508222 71508309 -49749221 + ORR1C2 LTR MaLR 1 86 -298 1 1130 2174 60 0 0 chr12 71508309 71508574 -49748956 + L1_Mus1 LINE L1 6303 6567 0 1 1130 1186 175 140 127 chr12 71508574 71508865 -49748665 + ORR1C2 LTR MaLR 87 384 0 1 1130 2049 175 19 12 chr12 71509217 71509640 -49747890 - MTC-int LTR MaLR -832 426 1 1 1130 1367 222 64 6 chr12 71509671 71509997 -49747533 - MTD LTR MaLR -59 360 16 1 1130 1424 86 16 0 chr12 71511048 71511235 -49746295 - B2_Mm2 SINE B2 -5 190 1 1 1130 362 309 7 54 chr12 71511694 71511841 -49745689 - L1M2c LINE L1 -3591 2898 2759 1 1130 826 256 75 82 chr12 71511841 71512267 -49745263 - RMER10A LTR ERVL -8 434 12 1 1130 647 271 109 62 chr12 71512378 71512927 -49744603 - L1M2c LINE L1 -3870 2652 2015 1 1130 462 284 71 71 chr12 71512946 71513143 -49744387 - B3A SINE B2 -1 197 1 2 1130 195 167 0 0 chr12 71514100 71514142 -49743388 + A-rich Low_complexity Low_complexity 1 42 0 2 1130 1626 181 24 38 chr12 71515413 71515786 -49741744 - ORR1D1 LTR MaLR -6 368 1 2 1130 762 290 78 4 chr12 71516118 71516388 -49741142 + B4A SINE B4 1 290 -2 2 1130 216 0 0 0 chr12 71516779 71516803 -49740727 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1130 1124 59 0 0 chr12 71517364 71517500 -49740030 + B1_Mm SINE Alu 4 139 -8 2 1130 261 0 0 0 chr12 71517500 71517529 -49740001 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1130 21 89 0 0 chr12 71518090 71518146 -49739384 + AT_rich Low_complexity Low_complexity 1 56 0 2 1130 1824 182 291 7 chr12 71518583 71519175 -49738355 + RMER1B Other Other 92 863 -203 2 1130 568 224 13 83 chr12 71519352 71519396 -49738134 + RMER1C Other Other 1198 1230 -112 2 1130 378 0 0 0 chr12 71519396 71519438 -49738092 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1130 568 224 13 83 chr12 71519438 71519549 -49737981 + RMER1C Other Other 1231 1342 0 2 1130 260 291 0 0 chr12 71519556 71519611 -49737919 - B1F2 SINE Alu -94 55 1 3 1130 207 204 23 0 chr12 71519611 71519655 -49737875 + (CATA)n Simple_repeat Simple_repeat 4 48 0 3 1130 1670 204 46 22 chr12 71519720 71520086 -49737444 - Lx3C LINE L1 -2 6974 6600 3 1130 252 250 39 26 chr12 71520086 71520164 -49737366 + PB1D10 SINE Alu 50 144 -5 3 1130 338 291 23 0 chr12 71520164 71520250 -49737280 + ID_B1 SINE B4 8 95 -129 3 1130 888 159 0 0 chr12 71520457 71520614 -49736916 + GA-rich Low_complexity Low_complexity 3 159 0 3 1130 450 0 0 0 chr12 71520719 71520769 -49736761 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1130 1028 86 173 0 chr12 71524537 71524699 -49732831 - B2_Mm2 SINE B2 -4 191 2 3 1130 488 275 87 30 chr12 71524752 71525018 -49732512 - MER63D DNA AcHobo -736 325 45 3 1130 184 336 56 9 chr12 71525058 71525166 -49732364 - MIR SINE MIR -92 170 58 3 1130 23 78 0 0 chr12 71525795 71525846 -49731684 + AT_rich Low_complexity Low_complexity 1 51 0 4 1130 1752 196 78 101 chr12 71525984 71526181 -49731349 - Lx7 LINE L1 0 7696 7497 4 1130 195 42 0 0 chr12 71526181 71526205 -49731325 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1130 1752 196 78 101 chr12 71526205 71526599 -49730931 - Lx7 LINE L1 -200 7496 7121 4 1130 25 51 0 0 chr12 71526654 71526693 -49730837 + AT_rich Low_complexity Low_complexity 1 39 0 4 1130 4024 136 58 17 chr12 71526830 71527481 -49730049 + RMER1B Other Other 388 1065 -1 4 1130 322 204 31 118 chr12 71527567 71527728 -49729802 + Lx9 LINE L1 7453 7599 -45 4 1130 2715 56 56 0 chr12 71527732 71528108 -49729422 + MTB_Mm LTR MaLR 1 397 -10 4 1130 1329 199 87 7 chr12 71528160 71528469 -49729061 + MTD LTR MaLR 86 419 0 4 1130 990 177 5 39 chr12 71528729 71528935 -49728595 + URR1A DNA MER1_type 27 225 -1 4 1130 475 324 81 0 chr12 71528941 71529126 -49728404 + Tigger7 DNA MER2_type 394 593 -1898 4 1130 483 18 0 0 chr12 71529130 71529186 -49728344 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1130 1508 123 23 0 chr12 71529303 71529523 -49728007 + URR1A DNA MER1_type 2 226 0 4 1130 274 387 36 0 chr12 71529728 71529896 -49727634 + MLT1J2 LTR MaLR 103 276 -172 5 1130 242 73 0 24 chr12 71530034 71530063 -49727467 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 5 1130 721 188 35 0 chr12 71530063 71530207 -49727323 + B1F2 SINE Alu 1 149 0 5 1130 242 73 0 24 chr12 71530207 71530219 -49727311 + (CAAAAA)n Simple_repeat Simple_repeat 3 14 0 5 1130 223 308 154 0 chr12 71531339 71531469 -49726061 + MIRb SINE MIR 42 191 -77 5 1130 504 162 51 13 chr12 71532078 71532215 -49725315 - RMER16 LTR ERVK -85 448 273 5 1130 378 0 0 0 chr12 71532420 71532462 -49725068 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1130 288 0 0 0 chr12 71532462 71532493 -49725037 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1130 772 259 135 30 chr12 71532567 71532937 -49724593 - MLT2B4 LTR ERVL -59 497 89 5 1130 223 310 0 0 chr12 71532960 71533018 -49724512 + ID4 SINE ID 16 73 -10 6 1130 459 219 62 39 chr12 71533340 71533396 -49724134 - MT2B2 LTR ERVL 0 584 533 6 1130 270 0 0 0 chr12 71533396 71533426 -49724104 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1130 459 219 62 39 chr12 71533426 71533497 -49724033 - MT2B2 LTR ERVL -52 532 454 6 1130 2294 165 45 33 chr12 71533497 71533918 -49723612 - MERVL_2A-int LTR ERVL -5335 426 1 6 1130 1219 223 128 141 chr12 71533918 71534456 -49723074 - MT2A LTR ERVL 0 533 3 6 1130 252 298 36 101 chr12 71534485 71534623 -49722907 - MIRb SINE MIR -67 201 73 6 1130 4661 83 12 28 chr12 71535618 71536299 -49721231 + L1_Mus3 LINE L1 5968 6637 -1 6 1130 330 26 0 0 chr12 71536326 71536365 -49721165 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1130 1204 55 7 0 chr12 71536521 71536666 -49720864 + B1_Mus2 SINE Alu 1 146 -1 6 1130 3186 344 24 29 chr12 71536709 71536884 -49720646 - RodERV21-int LTR ERV1 -232 4759 4580 6 1130 1274 108 32 0 chr12 71536884 71537069 -49720461 - B2_Mm1t SINE B2 -2 191 1 6 1130 3186 344 24 29 chr12 71537069 71538495 -49719035 - RodERV21-int LTR ERV1 -412 4579 3166 6 1130 339 347 8 14 chr12 71539069 71539376 -49718154 - MER52-int LTR ERV1 -1319 5772 5671 7 1130 366 307 37 35 chr12 71539772 71540097 -49717433 - MER52-int LTR ERV1 -1988 5103 4874 7 1130 531 323 22 44 chr12 71541628 71542036 -49715494 - MER52-int LTR ERV1 -3107 3984 3586 7 1130 965 204 48 10 chr12 71543206 71543414 -49714116 + B3 SINE B2 1 216 0 7 1130 1149 168 34 5 chr12 71543440 71543649 -49713881 + B3 SINE B2 2 216 0 7 1130 600 228 0 24 chr12 71543747 71543873 -49713657 - B1_Mur1 SINE Alu -26 123 1 7 1130 196 286 0 0 chr12 71544380 71544429 -49713101 - L2 LINE L2 -555 2864 2816 7 1130 859 161 176 11 chr12 71544683 71544871 -49712659 - URR1B DNA MER1_type -6 219 1 7 1130 675 235 167 6 chr12 71545405 71545585 -49711945 - B3 SINE B2 -6 210 2 7 1130 770 247 95 27 chr12 71546863 71547125 -49710405 + B4A SINE B4 2 281 -11 7 1130 226 257 42 28 chr12 71547128 71547200 -49710330 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 7 1130 589 311 57 4 chr12 71547216 71547461 -49710069 + MER2 DNA MER2_type 87 344 -1 7 1130 27 0 0 0 chr12 71547501 71547528 -49710002 + AT_rich Low_complexity Low_complexity 1 27 0 8 1130 23 33 0 0 chr12 71547649 71547679 -49709851 + AT_rich Low_complexity Low_complexity 1 30 0 8 1130 880 206 46 0 chr12 71547698 71547873 -49709657 - B3A SINE B2 -15 183 1 8 1130 568 276 70 5 chr12 71548280 71548466 -49709064 + B3A SINE B2 1 198 0 8 1130 271 223 60 60 chr12 71548754 71548854 -49708676 - MLT1B LTR MaLR -4 386 287 8 1130 1965 170 13 16 chr12 71548854 71549236 -49708294 - MTC LTR MaLR -5 416 36 8 1130 2752 306 72 36 chr12 71549267 71550152 -49707378 - L1_Mur3 LINE L1 -308 5572 4659 8 1130 366 23 0 0 chr12 71550152 71550195 -49707335 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1130 2752 306 72 36 chr12 71550195 71550909 -49706621 - L1_Mur3 LINE L1 -1222 4658 3915 8 1130 1833 168 81 76 chr12 71550953 71551372 -49706158 - MTC LTR MaLR 0 421 1 8 1130 1069 136 0 11 chr12 71551457 71551635 -49705895 + Lx2 LINE L1 6822 6997 0 8 1130 207 0 0 0 chr12 71551637 71551660 -49705870 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9 1130 23 33 0 0 chr12 71551741 71551771 -49705759 + AT_rich Low_complexity Low_complexity 1 30 0 9 1130 1195 131 11 0 chr12 71551802 71551978 -49705552 + B2_Mm1t SINE B2 2 179 -14 9 1130 270 200 0 0 chr12 71552025 71552080 -49705450 + B2_Mm2 SINE B2 47 101 -94 9 1130 231 36 0 0 chr12 71552106 71552134 -49705396 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 9 1130 1156 58 0 0 chr12 71552156 71552294 -49705236 + B1_Mus2 SINE Alu 1 138 -9 9 1130 180 0 0 0 chr12 71552315 71552335 -49705195 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 9 1130 317 255 10 31 chr12 71552335 71552432 -49705098 - MLT1B LTR MaLR -295 95 1 9 1130 668 339 12 37 chr12 71552522 71552767 -49704763 + L1M4b LINE L1 156 394 -6940 9 1130 1311 253 214 27 chr12 71552937 71553648 -49703882 + L1M4b LINE L1 716 1559 -5775 9 1130 238 175 0 17 chr12 71555848 71555906 -49701624 + Lx4B LINE L1 7002 7058 0 9 1130 279 0 0 0 chr12 71556663 71556694 -49700836 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1130 336 235 66 38 chr12 71556779 71556885 -49700645 - PB1D7 SINE Alu -1 119 11 1 1130 3988 199 150 11 chr12 71558339 71559380 -49698150 + L1_Mur3 LINE L1 3179 4363 -1517 1 1130 16368 64 21 10 chr12 71561584 71563909 -49693621 - MusHAL1 LINE L1 0 3914 1686 1 1130 1341 69 12 0 chr12 71563909 71564082 -49693448 - B2_Mm1t SINE B2 -18 175 1 1 1130 12371 99 11 67 chr12 71564082 71565276 -49692254 - MusHAL1 LINE L1 -4187 1696 562 1 1131 247 288 30 0 chr12 71565475 71565541 -49691989 - ID4_ SINE ID -6 77 10 1 1131 317 316 109 14 chr12 71566098 71566236 -49691294 - MER20 DNA MER1_type -68 151 1 1 1131 567 0 0 0 chr12 71569397 71569460 -49688070 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1131 421 272 40 0 chr12 71569609 71569734 -49687796 + B3A SINE B2 43 172 -26 1 1131 243 0 0 0 chr12 71570541 71570568 -49686962 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1131 237 180 0 57 chr12 71570594 71570647 -49686883 - B3 SINE B2 -125 91 42 1 1131 324 67 50 0 chr12 71571639 71571699 -49685831 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1131 609 320 120 54 chr12 71571742 71572227 -49685303 + MER21B LTR ERV1 19 535 -328 1 1131 371 244 33 0 chr12 71572825 71572915 -49684615 - PB1D10 SINE Alu -6 111 19 1 1131 21 0 0 0 chr12 71573000 71573021 -49684509 + AT_rich Low_complexity Low_complexity 1 21 0 1 1131 351 0 0 0 chr12 71573045 71573084 -49684446 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1131 500 253 144 6 chr12 71573136 71573303 -49684227 - Lx7 LINE L1 -1914 5782 5593 1 1131 1390 296 107 26 chr12 71573337 71574127 -49683403 + L1M2 LINE L1 4614 5447 -433 1 1131 619 205 55 8 chr12 71574136 71574264 -49683266 + B1_Mus2 SINE Alu 1 134 -13 1 1131 221 0 35 0 chr12 71574264 71574293 -49683237 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 1131 930 196 66 9 chr12 71574468 71574679 -49682851 + URR1A DNA MER1_type 4 226 0 1 1131 415 322 102 10 chr12 71574902 71575160 -49682370 - L1MEd LINE L1 -4884 1235 954 1 1131 180 0 0 0 chr12 71575160 71575180 -49682350 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1131 415 322 102 10 chr12 71575180 71575216 -49682314 - L1MEd LINE L1 -5166 953 915 1 1131 674 134 129 40 chr12 71575749 71575873 -49681657 + B1_Mur2 SINE Alu 1 135 -14 1 1131 327 231 0 0 chr12 71576405 71576470 -49681060 - RMER30 DNA MER1_type -3 199 135 1 1131 1964 115 182 22 chr12 71576900 71577263 -49680267 + MTC LTR MaLR 1 421 0 1 1131 213 121 0 0 chr12 71577529 71577562 -49679968 + (TCCC)n Simple_repeat Simple_repeat 1 33 0 1 1131 414 79 0 0 chr12 71577562 71577625 -49679905 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 1 1131 486 61 0 0 chr12 71577633 71577699 -49679831 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1131 216 67 0 0 chr12 71577830 71577860 -49679670 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1131 25 0 0 0 chr12 71578397 71578422 -49679108 + AT_rich Low_complexity Low_complexity 1 25 0 1 1131 344 367 73 12 chr12 71578663 71578911 -49678619 - LTR16E2 LTR ERVL -31 537 275 1 1131 295 299 83 26 chr12 71579337 71579529 -49678001 - L1MC4a LINE L1 -12 7870 7668 1 1131 237 320 120 63 chr12 71579547 71579988 -49677542 - L1MC4a LINE L1 -305 7577 7112 1 1131 443 260 184 6 chr12 71580032 71580206 -49677324 - L1MC4a LINE L1 -907 6975 6771 1 1131 630 219 0 17 chr12 71580230 71580346 -49677184 - B1_Mur2 SINE Alu -31 118 5 1 1131 367 336 0 42 chr12 71580346 71580373 -49677157 - ID_B1 SINE B4 -28 196 60 1 1131 341 288 15 22 chr12 71580408 71580543 -49676987 + ORR1C2 LTR MaLR 5 138 -246 1 1131 40487 25 0 6 chr12 71580895 71586863 -49670667 - L1Md_T LINE L1 -1 6581 655 1 1131 1120 69 7 0 chr12 71586947 71587092 -49670438 - B1_Mus1 SINE Alu -1 147 2 1 1131 240 191 0 0 chr12 71587173 71587223 -49670307 - B1F SINE Alu -9 140 62 1 1131 1044 284 37 6 chr12 71587227 71587550 -49669980 + MTE2b LTR MaLR 1 333 -46 1 1131 360 216 0 0 chr12 71587552 71587649 -49669881 + CT-rich Low_complexity Low_complexity 2 98 0 1 1131 3546 79 107 0 chr12 71587676 71588172 -49669358 - Lx3B LINE L1 -3 6970 6422 1 1131 839 249 74 44 chr12 71588232 71588768 -49668762 + MTE2b-int LTR MaLR 5 357 -1223 1 1131 1280 289 46 16 chr12 71588819 71589438 -49668092 - L1M2 LINE L1 -874 5423 4781 1 1131 2311 80 3 21 chr12 71589462 71589738 -49667792 - ORR1A2 LTR MaLR 0 327 56 1 1131 7527 13 2 0 chr12 71589738 71590558 -49666972 - RLTR13B2 LTR ERVK 0 822 1 1 1131 2311 80 3 21 chr12 71590558 71590614 -49666916 - ORR1A2 LTR MaLR -272 55 1 1 1131 1452 241 91 62 chr12 71590621 71591267 -49666263 - L1M2 LINE L1 -1401 4742 4078 1 1131 355 216 59 81 chr12 71591300 71591436 -49666094 - L1_Mur2 LINE L1 -1328 4552 4420 1 1131 1707 156 103 22 chr12 71591469 71591829 -49665701 + ORR1B1 LTR MaLR 6 394 0 1 1131 605 215 99 28 chr12 71591875 71592055 -49665475 - B3A SINE B2 -28 188 3 1 1131 376 323 50 35 chr12 71592056 71592336 -49665194 - L1M4 LINE L1 -3114 3032 2757 1 1131 2195 115 116 21 chr12 71592922 71593303 -49664227 + MTC LTR MaLR 4 420 -1 1 1131 380 269 15 35 chr12 71593330 71593462 -49664068 + B1_Mur1 SINE Alu 1 149 0 1 1131 1674 256 75 6 chr12 71594092 71594575 -49662955 + MT2A LTR ERVL 6 521 -12 1 1131 621 215 44 33 chr12 71594594 71594777 -49662753 - L1_Mur3 LINE L1 -450 5430 5246 1 1131 609 289 79 68 chr12 71595026 71595394 -49662136 + Lx8 LINE L1 6134 6505 -968 1 1131 396 0 0 0 chr12 71595394 71595438 -49662092 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1131 1405 97 0 0 chr12 71596031 71596216 -49661314 - Lx LINE L1 -411 6243 6059 1 1131 2409 134 25 22 chr12 71596216 71596621 -49660909 + Lx LINE L1 6241 6646 -8 1 1131 228 35 0 0 chr12 71596630 71596659 -49660871 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1131 715 218 0 52 chr12 71597449 71597604 -49659926 - B1_Mur1 SINE Alu -2 147 1 1 1131 1047 129 157 54 chr12 71598711 71598915 -49658615 + URR1B DNA MER1_type 1 225 0 1 1131 201 250 0 0 chr12 71599641 71599685 -49657845 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1131 992 247 11 62 chr12 71599687 71599959 -49657571 - B4 SINE B4 0 292 35 1 1131 374 269 51 29 chr12 71600079 71600217 -49657313 - L1ME1 LINE L1 -181 5998 5858 1 1131 1378 229 20 94 chr12 71600261 71600666 -49656864 - MTE2a LTR MaLR -2 377 3 1 1131 288 327 0 19 chr12 71600771 71600877 -49656653 - LTR33 LTR ERVL -406 109 6 1 1131 1660 107 43 77 chr12 71600995 71601319 -49656211 - ORR1A2 LTR MaLR 0 327 15 1 1131 355 319 7 0 chr12 71601602 71601737 -49655793 + (ATG)n Simple_repeat Simple_repeat 3 138 0 1 1131 485 272 25 25 chr12 71601767 71601929 -49655601 - HAL1-2a_MD LINE L1 -518 2506 2345 1 1131 253 301 198 6 chr12 71602692 71602869 -49654661 + LTR50 LTR ERVL 10 220 -575 1 1131 248 340 101 0 chr12 71603242 71603401 -49654129 - L1MB2 LINE L1 -61 6110 5936 1 1131 1052 231 5 14 chr12 71605335 71605546 -49651984 + B3 SINE B2 6 214 -2 1 1131 248 278 69 0 chr12 71605572 71605692 -49651838 + ID4_ SINE ID 1 128 -24 1 1131 504 288 251 19 chr12 71605821 71606306 -49651224 + Kanga1 DNA Tc2 1 598 -1147 1 1131 207 0 0 0 chr12 71606364 71606387 -49651143 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1131 237 363 28 56 chr12 71608312 71608420 -49649110 - L2c LINE L2 0 3387 3283 1 1131 1506 64 16 0 chr12 71608468 71608656 -49648874 + B2_Mm2 SINE B2 4 194 -1 1 1131 1538 62 0 5 chr12 71610305 71610500 -49647030 + B2_Mm2 SINE B2 1 194 -1 1 1131 441 238 110 14 chr12 71610573 71610718 -49646812 - MER5A1 DNA MER1_type -7 159 1 1 1131 283 370 30 50 chr12 71610944 71611146 -49646384 - MIRb SINE MIR -68 200 3 1 1131 274 276 204 27 chr12 71611557 71611777 -49645753 - MIR SINE MIR -1 261 3 1 1131 670 304 95 44 chr12 71612191 71612508 -49645022 - MER44A DNA MER2_type 0 339 7 1 1131 253 313 60 0 chr12 71613242 71613325 -49644205 + Tigger12 DNA MER2_type 25 112 -1847 1 1131 234 189 0 198 chr12 71613533 71613619 -49643911 - B3A SINE B2 -4 194 126 1 1131 1560 240 35 24 chr12 71613633 71614004 -49643526 - MTD LTR MaLR -44 375 1 1 1131 266 277 40 60 chr12 71614006 71614106 -49643424 - B3A SINE B2 -67 131 34 1 1131 7421 223 84 30 chr12 71614353 71614497 -49643033 - Lx6 LINE L1 -15 7445 7269 1 1131 267 54 0 0 chr12 71614497 71614534 -49642996 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 1 1131 24345 178 63 34 chr12 71614534 71617597 -49639933 - Lx6 LINE L1 -192 7268 4183 1 1131 447 35 0 0 chr12 71617597 71617654 -49639876 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1131 24345 143 46 36 chr12 71617654 71618934 -49638596 - Lx6 LINE L1 -1698 4182 2883 1 1131 1105 82 0 39 chr12 71618934 71618948 -49638582 - B1_Mus1 SINE Alu 0 148 137 1 1131 216 0 0 0 chr12 71618948 71618972 -49638558 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1131 1105 82 0 39 chr12 71618972 71619110 -49638420 - B1_Mus1 SINE Alu -12 136 2 1 1131 24345 143 46 36 chr12 71619110 71619892 -49637638 - Lx6 LINE L1 -2998 2882 2058 1 1131 567 29 0 0 chr12 71619892 71619961 -49637569 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1131 24345 188 95 63 chr12 71619961 71621472 -49636058 - Lx6 LINE L1 -3823 2057 20 1 1131 392 328 48 19 chr12 71621485 71621693 -49635837 - L1ME4a LINE L1 -279 5845 5632 1 1131 3180 103 16 35 chr12 71622020 71622504 -49635026 - MT2C_Mm LTR ERVL 0 475 1 1 1131 525 239 110 42 chr12 71622547 71622783 -49634747 - Tigger7 DNA MER2_type -64 2427 2176 1 1131 945 300 69 0 chr12 71622808 71623085 -49634445 - Tigger7 DNA MER2_type -2183 308 13 1 1131 378 0 0 0 chr12 71623439 71623481 -49634049 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1131 852 156 0 0 chr12 71623619 71623799 -49633731 + GA-rich Low_complexity Low_complexity 1 180 0 1 1131 378 57 0 0 chr12 71625623 71625676 -49631854 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1131 297 75 0 0 chr12 71625676 71625716 -49631814 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1131 272 340 105 42 chr12 71627172 71627504 -49630026 - L3 LINE CR1 -595 3894 3542 1 1131 2472 132 60 20 chr12 71628179 71628582 -49628948 - MTC LTR MaLR 0 421 3 1 1131 755 73 18 0 chr12 71629346 71629456 -49628074 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 1 1131 181 312 20 30 chr12 71629481 71629580 -49627950 - L2a LINE L2 -42 3384 3287 2 1131 213 234 21 0 chr12 71629581 71629628 -49627902 - PB1D7 SINE Alu -4 116 69 2 1131 536 353 141 3 chr12 71629917 71630272 -49627258 - MTE-int LTR MaLR -1134 446 43 2 1131 200 385 96 20 chr12 71630795 71631097 -49626433 - L2a LINE L2 -469 2950 2626 2 1131 234 127 254 0 chr12 71631950 71632005 -49625525 + L1_Mur3 LINE L1 5286 5354 -526 2 1131 1124 250 96 20 chr12 71631986 71632355 -49625175 + Lx7 LINE L1 7000 7414 -282 2 1131 1005 95 7 26 chr12 71632362 71632513 -49625017 - B1_Mus1 SINE Alu 0 148 1 2 1131 1256 200 62 10 chr12 71632543 71632831 -49624699 + Lx7 LINE L1 7356 7658 -38 2 1131 203 167 28 0 chr12 71634143 71634179 -49623351 + GA-rich Low_complexity Low_complexity 2 38 0 2 1131 2296 309 95 16 chr12 71635026 71635956 -49621574 - Lx8 LINE L1 -59 7414 6412 2 1131 4100 140 94 68 chr12 71635957 71636825 -49620705 + RMER19B LTR ERVK 1 891 -11 2 1131 860 247 47 0 chr12 71636832 71637022 -49620508 - Lx8 LINE L1 -1054 6419 6221 2 1131 678 280 40 60 chr12 71637023 71637274 -49620256 + MTD LTR MaLR 1 246 -173 2 1131 228 35 0 0 chr12 71637274 71637303 -49620227 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 2 1131 285 164 73 0 chr12 71637312 71637367 -49620163 - MERVL-int LTR ERVL -973 4512 4454 2 1131 3420 292 54 41 chr12 71637414 71639217 -49618313 - L1M2 LINE L1 -2892 3690 1808 2 1131 225 0 0 0 chr12 71639666 71639691 -49617839 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1131 240 226 0 16 chr12 71639860 71639923 -49617607 + T-rich Low_complexity Low_complexity 3 64 0 2 1131 27 0 0 0 chr12 71640044 71640071 -49617459 + AT_rich Low_complexity Low_complexity 1 27 0 2 1131 248 365 28 0 chr12 71642309 71642416 -49615114 - MIRb SINE MIR -40 228 119 2 1131 360 210 0 0 chr12 71644329 71644410 -49613120 + CT-rich Low_complexity Low_complexity 2 82 0 2 1131 375 265 154 6 chr12 71644648 71644814 -49612716 + MIR SINE MIR 31 218 -50 2 1131 233 250 116 49 chr12 71644834 71644998 -49612532 - MIR SINE MIR -75 187 13 2 1131 246 23 22 44 chr12 71648290 71648335 -49609195 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 2 1131 244 259 0 0 chr12 71649175 71649233 -49608297 - L1MEd LINE L1 -5610 509 452 2 1131 1343 148 0 0 chr12 71649268 71649484 -49608046 - URR1B DNA MER1_type -9 216 1 2 1131 426 290 96 6 chr12 71649484 71649638 -49607892 + ID_B1 SINE B4 46 213 -11 2 1131 489 127 0 0 chr12 71649879 71649958 -49607572 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 1131 469 277 135 100 chr12 71650953 71651234 -49606296 + B4A SINE B4 2 292 0 2 1131 305 206 52 70 chr12 71651322 71651437 -49606093 - L1ME4a LINE L1 -114 6010 5898 2 1131 1092 300 100 27 chr12 71651937 71652029 -49605501 - L1MA5 LINE L1 -31 6269 6183 2 1131 2211 102 12 33 chr12 71652029 71652362 -49605168 - ORR1A2 LTR MaLR -1 326 1 2 1131 1092 300 100 27 chr12 71652362 71652873 -49604657 - L1MA5 LINE L1 -118 6182 5640 2 1131 875 150 205 16 chr12 71652873 71653063 -49604467 - URR1A DNA MER1_type 0 226 1 2 1131 1092 265 91 40 chr12 71653063 71653203 -49604327 - L1MA5 LINE L1 -661 5639 5469 2 1131 811 192 17 0 chr12 71653315 71653560 -49603970 + GA-rich Low_complexity Low_complexity 1 249 0 2 1131 22 0 0 0 chr12 71653703 71653725 -49603805 + AT_rich Low_complexity Low_complexity 1 22 0 2 1131 240 268 70 26 chr12 71654120 71654235 -49603295 - L1MA9 LINE L1 -253 6059 5940 2 1131 272 257 82 52 chr12 71654431 71654567 -49602963 - MLT1B LTR MaLR 0 390 236 2 1131 1074 73 0 0 chr12 71654622 71654758 -49602772 - B1_Mus1 SINE Alu -12 136 1 2 1131 235 279 33 44 chr12 71656137 71656227 -49601303 + MLT1E1A LTR MaLR 583 671 -9 2 1131 255 61 0 0 chr12 71658564 71658597 -49598933 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 2 1131 549 253 22 76 chr12 71658615 71658799 -49598731 + B3A SINE B2 2 175 -23 2 1131 237 314 74 25 chr12 71659243 71659364 -49598166 - MIR SINE MIR -14 248 122 2 1131 1074 131 6 6 chr12 71659514 71659691 -49597839 - URR1A DNA MER1_type 0 226 50 2 1131 185 196 20 0 chr12 71660899 71660950 -49596580 + GA-rich Low_complexity Low_complexity 1 52 0 2 1131 294 227 0 0 chr12 71661073 71661148 -49596382 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1131 30 0 0 0 chr12 71661158 71661188 -49596342 + AT_rich Low_complexity Low_complexity 1 30 0 2 1131 411 132 0 0 chr12 71662622 71662690 -49594840 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1131 223 167 0 48 chr12 71662798 71662861 -49594669 + GA-rich Low_complexity Low_complexity 1 60 0 2 1131 355 337 67 68 chr12 71663063 71663450 -49594080 + L1MC4 LINE L1 6645 7010 -1032 2 1131 448 340 62 44 chr12 71663450 71663559 -49593971 + MER2 DNA MER2_type 1 107 -238 2 1131 885 71 158 0 chr12 71663559 71663686 -49593844 - B1_Mus1 SINE Alu 0 148 2 2 1131 448 340 62 44 chr12 71663686 71663914 -49593616 + MER2 DNA MER2_type 108 344 -1 2 1131 345 331 68 75 chr12 71663914 71664017 -49593513 + L1MC4 LINE L1 6965 7066 -895 2 1131 535 216 139 5 chr12 71664073 71664282 -49593248 - Lx7 LINE L1 0 7696 7460 2 1131 811 210 61 22 chr12 71664282 71664462 -49593068 + Lx7 LINE L1 7225 7411 -285 2 1131 376 276 65 0 chr12 71665193 71665316 -49592214 + MIRb SINE MIR 24 154 -114 2 1131 409 200 0 12 chr12 71665445 71665526 -49592004 - URR1A DNA MER1_type -119 107 28 2 1131 1117 243 28 28 chr12 71665654 71665942 -49591588 + B4 SINE B4 5 292 0 2 1131 23 33 0 0 chr12 71666053 71666083 -49591447 + AT_rich Low_complexity Low_complexity 1 30 0 2 1131 246 331 84 0 chr12 71666403 71666438 -49591092 - MER5B DNA MER1_type -16 162 126 2 1131 360 0 0 0 chr12 71666438 71666478 -49591052 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 2 1131 246 331 84 0 chr12 71666478 71666584 -49590946 - MER5B DNA MER1_type -53 125 10 2 1131 306 0 0 0 chr12 71667016 71667050 -49590480 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1131 623 278 25 76 chr12 71667050 71667326 -49590204 - Lx8 LINE L1 -1396 6077 5816 2 1131 3351 145 18 4 chr12 71667333 71667895 -49589635 - RMER15 LTR ERVL -2 573 4 2 1131 1203 258 15 28 chr12 71667911 71668238 -49589292 - Lx8 LINE L1 -77 5770 5448 2 1131 3329 265 54 31 chr12 71668265 71668336 -49589194 + Lx8 LINE L1 6298 6366 -1107 2 1131 3067 55 54 3 chr12 71668336 71668722 -49588808 - MTB_Mm LTR MaLR -1 406 1 2 1131 3329 265 54 31 chr12 71668722 71669647 -49587883 + Lx8 LINE L1 6367 7317 -156 2 1131 756 89 0 0 chr12 71669659 71669782 -49587748 + (GA)n Simple_repeat Simple_repeat 1 123 0 2 1131 2616 121 8 13 chr12 71670022 71670416 -49587114 - ORR1B1 LTR MaLR -2 392 1 2 1131 2498 98 0 0 chr12 71671059 71671385 -49586145 - ORR1A3 LTR MaLR 0 326 1 2 1131 513 261 58 7 chr12 71671833 71671972 -49585558 - B1_Mur3 SINE Alu -1 148 3 2 1131 323 299 90 23 chr12 71672497 71672688 -49584842 + MIR SINE MIR 3 220 -48 2 1131 557 298 111 22 chr12 71673121 71673392 -49584138 + MER2 DNA MER2_type 51 345 0 2 1131 258 82 48 32 chr12 71673457 71673520 -49584010 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 2 1131 712 210 21 0 chr12 71673520 71673663 -49583867 - B1_Mur1 SINE Alu -1 148 3 2 1131 720 128 0 0 chr12 71673847 71673980 -49583550 + (TG)n Simple_repeat Simple_repeat 2 134 0 2 1131 228 67 0 0 chr12 71673980 71674010 -49583520 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 2 1131 537 269 45 0 chr12 71674016 71674150 -49583380 - RSINE1 SINE B4 -13 152 13 2 1131 450 292 0 9 chr12 71674348 71674455 -49583075 + PB1D10 SINE Alu 5 110 -7 2 1131 450 0 0 0 chr12 71674693 71674743 -49582787 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2 1131 780 142 0 0 chr12 71674746 71674866 -49582664 - B1_Mus1 SINE Alu -6 142 23 2 1131 447 333 88 10 chr12 71675292 71675486 -49582044 - MER2 DNA MER2_type 0 345 137 2 1131 23 86 0 0 chr12 71675493 71675551 -49581979 + AT_rich Low_complexity Low_complexity 1 58 0 2 1131 268 213 32 32 chr12 71675619 71675682 -49581848 - RSINE1 SINE B4 -87 78 16 2 1131 222 328 0 0 chr12 71675765 71675826 -49581704 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1131 378 0 0 0 chr12 71675933 71675975 -49581555 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1131 213 309 0 0 chr12 71676244 71676312 -49581218 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1131 208 324 0 0 chr12 71679460 71679529 -49578001 + MIRb SINE MIR 113 181 -87 2 1131 284 364 14 7 chr12 71680287 71680431 -49577099 - L3b LINE CR1 -329 153 9 2 1131 519 17 0 0 chr12 71680729 71680789 -49576741 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1131 1128 138 0 17 chr12 71681686 71681863 -49575667 + B2_Mm2 SINE B2 3 176 -19 2 1131 434 309 52 52 chr12 71682440 71682631 -49574899 + MLT1G1 LTR MaLR 389 579 0 2 1131 210 208 0 0 chr12 71682631 71682679 -49574851 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1131 931 283 54 64 chr12 71683354 71683743 -49573787 - L1MB1 LINE L1 -22 6146 5762 2 1131 497 250 32 83 chr12 71683743 71683961 -49573569 - MTEb LTR MaLR 0 379 173 2 1131 277 254 16 0 chr12 71683962 71684025 -49573505 - MTEb LTR MaLR -315 64 1 2 1131 634 263 39 63 chr12 71684026 71684310 -49573220 - L1MB1 LINE L1 -403 5765 5489 2 1131 324 297 0 0 chr12 71684385 71684459 -49573071 - PB1D10 SINE Alu -21 96 23 2 1131 503 143 27 113 chr12 71684465 71684615 -49572915 - L1M3 LINE L1 -743 5440 5304 2 1131 186 143 0 0 chr12 71684622 71684657 -49572873 + (TCC)n Simple_repeat Simple_repeat 3 37 0 2 1131 328 237 140 7 chr12 71684797 71684933 -49572597 - L1M3 LINE L1 -840 5303 5147 2 1131 186 208 0 0 chr12 71684955 71685003 -49572527 + CT-rich Low_complexity Low_complexity 3 50 0 2 1131 1696 302 53 23 chr12 71685244 71685905 -49571625 + L1MB2 LINE L1 5448 6128 -43 2 1131 1321 121 23 0 chr12 71685910 71686125 -49571405 + URR1B DNA MER1_type 6 225 0 2 1131 408 40 0 0 chr12 71687165 71687215 -49570315 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1131 743 299 59 11 chr12 71687223 71687494 -49570036 - B4 SINE B4 -7 285 2 2 1131 495 305 99 15 chr12 71688746 71689009 -49568521 - MLT1B LTR MaLR -29 361 77 2 1131 666 0 0 0 chr12 71690866 71690940 -49566590 + (GAA)n Simple_repeat Simple_repeat 1 74 0 2 1131 1194 102 0 0 chr12 71690940 71691116 -49566414 + (GGA)n Simple_repeat Simple_repeat 3 178 0 2 1131 768 219 12 48 chr12 71692605 71692773 -49564757 + RSINE1 SINE B4 4 165 0 2 1131 333 362 44 22 chr12 71692858 71693129 -49564401 + Lx8 LINE L1 7184 7460 -13 3 1131 32 0 0 0 chr12 71694502 71694534 -49562996 + AT_rich Low_complexity Low_complexity 1 32 0 3 1131 207 0 0 0 chr12 71694691 71694714 -49562816 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1131 376 325 19 76 chr12 71695564 71695774 -49561756 - MIR SINE MIR 0 262 65 3 1132 753 70 0 0 chr12 71696831 71696931 -49560599 + (TA)n Simple_repeat Simple_repeat 2 101 0 3 1132 222 387 59 13 chr12 71697536 71697688 -49559842 - MIR3 SINE MIR -4 204 46 3 1132 446 272 16 16 chr12 71698403 71698530 -49559000 - Tigger13a DNA MER2_type -491 280 154 3 1132 338 267 23 0 chr12 71698793 71698879 -49558651 - L1M5 LINE L1 -476 5648 5561 3 1132 345 305 9 0 chr12 71700498 71700603 -49556927 - PB1D10 SINE Alu 0 117 12 3 1132 27 49 0 0 chr12 71700618 71700659 -49556871 + AT_rich Low_complexity Low_complexity 1 41 0 3 1132 819 259 11 5 chr12 71700662 71700848 -49556682 - Lx5 LINE L1 -7 7043 6857 3 1132 816 174 34 39 chr12 71700868 71701047 -49556483 - B3 SINE B2 -38 178 1 3 1132 432 0 0 0 chr12 71701157 71701205 -49556325 + (TATG)n Simple_repeat Simple_repeat 2 49 0 3 1132 876 61 23 0 chr12 71701319 71701451 -49556079 + (TG)n Simple_repeat Simple_repeat 1 135 0 3 1132 254 308 0 0 chr12 71701460 71701525 -49556005 - ID4_ SINE ID -18 65 1 3 1132 325 291 103 0 chr12 71701824 71701989 -49555541 - L1M5 LINE L1 -1549 4597 4416 3 1132 694 254 18 139 chr12 71702060 71702390 -49555140 - B4 SINE B4 -2 290 1 3 1132 1169 246 89 15 chr12 71702430 71702676 -49554854 + MTEb LTR MaLR 1 259 -120 3 1132 3154 66 2 5 chr12 71702676 71703072 -49554458 + MTA_Mm LTR MaLR 2 396 0 3 1132 1169 246 89 15 chr12 71703072 71703163 -49554367 + MTEb LTR MaLR 260 362 -17 3 1132 742 226 132 14 chr12 71703402 71703728 -49553802 + RMER20B LTR ERVK 10 407 -220 3 1132 307 300 182 0 chr12 71703886 71704193 -49553337 - L1M5 LINE L1 -2386 3760 3398 3 1132 545 174 244 0 chr12 71704231 71704346 -49553184 - B1_Mur4 SINE Alu -7 143 1 3 1132 307 292 36 0 chr12 71704427 71704564 -49552966 - L1M5 LINE L1 -3207 2939 2798 3 1132 387 0 0 0 chr12 71704852 71704895 -49552635 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1132 333 288 91 66 chr12 71705009 71705187 -49552343 - MTC LTR MaLR -219 202 7 3 1132 510 70 0 0 chr12 71705194 71705265 -49552265 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1132 424 269 76 222 chr12 71705269 71705584 -49551946 - B4 SINE B4 -23 269 1 3 1132 692 172 0 0 chr12 71705629 71705745 -49551785 - B1_Mus2 SINE Alu 0 147 32 3 1132 362 261 91 43 chr12 71706200 71706374 -49551156 - B3A SINE B2 -9 186 7 3 1132 219 69 0 0 chr12 71707403 71707432 -49550098 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1132 24 32 0 0 chr12 71707633 71707664 -49549866 + AT_rich Low_complexity Low_complexity 1 31 0 3 1132 204 40 0 0 chr12 71707872 71707897 -49549633 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1132 1239 48 0 0 chr12 71707897 71708044 -49549486 - B1_Mus2 SINE Alu 0 147 1 3 1132 825 156 8 0 chr12 71708355 71708483 -49549047 + B1_Mur3 SINE Alu 10 138 -11 3 1132 340 280 47 31 chr12 71709682 71709811 -49547719 + MLT1J1 LTR MaLR 190 320 -124 3 1132 277 356 151 24 chr12 71709925 71710549 -49546981 + MLT1J1-int LTR MaLR 15 717 -670 3 1132 725 288 35 32 chr12 71710827 71711110 -49546420 - RMER15 LTR ERVL -22 553 270 3 1132 302 277 57 25 chr12 71711132 71711254 -49546276 - RMER15 LTR ERVL -445 130 5 3 1132 253 326 10 20 chr12 71711400 71711500 -49546030 - PB1D10 SINE Alu -2 115 17 3 1132 348 239 40 87 chr12 71712523 71712658 -49544872 - B3A SINE B2 -59 157 28 3 1132 376 143 57 0 chr12 71712822 71712892 -49544638 - URR1B DNA MER1_type 0 225 152 3 1132 280 331 29 82 chr12 71714920 71715127 -49542403 + MLT1H1-int LTR MaLR 1030 1225 -184 3 1132 276 325 41 122 chr12 71715281 71715502 -49542028 - ORR1E LTR MaLR -154 205 3 3 1132 804 107 412 6 chr12 71715585 71715745 -49541785 + URR1B DNA MER1_type 1 225 0 3 1132 301 363 71 22 chr12 71715818 71716001 -49541529 + MLT1H1 LTR MaLR 1 192 -363 3 1132 316 284 125 27 chr12 71716130 71716242 -49541288 + MLT1H1 LTR MaLR 357 479 -76 3 1132 727 144 82 22 chr12 71716394 71716529 -49541001 - B1_Mur4 SINE Alu -7 143 1 3 1132 212 356 53 27 chr12 71716561 71716711 -49540819 + MIR3 SINE MIR 43 196 -12 3 1132 1158 125 0 4 chr12 71717834 71718074 -49539456 + (TC)n Simple_repeat Simple_repeat 1 239 0 3 1132 308 147 13 0 chr12 71718759 71718834 -49538696 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 3 1132 1044 325 77 30 chr12 71719559 71720301 -49537229 + L1MC4a LINE L1 5334 6110 -1772 3 1132 570 29 0 0 chr12 71720306 71720374 -49537156 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 3 1132 713 211 29 6 chr12 71720429 71720601 -49536929 - MTD LTR MaLR -14 405 230 3 1132 542 269 11 46 chr12 71720633 71720808 -49536722 - MTD LTR MaLR -169 250 82 3 1132 711 219 48 89 chr12 71720964 71721235 -49536295 + L1MC4a LINE L1 6290 6549 -1333 3 1132 1216 60 34 4 chr12 71721239 71721478 -49536052 + (TAGA)n Simple_repeat Simple_repeat 1 246 0 3 1132 399 356 133 4 chr12 71721555 71721803 -49535727 + Arthur1B DNA Tip100 113 392 -833 3 1132 446 97 0 27 chr12 71722598 71722672 -49534858 + (AGGGGG)n Simple_repeat Simple_repeat 6 77 0 3 1132 210 356 73 24 chr12 71722698 71722862 -49534668 - MIRb SINE MIR -4 264 93 3 1132 281 323 77 43 chr12 71722863 71723070 -49534460 - MER20 DNA MER1_type -1 218 5 3 1132 219 265 22 67 chr12 71724086 71724175 -49533355 + CT-rich Low_complexity Low_complexity 1 85 0 3 1132 339 25 0 0 chr12 71724181 71724221 -49533309 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1132 202 253 180 22 chr12 71724504 71724593 -49532937 + L2c LINE L2 3275 3377 -10 3 1132 1014 75 7 0 chr12 71724807 71724953 -49532577 + URR1A DNA MER1_type 79 225 -1 3 1132 700 207 48 0 chr12 71726268 71726413 -49531117 - Lx7 LINE L1 -1177 6519 6368 3 1132 621 321 59 42 chr12 71726660 71727015 -49530515 + BGLII_B LTR ERVK 1 361 -80 3 1132 1151 209 147 15 chr12 71727951 71728180 -49529350 - MTD LTR MaLR -45 374 121 3 1132 303 28 0 0 chr12 71728180 71728216 -49529314 + (CAT)n Simple_repeat Simple_repeat 3 38 0 3 1132 1151 209 147 15 chr12 71728216 71728312 -49529218 - MTD LTR MaLR -299 120 7 3 1132 225 0 0 0 chr12 71728672 71728697 -49528833 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 3 1132 332 305 156 42 chr12 71728785 71729138 -49528392 - L1MEg LINE L1 -4718 1366 974 3 1132 786 170 0 0 chr12 71731376 71731523 -49526007 + CT-rich Low_complexity Low_complexity 1 147 0 3 1132 1207 169 250 81 chr12 71731556 71731683 -49525847 + MTC LTR MaLR 1 111 -310 3 1132 694 199 53 0 chr12 71731683 71731814 -49525716 - B1_Mus1 SINE Alu -10 138 1 3 1132 1207 169 250 81 chr12 71731814 71732046 -49525484 + MTC LTR MaLR 112 421 0 3 1132 185 283 0 0 chr12 71736343 71736389 -49521141 - L2b LINE L2 -1 3374 3329 3 1132 284 306 59 0 chr12 71736396 71736481 -49521049 - PB1D10 SINE Alu -25 92 3 3 1132 970 207 71 0 chr12 71736609 71736807 -49520723 - B3 SINE B2 0 216 5 3 1132 625 260 139 23 chr12 71736865 71737038 -49520492 + B3A SINE B2 1 193 -5 3 1132 198 0 0 0 chr12 71737050 71737072 -49520458 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1132 203 254 29 43 chr12 71738168 71738238 -49519292 + GA-rich Low_complexity Low_complexity 4 72 0 3 1132 233 323 20 29 chr12 71738324 71738426 -49519104 + MIR SINE MIR 18 118 -150 3 1132 398 268 31 0 chr12 71738837 71738934 -49518596 - PB1D10 SINE Alu -1 116 17 3 1132 295 279 0 44 chr12 71738867 71738957 -49518573 - ID_B1 SINE B4 -60 164 79 3 1132 911 232 57 69 chr12 71739291 71739780 -49517750 + RMER2 LTR ERV1 1 559 -8 3 1132 292 272 15 46 chr12 71739957 71740033 -49517497 + MT2A LTR ERVL 407 483 -50 3 1132 389 36 0 18 chr12 71740033 71740089 -49517441 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1132 420 20 0 0 chr12 71740089 71740137 -49517393 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1132 292 272 15 46 chr12 71740137 71740190 -49517340 + MT2A LTR ERVL 484 532 -1 3 1132 33 43 0 0 chr12 71740450 71740497 -49517033 + AT_rich Low_complexity Low_complexity 1 47 0 3 1132 1413 226 30 9 chr12 71740745 71741153 -49516377 + RLTR33 LTR ERVK 179 678 0 3 1132 570 51 0 0 chr12 71741428 71741506 -49516024 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1132 2521 83 6 0 chr12 71741811 71742136 -49515394 + ORR1A2 LTR MaLR 1 327 0 3 1132 8064 48 7 3 chr12 71742165 71743386 -49514144 - L1Md_F2 LINE L1 0 6582 5355 3 1132 6117 67 3 0 chr12 71743376 71744157 -49513373 + L1Md_F2 LINE L1 4583 5365 -518 3 1132 1418 80 11 21 chr12 71744161 71744352 -49513178 - B2_Mm2 SINE B2 -4 191 3 3 1132 595 301 75 13 chr12 71744358 71744490 -49513040 - L1M5 LINE L1 -356 5823 5683 3 1132 534 16 0 0 chr12 71744490 71744553 -49512977 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1132 595 301 75 13 chr12 71744553 71744726 -49512804 - L1M5 LINE L1 -497 5682 5499 3 1132 311 264 137 12 chr12 71744854 71745015 -49512515 - L1MC LINE L1 -2353 3793 3613 3 1132 526 217 23 15 chr12 71745183 71745314 -49512216 - Lx9 LINE L1 -158 7486 7355 3 1132 378 294 48 68 chr12 71745446 71745694 -49511836 - L1MD LINE L1 -2752 3394 3152 3 1132 320 304 43 0 chr12 71745737 71745875 -49511655 - L1M5 LINE L1 -3157 2989 2846 3 1132 1199 169 29 58 chr12 71745885 71746162 -49511368 + RMER10A LTR ERVL 2 270 -172 3 1132 789 179 0 0 chr12 71746169 71746453 -49511077 + (CA)n Simple_repeat Simple_repeat 1 284 0 3 1132 681 199 0 0 chr12 71746464 71746640 -49510890 + (CA)n Simple_repeat Simple_repeat 2 177 0 3 1132 520 168 16 0 chr12 71746662 71746787 -49510743 + (CA)n Simple_repeat Simple_repeat 2 128 0 3 1132 623 151 59 0 chr12 71746794 71746913 -49510617 + RMER10A LTR ERVL 310 435 -7 3 1132 813 187 0 0 chr12 71747026 71747160 -49510370 + B1_Mus1 SINE Alu 2 135 -13 3 1132 233 276 131 22 chr12 71747412 71747549 -49509981 - L1M5 LINE L1 -3603 2543 2392 3 1132 282 219 9 19 chr12 71748250 71748357 -49509173 + GA-rich Low_complexity Low_complexity 1 106 0 3 1132 235 287 112 71 chr12 71748360 71748529 -49509001 + HAL1 LINE L1 1250 1425 -1082 3 1132 187 324 54 0 chr12 71749758 71749832 -49507698 - MIR SINE MIR -21 241 164 3 1132 429 108 48 48 chr12 71753267 71753393 -49504137 + (CAGAGA)n Simple_repeat Simple_repeat 4 129 0 3 1132 467 261 102 6 chr12 71753814 71753980 -49503550 + B3A SINE B2 1 182 -16 3 1132 525 16 0 0 chr12 71753990 71754052 -49503478 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1132 1857 177 108 5 chr12 71755996 71756376 -49501154 - MTD LTR MaLR 0 419 1 3 1132 424 275 67 0 chr12 71756714 71756834 -49500696 + B1F2 SINE Alu 2 129 -20 3 1132 258 56 0 0 chr12 71756845 71756881 -49500649 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1132 1136 288 34 32 chr12 71756977 71757451 -49500079 - L1M2 LINE L1 -519 5778 5304 4 1132 192 77 0 0 chr12 71759035 71759061 -49498469 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1132 564 256 178 25 chr12 71759077 71759313 -49498217 - Lx8 LINE L1 -31 7442 7171 4 1132 405 0 0 0 chr12 71759861 71759906 -49497624 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1132 262 194 0 82 chr12 71759921 71759994 -49497536 + MT2B LTR ERVL 191 257 -344 4 1132 629 143 0 0 chr12 71759930 71760038 -49497492 + B1_Mur3 SINE Alu 41 148 -1 4 1132 591 117 0 35 chr12 71760050 71760165 -49497365 + GA-rich Low_complexity Low_complexity 1 111 0 4 1132 235 331 71 51 chr12 71760426 71760623 -49496907 - MLT1C LTR MaLR -2 465 265 4 1132 290 190 148 25 chr12 71760686 71760767 -49496763 - MLT1C LTR MaLR -324 143 53 4 1132 1425 122 51 0 chr12 71760768 71760982 -49496548 - URR1B DNA MER1_type 0 225 1 4 1132 2055 120 12 12 chr12 71762167 71762504 -49495026 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1132 56331 29 9 2 chr12 71762508 71768933 -49488597 - IAPEz-int LTR ERVK -3 6478 8 4 1132 2055 120 12 12 chr12 71768933 71769270 -49488260 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1132 532 120 238 71 chr12 71769711 71769837 -49487693 + B1_Mur4 SINE Alu 3 149 -1 4 1132 775 209 51 93 chr12 71769871 71770050 -49487480 + B3 SINE B2 6 165 -51 4 1132 519 78 0 0 chr12 71770050 71770127 -49487403 + (CATA)n Simple_repeat Simple_repeat 2 78 0 4 1132 775 209 51 93 chr12 71770127 71770163 -49487367 + B3 SINE B2 166 211 -5 4 1132 201 227 0 22 chr12 71770342 71770387 -49487143 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1132 180 0 0 0 chr12 71770390 71770410 -49487120 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1132 275 202 160 10 chr12 71770479 71770579 -49486951 + MER5A DNA MER1_type 51 165 -24 4 1132 438 183 152 9 chr12 71771507 71771612 -49485918 + MTD LTR MaLR 19 138 -281 4 1132 980 229 74 16 chr12 71772072 71772329 -49485201 + MTD LTR MaLR 135 406 -13 4 1132 25 0 0 0 chr12 71772451 71772476 -49485054 + AT_rich Low_complexity Low_complexity 1 25 0 4 1132 185 321 0 0 chr12 71772719 71772772 -49484758 - MIRb SINE MIR -152 116 64 4 1132 441 214 0 0 chr12 71774632 71774716 -49482814 + U6 snRNA snRNA 1 84 -23 4 1132 1109 105 0 6 chr12 71775604 71775776 -49481754 + (GGGA)n Simple_repeat Simple_repeat 3 173 0 4 1132 242 272 26 117 chr12 71777231 71777373 -49480157 + MLT1F1 LTR MaLR 139 266 -282 4 1132 313 351 44 0 chr12 71777694 71777808 -49479722 - MLT1H LTR MaLR -323 226 108 4 1132 453 36 0 0 chr12 71778099 71778154 -49479376 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 4 1132 640 282 7 0 chr12 71778159 71778308 -49479222 - Lx8 LINE L1 -142 7331 7182 4 1132 378 343 43 0 chr12 71778350 71778490 -49479040 - MLT1H-int LTR MaLR 0 1409 1264 4 1132 2424 142 6 0 chr12 71778537 71778902 -49478628 - ORR1B2 LTR MaLR 0 367 1 4 1132 639 314 118 50 chr12 71779056 71779320 -49478210 - MLT1H-int LTR MaLR -343 1146 741 4 1132 2506 103 185 0 chr12 71779320 71779688 -49477842 - RLTR10C LTR ERVK 0 436 1 4 1132 639 317 120 51 chr12 71779688 71779803 -49477727 - MLT1H-int LTR MaLR -633 856 645 4 1132 246 32 0 0 chr12 71779865 71779896 -49477634 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1132 293 264 16 0 chr12 71779900 71779968 -49477562 - ID2 SINE ID -82 70 2 4 1132 804 266 63 4 chr12 71779998 71780236 -49477294 - MER33 DNA MER1_type -67 257 6 4 1132 391 330 74 46 chr12 71780268 71780484 -49477046 - MLT1H-int LTR MaLR -807 602 381 4 1132 324 0 0 0 chr12 71780499 71780535 -49476995 + (TAG)n Simple_repeat Simple_repeat 3 38 0 4 1132 320 194 152 16 chr12 71781651 71781759 -49475771 - MIR SINE MIR -121 147 40 4 1132 926 127 13 0 chr12 71783156 71783313 -49474217 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 4 1132 956 88 52 0 chr12 71783313 71783449 -49474081 - B1_Mus1 SINE Alu 0 148 6 4 1132 621 131 8 0 chr12 71784349 71784471 -49473059 - Lx9 LINE L1 -2 7642 7520 4 1132 222 37 0 0 chr12 71784554 71784581 -49472949 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 4 1132 1347 72 0 0 chr12 71784581 71784761 -49472769 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 4 1132 1161 118 0 0 chr12 71784767 71784945 -49472585 + (CTTG)n Simple_repeat Simple_repeat 1 178 0 4 1132 545 205 85 23 chr12 71784950 71785080 -49472450 - B1_Mur3 SINE Alu -10 139 2 4 1132 1815 180 72 57 chr12 71785671 71786072 -49471458 - MTD LTR MaLR -1 418 12 4 1132 654 224 63 9 chr12 71788760 71788912 -49468618 + B3A SINE B2 6 169 -47 4 1132 990 118 0 0 chr12 71788913 71789074 -49468456 + (CA)n Simple_repeat Simple_repeat 1 161 0 4 1132 303 335 180 50 chr12 71789085 71789408 -49468122 + MARNA DNA Mariner 63 427 -159 4 1132 315 0 0 0 chr12 71789775 71789810 -49467720 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1132 585 80 0 0 chr12 71793381 71793469 -49464061 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 1132 575 187 114 0 chr12 71794621 71794744 -49462786 + B1_Mm SINE Alu 9 145 -2 4 1132 1188 73 82 28 chr12 71794768 71794950 -49462580 + B2_Mm2 SINE B2 1 192 -3 4 1132 1086 189 19 42 chr12 71795523 71795739 -49461791 + B3 SINE B2 1 211 -5 4 1132 292 253 0 60 chr12 71795878 71795962 -49461568 + MIRc SINE MIR 163 241 -27 4 1132 1351 279 38 46 chr12 71797063 71797858 -49459672 + L1ME2 LINE L1 5156 5944 -220 4 1132 585 284 47 27 chr12 71797862 71798045 -49459485 + B3A SINE B2 21 188 -28 4 1132 215 172 29 57 chr12 71798051 71798156 -49459374 + (CAGAGA)n Simple_repeat Simple_repeat 3 104 0 4 1132 948 145 0 0 chr12 71798183 71798342 -49459188 + (GA)n Simple_repeat Simple_repeat 2 160 0 4 1132 473 296 51 51 chr12 71798950 71799146 -49458384 - B3A SINE B2 -1 197 2 4 1132 342 0 0 0 chr12 71800790 71800828 -49456702 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1132 753 192 101 11 chr12 71800831 71801010 -49456520 + B3A SINE B2 1 195 -3 4 1132 495 307 121 22 chr12 71802081 71802304 -49455226 + LTR16C LTR ERVL 4 248 -241 4 1132 185 273 0 0 chr12 71803855 71803899 -49453631 + MIR SINE MIR 86 129 -79 4 1132 548 257 132 0 chr12 71804398 71804550 -49452980 - MTEb LTR MaLR 0 379 208 4 1132 377 231 0 0 chr12 71804546 71804611 -49452919 - B1_Mur4 SINE Alu -83 67 3 4 1132 286 282 0 40 chr12 71804547 71804621 -49452909 - B4 SINE B4 -142 150 80 4 1132 970 235 53 19 chr12 71804644 71804909 -49452621 + B4A SINE B4 4 277 -15 4 1132 264 299 138 7 chr12 71805061 71805199 -49452331 + MER63C DNA AcHobo 582 737 -193 4 1132 232 161 49 82 chr12 71805436 71805497 -49452033 + MER63C DNA AcHobo 804 862 -68 4 1132 483 244 21 62 chr12 71807083 71807108 -49450422 + ID_B1 SINE B4 78 215 -9 4 1132 793 101 5 0 chr12 71807108 71807227 -49450303 + B1_Mus2 SINE Alu 17 140 -9 4 1132 494 25 12 36 chr12 71807229 71807312 -49450218 + (CAAAA)n Simple_repeat Simple_repeat 2 82 0 4 1132 431 104 30 0 chr12 71807319 71807386 -49450144 + B1_Mur1 SINE Alu 81 149 0 4 1132 1387 297 123 22 chr12 71808969 71809733 -49447797 - L1MB8 LINE L1 -5 6173 5333 4 1132 202 182 0 0 chr12 71809765 71809798 -49447732 + G-rich Low_complexity Low_complexity 1 33 0 4 1132 508 297 177 21 chr12 71809804 71810041 -49447489 - B4 SINE B4 -18 274 1 4 1132 834 237 250 12 chr12 71810188 71810669 -49446861 - L1MC1 LINE L1 0 6333 5739 4 1132 225 0 0 0 chr12 71810669 71810694 -49446836 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 1132 402 79 0 0 chr12 71810733 71810796 -49446734 + (TTGG)n Simple_repeat Simple_repeat 2 64 0 4 1132 813 162 66 0 chr12 71810800 71810936 -49446594 - B1_Mur4 SINE Alu 0 150 6 4 1132 381 222 69 181 chr12 71810805 71811009 -49446521 - B4 SINE B4 -71 221 41 4 1132 1039 238 124 26 chr12 71811127 71811633 -49445897 - L1MC1 LINE L1 -813 5531 4972 4 1132 1221 132 5 16 chr12 71811678 71811871 -49445659 - B2_Mm2 SINE B2 0 195 5 4 1132 975 272 148 60 chr12 71811988 71812834 -49444696 - L1MB8 LINE L1 -922 5224 4305 4 1132 319 257 96 51 chr12 71812892 71813048 -49444482 - HAL1-3A_ME LINE L1 -413 2445 2283 4 1132 191 36 0 35 chr12 71814799 71814828 -49442702 + (GGTTG)n Simple_repeat Simple_repeat 1 28 0 4 1132 591 279 17 47 chr12 71815836 71816069 -49441461 - L1MB5 LINE L1 -17 6157 5932 4 1132 360 59 0 42 chr12 71816106 71816177 -49441353 + (TGG)n Simple_repeat Simple_repeat 3 70 0 4 1132 455 264 73 52 chr12 71816178 71816314 -49441216 - B4A SINE B4 -12 280 142 4 1132 413 270 169 58 chr12 71816485 71816811 -49440719 - L1MB5 LINE L1 -477 5697 5336 4 1132 1853 142 93 33 chr12 71816944 71817278 -49440252 + ORR1B1 LTR MaLR 41 394 0 4 1132 311 294 12 12 chr12 71817279 71817365 -49440165 - PB1D10 SINE Alu -31 86 1 4 1132 1264 108 0 16 chr12 71817374 71817400 -49440130 - B2_Mm2 SINE B2 -9 186 162 4 1132 288 0 0 0 chr12 71817400 71817432 -49440098 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 4 1132 1264 108 0 16 chr12 71817432 71817593 -49439937 - B2_Mm2 SINE B2 -34 161 2 4 1132 266 279 60 0 chr12 71817593 71817703 -49439827 - L1MB5 LINE L1 -842 5304 5182 4 1132 301 136 30 0 chr12 71817703 71817769 -49439761 + CT-rich Low_complexity Low_complexity 4 71 0 4 1132 288 0 0 0 chr12 71818347 71818379 -49439151 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 4 1132 841 158 7 14 chr12 71819234 71819375 -49438155 + B1_Mur4 SINE Alu 5 144 -6 4 1132 250 262 0 0 chr12 71820771 71820832 -49436698 + BC1_Mm scRNA scRNA 15 75 -77 4 1132 542 15 15 0 chr12 71821032 71821099 -49436431 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1132 216 0 0 0 chr12 71821930 71821954 -49435576 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1132 404 294 263 4 chr12 71822466 71822698 -49434832 + B4A SINE B4 1 292 0 4 1132 416 211 0 0 chr12 71822779 71822850 -49434680 + ID4_ SINE ID 3 73 -10 4 1132 1378 75 16 36 chr12 71822911 71823105 -49434425 + B2_Mm2 SINE B2 2 191 -4 4 1132 484 298 53 0 chr12 71823657 71823808 -49433722 + MER5A1 DNA MER1_type 2 160 -6 4 1132 1390 168 137 56 chr12 71824055 71824414 -49433116 - MTD LTR MaLR -14 405 18 4 1132 484 263 60 2 chr12 71825125 71825271 -49432259 + ID_B1 SINE B4 43 195 -29 4 1132 473 274 8 0 chr12 71825268 71825385 -49432145 - B4A SINE B4 -172 120 3 4 1133 25 0 0 0 chr12 71827485 71827510 -49430020 + AT_rich Low_complexity Low_complexity 1 25 0 4 1133 660 296 133 59 chr12 71828169 71828492 -49429038 - ORR1E LTR MaLR -10 349 3 5 1133 190 171 0 89 chr12 71828504 71828549 -49428981 - L2c LINE L2 -70 3317 3277 5 1133 786 347 98 54 chr12 71828619 71829106 -49428424 + LTR16E2 LTR ERVL 14 510 -28 5 1133 546 269 30 8 chr12 71829155 71829286 -49428244 + ID_B1 SINE B4 86 219 -5 5 1133 542 272 206 21 chr12 71829389 71829622 -49427908 - B4 SINE B4 -14 278 3 5 1133 250 400 21 0 chr12 71829796 71829891 -49427639 + MLT1L LTR MaLR 180 276 -334 5 1133 1297 67 77 11 chr12 71830098 71830279 -49427251 - B2_Mm2 SINE B2 -1 194 2 5 1133 984 299 107 56 chr12 71830632 71831435 -49426095 + L1MC3 LINE L1 6756 7599 -186 5 1133 314 346 117 54 chr12 71831462 71831689 -49425841 - ORR1E LTR MaLR -5 354 105 5 1133 1298 129 42 14 chr12 71831689 71831902 -49425628 + URR1B DNA MER1_type 5 223 -2 5 1133 314 346 117 54 chr12 71831902 71832007 -49425523 - ORR1E LTR MaLR -255 104 1 5 1133 211 275 0 0 chr12 71832292 71832348 -49425182 - L2c LINE L2 -2 3424 3337 5 1133 353 288 167 11 chr12 71833607 71833877 -49423653 + L1MA8 LINE L1 5703 6014 -298 5 1133 780 146 29 0 chr12 71833885 71834022 -49423508 - B1_Mur1 SINE Alu 0 149 9 5 1133 677 220 135 16 chr12 71834030 71834275 -49423255 + L1MA8 LINE L1 6005 6278 -13 5 1133 433 365 31 0 chr12 71834301 71834493 -49423037 + Lx8 LINE L1 7130 7327 -146 5 1133 333 0 0 0 chr12 71834493 71834530 -49423000 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1133 710 155 14 65 chr12 71834692 71834830 -49422700 + B1_Mus1 SINE Alu 5 135 -13 5 1133 257 288 204 29 chr12 71834845 71835017 -49422513 + B4A SINE B4 7 208 -84 5 1133 224 103 16 49 chr12 71836096 71836157 -49421373 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 1133 678 255 150 0 chr12 71836241 71836572 -49420958 - L1MA4 LINE L1 -368 5932 5536 5 1133 1763 282 116 51 chr12 71836626 71837206 -49420324 + L1M2 LINE L1 2588 3184 -2959 5 1133 1052 106 0 0 chr12 71837206 71837347 -49420183 - B1_Mur4 SINE Alu -9 141 1 5 1133 1763 282 116 51 chr12 71837347 71838031 -49419499 + L1M2 LINE L1 3185 3934 -2209 5 1133 583 257 46 41 chr12 71838193 71838388 -49419142 + B3A SINE B2 3 198 0 5 1133 204 40 0 0 chr12 71838408 71838433 -49419097 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1133 593 175 0 0 chr12 71838448 71838551 -49418979 + B1_Mur1 SINE Alu 46 148 -1 5 1133 469 349 36 36 chr12 71838628 71838851 -49418679 - MLT1G3 LTR MaLR -30 565 343 5 1133 1290 260 38 14 chr12 71839554 71839920 -49417610 + MTE2b LTR MaLR 1 375 -4 5 1133 429 90 0 0 chr12 71842330 71842397 -49415133 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1133 1104 307 38 26 chr12 71842648 71842989 -49414541 + MTE2a LTR MaLR 1 345 -34 5 1133 217 176 53 26 chr12 71843136 71843212 -49414318 + (TTATA)n Simple_repeat Simple_repeat 2 79 0 5 1133 22 56 0 0 chr12 71843712 71843748 -49413782 + AT_rich Low_complexity Low_complexity 1 36 0 5 1133 285 29 0 0 chr12 71843768 71843802 -49413728 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1133 310 288 76 9 chr12 71845107 71845212 -49412318 - PB1D10 SINE Alu -1 116 5 5 1133 247 225 13 101 chr12 71845239 71845318 -49412212 - ID4_ SINE ID -9 74 3 5 1133 1029 230 38 5 chr12 71845366 71845576 -49411954 - ID_B1 SINE B4 -1 223 7 5 1133 789 279 58 35 chr12 71846425 71846685 -49410845 + B4A SINE B4 2 267 -25 5 1133 306 50 0 0 chr12 71846712 71846752 -49410778 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1133 405 0 0 0 chr12 71846752 71846796 -49410734 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1133 351 216 17 40 chr12 71847317 71847416 -49410114 + PB1D10 SINE Alu 16 111 -6 5 1133 24 0 0 0 chr12 71847862 71847886 -49409644 + AT_rich Low_complexity Low_complexity 1 24 0 5 1133 708 272 101 43 chr12 71848021 71848278 -49409252 + B4A SINE B4 5 276 -16 5 1133 726 109 0 0 chr12 71848287 71848397 -49409133 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 5 1133 279 0 0 0 chr12 71848834 71848865 -49408665 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1133 369 0 0 0 chr12 71849165 71849206 -49408324 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1133 332 325 343 37 chr12 71849293 71849458 -49408072 + B4A SINE B4 1 208 -84 5 1133 2871 39 0 3 chr12 71849458 71849796 -49407734 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1133 332 214 60 110 chr12 71849796 71849867 -49407663 + B4A SINE B4 209 284 -8 5 1133 242 245 120 19 chr12 71849894 71850002 -49407528 - L1MCa LINE L1 -4550 1958 1840 5 1133 206 304 98 0 chr12 71850002 71850114 -49407416 + MIR SINE MIR 119 241 -21 5 1133 328 349 152 40 chr12 71850123 71850420 -49407110 - ORR1D2 LTR MaLR 0 370 47 5 1133 441 0 0 0 chr12 71850420 71850469 -49407061 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1133 328 349 152 40 chr12 71850469 71850499 -49407031 - ORR1D2 LTR MaLR -324 46 8 5 1133 303 140 0 0 chr12 71852451 71852501 -49405029 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 5 1133 251 182 146 61 chr12 71852530 71852612 -49404918 + MT2B LTR ERVL 177 265 -336 5 1133 519 163 20 10 chr12 71852545 71852644 -49404886 + B1_Mur3 SINE Alu 47 146 -3 5 1133 1469 134 0 26 chr12 71854349 71854579 -49402951 - URR1B DNA MER1_type -1 224 1 5 1133 23 33 0 0 chr12 71854728 71854758 -49402772 + AT_rich Low_complexity Low_complexity 1 30 0 5 1133 739 242 181 0 chr12 71854761 71854943 -49402587 + B3 SINE B2 2 216 0 5 1133 1054 273 74 64 chr12 71855303 71855352 -49402178 - RLTR11A2 LTR ERVK 0 527 458 5 1133 204 40 0 0 chr12 71855352 71855377 -49402153 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1133 1054 273 74 64 chr12 71855377 71855840 -49401690 - RLTR11A2 LTR ERVK -70 457 11 5 1133 1153 176 54 0 chr12 71857980 71858185 -49399345 - B3 SINE B2 0 216 1 5 1133 261 0 0 0 chr12 71858318 71858347 -49399183 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1133 699 270 73 0 chr12 71858375 71858553 -49398977 - B4 SINE B4 -2 290 100 5 1133 402 309 169 0 chr12 71858600 71858736 -49398794 - RSINE1 SINE B4 -4 161 3 5 1133 631 151 158 8 chr12 71858840 71858967 -49398563 - B1_Mus1 SINE Alu 0 148 3 5 1133 550 286 67 0 chr12 71859982 71860167 -49397363 - MIRb SINE MIR -38 230 28 5 1133 210 105 0 0 chr12 71862694 71862732 -49394798 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1133 1876 126 30 0 chr12 71862764 71863065 -49394465 - ORR1A4 LTR MaLR 0 329 20 5 1133 706 168 0 8 chr12 71863053 71863179 -49394351 - B1_Mus1 SINE Alu -23 125 1 5 1133 234 296 111 0 chr12 71863213 71863321 -49394209 + PB1 SINE Alu 1 120 -7 5 1133 259 278 94 42 chr12 71863941 71864155 -49393375 - MIR SINE MIR -25 243 23 5 1133 731 151 34 61 chr12 71865688 71865836 -49391694 + B1_Mur1 SINE Alu 1 144 -5 5 1133 981 168 0 0 chr12 71865837 71866016 -49391514 + GA-rich Low_complexity Low_complexity 2 180 0 5 1133 623 125 10 0 chr12 71866003 71866107 -49391423 + (GAAAA)n Simple_repeat Simple_repeat 4 108 0 5 1133 354 222 0 0 chr12 71867725 71867815 -49389715 + (ATG)n Simple_repeat Simple_repeat 2 91 0 5 1133 414 0 0 0 chr12 71868595 71868641 -49388889 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1133 531 0 0 0 chr12 71868641 71868699 -49388831 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1133 789 181 7 7 chr12 71870032 71870177 -49387353 + B1_Mm SINE Alu 2 146 -1 5 1133 210 37 0 0 chr12 71870331 71870358 -49387172 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 5 1133 884 137 36 0 chr12 71870406 71870545 -49386985 - B1_Mus2 SINE Alu -2 145 2 5 1133 608 308 87 20 chr12 71870966 71871264 -49386266 + Tigger6a DNA MER2_type 163 480 -603 5 1133 3088 58 18 13 chr12 71871276 71871674 -49385856 - MTB LTR MaLR 0 400 1 5 1133 300 326 65 0 chr12 71871692 71871830 -49385700 + Tigger6a DNA MER2_type 937 1083 0 5 1133 249 57 0 0 chr12 71872326 71872361 -49385169 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1133 876 88 0 0 chr12 71872361 71872486 -49385044 - B1_Mus2 SINE Alu -22 125 1 5 1133 370 229 0 110 chr12 71872384 71872502 -49385028 - MT2B LTR ERVL -344 257 153 5 1133 21 0 0 0 chr12 71872727 71872748 -49384782 + AT_rich Low_complexity Low_complexity 1 21 0 5 1133 242 151 38 0 chr12 71874311 71874364 -49383166 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 5 1133 206 192 0 19 chr12 71875383 71875436 -49382094 + GA-rich Low_complexity Low_complexity 2 53 0 5 1133 479 184 75 60 chr12 71876310 71876443 -49381087 + B1_Mus1 SINE Alu 13 147 -1 5 1133 236 296 88 7 chr12 71877119 71877255 -49380275 + MIR SINE MIR 91 237 -25 5 1133 25 51 0 0 chr12 71878944 71878983 -49378547 + AT_rich Low_complexity Low_complexity 1 39 0 5 1133 384 77 0 0 chr12 71880566 71880618 -49376912 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1133 940 160 0 7 chr12 71880622 71880773 -49376757 - B1_Mur4 SINE Alu 0 150 1 5 1133 656 174 76 42 chr12 71881100 71881244 -49376286 - B1_Mur1 SINE Alu 0 149 1 5 1133 723 292 66 18 chr12 71881547 71881833 -49375697 + MER58B DNA MER1_type 42 341 0 5 1133 550 305 105 45 chr12 71882084 71882417 -49375113 + MLT1A0 LTR MaLR 11 363 -2 5 1133 259 345 0 22 chr12 71883671 71883852 -49373678 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1133 182 37 37 0 chr12 71884482 71884509 -49373021 + (CCCCCG)n Simple_repeat Simple_repeat 2 29 0 5 1133 460 274 100 58 chr12 71885686 71885926 -49371604 - MER44A DNA MER2_type -84 255 6 5 1133 182 370 33 16 chr12 71886265 71886386 -49371144 - L2c LINE L2 -1 3386 3264 5 1133 315 0 0 0 chr12 71887265 71887300 -49370230 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1133 1166 44 0 0 chr12 71887300 71887436 -49370094 - B1_Mus2 SINE Alu -11 136 1 5 1133 32 0 0 0 chr12 71887884 71887916 -49369614 + AT_rich Low_complexity Low_complexity 1 32 0 5 1133 373 157 45 0 chr12 71887953 71888042 -49369488 + C-rich Low_complexity Low_complexity 6 98 0 6 1133 298 271 0 0 chr12 71888209 71888268 -49369262 + ID2 SINE ID 9 67 -16 6 1133 1607 41 0 15 chr12 71888271 71888467 -49369063 - B2_Mm1a SINE B2 0 193 1 6 1133 342 0 0 0 chr12 71888550 71888588 -49368942 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1133 642 222 200 22 chr12 71888717 71888897 -49368633 - B3 SINE B2 0 216 5 6 1133 432 0 0 0 chr12 71888908 71888956 -49368574 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1133 712 120 50 33 chr12 71888968 71889089 -49368441 - B1_Mur4 SINE Alu -26 124 2 6 1133 289 355 56 21 chr12 71890025 71890169 -49367361 - MER5B DNA MER1_type -27 151 3 6 1133 373 250 25 16 chr12 71890184 71890306 -49367224 - MER5A1 DNA MER1_type -19 147 25 6 1133 432 236 19 19 chr12 71890493 71890601 -49366929 + PB1D10 SINE Alu 9 116 -1 6 1133 607 301 82 0 chr12 71890729 71890912 -49366618 - B3A SINE B2 0 198 1 6 1133 3038 81 10 2 chr12 71891155 71891552 -49365978 - MTB LTR MaLR 0 400 1 6 1133 260 307 89 41 chr12 71891773 71891919 -49365611 + MIRb SINE MIR 66 218 -50 6 1133 331 302 89 43 chr12 71892995 71893275 -49364255 - MER33 DNA MER1_type 0 324 32 6 1133 268 265 35 46 chr12 71894745 71894832 -49362698 - L2c LINE L2 -10 3377 3292 6 1133 297 0 0 0 chr12 71895165 71895198 -49362332 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 6 1133 1085 123 6 0 chr12 71895198 71895377 -49362153 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 6 1133 459 0 0 0 chr12 71895387 71895438 -49362092 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 6 1133 284 250 49 14 chr12 71896682 71896710 -49360820 + ORR1B1-int LTR MaLR 613 645 -864 6 1133 822 125 0 0 chr12 71896710 71896830 -49360700 + B1_Mur3 SINE Alu 1 120 -29 6 1133 205 209 141 56 chr12 71896867 71896938 -49360592 + MIR SINE MIR 156 232 -30 6 1133 352 213 110 68 chr12 71896963 71897109 -49360421 + L1MA5 LINE L1 6143 6294 -6 6 1133 1019 219 29 5 chr12 71897327 71897533 -49359997 - B3 SINE B2 -1 215 5 6 1133 331 248 40 0 chr12 71898076 71898177 -49359353 + ID4 SINE ID 1 105 -47 6 1133 354 45 0 0 chr12 71898850 71898894 -49358636 + (GGGGA)n Simple_repeat Simple_repeat 3 46 0 6 1133 228 311 0 16 chr12 71899457 71899519 -49358011 + MIR3 SINE MIR 105 165 -43 6 1133 261 0 0 0 chr12 71901008 71901037 -49356493 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1133 774 255 10 14 chr12 71901663 71901866 -49355664 + B3A SINE B2 10 213 -3 6 1133 511 190 13 7 chr12 71901879 71901987 -49355543 + B1_Mus2 SINE Alu 9 147 0 6 1133 225 108 0 0 chr12 71903085 71903122 -49354408 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 6 1133 339 146 0 0 chr12 71903147 71903202 -49354328 - HAL1-3A_ME LINE L1 -838 2020 1966 6 1133 1226 90 6 0 chr12 71903955 71904133 -49353397 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 6 1133 192 255 64 0 chr12 71904553 71904600 -49352930 + L2c LINE L2 3280 3329 -58 6 1133 341 299 138 22 chr12 71905781 71905962 -49351568 + MIRc SINE MIR 3 204 -64 6 1133 348 250 25 0 chr12 71906187 71906267 -49351263 + ID4 SINE ID 2 83 0 6 1133 327 81 48 48 chr12 71906336 71906440 -49351090 + T-rich Low_complexity Low_complexity 1 104 0 6 1133 1106 49 21 7 chr12 71906440 71906584 -49350946 - B1_Mm SINE Alu 0 147 2 6 1133 603 207 0 25 chr12 71906630 71906749 -49350781 + PB1D9 SINE Alu 5 120 0 6 1133 864 148 21 0 chr12 71907838 71907980 -49349550 + B1_Mur4 SINE Alu 1 145 -5 6 1133 525 217 0 0 chr12 71907982 71908111 -49349419 + GA-rich Low_complexity Low_complexity 2 130 0 6 1133 251 229 71 0 chr12 71908174 71908244 -49349286 - L1M4 LINE L1 -655 5529 5455 6 1133 405 288 64 7 chr12 71908554 71908694 -49348836 - MIR SINE MIR -81 181 34 6 1133 23 0 0 0 chr12 71910313 71910336 -49347194 + AT_rich Low_complexity Low_complexity 1 23 0 6 1133 180 0 0 0 chr12 71911483 71911503 -49346027 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1133 507 237 7 48 chr12 71912342 71912488 -49345042 + ID_B1 SINE B4 84 223 -1 6 1133 576 29 0 0 chr12 71913696 71913766 -49343764 + (CCA)n Simple_repeat Simple_repeat 3 72 0 6 1133 29 0 0 0 chr12 71914618 71914647 -49342883 + AT_rich Low_complexity Low_complexity 1 29 0 6 1133 180 0 0 0 chr12 71915040 71915060 -49342470 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1133 288 0 0 0 chr12 71915844 71915876 -49341654 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1133 1226 35 0 0 chr12 71915878 71916020 -49341510 - B1_Mm SINE Alu -4 143 2 6 1133 289 294 0 0 chr12 71916175 71916243 -49341287 + ID4_ SINE ID 3 70 -13 6 1133 249 341 12 0 chr12 71916243 71916257 -49341273 + ID SINE ID 3 85 -139 6 1133 356 299 33 39 chr12 71916506 71916659 -49340871 - MER20 DNA MER1_type -43 176 25 6 1133 181 351 13 0 chr12 71917266 71917343 -49340187 + MIR SINE MIR 130 207 -55 6 1133 368 348 0 0 chr12 71917459 71917571 -49339959 + G-rich Low_complexity Low_complexity 3 114 0 6 1133 223 242 154 25 chr12 71918557 71918675 -49338855 - L2a LINE L2 -36 3390 3238 6 1133 249 271 135 0 chr12 71918865 71918961 -49338569 + ID_B1 SINE B4 73 181 -43 6 1133 28 86 0 0 chr12 71920803 71920873 -49336657 + AT_rich Low_complexity Low_complexity 1 70 0 6 1133 339 261 17 43 chr12 71921298 71921414 -49336116 + PB1D10 SINE Alu 1 113 -4 6 1133 244 312 151 61 chr12 71921539 71921581 -49335949 - Tigger5 DNA MER2_type -2174 232 188 6 1133 423 0 0 0 chr12 71921581 71921628 -49335902 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1133 244 312 151 61 chr12 71921628 71921797 -49335733 - Tigger5 DNA MER2_type -2219 187 3 6 1133 21 36 0 0 chr12 71922468 71922496 -49335034 + AT_rich Low_complexity Low_complexity 1 28 0 6 1133 257 312 140 0 chr12 71922551 71922644 -49334886 + PB1D9 SINE Alu 1 106 -14 6 1133 384 22 0 0 chr12 71922645 71922690 -49334840 + (GAAA)n Simple_repeat Simple_repeat 4 48 0 6 1133 746 109 0 8 chr12 71922692 71922812 -49334718 + (GGGA)n Simple_repeat Simple_repeat 3 121 0 6 1133 267 31 0 0 chr12 71923484 71923516 -49334014 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 6 1133 964 105 0 47 chr12 71924869 71925019 -49332511 - B1_Mus2 SINE Alu 0 147 5 6 1133 1131 178 171 43 chr12 71925029 71925381 -49332149 + MTD LTR MaLR 4 400 -19 6 1133 225 65 0 0 chr12 71926246 71926277 -49331253 + (CGGGG)n Simple_repeat Simple_repeat 5 35 0 6 1133 205 172 40 79 chr12 71926348 71926449 -49331081 + (CGGGG)n Simple_repeat Simple_repeat 3 99 0 6 1133 24 32 0 0 chr12 71926755 71926786 -49330744 + GC_rich Low_complexity Low_complexity 1 31 0 6 1133 234 91 0 0 chr12 71929367 71929400 -49328130 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 6 1133 552 197 21 49 chr12 71929570 71929714 -49327816 - B1_Mm SINE Alu -6 141 2 6 1133 219 143 17 35 chr12 71929814 71929864 -49327666 + T-rich Low_complexity Low_complexity 11 59 0 6 1133 769 141 46 66 chr12 71929864 71930016 -49327514 - B1_Mur1 SINE Alu 0 149 1 6 1133 799 179 196 27 chr12 71932552 71932736 -49324794 - B3 SINE B2 0 216 2 6 1133 1323 47 0 0 chr12 71933009 71933220 -49324310 + (CA)n Simple_repeat Simple_repeat 1 211 0 6 1133 720 0 0 0 chr12 71933554 71933634 -49323896 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 6 1133 568 148 60 17 chr12 71933640 71933757 -49323773 - B1_Mus1 SINE Alu -26 122 1 6 1133 264 241 126 25 chr12 71933963 71934082 -49323448 - L1MA4A LINE L1 -370 5930 5800 6 1133 270 0 0 0 chr12 71934119 71934149 -49323381 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 6 1133 328 340 78 34 chr12 71934238 71934442 -49323088 + MIRb SINE MIR 36 248 -20 6 1133 358 260 135 35 chr12 71936139 71936398 -49321132 - L2 LINE L2 -421 2998 2714 6 1133 4164 51 9 6 chr12 71936967 71937497 -49320033 + L1_Mus2 LINE L1 6035 6566 0 6 1133 319 214 0 67 chr12 71939029 71939119 -49318411 + MER102a DNA MER1_type 79 162 -168 6 1133 1414 69 26 11 chr12 71939864 71940055 -49317475 - B2_Mm2 SINE B2 0 195 2 6 1133 342 123 0 0 chr12 71940142 71940199 -49317331 + (ATTG)n Simple_repeat Simple_repeat 1 57 0 6 1133 714 115 0 0 chr12 71940201 71940305 -49317225 - B1_Mus2 SINE Alu -7 140 37 6 1133 351 194 0 0 chr12 71940320 71940387 -49317143 - B1_Mus2 SINE Alu 0 147 81 6 1133 552 30 0 0 chr12 71940399 71940465 -49317065 + (TTTTC)n Simple_repeat Simple_repeat 2 67 0 6 1133 460 216 41 0 chr12 71940465 71940562 -49316968 - B1_Mur1 SINE Alu -11 138 38 6 1133 773 134 7 7 chr12 71940559 71940694 -49316836 + B1_Mus1 SINE Alu 14 148 0 6 1133 234 0 0 0 chr12 71941497 71941523 -49316007 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1133 1750 140 106 0 chr12 71941882 71942175 -49315355 - ORR1A2 LTR MaLR -3 324 1 6 1133 1620 109 8 0 chr12 71942866 71943114 -49314416 - RMER15 LTR ERVL 0 575 326 6 1133 279 0 0 0 chr12 71943410 71943441 -49314089 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1133 563 40 14 0 chr12 71943441 71943515 -49314015 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1133 333 281 39 10 chr12 71943521 71943625 -49313905 - B1F1 SINE Alu -10 139 33 6 1133 315 0 0 0 chr12 71943674 71943709 -49313821 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1133 4341 214 79 82 chr12 71944359 71945684 -49311846 - RMER12 LTR ERVK 0 1322 1 6 1133 435 265 53 7 chr12 71945926 71946078 -49311452 - L1ME1 LINE L1 -39 6140 5982 7 1133 301 171 128 47 chr12 71946285 71946371 -49311159 - L1ME1 LINE L1 -392 5770 5678 7 1133 529 263 149 0 chr12 71946396 71946590 -49310940 - L1ME1 LINE L1 -573 5606 5384 7 1133 235 287 57 51 chr12 71946917 71947093 -49310437 - L1M2 LINE L1 -1200 4943 4767 7 1133 307 272 102 75 chr12 71947093 71947240 -49310290 - L1ME1 LINE L1 -1344 4802 4652 7 1133 277 242 75 63 chr12 71947259 71947418 -49310112 - L1MC4a LINE L1 -2 7880 7720 7 1133 1062 116 14 0 chr12 71947490 71947637 -49309893 - B1_Mur3 SINE Alu 0 149 1 7 1133 516 285 96 40 chr12 71947649 71948047 -49309483 - L1ME1 LINE L1 -2370 3776 3357 7 1133 207 0 0 0 chr12 71948578 71948601 -49308929 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1133 708 120 9 18 chr12 71949230 71949340 -49308190 - PB1D9 SINE Alu -10 110 2 7 1133 27 0 0 0 chr12 71949349 71949376 -49308154 + AT_rich Low_complexity Low_complexity 1 27 0 7 1133 410 241 86 46 chr12 71949376 71949528 -49308002 - RSINE1 SINE B4 -2 163 6 7 1133 795 210 0 0 chr12 71949547 71949685 -49307845 - B1_Mur2 SINE Alu 0 149 12 7 1133 271 200 13 114 chr12 71949614 71949693 -49307837 - MT2B LTR ERVL -364 237 167 7 1133 316 294 108 34 chr12 71951906 71952054 -49305476 - L1ME3B LINE L1 -268 5972 5814 7 1133 315 0 0 0 chr12 71952286 71952321 -49305209 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1133 227 239 29 146 chr12 71953018 71953121 -49304409 - MIR SINE MIR -144 118 28 7 1133 232 177 0 102 chr12 71953213 71953301 -49304229 + T-rich Low_complexity Low_complexity 1 79 0 7 1133 1137 74 0 33 chr12 71953321 71953474 -49304056 - B1_Mus1 SINE Alu 0 148 1 7 1133 200 200 0 0 chr12 71953656 71953691 -49303839 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1133 613 215 7 75 chr12 71953692 71953838 -49303692 - B1F SINE Alu -1 148 13 7 1133 273 98 0 0 chr12 71953880 71953921 -49303609 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1133 187 266 29 59 chr12 71954186 71954254 -49303276 - L2b LINE L2 -274 3101 3036 7 1133 2988 36 103 0 chr12 71954671 71955030 -49302500 - MTA_Mm LTR MaLR 0 396 1 7 1133 279 79 0 0 chr12 71956761 71956799 -49300731 + (CAGG)n Simple_repeat Simple_repeat 1 38 0 7 1133 198 0 0 0 chr12 71957124 71957146 -49300384 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 7 1134 815 272 15 0 chr12 71958632 71958834 -49298696 + B3 SINE B2 2 206 -10 7 1134 404 256 100 14 chr12 71959279 71959421 -49298109 + B3A SINE B2 51 198 0 7 1134 396 309 67 22 chr12 71959450 71959626 -49297904 + MER20 DNA MER1_type 18 201 -18 7 1134 374 296 217 65 chr12 71959626 71959913 -49297617 - MTEa LTR MaLR 0 379 49 7 1134 208 318 0 60 chr12 71960275 71960342 -49297188 + L2b LINE L2 3297 3359 -16 7 1134 1211 127 90 15 chr12 71960723 71960923 -49296607 - URR1A DNA MER1_type -11 215 1 7 1134 1093 104 0 31 chr12 71961962 71962121 -49295409 + B2_Mm2 SINE B2 1 154 -41 7 1134 414 0 0 0 chr12 71962122 71962168 -49295362 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 7 1134 258 221 143 0 chr12 71962616 71962693 -49294837 + MER103 DNA DNA 2 89 -77 7 1134 207 0 0 0 chr12 71962704 71962727 -49294803 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1134 668 239 0 0 chr12 71962727 71962861 -49294669 - B1_Mus1 SINE Alu -10 138 5 7 1134 345 236 64 36 chr12 71962956 71963066 -49294464 - PB1D7 SINE Alu -7 113 1 7 1134 302 274 83 10 chr12 71963070 71963166 -49294364 - B1F SINE Alu -1 148 46 7 1134 238 360 60 22 chr12 71965984 71966166 -49291364 - L1ME3 LINE L1 -6 6156 5968 7 1134 726 183 20 40 chr12 71966570 71966718 -49290812 - B1_Mur1 SINE Alu -2 147 3 7 1134 194 231 15 0 chr12 71967202 71967267 -49290263 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 1134 211 307 66 13 chr12 71967801 71967877 -49289653 - MER5A DNA MER1_type -64 125 46 7 1134 405 0 0 0 chr12 71967936 71967981 -49289549 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1134 208 350 31 10 chr12 71968128 71968226 -49289304 + MIRb SINE MIR 130 229 -39 7 1134 491 213 247 12 chr12 71969781 71969947 -49287583 + B3 SINE B2 2 206 -10 7 1134 437 216 40 0 chr12 71970136 71970229 -49287301 + MTE2b LTR MaLR 5 103 -276 7 1134 261 306 124 22 chr12 71970229 71970273 -49287257 + MT2A LTR ERVL 5 155 -378 7 1134 25 0 0 0 chr12 71970513 71970538 -49286992 + AT_rich Low_complexity Low_complexity 1 25 0 7 1134 243 261 15 0 chr12 71971025 71971090 -49286440 + (CATA)n Simple_repeat Simple_repeat 1 66 0 7 1134 700 329 44 3 chr12 71971329 71971649 -49285881 + L1MA8 LINE L1 5334 5666 -646 7 1134 2399 166 65 43 chr12 71971649 71972150 -49285380 - RMER19C LTR ERVK 0 611 29 7 1134 28 0 0 0 chr12 71972156 71972184 -49285346 + AT_rich Low_complexity Low_complexity 1 28 0 7 1134 1006 266 91 25 chr12 71972278 71972676 -49284854 + L1MA8 LINE L1 5769 6192 -99 7 1134 1014 195 45 58 chr12 71972689 71972810 -49284720 + URR1B DNA MER1_type 1 122 -103 7 1134 1003 65 216 0 chr12 71972810 71972963 -49284567 + B2_Mm1t SINE B2 2 187 -6 7 1134 1014 195 45 58 chr12 71972963 71973064 -49284466 + URR1B DNA MER1_type 123 220 -5 7 1134 268 224 105 0 chr12 71974812 71974888 -49282642 + MIRc SINE MIR 5 88 -180 7 1134 326 277 77 0 chr12 71975128 71975258 -49282272 - L1MC1 LINE L1 -167 6166 6027 7 1134 268 273 173 8 chr12 71975259 71975392 -49282138 - Charlie2b DNA MER1_type -61 2721 2567 7 1134 635 248 37 14 chr12 71975716 71975933 -49281597 - L1MC4 LINE L1 -450 7592 7371 7 1134 396 278 28 9 chr12 71975965 71976074 -49281456 - L1MC4 LINE L1 -1286 6596 6486 7 1134 1724 206 78 14 chr12 71976298 71976841 -49280689 + Lx7 LINE L1 7071 7696 0 7 1134 549 152 0 0 chr12 71977220 71977325 -49280205 + (TG)n Simple_repeat Simple_repeat 1 105 0 7 1134 375 301 81 52 chr12 71979874 71980046 -49277484 + B4A SINE B4 48 224 -68 7 1134 810 118 47 16 chr12 71979922 71980051 -49277479 + B1_Mus1 SINE Alu 16 148 0 7 1134 872 145 27 14 chr12 71982054 71982201 -49275329 - B1_Mur3 SINE Alu 0 149 1 7 1134 737 169 0 0 chr12 71983465 71983595 -49273935 - B1_Mur4 SINE Alu -16 134 5 7 1134 1480 56 0 0 chr12 71983837 71984015 -49273515 + B2_Mm1t SINE B2 1 178 -15 7 1134 777 22 0 0 chr12 71984015 71984106 -49273424 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 7 1134 357 272 51 26 chr12 71985220 71985353 -49272177 - MIRm SINE MIR -127 149 3 7 1134 505 251 89 22 chr12 71985578 71985757 -49271773 + MIR SINE MIR 13 203 -59 7 1134 647 83 16 47 chr12 71985942 71986069 -49271461 + (TCCC)n Simple_repeat Simple_repeat 3 125 0 7 1134 779 280 10 0 chr12 71987006 71987213 -49270317 + B3 SINE B2 1 209 -7 7 1134 1039 83 35 7 chr12 71990007 71990152 -49267378 + B1_Mur4 SINE Alu 1 149 -1 7 1134 266 323 96 6 chr12 71990399 71990555 -49266975 + MIRb SINE MIR 84 253 -15 7 1134 571 176 210 0 chr12 71991173 71991292 -49266238 - B1_Mur3 SINE Alu -5 144 1 7 1134 266 301 107 0 chr12 71992807 71992910 -49264620 - MLT1A1 LTR MaLR -294 114 1 7 1134 183 80 0 0 chr12 71992999 71993024 -49264506 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1134 243 0 0 0 chr12 71993780 71993807 -49263723 + (CCA)n Simple_repeat Simple_repeat 1 27 0 7 1134 224 149 21 0 chr12 71998700 71998747 -49258783 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1134 753 43 0 0 chr12 71998958 71999051 -49258479 + (TC)n Simple_repeat Simple_repeat 2 94 0 7 1134 503 229 85 74 chr12 71999738 71999927 -49257603 - B3A SINE B2 -7 191 1 7 1134 325 227 91 20 chr12 72001698 72001797 -49255733 + MER5B DNA MER1_type 5 110 -68 1 1134 180 0 0 0 chr12 72003507 72003527 -49254003 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 1134 495 309 72 7 chr12 72003557 72003710 -49253820 - RSINE1 SINE B4 0 165 3 3 1134 1876 129 58 10 chr12 72004134 72004447 -49253083 - ORR1A4 LTR MaLR -1 328 1 4 1134 273 29 0 0 chr12 72005435 72005469 -49252061 + (TTGG)n Simple_repeat Simple_repeat 3 36 0 5 1134 1427 38 38 16 chr12 72006006 72006191 -49251339 + B2_Mm1a SINE B2 2 190 -3 6 1134 802 112 37 0 chr12 72006224 72006358 -49251172 + RMER4A LTR ERVK 1 139 -327 7 1134 304 238 23 45 chr12 72006358 72006446 -49251084 + L1MEc LINE L1 1946 2031 -4369 8 1134 281 346 23 8 chr12 72006495 72006595 -49250935 - MER58A DNA MER1_type -78 146 45 9 1134 258 32 0 0 chr12 72006595 72006626 -49250904 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1134 281 346 23 8 chr12 72006626 72006653 -49250877 - MER58A DNA MER1_type -180 44 18 9 1134 378 314 38 54 chr12 72006654 72006839 -49250691 + MTEa LTR MaLR 1 182 -197 1 1134 1321 94 0 11 chr12 72006839 72007022 -49250508 + B2_Mm2 SINE B2 2 182 -13 1 1134 1488 53 14 5 chr12 72007042 72007252 -49250278 - L1_Mus3 LINE L1 -7 6631 6420 1 1134 350 311 103 7 chr12 72007584 72007720 -49249810 + RSINE1 SINE B4 4 152 -13 1 1134 249 128 0 0 chr12 72008585 72008632 -49248898 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1134 216 0 0 0 chr12 72010485 72010509 -49247021 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1134 853 135 75 0 chr12 72011967 72012100 -49245430 - B1_Mur4 SINE Alu -7 143 1 1 1134 237 289 36 12 chr12 72012100 72012184 -49245346 - MIR SINE MIR -97 165 80 1 1134 700 226 114 16 chr12 72012337 72012530 -49245000 - B3 SINE B2 -4 212 1 1 1134 1263 27 0 7 chr12 72012552 72012700 -49244830 + B1_Mus2 SINE Alu 1 147 0 2 1134 202 304 0 0 chr12 72013761 72013830 -49243700 + L2 LINE L2 2677 2745 -674 2 1134 492 236 123 0 chr12 72014836 72014942 -49242588 - PB1D7 SINE Alu 0 120 2 2 1134 234 0 0 0 chr12 72015011 72015037 -49242493 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1134 1078 115 63 47 chr12 72015289 72015480 -49242050 + B2_Mm2 SINE B2 1 194 -1 2 1134 1456 204 70 14 chr12 72016003 72016361 -49241169 - MT2A LTR ERVL -76 457 80 2 1134 4731 47 0 9 chr12 72016363 72016911 -49240619 + L1_Mus1 LINE L1 5989 6535 -32 2 1134 1244 41 0 0 chr12 72016911 72017057 -49240473 + B1_Mm SINE Alu 2 147 0 2 1134 4731 47 0 9 chr12 72017057 72017085 -49240445 + L1_Mus1 LINE L1 6536 6560 -7 2 1134 389 141 14 0 chr12 72017088 72017159 -49240371 + GA-rich Low_complexity Low_complexity 4 75 0 2 1134 297 235 0 0 chr12 72017159 72017227 -49240303 - MT2A LTR ERVL -448 85 18 2 1134 2917 47 6 0 chr12 72017969 72018313 -49239217 - ORR1A1 LTR MaLR 0 346 1 2 1134 655 323 19 50 chr12 72018589 72018850 -49238680 + MER2 DNA MER2_type 93 345 0 3 1134 2219 97 3 9 chr12 72019015 72019349 -49238181 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 1134 55538 21 19 19 chr12 72019351 72025822 -49231708 - IAPEz-int LTR ERVK -2 6479 6 3 1134 2219 97 3 9 chr12 72025822 72026156 -49231374 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 1134 899 25 8 0 chr12 72026156 72026267 -49231263 + B1_Mus1 SINE Alu 37 148 0 3 1134 22 0 0 0 chr12 72026267 72026289 -49231241 + AT_rich Low_complexity Low_complexity 1 22 0 3 1134 250 188 28 103 chr12 72026437 72026544 -49230986 - RMER1C Other Other -3 1339 1241 3 1134 306 268 66 66 chr12 72026561 72026598 -49230932 - B4A SINE B4 -140 152 1 3 1134 345 241 17 61 chr12 72026598 72026713 -49230817 - B3A SINE B2 -88 110 1 3 1134 240 161 0 75 chr12 72027396 72027448 -49230082 + L1_Mur3 LINE L1 4102 4151 -1729 3 1134 1451 63 15 20 chr12 72027448 72027643 -49229887 + B2_Mm2 SINE B2 1 194 -1 3 1134 240 161 0 75 chr12 72027643 72027657 -49229873 + L1_Mur3 LINE L1 4152 4163 -1717 3 1134 7412 167 139 122 chr12 72027836 72028260 -49229270 + L1_Mur3 LINE L1 2372 2781 -3099 3 1134 1023 65 0 0 chr12 72028260 72028398 -49229132 + B1_Mus1 SINE Alu 11 148 0 4 1134 7412 167 139 122 chr12 72028398 72028655 -49228875 + L1_Mur3 LINE L1 2782 3031 -2849 3 1134 2741 67 12 0 chr12 72028655 72028997 -49228533 + ORR1A1 LTR MaLR 1 346 0 4 1134 7412 167 139 122 chr12 72028997 72029299 -49228231 + L1_Mur3 LINE L1 3032 3335 -2545 3 1134 873 170 7 7 chr12 72029299 72029447 -49228083 + B1_Mur1 SINE Alu 2 149 0 4 1134 7412 167 139 122 chr12 72029447 72030180 -49227350 + L1_Mur3 LINE L1 3336 4099 -1781 3 1134 1137 66 0 0 chr12 72030180 72030317 -49227213 - B1_Mus1 SINE Alu -10 138 2 4 1134 7412 167 139 122 chr12 72030317 72030379 -49227151 + L1_Mur3 LINE L1 4100 4151 -1729 3 1134 659 181 98 24 chr12 72030379 72030543 -49226987 + B2_Mm2 SINE B2 2 177 -18 4 1134 7412 167 139 122 chr12 72030543 72030798 -49226732 + L1_Mur3 LINE L1 4152 4599 -1281 3 1134 4369 120 90 22 chr12 72030798 72031459 -49226071 + RMER19A LTR ERVK 1 719 -18 4 1134 1632 27 0 5 chr12 72031459 72031647 -49225883 + B2_Mm1a SINE B2 2 188 -5 4 1134 4369 120 90 22 chr12 72031647 72031675 -49225855 + RMER19A LTR ERVK 720 737 0 4 1134 7412 167 139 122 chr12 72031675 72031884 -49225646 + L1_Mur3 LINE L1 4600 4795 -1085 3 1134 2534 168 22 100 chr12 72031892 72032441 -49225089 + RLTR18B LTR ERVK 1 506 -6 4 1134 999 149 42 0 chr12 72032446 72032614 -49224916 + L1_Mur3 LINE L1 4809 4983 -897 3 1134 359 154 0 15 chr12 72032619 72032675 -49224855 - MTC LTR MaLR 0 421 366 4 1134 1417 83 0 30 chr12 72032675 72032874 -49224656 + B2_Mm2 SINE B2 2 194 -1 4 1134 2036 165 36 3 chr12 72032913 72033272 -49224258 - MTC LTR MaLR -44 377 7 4 1134 2301 175 76 20 chr12 72033275 72033777 -49223753 + L1_Mur3 LINE L1 4990 5519 -361 3 1134 211 269 6 22 chr12 72033786 72033965 -49223565 + (TTGGGG)n Simple_repeat Simple_repeat 5 180 0 5 1134 2333 65 11 110 chr12 72034000 72034165 -49223365 - ORR1A2 LTR MaLR 0 327 166 5 1134 1741 16 0 0 chr12 72034165 72034357 -49223173 - B2_Mm1a SINE B2 0 193 2 5 1134 2333 65 11 110 chr12 72034357 72034554 -49222976 - ORR1A2 LTR MaLR -162 165 1 5 1134 1996 125 72 0 chr12 72034559 72034894 -49222636 - ORR1B2 LTR MaLR -8 359 1 5 1134 384 304 12 34 chr12 72034894 72035221 -49222309 + (TTGGGG)n Simple_repeat Simple_repeat 1 319 0 5 1134 226 232 9 9 chr12 72035279 72035392 -49222138 + (TTGGGG)n Simple_repeat Simple_repeat 5 117 0 5 1134 222 288 0 17 chr12 72035959 72036019 -49221511 - ID4_ SINE ID -14 69 11 5 1134 324 0 0 0 chr12 72036082 72036118 -49221412 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1134 371 264 55 36 chr12 72036118 72036228 -49221302 - RSINE1 SINE B4 -45 120 9 5 1134 636 291 74 26 chr12 72036314 72036543 -49220987 + 7SK RNA RNA 1 240 -91 5 1134 711 150 52 22 chr12 72036553 72036689 -49220841 + B1_Mur4 SINE Alu 1 140 -10 5 1134 673 217 35 7 chr12 72036725 72036869 -49220661 + B1F SINE Alu 1 148 -1 6 1134 180 0 0 0 chr12 72036878 72036898 -49220632 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 6 1134 236 239 35 44 chr12 72037229 72037343 -49220187 - Lx9 LINE L1 -8 7636 7524 6 1134 342 0 0 0 chr12 72037349 72037387 -49220143 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1134 1418 176 96 17 chr12 72037391 72037692 -49219838 - Lx9 LINE L1 -931 6713 6389 6 1134 21 0 0 0 chr12 72037941 72037962 -49219568 + AT_rich Low_complexity Low_complexity 1 21 0 6 1134 1363 184 93 101 chr12 72038076 72038440 -49219090 - ORR1C2 LTR MaLR 0 384 23 6 1134 180 0 0 0 chr12 72038440 72038460 -49219070 + (G)n Simple_repeat Simple_repeat 1 20 0 6 1134 1363 184 93 101 chr12 72038460 72038482 -49219048 - ORR1C2 LTR MaLR -362 22 1 6 1134 22 70 0 0 chr12 72038864 72038907 -49218623 + GC_rich Low_complexity Low_complexity 1 43 0 6 1134 241 191 0 0 chr12 72040425 72040467 -49217063 + T-rich Low_complexity Low_complexity 1 42 0 6 1134 282 304 44 9 chr12 72040467 72040580 -49216950 - PB1D10 SINE Alu 0 117 1 6 1134 964 210 52 33 chr12 72040776 72040988 -49216542 + B3 SINE B2 1 216 0 7 1134 462 249 11 111 chr12 72041887 72042068 -49215462 + RSINE1 SINE B4 3 165 0 7 1134 189 107 0 0 chr12 72042269 72042297 -49215233 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1134 727 252 86 0 chr12 72042301 72042499 -49215031 - B3 SINE B2 0 216 2 7 1134 1156 88 0 0 chr12 72042549 72042697 -49214833 - B1_Mus1 SINE Alu 0 148 1 7 1134 260 91 55 0 chr12 72042890 72042945 -49214585 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 7 1134 353 258 269 47 chr12 72042948 72043119 -49214411 - ID_B1 SINE B4 -4 220 12 7 1134 369 295 78 26 chr12 72043480 72043633 -49213897 - RSINE1 SINE B4 -4 161 1 7 1134 207 0 0 0 chr12 72043770 72043793 -49213737 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 7 1134 314 208 0 105 chr12 72044643 72044729 -49212801 - ID_B1 SINE B4 -34 190 114 7 1134 429 143 100 100 chr12 72044704 72044844 -49212686 - MTC-int LTR MaLR -1075 183 44 8 1134 1493 188 149 9 chr12 72044853 72045201 -49212329 - MTC LTR MaLR 0 421 25 8 1134 370 262 206 11 chr12 72045294 72045483 -49212047 - B4A SINE B4 -66 226 1 8 1134 226 123 51 64 chr12 72045516 72045594 -49211936 + T-rich Low_complexity Low_complexity 2 78 0 8 1134 276 53 0 0 chr12 72045594 72045632 -49211898 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 8 1134 1061 59 73 0 chr12 72045632 72045768 -49211762 - B1_Mus1 SINE Alu -2 146 1 8 1134 524 213 114 8 chr12 72046495 72046618 -49210912 + ID_B1 SINE B4 81 216 -8 8 1134 882 93 101 0 chr12 72047057 72047186 -49210344 + B1_Mus2 SINE Alu 1 142 -5 8 1134 423 0 0 0 chr12 72047282 72047329 -49210201 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1134 526 261 51 0 chr12 72047344 72047482 -49210048 - RSINE1 SINE B4 -19 146 2 8 1134 781 228 18 31 chr12 72047624 72047787 -49209743 + RSINE1 SINE B4 3 163 -2 8 1134 201 195 0 0 chr12 72047993 72048034 -49209496 + G-rich Low_complexity Low_complexity 1 41 0 9 1134 207 250 59 0 chr12 72049054 72049122 -49208408 + MIRb SINE MIR 103 174 -94 9 1134 199 300 144 9 chr12 72049422 72049533 -49207997 - MIRb SINE MIR -59 209 84 9 1134 1305 97 5 26 chr12 72049774 72049965 -49207565 + B2_Mm2 SINE B2 1 187 -8 9 1134 1197 75 0 0 chr12 72050001 72050148 -49207382 + B1_Mus1 SINE Alu 2 148 0 9 1134 857 79 150 0 chr12 72050239 72050366 -49207164 + B1_Mm SINE Alu 1 146 -1 9 1134 207 105 26 0 chr12 72050367 72050405 -49207125 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 9 1134 495 343 91 61 chr12 72050846 72050952 -49206578 - Lx9 LINE L1 -25 7448 7332 9 1134 369 0 0 0 chr12 72050952 72050993 -49206537 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1134 2284 221 25 21 chr12 72050993 72051492 -49206038 - Lx9 LINE L1 -178 7466 6825 9 1134 1227 41 0 0 chr12 72051501 72051647 -49205883 + B1_Mus2 SINE Alu 2 147 0 9 1134 878 194 37 4 chr12 72051680 72051899 -49205631 - Lx9 LINE L1 -1728 5916 5652 9 1134 2461 198 106 15 chr12 72051921 72052583 -49204947 - Lx9 LINE L1 -1188 4659 3938 9 1134 381 22 0 0 chr12 72052584 72052630 -49204900 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1134 1103 156 15 20 chr12 72052638 72052834 -49204696 - Lx9 LINE L1 -3369 2478 2284 9 1134 807 179 153 197 chr12 72052844 72053081 -49204449 - Lx9 LINE L1 -6272 1336 1082 9 1134 261 80 0 39 chr12 72053081 72053133 -49204397 + B3 SINE B2 167 216 0 1 1134 807 179 153 197 chr12 72053133 72053296 -49204234 - Lx9 LINE L1 -6272 1081 905 9 1134 1095 206 4 35 chr12 72053458 72053684 -49203846 + ID_B1 SINE B4 2 220 -4 1 1134 664 221 0 0 chr12 72053699 72053821 -49203709 - B1_Mur3 SINE Alu -23 126 5 1 1134 391 215 13 135 chr12 72053701 72053857 -49203673 - MT2B LTR ERVL -323 278 142 1 1134 594 146 8 24 chr12 72054306 72054432 -49203098 + CT-rich Low_complexity Low_complexity 1 124 0 1 1134 568 25 24 36 chr12 72054584 72054668 -49202862 + B1_Mm SINE Alu 65 147 0 1 1134 633 187 8 8 chr12 72054852 72054976 -49202554 - B1_Mur1 SINE Alu -3 146 23 1 1134 228 67 0 0 chr12 72055074 72055104 -49202426 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1134 324 182 0 43 chr12 72055137 72055206 -49202324 - PB1D10 SINE Alu -15 102 37 1 1134 23 0 0 0 chr12 72055549 72055572 -49201958 + AT_rich Low_complexity Low_complexity 1 23 0 1 1134 699 194 200 0 chr12 72055913 72056088 -49201442 - B3 SINE B2 -6 210 1 1 1134 701 194 7 14 chr12 72056113 72056259 -49201271 - B1_Mus1 SINE Alu -3 145 1 1 1134 1366 14 0 0 chr12 72056495 72056642 -49200888 + B1_Mus2 SINE Alu 1 147 0 1 1134 1189 50 14 0 chr12 72057361 72057500 -49200030 + B1_Mm SINE Alu 2 142 -5 1 1134 29 0 0 0 chr12 72057549 72057578 -49199952 + AT_rich Low_complexity Low_complexity 1 29 0 1 1134 1046 69 198 12 chr12 72057904 72058066 -49199464 - B2_Mm2 SINE B2 -2 193 2 1 1134 337 297 59 46 chr12 72058076 72058228 -49199302 - MER58A DNA MER1_type -19 205 52 1 1134 598 250 93 6 chr12 72058288 72058449 -49199081 + B3 SINE B2 1 175 -41 1 1134 186 294 0 0 chr12 72058457 72058508 -49199022 - L3 LINE CR1 -847 3642 3592 1 1134 347 275 53 35 chr12 72058514 72058627 -49198903 + PB1D7 SINE Alu 2 116 -4 1 1134 280 246 193 0 chr12 72058780 72058894 -49198636 - MIR SINE MIR -3 259 124 1 1134 484 234 8 86 chr12 72059309 72059426 -49198104 - B1F SINE Alu -41 108 1 1 1134 353 281 67 19 chr12 72059490 72059595 -49197935 + B1_Mur1 SINE Alu 38 147 -2 1 1134 180 0 0 0 chr12 72059595 72059615 -49197915 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1134 225 269 19 0 chr12 72059646 72059698 -49197832 + RSINE1 SINE B4 5 57 -108 1 1134 231 225 96 53 chr12 72059759 72059853 -49197677 + 7SK RNA RNA 1 98 -233 1 1134 229 319 69 0 chr12 72059875 72059947 -49197583 + 7SK RNA RNA 159 235 -96 1 1134 391 301 120 0 chr12 72060022 72060155 -49197375 + B1F SINE Alu 1 149 0 1 1134 444 291 64 0 chr12 72060302 72060412 -49197118 + RSINE1 SINE B4 22 138 -27 1 1134 378 0 0 0 chr12 72060423 72060465 -49197065 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1134 554 210 202 0 chr12 72060493 72060617 -49196913 + B1_Mur1 SINE Alu 1 149 0 1 1134 210 71 0 0 chr12 72061223 72061251 -49196279 + (GAA)n Simple_repeat Simple_repeat 2 29 0 1 1134 481 237 79 0 chr12 72061281 72061395 -49196135 + B1F SINE Alu 26 148 -1 1 1134 549 0 0 0 chr12 72061490 72061551 -49195979 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 1134 724 196 0 48 chr12 72061576 72061721 -49195809 + B1_Mur1 SINE Alu 6 143 -6 1 1134 1237 62 0 0 chr12 72061871 72062017 -49195513 + B1_Mus2 SINE Alu 2 147 0 1 1134 1663 33 16 0 chr12 72062281 72062465 -49195065 - B2_Mm2 SINE B2 -7 188 2 1 1134 436 235 134 129 chr12 72063404 72063590 -49193940 - B3A SINE B2 -6 189 3 1 1134 195 42 0 0 chr12 72063786 72063810 -49193720 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1134 1777 21 0 5 chr12 72063812 72064004 -49193526 - B2_Mm1t SINE B2 -2 191 1 1 1134 883 164 57 0 chr12 72064352 72064492 -49193038 + B1_Mus1 SINE Alu 1 148 0 1 1134 683 200 0 31 chr12 72064502 72064631 -49192899 + B1_Mur1 SINE Alu 2 126 -23 1 1134 278 346 58 7 chr12 72064633 72064770 -49192760 + B1F SINE Alu 4 147 -2 1 1134 225 343 14 28 chr12 72065533 72065605 -49191925 + PB1 SINE Alu 42 112 -15 1 1134 344 306 45 0 chr12 72065778 72065889 -49191641 + MLT1C LTR MaLR 3 118 -349 1 1134 444 248 47 19 chr12 72065978 72066085 -49191445 + B1F1 SINE Alu 5 114 -35 1 1134 357 244 68 23 chr12 72066123 72066211 -49191319 + PB1D7 SINE Alu 23 114 -6 1 1134 346 128 175 25 chr12 72066220 72066300 -49191230 + B1F2 SINE Alu 46 137 -12 1 1134 291 85 0 0 chr12 72066300 72066347 -49191183 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1134 1089 130 6 6 chr12 72066366 72066528 -49191002 + B2_Mm2 SINE B2 1 162 -33 1 1134 233 185 36 18 chr12 72066545 72066600 -49190930 + GA-rich Low_complexity Low_complexity 4 59 0 1 1134 1502 244 81 36 chr12 72066988 72067492 -49190038 + Lx6 LINE L1 6508 7399 -61 1 1134 362 227 121 65 chr12 72067590 72067752 -49189778 - RLTR13D3 LTR ERVK 0 1114 981 1 1134 1203 49 28 0 chr12 72067840 72067982 -49189548 + B1_Mm SINE Alu 2 147 0 1 1134 268 167 0 0 chr12 72068140 72068182 -49189348 - B2_Mm2 SINE B2 -153 42 1 1 1134 235 245 0 0 chr12 72068628 72068677 -49188853 - RLTR13D3 LTR ERVK -1065 49 1 1 1134 340 186 30 63 chr12 72069074 72069186 -49188344 - B1F1 SINE Alu 0 120 1 1 1134 290 209 26 65 chr12 72069186 72069267 -49188263 + B1_Mur2 SINE Alu 39 116 -33 1 1134 246 32 0 0 chr12 72069808 72069839 -49187691 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1134 639 27 0 0 chr12 72070106 72070179 -49187351 - tRNA-Lys-AAG tRNA tRNA -3 73 1 1 1134 270 148 0 0 chr12 72070249 72070303 -49187227 + (T)n Simple_repeat Simple_repeat 1 54 0 1 1134 274 259 22 56 chr12 72070912 72071002 -49186528 - B3 SINE B2 -69 147 61 1 1134 455 178 168 53 chr12 72071066 72071179 -49186351 + B1_Mus2 SINE Alu 4 129 -18 1 1134 334 190 0 33 chr12 72071346 72071406 -49186124 + B1F SINE Alu 6 63 -86 1 1134 628 261 0 34 chr12 72071468 72071615 -49185915 + B1_Mur1 SINE Alu 6 147 -2 1 1134 1230 48 7 13 chr12 72071621 72071770 -49185760 + B1_Mus1 SINE Alu 1 148 0 1 1134 180 0 0 0 chr12 72072038 72072058 -49185472 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1134 805 178 0 40 chr12 72072421 72072573 -49184957 - B1_Mur4 SINE Alu -2 148 3 1 1134 333 0 0 0 chr12 72072586 72072623 -49184907 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 1 1134 409 274 58 19 chr12 72072626 72072730 -49184800 - PB1D10 SINE Alu -3 114 7 1 1134 418 301 142 40 chr12 72073118 72073498 -49184032 + L1MC4 LINE L1 7115 7533 -509 1 1134 201 108 0 0 chr12 72073499 72073536 -49183994 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1 1134 740 168 21 28 chr12 72073536 72073677 -49183853 - B1_Mur3 SINE Alu -1 148 9 1 1134 270 0 0 0 chr12 72073711 72073741 -49183789 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1134 408 241 0 0 chr12 72073741 72073828 -49183702 - B3 SINE B2 -111 87 1 1 1134 400 284 0 68 chr12 72073907 72074024 -49183506 + B3A SINE B2 88 196 -2 1 1134 225 305 78 87 chr12 72074143 72074258 -49183272 + PB1D10 SINE Alu 2 115 -2 1 1134 1316 54 0 0 chr12 72074442 72074589 -49182941 - B1_Mm SINE Alu 0 147 1 1 1134 26 0 0 0 chr12 72074592 72074618 -49182912 + AT_rich Low_complexity Low_complexity 1 26 0 1 1134 261 119 0 0 chr12 72075131 72075173 -49182357 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1134 1302 41 0 0 chr12 72075173 72075320 -49182210 - B1_Mus2 SINE Alu 0 147 1 1 1134 180 0 0 0 chr12 72075550 72075570 -49181960 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1134 896 134 15 0 chr12 72076550 72076684 -49180846 + B1_Mus1 SINE Alu 13 148 0 1 1134 258 136 0 0 chr12 72076684 72076728 -49180802 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1134 222 62 0 0 chr12 72077138 72077170 -49180360 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1134 265 222 0 0 chr12 72077192 72077246 -49180284 - PB1D10 SINE Alu -35 82 29 1 1134 968 213 21 37 chr12 72077665 72077855 -49179675 - B3 SINE B2 -27 189 3 1 1134 1590 57 0 5 chr12 72077862 72078055 -49179475 - B2_Mm2 SINE B2 -3 192 1 1 1134 1802 21 0 0 chr12 72078162 72078355 -49179175 - B2_Mm1a SINE B2 0 193 1 1 1134 386 337 0 0 chr12 72078355 72078456 -49179074 + RSINE1 SINE B4 57 157 -8 1 1134 425 135 381 0 chr12 72078545 72078671 -49178859 + B2_Mm2 SINE B2 1 174 -21 1 1134 1272 61 0 0 chr12 72078849 72078997 -49178533 + B1_Mus1 SINE Alu 1 148 0 1 1134 409 209 66 2 chr12 72079055 72079210 -49178320 - B2_Mm2 SINE B2 0 216 46 1 1134 1371 86 23 0 chr12 72079237 72079412 -49178118 - B2_Mm2 SINE B2 -14 181 3 1 1134 777 181 21 21 chr12 72079432 72079573 -49177957 - B3A SINE B2 -48 150 10 1 1134 298 261 68 0 chr12 72079952 72080040 -49177490 - RSINE1 SINE B4 -62 103 10 1 1134 28 0 0 0 chr12 72080044 72080072 -49177458 + AT_rich Low_complexity Low_complexity 1 28 0 1 1134 639 150 150 0 chr12 72080079 72080192 -49177338 + B1_Mus1 SINE Alu 6 135 -13 1 1134 221 0 35 0 chr12 72080192 72080221 -49177309 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1134 257 235 210 0 chr12 72080224 72080305 -49177225 - B1F2 SINE Alu -32 117 20 1 1134 498 324 0 47 chr12 72080332 72080523 -49177007 + B3A SINE B2 1 182 -16 1 1134 410 221 72 108 chr12 72080523 72080551 -49176979 + B4A SINE B4 64 85 -207 1 1134 893 134 35 0 chr12 72080551 72080693 -49176837 + B1_Mus1 SINE Alu 2 148 0 2 1134 253 309 146 12 chr12 72080731 72080813 -49176717 + ID_B1 SINE B4 4 96 -128 2 1134 370 195 32 65 chr12 72081047 72081140 -49176390 + B3A SINE B2 2 91 -107 2 1134 329 295 62 10 chr12 72081353 72081449 -49176081 - B1F SINE Alu -22 127 27 2 1134 274 231 46 37 chr12 72081448 72081556 -49175974 - Charlie1a DNA MER1_type -43 1412 1304 2 1134 1428 68 5 45 chr12 72081611 72081810 -49175720 - B2_Mm2 SINE B2 -4 191 1 2 1134 231 339 132 16 chr12 72081847 72081976 -49175554 + MIRb SINE MIR 47 190 -78 2 1134 214 278 12 143 chr12 72081984 72082068 -49175462 + ID2 SINE ID 11 83 0 2 1134 766 204 7 20 chr12 72082299 72082449 -49175081 + B1_Mur3 SINE Alu 1 148 -1 2 1134 400 213 13 0 chr12 72082474 72082549 -49174981 + ID4 SINE ID 2 77 -6 2 1134 329 246 58 0 chr12 72082739 72082808 -49174722 + ID SINE ID 3 75 -149 2 1134 277 229 33 127 chr12 72082808 72082849 -49174681 + ID2 SINE ID 3 101 -51 2 1134 517 154 106 44 chr12 72083088 72083214 -49174316 - B1_Mus2 SINE Alu 0 148 8 2 1134 490 121 75 66 chr12 72083225 72083331 -49174199 + PB1D9 SINE Alu 2 108 -12 2 1134 1237 68 0 0 chr12 72083408 72083556 -49173974 - B1_Mus1 SINE Alu 0 148 1 2 1134 394 329 64 32 chr12 72083584 72083741 -49173789 + RSINE1 SINE B4 3 164 -1 2 1134 665 221 242 12 chr12 72083844 72084009 -49173521 - ID_B1 SINE B4 -17 207 5 2 1134 475 345 30 40 chr12 72084022 72084224 -49173306 - ID_B1 SINE B4 -10 214 15 2 1134 367 267 33 11 chr12 72085176 72085267 -49172263 + B1F SINE Alu 2 94 -55 2 1134 417 233 56 0 chr12 72085836 72085926 -49171604 - B4A SINE B4 -197 95 1 2 1134 498 265 88 7 chr12 72085979 72086116 -49171414 + B1F SINE Alu 1 148 -1 2 1134 395 298 141 0 chr12 72086413 72086534 -49170996 + ID_B1 SINE B4 65 202 -22 2 1134 220 298 131 66 chr12 72086443 72086565 -49170965 + B1F SINE Alu 20 149 0 2 1134 226 383 19 0 chr12 72087154 72087261 -49170269 + RMER12 LTR ERVK 737 845 -477 2 1134 21 0 0 0 chr12 72087434 72087455 -49170075 + AT_rich Low_complexity Low_complexity 1 21 0 2 1134 21 36 0 0 chr12 72087930 72087958 -49169572 + AT_rich Low_complexity Low_complexity 1 28 0 2 1134 333 301 69 56 chr12 72088017 72088161 -49169369 + ID_B1 SINE B4 79 224 0 2 1134 249 246 45 15 chr12 72088165 72088231 -49169299 + ID4_ SINE ID 5 72 -11 2 1134 1546 69 5 0 chr12 72088273 72088461 -49169069 - B2_Mm1t SINE B2 -3 190 2 2 1134 1246 61 0 0 chr12 72088556 72088703 -49168827 + B1_Mus1 SINE Alu 2 148 0 2 1134 210 298 0 0 chr12 72088810 72088867 -49168663 + ID4_ SINE ID 16 72 -11 2 1134 1063 200 49 15 chr12 72088917 72089120 -49168410 - B3 SINE B2 -4 212 3 2 1134 216 0 0 0 chr12 72089209 72089233 -49168297 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1134 420 200 0 13 chr12 72089233 72089309 -49168221 - PB1D9 SINE Alu -9 111 37 2 1135 716 183 0 25 chr12 72089616 72089734 -49167796 + PB1D9 SINE Alu 2 116 -4 2 1135 246 73 73 0 chr12 72090291 72090332 -49167198 - PB1D9 SINE Alu 0 120 77 2 1135 33 66 0 0 chr12 72090567 72090628 -49166902 + AT_rich Low_complexity Low_complexity 1 61 0 2 1135 437 214 11 22 chr12 72090636 72090727 -49166803 + PB1D9 SINE Alu 13 102 -18 2 1135 287 331 183 8 chr12 72090776 72090907 -49166623 - RSINE1 SINE B4 -8 157 4 2 1135 271 281 0 0 chr12 72090931 72090988 -49166542 + B3A SINE B2 11 67 -131 2 1135 433 142 44 61 chr12 72091105 72091285 -49166245 + CT-rich Low_complexity Low_complexity 3 179 0 2 1135 693 188 65 0 chr12 72091289 72091427 -49166103 - B1_Mur2 SINE Alu 0 149 3 2 1135 231 257 88 75 chr12 72091608 72091688 -49165842 - ID4_ SINE ID 0 83 3 2 1135 311 172 95 35 chr12 72091885 72092000 -49165530 + B3 SINE B2 2 192 -6 2 1135 210 37 0 0 chr12 72092035 72092062 -49165468 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1135 700 188 26 53 chr12 72092343 72092495 -49165035 + B1_Mur3 SINE Alu 2 149 0 2 1135 254 302 91 36 chr12 72093069 72093179 -49164351 - PB1D10 SINE Alu -1 116 1 2 1135 1194 15 30 0 chr12 72093461 72093595 -49163935 - B1_Mus2 SINE Alu -9 138 1 2 1135 229 310 117 33 chr12 72093686 72093866 -49163664 - B3A SINE B2 -3 195 1 2 1135 1166 48 6 76 chr12 72094139 72094296 -49163234 + B1_Mus2 SINE Alu 2 147 0 2 1135 180 77 0 0 chr12 72094296 72094322 -49163208 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1135 1380 80 36 26 chr12 72094661 72094854 -49162676 - B2_Mm2 SINE B2 0 195 1 2 1135 580 196 71 21 chr12 72094986 72095127 -49162403 + B1F2 SINE Alu 2 149 0 2 1135 905 155 240 6 chr12 72095565 72095740 -49161790 + B3 SINE B2 1 216 0 2 1135 253 274 14 0 chr12 72095742 72095815 -49161715 + (CATA)n Simple_repeat Simple_repeat 2 75 0 2 1135 390 152 121 0 chr12 72095837 72095903 -49161627 + PB1D9 SINE Alu 7 80 -40 2 1135 225 0 0 0 chr12 72095908 72095933 -49161597 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1135 24 32 0 0 chr12 72096000 72096031 -49161499 + AT_rich Low_complexity Low_complexity 1 31 0 2 1135 774 249 81 0 chr12 72096047 72096220 -49161310 - B3 SINE B2 -27 189 3 2 1135 3056 91 5 8 chr12 72096386 72096783 -49160747 - MTA_Mm LTR MaLR 0 396 1 2 1135 527 202 0 44 chr12 72096895 72097009 -49160521 - B1_Mur2 SINE Alu 0 149 41 2 1135 279 0 0 0 chr12 72097122 72097153 -49160377 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1135 548 241 19 0 chr12 72097657 72097765 -49159765 + B1_Mur4 SINE Alu 1 110 -40 2 1135 793 67 217 0 chr12 72098137 72098257 -49159273 + B1_Mm SINE Alu 2 147 0 2 1135 854 204 50 28 chr12 72098321 72098502 -49159028 + B3 SINE B2 28 212 -4 2 1135 324 247 49 12 chr12 72098905 72098987 -49158543 - B1F1 SINE Alu -51 98 14 2 1135 1202 75 0 0 chr12 72099141 72099287 -49158243 - B1_Mus2 SINE Alu -1 146 1 2 1135 336 200 0 0 chr12 72099523 72099578 -49157952 + PB1D9 SINE Alu 9 63 -57 2 1135 342 0 0 0 chr12 72099578 72099616 -49157914 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1135 1032 88 7 13 chr12 72099715 72099865 -49157665 - B2_Mm2 SINE B2 -45 150 2 2 1135 343 237 34 6 chr12 72101097 72101217 -49156313 + PB1D9 SINE Alu 25 148 0 2 1135 494 208 38 0 chr12 72101418 72101524 -49156006 - B1_Mur1 SINE Alu -6 143 34 2 1135 288 0 0 0 chr12 72101632 72101664 -49155866 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 2 1135 1056 251 118 36 chr12 72102525 72102932 -49154598 - MTD LTR MaLR 0 421 8 2 1135 400 241 74 110 chr12 72103202 72103365 -49154165 - B4 SINE B4 -42 250 94 2 1135 663 116 121 23 chr12 72103755 72103887 -49153643 + B1_Mur4 SINE Alu 6 150 0 2 1135 1792 26 0 0 chr12 72104445 72104637 -49152893 + B2_Mm1t SINE B2 2 193 0 2 1135 1499 50 78 0 chr12 72104680 72104840 -49152690 + B2_Mm1t SINE B2 1 160 -33 2 1135 243 0 0 0 chr12 72104840 72104867 -49152663 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2 1135 1499 50 78 0 chr12 72104867 72104885 -49152645 + B2_Mm1t SINE B2 161 191 -2 2 1135 263 211 47 19 chr12 72106731 72106837 -49150693 + Lx2A LINE L1 6900 7008 0 2 1135 1386 76 17 0 chr12 72106867 72107039 -49150491 + B2_Mm2 SINE B2 2 176 -19 2 1135 1194 88 0 0 chr12 72107482 72107629 -49149901 - B1_Mm SINE Alu 0 147 1 2 1135 307 75 0 0 chr12 72107715 72107755 -49149775 - U2 snRNA snRNA -148 40 1 2 1135 759 252 113 39 chr12 72107859 72108168 -49149362 + Lx8 LINE L1 6896 7227 -246 2 1135 213 94 0 0 chr12 72108302 72108334 -49149196 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1135 259 240 146 55 chr12 72108334 72108444 -49149086 + PB1D9 SINE Alu 1 120 0 2 1135 537 182 146 31 chr12 72108535 72108665 -49148865 + B1_Mur1 SINE Alu 5 149 0 2 1135 1208 61 0 33 chr12 72108688 72108840 -49148690 + B1_Mus2 SINE Alu 1 147 0 2 1135 532 234 113 0 chr12 72109236 72109360 -49148170 + B1_Mus1 SINE Alu 11 148 0 2 1135 224 338 0 51 chr12 72109650 72109728 -49147802 - ID4_ SINE ID -9 74 1 2 1135 22 0 0 0 chr12 72110066 72110088 -49147442 + AT_rich Low_complexity Low_complexity 1 22 0 2 1135 216 0 0 0 chr12 72110245 72110269 -49147261 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1135 180 111 0 0 chr12 72110324 72110351 -49147179 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 1135 1246 36 0 0 chr12 72110515 72110654 -49146876 + B1_Mus2 SINE Alu 1 139 -8 2 1135 5780 228 90 22 chr12 72111023 72112842 -49144688 - MYSERV6-int LTR ERVK -1813 4737 3050 2 1135 640 312 38 26 chr12 72113199 72113466 -49144064 - B4A SINE B4 -20 272 3 2 1135 255 125 0 0 chr12 72114752 72114792 -49142738 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1135 1096 115 0 7 chr12 72114795 72114944 -49142586 - B1_Mus1 SINE Alu 0 148 1 2 1135 232 191 99 42 chr12 72115136 72115207 -49142323 + PB1D10 SINE Alu 42 116 -1 2 1135 242 216 19 58 chr12 72117544 72117647 -49139883 + C-rich Low_complexity Low_complexity 2 100 0 2 1135 324 215 30 48 chr12 72117733 72117899 -49139631 + (CGGGG)n Simple_repeat Simple_repeat 4 166 0 3 1135 321 100 0 0 chr12 72118285 72118335 -49139195 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1135 423 229 59 79 chr12 72118942 72119094 -49138436 - B1F2 SINE Alu 0 149 1 3 1135 21 0 0 0 chr12 72119135 72119156 -49138374 + AT_rich Low_complexity Low_complexity 1 21 0 3 1135 362 21 0 21 chr12 72119417 72119465 -49138065 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 3 1135 232 211 0 81 chr12 72119487 72119549 -49137981 - B1F2 SINE Alu -52 97 41 3 1135 275 204 0 0 chr12 72119772 72119826 -49137704 + B1F2 SINE Alu 1 54 -95 3 1135 195 125 0 0 chr12 72120080 72120120 -49137410 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1135 315 71 0 0 chr12 72120970 72121012 -49136518 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1135 296 257 0 0 chr12 72121028 72121098 -49136432 - B1F2 SINE Alu -78 71 2 3 1135 783 248 47 5 chr12 72121246 72121461 -49136069 - ID_B1 SINE B4 0 224 1 3 1135 1064 119 32 16 chr12 72121697 72121885 -49135645 - B2_Mm2 SINE B2 -4 191 1 3 1135 226 241 17 0 chr12 72122008 72122066 -49135464 + (TGAG)n Simple_repeat Simple_repeat 4 62 0 3 1135 259 345 9 18 chr12 72122069 72122181 -49135349 + MER5A DNA MER1_type 4 114 -75 3 1135 23 33 0 0 chr12 72122446 72122476 -49135054 + AT_rich Low_complexity Low_complexity 1 30 0 3 1135 801 171 21 14 chr12 72122619 72122761 -49134769 - B1_Mur3 SINE Alu -5 144 2 3 1135 273 330 57 42 chr12 72122925 72123118 -49134412 - L2c LINE L2 -1 3386 3191 3 1135 268 263 104 19 chr12 72123484 72123601 -49133929 - B1F2 SINE Alu 0 120 1 3 1135 489 229 0 10 chr12 72123691 72123788 -49133742 - B1_Mur1 SINE Alu -2 147 52 3 1135 569 195 10 2 chr12 72125095 72125206 -49132324 + B1_Mur1 SINE Alu 9 118 -29 3 1135 387 349 8 8 chr12 72125199 72125329 -49132201 + ID_B1 SINE B4 86 215 -9 3 1135 1073 64 7 0 chr12 72125447 72125587 -49131943 - B1_Mus2 SINE Alu -6 141 1 3 1135 268 105 0 50 chr12 72125672 72125732 -49131798 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 3 1135 194 62 0 30 chr12 72125785 72125818 -49131712 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1135 462 90 25 13 chr12 72125821 72125900 -49131630 - B1_Mur4 SINE Alu -1 149 70 3 1135 1156 61 0 20 chr12 72126085 72126223 -49131307 + B1_Mus2 SINE Alu 1 138 -9 3 1135 225 65 0 0 chr12 72126223 72126254 -49131276 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1135 1156 61 0 20 chr12 72126254 72126265 -49131265 + B1_Mus2 SINE Alu 139 147 0 3 1135 381 281 66 40 chr12 72126697 72126849 -49130681 + RSINE1 SINE B4 3 158 -7 3 1135 449 254 38 45 chr12 72126874 72127006 -49130524 + B3A SINE B2 33 163 -35 3 1135 261 0 0 0 chr12 72127480 72127509 -49130021 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1135 1098 72 0 0 chr12 72127604 72127742 -49129788 + B1_Mus2 SINE Alu 2 139 -8 3 1135 261 226 97 0 chr12 72127809 72127871 -49129659 + ID4 SINE ID 9 76 -7 3 1135 222 282 28 14 chr12 72127962 72128034 -49129496 - PB1D7 SINE Alu -8 112 40 3 1135 258 156 0 0 chr12 72128284 72128329 -49129201 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1135 752 283 116 50 chr12 72128329 72129019 -49128511 - Lx9 LINE L1 -1731 5913 5170 3 1135 292 279 140 15 chr12 72129018 72129218 -49128312 - L1M2 LINE L1 -1663 4480 4256 3 1135 237 284 63 0 chr12 72129755 72129850 -49127680 + L1MB1 LINE L1 4899 4999 -1144 3 1135 881 127 18 37 chr12 72130039 72130151 -49127379 + URR1B DNA MER1_type 65 179 -46 3 1135 3592 8 5 0 chr12 72130151 72130545 -49126985 - MTA_Mm LTR MaLR 0 396 1 3 1135 881 127 18 37 chr12 72130545 72130596 -49126934 + URR1B DNA MER1_type 180 225 0 3 1135 871 237 38 24 chr12 72130642 72130854 -49126676 - B3 SINE B2 -1 215 1 3 1135 991 186 50 35 chr12 72130993 72131194 -49126336 - B3 SINE B2 -12 204 1 3 1135 412 342 76 5 chr12 72131456 72131641 -49125889 + L1MB1 LINE L1 5403 5600 -697 3 1135 506 118 42 31 chr12 72131641 72131737 -49125793 - PB1D10 SINE Alu -13 104 8 3 1135 366 355 78 21 chr12 72131749 72132164 -49125366 + L1MB1 LINE L1 5602 6032 -268 3 1135 313 208 213 16 chr12 72132243 72132370 -49125160 + L1MA8 LINE L1 6127 6278 -13 3 1135 1038 110 14 0 chr12 72132393 72132539 -49124991 - B1_Mur4 SINE Alu -1 149 2 3 1135 261 146 0 0 chr12 72132646 72132694 -49124836 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1135 210 71 0 0 chr12 72133074 72133102 -49124428 + (CATTA)n Simple_repeat Simple_repeat 2 29 0 3 1135 358 208 139 0 chr12 72133411 72133512 -49124018 - PB1D7 SINE Alu -5 115 1 3 1135 506 208 15 2 chr12 72133677 72133788 -49123742 - B1_Mur1 SINE Alu -6 144 30 3 1135 1011 208 19 5 chr12 72133885 72134093 -49123437 + B3 SINE B2 1 211 -5 3 1135 826 248 14 47 chr12 72134362 72134574 -49122956 - B3 SINE B2 -11 205 1 3 1135 414 0 0 0 chr12 72134637 72134683 -49122847 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1135 369 0 0 0 chr12 72134683 72134723 -49122807 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1135 507 259 7 61 chr12 72134723 72134871 -49122659 - B1_Mur2 SINE Alu -9 140 1 3 1135 236 232 18 0 chr12 72135046 72135102 -49122428 - ID4 SINE ID -13 70 14 3 1135 272 301 0 0 chr12 72135244 72135317 -49122213 - PB1D10 SINE Alu -34 83 11 3 1135 645 204 6 81 chr12 72135638 72135798 -49121732 + B1_Mur3 SINE Alu 2 149 0 3 1135 822 185 15 0 chr12 72135842 72135977 -49121553 - B1_Mus2 SINE Alu -7 140 4 3 1135 256 306 0 45 chr12 72136079 72136168 -49121362 - PB1D7 SINE Alu -3 117 33 3 1135 23 86 0 0 chr12 72136391 72136449 -49121081 + AT_rich Low_complexity Low_complexity 1 58 0 3 1135 339 164 0 99 chr12 72136796 72136877 -49120653 - MTC-int LTR MaLR -727 531 459 3 1135 3366 218 81 8 chr12 72136864 72137805 -49119725 - ORR1B1-int LTR MaLR -495 1014 6 3 1135 1028 188 0 10 chr12 72137802 72138001 -49119529 - ORR1B1 LTR MaLR -197 197 1 3 1135 213 39 0 0 chr12 72138648 72138674 -49118856 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1135 760 184 44 0 chr12 72138674 72138810 -49118720 - B1_Mus1 SINE Alu -6 142 1 3 1135 309 258 84 23 chr12 72138813 72138944 -49118586 - L1MC4 LINE L1 -11 8031 7893 3 1135 511 335 7 13 chr12 72139708 72139859 -49117671 + RSINE1 SINE B4 4 153 -12 3 1135 183 42 0 0 chr12 72139862 72139886 -49117644 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1135 640 221 16 8 chr12 72141252 72141380 -49116150 - B1F SINE Alu -20 129 1 3 1135 295 324 0 43 chr12 72141485 72141601 -49115929 + PB1 SINE Alu 2 112 -15 3 1135 342 274 164 44 chr12 72141606 72141831 -49115699 + B4A SINE B4 1 252 -40 3 1135 180 0 0 0 chr12 72141995 72142015 -49115515 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1135 1143 62 0 0 chr12 72142015 72142159 -49115371 - B1_Mus1 SINE Alu 0 148 5 3 1135 1010 128 22 50 chr12 72142224 72142405 -49115125 - B2_Mm2 SINE B2 -19 176 1 3 1135 1211 73 77 17 chr12 72142408 72142589 -49114941 - B2_Mm2 SINE B2 -2 193 2 3 1135 374 225 0 0 chr12 72142599 72142679 -49114851 - ID_B1 SINE B4 -1 223 144 3 1135 864 156 30 0 chr12 72142950 72143085 -49114445 + B1_Mus2 SINE Alu 1 139 -8 3 1135 294 244 0 49 chr12 72143901 72143983 -49113547 + MT2B LTR ERVL 163 240 -361 3 1135 477 192 91 0 chr12 72143913 72144012 -49113518 + PB1D9 SINE Alu 7 114 -6 3 1135 420 111 0 0 chr12 72144012 72144075 -49113455 + (TAAG)n Simple_repeat Simple_repeat 1 63 0 3 1135 683 225 0 35 chr12 72144656 72144799 -49112731 + B1_Mur1 SINE Alu 12 149 0 3 1135 319 237 32 21 chr12 72144835 72144930 -49112600 + ID_B1 SINE B4 129 224 0 3 1135 364 298 62 34 chr12 72144984 72145130 -49112400 + RSINE1 SINE B4 3 152 -13 3 1135 21 57 0 0 chr12 72145205 72145240 -49112290 + AT_rich Low_complexity Low_complexity 1 35 0 3 1135 685 251 73 5 chr12 72145413 72145605 -49111925 - B3 SINE B2 -11 205 1 3 1135 469 234 15 38 chr12 72145639 72145772 -49111758 + RSINE1 SINE B4 2 131 -34 3 1135 24 67 0 0 chr12 72146281 72146326 -49111204 + AT_rich Low_complexity Low_complexity 1 45 0 3 1135 1638 47 0 0 chr12 72146738 72146930 -49110600 - B2_Mm1t SINE B2 -1 192 1 3 1135 592 205 86 0 chr12 72147542 72147659 -49109871 - B1_Mur2 SINE Alu -20 129 3 3 1135 734 161 156 31 chr12 72147679 72147871 -49109659 + B3 SINE B2 1 216 0 3 1135 274 175 0 0 chr12 72147936 72147994 -49109536 + B1F SINE Alu 56 138 -11 3 1135 205 294 0 0 chr12 72148293 72148344 -49109186 + GA-rich Low_complexity Low_complexity 2 52 0 3 1135 252 0 0 0 chr12 72148363 72148391 -49109139 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1135 222 208 110 14 chr12 72148657 72148730 -49108800 - MIRb SINE MIR -138 130 51 3 1135 690 244 23 55 chr12 72152042 72152259 -49105271 + B3 SINE B2 2 211 -5 3 1135 1115 130 54 0 chr12 72152265 72152449 -49105081 - B2_Mm2 SINE B2 -1 194 1 3 1135 479 167 230 11 chr12 72152597 72152758 -49104772 - B3 SINE B2 -15 201 6 3 1135 668 202 137 0 chr12 72152847 72152971 -49104559 + B1_Mur4 SINE Alu 1 141 -9 3 1135 261 0 0 0 chr12 72152971 72153000 -49104530 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1135 21 36 0 0 chr12 72153016 72153044 -49104486 + AT_rich Low_complexity Low_complexity 1 28 0 3 1135 270 0 0 0 chr12 72153638 72153668 -49103862 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 3 1135 399 324 107 18 chr12 72153838 72154332 -49103198 + L2 LINE L2 2300 2837 -582 3 1135 283 244 12 47 chr12 72154613 72154699 -49102831 - RSINE1 SINE B4 -82 83 1 3 1135 211 244 107 71 chr12 72154697 72154729 -49102801 - PB1D10 SINE Alu -3 114 28 4 1135 245 192 115 0 chr12 72154729 72154781 -49102749 - ID_B1 SINE B4 -58 166 109 4 1135 188 34 0 33 chr12 72154848 72154878 -49102652 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1135 432 288 8 0 chr12 72154941 72155059 -49102471 - PB1 SINE Alu -7 120 2 4 1135 840 269 29 0 chr12 72155082 72155290 -49102240 - B3 SINE B2 0 216 3 4 1135 1337 92 16 0 chr12 72155308 72155492 -49102038 + B2_Mm2 SINE B2 2 188 -7 4 1135 591 162 51 0 chr12 72155509 72155626 -49101904 + B3 SINE B2 7 129 -87 4 1135 4525 43 0 7 chr12 72155907 72156451 -49101079 - L1Md_F2 LINE L1 0 6582 6043 4 1135 285 29 0 0 chr12 72156518 72156552 -49100978 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1135 471 35 0 0 chr12 72156984 72157041 -49100489 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1135 308 238 38 0 chr12 72157379 72157459 -49100071 + B1F SINE Alu 1 83 -66 4 1135 215 286 143 0 chr12 72157561 72157631 -49099899 + B1F1 SINE Alu 12 91 -58 4 1135 706 48 0 19 chr12 72158091 72158196 -49099334 + (TCC)n Simple_repeat Simple_repeat 1 103 0 4 1135 28 0 0 0 chr12 72159399 72159427 -49098103 + AT_rich Low_complexity Low_complexity 1 28 0 4 1135 495 189 32 0 chr12 72159430 72159525 -49098005 - B1_Mur2 SINE Alu -4 145 48 4 1135 226 265 0 56 chr12 72159473 72159545 -49097985 - RLTR25B LTR ERVK -531 497 430 4 1135 389 273 73 24 chr12 72159839 72159963 -49097567 + ID_B1 SINE B4 93 222 -2 4 1135 633 256 31 19 chr12 72160021 72160180 -49097350 - RSINE1 SINE B4 -2 163 3 4 1135 180 0 0 0 chr12 72160502 72160522 -49097008 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1135 935 137 43 27 chr12 72161340 72161527 -49096003 + B2_Mm2 SINE B2 2 191 -4 4 1135 802 60 8 8 chr12 72161573 72161690 -49095840 - B2_Mm2 SINE B2 -23 172 56 4 1135 885 197 13 80 chr12 72162639 72162876 -49094654 + RMER1B Other Other 835 1055 -11 4 1135 525 172 87 39 chr12 72162877 72163004 -49094526 + B1_Mus1 SINE Alu 1 133 -15 4 1135 681 33 11 0 chr12 72163005 72163095 -49094435 + B1_Mus2 SINE Alu 50 140 -7 4 1135 594 0 0 0 chr12 72163098 72163164 -49094366 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1135 1413 152 0 9 chr12 72163438 72163664 -49093866 - URR1A DNA MER1_type 0 226 3 4 1135 1189 135 0 10 chr12 72163674 72163868 -49093662 - URR1A DNA MER1_type -32 194 3 4 1135 219 69 0 0 chr12 72164538 72164567 -49092963 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1135 266 326 40 40 chr12 72164746 72164896 -49092634 + L2a LINE L2 3273 3422 -4 4 1135 579 209 109 22 chr12 72165154 72165291 -49092239 - B1_Mur2 SINE Alu 0 149 1 4 1135 918 259 0 48 chr12 72165354 72165581 -49091949 - B3 SINE B2 0 216 1 4 1135 512 277 8 15 chr12 72165656 72165788 -49091742 - ID_B1 SINE B4 -9 215 85 4 1135 300 27 0 0 chr12 72165802 72165839 -49091691 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1135 346 314 67 115 chr12 72165888 72166061 -49091469 - B4A SINE B4 -35 257 95 4 1135 1591 52 0 0 chr12 72166061 72166253 -49091277 - B2_Mm1a SINE B2 0 193 2 4 1135 346 314 67 115 chr12 72166253 72166349 -49091181 - B4A SINE B4 -198 94 1 4 1135 198 118 0 0 chr12 72166564 72166598 -49090932 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 4 1135 764 265 22 0 chr12 72166598 72166783 -49090747 - B3A SINE B2 -8 190 2 4 1135 1396 71 16 37 chr12 72166855 72166871 -49090659 - B2_Mm2 SINE B2 -8 187 176 4 1135 1054 86 29 0 chr12 72166871 72167010 -49090520 + B1_Mm SINE Alu 2 144 -3 4 1135 597 28 0 0 chr12 72167011 72167082 -49090448 + (GAAAA)n Simple_repeat Simple_repeat 3 73 0 4 1135 1396 71 16 37 chr12 72167082 72167254 -49090276 - B2_Mm2 SINE B2 -20 175 1 4 1135 495 196 124 48 chr12 72167412 72167557 -49089973 - RSINE1 SINE B4 -6 159 4 4 1135 243 0 0 0 chr12 72170270 72170297 -49087233 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1135 1259 34 0 0 chr12 72170297 72170444 -49087086 - B1_Mus2 SINE Alu 0 147 1 4 1135 567 43 0 0 chr12 72170628 72170698 -49086832 + (TCC)n Simple_repeat Simple_repeat 1 70 0 4 1135 1177 214 78 9 chr12 72171354 72171674 -49085856 - MER90a LTR ERV1 -124 490 149 4 1135 22 35 0 0 chr12 72171992 72172021 -49085509 + AT_rich Low_complexity Low_complexity 1 29 0 4 1135 770 192 0 20 chr12 72172507 72172656 -49084874 - B1_Mur4 SINE Alu 0 150 5 4 1135 432 82 0 0 chr12 72172690 72172751 -49084779 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1135 414 258 112 86 chr12 72172938 72173286 -49084244 - L1MC1 LINE L1 -8 6325 5969 4 1135 490 188 57 57 chr12 72174972 72175113 -49082417 + B1_Mur1 SINE Alu 8 148 -1 4 1135 412 58 189 0 chr12 72175319 72175422 -49082108 - B2_Mm2 SINE B2 -7 188 46 4 1135 687 157 36 43 chr12 72175592 72175732 -49081798 - B1_Mus2 SINE Alu -1 146 8 4 1135 1348 68 5 54 chr12 72177135 72177338 -49080192 + B2_Mm1a SINE B2 1 193 0 4 1135 342 67 0 0 chr12 72177713 72177758 -49079772 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1135 317 323 59 22 chr12 72177793 72177929 -49079601 - RSINE1 SINE B4 0 165 25 4 1135 4542 12 0 0 chr12 72178136 72178629 -49078901 + MT2_Mm LTR ERVL 1 493 0 4 1135 48248 17 6 0 chr12 72178629 72183955 -49073575 + MERVL-int LTR ERVL 1 5360 -125 4 1135 362 167 46 35 chr12 72183955 72184042 -49073488 + ORR1A3-int LTR MaLR 553 640 -1323 4 1135 321 0 0 0 chr12 72184042 72184080 -49073450 + MERVL-int LTR ERVL 5448 5485 0 4 1135 4542 12 0 0 chr12 72184080 72184573 -49072957 + MT2_Mm LTR ERVL 1 493 0 4 1135 1054 211 5 18 chr12 72184608 72184825 -49072705 - B3 SINE B2 0 216 3 4 1135 308 270 35 101 chr12 72185205 72185374 -49072156 + B4A SINE B4 4 161 -131 4 1135 555 315 12 0 chr12 72185675 72185837 -49071693 + B4 SINE B4 123 286 -6 4 1135 228 35 0 0 chr12 72185841 72185870 -49071660 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1135 233 241 18 18 chr12 72186201 72186256 -49071274 + RSINE1 SINE B4 2 56 -109 4 1135 349 248 147 0 chr12 72186583 72186692 -49070838 + B1F SINE Alu 18 142 -7 4 1135 278 156 16 0 chr12 72186924 72186988 -49070542 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1135 409 255 203 7 chr12 72186989 72187127 -49070403 - RSINE1 SINE B4 0 165 1 4 1135 246 156 0 0 chr12 72187215 72187279 -49070251 + T-rich Low_complexity Low_complexity 1 64 0 4 1135 1090 76 14 14 chr12 72187837 72187984 -49069546 + B1_Mus1 SINE Alu 2 148 0 4 1135 403 216 23 0 chr12 72188024 72188112 -49069418 + PB1D10 SINE Alu 2 91 -26 4 1135 296 310 47 53 chr12 72196970 72196998 -49060532 + B1F SINE Alu 1 147 0 4 1135 353 333 8 0 chr12 72196998 72197118 -49060412 + ID_B1 SINE B4 104 224 0 4 1135 256 160 0 0 chr12 72197277 72197327 -49060203 + B1_Mur4 SINE Alu 1 50 -100 4 1135 1200 69 0 0 chr12 72197699 72197844 -49059686 + B1_Mm SINE Alu 3 147 0 4 1135 210 203 75 45 chr12 72197898 72197965 -49059565 + ID SINE ID 3 71 -153 4 1135 549 219 34 0 chr12 72198284 72198403 -49059127 + ID_B1 SINE B4 102 224 0 4 1135 201 74 0 0 chr12 72198818 72198845 -49058685 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 4 1135 189 94 0 0 chr12 72199046 72199078 -49058452 + (TTA)n Simple_repeat Simple_repeat 1 32 0 4 1135 29 47 0 0 chr12 72199531 72199574 -49057956 + AT_rich Low_complexity Low_complexity 1 43 0 4 1135 1655 26 11 0 chr12 72200363 72200554 -49056976 - B2_Mm1a SINE B2 0 193 1 4 1135 3155 52 23 0 chr12 72200641 72201242 -49056288 - MTA_Mm-int LTR MaLR -1366 426 1 4 1135 1354 85 15 5 chr12 72201242 72201426 -49056104 + ORR1A0 LTR MaLR 161 346 0 4 1135 1098 75 32 70 chr12 72202211 72202397 -49055133 + B2_Mm1t SINE B2 1 179 -14 4 1135 339 97 321 9 chr12 72202443 72202555 -49054975 + B2_Mm2 SINE B2 47 193 -2 4 1135 24 0 0 0 chr12 72202582 72202606 -49054924 + AT_rich Low_complexity Low_complexity 1 24 0 4 1135 207 0 0 0 chr12 72202802 72202825 -49054705 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1135 377 250 89 0 chr12 72202835 72202947 -49054583 - B1F SINE Alu -8 141 20 4 1135 396 0 0 0 chr12 72203365 72203409 -49054121 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1135 1398 43 29 88 chr12 72203549 72203719 -49053811 + B2_Mm1t SINE B2 1 160 -33 4 1135 189 0 0 0 chr12 72203719 72203740 -49053790 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 4 1135 1226 28 14 0 chr12 72203745 72203890 -49053640 - B1_Mm SINE Alu 0 147 1 4 1135 1398 43 29 88 chr12 72203890 72203917 -49053613 + B2_Mm1t SINE B2 161 192 -1 4 1135 1124 77 0 0 chr12 72204234 72204377 -49053153 + B1_Mus1 SINE Alu 5 147 -1 4 1135 1350 77 33 0 chr12 72204848 72205029 -49052501 + B2_Mm2 SINE B2 2 188 -7 4 1135 319 314 92 8 chr12 72205029 72205148 -49052382 + RSINE1 SINE B4 4 132 -33 4 1135 1679 26 0 10 chr12 72205240 72205434 -49052096 - B2_Mm1t SINE B2 -1 192 1 4 1135 700 79 0 10 chr12 72206271 72206373 -49051157 - B2_Mm2 SINE B2 -50 145 45 4 1135 276 272 24 36 chr12 72206391 72206475 -49051055 + ID4_ SINE ID 1 83 0 4 1135 381 43 0 0 chr12 72206702 72206749 -49050781 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1135 546 206 0 0 chr12 72207098 72207428 -49050102 + CT-rich Low_complexity Low_complexity 1 330 0 4 1135 288 119 66 33 chr12 72207812 72207873 -49049657 - ORR1A4 LTR MaLR -266 63 1 4 1135 800 211 27 104 chr12 72208124 72208383 -49049147 + RMER1B Other Other 153 391 -675 4 1135 2250 141 115 63 chr12 72208392 72208854 -49048676 + RMER1B Other Other 577 1062 -4 4 1135 414 161 0 22 chr12 72208924 72209013 -49048517 - URR1B DNA MER1_type 0 225 139 4 1135 404 105 297 34 chr12 72209008 72209126 -49048404 - B2_Mm2 SINE B2 0 195 47 4 1135 1318 97 11 0 chr12 72209194 72209370 -49048160 - B2_Mm1t SINE B2 -14 179 2 4 1135 320 162 24 24 chr12 72209370 72209452 -49048078 - URR1B DNA MER1_type -71 154 73 4 1135 1293 87 38 5 chr12 72209617 72209803 -49047727 - B2_Mm2 SINE B2 -3 192 1 5 1135 1220 62 0 0 chr12 72209874 72210020 -49047510 + B1_Mm SINE Alu 2 147 0 5 1135 255 200 0 191 chr12 72210100 72210236 -49047294 + URR1B DNA MER1_type 107 216 -9 5 1135 331 205 12 25 chr12 72210659 72210739 -49046791 + B4A SINE B4 1 79 -213 5 1135 1781 157 144 5 chr12 72210729 72211139 -49046391 + RMER15 LTR ERVL 109 575 0 5 1135 232 207 17 0 chr12 72211414 72211472 -49046058 + PB1D10 SINE Alu 33 91 -26 5 1135 1118 56 0 14 chr12 72211493 72211639 -49045891 + B1_Mus1 SINE Alu 3 146 -2 5 1135 711 274 65 10 chr12 72211682 72211881 -49045649 + B3 SINE B2 7 216 0 5 1135 493 69 184 64 chr12 72211881 72211990 -49045540 + B1_Mus2 SINE Alu 24 145 -2 5 1135 1162 178 5 14 chr12 72212892 72213103 -49044427 + B3 SINE B2 5 213 -3 5 1135 257 182 110 0 chr12 72213137 72213216 -49044314 + PB1D10 SINE Alu 1 89 -60 5 1135 329 292 57 0 chr12 72213426 72213532 -49043998 - RSINE1 SINE B4 -26 139 28 5 1135 710 245 70 20 chr12 72213581 72213781 -49043749 - B3 SINE B2 -5 211 2 5 1135 263 322 73 16 chr12 72214212 72214335 -49043195 - MLT1G3 LTR MaLR -225 370 241 5 1135 342 0 0 0 chr12 72214842 72214880 -49042650 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1135 1141 89 0 0 chr12 72215674 72215820 -49041710 + B1_Mus2 SINE Alu 2 147 0 5 1135 1409 60 59 11 chr12 72215933 72216119 -49041411 - B2_Mm2 SINE B2 0 195 1 5 1135 1006 122 14 0 chr12 72216124 72216271 -49041259 - B1_Mur4 SINE Alu -1 149 1 5 1135 222 118 0 0 chr12 72216288 72216322 -49041208 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1135 764 222 12 6 chr12 72216323 72216486 -49041044 - B3A SINE B2 -34 164 1 5 1135 476 175 13 23 chr12 72216673 72216775 -49040755 + PB1D10 SINE Alu 1 104 -13 5 1135 282 212 0 70 chr12 72216868 72216939 -49040591 + PB1D9 SINE Alu 1 66 -54 5 1135 647 139 26 9 chr12 72216958 72217074 -49040456 + B3 SINE B2 2 119 -97 5 1135 383 269 0 0 chr12 72217105 72217183 -49040347 + B4 SINE B4 215 292 0 5 1135 231 282 34 45 chr12 72218006 72218095 -49039435 - PB1D9 SINE Alu -2 118 31 5 1135 459 180 9 18 chr12 72218114 72218227 -49039303 + CT-rich Low_complexity Low_complexity 3 114 0 5 1135 1146 54 7 20 chr12 72218238 72218388 -49039142 - B1_Mus1 SINE Alu 0 148 1 5 1135 308 289 86 32 chr12 72218655 72218748 -49038782 + B1F2 SINE Alu 1 98 -51 5 1135 310 276 104 9 chr12 72218865 72218971 -49038559 + PB1D7 SINE Alu 5 120 0 5 1135 726 201 43 0 chr12 72218989 72219128 -49038402 + B1_Mur2 SINE Alu 2 146 -3 5 1135 690 13 0 0 chr12 72219487 72219566 -49037964 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 5 1135 348 24 0 0 chr12 72219566 72219607 -49037923 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1135 1155 55 14 0 chr12 72219608 72219754 -49037776 - B1_Mus1 SINE Alu 0 148 1 5 1135 464 215 84 42 chr12 72219756 72219915 -49037615 - B3 SINE B2 -3 192 35 5 1135 21 36 0 0 chr12 72219948 72219976 -49037554 + AT_rich Low_complexity Low_complexity 1 28 0 5 1135 460 180 80 0 chr12 72220258 72220358 -49037172 - B1_Mus2 SINE Alu -23 124 17 5 1135 316 156 195 0 chr12 72220381 72220458 -49037072 - PB1D9 SINE Alu -6 114 23 5 141 808 210 113 0 chr12 72220540 72220726 -49036804 + B3 SINE B2 1 207 -9 5 1136 1005 43 0 164 chr12 72221251 72221416 -49036114 + B1_Mus1 SINE Alu 2 139 -9 5 1136 198 0 0 0 chr12 72221416 72221438 -49036092 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1136 240 231 0 0 chr12 72221773 72221824 -49035706 + PB1D9 SINE Alu 67 122 -5 5 1136 922 154 194 0 chr12 72221837 72222012 -49035518 + B3 SINE B2 2 210 -6 5 1136 362 133 53 13 chr12 72222301 72222377 -49035153 - B1_Mus2 SINE Alu 0 147 69 5 1136 321 236 21 43 chr12 72222485 72222578 -49034952 + B3A SINE B2 28 118 -80 5 1136 234 265 0 0 chr12 72222662 72222711 -49034819 + B3 SINE B2 101 149 -67 5 1136 450 0 0 0 chr12 72222713 72222763 -49034767 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1136 1134 81 0 0 chr12 72223440 72223588 -49033942 + B1_Mus1 SINE Alu 1 148 0 5 1136 381 266 55 55 chr12 72223684 72223847 -49033683 - RSINE1 SINE B4 0 165 3 5 1136 327 244 24 12 chr12 72225091 72225174 -49032356 - PB1D10 SINE Alu -2 115 32 5 1136 253 276 40 0 chr12 72225214 72225290 -49032240 + Lx8 LINE L1 5842 5920 -1553 5 1136 565 115 230 0 chr12 72226092 72226205 -49031325 + B1_Mus1 SINE Alu 10 148 0 5 1136 339 336 9 17 chr12 72226740 72226855 -49030675 + PB1 SINE Alu 7 120 -7 5 1136 238 324 127 0 chr12 72226955 72227026 -49030504 - PB1D10 SINE Alu -26 91 12 5 1136 659 150 47 101 chr12 72227140 72227288 -49030242 - B1_Mur2 SINE Alu -9 140 1 5 1136 907 153 0 26 chr12 72227471 72227625 -49029905 - B1_Mur4 SINE Alu 0 150 1 5 1136 1281 94 0 63 chr12 72227880 72228085 -49029445 - B2_Mm2 SINE B2 -3 192 1 5 1136 661 147 0 0 chr12 72228281 72228390 -49029140 - B3 SINE B2 -105 111 3 5 1136 1263 116 11 0 chr12 72228402 72228591 -49028939 - B2_Mm1t SINE B2 -1 192 2 5 1136 498 184 9 28 chr12 72228629 72228735 -49028795 - B3 SINE B2 -112 104 1 5 1136 318 337 95 52 chr12 72229219 72229519 -49028011 + L1MDa LINE L1 28 340 -6293 5 1136 1438 59 27 0 chr12 72229519 72229706 -49027824 - B2_Mm1a SINE B2 0 193 2 5 1136 318 337 95 52 chr12 72229706 72229752 -49027778 + L1MDa LINE L1 341 389 -6244 5 1136 397 229 31 0 chr12 72230050 72230146 -49027384 + L1MDa LINE L1 1612 1710 -4923 5 1136 322 261 0 52 chr12 72230171 72230268 -49027262 - PB1D10 SINE Alu 0 117 26 5 1136 295 166 0 116 chr12 72230353 72230434 -49027096 + PB1D10 SINE Alu 25 97 -23 5 1136 351 299 39 22 chr12 72230785 72231042 -49026488 + Lx7 LINE L1 7280 7696 0 5 1136 538 271 154 15 chr12 72231019 72231292 -49026238 + L1MDa LINE L1 4846 5156 -1381 5 1136 394 259 46 0 chr12 72231347 72231455 -49026075 - B1_Mur1 SINE Alu -36 113 1 5 1136 405 293 8 39 chr12 72231838 72231966 -49025564 + B3A SINE B2 58 181 -17 5 1136 570 252 0 0 chr12 72232416 72232535 -49024995 - ID_B1 SINE B4 -20 204 86 5 1136 798 254 0 12 chr12 72232586 72232757 -49024773 - B3A SINE B2 -28 170 2 5 1136 1456 59 5 16 chr12 72233144 72233333 -49024197 - B2_Mm2 SINE B2 -7 188 2 5 1136 379 157 48 12 chr12 72233342 72233426 -49024104 - PB1D9 SINE Alu 0 120 34 5 1136 284 223 254 18 chr12 72234122 72234236 -49023294 - B1F SINE Alu -8 141 1 5 1136 1714 172 56 16 chr12 72234280 72234721 -49022809 + RLTR12B LTR ERVK 1 505 -23 5 1136 374 174 12 99 chr12 72234864 72235004 -49022526 + B1_Mus2 SINE Alu 1 119 -1 5 1136 706 182 27 20 chr12 72235594 72235740 -49021790 + B1_Mus1 SINE Alu 1 147 -1 5 1136 411 293 93 20 chr12 72235775 72235925 -49021605 + B3 SINE B2 27 187 -29 5 1136 243 200 73 0 chr12 72235917 72235972 -49021558 + ID_B1 SINE B4 76 134 -90 5 1136 339 143 63 0 chr12 72235931 72235994 -49021536 + B1_Mus1 SINE Alu 10 76 -72 5 1136 264 287 21 0 chr12 72236177 72236271 -49021259 + L1MC4 LINE L1 7821 7916 -126 5 1136 25 31 0 0 chr12 72236431 72236463 -49021067 + AT_rich Low_complexity Low_complexity 1 32 0 5 1136 225 178 0 0 chr12 72236526 72236571 -49020959 + CT-rich Low_complexity Low_complexity 4 48 0 5 1136 292 132 60 0 chr12 72236576 72236635 -49020895 - B1_Mur4 SINE Alu -6 141 78 5 1136 199 100 0 0 chr12 72236932 72236962 -49020568 + MIR3 SINE MIR 162 191 -17 5 1136 492 18 0 0 chr12 72239069 72239126 -49018404 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1136 1156 56 0 0 chr12 72239126 72239264 -49018266 - B1_Mus1 SINE Alu -4 144 7 5 1136 271 68 0 20 chr12 72239455 72239504 -49018026 - PB1D9 SINE Alu -90 59 15 5 1136 428 186 155 0 chr12 72239547 72239644 -49017886 - PB1D9 SINE Alu -8 112 1 5 1136 450 269 71 60 chr12 72239736 72239918 -49017612 - B3A SINE B2 -14 184 1 5 1136 497 324 7 0 chr12 72239947 72240092 -49017438 - B1_Mur1 SINE Alu 0 149 4 5 1136 1435 58 26 16 chr12 72240421 72240613 -49016917 - B2_Mm2 SINE B2 0 195 2 5 1136 426 358 24 0 chr12 72240831 72240954 -49016576 - RSINE1 SINE B4 -38 127 2 5 1136 237 266 196 29 chr12 72241150 72241390 -49016140 - B4A SINE B4 -10 282 3 5 1136 511 204 72 30 chr12 72242093 72242260 -49015270 - L1MB3 LINE L1 -189 5994 5821 5 1136 1016 225 14 5 chr12 72242298 72242508 -49015022 - B3 SINE B2 -3 213 2 5 1136 228 273 106 0 chr12 72242550 72242616 -49014914 - ID4 SINE ID -10 73 1 5 1136 356 286 0 20 chr12 72242748 72242848 -49014682 - B1F2 SINE Alu -21 128 31 5 1136 387 244 0 68 chr12 72242887 72242975 -49014555 - ID4 SINE ID 0 83 2 5 1136 196 267 64 73 chr12 72243792 72243901 -49013629 + MIRc SINE MIR 38 145 -123 5 1136 258 200 84 14 chr12 72244326 72244397 -49013133 - ID4_ SINE ID 0 83 8 5 1136 758 230 149 16 chr12 72244450 72244826 -49012704 + L1MA7 LINE L1 5873 6312 0 5 1136 5265 226 139 46 chr12 72244861 72244956 -49012574 - Lx9 LINE L1 -2 7642 7548 5 1136 1533 58 11 0 chr12 72244956 72245147 -49012383 - B2_Mm2 SINE B2 0 195 3 5 1136 5265 213 124 51 chr12 72245147 72247056 -49010474 - Lx9 LINE L1 -97 7547 5443 5 1136 2428 200 165 38 chr12 72247174 72247885 -49009645 - Lx9 LINE L1 -6364 1244 444 5 1136 394 245 140 20 chr12 72247967 72248117 -49009413 - L1_Rod LINE L1 -6942 230 63 6 1136 180 0 0 0 chr12 72248443 72248463 -49009067 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 6 1136 1116 99 0 0 chr12 72248465 72248606 -49008924 - B1_Mus2 SINE Alu -6 141 1 6 1136 818 216 61 20 chr12 72248705 72248903 -49008627 - B3 SINE B2 -10 206 1 6 1136 423 278 17 0 chr12 72248942 72249057 -49008473 + B3A SINE B2 1 117 -81 6 1136 567 247 109 0 chr12 72249939 72250113 -49007417 - ID_B1 SINE B4 -26 198 6 6 1136 538 272 72 30 chr12 72251661 72251828 -49005702 - B4A SINE B4 -4 288 115 6 1136 279 0 0 0 chr12 72251859 72251890 -49005640 + (CTCG)n Simple_repeat Simple_repeat 4 34 0 6 1136 620 164 102 22 chr12 72252353 72252490 -49005040 - B1_Mus1 SINE Alu 0 148 1 6 1136 237 33 0 0 chr12 72252512 72252542 -49004988 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 6 1136 341 340 110 15 chr12 72252552 72252815 -49004715 - B4A SINE B4 0 292 5 6 1136 1152 78 0 0 chr12 72253206 72253360 -49004170 + B2_Mm2 SINE B2 3 156 -39 6 1136 267 31 0 0 chr12 72253365 72253397 -49004133 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 6 1136 514 271 102 34 chr12 72254399 72254575 -49002955 + B3 SINE B2 2 189 -27 6 1136 422 197 169 23 chr12 72254576 72254658 -49002872 + B3 SINE B2 68 163 -53 6 1136 369 0 0 0 chr12 72254658 72254699 -49002831 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1136 422 197 169 23 chr12 72254699 72254746 -49002784 + B3 SINE B2 164 215 -1 6 1136 548 225 85 0 chr12 72254900 72255029 -49002501 - B1_Mur1 SINE Alu -5 144 5 6 1136 301 217 268 18 chr12 72255060 72255224 -49002306 - B4 SINE B4 -64 228 24 6 1136 496 149 35 0 chr12 72255267 72255354 -49002176 - B1_Mur2 SINE Alu -7 142 53 6 1136 1593 57 0 5 chr12 72255370 72255565 -49001965 - B2_Mm2 SINE B2 0 195 2 6 1136 468 0 0 0 chr12 72255613 72255665 -49001865 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1136 1250 248 47 26 chr12 72255939 72256283 -49001247 - ORR1E LTR MaLR -7 352 2 6 1136 339 207 74 83 chr12 72256316 72256437 -49001093 - PB1D7 SINE Alu 0 120 1 6 1136 1193 42 14 0 chr12 72256585 72256728 -49000802 - B1_Mm SINE Alu 0 147 3 6 1136 276 167 83 150 chr12 72257212 72257229 -49000301 + MT2B LTR ERVL 153 161 -440 6 1136 573 194 12 117 chr12 72257229 72257392 -49000138 + B1_Mus2 SINE Alu 1 146 -1 6 1136 329 292 112 129 chr12 72257526 72257877 -48999653 - MLT1A1 LTR MaLR 0 365 20 6 1136 231 273 115 15 chr12 72258335 72258465 -48999065 - L1M4 LINE L1 -5616 926 784 6 1136 497 198 73 28 chr12 72258867 72258976 -48998554 + PB1D9 SINE Alu 1 114 -6 6 1136 1959 93 90 22 chr12 72259227 72259785 -48997745 - RMER6A LTR ERVK -123 633 1 6 1136 483 246 61 8 chr12 72259991 72260122 -48997408 + ID_B1 SINE B4 79 216 -8 6 1136 351 0 0 0 chr12 72260901 72260940 -48996590 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1136 424 311 43 18 chr12 72260942 72261106 -48996424 - B3A SINE B2 -27 171 4 6 1136 502 196 71 0 chr12 72261473 72261585 -48995945 - B3 SINE B2 -11 205 86 6 1136 1102 29 0 0 chr12 72261687 72261826 -48995704 - B1_Mm SINE Alu 0 147 9 6 1136 504 0 0 0 chr12 72262254 72262310 -48995220 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 6 1136 1209 73 85 0 chr12 72262313 72262478 -48995052 - B2_Mm1a SINE B2 -14 179 1 6 1136 660 131 41 0 chr12 72264244 72264366 -48993164 + URR1B DNA MER1_type 99 225 0 6 1136 704 132 41 112 chr12 72264638 72264808 -48992722 - B2_Mm2 SINE B2 -11 184 27 6 1136 404 82 345 26 chr12 72264803 72264916 -48992614 - B2_Mm2 SINE B2 0 195 47 6 1136 1151 89 12 0 chr12 72264951 72265119 -48992411 - B2_Mm1t SINE B2 -22 171 2 6 1136 261 150 0 0 chr12 72265119 72265159 -48992371 - B3 SINE B2 -175 41 2 6 1136 568 259 14 7 chr12 72266571 72266719 -48990811 - B1_Mur2 SINE Alu 0 149 1 6 1136 673 234 125 6 chr12 72266735 72266911 -48990619 - B3A SINE B2 0 198 2 6 1136 304 250 0 36 chr12 72266915 72266998 -48990532 - PB1D9 SINE Alu 0 120 41 6 1136 194 91 0 29 chr12 72267384 72267418 -48990112 + (TCC)n Simple_repeat Simple_repeat 2 34 0 6 1136 742 159 14 42 chr12 72267418 72267562 -48989968 - B1_Mus2 SINE Alu 0 149 10 6 1136 215 31 0 30 chr12 72267579 72267612 -48989918 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 6 1136 1153 62 0 7 chr12 72267613 72267759 -48989771 - B1_Mm SINE Alu -1 146 2 6 1136 382 256 92 28 chr12 72267767 72267908 -48989622 + MER58A DNA MER1_type 47 196 -28 6 1136 374 240 31 10 chr12 72268720 72268817 -48988713 - B3A SINE B2 -98 100 2 6 1136 744 239 38 19 chr12 72268836 72269045 -48988485 - B3 SINE B2 -2 214 2 6 1136 217 75 24 24 chr12 72269087 72269128 -48988402 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1136 255 61 0 0 chr12 72269154 72269187 -48988343 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1136 543 56 0 0 chr12 72269255 72269326 -48988204 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 6 1136 391 305 25 38 chr12 72269346 72269585 -48987945 - L1_Mur2 LINE L1 -589 5291 5053 6 1136 738 132 327 7 chr12 72269592 72269745 -48987785 + B3 SINE B2 1 202 -14 6 1136 513 47 0 0 chr12 72269805 72269869 -48987661 + (TCC)n Simple_repeat Simple_repeat 3 66 0 6 1136 1845 282 35 47 chr12 72269869 72270617 -48986913 - L1M2 LINE L1 -1098 5045 4307 6 1136 235 204 18 18 chr12 72270624 72270679 -48986851 - ID_B1 SINE B4 -11 213 159 6 1136 1007 106 12 30 chr12 72271937 72272103 -48985427 + B2_Mm2 SINE B2 1 163 -32 6 1136 240 35 0 0 chr12 72272104 72272133 -48985397 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 1136 492 311 0 29 chr12 72272136 72272272 -48985258 + B1F2 SINE Alu 11 142 -7 6 1136 319 286 21 42 chr12 72272588 72272683 -48984847 + ID_B1 SINE B4 112 204 -20 6 1136 745 226 14 0 chr12 72273622 72273768 -48983762 + B1_Mur4 SINE Alu 3 150 0 6 1136 312 27 0 0 chr12 72273771 72273808 -48983722 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 6 1136 458 239 82 9 chr12 72274302 72274412 -48983118 + B1_Mur2 SINE Alu 5 122 -27 6 1136 483 210 32 115 chr12 72274676 72274832 -48982698 - RSINE1 SINE B4 0 165 23 6 1136 252 247 0 99 chr12 72275053 72275134 -48982396 + PB1D9 SINE Alu 46 118 -2 6 1136 305 281 65 46 chr12 72275139 72275161 -48982369 + B4 SINE B4 68 91 -201 6 1136 460 211 25 50 chr12 72275161 72275281 -48982249 + B1_Mur2 SINE Alu 1 117 -32 6 1136 549 224 77 0 chr12 72275639 72275782 -48981748 - B3A SINE B2 -42 156 3 6 1136 419 268 75 44 chr12 72275822 72275982 -48981548 - RSINE1 SINE B4 0 165 1 6 1136 243 289 0 0 chr12 72276128 72276204 -48981326 + B3A SINE B2 5 80 -118 6 1136 479 268 28 21 chr12 72276138 72276279 -48981251 + RSINE1 SINE B4 16 157 -8 6 1136 324 297 45 9 chr12 72276360 72276472 -48981058 - B1F SINE Alu -21 128 13 6 1136 24 53 0 0 chr12 72276482 72276520 -48981010 + AT_rich Low_complexity Low_complexity 1 38 0 6 1136 798 216 0 7 chr12 72276521 72276670 -48980860 + B1_Mur4 SINE Alu 2 149 -1 6 1136 24 0 0 0 chr12 72276703 72276727 -48980803 + AT_rich Low_complexity Low_complexity 1 24 0 6 1136 381 219 79 61 chr12 72277533 72277672 -48979858 + B2_Mm2 SINE B2 1 145 -50 6 1136 333 0 0 0 chr12 72277672 72277709 -48979821 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1136 363 23 0 0 chr12 72277709 72277752 -48979778 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1136 381 219 79 61 chr12 72277752 72277776 -48979754 + B2_Mm2 SINE B2 146 167 -28 6 1136 407 240 90 32 chr12 72278036 72278191 -48979339 + L1MC5 LINE L1 7712 7875 -86 6 1136 29 0 0 0 chr12 72278473 72278502 -48979028 + AT_rich Low_complexity Low_complexity 1 29 0 6 1136 21 0 0 0 chr12 72279293 72279314 -48978216 + AT_rich Low_complexity Low_complexity 1 21 0 6 1136 25 31 0 0 chr12 72280335 72280367 -48977163 + AT_rich Low_complexity Low_complexity 1 32 0 6 1136 315 313 57 43 chr12 72280508 72280648 -48976882 - MTEa LTR MaLR -6 353 212 6 1136 875 282 36 9 chr12 72280718 72280940 -48976590 - MTEa LTR MaLR -124 255 28 6 1136 1620 247 228 111 chr12 72281311 72282031 -48975499 - RLTR22_Mus LTR ERVK -197 1611 699 6 1136 1114 76 13 40 chr12 72282031 72282182 -48975348 + B1_Mus1 SINE Alu 2 148 0 6 1136 1620 247 228 111 chr12 72282182 72282735 -48974795 - RLTR22_Mus LTR ERVK -1110 698 170 6 1136 1240 54 7 0 chr12 72282735 72282882 -48974648 - B1_Mus1 SINE Alu 0 148 1 6 1136 1620 247 228 111 chr12 72282882 72283049 -48974481 - RLTR22_Mus LTR ERVK -1639 169 1 6 1136 1070 191 116 14 chr12 72283051 72283327 -48974203 - Lx7 LINE L1 -533 7163 6860 6 1136 718 210 24 116 chr12 72283325 72283653 -48973877 + Lx7 LINE L1 5892 6189 -1507 6 1136 192 40 0 0 chr12 72283659 72283684 -48973846 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1136 678 281 19 0 chr12 72283687 72283847 -48973683 - RSINE1 SINE B4 0 165 3 6 1136 263 264 68 43 chr12 72283871 72284033 -48973497 - L1M4 LINE L1 -364 5815 5650 6 1136 253 311 0 13 chr12 72284236 72284311 -48973219 - ID4_ SINE ID -6 77 4 6 1136 303 298 39 0 chr12 72284389 72284493 -48973037 - L1M4 LINE L1 -1193 4953 4846 6 1136 1715 47 0 0 chr12 72284493 72284685 -48972845 + B2_Mm1t SINE B2 2 193 0 6 1136 22 0 0 0 chr12 72284731 72284753 -48972777 + AT_rich Low_complexity Low_complexity 1 22 0 6 1136 546 114 0 0 chr12 72285007 72285095 -48972435 + L1Md_F2 LINE L1 6495 6582 0 6 1136 282 29 0 0 chr12 72285671 72285706 -48971824 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1136 343 250 141 0 chr12 72285717 72285809 -48971721 - B1F SINE Alu -3 146 42 7 1136 477 0 0 0 chr12 72285940 72285993 -48971537 + (TTA)n Simple_repeat Simple_repeat 2 54 0 7 1136 332 217 0 14 chr12 72285993 72286063 -48971467 - ID_B1 SINE B4 -10 214 146 7 1136 218 330 37 46 chr12 72286063 72286101 -48971429 - PB1D10 SINE Alu -10 107 1 7 1136 201 74 0 0 chr12 72286105 72286132 -48971398 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1136 1031 206 67 0 chr12 72286281 72286475 -48971055 - B3 SINE B2 -8 208 2 7 1136 201 108 0 0 chr12 72287029 72287066 -48970464 + (CAT)n Simple_repeat Simple_repeat 3 39 0 7 1136 312 27 0 0 chr12 72287216 72287253 -48970277 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1136 297 128 0 0 chr12 72287985 72288032 -48969498 + (CAGT)n Simple_repeat Simple_repeat 1 47 0 7 1136 311 219 11 68 chr12 72288551 72288639 -48968891 - RSINE1 SINE B4 0 165 83 7 1136 1374 103 11 11 chr12 72289231 72289418 -48968112 - B2_Mm2 SINE B2 -8 187 1 7 1136 22 35 0 0 chr12 72290046 72290075 -48967455 + AT_rich Low_complexity Low_complexity 1 29 0 7 1136 626 241 8 0 chr12 72291389 72291522 -48966008 + B3 SINE B2 82 215 -1 7 1136 22 0 0 0 chr12 72292243 72292265 -48965265 + AT_rich Low_complexity Low_complexity 1 22 0 7 1136 189 211 0 0 chr12 72292425 72292482 -48965048 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 1136 780 267 5 26 chr12 72292503 72292695 -48964835 + B3A SINE B2 11 198 0 7 1136 1284 85 0 0 chr12 72294624 72294882 -48962648 + (TG)n Simple_repeat Simple_repeat 1 258 0 7 1136 358 283 86 40 chr12 72294981 72295132 -48962398 - RSINE1 SINE B4 -6 159 2 7 1136 1199 249 73 3 chr12 72295941 72296255 -48961275 + MER82 DNA MER2_type 2 337 -316 7 1136 225 83 0 0 chr12 72296321 72296357 -48961173 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 7 1136 302 343 182 10 chr12 72296405 72296614 -48960916 + MER82 DNA MER2_type 385 629 -24 7 1136 1500 246 23 37 chr12 72296667 72297021 -48960509 - MMAR1 DNA Mariner 0 1286 938 7 1136 276 250 71 64 chr12 72297233 72297374 -48960156 - RLTR15 LTR ERVK -177 182 41 7 1136 2716 269 52 52 chr12 72297545 72298392 -48959138 - MMAR1 DNA Mariner -413 873 27 7 1136 1239 82 0 0 chr12 72298403 72298549 -48958981 + B1_Mus2 SINE Alu 2 147 0 7 1136 716 56 0 0 chr12 72299062 72299151 -48958379 - B1_Mus2 SINE Alu 0 147 59 7 1136 299 368 191 0 chr12 72299297 72299433 -48958097 - RSINE1 SINE B4 0 165 4 7 1136 554 262 102 68 chr12 72299765 72299941 -48957589 - B3A SINE B2 -34 182 1 7 1136 22 35 0 0 chr12 72300180 72300209 -48957321 + AT_rich Low_complexity Low_complexity 1 29 0 7 1136 1598 268 78 101 chr12 72300495 72301029 -48956501 - L1_Rod LINE L1 -4 5843 5301 7 1136 315 0 0 0 chr12 72301029 72301064 -48956466 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1136 669 301 63 15 chr12 72301069 72301339 -48956191 - B4A SINE B4 -8 284 2 7 1136 1598 268 78 101 chr12 72301339 72301413 -48956117 - L1_Rod LINE L1 -547 5300 5255 7 1136 826 180 256 0 chr12 72301413 72301585 -48955945 - B3 SINE B2 0 216 1 7 1136 1598 268 78 101 chr12 72301585 72302008 -48955522 - L1_Rod LINE L1 -593 5254 4830 7 1136 1490 78 5 5 chr12 72302008 72302200 -48955330 - B2_Mm1t SINE B2 0 193 2 7 1136 1598 268 78 101 chr12 72302200 72302268 -48955262 - L1_Rod LINE L1 -1018 4829 4761 7 1136 1065 213 280 0 chr12 72302290 72302586 -48954944 - MTE2b LTR MaLR 0 379 1 7 1136 4522 263 138 29 chr12 72302586 72304007 -48953523 - MTE2b-int LTR MaLR 0 1580 5 7 1136 527 285 144 10 chr12 72304046 72304303 -48953227 - MTE2b LTR MaLR -84 295 1 7 1136 797 259 0 22 chr12 72305376 72305554 -48951976 - B3 SINE B2 -5 211 38 7 1136 357 315 0 0 chr12 72305586 72305678 -48951852 - BGLII_B LTR ERVK -29 412 321 7 1136 1326 104 49 0 chr12 72305754 72305937 -48951593 - B2_Mm1a SINE B2 0 193 2 7 1136 468 135 33 11 chr12 72305982 72306072 -48951458 + B2_Mm2 SINE B2 97 188 -7 7 1136 549 0 0 0 chr12 72306574 72306635 -48950895 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 1136 875 204 7 0 chr12 72306722 72306869 -48950661 + B1_Mur2 SINE Alu 2 149 0 7 1136 229 331 21 29 chr12 72306979 72307119 -48950411 - L1M2 LINE L1 -4191 2658 2520 7 1136 6645 82 69 84 chr12 72307850 72308510 -48949020 + L1Md_Gf LINE L1 1 656 -5866 7 1136 230 316 59 59 chr12 72308510 72308611 -48948919 + RLTR45 LTR ERVK 4 104 -378 7 1136 6645 82 69 84 chr12 72308611 72309098 -48948432 + L1Md_Gf LINE L1 657 1142 -5380 7 1136 36556 39 0 0 chr12 72309064 72313448 -48944082 + L1Md_T LINE L1 1203 5586 -297 7 1136 9003 33 0 0 chr12 72313448 72314444 -48943086 + L1Md_T LINE L1 5587 6582 0 7 1136 295 238 63 0 chr12 72314706 72314769 -48942761 + B4A SINE B4 1 67 -225 7 1136 798 258 27 5 chr12 72314787 72314974 -48942556 + B3 SINE B2 1 191 -25 7 1136 565 307 84 17 chr12 72315018 72315197 -48942333 + B4 SINE B4 84 274 -18 7 1136 887 249 40 49 chr12 72315227 72315574 -48941956 + RLTR15 LTR ERVK 1 344 -15 7 1136 2017 139 91 0 chr12 72315582 72315921 -48941609 - ORR1B1 LTR MaLR -24 370 1 7 1136 791 209 170 59 chr12 72316445 72316811 -48940719 + MTE2a LTR MaLR 6 419 0 7 1136 378 83 0 32 chr12 72317230 72317292 -48940238 + PB1D9 SINE Alu 61 120 0 7 1136 258 324 50 7 chr12 72318023 72318163 -48939367 + L1MD LINE L1 5079 5224 -922 7 1136 4710 175 71 39 chr12 72318662 72319642 -48937888 - RMER1A Other Other -13 1017 6 7 1136 823 274 84 38 chr12 72320606 72321019 -48936511 + Lx8 LINE L1 5350 5768 -1705 7 1136 479 291 124 34 chr12 72321019 72321286 -48936244 + B4A SINE B4 1 291 -1 7 1136 730 289 53 136 chr12 72321286 72321446 -48936084 + Lx8 LINE L1 5762 5920 -1553 7 1136 2011 178 33 46 chr12 72321449 72321838 -48935692 - ORR1C2 LTR MaLR 0 384 1 7 1136 235 321 12 36 chr12 72321988 72322072 -48935458 + ID_B1 SINE B4 135 216 -8 7 1136 321 273 0 0 chr12 72321998 72322079 -48935451 + B1F SINE Alu 68 141 -8 7 1136 710 231 35 14 chr12 72322534 72322679 -48934851 - B1_Mur1 SINE Alu 0 149 2 7 1136 712 206 0 54 chr12 72322738 72322887 -48934643 + B1_Mur2 SINE Alu 9 149 0 7 1136 1554 63 15 25 chr12 72323535 72323731 -48933799 + B2_Mm2 SINE B2 2 195 0 7 1136 1692 149 36 0 chr12 72324024 72324299 -48933231 - ORR1C1 LTR MaLR 0 384 100 7 1136 342 0 0 0 chr12 72324651 72324689 -48932841 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1136 432 0 0 0 chr12 72324689 72324736 -48932794 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1136 27 29 0 0 chr12 72324864 72324898 -48932632 + AT_rich Low_complexity Low_complexity 1 34 0 7 1136 461 187 11 0 chr12 72325229 72325320 -48932210 - ORR1C1-int LTR MaLR -1413 96 5 7 1136 2189 146 55 17 chr12 72325320 72325681 -48931849 - ORR1C1 LTR MaLR -3 375 1 7 1136 926 157 8 0 chr12 72325804 72325938 -48931592 - B1_Mus1 SINE Alu -12 136 2 7 1136 361 333 18 0 chr12 72326080 72326194 -48931336 + RSINE1 SINE B4 40 155 -10 7 1136 641 227 8 8 chr12 72326310 72326443 -48931087 - RSINE1 SINE B4 -30 135 3 7 1136 350 206 196 0 chr12 72327109 72327206 -48930324 + MIR SINE MIR 5 120 -142 7 1136 213 175 0 0 chr12 72328626 72328666 -48928864 + A-rich Low_complexity Low_complexity 1 40 0 7 1136 288 0 0 0 chr12 72329207 72329239 -48928291 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1136 207 0 0 0 chr12 72331039 72331062 -48926468 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1136 1209 48 0 14 chr12 72331062 72331198 -48926332 - B1_Mus1 SINE Alu -11 137 2 7 1136 855 179 117 31 chr12 72331242 72331438 -48926092 - B3 SINE B2 -3 213 1 7 1136 279 0 0 0 chr12 72331447 72331478 -48926052 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1136 414 0 0 0 chr12 72331478 72331523 -48926007 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1136 730 194 108 6 chr12 72332310 72332486 -48925044 - B3 SINE B2 -4 212 19 7 1136 1304 146 26 31 chr12 72333077 72333303 -48924227 - URR1B DNA MER1_type 0 225 1 7 1136 334 231 99 0 chr12 72333437 72333528 -48924002 + RSINE1 SINE B4 3 102 -63 7 1136 441 0 0 0 chr12 72334523 72334572 -48922958 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1136 694 189 32 83 chr12 72336105 72336261 -48921269 + B1_Mur2 SINE Alu 2 149 0 7 1136 924 127 15 0 chr12 72337193 72337327 -48920203 + B1_Mur3 SINE Alu 1 136 -13 7 1136 318 276 39 19 chr12 72338596 72338700 -48918830 + L2a LINE L2 3265 3413 -13 7 1136 3474 25 2 2 chr12 72338901 72339297 -48918233 + MTA_Mm LTR MaLR 1 396 0 7 1136 9379 32 2 1 chr12 72339297 72340394 -48917136 + MTA_Mm-int LTR MaLR 1 1098 0 7 1136 3474 25 2 2 chr12 72340394 72340790 -48916740 + MTA_Mm LTR MaLR 1 396 0 7 1136 290 286 32 42 chr12 72340792 72340887 -48916643 + RSINE1 SINE B4 67 160 -5 7 1136 1057 30 106 0 chr12 72341922 72342054 -48915476 + B1_Mus2 SINE Alu 2 147 0 7 1136 219 159 0 0 chr12 72342054 72342089 -48915441 + A-rich Low_complexity Low_complexity 9 43 0 7 1136 1290 76 54 5 chr12 72342108 72342293 -48915237 + B2_Mm2 SINE B2 2 195 0 7 1136 929 88 65 22 chr12 72344412 72344551 -48912979 + B1_Mus1 SINE Alu 1 145 -3 7 1136 429 20 0 0 chr12 72344551 72344601 -48912929 + (GAA)n Simple_repeat Simple_repeat 2 51 0 7 1136 229 169 17 17 chr12 72345277 72345337 -48912193 + CT-rich Low_complexity Low_complexity 1 60 0 7 1136 700 258 199 45 chr12 72345337 72345779 -48911751 + Lx8 LINE L1 6958 7467 -6 7 1136 327 318 22 61 chr12 72345891 72346072 -48911458 - MER5B DNA MER1_type -4 174 1 7 1136 22 0 0 0 chr12 72346508 72346530 -48911000 + AT_rich Low_complexity Low_complexity 1 22 0 7 1136 266 105 0 0 chr12 72346986 72347024 -48910506 - Lx8 LINE L1 -525 6948 6911 7 1136 2972 104 0 62 chr12 72347024 72347494 -48910036 + RLTR11B LTR ERVK 13 453 0 7 1136 771 327 29 29 chr12 72347659 72347939 -48909591 - Tigger5 DNA MER2_type -1 2405 2126 7 1136 1406 86 37 0 chr12 72349290 72349477 -48908053 - B2_Mm2 SINE B2 -1 194 1 7 1136 603 102 0 0 chr12 72351239 72351327 -48906203 + (CA)n Simple_repeat Simple_repeat 2 89 0 7 1136 315 0 0 0 chr12 72351681 72351716 -48905814 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 17 423 0 0 0 chr12 72351716 72351762 -48905768 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1137 242 325 108 0 chr12 72352215 72352335 -48905195 + LTR78 LTR ERV1 1019 1151 -153 8 1137 245 203 0 39 chr12 72352605 72352643 -48904887 + A-rich Low_complexity Low_complexity 1 36 0 8 1137 1236 61 0 0 chr12 72352643 72352791 -48904739 + B1_Mus1 SINE Alu 1 148 0 8 1137 245 203 0 39 chr12 72352791 72352829 -48904701 + A-rich Low_complexity Low_complexity 37 74 0 8 1137 867 233 61 0 chr12 72352837 72353017 -48904513 + B3 SINE B2 1 191 -25 8 1137 662 294 77 23 chr12 72354351 72354612 -48902918 - B4A SINE B4 -14 278 4 8 1137 314 309 0 18 chr12 72354723 72354835 -48902695 + (TATG)n Simple_repeat Simple_repeat 1 110 0 8 1137 827 323 10 17 chr12 72354841 72355134 -48902396 - B4A SINE B4 0 292 2 8 1137 336 211 0 0 chr12 72355138 72355214 -48902316 + (CAT)n Simple_repeat Simple_repeat 3 78 0 8 1137 267 31 0 0 chr12 72355670 72355702 -48901828 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1137 627 48 0 0 chr12 72356298 72356381 -48901149 + (TG)n Simple_repeat Simple_repeat 1 83 0 8 1137 571 254 0 0 chr12 72356385 72356499 -48901031 - RSINE1 SINE B4 -39 126 13 8 1137 21 0 0 0 chr12 72356772 72356793 -48900737 + AT_rich Low_complexity Low_complexity 1 21 0 8 1137 273 223 48 184 chr12 72356934 72357068 -48900462 - MLT1A0 LTR MaLR -2 406 261 8 1137 1653 153 11 231 chr12 72358008 72358475 -48899055 + ORR1D1 LTR MaLR 1 364 -10 8 1137 217 374 78 28 chr12 72358807 72358986 -48898544 - MIRb SINE MIR -11 257 70 8 1137 372 298 43 0 chr12 72360129 72360223 -48897307 + B1F1 SINE Alu 1 98 -51 8 1137 638 159 38 45 chr12 72360247 72360379 -48897151 + B1_Mur1 SINE Alu 1 131 -18 8 1137 941 26 9 0 chr12 72360387 72360503 -48897027 + (GAA)n Simple_repeat Simple_repeat 2 118 0 8 1137 1098 58 0 28 chr12 72360612 72360753 -48896777 + B1_Mm SINE Alu 1 137 -10 8 1137 313 20 20 39 chr12 72360753 72360804 -48896726 + (CAA)n Simple_repeat Simple_repeat 2 51 0 8 1137 1407 73 5 20 chr12 72360926 72361123 -48896407 + B2_Mm2 SINE B2 1 194 -1 8 1137 183 81 50 75 chr12 72361338 72361378 -48896152 - MIR SINE MIR -120 142 104 8 1137 344 319 98 6 chr12 72361562 72361726 -48895804 - LTR87 LTR ERVL? -1 623 445 8 1137 225 354 88 29 chr12 72362456 72362558 -48894972 - MamGypLTR1c LTR Gypsy -416 387 280 8 1137 255 255 38 75 chr12 72362822 72362928 -48894602 - MIRc SINE MIR -3 265 164 8 1137 359 247 26 0 chr12 72362944 72363021 -48894509 - MER63B DNA AcHobo -32 404 326 8 1137 7192 130 18 118 chr12 72363154 72363198 -48894332 + ORR1A3-int LTR MaLR 2 46 -1917 8 1137 215 31 31 0 chr12 72363198 72363230 -48894300 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1137 7192 130 18 118 chr12 72363230 72364649 -48892881 + ORR1A3-int LTR MaLR 47 1319 -644 8 1137 256 202 0 52 chr12 72364669 72364784 -48892746 + (CATA)n Simple_repeat Simple_repeat 2 110 0 8 1137 777 294 104 43 chr12 72364859 72365557 -48891973 + L1ME1 LINE L1 5254 5967 -197 8 1137 1062 52 73 0 chr12 72365571 72365707 -48891823 + B1_Mus1 SINE Alu 2 147 -1 8 1137 210 71 0 0 chr12 72365769 72365797 -48891733 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1137 280 327 59 0 chr12 72365857 72365958 -48891572 + MLT1E1 LTR MaLR 58 164 -396 8 1137 227 278 56 0 chr12 72366038 72366092 -48891438 + MLT1E1 LTR MaLR 356 412 -268 8 1137 605 240 151 2 chr12 72366094 72366246 -48891284 + B3A SINE B2 2 178 -38 8 1137 333 0 0 0 chr12 72366253 72366290 -48891240 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1137 225 0 0 0 chr12 72366290 72366314 -48891216 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 8 1137 607 321 69 37 chr12 72366321 72366538 -48890992 + MLT1E1 LTR MaLR 389 612 -42 8 1137 935 154 28 41 chr12 72366540 72366787 -48890743 - ORR1D1 LTR MaLR 0 394 151 8 1137 325 18 18 167 chr12 72366790 72367125 -48890405 + (AGCTG)n Simple_repeat Simple_repeat 1 284 0 8 1137 257 213 0 85 chr12 72367126 72367208 -48890322 - ORR1D1 LTR MaLR -150 224 150 8 1137 504 268 104 99 chr12 72367457 72367844 -48889686 - RLTR26 LTR ERVK -226 416 1 8 1137 912 105 56 7 chr12 72367848 72367992 -48889538 - ORR1D1 LTR MaLR -223 151 1 8 1137 925 227 97 5 chr12 72368064 72368197 -48889333 - ID_B1 SINE B4 -5 219 84 8 1137 459 0 0 0 chr12 72368197 72368248 -48889282 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 8 1137 925 227 97 5 chr12 72368248 72368309 -48889221 - ID SINE ID -141 83 7 8 1137 285 252 88 29 chr12 72368674 72368776 -48888754 - PB1D10 SINE Alu -1 116 9 8 1137 272 270 13 13 chr12 72368912 72368987 -48888543 + ID4 SINE ID 1 75 -8 8 1137 304 121 29 29 chr12 72368996 72369064 -48888466 + GA-rich Low_complexity Low_complexity 3 70 0 8 1137 873 286 24 10 chr12 72369125 72369333 -48888197 - B3 SINE B2 -5 211 1 8 1137 2344 150 128 43 chr12 72370124 72370661 -48886869 - RLTR31A_Mm LTR ERVK 0 584 2 8 1137 339 209 15 15 chr12 72372195 72372263 -48885267 - ID4 SINE ID -14 69 2 8 1137 1822 190 62 71 chr12 72372335 72372755 -48884775 - RLTR18 LTR ERVK 0 616 201 8 1137 284 239 41 27 chr12 72373007 72373080 -48884450 + RSINE1 SINE B4 84 157 -8 8 1137 750 170 235 6 chr12 72374201 72374384 -48883146 + URR1B DNA MER1_type 1 225 0 8 1137 459 245 193 20 chr12 72374655 72374805 -48882725 + Lx8 LINE L1 7151 7326 -147 8 1137 423 202 0 0 chr12 72374894 72375003 -48882527 + (TG)n Simple_repeat Simple_repeat 1 109 0 8 1137 271 250 75 11 chr12 72375004 72375097 -48882433 + Lx8 LINE L1 7373 7471 -2 8 1137 222 171 0 0 chr12 72375243 72375284 -48882246 + CT-rich Low_complexity Low_complexity 4 44 0 8 1137 261 57 0 0 chr12 72375323 72375358 -48882172 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 8 1137 520 201 6 19 chr12 72375358 72375469 -48882061 - B1_Mus1 SINE Alu 0 120 2 8 1137 447 183 24 0 chr12 72375703 72375785 -48881745 + B3 SINE B2 125 208 -8 8 1137 219 289 53 43 chr12 72376097 72376191 -48881339 + L2 LINE L2 43 137 -3282 8 1137 514 254 62 0 chr12 72376332 72376462 -48881068 + MER63D DNA AcHobo 11 148 -913 8 1137 253 283 150 0 chr12 72377257 72377370 -48880160 + MER63D DNA AcHobo 178 307 -754 8 1137 244 358 84 17 chr12 72377477 72377656 -48879874 + L2a LINE L2 3231 3421 -5 8 1137 228 263 111 54 chr12 72377861 72377942 -48879588 + B1F SINE Alu 29 113 -4 8 1137 871 273 99 79 chr12 72377942 72378384 -48879146 - Lx8 LINE L1 -244 7229 6779 8 1137 1124 48 34 7 chr12 72378396 72378544 -48878986 + B2_Mm2 SINE B2 2 153 -42 8 1137 191 36 0 35 chr12 72378544 72378573 -48878957 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 8 1137 674 211 113 0 chr12 72378622 72378755 -48878775 + B1_Mur4 SINE Alu 2 149 -1 8 1137 454 217 0 35 chr12 72378784 72378870 -48878660 + B1_Mus2 SINE Alu 1 83 -64 8 1137 261 0 0 0 chr12 72378878 72378907 -48878623 + (CAT)n Simple_repeat Simple_repeat 3 31 0 8 1137 810 102 0 0 chr12 72378907 72379025 -48878505 + (TTCTCC)n Simple_repeat Simple_repeat 3 120 0 8 1137 1350 95 21 0 chr12 72379038 72379228 -48878302 - B2_Mm2 SINE B2 -1 194 1 8 1137 991 122 0 33 chr12 72379431 72379583 -48877947 - B1_Mus1 SINE Alu -1 147 1 8 1137 488 258 102 0 chr12 72379634 72379718 -48877812 + B1F2 SINE Alu 2 98 -51 8 1137 2086 163 14 31 chr12 72379718 72380135 -48877395 - RMER17C LTR ERVK 0 410 1 8 1137 488 258 102 0 chr12 72380135 72380178 -48877352 + B1F2 SINE Alu 99 141 -8 8 1137 531 219 0 0 chr12 72380433 72380529 -48877001 - RSINE1 SINE B4 -66 99 4 8 1137 246 342 89 24 chr12 72380703 72380826 -48876704 - MIRb SINE MIR -27 241 111 8 1137 321 47 0 0 chr12 72381182 72381225 -48876305 + (T)n Simple_repeat Simple_repeat 1 43 0 8 1137 319 284 0 0 chr12 72381824 72381898 -48875632 - Tigger5 DNA MER2_type -2289 117 44 8 1137 327 271 14 0 chr12 72382716 72382786 -48874744 + ID4_ SINE ID 6 76 -7 8 1137 3341 138 111 29 chr12 72383057 72383852 -48873678 + RLTR25B LTR ERVK 1 957 -146 8 1137 333 0 0 0 chr12 72383852 72383889 -48873641 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1137 378 0 0 0 chr12 72383889 72383930 -48873600 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 1137 2238 108 227 47 chr12 72383930 72384058 -48873472 + RLTR25B LTR ERVK 958 1100 -3 8 1137 354 265 40 10 chr12 72384915 72385014 -48872516 - PB1D10 SINE Alu -3 114 13 8 1137 341 253 44 33 chr12 72385102 72385192 -48872338 - MLT1E LTR MaLR -135 518 428 8 1137 818 132 73 0 chr12 72385225 72385361 -48872169 + B1_Mur4 SINE Alu 4 149 -1 8 1137 3293 48 2 5 chr12 72385366 72385767 -48871763 - MTB LTR MaLR 0 400 1 8 1137 294 147 0 0 chr12 72385768 72385836 -48871694 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 8 1137 300 284 68 0 chr12 72385861 72385947 -48871583 - MLT1E LTR MaLR -375 278 187 8 1137 898 197 75 62 chr12 72385947 72386174 -48871356 - ORR1D1 LTR MaLR 0 374 145 8 1137 672 143 6 130 chr12 72386185 72386346 -48871184 - B1_Mur3 SINE Alu 0 149 9 8 1137 721 102 9 0 chr12 72386351 72386459 -48871071 - ORR1D1 LTR MaLR -235 139 31 8 1137 225 0 0 0 chr12 72386460 72386485 -48871045 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1137 266 229 90 23 chr12 72386488 72386581 -48870949 - MLT1E LTR MaLR -487 193 98 8 1137 598 237 30 22 chr12 72386636 72386770 -48870760 + ID_B1 SINE B4 82 216 -8 8 1137 379 232 174 26 chr12 72387049 72387164 -48870366 + RSINE1 SINE B4 3 134 -31 8 1137 360 64 0 0 chr12 72387166 72387213 -48870317 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1137 180 77 0 0 chr12 72387215 72387241 -48870289 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 8 1137 311 314 127 0 chr12 72388700 72388818 -48868712 - MER45A DNA Tip100 -30 148 16 8 1137 863 206 90 0 chr12 72389766 72389955 -48867575 - B3 SINE B2 -9 207 2 8 1137 706 252 0 0 chr12 72390406 72390545 -48866985 - B1_Mur2 SINE Alu -9 140 2 8 1137 654 212 22 0 chr12 72390665 72390803 -48866727 - ID_B1 SINE B4 0 224 88 8 1137 337 274 101 94 chr12 72390891 72391044 -48866486 - BLACKJACK DNA AcHobo -584 2360 2214 8 1137 291 226 15 185 chr12 72391044 72391174 -48866356 - PB1D9 SINE Alu -9 111 4 8 1137 337 274 101 94 chr12 72391174 72391318 -48866212 - BLACKJACK DNA AcHobo -731 2213 2061 8 1137 323 96 19 0 chr12 72391709 72391761 -48865769 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1137 293 219 0 40 chr12 72392141 72392217 -48865313 - PB1D10 SINE Alu -1 116 44 9 1137 432 0 0 0 chr12 72392446 72392494 -48865036 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1137 709 229 16 43 chr12 72392494 72392681 -48864849 + ID_B1 SINE B4 12 193 -31 9 1137 340 260 0 0 chr12 72393753 72393826 -48863704 - PB1 SINE Alu -11 116 44 9 1137 366 74 0 0 chr12 72393836 72393890 -48863640 + (CAACC)n Simple_repeat Simple_repeat 2 55 0 9 1137 279 0 0 0 chr12 72393890 72393920 -48863610 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 9 1137 491 170 43 0 chr12 72394411 72394505 -48863025 + B1F SINE Alu 22 119 -30 9 1137 449 219 76 0 chr12 72394505 72394516 -48863014 + ID_B1 SINE B4 103 215 -9 9 1137 22 35 0 0 chr12 72394641 72394670 -48862860 + AT_rich Low_complexity Low_complexity 1 29 0 9 1137 497 286 90 11 chr12 72396424 72396601 -48860929 + MER58A DNA MER1_type 2 192 -32 9 1137 257 329 35 28 chr12 72396725 72396869 -48860661 + RSINE1 SINE B4 2 146 -19 9 1137 333 0 0 0 chr12 72396873 72396910 -48860620 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1137 221 243 64 64 chr12 72397933 72398043 -48859487 - L2a LINE L2 -51 3375 3266 9 1137 753 164 28 14 chr12 72398565 72398707 -48858823 + B1_Mur2 SINE Alu 6 149 0 9 1137 252 0 0 0 chr12 72398711 72398739 -48858791 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1137 438 36 0 0 chr12 72399209 72399265 -48858265 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 9 1137 462 103 0 0 chr12 72399794 72399872 -48857658 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1137 219 139 0 0 chr12 72400991 72401027 -48856503 + (ATG)n Simple_repeat Simple_repeat 1 36 0 9 1137 324 0 0 0 chr12 72401456 72401492 -48856038 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1137 432 274 11 0 chr12 72401659 72401754 -48855776 + B1_Mur2 SINE Alu 6 101 -48 9 1137 750 179 50 0 chr12 72401787 72401927 -48855603 - B1_Mur4 SINE Alu 0 150 4 9 1137 254 217 17 0 chr12 72401929 72401989 -48855541 + B1F1 SINE Alu 88 148 -1 9 1137 249 33 0 0 chr12 72402003 72402033 -48855497 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 9 1137 198 91 0 0 chr12 72402396 72402429 -48855101 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 9 1137 299 0 0 0 chr12 72403129 72403165 -48854365 - U2 snRNA snRNA -152 36 1 9 1137 366 341 121 13 chr12 72403474 72403706 -48853824 + B4A SINE B4 33 289 -3 9 1137 273 263 10 48 chr12 72403717 72403732 -48853798 + L1MA4 LINE L1 5831 5841 -459 9 1137 1630 25 45 0 chr12 72403732 72403930 -48853600 - L1Md_F3 LINE L1 -14 6570 6364 9 1137 4852 29 7 0 chr12 72403930 72404490 -48853040 + L1Md_F3 LINE L1 5811 6374 -210 9 1137 266 284 15 0 chr12 72404675 72404742 -48852788 + ID4 SINE ID 1 68 -15 9 1137 510 261 7 0 chr12 72404851 72404989 -48852541 - L1MA5 LINE L1 -8 6292 6154 9 1137 737 223 66 39 chr12 72405007 72405189 -48852341 - B3A SINE B2 -11 187 1 9 1137 1385 64 31 21 chr12 72405262 72405453 -48852077 - B2_Mm2 SINE B2 -1 194 2 9 1137 1062 224 97 48 chr12 72405454 72405867 -48851663 - L1MA5 LINE L1 -352 5948 5516 9 1137 938 226 13 66 chr12 72406054 72406281 -48851249 + B3 SINE B2 2 216 0 9 1137 1453 83 16 0 chr12 72406564 72406756 -48850774 - B2_Mm2 SINE B2 0 195 1 9 1137 381 164 14 0 chr12 72409879 72409952 -48847578 - B1_Mus1 SINE Alu -69 79 6 9 1137 221 286 248 0 chr12 72410048 72410153 -48847377 - MIR SINE MIR -111 151 21 9 1137 198 0 0 0 chr12 72410179 72410201 -48847329 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 9 1137 39 38 0 0 chr12 72410698 72410751 -48846779 + GC_rich Low_complexity Low_complexity 1 53 0 9 1137 192 77 0 0 chr12 72410788 72410814 -48846716 + (CGGG)n Simple_repeat Simple_repeat 3 28 0 9 1137 518 275 20 20 chr12 72413266 72413418 -48844112 - RSINE1 SINE B4 0 165 14 9 1137 285 51 0 0 chr12 72413613 72413652 -48843878 + (TTTAA)n Simple_repeat Simple_repeat 3 41 0 9 1137 528 164 26 43 chr12 72414129 72414244 -48843286 - B1F SINE Alu -3 114 2 9 1137 29 28 0 0 chr12 72414546 72414582 -48842948 + AT_rich Low_complexity Low_complexity 1 36 0 9 1137 817 80 0 0 chr12 72414587 72414700 -48842830 - B2_Mm2 SINE B2 -80 115 3 9 1137 1370 70 38 5 chr12 72414975 72415161 -48842369 - B2_Mm1a SINE B2 -1 192 1 9 1137 186 43 0 0 chr12 72415414 72415437 -48842093 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 9 1137 621 232 219 6 chr12 72415825 72416003 -48841527 + B3 SINE B2 1 216 0 9 1137 222 326 67 0 chr12 72416003 72416085 -48841445 - MIRb SINE MIR -133 135 48 9 1137 324 0 0 0 chr12 72416142 72416178 -48841352 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 9 1137 255 125 0 0 chr12 72416827 72416867 -48840663 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 9 1137 541 201 82 141 chr12 72416928 72417148 -48840382 - B3 SINE B2 -9 207 1 9 1137 604 247 159 0 chr12 72417279 72417449 -48840081 + B3A SINE B2 1 197 -1 9 1137 22 0 0 0 chr12 72421203 72421225 -48836305 + AT_rich Low_complexity Low_complexity 1 22 0 9 1137 600 277 85 0 chr12 72421298 72421475 -48836055 - B3 SINE B2 -24 192 1 9 1137 186 43 0 0 chr12 72421540 72421563 -48835967 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1137 401 145 14 0 chr12 72421563 72421632 -48835898 - B1F SINE Alu -9 140 71 9 1137 1236 54 0 0 chr12 72421650 72421798 -48835732 - B1_Mus1 SINE Alu 0 148 1 9 1137 512 200 0 9 chr12 72422037 72422143 -48835387 - B3 SINE B2 0 216 112 9 1137 1033 213 219 32 chr12 72422447 72422757 -48834773 + ORR1D2 LTR MaLR 3 370 0 9 1137 206 158 26 0 chr12 72422770 72422808 -48834722 + CT-rich Low_complexity Low_complexity 2 40 0 9 1137 763 133 133 0 chr12 72422808 72422936 -48834594 - B1_Mur4 SINE Alu -5 145 1 9 1137 30 0 0 0 chr12 72423165 72423195 -48834335 + AT_rich Low_complexity Low_complexity 1 30 0 9 1137 639 267 42 22 chr12 72423680 72423929 -48833601 - L1M5 LINE L1 -557 5622 5367 9 1137 183 80 0 0 chr12 72424021 72424046 -48833484 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1137 210 37 0 0 chr12 72424146 72424173 -48833357 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 9 1137 183 114 0 0 chr12 72424278 72424313 -48833217 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 9 1137 561 264 0 8 chr12 72424352 72424482 -48833048 - B3A SINE B2 -69 129 1 9 1137 328 272 100 12 chr12 72424499 72424659 -48832871 - L1M4 LINE L1 -961 5185 5012 9 1137 404 215 32 11 chr12 72424983 72425077 -48832453 - B1F SINE Alu -9 140 45 9 1137 300 53 0 0 chr12 72425143 72425181 -48832349 + (CCCCCT)n Simple_repeat Simple_repeat 5 42 0 9 1137 32 26 0 0 chr12 72425219 72425258 -48832272 + AT_rich Low_complexity Low_complexity 1 39 0 9 1137 212 0 0 35 chr12 72425258 72425287 -48832243 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1137 1123 79 0 0 chr12 72425287 72425427 -48832103 - B1_Mus1 SINE Alu -7 141 2 9 1137 934 208 34 10 chr12 72425433 72425642 -48831888 - ID_B1 SINE B4 -1 223 10 9 1137 285 29 0 0 chr12 72425711 72425745 -48831785 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 9 1137 842 135 14 0 chr12 72425756 72425897 -48831633 - B1_Mur4 SINE Alu -6 144 2 9 1137 373 144 25 119 chr12 72425794 72425912 -48831618 - MT2B LTR ERVL -343 258 152 9 1137 878 117 7 0 chr12 72425978 72426115 -48831415 - B1_Mus2 SINE Alu -1 146 9 9 1137 392 175 0 134 chr12 72426011 72426130 -48831400 - MT2B LTR ERVL -337 264 162 9 1137 195 162 0 0 chr12 72426440 72426477 -48831053 + G-rich Low_complexity Low_complexity 5 41 0 9 1137 1892 100 54 112 chr12 72426543 72426892 -48830638 - ORR1A4 LTR MaLR 0 329 1 9 1137 1119 171 44 57 chr12 72427453 72427584 -48829946 - URR1A DNA MER1_type 0 226 103 9 1137 198 0 0 0 chr12 72427584 72427606 -48829924 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 9 1137 1088 68 0 0 chr12 72427607 72427740 -48829790 - B1_Mus2 SINE Alu -12 135 3 9 1137 1119 171 44 57 chr12 72427740 72427835 -48829695 - URR1A DNA MER1_type -124 102 1 9 1137 467 290 80 0 chr12 72427868 72428006 -48829524 - B1F SINE Alu 0 149 1 9 1137 495 240 0 0 chr12 72428101 72428226 -48829304 + (TA)n Simple_repeat Simple_repeat 1 125 0 9 1137 591 238 5 19 chr12 72428970 72429161 -48828369 - B3 SINE B2 -10 185 1 9 1137 1470 111 5 0 chr12 72429278 72429495 -48828035 - URR1B DNA MER1_type -1 224 7 9 1137 998 65 228 19 chr12 72429552 72429710 -48827820 - B2_Mm2 SINE B2 -1 194 4 9 1137 917 42 0 8 chr12 72429847 72429966 -48827564 + (TTTC)n Simple_repeat Simple_repeat 1 118 0 9 1137 233 218 55 0 chr12 72430429 72430484 -48827046 - L1ME4a LINE L1 -110 6014 5957 9 1137 227 128 0 0 chr12 72430910 72430949 -48826581 - PB1D9 SINE Alu 0 120 82 9 1137 493 102 0 43 chr12 72431346 72431438 -48826092 + (CCCCCT)n Simple_repeat Simple_repeat 4 91 0 9 1137 265 229 45 67 chr12 72431448 72431537 -48825993 - L1ME4a LINE L1 -440 5684 5598 9 1137 598 157 72 35 chr12 72431774 72431952 -48825578 + B3 SINE B2 1 185 -10 9 1137 255 294 164 62 chr12 72432304 72432529 -48825001 - MLT1J LTR MaLR -78 434 187 9 1137 732 166 6 109 chr12 72432549 72432732 -48824798 - RSINE1 SINE B4 0 165 2 9 1137 490 328 27 72 chr12 72432737 72432890 -48824640 - MLT1J LTR MaLR -293 219 78 9 1137 226 0 0 56 chr12 72432890 72432926 -48824604 + (TGGG)n Simple_repeat Simple_repeat 2 35 0 9 1137 490 328 27 72 chr12 72432926 72432995 -48824535 - MLT1J LTR MaLR -435 77 7 9 1137 21 0 0 0 chr12 72433075 72433096 -48824434 + AT_rich Low_complexity Low_complexity 1 21 0 9 1137 376 333 22 0 chr12 72433281 72433419 -48824111 - RSINE1 SINE B4 -6 159 19 9 1137 275 292 77 7 chr12 72435540 72435695 -48821835 - RMER15 LTR ERVL -4 571 406 9 1137 616 209 0 0 chr12 72436612 72436727 -48820803 + ID_B1 SINE B4 105 219 -5 9 1137 521 148 38 23 chr12 72439313 72439444 -48818086 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 1 1137 288 325 32 24 chr12 72440204 72440327 -48817203 - MER102c DNA MER1_type -5 326 203 1 1137 532 195 35 17 chr12 72442201 72442316 -48815214 + B3A SINE B2 8 124 -74 1 1137 698 227 181 16 chr12 72442702 72442890 -48814640 - ID_B1 SINE B4 -2 222 4 1 1137 207 0 0 0 chr12 72443011 72443034 -48814496 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1 1137 312 120 0 0 chr12 72443109 72443159 -48814371 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1 1137 232 192 0 0 chr12 72443178 72443230 -48814300 - Lx5 LINE L1 -3 7047 6996 1 1137 24 0 0 0 chr12 72443230 72443254 -48814276 + AT_rich Low_complexity Low_complexity 1 24 0 1 1137 3160 47 31 8 chr12 72443932 72444319 -48813211 - MTA_Mm LTR MaLR 0 396 1 1 1137 307 179 0 0 chr12 72444328 72444384 -48813146 - L1MC4 LINE L1 -93 7789 7734 1 1137 347 320 36 122 chr12 72444534 72444683 -48812847 - L1MC4 LINE L1 -432 7610 7469 1 1137 1124 68 13 20 chr12 72444683 72444833 -48812697 - B1_Mur4 SINE Alu 0 150 2 1 1137 347 320 36 122 chr12 72444833 72445132 -48812398 - L1MC4 LINE L1 -574 7468 7201 1 1137 239 215 123 0 chr12 72445155 72445220 -48812310 + ID_B1 SINE B4 140 212 -12 1 1137 1159 61 0 26 chr12 72445317 72445468 -48812062 + B1_Mus1 SINE Alu 1 147 -1 1 1137 272 274 98 0 chr12 72445567 72445669 -48811861 - L1MC4 LINE L1 -827 7055 6944 1 1137 342 297 40 0 chr12 72445844 72445945 -48811585 - PB1D10 SINE Alu -7 110 6 1 1137 256 333 95 9 chr12 72446192 72446413 -48811117 - L1M5 LINE L1 -412 5828 5589 1 1137 273 98 0 0 chr12 72446920 72446961 -48810569 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1137 361 225 62 0 chr12 72447123 72447203 -48810327 - MIR3 SINE MIR -23 185 101 1 1137 240 233 0 0 chr12 72447493 72447566 -48809964 + CT-rich Low_complexity Low_complexity 2 74 0 1 1137 331 283 61 30 chr12 72448152 72448283 -48809247 - MIR SINE MIR -24 238 104 1 1137 295 194 296 21 chr12 72448652 72448794 -48808736 - B3A SINE B2 -16 182 2 1 1137 281 211 59 62 chr12 72448914 72448999 -48808531 - MIR SINE MIR -182 94 5 1 1137 646 96 19 0 chr12 72450684 72450788 -48806742 + (TTTTC)n Simple_repeat Simple_repeat 4 109 0 1 1137 1152 75 0 7 chr12 72450788 72450936 -48806594 - B1_Mus2 SINE Alu 0 147 1 1 1137 228 242 0 0 chr12 72451066 72451128 -48806402 + A-rich Low_complexity Low_complexity 1 62 0 1 1137 658 268 48 66 chr12 72451325 72451597 -48805933 + L1MA5 LINE L1 6017 6283 -17 1 1137 849 158 7 40 chr12 72451928 72452080 -48805450 - B1_Mur4 SINE Alu -1 149 3 1 1137 2297 128 207 33 chr12 72452350 72452804 -48804726 + RMER16 LTR ERVK 1 533 0 1 1137 267 346 9 0 chr12 72453904 72454011 -48803519 - L2c LINE L2 -230 3157 3050 1 1137 448 272 24 48 chr12 72454628 72454794 -48802736 - L1M4 LINE L1 -1722 4424 4263 1 1137 360 0 0 0 chr12 72454798 72454838 -48802692 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1137 348 327 9 0 chr12 72454840 72454950 -48802580 - PB1D10 SINE Alu -4 113 3 1 1137 33 43 0 0 chr12 72455263 72455310 -48802220 + AT_rich Low_complexity Low_complexity 1 47 0 1 1137 513 320 0 0 chr12 72455359 72455487 -48802043 - B1_Mur2 SINE Alu -21 128 1 1 1137 318 208 0 53 chr12 72457404 72457480 -48800050 - ID_B1 SINE B4 -2 222 151 1 1137 1750 190 54 3 chr12 72457514 72457863 -48799667 + ORR1D1 LTR MaLR 5 371 -3 1 1137 800 313 14 65 chr12 72457865 72458159 -48799371 - B4A SINE B4 -6 286 8 1 1137 486 281 25 18 chr12 72458301 72458464 -48799066 - RSINE1 SINE B4 -1 164 1 1 1137 260 181 60 0 chr12 72458547 72458630 -48798900 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 1137 198 0 0 0 chr12 72458635 72458657 -48798873 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1137 308 274 0 0 chr12 72458951 72459024 -48798506 - ID4_ SINE ID -1 82 10 1 1137 27 29 0 0 chr12 72459243 72459277 -48798253 + AT_rich Low_complexity Low_complexity 1 34 0 1 1137 180 111 0 0 chr12 72459329 72459356 -48798174 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1137 502 307 7 0 chr12 72459393 72459530 -48798000 - RSINE1 SINE B4 -26 139 2 1 1137 592 268 91 23 chr12 72461250 72461426 -48796104 + ID_B1 SINE B4 24 211 -13 1 1137 380 89 51 0 chr12 72461434 72461513 -48796017 + (GA)n Simple_repeat Simple_repeat 1 83 0 1 1137 259 281 24 0 chr12 72462381 72462463 -48795067 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1137 554 227 29 142 chr12 72462548 72462753 -48794777 + MTEa LTR MaLR 43 224 -155 1 1137 1701 110 36 138 chr12 72462755 72463146 -48794384 + ORR1B1 LTR MaLR 41 391 -3 1 1137 1368 72 0 11 chr12 72463222 72463404 -48794126 + B2_Mm2 SINE B2 2 181 -14 1 1137 1159 91 6 6 chr12 72463920 72464096 -48793434 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1 1137 189 175 0 0 chr12 72464194 72464234 -48793296 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1137 636 242 180 0 chr12 72464355 72464533 -48792997 - B3 SINE B2 -6 210 1 1 1137 212 184 0 0 chr12 72464839 72464877 -48792653 + A-rich Low_complexity Low_complexity 1 38 0 1 1137 229 274 197 24 chr12 72465787 72465914 -48791616 - MLT1G1 LTR MaLR -319 260 112 1 1137 656 222 243 7 chr12 72465963 72466251 -48791279 - MTEa LTR MaLR -23 356 1 1 1137 257 51 0 25 chr12 72467619 72467659 -48789871 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 1 1137 983 39 0 8 chr12 72467659 72467790 -48789740 - B1_Mus2 SINE Alu 0 147 18 1 1137 552 241 105 0 chr12 72468622 72468755 -48788775 + B3 SINE B2 51 197 -19 1 1137 603 74 0 0 chr12 72468887 72468968 -48788562 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 1 1137 325 206 109 64 chr12 72469337 72469471 -48788059 - ORR1E LTR MaLR -230 140 8 1 1137 288 261 65 32 chr12 72470541 72470664 -48786866 + MIR3 SINE MIR 81 207 -1 1 1137 21 0 0 0 chr12 72471325 72471346 -48786184 + AT_rich Low_complexity Low_complexity 1 21 0 1 1137 407 315 42 7 chr12 72472405 72472549 -48784981 + B1F SINE Alu 1 149 0 1 1137 2201 148 42 8 chr12 72472603 72472984 -48784546 - ORR1B1 LTR MaLR 0 394 1 1 1137 725 0 0 12 chr12 72476802 72476888 -48780642 + (TTC)n Simple_repeat Simple_repeat 2 86 0 1 1137 1186 64 0 0 chr12 72476894 72477035 -48780495 - B1_Mm SINE Alu -6 141 1 1 1137 250 241 0 18 chr12 72478782 72478837 -48778693 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1137 2454 146 5 12 chr12 72478858 72479274 -48778256 - MTC LTR MaLR -2 419 7 1 1137 433 309 76 76 chr12 72479272 72479482 -48778048 - B4A SINE B4 -46 246 37 1 1137 1320 81 5 36 chr12 72479529 72479721 -48777809 - B2_Mm1t SINE B2 -7 186 1 1 1137 603 257 223 0 chr12 72479728 72479903 -48777627 - B3 SINE B2 -1 215 2 1 1137 1127 245 127 12 chr12 72479952 72480274 -48777256 - MTEb LTR MaLR -16 363 5 1 1137 974 146 76 0 chr12 72480919 72481090 -48776440 - MTC LTR MaLR -221 200 17 1 1137 1150 152 10 10 chr12 72481082 72481281 -48776249 + RLTR17 LTR ERVK 494 692 0 1 1137 685 263 68 130 chr12 72481497 72481790 -48775740 + B4 SINE B4 9 283 -9 1 1137 1409 186 133 9 chr12 72481957 72482096 -48775434 + ORR1D1 LTR MaLR 3 164 -210 1 1137 495 0 0 0 chr12 72482096 72482151 -48775379 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1137 1409 186 133 9 chr12 72482151 72482342 -48775188 + ORR1D1 LTR MaLR 165 374 0 1 1138 1293 86 40 0 chr12 72482834 72483008 -48774522 + B2_Mm2 SINE B2 2 182 -13 1 1138 1749 205 137 20 chr12 72483179 72483585 -48773945 + MT2A LTR ERVL 28 487 -46 1 1138 408 111 0 0 chr12 72483585 72483648 -48773882 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 1 1138 1749 205 137 20 chr12 72483648 72483694 -48773836 + MT2A LTR ERVL 488 533 0 1 1138 1327 244 29 37 chr12 72485329 72485707 -48771823 - MTE2b LTR MaLR -4 375 1 1 1138 449 254 6 0 chr12 72485801 72485974 -48771556 + T-rich Low_complexity Low_complexity 6 179 0 1 1138 237 231 138 0 chr12 72486128 72486193 -48771337 - B1F1 SINE Alu -48 101 28 1 1138 234 182 0 0 chr12 72486998 72487064 -48770466 + CT-rich Low_complexity Low_complexity 2 67 0 1 1138 689 202 57 0 chr12 72487085 72487209 -48770321 + B3A SINE B2 4 134 -64 1 1138 405 0 0 0 chr12 72487227 72487272 -48770258 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1138 230 0 0 32 chr12 72487791 72487822 -48769708 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1138 885 19 0 0 chr12 72487822 72487925 -48769605 + (TTC)n Simple_repeat Simple_repeat 2 104 0 1 1138 325 282 87 54 chr12 72488930 72489114 -48768416 + Helitron3Na_Mam RC Helitron 244 433 -53 1 1138 1375 94 11 0 chr12 72489180 72489371 -48768159 + B2_Mm1a SINE B2 1 193 0 1 1138 341 211 116 8 chr12 72489401 72489530 -48768000 - MER33 DNA MER1_type -37 287 145 1 1138 300 83 0 0 chr12 72489675 72489723 -48767807 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1138 2761 141 78 45 chr12 72490841 72491392 -48766138 + RMER15 LTR ERVL 1 569 -6 1 1138 688 135 0 0 chr12 72491430 72491534 -48765996 - B1_Mur1 SINE Alu -6 143 40 1 1138 244 211 13 53 chr12 72491473 72491548 -48765982 - RLTR25B LTR ERVK -530 498 427 1 1138 200 271 0 0 chr12 72491548 72491596 -48765934 + CT-rich Low_complexity Low_complexity 3 50 0 1 1138 217 114 0 0 chr12 72491604 72491639 -48765891 - B1_Mus1 SINE Alu -88 60 26 1 1138 441 0 0 0 chr12 72491651 72491700 -48765830 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1138 396 0 0 0 chr12 72491766 72491810 -48765720 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 1 1138 396 0 0 0 chr12 72492209 72492253 -48765277 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1138 739 287 169 36 chr12 72492392 72492923 -48764607 - L1ME2z LINE L1 -457 5987 5386 1 1138 740 246 31 61 chr12 72492928 72493157 -48764373 + ID_B1 SINE B4 1 222 -2 1 1138 1215 68 0 0 chr12 72493364 72493661 -48763869 + (TG)n Simple_repeat Simple_repeat 1 297 0 1 1138 231 339 0 0 chr12 72493683 72493745 -48763785 - ID4 SINE ID -19 64 3 1 1138 372 246 61 9 chr12 72493761 72493876 -48763654 - B1F SINE Alu -7 142 22 1 1138 215 360 111 8 chr12 72494373 72494499 -48763031 + MIR SINE MIR 15 153 -109 1 1138 266 344 23 23 chr12 72494696 72494824 -48762706 - MLT1K LTR MaLR -178 417 290 1 1138 212 86 0 28 chr12 72494993 72495029 -48762501 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 1138 255 193 0 81 chr12 72495206 72495268 -48762262 - MLT1A1 LTR MaLR -6 402 346 1 1138 318 357 47 42 chr12 72495286 72495476 -48762054 - MLT1A1 LTR MaLR -215 193 3 1 1138 1133 298 96 38 chr12 72495478 72496084 -48761446 + Charlie13a DNA Charlie 68 708 -806 1 1138 234 336 41 25 chr12 72496639 72496761 -48760769 + RMER15 LTR ERVL 445 568 -7 1 1138 2406 85 25 0 chr12 72496872 72497191 -48760339 - ORR1A2 LTR MaLR 0 327 1 1 1138 354 45 0 0 chr12 72497702 72497746 -48759784 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1138 525 326 21 0 chr12 72497747 72497888 -48759642 - RSINE1 SINE B4 -18 147 4 1 1138 784 259 27 8 chr12 72497906 72498105 -48759425 - B4A SINE B4 -75 217 2 1 1138 23 0 0 0 chr12 72498494 72498517 -48759013 + AT_rich Low_complexity Low_complexity 1 23 0 1 1138 291 294 75 8 chr12 72499060 72499180 -48758350 + MER5A1 DNA MER1_type 13 140 -26 1 1138 227 313 0 0 chr12 72500222 72500289 -48757241 + GA-rich Low_complexity Low_complexity 5 71 0 1 1138 231 163 0 44 chr12 72500235 72500280 -48757250 + G-rich Low_complexity Low_complexity 5 47 0 2 1138 181 364 68 49 chr12 72500403 72500565 -48756965 - MIR3 SINE MIR -15 193 29 3 1138 624 257 28 7 chr12 72500689 72500834 -48756696 - RSINE1 SINE B4 -2 163 16 4 1138 779 287 39 28 chr12 72501350 72501633 -48755897 + B4 SINE B4 1 286 -6 5 1138 396 0 0 0 chr12 72501635 72501679 -48755851 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1138 492 18 0 0 chr12 72502885 72502942 -48754588 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1138 387 0 0 0 chr12 72503391 72503434 -48754096 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1138 1178 82 0 0 chr12 72503814 72503960 -48753570 - B1_Mus2 SINE Alu 0 147 2 9 1138 2777 42 0 0 chr12 72506785 72507115 -48750415 - L1Md_A LINE L1 0 6582 6253 1 1138 487 278 163 15 chr12 72507236 72507371 -48750159 - ID_B1 SINE B4 0 224 70 1 1138 1275 111 0 16 chr12 72507622 72507806 -48749724 - B2_Mm2 SINE B2 -14 181 1 1 1138 484 299 66 14 chr12 72507813 72508101 -48749429 - L1ME3B LINE L1 -356 5884 5583 1 1138 327 253 313 0 chr12 72508104 72508187 -48749343 + B1F2 SINE Alu 3 111 -6 1 1138 230 343 61 0 chr12 72509599 72509698 -48747832 - MIR SINE MIR -70 192 88 1 1138 286 186 67 76 chr12 72510237 72510254 -48747276 + RMER1C Other Other 1239 1261 -81 1 1138 1986 38 0 0 chr12 72510254 72510489 -48747041 + L1Md_A LINE L1 6348 6582 0 1 1138 411 107 1 105 chr12 72510489 72510576 -48746954 + RMER1B Other Other 991 1066 0 1 1138 185 355 40 74 chr12 72512709 72512858 -48744672 - MER5B DNA MER1_type -34 144 1 1 1138 915 59 0 0 chr12 72512908 72513026 -48744504 + (TCTCC)n Simple_repeat Simple_repeat 2 119 0 1 1138 3832 204 51 14 chr12 72513029 72513868 -48743662 - RMER1A Other Other -12 1018 28 2 1138 555 102 0 0 chr12 72514175 72514263 -48743267 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1138 799 261 114 0 chr12 72514293 72514477 -48743053 - B4 SINE B4 -87 205 1 2 1138 195 42 0 0 chr12 72514651 72514675 -48742855 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1138 2559 147 156 14 chr12 72515141 72515653 -48741877 + RMER4B LTR ERVK 1 585 0 2 1138 185 212 79 0 chr12 72515793 72515850 -48741680 + MIRc SINE MIR 120 187 -81 2 1138 469 284 174 10 chr12 72515882 72516078 -48741452 + MIR SINE MIR 15 242 -20 2 1138 1005 130 0 0 chr12 72516445 72516607 -48740923 + (TG)n Simple_repeat Simple_repeat 2 163 0 2 1138 407 353 7 22 chr12 72516616 72516755 -48740775 - RSINE1 SINE B4 -17 148 12 2 1138 1545 202 78 35 chr12 72516838 72517186 -48740344 + ORR1D1 LTR MaLR 1 363 -11 2 1138 240 281 0 0 chr12 72517190 72517247 -48740283 + Cheshire DNA MER1_type 2362 2418 -2 3 1138 312 293 80 19 chr12 72517710 72517861 -48739669 - MIRb SINE MIR -115 161 3 3 1138 198 0 0 0 chr12 72518000 72518022 -48739508 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1138 390 21 0 0 chr12 72518317 72518364 -48739166 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1138 344 264 11 49 chr12 72518368 72518451 -48739079 + (CATA)n Simple_repeat Simple_repeat 3 81 0 3 1138 195 42 0 0 chr12 72518451 72518475 -48739055 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1138 344 264 11 49 chr12 72518475 72518484 -48739046 + (CATA)n Simple_repeat Simple_repeat 2 10 0 3 1138 236 100 25 0 chr12 72518484 72518524 -48739006 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1138 344 264 11 49 chr12 72518524 72518613 -48738917 + (CATA)n Simple_repeat Simple_repeat 3 89 0 3 1138 569 307 168 22 chr12 72519651 72520021 -48737509 - Kanga2_a DNA Tc2 -68 820 397 3 1138 1776 320 70 23 chr12 72520034 72521026 -48736504 - Lx8 LINE L1 -30 7443 6362 4 1138 3169 37 39 3 chr12 72521026 72521408 -48736122 - MTA_Mm LTR MaLR 0 396 1 4 1138 1309 336 98 39 chr12 72521408 72521455 -48736075 - Lx8 LINE L1 -1335 6361 6318 4 1138 1108 266 22 70 chr12 72521471 72521874 -48735656 + Lx7 LINE L1 5543 5928 -1545 4 1138 327 104 0 0 chr12 72521903 72521951 -48735579 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1138 1077 189 26 14 chr12 72522143 72522653 -48734877 - RMER17C LTR ERVK 0 410 1 4 1138 474 282 19 39 chr12 72522973 72523128 -48734402 - RSINE1 SINE B4 -13 152 1 4 1138 254 314 248 10 chr12 72523130 72523336 -48734194 - Kanga2_a DNA Tc2 -633 255 1 3 1138 354 195 0 0 chr12 72523739 72523826 -48733704 + (CAT)n Simple_repeat Simple_repeat 3 89 0 4 1138 186 312 0 30 chr12 72523994 72524060 -48733470 + L3 LINE CR1 1617 1680 -2809 4 1138 202 227 233 22 chr12 72524581 72524671 -48732859 - MIR3 SINE MIR -6 202 94 4 1138 940 148 0 16 chr12 72525583 72525846 -48731684 + CT-rich Low_complexity Low_complexity 1 258 0 4 1138 495 158 24 0 chr12 72525849 72525931 -48731599 - B1_Mur2 SINE Alu -9 140 57 5 1138 365 20 0 39 chr12 72527026 72527077 -48730453 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 5 1138 194 267 107 121 chr12 72527907 72528056 -48729474 - MIR SINE MIR -70 192 46 5 1138 1070 184 52 0 chr12 72528433 72528645 -48728885 - URR1B DNA MER1_type 0 225 3 5 1138 321 26 0 0 chr12 72528736 72528774 -48728756 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1138 204 289 64 26 chr12 72529323 72529401 -48728129 - L2a LINE L2 -43 3383 3303 5 1138 423 0 0 0 chr12 72529425 72529472 -48728058 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1138 183 42 0 0 chr12 72529472 72529495 -48728035 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1138 358 324 103 0 chr12 72529510 72529646 -48727884 - B4A SINE B4 -20 272 123 5 1138 234 330 32 32 chr12 72530402 72530496 -48727034 - MIR SINE MIR -68 194 101 5 1138 252 292 57 24 chr12 72530992 72531115 -48726415 + MER5A1 DNA MER1_type 1 127 -39 6 1138 23 0 0 0 chr12 72531775 72531798 -48725732 + AT_rich Low_complexity Low_complexity 1 23 0 6 1138 1128 158 57 14 chr12 72532969 72533181 -48724349 + URR1B DNA MER1_type 5 225 0 6 1138 448 221 109 62 chr12 72533008 72533201 -48724329 - CYRA11_Mm Unknown Y-chromosome -272 345 144 6 1138 314 253 53 0 chr12 72533476 72533551 -48723979 + MIRb SINE MIR 119 197 -71 6 1138 250 128 130 14 chr12 72534226 72534292 -48723238 + MIR SINE MIR 80 148 -120 6 1138 574 286 0 0 chr12 72535421 72535547 -48721983 + RSINE1 SINE B4 3 128 -37 6 1138 1034 241 126 15 chr12 72535628 72535969 -48721561 - MTEb LTR MaLR 0 379 1 6 1138 1670 180 51 33 chr12 72536223 72536430 -48721100 - RMER10B LTR ERVL 0 398 200 6 1138 629 58 12 0 chr12 72536430 72536516 -48721014 + (GA)n Simple_repeat Simple_repeat 1 87 0 6 1138 1670 180 51 33 chr12 72536516 72536699 -48720831 - RMER10B LTR ERVL -199 199 1 6 1138 279 247 14 0 chr12 72536770 72536843 -48720687 + (TATG)n Simple_repeat Simple_repeat 2 75 0 7 1138 581 260 136 28 chr12 72536914 72537128 -48720402 - Charlie8 DNA MER1_type -2163 265 29 7 1138 374 239 165 17 chr12 72537444 72537559 -48719971 + MIRb SINE MIR 47 178 -90 7 1138 697 194 12 0 chr12 72538178 72538343 -48719187 + (TG)n Simple_repeat Simple_repeat 2 168 0 7 1138 1094 23 0 0 chr12 72539841 72539970 -48717560 - B1_Mm SINE Alu -6 141 13 7 1138 2666 219 45 40 chr12 72540136 72540844 -48716686 - Lx9 LINE L1 -6 7638 6927 7 1138 291 85 0 0 chr12 72540844 72540891 -48716639 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 7 1138 216 0 0 0 chr12 72540889 72540913 -48716617 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 1138 230 132 19 0 chr12 72540910 72540963 -48716567 + T-rich Low_complexity Low_complexity 4 57 0 7 1138 1205 54 0 20 chr12 72540976 72541126 -48716404 - B1_Mm SINE Alu 0 147 1 7 1138 500 270 17 17 chr12 72541127 72541244 -48716286 - B1_Mur1 SINE Alu 0 149 33 8 1138 315 0 0 0 chr12 72541280 72541315 -48716215 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1138 379 155 24 0 chr12 72541754 72541838 -48715692 + (TG)n Simple_repeat Simple_repeat 1 86 0 8 1138 585 259 194 12 chr12 72541886 72542128 -48715402 - B4A SINE B4 -4 288 3 8 1138 215 352 46 39 chr12 72542175 72542305 -48715225 - MIR SINE MIR -59 203 73 8 1138 214 317 82 27 chr12 72542394 72542540 -48714990 + L2b LINE L2 2914 3067 -352 8 1138 631 315 64 82 chr12 72544256 72544633 -48712897 - ORR1E LTR MaLR 0 370 1 8 1138 2253 137 83 23 chr12 72544831 72545228 -48712302 - MTC LTR MaLR 0 421 1 8 1138 436 323 270 22 chr12 72545363 72545762 -48711768 - L2 LINE L2 -737 2682 2163 8 1138 1699 26 0 0 chr12 72545762 72545954 -48711576 - B2_Mm1a SINE B2 0 193 2 8 1138 436 323 270 22 chr12 72545954 72546143 -48711387 - L2 LINE L2 -1257 2162 1948 8 1138 348 307 84 26 chr12 72546139 72546293 -48711237 + L2 LINE L2 2249 2411 -1008 9 1138 284 78 39 0 chr12 72547869 72547920 -48709610 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 9 1138 387 326 119 14 chr12 72548905 72549123 -48708407 - MIRc SINE MIR -7 261 21 9 1138 214 350 78 0 chr12 72549438 72549541 -48707989 + L2 LINE L2 2367 2477 -942 9 1138 215 175 158 0 chr12 72551420 72551477 -48706053 - MIRb SINE MIR -15 253 188 9 1138 189 74 0 0 chr12 72551518 72551545 -48705985 + (CCCA)n Simple_repeat Simple_repeat 2 28 0 9 1138 188 0 0 69 chr12 72551972 72552001 -48705529 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 9 1138 321 216 49 28 chr12 72552463 72552606 -48704924 - Lx9 LINE L1 -7 7637 7492 9 1138 234 0 0 0 chr12 72552612 72552638 -48704892 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1138 3176 252 83 48 chr12 72552638 72553662 -48703868 - Lx9 LINE L1 -197 7447 6388 9 1138 713 291 54 21 chr12 72554046 72554415 -48703115 - L1MA4 LINE L1 -267 6033 5639 9 1138 400 255 0 0 chr12 72554416 72554510 -48703020 - MIRb SINE MIR -8 260 167 9 1138 463 256 0 0 chr12 72555025 72555127 -48702403 - PB1 SINE Alu -94 217 26 1 1138 186 128 0 0 chr12 72556222 72556261 -48701269 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 1138 267 306 20 0 chr12 72557144 72557242 -48700288 - MIRb SINE MIR -81 187 88 9 1138 675 228 52 47 chr12 72558437 72558630 -48698900 - B3A SINE B2 0 198 5 1 1138 260 240 161 24 chr12 72558704 72558828 -48698702 - MER117 DNA MER1_type -50 147 7 1 1138 197 278 0 18 chr12 72558939 72558994 -48698536 + MER5A DNA MER1_type 136 189 0 1 1138 301 260 30 8 chr12 72562420 72562552 -48694978 + (TCTTG)n Simple_repeat Simple_repeat 5 139 0 1 1138 228 86 0 0 chr12 72563413 72563448 -48694082 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1138 198 118 0 0 chr12 72563452 72563486 -48694044 + (TATG)n Simple_repeat Simple_repeat 4 37 0 1 1138 240 241 0 33 chr12 72563491 72563551 -48693979 - RSINE1 SINE B4 0 165 108 1 1138 343 317 102 74 chr12 72563525 72563739 -48693791 - B4 SINE B4 -14 278 59 1 1138 1404 154 3 42 chr12 72563739 72564023 -48693507 + RMER4B LTR ERVK 1 273 -312 1 1138 334 292 138 0 chr12 72564152 72564282 -48693248 - B1F SINE Alu -1 148 1 1 1138 1235 27 0 27 chr12 72564315 72564465 -48693065 + B1_Mm SINE Alu 2 147 0 1 1138 1989 202 0 3 chr12 72564552 72564925 -48692605 - RLTR14 LTR ERV1 -10 372 1 1 1138 186 118 0 0 chr12 72565044 72565078 -48692452 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 1 1138 222 208 0 20 chr12 72565078 72565127 -48692403 + CT-rich Low_complexity Low_complexity 2 49 0 1 1138 329 310 24 22 chr12 72565437 72565620 -48691910 + L1MD LINE L1 5407 5599 -643 1 1138 391 215 190 0 chr12 72565627 72565748 -48691782 + RSINE1 SINE B4 1 144 -21 1 1138 180 0 0 0 chr12 72566602 72566622 -48690908 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1138 189 0 0 0 chr12 72566928 72566949 -48690581 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1138 721 354 43 20 chr12 72567021 72567321 -48690209 + Tigger7 DNA MER2_type 1 307 -2184 1 1138 290 164 164 0 chr12 72567633 72567694 -48689836 + MTE2b LTR MaLR 1 71 -308 1 1138 628 269 82 75 chr12 72567817 72568123 -48689407 + MTE2b LTR MaLR 61 368 -11 1 1138 25 0 0 0 chr12 72568242 72568267 -48689263 + AT_rich Low_complexity Low_complexity 1 25 0 1 1138 546 229 275 17 chr12 72568267 72568445 -48689085 + ID_B1 SINE B4 1 224 0 1 1138 210 37 0 0 chr12 72568524 72568551 -48688979 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1138 1489 203 141 12 chr12 72568563 72568982 -48688548 - Lx9 LINE L1 -24 7620 7148 1 1138 656 247 104 31 chr12 72570421 72570613 -48686917 + ID_B1 SINE B4 3 208 -16 1 1138 2320 231 6 48 chr12 72570702 72571244 -48686286 - Lx5 LINE L1 0 7050 6532 1 1138 448 145 0 0 chr12 72571297 72571373 -48686157 + B2_Mm2 SINE B2 2 77 -118 1 1138 214 256 58 58 chr12 72571373 72571384 -48686146 + B4 SINE B4 2 88 -204 1 1138 1855 144 30 3 chr12 72571501 72571801 -48685729 - RLTR10E LTR ERVK -3 308 1 1 1138 905 198 0 40 chr12 72573179 72573213 -48684317 - MTC LTR MaLR -8 413 385 1 1138 1852 126 55 61 chr12 72573213 72573543 -48683987 - ORR1A4 LTR MaLR 0 329 2 1 1138 905 198 0 40 chr12 72573543 72573708 -48683822 - MTC LTR MaLR -37 384 222 1 1138 1592 108 7 48 chr12 72573708 72573980 -48683550 - Lx4A LINE L1 -1110 5948 5688 1 1138 4882 123 15 21 chr12 72573980 72574113 -48683417 + Lx4B LINE L1 6312 6441 -617 1 1138 3002 81 42 0 chr12 72574113 72574497 -48683033 + MTB LTR MaLR 1 400 0 1 1138 4882 123 15 21 chr12 72574497 72575113 -48682417 + Lx4B LINE L1 6442 7056 -2 1 1138 3797 82 3 99 chr12 72575421 72576048 -48681482 + Lx3A LINE L1 6412 6978 -3 1 1138 312 130 43 0 chr12 72577683 72577752 -48679778 + CT-rich Low_complexity Low_complexity 2 73 0 1 1138 427 295 0 0 chr12 72577753 72577865 -48679665 - PB1D10 SINE Alu -5 112 1 1 1138 236 243 86 0 chr12 72577898 72577968 -48679562 - Tigger5 DNA MER2_type -2327 79 4 1 1138 400 272 31 39 chr12 72579227 72579357 -48678173 - L2b LINE L2 -3 3372 3244 1 1138 368 241 9 0 chr12 72579788 72579904 -48677626 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 1138 445 282 143 52 chr12 72580684 72581013 -48676517 + ORR1E LTR MaLR 1 359 0 1 1138 1360 270 39 48 chr12 72581633 72582096 -48675434 + MLT2C2 LTR ERVL 2 460 -4 1 1138 219 333 0 51 chr12 72583697 72583795 -48673735 + G-rich Low_complexity Low_complexity 1 93 0 1 1138 1035 101 0 39 chr12 72585059 72585213 -48672317 + B1_Mus1 SINE Alu 1 148 0 1 1138 849 306 50 0 chr12 72585394 72585672 -48671858 + B4A SINE B4 1 292 0 1 1138 240 184 0 0 chr12 72585682 72585731 -48671799 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1138 939 129 7 26 chr12 72585850 72585862 -48671668 - B1_Mur4 SINE Alu 0 150 141 1 1138 216 67 0 0 chr12 72585862 72585892 -48671638 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 1138 939 129 7 26 chr12 72585892 72586030 -48671500 - B1_Mur4 SINE Alu -10 140 3 1 1138 585 206 249 0 chr12 72586388 72586553 -48670977 - B3 SINE B2 -8 208 3 1 1138 23 0 0 0 chr12 72586759 72586782 -48670748 + AT_rich Low_complexity Low_complexity 1 23 0 1 1138 764 241 93 71 chr12 72587256 72587624 -48669906 - MTEb LTR MaLR -1 358 1 1 1138 1101 257 123 19 chr12 72588036 72588401 -48669129 + MLT1A1 LTR MaLR 6 408 0 1 1138 856 76 15 15 chr12 72588442 72588576 -48668954 + (TCCCC)n Simple_repeat Simple_repeat 3 136 0 1 1138 375 87 29 14 chr12 72588582 72588652 -48668878 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 1 1138 357 304 16 16 chr12 72588669 72588793 -48668737 - B1F2 SINE Alu -20 130 2 1 1138 1376 208 81 20 chr12 72589023 72589367 -48668163 + ORR1D2 LTR MaLR 5 369 -1 1 1138 232 303 124 18 chr12 72589793 72589925 -48667605 + MIR SINE MIR 6 153 -55 1 1138 219 239 45 0 chr12 72590081 72590148 -48667382 + PB1D10 SINE Alu 46 115 -2 1 1138 288 0 0 0 chr12 72590169 72590201 -48667329 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1138 301 326 20 30 chr12 72590506 72590593 -48666937 - RLTR18B LTR ERVK -30 482 397 1 1138 546 181 0 87 chr12 72590593 72590708 -48666822 + MTC LTR MaLR 2 106 -315 1 1138 913 97 27 14 chr12 72590740 72590887 -48666643 + RLTR18B LTR ERVK 4 152 -360 1 1138 530 311 96 47 chr12 72591219 72591624 -48665906 + LTR40a LTR ERVL 69 493 -26 1 1138 303 239 0 15 chr12 72591717 72591785 -48665745 - BC1_Mm scRNA scRNA -85 67 1 1 1138 256 307 82 77 chr12 72592291 72592524 -48665006 - MIRb SINE MIR -12 256 23 1 1138 229 44 0 82 chr12 72593276 72593325 -48664205 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 1 1138 235 191 97 56 chr12 72593414 72593486 -48664044 - L2a LINE L2 0 3426 3352 1 1138 1874 130 0 132 chr12 72593508 72593923 -48663607 - ORR1B1 LTR MaLR 0 394 1 1 1138 23 0 0 0 chr12 72594379 72594402 -48663128 + AT_rich Low_complexity Low_complexity 1 23 0 1 1138 217 151 38 0 chr12 72594651 72594704 -48662826 + (CATA)n Simple_repeat Simple_repeat 1 55 0 1 1138 244 158 72 40 chr12 72594795 72594988 -48662542 + (CACAT)n Simple_repeat Simple_repeat 1 199 0 1 1138 458 291 17 22 chr12 72594900 72595122 -48662408 + (CA)n Simple_repeat Simple_repeat 1 220 0 1 1138 225 320 134 0 chr12 72595281 72595378 -48662152 - PB1D9 SINE Alu -6 114 5 1 1138 213 94 0 0 chr12 72596286 72596318 -48661212 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1138 706 255 25 46 chr12 72596653 72596850 -48660680 - B3 SINE B2 -22 194 2 1 1138 565 307 151 23 chr12 72596853 72597243 -48660287 + L1MA6 LINE L1 5861 6300 0 1 1138 372 249 249 44 chr12 72597268 72597449 -48660081 + ID_B1 SINE B4 2 219 -5 1 1138 362 306 16 24 chr12 72597576 72597703 -48659827 + MER44B DNA MER2_type 2 127 -423 1 1138 1360 190 156 15 chr12 72597677 72597841 -48659689 - ORR1C2 LTR MaLR -12 372 168 1 1138 465 19 0 0 chr12 72597841 72597895 -48659635 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1138 1360 190 156 15 chr12 72597895 72598056 -48659474 - ORR1C2 LTR MaLR -217 167 2 1 1138 1090 259 102 73 chr12 72598057 72598470 -48659060 + MER44B DNA MER2_type 99 523 -27 1 1138 250 283 89 32 chr12 72600269 72600426 -48657104 - MLT1N2 LTR MaLR -9 553 388 1 1138 1972 201 29 7 chr12 72601106 72601516 -48656014 - MTD LTR MaLR 0 419 1 1 1138 664 274 58 34 chr12 72601601 72601833 -48655697 - ID_B1 SINE B4 0 292 62 1 1138 740 241 20 59 chr12 72601819 72602022 -48655508 - B4 SINE B4 -95 197 3 1 1138 276 306 31 24 chr12 72602049 72602176 -48655354 + MIR SINE MIR 133 260 -2 1 1138 534 31 0 0 chr12 72602543 72602607 -48654923 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1138 709 243 83 0 chr12 72603446 72603627 -48653903 + ID_B1 SINE B4 1 196 -28 1 1138 2773 118 90 107 chr12 72604620 72605199 -48652331 - RMER4B LTR ERVK 0 585 17 1 1138 1031 259 34 36 chr12 72605728 72606084 -48651446 - L1MB4 LINE L1 -6 6174 5820 1 1138 274 163 0 0 chr12 72606160 72606209 -48651321 - L1M3 LINE L1 -460 5831 5783 1 1138 198 0 0 0 chr12 72606209 72606231 -48651299 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1138 320 0 25 0 chr12 72606257 72606297 -48651233 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1138 446 300 57 29 chr12 72606298 72606542 -48650988 - L1M3 LINE L1 -392 5788 5538 1 1138 205 205 0 0 chr12 72607103 72607142 -48650388 + T-rich Low_complexity Low_complexity 1 39 0 1 1138 288 0 0 0 chr12 72607600 72607632 -48649898 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1138 492 32 0 0 chr12 72608052 72608114 -48649416 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1138 242 325 33 8 chr12 72608198 72608319 -48649211 - RMER15 LTR ERVL -95 480 357 1 1138 201 39 0 0 chr12 72608347 72608373 -48649157 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1138 27 0 0 0 chr12 72608999 72609026 -48648504 + AT_rich Low_complexity Low_complexity 1 27 0 1 1138 191 36 36 0 chr12 72609232 72609260 -48648270 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1138 786 239 137 45 chr12 72609341 72609678 -48647852 - RLTR9A LTR ERVK 0 368 1 2 1138 1262 237 150 23 chr12 72610006 72610085 -48647445 - RLTR20A LTR ERVK 0 541 443 2 1138 432 0 0 0 chr12 72610085 72610133 -48647397 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1138 1262 237 150 23 chr12 72610133 72610533 -48646997 - RLTR20A LTR ERVK -99 442 2 2 1138 562 192 54 25 chr12 72610652 72610813 -48646717 - RLTR42-int LTR ERVK -3731 1791 1639 2 1138 344 135 14 0 chr12 72611879 72611953 -48645577 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 2 1138 743 126 40 134 chr12 72612476 72612678 -48644852 + ORR1C2 LTR MaLR 1 183 -191 2 1138 421 141 12 12 chr12 72612684 72612770 -48644760 + CT-rich Low_complexity Low_complexity 2 87 0 2 1138 971 156 58 39 chr12 72612772 72612979 -48644551 + ORR1C2 LTR MaLR 174 384 0 2 1139 261 308 117 0 chr12 72614136 72614256 -48643274 + MIR SINE MIR 13 146 -116 2 1139 242 336 19 9 chr12 72614256 72614361 -48643169 - MLT1H1 LTR MaLR -2 589 484 2 1139 1267 144 5 5 chr12 72614509 72614718 -48642812 - URR1B DNA MER1_type 0 225 17 2 1139 274 255 174 56 chr12 72614724 72614919 -48642611 - MLT1H1 LTR MaLR -337 218 1 2 1139 222 253 6 6 chr12 72614922 72614997 -48642533 + MIRb SINE MIR 143 221 -47 2 1139 527 283 128 53 chr12 72615008 72615273 -48642257 - RMER15 LTR ERVL -15 560 276 2 1139 230 293 160 10 chr12 72615616 72615716 -48641814 + Tigger5 DNA MER2_type 132 246 -2160 2 1139 346 247 45 0 chr12 72615733 72615822 -48641708 + Tigger5 DNA MER2_type 2312 2404 -2 2 1139 1411 265 41 8 chr12 72616001 72616393 -48641137 + MTD LTR MaLR 14 418 -1 2 1139 513 0 0 0 chr12 72616421 72616478 -48641052 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1139 1324 91 32 5 chr12 72616841 72617029 -48640501 - B2_Mm2 SINE B2 -2 193 1 2 1139 21 0 0 0 chr12 72618029 72618050 -48639480 + AT_rich Low_complexity Low_complexity 1 21 0 2 1139 195 280 80 0 chr12 72618524 72618599 -48638931 - MIR SINE MIR -123 139 59 2 1139 441 0 0 0 chr12 72618645 72618694 -48638836 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1139 196 159 0 43 chr12 72619623 72619669 -48637861 - MIR SINE MIR -122 140 97 2 1139 372 94 0 0 chr12 72619702 72619755 -48637775 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 2 1139 408 20 0 0 chr12 72619916 72619965 -48637565 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1139 612 315 0 0 chr12 72619990 72620152 -48637378 - B3A SINE B2 -35 163 2 2 1139 853 136 12 6 chr12 72620983 72621146 -48636384 + GA-rich Low_complexity Low_complexity 6 169 0 2 1139 270 270 16 0 chr12 72621146 72621209 -48636321 + A-rich Low_complexity Low_complexity 3 66 0 2 1139 276 137 0 0 chr12 72621698 72621749 -48635781 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 1139 728 306 84 62 chr12 72621803 72622207 -48635323 - MLT1C LTR MaLR -53 414 2 2 1139 426 276 8 8 chr12 72622625 72622742 -48634788 - PB1D10 SINE Alu 0 117 1 2 1139 293 337 0 11 chr12 72623098 72623191 -48634339 + MLT1G1 LTR MaLR 214 305 -274 2 1139 285 244 43 32 chr12 72623303 72623396 -48634134 + MLT1G1 LTR MaLR 486 579 0 2 1139 248 229 157 0 chr12 72623396 72623466 -48634064 - MIR SINE MIR -117 145 65 2 1139 477 90 0 0 chr12 72624290 72624357 -48633173 + (CTCA)n Simple_repeat Simple_repeat 1 67 0 2 1139 320 305 128 0 chr12 72624357 72624498 -48633032 - RSINE1 SINE B4 -3 162 4 2 1139 627 51 0 0 chr12 72624556 72624635 -48632895 + (TCCC)n Simple_repeat Simple_repeat 2 80 0 2 1139 528 93 0 0 chr12 72624654 72624729 -48632801 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 2 1139 216 0 0 0 chr12 72625711 72625735 -48631795 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1139 503 310 39 0 chr12 72625741 72625896 -48631634 - B3A SINE B2 -30 168 8 2 1139 229 224 0 0 chr12 72626026 72626075 -48631455 + ID4 SINE ID 3 51 -32 2 1139 290 300 22 0 chr12 72627788 72627878 -48629652 + (TG)n Simple_repeat Simple_repeat 1 92 0 2 1139 246 128 0 0 chr12 72628773 72628812 -48628718 + (CAA)n Simple_repeat Simple_repeat 3 41 0 2 1139 308 268 34 23 chr12 72628818 72628906 -48628624 - B1F1 SINE Alu -58 91 3 2 1139 256 287 31 31 chr12 72629168 72629265 -48628265 + MIRc SINE MIR 52 148 -120 2 1139 928 289 71 31 chr12 72629408 72629733 -48627797 - MER2 DNA MER2_type -3 342 5 2 1139 297 274 112 9 chr12 72630273 72630380 -48627150 - Charlie16a DNA MER1_type -61 281 164 2 1139 747 315 92 39 chr12 72630630 72630990 -48626540 + MTEa LTR MaLR 1 379 0 2 1139 262 171 0 0 chr12 72631291 72631332 -48626198 + Lx8 LINE L1 6919 6959 -514 2 1139 1049 290 49 61 chr12 72631742 72632270 -48625260 + Lx8 LINE L1 6950 7471 -2 2 1139 2480 66 28 3 chr12 72632297 72632616 -48624914 - ORR1A2 LTR MaLR 0 327 1 2 1139 249 257 0 28 chr12 72632624 72632696 -48624834 + L1M5 LINE L1 5542 5611 -513 2 1139 235 338 12 12 chr12 72632697 72632778 -48624752 - ID4 SINE ID -1 82 2 2 1139 189 0 0 0 chr12 72634655 72634676 -48622854 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1139 1189 186 46 5 chr12 72636297 72636513 -48621017 + URR1B DNA MER1_type 1 225 0 2 1139 2296 56 3 0 chr12 72636694 72636979 -48620551 - L1_Mus2 LINE L1 -575 5991 5706 2 1139 1232 144 9 27 chr12 72638612 72638833 -48618697 + URR1B DNA MER1_type 1 217 -8 2 1139 205 186 0 23 chr12 72638927 72638971 -48618559 + GA-rich Low_complexity Low_complexity 2 44 0 2 1139 720 301 103 56 chr12 72639199 72639219 -48618311 - MT2A LTR ERVL -4 529 511 2 1139 1314 176 14 0 chr12 72639219 72639441 -48618089 - URR1B DNA MER1_type 0 225 1 2 1139 720 301 103 56 chr12 72639441 72639923 -48617607 - MT2A LTR ERVL -23 510 3 2 1139 302 313 8 42 chr12 72640679 72640799 -48616731 + MIR SINE MIR 111 226 -36 2 1139 1445 58 21 5 chr12 72640903 72641095 -48616435 + B2_Mm2 SINE B2 1 195 0 2 1139 281 292 27 74 chr12 72641282 72641430 -48616100 - MLT1A1 LTR MaLR 0 408 268 2 1139 844 146 270 0 chr12 72642242 72642420 -48615110 - URR1A DNA MER1_type 0 226 1 2 1139 332 342 136 27 chr12 72642593 72642924 -48614606 - L2a LINE L2 -38 3388 3022 2 1139 379 231 267 6 chr12 72643355 72643516 -48614014 + RMER15 LTR ERVL 276 478 -97 2 1139 351 0 0 0 chr12 72644139 72644178 -48613352 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1139 273 302 27 36 chr12 72644487 72644597 -48612933 - MIRb SINE MIR -21 247 139 2 1139 275 0 29 0 chr12 72644792 72644827 -48612703 + (CAAT)n Simple_repeat Simple_repeat 3 38 0 2 1139 419 300 0 35 chr12 72644843 72644957 -48612573 + B1F SINE Alu 1 110 -39 2 1139 329 299 75 88 chr12 72644957 72644989 -48612541 + B4 SINE B4 86 229 -63 2 1139 333 0 0 0 chr12 72645142 72645179 -48612351 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1139 1056 59 0 0 chr12 72645234 72645370 -48612160 + (TC)n Simple_repeat Simple_repeat 2 137 0 2 1139 499 246 88 14 chr12 72645403 72645551 -48611979 - RSINE1 SINE B4 -4 161 3 2 1139 1629 311 43 24 chr12 72645552 72646317 -48611213 - L1MA5 LINE L1 -25 6275 5496 2 1139 408 259 56 0 chr12 72646390 72646498 -48611032 - B1F SINE Alu -11 138 25 2 1139 569 241 36 0 chr12 72646571 72646708 -48610822 - ID_B1 SINE B4 0 224 83 2 1139 669 90 0 26 chr12 72646710 72646824 -48610706 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 2 1139 1152 69 0 0 chr12 72646824 72646969 -48610561 - B1_Mm SINE Alu 0 147 3 2 1139 1028 207 22 79 chr12 72647000 72647267 -48610263 - RMER1C Other Other 0 1342 1091 2 1139 257 51 26 0 chr12 72647267 72647306 -48610224 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 2 1139 1012 239 63 90 chr12 72647309 72647383 -48610147 - RMER1C Other Other -231 1111 1040 2 1139 731 266 42 37 chr12 72647383 72647598 -48609932 - B3 SINE B2 0 216 1 2 1139 1012 239 63 90 chr12 72647598 72647858 -48609672 - RMER1C Other Other -303 1039 786 2 1139 1158 245 92 17 chr12 72648178 72648202 -48609328 - RMER1B Other Other -156 910 877 2 1139 324 0 0 0 chr12 72648202 72648238 -48609292 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1139 1158 245 92 17 chr12 72648238 72648508 -48609022 - RMER1B Other Other -190 876 594 2 1139 2587 282 55 26 chr12 72648589 72649681 -48607849 - L1MA5 LINE L1 -1414 4729 3606 2 1139 604 301 109 82 chr12 72650012 72650378 -48607152 - MTEa LTR MaLR 0 379 4 2 1139 999 263 63 43 chr12 72651382 72651638 -48605892 - ORR1E LTR MaLR 0 359 97 2 1139 848 161 155 94 chr12 72651638 72651851 -48605679 - URR1A DNA MER1_type 0 226 1 2 1139 999 263 63 43 chr12 72651851 72651944 -48605586 - ORR1E LTR MaLR -263 96 3 2 1139 419 194 75 11 chr12 72653844 72653938 -48603592 + B1F SINE Alu 15 114 -35 2 1139 230 282 169 40 chr12 72654442 72654590 -48602940 + MIRc SINE MIR 24 193 -75 2 1139 290 311 41 30 chr12 72654951 72655120 -48602410 - MER34 LTR ERV1 -68 474 304 2 1139 1341 191 98 68 chr12 72655908 72656118 -48601412 + RMER17C LTR ERVK 1 193 -217 2 1139 234 81 0 0 chr12 72656118 72656155 -48601375 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 2 1139 1341 191 98 68 chr12 72656155 72656342 -48601188 + RMER17C LTR ERVK 194 410 0 2 1139 302 298 14 67 chr12 72656858 72657026 -48600504 + MLT1D LTR MaLR 249 396 -71 2 1139 1357 34 0 22 chr12 72657675 72657856 -48599674 + (TCTCCC)n Simple_repeat Simple_repeat 2 178 0 2 1139 194 62 0 30 chr12 72658025 72658058 -48599472 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2 1139 3066 29 0 0 chr12 72658059 72658405 -48599125 - ORR1A0 LTR MaLR 0 346 1 2 1139 966 131 65 0 chr12 72658435 72658601 -48598929 + RLTR28 LTR ERVL 1 177 -347 2 1139 3918 167 97 35 chr12 72658601 72659498 -48598032 + RMER19B LTR ERVK 1 891 -11 2 1139 1650 175 59 0 chr12 72659502 72659822 -48597708 + RLTR28 LTR ERVL 172 510 -14 2 1139 615 81 0 0 chr12 72659891 72659977 -48597553 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 1139 360 284 0 0 chr12 72660700 72660862 -48596668 + (CA)n Simple_repeat Simple_repeat 2 163 0 2 1139 472 364 46 55 chr12 72661546 72661872 -48595658 - MLT1A0 LTR MaLR 0 365 43 2 1139 271 326 7 71 chr12 72661990 72662145 -48595385 - MIR SINE MIR -13 249 105 2 1139 545 0 15 0 chr12 72662907 72662972 -48594558 + (CAAAT)n Simple_repeat Simple_repeat 1 66 0 2 1139 1878 246 91 42 chr12 72663112 72664000 -48593530 + RMER1A Other Other 1 515 -551 2 1139 4465 212 20 104 chr12 72664003 72665114 -48592416 + RMER1A Other Other 4 1020 -10 2 1139 261 0 0 0 chr12 72665119 72665148 -48592382 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1139 396 0 0 0 chr12 72665148 72665191 -48592339 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1139 313 323 94 6 chr12 72666467 72666626 -48590904 - MIRb SINE MIR -70 198 26 3 1139 1517 149 21 7 chr12 72666783 72667066 -48590464 - Lx5 LINE L1 0 7050 6764 3 1139 366 23 0 0 chr12 72667263 72667306 -48590224 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1139 268 346 54 16 chr12 72667642 72667771 -48589759 - Ricksha_c DNA MuDR -1554 494 361 3 1139 748 246 37 54 chr12 72667823 72668064 -48589466 + MTEa LTR MaLR 138 374 -5 3 1139 250 309 53 0 chr12 72668472 72668566 -48588964 - L2 LINE L2 -2885 534 436 3 1139 513 0 0 0 chr12 72669302 72669359 -48588171 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1139 270 73 0 0 chr12 72670255 72670296 -48587234 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1139 246 164 0 0 chr12 72670506 72670561 -48586969 + T-rich Low_complexity Low_complexity 1 55 0 3 1139 1188 138 16 5 chr12 72671227 72671416 -48586114 - B2_Mm2 SINE B2 -4 191 1 3 1139 835 174 158 31 chr12 72671466 72671662 -48585868 - URR1A DNA MER1_type -5 221 1 3 1139 757 224 53 114 chr12 72672286 72672513 -48585017 + ID_B1 SINE B4 1 213 -11 3 1139 246 358 58 69 chr12 72673245 72673521 -48584009 + MLT1I LTR MaLR 59 331 -80 3 1139 22 0 0 0 chr12 72675009 72675031 -48582499 + AT_rich Low_complexity Low_complexity 1 22 0 3 1139 820 288 51 60 chr12 72675953 72676304 -48581226 + MLT2C1 LTR ERVL 8 355 -42 3 1139 668 301 83 21 chr12 72676657 72676898 -48580632 + B4A SINE B4 24 279 -13 3 1139 291 93 0 0 chr12 72677046 72677089 -48580441 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1139 229 344 24 24 chr12 72677143 72677268 -48580262 - LTR89 LTR ERVL? -284 595 471 3 1139 635 305 111 16 chr12 72677687 72678110 -48579420 + MLT1C LTR MaLR 1 463 -4 3 1139 200 34 0 33 chr12 72678114 72678144 -48579386 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 3 1139 223 97 0 0 chr12 72678164 72678195 -48579335 + B3A SINE B2 5 35 -163 3 1139 812 234 133 45 chr12 72678202 72678578 -48578952 - RLTR9E LTR ERVK 0 409 1 3 1139 408 254 80 22 chr12 72678580 72678717 -48578813 + B3A SINE B2 39 183 -15 3 1139 218 163 0 0 chr12 72678816 72678859 -48578671 + B1_Mur3 SINE Alu 93 135 -14 3 1139 196 130 43 0 chr12 72678875 72678921 -48578609 + A-rich Low_complexity Low_complexity 3 50 0 3 1139 249 33 0 0 chr12 72680378 72680408 -48577122 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1139 809 266 15 0 chr12 72680433 72680632 -48576898 - ID_B1 SINE B4 -22 202 1 3 1139 850 156 13 33 chr12 72681028 72681180 -48576350 - B1_Mur2 SINE Alu 0 149 1 3 1139 250 321 61 44 chr12 72681564 72681678 -48575852 + MLT1F1 LTR MaLR 5 120 -428 3 1139 796 302 91 49 chr12 72681744 72682151 -48575379 + MLT1F1 LTR MaLR 146 569 0 3 1139 240 330 0 0 chr12 72682542 72682633 -48574897 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 1139 189 74 0 0 chr12 72682911 72682938 -48574592 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1139 369 0 0 0 chr12 72682938 72682978 -48574552 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1139 342 292 150 28 chr12 72682978 72683225 -48574305 + L1ME3A LINE L1 4628 4904 -1242 3 1139 1695 288 101 24 chr12 72683352 72684063 -48573467 - Lx8 LINE L1 -121 7352 6587 3 1139 261 254 109 22 chr12 72684076 72684213 -48573317 + L1MD LINE L1 4893 5041 -1105 3 1139 788 303 75 37 chr12 72684365 72684935 -48572595 + L1ME3A LINE L1 5274 5859 -314 3 1139 231 367 0 10 chr12 72685029 72685128 -48572402 + L1ME3A LINE L1 6024 6121 -58 3 1139 844 294 139 56 chr12 72686248 72686839 -48570691 - L1MA8 LINE L1 -368 6625 5986 3 1139 2946 283 122 31 chr12 72686860 72688757 -48568773 - L1MA8 LINE L1 -922 5920 3850 3 1139 7777 78 25 2 chr12 72688761 72690365 -48567165 + L1_Mus3 LINE L1 4998 6638 0 3 1139 505 307 63 4 chr12 72690369 72690637 -48566893 - L1MA8 LINE L1 -3022 3823 3540 3 1139 38612 31 0 0 chr12 72690625 72697257 -48560273 - L1Md_T LINE L1 0 6585 1 3 1139 652 305 84 14 chr12 72697306 72697675 -48559855 - L1MA8 LINE L1 -3324 3521 3127 3 1139 344 234 182 6 chr12 72697798 72697957 -48559573 - L1MA8 LINE L1 -3966 2883 2697 3 1139 26 64 0 0 chr12 72698094 72698141 -48559389 + AT_rich Low_complexity Low_complexity 1 47 0 3 1139 238 221 29 29 chr12 72698542 72698612 -48558918 + RLTR20C LTR ERVK 88 157 -377 3 1139 573 15 0 0 chr12 72698615 72698681 -48558849 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1139 1205 182 4 39 chr12 72699079 72699313 -48558217 - URR1A DNA MER1_type 0 226 1 3 1139 575 287 68 16 chr12 72700770 72700961 -48556569 + RMER15 LTR ERVL 274 474 -101 3 1139 187 87 43 21 chr12 72702013 72702060 -48555470 + A-rich Low_complexity Low_complexity 2 49 0 3 1139 400 281 191 12 chr12 72704974 72705136 -48552394 + B3A SINE B2 2 192 -24 3 1139 339 25 0 0 chr12 72705142 72705182 -48552348 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 3 1139 663 274 71 19 chr12 72705225 72705437 -48552093 + B4 SINE B4 1 223 -69 3 1139 774 32 0 0 chr12 72705771 72705864 -48551666 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 3 1139 2258 101 0 63 chr12 72706010 72706358 -48551172 + ORR1A3 LTR MaLR 1 326 0 3 1139 617 312 25 21 chr12 72706420 72706705 -48550825 - RLTR15 LTR ERVK -73 286 1 3 1139 295 261 294 19 chr12 72706705 72706864 -48550666 + MLT1J LTR MaLR 308 510 -2 3 1139 350 256 0 0 chr12 72707743 72707821 -48549709 + MIRc SINE MIR 67 144 -124 3 1139 272 196 0 0 chr12 72708161 72708217 -48549313 - MTD LTR MaLR 0 419 364 3 1139 341 274 24 24 chr12 72708340 72708467 -48549063 - B4A SINE B4 -163 129 3 3 1139 249 217 0 0 chr12 72708644 72708727 -48548803 + T-rich Low_complexity Low_complexity 1 83 0 3 1139 1219 27 7 14 chr12 72708728 72708876 -48548654 - B1_Mm SINE Alu 0 147 1 3 1139 681 221 194 136 chr12 72708951 72709297 -48548233 - MTD LTR MaLR 0 379 14 3 1139 298 275 27 34 chr12 72709815 72709962 -48547568 - L1MEc LINE L1 -6218 182 37 3 1139 398 356 37 19 chr12 72710148 72710471 -48547059 - L1M4 LINE L1 -851 5295 4967 3 1139 236 294 40 157 chr12 72710670 72710868 -48546662 - MTEa LTR MaLR 0 379 205 3 1139 611 148 32 16 chr12 72710940 72711064 -48546466 - Lx7 LINE L1 0 7696 7571 3 1139 1797 102 138 70 chr12 72711065 72711500 -48546030 + LTRIS5 LTR ERV1 1 512 0 3 1139 3683 201 184 12 chr12 72711501 72712379 -48545151 - Lx7 LINE L1 -130 7566 6538 3 1139 187 339 111 39 chr12 72713368 72713700 -48543830 + L2 LINE L2 2535 2890 -529 3 1139 182 67 89 0 chr12 72715047 72715092 -48542438 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1139 238 298 106 66 chr12 72715364 72715515 -48542015 - MLT2B5 LTR ERVL -206 395 239 3 1139 611 311 34 54 chr12 72715544 72715888 -48541642 - ORR1E LTR MaLR -12 367 15 3 1139 372 118 0 0 chr12 72715978 72716046 -48541484 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1139 476 318 91 48 chr12 72717183 72717513 -48540017 + MLT1A0 LTR MaLR 4 347 -18 3 1139 400 26 147 0 chr12 72717658 72717814 -48539716 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 3 1139 462 57 15 124 chr12 72717819 72718020 -48539510 + GA-rich Low_complexity Low_complexity 1 179 0 3 1139 516 7 137 0 chr12 72718038 72718191 -48539339 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 3 1139 2030 187 7 53 chr12 72718325 72718759 -48538771 - MTC LTR MaLR -7 414 1 3 1139 587 285 129 87 chr12 72719357 72719838 -48537692 - MLT1E LTR MaLR 0 653 153 3 1139 617 351 42 18 chr12 72719860 72720196 -48537334 + MLT1A0 LTR MaLR 7 350 -15 3 1139 367 75 0 70 chr12 72722308 72722394 -48535136 + (GGGGA)n Simple_repeat Simple_repeat 5 84 0 3 1139 237 261 0 0 chr12 72722394 72722463 -48535067 + GA-rich Low_complexity Low_complexity 1 69 0 3 1139 388 328 113 10 chr12 72723110 72723313 -48534217 + MER58A DNA MER1_type 1 224 0 3 1139 1355 121 9 35 chr12 72724014 72724246 -48533284 + URR1A DNA MER1_type 1 226 0 3 1139 315 228 0 48 chr12 72725215 72725298 -48532232 - MLT1D LTR MaLR -158 347 269 3 1139 252 0 0 0 chr12 72726423 72726451 -48531079 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1139 373 236 27 54 chr12 72726656 72726804 -48530726 + RSINE1 SINE B4 3 146 -19 3 1139 279 0 0 0 chr12 72726810 72726841 -48530689 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1139 213 39 0 0 chr12 72726841 72726867 -48530663 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1139 504 236 0 73 chr12 72727262 72727399 -48530131 - B4 SINE B4 0 292 166 3 1139 203 255 21 0 chr12 72728330 72728377 -48529153 + GA-rich Low_complexity Low_complexity 3 50 0 3 1139 384 248 106 0 chr12 72729048 72729189 -48528341 + LTR33A_ LTR ERVL 376 531 0 3 1139 283 96 19 19 chr12 72729401 72729454 -48528076 + (GGA)n Simple_repeat Simple_repeat 2 54 0 3 1139 191 234 63 33 chr12 72730696 72730786 -48526744 - MIR SINE MIR -63 145 53 3 1139 477 0 0 0 chr12 72731115 72731168 -48526362 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1139 180 135 0 0 chr12 72731268 72731305 -48526225 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 3 1139 1199 35 0 20 chr12 72731308 72731454 -48526076 - B1_Mm SINE Alu 0 147 5 3 1139 294 222 0 14 chr12 72731508 72731581 -48525949 + MTC LTR MaLR 321 392 -29 3 1139 1117 198 4 21 chr12 72732236 72732478 -48525052 - MTC LTR MaLR -183 238 1 3 1139 1088 271 4 43 chr12 72733398 72733653 -48523877 + B4 SINE B4 23 272 -20 3 1139 825 107 0 0 chr12 72733653 72733775 -48523755 + (CA)n Simple_repeat Simple_repeat 1 122 0 3 1139 1088 271 4 43 chr12 72733775 72733800 -48523730 + B4 SINE B4 273 292 0 3 1139 603 167 151 58 chr12 72733827 72733999 -48523531 - B2_Mm2 SINE B2 -7 188 1 3 1139 551 332 55 12 chr12 72734447 72734700 -48522830 - MLT1C LTR MaLR -4 463 200 3 1139 747 138 15 37 chr12 72735352 72735488 -48522042 - B1_Mur3 SINE Alu -1 148 16 3 1139 759 59 0 0 chr12 72735488 72735589 -48521941 + (CCA)n Simple_repeat Simple_repeat 2 102 0 3 1139 633 307 16 26 chr12 72737027 72737221 -48520309 - MLT1A0 LTR MaLR 0 365 174 3 1139 332 252 39 92 chr12 72737992 72738145 -48519385 + RSINE1 SINE B4 19 163 -2 4 1139 442 193 0 174 chr12 72738684 72738816 -48518714 - B1_Mur2 SINE Alu -18 131 23 4 1139 230 285 132 53 chr12 72739811 72739963 -48517567 - RSINE1 SINE B4 0 165 2 4 1139 319 261 32 11 chr12 72739987 72740080 -48517450 - L1MC4 LINE L1 -5 8037 7943 4 1139 243 0 0 0 chr12 72740134 72740161 -48517369 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 4 1139 336 333 18 0 chr12 72740308 72740422 -48517108 + Lx8 LINE L1 7179 7294 -179 4 1139 201 116 0 85 chr12 72740705 72740752 -48516778 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 4 1139 421 176 12 0 chr12 72740789 72740874 -48516656 + L1MB3 LINE L1 6098 6183 0 4 1139 238 329 145 45 chr12 72741301 72741543 -48515987 - MER21B LTR ERV1 -101 762 497 4 1139 32 26 0 0 chr12 72743051 72743090 -48514440 + AT_rich Low_complexity Low_complexity 1 39 0 4 142 317 315 36 51 chr12 72744775 72744983 -48512547 + L1M3e LINE L1 494 580 -6450 4 1140 1835 260 140 34 chr12 72745104 72745843 -48511687 + L1M3e LINE L1 5100 5931 -1172 4 1140 387 0 0 0 chr12 72745843 72745886 -48511644 + (CATAT)n Simple_repeat Simple_repeat 1 43 0 4 1140 1835 260 140 34 chr12 72745886 72745998 -48511532 + L1M3e LINE L1 5932 6040 -1063 4 1140 493 311 73 18 chr12 72746013 72746177 -48511353 + B4A SINE B4 2 174 -118 4 1140 273 57 0 0 chr12 72746192 72746227 -48511303 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1140 716 276 43 28 chr12 72746358 72746672 -48510858 + L1M3e LINE L1 6058 6386 -757 4 1140 229 239 24 0 chr12 72746708 72746781 -48510749 + PB1 SINE Alu 66 144 -5 4 1140 453 307 6 41 chr12 72747761 72747931 -48509599 + B4 SINE B4 1 164 -128 4 1140 279 0 0 0 chr12 72748038 72748069 -48509461 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1140 2502 141 103 27 chr12 72748070 72748557 -48508973 + RLTR11A2 LTR ERVK 1 524 -3 4 1140 2817 286 69 19 chr12 72748619 72748900 -48508630 + Lx8 LINE L1 6045 6335 -1138 4 1140 2366 102 9 0 chr12 72748900 72749223 -48508307 + ORR1A3 LTR MaLR 1 326 0 4 1140 2817 286 69 19 chr12 72749223 72749806 -48507724 + Lx8 LINE L1 6336 6958 -515 4 1140 1730 202 18 81 chr12 72749806 72750253 -48507277 + MTD LTR MaLR 1 419 0 4 1140 2817 286 69 19 chr12 72750253 72750272 -48507258 + Lx8 LINE L1 6959 6972 -501 4 1140 1671 280 148 39 chr12 72750268 72750958 -48506572 + Lx8 LINE L1 6580 7320 -153 4 1140 414 0 0 0 chr12 72750958 72751004 -48506526 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1140 1671 280 148 39 chr12 72751004 72751113 -48506417 + Lx8 LINE L1 7321 7466 -7 4 1140 1278 149 50 18 chr12 72751295 72751514 -48506016 - URR1A DNA MER1_type 0 226 1 4 1140 493 293 7 28 chr12 72751562 72751706 -48505824 + RSINE1 SINE B4 13 153 -12 4 1140 248 297 0 0 chr12 72753164 72753228 -48504302 + L1MA9 LINE L1 1579 1642 -4600 4 1140 828 298 75 19 chr12 72753731 72754209 -48503321 + L1MA9 LINE L1 2215 2729 -3417 4 1140 836 253 82 26 chr12 72754213 72754591 -48502939 + L1MA9 LINE L1 3048 3446 -2694 4 1140 1289 264 179 22 chr12 72754700 72755383 -48502147 + L1MA9 LINE L1 4639 5424 -876 4 1140 408 88 0 0 chr12 72755396 72755453 -48502077 + (TAA)n Simple_repeat Simple_repeat 3 59 0 4 1140 4701 165 52 10 chr12 72755466 72756336 -48501194 - RMER13B LTR ERVK 0 908 3 4 1140 505 307 38 19 chr12 72756409 72756618 -48500912 + L1MA9 LINE L1 5901 6113 -199 4 1140 460 331 25 82 chr12 72756665 72756984 -48500546 - MER47A DNA MER2_type -65 301 1 4 1140 345 156 0 0 chr12 72757025 72757102 -48500428 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1140 359 277 18 0 chr12 72757125 72757237 -48500293 + L1MA9 LINE L1 6189 6302 -10 4 1140 194 373 0 0 chr12 72757451 72757526 -48500004 + L2b LINE L2 3258 3332 -43 4 1140 653 342 105 35 chr12 72757582 72758012 -48499518 - MLT1G1 LTR MaLR -11 568 109 4 1140 1086 122 0 0 chr12 72758075 72758255 -48499275 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1140 485 294 51 19 chr12 72758510 72758666 -48498864 - B3A SINE B2 -37 161 1 4 1140 221 119 24 0 chr12 72760385 72760427 -48497103 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1140 233 299 15 0 chr12 72760457 72760524 -48497006 - B4A SINE B4 -10 282 215 4 1140 288 272 86 99 chr12 72761123 72761204 -48496326 + ID SINE ID 5 83 -141 4 1140 265 260 37 49 chr12 72761204 72761285 -48496245 + B1F2 SINE Alu 1 80 -69 4 1140 255 317 57 9 chr12 72761330 72761435 -48496095 - B3A SINE B2 -25 173 64 4 1140 252 0 0 0 chr12 72761806 72761834 -48495696 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 4 1140 309 330 93 0 chr12 72761853 72761950 -48495580 + B4A SINE B4 6 111 -181 4 1140 27 0 0 0 chr12 72762929 72762956 -48494574 + AT_rich Low_complexity Low_complexity 1 27 0 4 1140 953 171 7 149 chr12 72762958 72763247 -48494283 - Lx6 LINE L1 -40 7420 7173 4 1140 2419 51 0 0 chr12 72763695 72763990 -48493540 - L1_Mus1 LINE L1 -3 6564 6270 4 1140 371 342 39 26 chr12 72765371 72765524 -48492006 + RSINE1 SINE B4 3 157 -8 4 1140 184 0 97 0 chr12 72765525 72765556 -48491974 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 4 1140 206 200 33 0 chr12 72766633 72766693 -48490837 + T-rich Low_complexity Low_complexity 3 64 0 4 1140 259 296 0 0 chr12 72767370 72767451 -48490079 + B4 SINE B4 8 88 -204 4 1140 1174 62 0 0 chr12 72768677 72768821 -48488709 + B1_Mus2 SINE Alu 4 147 0 4 1140 191 61 30 0 chr12 72768821 72768854 -48488676 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4 1140 1561 180 58 7 chr12 72768869 72769177 -48488353 + Lx9 LINE L1 6581 6904 -740 4 1140 761 228 110 59 chr12 72769206 72769622 -48487908 - RMER2 LTR ERV1 -27 540 1 4 1140 1999 172 14 0 chr12 72769622 72769993 -48487537 - RLTR14 LTR ERV1 -6 376 1 4 1140 2840 194 90 4 chr12 72769993 72770676 -48486854 + Lx9 LINE L1 6901 7642 -2 4 1140 489 141 0 0 chr12 72772480 72772579 -48484951 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 1140 255 300 75 0 chr12 72772836 72772916 -48484614 - L1M5 LINE L1 -647 5593 5508 4 1140 185 133 0 62 chr12 72773380 72773428 -48484102 + CT-rich Low_complexity Low_complexity 1 45 0 4 1140 256 342 0 0 chr12 72773428 72773504 -48484026 - ID4 SINE ID -6 77 2 4 1140 267 275 22 0 chr12 72773908 72773999 -48483531 - L1MEf LINE L1 -4961 2141 2049 4 1140 229 338 28 14 chr12 72774230 72774374 -48483156 - L1MEf LINE L1 -5811 1523 1378 4 1140 1018 232 14 5 chr12 72774393 72774605 -48482925 + B3 SINE B2 3 216 0 4 1140 220 325 175 0 chr12 72774893 72775013 -48482517 - MIR3 SINE MIR -40 168 28 4 1140 218 364 93 0 chr12 72775387 72775538 -48481992 + MER5B DNA MER1_type 7 171 -7 4 1140 557 274 97 48 chr12 72775553 72775760 -48481770 + MER20 DNA MER1_type 1 217 -2 4 1140 323 256 47 64 chr12 72775933 72776104 -48481426 + L1M4 LINE L1 5165 5332 -814 4 1140 359 340 97 34 chr12 72776305 72776603 -48480927 - Charlie1a DNA MER1_type -1050 405 89 4 1140 273 227 25 51 chr12 72776680 72776759 -48480771 + ID4 SINE ID 5 81 -2 4 1140 2375 170 39 15 chr12 72777891 72778302 -48479228 - MTC LTR MaLR 0 421 1 4 1140 289 252 84 92 chr12 72778393 72778524 -48479006 - MLT1A1 LTR MaLR -278 130 1 4 1140 357 282 135 39 chr12 72778806 72779035 -48478495 + L1_Rod LINE L1 443 693 -6915 4 1140 4118 200 34 31 chr12 72779020 72780023 -48477507 + L1_Rod LINE L1 450 1459 -4388 4 1140 387 0 0 0 chr12 72780023 72780066 -48477464 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1140 1856 181 86 17 chr12 72780066 72780236 -48477294 + L1_Rod LINE L1 1460 1634 -4213 4 1140 10800 71 6 13 chr12 72780258 72782297 -48475233 + L1VL4 LINE L1 355 2380 -1179 4 1140 238 171 143 24 chr12 72782533 72782617 -48474913 + MER105 DNA DNA 95 188 -16 4 1140 278 237 48 191 chr12 72782830 72783035 -48474495 + L1MA6 LINE L1 6092 6285 -6 4 1140 216 97 0 0 chr12 72783053 72783084 -48474446 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 4 1140 582 281 48 10 chr12 72783289 72783497 -48474033 + L1_Rod LINE L1 2884 3099 -2748 4 1140 216 158 0 0 chr12 72783520 72783577 -48473953 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 4 1140 642 113 0 0 chr12 72783574 72783671 -48473859 + (GAA)n Simple_repeat Simple_repeat 3 99 0 4 1140 1607 176 135 25 chr12 72783692 72784129 -48473401 + L1_Rod LINE L1 3119 3603 -2244 4 1140 329 179 0 25 chr12 72784129 72784209 -48473321 + GA-rich Low_complexity Low_complexity 3 80 0 4 1140 299 227 20 218 chr12 72784209 72784298 -48473232 + L1_Rod LINE L1 3601 3679 -2461 4 1140 1199 68 0 14 chr12 72784298 72784446 -48473084 + B1_Mm SINE Alu 1 146 -1 4 1140 381 167 4 101 chr12 72784446 72784553 -48472977 + L1_Rod LINE L1 3656 3758 -2382 4 1140 3401 201 114 6 chr12 72784548 72785348 -48472182 + Lx9 LINE L1 6759 7644 0 4 1140 266 293 61 0 chr12 72785367 72785449 -48472081 + MLT1A0 LTR MaLR 186 272 -93 4 1140 289 329 154 0 chr12 72785570 72785713 -48471817 - RMER30 DNA MER1_type -4 198 34 4 1140 616 295 21 41 chr12 72786456 72786476 -48471054 + RSINE1 SINE B4 5 22 -143 4 1140 997 156 173 25 chr12 72786476 72786673 -48470857 + URR1A DNA MER1_type 1 226 0 4 1140 616 295 21 41 chr12 72786673 72786797 -48470733 + RSINE1 SINE B4 23 146 -19 4 1140 260 320 43 78 chr12 72787075 72787393 -48470137 - L1MEg1 LINE L1 -5466 769 678 4 1140 1620 48 27 0 chr12 72787511 72787698 -48469832 + B2_Mm1a SINE B2 2 193 0 4 1140 288 0 0 0 chr12 72787737 72787769 -48469761 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 4 1140 306 0 0 0 chr12 72790241 72790275 -48467255 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 1140 771 104 0 0 chr12 72790275 72790389 -48467141 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 1140 712 307 41 11 chr12 72790627 72790973 -48466557 - L1M2 LINE L1 -517 5657 5297 4 1140 1146 260 101 35 chr12 72790967 72791362 -48466168 - Lx6 LINE L1 -31 7429 7009 4 1140 847 270 28 51 chr12 72791367 72791582 -48465948 - B3 SINE B2 0 216 7 4 1140 1793 281 95 31 chr12 72791696 72792591 -48464939 - L1M2 LINE L1 -840 5303 4352 4 1140 23 0 0 0 chr12 72793214 72793237 -48464293 + AT_rich Low_complexity Low_complexity 1 23 0 4 1140 271 280 13 0 chr12 72794141 72794216 -48463314 - ERVL-E-int LTR ERVL -1194 4473 4398 4 1140 595 296 83 20 chr12 72794752 72795174 -48462356 - MER89 LTR ERV1 -6 553 5 4 1140 228 67 0 0 chr12 72795392 72795422 -48462108 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1140 471 118 0 0 chr12 72795488 72795564 -48461966 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1140 351 278 72 0 chr12 72795587 72795684 -48461846 + BC1_Mm scRNA scRNA 1 104 -48 4 1140 769 254 102 32 chr12 72795699 72795981 -48461549 - Lx7 LINE L1 -369 5931 5597 4 1140 280 319 55 69 chr12 72796142 72796287 -48461243 + MER20 DNA MER1_type 29 171 -48 4 1140 546 346 166 25 chr12 72796596 72796910 -48460620 + MLT1A0 LTR MaLR 6 363 -2 4 1140 1369 201 14 31 chr12 72797014 72797301 -48460229 + RLTR18B LTR ERVK 15 296 -216 5 1140 252 182 0 0 chr12 72797344 72797388 -48460142 + RLTR18B LTR ERVK 300 343 -169 5 1140 1436 140 13 9 chr12 72799510 72799734 -48457796 + URR1B DNA MER1_type 1 225 0 5 1140 361 206 73 0 chr12 72800002 72800068 -48457462 - MT2A LTR ERVL -402 131 61 5 1140 2023 157 18 64 chr12 72800068 72800457 -48457073 + ORR1C1 LTR MaLR 1 371 -7 5 1140 327 181 143 12 chr12 72800466 72800550 -48456980 - MTE2a LTR MaLR -282 97 3 5 1140 689 232 51 72 chr12 72801123 72801318 -48456212 - B3A SINE B2 -4 194 4 5 1140 496 31 16 0 chr12 72802158 72802222 -48455308 + L1_Mus1 LINE L1 6502 6566 -1 5 1140 921 242 64 4 chr12 72802402 72802638 -48454892 + ORR1D1 LTR MaLR 1 250 -124 5 1140 220 211 0 19 chr12 72803322 72803375 -48454155 + (CAG)n Simple_repeat Simple_repeat 2 53 0 5 1140 318 365 60 20 chr12 72803886 72804037 -48453493 + RSINE1 SINE B4 2 158 -7 5 1140 208 259 37 0 chr12 72804042 72804096 -48453434 + (CACG)n Simple_repeat Simple_repeat 4 59 0 5 1140 345 47 0 0 chr12 72804096 72804139 -48453391 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1140 272 347 62 34 chr12 72804156 72804335 -48453195 + MER96B DNA hAT 227 410 -7 5 1140 204 359 76 21 chr12 72804481 72804626 -48452904 + MIR SINE MIR 8 160 -102 5 1140 929 69 6 36 chr12 72804990 72805156 -48452374 + (TTCC)n Simple_repeat Simple_repeat 4 164 0 5 1140 881 285 42 4 chr12 72805183 72805447 -48452083 - B4 SINE B4 -16 276 3 5 1140 251 71 24 0 chr12 72806238 72806280 -48451250 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 5 1140 1197 82 0 0 chr12 72806280 72806426 -48451104 - B1_Mm SINE Alu 0 147 2 5 1140 240 250 37 12 chr12 72806700 72806781 -48450749 + L1MC LINE L1 4403 4485 -1661 5 1140 273 211 94 16 chr12 72806830 72806932 -48450598 + PB1D10 SINE Alu 2 117 -3 5 1140 222 278 0 132 chr12 72806930 72807013 -48450517 + ID4 SINE ID 2 73 -10 5 1140 699 268 64 29 chr12 72807149 72807353 -48450177 - Tigger5 DNA MER2_type -2175 231 21 5 1140 696 260 134 60 chr12 72807362 72807711 -48449819 + L1MC LINE L1 4576 4946 -1200 5 1140 189 0 0 0 chr12 72807711 72807732 -48449798 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1140 696 260 134 60 chr12 72807732 72807815 -48449715 + L1MC LINE L1 4947 5040 -1106 5 1140 251 311 37 55 chr12 72807873 72807982 -48449548 + U6 snRNA snRNA 1 107 0 5 1140 265 248 32 65 chr12 72808012 72808149 -48449381 + L1MC LINE L1 5099 5235 -911 5 1140 185 171 0 0 chr12 72808377 72808412 -48449118 + MIRm SINE MIR 240 274 -2 5 1140 411 211 0 0 chr12 72809454 72809544 -48447986 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1140 270 0 0 0 chr12 72809544 72809574 -48447956 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1140 2238 158 84 10 chr12 72809824 72810215 -48447315 + MTC LTR MaLR 2 421 0 5 1140 708 335 48 17 chr12 72810451 72810682 -48446848 - B4A SINE B4 -12 280 43 5 1140 1138 180 92 0 chr12 72810908 72811114 -48446416 - URR1B DNA MER1_type 0 225 1 5 1140 1446 256 52 15 chr12 72811612 72812016 -48445514 + MTD LTR MaLR 1 419 0 5 1140 669 230 79 65 chr12 72812269 72812417 -48445113 - MTEb LTR MaLR -162 217 78 5 1140 336 24 0 0 chr12 72812417 72812458 -48445072 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1140 669 230 79 65 chr12 72812458 72812523 -48445007 - MTEb LTR MaLR -302 77 1 5 1140 234 128 0 0 chr12 72812739 72812778 -48444752 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1140 414 57 0 0 chr12 72812855 72812908 -48444622 + (TTA)n Simple_repeat Simple_repeat 2 54 0 5 1140 207 271 0 0 chr12 72813411 72813470 -48444060 + (TTG)n Simple_repeat Simple_repeat 3 61 0 5 1140 700 314 49 8 chr12 72814017 72814261 -48443269 + MER76 LTR ERVL 3 256 -435 5 1140 907 284 134 9 chr12 72814285 72814739 -48442791 + L1M2 LINE L1 2276 2786 -3357 5 1140 357 243 0 0 chr12 72815123 72815197 -48442333 + ID_B1 SINE B4 135 208 -16 5 1140 249 33 0 0 chr12 72815205 72815235 -48442295 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 5 1140 1193 82 0 27 chr12 72815238 72815461 -48442069 + (GGAA)n Simple_repeat Simple_repeat 1 217 0 5 1140 238 282 35 93 chr12 72815461 72815547 -48441983 + AluG_3 SINE Alu 137 217 -94 5 1140 991 126 68 42 chr12 72816232 72816423 -48441107 - RLTR25A LTR ERVK 0 1103 908 5 1140 334 250 42 0 chr12 72816426 72816498 -48441032 - HAL1-3A_ME LINE L1 -809 2049 1975 5 1140 384 143 36 0 chr12 72816498 72816582 -48440948 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1140 3844 168 113 10 chr12 72816782 72817584 -48439946 - RLTR25A LTR ERVK -149 954 70 5 1140 666 282 19 25 chr12 72818136 72818296 -48439234 + RSINE1 SINE B4 3 161 -4 5 1140 236 250 0 18 chr12 72818649 72818706 -48438824 + GA-rich Low_complexity Low_complexity 4 59 0 5 1140 21 36 0 0 chr12 72819253 72819281 -48438249 + AT_rich Low_complexity Low_complexity 1 28 0 5 1140 1715 137 27 66 chr12 72819509 72819844 -48437686 + RLTRETN_Mm LTR ERVK 1 322 0 5 1140 236 289 161 96 chr12 72819918 72820167 -48437363 + ORR1E LTR MaLR 38 302 -57 5 1140 647 36 0 0 chr12 72821150 72821233 -48436297 - B1_Mus2 SINE Alu 0 147 65 5 1140 348 171 0 137 chr12 72821233 72821244 -48436286 - ID_B1 SINE B4 0 193 137 5 1140 228 260 0 0 chr12 72821452 72821502 -48436028 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 5 1140 6906 56 23 3 chr12 72821503 72822418 -48435112 - MusHAL1 LINE L1 -553 2159 1227 5 1140 352 197 0 15 chr12 72822418 72822485 -48435045 - MTB LTR MaLR -57 343 278 5 1140 3513 138 62 18 chr12 72822485 72823098 -48434432 + MERVK26-int LTR ERVK 5483 6122 -797 5 1140 182 254 50 17 chr12 72823101 72823161 -48434369 + L2 LINE L2 2865 2926 -493 5 1140 251 333 76 21 chr12 72823248 72823392 -48434138 - LTR84a LTR ERVL -563 194 43 5 1140 659 276 158 48 chr12 72824821 72825242 -48432288 - RMER5 LTR ERV1 -67 467 1 5 1140 273 296 157 0 chr12 72825514 72825622 -48431908 - RMER5 LTR ERV1 -192 342 218 5 1140 1125 202 38 38 chr12 72825638 72825875 -48431655 + 7SK RNA RNA 1 237 -94 5 1140 253 286 109 81 chr12 72827472 72827693 -48429837 - MLT1J LTR MaLR -42 470 244 5 1140 977 214 14 50 chr12 72827735 72827956 -48429574 + B3 SINE B2 1 213 -3 5 1140 547 201 283 25 chr12 72827960 72828246 -48429284 + Lx9 LINE L1 7285 7644 0 5 1140 1080 252 71 23 chr12 72828400 72828708 -48428822 + Lx6 LINE L1 7133 7455 -5 5 1140 238 326 109 30 chr12 72828839 72828940 -48428590 - MLT1J-int LTR MaLR -83 1304 1196 5 1140 1833 285 97 8 chr12 72829136 72829248 -48428282 - Lx8 LINE L1 -5 7468 7324 5 1140 360 0 0 0 chr12 72829248 72829288 -48428242 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1140 1833 285 97 8 chr12 72829288 72829773 -48427757 - Lx8 LINE L1 -150 7323 6819 5 1140 878 219 27 111 chr12 72829778 72829971 -48427559 - L1_Mur3 LINE L1 -1960 3920 3729 5 1140 424 280 35 60 chr12 72829971 72830172 -48427358 - B3A SINE B2 0 198 3 5 1140 878 219 27 111 chr12 72830172 72830240 -48427290 - L1_Mur3 LINE L1 -2152 3728 3681 5 1140 1887 252 45 22 chr12 72830270 72830684 -48426846 - L1_Mur3 LINE L1 -2452 3428 3013 5 1140 411 21 0 0 chr12 72830684 72830732 -48426798 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1140 1887 252 45 22 chr12 72830732 72830939 -48426591 - L1_Mur3 LINE L1 -2868 3012 2793 5 1140 1644 68 9 18 chr12 72831137 72831363 -48426167 - MusHAL1 LINE L1 -142 2570 2347 5 1140 10850 71 13 18 chr12 72832149 72832206 -48425324 - MusHAL1 LINE L1 -361 2351 2292 5 1140 264 30 0 0 chr12 72832206 72832239 -48425291 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1140 309 51 0 0 chr12 72832248 72832287 -48425243 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 5 1140 10850 71 13 18 chr12 72832287 72833791 -48423739 - MusHAL1 LINE L1 -431 2281 790 5 1140 785 194 0 6 chr12 72834357 72834538 -48422992 + CT-rich Low_complexity Low_complexity 1 180 0 5 1140 245 287 26 53 chr12 72834555 72834669 -48422861 + L1M5 LINE L1 5587 5697 -427 5 1140 366 275 110 0 chr12 72834841 72834932 -48422598 + PB1D10 SINE Alu 1 101 -16 5 1140 599 342 177 33 chr12 72835328 72835960 -48421570 - MER21B LTR ERV1 -74 789 67 5 1140 1957 155 64 15 chr12 72836240 72836633 -48420897 + MTC LTR MaLR 1 412 -9 5 1140 393 153 0 0 chr12 72836764 72836836 -48420694 + GA-rich Low_complexity Low_complexity 2 73 0 5 1140 1315 68 68 0 chr12 72836857 72837033 -48420497 + B2_Mm2 SINE B2 4 191 -4 5 1140 272 350 22 6 chr12 72837999 72838177 -48419353 - RNERVK23-int LTR ERVK -7751 466 286 5 1140 2595 127 66 5 chr12 72838579 72838989 -48418541 - RLTR10C LTR ERVK -1 435 1 5 1140 540 0 0 0 chr12 72839285 72839345 -48418185 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1140 2078 199 69 52 chr12 72840200 72840929 -48416601 + L1_Mur3 LINE L1 984 1759 -4121 5 1140 453 339 52 56 chr12 72841024 72841176 -48416354 - LTR86B1 LTR ERVL -224 269 116 5 1140 3449 33 0 2 chr12 72841176 72841573 -48415957 + MTA_Mm LTR MaLR 1 396 0 5 1140 453 339 52 56 chr12 72841573 72841689 -48415841 - LTR86B1 LTR ERVL -378 115 2 5 1140 388 336 43 14 chr12 72843746 72843885 -48413645 + RSINE1 SINE B4 1 143 -22 5 1140 432 0 0 0 chr12 72843904 72843952 -48413578 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1140 254 203 29 86 chr12 72843982 72844052 -48413478 + ID4 SINE ID 4 69 -14 5 1140 2977 144 13 53 chr12 72845090 72845633 -48411897 + RLTR28 LTR ERVL 4 524 0 5 1140 549 276 8 0 chr12 72846211 72846345 -48411185 - ID_B1 SINE B4 -4 220 86 5 1140 501 17 0 0 chr12 72846979 72847037 -48410493 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1140 504 0 0 0 chr12 72848081 72848137 -48409393 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1140 556 14 14 14 chr12 72849606 72849680 -48407850 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 1140 532 207 126 51 chr12 72850367 72850622 -48406908 + B4 SINE B4 4 277 -15 5 1140 447 230 219 18 chr12 72851130 72851294 -48406236 + B3A SINE B2 1 197 -1 5 1140 432 130 0 0 chr12 72851294 72851363 -48406167 + (GGA)n Simple_repeat Simple_repeat 2 70 0 5 1140 24 32 0 0 chr12 72851418 72851449 -48406081 + AT_rich Low_complexity Low_complexity 1 31 0 5 1140 24 0 0 0 chr12 72851634 72851658 -48405872 + AT_rich Low_complexity Low_complexity 1 24 0 5 1140 263 154 12 49 chr12 72851759 72851841 -48405689 + CT-rich Low_complexity Low_complexity 4 82 0 5 1140 352 205 121 0 chr12 72852469 72852552 -48404978 - B4 SINE B4 -43 249 157 6 1140 814 266 5 16 chr12 72852583 72852774 -48404756 - B4 SINE B4 -103 189 1 6 1140 414 0 0 0 chr12 72854194 72854240 -48403290 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1140 306 0 0 0 chr12 72854240 72854274 -48403256 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1140 260 254 0 0 chr12 72854275 72854346 -48403184 + CT-rich Low_complexity Low_complexity 2 72 0 6 1140 452 315 70 49 chr12 72854401 72854645 -48402885 + MLT1C LTR MaLR 200 448 -19 6 1140 299 179 39 0 chr12 72854889 72854967 -48402563 - MTD LTR MaLR 0 419 339 6 1140 337 246 0 0 chr12 72855439 72855508 -48402022 - RSINE1 SINE B4 -86 79 11 6 1140 1525 205 67 18 chr12 72855545 72855888 -48401642 - MTD LTR MaLR -59 360 1 6 1140 674 311 46 22 chr12 72856009 72856377 -48401153 + L1MD2 LINE L1 5583 5959 -400 6 1140 784 300 117 44 chr12 72856357 72856530 -48401000 + L1M3 LINE L1 4427 4624 -1522 6 1140 526 93 23 0 chr12 72856530 72856616 -48400914 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1140 269 310 0 0 chr12 72856616 72856687 -48400843 - ID4 SINE ID -11 72 2 6 1140 4023 72 25 0 chr12 72856690 72857216 -48400314 - L1_Mus3 LINE L1 0 6638 6100 6 1140 784 289 108 43 chr12 72857216 72857506 -48400024 + L1M3 LINE L1 4621 4934 -1212 6 1140 295 346 37 22 chr12 72857520 72857656 -48399874 + B4A SINE B4 5 142 -150 6 1140 1758 160 7 3 chr12 72857619 72857920 -48399610 - MTC LTR MaLR -119 302 1 6 1140 854 181 200 17 chr12 72858457 72858637 -48398893 - B3 SINE B2 -2 214 2 6 1140 1882 193 44 0 chr12 72859060 72859444 -48398086 - MTD LTR MaLR -14 405 5 6 1140 21 0 0 0 chr12 72860421 72860442 -48397088 + AT_rich Low_complexity Low_complexity 1 21 0 6 1140 491 269 75 17 chr12 72861397 72861571 -48395959 - LTR40b LTR ERVL -2 517 334 6 1140 573 319 14 23 chr12 72861587 72861808 -48395722 - LTR40b LTR ERVL -238 224 6 6 1140 958 209 8 50 chr12 72861904 72862144 -48395386 + RLTR20D LTR ERVK 1 259 -309 6 1140 439 245 132 80 chr12 72862138 72862190 -48395340 + RLTR20D LTR ERVK 410 458 -110 6 1140 426 20 0 0 chr12 72862190 72862241 -48395289 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1140 439 245 132 80 chr12 72862241 72862339 -48395191 + RLTR20D LTR ERVK 459 567 -1 6 1140 256 323 32 0 chr12 72862417 72862510 -48395020 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 6 1140 1798 126 68 35 chr12 72862747 72863110 -48394420 + ORR1B2 LTR MaLR 1 326 -41 6 1140 1424 98 10 0 chr12 72863110 72863303 -48394227 + B2_Mm2 SINE B2 1 195 0 6 1140 630 140 0 0 chr12 72863303 72863317 -48394213 + (GGA)n Simple_repeat Simple_repeat 2 15 0 6 1140 1308 79 0 0 chr12 72863317 72863495 -48394035 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 6 1140 630 140 0 0 chr12 72863495 72863587 -48393943 + (GGA)n Simple_repeat Simple_repeat 1 92 0 6 1140 1305 83 0 0 chr12 72863593 72863773 -48393757 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1140 303 109 0 0 chr12 72863773 72863819 -48393711 + ORR1B2 LTR MaLR 341 386 -8 6 1140 1155 258 46 20 chr12 72863824 72864128 -48393402 + ORR1D2 LTR MaLR 56 367 -3 6 1140 534 246 0 0 chr12 72864497 72864607 -48392923 - PB1D7 SINE Alu 0 120 11 6 1140 256 294 72 14 chr12 72865904 72866042 -48391488 + RSINE1 SINE B4 4 149 -16 6 1140 461 136 26 26 chr12 72866049 72866162 -48391368 + C-rich Low_complexity Low_complexity 2 114 0 6 1140 206 160 20 0 chr12 72866854 72866904 -48390626 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1140 1108 115 0 0 chr12 72866914 72867079 -48390451 + B2_Mm2 SINE B2 2 166 -29 6 1140 507 288 0 0 chr12 72867088 72867206 -48390324 - RSINE1 SINE B4 -45 120 3 6 1140 1483 73 5 0 chr12 72867509 72867700 -48389830 - B2_Mm1t SINE B2 0 193 2 6 1140 383 222 98 29 chr12 72868407 72868601 -48388929 - RMER4B LTR ERVK -8 577 343 6 1140 333 0 0 0 chr12 72868736 72868773 -48388757 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1140 473 145 94 79 chr12 72868784 72868911 -48388619 - RMER4B LTR ERVK -456 129 1 6 1140 219 312 64 13 chr12 72869165 72869243 -48388287 + ID4 SINE ID 2 83 0 6 1140 254 266 42 84 chr12 72869198 72869317 -48388213 + B1F2 SINE Alu 7 120 -29 6 1140 399 184 0 0 chr12 72869246 72869322 -48388208 + ID_B1 SINE B4 128 203 -21 6 1140 211 93 0 65 chr12 72870219 72870265 -48387265 + G-rich Low_complexity Low_complexity 2 44 0 6 1140 279 0 0 0 chr12 72870640 72870671 -48386859 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1140 279 229 29 0 chr12 72871924 72871994 -48385536 + ID4 SINE ID 2 73 -10 6 1140 192 217 0 0 chr12 72871994 72872040 -48385490 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1140 336 159 29 0 chr12 72872072 72872141 -48385389 - B1_Mus2 SINE Alu 0 147 77 6 1140 424 214 95 19 chr12 72872134 72872239 -48385291 + ID_B1 SINE B4 112 224 0 6 1140 281 250 252 23 chr12 72872225 72872356 -48385174 + MER58B DNA MER1_type 108 268 -73 6 1140 324 0 0 0 chr12 72872477 72872513 -48385017 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1140 525 263 46 102 chr12 72873714 72874019 -48383511 + B4A SINE B4 2 289 -3 6 1140 759 120 0 0 chr12 72874467 72874584 -48382946 + (GAA)n Simple_repeat Simple_repeat 2 118 0 6 1140 1143 119 0 0 chr12 72874584 72874760 -48382770 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 6 1141 392 254 138 48 chr12 72876505 72876650 -48380880 + MER20 DNA MER1_type 62 219 0 6 1141 364 278 20 10 chr12 72876718 72876816 -48380714 + PB1D10 SINE Alu 7 105 -12 6 1141 180 0 0 0 chr12 72876816 72876836 -48380694 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 6 1141 449 190 0 0 chr12 72877099 72877178 -48380352 + B4A SINE B4 1 79 -213 6 1141 6958 53 2 2 chr12 72877204 72878126 -48379404 + L1Md_F2 LINE L1 5016 5935 -647 6 1141 3484 59 0 7 chr12 72878126 72878571 -48378959 + L1Md_F2 LINE L1 6141 6582 0 6 1141 611 198 0 0 chr12 72878591 72878702 -48378828 + B4A SINE B4 182 292 0 6 1141 746 122 7 0 chr12 72880233 72880381 -48377149 + (TC)n Simple_repeat Simple_repeat 2 150 0 6 1141 297 0 0 0 chr12 72880381 72880414 -48377116 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1141 675 227 58 19 chr12 72881909 72882116 -48375414 + B3 SINE B2 1 215 -1 6 1141 239 260 26 40 chr12 72882141 72882217 -48375313 + GA-rich Low_complexity Low_complexity 4 78 0 6 1141 246 194 0 118 chr12 72882533 72882609 -48374921 - RMER30 DNA MER1_type -114 88 22 6 1141 1076 59 29 0 chr12 72883088 72883224 -48374306 + B1_Mm SINE Alu 3 142 -5 6 1141 1310 67 6 0 chr12 72883245 72883423 -48374107 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 6 1141 559 284 52 9 chr12 72883762 72883975 -48373555 + ID_B1 SINE B4 3 224 0 6 1141 1125 58 0 0 chr12 72884826 72884963 -48372567 + B1_Mus1 SINE Alu 2 138 -10 6 1141 215 132 57 0 chr12 72884963 72885016 -48372514 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1141 234 0 0 0 chr12 72885459 72885485 -48372045 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1141 386 309 0 0 chr12 72886603 72886713 -48370817 + PB1D10 SINE Alu 1 110 -7 6 1141 312 295 26 0 chr12 72887011 72887089 -48370441 - ID4_ SINE ID -3 80 1 6 1141 307 270 90 53 chr12 72887186 72887319 -48370211 - MTE2a LTR MaLR -201 178 41 6 1141 2969 108 4 28 chr12 72887328 72887793 -48369737 - RLTR33 LTR ERVK 0 678 225 6 1141 2427 196 41 7 chr12 72887870 72888333 -48369197 - Lx5 LINE L1 -3 7047 6569 6 1141 1201 343 31 27 chr12 72889534 72889980 -48367550 + MLT2B3 LTR ERVL 1 448 -106 6 1141 396 59 0 0 chr12 72890605 72890656 -48366874 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1141 242 354 163 24 chr12 72890817 72891069 -48366461 - MLT1C LTR MaLR -171 296 10 6 1141 301 277 21 21 chr12 72892119 72892215 -48365315 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 6 1141 263 260 10 0 chr12 72892226 72892322 -48365208 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 6 1141 573 42 0 0 chr12 72893085 72893157 -48364373 + (GGA)n Simple_repeat Simple_repeat 3 74 0 6 1141 456 240 0 101 chr12 72893828 72893967 -48363563 + ID_B1 SINE B4 80 204 -20 6 1141 407 256 16 33 chr12 72894088 72894209 -48363321 - MLT1A1 LTR MaLR -16 392 274 6 1141 622 254 152 42 chr12 72894786 72895049 -48362481 + B4A SINE B4 1 292 0 6 1141 258 206 0 0 chr12 72895049 72895117 -48362413 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1141 4969 111 14 45 chr12 72895267 72896136 -48361394 - RMER21B LTR ERV1 0 842 1 6 1141 943 172 108 51 chr12 72896568 72896782 -48360748 - URR1A DNA MER1_type 0 226 1 6 1141 267 152 0 0 chr12 72897381 72897427 -48360103 + T-rich Low_complexity Low_complexity 1 46 0 6 1141 352 307 50 38 chr12 72897436 72897595 -48359935 + MIRb SINE MIR 16 176 -92 6 1141 288 0 0 0 chr12 72898023 72898055 -48359475 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1141 1196 206 51 58 chr12 72898475 72898768 -48358762 + B4A SINE B4 2 292 0 6 1141 571 135 17 45 chr12 72898768 72898946 -48358584 + (CA)n Simple_repeat Simple_repeat 1 173 0 6 1141 412 176 19 46 chr12 72898962 72899225 -48358305 + (CA)n Simple_repeat Simple_repeat 1 255 0 6 1141 491 169 25 33 chr12 72899236 72899486 -48358044 + (CA)n Simple_repeat Simple_repeat 1 247 0 6 1141 268 125 15 15 chr12 72899500 72899565 -48357965 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1141 456 284 9 0 chr12 72899646 72899762 -48357768 + PB1D10 SINE Alu 1 117 0 6 1141 1689 21 0 0 chr12 72899781 72899968 -48357562 - B2_Mm1a SINE B2 -6 187 1 6 1141 1361 71 60 5 chr12 72900012 72900196 -48357334 + B2_Mm2 SINE B2 2 195 0 6 1141 257 223 16 149 chr12 72900383 72900504 -48357026 + PB1D10 SINE Alu 5 109 -8 6 1141 218 0 0 86 chr12 72901675 72901710 -48355820 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 6 1141 21 0 0 0 chr12 72903395 72903416 -48354114 + AT_rich Low_complexity Low_complexity 1 21 0 6 1141 441 164 161 18 chr12 72903586 72903698 -48353832 + B1_Mur1 SINE Alu 22 149 0 6 1141 225 267 0 0 chr12 72904012 72904057 -48353473 + MIRc SINE MIR 87 131 -137 6 1141 743 114 11 28 chr12 72904882 72905062 -48352468 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1141 220 133 33 0 chr12 72905075 72905135 -48352395 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1141 999 88 14 0 chr12 72905198 72905346 -48352184 - B2_Mm1t SINE B2 -7 186 37 6 1141 426 253 44 33 chr12 72905705 72905885 -48351645 - LTR37A LTR ERV1 0 426 245 7 1141 1021 82 22 0 chr12 72905973 72906107 -48351423 + B1_Mur4 SINE Alu 1 137 -13 7 1141 211 146 24 0 chr12 72906109 72906150 -48351380 + GA-rich Low_complexity Low_complexity 1 42 0 7 1141 355 272 29 10 chr12 72906278 72906382 -48351148 - Lx8 LINE L1 -326 7147 7042 7 1141 374 280 35 14 chr12 72906539 72906684 -48350846 - MLT2B4 LTR ERVL -397 159 12 7 1141 563 175 67 4 chr12 72907332 72907454 -48350076 + B1_Mur2 SINE Alu 17 149 0 7 1141 225 186 64 103 chr12 72907662 72907740 -48349790 - MTE2b LTR MaLR -266 113 39 7 1141 296 333 89 0 chr12 72907970 72908105 -48349425 + MLT1A1 LTR MaLR 254 400 -8 7 1141 1643 264 64 28 chr12 72908110 72908988 -48348542 + L1MD2 LINE L1 5070 6033 -145 7 1141 309 319 104 33 chr12 72909304 72909515 -48348015 - LTR33 LTR ERVL -5 510 285 7 1141 413 308 65 6 chr12 72909862 72910032 -48347498 + MER5A DNA MER1_type 1 180 -9 7 1141 352 189 19 120 chr12 72910718 72910826 -48346704 + B3A SINE B2 102 198 0 7 1141 1103 218 24 5 chr12 72911482 72911694 -48345836 + B3 SINE B2 1 216 0 7 1141 31 0 0 0 chr12 72911719 72911750 -48345780 + AT_rich Low_complexity Low_complexity 1 31 0 7 1141 779 154 53 79 chr12 72911754 72911907 -48345623 + B2_Mm2 SINE B2 1 160 -35 7 1141 324 70 0 0 chr12 72911907 72911950 -48345580 + (TAAG)n Simple_repeat Simple_repeat 1 43 0 7 1141 779 154 53 79 chr12 72911950 72911986 -48345544 + B2_Mm2 SINE B2 161 185 -10 7 1141 723 312 57 54 chr12 72912450 72912822 -48344708 - MTD LTR MaLR -12 407 35 7 1141 293 288 0 14 chr12 72912847 72912921 -48344609 + RSINE1 SINE B4 20 92 -73 7 1141 423 0 0 0 chr12 72913039 72913086 -48344444 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1141 549 0 0 0 chr12 72913242 72913303 -48344227 + (GAA)n Simple_repeat Simple_repeat 1 61 0 7 1141 659 203 21 14 chr12 72913705 72913845 -48343685 + B1_Mur1 SINE Alu 4 144 -5 7 1141 625 160 8 8 chr12 72913912 72914038 -48343492 + GA-rich Low_complexity Low_complexity 2 127 0 7 1141 266 250 86 12 chr12 72914057 72914138 -48343392 + PB1D10 SINE Alu 5 91 -26 7 1141 981 150 207 11 chr12 72914147 72914184 -48343346 - MTD LTR MaLR 0 419 380 7 1141 468 0 0 0 chr12 72914184 72914236 -48343294 + (CAAAC)n Simple_repeat Simple_repeat 3 54 0 7 1141 981 150 207 11 chr12 72914236 72914468 -48343062 - MTD LTR MaLR -40 379 97 7 1141 32 0 0 0 chr12 72914585 72914617 -48342913 + AT_rich Low_complexity Low_complexity 1 32 0 7 1141 299 250 165 4 chr12 72915348 72915563 -48341967 + MER33 DNA MER1_type 24 271 -53 7 1141 768 274 38 19 chr12 72915680 72915892 -48341638 - B3 SINE B2 0 216 1 7 1141 202 73 49 0 chr12 72915904 72915945 -48341585 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1141 1464 46 6 0 chr12 72916073 72916246 -48341284 + B2_Mm1t SINE B2 2 175 -18 7 1141 471 275 7 74 chr12 72916284 72916433 -48341097 - RSINE1 SINE B4 -25 140 2 7 1141 917 249 9 31 chr12 72917344 72917531 -48339999 - ID_B1 SINE B4 0 224 42 7 1141 2560 128 13 13 chr12 72917531 72917925 -48339605 - ORR1B1 LTR MaLR 0 394 1 7 1141 917 249 9 31 chr12 72917925 72917965 -48339565 - ID SINE ID -183 41 2 7 1141 337 298 0 37 chr12 72918618 72918726 -48338804 + PB1D10 SINE Alu 1 104 -13 7 1141 216 0 0 0 chr12 72918726 72918750 -48338780 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1141 779 129 8 0 chr12 72918755 72918887 -48338643 + (GAA)n Simple_repeat Simple_repeat 1 133 0 7 1141 808 218 33 11 chr12 72919033 72919214 -48338316 + B3 SINE B2 15 199 -17 7 1141 341 248 30 127 chr12 72919260 72919426 -48338104 + RSINE1 SINE B4 16 165 0 7 1141 243 293 0 13 chr12 72919427 72919503 -48338027 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1141 2468 80 3 47 chr12 72920169 72920511 -48337019 + ORR1A2 LTR MaLR 1 327 0 7 1141 346 283 272 9 chr12 72921368 72921596 -48335934 - MER63B DNA AcHobo -16 420 133 7 1141 205 244 0 0 chr12 72921623 72921668 -48335862 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1141 686 304 34 82 chr12 72921671 72921744 -48335786 - B4 SINE B4 -2 290 219 7 1141 261 0 0 0 chr12 72921744 72921773 -48335757 + (TTC)n Simple_repeat Simple_repeat 2 30 0 7 1141 686 304 34 82 chr12 72921773 72921966 -48335564 - B4 SINE B4 -74 218 37 7 1141 992 226 179 26 chr12 72921966 72922307 -48335223 + MTD LTR MaLR 1 393 -26 7 1141 312 91 0 0 chr12 72922354 72922398 -48335132 + (CCA)n Simple_repeat Simple_repeat 1 44 0 7 1141 335 259 20 0 chr12 72922479 72922575 -48334955 - PB1D10 SINE Alu -9 108 9 7 1141 241 277 19 87 chr12 72922598 72922701 -48334829 - MER63B DNA AcHobo -335 101 6 7 1141 279 0 0 0 chr12 72924182 72924213 -48333317 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 1141 723 179 30 0 chr12 72924688 72924822 -48332708 + ID_B1 SINE B4 87 224 0 7 1141 378 0 0 0 chr12 72925560 72925602 -48331928 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1141 714 189 55 39 chr12 72925783 72925965 -48331565 - B3 SINE B2 0 216 32 7 1141 359 318 185 38 chr12 72927048 72927388 -48330142 - LTR33A_ LTR ERVL -46 485 96 7 1141 536 151 177 7 chr12 72927684 72927831 -48329699 - Lx7 LINE L1 0 7696 7525 7 1141 4961 210 54 3 chr12 72927867 72928878 -48328652 - Lx7 LINE L1 -280 7416 6354 7 1141 217 214 0 0 chr12 72929118 72929160 -48328370 - MIRc SINE MIR -124 144 103 7 1141 207 0 0 0 chr12 72929663 72929686 -48327844 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1141 270 0 0 0 chr12 72929904 72929934 -48327596 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1141 264 30 0 0 chr12 72930581 72930614 -48326916 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 7 1141 205 152 0 0 chr12 72933067 72933100 -48324430 + (CCCGG)n Simple_repeat Simple_repeat 5 37 0 7 1141 22 70 0 0 chr12 72934922 72934965 -48322565 + AT_rich Low_complexity Low_complexity 1 43 0 7 1141 533 273 65 3 chr12 72936381 72936537 -48320993 - ID_B1 SINE B4 -56 236 70 7 1141 22 0 0 0 chr12 72936617 72936639 -48320891 + AT_rich Low_complexity Low_complexity 1 22 0 7 1141 224 250 11 35 chr12 72938261 72938348 -48319182 + RSINE1 SINE B4 12 96 -69 7 1141 738 222 28 0 chr12 72938723 72938903 -48318627 - B3 SINE B2 -30 186 2 7 1141 230 192 0 19 chr12 72939063 72939116 -48318414 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 7 1141 359 275 100 7 chr12 72940205 72940355 -48317175 - ID_B1 SINE B4 -20 204 41 7 1141 210 37 0 0 chr12 72940574 72940601 -48316929 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1141 900 234 187 43 chr12 72940602 72940950 -48316580 - MTD LTR MaLR -4 415 18 7 1141 475 242 79 24 chr12 72941010 72941137 -48316393 - RSINE1 SINE B4 -29 136 3 7 1141 331 308 67 67 chr12 72941218 72941427 -48316103 - MER20 DNA MER1_type -4 215 7 7 1141 326 246 173 0 chr12 72942148 72942258 -48315272 + B4A SINE B4 8 136 -156 7 1141 411 92 0 0 chr12 72942328 72942393 -48315137 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1141 198 0 0 0 chr12 72942745 72942767 -48314763 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 7 1141 568 208 88 69 chr12 72943352 72943512 -48314018 - RSINE1 SINE B4 0 165 3 7 1141 375 60 0 0 chr12 72943932 72943982 -48313548 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1141 393 226 151 0 chr12 72943983 72944089 -48313441 - RSINE1 SINE B4 -41 124 3 7 1141 590 116 0 0 chr12 72944886 72944981 -48312549 + RMER1B Other Other 958 1052 -14 7 1141 667 281 93 64 chr12 72945094 72945321 -48312209 - MLT1E LTR MaLR -89 564 345 7 1141 402 21 0 0 chr12 72945321 72945368 -48312162 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1141 667 297 67 72 chr12 72945368 72945555 -48311975 - MLT1E LTR MaLR -266 387 208 7 1141 884 263 115 4 chr12 72946071 72946315 -48311215 - B4A SINE B4 -11 281 11 7 1141 346 213 20 50 chr12 72946400 72946499 -48311031 - HAL1-3A_ME LINE L1 -788 2070 1975 7 1141 414 0 0 0 chr12 72946985 72947031 -48310499 + (CTG)n Simple_repeat Simple_repeat 1 46 0 7 1141 567 0 0 0 chr12 72947031 72947094 -48310436 + (TTC)n Simple_repeat Simple_repeat 2 64 0 7 1141 590 0 14 0 chr12 72948513 72948583 -48308947 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1141 478 364 0 28 chr12 72949064 72949245 -48308285 + Tigger5 DNA MER2_type 10 185 -2221 7 1141 245 338 55 48 chr12 72949350 72949496 -48308034 - Charlie1 DNA MER1_type -2575 206 60 7 1141 474 216 26 0 chr12 72950107 72950223 -48307307 - PB1D7 SINE Alu -1 119 1 7 1141 1157 68 0 0 chr12 72950592 72950738 -48306792 + B1_Mm SINE Alu 2 147 0 7 1141 373 237 26 0 chr12 72950754 72950830 -48306700 - ID4 SINE ID -3 80 3 7 1141 350 266 97 0 chr12 72950841 72950954 -48306576 - PB1 SINE Alu -2 125 2 7 1141 256 298 12 0 chr12 72951779 72951950 -48305580 + (CA)n Simple_repeat Simple_repeat 2 174 0 7 1141 209 271 28 14 chr12 72951954 72952025 -48305505 + (CATA)n Simple_repeat Simple_repeat 1 72 0 7 1141 364 277 11 0 chr12 72952033 72952210 -48305320 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1141 918 136 13 20 chr12 72953022 72953172 -48304358 + B1_Mur4 SINE Alu 2 150 0 7 1141 276 155 0 0 chr12 72953505 72953576 -48303954 + A-rich Low_complexity Low_complexity 1 71 0 7 1141 237 246 43 14 chr12 72954023 72954093 -48303437 - Charlie23a DNA MER1_type 0 339 268 7 1141 255 93 0 0 chr12 72954372 72954415 -48303115 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1141 516 100 0 0 chr12 72954532 72954612 -48302918 + (TCCA)n Simple_repeat Simple_repeat 4 83 0 7 1141 223 190 52 0 chr12 72954684 72954742 -48302788 + GA-rich Low_complexity Low_complexity 2 62 0 7 1141 27 29 0 0 chr12 72955067 72955101 -48302429 + AT_rich Low_complexity Low_complexity 1 34 0 7 1141 441 216 127 64 chr12 72955700 72955873 -48301657 - L1MB8 LINE L1 -187 5991 5808 7 1141 249 246 55 55 chr12 72955892 72955965 -48301565 - B1_Mur1 SINE Alu -1 148 76 8 1141 783 251 75 4 chr12 72955997 72956277 -48301253 - L1MB7 LINE L1 -352 5832 5533 8 1141 321 26 0 0 chr12 72957763 72957801 -48299729 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1141 357 24 0 0 chr12 72957801 72957842 -48299688 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1141 484 282 117 33 chr12 72958324 72958504 -48299026 - MER3 DNA MER1_type 0 209 15 8 1141 227 265 13 117 chr12 72958530 72958607 -48298923 - ORR1E LTR MaLR 0 379 311 8 1141 514 281 35 17 chr12 72958608 72958724 -48298806 + ID_B1 SINE B4 84 201 -23 8 1141 444 304 78 22 chr12 72958861 72959121 -48298409 - ORR1E LTR MaLR -102 268 1 8 1141 290 340 10 10 chr12 72959501 72959517 -48298013 - B1_Mm SINE Alu -20 127 27 8 1141 501 212 0 0 chr12 72959517 72959602 -48297928 - ID_B1 SINE B4 -32 192 108 8 1141 198 185 40 133 chr12 72960021 72960096 -48297434 + L4 LINE RTE 1785 1852 -177 8 1141 387 0 0 0 chr12 72960100 72960143 -48297387 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1141 378 238 308 0 chr12 72960671 72960814 -48296716 - MLT2B3 LTR ERVL -5 549 363 8 1141 994 274 59 0 chr12 72960890 72961211 -48296319 - ERVL-int LTR ERVL -2954 2803 2464 8 1141 643 288 31 36 chr12 72961387 72961610 -48295920 + MLT-int LTR MaLR 1470 1691 -44 8 1141 281 233 110 83 chr12 72961667 72961812 -48295718 + RMER15 LTR ERVL 13 161 -414 8 1141 243 219 11 58 chr12 72961827 72961914 -48295616 + RMER15 LTR ERVL 344 426 -149 8 1141 1134 66 0 0 chr12 72962955 72963091 -48294439 + B1_Mus1 SINE Alu 2 137 -11 8 1141 212 240 20 0 chr12 72963329 72963379 -48294151 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1141 183 224 0 140 chr12 72964799 72964856 -48292674 + L2 LINE L2 86 134 -3285 8 1141 685 235 66 10 chr12 72965727 72965925 -48291605 - MER57A-int LTR ERV1 -186 6001 5793 8 1141 1000 189 49 10 chr12 72966096 72966299 -48291231 + RCHARR1 DNA MER1_type 763 973 -1 8 1141 450 0 0 0 chr12 72967795 72967845 -48289685 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1141 208 325 93 32 chr12 72968158 72968318 -48289212 + MIR3 SINE MIR 14 189 -79 8 1141 1734 184 120 3 chr12 72968567 72968942 -48288588 + MTD LTR MaLR 1 419 0 8 1141 240 261 28 42 chr12 72969907 72969979 -48287551 - ID4 SINE ID -1 82 12 8 1141 288 308 99 0 chr12 72970356 72970447 -48287083 + L2a LINE L2 3326 3425 -1 8 1141 235 224 14 43 chr12 72970603 72970673 -48286857 - MER58A DNA MER1_type -134 90 23 8 1141 245 250 0 0 chr12 72971472 72971532 -48285998 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1141 254 73 0 24 chr12 72972000 72972042 -48285488 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 8 1141 374 289 124 0 chr12 72972899 72973020 -48284510 + RSINE1 SINE B4 2 137 -28 8 1141 393 272 571 0 chr12 72973149 72973290 -48284240 + ID_B1 SINE B4 1 222 -2 8 1141 1560 202 111 11 chr12 72974354 72974715 -48282815 + MTD LTR MaLR 1 397 -22 8 1141 287 338 56 49 chr12 72974925 72975068 -48282462 - MLT1K LTR MaLR -66 529 386 8 1141 256 219 0 27 chr12 72976693 72976756 -48280774 - MIRb SINE MIR -103 165 103 8 1141 444 67 0 0 chr12 72977784 72977844 -48279686 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 8 1141 582 28 0 0 chr12 72977964 72978036 -48279494 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1141 186 338 0 81 chr12 72979365 72979452 -48278078 - L3 LINE CR1 -2799 1690 1611 8 1141 971 307 83 34 chr12 72979755 72980375 -48277155 - L1M3 LINE L1 -1034 5106 4426 8 1141 1001 211 5 10 chr12 72980407 72980613 -48276917 + B3 SINE B2 1 205 -11 8 1141 23 0 0 0 chr12 72980996 72981019 -48276511 + AT_rich Low_complexity Low_complexity 1 23 0 8 1141 354 45 0 0 chr12 72981856 72981900 -48275630 + (TGG)n Simple_repeat Simple_repeat 1 44 0 8 1141 267 243 0 26 chr12 72981900 72981976 -48275554 + (TATG)n Simple_repeat Simple_repeat 1 74 0 8 1141 21 0 0 0 chr12 72983357 72983378 -48274152 + AT_rich Low_complexity Low_complexity 1 21 0 8 1141 258 290 57 48 chr12 72985001 72985106 -48272424 - MIRc SINE MIR -131 137 32 8 1141 330 227 0 124 chr12 72988411 72988612 -48268918 + (TCTCTG)n Simple_repeat Simple_repeat 4 179 0 8 1141 183 228 85 34 chr12 72989018 72989077 -48268453 - L2c LINE L2 -59 3328 3267 8 1141 528 282 23 0 chr12 72989195 72989326 -48268204 + RSINE1 SINE B4 3 136 -29 8 1141 257 246 163 19 chr12 72989533 72989707 -48267823 + L2c LINE L2 2957 3159 -228 8 1141 645 340 36 45 chr12 72989775 72989897 -48267633 + MER58B DNA MER1_type 15 133 -208 8 1141 541 246 52 38 chr12 72989897 72990108 -48267422 - ID_B1 SINE B4 -8 216 3 8 1141 645 340 36 45 chr12 72990108 72990315 -48267215 + MER58B DNA MER1_type 134 341 0 8 1141 193 218 17 68 chr12 72991058 72991117 -48266413 - L2a LINE L2 -94 3332 3277 8 1141 966 133 201 5 chr12 72991566 72991755 -48265775 - URR1A DNA MER1_type 0 226 1 8 1141 333 0 0 0 chr12 72992394 72992431 -48265099 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1141 318 216 67 11 chr12 72992435 72992524 -48265006 - L1M5 LINE L1 -439 5685 5592 8 1141 1105 144 17 0 chr12 72994513 72994693 -48262837 + URR1A DNA MER1_type 44 226 0 8 1141 529 244 114 0 chr12 72995650 72995781 -48261749 + RSINE1 SINE B4 3 148 -17 8 1141 368 143 36 0 chr12 72995928 72996012 -48261518 - Lx9 LINE L1 -2 7642 7556 8 1141 1650 183 51 8 chr12 72996061 72996414 -48261116 - Lx9 LINE L1 -294 7350 6983 8 1141 435 331 8 0 chr12 72998184 72998308 -48259222 + ID_B1 SINE B4 79 203 -21 8 1141 248 293 0 0 chr12 72998309 72998367 -48259163 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1141 256 241 19 0 chr12 72998370 72998424 -48259106 + ID SINE ID 3 57 -167 8 1141 745 251 177 36 chr12 72998433 72998710 -48258820 - MTEa LTR MaLR -12 367 52 8 1141 526 191 39 21 chr12 72998742 72998874 -48258656 + ID_B1 SINE B4 54 220 -4 8 1141 408 224 55 18 chr12 72998770 72998879 -48258651 + B1F SINE Alu 36 148 -1 8 1141 436 277 0 9 chr12 73000284 73000397 -48257133 + PB1D10 SINE Alu 1 112 -5 1 1141 567 96 0 0 chr12 73000455 73000538 -48256992 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 2 1141 582 54 0 0 chr12 73000965 73001039 -48256491 + (TTA)n Simple_repeat Simple_repeat 2 75 0 3 1141 348 206 44 0 chr12 73001044 73001112 -48256418 - ID2 SINE ID -11 72 2 4 1141 748 289 66 37 chr12 73001302 73001711 -48255819 - L1MB8 LINE L1 -201 5977 5557 5 1141 257 256 36 159 chr12 73001727 73001772 -48255758 - B2_Mm2 SINE B2 -18 177 7 6 1141 502 293 60 20 chr12 73001772 73001922 -48255608 - RSINE1 SINE B4 -2 163 8 7 1141 225 212 146 39 chr12 73002704 73002807 -48254723 - RLTR13D6 LTR ERVK -533 369 256 8 1141 1256 290 72 17 chr12 73002811 73003204 -48254326 - Lx8 LINE L1 -25 7448 7031 9 1141 1620 208 89 18 chr12 73003204 73003595 -48253935 + MTD LTR MaLR 1 419 0 1 1141 1256 290 72 17 chr12 73003595 73003671 -48253859 - Lx8 LINE L1 -443 7030 6953 9 1141 2120 81 69 16 chr12 73003673 73003976 -48253554 - ORR1A2 LTR MaLR -8 319 1 1 1141 2016 282 53 5 chr12 73003984 73004590 -48252940 - Lx8 LINE L1 -528 6945 6311 9 1141 22 35 0 0 chr12 73004700 73004729 -48252801 + AT_rich Low_complexity Low_complexity 1 29 0 1 1142 181 365 0 13 chr12 73007278 73007353 -48250177 + L2a LINE L2 3350 3423 -3 1 1142 192 77 0 0 chr12 73007395 73007421 -48250109 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1142 471 308 143 45 chr12 73007672 73007937 -48249593 + B4A SINE B4 2 292 0 1 1142 746 270 82 0 chr12 73010435 73010631 -48246899 + ID_B1 SINE B4 2 213 -11 1 1142 361 269 59 25 chr12 73010526 73010644 -48246886 + B1F SINE Alu 27 148 -1 1 1142 21 57 0 0 chr12 73010709 73010744 -48246786 + AT_rich Low_complexity Low_complexity 1 35 0 1 1142 325 311 87 34 chr12 73011006 73011272 -48246258 - B4A SINE B4 -11 281 2 1 1142 249 267 32 106 chr12 73011375 73011500 -48246030 - L2c LINE L2 -39 3348 3221 2 1142 204 333 69 0 chr12 73011794 73011866 -48245664 + L2c LINE L2 3258 3334 -53 2 1142 600 353 72 4 chr12 73012586 73012822 -48244708 + MIR SINE MIR 11 262 0 2 1142 211 294 35 12 chr12 73013813 73013899 -48243631 + MER5A DNA MER1_type 1 88 -101 2 1142 3516 25 2 0 chr12 73014168 73014563 -48242967 + MTA_Mm LTR MaLR 1 396 0 2 1142 185 244 89 89 chr12 73014978 73015113 -48242417 + MIR SINE MIR 13 147 -115 2 1142 1036 46 234 7 chr12 73015291 73015445 -48242085 + B2_Mm2 SINE B2 1 189 -6 2 1142 550 251 22 49 chr12 73015449 73015604 -48241926 + B3 SINE B2 69 215 -1 2 1142 243 323 118 93 chr12 73015763 73016128 -48241402 - ORR1A4 LTR MaLR 0 378 5 2 1142 716 225 0 26 chr12 73018331 73018486 -48239044 - RSINE1 SINE B4 -8 157 7 2 1142 342 0 0 0 chr12 73018801 73018839 -48238691 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1142 526 252 72 33 chr12 73019068 73019220 -48238310 - B4A SINE B4 -10 282 125 3 1142 219 239 0 0 chr12 73020701 73020747 -48236783 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1142 350 262 67 120 chr12 73022893 73023024 -48234506 - MLT2F LTR ERVL 0 663 540 3 1142 420 20 0 0 chr12 73023024 73023073 -48234457 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1142 1075 36 7 28 chr12 73023073 73023214 -48234316 - B1_Mus1 SINE Alu -9 139 2 3 1142 350 262 67 120 chr12 73023214 73023289 -48234241 - MLT2F LTR ERVL -124 539 468 3 1142 234 358 9 44 chr12 73023365 73023479 -48234051 - MLT2F LTR ERVL -368 295 186 3 1142 318 67 0 0 chr12 73023529 73023574 -48233956 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1142 186 192 0 0 chr12 73024238 73024290 -48233240 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1142 195 69 0 0 chr12 73024669 73024698 -48232832 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 3 1142 546 119 0 0 chr12 73025256 73025340 -48232190 + (TCC)n Simple_repeat Simple_repeat 2 85 0 3 1142 617 245 21 14 chr12 73025375 73025457 -48232073 + ID SINE ID 2 84 -140 4 1142 303 357 11 120 chr12 73025457 73025632 -48231898 + 7SLRNA srpRNA srpRNA 2 157 -157 4 1142 420 225 0 0 chr12 73025687 73025767 -48231763 + ID_B1 SINE B4 143 222 -2 4 1142 489 193 0 0 chr12 73028956 73029039 -48228491 - B3A SINE B2 -105 93 11 4 1142 254 372 0 0 chr12 73028969 73029047 -48228483 - RSINE1 SINE B4 -84 81 4 4 1142 1486 247 51 72 chr12 73029659 73029943 -48227587 - Lx9 LINE L1 0 7644 7371 4 1142 1427 197 125 21 chr12 73029943 73030280 -48227250 + ORR1D1 LTR MaLR 1 372 -2 4 1142 1486 247 51 72 chr12 73030280 73030562 -48226968 - Lx9 LINE L1 -274 7370 7090 4 1142 350 304 76 19 chr12 73030850 73031061 -48226469 + MER58A DNA MER1_type 1 223 -1 4 1142 618 26 0 0 chr12 73032743 73032819 -48224711 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1142 268 197 81 16 chr12 73033610 73033672 -48223858 + MERVL_2A-int LTR ERVL 4502 4611 -1150 4 1142 21 0 0 0 chr12 73033701 73033722 -48223808 + AT_rich Low_complexity Low_complexity 1 21 0 4 1142 655 284 105 45 chr12 73034097 73034344 -48223186 - MTD LTR MaLR -157 262 1 5 1142 435 292 35 9 chr12 73034477 73034591 -48222939 - PB1D10 SINE Alu 0 117 1 5 1142 303 28 0 0 chr12 73034604 73034640 -48222890 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1142 1200 41 14 0 chr12 73035894 73036039 -48221491 - B1_Mus2 SINE Alu 0 147 1 5 1142 300 111 0 0 chr12 73036115 73036160 -48221370 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1142 407 247 0 82 chr12 73036190 73036287 -48221243 + PB1D7 SINE Alu 10 98 -22 5 1142 315 0 0 0 chr12 73036381 73036416 -48221114 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 5 1142 268 42 83 0 chr12 73036801 73036849 -48220681 + (TTTCC)n Simple_repeat Simple_repeat 4 55 0 5 1142 1272 21 7 0 chr12 73036869 73037014 -48220516 - B1_Mus1 SINE Alu -1 147 2 5 1142 269 230 0 13 chr12 73038722 73038797 -48218733 + GA-rich Low_complexity Low_complexity 5 78 0 5 1142 206 233 87 65 chr12 73039847 73039939 -48217591 - MIRb SINE MIR -138 130 37 6 1142 444 82 0 0 chr12 73040741 73040802 -48216728 + (TAA)n Simple_repeat Simple_repeat 2 62 0 6 1142 940 224 272 13 chr12 73041661 73041959 -48215571 - MTE2a LTR MaLR -4 375 1 6 1142 889 234 27 50 chr12 73042025 73042245 -48215285 + B3 SINE B2 2 216 0 6 1142 186 103 0 0 chr12 73042337 73042366 -48215164 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1142 203 269 205 0 chr12 73042417 73042495 -48215035 + MER5A DNA MER1_type 29 122 -67 6 1142 357 24 0 0 chr12 73042519 73042561 -48214969 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1142 215 190 0 17 chr12 73042584 73042643 -48214887 + CT-rich Low_complexity Low_complexity 4 61 0 6 1142 257 167 19 0 chr12 73043312 73043366 -48214164 + CT-rich Low_complexity Low_complexity 1 55 0 6 1142 501 272 76 72 chr12 73043577 73043839 -48213691 + L1M4 LINE L1 5524 5786 -392 6 1142 337 197 26 0 chr12 73043845 73043921 -48213609 + L1MB7 LINE L1 6107 6184 0 7 1142 279 114 0 0 chr12 73044306 73044350 -48213180 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1142 247 269 51 13 chr12 73044412 73044491 -48213039 + Charlie15a DNA MER1_type 123 204 -20 7 1142 350 246 0 0 chr12 73044655 73044724 -48212806 + ID4_ SINE ID 6 74 -9 7 1142 956 231 11 5 chr12 73045605 73045792 -48211738 + B3 SINE B2 29 216 0 7 1142 221 309 20 30 chr12 73047016 73047116 -48210414 - PB1D10 SINE Alu -8 109 11 7 1142 539 287 36 48 chr12 73048726 73048891 -48208639 + RSINE1 SINE B4 3 165 0 7 1142 1265 35 0 0 chr12 73049672 73049817 -48207713 - B1_Mus2 SINE Alu -1 146 2 7 1142 1308 267 77 8 chr12 73049828 73050191 -48207339 + MTD LTR MaLR 18 405 -14 7 1142 207 258 0 0 chr12 73052942 73053004 -48204526 + CT-rich Low_complexity Low_complexity 1 62 0 7 1142 212 255 0 0 chr12 73056424 73056471 -48201059 - MIR SINE MIR -70 192 146 8 1142 330 270 97 45 chr12 73056716 73056871 -48200659 + MamRep1161 DNA TcMar 32 194 -763 8 1142 351 282 0 0 chr12 73057343 73057421 -48200109 - ID4 SINE ID -4 79 2 8 1142 501 216 149 0 chr12 73057505 73057639 -48199891 + RSINE1 SINE B4 4 157 -8 8 1142 211 328 0 0 chr12 73059229 73059287 -48198243 + ID4_ SINE ID 3 60 -23 8 1142 291 28 0 0 chr12 73059308 73059344 -48198186 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1142 270 0 0 0 chr12 73060614 73060644 -48196886 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1142 660 162 6 119 chr12 73061220 73061239 -48196291 - B1_Mur3 SINE Alu 0 149 137 8 1142 241 47 23 23 chr12 73061239 73061283 -48196247 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 8 1142 660 162 6 119 chr12 73061283 73061431 -48196099 - B1_Mur3 SINE Alu -13 136 1 8 1142 1048 62 0 0 chr12 73061603 73061731 -48195799 + B1_Mus1 SINE Alu 2 129 -19 8 1142 751 239 108 5 chr12 73062451 73062636 -48194894 - B3 SINE B2 -12 204 1 9 1142 4427 20 2 0 chr12 73064079 73064571 -48192959 + MT2_Mm LTR ERVL 1 493 0 9 1142 8546 11 20 0 chr12 73064571 73066224 -48191306 + MERVL-int LTR ERVL 1 1686 -3799 9 1142 17231 25 1 0 chr12 73066218 73068142 -48189388 + MERVL-int LTR ERVL 3436 5360 -125 9 1142 403 167 46 35 chr12 73068142 73068229 -48189301 + ORR1A3-int LTR MaLR 553 640 -1323 9 1142 319 0 0 0 chr12 73068229 73068267 -48189263 + MERVL-int LTR ERVL 5448 5485 0 9 1142 4427 20 2 0 chr12 73068267 73068759 -48188771 + MT2_Mm LTR ERVL 1 493 0 9 1142 525 16 0 0 chr12 73069662 73069724 -48187806 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1142 481 257 97 0 chr12 73070555 73070699 -48186831 + RSINE1 SINE B4 2 159 -6 9 1142 729 236 18 48 chr12 73072359 73072524 -48185006 + B3A SINE B2 6 165 -33 9 1142 915 36 0 0 chr12 73075236 73075347 -48182183 + (TC)n Simple_repeat Simple_repeat 2 112 0 9 1142 194 271 104 0 chr12 73075766 73075814 -48181716 + MIRm SINE MIR 20 72 -204 9 1142 378 276 50 36 chr12 73076678 73076817 -48180713 - MER117 DNA MER1_type -54 143 3 9 1142 928 99 28 0 chr12 73078999 73079140 -48178390 - URR1A DNA MER1_type 0 226 82 9 1142 369 0 0 0 chr12 73079209 73079250 -48178280 + (CTCA)n Simple_repeat Simple_repeat 1 41 0 1 1142 317 261 344 0 chr12 73079251 73079373 -48178157 + RSINE1 SINE B4 2 165 0 1 1142 24 53 0 0 chr12 73079374 73079412 -48178118 + AT_rich Low_complexity Low_complexity 1 38 0 1 1142 243 306 40 10 chr12 73080044 73080143 -48177387 - MIRc SINE MIR -46 222 121 1 1142 315 233 8 30 chr12 73080456 73080481 -48177049 + ORR1B1-int LTR MaLR 625 646 -863 1 1142 974 25 0 32 chr12 73080481 73080607 -48176923 + B1_Mus1 SINE Alu 1 122 -26 1 1142 360 250 181 7 chr12 73081106 73081255 -48176275 + MER5B DNA MER1_type 2 176 -2 1 1142 380 257 79 0 chr12 73082069 73082170 -48175360 + B1F SINE Alu 36 144 -5 1 1142 882 0 0 0 chr12 73082595 73082693 -48174837 + (TCTCCC)n Simple_repeat Simple_repeat 5 102 0 1 1142 335 243 68 0 chr12 73083261 73083335 -48174195 - HAL1-3A_ME LINE L1 -805 2053 1975 1 1142 432 97 0 0 chr12 73083336 73083398 -48174132 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1142 345 297 113 13 chr12 73083407 73083557 -48173973 - RSINE1 SINE B4 0 165 1 1 1142 1936 212 9 24 chr12 73085125 73085550 -48171980 - MTD LTR MaLR 0 419 1 1 1142 222 182 0 35 chr12 73086313 73086370 -48171160 + A-rich Low_complexity Low_complexity 2 56 0 1 1142 1395 169 174 22 chr12 73087401 73087763 -48169767 - MTD LTR MaLR -2 417 1 1 1142 567 257 39 7 chr12 73088535 73088688 -48168842 + RSINE1 SINE B4 3 160 -5 1 1142 22 35 0 0 chr12 73088714 73088743 -48168787 + AT_rich Low_complexity Low_complexity 1 29 0 1 1142 189 0 0 0 chr12 73090425 73090446 -48167084 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1142 227 240 0 0 chr12 73090984 73091034 -48166496 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1142 420 279 0 28 chr12 73092290 73092397 -48165133 - L2c LINE L2 -1 3386 3283 1 1142 378 0 0 0 chr12 73094130 73094172 -48163358 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1142 307 305 78 94 chr12 73094228 73094420 -48163110 - B4A SINE B4 -52 240 52 1 1142 280 166 125 0 chr12 73094672 73094730 -48162800 + B3A SINE B2 1 67 -128 1 1142 1129 183 0 33 chr12 73094801 73095016 -48162514 + B3 SINE B2 3 210 -6 1 1142 216 190 0 23 chr12 73095141 73095184 -48162346 + CT-rich Low_complexity Low_complexity 5 46 0 1 1142 823 159 16 109 chr12 73095720 73095903 -48161627 - URR1A DNA MER1_type -5 221 56 1 1142 299 254 108 68 chr12 73095806 73095954 -48161576 + CYRA11_Mm Unknown Y-chromosome 248 401 -216 1 1142 851 278 62 34 chr12 73096357 73096715 -48160815 + L1MC1 LINE L1 4285 4652 -1494 1 1142 506 268 148 23 chr12 73096718 73096894 -48160636 + RMER30 DNA MER1_type 5 202 0 1 1142 325 269 157 62 chr12 73097014 73097224 -48160306 + L1MC1 LINE L1 4902 5131 -1015 1 1142 297 263 10 29 chr12 73097256 73097373 -48160157 + ID4 SINE ID 15 128 -24 1 1142 1405 256 163 19 chr12 73097373 73098081 -48159449 + L1MC1 LINE L1 5185 5980 -353 1 1142 431 242 158 21 chr12 73098151 73098341 -48159189 + L1MC1 LINE L1 6107 6322 -11 1 1142 631 189 0 99 chr12 73098501 73098642 -48158888 + RSINE1 SINE B4 25 151 -14 1 1142 468 0 0 0 chr12 73098654 73098706 -48158824 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1142 473 84 0 14 chr12 73098733 73098805 -48158725 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 1142 568 185 0 29 chr12 73099059 73099198 -48158332 + CT-rich Low_complexity Low_complexity 4 138 0 1 1142 529 239 59 54 chr12 73100153 73100339 -48157191 - B2_Mm2 SINE B2 -8 187 1 1 1142 1265 88 23 0 chr12 73100496 73100667 -48156863 + B2_Mm2 SINE B2 8 182 -13 1 1142 276 166 178 43 chr12 73100667 73100764 -48156766 + B2_Mm2 SINE B2 3 109 -107 1 1142 25 0 0 0 chr12 73100776 73100801 -48156729 + AT_rich Low_complexity Low_complexity 1 25 0 1 1142 462 340 72 38 chr12 73101306 73102103 -48155427 + RLTR14-int LTR ERV1 1744 3249 -4357 1 1142 436 327 67 32 chr12 73102154 73102495 -48155035 + RLTR14-int LTR ERV1 2252 2490 -2573 1 1142 260 355 27 27 chr12 73102757 73102942 -48154588 + RLTR14-int LTR ERV1 4028 4212 -3240 1 1142 182 37 37 0 chr12 73103502 73103529 -48154001 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 1 1142 1222 55 0 0 chr12 73103545 73103691 -48153839 - B1_Mus2 SINE Alu 0 147 2 1 1142 1053 325 73 43 chr12 73103692 73104365 -48153165 + RLTR14-int LTR ERV1 3188 3880 -1437 1 1142 5950 103 13 4 chr12 73104906 73105732 -48151798 - Lx LINE L1 -6 6648 5815 1 1142 1636 102 2 9 chr12 73105815 73106059 -48151471 - Lx LINE L1 -1815 5829 5593 1 1142 238 0 0 75 chr12 73106143 73106183 -48151347 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 1 1142 381 70 0 0 chr12 73107023 73107080 -48150450 + (A)n Simple_repeat Simple_repeat 1 57 0 1 1142 246 333 146 67 chr12 73107546 73107951 -48149579 + L2a LINE L2 2986 3422 -4 1 1142 195 395 105 0 chr12 73108650 73108764 -48148766 + L2 LINE L2 2323 2448 -971 1 1142 885 93 2 31 chr12 73108939 73109091 -48148439 - B1_Mus1 SINE Alu 0 150 2 1 1142 582 215 35 56 chr12 73109181 73109324 -48148206 + B1F2 SINE Alu 3 142 -7 1 1142 189 107 0 0 chr12 73109324 73109352 -48148178 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1142 243 146 0 0 chr12 73109637 73109678 -48147852 + (TCC)n Simple_repeat Simple_repeat 1 41 0 1 1142 318 50 0 0 chr12 73109758 73109798 -48147732 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1142 778 166 7 22 chr12 73109962 73110098 -48147432 + B1_Mus2 SINE Alu 5 138 -9 1 1142 248 292 64 99 chr12 73109967 73110138 -48147392 + B4A SINE B4 95 259 -33 1 1142 459 0 0 0 chr12 73110803 73110854 -48146676 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1142 375 264 102 56 chr12 73110957 73111096 -48146434 - RMER2 LTR ERV1 -453 114 1 1 1142 340 308 105 35 chr12 73111161 73111227 -48146303 - B2_Mm2 SINE B2 -1 215 8 1 1142 715 225 0 30 chr12 73111227 73111360 -48146170 - RSINE1 SINE B4 -29 136 8 1 1142 404 246 90 21 chr12 73111378 73111523 -48146007 - MER53 DNA hAT -31 162 8 1 1142 2737 210 100 67 chr12 73111599 73111758 -48145772 - RLTR25B LTR ERVK 0 1028 841 1 1142 387 60 0 0 chr12 73111758 73111808 -48145722 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1142 405 0 0 0 chr12 73111808 73111852 -48145678 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1142 2732 220 93 60 chr12 73111852 73112041 -48145489 - RLTR25B LTR ERVK -188 840 622 1 1142 378 0 0 0 chr12 73112041 73112083 -48145447 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1142 396 0 0 0 chr12 73112083 73112126 -48145404 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1142 2732 220 93 60 chr12 73112126 73112769 -48144761 - RLTR25B LTR ERVK -407 621 4 1 1142 695 264 68 19 chr12 73113263 73113468 -48144062 + B3 SINE B2 2 216 0 1 1142 617 217 8 0 chr12 73113770 73114027 -48143503 + (TG)n Simple_repeat Simple_repeat 1 259 0 1 1142 472 276 126 74 chr12 73114046 73114316 -48143214 - B4A SINE B4 -8 284 1 1 1142 246 241 33 82 chr12 73114519 73114641 -48142889 - PB1D7 SINE Alu 0 120 5 1 1142 26 0 0 0 chr12 73116805 73116831 -48140699 + AT_rich Low_complexity Low_complexity 1 26 0 1 1142 236 320 13 0 chr12 73117251 73117329 -48140201 + ID4_ SINE ID 4 82 -1 1 1142 438 20 0 0 chr12 73117339 73117390 -48140140 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1142 3000 177 67 74 chr12 73117883 73118670 -48138860 + ORR1A4-int LTR MaLR 1182 1963 0 1 1142 1868 94 4 0 chr12 73118670 73118946 -48138584 + ORR1A4 LTR MaLR 1 277 -52 1 1142 299 307 0 0 chr12 73119126 73119201 -48138329 - ID4_ SINE ID -8 75 1 1 1142 636 222 37 53 chr12 73119702 73119870 -48137660 - B3A SINE B2 -10 188 29 1 1142 1366 71 49 5 chr12 73119870 73120054 -48137476 - B2_Mm2 SINE B2 -1 194 3 1 1142 636 222 37 53 chr12 73120054 73120075 -48137455 - B3A SINE B2 -170 28 3 1 1142 303 287 29 122 chr12 73120196 73120335 -48137195 - ID_B1 SINE B4 -18 206 81 1 1142 351 0 0 0 chr12 73120562 73120601 -48136929 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1142 414 0 0 0 chr12 73120806 73120852 -48136678 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1142 276 200 75 30 chr12 73121562 73121629 -48135901 + MLT1B LTR MaLR 321 390 0 1 1142 468 0 0 0 chr12 73121765 73121817 -48135713 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1142 27 0 0 0 chr12 73122921 73122948 -48134582 + AT_rich Low_complexity Low_complexity 1 27 0 1 1142 283 287 0 11 chr12 73123294 73123382 -48134148 - L1MB8 LINE L1 -6 6178 6092 1 1142 1220 224 73 26 chr12 73123471 73123811 -48133719 - L1MB8 LINE L1 -118 6060 5705 1 1142 1030 202 283 29 chr12 73124133 73124511 -48133019 + RMER15 LTR ERVL 27 500 -75 1 1142 1815 198 169 34 chr12 73124538 73125035 -48132495 + RMER19B LTR ERVK 339 902 0 1 1142 221 319 8 56 chr12 73125336 73125462 -48132068 - L2c LINE L2 0 3387 3268 1 1142 402 85 0 0 chr12 73127527 73127586 -48129944 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 1 1142 640 234 14 21 chr12 73127588 73127728 -48129802 - RSINE1 SINE B4 0 165 27 1 1142 2019 181 147 68 chr12 73127867 73128426 -48129104 - RMER19C LTR ERVK 0 611 9 1 1142 354 74 0 0 chr12 73128671 73128725 -48128805 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1142 1423 181 78 48 chr12 73129863 73130298 -48127232 + RMER16 LTR ERVK 1 533 0 1 1142 3338 43 0 10 chr12 73130811 73131211 -48126319 - MTA_Mm LTR MaLR 0 396 1 1 1142 267 305 145 29 chr12 73131850 73132022 -48125508 + MIR SINE MIR 13 204 -58 1 1142 456 19 0 0 chr12 73133360 73133413 -48124117 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1142 678 194 318 4 chr12 73133595 73133869 -48123661 + ORR1D2 LTR MaLR 1 360 -10 1 1142 2118 84 16 46 chr12 73133873 73134196 -48123334 + L1Md_F2 LINE L1 6270 6582 0 1 1142 4143 241 37 24 chr12 73134768 73135720 -48121810 + RMER1C Other Other 379 1342 0 1 1142 24 67 0 0 chr12 73135782 73135827 -48121703 + AT_rich Low_complexity Low_complexity 1 45 0 1 1142 2411 62 6 9 chr12 73135843 73136167 -48121363 - L1_Mus3 LINE L1 0 6638 6316 1 1142 1421 325 78 23 chr12 73136410 73137193 -48120337 + L1MD1 LINE L1 5388 6213 -29 1 1142 1898 202 23 106 chr12 73137346 73137876 -48119654 + RLTR18B LTR ERVK 1 486 -26 1 1143 642 296 124 47 chr12 73138232 73138618 -48118912 + MLT1D LTR MaLR 85 500 -5 2 1143 542 293 90 0 chr12 73138682 73138849 -48118681 + ID_B1 SINE B4 4 185 -39 2 1143 324 0 0 0 chr12 73138857 73138893 -48118637 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1143 1157 214 20 25 chr12 73139458 73139702 -48117828 + Lx6 LINE L1 7215 7457 -3 2 1143 240 163 0 0 chr12 73140192 73140235 -48117295 + GA-rich Low_complexity Low_complexity 1 43 0 2 1143 374 240 83 0 chr12 73140747 73140868 -48116662 + L1M4 LINE L1 2401 2531 -3615 2 1143 292 264 66 114 chr12 73141110 73141174 -48116356 + L1M4 LINE L1 4060 4130 -2010 2 1143 2786 132 42 13 chr12 73141174 73141627 -48115903 + RMER4A LTR ERVK 1 466 0 2 1143 292 264 66 114 chr12 73141627 73141729 -48115801 + L1M4 LINE L1 4131 4218 -1922 2 1143 639 60 0 0 chr12 73141732 73141816 -48115714 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1143 682 196 54 61 chr12 73141817 73141964 -48115566 + B1_Mur1 SINE Alu 3 148 -1 2 1143 705 184 41 28 chr12 73141967 73142112 -48115418 + B1_Mur3 SINE Alu 2 148 -1 2 1143 291 337 11 0 chr12 73142242 73142337 -48115193 + B3 SINE B2 116 211 -5 2 1143 394 280 64 81 chr12 73142356 73142714 -48114816 + L1M4 LINE L1 4257 4608 -1538 2 1143 371 228 96 9 chr12 73142927 73143042 -48114488 + B3 SINE B2 86 210 -6 2 1143 346 354 128 22 chr12 73143506 73143818 -48113712 - LTR16A LTR ERVL -106 345 1 2 1143 276 255 67 19 chr12 73143869 73143973 -48113557 + PB1D10 SINE Alu 2 110 -7 2 1143 271 260 111 58 chr12 73144217 73144425 -48113105 - RLTR15 LTR ERVK -8 351 133 2 1143 343 176 116 36 chr12 73144505 73144617 -48112913 - RLTR15 LTR ERVK -238 121 1 2 1143 324 0 0 0 chr12 73146192 73146228 -48111302 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1143 238 259 12 58 chr12 73146234 73146320 -48111210 + CT-rich Low_complexity Low_complexity 3 84 0 2 1143 2719 128 14 7 chr12 73146882 73147300 -48110230 - MTC LTR MaLR 0 421 1 2 1143 272 250 0 0 chr12 73147948 73148008 -48109522 + B3A SINE B2 97 156 -42 2 1143 2759 113 9 51 chr12 73148074 73148604 -48108926 + RLTR28 LTR ERVL 1 508 -16 2 1143 1161 68 7 0 chr12 73150374 73150521 -48107009 + B1_Mus1 SINE Alu 1 148 0 2 1143 4400 48 31 13 chr12 73151015 73151569 -48105961 - LTRIS2 LTR ERV1 0 564 1 2 1143 325 256 0 32 chr12 73151641 73151734 -48105796 + L1_Rod LINE L1 3794 3883 -1964 2 1143 280 130 39 0 chr12 73151734 73151811 -48105719 + T-rich Low_complexity Low_complexity 4 83 0 2 1143 714 286 178 20 chr12 73152043 73152719 -48104811 + L1M2 LINE L1 3961 4742 -1135 2 1143 1958 134 3 39 chr12 73152719 73153083 -48104447 + RMER6B LTR ERVK 1 351 -110 2 1143 7777 138 50 36 chr12 73153083 73153641 -48103889 - MYSERV6-int LTR ERVK -1195 7764 7176 2 1143 1972 174 68 84 chr12 73153641 73154094 -48103436 + RLTR41 LTR ERV1 1 446 0 2 1143 7777 138 50 36 chr12 73154094 73154900 -48102630 - MYSERV6-int LTR ERVK -1784 7175 6382 2 1143 1121 186 23 78 chr12 73155042 73155351 -48102179 + RMER16 LTR ERVK 242 533 0 2 1143 289 219 46 18 chr12 73155375 73155450 -48102080 - B1_Mus1 SINE Alu -78 71 1 2 1143 323 172 0 0 chr12 73155450 73155508 -48102022 - MYSERV6-int LTR ERVK -2676 6283 6226 2 1143 838 269 45 135 chr12 73155508 73155929 -48101601 + L1M2 LINE L1 4769 5147 -996 2 1143 424 148 18 27 chr12 73155929 73156040 -48101490 + Lx5 LINE L1 6940 7049 -1 2 1143 838 278 45 122 chr12 73156040 73156350 -48101180 + L1M2 LINE L1 5129 5416 -464 2 1143 226 319 129 0 chr12 73156354 73156470 -48101060 + L1_Mur3 LINE L1 666 796 -6916 2 1143 574 250 131 33 chr12 73156482 73156726 -48100804 + L1_Mur3 LINE L1 556 823 -6905 2 1143 1392 255 38 80 chr12 73156975 73157715 -48099815 + RMER19C LTR ERVK 1 737 0 2 1143 2061 155 75 92 chr12 73157779 73158233 -48099297 - RLTR41 LTR ERV1 0 446 1 2 1143 271 273 0 0 chr12 73158287 73158353 -48099177 + L1_Mur3 LINE L1 843 908 -6820 2 1143 1336 180 111 22 chr12 73158353 73158756 -48098774 + RMER16 LTR ERVK 1 530 -3 2 1143 951 194 124 8 chr12 73158759 73158992 -48098538 + L1_Mur3 LINE L1 903 1167 -6561 2 1143 1357 71 0 42 chr12 73158992 73159183 -48098347 + B2_Mm1a SINE B2 2 184 -9 2 1143 951 194 124 8 chr12 73159183 73159214 -48098316 + L1_Mur3 LINE L1 1168 1198 -6530 2 1143 8227 176 131 54 chr12 73159239 73160460 -48097070 + L1_Mur3 LINE L1 1326 2707 -3173 2 1143 1202 41 0 27 chr12 73160460 73160598 -48096932 + B1_Mus2 SINE Alu 3 139 -8 2 1143 879 37 0 0 chr12 73160598 73160705 -48096825 + (GAA)n Simple_repeat Simple_repeat 1 107 0 2 1143 8227 176 131 54 chr12 73160715 73160985 -48096545 + L1_Mur3 LINE L1 2708 2954 -2926 2 1143 1183 54 0 26 chr12 73160985 73161136 -48096394 - B1_Mus1 SINE Alu 0 148 2 2 1143 8227 176 131 54 chr12 73161136 73161889 -48095641 + L1_Mur3 LINE L1 2955 3744 -2136 2 1143 3731 213 48 9 chr12 73161883 73162771 -48094759 + Lx7 LINE L1 6601 7692 -4 2 1143 1156 283 48 44 chr12 73162767 73163262 -48094268 + L1MA4A LINE L1 5468 5964 -336 2 1143 570 124 103 0 chr12 73163908 73164005 -48093525 - B1_Mus2 SINE Alu -38 109 3 2 1143 852 290 163 33 chr12 73164247 73164879 -48092651 - L1M4b LINE L1 -5991 1343 630 2 1143 2532 83 0 9 chr12 73165263 73165593 -48091937 + ORR1A2 LTR MaLR 1 327 0 2 1143 1850 193 25 14 chr12 73165960 73166322 -48091208 + ORR1D1 LTR MaLR 9 374 0 2 1143 282 349 46 8 chr12 73167033 73167163 -48090367 + MIR SINE MIR 4 138 -124 2 1143 1810 182 137 11 chr12 73167190 73167650 -48089880 + RLTR11A2 LTR ERVK 10 527 0 2 1143 219 167 24 0 chr12 73168067 73168109 -48089421 + CT-rich Low_complexity Low_complexity 2 44 0 2 1143 387 0 0 0 chr12 73169708 73169751 -48087779 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2 1143 263 28 28 0 chr12 73170194 73170230 -48087300 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1143 21 36 0 0 chr12 73171939 73171967 -48085563 + GC_rich Low_complexity Low_complexity 1 28 0 2 1143 225 291 62 86 chr12 73172807 73172935 -48084595 - MER20 DNA MER1_type -1 218 94 2 1143 2183 106 41 6 chr12 73173318 73173633 -48083897 + ORR1A3 LTR MaLR 1 326 0 2 1143 209 161 0 67 chr12 73173949 73174009 -48083521 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 2 1143 1115 135 37 11 chr12 73174202 73174389 -48083141 + B2_Mm2 SINE B2 3 194 -1 2 1143 1990 159 39 6 chr12 73175452 73175812 -48081718 + ORR1D1 LTR MaLR 1 372 -2 2 1143 748 270 128 19 chr12 73176221 73176534 -48080996 + ORR1E LTR MaLR 9 355 -4 2 1143 404 256 54 39 chr12 73176718 73176848 -48080682 + ORR1D2 LTR MaLR 105 236 -134 2 1143 954 246 110 63 chr12 73177351 73177559 -48079971 - Charlie1b DNA MER1_type -6 517 296 2 1143 1179 68 0 7 chr12 73177559 73177707 -48079823 + B1_Mus1 SINE Alu 1 147 -1 2 1143 954 246 110 63 chr12 73177707 73177989 -48079541 - Charlie1b DNA MER1_type -228 295 4 2 1143 523 158 11 0 chr12 73179932 73180027 -48077503 - B3 SINE B2 -117 99 4 2 1143 282 29 0 0 chr12 73181983 73182018 -48075512 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1143 3380 16 39 0 chr12 73182265 73182646 -48074884 - MTA_Mm LTR MaLR 0 396 1 2 1143 810 81 271 20 chr12 73182752 73182903 -48074627 - B2_Mm1t SINE B2 -4 189 1 2 1143 1343 119 239 36 chr12 73182913 73183219 -48074311 - BGLII_Mus LTR ERVK -54 368 1 2 1143 246 114 0 0 chr12 73183339 73183374 -48074156 + U2 snRNA snRNA 1 35 -153 2 1143 1030 92 7 0 chr12 73184240 73184382 -48073148 - B1_Mm SINE Alu 0 147 5 2 1143 1650 32 0 0 chr12 73184712 73184900 -48072630 + B2_Mm1a SINE B2 2 189 -4 2 1143 347 156 12 98 chr12 73184904 73185003 -48072527 + B1_Mur1 SINE Alu 31 149 0 2 1143 441 0 0 0 chr12 73186861 73186910 -48070620 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1143 725 214 0 0 chr12 73187551 73187691 -48069839 - B1_Mus2 SINE Alu -6 141 2 2 1143 870 174 38 75 chr12 73187932 73188144 -48069386 + B3 SINE B2 3 206 -10 2 1143 25 83 0 0 chr12 73188153 73188213 -48069317 + AT_rich Low_complexity Low_complexity 1 60 0 2 1143 242 87 0 21 chr12 73188301 73188348 -48069182 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1143 423 158 29 87 chr12 73188981 73189085 -48068445 - RMER4A LTR ERVK -61 405 308 2 1143 1404 185 156 51 chr12 73189087 73189458 -48068072 - RMER4A LTR ERVK 0 466 57 2 1143 1468 72 0 5 chr12 73189514 73189709 -48067821 - B2_Mm2 SINE B2 -1 194 1 2 1143 330 265 92 35 chr12 73189779 73189920 -48067610 - RSINE1 SINE B4 -15 150 2 2 1143 441 0 0 0 chr12 73189933 73189982 -48067548 + (TAA)n Simple_repeat Simple_repeat 2 50 0 2 1143 2282 172 71 23 chr12 73191493 73192008 -48065522 - RLTR31_Mur LTR ERVK 0 553 6 2 1143 195 152 0 0 chr12 73192384 73192430 -48065100 + T-rich Low_complexity Low_complexity 1 46 0 2 1143 1183 41 7 7 chr12 73192431 73192578 -48064952 - B1_Mus2 SINE Alu 0 147 1 2 1143 560 258 8 15 chr12 73193989 73194123 -48063407 + B3 SINE B2 1 133 -83 2 1143 220 250 9 9 chr12 73194210 73194323 -48063207 + (TTAA)n Simple_repeat Simple_repeat 4 116 0 2 1143 648 241 0 0 chr12 73194324 73194461 -48063069 - B1F SINE Alu -8 141 5 2 1143 357 24 0 0 chr12 73194544 73194586 -48062944 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1143 352 231 44 148 chr12 73194723 73194755 -48062775 + MT2B LTR ERVL 153 237 -364 2 1143 845 66 0 24 chr12 73194755 73194879 -48062651 + B1_Mus1 SINE Alu 17 137 -11 2 1143 352 231 44 148 chr12 73194879 73194906 -48062624 + MT2B LTR ERVL 238 316 -285 2 1143 1209 70 80 11 chr12 73195280 73195468 -48062062 - ORR1A2 LTR MaLR 0 327 127 2 1143 999 223 229 20 chr12 73196620 73196922 -48060608 - ORR1D2 LTR MaLR -1 369 5 2 1143 4611 50 5 2 chr12 73199615 73200179 -48057351 - L1Md_F2 LINE L1 0 6582 6017 2 1143 281 311 90 25 chr12 73200527 73200649 -48056881 - MER105 DNA DNA -7 197 68 2 1143 364 315 39 47 chr12 73200703 73200936 -48056594 + MER58B DNA MER1_type 80 310 -31 2 1143 243 0 0 0 chr12 73201827 73201854 -48055676 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1143 256 244 0 93 chr12 73203375 73203461 -48054069 + B1_Mur3 SINE Alu 39 116 -33 2 1143 275 0 29 0 chr12 73203462 73203497 -48054033 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 2 1143 489 276 120 8 chr12 73204376 73204610 -48052920 + L1_Rod LINE L1 5536 5795 -52 2 1143 438 136 0 0 chr12 73205089 73205170 -48052360 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1143 383 263 134 35 chr12 73205193 73205335 -48052195 - RSINE1 SINE B4 -7 158 3 2 1143 223 337 32 0 chr12 73206192 73206287 -48051243 + L2c LINE L2 3280 3377 -10 3 1143 252 153 0 48 chr12 73206353 73206415 -48051115 - B3 SINE B2 0 216 158 3 1143 369 160 124 48 chr12 73206447 73206552 -48050978 + PB1D10 SINE Alu 4 116 -1 3 1143 588 40 0 0 chr12 73207500 73207575 -48049955 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1143 30 59 0 0 chr12 73207706 73207757 -48049773 + AT_rich Low_complexity Low_complexity 1 51 0 3 1143 531 43 0 0 chr12 73207780 73207850 -48049680 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1143 245 70 47 0 chr12 73207850 73207892 -48049638 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 3 1143 384 236 197 3 chr12 73208153 73208362 -48049168 + MLT1G3 LTR MaLR 165 419 -160 3 1143 228 238 0 0 chr12 73208478 73208541 -48048989 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1143 324 0 0 0 chr12 73208555 73208591 -48048939 + (TATG)n Simple_repeat Simple_repeat 2 37 0 3 1143 513 220 0 0 chr12 73208597 73208697 -48048833 - B3A SINE B2 -98 100 1 3 1143 256 319 91 39 chr12 73208738 73209044 -48048486 + L1ME2 LINE L1 5341 5657 -505 3 1143 507 17 0 0 chr12 73209211 73209271 -48048259 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1143 553 212 27 81 chr12 73209282 73209431 -48048099 - B1F SINE Alu -8 141 1 3 1143 269 350 86 41 chr12 73209601 73209845 -48047685 - ORR1E LTR MaLR -28 331 77 3 1143 230 311 75 28 chr12 73209905 73210011 -48047519 + L1ME2 LINE L1 6039 6149 -15 3 1143 1866 248 55 50 chr12 73211394 73212053 -48045477 + RLTR40 LTR ERVK 1 662 -155 3 1143 511 266 140 37 chr12 73212673 73213024 -48044506 + L1ME3A LINE L1 5615 6001 -172 3 1143 420 305 116 5 chr12 73213696 73213894 -48043636 - ID_B1 SINE B4 -3 221 2 3 1143 650 229 6 0 chr12 73214048 73214227 -48043303 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1143 180 0 0 0 chr12 73214248 73214268 -48043262 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1143 248 298 82 53 chr12 73214799 73214969 -48042561 + ORR1E LTR MaLR 80 254 -105 3 1143 195 42 0 0 chr12 73215334 73215358 -48042172 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1143 304 287 11 11 chr12 73215630 73215725 -48041805 - B4A SINE B4 -197 95 1 3 1143 639 238 58 26 chr12 73216213 73216403 -48041127 - B3A SINE B2 -2 196 1 3 1143 1393 28 6 11 chr12 73216432 73216611 -48040919 + (TTCTC)n Simple_repeat Simple_repeat 2 179 0 3 1143 538 167 25 25 chr12 73216612 73216772 -48040758 + CT-rich Low_complexity Low_complexity 1 160 0 3 1143 205 146 42 0 chr12 73218804 73218852 -48038678 + GA-rich Low_complexity Low_complexity 1 50 0 3 1143 1699 206 51 27 chr12 73219425 73219834 -48037696 + MTD LTR MaLR 1 419 0 3 1143 1792 148 75 63 chr12 73220280 73220470 -48037060 - ORR1B2 LTR MaLR -1 366 166 3 1143 477 0 0 0 chr12 73220470 73220523 -48037007 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1143 1792 148 75 63 chr12 73220523 73220694 -48036836 - ORR1B2 LTR MaLR -202 165 3 3 1143 234 0 0 0 chr12 73220785 73220811 -48036719 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1143 277 259 106 43 chr12 73221185 73221326 -48036204 + LTR87 LTR ERVL? 469 618 -6 3 1143 331 323 89 12 chr12 73221697 73221866 -48035664 + MLT2F LTR ERVL 203 384 -279 3 1143 315 302 35 28 chr12 73222038 73222273 -48035257 - MMSAT4 Satellite Satellite -5 236 1 3 1143 372 310 13 25 chr12 73222290 73222671 -48034859 - MMSAT4 Satellite Satellite -5 376 1 3 1143 586 105 0 11 chr12 73223384 73223471 -48034059 + BC1_Mm scRNA scRNA 2 87 -65 3 1143 206 406 92 18 chr12 73223678 73223841 -48033689 + L2 LINE L2 2706 2880 -539 3 1143 721 259 44 10 chr12 73224572 73224770 -48032760 - B3A SINE B2 -1 215 5 3 1143 495 131 0 0 chr12 73225120 73225188 -48032342 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1143 1264 71 107 0 chr12 73225188 73225357 -48032173 - B2_Mm2 SINE B2 -8 187 1 3 1143 495 131 0 0 chr12 73225357 73225372 -48032158 + (TC)n Simple_repeat Simple_repeat 2 16 0 3 1143 2996 24 30 6 chr12 73225952 73226288 -48031242 + MTA_Mm LTR MaLR 1 344 -2 3 1143 9646 42 2 2 chr12 73226290 73227388 -48030142 + MTA_Mm-int LTR MaLR 1 1098 0 3 1143 3468 51 2 2 chr12 73227388 73227784 -48029746 + MTA_Mm LTR MaLR 1 396 0 3 1143 23 0 0 0 chr12 73227896 73227919 -48029611 + AT_rich Low_complexity Low_complexity 1 23 0 3 1143 1108 277 50 28 chr12 73227982 73228342 -48029188 + ORR1D2 LTR MaLR 3 370 0 3 1143 1918 75 0 28 chr12 73228677 73228925 -48028605 - L1Md_T LINE L1 0 6582 6342 3 1143 522 318 54 0 chr12 73229671 73229819 -48027711 + RSINE1 SINE B4 3 158 -7 3 1143 378 0 0 0 chr12 73229819 73229861 -48027669 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 1143 553 276 47 0 chr12 73230992 73231119 -48026411 + ETnERV2-int LTR ERVK 7070 7202 -204 3 1143 378 0 0 0 chr12 73231510 73231552 -48025978 + (CAA)n Simple_repeat Simple_repeat 2 43 0 3 1143 346 116 316 26 chr12 73231624 73231738 -48025792 - B2_Mm2 SINE B2 -2 193 47 3 1143 1294 75 45 23 chr12 73231807 73231984 -48025546 - B2_Mm2 SINE B2 -14 181 1 3 1143 707 199 13 52 chr12 73233135 73233289 -48024241 + B1_Mur2 SINE Alu 2 149 0 3 1143 266 271 50 25 chr12 73233505 73233626 -48023904 + L1MC4 LINE L1 7919 8042 0 3 1143 291 146 0 0 chr12 73233829 73233884 -48023646 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1143 282 160 0 0 chr12 73233966 73234016 -48023514 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1143 327 214 181 57 chr12 73234032 73234269 -48023261 - L1MA9 LINE L1 -386 5917 5633 3 1143 2505 166 82 32 chr12 73234286 73234789 -48022741 - RLTR12B LTR ERVK 0 528 1 3 1143 4237 170 119 31 chr12 73234801 73235756 -48021774 - MYSERV6-int LTR ERVK -104 8855 7817 3 1143 673 277 113 35 chr12 73235756 73236325 -48021205 - L1MA9 LINE L1 -679 5621 5011 3 1143 29 28 0 0 chr12 73236572 73236608 -48020922 + AT_rich Low_complexity Low_complexity 1 36 0 3 1143 939 219 53 10 chr12 73237233 73237440 -48020090 + B3 SINE B2 1 216 0 3 1143 306 280 82 33 chr12 73238130 73238252 -48019278 + MLT1A LTR MaLR 88 215 -159 3 1143 460 259 66 74 chr12 73238304 73238501 -48019029 + MLT1A LTR MaLR 196 374 0 3 1143 8175 52 4 3 chr12 73238757 73239752 -48017778 - L1Md_F2 LINE L1 0 6582 5587 3 1143 1114 75 0 0 chr12 73240193 73240327 -48017203 + B1_Mus1 SINE Alu 3 136 -12 3 1143 987 144 0 0 chr12 73240327 73240494 -48017036 + (GAA)n Simple_repeat Simple_repeat 3 169 0 3 1143 890 121 17 17 chr12 73241038 73241214 -48016316 + GA-rich Low_complexity Low_complexity 3 178 0 3 1143 252 323 76 15 chr12 73241554 73241686 -48015844 + MER2B DNA MER2_type 31 170 -166 3 1143 942 40 63 0 chr12 73242828 73242954 -48014576 + B1_Mm SINE Alu 13 146 -1 3 1143 537 93 14 48 chr12 73242954 73243100 -48014430 + (CAAA)n Simple_repeat Simple_repeat 1 141 0 3 1143 764 270 66 113 chr12 73243111 73243553 -48013977 + RLTR23 LTR ERV1 10 430 0 3 1143 325 295 154 56 chr12 73243732 73243998 -48013532 + L1M5 LINE L1 4731 5022 -1124 3 1143 794 239 110 43 chr12 73244207 73244508 -48013022 + L1MA7 LINE L1 5695 6015 -276 3 1143 21 0 0 0 chr12 73245054 73245075 -48012455 + AT_rich Low_complexity Low_complexity 1 21 0 3 1143 564 180 32 8 chr12 73245477 73245600 -48011930 + URR1B DNA MER1_type 83 208 -17 3 1143 275 333 195 4 chr12 73246003 73246280 -48011250 - L2a LINE L2 -21 3405 3076 3 1143 242 116 0 23 chr12 73246431 73246475 -48011055 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 3 1143 2334 176 8 5 chr12 73246571 73246948 -48010582 + ORR1C1 LTR MaLR 1 378 0 3 1143 511 222 15 0 chr12 73247037 73247172 -48010358 + L1_Rod LINE L1 3627 3763 -2117 3 1143 1694 168 46 94 chr12 73247172 73247325 -48010205 - MYSERV6-int LTR ERVK -624 8335 8174 3 1143 1429 17 6 11 chr12 73247325 73247506 -48010024 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1143 1694 168 46 94 chr12 73247506 73247699 -48009831 - MYSERV6-int LTR ERVK -786 8173 8006 3 1143 444 62 0 0 chr12 73247699 73247763 -48009767 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 3 1143 1055 82 0 140 chr12 73247763 73247934 -48009596 - B1_Mus1 SINE Alu -1 147 1 3 1143 1694 168 46 94 chr12 73247934 73247998 -48009532 - MYSERV6-int LTR ERVK -954 8005 7944 3 1143 350 167 226 0 chr12 73248028 73248130 -48009400 - Lx5 LINE L1 0 7050 6926 3 1143 963 45 0 0 chr12 73248123 73248235 -48009295 - L1Md_F2 LINE L1 -374 6208 6097 3 1143 3104 55 0 5 chr12 73248235 73248604 -48008926 + L1Md_F2 LINE L1 6204 6570 -12 3 1143 7276 150 28 25 chr12 73248633 73250447 -48007083 - Lx5 LINE L1 -108 6942 5128 3 1143 1160 137 52 0 chr12 73250442 73250654 -48006876 + L1_Mur2 LINE L1 1374 1596 -4281 3 1143 2140 180 10 0 chr12 73250651 73251159 -48006371 - L1_Mur2 LINE L1 -4475 1402 889 3 1143 1163 276 6 10 chr12 73251465 73251776 -48005754 - MYSERV6-int LTR ERVK -4661 4298 3989 3 1143 735 239 49 32 chr12 73253040 73253286 -48004244 - RLTR15 LTR ERVK -38 321 72 3 1143 252 0 0 0 chr12 73253291 73253319 -48004211 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1143 241 304 33 42 chr12 73253319 73253439 -48004091 - RLTR15 LTR ERVK -220 139 21 3 1143 1212 223 35 9 chr12 73253439 73253754 -48003776 + L1_Rod LINE L1 4180 4506 -1374 3 1143 4132 132 32 53 chr12 73253754 73254505 -48003025 + RMER6A LTR ERVK 20 754 -2 3 1143 2262 202 82 94 chr12 73254516 73255195 -48002335 + L1_Rod LINE L1 4489 5159 -688 3 1143 1189 83 0 0 chr12 73256985 73257130 -48000400 - B1_Mus1 SINE Alu -1 147 3 3 1143 23 33 0 0 chr12 73259073 73259103 -47998427 + AT_rich Low_complexity Low_complexity 1 30 0 3 1143 411 317 74 64 chr12 73259534 73259904 -47997626 + RLTR16 LTR ERVK 9 426 -266 3 1143 184 72 47 23 chr12 73261742 73261785 -47995745 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 3 1143 547 212 6 16 chr12 73261984 73262166 -47995364 + (TGG)n Simple_repeat Simple_repeat 1 180 0 3 1143 190 219 24 0 chr12 73262473 73262514 -47995016 + MER5A DNA MER1_type 26 67 -122 3 1143 26213 139 24 13 chr12 73262763 73268834 -47988696 + Lx2B LINE L1 865 6998 -2 3 1144 35121 94 6 15 chr12 73269258 73270827 -47986703 + L1Md_A LINE L1 441 1958 -3925 3 1144 342 0 0 0 chr12 73270827 73270865 -47986665 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1144 35121 51 5 1 chr12 73270865 73274475 -47983055 + L1Md_A LINE L1 1959 5585 -298 3 1144 9058 26 2 5 chr12 73274475 73275475 -47982055 + L1Md_F3 LINE L1 5587 6583 -1 3 1144 775 202 12 15 chr12 73276561 73276746 -47980784 + MTC LTR MaLR 197 421 0 3 1144 228 362 0 0 chr12 73276759 73276839 -47980691 - LTR41B LTR ERVL -678 80 1 3 1144 230 261 75 11 chr12 73277310 73277403 -47980127 + L1MB3 LINE L1 4943 5041 -1105 3 1144 1418 157 78 8 chr12 73277604 73277861 -47979669 - ORR1A3 LTR MaLR -23 303 29 3 1144 763 215 21 0 chr12 73277872 73278016 -47979514 - B3A SINE B2 -51 147 1 4 1144 581 275 82 29 chr12 73278029 73278310 -47979220 + L1MB3 LINE L1 5060 5355 -785 3 1144 1293 264 131 20 chr12 73278348 73278826 -47978704 + L1MB3 LINE L1 5372 5899 -284 3 1144 2175 95 11 77 chr12 73278826 73279178 -47978352 + ORR1A4 LTR MaLR 1 329 0 4 1144 1293 264 131 20 chr12 73279178 73279243 -47978287 + L1MB3 LINE L1 5900 5975 -208 3 1144 501 304 104 10 chr12 73280000 73280193 -47977337 - B3 SINE B2 -5 211 1 4 1144 244 269 57 9 chr12 73280456 73280561 -47976969 + L1ME4a LINE L1 5993 6102 -22 4 1144 1219 48 0 0 chr12 73281379 73281526 -47976004 - B1_Mm SINE Alu 0 147 1 4 1144 357 82 0 0 chr12 73282003 73282052 -47975478 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1144 432 0 0 0 chr12 73282244 73282292 -47975238 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1144 414 0 0 0 chr12 73282292 73282337 -47975193 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1144 360 0 0 0 chr12 73282337 73282377 -47975153 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1144 232 344 31 0 chr12 73282753 73282849 -47974681 - BC1_Mm scRNA scRNA -53 99 1 4 1144 5565 85 3 16 chr12 73282888 73283663 -47973867 + L1_Mus4 LINE L1 5871 6635 -1 4 1144 346 236 0 43 chr12 73284093 73284186 -47973344 - ID_B1 SINE B4 -28 196 108 4 1144 361 253 58 0 chr12 73284241 73284328 -47973202 + Lx8 LINE L1 7031 7122 -351 4 1144 584 319 53 75 chr12 73284968 73285327 -47972203 - ORR1E LTR MaLR 0 359 9 4 1144 276 203 45 40 chr12 73286231 73286347 -47971183 - MIRm SINE MIR -69 199 81 4 1144 296 389 69 7 chr12 73286865 73287010 -47970520 + LTR33A LTR ERVL 11 164 -356 4 1144 3077 28 33 0 chr12 73287419 73287778 -47969752 - L1Md_F2 LINE L1 -12 6570 6200 4 1144 6872 55 1 5 chr12 73287864 73288710 -47968820 + L1_Mus1 LINE L1 5733 6567 0 4 1144 426 39 0 0 chr12 73288966 73289018 -47968512 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1144 915 294 17 31 chr12 73289028 73289319 -47968211 - B4A SINE B4 -4 288 2 4 1144 221 236 55 14 chr12 73289438 73289511 -47968019 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 4 1144 254 307 42 21 chr12 73289883 73290026 -47967504 + L1MA10 LINE L1 6178 6323 -11 4 1144 225 275 134 24 chr12 73290272 73290436 -47967094 - ORR1E LTR MaLR -167 192 11 4 1144 10396 138 31 14 chr12 73290525 73290741 -47966789 + Lx5 LINE L1 4083 4293 -1584 4 1144 2135 117 31 6 chr12 73290741 73291060 -47966470 + ORR1A2 LTR MaLR 1 327 0 4 1144 10396 161 52 35 chr12 73291060 73293746 -47963784 + Lx5 LINE L1 4294 7001 -49 4 1144 708 289 173 0 chr12 73293997 73294246 -47963284 + B4 SINE B4 1 292 0 4 1144 1261 230 58 97 chr12 73296014 73296642 -47960888 + RMER12 LTR ERVK 1 593 -1255 4 1144 638 58 0 11 chr12 73296642 73296730 -47960800 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 4 1144 1251 247 84 163 chr12 73296730 73296745 -47960785 + RMER12 LTR ERVK 594 594 -1254 4 1144 1232 54 0 0 chr12 73296745 73296892 -47960638 - B1_Mus2 SINE Alu 0 147 1 4 1144 1251 247 84 163 chr12 73296892 73297108 -47960422 + RMER12 LTR ERVK 594 793 -1055 4 1144 561 246 94 11 chr12 73297238 73297419 -47960111 + RMER12 LTR ERVK 1100 1295 -27 4 1144 1267 108 5 26 chr12 73298195 73298386 -47959144 - B2_Mm2 SINE B2 -8 187 1 4 1144 22 56 0 0 chr12 73298388 73298424 -47959106 + AT_rich Low_complexity Low_complexity 1 36 0 4 1144 286 307 11 0 chr12 73299489 73299577 -47957953 - B4A SINE B4 -18 274 186 4 1144 482 76 0 0 chr12 73299581 73299647 -47957883 + RMER17A LTR ERVK 1 66 -685 4 1144 2639 87 20 16 chr12 73299645 73300090 -47957440 + RMER17A LTR ERVK 302 748 -3 4 1144 464 244 39 4 chr12 73300102 73300218 -47957312 - B4 SINE B4 -132 160 40 4 1144 689 266 71 45 chr12 73300218 73300486 -47957044 - MT2A LTR ERVL 0 533 259 4 1144 324 233 37 37 chr12 73300492 73300599 -47956931 + HAL1-2a_MD LINE L1 2386 2492 -532 4 1144 559 202 0 84 chr12 73300606 73300784 -47956746 + HAL1-2a_MD LINE L1 2345 2507 -517 4 1144 649 168 12 42 chr12 73300786 73300954 -47956576 + HAL1-2a_MD LINE L1 2345 2507 -517 4 1144 313 279 7 68 chr12 73301084 73301230 -47956300 - MT2A LTR ERVL -352 181 45 4 1144 611 168 206 0 chr12 73301414 73301545 -47955985 - MTC LTR MaLR 0 421 264 4 1144 226 128 26 0 chr12 73301543 73301582 -47955948 - MTC LTR MaLR -381 40 1 4 1144 316 135 212 4 chr12 73301593 73301670 -47955860 + PB1D7 SINE Alu 5 92 -28 4 1144 1160 47 0 33 chr12 73302334 73302487 -47955043 + B1_Mus1 SINE Alu 1 148 0 4 1144 187 31 0 59 chr12 73302490 73302524 -47955006 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1144 555 16 0 0 chr12 73302524 73302588 -47954942 + (CAAAC)n Simple_repeat Simple_repeat 2 65 0 4 1144 180 97 0 0 chr12 73302928 73302959 -47954571 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 4 1144 1504 138 0 13 chr12 73303374 73303601 -47953929 - URR1B DNA MER1_type 0 225 2 4 1144 36174 35 0 0 chr12 73303972 73309296 -47948234 + L1Md_T LINE L1 169 5589 -297 4 1144 9140 4 2 0 chr12 73309296 73310290 -47947240 + L1Md_T LINE L1 5590 6585 0 4 1144 324 0 0 0 chr12 73311083 73311119 -47946411 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1144 547 254 88 21 chr12 73312059 73312252 -47945278 + ID_B1 SINE B4 2 207 -17 4 1144 216 97 0 0 chr12 73313244 73313275 -47944255 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 4 1144 663 297 23 9 chr12 73314080 73314294 -47943236 - B4 SINE B4 -6 286 70 4 1144 187 314 179 35 chr12 73314609 73314810 -47942720 - L2a LINE L2 -165 3261 3032 4 1144 188 335 97 48 chr12 73314892 73315099 -47942431 - L2a LINE L2 -526 2893 2677 4 1144 268 284 12 24 chr12 73315481 73315564 -47941966 + L4 LINE RTE 1771 1852 -177 4 1144 183 405 0 0 chr12 73316391 73316465 -47941065 - MER5A DNA MER1_type -28 161 88 4 1144 420 20 0 0 chr12 73316696 73316745 -47940785 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1144 315 0 0 0 chr12 73316745 73316779 -47940751 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1144 180 0 0 0 chr12 73318795 73318815 -47938715 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1144 327 325 70 100 chr12 73318827 73319097 -47938433 + MER58B DNA MER1_type 80 341 0 4 1144 1055 147 178 0 chr12 73319438 73319629 -47937901 + URR1B DNA MER1_type 1 225 0 4 1144 573 161 0 0 chr12 73319667 73319797 -47937733 + (TG)n Simple_repeat Simple_repeat 1 130 0 4 1144 268 280 34 52 chr12 73319983 73320122 -47937408 + MIRc SINE MIR 47 183 -25 4 1144 241 359 138 46 chr12 73321141 73321468 -47936062 + MLT1A LTR MaLR 2 358 -16 4 1144 3030 47 49 16 chr12 73321468 73321855 -47935675 + MTB LTR MaLR 1 400 0 4 1144 273 296 11 0 chr12 73323698 73323786 -47933744 + MIRc SINE MIR 96 184 -84 4 1144 221 0 0 33 chr12 73323825 73323855 -47933675 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1144 608 216 9 0 chr12 73323863 73323979 -47933551 + B3 SINE B2 7 123 -93 4 1144 29 28 0 0 chr12 73324032 73324068 -47933462 + AT_rich Low_complexity Low_complexity 1 36 0 4 1144 227 286 12 61 chr12 73325084 73325166 -47932364 - ID4_ SINE ID -4 79 2 4 1144 1493 192 24 3 chr12 73325239 73325526 -47932004 + ORR1D1 LTR MaLR 1 293 -81 4 1144 195 100 0 0 chr12 73326295 73326325 -47931205 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1144 504 0 0 0 chr12 73329656 73329712 -47927818 + (CAAAC)n Simple_repeat Simple_repeat 2 57 0 4 1144 378 238 0 0 chr12 73330023 73330103 -47927427 - ID_B1 SINE B4 -26 198 119 4 1144 318 201 78 64 chr12 73330103 73330126 -47927404 - B1_Mus1 SINE Alu -21 93 1 4 1144 437 266 18 0 chr12 73331517 73331626 -47925904 - B1F SINE Alu -38 111 1 4 1144 1035 58 0 0 chr12 73331842 73331981 -47925549 + (TG)n Simple_repeat Simple_repeat 1 139 0 4 1144 29 28 0 0 chr12 73332410 73332446 -47925084 + AT_rich Low_complexity Low_complexity 1 36 0 4 1144 754 169 62 0 chr12 73332537 73332667 -47924863 + B1_Mur3 SINE Alu 1 138 -11 4 1144 251 333 0 0 chr12 73332798 73332882 -47924648 + HAL1b LINE L1 1858 1941 -68 4 1144 1015 261 43 21 chr12 73333293 73333575 -47923955 - B4 SINE B4 -2 290 3 4 1144 249 33 0 0 chr12 73334780 73334810 -47922720 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1144 218 283 175 9 chr12 73334810 73334924 -47922606 - ID_B1 SINE B4 -11 213 81 4 1144 290 289 11 32 chr12 73335427 73335520 -47922010 + MER5B DNA MER1_type 87 177 -1 4 1144 21 57 0 0 chr12 73337691 73337726 -47919804 + GC_rich Low_complexity Low_complexity 1 35 0 4 1144 265 263 4 16 chr12 73340710 73340783 -47916747 - L2a LINE L2 0 3426 3302 4 1144 305 215 89 0 chr12 73341009 73341088 -47916442 + PB1D10 SINE Alu 27 112 -5 4 1144 253 68 22 22 chr12 73341112 73341157 -47916373 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 4 1144 316 67 31 62 chr12 73342838 73342902 -47914628 + (CCCTAA)n Simple_repeat Simple_repeat 2 63 0 4 1144 611 26 13 0 chr12 73342967 73343044 -47914486 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 1144 245 137 39 0 chr12 73343048 73343099 -47914431 + (CCCTAA)n Simple_repeat Simple_repeat 2 54 0 4 1144 1239 306 22 3 chr12 73343099 73343460 -47914070 - Lx8 LINE L1 -742 6731 6364 4 1144 22 35 0 0 chr12 73343461 73343490 -47914040 + AT_rich Low_complexity Low_complexity 1 29 0 4 1144 420 20 0 0 chr12 73343490 73343539 -47913991 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1144 414 317 102 44 chr12 73343539 73343833 -47913697 + Lx8 LINE L1 7084 7394 -79 4 1144 230 264 68 27 chr12 73343870 73343944 -47913586 + B3A SINE B2 1 77 -121 4 1144 21 0 0 0 chr12 73344592 73344613 -47912917 + AT_rich Low_complexity Low_complexity 1 21 0 4 1144 538 239 259 9 chr12 73344663 73344895 -47912635 - B4 SINE B4 0 292 3 4 1144 252 222 0 0 chr12 73345290 73345344 -47912186 + CT-rich Low_complexity Low_complexity 3 56 0 4 1144 349 327 69 40 chr12 73345803 73346036 -47911494 - L1MEe LINE L1 -2878 4359 4127 4 1144 580 236 113 17 chr12 73346036 73346213 -47911317 + B3A SINE B2 3 196 -2 4 1144 349 327 69 40 chr12 73346213 73346499 -47911031 - L1MEe LINE L1 -3111 4126 3826 4 1144 279 325 57 0 chr12 73346669 73346792 -47910738 - L1MEe LINE L1 -3651 3586 3457 4 1144 635 236 121 0 chr12 73347100 73347124 -47910406 - B3A SINE B2 -3 195 172 4 1144 378 0 0 0 chr12 73347124 73347166 -47910364 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1144 635 236 121 0 chr12 73347166 73347315 -47910215 - B3A SINE B2 -27 171 2 4 1144 339 275 112 18 chr12 73347649 73347836 -47909694 - L1MEe LINE L1 -4485 2772 2517 4 1144 667 231 28 3 chr12 73347836 73348002 -47909528 + B3 SINE B2 41 211 -5 4 1144 180 0 0 0 chr12 73348144 73348164 -47909366 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 5 1144 883 290 80 40 chr12 73348261 73348588 -47908942 + MTE2b LTR MaLR 1 340 -39 5 1144 279 71 0 0 chr12 73348968 73349010 -47908520 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1144 263 270 83 50 chr12 73349078 73349199 -47908331 - L1MEe LINE L1 -5513 722 598 4 1144 275 233 0 0 chr12 73349207 73349267 -47908263 - ID_B1 SINE B4 -5 219 160 5 1144 694 203 25 48 chr12 73349275 73349566 -47907964 - ORR1B1 LTR MaLR 0 394 32 5 1144 1620 174 125 3 chr12 73349860 73350188 -47907342 - ORR1D2 LTR MaLR -2 368 1 5 1144 636 251 66 33 chr12 73350438 73350703 -47906827 + RLTR19 LTR ERVK 228 506 0 5 1144 242 290 118 0 chr12 73351157 73351250 -47906280 + L1MC1 LINE L1 65 168 -6340 5 1144 1555 290 114 34 chr12 73351251 73351362 -47906168 + L1MC1 LINE L1 5451 5553 -955 5 1144 243 0 0 0 chr12 73351362 73351389 -47906141 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1144 1555 290 114 34 chr12 73351389 73352208 -47905322 + L1MC1 LINE L1 5554 6460 -48 5 1144 372 22 0 0 chr12 73352208 73352253 -47905277 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1144 1555 290 114 34 chr12 73352253 73352293 -47905237 + L1MC1 LINE L1 6461 6498 -10 5 1144 583 299 69 62 chr12 73352293 73352582 -47904948 + B4 SINE B4 2 292 0 5 1144 502 269 206 24 chr12 73352982 73353422 -47904108 + L1MB7 LINE L1 5302 5810 -369 5 1144 281 299 89 19 chr12 73353832 73353989 -47903541 + L1MB7 LINE L1 5997 6164 -20 5 1144 641 276 27 32 chr12 73354922 73355143 -47902387 - L1MA4 LINE L1 -299 6001 5782 5 1144 475 123 45 45 chr12 73355143 73355321 -47902209 + (TA)n Simple_repeat Simple_repeat 1 178 0 5 1144 554 300 64 67 chr12 73355326 73355672 -47901858 - L1MA4 LINE L1 -512 5788 5444 5 1144 552 310 82 4 chr12 73355775 73356018 -47901512 + MER74B LTR ERVL 265 526 -96 5 1144 280 293 81 22 chr12 73356152 73356288 -47901242 + MTD LTR MaLR 1 144 -215 5 1144 281 225 73 24 chr12 73356285 73356367 -47901163 + MTD LTR MaLR 300 385 -34 5 1144 575 259 142 96 chr12 73358866 73358990 -47898540 + B4 SINE B4 2 132 -160 5 1144 2602 126 58 33 chr12 73358990 73359440 -47898090 - RMER6B LTR ERVK 0 461 1 5 1144 575 259 142 96 chr12 73359440 73359576 -47897954 + B4 SINE B4 133 274 -18 5 1144 536 261 65 22 chr12 73360191 73360375 -47897155 - ORR1E LTR MaLR -167 192 1 5 1144 396 0 0 0 chr12 73360444 73360488 -47897042 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1144 288 0 0 0 chr12 73360488 73360519 -47897011 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1144 1209 55 0 0 chr12 73361002 73361148 -47896382 - B1_Mus2 SINE Alu 0 147 2 5 1144 210 37 0 0 chr12 73361153 73361180 -47896350 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1144 198 0 0 0 chr12 73361332 73361354 -47896176 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1144 289 130 52 0 chr12 73361356 73361433 -47896097 + (CAGA)n Simple_repeat Simple_repeat 2 82 0 5 1144 308 379 51 4 chr12 73361710 73361904 -47895626 - MIRm SINE MIR -21 241 42 5 1144 425 148 0 12 chr12 73361941 73362023 -47895507 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1144 289 308 42 8 chr12 73362222 73362340 -47895190 - B4A SINE B4 -49 243 122 5 1144 1954 143 112 6 chr12 73362344 73362674 -47894856 + ORR1B2 LTR MaLR 3 367 0 5 1144 432 0 0 0 chr12 73362997 73363045 -47894485 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 5 1144 817 268 21 0 chr12 73363050 73363240 -47894290 - ID_B1 SINE B4 -26 198 5 5 1144 5880 14 0 0 chr12 73363334 73363975 -47893555 + MERVL-int LTR ERVL 2399 3039 -2446 5 1144 198 0 0 0 chr12 73366010 73366032 -47891498 + (CAGG)n Simple_repeat Simple_repeat 2 23 0 5 1144 539 15 0 14 chr12 73366034 73366103 -47891427 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 5 1144 560 324 0 56 chr12 73366123 73366283 -47891247 + RSINE1 SINE B4 3 153 -12 5 1144 551 53 13 0 chr12 73366701 73366776 -47890754 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 1144 398 348 6 18 chr12 73367067 73367231 -47890299 - RSINE1 SINE B4 -1 164 3 5 1144 2288 216 49 57 chr12 73367447 73368062 -47889468 + RMER19C LTR ERVK 1 610 -1 5 1144 260 284 64 0 chr12 73368392 73368501 -47889029 - PB1D10 SINE Alu 0 117 2 5 1144 1016 134 105 30 chr12 73368685 73368885 -47888645 + B3 SINE B2 1 215 -1 5 1144 31 44 0 0 chr12 73369545 73369590 -47887940 + AT_rich Low_complexity Low_complexity 1 45 0 5 1144 361 192 30 0 chr12 73370131 73370230 -47887300 + CT-rich Low_complexity Low_complexity 1 102 0 5 1144 290 220 0 35 chr12 73370228 73370313 -47887217 + (CACCAT)n Simple_repeat Simple_repeat 3 84 0 5 1144 486 292 99 5 chr12 73371104 73371317 -47886213 - B4A SINE B4 0 292 60 5 1144 3550 20 2 0 chr12 73371522 73371917 -47885613 - MTA_Mm LTR MaLR 0 396 1 5 1144 9350 33 2 1 chr12 73371918 73373014 -47884516 - MTA_Mm-int LTR MaLR -1 1097 1 5 1144 3550 20 2 0 chr12 73373014 73373409 -47884121 - MTA_Mm LTR MaLR 0 396 1 5 1144 225 325 32 16 chr12 73373425 73373550 -47883980 - HAL1 LINE L1 -874 1633 1507 5 1144 203 196 65 0 chr12 73373903 73373949 -47883581 - MER5B DNA MER1_type -127 51 3 5 1144 735 283 96 10 chr12 73374631 73374934 -47882596 + MLT1A0 LTR MaLR 11 339 -26 5 1144 1176 74 0 22 chr12 73375442 73375622 -47881908 + (TTCTC)n Simple_repeat Simple_repeat 2 177 0 5 1144 593 39 16 16 chr12 73375625 73375754 -47881776 + (TTTC)n Simple_repeat Simple_repeat 1 129 0 5 1144 365 247 183 93 chr12 73375770 73376060 -47881470 - Lx7 LINE L1 -16 7680 7365 5 1144 709 299 32 97 chr12 73376275 73376449 -47881081 + B4 SINE B4 1 162 -130 5 1144 2605 123 6 0 chr12 73376449 73376814 -47880716 + ORR1B2 LTR MaLR 1 367 0 5 1144 709 299 32 97 chr12 73376814 73376877 -47880653 + B4 SINE B4 163 224 -68 5 1144 681 154 131 0 chr12 73376877 73377007 -47880523 + B1_Mur1 SINE Alu 2 148 -1 5 1144 709 299 32 97 chr12 73377007 73377079 -47880451 + B4 SINE B4 225 290 -2 5 1144 428 35 0 17 chr12 73377113 73377172 -47880358 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1144 183 139 0 0 chr12 73378652 73378688 -47878842 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1144 24 32 0 0 chr12 73378798 73378829 -47878701 + AT_rich Low_complexity Low_complexity 1 31 0 5 1144 279 239 30 0 chr12 73379016 73379083 -47878447 + GA-rich Low_complexity Low_complexity 4 72 0 5 1144 22 0 0 0 chr12 73379317 73379339 -47878191 + AT_rich Low_complexity Low_complexity 1 22 0 5 1144 220 225 38 0 chr12 73379430 73379510 -47878020 + A-rich Low_complexity Low_complexity 3 85 0 5 1144 498 262 81 34 chr12 73379526 73379735 -47877795 - Lx7 LINE L1 -363 7333 7115 5 1144 608 286 22 58 chr12 73380925 73381130 -47876400 + ID_B1 SINE B4 9 211 -13 5 1144 204 40 0 0 chr12 73381130 73381155 -47876375 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1144 603 0 0 0 chr12 73381162 73381229 -47876301 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 5 1144 238 258 16 0 chr12 73381708 73381770 -47875760 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1144 421 299 23 28 chr12 73381814 73382026 -47875504 - B4 SINE B4 -49 243 43 5 1144 245 338 0 0 chr12 73382210 73382284 -47875246 - tRNA-Ala-GCY_ tRNA tRNA -1 74 1 5 1144 275 278 37 142 chr12 73382315 73382449 -47875081 - PB1 SINE Alu -7 120 1 5 1144 852 275 120 85 chr12 73382798 73383766 -47873764 + L1MB7 LINE L1 5187 6176 -8 5 1144 1470 186 18 4 chr12 73384030 73384311 -47873219 + RLTR14 LTR ERV1 1 285 -97 5 1144 203 312 87 34 chr12 73386153 73386302 -47871228 + L2b LINE L2 3213 3369 -6 5 1144 211 289 19 0 chr12 73389068 73389120 -47868410 - MIRb SINE MIR -180 88 36 5 1144 390 279 74 10 chr12 73389902 73390038 -47867492 - MTD LTR MaLR -14 405 233 5 1144 24 0 0 0 chr12 73390615 73390639 -47866891 + AT_rich Low_complexity Low_complexity 1 24 0 5 1144 528 284 61 0 chr12 73391619 73391767 -47865763 + MTE2b LTR MaLR 121 277 -102 5 1144 453 19 0 0 chr12 73392485 73392539 -47864991 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1144 5557 78 2 5 chr12 73392774 73393587 -47863943 + RLTR22_Mus LTR ERVK 1 811 -997 5 1144 1145 97 6 6 chr12 73393812 73393989 -47863541 + RLTR22_Mur LTR ERVK 1591 1767 -81 5 1144 688 103 43 0 chr12 73393990 73394107 -47863423 + L1_Mus4 LINE L1 6509 6630 -6 5 1144 207 204 0 0 chr12 73394112 73394156 -47863374 + A-rich Low_complexity Low_complexity 1 44 0 5 1144 435 150 0 169 chr12 73394158 73394294 -47863236 - MTC-int LTR MaLR -175 1083 971 5 1144 811 229 146 67 chr12 73394290 73394632 -47862898 + MTD-int LTR MaLR 715 1083 -175 5 1144 216 200 0 0 chr12 73394634 73394679 -47862851 + T-rich Low_complexity Low_complexity 1 45 0 5 1144 7801 83 21 1 chr12 73394684 73396306 -47861224 - L1_Mus3 LINE L1 -6 6632 4977 5 1144 866 139 0 0 chr12 73396300 73396437 -47861093 + L1_Mus3 LINE L1 4838 4974 -909 5 1144 677 188 11 47 chr12 73396437 73396627 -47860903 + MTD-int LTR MaLR 1076 1258 0 5 1144 1356 223 102 19 chr12 73396627 73396988 -47860542 + MTD LTR MaLR 1 391 -28 5 1144 222 91 0 0 chr12 73396988 73397021 -47860509 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 5 1144 279 0 0 0 chr12 73397343 73397374 -47860156 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1144 588 301 134 48 chr12 73398985 73399379 -47858151 + MT2A LTR ERVL 25 452 -81 5 1145 450 0 0 0 chr12 73400577 73400627 -47856903 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1145 375 215 25 0 chr12 73400731 73400810 -47856720 - ID4 SINE ID -1 82 2 5 1145 294 274 34 0 chr12 73401298 73401426 -47856104 + B1F SINE Alu 22 148 -1 5 1145 495 247 118 47 chr12 73401558 73401579 -47855951 - B3A SINE B2 -16 182 167 5 1145 459 78 0 0 chr12 73401579 73401643 -47855887 + (TATG)n Simple_repeat Simple_repeat 2 65 0 5 1145 495 247 118 47 chr12 73401643 73401791 -47855739 - B3A SINE B2 -32 166 1 5 1145 318 106 0 0 chr12 73401823 73401870 -47855660 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1145 1224 27 0 13 chr12 73403638 73403787 -47853743 + B1_Mus2 SINE Alu 1 147 0 5 1145 219 186 0 0 chr12 73403787 73403830 -47853700 + A-rich Low_complexity Low_complexity 1 43 0 5 1145 201 246 0 0 chr12 73405415 73405472 -47852058 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 5 1145 207 0 0 0 chr12 73406002 73406025 -47851505 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 5 1145 337 221 247 11 chr12 73406953 73407127 -47850403 + Lx9 LINE L1 7427 7641 -3 5 1145 277 301 32 0 chr12 73407982 73408075 -47849455 + L1MB7 LINE L1 4925 5020 -1126 5 1145 718 251 90 45 chr12 73408070 73408358 -47849172 + L1MB7 LINE L1 5725 6025 -159 5 1145 288 297 168 76 chr12 73408373 73408570 -47848960 - B4A SINE B4 -76 216 2 5 1145 1017 276 131 6 chr12 73408739 73409074 -47848456 + Lx9 LINE L1 6475 6851 -793 6 1145 602 266 0 0 chr12 73410553 73410681 -47846849 + RSINE1 SINE B4 2 129 -36 6 1145 296 164 0 15 chr12 73410718 73410786 -47846744 + (TTA)n Simple_repeat Simple_repeat 3 69 0 6 1145 480 77 0 0 chr12 73410975 73411040 -47846490 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1145 633 106 0 0 chr12 73411590 73411703 -47845827 + (TC)n Simple_repeat Simple_repeat 1 113 0 6 1145 21 0 0 0 chr12 73412317 73412338 -47845192 + AT_rich Low_complexity Low_complexity 1 21 0 6 1145 210 37 0 0 chr12 73412501 73412528 -47845002 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1145 272 152 43 0 chr12 73412578 73412624 -47844906 + Ricksha_a DNA MuDR 169 216 -965 6 1145 342 268 23 30 chr12 73412787 73412918 -47844612 + Ricksha_a DNA MuDR 393 522 -659 6 1145 680 228 126 76 chr12 73412948 73413304 -47844226 - Lx9 LINE L1 -22 7622 7249 6 1145 1860 274 57 47 chr12 73413349 73414014 -47843516 - Lx9 LINE L1 -509 7135 6464 6 1145 895 279 27 25 chr12 73414114 73414452 -47843078 - Lx9 LINE L1 -1702 5942 5558 6 1145 2727 214 77 7 chr12 73414481 73415144 -47842386 + Lx7 LINE L1 6265 7018 -455 6 1145 2132 94 3 59 chr12 73415165 73415503 -47842027 - ORR1A2 LTR MaLR -8 319 1 6 1145 2434 198 153 35 chr12 73415503 73416109 -47841421 + Lx7 LINE L1 7019 7696 0 6 1145 21 36 0 0 chr12 73416259 73416287 -47841243 + AT_rich Low_complexity Low_complexity 1 28 0 6 1145 180 0 0 0 chr12 73416604 73416624 -47840906 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1145 204 250 19 0 chr12 73417048 73417100 -47840430 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 6 1145 510 86 0 0 chr12 73417773 73417854 -47839676 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1145 348 24 0 0 chr12 73417854 73417895 -47839635 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1145 342 299 74 55 chr12 73418123 73418325 -47839205 + MIR SINE MIR 44 249 -13 6 1145 240 156 0 0 chr12 73420231 73420242 -47837288 + (CATATA)n Simple_repeat Simple_repeat 4 14 0 6 1145 279 0 0 0 chr12 73420242 73420273 -47837257 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1145 240 156 0 0 chr12 73420273 73420306 -47837224 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 6 1145 1092 82 13 20 chr12 73420331 73420480 -47837050 + B1_Mus1 SINE Alu 1 148 0 6 1145 678 25 0 0 chr12 73420524 73420604 -47836926 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 6 1145 1545 271 42 42 chr12 73420821 73421486 -47836044 + Lx9 LINE L1 6769 7469 -175 6 1145 459 0 0 0 chr12 73421500 73421551 -47835979 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1145 239 301 41 0 chr12 73422760 73422833 -47834697 + ID4 SINE ID 7 82 -1 6 1145 221 229 37 22 chr12 73422868 73423002 -47834528 + (TA)n Simple_repeat Simple_repeat 1 136 0 6 1145 408 139 0 0 chr12 73423760 73423839 -47833691 + (T)n Simple_repeat Simple_repeat 1 79 0 6 1145 1202 54 0 0 chr12 73423840 73423987 -47833543 - B1_Mus2 SINE Alu 0 147 1 6 1145 242 306 95 80 chr12 73424047 73424321 -47833209 - B4A SINE B4 -13 279 2 6 1145 262 341 23 0 chr12 73424544 73424632 -47832898 - PB1D10 SINE Alu -26 91 2 6 1145 21 0 0 0 chr12 73425186 73425207 -47832323 + AT_rich Low_complexity Low_complexity 1 21 0 6 1145 479 303 71 82 chr12 73426105 73426509 -47831021 + MTE2a LTR MaLR 18 405 -14 6 1145 351 0 0 0 chr12 73426768 73426807 -47830723 + (TGG)n Simple_repeat Simple_repeat 3 41 0 6 1145 231 157 19 38 chr12 73426807 73426860 -47830670 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1145 507 171 6 31 chr12 73426953 73427116 -47830414 + (CA)n Simple_repeat Simple_repeat 1 159 0 6 1145 615 232 163 26 chr12 73427314 73427504 -47830026 + B3 SINE B2 1 216 0 6 1145 344 282 8 57 chr12 73427572 73427696 -47829834 + B1_Mur1 SINE Alu 2 119 -30 6 1145 1117 152 133 11 chr12 73427654 73427933 -47829597 + RMER10A LTR ERVL 125 437 -5 6 1145 455 257 11 17 chr12 73427945 73428123 -47829407 + CT-rich Low_complexity Low_complexity 2 178 0 6 1145 292 235 39 0 chr12 73428129 73428231 -47829299 + C-rich Low_complexity Low_complexity 3 108 0 6 1145 739 20 30 10 chr12 73428233 73428333 -47829197 + (TTTCC)n Simple_repeat Simple_repeat 4 105 0 6 1145 3857 42 0 0 chr12 73432002 73432454 -47825076 + L1Md_T LINE L1 6131 6582 0 6 1145 270 0 0 0 chr12 73433762 73433792 -47823738 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 6 1145 1551 227 62 15 chr12 73434206 73434596 -47822934 + MTD LTR MaLR 12 419 0 6 1145 23 0 0 0 chr12 73435635 73435658 -47821872 + AT_rich Low_complexity Low_complexity 1 23 0 6 1145 414 190 30 10 chr12 73435834 73435935 -47821595 + MTEa LTR MaLR 276 378 -1 6 1145 1254 155 23 9 chr12 73437532 73437753 -47819777 + Lx5 LINE L1 6808 7031 -19 6 1145 342 0 0 0 chr12 73437753 73437791 -47819739 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 6 1145 479 295 111 25 chr12 73437798 73438041 -47819489 + MLT1A0 LTR MaLR 73 336 -29 6 1145 252 0 0 0 chr12 73439510 73439538 -47817992 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1145 221 141 42 14 chr12 73439608 73439680 -47817850 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1145 288 200 83 0 chr12 73441352 73441412 -47816118 + B1F SINE Alu 70 134 -15 6 1145 482 254 101 107 chr12 73442472 73442789 -47814741 + ORR1E LTR MaLR 28 342 -17 6 1145 526 326 55 58 chr12 73443364 73443676 -47813854 - ORR1E LTR MaLR -45 314 4 6 1145 343 267 22 0 chr12 73443676 73443750 -47813780 - MTE-int LTR MaLR -50 1530 1455 6 1145 575 318 66 23 chr12 73443752 73444010 -47813520 - MTE-int LTR MaLR -469 1111 843 6 1145 342 264 28 9 chr12 73444634 73444741 -47812789 - PB1D9 SINE Alu -1 119 11 6 1145 6781 51 0 4 chr12 73445091 73445922 -47811608 + L1Md_F2 LINE L1 4759 5586 -297 6 1145 8686 27 2 0 chr12 73445923 73446916 -47810614 + L1Md_F2 LINE L1 5588 6582 0 6 1145 204 125 0 0 chr12 73447234 73447266 -47810264 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1145 549 0 0 0 chr12 73447268 73447329 -47810201 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 6 1145 904 114 22 15 chr12 73447329 73447463 -47810067 - B1_Mus1 SINE Alu -13 135 1 6 1145 574 22 31 52 chr12 73448126 73448223 -47809307 - L1Md_F2 LINE L1 0 6582 6488 6 1145 292 326 29 7 chr12 73449128 73449264 -47808266 + MLT1K LTR MaLR 457 595 0 6 1145 1973 179 11 16 chr12 73449602 73449970 -47807560 + RLTR30 LTR ERV1 14 379 0 6 1145 297 0 0 0 chr12 73450858 73450891 -47806639 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1145 543 282 12 31 chr12 73450904 73451065 -47806465 - B3A SINE B2 -38 160 3 6 1145 278 308 151 37 chr12 73451316 73451580 -47805950 + L2b LINE L2 3098 3387 0 6 1145 866 189 122 21 chr12 73452474 73452663 -47804867 + B3 SINE B2 1 208 -8 6 1145 3042 65 8 2 chr12 73452838 73453236 -47804294 + L1_Mus3 LINE L1 6233 6632 -6 6 1145 746 294 152 23 chr12 73453568 73453997 -47803533 - MLT1D LTR MaLR 0 505 22 6 1145 594 300 25 13 chr12 73454478 73454714 -47802816 + L1MCc LINE L1 30 268 -6155 6 1145 189 0 0 0 chr12 73454913 73454934 -47802596 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1145 365 346 68 11 chr12 73455163 73455353 -47802177 + L1MCc LINE L1 792 992 -5431 6 1145 344 252 171 81 chr12 73455407 73455705 -47801825 + L1MCc LINE L1 1098 1422 -5001 6 1145 515 277 49 43 chr12 73455837 73456022 -47801508 + B3 SINE B2 3 188 -28 6 1145 243 336 14 80 chr12 73456057 73456332 -47801198 + L1MCc LINE L1 1804 2060 -4977 6 1145 1382 157 9 0 chr12 73456775 73456998 -47800532 + URR1B DNA MER1_type 1 225 0 6 1145 548 286 0 28 chr12 73457158 73457302 -47800228 - B4A SINE B4 -17 275 136 6 1145 334 275 93 29 chr12 73459497 73459669 -47797861 - L1MC3 LINE L1 -21 7764 7582 6 1145 191 88 29 0 chr12 73459674 73459708 -47797822 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1145 347 256 145 15 chr12 73459716 73459847 -47797683 - B4A SINE B4 -5 287 140 6 1145 310 307 47 50 chr12 73459927 73460136 -47797394 - L1MC3 LINE L1 -304 7691 7303 6 1145 370 99 56 0 chr12 73461169 73461240 -47796290 + CT-rich Low_complexity Low_complexity 5 79 0 6 1145 381 43 0 0 chr12 73462592 73462639 -47794891 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1145 279 295 145 16 chr12 73463831 73463955 -47793575 + Lx8 LINE L1 7081 7220 -253 6 1145 216 0 0 0 chr12 73464019 73464043 -47793487 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1145 734 301 106 42 chr12 73464280 73464686 -47792844 + LTR40a LTR ERVL 88 519 0 6 1145 311 291 63 81 chr12 73465157 73465378 -47792152 - RMER15 LTR ERVL 0 575 359 6 1145 1560 227 40 16 chr12 73465491 73465871 -47791659 + MTD LTR MaLR 31 419 0 6 1145 576 0 0 0 chr12 73468018 73468082 -47789448 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1145 380 257 16 66 chr12 73468745 73468866 -47788664 - PB1D10 SINE Alu -2 115 1 6 1145 396 256 114 13 chr12 73469657 73469815 -47787715 + L1MA9 LINE L1 5918 6091 -221 6 1145 479 288 70 58 chr12 73469863 73470106 -47787424 + L1MA9 LINE L1 6067 6312 0 6 1145 2187 144 62 3 chr12 73470379 73470769 -47786761 + MTC LTR MaLR 1 413 -8 6 1145 270 0 0 0 chr12 73470917 73470947 -47786583 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1145 330 282 54 18 chr12 73470952 73471064 -47786466 - RSINE1 SINE B4 -28 137 22 6 1145 316 351 116 35 chr12 73471340 73471538 -47785992 - MER20 DNA MER1_type 0 219 6 6 1145 795 147 0 0 chr12 73471692 73471821 -47785709 - B1_Mus1 SINE Alu -6 142 14 6 1145 27 0 0 0 chr12 73471838 73471865 -47785665 + AT_rich Low_complexity Low_complexity 1 27 0 6 1145 600 231 117 12 chr12 73471869 73471882 -47785648 - B3 SINE B2 -37 179 168 6 1145 225 0 0 0 chr12 73471882 73471907 -47785623 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1145 600 231 117 12 chr12 73471907 73472055 -47785475 - B3 SINE B2 -49 167 1 6 1145 263 351 0 0 chr12 73472634 73472728 -47784802 + G-rich Low_complexity Low_complexity 1 94 0 6 1145 1372 229 104 109 chr12 73472736 73473350 -47784180 + RMER19C LTR ERVK 1 611 0 6 1145 192 77 0 0 chr12 73473996 73474022 -47783508 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 1145 186 326 47 27 chr12 73474049 73474213 -47783317 - L2a LINE L2 -181 3245 3075 6 1145 921 226 112 63 chr12 73474317 73474754 -47782776 + MT2A LTR ERVL 1 498 -35 7 1145 539 173 0 9 chr12 73474756 73474867 -47782663 + (CATA)n Simple_repeat Simple_repeat 2 111 0 7 1145 241 61 0 0 chr12 73474883 73474916 -47782614 + MLT2D LTR ERVL 528 560 0 7 1145 24 0 0 0 chr12 73476651 73476675 -47780855 + AT_rich Low_complexity Low_complexity 1 24 0 7 1145 921 292 45 23 chr12 73478342 73478714 -47778816 + MLT2B4 LTR ERVL 24 457 -99 7 1145 690 13 0 0 chr12 73478783 73478862 -47778668 + (TC)n Simple_repeat Simple_repeat 2 80 0 7 1145 216 0 0 0 chr12 73478862 73478885 -47778645 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1145 306 0 0 0 chr12 73478885 73478918 -47778612 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1145 630 311 68 42 chr12 73479621 73480284 -47777246 + L1ME2 LINE L1 4708 5392 -754 7 1145 225 250 17 0 chr12 73480326 73480397 -47777133 + ID4 SINE ID 26 97 -55 7 1145 402 316 50 38 chr12 73480408 73480907 -47776623 + L1ME2 LINE L1 5436 6029 -330 7 1145 299 281 21 0 chr12 73481017 73481113 -47776417 - L2a LINE L2 0 3426 3329 7 1145 232 215 154 0 chr12 73481713 73481778 -47775752 - B1_Mur2 SINE Alu -1 148 74 7 1145 27 0 0 0 chr12 73482366 73482393 -47775137 + AT_rich Low_complexity Low_complexity 1 27 0 7 1145 302 265 12 35 chr12 73482749 73482835 -47774695 - HAL1-3A_ME LINE L1 -797 2061 1978 7 1145 189 288 0 0 chr12 73482838 73482963 -47774567 + (TG)n Simple_repeat Simple_repeat 2 126 0 7 1145 748 274 93 8 chr12 73482964 73483232 -47774298 - B4A SINE B4 0 292 2 7 1145 291 71 0 0 chr12 73483550 73483592 -47773938 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 7 1145 673 268 180 3 chr12 73484271 73484593 -47772937 + Lx8 LINE L1 6743 7121 -352 7 1145 5237 217 68 4 chr12 73484721 73485918 -47771612 + Lx9 LINE L1 6369 7642 -2 7 1145 962 24 0 8 chr12 73486027 73486153 -47771377 + B1_Mm SINE Alu 23 147 0 7 1145 237 163 0 0 chr12 73486810 73486859 -47770671 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1145 462 287 35 62 chr12 73486875 73487136 -47770394 - B4 SINE B4 -20 272 35 7 1145 522 118 0 0 chr12 73488377 73488470 -47769060 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 7 1145 458 261 178 14 chr12 73488492 73488706 -47768824 + L1MB3 LINE L1 5934 6182 -1 7 1145 698 218 149 10 chr12 73489724 73489919 -47767611 + ID_B1 SINE B4 1 222 -2 7 1145 795 115 0 16 chr12 73491878 73492002 -47765528 + B1_Mur2 SINE Alu 27 148 -1 7 1145 549 279 0 41 chr12 73492067 73492213 -47765317 + ID_B1 SINE B4 82 221 -3 7 1145 491 203 84 0 chr12 73492240 73492345 -47765185 + B1_Mur4 SINE Alu 1 112 -8 7 1145 21 36 0 0 chr12 73492458 73492486 -47765044 + AT_rich Low_complexity Low_complexity 1 28 0 7 1145 2824 79 47 3 chr12 73492486 73492867 -47764663 - MTB LTR MaLR 0 400 3 7 1145 1998 150 101 12 chr12 73494938 73495073 -47762457 + ORR1B2 LTR MaLR 1 151 -216 7 1145 468 0 0 0 chr12 73495073 73495125 -47762405 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1145 1998 150 101 12 chr12 73495125 73495326 -47762204 + ORR1B2 LTR MaLR 152 365 -2 7 1145 334 293 32 30 chr12 73495639 73495798 -47761732 - MLT1A1 LTR MaLR -2 406 195 7 1145 240 293 24 0 chr12 73496141 73496223 -47761307 + MamRep434 DNA TcMar 44 127 -299 7 1145 554 272 78 62 chr12 73496358 73496664 -47760866 - L1MDa LINE L1 -6291 342 32 7 1145 1415 187 82 75 chr12 73497108 73497484 -47760046 + ORR1C2 LTR MaLR 1 379 -5 7 1145 248 118 0 56 chr12 73497772 73497844 -47759686 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 1145 663 13 0 0 chr12 73499187 73499263 -47758267 + (TA)n Simple_repeat Simple_repeat 1 76 0 7 1145 378 0 0 0 chr12 73499366 73499408 -47758122 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 7 1145 4335 65 11 9 chr12 73499439 73500000 -47757530 - L1Md_F2 LINE L1 -2 6580 6019 7 1145 3626 41 0 9 chr12 73500000 73500564 -47756966 - L1Md_F2 LINE L1 -564 6018 5460 1 1145 208 255 20 0 chr12 73501066 73501117 -47756413 + GA-rich Low_complexity Low_complexity 5 56 0 2 1145 424 311 62 74 chr12 73501509 73501818 -47755712 + L2 LINE L2 2402 2706 -713 3 1145 3676 211 48 14 chr12 73503479 73504288 -47753242 + Lx9 LINE L1 6637 7473 -171 4 1145 201 74 0 0 chr12 73504369 73504396 -47753134 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 1145 592 196 53 13 chr12 73504402 73504552 -47752978 + Lx9 LINE L1 7487 7642 -2 4 1145 1561 128 0 30 chr12 73505283 73505516 -47752014 + URR1A DNA MER1_type 1 226 0 6 1145 381 86 0 0 chr12 73505711 73505769 -47751761 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1145 747 33 0 0 chr12 73506289 73506379 -47751151 + (GA)n Simple_repeat Simple_repeat 1 90 0 8 1145 288 111 0 0 chr12 73506684 73506729 -47750801 + (CATA)n Simple_repeat Simple_repeat 4 48 0 9 1145 230 321 89 7 chr12 73507019 73507154 -47750376 + MLT1A0 LTR MaLR 170 315 -50 1 1145 207 0 0 0 chr12 73507246 73507269 -47750261 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1145 319 170 274 11 chr12 73507654 73507749 -47749781 + L1MA7 LINE L1 6128 6247 -44 1 1145 257 292 17 42 chr12 73507924 73508042 -47749488 + CT-rich Low_complexity Low_complexity 1 115 0 1 1145 189 107 0 0 chr12 73509729 73509757 -47747773 + (TCC)n Simple_repeat Simple_repeat 1 28 0 1 1145 21 36 0 0 chr12 73509757 73509785 -47747745 + GC_rich Low_complexity Low_complexity 1 28 0 1 1145 237 132 0 0 chr12 73510313 73510351 -47747179 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1145 337 240 82 8 chr12 73511078 73511200 -47746330 + L1MA10 LINE L1 6202 6332 -2 1 1145 229 273 0 0 chr12 73511687 73511753 -47745777 + ID4 SINE ID 4 69 -14 1 1145 344 272 71 36 chr12 73512712 73512880 -47744650 - L1MB8 LINE L1 -348 5830 5657 1 1145 973 304 55 18 chr12 73513216 73513671 -47743859 - L1MB8 LINE L1 -10 6168 5697 2 1145 495 216 24 0 chr12 73513653 73513778 -47743752 + Lx7 LINE L1 3026 3153 -2727 2 1145 1753 147 169 26 chr12 73514288 73514715 -47742815 + Lx7 LINE L1 3133 3620 -2260 2 1145 2203 177 64 15 chr12 73514715 73515196 -47742334 + RLTR16 LTR ERVK 1 505 0 2 1145 12031 150 46 36 chr12 73515236 73518061 -47739469 + Lx7 LINE L1 3660 6506 -1190 2 1145 437 221 0 28 chr12 73518091 73518207 -47739323 + Lx7 LINE L1 7522 7611 -85 2 1145 1173 163 0 5 chr12 73518207 73518411 -47739119 - ORR1B1 LTR MaLR 0 394 192 2 1145 1568 166 26 26 chr12 73518403 73518707 -47738823 - ORR1B2 LTR MaLR -40 327 24 2 1145 421 216 0 10 chr12 73518725 73518828 -47738702 + Lx6 LINE L1 7358 7459 -1 2 1145 688 226 57 31 chr12 73518836 73519028 -47738502 + B3A SINE B2 2 198 0 2 1145 333 266 52 21 chr12 73519501 73519597 -47737933 - L1MB8 LINE L1 -629 5545 5447 2 1145 672 236 230 23 chr12 73519598 73519892 -47737638 + MTEb LTR MaLR 2 356 -23 2 1145 776 237 45 98 chr12 73519927 73520409 -47737121 - L1MB8 LINE L1 -748 5436 5004 2 1145 659 191 7 21 chr12 73520514 73520658 -47736872 - RMER1C Other Other -2 1340 1199 2 1145 537 96 0 31 chr12 73520665 73520762 -47736768 + (GGGGA)n Simple_repeat Simple_repeat 4 97 0 2 1145 3201 240 55 28 chr12 73520762 73520781 -47736749 - RMER1C Other Other -122 1220 1203 2 1145 1340 62 6 0 chr12 73520781 73520960 -47736570 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1145 3201 240 55 28 chr12 73520960 73521443 -47736087 - RMER1C Other Other -140 1202 716 2 1145 7789 51 63 4 chr12 73521443 73522409 -47735121 - RLTR13D5 LTR ERVK 0 1023 1 3 1145 3201 253 66 23 chr12 73522409 73522760 -47734770 - RMER1C Other Other -627 715 242 2 1145 251 327 37 28 chr12 73522968 73523075 -47734455 - RMER1B Other Other -913 153 46 2 1145 612 27 0 0 chr12 73523076 73523150 -47734380 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1145 1170 207 18 0 chr12 73523164 73523391 -47734139 - RMER1B Other Other -226 840 610 3 1145 1873 222 33 5 chr12 73524453 73524847 -47732683 + MTD LTR MaLR 1 405 -14 3 1145 225 341 96 0 chr12 73525043 73525178 -47732352 + MIRb SINE MIR 82 229 -39 3 1145 520 327 68 72 chr12 73525328 73525621 -47731909 + B4A SINE B4 1 292 0 3 1145 921 258 123 7 chr12 73525673 73525973 -47731557 - ORR1E LTR MaLR 0 359 25 3 1145 470 312 64 64 chr12 73526117 73526350 -47731180 - B4A SINE B4 -59 233 1 3 1145 1034 260 61 18 chr12 73527125 73527454 -47730076 - MTE2b LTR MaLR -33 346 4 3 1145 291 327 37 9 chr12 73528358 73528466 -47729064 + MER81 DNA AcHobo 1 111 -3 4 1145 297 0 0 0 chr12 73529081 73529114 -47728416 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1145 213 314 176 0 chr12 73529118 73529220 -47728310 - MIR SINE MIR -139 129 10 4 1145 726 225 109 10 chr12 73529404 73529597 -47727933 - B3 SINE B2 -3 213 2 4 1145 1417 84 0 30 chr12 73529879 73530076 -47727454 + B2_Mm2 SINE B2 3 193 -2 4 1145 919 171 0 27 chr12 73530344 73530494 -47727036 + B1_Mur2 SINE Alu 3 148 -1 4 143 828 87 55 0 chr12 73531369 73531496 -47726034 + URR1B DNA MER1_type 90 223 -2 4 1146 378 221 120 54 chr12 73531496 73531534 -47725996 - CYRA11_Mm Unknown Y-chromosome -308 307 132 4 1146 226 190 52 0 chr12 73532277 73532335 -47725195 - MTEb LTR MaLR -3 376 316 4 1146 207 0 0 0 chr12 73532426 73532449 -47725081 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1146 469 238 19 0 chr12 73532455 73532560 -47724970 - MTEb LTR MaLR -249 130 24 4 1146 471 74 20 40 chr12 73532888 73532987 -47724543 + (TCTCTG)n Simple_repeat Simple_repeat 2 98 0 5 1146 317 313 108 21 chr12 73533336 73533623 -47723907 - MLT1C LTR MaLR -76 391 80 5 1146 286 293 40 72 chr12 73533629 73533754 -47723776 + B1F1 SINE Alu 24 144 -5 5 1146 273 57 0 0 chr12 73533949 73533984 -47723546 + (CAGAGA)n Simple_repeat Simple_repeat 4 38 0 5 1146 591 251 101 28 chr12 73534037 73534254 -47723276 - MT2A LTR ERVL -297 236 4 5 1146 350 298 22 22 chr12 73534634 73534768 -47722762 - MER58A DNA MER1_type -89 135 2 5 1146 23 0 0 0 chr12 73534937 73534960 -47722570 + GC_rich Low_complexity Low_complexity 1 23 0 5 1146 1032 336 124 25 chr12 73534999 73535570 -47721960 + MLT1A0-int LTR MaLR 1108 1735 0 5 1146 517 233 92 27 chr12 73535574 73535759 -47721771 + MLT1A0 LTR MaLR 5 201 -164 5 1146 264 365 0 0 chr12 73535974 73536081 -47721449 - L2b LINE L2 -31 3344 3238 5 1146 979 274 154 47 chr12 73536116 73536752 -47720778 + MER67C LTR ERV1 8 711 0 5 1146 320 287 148 49 chr12 73536790 73537156 -47720374 + L1ME5 LINE L1 5551 5952 -242 6 1146 478 318 24 0 chr12 73537242 73537368 -47720162 + RSINE1 SINE B4 37 165 0 6 1146 774 299 84 75 chr12 73537417 73537498 -47720032 + L1MA4 LINE L1 5143 5216 -631 6 1146 879 176 0 0 chr12 73537498 73537640 -47719890 + B1_Mur4 SINE Alu 2 143 -7 6 1146 1243 286 108 16 chr12 73537640 73538141 -47719389 + L1MA4 LINE L1 5217 5793 -507 6 1146 513 47 0 0 chr12 73538141 73538205 -47719325 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1146 1243 285 110 12 chr12 73538205 73538329 -47719201 + L1MA4 LINE L1 5794 5924 -376 6 1146 1230 177 95 49 chr12 73539361 73539687 -47717843 - Lx7 LINE L1 0 7696 7356 6 1146 217 109 21 21 chr12 73539688 73539735 -47717795 + (TAA)n Simple_repeat Simple_repeat 2 48 0 6 1146 1072 238 22 0 chr12 73539757 73539984 -47717546 - Lx7 LINE L1 -335 7361 7130 6 1146 382 185 152 0 chr12 73540285 73540377 -47717153 - MTD LTR MaLR -210 209 104 6 1146 568 292 73 24 chr12 73540359 73540515 -47717015 + B4 SINE B4 6 162 -130 6 1146 240 35 0 0 chr12 73540515 73540544 -47716986 + (CAGA)n Simple_repeat Simple_repeat 1 29 0 6 1146 568 292 73 24 chr12 73540544 73540633 -47716897 + B4 SINE B4 163 262 -30 6 1146 1298 217 48 75 chr12 73540796 73541169 -47716361 - MTD LTR MaLR 0 419 57 7 1146 333 89 29 15 chr12 73541411 73541479 -47716051 + (CAAA)n Simple_repeat Simple_repeat 1 69 0 7 1146 1099 71 43 0 chr12 73541671 73541811 -47715719 + B1_Mus2 SINE Alu 1 146 -1 7 1146 218 180 0 39 chr12 73541812 73541864 -47715666 + A-rich Low_complexity Low_complexity 4 53 0 7 1146 855 253 192 23 chr12 73541998 73542342 -47715188 + MTD LTR MaLR 2 403 -16 7 1146 448 278 135 18 chr12 73542358 73542640 -47714890 - MER33 DNA MER1_type -2 322 8 7 1146 21 0 0 0 chr12 73543607 73543628 -47713902 + AT_rich Low_complexity Low_complexity 1 21 0 7 1146 441 0 0 0 chr12 73544514 73544563 -47712967 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1146 1057 211 77 22 chr12 73544791 73545063 -47712467 + B4 SINE B4 2 288 -4 7 1146 368 323 118 59 chr12 73545655 73545925 -47711605 - B4A SINE B4 -6 286 1 7 1146 22 35 0 0 chr12 73546542 73546571 -47710959 + AT_rich Low_complexity Low_complexity 1 29 0 8 1146 365 0 0 22 chr12 73546574 73546620 -47710910 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1146 406 276 97 0 chr12 73546632 73546777 -47710753 - B3A SINE B2 -39 159 1 8 1146 417 188 0 0 chr12 73546846 73546931 -47710599 + GA-rich Low_complexity Low_complexity 3 87 0 8 1146 297 168 299 56 chr12 73547004 73547111 -47710419 - MT2A LTR ERVL 0 533 401 8 1146 1132 199 89 27 chr12 73547135 73547394 -47710136 - MT2A LTR ERVL -231 302 28 8 1146 206 23 93 0 chr12 73547500 73547543 -47709987 + (TTA)n Simple_repeat Simple_repeat 2 48 0 8 1146 283 200 192 40 chr12 73547565 73547664 -47709866 - ORR1D2 LTR MaLR -240 130 17 8 1146 1778 230 36 38 chr12 73548095 73548222 -47709308 + RMER20A LTR ERVK 12 138 -378 8 1146 342 0 0 0 chr12 73548222 73548260 -47709270 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1146 1778 230 36 38 chr12 73548260 73548638 -47708892 + RMER20A LTR ERVK 139 516 0 8 1146 204 358 64 18 chr12 73548713 73548932 -47708598 + L2a LINE L2 2916 3144 -282 8 1146 427 286 336 29 chr12 73549117 73549351 -47708179 - MLT1A1 LTR MaLR 0 408 100 9 1146 2721 93 42 8 chr12 73549351 73549751 -47707779 + Lx LINE L1 6241 6654 0 9 1146 274 289 62 55 chr12 73549751 73549770 -47707760 - MLT1A1 LTR MaLR -309 99 83 9 1146 333 0 0 0 chr12 73550031 73550068 -47707462 + (T)n Simple_repeat Simple_repeat 1 37 0 9 1146 243 301 0 12 chr12 73551126 73551210 -47706320 + L1M5 LINE L1 5584 5666 -458 9 1146 23 33 0 0 chr12 73551697 73551727 -47705803 + AT_rich Low_complexity Low_complexity 1 30 0 9 1146 849 165 12 19 chr12 73551939 73552100 -47705430 + B3 SINE B2 1 160 -56 9 1146 489 17 0 0 chr12 73552109 73552167 -47705363 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1146 784 19 9 0 chr12 73552495 73552602 -47704928 - L1Md_T LINE L1 0 6582 6475 9 1146 362 262 0 0 chr12 73552836 73552916 -47704614 - ID4_ SINE ID -2 81 2 9 1146 749 80 71 14 chr12 73553196 73553336 -47704194 + URR1A DNA MER1_type 79 226 0 9 1146 388 304 37 32 chr12 73553673 73553863 -47703667 + L2 LINE L2 2474 2664 -755 1 1146 444 51 0 0 chr12 73553959 73554018 -47703512 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1146 272 266 16 0 chr12 73554019 73554083 -47703447 - RSINE1 SINE B4 -18 147 83 1 1146 510 31 0 0 chr12 73555816 73555880 -47701650 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1146 1470 162 235 6 chr12 73556589 73556930 -47700600 - MTD LTR MaLR 0 419 1 1 1146 21 0 0 0 chr12 73557319 73557340 -47700190 + AT_rich Low_complexity Low_complexity 1 21 0 1 1146 247 290 38 123 chr12 73557347 73557453 -47700077 + B4A SINE B4 45 141 -151 1 1146 629 192 0 8 chr12 73557567 73557807 -47699723 + (CA)n Simple_repeat Simple_repeat 1 237 0 1 1146 2534 44 81 0 chr12 73558024 73558344 -47699186 - ORR1A0 LTR MaLR 0 346 1 1 1146 1095 269 17 10 chr12 73558590 73558879 -47698651 + B4 SINE B4 2 292 0 1 1146 559 265 82 19 chr12 73559390 73559555 -47697975 + B3A SINE B2 4 180 -18 1 1146 27 0 0 0 chr12 73559567 73559594 -47697936 + AT_rich Low_complexity Low_complexity 1 27 0 1 1146 268 333 0 12 chr12 73559774 73559859 -47697671 - MER46C DNA MER2_type -1 337 254 1 1146 680 48 0 0 chr12 73559869 73559953 -47697577 - BC1_Mm scRNA scRNA -68 84 1 1 1146 463 280 52 21 chr12 73560208 73560401 -47697129 - MER96B DNA hAT -28 389 191 1 1146 493 268 124 60 chr12 73562449 73562699 -47694831 - RLTR18 LTR ERVK -4 612 347 1 1146 505 152 9 9 chr12 73563621 73563727 -47693803 + (CATA)n Simple_repeat Simple_repeat 2 107 0 1 1146 281 321 25 0 chr12 73563812 73563893 -47693637 + ID4_ SINE ID 1 83 0 1 1146 4933 162 6 8 chr12 73565578 73566514 -47691016 - L1_Mur2 LINE L1 -366 5511 4577 1 1146 698 227 10 88 chr12 73569283 73569476 -47688054 + B3A SINE B2 2 179 -19 1 1146 215 219 73 0 chr12 73569719 73569760 -47687770 + RSINE1 SINE B4 54 97 -68 1 1146 260 179 11 0 chr12 73569763 73569842 -47687688 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1146 423 0 0 0 chr12 73569842 73569889 -47687641 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1146 260 179 11 0 chr12 73569889 73569904 -47687626 + (CA)n Simple_repeat Simple_repeat 2 17 0 1 1146 289 271 112 20 chr12 73569972 73570070 -47687460 - B1F2 SINE Alu -24 125 19 1 1146 508 319 137 28 chr12 73570615 73570870 -47686660 - MER2 DNA MER2_type -54 291 9 1 1146 267 31 0 0 chr12 73572098 73572130 -47685400 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1146 1266 87 26 32 chr12 73572258 73572448 -47685082 - B2_Mm2 SINE B2 -5 190 2 1 1146 25 65 0 0 chr12 73572834 73572880 -47684650 + AT_rich Low_complexity Low_complexity 1 46 0 1 1146 321 358 65 35 chr12 73572880 73573080 -47684450 - L1M5 LINE L1 -1330 4816 4611 1 1146 413 50 0 16 chr12 73573210 73573271 -47684259 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1146 893 266 35 28 chr12 73573284 73573570 -47683960 - B4A SINE B4 -3 289 2 1 1146 21 82 0 0 chr12 73574154 73574203 -47683327 + AT_rich Low_complexity Low_complexity 1 49 0 1 1146 189 303 44 29 chr12 73575586 73575654 -47681876 + L2 LINE L2 2672 2740 -679 1 1146 248 111 0 0 chr12 73576889 73576925 -47680605 - U2 snRNA snRNA -149 39 4 1 1146 341 219 130 0 chr12 73577180 73577303 -47680227 + L1MA9 LINE L1 5940 6078 -234 1 1146 362 247 0 0 chr12 73579031 73579108 -47678422 + PB1D10 SINE Alu 34 110 -7 1 1146 700 170 6 0 chr12 73580681 73580800 -47676730 + B3 SINE B2 2 123 -72 1 1146 468 0 0 0 chr12 73580800 73580852 -47676678 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1146 564 253 80 6 chr12 73580852 73580907 -47676623 + B2_Mm2 SINE B2 124 188 -7 1 1146 456 284 137 104 chr12 73581466 73581630 -47675900 + L1ME3B LINE L1 5619 5769 -471 1 1146 872 227 38 24 chr12 73581630 73581842 -47675688 + ID_B1 SINE B4 3 217 -7 1 1146 456 284 137 104 chr12 73581842 73582224 -47675306 + L1ME3B LINE L1 5770 6183 -57 1 1146 574 298 30 0 chr12 73582641 73582876 -47674654 - L1MA9 LINE L1 -169 6143 5902 1 1146 242 323 115 0 chr12 73583552 73583648 -47673882 - LTR16A LTR ERVL -283 168 62 1 1146 4808 65 17 1 chr12 73584448 73585143 -47672387 - MusHAL1 LINE L1 -564 2148 1443 1 1146 4075 45 11 54 chr12 73585138 73585754 -47671776 + MusHAL1 LINE L1 2113 2702 -10 1 1146 269 169 0 17 chr12 73585828 73585888 -47671642 + A-rich Low_complexity Low_complexity 2 60 0 1 1146 25 0 0 0 chr12 73586697 73586722 -47670808 + AT_rich Low_complexity Low_complexity 1 25 0 1 1146 186 103 0 0 chr12 73587672 73587701 -47669829 + (TCC)n Simple_repeat Simple_repeat 1 29 0 1 1146 25 51 0 0 chr12 73587858 73587897 -47669633 + AT_rich Low_complexity Low_complexity 1 39 0 1 1146 4115 69 6 2 chr12 73589182 73589707 -47667823 - L1_Mus3 LINE L1 -2 6636 6110 1 1146 239 327 83 39 chr12 73589870 73590026 -47667504 + L4 LINE RTE 1767 1929 -100 1 1146 258 105 0 0 chr12 73590028 73590066 -47667464 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1 1146 793 145 13 88 chr12 73590067 73590226 -47667304 - B1_Mur4 SINE Alu -3 147 1 1 1146 860 163 7 45 chr12 73590576 73590730 -47666800 + B1_Mur4 SINE Alu 2 149 -1 1 1146 387 296 10 0 chr12 73590799 73590897 -47666633 + 5S rRNA rRNA 2 100 -21 1 1146 1704 206 136 9 chr12 73590949 73591390 -47666140 - RLTR19 LTR ERVK 0 499 3 1 1146 712 102 87 0 chr12 73591965 73592092 -47665438 - Lx2 LINE L1 0 6997 6860 1 1146 585 180 117 101 chr12 73592604 73592783 -47664747 - RMER12 LTR ERVK -153 1169 988 1 1146 578 90 117 7 chr12 73592783 73592928 -47664602 + GA-rich Low_complexity Low_complexity 3 163 0 1 1146 331 311 61 47 chr12 73592928 73593193 -47664337 + HAL1-3A_ME LINE L1 2284 2439 -419 1 1146 226 368 0 0 chr12 73593198 73593266 -47664264 + A-rich Low_complexity Low_complexity 5 72 0 1 1146 406 135 89 30 chr12 73593270 73593438 -47664092 + GA-rich Low_complexity Low_complexity 3 180 0 1 1146 1680 239 40 96 chr12 73593572 73594362 -47663168 - RMER12 LTR ERVK -1102 746 1 1 1146 263 298 126 20 chr12 73594889 73595088 -47662442 - L1MDa LINE L1 -5363 1270 1051 1 1146 516 148 0 42 chr12 73597032 73597152 -47660378 + GA-rich Low_complexity Low_complexity 2 116 0 1 1146 1174 42 0 27 chr12 73597418 73597565 -47659965 + B1_Mus2 SINE Alu 5 147 0 1 1146 333 242 38 38 chr12 73599411 73599544 -47657986 - L1ME1 LINE L1 -152 6027 5895 1 1146 263 208 25 25 chr12 73599703 73599782 -47657748 - L1ME1 LINE L1 -282 5897 5819 1 1146 467 325 102 36 chr12 73599829 73600330 -47657200 - L1ME1 LINE L1 -1464 4682 4149 1 1146 23 33 0 0 chr12 73600392 73600422 -47657108 + AT_rich Low_complexity Low_complexity 1 30 0 1 1146 343 274 38 19 chr12 73601012 73601172 -47656358 - L1MA4 LINE L1 -398 5902 5740 1 1146 222 194 42 21 chr12 73601287 73601382 -47656148 + (TA)n Simple_repeat Simple_repeat 1 97 0 1 1146 192 333 104 116 chr12 73602145 73602318 -47655212 + MIRm SINE MIR 95 265 -11 1 1146 259 256 0 60 chr12 73602500 73602583 -47654947 + ALINE LINE RTE 159 236 -381 1 1146 232 276 52 13 chr12 73602627 73602704 -47654826 + ID4_ SINE ID 2 81 -2 1 1146 905 286 114 17 chr12 73602781 73603133 -47654397 - LTR80A LTR ERVL -124 459 74 1 1146 252 167 0 0 chr12 73605892 73605940 -47651590 + CT-rich Low_complexity Low_complexity 1 48 0 1 1146 528 280 13 1 chr12 73605940 73606079 -47651451 - B1F SINE Alu -1 148 1 1 1146 692 353 71 54 chr12 73606140 73606673 -47650857 - MER68 LTR ERVL 0 563 22 1 1146 333 288 26 22 chr12 73606917 73607021 -47650509 + PB1D10 SINE Alu 9 115 -34 1 1146 543 147 98 0 chr12 73608163 73608265 -47649265 + B1_Mus2 SINE Alu 35 146 -1 1 1146 298 321 66 78 chr12 73608541 73608784 -47648746 + Tigger13a DNA MER2_type 257 496 -275 1 1146 359 252 83 55 chr12 73608871 73608980 -47648550 + PB1D10 SINE Alu 3 114 -3 1 1146 1226 47 0 66 chr12 73609398 73609579 -47647951 - B2_Mm2 SINE B2 0 195 27 1 1146 518 260 142 21 chr12 73609701 73610095 -47647435 - MLT1D LTR MaLR -5 500 1 1 1146 493 268 24 0 chr12 73612252 73612379 -47645151 + RSINE1 SINE B4 11 140 -25 1 1146 279 0 0 0 chr12 73612426 73612457 -47645073 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1146 595 245 21 28 chr12 73612991 73613134 -47644396 - B1_Mur2 SINE Alu -7 142 1 1 1146 188 255 83 21 chr12 73614349 73614397 -47643133 - L3 LINE CR1 -507 3982 3932 1 1146 325 232 261 44 chr12 73616026 73616206 -47641324 + ID_B1 SINE B4 1 219 -5 1 1146 24 32 0 0 chr12 73616279 73616310 -47641220 + AT_rich Low_complexity Low_complexity 1 31 0 1 1146 24 0 0 0 chr12 73616943 73616967 -47640563 + AT_rich Low_complexity Low_complexity 1 24 0 1 1146 23 33 0 0 chr12 73618844 73618874 -47638656 + AT_rich Low_complexity Low_complexity 1 30 0 1 1146 450 0 0 0 chr12 73619198 73619248 -47638282 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1146 181 274 157 78 chr12 73621595 73621710 -47635820 + MIR3 SINE MIR 6 129 -79 1 1146 32 43 0 0 chr12 73622065 73622111 -47635419 + AT_rich Low_complexity Low_complexity 1 46 0 1 1146 7936 35 9 3 chr12 73622134 73623682 -47633848 - L1Md_F2 LINE L1 0 6582 5024 1 1146 1456 67 10 5 chr12 73623722 73623916 -47633614 - B2_Mm2 SINE B2 0 195 1 1 1146 644 258 109 35 chr12 73623981 73624182 -47633348 - ID_B1 SINE B4 -8 216 1 1 1146 875 266 140 32 chr12 73624275 73624768 -47632762 - L1MB3 LINE L1 -102 6081 5536 1 1146 684 203 30 0 chr12 73625025 73625158 -47632372 - B1_Mur1 SINE Alu -11 138 2 1 1146 308 216 16 139 chr12 73625048 73625177 -47632353 - MT2B LTR ERVL -338 263 151 1 1146 369 250 29 9 chr12 73625639 73625767 -47631763 - Lx7 LINE L1 -2 7694 7579 1 1146 458 119 20 0 chr12 73625770 73625871 -47631659 + (TCTG)n Simple_repeat Simple_repeat 2 104 0 2 1146 351 231 0 0 chr12 73625934 73626068 -47631462 + (CA)n Simple_repeat Simple_repeat 1 134 0 2 1146 312 211 0 34 chr12 73626068 73626127 -47631403 + HAL1-3A_ME LINE L1 1975 2031 -827 2 1146 1368 78 0 11 chr12 73628830 73629011 -47628519 + B2_Mm2 SINE B2 3 181 -14 2 1146 1149 48 7 7 chr12 73629034 73629180 -47628350 + B1_Mus1 SINE Alu 3 148 0 2 1146 188 23 21 83 chr12 73629180 73629228 -47628302 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2 1146 51 31 0 0 chr12 73629768 73629833 -47627697 + AT_rich Low_complexity Low_complexity 1 65 0 2 1146 425 244 156 8 chr12 73629859 73629987 -47627543 + B1_Mur2 SINE Alu 1 147 -2 2 1146 586 244 0 0 chr12 73630312 73630427 -47627103 - B1_Mur1 SINE Alu -32 117 3 2 1146 280 291 8 107 chr12 73630320 73630451 -47627079 - MT2B LTR ERVL -338 263 146 2 1146 804 251 61 10 chr12 73630698 73630895 -47626635 + ID_B1 SINE B4 11 217 -7 2 1146 2099 180 61 67 chr12 73631222 73631744 -47625786 + RMER19C LTR ERVK 1 608 -3 2 1146 210 310 244 6 chr12 73631815 73631987 -47625543 + MIRb SINE MIR 9 221 -47 2 1146 351 0 0 0 chr12 73632423 73632462 -47625068 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1146 1396 67 6 0 chr12 73632719 73632897 -47624633 - B2_Mm1a SINE B2 -14 179 1 2 1146 655 230 82 27 chr12 73633783 73633966 -47623564 - Tigger1 DNA MER2_type -1 2417 2225 2 1146 600 305 21 129 chr12 73633968 73634209 -47623321 + B3A SINE B2 1 215 -1 2 1146 1473 278 73 26 chr12 73634228 73634694 -47622836 - Tigger1 DNA MER2_type -188 2230 1743 2 1146 1440 275 138 14 chr12 73634759 73635381 -47622149 - Tigger1 DNA MER2_type -1433 985 287 2 1146 356 274 7 108 chr12 73635503 73635582 -47621948 + Tigger1 DNA MER2_type 2217 2295 -123 2 1146 1107 95 89 0 chr12 73635582 73635751 -47621779 - B2_Mm2 SINE B2 -10 185 2 2 1146 356 274 7 108 chr12 73635751 73635810 -47621720 + Tigger1 DNA MER2_type 2296 2341 -77 2 1146 1130 82 0 7 chr12 73635853 73636001 -47621529 + B1_Mm SINE Alu 1 147 0 2 1146 1206 48 0 0 chr12 73636444 73636591 -47620939 + B1_Mus2 SINE Alu 1 147 0 2 1146 189 0 0 0 chr12 73636591 73636612 -47620918 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1146 842 278 139 41 chr12 73638367 73639030 -47618500 - L1MB8 LINE L1 -36 6142 5415 2 1146 216 97 0 0 chr12 73639138 73639169 -47618361 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 2 1146 574 122 22 22 chr12 73639372 73639464 -47618066 + B1_Mur4 SINE Alu 11 102 -48 2 1146 772 125 19 9 chr12 73640747 73640888 -47616642 - ORR1B2 LTR MaLR -225 153 1 2 1146 349 162 26 188 chr12 73641470 73641591 -47615939 - PB1D9 SINE Alu -10 110 8 2 1146 207 0 0 0 chr12 73643384 73643407 -47614123 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 2 1146 24408 137 55 22 chr12 73643409 73647824 -47609706 - Lx4B LINE L1 -21 7037 2400 2 1146 1157 68 0 0 chr12 73647824 73647971 -47609559 + B1_Mus2 SINE Alu 1 147 0 2 1146 24408 131 38 20 chr12 73647971 73649217 -47608313 - Lx4B LINE L1 -3478 2399 1207 2 1146 1613 57 0 0 chr12 73649217 73649426 -47608104 - L1Md_A LINE L1 0 6582 6374 2 1146 1978 201 35 31 chr12 73649426 73649822 -47607708 - Lx4B LINE L1 -5777 1207 798 2 1146 713 270 91 72 chr12 73650414 73650764 -47606766 + MLT1A0 LTR MaLR 1 370 -4 2 1146 938 318 138 111 chr12 73650849 73651900 -47605630 + MLT1A0-int LTR MaLR 261 1339 -32 2 1146 737 282 86 32 chr12 73651900 73652215 -47605315 + RMER10A LTR ERVL 1 332 -110 2 1146 329 176 44 0 chr12 73652631 73652699 -47604831 + RMER10A LTR ERVL 360 430 -12 2 1146 304 244 29 101 chr12 73652849 73653008 -47604522 + MLT1A0 LTR MaLR 196 369 -21 2 1146 738 77 248 0 chr12 73653156 73653273 -47604257 + B1_Mus1 SINE Alu 1 146 -2 2 1146 505 208 59 0 chr12 73653496 73653597 -47603933 - B1_Mur2 SINE Alu -1 148 42 2 1146 2151 156 105 63 chr12 73653599 73654105 -47603425 + RLTR24 LTR ERV1 3 529 0 2 1146 389 259 34 51 chr12 73656684 73656802 -47600728 - RSINE1 SINE B4 -35 130 15 2 1146 842 279 77 63 chr12 73657916 73658437 -47599093 - L1MB8 LINE L1 -1 6177 5650 2 1146 4399 14 2 0 chr12 73658468 73658960 -47598570 - MT2_Mm LTR ERVL 0 493 1 2 1146 302 0 0 0 chr12 73658960 73658998 -47598532 - MERVL-int LTR ERVL 0 5485 5448 2 1146 390 167 46 35 chr12 73658998 73659085 -47598445 - ORR1A3-int LTR MaLR -1323 640 553 2 143 45119 16 7 0 chr12 73659085 73664409 -47593121 - MERVL-int LTR ERVL -125 5360 1 2 1147 4399 14 2 0 chr12 73664409 73664901 -47592629 - MT2_Mm LTR ERVL 0 493 1 2 1147 180 0 0 0 chr12 73666113 73666133 -47591397 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 2 1147 252 242 260 24 chr12 73666332 73666501 -47591029 - L1MB8 LINE L1 -2192 3954 3746 2 1147 62 85 0 0 chr12 73666714 73666867 -47590663 + AT_rich Low_complexity Low_complexity 1 153 0 2 1147 301 299 72 68 chr12 73666929 73667180 -47590350 + Lx8 LINE L1 7222 7473 0 2 1147 470 255 33 13 chr12 73667538 73667689 -47589841 + ID_B1 SINE B4 63 216 -8 2 1147 229 211 58 0 chr12 73667644 73667696 -47589834 + PB1D7 SINE Alu 65 119 -1 2 1147 279 79 0 0 chr12 73668300 73668338 -47589192 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 2 1147 7979 55 35 6 chr12 73668443 73669656 -47587874 + L1_Mus3 LINE L1 5383 6632 -6 2 1147 1041 173 75 20 chr12 73671043 73671244 -47586286 - B3 SINE B2 -2 214 3 2 1147 722 75 0 9 chr12 73671299 73671406 -47586124 + B1_Mm SINE Alu 42 147 0 2 1147 264 313 150 9 chr12 73671497 73671710 -47585820 + L2 LINE L2 1837 2079 -1340 2 1147 217 203 67 17 chr12 73671928 73671988 -47585542 + L2 LINE L2 2792 2854 -565 2 1147 1065 174 15 5 chr12 73671994 73672196 -47585334 + URR1A DNA MER1_type 7 210 -16 2 1147 1056 288 88 43 chr12 73673039 73673572 -47583958 - Lx8 LINE L1 -15 7458 6902 2 1147 234 306 125 8 chr12 73673887 73674040 -47583490 - L2a LINE L2 -49 3377 3225 2 1147 343 239 41 55 chr12 73675754 73675900 -47581630 - ID_B1 SINE B4 -74 150 7 2 1147 246 32 0 0 chr12 73675903 73675934 -47581596 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1147 220 274 186 62 chr12 73675962 73676075 -47581455 - ID_B1 SINE B4 -12 212 86 2 1147 1054 72 58 0 chr12 73676121 73676260 -47581270 + B1_Mm SINE Alu 1 147 0 2 1147 619 305 143 60 chr12 73677144 73677723 -47579807 + L1M4b LINE L1 129 755 -6579 2 1147 250 158 35 0 chr12 73677859 73677916 -47579614 + L1MB7 LINE L1 3720 3778 -2368 2 1147 698 260 88 0 chr12 73678003 73678195 -47579335 + B3 SINE B2 2 210 -6 2 1147 250 308 13 13 chr12 73678212 73678291 -47579239 + ID4_ SINE ID 5 83 0 2 1147 314 262 75 0 chr12 73678323 73678403 -47579127 + B1F SINE Alu 6 91 -58 2 1147 529 231 34 0 chr12 73678581 73678698 -47578832 + B3 SINE B2 12 132 -84 2 1147 308 276 23 0 chr12 73678794 73678881 -47578649 + ID_B1 SINE B4 133 221 -3 2 1147 461 212 133 0 chr12 73678891 73679094 -47578436 + L1MB7 LINE L1 5153 5382 -764 2 1147 342 138 0 0 chr12 73679099 73679157 -47578373 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1147 277 264 0 27 chr12 73679191 73679265 -47578265 + ID4 SINE ID 2 73 -10 2 1147 374 301 169 40 chr12 73679304 73679654 -47577876 + L1MB7 LINE L1 5468 5862 -312 2 1147 242 342 25 49 chr12 73679682 73679885 -47577645 + L1MB7 LINE L1 5972 6169 -9 2 1147 673 154 94 0 chr12 73679933 73680082 -47577448 - L1_Mus4 LINE L1 0 6636 6474 2 1147 501 274 146 100 chr12 73681162 73681422 -47576108 - B4 SINE B4 -18 274 3 2 1147 878 109 21 55 chr12 73681800 73681945 -47575585 + B1_Mus1 SINE Alu 2 141 -7 2 1147 980 149 6 0 chr12 73681945 73682119 -47575411 + GA-rich Low_complexity Low_complexity 4 178 0 2 1147 486 0 0 0 chr12 73682121 73682175 -47575355 + (GGAGA)n Simple_repeat Simple_repeat 4 57 0 2 1147 1288 61 6 6 chr12 73682183 73682363 -47575167 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1147 202 27 51 51 chr12 73682544 73682583 -47574947 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1147 3746 184 234 7 chr12 73682612 73683445 -47574085 - RMER1B Other Other -2 1064 43 2 1147 190 342 76 44 chr12 73683510 73683785 -47573745 + L2 LINE L2 1941 2224 -1195 2 1147 714 12 0 0 chr12 73683895 73683978 -47573552 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 2 1147 243 323 119 6 chr12 73684159 73684318 -47573212 + L1MEg LINE L1 146 322 -5762 2 1147 698 141 16 0 chr12 73684529 73684650 -47572880 - ORR1C2 LTR MaLR 0 384 262 2 1147 1985 107 0 102 chr12 73684654 73685008 -47572522 - ORR1A3 LTR MaLR -8 318 1 2 1147 657 187 77 22 chr12 73685012 73685219 -47572311 - ORR1C2 LTR MaLR -130 254 1 2 1147 887 142 216 29 chr12 73685339 73685543 -47571987 - RMER1C Other Other -3 1339 1098 2 1147 2126 174 33 22 chr12 73685543 73686031 -47571499 + RLTR16 LTR ERVK 1 493 -12 2 1147 265 233 39 64 chr12 73686028 73686106 -47571424 + RLTR16 LTR ERVK 430 505 0 2 1147 582 108 17 128 chr12 73686108 73686166 -47571364 - RMER1C Other Other -241 1101 1052 2 1147 1335 102 16 0 chr12 73686166 73686352 -47571178 - B2_Mm2 SINE B2 -6 189 1 2 1147 582 108 17 128 chr12 73686352 73686410 -47571120 - RMER1C Other Other -291 1051 998 2 1147 566 292 80 6 chr12 73686412 73686574 -47570956 - RMER1C Other Other -631 711 538 2 1147 32490 80 23 8 chr12 73686937 73692231 -47565299 + L1Md_F LINE L1 214 5586 -297 2 1147 7575 69 5 13 chr12 73692231 73693221 -47564309 + L1Md_F2 LINE L1 5587 6568 -14 2 1147 210 71 0 0 chr12 73694473 73694501 -47563029 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 2 1147 2558 141 106 29 chr12 73694761 73695251 -47562279 - RLTR11A LTR ERVK 0 528 1 2 1147 30 27 0 0 chr12 73695613 73695650 -47561880 + AT_rich Low_complexity Low_complexity 1 37 0 2 1147 694 269 97 48 chr12 73695653 73695922 -47561608 + B4A SINE B4 1 282 -10 2 1147 210 122 49 0 chr12 73695932 73695973 -47561557 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 1147 409 290 157 39 chr12 73696352 73696625 -47560905 + RLTR18B LTR ERVK 2 306 -310 2 1147 993 269 50 13 chr12 73696681 73696982 -47560548 + RLTR18B LTR ERVK 199 510 -2 2 1147 309 283 0 80 chr12 73697915 73698015 -47559515 + ID_B1 SINE B4 50 141 -83 2 1147 404 118 15 0 chr12 73698125 73698193 -47559337 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1147 898 308 95 46 chr12 73698259 73698763 -47558767 + L1_Rod LINE L1 1696 2242 -3605 2 1147 1466 88 16 0 chr12 73698763 73698955 -47558575 + B2_Mm2 SINE B2 1 195 0 2 1147 898 308 95 46 chr12 73698955 73699083 -47558447 + L1_Rod LINE L1 2243 2359 -3488 2 1147 228 130 0 0 chr12 73699134 73699180 -47558350 + (A)n Simple_repeat Simple_repeat 1 46 0 2 1147 1028 226 137 29 chr12 73699199 73699505 -47558025 + MTD LTR MaLR 81 419 0 2 1147 2459 126 116 20 chr12 73699718 73700156 -47557374 + RLTR45 LTR ERVK 3 482 0 2 1147 1491 114 44 0 chr12 73700156 73700383 -47557147 + RLTR45-int LTR ERVK 1 237 -7007 2 1147 934 91 0 70 chr12 73700383 73700525 -47557005 + RLTR45-int LTR ERVK 440 571 -6673 2 1147 1171 28 0 40 chr12 73701301 73701451 -47556079 + RLTR45-int LTR ERVK 549 692 -6552 2 1147 1989 35 0 0 chr12 73701813 73702043 -47555487 + RLTR45-int LTR ERVK 681 910 -6334 2 1147 2627 52 0 0 chr12 73702076 73702386 -47555144 + RLTR45-int LTR ERVK 1329 1638 -5606 2 1147 7709 155 22 13 chr12 73702396 73703874 -47553656 + RLTR45-int LTR ERVK 6331 7805 -412 2 1147 1321 72 5 40 chr12 73703874 73704076 -47553454 + RLTR45 LTR ERVK 1 195 -287 2 1147 523 108 88 0 chr12 73704066 73704168 -47553362 + RLTR45 LTR ERVK 372 482 0 2 1147 194 327 37 37 chr12 73704455 73704563 -47552967 + L2a LINE L2 3301 3408 -18 3 1147 233 283 0 0 chr12 73704663 73704716 -47552814 - ID4 SINE ID -19 64 12 3 1147 305 307 9 17 chr12 73705436 73705552 -47551978 - L3 LINE CR1 -254 4235 4121 3 1147 2808 77 13 96 chr12 73705777 73706236 -47551294 + BGLII LTR ERVK 1 421 0 3 1147 1203 49 7 0 chr12 73706260 73706404 -47551126 - B1_Mm SINE Alu -2 145 1 3 1147 21 57 0 0 chr12 73706790 73706825 -47550705 + AT_rich Low_complexity Low_complexity 1 35 0 3 1147 312 295 127 37 chr12 73706855 73707210 -47550320 - RMER10A LTR ERVL -27 415 29 3 1147 1502 270 50 8 chr12 73707216 73707731 -47549799 - Lx5 LINE L1 -574 6886 6455 3 1147 3249 50 20 2 chr12 73707731 73707915 -47549615 + MTB_Mm LTR MaLR 1 185 -222 3 1147 180 0 0 0 chr12 73707915 73707935 -47549595 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1147 3249 50 20 2 chr12 73707935 73708150 -47549380 + MTB_Mm LTR MaLR 186 405 -2 3 1147 1306 246 88 12 chr12 73708150 73708245 -47549285 - Lx5 LINE L1 -846 6614 6519 3 1147 458 233 136 17 chr12 73708279 73708397 -47549133 + Lx6 LINE L1 7267 7398 -62 3 1147 289 291 0 0 chr12 73708416 73708495 -47549035 + B4 SINE B4 214 292 0 3 1147 250 274 0 0 chr12 73708632 73708694 -47548836 + PB1D10 SINE Alu 19 80 -37 3 1147 1695 108 0 0 chr12 73708702 73708925 -47548605 - Lx3C LINE L1 -362 6614 6392 3 1147 355 221 0 120 chr12 73708979 73709087 -47548443 + PB1D9 SINE Alu 12 106 -14 3 1147 472 188 21 14 chr12 73709099 73709239 -47548291 + GA-rich Low_complexity Low_complexity 5 145 0 3 1147 1247 28 0 0 chr12 73709364 73709509 -47548021 + B1_Mus2 SINE Alu 3 147 0 3 1147 270 0 0 0 chr12 73709509 73709539 -47547991 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1147 1015 94 14 7 chr12 73709544 73709684 -47547846 + B1_Mus1 SINE Alu 2 142 -6 3 1147 237 301 70 39 chr12 73710162 73710290 -47547240 + L1M3 LINE L1 5622 5753 -436 3 1147 272 325 59 71 chr12 73710382 73710429 -47547101 - MIR SINE MIR -62 200 157 3 1147 2545 139 27 91 chr12 73710429 73710944 -47546586 + RLTR45 LTR ERVK 1 482 0 3 1147 272 325 59 71 chr12 73710944 73711065 -47546465 - MIR SINE MIR -106 156 34 3 1147 638 186 12 99 chr12 73711573 73711734 -47545796 - B1_Mur3 SINE Alu -2 147 1 3 1147 459 236 210 11 chr12 73711772 73711948 -47545582 + B3 SINE B2 6 216 0 3 1147 549 44 0 0 chr12 73712197 73712265 -47545265 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1147 2734 138 58 23 chr12 73713914 73714343 -47543187 + RLTR20A LTR ERVK 6 442 -99 3 1147 456 19 0 0 chr12 73714343 73714396 -47543134 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1147 2734 138 58 23 chr12 73714396 73714484 -47543046 + RLTR20A LTR ERVK 443 540 -1 3 1147 261 295 26 0 chr12 73714645 73714723 -47542807 + Lx8 LINE L1 6728 6807 -666 3 1147 1043 223 0 15 chr12 73714723 73714928 -47542602 + B3 SINE B2 2 203 -13 3 1147 195 114 0 0 chr12 73714962 73714997 -47542533 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1147 1378 104 0 5 chr12 73715431 73715625 -47541905 + B2_Mm2 SINE B2 2 194 -1 3 1147 309 257 0 14 chr12 73715633 73715704 -47541826 + ID_B1 SINE B4 81 150 -74 3 1147 1664 170 21 24 chr12 73715736 73716014 -47541516 - Lx LINE L1 -7 6647 6371 3 1147 2273 83 48 0 chr12 73716014 73716326 -47541204 - IAPLTR2b LTR ERVK 0 327 1 3 1147 1664 170 21 24 chr12 73716326 73716385 -47541145 - Lx LINE L1 -284 6370 6311 3 1147 669 163 73 52 chr12 73716452 73716588 -47540942 - B1_Mus1 SINE Alu 0 148 10 3 1147 216 97 0 0 chr12 73716697 73716728 -47540802 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1147 14044 84 26 37 chr12 73716816 73719518 -47538012 + L1VL2 LINE L1 295 2983 -632 3 1147 3240 36 15 13 chr12 73720690 73721085 -47536445 + MTA_Mm LTR MaLR 1 396 0 3 1147 701 247 0 20 chr12 73721193 73721342 -47536188 + B1_Mur2 SINE Alu 4 149 0 3 1147 267 130 0 0 chr12 73721488 73721542 -47535988 + (A)n Simple_repeat Simple_repeat 1 54 0 3 1147 252 0 0 0 chr12 73722734 73722762 -47534768 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1147 1308 90 11 0 chr12 73723200 73723377 -47534153 + B2_Mm1t SINE B2 1 179 -14 3 1147 247 70 35 17 chr12 73723436 73723494 -47534036 + B2_Mm2 SINE B2 137 195 0 3 1147 180 103 0 0 chr12 73723503 73723520 -47534010 + (A)n Simple_repeat Simple_repeat 1 17 0 3 1147 1246 48 0 0 chr12 73723520 73723667 -47533863 + B1_Mm SINE Alu 1 147 0 3 1147 180 103 0 0 chr12 73723667 73723678 -47533852 + (A)n Simple_repeat Simple_repeat 1 11 0 3 1147 303 271 14 0 chr12 73723890 73723960 -47533570 - ID4 SINE ID 0 83 13 3 1147 180 0 0 0 chr12 73724627 73724647 -47532883 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1147 2371 142 38 58 chr12 73724725 73725194 -47532336 + RMER6B LTR ERVK 2 461 0 3 1147 716 161 0 14 chr12 73725227 73725366 -47532164 + GA-rich Low_complexity Low_complexity 3 139 0 3 1147 791 161 0 28 chr12 73725453 73725594 -47531936 + B1_Mus1 SINE Alu 7 143 -5 3 1147 228 270 43 33 chr12 73726044 73726136 -47531394 + L1_Rod LINE L1 2127 2219 -3628 3 1147 279 333 33 13 chr12 73726382 73726535 -47530995 + L1M2 LINE L1 2548 2703 -3440 3 1147 297 0 0 0 chr12 73726963 73726996 -47530534 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1147 5898 69 13 11 chr12 73727572 73728367 -47529163 + Lx3_Mus LINE L1 6213 7008 -1 3 1147 360 176 0 0 chr12 73728378 73728446 -47529084 + GA-rich Low_complexity Low_complexity 3 70 0 3 1147 2950 50 10 23 chr12 73728491 73728878 -47528652 + L1Md_F2 LINE L1 6189 6570 -12 3 1147 627 198 0 0 chr12 73729277 73729388 -47528142 + B1_Mur4 SINE Alu 9 119 -31 3 1147 743 76 244 0 chr12 73729415 73729534 -47527996 + B1_Mus1 SINE Alu 1 148 0 3 1147 369 0 0 0 chr12 73730031 73730072 -47527458 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1147 25708 106 8 8 chr12 73730179 73734835 -47522695 + L1_Mus3 LINE L1 1981 6637 -1 3 1147 258 32 0 0 chr12 73734855 73734886 -47522644 + (GGA)n Simple_repeat Simple_repeat 3 33 0 3 1147 722 11 0 11 chr12 73734886 73734974 -47522556 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 3 1147 525 16 0 0 chr12 73735073 73735135 -47522395 + (TTTTG)n Simple_repeat Simple_repeat 1 62 0 3 1147 257 175 0 0 chr12 73735165 73735205 -47522325 + Lx8 LINE L1 7047 7086 -387 3 1147 1497 62 0 35 chr12 73735228 73735429 -47522101 + B2_Mm2 SINE B2 1 194 -1 3 1147 231 88 0 0 chr12 73737736 73737770 -47519760 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 3 1147 456 19 0 0 chr12 73737776 73737829 -47519701 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1147 828 149 68 52 chr12 73737912 73738103 -47519427 + B2_Mm2 SINE B2 2 195 0 3 1147 782 110 62 0 chr12 73738452 73738597 -47518933 + L1_Mus3 LINE L1 6484 6637 -1 3 1147 251 67 44 0 chr12 73738771 73738816 -47518714 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1147 1997 111 3 9 chr12 73739500 73739818 -47517712 + IAPLTR2b LTR ERVK 1 316 -11 3 1147 8887 145 72 34 chr12 73739830 73741529 -47516001 + IAPEz-int LTR ERVK 1 1962 -4519 3 1147 8354 59 4 0 chr12 73741530 73742535 -47514995 + IAPEz-int LTR ERVK 4416 5424 -1057 3 1147 4619 92 30 23 chr12 73742533 73743197 -47514333 + IAPEz-int LTR ERVK 5813 6481 0 3 1147 2035 84 16 22 chr12 73743197 73743515 -47514015 + IAPLTR2b LTR ERVK 1 316 -11 3 1147 867 171 0 33 chr12 73743749 73743900 -47513630 + B1_Mur2 SINE Alu 1 146 -3 3 1147 195 129 0 0 chr12 73743935 73743966 -47513564 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1147 1340 102 21 0 chr12 73744104 73744291 -47513239 + B2_Mm2 SINE B2 1 191 -4 3 1147 272 70 0 23 chr12 73744545 73744589 -47512941 + (TAA)n Simple_repeat Simple_repeat 2 44 0 3 1147 384 290 32 0 chr12 73744698 73744791 -47512739 + RSINE1 SINE B4 1 96 -69 3 1147 415 175 0 20 chr12 73745321 73745410 -47512120 - ORR1D2 LTR MaLR -2 419 287 3 1147 1694 150 19 25 chr12 73745424 73745739 -47511791 + ORR1B2 LTR MaLR 55 367 0 3 1147 6189 168 56 34 chr12 73745739 73747081 -47510449 + ORR1B2-int LTR MaLR 1 1371 -138 3 1147 356 169 0 0 chr12 73747138 73747203 -47510327 + RLTR19C LTR ERVK 33 97 -409 3 1147 487 287 25 111 chr12 73747411 73747654 -47509876 + RLTR33 LTR ERVK 447 668 -10 3 1147 568 145 137 53 chr12 73747659 73747790 -47509740 + ORR1B2-int LTR MaLR 1368 1509 0 3 1147 1580 146 115 0 chr12 73747792 73748079 -47509451 + ORR1B2 LTR MaLR 3 322 -45 3 1147 396 0 0 0 chr12 73748416 73748460 -47509070 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1147 384 22 0 0 chr12 73748756 73748801 -47508729 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 3 1147 291 240 58 39 chr12 73749163 73749267 -47508263 + MLT1A1 LTR MaLR 4 109 -299 3 1147 276 164 77 0 chr12 73749277 73749381 -47508149 + (TA)n Simple_repeat Simple_repeat 1 112 0 3 1147 1457 83 5 0 chr12 73749462 73749654 -47507876 + B2_Mm1a SINE B2 1 193 0 3 1147 1225 48 0 0 chr12 73749655 73749802 -47507728 + B1_Mus2 SINE Alu 1 147 0 3 1147 255 125 0 0 chr12 73749802 73749842 -47507688 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1147 251 265 0 29 chr12 73750444 73750514 -47507016 + BC1_Mm scRNA scRNA 34 101 -51 3 1147 307 253 98 40 chr12 73751074 73751247 -47506283 + RLTR41 LTR ERV1 264 446 0 3 1147 565 268 0 0 chr12 73751984 73752111 -47505419 + B1_Mur2 SINE Alu 2 128 -21 3 1147 533 52 13 0 chr12 73752115 73752192 -47505338 + (GGAA)n Simple_repeat Simple_repeat 1 78 0 3 1147 513 0 0 0 chr12 73752777 73752834 -47504696 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1147 242 342 51 0 chr12 73753553 73753632 -47503898 + Charlie19a DNA Charlie 31 113 -273 3 1147 254 291 0 25 chr12 73753747 73753828 -47503702 + ID4_ SINE ID 2 80 -3 3 1147 212 235 0 0 chr12 73754775 73754826 -47502704 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1147 758 213 130 100 chr12 73754858 73754959 -47502571 + RMER21B LTR ERV1 299 411 -431 3 1147 315 71 0 0 chr12 73754959 73755001 -47502529 + (CCA)n Simple_repeat Simple_repeat 1 42 0 3 1147 758 213 130 100 chr12 73755001 73755160 -47502370 + RMER21B LTR ERV1 412 567 -275 3 1147 1416 177 79 145 chr12 73755320 73755397 -47502133 + RMER15 LTR ERVL 27 102 -473 3 1147 1104 49 27 27 chr12 73755397 73755545 -47501985 + B1_Mus1 SINE Alu 1 148 0 3 1147 1416 177 79 145 chr12 73755545 73755909 -47501621 + RMER15 LTR ERVL 103 439 -136 3 1147 513 193 19 28 chr12 73755892 73756007 -47501523 + B3 SINE B2 86 195 -3 4 1147 274 247 41 0 chr12 73756063 73756136 -47501394 + ID_B1 SINE B4 86 161 -63 4 1147 261 260 51 20 chr12 73756136 73756161 -47501369 + B1_Mus2 SINE Alu 5 105 -42 4 1147 252 0 0 0 chr12 73757633 73757661 -47499869 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1147 586 186 93 0 chr12 73757673 73757802 -47499728 + B1_Mur4 SINE Alu 10 150 0 4 1147 433 192 23 15 chr12 73757802 73757934 -47499596 + GA-rich Low_complexity Low_complexity 2 134 0 4 1147 236 35 0 0 chr12 73757934 73757963 -47499567 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 4 1147 269 157 11 53 chr12 73757964 73758058 -47499472 + A-rich Low_complexity Low_complexity 5 94 0 4 1147 647 207 107 24 chr12 73758589 73758757 -47498773 + B3A SINE B2 17 198 0 4 1147 422 216 13 115 chr12 73758780 73758797 -47498733 + ID_B1 SINE B4 76 216 -8 4 1147 749 116 14 79 chr12 73758797 73758937 -47498593 + B1_Mus2 SINE Alu 9 139 -8 4 1147 693 134 0 0 chr12 73759578 73759690 -47497840 + (GGGAGA)n Simple_repeat Simple_repeat 4 115 0 4 1147 201 147 0 0 chr12 73759876 73759910 -47497620 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1147 273 57 0 0 chr12 73760180 73760215 -47497315 + (CACG)n Simple_repeat Simple_repeat 2 36 0 4 1147 562 286 20 51 chr12 73760669 73760790 -47496740 + ID_B1 SINE B4 32 146 -78 4 1147 1479 69 0 5 chr12 73760790 73760980 -47496550 + B2_Mm2 SINE B2 2 190 -5 4 1147 562 286 20 51 chr12 73760980 73761053 -47496477 + ID_B1 SINE B4 147 220 -4 4 1147 1017 115 0 39 chr12 73761124 73761278 -47496252 + B1_Mur4 SINE Alu 3 150 0 4 1147 363 271 7 52 chr12 73761773 73761909 -47495621 - RSINE1 SINE B4 -9 156 27 4 1147 766 112 104 0 chr12 73761924 73762058 -47495472 - RLTR14 LTR ERV1 -1 381 234 4 1147 249 33 0 0 chr12 73762058 73762088 -47495442 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1147 1094 48 0 0 chr12 73762088 73762234 -47495296 - B1_Mm SINE Alu 0 147 2 4 1147 833 124 118 0 chr12 73762263 73762432 -47495098 - RLTR14 LTR ERV1 -191 191 3 4 1147 1167 34 0 27 chr12 73762585 73762726 -47494804 + B1_Mm SINE Alu 2 139 -8 4 1147 189 0 0 0 chr12 73762726 73762747 -47494783 + (CCA)n Simple_repeat Simple_repeat 1 21 0 4 1147 4354 54 2 19 chr12 73763739 73764303 -47493227 + L1_Mus2 LINE L1 6013 6566 0 4 1147 272 240 156 26 chr12 73764343 73764497 -47493033 - MER106B DNA MER1_type -583 476 303 4 1147 909 55 158 0 chr12 73766569 73766696 -47490834 - B1_Mm SINE Alu 0 147 1 4 1147 1114 209 5 0 chr12 73767219 73767430 -47490100 + B3 SINE B2 1 212 -4 4 1147 374 206 51 10 chr12 73767460 73767558 -47489972 - B1_Mur2 SINE Alu 0 149 48 4 1147 189 0 0 0 chr12 73767707 73767728 -47489802 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1147 1001 277 92 8 chr12 73767767 73768124 -47489406 + MLT2D LTR ERVL 25 411 -3 4 1147 465 66 0 0 chr12 73768273 73768334 -47489196 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1147 278 214 0 0 chr12 73768337 73768393 -47489137 - ID4 SINE ID -12 71 16 4 1147 225 176 29 14 chr12 73768433 73768502 -47489028 + (TATAA)n Simple_repeat Simple_repeat 2 71 0 4 1147 417 204 107 0 chr12 73768785 73768888 -47488642 - B1F2 SINE Alu -35 114 1 4 1147 180 0 0 0 chr12 73769583 73769603 -47487927 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1147 306 253 53 0 chr12 73769638 73769713 -47487817 + ID4_ SINE ID 3 81 -2 4 1147 446 246 0 60 chr12 73770220 73770263 -47487267 + PB1D7 SINE Alu 10 50 -70 4 1147 2527 43 179 193 chr12 73770263 73770782 -47486748 - RLTR1B LTR ERV1 0 512 1 4 1147 446 246 0 60 chr12 73770782 73770855 -47486675 + PB1D7 SINE Alu 51 119 -1 4 1147 570 101 58 48 chr12 73771219 73771323 -47486207 + B1_Mur4 SINE Alu 46 150 0 4 1147 198 0 0 0 chr12 73771332 73771354 -47486176 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1147 405 0 0 0 chr12 73771641 73771686 -47485844 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1147 453 162 0 112 chr12 73772717 73772842 -47484688 - RMER30 DNA MER1_type -62 140 30 4 1147 253 228 234 21 chr12 73772880 73772974 -47484556 + PB1D7 SINE Alu 6 119 -1 4 1147 299 375 8 15 chr12 73772974 73773104 -47484426 + RSINE1 SINE B4 3 131 -34 4 1147 264 151 26 40 chr12 73773501 73773577 -47483953 + GA-rich Low_complexity Low_complexity 4 78 0 4 1147 414 0 0 0 chr12 73773756 73773802 -47483728 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1147 1253 232 120 36 chr12 73773840 73774061 -47483469 + RMER5 LTR ERV1 21 271 -263 4 1147 1880 143 40 119 chr12 73774061 73774489 -47483041 + ORR1B1 LTR MaLR 1 394 0 4 1147 1253 232 120 36 chr12 73774489 73774741 -47482789 + RMER5 LTR ERV1 272 534 0 4 1147 228 341 51 34 chr12 73774984 73775160 -47482370 + L2 LINE L2 1784 1962 -1457 4 1147 1516 154 94 67 chr12 73776019 73776361 -47481169 - ORR1C1 LTR MaLR -2 376 26 4 1147 1207 204 0 5 chr12 73776462 73776679 -47480851 + B3 SINE B2 1 216 0 4 1147 488 273 60 36 chr12 73776755 73776922 -47480608 + MIR SINE MIR 62 232 -30 4 1147 724 272 37 57 chr12 73776970 73777266 -47480264 - B4A SINE B4 -2 290 1 4 1147 791 58 0 0 chr12 73777313 73777417 -47480113 - B1_Mus1 SINE Alu -5 143 40 4 1147 675 0 0 0 chr12 73777542 73777617 -47479913 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1147 618 181 26 0 chr12 73777617 73777733 -47479797 - B1_Mur1 SINE Alu -30 119 1 4 1147 963 287 132 34 chr12 73777937 73778347 -47479183 - L1MB1 LINE L1 -249 5940 5443 4 1147 3140 72 0 27 chr12 73778347 73778758 -47478772 + MTB LTR MaLR 1 400 0 4 1147 963 286 138 34 chr12 73778758 73779065 -47478465 - L1MB1 LINE L1 -405 5442 5081 4 1147 720 186 40 40 chr12 73779107 73779281 -47478249 - B2_Mm2 SINE B2 -19 176 3 4 1147 417 66 0 0 chr12 73779364 73779425 -47478105 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 4 1147 568 196 138 0 chr12 73779427 73779565 -47477965 + B3 SINE B2 59 215 -1 4 1147 965 74 0 7 chr12 73779617 73779753 -47477777 + (TCTCCC)n Simple_repeat Simple_repeat 2 136 0 4 1147 285 137 0 0 chr12 73780438 73780489 -47477041 - URR1B DNA MER1_type 0 225 175 4 1147 1075 209 19 14 chr12 73780700 73780914 -47476616 + B3 SINE B2 1 215 -1 4 1147 276 102 0 0 chr12 73780995 73781044 -47476486 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1147 547 27 0 0 chr12 73781044 73781117 -47476413 - B1_Mm SINE Alu 0 147 75 4 1147 291 304 0 0 chr12 73781257 73781336 -47476194 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 1147 5001 155 36 15 chr12 73781779 73782668 -47474862 - RMER13B LTR ERVK 0 908 1 4 1147 2547 107 64 43 chr12 73782976 73783397 -47474133 + RLTR23 LTR ERV1 1 430 0 4 1147 381 327 31 25 chr12 73784421 73784584 -47472946 + B4A SINE B4 3 166 -126 4 1147 925 207 31 5 chr12 73784668 73784862 -47472668 + B3 SINE B2 15 213 -3 4 1147 1644 26 11 0 chr12 73784921 73785111 -47472419 + B2_Mm1a SINE B2 2 193 0 4 1147 267 305 130 34 chr12 73785429 73785575 -47471955 + RSINE1 SINE B4 2 161 -4 4 1147 1182 36 0 0 chr12 73785748 73785885 -47471645 + B1_Mm SINE Alu 2 138 -9 4 1147 510 31 0 0 chr12 73785885 73785949 -47471581 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 1147 18968 100 32 24 chr12 73786270 73786322 -47471208 + ETnERV2-int LTR ERVK 3676 3727 -3679 4 1147 243 0 0 0 chr12 73786322 73786349 -47471181 + (CATG)n Simple_repeat Simple_repeat 2 28 0 4 1147 18968 100 32 24 chr12 73786349 73789018 -47468512 + ETnERV2-int LTR ERVK 3728 6420 -986 4 1147 524 93 0 13 chr12 73789234 73789310 -47468220 + ETnERV2-int LTR ERVK 7331 7405 -1 4 1147 1893 138 11 123 chr12 73789310 73789578 -47467952 + RLTR9E LTR ERVK 1 245 -164 4 1147 456 19 0 0 chr12 73789578 73789631 -47467899 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1147 1893 138 11 123 chr12 73789631 73789642 -47467888 + RLTR9E LTR ERVK 246 246 -163 4 1147 1162 55 7 7 chr12 73789642 73789789 -47467741 - B1_Mus2 SINE Alu 0 147 1 4 1147 1893 138 11 123 chr12 73789789 73789963 -47467567 + RLTR9E LTR ERVK 246 404 -5 4 1147 222 37 0 0 chr12 73789964 73789991 -47467539 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 1147 21 0 0 0 chr12 73791054 73791075 -47466455 + AT_rich Low_complexity Low_complexity 1 21 0 4 1147 457 62 302 50 chr12 73791535 73791654 -47465876 - B2_Mm2 SINE B2 0 195 47 4 1147 1067 89 134 0 chr12 73791668 73791825 -47465705 - B2_Mm1t SINE B2 -15 178 1 4 1147 651 258 76 64 chr12 73792344 73792593 -47464937 + RMER5 LTR ERV1 268 519 -15 4 1147 381 238 28 37 chr12 73792716 73792825 -47464705 - Tigger7 DNA MER2_type -2079 412 305 4 1147 403 289 9 9 chr12 73792942 73793057 -47464473 - PB1D10 SINE Alu 0 117 3 4 1147 596 319 60 0 chr12 73793069 73793251 -47464279 - Tigger7 DNA MER2_type -2194 297 105 4 1147 285 292 14 0 chr12 73793262 73793334 -47464196 + ID SINE ID 3 75 -149 4 1147 285 167 0 0 chr12 73793403 73793457 -47464073 + CT-rich Low_complexity Low_complexity 3 56 0 4 143 936 132 14 0 chr12 73793462 73793606 -47463924 - B1_Mur4 SINE Alu 0 150 5 4 1148 1689 31 0 0 chr12 73793672 73793863 -47463667 + B2_Mm1a SINE B2 2 192 -1 4 1148 352 276 40 8 chr12 73793900 73794024 -47463506 - L1M4c LINE L1 -4814 1570 1443 4 1148 337 310 61 17 chr12 73794033 73794148 -47463382 - B1F1 SINE Alu -27 122 3 4 1148 488 259 73 73 chr12 73794191 73794370 -47463160 - MER2 DNA MER2_type -165 180 2 4 1148 21 0 0 0 chr12 73795041 73795062 -47462468 + AT_rich Low_complexity Low_complexity 1 21 0 4 1148 369 0 0 0 chr12 73795275 73795316 -47462214 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1148 23 0 0 0 chr12 73795818 73795841 -47461689 + AT_rich Low_complexity Low_complexity 1 23 0 4 1148 260 228 139 0 chr12 73795896 73795975 -47461555 - Lx8 LINE L1 -3 7470 7381 4 1148 1998 261 24 36 chr12 73795978 73796554 -47460976 - Lx8 LINE L1 -317 7156 6588 4 1148 447 80 313 26 chr12 73796571 73796686 -47460844 - B2_Mm2 SINE B2 -1 194 47 4 1148 360 0 0 0 chr12 73796726 73796766 -47460764 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 4 1148 1067 89 6 6 chr12 73796766 73796925 -47460605 - B2_Mm1t SINE B2 -33 160 2 4 1148 1159 42 7 7 chr12 73797165 73797310 -47460220 - B1_Mus2 SINE Alu 0 147 3 5 1148 984 218 0 0 chr12 73797884 73798072 -47459458 - B3 SINE B2 -5 211 24 5 1148 298 53 0 0 chr12 73798293 73798331 -47459199 + RMER6D LTR ERVK 1 38 -682 5 1148 231 36 0 0 chr12 73798348 73798376 -47459154 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1148 356 274 7 88 chr12 73798439 73798575 -47458955 - B3A SINE B2 -15 183 59 5 1148 738 157 0 0 chr12 73798614 73798754 -47458776 + CT-rich Low_complexity Low_complexity 3 142 0 5 1148 257 278 0 0 chr12 73798759 73798824 -47458706 - ID4 SINE ID -16 67 3 5 1148 283 319 32 91 chr12 73799598 73799784 -47457746 + MIR SINE MIR 64 238 -24 5 1148 1443 63 26 0 chr12 73800369 73800558 -47456972 + B2_Mm2 SINE B2 1 194 -1 5 1148 764 133 8 15 chr12 73800634 73800764 -47456766 + B3 SINE B2 2 130 -86 5 1148 631 83 19 0 chr12 73800812 73800920 -47456610 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 5 1148 291 71 0 0 chr12 73801582 73801624 -47455906 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1148 1158 62 7 0 chr12 73801633 73801778 -47455752 - B1_Mm SINE Alu 0 147 2 5 1148 666 143 151 0 chr12 73802685 73802804 -47454726 - B1_Mur2 SINE Alu -7 142 6 5 1148 180 53 51 26 chr12 73803231 73803270 -47454260 + (TTG)n Simple_repeat Simple_repeat 3 42 0 5 1148 988 269 107 54 chr12 73803292 73803814 -47453716 - Lx9 LINE L1 -20 7624 7075 5 1148 228 167 0 0 chr12 73804334 73804376 -47453154 - MTEb LTR MaLR -10 369 328 5 1148 399 346 23 0 chr12 73804378 73804511 -47453019 + RSINE1 SINE B4 3 138 -27 5 1148 342 0 0 0 chr12 73804519 73804557 -47452973 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1148 933 282 46 15 chr12 73804566 73804890 -47452640 - MTEb LTR MaLR -45 334 1 5 1148 355 255 68 14 chr12 73805010 73805157 -47452373 + L1ME3B LINE L1 5910 6064 -176 5 1148 322 99 83 47 chr12 73805323 73805492 -47452038 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 5 1148 268 126 60 53 chr12 73805529 73805680 -47451850 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 5 1148 273 178 0 0 chr12 73805709 73805754 -47451776 - ID4 SINE ID -34 49 5 5 1148 1189 61 0 0 chr12 73805918 73806065 -47451465 + B1_Mus2 SINE Alu 1 147 0 5 1148 1040 98 105 44 chr12 73806079 73806260 -47451270 + B2_Mm2 SINE B2 1 192 -3 5 1148 477 0 0 0 chr12 73806268 73806321 -47451209 + (ATATG)n Simple_repeat Simple_repeat 1 53 0 5 1148 2854 76 42 5 chr12 73806630 73807012 -47450518 - MTA_Mm LTR MaLR 0 396 1 5 1148 871 203 33 38 chr12 73807231 73807441 -47450089 + ORR1C2 LTR MaLR 172 380 -4 5 1148 238 247 27 0 chr12 73807512 73807585 -47449945 + L1MD LINE L1 5176 5250 -896 5 1148 291 140 0 0 chr12 73807589 73807639 -47449891 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1148 489 301 99 35 chr12 73807687 73807969 -47449561 - L1MA4A LINE L1 -414 5889 5590 5 1148 240 120 0 242 chr12 73807977 73808017 -47449513 - ORR1C2 LTR MaLR 0 384 351 5 1148 1117 72 0 0 chr12 73808017 73808155 -47449375 + B1_Mus1 SINE Alu 5 142 -6 5 1148 402 21 0 0 chr12 73808159 73808206 -47449324 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1148 240 120 0 242 chr12 73808206 73808226 -47449304 - ORR1C2 LTR MaLR -34 350 335 5 1148 251 238 0 16 chr12 73808260 73808324 -47449206 - RMER6B LTR ERVK -31 430 368 5 1148 432 0 0 0 chr12 73808557 73808605 -47448925 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1148 348 370 0 0 chr12 73808675 73808821 -47448709 + (CA)n Simple_repeat Simple_repeat 1 146 0 5 1148 600 111 148 0 chr12 73808901 73809009 -47448521 - RMER4B LTR ERVK 0 585 462 5 1148 1345 220 91 0 chr12 73809008 73809349 -47448181 + RLTR18B LTR ERVK 141 512 0 5 1148 399 263 10 10 chr12 73809820 73809916 -47447614 + PB1D7 SINE Alu 19 114 -6 5 1148 1263 94 0 0 chr12 73809929 73810109 -47447421 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 1148 1148 111 0 6 chr12 73810117 73810298 -47447232 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1148 288 155 42 0 chr12 73810302 73810373 -47447157 + GA-rich Low_complexity Low_complexity 1 74 0 5 1148 314 299 15 207 chr12 73810376 73810574 -47446956 + B4A SINE B4 5 164 -128 5 1148 239 381 61 7 chr12 73810777 73810925 -47446605 - MIRb SINE MIR -111 157 2 5 1148 180 200 0 0 chr12 73811110 73811150 -47446380 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 5 1148 438 151 0 0 chr12 73811498 73811571 -47445959 - B1_Mur2 SINE Alu -55 94 22 5 1148 2682 161 60 40 chr12 73811633 73812152 -47445378 + RLTR24 LTR ERV1 1 529 0 5 1148 2588 93 180 0 chr12 73812693 73813144 -47444386 + RLTR47_MM LTR ERV1 1 532 0 5 1148 428 35 17 0 chr12 73813300 73813358 -47444172 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1148 286 346 30 23 chr12 73813484 73813617 -47443913 - B4A SINE B4 -158 134 1 5 1148 2935 156 53 14 chr12 73813902 73814486 -47443044 + RLTR25A LTR ERVK 1 607 -496 5 1148 361 162 0 14 chr12 73814487 73814556 -47442974 + RMER16 LTR ERVK 1 68 -465 5 1148 4603 108 25 9 chr12 73814556 73815229 -47442301 - RMER16-int LTR ERVK -4646 760 77 5 1148 333 0 0 0 chr12 73815229 73815266 -47442264 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 5 1148 1114 90 6 0 chr12 73815266 73815422 -47442108 - B2_Mm1t SINE B2 -35 158 2 5 1148 525 182 0 0 chr12 73815422 73815510 -47442020 - RMER16-int LTR ERVK -5318 88 1 5 1148 2358 167 74 107 chr12 73815510 73816061 -47441469 - RMER16 LTR ERVK 0 533 1 5 1148 1019 144 26 88 chr12 73816099 73816290 -47441240 + RLTR25A LTR ERVK 624 798 -230 5 1148 297 0 0 0 chr12 73816290 73816323 -47441207 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1148 518 0 16 0 chr12 73816323 73816384 -47441146 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1148 1019 178 15 31 chr12 73816384 73816516 -47441014 + RLTR25A LTR ERVK 799 836 -192 5 1148 1585 48 0 0 chr12 73816628 73816816 -47440714 - B2_Mm1t SINE B2 -5 188 1 5 1148 198 0 0 0 chr12 73816873 73816895 -47440635 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1148 248 86 83 167 chr12 73817859 73817943 -47439587 - B2_Mm1t SINE B2 0 195 119 5 1148 585 95 19 28 chr12 73818101 73818209 -47439321 + (CCCCCT)n Simple_repeat Simple_repeat 6 112 0 5 1148 507 144 33 11 chr12 73818604 73818695 -47438835 - RMER5 LTR ERV1 0 534 442 5 1148 595 154 19 0 chr12 73818682 73818786 -47438744 - B3 SINE B2 -108 108 3 5 1148 219 139 0 0 chr12 73818791 73818827 -47438703 + (CAT)n Simple_repeat Simple_repeat 2 37 0 5 1148 194 324 115 32 chr12 73818952 73819169 -47438361 + L2 LINE L2 2756 2990 -429 5 1148 378 0 0 0 chr12 73819476 73819518 -47438012 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1148 659 261 201 0 chr12 73819542 73819726 -47437804 + ID_B1 SINE B4 1 221 -3 5 1148 1334 105 11 0 chr12 73819747 73819938 -47437592 + B2_Mm1t SINE B2 1 193 0 5 1148 251 279 13 0 chr12 73819941 73820020 -47437510 + MER112 DNA MER1_type 90 169 -92 5 1148 324 0 0 0 chr12 73820020 73820056 -47437474 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1148 591 303 46 0 chr12 73820104 73820279 -47437251 + B3 SINE B2 1 183 -33 5 1148 423 0 0 0 chr12 73821220 73821267 -47436263 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1148 705 259 13 0 chr12 73821275 73821433 -47436097 - B3A SINE B2 -34 164 5 5 1148 813 83 140 0 chr12 73821700 73821864 -47435666 - B2_Mm2 SINE B2 0 216 3 5 1148 1162 57 0 0 chr12 73823325 73823465 -47434065 + B1_Mus2 SINE Alu 1 140 -7 5 1148 591 15 0 0 chr12 73823468 73823536 -47433994 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 5 1148 360 0 0 0 chr12 73823913 73823953 -47433577 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1148 2221 55 0 10 chr12 73823971 73824267 -47433263 + ORR1A2 LTR MaLR 35 327 0 5 1148 385 317 139 22 chr12 73824326 73824585 -47432945 - B4A SINE B4 0 292 4 5 1148 2236 131 22 144 chr12 73825642 73826106 -47431424 + MTB_Mm LTR MaLR 1 407 0 5 1148 638 109 10 0 chr12 73826489 73826590 -47430940 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 1148 903 148 139 26 chr12 73826788 73826982 -47430548 + B3 SINE B2 1 216 0 5 1148 1266 27 0 0 chr12 73827012 73827158 -47430372 + B1_Mm SINE Alu 2 147 0 5 1148 930 163 0 0 chr12 73827599 73827746 -47429784 - B1_Mur4 SINE Alu 0 150 4 5 1148 2031 129 25 43 chr12 73827746 73827824 -47429706 - RLTR11A2 LTR ERVK -2 525 454 5 1148 1600 27 27 0 chr12 73827824 73828009 -47429521 - B2_Mm1a SINE B2 -3 190 1 5 1148 2031 129 25 43 chr12 73828009 73828326 -47429204 - RLTR11A2 LTR ERVK -74 453 137 5 1148 207 0 0 0 chr12 73828333 73828356 -47429174 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1148 974 73 0 0 chr12 73828365 73828501 -47429029 - B1_Mm SINE Alu 0 147 12 5 1148 284 261 113 137 chr12 73828442 73828646 -47428884 - RLTR11A2 LTR ERVK -327 200 2 5 1148 638 147 0 18 chr12 73828950 73829061 -47428469 + B1_Mus2 SINE Alu 38 146 -1 5 1148 33 43 0 0 chr12 73829061 73829108 -47428422 + AT_rich Low_complexity Low_complexity 1 47 0 5 1148 756 220 96 0 chr12 73829509 73829686 -47427844 + B3 SINE B2 18 211 -5 5 1148 642 165 266 64 chr12 73829852 73830040 -47427490 + URR1A DNA MER1_type 1 226 0 5 1148 365 243 0 0 chr12 73830702 73830776 -47426754 + ID4 SINE ID 2 75 -8 5 1148 425 214 108 23 chr12 73830877 73831006 -47426524 + B1F2 SINE Alu 5 144 -5 5 1148 1859 150 17 20 chr12 73831039 73831393 -47426137 + ORR1B1 LTR MaLR 42 394 0 5 1148 311 231 0 0 chr12 73831393 73831454 -47426076 + B3A SINE B2 12 72 -126 5 1148 314 228 68 19 chr12 73831441 73831544 -47425986 + ORR1D2 LTR MaLR 220 327 -43 5 1148 411 242 102 26 chr12 73831551 73831726 -47425804 + B3 SINE B2 2 181 -14 5 1148 1124 48 7 33 chr12 73831792 73831943 -47425587 + B1_Mm SINE Alu 1 147 0 5 1148 636 135 15 29 chr12 73831945 73832066 -47425464 + GA-rich Low_complexity Low_complexity 4 122 0 6 1148 1319 17 11 33 chr12 73832066 73832250 -47425280 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6 1148 636 135 15 29 chr12 73832250 73832265 -47425265 + polypurine Low_complexity Low_complexity 123 137 0 6 1148 636 141 0 0 chr12 73833204 73833286 -47424244 + (T)n Simple_repeat Simple_repeat 1 82 0 6 1148 1197 41 14 0 chr12 73833286 73833431 -47424099 - B1_Mus2 SINE Alu 0 147 1 6 1148 636 141 0 0 chr12 73833431 73833476 -47424054 + (T)n Simple_repeat Simple_repeat 1 45 0 6 1148 1161 62 7 0 chr12 73833478 73833623 -47423907 - B1_Mus2 SINE Alu 0 147 2 6 1148 1218 186 215 0 chr12 73833632 73833943 -47423587 - Lx9 LINE L1 -107 7537 7160 6 1148 600 231 89 43 chr12 73834004 73834284 -47423246 - RLTR15 LTR ERVK -65 294 2 6 1148 357 167 0 0 chr12 73834289 73834349 -47423181 - Lx9 LINE L1 -486 7158 7099 6 1148 888 51 0 0 chr12 73834353 73834470 -47423060 - B1_Mus2 SINE Alu -30 117 1 6 1148 511 140 0 123 chr12 73834358 73834488 -47423042 - MT2B LTR ERVL -337 264 151 6 1148 2102 151 27 3 chr12 73834511 73834883 -47422647 + ORR1B1 LTR MaLR 2 382 -12 6 1148 445 220 3 0 chr12 73834896 73834985 -47422545 + B1_Mur3 SINE Alu 2 92 -28 6 1148 346 268 53 30 chr12 73834985 73835116 -47422414 - RLTR41 LTR ERV1 0 446 313 6 1148 943 76 0 0 chr12 73835634 73835765 -47421765 - B1_Mus1 SINE Alu 0 148 18 6 1148 703 167 235 24 chr12 73835792 73835958 -47421572 - B3 SINE B2 -14 202 2 6 1148 320 0 0 24 chr12 73835965 73836006 -47421524 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 6 1148 888 143 0 8 chr12 73836006 73836140 -47421390 - B1_Mus2 SINE Alu -13 134 2 6 1148 427 75 0 69 chr12 73836250 73836322 -47421208 + RMER19B LTR ERVK 316 382 -520 6 1148 322 61 0 0 chr12 73836425 73836474 -47421056 + Lx3_Mus LINE L1 6957 7005 -4 6 1148 252 152 22 0 chr12 73836474 73836520 -47421010 - Lx9 LINE L1 -266 7378 7332 6 1148 3157 106 104 0 chr12 73836526 73837066 -47420464 + MT2B LTR ERVL 1 596 -5 6 1148 1017 142 6 17 chr12 73837202 73837220 -47420310 - B2_Mm2 SINE B2 -17 178 161 6 1148 264 59 0 0 chr12 73837220 73837254 -47420276 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 6 1148 1017 142 6 17 chr12 73837254 73837414 -47420116 - B2_Mm2 SINE B2 -35 160 3 6 1148 273 75 0 0 chr12 73837602 73837642 -47419888 - B2_Mm2 SINE B2 -155 40 1 6 1148 986 265 94 34 chr12 73837680 73838204 -47419326 - L1M2 LINE L1 -1120 5020 4471 6 1148 1057 49 0 0 chr12 73838204 73838346 -47419184 - B1_Mus2 SINE Alu 0 147 6 6 1148 477 225 142 0 chr12 73838426 73838546 -47418984 - B1_Mus1 SINE Alu 0 148 12 6 1148 327 256 81 0 chr12 73838470 73838556 -47418974 - MT2B LTR ERVL -344 257 165 6 1148 750 102 148 0 chr12 73838629 73838757 -47418773 - B1_Mm SINE Alu 0 147 1 6 1148 282 279 93 28 chr12 73838894 73839001 -47418529 - PB1D9 SINE Alu -1 119 6 6 1148 224 282 13 53 chr12 73839217 73839292 -47418238 + B1_Mur4 SINE Alu 3 74 -76 6 1148 493 212 29 10 chr12 73839227 73839346 -47418184 - B1_Mus1 SINE Alu -52 96 6 6 1148 459 224 69 7 chr12 73839430 73839574 -47417956 - RMER17C LTR ERVK -257 153 1 6 1148 505 235 44 63 chr12 73839912 73840136 -47417394 - BGLII_B LTR ERVK -202 220 7 6 1148 688 238 36 88 chr12 73840136 73840202 -47417328 - MYSERV6-int LTR ERVK -9 6541 6483 6 1148 1361 228 141 17 chr12 73840202 73840671 -47416859 + RLTR11A2 LTR ERVK 1 527 0 6 1148 696 232 52 56 chr12 73840671 73840822 -47416708 - MYSERV6-int LTR ERVK -62 8897 8768 6 1148 1312 84 5 21 chr12 73840822 73841016 -47416514 - B2_Mm1t SINE B2 0 193 3 6 1148 696 231 55 50 chr12 73841016 73841105 -47416425 - MYSERV6-int LTR ERVK -192 8767 8679 6 1148 397 312 46 0 chr12 73841335 73841444 -47416086 - B1_Mur1 SINE Alu -34 115 2 6 1148 373 35 52 0 chr12 73841470 73841528 -47416002 + (TTTTTG)n Simple_repeat Simple_repeat 3 63 0 6 1148 1227 139 37 0 chr12 73841773 73841988 -47415542 - ORR1B2 LTR MaLR 0 367 145 6 1148 916 47 0 30 chr12 73842962 73843093 -47414437 + B1_Mm SINE Alu 1 127 -20 6 1148 1393 89 11 5 chr12 73843148 73843339 -47414191 + B2_Mm1t SINE B2 1 192 -1 6 1148 306 125 0 0 chr12 73843339 73843387 -47414143 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 6 1148 221 316 0 30 chr12 73843484 73843585 -47413945 + G-rich Low_complexity Low_complexity 4 101 0 6 1148 661 109 18 18 chr12 73844170 73844282 -47413248 + PB1D9 SINE Alu 9 120 0 6 1148 24 0 0 0 chr12 73844282 73844306 -47413224 + AT_rich Low_complexity Low_complexity 1 24 0 6 1148 1205 48 0 0 chr12 73844351 73844498 -47413032 - B1_Mus2 SINE Alu 0 147 1 6 1148 1551 201 41 41 chr12 73844782 73845172 -47412358 - RMER10B LTR ERVL -8 390 1 6 1148 315 167 90 40 chr12 73845175 73845275 -47412255 + ID_B1 SINE B4 82 186 -38 6 1148 318 256 38 34 chr12 73845275 73845390 -47412140 + L1MA5 LINE L1 5813 5935 -368 6 1148 290 253 167 85 chr12 73846570 73846924 -47410606 + RMER10A LTR ERVL 18 400 -42 6 1148 23 54 0 0 chr12 73847039 73847076 -47410454 + AT_rich Low_complexity Low_complexity 1 37 0 6 1148 1354 74 21 21 chr12 73847530 73847724 -47409806 + B2_Mm2 SINE B2 2 195 0 6 1148 782 236 46 149 chr12 73848182 73848280 -47409250 + B4A SINE B4 1 89 -203 6 1148 498 171 14 116 chr12 73848280 73848426 -47409104 + B1_Mur1 SINE Alu 2 132 -17 6 1148 782 236 46 149 chr12 73848426 73848650 -47408880 + B4A SINE B4 90 290 -2 6 1148 226 245 0 0 chr12 73848667 73848716 -47408814 + GA-rich Low_complexity Low_complexity 2 50 0 6 1148 690 168 0 0 chr12 73848762 73848875 -47408655 + B3 SINE B2 3 115 -101 6 1148 1151 34 0 76 chr12 73848880 73848891 -47408639 - B1_Mm SINE Alu 0 147 139 6 1148 197 65 0 31 chr12 73848891 73848923 -47408607 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1148 1151 34 0 76 chr12 73848923 73849069 -47408461 - B1_Mm SINE Alu -9 138 2 6 1148 1508 21 0 104 chr12 73849087 73849299 -47408231 - B2_Mm1t SINE B2 -3 190 1 6 1148 503 300 12 59 chr12 73849655 73849825 -47407705 - RSINE1 SINE B4 0 165 4 6 1148 414 0 0 0 chr12 73850158 73850204 -47407326 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1148 497 224 39 23 chr12 73850646 73850774 -47406756 - B1F1 SINE Alu -2 147 18 6 1148 182 37 37 0 chr12 73850881 73850908 -47406622 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1148 217 222 0 14 chr12 73851492 73851551 -47405979 + A-rich Low_complexity Low_complexity 1 58 0 6 1148 225 0 0 0 chr12 73851551 73851576 -47405954 + (CCA)n Simple_repeat Simple_repeat 1 25 0 6 1148 217 222 0 14 chr12 73851576 73851589 -47405941 + A-rich Low_complexity Low_complexity 59 71 0 6 1148 225 306 111 64 chr12 73851636 73851950 -47405580 + L2a LINE L2 2929 3251 -124 6 1148 209 315 98 0 chr12 73852362 73852457 -47405073 - MIRc SINE MIR -120 156 48 6 1148 308 227 0 11 chr12 73853297 73853386 -47404144 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 1148 1213 35 14 0 chr12 73853525 73853670 -47403860 - B1_Mm SINE Alu 0 147 1 6 1148 576 239 28 28 chr12 73853677 73853819 -47403711 - B1_Mm SINE Alu -5 142 1 6 1148 565 194 41 88 chr12 73854271 73854418 -47403112 + B1_Mur2 SINE Alu 1 140 -9 6 1148 857 140 15 0 chr12 73854976 73855112 -47402418 + B1_Mus1 SINE Alu 3 140 -8 6 1148 1039 105 7 0 chr12 73855130 73855282 -47402248 + RMER6C LTR ERVK 15 167 -553 6 1148 1235 175 51 28 chr12 73855375 73855628 -47401902 + RMER6C LTR ERVK 432 690 0 6 1148 2351 77 12 61 chr12 73855630 73855974 -47401556 - ORR1A2 LTR MaLR 0 327 1 6 1148 24 0 0 0 chr12 73856203 73856227 -47401303 + AT_rich Low_complexity Low_complexity 1 24 0 6 1148 515 199 155 67 chr12 73856436 73856630 -47400900 + B3 SINE B2 2 212 -4 6 1148 443 195 219 41 chr12 73856630 73856752 -47400778 + B1_Mur3 SINE Alu 1 145 -4 6 1148 230 304 43 21 chr12 73857363 73857457 -47400073 + MIRc SINE MIR 88 183 -85 6 1148 557 225 0 66 chr12 73857711 73857863 -47399667 + B4A SINE B4 2 143 -149 6 1148 215 317 54 25 chr12 73857941 73858143 -47399387 + L2b LINE L2 3191 3392 -34 6 1148 249 292 0 22 chr12 73858544 73858635 -47398895 + A-rich Low_complexity Low_complexity 4 92 0 6 1148 899 134 28 0 chr12 73859070 73859212 -47398318 - B1_Mur4 SINE Alu 0 150 5 6 1148 261 0 0 0 chr12 73859352 73859381 -47398149 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1148 319 192 123 0 chr12 73859535 73859608 -47397922 + PB1D7 SINE Alu 8 89 -31 6 1148 231 234 156 0 chr12 73860310 73860387 -47397143 + ID_B1 SINE B4 121 209 -15 6 1148 469 235 43 0 chr12 73860506 73860621 -47396909 + PB1D9 SINE Alu 1 120 0 6 1148 201 94 0 0 chr12 73862173 73862205 -47395325 + (CGGGG)n Simple_repeat Simple_repeat 1 32 0 6 1148 36 87 0 0 chr12 73862518 73862610 -47394920 + GC_rich Low_complexity Low_complexity 1 92 0 6 1148 197 204 40 20 chr12 73863678 73863728 -47393802 - MIRc SINE MIR -114 154 104 6 1148 192 77 0 0 chr12 73865482 73865508 -47392022 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1148 1040 60 75 0 chr12 73865511 73865644 -47391886 - B1_Mus2 SINE Alu -4 143 1 6 1148 766 191 14 47 chr12 73865651 73865799 -47391731 - B1_Mur1 SINE Alu -6 143 1 6 1148 258 32 0 0 chr12 73865835 73865866 -47391664 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 6 1148 775 142 128 0 chr12 73865979 73866127 -47391403 - B2_Mm2 SINE B2 -27 168 2 6 1148 225 94 0 0 chr12 73866205 73866237 -47391293 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1148 478 250 73 73 chr12 73866237 73866388 -47391142 + B3 SINE B2 42 192 -24 6 1148 300 27 0 0 chr12 73866420 73866457 -47391073 + (CATA)n Simple_repeat Simple_repeat 2 38 0 6 1148 1157 132 10 35 chr12 73866524 73866721 -47390809 - B2_Mm1a SINE B2 0 193 2 6 1148 553 106 42 11 chr12 73866972 73867067 -47390463 + B1_Mur4 SINE Alu 53 150 0 7 1148 526 260 126 0 chr12 73867165 73867388 -47390142 + MER2 DNA MER2_type 25 275 -70 7 1148 1848 129 27 12 chr12 73867654 73867984 -47389546 - RLTR15 LTR ERVK -16 343 9 7 1148 442 163 11 44 chr12 73868416 73868506 -47389024 + B1_Mur1 SINE Alu 58 144 -5 7 1148 1273 84 51 0 chr12 73868611 73868789 -47388741 + B2_Mm2 SINE B2 4 190 -5 7 1148 2831 181 201 81 chr12 73870245 73871062 -47386468 - RMER1A Other Other 0 1030 116 7 1148 405 0 0 0 chr12 73871259 73871304 -47386226 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1148 288 0 0 0 chr12 73871304 73871335 -47386195 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1148 833 101 67 1 chr12 73872297 73872457 -47385073 - B2_Mm2 SINE B2 -15 201 2 7 1148 1309 102 27 0 chr12 73873428 73873615 -47383915 + B2_Mm1a SINE B2 2 193 0 7 1148 708 62 0 0 chr12 73874493 73874590 -47382940 - B1_Mus2 SINE Alu 0 147 51 7 1148 367 73 0 0 chr12 73874587 73874642 -47382888 + B1_Mur4 SINE Alu 96 150 0 7 1148 526 152 163 0 chr12 73875244 73875360 -47382170 + B1_Mur1 SINE Alu 1 134 -16 7 1148 352 143 444 15 chr12 73875766 73875906 -47381624 - B3 SINE B2 -8 208 10 7 1148 795 60 8 41 chr12 73876062 73876183 -47381347 - B1_Mus2 SINE Alu -30 117 1 7 1148 474 106 106 0 chr12 73876561 73876646 -47380884 + B2_Mm1t SINE B2 3 96 -97 7 1148 233 236 32 43 chr12 73876678 73876771 -47380759 + L1M LINE L1 5328 5419 -705 7 1148 381 237 10 31 chr12 73876794 73876890 -47380640 - B3 SINE B2 -11 205 112 7 1148 352 113 0 0 chr12 73877279 73877332 -47380198 - B3 SINE B2 -97 119 67 7 1148 623 119 58 1 chr12 73877482 73877607 -47379923 + B1_Mm SINE Alu 1 133 -16 7 1148 1443 41 41 0 chr12 73877915 73878086 -47379444 - B2_Mm1t SINE B2 -14 179 2 7 1148 21 0 0 0 chr12 73878091 73878112 -47379418 + AT_rich Low_complexity Low_complexity 1 21 0 7 1148 532 50 460 0 chr12 73878113 73878213 -47379317 - B1_Mus1 SINE Alu -2 146 1 7 1148 206 295 0 16 chr12 73880460 73880522 -47377008 - MIRb SINE MIR -83 185 125 7 1148 719 188 22 0 chr12 73880820 73880958 -47376572 - B1_Mur4 SINE Alu 0 150 10 7 1148 375 78 0 0 chr12 73882022 73882073 -47375457 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1148 571 217 9 0 chr12 73882305 73882411 -47375119 + PB1D9 SINE Alu 1 107 -13 7 1148 214 352 47 39 chr12 73882453 73882580 -47374950 - MIRb SINE MIR -116 152 25 7 1148 1031 118 43 118 chr12 73883900 73884069 -47373461 - B2_Mm2 SINE B2 0 195 31 7 1148 1466 57 5 20 chr12 73884069 73884265 -47373265 - B2_Mm1a SINE B2 0 193 1 7 1148 1031 118 43 118 chr12 73884265 73884306 -47373224 - B2_Mm2 SINE B2 -165 30 1 7 1148 261 0 0 0 chr12 73885712 73885741 -47371789 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1148 722 125 28 49 chr12 73885750 73885893 -47371637 - B2_Mm2 SINE B2 -55 140 1 7 1148 25 65 0 0 chr12 73887103 73887149 -47370381 + AT_rich Low_complexity Low_complexity 1 46 0 7 1148 622 133 38 9 chr12 73887162 73887268 -47370262 + B1_Mus2 SINE Alu 2 110 -37 7 1148 189 0 0 0 chr12 73888382 73888403 -47369127 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1148 204 235 0 0 chr12 73892438 73892506 -47365024 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1148 228 35 0 0 chr12 73892559 73892588 -47364942 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1148 313 252 35 61 chr12 73892604 73892718 -47364812 - PB1D10 SINE Alu 0 117 7 7 1148 27 0 0 0 chr12 73892726 73892753 -47364777 + AT_rich Low_complexity Low_complexity 1 27 0 7 1148 402 308 77 51 chr12 73893021 73893216 -47364314 - B4A SINE B4 0 292 93 7 1148 180 0 0 0 chr12 73893260 73893280 -47364250 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1148 194 0 0 37 chr12 73893315 73893342 -47364188 + (TCTCCC)n Simple_repeat Simple_repeat 3 28 0 7 1148 344 276 103 24 chr12 73893360 73893486 -47364044 + RSINE1 SINE B4 18 153 -12 7 1148 513 111 60 10 chr12 73897154 73897254 -47360276 + PB1D9 SINE Alu 3 107 -13 7 1148 424 265 20 0 chr12 73897381 73897483 -47360047 + PB1D10 SINE Alu 1 104 -13 7 1148 231 36 0 0 chr12 73898871 73898899 -47358631 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1148 493 195 221 0 chr12 73898905 73899018 -47358512 + B1_Mus1 SINE Alu 1 138 -10 7 1148 205 219 0 40 chr12 73901151 73901227 -47356303 + (TGGG)n Simple_repeat Simple_repeat 1 73 0 7 1148 305 226 138 11 chr12 73902122 73902216 -47355314 + RSINE1 SINE B4 12 117 -48 7 1148 231 233 82 0 chr12 73902435 73902508 -47355022 + RSINE1 SINE B4 87 165 0 7 1148 1437 196 160 8 chr12 73902529 73902910 -47354620 + RMER10A LTR ERVL 4 442 0 7 1148 1315 90 25 36 chr12 73902957 73903109 -47354421 + B2_Mm2 SINE B2 2 153 -42 7 1148 234 0 0 0 chr12 73903109 73903135 -47354395 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1148 1315 90 25 36 chr12 73903135 73903178 -47354352 + B2_Mm2 SINE B2 154 195 0 7 1148 588 128 89 6 chr12 73903654 73903767 -47353763 - B1_Mur3 SINE Alu 0 149 34 7 1148 183 42 0 0 chr12 73904610 73904634 -47352896 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 7 1148 749 118 118 0 chr12 73904744 73904880 -47352650 - B2_Mm1t SINE B2 -41 152 1 7 1148 503 224 68 8 chr12 73905487 73905604 -47351926 - B1_Mur1 SINE Alu -18 131 8 7 1148 387 286 60 54 chr12 73905639 73905824 -47351706 - RMER4A LTR ERVK -30 436 251 7 1148 1553 252 78 129 chr12 73905824 73905979 -47351551 - MYSERV16_I-int LTR ERVK -1424 5126 4992 7 1148 1068 90 0 27 chr12 73905979 73906128 -47351402 + B1_Mus1 SINE Alu 1 145 -3 7 1148 711 0 0 0 chr12 73906133 73906212 -47351318 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1148 1564 248 112 52 chr12 73906212 73906865 -47350665 - MYSERV16_I-int LTR ERVK -1586 740 63 7 1148 1092 142 0 0 chr12 73906865 73907041 -47350489 + MTB LTR MaLR 6 181 -219 7 1148 549 0 0 0 chr12 73907149 73907210 -47350320 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1148 1484 62 9 5 chr12 73907214 73907426 -47350104 + MTB LTR MaLR 188 400 0 7 1148 1659 262 62 40 chr12 73907447 73907975 -47349555 - MYSERV-int LTR ERVK -2226 4324 3785 7 1148 270 181 105 53 chr12 73908694 73908770 -47348760 - B4A SINE B4 -212 80 1 7 1148 467 283 166 34 chr12 73909137 73909342 -47348188 + B4A SINE B4 2 233 -59 7 1148 215 152 22 0 chr12 73909420 73909466 -47348064 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1148 708 156 16 16 chr12 73909475 73909599 -47347931 - ORR1B1 LTR MaLR -8 359 236 7 1148 1142 68 0 7 chr12 73909603 73909750 -47347780 - B1_Mm SINE Alu 0 147 2 7 1148 1651 209 189 55 chr12 73909756 73910509 -47347021 + RMER6C LTR ERVK 5 720 0 7 1148 1074 51 0 55 chr12 73910509 73910655 -47346875 + B1_Mus1 SINE Alu 3 140 -8 7 1148 1179 152 46 42 chr12 73910667 73910714 -47346816 - ORR1B1 LTR MaLR -132 262 225 7 1148 1437 75 21 0 chr12 73910714 73910902 -47346628 - B2_Mm2 SINE B2 -1 194 3 7 1148 1179 152 46 42 chr12 73910902 73911115 -47346415 - ORR1B1 LTR MaLR -170 224 1 7 1148 250 209 43 29 chr12 73911180 73911249 -47346281 + ORR1D2 LTR MaLR 1 70 -300 7 1148 244 230 124 48 chr12 73911529 73911634 -47345896 + RLTR14 LTR ERV1 225 337 -45 7 1148 789 310 69 50 chr12 73911659 73912063 -47345467 + RLTR14-int LTR ERV1 2 413 -4904 7 1148 1457 108 257 41 chr12 73912066 73912321 -47345209 - MTC LTR MaLR -8 413 78 7 1148 1283 115 11 5 chr12 73912321 73912505 -47345025 - B2_Mm2 SINE B2 -9 186 2 7 1148 1457 108 257 41 chr12 73912505 73912588 -47344942 - MTC LTR MaLR -344 77 2 7 1148 302 220 37 74 chr12 73912859 73912967 -47344563 + RLTR14-int LTR ERV1 469 572 -4745 7 1148 1099 83 0 13 chr12 73913350 73913509 -47344021 + B2_Mm2 SINE B2 2 158 -37 7 1148 315 0 0 0 chr12 73913513 73913548 -47343982 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 7 1148 345 24 0 0 chr12 73913650 73913692 -47343838 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1148 264 380 62 36 chr12 73914171 73914447 -47343083 + RLTR14-int LTR ERV1 1758 2040 -3277 7 1148 742 328 89 63 chr12 73914470 73915386 -47342144 + RLTR14-int LTR ERV1 3437 4473 -3133 7 1148 1090 298 45 53 chr12 73916199 73916691 -47340839 + RLTR14-int LTR ERV1 4830 5317 0 7 1148 1713 155 29 88 chr12 73916753 73917129 -47340401 - ORR1B1 LTR MaLR 0 394 41 7 1148 398 268 58 63 chr12 73917278 73917485 -47340045 + RLTR14 LTR ERV1 162 367 -15 7 1148 721 249 88 17 chr12 73917502 73917768 -47339762 + ORR1D2 LTR MaLR 60 357 -2 7 1148 567 0 0 0 chr12 73918474 73918537 -47338993 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 7 1148 189 107 0 0 chr12 73918538 73918566 -47338964 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1148 701 102 9 0 chr12 73920245 73920353 -47337177 + (TTTC)n Simple_repeat Simple_repeat 4 112 0 7 1148 1529 58 0 10 chr12 73920356 73920548 -47336982 - B2_Mm2 SINE B2 -4 191 2 7 1148 364 273 131 58 chr12 73920637 73920843 -47336687 - RLTR21 LTR ERVK 0 1572 1352 7 1148 271 295 13 0 chr12 73921493 73921571 -47335959 + ID4_ SINE ID 3 81 -2 7 1148 207 100 0 0 chr12 73921615 73921645 -47335885 + (GGA)n Simple_repeat Simple_repeat 2 31 0 7 1148 318 50 0 0 chr12 73921645 73921685 -47335845 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1148 214 351 13 0 chr12 73921744 73921821 -47335709 - MIR SINE MIR -175 87 10 7 1148 27 0 0 0 chr12 73922353 73922380 -47335150 + GC_rich Low_complexity Low_complexity 1 27 0 7 1148 383 314 102 52 chr12 73922948 73923291 -47334239 - RMER5 LTR ERV1 -30 504 145 7 1148 244 328 0 0 chr12 73923716 73923774 -47333756 - MamGypLTR2c LTR Gypsy -273 795 738 7 1148 303 234 0 58 chr12 73924213 73924299 -47333231 + ID4_ SINE ID 2 82 -1 7 1148 889 147 0 40 chr12 73924312 73924461 -47333069 + B1_Mm SINE Alu 5 147 0 7 1148 201 74 0 0 chr12 73924462 73924489 -47333041 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1149 324 70 0 0 chr12 73924767 73924810 -47332720 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1149 188 86 29 0 chr12 73924813 73924848 -47332682 + (CAGAGA)n Simple_repeat Simple_repeat 4 39 0 7 1149 276 30 0 0 chr12 73925071 73925104 -47332426 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 7 1149 718 95 0 28 chr12 73925104 73925244 -47332286 + (TATG)n Simple_repeat Simple_repeat 2 138 0 7 1149 403 228 83 21 chr12 73925343 73925498 -47332032 - MER58B DNA MER1_type -24 317 148 7 1149 966 243 9 5 chr12 73925581 73925792 -47331738 - B3 SINE B2 0 216 5 8 1149 576 12 98 0 chr12 73926169 73926251 -47331279 - B1_Mus1 SINE Alu -31 117 28 8 1149 240 370 104 0 chr12 73927565 73927738 -47329792 + MIRb SINE MIR 25 215 -53 8 1149 351 0 0 0 chr12 73927753 73927792 -47329738 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1149 247 259 0 18 chr12 73927804 73927859 -47329671 - ID SINE ID -150 74 21 8 1149 643 162 7 14 chr12 73927887 73928025 -47329505 + CT-rich Low_complexity Low_complexity 4 140 0 8 1149 942 258 24 0 chr12 73928025 73928238 -47329292 - ID_B1 SINE B4 0 224 7 8 1149 280 244 158 0 chr12 73928451 73928533 -47328997 - Lx8 LINE L1 -301 7172 7078 8 1149 284 334 43 43 chr12 73928909 73929213 -47328317 + MTE2a LTR MaLR 64 370 0 8 1149 514 203 106 30 chr12 73929752 73929884 -47327646 - B1_Mur4 SINE Alu 0 150 9 8 1149 289 253 25 12 chr12 73929967 73930047 -47327483 - ID4 SINE ID -1 82 2 8 1149 585 227 142 0 chr12 73930524 73930700 -47326830 - ID_B1 SINE B4 -23 201 1 8 1149 2416 101 5 15 chr12 73930761 73931164 -47326366 - RMER17A2 LTR ERVK 0 906 508 8 1149 696 206 0 46 chr12 73931761 73931914 -47325616 + B1F SINE Alu 4 149 0 8 1149 1207 41 14 0 chr12 73932108 73932253 -47325277 + B1_Mm SINE Alu 1 147 0 8 1149 189 0 0 0 chr12 73932262 73932283 -47325247 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 8 1149 236 28 56 0 chr12 73932500 73932536 -47324994 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 8 1149 21 36 0 0 chr12 73933042 73933070 -47324460 + GC_rich Low_complexity Low_complexity 1 28 0 8 1149 201 74 0 0 chr12 73934181 73934208 -47323322 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1149 719 179 0 22 chr12 73934208 73934345 -47323185 - B1_Mur2 SINE Alu 0 149 16 8 1149 421 259 63 21 chr12 73934653 73934795 -47322735 - B1F2 SINE Alu -1 148 1 8 1149 235 259 39 87 chr12 73935357 73935368 -47322162 - RSINE1 SINE B4 -29 136 126 8 1149 243 0 0 0 chr12 73935368 73935395 -47322135 + (TTG)n Simple_repeat Simple_repeat 3 29 0 8 1149 558 63 0 0 chr12 73935402 73935481 -47322049 + (TG)n Simple_repeat Simple_repeat 1 79 0 8 1149 235 259 39 87 chr12 73935481 73935588 -47321942 - RSINE1 SINE B4 -46 119 16 8 1149 316 276 8 103 chr12 73936884 73937001 -47320529 + RSINE1 SINE B4 3 108 -57 8 1149 378 0 0 0 chr12 73937903 73937945 -47319585 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1149 283 267 0 0 chr12 73937945 73938005 -47319525 - ID2 SINE ID -11 72 13 8 1149 259 317 56 77 chr12 73938886 73938946 -47318584 + MIR SINE MIR 69 129 -133 8 1149 243 0 0 0 chr12 73938946 73938973 -47318557 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1149 259 317 56 77 chr12 73938973 73939107 -47318423 + MIR SINE MIR 130 259 -3 8 1149 237 238 138 62 chr12 73939228 73939358 -47318172 + RMER30 DNA MER1_type 2 141 -61 8 1149 241 272 82 47 chr12 73940031 73940116 -47317414 + RSINE1 SINE B4 13 100 -65 8 1149 462 36 0 0 chr12 73940118 73940174 -47317356 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1149 1893 135 9 12 chr12 73940225 73940548 -47316982 + ORR1B1 LTR MaLR 72 393 -1 8 1149 675 226 89 5 chr12 73940574 73940787 -47316743 + L1M2 LINE L1 3500 3730 -2413 8 1149 387 91 15 15 chr12 73940787 73940854 -47316676 - ORR1B1 LTR MaLR -327 67 1 8 1149 510 259 146 56 chr12 73940855 73941211 -47316319 - L1_Mur3 LINE L1 -2446 3434 3047 8 1149 358 292 139 0 chr12 73941501 73941645 -47315885 + B4A SINE B4 1 164 -128 8 1149 517 222 28 0 chr12 73941645 73941753 -47315777 - B3A SINE B2 -38 160 50 8 1149 488 181 28 19 chr12 73941827 73941934 -47315596 + B1_Mur2 SINE Alu 42 149 0 8 1149 1394 86 38 0 chr12 73941962 73942148 -47315382 + B2_Mm2 SINE B2 1 193 -2 8 1149 1796 273 155 40 chr12 73942282 73943244 -47314286 + Lx8 LINE L1 6191 7263 -210 8 1149 1684 199 68 20 chr12 73943244 73943597 -47313933 - ORR1D2 LTR MaLR 0 370 1 8 1149 207 0 0 0 chr12 73943877 73943900 -47313630 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1149 666 250 65 27 chr12 73944247 73944432 -47313098 - B3A SINE B2 0 198 7 8 1149 310 339 25 8 chr12 73944590 73944709 -47312821 + MER5A1 DNA MER1_type 46 166 0 8 1149 271 257 14 14 chr12 73944997 73945068 -47312462 - tRNA-Ala-GCA tRNA tRNA -3 72 2 8 1149 359 243 174 19 chr12 73945983 73946138 -47311392 + MIR SINE MIR 65 243 -19 8 1149 367 329 6 75 chr12 73946182 73946343 -47311187 + B4A SINE B4 2 151 -141 8 1149 251 316 40 20 chr12 73946333 73946433 -47311097 + RSINE1 SINE B4 64 165 0 8 1149 191 61 30 0 chr12 73946449 73946482 -47311048 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1149 714 24 0 0 chr12 73946709 73946793 -47310737 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 8 1149 348 103 0 0 chr12 73947843 73947901 -47309629 + (TC)n Simple_repeat Simple_repeat 2 59 0 8 1149 616 307 68 50 chr12 73947929 73948207 -47309323 - B4A SINE B4 -1 291 9 8 1149 936 112 136 34 chr12 73948228 73948404 -47309126 - B2_Mm2 SINE B2 0 195 2 8 1149 210 256 0 0 chr12 73948773 73948816 -47308714 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1149 860 199 90 6 chr12 73950428 73950605 -47306925 + B3 SINE B2 19 210 -6 8 1149 445 305 7 34 chr12 73952142 73952288 -47305242 - B1_Mur2 SINE Alu -6 143 2 8 1149 741 207 122 29 chr12 73952291 73952495 -47305035 + MER2 DNA MER2_type 120 342 -3 8 1149 477 217 14 14 chr12 73952513 73952658 -47304872 + CT-rich Low_complexity Low_complexity 2 146 0 8 1149 1148 84 0 0 chr12 73952667 73952810 -47304720 - B1_Mus1 SINE Alu -4 144 2 8 1149 687 25 0 0 chr12 73952820 73952901 -47304629 + (TCC)n Simple_repeat Simple_repeat 2 82 0 8 1149 305 193 0 17 chr12 73952903 73952961 -47304569 - PB1D7 SINE Alu -6 114 58 8 1149 218 205 0 0 chr12 73953125 73953164 -47304366 + T-rich Low_complexity Low_complexity 2 40 0 8 1149 29 47 0 0 chr12 73953862 73953905 -47303625 + AT_rich Low_complexity Low_complexity 1 43 0 8 1149 913 152 202 21 chr12 73954349 73954537 -47302993 + URR1A DNA MER1_type 1 222 -4 8 1149 244 354 42 42 chr12 73956013 73956131 -47301399 + RMER20B LTR ERVK 252 369 -258 8 1149 242 306 35 0 chr12 73956289 73956374 -47301156 + MLT1N2 LTR MaLR 387 474 -88 8 1149 468 300 63 73 chr12 73956426 73956631 -47300899 + MIR SINE MIR 14 216 -46 8 1149 459 0 0 0 chr12 73958010 73958061 -47299469 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1149 501 221 37 157 chr12 73958241 73958483 -47299047 - Lx8 LINE L1 -325 7148 6936 8 1149 801 0 0 0 chr12 73958770 73958859 -47298671 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 8 1149 591 197 61 38 chr12 73958859 73958991 -47298539 - B1_Mus2 SINE Alu -12 135 1 8 1149 205 182 0 0 chr12 73959003 73959036 -47298494 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1149 365 159 16 0 chr12 73959980 73960043 -47297487 - RLTR25A LTR ERVK 0 1028 965 8 1149 3996 173 55 43 chr12 73960082 73960878 -47296652 - RLTR25A LTR ERVK -256 847 42 8 1149 378 0 0 0 chr12 73960993 73961035 -47296495 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 8 1149 556 211 60 80 chr12 73961131 73961332 -47296198 - Lx5 LINE L1 0 7050 6854 8 1149 453 299 110 11 chr12 73961378 73961522 -47296008 + B4A SINE B4 133 286 -6 8 1149 261 119 0 0 chr12 73961564 73961606 -47295924 + (GGGAGA)n Simple_repeat Simple_repeat 4 45 0 8 1149 552 246 200 0 chr12 73961678 73961853 -47295677 - MLT1F2 LTR MaLR -278 282 73 8 1149 314 365 48 65 chr12 73961880 73962173 -47295357 - Arthur1 DNA Tip100 -3453 494 207 8 1149 352 300 87 10 chr12 73962443 73962743 -47294787 + L1M3 LINE L1 2288 2610 -3536 8 1149 248 233 13 76 chr12 73962747 73962826 -47294704 + B3 SINE B2 7 80 -136 8 1149 720 276 124 47 chr12 73962756 73963014 -47294516 + B4A SINE B4 12 289 -3 8 1149 657 258 126 11 chr12 73963085 73963442 -47294088 + L1M3 LINE L1 2639 3036 -3110 8 1149 838 253 51 0 chr12 73963448 73963626 -47293904 + B3 SINE B2 2 188 -28 8 1149 1743 251 125 69 chr12 73963659 73964766 -47292764 + L1M3 LINE L1 3071 4239 -1901 8 1149 347 261 0 7 chr12 73964782 73964917 -47292613 + (CA)n Simple_repeat Simple_repeat 1 134 0 8 1149 496 266 36 20 chr12 73964954 73965150 -47292380 + L1M3 LINE L1 4268 4466 -1674 8 1149 1072 66 0 0 chr12 73965150 73965287 -47292243 + B1_Mus1 SINE Alu 10 146 -2 8 1149 191 61 30 0 chr12 73965296 73965329 -47292201 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 8 1149 430 312 39 18 chr12 73965329 73965613 -47291917 + L1M3 LINE L1 4478 4767 -1379 8 1149 622 274 75 38 chr12 73965611 73966001 -47291529 + L1MB2 LINE L1 5715 6118 -50 8 1149 335 284 82 0 chr12 73966076 73966210 -47291320 - MER44D DNA MER2_type -98 607 464 8 1149 500 267 125 18 chr12 73966204 73966372 -47291158 - MER44D DNA MER2_type -512 193 8 8 1149 1065 87 0 0 chr12 73966402 73966540 -47290990 + B1_Mus1 SINE Alu 1 138 -10 8 1149 423 0 0 0 chr12 73966540 73966587 -47290943 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 8 1149 325 181 96 2 chr12 73967360 73967437 -47290093 + B1F2 SINE Alu 6 89 -60 8 1149 408 82 0 0 chr12 73967437 73967498 -47290032 + (TAA)n Simple_repeat Simple_repeat 2 62 0 8 1149 247 234 103 31 chr12 73967498 73967517 -47290013 + B1_Mur3 SINE Alu 90 109 -40 8 1149 353 222 38 0 chr12 73967578 73967668 -47289862 + B4 SINE B4 152 248 -44 8 1149 221 295 98 0 chr12 73967731 73967792 -47289738 + RSINE1 SINE B4 99 165 0 8 1149 525 287 177 46 chr12 73968569 73969172 -47288358 + L1MB1 LINE L1 5468 6149 -40 8 1149 1813 156 38 16 chr12 73969288 73969608 -47287922 + Lx5 LINE L1 6720 7046 -4 8 1149 273 57 0 0 chr12 73969758 73969793 -47287737 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 8 1149 704 194 16 0 chr12 73969803 73969927 -47287603 - B1_Mur1 SINE Alu -19 130 5 8 1149 344 285 203 64 chr12 73969932 73970133 -47287397 + L1MC LINE L1 2688 2933 -3213 8 1149 1138 170 70 0 chr12 73970133 73970333 -47287197 - B3 SINE B2 -1 215 2 9 1149 344 285 203 64 chr12 73970333 73970367 -47287163 + L1MC LINE L1 2934 2956 -3190 8 1149 199 95 71 0 chr12 73970406 73970448 -47287082 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 9 1149 3821 151 25 0 chr12 73970547 73971231 -47286299 - L1_Mur2 LINE L1 -135 5742 5042 9 1149 2707 164 124 38 chr12 73971233 73972049 -47285481 + Lx4B LINE L1 6065 7041 -17 9 1149 225 0 0 0 chr12 73972054 73972079 -47285451 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1149 565 178 10 0 chr12 73972116 73972217 -47285313 + B1_Mur1 SINE Alu 47 148 -1 9 1149 25 31 0 0 chr12 73972282 73972314 -47285216 + AT_rich Low_complexity Low_complexity 1 32 0 9 1149 264 258 72 43 chr12 73972378 73972447 -47285083 + 4.5SRNA scRNA scRNA 20 90 -4 9 1149 479 157 12 12 chr12 73972388 73972472 -47285058 + PB1D9 SINE Alu 37 120 0 9 1149 335 78 0 122 chr12 73972472 73972603 -47284927 + A-rich Low_complexity Low_complexity 6 120 0 9 1149 313 241 22 44 chr12 73972610 73972701 -47284829 + RLTR9A LTR ERVK 1 89 -279 9 1149 556 242 111 40 chr12 73972725 73972923 -47284607 + RLTR9A LTR ERVK 154 365 -3 9 1149 240 308 165 0 chr12 73973009 73973100 -47284430 - B1_Mur2 SINE Alu -41 108 3 9 1149 244 233 163 0 chr12 73973123 73973209 -47284321 + L1ME1 LINE L1 5478 5577 -602 9 1149 384 333 146 0 chr12 73973303 73973516 -47284014 + MLT1A0 LTR MaLR 90 333 -32 9 1149 505 264 55 33 chr12 73973584 73974048 -47283482 + L1ME1 LINE L1 5669 6146 -1639 9 1149 775 197 118 10 chr12 73974060 73974255 -47283275 + B3 SINE B2 1 216 0 9 1149 450 304 117 38 chr12 73974506 73974745 -47282785 + MLT1D LTR MaLR 6 263 -242 9 1149 579 245 32 95 chr12 73974839 73974997 -47282533 - B1_Mur1 SINE Alu 0 149 2 9 1149 391 308 28 18 chr12 73975016 73975125 -47282405 - PB1 SINE Alu -11 116 7 9 1149 913 302 76 0 chr12 73975131 73975419 -47282111 + MLT2C2 LTR ERVL 100 409 -55 9 1149 445 291 120 46 chr12 73975432 73975673 -47281857 + MLT1D LTR MaLR 239 497 -8 9 1149 189 0 0 0 chr12 73975673 73975694 -47281836 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1149 693 263 8 0 chr12 73976512 73976645 -47280885 + ID_B1 SINE B4 83 216 -8 9 1149 1233 41 0 0 chr12 73976683 73976830 -47280700 + B1_Mus2 SINE Alu 1 147 0 9 1149 315 0 0 0 chr12 73976830 73976865 -47280665 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1149 659 297 98 76 chr12 73977346 73977623 -47279907 - B4 SINE B4 -8 284 2 9 1149 368 319 27 61 chr12 73977956 73978103 -47279427 + B4A SINE B4 1 142 -150 9 1149 956 159 0 20 chr12 73979022 73979170 -47278360 - B1_Mur4 SINE Alu -5 145 1 9 1149 2118 115 94 24 chr12 73979332 73979714 -47277816 - RLTR9E LTR ERVK 0 409 1 9 1149 1080 206 30 0 chr12 73980013 73980212 -47277318 + B3 SINE B2 1 205 -11 9 1149 274 318 71 26 chr12 73980477 73980580 -47276950 - LTR52 LTR ERVL -273 148 40 9 1149 3030 119 8 64 chr12 73980580 73981110 -47276420 + Lx3A LINE L1 6475 6974 -7 9 1149 23 33 0 0 chr12 73981119 73981149 -47276381 + AT_rich Low_complexity Low_complexity 1 30 0 9 1149 233 176 0 38 chr12 73981149 73981202 -47276328 - LTR52 LTR ERVL -369 52 2 9 1149 1204 62 0 0 chr12 73981641 73981787 -47275743 - B1_Mus2 SINE Alu 0 147 2 9 1149 21 95 0 0 chr12 73983800 73983863 -47273667 + AT_rich Low_complexity Low_complexity 1 63 0 9 1149 407 362 73 73 chr12 73984549 73984660 -47272870 + L2a LINE L2 2698 2812 -607 9 1149 206 0 69 0 chr12 73984660 73984689 -47272841 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1149 407 361 102 35 chr12 73984689 73985107 -47272423 + L2a LINE L2 2813 3242 -184 9 1149 23 0 0 0 chr12 73985508 73985531 -47271999 + AT_rich Low_complexity Low_complexity 1 23 0 9 1149 334 290 65 54 chr12 73985565 73985751 -47271779 + L2a LINE L2 3234 3421 -5 9 1149 333 257 14 0 chr12 73986429 73986499 -47271031 + ID4 SINE ID 2 72 -11 9 1149 251 254 14 40 chr12 73986546 73986620 -47270910 + ID4_ SINE ID 5 76 -7 9 1149 270 0 0 0 chr12 73986620 73986650 -47270880 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 9 1149 23 86 0 0 chr12 73986739 73986797 -47270733 + AT_rich Low_complexity Low_complexity 1 58 0 9 1149 465 258 21 0 chr12 73986991 73987084 -47270446 - RSINE1 SINE B4 -3 162 68 9 1149 422 266 144 25 chr12 73987207 73987613 -47269917 - L1M4 LINE L1 -2894 3252 2779 9 1149 1467 58 5 11 chr12 73987613 73987804 -47269726 - B2_Mm2 SINE B2 -4 191 2 9 1149 374 275 182 38 chr12 73987804 73987826 -47269704 - L1M4 LINE L1 -3368 2778 2762 9 1149 788 172 75 0 chr12 73987851 73987979 -47269551 + B1_Mus1 SINE Alu 1 138 -10 9 1149 423 0 0 0 chr12 73987979 73988026 -47269504 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1149 291 54 0 0 chr12 73988046 73988083 -47269447 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1149 316 296 0 0 chr12 73988300 73988371 -47269159 - ID4_ SINE ID -11 72 2 9 1149 314 308 90 7 chr12 73988416 73988704 -47268826 - L1MD LINE L1 -3707 2439 2128 9 1149 902 151 7 0 chr12 73988938 73989084 -47268446 - B1_Mus1 SINE Alu -1 147 1 9 1149 23 0 0 0 chr12 73989393 73989416 -47268114 + AT_rich Low_complexity Low_complexity 1 23 0 9 1149 310 244 86 64 chr12 73989510 73989650 -47267880 - MIR SINE MIR 0 262 120 9 1149 21 36 0 0 chr12 73990056 73990084 -47267446 + AT_rich Low_complexity Low_complexity 1 28 0 9 1149 367 215 12 48 chr12 73990087 73990170 -47267360 - ID4 SINE ID 0 83 4 9 1149 405 0 0 0 chr12 73990197 73990242 -47267288 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1149 356 289 13 0 chr12 73990308 73990384 -47267146 - B2_Mm2 SINE B2 -118 77 1 9 1149 244 333 13 0 chr12 73990487 73990565 -47266965 - ID4_ SINE ID -1 82 4 9 1149 249 327 91 88 chr12 73991029 73991251 -47266279 - MIRb SINE MIR -21 247 18 9 1149 365 222 0 0 chr12 73991369 73991441 -47266089 + B1_Mus2 SINE Alu 74 145 -2 9 1149 1431 56 0 0 chr12 73991448 73991814 -47265716 + (CCAA)n Simple_repeat Simple_repeat 1 366 0 9 1149 209 33 0 32 chr12 73992255 73992286 -47265244 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 9 1149 5218 56 1 1 chr12 73992293 73992942 -47264588 - L1_Mus1 LINE L1 0 6567 5919 9 1149 905 29 163 7 chr12 73993347 73993488 -47264042 + L1_Mus3 LINE L1 6471 6633 -5 9 1149 190 357 0 0 chr12 73993515 73993571 -47263959 + L2b LINE L2 3320 3375 0 9 1149 209 33 33 0 chr12 73993673 73993703 -47263827 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 9 1149 27 29 0 0 chr12 73993751 73993785 -47263745 + AT_rich Low_complexity Low_complexity 1 34 0 9 1149 3326 142 82 17 chr12 73994509 73995083 -47262447 + RMER19C LTR ERVK 1 611 0 9 1149 237 180 40 0 chr12 73995348 73995398 -47262132 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1149 297 0 0 0 chr12 73995398 73995431 -47262099 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 1149 23 0 0 0 chr12 73995684 73995707 -47261823 + AT_rich Low_complexity Low_complexity 1 23 0 9 1149 626 226 36 50 chr12 73996219 73996295 -47261235 - B3A SINE B2 -57 141 69 9 1149 3152 66 0 2 chr12 73996295 73996692 -47260838 + MTA_Mm LTR MaLR 1 396 0 9 1149 626 226 36 50 chr12 73996692 73996755 -47260775 - B3A SINE B2 -130 68 4 9 1149 3648 86 52 18 chr12 73996854 73997397 -47260133 + Lx3A LINE L1 6418 6978 -3 9 1149 828 222 0 143 chr12 73997430 73997484 -47260046 + B3A SINE B2 1 36 -162 9 1149 1564 91 52 4 chr12 73997484 73997716 -47259814 - Lx2 LINE L1 -2 6995 6753 9 1149 828 222 0 143 chr12 73997716 73997892 -47259638 + B3A SINE B2 37 198 0 9 1149 683 247 95 37 chr12 73998435 73998624 -47258906 - B3 SINE B2 -2 214 15 9 1149 422 299 151 63 chr12 73998912 73999343 -47258187 + L1ME4a LINE L1 5639 6107 -17 9 1149 22 35 0 0 chr12 73999434 73999463 -47258067 + AT_rich Low_complexity Low_complexity 1 29 0 9 1149 23 0 0 0 chr12 73999672 73999695 -47257835 + AT_rich Low_complexity Low_complexity 1 23 0 9 1149 383 239 68 42 chr12 74000138 74000256 -47257274 + L1MB7 LINE L1 6039 6159 -25 1 1149 675 236 17 96 chr12 74000353 74000531 -47256999 + RSINE1 SINE B4 2 165 0 2 1149 885 159 15 0 chr12 74001052 74001184 -47256346 + B1_Mus2 SINE Alu 1 134 -13 3 1149 225 0 0 0 chr12 74001185 74001210 -47256320 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1149 23 78 0 0 chr12 74001774 74001825 -47255705 + AT_rich Low_complexity Low_complexity 1 51 0 5 1149 322 255 10 0 chr12 74001872 74002013 -47255517 + (CATATA)n Simple_repeat Simple_repeat 1 142 0 6 1149 438 254 197 15 chr12 74002022 74002222 -47255308 + B4A SINE B4 2 237 -55 7 1149 823 322 50 0 chr12 74002230 74002472 -47255058 - Lx9 LINE L1 -929 6715 6462 8 1149 3471 43 2 8 chr12 74002553 74002951 -47254579 + MTA_Mm LTR MaLR 1 396 0 9 1149 951 122 58 0 chr12 74003099 74003238 -47254292 - B1_Mur4 SINE Alu 0 150 4 1 1149 276 290 0 0 chr12 74003530 74003592 -47253938 - ID4_ SINE ID -21 62 1 1 1149 440 274 126 10 chr12 74004898 74005097 -47252433 - Tigger7 DNA MER2_type -1876 615 394 1 1149 212 109 0 132 chr12 74005099 74005126 -47252404 + T-rich Low_complexity Low_complexity 20 46 0 1 1149 1262 55 0 7 chr12 74005126 74005274 -47252256 - B1_Mus2 SINE Alu 0 147 1 1 1149 212 109 0 132 chr12 74005274 74005299 -47252231 + T-rich Low_complexity Low_complexity 1 19 0 1 1149 871 54 0 0 chr12 74005299 74005410 -47252120 - B1_Mus2 SINE Alu 0 147 37 1 1149 1621 57 0 20 chr12 74005428 74005624 -47251906 - B2_Mm1a SINE B2 0 193 2 1 1149 283 242 0 0 chr12 74005635 74005697 -47251833 - Tigger7 DNA MER2_type -2095 396 335 1 1149 637 193 44 0 chr12 74005776 74005890 -47251640 - B2_Mm1t SINE B2 -73 120 2 1 1149 870 286 147 7 chr12 74005890 74006182 -47251348 - Tigger7 DNA MER2_type -2141 350 16 1 1149 817 189 42 7 chr12 74006489 74006633 -47250897 + B1_Mur4 SINE Alu 1 149 -1 1 1149 1251 48 14 0 chr12 74007330 74007475 -47250055 - B1_Mus2 SINE Alu 0 147 1 2 1149 526 311 7 0 chr12 74007540 74007675 -47249855 + B4A SINE B4 7 142 -150 2 1149 393 22 0 0 chr12 74007721 74007767 -47249763 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1149 1168 195 30 5 chr12 74007876 74008077 -47249453 + B3 SINE B2 3 208 -8 2 1149 258 258 60 15 chr12 74008270 74008337 -47249193 + ID2 SINE ID 3 72 -11 2 1149 759 182 0 0 chr12 74008541 74008667 -47248863 + B2_Mm2 SINE B2 4 129 -66 2 1149 366 23 0 0 chr12 74008685 74008728 -47248802 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 1149 1102 58 58 0 chr12 74009442 74009581 -47247949 - B1_Mus2 SINE Alu 0 147 1 2 1149 1170 242 58 29 chr12 74011365 74011675 -47245855 - Lx8 LINE L1 -104 7369 7051 2 1149 318 106 0 0 chr12 74012343 74012390 -47245140 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 1149 237 33 0 0 chr12 74012426 74012456 -47245074 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1149 921 195 125 10 chr12 74012469 74012661 -47244869 + B3 SINE B2 2 215 -1 3 1149 222 337 91 34 chr12 74012748 74012923 -47244607 + L4 LINE RTE 1644 1828 -201 3 1149 1752 164 97 18 chr12 74013109 74013451 -47244079 - ORR1D1 LTR MaLR -2 372 4 3 1149 959 251 24 5 chr12 74015251 74015463 -47242067 - B3 SINE B2 0 216 1 3 1149 605 289 7 21 chr12 74015585 74015730 -47241800 - ID_B1 SINE B4 -13 211 69 3 1149 1152 92 45 28 chr12 74015762 74015940 -47241590 - B2_Mm2 SINE B2 -6 189 9 3 1149 249 254 18 0 chr12 74016088 74016143 -47241387 + GA-rich Low_complexity Low_complexity 2 57 0 3 1149 361 263 79 0 chr12 74016181 74016257 -47241273 - ID4 SINE ID 0 83 2 3 1149 850 265 18 41 chr12 74016913 74017133 -47240397 - B3 SINE B2 0 216 2 3 1149 25 0 0 0 chr12 74017135 74017160 -47240370 + AT_rich Low_complexity Low_complexity 1 25 0 4 1149 1234 68 0 0 chr12 74019072 74019218 -47238312 - B1_Mus2 SINE Alu 0 147 2 4 1149 25 0 0 0 chr12 74019551 74019576 -47237954 + AT_rich Low_complexity Low_complexity 1 25 0 4 1149 316 299 0 0 chr12 74020095 74020172 -47237358 - MLT1A LTR MaLR -232 142 66 4 1149 827 252 47 12 chr12 74020295 74020562 -47236968 - L1MA9 LINE L1 -105 6207 5936 4 1149 1213 74 0 7 chr12 74020590 74020739 -47236791 + B1_Mus1 SINE Alu 1 148 0 4 1149 330 143 0 0 chr12 74020740 74020817 -47236713 + (A)n Simple_repeat Simple_repeat 1 77 0 4 1149 1046 67 0 7 chr12 74020817 74020953 -47236577 - ORR1A1 LTR MaLR -57 289 155 4 1149 1741 193 132 34 chr12 74020972 74021584 -47235946 - Lx9 LINE L1 -5 7639 6905 4 1149 3494 164 87 20 chr12 74021585 74022275 -47235255 + RMER19B LTR ERVK 167 902 0 4 1149 1920 230 55 70 chr12 74022275 74022664 -47234866 - Lx9 LINE L1 -944 6700 6326 4 1149 1005 113 14 14 chr12 74022664 74022808 -47234722 + B1_Mus2 SINE Alu 2 145 -2 5 1149 1920 230 55 70 chr12 74022808 74023021 -47234509 - Lx9 LINE L1 -1319 6325 6108 4 1149 1987 217 99 21 chr12 74023050 74023267 -47234263 - Lx9 LINE L1 -1658 5986 5715 4 1149 507 17 0 0 chr12 74023267 74023327 -47234203 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1149 1987 192 105 26 chr12 74023327 74023676 -47233854 - Lx9 LINE L1 -133 5714 5345 4 1149 1020 267 65 19 chr12 74023677 74023986 -47233544 - L1MA9 LINE L1 -369 5943 5621 4 1149 621 186 0 0 chr12 74024019 74024148 -47233382 + (TATG)n Simple_repeat Simple_repeat 3 131 0 5 1149 393 272 48 19 chr12 74024148 74024253 -47233277 - PB1D10 SINE Alu -9 108 1 5 1149 854 254 42 60 chr12 74024255 74024590 -47232940 - L1MA9 LINE L1 -682 5609 5281 4 1149 573 55 0 0 chr12 74024682 74024755 -47232775 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1149 2267 165 49 20 chr12 74025552 74025650 -47231880 - MTC LTR MaLR 0 421 325 5 1149 2287 109 12 56 chr12 74025650 74025991 -47231539 + ORR1A3 LTR MaLR 1 326 0 5 1149 2267 165 49 20 chr12 74025991 74026300 -47231230 - MTC LTR MaLR -97 324 2 5 1149 902 193 6 18 chr12 74026568 74026737 -47230793 + B2_Mm2 SINE B2 2 168 -27 5 1149 283 277 14 211 chr12 74027410 74027519 -47230011 + MTE2a LTR MaLR 3 86 -293 5 1149 291 54 0 0 chr12 74027519 74027556 -47229974 + (TTA)n Simple_repeat Simple_repeat 2 38 0 5 1149 5230 116 27 12 chr12 74027556 74028299 -47229231 - Lx4A LINE L1 -6 7052 6299 6 1149 283 277 14 211 chr12 74028299 74028330 -47229200 + MTE2a LTR MaLR 87 115 -264 5 1149 266 233 0 16 chr12 74028300 74028361 -47229169 + MTD LTR MaLR 325 384 -35 6 1149 478 242 83 52 chr12 74028359 74028551 -47228979 + MTC-int LTR MaLR 109 306 -952 6 1149 396 172 16 0 chr12 74028655 74028719 -47228811 - B1_Mur4 SINE Alu -77 73 9 6 1149 3413 58 5 21 chr12 74028780 74029201 -47228329 + L1_Mus2 LINE L1 6152 6565 -1 6 1149 27 49 0 0 chr12 74029694 74029735 -47227795 + AT_rich Low_complexity Low_complexity 1 41 0 6 1149 276 274 160 50 chr12 74029870 74029989 -47227541 + MLT1C LTR MaLR 25 156 -349 6 1149 705 143 9 13 chr12 74030074 74030305 -47227225 + (CA)n Simple_repeat Simple_repeat 1 229 0 6 1149 313 266 83 64 chr12 74030320 74030528 -47227002 + MLT1C LTR MaLR 172 460 -7 6 1149 797 251 63 19 chr12 74030607 74030814 -47226716 + B3 SINE B2 1 216 0 6 1149 25 0 0 0 chr12 74030816 74030841 -47226689 + AT_rich Low_complexity Low_complexity 1 25 0 6 1149 29 0 0 0 chr12 74031540 74031569 -47225961 + AT_rich Low_complexity Low_complexity 1 29 0 7 1149 23 0 0 0 chr12 74031723 74031746 -47225784 + AT_rich Low_complexity Low_complexity 1 23 0 7 1149 250 259 132 46 chr12 74032759 74032933 -47224597 - L1MA6 LINE L1 -1 6299 6111 7 1149 1259 74 0 0 chr12 74032974 74033122 -47224408 + B1_Mus1 SINE Alu 1 148 0 7 1149 354 270 0 0 chr12 74033829 74033918 -47223612 + PB1D10 SINE Alu 27 115 -2 7 1149 6055 76 15 35 chr12 74034062 74035344 -47222186 - L1VL2 LINE L1 -1789 1826 569 7 1149 1034 240 10 5 chr12 74035482 74035691 -47221839 + B3 SINE B2 2 211 -5 7 1149 254 277 215 16 chr12 74035833 74035954 -47221576 - MER20 DNA MER1_type -45 174 30 7 1149 529 333 0 88 chr12 74036126 74036297 -47221233 - RSINE1 SINE B4 0 165 10 7 1149 1442 73 34 0 chr12 74036331 74036510 -47221020 + B2_Mm1t SINE B2 1 185 -8 7 1149 26 64 0 0 chr12 74037296 74037343 -47220187 + AT_rich Low_complexity Low_complexity 1 47 0 8 1149 190 0 32 32 chr12 74037743 74037774 -47219756 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1149 261 0 0 0 chr12 74038218 74038247 -47219283 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1149 230 217 0 0 chr12 74039266 74039312 -47218218 + C-rich Low_complexity Low_complexity 1 46 0 8 1149 21 0 0 0 chr12 74039544 74039565 -47217965 + GC_rich Low_complexity Low_complexity 1 21 0 8 1149 441 0 0 0 chr12 74039856 74039905 -47217625 + (A)n Simple_repeat Simple_repeat 1 49 0 8 1149 351 60 0 0 chr12 74040194 74040244 -47217286 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1149 215 170 21 0 chr12 74044124 74044171 -47213359 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1149 657 146 0 0 chr12 74044443 74044566 -47212964 + (TATG)n Simple_repeat Simple_repeat 4 126 0 8 1149 317 322 73 16 chr12 74044827 74044950 -47212580 - MER96 DNA hAT -11 164 35 8 1149 408 271 6 16 chr12 74044951 74045054 -47212476 + B1_Mur1 SINE Alu 10 136 -13 9 1149 21 0 0 0 chr12 74046458 74046479 -47211051 + GC_rich Low_complexity Low_complexity 1 21 0 9 1149 191 371 33 22 chr12 74047546 74047637 -47209893 + L2c LINE L2 3287 3378 -9 9 1149 325 253 0 13 chr12 74048042 74048118 -47209412 + MLT1A1 LTR MaLR 41 115 -293 9 1149 330 226 86 9 chr12 74048145 74048261 -47209269 + ORR1D1 LTR MaLR 169 293 -81 9 1149 330 298 12 0 chr12 74048650 74048734 -47208796 - MER91B DNA Tip100 0 190 106 9 1149 666 37 0 0 chr12 74048737 74048818 -47208712 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 1149 463 283 39 50 chr12 74048831 74049013 -47208517 + MLT1A1 LTR MaLR 211 390 -18 9 1149 1216 197 14 5 chr12 74049500 74049714 -47207816 - B3 SINE B2 0 216 1 9 1149 189 331 105 49 chr12 74050062 74050205 -47207325 + MIRb SINE MIR 35 185 -83 9 1149 195 129 0 0 chr12 74050335 74050366 -47207164 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1149 409 314 105 21 chr12 74050379 74050522 -47207008 - RSINE1 SINE B4 0 165 11 1 1149 401 284 0 88 chr12 74050548 74050695 -47206835 + RSINE1 SINE B4 2 135 -30 1 1149 222 37 0 0 chr12 74050704 74050731 -47206799 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1149 1357 70 23 6 chr12 74050794 74050967 -47206563 - B2_Mm2 SINE B2 -19 176 1 1 1149 232 290 119 18 chr12 74050994 74051103 -47206427 - PB1D7 SINE Alu 0 120 1 1 1149 417 211 0 0 chr12 74051447 74051518 -47206012 + ID4_ SINE ID 10 80 -3 1 1149 333 0 0 0 chr12 74051524 74051561 -47205969 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1149 324 0 0 0 chr12 74051561 74051596 -47205934 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1149 243 0 0 0 chr12 74051596 74051622 -47205908 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1149 550 218 88 114 chr12 74051708 74051837 -47205693 + L1MB7 LINE L1 5708 5828 -356 1 1149 799 225 82 6 chr12 74051837 74052020 -47205510 + B3A SINE B2 2 198 0 1 1149 550 218 88 114 chr12 74052020 74052118 -47205412 + L1MB7 LINE L1 5829 5929 -255 1 1149 671 302 121 14 chr12 74052143 74052582 -47204948 - Arthur1 DNA Tip100 -124 3823 3338 1 1149 801 273 181 25 chr12 74052606 74052959 -47204571 - Arthur1 DNA Tip100 -3537 410 3 1 1149 405 76 106 0 chr12 74053099 74053165 -47204365 + B1_Mur4 SINE Alu 77 149 -1 1 1149 207 0 0 0 chr12 74053167 74053190 -47204340 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1149 405 102 0 0 chr12 74053203 74053262 -47204268 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 1 1149 327 260 63 10 chr12 74053269 74053374 -47204156 + PB1D9 SINE Alu 4 120 -7 1 1149 438 219 202 0 chr12 74053864 74053983 -47203547 + ID_B1 SINE B4 78 220 -4 1 1149 258 358 32 0 chr12 74054166 74054261 -47203269 + MER96 DNA hAT 1 98 -77 1 1149 1853 203 112 25 chr12 74054626 74055211 -47202319 - RMER19B LTR ERVK 0 902 199 1 1149 21 0 0 0 chr12 74055389 74055410 -47202120 + AT_rich Low_complexity Low_complexity 1 21 0 1 1150 998 127 0 39 chr12 74057860 74058016 -47199514 + B1_Mur4 SINE Alu 1 150 0 1 1150 290 254 42 14 chr12 74058174 74058246 -47199284 - RSINE1 SINE B4 -90 75 2 1 1150 383 243 27 45 chr12 74058847 74058959 -47198571 + RSINE1 SINE B4 3 112 -53 1 1150 289 274 32 8 chr12 74059435 74059560 -47197970 + MER33 DNA MER1_type 196 323 -1 1 1150 983 241 25 0 chr12 74059851 74060054 -47197476 - B3 SINE B2 -7 209 2 1 1150 335 186 78 0 chr12 74060129 74060217 -47197313 - MTEb LTR MaLR -14 365 259 1 1150 438 139 0 0 chr12 74060353 74060439 -47197091 + (GA)n Simple_repeat Simple_repeat 1 86 0 1 1150 640 133 35 9 chr12 74060489 74060603 -47196927 + B3 SINE B2 92 208 -8 1 1150 381 111 16 0 chr12 74060740 74060803 -47196727 + B1_Mus1 SINE Alu 5 68 -80 1 1150 426 144 132 19 chr12 74060773 74060879 -47196651 - B3A SINE B2 -80 118 1 1 1150 523 259 0 71 chr12 74060933 74061074 -47196456 - RSINE1 SINE B4 0 165 35 1 1150 186 43 0 0 chr12 74061264 74061287 -47196243 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1150 944 244 90 25 chr12 74061287 74061544 -47195986 + Ricksha DNA MuDR 1521 1805 -1441 1 1150 216 0 0 0 chr12 74061544 74061568 -47195962 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1150 944 244 90 25 chr12 74061568 74061633 -47195897 + Ricksha DNA MuDR 1806 1864 -1382 1 1150 1925 98 15 62 chr12 74061666 74062003 -47195527 + ORR1A4 LTR MaLR 1 321 -8 1 1150 638 255 50 0 chr12 74062006 74062167 -47195363 + MTE2b LTR MaLR 41 209 -170 1 1150 4379 148 88 12 chr12 74062173 74063000 -47194530 + RMER19B LTR ERVK 1 890 -12 1 1150 250 306 70 20 chr12 74063022 74063122 -47194408 + MTE2b LTR MaLR 219 323 -56 1 1150 222 211 0 0 chr12 74063496 74063534 -47193996 + (CATG)n Simple_repeat Simple_repeat 3 40 0 1 1150 965 279 66 49 chr12 74063563 74063823 -47193707 + Ricksha DNA MuDR 2479 2740 -506 1 1150 860 197 64 25 chr12 74063823 74064026 -47193504 + B3 SINE B2 2 212 -4 1 1150 965 279 66 49 chr12 74064026 74064191 -47193339 + Ricksha DNA MuDR 2741 2911 -335 1 1150 4331 70 5 2 chr12 74064358 74064913 -47192617 + L1_Mus3 LINE L1 6082 6638 0 1 1150 1092 263 81 37 chr12 74064954 74065026 -47192504 - L1MC LINE L1 -753 5393 5319 1 1150 2109 170 111 11 chr12 74065026 74065118 -47192412 - RLTR16 LTR ERVK 0 505 416 1 1150 333 0 0 0 chr12 74065118 74065155 -47192375 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1150 2109 170 111 11 chr12 74065155 74065521 -47192009 - RLTR16 LTR ERVK -90 415 3 1 1150 1092 263 81 37 chr12 74065521 74065930 -47191600 - L1MC LINE L1 -828 5318 4891 1 1150 308 164 16 16 chr12 74066105 74066167 -47191363 - L1MC LINE L1 -1262 4884 4823 1 1150 367 267 75 0 chr12 74066281 74066427 -47191103 - L1MCa LINE L1 -4299 2209 2053 1 1150 844 269 108 6 chr12 74066428 74066761 -47190769 - L1MCa LINE L1 -4621 1887 1521 1 1150 674 223 55 59 chr12 74066822 74066867 -47190663 - L1MCa LINE L1 -5110 1398 1359 1 1150 1418 181 243 21 chr12 74066867 74067200 -47190330 - MTB_Mm LTR MaLR 0 407 1 1 1150 674 223 55 59 chr12 74067200 74067444 -47190086 - L1MCa LINE L1 -5150 1358 1110 1 1150 989 118 6 0 chr12 74067605 74067766 -47189764 + Lx2 LINE L1 5921 6082 -915 1 1150 282 265 15 0 chr12 74067767 74067835 -47189695 + B3 SINE B2 148 216 0 1 1150 528 203 62 0 chr12 74068689 74068817 -47188713 + ORR1D2 LTR MaLR 1 136 -234 1 1150 775 127 60 0 chr12 74068803 74068937 -47188593 + B1_Mur4 SINE Alu 9 150 0 1 1150 849 198 47 52 chr12 74068991 74069204 -47188326 + ORR1D2 LTR MaLR 159 370 0 1 1150 662 244 48 6 chr12 74069411 74069576 -47187954 + B3A SINE B2 1 172 -26 1 1150 572 292 44 51 chr12 74069628 74069902 -47187628 + L1MB3 LINE L1 5573 5844 -339 1 1150 400 346 15 69 chr12 74070161 74070363 -47187167 - ORR1E LTR MaLR -168 191 1 1 1150 939 150 14 0 chr12 74070579 74070726 -47186804 + B1_Mur4 SINE Alu 2 150 0 1 1150 33 25 0 0 chr12 74070866 74070906 -47186624 + AT_rich Low_complexity Low_complexity 1 40 0 1 1150 759 288 58 32 chr12 74071075 74071471 -47186059 + L1M2 LINE L1 2983 3398 -2745 1 1150 1200 83 52 72 chr12 74071471 74071665 -47185865 + B2_Mm2 SINE B2 1 190 -5 1 1150 759 288 58 32 chr12 74071665 74071734 -47185796 + L1M2 LINE L1 3399 3460 -2683 1 1150 239 224 118 15 chr12 74073200 74073268 -47184262 - MER45R DNA Tip100 -1458 123 49 1 1150 252 77 0 0 chr12 74073685 74073724 -47183806 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1150 324 265 0 20 chr12 74073760 74073860 -47183670 + Lx7 LINE L1 7584 7681 -15 1 1150 28 0 0 0 chr12 74074110 74074138 -47183392 + AT_rich Low_complexity Low_complexity 1 28 0 1 1150 479 82 0 14 chr12 74074591 74074665 -47182865 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1150 182 270 40 101 chr12 74074757 74074856 -47182674 + MER5A DNA MER1_type 97 189 0 1 1150 644 236 89 123 chr12 74075069 74075461 -47182069 + MTD LTR MaLR 14 399 -20 1 1150 342 290 77 35 chr12 74075854 74075997 -47181533 - RSINE1 SINE B4 0 165 17 1 1150 246 311 214 0 chr12 74076341 74076444 -47181086 + PB1 SINE Alu 1 125 -2 1 1150 209 33 33 0 chr12 74077461 74077491 -47180039 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 1150 1385 68 11 0 chr12 74078549 74078725 -47178805 + B2_Mm1t SINE B2 2 179 -14 1 1150 337 125 13 34 chr12 74078774 74078841 -47178689 + B2_Mm2 SINE B2 46 116 -82 1 1150 279 54 0 0 chr12 74078856 74078893 -47178637 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 1150 812 209 0 7 chr12 74079575 74079724 -47177806 + B1_Mur2 SINE Alu 1 148 -1 1 1150 183 42 0 0 chr12 74079799 74079823 -47177707 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1150 480 86 0 0 chr12 74079829 74079899 -47177631 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1150 758 255 10 21 chr12 74079907 74080099 -47177431 + ID_B1 SINE B4 6 195 -29 1 1150 374 253 0 0 chr12 74080126 74080201 -47177329 + B1F2 SINE Alu 3 77 -72 1 1150 243 0 0 0 chr12 74080201 74080228 -47177302 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1150 198 158 0 123 chr12 74080905 74080970 -47176560 - MIRb SINE MIR -26 242 186 1 1150 253 291 81 11 chr12 74081479 74081566 -47175964 + PB1D10 SINE Alu 12 104 -13 1 1150 447 248 44 9 chr12 74082200 74082314 -47175216 + MLT1I LTR MaLR 46 163 -248 1 1150 219 226 19 0 chr12 74082411 74082464 -47175066 + B1_Mus2 SINE Alu 62 115 -32 1 1150 366 23 0 0 chr12 74082542 74082585 -47174945 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1150 187 97 32 0 chr12 74084262 74084293 -47173237 - MIRc SINE MIR -147 121 90 1 1150 310 269 0 0 chr12 74084516 74084583 -47172947 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 1 1150 241 367 11 0 chr12 74084590 74084602 -47172928 + ID_B1 SINE B4 3 93 -131 1 1150 192 77 0 0 chr12 74084940 74084966 -47172564 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1150 247 137 27 0 chr12 74084970 74085026 -47172504 + L1MA5 LINE L1 6132 6189 -108 1 1150 744 242 77 0 chr12 74085126 74085320 -47172210 + ID_B1 SINE B4 1 209 -15 1 1150 1900 218 23 33 chr12 74085321 74085817 -47171713 - RMER19C LTR ERVK -241 661 166 1 1150 515 250 26 0 chr12 74085778 74085894 -47171636 + RSINE1 SINE B4 31 149 -16 1 1150 268 240 38 51 chr12 74085983 74086062 -47171468 + ID4_ SINE ID 1 78 -5 1 1150 270 0 0 0 chr12 74086421 74086451 -47171079 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1150 244 314 49 0 chr12 74087058 74087160 -47170370 + MIR SINE MIR 96 202 -60 1 1150 1450 217 195 26 chr12 74087160 74087585 -47169945 + RLTR19 LTR ERVK 1 497 -2 1 1150 492 72 0 0 chr12 74087890 74087959 -47169571 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1150 752 298 97 19 chr12 74088177 74088573 -47168957 + MLT2B4 LTR ERVL 5 484 -72 1 1150 945 84 11 53 chr12 74088586 74088774 -47168756 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1150 494 158 180 27 chr12 74088975 74089086 -47168444 - B1_Mus2 SINE Alu -11 136 9 1 1150 1205 62 0 0 chr12 74089394 74089539 -47167991 + B1_Mm SINE Alu 1 145 -2 1 1150 397 381 54 32 chr12 74089558 74090111 -47167419 - L1M5 LINE L1 -1039 5107 4543 1 1150 758 223 25 50 chr12 74090138 74090336 -47167194 + B3A SINE B2 2 194 -4 1 1150 537 298 7 0 chr12 74090343 74090484 -47167046 + B3 SINE B2 44 185 -31 1 1150 279 0 0 0 chr12 74090488 74090519 -47167011 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1150 925 174 111 0 chr12 74090637 74090827 -47166703 + URR1B DNA MER1_type 15 225 0 2 1150 367 300 83 37 chr12 74090833 74091183 -47166347 - L1M5 LINE L1 -1672 4474 4109 1 1150 747 172 38 109 chr12 74091651 74091706 -47165824 - B3 SINE B2 -46 170 132 2 1150 1578 43 0 0 chr12 74091706 74091890 -47165640 - B2_Mm1t SINE B2 -8 185 2 2 1150 747 172 38 109 chr12 74091890 74092017 -47165513 - B3 SINE B2 -85 131 1 2 1150 494 317 79 31 chr12 74092054 74092445 -47165085 - L1M5 LINE L1 -2736 3410 3001 1 1150 1169 88 0 0 chr12 74092694 74092842 -47164688 - B1_Mus1 SINE Alu 0 148 1 2 1150 2431 159 63 90 chr12 74092842 74093270 -47164260 - RMER19B LTR ERVK -16 886 429 2 1150 441 0 0 0 chr12 74093270 74093319 -47164211 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 2 1150 2431 195 96 97 chr12 74093319 74093582 -47163948 - RMER19B LTR ERVK -474 428 1 2 1150 276 321 130 0 chr12 74093620 74093751 -47163779 - Lx8 LINE L1 -780 6693 6546 2 1150 838 162 0 0 chr12 74094089 74094231 -47163299 + B1_Mus1 SINE Alu 7 148 0 2 1150 200 97 0 31 chr12 74094231 74094263 -47163267 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 2 1150 966 134 256 0 chr12 74094314 74094486 -47163044 + B3 SINE B2 1 216 0 2 1150 1085 254 10 34 chr12 74094515 74094813 -47162717 + B4 SINE B4 1 291 -1 2 1150 768 152 45 0 chr12 74094863 74094995 -47162535 + B1_Mus2 SINE Alu 1 138 -9 2 1150 1605 37 0 16 chr12 74095174 74095365 -47162165 - B2_Mm1a SINE B2 -5 188 1 2 1150 228 61 59 39 chr12 74095467 74095518 -47162012 + T-rich Low_complexity Low_complexity 1 52 0 2 1150 896 85 14 14 chr12 74095524 74095667 -47161863 - B1_Mur4 SINE Alu -7 143 1 2 1150 1063 71 28 0 chr12 74095801 74095942 -47161588 + B1_Mus2 SINE Alu 1 145 -2 2 1150 243 0 0 0 chr12 74095945 74095972 -47161558 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1150 320 258 11 0 chr12 74096000 74096089 -47161441 + L1M5 LINE L1 4942 5031 -1115 2 1150 286 234 117 0 chr12 74096102 74096213 -47161317 - L1MC LINE L1 -3234 2912 2789 2 1150 1503 206 100 39 chr12 74096234 74096673 -47160857 - RMER4A LTR ERVK 0 466 1 2 1150 465 233 135 14 chr12 74096677 74096873 -47160657 - L1MC LINE L1 -3369 2777 2561 2 1150 248 331 65 43 chr12 74096883 74097022 -47160508 + L1ME3A LINE L1 6002 6143 -30 2 1150 428 251 92 16 chr12 74097050 74097180 -47160350 - B3A SINE B2 -1 194 72 2 1150 356 281 22 0 chr12 74097182 74097271 -47160259 - Lx9 LINE L1 -999 6645 6555 2 1150 309 212 0 0 chr12 74097580 74097646 -47159884 - L1MD LINE L1 -3520 2626 2561 2 1150 601 221 142 21 chr12 74097737 74097927 -47159603 - B4 SINE B4 -79 213 1 2 1150 384 111 22 11 chr12 74098101 74098192 -47159338 + (TA)n Simple_repeat Simple_repeat 1 92 0 2 1150 302 259 98 36 chr12 74098195 74098307 -47159223 - ID_B1 SINE B4 -24 200 82 2 1150 1409 73 17 0 chr12 74098525 74098704 -47158826 + B2_Mm2 SINE B2 1 182 -13 2 1150 614 268 45 7 chr12 74098721 74098875 -47158655 + B3A SINE B2 1 160 -38 2 1150 315 0 0 0 chr12 74098877 74098912 -47158618 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1150 306 0 0 0 chr12 74098930 74098964 -47158566 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 2 1150 574 207 87 22 chr12 74099346 74099484 -47158046 + B1_Mur1 SINE Alu 3 149 0 2 1150 527 264 162 5 chr12 74100280 74100478 -47157052 + B4A SINE B4 3 231 -61 2 1150 297 310 156 101 chr12 74100483 74100720 -47156810 + B4 SINE B4 43 292 0 2 1150 324 0 0 0 chr12 74100738 74100774 -47156756 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1150 510 249 171 65 chr12 74100869 74101144 -47156386 - B4 SINE B4 -16 276 8 2 1150 190 271 19 0 chr12 74101341 74101448 -47156082 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 1150 308 244 24 0 chr12 74101495 74101659 -47155871 + (TG)n Simple_repeat Simple_repeat 2 169 0 2 1150 209 219 0 77 chr12 74101664 74101768 -47155762 + (TGGG)n Simple_repeat Simple_repeat 1 96 0 2 1150 286 280 0 13 chr12 74101790 74101866 -47155664 - B4A SINE B4 -16 276 202 2 1150 1391 99 5 0 chr12 74101868 74102060 -47155470 + B2_Mm1a SINE B2 1 193 0 2 1150 899 141 202 17 chr12 74102078 74102251 -47155279 + B3 SINE B2 5 209 -7 2 1150 445 355 68 24 chr12 74102267 74102367 -47155163 - B4A SINE B4 -78 214 119 2 1150 759 129 0 0 chr12 74102367 74102499 -47155031 + (CA)n Simple_repeat Simple_repeat 1 132 0 2 1150 445 355 68 24 chr12 74102499 74102603 -47154927 - B4A SINE B4 -174 118 2 2 1150 551 143 81 10 chr12 74103276 74103375 -47154155 - B1_Mm SINE Alu -1 146 41 2 1150 279 160 0 0 chr12 74103376 74103451 -47154079 + C-rich Low_complexity Low_complexity 1 75 0 2 1150 612 162 0 9 chr12 74103470 74103582 -47153948 - RLTRETN_Mm LTR ERVK 0 322 212 2 1150 1917 144 5 89 chr12 74103588 74103983 -47153547 + MMETn-int LTR ERVK 4483 4844 0 2 1150 1547 148 11 84 chr12 74103983 74104330 -47153200 + RLTRETN_Mm LTR ERVK 1 322 0 2 1150 235 139 0 0 chr12 74104336 74104372 -47153158 - B1_Mur4 SINE Alu -110 40 5 2 1150 747 269 107 0 chr12 74104569 74104766 -47152764 + ID_B1 SINE B4 2 219 -5 2 1150 747 222 54 71 chr12 74104772 74104956 -47152574 + B3A SINE B2 4 184 -14 2 1150 30 0 0 0 chr12 74104956 74104986 -47152544 + AT_rich Low_complexity Low_complexity 1 30 0 2 1150 543 276 78 7 chr12 74104990 74105143 -47152387 + RSINE1 SINE B4 2 165 0 2 1150 1391 77 0 40 chr12 74105178 74105380 -47152150 + B2_Mm2 SINE B2 2 195 0 2 1150 435 286 54 0 chr12 74105512 74105624 -47151906 + B1F SINE Alu 1 118 -31 2 1150 222 150 0 0 chr12 74105624 74105664 -47151866 + (GGGAGA)n Simple_repeat Simple_repeat 1 40 0 2 1150 1013 231 37 44 chr12 74105670 74105965 -47151565 + MTEb LTR MaLR 87 379 0 2 1150 483 212 88 0 chr12 74106126 74106239 -47151291 - RSINE1 SINE B4 -38 127 5 2 1150 216 333 26 0 chr12 74106651 74106729 -47150801 + ID4_ SINE ID 4 83 0 2 1150 450 284 18 0 chr12 74106758 74106867 -47150663 + RSINE1 SINE B4 16 126 -39 2 1150 583 138 0 27 chr12 74106875 74106977 -47150553 + (TCTCTG)n Simple_repeat Simple_repeat 3 102 0 2 1150 321 26 0 0 chr12 74106977 74107015 -47150515 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1150 583 138 0 27 chr12 74107015 74107061 -47150469 + (TCTCTG)n Simple_repeat Simple_repeat 6 50 0 2 1150 351 0 0 0 chr12 74107074 74107113 -47150417 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1150 208 256 36 12 chr12 74108089 74108172 -47149358 + GA-rich Low_complexity Low_complexity 1 85 0 2 1150 2169 161 79 3 chr12 74109191 74109582 -47147948 + MTC LTR MaLR 1 421 0 2 1150 443 360 92 33 chr12 74109831 74110378 -47147152 - ERVL-B4-int LTR ERVL -2403 3264 2725 2 1150 270 73 0 0 chr12 74110427 74110468 -47147062 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1150 358 213 40 0 chr12 74111019 74111094 -47146436 - HERV16-int LTR ERVL -4913 83 6 2 1150 316 278 0 0 chr12 74111224 74111296 -47146234 - LTR16A LTR ERVL -181 270 199 2 1150 269 318 71 0 chr12 74111767 74111852 -47145678 + B3A SINE B2 70 160 -38 2 1150 414 39 0 0 chr12 74111856 74111908 -47145622 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1150 253 158 0 17 chr12 74112358 74112416 -47145114 + (TTAGGC)n Simple_repeat Simple_repeat 3 59 0 2 1150 492 276 9 0 chr12 74112589 74112705 -47144825 + PB1D10 SINE Alu 1 117 0 2 1150 681 197 16 8 chr12 74112727 74112855 -47144675 + B1_Mur2 SINE Alu 3 131 -18 2 1150 180 305 48 24 chr12 74112910 74112994 -47144536 - L3b LINE CR1 -203 279 194 2 1150 295 281 100 15 chr12 74114059 74114189 -47143341 - MIRb SINE MIR -42 226 86 2 1150 636 144 41 0 chr12 74114198 74114295 -47143235 + PB1D10 SINE Alu 10 110 -7 2 1150 321 267 13 0 chr12 74114469 74114544 -47142986 - ID4_ SINE ID -6 77 2 2 1150 1040 227 0 36 chr12 74114612 74114836 -47142694 - B3 SINE B2 0 216 1 2 1150 32 26 0 0 chr12 74114862 74114901 -47142629 + AT_rich Low_complexity Low_complexity 1 39 0 2 1150 381 262 0 0 chr12 74115161 74115241 -47142289 + ID2 SINE ID 4 83 0 2 1150 258 116 0 0 chr12 74116528 74116571 -47140959 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1150 1084 37 29 7 chr12 74116583 74116720 -47140810 + B1_Mm SINE Alu 1 140 -7 2 1150 243 0 0 0 chr12 74116733 74116760 -47140770 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1150 221 261 6 19 chr12 74116767 74116923 -47140607 + (CATA)n Simple_repeat Simple_repeat 2 155 0 2 1150 2379 154 31 24 chr12 74116976 74117394 -47140136 - MTC LTR MaLR 0 421 1 2 1150 325 207 42 50 chr12 74117478 74117598 -47139932 - PB1D10 SINE Alu 0 120 1 2 1150 208 234 0 45 chr12 74117844 74117911 -47139619 + GA-rich Low_complexity Low_complexity 1 64 0 2 1150 373 259 4 0 chr12 74117926 74118020 -47139510 + PB1D10 SINE Alu 13 109 -40 2 1150 530 198 190 0 chr12 74118131 74118247 -47139283 - B1_Mur1 SINE Alu -6 143 6 2 1150 979 207 0 0 chr12 74118270 74118444 -47139086 - B3 SINE B2 -6 210 37 2 1150 252 0 0 0 chr12 74118688 74118716 -47138814 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1150 435 305 25 0 chr12 74118718 74118836 -47138694 - RSINE1 SINE B4 -40 125 5 2 1150 527 223 0 18 chr12 74120338 74120452 -47137078 + PB1D7 SINE Alu 1 112 -8 2 1150 366 275 23 134 chr12 74121027 74121104 -47136426 + ID SINE ID 24 81 -143 2 1150 480 224 19 48 chr12 74121104 74121207 -47136323 + PB1D10 SINE Alu 4 103 -14 2 1150 591 15 0 0 chr12 74121208 74121276 -47136254 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 2 1150 695 121 6 159 chr12 74121319 74121476 -47136054 - B1_Mur3 SINE Alu 0 149 17 2 1150 396 0 0 0 chr12 74122414 74122458 -47135072 + (CAAAA)n Simple_repeat Simple_repeat 5 48 0 2 1150 1008 234 30 0 chr12 74122576 74122777 -47134753 + B3 SINE B2 1 207 -9 2 1150 22 0 0 0 chr12 74122777 74122799 -47134731 + AT_rich Low_complexity Low_complexity 1 22 0 3 1150 1167 134 5 5 chr12 74122804 74122991 -47134539 + B2_Mm2 SINE B2 1 187 -8 3 1150 225 154 0 0 chr12 74123093 74123132 -47134398 + T-rich Low_complexity Low_complexity 2 40 0 3 1150 242 280 64 10 chr12 74123166 74123264 -47134266 - B1F SINE Alu -11 106 6 3 1150 186 325 89 25 chr12 74123595 74123674 -47133856 - MIRc SINE MIR -70 198 115 3 1150 367 171 53 23 chr12 74123688 74123820 -47133710 + (TATAA)n Simple_repeat Simple_repeat 5 140 0 3 1150 522 312 181 9 chr12 74123927 74124249 -47133281 - ORR1E LTR MaLR -2 377 1 3 1150 261 146 0 0 chr12 74124310 74124358 -47133172 + (TTA)n Simple_repeat Simple_repeat 2 49 0 3 1150 205 312 0 0 chr12 74125105 74125153 -47132377 - MIRb SINE MIR -4 264 217 3 1150 320 242 7 0 chr12 74125174 74125245 -47132285 - ID4_ SINE ID -56 96 23 3 1150 270 314 29 29 chr12 74125267 74125372 -47132158 - PB1D10 SINE Alu -8 109 5 3 1150 549 319 52 52 chr12 74125409 74125595 -47131935 + Charlie4 DNA MER1_type 15 211 -1750 3 1150 1261 94 27 11 chr12 74125595 74125778 -47131752 - B2_Mm2 SINE B2 -9 186 1 3 1150 549 319 52 52 chr12 74125778 74125842 -47131688 + Charlie4 DNA MER1_type 212 265 -1696 3 1150 351 0 0 0 chr12 74125853 74125892 -47131638 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 1150 1209 78 0 0 chr12 74125893 74126047 -47131483 - B2_Mm2 SINE B2 -41 154 1 3 1150 231 216 191 74 chr12 74126049 74126102 -47131428 + Charlie4 DNA MER1_type 1707 1750 -211 3 1150 885 177 0 0 chr12 74126102 74126249 -47131281 + B1_Mus1 SINE Alu 2 148 0 3 1150 276 210 241 29 chr12 74126249 74126410 -47131120 + Charlie4 DNA MER1_type 1751 1946 -15 3 1150 588 263 51 51 chr12 74126461 74126657 -47130873 + MLT1L LTR MaLR 196 391 -219 3 1150 353 225 85 24 chr12 74126922 74126934 -47130596 + MT2B LTR ERVL 153 169 -432 3 1150 383 203 149 0 chr12 74126934 74127008 -47130522 + B1_Mur3 SINE Alu 4 88 -61 3 1150 250 348 106 47 chr12 74127036 74127055 -47130475 - L2 LINE L2 -464 2955 2937 3 1150 1369 103 0 0 chr12 74127055 74127211 -47130319 + B2_Mm2 SINE B2 2 157 -38 3 1150 369 0 0 0 chr12 74127211 74127252 -47130278 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 3 1150 1369 103 0 0 chr12 74127252 74127289 -47130241 + B2_Mm2 SINE B2 158 194 -1 3 1150 250 348 106 47 chr12 74127289 74127504 -47130026 - L2 LINE L2 -483 2936 2707 3 1150 233 316 20 59 chr12 74127775 74127793 -47129737 + MT2B2 LTR ERVL 145 158 -426 3 1150 312 333 0 0 chr12 74127793 74127880 -47129650 + PB1D10 SINE Alu 1 87 -30 3 1150 795 169 34 34 chr12 74127896 74128043 -47129487 - B1_Mur3 SINE Alu -2 147 1 3 1150 186 43 0 0 chr12 74128052 74128075 -47129455 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1150 296 221 143 0 chr12 74128088 74128165 -47129365 + PB1D9 SINE Alu 33 120 0 3 1150 206 128 26 0 chr12 74128176 74128215 -47129315 + GA-rich Low_complexity Low_complexity 2 41 0 3 1150 1041 74 0 0 chr12 74128229 74128377 -47129153 + (CAAGG)n Simple_repeat Simple_repeat 2 149 0 3 1150 366 295 19 0 chr12 74129150 74129255 -47128275 + RSINE1 SINE B4 4 110 -55 3 1150 753 102 59 0 chr12 74129532 74129650 -47127880 + B1_Mur4 SINE Alu 12 136 -14 3 1150 241 275 71 0 chr12 74130578 74130650 -47126880 + ID4 SINE ID 3 79 -73 3 1150 410 307 0 0 chr12 74130652 74130815 -47126715 + GA-rich Low_complexity Low_complexity 3 165 0 3 1150 304 341 119 62 chr12 74132001 74132195 -47125335 - AmnSINE1 SINE SINE -144 431 227 3 1150 1397 50 28 6 chr12 74132954 74133115 -47124415 + B2_Mm1a SINE B2 1 161 -32 3 1150 606 63 0 0 chr12 74133115 74133194 -47124336 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 3 1150 1397 50 28 6 chr12 74133194 74133213 -47124317 + B2_Mm1a SINE B2 162 185 -8 3 1150 486 0 0 0 chr12 74134678 74134732 -47122798 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1150 237 345 0 12 chr12 74135574 74135659 -47121871 - MIR SINE MIR -108 154 71 3 1150 450 0 0 0 chr12 74136493 74136543 -47120987 + (TCC)n Simple_repeat Simple_repeat 1 50 0 3 1150 453 258 197 6 chr12 74137429 74137612 -47119918 - Lx8 LINE L1 -42 7431 7214 3 1150 180 125 0 0 chr12 74139837 74139869 -47117661 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1150 432 0 0 0 chr12 74142743 74142791 -47114739 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1150 24 0 0 0 chr12 74144114 74144138 -47113392 + AT_rich Low_complexity Low_complexity 1 24 0 3 1150 200 176 0 0 chr12 74144171 74144205 -47113325 + GA-rich Low_complexity Low_complexity 3 36 0 3 1150 212 86 29 0 chr12 74146068 74146103 -47111427 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 3 1150 261 0 0 0 chr12 74148276 74148305 -47109225 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 3 1150 360 0 0 0 chr12 74148761 74148801 -47108729 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1150 23 0 0 0 chr12 74149541 74149564 -47107966 + AT_rich Low_complexity Low_complexity 1 23 0 3 1150 333 0 0 0 chr12 74152817 74152854 -47104676 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1150 258 32 0 0 chr12 74156927 74156958 -47100572 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1150 21 36 0 0 chr12 74158390 74158418 -47099112 + AT_rich Low_complexity Low_complexity 1 28 0 3 1150 234 0 0 0 chr12 74158426 74158452 -47099078 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1150 438 266 37 0 chr12 74158723 74158832 -47098698 + PB1D7 SINE Alu 7 119 -1 3 1150 353 253 13 0 chr12 74158934 74159013 -47098517 - ID4 SINE ID -1 82 3 3 1150 25 0 0 0 chr12 74159018 74159043 -47098487 + AT_rich Low_complexity Low_complexity 1 25 0 3 1150 1104 73 0 0 chr12 74159052 74159189 -47098341 + B1_Mm SINE Alu 1 137 -10 3 1150 333 0 0 0 chr12 74159911 74159948 -47097582 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1150 1141 51 0 7 chr12 74159948 74160087 -47097443 - B1_Mus2 SINE Alu -9 138 1 3 1150 660 195 0 8 chr12 74160441 74160560 -47096970 - PB1D9 SINE Alu 0 120 3 3 1150 1318 79 11 0 chr12 74160577 74160754 -47096776 - B2_Mm1t SINE B2 -14 179 1 3 1150 262 346 59 0 chr12 74161007 74161108 -47096422 - ID_B1 SINE B4 -104 120 14 3 1150 322 255 0 0 chr12 74161044 74161117 -47096413 - ID4_ SINE ID -6 77 5 3 1150 312 27 0 0 chr12 74161121 74161158 -47096372 + (CCA)n Simple_repeat Simple_repeat 2 38 0 3 1150 270 246 14 42 chr12 74161168 74161240 -47096290 - B1F SINE Alu -6 143 74 3 1150 657 38 0 0 chr12 74161240 74161320 -47096210 + (GGGAA)n Simple_repeat Simple_repeat 1 80 0 3 1150 1188 68 0 0 chr12 74161343 74161489 -47096041 + B1_Mus2 SINE Alu 1 146 -1 3 1150 1088 217 0 9 chr12 74161503 74161717 -47095813 + B3 SINE B2 5 216 0 3 1150 235 268 56 0 chr12 74161930 74162001 -47095529 + L2 LINE L2 930 1004 -2415 3 1150 384 277 19 0 chr12 74162371 74162463 -47095067 + ID4 SINE ID 1 98 -54 3 1150 663 335 27 0 chr12 74162496 74162681 -47094849 + B4A SINE B4 3 192 -100 3 1150 444 292 25 55 chr12 74162907 74163070 -47094460 - RSINE1 SINE B4 -6 159 2 3 1150 1549 250 84 43 chr12 74163152 74163174 -47094356 - RMER19C LTR ERVK -32 579 553 3 1150 423 0 0 0 chr12 74163174 74163221 -47094309 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1150 1549 250 84 43 chr12 74163221 74163637 -47093893 - RMER19C LTR ERVK -59 552 124 3 1150 974 116 56 77 chr12 74163940 74164136 -47093394 + B2_Mm2 SINE B2 1 192 -3 3 1150 228 227 29 29 chr12 74164210 74164278 -47093252 + L1MA9 LINE L1 5364 5431 -860 3 1150 1162 98 40 89 chr12 74164304 74164506 -47093024 + B2_Mm2 SINE B2 2 193 -2 3 1150 946 96 13 40 chr12 74164529 74164681 -47092849 + B1_Mur4 SINE Alu 1 148 -2 3 1150 382 280 25 0 chr12 74164708 74164826 -47092704 + L1MA9 LINE L1 5442 5562 -729 3 1150 295 329 13 85 chr12 74164991 74165144 -47092386 - RMER4B LTR ERVK -422 163 22 3 1150 427 247 48 48 chr12 74165246 74165385 -47092145 + B1F SINE Alu 11 148 -1 3 1150 679 272 33 122 chr12 74165453 74165813 -47091717 + L1MA9 LINE L1 5772 6099 -213 3 1150 407 301 233 40 chr12 74165840 74165888 -47091642 + Lx8 LINE L1 7170 7210 -263 3 1150 1189 48 7 0 chr12 74165888 74166034 -47091496 - B1_Mus2 SINE Alu 0 147 1 3 1150 407 301 233 40 chr12 74166034 74166234 -47091296 + Lx8 LINE L1 7211 7466 -7 3 1150 1125 99 81 11 chr12 74166269 74166282 -47091248 - B2_Mm1t SINE B2 -6 187 175 3 1150 249 33 0 0 chr12 74166282 74166312 -47091218 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1150 1190 84 9 0 chr12 74166312 74166472 -47091058 - B2_Mm2 SINE B2 -19 174 2 3 1150 550 226 77 6 chr12 74166472 74166641 -47090889 + L1MA9 LINE L1 6125 6305 -7 3 1150 198 0 0 0 chr12 74166698 74166720 -47090810 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 3 1150 1131 56 27 20 chr12 74166720 74166855 -47090675 - B1_Mus2 SINE Alu -8 139 1 3 1150 714 220 0 30 chr12 74166864 74166995 -47090535 - B1_Mur1 SINE Alu -1 148 22 3 1150 1948 161 50 8 chr12 74167069 74167432 -47090098 - ORR1C1 LTR MaLR 0 378 1 3 1150 313 234 26 0 chr12 74167449 74167526 -47090004 - B3 SINE B2 -135 81 3 3 1150 186 103 0 0 chr12 74167526 74167555 -47089975 + (TCTG)n Simple_repeat Simple_repeat 3 31 0 3 1150 565 248 15 8 chr12 74167567 74167701 -47089829 - B1_Mur1 SINE Alu -13 136 2 3 1150 651 75 15 12 chr12 74167772 74167886 -47089644 - B1_Mus2 SINE Alu -1 148 38 3 1150 482 242 178 12 chr12 74168202 74168365 -47089165 - ORR1E LTR MaLR -169 190 1 3 1150 1535 49 5 0 chr12 74168395 74168580 -47088950 - B2_Mm1a SINE B2 -6 187 2 3 1150 1187 69 0 0 chr12 74168633 74168778 -47088752 + B1_Mus1 SINE Alu 2 146 -2 3 1150 425 284 28 7 chr12 74169396 74169538 -47087992 - B1F1 SINE Alu -3 146 2 3 1150 21 0 0 0 chr12 74169714 74169735 -47087795 + AT_rich Low_complexity Low_complexity 1 21 0 3 1150 589 315 0 0 chr12 74169852 74169995 -47087535 - RSINE1 SINE B4 0 165 23 3 1150 2379 205 176 85 chr12 74170129 74171094 -47086436 + RMER1B Other Other 82 1055 -11 3 1150 420 20 0 0 chr12 74171112 74171161 -47086369 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1150 362 319 43 29 chr12 74171184 74171323 -47086207 - RSINE1 SINE B4 -21 144 4 3 1150 243 0 0 0 chr12 74171384 74171411 -47086119 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1150 1055 73 7 0 chr12 74171411 74171548 -47085982 - B1_Mus2 SINE Alu -9 138 1 4 1150 691 231 0 0 chr12 74171609 74171739 -47085791 - B3 SINE B2 -86 130 1 4 1150 217 0 61 0 chr12 74171752 74171785 -47085745 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1150 2993 106 193 33 chr12 74171856 74172373 -47085157 + MT2B LTR ERVL 2 601 0 4 1150 1050 141 0 0 chr12 74172399 74172548 -47084982 + B1_Mur4 SINE Alu 2 150 0 4 1150 969 126 17 6 chr12 74172562 74172737 -47084793 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 4 1150 476 295 40 7 chr12 74172778 74172928 -47084602 + B3A SINE B2 3 157 -41 4 1150 390 21 0 0 chr12 74172933 74172980 -47084550 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1150 669 58 0 0 chr12 74172997 74173083 -47084447 + (GGGA)n Simple_repeat Simple_repeat 4 89 0 4 1150 747 0 0 0 chr12 74173083 74173165 -47084365 + (GGAAA)n Simple_repeat Simple_repeat 2 84 0 4 1150 235 338 0 0 chr12 74173509 74173580 -47083950 - RMER15 LTR ERVL -113 462 392 4 1150 3466 255 62 20 chr12 74173583 74174495 -47083035 - Lx8 LINE L1 -274 7199 6249 4 1150 615 62 0 0 chr12 74174532 74174612 -47082918 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1150 212 177 0 46 chr12 74174625 74174690 -47082840 + (TTTAA)n Simple_repeat Simple_repeat 4 65 0 4 1150 963 200 89 0 chr12 74174691 74174881 -47082649 - B3 SINE B2 -9 207 1 4 1150 24 85 0 0 chr12 74174884 74174943 -47082587 + AT_rich Low_complexity Low_complexity 1 59 0 4 1150 480 86 0 0 chr12 74175092 74175162 -47082368 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1150 4515 14 0 0 chr12 74175217 74175710 -47081820 + MT2_Mm LTR ERVL 1 493 0 4 1150 48453 15 6 0 chr12 74175710 74181036 -47076494 + MERVL-int LTR ERVL 1 5360 -125 4 1150 362 167 46 35 chr12 74181036 74181123 -47076407 + ORR1A3-int LTR MaLR 553 640 -1323 4 1150 321 0 0 0 chr12 74181123 74181161 -47076369 + MERVL-int LTR ERVL 5448 5485 0 4 1150 4515 14 0 0 chr12 74181161 74181654 -47075876 + MT2_Mm LTR ERVL 1 493 0 4 1150 21 57 0 0 chr12 74181797 74181832 -47075698 + AT_rich Low_complexity Low_complexity 1 35 0 4 1150 886 85 139 0 chr12 74181953 74182082 -47075448 - B1_Mus1 SINE Alu -1 147 1 4 1150 26 74 0 0 chr12 74182127 74182181 -47075349 + AT_rich Low_complexity Low_complexity 1 54 0 4 1150 775 169 14 7 chr12 74182293 74182436 -47075094 - B1_Mur4 SINE Alu 0 150 7 4 1150 732 169 0 17 chr12 74182452 74182633 -47074897 + CT-rich Low_complexity Low_complexity 1 178 0 4 1150 1136 62 0 20 chr12 74182743 74182892 -47074638 - B1_Mus2 SINE Alu -1 146 1 4 1150 906 172 31 77 chr12 74183036 74183108 -47074422 - B2_Mm2 SINE B2 -9 186 123 4 1150 1626 52 0 0 chr12 74183108 74183300 -47074230 + B2_Mm1a SINE B2 2 193 0 4 1150 906 172 31 77 chr12 74183300 74183422 -47074108 - B2_Mm2 SINE B2 -73 122 1 4 1150 326 306 18 0 chr12 74183728 74183839 -47073691 + PB1D10 SINE Alu 5 117 0 4 1150 601 253 73 7 chr12 74184447 74184598 -47072932 + B3 SINE B2 1 161 -55 4 1150 423 83 0 0 chr12 74184600 74184660 -47072870 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1150 615 237 0 30 chr12 74185522 74185657 -47071873 - B1_Mur1 SINE Alu -16 133 3 4 1150 202 152 0 33 chr12 74185918 74185979 -47071551 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1150 236 180 78 47 chr12 74186085 74186149 -47071381 + RLTR25B LTR ERVK 427 492 -536 4 1150 709 31 51 0 chr12 74186101 74186199 -47071331 + B1_Mus2 SINE Alu 45 147 0 4 1150 1681 186 12 116 chr12 74186220 74186633 -47070897 - ORR1D1 LTR MaLR 0 374 5 4 1151 920 186 58 54 chr12 74187544 74187749 -47069781 + B3 SINE B2 1 206 -10 4 1151 633 256 22 0 chr12 74187785 74187922 -47069608 + B1_Mur1 SINE Alu 1 140 -9 4 1151 286 181 41 14 chr12 74188351 74188424 -47069106 + PB1D10 SINE Alu 43 117 0 4 1151 426 263 190 17 chr12 74188569 74188801 -47068729 - B4A SINE B4 -18 274 3 4 1151 267 103 0 0 chr12 74189319 74189358 -47068172 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1151 848 116 87 0 chr12 74189358 74189496 -47068034 - B1_Mur4 SINE Alu 0 150 1 4 1151 206 308 41 41 chr12 74189504 74189626 -47067904 - L2a LINE L2 0 3426 3305 4 1151 262 232 0 8 chr12 74189750 74189821 -47067709 + L1MB4 LINE L1 5896 5965 -213 4 1151 1347 258 91 51 chr12 74189844 74190297 -47067233 - RMER19C LTR ERVK 0 611 141 4 1151 444 150 0 0 chr12 74190329 74190409 -47067121 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1151 239 250 0 0 chr12 74190432 74190484 -47067046 + L1MB4 LINE L1 6054 6105 -66 4 1151 229 228 25 25 chr12 74190487 74190568 -47066962 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1151 684 146 247 60 chr12 74190697 74190879 -47066651 - B3 SINE B2 0 216 1 4 1151 746 235 74 10 chr12 74190882 74190921 -47066609 - B3 SINE B2 0 216 165 4 1151 330 67 0 0 chr12 74190921 74190966 -47066564 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1151 746 235 74 10 chr12 74190966 74191128 -47066402 - B3 SINE B2 -52 164 2 4 1151 496 283 23 8 chr12 74191133 74191261 -47066269 - B1F SINE Alu -16 133 4 4 1151 977 251 9 5 chr12 74191284 74191496 -47066034 - B3 SINE B2 0 216 4 4 1151 284 217 0 0 chr12 74191498 74191567 -47065963 + L1MB3 LINE L1 6113 6181 -2 4 1151 421 284 105 26 chr12 74191647 74191799 -47065731 - RSINE1 SINE B4 0 165 2 4 1151 423 0 0 0 chr12 74192530 74192577 -47064953 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1151 289 262 18 80 chr12 74192592 74192704 -47064826 - B4A SINE B4 -2 290 186 4 1151 1069 121 0 0 chr12 74192797 74192946 -47064584 + B1_Mur3 SINE Alu 1 149 0 4 1151 520 331 16 16 chr12 74192950 74193134 -47064396 - B3A SINE B2 -9 189 6 4 1151 259 300 29 44 chr12 74193894 74194007 -47063523 + ID_B1 SINE B4 25 134 -90 4 1151 624 269 82 60 chr12 74194065 74194346 -47063184 + B4A SINE B4 2 288 -4 4 1151 194 128 26 0 chr12 74194360 74194399 -47063131 + (CATA)n Simple_repeat Simple_repeat 1 40 0 4 1151 369 274 28 9 chr12 74194426 74194533 -47062997 + PB1D10 SINE Alu 2 110 -7 4 1151 259 203 94 0 chr12 74194543 74194607 -47062923 + ID2 SINE ID 3 72 -11 4 1151 415 241 17 67 chr12 74194671 74194791 -47062739 + PB1D9 SINE Alu 1 114 -6 4 1151 180 0 0 0 chr12 74194791 74194811 -47062719 + (TTC)n Simple_repeat Simple_repeat 2 21 0 4 1151 423 245 19 9 chr12 74194971 74195078 -47062452 + RSINE1 SINE B4 6 113 -52 4 1151 317 24 24 0 chr12 74195078 74195120 -47062410 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1151 236 235 283 38 chr12 74195295 74195401 -47062129 + RSINE1 SINE B4 3 134 -31 4 1151 402 39 0 0 chr12 74195407 74195459 -47062071 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1151 853 103 7 46 chr12 74195999 74196151 -47061379 + B1_Mus1 SINE Alu 3 148 0 4 1151 21 36 0 0 chr12 74196240 74196268 -47061262 + AT_rich Low_complexity Low_complexity 1 28 0 4 1151 577 274 118 6 chr12 74196268 74196437 -47061093 - B3 SINE B2 -1 215 28 4 1151 257 0 0 29 chr12 74196528 74196562 -47060968 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1151 1147 69 0 0 chr12 74196562 74196698 -47060832 - B1_Mus1 SINE Alu -9 139 4 4 1151 243 207 0 241 chr12 74197316 74197381 -47060149 + ID4 SINE ID 2 56 -27 4 1151 1141 49 14 0 chr12 74197381 74197525 -47060005 + B1_Mm SINE Alu 2 147 0 4 1151 243 207 0 241 chr12 74197525 74197567 -47059963 + ID4 SINE ID 57 83 0 4 1151 554 75 0 12 chr12 74197714 74197736 -47059794 + (GAAAA)n Simple_repeat Simple_repeat 3 24 0 4 1151 1287 20 0 0 chr12 74197736 74197883 -47059647 + B1_Mm SINE Alu 1 147 0 4 1151 554 75 0 12 chr12 74197883 74197941 -47059589 + (GAAAA)n Simple_repeat Simple_repeat 5 62 0 4 1151 1218 181 90 132 chr12 74198120 74198507 -47059023 + RMER19B LTR ERVK 3 373 -529 4 1151 232 266 0 30 chr12 74200293 74200339 -47057191 + polypyrimidine Low_complexity Low_complexity 24 67 0 4 1151 1103 29 50 7 chr12 74200339 74200480 -47057050 - B1_Mm SINE Alu 0 147 1 4 1151 232 266 0 30 chr12 74200480 74200499 -47057031 + polypyrimidine Low_complexity Low_complexity 5 23 0 4 1151 924 140 0 74 chr12 74202924 74203086 -47054444 + B1_Mur4 SINE Alu 1 150 0 4 1151 255 21 62 21 chr12 74203534 74203582 -47053948 + (CAAAAA)n Simple_repeat Simple_repeat 6 55 0 4 1151 297 0 0 0 chr12 74203892 74203925 -47053605 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1151 207 0 0 0 chr12 74204010 74204033 -47053497 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1151 361 178 67 27 chr12 74205714 74205789 -47051741 + PB1D7 SINE Alu 43 120 0 4 1151 1238 34 7 0 chr12 74206773 74206920 -47050610 + B1_Mus1 SINE Alu 1 148 0 4 1151 777 184 7 20 chr12 74207385 74207535 -47049995 - B1_Mur4 SINE Alu -2 148 1 4 1151 386 267 34 94 chr12 74207821 74207970 -47049560 - B1F1 SINE Alu -5 144 5 4 1151 676 136 104 0 chr12 74208177 74208302 -47049228 + B1_Mus1 SINE Alu 5 142 -6 4 1151 195 42 0 0 chr12 74208337 74208361 -47049169 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 4 1151 221 159 0 0 chr12 74208763 74208807 -47048723 + A-rich Low_complexity Low_complexity 4 47 0 4 1151 26 0 0 0 chr12 74209300 74209326 -47048204 + AT_rich Low_complexity Low_complexity 1 26 0 4 1151 1156 29 0 7 chr12 74210549 74210686 -47046844 + B1_Mus2 SINE Alu 1 136 -11 4 1151 233 29 0 29 chr12 74210687 74210722 -47046808 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1151 333 0 0 0 chr12 74211676 74211713 -47045817 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1151 369 145 0 0 chr12 74212205 74212267 -47045263 + (CAA)n Simple_repeat Simple_repeat 3 64 0 4 1151 180 97 0 0 chr12 74212287 74212318 -47045212 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1151 198 0 0 0 chr12 74212354 74212376 -47045154 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 5 1151 204 40 0 0 chr12 74212392 74212417 -47045113 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1151 352 252 9 61 chr12 74214186 74214300 -47043230 + CT-rich Low_complexity Low_complexity 1 108 0 5 1151 22 0 0 0 chr12 74214449 74214471 -47043059 + GC_rich Low_complexity Low_complexity 1 22 0 5 1151 573 15 0 0 chr12 74215192 74215258 -47042272 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1151 975 41 40 20 chr12 74215704 74215854 -47041676 + (TTCCC)n Simple_repeat Simple_repeat 4 156 0 5 1151 784 181 6 11 chr12 74215867 74216021 -47041509 + CT-rich Low_complexity Low_complexity 27 178 0 5 1151 1206 54 7 0 chr12 74216021 74216168 -47041362 - B1_Mus1 SINE Alu 0 148 1 5 1151 784 181 6 11 chr12 74216168 74216192 -47041338 + polypyrimidine Low_complexity Low_complexity 2 26 0 5 1151 550 222 10 198 chr12 74216264 74216466 -47041064 - RSINE1 SINE B4 0 165 2 5 1151 369 234 84 97 chr12 74216676 74216913 -47040617 - L1MD3 LINE L1 -13 7982 7537 5 1151 232 329 25 62 chr12 74216966 74217047 -47040483 + MIRm SINE MIR 4 81 -195 5 1151 563 74 12 0 chr12 74217954 74218035 -47039495 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 5 1151 566 191 101 14 chr12 74218063 74218201 -47039329 - B1_Mur4 SINE Alu 0 150 1 5 1151 245 309 0 80 chr12 74218260 74218348 -47039182 - RSINE1 SINE B4 -2 163 83 5 1151 216 0 0 0 chr12 74219011 74219035 -47038495 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1151 339 217 30 80 chr12 74219449 74219518 -47038012 - ORR1E LTR MaLR -7 372 307 5 1151 486 49 0 0 chr12 74219518 74219579 -47037951 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 5 1151 339 217 30 80 chr12 74219579 74219609 -47037921 - ORR1E LTR MaLR -73 306 278 5 1151 324 0 0 0 chr12 74219663 74219699 -47037831 + (CCCCCA)n Simple_repeat Simple_repeat 2 37 0 5 1151 362 281 0 0 chr12 74219699 74219788 -47037742 - ORR1E LTR MaLR -226 133 45 5 1151 405 0 0 0 chr12 74219797 74219842 -47037688 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1151 249 196 0 0 chr12 74220572 74220628 -47036902 + (CAT)n Simple_repeat Simple_repeat 2 57 0 5 1151 938 133 7 27 chr12 74220628 74220775 -47036755 - B1_Mus2 SINE Alu 0 147 4 5 1151 210 143 0 0 chr12 74220856 74220891 -47036639 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 1151 1172 61 7 0 chr12 74220892 74221040 -47036490 - B1_Mur4 SINE Alu 0 150 2 5 1151 259 0 98 0 chr12 74221492 74221533 -47035997 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 5 1151 498 227 129 0 chr12 74222064 74222196 -47035334 + B1F SINE Alu 1 149 0 5 1151 321 305 85 8 chr12 74222250 74222379 -47035151 + Lx7 LINE L1 7162 7300 -396 5 1151 274 140 34 23 chr12 74222406 74222486 -47035044 + GA-rich Low_complexity Low_complexity 2 83 0 5 1151 1061 6 11 58 chr12 74222486 74222675 -47034855 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1151 551 285 44 0 chr12 74222821 74222979 -47034551 + RSINE1 SINE B4 1 165 0 5 1151 885 130 13 52 chr12 74223284 74223438 -47034092 + B1_Mur3 SINE Alu 2 149 0 5 1151 1020 124 11 6 chr12 74223570 74223749 -47033781 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1151 840 159 14 14 chr12 74223759 74223906 -47033624 - B1_Mus1 SINE Alu -1 147 1 5 1151 212 164 57 43 chr12 74224139 74224191 -47033339 + T-rich Low_complexity Low_complexity 22 76 0 5 1151 542 220 68 8 chr12 74224191 74224324 -47033206 - B1F SINE Alu -7 142 2 5 1151 212 164 57 43 chr12 74224324 74224341 -47033189 + T-rich Low_complexity Low_complexity 6 21 0 5 1151 21 57 0 0 chr12 74225245 74225280 -47032250 + AT_rich Low_complexity Low_complexity 1 35 0 5 1151 194 0 39 0 chr12 74226531 74226557 -47030973 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1151 348 251 52 114 chr12 74226619 74226812 -47030718 - L1MC5 LINE L1 -519 7442 7262 5 1151 430 373 7 7 chr12 74226957 74227108 -47030422 - B4A SINE B4 -137 155 5 5 1151 368 211 14 0 chr12 74227133 74227204 -47030326 - B1F SINE Alu 0 149 78 5 1151 396 281 9 37 chr12 74227697 74227804 -47029726 + RSINE1 SINE B4 55 158 -7 5 1151 251 279 44 0 chr12 74228495 74228509 -47029021 + B4 SINE B4 73 143 -149 5 1151 293 204 56 0 chr12 74228509 74228563 -47028967 + B1_Mus2 SINE Alu 2 58 -89 5 1151 575 193 0 73 chr12 74228599 74228722 -47028808 - PB1D9 SINE Alu 0 120 7 5 1151 297 336 0 70 chr12 74228622 74228737 -47028793 - ID_B1 SINE B4 -45 179 73 5 1151 385 174 58 0 chr12 74228734 74228803 -47028727 + B1_Mur1 SINE Alu 58 130 -19 5 1151 568 181 8 8 chr12 74228805 74228933 -47028597 + GA-rich Low_complexity Low_complexity 3 130 0 5 1151 1097 66 0 0 chr12 74230275 74230411 -47027119 + B1_Mus2 SINE Alu 2 137 -10 5 1151 486 0 0 0 chr12 74230411 74230465 -47027065 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1151 923 134 246 0 chr12 74230474 74230645 -47026885 + B3 SINE B2 1 213 -3 5 1151 203 197 29 57 chr12 74230754 74230824 -47026706 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 5 1151 806 284 124 31 chr12 74230824 74231082 -47026448 - B4A SINE B4 -2 290 9 5 1151 189 0 0 0 chr12 74231870 74231891 -47025639 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 5 1151 1143 84 0 0 chr12 74231903 74232081 -47025449 + (TCC)n Simple_repeat Simple_repeat 3 180 0 5 1151 402 21 0 0 chr12 74232087 74232134 -47025396 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1151 337 284 138 28 chr12 74232272 74232417 -47025113 - HAL1-3A_ME LINE L1 -414 2444 2284 5 1151 414 0 0 0 chr12 74232417 74232463 -47025067 + (TCCC)n Simple_repeat Simple_repeat 2 47 0 5 1151 280 352 67 0 chr12 74232463 74232568 -47024962 - PB1D10 SINE Alu -5 112 1 5 1151 695 203 80 0 chr12 74232765 74232903 -47024627 + B1_Mur1 SINE Alu 1 149 0 5 1151 216 135 0 0 chr12 74232903 74232940 -47024590 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1151 225 313 0 50 chr12 74233075 74233196 -47024334 - L1M5 LINE L1 -317 5847 5733 5 1151 954 118 0 0 chr12 74233242 74233667 -47023863 + (TG)n Simple_repeat Simple_repeat 1 425 0 5 1151 22 0 0 0 chr12 74233719 74233741 -47023789 + AT_rich Low_complexity Low_complexity 1 22 0 5 1151 310 262 18 61 chr12 74233751 74233865 -47023665 - L1M5 LINE L1 -1162 4984 4876 5 1151 539 214 36 58 chr12 74233898 74234037 -47023493 + B1F1 SINE Alu 9 144 -5 5 1151 1203 61 0 0 chr12 74234140 74234287 -47023243 + B1_Mus2 SINE Alu 1 147 0 5 1151 280 97 16 16 chr12 74234315 74234378 -47023152 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 5 1151 347 281 120 38 chr12 74234405 74234906 -47022624 - L1M5 LINE L1 -1405 4741 4178 5 1151 490 281 50 0 chr12 74234948 74235069 -47022461 - ID_B1 SINE B4 -10 214 88 5 1151 266 140 68 34 chr12 74235357 74235416 -47022114 - B3 SINE B2 -6 210 150 5 1151 376 224 12 12 chr12 74235629 74235715 -47021815 - B4A SINE B4 -2 290 205 5 1151 434 261 189 0 chr12 74235733 74235844 -47021686 - RSINE1 SINE B4 -30 135 4 5 1151 17564 54 10 86 chr12 74235872 74236312 -47021218 - L1VL4 LINE L1 -2 3557 3135 5 1151 1495 29 0 0 chr12 74236312 74236485 -47021045 - B2_Mm1a SINE B2 -19 174 2 5 1151 17564 54 10 86 chr12 74236485 74236522 -47021008 - L1VL4 LINE L1 -425 3134 3127 5 1151 279 0 0 0 chr12 74236522 74236553 -47020977 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 5 1151 1301 44 0 0 chr12 74236553 74236712 -47020818 - B2_Mm1t SINE B2 -33 160 2 5 1151 17564 54 10 86 chr12 74236712 74237492 -47020038 - L1VL4 LINE L1 -433 3126 2358 5 1151 1612 16 5 5 chr12 74237492 74237680 -47019850 - B2_Mm1a SINE B2 -4 189 2 5 1151 17564 54 10 86 chr12 74237680 74238904 -47018626 - L1VL4 LINE L1 -1202 2357 1137 5 1151 1621 47 0 0 chr12 74238904 74239097 -47018433 - B2_Mm1a SINE B2 0 193 1 5 1151 17564 64 6 35 chr12 74239097 74239810 -47017720 - L1VL4 LINE L1 -2423 1136 421 5 1151 306 273 20 20 chr12 74240133 74240234 -47017296 + CT-rich Low_complexity Low_complexity 2 102 0 5 1151 1046 89 0 14 chr12 74240600 74240748 -47016782 - B1_Mus1 SINE Alu -1 147 2 5 1151 43 20 0 0 chr12 74240847 74240897 -47016633 + AT_rich Low_complexity Low_complexity 1 50 0 5 1151 634 231 30 0 chr12 74241030 74241164 -47016366 - B1_Mur1 SINE Alu -7 142 5 5 1151 324 372 0 0 chr12 74241342 74241455 -47016075 - PB1D7 SINE Alu -7 113 1 5 1151 1356 168 15 30 chr12 74241846 74242110 -47015420 + RMER19B LTR ERVK 643 902 0 5 1151 479 200 227 0 chr12 74242683 74242793 -47014737 + RSINE1 SINE B4 2 136 -29 5 1151 499 15 29 0 chr12 74242815 74242883 -47014647 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1151 216 0 0 0 chr12 74242883 74242906 -47014624 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1151 1168 35 0 14 chr12 74243115 74243258 -47014272 + B1_Mus1 SINE Alu 1 141 -7 5 1151 477 62 0 0 chr12 74243258 74243323 -47014207 + (CCAA)n Simple_repeat Simple_repeat 2 66 0 5 1151 1422 231 88 20 chr12 74243925 74244278 -47013252 + MTE2b LTR MaLR 3 379 0 5 1151 2035 159 108 2 chr12 74244422 74244883 -47012647 - Lx9 LINE L1 -1 7643 7134 5 1151 333 178 84 0 chr12 74244879 74244986 -47012544 - MusHAL1 LINE L1 -2483 229 114 5 1151 2366 229 99 135 chr12 74244988 74246363 -47011167 - RMER1A Other Other -10 1020 15 5 1151 622 148 0 9 chr12 74246895 74247004 -47010526 - Lx9 LINE L1 -498 7146 7039 5 1151 23 68 0 0 chr12 74247233 74247277 -47010253 + AT_rich Low_complexity Low_complexity 1 44 0 5 1151 469 270 17 34 chr12 74247383 74247502 -47010028 + PB1D10 SINE Alu 1 117 0 5 1151 189 0 0 0 chr12 74247575 74247596 -47009934 + (C)n Simple_repeat Simple_repeat 1 21 0 5 1151 847 43 145 0 chr12 74247596 74247713 -47009817 - B1_Mus2 SINE Alu -13 134 1 5 1151 388 233 0 0 chr12 74248879 74248952 -47008578 + ID4 SINE ID 1 73 -10 5 1151 267 264 0 0 chr12 74248967 74249145 -47008385 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1151 292 306 282 0 chr12 74249271 74249395 -47008135 - RSINE1 SINE B4 -4 161 3 5 1151 587 162 120 0 chr12 74249868 74249985 -47007545 - B1_Mur1 SINE Alu -17 132 2 5 1151 576 42 0 0 chr12 74250041 74250112 -47007418 + (TTCTC)n Simple_repeat Simple_repeat 4 74 0 6 1151 256 277 71 71 chr12 74250266 74250406 -47007124 + B1F SINE Alu 1 140 -9 6 1151 547 282 14 0 chr12 74250424 74250566 -47006964 + RSINE1 SINE B4 3 146 -19 6 1151 32 26 0 0 chr12 74250609 74250648 -47006882 + AT_rich Low_complexity Low_complexity 1 39 0 6 1151 264 213 0 0 chr12 74250728 74250789 -47006741 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1151 287 257 14 0 chr12 74251079 74251149 -47006381 + ID4_ SINE ID 2 72 -11 6 1151 254 301 36 0 chr12 74251653 74251736 -47005794 - MIR3 SINE MIR -29 179 94 6 1151 1526 33 43 0 chr12 74252273 74252457 -47005073 + B2_Mm1a SINE B2 2 193 0 6 1151 1596 37 11 0 chr12 74252524 74252714 -47004816 - B2_Mm1a SINE B2 -1 192 1 6 1151 483 240 29 3 chr12 74253313 74253421 -47004109 - PB1D7 SINE Alu -6 114 4 6 1151 971 62 8 0 chr12 74253965 74254093 -47003437 - B1_Mus1 SINE Alu 0 148 20 6 1151 241 305 65 60 chr12 74254115 74254139 -47003391 - B2_Mm2 SINE B2 -8 187 2 6 1151 668 302 25 12 chr12 74254139 74254300 -47003230 - RSINE1 SINE B4 0 165 3 6 1151 399 196 129 78 chr12 74254353 74254469 -47003061 - B4A SINE B4 0 292 171 6 1151 500 264 19 191 chr12 74254785 74255042 -47002488 + ID_B1 SINE B4 2 214 -10 6 1151 417 121 0 0 chr12 74255666 74255749 -47001781 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1151 445 295 183 25 chr12 74255789 74256029 -47001501 - B4A SINE B4 -14 278 1 6 1151 7660 47 16 0 chr12 74256232 74257752 -46999778 - L1Md_F2 LINE L1 0 6582 5038 6 1151 1424 40 79 0 chr12 74257804 74257820 -46999710 - B2_Mm1t SINE B2 -2 191 176 6 1151 315 0 0 0 chr12 74257820 74257855 -46999675 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 6 1151 1424 40 79 0 chr12 74257855 74258015 -46999515 - B2_Mm1t SINE B2 -18 175 2 6 1151 206 316 0 38 chr12 74258015 74258094 -46999436 - MIRb SINE MIR -6 262 187 6 1151 1427 199 72 24 chr12 74258147 74258482 -46999048 - Lx6 LINE L1 -4 7456 7106 6 1151 350 136 0 0 chr12 74258523 74258582 -46998948 - URR1B DNA MER1_type -84 141 83 6 1151 292 296 0 0 chr12 74259245 74259316 -46998214 + ID4 SINE ID 3 73 -10 6 1151 573 263 80 0 chr12 74259565 74259702 -46997828 - B1F1 SINE Alu -1 148 1 6 1151 854 125 81 0 chr12 74259730 74259866 -46997664 - B1_Mus1 SINE Alu -1 147 1 6 1151 738 175 36 14 chr12 74259866 74259995 -46997535 - B1_Mur2 SINE Alu -9 140 7 6 1151 327 221 15 0 chr12 74260074 74260142 -46997388 + B4 SINE B4 8 76 -216 6 1151 332 314 45 25 chr12 74260399 74260556 -46996974 + HERV16-int LTR ERVL 1996 2155 -2841 6 1151 376 284 67 29 chr12 74260912 74261017 -46996513 + PB1D10 SINE Alu 1 109 -8 6 1151 364 332 53 34 chr12 74261202 74261408 -46996122 + ERVL-E-int LTR ERVL 4753 4962 -705 6 1151 447 344 113 28 chr12 74261804 74262077 -46995453 - L1M5 LINE L1 -847 5299 5000 6 1151 336 64 0 0 chr12 74262077 74262124 -46995406 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 1151 857 77 119 30 chr12 74262131 74262265 -46995265 - B1_Mus1 SINE Alu 0 148 3 6 1151 447 344 113 28 chr12 74262265 74262416 -46995114 - L1M5 LINE L1 -1152 4994 4831 6 1151 505 259 40 47 chr12 74262417 74262567 -46994963 - B1F SINE Alu 0 149 1 6 1151 203 329 0 12 chr12 74263371 74263454 -46994076 + CT-rich Low_complexity Low_complexity 4 85 0 6 1151 348 355 0 18 chr12 74263454 74263566 -46993964 - PB1 SINE Alu -14 113 4 6 1151 605 192 44 37 chr12 74263596 74263731 -46993799 + B1F SINE Alu 1 136 -13 6 1151 822 256 185 0 chr12 74263909 74264265 -46993265 - L1MB5 LINE L1 -228 5946 5525 6 1151 400 251 154 27 chr12 74264320 74264568 -46992962 - L1M2 LINE L1 -734 5430 5148 6 1151 609 184 120 0 chr12 74264569 74264694 -46992836 - B1_Mus2 SINE Alu -7 140 1 6 1151 452 283 15 30 chr12 74264749 74264880 -46992650 - B3A SINE B2 -69 129 1 6 1151 521 269 29 15 chr12 74265169 74265305 -46992225 - B1F1 SINE Alu -10 139 2 6 1151 930 222 61 6 chr12 74265941 74266122 -46991408 + B3 SINE B2 1 191 -25 6 1151 216 0 0 0 chr12 74266172 74266196 -46991334 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1151 2049 127 100 11 chr12 74266946 74267297 -46990233 + ORR1C2 LTR MaLR 1 382 -2 6 1151 233 253 34 22 chr12 74267436 74267525 -46990005 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 6 1151 464 306 107 42 chr12 74267528 74267791 -46989739 - B4A SINE B4 -10 282 3 6 1151 582 103 0 0 chr12 74268139 74268226 -46989304 + (GGGA)n Simple_repeat Simple_repeat 3 89 0 6 1151 1053 253 70 16 chr12 74268226 74268483 -46989047 - B4A SINE B4 -21 271 1 6 1151 183 80 0 0 chr12 74268797 74268822 -46988708 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 6 1151 242 246 30 15 chr12 74269681 74269747 -46987783 - ID4_ SINE ID -15 68 2 6 1151 560 246 28 22 chr12 74269781 74269968 -46987562 - B3A SINE B2 0 216 29 6 1151 360 0 0 0 chr12 74269971 74270011 -46987519 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1151 225 162 22 187 chr12 74270369 74270460 -46987070 + RMER3D1 LTR ERVK 124 199 -425 6 1151 841 163 8 0 chr12 74270702 74270831 -46986699 - B1_Mur4 SINE Alu -19 131 2 6 1151 1217 41 0 0 chr12 74271029 74271176 -46986354 + B1_Mus1 SINE Alu 2 148 0 6 1151 354 23 0 0 chr12 74271188 74271231 -46986299 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1151 276 30 0 0 chr12 74271388 74271421 -46986109 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1151 551 250 14 43 chr12 74272313 74272451 -46985079 + RSINE1 SINE B4 3 136 -29 6 1151 378 143 0 0 chr12 74272451 74272514 -46985016 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 6 1151 351 0 0 0 chr12 74273293 74273332 -46984198 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1151 942 58 0 0 chr12 74273332 74273453 -46984077 - B1_Mm SINE Alu 0 147 27 6 1151 406 286 124 23 chr12 74273605 74273734 -46983796 - B1F2 SINE Alu -5 144 3 6 1151 705 301 19 37 chr12 74273763 74273977 -46983553 - B4A SINE B4 0 292 83 6 1151 629 269 21 0 chr12 74273971 74274112 -46983418 - B4A SINE B4 -146 146 3 6 1151 1324 101 21 0 chr12 74274338 74274526 -46983004 + B2_Mm2 SINE B2 1 192 -3 6 1151 219 108 0 0 chr12 74274560 74274577 -46982953 + (A)n Simple_repeat Simple_repeat 1 17 0 6 1151 1640 42 0 0 chr12 74274577 74274770 -46982760 + B2_Mm1t SINE B2 1 193 0 6 1151 219 108 0 0 chr12 74274770 74274789 -46982741 + (A)n Simple_repeat Simple_repeat 1 19 0 6 1151 330 308 98 0 chr12 74274789 74274922 -46982608 + Tigger13a DNA MER2_type 122 267 -504 6 1151 1193 195 48 20 chr12 74275055 74275347 -46982183 - ORR1D1 LTR MaLR -38 332 1 6 1151 210 91 0 57 chr12 74275355 74275390 -46982140 + (GGAGA)n Simple_repeat Simple_repeat 1 33 0 6 1151 1632 212 15 85 chr12 74275489 74275679 -46981851 - ORR1D2 LTR MaLR 0 370 208 6 1151 1250 41 0 0 chr12 74275679 74275825 -46981705 - B1_Mus2 SINE Alu 0 147 2 6 1151 1632 212 15 85 chr12 74275825 74276032 -46981498 - ORR1D2 LTR MaLR -163 207 1 6 1151 430 181 134 11 chr12 74276034 74276242 -46981288 + L1M2 LINE L1 5260 5498 -802 6 1151 982 209 21 0 chr12 74276348 74276539 -46980991 + B3 SINE B2 3 197 -19 6 1151 996 140 0 7 chr12 74276541 74276692 -46980838 - B1_Mur4 SINE Alu 0 150 1 6 1151 743 289 52 0 chr12 74277025 74277219 -46980311 + B4 SINE B4 27 230 -62 6 1151 899 169 0 0 chr12 74277220 74277356 -46980174 + B1_Mur4 SINE Alu 3 138 -12 6 1151 182 320 67 0 chr12 74277833 74277908 -46979622 - MIR SINE MIR -113 149 70 6 1151 322 276 85 9 chr12 74278052 74278158 -46979372 + PB1D7 SINE Alu 6 119 -1 6 1151 731 263 6 6 chr12 74279570 74279727 -46977803 + RSINE1 SINE B4 2 158 -7 6 1151 310 42 42 0 chr12 74279732 74279780 -46977750 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1151 210 282 112 64 chr12 74279906 74280031 -46977499 - B3 SINE B2 0 216 86 6 1151 2129 312 149 10 chr12 74280485 74281495 -46976035 - Lx8 LINE L1 -158 7315 6165 6 1151 306 0 0 0 chr12 74281511 74281545 -46975985 + (TGG)n Simple_repeat Simple_repeat 3 36 0 6 1151 465 84 0 0 chr12 74281543 74281614 -46975916 + (GGA)n Simple_repeat Simple_repeat 1 71 0 6 1151 325 335 123 20 chr12 74281617 74281910 -46975620 - Lx8 LINE L1 -1319 6154 5832 6 1151 31 0 0 0 chr12 74283025 74283056 -46974474 + AT_rich Low_complexity Low_complexity 1 31 0 6 1151 379 274 39 52 chr12 74283076 74283230 -46974300 - RSINE1 SINE B4 -4 161 10 6 1151 739 127 59 0 chr12 74283304 74283422 -46974108 + B1_Mur2 SINE Alu 5 129 -20 6 1151 349 263 0 14 chr12 74283915 74284054 -46973476 + CT-rich Low_complexity Low_complexity 2 138 0 6 1151 282 241 253 0 chr12 74284729 74284812 -46972718 + RSINE1 SINE B4 5 108 -57 6 1151 22 35 0 0 chr12 74286033 74286062 -46971468 + AT_rich Low_complexity Low_complexity 1 29 0 6 1151 279 0 0 0 chr12 74286489 74286520 -46971010 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1151 248 273 182 0 chr12 74286534 74286611 -46970919 - B3A SINE B2 -106 92 2 6 1151 533 285 6 5 chr12 74286732 74286896 -46970634 - B3A SINE B2 -6 210 46 6 1151 293 183 0 48 chr12 74286957 74287020 -46970510 - B3A SINE B2 -137 61 2 6 1151 206 180 20 20 chr12 74287037 74287063 -46970467 + (TATATG)n Simple_repeat Simple_repeat 2 27 0 6 1151 267 31 0 0 chr12 74287063 74287095 -46970435 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1151 206 180 20 20 chr12 74287095 74287119 -46970411 + (TATATG)n Simple_repeat Simple_repeat 1 25 0 6 1151 276 195 112 38 chr12 74287133 74287213 -46970317 - B4 SINE B4 -205 87 2 7 1151 429 154 51 0 chr12 74287587 74287665 -46969865 - B1F SINE Alu -1 148 67 7 1151 426 225 11 11 chr12 74287665 74287677 -46969853 - ID_B1 SINE B4 -2 222 133 7 1151 630 0 0 0 chr12 74287796 74287866 -46969664 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1151 273 306 0 14 chr12 74288155 74288228 -46969302 - ID4_ SINE ID -4 79 8 7 1151 21 36 0 0 chr12 74288629 74288657 -46968873 + AT_rich Low_complexity Low_complexity 1 28 0 7 1151 299 235 0 68 chr12 74289477 74289550 -46967980 - ID4 SINE ID -7 76 9 7 1151 1177 81 10 89 chr12 74289783 74289986 -46967544 + B2_Mm2 SINE B2 1 187 -8 7 1151 361 276 207 7 chr12 74290105 74290240 -46967290 - RSINE1 SINE B4 0 165 4 7 1151 195 359 45 22 chr12 74290413 74290547 -46966983 + MIRb SINE MIR 130 266 -2 7 1151 198 331 199 0 chr12 74290622 74290758 -46966772 + MIR SINE MIR 29 191 -71 7 1151 23 101 0 0 chr12 74290835 74290914 -46966616 + AT_rich Low_complexity Low_complexity 1 79 0 7 1151 942 290 57 8 chr12 74291433 74291680 -46965850 + B4 SINE B4 6 264 -28 7 1151 3043 117 60 12 chr12 74291701 74292205 -46965325 - RLTR11A LTR ERVK 0 528 1 7 1151 2714 33 0 12 chr12 74292386 74292728 -46964802 + MTA_Mm LTR MaLR 1 338 -8 7 1151 8399 61 5 7 chr12 74292736 74293833 -46963697 + MTA_Mm-int LTR MaLR 3 1096 -2 7 1151 3356 35 2 0 chr12 74293835 74294230 -46963300 + MTA_Mm LTR MaLR 1 396 0 7 1151 459 281 0 0 chr12 74294230 74294326 -46963204 + ID_B1 SINE B4 122 217 -7 7 1151 343 277 31 41 chr12 74294238 74294336 -46963194 + B1F SINE Alu 53 149 0 7 1151 1391 46 0 11 chr12 74295122 74295137 -46962393 - B2_Mm1a SINE B2 -19 174 162 7 1151 386 50 33 0 chr12 74295137 74295197 -46962333 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 7 1151 1391 46 0 11 chr12 74295197 74295357 -46962173 - B2_Mm1a SINE B2 -32 161 2 7 1151 315 333 89 0 chr12 74295718 74295841 -46961689 - ID_B1 SINE B4 -7 217 84 7 1151 352 311 110 28 chr12 74296183 74296365 -46961165 - Lx8 LINE L1 -418 7055 6859 7 1151 198 143 0 0 chr12 74296874 74296909 -46960621 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 7 1151 319 331 0 41 chr12 74297019 74297142 -46960388 - RSINE1 SINE B4 -18 147 30 7 1151 339 275 107 58 chr12 74297600 74297805 -46959725 - L1M5 LINE L1 -777 5567 5353 7 1151 183 129 0 0 chr12 74297869 74297900 -46959630 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 1151 250 304 120 9 chr12 74297945 74298161 -46959369 - L1MA5A LINE L1 -80 6220 5981 7 1151 981 295 101 15 chr12 74298179 74298745 -46958785 - L1MA5A LINE L1 -428 5872 5258 7 1151 799 186 7 0 chr12 74298851 74298996 -46958534 - B1_Mus2 SINE Alu 0 147 2 7 1151 1260 88 53 0 chr12 74299054 74299225 -46958305 - B2_Mm2 SINE B2 -14 181 2 7 1151 831 268 142 12 chr12 74299227 74299643 -46957887 - L1MA5A LINE L1 -3110 3033 2564 7 1151 200 31 62 0 chr12 74302616 74302648 -46954882 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1151 22 35 0 0 chr12 74303104 74303133 -46954397 + AT_rich Low_complexity Low_complexity 1 29 0 7 1151 181 54 79 26 chr12 74303747 74303785 -46953745 + A-rich Low_complexity Low_complexity 2 41 0 7 1151 248 347 87 24 chr12 74304757 74304884 -46952646 - B1F SINE Alu -14 135 1 7 1151 852 111 0 0 chr12 74305189 74305342 -46952188 + (TC)n Simple_repeat Simple_repeat 2 154 0 7 1151 678 215 29 47 chr12 74305346 74305517 -46952013 - B4A SINE B4 -12 280 113 7 1151 234 0 0 0 chr12 74305873 74305899 -46951631 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1151 21 36 0 0 chr12 74306063 74306091 -46951439 + AT_rich Low_complexity Low_complexity 1 28 0 7 1151 487 200 52 7 chr12 74306091 74306227 -46951303 - Lx9 LINE L1 0 7644 7503 7 1151 24 32 0 0 chr12 74306540 74306571 -46950959 + AT_rich Low_complexity Low_complexity 1 31 0 7 1151 613 277 45 36 chr12 74309210 74309285 -46948245 + ID_B1 SINE B4 2 223 0 7 1151 857 107 23 6 chr12 74309285 74309430 -46948100 + B1_Mus1 SINE Alu 7 148 0 7 1151 255 382 0 13 chr12 74309439 74309516 -46948014 + B3 SINE B2 95 170 -46 7 1151 773 168 0 51 chr12 74309531 74309669 -46947861 + B1_Mur4 SINE Alu 2 132 -18 7 1151 249 350 60 47 chr12 74311343 74311493 -46946037 - MIRm SINE MIR -105 171 20 7 1151 249 83 0 0 chr12 74311985 74312021 -46945509 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1151 1174 48 14 0 chr12 74312021 74312166 -46945364 - B1_Mus1 SINE Alu 0 148 2 7 1151 223 203 16 48 chr12 74312357 74312419 -46945111 - B3A SINE B2 -138 60 1 7 1151 230 178 105 26 chr12 74312677 74312754 -46944776 - L1ME3 LINE L1 0 6179 6091 7 1151 610 146 208 16 chr12 74312772 74312897 -46944633 - B1_Mur2 SINE Alu 0 149 1 7 1151 369 62 0 0 chr12 74312983 74313031 -46944499 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1151 315 0 0 0 chr12 74313031 74313066 -46944464 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1151 6565 82 37 3 chr12 74313720 74314690 -46942840 - L1VL2 LINE L1 -627 2988 1986 7 1151 6259 84 72 12 chr12 74314672 74315951 -46941579 - L1VL2 LINE L1 -2181 1434 72 7 1151 1078 84 21 0 chr12 74316105 74316248 -46941282 + B1_Mus2 SINE Alu 2 147 0 7 1151 212 167 0 0 chr12 74316253 74316295 -46941235 + A-rich Low_complexity Low_complexity 1 42 0 7 1151 369 220 78 45 chr12 74316417 74316557 -46940973 - L1MB7 LINE L1 -310 5873 5729 7 1151 838 226 14 67 chr12 74316560 74316769 -46940761 + B3A SINE B2 1 198 0 7 1151 548 171 112 37 chr12 74316819 74316953 -46940577 + B1_Mur4 SINE Alu 4 147 -3 7 1151 342 67 0 0 chr12 74316961 74317006 -46940524 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1151 268 179 15 0 chr12 74317007 74317074 -46940456 + (CAGA)n Simple_repeat Simple_repeat 1 68 0 7 1151 1004 254 84 7 chr12 74317078 74317483 -46940047 - L1_Mur3 LINE L1 -1394 4486 4051 7 1152 540 286 80 178 chr12 74317827 74318413 -46939117 - MT2A LTR ERVL 0 533 5 7 1152 212 194 0 0 chr12 74318784 74318820 -46938710 + (TATG)n Simple_repeat Simple_repeat 3 38 0 7 1152 478 333 19 12 chr12 74318820 74318981 -46938549 - RSINE1 SINE B4 0 165 4 7 1152 348 199 3 0 chr12 74319278 74319354 -46938176 - B2_Mm2 SINE B2 -9 184 107 7 1152 22 0 0 0 chr12 74319711 74319733 -46937797 + AT_rich Low_complexity Low_complexity 1 22 0 7 1152 748 231 39 53 chr12 74319736 74319942 -46937588 - B3A SINE B2 -6 210 8 7 1152 2156 110 58 3 chr12 74320940 74321268 -46936262 - ORR1A1 LTR MaLR 0 346 1 7 1152 521 262 43 26 chr12 74321500 74321734 -46935796 - B4 SINE B4 -4 288 15 7 1152 284 200 250 0 chr12 74322080 74322160 -46935370 - RSINE1 SINE B4 -21 144 45 7 1152 498 361 21 45 chr12 74322313 74322600 -46934930 + B4A SINE B4 11 290 -2 7 1152 344 22 22 0 chr12 74322611 74322656 -46934874 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1152 446 281 176 22 chr12 74322798 74322980 -46934550 + B3 SINE B2 2 211 -5 7 1152 362 286 51 70 chr12 74323036 74323194 -46934336 + MER3 DNA MER1_type 11 165 -44 7 1152 1034 282 91 87 chr12 74323379 74324139 -46933391 - L1MB2 LINE L1 -63 6108 5346 7 1152 300 120 0 0 chr12 74324831 74324881 -46932649 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 1152 296 340 0 0 chr12 74325514 74325608 -46931922 - L2a LINE L2 -6 3420 3327 7 1152 732 327 91 89 chr12 74325668 74326131 -46931399 - MLT2B3 LTR ERVL -4 550 87 7 1152 396 299 9 0 chr12 74326367 74326474 -46931056 - PB1D10 SINE Alu -9 108 1 7 1152 348 318 0 9 chr12 74326379 74326487 -46931043 - ID_B1 SINE B4 -48 176 70 7 1152 230 0 33 0 chr12 74326641 74326671 -46930859 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 7 1152 1156 62 0 0 chr12 74326671 74326817 -46930713 - B1_Mm SINE Alu 0 147 2 7 1152 668 286 28 9 chr12 74326975 74327190 -46930340 - ID_B1 SINE B4 -3 221 3 7 1152 444 306 71 40 chr12 74327620 74327872 -46929658 - Looper DNA PiggyBac -106 1452 1193 7 1152 261 0 0 0 chr12 74327872 74327901 -46929629 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1152 484 312 85 25 chr12 74327930 74328213 -46929317 - Looper DNA PiggyBac -308 1250 951 7 1152 364 189 27 0 chr12 74328307 74328381 -46929149 + B4A SINE B4 149 224 -68 7 1152 23 0 0 0 chr12 74328620 74328643 -46928887 + AT_rich Low_complexity Low_complexity 1 23 0 7 1152 257 51 26 0 chr12 74328969 74329008 -46928522 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 7 1152 801 270 99 42 chr12 74329444 74329846 -46927684 - Looper DNA PiggyBac -987 571 147 7 1152 212 175 0 0 chr12 74329861 74329901 -46927629 + (CATAA)n Simple_repeat Simple_repeat 5 44 0 7 1152 827 276 56 79 chr12 74330172 74330730 -46926800 - L1ME1 LINE L1 -345 5834 5290 7 1152 381 300 32 39 chr12 74330748 74331029 -46926501 - L1ME1 LINE L1 -906 5240 4962 7 1152 219 69 0 0 chr12 74331120 74331149 -46926381 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1152 242 279 91 61 chr12 74331354 74331453 -46926077 + PB1D7 SINE Alu 6 107 -13 7 1152 984 280 153 54 chr12 74331501 74331904 -46925626 - L1MC3 LINE L1 -56 7729 7301 7 1152 261 0 0 0 chr12 74331904 74331933 -46925597 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1152 675 178 0 17 chr12 74331940 74332060 -46925470 + PB1D9 SINE Alu 3 120 0 7 1152 984 280 153 54 chr12 74332060 74332241 -46925289 - L1MC3 LINE L1 -485 7300 7078 7 1152 656 271 105 3 chr12 74332257 74332507 -46925023 - B4A SINE B4 0 292 6 7 1152 1346 68 0 55 chr12 74334657 74334792 -46922738 + L1_Mus2 LINE L1 6377 6503 -63 7 1152 3428 28 2 0 chr12 74334792 74335187 -46922343 + MTA_Mm LTR MaLR 1 396 0 7 1152 1346 68 0 55 chr12 74335187 74335252 -46922278 + L1_Mus2 LINE L1 6504 6566 0 7 1152 1057 78 35 0 chr12 74335339 74335481 -46922049 + B1_Mus1 SINE Alu 2 148 0 7 1152 312 274 36 0 chr12 74335835 74335927 -46921603 + Charlie4z DNA MER1_type 74 149 -18 7 1152 231 328 60 0 chr12 74335982 74336098 -46921432 - MER5A DNA MER1_type -50 139 17 7 1152 35 0 0 0 chr12 74336367 74336402 -46921128 + AT_rich Low_complexity Low_complexity 1 35 0 7 1152 235 373 51 47 chr12 74336468 74336704 -46920826 - B4A SINE B4 -15 277 41 8 1152 476 290 50 25 chr12 74336913 74336948 -46920582 - B4A SINE B4 -40 252 218 8 1152 234 0 0 0 chr12 74336948 74336974 -46920556 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1152 660 151 101 0 chr12 74336974 74337093 -46920437 - B1_Mur4 SINE Alu -10 140 10 8 1152 244 279 12 12 chr12 74338080 74338160 -46919370 - L1MA4 LINE L1 -373 5927 5848 8 1152 991 137 11 0 chr12 74338180 74338355 -46919175 + (TTC)n Simple_repeat Simple_repeat 1 177 0 8 1152 789 60 0 43 chr12 74338357 74338496 -46919034 + (TCC)n Simple_repeat Simple_repeat 3 135 0 8 1152 557 262 153 37 chr12 74338505 74338695 -46918835 + B3 SINE B2 5 216 0 8 1152 829 132 85 0 chr12 74338715 74338844 -46918686 + B1_Mus1 SINE Alu 2 141 -7 8 1152 700 132 12 12 chr12 74338849 74339010 -46918520 + (TAGA)n Simple_repeat Simple_repeat 2 162 0 8 1152 4879 66 23 0 chr12 74339568 74340208 -46917322 - L1_Mus1 LINE L1 0 6567 5913 8 1152 1483 33 0 0 chr12 74340208 74340389 -46917141 + L1_Mus1 LINE L1 5731 5911 -656 8 1152 1833 115 157 15 chr12 74340494 74340837 -46916693 - ORR1B1 LTR MaLR -2 392 1 8 1152 301 267 130 65 chr12 74341115 74341223 -46916307 - PB1 SINE Alu -7 120 6 8 1152 297 0 0 0 chr12 74341650 74341683 -46915847 + (TTA)n Simple_repeat Simple_repeat 1 33 0 8 1152 924 122 43 37 chr12 74341877 74342039 -46915491 - URR1B DNA MER1_type -58 167 5 8 1152 331 337 0 0 chr12 74342044 74342127 -46915403 - RSINE1 SINE B4 -78 87 5 8 1152 24 32 0 0 chr12 74342799 74342830 -46914700 + AT_rich Low_complexity Low_complexity 1 31 0 8 1152 228 200 0 0 chr12 74343303 74343353 -46914177 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1152 735 191 7 7 chr12 74344221 74344363 -46913167 - B1_Mur1 SINE Alu -1 148 7 8 1152 289 215 25 116 chr12 74344255 74344376 -46913154 - MT2B LTR ERVL -337 264 155 8 1152 551 279 8 0 chr12 74344703 74344825 -46912705 - B1F2 SINE Alu -1 148 26 8 1152 361 262 0 0 chr12 74344831 74344915 -46912615 + ORR1D2 LTR MaLR 287 370 0 8 1152 462 18 0 0 chr12 74344932 74344987 -46912543 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1152 1262 28 0 0 chr12 74345664 74345809 -46911721 - B1_Mus2 SINE Alu 0 147 3 8 1152 332 246 209 37 chr12 74345859 74346084 -46911446 + B4 SINE B4 2 280 -12 8 1152 1037 209 5 29 chr12 74346201 74346408 -46911122 + B3 SINE B2 1 202 -14 8 1152 421 304 29 75 chr12 74348173 74348428 -46909102 + ORR1C2 LTR MaLR 1 195 -189 8 1152 369 0 0 0 chr12 74348539 74348580 -46908950 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 8 1152 660 224 105 0 chr12 74348958 74349101 -46908429 + B3 SINE B2 11 168 -48 8 1152 2600 62 0 3 chr12 74349122 74349463 -46908067 - L1Md_F2 LINE L1 0 6582 6243 8 1152 264 297 61 52 chr12 74349677 74349890 -46907640 - L1M4 LINE L1 -346 5832 5618 8 1152 226 236 186 17 chr12 74349928 74349964 -46907566 - L1MB4 LINE L1 -3223 3518 3481 8 1152 985 160 0 0 chr12 74349964 74350108 -46907422 - B1_Mur4 SINE Alu -5 145 2 8 1152 226 236 186 17 chr12 74350108 74350248 -46907282 - L1MB4 LINE L1 -3261 3480 3312 8 1152 236 156 62 38 chr12 74350502 74350582 -46906948 - L1MB4 LINE L1 -6520 87 6 8 1152 653 323 0 6 chr12 74350814 74350973 -46906557 - RSINE1 SINE B4 -2 163 6 8 1152 192 316 89 122 chr12 74350990 74351170 -46906360 + MIRc SINE MIR 56 229 -39 8 1152 198 118 0 0 chr12 74352025 74352059 -46905471 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 1152 345 257 70 17 chr12 74352240 74352260 -46905270 - B4 SINE B4 -169 123 102 8 1152 670 221 30 0 chr12 74352260 74352391 -46905139 - B1_Mur1 SINE Alu -13 136 2 8 1152 345 257 70 17 chr12 74352391 74352485 -46905045 - B4 SINE B4 -191 101 4 8 1152 330 313 33 33 chr12 74352593 74352745 -46904785 - RSINE1 SINE B4 -12 153 2 8 1152 342 261 21 150 chr12 74353645 74353785 -46903745 - ID_B1 SINE B4 -4 220 99 8 1152 9240 203 45 59 chr12 74353931 74355760 -46901770 - L1_Rod LINE L1 -1837 4010 2171 8 1152 445 66 0 0 chr12 74355760 74355821 -46901709 - B1_Mus1 SINE Alu -87 61 1 8 1152 9240 203 45 59 chr12 74355821 74357238 -46900292 - L1_Rod LINE L1 -1837 2170 744 8 1152 305 0 50 0 chr12 74357815 74357855 -46899675 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 8 1152 620 99 0 0 chr12 74357855 74357946 -46899584 - B1_Mur3 SINE Alu -58 91 1 8 1152 2028 143 74 0 chr12 74357946 74358281 -46899249 - RMER19B LTR ERVK -40 862 503 8 1152 7204 34 1 0 chr12 74358287 74359181 -46898349 - L1Md_T LINE L1 0 6582 5688 8 1152 1994 186 100 45 chr12 74359181 74359500 -46898030 - RMER19B LTR ERVK -384 518 184 8 1152 1120 90 0 0 chr12 74359500 74359645 -46897885 + B1_Mus1 SINE Alu 2 146 -2 8 1152 1994 186 100 45 chr12 74359645 74359816 -46897714 - RMER19B LTR ERVK -719 183 1 8 1152 1373 193 120 12 chr12 74359816 74360141 -46897389 - MTD LTR MaLR -59 360 1 8 1152 507 224 161 68 chr12 74361261 74361616 -46895914 - Lx8 LINE L1 -5 7468 7081 8 1152 15377 157 28 13 chr12 74361613 74362959 -46894571 - L1VL2 LINE L1 -1538 4345 3010 8 1152 1561 31 0 59 chr12 74362959 74363163 -46894367 - B2_Mm1t SINE B2 0 193 2 8 1152 15377 157 28 13 chr12 74363163 74364449 -46893081 - L1VL2 LINE L1 -2874 3009 1671 8 1152 402 21 0 0 chr12 74364449 74364496 -46893034 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 8 1152 15377 117 68 19 chr12 74364496 74365547 -46891983 - L1VL2 LINE L1 -4213 1670 570 8 1152 189 0 0 0 chr12 74365707 74365728 -46891802 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1152 436 263 256 0 chr12 74366079 74366212 -46891318 + B3A SINE B2 1 167 -31 8 1152 505 237 53 0 chr12 74366732 74366846 -46890684 + B1F1 SINE Alu 2 121 -28 8 1152 365 275 19 110 chr12 74367033 74367188 -46890342 + Tigger7 DNA MER2_type 953 1093 -1398 8 1152 1055 50 50 0 chr12 74367335 74367474 -46890056 - B1_Mus1 SINE Alu -1 147 2 8 1152 1130 247 116 21 chr12 74367653 74367988 -46889542 - ORR1D2 LTR MaLR 0 370 4 8 1152 805 275 70 53 chr12 74368747 74369031 -46888499 - B4 SINE B4 -2 290 2 8 1152 257 222 37 0 chr12 74369080 74369134 -46888396 - ID4_ SINE ID -6 77 22 8 1152 381 255 63 9 chr12 74369265 74369376 -46888154 + PB1 SINE Alu 11 127 0 8 1152 22 0 0 0 chr12 74370067 74370089 -46887441 + AT_rich Low_complexity Low_complexity 1 22 0 8 1152 825 139 39 0 chr12 74371544 74371673 -46885857 - B1_Mus2 SINE Alu -12 135 2 8 1152 1150 51 0 0 chr12 74372883 74373021 -46884509 + B1_Mus1 SINE Alu 5 142 -6 8 1152 212 0 0 35 chr12 74373024 74373053 -46884477 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1152 182 313 141 39 chr12 74374612 74374768 -46882762 - MIRm SINE MIR -63 213 42 8 1152 206 253 146 106 chr12 74375181 74375380 -46882150 - MIRb SINE MIR -34 234 28 8 1152 400 272 48 0 chr12 74376129 74376254 -46881276 - Cheshire DNA MER1_type -28 2392 2262 8 1152 287 229 0 79 chr12 74376312 74376353 -46881177 - Cheshire DNA MER1_type -371 2049 2010 8 1152 578 244 171 70 chr12 74376353 74376697 -46880833 + MTE2a LTR MaLR 1 379 0 8 1152 287 229 0 79 chr12 74376697 74376731 -46880799 - Cheshire DNA MER1_type -411 2009 1980 8 1152 280 250 83 0 chr12 74376826 74376910 -46880620 - Lx8 LINE L1 -167 7306 7216 8 1152 2099 257 114 33 chr12 74376935 74377752 -46879778 - Lx8 LINE L1 -360 7113 6231 8 1152 269 255 152 67 chr12 74377794 74377958 -46879572 - Cheshire DNA MER1_type -517 1903 1726 8 1152 24 32 0 0 chr12 74378342 74378373 -46879157 + AT_rich Low_complexity Low_complexity 1 31 0 8 1152 8884 80 42 9 chr12 74378484 74380635 -46876895 - L1VL2 LINE L1 -1297 2318 95 8 1152 513 282 74 0 chr12 74381040 74381189 -46876341 - RSINE1 SINE B4 -2 163 4 8 1152 347 237 89 18 chr12 74381223 74381333 -46876197 + PB1D10 SINE Alu 2 117 0 8 1152 396 0 0 0 chr12 74381888 74381932 -46875598 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1152 21 36 0 0 chr12 74384636 74384664 -46872866 + AT_rich Low_complexity Low_complexity 1 28 0 8 1152 405 0 0 0 chr12 74385318 74385363 -46872167 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 1152 195 42 0 0 chr12 74385368 74385392 -46872138 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1152 756 231 92 6 chr12 74386790 74386871 -46870659 + ID_B1 SINE B4 2 97 -127 8 1152 356 212 115 48 chr12 74386871 74386967 -46870563 + B1F SINE Alu 4 107 -42 8 1152 285 51 0 0 chr12 74386967 74387006 -46870524 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1152 317 294 306 0 chr12 74387030 74387190 -46870340 + ID_B1 SINE B4 4 212 -12 8 1152 797 267 133 18 chr12 74388941 74389271 -46868259 - MTD LTR MaLR -14 405 6 8 1152 286 264 11 84 chr12 74390668 74390763 -46866767 + PB1D10 SINE Alu 29 116 -1 8 1152 3784 14 121 0 chr12 74391122 74391562 -46865968 - MT2_Mm LTR ERVL 0 493 1 8 1152 798 180 279 91 chr12 74391789 74392109 -46865421 - ORR1C2 LTR MaLR 0 384 5 8 1152 667 187 65 0 chr12 74393475 74393614 -46863916 - B1_Mur4 SINE Alu 0 150 3 8 1152 189 0 0 0 chr12 74393782 74393803 -46863727 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 8 1152 1135 71 0 0 chr12 74393806 74393947 -46863583 - B1_Mus1 SINE Alu -6 142 2 8 1152 182 360 12 0 chr12 74395104 74395190 -46862340 + MIRb SINE MIR 123 209 -59 8 1152 217 301 134 83 chr12 74395334 74395624 -46861906 + L2 LINE L2 58 362 -3057 8 1152 852 217 86 10 chr12 74395636 74395845 -46861685 - ORR1D1 LTR MaLR -144 230 6 8 1152 582 206 99 43 chr12 74395881 74396043 -46861487 - B2_Mm2 SINE B2 -20 175 5 8 1152 513 248 9 0 chr12 74396039 74396152 -46861378 - B1_Mur1 SINE Alu -35 114 1 8 1152 1025 259 88 29 chr12 74396774 74397224 -46860306 + L1MC1 LINE L1 5377 5888 -445 8 1152 708 294 130 50 chr12 74397305 74398263 -46859267 + L1MC1 LINE L1 5693 6327 -6 8 1152 1479 183 53 3 chr12 74398327 74398617 -46858913 + Lx9 LINE L1 7288 7593 -51 8 1152 3329 21 26 0 chr12 74398617 74399003 -46858527 - MTA_Mm LTR MaLR 0 396 1 8 1152 1479 183 53 3 chr12 74399003 74399051 -46858479 + Lx9 LINE L1 7594 7642 -2 8 1152 257 183 17 0 chr12 74399190 74399250 -46858280 + GA-rich Low_complexity Low_complexity 5 65 0 8 1152 227 246 89 16 chr12 74399383 74399507 -46858023 + HAL1 LINE L1 1169 1301 -1206 8 1152 269 235 98 39 chr12 74399966 74400068 -46857462 + HAL1 LINE L1 1555 1662 -845 8 1152 818 233 79 36 chr12 74401051 74401331 -46856199 - B4A SINE B4 0 292 1 9 1152 781 176 30 46 chr12 74401402 74401605 -46855925 - B3 SINE B2 -1 194 1 9 1152 379 141 0 171 chr12 74401844 74401955 -46855575 - MT2B LTR ERVL -343 258 167 9 1152 662 35 0 0 chr12 74401871 74401957 -46855573 - B1_Mus2 SINE Alu -61 86 1 9 1152 569 282 21 58 chr12 74401964 74402152 -46855378 + MER20 DNA MER1_type 4 184 -35 9 1152 913 200 84 5 chr12 74402495 74402686 -46854844 + B3 SINE B2 5 210 -6 9 1152 795 199 0 14 chr12 74402693 74402841 -46854689 - B1_Mur2 SINE Alu -2 147 2 9 1152 896 151 167 30 chr12 74403171 74403214 -46854316 - URR1B DNA MER1_type 0 225 188 9 1152 3000 93 5 10 chr12 74403214 74403616 -46853914 - MTB LTR MaLR 0 400 1 9 1152 896 151 167 30 chr12 74403616 74403770 -46853760 - URR1B DNA MER1_type -38 187 1 9 1152 294 29 0 0 chr12 74404782 74404817 -46852713 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1152 504 244 8 54 chr12 74404940 74405070 -46852460 - PB1 SINE Alu -2 125 2 9 1152 4450 127 7 56 chr12 74406632 74406751 -46850779 + L1_Mus3 LINE L1 5192 5306 -580 9 1152 1173 82 0 0 chr12 74406751 74406897 -46850633 + B1_Mm SINE Alu 2 147 0 9 1152 8031 86 8 34 chr12 74406897 74407654 -46849876 + L1_Mus3 LINE L1 5288 6024 -614 9 1152 1591 27 33 0 chr12 74407654 74407838 -46849692 + B2_Mm1t SINE B2 1 190 -3 9 1152 8031 65 11 18 chr12 74407838 74408440 -46849090 + L1_Mus3 LINE L1 6025 6626 -12 9 1152 1173 75 11 6 chr12 74408441 74408616 -46848914 + (GAA)n Simple_repeat Simple_repeat 3 178 0 9 1152 507 222 43 0 chr12 74410734 74410851 -46846679 - B3 SINE B2 -13 203 82 9 1152 3063 27 0 39 chr12 74411979 74412361 -46845169 - IAPLTR1_Mm LTR ERVK 0 367 1 9 1152 26791 17 1 0 chr12 74412361 74415315 -46842215 - IAPEz-int LTR ERVK 0 6481 3525 9 1152 895 89 32 0 chr12 74415315 74415439 -46842091 - IAPEz-int LTR ERVK -2770 4910 4783 9 1152 1793 123 4 15 chr12 74415434 74415699 -46841831 - IAPEz-int LTR ERVK -5183 2497 2236 9 1152 454 66 0 32 chr12 74415688 74415751 -46841779 - IAPEz-int LTR ERVK -5062 1419 1359 9 1152 3487 73 36 13 chr12 74415751 74416465 -46841065 - IAPEz-int LTR ERVK -5819 662 8 9 1152 3063 27 0 39 chr12 74416465 74416847 -46840683 - IAPLTR1_Mm LTR ERVK 0 367 1 9 1152 309 267 11 43 chr12 74417220 74417314 -46840216 + B4A SINE B4 50 140 -152 9 1152 2109 147 48 5 chr12 74418205 74418601 -46838929 - MTC LTR MaLR -8 413 1 9 1152 333 0 0 0 chr12 74418995 74419032 -46838498 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 9 1152 611 188 122 43 chr12 74419032 74419160 -46838370 - B1_Mur4 SINE Alu -9 141 1 9 1152 273 253 192 58 chr12 74419183 74419355 -46838175 + MER102c DNA MER1_type 96 290 -41 9 1152 1304 186 5 0 chr12 74419582 74419802 -46837728 + URR1B DNA MER1_type 5 225 0 9 1152 3803 138 134 60 chr12 74421310 74422138 -46835392 + RMER19B LTR ERVK 2 890 -12 9 1152 964 228 11 5 chr12 74422287 74422477 -46835053 + B3 SINE B2 2 192 -24 9 1152 609 260 67 18 chr12 74422513 74422736 -46834794 + B4A SINE B4 1 234 -58 9 1152 305 274 130 31 chr12 74422980 74423142 -46834388 - MLT1A LTR MaLR -7 367 190 9 1152 759 22 0 0 chr12 74423808 74423897 -46833633 + (TCTCCC)n Simple_repeat Simple_repeat 2 90 0 9 1152 258 350 10 0 chr12 74424115 74424215 -46833315 - PB1D10 SINE Alu -5 112 12 9 1152 513 279 167 105 chr12 74424247 74424600 -46832930 - MTE2b LTR MaLR -4 375 1 9 1152 423 0 0 0 chr12 74426251 74426298 -46831232 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1152 220 240 39 39 chr12 74426361 74426439 -46831091 - PB1D10 SINE Alu -36 81 4 9 1152 207 0 0 0 chr12 74429464 74429487 -46828043 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1152 183 42 0 0 chr12 74429825 74429849 -46827681 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1152 342 0 0 0 chr12 74429998 74430036 -46827494 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1152 302 247 52 0 chr12 74430036 74430113 -46827417 - B3A SINE B2 -57 141 61 9 1152 1179 50 0 0 chr12 74430508 74430649 -46826881 - B1_Mus2 SINE Alu -6 141 1 9 1152 270 298 32 11 chr12 74432387 74432482 -46825048 + BC1_Mm scRNA scRNA 2 98 -54 9 1152 820 152 195 17 chr12 74432493 74432667 -46824863 + B3 SINE B2 3 207 -9 9 1152 284 70 23 0 chr12 74434909 74434952 -46822578 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1152 284 218 81 0 chr12 74434978 74435065 -46822465 - L1MB1 LINE L1 -4 6185 6092 9 1152 775 197 7 0 chr12 74435788 74435935 -46821595 - B1_Mus1 SINE Alu 0 148 1 9 1152 56 0 0 0 chr12 74436370 74436426 -46821104 + AT_rich Low_complexity Low_complexity 1 56 0 9 1152 42 80 0 16 chr12 74436452 74436496 -46821034 + AT_rich Low_complexity Low_complexity 1 43 0 9 1152 190 95 23 23 chr12 74436496 74436539 -46820991 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 1152 42 80 0 16 chr12 74436539 74436621 -46820909 + AT_rich Low_complexity Low_complexity 1 82 0 9 1152 404 265 140 79 chr12 74436717 74436881 -46820649 - B4 SINE B4 -4 288 115 9 1152 219 103 0 0 chr12 74436902 74436941 -46820589 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1152 220 247 67 27 chr12 74436941 74437016 -46820514 - B4 SINE B4 -206 86 9 9 1152 271 200 12 0 chr12 74437609 74437696 -46819834 - B1F SINE Alu -3 146 23 9 1152 194 159 0 43 chr12 74437816 74437862 -46819668 + T-rich Low_complexity Low_complexity 3 46 0 9 1152 277 174 29 0 chr12 74437865 74437934 -46819596 + CT-rich Low_complexity Low_complexity 1 71 0 9 1152 22 56 0 0 chr12 74439063 74439099 -46818431 + AT_rich Low_complexity Low_complexity 1 36 0 9 1152 28 0 0 0 chr12 74439118 74439146 -46818384 + AT_rich Low_complexity Low_complexity 1 28 0 9 1152 681 209 7 39 chr12 74440154 74440308 -46817222 - B1_Mur2 SINE Alu 0 149 1 9 1152 204 94 37 19 chr12 74441314 74441368 -46816162 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 9 1152 25 0 0 0 chr12 74444157 74444182 -46813348 + AT_rich Low_complexity Low_complexity 1 25 0 9 1152 394 49 33 0 chr12 74444344 74444405 -46813125 + (TC)n Simple_repeat Simple_repeat 2 64 0 9 1152 2260 123 49 79 chr12 74444841 74444892 -46812638 - ORR1B1 LTR MaLR 0 394 349 9 1152 1509 53 16 0 chr12 74444892 74445082 -46812448 - B2_Mm1a SINE B2 0 193 1 9 1152 2260 123 49 79 chr12 74445082 74445099 -46812431 - ORR1B1 LTR MaLR -46 348 348 9 1152 1025 44 81 7 chr12 74445099 74445235 -46812295 - B1_Mus2 SINE Alu 0 147 2 9 1152 2260 123 49 79 chr12 74445235 74445571 -46811959 - ORR1B1 LTR MaLR -46 348 1 9 1152 23 0 0 0 chr12 74445883 74445906 -46811624 + AT_rich Low_complexity Low_complexity 1 23 0 9 1152 345 313 101 38 chr12 74446458 74446667 -46810863 + MIRb SINE MIR 19 240 -28 9 1152 953 239 26 70 chr12 74446779 74447063 -46810467 - B4 SINE B4 -6 286 36 9 1153 208 350 96 16 chr12 74449214 74449339 -46808191 - MIR3 SINE MIR -63 145 11 9 1153 530 290 164 28 chr12 74450102 74450315 -46807215 - MTE2a LTR MaLR 0 379 138 9 1153 408 197 102 159 chr12 74450882 74451039 -46806491 - B1F2 SINE Alu -1 148 1 9 1153 323 275 0 59 chr12 74451131 74451216 -46806314 + RSINE1 SINE B4 3 82 -83 9 1153 248 253 12 25 chr12 74452918 74452999 -46804531 + ID4 SINE ID 1 80 -3 9 1153 194 355 26 60 chr12 74453065 74453182 -46804348 - L4 LINE RTE -932 1097 985 9 1153 545 206 0 0 chr12 74453265 74453370 -46804160 + B1F SINE Alu 1 105 -15 9 1153 347 311 78 11 chr12 74453370 74453442 -46804088 + B4A SINE B4 86 274 -18 9 1153 319 208 26 65 chr12 74453749 74453826 -46803704 - PB1D7 SINE Alu -21 128 55 9 1153 1570 174 18 77 chr12 74453826 74454163 -46803367 + RLTR20A LTR ERVK 1 317 -224 9 1153 967 0 9 0 chr12 74454158 74454273 -46803257 + B1_Mm SINE Alu 32 147 0 9 1153 477 0 0 0 chr12 74454290 74454343 -46803187 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1153 1264 168 18 18 chr12 74454347 74454571 -46802959 + RLTR20A LTR ERVK 318 541 0 9 1153 271 313 32 39 chr12 74454650 74454806 -46802724 - L1MC2 LINE L1 -3 6341 6187 9 1153 1201 234 136 51 chr12 74454918 74455405 -46802125 - L1MC2 LINE L1 -535 5809 5282 9 1153 348 250 62 31 chr12 74457169 74457254 -46800276 - HAL1-2a_MD LINE L1 -574 2450 2364 9 1153 1135 94 0 11 chr12 74457254 74457436 -46800094 + (TGG)n Simple_repeat Simple_repeat 1 180 0 9 1153 348 250 62 31 chr12 74457436 74457478 -46800052 - HAL1-2a_MD LINE L1 -661 2363 2319 9 1153 683 62 0 10 chr12 74458001 74458099 -46799431 + (TG)n Simple_repeat Simple_repeat 2 98 0 9 1153 354 23 0 0 chr12 74459345 74459388 -46798142 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1153 259 344 31 0 chr12 74459463 74459559 -46797971 - B4A SINE B4 -192 100 2 9 1153 447 182 0 0 chr12 74459576 74459653 -46797877 - B1F SINE Alu -36 113 37 9 1153 1062 148 11 42 chr12 74460060 74460250 -46797280 - B2_Mm1t SINE B2 -8 185 2 9 1153 323 298 53 0 chr12 74460287 74460381 -46797149 + ORR1E LTR MaLR 11 109 -250 9 1153 357 24 0 0 chr12 74460618 74460660 -46796870 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1153 537 330 130 27 chr12 74461172 74461686 -46795844 - L1MB1 LINE L1 -85 6104 5538 9 1153 421 229 91 48 chr12 74461728 74462003 -46795527 - L1MB1 LINE L1 -831 5469 5172 9 1153 273 303 69 63 chr12 74462253 74462517 -46795013 - MLT1A1 LTR MaLR -48 360 64 9 1153 220 200 0 0 chr12 74462746 74462801 -46794729 + T-rich Low_complexity Low_complexity 1 55 0 9 1153 605 261 154 7 chr12 74462969 74463166 -46794364 - B3A SINE B2 0 216 1 9 1153 570 289 110 45 chr12 74463304 74463594 -46793936 - MLT1A0 LTR MaLR -31 334 26 9 1153 255 333 0 43 chr12 74463741 74463835 -46793695 + LTR85a LTR Gypsy? 29 118 -584 9 1153 189 0 0 0 chr12 74463908 74463929 -46793601 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1153 186 43 0 0 chr12 74465329 74465352 -46792178 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1153 703 239 35 21 chr12 74465353 74465498 -46792032 - B3 SINE B2 -10 206 60 9 1153 814 40 0 0 chr12 74465897 74465998 -46791532 + B1_Mus2 SINE Alu 47 147 0 9 1153 295 284 20 59 chr12 74466844 74466945 -46790585 - RMER12 LTR ERVK -480 842 746 9 1153 180 242 60 15 chr12 74469294 74469361 -46788169 + L2b LINE L2 3095 3164 -211 9 1153 216 0 0 0 chr12 74470492 74470516 -46787014 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1153 1181 75 0 0 chr12 74470516 74470663 -46786867 - B1_Mus2 SINE Alu 0 147 1 1 1153 273 75 0 0 chr12 74470690 74470730 -46786800 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1153 331 258 120 33 chr12 74470733 74470825 -46786705 - PB1D10 SINE Alu -17 100 1 1 1153 700 316 89 81 chr12 74470828 74471186 -46786344 + MLT1B LTR MaLR 30 390 0 1 1153 234 300 84 14 chr12 74471282 74471353 -46786177 - MTEa LTR MaLR -14 365 290 1 1153 327 223 39 47 chr12 74472853 74472980 -46784550 + L1MCc LINE L1 30 155 -6268 1 1153 4797 88 35 3 chr12 74473771 74474429 -46783101 + Lx3_Mus LINE L1 6329 7007 -2 1 1153 269 272 120 0 chr12 74474626 74474648 -46782882 - ID_B1 SINE B4 -118 106 4 1 1153 298 214 86 0 chr12 74474648 74474718 -46782812 - ID4 SINE ID -4 79 4 1 1153 595 292 176 20 chr12 74474735 74475364 -46782166 + L1MCc LINE L1 2917 3701 -3240 1 1153 355 231 91 95 chr12 74475358 74475568 -46781962 + L1MC LINE L1 3038 3246 -2900 1 1153 390 348 90 78 chr12 74475774 74475850 -46781680 - L1MCc LINE L1 -5981 442 377 1 1153 259 78 0 38 chr12 74475850 74475903 -46781627 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1153 390 348 90 78 chr12 74475903 74476247 -46781283 - L1MCc LINE L1 -6047 376 17 1 1153 197 65 0 31 chr12 74476364 74476396 -46781134 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1153 730 201 27 16 chr12 74476630 74476802 -46780728 + B3A SINE B2 28 198 -18 1 1153 473 0 0 17 chr12 74478145 74478203 -46779327 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1 1153 613 36 0 23 chr12 74478620 74478706 -46778824 + (GAA)n Simple_repeat Simple_repeat 3 86 0 1 1153 762 11 0 0 chr12 74478706 74478793 -46778737 + (GGAGA)n Simple_repeat Simple_repeat 5 91 0 1 1153 291 54 0 0 chr12 74479597 74479634 -46777896 + (TTA)n Simple_repeat Simple_repeat 1 37 0 1 1153 180 234 0 0 chr12 74480922 74480969 -46776561 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1153 273 287 18 9 chr12 74480969 74481078 -46776452 - PB1D9 SINE Alu -10 110 1 1 1153 477 267 267 0 chr12 74481286 74481458 -46776072 + ID_B1 SINE B4 1 218 -6 1 1153 574 230 135 14 chr12 74481915 74482056 -46775474 + ID_B1 SINE B4 1 158 -66 1 1153 314 273 33 33 chr12 74481998 74482089 -46775441 + B1F2 SINE Alu 21 111 -38 1 1153 189 0 0 0 chr12 74482164 74482185 -46775345 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1153 185 0 0 39 chr12 74482273 74482299 -46775231 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 1 1153 256 184 20 0 chr12 74482450 74482499 -46775031 + ID_B1 SINE B4 164 213 -11 1 1153 290 49 32 32 chr12 74483105 74483168 -46774362 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 1 1153 279 0 0 0 chr12 74483369 74483400 -46774130 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1153 249 57 0 0 chr12 74483558 74483593 -46773937 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1153 1098 248 73 42 chr12 74484783 74485137 -46772393 - MLT1B LTR MaLR -4 386 22 1 1153 315 342 9 17 chr12 74485226 74485342 -46772188 + CT-rich Low_complexity Low_complexity 4 118 0 1 1153 639 37 0 0 chr12 74485601 74485683 -46771847 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 1153 428 269 41 123 chr12 74485683 74485878 -46771652 - RMER10A LTR ERVL -246 196 18 1 1153 324 178 0 0 chr12 74486305 74486378 -46771152 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1153 582 250 46 40 chr12 74486702 74486877 -46770653 + B3 SINE B2 35 210 -6 1 1153 1449 70 11 0 chr12 74488395 74488582 -46768948 - B2_Mm1t SINE B2 -1 192 4 1 1153 1528 216 50 30 chr12 74488705 74489068 -46768462 - ORR1D2 LTR MaLR 0 370 1 1 1153 574 256 51 6 chr12 74489615 74489772 -46767758 + MLT1B LTR MaLR 1 164 -226 1 1153 338 286 351 6 chr12 74489774 74489948 -46767582 + B4A SINE B4 46 279 -13 1 1153 195 42 0 0 chr12 74489988 74490012 -46767518 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1153 314 244 11 53 chr12 74490013 74490092 -46767438 - L1MC4a LINE L1 -1203 6679 6602 1 1153 270 0 0 0 chr12 74490092 74490122 -46767408 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1153 314 244 11 53 chr12 74490122 74490137 -46767393 - L1MC4a LINE L1 -1281 6601 6589 1 1153 447 262 63 7 chr12 74490159 74490301 -46767229 + MLT1B LTR MaLR 314 463 -4 1 1153 665 265 123 57 chr12 74490323 74490655 -46766875 + ORR1E LTR MaLR 1 354 -5 1 1153 194 229 0 20 chr12 74490811 74490860 -46766670 - L2a LINE L2 -70 3356 3309 1 1153 791 255 5 77 chr12 74490945 74491167 -46766363 + RMER1A Other Other 7 337 -693 1 1153 1807 151 65 110 chr12 74491184 74491585 -46765945 + RLTR41 LTR ERV1 1 383 -63 1 1153 2182 187 11 0 chr12 74491604 74491967 -46765563 + RMER1A Other Other 366 732 -298 1 1153 457 277 10 0 chr12 74491967 74492068 -46765462 - B4A SINE B4 -190 102 1 1 1153 298 250 33 0 chr12 74492080 74492140 -46765390 - B1_Mur1 SINE Alu -9 140 79 1 1153 180 0 0 0 chr12 74492145 74492165 -46765365 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1 1153 1131 55 41 0 chr12 74492173 74492319 -46765211 - B2_Mm2 SINE B2 -42 153 2 1 1153 283 236 14 0 chr12 74492319 74492381 -46765149 - B1F2 SINE Alu -37 83 18 1 1153 510 17 0 0 chr12 74492385 74492444 -46765086 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1153 353 244 163 0 chr12 74492569 74492655 -46764875 - PB1D10 SINE Alu -3 124 25 1 1153 340 192 77 0 chr12 74492714 74492792 -46764738 - PB1D10 SINE Alu 0 117 34 1 1153 249 33 0 0 chr12 74493120 74493150 -46764380 + (TTGG)n Simple_repeat Simple_repeat 1 30 0 1 1153 1009 115 7 13 chr12 74493173 74493323 -46764207 - B1_Mur4 SINE Alu -1 149 1 1 1153 275 0 29 0 chr12 74493956 74493991 -46763539 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1153 696 54 0 0 chr12 74494287 74494380 -46763150 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1153 1931 165 52 22 chr12 74495696 74496061 -46761469 + ORR1C1 LTR MaLR 1 376 -2 1 1153 315 0 0 0 chr12 74496105 74496140 -46761390 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1 1153 246 303 19 75 chr12 74496672 74496779 -46760751 + MIRb SINE MIR 47 147 -121 1 1153 22 35 0 0 chr12 74497020 74497049 -46760481 + AT_rich Low_complexity Low_complexity 1 29 0 1 1153 381 162 0 0 chr12 74497672 74497740 -46759790 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1153 686 271 32 32 chr12 74497743 74497995 -46759535 - L1MA6 LINE L1 -27 6273 6022 1 1153 362 295 100 8 chr12 74498297 74498427 -46759103 - Lx9 LINE L1 -1655 5989 5848 1 1153 2846 276 124 38 chr12 74498658 74498772 -46758758 - Lx9 LINE L1 0 7644 7510 1 1153 327 130 0 0 chr12 74498772 74498826 -46758704 + (TATG)n Simple_repeat Simple_repeat 3 56 0 1 1153 2846 276 124 38 chr12 74498826 74499948 -46757582 - Lx9 LINE L1 -135 7509 6303 1 1153 234 0 0 0 chr12 74499950 74499976 -46757554 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1 1153 1301 27 0 0 chr12 74500000 74500147 -46757383 - B1_Mm SINE Alu 0 147 1 1 1153 22 35 0 0 chr12 74500147 74500176 -46757354 + AT_rich Low_complexity Low_complexity 1 29 0 2 1153 216 0 0 0 chr12 74500292 74500316 -46757214 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1153 914 269 24 5 chr12 74500817 74501030 -46756500 - ID_B1 SINE B4 -5 219 3 4 1153 812 186 89 40 chr12 74501078 74501280 -46756250 - B3 SINE B2 0 216 5 5 1153 185 0 40 0 chr12 74501299 74501324 -46756206 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 6 1153 535 301 0 8 chr12 74501324 74501442 -46756088 - RSINE1 SINE B4 -10 155 38 7 1153 2452 157 22 2 chr12 74501455 74501863 -46755667 + MTC LTR MaLR 6 421 0 8 1153 227 225 0 0 chr12 74501863 74501903 -46755627 - RSINE1 SINE B4 -123 42 3 7 1153 195 284 0 0 chr12 74502205 74502293 -46755237 + (TG)n Simple_repeat Simple_repeat 1 88 0 9 1153 226 305 17 0 chr12 74502299 74502385 -46755145 - B4 SINE B4 -169 123 37 1 1153 559 163 22 0 chr12 74502412 74502504 -46755026 - B1_Mus2 SINE Alu 0 147 54 1 1153 818 220 241 155 chr12 74502507 74502996 -46754534 + MT2A LTR ERVL 3 533 0 1 1153 278 237 194 0 chr12 74503690 74503783 -46753747 - PB1D10 SINE Alu -1 116 6 1 1153 262 367 57 34 chr12 74506656 74506831 -46750699 - MER115 DNA Tip100 -260 433 255 1 1153 185 167 122 20 chr12 74507715 74507764 -46749766 + L3 LINE CR1 3559 3612 -877 1 1153 232 229 127 14 chr12 74508144 74508215 -46749315 + ID4_ SINE ID 4 82 -1 1 1153 468 170 14 29 chr12 74508216 74508355 -46749175 + (CATA)n Simple_repeat Simple_repeat 4 140 0 1 1153 1148 238 130 18 chr12 74508748 74509078 -46748452 + ORR1D1 LTR MaLR 1 367 -7 1 1153 486 179 0 0 chr12 74510280 74510375 -46747155 + CT-rich Low_complexity Low_complexity 3 97 0 1 1153 267 289 87 9 chr12 74511119 74511234 -46746296 - MIRb SINE MIR -9 259 136 2 1153 289 272 48 19 chr12 74511371 74511476 -46746054 + PB1D7 SINE Alu 2 109 -11 2 1153 225 0 0 0 chr12 74511476 74511501 -46746029 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1153 616 252 7 35 chr12 74511786 74511930 -46745600 + RSINE1 SINE B4 3 142 -23 2 1153 333 68 0 0 chr12 74511936 74511980 -46745550 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1153 1047 271 32 29 chr12 74512071 74512352 -46745178 - MER58B DNA MER1_type -6 335 54 2 1153 180 0 0 0 chr12 74512538 74512558 -46744972 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1153 623 211 55 0 chr12 74512640 74512814 -46744716 - B3 SINE B2 -1 197 11 2 1153 995 250 9 9 chr12 74512828 74513050 -46744480 - ID_B1 SINE B4 -2 222 1 2 1153 1217 85 6 0 chr12 74513109 74513285 -46744245 + (GAA)n Simple_repeat Simple_repeat 2 178 0 2 1153 793 146 53 8 chr12 74513286 74513417 -46744113 + B1_Mus2 SINE Alu 1 137 -10 3 1153 189 74 0 0 chr12 74513417 74513444 -46744086 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1153 583 269 170 0 chr12 74513611 74513782 -46743748 - MER63A DNA AcHobo 0 210 11 3 1153 180 0 0 0 chr12 74515045 74515065 -46742465 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 1153 807 133 0 0 chr12 74515065 74515230 -46742300 + (CA)n Simple_repeat Simple_repeat 2 166 0 3 1153 234 0 0 0 chr12 74515576 74515602 -46741928 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 3 1153 528 196 108 0 chr12 74516280 74516382 -46741148 + RSINE1 SINE B4 36 148 -17 3 1153 387 0 0 0 chr12 74516406 74516449 -46741081 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 3 1153 309 263 121 0 chr12 74516539 74516638 -46740892 + ID_B1 SINE B4 97 207 -17 3 1153 180 77 0 0 chr12 74516640 74516666 -46740864 + (G)n Simple_repeat Simple_repeat 1 26 0 3 1153 338 329 27 54 chr12 74518775 74518923 -46738607 - MIRc SINE MIR -74 194 51 4 1153 795 128 112 0 chr12 74518995 74519120 -46738410 - B1_Mur4 SINE Alu -11 139 1 4 1153 660 59 0 0 chr12 74519129 74519214 -46738316 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 1153 36116 83 14 6 chr12 74519214 74525513 -46732017 - L1Md_F2 LINE L1 -12 6570 231 4 1153 189 0 0 0 chr12 74526813 74526834 -46730696 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1153 529 291 49 21 chr12 74526877 74526990 -46730540 - RSINE1 SINE B4 -15 150 34 4 1153 1427 160 66 163 chr12 74526990 74527239 -46730291 - RMER10B LTR ERVL 0 398 197 4 1153 1250 64 0 8 chr12 74527239 74527475 -46730055 + (GAA)n Simple_repeat Simple_repeat 1 233 0 4 1153 1427 160 66 163 chr12 74527475 74527665 -46729865 - RMER10B LTR ERVL -202 196 2 4 1153 529 291 49 21 chr12 74527665 74527695 -46729835 - RSINE1 SINE B4 -132 33 4 4 1153 692 269 77 8 chr12 74527912 74528159 -46729371 - MER33 DNA MER1_type -30 294 31 4 1153 496 311 0 13 chr12 74528159 74528309 -46729221 + RSINE1 SINE B4 4 151 -14 4 1153 47 19 0 0 chr12 74528320 74528374 -46729156 + AT_rich Low_complexity Low_complexity 1 54 0 5 1153 27 73 0 0 chr12 74528460 74528515 -46729015 + AT_rich Low_complexity Low_complexity 1 55 0 5 1153 375 305 97 51 chr12 74528656 74528832 -46728698 - MER20 DNA MER1_type -1 218 35 5 1153 524 280 84 0 chr12 74529683 74529826 -46727704 + LTR33 LTR ERVL 33 187 -328 5 1153 762 374 91 23 chr12 74530049 74530435 -46727095 + FordPrefect_a DNA Tip100 97 508 0 5 1153 222 37 0 0 chr12 74530496 74530523 -46727007 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1153 383 0 21 0 chr12 74530523 74530569 -46726961 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1153 27 29 0 0 chr12 74530782 74530816 -46726714 + AT_rich Low_complexity Low_complexity 1 34 0 5 1153 844 201 87 5 chr12 74530816 74531001 -46726529 - B3 SINE B2 -14 202 3 5 1153 321 318 0 0 chr12 74531418 74531506 -46726024 + MLT1B LTR MaLR 303 390 0 5 1153 259 330 34 11 chr12 74531518 74531607 -46725923 + PB1D10 SINE Alu 26 116 -1 6 1153 476 230 8 124 chr12 74531672 74531801 -46725729 - PB1D9 SINE Alu -6 114 1 6 1153 733 204 21 28 chr12 74531801 74531933 -46725597 - B1_Mur1 SINE Alu -7 142 10 6 1153 763 275 75 72 chr12 74531995 74532265 -46725265 + ORR1E LTR MaLR 3 272 -112 6 1153 328 312 35 41 chr12 74532575 74532772 -46724758 - RLTR15 LTR ERVK -119 240 45 6 1153 1087 314 75 22 chr12 74533668 74534345 -46723185 - L1MA5A LINE L1 -1740 5904 5193 6 1153 329 319 56 42 chr12 74534354 74534454 -46723076 + L1ME1 LINE L1 2385 2487 -3659 6 1153 599 262 0 45 chr12 74534454 74534610 -46722920 + B1_Mur1 SINE Alu 1 149 0 6 1153 329 319 56 42 chr12 74534610 74534653 -46722877 + L1ME1 LINE L1 2488 2530 -3616 6 1153 796 274 239 51 chr12 74534717 74535425 -46722105 + L1MC3 LINE L1 6912 7752 -33 6 1153 189 0 0 0 chr12 74535487 74535508 -46722022 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1153 2006 299 56 22 chr12 74535609 74536396 -46721134 + L1ME1 LINE L1 5261 6074 -105 6 1153 1200 131 0 0 chr12 74536418 74536803 -46720727 + (CA)n Simple_repeat Simple_repeat 1 385 0 7 1153 536 250 8 16 chr12 74536821 74536943 -46720587 + B3A SINE B2 1 121 -77 7 1153 507 17 0 0 chr12 74536949 74537009 -46720521 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1153 23 33 0 0 chr12 74537009 74537039 -46720491 + AT_rich Low_complexity Low_complexity 1 30 0 7 1153 806 199 64 12 chr12 74537096 74537269 -46720261 + ORR1C2 LTR MaLR 1 182 -192 7 1153 444 188 52 7 chr12 74537292 74537447 -46720083 + CT-rich Low_complexity Low_complexity 5 166 0 7 1153 903 226 20 20 chr12 74537449 74537652 -46719878 + ORR1C2 LTR MaLR 174 376 -8 7 1153 306 304 71 42 chr12 74537863 74537989 -46719541 - L1M5 LINE L1 -2942 3204 3073 7 1153 1112 88 0 7 chr12 74537989 74538137 -46719393 - B1_Mm SINE Alu 0 147 1 7 1153 306 304 71 42 chr12 74538137 74538178 -46719352 - L1M5 LINE L1 -3074 3072 3032 7 1153 360 0 0 0 chr12 74538213 74538253 -46719277 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 7 1153 1192 92 34 11 chr12 74538253 74538428 -46719102 - B2_Mm1t SINE B2 -13 180 2 7 1153 29 28 0 0 chr12 74538438 74538474 -46719056 + AT_rich Low_complexity Low_complexity 1 36 0 8 1153 186 43 0 0 chr12 74538489 74538512 -46719018 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1153 1215 216 136 21 chr12 74538566 74538731 -46718799 - ORR1D2 LTR MaLR 0 370 177 8 1153 180 0 0 0 chr12 74538731 74538751 -46718779 + (GA)n Simple_repeat Simple_repeat 2 21 0 8 1153 1215 216 136 21 chr12 74538751 74538916 -46718614 - ORR1D2 LTR MaLR -194 176 4 8 1153 336 24 0 0 chr12 74539970 74540011 -46717519 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 8 1153 701 181 79 0 chr12 74540013 74540140 -46717390 - B1_Mur3 SINE Alu -12 137 1 8 1153 378 139 0 0 chr12 74540145 74540217 -46717313 + (T)n Simple_repeat Simple_repeat 1 72 0 8 1153 1124 101 0 0 chr12 74540217 74540365 -46717165 - B1_Mus1 SINE Alu 0 148 1 8 1153 444 19 0 0 chr12 74540366 74540419 -46717111 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 8 1153 1716 235 49 68 chr12 74540488 74540999 -46716531 - RLTR20B3 LTR ERVK -56 521 21 8 1153 289 291 23 23 chr12 74541006 74541094 -46716436 - B1_Mus1 SINE Alu -51 97 10 9 1153 252 299 0 29 chr12 74541115 74541184 -46716346 - B4 SINE B4 -2 290 224 9 1153 701 296 16 57 chr12 74541486 74541730 -46715800 - B4 SINE B4 -58 234 1 9 1153 235 250 122 53 chr12 74542811 74542838 -46714692 - Cheshire DNA MER1_type -820 1600 1499 9 1153 279 375 31 0 chr12 74542838 74542934 -46714596 + PB1 SINE Alu 1 99 -28 9 1153 278 258 15 0 chr12 74542947 74543013 -46714517 + ID4_ SINE ID 1 67 -16 9 1153 232 277 61 15 chr12 74542955 74543021 -46714509 + tRNA-Gly-GGY tRNA tRNA 3 71 -3 9 1153 180 0 0 0 chr12 74543036 74543056 -46714474 + (TGG)n Simple_repeat Simple_repeat 3 22 0 9 1153 227 308 132 0 chr12 74543061 74543152 -46714378 - MIR SINE MIR -13 249 147 9 1153 709 254 41 41 chr12 74543333 74543530 -46714000 + B3A SINE B2 2 198 0 9 1153 1345 199 126 29 chr12 74543670 74544011 -46713519 + ORR1D1 LTR MaLR 1 374 0 9 1153 1418 234 227 36 chr12 74544079 74544655 -46712875 + Lx9 LINE L1 5866 6551 -1093 1 1153 424 243 126 11 chr12 74544655 74544838 -46712692 + Lx9 LINE L1 7412 7615 -29 1 1153 3033 232 75 47 chr12 74544874 74545740 -46711790 + RMER19B LTR ERVK 1 890 -12 1 1153 335 23 23 0 chr12 74545774 74545818 -46711712 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1153 1152 283 29 3 chr12 74546715 74547030 -46710500 - Tigger9b DNA MER2_type -3 621 299 1 1153 321 343 114 30 chr12 74547049 74547286 -46710244 - Tigger9a DNA Tigger -261 471 215 1 1153 404 280 0 78 chr12 74547395 74547511 -46710019 - PB1D10 SINE Alu 0 117 11 1 1153 387 0 0 0 chr12 74547572 74547615 -46709915 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1153 247 157 29 0 chr12 74547626 74547696 -46709834 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1153 207 0 0 0 chr12 74547812 74547835 -46709695 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1153 288 0 0 0 chr12 74548134 74548166 -46709364 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1153 859 176 15 0 chr12 74548166 74548302 -46709228 - B1_Mur4 SINE Alu -11 139 2 1 1153 225 0 0 0 chr12 74548644 74548669 -46708861 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1153 526 238 29 0 chr12 74548673 74548778 -46708752 - B1_Mur1 SINE Alu -39 110 3 1 1153 279 238 43 97 chr12 74548698 74548791 -46708739 - MT2B LTR ERVL -361 240 153 1 1153 27 62 0 0 chr12 74548791 74548839 -46708691 + AT_rich Low_complexity Low_complexity 1 48 0 1 1153 291 327 28 28 chr12 74548842 74548949 -46708581 + PB1D10 SINE Alu 1 107 -10 1 1153 1154 35 28 0 chr12 74549209 74549352 -46708178 - B1_Mm SINE Alu 0 147 1 1 1153 180 0 0 0 chr12 74550508 74550528 -46707002 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1153 191 345 77 34 chr12 74550744 74550861 -46706669 - L2a LINE L2 -13 3413 3292 1 1153 821 231 64 0 chr12 74551213 74551416 -46706114 + B3 SINE B2 1 216 0 1 1153 546 153 258 0 chr12 74552267 74552391 -46705139 - URR1A DNA MER1_type -70 156 1 1 1153 800 157 0 7 chr12 74554030 74554178 -46703352 + CT-rich Low_complexity Low_complexity 4 150 0 1 1153 713 135 8 0 chr12 74555092 74555218 -46702312 + (GA)n Simple_repeat Simple_repeat 1 127 0 1 1153 216 333 0 0 chr12 74555243 74555312 -46702218 - MIRc SINE MIR -91 177 109 1 1153 216 0 0 0 chr12 74556087 74556111 -46701419 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 1 1153 277 375 80 27 chr12 74556247 74556487 -46701043 - LTR16A LTR ERVL -198 253 1 1 1153 804 200 0 0 chr12 74556679 74556809 -46700721 - B3 SINE B2 -84 132 3 1 1153 1157 43 7 0 chr12 74557242 74557381 -46700149 - B1_Mus1 SINE Alu -7 141 2 1 1153 267 350 24 0 chr12 74558182 74558305 -46699225 + Lx8 LINE L1 7037 7162 -311 1 1153 227 103 0 25 chr12 74558318 74558358 -46699172 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 1 1153 3493 28 2 0 chr12 74558443 74558838 -46698692 - MTA_Mm LTR MaLR 0 396 1 1 1153 358 237 40 40 chr12 74558908 74559009 -46698521 + RMER15 LTR ERVL 432 532 -43 1 1153 237 354 10 30 chr12 74559048 74559147 -46698383 + MTE2b LTR MaLR 1 97 -282 1 1153 1017 304 53 0 chr12 74559153 74559416 -46698114 + MTE2b LTR MaLR 58 334 -45 1 1153 275 360 6 11 chr12 74559841 74560021 -46697509 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 1 1153 201 94 0 0 chr12 74560257 74560289 -46697241 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 1153 346 245 127 89 chr12 74560304 74560461 -46697069 - RSINE1 SINE B4 -1 164 2 1 1153 492 18 0 0 chr12 74561977 74562034 -46695496 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1153 240 35 0 0 chr12 74562143 74562172 -46695358 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1153 1039 76 38 0 chr12 74562172 74562304 -46695226 - B1_Mus1 SINE Alu -10 138 2 1 1153 461 296 51 70 chr12 74562565 74562779 -46694751 + ID_B1 SINE B4 2 211 -13 1 1153 756 86 0 0 chr12 74562779 74562884 -46694646 + (GAAA)n Simple_repeat Simple_repeat 3 107 0 1 1153 208 143 29 0 chr12 74562884 74562919 -46694611 + GA-rich Low_complexity Low_complexity 1 36 0 1 1153 434 169 118 24 chr12 74563783 74563868 -46693662 + B1_Mus1 SINE Alu 18 110 -38 1 1153 417 254 67 42 chr12 74563937 74564056 -46693474 - B1F1 SINE Alu -7 142 21 1 1153 183 304 42 28 chr12 74564383 74564454 -46693076 + MIRm SINE MIR 88 159 -117 1 1153 1182 75 109 0 chr12 74564798 74564972 -46692558 - B2_Mm2 SINE B2 -2 193 1 1 1153 182 319 0 0 chr12 74565216 74565263 -46692267 + L2c LINE L2 3272 3318 -69 1 1153 270 116 0 0 chr12 74566502 74566545 -46690985 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1153 605 221 85 144 chr12 74567993 74568194 -46689336 - B3A SINE B2 -2 191 3 1 1153 1735 255 31 45 chr12 74568266 74568625 -46688905 + Lx6 LINE L1 6979 7334 -126 1 1153 531 0 0 0 chr12 74568625 74568684 -46688846 + (GGA)n Simple_repeat Simple_repeat 1 59 0 1 1153 1735 255 31 45 chr12 74568684 74568813 -46688717 + Lx6 LINE L1 7335 7460 0 1 1153 421 262 37 24 chr12 74568816 74568980 -46688550 - L1MEg LINE L1 -4222 1862 1697 1 1153 1294 263 46 17 chr12 74568988 74569333 -46688197 + MLT1A0 LTR MaLR 3 357 -8 1 1153 552 220 91 5 chr12 74569342 74569552 -46687978 - L1MEg LINE L1 -4390 1694 1467 1 1153 352 310 79 37 chr12 74570207 74570371 -46687159 - MLT1B LTR MaLR -219 171 1 1 1153 529 246 73 0 chr12 74571021 74571131 -46686399 - B1F2 SINE Alu -31 118 1 1 1153 1870 103 136 16 chr12 74571198 74571514 -46686016 - ORR1B1 LTR MaLR 0 394 41 1 1153 487 264 81 27 chr12 74571595 74571743 -46685787 - LTR40a LTR ERVL -363 156 1 1 1153 747 219 29 23 chr12 74571888 74572061 -46685469 + B3A SINE B2 24 197 -1 1 1153 450 0 0 0 chr12 74572615 74572665 -46684865 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 1 1153 659 185 17 17 chr12 74574036 74574212 -46683318 + GA-rich Low_complexity Low_complexity 5 180 0 1 1153 189 107 0 0 chr12 74574682 74574710 -46682820 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 1153 242 288 133 22 chr12 74574710 74574845 -46682685 - MIR SINE MIR -64 198 49 1 1153 495 229 0 0 chr12 74575106 74575224 -46682306 + (CA)n Simple_repeat Simple_repeat 2 119 0 1 1153 1095 125 144 10 chr12 74575224 74575418 -46682112 - Lx4A LINE L1 -11 7047 6828 1 1153 1368 71 14 0 chr12 74575415 74575603 -46681927 - Lx4A LINE L1 -1097 5961 5731 1 1153 1245 67 0 0 chr12 74576437 74576601 -46680929 + (TTCTCC)n Simple_repeat Simple_repeat 6 169 0 1 1153 225 0 0 0 chr12 74576867 74576892 -46680638 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1153 329 342 28 61 chr12 74576944 74577026 -46680504 - L1MC2 LINE L1 -161 6183 6102 1 1153 1201 152 108 0 chr12 74577026 74577230 -46680300 - URR1A DNA MER1_type 0 226 1 1 1153 329 342 28 61 chr12 74577230 74577359 -46680171 - L1MC2 LINE L1 -243 6101 5980 1 1153 1041 97 7 0 chr12 74577921 74578066 -46679464 - URR1A DNA MER1_type 0 226 81 1 1153 405 0 0 0 chr12 74578135 74578180 -46679350 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1153 405 0 0 0 chr12 74578180 74578224 -46679306 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1153 248 342 26 0 chr12 74578320 74578396 -46679134 + MER5A1 DNA MER1_type 85 162 -4 1 1154 725 311 32 60 chr12 74580024 74580427 -46677103 - BGLII_B LTR ERVK -18 423 32 1 1154 221 159 0 0 chr12 74581671 74581715 -46675815 + A-rich Low_complexity Low_complexity 1 44 0 1 1154 187 329 59 85 chr12 74582189 74582342 -46675188 - L2c LINE L2 0 3387 3239 1 1154 180 0 0 0 chr12 74582557 74582577 -46674953 + (GGGAGA)n Simple_repeat Simple_repeat 4 23 0 1 1154 472 291 6 41 chr12 74583042 74583214 -46674316 - MER121 Unknown Unknown -170 242 77 1 1154 216 371 29 0 chr12 74583335 74583440 -46674090 - L2b LINE L2 -5 3370 3263 1 1154 187 314 0 0 chr12 74583625 74583676 -46673854 + MIRm SINE MIR 225 275 -1 1 1154 298 221 41 21 chr12 74583784 74583881 -46673649 + GA-rich Low_complexity Low_complexity 3 101 0 1 1154 240 307 176 10 chr12 74584206 74584308 -46673222 - LTR16A1 LTR ERVL -36 420 302 1 1154 418 280 42 8 chr12 74584489 74584608 -46672922 + PB1 SINE Alu 5 127 0 1 1154 202 151 37 19 chr12 74584632 74584686 -46672844 + GA-rich Low_complexity Low_complexity 2 56 0 1 1154 231 312 94 0 chr12 74584894 74584990 -46672540 - L4 LINE RTE -476 1553 1449 1 1154 383 0 0 21 chr12 74584992 74585040 -46672490 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 1 1154 1231 35 0 0 chr12 74585042 74585183 -46672347 - B1_Mm SINE Alu -5 142 2 1 1154 189 227 0 22 chr12 74585196 74585241 -46672289 + L3 LINE CR1 3164 3207 -1282 1 1154 22 56 0 0 chr12 74585432 74585468 -46672062 + AT_rich Low_complexity Low_complexity 1 36 0 1 1154 1005 247 70 138 chr12 74585539 74585678 -46671852 - ORR1E LTR MaLR 0 359 252 1 1154 243 0 0 0 chr12 74585678 74585705 -46671825 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1 1154 1005 247 70 138 chr12 74585705 74585950 -46671580 - ORR1E LTR MaLR -108 251 1 1 1154 692 139 29 33 chr12 74586435 74586713 -46670817 + GA-rich Low_complexity Low_complexity 1 276 0 1 1154 251 254 133 16 chr12 74586838 74586966 -46670564 + MER21B LTR ERV1 98 240 -623 1 1154 407 338 79 23 chr12 74587005 74587220 -46670310 + MER77 LTR ERVL 378 604 -3 1 1154 829 284 104 46 chr12 74587220 74587363 -46670167 + MER21B LTR ERV1 569 730 -133 1 1154 437 367 101 33 chr12 74587498 74587924 -46669606 - L4 LINE RTE -1275 754 300 1 1154 1375 57 57 0 chr12 74588276 74588453 -46669077 + B2_Mm2 SINE B2 1 187 -8 1 1154 203 229 0 77 chr12 74588456 74588508 -46669022 - L4 LINE RTE -1748 281 234 1 1154 612 73 0 0 chr12 74589639 74589721 -46667809 + (TC)n Simple_repeat Simple_repeat 2 83 0 1 1154 2029 199 56 13 chr12 74590208 74590604 -46666926 - MTD LTR MaLR 0 419 7 1 1154 777 141 0 97 chr12 74590735 74590772 -46666758 - B1_Mur3 SINE Alu 0 149 77 1 1154 244 217 0 228 chr12 74590772 74590819 -46666711 - MT2B LTR ERVL -337 264 228 1 1154 3757 75 87 17 chr12 74590819 74591346 -46666184 - LTRIS2 LTR ERV1 0 564 1 1 1154 777 141 0 97 chr12 74591346 74591426 -46666104 - B1_Mur3 SINE Alu -73 76 1 1 1154 244 217 0 228 chr12 74591426 74591447 -46666083 - MT2B LTR ERVL -374 227 150 1 1154 201 158 0 0 chr12 74591546 74591584 -46665946 + T-rich Low_complexity Low_complexity 2 39 0 1 1154 412 232 127 8 chr12 74591612 74591738 -46665792 - B1F SINE Alu 0 149 9 2 1154 230 276 58 23 chr12 74591921 74592095 -46665435 - L1MEd LINE L1 -5020 1099 920 2 1154 279 157 0 0 chr12 74592135 74592186 -46665344 + A-rich Low_complexity Low_complexity 1 51 0 2 1154 373 368 64 22 chr12 74592189 74592456 -46665074 - L1MEd LINE L1 -5299 820 543 2 1154 1327 284 75 25 chr12 74592907 74593344 -46664186 + MLT2C2 LTR ERVL 1 459 -5 2 1154 306 0 0 0 chr12 74594365 74594399 -46663131 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1154 273 266 0 0 chr12 74594511 74594575 -46662955 - ID2 SINE ID -15 68 5 2 1154 489 223 90 8 chr12 74594880 74595002 -46662528 + B1F SINE Alu 18 149 0 2 1154 377 254 0 0 chr12 74595014 74595106 -46662424 + ID4_ SINE ID 3 94 -58 2 1154 1041 89 0 0 chr12 74595659 74595805 -46661725 + (GGAGA)n Simple_repeat Simple_repeat 1 146 0 2 1154 2357 111 17 0 chr12 74596824 74597175 -46660355 - RLTR15 LTR ERVK -2 357 1 2 1154 355 114 28 34 chr12 74597960 74598068 -46659462 - B2_Mm2 SINE B2 -4 191 47 2 1154 1288 102 23 0 chr12 74598081 74598258 -46659272 - B2_Mm2 SINE B2 -14 181 1 2 1154 234 235 155 36 chr12 74598262 74598346 -46659184 - MLT1A1 LTR MaLR -61 347 254 2 1154 215 220 0 20 chr12 74598826 74598877 -46658653 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1154 456 19 0 0 chr12 74599856 74599909 -46657621 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1154 243 0 0 0 chr12 74601323 74601350 -46656180 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1154 225 0 0 0 chr12 74602388 74602413 -46655117 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1154 341 102 0 17 chr12 74602413 74602472 -46655058 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1154 237 190 52 0 chr12 74602549 74602607 -46654923 - L1MC3 LINE L1 -10 7775 7715 2 1154 399 258 92 56 chr12 74602722 74602937 -46654593 - L1MC3 LINE L1 -354 7641 7340 2 1154 530 284 26 137 chr12 74603099 74603332 -46654198 - B4 SINE B4 0 292 86 2 1154 647 272 25 0 chr12 74603323 74603485 -46654045 - B4 SINE B4 -124 168 3 2 1154 450 0 0 0 chr12 74604183 74604233 -46653297 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1154 2737 153 59 29 chr12 74605028 74605572 -46651958 + RLTR31_Mm LTR ERVK 1 560 -1 2 1154 381 22 0 0 chr12 74605900 74605946 -46651584 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1154 326 331 42 78 chr12 74606024 74606217 -46651313 + MIR SINE MIR 64 249 -13 2 1154 721 221 62 67 chr12 74606457 74606651 -46650879 + B3A SINE B2 2 194 -4 2 1154 414 290 104 18 chr12 74607520 74607575 -46649955 + L1M5 LINE L1 5537 5591 -533 2 1154 186 43 0 0 chr12 74607575 74607598 -46649932 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1154 414 290 104 18 chr12 74607598 74607763 -46649767 + L1M5 LINE L1 5592 5776 -348 2 1154 225 0 0 0 chr12 74608235 74608260 -46649270 + (CGAG)n Simple_repeat Simple_repeat 1 25 0 2 1154 335 331 91 12 chr12 74609685 74609850 -46647680 + MIR SINE MIR 78 255 -7 2 1154 1355 118 108 0 chr12 74610472 74610676 -46646854 + URR1A DNA MER1_type 1 226 0 2 1154 281 239 77 35 chr12 74610880 74611023 -46646507 + L1ME4a LINE L1 5966 6114 -10 2 1154 428 269 0 63 chr12 74611476 74611587 -46645943 - PB1D10 SINE Alu -8 109 6 2 1154 323 219 0 19 chr12 74611596 74611703 -46645827 + (CATATA)n Simple_repeat Simple_repeat 4 108 0 2 1154 523 283 67 67 chr12 74611726 74611919 -46645611 + B3A SINE B2 3 195 -3 2 1154 373 112 50 0 chr12 74613214 74613294 -46644236 + (TCTCTG)n Simple_repeat Simple_repeat 3 86 0 2 1154 288 0 0 0 chr12 74613928 74613960 -46643570 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1154 270 0 0 0 chr12 74615341 74615371 -46642159 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1154 201 132 0 0 chr12 74615702 74615740 -46641790 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 2 1154 346 257 0 132 chr12 74616188 74616385 -46641145 - Lx8 LINE L1 -2 7471 7301 2 1154 364 259 76 25 chr12 74616392 74616511 -46641019 - Lx8 LINE L1 -346 7127 7003 2 1154 1198 259 166 0 chr12 74616682 74616770 -46640760 + L1MC1 LINE L1 5694 5781 -552 2 1154 485 71 14 0 chr12 74616770 74616840 -46640690 + (TAA)n Simple_repeat Simple_repeat 2 72 0 2 1154 1198 259 166 0 chr12 74616840 74617180 -46640350 + L1MC1 LINE L1 5782 6192 -141 2 1154 1051 123 0 0 chr12 74617447 74617593 -46639937 + B1_Mus2 SINE Alu 2 147 0 2 1154 21 0 0 0 chr12 74617599 74617620 -46639910 + AT_rich Low_complexity Low_complexity 1 21 0 2 1154 409 227 305 7 chr12 74617628 74617779 -46639751 - B3A SINE B2 -1 197 2 2 1154 180 0 0 0 chr12 74618586 74618606 -46638924 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1154 1602 205 84 3 chr12 74619506 74619839 -46637691 + MTD LTR MaLR 34 393 -26 2 1154 339 25 0 0 chr12 74620838 74620878 -46636652 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1154 182 337 67 38 chr12 74620915 74621020 -46636510 - MIRb SINE MIR -5 263 156 2 1154 378 0 0 0 chr12 74622880 74622922 -46634608 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1154 26 0 0 0 chr12 74622984 74623010 -46634520 + AT_rich Low_complexity Low_complexity 1 26 0 2 1154 330 250 0 93 chr12 74625407 74625504 -46632026 + RSINE1 SINE B4 78 165 0 2 1154 206 128 0 25 chr12 74625508 74625548 -46631982 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1154 180 0 0 0 chr12 74626021 74626041 -46631489 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1154 363 249 15 0 chr12 74626044 74626126 -46631404 + PB1D10 SINE Alu 22 110 -10 2 1154 868 304 107 4 chr12 74627073 74627236 -46630294 + L1ME2 LINE L1 5560 5735 -429 2 1154 225 0 0 0 chr12 74627236 74627261 -46630269 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 1154 868 304 107 4 chr12 74627261 74627547 -46629983 + L1ME2 LINE L1 5736 6055 -109 2 1154 932 272 22 81 chr12 74627568 74627853 -46629677 + B4 SINE B4 36 292 0 2 1154 180 0 0 0 chr12 74627853 74627873 -46629657 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1154 197 348 0 14 chr12 74628179 74628249 -46629281 - MIRb SINE MIR -14 254 186 2 1154 215 346 69 19 chr12 74628723 74628882 -46628648 - MIRb SINE MIR -51 217 51 2 1154 472 65 26 0 chr12 74629169 74629246 -46628284 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1154 975 55 18 31 chr12 74629257 74629485 -46628045 + (TG)n Simple_repeat Simple_repeat 1 224 0 2 1154 232 362 14 58 chr12 74630146 74630284 -46627246 - MIRb SINE MIR -71 197 66 2 1154 21 0 0 0 chr12 74630616 74630637 -46626893 + AT_rich Low_complexity Low_complexity 1 21 0 2 1154 685 318 73 8 chr12 74630686 74630933 -46626597 + B4A SINE B4 8 270 -22 2 1154 229 308 72 62 chr12 74631205 74631302 -46626228 - MER103 DNA DNA -35 131 34 2 1154 21 0 0 0 chr12 74631343 74631364 -46626166 + AT_rich Low_complexity Low_complexity 1 21 0 2 1154 486 0 0 0 chr12 74631418 74631472 -46626058 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1154 807 167 80 0 chr12 74631476 74631614 -46625916 - B1_Mur4 SINE Alu -1 149 1 2 1154 1642 122 197 23 chr12 74631614 74631805 -46625725 - ORR1B2 LTR MaLR -4 363 167 2 1154 297 0 0 0 chr12 74631805 74631838 -46625692 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1154 468 0 0 0 chr12 74631838 74631889 -46625641 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1154 1642 122 197 23 chr12 74631889 74632005 -46625525 - ORR1B2 LTR MaLR -201 166 2 2 1154 210 37 0 0 chr12 74632053 74632080 -46625450 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2 1154 702 47 0 0 chr12 74632098 74632184 -46625346 - B1_Mm SINE Alu 0 147 62 2 1154 235 125 0 51 chr12 74632530 74632589 -46624941 + G-rich Low_complexity Low_complexity 1 56 0 2 1154 478 299 55 10 chr12 74633763 74633962 -46623568 - Kanga1a DNA Tc2 -6 748 541 2 1154 419 209 33 11 chr12 74633992 74634084 -46623446 + ID_B1 SINE B4 129 222 -2 2 1154 241 339 48 48 chr12 74634074 74634198 -46623332 - Kanga1a DNA Tc2 -205 549 426 2 1154 361 231 9 188 chr12 74634238 74634350 -46623180 - Kanga1a DNA Tc2 -626 128 35 2 1154 24 0 0 0 chr12 74634791 74634815 -46622715 + AT_rich Low_complexity Low_complexity 1 24 0 2 1154 261 0 0 0 chr12 74634816 74634845 -46622685 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 1154 330 185 19 0 chr12 74634857 74634911 -46622619 + 5S rRNA rRNA 1 55 -66 2 1154 447 296 9 0 chr12 74634926 74635034 -46622496 + PB1D10 SINE Alu 1 109 -8 2 1154 210 327 18 0 chr12 74635053 74635108 -46622422 + ID4_ SINE ID 15 70 -13 2 1154 35 24 0 0 chr12 74635379 74635421 -46622109 + AT_rich Low_complexity Low_complexity 1 42 0 2 1154 472 223 52 44 chr12 74635429 74635565 -46621965 - RSINE1 SINE B4 -15 150 14 2 1154 281 356 69 0 chr12 74635564 74635665 -46621865 - PB1D7 SINE Alu -11 109 2 2 1154 299 79 0 87 chr12 74636138 74636159 -46621371 + A-rich Low_complexity Low_complexity 1 18 0 2 1154 1197 36 0 0 chr12 74636159 74636299 -46621231 + B1_Mm SINE Alu 1 140 -7 2 1154 299 79 0 87 chr12 74636299 74636346 -46621184 + A-rich Low_complexity Low_complexity 19 63 0 2 1154 212 378 83 24 chr12 74636928 74637096 -46620434 + MIRb SINE MIR 59 236 -32 2 1154 188 276 158 0 chr12 74638513 74638589 -46618941 - L2a LINE L2 -6 3420 3333 2 1154 225 0 0 0 chr12 74638589 74638614 -46618916 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1154 1124 129 17 17 chr12 74639191 74639372 -46618158 + ORR1D1 LTR MaLR 1 181 -193 2 1154 756 149 35 0 chr12 74639372 74639546 -46617984 + CT-rich Low_complexity Low_complexity 1 180 0 2 1154 1046 200 9 38 chr12 74639603 74639816 -46617714 + ORR1D1 LTR MaLR 177 383 -1 2 1154 338 293 153 11 chr12 74640213 74640389 -46617141 + B4A SINE B4 15 215 -77 2 1154 636 250 103 35 chr12 74640390 74640593 -46616937 + Lx8 LINE L1 6946 7162 -311 2 1154 210 37 0 0 chr12 74640595 74640622 -46616908 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1154 655 103 37 26 chr12 74640880 74641235 -46616295 + (CA)n Simple_repeat Simple_repeat 1 359 0 2 1154 595 122 34 28 chr12 74641294 74641471 -46616059 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1154 893 230 30 5 chr12 74641653 74641854 -46615676 + B3 SINE B2 1 206 -10 2 1154 272 250 0 0 chr12 74641864 74641916 -46615614 + RSINE1 SINE B4 90 141 -24 2 1154 203 56 54 27 chr12 74641993 74642030 -46615500 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 1154 1128 65 0 0 chr12 74642034 74642172 -46615358 + B1_Mm SINE Alu 2 139 -8 2 1154 239 71 24 0 chr12 74642172 74642214 -46615316 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1154 360 266 11 117 chr12 74642363 74642542 -46614988 - RSINE1 SINE B4 -2 163 4 3 1154 362 37 56 0 chr12 74643751 74643805 -46613725 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 3 1154 21 89 0 0 chr12 74645051 74645107 -46612423 + AT_rich Low_complexity Low_complexity 1 56 0 3 1154 27 73 0 0 chr12 74647424 74647479 -46610051 + GC_rich Low_complexity Low_complexity 1 55 0 3 1154 268 133 16 16 chr12 74647651 74647712 -46609818 + CT-rich Low_complexity Low_complexity 1 61 0 3 1154 1136 179 152 4 chr12 74648734 74649048 -46608482 + MTD LTR MaLR 35 409 -12 3 1154 1732 184 78 38 chr12 74649598 74650021 -46607509 + RMER10A LTR ERVL 1 440 -2 3 1154 391 210 189 41 chr12 74651136 74651305 -46606225 + RLTR42-int LTR ERVK 1580 1782 -3740 3 1154 277 256 76 95 chr12 74651400 74651697 -46605833 + RLTR11A LTR ERVK 12 273 -255 3 1154 370 269 33 8 chr12 74652022 74652142 -46605388 - L1MEg LINE L1 -4125 1959 1837 3 1154 1973 105 28 22 chr12 74652322 74652642 -46604888 - RLTRETN_Mm LTR ERVK 0 322 1 3 1154 194 128 26 0 chr12 74652995 74653034 -46604496 + CT-rich Low_complexity Low_complexity 4 43 0 3 1154 317 330 96 0 chr12 74653179 74653294 -46604236 - L1M5 LINE L1 -351 5773 5648 3 1154 859 167 7 28 chr12 74653360 74653502 -46604028 - B1_Mur4 SINE Alu -9 141 3 3 1154 781 206 200 0 chr12 74653806 74653986 -46603544 + B3 SINE B2 1 216 0 3 1154 2055 148 70 14 chr12 74654099 74654469 -46603061 + MTC LTR MaLR 31 421 0 3 1154 184 206 0 0 chr12 74654504 74654538 -46602992 - MIRb SINE MIR 0 268 235 3 1154 382 260 45 71 chr12 74655962 74656074 -46601456 + PB1D10 SINE Alu 1 109 -8 3 1154 835 147 21 7 chr12 74656141 74656285 -46601245 - Lx5 LINE L1 -109 6941 6796 3 1154 244 283 34 37 chr12 74656299 74656427 -46601103 - RSINE1 SINE B4 -166 126 2 3 1154 24 32 0 0 chr12 74656691 74656722 -46600808 + AT_rich Low_complexity Low_complexity 1 31 0 3 1154 922 128 46 58 chr12 74657147 74657289 -46600241 + B2_Mm2 SINE B2 6 146 -49 3 1154 342 0 0 0 chr12 74657289 74657327 -46600203 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 1154 922 128 46 58 chr12 74657327 74657358 -46600172 + B2_Mm2 SINE B2 147 177 -18 3 1154 291 54 0 0 chr12 74657361 74657398 -46600132 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1154 641 151 0 8 chr12 74657389 74657509 -46600021 + (TA)n Simple_repeat Simple_repeat 2 120 0 3 1154 260 259 0 2 chr12 74658092 74658156 -46599374 - B1F SINE Alu -21 99 37 3 1154 685 276 9 78 chr12 74659549 74659781 -46597749 - B3 SINE B2 0 216 1 3 1154 289 387 60 24 chr12 74659796 74660045 -46597485 - L4 LINE RTE -666 1363 1106 3 1154 633 115 0 0 chr12 74660060 74660156 -46597374 + (CACG)n Simple_repeat Simple_repeat 1 96 0 3 1154 748 290 60 15 chr12 74660330 74660596 -46596934 - L4 LINE RTE -1584 445 168 3 1154 25 0 0 0 chr12 74660877 74660902 -46596628 + AT_rich Low_complexity Low_complexity 1 25 0 3 1154 1337 96 32 5 chr12 74662062 74662250 -46595280 + B2_Mm1t SINE B2 1 193 0 3 1154 561 289 132 26 chr12 74662442 74662686 -46594844 + B4 SINE B4 40 290 -2 3 1154 839 243 6 6 chr12 74662860 74663030 -46594500 - ID_B1 SINE B4 -11 213 44 3 1154 205 171 0 0 chr12 74663032 74663067 -46594463 + (CATG)n Simple_repeat Simple_repeat 2 36 0 3 1154 2276 119 3 3 chr12 74663091 74663410 -46594120 + ORR1A2 LTR MaLR 1 319 -8 3 1154 496 299 344 14 chr12 74663549 74663834 -46593696 - MTEb LTR MaLR 0 379 1 3 1154 3189 67 0 108 chr12 74663848 74664337 -46593193 + RLTR10C LTR ERVK 1 436 0 3 1154 35 41 0 0 chr12 74664908 74664957 -46592573 + AT_rich Low_complexity Low_complexity 1 49 0 3 1154 231 61 0 0 chr12 74665492 74665525 -46592005 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1154 253 304 0 14 chr12 74667313 74667383 -46590147 + L2b LINE L2 3306 3374 -1 3 1154 336 243 68 0 chr12 74667460 74667534 -46589996 - ID2 SINE ID -4 79 1 3 1154 251 362 58 58 chr12 74668054 74668181 -46589349 - MIR SINE MIR -33 229 106 3 1154 1009 123 6 6 chr12 74668181 74668352 -46589178 + (TTCC)n Simple_repeat Simple_repeat 2 172 0 3 1154 1207 85 15 120 chr12 74668352 74668552 -46588978 - B2_Mm2 SINE B2 -16 179 1 3 1154 251 362 58 58 chr12 74668552 74668631 -46588899 - MIR SINE MIR -157 105 23 3 1154 255 170 0 0 chr12 74668870 74668917 -46588613 + CT-rich Low_complexity Low_complexity 2 48 0 3 1154 465 201 15 22 chr12 74669011 74669148 -46588382 + (TATG)n Simple_repeat Simple_repeat 1 136 0 3 1154 2195 140 46 9 chr12 74669171 74669517 -46588013 - ORR1B2 LTR MaLR -8 359 1 3 1154 507 73 0 0 chr12 74669522 74669590 -46587940 + (TATG)n Simple_repeat Simple_repeat 2 69 0 3 1154 409 222 196 14 chr12 74669654 74669995 -46587535 - L1MEc LINE L1 -2898 3421 3002 3 1154 256 349 38 0 chr12 74670038 74670144 -46587386 - L1MEc LINE L1 -3404 2915 2806 3 1154 1091 184 5 32 chr12 74670168 74670387 -46587143 + B3 SINE B2 1 213 -3 3 1154 2345 158 37 0 chr12 74670548 74670929 -46586601 - MTC LTR MaLR -8 413 19 3 1154 537 329 48 52 chr12 74670958 74671341 -46586189 - L1MEc LINE L1 -3699 2620 2234 3 1154 450 0 0 0 chr12 74671341 74671391 -46586139 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 1154 1128 59 0 0 chr12 74671391 74671527 -46586003 - B1_Mm SINE Alu -10 137 2 3 1154 532 316 40 62 chr12 74671527 74671557 -46585973 - L1MEc LINE L1 -4167 2233 2204 3 1154 249 282 71 18 chr12 74671568 74671680 -46585850 + Lx8 LINE L1 7128 7245 -228 3 1154 494 255 0 0 chr12 74671680 74671782 -46585748 - MTC LTR MaLR 0 421 320 3 1154 241 295 22 33 chr12 74671805 74671896 -46585634 + MER3 DNA MER1_type 116 205 -4 3 1154 293 311 156 0 chr12 74671978 74672068 -46585462 + RSINE1 SINE B4 2 105 -60 3 1154 192 111 0 0 chr12 74672116 74672152 -46585378 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1154 522 304 174 57 chr12 74672168 74672503 -46585027 - L1MEc LINE L1 -4356 2059 1686 3 1154 475 218 57 119 chr12 74672503 74672515 -46585015 - B3A SINE B2 -16 182 175 3 1154 348 127 0 0 chr12 74672515 74672570 -46584960 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1154 475 218 57 119 chr12 74672570 74672750 -46584780 - B3A SINE B2 -24 174 2 3 1154 522 304 174 57 chr12 74672750 74672993 -46584537 - L1MEc LINE L1 -4730 1685 1413 3 1154 362 241 46 0 chr12 74673215 74673302 -46584228 - PB1D10 SINE Alu 0 117 27 3 1154 264 296 35 14 chr12 74673302 74673446 -46584084 + CT-rich Low_complexity Low_complexity 2 148 0 3 1154 307 242 0 0 chr12 74673461 74673523 -46584007 - tRNA-Ala-GCY_ tRNA tRNA -11 64 3 3 1154 23 0 0 0 chr12 74673558 74673581 -46583949 + AT_rich Low_complexity Low_complexity 1 23 0 3 1154 1546 38 16 0 chr12 74673581 74673765 -46583765 - B2_Mm2 SINE B2 -7 188 2 3 1154 229 270 48 0 chr12 74673825 74673888 -46583642 + ID4_ SINE ID 15 80 -3 3 1154 1151 253 20 47 chr12 74674056 74674169 -46583361 + B4A SINE B4 1 118 -174 3 1154 1696 197 80 14 chr12 74674169 74674519 -46583011 - ORR1D1 LTR MaLR 0 374 2 3 1154 1151 253 20 47 chr12 74674519 74674674 -46582856 + B4A SINE B4 119 265 -27 3 1154 456 91 0 0 chr12 74674674 74674740 -46582790 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1154 1151 253 20 47 chr12 74674740 74674769 -46582761 + B4A SINE B4 266 290 -2 3 1154 299 195 325 6 chr12 74675289 74675451 -46582079 - B3A SINE B2 -4 189 1 3 1154 819 200 38 0 chr12 74676441 74676601 -46580929 - URR1A DNA MER1_type -29 197 32 3 1154 600 225 0 0 chr12 74676704 74676824 -46580706 - PB1D9 SINE Alu 0 120 1 3 1154 189 0 0 0 chr12 74676836 74676857 -46580673 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1154 235 212 64 149 chr12 74676872 74676966 -46580564 - B3A SINE B2 -109 89 4 3 1154 234 150 0 0 chr12 74677057 74677097 -46580433 + (TTG)n Simple_repeat Simple_repeat 2 41 0 3 1154 297 151 0 0 chr12 74677097 74677150 -46580380 + CT-rich Low_complexity Low_complexity 3 55 0 3 1154 198 0 0 0 chr12 74677262 74677284 -46580246 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 1154 333 62 0 0 chr12 74677353 74677401 -46580129 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1154 998 51 0 145 chr12 74677401 74677560 -46579970 - B1_Mm SINE Alu -10 137 2 3 1154 396 0 0 0 chr12 74678119 74678163 -46579367 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1154 204 348 112 48 chr12 74679745 74679909 -46577621 + MIRc SINE MIR 82 257 -11 3 1154 366 107 0 0 chr12 74680461 74680517 -46577013 + (ATG)n Simple_repeat Simple_repeat 1 56 0 3 1154 287 277 153 57 chr12 74680855 74681012 -46576518 + MLT1K LTR MaLR 258 429 -166 3 1154 680 140 27 6 chr12 74681020 74681149 -46576381 + B1_Mur4 SINE Alu 12 138 -11 3 1154 262 289 65 37 chr12 74681082 74681190 -46576340 - B1F2 SINE Alu -38 111 1 3 1154 237 201 7 162 chr12 74681212 74681300 -46576230 + PB1D9 SINE Alu 48 142 -8 3 1154 392 307 17 34 chr12 74681525 74681643 -46575887 - PB1 SINE Alu -11 116 1 3 1154 842 345 84 34 chr12 74681921 74682140 -46575390 + L2 LINE L2 2051 2281 -1138 3 1154 894 92 0 0 chr12 74682140 74682270 -46575260 + (TTTC)n Simple_repeat Simple_repeat 1 130 0 3 1154 842 345 84 34 chr12 74682270 74682851 -46574679 + L2 LINE L2 2282 2891 -528 3 1154 4179 60 4 0 chr12 74683332 74683847 -46573683 - L1_Mus1 LINE L1 -2 6565 6049 3 1154 3696 42 11 0 chr12 74683847 74684294 -46573236 + L1_Mus1 LINE L1 5599 6050 -517 3 1154 192 97 0 0 chr12 74685671 74685702 -46571828 + (CTG)n Simple_repeat Simple_repeat 2 32 0 3 1154 222 200 0 22 chr12 74685743 74685789 -46571741 + G-rich Low_complexity Low_complexity 6 50 0 3 1154 1231 68 0 14 chr12 74687750 74687960 -46569570 + (TTC)n Simple_repeat Simple_repeat 1 206 0 3 1154 369 268 41 10 chr12 74688026 74688124 -46569406 - PB1D7 SINE Alu -2 118 18 3 1154 266 324 135 14 chr12 74688289 74688430 -46569100 + MER5B DNA MER1_type 16 173 -5 3 1154 300 102 0 0 chr12 74688699 74688748 -46568782 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1154 1017 334 128 40 chr12 74689454 74691226 -46566304 + L1ME2 LINE L1 3225 5164 -982 3 1154 888 114 202 0 chr12 74691226 74691384 -46566146 - B2_Mm2 SINE B2 -3 192 3 3 1154 1017 316 118 40 chr12 74691384 74692196 -46565334 + L1ME2 LINE L1 5165 6036 -128 3 1154 228 188 0 0 chr12 74692603 74692667 -46564863 + C-rich Low_complexity Low_complexity 1 64 0 3 1154 306 231 0 25 chr12 74693385 74693465 -46564065 - ID4_ SINE ID -4 79 2 4 1154 198 0 0 0 chr12 74693567 74693589 -46563941 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1154 946 156 207 14 chr12 74693842 74694050 -46563480 + MTD LTR MaLR 165 412 -7 4 1154 192 375 50 40 chr12 74694981 74695081 -46562449 - L2b LINE L2 -35 3340 3240 4 1154 477 0 0 0 chr12 74695710 74695763 -46561767 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1154 371 176 0 183 chr12 74695773 74695877 -46561653 + MT2B LTR ERVL 173 257 -344 4 1154 959 79 0 45 chr12 74695789 74695922 -46561608 + B1_Mus2 SINE Alu 21 147 0 4 1154 236 350 85 24 chr12 74696243 74696407 -46561123 + MIR3 SINE MIR 30 203 -5 4 1154 717 12 0 0 chr12 74696772 74696854 -46560676 + (GA)n Simple_repeat Simple_repeat 2 83 0 4 1154 861 282 10 5 chr12 74698581 74698788 -46558742 + ID_B1 SINE B4 8 215 -9 4 1154 315 0 0 0 chr12 74698788 74698823 -46558707 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1154 220 338 0 0 chr12 74700123 74700203 -46557327 + (TCTG)n Simple_repeat Simple_repeat 2 81 0 4 1154 408 193 25 0 chr12 74700206 74700325 -46557205 + (TG)n Simple_repeat Simple_repeat 1 122 0 4 1154 342 0 0 0 chr12 74700359 74700397 -46557133 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1154 642 222 77 48 chr12 74700397 74700605 -46556925 - B4A SINE B4 -78 214 1 4 1154 468 322 0 14 chr12 74702514 74702659 -46554871 - B1F1 SINE Alu -6 143 1 4 1154 587 285 14 0 chr12 74702801 74702945 -46554585 - RSINE1 SINE B4 -2 163 18 4 1154 275 312 37 0 chr12 74706326 74706435 -46551095 - PB1D10 SINE Alu -2 115 3 4 1154 731 145 45 15 chr12 74706659 74706792 -46550738 + MTD LTR MaLR 19 155 -264 4 1154 899 203 117 0 chr12 74706909 74707131 -46550399 + MTD LTR MaLR 172 419 0 4 1154 313 287 97 37 chr12 74709210 74709344 -46548186 - MIR SINE MIR -28 234 93 4 1154 643 290 53 11 chr12 74709346 74709534 -46547996 + B4A SINE B4 6 201 -91 4 1154 210 239 0 0 chr12 74709964 74710010 -46547520 + T-rich Low_complexity Low_complexity 3 48 0 4 1154 782 186 7 28 chr12 74710010 74710154 -46547376 - B1_Mur1 SINE Alu 0 149 9 4 1154 495 255 20 60 chr12 74710190 74710340 -46547190 - B1F SINE Alu -5 144 1 4 1154 245 350 0 0 chr12 74710530 74710590 -46546940 - ID_B1 SINE B4 -129 95 36 4 1154 210 355 32 0 chr12 74710544 74710606 -46546924 - ID4_ SINE ID -1 82 19 4 1155 1109 120 0 0 chr12 74713049 74713207 -46544323 + B2_Mm2 SINE B2 1 158 -37 4 1155 34 0 0 0 chr12 74713207 74713241 -46544289 + AT_rich Low_complexity Low_complexity 1 34 0 4 1155 280 223 202 10 chr12 74713284 74713388 -46544142 - MIR SINE MIR -13 249 126 4 1155 376 325 39 44 chr12 74715565 74715771 -46541759 - MER46C DNA MER2_type -15 323 119 4 1155 565 259 7 7 chr12 74716147 74716291 -46541239 + B1F2 SINE Alu 4 147 -2 4 1155 849 202 82 39 chr12 74716716 74716922 -46540608 - B3 SINE B2 -1 215 1 4 1155 180 0 0 0 chr12 74717203 74717223 -46540307 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1155 245 319 0 42 chr12 74717390 74717462 -46540068 - L2c LINE L2 -9 3378 3310 4 1155 218 298 112 38 chr12 74717567 74717707 -46539823 + L2b LINE L2 3220 3357 -30 4 1155 269 94 38 0 chr12 74719273 74719326 -46538204 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 4 1155 404 35 35 0 chr12 74719339 74719396 -46538134 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 4 1155 311 344 98 0 chr12 74719396 74719518 -46538012 - RSINE1 SINE B4 -29 136 3 4 1155 324 317 28 8 chr12 74719531 74719656 -46537874 - L1MEg LINE L1 -4140 2102 2040 4 1155 324 285 70 12 chr12 74720611 74720724 -46536806 + MIRc SINE MIR 36 157 -119 4 1155 438 200 131 39 chr12 74720781 74720911 -46536619 - RSINE1 SINE B4 -4 161 20 4 1155 330 284 107 75 chr12 74721243 74721551 -46535979 + L2b LINE L2 2935 3252 -123 4 1155 216 86 0 0 chr12 74721560 74721595 -46535935 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1155 329 324 57 29 chr12 74722195 74722370 -46535160 - MER3 DNA MER1_type -25 184 5 4 1155 376 291 133 59 chr12 74724163 74724441 -46533089 - B4 SINE B4 -18 274 1 4 1155 2361 207 63 40 chr12 74725068 74725775 -46531755 - Lx9 LINE L1 -1618 6026 5263 4 1155 308 210 67 48 chr12 74725892 74725997 -46531533 + Lx9 LINE L1 6282 6388 -1256 4 1155 695 239 0 14 chr12 74726032 74726176 -46531354 - B1_Mur1 SINE Alu 0 149 8 4 1155 340 340 0 81 chr12 74726176 74726205 -46531325 - ID_B1 SINE B4 0 224 66 4 1155 4166 158 68 19 chr12 74726206 74726986 -46530544 + Lx9 LINE L1 6457 7274 -370 4 1155 853 242 77 80 chr12 74727152 74727426 -46530104 + B4 SINE B4 1 273 -19 4 1155 416 214 8 0 chr12 74727506 74727623 -46529907 + (CA)n Simple_repeat Simple_repeat 1 118 0 4 1155 379 97 16 0 chr12 74727793 74727848 -46529682 - RMER16-int LTR ERVK -2586 2820 2774 4 1155 231 189 0 0 chr12 74728309 74728362 -46529168 + (CAT)n Simple_repeat Simple_repeat 3 55 0 4 1155 534 206 37 0 chr12 74728370 74728477 -46529053 - PB1D9 SINE Alu -7 113 3 4 1155 459 138 274 8 chr12 74729388 74729505 -46528025 - B2_Mm2 SINE B2 0 195 48 4 1155 1223 88 0 0 chr12 74729555 74729714 -46527816 - B2_Mm2 SINE B2 -35 160 2 4 1155 342 67 0 0 chr12 74730101 74730146 -46527384 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1155 1124 98 98 0 chr12 74730518 74730692 -46526838 + B2_Mm2 SINE B2 1 191 -4 4 1155 193 369 15 0 chr12 74731065 74731130 -46526400 + L2a LINE L2 3357 3422 -4 4 1155 181 263 0 0 chr12 74732403 74732441 -46525089 - MER5A DNA MER1_type -149 40 3 4 1155 798 271 111 116 chr12 74734336 74735047 -46522483 - L1MC3 LINE L1 -49 7736 6976 4 1155 697 262 106 44 chr12 74735047 74735322 -46522208 - B4A SINE B4 0 292 1 4 1155 798 271 111 116 chr12 74735322 74735630 -46521900 - L1MC3 LINE L1 -810 6975 6722 4 1155 1017 130 0 7 chr12 74735639 74735786 -46521744 + B1_Mur4 SINE Alu 4 149 -1 4 1155 498 188 0 0 chr12 74735792 74735893 -46521637 + GA-rich Low_complexity Low_complexity 2 102 0 4 1155 1025 108 11 11 chr12 74735893 74736071 -46521459 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 1155 613 302 189 31 chr12 74736071 74736583 -46520947 - L1MC3 LINE L1 -1255 6787 6195 4 1155 506 269 36 66 chr12 74736622 74736789 -46520741 - RSINE1 SINE B4 0 165 4 4 1155 193 297 27 13 chr12 74738169 74738244 -46519286 + L2a LINE L2 2449 2524 -895 4 1155 256 207 138 0 chr12 74738294 74738352 -46519178 - MER58A DNA MER1_type -16 208 143 4 1155 302 250 54 54 chr12 74738923 74739016 -46518514 - MER58A DNA MER1_type -130 94 2 4 1155 189 234 27 33 chr12 74739358 74739421 -46518109 + L2a LINE L2 3094 3155 -271 4 1155 180 0 0 0 chr12 74740567 74740587 -46516943 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1155 233 360 71 7 chr12 74741575 74741715 -46515815 + MIRb SINE MIR 54 202 -66 4 1155 250 323 0 0 chr12 74742429 74742491 -46515039 - RSINE1 SINE B4 -11 154 93 4 1155 483 184 2 2 chr12 74742472 74742566 -46514964 + B1_Mm SINE Alu 37 130 -18 4 1155 240 333 24 12 chr12 74742746 74742828 -46514702 - MIRm SINE MIR -150 126 44 4 1155 2676 157 37 12 chr12 74743221 74743735 -46513795 - RLTR11A2 LTR ERVK 0 527 1 4 1155 558 0 0 0 chr12 74743749 74743811 -46513719 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4 1155 1926 71 0 0 chr12 74743825 74744065 -46513465 - L1_Mus2 LINE L1 0 6566 6327 4 1155 1852 50 0 0 chr12 74744065 74744284 -46513246 + L1_Mus2 LINE L1 6123 6341 -225 4 1155 567 231 43 32 chr12 74744335 74744523 -46513007 + L1M2 LINE L1 5029 5218 -925 4 1155 305 219 117 54 chr12 74744644 74744755 -46512775 + L1M2 LINE L1 5414 5531 -769 4 1155 260 298 0 23 chr12 74744748 74744834 -46512696 - L1MB8 LINE L1 -215 5963 5880 4 1155 379 248 112 8 chr12 74745124 74745258 -46512272 + L1M4 LINE L1 4899 5046 -1100 4 1155 926 299 20 31 chr12 74745261 74745570 -46511960 + Lx7 LINE L1 6565 6869 -604 4 1155 247 321 148 39 chr12 74746349 74746605 -46510925 - MLT1K LTR MaLR -28 567 284 4 1155 1415 259 55 6 chr12 74746736 74747097 -46510433 - MTE2b LTR MaLR 0 379 1 4 1155 203 333 97 42 chr12 74747273 74747417 -46510113 + L3 LINE CR1 4225 4376 -113 4 1155 2203 220 56 5 chr12 74747506 74747954 -46509576 + Lx5 LINE L1 6580 7050 0 4 1155 373 215 355 28 chr12 74748026 74748237 -46509293 + B4A SINE B4 1 280 -12 4 1155 216 0 0 0 chr12 74750369 74750393 -46507137 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1155 374 269 76 36 chr12 74750923 74751164 -46506366 - L1ME2 LINE L1 -134 6039 5794 4 1155 287 275 12 24 chr12 74751408 74751490 -46506040 - PB1D10 SINE Alu 0 117 37 4 1155 186 43 0 0 chr12 74751631 74751654 -46505876 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1155 575 275 130 51 chr12 74751907 74752398 -46505132 - L1ME2 LINE L1 -1425 4721 4192 4 1155 304 219 0 3 chr12 74752487 74752548 -46504982 - PB1 SINE Alu -48 69 10 4 1155 1028 48 0 165 chr12 74752719 74752895 -46504635 + B1_Mm SINE Alu 1 147 0 4 1155 186 209 0 0 chr12 74754186 74754229 -46503301 + CT-rich Low_complexity Low_complexity 2 44 0 4 1155 1193 199 19 106 chr12 74754612 74754828 -46502702 - B4A SINE B4 0 292 82 4 1155 297 0 0 0 chr12 74754828 74754861 -46502669 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1155 1193 199 19 106 chr12 74754861 74754964 -46502566 - B4A SINE B4 -211 81 1 4 1155 313 259 123 18 chr12 74756399 74756513 -46501017 + L1MC5 LINE L1 7314 7439 -522 4 1155 648 89 0 0 chr12 74756755 74756856 -46500674 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 1155 747 267 85 27 chr12 74757451 74757709 -46499821 + B4A SINE B4 1 273 -19 4 1155 306 0 0 0 chr12 74757717 74757751 -46499779 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1155 1396 294 146 36 chr12 74759078 74759908 -46497622 + Charlie1a DNA MER1_type 453 1373 -82 4 1155 240 35 0 0 chr12 74760105 74760134 -46497396 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1155 243 0 0 0 chr12 74760490 74760517 -46497013 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1155 621 40 0 0 chr12 74761004 74761080 -46496450 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 1155 426 176 176 0 chr12 74762660 74762745 -46494785 + RSINE1 SINE B4 3 102 -63 5 1155 207 303 241 43 chr12 74764230 74764392 -46493138 + MIRb SINE MIR 11 204 -64 5 1155 261 0 0 0 chr12 74766370 74766399 -46491131 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 5 1155 946 128 0 21 chr12 74766703 74766847 -46490683 + B1_Mus2 SINE Alu 1 141 -6 5 1155 419 141 0 13 chr12 74767114 74767193 -46490337 + GA-rich Low_complexity Low_complexity 5 82 0 5 1155 246 237 34 0 chr12 74767203 74767262 -46490268 + C-rich Low_complexity Low_complexity 4 64 0 5 1155 383 256 149 0 chr12 74767264 74767385 -46490145 - B1F1 SINE Alu -10 139 1 5 1155 667 274 78 0 chr12 74767385 74767457 -46490073 - ID_B1 SINE B4 -131 93 8 5 1155 1215 254 117 47 chr12 74767457 74768056 -46489474 + L1MEc LINE L1 372 1012 -5388 5 1155 627 287 132 22 chr12 74769281 74769691 -46487839 - L1MB3 LINE L1 -3 6180 5726 5 1155 3661 46 5 2 chr12 74770131 74770566 -46486964 + RLTR10C LTR ERVK 1 436 0 5 1155 1134 218 0 5 chr12 74771071 74771274 -46486256 + B3 SINE B2 1 202 -14 5 1155 306 317 16 24 chr12 74772588 74772711 -46484819 + AmnSINE1 SINE SINE 289 410 -165 5 1155 481 299 6 48 chr12 74773191 74773356 -46484174 - MER20 DNA MER1_type -58 161 4 5 1155 306 0 0 0 chr12 74773745 74773779 -46483751 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1155 590 282 62 59 chr12 74773784 74774074 -46483456 - B4A SINE B4 -1 291 1 5 1155 1113 113 216 0 chr12 74774335 74774520 -46483010 - URR1A DNA MER1_type 0 226 2 5 1155 351 274 94 0 chr12 74775626 74775732 -46481798 + PB1D10 SINE Alu 1 116 -1 5 1155 585 189 104 15 chr12 74775737 74775871 -46481659 + B1_Mur2 SINE Alu 1 146 -3 5 1155 1651 196 35 6 chr12 74777849 74778167 -46479363 - ORR1A2 LTR MaLR 0 327 1 5 1155 1029 194 117 0 chr12 74778167 74778261 -46479269 - ORR1D1 LTR MaLR -98 276 177 5 1155 360 0 0 0 chr12 74778261 74778301 -46479229 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1155 1029 194 117 0 chr12 74778301 74778453 -46479077 - ORR1D1 LTR MaLR -198 176 3 5 1155 274 305 0 12 chr12 74779901 74779984 -46477546 - B1F1 SINE Alu 0 149 68 5 1155 248 0 31 0 chr12 74781481 74781513 -46476017 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1155 1448 138 122 0 chr12 74782594 74782847 -46474683 - MTD LTR MaLR -8 411 128 5 1155 803 273 106 12 chr12 74782945 74783201 -46474329 - Lx9 LINE L1 -756 6888 6609 5 1155 720 0 0 0 chr12 74783627 74783707 -46473823 + (GAA)n Simple_repeat Simple_repeat 2 81 0 5 1155 231 114 0 0 chr12 74783818 74783862 -46473668 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1155 23 0 0 0 chr12 74784557 74784580 -46472950 + AT_rich Low_complexity Low_complexity 1 23 0 5 1155 530 275 84 0 chr12 74784585 74784727 -46472803 - B3 SINE B2 0 216 63 5 1155 769 117 175 0 chr12 74784771 74784891 -46472639 - B1_Mur2 SINE Alu -8 141 1 5 1155 354 204 43 28 chr12 74785590 74785731 -46471799 + (TA)n Simple_repeat Simple_repeat 1 143 0 5 1155 257 333 19 19 chr12 74785894 74785998 -46471532 + LTR16C LTR ERVL 294 397 -92 5 1155 605 275 112 27 chr12 74786030 74786217 -46471313 - MER2 DNA MER2_type 0 345 143 5 1155 400 259 34 25 chr12 74790136 74790255 -46467275 - PB1 SINE Alu -7 120 1 5 1155 190 333 8 70 chr12 74790547 74790676 -46466854 - MIRb SINE MIR -22 246 126 5 1155 207 100 0 0 chr12 74790833 74790863 -46466667 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 5 1155 451 265 37 15 chr12 74790952 74791086 -46466444 - B1F1 SINE Alu -12 137 1 5 1155 2195 174 34 39 chr12 74791335 74791743 -46465787 + MTD LTR MaLR 12 417 -2 5 1155 564 276 50 27 chr12 74791763 74791983 -46465547 + L1MA6 LINE L1 6039 6263 -37 5 1155 24 0 0 0 chr12 74792007 74792031 -46465499 + AT_rich Low_complexity Low_complexity 1 24 0 5 1155 573 275 90 36 chr12 74792342 74792508 -46465022 - B4A SINE B4 -116 176 2 5 1155 342 0 0 0 chr12 74793390 74793428 -46464102 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1155 426 20 0 0 chr12 74793566 74793617 -46463913 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1155 186 43 0 0 chr12 74794393 74794416 -46463114 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1155 684 234 91 35 chr12 74794422 74794621 -46462909 + B3 SINE B2 1 210 -6 5 1155 1390 55 16 11 chr12 74794618 74794802 -46462728 + B2_Mm2 SINE B2 11 195 0 5 1155 189 0 0 0 chr12 74795231 74795252 -46462278 + (C)n Simple_repeat Simple_repeat 1 21 0 5 1155 201 200 0 20 chr12 74795460 74795511 -46462019 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1155 502 356 50 17 chr12 74795780 74796183 -46461347 + L1MC LINE L1 2342 2757 -3389 5 1155 245 287 83 9 chr12 74796220 74796329 -46461201 + RSINE1 SINE B4 4 120 -45 5 1155 491 112 12 0 chr12 74796333 74796413 -46461117 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1155 448 173 0 0 chr12 74796413 74796488 -46461042 - PB1D9 SINE Alu -45 75 1 5 1155 468 0 0 0 chr12 74797310 74797362 -46460168 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1155 282 384 26 26 chr12 74797765 74797880 -46459650 - ORR1E LTR MaLR -244 115 1 5 1155 510 17 0 0 chr12 74799333 74799392 -46458138 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1155 220 301 108 0 chr12 74799831 74799922 -46457608 + B1F SINE Alu 1 98 -19 5 1155 306 130 0 0 chr12 74800241 74800287 -46457243 + Arthur1C DNA Tip100 9 54 -309 5 1155 268 263 26 0 chr12 74802459 74802535 -46454995 + ID4_ SINE ID 2 79 -4 5 1155 617 243 67 46 chr12 74802567 74802740 -46454790 + B3A SINE B2 1 180 -18 5 1155 351 0 0 0 chr12 74802740 74802779 -46454751 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1155 617 243 67 46 chr12 74802779 74802799 -46454731 + B3A SINE B2 181 198 0 5 1155 31 26 0 0 chr12 74803036 74803074 -46454456 + AT_rich Low_complexity Low_complexity 1 38 0 5 1155 1041 226 5 5 chr12 74805431 74805636 -46451894 + B3 SINE B2 5 209 -7 5 1155 299 280 0 130 chr12 74805798 74805911 -46451619 + PB1D9 SINE Alu 2 100 -20 5 1155 594 75 0 0 chr12 74805911 74805991 -46451539 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 5 1155 285 146 0 0 chr12 74806000 74806048 -46451482 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1155 242 328 0 0 chr12 74806259 74806326 -46451204 - MIR SINE MIR -36 226 160 5 1155 524 280 130 5 chr12 74807322 74807530 -46450000 + Lx8 LINE L1 7240 7473 0 5 1155 569 258 23 76 chr12 74807944 74808116 -46449414 + RSINE1 SINE B4 3 165 0 5 1155 1171 279 72 60 chr12 74808271 74808885 -46448645 - L1MA9 LINE L1 -407 5905 5285 5 1155 630 39 0 0 chr12 74810478 74810555 -46446975 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1155 704 71 10 0 chr12 74810561 74810660 -46446870 + (GAAAA)n Simple_repeat Simple_repeat 3 102 0 5 1155 242 376 21 57 chr12 74811154 74811346 -46446184 - MIRb SINE MIR -83 185 1 5 1155 191 317 128 10 chr12 74812736 74812838 -46444692 - L2a LINE L2 0 3426 3313 5 1155 226 286 143 0 chr12 74814106 74814183 -46443347 - MER20 DNA MER1_type -35 184 97 5 1155 768 219 53 0 chr12 74814344 74814495 -46443035 + RSINE1 SINE B4 3 161 -4 5 1155 27 29 0 0 chr12 74814508 74814542 -46442988 + AT_rich Low_complexity Low_complexity 1 34 0 5 1155 315 0 0 0 chr12 74814864 74814899 -46442631 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1155 378 222 0 112 chr12 74815140 74815251 -46442279 + PB1D9 SINE Alu 18 117 -3 5 1155 833 251 287 11 chr12 74816368 74816632 -46440898 - MTE2a LTR MaLR -20 359 23 5 1155 210 93 0 69 chr12 74817882 74817940 -46439590 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 5 1155 198 171 0 0 chr12 74817947 74817988 -46439542 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1155 405 0 0 0 chr12 74818016 74818061 -46439469 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1155 183 282 11 103 chr12 74818197 74818284 -46439246 - MIR SINE MIR -18 244 166 5 1155 232 211 19 19 chr12 74818300 74818353 -46439177 + GA-rich Low_complexity Low_complexity 5 57 0 5 1155 240 35 0 0 chr12 74818851 74818880 -46438650 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 5 1155 1405 109 38 39 chr12 74819851 74820096 -46437434 + ORR1B1 LTR MaLR 188 421 0 5 1155 477 0 0 0 chr12 74821264 74821317 -46436213 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1155 865 273 29 74 chr12 74823599 74823926 -46433604 + MTE2a LTR MaLR 1 288 -91 5 1155 942 199 165 140 chr12 74823926 74824283 -46433247 + ORR1D1 LTR MaLR 1 366 -8 5 1155 260 210 51 174 chr12 74824285 74824383 -46433147 + MTE2a LTR MaLR 277 362 -17 5 1155 183 372 70 9 chr12 74827962 74828076 -46429454 - L2c LINE L2 -299 3088 2968 5 1155 242 234 117 41 chr12 74828264 74828370 -46429160 - MIR3 SINE MIR -36 172 65 5 1155 561 278 102 111 chr12 74828675 74829019 -46428511 - ORR1E LTR MaLR 0 359 19 5 1155 242 367 61 0 chr12 74829033 74829131 -46428399 - L2c LINE L2 -170 3217 3114 5 1155 417 358 127 46 chr12 74829351 74829808 -46427722 - MLT1J LTR MaLR 0 512 19 5 1155 2681 208 51 18 chr12 74830078 74830697 -46426833 - Lx5 LINE L1 0 7050 6333 5 1155 250 196 0 19 chr12 74830703 74830755 -46426775 - Lx5 LINE L1 -688 6362 6312 5 1155 206 32 32 0 chr12 74831116 74831147 -46426383 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 5 1155 332 336 181 34 chr12 74831942 74832296 -46425234 - L2a LINE L2 -17 3409 3004 5 1155 414 0 0 0 chr12 74832475 74832521 -46425009 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1155 344 312 21 14 chr12 74832577 74832717 -46424813 + B1F SINE Alu 1 141 -8 6 1155 345 24 0 0 chr12 74832727 74832769 -46424761 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1155 257 333 0 0 chr12 74834613 74834679 -46422851 - tRNA-Ala-GCY_ tRNA tRNA -6 69 4 6 1155 272 151 0 19 chr12 74835164 74835218 -46422312 - MER2 DNA MER2_type -94 251 199 6 1155 263 304 120 0 chr12 74835236 74835328 -46422202 - MER2 DNA MER2_type -217 128 26 6 1155 198 303 77 16 chr12 74835406 74835549 -46421981 - L2b LINE L2 -3 3384 3233 6 1155 513 305 35 0 chr12 74835642 74835783 -46421747 - MLT1A0 LTR MaLR -2 363 218 6 1155 315 0 0 0 chr12 74835904 74835939 -46421591 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1155 562 104 10 10 chr12 74836631 74836728 -46420802 + (TCTCCC)n Simple_repeat Simple_repeat 2 98 0 6 1155 297 256 130 22 chr12 74836853 74836942 -46420588 + MLT1A1 LTR MaLR 1 99 -309 6 1155 461 284 90 0 chr12 74836942 74837076 -46420454 + B1_Mur1 SINE Alu 1 146 -3 6 1155 324 294 19 38 chr12 74837250 74837356 -46420174 + MLT1A1 LTR MaLR 305 408 0 6 1155 1176 312 85 18 chr12 74837356 74837966 -46419564 + L1MA10 LINE L1 5684 6334 0 6 1155 198 71 0 0 chr12 74839123 74839151 -46418379 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1155 264 211 0 66 chr12 74840062 74840123 -46417407 + Zaphod2 DNA Tip100 3460 3516 -8 6 1155 188 0 0 69 chr12 74841237 74841266 -46416264 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1155 290 173 0 219 chr12 74841402 74841498 -46416032 - B4A SINE B4 -4 288 214 6 1155 555 261 57 25 chr12 74841571 74841728 -46415802 - RSINE1 SINE B4 -1 164 3 6 1155 651 257 37 95 chr12 74841746 74841987 -46415543 - B4A SINE B4 -65 227 1 6 1156 781 267 24 6 chr12 74843057 74843223 -46414307 + B3A SINE B2 2 170 -28 6 1156 1103 81 0 7 chr12 74843225 74843512 -46414018 + (CA)n Simple_repeat Simple_repeat 1 284 0 6 1156 270 259 154 37 chr12 74843534 74843712 -46413818 - MER5C DNA MER1_type -108 205 7 6 1156 404 250 66 26 chr12 74846430 74846582 -46410948 + L1_Rod LINE L1 5062 5219 -628 6 1156 367 230 0 21 chr12 74846630 74846753 -46410777 + ID_B1 SINE B4 2 208 -16 6 1156 684 111 0 0 chr12 74846753 74846861 -46410669 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 6 1156 555 304 92 16 chr12 74846890 74847141 -46410389 + L1_Mm LINE L1 5352 5621 -262 6 1156 329 359 30 42 chr12 74847165 74847477 -46410053 + L1MA6 LINE L1 5712 6017 -283 6 1156 1527 58 16 0 chr12 74849256 74849445 -46408085 - B2_Mm2 SINE B2 0 195 4 6 1156 367 273 251 58 chr12 74849693 74849920 -46407610 + B4A SINE B4 16 286 -6 6 1156 420 225 0 36 chr12 74849960 74850043 -46407487 - ID4_ SINE ID -1 82 3 6 1156 409 275 26 35 chr12 74850046 74850159 -46407371 - B1F SINE Alu 0 149 38 6 1156 28 29 0 0 chr12 74852218 74852253 -46405277 + AT_rich Low_complexity Low_complexity 1 35 0 6 1156 334 281 97 32 chr12 74853000 74853093 -46404437 - B1F1 SINE Alu -19 108 10 6 1156 333 0 0 0 chr12 74853353 74853390 -46404140 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1156 414 0 0 0 chr12 74854875 74854921 -46402609 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1156 288 0 0 0 chr12 74854921 74854952 -46402578 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1156 22 0 0 0 chr12 74855020 74855042 -46402488 + AT_rich Low_complexity Low_complexity 1 22 0 6 1156 182 280 127 51 chr12 74859207 74859286 -46398244 - MIRm SINE MIR -34 242 158 6 1156 359 242 58 36 chr12 74859337 74859474 -46398056 - B1F2 SINE Alu -9 140 1 6 1156 723 95 0 0 chr12 74862715 74862820 -46394710 + (TTCC)n Simple_repeat Simple_repeat 3 107 0 6 1156 760 128 15 0 chr12 74862870 74863003 -46394527 - Lx4A LINE L1 0 7058 6924 6 1156 396 0 0 0 chr12 74863399 74863443 -46394087 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1156 267 299 109 7 chr12 74863831 74863969 -46393561 + MIRb SINE MIR 92 243 -25 6 1156 2143 120 3 58 chr12 74864149 74864494 -46393036 - ORR1A3 LTR MaLR 0 326 1 6 1156 604 194 29 58 chr12 74864599 74864736 -46392794 + B1F2 SINE Alu 2 134 -15 6 1156 303 49 0 0 chr12 74865147 74865188 -46392342 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1156 270 0 0 0 chr12 74866647 74866677 -46390853 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1156 333 0 0 0 chr12 74866717 74866754 -46390776 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1156 264 177 12 37 chr12 74866919 74867001 -46390529 + Lx7 LINE L1 7605 7684 -12 6 1156 212 86 0 28 chr12 74867567 74867603 -46389927 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 6 1156 305 363 89 6 chr12 74867603 74867772 -46389758 - HAL1-3A_ME LINE L1 -420 2438 2256 6 1156 327 309 140 54 chr12 74868498 74868625 -46388905 + MIRb SINE MIR 2 135 -133 6 1156 1175 212 38 65 chr12 74868625 74868994 -46388536 - RLTR15 LTR ERVK 0 359 1 6 1156 327 309 140 54 chr12 74868994 74869088 -46388442 + MIRb SINE MIR 136 242 -26 6 1156 461 227 0 17 chr12 74871292 74871391 -46386139 - B1F SINE Alu -23 94 3 6 1156 31 76 0 0 chr12 74871620 74871686 -46385844 + AT_rich Low_complexity Low_complexity 1 66 0 6 1156 350 229 83 25 chr12 74872148 74872269 -46385261 - MER65D LTR ERV1 -341 132 5 6 1156 834 275 207 37 chr12 74873096 74873275 -46384255 - Lx9 LINE L1 -4 7640 7395 6 1156 569 14 14 0 chr12 74873275 74873345 -46384185 + (TTAGGG)n Simple_repeat Simple_repeat 5 75 0 6 1156 834 275 207 37 chr12 74873345 74873754 -46383776 - Lx9 LINE L1 -250 7394 6952 6 1156 454 229 194 29 chr12 74873828 74874003 -46383527 + B3 SINE B2 1 204 -12 6 1156 356 154 0 0 chr12 74874192 74874244 -46383286 + G-rich Low_complexity Low_complexity 3 54 0 6 1156 198 0 0 0 chr12 74874448 74874470 -46383060 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1156 216 310 42 14 chr12 74875198 74875270 -46382260 - ID2 SINE ID -1 82 9 6 1156 442 224 45 27 chr12 74875296 74875406 -46382124 - PB1D10 SINE Alu -1 116 5 6 1156 324 0 0 0 chr12 74876303 74876339 -46381191 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 6 1156 447 280 82 87 chr12 74880018 74880202 -46377328 - MIR SINE MIR -64 198 16 6 1156 1351 152 4 35 chr12 74882996 74883227 -46374303 + URR1A DNA MER1_type 3 226 0 6 1156 525 306 0 0 chr12 74883474 74883618 -46373912 - RSINE1 SINE B4 -19 146 3 6 1156 6647 49 4 8 chr12 74883865 74884688 -46372842 - L1Md_F2 LINE L1 0 6582 5764 6 1156 492 18 0 0 chr12 74884755 74884812 -46372718 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1156 648 271 58 6 chr12 74885485 74885656 -46371874 - B3A SINE B2 -18 180 1 6 1156 2753 46 0 0 chr12 74885893 74886219 -46371311 - L1_Mus1 LINE L1 -1 6566 6241 6 1156 240 321 79 18 chr12 74886463 74886577 -46370953 + L3 LINE CR1 3946 4066 -423 6 1156 409 252 9 45 chr12 74886664 74886776 -46370754 - Tigger5 DNA MER2_type -6 2400 2293 6 1156 692 278 64 30 chr12 74886760 74886994 -46370536 - Tigger5 DNA MER2_type -2164 242 1 6 1156 353 369 72 40 chr12 74887404 74887751 -46369779 + ORR1E LTR MaLR 2 359 0 6 1156 340 314 19 0 chr12 74888539 74888644 -46368886 + MER63D DNA AcHobo 275 381 -680 6 1156 287 303 36 79 chr12 74888773 74888938 -46368592 + MIRb SINE MIR 46 203 -65 6 1156 1223 309 42 32 chr12 74889197 74889702 -46367828 + Lx9 LINE L1 6961 7470 -174 6 1156 591 275 19 0 chr12 74890509 74890669 -46366861 - RSINE1 SINE B4 -1 164 2 6 1156 253 155 17 17 chr12 74890735 74890794 -46366736 + GA-rich Low_complexity Low_complexity 1 59 0 6 1156 968 211 5 20 chr12 74890944 74891147 -46366383 + ID_B1 SINE B4 23 222 -2 6 1156 1353 147 32 0 chr12 74892825 74893043 -46364487 + URR1B DNA MER1_type 1 225 0 6 1156 345 302 45 23 chr12 74893102 74893278 -46364252 + MER5A DNA MER1_type 4 183 -6 6 1156 441 0 0 0 chr12 74893564 74893613 -46363917 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1156 465 19 0 0 chr12 74893975 74894029 -46363501 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1156 795 116 0 0 chr12 74894029 74894150 -46363380 + (TG)n Simple_repeat Simple_repeat 2 122 0 6 1156 196 307 13 26 chr12 74894226 74894303 -46363227 + L2a LINE L2 3348 3423 -3 6 1156 750 283 25 39 chr12 74895908 74896122 -46361408 + ID_B1 SINE B4 1 207 -17 6 1156 306 229 0 0 chr12 74896141 74896237 -46361293 + GA-rich Low_complexity Low_complexity 1 96 0 6 1156 504 0 0 0 chr12 74896661 74896717 -46360813 + (CTG)n Simple_repeat Simple_repeat 3 58 0 6 1156 261 57 0 0 chr12 74897099 74897134 -46360396 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 1156 181 313 59 24 chr12 74900035 74900120 -46357410 - MIR SINE MIR -102 106 19 6 1156 290 188 42 0 chr12 74901090 74901186 -46356344 + (TA)n Simple_repeat Simple_repeat 1 100 0 6 1156 193 274 12 88 chr12 74901640 74901720 -46355810 + MIR SINE MIR 107 180 -82 6 1156 331 222 0 0 chr12 74902428 74902491 -46355039 - PB1D10 SINE Alu -52 65 3 6 1156 354 138 0 0 chr12 74902804 74902862 -46354668 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1156 783 304 38 28 chr12 74902865 74903153 -46354377 - B4 SINE B4 -1 291 1 6 1156 1200 104 0 0 chr12 74904453 74904742 -46352788 + (TG)n Simple_repeat Simple_repeat 1 289 0 6 1156 561 306 128 12 chr12 74904747 74904989 -46352541 - B4 SINE B4 -22 270 1 6 1156 258 56 0 0 chr12 74905441 74905477 -46352053 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 6 1156 243 239 102 34 chr12 74905477 74905624 -46351906 - L1MEe LINE L1 -3781 1073 917 6 1156 22 56 0 0 chr12 74906526 74906562 -46350968 + AT_rich Low_complexity Low_complexity 1 36 0 6 1156 210 143 0 0 chr12 74906918 74906953 -46350577 + (GAA)n Simple_repeat Simple_repeat 2 36 0 6 1156 423 365 97 11 chr12 74907465 74907836 -46349694 - MLT1H LTR MaLR -18 531 129 7 1156 465 315 42 7 chr12 74908931 74909075 -46348455 - RSINE1 SINE B4 -16 149 1 7 1156 682 287 88 96 chr12 74909683 74909970 -46347560 + MLT1B LTR MaLR 31 329 -61 7 1156 308 269 26 0 chr12 74909970 74910048 -46347482 + ID4 SINE ID 1 80 -3 7 1156 682 287 88 96 chr12 74910048 74910123 -46347407 + MLT1B LTR MaLR 330 390 0 7 1156 817 169 4 8 chr12 74910175 74910430 -46347100 + (TG)n Simple_repeat Simple_repeat 1 253 0 7 1156 486 61 0 0 chr12 74912479 74912545 -46344985 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1156 275 271 32 63 chr12 74913087 74913213 -46344317 + MLT1B LTR MaLR 389 510 -2 7 1156 21 0 0 0 chr12 74913544 74913565 -46343965 + AT_rich Low_complexity Low_complexity 1 21 0 7 1156 601 260 101 31 chr12 74914954 74915212 -46342318 - B4 SINE B4 -16 276 1 7 1156 3694 93 62 20 chr12 74915221 74915771 -46341759 + Lx2 LINE L1 6420 6992 -5 7 1156 907 75 15 0 chr12 74915771 74915904 -46341626 + (GAGAA)n Simple_repeat Simple_repeat 4 138 0 7 1156 354 194 16 0 chr12 74916326 74916388 -46341142 + ID4 SINE ID 1 63 -20 7 1156 1252 224 77 37 chr12 74916404 74916779 -46340751 - MER90a LTR ERV1 -145 469 80 7 1156 252 368 0 42 chr12 74917365 74917507 -46340023 - MLT1D LTR MaLR -167 338 203 7 1156 277 310 0 0 chr12 74917510 74917610 -46339920 + (CA)n Simple_repeat Simple_repeat 1 100 0 7 1156 210 216 0 0 chr12 74917635 74917709 -46339821 + CT-rich Low_complexity Low_complexity 1 74 0 7 1156 200 208 0 10 chr12 74917761 74917858 -46339672 + CT-rich Low_complexity Low_complexity 1 96 0 7 1156 608 299 59 0 chr12 74917976 74918180 -46339350 - MLT1D LTR MaLR -275 230 15 7 1156 343 253 13 0 chr12 74918975 74919054 -46338476 - ID4_ SINE ID 0 83 4 7 1156 207 314 71 0 chr12 74919427 74919572 -46337958 - L2c LINE L2 -251 3136 2981 7 1156 419 159 0 22 chr12 74920107 74920197 -46337333 + CT-rich Low_complexity Low_complexity 3 90 0 7 1156 450 215 0 0 chr12 74920625 74920760 -46336770 + (CA)n Simple_repeat Simple_repeat 2 136 0 7 1156 274 290 0 14 chr12 74921469 74921539 -46335991 + GA-rich Low_complexity Low_complexity 5 73 0 7 1156 414 95 40 0 chr12 74921929 74922003 -46335527 - L1Md_F2 LINE L1 0 6582 6506 7 1156 483 311 30 8 chr12 74922278 74922411 -46335119 + RSINE1 SINE B4 1 136 -29 7 1156 261 0 0 0 chr12 74922414 74922443 -46335087 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1156 278 265 105 88 chr12 74922478 74922830 -46334700 - L1M5 LINE L1 -436 5688 5331 7 1156 311 332 53 24 chr12 74924021 74924268 -46333262 - L1MC4a LINE L1 -1957 5925 5672 7 1156 206 0 0 65 chr12 74924380 74924411 -46333119 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1156 377 232 61 0 chr12 74924421 74924520 -46333010 - L1MC4a LINE L1 -2424 5458 5354 7 1156 351 0 0 0 chr12 74924609 74924648 -46332882 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1156 23 0 0 0 chr12 74924885 74924908 -46332622 + AT_rich Low_complexity Low_complexity 1 23 0 7 1156 253 309 121 32 chr12 74924973 74925130 -46332400 + L1MEg1 LINE L1 659 783 -5452 7 1156 261 355 9 44 chr12 74925302 74925440 -46332090 + MIR SINE MIR 12 146 -62 7 1156 590 317 123 35 chr12 74925441 74925596 -46331934 + MER57E1 LTR ERV1 1 173 -199 7 1156 1020 234 9 0 chr12 74925596 74925810 -46331720 - B3 SINE B2 0 216 1 7 1156 590 317 123 35 chr12 74925810 74925994 -46331536 + MER57E1 LTR ERV1 174 369 -3 7 1156 333 68 0 0 chr12 74926314 74926358 -46331172 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 1156 369 324 43 7 chr12 74926378 74926518 -46331012 + MLT1L LTR MaLR 127 271 -339 7 1156 336 305 32 0 chr12 74927162 74927257 -46330273 + ID_B1 SINE B4 20 117 -107 7 1156 259 264 10 90 chr12 74927262 74927362 -46330168 + PB1D10 SINE Alu 13 104 -13 7 1156 555 29 0 0 chr12 74927372 74927441 -46330089 + (TTTTG)n Simple_repeat Simple_repeat 1 69 0 7 1156 1048 76 0 0 chr12 74927441 74927572 -46329958 - B1_Mus1 SINE Alu -13 135 5 7 1156 3682 153 43 22 chr12 74927984 74928654 -46328876 - Lx5 LINE L1 -438 6612 5929 7 1156 2407 174 12 10 chr12 74928651 74929062 -46328468 + Lx5 LINE L1 6562 6973 -77 7 1156 3848 54 19 0 chr12 74929205 74929671 -46327859 + MT2C_Mm LTR ERVL 1 475 0 7 1156 710 204 13 13 chr12 74929769 74929918 -46327612 + B1_Mur2 SINE Alu 1 149 0 7 1156 246 95 0 0 chr12 74929918 74929960 -46327570 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1156 456 195 0 0 chr12 74930203 74930357 -46327173 + (TG)n Simple_repeat Simple_repeat 2 155 0 7 1156 23 0 0 0 chr12 74930501 74930524 -46327006 + AT_rich Low_complexity Low_complexity 1 23 0 7 1156 279 0 0 0 chr12 74930524 74930555 -46326975 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1156 642 281 7 0 chr12 74930608 74930754 -46326776 - RSINE1 SINE B4 -17 148 2 7 1156 205 200 0 0 chr12 74930921 74930961 -46326569 + A-rich Low_complexity Low_complexity 3 42 0 7 1156 270 353 62 16 chr12 74933568 74933761 -46323769 + MER97c DNA MER1_type? 348 549 -541 7 1156 264 226 29 10 chr12 74933784 74933887 -46323643 + MER97c DNA MER1_type? 644 748 -342 7 1156 378 0 0 0 chr12 74933982 74934024 -46323506 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1156 306 294 0 60 chr12 74934151 74934267 -46323263 - PB1D10 SINE Alu -8 109 1 7 1156 697 191 106 53 chr12 74934519 74934707 -46322823 - B3A SINE B2 0 198 1 7 1156 281 82 20 0 chr12 74934825 74934874 -46322656 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 7 1156 635 199 7 66 chr12 74935091 74935242 -46322288 + B1_Mur1 SINE Alu 1 142 -7 7 1156 560 216 95 0 chr12 74935514 74935630 -46321900 + RSINE1 SINE B4 8 134 -31 7 1156 315 0 0 0 chr12 74935656 74935691 -46321839 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1156 285 257 0 28 chr12 74935795 74935867 -46321663 + B1_Mus2 SINE Alu 1 70 -77 7 1156 401 331 67 42 chr12 74937258 74937570 -46319960 - MLT2C1 LTR ERVL -65 332 13 7 1156 475 256 132 0 chr12 74938555 74938676 -46318854 + ID_B1 SINE B4 87 223 -1 7 1156 320 327 59 41 chr12 74939847 74940016 -46317514 + MLT1G3 LTR MaLR 68 239 -356 7 1156 933 178 58 12 chr12 74940467 74940638 -46316892 - B3 SINE B2 -5 211 33 7 1156 385 242 73 36 chr12 74941192 74941329 -46316201 - RSINE1 SINE B4 -6 159 18 7 1156 213 39 0 0 chr12 74941528 74941554 -46315976 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1156 3663 125 56 29 chr12 74941904 74942497 -46315033 + RMER19C LTR ERVK 1 609 -2 7 1156 876 320 4 32 chr12 74942654 74942935 -46314595 + B4A SINE B4 1 273 -19 7 1156 288 0 0 0 chr12 74943453 74943485 -46314045 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1156 294 29 0 0 chr12 74943756 74943791 -46313739 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1156 387 0 0 0 chr12 74943791 74943833 -46313697 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1156 353 245 35 78 chr12 74943840 74943955 -46313575 + PB1D9 SINE Alu 3 112 -8 7 1156 1060 198 25 0 chr12 74944187 74944389 -46313141 + B3 SINE B2 3 209 -7 7 1156 376 265 157 29 chr12 74944648 74944788 -46312742 - RSINE1 SINE B4 -5 160 3 7 1156 618 260 134 122 chr12 74944869 74945272 -46312258 + MLT2D LTR ERVL 6 413 -1 7 1156 528 325 0 24 chr12 74945371 74945538 -46311992 + RSINE1 SINE B4 2 164 -1 7 1156 450 0 0 0 chr12 74945538 74945588 -46311942 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 7 1156 1422 227 99 26 chr12 74945714 74946066 -46311464 + MTE2a LTR MaLR 1 378 -1 7 1156 265 224 0 0 chr12 74946115 74946173 -46311357 - MLT1I LTR MaLR -2 409 352 7 1156 235 359 19 0 chr12 74946289 74946395 -46311135 - LTR33 LTR ERVL -8 507 400 7 1156 235 180 0 20 chr12 74946955 74947006 -46310524 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1156 387 0 0 0 chr12 74947467 74947510 -46310020 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1156 351 0 0 0 chr12 74947510 74947548 -46309982 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 1156 833 252 78 6 chr12 74947662 74947971 -46309559 - ORR1E LTR MaLR -20 359 5 7 1156 336 317 52 52 chr12 74951673 74951883 -46305647 + LTR33 LTR ERVL 292 501 -14 7 1156 380 228 9 98 chr12 74952237 74952349 -46305181 + PB1D10 SINE Alu 15 116 -1 7 1156 408 325 13 7 chr12 74952839 74953007 -46304523 - B4 SINE B4 -95 197 21 7 1156 489 123 12 0 chr12 74953568 74953649 -46303881 - BC1_Mm scRNA scRNA -70 82 1 7 1156 232 256 37 37 chr12 74953680 74953761 -46303769 - Lx8 LINE L1 -2 7471 7391 7 1156 1724 182 122 11 chr12 74953981 74954358 -46303172 - MTD LTR MaLR 0 419 1 7 1156 1188 155 92 0 chr12 74954923 74955129 -46302401 + URR1A DNA MER1_type 2 226 0 7 1156 271 224 108 36 chr12 74955648 74955759 -46301771 + Lx7 LINE L1 7578 7696 0 7 1156 269 338 126 42 chr12 74956130 74956297 -46301233 + MLT1J LTR MaLR 119 299 -213 7 1156 830 211 93 0 chr12 74957165 74957359 -46300171 - B3 SINE B2 -4 212 1 7 1156 835 212 7 0 chr12 74957901 74958047 -46299483 - B1_Mus2 SINE Alu 0 147 1 7 1156 467 126 12 7 chr12 74958075 74958159 -46299371 - B1_Mur3 SINE Alu -10 139 25 7 1156 3330 192 146 23 chr12 74959153 74959334 -46298196 + Lx7 LINE L1 6554 6768 -928 7 1156 270 0 0 0 chr12 74959334 74959364 -46298166 + (TAA)n Simple_repeat Simple_repeat 3 32 0 7 1156 3330 206 154 23 chr12 74959364 74960072 -46297458 + Lx7 LINE L1 6769 7678 -18 7 1156 1043 264 32 78 chr12 74960175 74960545 -46296985 + ORR1D2 LTR MaLR 30 370 0 7 1156 562 227 22 15 chr12 74961903 74962037 -46295493 - ID_B1 SINE B4 -1 223 89 7 1156 831 178 0 0 chr12 74962360 74962495 -46295035 - B1_Mus2 SINE Alu -12 135 1 7 1156 1136 218 54 48 chr12 74962497 74962810 -46294720 + MTD LTR MaLR 105 419 0 7 1156 364 37 37 0 chr12 74965343 74965397 -46292133 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1156 388 283 0 0 chr12 74965459 74965558 -46291972 - MLT1C LTR MaLR -7 460 362 7 1156 321 289 39 107 chr12 74965637 74965870 -46291660 - MLT1C LTR MaLR -285 220 4 7 1156 345 250 0 50 chr12 74966147 74966248 -46291282 + ID_B1 SINE B4 125 220 -4 8 1156 682 221 23 0 chr12 74967328 74967459 -46290071 - B3 SINE B2 -82 134 1 8 1156 22 0 0 0 chr12 74967772 74967794 -46289736 + AT_rich Low_complexity Low_complexity 1 22 0 8 1156 256 308 33 0 chr12 74968335 74968426 -46289104 - PB1D7 SINE Alu -7 113 20 8 1156 297 211 104 13 chr12 74968873 74968950 -46288580 - PB1D7 SINE Alu 0 120 37 8 1156 333 0 0 0 chr12 74969442 74969479 -46288051 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1156 2254 117 9 6 chr12 74970413 74970739 -46286791 - ORR1A2 LTR MaLR 0 327 1 8 1156 1203 286 66 21 chr12 74971129 74971615 -46285915 + L1MC3 LINE L1 5751 6258 -1527 8 1156 676 220 96 30 chr12 74971672 74971869 -46285661 + L1MC3 LINE L1 6645 6854 -931 8 1156 435 292 102 10 chr12 74972094 74972291 -46285239 + L1ME3A LINE L1 5592 5806 -367 8 1156 425 245 62 42 chr12 74972365 74972528 -46285002 - MTEa LTR MaLR 0 379 207 8 1156 614 228 119 52 chr12 74972987 74973181 -46284349 - MTEa LTR MaLR -158 221 15 8 144 382 278 100 64 chr12 74973181 74973431 -46284099 + L1ME3A LINE L1 5907 6165 -8 8 1157 198 348 43 0 chr12 74973435 74973527 -46284003 + L2 LINE L2 1812 1907 -1512 8 1157 446 328 137 19 chr12 74973679 74974095 -46283435 + L2 LINE L2 2272 2736 -683 8 1157 279 79 0 0 chr12 74974483 74974521 -46283009 + (TATG)n Simple_repeat Simple_repeat 2 39 0 8 1157 23 33 0 0 chr12 74975915 74975945 -46281585 + AT_rich Low_complexity Low_complexity 1 30 0 8 1157 200 167 0 20 chr12 74976052 74976101 -46281429 + A-rich Low_complexity Low_complexity 4 51 0 8 1157 360 0 0 0 chr12 74976271 74976311 -46281219 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1157 283 200 21 43 chr12 74976853 74976926 -46280604 + (TA)n Simple_repeat Simple_repeat 1 72 0 8 1157 234 0 0 0 chr12 74976926 74976952 -46280578 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1157 283 200 21 43 chr12 74976952 74976972 -46280558 + (TA)n Simple_repeat Simple_repeat 1 20 0 8 1157 799 281 22 17 chr12 74976974 74977277 -46280253 - L1MA6 LINE L1 -362 5938 5551 8 1157 1114 258 62 54 chr12 74977277 74977629 -46279901 - ORR1D2 LTR MaLR 0 370 16 8 1157 216 200 0 0 chr12 74977660 74977705 -46279825 + CT-rich Low_complexity Low_complexity 3 47 0 8 1157 392 267 37 93 chr12 74977705 74977866 -46279664 - L1_Mur3 LINE L1 -386 5497 5346 8 1157 239 300 12 59 chr12 74977964 74978049 -46279481 + ID4 SINE ID 2 82 -1 8 1157 383 275 29 51 chr12 74978463 74978601 -46278929 + ID_B1 SINE B4 79 213 -11 8 1157 198 0 0 0 chr12 74978602 74978624 -46278906 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1157 226 156 0 22 chr12 74979112 74979158 -46278372 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 8 1157 441 252 16 25 chr12 74979390 74979512 -46278018 + ID_B1 SINE B4 76 196 -28 8 1157 5431 35 0 0 chr12 74979550 74980230 -46277300 + L1Md_T LINE L1 5955 6582 0 8 1157 243 0 0 0 chr12 74980476 74980503 -46277027 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1157 511 161 34 0 chr12 74980503 74980615 -46276915 + (CATATA)n Simple_repeat Simple_repeat 1 116 0 8 1157 411 56 0 0 chr12 74981148 74981202 -46276328 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1157 394 292 0 26 chr12 74981969 74982085 -46275445 + PB1D10 SINE Alu 5 117 0 8 1157 490 207 62 18 chr12 74982162 74982275 -46275255 - PB1D9 SINE Alu -1 119 2 8 1157 214 29 28 28 chr12 74982275 74982311 -46275219 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1157 273 57 0 0 chr12 74982311 74982346 -46275184 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 8 1157 2197 133 108 8 chr12 74982833 74983212 -46274318 - MTC LTR MaLR 0 421 5 8 1157 270 0 0 0 chr12 74983435 74983465 -46274065 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1157 221 163 0 20 chr12 74983503 74983553 -46273977 + CT-rich Low_complexity Low_complexity 1 49 0 8 1157 730 183 189 58 chr12 74984019 74984210 -46273320 + B3 SINE B2 1 216 0 8 1157 197 200 25 0 chr12 74985207 74985247 -46272283 - L2c LINE L2 -13 3374 3334 8 1157 184 286 20 0 chr12 74985215 74985264 -46272266 - MIRm SINE MIR -20 256 207 8 1157 920 281 54 4 chr12 74985505 74985766 -46271764 + B4A SINE B4 5 278 -14 8 1157 516 93 0 0 chr12 74985770 74985845 -46271685 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 1157 403 357 53 20 chr12 74985892 74986195 -46271335 - LTR33A_ LTR ERVL -81 450 138 8 1157 374 295 7 85 chr12 74986346 74986487 -46271043 + ORR1E LTR MaLR 1 130 -229 8 1157 245 0 89 0 chr12 74986571 74986616 -46270914 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 8 1157 245 219 31 0 chr12 74986626 74986690 -46270840 + ORR1E LTR MaLR 288 353 -26 8 1157 315 0 0 0 chr12 74987048 74987083 -46270447 + (TCCCC)n Simple_repeat Simple_repeat 5 39 0 8 1157 925 259 100 15 chr12 74987084 74987354 -46270176 - Lx6 LINE L1 -136 7324 7032 8 1157 221 353 105 6 chr12 74987667 74987838 -46269692 + L2c LINE L2 3136 3323 -64 8 1157 390 372 236 10 chr12 74988505 74988794 -46268736 - MER47B DNA MER2_type -5 413 60 8 1157 1077 216 5 14 chr12 74988812 74989028 -46268502 - B3 SINE B2 0 216 3 8 1157 1255 305 92 102 chr12 74989312 74990159 -46267371 - MER21B LTR ERV1 -12 851 13 8 1157 22 0 0 0 chr12 74990373 74990395 -46267135 + AT_rich Low_complexity Low_complexity 1 22 0 8 1157 360 0 0 0 chr12 74990455 74990495 -46267035 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1157 213 39 0 0 chr12 74990856 74990882 -46266648 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1157 327 364 66 28 chr12 74991028 74991240 -46266290 - LTR16A LTR ERVL -6 445 226 8 1157 986 299 37 65 chr12 74991646 74992078 -46265452 + MER106B DNA MER1_type 4 423 -636 8 1157 479 269 28 67 chr12 74992040 74992219 -46265311 + ID_B1 SINE B4 53 224 0 8 1157 21 36 0 0 chr12 74992394 74992422 -46265108 + AT_rich Low_complexity Low_complexity 1 28 0 8 1157 286 333 0 0 chr12 74992860 74992971 -46264559 + PB1D10 SINE Alu 1 111 -6 8 1157 302 208 245 0 chr12 74993804 74993910 -46263620 + B1F SINE Alu 18 149 0 8 1157 22 0 0 0 chr12 74993910 74993932 -46263598 + AT_rich Low_complexity Low_complexity 1 22 0 8 1157 234 264 28 0 chr12 74994913 74994985 -46262545 - MIR3 SINE MIR -31 177 104 8 1157 231 203 95 68 chr12 74995632 74995706 -46261824 - L1ME2 LINE L1 -9 6155 6080 8 1157 260 183 24 0 chr12 74996970 74997052 -46260478 + (CAGAGA)n Simple_repeat Simple_repeat 2 85 0 8 1157 1169 188 29 0 chr12 74997328 74997535 -46259995 + B3 SINE B2 4 216 0 8 1157 418 336 15 0 chr12 74998010 74998141 -46259389 + ID_B1 SINE B4 85 217 -7 8 1157 1134 272 88 62 chr12 74998298 74998800 -46258730 + Tigger2b DNA MER2_type 9 523 -203 8 1157 609 278 70 94 chr12 74998802 74999100 -46258430 + B4 SINE B4 2 292 0 8 1157 30 0 0 0 chr12 74999129 74999159 -46258371 + AT_rich Low_complexity Low_complexity 1 30 0 8 1157 1114 88 0 7 chr12 75000059 75000208 -46257322 - B1_Mus1 SINE Alu 0 148 1 1 1157 845 280 91 27 chr12 75000495 75001090 -46256440 - L1MCa LINE L1 -1262 5302 4670 2 1157 867 156 0 0 chr12 75001112 75001291 -46256239 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1157 337 209 9 149 chr12 75001367 75001474 -46256056 - RLTR31A_Mm LTR ERVK -143 441 350 4 1157 522 98 0 0 chr12 75001477 75001559 -46255971 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1157 812 257 95 21 chr12 75001575 75001621 -46255909 - B4A SINE B4 -16 276 224 6 1157 1283 69 6 0 chr12 75001621 75001796 -46255734 + (TCTA)n Simple_repeat Simple_repeat 1 176 0 7 1157 812 257 95 21 chr12 75001796 75001991 -46255539 - B4A SINE B4 -69 223 17 6 1157 864 128 186 36 chr12 75001993 75002187 -46255343 - URR1B DNA MER1_type -1 224 2 8 1157 252 0 0 0 chr12 75002221 75002249 -46255281 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1157 813 257 118 93 chr12 75002254 75003040 -46254490 - L1MCa LINE L1 -4389 2362 1557 2 1157 351 0 0 0 chr12 75003432 75003471 -46254059 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1157 396 0 0 0 chr12 75003472 75003516 -46254014 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1157 691 239 98 84 chr12 75003541 75003815 -46253715 - B4A SINE B4 -14 278 1 1 1157 376 291 67 17 chr12 75003937 75004175 -46253355 - L1MCa LINE L1 -5178 867 618 2 1157 2077 139 123 0 chr12 75004912 75005287 -46252243 + MTC LTR MaLR 1 421 0 1 1157 241 279 128 7 chr12 75005288 75005429 -46252101 - L1MCa LINE L1 -6313 438 281 2 1157 417 39 0 0 chr12 75005437 75005488 -46252042 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1157 233 288 106 0 chr12 75005503 75005569 -46251961 - ID4 SINE ID -7 76 4 1 1157 387 264 106 16 chr12 75005649 75005772 -46251758 + RSINE1 SINE B4 4 137 -28 1 1157 243 293 0 0 chr12 75005951 75006009 -46251521 + GA-rich Low_complexity Low_complexity 4 61 0 1 1157 202 196 43 0 chr12 75006414 75006460 -46251070 + L3 LINE CR1 1387 1434 -3055 1 1157 432 281 89 0 chr12 75006970 75007116 -46250414 - MIR SINE MIR -9 253 95 1 1157 545 160 9 0 chr12 75007191 75007297 -46250233 + (TA)n Simple_repeat Simple_repeat 2 108 0 2 1157 321 217 0 0 chr12 75007450 75007510 -46250020 - ID4_ SINE ID -20 63 4 2 1157 342 0 0 0 chr12 75007770 75007808 -46249722 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1157 22 0 0 0 chr12 75008859 75008881 -46248649 + GC_rich Low_complexity Low_complexity 1 22 0 2 1157 21 0 0 0 chr12 75009230 75009251 -46248279 + GC_rich Low_complexity Low_complexity 1 21 0 2 1157 189 0 0 0 chr12 75009343 75009364 -46248166 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1157 180 176 0 0 chr12 75011593 75011627 -46245903 + MIRb SINE MIR 190 223 -45 2 1157 399 240 90 34 chr12 75013052 75013229 -46244301 - L1MB2 LINE L1 -92 6079 5893 2 1157 195 42 0 0 chr12 75014074 75014098 -46243432 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1157 1001 267 105 19 chr12 75015468 75015735 -46241795 - B4 SINE B4 -2 290 1 2 1157 382 214 9 117 chr12 75015932 75016043 -46241487 + MT2B LTR ERVL 159 257 -344 3 1157 728 163 44 15 chr12 75015948 75016085 -46241445 + B1_Mur2 SINE Alu 9 149 0 3 1157 237 274 0 19 chr12 75016087 75016139 -46241391 + MIR SINE MIR 41 91 -171 3 1157 502 233 34 8 chr12 75016421 75016538 -46240992 + PB1D7 SINE Alu 1 120 0 3 1157 270 364 139 0 chr12 75017412 75017577 -46239953 - MER117 DNA MER1_type -6 191 4 3 1157 766 282 56 39 chr12 75017622 75017906 -46239624 + B4 SINE B4 4 292 0 3 1157 329 310 46 8 chr12 75018600 75018730 -46238800 - L1M5 LINE L1 -475 5649 5515 3 1157 819 225 104 5 chr12 75018740 75018932 -46238598 - B3 SINE B2 -5 211 1 3 1157 21 0 0 0 chr12 75019495 75019516 -46238014 + AT_rich Low_complexity Low_complexity 1 21 0 3 1157 254 86 0 0 chr12 75019563 75019598 -46237932 - Lx2B LINE L1 -512 6488 6454 3 1157 1048 105 12 0 chr12 75019600 75019771 -46237759 + Lx2B LINE L1 6490 6662 -338 3 1157 303 143 0 0 chr12 75019767 75019823 -46237707 + RMER1B Other Other 1008 1063 -3 4 1157 269 267 33 0 chr12 75020120 75020180 -46237350 + B1F SINE Alu 14 75 -74 4 1157 364 276 91 11 chr12 75020431 75020519 -46237011 + PB1D7 SINE Alu 3 97 -23 4 1157 1007 206 55 5 chr12 75020600 75020800 -46236730 + B3 SINE B2 3 212 -4 4 1157 22 35 0 0 chr12 75021019 75021048 -46236482 + AT_rich Low_complexity Low_complexity 1 29 0 4 1157 1281 95 0 0 chr12 75021104 75021273 -46236257 + B2_Mm2 SINE B2 1 169 -26 4 1157 25 51 0 0 chr12 75021339 75021378 -46236152 + AT_rich Low_complexity Low_complexity 1 39 0 4 1157 229 274 75 117 chr12 75021944 75022064 -46235466 + MER2B DNA MER2_type 221 335 -1 4 1157 767 191 173 11 chr12 75022877 75023062 -46234468 - B3 SINE B2 0 216 2 4 1157 306 203 57 55 chr12 75023320 75023435 -46234095 - PB1 SINE Alu -7 142 1 4 1157 519 60 0 0 chr12 75023465 75023532 -46233998 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1157 323 224 333 9 chr12 75023544 75023652 -46233878 - B3 SINE B2 -73 143 1 5 1157 282 116 0 0 chr12 75023668 75023711 -46233819 + (TGG)n Simple_repeat Simple_repeat 1 43 0 5 1157 536 210 129 0 chr12 75023750 75023874 -46233656 - B1_Mur1 SINE Alu -9 140 1 5 1157 956 92 184 0 chr12 75024078 75024241 -46233289 - B2_Mm2 SINE B2 -2 193 1 5 1157 22 35 0 0 chr12 75024254 75024283 -46233247 + AT_rich Low_complexity Low_complexity 1 29 0 5 1157 583 283 252 13 chr12 75024449 75024682 -46232848 + B4A SINE B4 3 291 -1 5 1157 380 214 119 55 chr12 75024766 75024875 -46232655 + PB1D10 SINE Alu 12 127 0 5 1157 574 226 56 14 chr12 75024966 75025131 -46232399 - B3A SINE B2 -42 174 2 5 1157 664 229 23 0 chr12 75025523 75025654 -46231876 + B1_Mur1 SINE Alu 2 135 -14 5 1157 359 262 189 30 chr12 75026058 75026227 -46231303 - RMER30 DNA MER1_type -2 200 5 6 1157 737 258 19 99 chr12 75027829 75028040 -46229490 - B3A SINE B2 -22 194 1 6 1157 714 218 178 0 chr12 75028077 75028251 -46229279 - B3 SINE B2 -7 209 5 6 1157 354 205 0 0 chr12 75028576 75028654 -46228876 + CT-rich Low_complexity Low_complexity 6 83 0 6 1157 610 226 9 0 chr12 75028671 75028786 -46228744 - B1_Mur1 SINE Alu -15 134 19 6 1157 270 302 75 85 chr12 75029683 75029789 -46227741 + MT2B2 LTR ERVL 55 158 -426 6 1157 832 208 7 0 chr12 75029789 75029933 -46227597 + B1_Mur1 SINE Alu 3 147 -2 6 1157 487 209 311 24 chr12 75029942 75030109 -46227421 + B3 SINE B2 2 216 0 6 1157 22 35 0 0 chr12 75030171 75030200 -46227330 + AT_rich Low_complexity Low_complexity 1 29 0 6 1157 837 200 14 7 chr12 75030567 75030713 -46226817 - B1_Mur1 SINE Alu -1 148 2 6 1157 262 289 0 24 chr12 75030948 75031033 -46226497 - ID4 SINE ID 0 83 1 7 1157 374 268 72 0 chr12 75031055 75031152 -46226378 - PB1D10 SINE Alu -13 104 1 7 1157 400 279 80 7 chr12 75031831 75031968 -46225562 + B1F2 SINE Alu 3 149 0 7 1157 888 250 24 14 chr12 75031999 75032210 -46225320 + B3 SINE B2 1 213 -3 7 1157 21 0 0 0 chr12 75032362 75032383 -46225147 + AT_rich Low_complexity Low_complexity 1 21 0 7 1157 1286 86 11 6 chr12 75032388 75032563 -46224967 - B2_Mm2 SINE B2 -18 177 2 7 1157 270 81 0 0 chr12 75032767 75032804 -46224726 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1157 242 316 118 65 chr12 75032804 75032901 -46224629 - B3 SINE B2 -11 187 86 7 1157 994 208 49 5 chr12 75032901 75033104 -46224426 - B3 SINE B2 -4 212 1 7 1157 242 326 123 71 chr12 75033104 75033126 -46224404 - B3 SINE B2 -131 85 67 7 1157 243 0 0 0 chr12 75033126 75033153 -46224377 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1157 242 326 123 71 chr12 75033153 75033207 -46224323 - B3 SINE B2 -150 66 2 7 1157 23 33 0 0 chr12 75033473 75033503 -46224027 + AT_rich Low_complexity Low_complexity 1 30 0 8 1157 286 294 0 0 chr12 75033667 75033735 -46223795 + PB1D10 SINE Alu 10 77 -40 8 1157 1180 68 0 0 chr12 75034202 75034349 -46223181 + B1_Mus2 SINE Alu 1 147 0 8 1157 252 299 171 76 chr12 75034631 75034736 -46222794 + PB1D10 SINE Alu 3 117 0 8 1157 556 237 35 0 chr12 75035181 75035295 -46222235 - B1_Mur4 SINE Alu 0 150 33 8 1157 21 0 0 0 chr12 75037009 75037030 -46220500 + AT_rich Low_complexity Low_complexity 1 21 0 8 1157 1412 59 0 51 chr12 75037310 75037506 -46220024 + B2_Mm2 SINE B2 1 186 -9 8 1157 21 0 0 0 chr12 75037506 75037527 -46220003 + AT_rich Low_complexity Low_complexity 1 21 0 8 1157 22 35 0 0 chr12 75038335 75038364 -46219166 + AT_rich Low_complexity Low_complexity 1 29 0 8 1157 712 144 11 67 chr12 75038394 75038563 -46218967 + B1_Mus2 SINE Alu 1 149 0 8 1157 808 172 0 52 chr12 75038871 75039024 -46218506 + B1_Mus1 SINE Alu 3 147 -1 9 1157 333 199 203 11 chr12 75039389 75039499 -46218031 - B1_Mur1 SINE Alu -20 129 2 9 1157 219 309 108 9 chr12 75039776 75039887 -46217643 + L2c LINE L2 3220 3341 -46 9 1157 1235 27 0 7 chr12 75042179 75042326 -46215204 + B1_Mus2 SINE Alu 2 147 0 9 1157 735 208 0 46 chr12 75042439 75042590 -46214940 - B1_Mur1 SINE Alu 0 149 6 9 1157 368 243 25 6 chr12 75044854 75044943 -46212587 - B1F SINE Alu -7 142 18 9 1157 590 235 142 37 chr12 75045389 75045579 -46211951 + B3 SINE B2 1 210 -6 9 1157 316 280 69 46 chr12 75046115 75046246 -46211284 + B4A SINE B4 60 193 -99 9 1157 691 136 23 60 chr12 75046165 75046298 -46211232 + B1_Mur1 SINE Alu 21 148 -1 9 1157 207 140 0 95 chr12 75046716 75046779 -46210751 + T-rich Low_complexity Low_complexity 1 57 0 9 1157 233 298 48 0 chr12 75048693 75048777 -46208753 + B1F1 SINE Alu 34 121 -28 1 1157 243 284 26 26 chr12 75048861 75048937 -46208593 - ID4 SINE ID -6 77 2 1 1157 412 242 13 0 chr12 75051184 75051290 -46206240 + PB1D7 SINE Alu 11 118 -2 1 1157 225 0 0 0 chr12 75051290 75051315 -46206215 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1157 294 115 0 19 chr12 75051931 75051984 -46205546 + LSU-rRNA_Hsa rRNA rRNA 4202 4253 -782 1 1157 250 163 0 20 chr12 75052064 75052114 -46205416 - RLTR19-int LTR ERVK -2564 3573 3525 1 1157 295 225 0 48 chr12 75052285 75052369 -46205161 - RLTR19-int LTR ERVK -2864 3273 3194 1 1157 463 158 32 5 chr12 75052412 75052528 -46205002 - RLTR19-int LTR ERVK -2947 3190 3094 1 1157 235 288 0 63 chr12 75052568 75052631 -46204899 + RSINE1 SINE B4 107 165 0 1 1157 219 358 154 19 chr12 75053141 75053400 -46204130 + L2c LINE L2 3054 3347 -40 1 1157 213 192 0 37 chr12 75053449 75053503 -46204027 + T-rich Low_complexity Low_complexity 1 52 0 1 1157 235 180 162 48 chr12 75053507 75053612 -46203918 + Lx8 LINE L1 7357 7473 0 1 1157 299 333 149 4 chr12 75053637 75053878 -46203652 + L1M4b LINE L1 102 377 -6957 1 1157 1215 274 92 10 chr12 75054372 75054859 -46202671 + L1M4b LINE L1 505 1031 -6303 1 1157 225 0 0 0 chr12 75055205 75055230 -46202300 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1157 387 169 8 39 chr12 75055228 75055357 -46202173 + (TAG)n Simple_repeat Simple_repeat 3 127 0 1 1157 180 0 0 0 chr12 75055590 75055610 -46201920 + (AGCTG)n Simple_repeat Simple_repeat 4 23 0 1 1157 699 271 47 69 chr12 75056007 75056371 -46201159 + L1M4b LINE L1 1229 1584 -5750 1 1157 519 219 62 15 chr12 75056458 75056588 -46200942 + B1_Mur1 SINE Alu 12 147 -2 1 1157 773 290 43 46 chr12 75056607 75056716 -46200814 - ORR1E LTR MaLR -52 307 199 1 1157 310 21 43 0 chr12 75056716 75056763 -46200767 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1157 773 290 43 46 chr12 75056763 75056957 -46200573 - ORR1E LTR MaLR -161 198 5 1 1157 254 202 0 0 chr12 75056960 75057023 -46200507 + L1M4b LINE L1 1657 1709 -5299 1 1157 286 167 103 29 chr12 75057559 75057627 -46199903 - BC1_Mm scRNA scRNA -79 73 1 1 1157 582 120 11 0 chr12 75057670 75057762 -46199768 + B3 SINE B2 38 130 -86 1 1157 29 0 0 0 chr12 75057798 75057827 -46199703 + AT_rich Low_complexity Low_complexity 1 29 0 1 1157 328 282 0 127 chr12 75057840 75057966 -46199564 + PB1D7 SINE Alu 1 110 -10 1 1157 236 53 26 0 chr12 75057966 75058004 -46199526 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1157 204 205 0 0 chr12 75058520 75058559 -46198971 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 1 1157 240 143 0 0 chr12 75058580 75058622 -46198908 + (CATG)n Simple_repeat Simple_repeat 1 42 0 1 1157 505 345 0 88 chr12 75058624 75058783 -46198747 - RSINE1 SINE B4 -18 147 3 1 1157 450 347 54 0 chr12 75058958 75059105 -46198425 - RSINE1 SINE B4 0 165 11 1 1157 339 174 17 34 chr12 75059106 75059225 -46198305 + CT-rich Low_complexity Low_complexity 3 119 0 1 1157 1350 41 0 0 chr12 75059339 75059511 -46198019 + B2_Mm1a SINE B2 21 192 -1 1 1157 579 234 93 43 chr12 75059504 75059665 -46197865 + B3A SINE B2 27 195 0 1 1157 1144 75 7 0 chr12 75060380 75060526 -46197004 + B1_Mm SINE Alu 1 147 0 1 1157 243 0 0 0 chr12 75060526 75060553 -46196977 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1157 1444 185 93 9 chr12 75060577 75060899 -46196631 - RLTR14 LTR ERV1 -33 349 1 1 1157 546 248 0 25 chr12 75061294 75061414 -46196116 + B1_Mur3 SINE Alu 1 117 -32 1 1157 234 0 0 0 chr12 75061414 75061440 -46196090 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1157 482 31 16 0 chr12 75061663 75061727 -46195803 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1157 235 265 42 77 chr12 75061743 75061886 -46195644 + L1MA7 LINE L1 6154 6291 0 1 1157 303 333 29 0 chr12 75061889 75061994 -46195536 + B1F1 SINE Alu 2 109 -40 1 1157 201 182 0 0 chr12 75062564 75062597 -46194933 + A-rich Low_complexity Low_complexity 1 33 0 1 1157 4356 111 83 8 chr12 75062781 75063442 -46194088 + RLTR19B LTR ERVK 2 712 -3 1 1157 504 32 0 0 chr12 75063442 75063504 -46194026 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1157 360 0 0 0 chr12 75063578 75063618 -46193912 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1157 868 114 7 43 chr12 75063618 75063756 -46193774 - B1_Mur4 SINE Alu -17 133 1 1 1157 1177 62 7 0 chr12 75064125 75064271 -46193259 + B1_Mm SINE Alu 1 147 0 1 1157 192 40 0 0 chr12 75064376 75064401 -46193129 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1157 691 95 9 0 chr12 75064895 75065000 -46192530 + B1_Mus2 SINE Alu 42 147 0 1 1157 858 91 0 0 chr12 75065007 75065128 -46192402 + (GA)n Simple_repeat Simple_repeat 2 122 0 1 1157 551 228 87 14 chr12 75065217 75065355 -46192175 - B1_Mur1 SINE Alu -1 148 1 1 1157 360 235 157 16 chr12 75066596 75066717 -46190813 - B1_Mur1 SINE Alu -7 142 5 1 1157 1182 41 14 7 chr12 75067207 75067353 -46190177 + B1_Mus2 SINE Alu 1 147 0 1 1157 272 236 59 43 chr12 75067405 75067509 -46190021 + PB1D10 SINE Alu 4 114 -6 1 1157 396 0 0 0 chr12 75067558 75067602 -46189928 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 1157 279 196 0 0 chr12 75067602 75067653 -46189877 - B1F1 SINE Alu -12 137 87 1 1157 671 214 29 0 chr12 75067770 75067910 -46189620 - B1_Mur4 SINE Alu -6 144 1 1 1157 229 159 99 28 chr12 75068149 75068220 -46189310 - ID_B1 SINE B4 -63 161 86 1 1157 500 285 44 0 chr12 75068229 75068366 -46189164 - ID_B1 SINE B4 -3 221 79 1 1157 896 124 34 20 chr12 75069409 75069557 -46187973 - B1_Mur4 SINE Alu 0 150 1 1 1157 374 238 63 44 chr12 75070318 75070476 -46187054 - RSINE1 SINE B4 -2 163 3 1 1157 864 164 13 20 chr12 75070805 75070954 -46186576 + B1_Mus1 SINE Alu 1 148 0 1 1157 183 42 0 0 chr12 75071096 75071120 -46186410 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1157 873 97 173 6 chr12 75071794 75071950 -46185580 - ORR1B1 LTR MaLR -1 393 212 1 1157 531 128 0 0 chr12 75071951 75072037 -46185493 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 1 1157 1201 54 0 0 chr12 75072037 75072184 -46185346 - B1_Mus2 SINE Alu 0 147 1 1 1157 900 222 71 4 chr12 75072184 75072410 -46185120 + MTD LTR MaLR 112 352 -67 1 1157 231 204 0 151 chr12 75072419 75072604 -46184926 + (AGCTG)n Simple_repeat Simple_repeat 1 157 0 1 1157 368 192 13 22 chr12 75072611 75072701 -46184829 + MTD LTR MaLR 322 404 -17 1 1157 383 286 131 57 chr12 75073925 75074277 -46183253 - HAL1 LINE L1 -1311 1196 819 1 1157 219 232 0 0 chr12 75074322 75074354 -46183176 + T-rich Low_complexity Low_complexity 25 56 0 1 1157 1437 93 0 10 chr12 75074354 75074550 -46182980 - B2_Mm2 SINE B2 0 195 2 1 1157 219 232 0 0 chr12 75074550 75074573 -46182957 + T-rich Low_complexity Low_complexity 2 24 0 1 1157 323 262 97 0 chr12 75075400 75075503 -46182027 + PB1D9 SINE Alu 6 118 -2 1 1157 524 225 17 7 chr12 75076210 75076349 -46181181 + PB1D10 SINE Alu 1 146 -3 1 1157 22 35 0 0 chr12 75077073 75077102 -46180428 + AT_rich Low_complexity Low_complexity 1 29 0 1 1157 905 185 208 0 chr12 75077256 75077434 -46180096 - B3 SINE B2 0 216 2 1 1157 286 280 100 0 chr12 75078125 75078225 -46179305 - PB1D10 SINE Alu -7 110 1 1 1157 368 276 36 60 chr12 75078675 75078800 -46178730 - L1ME1 LINE L1 -154 6025 5901 1 1157 689 168 31 123 chr12 75078800 75078963 -46178567 - B1_Mur2 SINE Alu 0 149 2 1 1157 368 276 36 60 chr12 75078963 75079003 -46178527 - L1ME1 LINE L1 -279 5900 5864 1 1157 253 270 16 0 chr12 75079511 75079574 -46177956 - L1_Rod LINE L1 -145 5702 5639 1 1157 2547 144 69 71 chr12 75079691 75080229 -46177301 - RMER15 LTR ERVL -38 537 1 1 1157 593 216 130 0 chr12 75080439 75080601 -46176929 - B3 SINE B2 -5 211 29 1 1157 378 170 0 0 chr12 75080721 75080815 -46176715 + CT-rich Low_complexity Low_complexity 1 94 0 1 1157 394 283 0 28 chr12 75080838 75080947 -46176583 + PB1D9 SINE Alu 5 110 -10 1 1157 446 258 38 38 chr12 75080989 75081122 -46176408 - ID_B1 SINE B4 -2 222 90 1 1157 1001 58 0 7 chr12 75081137 75081277 -46176253 + B1_Mus1 SINE Alu 10 148 0 1 1157 423 284 114 18 chr12 75081285 75081565 -46175965 - L1MD LINE L1 -985 5161 4855 1 1157 1238 179 78 4 chr12 75081582 75081852 -46175678 - RLTR11A2 LTR ERVK -214 313 24 1 1157 185 0 0 39 chr12 75081927 75081953 -46175577 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1157 418 231 37 0 chr12 75081958 75082063 -46175467 + B3 SINE B2 1 112 -83 1 1157 285 181 262 16 chr12 75082562 75082687 -46174843 - ID_B1 SINE B4 -67 157 2 1 1157 380 314 25 8 chr12 75082979 75083098 -46174432 - B1F SINE Alu -2 147 27 1 1157 249 33 0 0 chr12 75083133 75083163 -46174367 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 1157 222 283 0 0 chr12 75083189 75083235 -46174295 - B1F2 SINE Alu -101 48 3 1 1157 268 242 178 20 chr12 75084384 75084485 -46173045 + PB1D7 SINE Alu 3 119 -1 1 1157 407 290 30 0 chr12 75084485 75084585 -46172945 + B1F SINE Alu 22 124 -25 1 1157 254 106 21 0 chr12 75084637 75084684 -46172846 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1157 329 206 9 73 chr12 75085478 75085588 -46171942 - PB1D10 SINE Alu -9 108 6 1 1157 221 232 0 18 chr12 75085542 75085599 -46171931 - B4A SINE B4 -157 135 80 1 1157 346 214 57 19 chr12 75087483 75087588 -46169942 - B1F1 SINE Alu -30 119 11 1 1157 320 291 27 41 chr12 75087588 75087627 -46169903 - ID_B1 SINE B4 -24 197 56 1 1157 333 263 53 93 chr12 75087664 75087911 -46169619 - L1MEg LINE L1 -4566 1518 1282 1 1157 372 43 0 0 chr12 75087968 75088014 -46169516 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 1 1157 485 175 124 8 chr12 75088472 75088487 -46169043 - B1_Mur2 SINE Alu -10 139 125 1 1157 243 0 0 0 chr12 75088487 75088514 -46169016 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 1157 485 175 124 8 chr12 75088514 75088619 -46168911 - B1_Mur2 SINE Alu -25 124 5 1 1157 293 213 67 0 chr12 75088905 75088980 -46168550 + MTD LTR MaLR 338 417 -2 2 1157 61 45 0 0 chr12 75089880 75089969 -46167561 + AT_rich Low_complexity Low_complexity 1 89 0 2 1157 351 0 0 0 chr12 75090252 75090291 -46167239 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1157 342 191 9 28 chr12 75090297 75090405 -46167125 + C-rich Low_complexity Low_complexity 2 107 0 2 1157 579 254 186 0 chr12 75090688 75090865 -46166665 + B3 SINE B2 1 210 -6 2 1157 441 0 0 0 chr12 75090880 75090929 -46166601 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1157 297 248 26 105 chr12 75092265 75092418 -46165112 + MLT1A0 LTR MaLR 54 194 -171 2 1157 230 366 36 30 chr12 75092659 75092825 -46164705 - MER5A DNA MER1_type -1 188 22 2 1157 781 145 15 0 chr12 75093206 75093337 -46164193 + B1_Mur4 SINE Alu 9 141 -9 2 1157 477 0 0 0 chr12 75093392 75093445 -46164085 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 2 1157 903 216 55 15 chr12 75093946 75094148 -46163382 - B3 SINE B2 -6 210 1 2 1157 386 226 0 0 chr12 75094515 75094599 -46162931 - B1F2 SINE Alu -21 128 45 2 1157 313 117 33 0 chr12 75095229 75095289 -46162241 + (TCTCC)n Simple_repeat Simple_repeat 1 62 0 2 1157 647 203 53 68 chr12 75095503 75095693 -46161837 - B2_Mm2 SINE B2 -8 187 1 2 1157 1574 124 36 7 chr12 75095865 75096142 -46161388 - ORR1A4 LTR MaLR -13 316 32 2 1157 581 282 13 7 chr12 75096270 75096420 -46161110 + RSINE1 SINE B4 4 154 -11 2 1157 243 0 0 0 chr12 75096723 75096750 -46160780 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1157 365 245 32 0 chr12 75096750 75096844 -46160686 + RMER30 DNA MER1_type 99 195 -7 2 1157 23 33 0 0 chr12 75098690 75098720 -46158810 + GC_rich Low_complexity Low_complexity 1 30 0 2 1157 21 0 0 0 chr12 75098768 75098789 -46158741 + GC_rich Low_complexity Low_complexity 1 21 0 2 1157 259 158 303 0 chr12 75099833 75099909 -46157621 + PB1D10 SINE Alu 14 112 -5 2 1157 638 282 15 39 chr12 75101021 75101224 -46156306 + B3A SINE B2 1 198 0 2 1157 1677 169 120 16 chr12 75102041 75102415 -46155115 + MTC LTR MaLR 1 413 -8 2 1157 360 282 206 14 chr12 75102434 75102653 -46154877 + L1MC4 LINE L1 7272 7532 -510 2 1157 282 173 0 19 chr12 75102798 75102851 -46154679 - MTD LTR MaLR -8 411 360 2 1157 239 297 57 19 chr12 75102876 75103034 -46154496 + L1MC4 LINE L1 7754 7917 -125 2 1157 204 67 0 0 chr12 75103144 75103174 -46154356 + (T)n Simple_repeat Simple_repeat 1 30 0 2 144 1114 177 28 14 chr12 75104123 75104341 -46153189 - URR1B DNA MER1_type 0 225 5 2 1158 219 186 0 0 chr12 75104927 75104970 -46152560 + MIRm SINE MIR 224 266 -10 2 1158 351 261 66 25 chr12 75105294 75105416 -46152114 + MTD LTR MaLR 285 411 -8 2 1158 599 306 48 67 chr12 75106062 75106345 -46151185 - MLT1B LTR MaLR -20 370 94 2 1158 862 167 14 0 chr12 75106345 75106489 -46151041 - B1_Mur4 SINE Alu -4 146 1 2 1158 599 306 48 67 chr12 75106489 75106580 -46150950 - MLT1B LTR MaLR -297 93 3 2 1158 478 256 18 136 chr12 75106824 75107045 -46150485 - MTEa LTR MaLR 0 379 185 2 1158 520 241 0 0 chr12 75108027 75108135 -46149395 + RLTR42-int LTR ERVK 2867 2974 -2548 2 1158 596 199 172 12 chr12 75108184 75108347 -46149183 + RLTR42-int LTR ERVK 3970 4158 -1364 2 1158 1420 65 37 16 chr12 75108375 75108391 -46149139 - B2_Mm2 SINE B2 -2 193 180 2 1158 423 0 0 0 chr12 75108391 75108438 -46149092 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1158 1420 65 37 16 chr12 75108438 75108609 -46148921 - B2_Mm2 SINE B2 -16 179 2 2 1158 2513 150 8 38 chr12 75109066 75109571 -46147959 - RLTR16 LTR ERVK -12 493 4 2 1158 1602 223 146 113 chr12 75109610 75110282 -46147248 + RLTR42-int LTR ERVK 4494 5187 -335 2 1158 662 263 79 17 chr12 75110876 75111116 -46146414 + RLTR42-int LTR ERVK 5193 5447 -75 2 1158 681 170 7 22 chr12 75111125 75111263 -46146267 - B1F2 SINE Alu 0 149 14 2 1158 229 259 45 36 chr12 75111170 75111282 -46146248 - MT2B LTR ERVL -344 257 145 2 1158 914 281 60 30 chr12 75112669 75112970 -46144560 + ORR1D2 LTR MaLR 6 315 -55 2 1158 1206 93 0 0 chr12 75112972 75113294 -46144236 + (TCCC)n Simple_repeat Simple_repeat 1 322 0 2 1158 387 0 0 0 chr12 75113294 75113337 -46144193 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 2 1158 220 256 69 11 chr12 75113859 75113946 -46143584 - B1F2 SINE Alu -51 98 7 2 1158 728 248 85 15 chr12 75114005 75114206 -46143324 - B3 SINE B2 0 216 2 2 1158 414 0 0 0 chr12 75114227 75114273 -46143257 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1158 351 0 0 0 chr12 75114273 75114311 -46143219 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1158 307 196 206 0 chr12 75114312 75114404 -46143126 - RSINE1 SINE B4 -43 122 12 2 1158 249 33 0 0 chr12 75115264 75115294 -46142236 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1158 273 202 108 35 chr12 75116260 75116368 -46141162 + MLT1A1 LTR MaLR 87 193 -172 2 1158 443 63 16 0 chr12 75116833 75116896 -46140634 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1158 1088 63 0 47 chr12 75116896 75117045 -46140485 - B1_Mus1 SINE Alu -6 142 1 2 1158 213 296 0 14 chr12 75117075 75117147 -46140383 + GA-rich Low_complexity Low_complexity 3 73 0 2 1158 660 235 26 0 chr12 75117603 75117756 -46139774 + B3 SINE B2 60 216 0 2 1158 255 284 122 0 chr12 75118182 75118256 -46139274 - RSINE1 SINE B4 -6 159 77 2 1158 289 342 231 3 chr12 75118396 75118682 -46138848 - L1M5 LINE L1 -351 5828 5478 2 1158 224 143 24 0 chr12 75118696 75118738 -46138792 + B1F1 SINE Alu 12 54 -95 2 1158 326 313 13 13 chr12 75118795 75118947 -46138583 - L1M5 LINE L1 -727 5447 5296 2 1158 4360 60 0 0 chr12 75118949 75119483 -46138047 - L1_Mus1 LINE L1 0 6567 6034 2 1158 350 223 53 60 chr12 75119493 75119654 -46137876 - L1M5 LINE L1 -844 5302 5157 2 1158 299 260 135 0 chr12 75119654 75119750 -46137780 - PB1D10 SINE Alu -7 110 2 2 1158 238 312 48 119 chr12 75119750 75119857 -46137673 - L1M5 LINE L1 -990 5156 5053 2 1158 363 200 12 12 chr12 75120010 75120091 -46137439 - PB1D9 SINE Alu -1 119 39 2 1158 396 318 99 58 chr12 75120097 75120362 -46137168 - L1M4 LINE L1 -1093 5053 4779 2 1158 216 0 0 0 chr12 75120362 75120386 -46137144 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 2 1158 396 318 99 58 chr12 75120386 75120534 -46136996 - L1M4 LINE L1 -1368 4778 4624 2 1158 258 230 136 42 chr12 75120956 75121074 -46136456 - L1M4 LINE L1 -2066 4080 3952 2 1158 5834 6 0 0 chr12 75121217 75121854 -46135676 + L1Md_A LINE L1 5946 6582 0 2 1158 947 23 31 0 chr12 75122168 75122298 -46135232 + (TCTA)n Simple_repeat Simple_repeat 3 136 0 2 1158 495 0 0 0 chr12 75122530 75122585 -46134945 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 2 1158 464 220 227 16 chr12 75124898 75125083 -46132447 + ID_B1 SINE B4 1 224 0 2 1158 398 20 0 19 chr12 75125101 75125153 -46132377 + (CAA)n Simple_repeat Simple_repeat 2 52 0 2 1158 402 211 11 0 chr12 75125166 75125256 -46132274 + PB1D9 SINE Alu 20 110 -10 2 1158 290 98 0 19 chr12 75125258 75125310 -46132220 + (CAA)n Simple_repeat Simple_repeat 1 51 0 2 1158 625 176 74 56 chr12 75126012 75126174 -46131356 - B3 SINE B2 -3 213 49 2 1158 653 262 10 80 chr12 75126293 75126327 -46131203 + B3A SINE B2 1 30 -168 2 1158 1309 170 9 0 chr12 75126327 75126545 -46130985 + URR1A DNA MER1_type 5 224 -2 2 1158 653 262 10 80 chr12 75126545 75126709 -46130821 + B3A SINE B2 31 185 -13 2 1158 264 217 25 131 chr12 75127025 75127147 -46130383 - MLT1N2 LTR MaLR -436 126 18 2 1158 280 203 81 0 chr12 75127155 75127229 -46130301 + (CATG)n Simple_repeat Simple_repeat 1 80 0 2 1158 35004 76 15 6 chr12 75127238 75133409 -46124121 - L1Md_F2 LINE L1 0 6582 355 2 1158 684 277 20 30 chr12 75133538 75133739 -46123791 + B4 SINE B4 12 210 -82 2 1158 180 345 0 131 chr12 75134965 75135095 -46122435 - MER5B DNA MER1_type -2 176 64 2 1158 408 20 0 0 chr12 75135951 75136000 -46121530 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1158 651 26 0 0 chr12 75136711 75136788 -46120742 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1158 297 333 0 0 chr12 75136790 75136874 -46120656 - ID_B1 SINE B4 -14 210 127 2 1158 241 227 136 0 chr12 75136885 75136951 -46120579 - ID4_ SINE ID -6 77 3 2 1158 426 39 0 0 chr12 75137030 75137082 -46120448 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1158 729 156 50 29 chr12 75137367 75137506 -46120024 + B1_Mur1 SINE Alu 7 148 -1 2 1158 290 335 78 7 chr12 75138444 75138597 -46118933 - L1M5 LINE L1 -1464 4682 4519 2 1158 909 28 0 0 chr12 75138886 75138994 -46118536 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 2 1158 27 0 0 0 chr12 75139087 75139114 -46118416 + AT_rich Low_complexity Low_complexity 1 27 0 2 1158 2420 14 42 0 chr12 75139311 75139595 -46117935 - L1Md_F3 LINE L1 -14 6570 6275 2 1158 38 51 0 0 chr12 75139652 75139711 -46117819 + AT_rich Low_complexity Low_complexity 1 59 0 2 1158 1409 77 0 11 chr12 75139711 75139896 -46117634 - B2_Mm2 SINE B2 -11 184 2 2 1158 1250 235 84 20 chr12 75140565 75140921 -46116609 - MTEa LTR MaLR 0 379 1 2 1158 408 40 0 0 chr12 75141162 75141212 -46116318 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 2 1158 365 150 9 65 chr12 75141212 75141319 -46116211 + C-rich Low_complexity Low_complexity 1 101 0 2 1158 435 259 11 84 chr12 75141328 75141518 -46116012 + CT-rich Low_complexity Low_complexity 4 179 0 2 1158 394 212 0 62 chr12 75141518 75141646 -46115884 + C-rich Low_complexity Low_complexity 34 151 0 2 1158 1038 110 0 0 chr12 75141646 75141801 -46115729 + (TTCCC)n Simple_repeat Simple_repeat 4 158 0 2 1158 708 154 0 0 chr12 75141801 75141924 -46115606 + CT-rich Low_complexity Low_complexity 1 123 0 2 1158 592 226 42 35 chr12 75141930 75142072 -46115458 - B1_Mur1 SINE Alu -6 143 1 2 1158 800 290 6 133 chr12 75142290 75142620 -46114910 + B4 SINE B4 2 289 -3 2 1158 453 287 80 11 chr12 75143579 75143726 -46113804 + B3A SINE B2 1 146 -49 2 1158 378 0 0 0 chr12 75143726 75143768 -46113762 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1158 341 303 54 49 chr12 75143768 75143804 -46113726 + B2_Mm2 SINE B2 147 185 -10 2 1158 315 0 0 0 chr12 75144698 75144733 -46112797 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 2 1158 13781 23 0 0 chr12 75145901 75148155 -46109375 - L1Md_T LINE L1 0 6582 4329 3 1158 39148 41 5 3 chr12 75148155 75154293 -46103237 - L1Md_T LINE L1 0 6585 338 3 1158 273 304 11 45 chr12 75154653 75154832 -46102698 + CT-rich Low_complexity Low_complexity 2 174 0 3 1158 263 374 0 0 chr12 75154818 75154925 -46102605 + C-rich Low_complexity Low_complexity 2 108 0 3 1158 387 0 0 0 chr12 75155792 75155835 -46101695 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1158 344 349 16 0 chr12 75156217 75156368 -46101162 - MIR3 SINE MIR -21 187 34 3 1158 425 77 0 30 chr12 75157190 75157257 -46100273 + (TCTCCC)n Simple_repeat Simple_repeat 5 69 0 3 1158 296 309 31 19 chr12 75157264 75157392 -46100138 - B1F SINE Alu -16 133 3 3 1158 3260 66 10 0 chr12 75157928 75158335 -46099195 - L1_Mus1 LINE L1 0 6567 6157 3 1158 8021 82 13 1 chr12 75158335 75159561 -46097969 - L1_Mus1 LINE L1 -565 6002 4757 3 1158 1392 232 76 6 chr12 75160549 75160866 -46096664 + MER58B DNA MER1_type 1 339 -2 3 1158 225 371 57 31 chr12 75162753 75162945 -46094585 - MIRb SINE MIR -30 238 42 3 1158 700 241 7 0 chr12 75163952 75164093 -46093437 - B1_Mur1 SINE Alu -6 143 2 3 1158 351 0 0 0 chr12 75164405 75164444 -46093086 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1158 276 30 0 0 chr12 75164444 75164476 -46093054 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1158 336 324 104 0 chr12 75164879 75165052 -46092478 - MIR SINE MIR -32 230 40 3 1158 1439 147 18 0 chr12 75165844 75166062 -46091468 + URR1A DNA MER1_type 5 226 0 3 1158 353 279 37 43 chr12 75166110 75166271 -46091259 - MLT1C LTR MaLR -295 172 13 3 1158 4475 12 0 12 chr12 75166423 75166922 -46090608 - MT2_Mm LTR ERVL 0 493 1 3 1158 631 194 0 22 chr12 75168808 75168992 -46088538 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 3 1158 6716 73 0 5 chr12 75169049 75169898 -46087632 - L1Md_F2 LINE L1 -12 6570 5726 3 1158 276 313 12 0 chr12 75170227 75170310 -46087220 - MLT1F1 LTR MaLR -178 391 308 3 1158 510 17 0 0 chr12 75170436 75170495 -46087035 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 1158 1009 85 0 0 chr12 75170501 75170630 -46086900 - B1_Mus1 SINE Alu -19 129 1 3 1158 23 33 0 0 chr12 75170676 75170706 -46086824 + AT_rich Low_complexity Low_complexity 1 30 0 3 1158 941 293 84 58 chr12 75170727 75171117 -46086413 - Lx9 LINE L1 -22 7622 7198 3 1158 243 0 0 0 chr12 75171117 75171144 -46086386 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1158 279 0 0 0 chr12 75171145 75171176 -46086354 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1158 941 293 84 58 chr12 75171176 75171330 -46086200 - Lx9 LINE L1 -447 7197 7062 3 1158 248 299 22 22 chr12 75171336 75171425 -46086105 - MLT1F1 LTR MaLR -434 114 26 3 1158 180 0 0 0 chr12 75171600 75171620 -46085910 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1158 441 331 75 30 chr12 75172105 75172373 -46085157 - B4A SINE B4 -12 280 1 3 1158 448 314 28 28 chr12 75172979 75173123 -46084407 + B4 SINE B4 1 144 -148 3 1158 225 228 0 0 chr12 75173163 75173242 -46084288 + GA-rich Low_complexity Low_complexity 2 80 0 3 1158 295 0 0 161 chr12 75173242 75173397 -46084133 + (CAGAG)n Simple_repeat Simple_repeat 1 130 0 3 1158 434 305 23 15 chr12 75173400 75173530 -46084000 + B4 SINE B4 127 257 -35 3 1158 531 275 144 58 chr12 75173526 75173908 -46083622 - MLT1C LTR MaLR -47 420 6 3 1158 486 237 0 0 chr12 75174142 75174239 -46083291 - PB1D10 SINE Alu -20 97 1 3 1158 624 116 0 0 chr12 75174829 75174924 -46082606 + (TC)n Simple_repeat Simple_repeat 2 96 0 3 1158 1422 70 16 0 chr12 75174954 75175139 -46082391 - B2_Mm1a SINE B2 -5 188 1 3 1158 960 77 0 0 chr12 75175139 75175269 -46082261 + (TTTC)n Simple_repeat Simple_repeat 1 130 0 3 1158 2134 122 39 24 chr12 75175271 75175608 -46081922 - Lx LINE L1 -25 6629 6288 3 1158 257 302 132 13 chr12 75177517 75177668 -46079862 + L2a LINE L2 3255 3423 -3 3 1158 1937 133 19 12 chr12 75178150 75178469 -46079061 - ORR1A4 LTR MaLR -8 321 1 3 1158 2297 250 89 33 chr12 75178516 75179210 -46078320 - Lx8 LINE L1 -261 7212 6480 3 1158 810 131 15 0 chr12 75179218 75179348 -46078182 + B1_Mur4 SINE Alu 3 134 -16 3 1158 234 0 0 0 chr12 75179355 75179381 -46078149 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 3 1158 2276 182 200 8 chr12 75179993 75180012 -46077518 - Lx4B LINE L1 -1 7057 7039 3 1158 279 0 0 0 chr12 75180012 75180043 -46077487 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 1158 2276 182 200 8 chr12 75180043 75180538 -46076992 - Lx4B LINE L1 -20 7038 6444 3 1158 468 0 0 0 chr12 75180575 75180627 -46076903 + (TAA)n Simple_repeat Simple_repeat 2 53 0 3 1158 207 0 0 0 chr12 75180902 75180925 -46076605 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1158 4344 39 13 15 chr12 75181016 75181542 -46075988 - L1Md_T LINE L1 0 6582 6058 3 1158 214 147 53 0 chr12 75181703 75181778 -46075752 + (TCTCTG)n Simple_repeat Simple_repeat 2 80 0 3 1158 801 150 0 0 chr12 75181781 75181961 -46075569 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1158 223 338 113 62 chr12 75182003 75182259 -46075271 + L2 LINE L2 2666 2934 -485 3 1158 427 322 0 0 chr12 75182655 75182770 -46074760 - PB1D10 SINE Alu 0 117 3 3 1158 1320 292 127 24 chr12 75182992 75183739 -46073791 + Charlie24 DNA MER1_type 1606 2429 -21 3 1158 927 162 52 6 chr12 75184076 75184250 -46073280 + URR1B DNA MER1_type 1 182 -43 3 1158 576 268 73 21 chr12 75185579 75185812 -46071718 - MLT1D LTR MaLR -4 501 257 3 1158 23 0 0 0 chr12 75185867 75185890 -46071640 + AT_rich Low_complexity Low_complexity 1 23 0 3 1158 428 282 47 39 chr12 75185920 75186049 -46071481 - RSINE1 SINE B4 -18 147 18 3 1158 251 326 185 0 chr12 75186065 75186200 -46071330 - MLT1D LTR MaLR -440 187 28 3 1158 2642 136 168 10 chr12 75186205 75186710 -46070820 - RMER4B LTR ERVK 0 585 1 3 1158 340 311 83 8 chr12 75187534 75187700 -46069830 - MIR SINE MIR -82 180 7 3 1158 2753 78 11 6 chr12 75188731 75189093 -46068437 + L1VL4 LINE L1 400 763 -5539 3 1158 825 268 100 19 chr12 75190923 75191193 -46066337 - B4 SINE B4 0 292 1 3 1158 336 270 0 22 chr12 75191331 75191422 -46066108 - MLT1J LTR MaLR -423 89 1 3 1158 619 297 74 5 chr12 75192598 75192801 -46064729 - ID_B1 SINE B4 -3 221 5 3 1158 248 215 60 60 chr12 75193258 75193342 -46064188 + Charlie24 DNA MER1_type 2365 2449 -1 3 1158 28 0 0 0 chr12 75194521 75194549 -46062981 + AT_rich Low_complexity Low_complexity 1 28 0 3 1158 390 42 0 0 chr12 75194830 75194878 -46062652 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 3 1158 21 0 0 0 chr12 75195386 75195407 -46062123 + AT_rich Low_complexity Low_complexity 1 21 0 3 1158 189 0 0 0 chr12 75196817 75196838 -46060692 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1158 273 29 0 0 chr12 75197183 75197217 -46060313 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1158 570 333 73 17 chr12 75197237 75197524 -46060006 + MLT1D LTR MaLR 113 415 -90 3 1158 474 338 118 33 chr12 75198031 75198453 -46059077 - Lx8 LINE L1 -17 7456 6999 3 1158 648 279 15 10 chr12 75198466 75198665 -46058865 - Lx8 LINE L1 -589 6884 6685 3 1158 21 0 0 0 chr12 75198874 75198895 -46058635 + AT_rich Low_complexity Low_complexity 1 21 0 3 1158 582 86 0 0 chr12 75198936 75199017 -46058513 + RLTR13B1 LTR ERVK 813 893 0 3 1158 630 0 0 0 chr12 75200203 75200273 -46057257 + (GGA)n Simple_repeat Simple_repeat 1 70 0 3 1158 603 297 6 0 chr12 75200918 75201083 -46056447 - Lx8 LINE L1 -583 6890 6725 3 1158 189 0 0 0 chr12 75201083 75201104 -46056426 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1158 210 196 0 19 chr12 75201104 75201156 -46056374 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1158 465 66 0 0 chr12 75201179 75201240 -46056290 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1158 255 230 0 0 chr12 75201240 75201327 -46056203 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 1158 243 170 0 0 chr12 75201316 75201363 -46056167 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1158 228 67 0 0 chr12 75201434 75201464 -46056066 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 3 1158 1095 95 7 0 chr12 75201464 75201611 -46055919 - B1_Mus1 SINE Alu 0 148 1 3 1158 1017 304 116 37 chr12 75201631 75201751 -46055779 - Lx8 LINE L1 -1 7472 7342 3 1158 892 153 0 28 chr12 75201751 75201892 -46055638 - B1_Mur4 SINE Alu -11 139 3 3 1158 1017 304 116 37 chr12 75201892 75202252 -46055278 - Lx8 LINE L1 -132 7341 6954 3 1158 456 252 96 6 chr12 75202250 75202406 -46055124 - Lx7 LINE L1 -790 6906 6737 3 1158 1068 304 174 54 chr12 75202418 75203102 -46054428 - Lx8 LINE L1 -1003 6470 5691 3 1158 1116 133 0 0 chr12 75203102 75203282 -46054248 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1158 297 0 0 0 chr12 75203282 75203315 -46054215 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 3 1158 1068 261 118 25 chr12 75203315 75203602 -46053928 - Lx8 LINE L1 -1783 5690 5380 3 1158 234 91 0 0 chr12 75204138 75204171 -46053359 + (ATG)n Simple_repeat Simple_repeat 2 34 0 3 1158 22 0 0 0 chr12 75204192 75204214 -46053316 + AT_rich Low_complexity Low_complexity 1 22 0 3 1158 729 110 0 0 chr12 75204354 75204472 -46053058 + (TG)n Simple_repeat Simple_repeat 2 119 0 3 1158 595 277 81 70 chr12 75204513 75204785 -46052745 - B4 SINE B4 -16 276 2 3 1158 1257 201 153 57 chr12 75205453 75205707 -46051823 - Lx7 LINE L1 -4 7692 7435 3 1158 372 43 0 0 chr12 75205707 75205753 -46051777 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1158 1257 201 153 57 chr12 75205753 75205904 -46051626 - Lx7 LINE L1 -262 7434 7248 3 1158 448 195 0 33 chr12 75206330 75206420 -46051110 - ID_B1 SINE B4 -2 222 136 3 1158 579 283 99 26 chr12 75209532 75209804 -46047726 - MLT1B LTR MaLR -78 312 21 3 1158 180 0 0 0 chr12 75210073 75210093 -46047437 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1158 449 273 126 31 chr12 75210493 75210716 -46046814 + MIR SINE MIR 7 250 -12 3 1158 22 80 0 0 chr12 75211892 75211942 -46045588 + AT_rich Low_complexity Low_complexity 1 50 0 3 1158 396 0 0 0 chr12 75213175 75213219 -46044311 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1158 3060 76 82 9 chr12 75213851 75214275 -46043255 + Lx3_Mus LINE L1 6537 6991 -18 3 1158 5476 39 0 22 chr12 75214280 75214933 -46042597 + L1Md_F2 LINE L1 5923 6566 -16 3 1158 261 0 0 0 chr12 75214933 75214962 -46042568 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1158 5476 39 0 22 chr12 75214962 75214983 -46042547 + L1Md_F2 LINE L1 6567 6581 -1 3 1158 968 304 103 56 chr12 75215726 75216330 -46041200 - Lx9 LINE L1 -20 7624 6993 4 1158 357 125 0 0 chr12 75216330 75216386 -46041144 + (A)n Simple_repeat Simple_repeat 1 56 0 4 1158 1485 175 180 62 chr12 75216421 75216920 -46040610 + RMER4B LTR ERVK 17 574 -11 4 1158 1260 258 44 9 chr12 75216937 75217316 -46040214 - Lx9 LINE L1 -676 6968 6421 4 1158 903 125 7 0 chr12 75217324 75217468 -46040062 - B1_Mur4 SINE Alu 0 150 6 4 1158 600 276 12 25 chr12 75217471 75217631 -46039899 - Lx9 LINE L1 -1034 6439 6282 4 1158 2461 183 30 6 chr12 75219206 75219673 -46037857 + Lx7 LINE L1 6859 7336 -360 4 1158 207 0 0 0 chr12 75219733 75219756 -46037774 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 1158 231 216 0 51 chr12 75219822 75219900 -46037630 + (CAGAGA)n Simple_repeat Simple_repeat 5 78 0 4 1158 251 261 0 83 chr12 75219907 75220028 -46037502 + Lx7 LINE L1 7579 7689 -7 4 1158 1099 83 14 0 chr12 75220039 75220184 -46037346 - B1_Mus1 SINE Alu 0 148 2 4 1158 204 222 0 73 chr12 75220284 75220309 -46037221 + T-rich Low_complexity Low_complexity 43 65 0 4 1158 739 64 0 27 chr12 75220309 75220421 -46037109 + (TCCCC)n Simple_repeat Simple_repeat 5 113 0 4 1158 204 222 0 73 chr12 75220421 75220463 -46037067 + T-rich Low_complexity Low_complexity 3 42 0 4 1158 251 26 79 0 chr12 75220649 75220687 -46036843 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 4 1158 1336 106 11 11 chr12 75220692 75220883 -46036647 - B2_Mm1t SINE B2 0 193 3 4 1158 339 25 0 0 chr12 75220905 75220945 -46036585 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1158 189 0 0 0 chr12 75221308 75221329 -46036201 + (CATA)n Simple_repeat Simple_repeat 2 22 0 4 1158 275 248 24 110 chr12 75221547 75221674 -46035856 - Lx6 LINE L1 -27 7433 7318 4 1158 211 125 25 0 chr12 75222396 75222436 -46035094 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1158 25 83 0 0 chr12 75223717 75223777 -46033753 + AT_rich Low_complexity Low_complexity 1 60 0 4 1158 423 0 0 0 chr12 75223806 75223853 -46033677 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1158 377 262 5 161 chr12 75224073 75224296 -46033234 - Lx9 LINE L1 -70 7574 7387 4 1158 841 198 107 16 chr12 75224388 75224651 -46032879 + ORR1C1 LTR MaLR 5 384 0 4 1158 8447 84 22 14 chr12 75224805 75226456 -46031074 + L1VL4 LINE L1 395 2062 -1497 4 1158 1303 128 0 10 chr12 75226466 75226671 -46030859 + Lx LINE L1 6451 6653 -1 4 1158 283 308 66 41 chr12 75226676 75226798 -46030732 + RSINE1 SINE B4 13 137 -28 4 1158 2932 104 7 0 chr12 75227445 75227849 -46029681 - Lx2A LINE L1 -1 7007 6601 4 1158 2834 157 80 2 chr12 75227878 75228394 -46029136 - ORR1B1-int LTR MaLR -1407 556 1 4 1158 431 53 0 0 chr12 75228394 75228451 -46029079 - ORR1B1 LTR MaLR 0 394 338 4 1158 21 0 0 0 chr12 75229055 75229076 -46028454 + AT_rich Low_complexity Low_complexity 1 21 0 4 1158 1969 172 3 80 chr12 75229121 75229507 -46028023 - ORR1B1 LTR MaLR -38 356 1 4 1158 431 191 26 87 chr12 75229507 75229614 -46027916 - MT2A LTR ERVL -433 100 1 4 1158 622 304 94 24 chr12 75231372 75231802 -46025728 - MLT1F1 LTR MaLR -6 647 14 4 1158 441 275 133 2 chr12 75232791 75232967 -46024563 + MIR3 SINE MIR 2 203 -5 4 1158 265 339 126 11 chr12 75233781 75233926 -46023604 - MIRb SINE MIR -88 180 24 4 1158 555 318 133 57 chr12 75234036 75234467 -46023063 - MLT1D LTR MaLR -17 450 5 4 144 2353 118 49 57 chr12 75235030 75235400 -46022130 - ORR1B2 LTR MaLR 0 367 1 4 1159 4810 231 82 49 chr12 75235400 75236100 -46021430 - ORR1B2-int LTR MaLR 0 1370 663 4 1159 711 217 34 20 chr12 75236100 75236246 -46021284 - B1_Mur3 SINE Alu -1 148 1 4 1159 4810 231 82 49 chr12 75236246 75236871 -46020659 - ORR1B2-int LTR MaLR -708 662 1 4 1159 1618 168 115 30 chr12 75236875 75237206 -46020324 - ORR1B2 LTR MaLR -8 359 1 4 1159 417 20 0 0 chr12 75237208 75237258 -46020272 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1159 591 85 0 0 chr12 75237262 75237344 -46020186 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 4 1159 464 282 0 18 chr12 75237556 75237668 -46019862 + PB1D10 SINE Alu 3 112 -5 4 1159 21 36 0 0 chr12 75237998 75238026 -46019504 + AT_rich Low_complexity Low_complexity 1 28 0 4 1159 8179 54 6 1 chr12 75238057 75239587 -46017943 - L1Md_F2 LINE L1 -1 6581 5043 4 1159 458 68 34 0 chr12 75239577 75239636 -46017894 + L1Md_T LINE L1 5525 5585 -298 4 1159 6530 94 68 38 chr12 75239637 75240604 -46016926 + L1Md_T LINE L1 5587 6582 0 4 1159 6628 53 0 25 chr12 75240599 75241407 -46016123 + L1Md_F2 LINE L1 5783 6570 -12 4 1159 704 175 167 0 chr12 75241432 75241558 -46015972 - B1_Mur4 SINE Alu -2 148 2 4 1159 480 18 0 0 chr12 75242422 75242479 -46015051 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1159 836 334 63 9 chr12 75242529 75242864 -46014666 - MLT2D LTR ERVL -61 353 1 4 1159 228 250 40 27 chr12 75242948 75243022 -46014508 - L1ME2z LINE L1 -15 6429 6355 4 1159 21 0 0 0 chr12 75244465 75244486 -46013044 + AT_rich Low_complexity Low_complexity 1 21 0 4 1159 228 250 40 27 chr12 75244764 75244838 -46012692 - L1ME2z LINE L1 -15 6429 6355 4 1159 393 153 0 0 chr12 75245008 75245080 -46012450 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1159 583 247 84 32 chr12 75245140 75245295 -46012235 - RSINE1 SINE B4 0 165 3 4 1159 368 229 55 43 chr12 75246159 75246323 -46011207 + (TATATG)n Simple_repeat Simple_repeat 3 168 0 4 1159 186 71 0 0 chr12 75247716 75247744 -46009786 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1159 930 224 9 27 chr12 75248216 75248436 -46009094 - MTC LTR MaLR 0 419 204 4 1159 25 75 0 0 chr12 75248448 75248501 -46009029 + AT_rich Low_complexity Low_complexity 1 53 0 4 1159 1210 181 70 32 chr12 75248614 75248899 -46008631 - Lx7 LINE L1 -266 7430 7135 4 1159 1052 212 28 14 chr12 75248899 75249133 -46008397 - MTC LTR MaLR -179 217 1 4 1159 1007 252 62 125 chr12 75249376 75249815 -46007715 + L1MA5 LINE L1 5388 5782 -518 4 1159 378 0 0 0 chr12 75249815 75249857 -46007673 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1159 986 252 62 125 chr12 75249857 75249952 -46007578 + L1MA5 LINE L1 5783 5888 -412 4 1159 5413 140 25 27 chr12 75249963 75250879 -46006651 + Lx2B LINE L1 6076 6989 -11 4 1159 684 36 0 0 chr12 75250880 75250963 -46006567 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 1159 1367 195 213 143 chr12 75251579 75252076 -46005454 - MT2A LTR ERVL 0 533 2 4 1159 872 190 5 65 chr12 75252887 75252907 -46004623 - B3 SINE B2 -35 181 167 4 1159 204 122 0 0 chr12 75252907 75252948 -46004582 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1159 872 190 5 65 chr12 75252948 75253113 -46004417 - B3 SINE B2 -50 166 7 4 1159 656 237 15 0 chr12 75253684 75253819 -46003711 + RSINE1 SINE B4 2 138 -27 4 1159 7440 99 26 15 chr12 75253949 75255157 -46002373 - Lx LINE L1 -6 6648 5446 4 1159 291 204 0 0 chr12 75255200 75255254 -46002276 + MIRc SINE MIR 97 150 -118 4 1159 524 170 9 0 chr12 75255629 75255735 -46001795 + CT-rich Low_complexity Low_complexity 2 108 0 4 1159 212 258 16 0 chr12 75255936 75255998 -46001532 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1159 1076 290 38 4 chr12 75256012 75256275 -46001255 - B4A SINE B4 -20 272 1 4 1159 1011 277 102 42 chr12 75257600 75257954 -45999576 + MTD LTR MaLR 15 389 -30 4 1159 486 0 0 0 chr12 75257980 75258034 -45999496 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1159 264 30 0 0 chr12 75258034 75258066 -45999464 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1159 3308 60 0 0 chr12 75258113 75258511 -45999019 - L1_Mus1 LINE L1 -73 5810 5413 4 1159 6246 54 0 1 chr12 75258511 75259237 -45998293 + L1_Mus1 LINE L1 5843 6567 0 4 1159 240 250 0 0 chr12 75259779 75259827 -45997703 + (CCCA)n Simple_repeat Simple_repeat 3 50 0 4 1159 741 106 0 0 chr12 75259829 75259942 -45997588 + (TCTA)n Simple_repeat Simple_repeat 3 115 0 4 1159 240 122 0 20 chr12 75259961 75260011 -45997519 - L1ME2z LINE L1 -121 6323 6275 4 1159 668 280 72 34 chr12 75261503 75261710 -45995820 + ID_B1 SINE B4 1 215 -9 4 1159 201 365 69 50 chr12 75261947 75262048 -45995482 + L2c LINE L2 3273 3375 -12 4 1159 920 271 86 11 chr12 75264898 75265167 -45992363 - B4A SINE B4 -2 290 2 4 1159 729 139 0 0 chr12 75265400 75265522 -45992008 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 4 1159 1236 88 0 0 chr12 75265523 75265671 -45991859 - B1_Mus1 SINE Alu 0 148 1 4 1159 340 260 14 40 chr12 75265990 75266104 -45991426 - L1ME2 LINE L1 -230 6129 5997 4 1159 259 309 127 23 chr12 75266332 75266553 -45990977 - L1ME2 LINE L1 -217 5962 5728 4 1159 385 357 44 40 chr12 75266696 75266994 -45990536 - L1ME2 LINE L1 -2150 3996 3698 4 1159 5974 201 44 22 chr12 75267708 75267889 -45989641 - Lx7 LINE L1 0 7696 7494 4 1159 198 0 0 0 chr12 75267889 75267911 -45989619 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1159 5974 201 44 22 chr12 75267911 75268051 -45989479 - Lx7 LINE L1 -203 7493 7359 4 1159 261 0 0 0 chr12 75268051 75268080 -45989450 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1159 5974 201 44 22 chr12 75268080 75269021 -45988509 - Lx7 LINE L1 -338 7358 6405 4 1159 282 235 58 19 chr12 75269039 75269143 -45988387 - L1MD LINE L1 -2473 3673 3566 4 1159 617 254 8 0 chr12 75269262 75269384 -45988146 - RSINE1 SINE B4 -41 124 2 4 1159 8474 44 3 0 chr12 75269541 75270565 -45986965 - L1Md_F2 LINE L1 -1 6581 5550 4 1159 332 222 75 53 chr12 75270614 75270747 -45986783 - L1MD LINE L1 -2882 3264 3129 4 1159 615 67 0 0 chr12 75270747 75270836 -45986694 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1159 490 283 47 71 chr12 75270846 75271256 -45986274 - L1MCc LINE L1 -3124 3817 3450 4 1159 414 57 0 0 chr12 75271256 75271309 -45986221 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 4 1159 255 327 30 115 chr12 75271309 75271519 -45986011 - L1MCc LINE L1 -3492 3449 3249 4 1159 1941 61 0 0 chr12 75271661 75271889 -45985641 - L1_Mus1 LINE L1 0 6567 6340 4 1159 260 186 35 44 chr12 75272140 75272258 -45985272 + A-rich Low_complexity Low_complexity 1 116 0 4 1159 414 345 113 27 chr12 75272273 75272529 -45985001 - L1MCc LINE L1 -5332 1091 814 4 1159 300 350 63 54 chr12 75272708 75272947 -45984583 - L1MCc LINE L1 -5922 501 261 4 1159 696 24 0 0 chr12 75273941 75274023 -45983507 + (GA)n Simple_repeat Simple_repeat 2 83 0 4 1159 283 310 30 0 chr12 75274027 75274127 -45983403 - L1MDa LINE L1 -6504 129 27 4 1159 2323 90 20 64 chr12 75275566 75275910 -45981620 - ORR1A4 LTR MaLR 0 329 1 4 1159 6061 138 30 29 chr12 75275910 75277231 -45980299 - ORR1A4-int LTR MaLR 0 1792 635 4 1159 677 160 0 118 chr12 75277190 75277325 -45980205 - MT2B LTR ERVL -314 287 169 4 1159 702 277 84 11 chr12 75278192 75278382 -45979148 - B4 SINE B4 -2 290 87 4 1159 618 216 334 3 chr12 75278925 75279250 -45978280 + Lx9 LINE L1 7214 7644 0 4 1159 282 333 85 68 chr12 75279976 75280341 -45977189 + LTR33A LTR ERVL 221 633 -162 4 1159 1428 104 119 0 chr12 75280608 75280810 -45976720 + URR1A DNA MER1_type 1 226 0 4 1159 600 343 136 31 chr12 75282414 75282898 -45974632 - MLT1F2 LTR MaLR -4 556 22 5 1159 201 176 0 0 chr12 75283228 75283262 -45974268 + T-rich Low_complexity Low_complexity 1 34 0 5 1159 768 262 42 48 chr12 75283270 75283506 -45974024 + MLT1A0 LTR MaLR 30 271 -94 5 1159 1965 137 161 3 chr12 75283506 75283836 -45973694 - ORR1C2 LTR MaLR 0 384 3 5 1159 768 262 42 48 chr12 75283836 75283888 -45973642 + MLT1A0 LTR MaLR 272 316 -49 5 1159 392 246 171 17 chr12 75284438 75284585 -45972945 + MTD LTR MaLR 243 383 -36 5 1159 1459 279 66 139 chr12 75284585 75285532 -45971998 + MTD-int LTR MaLR 1 901 -357 5 1159 517 196 70 35 chr12 75286013 75286156 -45971374 - Lx6 LINE L1 0 7460 7313 5 1159 697 300 0 0 chr12 75286177 75286337 -45971193 - Lx6 LINE L1 -1115 6345 6186 5 1159 198 0 0 0 chr12 75286398 75286420 -45971110 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 5 1159 271 254 181 53 chr12 75286432 75286498 -45971032 + Lx6 LINE L1 6680 6768 -928 5 1159 186 43 0 0 chr12 75286498 75286521 -45971009 + (GGAGAA)n Simple_repeat Simple_repeat 3 25 0 5 1159 271 192 47 100 chr12 75286521 75286602 -45970928 + Lx6 LINE L1 6769 6829 -631 5 1159 597 229 8 0 chr12 75286618 75286749 -45970781 + Lx6 LINE L1 6951 7082 -378 5 1159 378 0 0 0 chr12 75286752 75286794 -45970736 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1159 324 41 0 0 chr12 75286816 75286908 -45970622 + L1Md_T LINE L1 6534 6582 0 5 1159 3000 272 71 78 chr12 75287309 75287405 -45970125 - Lx5 LINE L1 -13 7037 6936 5 1159 225 0 0 0 chr12 75287405 75287430 -45970100 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 5 1159 3000 272 71 78 chr12 75287430 75288667 -45968863 - Lx5 LINE L1 -115 6935 5714 5 1159 841 188 7 0 chr12 75288738 75288876 -45968654 - B1_Mur2 SINE Alu -10 139 1 5 1159 333 0 0 0 chr12 75289733 75289770 -45967760 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1159 441 0 0 0 chr12 75290197 75290246 -45967284 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1159 414 0 0 0 chr12 75290246 75290291 -45967239 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1159 640 213 21 21 chr12 75290574 75290718 -45966812 - B1_Mur1 SINE Alu -5 144 1 5 1159 184 127 18 18 chr12 75291341 75291397 -45966133 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 5 1159 258 143 0 0 chr12 75292256 75292305 -45965225 + (TGGGGG)n Simple_repeat Simple_repeat 2 50 0 5 1159 528 271 75 20 chr12 75292655 75292802 -45964728 + RSINE1 SINE B4 1 155 -10 5 1159 276 213 0 0 chr12 75292804 75292865 -45964665 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1159 463 329 72 5 chr12 75293999 75294301 -45963229 + L1MB8 LINE L1 4943 5286 -860 5 1159 1046 279 78 56 chr12 75294468 75295007 -45962523 + L1MB8 LINE L1 5627 6177 -1 5 1159 499 273 138 14 chr12 75295610 75295755 -45961775 - RSINE1 SINE B4 0 165 3 5 1159 185 208 0 59 chr12 75296144 75296195 -45961335 + MIRc SINE MIR 119 166 -102 5 1159 403 264 115 27 chr12 75298427 75298575 -45958955 + MER2 DNA MER2_type 26 186 -159 5 1159 1003 155 162 25 chr12 75298839 75299037 -45958493 - URR1B DNA MER1_type 0 225 1 5 1159 477 0 0 0 chr12 75299065 75299118 -45958412 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1159 426 289 139 8 chr12 75299125 75299254 -45958276 - RSINE1 SINE B4 -17 148 3 5 1159 253 274 107 54 chr12 75299329 75299441 -45958089 - RSINE1 SINE B4 -47 118 1 5 1159 438 263 48 95 chr12 75299441 75299563 -45957967 - MTEa LTR MaLR -257 122 8 5 1159 405 330 46 19 chr12 75299973 75300189 -45957341 - L1MC2 LINE L1 -11 6333 6112 5 1159 933 271 122 84 chr12 75300296 75301026 -45956504 - L1MA5 LINE L1 -289 6011 5254 5 1159 336 319 100 9 chr12 75301032 75301361 -45956169 - L1MEc LINE L1 -4975 1425 1067 5 1159 951 278 93 8 chr12 75301420 75301688 -45955842 - B4A SINE B4 0 292 2 5 1159 270 0 0 0 chr12 75301813 75301843 -45955687 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1159 239 282 36 9 chr12 75301884 75301995 -45955535 - L1M5 LINE L1 -3184 2962 2849 5 1159 228 236 55 0 chr12 75302088 75302151 -45955379 + MLT1-int LTR MaLR 433 504 -867 5 1159 575 273 64 18 chr12 75302179 75302432 -45955098 + MLT2B4 LTR ERVL 252 621 -96 5 1159 386 310 131 0 chr12 75302434 75302579 -45954951 + MER2B DNA MER2_type 2 165 -171 5 1159 726 316 86 0 chr12 75302688 75302932 -45954598 + MER2 DNA MER2_type 80 344 -1 5 1159 233 214 188 12 chr12 75303100 75303185 -45954345 + B4A SINE B4 1 100 -192 5 1159 360 133 0 0 chr12 75304553 75304613 -45952917 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 5 1159 337 203 33 59 chr12 75304671 75304823 -45952707 + (TATAA)n Simple_repeat Simple_repeat 2 149 0 5 1159 3111 59 27 3 chr12 75304826 75305202 -45952328 + IAPEY_LTR LTR ERVK 1 385 0 5 1159 263 262 48 36 chr12 75305480 75305563 -45951967 - L1M3 LINE L1 -584 5596 5513 5 1159 244 275 86 58 chr12 75305680 75305873 -45951657 - L1MD LINE L1 -796 5350 5150 5 1159 351 0 0 0 chr12 75305899 75305938 -45951592 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1159 2980 286 95 56 chr12 75305954 75307122 -45950408 - Lx8 LINE L1 -57 7416 6203 5 1159 360 0 0 0 chr12 75307562 75307602 -45949928 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1159 339 25 0 0 chr12 75307602 75307641 -45949889 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1159 744 257 82 22 chr12 75307641 75307908 -45949622 - L1_Rod LINE L1 -13 5834 5552 5 1159 2152 186 132 6 chr12 75307921 75308298 -45949232 + RMER1C Other Other 786 1200 -142 5 1159 936 84 0 0 chr12 75308298 75308429 -45949101 + (TTC)n Simple_repeat Simple_repeat 2 132 0 5 1159 2152 186 132 6 chr12 75308429 75308544 -45948986 + RMER1C Other Other 1201 1339 -3 5 1159 230 293 0 0 chr12 75308540 75308615 -45948915 - L1M3 LINE L1 -768 5529 5455 5 1159 1652 204 99 19 chr12 75309022 75309397 -45948133 + MTC LTR MaLR 13 417 -4 5 1159 262 325 87 9 chr12 75309403 75309518 -45948012 + L1_Rod LINE L1 3843 3966 -1881 5 1159 2064 300 77 33 chr12 75309525 75310615 -45946915 + L1M2 LINE L1 4145 5282 -861 5 1159 328 213 50 50 chr12 75310678 75310777 -45946753 - PB1D10 SINE Alu -2 115 17 5 1159 246 160 0 0 chr12 75310848 75310898 -45946632 + (TATG)n Simple_repeat Simple_repeat 1 50 0 5 1159 275 275 53 141 chr12 75311079 75311301 -45946229 - L1MEb LINE L1 -1393 4753 4543 5 1159 377 307 31 43 chr12 75311624 75311835 -45945695 - L1MEb LINE L1 -2228 3918 3710 5 1159 565 68 0 0 chr12 75311835 75311909 -45945621 - L1_Mus1 LINE L1 0 6567 6494 5 1159 377 307 31 43 chr12 75311909 75311952 -45945578 - L1MEb LINE L1 -2437 3709 3667 5 1159 549 304 108 35 chr12 75311962 75312221 -45945309 + B4 SINE B4 2 279 -13 5 1159 612 258 12 37 chr12 75312564 75312725 -45944805 - RSINE1 SINE B4 -6 159 3 5 1159 340 327 73 38 chr12 75312737 75313026 -45944504 - L1MEb LINE L1 -3621 2525 2227 5 1159 228 346 31 0 chr12 75313470 75313597 -45943933 - L1MEb LINE L1 -4450 1792 1662 5 1159 459 0 0 0 chr12 75313632 75313683 -45943847 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1159 263 283 0 16 chr12 75313689 75313750 -45943780 - RSINE1 SINE B4 -22 143 84 5 1159 4173 159 134 89 chr12 75314170 75315033 -45942497 - RMER19B LTR ERVK 0 902 1 5 1159 4462 62 0 4 chr12 75315231 75315764 -45941766 - L1Md_F2 LINE L1 -14 6568 6038 5 1159 277 350 22 59 chr12 75316004 75316277 -45941253 - L1MEb LINE L1 -5539 597 335 5 1159 183 80 0 0 chr12 75316566 75316591 -45940939 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1159 224 278 34 15 chr12 75317786 75317895 -45939635 - MIR SINE MIR 0 262 158 5 1159 414 0 0 0 chr12 75318317 75318363 -45939167 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1159 225 0 0 0 chr12 75318363 75318387 -45939143 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1159 335 252 28 37 chr12 75318468 75318575 -45938955 - RMER15 LTR ERVL -65 510 405 5 1159 352 37 37 0 chr12 75318956 75319010 -45938520 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 5 1159 212 369 122 11 chr12 75319618 75319799 -45937731 + MIR SINE MIR 26 226 -36 5 1159 1379 176 47 76 chr12 75319845 75319969 -45937561 - ORR1B2 LTR MaLR -75 292 164 5 1159 1238 75 0 11 chr12 75319969 75320145 -45937385 + (GGGAGA)n Simple_repeat Simple_repeat 5 178 0 5 1159 1379 176 47 76 chr12 75320145 75320321 -45937209 - ORR1B2 LTR MaLR -204 163 3 5 1159 252 0 0 0 chr12 75321596 75321624 -45935906 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1159 937 326 4 29 chr12 75322705 75322986 -45934544 - B4A SINE B4 -18 274 1 5 1159 189 195 0 0 chr12 75323969 75324010 -45933520 + GA-rich Low_complexity Low_complexity 6 46 0 5 1159 534 263 150 44 chr12 75325368 75325595 -45931935 - Lx8 LINE L1 -2 7471 7221 5 1159 627 182 98 8 chr12 75325612 75325745 -45931785 - Lx9 LINE L1 -1718 5926 5782 5 1159 635 234 105 6 chr12 75325884 75326056 -45931474 - RMER30 DNA MER1_type -3 199 11 5 1159 324 0 0 0 chr12 75326189 75326225 -45931305 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1159 234 0 0 0 chr12 75326248 75326274 -45931256 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1159 626 302 118 37 chr12 75326318 75326614 -45930916 - MLT2C1 LTR ERVL -52 345 26 5 1159 209 200 0 0 chr12 75327538 75327585 -45929945 + (TATG)n Simple_repeat Simple_repeat 1 47 0 5 1159 242 148 19 0 chr12 75327614 75327668 -45929862 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1159 648 366 75 15 chr12 75327693 75327959 -45929571 - B4A SINE B4 -2 290 9 5 1159 194 136 0 22 chr12 75328446 75328491 -45929039 + GA-rich Low_complexity Low_complexity 1 44 0 5 1159 227 269 0 43 chr12 75329928 75329998 -45927532 - PB1D10 SINE Alu -4 113 47 5 1159 180 0 0 0 chr12 75330555 75330575 -45926955 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1159 186 43 0 0 chr12 75330576 75330599 -45926931 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1159 816 11 0 0 chr12 75331569 75331662 -45925868 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 1159 217 333 82 18 chr12 75334195 75334305 -45923225 - MIR SINE MIR -83 179 63 5 1159 414 0 0 0 chr12 75334833 75334879 -45922651 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1159 214 303 0 15 chr12 75335062 75335129 -45922401 - MIR SINE MIR -164 98 33 5 1159 590 240 24 8 chr12 75336603 75336729 -45920801 - B1F SINE Alu 0 149 22 5 1159 259 331 21 35 chr12 75337341 75337485 -45920045 + L2 LINE L2 2442 2583 -836 5 1159 482 302 29 70 chr12 75339696 75339938 -45917592 + MIRb SINE MIR 27 258 -10 5 1159 989 256 85 19 chr12 75340615 75340874 -45916656 + B4 SINE B4 13 288 -4 6 1159 289 40 60 0 chr12 75341592 75341642 -45915888 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 6 1159 409 296 61 20 chr12 75341646 75341794 -45915736 + MamRep1161 DNA TcMar 261 414 -543 6 1159 451 148 79 16 chr12 75342402 75342496 -45915034 + B1_Mur4 SINE Alu 1 113 -37 6 1159 246 156 0 0 chr12 75343500 75343545 -45913985 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 6 1159 351 0 0 0 chr12 75343568 75343607 -45913923 + (TATG)n Simple_repeat Simple_repeat 2 40 0 6 1159 771 180 65 0 chr12 75343623 75343762 -45913768 - B1_Mus1 SINE Alu 0 148 1 6 1159 235 232 70 18 chr12 75343901 75343958 -45913572 + BC1_Mm scRNA scRNA 9 68 -84 6 1159 251 242 158 0 chr12 75343989 75344084 -45913446 + ID_B1 SINE B4 115 224 0 6 1159 258 160 0 0 chr12 75344618 75344668 -45912862 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 1159 754 267 45 1 chr12 75344668 75344904 -45912626 + L1MB2 LINE L1 4865 5138 -1002 6 1159 500 264 25 0 chr12 75344921 75345042 -45912488 + B4A SINE B4 1 124 -168 6 1159 223 295 0 0 chr12 75345109 75345170 -45912360 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1159 1161 288 98 19 chr12 75345211 75345992 -45911538 + L1MB2 LINE L1 5214 6064 -107 6 1159 209 204 0 0 chr12 75346168 75346217 -45911313 + T-rich Low_complexity Low_complexity 1 49 0 6 1159 1444 277 36 62 chr12 75346255 75346917 -45910613 + L1_Rod LINE L1 3981 4625 -1222 6 1159 4218 74 10 15 chr12 75347020 75347607 -45909923 - MusHAL1 LINE L1 -1591 1121 538 6 1159 18423 57 2 2 chr12 75347610 75350043 -45907487 + L1VL1 LINE L1 1123 3555 -2328 6 1159 4638 111 41 6 chr12 75350038 75350727 -45906803 - L1VL2 LINE L1 -5509 826 114 6 1159 1926 269 138 48 chr12 75350805 75351948 -45905582 - L1MA6 LINE L1 -365 5935 4624 6 1159 10697 138 11 3 chr12 75352954 75354656 -45902874 - L1_Mur2 LINE L1 -734 5143 3428 6 1159 624 330 60 64 chr12 75354911 75355413 -45902117 + MLT1J-int LTR MaLR 16 515 -872 6 1159 3780 79 0 2 chr12 75355414 75356057 -45901473 + L1VL2 LINE L1 533 1173 -2442 6 1159 338 393 14 7 chr12 75356085 75356226 -45901304 - LTR33B LTR ERVL -319 184 43 6 1159 251 282 25 80 chr12 75356552 75356714 -45900816 + L1M5 LINE L1 4465 4617 -1529 6 1159 366 23 0 0 chr12 75356738 75356781 -45900749 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1159 516 254 35 9 chr12 75356793 75356908 -45900622 - RSINE1 SINE B4 -46 119 2 6 1159 450 307 119 44 chr12 75357199 75357519 -45900011 + L1M5 LINE L1 4935 5278 -868 6 1159 1567 75 5 0 chr12 75358250 75358449 -45899081 + L1_Mus2 LINE L1 6367 6566 0 6 1159 265 24 48 0 chr12 75358489 75358531 -45898999 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1159 467 274 66 15 chr12 75358589 75358726 -45898804 - B1F SINE Alu -1 148 5 6 1159 32487 99 10 1 chr12 75358742 75364668 -45892862 - L1_Mus1 LINE L1 0 6567 584 6 1160 1194 36 0 0 chr12 75366440 75366578 -45890952 - L1Md_A LINE L1 -396 6186 6049 6 1160 829 207 52 117 chr12 75372399 75372629 -45884901 - ID_B1 SINE B4 -8 216 2 6 1160 227 333 36 36 chr12 75374169 75374306 -45883224 + LTR84b LTR ERVL 62 198 -563 6 1160 216 0 0 0 chr12 75374562 75374586 -45882944 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 6 1160 233 267 13 26 chr12 75374606 75374683 -45882847 + Lx8 LINE L1 5831 5906 -1567 6 1160 23 0 0 0 chr12 75375869 75375892 -45881638 + AT_rich Low_complexity Low_complexity 1 23 0 6 1160 1459 222 123 28 chr12 75376039 75376543 -45880987 - L1MC1 LINE L1 -11 6322 5771 6 1160 533 253 38 38 chr12 75377749 75377909 -45879621 - RSINE1 SINE B4 -3 162 3 6 1160 1069 63 0 0 chr12 75378984 75379127 -45878403 + B1_Mus1 SINE Alu 6 148 0 6 1160 183 129 0 0 chr12 75379131 75379162 -45878368 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1160 195 42 0 0 chr12 75379400 75379424 -45878106 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 6 1160 285 321 35 35 chr12 75380822 75380938 -45876592 + RSINE1 SINE B4 42 157 -8 6 1160 1177 151 159 22 chr12 75381693 75381809 -45875721 - Lx9 LINE L1 -25 7619 7478 6 1160 387 41 0 0 chr12 75381809 75381858 -45875672 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1160 1177 151 159 22 chr12 75381858 75382018 -45875512 - Lx9 LINE L1 -167 7477 7306 6 1160 482 254 9 17 chr12 75382197 75382313 -45875217 + PB1D10 SINE Alu 3 117 0 6 1160 247 333 0 0 chr12 75382672 75382738 -45874792 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 6 1160 401 110 0 14 chr12 75382765 75382839 -45874691 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1160 359 286 12 0 chr12 75382850 75382934 -45874596 - B4 SINE B4 -184 108 24 6 1160 385 232 34 51 chr12 75384453 75384571 -45872959 - Lx8 LINE L1 -1 7472 7357 6 1160 222 211 39 0 chr12 75385319 75385371 -45872159 + (CCG)n Simple_repeat Simple_repeat 2 55 0 6 1160 183 208 94 0 chr12 75390335 75390388 -45867142 - MIRm SINE MIR -155 121 64 6 1160 286 269 0 0 chr12 75390497 75390564 -45866966 - ID2 SINE ID -13 70 4 6 1160 192 318 0 31 chr12 75391937 75392002 -45865528 - MIRc SINE MIR -139 129 67 6 1160 305 156 13 0 chr12 75392534 75392611 -45864919 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 6 1160 339 201 6 12 chr12 75392615 75392786 -45864744 + (TA)n Simple_repeat Simple_repeat 2 171 0 6 1160 348 24 0 0 chr12 75393196 75393237 -45864293 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1160 301 258 144 0 chr12 75393434 75393531 -45863999 + MER5A DNA MER1_type 79 189 0 6 1160 833 287 61 8 chr12 75393579 75393842 -45863688 + B4A SINE B4 13 289 -3 6 1160 284 102 0 20 chr12 75393881 75393931 -45863599 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1160 244 237 0 0 chr12 75394065 75394124 -45863406 + A-rich Low_complexity Low_complexity 1 59 0 6 1160 3143 50 31 0 chr12 75394978 75395362 -45862168 - MTA_Mm LTR MaLR 0 396 1 6 1160 21 0 0 0 chr12 75395372 75395393 -45862137 + AT_rich Low_complexity Low_complexity 1 21 0 6 1160 2062 211 158 3 chr12 75395455 75396025 -45861505 - Lx9 LINE L1 -2 7642 6985 6 1160 215 214 14 0 chr12 75397158 75397185 -45860345 + T-rich Low_complexity Low_complexity 46 72 0 6 1160 252 0 0 0 chr12 75397185 75397213 -45860317 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1160 215 214 14 0 chr12 75397213 75397255 -45860275 + T-rich Low_complexity Low_complexity 4 45 0 6 1160 387 60 0 0 chr12 75397630 75397680 -45859850 + (T)n Simple_repeat Simple_repeat 1 50 0 6 1160 336 240 0 0 chr12 75399777 75399898 -45857632 + (CA)n Simple_repeat Simple_repeat 2 122 0 6 1160 560 189 7 0 chr12 75399946 75400094 -45857436 + (CA)n Simple_repeat Simple_repeat 2 150 0 6 1160 243 0 0 0 chr12 75400411 75400438 -45857092 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1160 186 118 0 0 chr12 75401936 75401970 -45855560 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1160 531 234 7 68 chr12 75401976 75402123 -45855407 + ID_B1 SINE B4 77 214 -10 6 1160 2413 142 29 3 chr12 75404913 75405293 -45852237 + ORR1B1 LTR MaLR 5 394 0 6 1160 658 284 132 12 chr12 75405437 75405686 -45851844 + B4A SINE B4 1 279 -13 6 1160 1861 176 79 51 chr12 75405746 75406140 -45851390 + MYSERV16_I-int LTR ERVK 502 906 -1420 6 1160 225 352 54 21 chr12 75406140 75406233 -45851297 + Lx8 LINE L1 7205 7300 -173 6 1160 294 29 0 0 chr12 75406299 75406334 -45851196 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1160 507 250 57 0 chr12 75406482 75406622 -45850908 + B1F SINE Alu 2 149 0 6 1160 232 275 12 12 chr12 75406684 75406765 -45850765 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 6 1160 1927 78 84 39 chr12 75406772 75407105 -45850425 - RLTR10B2 LTR ERVK 0 365 18 6 1160 269 71 0 0 chr12 75407141 75407183 -45850347 - RLTR10B2 LTR ERVK -250 42 1 6 1160 7666 52 0 29 chr12 75407183 75408142 -45849388 - MMERVK10C-int LTR ERVK 0 7581 6651 6 1160 21813 62 10 0 chr12 75408133 75410823 -45846707 - MMERVK10C-int LTR ERVK -1771 5810 3095 6 1160 2498 76 0 0 chr12 75411088 75411405 -45846125 - MMERVK10C-int LTR ERVK -7264 317 1 6 1160 1927 78 84 39 chr12 75411405 75411738 -45845792 - RLTR10B2 LTR ERVK 0 365 18 6 1160 296 48 0 0 chr12 75411774 75411816 -45845714 - RLTR10B2 LTR ERVK -250 42 1 6 1160 237 178 0 0 chr12 75411830 75411875 -45845655 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1160 799 120 17 33 chr12 75412322 75412503 -45845027 + CT-rich Low_complexity Low_complexity 3 180 0 6 1160 357 122 0 0 chr12 75412503 75412552 -45844978 + (TCCCC)n Simple_repeat Simple_repeat 5 53 0 6 1160 1043 60 27 0 chr12 75412554 75412704 -45844826 - B2_Mm1t SINE B2 -18 175 22 6 1160 240 262 0 16 chr12 75412740 75412802 -45844728 + MIRb SINE MIR 131 191 -77 6 1160 711 305 116 47 chr12 75413763 75414083 -45843447 + MLT1A1 LTR MaLR 49 390 -18 6 1160 539 155 4 35 chr12 75414113 75414221 -45843309 - B1_Mus1 SINE Alu -14 106 1 6 1160 816 88 0 0 chr12 75415072 75415186 -45842344 + (TTC)n Simple_repeat Simple_repeat 1 114 0 6 1160 827 263 20 5 chr12 75415310 75415509 -45842021 + B3 SINE B2 5 206 -10 6 1160 411 221 270 35 chr12 75415905 75416097 -45841433 + RMER20B LTR ERVK 94 330 -297 6 1160 342 0 0 0 chr12 75416097 75416135 -45841395 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1160 474 233 56 94 chr12 75416146 75416359 -45841171 + RMER20B LTR ERVK 394 598 -29 6 1160 290 190 17 0 chr12 75416361 75416419 -45841111 + RMER20B LTR ERVK 525 583 -44 6 1160 265 319 0 11 chr12 75416802 75416894 -45840636 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 6 1160 559 221 6 6 chr12 75416900 75417064 -45840466 + (TA)n Simple_repeat Simple_repeat 2 165 0 6 1160 288 0 0 0 chr12 75417361 75417393 -45840137 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1160 182 197 0 32 chr12 75417705 75417768 -45839762 + CT-rich Low_complexity Low_complexity 3 63 0 6 1160 189 0 0 0 chr12 75418570 75418591 -45838939 + (GGGTG)n Simple_repeat Simple_repeat 5 25 0 6 1160 260 326 6 44 chr12 75419983 75420166 -45837364 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 6 1160 56 83 0 0 chr12 75420409 75420542 -45836988 + AT_rich Low_complexity Low_complexity 1 133 0 6 1160 457 274 35 0 chr12 75420574 75420687 -45836843 - B3A SINE B2 -81 117 1 6 1160 22 0 0 0 chr12 75420732 75420754 -45836776 + AT_rich Low_complexity Low_complexity 1 22 0 6 1160 504 217 19 0 chr12 75420779 75420885 -45836645 - RSINE1 SINE B4 -42 123 16 7 1160 189 107 0 0 chr12 75421903 75421931 -45835599 + (ATG)n Simple_repeat Simple_repeat 3 30 0 7 1160 252 77 0 0 chr12 75422044 75422083 -45835447 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1160 216 0 0 0 chr12 75422083 75422107 -45835423 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1160 313 301 57 61 chr12 75422331 75422543 -45834987 - RLTR31_Mm LTR ERVK 0 561 351 7 1160 3771 149 12 17 chr12 75422558 75423205 -45834325 - RLTR17 LTR ERVK -48 644 1 7 1160 286 303 112 73 chr12 75424141 75424319 -45833211 + MER5A DNA MER1_type 1 185 -4 7 1160 387 0 0 0 chr12 75424675 75424718 -45832812 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1160 367 246 34 76 chr12 75425339 75425536 -45831994 - L1MA4A LINE L1 -331 5969 5782 7 1160 534 31 0 0 chr12 75425594 75425658 -45831872 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 7 1160 415 283 47 27 chr12 75426289 75426438 -45831092 - LTR16A LTR ERVL -75 376 225 7 1160 343 297 102 0 chr12 75426536 75426664 -45830866 - HERV16-int LTR ERVL -3122 1874 1734 7 1160 405 39 0 0 chr12 75429350 75429401 -45828129 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1160 458 91 0 13 chr12 75430087 75430165 -45827365 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1160 488 249 25 115 chr12 75430247 75430611 -45826919 - Lx7 LINE L1 -1 7695 7365 7 1160 27 0 0 0 chr12 75432178 75432205 -45825325 + AT_rich Low_complexity Low_complexity 1 27 0 7 1160 634 264 96 8 chr12 75435272 75435523 -45822007 - B4A SINE B4 -10 282 2 7 1160 191 320 71 10 chr12 75435595 75435693 -45821837 + MIR SINE MIR 22 125 -83 7 1160 281 82 20 0 chr12 75436829 75436878 -45820652 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 7 1160 1756 128 118 0 chr12 75436930 75437219 -45820311 + ORR1A2 LTR MaLR 5 327 0 7 1160 910 144 7 33 chr12 75437299 75437450 -45820080 - B1_Mur3 SINE Alu -2 147 1 7 1160 299 273 105 10 chr12 75437903 75438103 -45819427 - Charlie5 DNA MER1_type 0 2624 2406 7 1160 7969 40 0 0 chr12 75438204 75439137 -45818393 - L1Md_A LINE L1 0 6582 5650 7 1160 666 68 0 0 chr12 75439398 75439486 -45818044 + (TCC)n Simple_repeat Simple_repeat 1 88 0 7 1160 2315 115 70 8 chr12 75439795 75440180 -45817350 + MTC LTR MaLR 13 421 0 7 1160 208 100 0 48 chr12 75442388 75442430 -45815100 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 1160 273 298 183 29 chr12 75442527 75442800 -45814730 + LTR33 LTR ERVL 27 341 -174 7 1160 384 252 0 0 chr12 75443384 75443523 -45814007 + (TG)n Simple_repeat Simple_repeat 2 140 0 7 1160 234 0 0 0 chr12 75443525 75443551 -45813979 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 1160 595 313 111 50 chr12 75444427 75444770 -45812760 - MLT1A LTR MaLR 0 374 11 7 1160 698 306 118 0 chr12 75444811 75445082 -45812448 - MLT-int LTR MaLR -39 1696 1394 7 1160 462 319 49 33 chr12 75446118 75446361 -45811169 + MER31-int LTR ERV1 977 1223 -3713 7 1160 436 279 68 0 chr12 75446387 75446548 -45810982 + MER31-int LTR ERV1 1605 1776 -3580 7 1160 716 282 19 28 chr12 75446595 75446689 -45810841 + B3 SINE B2 4 97 -119 7 1160 3109 46 0 0 chr12 75446689 75447035 -45810495 - ORR1A1 LTR MaLR 0 346 1 7 1160 716 282 19 28 chr12 75447035 75447155 -45810375 + B3 SINE B2 98 215 -1 7 1160 207 0 0 0 chr12 75448183 75448206 -45809324 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1160 1194 80 0 0 chr12 75449153 75449316 -45808214 + (TCC)n Simple_repeat Simple_repeat 3 165 0 7 1160 379 260 59 73 chr12 75450334 75450673 -45806857 + MER31-int LTR ERV1 1604 1850 -3086 7 1160 5018 88 86 28 chr12 75450946 75450975 -45806555 - Lx3_Mus LINE L1 0 7009 6988 7 1160 189 0 0 0 chr12 75450975 75450996 -45806534 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 7 1160 5018 88 86 28 chr12 75450996 75451280 -45806250 - Lx3_Mus LINE L1 -22 6987 6671 7 1160 1809 21 0 0 chr12 75451280 75451472 -45806058 - B2_Mm1t SINE B2 -1 192 1 7 1160 5018 88 86 28 chr12 75451472 75451909 -45805621 - Lx3_Mus LINE L1 -339 6670 6214 7 1160 623 126 74 16 chr12 75451909 75452030 -45805500 + Lx3A LINE L1 5868 5995 -986 7 1160 572 203 67 15 chr12 75452275 75452410 -45805120 - Lx6 LINE L1 -1 7459 7318 7 1160 408 327 35 35 chr12 75452411 75452582 -45804948 - B4 SINE B4 -120 172 2 7 1160 345 192 66 88 chr12 75452583 75452720 -45804810 - L1MCa LINE L1 -1104 5217 5084 7 1160 506 184 123 0 chr12 75452720 75452834 -45804696 - B3 SINE B2 -86 130 3 7 1160 261 232 0 55 chr12 75452840 75452913 -45804617 - L1MCa LINE L1 -1981 4340 4272 7 1160 1876 161 152 15 chr12 75452912 75453373 -45804157 + Lx9 LINE L1 6975 7476 -168 7 1160 192 77 0 0 chr12 75453373 75453399 -45804131 + (TATATG)n Simple_repeat Simple_repeat 4 29 0 7 1160 774 169 254 0 chr12 75453399 75453508 -45804022 + Lx9 LINE L1 7477 7635 -9 7 1160 1139 43 0 7 chr12 75453614 75453755 -45803775 - B1_Mus2 SINE Alu 0 147 8 7 1160 1952 287 123 29 chr12 75453849 75455094 -45802436 - L1MCa LINE L1 -2311 4010 2671 7 1160 327 235 66 66 chr12 75455072 75455268 -45802262 - L1MCa LINE L1 -4227 2281 2086 7 1160 403 212 35 0 chr12 75455268 75455381 -45802149 + (CATATA)n Simple_repeat Simple_repeat 5 121 0 7 1160 5303 2 0 0 chr12 75455508 75456057 -45801473 - L1Md_A LINE L1 0 6582 6034 7 1160 421 235 109 25 chr12 75456065 75456266 -45801264 - L1MCa LINE L1 -4501 2007 1790 7 1160 538 336 47 36 chr12 75456360 75456635 -45800895 - B4A SINE B4 -13 279 2 7 1160 232 254 16 0 chr12 75456635 75456698 -45800832 - L1MCa LINE L1 -4718 1790 1727 7 1160 5502 67 42 0 chr12 75456742 75457417 -45800113 - L1_Mus2 LINE L1 0 6566 5864 7 1160 7672 88 2 3 chr12 75457417 75458465 -45799065 + L1_Mm LINE L1 3253 4299 -1584 7 1160 402 152 33 0 chr12 75458531 75458623 -45798907 + CT-rich Low_complexity Low_complexity 2 96 0 7 1160 613 305 112 14 chr12 75458917 75459271 -45798259 + MER31-int LTR ERV1 3813 4201 -735 7 1160 28 0 0 0 chr12 75459381 75459409 -45798121 + AT_rich Low_complexity Low_complexity 1 28 0 7 1160 292 255 39 10 chr12 75459440 75459543 -45797987 + MER31-int LTR ERV1 4325 4430 -506 7 1160 624 328 56 33 chr12 75459935 75460272 -45797258 - MLT-int LTR MaLR -1390 345 1 7 1160 312 248 103 34 chr12 75460413 75460559 -45796971 - MLT1A LTR MaLR -211 163 8 7 1160 350 262 75 35 chr12 75461141 75461315 -45796215 - Charlie18a DNA MER1_type -24 318 138 7 1160 489 110 0 0 chr12 75461529 75461602 -45795928 + (TA)n Simple_repeat Simple_repeat 1 73 0 7 1160 183 278 27 27 chr12 75461649 75461723 -45795807 + L2a LINE L2 3344 3417 -9 7 1160 319 356 74 23 chr12 75462526 75462782 -45794748 + LTR79 LTR ERVL 127 395 -132 7 1160 183 42 0 0 chr12 75463277 75463301 -45794229 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1160 487 117 10 10 chr12 75463302 75463406 -45794124 + (GA)n Simple_repeat Simple_repeat 1 104 0 7 1160 288 257 157 0 chr12 75463637 75463707 -45793823 + Lx8 LINE L1 7072 7152 -321 7 1160 372 104 0 0 chr12 75463881 75463948 -45793582 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 7 1160 380 268 8 74 chr12 75464620 75464741 -45792789 + MLT1A0 LTR MaLR 23 135 -230 7 1160 293 292 59 37 chr12 75464766 75464901 -45792629 - MLT1A LTR MaLR -22 352 215 7 1160 483 269 59 20 chr12 75465214 75465366 -45792164 + MLT1A0 LTR MaLR 208 365 0 7 1160 574 262 104 35 chr12 75465496 75465698 -45791832 + B3A SINE B2 1 216 0 7 1160 21 0 0 0 chr12 75465863 75465884 -45791646 + AT_rich Low_complexity Low_complexity 1 21 0 7 1160 26 0 0 0 chr12 75465931 75465957 -45791573 + AT_rich Low_complexity Low_complexity 1 26 0 7 1160 644 0 13 0 chr12 75466175 75466251 -45791279 + (GA)n Simple_repeat Simple_repeat 1 77 0 7 1160 329 189 135 0 chr12 75466255 75466329 -45791201 - B1F1 SINE Alu -62 87 4 7 1160 375 372 4 17 chr12 75466568 75466798 -45790732 + MuRRS4-int LTR ERV1 3546 3772 -1291 7 1160 210 244 0 0 chr12 75466994 75467035 -45790495 + polypyrimidine Low_complexity Low_complexity 4 44 0 7 1160 7452 76 17 50 chr12 75467053 75467247 -45790283 - L1_Mus4 LINE L1 0 6636 6482 7 1160 1281 35 14 0 chr12 75467247 75467392 -45790138 - B1_Mus1 SINE Alu 0 148 2 7 1160 7452 76 17 50 chr12 75467392 75468257 -45789273 - L1_Mus4 LINE L1 -155 6481 5626 7 1160 3167 60 21 5 chr12 75468257 75468639 -45788891 - RLTR10 LTR ERVK -2 388 1 7 1160 7452 116 7 38 chr12 75468639 75468727 -45788803 - L1_Mus4 LINE L1 -258 5625 5539 7 1160 486 263 84 62 chr12 75469148 75469375 -45788155 - RMER2 LTR ERV1 -6 561 330 7 1160 456 116 0 0 chr12 75471816 75471902 -45785628 + (TC)n Simple_repeat Simple_repeat 1 86 0 7 1160 329 305 90 9 chr12 75472001 75472213 -45785317 - L1ME2z LINE L1 -474 5970 5742 7 1160 454 327 135 38 chr12 75472415 75472682 -45784848 + ORR1E LTR MaLR 67 359 0 7 1160 262 264 123 41 chr12 75472698 75472868 -45784662 - L1ME2z LINE L1 -538 5626 5443 7 1160 264 59 0 0 chr12 75472903 75472937 -45784593 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1160 546 246 32 96 chr12 75472989 75473146 -45784384 - B4A SINE B4 -142 150 4 7 1160 307 269 179 0 chr12 75473151 75473296 -45784234 - L1MD LINE L1 -743 5403 5233 7 1160 384 269 205 23 chr12 75473302 75473786 -45783744 - L1ME2z LINE L1 -927 5219 4621 7 1160 340 300 150 51 chr12 75473826 75473957 -45783573 - Lx8 LINE L1 0 7473 7339 7 1160 216 0 0 0 chr12 75473957 75473981 -45783549 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1160 340 300 150 51 chr12 75473981 75474123 -45783407 - Lx8 LINE L1 -135 7338 7175 7 1160 316 279 102 11 chr12 75474123 75474370 -45783160 - L1ME2z LINE L1 -1528 4618 4349 7 1160 357 281 0 58 chr12 75474590 75474677 -45782853 - ID4_ SINE ID 0 83 2 7 1160 392 194 156 31 chr12 75474692 75474788 -45782742 - PB1D10 SINE Alu -8 109 2 7 1160 495 69 0 0 chr12 75474788 75474860 -45782670 + (TTA)n Simple_repeat Simple_repeat 1 72 0 7 1160 261 222 87 48 chr12 75474880 75474984 -45782546 - L1ME2z LINE L1 -4814 1428 1321 7 1160 374 0 0 21 chr12 75474984 75475031 -45782499 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1160 788 192 171 25 chr12 75475090 75475235 -45782295 - MTD LTR MaLR 0 407 241 7 1160 2514 82 70 3 chr12 75475235 75475577 -45781953 - RLTR9A LTR ERVK -1 367 3 7 1160 788 221 214 42 chr12 75475577 75475773 -45781757 - MTD LTR MaLR -164 255 2 7 1160 662 322 35 0 chr12 75476338 75476540 -45780990 - B3 SINE B2 -6 210 2 7 1160 6322 101 2 15 chr12 75477262 75478115 -45779415 - Lx LINE L1 0 6654 5813 7 1160 1049 224 10 47 chr12 75478816 75479093 -45778437 + Lx9 LINE L1 6910 7321 -323 7 1160 298 156 180 40 chr12 75479160 75479260 -45778270 + Lx9 LINE L1 7524 7637 -7 7 1160 246 128 0 0 chr12 75481061 75481100 -45776430 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1160 379 291 68 0 chr12 75481193 75481296 -45776234 - PB1D7 SINE Alu -10 110 1 7 1160 566 242 6 36 chr12 75481319 75481486 -45776044 - L1M2 LINE L1 -2191 3952 3791 7 1160 1827 278 88 20 chr12 75481485 75482535 -45774995 + L1MA7 LINE L1 4749 5869 -422 7 1160 461 239 11 0 chr12 75482742 75482834 -45774696 - PB1D10 SINE Alu -7 110 18 8 1160 919 319 81 92 chr12 75482893 75484013 -45773517 + MLT1D-int LTR MaLR 343 1489 0 8 1160 394 189 124 21 chr12 75484316 75484413 -45773117 + MLT1D LTR MaLR 399 505 0 8 1160 2151 218 51 65 chr12 75484413 75484988 -45772542 + RMER19C LTR ERVK 12 611 0 8 1160 893 202 0 141 chr12 75485526 75485768 -45771762 + URR1B DNA MER1_type 17 224 -1 8 1160 396 0 0 0 chr12 75486269 75486313 -45771217 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1160 834 207 0 0 chr12 75486512 75486691 -45770839 + (TA)n Simple_repeat Simple_repeat 2 180 0 8 1160 695 308 73 40 chr12 75486724 75487052 -45770478 - Lx8 LINE L1 -207 7266 6928 8 1160 641 281 181 17 chr12 75487037 75487375 -45770155 - Lx8 LINE L1 -828 6645 6250 8 1160 597 241 60 8 chr12 75487386 75487520 -45770010 - ID_B1 SINE B4 0 224 84 8 1160 192 300 57 0 chr12 75487986 75488056 -45769474 - MER5A DNA MER1_type -47 142 69 8 1160 216 250 235 0 chr12 75488248 75488316 -45769214 + MIR SINE MIR 56 139 -123 8 1160 4325 23 0 0 chr12 75488536 75489195 -45768335 - L1Md_T LINE L1 -497 6085 5427 8 1160 4339 80 0 0 chr12 75489195 75489730 -45767800 + L1Md_T LINE L1 6048 6582 0 8 1160 569 292 83 32 chr12 75490191 75490407 -45767123 - MLT1B LTR MaLR -11 379 153 8 1160 962 283 38 26 chr12 75491308 75491573 -45765957 + B4 SINE B4 6 273 -19 8 1160 275 146 0 18 chr12 75491580 75491636 -45765894 + CT-rich Low_complexity Low_complexity 4 58 0 8 1160 1517 134 9 9 chr12 75492061 75492286 -45765244 + URR1B DNA MER1_type 1 225 0 8 1160 442 46 31 0 chr12 75492324 75492389 -45765141 + (TC)n Simple_repeat Simple_repeat 1 67 0 8 1160 204 239 22 0 chr12 75492389 75492435 -45765095 + CT-rich Low_complexity Low_complexity 3 49 0 8 1160 206 216 0 0 chr12 75492444 75492481 -45765049 + (CCTA)n Simple_repeat Simple_repeat 1 37 0 8 1160 200 86 29 0 chr12 75492488 75492523 -45765007 + (CATA)n Simple_repeat Simple_repeat 2 37 0 8 1160 642 272 17 23 chr12 75493277 75493454 -45764076 + B4A SINE B4 1 176 -116 8 1160 347 286 120 10 chr12 75494314 75494522 -45763008 - Lx7 LINE L1 -78 7566 7336 8 1160 239 382 38 8 chr12 75495525 75495657 -45761873 + MIRb SINE MIR 120 255 -13 8 1160 785 263 66 0 chr12 75495753 75495966 -45761564 + B4A SINE B4 1 227 -65 8 1160 931 276 79 18 chr12 75496004 75496501 -45761029 - Lx7 LINE L1 -1663 5981 5420 8 1160 375 270 11 0 chr12 75496485 75496574 -45760956 + Lx8 LINE L1 7047 7136 -337 8 1160 305 297 211 0 chr12 75496774 75496902 -45760628 - HAL1-3A_ME LINE L1 -420 2438 2284 8 1160 251 341 0 0 chr12 75496909 75496997 -45760533 + CT-rich Low_complexity Low_complexity 3 90 0 8 1161 828 237 10 43 chr12 75499234 75499441 -45758089 - Lx9 LINE L1 -227 7417 7218 8 1161 498 147 60 107 chr12 75499438 75499606 -45757924 + Lx9 LINE L1 7477 7636 -8 8 1161 745 291 95 22 chr12 75499637 75499995 -45757535 + L1MB3 LINE L1 5734 6117 -66 8 1161 260 296 14 0 chr12 75500864 75500935 -45756595 - Tigger5 DNA MER2_type -2181 225 154 1 1161 669 254 21 0 chr12 75501036 75501220 -45756310 - MLT2B2 LTR ERVL -51 516 328 2 1161 613 141 16 32 chr12 75501244 75501369 -45756161 + RMER1B Other Other 939 1061 -5 3 1161 308 105 35 0 chr12 75501886 75501943 -45755587 + (TCCCC)n Simple_repeat Simple_repeat 4 62 0 4 1161 540 281 101 0 chr12 75503249 75503448 -45754082 + ID_B1 SINE B4 2 220 -4 5 1161 207 167 0 0 chr12 75503494 75503536 -45753994 + GA-rich Low_complexity Low_complexity 3 44 0 6 1161 238 218 53 35 chr12 75503939 75503996 -45753534 + MER45R DNA Tip100 328 385 -1196 7 1161 7948 63 8 6 chr12 75504013 75505350 -45752180 - L1Md_F2 LINE L1 0 6582 5248 8 1161 495 0 0 0 chr12 75505350 75505405 -45752125 + (TA)n Simple_repeat Simple_repeat 2 56 0 9 1161 6511 67 17 0 chr12 75505405 75505603 -45751927 - L1Md_F2 LINE L1 -636 5247 5037 8 1161 1099 133 77 5 chr12 75505604 75505800 -45751730 - RMER4B LTR ERVK -360 225 16 1 1161 7950 82 1 1 chr12 75506066 75507661 -45749869 - L1_Mus1 LINE L1 0 6567 4971 1 1161 929 244 24 19 chr12 75508032 75508241 -45749289 - ID_B1 SINE B4 -4 220 11 1 1161 790 291 106 26 chr12 75509633 75509944 -45747586 - Lx8 LINE L1 -248 7225 6890 1 1161 272 237 26 0 chr12 75510006 75510082 -45747448 + Lx8 LINE L1 7394 7471 -2 1 1161 414 0 0 0 chr12 75511861 75511907 -45745623 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1161 768 117 0 0 chr12 75511907 75512052 -45745478 + (GA)n Simple_repeat Simple_repeat 1 145 0 1 1161 354 100 12 48 chr12 75512086 75512170 -45745360 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 1 1161 2118 219 58 17 chr12 75512554 75513074 -45744456 - Lx7 LINE L1 0 7696 7156 1 1161 1146 205 127 4 chr12 75513074 75513333 -45744197 + Lx7 LINE L1 6875 7165 -531 1 1161 310 284 22 43 chr12 75513666 75513758 -45743772 + 5S rRNA rRNA 1 90 -31 1 1161 498 289 15 7 chr12 75514348 75514484 -45743046 - MLT1B LTR MaLR 0 390 254 2 1161 311 271 26 53 chr12 75514514 75514627 -45742903 - MLT1B LTR MaLR -261 129 20 2 1161 381 148 0 0 chr12 75515071 75515152 -45742378 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1161 579 15 0 0 chr12 75516003 75516071 -45741459 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1161 484 219 22 2 chr12 75516099 75516206 -45741324 - B1F2 SINE Alu -12 108 1 2 1161 253 247 61 20 chr12 75516643 75516742 -45740788 + CT-rich Low_complexity Low_complexity 2 104 0 2 1161 7999 111 30 2 chr12 75517568 75519445 -45738085 - L1_Mus4 LINE L1 -1 6635 4690 2 1161 3790 126 22 63 chr12 75519445 75519965 -45737565 + L1_Mus4 LINE L1 4084 4600 -1283 2 1161 1302 54 0 0 chr12 75519965 75520112 -45737418 + B1_Mus1 SINE Alu 2 148 0 2 1161 3790 126 22 63 chr12 75520112 75520277 -45737253 + L1_Mm LINE L1 4601 4741 -1142 2 1161 500 232 28 9 chr12 75520299 75520417 -45737113 + B1_Mur2 SINE Alu 2 121 -28 2 1161 684 103 0 0 chr12 75520585 75520692 -45736838 + (CA)n Simple_repeat Simple_repeat 2 108 0 2 1161 234 143 0 0 chr12 75520702 75520751 -45736779 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1161 1008 272 116 66 chr12 75520752 75521468 -45736062 - L1M2 LINE L1 -789 5354 4603 3 1161 390 334 132 19 chr12 75521490 75521908 -45735622 - L1_Mur3 LINE L1 -3303 2577 2113 3 1161 207 0 0 0 chr12 75522947 75522970 -45734560 + (TCC)n Simple_repeat Simple_repeat 1 23 0 3 1161 266 313 70 10 chr12 75523025 75523125 -45734405 - Lx8 LINE L1 -409 7064 6959 3 1161 761 301 7 83 chr12 75523155 75523445 -45734085 - Lx8 LINE L1 -505 6968 6701 3 1161 5104 51 0 0 chr12 75523507 75524116 -45733414 + L1_Mm LINE L1 5001 5609 -274 3 1161 3740 18 0 2 chr12 75524116 75524513 -45733017 + MTA_Mm LTR MaLR 1 396 0 3 1161 219 146 20 40 chr12 75524580 75524630 -45732900 + T-rich Low_complexity Low_complexity 2 50 0 3 1161 262 200 0 48 chr12 75524632 75524695 -45732835 - RMER15 LTR ERVL -113 462 403 3 1161 381 314 51 0 chr12 75524720 75524857 -45732673 - Lx8 LINE L1 -258 7215 7072 3 1161 413 304 58 10 chr12 75524981 75525084 -45732446 - PB1D10 SINE Alu -9 108 1 3 1161 1032 209 61 10 chr12 75525243 75525441 -45732089 - B3 SINE B2 -7 209 2 4 1161 2158 315 107 44 chr12 75525467 75527294 -45730236 - L1MC3 LINE L1 -32 7753 5812 4 1161 873 289 36 5 chr12 75527337 75527556 -45729974 - B4A SINE B4 -3 289 64 4 1161 485 342 102 35 chr12 75527667 75528128 -45729402 - L1MEg LINE L1 -4548 1652 1200 4 1161 526 39 26 0 chr12 75528615 75528692 -45728838 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1161 362 295 27 61 chr12 75528751 75528899 -45728631 - B4A SINE B4 -114 178 36 4 1161 325 337 0 0 chr12 75529009 75529110 -45728420 + GA-rich Low_complexity Low_complexity 1 101 0 4 1161 247 284 13 63 chr12 75529932 75530011 -45727519 - MLT1F LTR MaLR -103 445 371 4 1161 8195 75 56 31 chr12 75530200 75531244 -45726286 - Lx3_Mus LINE L1 0 7009 5921 4 1161 1062 107 0 0 chr12 75531244 75531403 -45726127 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 4 1161 8195 75 56 31 chr12 75531403 75531497 -45726033 - Lx3_Mus LINE L1 -1089 5920 5842 4 1161 2129 52 0 0 chr12 75531497 75531748 -45725782 + Lx3_Mus LINE L1 5595 5845 -1164 4 1161 347 314 109 21 chr12 75532206 75532398 -45725132 + MLT1B LTR MaLR 2 210 -180 5 1161 1775 34 0 0 chr12 75532398 75532614 -45724916 + L1_Mus1 LINE L1 6357 6653 -1 5 1161 230 271 0 0 chr12 75532615 75532674 -45724856 + A-rich Low_complexity Low_complexity 1 59 0 5 1161 307 311 48 16 chr12 75532674 75532798 -45724732 + MLT1B LTR MaLR 247 374 0 5 1161 465 19 0 0 chr12 75533002 75533056 -45724474 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1161 477 0 0 0 chr12 75533056 75533108 -45724422 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1161 270 136 0 0 chr12 75533232 75533276 -45724254 + (TCC)n Simple_repeat Simple_repeat 3 46 0 5 1161 320 77 19 0 chr12 75533622 75533674 -45723856 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1161 318 26 0 0 chr12 75533886 75533925 -45723605 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1161 546 291 96 27 chr12 75533925 75534112 -45723418 - B4A SINE B4 -23 269 70 5 1161 385 273 77 47 chr12 75534226 75534435 -45723095 + MLT1A LTR MaLR 1 248 -126 5 1161 387 292 198 35 chr12 75534559 75534761 -45722769 + B4A SINE B4 2 236 -56 6 1161 432 55 0 0 chr12 75534769 75534824 -45722706 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1161 387 0 0 0 chr12 75534947 75534990 -45722540 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1161 201 121 0 0 chr12 75534996 75535029 -45722501 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1161 348 312 144 30 chr12 75535346 75535617 -45721913 - L2a LINE L2 -211 3215 2914 6 1161 267 133 0 0 chr12 75535675 75535720 -45721810 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1161 563 287 127 24 chr12 75535753 75536030 -45721500 - B4 SINE B4 -15 277 4 6 1161 719 271 120 5 chr12 75536030 75536237 -45721293 - B4A SINE B4 -60 232 2 6 1161 289 329 80 7 chr12 75536311 75536461 -45721069 + MER5A1 DNA MER1_type 2 162 -4 6 1161 233 365 15 31 chr12 75536645 75536775 -45720755 + MLT1J1 LTR MaLR 72 199 -245 6 1161 302 253 12 37 chr12 75537040 75537122 -45720408 + ID4_ SINE ID 4 83 0 7 1161 255 275 28 38 chr12 75538614 75538720 -45718810 + MTEa LTR MaLR 275 379 0 7 1161 303 344 103 15 chr12 75538749 75538944 -45718586 - L2b LINE L2 -214 3161 2950 7 1161 8267 101 7 17 chr12 75539018 75541087 -45716443 + L1_Mus3 LINE L1 4603 6638 0 7 1161 7272 47 1 0 chr12 75541091 75542024 -45715506 - L1Md_F2 LINE L1 -646 5936 5003 7 1161 4645 63 0 7 chr12 75542024 75542587 -45714943 + L1Md_F2 LINE L1 6024 6582 0 7 1161 24 0 0 0 chr12 75543063 75543087 -45714443 + AT_rich Low_complexity Low_complexity 1 24 0 7 1161 254 314 0 0 chr12 75544333 75544419 -45713111 - L1MA4 LINE L1 -368 5932 5847 7 1161 232 243 13 79 chr12 75544425 75544501 -45713029 - L1_Rod LINE L1 -256 5591 5521 7 1161 395 343 62 79 chr12 75544852 75545257 -45712273 - HAL1 LINE L1 -1014 1493 1096 7 1161 291 185 57 32 chr12 75545280 75545403 -45712127 - Lx6 LINE L1 -11 7449 7324 7 1161 2006 239 5 28 chr12 75545453 75545880 -45711650 - Lx6 LINE L1 -64 7396 6980 8 1161 4502 142 33 36 chr12 75545887 75546645 -45710885 - RMER6A LTR ERVK 0 756 1 8 1161 540 288 151 11 chr12 75547610 75547789 -45709741 + B3 SINE B2 12 215 -1 8 1161 1747 189 185 66 chr12 75547966 75548436 -45709094 + RLTR11A2 LTR ERVK 2 527 0 8 1161 963 250 20 0 chr12 75548437 75548637 -45708893 - B3 SINE B2 -10 206 3 8 1161 282 284 26 105 chr12 75549127 75549241 -45708289 + MLT1C LTR MaLR 6 110 -357 8 1161 359 282 44 26 chr12 75549308 75549421 -45708109 - PB1D10 SINE Alu -2 115 1 8 1161 274 245 0 0 chr12 75549377 75549426 -45708104 - B4A SINE B4 -163 129 81 8 1161 243 290 16 0 chr12 75551573 75551635 -45705895 + CT-rich Low_complexity Low_complexity 4 66 0 8 1161 246 289 166 29 chr12 75553971 75554027 -45703503 - CYRA11_Mm Unknown Y-chromosome -225 392 237 8 1161 517 123 0 0 chr12 75554027 75554108 -45703422 + URR1B DNA MER1_type 83 163 -62 9 1161 201 74 0 0 chr12 75554550 75554577 -45702953 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 9 1161 261 0 0 0 chr12 75555178 75555207 -45702323 + (TATG)n Simple_repeat Simple_repeat 2 30 0 9 1161 650 75 11 0 chr12 75555492 75555585 -45701945 + (TC)n Simple_repeat Simple_repeat 1 94 0 9 1161 956 255 107 15 chr12 75556784 75557047 -45700483 + B4A SINE B4 1 287 -5 9 1161 237 234 19 0 chr12 75557077 75557235 -45700295 + (CA)n Simple_repeat Simple_repeat 2 162 0 9 1161 376 285 7 14 chr12 75557247 75557393 -45700137 + (CA)n Simple_repeat Simple_repeat 2 146 0 9 1161 255 177 0 0 chr12 75557409 75557471 -45700059 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1161 512 306 83 105 chr12 75558519 75558601 -45698929 - MLT1A LTR MaLR 0 374 289 9 1161 809 141 277 0 chr12 75558601 75558778 -45698752 - URR1A DNA MER1_type 0 226 1 9 1161 512 306 83 105 chr12 75558778 75559057 -45698473 - MLT1A LTR MaLR -86 288 21 9 1161 291 179 0 0 chr12 75561278 75561345 -45696185 + (CATA)n Simple_repeat Simple_repeat 2 68 0 9 1161 472 269 15 8 chr12 75561702 75561833 -45695697 + Lx7 LINE L1 6706 6837 -859 9 1161 2052 165 113 154 chr12 75562033 75562436 -45695094 + RMER4B LTR ERVK 1 338 -247 1 1161 1288 39 0 10 chr12 75562436 75562642 -45694888 + (GAA)n Simple_repeat Simple_repeat 1 204 0 1 1161 2052 165 113 154 chr12 75562642 75562847 -45694683 + RMER4B LTR ERVK 339 584 -1 1 1161 966 61 0 0 chr12 75563003 75563135 -45694395 + L1Md_A LINE L1 6439 6570 -12 1 1161 1031 139 209 0 chr12 75563728 75563915 -45693615 + URR1A DNA MER1_type 1 226 0 1 1161 3814 50 19 0 chr12 75564483 75564958 -45692572 - L1Md_F3 LINE L1 -14 6570 6087 1 1161 939 126 52 0 chr12 75565105 75565240 -45692290 - B1_Mus1 SINE Alu -5 143 2 1 1161 5075 78 13 3 chr12 75565464 75566224 -45691306 - L1_Mur1 LINE L1 -1499 4387 3620 1 1161 9840 73 21 6 chr12 75566224 75568085 -45689445 + Lx3_Mus LINE L1 5113 7000 -9 1 1161 360 143 0 0 chr12 75568885 75568955 -45688575 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1161 41 0 0 0 chr12 75569193 75569234 -45688296 + AT_rich Low_complexity Low_complexity 1 41 0 1 1161 311 362 0 62 chr12 75569494 75569656 -45687874 - Lx8 LINE L1 -153 7320 7169 1 1161 992 219 58 47 chr12 75569667 75569925 -45687605 + RLTR40 LTR ERVK 557 817 0 1 1161 1972 297 20 34 chr12 75569942 75570684 -45686846 - Lx9 LINE L1 -382 7262 6531 1 1161 266 0 29 0 chr12 75570687 75570721 -45686809 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1161 5938 89 2 7 chr12 75570794 75571619 -45685911 - Lx3_Mus LINE L1 -8 7001 6181 1 1161 7744 47 0 0 chr12 75571619 75572604 -45684926 - L1Md_F2 LINE L1 -1 6581 5597 1 1161 1091 125 70 0 chr12 75572602 75572802 -45684728 - Lx3_Mus LINE L1 -809 6200 5987 1 1161 251 300 100 0 chr12 75572831 75572931 -45684599 - Lx9 LINE L1 -1168 6476 6367 1 1161 223 196 19 38 chr12 75572956 75573009 -45684521 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 1 1161 805 256 14 50 chr12 75573024 75573246 -45684284 - B3 SINE B2 -1 215 2 1 1161 300 266 45 9 chr12 75573434 75573544 -45683986 - Lx9 LINE L1 -1721 5923 5810 1 1161 7655 80 5 3 chr12 75573579 75574936 -45682594 - L1_Mus3 LINE L1 0 6638 5274 1 1161 4478 139 8 0 chr12 75574934 75575690 -45681840 + L1_Mus3 LINE L1 4524 5285 -598 1 1161 1652 179 99 13 chr12 75575690 75576074 -45681456 - MTC LTR MaLR -4 417 1 1 1161 301 179 0 56 chr12 75576078 75576149 -45681381 - Lx4A LINE L1 -1281 5777 5711 1 1161 4144 201 133 13 chr12 75576186 75576645 -45680885 - Lx6 LINE L1 -12 7448 6924 1 1161 477 0 0 0 chr12 75576645 75576698 -45680832 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1161 212 0 36 0 chr12 75576698 75576725 -45680805 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1161 4144 201 133 13 chr12 75576725 75576812 -45680718 - Lx6 LINE L1 -537 6923 6795 1 1161 3258 41 10 2 chr12 75576812 75577205 -45680325 - MTA_Mm LTR MaLR 0 396 1 1 1161 4144 201 133 13 chr12 75577205 75577605 -45679925 - Lx6 LINE L1 -666 6794 6389 1 1161 351 368 76 0 chr12 75580385 75580529 -45677001 - MER2 DNA MER2_type -189 156 2 1 1161 406 0 37 0 chr12 75580618 75580672 -45676858 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1161 200 311 81 0 chr12 75580703 75580777 -45676753 - MIRb SINE MIR -168 100 21 1 1161 236 309 82 57 chr12 75581502 75581660 -45675870 + MER20 DNA MER1_type 55 216 -3 1 1161 297 333 117 0 chr12 75582016 75582136 -45675394 - MER94 DNA AcHobo 0 134 1 1 1161 787 270 78 57 chr12 75583040 75583323 -45674207 - MTEa LTR MaLR -5 374 86 1 1161 366 159 0 60 chr12 75583809 75583876 -45673654 - MTEa LTR MaLR -11 368 306 1 1161 729 53 0 0 chr12 75584340 75584434 -45673096 + (CACAC)n Simple_repeat Simple_repeat 2 95 0 1 1161 258 215 69 7 chr12 75584467 75584612 -45672918 + (CATAT)n Simple_repeat Simple_repeat 4 157 0 1 1161 345 305 25 0 chr12 75584789 75584906 -45672624 - MTEa LTR MaLR -90 289 151 1 1161 215 318 84 48 chr12 75584930 75585077 -45672453 - MIR SINE MIR -83 185 37 1 1161 1023 298 101 0 chr12 75585940 75586266 -45671264 + MTD LTR MaLR 59 417 -2 1 1161 206 234 21 0 chr12 75586311 75586358 -45671172 + CT-rich Low_complexity Low_complexity 1 48 0 1 1161 297 320 58 32 chr12 75586378 75586533 -45670997 - RSINE1 SINE B4 -2 163 5 1 1161 2910 161 59 50 chr12 75588159 75588677 -45668853 - RMER4B LTR ERVK 0 585 41 1 1161 302 91 18 0 chr12 75588677 75588732 -45668798 + (TTG)n Simple_repeat Simple_repeat 2 57 0 1 1161 2910 161 59 50 chr12 75588732 75588793 -45668737 - RMER4B LTR ERVK -545 40 1 1 1161 782 308 81 15 chr12 75588793 75589309 -45668221 - L1M2 LINE L1 -15 5832 5278 1 1161 1677 220 42 32 chr12 75589314 75589694 -45667836 + MTD LTR MaLR 1 384 -35 1 1161 349 222 33 11 chr12 75589766 75589880 -45667650 - L1M2 LINE L1 -875 5265 5103 1 1161 632 290 135 49 chr12 75589903 75590344 -45667186 + RMER13A LTR ERVK 18 550 -77 1 1161 1227 289 52 0 chr12 75590626 75591103 -45666427 - L1M2 LINE L1 -1142 5001 4500 1 1161 25 0 0 0 chr12 75591624 75591649 -45665881 + AT_rich Low_complexity Low_complexity 1 25 0 1 1161 186 380 93 22 chr12 75591660 75591843 -45665687 - MIRc SINE MIR -10 258 63 1 1161 279 113 94 0 chr12 75592020 75592073 -45665457 - Lx8 LINE L1 -29 7444 7387 1 1161 183 80 0 0 chr12 75593786 75593811 -45663719 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 1 1161 516 317 14 0 chr12 75593811 75593956 -45663574 - B1_Mur1 SINE Alu 0 149 3 1 1161 372 197 22 34 chr12 75594197 75594286 -45663244 - PB1D10 SINE Alu -6 114 19 1 1161 264 185 0 0 chr12 75594421 75594475 -45663055 + CT-rich Low_complexity Low_complexity 3 56 0 1 1161 992 156 0 6 chr12 75594497 75594678 -45662852 + CT-rich Low_complexity Low_complexity 1 180 0 1 1161 182 118 29 0 chr12 75594680 75594714 -45662816 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1161 315 0 0 0 chr12 75594804 75594839 -45662691 + (TTA)n Simple_repeat Simple_repeat 3 37 0 1 1161 27 0 0 0 chr12 75594891 75594918 -45662612 + AT_rich Low_complexity Low_complexity 1 27 0 1 1161 921 99 99 0 chr12 75595047 75595208 -45662322 - L1Md_F2 LINE L1 -2 6580 6404 1 1161 573 336 77 63 chr12 75595258 75595761 -45661769 - MLT1F2 LTR MaLR -23 537 5 1 1161 225 317 79 24 chr12 75596564 75596690 -45660840 - MER82 DNA MER2_type -519 134 2 1 1161 547 277 36 68 chr12 75596833 75597054 -45660476 - ORR1D2 LTR MaLR -4 366 153 1 1161 1385 288 208 20 chr12 75598472 75599474 -45658056 - Lx8 LINE L1 -57 7416 6228 1 1161 180 0 0 0 chr12 75599716 75599736 -45657794 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 1 1161 402 249 14 43 chr12 75600752 75600964 -45656566 - Lx8 LINE L1 -1676 5968 5761 1 1161 844 307 66 12 chr12 75601043 75601376 -45656154 + MLT1A0 LTR MaLR 7 357 -8 1 1161 327 49 0 0 chr12 75601830 75601871 -45655659 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1161 481 342 20 0 chr12 75601877 75602023 -45655507 - RSINE1 SINE B4 -13 152 4 1 1161 533 326 79 63 chr12 75602054 75602572 -45654958 - L1MD LINE L1 -2475 3671 3142 1 1161 386 220 47 65 chr12 75602641 75602748 -45654782 + PB1 SINE Alu 21 125 -2 1 1161 214 308 39 0 chr12 75602772 75602824 -45654706 + ID4_ SINE ID 17 70 -13 1 1161 186 164 0 52 chr12 75603538 75603596 -45653934 + T-rich Low_complexity Low_complexity 2 56 0 1 1161 222 191 0 0 chr12 75604246 75604293 -45653237 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1161 27 0 0 0 chr12 75604544 75604571 -45652959 + AT_rich Low_complexity Low_complexity 1 27 0 1 1161 1547 94 44 49 chr12 75604577 75604887 -45652643 + BGLII_Mus LTR ERVK 1 422 0 1 1161 5168 73 7 1 chr12 75604944 75605629 -45651901 + L1_Mus3 LINE L1 5950 6638 0 1 1161 698 280 92 25 chr12 75606273 75606588 -45650942 - Lx8 LINE L1 -11 7462 7127 1 1161 947 158 106 69 chr12 75609340 75609558 -45647972 + URR1A DNA MER1_type 1 226 0 1 1161 239 293 62 83 chr12 75609837 75609982 -45647548 + ORR1E LTR MaLR 97 238 -121 1 1161 260 345 26 26 chr12 75610085 75610237 -45647293 - MIR3 SINE MIR -56 152 1 1 1161 281 344 33 0 chr12 75611146 75611236 -45646294 + PB1D10 SINE Alu 3 95 -22 1 1161 914 292 17 51 chr12 75611337 75611633 -45645897 - B4A SINE B4 -2 290 5 1 1161 4449 228 57 69 chr12 75611654 75613224 -45644306 + L1_Rod LINE L1 2563 4112 -1735 1 1161 736 30 29 10 chr12 75613561 75613663 -45643867 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 1 1161 294 29 0 0 chr12 75613726 75613761 -45643769 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1161 970 251 100 45 chr12 75613771 75614203 -45643327 - L1MA7 LINE L1 -129 6162 5692 1 1161 225 0 0 0 chr12 75615061 75615086 -45642444 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1161 483 157 0 0 chr12 75615190 75615273 -45642257 + Lx2A1 LINE L1 6913 6995 -13 1 1161 2289 320 47 29 chr12 75615861 75616762 -45640768 + Lx8 LINE L1 6071 6987 -486 1 1161 26 30 0 0 chr12 75617865 75617898 -45639632 + AT_rich Low_complexity Low_complexity 1 33 0 1 1161 641 246 145 56 chr12 75617898 75618087 -45639443 - Lx7 LINE L1 0 7696 7455 1 1161 445 53 53 0 chr12 75618087 75618162 -45639368 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 1 1161 641 246 145 56 chr12 75618162 75618364 -45639166 - Lx7 LINE L1 -242 7454 7270 1 1161 1000 287 138 43 chr12 75618829 75619657 -45637873 + L1MC3 LINE L1 6863 7768 -17 1 1161 855 294 107 22 chr12 75619760 75620295 -45637235 - L1MB1 LINE L1 -61 6107 5528 1 1161 294 309 77 19 chr12 75620536 75620691 -45636839 - MER89-int LTR ERV1 -905 5896 5733 1 1161 704 275 131 14 chr12 75621103 75621454 -45636076 - MER89-int LTR ERV1 -1531 5270 4879 1 1161 256 333 119 19 chr12 75622067 75622226 -45635304 - MER89-int LTR ERV1 -2036 4765 4591 1 1161 1750 163 177 24 chr12 75622314 75622850 -45634680 + ORR1A4-int LTR MaLR 1 368 -10 1 1161 18498 135 16 11 chr12 75622850 75625681 -45631849 + MERVL_2A-int LTR ERVL 835 3680 -2081 1 1161 1817 145 68 12 chr12 75625693 75626015 -45631515 - ORR1B1 LTR MaLR -14 380 41 1 1161 214 229 14 41 chr12 75626481 75626554 -45630976 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1161 625 343 52 49 chr12 75626559 75626847 -45630683 - B4A SINE B4 0 292 4 1 1161 476 235 110 20 chr12 75627500 75627700 -45629830 + MER89-int LTR ERV1 1720 1937 -4864 1 1161 474 282 113 30 chr12 75627881 75628049 -45629481 + MER20 DNA MER1_type 33 214 -5 1 1162 33 0 0 0 chr12 75629148 75629181 -45628349 + AT_rich Low_complexity Low_complexity 1 33 0 1 1162 320 316 0 50 chr12 75629194 75629294 -45628236 - B3A SINE B2 -16 182 88 1 1162 428 287 57 8 chr12 75629290 75629418 -45628112 - B3A SINE B2 -61 134 1 1 1162 186 280 65 26 chr12 75629563 75629640 -45627890 - L2c LINE L2 -165 3222 3143 1 1162 739 248 150 17 chr12 75630910 75631148 -45626382 - ORR1D2 LTR MaLR -83 276 1 2 1162 485 303 0 27 chr12 75631376 75631525 -45626005 - MLT1A0 LTR MaLR -220 145 1 2 1162 274 269 48 34 chr12 75633568 75633714 -45623816 - L1MCc LINE L1 -4900 1523 1376 2 1162 211 277 0 0 chr12 75633792 75633839 -45623691 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1162 180 200 0 0 chr12 75633854 75633899 -45623631 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1162 688 88 0 0 chr12 75634018 75634120 -45623410 + L1_Mus2 LINE L1 6431 6532 -34 2 1162 261 98 0 0 chr12 75635124 75635165 -45622365 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1162 198 191 0 0 chr12 75635165 75635207 -45622323 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1162 447 279 93 83 chr12 75635207 75635582 -45621948 + L1MD LINE L1 4637 5015 -1131 2 1162 449 284 105 57 chr12 75635742 75636093 -45621437 + L1MD LINE L1 5279 5646 -596 2 1162 242 312 202 24 chr12 75636676 75636889 -45620641 - MIRb SINE MIR -14 254 4 2 1162 2268 108 9 56 chr12 75637643 75638073 -45619457 + RMER17C LTR ERVK 1 410 0 2 1162 816 226 13 94 chr12 75638584 75638775 -45618755 + B3 SINE B2 2 181 -35 2 1162 1470 82 0 5 chr12 75638775 75638971 -45618559 - B2_Mm2 SINE B2 0 195 1 2 1162 816 226 13 94 chr12 75638971 75639013 -45618517 + B3 SINE B2 182 216 0 2 1162 245 278 27 27 chr12 75639047 75639121 -45618409 + MIR SINE MIR 182 255 -7 2 1162 353 198 33 0 chr12 75639653 75639744 -45617786 - L1MA10 LINE L1 -1 6333 6240 2 1162 392 283 49 24 chr12 75639795 75639985 -45617545 - L1ME1 LINE L1 -143 6031 5836 2 1162 1231 191 73 13 chr12 75639956 75640236 -45617294 + Lx9 LINE L1 7192 7492 -152 2 1162 366 80 0 0 chr12 75640236 75640286 -45617244 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2 1162 1231 191 73 13 chr12 75640286 75640318 -45617212 + Lx9 LINE L1 7493 7523 -121 2 1162 21 0 0 0 chr12 75640327 75640348 -45617182 + AT_rich Low_complexity Low_complexity 1 21 0 2 1162 582 192 14 7 chr12 75640354 75640501 -45617029 + Lx9 LINE L1 7495 7642 -2 2 1162 892 303 58 6 chr12 75640582 75641068 -45616462 - L1ME1 LINE L1 -389 5790 5255 2 1162 388 330 70 54 chr12 75641141 75641587 -45615943 - L1ME1 LINE L1 -1310 4836 4377 2 1162 22 0 0 0 chr12 75641600 75641622 -45615908 + AT_rich Low_complexity Low_complexity 1 22 0 2 1162 253 217 0 16 chr12 75641628 75641689 -45615841 - L1ME1 LINE L1 -1794 4352 4293 2 1162 791 318 96 6 chr12 75641956 75642675 -45614855 - L1MC LINE L1 -2194 3952 3169 2 1162 596 331 93 4 chr12 75642748 75642897 -45614633 - B4A SINE B4 -4 288 121 2 1162 477 34 0 0 chr12 75642897 75642956 -45614574 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1162 596 331 93 4 chr12 75642956 75643064 -45614466 - B4A SINE B4 -172 120 9 2 1162 2192 226 33 138 chr12 75643209 75643871 -45613659 + RMER19C LTR ERVK 1 593 -18 2 1162 1072 62 14 14 chr12 75644298 75644445 -45613085 - B1_Mm SINE Alu 0 147 1 2 1162 367 316 8 42 chr12 75644456 75644575 -45612955 - PB1D7 SINE Alu 0 120 6 2 1162 281 317 87 29 chr12 75644771 75644979 -45612551 - MIR SINE MIR -1 261 42 2 1162 1440 17 6 28 chr12 75646941 75647120 -45610410 - L1Md_F3 LINE L1 -397 6187 6013 2 1162 3146 32 3 3 chr12 75647120 75647500 -45610030 + L1Md_F3 LINE L1 6205 6584 0 2 1162 381 308 46 8 chr12 75647523 75647654 -45609876 - RMER30 DNA MER1_type -1 201 66 2 1162 715 358 131 9 chr12 75647977 75648406 -45609124 - LTR80A LTR ERVL -38 545 65 2 1162 869 181 6 0 chr12 75648561 75648738 -45608792 + CT-rich Low_complexity Low_complexity 3 180 0 2 1162 3461 281 39 23 chr12 75648841 75650033 -45607497 - Lx8 LINE L1 -341 7132 5931 2 1162 1107 254 84 16 chr12 75650030 75650433 -45607097 + Lx8 LINE L1 5447 5909 -1564 2 1162 26 30 0 0 chr12 75650522 75650555 -45606975 + AT_rich Low_complexity Low_complexity 1 33 0 2 1162 27 29 0 0 chr12 75650788 75650822 -45606708 + AT_rich Low_complexity Low_complexity 1 34 0 2 1162 835 194 6 0 chr12 75651182 75651352 -45606178 - Lx9 LINE L1 -171 7473 7303 2 1162 297 0 0 0 chr12 75651398 75651431 -45606099 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1162 180 0 0 0 chr12 75651435 75651455 -45606075 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1162 494 144 117 0 chr12 75652303 75652414 -45605116 + Lx3_Mus LINE L1 6885 7008 -1 2 1162 272 328 121 51 chr12 75653937 75654300 -45603230 - LTR52 LTR ERVL -2 419 1 2 1162 323 398 72 0 chr12 75654436 75654602 -45602928 + FordPrefect DNA Tip100 2 179 -1504 2 1162 378 0 0 0 chr12 75654779 75654821 -45602709 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1162 248 359 144 64 chr12 75654917 75655167 -45602363 + FordPrefect DNA Tip100 620 889 -794 2 1162 1380 292 72 29 chr12 75655209 75655542 -45601988 + FordPrefect DNA Tip100 964 1305 -378 2 1162 297 0 0 0 chr12 75655542 75655575 -45601955 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2 1162 1380 292 72 29 chr12 75655575 75655766 -45601764 + FordPrefect DNA Tip100 1306 1510 -173 2 1162 2201 198 26 68 chr12 75656648 75657234 -45600296 - RLTR31_Mm LTR ERVK 0 561 1 2 1162 1136 221 195 9 chr12 75657297 75657635 -45599895 + L1_Mur3 LINE L1 58 458 -7270 2 1162 2983 162 21 4 chr12 75657628 75658162 -45599368 + L1_Mur3 LINE L1 2444 2986 -2894 2 1162 448 259 183 0 chr12 75658162 75658293 -45599237 - ORR1E LTR MaLR -202 157 3 2 1162 24 0 0 0 chr12 75658722 75658746 -45598784 + AT_rich Low_complexity Low_complexity 1 24 0 2 1162 22 0 0 0 chr12 75659626 75659648 -45597882 + AT_rich Low_complexity Low_complexity 1 22 0 2 1162 304 277 0 57 chr12 75659843 75659931 -45597599 + B1F SINE Alu 67 149 0 2 1162 450 0 0 0 chr12 75660208 75660258 -45597272 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1162 21 0 0 0 chr12 75660761 75660782 -45596748 + AT_rich Low_complexity Low_complexity 1 21 0 2 1162 22 35 0 0 chr12 75660787 75660816 -45596714 + AT_rich Low_complexity Low_complexity 1 29 0 2 1162 3203 60 5 0 chr12 75660990 75661388 -45596142 - MTB LTR MaLR 0 400 1 2 1162 354 281 80 63 chr12 75661935 75662110 -45595420 + MIR SINE MIR 58 235 -27 2 1162 661 295 101 29 chr12 75662250 75662526 -45595004 + MLT2B1 LTR ERVL 9 304 -216 2 1162 254 253 21 21 chr12 75662652 75662749 -45594781 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 2 1162 380 355 61 43 chr12 75662749 75662979 -45594551 - MLT2B1 LTR ERVL -19 548 315 2 1162 2044 118 12 67 chr12 75664311 75664656 -45592874 + ORR1A3 LTR MaLR 1 326 0 2 1162 222 37 0 0 chr12 75665136 75665163 -45592367 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1162 756 149 11 22 chr12 75665671 75665788 -45591742 + (TA)n Simple_repeat Simple_repeat 1 115 0 2 1162 2497 88 124 34 chr12 75665788 75666224 -45591306 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1162 756 149 11 22 chr12 75666224 75666284 -45591246 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1162 250 233 17 0 chr12 75666492 75666552 -45590978 - B4A SINE B4 -231 61 1 2 1162 22 35 0 0 chr12 75666552 75666581 -45590949 + AT_rich Low_complexity Low_complexity 1 29 0 2 1162 2341 238 68 20 chr12 75666607 75667373 -45590157 + L1_Rod LINE L1 1920 2722 -3125 2 1162 294 179 0 0 chr12 75667393 75667449 -45590081 + GA-rich Low_complexity Low_complexity 2 57 0 2 1162 219 172 16 49 chr12 75667509 75667570 -45589960 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 2 1162 2535 94 53 0 chr12 75667571 75667912 -45589618 - RLTR10D LTR ERVK 0 359 1 2 1162 2514 102 3 0 chr12 75667912 75668264 -45589266 - IAP-d-int LTR ERVK 0 6542 6190 2 1162 33695 181 13 18 chr12 75668236 75674294 -45583236 - IAP-d-int LTR ERVK -358 6184 517 2 1162 4065 38 10 8 chr12 75674294 75674800 -45582730 - L1Md_F3 LINE L1 -2 6582 6076 2 1162 33695 173 12 16 chr12 75674800 75675305 -45582225 - IAP-d-int LTR ERVK -6026 516 3 2 1162 2560 85 53 0 chr12 75675307 75675648 -45581882 - RLTR10D LTR ERVK 0 359 1 2 1162 1673 245 72 101 chr12 75675724 75676583 -45580947 + L1_Rod LINE L1 3356 4189 -1658 2 1162 465 138 0 0 chr12 75676597 75676691 -45580839 + (TG)n Simple_repeat Simple_repeat 1 94 0 2 1162 1260 111 14 0 chr12 75677312 75677519 -45580011 + Lx LINE L1 6430 6639 -15 2 1162 528 238 177 27 chr12 75678409 75678629 -45578901 + Lx8 LINE L1 7082 7334 -139 2 1162 4692 30 0 0 chr12 75679020 75679595 -45577935 - L1_Mm LINE L1 -750 5133 4559 2 1162 5393 40 1 3 chr12 75679595 75680249 -45577281 + L1Md_T LINE L1 5930 6582 0 2 1162 726 317 122 21 chr12 75680407 75681104 -45576426 + L1MD2 LINE L1 3505 4271 -1875 2 1162 266 364 79 23 chr12 75681110 75681324 -45576206 - ORR1E LTR MaLR -133 226 1 2 1162 204 125 0 0 chr12 75681364 75681396 -45576134 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1162 1009 62 46 0 chr12 75681397 75681527 -45576003 + B1_Mus1 SINE Alu 1 136 -12 2 1162 459 0 0 0 chr12 75681539 75681590 -45575940 + (A)n Simple_repeat Simple_repeat 1 51 0 2 1162 395 338 74 26 chr12 75681631 75681778 -45575752 + L1MD2 LINE L1 5148 5307 -839 2 1162 4495 52 36 3 chr12 75681778 75682358 -45575172 + L1Md_F2 LINE L1 5983 6581 -1 2 1162 395 281 59 52 chr12 75682358 75682469 -45575061 + L1MD2 LINE L1 5308 5424 -935 2 1162 507 266 0 18 chr12 75682619 75682730 -45574800 - PB1D10 SINE Alu 0 117 9 2 1162 691 272 75 24 chr12 75682743 75683116 -45574414 - L1M2 LINE L1 -878 5265 4874 2 1162 352 275 127 12 chr12 75683159 75683446 -45574084 + L1MA4 LINE L1 5319 5645 -667 2 1162 406 234 94 7 chr12 75683489 75683627 -45573903 + L1MA4 LINE L1 5791 5940 -360 2 1162 424 303 106 95 chr12 75683678 75684049 -45573481 + L1MD2 LINE L1 5882 6269 -90 2 1162 1075 165 55 0 chr12 75684049 75684249 -45573281 - Lx2B LINE L1 -3 6997 6787 2 1162 424 303 106 95 chr12 75684249 75684329 -45573201 + L1MD2 LINE L1 6270 6338 -21 2 1162 26 30 0 0 chr12 75684794 75684827 -45572703 + AT_rich Low_complexity Low_complexity 1 33 0 2 1162 331 355 20 70 chr12 75685013 75685192 -45572338 - MIRb SINE MIR -75 193 17 2 1162 182 255 19 56 chr12 75686049 75686103 -45571427 + L2b LINE L2 3016 3067 -308 2 1162 932 199 13 62 chr12 75686766 75686991 -45570539 - RLTR40 LTR ERVK -35 782 569 2 1162 409 244 37 85 chr12 75686994 75687182 -45570348 - RLTR40 LTR ERVK -159 658 480 2 1162 483 182 0 24 chr12 75687627 75687751 -45569779 - Lx9 LINE L1 -2 7642 7522 2 1162 270 0 0 0 chr12 75687753 75687783 -45569747 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1162 3773 214 41 16 chr12 75687786 75688053 -45569477 - Lx9 LINE L1 -229 7415 7156 2 1162 1670 162 73 18 chr12 75688053 75688393 -45569137 + RLTR15 LTR ERVK 1 359 0 2 1162 3773 214 41 16 chr12 75688393 75688986 -45568544 - Lx9 LINE L1 -489 7155 6534 2 1162 2744 103 3 0 chr12 75689190 75689579 -45567951 + MTB LTR MaLR 1 390 -10 2 1162 224 337 0 0 chr12 75690928 75691011 -45566519 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 2 1162 1193 313 3 24 chr12 75691138 75691436 -45566094 + B4A SINE B4 1 292 0 2 1162 3399 32 86 16 chr12 75692921 75693365 -45564165 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1162 218 290 104 31 chr12 75696991 75697087 -45560443 + B1_Mus1 SINE Alu 40 142 -6 2 1162 187 277 18 29 chr12 75697185 75697356 -45560174 + (CATATA)n Simple_repeat Simple_repeat 4 172 0 2 1162 396 0 0 0 chr12 75697997 75698041 -45559489 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1162 236 186 88 0 chr12 75698704 75698806 -45558724 + (TA)n Simple_repeat Simple_repeat 1 111 0 2 1162 606 318 0 0 chr12 75700650 75700801 -45556729 + B3A SINE B2 1 151 -47 2 1162 528 89 0 0 chr12 75700804 75700883 -45556647 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1162 429 36 0 0 chr12 75700950 75701005 -45556525 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1162 637 330 41 62 chr12 75701078 75701640 -45555890 + L1MA9 LINE L1 5420 5969 -343 3 1162 1379 46 29 0 chr12 75704037 75704211 -45553319 + B2_Mm2 SINE B2 2 180 -15 3 1162 823 93 197 7 chr12 75704217 75704369 -45553161 + B2_Mm2 SINE B2 1 181 -14 3 1162 1144 61 0 45 chr12 75704379 75704533 -45552997 - B1_Mus2 SINE Alu 0 147 1 3 1162 25 31 0 0 chr12 75704533 75704565 -45552965 + AT_rich Low_complexity Low_complexity 1 32 0 3 1162 1560 288 112 5 chr12 75704565 75705145 -45552385 - Lx8 LINE L1 -266 7207 6566 3 1162 453 36 0 0 chr12 75705168 75705223 -45552307 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1162 344 188 40 50 chr12 75705226 75705327 -45552203 - Lx7 LINE L1 -1932 5764 5665 3 1162 28180 181 67 83 chr12 75705392 75706332 -45551198 + L1_Mus1 LINE L1 308 1259 -5379 3 1162 315 0 0 0 chr12 75706332 75706367 -45551163 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1162 28180 102 6 6 chr12 75706367 75710390 -45547140 + L1_Mus1 LINE L1 1260 5292 -591 3 1162 1039 122 0 0 chr12 75710390 75710537 -45546993 + B1_Mus2 SINE Alu 1 147 0 3 1162 28180 102 6 6 chr12 75710537 75710828 -45546702 + L1_Mus1 LINE L1 5293 5577 -306 3 1162 1069 90 14 0 chr12 75710830 75710975 -45546555 + B1_Mm SINE Alu 1 147 0 3 1162 366 114 0 0 chr12 75710986 75711056 -45546474 + (CAAAAA)n Simple_repeat Simple_repeat 1 70 0 3 1162 7442 58 6 0 chr12 75711082 75712056 -45545474 + L1_Mus1 LINE L1 5587 6566 -1 3 1162 258 277 0 0 chr12 75712070 75712135 -45545395 - Lx7 LINE L1 -2019 5677 5613 3 1162 596 288 30 23 chr12 75712220 75712483 -45545047 + RLTR15 LTR ERVK 1 265 -94 3 1162 938 276 42 17 chr12 75712552 75712972 -45544558 - Lx7 LINE L1 -788 5509 5046 3 1162 1089 281 96 14 chr12 75712975 75713494 -45544036 + L1M2 LINE L1 4505 5066 -1077 3 1162 340 312 85 73 chr12 75714047 75714389 -45543141 - MER44B DNA MER2_type -156 394 49 3 1162 21 71 0 0 chr12 75714566 75714608 -45542922 + AT_rich Low_complexity Low_complexity 1 42 0 3 1162 247 232 120 60 chr12 75714975 75715108 -45542422 - MLT1A1 LTR MaLR 0 408 268 3 1162 180 111 0 0 chr12 75715217 75715244 -45542286 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 3 1162 588 330 126 33 chr12 75715300 75715911 -45541619 - Lx7 LINE L1 -2229 3914 3235 3 1162 3479 84 0 13 chr12 75715911 75716452 -45541078 - L1Md_F2 LINE L1 0 6582 6103 3 1162 461 311 137 41 chr12 75716452 75716476 -45541054 - Lx7 LINE L1 -2912 3234 3210 3 1162 382 278 255 55 chr12 75716477 75716994 -45540536 - L1M2a LINE L1 -2990 4174 3555 3 1162 318 50 0 0 chr12 75717255 75717295 -45540235 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 1162 2730 69 0 20 chr12 75717418 75717771 -45539759 + ORR1A1 LTR MaLR 1 346 0 3 1162 645 366 84 64 chr12 75717895 75718165 -45539365 - Lx8 LINE L1 -247 7226 6963 3 1162 2466 67 0 0 chr12 75718165 75718479 -45539051 + L1Md_T LINE L1 6269 6582 0 3 1162 645 366 84 64 chr12 75718479 75718897 -45538633 - Lx8 LINE L1 -511 6962 6524 3 1162 292 302 0 11 chr12 75719023 75719110 -45538420 - L1M2a LINE L1 -7082 86 1 3 1162 6055 269 49 35 chr12 75719574 75721728 -45535802 + MYSERV6-int LTR ERVK 992 3175 -5784 3 1162 20342 19 0 0 chr12 75721738 75724107 -45533423 + L1Md_T LINE L1 3218 5586 -297 3 1162 8944 7 0 0 chr12 75724107 75725132 -45532398 + L1Md_T LINE L1 5587 6582 0 3 1162 7743 229 78 48 chr12 75725132 75728695 -45528835 + MYSERV16_I-int LTR ERVK 32 6509 -41 3 1162 1258 176 309 17 chr12 75728695 75729035 -45528495 + BGLII_B LTR ERVK 1 439 -2 3 1162 989 304 17 104 chr12 75729415 75729830 -45527700 - MTE2a LTR MaLR 0 379 1 3 1162 426 133 0 43 chr12 75729841 75729935 -45527595 + Lx LINE L1 6565 6654 0 3 1162 258 156 0 0 chr12 75730450 75730495 -45527035 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 3 1162 215 293 40 71 chr12 75730583 75730682 -45526848 + L2 LINE L2 2702 2797 -622 3 1162 225 0 0 0 chr12 75730682 75730707 -45526823 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1162 324 0 0 0 chr12 75730707 75730742 -45526788 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1162 255 189 0 0 chr12 75730798 75730851 -45526679 - L1MB1 LINE L1 -41 6148 6096 3 1162 370 379 48 48 chr12 75731259 75731489 -45526041 - MLT1J LTR MaLR -44 468 239 3 1162 1897 158 12 58 chr12 75731515 75731858 -45525672 - ORR1A2 LTR MaLR 0 327 1 3 1162 3984 81 14 2 chr12 75732204 75732761 -45524769 + L1_Mus3 LINE L1 6069 6632 -6 3 1162 24 0 0 0 chr12 75732956 75732980 -45524550 + AT_rich Low_complexity Low_complexity 1 24 0 3 1162 397 107 13 0 chr12 75732980 75733055 -45524475 - L1Md_F2 LINE L1 0 6582 6507 3 1162 620 299 77 40 chr12 75735191 75735651 -45521879 - L1M4 LINE L1 -375 5803 5323 3 1162 335 88 0 0 chr12 75735651 75735708 -45521822 - Lx LINE L1 -6 6648 6592 3 1162 620 280 122 77 chr12 75735708 75735779 -45521751 - L1M4 LINE L1 -856 5322 5253 3 1162 1016 223 151 75 chr12 75735779 75736124 -45521406 + ORR1D1 LTR MaLR 1 371 -3 3 1162 361 280 122 77 chr12 75736124 75736240 -45521290 - L1M4 LINE L1 -894 5252 5147 3 1162 348 333 22 15 chr12 75736240 75736374 -45521156 - B1F SINE Alu -14 135 1 3 1162 361 280 122 77 chr12 75736374 75736759 -45520771 - L1M4 LINE L1 -1000 5146 4728 3 1162 38063 42 1 3 chr12 75736835 75743086 -45514444 - L1Md_T LINE L1 0 6585 250 3 1162 636 285 196 33 chr12 75745069 75745379 -45512151 + MLT1A0 LTR MaLR 4 365 0 3 1162 23 0 0 0 chr12 75745583 75745606 -45511924 + AT_rich Low_complexity Low_complexity 1 23 0 3 1162 378 0 0 0 chr12 75746193 75746235 -45511295 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1162 192 200 0 0 chr12 75746350 75746415 -45511115 + T-rich Low_complexity Low_complexity 1 65 0 3 1162 415 258 0 40 chr12 75746656 75746781 -45510749 - ORR1E LTR MaLR -9 370 251 3 1162 895 245 99 38 chr12 75746854 75747143 -45510387 - ORR1E LTR MaLR -90 280 1 3 1162 432 0 0 0 chr12 75747902 75747950 -45509580 + (TTA)n Simple_repeat Simple_repeat 1 48 0 3 1162 2799 237 45 26 chr12 75747959 75748601 -45508929 - Lx5 LINE L1 -9 7041 6388 3 1162 291 274 0 59 chr12 75748669 75748764 -45508766 - ID4 SINE ID -57 95 6 3 1162 349 270 34 59 chr12 75748854 75748865 -45508665 + B4 SINE B4 80 103 -189 3 1162 446 145 29 0 chr12 75748865 75748934 -45508596 + B1_Mur4 SINE Alu 1 71 -79 3 1162 349 270 34 59 chr12 75748934 75748972 -45508558 + B4 SINE B4 104 194 -98 3 1162 283 340 64 25 chr12 75749953 75750110 -45507420 - Tigger8 DNA MER2_type -381 285 123 3 1162 261 346 120 0 chr12 75750560 75750693 -45506837 - MIR SINE MIR -22 240 92 3 1162 7259 87 2 1 chr12 75750854 75751904 -45505626 - L1_Mus1 LINE L1 0 6567 5517 3 1162 469 284 0 0 chr12 75752960 75753062 -45504468 - PB1D10 SINE Alu -8 109 8 3 1162 321 375 65 49 chr12 75753139 75753324 -45504206 - B3 SINE B2 -27 189 2 3 1162 181 57 0 54 chr12 75753511 75753548 -45503982 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1162 704 39 10 0 chr12 75753863 75753965 -45503565 - L1Md_T LINE L1 -2 6580 6478 3 1162 237 305 20 11 chr12 75754375 75754467 -45503063 + MIRc SINE MIR 79 171 -97 3 1162 253 191 19 0 chr12 75754488 75754593 -45502937 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 1162 580 262 39 49 chr12 75755112 75755317 -45502213 - RLTR40 LTR ERVK -596 221 19 3 1162 1256 334 61 21 chr12 75755447 75756056 -45501474 + Lx8 LINE L1 6592 7224 -249 3 1162 363 23 0 0 chr12 75756114 75756158 -45501372 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1162 274 208 99 0 chr12 75756160 75756261 -45501269 + Lx9 LINE L1 7523 7633 -11 3 1162 357 125 0 0 chr12 75756298 75756354 -45501176 + (CACG)n Simple_repeat Simple_repeat 4 59 0 3 1162 441 209 0 0 chr12 75756354 75756507 -45501023 + GA-rich Low_complexity Low_complexity 2 154 0 3 1162 21 95 0 0 chr12 75756539 75756602 -45500928 + AT_rich Low_complexity Low_complexity 1 63 0 3 1162 504 0 0 0 chr12 75757905 75757961 -45499569 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1162 348 24 0 0 chr12 75758867 75758908 -45498622 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1162 411 98 0 0 chr12 75759358 75759419 -45498111 + (GGA)n Simple_repeat Simple_repeat 3 63 0 3 1162 210 336 65 28 chr12 75759425 75759532 -45497998 - MER5A DNA MER1_type -34 155 45 3 1163 4154 54 4 0 chr12 75759933 75760454 -45497076 + L1Md_F2 LINE L1 6057 6579 -3 3 1163 7120 174 32 27 chr12 75760695 75763049 -45494481 - Lx5 LINE L1 -3 7047 4673 3 1163 4335 140 17 13 chr12 75763045 75763793 -45493737 + Lx5 LINE L1 3835 4585 -1292 3 1163 630 39 0 0 chr12 75765221 75765298 -45492232 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 3 1163 414 284 100 9 chr12 75765322 75765432 -45492098 - ID_B1 SINE B4 -11 213 94 3 1163 21 0 0 0 chr12 75765470 75765491 -45492039 + AT_rich Low_complexity Low_complexity 1 21 0 3 1163 423 183 59 34 chr12 75765491 75765610 -45491920 - Lx9 LINE L1 -2 7642 7521 3 1163 3882 154 6 8 chr12 75765615 75766255 -45491275 - Lx3C LINE L1 -176 6800 6162 3 1163 646 195 0 0 chr12 75766254 75766372 -45491158 + L1_Mur2 LINE L1 4572 4689 -1188 3 1163 404 185 22 0 chr12 75766784 75766876 -45490654 + (CATATA)n Simple_repeat Simple_repeat 6 99 0 3 1163 358 250 43 6 chr12 75766879 75767040 -45490490 + (TA)n Simple_repeat Simple_repeat 2 168 0 3 1163 207 323 0 0 chr12 75767098 75767160 -45490370 + CT-rich Low_complexity Low_complexity 2 63 0 3 1163 284 321 9 18 chr12 75767171 75767285 -45490245 - PB1D10 SINE Alu 0 117 5 3 1163 341 232 11 34 chr12 75768005 75768094 -45489436 + L1M3c LINE L1 1573 1659 -5120 3 1163 360 0 0 0 chr12 75768094 75768134 -45489396 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1163 261 315 21 53 chr12 75768190 75768378 -45489152 - L1M3c LINE L1 -4912 1229 1048 3 1163 281 268 76 38 chr12 75768409 75768541 -45488989 + L1M3c LINE L1 2315 2451 -4398 3 1163 470 68 27 0 chr12 75768650 75768724 -45488806 + (TCTG)n Simple_repeat Simple_repeat 3 78 0 3 1163 1658 245 118 16 chr12 75769439 75769932 -45487598 + Lx8 LINE L1 6275 6817 -656 3 1163 1200 258 99 25 chr12 75769961 75770355 -45487175 + Lx8 LINE L1 6947 7369 -104 3 1163 990 203 38 19 chr12 75770373 75770584 -45486946 - MTD LTR MaLR 0 419 205 3 1163 1593 147 72 16 chr12 75770810 75771140 -45486390 + ORR1A3 LTR MaLR 1 333 -13 3 1163 529 310 65 73 chr12 75771819 75772094 -45485436 - B4 SINE B4 -18 274 2 3 1163 373 76 30 0 chr12 75772145 75772211 -45485319 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1163 579 29 0 0 chr12 75773328 75773397 -45484133 + (TCC)n Simple_repeat Simple_repeat 2 70 0 3 1163 2393 214 91 37 chr12 75773416 75774086 -45483444 - RMER1B Other Other -3 1063 358 4 1163 514 332 98 20 chr12 75774442 75774688 -45482842 + B4A SINE B4 20 284 -8 4 1163 258 247 0 0 chr12 75775417 75775494 -45482036 + CT-rich Low_complexity Low_complexity 4 80 0 4 1163 219 143 184 0 chr12 75775494 75775543 -45481987 - ID SINE ID -166 58 1 4 1163 221 296 62 0 chr12 75775579 75775660 -45481870 - L2a LINE L2 -220 3206 3121 4 1163 2570 50 86 0 chr12 75776089 75776427 -45481103 - L1Md_T LINE L1 0 6582 6216 4 1163 996 301 132 25 chr12 75776987 75777509 -45480021 - MER70B LTR ERVL 0 578 1 4 1163 242 299 68 11 chr12 75778045 75778133 -45479397 + ID_B1 SINE B4 80 172 -52 4 1163 356 242 83 10 chr12 75778055 75778151 -45479379 + PB1D10 SINE Alu 9 111 -6 4 1163 203 138 0 0 chr12 75778193 75778222 -45479308 + (ATG)n Simple_repeat Simple_repeat 2 30 0 4 1163 501 308 0 7 chr12 75778272 75778416 -45479114 + RMER1C Other Other 825 967 -375 4 1163 612 253 110 14 chr12 75778441 75778722 -45478808 + RMER1C Other Other 1027 1334 -8 4 1163 296 296 20 75 chr12 75778951 75779097 -45478433 - L2c LINE L2 -5 3382 3245 4 1163 1231 294 76 25 chr12 75780649 75781252 -45476278 + Lx8 LINE L1 6817 7450 -23 4 1163 338 278 64 95 chr12 75782760 75783086 -45474444 - L1MB3 LINE L1 -323 6096 5781 4 1163 803 261 76 25 chr12 75783125 75783761 -45473769 - L1MB3 LINE L1 -602 5817 5150 4 1163 749 267 14 65 chr12 75783812 75784028 -45473502 + B4A SINE B4 15 219 -73 4 1163 248 310 70 6 chr12 75784038 75784210 -45473320 - L1M3 LINE L1 -302 5881 5699 4 1163 297 273 0 0 chr12 75784218 75784273 -45473257 + B4A SINE B4 238 292 0 4 1163 384 253 76 63 chr12 75784304 75784620 -45472910 - L1MB3 LINE L1 -1312 5064 4745 4 1163 2042 289 25 75 chr12 75784654 75785015 -45472515 - Lx8 LINE L1 0 7473 7145 4 1163 411 73 0 0 chr12 75785015 75785070 -45472460 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1163 2042 289 25 75 chr12 75785070 75785442 -45472088 - Lx8 LINE L1 -329 7144 6763 4 1163 5674 13 0 0 chr12 75785442 75786078 -45471452 + L1Md_T LINE L1 5947 6582 0 4 1163 2042 289 25 75 chr12 75786078 75786270 -45471260 - Lx8 LINE L1 -711 6762 6594 4 1163 814 242 162 0 chr12 75786265 75786505 -45471025 - Lx8 LINE L1 -984 6489 6211 4 1163 1467 295 14 17 chr12 75786922 75787516 -45470014 - Lx8 LINE L1 -1792 5904 5312 4 1163 334 308 20 14 chr12 75787732 75787954 -45469576 - L1MB3 LINE L1 -3787 2595 2369 4 1163 510 21 235 10 chr12 75788150 75788248 -45469282 + L1Md_F3 LINE L1 6465 6584 0 4 1163 467 276 49 0 chr12 75788336 75788499 -45469031 - L1MB3 LINE L1 -5684 700 530 4 1163 364 266 110 18 chr12 75788551 75788733 -45468797 + Lx9 LINE L1 7221 7418 -226 4 1163 453 110 0 0 chr12 75788733 75788806 -45468724 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1163 364 266 110 18 chr12 75788806 75788895 -45468635 + Lx9 LINE L1 7419 7516 -128 4 1163 203 174 102 20 chr12 75788895 75789042 -45468488 + (TA)n Simple_repeat Simple_repeat 2 160 0 4 1163 242 245 29 19 chr12 75788911 75789015 -45468515 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 4 1163 201 185 18 36 chr12 75789075 75789131 -45468399 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 4 1163 195 42 0 0 chr12 75789176 75789200 -45468330 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1163 376 351 33 26 chr12 75789342 75789646 -45467884 - L1MB3 LINE L1 -5994 390 85 4 1163 647 285 47 26 chr12 75793065 75793256 -45464274 + B3A SINE B2 1 195 -3 4 1163 201 250 40 27 chr12 75793580 75793601 -45463929 + (TATATG)n Simple_repeat Simple_repeat 4 23 0 4 1163 345 24 0 0 chr12 75793601 75793643 -45463887 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1163 201 250 40 27 chr12 75793643 75793695 -45463835 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 4 1163 429 194 28 22 chr12 75795259 75795438 -45462092 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1163 212 122 0 24 chr12 75795455 75795497 -45462033 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1163 248 221 31 31 chr12 75795519 75795617 -45461913 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 1163 276 248 7 15 chr12 75795623 75795758 -45461772 + (TA)n Simple_repeat Simple_repeat 2 135 0 4 1163 629 261 7 0 chr12 75796019 75796161 -45461369 - B1F2 SINE Alu -6 143 1 4 1163 378 0 0 0 chr12 75796167 75796209 -45461321 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1163 237 86 17 33 chr12 75797019 75797079 -45460451 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 1163 5573 230 130 19 chr12 75797083 75797180 -45460350 - Lx9 LINE L1 -35 7609 7486 4 1163 300 27 0 0 chr12 75797180 75797217 -45460313 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1163 5573 214 113 24 chr12 75797217 75799319 -45458211 - Lx9 LINE L1 -159 7485 5159 4 1163 2200 123 148 17 chr12 75799319 75799739 -45457791 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1163 3450 66 4 33 chr12 75799740 75800493 -45457037 + IAPEz-int LTR ERVK 9 662 -5819 4 1163 2486 79 0 3 chr12 75800493 75800836 -45456694 + IAPEz-int LTR ERVK 1359 1700 -4781 4 1163 5990 58 12 18 chr12 75800831 75801663 -45455867 + IAPEz-int LTR ERVK 5653 6479 -2 4 1163 2212 119 148 17 chr12 75801665 75802085 -45455445 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1163 1775 205 58 131 chr12 75802085 75802403 -45455127 - Lx9 LINE L1 -683 5164 4922 4 1163 6488 102 47 5 chr12 75802403 75803425 -45454105 - Lx3_Mus LINE L1 -12 6997 5933 4 1163 1775 205 58 131 chr12 75803425 75803458 -45454072 - Lx9 LINE L1 -926 4921 4899 4 1163 384 22 0 0 chr12 75803458 75803503 -45454027 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1163 1775 205 58 131 chr12 75803503 75803862 -45453668 - Lx9 LINE L1 -949 4898 4506 4 1163 310 334 102 32 chr12 75804167 75804610 -45452920 + L1MEc LINE L1 733 1206 -5194 4 1163 409 300 22 51 chr12 75804618 75804755 -45452775 + RSINE1 SINE B4 4 136 -29 4 1163 289 53 0 0 chr12 75805918 75805956 -45451574 - L1M3 LINE L1 -1042 5098 5061 4 1163 423 324 140 36 chr12 75808340 75808561 -45448969 + B4A SINE B4 44 287 -5 4 1163 1613 69 0 9 chr12 75809106 75809324 -45448206 - L1Md_T LINE L1 0 6582 6367 4 1163 1051 133 44 6 chr12 75810580 75810761 -45446769 - B2_Mm2 SINE B2 -7 188 1 4 1163 307 346 71 61 chr12 75811155 75811352 -45446178 - MLT1H-int LTR MaLR -34 1375 1177 4 1163 246 32 0 0 chr12 75811401 75811432 -45446098 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1163 30 0 0 0 chr12 75811448 75811478 -45446052 + AT_rich Low_complexity Low_complexity 1 30 0 4 1163 1996 192 19 22 chr12 75811499 75811915 -45445615 - Lx5 LINE L1 -148 6902 6501 4 1163 4219 72 20 32 chr12 75812201 75812799 -45444731 - L1Md_F2 LINE L1 0 6582 5992 4 1163 598 311 169 40 chr12 75812856 75813234 -45444296 - MLT1H-int LTR MaLR -861 548 122 4 1163 318 115 0 0 chr12 75813410 75813462 -45444068 + (CATA)n Simple_repeat Simple_repeat 3 54 0 4 1163 255 125 0 0 chr12 75813640 75813680 -45443850 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1163 955 179 49 0 chr12 75813892 75814076 -45443454 - Lx3C LINE L1 -1 6975 6783 4 1163 312 0 49 0 chr12 75814076 75814117 -45443413 + Lx3C LINE L1 6362 6404 -572 4 1163 13139 64 1 1 chr12 75814116 75815894 -45441636 + L1Md_F2 LINE L1 3810 5586 -297 4 1163 8276 29 11 1 chr12 75815894 75816877 -45440653 + L1Md_F2 LINE L1 5587 6579 -3 4 1163 42 0 0 0 chr12 75817109 75817151 -45440379 + AT_rich Low_complexity Low_complexity 1 42 0 4 1163 2405 115 27 8 chr12 75817166 75817542 -45439988 + Lx3C LINE L1 6390 6772 -204 4 1163 279 0 0 0 chr12 75817596 75817627 -45439903 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 4 1163 286 119 0 0 chr12 75819049 75819091 -45438439 - L1_Mm LINE L1 -480 5403 5362 4 1163 1111 173 80 24 chr12 75819200 75819413 -45438117 + URR1A DNA MER1_type 1 225 -1 4 1163 234 81 0 0 chr12 75819486 75819523 -45438007 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 4 1163 1099 90 0 0 chr12 75820093 75820238 -45437292 + B1_Mus1 SINE Alu 1 145 -3 4 1163 254 0 83 0 chr12 75820238 75820274 -45437256 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1163 1074 191 34 5 chr12 75820485 75820690 -45436840 + B3 SINE B2 1 211 -5 4 1163 195 42 0 0 chr12 75820845 75820869 -45436661 + (AAATG)n Simple_repeat Simple_repeat 3 26 0 4 1163 326 83 341 12 chr12 75822098 75822183 -45435347 - Lx9 LINE L1 -513 7131 7019 4 1163 384 302 75 67 chr12 75822191 75822648 -45434882 + RLTR15 LTR ERVK 19 499 -29 4 1163 260 227 15 15 chr12 75822711 75822778 -45434752 + CT-rich Low_complexity Low_complexity 3 69 0 4 1163 1123 61 0 52 chr12 75823332 75823487 -45434043 + B1_Mm SINE Alu 1 147 0 4 1163 30 0 0 0 chr12 75825061 75825091 -45432439 + AT_rich Low_complexity Low_complexity 1 30 0 4 1163 564 346 11 83 chr12 75825783 75826048 -45431482 + B4A SINE B4 8 253 -39 4 1163 398 102 0 14 chr12 75826056 75826126 -45431404 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1163 261 0 0 0 chr12 75826212 75826241 -45431289 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1163 216 0 0 0 chr12 75826262 75826286 -45431244 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1163 314 243 35 35 chr12 75826961 75827076 -45430454 - L1ME2z LINE L1 -296 6148 6034 4 1163 207 209 0 0 chr12 75827166 75827209 -45430321 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 4 1163 530 301 144 32 chr12 75827317 75827503 -45430027 - L1ME2z LINE L1 -342 5822 5621 4 1163 564 15 0 0 chr12 75827503 75827568 -45429962 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1163 530 301 144 32 chr12 75827568 75827755 -45429775 - L1ME2z LINE L1 -544 5620 5409 4 1163 418 332 67 12 chr12 75827904 75828157 -45429373 - L1ME2z LINE L1 -953 5193 4927 4 1163 1132 268 31 10 chr12 75828317 75828731 -45428799 - L1M3e LINE L1 -533 6718 6296 4 1163 249 354 97 30 chr12 75828731 75828865 -45428665 + B3A SINE B2 1 143 -55 4 1163 359 324 34 39 chr12 75829161 75829440 -45428090 - L1M3e LINE L1 -1059 6041 5772 4 1163 229 209 30 0 chr12 75829474 75829541 -45427989 - L1M3e LINE L1 -2129 4974 4906 4 1163 252 0 0 0 chr12 75829615 75829643 -45427887 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1163 216 0 0 0 chr12 75829643 75829666 -45427864 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1163 236 281 79 47 chr12 75829755 75829882 -45427648 - L1M3e LINE L1 -5043 1987 1857 4 1163 398 220 90 18 chr12 75830144 75830255 -45427275 - L1M3e LINE L1 -6700 330 212 4 1163 463 302 10 5 chr12 75830454 75830650 -45426880 - L1MD LINE L1 -872 5274 5078 4 1163 752 138 62 94 chr12 75830769 75830929 -45426601 + ORR1C2 LTR MaLR 1 155 -229 4 1163 456 19 0 0 chr12 75830929 75830982 -45426548 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1163 532 188 30 0 chr12 75831016 75831117 -45426413 + ORR1C2 LTR MaLR 281 384 0 4 1163 5109 224 72 34 chr12 75831117 75832418 -45425112 + ORR1C2-int LTR MaLR 2 1351 -19 4 1163 936 157 63 32 chr12 75832427 75832681 -45424849 + ORR1C2 LTR MaLR 1 357 -27 4 1163 3347 166 193 12 chr12 75832705 75833484 -45424046 - RMER19B LTR ERVK -12 890 30 4 1163 292 261 133 6 chr12 75833881 75834039 -45423491 - L1MD LINE L1 -1550 4596 4419 4 1163 504 303 204 24 chr12 75834487 75834737 -45422793 + MLT1A0 LTR MaLR 69 363 -2 4 1163 283 360 33 39 chr12 75835449 75835602 -45421928 - L2a LINE L2 -2 3424 3273 4 1163 22 35 0 0 chr12 75835779 75835808 -45421722 + AT_rich Low_complexity Low_complexity 1 29 0 4 1163 227 339 82 38 chr12 75836165 75836349 -45421181 - MIRb SINE MIR -39 229 38 4 1163 325 171 57 0 chr12 75837732 75837820 -45419710 - Lx9 LINE L1 0 7644 7552 4 1163 1465 210 23 3 chr12 75837850 75838160 -45419370 - Lx9 LINE L1 -177 7467 7152 4 1163 232 390 26 40 chr12 75838359 75838511 -45419019 + L3 LINE CR1 4340 4489 0 4 1163 23 68 0 0 chr12 75839716 75839760 -45417770 + AT_rich Low_complexity Low_complexity 1 44 0 4 1163 359 274 52 26 chr12 75839813 75839929 -45417601 - RMER15 LTR ERVL -13 562 444 4 1163 917 287 78 29 chr12 75841022 75841367 -45416163 + RMER5 LTR ERV1 11 372 -162 4 1163 5316 107 24 14 chr12 75841367 75842567 -45414963 - Lx3A LINE L1 -585 6396 5199 4 1163 233 108 0 0 chr12 75842551 75842588 -45414942 + Lx3A LINE L1 6407 6443 -566 4 1163 3219 119 14 2 chr12 75842588 75843076 -45414454 + Lx3A LINE L1 6479 6972 -9 4 1163 23 0 0 0 chr12 75843076 75843099 -45414431 + AT_rich Low_complexity Low_complexity 1 23 0 4 1163 452 299 57 0 chr12 75843127 75843284 -45414246 + RMER5 LTR ERV1 369 534 0 4 1163 212 315 109 18 chr12 75844187 75844297 -45413233 - L2b LINE L2 -12 3363 3244 4 1163 206 256 172 67 chr12 75844547 75844727 -45412803 - L2b LINE L2 -579 2840 2642 4 1163 495 0 0 0 chr12 75846329 75846384 -45411146 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1163 584 210 25 25 chr12 75848995 75849117 -45408413 - B1_Mur1 SINE Alu 0 149 28 4 1163 202 133 21 43 chr12 75849248 75849295 -45408235 + A-rich Low_complexity Low_complexity 3 48 0 4 1163 414 0 0 0 chr12 75849367 75849413 -45408117 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1163 189 0 0 0 chr12 75849413 75849433 -45408097 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1163 387 0 0 0 chr12 75850271 75850314 -45407216 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1163 387 0 0 0 chr12 75850314 75850356 -45407174 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1163 49 71 0 0 chr12 75851279 75851377 -45406153 + AT_rich Low_complexity Low_complexity 1 98 0 5 1163 698 280 14 50 chr12 75851388 75851610 -45405920 - B3 SINE B2 0 216 3 5 1163 578 291 57 21 chr12 75851650 75851843 -45405687 + B3 SINE B2 1 200 -16 5 1163 203 188 0 20 chr12 75852187 75852236 -45405294 + GA-rich Low_complexity Low_complexity 3 50 0 5 1163 23 0 0 0 chr12 75852676 75852699 -45404831 + AT_rich Low_complexity Low_complexity 1 23 0 5 1163 216 0 0 0 chr12 75852779 75852803 -45404727 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 5 1163 233 75 25 0 chr12 75853551 75853591 -45403939 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1163 267 279 78 43 chr12 75853966 75854221 -45403309 - L1ME2z LINE L1 -45 6399 6136 5 1163 932 290 142 42 chr12 75854770 75856412 -45401118 - L1MD LINE L1 -846 5300 3465 5 1163 236 346 0 82 chr12 75856412 75856497 -45401033 + ID4 SINE ID 6 83 0 5 1163 323 381 28 6 chr12 75857193 75857375 -45400155 - L1MD LINE L1 -3097 3049 2864 5 1163 279 0 0 0 chr12 75857375 75857406 -45400124 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1163 624 27 0 0 chr12 75857406 75857479 -45400051 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 1163 247 299 134 17 chr12 75857501 75857749 -45399781 - L1MD LINE L1 -3374 2772 2492 5 1163 1444 167 94 8 chr12 75857923 75858188 -45399342 - Lx2B LINE L1 -5 6995 6708 5 1163 1121 75 0 7 chr12 75859023 75859157 -45398373 + B1_Mus2 SINE Alu 2 135 -12 5 1163 554 14 29 0 chr12 75859157 75859227 -45398303 + (CAAAA)n Simple_repeat Simple_repeat 4 75 0 5 1163 1121 75 0 7 chr12 75859227 75859239 -45398291 + B1_Mus2 SINE Alu 136 147 0 5 1163 26 0 0 0 chr12 75859354 75859380 -45398150 + AT_rich Low_complexity Low_complexity 1 26 0 5 1163 2294 136 28 13 chr12 75859607 75859994 -45397536 + ORR1B1 LTR MaLR 1 393 -1 5 1163 342 253 86 135 chr12 75860051 75860378 -45397152 - L1MA4 LINE L1 -358 5942 5632 5 1163 478 216 201 0 chr12 75860380 75860519 -45397011 + L1_Mur3 LINE L1 256 422 -7290 5 1163 790 188 76 16 chr12 75860516 75860700 -45396830 + Lx7 LINE L1 7496 7690 -6 5 1163 27 49 0 0 chr12 75860753 75860794 -45396736 + AT_rich Low_complexity Low_complexity 1 41 0 5 1163 574 282 162 38 chr12 75860957 75861384 -45396146 - Lx7 LINE L1 -1456 6240 5761 5 1163 207 0 0 0 chr12 75861607 75861630 -45395900 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1163 434 201 87 134 chr12 75861630 75861802 -45395728 - RSINE1 SINE B4 0 165 2 5 1163 268 295 188 0 chr12 75861802 75861914 -45395616 + MER3 DNA MER1_type 1 133 -76 5 1163 243 0 0 0 chr12 75862352 75862379 -45395151 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1163 332 298 139 62 chr12 75862735 75862776 -45394754 + L1M4c LINE L1 30 69 -6961 5 1163 2829 44 9 0 chr12 75862776 75863115 -45394415 - ORR1A1 LTR MaLR 0 346 5 5 1163 332 298 139 62 chr12 75863115 75863331 -45394199 + L1M4c LINE L1 70 307 -6723 5 1163 263 231 46 0 chr12 75863537 75863602 -45393928 + L1M4c LINE L1 1844 1911 -5119 5 1163 355 298 49 6 chr12 75863797 75863959 -45393571 + L1M4c LINE L1 2312 2480 -4628 5 1163 600 293 40 134 chr12 75864792 75865133 -45392397 + L1M4c LINE L1 5209 5508 -1595 5 1163 5077 96 14 1 chr12 75865133 75865844 -45391686 + L1_Mus4 LINE L1 5909 6628 -8 5 1163 203 0 37 0 chr12 75865850 75865877 -45391653 + (TAA)n Simple_repeat Simple_repeat 2 29 0 5 1163 600 293 40 134 chr12 75865877 75865977 -45391553 + L1M4c LINE L1 5509 5615 -1488 5 1163 359 274 0 0 chr12 75866053 75866166 -45391364 + L1M4c LINE L1 5934 6046 -1057 5 1163 4844 178 44 39 chr12 75866276 75866931 -45390599 + L1_Mur3 LINE L1 2843 3496 -2384 5 1163 216 0 0 0 chr12 75866931 75866955 -45390575 + (TTG)n Simple_repeat Simple_repeat 1 24 0 5 1163 4844 178 44 39 chr12 75866955 75867442 -45390088 + L1_Mur3 LINE L1 3497 3991 -1889 5 1163 936 46 8 0 chr12 75867646 75867776 -45389754 + L1Md_F2 LINE L1 6433 6563 -19 5 1163 183 42 0 0 chr12 75867779 75867803 -45389727 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 5 1163 2525 217 81 3 chr12 75869172 75869742 -45387788 - Lx9 LINE L1 -622 7022 6409 5 1163 790 214 110 40 chr12 75869750 75869950 -45387580 + Lx9 LINE L1 7252 7465 -179 5 1163 540 30 0 0 chr12 75869951 75870017 -45387513 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1163 23 0 0 0 chr12 75870153 75870176 -45387354 + AT_rich Low_complexity Low_complexity 1 23 0 5 1163 348 325 88 36 chr12 75870233 75870500 -45387030 + B4 SINE B4 8 290 -2 5 1163 29 28 0 0 chr12 75870614 75870650 -45386880 + AT_rich Low_complexity Low_complexity 1 36 0 5 1163 530 158 147 0 chr12 75870695 75870790 -45386740 + PB1D9 SINE Alu 3 111 -9 5 1163 259 309 78 25 chr12 75871004 75871246 -45386284 + L1M5 LINE L1 3326 3580 -2566 5 1163 381 286 251 22 chr12 75871483 75871930 -45385600 + L1MCa LINE L1 40 588 -5920 5 1163 280 291 149 34 chr12 75872258 75872493 -45385037 + L1ME2z LINE L1 5790 6051 -393 5 1163 6715 171 11 23 chr12 75872697 75873981 -45383549 - Lx4B LINE L1 -4 7054 5787 5 1163 8271 162 18 9 chr12 75873992 75875380 -45382150 - Lx2 LINE L1 -11 6986 5587 5 1163 1816 186 45 30 chr12 75875909 75876404 -45381126 - RMER6C LTR ERVK 0 690 1 5 1163 7948 53 6 0 chr12 75876742 75877873 -45379657 - L1Md_F2 LINE L1 -12 6570 5434 5 1163 10242 76 7 5 chr12 75877785 75879180 -45378350 + L1Md_F2 LINE L1 4028 5424 -459 5 1163 981 217 24 24 chr12 75879199 75879407 -45378123 + B3 SINE B2 2 209 -7 5 1163 702 35 0 0 chr12 75879442 75879527 -45378003 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1163 245 204 20 0 chr12 75879529 75879578 -45377952 + GA-rich Low_complexity Low_complexity 2 51 0 5 1163 269 311 0 0 chr12 75879581 75879642 -45377888 - RSINE1 SINE B4 -20 145 85 5 1163 319 210 73 12 chr12 75880390 75880554 -45376976 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 5 1163 1767 203 40 3 chr12 75880707 75881077 -45376453 - Lx3C LINE L1 -2 6974 6591 5 1163 885 19 0 0 chr12 75881893 75881996 -45375534 + (TTC)n Simple_repeat Simple_repeat 2 104 0 5 1163 348 330 79 72 chr12 75882266 75882557 -45374973 - LTR89 LTR ERVL? -100 779 487 5 1163 180 382 92 20 chr12 75883150 75883302 -45374228 + L2 LINE L2 2650 2804 -615 5 1163 360 0 0 0 chr12 75883302 75883342 -45374188 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1163 180 382 92 20 chr12 75883342 75883384 -45374146 + L2 LINE L2 2805 2857 -562 5 1163 375 23 0 0 chr12 75884661 75884705 -45372825 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 5 1163 21 0 0 0 chr12 75886224 75886245 -45371285 + AT_rich Low_complexity Low_complexity 1 21 0 5 1163 27 62 0 0 chr12 75887453 75887501 -45370029 + AT_rich Low_complexity Low_complexity 1 48 0 5 1163 265 295 13 13 chr12 75888143 75888222 -45369308 - ID4_ SINE ID -3 80 2 5 1163 196 341 78 22 chr12 75888304 75888394 -45369136 - MIRb SINE MIR -76 192 98 5 1163 1288 178 135 32 chr12 75889415 75889786 -45367744 - RLTR9E LTR ERVK 0 409 1 5 145 3602 64 0 4 chr12 75890241 75890699 -45366831 - L1_Mus1 LINE L1 0 6567 6112 5 1164 2774 35 0 0 chr12 75890699 75891045 -45366485 + L1_Mus1 LINE L1 5761 6106 -461 5 1164 381 307 92 44 chr12 75891677 75891905 -45365625 - ERVL-E-int LTR ERVL -3201 2466 2228 5 1164 338 307 99 37 chr12 75893206 75893421 -45364109 - LTR33A LTR ERVL -291 240 5 5 1164 3021 154 64 5 chr12 75894011 75894826 -45362704 - Lx2B LINE L1 -825 6175 5324 5 1164 2442 214 38 137 chr12 75894827 75894959 -45362571 + Lx2B LINE L1 6235 6366 -634 5 1164 270 0 0 0 chr12 75894959 75894989 -45362541 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5 1164 2442 214 38 137 chr12 75894989 75895041 -45362489 + Lx2B LINE L1 6367 6378 -622 5 1164 270 0 0 0 chr12 75895041 75895071 -45362459 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5 1164 2442 214 38 137 chr12 75895071 75895124 -45362406 + Lx2B LINE L1 6379 6390 -610 5 1164 369 0 0 0 chr12 75895124 75895165 -45362365 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 5 1164 2442 214 38 137 chr12 75895165 75895775 -45361755 + Lx2B LINE L1 6391 7000 0 5 1164 545 322 67 63 chr12 75895784 75896069 -45361461 + MTE2a LTR MaLR 35 320 -59 5 1164 201 222 0 22 chr12 75896646 75896692 -45360838 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1164 555 119 0 23 chr12 75896990 75897119 -45360411 + (TTTC)n Simple_repeat Simple_repeat 1 126 0 5 1164 32821 82 5 10 chr12 75897181 75903141 -45354389 - L1Md_F2 LINE L1 -1 6581 654 5 1164 443 321 30 8 chr12 75903223 75903355 -45354175 - B1F1 SINE Alu -9 140 6 5 1164 868 274 82 17 chr12 75903515 75903991 -45353539 + L1M3 LINE L1 3366 3872 -2268 5 1164 1493 231 84 33 chr12 75904012 75904406 -45353124 - MTD LTR MaLR 0 419 6 5 1164 537 325 94 7 chr12 75904410 75904825 -45352705 + L1M3 LINE L1 3900 4350 -1790 5 1164 1691 194 15 10 chr12 75904824 75905492 -45352038 - GSAT_MM Satellite Satellite -185 671 1 5 1164 1267 261 27 30 chr12 75905639 75905971 -45351559 + ORR1E LTR MaLR 1 331 -28 5 1164 2600 75 0 20 chr12 75905982 75906336 -45351194 - L1_Mus1 LINE L1 0 6567 6221 5 1164 694 294 35 25 chr12 75906412 75906730 -45350800 + L1M3 LINE L1 4693 5013 -1130 5 1164 1280 230 87 8 chr12 75906726 75907116 -45350414 + Lx9 LINE L1 7202 7622 -22 5 1164 244 71 0 0 chr12 75907113 75907155 -45350375 + L1_Mus1 LINE L1 6526 6567 0 5 1164 792 257 49 21 chr12 75907154 75907245 -45350285 + L1M3 LINE L1 4986 5080 -1060 5 1164 210 37 0 0 chr12 75907245 75907272 -45350258 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 1164 792 252 149 26 chr12 75907272 75907772 -45349758 + L1M3 LINE L1 5081 5657 -511 5 1164 474 220 59 8 chr12 75907782 75907901 -45349629 + Lx9 LINE L1 6593 6717 -927 5 1164 251 322 43 0 chr12 75907930 75908045 -45349485 + Lx9 LINE L1 6699 6818 -655 5 1164 1286 171 97 22 chr12 75908067 75908327 -45349203 - RLTR9E LTR ERVK 0 409 130 5 1164 3813 121 14 39 chr12 75908327 75908556 -45348974 + RLTR5_Mm LTR ERV1 1 221 -407 5 1164 3769 32 5 0 chr12 75908556 75908990 -45348540 + RLTR10C LTR ERVK 1 436 0 5 1164 3813 121 14 39 chr12 75908990 75909404 -45348126 + RLTR5_Mm LTR ERV1 222 628 0 5 1164 838 74 0 24 chr12 75909406 75909530 -45348000 - RLTR9E LTR ERVK -288 121 1 5 1164 444 82 0 88 chr12 75909532 75909612 -45347918 - MMETn-int LTR ERVK -3 7403 7331 5 1164 1929 186 146 8 chr12 75909612 75910085 -45347445 - RLTR13D6 LTR ERVK -363 539 1 5 1164 1514 128 8 12 chr12 75910096 75910349 -45347181 - ETnERV3-int LTR ERVK -28 5780 5529 5 1164 3413 178 40 28 chr12 75910515 75912426 -45345104 - MMETn-int LTR ERVK -3307 4099 2356 5 1164 1500 199 232 33 chr12 75912416 75912833 -45344697 - MMETn-int LTR ERVK -4452 2954 2455 5 1164 2571 192 78 81 chr12 75912873 75913907 -45343623 - RLTR45-int LTR ERVK -4401 2843 2114 5 1164 1835 111 162 22 chr12 75913909 75914268 -45343262 - RLTR9E LTR ERVK 0 409 1 5 1164 411 299 130 51 chr12 75914268 75914682 -45342848 + Lx9 LINE L1 6883 7458 -186 5 1164 455 277 86 42 chr12 75914837 75915161 -45342369 + L1MB3 LINE L1 5654 5991 -177 5 1164 1359 186 79 100 chr12 75915274 75915758 -45341772 + RMER4B LTR ERVK 1 480 -131 5 1164 2745 66 143 139 chr12 75915758 75916268 -45341262 - RLTR1B LTR ERV1 0 512 1 5 1164 452 224 317 52 chr12 75916268 75916406 -45341124 + RMER4B LTR ERVK 413 585 0 5 1164 2208 137 53 20 chr12 75917142 75917538 -45339992 - RLTR9E LTR ERVK 0 409 1 5 1164 314 319 102 20 chr12 75917572 75917818 -45339712 - Charlie7 DNA MER1_type -915 1697 1432 5 1164 265 288 0 29 chr12 75918272 75918340 -45339190 + ID4_ SINE ID 16 81 -2 6 1164 801 328 127 55 chr12 75918482 75918925 -45338605 - Charlie7 DNA MER1_type -1408 1204 772 5 1164 342 349 9 0 chr12 75918925 75919031 -45338499 + PB1D10 SINE Alu 3 109 -8 6 1164 801 328 127 55 chr12 75919031 75919496 -45338034 - Charlie7 DNA MER1_type -1841 771 231 5 1164 26 0 0 0 chr12 75920398 75920424 -45337106 + AT_rich Low_complexity Low_complexity 1 26 0 6 1164 249 57 0 0 chr12 75920570 75920605 -45336925 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1164 261 0 0 0 chr12 75921359 75921388 -45336142 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1164 273 372 58 58 chr12 75921390 75921581 -45335949 - MER20 DNA MER1_type -9 210 20 6 1164 180 227 0 83 chr12 75922030 75922078 -45335452 - L4 LINE RTE -1352 677 634 6 1164 37 52 0 0 chr12 75922187 75922245 -45335285 + AT_rich Low_complexity Low_complexity 1 58 0 6 1164 1289 258 70 35 chr12 75922245 75922731 -45334799 - Lx8 LINE L1 -5 7468 6966 6 1164 305 338 31 6 chr12 75922735 75922896 -45334634 - Lx8 LINE L1 -862 6611 6447 6 1164 304 340 67 43 chr12 75922955 75923164 -45334366 + MLT2C2 LTR ERVL 15 228 -236 6 1164 184 96 45 57 chr12 75923178 75923266 -45334264 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 6 1164 181 372 85 40 chr12 75924904 75925103 -45332427 - L2 LINE L2 -339 3080 2873 6 1164 459 52 0 0 chr12 75926466 75926524 -45331006 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1164 317 294 37 24 chr12 75927149 75927313 -45330217 - L1_Rod LINE L1 -1896 3951 3786 6 1164 248 272 12 0 chr12 75927322 75927403 -45330127 + Lx8 LINE L1 5142 5223 -624 6 1164 963 299 112 34 chr12 75927414 75928149 -45329381 + Lx8 LINE L1 5655 6446 -1027 6 1164 3269 152 45 18 chr12 75928148 75928324 -45329206 + L1_Mur2 LINE L1 4444 4630 -1247 6 1164 396 0 0 0 chr12 75928324 75928368 -45329162 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1164 3269 152 45 18 chr12 75928368 75928843 -45328687 + L1_Mur2 LINE L1 4631 5111 -766 6 1164 345 0 0 182 chr12 75928869 75929089 -45328441 + (AGCTG)n Simple_repeat Simple_repeat 1 180 0 6 1164 240 171 0 0 chr12 75929094 75929135 -45328395 + B3A SINE B2 1 41 -157 6 1164 652 165 35 3 chr12 75929286 75929436 -45328094 + B2_Mm2 SINE B2 29 184 -11 6 1164 6342 175 34 24 chr12 75929453 75931202 -45326328 + Lx5 LINE L1 5076 6816 -234 6 1164 1259 101 32 0 chr12 75931229 75931418 -45326112 + B2_Mm2 SINE B2 1 195 0 6 1164 727 287 15 0 chr12 75931837 75932032 -45325498 + B3A SINE B2 1 198 0 6 1164 641 236 50 55 chr12 75932526 75932728 -45324802 - MTEa LTR MaLR -7 372 172 6 1164 351 231 7 133 chr12 75933556 75933640 -45323890 + Lx3C LINE L1 6729 6806 -170 6 1164 3017 30 0 37 chr12 75933640 75934021 -45323509 + L1Md_F3 LINE L1 6204 6570 -14 6 1164 351 226 269 81 chr12 75934021 75934137 -45323393 + Lx3C LINE L1 6807 6859 -117 6 1164 818 302 75 45 chr12 75934540 75934914 -45322616 - MTE2a LTR MaLR -12 407 22 6 1164 327 284 0 0 chr12 75935135 75935209 -45322321 - ID4_ SINE ID -7 76 3 6 1164 207 0 0 0 chr12 75935608 75935631 -45321899 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1164 312 355 29 63 chr12 75936151 75936530 -45321000 + L1M3e LINE L1 1727 2092 -4938 6 1164 234 237 0 0 chr12 75936809 75936847 -45320683 + tRNA-Met_ tRNA tRNA 1 38 -38 6 1164 2276 123 11 3 chr12 75936903 75937285 -45320245 - L1_Mur2 LINE L1 -1764 4113 3729 6 1164 6829 91 46 1 chr12 75937310 75938314 -45319216 + L1_Mus3 LINE L1 5588 6636 -2 6 1164 626 235 88 24 chr12 75938370 75938540 -45318990 + B3A SINE B2 2 182 -16 6 1164 644 259 12 6 chr12 75938648 75938815 -45318715 + Lx9 LINE L1 7289 7456 -188 6 1164 283 114 143 0 chr12 75938810 75938880 -45318650 + Lx9 LINE L1 7563 7642 -2 6 1164 508 327 71 92 chr12 75938956 75939239 -45318291 - MTE2a LTR MaLR -100 279 3 6 1164 1025 151 43 24 chr12 75939429 75939640 -45317890 + Lx4B LINE L1 6703 6917 -141 6 1164 427 221 35 0 chr12 75939629 75939742 -45317788 + L1M2 LINE L1 4667 4783 -1360 6 1164 302 325 81 70 chr12 75939994 75940166 -45317364 + MLT1A LTR MaLR 1 174 -200 6 1164 1332 171 8 0 chr12 75940167 75940412 -45317118 + Lx9 LINE L1 7235 7481 -163 6 1164 406 213 51 7 chr12 75940534 75940671 -45316859 + Lx9 LINE L1 7499 7641 -3 6 1164 270 279 136 24 chr12 75940735 75940860 -45316670 + MLT1A LTR MaLR 258 396 -12 6 1164 409 223 125 35 chr12 75940904 75941160 -45316370 + L1M2 LINE L1 5084 5362 -778 6 1164 290 47 47 0 chr12 75941373 75941416 -45316114 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 6 1164 2459 207 39 16 chr12 75941446 75941962 -45315568 - Lx5 LINE L1 -3 7047 6520 6 1164 589 291 0 39 chr12 75941983 75942162 -45315368 + Lx8 LINE L1 6225 6396 -1077 6 1164 432 0 0 0 chr12 75942652 75942700 -45314830 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1164 1297 284 92 57 chr12 75943574 75944064 -45313466 - RMER5 LTR ERV1 -27 507 1 6 1164 2154 197 12 28 chr12 75944249 75944677 -45312853 - MTC LTR MaLR 0 421 1 6 1164 590 0 0 14 chr12 75945475 75945546 -45311984 + (GAAAA)n Simple_repeat Simple_repeat 2 71 0 6 1164 936 202 60 5 chr12 75946009 75946208 -45311322 - B3 SINE B2 -6 210 1 6 1164 259 230 107 29 chr12 75946282 75946385 -45311145 - BC1_Mm scRNA scRNA -39 113 3 6 1164 714 322 25 4 chr12 75947264 75947501 -45310029 - MER2 DNA MER2_type -2 343 102 6 1164 666 268 38 0 chr12 75948063 75948220 -45309310 + RSINE1 SINE B4 3 165 0 6 1164 23 0 0 0 chr12 75948267 75948290 -45309240 + AT_rich Low_complexity Low_complexity 1 23 0 6 1164 264 227 0 0 chr12 75948390 75948456 -45309074 + A-rich Low_complexity Low_complexity 1 66 0 6 1164 21 36 0 0 chr12 75950626 75950654 -45306876 + AT_rich Low_complexity Low_complexity 1 28 0 6 1164 1121 247 31 34 chr12 75950760 75951053 -45306477 + B4A SINE B4 1 292 0 6 1164 234 207 0 0 chr12 75951097 75951155 -45306375 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1164 1424 189 101 26 chr12 75952447 75952795 -45304735 + ORR1D1 LTR MaLR 1 374 0 6 1164 570 304 47 0 chr12 75952804 75952975 -45304555 - B3A SINE B2 -16 182 4 6 1164 261 353 95 14 chr12 75953016 75953237 -45304293 + MLT2F LTR ERVL 338 576 -87 6 1164 2463 181 109 13 chr12 75955176 75955701 -45301829 - RMER15 LTR ERVL 0 575 1 6 1164 253 291 100 48 chr12 75956396 75956627 -45300903 + MER97a DNA MER1_type? 652 894 0 6 1164 213 65 0 0 chr12 75957477 75957508 -45300022 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1164 36578 38 5 2 chr12 75957524 75963686 -45293844 - L1Md_T LINE L1 -3 6582 305 6 1164 1249 282 112 60 chr12 75965072 75965098 -45292432 - MER73 LTR ERVL -2 642 618 6 1164 393 22 0 0 chr12 75965098 75965144 -45292386 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 6 1164 1249 282 112 60 chr12 75965144 75965155 -45292375 - MER73 LTR ERVL -27 617 617 6 1164 207 0 0 0 chr12 75965155 75965178 -45292352 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1164 1249 282 112 60 chr12 75965178 75965690 -45291840 - MER73 LTR ERVL -27 617 63 6 1164 523 341 22 58 chr12 75966170 75966394 -45291136 + B4A SINE B4 63 278 -14 6 1164 305 82 20 0 chr12 75966418 75966467 -45291063 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1164 483 322 11 38 chr12 75966501 75966685 -45290845 + Lx8 LINE L1 7105 7283 -190 6 1164 2066 125 15 15 chr12 75967926 75968267 -45289263 - Lx LINE L1 -10 6644 6304 6 1164 257 250 70 23 chr12 75968451 75968537 -45288993 - RLTR25A LTR ERVK -492 611 522 6 1164 841 59 17 8 chr12 75968464 75968583 -45288947 - B1_Mus1 SINE Alu -27 121 2 6 1164 1085 226 92 114 chr12 75968641 75969069 -45288461 + MT2A LTR ERVL 1 561 -40 6 1164 446 0 19 0 chr12 75969069 75969123 -45288407 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1164 492 18 0 0 chr12 75969123 75969179 -45288351 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1164 849 262 84 72 chr12 75969179 75969194 -45288336 + MT2A LTR ERVL 562 576 -25 6 1164 739 172 250 0 chr12 75969194 75969374 -45288156 - URR1A DNA MER1_type 0 226 2 6 1164 849 262 84 72 chr12 75969374 75969399 -45288131 + MT2A LTR ERVL 577 600 -1 6 1164 290 239 14 14 chr12 75970033 75970105 -45287425 - B1_Mur2 SINE Alu -40 109 38 6 1164 22 70 0 0 chr12 75970890 75970933 -45286597 + AT_rich Low_complexity Low_complexity 1 43 0 6 1164 1160 82 0 0 chr12 75971018 75971165 -45286365 + B1_Mus1 SINE Alu 1 147 -1 6 1164 473 63 0 41 chr12 75971339 75971427 -45286103 - L1Md_F2 LINE L1 0 6582 6503 6 1164 198 0 0 0 chr12 75971619 75971641 -45285889 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1164 5597 109 4 9 chr12 75972045 75972862 -45284668 + Lx3A LINE L1 6165 6977 -4 6 1164 915 255 30 9 chr12 75973244 75973572 -45283958 + L1MD LINE L1 4129 4463 -1683 6 1164 2049 106 10 26 chr12 75974101 75974411 -45283119 + L1_Mus1 LINE L1 6263 6567 0 6 1164 288 0 0 0 chr12 75974810 75974842 -45282688 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1164 242 51 51 0 chr12 75974842 75974880 -45282650 + (TTAGGG)n Simple_repeat Simple_repeat 2 42 0 6 1164 260 200 14 0 chr12 75975210 75975280 -45282250 + CT-rich Low_complexity Low_complexity 3 73 0 6 1164 26 30 0 0 chr12 75975627 75975660 -45281870 + AT_rich Low_complexity Low_complexity 1 33 0 6 1164 931 198 27 27 chr12 75975827 75975989 -45281541 + B3 SINE B2 2 163 -53 6 1164 3347 164 40 61 chr12 75975989 75976645 -45280885 + RLTR26 LTR ERVK 1 642 0 6 1164 284 229 14 28 chr12 75976645 75976696 -45280834 + B3 SINE B2 161 210 -6 6 1164 863 103 20 14 chr12 75977167 75977315 -45280215 + L1Md_F3 LINE L1 6420 6568 -16 6 1164 26 0 0 0 chr12 75977318 75977344 -45280186 + AT_rich Low_complexity Low_complexity 1 26 0 6 1164 256 352 0 0 chr12 75977377 75977485 -45280045 + L1M5 LINE L1 5435 5542 -637 6 1164 11610 86 17 10 chr12 75977659 75979401 -45278129 - L1_Mus1 LINE L1 -384 5499 3746 6 1164 6992 83 2 2 chr12 75979393 75980415 -45277115 + L1_Mus1 LINE L1 5545 6566 -1 6 1164 683 234 21 0 chr12 75980576 75980717 -45276813 - B1F2 SINE Alu -1 148 5 6 1164 1612 262 46 38 chr12 75980728 75980790 -45276740 + RLTR11A2 LTR ERVK 7 69 -458 6 1164 414 0 0 0 chr12 75980790 75980836 -45276694 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1164 1612 262 46 38 chr12 75980836 75981276 -45276254 + RLTR11A2 LTR ERVK 70 513 -14 6 1164 310 244 139 47 chr12 75982703 75982832 -45274698 - MER20 DNA MER1_type -55 164 24 7 1164 302 188 31 10 chr12 75983211 75983308 -45274222 + (TATATG)n Simple_repeat Simple_repeat 2 100 0 7 1164 347 321 66 15 chr12 75983408 75983544 -45273986 - LTR53 LTR ERVL -85 434 292 7 1164 232 283 0 16 chr12 75984561 75984646 -45272884 + (TTCA)n Simple_repeat Simple_repeat 1 83 0 7 1164 914 143 6 0 chr12 75984652 75984827 -45272703 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 7 1164 832 139 22 0 chr12 75984850 75985081 -45272449 + (TCCA)n Simple_repeat Simple_repeat 1 236 0 7 1164 1200 69 29 0 chr12 75985109 75985521 -45272009 + (TCCA)n Simple_repeat Simple_repeat 1 424 0 7 1164 201 94 0 0 chr12 75985543 75985575 -45271955 + (CATA)n Simple_repeat Simple_repeat 1 32 0 7 1164 768 22 0 0 chr12 75986087 75986177 -45271353 + (TG)n Simple_repeat Simple_repeat 1 90 0 7 1164 1012 268 39 26 chr12 75986801 75987226 -45270304 - Lx7 LINE L1 -232 7241 6795 7 1164 21 0 0 0 chr12 75987795 75987816 -45269714 + AT_rich Low_complexity Low_complexity 1 21 0 7 1164 1709 206 75 13 chr12 75988015 75988403 -45269127 + MTD LTR MaLR 8 419 0 7 1164 255 31 0 0 chr12 75990050 75990082 -45267448 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1164 1164 84 44 11 chr12 75990706 75990887 -45266643 + L1_Mus2 LINE L1 6380 6566 0 7 1164 213 39 0 0 chr12 75990903 75990929 -45266601 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1164 27 0 0 0 chr12 75991313 75991340 -45266190 + AT_rich Low_complexity Low_complexity 1 27 0 7 1164 270 0 0 0 chr12 75991998 75992028 -45265502 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 1164 450 94 0 0 chr12 75992028 75992091 -45265439 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1164 192 282 92 83 chr12 75993038 75993158 -45264372 - L4 LINE RTE -1783 246 126 7 1164 819 80 0 0 chr12 75993656 75993768 -45263762 + (TA)n Simple_repeat Simple_repeat 2 113 0 7 1164 341 169 0 63 chr12 75994845 75994940 -45262590 + Lx9 LINE L1 7519 7607 -37 7 1164 261 180 11 22 chr12 75998403 75998494 -45259036 + (TA)n Simple_repeat Simple_repeat 2 91 0 7 1164 230 247 11 0 chr12 75999721 75999814 -45257716 + (TA)n Simple_repeat Simple_repeat 2 95 0 7 1164 28 0 0 0 chr12 75999962 75999990 -45257540 + AT_rich Low_complexity Low_complexity 1 28 0 7 1164 1133 96 62 0 chr12 76000878 76001055 -45256475 + B2_Mm2 SINE B2 2 189 -6 1 1164 200 227 154 39 chr12 76001175 76001253 -45256277 + MIR SINE MIR 173 259 -3 2 1164 337 260 14 0 chr12 76003296 76003369 -45254161 - B2_Mm2 SINE B2 -119 76 3 3 1164 615 62 0 0 chr12 76003667 76003747 -45253783 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 4 1164 366 80 0 0 chr12 76003789 76003839 -45253691 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1164 556 259 22 69 chr12 76003962 76004236 -45253294 + Lx9 LINE L1 6957 7217 -427 6 1164 558 0 0 0 chr12 76006203 76006265 -45251265 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 7 1164 203 152 0 21 chr12 76006391 76006438 -45251092 + CT-rich Low_complexity Low_complexity 5 50 0 8 1164 270 81 0 0 chr12 76006706 76006743 -45250787 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1164 442 248 46 0 chr12 76006757 76006910 -45250620 + Lx9 LINE L1 7478 7637 -7 6 1164 541 278 91 32 chr12 76007394 76007580 -45249950 - B3A SINE B2 0 198 2 1 1164 596 181 36 26 chr12 76008100 76008235 -45249295 + B1_Mur2 SINE Alu 1 142 -7 1 1164 1119 82 7 0 chr12 76008245 76008391 -45249139 + B1_Mus1 SINE Alu 2 148 0 1 1164 255 74 0 69 chr12 76008406 76008464 -45249066 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 1 1164 29847 88 7 6 chr12 76008798 76011693 -45245837 - L1_Mus1 LINE L1 0 6567 3661 1 1164 1205 48 0 0 chr12 76011693 76011840 -45245690 - B1_Mm SINE Alu 0 147 1 1 1164 29847 126 21 8 chr12 76011840 76015172 -45242358 - L1_Mus1 LINE L1 -2223 3660 288 1 1164 441 50 0 0 chr12 76015172 76015232 -45242298 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1164 4173 185 60 12 chr12 76015232 76015255 -45242275 - L1_Mus1 LINE L1 -6329 287 265 1 1164 360 0 0 0 chr12 76015589 76015629 -45241901 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1164 285 210 96 24 chr12 76015666 76015749 -45241781 - MLT1A1 LTR MaLR -3 405 317 1 1164 261 275 140 44 chr12 76016440 76016554 -45240976 + MIR3 SINE MIR 32 156 -52 1 1164 342 313 98 36 chr12 76017719 76018107 -45239423 + L1M5 LINE L1 4494 4905 -1241 2 1164 451 202 8 8 chr12 76019020 76019150 -45238380 + (TA)n Simple_repeat Simple_repeat 2 131 0 2 1164 421 233 6 33 chr12 76019296 76019478 -45238052 + (TA)n Simple_repeat Simple_repeat 2 178 0 2 1164 515 271 86 51 chr12 76019674 76019849 -45237681 - B3 SINE B2 -34 182 2 2 1164 288 83 17 0 chr12 76020467 76020527 -45237003 + L1_Mus3 LINE L1 6577 6637 -1 2 1164 212 395 0 11 chr12 76021133 76021220 -45236310 + ID_B1 SINE B4 81 166 -58 2 1164 380 239 39 12 chr12 76021142 76021238 -45236292 + B1F SINE Alu 9 107 -13 2 1164 486 49 0 0 chr12 76021240 76021301 -45236229 + (GGA)n Simple_repeat Simple_repeat 3 63 0 2 1165 299 231 25 25 chr12 76022625 76022705 -45234825 + LTR33 LTR ERVL 14 93 -422 2 1165 356 265 154 0 chr12 76022922 76023039 -45234491 - MTEa LTR MaLR -244 135 1 2 1165 519 305 58 127 chr12 76023107 76023514 -45234016 + MTEa LTR MaLR 1 379 0 3 1165 572 295 147 26 chr12 76023621 76023927 -45233603 + MLT1A0 LTR MaLR 21 363 -2 3 1165 1291 116 21 0 chr12 76025280 76025469 -45232061 + B2_Mm1t SINE B2 1 193 0 3 1165 290 336 9 9 chr12 76025634 76025745 -45231785 + L2a LINE L2 2587 2697 -722 3 1165 773 255 78 38 chr12 76025751 76026044 -45231486 + MLT1C LTR MaLR 10 314 -153 3 1165 398 356 116 46 chr12 76026495 76027021 -45230509 + L2a LINE L2 2710 3283 -143 3 1165 33962 33 1 0 chr12 76027517 76033428 -45224102 + L1Md_T LINE L1 1 5589 -297 3 1165 9006 6 0 0 chr12 76033428 76034424 -45223106 + L1Md_T LINE L1 5590 6585 0 3 1165 237 108 0 0 chr12 76034431 76034468 -45223062 + L1Md_T LINE L1 6004 6040 -542 3 1165 284 269 8 25 chr12 76034887 76035009 -45222521 - Lx9 LINE L1 -8 7636 7517 3 1165 630 130 0 0 chr12 76035028 76035159 -45222371 + (GA)n Simple_repeat Simple_repeat 2 132 0 3 1165 1808 220 54 31 chr12 76035161 76035644 -45221886 - Lx9 LINE L1 -169 7475 6982 3 1165 297 0 0 0 chr12 76036150 76036183 -45221347 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1165 342 259 0 24 chr12 76036979 76037062 -45220468 - B4A SINE B4 0 292 212 4 1165 689 286 28 14 chr12 76037183 76037396 -45220134 - B3 SINE B2 0 216 1 4 1165 1146 95 0 0 chr12 76038182 76038329 -45219201 + B1_Mus2 SINE Alu 1 147 0 4 1165 462 288 25 75 chr12 76038344 76038584 -45218946 + Lx9 LINE L1 7229 7456 -188 4 1165 384 22 0 0 chr12 76038588 76038633 -45218897 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1165 30 45 0 0 chr12 76038731 76038775 -45218755 + AT_rich Low_complexity Low_complexity 1 44 0 4 1165 21 0 0 0 chr12 76039229 76039250 -45218280 + AT_rich Low_complexity Low_complexity 1 21 0 4 1165 492 18 0 0 chr12 76039637 76039694 -45217836 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1165 302 169 0 15 chr12 76039728 76039794 -45217736 + (CATA)n Simple_repeat Simple_repeat 2 66 0 4 1165 361 344 11 101 chr12 76039852 76040030 -45217500 + RSINE1 SINE B4 4 165 0 4 1165 594 251 6 0 chr12 76040030 76040360 -45217170 + (CA)n Simple_repeat Simple_repeat 1 332 0 5 1165 615 14 0 0 chr12 76040375 76040447 -45217083 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1165 229 329 46 23 chr12 76041736 76041823 -45215707 + ORR1D2 LTR MaLR 281 369 -1 5 1165 284 298 87 47 chr12 76042879 76043006 -45214524 - MLT1A1 LTR MaLR -9 399 268 5 1165 324 0 0 0 chr12 76043275 76043311 -45214219 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 5 1165 1203 48 0 14 chr12 76043882 76044029 -45213501 + B1_Mus1 SINE Alu 3 147 -1 5 1165 1584 259 67 27 chr12 76044034 76044923 -45212607 + Lx8 LINE L1 5447 6379 -1094 5 1165 1155 75 0 0 chr12 76045680 76045826 -45211704 - B1_Mus2 SINE Alu -1 146 1 5 1165 28 0 0 0 chr12 76045895 76045923 -45211607 + AT_rich Low_complexity Low_complexity 1 28 0 5 1165 1424 255 76 35 chr12 76046401 76046644 -45210886 + Lx9 LINE L1 7105 7344 -300 5 1165 3164 57 0 0 chr12 76046644 76047045 -45210485 + L1Md_F2 LINE L1 6182 6582 0 5 1165 1424 255 76 35 chr12 76047045 76047313 -45210217 + Lx9 LINE L1 7345 7637 -7 5 1165 27 0 0 0 chr12 76048055 76048082 -45209448 + AT_rich Low_complexity Low_complexity 1 27 0 6 1165 27 0 0 0 chr12 76048121 76048148 -45209382 + AT_rich Low_complexity Low_complexity 1 27 0 6 1165 207 266 25 25 chr12 76049248 76049329 -45208201 + GA-rich Low_complexity Low_complexity 1 81 0 6 1165 186 103 0 0 chr12 76049871 76049900 -45207630 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 6 1165 21 36 0 0 chr12 76051053 76051081 -45206449 + AT_rich Low_complexity Low_complexity 1 28 0 6 1165 186 43 0 0 chr12 76053481 76053504 -45204026 + (TCC)n Simple_repeat Simple_repeat 3 25 0 6 1165 229 311 16 0 chr12 76053705 76053766 -45203764 - B4A SINE B4 -139 153 92 6 1165 833 330 82 90 chr12 76053781 76054327 -45203203 + MLT2B3 LTR ERVL 10 551 -3 6 1165 274 301 106 78 chr12 76054551 76054807 -45202723 + MLT1A LTR MaLR 96 358 -16 6 1165 1111 148 119 0 chr12 76055169 76055371 -45202159 + URR1A DNA MER1_type 1 226 0 6 1165 261 0 0 0 chr12 76055576 76055605 -45201925 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1165 231 88 0 0 chr12 76056106 76056140 -45201390 + (CTTG)n Simple_repeat Simple_repeat 1 34 0 7 1165 219 336 88 63 chr12 76056429 76056588 -45200942 + MIRb SINE MIR 19 181 -87 7 1165 558 316 277 26 chr12 76057277 76057696 -45199834 - MER68 LTR ERVL 0 607 84 7 1165 13079 63 8 0 chr12 76058045 76059812 -45197718 + L1Md_F2 LINE L1 4180 5954 -628 7 1165 452 194 0 0 chr12 76059897 76059969 -45197561 + Lx7 LINE L1 6603 6674 -1022 7 1165 21 0 0 0 chr12 76060177 76060198 -45197332 + AT_rich Low_complexity Low_complexity 1 21 0 7 1165 414 162 0 0 chr12 76060235 76060309 -45197221 + (TA)n Simple_repeat Simple_repeat 1 74 0 7 1165 221 83 0 27 chr12 76060387 76060424 -45197106 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1165 4571 111 23 10 chr12 76060912 76061982 -45195548 - L1VL4 LINE L1 -2293 1266 188 7 1165 219 103 0 0 chr12 76063431 76063470 -45194060 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1165 289 43 43 0 chr12 76063520 76063567 -45193963 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1165 2202 181 40 2 chr12 76063725 76064130 -45193400 + MTC LTR MaLR 1 420 -1 8 1165 1203 200 68 97 chr12 76065381 76065468 -45192062 + MT2A LTR ERVL 1 80 -453 8 1165 248 70 23 0 chr12 76065468 76065511 -45192019 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 1165 1203 200 68 97 chr12 76065511 76065558 -45191972 + MT2A LTR ERVL 81 106 -427 8 1165 315 71 0 0 chr12 76065558 76065600 -45191930 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 8 1165 1203 203 69 95 chr12 76065600 76065811 -45191719 + MT2A LTR ERVL 107 475 -126 8 1165 371 267 106 29 chr12 76068778 76068948 -45188582 - L1_Rod LINE L1 -2449 3398 3216 8 1165 1043 290 34 9 chr12 76068937 76069257 -45188273 + Lx9 LINE L1 6610 6937 -707 8 1165 247 356 0 0 chr12 76069896 76069969 -45187561 - ID4_ SINE ID 0 83 11 8 1165 1857 222 3 0 chr12 76071108 76071460 -45186070 - MTD LTR MaLR -64 355 3 8 1165 300 257 53 93 chr12 76071692 76071723 -45185807 + L1MEg LINE L1 1884 1913 -4171 9 1165 750 43 0 0 chr12 76071723 76071817 -45185713 + (GA)n Simple_repeat Simple_repeat 1 94 0 9 1165 300 257 53 93 chr12 76071817 76071935 -45185595 + L1MEg LINE L1 1914 2027 -4057 9 1165 479 296 52 23 chr12 76072071 76072354 -45185176 + L1M2 LINE L1 2331 2620 -3523 9 1165 759 305 109 41 chr12 76072914 76073181 -45184349 + B4 SINE B4 8 292 0 9 1165 228 135 0 0 chr12 76073549 76073586 -45183944 + (A)n Simple_repeat Simple_repeat 1 37 0 9 1165 848 10 0 10 chr12 76074090 76074192 -45183338 + (GAA)n Simple_repeat Simple_repeat 2 102 0 9 1165 191 231 9 61 chr12 76074875 76074990 -45182540 + G-rich Low_complexity Low_complexity 1 109 0 9 1165 585 150 0 0 chr12 76075221 76075321 -45182209 + (A)n Simple_repeat Simple_repeat 1 100 0 9 1165 510 17 0 0 chr12 76076233 76076292 -45181238 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 9 1165 527 29 14 0 chr12 76076292 76076360 -45181170 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 9 1165 227 336 46 9 chr12 76077825 76077933 -45179597 - L2c LINE L2 -40 3347 3236 1 1165 713 160 47 191 chr12 76078021 76078299 -45179231 + Lx9 LINE L1 7405 7642 -2 1 1165 464 117 13 0 chr12 76079372 76079449 -45178081 + (GAA)n Simple_repeat Simple_repeat 1 78 0 1 1165 241 257 8 139 chr12 76079465 76079587 -45177943 - Charlie15a DNA MER1_type -5 219 114 1 1165 195 320 25 25 chr12 76079768 76079848 -45177682 - MIRm SINE MIR -124 152 73 1 1165 215 133 22 0 chr12 76081849 76081894 -45175636 + GA-rich Low_complexity Low_complexity 1 46 0 1 1165 226 282 11 133 chr12 76082345 76082435 -45175095 + RSINE1 SINE B4 2 80 -85 1 1165 232 245 0 19 chr12 76082920 76082974 -45174556 + MER46C DNA MER2_type 279 331 -7 1 1165 1085 279 49 12 chr12 76083099 76083510 -45174020 + L1MB8 LINE L1 5708 6134 -44 1 1165 22 0 0 0 chr12 76083645 76083667 -45173863 + AT_rich Low_complexity Low_complexity 1 22 0 1 1165 6571 98 16 2 chr12 76083676 76084771 -45172759 + L1VL4 LINE L1 1 1112 -2447 1 1165 1185 104 0 0 chr12 76084767 76084940 -45172590 + L1_Mm LINE L1 3860 4032 -1851 1 1165 2253 203 28 4 chr12 76084921 76085382 -45172148 + Lx LINE L1 6155 6626 -28 1 1165 198 0 0 0 chr12 76085397 76085419 -45172111 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 1165 986 303 117 27 chr12 76086848 76088209 -45169321 + L1MD2 LINE L1 4365 5849 -330 1 1165 484 244 37 85 chr12 76089071 76089259 -45168271 + B3A SINE B2 4 182 -16 1 1165 624 238 0 0 chr12 76089259 76089561 -45167969 + (CA)n Simple_repeat Simple_repeat 1 302 0 1 1165 355 264 0 26 chr12 76089526 76089678 -45167852 + (CATA)n Simple_repeat Simple_repeat 4 151 0 1 1165 231 207 17 33 chr12 76090764 76090824 -45166706 + L1MEg1 LINE L1 28 86 -6149 1 1165 229 362 127 14 chr12 76091169 76091452 -45166078 + L2 LINE L2 1935 2249 -1170 1 1165 22 35 0 0 chr12 76092139 76092168 -45165362 + AT_rich Low_complexity Low_complexity 1 29 0 1 1165 338 22 43 0 chr12 76092724 76092770 -45164760 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1 1165 446 195 97 8 chr12 76092770 76092894 -45164636 - Lx9 LINE L1 -11 7633 7499 1 1165 1386 241 33 7 chr12 76092909 76093214 -45164316 - Lx6 LINE L1 -1 7459 7147 1 1165 3430 28 2 0 chr12 76093306 76093701 -45163829 - MTA_Mm LTR MaLR 0 396 1 1 1165 327 223 139 62 chr12 76095216 76095269 -45162261 + RMER15 LTR ERVL 346 408 -167 1 1165 2177 160 52 12 chr12 76095269 76095674 -45161856 + MTC LTR MaLR 1 421 0 1 1165 327 223 139 62 chr12 76095674 76095749 -45161781 + RMER15 LTR ERVL 409 484 -91 1 1165 207 162 0 0 chr12 76096326 76096363 -45161167 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1165 791 245 49 5 chr12 76098064 76098269 -45159261 + B3 SINE B2 3 216 0 1 1165 204 40 0 0 chr12 76099826 76099851 -45157679 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 1 1165 510 327 134 27 chr12 76100069 76100330 -45157200 + B4A SINE B4 2 290 -2 1 1165 438 20 0 0 chr12 76100332 76100383 -45157147 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1165 495 0 0 0 chr12 76100619 76100674 -45156856 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1165 438 108 0 0 chr12 76100709 76100783 -45156747 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 1 1165 273 239 33 33 chr12 76100784 76100875 -45156655 + CT-rich Low_complexity Low_complexity 4 94 0 1 1165 219 69 0 0 chr12 76100997 76101026 -45156504 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 1 1165 25 31 0 0 chr12 76103218 76103250 -45154280 + AT_rich Low_complexity Low_complexity 1 32 0 1 1165 21 36 0 0 chr12 76103451 76103479 -45154051 + AT_rich Low_complexity Low_complexity 1 28 0 1 1165 949 230 266 0 chr12 76104195 76104530 -45153000 - Lx9 LINE L1 -4 7640 7217 1 1165 1619 203 58 12 chr12 76104527 76104856 -45152674 + Lx9 LINE L1 6592 6935 -709 1 1165 24 32 0 0 chr12 76104923 76104954 -45152576 + AT_rich Low_complexity Low_complexity 1 31 0 1 1165 660 272 10 68 chr12 76105009 76105032 -45152498 - B3A SINE B2 -1 197 179 1 1165 855 78 0 0 chr12 76105032 76105161 -45152369 + (TC)n Simple_repeat Simple_repeat 2 130 0 1 1165 660 272 10 68 chr12 76105161 76105229 -45152301 - B3A SINE B2 -20 178 119 1 1165 1310 154 4 26 chr12 76105229 76105455 -45152075 + URR1B DNA MER1_type 5 225 0 1 1165 660 272 10 68 chr12 76105455 76105567 -45151963 - B3A SINE B2 -80 118 5 1 1165 367 236 94 67 chr12 76106045 76106268 -45151262 - L1MA4 LINE L1 -260 6040 5812 1 1165 816 248 57 16 chr12 76106283 76106529 -45151001 - L1MA4 LINE L1 -567 5730 5475 1 1165 459 0 0 0 chr12 76106648 76106699 -45150831 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1165 351 65 0 0 chr12 76106699 76106744 -45150786 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1165 2367 77 0 3 chr12 76107335 76107649 -45149881 + L1_Mus2 LINE L1 6254 6566 0 1 1165 797 30 0 10 chr12 76107650 76107750 -45149780 + L1_Mm LINE L1 2086 2184 -3699 1 1165 1152 146 58 10 chr12 76107758 76107965 -45149565 - Lx2B LINE L1 -15 6985 6769 1 1165 297 89 0 0 chr12 76107972 76108017 -45149513 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1165 692 293 12 6 chr12 76108034 76108199 -45149331 - B3A SINE B2 -32 166 1 1 1165 195 100 0 0 chr12 76108544 76108574 -45148956 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 1165 381 58 0 0 chr12 76109150 76109202 -45148328 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1165 542 253 18 37 chr12 76109205 76109369 -45148161 - RSINE1 SINE B4 -1 164 4 1 1165 180 0 0 0 chr12 76110042 76110062 -45147468 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1165 281 250 11 0 chr12 76111772 76111864 -45145666 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1165 230 331 74 53 chr12 76111880 76111942 -45145588 + L1M4c LINE L1 2401 2450 -4399 1 1165 1203 133 113 0 chr12 76111942 76112145 -45145385 + URR1A DNA MER1_type 1 226 0 1 1165 231 314 100 28 chr12 76112145 76112366 -45145164 + L1M4c LINE L1 2053 2190 -4660 1 1165 265 279 56 49 chr12 76112820 76112963 -45144567 + L1M4c LINE L1 2812 2955 -3890 1 1165 283 261 87 0 chr12 76113713 76113782 -45143748 + MLT1G1 LTR MaLR 8 82 -473 1 1165 438 338 67 45 chr12 76114108 76114331 -45143199 + MLT1G1 LTR MaLR 351 578 -1 1 1165 256 189 132 26 chr12 76114542 76114618 -45142912 + Lx8 LINE L1 7381 7464 -9 1 1165 1376 257 14 19 chr12 76114771 76115132 -45142398 - Lx9 LINE L1 -221 7423 7065 1 1165 565 218 7 14 chr12 76115133 76115277 -45142253 + Lx9 LINE L1 7495 7637 -7 1 1165 27 0 0 0 chr12 76115406 76115433 -45142097 + AT_rich Low_complexity Low_complexity 1 27 0 1 1165 436 321 40 94 chr12 76116985 76117299 -45140231 + B4 SINE B4 18 286 -6 1 1165 23 0 0 0 chr12 76117366 76117389 -45140141 + AT_rich Low_complexity Low_complexity 1 23 0 1 1165 210 37 0 0 chr12 76120889 76120916 -45136614 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1165 1100 82 0 26 chr12 76120929 76121080 -45136450 - B1_Mus1 SINE Alu 0 148 2 1 1165 186 43 0 0 chr12 76121445 76121468 -45136062 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1165 293 239 14 0 chr12 76121487 76121558 -45135972 - MER103 DNA DNA -10 156 85 1 1165 3076 100 30 2 chr12 76122152 76122611 -45134919 - L1_Mus4 LINE L1 0 6636 6165 1 1165 257 375 59 17 chr12 76123970 76124206 -45133324 + L2 LINE L2 2640 2885 -534 1 1165 1190 87 6 0 chr12 76124505 76124678 -45132852 + (TGGA)n Simple_repeat Simple_repeat 3 176 0 1 1165 252 100 0 0 chr12 76125639 76125679 -45131851 + (TTG)n Simple_repeat Simple_repeat 3 42 0 1 1165 1199 207 68 3 chr12 76125764 76126074 -45131456 - Lx9 LINE L1 0 7644 7315 1 1165 408 40 0 0 chr12 76127974 76128024 -45129506 + (TAA)n Simple_repeat Simple_repeat 3 52 0 1 1165 21 0 0 0 chr12 76128290 76128311 -45129219 + AT_rich Low_complexity Low_complexity 1 21 0 1 1165 30 0 0 0 chr12 76128708 76128738 -45128792 + AT_rich Low_complexity Low_complexity 1 30 0 1 1165 921 142 0 0 chr12 76128852 76129007 -45128523 + (GA)n Simple_repeat Simple_repeat 2 156 0 1 1165 535 287 21 49 chr12 76129335 76129435 -45128095 - RSINE1 SINE B4 -25 140 44 1 1165 2152 143 241 43 chr12 76129435 76130011 -45127519 + RMER6C LTR ERVK 1 690 0 1 1165 535 287 21 49 chr12 76130011 76130053 -45127477 - RSINE1 SINE B4 -122 43 2 1 1165 21 36 0 0 chr12 76131032 76131060 -45126470 + AT_rich Low_complexity Low_complexity 1 28 0 1 1165 664 79 0 10 chr12 76131390 76131492 -45126038 + Lx LINE L1 6546 6646 -8 1 1165 992 260 56 56 chr12 76131884 76132259 -45125271 + Lx8 LINE L1 7096 7470 -3 1 1165 22 70 0 0 chr12 76132259 76132302 -45125228 + AT_rich Low_complexity Low_complexity 1 43 0 1 1165 814 288 13 43 chr12 76132460 76132761 -45124769 + B4A SINE B4 1 292 0 1 1165 231 36 0 0 chr12 76134641 76134669 -45122861 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1165 297 273 15 0 chr12 76135182 76135248 -45122282 + RSINE1 SINE B4 18 84 -81 1 1165 645 14 0 0 chr12 76135277 76135351 -45122179 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1165 699 12 0 0 chr12 76135785 76135865 -45121665 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1165 520 304 14 49 chr12 76137268 76137514 -45120016 + B4A SINE B4 8 290 -2 1 1165 456 163 0 0 chr12 76137553 76137639 -45119891 + (TGAA)n Simple_repeat Simple_repeat 4 89 0 1 1165 681 13 0 0 chr12 76138111 76138189 -45119341 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1165 327 280 32 77 chr12 76139270 76139509 -45118021 - L1MA4A LINE L1 -278 6022 5797 1 1165 276 30 0 0 chr12 76139512 76139545 -45117985 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1165 546 303 23 0 chr12 76140391 76140523 -45117007 + RSINE1 SINE B4 11 145 -20 1 1165 375 78 0 0 chr12 76140532 76140583 -45116947 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1165 440 164 0 9 chr12 76140901 76141012 -45116518 + CT-rich Low_complexity Low_complexity 2 111 0 1 1165 261 0 0 0 chr12 76141025 76141054 -45116476 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1165 441 0 0 0 chr12 76141772 76141821 -45115709 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1165 317 191 24 0 chr12 76141831 76141893 -45115637 - ID4_ SINE ID -11 72 7 1 1165 231 36 0 0 chr12 76142022 76142050 -45115480 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2 1165 21 0 0 0 chr12 76143344 76143365 -45114165 + AT_rich Low_complexity Low_complexity 1 21 0 2 1165 322 311 38 44 chr12 76143673 76143831 -45113699 + L1MEe LINE L1 752 908 -3946 2 1165 4828 83 36 19 chr12 76143881 76144580 -45112950 + L1_Mus3 LINE L1 5928 6638 0 2 1165 796 248 19 29 chr12 76145606 76145814 -45111716 + B3 SINE B2 5 210 -6 2 1165 727 167 12 0 chr12 76146322 76146484 -45111046 + (TA)n Simple_repeat Simple_repeat 2 165 0 2 1165 1071 171 0 5 chr12 76147182 76147394 -45110136 + Lx2 LINE L1 6786 6996 -1 2 1165 1089 110 0 0 chr12 76147408 76147571 -45109959 + (GGGAGA)n Simple_repeat Simple_repeat 5 167 0 2 1165 828 101 0 0 chr12 76147571 76147699 -45109831 + (GGAA)n Simple_repeat Simple_repeat 1 129 0 2 1165 192 77 0 0 chr12 76148210 76148236 -45109294 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2 1165 239 0 32 0 chr12 76148779 76148810 -45108720 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 2 1165 588 309 79 11 chr12 76148940 76149130 -45108400 + B3 SINE B2 1 203 -13 2 1165 28 0 0 0 chr12 76149174 76149202 -45108328 + AT_rich Low_complexity Low_complexity 1 28 0 2 1165 205 232 146 78 chr12 76149672 76149775 -45107755 - L3 LINE CR1 -1167 3322 3213 2 1165 213 324 14 0 chr12 76150122 76150193 -45107337 + ID4 SINE ID 1 72 -11 2 1165 204 67 0 0 chr12 76150193 76150223 -45107307 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1165 190 200 47 0 chr12 76150275 76150360 -45107170 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 2 1165 3149 58 2 10 chr12 76150524 76150923 -45106607 + MTA_Mm LTR MaLR 1 396 0 2 1165 316 247 13 13 chr12 76151348 76151426 -45106104 + PB1D9 SINE Alu 18 95 -25 2 1165 914 239 5 36 chr12 76151457 76151678 -45105852 + B3 SINE B2 1 214 -2 2 1165 507 17 0 0 chr12 76152594 76152654 -45104876 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 2 1166 214 312 0 38 chr12 76153324 76153404 -45104126 + (TATG)n Simple_repeat Simple_repeat 4 80 0 2 1166 2020 223 98 33 chr12 76153566 76153603 -45103927 + Lx9 LINE L1 7024 7057 -587 2 1166 1363 184 58 63 chr12 76153603 76153892 -45103638 + RMER17C LTR ERVK 1 278 -132 2 1166 405 0 0 0 chr12 76153892 76153937 -45103593 + (CTATA)n Simple_repeat Simple_repeat 3 47 0 2 1166 1363 184 58 63 chr12 76153937 76154059 -45103471 + RMER17C LTR ERVK 279 409 -1 2 1166 2020 223 98 33 chr12 76154059 76154604 -45102926 + Lx9 LINE L1 7058 7644 0 2 1166 702 35 0 0 chr12 76155281 76155366 -45102164 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1166 190 284 33 107 chr12 76155702 76155824 -45101706 + L2 LINE L2 2958 3070 -349 2 1166 468 306 92 75 chr12 76156123 76156190 -45101340 - ORR1E LTR MaLR -4 355 290 2 1166 3145 111 0 2 chr12 76156190 76156640 -45100890 - Lx2 LINE L1 0 6997 6549 2 1166 468 306 92 75 chr12 76156640 76156921 -45100609 - ORR1E LTR MaLR -70 289 2 2 1166 208 259 0 0 chr12 76157391 76157445 -45100085 + T-rich Low_complexity Low_complexity 1 54 0 2 1166 1434 243 81 20 chr12 76157682 76158077 -45099453 - MTD LTR MaLR 0 419 1 2 1166 224 316 65 25 chr12 76158490 76158677 -45098853 - MIRb SINE MIR -52 216 14 2 1166 214 278 156 9 chr12 76160293 76160402 -45097128 + MIR SINE MIR 17 141 -121 2 1166 236 331 42 14 chr12 76160878 76160986 -45096544 + Lx9 LINE L1 7316 7427 -217 2 1166 646 0 48 0 chr12 76160986 76161070 -45096460 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 2 1166 236 331 42 14 chr12 76161070 76161105 -45096425 + Lx9 LINE L1 7428 7462 -182 2 1166 316 246 136 15 chr12 76161106 76161238 -45096292 + RLTR22_Mur LTR ERVK 1307 1454 -394 2 1166 29 60 0 0 chr12 76161316 76161366 -45096164 + AT_rich Low_complexity Low_complexity 1 50 0 2 1166 234 0 0 0 chr12 76161405 76161431 -45096099 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1166 277 82 20 20 chr12 76161490 76161540 -45095990 + (GGGAGA)n Simple_repeat Simple_repeat 3 52 0 2 1166 26 30 0 0 chr12 76161735 76161768 -45095762 + AT_rich Low_complexity Low_complexity 1 33 0 2 1166 237 298 140 37 chr12 76162328 76162464 -45095066 + MIR SINE MIR 64 213 -49 2 1166 399 291 51 0 chr12 76164082 76164199 -45093331 + B1_Mus2 SINE Alu 25 147 0 2 1166 1945 256 114 42 chr12 76164199 76164581 -45092949 + L1MA9 LINE L1 5354 5763 -549 2 1166 1719 191 65 25 chr12 76164581 76164984 -45092546 - MTD LTR MaLR 0 419 1 2 1166 1945 256 114 42 chr12 76164984 76165495 -45092035 + L1MA9 LINE L1 5764 6311 -1 2 1166 566 260 96 25 chr12 76166658 76166855 -45090675 - MLT1A LTR MaLR -7 367 157 2 1166 307 360 14 42 chr12 76166963 76167105 -45090425 - MLT1A LTR MaLR -214 160 23 2 1166 804 282 14 18 chr12 76167326 76167543 -45089987 + B4 SINE B4 5 220 -72 2 1166 475 248 69 0 chr12 76167774 76167875 -45089655 - MIR SINE MIR -34 228 121 2 1166 803 353 105 48 chr12 76167889 76168475 -45089055 + L2 LINE L2 1957 2602 -817 2 1166 475 239 14 174 chr12 76168475 76168693 -45088837 + B3A SINE B2 1 183 -15 2 1166 803 353 105 48 chr12 76168693 76168966 -45088564 + L2 LINE L2 2603 2865 -554 2 1166 272 291 65 18 chr12 76170067 76170235 -45087295 + HAL1 LINE L1 1975 2150 -357 2 1166 686 269 65 0 chr12 76171184 76171385 -45086145 + ID_B1 SINE B4 1 214 -10 2 1166 31 0 0 0 chr12 76171459 76171490 -45086040 + AT_rich Low_complexity Low_complexity 1 31 0 2 1166 372 298 76 90 chr12 76172031 76172175 -45085355 + B4 SINE B4 10 151 -141 2 1166 241 342 13 26 chr12 76172195 76172273 -45085257 + RSINE1 SINE B4 73 149 -16 2 1166 351 0 0 0 chr12 76172285 76172324 -45085206 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1166 587 296 89 22 chr12 76172408 76172732 -45084798 + Lx8 LINE L1 6972 7317 -156 2 1166 295 263 121 17 chr12 76174319 76174435 -45083095 + L2 LINE L2 2689 2816 -603 2 1166 264 221 143 0 chr12 76174441 76174518 -45083012 + PB1D10 SINE Alu 28 115 -2 2 1166 345 217 0 0 chr12 76174525 76174670 -45082860 + GA-rich Low_complexity Low_complexity 1 145 0 2 1166 309 51 0 0 chr12 76174711 76174750 -45082780 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1166 543 135 0 0 chr12 76174749 76174845 -45082685 + (CA)n Simple_repeat Simple_repeat 1 96 0 2 1166 595 213 8 8 chr12 76176528 76176651 -45080879 - RCHARR1 DNA MER1_type -4 970 848 2 1166 687 254 151 5 chr12 76176689 76176895 -45080635 - RCHARR1 DNA MER1_type -736 238 3 2 1166 184 322 72 32 chr12 76177150 76177275 -45080255 + L2 LINE L2 2677 2806 -613 2 1166 441 0 0 0 chr12 76177414 76177463 -45080067 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1166 495 0 0 0 chr12 76177710 76177765 -45079765 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1166 327 329 34 41 chr12 76180821 76180967 -45076563 + RMER15 LTR ERVL 276 420 -155 2 1166 315 280 244 58 chr12 76181335 76181540 -45075990 + HAL1-3A_ME LINE L1 1976 2218 -640 2 1166 966 232 43 43 chr12 76182116 76182350 -45075180 - RMER15 LTR ERVL -2 573 340 2 1166 1321 206 157 152 chr12 76182350 76182821 -45074709 - MT2A LTR ERVL -73 460 3 2 1166 21 36 0 0 chr12 76182859 76182887 -45074643 + AT_rich Low_complexity Low_complexity 1 28 0 2 1166 216 392 49 25 chr12 76182969 76183131 -45074399 - L2 LINE L2 -564 2855 2690 2 1166 305 291 53 35 chr12 76183294 76183408 -45074122 + L1MD2 LINE L1 5630 5745 -614 2 1166 9196 166 34 14 chr12 76183446 76185135 -45072395 + MERVL_2A-int LTR ERVL 2224 3946 -1815 2 1166 360 288 100 44 chr12 76185595 76185846 -45071684 + L1MD2 LINE L1 5743 6007 -352 2 1166 1043 282 142 3 chr12 76185924 76186248 -45071282 - ORR1D2 LTR MaLR 0 370 2 2 1166 211 239 83 14 chr12 76186253 76186325 -45071205 - ID4_ SINE ID -6 77 1 2 1166 229 330 11 38 chr12 76186965 76187148 -45070382 + CT-rich Low_complexity Low_complexity 1 178 0 2 1166 269 133 367 0 chr12 76187295 76187355 -45070175 + URR1A DNA MER1_type 2 83 -143 2 1166 29 0 0 0 chr12 76187887 76187916 -45069614 + AT_rich Low_complexity Low_complexity 1 29 0 2 1166 638 272 224 75 chr12 76190028 76190282 -45067248 + B4 SINE B4 1 292 0 2 1166 865 134 0 38 chr12 76190310 76190496 -45067034 + GA-rich Low_complexity Low_complexity 2 180 0 2 1166 269 322 64 11 chr12 76190638 76190732 -45066798 - L2b LINE L2 -20 3355 3257 2 1166 252 331 99 46 chr12 76192324 76192476 -45065054 + L3 LINE CR1 3817 3976 -513 2 1166 255 323 76 20 chr12 76192794 76192932 -45064598 - MIR SINE MIR -24 244 85 2 1166 340 279 113 7 chr12 76193727 76193982 -45063548 + L1ME3B LINE L1 5738 6009 -164 2 1166 645 346 45 15 chr12 76194959 76195248 -45062282 + MLT1H LTR MaLR 1 290 -259 2 1166 1832 145 7 30 chr12 76195974 76196279 -45061251 + MTB_Mm LTR MaLR 1 298 -109 2 1166 198 330 64 0 chr12 76196377 76196486 -45061044 + L2b LINE L2 2593 2708 -711 2 1166 576 101 0 0 chr12 76197502 76197591 -45059939 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 2 1166 280 391 54 33 chr12 76197875 76198116 -45059414 + L2b LINE L2 2912 3157 -218 2 1166 1138 244 111 3 chr12 76198282 76198660 -45058870 + MTD LTR MaLR 1 419 0 2 1166 255 215 0 30 chr12 76198661 76198728 -45058802 - MLT2B1 LTR ERVL 0 567 503 2 1166 464 326 105 67 chr12 76198796 76199264 -45058266 - MLT2B5 LTR ERVL -43 558 74 2 1166 512 310 234 59 chr12 76199584 76199997 -45057533 + MER67D LTR ERV1 25 509 -5 2 1166 553 311 75 20 chr12 76200536 76200841 -45056689 + Lx8 LINE L1 7147 7468 -5 2 1166 331 358 32 0 chr12 76201019 76201142 -45056388 + B1F SINE Alu 2 128 -21 2 1166 270 304 33 0 chr12 76201144 76201236 -45056294 + GA-rich Low_complexity Low_complexity 1 95 0 2 1166 334 278 85 58 chr12 76201506 76201766 -45055764 + MER110A LTR ERV1 2 268 -200 2 1166 240 302 16 0 chr12 76201757 76201820 -45055710 + tRNA-Ala-GCY_ tRNA tRNA 5 68 -7 2 1166 250 295 68 123 chr12 76201834 76202070 -45055460 + MER110A LTR ERV1 244 466 -2 2 1166 596 230 52 34 chr12 76202305 76202562 -45054968 - Lx4B LINE L1 -5 7053 6694 2 1166 306 282 55 0 chr12 76202599 76202709 -45054821 + LTR87 LTR ERVL? 504 619 -5 2 1166 423 83 0 0 chr12 76202728 76202788 -45054742 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 2 1166 335 264 33 0 chr12 76202788 76202879 -45054651 - B1_Mus2 SINE Alu -14 133 40 3 1166 287 207 17 33 chr12 76202927 76202987 -45054543 - B1_Mus2 SINE Alu -88 59 1 3 1166 394 338 142 16 chr12 76204311 76204627 -45052903 + L1MC LINE L1 2749 3104 -3042 3 1166 1162 281 87 72 chr12 76204669 76205706 -45051824 + L1MC LINE L1 3145 4196 -1950 3 1166 258 248 77 103 chr12 76205741 76205858 -45051672 + B1_Mur4 SINE Alu 17 130 -20 3 1166 219 337 23 0 chr12 76205951 76206037 -45051493 + (CATG)n Simple_repeat Simple_repeat 2 89 0 3 1166 927 264 39 66 chr12 76206051 76206534 -45050996 + L1MC LINE L1 4485 4954 -1192 3 1166 540 260 24 5 chr12 76207208 76207413 -45050117 + L1M3 LINE L1 4584 4792 -1348 3 1166 1212 210 182 25 chr12 76207461 76207575 -45049955 - Lx9 LINE L1 0 7644 7479 3 1166 687 44 0 0 chr12 76207575 76207666 -45049864 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 1166 1212 210 182 25 chr12 76207666 76207985 -45049545 - Lx9 LINE L1 -166 7478 7144 3 1166 883 296 108 48 chr12 76207997 76208403 -45049127 + L1_Rod LINE L1 4795 5209 -638 3 1166 234 91 0 0 chr12 76208403 76208436 -45049094 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1166 459 0 0 0 chr12 76208436 76208486 -45049044 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 3 1166 1120 262 70 14 chr12 76208486 76208983 -45048547 + L1_Rod LINE L1 5210 5822 -478 3 1166 1021 213 18 36 chr12 76210948 76211167 -45046363 + B3 SINE B2 2 216 0 3 1166 378 327 100 47 chr12 76211669 76211948 -45045582 + HAL1 LINE L1 1108 1401 -1106 3 1166 381 318 26 10 chr12 76212008 76212202 -45045328 + HAL1 LINE L1 1443 1639 -868 3 1166 23 0 0 0 chr12 76212585 76212608 -45044922 + AT_rich Low_complexity Low_complexity 1 23 0 3 1166 364 316 77 15 chr12 76212745 76212941 -45044589 - LTR16B1 LTR ERVL -3 477 270 3 1166 230 256 13 0 chr12 76213012 76213090 -45044440 + Lx9 LINE L1 7530 7608 -36 3 1166 247 291 80 26 chr12 76213666 76213779 -45043751 + MLT1A1 LTR MaLR 276 394 -14 3 1166 798 67 0 0 chr12 76213790 76213895 -45043635 + (TCTCCC)n Simple_repeat Simple_repeat 4 108 0 3 1166 442 284 39 24 chr12 76213899 76214105 -45043425 - L1MA8 LINE L1 -154 6137 5929 3 1166 308 248 0 8 chr12 76214794 76214912 -45042618 + CT-rich Low_complexity Low_complexity 3 119 0 3 1166 21 0 0 0 chr12 76215000 76215021 -45042509 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 678 85 0 0 chr12 76216458 76216552 -45040978 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 3 1166 1139 52 0 0 chr12 76216552 76216686 -45040844 - B1_Mus2 SINE Alu -12 135 2 3 1166 261 0 0 0 chr12 76216882 76216911 -45040619 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1166 354 123 0 0 chr12 76217610 76217667 -45039863 + (GGA)n Simple_repeat Simple_repeat 2 58 0 3 1166 257 368 0 0 chr12 76217677 76217802 -45039728 + G-rich Low_complexity Low_complexity 6 130 0 3 1166 1072 106 6 6 chr12 76219008 76219188 -45038342 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1166 205 232 14 14 chr12 76219188 76219244 -45038286 + GA-rich Low_complexity Low_complexity 2 58 0 3 1166 1391 50 0 6 chr12 76219244 76219425 -45038105 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1166 205 232 14 14 chr12 76219425 76219438 -45038092 + polypurine Low_complexity Low_complexity 59 71 0 3 1166 261 0 0 0 chr12 76219694 76219723 -45037807 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1166 465 19 0 0 chr12 76219723 76219776 -45037754 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1166 626 294 29 0 chr12 76219795 76219931 -45037599 - RSINE1 SINE B4 -22 143 4 3 1166 291 28 0 0 chr12 76220153 76220189 -45037341 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1166 423 0 0 0 chr12 76220198 76220245 -45037285 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 3 1166 1535 135 17 34 chr12 76220380 76220672 -45036858 + RLTR31_Mm LTR ERVK 1 287 -274 3 1166 786 120 0 0 chr12 76220694 76220819 -45036711 + (TAGA)n Simple_repeat Simple_repeat 2 126 0 3 1166 249 383 100 0 chr12 76221497 76221617 -45035913 + MLT1J2 LTR MaLR 267 398 -50 3 1166 398 291 41 86 chr12 76221820 76222064 -45035466 - LTR90B LTR LTR -2 794 562 3 1166 210 91 0 0 chr12 76222803 76222836 -45034694 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1166 21 0 0 0 chr12 76223164 76223185 -45034345 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 234 325 103 63 chr12 76226452 76226626 -45030904 + L2 LINE L2 1232 1412 -2007 3 1166 238 286 177 14 chr12 76228002 76228088 -45029442 - L1MD LINE L1 -2178 3968 3880 3 1166 449 34 0 17 chr12 76228088 76228148 -45029382 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 3 1166 238 286 177 14 chr12 76228148 76228338 -45029192 - L1MD LINE L1 -2267 3879 3648 3 1166 373 271 47 29 chr12 76228369 76228540 -45028990 - Lx8 LINE L1 -365 7108 6935 3 1166 1076 76 21 0 chr12 76228752 76228897 -45028633 + B1_Mus1 SINE Alu 1 148 0 3 1166 1124 250 69 75 chr12 76229016 76229652 -45027878 - L1MC LINE L1 -2847 3299 2668 3 1166 203 271 0 0 chr12 76229826 76229874 -45027656 + GA-rich Low_complexity Low_complexity 2 49 0 3 1166 21 0 0 0 chr12 76230148 76230169 -45027361 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 180 0 0 0 chr12 76231530 76231550 -45025980 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 3 1166 189 107 0 0 chr12 76231803 76231831 -45025699 + (GGA)n Simple_repeat Simple_repeat 2 29 0 3 1166 385 324 20 54 chr12 76232152 76232299 -45025231 + B1F SINE Alu 1 142 -7 3 1166 229 258 0 165 chr12 76232329 76232408 -45025122 + ID4_ SINE ID 2 67 -16 3 1166 4672 47 2 3 chr12 76234680 76235253 -45022277 + L1Md_F2 LINE L1 5999 6570 -12 3 1166 24 0 0 0 chr12 76235363 76235387 -45022143 + AT_rich Low_complexity Low_complexity 1 24 0 3 1166 331 229 38 9 chr12 76236115 76236221 -45021309 - Lx6 LINE L1 -12 7448 7340 3 1166 397 232 48 8 chr12 76236222 76236348 -45021182 + C-rich Low_complexity Low_complexity 1 131 0 3 1166 879 230 48 36 chr12 76236387 76236717 -45020813 - Lx7 LINE L1 -198 7498 7165 3 1166 392 158 0 13 chr12 76236739 76236816 -45020714 + GA-rich Low_complexity Low_complexity 2 77 0 3 1166 579 293 48 10 chr12 76237205 76237495 -45020035 + L1MA7 LINE L1 5518 5818 -473 3 1166 654 268 71 52 chr12 76237504 76237772 -45019758 + B4A SINE B4 2 274 -18 3 1166 207 183 0 53 chr12 76237785 76237860 -45019670 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 3 1166 409 284 47 16 chr12 76237945 76238138 -45019392 + L1MA7 LINE L1 6061 6259 -32 3 1166 1069 207 25 0 chr12 76238168 76238371 -45019159 + B3 SINE B2 1 208 -8 3 1166 955 339 39 30 chr12 76239139 76239546 -45017984 + Tigger7 DNA MER2_type 1 411 -2080 3 1166 581 270 93 28 chr12 76239533 76239781 -45017749 + Tigger7 DNA MER2_type 2225 2488 -3 3 1166 581 316 65 25 chr12 76239782 76240058 -45017472 + Tigger6a DNA MER2_type 179 465 -618 3 1166 492 18 0 0 chr12 76241122 76241179 -45016351 + (GGAAA)n Simple_repeat Simple_repeat 3 59 0 3 1166 311 209 64 37 chr12 76241253 76241362 -45016168 + Lx7 LINE L1 5543 5688 -2008 3 1166 663 294 65 41 chr12 76241368 76241878 -45015652 + L1M2c LINE L1 1654 2175 -4674 3 1166 619 280 16 2 chr12 76241887 76242136 -45015394 - Lx7 LINE L1 -420 5880 5594 3 1166 1025 270 5 9 chr12 76242177 76242401 -45015129 + ID_B1 SINE B4 1 223 -1 3 1166 539 311 108 39 chr12 76242424 76243061 -45014469 + L1M2c LINE L1 2179 2859 -3990 3 1166 382 251 199 55 chr12 76243083 76243319 -45014211 + L1M2c LINE L1 2878 3147 -3698 3 1166 240 246 15 60 chr12 76243375 76243509 -45014021 + ORR1B1-int LTR MaLR 627 754 -755 3 1166 1080 63 0 7 chr12 76243406 76243550 -45013980 + B1_Mus1 SINE Alu 6 148 0 3 1166 284 310 25 43 chr12 76243582 76243744 -45013786 + L1M2c LINE L1 3187 3345 -3500 3 1166 1156 302 76 24 chr12 76243725 76244555 -45012975 + L1M2c LINE L1 4674 5546 -1299 3 1166 430 202 5 43 chr12 76244594 76244780 -45012750 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1166 361 111 0 53 chr12 76244843 76244900 -45012630 + HAL1-3A_ME LINE L1 1974 2027 -831 3 1166 319 329 28 9 chr12 76244940 76245155 -45012375 + L1M2c LINE L1 5616 5834 -1011 3 1166 225 271 84 14 chr12 76245204 76245346 -45012184 + L1M2c LINE L1 5939 6090 -755 3 1166 26 50 0 0 chr12 76245417 76245457 -45012073 + AT_rich Low_complexity Low_complexity 1 40 0 3 1166 432 0 0 0 chr12 76245461 76245509 -45012021 + (CATA)n Simple_repeat Simple_repeat 1 48 0 3 1166 2563 88 21 3 chr12 76246242 76246624 -45010906 - L1_Mm LINE L1 -637 5246 4857 3 1166 6200 79 2 7 chr12 76246624 76247455 -45010075 + L1_Mus1 LINE L1 5741 6567 0 3 1166 477 0 0 0 chr12 76248021 76248074 -45009456 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1166 22 0 0 0 chr12 76249609 76249631 -45007899 + AT_rich Low_complexity Low_complexity 1 22 0 3 1166 3747 145 83 5 chr12 76250164 76250801 -45006729 + Lx4A LINE L1 6370 7056 -2 3 1166 729 70 0 0 chr12 76250828 76250928 -45006602 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 3 1166 570 286 45 7 chr12 76251983 76252138 -45005392 + RSINE1 SINE B4 3 163 -2 3 1166 480 111 0 0 chr12 76252145 76252217 -45005313 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 3 1166 24 53 0 0 chr12 76252257 76252295 -45005235 + AT_rich Low_complexity Low_complexity 1 38 0 3 1166 743 218 0 0 chr12 76252527 76252660 -45004870 + B1_Mus2 SINE Alu 3 135 -12 3 1166 363 89 0 0 chr12 76252662 76252718 -45004812 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1166 571 311 48 132 chr12 76252829 76253036 -45004494 + B4A SINE B4 2 221 -71 3 1166 663 48 0 0 chr12 76253036 76253119 -45004411 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 3 1166 571 311 48 132 chr12 76253119 76253160 -45004370 + B4A SINE B4 222 225 -67 3 1166 644 0 0 13 chr12 76253160 76253237 -45004293 + (GGGA)n Simple_repeat Simple_repeat 4 79 0 3 1166 571 311 48 132 chr12 76253237 76253298 -45004232 + B4A SINE B4 226 286 -6 3 1166 220 169 15 44 chr12 76253349 76253417 -45004113 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1166 22 0 0 0 chr12 76253781 76253803 -45003727 + AT_rich Low_complexity Low_complexity 1 22 0 3 1166 294 29 0 0 chr12 76254191 76254226 -45003304 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1166 30 27 0 0 chr12 76256017 76256054 -45001476 + AT_rich Low_complexity Low_complexity 1 37 0 3 1166 497 318 67 80 chr12 76256549 76256865 -45000665 + L1M5 LINE L1 4976 5287 -859 3 1166 269 247 65 0 chr12 76257090 76257183 -45000347 + L1M5 LINE L1 5585 5683 -481 3 1166 665 225 62 0 chr12 76257586 76257764 -44999766 + Lx4B LINE L1 6865 7053 -5 3 1166 4217 63 11 6 chr12 76257923 76258469 -44999061 + L1Md_F2 LINE L1 6024 6572 -10 3 1166 1018 248 64 75 chr12 76259208 76259727 -44997803 + L1MA8 LINE L1 5776 6287 -4 3 1166 656 142 0 16 chr12 76260464 76260586 -44996944 + CT-rich Low_complexity Low_complexity 2 121 0 3 1166 234 105 0 0 chr12 76261957 76261995 -44995535 + (CAG)n Simple_repeat Simple_repeat 3 40 0 3 1166 404 264 29 18 chr12 76262510 76262680 -44994850 + L1MA6 LINE L1 6089 6273 -27 3 1166 243 348 46 80 chr12 76262744 76262919 -44994611 - MER5B DNA MER1_type -7 171 3 4 1166 576 0 0 0 chr12 76263044 76263108 -44994422 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 4 1166 253 255 117 0 chr12 76263180 76263274 -44994256 + MER5A1 DNA MER1_type 27 131 -35 4 1166 472 320 71 43 chr12 76264111 76264392 -44993138 + B4 SINE B4 4 292 0 4 1166 182 171 24 0 chr12 76264404 76264445 -44993085 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1166 434 287 66 0 chr12 76264849 76264971 -44992559 + B4 SINE B4 1 130 -162 4 1166 294 330 35 18 chr12 76265185 76265299 -44992231 + L2 LINE L2 2624 2739 -680 4 1166 387 0 0 0 chr12 76266730 76266773 -44990757 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1166 666 282 77 14 chr12 76266773 76266982 -44990548 - B4A SINE B4 -64 228 7 4 1166 231 239 0 0 chr12 76267448 76267515 -44990015 + GA-rich Low_complexity Low_complexity 3 69 0 4 1166 1782 208 38 16 chr12 76267519 76267890 -44989640 - MTD LTR MaLR 0 419 41 4 1166 258 32 0 0 chr12 76267906 76267937 -44989593 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1166 513 204 23 0 chr12 76267987 76268075 -44989455 + URR1A DNA MER1_type 3 92 -134 4 1166 749 229 140 0 chr12 76268083 76268240 -44989290 - B3 SINE B2 -37 179 1 4 1166 975 103 7 7 chr12 76268240 76268385 -44989145 + URR1A DNA MER1_type 79 223 -3 4 1166 183 283 0 0 chr12 76270093 76270139 -44987391 + L2b LINE L2 3330 3375 0 4 1166 21 57 0 0 chr12 76271941 76271976 -44985554 + AT_rich Low_complexity Low_complexity 1 35 0 4 1166 280 284 0 59 chr12 76272477 76272664 -44984866 + G-rich Low_complexity Low_complexity 1 176 0 4 1166 334 277 73 0 chr12 76273878 76274041 -44983489 + L1MA5 LINE L1 6090 6275 -25 4 1166 605 105 11 0 chr12 76274561 76274656 -44982874 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 1166 295 256 0 0 chr12 76274657 76274739 -44982791 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1166 219 281 0 73 chr12 76274701 76274851 -44982679 + (TCTG)n Simple_repeat Simple_repeat 4 142 0 4 1166 262 325 0 0 chr12 76277547 76277630 -44979900 + GA-rich Low_complexity Low_complexity 1 83 0 4 1166 330 344 32 0 chr12 76278979 76279104 -44978426 + MER5A DNA MER1_type 22 150 -39 4 1166 231 61 0 0 chr12 76279437 76279470 -44978060 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 4 1166 450 114 0 0 chr12 76279484 76279554 -44977976 + (CCTA)n Simple_repeat Simple_repeat 2 71 0 4 1166 212 191 24 0 chr12 76280663 76280705 -44976825 + (CAG)n Simple_repeat Simple_repeat 3 45 0 4 1166 189 0 0 0 chr12 76281301 76281322 -44976208 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1166 1001 196 100 20 chr12 76281428 76281678 -44975852 - MTE2b LTR MaLR -24 355 86 4 1166 317 342 20 33 chr12 76281737 76281888 -44975642 + MLT1I LTR MaLR 68 216 -195 4 1166 458 305 18 18 chr12 76282048 76282218 -44975312 + MER5B DNA MER1_type 1 170 -8 4 1167 495 0 0 0 chr12 76284319 76284374 -44973156 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1167 187 286 47 16 chr12 76285155 76285219 -44972311 - MIRb SINE MIR -27 241 176 4 1167 209 367 62 8 chr12 76285282 76285411 -44972119 - MIR SINE MIR -112 150 15 4 1167 274 233 110 0 chr12 76285574 76285647 -44971883 + PB1D7 SINE Alu 1 81 -39 4 1167 721 307 78 20 chr12 76285794 76286193 -44971337 + MER63C DNA AcHobo 509 930 0 4 1167 645 98 9 18 chr12 76286299 76286413 -44971117 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 4 1167 1747 229 51 43 chr12 76286828 76287253 -44970277 + Lx9 LINE L1 7006 7434 -210 4 1167 192 77 0 0 chr12 76287253 76287279 -44970251 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1167 1747 229 51 43 chr12 76287279 76287323 -44970207 + Lx9 LINE L1 7435 7478 -166 4 1167 858 161 37 6 chr12 76287451 76287614 -44969916 + B2_Mm2 SINE B2 2 169 -26 4 1167 450 53 0 0 chr12 76287636 76287693 -44969837 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1167 541 266 28 14 chr12 76288770 76288911 -44968619 + RSINE1 SINE B4 3 145 -20 4 1167 387 0 0 0 chr12 76288912 76288955 -44968575 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1167 185 384 17 43 chr12 76289467 76289584 -44967946 - L2 LINE L2 -869 2550 2437 4 1167 295 279 31 19 chr12 76290079 76290240 -44967290 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 4 1167 315 0 0 0 chr12 76290241 76290276 -44967254 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 4 1167 442 278 41 64 chr12 76290615 76290834 -44966696 - RLTR42-int LTR ERVK -4139 1383 1170 4 1167 356 301 45 8 chr12 76291381 76291515 -44966015 - MLT1B LTR MaLR -6 384 246 4 1167 243 204 0 0 chr12 76291515 76291569 -44965961 + CT-rich Low_complexity Low_complexity 3 56 0 4 1167 272 325 16 41 chr12 76291583 76291705 -44965825 - MLT1B LTR MaLR -136 254 136 4 1167 1144 202 7 10 chr12 76291708 76291956 -44965574 + MTD LTR MaLR 160 419 0 4 1167 387 0 0 0 chr12 76292299 76292342 -44965188 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1167 486 136 0 0 chr12 76292345 76292426 -44965104 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 1167 919 308 99 21 chr12 76292440 76292812 -44964718 - Lx8 LINE L1 -195 7278 6878 4 1167 33887 89 21 2 chr12 76292849 76298625 -44958905 + L1Md_F2 LINE L1 366 6256 -326 4 1167 514 51 25 12 chr12 76298625 76298705 -44958825 + L1Md_F2 LINE L1 6496 6576 -6 4 1167 1820 286 10 49 chr12 76298705 76299319 -44958211 - Lx8 LINE L1 -624 6849 6260 4 1167 2086 139 9 99 chr12 76300783 76301239 -44956291 - BGLII_Mus LTR ERVK -7 415 1 4 1167 830 251 0 40 chr12 76301244 76301443 -44956087 + B4A SINE B4 102 292 0 4 1167 852 39 0 0 chr12 76301452 76301556 -44955974 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 4 1167 331 364 58 19 chr12 76301798 76301952 -44955578 - MLT1G1 LTR MaLR 0 579 420 4 1167 438 292 47 14 chr12 76302147 76302362 -44955168 + L1MA7 LINE L1 6063 6284 -7 4 1167 340 364 44 0 chr12 76303462 76303668 -44953862 + L1M5 LINE L1 3728 3942 -2204 4 1167 447 233 163 20 chr12 76303710 76303863 -44953667 - Lx5 LINE L1 -3 7047 6873 4 1167 240 207 17 17 chr12 76304320 76304379 -44953151 - ORR1D1 LTR MaLR -315 59 1 4 1167 296 318 112 19 chr12 76304455 76305112 -44952418 + L1M5 LINE L1 4297 5034 -1112 4 1167 569 315 16 11 chr12 76305226 76305412 -44952118 + B3A SINE B2 5 191 -7 4 1167 186 241 23 11 chr12 76305412 76305500 -44952030 + (ATG)n Simple_repeat Simple_repeat 1 89 0 4 1167 307 297 62 42 chr12 76305608 76305752 -44951778 + L1M5 LINE L1 5148 5294 -852 4 1167 240 275 0 36 chr12 76305794 76305877 -44951653 + L1MB8 LINE L1 2926 3005 -3135 4 1167 5767 36 7 0 chr12 76305912 76306823 -44950707 + L1Md_F2 LINE L1 5337 6253 -329 4 1167 810 76 8 8 chr12 76306823 76306956 -44950574 + L1Md_F3 LINE L1 6451 6583 -1 4 1167 1894 269 91 31 chr12 76306971 76307774 -44949756 + L1MB8 LINE L1 3052 3902 -2238 4 1167 8124 80 14 5 chr12 76307765 76309257 -44948273 + L1_Mus1 LINE L1 4770 6290 -277 4 1167 3601 18 0 0 chr12 76309257 76309653 -44947877 + MTA_Mm LTR MaLR 1 396 0 4 1167 7584 54 31 10 chr12 76309653 76309938 -44947592 + L1_Mus1 LINE L1 6291 6567 0 4 1167 1412 310 42 26 chr12 76309945 76310320 -44947210 + L1MB8 LINE L1 3876 4245 -1895 4 1167 545 42 0 14 chr12 76310320 76310393 -44947137 + (GGGA)n Simple_repeat Simple_repeat 3 74 0 4 1167 1412 327 77 25 chr12 76310393 76311061 -44946469 + L1MB8 LINE L1 4245 5017 -1129 4 1167 908 289 39 31 chr12 76311271 76311557 -44945973 + B4 SINE B4 4 291 -1 4 1167 1119 63 21 0 chr12 76311648 76311791 -44945739 + B1_Mus1 SINE Alu 2 147 -1 4 1167 266 289 41 16 chr12 76311791 76311914 -44945616 + L1MB8 LINE L1 5179 5304 -842 4 1167 335 263 49 41 chr12 76311986 76312109 -44945421 + L1MB8 LINE L1 5547 5670 -514 4 1167 444 37 0 0 chr12 76312110 76312164 -44945366 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1167 411 335 81 14 chr12 76312235 76312471 -44945059 - MER57E2 LTR ERV1 -1 435 147 4 1167 618 287 111 15 chr12 76312501 76312905 -44944625 + L1MB8 LINE L1 5737 6184 0 4 1167 285 345 63 23 chr12 76313811 76313986 -44943544 + MLT1M LTR MaLR 132 313 -359 4 1167 266 295 137 0 chr12 76314061 76314156 -44943374 + B4A SINE B4 181 288 -4 4 1167 213 39 0 0 chr12 76314200 76314226 -44943304 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1167 352 363 47 71 chr12 76314732 76314987 -44942543 + MER21B LTR ERV1 604 852 -11 4 1167 215 31 31 0 chr12 76315119 76315151 -44942379 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 4 1167 190 425 8 8 chr12 76315171 76315299 -44942231 + MIRb SINE MIR 131 258 -10 4 1167 337 219 0 14 chr12 76316601 76316675 -44940855 + PB1D10 SINE Alu 41 113 -4 4 1167 221 271 92 20 chr12 76316915 76317013 -44940517 - MIRm SINE MIR -84 192 88 4 1167 570 335 78 5 chr12 76317190 76317382 -44940148 + B4 SINE B4 3 208 -84 4 1167 818 29 19 0 chr12 76317396 76317500 -44940030 + (GAAA)n Simple_repeat Simple_repeat 2 107 0 4 1167 512 286 43 55 chr12 76317509 76317672 -44939858 + RSINE1 SINE B4 3 163 -2 4 1167 930 8 25 0 chr12 76317708 76317827 -44939703 + (TC)n Simple_repeat Simple_repeat 1 122 0 4 1167 183 42 0 0 chr12 76317955 76317979 -44939551 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1167 456 267 0 19 chr12 76319979 76320086 -44937444 + PB1D10 SINE Alu 6 110 -7 4 1167 1930 162 18 42 chr12 76320096 76320496 -44937034 - RMER10B LTR ERVL -8 390 1 4 1167 22 35 0 0 chr12 76320718 76320747 -44936783 + AT_rich Low_complexity Low_complexity 1 29 0 4 1167 3545 219 46 61 chr12 76321849 76323252 -44934278 + RMER1B Other Other 6 1062 -4 4 1167 1173 289 124 36 chr12 76323368 76324485 -44933045 - L1MA4 LINE L1 -355 5945 4697 4 1167 442 250 0 0 chr12 76324543 76324635 -44932895 - PB1D10 SINE Alu -24 93 2 4 1167 584 265 82 6 chr12 76324648 76324830 -44932700 - B3A SINE B2 0 198 3 4 1167 391 328 15 15 chr12 76324832 76325030 -44932500 - L1_Mur1 LINE L1 -1203 4683 4486 4 1167 289 355 85 23 chr12 76325281 76325457 -44932073 + ORR1E LTR MaLR 2 188 -171 4 1167 31582 91 16 4 chr12 76325592 76330764 -44926766 + L1Md_F2 LINE L1 347 5585 -298 4 1167 8090 52 3 4 chr12 76330765 76331760 -44925770 + L1Md_F2 LINE L1 5587 6580 -2 4 1167 306 278 22 0 chr12 76332204 76332294 -44925236 - B4A SINE B4 -199 93 2 4 1167 651 219 0 0 chr12 76332316 76332439 -44925091 - RSINE1 SINE B4 -41 124 2 4 1167 288 0 0 0 chr12 76334168 76334200 -44923330 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 4 1167 2188 153 8 24 chr12 76335713 76336087 -44921443 - RMER1B Other Other 0 1066 699 4 1167 7266 197 54 52 chr12 76336071 76337717 -44919813 - Lx7 LINE L1 -445 7251 5603 4 1167 356 182 26 13 chr12 76337715 76337793 -44919737 - Lx7 LINE L1 -1087 4793 4715 4 1167 206 270 27 13 chr12 76337903 76337978 -44919552 + L2 LINE L2 2341 2416 -1003 5 1167 815 180 214 0 chr12 76338221 76338399 -44919131 - B3 SINE B2 0 216 1 5 1167 850 133 14 20 chr12 76338401 76338412 -44919118 - B1_Mur4 SINE Alu 0 150 142 5 1167 540 73 0 0 chr12 76338412 76338494 -44919036 + (GGTTG)n Simple_repeat Simple_repeat 2 83 0 5 1167 850 133 14 20 chr12 76338494 76338628 -44918902 - B1_Mur4 SINE Alu -9 141 6 5 1167 232 373 75 21 chr12 76338876 76339117 -44918413 + L2 LINE L2 2689 2942 -477 5 1167 425 294 150 9 chr12 76339297 76339510 -44918020 - MLT1L LTR MaLR -3 607 365 5 1167 391 190 10 29 chr12 76339865 76339968 -44917562 + (CACCAT)n Simple_repeat Simple_repeat 4 104 0 5 1167 369 0 0 0 chr12 76340104 76340145 -44917385 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1167 878 231 15 25 chr12 76340350 76340550 -44916980 + B3A SINE B2 1 198 0 5 1167 489 250 8 25 chr12 76340574 76340693 -44916837 + PB1D10 SINE Alu 1 117 0 5 1167 322 217 0 14 chr12 76341394 76341464 -44916066 - Charlie12 DNA MER1_type -2 2871 2803 5 1167 373 275 71 64 chr12 76341535 76341675 -44915855 + RMER30 DNA MER1_type 61 201 -1 5 1167 513 256 141 12 chr12 76341688 76341929 -44915601 - MER63D DNA AcHobo -656 405 134 5 1167 1340 231 77 31 chr12 76341953 76342306 -44915224 - ORR1D2 LTR MaLR -1 369 1 5 1167 22 35 0 0 chr12 76342321 76342350 -44915180 + AT_rich Low_complexity Low_complexity 1 29 0 5 1167 280 229 16 0 chr12 76342430 76342491 -44915039 + L1M1 LINE L1 5525 5586 -717 5 1167 186 43 0 0 chr12 76342568 76342591 -44914939 + (ATG)n Simple_repeat Simple_repeat 2 24 0 5 1167 554 106 50 14 chr12 76342615 76342838 -44914692 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 5 1167 1269 283 82 13 chr12 76342917 76343368 -44914162 - L1MA4 LINE L1 -379 5921 5440 5 1167 822 202 18 0 chr12 76343382 76343545 -44913985 - RMER1C Other Other -137 1205 1040 5 1167 36617 62 2 1 chr12 76343542 76349452 -44908078 - L1Md_F2 LINE L1 -12 6573 563 5 1167 303 133 0 0 chr12 76349445 76349490 -44908040 - L1Md_F2 LINE L1 -6282 337 293 5 1167 1224 170 54 21 chr12 76349491 76349731 -44907799 - RMER1C Other Other -287 1055 808 5 1167 741 238 184 4 chr12 76349943 76350221 -44907309 - L1MA4 LINE L1 -922 5221 4894 5 1167 565 301 28 0 chr12 76350441 76350584 -44906946 + RSINE1 SINE B4 3 149 -16 5 1167 414 0 0 0 chr12 76350586 76350632 -44906898 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1167 1762 138 27 45 chr12 76351338 76351671 -44905859 + ORR1A2 LTR MaLR 1 327 0 5 1167 39 0 0 0 chr12 76351802 76351841 -44905689 + AT_rich Low_complexity Low_complexity 1 39 0 5 1167 258 298 36 0 chr12 76352098 76352182 -44905348 - MLT1B LTR MaLR -115 480 394 5 1167 509 309 49 80 chr12 76353495 76353783 -44903747 - MLT1B LTR MaLR -44 346 68 5 1167 586 183 8 8 chr12 76354244 76354376 -44903154 - Lx9 LINE L1 0 7644 7513 5 1167 449 248 118 15 chr12 76354379 76354399 -44903131 - B1F1 SINE Alu 0 149 129 5 1167 414 0 0 0 chr12 76354399 76354445 -44903085 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1167 449 248 118 15 chr12 76354445 76354559 -44902971 - B1F1 SINE Alu -21 128 2 5 1167 327 261 111 58 chr12 76355324 76355638 -44901892 + ORR1E LTR MaLR 24 379 0 5 1167 379 308 57 155 chr12 76355769 76356227 -44901303 + MER77 LTR ERVL 10 422 -185 5 1167 701 261 57 0 chr12 76356813 76356970 -44900560 + B3 SINE B2 1 166 -50 5 1167 22 35 0 0 chr12 76357800 76357829 -44899701 + AT_rich Low_complexity Low_complexity 1 29 0 5 1167 220 283 0 0 chr12 76357950 76358003 -44899527 + B4 SINE B4 2 54 -238 5 1167 222 150 0 0 chr12 76358031 76358071 -44899459 + (CATA)n Simple_repeat Simple_repeat 3 42 0 5 1167 480 328 29 59 chr12 76358110 76358219 -44899311 + B4 SINE B4 94 208 -84 5 1167 2367 113 110 3 chr12 76358219 76358575 -44898955 - ORR1B1 LTR MaLR 0 394 1 5 1167 480 328 29 59 chr12 76358575 76358650 -44898880 + B4 SINE B4 209 273 -19 5 1167 342 0 0 0 chr12 76358650 76358688 -44898842 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1167 480 328 29 59 chr12 76358688 76358706 -44898824 + B4 SINE B4 274 291 -1 5 1167 576 42 0 0 chr12 76358706 76358777 -44898753 + (GA)n Simple_repeat Simple_repeat 1 71 0 5 1167 232 236 55 0 chr12 76360072 76360127 -44897403 - Lx2B LINE L1 -452 6548 6491 5 1167 244 247 54 0 chr12 76360383 76360476 -44897054 + L1MB7 LINE L1 4744 4841 -1305 5 1167 596 186 0 146 chr12 76360476 76360627 -44896903 - B1_Mur2 SINE Alu -20 129 1 5 1167 735 291 92 19 chr12 76360639 76361105 -44896425 + L1MB7 LINE L1 4880 5409 -775 5 1167 204 191 48 0 chr12 76361597 76361639 -44895891 + GA-rich Low_complexity Low_complexity 4 47 0 5 1167 902 288 114 43 chr12 76361641 76362175 -44895355 + L1MB7 LINE L1 5481 6052 -132 5 1167 186 43 0 0 chr12 76363127 76363150 -44894380 + (CAGG)n Simple_repeat Simple_repeat 2 24 0 5 1167 256 256 27 15 chr12 76363509 76363631 -44893899 - MLT1A1 LTR MaLR -13 395 225 5 1167 1401 82 11 0 chr12 76363801 76363985 -44893545 + B2_Mm2 SINE B2 1 186 -9 5 1167 1105 235 166 9 chr12 76364571 76364848 -44892682 - MTE2b LTR MaLR -2 377 52 5 1167 1526 146 302 0 chr12 76364848 76365149 -44892381 - ORR1B1 LTR MaLR -2 392 1 5 1167 1105 235 166 9 chr12 76365149 76365197 -44892333 - MTE2b LTR MaLR -328 51 1 5 1167 936 263 120 44 chr12 76365291 76365633 -44891897 + MER82 DNA MER2_type 96 463 -190 5 1167 375 331 29 40 chr12 76366694 76366867 -44890663 - MER90 LTR ERV1 -377 198 28 5 1167 46 62 0 0 chr12 76367063 76367144 -44890386 + AT_rich Low_complexity Low_complexity 1 81 0 5 1167 980 17 8 0 chr12 76367602 76367720 -44889810 + (GAA)n Simple_repeat Simple_repeat 2 120 0 5 1167 986 260 72 0 chr12 76367880 76368145 -44889385 + B4A SINE B4 5 288 -4 5 1167 567 0 0 0 chr12 76368184 76368247 -44889283 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1167 291 114 0 0 chr12 76368302 76368346 -44889184 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 5 1167 1004 213 130 36 chr12 76368491 76368798 -44888732 - Lx8 LINE L1 -2 7471 7136 5 1167 275 122 20 0 chr12 76369659 76369708 -44887822 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 5 1167 731 282 10 19 chr12 76370506 76370712 -44886818 - ID_B1 SINE B4 -20 204 1 5 1167 1047 109 0 17 chr12 76370784 76370961 -44886569 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 5 1167 394 157 12 12 chr12 76370965 76371049 -44886481 + GA-rich Low_complexity Low_complexity 3 86 0 5 1167 330 44 118 0 chr12 76371547 76371615 -44885915 + (GTTTG)n Simple_repeat Simple_repeat 4 79 0 5 1167 1234 54 0 0 chr12 76371615 76371763 -44885767 - B1_Mus1 SINE Alu 0 148 1 5 1167 216 0 0 0 chr12 76371788 76371812 -44885718 + (TTG)n Simple_repeat Simple_repeat 1 24 0 5 1167 1514 207 60 70 chr12 76372009 76372192 -44885338 + ORR1C2 LTR MaLR 1 179 -205 5 1167 480 18 0 0 chr12 76372192 76372249 -44885281 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1167 1514 207 60 70 chr12 76372249 76372449 -44885081 + ORR1C2 LTR MaLR 180 379 -5 5 1167 2040 76 13 44 chr12 76374416 76374732 -44882798 + ORR1A2 LTR MaLR 14 319 -8 5 1167 468 332 40 73 chr12 76374777 76374956 -44882574 - MER58B DNA MER1_type -31 310 134 5 1167 701 304 109 12 chr12 76374956 76375286 -44882244 - MLT1A0 LTR MaLR -2 363 2 5 1167 468 332 40 73 chr12 76375286 76375408 -44882122 - MER58B DNA MER1_type -208 133 19 5 1167 519 273 160 39 chr12 76375812 76376094 -44881436 + MLT1A0 LTR MaLR 9 324 -41 5 1167 471 261 8 17 chr12 76376094 76376211 -44881319 + PB1D10 SINE Alu 1 116 -1 5 1167 350 251 250 49 chr12 76376243 76376531 -44880999 - RLTR15 LTR ERVK -13 346 1 5 1167 677 61 20 0 chr12 76376728 76376826 -44880704 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 5 1167 284 305 88 93 chr12 76377244 76377453 -44880077 - B4A SINE B4 -77 215 2 5 1167 582 294 0 69 chr12 76377791 76377966 -44879564 + RSINE1 SINE B4 3 165 0 5 1167 2619 129 61 54 chr12 76378153 76378613 -44878917 + RMER4A LTR ERVK 2 464 -2 5 1167 270 233 98 22 chr12 76378701 76378793 -44878737 - LTR16E1 LTR ERVL -1 537 439 5 1167 636 258 136 28 chr12 76379409 76379513 -44878017 - Lx8 LINE L1 -2 7471 7356 5 1167 351 0 0 0 chr12 76379513 76379552 -44877978 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 5 1167 636 258 136 28 chr12 76379552 76379698 -44877832 - Lx8 LINE L1 -118 7355 7194 5 1167 1021 239 0 9 chr12 76379700 76379920 -44877610 + Lx9 LINE L1 7241 7458 -186 5 1167 405 0 0 0 chr12 76379926 76379971 -44877559 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1167 302 184 51 76 chr12 76379972 76380090 -44877440 + Lx9 LINE L1 7522 7636 -8 5 1167 860 282 27 98 chr12 76380116 76380454 -44877076 + Lx7 LINE L1 6863 7176 -520 5 1167 1969 93 3 17 chr12 76380554 76380848 -44876682 - MTB LTR MaLR 0 400 111 5 1167 268 230 40 0 chr12 76380981 76381081 -44876449 - L2 LINE L2 -1252 2167 2064 5 1167 342 0 0 0 chr12 76382558 76382596 -44874934 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1167 271 252 171 0 chr12 76383223 76383346 -44874184 - MamRep4096 DNA hAT? -65 361 218 5 1167 405 295 64 20 chr12 76383426 76383630 -44873900 - RMER2 LTR ERV1 0 567 355 5 1167 225 280 87 39 chr12 76384165 76384269 -44873261 - MIRb SINE MIR -125 143 35 5 1167 431 0 68 45 chr12 76386146 76386234 -44871296 + (CAAAA)n Simple_repeat Simple_repeat 1 90 0 5 1167 928 132 14 7 chr12 76387766 76387911 -44869619 + B1_Mur4 SINE Alu 2 147 -3 5 1167 479 231 103 0 chr12 76388233 76388350 -44869180 + B4A SINE B4 106 234 -58 5 1167 320 270 156 71 chr12 76388486 76388697 -44868833 + B4A SINE B4 53 281 -11 5 1167 37 86 0 0 chr12 76388745 76388838 -44868692 + AT_rich Low_complexity Low_complexity 1 93 0 5 1167 459 0 0 0 chr12 76389241 76389292 -44868238 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1167 366 139 0 0 chr12 76389292 76389364 -44868166 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1167 242 227 13 0 chr12 76389390 76389465 -44868065 + CT-rich Low_complexity Low_complexity 2 77 0 5 1167 532 240 211 7 chr12 76390065 76390217 -44867313 + B3 SINE B2 2 183 -33 5 1167 333 0 0 0 chr12 76390217 76390254 -44867276 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1167 270 0 0 0 chr12 76390254 76390283 -44867247 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1167 425 242 112 78 chr12 76390283 76390308 -44867222 + B2_Mm2 SINE B2 163 185 -10 5 1167 323 228 0 0 chr12 76390464 76390521 -44867009 + RSINE1 SINE B4 83 139 -26 5 1167 483 18 0 0 chr12 76390551 76390607 -44866923 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1167 30 45 0 0 chr12 76390630 76390674 -44866856 + AT_rich Low_complexity Low_complexity 1 44 0 5 1167 231 217 50 0 chr12 76391098 76391158 -44866372 - tRNA-Thr-ACG_ tRNA tRNA -13 64 2 5 1167 2081 31 8 8 chr12 76391206 76391462 -44866068 + L1Md_F3 LINE L1 6326 6581 -3 6 1167 249 328 55 60 chr12 76392289 76392440 -44865090 + L1MC4 LINE L1 7296 7452 -590 6 1167 4522 148 121 20 chr12 76392440 76393258 -44864272 - RMER19B LTR ERVK 0 902 2 6 1167 249 328 55 60 chr12 76393258 76393307 -44864223 + L1MC4 LINE L1 7453 7495 -547 6 1167 436 291 62 132 chr12 76393401 76393475 -44864055 - L1M4 LINE L1 -2793 3350 3261 6 1167 501 17 0 0 chr12 76393475 76393533 -44863997 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1167 333 0 0 0 chr12 76393533 76393569 -44863961 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1167 502 282 49 90 chr12 76393569 76394024 -44863506 - L1M4 LINE L1 -2883 3260 2857 6 1167 604 279 133 35 chr12 76394203 76394486 -44863044 + B4A SINE B4 4 288 -4 6 1167 308 250 174 0 chr12 76394631 76394723 -44862807 + B1F SINE Alu 42 149 0 6 1167 272 262 46 9 chr12 76394754 76394862 -44862668 + L1MC4 LINE L1 7924 8035 -7 6 1167 259 304 63 27 chr12 76395691 76395851 -44861679 + MIR SINE MIR 13 183 -85 6 1167 1060 144 193 0 chr12 76396204 76396385 -44861145 + B3 SINE B2 1 216 0 6 1167 440 332 53 121 chr12 76396537 76396698 -44860832 - Charlie25 DNA MER1_type -259 2265 2118 6 1167 2631 124 47 12 chr12 76396698 76397105 -44860425 + MTC LTR MaLR 1 421 0 6 1167 440 332 53 121 chr12 76397105 76397570 -44859960 - Charlie25 DNA MER1_type -407 2117 1682 6 1167 273 281 118 7 chr12 76397916 76397943 -44859587 - L1MA6 LINE L1 -5 6295 6262 6 1167 315 0 0 0 chr12 76397943 76397978 -44859552 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1167 273 281 118 7 chr12 76397978 76398086 -44859444 - L1MA6 LINE L1 -39 6261 6146 6 1167 218 32 32 0 chr12 76398094 76398125 -44859405 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 6 1167 198 71 0 0 chr12 76398125 76398153 -44859377 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1167 420 299 0 59 chr12 76398189 76398342 -44859188 + B1F2 SINE Alu 1 144 -5 6 1167 378 240 73 45 chr12 76398480 76398646 -44858884 - MLT1A LTR MaLR -217 173 1 6 1167 190 315 166 37 chr12 76398791 76399140 -44858390 + L2b LINE L2 2471 2864 -555 6 1167 200 221 142 125 chr12 76399379 76399555 -44857975 + L2b LINE L2 3209 3387 0 6 1167 1448 184 157 48 chr12 76399588 76399723 -44857807 + ORR1D1 LTR MaLR 1 165 -209 6 1167 756 107 0 0 chr12 76399723 76399835 -44857695 + (TC)n Simple_repeat Simple_repeat 1 112 0 6 1167 1448 184 157 48 chr12 76399835 76400036 -44857494 + ORR1D1 LTR MaLR 166 374 0 6 1167 1310 199 109 39 chr12 76400266 76400634 -44856896 + MT2A LTR ERVL 1 483 -118 6 1167 416 72 14 0 chr12 76402329 76402398 -44855132 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1167 1008 280 41 9 chr12 76402402 76402719 -44854811 + MLT1A0 LTR MaLR 39 365 0 6 1167 870 240 89 48 chr12 76403760 76404053 -44853477 + RLTR20C LTR ERVK 1 305 -229 6 1167 651 296 83 23 chr12 76404472 76404738 -44852792 - B4A SINE B4 -8 284 3 6 1167 450 210 32 11 chr12 76404865 76404980 -44852550 - PB1D10 SINE Alu -1 116 3 6 1167 543 107 0 0 chr12 76405719 76405803 -44851727 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1167 231 239 0 0 chr12 76405851 76405939 -44851591 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 1167 348 163 0 0 chr12 76406060 76406146 -44851384 + (TG)n Simple_repeat Simple_repeat 2 87 0 6 1167 445 192 115 39 chr12 76406597 76406727 -44850803 - B1_Mur1 SINE Alu -9 140 1 6 1167 334 290 148 32 chr12 76407579 76407768 -44849762 + MLT1I LTR MaLR 8 218 -193 6 1167 267 272 27 20 chr12 76407832 76407982 -44849548 + G-rich Low_complexity Low_complexity 3 153 0 6 1167 694 208 11 6 chr12 76407962 76408136 -44849394 + GA-rich Low_complexity Low_complexity 3 177 0 6 1167 334 228 96 38 chr12 76412211 76412390 -44845140 + MIR SINE MIR 52 234 -28 6 1167 213 94 0 0 chr12 76413954 76413986 -44843544 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1167 382 114 29 0 chr12 76414027 76414097 -44843433 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1167 214 286 70 23 chr12 76414146 76414232 -44843298 + L2a LINE L2 3335 3424 -2 6 1168 245 227 180 14 chr12 76415488 76415570 -44841960 + ID4 SINE ID 1 92 -60 6 1168 302 264 45 11 chr12 76415802 76415890 -44841640 - MER21B LTR ERV1 -675 188 98 6 1168 23 33 0 0 chr12 76416432 76416462 -44841068 + AT_rich Low_complexity Low_complexity 1 30 0 6 1168 451 362 113 3 chr12 76418141 76418432 -44839098 - MLT1J2 LTR MaLR -121 327 5 6 1168 255 340 69 51 chr12 76418497 76418714 -44838816 - MLT1J2-int LTR MaLR -83 1304 1084 6 1168 2988 42 6 0 chr12 76418832 76419189 -44838341 - L1Md_T LINE L1 0 6582 6224 6 1168 543 270 0 0 chr12 76419650 76419765 -44837765 - RSINE1 SINE B4 -13 152 38 6 1168 333 0 0 0 chr12 76419884 76419921 -44837609 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1168 429 20 0 0 chr12 76419921 76419970 -44837560 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1168 289 342 0 0 chr12 76420020 76420093 -44837437 - B4 SINE B4 0 292 220 6 1168 353 274 21 0 chr12 76420115 76420210 -44837320 - B4A SINE B4 -193 99 3 6 1168 809 265 117 26 chr12 76420615 76420632 -44836898 - B4A SINE B4 -4 288 272 6 1168 366 23 0 0 chr12 76420632 76420675 -44836855 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1168 809 265 117 26 chr12 76420675 76420921 -44836609 - B4A SINE B4 -21 271 3 6 1168 304 337 31 10 chr12 76422035 76422131 -44835399 - MIRb SINE MIR -113 155 58 6 1168 237 163 0 0 chr12 76423499 76423548 -44833982 + (CAT)n Simple_repeat Simple_repeat 2 50 0 6 1168 799 194 158 11 chr12 76423548 76423725 -44833805 - B3 SINE B2 -13 203 1 6 1168 1436 233 105 0 chr12 76424142 76424485 -44833045 + MTE2b LTR MaLR 1 379 0 6 1168 2228 166 122 44 chr12 76424668 76425166 -44832364 - RMER15 LTR ERVL 0 575 39 6 1168 1602 238 100 77 chr12 76425170 76425662 -44831868 - RMER15-int LTR ERVL -17 4982 4480 6 1168 946 246 40 61 chr12 76425662 76425939 -44831591 - RMER15-int LTR ERVL -3029 1970 1700 6 1168 414 0 0 0 chr12 76426286 76426332 -44831198 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1168 1400 161 157 9 chr12 76426338 76426493 -44831037 - RMER17C LTR ERVK -29 381 182 6 1168 867 46 0 0 chr12 76426493 76426601 -44830929 + (GGAGA)n Simple_repeat Simple_repeat 2 109 0 6 1168 1400 161 157 9 chr12 76426601 76426777 -44830753 - RMER17C LTR ERVK -229 181 2 6 1168 186 43 0 0 chr12 76426996 76427019 -44830511 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 6 1168 212 259 0 18 chr12 76427183 76427238 -44830292 - B1F SINE Alu -81 68 15 6 1168 294 182 83 83 chr12 76427256 76427328 -44830202 - PB1D10 SINE Alu -39 78 7 6 1168 657 38 0 0 chr12 76427405 76427485 -44830045 + (TC)n Simple_repeat Simple_repeat 2 81 0 6 1168 578 168 168 0 chr12 76427510 76427635 -44829895 - B1_Mur4 SINE Alu -3 147 2 6 1168 235 196 0 0 chr12 76428168 76428214 -44829316 + B1F SINE Alu 102 147 -2 6 1168 378 324 0 38 chr12 76428948 76429054 -44828476 + PB1 SINE Alu 1 102 -25 6 1168 230 329 12 0 chr12 76430980 76431062 -44826468 + ID4 SINE ID 1 83 0 6 1168 4260 32 6 10 chr12 76431103 76431604 -44825926 - L1Md_F3 LINE L1 -3 6581 6083 6 1168 709 259 175 31 chr12 76431624 76431915 -44825615 - Tigger7 DNA MER2_type -6 2485 2153 6 1168 1634 218 107 87 chr12 76432005 76432604 -44824926 - RMER19C LTR ERVK 0 611 1 6 1168 620 234 27 20 chr12 76432766 76432914 -44824616 + B1F1 SINE Alu 1 149 0 6 1168 519 82 0 0 chr12 76432920 76432993 -44824537 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 6 1168 551 295 19 0 chr12 76433334 76433490 -44824040 + RSINE1 SINE B4 3 161 -4 6 1168 265 311 73 27 chr12 76433594 76433924 -44823606 + L1M7 LINE L1 779 1123 -5095 6 1168 26 50 0 0 chr12 76434411 76434451 -44823079 + AT_rich Low_complexity Low_complexity 1 40 0 6 1168 189 0 0 0 chr12 76434890 76434911 -44822619 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1168 499 252 95 44 chr12 76435269 76435564 -44821966 - RLTR15 LTR ERVK -32 327 18 6 1168 1221 174 5 5 chr12 76435766 76435986 -44821544 + URR1A DNA MER1_type 7 226 0 6 1168 295 231 135 71 chr12 76436026 76436152 -44821378 + MLT1H2 LTR MaLR 348 481 -8 6 1168 1040 311 86 58 chr12 76437342 76437843 -44819687 - MLT1E2 LTR MaLR -88 539 25 6 1168 906 183 0 0 chr12 76438162 76438555 -44818975 + (CA)n Simple_repeat Simple_repeat 1 393 0 6 1168 694 316 56 16 chr12 76438868 76439119 -44818411 + B4A SINE B4 9 269 -23 6 1168 384 40 0 0 chr12 76439119 76439169 -44818361 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1168 1226 61 0 0 chr12 76439231 76439378 -44818152 + B1_Mus1 SINE Alu 1 147 -1 6 1168 405 0 0 0 chr12 76439378 76439423 -44818107 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1168 2458 168 71 26 chr12 76439734 76440266 -44817264 - RMER19B LTR ERVK 0 902 347 6 1168 1137 145 0 186 chr12 76440277 76440556 -44816974 - RMER19B LTR ERVK -675 227 1 6 1168 185 342 32 71 chr12 76440670 76440796 -44816734 + MIR SINE MIR 23 143 -65 6 1168 564 235 125 16 chr12 76441611 76441922 -44815608 - L1_Mur1 LINE L1 -480 5406 5062 6 1168 1050 293 63 4 chr12 76441955 76442226 -44815304 - B4A SINE B4 -5 287 1 6 1168 492 230 136 6 chr12 76442936 76443098 -44814432 + ID_B1 SINE B4 36 218 -6 6 1168 270 323 0 10 chr12 76443191 76443291 -44814239 + PB1D10 SINE Alu 1 99 -18 6 1168 257 269 0 0 chr12 76443314 76443381 -44814149 + ID4 SINE ID 1 67 -16 6 1168 273 29 0 0 chr12 76444032 76444066 -44813464 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1168 495 0 0 0 chr12 76444375 76444430 -44813100 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1168 204 397 27 0 chr12 76444541 76444687 -44812843 + (CATG)n Simple_repeat Simple_repeat 3 152 0 6 1168 183 234 0 0 chr12 76444749 76444798 -44812732 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1168 479 82 24 0 chr12 76444798 76444883 -44812647 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 6 1168 183 234 0 0 chr12 76444883 76444897 -44812633 + (CA)n Simple_repeat Simple_repeat 2 15 0 6 1168 567 40 0 0 chr12 76444935 76445009 -44812521 + L1_Mus2 LINE L1 6493 6566 0 6 1168 405 133 35 17 chr12 76445646 76445761 -44811769 + (CAGA)n Simple_repeat Simple_repeat 2 118 0 6 1168 333 123 0 0 chr12 76446752 76446817 -44810713 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1168 360 0 0 0 chr12 76447992 76448032 -44809498 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 6 1168 423 252 0 0 chr12 76448057 76448156 -44809374 + PB1D10 SINE Alu 19 117 0 6 1168 399 192 0 0 chr12 76449674 76449747 -44807783 + B1_Mus2 SINE Alu 10 82 -65 7 1168 2957 154 79 48 chr12 76449762 76450676 -44806854 - RLTR13D1 LTR ERVK 0 893 2 7 1168 2760 179 18 52 chr12 76450994 76451566 -44805964 - Lx5 LINE L1 0 7050 6499 7 1168 383 237 13 0 chr12 76452307 76452383 -44805147 + B4 SINE B4 11 87 -205 7 1168 242 193 0 17 chr12 76452383 76452441 -44805089 + GA-rich Low_complexity Low_complexity 2 58 0 7 1168 873 206 65 0 chr12 76452467 76452651 -44804879 + B4A SINE B4 97 292 0 7 1168 276 233 0 0 chr12 76452651 76452711 -44804819 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1168 212 0 36 0 chr12 76453179 76453207 -44804323 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1168 200 322 10 79 chr12 76453464 76453565 -44803965 + MIRb SINE MIR 27 120 -148 7 1168 225 0 0 0 chr12 76455548 76455573 -44801957 + (CCA)n Simple_repeat Simple_repeat 2 26 0 7 1168 517 311 91 36 chr12 76456270 76456544 -44800986 - B4A SINE B4 -1 291 3 7 1168 266 257 0 14 chr12 76457167 76457238 -44800292 - MER5B DNA MER1_type 0 178 109 7 1168 194 198 20 0 chr12 76457420 76457521 -44800009 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 7 1168 196 241 184 0 chr12 76457647 76457734 -44799796 + L2c LINE L2 2969 3071 -316 7 1168 327 65 0 0 chr12 76458528 76458574 -44798956 + (TAAAA)n Simple_repeat Simple_repeat 4 49 0 7 1168 553 299 13 0 chr12 76458587 76458741 -44798789 + RSINE1 SINE B4 4 159 -6 7 1168 538 234 25 49 chr12 76459462 76459624 -44797906 - MLT1D LTR MaLR -266 239 82 7 1168 189 125 54 0 chr12 76462837 76462893 -44794637 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1168 211 200 0 0 chr12 76464373 76464418 -44793112 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1168 353 271 1 12 chr12 76464479 76464572 -44792958 - PB1D10 SINE Alu -54 93 1 7 1168 978 192 0 101 chr12 76464735 76464973 -44792557 + B3 SINE B2 1 214 -2 7 1168 375 277 137 8 chr12 76464996 76465127 -44792403 + B3A SINE B2 27 174 -24 7 1168 794 259 77 14 chr12 76465838 76466046 -44791484 + B4 SINE B4 3 223 -69 7 1168 1030 79 0 0 chr12 76466083 76466223 -44791307 + B1_Mus1 SINE Alu 9 148 0 7 1168 183 139 0 0 chr12 76466225 76466261 -44791269 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1168 396 0 0 0 chr12 76467492 76467536 -44789994 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1168 436 155 0 35 chr12 76468075 76468162 -44789368 - PB1D10 SINE Alu 0 117 34 7 1168 327 263 26 0 chr12 76469466 76469542 -44787988 - RSINE1 SINE B4 -19 146 69 7 1168 279 236 0 0 chr12 76470028 76470100 -44787430 + (CCA)n Simple_repeat Simple_repeat 1 72 0 7 1168 211 191 71 0 chr12 76470242 76470284 -44787246 + L2c LINE L2 3117 3161 -226 7 1168 23813 62 1 1 chr12 76470885 76473898 -44783632 + L1_Mm LINE L1 2572 5586 -297 7 1168 7395 65 39 0 chr12 76473898 76474845 -44782685 + L1Md_F2 LINE L1 5587 6570 -12 7 1168 204 40 0 0 chr12 76475789 76475814 -44781716 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1168 324 0 0 0 chr12 76475814 76475849 -44781681 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1168 472 207 0 0 chr12 76475856 76475938 -44781592 - B4A SINE B4 -210 82 1 7 1168 274 175 12 12 chr12 76476556 76476637 -44780893 + (TA)n Simple_repeat Simple_repeat 2 82 0 7 1168 324 0 0 0 chr12 76476694 76476730 -44780800 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1168 189 0 0 0 chr12 76477731 76477752 -44779778 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1168 592 249 81 6 chr12 76478725 76478899 -44778631 - MER5A DNA MER1_type 0 189 3 7 1168 434 269 0 0 chr12 76478984 76479088 -44778442 + ID_B1 SINE B4 114 217 -7 7 1168 214 167 62 0 chr12 76479045 76479093 -44778437 + PB1D10 SINE Alu 65 115 -2 7 1168 1659 200 163 64 chr12 76479230 76479715 -44777815 - MT2A LTR ERVL 0 533 1 7 1168 36146 35 1 2 chr12 76480408 76486292 -44771238 + L1Md_T LINE L1 1 5589 -297 7 1168 9101 8 0 0 chr12 76486292 76487288 -44770242 + L1Md_T LINE L1 5590 6585 0 7 1168 881 101 14 7 chr12 76487305 76487444 -44770086 + B1_Mur3 SINE Alu 10 149 0 7 1168 253 320 168 0 chr12 76488792 76488995 -44768535 - MIR SINE MIR -18 244 8 7 1168 258 277 0 12 chr12 76489955 76490036 -44767494 - MER5A1 DNA MER1_type -86 80 1 7 1168 637 229 110 16 chr12 76491142 76491333 -44766197 - B3 SINE B2 0 216 8 7 1168 397 266 120 31 chr12 76492169 76492394 -44765136 + L1MA7 LINE L1 5950 6194 -97 7 1168 897 100 0 8 chr12 76494398 76494529 -44763001 + B1_Mur4 SINE Alu 15 144 -6 7 1168 278 194 0 15 chr12 76494530 76494598 -44762932 + GA-rich Low_complexity Low_complexity 3 69 0 7 1168 1076 73 0 0 chr12 76494766 76494903 -44762627 + B1_Mus2 SINE Alu 1 137 -10 7 1168 284 0 0 27 chr12 76494904 76494941 -44762589 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1168 213 39 0 0 chr12 76496518 76496544 -44760986 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1168 219 36 0 0 chr12 76497315 76497343 -44760187 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1168 519 282 140 6 chr12 76497357 76497535 -44759995 - ID_B1 SINE B4 -21 203 2 7 1168 766 266 122 11 chr12 76499074 76499336 -44758194 + B4A SINE B4 2 292 0 7 1168 230 235 10 0 chr12 76499338 76499440 -44758090 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 1168 496 206 0 37 chr12 76499454 76499641 -44757889 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1168 969 230 30 5 chr12 76500402 76500599 -44756931 + B3 SINE B2 2 203 -13 1 1168 249 33 0 0 chr12 76502535 76502565 -44754965 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1168 544 279 7 0 chr12 76503215 76503351 -44754179 + B1F2 SINE Alu 1 137 -12 3 1168 336 24 0 0 chr12 76503354 76503395 -44754135 + (CATA)n Simple_repeat Simple_repeat 2 42 0 4 1168 330 314 0 29 chr12 76503494 76503599 -44753931 + ID_B1 SINE B4 71 172 -52 5 1168 505 204 0 10 chr12 76503519 76503623 -44753907 + PB1D10 SINE Alu 12 114 -3 6 1168 575 267 7 0 chr12 76505407 76505557 -44751973 + MER5A1 DNA MER1_type 1 151 -15 7 1168 584 220 99 12 chr12 76505875 76506036 -44751494 - MTD LTR MaLR 0 419 245 8 1168 936 214 43 43 chr12 76506387 76506621 -44750909 - MTD LTR MaLR -107 312 79 9 1168 561 236 16 16 chr12 76506631 76506760 -44750770 - B4A SINE B4 -163 129 1 1 1168 286 307 34 0 chr12 76507619 76507707 -44749823 - Lx8 LINE L1 -242 7231 7141 1 1168 576 289 34 0 chr12 76508118 76508267 -44749263 + RSINE1 SINE B4 11 164 -1 1 1168 258 194 14 101 chr12 76508538 76508607 -44748923 + ID_B1 SINE B4 152 214 -10 1 1168 244 225 13 90 chr12 76508638 76508716 -44748814 + ID_B1 SINE B4 152 223 -1 1 1168 414 205 0 0 chr12 76509373 76509451 -44748079 + B4 SINE B4 3 80 -212 1 1168 689 169 63 99 chr12 76509457 76509680 -44747850 + Lx5 LINE L1 6836 7050 0 1 1168 633 253 89 5 chr12 76509704 76509895 -44747635 + B4 SINE B4 76 282 -10 1 1168 366 326 163 3 chr12 76510197 76510486 -44747044 - HERV16-int LTR ERVL -4144 1523 1187 1 1168 1443 147 0 13 chr12 76510820 76511048 -44746482 - URR1B DNA MER1_type 0 225 1 1 1168 411 361 14 0 chr12 76511070 76511214 -44746316 + ID_B1 SINE B4 1 146 -78 1 1168 234 298 142 26 chr12 76511998 76512153 -44745377 + LTR33 LTR ERVL 248 420 -95 2 1168 420 71 0 0 chr12 76513135 76513191 -44744339 + (TTG)n Simple_repeat Simple_repeat 3 58 0 2 1168 279 310 61 40 chr12 76514068 76514216 -44743314 + L2a LINE L2 3218 3419 -7 2 1168 558 264 123 32 chr12 76514216 76514525 -44743005 + L2a LINE L2 2737 3073 -346 2 1168 459 0 0 0 chr12 76514525 76514576 -44742954 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1168 269 287 171 73 chr12 76514576 76514845 -44742685 + L2a LINE L2 3071 3340 -35 2 1168 273 311 107 28 chr12 76515006 76515221 -44742309 + MIRb SINE MIR 19 250 -18 2 1168 206 163 0 39 chr12 76515449 76515500 -44742030 + (CATA)n Simple_repeat Simple_repeat 2 50 0 2 1168 313 222 123 22 chr12 76515676 76515814 -44741716 - MER53 DNA hAT -27 166 15 2 1168 1484 97 4 9 chr12 76518798 76519027 -44738503 - Lx LINE L1 0 6654 6427 2 1168 2211 64 7 0 chr12 76519027 76519308 -44738222 - Lx2 LINE L1 -363 6634 6352 2 1168 3409 48 0 5 chr12 76519541 76519957 -44737573 + L1_Mus1 LINE L1 6153 6566 -1 3 1168 222 174 0 0 chr12 76519975 76520021 -44737509 + A-rich Low_complexity Low_complexity 4 49 0 3 1168 281 56 0 0 chr12 76520316 76520352 -44737178 - Lx5 LINE L1 -170 6880 6845 3 1168 1022 126 179 26 chr12 76520477 76520672 -44736858 + URR1B DNA MER1_type 1 225 0 3 1168 1153 309 72 75 chr12 76520712 76521411 -44736119 + L1_Rod LINE L1 4711 5476 -824 3 1168 200 35 35 0 chr12 76521411 76521440 -44736090 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1168 1153 282 57 52 chr12 76521440 76521453 -44736077 + L1_Rod LINE L1 5477 5488 -812 3 1168 1354 79 17 0 chr12 76521453 76521630 -44735900 + B2_Mm2 SINE B2 2 181 -14 3 1168 1153 282 57 52 chr12 76521630 76521930 -44735600 + L1_Rod LINE L1 5489 5785 -515 3 1168 2801 248 96 34 chr12 76521928 76522869 -44734661 + Lx9 LINE L1 6619 7617 -27 3 1168 195 69 0 0 chr12 76523575 76523604 -44733926 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 3 1168 1196 199 0 9 chr12 76523721 76523934 -44733596 + B3 SINE B2 2 212 -4 3 1168 187 226 38 0 chr12 76526021 76526074 -44731456 - L2a LINE L2 -1 3425 3371 4 1168 200 289 76 22 chr12 76526990 76527082 -44730448 + L2a LINE L2 3326 3422 -4 4 1168 23 0 0 0 chr12 76527829 76527852 -44729678 + AT_rich Low_complexity Low_complexity 1 23 0 4 1168 22 0 0 0 chr12 76530144 76530166 -44727364 + AT_rich Low_complexity Low_complexity 1 22 0 4 1168 775 178 66 39 chr12 76530604 76530785 -44726745 - B3 SINE B2 -23 193 8 4 1168 294 298 17 9 chr12 76530782 76530894 -44726636 - MLT1J LTR MaLR -320 290 111 4 1168 186 360 0 0 chr12 76531248 76531323 -44726207 + MIR3 SINE MIR 130 204 -4 4 1168 216 0 0 0 chr12 76531728 76531752 -44725778 + (TAA)n Simple_repeat Simple_repeat 2 25 0 4 1168 336 306 131 14 chr12 76531796 76531978 -44725552 - MIR SINE MIR -57 211 2 4 1168 529 326 39 22 chr12 76532103 76532242 -44725288 + B3A SINE B2 2 147 -51 4 1168 483 18 0 0 chr12 76532242 76532298 -44725232 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1168 529 326 39 22 chr12 76532298 76532337 -44725193 + B3A SINE B2 148 183 -15 4 1168 313 143 0 0 chr12 76532382 76532438 -44725092 + B1_Mus2 SINE Alu 80 135 -12 5 1168 378 61 0 0 chr12 76532450 76532499 -44725031 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 5 1168 670 84 9 9 chr12 76532559 76532667 -44724863 + (GGAA)n Simple_repeat Simple_repeat 2 109 0 5 1168 289 200 134 72 chr12 76532811 76532908 -44724622 + B1F SINE Alu 13 115 -34 5 1168 406 309 122 72 chr12 76533085 76533389 -44724141 - ORR1E LTR MaLR -5 354 33 5 1168 2259 100 72 26 chr12 76533389 76533780 -44723750 - RLTR9E LTR ERVK 0 409 1 5 1168 406 309 122 72 chr12 76533780 76533810 -44723720 - ORR1E LTR MaLR -327 32 3 5 1168 501 287 20 13 chr12 76533909 76534061 -44723469 + HAL1 LINE L1 1537 1689 -818 5 1168 314 300 6 66 chr12 76534160 76534342 -44723188 + HAL1 LINE L1 2260 2430 -77 5 1168 609 200 160 39 chr12 76534577 76534733 -44722797 + B3 SINE B2 1 175 -41 5 1168 731 216 55 124 chr12 76534868 76535085 -44722445 - B3 SINE B2 -10 206 5 5 1168 234 0 0 0 chr12 76535108 76535134 -44722396 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1168 2070 178 108 86 chr12 76535216 76535764 -44721766 - RMER20B LTR ERVK 0 627 68 6 1168 7605 70 0 12 chr12 76535764 76536819 -44720711 - L1Md_F2 LINE L1 -12 6570 5533 6 1168 1019 132 58 5 chr12 76537241 76537431 -44720099 - URR1B DNA MER1_type 0 225 26 6 1168 260 286 107 94 chr12 76537440 76537690 -44719840 + RSINE1 SINE B4 48 292 0 6 1168 223 244 0 0 chr12 76537697 76537742 -44719788 + GA-rich Low_complexity Low_complexity 2 46 0 6 1168 344 218 46 0 chr12 76538376 76538463 -44719067 + Lx8 LINE L1 5815 5905 -1568 6 1168 276 30 0 0 chr12 76538467 76538500 -44719030 + (TATG)n Simple_repeat Simple_repeat 1 33 0 6 1168 693 235 14 23 chr12 76538821 76539012 -44718518 + Lx7 LINE L1 5580 5779 -524 6 1168 803 290 73 22 chr12 76539013 76539288 -44718242 + B4 SINE B4 1 289 -3 6 1168 514 277 31 21 chr12 76539327 76539519 -44718011 + Lx7 LINE L1 5721 5922 -381 6 1168 25 24 0 23 chr12 76539519 76539535 -44717995 + AT_rich Low_complexity Low_complexity 1 16 0 7 1168 1213 61 0 0 chr12 76539535 76539682 -44717848 - B1_Mus2 SINE Alu 0 147 1 7 1168 25 24 0 23 chr12 76539682 76539708 -44717822 + AT_rich Low_complexity Low_complexity 1 26 0 7 1168 3275 63 2 0 chr12 76540814 76541213 -44716317 + MTB LTR MaLR 1 400 0 7 1168 1603 114 30 0 chr12 76541213 76541477 -44716053 + MTB-int LTR MaLR 1 272 -826 7 1168 312 361 25 0 chr12 76542154 76542273 -44715257 - MLT1C LTR MaLR -71 396 275 7 1168 812 286 136 12 chr12 76542885 76543143 -44714387 + B4 SINE B4 1 290 -2 7 1168 348 24 0 0 chr12 76543169 76543210 -44714320 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1168 378 0 0 0 chr12 76543210 76543251 -44714279 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 1168 1280 228 79 42 chr12 76543334 76543687 -44713843 + MTE2b LTR MaLR 1 366 -13 7 1168 311 284 177 10 chr12 76544640 76544843 -44712687 + MLT1F-int LTR MaLR 671 907 -582 7 1168 1018 231 57 21 chr12 76544915 76545194 -44712336 + B4 SINE B4 2 290 -2 8 1168 238 297 40 13 chr12 76545848 76545923 -44711607 - RSINE1 SINE B4 0 165 89 8 18 243 247 100 11 chr12 76545979 76546069 -44711461 - HAL1 LINE L1 -950 1557 1460 8 1169 781 234 89 10 chr12 76546209 76546412 -44711118 + ID_B1 SINE B4 3 221 -3 8 1169 282 254 43 9 chr12 76547577 76547692 -44709838 + L1MC4a LINE L1 7430 7548 -334 8 1169 236 290 91 30 chr12 76548187 76548459 -44709071 + L1MEf LINE L1 5336 5605 -575 8 1169 714 229 164 0 chr12 76548586 76548769 -44708761 + B3 SINE B2 1 213 -3 8 1169 269 218 18 0 chr12 76548771 76548826 -44708704 + L1MB7 LINE L1 5862 5917 -267 8 1169 1200 55 0 0 chr12 76549587 76549733 -44707797 + B1_Mus2 SINE Alu 2 147 0 8 1169 231 310 14 0 chr12 76551085 76551156 -44706374 + GA-rich Low_complexity Low_complexity 4 75 0 8 1169 21 0 0 0 chr12 76552101 76552122 -44705408 + AT_rich Low_complexity Low_complexity 1 21 0 9 1169 33 0 0 0 chr12 76555303 76555336 -44702194 + AT_rich Low_complexity Low_complexity 1 33 0 9 1169 25 31 0 0 chr12 76555577 76555609 -44701921 + AT_rich Low_complexity Low_complexity 1 32 0 9 1169 950 120 258 0 chr12 76555991 76556158 -44701372 + B3 SINE B2 5 214 -2 9 1169 21 0 0 0 chr12 76556512 76556533 -44700997 + AT_rich Low_complexity Low_complexity 1 21 0 9 1169 874 196 6 19 chr12 76556561 76556722 -44700808 + B3 SINE B2 1 159 -57 9 1169 1356 91 0 0 chr12 76556722 76557118 -44700412 + (CA)n Simple_repeat Simple_repeat 1 396 0 9 1169 821 216 37 31 chr12 76557118 76557144 -44700386 + B3A SINE B2 165 190 -8 9 1169 310 304 13 0 chr12 76557157 76557236 -44700294 + PB1D7 SINE Alu 14 93 -27 9 1169 342 200 47 57 chr12 76557678 76557784 -44699746 - L1ME1 LINE L1 -191 5988 5884 9 1169 444 216 66 49 chr12 76557802 76557924 -44699606 - ID_B1 SINE B4 -6 218 95 9 1169 224 111 22 0 chr12 76558570 76558615 -44698915 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1169 223 292 27 40 chr12 76558617 76558692 -44698838 - ID4 SINE ID -9 74 1 1 1169 935 251 24 5 chr12 76558852 76559064 -44698466 - B3 SINE B2 0 216 1 1 1169 27 29 0 0 chr12 76559075 76559109 -44698421 + AT_rich Low_complexity Low_complexity 1 34 0 1 1169 1407 191 112 47 chr12 76559588 76559928 -44697602 + ORR1C1 LTR MaLR 3 364 -14 1 1169 920 186 7 0 chr12 76559975 76560120 -44697410 + B1_Mus2 SINE Alu 2 147 0 1 1169 29 0 0 0 chr12 76560126 76560155 -44697375 + AT_rich Low_complexity Low_complexity 1 29 0 1 1169 647 250 0 0 chr12 76561015 76561135 -44696395 - ID_B1 SINE B4 -24 200 81 1 1169 231 276 32 84 chr12 76561326 76561337 -44696193 + B1_Mus1 SINE Alu 1 10 -138 1 1169 513 0 0 0 chr12 76561337 76561394 -44696136 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1169 350 286 29 67 chr12 76561394 76561499 -44696031 + PB1D10 SINE Alu 10 112 -5 1 1169 433 196 11 55 chr12 76562849 76562956 -44694574 + PB1D10 SINE Alu 30 111 -6 1 1169 287 285 114 0 chr12 76563742 76563853 -44693677 + ORR1D2 LTR MaLR 1 122 -248 1 1169 363 244 94 10 chr12 76564170 76564306 -44693224 - MIRb SINE MIR -91 177 19 1 1169 387 290 11 0 chr12 76564443 76564536 -44692994 + MLT1B LTR MaLR 286 379 -11 1 1169 654 197 77 57 chr12 76565544 76565738 -44691792 + B3A SINE B2 1 198 0 1 1169 728 237 11 34 chr12 76566123 76566298 -44691232 + B4A SINE B4 5 175 -117 1 1169 217 281 66 94 chr12 76566224 76566330 -44691200 + PB1 SINE Alu 18 120 -7 1 1169 182 37 37 0 chr12 76566701 76566728 -44690802 + (TCTCCC)n Simple_repeat Simple_repeat 4 31 0 1 1169 466 210 11 120 chr12 76567969 76568061 -44689469 - PB1 SINE Alu -45 104 23 1 1169 449 261 68 37 chr12 76568415 76568606 -44688924 - MER121 Unknown Unknown -142 270 74 1 1169 298 222 80 23 chr12 76568773 76568860 -44688670 - B1F SINE Alu -8 109 5 1 1169 235 200 121 36 chr12 76568787 76568870 -44688660 + YREP_Mm Unknown Unknown 234 323 -1489 1 1169 349 259 24 0 chr12 76569365 76569450 -44688080 + ID_B1 SINE B4 79 165 -59 1 1169 338 270 59 10 chr12 76569374 76569475 -44688055 + PB1D7 SINE Alu 7 112 -8 1 1169 224 196 0 56 chr12 76570597 76570651 -44686879 + GA-rich Low_complexity Low_complexity 2 52 0 1 1169 254 301 101 19 chr12 76571120 76571279 -44686251 - MIR SINE MIR -93 175 4 1 1169 414 0 0 0 chr12 76571693 76571739 -44685791 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1169 702 125 0 0 chr12 76571740 76571852 -44685678 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 1169 231 292 11 12 chr12 76571864 76571944 -44685586 + PB1D10 SINE Alu 24 106 -43 1 1169 787 263 149 14 chr12 76571963 76572407 -44685123 + L1M4 LINE L1 4634 5136 -1007 1 1169 522 275 146 10 chr12 76572488 76572700 -44684830 + B4A SINE B4 45 286 -6 1 1169 297 215 12 25 chr12 76572748 76572829 -44684701 + L1MB7 LINE L1 6105 6184 0 1 1169 204 250 0 0 chr12 76572930 76572978 -44684552 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1169 223 330 53 30 chr12 76573238 76573419 -44684111 - L2b LINE L2 -9 3366 3209 1 1169 492 18 0 0 chr12 76573480 76573537 -44683993 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1169 210 150 0 0 chr12 76575805 76575845 -44681685 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1169 444 19 0 0 chr12 76575918 76575971 -44681559 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1169 242 319 0 0 chr12 76576705 76576777 -44680753 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1169 687 156 0 0 chr12 76576783 76576905 -44680625 + CT-rich Low_complexity Low_complexity 1 122 0 1 1169 387 92 0 0 chr12 76576918 76576983 -44680547 + (TCTG)n Simple_repeat Simple_repeat 3 67 0 1 1169 299 258 97 0 chr12 76577175 76577268 -44680262 + B3A SINE B2 1 102 -96 1 1169 561 193 8 58 chr12 76577480 76577601 -44679929 + PB1D9 SINE Alu 1 115 -5 1 1169 228 380 14 14 chr12 76577804 76577876 -44679654 + PB1D10 SINE Alu 3 74 -43 1 1169 680 233 14 14 chr12 76577918 76578066 -44679464 + RSINE1 SINE B4 5 152 -13 1 1169 2212 191 75 22 chr12 76578259 76578714 -44678816 - RMER19B LTR ERVK -423 479 1 1 1169 884 52 0 0 chr12 76580141 76580257 -44677273 + B1_Mus2 SINE Alu 32 147 0 1 1169 218 270 40 26 chr12 76580427 76580503 -44677027 - MIRm SINE MIR -126 150 74 1 1169 573 283 14 7 chr12 76580503 76580649 -44676881 + B1F2 SINE Alu 1 147 -2 1 1169 198 326 10 71 chr12 76580649 76580671 -44676859 - MIR SINE MIR -196 66 51 1 1169 189 281 127 49 chr12 76580765 76580907 -44676623 + L3 LINE CR1 2566 2718 -1771 1 1169 330 303 153 30 chr12 76581068 76581365 -44676165 + MLT1A1 LTR MaLR 1 376 -32 1 1169 312 287 107 15 chr12 76581408 76581539 -44675991 + Tigger7 DNA MER2_type 58 200 -2291 1 1169 852 166 26 46 chr12 76582313 76582465 -44675065 + B1_Mur3 SINE Alu 1 149 0 1 1169 234 394 0 0 chr12 76582629 76582695 -44674835 + tRNA-Ala-GCA tRNA tRNA 2 67 -8 1 1169 1658 224 40 8 chr12 76583579 76583930 -44673600 - ORR1D2 LTR MaLR -8 362 1 1 1169 216 357 91 15 chr12 76584091 76584290 -44673240 + L3 LINE CR1 3474 3687 -802 1 1169 216 0 0 0 chr12 76584358 76584382 -44673148 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1169 502 288 18 18 chr12 76585620 76585783 -44671747 + RSINE1 SINE B4 3 165 0 1 1169 25 0 0 0 chr12 76585790 76585815 -44671715 + AT_rich Low_complexity Low_complexity 1 25 0 1 1169 1439 86 11 5 chr12 76586504 76586692 -44670838 + B2_Mm2 SINE B2 1 189 -6 1 1169 189 292 0 0 chr12 76586906 76586954 -44670576 + MIR SINE MIR 42 89 -119 1 1169 261 139 0 0 chr12 76587245 76587288 -44670242 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1169 343 248 67 38 chr12 76587340 76587445 -44670085 + PB1D10 SINE Alu 10 117 0 1 1169 278 305 117 10 chr12 76587451 76587656 -44669874 - Charlie1a DNA MER1_type -249 1206 980 1 1169 219 261 0 0 chr12 76587861 76587907 -44669623 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1 1169 830 289 207 55 chr12 76587964 76588668 -44668862 - Charlie1a DNA MER1_type -498 957 147 1 1169 792 167 14 0 chr12 76588675 76588813 -44668717 + B1_Mur2 SINE Alu 9 148 -1 1 1169 441 0 0 0 chr12 76589033 76589082 -44668448 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1169 198 71 0 0 chr12 76589082 76589109 -44668421 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1169 24 32 0 0 chr12 76589109 76589140 -44668390 + AT_rich Low_complexity Low_complexity 1 31 0 1 1169 510 107 0 13 chr12 76589289 76589365 -44668165 - B1_Mus1 SINE Alu -73 75 1 1 1169 326 250 0 14 chr12 76589304 76589377 -44668153 - ID_B1 SINE B4 -83 141 70 1 1169 409 277 50 28 chr12 76590646 76590703 -44666827 + B1F1 SINE Alu 1 63 -86 1 1169 3509 38 5 0 chr12 76590703 76591095 -44666435 + MTA_Mm LTR MaLR 1 394 -2 1 1169 409 277 50 28 chr12 76591095 76591178 -44666352 + B1F1 SINE Alu 64 143 -6 1 1169 330 253 95 42 chr12 76591390 76591485 -44666045 - RSINE1 SINE B4 -62 103 4 1 1169 495 306 64 80 chr12 76591680 76591868 -44665662 - ID_B1 SINE B4 -35 257 73 1 1169 1427 139 8 12 chr12 76591868 76592108 -44665422 - Lx LINE L1 -2 6652 6414 1 1169 231 309 71 0 chr12 76592152 76592236 -44665294 + Tigger12 DNA MER2_type 821 910 -1049 1 1169 362 299 9 18 chr12 76592710 76592819 -44664711 + Lx8 LINE L1 7243 7350 -123 1 1169 407 194 215 0 chr12 76592827 76592920 -44664610 + PB1D9 SINE Alu 1 113 -7 1 1169 21 36 0 0 chr12 76593050 76593078 -44664452 + AT_rich Low_complexity Low_complexity 1 28 0 1 1169 24 53 0 0 chr12 76593103 76593141 -44664389 + AT_rich Low_complexity Low_complexity 1 38 0 1 1169 1641 52 0 10 chr12 76593184 76593378 -44664152 - B2_Mm1a SINE B2 0 193 2 1 1169 229 323 14 91 chr12 76593871 76594014 -44663516 + LTR48B LTR ERV1 6 137 -507 1 1169 21 0 0 0 chr12 76594888 76594909 -44662621 + AT_rich Low_complexity Low_complexity 1 21 0 1 1169 439 186 170 38 chr12 76595383 76595489 -44662041 - PB1D9 SINE Alu 0 120 1 1 1169 250 295 95 0 chr12 76595565 76595660 -44661870 - L2a LINE L2 -21 3405 3302 1 1169 1078 205 34 19 chr12 76595950 76596159 -44661371 + B3 SINE B2 5 216 0 1 1169 844 279 19 24 chr12 76598075 76598267 -44659263 + B3 SINE B2 1 193 -23 1 1169 389 101 0 37 chr12 76598267 76598349 -44659181 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1169 252 0 0 0 chr12 76598353 76598381 -44659149 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1169 326 250 138 9 chr12 76599228 76599337 -44658193 - MER53 DNA hAT -65 128 6 1 1169 21 57 0 0 chr12 76599569 76599604 -44657926 + AT_rich Low_complexity Low_complexity 1 35 0 1 1169 931 148 0 14 chr12 76600554 76600698 -44656832 - B1_Mur4 SINE Alu -6 144 3 1 1169 203 255 0 0 chr12 76602289 76602336 -44655194 + GA-rich Low_complexity Low_complexity 4 50 0 1 1169 226 205 0 0 chr12 76602644 76602683 -44654847 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1169 234 308 73 30 chr12 76603204 76603368 -44654162 - HAL1 LINE L1 -2249 258 88 1 1169 23 0 0 0 chr12 76604987 76605010 -44652520 + AT_rich Low_complexity Low_complexity 1 23 0 1 1169 739 161 311 0 chr12 76605115 76605276 -44652254 + B3 SINE B2 4 214 -2 1 1169 447 19 0 0 chr12 76605289 76605341 -44652189 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 1 1169 222 37 0 0 chr12 76606344 76606371 -44651159 + (TCCCC)n Simple_repeat Simple_repeat 3 29 0 1 1169 29 0 0 0 chr12 76606940 76606969 -44650561 + AT_rich Low_complexity Low_complexity 1 29 0 1 1169 862 171 58 78 chr12 76607266 76607457 -44650073 + B2_Mm2 SINE B2 3 189 -6 1 1169 879 182 0 40 chr12 76607488 76607637 -44649893 + B1_Mm SINE Alu 4 146 -1 2 1169 524 271 14 0 chr12 76607719 76607863 -44649667 + RMER15-int LTR ERVL 4148 4293 -706 2 1169 1457 293 35 27 chr12 76607876 76608364 -44649166 + Lx8 LINE L1 6427 6918 -555 2 1169 1287 41 7 0 chr12 76608365 76608511 -44649019 + B1_Mus2 SINE Alu 1 147 0 2 1169 754 247 133 61 chr12 76608548 76608729 -44648801 + B3 SINE B2 2 195 0 2 1169 749 268 13 19 chr12 76608768 76608924 -44648606 + B3A SINE B2 2 156 -42 2 1169 225 0 0 0 chr12 76608946 76608971 -44648559 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 2 1169 483 73 0 0 chr12 76608999 76609067 -44648463 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1169 735 216 119 16 chr12 76609082 76609275 -44648255 - B3 SINE B2 0 216 4 2 1169 357 207 71 24 chr12 76609291 76609375 -44648155 + Lx8 LINE L1 6906 6993 -480 2 1169 315 0 0 0 chr12 76609715 76609750 -44647780 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1169 364 254 0 27 chr12 76609788 76609861 -44647669 + ID4_ SINE ID 2 72 -11 2 1169 441 0 0 0 chr12 76610080 76610129 -44647401 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1169 1238 36 7 0 chr12 76610856 76610994 -44646536 + B1_Mus1 SINE Alu 4 142 -6 2 1169 522 0 0 0 chr12 76611013 76611071 -44646459 + (GAA)n Simple_repeat Simple_repeat 2 59 0 2 1169 31 26 0 0 chr12 76611311 76611349 -44646181 + AT_rich Low_complexity Low_complexity 1 38 0 2 1169 342 364 34 40 chr12 76611505 76611654 -44645876 + B1F SINE Alu 1 148 -1 2 1169 299 311 0 0 chr12 76611659 76611733 -44645797 + ID2 SINE ID 3 76 -7 2 1169 237 312 94 0 chr12 76612236 76612332 -44645198 - MIR3 SINE MIR -29 179 75 2 1169 189 365 0 0 chr12 76612909 76612977 -44644553 - MIR SINE MIR -4 264 193 2 1169 25 31 0 0 chr12 76613395 76613427 -44644103 + AT_rich Low_complexity Low_complexity 1 32 0 2 1169 482 242 233 8 chr12 76613980 76614246 -44643284 + L1MC1 LINE L1 5493 5818 -515 2 1169 549 276 29 15 chr12 76614256 76614392 -44643138 + B1F SINE Alu 2 139 -10 2 1169 820 279 55 10 chr12 76614512 76614804 -44642726 + L1MC1 LINE L1 6030 6333 -11 2 1169 1566 69 11 0 chr12 76614909 76615098 -44642432 + B2_Mm1t SINE B2 2 192 -1 2 1169 385 298 114 30 chr12 76615359 76615560 -44641970 - MER20 DNA MER1_type 0 219 2 2 1169 279 0 0 0 chr12 76615652 76615683 -44641847 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1169 804 265 84 70 chr12 76617337 76617621 -44639909 + B4 SINE B4 5 292 0 2 1169 186 103 0 0 chr12 76617873 76617902 -44639628 + (CATG)n Simple_repeat Simple_repeat 3 31 0 2 1169 682 296 56 10 chr12 76617986 76618184 -44639346 + ID_B1 SINE B4 1 207 -17 2 1169 628 313 0 12 chr12 76618198 76618363 -44639167 + RSINE1 SINE B4 2 164 -1 2 1169 1284 261 154 19 chr12 76618379 76618910 -44638620 + Lx8 LINE L1 6871 7473 0 2 1169 743 211 21 14 chr12 76618935 76619079 -44638451 + B1_Mur1 SINE Alu 5 149 0 2 1169 3566 188 75 13 chr12 76619196 76619986 -44637544 + RMER1B Other Other 55 1062 -4 2 1169 939 215 283 37 chr12 76620100 76620309 -44637221 + ORR1D1 LTR MaLR 1 223 -151 2 1169 242 106 21 0 chr12 76620309 76620356 -44637174 + (CCTG)n Simple_repeat Simple_repeat 3 50 0 2 1169 939 215 283 37 chr12 76620356 76620446 -44637084 + ORR1D1 LTR MaLR 224 373 -1 2 1169 1216 75 0 0 chr12 76620761 76620907 -44636623 + B1_Mus2 SINE Alu 2 147 0 2 1169 639 293 56 48 chr12 76621254 76621505 -44636025 - MIR SINE MIR -1 261 9 2 1169 227 133 22 22 chr12 76621952 76621998 -44635532 + CT-rich Low_complexity Low_complexity 2 47 0 2 1169 440 77 0 15 chr12 76622230 76622296 -44635234 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 2 1169 956 65 0 0 chr12 76622296 76622420 -44635110 - B1_Mus1 SINE Alu 0 148 25 2 1169 579 184 421 0 chr12 76622467 76622619 -44634911 + B3 SINE B2 1 216 0 2 1169 1175 152 117 0 chr12 76623138 76623335 -44634195 + RMER20A LTR ERVK 297 516 0 2 1169 337 270 70 0 chr12 76623519 76623619 -44633911 + ID_B1 SINE B4 109 215 -9 2 1169 601 169 235 8 chr12 76624109 76624228 -44633302 + B1_Mur4 SINE Alu 1 146 -4 2 1169 188 122 0 24 chr12 76624229 76624271 -44633259 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 2 1169 23 33 0 0 chr12 76624291 76624321 -44633209 + AT_rich Low_complexity Low_complexity 1 30 0 2 1169 188 0 74 0 chr12 76624496 76624523 -44633007 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1169 221 288 14 43 chr12 76624707 76624776 -44632754 + MER5B DNA MER1_type 112 178 0 2 1169 197 323 15 0 chr12 76625248 76625313 -44632217 - MIRc SINE MIR -126 142 77 2 1169 24 53 0 0 chr12 76625968 76626006 -44631524 + AT_rich Low_complexity Low_complexity 1 38 0 2 1169 1064 64 0 21 chr12 76626006 76626150 -44631380 - B1_Mus1 SINE Alu 0 148 8 2 1169 255 271 8 8 chr12 76626047 76626170 -44631360 - ORR1B1-int LTR MaLR -756 753 631 2 1169 988 208 104 0 chr12 76626348 76626540 -44630990 + B3 SINE B2 4 215 -1 2 1169 21 0 0 0 chr12 76626541 76626562 -44630968 + AT_rich Low_complexity Low_complexity 1 21 0 2 1169 373 309 9 18 chr12 76626573 76626685 -44630845 + B4A SINE B4 2 112 -180 2 1169 326 296 11 0 chr12 76626787 76626875 -44630655 + B1_Mur2 SINE Alu 18 106 -43 2 1169 293 317 109 26 chr12 76626886 76627236 -44630294 - L2a LINE L2 -114 3312 2934 2 1169 636 121 0 46 chr12 76627380 76627510 -44630020 + G-rich Low_complexity Low_complexity 5 128 0 2 1169 375 23 0 0 chr12 76628217 76628261 -44629269 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 2 1169 349 300 117 6 chr12 76630602 76630773 -44626757 - MIR SINE MIR 0 262 73 2 1169 210 105 0 0 chr12 76630846 76630884 -44626646 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 1169 632 25 0 12 chr12 76630917 76630998 -44626532 - B1_Mus2 SINE Alu 0 147 68 2 1169 268 273 12 94 chr12 76632387 76632472 -44625058 + ID4_ SINE ID 4 81 -2 2 1169 420 275 137 0 chr12 76632557 76632688 -44624842 + RSINE1 SINE B4 11 159 -6 2 1169 190 288 49 24 chr12 76632731 76632813 -44624717 - MIR SINE MIR -56 152 69 2 1169 330 248 143 0 chr12 76632835 76632940 -44624590 + PB1D7 SINE Alu 1 120 0 2 1169 238 222 27 27 chr12 76633178 76633252 -44624278 - MIR SINE MIR -119 143 70 2 1169 203 83 83 0 chr12 76633393 76633429 -44624101 + A-rich Low_complexity Low_complexity 3 41 0 2 1169 1082 116 27 0 chr12 76633433 76633579 -44623951 + B1_Mur4 SINE Alu 1 150 0 2 1169 612 0 0 0 chr12 76633587 76633655 -44623875 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 2 1169 821 264 39 30 chr12 76633721 76633924 -44623606 + B3 SINE B2 1 205 -11 2 1169 205 146 0 40 chr12 76633928 76633978 -44623552 + A-rich Low_complexity Low_complexity 3 50 0 2 1169 2062 176 27 21 chr12 76634139 76634511 -44623019 - ORR1D1 LTR MaLR 0 374 1 2 1169 695 191 0 16 chr12 76634675 76634803 -44622727 + B1F2 SINE Alu 23 148 -1 2 1169 24 0 0 0 chr12 76636248 76636272 -44621258 + AT_rich Low_complexity Low_complexity 1 24 0 2 1169 495 212 0 0 chr12 76636286 76636366 -44621164 + BC1_Mm scRNA scRNA 1 80 -72 2 1169 409 232 47 0 chr12 76636769 76636873 -44620657 + PB1D9 SINE Alu 3 112 -37 2 1169 32 0 0 0 chr12 76636877 76636909 -44620621 + AT_rich Low_complexity Low_complexity 1 32 0 2 1169 418 278 130 6 chr12 76637008 76637260 -44620270 - Charlie1b DNA MER1_type -231 292 14 2 1169 246 240 67 0 chr12 76637950 76638025 -44619505 - MADE2 DNA Mariner 0 80 1 2 1169 274 243 86 0 chr12 76638518 76638588 -44618942 + Charlie2b DNA MER1_type 1790 1865 -917 2 1169 201 108 0 0 chr12 76638635 76638672 -44618858 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1169 351 0 0 0 chr12 76638672 76638711 -44618819 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1169 455 294 169 72 chr12 76638717 76638916 -44618614 + MTEb LTR MaLR 53 289 -90 2 1169 970 193 90 19 chr12 76638916 76639127 -44618403 + URR1A DNA MER1_type 1 226 0 2 1169 455 307 27 54 chr12 76639127 76639217 -44618313 + MTEb LTR MaLR 290 379 0 2 1169 404 263 116 66 chr12 76639222 76639540 -44617990 + Charlie2b DNA MER1_type 1884 2217 -565 2 1169 443 307 80 7 chr12 76639677 76639828 -44617702 + RSINE1 SINE B4 3 164 -1 2 1169 649 187 288 24 chr12 76639953 76640123 -44617407 - B3 SINE B2 0 216 2 2 1169 28 0 0 0 chr12 76640125 76640153 -44617377 + AT_rich Low_complexity Low_complexity 1 28 0 2 1169 1803 158 129 11 chr12 76640390 76640755 -44616775 - MTD LTR MaLR 0 419 12 2 1169 626 260 21 36 chr12 76643008 76643183 -44614347 - ID_B1 SINE B4 -36 256 81 2 1169 381 260 0 68 chr12 76643276 76643379 -44614151 + RSINE1 SINE B4 3 98 -67 2 1169 522 131 0 0 chr12 76643407 76643506 -44614024 + (TC)n Simple_repeat Simple_repeat 2 100 0 2 1169 189 0 0 0 chr12 76643508 76643529 -44614001 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1169 387 0 0 0 chr12 76643529 76643572 -44613958 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 2 1169 872 90 107 0 chr12 76643572 76643694 -44613836 - B1_Mus1 SINE Alu -12 136 2 2 1169 788 222 0 0 chr12 76644707 76644842 -44612688 - B1_Mus2 SINE Alu -12 135 1 2 1169 431 271 90 8 chr12 76644893 76645027 -44612503 - B1F SINE Alu -2 147 3 2 1169 226 311 0 127 chr12 76644929 76645047 -44612483 - MT2B2 LTR ERVL -330 254 152 2 1169 336 270 11 11 chr12 76645184 76645274 -44612256 - PB1D10 SINE Alu -2 115 26 2 1169 210 37 0 0 chr12 76646011 76646038 -44611492 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2 1169 21 57 0 0 chr12 76646502 76646537 -44610993 + AT_rich Low_complexity Low_complexity 1 35 0 2 1169 249 231 292 0 chr12 76647031 76647096 -44610434 + RSINE1 SINE B4 5 88 -77 3 1169 256 239 0 14 chr12 76647765 76647836 -44609694 + RSINE1 SINE B4 90 136 -29 3 1169 952 251 15 15 chr12 76647855 76648057 -44609473 - B3 SINE B2 -10 206 5 3 1169 33 0 0 0 chr12 76648081 76648114 -44609416 + AT_rich Low_complexity Low_complexity 1 33 0 3 1169 537 256 30 15 chr12 76648121 76648252 -44609278 + RSINE1 SINE B4 2 134 -31 3 1169 371 204 274 0 chr12 76648287 76648400 -44609130 + B1_Mus1 SINE Alu 5 148 -1 3 1169 21 0 0 0 chr12 76648406 76648427 -44609103 + AT_rich Low_complexity Low_complexity 1 21 0 3 1169 611 271 144 10 chr12 76648774 76648968 -44608562 + ID_B1 SINE B4 1 220 -4 3 1169 366 247 58 58 chr12 76649006 76649109 -44608421 + B1F2 SINE Alu 6 108 -41 3 1169 431 273 43 43 chr12 76649129 76649290 -44608240 + RSINE1 SINE B4 4 164 -1 3 1169 313 267 23 0 chr12 76651058 76651144 -44606386 + ID_B1 SINE B4 82 169 -55 3 1169 377 226 48 10 chr12 76651067 76651170 -44606360 + PB1D10 SINE Alu 10 116 -1 3 1169 429 70 0 0 chr12 76651172 76651229 -44606301 + (CATA)n Simple_repeat Simple_repeat 2 58 0 3 1169 21 0 0 0 chr12 76651433 76651454 -44606076 + AT_rich Low_complexity Low_complexity 1 21 0 3 1169 1094 250 122 34 chr12 76651796 76652123 -44605407 + ORR1D2 LTR MaLR 15 370 0 3 1169 232 310 97 61 chr12 76652399 76652595 -44604935 - Charlie23a DNA MER1_type -121 218 16 3 1169 299 300 128 40 chr12 76652835 76652960 -44604570 - ID_B1 SINE B4 -11 213 78 3 1169 311 241 0 0 chr12 76653247 76653301 -44604229 - ID4_ SINE ID -12 71 18 3 1169 262 273 14 108 chr12 76653301 76653321 -44604209 - ID SINE ID -152 72 6 3 1169 256 224 74 16 chr12 76653331 76653430 -44604100 - B1F SINE Alu -6 143 12 3 1169 244 287 28 45 chr12 76653477 76653637 -44603893 - MIR3 SINE MIR -27 181 28 3 1169 212 307 148 20 chr12 76654277 76654473 -44603057 - MIR SINE MIR -15 247 27 3 1169 207 125 0 0 chr12 76654631 76654671 -44602859 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1169 393 39 0 0 chr12 76654671 76654722 -44602808 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1169 352 288 45 0 chr12 76654792 76654924 -44602606 + L1MB7 LINE L1 6031 6168 -16 3 1169 467 184 13 0 chr12 76654957 76655033 -44602497 + ID4 SINE ID 3 79 -4 3 1169 24 67 0 0 chr12 76655047 76655092 -44602438 + AT_rich Low_complexity Low_complexity 1 45 0 3 1169 1130 250 40 14 chr12 76655271 76655547 -44601983 + B4 SINE B4 1 283 -9 3 1169 207 184 26 0 chr12 76655569 76655607 -44601923 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1169 450 299 36 0 chr12 76655654 76655791 -44601739 - B1F1 SINE Alu -7 142 1 3 1169 296 222 0 0 chr12 76655804 76655858 -44601672 + B1F1 SINE Alu 7 60 -89 3 1169 204 67 0 0 chr12 76655883 76655913 -44601617 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 3 1169 603 0 0 0 chr12 76655962 76656029 -44601501 + (GAAA)n Simple_repeat Simple_repeat 4 70 0 3 1169 201 275 36 36 chr12 76656313 76656396 -44601134 - MIRc SINE MIR -116 152 70 3 1169 26 0 0 0 chr12 76656605 76656631 -44600899 + AT_rich Low_complexity Low_complexity 1 26 0 3 1169 1323 267 39 22 chr12 76656834 76657190 -44600340 + ORR1D2 LTR MaLR 1 362 -8 3 1169 295 227 39 26 chr12 76657228 76657305 -44600225 + ID4 SINE ID 1 78 -5 3 1169 558 217 149 83 chr12 76657709 76657890 -44599640 - B3A SINE B2 -5 193 1 3 1169 374 262 38 102 chr12 76657911 76658068 -44599462 + B1_Mus2 SINE Alu 1 147 0 3 1169 293 246 0 104 chr12 76658085 76658162 -44599368 + B1F SINE Alu 74 142 -7 3 1169 272 286 92 57 chr12 76658198 76658339 -44599191 + B1_Mus2 SINE Alu 1 146 -1 3 1169 532 172 161 15 chr12 76658343 76658473 -44599057 + B1_Mur3 SINE Alu 1 149 0 3 1169 293 378 18 9 chr12 76658486 76658598 -44598932 + PB1 SINE Alu 10 122 -5 3 1169 276 53 0 0 chr12 76659831 76659869 -44597661 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1169 767 207 0 21 chr12 76660737 76660880 -44596650 + B1_Mus2 SINE Alu 7 146 -1 3 1169 377 215 0 11 chr12 76660890 76660984 -44596546 + GA-rich Low_complexity Low_complexity 2 94 0 3 1169 323 274 22 113 chr12 76661260 76661336 -44596194 + MT2B2 LTR ERVL 95 153 -431 3 1169 603 179 0 26 chr12 76661336 76661451 -44596079 + PB1D10 SINE Alu 1 112 -5 3 1169 249 227 207 57 chr12 76661451 76661476 -44596054 + B4A SINE B4 86 246 -46 3 1169 181 303 66 22 chr12 76661615 76661706 -44595824 - MIRm SINE MIR -141 135 41 3 1169 837 290 96 4 chr12 76661723 76661983 -44595547 - MTE2b LTR MaLR -93 286 3 3 1169 646 261 244 54 chr12 76662008 76662562 -44594968 + Lx8 LINE L1 6815 7473 0 3 1169 245 192 0 0 chr12 76662634 76662686 -44594844 + A-rich Low_complexity Low_complexity 1 52 0 3 1169 906 238 178 57 chr12 76662711 76663155 -44594375 + L1MB7 LINE L1 5223 5756 -408 3 1169 2570 89 3 12 chr12 76663155 76663485 -44594045 + ORR1A2 LTR MaLR 1 327 0 3 1169 906 267 222 26 chr12 76663485 76663601 -44593929 + L1MB7 LINE L1 5757 5903 -281 3 1169 321 68 0 0 chr12 76663601 76663645 -44593885 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1169 906 269 184 24 chr12 76663645 76663843 -44593687 + L1MB7 LINE L1 5904 6145 -33 3 1169 545 241 69 0 chr12 76663890 76664006 -44593524 + RSINE1 SINE B4 2 125 -40 3 1169 369 0 0 0 chr12 76664029 76664070 -44593460 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1169 232 292 0 0 chr12 76664516 76664564 -44592966 - B1F1 SINE Alu -100 49 2 3 1169 998 234 31 59 chr12 76665148 76665402 -44592128 + ORR1D2 LTR MaLR 1 247 -123 3 1169 2031 127 36 0 chr12 76665385 76665693 -44591837 - ORR1A2 LTR MaLR -8 319 1 3 1169 341 236 73 36 chr12 76665695 76665805 -44591725 + ORR1D2 LTR MaLR 242 355 -15 3 1169 1437 131 51 0 chr12 76665884 76666098 -44591432 + URR1B DNA MER1_type 1 225 0 3 1169 191 295 82 21 chr12 76667317 76667414 -44590116 - MIR SINE MIR -75 187 85 3 1169 383 292 13 75 chr12 76668214 76668237 -44589293 + ID_B1 SINE B4 75 184 -40 3 1169 530 271 8 8 chr12 76668237 76668367 -44589163 + B1F SINE Alu 13 142 -7 3 1169 645 164 100 0 chr12 76668908 76669018 -44588512 + Lx8 LINE L1 7043 7163 -310 3 1169 403 262 80 13 chr12 76669334 76669485 -44588045 + MLT1H LTR MaLR 382 542 -7 3 1169 474 218 17 129 chr12 76669823 76669939 -44587591 + B1F2 SINE Alu 6 108 -9 3 1169 188 35 35 0 chr12 76670027 76670056 -44587474 + (TTATA)n Simple_repeat Simple_repeat 2 31 0 3 1169 723 208 33 61 chr12 76670417 76670621 -44586909 - Lx3C LINE L1 -85 6915 6693 3 1169 1809 176 43 45 chr12 76670623 76670975 -44586555 + Lx4B LINE L1 6344 6694 -364 3 1169 238 267 129 32 chr12 76672001 76672094 -44585436 + B1F SINE Alu 40 141 -8 3 1169 600 255 101 10 chr12 76672104 76672302 -44585228 + B3 SINE B2 1 216 0 3 1169 869 228 22 6 chr12 76672548 76672729 -44584801 + B3 SINE B2 23 206 -10 3 1169 413 218 47 5 chr12 76672803 76672897 -44584633 + B1_Mur2 SINE Alu 8 101 -19 3 1169 23 68 0 0 chr12 76674633 76674677 -44582853 + AT_rich Low_complexity Low_complexity 1 44 0 3 1169 333 0 0 0 chr12 76674943 76674980 -44582550 + (GGGA)n Simple_repeat Simple_repeat 3 39 0 3 1169 662 205 0 8 chr12 76675744 76675872 -44581658 - B1_Mur1 SINE Alu -12 137 11 3 1169 1604 151 76 21 chr12 76676076 76676416 -44581114 + MTC LTR MaLR 8 400 0 3 1169 349 257 96 29 chr12 76676562 76676666 -44580864 + PB1D10 SINE Alu 7 117 0 3 1169 214 273 35 105 chr12 76676923 76677009 -44580521 + ID4 SINE ID 3 82 -1 3 146 293 47 0 23 chr12 76677100 76677144 -44580386 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1170 388 278 16 57 chr12 76677344 76677466 -44580064 + PB1D10 SINE Alu 1 117 0 3 1170 287 266 116 11 chr12 76677594 76677689 -44579841 + L2a LINE L2 3322 3426 0 3 1170 517 301 41 14 chr12 76677891 76678036 -44579494 + RSINE1 SINE B4 9 157 -8 3 1170 538 304 99 24 chr12 76678311 76678564 -44578966 - Lx8 LINE L1 -165 7308 7037 3 1170 1755 176 133 16 chr12 76678780 76679155 -44578375 - MTD LTR MaLR 0 419 1 3 1170 257 292 105 9 chr12 76679297 76679411 -44578119 + RSINE1 SINE B4 5 129 -36 3 1170 26 30 0 0 chr12 76679443 76679476 -44578054 + AT_rich Low_complexity Low_complexity 1 33 0 3 1170 400 220 109 0 chr12 76679565 76679673 -44577857 - B3A SINE B2 -75 120 3 3 1170 317 303 0 39 chr12 76679720 76679823 -44577707 - PB1D10 SINE Alu -14 103 5 3 1170 222 118 0 0 chr12 76679838 76679872 -44577658 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1170 548 171 128 0 chr12 76679882 76679999 -44577531 + Lx9 LINE L1 7290 7421 -223 3 1170 1127 82 0 0 chr12 76681310 76681456 -44576074 + B1_Mm SINE Alu 2 147 0 3 1170 207 0 0 0 chr12 76681456 76681479 -44576051 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1170 1255 41 0 0 chr12 76681568 76681715 -44575815 - B1_Mm SINE Alu 0 147 1 3 1170 814 230 64 39 chr12 76681976 76682180 -44575350 + B3 SINE B2 3 211 -5 3 1170 207 0 0 0 chr12 76682194 76682217 -44575313 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 1170 896 101 36 0 chr12 76682245 76682383 -44575147 - B1_Mus1 SINE Alu 0 148 6 3 1170 1179 55 0 0 chr12 76682507 76682653 -44574877 - B1_Mus2 SINE Alu 0 147 2 3 1170 819 144 0 0 chr12 76682934 76683059 -44574471 + B1_Mur4 SINE Alu 10 134 -16 3 1170 336 260 160 0 chr12 76683194 76683294 -44574236 + ID_B1 SINE B4 105 220 -4 3 1170 798 264 52 34 chr12 76684009 76684334 -44573196 + Tigger2b DNA MER2_type 1 331 -395 3 1170 239 259 136 37 chr12 76684335 76684443 -44573087 + PB1 SINE Alu 3 117 0 4 1170 1056 260 71 15 chr12 76684485 76684809 -44572721 + Tigger2b DNA MER2_type 323 664 -62 3 1170 694 238 49 16 chr12 76685968 76686139 -44571391 - B3 SINE B2 0 216 40 4 1170 711 190 0 47 chr12 76686148 76686297 -44571233 - B1_Mus2 SINE Alu -1 146 5 4 1170 313 317 49 16 chr12 76686188 76686310 -44571220 - B4 SINE B4 -88 204 79 4 1170 1257 48 0 0 chr12 76686329 76686476 -44571054 + B1_Mus1 SINE Alu 2 148 0 4 1170 570 291 49 49 chr12 76686862 76687046 -44570484 + B3A SINE B2 15 198 0 4 1170 656 282 6 0 chr12 76687421 76687584 -44569946 + RSINE1 SINE B4 2 165 0 4 1170 595 243 124 32 chr12 76688298 76688515 -44569015 + B4A SINE B4 1 237 -55 4 1170 987 216 38 19 chr12 76688557 76688769 -44568761 + B3 SINE B2 1 216 0 4 1170 328 191 16 0 chr12 76688782 76688845 -44568685 + ID4 SINE ID 1 64 -19 4 1170 378 0 0 0 chr12 76689121 76689163 -44568367 + (CAGGA)n Simple_repeat Simple_repeat 3 44 0 4 1170 449 200 53 71 chr12 76689278 76689391 -44568139 - PB1D7 SINE Alu 0 120 10 4 1170 216 200 0 0 chr12 76689443 76689488 -44568042 + (TAGG)n Simple_repeat Simple_repeat 4 48 0 4 1170 225 228 0 0 chr12 76689811 76689868 -44567662 + B3 SINE B2 158 214 -2 4 1170 231 36 0 0 chr12 76690531 76690559 -44566971 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1170 356 255 149 25 chr12 76690679 76690914 -44566616 + L1MB3 LINE L1 5499 5771 -529 4 1170 330 87 0 0 chr12 76690916 76690962 -44566568 + (TGAG)n Simple_repeat Simple_repeat 2 47 0 4 1170 1186 61 7 0 chr12 76691000 76691147 -44566383 + B1_Mus1 SINE Alu 1 148 0 4 1170 304 222 32 0 chr12 76691204 76691267 -44566263 + B1_Mur1 SINE Alu 78 142 -7 4 1170 316 233 136 0 chr12 76691397 76691500 -44566030 + L1MB3 LINE L1 6022 6138 -45 4 1170 1190 129 10 8 chr12 76691900 76692113 -44565417 - B2_Mm2 SINE B2 0 216 1 4 1170 217 159 134 60 chr12 76692171 76692238 -44565292 + PB1D9 SINE Alu 33 104 -16 4 1170 184 133 43 22 chr12 76692238 76692284 -44565246 + G-rich Low_complexity Low_complexity 6 52 0 4 1170 293 266 38 0 chr12 76692383 76692462 -44565068 - ID4 SINE ID -1 82 1 4 1170 303 339 53 63 chr12 76692513 76692702 -44564828 + B4A SINE B4 39 225 -67 4 1170 656 176 36 44 chr12 76692569 76692706 -44564824 + B1_Mus2 SINE Alu 12 147 0 4 1170 494 269 52 0 chr12 76692841 76692975 -44564555 + B1F2 SINE Alu 2 142 -7 4 1170 387 289 35 43 chr12 76693318 76693459 -44564071 + ID_B1 SINE B4 85 224 0 4 1170 566 285 15 0 chr12 76693720 76693850 -44563680 + RSINE1 SINE B4 3 134 -31 4 1170 183 42 0 0 chr12 76693863 76693887 -44563643 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1170 738 88 192 0 chr12 76694468 76694570 -44562960 + B1_Mur4 SINE Alu 2 126 -24 4 1170 222 37 0 0 chr12 76694570 76694597 -44562933 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1170 738 88 192 0 chr12 76694597 76694619 -44562911 + B1_Mur4 SINE Alu 127 149 -1 4 1170 212 236 199 61 chr12 76694907 76695038 -44562492 + B1F SINE Alu 1 149 0 4 1170 25 0 0 0 chr12 76696371 76696396 -44561134 + GC_rich Low_complexity Low_complexity 1 25 0 4 1170 25 31 0 0 chr12 76696684 76696716 -44560814 + GC_rich Low_complexity Low_complexity 1 32 0 4 1170 279 79 0 0 chr12 76696985 76697023 -44560507 + (CGG)n Simple_repeat Simple_repeat 1 38 0 4 1170 390 195 0 0 chr12 76698270 76698352 -44559178 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1170 630 273 45 120 chr12 76700458 76700749 -44556781 + B4A SINE B4 1 269 -23 4 1170 360 0 0 0 chr12 76700750 76700790 -44556740 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1170 309 268 10 0 chr12 76701448 76701545 -44555985 + PB1D10 SINE Alu 4 101 -16 4 1170 596 258 62 54 chr12 76701645 76701903 -44555627 + Lx8 LINE L1 7214 7473 0 4 1170 275 326 72 39 chr12 76702077 76702383 -44555147 + Lx8 LINE L1 7142 7457 -16 4 1170 1167 75 0 0 chr12 76702441 76702587 -44554943 + B1_Mus2 SINE Alu 2 147 0 4 1170 690 258 37 107 chr12 76702916 76703159 -44554371 - RMER15 LTR ERVL -75 500 275 4 1170 606 150 26 9 chr12 76704159 76704273 -44553257 + B2_Mm2 SINE B2 1 116 -79 4 1170 238 327 37 28 chr12 76704261 76704368 -44553162 + RSINE1 SINE B4 58 165 0 4 1170 559 162 162 0 chr12 76704431 76704548 -44552982 - B1_Mur2 SINE Alu -5 144 9 4 1170 311 256 119 8 chr12 76704548 76704562 -44552968 - B4A SINE B4 -67 222 77 4 1170 1919 113 0 65 chr12 76704934 76705274 -44552256 + ORR1A3 LTR MaLR 1 318 -8 4 1170 703 185 44 50 chr12 76705938 76706097 -44551433 + RSINE1 SINE B4 5 162 -3 4 1170 272 229 0 0 chr12 76706099 76706160 -44551370 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1170 1200 55 0 0 chr12 76706543 76706688 -44550842 + B1_Mm SINE Alu 3 147 0 4 1170 846 104 102 22 chr12 76707067 76707204 -44550326 - B1_Mus1 SINE Alu 0 148 1 4 1170 228 331 123 0 chr12 76708505 76708668 -44548862 + L1M5 LINE L1 5693 5875 -249 4 1170 257 113 0 88 chr12 76708894 76708962 -44548568 + T-rich Low_complexity Low_complexity 2 63 0 4 1170 2417 97 64 19 chr12 76709192 76709569 -44547961 + ORR1B1 LTR MaLR 1 394 0 4 1170 448 267 8 8 chr12 76709607 76709728 -44547802 - B3 SINE B2 -95 121 1 4 1170 590 168 77 122 chr12 76709781 76709937 -44547593 - B1_Mur4 SINE Alu 0 150 2 4 1170 1113 113 54 5 chr12 76709961 76710147 -44547383 - B2_Mm2 SINE B2 0 195 1 4 1170 619 272 41 0 chr12 76710483 76710652 -44546878 - B3A SINE B2 -18 180 5 4 1170 483 87 0 0 chr12 76710687 76710756 -44546774 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1170 21 0 0 0 chr12 76710814 76710835 -44546695 + AT_rich Low_complexity Low_complexity 1 21 0 4 1170 1256 34 0 0 chr12 76710927 76711074 -44546456 + B1_Mus2 SINE Alu 1 147 0 4 1170 1656 220 85 8 chr12 76711619 76712008 -44545522 - MTD LTR MaLR 0 419 1 4 1170 522 92 0 13 chr12 76712449 76712526 -44545004 + B3 SINE B2 4 79 -137 4 1170 262 146 55 0 chr12 76712512 76712567 -44544963 - ID SINE ID -165 59 2 4 1170 248 346 51 0 chr12 76712627 76712705 -44544825 + ID4_ SINE ID 2 83 0 4 1170 343 302 28 9 chr12 76712746 76712853 -44544677 - ID_B1 SINE B4 -4 220 112 4 1170 349 235 199 21 chr12 76712911 76713102 -44544428 - L1MB2 LINE L1 -135 6048 5824 4 1170 285 300 43 43 chr12 76713117 76713232 -44544298 - PB1 SINE Alu 0 127 13 4 1170 947 232 4 55 chr12 76713232 76713487 -44544043 - L1MB2 LINE L1 -343 5828 5587 4 1170 838 202 143 5 chr12 76714408 76714597 -44542933 + B3 SINE B2 2 216 0 4 1170 1115 82 7 0 chr12 76714617 76714763 -44542767 + B1_Mus1 SINE Alu 2 148 0 4 1170 194 81 27 0 chr12 76714767 76714804 -44542726 + (TAAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1170 1209 91 36 31 chr12 76714835 76715028 -44542502 + B2_Mm2 SINE B2 2 195 0 4 1170 870 62 0 0 chr12 76715120 76715233 -44542297 + (TG)n Simple_repeat Simple_repeat 1 113 0 4 1170 970 260 41 41 chr12 76715241 76715510 -44542020 - B4A SINE B4 -22 270 2 4 1170 243 250 0 0 chr12 76715678 76715738 -44541792 - PB1D9 SINE Alu 0 120 61 4 1170 1016 64 77 0 chr12 76715762 76715918 -44541612 - B2_Mm2 SINE B2 -1 194 27 4 1170 776 235 92 0 chr12 76716617 76716813 -44540717 + B4A SINE B4 2 215 -77 4 1170 421 132 12 24 chr12 76716813 76716898 -44540632 + CT-rich Low_complexity Low_complexity 1 84 0 4 1170 405 0 0 0 chr12 76716923 76716968 -44540562 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1170 275 167 21 0 chr12 76717421 76717469 -44540061 + MT2A LTR ERVL 334 382 -151 4 1170 1565 42 5 20 chr12 76717630 76717826 -44539704 + B2_Mm1a SINE B2 1 193 0 4 1170 281 192 19 0 chr12 76718196 76718248 -44539282 + RSINE1 SINE B4 36 88 -77 4 1170 635 170 62 0 chr12 76718403 76718515 -44539015 - B3 SINE B2 -97 119 1 4 1170 502 196 62 0 chr12 76718632 76718761 -44538769 - B1F SINE Alu -1 147 5 4 1170 707 139 0 25 chr12 76718967 76719085 -44538445 + B1_Mur3 SINE Alu 34 148 -1 4 1170 426 108 0 0 chr12 76719108 76719173 -44538357 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1170 313 229 0 67 chr12 76719635 76719724 -44537806 - PB1D10 SINE Alu 0 117 35 4 1170 8620 60 1 3 chr12 76719906 76721036 -44536494 + L1_Mus4 LINE L1 5510 6636 0 4 1170 600 311 22 13 chr12 76721108 76721333 -44536197 + MLT2B3 LTR ERVL 1 227 -327 4 1170 317 296 0 0 chr12 76721342 76721423 -44536107 + CT-rich Low_complexity Low_complexity 5 85 0 4 1170 333 293 34 48 chr12 76721424 76721571 -44535959 + MLT2B3 LTR ERVL 223 367 -187 4 1170 618 177 0 0 chr12 76721571 76721695 -44535835 + (CA)n Simple_repeat Simple_repeat 2 125 0 4 1170 182 150 25 0 chr12 76721805 76721845 -44535685 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 4 1170 481 301 17 78 chr12 76721870 76721950 -44535580 - B3A SINE B2 -16 182 103 4 1170 6606 112 84 10 chr12 76721950 76722987 -44534543 + RLTR13D3 LTR ERVK 1 1114 0 4 1170 481 301 17 78 chr12 76722987 76723086 -44534444 - B3A SINE B2 -96 102 14 4 1170 1596 206 78 47 chr12 76723126 76723590 -44533940 + RLTR28B LTR ERVL 1 478 -3 4 1170 488 230 84 3 chr12 76723590 76723706 -44533824 - B1_Mur4 SINE Alu -26 124 2 4 1170 713 70 0 10 chr12 76724174 76724275 -44533255 + (TCC)n Simple_repeat Simple_repeat 3 102 0 4 1170 935 267 53 29 chr12 76724557 76724634 -44532896 - B4A SINE B4 -2 290 212 4 1170 1120 254 57 60 chr12 76724634 76725003 -44532527 + ORR1D2 LTR MaLR 1 368 -2 4 1170 935 267 53 29 chr12 76725003 76725206 -44532324 - B4A SINE B4 -81 211 3 4 1170 378 107 0 0 chr12 76725221 76725277 -44532253 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 5 1170 207 0 0 0 chr12 76725279 76725302 -44532228 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1170 491 301 82 7 chr12 76725303 76725450 -44532080 - RSINE1 SINE B4 -4 161 4 5 1170 643 135 144 2 chr12 76725461 76725608 -44531922 - L1MA6 LINE L1 -4 6293 6128 5 1170 977 156 248 38 chr12 76725993 76726312 -44531218 + ORR1B1 LTR MaLR 1 386 -8 5 1170 238 348 0 0 chr12 76726320 76726389 -44531141 + B4A SINE B4 101 169 -123 5 1170 219 262 150 0 chr12 76726322 76726402 -44531128 + PB1D7 SINE Alu 18 109 -11 5 1170 924 262 9 5 chr12 76726482 76726704 -44530826 + ID_B1 SINE B4 1 223 -1 5 1170 932 184 58 29 chr12 76726909 76727116 -44530414 + B3 SINE B2 1 213 -3 5 1170 443 228 123 23 chr12 76727345 76727475 -44530055 + B1F2 SINE Alu 6 148 -1 5 1170 635 204 0 0 chr12 76727489 76727597 -44529933 + RSINE1 SINE B4 11 118 -47 5 1170 453 19 0 0 chr12 76727599 76727653 -44529877 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1170 280 230 149 9 chr12 76727781 76727895 -44529635 - L1M5 LINE L1 -616 5578 5449 5 1170 1216 75 0 0 chr12 76727898 76728045 -44529485 + B1_Mus2 SINE Alu 1 147 0 5 1170 614 129 30 0 chr12 76728076 76728177 -44529353 + B1_Mur2 SINE Alu 40 143 -6 5 1170 234 0 0 0 chr12 76728178 76728204 -44529326 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1170 824 230 13 7 chr12 76728233 76728446 -44529084 - B3A SINE B2 -1 215 2 5 1170 479 256 8 0 chr12 76728453 76728570 -44528960 - PB1D9 SINE Alu -1 119 2 5 1170 720 174 78 21 chr12 76728750 76728891 -44528639 - B1_Mur4 SINE Alu 0 150 2 5 1170 521 153 92 0 chr12 76728913 76729011 -44528519 - B1_Mur3 SINE Alu -1 148 42 5 1170 599 133 39 70 chr12 76729103 76729232 -44528298 - B1_Mur3 SINE Alu 0 149 25 5 1170 327 282 103 0 chr12 76729219 76729336 -44528194 - RSINE1 SINE B4 -35 130 2 5 1170 1075 216 0 5 chr12 76729352 76729561 -44527969 - B3 SINE B2 -8 208 1 5 1170 846 36 9 0 chr12 76729585 76729696 -44527834 - B2_Mm2 SINE B2 -82 113 2 5 1170 317 287 143 42 chr12 76729795 76730082 -44527448 - L1MA7 LINE L1 -216 6075 5760 5 1170 1500 54 16 0 chr12 76730263 76730449 -44527081 - B2_Mm2 SINE B2 -5 190 2 5 1170 354 155 0 224 chr12 76730661 76730714 -44526816 + ORR1C1 LTR MaLR 270 321 -57 5 1170 880 137 84 22 chr12 76730714 76730893 -44526637 + B2_Mm2 SINE B2 1 190 -5 5 1170 354 155 0 224 chr12 76730893 76730964 -44526566 + ORR1C1 LTR MaLR 322 366 -12 5 1170 361 232 50 0 chr12 76731177 76731276 -44526254 + MTEb LTR MaLR 33 136 -243 5 1170 237 332 70 45 chr12 76731179 76731378 -44526152 + MT2A LTR ERVL 35 238 -295 5 1170 30 0 0 0 chr12 76731444 76731474 -44526056 + AT_rich Low_complexity Low_complexity 1 30 0 5 1170 498 17 0 0 chr12 76731736 76731795 -44525735 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1170 217 276 0 0 chr12 76732033 76732109 -44525421 + (CAG)n Simple_repeat Simple_repeat 3 78 0 5 1170 1520 37 26 11 chr12 76732368 76732558 -44524972 - B2_Mm1a SINE B2 0 193 1 5 1170 1795 150 144 39 chr12 76734823 76735183 -44522347 - RMER10B LTR ERVL 0 398 1 5 1170 687 196 13 45 chr12 76735329 76735484 -44522046 - B1_Mur4 SINE Alu 0 150 1 5 1170 586 258 7 127 chr12 76735646 76735888 -44521642 + MLT1E2 LTR MaLR 6 296 -357 5 1170 1452 184 143 37 chr12 76735941 76736318 -44521212 + MTD LTR MaLR 2 418 -1 5 1170 434 267 48 48 chr12 76736318 76736434 -44521096 + B3A SINE B2 43 160 -38 5 1170 405 129 0 0 chr12 76736445 76736515 -44521015 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1170 253 322 11 11 chr12 76736720 76736808 -44520722 - MIR SINE MIR -179 89 2 5 1170 404 295 68 8 chr12 76736869 76737002 -44520528 - ID_B1 SINE B4 -4 220 80 5 1170 463 272 35 0 chr12 76737778 76737892 -44519638 + ID_B1 SINE B4 18 135 -89 5 1170 218 227 152 0 chr12 76737914 76737980 -44519550 + ID4 SINE ID 8 83 0 5 1170 204 213 0 0 chr12 76738460 76738507 -44519023 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 5 1170 542 242 17 0 chr12 76738625 76738745 -44518785 + ID_B1 SINE B4 101 222 -2 5 1170 215 319 0 0 chr12 76738747 76738816 -44518714 + GA-rich Low_complexity Low_complexity 2 70 0 5 1170 3802 243 89 13 chr12 76739219 76740224 -44517306 + Lx7 LINE L1 6175 7255 -441 5 1170 342 67 0 0 chr12 76740224 76740269 -44517261 + (TTA)n Simple_repeat Simple_repeat 2 46 0 5 1170 782 151 16 0 chr12 76740270 76740396 -44517134 - B1_Mur3 SINE Alu -4 145 18 5 1170 228 274 0 31 chr12 76740409 76740507 -44517023 + T-rich Low_complexity Low_complexity 4 98 0 5 1170 602 250 23 0 chr12 76740759 76740887 -44516643 + B3 SINE B2 1 131 -85 5 1170 319 304 75 103 chr12 76741229 76741482 -44516048 - RLTR18 LTR ERVK -346 270 25 5 1170 231 146 0 0 chr12 76742047 76742088 -44515442 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1170 506 304 14 0 chr12 76742089 76742227 -44515303 - ID_B1 SINE B4 -4 220 81 5 1170 583 257 76 76 chr12 76742400 76742598 -44514932 - B3A SINE B2 0 198 1 5 1170 1416 66 16 11 chr12 76742617 76742802 -44514728 + B2_Mm2 SINE B2 2 187 -8 5 1170 240 35 0 0 chr12 76742821 76742850 -44514680 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1170 767 255 21 16 chr12 76742850 76743037 -44514493 - B3 SINE B2 -28 188 1 5 1170 648 260 143 0 chr12 76743184 76743380 -44514150 - ID_B1 SINE B4 0 224 1 5 1170 1260 27 0 0 chr12 76743413 76743560 -44513970 + B1_Mus2 SINE Alu 1 147 0 5 1170 256 314 41 33 chr12 76743591 76743713 -44513817 + B1_Mur3 SINE Alu 1 123 -26 5 1170 297 183 0 0 chr12 76743729 76743789 -44513741 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 5 1170 260 300 79 35 chr12 76744271 76744385 -44513145 - B1F SINE Alu -11 138 20 5 1170 186 43 0 0 chr12 76744610 76744633 -44512897 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1170 531 293 27 77 chr12 76745609 76745831 -44511699 + B4 SINE B4 81 291 -1 5 1170 703 237 35 25 chr12 76745922 76746125 -44511405 + ID_B1 SINE B4 20 224 0 5 1170 371 265 10 10 chr12 76746170 76746273 -44511257 + PB1D10 SINE Alu 9 111 -6 5 1170 224 193 250 17 chr12 76746273 76746286 -44511244 + B4A SINE B4 94 236 -56 5 1170 350 250 9 65 chr12 76746449 76746556 -44510974 - ID_B1 SINE B4 -34 190 90 5 1170 252 0 0 0 chr12 76746672 76746700 -44510830 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1170 317 264 107 18 chr12 76746732 76746844 -44510686 - B4A SINE B4 -5 287 166 5 1170 932 60 90 0 chr12 76746872 76747005 -44510525 + B2_Mm2 SINE B2 2 146 -49 5 1170 301 263 86 78 chr12 76747706 76747834 -44509696 + B3A SINE B2 51 179 -19 5 1170 572 214 40 0 chr12 76747980 76748106 -44509424 - B1_Mus2 SINE Alu -12 135 5 5 1170 1133 87 85 23 chr12 76748741 76748918 -44508612 + B2_Mm2 SINE B2 2 189 -6 5 1170 423 273 0 0 chr12 76748947 76749046 -44508484 + PB1 SINE Alu 9 107 -20 5 1170 220 258 48 76 chr12 76749529 76749634 -44507896 + B1F SINE Alu 48 149 0 5 1170 328 288 70 28 chr12 76749794 76749937 -44507593 + B1F2 SINE Alu 1 149 0 5 1170 315 0 0 0 chr12 76750224 76750259 -44507271 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1170 428 340 30 0 chr12 76750348 76750545 -44506985 + L1MCc LINE L1 980 1182 -5241 5 1170 370 227 80 126 chr12 76750646 76750733 -44506797 + ID_B1 SINE B4 81 159 -65 5 1170 1175 216 133 30 chr12 76750733 76751071 -44506459 - ORR1D1 LTR MaLR 0 374 2 5 1170 370 227 80 126 chr12 76751071 76751134 -44506396 + ID_B1 SINE B4 160 224 0 5 1170 338 256 33 0 chr12 76751205 76751233 -44506297 + ID SINE ID 54 84 -140 5 1170 248 230 68 0 chr12 76751233 76751307 -44506223 + PB1D10 SINE Alu 1 79 -38 5 1170 1058 129 156 9 chr12 76751308 76751323 -44506207 + L1_Mur3 LINE L1 546 559 -7169 5 1170 2046 127 15 41 chr12 76751323 76751661 -44505869 + ORR1A4 LTR MaLR 1 329 0 5 1170 1058 129 156 9 chr12 76751661 76751857 -44505673 + L1_Mur3 LINE L1 560 788 -6940 5 1170 1731 152 88 9 chr12 76751857 76752188 -44505342 - ORR1B2 LTR MaLR -5 362 6 5 1170 532 169 51 61 chr12 76752197 76752297 -44505233 + L1_Mur3 LINE L1 795 893 -6835 5 1170 1149 44 0 0 chr12 76752297 76752433 -44505097 + B1_Mus2 SINE Alu 1 136 -11 5 1170 396 0 0 0 chr12 76752433 76752477 -44505053 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1170 565 159 104 51 chr12 76752477 76752692 -44504838 + L1_Mur3 LINE L1 888 1067 -6661 5 1170 856 133 40 0 chr12 76752692 76752842 -44504688 - RMER4B LTR ERVK -29 556 401 5 1170 1438 120 4 32 chr12 76752845 76753094 -44504436 + L1_Mur3 LINE L1 1660 1901 -3979 5 1170 6179 207 88 12 chr12 76753088 76754134 -44503396 + Lx7 LINE L1 5488 6635 -1061 5 1170 1224 228 212 45 chr12 76754134 76754648 -44502882 - MT2B LTR ERVL 0 601 2 5 1170 6179 217 90 23 chr12 76754648 76755412 -44502118 + Lx7 LINE L1 6625 7447 -13 5 1170 370 212 24 0 chr12 76755412 76755497 -44502033 + ID_B1 SINE B4 129 215 -9 5 1170 236 357 13 40 chr12 76755514 76755663 -44501867 + RSINE1 SINE B4 2 146 -19 5 1170 1464 49 16 5 chr12 76755880 76756065 -44501465 + B2_Mm1a SINE B2 1 187 -6 5 1170 1293 47 18 0 chr12 76756101 76756271 -44501259 + B2_Mm2 SINE B2 1 173 -22 5 1170 321 26 0 0 chr12 76756272 76756310 -44501220 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 5 1170 932 252 15 0 chr12 76756357 76756563 -44500967 + B3 SINE B2 1 209 -7 5 1170 711 172 41 0 chr12 76756583 76756705 -44500825 + B3 SINE B2 5 131 -85 5 1170 683 155 7 60 chr12 76756701 76756852 -44500678 - MTD LTR MaLR -276 143 1 6 1170 807 213 58 37 chr12 76757251 76757441 -44500089 + B3A SINE B2 3 196 -2 6 1170 855 174 189 0 chr12 76758027 76758217 -44499313 + URR1A DNA MER1_type 1 226 0 6 1170 549 219 0 0 chr12 76758508 76758613 -44498917 - B1_Mur3 SINE Alu -44 105 1 6 1170 566 236 32 65 chr12 76759053 76759207 -44498323 - B1F1 SINE Alu 0 149 1 6 1170 189 0 0 0 chr12 76759391 76759412 -44498118 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1170 1043 178 173 0 chr12 76759529 76759818 -44497712 - MTC LTR MaLR 0 421 83 6 1170 288 77 0 0 chr12 76759818 76759857 -44497673 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1170 896 25 0 0 chr12 76759857 76759976 -44497554 - B1_Mm SINE Alu 0 147 29 6 1170 297 218 26 0 chr12 76759973 76760051 -44497479 - MTC LTR MaLR -341 80 1 6 1170 418 226 98 0 chr12 76761353 76761455 -44496075 - PB1D7 SINE Alu -6 114 3 6 1170 210 273 100 22 chr12 76761527 76761617 -44495913 + B1F SINE Alu 42 138 -11 6 1170 23 0 0 0 chr12 76761685 76761708 -44495822 + AT_rich Low_complexity Low_complexity 1 23 0 6 1170 499 202 53 0 chr12 76761873 76761987 -44495543 - B1_Mm SINE Alu -23 124 5 6 1170 1226 41 0 7 chr12 76762010 76762157 -44495373 - B1_Mus2 SINE Alu 0 147 2 6 1170 372 268 87 26 chr12 76762543 76762658 -44494872 + B1F1 SINE Alu 1 122 -25 6 1170 1436 78 15 15 chr12 76762875 76763070 -44494460 - B2_Mm2 SINE B2 0 195 1 6 1170 610 171 0 0 chr12 76763071 76763176 -44494354 + B1_Mur3 SINE Alu 11 115 -34 6 1170 286 55 73 0 chr12 76763189 76763244 -44494286 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 6 1170 454 245 18 35 chr12 76763244 76763358 -44494172 + RSINE1 SINE B4 11 122 -43 6 1170 224 263 61 40 chr12 76763505 76763604 -44493926 - MIR SINE MIR -58 204 104 6 1170 1263 108 11 0 chr12 76763618 76763794 -44493736 + B2_Mm1t SINE B2 2 179 -14 6 1170 325 160 20 0 chr12 76763840 76763913 -44493617 + B2_Mm2 SINE B2 46 124 -74 6 1170 496 245 33 47 chr12 76764037 76764187 -44493343 - B1F2 SINE Alu 0 149 2 6 1170 186 118 0 0 chr12 76764341 76764375 -44493155 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1170 450 235 31 0 chr12 76764873 76764971 -44492559 + PB1D10 SINE Alu 7 107 -10 6 1170 551 183 17 25 chr12 76764985 76765103 -44492427 + ID_B1 SINE B4 1 117 -107 6 1170 204 40 0 0 chr12 76765220 76765245 -44492285 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1170 257 215 14 71 chr12 76765528 76765598 -44491932 + RMER10A LTR ERVL 18 83 -359 6 1170 338 331 0 30 chr12 76765786 76765917 -44491613 + MLT1J2 LTR MaLR 90 216 -232 6 1170 1192 75 6 11 chr12 76766075 76766250 -44491280 + B2_Mm2 SINE B2 2 175 -20 6 1170 367 242 30 10 chr12 76766410 76766510 -44491020 - ID_B1 SINE B4 -2 222 121 6 1170 216 0 0 0 chr12 76767065 76767089 -44490441 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1170 329 311 39 0 chr12 76767275 76767378 -44490152 + PB1D7 SINE Alu 14 120 0 6 1170 265 276 11 0 chr12 76767399 76767486 -44490044 + MLT1J2 LTR MaLR 307 394 -111 6 1170 509 268 26 19 chr12 76767532 76767688 -44489842 - B3A SINE B2 -16 182 26 6 1170 695 182 7 29 chr12 76767696 76767832 -44489698 - B1_Mur2 SINE Alu -12 137 5 6 1170 226 176 0 105 chr12 76767891 76767948 -44489582 + MLT1J2 LTR MaLR 453 503 -2 6 1170 398 246 104 9 chr12 76767985 76768100 -44489430 + B1F SINE Alu 21 146 -3 6 1170 360 212 34 34 chr12 76768122 76768210 -44489320 + RSINE1 SINE B4 53 140 -25 6 1170 297 68 0 0 chr12 76768214 76768258 -44489272 + (TCTCTG)n Simple_repeat Simple_repeat 3 46 0 6 1170 252 0 0 0 chr12 76768258 76768285 -44489245 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1170 892 41 8 0 chr12 76768529 76768650 -44488880 + B1_Mm SINE Alu 26 147 0 6 1170 597 201 109 22 chr12 76768678 76768815 -44488715 + B1_Mur1 SINE Alu 1 149 0 6 1170 456 241 63 0 chr12 76768888 76769015 -44488515 + B1_Mus1 SINE Alu 8 143 -7 6 1170 197 0 0 67 chr12 76769020 76769050 -44488480 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 6 1170 1299 27 0 0 chr12 76769564 76769712 -44487818 - B1_Mus1 SINE Alu 0 148 1 6 1170 198 0 0 0 chr12 76769898 76769920 -44487610 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1170 313 286 0 62 chr12 76769923 76770035 -44487495 - PB1D9 SINE Alu -14 106 2 6 1170 291 372 9 13 chr12 76771438 76771664 -44485866 - RLTR14-int LTR ERV1 -605 4712 4488 6 1170 250 214 57 0 chr12 76772435 76772505 -44485025 - RLTR14-int LTR ERV1 -1665 3652 3579 6 1170 334 329 123 27 chr12 76773243 76773577 -44483953 - RLTR6-int LTR ERV1 -3211 4567 4202 6 1170 890 118 44 7 chr12 76773615 76773752 -44483778 + B1_Mur4 SINE Alu 1 142 -8 6 1170 382 304 36 44 chr12 76773839 76774090 -44483440 - RLTR14-int LTR ERV1 -2928 2389 2141 6 1170 448 285 18 79 chr12 76774163 76774327 -44483203 - RLTR14-int LTR ERV1 -5163 154 1 6 1170 1866 142 87 0 chr12 76774334 76774680 -44482850 - RLTR14 LTR ERV1 -6 376 1 6 1170 226 248 113 90 chr12 76774863 76774996 -44482534 + B1F1 SINE Alu 3 138 -11 6 1170 250 308 137 0 chr12 76775351 76775468 -44482062 + B1F1 SINE Alu 15 147 -2 6 1170 1777 110 18 3 chr12 76775769 76776052 -44481478 + Lx2A1 LINE L1 6722 7008 0 6 1170 1537 206 102 3 chr12 76776076 76776447 -44481083 - MTD LTR MaLR 0 419 12 6 1170 2053 129 130 11 chr12 76776590 76776966 -44480564 + MTC LTR MaLR 1 421 0 6 1170 505 138 0 11 chr12 76777002 76777090 -44480440 - ORR1D2 LTR MaLR 0 370 284 6 1170 705 126 38 95 chr12 76777176 76777334 -44480196 + B1_Mur3 SINE Alu 1 149 0 6 1170 382 265 10 10 chr12 76777414 76777513 -44480017 + PB1D10 SINE Alu 1 99 -18 6 1170 292 279 15 0 chr12 76777709 76777777 -44479753 + PB1D7 SINE Alu 12 80 -40 6 1170 360 0 0 0 chr12 76777849 76777889 -44479641 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1170 828 266 36 66 chr12 76777891 76778165 -44479365 - B4 SINE B4 -26 266 1 6 1170 374 196 47 132 chr12 76778287 76778331 -44479199 + PB1D9 SINE Alu 2 46 -74 6 1170 741 226 0 27 chr12 76778331 76778481 -44479049 + B1_Mus2 SINE Alu 2 147 0 6 1170 374 196 47 132 chr12 76778481 76778565 -44478965 + PB1D9 SINE Alu 47 119 -1 6 1170 1236 54 0 0 chr12 76778588 76778735 -44478795 + B1_Mm SINE Alu 1 147 0 6 1170 551 263 29 29 chr12 76778812 76778949 -44478581 + RSINE1 SINE B4 10 146 -19 6 1170 776 238 19 77 chr12 76778993 76779202 -44478328 - B3A SINE B2 -1 197 1 6 1170 261 0 0 0 chr12 76779317 76779346 -44478184 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1170 296 335 0 0 chr12 76779353 76779459 -44478071 - B1_Mur2 SINE Alu -37 112 7 6 1170 691 230 59 24 chr12 76779490 76779659 -44477871 + B3 SINE B2 4 178 -38 6 1170 248 96 39 0 chr12 76779717 76779769 -44477761 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 6 1170 423 248 80 29 chr12 76779860 76779872 -44477658 + B1F SINE Alu 6 72 -77 6 1170 519 246 0 0 chr12 76779872 76779986 -44477544 + ID_B1 SINE B4 103 216 -8 6 1170 423 248 80 29 chr12 76779986 76779997 -44477533 + B1F SINE Alu 73 149 0 6 1170 310 114 313 17 chr12 76780088 76780203 -44477327 - B2_Mm2 SINE B2 0 195 47 6 1170 947 77 35 14 chr12 76780238 76780383 -44477147 - B2_Mm1t SINE B2 -26 167 20 6 1170 793 119 90 0 chr12 76780414 76780548 -44476982 - B1_Mus1 SINE Alu 0 148 3 6 1170 1507 186 106 32 chr12 76780804 76781181 -44476349 + MTD LTR MaLR 1 405 -14 6 1170 255 274 136 10 chr12 76781279 76781382 -44476148 + B3A SINE B2 6 121 -77 6 1170 1080 23 31 0 chr12 76781798 76781927 -44475603 + B1_Mus1 SINE Alu 1 133 -15 6 1170 275 271 0 0 chr12 76782061 76782120 -44475410 + B3A SINE B2 104 162 -36 6 1170 232 160 177 51 chr12 76782452 76782531 -44474999 + Lx8 LINE L1 7384 7472 -1 6 1170 206 105 26 0 chr12 76782883 76782921 -44474609 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 6 1170 1209 61 0 0 chr12 76782969 76783116 -44474414 + B1_Mus1 SINE Alu 2 148 0 6 1170 493 207 54 9 chr12 76783142 76783254 -44474276 + B3A SINE B2 2 118 -80 6 1170 180 0 0 0 chr12 76783266 76783286 -44474244 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1170 896 118 28 7 chr12 76783313 76783458 -44474072 + B1_Mus1 SINE Alu 1 148 0 6 1170 295 232 0 55 chr12 76783526 76783599 -44473931 + RSINE1 SINE B4 84 152 -13 6 1170 482 188 222 0 chr12 76783707 76783824 -44473706 + B1_Mur2 SINE Alu 2 144 -5 6 1170 353 203 0 0 chr12 76783835 76783904 -44473626 + ID_B1 SINE B4 152 220 -4 6 1170 238 146 20 40 chr12 76783956 76783994 -44473536 + B1F SINE Alu 78 114 -35 6 1170 311 254 0 15 chr12 76783994 76784062 -44473468 + B1F SINE Alu 4 70 -79 6 1170 1279 123 0 150 chr12 76784067 76784374 -44473156 - ORR1A4 LTR MaLR -68 261 1 6 1170 476 322 0 27 chr12 76784374 76784522 -44473008 + RSINE1 SINE B4 22 165 0 6 1170 22 80 0 0 chr12 76784539 76784589 -44472941 + AT_rich Low_complexity Low_complexity 1 50 0 6 1170 4696 67 40 3 chr12 76785025 76785631 -44471899 + L1_Mus2 LINE L1 5915 6545 -21 6 1170 1237 34 0 20 chr12 76785631 76785781 -44471749 + B1_Mm SINE Alu 1 147 0 6 1170 4696 67 40 3 chr12 76785781 76785792 -44471738 + L1_Mus2 LINE L1 6546 6555 -11 6 1170 1726 116 14 14 chr12 76785862 76786143 -44471387 - ORR1A3 LTR MaLR -45 281 1 6 1170 307 180 0 0 chr12 76786165 76786215 -44471315 - B1_Mur4 SINE Alu -88 62 13 6 1170 251 299 0 29 chr12 76786215 76786233 -44471297 - B4 SINE B4 -145 146 81 6 1170 312 297 16 98 chr12 76786227 76786247 -44471283 - B2_Mm2 SINE B2 -1 194 178 6 1170 658 172 86 36 chr12 76786247 76786386 -44471144 - B1_Mus2 SINE Alu -1 146 1 6 1170 494 264 118 25 chr12 76786386 76786548 -44470982 - B3A SINE B2 -4 194 27 6 1170 1126 101 0 0 chr12 76786548 76786696 -44470834 - B1_Mus1 SINE Alu 0 148 1 6 1170 1275 91 5 51 chr12 76786720 76786917 -44470613 - B2_Mm2 SINE B2 -6 189 2 6 1170 345 162 0 0 chr12 76786991 76787059 -44470471 + (CCTA)n Simple_repeat Simple_repeat 1 68 0 7 1170 715 210 28 7 chr12 76787063 76787207 -44470323 - B1_Mus2 SINE Alu 0 147 1 7 1170 951 177 11 37 chr12 76787207 76787394 -44470136 - B2_Mm2 SINE B2 -12 183 1 7 1170 303 287 10 31 chr12 76787479 76787576 -44469954 - PB1D10 SINE Alu -1 116 22 7 1170 308 241 30 12 chr12 76788280 76788366 -44469164 + ID4_ SINE ID 4 93 -59 7 1170 333 243 63 5 chr12 76788584 76788689 -44468841 - PB1D9 SINE Alu -40 107 2 7 1170 4602 105 16 10 chr12 76788833 76789506 -44468024 + Lx2 LINE L1 5972 6648 -349 7 1170 1391 118 27 0 chr12 76789492 76789713 -44467817 + Lx2 LINE L1 6765 6991 -6 7 1170 256 193 70 0 chr12 76789791 76789848 -44467682 - B1F SINE Alu -33 116 56 7 1170 1646 179 83 60 chr12 76789896 76790281 -44467249 - ORR1B1 LTR MaLR 0 394 1 7 1170 651 236 0 7 chr12 76790309 76790458 -44467072 + B1_Mur2 SINE Alu 2 149 0 7 1170 718 240 11 69 chr12 76790470 76790654 -44466876 + B3 SINE B2 6 178 -38 7 1170 1944 81 75 30 chr12 76790654 76790913 -44466617 + ORR1A2 LTR MaLR 1 282 -45 7 1170 1466 74 16 0 chr12 76790913 76791103 -44466427 + B2_Mm2 SINE B2 2 194 -1 7 1170 1944 81 75 30 chr12 76791103 76791148 -44466382 + ORR1A2 LTR MaLR 283 319 -8 7 1170 738 263 128 8 chr12 76791208 76791465 -44466065 - B4 SINE B4 -4 288 1 7 1170 365 258 171 8 chr12 76791744 76791873 -44465657 + MTEb LTR MaLR 34 183 -196 7 1170 413 80 66 13 chr12 76791869 76791945 -44465585 + PB1D9 SINE Alu 41 120 0 7 1170 463 233 50 145 chr12 76791945 76792186 -44465344 + MTEb LTR MaLR 162 379 0 7 1170 375 296 45 18 chr12 76792284 76792394 -44465136 + ID_B1 SINE B4 80 192 -32 7 1170 222 37 0 0 chr12 76792395 76792422 -44465108 + (TA)n Simple_repeat Simple_repeat 1 27 0 7 1170 318 26 0 0 chr12 76792486 76792525 -44465005 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1170 212 0 0 35 chr12 76792563 76792592 -44464938 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1170 27 0 0 0 chr12 76792602 76792629 -44464901 + AT_rich Low_complexity Low_complexity 1 27 0 7 1170 885 232 5 25 chr12 76792688 76792711 -44464819 - B3 SINE B2 -21 195 173 7 1170 2935 76 14 51 chr12 76792711 76792901 -44464629 + MTB LTR MaLR 1 191 -209 7 1170 1217 54 0 0 chr12 76792901 76793048 -44464482 + B1_Mus2 SINE Alu 1 147 0 7 1170 2935 76 14 51 chr12 76793048 76793272 -44464258 + MTB LTR MaLR 192 400 0 7 1170 885 232 5 25 chr12 76793272 76793447 -44464083 - B3 SINE B2 -44 172 1 7 1170 390 74 0 0 chr12 76793471 76793525 -44464005 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 7 1170 331 273 75 8 chr12 76793596 76793729 -44463801 - LTR16A1 LTR ERVL 0 456 315 7 1170 1984 150 27 98 chr12 76793744 76794151 -44463379 - ORR1C1 LTR MaLR 0 378 1 7 1170 253 305 10 31 chr12 76794583 76794681 -44462849 - Charlie7 DNA MER1_type -2505 107 12 7 1170 700 190 0 47 chr12 76794876 76795025 -44462505 + ID_B1 SINE B4 82 223 -1 7 1170 636 235 65 0 chr12 76795028 76795181 -44462349 + RSINE1 SINE B4 3 165 0 7 1170 1165 82 0 0 chr12 76795233 76795380 -44462150 + B1_Mus2 SINE Alu 1 147 0 7 1170 254 29 0 28 chr12 76795385 76795421 -44462109 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1170 222 167 0 0 chr12 76795443 76795479 -44462051 + B2_Mm2 SINE B2 2 37 -158 7 1170 253 249 95 22 chr12 76795501 76795629 -44461901 + L1M5 LINE L1 5354 5501 -623 7 1170 272 240 86 116 chr12 76795688 76795726 -44461804 - B2_Mm2 SINE B2 -1 194 158 7 1170 1100 86 5 0 chr12 76795726 76795950 -44461580 + (TG)n Simple_repeat Simple_repeat 1 225 0 7 1170 515 225 74 18 chr12 76795950 76796106 -44461424 - B3A SINE B2 -38 160 3 7 1170 314 98 20 0 chr12 76796511 76796562 -44460968 + (GGA)n Simple_repeat Simple_repeat 3 54 0 7 1170 1257 55 6 25 chr12 76796589 76796947 -44460583 + (GAAA)n Simple_repeat Simple_repeat 1 350 0 7 1170 351 271 39 0 chr12 76796966 76797095 -44460435 + BC1_Mm scRNA scRNA 6 139 -13 7 1170 582 118 0 0 chr12 76797185 76797278 -44460252 + (TCC)n Simple_repeat Simple_repeat 2 94 0 7 1170 729 192 233 0 chr12 76797297 76797469 -44460061 + B3 SINE B2 4 215 -1 7 1170 228 278 121 11 chr12 76797513 76797604 -44459926 - B3 SINE B2 -67 149 49 7 1170 418 33 33 0 chr12 76797757 76797817 -44459713 + (TTTTTG)n Simple_repeat Simple_repeat 5 66 0 7 1170 1394 62 34 6 chr12 76798456 76798635 -44458895 + B2_Mm2 SINE B2 2 185 -10 7 1170 705 235 138 11 chr12 76798636 76798817 -44458713 - B3 SINE B2 -12 204 1 7 1170 766 188 161 170 chr12 76798841 76799016 -44458514 - B3 SINE B2 0 216 41 7 1170 1331 64 41 0 chr12 76799016 76799187 -44458343 - B2_Mm2 SINE B2 -14 181 4 7 1170 766 188 161 170 chr12 76799187 76799229 -44458301 - B3 SINE B2 -176 40 1 7 1170 600 14 0 0 chr12 76799512 76799581 -44457949 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 7 1170 504 0 0 0 chr12 76799581 76799637 -44457893 + (TC)n Simple_repeat Simple_repeat 2 57 0 7 1170 1154 74 0 7 chr12 76799637 76799786 -44457744 - B1_Mus1 SINE Alu 0 148 1 7 1170 961 237 19 5 chr12 76799805 76800017 -44457513 - B3 SINE B2 0 216 2 7 1170 351 0 0 0 chr12 76800028 76800067 -44457463 + (TAA)n Simple_repeat Simple_repeat 1 39 0 7 1170 558 202 59 0 chr12 76800112 76800231 -44457299 - B1_Mur1 SINE Alu -17 132 7 7 1170 332 299 29 43 chr12 76800231 76800252 -44457278 - ID_B1 SINE B4 -17 207 70 7 1170 593 171 81 0 chr12 76800740 76800851 -44456679 - B3 SINE B2 -95 121 2 7 1170 21 36 0 0 chr12 76800851 76800879 -44456651 + AT_rich Low_complexity Low_complexity 1 28 0 7 1170 672 257 0 0 chr12 76801042 76801178 -44456352 + RSINE1 SINE B4 1 136 -29 7 1170 266 333 12 0 chr12 76801403 76801487 -44456043 + ID_B1 SINE B4 85 169 -55 7 1170 443 127 65 65 chr12 76801567 76801660 -44455870 - B1_Mur2 SINE Alu -4 145 53 7 1170 252 0 0 0 chr12 76801695 76801723 -44455807 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1170 737 67 0 9 chr12 76801741 76801846 -44455684 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 7 1170 240 43 21 42 chr12 76802008 76802056 -44455474 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 7 1170 21 0 0 0 chr12 76803612 76803633 -44453897 + AT_rich Low_complexity Low_complexity 1 21 0 7 1170 441 290 38 15 chr12 76803891 76804024 -44453506 + B1F SINE Alu 1 136 -13 7 1170 837 162 7 0 chr12 76804206 76804342 -44453188 + B1_Mur4 SINE Alu 1 137 -13 7 1170 302 45 0 22 chr12 76804344 76804389 -44453141 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1170 490 191 163 30 chr12 76804505 76804640 -44452890 + B3 SINE B2 1 153 -63 7 1170 386 69 17 0 chr12 76804652 76804710 -44452820 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1170 737 246 36 25 chr12 76804869 76805065 -44452465 + ID_B1 SINE B4 21 218 -6 7 1170 456 244 174 0 chr12 76805380 76805495 -44452035 + ID_B1 SINE B4 90 224 0 7 1170 255 31 0 0 chr12 76805593 76805625 -44451905 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 7 1170 941 61 0 205 chr12 76805636 76805821 -44451709 + B1_Mus2 SINE Alu 1 147 0 7 1170 740 245 78 5 chr12 76805831 76806036 -44451494 + ID_B1 SINE B4 3 222 -2 7 1170 946 245 45 11 chr12 76806139 76806403 -44451127 + B4A SINE B4 1 273 -19 7 1170 22 0 0 0 chr12 76806442 76806464 -44451066 + AT_rich Low_complexity Low_complexity 1 22 0 7 1170 1414 65 37 21 chr12 76806530 76806720 -44450810 - B2_Mm2 SINE B2 -2 193 1 7 1170 444 258 16 31 chr12 76806829 76806957 -44450573 - B1F SINE Alu -2 147 22 7 1170 804 149 21 0 chr12 76807224 76807365 -44450165 + B1_Mur4 SINE Alu 6 149 -1 7 1170 200 167 0 0 chr12 76807365 76807395 -44450135 + (TAG)n Simple_repeat Simple_repeat 3 32 0 7 1170 1357 163 171 26 chr12 76807408 76807717 -44449813 + ORR1B1 LTR MaLR 41 394 0 7 1171 329 308 31 93 chr12 76808256 76808417 -44449113 - RSINE1 SINE B4 -13 152 2 7 1171 1225 55 0 0 chr12 76808449 76808595 -44448935 + B1_Mm SINE Alu 2 147 0 7 1171 180 0 0 0 chr12 76808595 76808615 -44448915 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 7 1171 938 79 36 0 chr12 76808623 76808763 -44448767 + B2_Mm2 SINE B2 1 145 -50 7 1171 552 30 0 0 chr12 76808785 76808851 -44448679 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 7 1171 796 192 7 27 chr12 76808882 76809032 -44448498 - B1_Mur1 SINE Alu -2 147 1 7 1171 836 193 111 0 chr12 76809039 76809220 -44448310 - B3 SINE B2 0 216 16 7 1171 433 261 61 34 chr12 76809319 76809466 -44448064 - MTEb LTR MaLR -224 155 5 7 1171 937 138 14 14 chr12 76809786 76809933 -44447597 - B1_Mus1 SINE Alu 0 148 2 7 1171 1339 168 18 0 chr12 76810063 76810283 -44447247 - URR1A DNA MER1_type -2 224 1 7 1171 1420 79 11 0 chr12 76810289 76810478 -44447052 + B2_Mm1t SINE B2 3 193 0 7 1171 1844 155 44 67 chr12 76810546 76810933 -44446597 + ORR1C1 LTR MaLR 1 378 0 7 1171 212 275 101 0 chr12 76811075 76811139 -44446391 + B2_Mm2 SINE B2 2 72 -123 7 1171 324 70 0 0 chr12 76811139 76811182 -44446348 + (CATA)n Simple_repeat Simple_repeat 4 46 0 7 1171 551 265 34 7 chr12 76811216 76811364 -44446166 - B3 SINE B2 0 216 65 7 1171 423 289 99 75 chr12 76811365 76811526 -44446004 + ID_B1 SINE B4 50 214 -10 7 1171 768 316 8 25 chr12 76811755 76811995 -44445535 - B4 SINE B4 -55 237 2 7 1171 770 294 14 14 chr12 76812084 76812291 -44445239 + B4A SINE B4 27 233 -59 7 1171 1134 79 0 0 chr12 76812380 76812519 -44445011 + B1_Mus1 SINE Alu 1 139 -9 7 1171 207 0 0 0 chr12 76812519 76812542 -44444988 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1171 371 189 152 76 chr12 76813033 76813165 -44444365 + B1F SINE Alu 7 148 -1 8 1171 576 133 115 0 chr12 76813305 76813418 -44444112 + B1_Mus2 SINE Alu 22 147 0 8 1171 220 242 32 14 chr12 76813724 76813816 -44443714 - ID4 SINE ID -57 95 2 8 1171 337 254 7 164 chr12 76813820 76813903 -44443627 - ID_B1 SINE B4 0 224 157 8 1171 1222 54 0 0 chr12 76813903 76814050 -44443480 + B1_Mus2 SINE Alu 1 147 0 8 1171 337 254 7 164 chr12 76814050 76814112 -44443418 - ID_B1 SINE B4 -68 156 102 8 1171 660 244 55 6 chr12 76814172 76814337 -44443193 + B3 SINE B2 5 177 -39 8 1171 473 179 50 67 chr12 76814369 76814489 -44443041 + PB1D9 SINE Alu 2 119 -1 8 1171 267 242 102 0 chr12 76814927 76815029 -44442501 + PB1D7 SINE Alu 1 112 -8 8 1171 611 117 39 0 chr12 76815081 76815184 -44442346 + B1_Mur4 SINE Alu 35 141 -9 8 1171 23 0 0 0 chr12 76816276 76816299 -44441231 + AT_rich Low_complexity Low_complexity 1 23 0 8 1171 635 247 20 0 chr12 76817734 76817884 -44439646 + ID_B1 SINE B4 2 154 -70 8 1171 308 270 120 0 chr12 76817816 76817916 -44439614 + PB1D10 SINE Alu 6 117 0 8 1171 1038 82 135 25 chr12 76817961 76818124 -44439406 + B2_Mm2 SINE B2 1 181 -14 8 1171 348 148 14 0 chr12 76818136 76818201 -44439329 + B2_Mm2 SINE B2 46 116 -82 8 1171 686 164 0 130 chr12 76818294 76818448 -44439082 - B1_Mus2 SINE Alu -1 146 13 8 1171 1380 81 27 0 chr12 76818448 76818633 -44438897 + B2_Mm1t SINE B2 1 190 -3 8 1171 309 281 12 12 chr12 76818963 76819046 -44438484 + B1F1 SINE Alu 63 145 -4 8 1171 366 132 0 0 chr12 76819113 76819189 -44438341 + (T)n Simple_repeat Simple_repeat 1 76 0 8 1171 294 281 67 0 chr12 76819642 76819731 -44437799 + PB1D10 SINE Alu 23 117 0 8 1171 227 236 0 141 chr12 76819833 76819897 -44437633 - RSINE1 SINE B4 -108 57 3 8 1171 225 0 0 0 chr12 76819918 76819943 -44437587 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1171 535 284 43 6 chr12 76819949 76820112 -44437418 - B3 SINE B2 -46 170 2 8 1171 2854 58 0 0 chr12 76820205 76820551 -44436979 + ORR1A1 LTR MaLR 1 346 0 8 1171 289 255 61 10 chr12 76820595 76820694 -44436836 + B1F SINE Alu 45 148 -1 8 1171 588 296 45 0 chr12 76820834 76821010 -44436520 + B3A SINE B2 15 198 0 8 1171 589 269 8 0 chr12 76821145 76821279 -44436251 - B1_Mur1 SINE Alu 0 149 15 8 1171 195 162 0 0 chr12 76821287 76821324 -44436206 + CT-rich Low_complexity Low_complexity 2 38 0 8 1171 1380 82 27 0 chr12 76821560 76821744 -44435786 + B2_Mm2 SINE B2 2 190 -5 8 1171 255 164 135 14 chr12 76821770 76821844 -44435686 + PB1D9 SINE Alu 19 101 -19 8 1171 294 29 0 0 chr12 76822505 76822540 -44434990 + (GGA)n Simple_repeat Simple_repeat 2 36 0 8 1171 279 79 0 0 chr12 76822608 76822646 -44434884 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1171 21 0 0 0 chr12 76823420 76823441 -44434089 + AT_rich Low_complexity Low_complexity 1 21 0 8 1171 315 0 0 0 chr12 76823593 76823628 -44433902 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1171 851 136 0 21 chr12 76823912 76824055 -44433475 - B1_Mur3 SINE Alu -1 148 9 8 1171 243 0 0 0 chr12 76824071 76824098 -44433432 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1171 459 300 0 0 chr12 76824351 76824471 -44433059 + B1F2 SINE Alu 9 128 -21 8 1171 244 229 14 54 chr12 76824668 76824742 -44432788 + PB1D7 SINE Alu 41 111 -9 8 1171 543 246 25 0 chr12 76825013 76825135 -44432395 - ID_B1 SINE B4 -19 205 81 8 1171 180 0 0 0 chr12 76825397 76825417 -44432113 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 8 1171 289 176 19 38 chr12 76825677 76825783 -44431747 + (CATATA)n Simple_repeat Simple_repeat 1 104 0 8 1171 1185 48 0 7 chr12 76826335 76826482 -44431048 + B1_Mus2 SINE Alu 2 147 0 8 1171 221 257 12 139 chr12 76826562 76826648 -44430882 + PB1D10 SINE Alu 36 110 -7 8 1171 312 293 125 79 chr12 76826766 76826918 -44430612 - MLT2D LTR ERVL -9 551 393 8 1171 245 157 0 38 chr12 76826955 76827008 -44430522 + RSINE1 SINE B4 79 129 -36 8 1171 405 0 0 0 chr12 76827022 76827067 -44430463 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 8 1171 328 174 250 0 chr12 76827075 76827167 -44430363 + B1_Mus1 SINE Alu 13 127 -21 8 1171 35 24 0 0 chr12 76827167 76827209 -44430321 + AT_rich Low_complexity Low_complexity 1 42 0 8 1171 396 233 32 79 chr12 76827578 76827704 -44429826 + PB1D9 SINE Alu 1 120 0 8 1171 802 153 50 21 chr12 76827811 76827951 -44429579 + B1_Mus2 SINE Alu 1 144 -3 8 1171 1291 20 0 0 chr12 76828062 76828209 -44429321 + B1_Mus2 SINE Alu 1 147 0 8 1171 234 0 0 0 chr12 76828209 76828235 -44429295 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1171 359 230 16 103 chr12 76828957 76828972 -44428558 - PB1D9 SINE Alu 0 120 107 8 1171 1115 81 0 7 chr12 76828972 76829121 -44428409 - B1_Mus1 SINE Alu 0 148 1 8 1171 359 230 16 103 chr12 76829121 76829231 -44428299 - PB1D9 SINE Alu -14 106 6 8 1171 401 298 145 38 chr12 76829312 76829574 -44427956 - B4A SINE B4 -2 290 1 8 1171 719 263 39 34 chr12 76829623 76829828 -44427702 - B4 SINE B4 0 292 87 8 1171 531 272 73 42 chr12 76829848 76830040 -44427490 - B3A SINE B2 0 198 1 8 1171 297 0 0 0 chr12 76830307 76830340 -44427190 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1171 1101 107 71 0 chr12 76830471 76830639 -44426891 + B2_Mm2 SINE B2 2 181 -14 8 1171 306 127 0 35 chr12 76830686 76830743 -44426787 + B2_Mm2 SINE B2 47 101 -94 8 1171 1239 41 0 0 chr12 76830794 76830941 -44426589 + B1_Mm SINE Alu 1 147 0 8 1171 330 26 0 0 chr12 76830941 76830980 -44426550 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1171 322 267 45 45 chr12 76830987 76831097 -44426433 + PB1D9 SINE Alu 10 119 -1 8 1171 717 182 88 0 chr12 76831126 76831263 -44426267 + B1_Mur4 SINE Alu 2 150 0 8 1171 347 308 37 15 chr12 76832212 76832347 -44425183 + L1M5 LINE L1 4516 4653 -1493 8 1171 496 235 36 7 chr12 76832352 76832489 -44425041 + B1F SINE Alu 1 141 -8 8 1171 222 37 0 0 chr12 76832512 76832539 -44424991 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1171 1433 69 16 0 chr12 76833001 76833190 -44424340 - B2_Mm2 SINE B2 -2 193 2 8 1171 466 264 143 12 chr12 76833205 76833366 -44424164 + B3A SINE B2 1 182 -16 8 1171 226 278 0 0 chr12 76833366 76833420 -44424110 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1171 346 283 61 0 chr12 76833485 76833584 -44423946 + B1F SINE Alu 20 124 -25 8 1171 315 194 114 79 chr12 76833584 76833724 -44423806 + L1MB8 LINE L1 5705 5849 -325 8 1171 342 0 0 0 chr12 76833753 76833791 -44423739 + (TA)n Simple_repeat Simple_repeat 1 38 0 8 1171 933 103 43 22 chr12 76833842 76833981 -44423549 + B1_Mur4 SINE Alu 2 143 -7 8 1171 253 252 35 61 chr12 76834007 76834121 -44423409 + L1MB8 LINE L1 5871 5981 -197 8 1171 459 114 24 71 chr12 76834232 76834317 -44423213 + B1F1 SINE Alu 69 149 0 8 1171 210 91 0 0 chr12 76834459 76834492 -44423038 + (TC)n Simple_repeat Simple_repeat 1 33 0 8 1171 26 50 0 0 chr12 76836265 76836305 -44421225 + GC_rich Low_complexity Low_complexity 1 40 0 8 1171 32 81 0 0 chr12 76836663 76836737 -44420793 + GC_rich Low_complexity Low_complexity 1 74 0 8 1171 309 76 30 15 chr12 76837281 76837348 -44420182 + (TTTTTG)n Simple_repeat Simple_repeat 3 70 0 8 1171 442 283 36 14 chr12 76837349 76837489 -44420041 - ID_B1 SINE B4 -1 223 81 8 1171 351 244 11 11 chr12 76837841 76837932 -44419598 + PB1D10 SINE Alu 27 117 0 8 1171 381 236 22 11 chr12 76838331 76838421 -44419109 - B1F2 SINE Alu -17 132 42 8 1171 311 250 0 0 chr12 76838527 76838595 -44418935 + ID_B1 SINE B4 81 148 -76 8 1171 351 245 140 9 chr12 76839143 76839250 -44418280 + RSINE1 SINE B4 4 124 -41 8 1171 785 153 7 21 chr12 76839423 76839563 -44417967 - B1_Mus2 SINE Alu -1 146 9 8 1171 265 0 0 70 chr12 76839691 76839734 -44417796 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 8 1171 359 174 248 0 chr12 76839735 76839844 -44417686 - B1_Mur1 SINE Alu -13 136 1 8 1171 200 59 29 0 chr12 76839854 76839888 -44417642 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1171 1143 51 0 0 chr12 76840122 76840260 -44417270 + B1_Mus2 SINE Alu 2 139 -8 8 1171 264 268 0 3 chr12 76840338 76840426 -44417104 - B3A SINE B2 -127 89 3 8 1171 337 314 6 81 chr12 76840466 76840639 -44416891 - RSINE1 SINE B4 0 165 6 8 1171 636 139 205 0 chr12 76841055 76841177 -44416353 - B1_Mur4 SINE Alu -2 148 2 8 1171 330 26 0 0 chr12 76841178 76841217 -44416313 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1171 304 276 0 30 chr12 76841218 76841319 -44416211 - PB1D10 SINE Alu -15 102 5 8 1171 789 188 7 14 chr12 76841638 76841784 -44415746 + B1_Mur2 SINE Alu 1 145 -4 8 1171 628 215 108 0 chr12 76842070 76842200 -44415330 + B1_Mur4 SINE Alu 2 145 -5 8 1171 357 93 0 0 chr12 76842217 76842271 -44415259 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 8 1171 228 321 76 28 chr12 76842274 76842286 -44415244 + ID_B1 SINE B4 71 126 -98 8 1171 259 289 113 9 chr12 76842286 76842401 -44415129 + B1F2 SINE Alu 3 129 -20 8 1171 228 321 76 28 chr12 76842401 76842418 -44415112 + ID_B1 SINE B4 127 221 -3 8 1171 302 254 0 0 chr12 76842427 76842490 -44415040 + ID4_ SINE ID 3 65 -18 8 1171 305 340 10 0 chr12 76842794 76842891 -44414639 + PB1 SINE Alu 7 104 -23 8 1171 510 191 15 7 chr12 76842901 76843038 -44414492 + GA-rich Low_complexity Low_complexity 2 139 0 9 1171 1048 198 27 55 chr12 76843163 76843420 -44414110 + RLTR14 LTR ERV1 1 250 -132 9 1171 221 0 35 0 chr12 76843424 76843453 -44414077 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 9 1171 260 314 87 10 chr12 76843532 76843635 -44413895 + ID_B1 SINE B4 114 224 0 9 1171 777 239 82 0 chr12 76843658 76843842 -44413688 + B3 SINE B2 1 199 -17 9 1171 311 290 16 9 chr12 76843842 76843933 -44413597 + B1F SINE Alu 6 94 -53 9 1171 497 306 40 14 chr12 76844550 76844772 -44412758 - Lx8 LINE L1 -380 7093 6866 9 1171 1394 78 6 0 chr12 76844924 76845103 -44412427 - B2_Mm2 SINE B2 -14 181 2 9 1171 378 0 0 0 chr12 76845138 76845180 -44412350 + (TTA)n Simple_repeat Simple_repeat 2 43 0 9 1171 1202 55 0 0 chr12 76845180 76845325 -44412205 - B1_Mus2 SINE Alu -2 145 1 9 1171 1432 69 26 11 chr12 76845332 76845522 -44412008 - B2_Mm2 SINE B2 -1 194 2 9 1171 537 257 75 27 chr12 76845699 76845887 -44411643 + B3A SINE B2 2 198 0 9 1171 2577 58 12 6 chr12 76846116 76846448 -44411082 + L1_Mus1 LINE L1 6234 6567 0 9 1171 292 350 83 45 chr12 76846618 76847082 -44410448 - MER34A LTR ERV1 -5 537 72 9 1171 204 67 0 0 chr12 76847184 76847214 -44410316 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1171 224 248 216 26 chr12 76847301 76847332 -44410198 + B1_Mus1 SINE Alu 10 143 -1 9 1171 288 200 74 74 chr12 76847332 76847413 -44410117 + ID_B1 SINE B4 138 218 -6 9 1171 316 238 0 0 chr12 76847567 76847630 -44409900 + B1F SINE Alu 1 63 -86 9 1171 2210 187 72 40 chr12 76847701 76848225 -44409305 - RLTR20A LTR ERVK 0 541 1 9 1171 865 121 0 7 chr12 76848225 76848365 -44409165 + B1_Mus1 SINE Alu 10 148 0 9 1171 388 328 25 0 chr12 76848502 76848621 -44408909 + ID_B1 SINE B4 82 203 -21 9 1171 2269 164 8 5 chr12 76849017 76849396 -44408134 + RLTR14 LTR ERV1 1 380 -2 9 1171 830 140 7 0 chr12 76849422 76849558 -44407972 - B1_Mus2 SINE Alu 0 147 11 9 1171 225 211 17 17 chr12 76850305 76850363 -44407167 - RSINE1 SINE B4 -29 136 79 9 1171 321 232 90 60 chr12 76850437 76850570 -44406960 - B4A SINE B4 -155 137 1 9 1171 480 48 0 0 chr12 76850702 76850765 -44406765 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 1171 458 127 98 33 chr12 76850773 76850895 -44406635 + Lx3A LINE L1 6852 6981 0 9 1171 279 0 0 0 chr12 76851028 76851059 -44406471 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1171 679 195 161 10 chr12 76851158 76851350 -44406180 + RLTR12B LTR ERVK 275 495 -33 9 1171 383 226 0 23 chr12 76851383 76851469 -44406061 - PB1D9 SINE Alu -35 85 2 9 1171 557 271 54 43 chr12 76851469 76851647 -44405883 - MTEa LTR MaLR -197 182 3 9 1171 617 257 111 0 chr12 76851647 76851816 -44405714 - ID_B1 SINE B4 -35 189 2 9 1171 516 228 0 34 chr12 76851828 76851946 -44405584 - PB1D9 SINE Alu -5 115 2 9 1171 621 222 65 22 chr12 76852057 76852195 -44405335 + B1_Mur2 SINE Alu 1 144 -5 9 1171 327 146 0 0 chr12 76852195 76852250 -44405280 + (GGA)n Simple_repeat Simple_repeat 3 57 0 9 1171 23 33 0 0 chr12 76852281 76852311 -44405219 + AT_rich Low_complexity Low_complexity 1 30 0 9 1171 1246 20 0 13 chr12 76852346 76852495 -44405035 + B1_Mus2 SINE Alu 1 147 0 9 1171 593 246 35 21 chr12 76852513 76852658 -44404872 - B3 SINE B2 -41 175 29 9 1171 306 0 0 0 chr12 76852658 76852692 -44404838 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 9 1171 528 74 0 5 chr12 76852692 76852778 -44404752 - B1_Mus2 SINE Alu -13 136 53 9 1171 415 297 17 68 chr12 76852795 76852958 -44404572 + ID_B1 SINE B4 66 216 -8 9 1171 859 173 200 6 chr12 76853462 76853642 -44403888 - B3 SINE B2 -1 215 1 9 1171 236 322 84 32 chr12 76853642 76853796 -44403734 - MLT1A LTR MaLR -35 339 178 9 1171 466 306 43 25 chr12 76853943 76854104 -44403426 + MER2B DNA MER2_type 173 336 0 9 1171 473 207 24 16 chr12 76854132 76854273 -44403257 + PB1D10 SINE Alu 3 149 0 9 1171 249 290 69 42 chr12 76854283 76854355 -44403175 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 9 1171 293 288 14 2 chr12 76854440 76854527 -44403003 + ID2 SINE ID 8 94 -58 9 1171 226 227 0 70 chr12 76855173 76855195 -44402335 + T-rich Low_complexity Low_complexity 46 67 0 9 1171 296 177 45 102 chr12 76855195 76855283 -44402247 - ID4 SINE ID 0 83 1 9 1171 226 227 0 70 chr12 76855283 76855331 -44402199 + T-rich Low_complexity Low_complexity 2 45 0 9 1171 656 164 66 22 chr12 76855360 76855497 -44402033 - B1_Mur2 SINE Alu -2 147 5 9 1171 382 229 19 58 chr12 76855535 76855688 -44401842 + PB1D9 SINE Alu 3 141 -9 9 1171 495 107 0 0 chr12 76855867 76855942 -44401588 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1171 22 35 0 0 chr12 76856033 76856062 -44401468 + AT_rich Low_complexity Low_complexity 1 29 0 9 1171 795 228 38 5 chr12 76856085 76856270 -44401260 - B3 SINE B2 -25 191 1 9 1171 319 300 0 0 chr12 76856327 76856407 -44401123 + B3A SINE B2 1 80 -118 9 1171 466 248 71 0 chr12 76856555 76856668 -44400862 + B3 SINE B2 83 203 -13 9 1171 198 0 0 0 chr12 76856681 76856703 -44400827 + (TGG)n Simple_repeat Simple_repeat 2 23 0 9 1171 365 167 28 0 chr12 76856711 76856783 -44400747 - PB1D9 SINE Alu -26 94 21 9 1171 649 110 9 9 chr12 76857098 76857208 -44400322 + (TTTC)n Simple_repeat Simple_repeat 4 113 0 9 1171 510 248 0 64 chr12 76857208 76857333 -44400197 - PB1D9 SINE Alu 0 120 4 9 1171 248 131 0 21 chr12 76857362 76857409 -44400121 + GA-rich Low_complexity Low_complexity 4 49 0 9 1171 749 223 7 0 chr12 76857417 76857556 -44399974 + B1_Mur1 SINE Alu 2 141 -8 9 1171 1267 28 0 0 chr12 76857789 76857934 -44399596 + B1_Mm SINE Alu 1 145 -2 9 1171 855 169 0 7 chr12 76858089 76858232 -44399298 - B1_Mur3 SINE Alu -7 142 1 9 1171 483 224 42 66 chr12 76858583 76858750 -44398780 - B4A SINE B4 -128 164 2 9 1171 670 174 105 8 chr12 76858780 76858913 -44398617 - B1_Mus1 SINE Alu 0 148 3 9 1171 1027 152 82 10 chr12 76858913 76859002 -44398528 + URR1B DNA MER1_type 3 91 -134 9 1171 1491 63 5 5 chr12 76859002 76859194 -44398336 + B2_Mm1a SINE B2 2 193 0 9 1171 1027 152 82 10 chr12 76859194 76859310 -44398220 + URR1B DNA MER1_type 92 222 -3 9 1171 663 258 0 8 chr12 76859311 76859444 -44398086 + RSINE1 SINE B4 16 147 -18 9 1171 500 233 128 0 chr12 76860050 76860183 -44397347 + ID_B1 SINE B4 2 151 -73 9 1171 219 114 0 0 chr12 76860289 76860324 -44397206 + (GA)n Simple_repeat Simple_repeat 1 35 0 9 1171 492 18 0 0 chr12 76860324 76860381 -44397149 + (TA)n Simple_repeat Simple_repeat 1 57 0 9 1171 297 0 0 0 chr12 76860381 76860413 -44397117 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 1171 215 259 0 49 chr12 76860803 76860864 -44396666 + CT-rich Low_complexity Low_complexity 4 61 0 9 1171 356 236 12 18 chr12 76861148 76861258 -44396272 + B1F SINE Alu 1 106 -11 9 1171 216 0 0 0 chr12 76861346 76861370 -44396160 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1171 2148 164 5 8 chr12 76861419 76861787 -44395743 + ORR1B2 LTR MaLR 1 367 0 9 1171 666 0 0 0 chr12 76862188 76862262 -44395268 + (GA)n Simple_repeat Simple_repeat 2 75 0 9 1171 452 316 44 15 chr12 76862606 76862741 -44394789 - B1F1 SINE Alu -5 144 6 9 1171 460 313 151 45 chr12 76863054 76863636 -44393894 - L1MC4 LINE L1 -125 7917 7274 9 1171 472 302 112 20 chr12 76863647 76863843 -44393687 - ID_B1 SINE B4 -6 218 5 9 1171 968 90 13 34 chr12 76863853 76863865 -44393665 - B1_Mur4 SINE Alu 0 150 139 9 1171 246 95 0 0 chr12 76863865 76863907 -44393623 + (TTAG)n Simple_repeat Simple_repeat 3 44 0 9 1171 1022 47 1 1 chr12 76863907 76864043 -44393487 - B1_Mm SINE Alu -8 139 5 9 1171 710 196 138 6 chr12 76864067 76864241 -44393289 - B3 SINE B2 -15 201 5 9 1171 265 277 231 16 chr12 76864288 76864409 -44393121 - B1F SINE Alu -2 147 1 9 1171 552 235 43 7 chr12 76864453 76864712 -44392818 - ORR1D1 LTR MaLR 0 374 53 9 1171 248 53 26 0 chr12 76864728 76864766 -44392764 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 1171 1146 201 137 9 chr12 76864849 76865185 -44392345 - RMER16 LTR ERVK 0 533 155 9 1171 1257 199 221 20 chr12 76865250 76865599 -44391931 + MTD LTR MaLR 1 419 0 9 1171 392 256 43 65 chr12 76865629 76865644 -44391886 - B4 SINE B4 -71 221 172 9 1171 535 196 0 89 chr12 76865644 76865675 -44391855 - B1_Mur4 SINE Alu -37 113 89 9 1171 1059 192 129 58 chr12 76865675 76865985 -44391545 - IAPEY3_LTR LTR ERVK 0 332 1 9 1171 392 256 43 65 chr12 76865985 76866076 -44391454 - B4 SINE B4 -121 171 87 9 1171 237 211 0 0 chr12 76866107 76866159 -44391371 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 9 1171 436 258 46 15 chr12 76866238 76866368 -44391162 + B3 SINE B2 83 216 0 9 1171 227 182 0 0 chr12 76866481 76866525 -44391005 + GA-rich Low_complexity Low_complexity 2 45 0 9 1171 244 312 10 10 chr12 76866723 76866820 -44390710 + MIR SINE MIR 164 260 -2 9 1171 271 208 0 0 chr12 76867394 76867447 -44390083 + B3 SINE B2 1 53 -163 9 1171 414 0 0 0 chr12 76867470 76867516 -44390014 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1171 273 250 12 84 chr12 76867550 76867633 -44389897 + B3A SINE B2 1 77 -121 9 1171 438 36 0 0 chr12 76867820 76867876 -44389654 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1171 363 244 0 0 chr12 76867880 76867970 -44389560 - RSINE1 SINE B4 -69 96 7 1 1171 302 109 18 0 chr12 76868269 76868324 -44389206 - B3A SINE B2 -142 56 1 1 1171 526 318 71 5 chr12 76868567 76868763 -44388767 - MLT1A0 LTR MaLR -28 337 129 1 1171 228 194 48 0 chr12 76868783 76868845 -44388685 + ID4 SINE ID 15 79 -4 1 1171 768 230 41 20 chr12 76868923 76869118 -44388412 + B3 SINE B2 5 203 -13 1 1171 2538 37 12 6 chr12 76869118 76869447 -44388083 - IAPEY_LTR LTR ERVK -2 383 53 1 1171 230 333 30 0 chr12 76869692 76869758 -44387772 - RSINE1 SINE B4 -16 149 82 1 1171 502 76 130 19 chr12 76869746 76869850 -44387680 - ORR1B1 LTR MaLR -254 140 1 1 1171 21 0 0 0 chr12 76870013 76870034 -44387496 + AT_rich Low_complexity Low_complexity 1 21 0 1 1171 2226 267 65 30 chr12 76870035 76870479 -44387051 + Lx9 LINE L1 6842 7285 -359 1 1171 252 0 0 0 chr12 76870479 76870507 -44387023 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1171 2226 267 65 30 chr12 76870507 76870787 -44386743 + Lx9 LINE L1 7286 7590 -54 1 1171 189 74 0 0 chr12 76870868 76870895 -44386635 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1171 391 263 107 25 chr12 76870913 76871034 -44386496 - RSINE1 SINE B4 -29 136 6 1 1171 323 151 19 0 chr12 76871099 76871152 -44386378 + B1_Mus2 SINE Alu 1 54 -93 1 1171 277 231 92 0 chr12 76871152 76871164 -44386366 + B4A SINE B4 86 156 -136 1 1171 845 112 104 7 chr12 76871195 76871330 -44386200 + B1_Mur4 SINE Alu 2 149 -1 1 1171 612 282 10 67 chr12 76871349 76871543 -44385987 + RCHARR1 DNA MER1_type 65 247 -727 1 1171 1109 93 0 0 chr12 76871550 76871711 -44385819 - MTA_Mm LTR MaLR -235 161 1 1 1171 378 253 260 18 chr12 76871711 76871788 -44385742 + RCHARR1 DNA MER1_type 249 323 -651 1 1171 387 0 0 0 chr12 76871788 76871831 -44385699 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1171 378 253 260 18 chr12 76871831 76871913 -44385617 + RCHARR1 DNA MER1_type 324 448 -526 1 1171 661 189 8 30 chr12 76871936 76872067 -44385463 + B1_Mur1 SINE Alu 21 148 -1 1 1171 261 254 0 0 chr12 76872109 76872176 -44385354 + RCHARR1 DNA MER1_type 754 820 -154 1 1171 228 67 0 0 chr12 76872181 76872211 -44385319 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 1 1171 236 200 67 143 chr12 76872378 76872416 -44385114 - PB1D10 SINE Alu -1 116 20 1 1171 261 284 15 0 chr12 76872416 76872483 -44385047 - ID_B1 SINE B4 -56 168 101 1 1171 228 342 41 8 chr12 76872688 76872809 -44384721 + RMER5 LTR ERV1 383 507 -27 1 1171 1060 89 7 20 chr12 76872996 76873010 -44384520 - B1_Mm SINE Alu 0 147 136 1 1171 729 34 0 0 chr12 76873010 76873098 -44384432 + (TTTTC)n Simple_repeat Simple_repeat 3 90 0 1 1171 1060 89 7 20 chr12 76873098 76873232 -44384298 - B1_Mm SINE Alu -12 135 1 1 1171 1303 54 48 6 chr12 76873252 76873420 -44384110 - B2_Mm2 SINE B2 -19 176 2 1 1171 269 183 33 0 chr12 76873427 76873487 -44384043 - L1M4 LINE L1 -3681 2465 2404 1 1171 527 274 3 17 chr12 76873555 76873693 -44383837 - B3A SINE B2 -32 161 37 1 1171 724 256 24 6 chr12 76873693 76873766 -44383764 + B3 SINE B2 3 75 -141 1 1171 279 0 0 0 chr12 76873766 76873797 -44383733 + (CCA)n Simple_repeat Simple_repeat 3 33 0 1 1171 724 257 26 10 chr12 76873797 76873914 -44383616 + B3 SINE B2 76 194 -4 1 1171 28 0 0 0 chr12 76873970 76873998 -44383532 + AT_rich Low_complexity Low_complexity 1 28 0 1 1171 582 222 8 0 chr12 76874040 76874157 -44383373 - B3 SINE B2 -98 118 1 1 1171 271 206 16 16 chr12 76874349 76874413 -44383117 + B1F SINE Alu 1 64 -85 1 1171 360 222 49 0 chr12 76874486 76874567 -44382963 + B4 SINE B4 1 85 -207 1 1171 533 92 0 39 chr12 76874714 76874816 -44382714 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 1 1171 242 250 0 0 chr12 76874859 76874911 -44382619 - ORR1C2 LTR MaLR 0 384 333 1 1171 291 188 28 27 chr12 76874911 76875006 -44382524 - MTD LTR MaLR -5 414 287 1 1171 335 294 85 78 chr12 76874985 76875243 -44382287 + RLTR12B LTR ERVK 15 274 -294 1 1171 1905 167 16 27 chr12 76875444 76875488 -44382042 - MTC LTR MaLR -55 366 325 1 1171 1227 226 137 60 chr12 76875488 76875935 -44381595 - RLTR28B LTR ERVL 0 481 1 1 1171 1905 167 16 27 chr12 76875935 76876260 -44381270 - MTC LTR MaLR -97 324 1 1 1171 1749 131 17 94 chr12 76876260 76876615 -44380915 - ORR1C1 LTR MaLR -51 327 1 1 1171 312 136 0 92 chr12 76876638 76876703 -44380827 + MT2B LTR ERVL 1 59 -474 1 1171 291 225 117 0 chr12 76876702 76876813 -44380717 + B3A SINE B2 75 198 0 1 1171 481 217 49 16 chr12 76876865 76876987 -44380543 + B1F SINE Alu 21 146 -3 1 1171 1867 121 0 80 chr12 76877001 76877350 -44380180 + ORR1A4 LTR MaLR 1 321 -8 1 1171 708 98 52 2 chr12 76877354 76877493 -44380037 + ORR1A4-int LTR MaLR 1 147 -1362 1 1171 346 176 44 0 chr12 76877488 76877556 -44379974 + ORR1A4-int LTR MaLR 635 705 -1258 1 1171 952 184 29 88 chr12 76877500 76877738 -44379792 + MT2B LTR ERVL 36 259 -342 1 1171 6975 116 14 77 chr12 76877741 76879071 -44378459 + ORR1A4-int LTR MaLR 718 1963 0 1 1171 281 26 0 0 chr12 76879071 76879109 -44378421 + ORR1A4 LTR MaLR 1 38 -291 1 1171 936 273 105 18 chr12 76879177 76879453 -44378077 - Lx8 LINE L1 -127 7346 7047 1 1171 520 258 86 76 chr12 76879456 76879666 -44377864 - MTD LTR MaLR -205 214 3 1 1171 1671 180 79 6 chr12 76879741 76880071 -44377459 + RMER19B LTR ERVK 309 662 -240 1 1171 1098 44 15 0 chr12 76880132 76880268 -44377262 - B1_Mus1 SINE Alu -9 139 2 1 1171 2376 139 64 125 chr12 76880268 76880844 -44376686 - RMER19B LTR ERVK -18 884 344 1 1171 350 133 33 0 chr12 76880844 76880904 -44376626 + RMER2 LTR ERV1 1 62 -505 1 1171 782 291 59 82 chr12 76880893 76881283 -44376247 + RMER2 LTR ERV1 171 551 -16 1 1171 1267 216 54 71 chr12 76881293 76881646 -44375884 - RMER19B LTR ERVK -555 347 1 1 1171 990 136 5 48 chr12 76881646 76881832 -44375698 + RMER19C LTR ERVK 434 611 0 1 1171 300 225 77 22 chr12 76881864 76881955 -44375575 - L1M2 LINE L1 -2116 4027 3932 1 1171 1006 75 0 8 chr12 76882050 76882184 -44375346 - B1_Mus1 SINE Alu -14 134 2 1 1171 615 38 0 45 chr12 76882203 76882313 -44375217 - RMER17B LTR ERVK -498 460 356 1 1171 459 285 32 0 chr12 76882325 76882448 -44375082 - B1F2 SINE Alu -5 144 18 1 1171 260 190 0 17 chr12 76882465 76882524 -44375006 - L1M2 LINE L1 -2208 3935 3878 1 1171 298 250 0 0 chr12 76882660 76882720 -44374810 + B1_Mur4 SINE Alu 1 60 -90 1 1171 269 61 0 0 chr12 76882721 76882754 -44374776 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 1 1171 378 162 0 0 chr12 76882754 76882828 -44374702 + GA-rich Low_complexity Low_complexity 2 75 0 1 1171 1409 185 89 141 chr12 76883700 76883833 -44373697 - RLTR14 LTR ERV1 0 382 248 1 1171 444 67 0 0 chr12 76883833 76883893 -44373637 + (CAAG)n Simple_repeat Simple_repeat 4 63 0 1 1171 1409 185 89 141 chr12 76883893 76884162 -44373368 - RLTR14 LTR ERV1 -135 247 1 1 1171 772 246 9 54 chr12 76884197 76884257 -44373273 - B3 SINE B2 -1 215 161 1 1171 336 48 0 0 chr12 76884257 76884299 -44373231 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1 1171 772 246 9 54 chr12 76884299 76884461 -44373069 - B3 SINE B2 -56 160 3 1 1171 255 254 0 60 chr12 76884585 76884652 -44372878 + RMER30 DNA MER1_type 133 195 -7 1 1171 898 74 0 0 chr12 76884692 76884814 -44372716 - B2_Mm2 SINE B2 -72 123 2 1 1171 214 192 39 0 chr12 76884842 76884876 -44372654 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 1 1171 279 0 0 0 chr12 76884876 76884907 -44372623 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1171 214 192 39 0 chr12 76884907 76884924 -44372606 + (TCTCTG)n Simple_repeat Simple_repeat 6 22 0 1 1171 213 235 116 12 chr12 76884949 76885035 -44372495 + PB1D10 SINE Alu 22 116 -1 1 1171 387 258 108 39 chr12 76885470 76885599 -44371931 + B1F1 SINE Alu 10 147 -2 1 1171 3098 66 10 2 chr12 76885784 76886177 -44371353 - MTA_Mm LTR MaLR 0 396 1 1 1171 6060 114 100 14 chr12 76886177 76887320 -44370210 - MTA_Mm-int LTR MaLR 0 1258 18 1 1171 3190 63 2 2 chr12 76887333 76887728 -44369802 - MTA_Mm LTR MaLR 0 396 2 1 1171 212 225 0 0 chr12 76887916 76887956 -44369574 + CT-rich Low_complexity Low_complexity 2 41 0 1 1171 219 36 0 0 chr12 76888083 76888111 -44369419 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1171 248 275 0 28 chr12 76888132 76888203 -44369327 + GA-rich Low_complexity Low_complexity 1 69 0 1 1171 203 125 25 0 chr12 76888205 76888245 -44369285 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1 1171 212 225 0 0 chr12 76888341 76888381 -44369149 + CT-rich Low_complexity Low_complexity 2 41 0 1 1171 374 279 57 9 chr12 76888408 76888513 -44369017 + PB1D9 SINE Alu 5 114 -6 1 1171 232 104 41 20 chr12 76889244 76889293 -44368237 + CT-rich Low_complexity Low_complexity 3 52 0 1 1171 519 261 125 59 chr12 76889774 76890030 -44367500 - B4 SINE B4 -17 275 3 1 1171 23 54 0 0 chr12 76890368 76890405 -44367125 + AT_rich Low_complexity Low_complexity 1 37 0 1 1171 392 144 64 57 chr12 76890935 76891051 -44366479 - B1_Mur3 SINE Alu -1 148 37 1 1171 294 20 19 57 chr12 76891057 76891110 -44366420 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1171 447 168 190 13 chr12 76891113 76891255 -44366275 - PB1D9 SINE Alu 0 149 1 1 1171 902 126 208 6 chr12 76891274 76891455 -44366075 + RMER4B LTR ERVK 17 234 -351 1 1171 874 55 0 0 chr12 76891455 76891565 -44365965 + B2_Mm2 SINE B2 3 112 -83 1 1171 198 0 0 0 chr12 76891576 76891598 -44365932 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1171 270 136 0 0 chr12 76891618 76891662 -44365868 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 1 1171 438 244 106 22 chr12 76891662 76891959 -44365571 + RMER4B LTR ERVK 225 575 -10 1 1171 733 273 28 6 chr12 76892017 76892194 -44365336 + B3 SINE B2 4 184 -32 1 1171 414 0 0 0 chr12 76892194 76892240 -44365290 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1171 530 222 100 2 chr12 76892263 76892379 -44365151 - B1_Mur4 SINE Alu 0 120 2 1 1171 23 33 0 0 chr12 76892379 76892409 -44365121 + AT_rich Low_complexity Low_complexity 1 30 0 1 1171 231 36 0 0 chr12 76892420 76892448 -44365082 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1171 270 0 0 0 chr12 76892448 76892477 -44365053 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1171 476 289 31 80 chr12 76892477 76892628 -44364902 - RSINE1 SINE B4 -13 152 9 1 1171 349 228 53 64 chr12 76892646 76892756 -44364774 + L1M5 LINE L1 3085 3193 -2953 1 1171 594 156 10 0 chr12 76892758 76892854 -44364676 + PB1D9 SINE Alu 23 119 -1 1 1171 245 251 0 0 chr12 76892860 76892928 -44364602 + PB1D7 SINE Alu 56 120 0 1 1171 1244 135 0 15 chr12 76893199 76893394 -44364136 - B2_Mm2 SINE B2 -1 194 3 1 1171 29 0 0 25 chr12 76893397 76893419 -44364111 + AT_rich Low_complexity Low_complexity 1 22 0 1 1171 1201 56 0 0 chr12 76893419 76893561 -44363969 - B1_Mus2 SINE Alu -5 142 1 1 1171 29 0 0 25 chr12 76893561 76893578 -44363952 + AT_rich Low_complexity Low_complexity 1 17 0 1 1171 625 139 31 0 chr12 76893945 76894074 -44363456 + GA-rich Low_complexity Low_complexity 4 136 0 1 1171 261 119 0 0 chr12 76894522 76894564 -44362966 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1171 265 311 14 0 chr12 76894835 76894909 -44362621 - ID4_ SINE ID -3 80 6 1 1171 279 293 0 134 chr12 76894925 76895067 -44362463 - PB1 SINE Alu -2 125 3 1 1171 1339 85 11 0 chr12 76895164 76895340 -44362190 + B2_Mm1t SINE B2 2 179 -14 1 1171 489 88 310 26 chr12 76895377 76895493 -44362037 + B2_Mm2 SINE B2 47 195 0 1 1171 316 240 67 0 chr12 76895911 76895986 -44361544 - ID4 SINE ID -1 82 3 1 1171 236 266 16 0 chr12 76896062 76896126 -44361404 - ID2 SINE ID -5 78 14 1 1171 707 202 181 18 chr12 76896211 76896377 -44361153 - B3A SINE B2 -4 194 2 1 1171 1111 86 147 0 chr12 76896496 76896659 -44360871 + B2_Mm2 SINE B2 1 187 -8 1 1171 458 209 216 0 chr12 76897032 76897166 -44360364 - RSINE1 SINE B4 0 165 3 1 1171 504 283 14 35 chr12 76897175 76897318 -44360212 - ID_B1 SINE B4 -1 223 84 1 1171 540 205 7 11 chr12 76897380 76897510 -44360020 - B1F SINE Alu -9 141 7 1 1171 966 162 135 0 chr12 76897614 76897799 -44359731 - B3 SINE B2 -6 210 1 1 1171 193 386 0 14 chr12 76897816 76897887 -44359643 + MIRm SINE MIR 203 272 -4 1 1171 2157 232 33 23 chr12 76897977 76898493 -44359037 + RLTR11A2 LTR ERVK 7 527 0 1 1171 409 220 41 107 chr12 76898543 76898665 -44358865 + PB1D9 SINE Alu 6 119 -1 1 1171 418 266 14 41 chr12 76898846 76898991 -44358539 - L1M2 LINE L1 -822 5478 5338 1 1171 405 0 0 0 chr12 76898997 76899042 -44358488 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1 1171 1134 64 0 0 chr12 76899044 76899185 -44358345 - B1_Mus1 SINE Alu -6 142 2 1 1171 1292 82 3 6 chr12 76899338 76899655 -44357875 + (TCTCC)n Simple_repeat Simple_repeat 1 316 0 1 1171 434 260 0 0 chr12 76899748 76899852 -44357678 + B1F2 SINE Alu 45 148 -1 1 1171 581 230 111 0 chr12 76899858 76899993 -44357537 + ID_B1 SINE B4 73 222 -2 1 1171 614 239 22 0 chr12 76900065 76900198 -44357332 + B1_Mur2 SINE Alu 2 138 -11 1 1171 207 0 0 0 chr12 76900226 76900249 -44357281 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 1 1171 397 257 79 0 chr12 76900249 76900350 -44357180 + RSINE1 SINE B4 54 162 -3 1 1171 692 302 104 0 chr12 76900424 76900616 -44356914 - ID_B1 SINE B4 0 224 13 1 1171 741 237 168 68 chr12 76900621 76900933 -44356597 - L1M2 LINE L1 -1310 4833 4473 1 1171 1169 82 0 0 chr12 76900933 76901080 -44356450 - B1_Mus1 SINE Alu 0 148 2 1 1171 741 237 168 68 chr12 76901080 76901165 -44356365 - L1M2 LINE L1 -1671 4472 4396 1 1171 1298 71 53 0 chr12 76901545 76901715 -44355815 - B2_Mm1t SINE B2 -14 179 1 1 1171 334 289 19 105 chr12 76901891 76902037 -44355493 - L1_Mur3 LINE L1 -1542 4338 4201 1 1171 330 279 13 0 chr12 76902037 76902116 -44355414 - ID4_ SINE ID -2 81 2 1 1171 334 289 19 105 chr12 76902116 76902178 -44355352 - L1_Mur3 LINE L1 -1680 4200 4148 1 1171 528 217 74 8 chr12 76902193 76902314 -44355216 - MTD LTR MaLR -12 407 279 1 1171 834 292 12 33 chr12 76902294 76902535 -44354995 + MTD LTR MaLR 54 289 -130 1 1171 325 272 86 32 chr12 76902555 76902602 -44354928 - L1M2 LINE L1 -2231 3909 3858 1 1171 798 268 19 14 chr12 76902602 76902814 -44354716 - ID_B1 SINE B4 -8 216 4 1 1171 367 272 86 32 chr12 76902814 76902986 -44354544 - L1M2 LINE L1 -2285 3858 3678 1 1171 1957 157 75 45 chr12 76903058 76903484 -44354046 + RMER10A LTR ERVL 3 441 -1 1 1171 2332 99 16 0 chr12 76903503 76903825 -44353705 - ORR1A2 LTR MaLR 0 327 1 1 1171 284 286 121 0 chr12 76903883 76903974 -44353556 - L1M2 LINE L1 -2586 3557 3456 1 1171 227 253 20 130 chr12 76904131 76904231 -44353299 + MT2B LTR ERVL 158 246 -355 1 1171 509 218 26 35 chr12 76904142 76904256 -44353274 + PB1D9 SINE Alu 2 114 -6 1 1171 209 161 0 0 chr12 76904256 76904287 -44353243 + (CAG)n Simple_repeat Simple_repeat 1 31 0 1 1171 779 219 5 184 chr12 76904288 76904489 -44353041 - B3A SINE B2 -4 194 29 1 1171 832 265 40 0 chr12 76904652 76904852 -44352678 + B3 SINE B2 4 211 -5 1 1171 313 175 0 0 chr12 76904869 76904926 -44352604 + PB1D9 SINE Alu 2 58 -62 1 1171 445 277 0 38 chr12 76905645 76905750 -44351780 - ID_B1 SINE B4 -16 208 108 1 1171 1014 229 95 46 chr12 76905759 76906041 -44351489 + ORR1D2 LTR MaLR 3 345 -25 1 1171 456 292 44 15 chr12 76906066 76906271 -44351259 + L1M4 LINE L1 5172 5382 -764 1 1171 1208 48 7 0 chr12 76906279 76906425 -44351105 + B1_Mus2 SINE Alu 1 147 0 1 1171 278 67 22 0 chr12 76906427 76906472 -44351058 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1171 238 288 14 0 chr12 76906526 76906599 -44350931 + L1M4 LINE L1 5394 5467 -713 1 1171 1768 216 53 2 chr12 76906600 76906683 -44350847 - MTD LTR MaLR -1 418 333 1 1171 2323 68 48 72 chr12 76906683 76907018 -44350512 - ORR1A2 LTR MaLR 0 327 1 1 1171 1768 216 53 2 chr12 76907018 76907328 -44350202 - MTD LTR MaLR -87 332 6 1 1171 365 324 114 64 chr12 76907365 76907662 -44349868 + ORR1E LTR MaLR 43 354 -5 1 1171 447 229 0 30 chr12 76907748 76907847 -44349683 + ID_B1 SINE B4 1 96 -128 1 1171 285 284 60 0 chr12 76907876 76907943 -44349587 + RSINE1 SINE B4 61 131 -34 1 1171 601 249 57 4 chr12 76907967 76908115 -44349415 + ID_B1 SINE B4 91 256 -36 1 1171 260 254 164 0 chr12 76908400 76908522 -44349008 + L1MA6 LINE L1 5997 6138 -162 1 1171 296 246 33 0 chr12 76908659 76908720 -44348810 + MTD LTR MaLR 18 80 -341 1 1171 1176 157 294 0 chr12 76908720 76909092 -44348438 + RMER1A Other Other 549 1030 0 1 1171 1143 243 65 28 chr12 76909096 76909404 -44348126 + MTD LTR MaLR 66 375 -44 1 1171 671 257 20 77 chr12 76909468 76909688 -44347842 + B3A SINE B2 1 215 -1 1 1171 500 274 40 0 chr12 76909726 76909850 -44347680 + ID_B1 SINE B4 88 216 -8 1 1171 520 242 24 8 chr12 76909897 76910022 -44347508 + B1F SINE Alu 1 127 -22 1 1171 291 160 0 0 chr12 76910023 76910073 -44347457 + B1F SINE Alu 71 120 -29 1 1171 355 161 0 0 chr12 76910076 76910138 -44347392 + B1F SINE Alu 66 127 -22 1 1171 294 140 0 0 chr12 76910139 76910189 -44347341 + B1F SINE Alu 71 120 -29 1 1171 470 149 0 0 chr12 76910192 76910266 -44347264 + B1F SINE Alu 66 139 -10 1 1171 477 50 0 0 chr12 76910266 76910326 -44347204 + (TATG)n Simple_repeat Simple_repeat 2 61 0 1 1171 751 199 151 22 chr12 76910372 76910557 -44346973 - B3 SINE B2 -7 209 1 1 1171 429 224 12 0 chr12 76910566 76910651 -44346879 - B1_Mur2 SINE Alu -7 142 57 1 1171 242 73 24 0 chr12 76910673 76910714 -44346816 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1171 436 261 27 80 chr12 76910892 76911042 -44346488 + B1_Mur1 SINE Alu 1 142 -7 1 1171 1185 49 14 0 chr12 76911050 76911194 -44346336 + B1_Mus2 SINE Alu 1 146 -1 1 1171 1188 113 21 26 chr12 76911203 76911394 -44346136 + B2_Mm2 SINE B2 3 192 -3 1 1171 404 324 21 14 chr12 76911479 76911623 -44345907 + B4A SINE B4 1 145 -147 1 1171 328 271 59 93 chr12 76911839 76912129 -44345401 - RLTR15 LTR ERVK -50 478 53 1 1171 1338 69 5 91 chr12 76912129 76912337 -44345193 - B2_Mm1a SINE B2 -3 190 1 1 1171 325 291 113 111 chr12 76912337 76912535 -44344995 - RLTR15 LTR ERVK -340 188 10 1 1171 389 226 65 9 chr12 76912527 76912634 -44344896 - RSINE1 SINE B4 -51 114 2 1 1171 220 351 0 0 chr12 76912878 76912935 -44344595 - ID SINE ID -162 62 6 1 1171 480 35 0 0 chr12 76913054 76913112 -44344418 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 1 1171 1305 103 33 0 chr12 76913141 76913325 -44344205 - B2_Mm2 SINE B2 -4 191 2 1 1171 621 256 43 24 chr12 76913664 76913872 -44343658 - ID_B1 SINE B4 -10 214 3 1 1171 374 286 8 82 chr12 76913901 76913918 -44343612 - ID_B1 SINE B4 -9 215 103 1 1171 570 238 9 0 chr12 76913918 76914023 -44343507 - B1F SINE Alu -22 127 22 1 1171 946 167 0 0 chr12 76914064 76914208 -44343322 + B1_Mur4 SINE Alu 1 144 -6 1 1171 195 0 86 0 chr12 76914231 76914266 -44343264 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1 1171 1174 37 0 0 chr12 76914266 76914400 -44343130 - B1_Mus2 SINE Alu -13 134 1 1 1171 632 254 0 8 chr12 76914405 76914536 -44342994 - B3 SINE B2 -1 215 86 1 1171 404 248 93 28 chr12 76914590 76914698 -44342832 - B3A SINE B2 -83 115 1 1 1171 477 232 32 13 chr12 76914703 76914820 -44342710 - PB1D10 SINE Alu -3 124 1 1 1171 502 266 71 7 chr12 76914832 76914972 -44342558 - B1F SINE Alu 0 149 1 1 1171 730 263 45 6 chr12 76915131 76915307 -44342223 + B3 SINE B2 28 210 -6 1 1171 262 308 50 43 chr12 76916067 76916206 -44341324 - MER117 DNA MER1_type -1 196 57 1 1171 229 299 51 86 chr12 76916308 76916425 -44341105 - RMER20B LTR ERVK -128 499 387 1 1171 307 271 0 41 chr12 76916569 76916642 -44340888 - ID4 SINE ID -13 70 1 1 1171 639 252 7 20 chr12 76916728 76916898 -44340632 + ID_B1 SINE B4 2 164 -128 1 1171 566 113 10 0 chr12 76917506 76917603 -44339927 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1171 1064 261 13 33 chr12 76917603 76917904 -44339626 - Lx6 LINE L1 -47 7413 7119 1 1171 35 78 0 0 chr12 76917919 76917996 -44339534 + AT_rich Low_complexity Low_complexity 1 77 0 1 1171 730 247 101 5 chr12 76917996 76918195 -44339335 - ID_B1 SINE B4 -6 218 1 1 1171 23 0 0 0 chr12 76918808 76918831 -44338699 + GC_rich Low_complexity Low_complexity 1 23 0 1 1171 21 82 0 0 chr12 76919240 76919289 -44338241 + GC_rich Low_complexity Low_complexity 1 49 0 1 1171 384 308 92 0 chr12 76920954 76921074 -44336456 - ID_B1 SINE B4 -3 221 91 1 1171 208 329 11 99 chr12 76921426 76921517 -44336013 - MIRm SINE MIR -1 275 193 1 1171 236 250 0 19 chr12 76921835 76921888 -44335642 - PB1 SINE Alu 0 127 76 1 1171 196 309 184 60 chr12 76922076 76922358 -44335172 + L2a LINE L2 2975 3291 -135 1 1171 572 252 57 0 chr12 76922431 76922554 -44334976 - ID_B1 SINE B4 -1 223 94 1 1171 213 292 0 0 chr12 76922566 76922614 -44334916 + L2a LINE L2 3348 3395 -31 1 1171 422 219 95 106 chr12 76923496 76923663 -44333867 + ID_B1 SINE B4 80 250 -42 1 1171 294 29 0 0 chr12 76923766 76923801 -44333729 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1171 351 253 9 27 chr12 76923809 76924039 -44333491 + (CATA)n Simple_repeat Simple_repeat 1 225 0 1 1171 1167 74 0 0 chr12 76924277 76924425 -44333105 - B1_Mus1 SINE Alu 0 148 1 1 1171 399 331 103 49 chr12 76924447 76924499 -44333031 - B3A SINE B2 0 198 150 1 1171 342 67 0 0 chr12 76924499 76924544 -44332986 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1171 399 331 103 49 chr12 76924544 76924675 -44332855 - B3A SINE B2 -49 149 6 1 1171 416 330 0 0 chr12 76924721 76924830 -44332700 - PB1 SINE Alu -18 109 1 1 1171 21 36 0 0 chr12 76925040 76925068 -44332462 + AT_rich Low_complexity Low_complexity 1 28 0 1 1171 284 102 0 20 chr12 76925068 76925118 -44332412 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1171 308 169 95 40 chr12 76925128 76925202 -44332328 - B4 SINE B4 -201 91 14 1 1171 21 36 0 0 chr12 76925219 76925247 -44332283 + AT_rich Low_complexity Low_complexity 1 28 0 1 1171 613 240 6 55 chr12 76925300 76925463 -44332067 - RSINE1 SINE B4 0 165 11 1 1171 297 203 109 0 chr12 76925785 76925849 -44331681 - MLT1A1 LTR MaLR -314 94 24 1 1171 628 259 6 24 chr12 76926326 76926492 -44331038 - RSINE1 SINE B4 0 165 3 1 1171 210 224 0 0 chr12 76926641 76926690 -44330840 + CT-rich Low_complexity Low_complexity 3 51 0 1 1171 349 303 0 22 chr12 76926704 76926795 -44330735 - PB1D10 SINE Alu -15 102 14 1 1171 352 311 25 25 chr12 76926785 76926907 -44330623 + ID_B1 SINE B4 95 216 -8 1 1171 273 57 0 0 chr12 76926907 76926942 -44330588 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 1 1171 264 204 20 0 chr12 76927021 76927070 -44330460 + RSINE1 SINE B4 92 141 -24 1 1171 355 156 62 38 chr12 76927820 76927900 -44329630 + ID4_ SINE ID 2 83 0 1 1171 224 326 0 33 chr12 76929350 76929442 -44328088 + MIRb SINE MIR 14 102 -166 1 1171 244 180 104 73 chr12 76929612 76929708 -44327822 - MTEa LTR MaLR -113 266 168 1 1171 627 149 54 0 chr12 76929802 76929970 -44327560 + CT-rich Low_complexity Low_complexity 1 177 0 1 1171 654 146 47 6 chr12 76929998 76930170 -44327360 + CT-rich Low_complexity Low_complexity 2 180 0 1 1171 693 132 28 28 chr12 76930191 76930371 -44327159 + CT-rich Low_complexity Low_complexity 1 180 0 1 1171 234 0 0 0 chr12 76930376 76930402 -44327128 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1 1171 661 276 12 52 chr12 76930455 76930627 -44326903 - MTEa LTR MaLR -199 180 16 1 1171 678 260 27 0 chr12 76931143 76931293 -44326237 + ID_B1 SINE B4 4 157 -67 1 1171 21 0 0 0 chr12 76931433 76931454 -44326076 + AT_rich Low_complexity Low_complexity 1 21 0 1 1171 674 183 0 105 chr12 76931454 76931625 -44325905 - RLTR20C LTR ERVK -2 576 424 1 1171 723 212 143 25 chr12 76931624 76931861 -44325669 - RLTR20C LTR ERVK -222 312 48 1 1171 830 142 0 36 chr12 76931904 76932043 -44325487 - B1_Mus2 SINE Alu -13 134 1 1 1171 607 260 75 37 chr12 76932148 76932336 -44325194 - B3A SINE B2 -1 197 3 1 1171 210 274 271 12 chr12 76932350 76932435 -44325095 - PB1 SINE Alu -10 117 11 1 1171 966 248 19 0 chr12 76932459 76932665 -44324865 + B3 SINE B2 1 210 -6 1 1171 466 250 203 28 chr12 76933102 76933279 -44324251 - ID_B1 SINE B4 -1 223 16 1 1171 236 284 29 19 chr12 76933297 76933329 -44324201 - BC1_Mm scRNA scRNA -25 127 94 1 1171 180 0 0 0 chr12 76933329 76933349 -44324181 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 1 1171 270 269 5 3 chr12 76933349 76933420 -44324110 - ID4_ SINE ID -59 93 23 1 1171 557 167 156 67 chr12 76933476 76933611 -44323919 + B1_Mus1 SINE Alu 2 148 0 1 1171 379 174 23 0 chr12 76933633 76933719 -44323811 + (ATGGTG)n Simple_repeat Simple_repeat 4 91 0 1 1171 359 253 33 11 chr12 76933722 76933814 -44323716 - PB1D10 SINE Alu -15 102 9 1 1171 647 206 32 0 chr12 76933896 76934022 -44323508 + RSINE1 SINE B4 2 131 -34 1 1171 23 54 0 0 chr12 76934039 76934076 -44323454 + AT_rich Low_complexity Low_complexity 1 37 0 1 1171 571 152 5 53 chr12 76934138 76934326 -44323204 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1171 722 111 0 62 chr12 76934348 76934540 -44322990 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1171 204 143 0 0 chr12 76934974 76935016 -44322514 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1171 345 289 37 37 chr12 76935032 76935140 -44322390 + ID_B1 SINE B4 1 108 -116 1 1171 385 307 208 10 chr12 76935222 76935429 -44322101 + MIR SINE MIR 12 259 -3 1 1171 388 227 20 30 chr12 76935817 76935916 -44321614 - ID4_ SINE ID -54 98 1 1 1171 560 190 25 25 chr12 76936552 76936671 -44320859 - B1F2 SINE Alu -17 132 14 1 1171 459 246 55 85 chr12 76936681 76936881 -44320649 - B3A SINE B2 0 198 5 1 1171 537 205 77 0 chr12 76937059 76937176 -44320354 - B1F2 SINE Alu -11 138 13 1 1171 351 0 0 0 chr12 76937714 76937753 -44319777 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1171 209 191 0 0 chr12 76938891 76938933 -44318597 + GA-rich Low_complexity Low_complexity 2 43 0 1 1171 235 80 19 39 chr12 76938987 76939039 -44318491 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 1 146 1625 204 45 55 chr12 76939045 76939449 -44318081 + MTD LTR MaLR 20 419 0 1 1172 1140 284 23 0 chr12 76939450 76939760 -44317770 - RCHARR1 DNA MER1_type -41 933 617 1 1172 544 245 100 7 chr12 76940002 76940142 -44317388 - ID_B1 SINE B4 0 224 72 1 1172 857 159 0 14 chr12 76940993 76941133 -44316397 + B1_Mur4 SINE Alu 2 139 -11 1 1172 337 239 98 63 chr12 76941167 76941310 -44316220 + B1_Mur1 SINE Alu 2 149 0 1 1172 289 220 195 76 chr12 76941336 76941454 -44316076 + ID_B1 SINE B4 88 219 -5 1 1172 964 228 5 9 chr12 76941482 76941695 -44315835 + B3 SINE B2 1 212 -4 1 1172 395 325 13 142 chr12 76942395 76942621 -44314909 + RMER30 DNA MER1_type 2 198 -4 1 1172 25 31 0 0 chr12 76942820 76942852 -44314678 + AT_rich Low_complexity Low_complexity 1 32 0 1 1172 204 97 0 0 chr12 76942894 76942925 -44314605 + (TGG)n Simple_repeat Simple_repeat 2 32 0 1 1172 407 123 0 15 chr12 76942927 76942993 -44314537 - B1_Mur2 SINE Alu -39 110 46 1 1172 204 236 18 35 chr12 76943717 76943774 -44313756 + CT-rich Low_complexity Low_complexity 1 56 0 1 1172 769 182 7 40 chr12 76943780 76943929 -44313601 - B1_Mur3 SINE Alu -4 145 2 1 1172 475 246 53 0 chr12 76943991 76944105 -44313425 - ID_B1 SINE B4 -2 222 103 1 1172 289 214 179 0 chr12 76944133 76944217 -44313313 + URR1A DNA MER1_type 1 99 -127 1 1172 268 206 137 0 chr12 76944644 76944717 -44312813 + B1F SINE Alu 6 88 -61 1 1172 595 219 82 131 chr12 76944954 76945322 -44312208 - RLTR11A2 LTR ERVK -194 334 16 1 1172 854 232 14 19 chr12 76945739 76945946 -44311584 - B3 SINE B2 -6 210 5 1 1172 290 200 69 132 chr12 76946521 76946665 -44310865 + B4A SINE B4 1 135 -157 1 1172 207 0 0 0 chr12 76946917 76946940 -44310590 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1172 477 260 73 0 chr12 76947111 76947234 -44310296 - RSINE1 SINE B4 -4 161 30 1 1172 254 106 21 0 chr12 76947476 76947523 -44310007 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 1 1172 191 373 47 0 chr12 76947697 76947847 -44309683 - MIRc SINE MIR -85 183 27 1 1172 798 106 0 77 chr12 76947914 76948057 -44309473 + B1_Mus2 SINE Alu 9 140 -7 1 1172 425 248 30 37 chr12 76948286 76948420 -44309110 + RSINE1 SINE B4 1 133 -32 1 1172 584 267 25 56 chr12 76949252 76949450 -44308080 + B3A SINE B2 6 197 -1 1 1172 896 144 22 0 chr12 76949981 76950120 -44307410 - B1_Mus2 SINE Alu -4 143 2 1 1172 310 286 34 112 chr12 76950870 76951075 -44306455 - L1MB3 LINE L1 -95 6088 5900 1 1172 555 154 58 0 chr12 76951630 76951734 -44305796 + B1F2 SINE Alu 32 141 -8 1 1172 399 273 115 0 chr12 76952171 76952310 -44305220 - B4A SINE B4 0 292 138 1 1172 463 227 0 52 chr12 76952775 76952891 -44304639 - B1_Mur3 SINE Alu 0 149 40 1 1172 853 130 8 0 chr12 76953182 76953313 -44304217 - B1_Mur3 SINE Alu -6 143 12 1 1172 288 152 0 0 chr12 76953687 76953753 -44303777 + GA-rich Low_complexity Low_complexity 1 66 0 1 1172 212 329 12 12 chr12 76954013 76954096 -44303434 - ID4_ SINE ID 0 83 1 1 1172 306 0 0 0 chr12 76955706 76955740 -44301790 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1172 324 0 0 0 chr12 76955740 76955775 -44301755 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 1172 291 54 0 0 chr12 76955786 76955823 -44301707 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1 1172 211 214 0 0 chr12 76955823 76955865 -44301665 - B1_Mm SINE Alu -11 136 95 1 1172 387 0 0 0 chr12 76955867 76955910 -44301620 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1172 369 0 0 0 chr12 76957071 76957112 -44300418 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 1172 1262 25 0 0 chr12 76957112 76957271 -44300259 - B2_Mm1a SINE B2 -33 160 2 1 1172 440 234 46 23 chr12 76957295 76957426 -44300104 + RSINE1 SINE B4 2 135 -30 1 1172 288 91 0 0 chr12 76957793 76957837 -44299693 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 1 1172 255 381 0 9 chr12 76957844 76957950 -44299580 + CT-rich Low_complexity Low_complexity 4 108 0 1 1172 648 196 41 14 chr12 76958071 76958216 -44299314 - B1_Mur1 SINE Alu 0 149 1 1 1172 681 116 15 30 chr12 76958950 76959083 -44298447 + CT-rich Low_complexity Low_complexity 3 133 0 1 1172 828 155 42 0 chr12 76959090 76959232 -44298298 - B1_Mur4 SINE Alu -2 148 1 1 1172 232 229 33 0 chr12 76959326 76959387 -44298143 + PB1D10 SINE Alu 47 109 -8 1 1172 501 115 0 0 chr12 76959502 76959598 -44297932 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1 1172 444 273 79 0 chr12 76959616 76959755 -44297775 - RSINE1 SINE B4 -15 150 1 1 1172 284 280 60 78 chr12 76960088 76960204 -44297326 + ID_B1 SINE B4 2 115 -109 1 1172 514 203 81 149 chr12 76960435 76960609 -44296921 + RSINE1 SINE B4 4 165 0 1 1172 3335 11 0 0 chr12 76960653 76961020 -44296510 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1172 626 185 100 36 chr12 76961608 76961736 -44295794 + B1_Mur4 SINE Alu 2 141 -9 1 1172 194 0 39 0 chr12 76961736 76961762 -44295768 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1172 626 185 100 36 chr12 76961762 76961773 -44295757 + B1_Mur4 SINE Alu 142 150 0 1 1172 684 119 0 0 chr12 76962091 76962200 -44295330 + (TG)n Simple_repeat Simple_repeat 1 109 0 1 1172 627 14 0 0 chr12 76962590 76962662 -44294868 + (TTCTC)n Simple_repeat Simple_repeat 2 73 0 1 1172 183 175 0 0 chr12 76962662 76962686 -44294844 + T-rich Low_complexity Low_complexity 17 40 0 1 1172 1159 82 0 0 chr12 76962686 76962833 -44294697 - B1_Mus2 SINE Alu 0 147 1 1 1172 183 175 0 0 chr12 76962833 76962848 -44294682 + T-rich Low_complexity Low_complexity 2 16 0 1 1172 22 35 0 0 chr12 76962861 76962890 -44294640 + AT_rich Low_complexity Low_complexity 1 29 0 1 1172 557 264 58 6 chr12 76962912 76963068 -44294462 - RSINE1 SINE B4 0 165 2 1 1172 1076 194 69 5 chr12 76963473 76963675 -44293855 - B3 SINE B2 -1 215 1 1 1172 2666 137 29 0 chr12 76964093 76964502 -44293028 - MTC LTR MaLR 0 421 1 1 1172 585 242 32 51 chr12 76964567 76964724 -44292806 + RSINE1 SINE B4 12 165 0 1 1172 224 276 65 84 chr12 76964599 76964753 -44292777 + B3A SINE B2 47 197 -1 1 1172 419 264 9 0 chr12 76964953 76965059 -44292471 - PB1 SINE Alu 0 127 21 1 1172 227 328 59 0 chr12 76965071 76965190 -44292340 - L2 LINE L2 -587 2832 2707 1 1172 480 293 7 15 chr12 76965190 76965325 -44292205 - RSINE1 SINE B4 -21 144 11 1 1172 25 31 0 0 chr12 76965396 76965428 -44292102 + AT_rich Low_complexity Low_complexity 1 32 0 1 1172 420 286 71 0 chr12 76965434 76965560 -44291970 - B1F SINE Alu -14 135 1 1 1172 321 362 73 50 chr12 76966090 76966570 -44290960 - L2 LINE L2 -654 2765 2275 1 1172 630 277 106 24 chr12 76966907 76967114 -44290416 + ID_B1 SINE B4 1 224 0 1 1172 191 103 0 25 chr12 76967134 76967174 -44290356 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1172 638 245 147 0 chr12 76968432 76968616 -44288914 + B3 SINE B2 2 212 -4 1 1172 465 284 15 98 chr12 76968772 76968975 -44288555 + ID_B1 SINE B4 28 213 -11 1 1172 562 206 14 62 chr12 76968845 76968990 -44288540 + B1_Mur1 SINE Alu 12 149 0 1 1172 325 217 24 18 chr12 76969150 76969255 -44288275 - L1MB8 LINE L1 -382 5962 5860 1 1172 482 348 20 5 chr12 76969325 76969524 -44288006 - MER58A DNA MER1_type -19 205 4 1 1172 192 254 91 0 chr12 76969544 76969599 -44287931 - MIRb SINE MIR -79 189 130 1 1172 297 0 0 0 chr12 76970934 76970967 -44286563 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1172 311 250 16 0 chr12 76970968 76971032 -44286498 + MER21B LTR ERV1 32 96 -767 1 1172 612 236 49 0 chr12 76971044 76971167 -44286363 - RSINE1 SINE B4 0 165 37 1 1172 270 0 0 0 chr12 76971241 76971271 -44286259 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1172 210 143 0 0 chr12 76971390 76971425 -44286105 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1172 1286 104 11 16 chr12 76971770 76971956 -44285574 - B2_Mm1t SINE B2 -8 185 1 1 1172 26 50 0 0 chr12 76971964 76972004 -44285526 + AT_rich Low_complexity Low_complexity 1 40 0 1 1172 820 239 104 0 chr12 76972004 76972205 -44285325 - ID_B1 SINE B4 -1 223 2 1 1172 192 77 0 0 chr12 76972275 76972301 -44285229 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1172 227 235 137 68 chr12 76972317 76972390 -44285140 + ID4_ SINE ID 1 78 -5 1 1172 351 0 0 0 chr12 76972470 76972509 -44285021 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1172 189 0 0 0 chr12 76972509 76972529 -44285001 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1172 1078 287 90 6 chr12 76972659 76973016 -44284514 + MTD LTR MaLR 18 404 -15 1 1172 696 152 59 22 chr12 76973293 76973428 -44284102 + B1_Mur2 SINE Alu 2 141 -8 1 1172 2496 151 42 7 chr12 76973520 76973927 -44283603 + MTC LTR MaLR 1 421 0 1 1172 633 214 24 67 chr12 76973951 76974116 -44283414 - B3A SINE B2 -3 195 38 1 1172 25 51 0 0 chr12 76976047 76976086 -44281444 + AT_rich Low_complexity Low_complexity 1 39 0 1 1172 596 280 6 12 chr12 76976817 76976987 -44280543 - B4 SINE B4 -123 169 1 1 1172 253 269 248 70 chr12 76977062 76977506 -44280024 - L2 LINE L2 -1249 2170 1648 1 1172 672 253 17 29 chr12 76977614 76977789 -44279741 + ID_B1 SINE B4 45 217 -7 1 1172 243 0 0 0 chr12 76977789 76977816 -44279714 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1172 726 261 81 79 chr12 76977875 76978250 -44279280 - MTE2a LTR MaLR 0 419 1 1 1172 271 174 0 0 chr12 76978433 76978479 -44279051 - ORR1D1 LTR MaLR 0 374 329 1 1172 222 296 0 0 chr12 76978830 76978884 -44278646 - MIRb SINE MIR -164 104 51 1 1172 518 229 0 0 chr12 76979442 76979560 -44277970 + ID_B1 SINE B4 92 209 -15 1 1172 431 257 19 9 chr12 76979940 76980046 -44277484 - PB1 SINE Alu -20 107 1 1 1172 278 287 42 104 chr12 76980046 76980128 -44277402 - ID SINE ID -143 81 9 1 1172 606 280 62 11 chr12 76980160 76980337 -44277193 - B3A SINE B2 -10 188 3 1 1172 410 297 78 0 chr12 76980345 76980473 -44277057 - B1F2 SINE Alu -1 148 11 1 1172 197 0 71 0 chr12 76981230 76981258 -44276272 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1172 268 200 38 9 chr12 76981726 76981832 -44275698 + (TA)n Simple_repeat Simple_repeat 1 109 0 1 1172 643 202 24 16 chr12 76981834 76981960 -44275570 - B1_Mur1 SINE Alu 0 149 23 1 1172 538 237 7 75 chr12 76982208 76982354 -44275176 + B1F SINE Alu 1 136 -13 1 1172 1759 101 84 84 chr12 76982357 76982703 -44274827 - ORR1B1 LTR MaLR -8 386 41 1 1172 547 197 346 0 chr12 76983488 76983645 -44273885 + B3 SINE B2 1 211 -5 1 1172 559 241 49 6 chr12 76983869 76984032 -44273498 + MER2 DNA MER2_type 112 281 -64 1 1172 1416 123 61 0 chr12 76984158 76984370 -44273160 - URR1B DNA MER1_type 0 225 1 1 1172 1496 64 16 0 chr12 76984517 76984704 -44272826 - B2_Mm2 SINE B2 -5 190 1 1 1172 317 331 22 7 chr12 76984778 76984915 -44272615 - L1ME3A LINE L1 -4 6169 6031 1 1172 775 154 7 14 chr12 76985434 76985572 -44271958 + B1_Mur2 SINE Alu 1 137 -12 1 1172 477 0 0 0 chr12 76985619 76985672 -44271858 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1172 423 0 0 0 chr12 76985701 76985748 -44271782 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 1172 805 86 148 0 chr12 76985751 76985879 -44271651 - B2_Mm2 SINE B2 -42 153 7 1 1172 2144 248 23 11 chr12 76985897 76986337 -44271193 - Lx6 LINE L1 -20 7440 7002 1 1172 387 0 0 0 chr12 76986337 76986380 -44271150 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1172 2144 248 23 11 chr12 76986380 76986461 -44271069 - Lx6 LINE L1 -459 7001 6914 1 1172 361 250 121 55 chr12 76986481 76986663 -44270867 - L1M5 LINE L1 -853 5293 5100 1 1172 376 274 0 64 chr12 76986664 76986773 -44270757 + PB1D10 SINE Alu 10 111 -6 1 1172 441 281 37 0 chr12 76986970 76987105 -44270425 + ID_B1 SINE B4 82 221 -3 1 1172 222 37 0 0 chr12 76987117 76987144 -44270386 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1172 322 343 9 18 chr12 76987487 76987597 -44269933 - PB1 SINE Alu -17 110 2 1 1172 427 319 13 10 chr12 76987873 76988055 -44269475 - B3A SINE B2 0 216 32 1 1172 505 279 29 41 chr12 76988048 76988220 -44269310 - B3A SINE B2 -25 173 4 1 1172 627 292 56 6 chr12 76988257 76988419 -44269111 + B3 SINE B2 1 171 -45 1 1172 279 79 0 0 chr12 76988419 76988457 -44269073 + (CATA)n Simple_repeat Simple_repeat 4 41 0 1 1172 627 286 25 50 chr12 76988457 76988493 -44269037 + B3 SINE B2 155 194 -1 1 1172 267 54 0 0 chr12 76988521 76988558 -44268972 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1172 410 250 36 18 chr12 76989583 76989693 -44267837 - PB1D9 SINE Alu -7 113 2 1 1172 751 254 107 122 chr12 76989763 76990148 -44267382 - MTEa LTR MaLR 0 379 1 1 1172 456 237 24 55 chr12 76990203 76990368 -44267162 - RSINE1 SINE B4 -3 162 3 1 1172 370 256 0 35 chr12 76990583 76990668 -44266862 - RSINE1 SINE B4 -17 148 67 1 1172 282 193 0 0 chr12 76990776 76990833 -44266697 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1172 1210 92 75 6 chr12 76990849 76991023 -44266507 - B2_Mm2 SINE B2 -9 186 1 1 1172 693 69 0 10 chr12 76991025 76991127 -44266403 - Lx LINE L1 -16 6638 6538 1 1172 186 43 0 0 chr12 76991127 76991150 -44266380 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 1 1172 286 267 0 26 chr12 76992129 76992206 -44265324 + B1_Mur1 SINE Alu 73 147 -2 1 1172 201 100 24 24 chr12 76992206 76992247 -44265283 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 1 1172 592 276 7 33 chr12 76992249 76992399 -44265131 + RSINE1 SINE B4 3 148 -17 1 1172 493 288 131 17 chr12 76992567 76992857 -44264673 - MER63C DNA AcHobo -76 854 532 1 1172 212 56 93 0 chr12 76992857 76992911 -44264619 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 1 1172 1148 69 0 7 chr12 76992911 76993057 -44264473 - B1_Mm SINE Alu -1 146 2 1 1172 183 42 0 0 chr12 76993059 76993083 -44264447 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1172 438 235 39 0 chr12 76993302 76993404 -44264126 + PB1D10 SINE Alu 4 109 -8 1 1172 639 121 0 0 chr12 76994233 76994332 -44263198 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1 1172 770 139 101 0 chr12 76994379 76994508 -44263022 + B1_Mus1 SINE Alu 6 147 -1 1 1172 748 212 21 21 chr12 76994512 76994705 -44262825 + B2_Mm2 SINE B2 3 195 0 1 1172 216 0 0 0 chr12 76994853 76994877 -44262653 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1172 257 235 118 0 chr12 76995303 76995405 -44262125 - PB1D9 SINE Alu 0 120 7 1 1172 729 252 64 5 chr12 76995412 76995615 -44261915 - B3 SINE B2 0 216 2 1 1172 278 284 25 49 chr12 76996599 76996721 -44260809 + RSINE1 SINE B4 31 149 -16 1 1172 269 70 47 0 chr12 76996824 76996867 -44260663 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1 1172 612 198 0 119 chr12 76996883 76997026 -44260504 - B1_Mur3 SINE Alu -5 144 19 1 1172 365 195 0 49 chr12 76997091 76997172 -44260358 - B3 SINE B2 -103 113 37 1 1172 279 0 0 0 chr12 76997219 76997250 -44260280 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1172 462 159 0 0 chr12 76997297 76997385 -44260145 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 1172 1205 119 60 43 chr12 76997767 76998061 -44259469 - ORR1B2 LTR MaLR -8 359 2 1 1172 230 389 58 0 chr12 76998302 76998441 -44259089 + MER58A DNA MER1_type 51 197 -27 1 1172 200 250 0 0 chr12 76998682 76998726 -44258804 - MIRc SINE MIR -124 144 101 1 1172 241 337 23 11 chr12 76999346 76999433 -44258097 - PB1 SINE Alu -39 88 1 1 1172 557 230 22 7 chr12 76999648 76999784 -44257746 + B1F SINE Alu 12 149 0 1 1172 529 331 122 37 chr12 77000665 77001255 -44256275 - L1MEf LINE L1 -3368 2778 2139 1 1172 355 290 114 19 chr12 77001399 77001557 -44255973 - L1MEf LINE L1 -4224 2018 1846 1 1172 499 175 0 0 chr12 77001580 77001660 -44255870 + Lx7 LINE L1 7535 7614 -82 2 1172 877 87 0 0 chr12 77001680 77001806 -44255724 - B1_Mus1 SINE Alu 0 148 23 3 1172 647 221 35 28 chr12 77001863 77002007 -44255523 + B1_Mur2 SINE Alu 5 149 0 4 1172 219 146 0 0 chr12 77002007 77002048 -44255482 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1172 25 31 0 0 chr12 77002187 77002219 -44255311 + AT_rich Low_complexity Low_complexity 1 32 0 6 1172 449 344 72 38 chr12 77002355 77002618 -44254912 - B4A SINE B4 -20 272 1 7 1172 297 0 0 0 chr12 77002623 77002656 -44254874 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1172 1129 51 0 0 chr12 77002656 77002794 -44254736 - B1_Mus1 SINE Alu -9 139 2 9 1172 527 268 52 81 chr12 77002854 77003027 -44254503 - B3A SINE B2 -13 203 36 1 1172 765 253 131 33 chr12 77003193 77003528 -44254002 - RLTR9A LTR ERVK 0 368 1 1 1172 22 35 0 0 chr12 77004024 77004053 -44253477 + AT_rich Low_complexity Low_complexity 1 29 0 1 1172 611 57 0 11 chr12 77004234 77004323 -44253207 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1172 227 309 0 36 chr12 77004466 77004550 -44252980 - RCHARR1 DNA MER1_type -29 945 865 1 1172 295 278 14 0 chr12 77004584 77004656 -44252874 + RSINE1 SINE B4 26 98 -67 1 1172 330 138 0 0 chr12 77004728 77004786 -44252744 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1172 556 225 23 0 chr12 77005516 77005645 -44251885 + ID_B1 SINE B4 89 220 -4 1 1172 398 253 0 0 chr12 77006012 77006091 -44251439 + B1F SINE Alu 1 79 -70 1 1172 307 282 31 106 chr12 77006656 77006882 -44250648 + B3 SINE B2 3 211 -5 1 1172 651 216 76 97 chr12 77006926 77007111 -44250419 + B3A SINE B2 2 182 -16 2 1172 363 73 0 0 chr12 77007506 77007561 -44249969 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1172 1205 98 48 11 chr12 77008198 77008384 -44249146 - B2_Mm1t SINE B2 0 193 1 2 1172 619 215 14 20 chr12 77008437 77008584 -44248946 - RSINE1 SINE B4 -17 148 3 2 1172 381 196 174 0 chr12 77008985 77009077 -44248453 - PB1D10 SINE Alu -9 108 1 2 1172 965 111 31 0 chr12 77009141 77009303 -44248227 - URR1B DNA MER1_type 0 225 59 2 1172 210 188 0 0 chr12 77010429 77010461 -44247069 - PB1D9 SINE Alu -88 32 1 2 1172 288 0 0 0 chr12 77010624 77010656 -44246874 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1172 223 295 70 92 chr12 77010680 77010711 -44246819 - B4A SINE B4 -68 224 91 2 1172 338 290 0 57 chr12 77010711 77010817 -44246713 - PB1D10 SINE Alu -12 105 6 2 1172 706 236 43 11 chr12 77012236 77012424 -44245106 - B4A SINE B4 -43 249 56 3 1172 704 312 45 10 chr12 77012440 77012811 -44244719 - L1MB8 LINE L1 -109 6065 5674 3 1172 22 70 0 0 chr12 77012962 77013005 -44244525 + AT_rich Low_complexity Low_complexity 1 43 0 3 1172 230 293 0 0 chr12 77013088 77013146 -44244384 - PB1D7 SINE Alu -61 59 2 3 1172 25 0 0 0 chr12 77013188 77013213 -44244317 + AT_rich Low_complexity Low_complexity 1 25 0 3 1172 277 342 78 26 chr12 77013718 77013871 -44243659 + RMER30 DNA MER1_type 42 202 0 3 1172 839 254 0 6 chr12 77014150 77014332 -44243198 + B3 SINE B2 4 184 -32 3 1172 479 287 50 37 chr12 77014341 77014638 -44242892 - RLTR15 LTR ERVK -14 345 45 3 1172 708 182 0 0 chr12 77014853 77014990 -44242540 + GA-rich Low_complexity Low_complexity 1 137 0 3 1172 515 244 130 0 chr12 77015104 77015227 -44242303 - B1_Mur3 SINE Alu -10 139 1 3 1172 387 0 0 0 chr12 77015350 77015393 -44242137 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1172 425 247 31 0 chr12 77015396 77015493 -44242037 - PB1D10 SINE Alu -11 106 7 4 1172 269 310 8 65 chr12 77015512 77015636 -44241894 - PB1D10 SINE Alu 0 117 1 4 1172 537 278 33 7 chr12 77017196 77017348 -44240182 - RSINE1 SINE B4 -7 158 3 4 1172 225 0 0 0 chr12 77018199 77018224 -44239306 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 1172 1147 58 0 0 chr12 77018224 77018361 -44239169 - B1_Mus2 SINE Alu -9 138 2 4 1172 1464 204 14 0 chr12 77018406 77018685 -44238845 + Lx5 LINE L1 6760 7042 -8 4 1172 22 35 0 0 chr12 77018747 77018776 -44238754 + AT_rich Low_complexity Low_complexity 1 29 0 4 1172 656 210 71 21 chr12 77018815 77018956 -44238574 - B1_Mur2 SINE Alu 0 149 2 4 1172 371 38 19 0 chr12 77018960 77019013 -44238517 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1172 670 242 34 0 chr12 77019019 77019168 -44238362 - B3A SINE B2 -43 155 2 5 1172 460 244 238 0 chr12 77019181 77019353 -44238177 - ID_B1 SINE B4 -8 216 4 5 1172 28 29 0 0 chr12 77019748 77019783 -44237747 + AT_rich Low_complexity Low_complexity 1 35 0 5 1172 24 0 0 0 chr12 77020587 77020611 -44236919 + AT_rich Low_complexity Low_complexity 1 24 0 5 1172 449 145 17 0 chr12 77020814 77020931 -44236599 + (TCTG)n Simple_repeat Simple_repeat 4 122 0 5 1172 378 283 9 19 chr12 77020985 77021093 -44236437 + ID_B1 SINE B4 100 206 -18 5 1172 308 270 111 17 chr12 77020988 77021105 -44236425 + B1F SINE Alu 22 149 0 5 1172 676 259 57 8 chr12 77021180 77021386 -44236144 + B3A SINE B2 3 212 -4 5 1172 893 273 62 36 chr12 77022927 77023231 -44234299 + MER2 DNA MER2_type 2 313 -32 5 1172 585 126 108 0 chr12 77023296 77023407 -44234123 - B1_Mur1 SINE Alu 0 149 27 5 1172 299 291 66 61 chr12 77023482 77023694 -44233836 - L1MC3 LINE L1 -131 7654 7442 6 1172 777 181 11 6 chr12 77024628 77024806 -44232724 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 1172 257 189 42 42 chr12 77025313 77025385 -44232145 - ID SINE ID -148 76 5 6 1172 1140 237 121 6 chr12 77025570 77025910 -44231620 + MTE2b LTR MaLR 1 379 0 6 1172 251 191 35 41 chr12 77027622 77027791 -44229739 + (TA)n Simple_repeat Simple_repeat 1 168 0 6 1172 225 250 0 0 chr12 77027831 77027879 -44229651 - RSINE1 SINE B4 -117 48 1 6 1172 433 256 145 0 chr12 77027930 77028047 -44229483 - RSINE1 SINE B4 -29 136 3 6 1172 37 62 0 0 chr12 77028172 77028237 -44229293 + AT_rich Low_complexity Low_complexity 1 65 0 6 1172 524 261 0 35 chr12 77029164 77029307 -44228223 + B3A SINE B2 2 139 -59 6 1172 278 266 21 11 chr12 77029384 77029447 -44228083 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1172 848 247 126 0 chr12 77029447 77029694 -44227836 - B4A SINE B4 -14 278 1 7 1172 278 266 21 11 chr12 77029694 77029725 -44227805 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1172 945 27 0 0 chr12 77029795 77029907 -44227623 + (CTG)n Simple_repeat Simple_repeat 1 112 0 7 1172 308 282 45 9 chr12 77029956 77030067 -44227463 - RSINE1 SINE B4 0 165 51 7 1172 21 0 0 0 chr12 77030560 77030581 -44226949 + AT_rich Low_complexity Low_complexity 1 21 0 7 1172 640 291 132 43 chr12 77032468 77032816 -44224714 - MTE2b LTR MaLR 0 379 1 7 1172 301 282 0 25 chr12 77033361 77033441 -44224089 - L2a LINE L2 -38 3388 3311 7 1172 189 221 56 56 chr12 77033725 77033797 -44223733 - L2a LINE L2 -536 2883 2812 7 1172 1116 187 81 24 chr12 77033806 77034174 -44223356 - RLTR22_Mur LTR ERVK 0 1848 1500 7 1172 213 167 0 0 chr12 77034498 77034552 -44222978 + CT-rich Low_complexity Low_complexity 2 55 0 7 1172 799 169 141 47 chr12 77036302 77036371 -44221159 - B3 SINE B2 -6 210 146 7 1172 1308 164 0 70 chr12 77036371 77036613 -44220917 + URR1B DNA MER1_type 1 225 0 8 1172 799 169 141 47 chr12 77036613 77036735 -44220795 - B3 SINE B2 -71 145 1 7 1172 1015 208 59 0 chr12 77036827 77037029 -44220501 - B3 SINE B2 -2 214 1 8 1172 331 238 37 12 chr12 77037543 77037624 -44219906 - B1F SINE Alu -66 83 1 8 1172 244 269 9 71 chr12 77037638 77037750 -44219780 - L1MD1 LINE L1 -8 6234 6130 8 1172 227 218 55 0 chr12 77037752 77037807 -44219723 + PB1D10 SINE Alu 52 109 -8 8 1172 25 51 0 0 chr12 77038578 77038617 -44218913 + AT_rich Low_complexity Low_complexity 1 39 0 8 1172 218 81 27 0 chr12 77038695 77038732 -44218798 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1172 490 266 26 0 chr12 77038761 77038874 -44218656 + PB1D10 SINE Alu 2 117 0 8 1172 637 215 35 7 chr12 77038876 77039021 -44218509 + B1_Mur1 SINE Alu 1 149 0 8 1172 608 232 14 0 chr12 77039227 77039369 -44218161 - B1F1 SINE Alu -1 148 5 8 1172 198 267 0 0 chr12 77041454 77041499 -44216031 + MIRc SINE MIR 80 124 -144 9 1172 207 0 0 0 chr12 77041854 77041877 -44215653 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 9 1172 631 193 54 48 chr12 77041881 77042028 -44215502 - B1_Mur3 SINE Alu 0 149 2 9 1172 234 0 0 0 chr12 77042423 77042449 -44215081 + (TC)n Simple_repeat Simple_repeat 2 27 0 9 1172 582 15 0 0 chr12 77042449 77042515 -44215015 + (TA)n Simple_repeat Simple_repeat 2 68 0 9 1172 279 217 159 0 chr12 77042679 77042748 -44214782 + RSINE1 SINE B4 3 82 -83 9 1172 519 249 129 12 chr12 77042851 77042949 -44214581 + B4A SINE B4 109 225 -67 9 1172 387 0 0 0 chr12 77042949 77042992 -44214538 + (TAA)n Simple_repeat Simple_repeat 1 43 0 9 1172 519 249 129 12 chr12 77042992 77043056 -44214474 + B4A SINE B4 226 290 -2 9 1172 211 268 36 0 chr12 77044013 77044069 -44213461 - AluG_3 SINE Alu -92 219 162 9 1172 325 311 44 0 chr12 77044136 77044226 -44213304 - MER2 DNA MER2_type -32 313 220 9 1172 423 0 0 0 chr12 77044269 77044316 -44213214 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1172 189 175 0 0 chr12 77044669 77044709 -44212821 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1172 704 261 112 71 chr12 77045137 77045459 -44212071 - MER2 DNA MER2_type 0 345 11 1 1172 960 215 35 0 chr12 77045480 77045680 -44211850 - B3 SINE B2 -9 207 1 1 1172 183 369 48 34 chr12 77046611 77046757 -44210773 + L3b LINE CR1 18 165 -317 1 1172 200 86 0 28 chr12 77048198 77048234 -44209296 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1172 586 267 30 0 chr12 77048237 77048372 -44209158 - RSINE1 SINE B4 -13 152 14 1 1172 1344 71 36 52 chr12 77048413 77048607 -44208923 - B2_Mm2 SINE B2 -4 191 1 1 1172 655 235 186 51 chr12 77048627 77048901 -44208629 - Lx8 LINE L1 0 7473 7163 1 1172 684 319 19 5 chr12 77049114 77049319 -44208211 - B4 SINE B4 0 292 85 1 1172 696 208 0 0 chr12 77049321 77049419 -44208111 + polypyrimidine Low_complexity Low_complexity 59 156 0 1 1172 944 86 0 7 chr12 77049419 77049560 -44207970 + (TTC)n Simple_repeat Simple_repeat 3 142 0 1 1172 696 208 0 0 chr12 77049560 77049615 -44207915 + polypyrimidine Low_complexity Low_complexity 4 58 0 1 1172 292 204 0 0 chr12 77049643 77049697 -44207833 - B4 SINE B4 -215 77 24 1 1172 725 162 6 0 chr12 77050674 77050847 -44206683 + (TCCA)n Simple_repeat Simple_repeat 4 177 0 1 1172 510 261 0 0 chr12 77050888 77051053 -44206477 + (TCCA)n Simple_repeat Simple_repeat 1 165 0 1 1172 887 164 7 0 chr12 77052758 77052904 -44204626 + B1_Mus1 SINE Alu 1 147 -1 1 1172 814 157 7 7 chr12 77052968 77053103 -44204427 - B1_Mur1 SINE Alu -12 137 3 1 1172 786 217 43 81 chr12 77053115 77053326 -44204204 - B3 SINE B2 -10 206 4 1 1172 256 296 12 0 chr12 77054623 77054704 -44202826 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 1172 371 21 0 20 chr12 77054704 77054753 -44202777 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1172 348 357 28 37 chr12 77054786 77055004 -44202526 - B4A SINE B4 -50 242 27 1 1172 1917 132 209 9 chr12 77055291 77055641 -44201889 - MTC LTR MaLR 0 421 2 1 1172 742 238 0 0 chr12 77056207 77056354 -44201176 + RSINE1 SINE B4 5 151 -14 1 1172 246 62 0 0 chr12 77056362 77056394 -44201136 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 1 1172 616 198 71 102 chr12 77056565 77056762 -44200768 - B3A SINE B2 -7 191 1 1 1172 215 290 0 28 chr12 77056813 77056884 -44200646 + CT-rich Low_complexity Low_complexity 2 70 0 1 1172 300 53 0 0 chr12 77057763 77057801 -44199729 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1172 278 292 11 0 chr12 77058089 77058178 -44199352 + PB1D10 SINE Alu 1 90 -27 1 1172 527 233 7 22 chr12 77058098 77058234 -44199296 + ID_B1 SINE B4 91 224 0 1 1172 256 315 0 11 chr12 77058388 77058481 -44199049 + MER103 DNA DNA 16 107 -59 1 1172 1062 97 7 0 chr12 77059053 77059198 -44198332 + B1_Mus1 SINE Alu 3 148 0 1 1172 399 307 71 40 chr12 77059299 77059523 -44198007 - B4A SINE B4 -13 279 49 1 1172 688 291 85 85 chr12 77060071 77060196 -44197334 + MTE2a LTR MaLR 2 121 -258 1 1172 2442 140 5 32 chr12 77060196 77060215 -44197315 - Lx4B LINE L1 0 7058 7043 1 1172 225 0 0 0 chr12 77060215 77060240 -44197290 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1 1172 2442 140 5 32 chr12 77060240 77060627 -44196903 - Lx4B LINE L1 -16 7042 6663 1 1172 688 278 82 62 chr12 77060627 77060878 -44196652 + MTE2a LTR MaLR 122 370 0 1 1172 375 303 135 8 chr12 77062122 77062255 -44195275 + RSINE1 SINE B4 14 163 -2 1 1172 320 80 0 0 chr12 77062285 77062335 -44195195 + B1_Mur4 SINE Alu 101 150 0 1 1172 233 136 0 70 chr12 77062335 77062406 -44195124 + A-rich Low_complexity Low_complexity 1 66 0 1 1172 258 338 0 0 chr12 77062539 77062619 -44194911 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1172 294 303 0 63 chr12 77062653 77062780 -44194750 - B4 SINE B4 -171 121 3 1 1172 1211 96 16 38 chr12 77063032 77063217 -44194313 - B2_Mm2 SINE B2 -14 181 1 1 1172 458 173 12 0 chr12 77064102 77064183 -44193347 + URR1B DNA MER1_type 3 84 -141 1 1172 366 136 0 0 chr12 77064187 77064268 -44193262 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1172 807 114 76 0 chr12 77064268 77064400 -44193130 - B1_Mur4 SINE Alu -8 142 1 1 1172 951 95 7 0 chr12 77064400 77064547 -44192983 + URR1B DNA MER1_type 78 225 0 1 1172 357 300 155 14 chr12 77065041 77065325 -44192205 - MLT1A0 LTR MaLR -4 361 38 1 1172 400 255 107 18 chr12 77065366 77065478 -44192052 + RSINE1 SINE B4 2 123 -42 1 1172 510 267 51 51 chr12 77065778 77065850 -44191680 + RSINE1 SINE B4 2 79 -86 1 1172 1933 186 31 8 chr12 77065850 77066235 -44191295 - ORR1B1 LTR MaLR 0 394 1 1 1172 510 267 51 51 chr12 77066235 77066300 -44191230 + RSINE1 SINE B4 80 139 -26 1 1172 384 247 0 12 chr12 77069164 77069246 -44188284 + ID4_ SINE ID 3 83 0 1 1172 593 250 14 14 chr12 77069369 77069507 -44188023 + MER58A DNA MER1_type 16 153 -71 1 1172 447 19 0 0 chr12 77069537 77069589 -44187941 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1173 252 202 76 48 chr12 77071090 77071190 -44186340 - L1M5 LINE L1 -479 5761 5659 1 1173 685 274 85 27 chr12 77071316 77071575 -44185955 + B4A SINE B4 3 276 -16 1 1173 441 213 0 60 chr12 77071743 77071843 -44185687 - B1F SINE Alu -40 109 16 1 1173 248 308 64 0 chr12 77071879 77071957 -44185573 - ID4_ SINE ID 0 83 1 1 1173 213 62 0 59 chr12 77072410 77072461 -44185069 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1173 260 288 0 0 chr12 77072461 77072534 -44184996 + C-rich Low_complexity Low_complexity 6 78 0 1 1173 186 43 0 0 chr12 77072534 77072557 -44184973 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1173 185 0 0 39 chr12 77072660 77072686 -44184844 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1173 22 0 0 0 chr12 77072717 77072739 -44184791 + AT_rich Low_complexity Low_complexity 1 22 0 1 1173 232 274 0 0 chr12 77073086 77073148 -44184382 + C-rich Low_complexity Low_complexity 1 62 0 1 1173 396 0 0 0 chr12 77073293 77073337 -44184193 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 1173 278 106 21 0 chr12 77073570 77073617 -44183913 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 1 1173 1340 105 21 0 chr12 77073617 77073807 -44183723 - B2_Mm2 SINE B2 -1 194 1 1 1173 293 0 27 0 chr12 77073823 77073860 -44183670 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1173 329 287 59 0 chr12 77073860 77073961 -44183569 - PB1D10 SINE Alu -10 107 1 1 1173 211 253 86 21 chr12 77074054 77074147 -44183383 + B4A SINE B4 71 169 -123 1 1173 347 214 57 28 chr12 77074077 77074183 -44183347 + PB1D9 SINE Alu 11 119 -1 1 1173 278 277 12 12 chr12 77074714 77074798 -44182732 - B4 SINE B4 -207 85 2 1 1173 180 288 68 0 chr12 77075523 77075582 -44181948 - MIRm SINE MIR -95 181 119 1 1173 714 226 128 26 chr12 77075919 77076114 -44181416 - ID_B1 SINE B4 -8 216 2 1 1173 354 297 23 15 chr12 77076587 77076717 -44180813 + RMER15 LTR ERVL 384 514 -61 1 1173 297 0 0 0 chr12 77077047 77077080 -44180450 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1173 1384 71 38 5 chr12 77077104 77077289 -44180241 - B2_Mm2 SINE B2 -3 192 2 1 1173 1106 215 118 22 chr12 77077404 77077718 -44179812 - MTE2b LTR MaLR -35 344 1 1 1173 536 232 219 56 chr12 77078002 77078308 -44179222 + MTC LTR MaLR 52 407 -14 1 1173 195 114 0 0 chr12 77078550 77078585 -44178945 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1173 3103 59 31 24 chr12 77079195 77079613 -44177917 - BGLII LTR ERVK 0 421 1 1 1173 438 20 0 0 chr12 77081541 77081592 -44175938 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1173 763 321 150 36 chr12 77081788 77082308 -44175222 - MER21B LTR ERV1 -107 756 178 1 1173 396 305 22 58 chr12 77082420 77082559 -44174971 + B1F1 SINE Alu 2 135 -14 1 1173 23 0 0 0 chr12 77083449 77083472 -44174058 + AT_rich Low_complexity Low_complexity 1 23 0 1 1173 410 243 89 61 chr12 77083472 77083487 -44174043 - B2_Mm2 SINE B2 -9 186 173 1 1173 999 212 14 28 chr12 77083487 77083705 -44173825 - B3 SINE B2 -1 215 1 1 1173 542 243 89 61 chr12 77083705 77083869 -44173661 - B3 SINE B2 -23 172 2 1 1173 191 36 0 35 chr12 77084049 77084078 -44173452 + (CACCC)n Simple_repeat Simple_repeat 3 30 0 1 1173 351 0 0 0 chr12 77085111 77085150 -44172380 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1173 25 0 0 0 chr12 77085394 77085419 -44172111 + AT_rich Low_complexity Low_complexity 1 25 0 1 1173 325 286 10 10 chr12 77086057 77086156 -44171374 + PB1D7 SINE Alu 2 100 -20 1 1173 465 19 0 0 chr12 77086337 77086391 -44171139 + (TTC)n Simple_repeat Simple_repeat 2 55 0 1 1173 955 234 9 5 chr12 77086797 77087012 -44170518 + B3 SINE B2 1 216 0 1 1173 649 240 91 5 chr12 77088236 77088433 -44169097 + ID_B1 SINE B4 1 214 -10 1 1173 186 171 0 0 chr12 77088435 77088476 -44169054 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 1 1173 456 35 0 0 chr12 77088481 77088539 -44168991 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1173 330 67 0 0 chr12 77088989 77089034 -44168496 + (TCTCC)n Simple_repeat Simple_repeat 1 45 0 1 1173 688 126 0 0 chr12 77089039 77089142 -44168388 - B1_Mus1 SINE Alu -7 141 39 1 1173 740 36 17 67 chr12 77089145 77089264 -44168266 - B1_Mm SINE Alu -34 113 1 1 1173 441 54 0 0 chr12 77089550 77089606 -44167924 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1173 327 304 69 69 chr12 77089634 77089779 -44167751 - PB1 SINE Alu -2 145 1 1 1173 3275 53 2 0 chr12 77090824 77091219 -44166311 - MTA_Mm LTR MaLR 0 396 1 1 1173 603 0 0 0 chr12 77091219 77091297 -44166233 - MTA_Mm-int LTR MaLR 0 1098 1021 1 1173 260 275 81 59 chr12 77092049 77092168 -44165362 + MLT1E1A LTR MaLR 289 403 -277 1 1173 573 304 20 0 chr12 77092239 77092440 -44165090 - ID_B1 SINE B4 -19 205 1 2 1173 264 241 8 134 chr12 77092456 77092590 -44164940 - Lx8 LINE L1 0 7473 7357 2 1173 233 203 13 80 chr12 77092625 77092700 -44164830 - Lx8 LINE L1 -201 7272 7203 2 1173 569 240 144 6 chr12 77093324 77093504 -44164026 - B3 SINE B2 -11 205 1 2 1173 588 246 100 25 chr12 77093539 77093739 -44163791 - ID_B1 SINE B4 -7 217 3 2 1173 192 179 0 0 chr12 77093797 77093836 -44163694 + T-rich Low_complexity Low_complexity 1 39 0 2 1173 533 239 96 7 chr12 77094062 77094197 -44163333 + RSINE1 SINE B4 3 149 -16 2 1173 479 255 28 9 chr12 77094322 77094429 -44163101 - PB1D10 SINE Alu 0 117 9 2 1173 225 315 112 0 chr12 77094467 77094556 -44162974 + PB1D10 SINE Alu 2 100 -17 2 1173 29 22 0 21 chr12 77095574 77095587 -44161943 + AT_rich Low_complexity Low_complexity 1 13 0 2 1173 999 161 0 7 chr12 77095587 77095737 -44161793 + B1_Mur4 SINE Alu 1 149 -1 2 1173 29 22 0 21 chr12 77095737 77095770 -44161760 + AT_rich Low_complexity Low_complexity 1 33 0 2 1173 219 146 0 0 chr12 77096236 77096277 -44161253 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1173 294 95 0 0 chr12 77096473 77096515 -44161015 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 2 1173 853 154 0 40 chr12 77096523 77096672 -44160858 - B1_Mur3 SINE Alu -6 143 1 2 1173 27 29 0 0 chr12 77097015 77097049 -44160481 + AT_rich Low_complexity Low_complexity 1 34 0 2 1173 561 68 0 0 chr12 77097143 77097217 -44160313 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1173 645 206 96 6 chr12 77097231 77097397 -44160133 - B3 SINE B2 -4 212 32 2 1173 251 323 93 25 chr12 77097700 77097862 -44159668 + MIRb SINE MIR 45 217 -51 2 1173 413 169 26 0 chr12 77098147 77098224 -44159306 + B3A SINE B2 2 80 -118 2 1173 216 67 0 0 chr12 77098311 77098341 -44159189 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2 1173 1086 215 177 7 chr12 77098674 77098973 -44158557 - MTD LTR MaLR -52 367 18 2 1173 391 247 0 43 chr12 77100764 77100857 -44156673 + RSINE1 SINE B4 4 92 -73 2 1173 1142 133 0 80 chr12 77101013 77101225 -44156305 + B2_Mm2 SINE B2 1 195 0 2 1173 628 218 8 8 chr12 77101429 77101554 -44155976 + RSINE1 SINE B4 2 126 -39 2 1173 24 32 0 0 chr12 77101597 77101628 -44155902 + AT_rich Low_complexity Low_complexity 1 31 0 2 1173 500 188 0 68 chr12 77102961 77103064 -44154466 - PB1D9 SINE Alu -13 107 12 2 1173 577 300 186 44 chr12 77103327 77103554 -44153976 - Charlie1a DNA MER1_type -894 561 293 2 1173 264 150 250 0 chr12 77103554 77103614 -44153916 - ID4_ SINE ID -6 77 3 2 1173 577 300 186 44 chr12 77103614 77103864 -44153666 - Charlie1a DNA MER1_type -1163 292 17 2 1173 461 312 73 84 chr12 77104239 77104463 -44153067 + B4 SINE B4 1 229 -63 2 1173 687 198 48 0 chr12 77104463 77104589 -44152941 + B1_Mur1 SINE Alu 2 133 -16 2 1173 461 312 73 84 chr12 77104589 77104651 -44152879 + B4 SINE B4 230 283 -9 2 1173 1255 41 0 0 chr12 77104704 77104851 -44152679 + B1_Mus2 SINE Alu 1 147 0 2 1173 200 240 40 13 chr12 77105337 77105413 -44152117 - MER5B DNA MER1_type -3 175 98 2 1173 28 0 0 0 chr12 77106455 77106483 -44151047 + AT_rich Low_complexity Low_complexity 1 28 0 2 1173 463 199 128 35 chr12 77106543 77106684 -44150846 - B3 SINE B2 -62 154 1 2 1173 396 0 0 0 chr12 77106957 77107001 -44150529 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1173 306 0 0 0 chr12 77107431 77107465 -44150065 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1173 1606 262 115 42 chr12 77107522 77107863 -44149667 - L1MA8 LINE L1 -97 6194 5811 2 1173 287 0 53 0 chr12 77107863 77107901 -44149629 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1173 1606 262 115 42 chr12 77107901 77107945 -44149585 - L1MA8 LINE L1 -481 5810 5781 2 1173 785 159 20 33 chr12 77107945 77108095 -44149435 - B1_Mur1 SINE Alu 0 149 2 2 1173 1606 262 115 42 chr12 77108095 77108405 -44149125 - L1MA8 LINE L1 -511 5780 5447 2 1173 215 284 0 69 chr12 77108446 77108518 -44149012 - ID4_ SINE ID -3 80 14 2 1173 1704 26 0 0 chr12 77108742 77108933 -44148597 + B2_Mm1t SINE B2 2 192 -1 2 1173 29 0 0 0 chr12 77110782 77110811 -44146719 + AT_rich Low_complexity Low_complexity 1 29 0 2 1173 913 197 24 24 chr12 77110838 77111046 -44146484 - B3 SINE B2 0 216 9 2 1173 372 406 14 7 chr12 77111094 77111238 -44146292 + RSINE1 SINE B4 3 147 -18 2 1173 321 26 0 0 chr12 77111244 77111282 -44146248 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1173 203 250 107 48 chr12 77111404 77111488 -44146042 - MIRb SINE MIR -11 257 169 2 1173 486 129 0 0 chr12 77111710 77111795 -44145735 + (TTGG)n Simple_repeat Simple_repeat 2 86 0 2 1173 307 304 26 18 chr12 77111801 77111915 -44145615 - PB1D10 SINE Alu 0 117 3 2 1173 379 248 25 69 chr12 77112321 77112481 -44145049 - L1_Rod LINE L1 -2858 2989 2837 2 1173 453 215 32 0 chr12 77112481 77112574 -44144956 - RCHARR1 DNA MER1_type -501 473 378 2 1173 746 182 54 7 chr12 77112555 77112704 -44144826 - RMER5 LTR ERV1 -139 395 240 2 1173 473 178 157 25 chr12 77112714 77112835 -44144695 - RMER5 LTR ERV1 -397 137 1 2 1173 1199 43 0 0 chr12 77112866 77113005 -44144525 - B1_Mus1 SINE Alu -8 140 2 2 1173 523 253 79 16 chr12 77113008 77113197 -44144333 - RCHARR1 DNA MER1_type -611 363 163 2 1173 563 230 14 41 chr12 77113424 77113569 -44143961 - B4A SINE B4 -151 141 1 2 1173 310 358 0 28 chr12 77113591 77113732 -44143798 - RCHARR1 DNA MER1_type -835 139 3 2 1173 1233 54 0 0 chr12 77114116 77114263 -44143267 - B1_Mus2 SINE Alu 0 147 1 2 1173 230 318 36 24 chr12 77115151 77115270 -44142260 - ID2 SINE ID -29 123 2 2 1173 200 229 21 0 chr12 77116304 77116352 -44141178 + CT-rich Low_complexity Low_complexity 2 50 0 2 1173 242 311 18 64 chr12 77117799 77117909 -44139621 - LTR55 LTR ERV -25 523 419 2 1173 821 203 83 31 chr12 77118386 77118579 -44138951 + ID_B1 SINE B4 22 224 0 2 1173 210 71 0 0 chr12 77118606 77118634 -44138896 + (TGG)n Simple_repeat Simple_repeat 1 28 0 2 1173 535 238 0 0 chr12 77118806 77118907 -44138623 - B1_Mur1 SINE Alu -17 132 32 2 1173 183 186 0 0 chr12 77118925 77118968 -44138562 + A-rich Low_complexity Low_complexity 1 43 0 2 1173 525 202 115 0 chr12 77119010 77119114 -44138416 + B1_Mur1 SINE Alu 13 128 -21 2 1173 387 0 0 0 chr12 77119116 77119159 -44138371 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1173 1190 182 9 23 chr12 77119197 77119416 -44138114 + B3 SINE B2 1 216 0 2 1173 257 331 157 14 chr12 77120235 77120416 -44137114 - MIR SINE MIR -40 228 15 2 1173 2474 155 2 15 chr12 77120420 77120832 -44136698 - MTB_Mm LTR MaLR 0 407 1 2 1173 1249 34 7 0 chr12 77120940 77121087 -44136443 - B1_Mus1 SINE Alu 0 148 1 2 1173 241 265 73 0 chr12 77121210 77121278 -44136252 + tRNA-Ala-GCY_ tRNA tRNA 2 74 -1 2 1173 525 258 54 8 chr12 77121791 77121920 -44135610 + RSINE1 SINE B4 2 136 -29 2 1173 243 0 0 0 chr12 77121920 77121947 -44135583 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1173 25 0 0 0 chr12 77121952 77121977 -44135553 + AT_rich Low_complexity Low_complexity 1 25 0 2 1173 470 250 216 27 chr12 77122121 77122269 -44135261 + ID_B1 SINE B4 2 177 -47 2 1173 365 218 69 0 chr12 77122197 77122284 -44135246 + PB1D10 SINE Alu 25 117 0 2 1173 709 185 53 15 chr12 77122305 77122437 -44135093 + B1_Mur1 SINE Alu 13 149 0 2 1173 390 144 0 58 chr12 77122602 77122705 -44134825 + L1Md_F3 LINE L1 6470 6566 -18 2 1173 459 252 38 120 chr12 77122906 77122926 -44134604 + B4 SINE B4 77 220 -71 2 1173 878 175 0 0 chr12 77122926 77123063 -44134467 + B1_Mus2 SINE Alu 5 141 -6 2 1173 189 0 0 0 chr12 77123068 77123089 -44134441 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1173 295 226 82 45 chr12 77123715 77123844 -44133686 - ID4 SINE ID -25 127 4 2 1173 1154 179 15 0 chr12 77124159 77124360 -44133170 - B3 SINE B2 -10 206 3 2 1173 524 238 151 58 chr12 77124432 77124637 -44132893 - ID_B1 SINE B4 0 224 1 2 1173 944 215 74 10 chr12 77124653 77124855 -44132675 - B3 SINE B2 0 216 2 2 1173 434 347 68 52 chr12 77125376 77125628 -44131902 - ORR1E LTR MaLR -49 310 55 2 1173 313 304 0 0 chr12 77126853 77126932 -44130598 - ID4 SINE ID -3 80 2 2 1173 248 304 8 152 chr12 77126934 77127066 -44130464 + MER117 DNA MER1_type 30 142 -55 2 1173 294 206 164 0 chr12 77127577 77127650 -44129880 + B1F SINE Alu 4 88 -61 2 1173 241 267 128 0 chr12 77127650 77127663 -44129867 + ID_B1 SINE B4 85 181 -43 2 1173 1800 239 22 17 chr12 77128008 77128412 -44129118 + Lx6 LINE L1 6999 7404 -56 2 1173 290 328 8 92 chr12 77128420 77128551 -44128979 + B3A SINE B2 61 180 -18 2 1173 1468 64 32 0 chr12 77129484 77129672 -44127858 + B2_Mm2 SINE B2 2 195 0 2 1173 816 249 75 39 chr12 77129751 77130031 -44127499 + B4A SINE B4 1 290 -2 2 1173 319 155 0 23 chr12 77130032 77130118 -44127412 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1173 272 286 106 53 chr12 77130122 77130310 -44127220 - RMER17A LTR ERVK -192 559 362 2 1173 258 210 0 31 chr12 77130516 77130580 -44126950 + L1MC5 LINE L1 7744 7805 -156 2 1173 831 250 46 0 chr12 77131303 77131499 -44126031 + ID_B1 SINE B4 1 205 -19 2 1173 271 273 65 0 chr12 77131683 77131760 -44125770 + ID SINE ID 2 83 -141 2 1173 240 163 0 0 chr12 77131894 77131937 -44125593 + (TTG)n Simple_repeat Simple_repeat 2 44 0 2 1173 222 133 0 0 chr12 77131964 77131994 -44125536 - PB1D9 SINE Alu -87 33 4 2 1173 638 248 35 0 chr12 77133023 77133164 -44124366 + B1_Mur1 SINE Alu 1 146 -3 2 1173 204 219 0 0 chr12 77133165 77133206 -44124324 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1173 405 247 253 0 chr12 77133295 77133449 -44124081 + RMER30 DNA MER1_type 7 199 -3 3 1173 1176 68 0 0 chr12 77133884 77134031 -44123499 + B1_Mus2 SINE Alu 1 147 0 3 1173 235 230 11 33 chr12 77134165 77134255 -44123275 + L1MC4 LINE L1 6648 6735 -1307 3 1173 313 316 8 26 chr12 77134265 77134382 -44123148 + PB1D10 SINE Alu 1 115 -2 3 1173 2436 75 19 6 chr12 77135249 77135571 -44121959 - ORR1A3 LTR MaLR 0 326 1 3 1173 405 0 0 0 chr12 77135843 77135888 -44121642 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1173 247 304 25 25 chr12 77136179 77136260 -44121270 + ID4 SINE ID 3 83 0 3 1173 180 0 0 0 chr12 77136306 77136326 -44121204 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1173 281 214 0 18 chr12 77136858 77136915 -44120615 + B4A SINE B4 102 157 -135 3 1173 444 255 0 58 chr12 77136864 77136968 -44120562 + PB1D7 SINE Alu 23 120 0 3 1173 324 0 0 0 chr12 77137084 77137120 -44120410 + (CATA)n Simple_repeat Simple_repeat 4 39 0 3 1173 691 229 15 8 chr12 77137181 77137313 -44120217 - B1_Mur1 SINE Alu -5 144 12 3 1173 856 222 93 21 chr12 77137316 77137509 -44120021 + B3 SINE B2 2 208 -8 3 1173 839 179 26 26 chr12 77137658 77137854 -44119676 - B3 SINE B2 -2 193 1 3 1173 281 274 32 0 chr12 77137856 77137918 -44119612 - B4A SINE B4 -195 97 34 3 1173 592 242 24 65 chr12 77138305 77138394 -44119136 + ID SINE ID 1 82 -142 3 1173 388 310 50 0 chr12 77138394 77138494 -44119036 + PB1D10 SINE Alu 1 105 -12 3 1173 289 275 0 142 chr12 77139210 77139316 -44118214 - MER102b DNA MER1_type -148 193 103 3 1173 1192 151 52 0 chr12 77139330 77139522 -44118008 + B3 SINE B2 3 204 -12 3 1173 212 59 29 0 chr12 77139524 77139558 -44117972 + (TTA)n Simple_repeat Simple_repeat 3 37 0 3 1173 247 272 74 0 chr12 77139619 77139700 -44117830 + PB1 SINE Alu 6 92 -35 3 1173 443 246 121 17 chr12 77139695 77139811 -44117719 + B1F SINE Alu 21 148 -1 3 1173 647 144 108 0 chr12 77140352 77140463 -44117067 + B1_Mus1 SINE Alu 2 124 -24 3 1173 227 143 0 0 chr12 77142069 77142104 -44115426 - B3A SINE B2 -162 36 2 3 1173 414 0 0 0 chr12 77142629 77142675 -44114855 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1173 725 208 27 20 chr12 77143866 77144013 -44113517 - B1_Mur2 SINE Alu 0 149 2 3 1173 256 188 6 73 chr12 77144914 77145092 -44112438 + (CATG)n Simple_repeat Simple_repeat 1 166 0 3 1173 366 131 71 0 chr12 77145151 77145235 -44112295 - Lx LINE L1 -3 6651 6562 3 1173 472 99 305 59 chr12 77145981 77146099 -44111431 - B2_Mm2 SINE B2 -2 193 47 3 1173 1209 121 6 6 chr12 77146130 77146305 -44111225 - B2_Mm1t SINE B2 -14 179 5 3 1173 947 110 156 18 chr12 77146388 77146555 -44110975 - B2_Mm2 SINE B2 -5 190 1 3 1173 1559 211 88 9 chr12 77146648 77146978 -44110552 - ORR1D2 LTR MaLR 0 370 15 3 1173 590 224 19 99 chr12 77148538 77148751 -44108779 - B3A SINE B2 0 198 3 3 1173 216 0 0 0 chr12 77149101 77149125 -44108405 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1173 189 298 96 0 chr12 77150438 77150532 -44106998 - L2c LINE L2 -85 3302 3200 3 1173 323 311 115 55 chr12 77150585 77150969 -44106561 + L1MB8 LINE L1 4817 5223 -923 3 1173 478 274 274 17 chr12 77151124 77151718 -44105812 + L1MB8 LINE L1 5320 6063 -115 3 1173 415 266 78 26 chr12 77151805 77151921 -44105609 + B4 SINE B4 3 124 -168 3 1173 181 270 103 51 chr12 77151966 77152044 -44105486 + MIRc SINE MIR 98 179 -89 3 1173 287 284 105 44 chr12 77152192 77152306 -44105224 + ID_B1 SINE B4 80 200 -24 3 1173 313 239 42 74 chr12 77152359 77152454 -44105076 - PB1 SINE Alu -35 92 1 3 1173 276 252 109 86 chr12 77152607 77152676 -44104854 - MIR SINE MIR -37 225 164 3 1173 246 62 0 0 chr12 77152676 77152708 -44104822 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1173 276 252 109 86 chr12 77152708 77152812 -44104718 - MIR SINE MIR -99 163 48 3 1173 292 210 67 0 chr12 77154438 77154530 -44103000 - ID4 SINE ID -48 104 1 3 1173 530 186 5 50 chr12 77154590 77155028 -44102502 + CT-rich Low_complexity Low_complexity 1 417 0 3 1173 391 318 29 29 chr12 77155028 77155164 -44102366 - B1F SINE Alu -13 136 1 3 1173 198 0 0 0 chr12 77155173 77155195 -44102335 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 3 1173 1170 56 0 0 chr12 77155195 77155329 -44102201 - B1_Mus2 SINE Alu -12 135 2 3 1173 30 83 0 0 chr12 77155385 77155457 -44102073 + AT_rich Low_complexity Low_complexity 1 72 0 3 1173 898 163 0 20 chr12 77155507 77155657 -44101873 + B1_Mur2 SINE Alu 1 147 -2 3 1173 296 152 0 0 chr12 77156205 77156251 -44101279 + MTD LTR MaLR 374 419 0 3 1173 438 228 32 21 chr12 77156259 77156353 -44101177 - B3A SINE B2 -16 182 88 3 1173 307 245 31 41 chr12 77156387 77156485 -44101045 + B2_Mm2 SINE B2 1 97 -98 3 1173 1056 225 159 17 chr12 77156470 77156759 -44100771 - MTD LTR MaLR -89 330 1 3 1173 389 158 12 0 chr12 77156789 77156871 -44100659 + (ATGGTG)n Simple_repeat Simple_repeat 4 86 0 3 1173 868 211 102 5 chr12 77156871 77157076 -44100454 + B4A SINE B4 1 225 -67 3 1173 329 185 0 0 chr12 77159689 77159743 -44097787 - MTEa LTR MaLR -8 371 318 3 1173 254 259 126 69 chr12 77159770 77159857 -44097673 + RSINE1 SINE B4 68 159 -6 3 1173 1071 217 72 131 chr12 77159852 77160212 -44097318 - MTEa LTR MaLR -28 351 13 3 1173 382 289 19 19 chr12 77160265 77160371 -44097159 + MIR SINE MIR 44 149 -59 3 1173 736 215 61 56 chr12 77162896 77163093 -44094437 - B3A SINE B2 0 198 1 3 1173 817 228 0 13 chr12 77163426 77163577 -44093953 + RSINE1 SINE B4 2 150 -15 3 1173 183 287 99 63 chr12 77163936 77164072 -44093458 - L2b LINE L2 -195 3192 3054 3 1173 195 139 0 0 chr12 77164385 77164421 -44093109 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1173 228 234 13 25 chr12 77164547 77164626 -44092904 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 1173 744 241 67 16 chr12 77164626 77164820 -44092710 - B3 SINE B2 -12 204 1 3 1173 780 154 8 0 chr12 77165495 77165612 -44091918 + RSINE1 SINE B4 3 120 -45 3 1173 317 296 82 47 chr12 77165612 77165665 -44091865 + B2_Mm2 SINE B2 2 177 -18 3 1173 1322 104 0 10 chr12 77166001 77166196 -44091334 - B2_Mm2 SINE B2 0 195 3 3 1173 853 264 101 64 chr12 77166411 77166819 -44090711 + RMER13A LTR ERVK 1 423 -437 3 1173 459 0 0 0 chr12 77167929 77167980 -44089550 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1173 476 275 63 112 chr12 77167980 77168185 -44089345 - B4A SINE B4 -13 279 85 3 1173 1064 69 170 0 chr12 77168464 77168623 -44088907 - B2_Mm2 SINE B2 -8 187 2 3 1173 349 225 24 36 chr12 77168787 77168870 -44088660 - PB1D10 SINE Alu -9 108 27 3 1173 999 78 16 0 chr12 77168951 77169080 -44088450 + B1_Mus1 SINE Alu 5 135 -13 3 1173 1136 68 7 13 chr12 77169349 77169498 -44088032 + B1_Mus1 SINE Alu 1 148 0 3 1173 354 107 0 0 chr12 77169498 77169554 -44087976 + (A)n Simple_repeat Simple_repeat 1 56 0 3 1173 216 279 61 37 chr12 77169609 77169621 -44087909 + B1F2 SINE Alu 38 121 -28 3 1173 290 257 29 0 chr12 77169621 77169691 -44087839 + ID_B1 SINE B4 128 199 -25 3 1173 241 181 53 0 chr12 77170123 77170217 -44087313 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1173 1416 134 9 9 chr12 77170399 77170624 -44086906 + URR1B DNA MER1_type 1 225 0 3 1173 1258 215 33 8 chr12 77170941 77171185 -44086345 - B4A SINE B4 -8 284 35 3 1173 214 242 13 132 chr12 77171502 77171578 -44085952 - ID4 SINE ID -16 67 1 3 1173 447 269 67 8 chr12 77171708 77171828 -44085702 + B1F1 SINE Alu 1 127 -22 3 1173 283 288 55 0 chr12 77171813 77171886 -44085644 + ID SINE ID 13 89 -135 3 1173 354 158 0 0 chr12 77172013 77172070 -44085460 - MTD LTR MaLR -21 398 342 3 1173 1285 34 0 0 chr12 77172664 77172812 -44084718 + B1_Mus1 SINE Alu 1 148 0 3 1173 201 74 0 0 chr12 77174879 77174906 -44082624 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1173 481 209 26 151 chr12 77176041 77176193 -44081337 + ID_B1 SINE B4 1 133 -91 3 1173 719 244 35 11 chr12 77176324 77176498 -44081032 + B3 SINE B2 2 179 -37 3 1173 261 282 172 75 chr12 77176494 77176628 -44080902 + B4 SINE B4 77 223 -69 3 1173 430 295 9 0 chr12 77176518 77176630 -44080900 + PB1D7 SINE Alu 8 120 0 3 1173 561 160 0 0 chr12 77177068 77177174 -44080356 + (TG)n Simple_repeat Simple_repeat 1 106 0 3 1173 303 261 62 0 chr12 77177174 77177239 -44080291 - ID4_ SINE ID -1 82 14 3 1173 400 216 134 0 chr12 77177283 77177380 -44080150 - PB1 SINE Alu -17 110 1 3 1173 700 237 52 0 chr12 77178577 77178712 -44078818 - RSINE1 SINE B4 -21 144 3 3 1173 329 279 70 49 chr12 77178719 77178862 -44078668 - MIRb SINE MIR -75 193 48 3 1173 1087 45 258 0 chr12 77179105 77179260 -44078270 - B2_Mm2 SINE B2 0 195 1 3 1173 237 33 0 0 chr12 77179269 77179299 -44078231 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3 1173 458 125 9 103 chr12 77179299 77179406 -44078124 - Lx LINE L1 -2 6652 6556 3 1173 204 354 59 17 chr12 77179491 77179609 -44077921 - MIRb SINE MIR -31 237 115 3 1173 267 31 0 0 chr12 77180521 77180553 -44076977 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1173 900 281 14 76 chr12 77180847 77181124 -44076406 - B4A SINE B4 -31 261 2 4 1173 213 39 0 0 chr12 77182427 77182453 -44075077 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 4 1173 225 94 0 0 chr12 77184424 77184456 -44073074 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 4 1173 353 259 77 8 chr12 77184995 77185112 -44072418 + MIR SINE MIR 35 159 -103 4 1173 1568 53 0 5 chr12 77185303 77185492 -44072038 - B2_Mm2 SINE B2 -7 188 1 4 1173 465 330 14 9 chr12 77187040 77187260 -44070270 + ID_B1 SINE B4 1 221 -3 4 1173 506 205 17 25 chr12 77187942 77188062 -44069468 + PB1D7 SINE Alu 1 119 -1 4 1173 666 202 0 30 chr12 77189483 77189616 -44067914 - ID_B1 SINE B4 -9 215 87 4 1173 917 129 36 0 chr12 77189701 77189841 -44067689 - B1_Mur4 SINE Alu 0 150 6 4 1173 553 286 29 0 chr12 77190039 77190179 -44067351 - B1_Mur1 SINE Alu -5 144 1 4 1173 257 304 36 114 chr12 77190179 77190239 -44067291 - MT2B LTR ERVL -427 157 112 4 1173 1295 182 0 39 chr12 77190215 77190444 -44067086 + URR1A DNA MER1_type 6 225 -1 4 1173 329 273 117 9 chr12 77191003 77191114 -44066416 - MLT1E2 LTR MaLR 0 627 505 4 1173 995 132 196 0 chr12 77191126 77191315 -44066215 - URR1A DNA MER1_type 0 226 1 4 1173 457 133 333 0 chr12 77191323 77191428 -44066102 - URR1A DNA MER1_type -86 140 1 4 1173 316 272 56 147 chr12 77191477 77191590 -44065940 - MLT1E2 LTR MaLR -447 180 74 4 1173 1649 131 220 6 chr12 77191590 77191760 -44065770 - ORR1C2 LTR MaLR -3 381 200 4 1173 384 22 0 0 chr12 77191760 77191805 -44065725 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1173 1649 131 220 6 chr12 77191805 77191948 -44065582 - ORR1C2 LTR MaLR -185 199 1 4 1173 316 272 56 147 chr12 77191948 77192032 -44065498 - MLT1E2 LTR MaLR -554 73 1 4 1173 1168 112 143 30 chr12 77192350 77192553 -44064977 + URR1A DNA MER1_type 1 226 0 4 1173 182 150 25 0 chr12 77192681 77192721 -44064809 + (ATG)n Simple_repeat Simple_repeat 1 41 0 4 1173 746 196 106 21 chr12 77193025 77193213 -44064317 + B3 SINE B2 1 204 -12 4 1173 363 23 0 0 chr12 77193267 77193311 -44064219 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 1173 962 25 0 17 chr12 77193311 77193431 -44064099 - B1_Mm SINE Alu -13 134 17 4 1173 261 0 0 0 chr12 77194284 77194313 -44063217 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 1173 229 233 0 0 chr12 77194410 77194453 -44063077 - MurSatRep1 Unknown Unknown -1852 285 243 4 1173 237 182 0 64 chr12 77194477 77194524 -44063006 + ID_B1 SINE B4 129 172 -52 4 1173 264 30 0 0 chr12 77194592 77194625 -44062905 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 1173 276 281 0 15 chr12 77195550 77195615 -44061915 + ID4_ SINE ID 10 73 -10 4 1173 383 272 39 34 chr12 77195621 77195739 -44061791 + PB1D10 SINE Alu 22 132 -17 4 1173 189 323 0 133 chr12 77197140 77197215 -44060315 - L3b LINE CR1 -78 404 340 4 1173 491 221 32 0 chr12 77197355 77197450 -44060080 - B1F1 SINE Alu -47 102 5 4 1173 2597 125 56 69 chr12 77199419 77199882 -44057648 - RMER15 LTR ERVL -5 570 114 4 1173 258 303 67 73 chr12 77199932 77200096 -44057434 - B4 SINE B4 -124 168 6 4 1173 282 56 0 0 chr12 77201284 77201320 -44056210 + (CCCA)n Simple_repeat Simple_repeat 2 37 0 4 1174 322 148 148 0 chr12 77202229 77202290 -44055240 + ID4_ SINE ID 7 76 -7 4 1174 294 178 133 27 chr12 77202290 77202304 -44055226 + ID SINE ID 7 89 -135 4 1174 834 77 25 8 chr12 77202370 77202488 -44055042 + PB1D9 SINE Alu 1 120 0 4 1174 245 98 24 0 chr12 77202530 77202571 -44054959 + (GAAAA)n Simple_repeat Simple_repeat 5 46 0 4 1174 181 284 58 87 chr12 77205129 77205233 -44052297 - L2 LINE L2 -1025 2394 2294 4 1174 225 0 0 0 chr12 77206897 77206922 -44050608 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1174 729 295 85 53 chr12 77207428 77207675 -44049855 - MER2 DNA MER2_type -90 255 1 4 1174 417 284 141 7 chr12 77209372 77209514 -44048016 - RSINE1 SINE B4 -2 163 3 4 1174 22 56 0 0 chr12 77209514 77209550 -44047980 + AT_rich Low_complexity Low_complexity 1 36 0 4 1174 183 80 0 0 chr12 77209861 77209886 -44047644 + (GGA)n Simple_repeat Simple_repeat 1 25 0 4 1174 1039 213 55 38 chr12 77209979 77210286 -44047244 - MTE2b LTR MaLR 0 379 77 4 1174 2045 79 75 7 chr12 77210286 77210579 -44046951 - L1_Mus4 LINE L1 -81 6555 6243 4 1174 371 271 21 0 chr12 77210583 77210679 -44046851 - MTE2b LTR MaLR -280 99 2 4 1174 198 150 0 0 chr12 77210880 77210920 -44046610 + (CTG)n Simple_repeat Simple_repeat 1 40 0 4 1174 22 0 0 0 chr12 77211753 77211775 -44045755 + AT_rich Low_complexity Low_complexity 1 22 0 4 1174 234 0 0 0 chr12 77211887 77211913 -44045617 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1174 926 181 21 21 chr12 77212588 77212774 -44044756 + B2_Mm2 SINE B2 5 190 -5 4 1174 449 306 143 39 chr12 77212935 77213507 -44044023 + L1_Rod LINE L1 1267 1898 -3949 4 1174 368 232 24 0 chr12 77213532 77213614 -44043916 + PB1D9 SINE Alu 37 120 0 4 1174 1949 284 121 55 chr12 77213627 77213838 -44043692 + Lx8 LINE L1 6332 6522 -951 4 1174 244 48 23 23 chr12 77213838 77213881 -44043649 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1174 681 174 59 22 chr12 77213884 77214019 -44043511 - B1_Mur1 SINE Alu -6 143 4 4 1174 1949 284 121 55 chr12 77214019 77214661 -44042869 + Lx8 LINE L1 6523 7246 -227 4 1174 279 71 0 0 chr12 77214686 77214728 -44042802 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1174 853 58 215 0 chr12 77214728 77214849 -44042681 - B1_Mm SINE Alu 0 147 1 4 1174 234 0 0 0 chr12 77214856 77214882 -44042648 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1174 872 216 30 25 chr12 77214974 77215178 -44042352 - B3A SINE B2 -3 213 15 4 1174 319 298 70 0 chr12 77215335 77215449 -44042081 - MTEa LTR MaLR -155 224 103 4 1174 706 229 7 20 chr12 77215951 77216098 -44041432 + B1_Mur3 SINE Alu 1 145 -4 4 1174 312 27 0 0 chr12 77216729 77216766 -44040764 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1174 24 32 0 0 chr12 77217084 77217115 -44040415 + AT_rich Low_complexity Low_complexity 1 31 0 4 1174 352 270 126 29 chr12 77217544 77217647 -44039883 - PB1D7 SINE Alu -7 113 1 4 1174 872 70 0 9 chr12 77218430 77218545 -44038985 - B1_Mus1 SINE Alu -32 116 3 4 1174 258 244 16 32 chr12 77218439 77218562 -44038968 - ORR1B1-int LTR MaLR -755 754 634 4 1174 230 215 36 48 chr12 77218762 77218845 -44038685 - ID4 SINE ID -1 82 1 4 1174 242 252 157 50 chr12 77218864 77218985 -44038545 + MIRb SINE MIR 67 200 -68 4 1174 1114 37 8 0 chr12 77219429 77219563 -44037967 - B1_Mus1 SINE Alu -12 136 2 4 1174 287 246 116 0 chr12 77220461 77220530 -44037000 + PB1D10 SINE Alu 2 78 -39 4 1174 1803 144 41 50 chr12 77221446 77221749 -44035781 + ORR1B1 LTR MaLR 41 351 -43 4 1174 1290 97 38 0 chr12 77221749 77221935 -44035595 + B2_Mm2 SINE B2 1 193 -2 4 1174 1803 144 41 50 chr12 77221935 77221974 -44035556 + ORR1B1 LTR MaLR 352 380 -14 4 1174 410 326 119 25 chr12 77223146 77223382 -44034148 + MER82 DNA MER2_type 367 624 -29 4 1174 1261 261 75 43 chr12 77225488 77225981 -44031549 + RMER5 LTR ERV1 15 523 -11 4 1174 906 141 0 27 chr12 77226017 77226163 -44031367 + B1_Mus1 SINE Alu 1 142 -6 4 1174 1512 167 162 9 chr12 77226220 77226559 -44030971 - MTD LTR MaLR -11 408 18 4 1174 322 246 0 0 chr12 77226574 77226643 -44030887 + PB1D9 SINE Alu 36 104 -16 4 1174 214 308 0 49 chr12 77226640 77226722 -44030808 + ID4 SINE ID 5 82 -1 4 1174 446 303 52 22 chr12 77226981 77227116 -44030414 - RSINE1 SINE B4 -25 140 2 4 1174 487 250 39 0 chr12 77227179 77227307 -44030223 - ID_B1 SINE B4 -91 133 1 4 1174 393 220 171 18 chr12 77227822 77227933 -44029597 + B1_Mur3 SINE Alu 1 128 -21 4 1174 227 150 25 0 chr12 77227934 77227974 -44029556 + L1MB5 LINE L1 5864 5904 -274 4 1174 427 254 83 25 chr12 77227975 77228096 -44029434 - ID_B1 SINE B4 -6 218 91 4 1174 246 219 78 0 chr12 77228155 77228219 -44029311 + L1MB5 LINE L1 5933 6001 -173 4 1174 277 254 122 65 chr12 77228225 77228364 -44029166 + MTEa LTR MaLR 6 152 -227 4 1174 272 246 45 113 chr12 77228537 77228670 -44028860 + L1MB8 LINE L1 5998 6121 -57 4 1174 418 260 161 8 chr12 77228670 77228794 -44028736 - B1F SINE Alu 0 149 7 4 1174 198 0 0 0 chr12 77229346 77229368 -44028162 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1174 279 300 9 35 chr12 77229907 77230021 -44027509 - ID_B1 SINE B4 -2 222 112 4 1174 732 133 76 23 chr12 77230231 77230362 -44027168 - B1_Mus2 SINE Alu -1 146 9 4 1174 1473 68 26 0 chr12 77230410 77230600 -44026930 - B2_Mm2 SINE B2 0 195 1 4 1174 227 286 0 0 chr12 77230694 77230750 -44026780 + PB1D10 SINE Alu 40 95 -22 4 1174 403 259 36 24 chr12 77230769 77230935 -44026595 - L1MEc LINE L1 -4939 1461 1294 4 1174 229 341 85 23 chr12 77231276 77231453 -44026077 - L1MEc LINE L1 -5705 695 508 4 1174 256 306 0 0 chr12 77232031 77232116 -44025414 - L1MEc LINE L1 -5748 652 568 4 1174 685 126 0 139 chr12 77232342 77232508 -44025022 + B1_Mur3 SINE Alu 7 149 0 4 1174 292 268 37 0 chr12 77233102 77233184 -44024346 + MER2 DNA MER2_type 122 206 -139 4 1174 1127 71 0 0 chr12 77233194 77233334 -44024196 + B1_Mus2 SINE Alu 2 141 -6 4 1174 180 0 0 0 chr12 77233337 77233357 -44024173 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1174 266 287 21 31 chr12 77233366 77233463 -44024067 + MER2 DNA MER2_type 201 296 -49 4 1174 206 200 0 43 chr12 77233488 77233535 -44023995 + GA-rich Low_complexity Low_complexity 1 45 0 4 1174 1395 54 43 21 chr12 77234201 77234389 -44023141 + B2_Mm1a SINE B2 2 193 0 4 1174 646 161 24 8 chr12 77234491 77234616 -44022914 - B1_Mur4 SINE Alu -21 129 3 4 1174 280 183 66 16 chr12 77235093 77235154 -44022376 + tRNA-Ala-GCY_ tRNA tRNA 4 67 -8 4 1174 317 161 71 0 chr12 77235100 77235156 -44022374 + ID4 SINE ID 16 75 -8 4 1174 546 270 0 0 chr12 77235652 77235767 -44021763 - PB1D10 SINE Alu -1 116 2 5 1174 206 30 0 83 chr12 77235783 77235819 -44021711 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1174 279 0 0 0 chr12 77236353 77236384 -44021146 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1174 240 280 151 0 chr12 77236867 77236960 -44020570 - PB1D10 SINE Alu -6 111 5 5 1174 324 0 0 0 chr12 77237041 77237077 -44020453 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1174 560 236 95 0 chr12 77238175 77238323 -44019207 - RSINE1 SINE B4 0 165 4 5 1174 290 0 80 0 chr12 77238403 77238453 -44019077 + (CAA)n Simple_repeat Simple_repeat 2 55 0 5 1174 261 0 0 0 chr12 77238515 77238544 -44018986 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1174 325 136 0 29 chr12 77238888 77238956 -44018574 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 1174 398 278 71 0 chr12 77238956 77239082 -44018448 - ID_B1 SINE B4 -9 215 81 5 1174 371 268 0 12 chr12 77239190 77239273 -44018257 - ID4_ SINE ID 0 83 2 5 1174 1229 61 0 0 chr12 77239330 77239477 -44018053 + B1_Mus2 SINE Alu 1 147 0 5 1174 242 138 37 24 chr12 77239479 77239561 -44017969 + A-rich Low_complexity Low_complexity 2 84 0 5 1174 921 194 12 0 chr12 77239567 77239732 -44017798 + B3 SINE B2 41 207 -9 5 1174 195 42 0 0 chr12 77239736 77239760 -44017770 + (TAA)n Simple_repeat Simple_repeat 2 25 0 5 1174 281 297 45 57 chr12 77239790 77239947 -44017583 + RSINE1 SINE B4 5 159 -6 5 1174 37 0 0 0 chr12 77239951 77239988 -44017542 + AT_rich Low_complexity Low_complexity 1 37 0 5 1174 301 349 28 0 chr12 77240142 77240251 -44017279 - PB1D10 SINE Alu -5 112 1 5 1174 419 0 20 0 chr12 77240517 77240568 -44016962 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1174 287 341 64 28 chr12 77240784 77240969 -44016561 + MIRb SINE MIR 61 259 -3 5 1174 248 40 80 0 chr12 77241609 77241659 -44015871 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1174 432 0 0 0 chr12 77241786 77241834 -44015696 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 1174 1088 66 0 0 chr12 77241834 77241970 -44015560 - B1_Mus1 SINE Alu -12 136 1 5 1174 333 189 13 13 chr12 77243297 77243372 -44014158 - HAL1-3A_ME LINE L1 -809 2049 1975 5 1174 276 303 15 0 chr12 77243396 77243462 -44014068 - ID4 SINE ID -11 72 6 5 1174 960 235 84 38 chr12 77243707 77243963 -44013567 + B4A SINE B4 4 272 -20 5 1174 384 103 0 0 chr12 77243963 77244021 -44013509 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1174 494 239 42 35 chr12 77244571 77244714 -44012816 + RSINE1 SINE B4 3 146 -19 5 1174 624 242 225 4 chr12 77244809 77245045 -44012485 - MER47A DNA MER2_type -72 294 7 5 1174 268 398 105 8 chr12 77245328 77245452 -44012078 + MER115 DNA Tip100 123 258 -435 5 1174 280 209 81 0 chr12 77245614 77245700 -44011830 + MER115 DNA Tip100 484 576 -117 5 1174 540 253 42 131 chr12 77245724 77245915 -44011615 + B3A SINE B2 16 189 -9 5 1174 1164 62 21 0 chr12 77245950 77246095 -44011435 + B1_Mus1 SINE Alu 1 148 0 5 1174 302 219 13 27 chr12 77246607 77246682 -44010848 + ID4_ SINE ID 1 74 -9 5 1174 250 276 0 33 chr12 77247214 77247304 -44010226 + B4 SINE B4 3 89 -203 5 1174 943 158 0 0 chr12 77247310 77247456 -44010074 + B1_Mur2 SINE Alu 2 147 -2 5 1174 375 141 0 0 chr12 77247456 77247520 -44010010 + (GGA)n Simple_repeat Simple_repeat 1 64 0 5 1174 219 352 42 0 chr12 77247709 77247780 -44009750 + RSINE1 SINE B4 75 148 -17 5 1174 471 78 0 0 chr12 77247785 77247849 -44009681 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1174 409 214 16 64 chr12 77247914 77248039 -44009491 + B1F SINE Alu 31 149 0 5 1174 955 151 202 22 chr12 77248275 77248458 -44009072 + B3 SINE B2 1 216 0 5 1174 24 0 0 0 chr12 77248462 77248486 -44009044 + AT_rich Low_complexity Low_complexity 1 24 0 5 1174 2934 62 0 18 chr12 77248531 77248926 -44008604 - L1Md_F2 LINE L1 -1 6581 6194 5 1174 670 183 161 32 chr12 77249431 77249617 -44007913 + B3 SINE B2 1 210 -6 5 1174 315 213 0 0 chr12 77249787 77249848 -44007682 + ID4_ SINE ID 12 72 -11 5 1174 287 49 24 0 chr12 77249856 77249897 -44007633 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1174 207 0 0 0 chr12 77249917 77249940 -44007590 + (CAT)n Simple_repeat Simple_repeat 1 23 0 5 1174 31 58 0 0 chr12 77250300 77250352 -44007178 + AT_rich Low_complexity Low_complexity 1 52 0 5 1174 497 115 11 0 chr12 77250353 77250440 -44007090 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1174 770 242 0 0 chr12 77250442 77250591 -44006939 - RSINE1 SINE B4 -14 151 3 5 1174 1373 90 27 0 chr12 77250694 77250882 -44006648 + B2_Mm2 SINE B2 1 193 -2 5 1174 1041 71 49 14 chr12 77250944 77251087 -44006443 + B1_Mus1 SINE Alu 1 148 0 5 1174 186 103 0 0 chr12 77251097 77251126 -44006404 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1174 617 284 7 21 chr12 77251135 77251279 -44006251 + ID_B1 SINE B4 2 143 -81 5 1174 684 37 0 0 chr12 77251408 77251489 -44006041 + L1Md_F2 LINE L1 6202 6282 -300 5 1174 311 340 30 20 chr12 77251489 77251588 -44005942 + ID_B1 SINE B4 114 213 -11 5 1174 495 0 0 0 chr12 77251595 77251650 -44005880 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 1174 460 243 238 65 chr12 77251663 77251905 -44005625 + B4A SINE B4 9 292 0 5 1174 380 269 0 65 chr12 77252402 77252525 -44005005 + Lx9 LINE L1 6835 6949 -695 5 1174 1915 226 56 26 chr12 77253759 77254262 -44003268 + Lx9 LINE L1 6937 7454 -190 5 1174 450 0 0 0 chr12 77254262 77254312 -44003218 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1174 1454 65 16 16 chr12 77254405 77254592 -44002938 - B2_Mm2 SINE B2 -8 187 1 5 1174 804 233 98 0 chr12 77254693 77254886 -44002644 + B3 SINE B2 5 216 0 5 1174 518 226 34 17 chr12 77255469 77255586 -44001944 - PB1D7 SINE Alu 0 120 2 5 1174 687 25 0 0 chr12 77255796 77255877 -44001653 + (GA)n Simple_repeat Simple_repeat 1 81 0 5 1174 487 213 0 44 chr12 77256233 77256346 -44001184 + B3 SINE B2 1 108 -108 5 1174 429 20 0 0 chr12 77256423 77256473 -44001057 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 5 1174 325 282 120 16 chr12 77256566 77256750 -44000780 - Tigger13a DNA MER2_type -414 357 155 5 1174 211 197 28 14 chr12 77256763 77256835 -44000695 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1174 274 57 0 102 chr12 77257392 77257403 -44000127 + A-rich Low_complexity Low_complexity 2 11 0 5 1174 1219 61 0 0 chr12 77257403 77257550 -43999980 + B1_Mus1 SINE Alu 2 148 0 5 1174 274 57 0 102 chr12 77257550 77257597 -43999933 + A-rich Low_complexity Low_complexity 12 54 0 5 1174 395 43 0 0 chr12 77257597 77257644 -43999886 + (GGA)n Simple_repeat Simple_repeat 1 47 0 5 1174 1354 45 0 11 chr12 77257644 77257672 -43999858 + (GAA)n Simple_repeat Simple_repeat 3 30 0 5 1174 1620 0 0 0 chr12 77257672 77257852 -43999678 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1174 1354 45 0 11 chr12 77257852 77258003 -43999527 + (GAA)n Simple_repeat Simple_repeat 1 150 0 5 1174 597 172 0 33 chr12 77258037 77258157 -43999373 + B3A SINE B2 1 116 -82 5 1174 681 252 27 0 chr12 77258403 77258550 -43998980 + B3A SINE B2 1 151 -47 5 1174 348 24 0 0 chr12 77258557 77258598 -43998932 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1174 1119 75 7 20 chr12 77258648 77258797 -43998733 - B1_Mus1 SINE Alu 0 148 2 5 1174 252 216 20 10 chr12 77258989 77259087 -43998443 + (TA)n Simple_repeat Simple_repeat 1 99 0 5 1174 207 0 0 0 chr12 77259087 77259110 -43998420 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1174 243 0 0 0 chr12 77259112 77259139 -43998391 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1174 354 171 23 136 chr12 77259818 77259906 -43997624 - ID2 SINE ID -3 80 3 5 1174 192 77 0 0 chr12 77260035 77260061 -43997469 + (GAGAA)n Simple_repeat Simple_repeat 2 27 0 5 1174 1400 39 11 0 chr12 77260061 77260239 -43997291 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 5 1174 417 39 0 0 chr12 77260239 77260290 -43997240 + (GGAAA)n Simple_repeat Simple_repeat 1 51 0 5 1174 211 243 57 28 chr12 77260290 77260396 -43997134 + (CAGAGA)n Simple_repeat Simple_repeat 2 110 0 5 1174 239 200 33 0 chr12 77260297 77260357 -43997173 + GA-rich Low_complexity Low_complexity 1 62 0 5 1174 432 0 0 0 chr12 77260627 77260675 -43996855 + (CATA)n Simple_repeat Simple_repeat 4 51 0 5 1174 495 291 38 0 chr12 77260714 77260872 -43996658 + B4A SINE B4 129 292 0 5 1174 386 284 58 42 chr12 77260969 77261232 -43996298 + L1MC3 LINE L1 6604 6876 -1166 5 1174 341 248 83 28 chr12 77261505 77261613 -43995917 + PB1D10 SINE Alu 3 116 -1 5 1174 1156 58 0 11 chr12 77261637 77261813 -43995717 + (TTCC)n Simple_repeat Simple_repeat 1 174 0 5 1174 1293 75 0 0 chr12 77261839 77262013 -43995517 + (TTCC)n Simple_repeat Simple_repeat 4 177 0 5 1174 402 21 0 0 chr12 77262014 77262061 -43995469 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 5 1174 748 180 0 0 chr12 77262061 77262183 -43995347 - B1_Mur4 SINE Alu -28 122 1 5 1174 287 349 63 49 chr12 77262230 77262435 -43995095 - MLT1E3 LTR MaLR -175 449 242 5 1174 301 182 154 13 chr12 77262469 77262547 -43994983 + PB1D9 SINE Alu 1 89 -31 5 1174 189 107 0 0 chr12 77262563 77262591 -43994939 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1174 432 0 0 0 chr12 77262591 77262638 -43994892 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 5 1174 748 229 7 0 chr12 77262638 77262778 -43994752 - B3 SINE B2 -48 168 28 5 1174 555 123 83 15 chr12 77262778 77262910 -43994620 + Lx9 LINE L1 7504 7644 0 5 1174 347 301 11 21 chr12 77262910 77262928 -43994602 - B2_Mm1t SINE B2 -166 27 11 5 1174 449 170 40 0 chr12 77262965 77263065 -43994465 + Lx3C LINE L1 6633 6736 -240 6 1174 303 148 37 0 chr12 77263070 77263124 -43994406 - ID SINE ID -166 58 3 6 1174 792 212 131 0 chr12 77263800 77263998 -43993532 + ID_B1 SINE B4 1 224 0 6 1174 415 247 105 16 chr12 77264097 77264239 -43993291 + ID_B1 SINE B4 85 232 -60 6 1174 501 247 144 97 chr12 77264505 77264783 -43992747 + B4A SINE B4 2 292 0 6 1174 723 248 62 19 chr12 77265856 77266066 -43991464 + ID_B1 SINE B4 3 221 -3 6 1174 378 42 0 0 chr12 77267146 77267194 -43990336 + (GTTTG)n Simple_repeat Simple_repeat 1 48 0 6 1174 49 66 0 0 chr12 77267301 77267392 -43990138 + AT_rich Low_complexity Low_complexity 1 91 0 6 1174 564 142 230 0 chr12 77267403 77267516 -43990014 - B1_Mur2 SINE Alu -6 143 5 6 1174 184 91 45 0 chr12 77267925 77267969 -43989561 + (CAAAC)n Simple_repeat Simple_repeat 2 47 0 6 1174 333 259 9 35 chr12 77268763 77268867 -43988663 + PB1D7 SINE Alu 1 102 -45 6 1174 807 58 16 16 chr12 77268867 77268990 -43988540 + (GAAA)n Simple_repeat Simple_repeat 3 125 0 6 1174 329 259 9 35 chr12 77268990 77269001 -43988529 + B1_Mus2 SINE Alu 103 113 -34 6 1174 1452 44 0 0 chr12 77269024 77269204 -43988326 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1174 191 114 29 0 chr12 77269206 77269241 -43988289 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1174 1167 103 16 5 chr12 77269244 77269430 -43988100 + B2_Mm2 SINE B2 8 195 0 6 1174 258 192 0 0 chr12 77269481 77269533 -43987997 + GA-rich Low_complexity Low_complexity 5 56 0 6 1174 343 307 78 16 chr12 77269552 77269681 -43987849 + RSINE1 SINE B4 16 152 -13 6 1174 644 290 28 42 chr12 77269874 77270090 -43987440 - ID_B1 SINE B4 -6 218 6 6 1174 722 246 59 38 chr12 77270150 77270336 -43987194 - B3 SINE B2 -25 191 2 6 1174 246 62 0 0 chr12 77270646 77270678 -43986852 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 6 1174 227 240 75 62 chr12 77270703 77270783 -43986747 + LTR41B LTR ERVL 102 182 -576 6 1174 419 313 137 24 chr12 77271092 77271347 -43986183 + LTR41B LTR ERVL 475 758 0 6 1174 230 227 21 83 chr12 77271829 77271925 -43985605 - B2_Mm2 SINE B2 -5 190 101 6 1174 402 354 109 26 chr12 77271877 77272144 -43985386 - B4A SINE B4 -2 290 2 6 1174 575 306 72 10 chr12 77272161 77272369 -43985161 - ID_B1 SINE B4 -2 222 2 6 1174 506 272 0 7 chr12 77272399 77272536 -43984994 + B1F2 SINE Alu 1 136 -13 6 1174 1008 68 0 0 chr12 77272539 77272672 -43984858 + (GGAAA)n Simple_repeat Simple_repeat 3 135 0 6 1174 744 223 72 0 chr12 77273085 77273251 -43984279 - B3 SINE B2 -1 215 38 6 1174 300 238 32 0 chr12 77273271 77273334 -43984196 + B4 SINE B4 3 67 -225 6 1174 369 286 133 15 chr12 77273388 77273523 -43984007 + RSINE1 SINE B4 12 162 -3 6 1174 378 129 0 0 chr12 77273535 77273597 -43983933 + (CATA)n Simple_repeat Simple_repeat 1 62 0 6 1174 209 161 0 0 chr12 77273609 77273640 -43983890 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 1174 4128 17 0 4 chr12 77273642 77274108 -43983422 + L1Md_T LINE L1 6119 6582 0 6 1174 1034 199 0 0 chr12 77274124 77274305 -43983225 + B3A SINE B2 2 182 -16 6 1174 293 254 0 0 chr12 77274372 77274427 -43983103 + B4 SINE B4 238 292 0 6 1174 890 281 5 5 chr12 77275777 77275999 -43981531 - ID_B1 SINE B4 -2 222 1 6 1174 22 94 0 0 chr12 77276591 77276655 -43980875 + AT_rich Low_complexity Low_complexity 1 64 0 6 1174 888 172 111 5 chr12 77276915 77277114 -43980416 - URR1B DNA MER1_type -1 224 5 6 1174 252 59 0 0 chr12 77277436 77277470 -43980060 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1174 190 171 13 91 chr12 77278457 77278534 -43978996 - MER5A DNA MER1_type -106 83 13 6 1174 222 37 0 0 chr12 77278796 77278823 -43978707 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 6 1174 513 141 0 0 chr12 77278823 77278908 -43978622 + (A)n Simple_repeat Simple_repeat 1 85 0 6 1174 359 241 0 11 chr12 77279331 77279419 -43978111 - B3A SINE B2 -111 87 1 6 1174 192 40 0 0 chr12 77279462 77279487 -43978043 + (G)n Simple_repeat Simple_repeat 1 25 0 6 1174 1218 41 0 7 chr12 77279667 77279815 -43977715 + B1_Mus1 SINE Alu 2 148 0 6 1174 732 202 18 31 chr12 77280247 77280410 -43977120 + B3 SINE B2 50 210 -6 6 1174 218 186 0 23 chr12 77280501 77280545 -43976985 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1174 201 325 26 0 chr12 77280698 77280775 -43976755 - MIRb SINE MIR -78 190 112 6 1174 1026 124 0 0 chr12 77280879 77281405 -43976125 + (TG)n Simple_repeat Simple_repeat 1 526 0 6 1174 1476 215 106 5 chr12 77281412 77281781 -43975749 - MTD LTR MaLR -12 407 2 6 1174 442 198 18 54 chr12 77281873 77281985 -43975545 - B1F SINE Alu -5 144 37 6 1174 431 283 40 1 chr12 77282000 77282143 -43975387 - MIRb SINE MIR -111 157 9 6 1174 691 212 0 33 chr12 77282151 77282302 -43975228 + B1_Mus2 SINE Alu 1 146 -1 6 1174 882 135 0 7 chr12 77284118 77284260 -43973270 + B1_Mur4 SINE Alu 10 150 0 6 1174 471 78 0 0 chr12 77284289 77284353 -43973177 + (GGGA)n Simple_repeat Simple_repeat 4 67 0 6 1174 1229 60 0 12 chr12 77284353 77284521 -43973009 + (GAAA)n Simple_repeat Simple_repeat 1 166 0 6 1174 1688 36 0 0 chr12 77284521 77284713 -43972817 + B2_Mm1t SINE B2 1 192 -1 6 1174 1163 99 12 0 chr12 77284732 77284903 -43972627 + B2_Mm1t SINE B2 7 179 -14 6 1174 276 102 290 89 chr12 77284935 77285059 -43972471 + B2_Mm2 SINE B2 47 195 0 6 1174 1257 27 7 0 chr12 77285060 77285206 -43972324 + B1_Mus2 SINE Alu 1 147 0 6 1174 240 130 0 0 chr12 77285208 77285254 -43972276 + (A)n Simple_repeat Simple_repeat 1 46 0 6 1174 207 0 0 0 chr12 77285254 77285277 -43972253 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 6 1174 190 189 0 0 chr12 77285962 77285999 -43971531 - MIRc SINE MIR -120 148 112 6 1174 285 296 61 121 chr12 77287003 77287083 -43970447 + RSINE1 SINE B4 11 88 -77 6 1174 1343 89 10 30 chr12 77287083 77287281 -43970249 + B2_Mm2 SINE B2 1 194 -1 6 1174 285 296 61 121 chr12 77287281 77287365 -43970165 + RSINE1 SINE B4 89 164 -1 6 1174 419 123 137 0 chr12 77287493 77287566 -43969964 + B1_Mur4 SINE Alu 62 144 -6 6 1174 443 231 0 27 chr12 77287595 77287706 -43969824 + L1MA6 LINE L1 6028 6135 -165 6 1174 370 250 111 88 chr12 77287826 77287966 -43969564 + L1MA5 LINE L1 6126 6278 -22 6 1174 1155 188 0 33 chr12 77287966 77288181 -43969349 - B3 SINE B2 -8 208 1 6 1174 370 250 111 88 chr12 77288181 77288211 -43969319 + L1MA5 LINE L1 6279 6300 0 6 1174 189 171 0 0 chr12 77288235 77288270 -43969260 + A-rich Low_complexity Low_complexity 3 37 0 6 1174 291 215 111 25 chr12 77288805 77288886 -43968644 + PB1D10 SINE Alu 9 96 -21 6 1174 198 351 136 19 chr12 77289218 77289372 -43968158 - MIRb SINE MIR -79 189 18 6 1174 924 216 198 0 chr12 77289653 77289926 -43967604 - MTD LTR MaLR -92 327 1 6 1174 230 346 0 0 chr12 77290247 77290325 -43967205 - ID4_ SINE ID -3 80 3 6 1174 1083 99 0 0 chr12 77290409 77291270 -43966260 + (TG)n Simple_repeat Simple_repeat 1 861 0 6 1174 631 264 164 8 chr12 77291298 77291542 -43965988 - B4A SINE B4 -10 282 1 6 1174 241 224 14 43 chr12 77291545 77291615 -43965915 - PB1 SINE Alu -2 125 58 6 1174 589 186 0 17 chr12 77291597 77291712 -43965818 + B3 SINE B2 104 216 0 6 1174 288 0 0 0 chr12 77291747 77291779 -43965751 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1174 1159 62 0 14 chr12 77291883 77292031 -43965499 - B1_Mus2 SINE Alu 0 147 2 6 1174 806 167 7 7 chr12 77292204 77292343 -43965187 - B1_Mur1 SINE Alu -6 143 5 6 1174 531 45 0 0 chr12 77292786 77292852 -43964678 + (TTTTC)n Simple_repeat Simple_repeat 5 70 0 6 1174 273 57 0 0 chr12 77292852 77292887 -43964643 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1174 6454 38 4 6 chr12 77292903 77293679 -43963851 + L1Md_F2 LINE L1 5809 6582 0 6 1174 428 181 117 29 chr12 77293715 77293852 -43963678 - RMER10B LTR ERVL -58 340 192 6 1174 538 252 48 8 chr12 77294410 77294534 -43962996 + B1F SINE Alu 3 131 -18 6 1174 312 221 19 213 chr12 77294575 77294639 -43962891 + ID_B1 SINE B4 100 142 -82 6 1174 495 175 165 0 chr12 77294639 77294742 -43962788 + PB1D9 SINE Alu 1 120 0 6 1174 312 221 19 213 chr12 77294742 77294832 -43962698 + ID_B1 SINE B4 143 224 0 6 1174 687 266 0 39 chr12 77294841 77295021 -43962509 + B3A SINE B2 6 178 -20 6 1174 360 0 0 0 chr12 77295171 77295211 -43962319 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1174 671 196 158 46 chr12 77295262 77295502 -43962028 - RLTR21 LTR ERVK -159 1413 1147 6 1174 681 243 109 178 chr12 77295470 77295507 -43962023 - RMER12B LTR ERVK -144 1260 1198 6 1174 435 19 0 0 chr12 77295507 77295559 -43961971 + (CATA)n Simple_repeat Simple_repeat 3 54 0 6 1174 681 243 109 178 chr12 77295559 77295719 -43961811 - RMER12B LTR ERVK -207 1197 1024 6 1174 801 52 59 17 chr12 77295719 77295837 -43961693 - B2_Mm2 SINE B2 -15 180 58 6 1174 681 243 109 178 chr12 77295837 77296191 -43961339 - RMER12B LTR ERVK -207 1023 637 6 1174 759 139 166 0 chr12 77296190 77296341 -43961189 - RMER12B LTR ERVK -1228 176 1 6 1174 715 277 15 15 chr12 77296341 77296526 -43961004 + B3 SINE B2 26 210 -6 6 1174 450 138 12 12 chr12 77296560 77296641 -43960889 + B1_Mur1 SINE Alu 42 122 -27 6 1174 892 224 20 5 chr12 77296643 77296845 -43960685 + B3 SINE B2 11 215 -1 6 1174 346 206 125 19 chr12 77296864 77296968 -43960562 + B1F2 SINE Alu 1 115 -34 6 1174 500 0 0 16 chr12 77298073 77298134 -43959396 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 6 1174 1581 173 54 32 chr12 77298399 77298769 -43958761 + RMER12 LTR ERVK 388 765 -557 6 1174 324 0 0 0 chr12 77298771 77298807 -43958723 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1174 512 54 40 0 chr12 77298823 77298897 -43958633 + (TTTCC)n Simple_repeat Simple_repeat 3 79 0 7 1174 489 246 8 23 chr12 77298898 77299027 -43958503 + RMER12 LTR ERVK 994 1120 -202 6 1174 348 109 10 42 chr12 77299049 77299145 -43958385 + T-rich Low_complexity Low_complexity 2 94 0 7 1174 671 228 37 51 chr12 77299225 77299442 -43958088 + RMER12 LTR ERVK 1109 1322 0 6 1174 303 230 40 0 chr12 77300068 77300142 -43957388 - PB1D10 SINE Alu -17 100 24 7 1174 216 0 0 0 chr12 77300348 77300372 -43957158 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 7 1174 1219 44 0 0 chr12 77300381 77300541 -43956989 - B2_Mm2 SINE B2 -35 160 1 7 1174 554 224 0 33 chr12 77300541 77300661 -43956869 - RSINE1 SINE B4 -45 120 5 7 1174 249 308 43 32 chr12 77300685 77300779 -43956751 - PB1 SINE Alu -23 104 10 7 1174 344 211 0 0 chr12 77301289 77301360 -43956170 + B1F SINE Alu 68 138 -11 7 1174 460 166 30 221 chr12 77301599 77301797 -43955733 + B2_Mm2 SINE B2 1 179 -37 7 1174 315 275 0 0 chr12 77301935 77302044 -43955486 + (CA)n Simple_repeat Simple_repeat 2 110 0 7 1174 435 266 150 75 chr12 77302610 77302831 -43954699 + RMER5 LTR ERV1 88 329 -205 7 1174 2861 103 17 69 chr12 77302831 77303309 -43954221 - RLTR11B LTR ERVK 0 453 1 7 1174 435 266 150 75 chr12 77303309 77303327 -43954203 + RMER5 LTR ERV1 330 345 -189 7 1174 678 193 29 7 chr12 77303346 77303482 -43954048 + B3 SINE B2 58 196 -20 7 1174 495 0 0 0 chr12 77303482 77303537 -43953993 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 7 1174 872 200 67 43 chr12 77303540 77303749 -43953781 + B3 SINE B2 3 216 0 7 1174 709 182 13 47 chr12 77303771 77303795 -43953735 + B1_Mur1 SINE Alu 2 26 -123 7 1174 1836 122 167 6 chr12 77303795 77303952 -43953578 + RMER17C LTR ERVK 1 187 -223 7 1174 643 24 24 0 chr12 77303952 77304037 -43953493 + (TC)n Simple_repeat Simple_repeat 2 88 0 7 1174 1836 122 167 6 chr12 77304037 77304232 -43953298 + RMER17C LTR ERVK 188 409 -1 7 1174 709 182 13 47 chr12 77304232 77304357 -43953173 + B1_Mur1 SINE Alu 27 146 -3 7 1174 640 207 90 22 chr12 77304379 77304557 -43952973 + RMER5 LTR ERV1 343 532 -2 7 1174 596 250 7 0 chr12 77305371 77305519 -43952011 - B1_Mur1 SINE Alu 0 149 1 7 1174 895 121 56 14 chr12 77305550 77305693 -43951837 + B1_Mur4 SINE Alu 1 149 -1 7 1174 648 218 38 38 chr12 77305770 77305956 -43951574 + B2_Mm2 SINE B2 2 187 -8 7 1174 389 255 88 0 chr12 77306335 77306437 -43951093 + PB1D7 SINE Alu 1 111 -9 7 1174 573 277 53 24 chr12 77306463 77306670 -43950860 + B3 SINE B2 2 214 -2 7 1174 488 134 372 7 chr12 77306836 77306981 -43950549 + URR1B DNA MER1_type 1 198 -27 7 1174 288 233 0 0 chr12 77307062 77307135 -43950395 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 1174 1408 74 10 40 chr12 77308400 77308598 -43948932 + B2_Mm1t SINE B2 1 192 -1 7 1174 919 114 7 0 chr12 77308634 77308774 -43948756 + B1_Mur4 SINE Alu 10 150 0 7 1174 222 118 0 0 chr12 77308774 77308808 -43948722 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1174 729 241 40 20 chr12 77308951 77309150 -43948380 - ID_B1 SINE B4 -7 217 15 7 1174 23 0 0 0 chr12 77309164 77309187 -43948343 + AT_rich Low_complexity Low_complexity 1 23 0 7 1174 195 164 16 32 chr12 77309313 77309376 -43948154 + CT-rich Low_complexity Low_complexity 3 64 0 7 1174 1405 67 16 22 chr12 77309437 77309621 -43947909 - B2_Mm2 SINE B2 -12 183 1 7 1174 1073 210 286 14 chr12 77309754 77310048 -43947482 - ORR1D1 LTR MaLR 0 374 1 7 1174 385 260 59 37 chr12 77310156 77310292 -43947238 + Tigger1 DNA MER2_type 2277 2415 -3 7 1174 2532 83 26 50 chr12 77310488 77310907 -43946623 + RLTR23 LTR ERV1 1 409 -21 7 1174 426 192 200 0 chr12 77310955 77311075 -43946455 + B1_Mur2 SINE Alu 6 149 0 7 1174 782 264 72 0 chr12 77311120 77311313 -43946217 - B3 SINE B2 -9 207 1 7 1174 411 21 0 0 chr12 77311324 77311372 -43946158 + (TTGG)n Simple_repeat Simple_repeat 2 49 0 7 1174 183 229 0 0 chr12 77311424 77311485 -43946045 + A-rich Low_complexity Low_complexity 1 61 0 7 1174 409 226 129 0 chr12 77311486 77311579 -43945951 + B1F2 SINE Alu 29 133 -16 7 1174 681 123 0 0 chr12 77311748 77311854 -43945676 + (TTCC)n Simple_repeat Simple_repeat 4 109 0 7 1174 703 240 5 34 chr12 77311854 77312061 -43945469 + RMER10B LTR ERVL 194 394 -4 7 1174 234 40 38 57 chr12 77312076 77312129 -43945401 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 7 1174 335 283 27 61 chr12 77312375 77312522 -43945008 + B1_Mur1 SINE Alu 1 142 -7 7 1174 220 316 27 109 chr12 77312628 77312686 -43944844 + B4A SINE B4 40 88 -204 7 1174 343 229 40 0 chr12 77312686 77312775 -43944755 + PB1D7 SINE Alu 1 95 -54 7 1174 840 109 42 20 chr12 77312784 77313250 -43944280 + (CA)n Simple_repeat Simple_repeat 1 476 0 7 1174 1124 169 39 29 chr12 77313636 77313843 -43943687 - B3 SINE B2 -4 212 4 7 1174 345 287 3 13 chr12 77313857 77313957 -43943573 - PB1D7 SINE Alu -7 113 14 7 1174 1496 82 5 0 chr12 77313988 77314182 -43943348 + B2_Mm2 SINE B2 1 195 0 7 1174 339 208 135 29 chr12 77314259 77314363 -43943167 - PB1D10 SINE Alu -2 115 1 7 1174 440 290 78 17 chr12 77314383 77314562 -43942968 - MIR SINE MIR -10 252 63 7 1174 22 56 0 0 chr12 77314627 77314663 -43942867 + AT_rich Low_complexity Low_complexity 1 36 0 7 1174 1000 147 0 0 chr12 77314672 77314815 -43942715 + B1_Mus1 SINE Alu 1 143 -5 7 1174 657 203 128 0 chr12 77315135 77315268 -43942262 + B1_Mur4 SINE Alu 1 150 0 7 1174 201 241 0 0 chr12 77315308 77315362 -43942168 + A-rich Low_complexity Low_complexity 5 58 0 7 1174 290 269 15 0 chr12 77315996 77316063 -43941467 - RSINE1 SINE B4 -17 148 81 7 1174 189 0 0 0 chr12 77316116 77316137 -43941393 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1174 1752 157 154 20 chr12 77316207 77316558 -43940972 + RMER10B LTR ERVL 1 398 0 7 1174 287 195 299 0 chr12 77316560 77316637 -43940893 - PB1D10 SINE Alu -17 100 1 7 1174 260 236 0 0 chr12 77316641 77316696 -43940834 + L1MC5 LINE L1 7166 7220 -741 7 1174 342 272 0 47 chr12 77316763 77316848 -43940682 + ID4_ SINE ID 2 82 -1 7 1174 1219 151 8 57 chr12 77316910 77317156 -43940374 + RLTR23 LTR ERV1 168 401 -29 7 1174 198 0 0 0 chr12 77317177 77317199 -43940331 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1174 386 313 20 7 chr12 77317276 77317424 -43940106 - B4A SINE B4 -141 151 2 7 1174 261 0 0 0 chr12 77317432 77317461 -43940069 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1174 464 250 0 32 chr12 77318153 77318277 -43939253 - B1_Mur4 SINE Alu -7 143 24 7 1174 28 48 0 0 chr12 77318288 77318330 -43939200 + AT_rich Low_complexity Low_complexity 1 42 0 7 1174 1853 172 37 18 chr12 77318467 77318847 -43938683 - MTD LTR MaLR -15 404 18 7 1174 347 176 100 56 chr12 77318872 77318962 -43938568 + B1_Mur2 SINE Alu 47 140 -9 7 1174 503 254 39 16 chr12 77318978 77319106 -43938424 + B3A SINE B2 2 132 -66 7 1174 233 221 70 57 chr12 77319107 77319201 -43938329 + L1MB7 LINE L1 5497 5597 -583 7 1174 299 274 142 25 chr12 77319212 77319332 -43938198 + ID_B1 SINE B4 81 214 -10 7 1174 248 254 132 58 chr12 77319225 77319346 -43938184 + B1F SINE Alu 19 148 -1 7 1174 392 198 41 20 chr12 77319577 77319675 -43937855 - RLTR23 LTR ERV1 0 430 331 7 1174 360 294 128 5 chr12 77320123 77320318 -43937212 + L1MB7 LINE L1 5870 6088 -96 7 1174 342 0 0 0 chr12 77320369 77320407 -43937123 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1174 1195 81 0 6 chr12 77320459 77320632 -43936898 + B2_Mm2 SINE B2 1 172 -23 7 1174 4966 104 102 11 chr12 77320632 77321393 -43936137 + RMER16-int LTR ERVK 86 916 -4490 7 1174 3043 123 118 16 chr12 77321393 77321842 -43935688 + Lx LINE L1 6036 6518 -136 7 1174 225 0 0 0 chr12 77321842 77321867 -43935663 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 7 1174 3043 123 118 16 chr12 77321867 77321961 -43935569 + Lx LINE L1 6519 6633 -21 7 1174 258 32 0 0 chr12 77321967 77321998 -43935532 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 1174 1380 174 180 3 chr12 77322004 77322321 -43935209 - MTD LTR MaLR -35 384 12 7 1174 789 89 0 0 chr12 77322337 77322461 -43935069 + (CA)n Simple_repeat Simple_repeat 2 125 0 7 1174 820 170 14 7 chr12 77323146 77323288 -43934242 + B1_Mur2 SINE Alu 1 143 -6 7 1174 2082 77 31 16 chr12 77323331 77323648 -43933882 + RLTRETN_Mm LTR ERVK 1 322 0 7 1174 26405 80 13 17 chr12 77323648 77330106 -43927424 + MMETn-int LTR ERVK 1 7299 -107 7 1174 2052 80 31 16 chr12 77330106 77330423 -43927107 + RLTRETN_Mm LTR ERVK 1 322 0 7 1174 677 256 6 6 chr12 77330423 77330588 -43926942 + B3 SINE B2 16 180 -36 7 1174 477 0 0 0 chr12 77331602 77331655 -43925875 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1174 616 110 195 0 chr12 77331843 77331961 -43925569 + B2_Mm2 SINE B2 1 141 -54 7 1174 189 0 0 0 chr12 77332244 77332265 -43925265 + (CACAG)n Simple_repeat Simple_repeat 5 25 0 7 1175 236 206 43 29 chr12 77332956 77333148 -43924382 + (TGAG)n Simple_repeat Simple_repeat 1 194 0 7 1175 285 197 0 70 chr12 77333401 77333472 -43924058 + B2_Mm1t SINE B2 96 161 -32 7 1175 339 230 0 0 chr12 77333487 77333574 -43923956 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 7 1175 23 33 0 0 chr12 77333590 77333620 -43923910 + AT_rich Low_complexity Low_complexity 1 30 0 7 1175 22 35 0 0 chr12 77333649 77333678 -43923852 + AT_rich Low_complexity Low_complexity 1 29 0 7 1175 1413 77 11 0 chr12 77333678 77333861 -43923669 - B2_Mm1a SINE B2 -8 185 1 7 1175 504 194 192 48 chr12 77333862 77334008 -43923522 + B3 SINE B2 50 216 0 7 1175 457 274 0 8 chr12 77334482 77334600 -43922930 - PB1D10 SINE Alu 0 117 1 7 1175 28 0 0 0 chr12 77334605 77334633 -43922897 + AT_rich Low_complexity Low_complexity 1 28 0 7 1175 1248 86 0 0 chr12 77334654 77334829 -43922701 + (TG)n Simple_repeat Simple_repeat 1 175 0 7 1175 1388 262 46 137 chr12 77334869 77335299 -43922231 + RMER20B LTR ERVK 10 391 -236 7 1175 1149 43 0 0 chr12 77335299 77335438 -43922092 - B1_Mus1 SINE Alu -8 140 2 8 1175 1388 262 46 137 chr12 77335438 77335656 -43921874 + RMER20B LTR ERVK 392 599 -28 7 1175 396 0 0 0 chr12 77335658 77335702 -43921828 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1175 490 256 76 15 chr12 77335710 77335841 -43921689 - RSINE1 SINE B4 -26 139 1 8 1175 231 328 0 15 chr12 77335912 77335980 -43921550 - ID4_ SINE ID -12 71 5 8 1175 259 258 54 43 chr12 77335983 77336076 -43921454 - PB1D7 SINE Alu -26 94 1 8 1175 342 286 17 0 chr12 77336202 77336321 -43921209 + PB1 SINE Alu 1 121 -6 8 1175 447 68 0 0 chr12 77336618 77336677 -43920853 + (CCA)n Simple_repeat Simple_repeat 3 61 0 8 1175 1572 184 128 34 chr12 77337132 77337323 -43920207 + MTD LTR MaLR 2 189 -230 8 1175 1429 45 78 0 chr12 77337323 77337483 -43920047 + B2_Mm1a SINE B2 1 160 -33 8 1175 279 0 0 0 chr12 77337483 77337514 -43920016 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 8 1175 1429 45 78 0 chr12 77337514 77337532 -43919998 + B2_Mm1a SINE B2 161 191 -2 8 1175 1572 184 128 34 chr12 77337532 77337722 -43919808 + MTD LTR MaLR 190 418 -1 8 1175 437 309 5 120 chr12 77337919 77338015 -43919515 - RSINE1 SINE B4 -1 164 83 8 1175 1092 269 62 15 chr12 77338015 77338355 -43919175 + ORR1E LTR MaLR 4 359 0 8 1175 437 309 5 120 chr12 77338355 77338442 -43919088 - RSINE1 SINE B4 -83 82 2 8 1175 813 248 89 0 chr12 77338442 77338653 -43918877 - B4A SINE B4 -62 230 1 8 1175 399 231 86 9 chr12 77338670 77338775 -43918755 - PB1D7 SINE Alu -1 119 7 8 1175 243 61 0 0 chr12 77338848 77338881 -43918649 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1175 616 248 23 0 chr12 77338885 77339018 -43918512 - RSINE1 SINE B4 -29 136 1 8 1175 606 242 19 89 chr12 77339048 77339261 -43918269 + B3A SINE B2 1 198 0 8 1175 553 273 56 0 chr12 77339339 77339500 -43918030 + MLT1B LTR MaLR 221 390 0 8 1175 951 198 107 0 chr12 77340000 77340187 -43917343 - B3 SINE B2 -9 207 1 8 1175 572 304 62 55 chr12 77340917 77341206 -43916324 + B4A SINE B4 2 292 0 8 1175 479 17 17 0 chr12 77341223 77341283 -43916247 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1175 1020 208 0 28 chr12 77341317 77341535 -43915995 + B3 SINE B2 5 216 0 8 1175 290 206 157 136 chr12 77341546 77341737 -43915793 + B2_Mm2 SINE B2 1 195 0 8 1175 320 236 0 9 chr12 77341790 77341862 -43915668 + B1F2 SINE Alu 1 68 -81 8 1175 443 156 44 0 chr12 77341919 77342079 -43915451 + (TG)n Simple_repeat Simple_repeat 1 167 0 8 1175 444 256 297 39 chr12 77342079 77342311 -43915219 - B4 SINE B4 0 292 1 8 1175 250 287 81 0 chr12 77342491 77342578 -43914952 - PB1D10 SINE Alu -3 114 21 8 1175 316 340 82 13 chr12 77342584 77342742 -43914788 + L1MEe LINE L1 245 413 -4441 8 1175 406 218 13 0 chr12 77342745 77342851 -43914679 + B1F SINE Alu 2 109 -40 8 1175 443 107 13 0 chr12 77342852 77342927 -43914603 + (GGA)n Simple_repeat Simple_repeat 1 76 0 8 1175 317 24 0 23 chr12 77343162 77343205 -43914325 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1175 1303 225 79 31 chr12 77343216 77343569 -43913961 + ORR1D2 LTR MaLR 1 370 0 8 1175 29 0 0 0 chr12 77343587 77343616 -43913914 + AT_rich Low_complexity Low_complexity 1 29 0 8 1175 651 143 0 53 chr12 77343625 77343758 -43913772 - B1_Mur2 SINE Alu -1 148 23 8 1175 203 0 0 36 chr12 77343840 77343868 -43913662 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 8 1175 832 175 14 0 chr12 77343872 77344015 -43913515 - B1_Mus1 SINE Alu 0 148 4 8 1175 201 74 0 0 chr12 77344149 77344176 -43913354 + (CATA)n Simple_repeat Simple_repeat 2 28 0 8 1175 284 154 0 0 chr12 77344190 77344242 -43913288 - Lx8 LINE L1 -2 7471 7420 8 1175 418 160 0 0 chr12 77344434 77344509 -43913021 - ID_B1 SINE B4 0 224 150 8 1175 413 118 52 0 chr12 77344508 77344610 -43912920 + URR1A DNA MER1_type 72 225 -1 8 1175 497 258 117 0 chr12 77344998 77345118 -43912412 + RSINE1 SINE B4 3 136 -29 8 1175 330 26 0 0 chr12 77345120 77345159 -43912371 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 8 1175 361 189 198 0 chr12 77345207 77345313 -43912217 + B1F1 SINE Alu 23 149 0 8 1175 548 237 17 0 chr12 77345320 77345438 -43912092 + PB1D7 SINE Alu 1 120 0 8 1175 1372 75 37 11 chr12 77345474 77345664 -43911866 - B2_Mm2 SINE B2 0 195 1 8 1175 406 277 121 15 chr12 77345688 77345820 -43911710 - RSINE1 SINE B4 -2 163 18 8 1175 394 188 20 0 chr12 77346401 77346502 -43911028 + (TA)n Simple_repeat Simple_repeat 2 104 0 8 1175 577 254 72 38 chr12 77346804 77347013 -43910517 - B3 SINE B2 0 216 1 8 1175 350 239 95 26 chr12 77347215 77347331 -43910199 + RSINE1 SINE B4 4 127 -38 8 1175 411 21 0 0 chr12 77347352 77347400 -43910130 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1175 286 246 16 0 chr12 77347400 77347461 -43910069 + RSINE1 SINE B4 101 162 -3 8 1175 297 0 0 0 chr12 77348015 77348048 -43909482 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1175 408 71 0 0 chr12 77348219 77348275 -43909255 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1175 1004 117 0 14 chr12 77348474 77348622 -43908908 + B1_Mus1 SINE Alu 1 146 -2 8 1175 1273 98 49 0 chr12 77348716 77348868 -43908662 + B2_Mm2 SINE B2 2 153 -42 8 1175 501 127 0 0 chr12 77348868 77348947 -43908583 + (TA)n Simple_repeat Simple_repeat 1 79 0 8 1175 1273 98 49 0 chr12 77348947 77348977 -43908553 + B2_Mm2 SINE B2 154 191 -4 8 1175 506 193 48 40 chr12 77349189 77349313 -43908217 + ID_B1 SINE B4 99 223 -1 8 1175 321 47 0 0 chr12 77349313 77349356 -43908174 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1175 911 163 7 7 chr12 77349527 77349675 -43907855 - B1_Mur2 SINE Alu -1 148 1 8 1175 212 0 36 0 chr12 77349955 77349983 -43907547 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1175 225 167 45 0 chr12 77349983 77350043 -43907487 + (TA)n Simple_repeat Simple_repeat 1 63 0 8 1175 701 182 0 8 chr12 77350046 77350173 -43907357 - B1_Mur2 SINE Alu -16 133 8 8 1175 282 271 33 116 chr12 77350076 77350197 -43907333 - MT2B LTR ERVL -344 257 147 8 1175 809 255 0 48 chr12 77350510 77350737 -43906793 + B3 SINE B2 1 216 0 8 1175 198 0 0 0 chr12 77351217 77351239 -43906291 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1175 346 148 0 0 chr12 77351252 77351306 -43906224 - RSINE1 SINE B4 -34 131 78 8 1175 224 264 56 22 chr12 77351404 77351493 -43906037 - RSINE1 SINE B4 -71 94 3 8 1175 737 144 8 0 chr12 77351919 77352051 -43905479 + C-rich Low_complexity Low_complexity 6 138 0 8 1175 667 158 0 17 chr12 77352072 77352188 -43905342 - B1_Mus2 SINE Alu 0 147 34 8 1175 314 214 85 53 chr12 77352109 77352203 -43905327 - MT2B LTR ERVL -337 264 168 8 1175 256 206 83 64 chr12 77352122 77352205 -43905325 - RLTR25B LTR ERVK -529 499 422 8 1175 1082 210 205 6 chr12 77352205 77352517 -43905013 + ORR1D1 LTR MaLR 1 374 0 8 1175 256 206 83 64 chr12 77352517 77352542 -43904988 - RLTR25B LTR ERVK -607 421 389 8 1175 1419 85 16 0 chr12 77353088 77353276 -43904254 + B2_Mm2 SINE B2 1 191 -4 8 1175 690 241 24 0 chr12 77353296 77353462 -43904068 - B3A SINE B2 -15 183 14 8 1175 833 115 0 0 chr12 77353487 77353609 -43903921 + B1_Mur3 SINE Alu 23 144 -5 8 1175 278 259 24 12 chr12 77353634 77353716 -43903814 + ID4 SINE ID 1 83 0 8 1175 253 225 20 119 chr12 77353743 77353844 -43903686 + L1MB7 LINE L1 6051 6141 -43 8 1175 213 183 16 62 chr12 77354038 77354102 -43903428 + BC1_Mm scRNA scRNA 7 67 -85 8 1175 839 158 7 14 chr12 77356960 77357108 -43900422 - B1_Mur3 SINE Alu -1 148 2 8 1175 201 74 0 0 chr12 77357836 77357863 -43899667 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 8 1175 508 266 14 34 chr12 77357868 77358016 -43899514 - ID_B1 SINE B4 0 224 80 8 1175 864 164 30 0 chr12 77358030 77358164 -43899366 - B1_Mus2 SINE Alu -6 141 4 8 1175 656 251 32 32 chr12 77358196 77358385 -43899145 + B3A SINE B2 3 191 -7 8 1175 302 245 175 6 chr12 77358659 77358819 -43898711 - L1MA9 LINE L1 -374 5938 5752 8 1175 439 273 22 0 chr12 77358923 77359062 -43898468 - L1MA9 LINE L1 -569 5743 5602 8 1175 1661 21 5 10 chr12 77359063 77359257 -43898273 - B2_Mm1t SINE B2 0 193 1 8 1175 764 168 220 23 chr12 77359359 77359536 -43897994 - B3 SINE B2 -4 212 1 8 1175 378 0 0 0 chr12 77359549 77359591 -43897939 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1175 752 199 0 7 chr12 77359591 77359728 -43897802 - B1_Mus2 SINE Alu -10 137 2 8 1175 301 258 31 41 chr12 77359954 77360051 -43897479 - L1MA9 LINE L1 -705 5607 5512 8 1175 248 286 150 9 chr12 77360125 77360238 -43897292 - RSINE1 SINE B4 -29 136 8 8 1175 233 116 47 0 chr12 77360290 77360333 -43897197 - L1M5 LINE L1 -705 5457 5413 8 1175 908 192 97 10 chr12 77360616 77360811 -43896719 + B3 SINE B2 4 215 -1 8 1175 265 270 53 39 chr12 77360867 77360971 -43896559 + MIR SINE MIR 72 173 -89 8 1175 376 292 17 26 chr12 77360992 77361108 -43896422 - PB1D9 SINE Alu 0 120 6 8 1175 1436 60 11 16 chr12 77361123 77361310 -43896220 - B2_Mm1t SINE B2 -7 186 1 8 1175 186 301 14 14 chr12 77361311 77361385 -43896145 + MIR SINE MIR 185 258 -4 8 1175 231 208 0 0 chr12 77361479 77361527 -43896003 + MER5B DNA MER1_type 1 48 -130 8 1175 551 276 0 0 chr12 77361553 77361680 -43895850 + RSINE1 SINE B4 3 129 -36 8 1175 2945 133 122 14 chr12 77361684 77362193 -43895337 + RLTR12A LTR ERVK 1 564 -4 8 1175 636 102 0 0 chr12 77362232 77362330 -43895200 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 8 1175 410 252 27 27 chr12 77362340 77362450 -43895080 + ID_B1 SINE B4 87 196 -28 8 1175 4207 177 39 29 chr12 77362433 77363376 -43894154 - ORR1A2-int LTR MaLR -839 953 1 8 1175 1027 142 56 0 chr12 77363380 77363577 -43893953 - ORR1A2 LTR MaLR -8 319 112 8 1175 503 237 41 92 chr12 77363620 77363840 -43893690 - ID_B1 SINE B4 0 224 25 8 1175 273 239 84 56 chr12 77363904 77364046 -43893484 - RSINE1 SINE B4 0 165 20 9 1175 816 199 0 0 chr12 77364404 77364545 -43892985 - B1_Mur3 SINE Alu -8 141 1 9 1175 488 264 40 40 chr12 77364430 77364552 -43892978 - B4 SINE B4 -88 204 79 9 1175 420 265 61 0 chr12 77364552 77364684 -43892846 - B1F1 SINE Alu -7 142 3 9 1175 488 264 40 40 chr12 77364684 77364711 -43892819 - B4 SINE B4 -214 78 55 9 1175 234 276 84 30 chr12 77365591 77365722 -43891808 + MER102a DNA MER1_type 11 148 -182 9 1175 254 286 39 0 chr12 77365752 77365829 -43891701 - ID4_ SINE ID -2 81 2 9 1175 183 42 0 0 chr12 77365928 77365952 -43891578 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 9 1175 442 95 0 119 chr12 77365996 77366029 -43891501 - ORR1B1 LTR MaLR -1 393 368 9 1175 2398 126 88 19 chr12 77366029 77366450 -43891080 - RLTR11B LTR ERVK 0 453 4 9 1175 442 95 0 119 chr12 77366450 77366500 -43891030 - ORR1B1 LTR MaLR -27 367 320 9 1175 853 159 27 27 chr12 77366500 77366649 -43890881 - B1_Mur4 SINE Alu 0 150 2 9 1175 443 224 0 0 chr12 77366762 77366847 -43890683 + B1_Mur4 SINE Alu 2 86 -64 9 1175 1308 152 107 4 chr12 77366839 77367083 -43890447 - ORR1B1 LTR MaLR -124 270 2 9 1175 264 258 16 179 chr12 77367142 77367265 -43890265 - B1F SINE Alu -40 109 7 9 1175 316 220 0 0 chr12 77367330 77367389 -43890141 + B3 SINE B2 23 81 -135 9 1175 216 163 0 0 chr12 77367389 77367432 -43890098 + (TA)n Simple_repeat Simple_repeat 2 44 0 9 1175 612 155 38 15 chr12 77367436 77367567 -43889963 + B3 SINE B2 83 216 0 9 1175 528 234 22 14 chr12 77367678 77367817 -43889713 - RSINE1 SINE B4 -22 143 4 9 1175 198 0 0 0 chr12 77367830 77367852 -43889678 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 9 1175 579 152 39 29 chr12 77367852 77367954 -43889576 - B1_Mur2 SINE Alu -10 139 37 9 1175 540 264 50 7 chr12 77368791 77368932 -43888598 + RSINE1 SINE B4 7 153 -12 9 1175 686 177 16 0 chr12 77368945 77369069 -43888461 - B1_Mur1 SINE Alu -1 148 23 9 1175 232 267 57 57 chr12 77369779 77369902 -43887628 + L2 LINE L2 2757 2879 -540 9 1175 210 71 0 0 chr12 77370111 77370139 -43887391 + (TTCTCC)n Simple_repeat Simple_repeat 3 30 0 9 1175 279 225 66 90 chr12 77370253 77370375 -43887155 - PB1D9 SINE Alu -1 119 1 9 1175 402 291 9 0 chr12 77370266 77370376 -43887154 - ID_B1 SINE B4 -33 191 81 9 1175 314 324 58 22 chr12 77370812 77370951 -43886579 - B1F1 SINE Alu -1 148 5 9 1175 418 178 11 22 chr12 77370959 77371051 -43886479 - ID_B1 SINE B4 -1 223 133 9 1175 874 251 18 5 chr12 77371698 77371918 -43885612 - ID_B1 SINE B4 0 224 2 9 1175 1320 96 32 0 chr12 77371952 77372139 -43885391 - B2_Mm1t SINE B2 0 193 1 9 1175 254 140 88 0 chr12 77372255 77372312 -43885218 - B1F1 SINE Alu 0 149 88 9 1175 1047 133 61 10 chr12 77372284 77372482 -43885048 + RLTR11A LTR ERVK 321 528 0 9 1175 27 29 0 0 chr12 77372509 77372543 -43884987 + AT_rich Low_complexity Low_complexity 1 34 0 9 1175 218 163 23 0 chr12 77372726 77372769 -43884761 - PB1D10 SINE Alu -9 108 65 9 1175 849 198 10 25 chr12 77373038 77373240 -43884290 - MTC LTR MaLR -93 328 130 9 1175 373 254 8 120 chr12 77373253 77373378 -43884152 + PB1D7 SINE Alu 5 115 -5 9 1175 647 124 0 16 chr12 77373454 77373577 -43883953 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 9 1175 814 52 9 0 chr12 77373582 77373698 -43883832 + B1_Mus2 SINE Alu 31 147 0 9 1175 582 148 28 9 chr12 77373708 77373817 -43883713 - MTC LTR MaLR -301 120 10 9 1175 220 195 49 0 chr12 77373815 77373856 -43883674 - RSINE1 SINE B4 -57 108 66 9 1175 212 373 15 0 chr12 77373921 77373988 -43883542 + ID4 SINE ID 5 72 -11 9 1175 1094 177 23 5 chr12 77374000 77374216 -43883314 - MTD LTR MaLR -194 225 6 9 1175 282 283 45 36 chr12 77374247 77374357 -43883173 - PB1D7 SINE Alu 0 120 10 9 1175 763 307 65 46 chr12 77374358 77374816 -43882714 - Charlie1 DNA MER1_type -877 1904 1438 9 1175 266 186 194 28 chr12 77375144 77375216 -43882314 - B1F SINE Alu -50 99 16 9 1175 21 0 0 0 chr12 77375592 77375613 -43881917 + AT_rich Low_complexity Low_complexity 1 21 0 9 1175 436 208 13 0 chr12 77375746 77375823 -43881707 + ID4 SINE ID 2 79 -4 9 1175 257 128 21 0 chr12 77375846 77375893 -43881637 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1175 306 323 24 8 chr12 77376311 77376436 -43881094 - ID_B1 SINE B4 -17 207 81 9 1175 268 300 0 0 chr12 77376643 77376713 -43880817 + PB1D10 SINE Alu 12 81 -36 9 1175 219 103 0 0 chr12 77376719 77376758 -43880772 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1175 830 209 115 6 chr12 77376903 77377086 -43880444 - B3 SINE B2 -10 206 4 9 1175 183 80 0 0 chr12 77377944 77377969 -43879561 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 9 1175 365 254 95 17 chr12 77378758 77378874 -43878656 - ID_B1 SINE B4 -6 218 94 9 1175 662 250 0 0 chr12 77378875 77379019 -43878511 + B1_Mur1 SINE Alu 6 149 0 9 1175 285 235 32 86 chr12 77379087 77379180 -43878350 + PB1D10 SINE Alu 21 108 -9 9 1175 306 246 0 42 chr12 77379157 77379229 -43878301 - B1F SINE Alu -57 92 24 9 1175 2645 71 3 0 chr12 77380759 77381085 -43876445 - ORR1A2 LTR MaLR 0 327 1 9 1175 204 308 0 0 chr12 77382080 77382132 -43875398 - MIRb SINE MIR -181 87 36 9 1175 216 289 0 62 chr12 77382687 77382768 -43874762 - ID4 SINE ID -4 79 4 9 1175 279 191 0 0 chr12 77384811 77384874 -43872656 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1175 213 121 0 0 chr12 77385221 77385254 -43872276 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 9 1175 742 282 7 115 chr12 77385398 77385511 -43872019 + Tigger7 DNA MER2_type 1 98 -2393 9 1175 719 204 28 0 chr12 77385511 77385653 -43871877 - B1_Mur1 SINE Alu -1 148 3 9 1175 742 282 7 115 chr12 77385653 77385835 -43871695 + Tigger7 DNA MER2_type 99 264 -2227 9 1175 624 137 0 0 chr12 77385894 77385996 -43871534 + (TA)n Simple_repeat Simple_repeat 2 103 0 9 1175 321 68 0 0 chr12 77386094 77386138 -43871392 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 9 1175 237 293 0 0 chr12 77386147 77386205 -43871325 - tRNA-Ala-GCY_ tRNA tRNA -12 63 6 9 1175 229 292 56 0 chr12 77386840 77386912 -43870618 + ID4_ SINE ID 2 77 -6 9 1175 212 318 0 16 chr12 77387268 77387332 -43870198 + BC1_Mm scRNA scRNA 5 67 -85 9 1175 3576 40 0 0 chr12 77387350 77387771 -43869759 + L1Md_T LINE L1 6150 6570 -12 9 1175 547 104 125 0 chr12 77387774 77387870 -43869660 + B1_Mur4 SINE Alu 43 150 0 9 1175 432 221 0 13 chr12 77387994 77388072 -43869458 - ID4 SINE ID -4 79 3 9 1175 24 0 0 0 chr12 77388892 77388916 -43868614 + AT_rich Low_complexity Low_complexity 1 24 0 9 1175 39 60 0 0 chr12 77389464 77389531 -43867999 + AT_rich Low_complexity Low_complexity 1 67 0 9 1175 242 272 0 14 chr12 77389619 77389690 -43867840 - ID4 SINE ID -10 73 9 9 1175 210 37 0 0 chr12 77390952 77390979 -43866551 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1175 1035 37 72 22 chr12 77390979 77391107 -43866423 - B1_Mus2 SINE Alu -9 138 1 9 1175 627 196 19 0 chr12 77391203 77391310 -43866220 + B3 SINE B2 108 216 0 9 1175 684 208 133 38 chr12 77391339 77391541 -43865989 + B3 SINE B2 1 191 -4 9 1175 269 339 18 35 chr12 77391632 77391745 -43865785 - RSINE1 SINE B4 0 165 55 9 1175 485 186 32 96 chr12 77391756 77391881 -43865649 - B3A SINE B2 -81 117 1 9 1175 212 224 118 15 chr12 77392435 77392503 -43865027 - MIRb SINE MIR -14 254 180 9 1175 267 31 0 0 chr12 77392574 77392606 -43864924 + (TTAG)n Simple_repeat Simple_repeat 3 34 0 9 1175 398 310 77 8 chr12 77392644 77392774 -43864756 - RSINE1 SINE B4 -23 142 4 9 1175 849 149 14 0 chr12 77392821 77392962 -43864568 + URR1A DNA MER1_type 81 223 -3 9 1175 377 263 112 8 chr12 77393564 77393698 -43863832 - B1F SINE Alu 0 149 2 9 1175 333 0 0 0 chr12 77394495 77394532 -43862998 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1175 302 161 54 0 chr12 77394919 77394975 -43862555 - B1F SINE Alu -50 99 41 9 1175 364 303 118 41 chr12 77395781 77396062 -43861468 - B4A SINE B4 -16 276 2 9 1175 498 305 11 28 chr12 77396078 77396257 -43861273 + L1MD LINE L1 5603 5778 -581 9 1175 262 265 43 29 chr12 77396258 77396328 -43861202 + Kanga1 DNA Tc2 1095 1165 -580 9 1175 266 227 101 51 chr12 77396621 77396700 -43860830 - ID2 SINE ID 0 83 1 9 1175 333 0 0 0 chr12 77396744 77396781 -43860749 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1175 845 203 0 0 chr12 77396787 77396940 -43860590 - B3 SINE B2 -62 154 2 9 1175 953 110 0 0 chr12 77397337 77397473 -43860057 + B1_Mus1 SINE Alu 7 142 -6 9 1175 490 230 73 80 chr12 77397340 77397491 -43860039 + B4 SINE B4 94 243 -49 9 1175 566 233 8 24 chr12 77398133 77398256 -43859274 - MTE2a LTR MaLR -64 315 195 9 1175 466 15 0 43 chr12 77398271 77398340 -43859190 + (GTTTG)n Simple_repeat Simple_repeat 3 68 0 9 1175 467 188 12 0 chr12 77398348 77398428 -43859102 - B1_Mm SINE Alu -36 111 31 9 1175 435 184 243 0 chr12 77399213 77399316 -43858214 - ID_B1 SINE B4 -4 220 93 9 1175 23 0 0 0 chr12 77399329 77399352 -43858178 + AT_rich Low_complexity Low_complexity 1 23 0 9 1175 1123 186 44 10 chr12 77399353 77399559 -43857971 - B3 SINE B2 -3 213 1 9 1175 921 228 23 23 chr12 77399571 77399787 -43857743 - B3 SINE B2 0 216 1 9 1175 717 231 0 20 chr12 77400878 77401024 -43856506 + B1_Mur2 SINE Alu 5 147 -2 9 1175 285 29 0 0 chr12 77401038 77401072 -43856458 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1175 413 286 0 19 chr12 77401141 77401248 -43856282 - PB1D10 SINE Alu -2 115 11 1 1175 185 0 40 0 chr12 77401260 77401285 -43856245 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 1 1175 716 207 104 20 chr12 77401853 77402055 -43855475 - ID_B1 SINE B4 -1 223 5 1 1175 574 144 72 137 chr12 77402778 77402931 -43854599 - B1_Mur2 SINE Alu -2 147 5 1 1175 815 152 0 0 chr12 77403008 77403133 -43854397 - URR1B DNA MER1_type -3 222 98 1 1175 444 276 7 58 chr12 77404148 77404302 -43853228 - RSINE1 SINE B4 -17 148 3 1 1175 372 250 0 0 chr12 77404396 77404472 -43853058 + ID4_ SINE ID 1 76 -7 1 1175 550 120 306 0 chr12 77405612 77405684 -43851846 - B1_Mur3 SINE Alu -8 141 41 1 1175 653 36 0 12 chr12 77405684 77405769 -43851761 + (TCC)n Simple_repeat Simple_repeat 3 86 0 1 1175 550 120 306 0 chr12 77405769 77405804 -43851726 - B1_Mur3 SINE Alu -109 40 2 1 1175 2030 160 64 16 chr12 77406015 77406389 -43851141 - ORR1B1 LTR MaLR 0 394 3 1 1175 433 235 104 13 chr12 77406458 77406680 -43850850 - Charlie1a DNA MER1_type -30 1425 1137 1 1175 222 62 0 0 chr12 77407044 77407076 -43850454 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1175 342 213 0 0 chr12 77407165 77407226 -43850304 - RMER30 DNA MER1_type -137 65 5 1 1175 260 244 99 11 chr12 77407644 77407735 -43849795 - ID_B1 SINE B4 -30 194 96 1 1175 254 247 21 96 chr12 77408458 77408552 -43848978 - B1_Mur1 SINE Alu -3 146 60 1 1175 424 318 101 7 chr12 77408552 77408701 -43848829 + MER20 DNA MER1_type 57 219 0 1 1175 421 357 57 36 chr12 77409463 77409655 -43847875 + ID_B1 SINE B4 14 209 -15 1 1175 318 333 0 0 chr12 77409702 77409780 -43847750 + RSINE1 SINE B4 71 148 -17 1 1175 729 141 164 0 chr12 77409828 77409956 -43847574 + B1_Mur2 SINE Alu 1 149 0 1 1175 252 333 0 0 chr12 77409989 77410061 -43847469 + B4A SINE B4 85 156 -136 1 1175 364 255 128 0 chr12 77409999 77410093 -43847437 + PB1D10 SINE Alu 10 115 -2 1 1175 1019 175 38 11 chr12 77410099 77410284 -43847246 + B3 SINE B2 20 209 -7 1 1175 718 228 13 7 chr12 77410324 77410474 -43847056 + B3 SINE B2 9 159 -57 1 1175 411 113 0 0 chr12 77410480 77410542 -43846988 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1 1175 407 299 66 15 chr12 77410669 77410805 -43846725 - B4A SINE B4 -149 143 1 1 1175 618 253 181 0 chr12 77410844 77411026 -43846504 - B3 SINE B2 0 216 2 1 1175 522 258 30 59 chr12 77411043 77411245 -43846285 - B3A SINE B2 -1 197 2 1 1175 468 235 10 10 chr12 77411697 77411800 -43845730 - PB1D10 SINE Alu -2 115 13 1 1175 310 330 64 16 chr12 77412485 77412710 -43844820 - MIR SINE MIR -5 263 24 1 1175 965 257 52 10 chr12 77413621 77413884 -43843646 + B4A SINE B4 2 272 -20 1 1175 294 29 0 0 chr12 77413908 77413943 -43843587 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1175 1400 78 5 20 chr12 77413981 77414177 -43843353 - B2_Mm1a SINE B2 0 193 1 1 1175 643 250 22 0 chr12 77414936 77415072 -43842458 + RSINE1 SINE B4 3 141 -24 1 1175 201 39 0 0 chr12 77415123 77415149 -43842381 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1175 290 266 12 71 chr12 77415177 77415262 -43842268 + ID4_ SINE ID 4 83 0 1 1175 637 181 58 43 chr12 77416405 77416544 -43840986 + B1F2 SINE Alu 5 145 -4 1 1175 234 317 0 0 chr12 77416730 77416790 -43840740 + MER2 DNA MER2_type 124 183 -162 1 1175 267 217 16 48 chr12 77416792 77416855 -43840675 + ID4 SINE ID 21 81 -2 1 1175 272 245 58 58 chr12 77417768 77417872 -43839658 - B1F1 SINE Alu -1 148 45 1 1175 606 165 35 0 chr12 77418198 77418368 -43839162 + (TG)n Simple_repeat Simple_repeat 2 177 0 1 1175 480 315 6 95 chr12 77418379 77418558 -43838972 - RSINE1 SINE B4 0 165 3 1 1175 587 178 161 0 chr12 77419264 77419382 -43838148 + B1_Mur4 SINE Alu 3 139 -11 1 1175 279 0 0 0 chr12 77419392 77419423 -43838107 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 1 1175 403 107 12 12 chr12 77419425 77419510 -43838020 + (CAGG)n Simple_repeat Simple_repeat 2 86 0 1 1175 349 296 151 39 chr12 77419856 77420088 -43837442 + HAL1 LINE L1 1506 1763 -744 1 1175 240 200 0 0 chr12 77420502 77420552 -43836978 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 1 1175 549 30 0 0 chr12 77421134 77421201 -43836329 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1175 385 255 167 2 chr12 77421348 77421554 -43835976 - Lx7 LINE L1 -1773 5923 5659 1 1175 400 218 105 38 chr12 77421890 77421995 -43835535 - B3A SINE B2 -85 113 2 1 1175 312 275 88 0 chr12 77423557 77423648 -43833882 - PB1D10 SINE Alu -18 99 1 1 1175 720 228 0 7 chr12 77423901 77424038 -43833492 - ID_B1 SINE B4 -3 221 86 1 1175 225 0 0 0 chr12 77424055 77424080 -43833450 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1175 385 237 158 17 chr12 77424086 77424206 -43833324 - B3A SINE B2 -34 164 28 1 1175 414 243 55 36 chr12 77424203 77424339 -43833191 - B3 SINE B2 -5 188 49 1 1175 376 242 39 48 chr12 77425060 77425155 -43832375 + B1_Mur4 SINE Alu 43 137 -13 1 1175 994 142 0 0 chr12 77425155 77425303 -43832227 + B1_Mur4 SINE Alu 2 149 -1 1 1175 558 211 17 17 chr12 77425381 77425497 -43832033 - B3A SINE B2 -76 122 7 1 1175 238 254 59 15 chr12 77427191 77427259 -43830271 - tRNA-Val-GTA tRNA tRNA 0 76 6 1 1175 347 232 90 48 chr12 77427248 77427393 -43830137 + YREP_Mm Unknown Unknown 144 294 -1518 1 1175 548 208 39 23 chr12 77427279 77427407 -43830123 - ID_B1 SINE B4 -5 219 90 1 1175 361 313 142 40 chr12 77427456 77427682 -43829848 + MIRb SINE MIR 12 260 -8 1 1175 1092 97 0 0 chr12 77428349 77428494 -43829036 + B1_Mus1 SINE Alu 3 147 -1 1 1175 994 134 0 26 chr12 77431757 77431910 -43825620 - B1_Mur4 SINE Alu -1 149 1 1 1175 1075 103 0 7 chr12 77432246 77432392 -43825138 - B1_Mus1 SINE Alu -2 146 2 1 1175 393 22 0 0 chr12 77433058 77433104 -43824426 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1175 180 0 0 0 chr12 77433373 77433393 -43824137 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1175 21 0 0 0 chr12 77434149 77434170 -43823360 + AT_rich Low_complexity Low_complexity 1 21 0 1 1175 796 65 0 0 chr12 77434372 77434479 -43823051 - BC1_Mm scRNA scRNA -45 107 1 1 1175 378 0 0 0 chr12 77434732 77434774 -43822756 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1175 228 35 0 0 chr12 77435462 77435491 -43822039 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1 1175 720 146 9 0 chr12 77435541 77435651 -43821879 - B1_Mur3 SINE Alu 0 149 39 1 1175 343 253 21 42 chr12 77435849 77435944 -43821586 - PB1D10 SINE Alu -23 94 2 1 1175 754 209 7 7 chr12 77436231 77436380 -43821150 - B1_Mur2 SINE Alu 0 149 1 1 1175 1303 106 21 0 chr12 77436380 77436567 -43820963 - B2_Mm2 SINE B2 -3 192 1 1 1175 316 200 84 65 chr12 77436601 77436708 -43820822 - PB1D9 SINE Alu 0 120 12 1 1175 940 179 48 26 chr12 77438067 77438256 -43819274 - B3 SINE B2 0 216 24 1 1175 853 93 8 0 chr12 77438249 77438367 -43819163 + B1_Mus2 SINE Alu 29 147 0 1 1175 411 107 0 0 chr12 77438367 77438442 -43819088 + (A)n Simple_repeat Simple_repeat 1 75 0 1 1175 590 229 33 59 chr12 77438468 77438621 -43818909 - ID_B1 SINE B4 -74 150 2 1 1175 1056 282 29 16 chr12 77438665 77438971 -43818559 - MTE2b LTR MaLR -64 315 6 1 1175 531 172 76 25 chr12 77438958 77439077 -43818453 + B1_Mur3 SINE Alu 25 149 0 1 1175 1183 62 0 14 chr12 77439097 77439245 -43818285 + B1_Mus2 SINE Alu 2 147 0 1 1175 267 31 0 0 chr12 77439245 77439277 -43818253 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1175 218 243 0 0 chr12 77439747 77439784 -43817746 + ID SINE ID 45 81 -143 1 1175 186 118 0 0 chr12 77439790 77439824 -43817706 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1175 186 43 0 0 chr12 77439921 77439944 -43817586 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1175 364 251 204 32 chr12 77440733 77441084 -43816446 - L1_Mur3 LINE L1 -307 5540 5134 1 1175 781 176 7 0 chr12 77441128 77441264 -43816266 - B1_Mus2 SINE Alu -8 139 3 1 1175 508 239 205 11 chr12 77441323 77441575 -43815955 + L1MA7 LINE L1 5623 5922 -234 1 1175 737 174 27 34 chr12 77441616 77441765 -43815765 + B1_Mur2 SINE Alu 1 148 -1 1 1175 325 345 45 62 chr12 77442958 77443134 -43814396 - MER20 DNA MER1_type -9 210 38 1 1175 250 242 65 0 chr12 77443214 77443276 -43814254 - ID4_ SINE ID -17 66 1 1 1175 252 291 86 52 chr12 77443306 77443422 -43814108 - PB1D7 SINE Alu 0 120 1 1 1175 367 346 106 18 chr12 77443522 77443740 -43813790 + MLT2B4 LTR ERVL 243 479 -77 1 1175 486 287 7 34 chr12 77443755 77443903 -43813627 - B1F2 SINE Alu 0 149 6 1 1175 1157 61 7 26 chr12 77444188 77444339 -43813191 + B1_Mus1 SINE Alu 1 148 0 1 1175 747 266 39 5 chr12 77444361 77444565 -43812965 + B3 SINE B2 3 213 -3 1 1175 225 0 0 0 chr12 77444892 77444917 -43812613 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1175 1229 54 0 0 chr12 77444917 77445064 -43812466 - B1_Mus2 SINE Alu 0 147 1 1 1175 611 283 29 0 chr12 77445090 77445263 -43812267 - B3A SINE B2 -16 182 5 1 1175 324 0 0 0 chr12 77445431 77445467 -43812063 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1175 1700 16 0 20 chr12 77446019 77446216 -43811314 + B2_Mm1a SINE B2 1 193 0 1 1175 291 145 0 46 chr12 77446744 77446809 -43810721 + 4.5SRNA scRNA scRNA 25 86 -8 1 1175 735 39 29 0 chr12 77446761 77446864 -43810666 + B1_Mus2 SINE Alu 42 147 0 1 1175 357 136 0 0 chr12 77447020 77447086 -43810444 + (GGGGA)n Simple_repeat Simple_repeat 1 66 0 1 1175 388 162 25 12 chr12 77447321 77447402 -43810128 + B3A SINE B2 2 83 -115 1 1175 277 209 23 87 chr12 77447839 77447943 -43809587 + PB1D10 SINE Alu 21 120 0 1 1175 640 187 97 0 chr12 77447990 77448124 -43809406 - B1F2 SINE Alu 0 149 3 1 1175 180 0 0 0 chr12 77448194 77448214 -43809316 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1175 1135 69 7 0 chr12 77448214 77448358 -43809172 - B1_Mus2 SINE Alu 0 147 3 1 1175 255 310 56 33 chr12 77448517 77448607 -43808923 + PB1 SINE Alu 17 108 -19 1 1175 666 130 0 0 chr12 77449456 77449564 -43807966 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 1175 346 250 0 0 chr12 77449690 77449762 -43807768 - ID4_ SINE ID -11 72 1 1 1175 413 282 13 0 chr12 77451588 77451714 -43805816 + L1M3 LINE L1 5638 5766 -417 1 1175 926 141 7 0 chr12 77451714 77451856 -43805674 + B1_Mur2 SINE Alu 1 143 -6 1 1175 356 266 18 35 chr12 77451856 77451869 -43805661 + L1M3 LINE L1 5767 5776 -413 1 1175 222 118 0 0 chr12 77452000 77452034 -43805496 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1175 1094 197 10 0 chr12 77452208 77452406 -43805124 + B3 SINE B2 2 201 -15 1 1175 500 176 22 0 chr12 77452491 77452582 -43804948 + B3A SINE B2 1 93 -105 1 1175 203 235 24 12 chr12 77452593 77452675 -43804855 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 1 1175 4109 90 22 5 chr12 77453133 77453734 -43803796 - L1_Mus3 LINE L1 -10 6628 6018 1 1175 2146 71 24 55 chr12 77453979 77454243 -43803287 + ORR1A2 LTR MaLR 1 269 -58 1 1175 1224 48 0 0 chr12 77454243 77454388 -43803142 + B1_Mus1 SINE Alu 3 147 -1 1 1175 2146 71 24 55 chr12 77454388 77454452 -43803078 + ORR1A2 LTR MaLR 270 319 -8 1 1175 566 259 42 7 chr12 77454471 77454615 -43802915 - B1F SINE Alu 0 149 1 1 1175 216 315 45 9 chr12 77454892 77455004 -43802526 - MIR SINE MIR -25 237 122 1 1175 189 0 0 0 chr12 77455529 77455550 -43801980 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1175 537 244 29 7 chr12 77455696 77455832 -43801698 + B1F SINE Alu 3 141 -8 1 1175 261 0 0 0 chr12 77455835 77455864 -43801666 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 1175 336 48 0 0 chr12 77455865 77455907 -43801623 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 1 1175 698 234 14 0 chr12 77456299 77456440 -43801090 - B1_Mur1 SINE Alu -6 143 1 1 1175 24 0 0 0 chr12 77456538 77456562 -43800968 + AT_rich Low_complexity Low_complexity 1 24 0 1 1175 1468 102 28 5 chr12 77456598 77456815 -43800715 + URR1A DNA MER1_type 5 226 0 1 1175 21 36 0 0 chr12 77456824 77456852 -43800678 + AT_rich Low_complexity Low_complexity 1 28 0 1 1175 238 111 36 36 chr12 77457102 77457158 -43800372 + (CATA)n Simple_repeat Simple_repeat 3 58 0 1 1175 414 0 0 0 chr12 77457374 77457420 -43800110 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1175 210 265 0 0 chr12 77457473 77457522 -43800008 - ID4_ SINE ID -29 54 6 1 1175 243 88 0 0 chr12 77457547 77457581 -43799949 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1175 895 72 136 0 chr12 77457584 77457709 -43799821 - B1_Mus1 SINE Alu -6 142 1 1 1175 234 81 0 0 chr12 77457716 77457753 -43799777 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1175 1198 36 0 0 chr12 77457753 77457891 -43799639 - B1_Mus2 SINE Alu -9 138 1 1 1175 1955 127 112 3 chr12 77458505 77458853 -43798677 + ORR1B1 LTR MaLR 1 386 -8 1 1175 1245 82 60 6 chr12 77459085 77459268 -43798262 - B2_Mm2 SINE B2 -2 193 1 1 1175 242 212 152 0 chr12 77459348 77459414 -43798116 - MIRb SINE MIR -166 102 27 1 1175 1106 112 46 17 chr12 77459948 77460121 -43797409 + B2_Mm1t SINE B2 2 179 -14 1 1175 324 110 337 9 chr12 77460133 77460242 -43797288 + B2_Mm2 SINE B2 46 195 0 1 1175 1323 105 26 0 chr12 77460387 77460577 -43796953 - B2_Mm2 SINE B2 0 195 1 1 1175 1640 37 5 0 chr12 77460586 77460777 -43796753 - B2_Mm1t SINE B2 -1 192 1 1 1175 1247 41 0 0 chr12 77460900 77461047 -43796483 + B1_Mus2 SINE Alu 1 147 0 1 1175 180 0 0 0 chr12 77461047 77461067 -43796463 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1175 482 311 6 36 chr12 77461275 77461442 -43796088 - RSINE1 SINE B4 -1 164 3 1 1175 487 289 43 31 chr12 77461464 77461625 -43795905 - RSINE1 SINE B4 0 165 3 1 1175 885 62 148 0 chr12 77461653 77461781 -43795749 + B1_Mus1 SINE Alu 2 148 0 1 1175 213 65 0 0 chr12 77461790 77461821 -43795709 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1175 1308 81 48 5 chr12 77461902 77462088 -43795442 + B2_Mm2 SINE B2 2 195 0 1 1175 182 258 236 24 chr12 77462953 77463076 -43794454 + MIRc SINE MIR 6 154 -114 1 1175 326 151 6 0 chr12 77463104 77463169 -43794361 + PB1D10 SINE Alu 33 100 -49 1 1176 24 32 0 0 chr12 77463880 77463911 -43793619 + AT_rich Low_complexity Low_complexity 1 31 0 1 1176 256 273 15 0 chr12 77463911 77463977 -43793553 + tRNA-Ala-GCY_ tRNA tRNA 3 69 -6 1 1176 273 297 0 0 chr12 77463921 77463985 -43793545 + ID4_ SINE ID 20 83 0 1 1176 1203 61 0 0 chr12 77464523 77464670 -43792860 - B1_Mus1 SINE Alu 0 148 2 1 1176 988 200 40 10 chr12 77465027 77465229 -43792301 + B3 SINE B2 1 208 -8 1 1176 232 193 133 22 chr12 77465246 77465336 -43792194 - L1MEb LINE L1 -5477 593 494 1 1176 252 140 17 17 chr12 77465597 77465655 -43791875 + B3 SINE B2 155 212 -4 1 1176 446 273 71 14 chr12 77465667 77465808 -43791722 + B1F SINE Alu 1 149 0 1 1176 266 194 75 0 chr12 77465966 77466033 -43791497 - Lx8 LINE L1 -1 7472 7401 1 1176 451 326 44 0 chr12 77466510 77466645 -43790885 - B1F1 SINE Alu -7 142 2 1 1176 306 167 333 53 chr12 77466919 77467033 -43790497 + B4A SINE B4 144 289 -3 1 1176 224 279 0 68 chr12 77467830 77467903 -43789627 + ID4 SINE ID 3 70 -13 1 1176 687 137 168 17 chr12 77468012 77468131 -43789399 - B1_Mur2 SINE Alu -11 138 2 1 1176 453 307 65 18 chr12 77468148 77468317 -43789213 - B3 SINE B2 -30 186 10 1 1176 258 228 139 0 chr12 77469566 77469667 -43787863 + MIR3 SINE MIR 92 206 -2 1 1176 258 125 0 0 chr12 77470608 77470656 -43786874 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 1 1176 239 26 0 73 chr12 77470814 77470855 -43786675 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1176 25 0 0 0 chr12 77471300 77471325 -43786205 + GC_rich Low_complexity Low_complexity 1 25 0 1 1176 334 247 33 22 chr12 77472726 77472817 -43784713 - PB1D10 SINE Alu -8 109 18 1 1176 470 202 81 63 chr12 77473293 77473404 -43784126 + PB1D10 SINE Alu 5 117 0 1 1176 601 254 66 77 chr12 77473408 77473604 -43783926 + B3A SINE B2 2 195 -3 1 1176 750 190 0 7 chr12 77473792 77473930 -43783600 - B1_Mus2 SINE Alu 0 147 11 1 1176 366 309 63 0 chr12 77473826 77473952 -43783578 - B4 SINE B4 -87 205 72 1 1176 189 0 0 0 chr12 77473953 77473974 -43783556 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1 1176 282 280 18 36 chr12 77473975 77474086 -43783444 - PB1D10 SINE Alu -7 110 2 1 1176 441 235 8 16 chr12 77474104 77474225 -43783305 - PB1D9 SINE Alu 0 120 1 1 1176 221 156 0 43 chr12 77474387 77474405 -43783125 + T-rich Low_complexity Low_complexity 28 45 0 1 1176 1737 16 0 0 chr12 77474405 77474597 -43782933 - B2_Mm1a SINE B2 0 193 2 1 1176 221 156 0 43 chr12 77474597 77474625 -43782905 + T-rich Low_complexity Low_complexity 1 27 0 1 1176 227 247 45 34 chr12 77474932 77475020 -43782510 - HAL1b LINE L1 -22 1987 1899 1 1176 468 0 0 0 chr12 77475469 77475521 -43782009 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1176 547 198 0 10 chr12 77475830 77475932 -43781598 - PB1D9 SINE Alu -10 110 10 1 1176 300 266 10 60 chr12 77475858 77475958 -43781572 - B4 SINE B4 -124 168 74 1 1176 283 306 0 0 chr12 77476027 77476099 -43781431 + ID4_ SINE ID 8 79 -4 1 1176 1171 89 26 53 chr12 77476124 77476314 -43781216 + B2_Mm2 SINE B2 2 186 -9 1 1176 637 197 87 7 chr12 77476324 77476462 -43781068 + B1_Mur2 SINE Alu 1 149 0 1 1176 21 36 0 0 chr12 77476462 77476490 -43781040 + AT_rich Low_complexity Low_complexity 1 28 0 1 1176 381 184 120 20 chr12 77477436 77477536 -43779994 + PB1D9 SINE Alu 5 114 -6 1 1176 774 163 186 16 chr12 77478449 77478482 -43779048 + URR1A DNA MER1_type 1 31 -195 1 1176 189 74 0 0 chr12 77478482 77478509 -43779021 + (CTGGGG)n Simple_repeat Simple_repeat 3 29 0 1 1176 774 163 186 16 chr12 77478509 77478668 -43778862 + URR1A DNA MER1_type 32 226 0 1 1176 526 247 48 7 chr12 77479146 77479293 -43778237 + Tigger16a DNA Tigger 780 932 -1 1 1176 849 226 18 44 chr12 77479630 77479857 -43777673 + ID_B1 SINE B4 4 224 0 1 1176 1098 71 123 12 chr12 77480461 77480632 -43776898 + B2_Mm2 SINE B2 5 194 -1 1 1176 452 169 63 71 chr12 77480684 77480811 -43776719 - B1F2 SINE Alu -1 148 23 1 1176 972 201 24 14 chr12 77480841 77481048 -43776482 - B3 SINE B2 0 216 8 1 1176 451 215 55 18 chr12 77481176 77481285 -43776245 - B1F2 SINE Alu -36 113 1 1 1176 1517 48 11 0 chr12 77482232 77482418 -43775112 - B2_Mm2 SINE B2 -7 188 1 1 1176 698 247 55 5 chr12 77482513 77482712 -43774818 - B3 SINE B2 -4 212 4 1 1176 693 149 0 17 chr12 77483135 77483271 -43774259 + B1_Mur3 SINE Alu 17 149 0 1 1176 1049 127 60 22 chr12 77483328 77483513 -43774017 - B2_Mm2 SINE B2 -1 194 3 1 1176 198 71 0 0 chr12 77483874 77483902 -43773628 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1176 711 200 198 11 chr12 77483904 77484081 -43773449 - B3 SINE B2 -4 212 3 1 1176 1119 69 0 27 chr12 77484090 77484239 -43773291 - B1_Mm SINE Alu -2 145 1 1 1176 289 143 211 14 chr12 77484417 77484488 -43773042 - PB1D9 SINE Alu -6 114 30 1 1176 1002 220 24 0 chr12 77484549 77484758 -43772772 - B3 SINE B2 0 216 3 1 1176 337 214 68 21 chr12 77484957 77485071 -43772459 + B1F SINE Alu 11 131 -18 1 1176 574 239 70 6 chr12 77485078 77485234 -43772296 + B3A SINE B2 1 166 -32 1 1176 622 208 33 7 chr12 77485569 77485719 -43771811 - B4 SINE B4 0 292 139 1 1176 692 158 14 50 chr12 77485783 77485923 -43771607 - B1_Mur1 SINE Alu -12 137 3 1 1176 23 0 0 0 chr12 77485996 77486019 -43771511 + AT_rich Low_complexity Low_complexity 1 23 0 1 1176 23 54 0 0 chr12 77488774 77488811 -43768719 + AT_rich Low_complexity Low_complexity 1 37 0 1 1176 27 0 0 0 chr12 77489232 77489259 -43768271 + AT_rich Low_complexity Low_complexity 1 27 0 1 1176 1531 62 5 0 chr12 77490368 77490560 -43766970 - B2_Mm1a SINE B2 0 193 1 1 1176 309 245 50 83 chr12 77491574 77491694 -43765836 - PB1D10 SINE Alu -1 116 1 1 1176 228 304 0 80 chr12 77491854 77491929 -43765601 + PB1D7 SINE Alu 9 77 -43 1 1176 324 179 345 0 chr12 77492039 77492123 -43765407 + PB1D10 SINE Alu 2 114 -3 1 1176 1000 64 0 21 chr12 77492453 77492596 -43764934 + B1_Mus2 SINE Alu 8 147 0 1 1176 350 314 19 0 chr12 77492690 77492795 -43764735 + PB1D10 SINE Alu 1 107 -10 1 1176 215 178 44 0 chr12 77492868 77492913 -43764617 + GA-rich Low_complexity Low_complexity 3 49 0 1 1176 238 321 107 41 chr12 77493214 77493383 -43764147 - MIRb SINE MIR -42 226 47 1 1176 368 78 69 0 chr12 77494838 77494904 -43762626 + B1_Mur2 SINE Alu 55 126 -23 1 1176 827 46 9 0 chr12 77494909 77495017 -43762513 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 1176 393 174 95 32 chr12 77495157 77495252 -43762278 - PB1D10 SINE Alu -1 116 16 1 1176 825 182 0 0 chr12 77497067 77497204 -43760326 + B1_Mur1 SINE Alu 7 143 -6 1 1176 577 237 43 22 chr12 77497376 77497514 -43760016 + ID_B1 SINE B4 84 224 0 1 1176 198 91 0 0 chr12 77498116 77498149 -43759381 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1176 200 111 111 0 chr12 77498636 77498681 -43758849 + (GTTTG)n Simple_repeat Simple_repeat 5 54 0 1 1176 546 182 45 0 chr12 77498683 77498793 -43758737 - PB1D7 SINE Alu 0 120 6 1 1176 453 292 74 27 chr12 77498898 77499046 -43758484 + RSINE1 SINE B4 3 157 -8 1 1176 230 296 0 129 chr12 77499584 77499677 -43757853 + ID4_ SINE ID 2 82 -1 1 1176 969 214 34 17 chr12 77500002 77500178 -43757352 + ID_B1 SINE B4 43 221 -3 1 1176 325 312 20 41 chr12 77500061 77500208 -43757322 - YREP_Mm Unknown Unknown -1519 293 150 2 1176 273 274 0 152 chr12 77500291 77500354 -43757176 + B3A SINE B2 1 62 -136 3 1176 831 164 7 7 chr12 77500354 77500477 -43757053 + B1_Mus1 SINE Alu 2 125 -23 4 1176 207 0 0 0 chr12 77500477 77500500 -43757030 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1176 831 164 7 7 chr12 77500500 77500511 -43757019 + B1_Mus1 SINE Alu 126 136 -12 4 1176 207 0 0 0 chr12 77500511 77500534 -43756996 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1176 273 274 0 152 chr12 77500534 77500607 -43756923 + B3A SINE B2 63 116 -82 3 1176 728 241 5 71 chr12 77500892 77501102 -43756428 + B3A SINE B2 2 197 -1 7 1176 766 49 0 29 chr12 77501104 77501209 -43756321 + BC1_Mm scRNA scRNA 1 102 -50 8 1176 1132 76 7 0 chr12 77501209 77501354 -43756176 + B1_Mus1 SINE Alu 1 146 -2 9 1176 194 0 0 37 chr12 77501354 77501381 -43756149 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 1176 1412 75 21 0 chr12 77501443 77501629 -43755901 + B2_Mm2 SINE B2 2 191 -4 1 1176 801 182 0 8 chr12 77501639 77501780 -43755750 + B1_Mur2 SINE Alu 1 134 -15 1 1176 379 217 9 9 chr12 77501825 77501932 -43755598 + (TA)n Simple_repeat Simple_repeat 1 107 0 1 1176 254 229 114 57 chr12 77502289 77502377 -43755153 - B1F SINE Alu -52 97 5 1 1176 807 199 46 72 chr12 77502803 77502998 -43754532 - B3 SINE B2 -25 191 2 1 1176 31 26 0 0 chr12 77503022 77503060 -43754470 + AT_rich Low_complexity Low_complexity 1 38 0 1 1176 667 266 30 45 chr12 77503103 77503121 -43754409 - B3A SINE B2 0 198 182 1 1176 189 0 0 0 chr12 77503121 77503142 -43754388 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1 1176 667 266 30 45 chr12 77503142 77503324 -43754206 - B3A SINE B2 -17 181 1 1 1176 636 253 102 0 chr12 77503559 77503725 -43753805 + B3A SINE B2 2 184 -14 1 1176 21 0 0 0 chr12 77504973 77504994 -43752536 + GC_rich Low_complexity Low_complexity 1 21 0 2 1176 274 159 29 0 chr12 77507447 77507516 -43750014 + T-rich Low_complexity Low_complexity 2 72 0 2 1176 377 240 80 0 chr12 77508581 77508681 -43748849 - RSINE1 SINE B4 -46 119 12 2 1176 193 77 123 0 chr12 77508699 77508749 -43748781 + (GTTTG)n Simple_repeat Simple_repeat 5 59 0 2 1176 662 157 59 79 chr12 77508749 77508901 -43748629 - B1_Mur4 SINE Alu -1 149 1 2 1176 193 77 123 0 chr12 77508901 77508915 -43748615 + (GTTTG)n Simple_repeat Simple_repeat 4 19 0 2 1176 208 68 22 43 chr12 77508921 77508951 -43748579 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 2 1176 1095 104 104 0 chr12 77508951 77509124 -43748406 - B2_Mm1t SINE B2 -2 191 1 2 1176 208 68 22 43 chr12 77509124 77509139 -43748391 + (TTTTTG)n Simple_repeat Simple_repeat 3 18 0 2 1176 227 250 111 30 chr12 77509673 77509772 -43747758 - ID_B1 SINE B4 -4 220 114 2 1176 236 265 36 117 chr12 77509817 77509928 -43747602 - ID_B1 SINE B4 -10 214 113 3 1176 525 177 29 59 chr12 77510002 77510104 -43747426 - B1_Mur4 SINE Alu -30 120 22 3 1176 257 319 103 26 chr12 77510016 77510132 -43747398 - B4A SINE B4 -98 194 70 3 1176 1466 58 5 21 chr12 77511020 77511213 -43746317 + B2_Mm1a SINE B2 1 190 -3 3 1176 938 231 5 10 chr12 77511324 77511521 -43746009 - B3 SINE B2 -18 198 3 3 1176 467 262 99 0 chr12 77511553 77511694 -43745836 - RSINE1 SINE B4 -6 159 5 3 1176 634 127 173 8 chr12 77511789 77511916 -43745614 - B1_Mus1 SINE Alu 0 148 1 3 1176 1163 112 0 0 chr12 77511944 77512105 -43745425 - B2_Mm2 SINE B2 -24 171 11 3 1176 1247 48 0 0 chr12 77512117 77512264 -43745266 + B1_Mus2 SINE Alu 1 147 0 3 1176 858 150 28 7 chr12 77512605 77512746 -43744784 + B1_Mur4 SINE Alu 6 149 -1 3 1176 354 254 160 101 chr12 77512609 77512770 -43744760 + B4 SINE B4 94 266 -26 4 1176 773 176 63 105 chr12 77512770 77512960 -43744570 + B3A SINE B2 1 182 -16 4 1176 354 254 160 101 chr12 77512960 77512986 -43744544 + B4 SINE B4 267 292 0 4 1176 1380 65 43 11 chr12 77513021 77513209 -43744321 + B2_Mm2 SINE B2 2 195 0 4 1176 1139 44 15 0 chr12 77513213 77513349 -43744181 + B1_Mus1 SINE Alu 2 139 -9 4 1176 1191 61 0 13 chr12 77513389 77513538 -43743992 + B1_Mus1 SINE Alu 2 148 0 4 1176 858 150 28 7 chr12 77513877 77514018 -43743512 + B1_Mur4 SINE Alu 6 149 -1 4 1176 362 249 160 101 chr12 77513881 77514042 -43743488 + B4 SINE B4 94 266 -26 4 1176 773 176 63 105 chr12 77514042 77514232 -43743298 + B3A SINE B2 1 182 -16 4 1176 362 249 160 101 chr12 77514232 77514258 -43743272 + B4 SINE B4 267 292 0 4 1176 1380 65 43 11 chr12 77514293 77514481 -43743049 + B2_Mm2 SINE B2 2 195 0 4 1176 1139 44 15 0 chr12 77514485 77514621 -43742909 + B1_Mus1 SINE Alu 2 139 -9 4 1176 1115 95 0 13 chr12 77514661 77514810 -43742720 + B1_Mus1 SINE Alu 2 148 0 5 1176 406 286 18 10 chr12 77515139 77515275 -43742255 - PB1D10 SINE Alu -3 146 8 5 1176 246 211 28 128 chr12 77515187 77515296 -43742234 - MT2B2 LTR ERVL -333 251 154 5 1176 923 161 14 0 chr12 77515366 77515509 -43742021 - B1_Mur2 SINE Alu 0 149 5 5 1176 195 42 0 0 chr12 77515597 77515621 -43741909 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 5 1176 1143 62 7 7 chr12 77515631 77515777 -43741753 - B1_Mm SINE Alu 0 147 2 5 1176 459 288 35 35 chr12 77515800 77515944 -43741586 - B3 SINE B2 -7 209 66 5 1176 805 110 0 0 chr12 77515941 77516050 -43741480 + B2_Mm2 SINE B2 7 115 -80 5 1176 1061 61 0 0 chr12 77516075 77516206 -43741324 + B1_Mus2 SINE Alu 4 134 -13 5 1176 186 71 0 0 chr12 77516206 77516234 -43741296 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1176 261 291 88 12 chr12 77516234 77516314 -43741216 - B3 SINE B2 -130 86 1 5 1176 1716 31 0 0 chr12 77516348 77516541 -43740989 - B2_Mm1t SINE B2 0 193 1 6 1176 307 170 0 0 chr12 77516735 77516788 -43740742 - B4A SINE B4 -161 131 79 6 1176 824 101 0 25 chr12 77517598 77517714 -43739816 + MTC LTR MaLR 1 114 -307 6 1176 639 0 0 0 chr12 77517714 77517785 -43739745 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 6 1176 288 0 0 0 chr12 77517790 77517822 -43739708 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 1176 1070 89 0 0 chr12 77517823 77517958 -43739572 - B1_Mus1 SINE Alu -13 135 1 6 1176 470 100 20 82 chr12 77517958 77518056 -43739474 + MTC LTR MaLR 111 202 -219 6 1176 797 134 34 27 chr12 77518056 77518202 -43739328 - B1_Mur4 SINE Alu -1 149 3 6 1176 23 0 0 0 chr12 77518440 77518463 -43739067 + GC_rich Low_complexity Low_complexity 1 23 0 6 1176 267 103 0 0 chr12 77519149 77519188 -43738342 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 6 1176 209 225 74 12 chr12 77519274 77519355 -43738175 + CT-rich Low_complexity Low_complexity 3 88 0 6 1176 1098 193 15 15 chr12 77519424 77519629 -43737901 + B3 SINE B2 6 210 -6 7 1176 593 272 12 37 chr12 77519632 77519796 -43737734 + ID_B1 SINE B4 3 162 -62 7 1176 843 93 0 0 chr12 77520355 77520495 -43737035 + (TTTTC)n Simple_repeat Simple_repeat 3 142 0 7 1176 1080 88 0 0 chr12 77520496 77520632 -43736898 - B1_Mus1 SINE Alu -11 137 2 7 1176 3905 76 69 0 chr12 77520857 77521409 -43736121 - Lx3_Mus LINE L1 -8 7001 6412 7 1176 563 30 0 0 chr12 77521410 77521477 -43736053 - U6 snRNA snRNA -40 67 1 7 1176 355 262 24 0 chr12 77521507 77521591 -43735939 + ID_B1 SINE B4 131 216 -8 7 1176 1134 84 0 7 chr12 77521629 77521767 -43735763 + B1_Mus2 SINE Alu 1 138 -9 7 1176 432 0 0 0 chr12 77521767 77521815 -43735715 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 7 1176 229 245 0 19 chr12 77522232 77522286 -43735244 - ID4 SINE ID -20 63 11 7 1176 975 18 0 0 chr12 77522574 77522687 -43734843 + (TTCTCC)n Simple_repeat Simple_repeat 5 117 0 7 1176 1291 27 0 0 chr12 77522709 77522855 -43734675 + B1_Mm SINE Alu 2 147 0 8 1176 1303 92 17 0 chr12 77522872 77523046 -43734484 - B2_Mm2 SINE B2 -14 181 5 8 1176 717 12 0 0 chr12 77523046 77523128 -43734402 + (TTTTC)n Simple_repeat Simple_repeat 1 82 0 8 1176 1063 84 24 0 chr12 77523128 77523295 -43734235 + (TTCTCC)n Simple_repeat Simple_repeat 3 173 0 8 1176 237 65 0 0 chr12 77523332 77523363 -43734167 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1176 978 136 20 0 chr12 77523363 77523510 -43734020 - B1_Mur4 SINE Alu 0 150 1 8 1176 647 333 0 0 chr12 77523831 77523906 -43733624 + ID SINE ID 9 83 -141 8 1176 290 348 0 34 chr12 77523906 77524025 -43733505 + PB1D10 SINE Alu 3 117 0 8 1176 283 281 64 123 chr12 77524044 77524058 -43733472 - YREP_Mm Unknown Unknown -1502 310 274 8 1176 536 236 0 158 chr12 77524058 77524204 -43733326 + ID_B1 SINE B4 100 222 -2 8 1176 283 281 64 123 chr12 77524204 77524263 -43733267 - YREP_Mm Unknown Unknown -1502 273 105 8 1176 339 291 45 51 chr12 77524265 77524421 -43733109 + L1MA5 LINE L1 6141 6295 -5 9 1176 1099 34 6 82 chr12 77524431 77524589 -43732941 + B1_Mm SINE Alu 2 147 0 9 1176 464 241 150 0 chr12 77524612 77524745 -43732785 + B4 SINE B4 2 154 -138 9 1176 285 277 11 46 chr12 77524773 77524860 -43732670 + RSINE1 SINE B4 82 165 0 9 1176 1389 60 66 0 chr12 77524960 77525142 -43732388 + B2_Mm2 SINE B2 2 195 0 9 1176 350 279 35 26 chr12 77525239 77525353 -43732177 + L1ME2 LINE L1 6008 6122 -42 9 1176 182 37 37 0 chr12 77525457 77525484 -43732046 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 9 1176 1380 89 16 21 chr12 77525834 77526028 -43731502 - B2_Mm2 SINE B2 -1 194 2 9 1176 960 122 0 28 chr12 77526038 77526182 -43731348 - B1_Mus2 SINE Alu -7 140 1 9 1176 1304 159 24 9 chr12 77526203 77526413 -43731117 - B3 SINE B2 -1 215 3 9 1176 203 273 36 0 chr12 77526776 77526831 -43730699 + L2a LINE L2 3358 3414 -12 1 1176 699 12 0 0 chr12 77527098 77527178 -43730352 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1176 244 269 200 9 chr12 77527351 77527456 -43730074 + MIRb SINE MIR 128 252 -16 1 1176 543 122 0 0 chr12 77528049 77528139 -43729391 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 1 1176 219 250 20 20 chr12 77528139 77528182 -43729348 - ID4_ SINE ID -6 77 34 1 1176 601 171 25 41 chr12 77528214 77528336 -43729194 + PB1D9 SINE Alu 1 120 0 1 1176 305 322 50 17 chr12 77528367 77528487 -43729043 - B3 SINE B2 -4 212 89 1 1176 545 237 212 11 chr12 77528652 77528831 -43728699 + B3 SINE B2 2 216 0 1 1176 220 214 229 0 chr12 77529475 77529545 -43727985 - PB1D7 SINE Alu -30 90 5 1 1176 328 245 45 54 chr12 77529994 77530106 -43727424 - RLTR25B LTR ERVK -477 551 441 1 1176 899 42 75 0 chr12 77530016 77530136 -43727394 - B1_Mus1 SINE Alu -18 130 2 1 1176 244 232 0 35 chr12 77530237 77530295 -43727235 - MER33 DNA MER1_type 0 324 269 1 1176 952 129 0 7 chr12 77530318 77530459 -43727071 - B1_Mus1 SINE Alu -2 146 7 1 1176 423 192 14 130 chr12 77530351 77530489 -43727041 - MT2B LTR ERVL -337 264 143 1 1176 46 45 0 0 chr12 77530492 77530559 -43726971 + AT_rich Low_complexity Low_complexity 1 67 0 1 1176 22 0 0 0 chr12 77530584 77530606 -43726924 + AT_rich Low_complexity Low_complexity 1 22 0 1 1176 22 35 0 0 chr12 77530665 77530694 -43726836 + AT_rich Low_complexity Low_complexity 1 29 0 1 1176 305 274 39 10 chr12 77530706 77530809 -43726721 + (TATG)n Simple_repeat Simple_repeat 3 108 0 1 1176 932 279 27 60 chr12 77530831 77530895 -43726635 - B4A SINE B4 0 292 230 1 1176 210 37 0 0 chr12 77530901 77530928 -43726602 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1176 1152 50 0 7 chr12 77530928 77531063 -43726467 - B1_Mus2 SINE Alu -8 139 5 1 1176 932 279 27 60 chr12 77531063 77531299 -43726231 - B4A SINE B4 -63 229 2 1 1176 263 306 107 43 chr12 77531311 77531362 -43726168 - MER33 DNA MER1_type -175 149 92 1 1176 808 150 306 0 chr12 77531362 77531522 -43726008 - B3 SINE B2 -5 211 3 1 1176 263 306 107 43 chr12 77531522 77531610 -43725920 - MER33 DNA MER1_type -233 91 1 1 1176 219 146 0 0 chr12 77531612 77531653 -43725877 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1176 198 0 0 0 chr12 77531731 77531753 -43725777 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1176 766 193 0 22 chr12 77532723 77532861 -43724669 + B1_Mur2 SINE Alu 13 147 -2 1 1176 31 58 0 0 chr12 77532870 77532922 -43724608 + AT_rich Low_complexity Low_complexity 1 52 0 1 1176 512 288 23 0 chr12 77532946 77533078 -43724452 - ID_B1 SINE B4 -8 216 82 1 1176 302 209 43 75 chr12 77532995 77533088 -43724442 - MT2B2 LTR ERVL -342 242 153 1 1176 744 180 177 43 chr12 77533476 77533662 -43723868 + ID_B1 SINE B4 2 212 -12 1 1176 535 211 144 50 chr12 77533868 77534048 -43723482 - B3A SINE B2 0 198 2 1 1176 396 0 0 0 chr12 77534090 77534134 -43723396 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1176 415 209 174 0 chr12 77534135 77534221 -43723309 - RSINE1 SINE B4 -34 131 31 1 1176 288 77 0 0 chr12 77534435 77534474 -43723056 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1176 1013 116 7 0 chr12 77534474 77534614 -43722916 - B1_Mus1 SINE Alu -6 142 2 1 1176 180 0 0 0 chr12 77534621 77534641 -43722889 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1176 1160 63 0 0 chr12 77534645 77534788 -43722742 - B1_Mus1 SINE Alu -5 143 1 1 1176 781 199 7 0 chr12 77535108 77535249 -43722281 - B1_Mur4 SINE Alu -8 142 1 1 1176 483 238 7 71 chr12 77535124 77535264 -43722266 - ID_B1 SINE B4 -21 203 73 1 1176 692 211 168 0 chr12 77535854 77536039 -43721491 + B3 SINE B2 1 216 0 1 1176 2338 226 114 56 chr12 77536071 77536967 -43720563 - RMER17B LTR ERVK -10 948 1 1 1176 316 304 34 17 chr12 77539145 77539262 -43718268 - PB1D7 SINE Alu -1 119 1 1 1176 585 120 0 0 chr12 77539910 77540002 -43717528 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1176 261 196 78 0 chr12 77540556 77540607 -43716923 - B4 SINE B4 -4 288 234 1 1176 25 31 0 0 chr12 77540608 77540640 -43716890 + AT_rich Low_complexity Low_complexity 1 32 0 1 1176 1164 56 14 0 chr12 77540655 77540798 -43716732 - B1_Mm SINE Alu -2 145 1 1 1176 438 36 0 0 chr12 77540862 77540918 -43716612 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1176 301 233 167 64 chr12 77541051 77541129 -43716401 + RSINE1 SINE B4 80 165 0 1 1176 869 291 36 126 chr12 77541166 77541355 -43716175 + L1MC3 LINE L1 5655 5850 -1935 1 1176 882 157 0 64 chr12 77541355 77541512 -43716018 + B1_Mur3 SINE Alu 3 149 0 1 1176 869 291 36 126 chr12 77541512 77541983 -43715547 + L1MC3 LINE L1 5851 6256 -1529 1 1176 964 75 218 0 chr12 77542027 77542174 -43715356 + B2_Mm1t SINE B2 1 179 -14 1 1176 342 105 387 9 chr12 77542221 77542327 -43715203 + B2_Mm2 SINE B2 47 192 -3 1 1176 710 226 0 0 chr12 77542323 77542460 -43715070 + MTEb LTR MaLR 39 175 -204 1 1176 232 229 69 46 chr12 77542532 77542552 -43714978 + L1MC3 LINE L1 7148 7170 -791 1 1176 959 233 24 0 chr12 77542552 77542762 -43714768 - B3 SINE B2 -1 215 1 1 1176 232 229 69 46 chr12 77542762 77542828 -43714702 + L1MC3 LINE L1 7171 7236 -725 1 1176 908 123 101 19 chr12 77542828 77542986 -43714544 + B2_Mm1t SINE B2 1 171 -22 1 1176 2805 56 50 0 chr12 77543367 77543709 -43713821 - RLTR10D LTR ERVK 0 359 1 1 1176 365 270 51 17 chr12 77543841 77543958 -43713572 + URR1B DNA MER1_type 1 121 -104 1 1176 1176 131 16 137 chr12 77544171 77544427 -43713103 + URR1B DNA MER1_type 1 225 0 1 1176 256 332 204 43 chr12 77544590 77544690 -43712840 - L2 LINE L2 -514 2905 2797 1 1176 1045 100 22 193 chr12 77544690 77544913 -43712617 + B2_Mm1t SINE B2 2 186 -7 1 1176 256 332 204 43 chr12 77544913 77545420 -43712110 - L2 LINE L2 -623 2796 2200 1 1176 211 184 0 0 chr12 77545705 77545743 -43711787 + G-rich Low_complexity Low_complexity 5 42 0 1 1176 218 197 48 16 chr12 77545789 77545851 -43711679 + (TTGG)n Simple_repeat Simple_repeat 4 67 0 1 1176 900 199 0 52 chr12 77545987 77546132 -43711398 - B3 SINE B2 -14 202 67 1 1176 1810 169 31 41 chr12 77546132 77546546 -43710984 + RMER17C LTR ERVK 1 410 0 1 1176 900 199 0 52 chr12 77546546 77546612 -43710918 - B3 SINE B2 -150 66 3 1 1176 227 54 27 0 chr12 77546819 77546856 -43710674 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1176 1185 82 0 6 chr12 77546862 77547021 -43710509 - B2_Mm2 SINE B2 -37 158 1 1 1176 542 241 149 0 chr12 77547040 77547181 -43710349 - RSINE1 SINE B4 -2 163 2 1 1176 239 374 54 7 chr12 77547492 77547640 -43709890 + L4 LINE RTE 1692 1846 -183 1 1176 227 295 39 0 chr12 77547683 77547761 -43709769 - B1F1 SINE Alu -68 81 1 1 1176 441 246 62 55 chr12 77547761 77547839 -43709691 - B4 SINE B4 -205 87 9 1 1176 2239 168 66 2 chr12 77548014 77548409 -43709121 + MTC LTR MaLR 2 421 0 1 1176 189 333 20 10 chr12 77549740 77549840 -43707690 + MIR SINE MIR 84 184 -78 1 1176 572 146 160 16 chr12 77549889 77550014 -43707516 - B1_Mus2 SINE Alu 0 147 5 1 1176 596 254 6 70 chr12 77550234 77550398 -43707132 - RSINE1 SINE B4 -1 164 12 1 1176 1480 73 16 0 chr12 77550484 77550675 -43706855 - B2_Mm2 SINE B2 0 195 2 1 1176 263 268 0 58 chr12 77550776 77550863 -43706667 - B1F SINE Alu 0 149 68 1 1176 2304 117 6 0 chr12 77551231 77551556 -43705974 + ORR1A2 LTR MaLR 1 327 0 1 1176 743 291 16 21 chr12 77551832 77552018 -43705512 - B3 SINE B2 -31 185 1 1 1176 436 230 19 48 chr12 77552103 77552208 -43705322 - B4A SINE B4 -179 113 12 1 1176 800 130 68 40 chr12 77552387 77552563 -43704967 - B2_Mm2 SINE B2 -14 181 1 1 1176 1638 42 0 0 chr12 77553545 77553737 -43703793 + B2_Mm1a SINE B2 2 193 0 1 1176 245 27 54 0 chr12 77553792 77553829 -43703701 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1176 709 244 65 92 chr12 77553925 77554142 -43703388 + B4A SINE B4 2 212 -80 1 1176 701 152 76 42 chr12 77554259 77554403 -43703127 - B1_Mur1 SINE Alu 0 149 1 1 1176 338 261 119 113 chr12 77554270 77554421 -43703109 - B4 SINE B4 -74 218 67 1 1176 509 195 17 8 chr12 77555132 77555251 -43702279 + B1_Mur1 SINE Alu 29 148 -1 1 1176 332 221 14 14 chr12 77555403 77555472 -43702058 + B4A SINE B4 220 288 -4 1 1176 332 317 132 16 chr12 77555478 77555667 -43701863 + HAL1-3A_ME LINE L1 1985 2195 -663 1 1176 370 212 128 56 chr12 77555816 77555941 -43701589 + B1_Mur3 SINE Alu 3 136 -13 1 1176 293 0 0 26 chr12 77555941 77555979 -43701551 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 1 1176 225 0 0 0 chr12 77555983 77556008 -43701522 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 1 1176 346 68 0 0 chr12 77556089 77556133 -43701397 - RLTR42 LTR ERVK -192 47 4 1 1176 237 273 0 0 chr12 77556185 77556240 -43701290 - RSINE1 SINE B4 -99 66 12 1 1176 649 215 58 0 chr12 77556252 77556373 -43701157 - B1_Mur4 SINE Alu -21 129 2 1 1176 261 221 84 42 chr12 77556314 77556385 -43701145 - B4 SINE B4 -142 150 77 1 1176 409 260 124 16 chr12 77556384 77556513 -43701017 - B3 SINE B2 -4 212 70 1 1176 547 264 117 63 chr12 77556562 77556768 -43700762 - ID_B1 SINE B4 -1 223 7 1 1176 402 21 0 0 chr12 77557012 77557059 -43700471 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1176 2197 23 16 0 chr12 77557474 77557731 -43699799 - L1Md_F2 LINE L1 -9 6573 6313 1 1176 501 17 0 0 chr12 77558160 77558218 -43699312 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1176 246 268 40 40 chr12 77559143 77559217 -43698313 + LTR90A LTR LTR 841 914 -62 1 1176 216 0 0 0 chr12 77559689 77559713 -43697817 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1176 1208 57 0 0 chr12 77559715 77559856 -43697674 - B1_Mus2 SINE Alu -3 144 4 1 1176 3613 185 86 24 chr12 77560343 77560831 -43696699 + Lx5 LINE L1 6046 6553 -497 2 1176 3499 39 0 128 chr12 77560831 77561331 -43696199 + RLTR10C LTR ERVK 1 436 0 2 1176 3613 185 86 24 chr12 77561331 77561624 -43695906 + Lx5 LINE L1 6554 6875 -175 2 1176 272 280 38 46 chr12 77561623 77561754 -43695776 + L1MB1 LINE L1 5885 6014 -154 2 1176 240 59 0 0 chr12 77561764 77561798 -43695732 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1176 1177 70 0 0 chr12 77561800 77561943 -43695587 - B1_Mus2 SINE Alu -4 143 1 2 1176 411 172 29 114 chr12 77562087 77562192 -43695338 + B1F SINE Alu 54 149 0 2 1176 2121 147 16 62 chr12 77562211 77562550 -43694980 + ORR1B2 LTR MaLR 1 328 -39 2 1176 1270 94 44 0 chr12 77562550 77562731 -43694799 + B2_Mm1a SINE B2 3 191 -2 2 1176 2121 147 16 62 chr12 77562731 77562776 -43694754 + ORR1B2 LTR MaLR 329 367 0 2 1176 323 349 65 13 chr12 77562943 77563097 -43694433 + L1M4 LINE L1 4827 4988 -1158 2 1176 532 292 35 0 chr12 77563103 77563247 -43694283 - MTE2b LTR MaLR -2 377 229 2 1176 1231 260 77 6 chr12 77563261 77563598 -43693932 - MTE2b LTR MaLR -18 361 1 2 1176 422 261 28 133 chr12 77563608 77563789 -43693741 + L1M4 LINE L1 5004 5165 -981 2 1176 381 197 26 26 chr12 77563789 77563867 -43693663 + B1_Mm SINE Alu 68 145 -2 2 1176 699 247 12 54 chr12 77563976 77564143 -43693387 + RSINE1 SINE B4 6 165 0 2 1176 407 232 103 8 chr12 77564172 77564298 -43693232 + L1M4 LINE L1 5184 5321 -825 2 1176 239 269 75 0 chr12 77564309 77564376 -43693154 + ID4_ SINE ID 1 72 -11 2 1176 411 21 0 0 chr12 77564389 77564437 -43693093 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1176 225 94 0 0 chr12 77564701 77564733 -43692797 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1176 261 229 318 40 chr12 77564974 77565147 -43692383 - MIR SINE MIR -33 229 9 2 1176 1185 74 99 0 chr12 77565402 77565564 -43691966 + B2_Mm2 SINE B2 3 180 -15 2 1176 426 39 0 0 chr12 77565564 77565616 -43691914 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1176 273 222 0 0 chr12 77566080 77566134 -43691396 - Lx8 LINE L1 0 7473 7420 2 1176 867 240 99 0 chr12 77566313 77566505 -43691025 + B3 SINE B2 1 211 -5 2 1176 216 0 0 0 chr12 77566612 77566636 -43690894 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 2 1176 802 210 7 0 chr12 77566637 77566780 -43690750 - B1_Mur2 SINE Alu -3 146 3 2 1176 195 42 0 0 chr12 77566897 77566921 -43690609 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1176 1068 254 5 9 chr12 77566921 77567132 -43690398 - ID_B1 SINE B4 -13 211 2 2 1176 1100 97 103 0 chr12 77567225 77567390 -43690140 + B2_Mm2 SINE B2 3 184 -11 2 1176 1191 75 0 0 chr12 77567423 77567569 -43689961 + B1_Mus2 SINE Alu 2 147 0 2 1176 519 322 61 14 chr12 77568503 77568717 -43688813 - MER63D DNA AcHobo -692 369 146 2 1176 446 236 104 89 chr12 77568733 77568844 -43688686 + ID_B1 SINE B4 80 203 -21 2 1176 207 0 0 0 chr12 77568844 77568867 -43688663 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 1176 446 236 104 89 chr12 77568867 77568890 -43688640 + ID_B1 SINE B4 204 216 -8 2 1176 1110 118 0 0 chr12 77568894 77569064 -43688466 + (GAA)n Simple_repeat Simple_repeat 2 171 0 2 1176 270 188 62 0 chr12 77569094 77569158 -43688372 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 2 1176 244 114 0 0 chr12 77569411 77569446 -43688084 - MT2A LTR ERVL 0 533 499 2 1176 246 62 0 0 chr12 77569446 77569478 -43688052 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1176 1242 87 0 28 chr12 77569479 77569656 -43687874 - B2_Mm2 SINE B2 -22 173 2 2 1176 620 308 3430 55 chr12 77569663 77569687 -43687843 - MT2A LTR ERVL -72 461 453 2 1176 583 228 63 42 chr12 77569687 77569829 -43687701 + B1_Mur1 SINE Alu 2 146 -3 2 1176 620 332 27 0 chr12 77569829 77570006 -43687524 - MT2A LTR ERVL -81 452 271 2 1176 572 305 50 54 chr12 77570046 77570268 -43687262 - MLT1B LTR MaLR 0 390 170 2 1176 263 214 28 14 chr12 77571496 77571567 -43685963 + PB1D10 SINE Alu 40 111 -6 2 1176 1799 154 130 9 chr12 77571572 77571919 -43685611 + ORR1B1 LTR MaLR 6 394 0 2 1176 1215 48 0 7 chr12 77571997 77572145 -43685385 + B1_Mus1 SINE Alu 2 148 0 2 1176 657 157 0 0 chr12 77572145 77572260 -43685270 + GA-rich Low_complexity Low_complexity 6 120 0 2 1176 517 187 0 11 chr12 77572903 77572995 -43684535 + B1_Mur2 SINE Alu 50 140 -9 2 1176 394 209 0 0 chr12 77573043 77573110 -43684420 + ID4 SINE ID 2 68 -15 2 1176 399 242 66 0 chr12 77573539 77573630 -43683900 + PB1D10 SINE Alu 1 97 -20 2 1176 502 232 115 77 chr12 77573632 77573814 -43683716 + B3A SINE B2 10 198 0 2 1176 311 78 20 0 chr12 77574169 77574220 -43683310 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 2 1176 1204 55 0 7 chr12 77574401 77574549 -43682981 + B1_Mus2 SINE Alu 1 147 0 2 1176 459 0 0 0 chr12 77574582 77574633 -43682897 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1176 326 246 0 0 chr12 77574696 77574765 -43682765 - RSINE1 SINE B4 -60 105 37 2 1176 905 86 46 79 chr12 77575440 77575592 -43681938 + B1_Mus2 SINE Alu 1 147 0 2 1176 674 179 42 63 chr12 77575879 77576022 -43681508 - RSINE1 SINE B4 -21 144 5 2 1176 239 227 15 15 chr12 77576031 77576098 -43681432 - L1MC3 LINE L1 -1675 6110 6044 2 1176 703 191 29 22 chr12 77576099 77576238 -43681292 + ID_B1 SINE B4 80 219 -5 2 1176 224 261 58 0 chr12 77576378 77576447 -43681083 - PB1D10 SINE Alu 0 117 45 2 1176 257 289 36 0 chr12 77576665 77576748 -43680782 - RMER1C Other Other -3 1339 1254 2 1176 514 185 191 28 chr12 77576685 77576863 -43680667 - Lx8 LINE L1 -2 7471 7265 2 1176 422 224 0 56 chr12 77576866 77576953 -43680577 - PB1D10 SINE Alu -14 103 22 2 1176 472 141 0 25 chr12 77576953 77577033 -43680497 + RMER17C LTR ERVK 1 78 -332 2 1176 327 49 0 0 chr12 77577074 77577115 -43680415 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1176 469 248 17 69 chr12 77577123 77577206 -43680324 - RMER17C LTR ERVK -246 164 88 2 1176 542 15 15 0 chr12 77577206 77577273 -43680257 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1176 469 248 17 69 chr12 77577273 77577362 -43680168 - RMER17C LTR ERVK -323 87 1 2 1176 360 295 102 92 chr12 77577449 77577659 -43679871 + L1ME3B LINE L1 4812 5029 -1117 2 1176 1229 34 0 20 chr12 77577659 77577808 -43679722 - B1_Mm SINE Alu 0 147 2 2 1176 276 30 0 0 chr12 77577808 77577841 -43679689 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1176 1190 30 0 0 chr12 77577841 77577974 -43679556 - B1_Mus2 SINE Alu -10 137 5 2 1176 360 295 102 92 chr12 77577974 77578125 -43679405 + L1ME3B LINE L1 5030 5181 -965 2 1176 1215 111 33 0 chr12 77578125 77578305 -43679225 + B2_Mm1t SINE B2 2 187 -6 2 1176 360 295 102 92 chr12 77578305 77578351 -43679179 + L1ME3B LINE L1 5182 5224 -922 2 1176 310 328 14 56 chr12 77578393 77578535 -43678995 + L1ME3B LINE L1 5748 5883 -357 2 1176 334 316 54 54 chr12 77578587 77578734 -43678796 + RSINE1 SINE B4 4 150 -15 2 1176 22 0 0 0 chr12 77578734 77578756 -43678774 + AT_rich Low_complexity Low_complexity 1 22 0 2 1176 1196 173 5 33 chr12 77578969 77579184 -43678346 - B3 SINE B2 -5 211 3 2 1176 21 0 0 0 chr12 77579789 77579810 -43677720 + GC_rich Low_complexity Low_complexity 1 21 0 2 1176 581 290 7 33 chr12 77580191 77580341 -43677189 + MER58A DNA MER1_type 9 154 -70 2 1176 207 0 0 0 chr12 77580717 77580740 -43676790 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1176 1455 74 32 0 chr12 77580772 77580961 -43676569 + B2_Mm2 SINE B2 1 195 0 2 1176 262 296 92 0 chr12 77581009 77581107 -43676423 + LTR88b LTR Gypsy? 725 831 -6 2 1176 479 240 71 16 chr12 77581157 77581284 -43676246 - MLT1F LTR MaLR -8 540 407 2 1176 309 341 111 24 chr12 77581327 77581453 -43676077 - MLT1F LTR MaLR -264 305 169 2 1176 2003 150 0 60 chr12 77581807 77582154 -43675376 + ORR1A2 LTR MaLR 1 326 0 2 1176 9840 143 37 121 chr12 77582154 77582735 -43674795 + ORR1A2-int LTR MaLR 1 597 -1366 2 1176 1176 62 7 0 chr12 77582735 77582880 -43674650 + B1_Mus2 SINE Alu 1 146 -1 2 1176 9840 143 37 121 chr12 77582880 77584441 -43673089 + ORR1A2-int LTR MaLR 598 1962 -1 2 1176 2304 101 3 58 chr12 77584442 77584788 -43672742 + ORR1A2 LTR MaLR 1 327 0 2 1176 510 238 135 21 chr12 77584799 77584992 -43672538 + MLT1F LTR MaLR 138 352 -196 2 1176 237 191 0 0 chr12 77584982 77585024 -43672506 + RSINE1 SINE B4 14 55 -110 2 1176 263 244 18 36 chr12 77585082 77585256 -43672274 + (CA)n Simple_repeat Simple_repeat 1 170 0 2 1176 420 184 0 0 chr12 77585267 77585365 -43672165 + (CA)n Simple_repeat Simple_repeat 1 98 0 2 1176 2741 39 6 0 chr12 77585433 77585768 -43671762 - ORR1A1 LTR MaLR -1 345 9 2 1176 920 140 0 51 chr12 77585771 77585929 -43671601 + B1_Mur4 SINE Alu 1 150 0 2 1176 21 0 0 0 chr12 77586859 77586880 -43670650 + AT_rich Low_complexity Low_complexity 1 21 0 2 1176 740 248 17 155 chr12 77587040 77587331 -43670199 + MTE2a LTR MaLR 1 251 -128 2 1176 424 261 89 42 chr12 77587310 77587329 -43670201 - B4A SINE B4 -76 216 168 2 1176 816 67 0 0 chr12 77587329 77587433 -43670097 - B1_Mus1 SINE Alu -44 104 1 2 1176 424 261 89 42 chr12 77587433 77587478 -43670052 - B4A SINE B4 -76 167 41 2 1176 468 282 133 16 chr12 77588010 77588266 -43669264 + L1MC4 LINE L1 7378 7663 -379 2 1176 1213 83 0 17 chr12 77588567 77588739 -43668791 + B2_Mm2 SINE B2 2 170 -25 2 1176 1615 32 5 0 chr12 77588847 77589035 -43668495 + B2_Mm1t SINE B2 1 189 -4 2 1176 358 385 26 10 chr12 77589086 77589280 -43668250 - MLT1G1 LTR MaLR -381 198 2 2 1176 427 194 10 51 chr12 77589328 77589426 -43668104 - B1_Mur3 SINE Alu -1 148 55 2 1176 1317 64 35 0 chr12 77590463 77590636 -43666894 + B2_Mm1t SINE B2 1 179 -14 2 1176 337 77 19 37 chr12 77590649 77590703 -43666827 + B2_Mm2 SINE B2 47 99 -96 2 1176 29 0 0 0 chr12 77590727 77590756 -43666774 + AT_rich Low_complexity Low_complexity 1 29 0 2 1176 543 73 0 0 chr12 77590765 77590847 -43666683 + L1Md_F2 LINE L1 6501 6582 0 2 1176 841 175 73 0 chr12 77590863 77591000 -43666530 + B1_Mur2 SINE Alu 2 148 -1 2 1176 275 196 0 82 chr12 77591312 77591373 -43666157 + tRNA-Ala-GCY_ tRNA tRNA 11 66 -9 2 1176 238 299 0 69 chr12 77591373 77591384 -43666146 + ID4_ SINE ID 17 83 0 2 1176 1304 196 146 49 chr12 77591643 77591992 -43665538 + MTD LTR MaLR 37 419 0 2 1176 1157 277 36 40 chr12 77592219 77592293 -43665237 + L1MB8 LINE L1 5571 5645 -533 3 1176 1937 167 84 8 chr12 77592293 77592650 -43664880 + ORR1C2 LTR MaLR 1 384 0 3 1176 1157 277 36 40 chr12 77592650 77593071 -43664459 + L1MB8 LINE L1 5646 6064 -114 3 1176 1602 42 5 0 chr12 77593079 77593269 -43664261 + B2_Mm1a SINE B2 1 191 -2 3 1176 1225 75 0 0 chr12 77593802 77593949 -43663581 - B1_Mm SINE Alu 0 147 1 3 1176 180 0 0 0 chr12 77594118 77594138 -43663392 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 1176 1251 48 0 13 chr12 77594215 77594364 -43663166 + B1_Mus1 SINE Alu 2 148 0 3 1177 330 98 0 0 chr12 77594823 77594874 -43662656 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1177 342 0 0 0 chr12 77594874 77594911 -43662619 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1177 357 245 226 0 chr12 77595267 77595373 -43662157 + RSINE1 SINE B4 2 131 -34 3 1177 537 193 0 0 chr12 77595377 77595522 -43662008 + (TG)n Simple_repeat Simple_repeat 2 146 0 3 1177 554 197 9 0 chr12 77595535 77595774 -43661756 + (TG)n Simple_repeat Simple_repeat 1 241 0 3 1177 253 282 12 37 chr12 77595791 77595872 -43661658 - ID_B1 SINE B4 -48 176 98 3 1177 391 331 41 0 chr12 77596043 77596164 -43661366 - MIRb SINE MIR -109 159 34 3 1177 735 261 80 5 chr12 77596853 77597053 -43660477 + B3 SINE B2 2 216 0 3 1177 837 103 79 0 chr12 77597089 77597215 -43660315 + B1_Mus2 SINE Alu 2 137 -10 3 1177 225 246 0 17 chr12 77597222 77597280 -43660250 + G-rich Low_complexity Low_complexity 3 59 0 3 1177 361 161 0 16 chr12 77597617 77597680 -43659850 + RSINE1 SINE B4 3 64 -101 3 1177 863 182 7 53 chr12 77597782 77597933 -43659597 + B1_Mur1 SINE Alu 6 149 0 3 1177 587 241 62 28 chr12 77597941 77598086 -43659444 + B1_Mur4 SINE Alu 1 150 0 3 1177 227 105 53 0 chr12 77598224 77598262 -43659268 + ID_B1 SINE B4 184 223 -1 3 1177 854 157 6 17 chr12 77598264 77598445 -43659085 + GA-rich Low_complexity Low_complexity 2 180 0 3 1177 205 161 0 0 chr12 77598445 77598476 -43659054 + polypurine Low_complexity Low_complexity 5 35 0 3 1177 1116 170 8 82 chr12 77598497 77598740 -43658790 + URR1A DNA MER1_type 1 225 -1 3 1177 194 91 30 0 chr12 77598844 77598877 -43658653 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 3 1177 767 262 17 6 chr12 77599252 77599425 -43658105 + ID_B1 SINE B4 46 220 -4 3 1177 1164 33 0 62 chr12 77599425 77599617 -43657913 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1177 281 347 56 35 chr12 77599617 77599640 -43657890 + B4A SINE B4 224 245 -47 3 1177 623 280 77 29 chr12 77599855 77600127 -43657403 + L1ME1 LINE L1 5891 6175 -4 3 1177 429 20 0 0 chr12 77600331 77600381 -43657149 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1177 622 246 63 7 chr12 77600400 77600543 -43656987 - ID_B1 SINE B4 -1 223 73 3 1177 547 179 179 0 chr12 77601401 77601507 -43656023 + B1_Mus1 SINE Alu 1 125 -23 3 1177 414 83 0 0 chr12 77601574 77601639 -43655891 - PB1D9 SINE Alu -83 66 2 3 1177 326 232 0 0 chr12 77601587 77601656 -43655874 - B4 SINE B4 -154 138 70 3 1177 1421 164 138 108 chr12 77602009 77602345 -43655185 - ORR1C2 LTR MaLR -2 382 32 3 1177 636 81 0 0 chr12 77602345 77602432 -43655098 + (TTTC)n Simple_repeat Simple_repeat 1 87 0 3 1177 1156 62 7 7 chr12 77602433 77602579 -43654951 - B1_Mm SINE Alu -1 146 1 3 1177 1421 164 138 108 chr12 77602579 77602609 -43654921 - ORR1C2 LTR MaLR -353 31 3 3 1177 893 153 28 0 chr12 77602648 77602792 -43654738 - B1_Mus1 SINE Alu 0 148 1 3 1177 1019 48 0 0 chr12 77604741 77604865 -43652665 - B1_Mus2 SINE Alu -21 126 3 3 1177 401 296 28 21 chr12 77605197 77605342 -43652188 + L1MB8 LINE L1 6021 6166 -12 3 1177 315 0 0 0 chr12 77605640 77605675 -43651855 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1177 672 214 0 60 chr12 77605714 77605863 -43651667 + B1F SINE Alu 1 140 -9 3 1177 1204 68 0 0 chr12 77605935 77606081 -43651449 + B1_Mus2 SINE Alu 2 147 0 3 1177 1407 90 32 0 chr12 77606130 77606318 -43651212 + B2_Mm2 SINE B2 2 195 0 3 1177 207 0 0 0 chr12 77606383 77606406 -43651124 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1177 236 353 165 74 chr12 77606450 77606692 -43650838 - MER115 DNA Tip100 -254 439 176 3 1177 1258 48 0 0 chr12 77606864 77607009 -43650521 + B1_Mus1 SINE Alu 1 145 -3 3 1177 189 0 0 0 chr12 77607009 77607030 -43650500 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3 1177 267 379 95 0 chr12 77607030 77607125 -43650405 - PB1 SINE Alu -17 110 7 3 1177 249 291 52 52 chr12 77607098 77607214 -43650316 + MER3 DNA MER1_type 92 207 -2 3 1177 1141 134 109 43 chr12 77608220 77608430 -43649100 - URR1A DNA MER1_type -2 224 1 3 1177 182 307 33 43 chr12 77608558 77608650 -43648880 - MIR SINE MIR -164 98 8 3 1177 820 200 99 35 chr12 77609259 77609293 -43648237 - B3 SINE B2 0 216 185 3 1177 288 0 0 0 chr12 77609293 77609325 -43648205 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 3 1177 820 200 99 35 chr12 77609325 77609492 -43648038 - B3 SINE B2 -32 184 2 3 1177 464 227 85 214 chr12 77609514 77609592 -43647938 - B3A SINE B2 -2 196 137 3 1177 1246 41 0 13 chr12 77609592 77609741 -43647789 + B1_Mus2 SINE Alu 1 147 0 3 1177 464 227 85 214 chr12 77609741 77609886 -43647644 - B3A SINE B2 -62 136 2 3 1177 186 133 0 0 chr12 77609918 77609948 -43647582 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1177 290 308 68 45 chr12 77610241 77610418 -43647112 - MLT1C LTR MaLR -33 434 254 3 1177 245 313 8 34 chr12 77610772 77610891 -43646639 - BC1_Mm scRNA scRNA -21 131 16 3 1177 236 318 15 0 chr12 77610899 77610965 -43646565 + Tigger5 DNA MER2_type 1 67 -2339 3 1177 1214 232 138 98 chr12 77610987 77611232 -43646298 + Lx8 LINE L1 6688 6955 -518 3 1177 1562 188 20 111 chr12 77611232 77611324 -43646206 + ORR1D1 LTR MaLR 1 89 -285 3 1177 1091 36 58 0 chr12 77611324 77611463 -43646067 + B1_Mus2 SINE Alu 1 147 0 3 1177 1562 188 20 111 chr12 77611463 77611777 -43645753 + ORR1D1 LTR MaLR 90 370 -4 3 1177 827 165 57 62 chr12 77611778 77611972 -43645558 + B2_Mm2 SINE B2 3 195 0 3 1177 1214 232 138 98 chr12 77611972 77612245 -43645285 + Lx8 LINE L1 6956 7229 -244 3 1177 633 49 0 0 chr12 77612245 77612326 -43645204 + (TTTC)n Simple_repeat Simple_repeat 3 83 0 3 1177 1239 51 19 0 chr12 77612326 77612482 -43645048 - B2_Mm1a SINE B2 -33 160 2 3 1177 753 182 80 0 chr12 77612507 77612644 -43644886 - B1_Mur4 SINE Alu -1 149 2 3 1177 1506 68 0 5 chr12 77612667 77612859 -43644671 - B2_Mm1t SINE B2 -2 191 1 3 1177 322 315 29 45 chr12 77612917 77613160 -43644370 - L1MC4a LINE L1 -1948 5934 5696 3 1177 1134 55 13 20 chr12 77613311 77613460 -43644070 + B1_Mus1 SINE Alu 1 148 0 3 1177 501 142 415 0 chr12 77614401 77614507 -43643023 - B1_Mur4 SINE Alu 0 150 1 3 1177 28 48 0 0 chr12 77614509 77614551 -43642979 + AT_rich Low_complexity Low_complexity 1 42 0 3 1177 2386 93 9 36 chr12 77614554 77614822 -43642708 + ORR1A3 LTR MaLR 1 271 -55 3 1177 1398 75 5 16 chr12 77614822 77615012 -43642518 + B2_Mm1a SINE B2 2 189 -4 3 1177 2386 93 9 36 chr12 77615012 77615078 -43642452 + ORR1A3 LTR MaLR 272 326 0 3 1177 696 166 311 0 chr12 77615078 77615229 -43642301 - B3 SINE B2 -14 202 5 3 1177 534 259 0 106 chr12 77616522 77616606 -43640924 + ID SINE ID 2 74 -150 3 1177 1503 73 16 0 chr12 77616606 77616798 -43640732 + B2_Mm2 SINE B2 1 195 0 3 1177 534 259 0 106 chr12 77616798 77616864 -43640666 + ID_B1 SINE B4 75 136 -88 3 1177 990 225 19 5 chr12 77616995 77617205 -43640325 + B3 SINE B2 1 213 -3 3 1177 795 208 93 23 chr12 77617243 77617415 -43640115 + ID_B1 SINE B4 6 189 -35 3 1177 23 33 0 0 chr12 77617589 77617619 -43639911 + AT_rich Low_complexity Low_complexity 1 30 0 3 1177 704 193 37 7 chr12 77617621 77617757 -43639773 + B1_Mur2 SINE Alu 8 147 -2 3 1177 1280 47 0 0 chr12 77617773 77617921 -43639609 + B1_Mus1 SINE Alu 1 148 0 3 1177 377 129 0 14 chr12 77617921 77617992 -43639538 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 3 1177 307 298 14 78 chr12 77618197 77618339 -43639191 - L1M4b LINE L1 -5002 2332 2200 3 1177 727 108 72 0 chr12 77618354 77618465 -43639065 + PB1D9 SINE Alu 1 119 -1 3 1177 224 157 0 19 chr12 77618465 77618517 -43639013 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 3 1177 274 174 115 11 chr12 77618517 77618604 -43638926 - L1MB2 LINE L1 -27 6144 6049 3 1177 234 156 0 0 chr12 77618604 77618649 -43638881 + T-rich Low_complexity Low_complexity 1 45 0 3 1177 1269 54 0 0 chr12 77618652 77618799 -43638731 - B1_Mus1 SINE Alu 0 148 2 3 1177 642 310 41 0 chr12 77618804 77619072 -43638458 - L1MB1 LINE L1 -114 6054 5776 3 1177 390 208 16 16 chr12 77619339 77619416 -43638114 + polypyrimidine Low_complexity Low_complexity 54 128 0 3 1177 1235 54 7 0 chr12 77619416 77619563 -43637967 - B1_Mus1 SINE Alu 0 148 1 3 1177 390 208 16 16 chr12 77619563 77619612 -43637918 + polypyrimidine Low_complexity Low_complexity 3 53 0 3 1177 22 0 0 0 chr12 77619630 77619652 -43637878 + AT_rich Low_complexity Low_complexity 1 22 0 3 1177 741 167 71 21 chr12 77619676 77619817 -43637713 - B1_Mur2 SINE Alu 0 149 2 3 1177 25 51 0 0 chr12 77619821 77619860 -43637670 + AT_rich Low_complexity Low_complexity 1 39 0 3 1177 336 200 35 123 chr12 77620585 77620699 -43636831 - MER3 DNA MER1_type -7 202 99 3 1177 233 191 0 125 chr12 77620783 77620855 -43636675 - ID_B1 SINE B4 -1 223 161 3 1177 30 0 0 0 chr12 77620855 77620885 -43636645 + AT_rich Low_complexity Low_complexity 1 30 0 3 1177 341 273 0 13 chr12 77621013 77621091 -43636439 - B4 SINE B4 -207 85 9 3 1177 201 74 0 0 chr12 77621114 77621141 -43636389 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 1177 811 119 17 0 chr12 77621142 77621260 -43636270 - PB1D9 SINE Alu 0 120 1 3 1177 494 198 0 0 chr12 77621285 77621366 -43636164 + PB1D9 SINE Alu 1 81 -39 4 1177 398 184 125 92 chr12 77621295 77621373 -43636157 + MT2B LTR ERVL 175 243 -358 4 1177 221 0 35 0 chr12 77621373 77621402 -43636128 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 4 1177 398 184 125 92 chr12 77621402 77621443 -43636087 + MT2B LTR ERVL 244 297 -304 4 1177 212 326 0 0 chr12 77621410 77621453 -43636077 - RSINE1 SINE B4 -122 43 1 4 1177 453 229 28 19 chr12 77621579 77621686 -43635844 - PB1D9 SINE Alu -1 119 12 4 1177 416 234 10 50 chr12 77621683 77621782 -43635748 - MER3 DNA MER1_type -96 113 19 3 1177 2524 140 2 37 chr12 77622093 77622277 -43635253 - ORR1B1 LTR MaLR 0 394 220 4 1177 270 0 0 0 chr12 77622277 77622307 -43635223 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1177 2524 140 2 37 chr12 77622307 77622530 -43635000 - ORR1B1 LTR MaLR -175 219 1 4 1177 1151 197 85 16 chr12 77623013 77623261 -43634269 - ORR1C2 LTR MaLR -5 379 115 4 1177 723 181 20 74 chr12 77623255 77623404 -43634126 - B1_Mus1 SINE Alu -1 147 7 4 1177 495 115 152 54 chr12 77623410 77623502 -43634028 - ORR1C2 LTR MaLR -273 101 1 4 1177 820 245 5 71 chr12 77623656 77623880 -43633650 + B3 SINE B2 1 209 -7 4 1177 2449 137 213 12 chr12 77624109 77624588 -43632942 + RMER15 LTR ERVL 1 575 0 4 1177 1040 186 19 5 chr12 77624976 77625187 -43632343 - RCHARR1 DNA MER1_type -3 971 758 4 1177 560 160 30 0 chr12 77625188 77625288 -43632242 + B1_Mur3 SINE Alu 39 141 -8 4 1177 1130 202 0 5 chr12 77625308 77625522 -43632008 - B3 SINE B2 0 216 4 4 1177 936 174 78 102 chr12 77625530 77625589 -43631941 - RCHARR1 DNA MER1_type -440 534 491 4 1177 387 268 0 0 chr12 77625589 77625671 -43631859 - ID4 SINE ID 0 83 2 4 1177 936 174 78 102 chr12 77625671 77625855 -43631675 - RCHARR1 DNA MER1_type -484 490 297 4 1177 333 304 71 0 chr12 77625867 77625979 -43631551 - RCHARR1 DNA MER1_type -721 253 134 4 1177 273 119 0 0 chr12 77626187 77626229 -43631301 + (CAGG)n Simple_repeat Simple_repeat 3 44 0 4 1177 188 171 0 89 chr12 77626601 77626646 -43630884 - L4 LINE RTE -1784 245 205 4 1177 1910 161 98 24 chr12 77626659 77627035 -43630495 - RMER19B LTR ERVK 0 902 499 4 1177 305 217 422 9 chr12 77627755 77627871 -43629659 + B3A SINE B2 1 164 -34 4 1177 318 67 0 0 chr12 77627872 77627917 -43629613 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1177 617 234 36 0 chr12 77627948 77628085 -43629445 + B1_Mur1 SINE Alu 1 142 -7 4 1177 354 299 41 0 chr12 77628115 77628229 -43629301 + ID_B1 SINE B4 66 179 -45 4 1177 254 284 71 31 chr12 77628160 77628258 -43629272 + B1_Mur4 SINE Alu 28 129 -21 4 1177 328 148 0 18 chr12 77629116 77629171 -43628359 - PB1D7 SINE Alu -1 119 66 4 1177 1117 184 70 15 chr12 77629242 77629441 -43628089 - B3 SINE B2 -6 210 1 4 1177 1350 238 62 74 chr12 77629511 77630019 -43627511 + MT2B LTR ERVL 3 601 0 4 1177 237 240 49 74 chr12 77630029 77630096 -43627434 + PB1 SINE Alu 32 93 -34 4 1177 340 315 34 34 chr12 77630096 77630244 -43627286 + B1F1 SINE Alu 1 148 -1 4 1177 237 240 49 74 chr12 77630244 77630257 -43627273 + PB1 SINE Alu 94 110 -17 4 1177 375 250 0 0 chr12 77630262 77630334 -43627196 + ID4 SINE ID 2 73 -10 4 1177 777 256 115 5 chr12 77630672 77631115 -43626415 - L1M3 LINE L1 -378 5800 5274 4 1177 189 0 0 0 chr12 77631117 77631138 -43626392 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1177 856 145 7 30 chr12 77631190 77631325 -43626205 - B1_Mur2 SINE Alu -16 133 2 4 1177 310 286 79 30 chr12 77631329 77631430 -43626100 - B1F SINE Alu 0 149 44 4 1177 238 250 0 0 chr12 77631581 77631629 -43625901 - ID4 SINE ID -1 82 35 4 1177 232 244 124 58 chr12 77632453 77632607 -43624923 + MIR SINE MIR 20 171 -105 4 1177 233 265 50 31 chr12 77632621 77632732 -43624798 + MIRc SINE MIR 70 182 -80 4 1177 231 246 35 235 chr12 77633512 77633529 -43624001 + MT2B LTR ERVL 152 188 -413 4 1177 407 252 116 45 chr12 77633529 77633641 -43623889 + PB1D7 SINE Alu 1 120 0 4 1177 231 246 35 235 chr12 77633641 77633682 -43623848 + MT2B LTR ERVL 189 287 -314 4 1177 399 219 0 12 chr12 77633656 77633739 -43623791 + ID_B1 SINE B4 86 167 -57 4 1177 392 213 42 92 chr12 77633739 77633775 -43623755 + PB1D10 SINE Alu 5 117 0 4 1177 22 0 0 0 chr12 77633967 77633989 -43623541 + GC_rich Low_complexity Low_complexity 1 22 0 4 1177 278 82 41 0 chr12 77634504 77634553 -43622977 + (TCCC)n Simple_repeat Simple_repeat 1 51 0 4 1177 366 311 78 67 chr12 77637453 77637646 -43619884 + MIRb SINE MIR 26 220 -48 4 1177 385 103 23 11 chr12 77638798 77638852 -43618678 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 4 1177 1112 51 58 0 chr12 77638852 77638990 -43618540 + B1_Mus1 SINE Alu 1 146 -2 4 1177 385 103 23 11 chr12 77638990 77639023 -43618507 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1177 289 256 151 40 chr12 77639235 77639361 -43618169 - B1_Mur2 SINE Alu -9 140 1 4 1177 235 283 174 61 chr12 77639861 77639959 -43617571 - RSINE1 SINE B4 0 165 57 4 1177 34 0 0 0 chr12 77640003 77640037 -43617493 + AT_rich Low_complexity Low_complexity 1 34 0 4 1177 565 317 47 21 chr12 77640134 77640324 -43617206 - ID_B1 SINE B4 -28 196 2 4 1177 207 0 0 0 chr12 77640333 77640356 -43617174 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 4 1177 207 0 0 0 chr12 77640416 77640439 -43617091 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1177 27 0 0 0 chr12 77640448 77640475 -43617055 + AT_rich Low_complexity Low_complexity 1 27 0 4 1177 939 183 194 0 chr12 77640475 77640655 -43616875 - B3 SINE B2 0 216 2 4 1177 821 154 0 0 chr12 77640675 77640792 -43616738 + B3 SINE B2 14 130 -86 4 1177 918 163 197 0 chr12 77640805 77640983 -43616547 + B3 SINE B2 4 216 0 4 1177 1212 112 67 0 chr12 77641013 77641191 -43616339 - B2_Mm2 SINE B2 -3 192 3 4 1177 234 0 0 0 chr12 77641221 77641247 -43616283 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 1177 339 85 0 0 chr12 77641252 77641299 -43616231 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1177 196 367 17 0 chr12 77641377 77641437 -43616093 + L2c LINE L2 3321 3381 -6 4 1177 417 269 11 0 chr12 77641502 77641595 -43615935 - PB1D10 SINE Alu -23 94 1 4 1177 357 274 26 26 chr12 77642237 77642353 -43615177 + Tigger15a DNA TcMar 500 615 -100 4 1177 22 0 0 0 chr12 77642481 77642503 -43615027 + AT_rich Low_complexity Low_complexity 1 22 0 4 1177 1063 242 44 85 chr12 77643286 77643782 -43613748 - L1MB8 LINE L1 0 6178 5703 4 1177 354 246 14 14 chr12 77643782 77643856 -43613674 + ID4_ SINE ID 3 76 -7 4 1177 1528 58 5 0 chr12 77643889 77644077 -43613453 + B2_Mm1a SINE B2 1 189 -4 4 1177 1263 48 0 0 chr12 77644086 77644232 -43613298 + B1_Mus2 SINE Alu 2 147 0 4 1177 320 218 99 91 chr12 77644242 77644363 -43613167 - L1MB8 LINE L1 -466 5718 5597 4 1177 204 233 0 0 chr12 77644375 77644418 -43613112 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 1177 441 239 56 60 chr12 77644419 77644603 -43612927 - B4 SINE B4 0 292 99 4 1177 1211 68 0 0 chr12 77644633 77644780 -43612750 - B1_Mus2 SINE Alu 0 147 1 4 1177 180 77 0 0 chr12 77644934 77644960 -43612570 + (G)n Simple_repeat Simple_repeat 1 26 0 4 1177 532 252 16 24 chr12 77645134 77645260 -43612270 - B1_Mur4 SINE Alu -1 149 25 4 1177 1457 69 21 0 chr12 77645273 77645461 -43612069 + B2_Mm1a SINE B2 2 193 0 4 1177 855 157 5 80 chr12 77645472 77645659 -43611871 + B2_Mm2 SINE B2 1 173 -22 4 1177 525 135 0 0 chr12 77645675 77645764 -43611766 + (TGGA)n Simple_repeat Simple_repeat 1 89 0 4 1177 407 238 83 28 chr12 77645775 77645883 -43611647 - RSINE1 SINE B4 -41 124 11 4 1177 305 239 170 98 chr12 77645983 77646136 -43611394 - RSINE1 SINE B4 0 165 2 4 1177 300 316 107 34 chr12 77646384 77646561 -43610969 + L2a LINE L2 3183 3372 -54 4 1177 184 274 0 19 chr12 77647556 77647608 -43609922 + MIR SINE MIR 114 164 -98 4 1177 271 291 69 11 chr12 77649695 77649782 -43607748 - ID_B1 SINE B4 -131 93 2 4 1177 224 305 87 123 chr12 77650179 77650512 -43607018 + L2c LINE L2 3027 3347 -40 4 1177 267 282 93 39 chr12 77650728 77650857 -43606673 + L2a LINE L2 3291 3426 0 4 1177 1358 178 52 118 chr12 77650946 77651329 -43606201 - ORR1C2 LTR MaLR -2 382 25 4 1177 285 230 0 0 chr12 77651835 77651909 -43605621 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1177 513 259 59 65 chr12 77651909 77652062 -43605468 - RSINE1 SINE B4 0 165 14 4 1177 1063 66 80 0 chr12 77652657 77652794 -43604736 - B1_Mus1 SINE Alu 0 148 1 4 1177 281 152 237 0 chr12 77652810 77652869 -43604661 - ID4_ SINE ID -10 73 1 4 1177 911 218 88 0 chr12 77652918 77653111 -43604419 + B3 SINE B2 1 210 -6 4 1177 438 167 0 0 chr12 77653877 77653961 -43603569 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1177 413 200 40 2 chr12 77654042 77654131 -43603399 - B3A SINE B2 -125 91 1 4 1177 504 286 176 26 chr12 77654176 77654395 -43603135 - MLT1D LTR MaLR -170 335 98 4 1177 1252 153 42 0 chr12 77654395 77654610 -43602920 + URR1A DNA MER1_type 3 226 0 4 1177 504 286 176 26 chr12 77654610 77654663 -43602867 - MLT1D LTR MaLR -408 97 23 4 1177 204 125 0 0 chr12 77656319 77656351 -43601179 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 4 1177 916 96 6 88 chr12 77656610 77656770 -43600760 + B1_Mus1 SINE Alu 1 147 -1 4 1177 205 182 0 0 chr12 77656770 77656814 -43600716 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 1177 201 94 0 0 chr12 77657725 77657757 -43599773 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1177 420 0 50 0 chr12 77658099 77658159 -43599371 + (CAG)n Simple_repeat Simple_repeat 2 64 0 4 1177 907 236 38 9 chr12 77658408 77658618 -43598912 + ID_B1 SINE B4 5 220 -4 4 1177 197 351 75 42 chr12 77658723 77658937 -43598593 - L2c LINE L2 -143 3244 3024 4 1177 376 203 0 0 chr12 77659048 77659112 -43598418 + URR1A DNA MER1_type 42 105 -121 4 1177 1237 55 0 0 chr12 77659655 77659800 -43597730 + B1_Mm SINE Alu 1 145 -2 4 1177 201 147 0 0 chr12 77659801 77659835 -43597695 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1177 255 331 221 22 chr12 77659842 77659978 -43597552 + RSINE1 SINE B4 3 165 0 5 1177 1071 220 38 0 chr12 77660306 77660515 -43597015 - ID_B1 SINE B4 -6 218 2 5 1177 719 238 7 0 chr12 77660699 77660846 -43596684 - RSINE1 SINE B4 -17 148 1 5 1177 565 253 62 36 chr12 77660846 77661071 -43596459 - L1MB3 LINE L1 0 6183 5953 5 1177 240 284 75 77 chr12 77661781 77661921 -43595609 + MIRc SINE MIR 23 155 -107 5 1177 1193 96 44 33 chr12 77662079 77662262 -43595268 + B2_Mm2 SINE B2 1 185 -10 5 1177 511 197 8 79 chr12 77662268 77662395 -43595135 + PB1D9 SINE Alu 3 120 0 5 1177 284 176 147 13 chr12 77662469 77662544 -43594986 - B4 SINE B4 -207 85 1 5 1177 1375 91 16 0 chr12 77662558 77662744 -43594786 - B2_Mm1t SINE B2 -4 189 1 5 1177 420 247 0 0 chr12 77662756 77662841 -43594689 - PB1D7 SINE Alu -13 107 23 5 1177 340 256 129 82 chr12 77662872 77663042 -43594488 - MLT1C LTR MaLR -156 234 57 5 1177 764 132 148 129 chr12 77663622 77663741 -43593789 + URR1B DNA MER1_type 5 146 -79 5 1177 1447 64 26 5 chr12 77663741 77663930 -43593600 + B2_Mm2 SINE B2 2 194 -1 5 1177 764 132 148 129 chr12 77663930 77664027 -43593503 + URR1B DNA MER1_type 147 225 0 5 1177 991 245 95 126 chr12 77668321 77668750 -43588780 - MTD LTR MaLR -28 391 6 5 1177 311 285 12 25 chr12 77668812 77668909 -43588621 + ID4 SINE ID 1 89 -63 5 1177 843 166 34 7 chr12 77668909 77669055 -43588475 + B1_Mur4 SINE Alu 1 150 0 5 1177 251 291 9 97 chr12 77669055 77669071 -43588459 + BC1_Mm scRNA scRNA 90 104 -48 5 1177 440 18 18 0 chr12 77669103 77669160 -43588370 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1177 389 253 0 0 chr12 77669181 77669272 -43588258 + L1MB8 LINE L1 6082 6172 -6 5 1177 411 169 0 11 chr12 77669368 77669458 -43588072 - BC1_Mm scRNA scRNA -33 119 31 5 1177 859 172 0 22 chr12 77669871 77670055 -43587475 + CT-rich Low_complexity Low_complexity 1 180 0 5 1177 1137 128 0 0 chr12 77670055 77670235 -43587295 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1177 261 0 0 0 chr12 77670235 77670264 -43587266 + (CCA)n Simple_repeat Simple_repeat 3 31 0 5 1177 368 218 13 0 chr12 77670467 77670545 -43586985 - RSINE1 SINE B4 -75 90 12 5 1177 611 169 72 33 chr12 77670625 77670778 -43586752 + B2_Mm2 SINE B2 35 193 -2 5 1177 2828 138 51 12 chr12 77670786 77671293 -43586237 - RLTR11A2 LTR ERVK 0 527 1 5 1177 944 300 8 4 chr12 77671293 77671531 -43585999 + B4A SINE B4 50 288 -4 5 1177 771 257 53 14 chr12 77671578 77671787 -43585743 + ID_B1 SINE B4 1 217 -7 5 1177 183 80 0 0 chr12 77673599 77673624 -43583906 + (GGA)n Simple_repeat Simple_repeat 1 25 0 5 1177 493 316 169 20 chr12 77674888 77675207 -43582323 - MLT1A LTR MaLR -7 367 7 5 1177 628 269 0 7 chr12 77675336 77675478 -43582052 + ID_B1 SINE B4 81 221 -3 5 1177 1612 32 5 0 chr12 77675499 77675684 -43581846 - B2_Mm1a SINE B2 -7 186 1 5 1177 237 33 0 0 chr12 77676129 77676159 -43581371 + (CAGAGA)n Simple_repeat Simple_repeat 4 33 0 5 1177 180 0 0 0 chr12 77679556 77679576 -43577954 + (TCCCC)n Simple_repeat Simple_repeat 5 24 0 5 1177 489 17 0 0 chr12 77679843 77679901 -43577629 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1177 239 305 41 21 chr12 77681104 77681201 -43576329 + MER5B DNA MER1_type 18 116 -62 5 1177 643 188 94 0 chr12 77685000 77685128 -43572402 - B1_Mur3 SINE Alu 0 149 10 5 1177 849 76 0 0 chr12 77685415 77685533 -43571997 + (CA)n Simple_repeat Simple_repeat 2 119 0 5 1177 1277 40 0 0 chr12 77685689 77685837 -43571693 - B1_Mus1 SINE Alu 0 148 1 5 1177 347 247 25 0 chr12 77685873 77685954 -43571576 - ID4_ SINE ID 0 83 1 5 1177 30 27 0 0 chr12 77685999 77686036 -43571494 + AT_rich Low_complexity Low_complexity 1 37 0 5 1177 462 194 31 0 chr12 77686036 77686134 -43571396 - B1_Mur1 SINE Alu -6 143 43 5 1177 549 261 28 0 chr12 77686150 77686292 -43571238 - B3A SINE B2 -1 197 52 5 1177 314 234 25 25 chr12 77686299 77686378 -43571152 - ID4 SINE ID -2 81 3 5 1177 251 335 0 0 chr12 77686454 77686529 -43571001 - ID4 SINE ID -63 89 15 5 1177 351 0 0 0 chr12 77686613 77686652 -43570878 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1177 231 170 0 0 chr12 77686783 77686830 -43570700 + A-rich Low_complexity Low_complexity 1 47 0 5 1177 237 237 0 0 chr12 77687050 77687109 -43570421 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 5 1177 241 276 59 141 chr12 77687619 77687754 -43569776 - MIR3 SINE MIR -21 187 64 5 1177 261 0 0 0 chr12 77687882 77687911 -43569619 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1177 973 113 30 0 chr12 77687929 77688062 -43569468 - B1_Mur2 SINE Alu -12 137 1 5 1177 22 0 0 0 chr12 77691330 77691352 -43566178 + GC_rich Low_complexity Low_complexity 1 22 0 5 1177 233 371 40 0 chr12 77691946 77692070 -43565460 - MIR3 SINE MIR -30 178 50 5 1177 866 117 0 0 chr12 77692365 77692493 -43565037 + B1_Mur3 SINE Alu 9 136 -13 5 1177 888 62 0 0 chr12 77692498 77692626 -43564904 + (TTCC)n Simple_repeat Simple_repeat 3 130 0 5 1177 206 224 0 39 chr12 77697307 77697358 -43560172 + G-rich Low_complexity Low_complexity 4 52 0 5 1177 369 0 0 0 chr12 77697598 77697639 -43559891 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1177 303 93 0 0 chr12 77698249 77698292 -43559238 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1177 415 255 49 0 chr12 77700147 77700249 -43557281 - PB1D10 SINE Alu -9 108 2 5 1177 340 324 52 33 chr12 77700948 77701101 -43556429 + MIRc SINE MIR 1 156 -112 5 1177 311 361 64 0 chr12 77701647 77701849 -43555681 + L1MB8 LINE L1 5820 6034 -144 5 1177 729 187 15 7 chr12 77701874 77702009 -43555521 - B1_Mur4 SINE Alu -13 137 2 5 1177 674 166 13 46 chr12 77702159 77702175 -43555355 + ID_B1 SINE B4 78 224 0 5 1177 1058 44 0 0 chr12 77702175 77702311 -43555219 + B1_Mus2 SINE Alu 12 147 0 5 1177 214 26 0 73 chr12 77702331 77702372 -43555158 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1177 407 332 46 11 chr12 77703286 77703481 -43554049 - MIR SINE MIR -31 231 42 5 1177 225 355 134 32 chr12 77703940 77704097 -43553433 + MIR SINE MIR 12 184 -78 5 1177 257 284 40 23 chr12 77705270 77705401 -43552129 + ID2 SINE ID 2 132 -20 5 1177 243 88 0 0 chr12 77705983 77706017 -43551513 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1177 1013 136 0 7 chr12 77706034 77706182 -43551348 + B1_Mur4 SINE Alu 4 150 0 5 1177 549 216 225 11 chr12 77707632 77707810 -43549720 - ID_B1 SINE B4 -7 217 2 5 1177 480 250 33 0 chr12 77710562 77710682 -43546848 + B1F SINE Alu 18 141 -8 5 1177 198 118 0 0 chr12 77710755 77710789 -43546741 + (GAA)n Simple_repeat Simple_repeat 2 35 0 5 1177 414 291 18 18 chr12 77710804 77710916 -43546614 + PB1D10 SINE Alu 1 112 -5 5 1177 195 406 133 0 chr12 77711934 77712062 -43545468 + L2b LINE L2 3231 3375 0 5 1177 232 308 132 0 chr12 77712393 77712484 -43545046 - MER45A DNA Tip100 0 178 76 5 1177 355 368 52 14 chr12 77714613 77714825 -43542705 + MER47B DNA MER2_type 28 247 -171 5 1177 234 269 82 82 chr12 77714841 77714926 -43542604 - B1F1 SINE Alu -62 87 3 5 1177 222 235 20 0 chr12 77714932 77714983 -43542547 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1177 808 292 32 28 chr12 77714998 77715245 -43542285 - B4A SINE B4 -16 276 29 5 1177 254 360 0 0 chr12 77715268 77715343 -43542187 + MER47B DNA MER2_type 337 411 -7 5 1177 905 208 249 52 chr12 77715871 77716160 -43541370 + ORR1D2 LTR MaLR 25 370 0 5 1177 4943 217 89 64 chr12 77716160 77716790 -43540740 + ORR1D2-int LTR MaLR 1 627 -743 5 1177 279 0 0 0 chr12 77716790 77716821 -43540709 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1177 4943 217 89 64 chr12 77716821 77716861 -43540669 + ORR1D2-int LTR MaLR 628 677 -693 5 1177 868 141 14 27 chr12 77716861 77717007 -43540523 + B1_Mur4 SINE Alu 1 144 -6 5 1177 393 75 0 0 chr12 77717008 77717061 -43540469 + (CACG)n Simple_repeat Simple_repeat 1 53 0 5 1177 4943 217 89 64 chr12 77717061 77717724 -43539806 + ORR1D2-int LTR MaLR 678 1370 0 5 1177 385 198 88 10 chr12 77717724 77717826 -43539704 + ORR1D2 LTR MaLR 1 110 -260 5 1177 251 320 43 74 chr12 77717979 77718068 -43539462 - B4 SINE B4 -126 166 43 5 1177 261 216 0 0 chr12 77718068 77718119 -43539411 - tRNA-Ala-GCY_ tRNA tRNA 0 75 25 5 1177 251 320 43 74 chr12 77718119 77718141 -43539389 - B4 SINE B4 -126 42 10 5 1177 511 203 154 0 chr12 77718331 77718454 -43539076 + B3 SINE B2 1 142 -74 5 1177 462 36 0 0 chr12 77718477 77718533 -43538997 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1177 1285 131 50 32 chr12 77720652 77720873 -43536657 + URR1B DNA MER1_type 1 225 0 5 1177 27 0 0 0 chr12 77721447 77721474 -43536056 + AT_rich Low_complexity Low_complexity 1 27 0 5 1177 286 231 0 0 chr12 77722614 77722666 -43534864 - BC1_Mm scRNA scRNA -99 53 2 5 1177 265 284 0 69 chr12 77722628 77722700 -43534830 - ZP3AR Satellite Satellite -131 81 15 5 1177 188 312 146 67 chr12 77722903 77723068 -43534462 - L4 LINE RTE -772 1257 1080 5 1178 1474 44 28 0 chr12 77726285 77726465 -43531065 - B2_Mm2 SINE B2 -9 186 2 5 1178 209 396 0 0 chr12 77727215 77727311 -43530219 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 1178 246 235 0 0 chr12 77729139 77729190 -43528340 + ID_B1 SINE B4 126 176 -48 5 1178 1178 147 102 5 chr12 77730326 77730531 -43526999 + URR1A DNA MER1_type 1 225 -1 5 1178 390 328 7 76 chr12 77731013 77731158 -43526372 + MTEa LTR MaLR 19 153 -226 5 1178 953 223 69 5 chr12 77731896 77732099 -43525431 - B3 SINE B2 0 216 1 5 1178 489 17 0 0 chr12 77732377 77732435 -43525095 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1178 750 254 140 61 chr12 77732437 77732701 -43524829 - B4 SINE B4 -1 291 7 6 1178 384 172 0 0 chr12 77733746 77733833 -43523697 + (CCA)n Simple_repeat Simple_repeat 3 89 0 6 1178 539 29 14 0 chr12 77733949 77734018 -43523512 + (TCCA)n Simple_repeat Simple_repeat 3 72 0 6 1178 290 316 116 68 chr12 77734051 77734343 -43523187 + L2c LINE L2 3055 3360 -27 6 1178 187 359 109 0 chr12 77735221 77735313 -43522217 - L2b LINE L2 -1 3374 3273 6 1178 1942 197 84 19 chr12 77736912 77737342 -43520188 + MT2A LTR ERVL 1 458 -75 6 1178 303 28 0 0 chr12 77737347 77737383 -43520147 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1178 216 0 0 0 chr12 77737393 77737417 -43520113 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1178 1442 79 32 0 chr12 77737663 77737852 -43519678 + B2_Mm2 SINE B2 1 195 0 6 1178 816 180 0 0 chr12 77737853 77738014 -43519516 + GA-rich Low_complexity Low_complexity 2 162 0 6 1178 1401 180 167 0 chr12 77738975 77739292 -43518238 + ORR1D1 LTR MaLR 1 370 -4 6 1178 1669 36 0 0 chr12 77739292 77739485 -43518045 + B2_Mm1a SINE B2 1 193 0 6 1178 229 355 69 31 chr12 77739587 77739747 -43517783 + MTEa LTR MaLR 213 378 -1 6 1178 978 256 14 0 chr12 77739878 77740085 -43517445 + B3 SINE B2 1 210 -6 6 1178 504 327 106 21 chr12 77740480 77740945 -43516585 + L1MC4a LINE L1 5415 5895 -1987 6 1178 217 281 0 89 chr12 77741110 77741200 -43516330 + ID4_ SINE ID 2 83 0 6 1178 350 204 0 176 chr12 77741385 77741516 -43516014 + L1MC4a LINE L1 6014 6121 -3 6 1178 1274 222 76 121 chr12 77742357 77742834 -43514696 + MT2B LTR ERVL 10 601 0 6 1178 578 306 38 98 chr12 77742858 77743173 -43514357 + RMER10A LTR ERVL 12 307 -135 6 1178 222 189 0 0 chr12 77744323 77744360 -43513170 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 6 1178 633 154 51 12 chr12 77744360 77744695 -43512835 + (TG)n Simple_repeat Simple_repeat 1 347 0 6 1178 955 257 24 16 chr12 77745236 77745489 -43512041 + B4 SINE B4 1 255 -37 6 1178 372 125 0 0 chr12 77748635 77748691 -43508839 - RLTR23 LTR ERV1 0 430 375 6 1178 216 0 0 0 chr12 77749996 77750020 -43507510 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1178 225 226 68 97 chr12 77750277 77750380 -43507150 + LTR89 LTR ERVL? 755 854 -25 6 1178 202 154 26 0 chr12 77751560 77751599 -43505931 + T-rich Low_complexity Low_complexity 2 41 0 6 1178 203 289 100 30 chr12 77752298 77752398 -43505132 - MIRc SINE MIR -71 197 91 6 1178 3764 27 58 4 chr12 77754018 77754469 -43503061 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1178 582 97 16 124 chr12 77754470 77754599 -43502931 + IAPEz-int LTR ERVK 9 123 -6358 6 1178 234 267 0 0 chr12 77754599 77754644 -43502886 + RLTR27 LTR ERVK 231 275 -34 6 1178 230 321 0 0 chr12 77754672 77754725 -43502805 + RLTR27 LTR ERVK 223 275 -34 6 1178 243 327 0 0 chr12 77754751 77754806 -43502724 + RLTR27 LTR ERVK 221 275 -34 6 1178 3708 63 2 18 chr12 77754806 77755309 -43502221 + IAPEz-int LTR ERVK 168 662 -5819 6 1178 2624 64 0 3 chr12 77755309 77755652 -43501878 + IAPEz-int LTR ERVK 1359 1700 -4781 6 1178 6748 31 2 17 chr12 77755643 77756486 -43501044 + IAPEz-int LTR ERVK 5649 6479 -2 6 1178 3762 27 58 4 chr12 77756488 77756939 -43500591 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1178 791 147 325 0 chr12 77759106 77759263 -43498267 + B3 SINE B2 3 210 -6 6 1178 348 332 145 55 chr12 77759343 77759517 -43498013 + L1MC5 LINE L1 7500 7699 -262 6 1178 2030 120 97 20 chr12 77759517 77759858 -43497672 + ORR1B2 LTR MaLR 1 367 0 6 1178 348 332 145 55 chr12 77759858 77759973 -43497557 + L1MC5 LINE L1 7700 7815 -146 6 1178 553 257 87 14 chr12 77760065 77760203 -43497327 + B1F SINE Alu 1 148 -1 6 1178 858 335 98 25 chr12 77760265 77760745 -43496785 - MER44B DNA MER2_type -1 549 35 6 1178 283 321 117 52 chr12 77760780 77761259 -43496271 + L2c LINE L2 2871 3369 -18 6 1178 1787 231 50 5 chr12 77762008 77762404 -43495126 + MTD LTR MaLR 1 414 -5 6 1178 985 151 204 0 chr12 77763605 77763791 -43493739 + URR1A DNA MER1_type 1 224 -2 6 1178 757 211 77 24 chr12 77763829 77763999 -43493531 - MTE2b LTR MaLR 0 379 201 6 1178 238 24 47 47 chr12 77764016 77764059 -43493471 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 6 1178 479 17 17 0 chr12 77764076 77764136 -43493394 + (TTTC)n Simple_repeat Simple_repeat 1 61 0 6 1178 1138 58 44 31 chr12 77764136 77764295 -43493235 - B2_Mm2 SINE B2 -34 161 1 6 1178 356 221 93 0 chr12 77764313 77764399 -43493131 - MTE2b LTR MaLR -228 151 58 6 1178 566 204 0 0 chr12 77764399 77764497 -43493033 - MTE2b LTR MaLR -281 98 1 6 1178 1205 62 0 0 chr12 77764529 77764673 -43492857 - B1_Mus1 SINE Alu -3 145 2 6 1178 251 228 71 60 chr12 77764794 77764878 -43492652 + MIRb SINE MIR 51 135 -133 6 1178 1184 253 144 9 chr12 77765792 77766111 -43491419 - MTE2b LTR MaLR -5 374 13 6 1178 915 163 208 0 chr12 77766113 77766291 -43491239 + B3 SINE B2 2 216 0 6 1178 518 146 144 10 chr12 77766345 77766449 -43491081 + PB1D9 SINE Alu 2 119 -1 6 1178 430 303 141 10 chr12 77766772 77767069 -43490461 + L1ME1 LINE L1 4434 4769 -1377 6 1178 467 192 0 0 chr12 77767081 77767154 -43490376 + B1_Mus2 SINE Alu 2 74 -73 6 1178 393 289 5 144 chr12 77767154 77767270 -43490260 + B4A SINE B4 87 248 -44 6 1178 243 250 12 0 chr12 77767270 77767354 -43490176 + L1ME1 LINE L1 5225 5309 -837 6 1178 504 255 0 82 chr12 77767359 77767517 -43490013 + ID_B1 SINE B4 80 224 0 6 1178 967 121 0 14 chr12 77767376 77767518 -43490012 + B1_Mur4 SINE Alu 11 150 0 6 1178 1137 311 78 32 chr12 77767561 77768269 -43489261 + L1ME1 LINE L1 5290 6029 -150 6 1178 798 251 5 55 chr12 77768583 77768785 -43488745 + B3A SINE B2 7 198 0 6 1178 1137 80 0 0 chr12 77769349 77769601 -43487929 + (TG)n Simple_repeat Simple_repeat 1 252 0 6 1178 286 283 104 0 chr12 77769602 77769708 -43487822 - RSINE1 SINE B4 -41 124 8 6 1178 706 219 112 42 chr12 77769714 77769928 -43487602 - B4A SINE B4 -62 230 2 6 1178 537 38 38 0 chr12 77769999 77770079 -43487451 + (GGAAA)n Simple_repeat Simple_repeat 3 85 0 6 1178 360 303 149 19 chr12 77770954 77771169 -43486361 - MIR SINE MIR -10 252 10 6 1178 551 292 53 11 chr12 77772261 77772448 -43485082 + MIR SINE MIR 32 226 -36 6 1178 275 154 56 37 chr12 77774010 77774064 -43483466 - PB1D9 SINE Alu 0 120 66 6 1178 609 241 9 0 chr12 77774020 77774136 -43483394 - ID_B1 SINE B4 -8 216 100 6 1178 243 281 173 10 chr12 77776254 77776358 -43481172 - L2b LINE L2 -4 3371 3251 6 1178 420 248 56 76 chr12 77776741 77776885 -43480645 - B1F SINE Alu -8 141 1 6 1178 228 303 15 29 chr12 77776907 77776975 -43480555 - B3 SINE B2 -19 197 131 6 1178 1163 52 0 0 chr12 77778542 77778677 -43478853 + B1_Mus1 SINE Alu 4 138 -10 6 1178 372 59 0 0 chr12 77778836 77778887 -43478643 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1178 276 30 0 0 chr12 77778887 77778920 -43478610 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1178 1266 92 17 6 chr12 77779078 77779252 -43478278 + B2_Mm2 SINE B2 3 178 -17 6 1178 222 37 0 0 chr12 77779253 77779280 -43478250 + (GGA)n Simple_repeat Simple_repeat 2 28 0 6 1178 259 219 16 0 chr12 77779602 77779666 -43477864 - B3 SINE B2 0 216 152 6 1178 538 150 0 0 chr12 77779683 77779763 -43477767 - B3A SINE B2 -118 80 1 6 1178 27 0 0 0 chr12 77780339 77780366 -43477164 + AT_rich Low_complexity Low_complexity 1 27 0 6 1178 435 311 20 26 chr12 77780400 77780552 -43476978 - RSINE1 SINE B4 -13 152 2 6 1178 334 295 143 0 chr12 77780668 77780773 -43476757 - PB1 SINE Alu -7 120 1 6 1178 752 298 13 34 chr12 77781339 77781575 -43475955 + MIR SINE MIR 6 236 -26 6 1178 886 164 14 0 chr12 77781771 77781917 -43475613 + B1_Mur4 SINE Alu 1 148 -2 6 1178 522 259 42 0 chr12 77782076 77782219 -43475311 + ID_B1 SINE B4 50 198 -26 6 1178 640 116 0 26 chr12 77782220 77782335 -43475195 + (GGGA)n Simple_repeat Simple_repeat 2 113 0 6 1178 836 126 20 53 chr12 77782610 77782761 -43474769 + B1_Mus2 SINE Alu 2 147 0 6 1178 224 350 31 91 chr12 77783252 77783557 -43473973 - L2a LINE L2 -38 3388 3060 6 1178 270 0 0 0 chr12 77784963 77784993 -43472537 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1178 206 62 31 0 chr12 77785077 77785109 -43472421 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1178 241 234 0 0 chr12 77785137 77785184 -43472346 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1178 539 189 19 21 chr12 77786611 77787100 -43470430 + (CA)n Simple_repeat Simple_repeat 1 487 0 6 1178 644 228 8 8 chr12 77787565 77787693 -43469837 + B1F1 SINE Alu 2 129 -20 6 1178 387 0 0 0 chr12 77787729 77787772 -43469758 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1178 223 327 139 78 chr12 77787973 77788106 -43469424 - MIRb SINE MIR -1 267 137 6 1178 2104 103 22 142 chr12 77788106 77788558 -43468972 + RMER10B LTR ERVL 1 398 0 6 1178 223 327 139 78 chr12 77788558 77788669 -43468861 - MIRb SINE MIR -132 136 8 6 1178 411 98 0 0 chr12 77788871 77788932 -43468598 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 1178 1146 72 0 0 chr12 77789281 77789420 -43468110 - B1_Mus1 SINE Alu -9 139 1 6 1178 1065 140 0 0 chr12 77789587 77789737 -43467793 + B1_Mur4 SINE Alu 1 150 0 6 1178 977 91 14 27 chr12 77789914 77790061 -43467469 + B1_Mus1 SINE Alu 2 146 -2 6 1178 2174 170 64 13 chr12 77792151 77792544 -43464986 + MTC LTR MaLR 1 413 -8 6 1178 313 293 47 0 chr12 77792597 77792707 -43464823 - B1F2 SINE Alu -2 115 1 6 1178 820 239 137 14 chr12 77792966 77793178 -43464352 + 7SK RNA RNA 1 238 -93 6 1178 216 0 0 0 chr12 77793372 77793396 -43464134 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1178 1173 44 0 0 chr12 77793396 77793533 -43463997 - B1_Mus2 SINE Alu -9 138 2 6 1178 183 42 0 0 chr12 77793948 77793972 -43463558 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1178 370 300 86 0 chr12 77793995 77794135 -43463395 + MIRb SINE MIR 86 237 -31 6 1178 577 212 105 8 chr12 77794350 77794483 -43463047 + B1_Mur1 SINE Alu 2 147 -2 6 1178 207 0 0 0 chr12 77794487 77794510 -43463020 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1178 36 23 0 0 chr12 77794718 77794761 -43462769 + AT_rich Low_complexity Low_complexity 1 43 0 6 1178 352 267 130 0 chr12 77794768 77794899 -43462631 + RSINE1 SINE B4 1 148 -17 6 1178 291 28 0 0 chr12 77794908 77794944 -43462586 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1178 754 201 0 7 chr12 77795031 77795166 -43462364 + B3 SINE B2 83 216 0 7 1178 1149 56 21 0 chr12 77795190 77795334 -43462196 - B1_Mus2 SINE Alu 0 147 1 7 1178 1151 75 0 14 chr12 77795365 77795505 -43462025 + B1_Mus1 SINE Alu 1 140 -8 7 1178 729 34 0 0 chr12 77795505 77795593 -43461937 + (GAAAA)n Simple_repeat Simple_repeat 2 89 0 7 1178 284 238 79 0 chr12 77798068 77798131 -43459399 - ID4_ SINE ID -13 70 3 7 1178 1125 49 0 0 chr12 77798196 77798339 -43459191 - B1_Mus1 SINE Alu 0 148 6 7 1178 435 156 0 168 chr12 77798231 77798362 -43459168 - MT2B LTR ERVL -337 264 156 7 1178 562 186 93 0 chr12 77799505 77799602 -43457928 + B3 SINE B2 1 106 -110 7 1178 304 257 14 0 chr12 77799674 77799680 -43457850 + (TA)n Simple_repeat Simple_repeat 2 7 0 7 1178 1155 83 0 0 chr12 77799680 77799825 -43457705 + B1_Mus2 SINE Alu 2 146 -1 7 1178 304 257 14 0 chr12 77799825 77799966 -43457564 + (TA)n Simple_repeat Simple_repeat 1 143 0 7 1178 522 0 0 0 chr12 77800266 77800324 -43457206 + (GA)n Simple_repeat Simple_repeat 2 59 0 7 1178 580 196 70 81 chr12 77800633 77800805 -43456725 + L1MB3 LINE L1 5580 5749 -422 7 1178 742 242 21 5 chr12 77800821 77801012 -43456518 + L1MB3 LINE L1 5982 6175 -8 7 1178 189 0 0 0 chr12 77801087 77801108 -43456422 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 7 1178 1169 113 32 0 chr12 77801267 77801453 -43456077 - URR1A DNA MER1_type 0 226 35 7 1178 1240 54 0 0 chr12 77801679 77801826 -43455704 + B1_Mus2 SINE Alu 1 147 0 7 1178 444 231 26 69 chr12 77801851 77801967 -43455563 + PB1D10 SINE Alu 7 117 0 7 1178 439 310 0 0 chr12 77802138 77802254 -43455276 + PB1D10 SINE Alu 1 116 -1 7 1178 612 227 13 60 chr12 77802259 77802409 -43455121 + RSINE1 SINE B4 22 164 -1 7 1178 825 229 17 6 chr12 77803051 77803231 -43454299 + B3A SINE B2 1 182 -16 7 1178 615 209 101 0 chr12 77803261 77803390 -43454140 + B1_Mus1 SINE Alu 1 142 -6 7 1178 234 81 0 0 chr12 77803391 77803428 -43454102 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 7 1178 23 0 0 0 chr12 77803504 77803527 -43454003 + AT_rich Low_complexity Low_complexity 1 23 0 7 1178 498 285 202 8 chr12 77803895 77804266 -43453264 + L2a LINE L2 2514 2956 -463 7 1178 180 333 39 79 chr12 77804343 77804426 -43453104 + L2a LINE L2 3293 3377 -49 7 1178 1056 149 164 5 chr12 77804426 77804621 -43452909 + URR1A DNA MER1_type 1 226 0 7 1178 180 333 39 79 chr12 77804621 77804664 -43452866 + L2a LINE L2 3378 3413 -13 7 1178 863 280 0 10 chr12 77807401 77807610 -43449920 + B3 SINE B2 9 215 -1 7 1178 208 190 23 23 chr12 77808121 77808164 -43449366 + L3 LINE CR1 4427 4469 -20 7 1178 201 266 69 183 chr12 77808544 77808646 -43448884 + MIRb SINE MIR 50 130 -138 7 1178 276 237 370 8 chr12 77808646 77808765 -43448765 - RSINE1 SINE B4 -3 162 1 7 1178 201 266 69 183 chr12 77808765 77808837 -43448693 + MIRb SINE MIR 131 204 -64 7 1178 415 335 131 80 chr12 77813256 77813746 -43443784 - LTR16E1 LTR ERVL -23 515 1 7 1178 252 0 0 0 chr12 77813780 77813808 -43443722 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1178 180 0 0 0 chr12 77813808 77813827 -43443703 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1178 322 366 30 18 chr12 77814340 77814504 -43443026 + L2 LINE L2 2727 2892 -527 7 1178 297 0 0 0 chr12 77814649 77814682 -43442848 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 7 1178 1196 37 0 0 chr12 77814682 77814818 -43442712 - B1_Mm SINE Alu -11 136 1 7 1178 286 228 0 0 chr12 77815402 77815459 -43442071 + B3A SINE B2 3 59 -139 7 1178 203 0 37 0 chr12 77816151 77816178 -43441352 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1178 439 219 9 95 chr12 77816178 77816285 -43441245 - PB1D7 SINE Alu -10 110 13 7 1178 1403 93 0 10 chr12 77816359 77816554 -43440976 + B2_Mm2 SINE B2 3 195 0 7 1178 743 139 8 0 chr12 77816556 77816685 -43440845 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 7 1178 1383 62 28 0 chr12 77817090 77817267 -43440263 + B2_Mm2 SINE B2 4 185 -10 7 1178 1043 116 0 7 chr12 77817513 77817660 -43439870 + B1_Mur4 SINE Alu 5 150 0 7 1178 826 111 8 0 chr12 77817775 77817892 -43439638 + B3 SINE B2 1 118 -98 7 1178 358 245 10 100 chr12 77818165 77818319 -43439211 + MER57D LTR ERV1 288 432 -2 7 1178 687 108 0 0 chr12 77818331 77818433 -43439097 + (TA)n Simple_repeat Simple_repeat 1 102 0 7 1178 636 252 20 7 chr12 77818539 77818687 -43438843 + B3A SINE B2 1 150 -48 7 1178 399 83 0 0 chr12 77818693 77818753 -43438777 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1178 330 156 188 0 chr12 77818768 77818832 -43438698 - B1_Mus2 SINE Alu 0 147 72 7 1178 543 214 0 104 chr12 77818796 77818961 -43438569 + B1_Mur3 SINE Alu 7 149 0 7 1178 1631 47 0 0 chr12 77819284 77819476 -43438054 - B2_Mm1a SINE B2 0 193 2 7 1178 329 239 61 95 chr12 77819783 77819806 -43437724 + YREP_Mm Unknown Unknown 153 254 -1558 7 1178 638 226 14 68 chr12 77819806 77819884 -43437646 - ID_B1 SINE B4 -1 223 147 7 1178 2837 119 27 0 chr12 77819884 77820294 -43437236 + MTC LTR MaLR 1 421 0 7 1178 329 239 61 95 chr12 77820294 77820340 -43437190 + YREP_Mm Unknown Unknown 255 295 -1517 7 1178 638 226 14 68 chr12 77820340 77820362 -43437168 - ID_B1 SINE B4 -78 146 85 7 1178 949 100 31 0 chr12 77821121 77821251 -43436279 + B1_Mus1 SINE Alu 5 138 -10 7 1178 353 39 20 0 chr12 77821251 77821302 -43436228 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 7 1178 234 154 0 25 chr12 77821594 77821634 -43435896 - RLTR13D1 LTR ERVK -438 368 330 7 1178 362 338 82 13 chr12 77821839 77821998 -43435532 + MER5B DNA MER1_type 3 172 -6 7 1178 815 159 45 0 chr12 77822036 77822168 -43435362 + B1_Mus1 SINE Alu 4 141 -7 7 1178 343 247 155 0 chr12 77823314 77823411 -43434119 + PB1D7 SINE Alu 2 113 -7 7 1178 201 39 0 0 chr12 77823745 77823771 -43433759 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 7 1178 399 277 21 0 chr12 77823774 77823868 -43433662 - PB1D10 SINE Alu -21 96 1 7 1178 741 199 7 27 chr12 77823932 77824082 -43433448 + B1_Mur1 SINE Alu 3 149 0 7 1178 758 230 55 68 chr12 77824114 77824333 -43433197 + B3 SINE B2 1 216 0 7 1178 335 320 25 98 chr12 77824354 77824610 -43432920 + B4A SINE B4 1 239 -53 7 1178 1193 43 0 0 chr12 77824610 77824748 -43432782 + B1_Mus1 SINE Alu 1 138 -10 7 1178 208 0 62 0 chr12 77824748 77824780 -43432750 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1178 335 320 25 98 chr12 77824780 77824837 -43432693 + B4A SINE B4 240 291 -1 7 1178 1513 43 16 21 chr12 77824955 77825145 -43432385 + B2_Mm1t SINE B2 1 189 -4 7 1178 1116 51 0 14 chr12 77825289 77825429 -43432101 + B1_Mus1 SINE Alu 1 138 -10 7 1178 261 0 0 0 chr12 77825429 77825458 -43432072 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1178 922 120 148 18 chr12 77825470 77825639 -43431891 + B2_Mm2 SINE B2 2 192 -3 7 1178 256 295 62 10 chr12 77826113 77826209 -43431321 + MTEb LTR MaLR 279 379 0 7 1178 444 303 107 18 chr12 77826223 77826391 -43431139 + MTEb-int LTR MaLR 19 201 -1379 7 1178 303 50 25 0 chr12 77826416 77826437 -43431093 - ORR1A4 LTR MaLR -2 327 306 7 1178 1899 141 58 26 chr12 77826437 77826780 -43430750 + IAPEY2_LTR LTR ERVK 1 354 -3 7 1178 1761 137 26 66 chr12 77826785 77827089 -43430441 - ORR1A4 LTR MaLR -37 292 1 7 1178 1022 145 0 0 chr12 77827147 77827292 -43430238 + B1_Mus1 SINE Alu 2 146 -2 7 1178 2757 165 31 14 chr12 77827340 77827825 -43429705 - RMER20A LTR ERVK -23 493 1 7 1178 198 0 0 0 chr12 77827975 77827997 -43429533 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 7 1178 337 55 0 0 chr12 77827997 77828052 -43429478 - B2_Mm1t SINE B2 0 193 139 7 1178 2602 222 78 187 chr12 77828078 77828432 -43429098 - RMER1B Other Other -2 1064 683 7 1178 1155 78 0 0 chr12 77828432 77828573 -43428957 + B1_Mus1 SINE Alu 2 142 -6 7 1178 2602 222 78 187 chr12 77828573 77829409 -43428121 - RMER1B Other Other -384 682 4 7 1178 979 136 7 0 chr12 77829445 77829592 -43427938 - B1_Mus1 SINE Alu 0 148 1 7 1178 371 145 0 14 chr12 77829688 77829725 -43427805 + polypyrimidine Low_complexity Low_complexity 34 70 0 7 1178 1137 128 0 0 chr12 77829725 77829905 -43427625 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1178 371 145 0 14 chr12 77829905 77829937 -43427593 + polypyrimidine Low_complexity Low_complexity 2 33 0 7 1178 1071 306 35 14 chr12 77829961 77830243 -43427287 - B4 SINE B4 -4 288 1 7 1178 195 184 0 0 chr12 77830282 77830320 -43427210 + CT-rich Low_complexity Low_complexity 4 41 0 7 1178 1380 66 16 16 chr12 77830652 77830838 -43426692 + B2_Mm2 SINE B2 1 186 -9 7 1178 1226 41 0 0 chr12 77831097 77831242 -43426288 + B1_Mus2 SINE Alu 2 146 -1 7 1178 480 264 177 89 chr12 77831932 77832283 -43425247 - RLTR26 LTR ERVK -228 414 14 7 1178 964 109 23 6 chr12 77832550 77832726 -43424804 + (GGA)n Simple_repeat Simple_repeat 2 180 0 7 1178 306 0 0 0 chr12 77832726 77832760 -43424770 + (GAA)n Simple_repeat Simple_repeat 3 36 0 7 1178 548 266 109 0 chr12 77832998 77833182 -43424348 + RCHARR1 DNA MER1_type 3 206 -768 7 1178 426 244 30 147 chr12 77833222 77833419 -43424111 + RCHARR1 DNA MER1_type 304 477 -497 7 1178 623 308 6 0 chr12 77833420 77833576 -43423954 + ID_B1 SINE B4 1 157 -67 7 1178 809 196 82 58 chr12 77833576 77833782 -43423748 + B3 SINE B2 3 213 -3 7 1178 1733 256 20 13 chr12 77833888 77834344 -43423186 + RCHARR1 DNA MER1_type 516 974 0 7 1178 256 262 71 0 chr12 77834893 77835006 -43422524 - MIRb SINE MIR -63 205 84 7 1178 29 47 0 0 chr12 77835116 77835159 -43422371 + AT_rich Low_complexity Low_complexity 1 43 0 7 1178 206 176 0 19 chr12 77835169 77835221 -43422309 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1178 225 0 0 0 chr12 77835259 77835284 -43422246 + (TTG)n Simple_repeat Simple_repeat 2 26 0 7 1178 754 171 8 0 chr12 77835314 77835443 -43422087 - B3 SINE B2 -86 130 1 7 1178 310 230 47 37 chr12 77835589 77835720 -43421810 - MLT1A1 LTR MaLR -4 463 313 7 1178 1123 83 14 0 chr12 77835886 77836031 -43421499 + B1_Mus1 SINE Alu 1 147 -1 8 1178 646 191 127 38 chr12 77836066 77836224 -43421306 + B2_Mm2 SINE B2 4 175 -20 8 1178 501 185 154 0 chr12 77836615 77836745 -43420785 - B2_Mm2 SINE B2 -19 176 27 8 1178 1704 129 272 49 chr12 77836764 77837212 -43420318 - RLTR6_Mm LTR ERV1 -70 584 37 8 1178 65426 33 22 0 chr12 77837325 77844951 -43412579 - RLTR6-int LTR ERV1 0 7778 1 8 1178 1754 125 269 49 chr12 77844951 77845404 -43412126 - RLTR6_Mm LTR ERV1 -65 589 37 8 1178 28 29 0 0 chr12 77845551 77845586 -43411944 + AT_rich Low_complexity Low_complexity 1 35 0 8 1178 3321 8 0 5 chr12 77845602 77845971 -43411559 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1178 21545 38 42 4 chr12 77845971 77848542 -43408988 + IAPEz-int LTR ERVK 8 2674 -3807 8 1178 9216 26 2 5 chr12 77848517 77849563 -43407967 + IAPEz-int LTR ERVK 5400 6442 -39 8 1178 930 231 31 126 chr12 77849563 77849602 -43407928 + ORR1C1 LTR MaLR 63 99 -285 8 1178 3321 8 0 5 chr12 77849602 77849971 -43407559 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1178 1005 195 15 62 chr12 77849971 77850287 -43407243 + ORR1C1 LTR MaLR 100 384 0 8 1178 599 179 103 82 chr12 77850928 77851074 -43406456 - B1_Mur4 SINE Alu 0 150 2 8 1178 604 191 92 0 chr12 77851261 77851392 -43406138 + B3A SINE B2 1 143 -55 8 1178 838 182 0 7 chr12 77852598 77852747 -43404783 + B1_Mur4 SINE Alu 3 150 0 8 1178 302 0 26 0 chr12 77852763 77852801 -43404729 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 8 1178 473 248 105 0 chr12 77852801 77852934 -43404596 + B1F SINE Alu 2 148 -1 8 1178 462 18 0 0 chr12 77853724 77853779 -43403751 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1178 623 269 90 20 chr12 77854129 77854330 -43403200 - ID_B1 SINE B4 -8 216 2 8 1178 541 183 175 7 chr12 77854375 77854518 -43403012 - B3 SINE B2 -46 170 4 8 1178 183 309 0 67 chr12 77854630 77854734 -43402796 + L2c LINE L2 3287 3383 -4 8 1178 291 302 34 90 chr12 77854789 77854863 -43402667 - RLTR25B LTR ERVK -420 608 540 8 1178 297 109 0 0 chr12 77854863 77854909 -43402621 + (TTA)n Simple_repeat Simple_repeat 3 48 0 8 1178 291 302 34 90 chr12 77854909 77855012 -43402518 - RLTR25B LTR ERVK -489 539 442 8 1178 684 206 0 0 chr12 77854910 77855036 -43402494 - B1_Mus1 SINE Alu -6 142 17 8 1178 261 314 53 87 chr12 77855012 77855059 -43402471 - B4 SINE B4 -71 221 77 8 1178 379 52 17 17 chr12 77855059 77855118 -43402412 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 8 1178 1132 75 7 0 chr12 77855126 77855272 -43402258 - B1_Mus2 SINE Alu 0 147 1 8 1178 2717 186 73 44 chr12 77855310 77855923 -43401607 + MYSERV16_I-int LTR ERVK 340 970 -1356 8 1178 1274 40 0 0 chr12 77855928 77856076 -43401454 - B1_Mus1 SINE Alu 0 148 1 8 1178 3139 100 40 4 chr12 77856076 77856576 -43400954 + MYSERV16_I-int LTR ERVK 1077 1594 -732 8 147 4565 8 0 0 chr12 77856577 77857070 -43400460 - MT2_Mm LTR ERVL 0 493 1 8 1179 321 0 0 0 chr12 77857070 77857108 -43400422 - MERVL-int LTR ERVL 0 5485 5448 8 1179 331 191 46 35 chr12 77857108 77857195 -43400335 - ORR1A3-int LTR MaLR -1323 640 553 8 1179 48594 14 6 0 chr12 77857195 77862521 -43395009 - MERVL-int LTR ERVL -125 5360 1 8 1179 4565 8 0 0 chr12 77862521 77863014 -43394516 - MT2_Mm LTR ERVL 0 493 1 8 1179 1823 211 39 83 chr12 77863018 77863818 -43393712 + MYSERV16_I-int LTR ERVK 1741 2053 -273 8 1179 2414 133 125 16 chr12 77863818 77864223 -43393307 + RLTR20A LTR ERVK 1 442 -99 8 1179 366 23 0 0 chr12 77864223 77864266 -43393264 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1179 2414 133 125 16 chr12 77864266 77864348 -43393182 + RLTR20A LTR ERVK 443 541 0 8 1179 1985 142 60 28 chr12 77864425 77864822 -43392708 - RMER17C LTR ERVK 0 410 1 8 1179 343 220 68 29 chr12 77864855 77864958 -43392572 - L1_Rod LINE L1 -11 5836 5730 8 1179 651 165 16 8 chr12 77864960 77865088 -43392442 - B1_Mur4 SINE Alu -21 129 1 8 1179 254 284 57 57 chr12 77864980 77865103 -43392427 - B4 SINE B4 -95 197 75 8 1179 1532 296 52 52 chr12 77865109 77865798 -43391732 - L1_Mur3 LINE L1 -141 5739 5048 8 1179 753 170 309 0 chr12 77865798 77865963 -43391567 - B3 SINE B2 0 216 1 8 1179 1532 296 52 52 chr12 77865963 77866099 -43391431 - L1_Mur3 LINE L1 -833 5047 4914 8 1179 836 245 28 19 chr12 77866951 77867167 -43390363 - ID_B1 SINE B4 -6 218 1 8 1179 202 246 33 0 chr12 77867257 77867318 -43390212 + CT-rich Low_complexity Low_complexity 3 65 0 8 1179 837 152 0 7 chr12 77867765 77867904 -43389626 + B1_Mus1 SINE Alu 9 146 -2 8 1179 1226 51 0 0 chr12 77868195 77868352 -43389178 + B2_Mm2 SINE B2 2 158 -37 8 1179 484 240 136 0 chr12 77868410 77868564 -43388966 + MER20 DNA MER1_type 43 217 -2 8 1179 492 246 107 8 chr12 77868793 77868924 -43388606 + B3 SINE B2 33 176 -40 8 1179 192 111 0 0 chr12 77868985 77869021 -43388509 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1179 1569 38 5 5 chr12 77869105 77869291 -43388239 - B2_Mm1a SINE B2 -6 187 2 8 1179 370 76 0 120 chr12 77869302 77869377 -43388153 - L1_Mus2 LINE L1 0 6566 6501 8 1179 648 247 46 6 chr12 77869484 77869659 -43387871 + B3A SINE B2 1 182 -16 8 1179 382 232 62 10 chr12 77869787 77869883 -43387647 + RSINE1 SINE B4 31 131 -34 8 1179 1073 109 0 0 chr12 77870022 77870169 -43387361 - B1_Mus2 SINE Alu 0 147 1 8 1179 242 56 0 27 chr12 77870564 77870601 -43386929 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 8 1179 735 143 45 0 chr12 77870609 77870742 -43386788 + B1_Mus2 SINE Alu 9 147 0 8 1179 287 194 16 31 chr12 77870758 77870822 -43386708 - B1_Mm SINE Alu -13 134 72 8 1179 427 229 344 0 chr12 77871019 77871176 -43386354 - ID_B1 SINE B4 -13 211 1 8 1179 198 0 0 0 chr12 77871315 77871337 -43386193 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 8 1179 592 176 168 0 chr12 77871394 77871519 -43386011 - B1_Mus2 SINE Alu 0 147 2 8 1179 285 109 0 0 chr12 77871668 77871714 -43385816 + B1F SINE Alu 101 146 -3 8 1179 276 276 85 42 chr12 77871744 77871933 -43385597 + L1ME2 LINE L1 5375 5571 -593 8 1179 514 263 94 20 chr12 77871940 77872122 -43385408 + B3A SINE B2 8 202 -14 8 1179 809 261 191 25 chr12 77872141 77872608 -43384922 + L1ME2 LINE L1 5565 6108 -336 8 1179 496 190 158 27 chr12 77872612 77872925 -43384605 - MTD LTR MaLR 0 419 1 8 1179 393 225 0 43 chr12 77873335 77873428 -43384102 + RSINE1 SINE B4 3 91 -74 8 1179 22 56 0 0 chr12 77873454 77873490 -43384040 + AT_rich Low_complexity Low_complexity 1 36 0 8 1179 330 200 15 0 chr12 77873953 77874018 -43383512 - ID4 SINE ID -16 67 2 8 1179 312 217 0 32 chr12 77874583 77874645 -43382885 - B1F2 SINE Alu -88 61 2 8 1179 270 106 0 0 chr12 77874704 77874751 -43382779 + (T)n Simple_repeat Simple_repeat 1 47 0 8 1179 686 236 28 0 chr12 77874751 77874895 -43382635 - B1F SINE Alu 0 149 2 8 1179 236 258 30 52 chr12 77875298 77875433 -43382097 + (TATATG)n Simple_repeat Simple_repeat 6 137 0 8 1179 360 0 0 0 chr12 77875682 77875722 -43381808 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 8 1179 229 263 152 0 chr12 77875806 77875924 -43381606 + MIR SINE MIR 100 235 -27 8 1179 265 267 9 68 chr12 77876181 77876288 -43381242 + B1F SINE Alu 29 149 0 8 1179 774 226 16 53 chr12 77876970 77877157 -43380373 - B3A SINE B2 -16 182 3 8 1179 256 219 47 0 chr12 77877260 77877324 -43380206 + B1_Mur4 SINE Alu 7 73 -77 8 1179 2699 28 3 18 chr12 77877507 77877840 -43379690 + L1Md_F2 LINE L1 6255 6582 0 8 1179 1555 58 5 0 chr12 77878487 77878678 -43378852 + B2_Mm1a SINE B2 2 193 0 8 1179 453 140 140 0 chr12 77878821 77878914 -43378616 - B3 SINE B2 -110 106 1 8 1179 812 194 13 118 chr12 77878920 77879148 -43378382 - B3 SINE B2 -4 212 9 8 1179 21 36 0 0 chr12 77879980 77880008 -43377522 + AT_rich Low_complexity Low_complexity 1 28 0 8 1179 30 0 0 0 chr12 77880080 77880110 -43377420 + AT_rich Low_complexity Low_complexity 1 30 0 8 1179 1068 73 48 12 chr12 77880482 77880496 -43377034 - B2_Mm2 SINE B2 -23 172 159 8 1179 186 43 0 0 chr12 77880496 77880519 -43377011 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1179 1068 73 48 12 chr12 77880519 77880670 -43376860 - B2_Mm2 SINE B2 -37 158 1 8 1179 346 214 23 23 chr12 77881312 77881398 -43376132 - MamRep1161 DNA TcMar -835 122 37 8 1179 259 245 27 54 chr12 77881664 77881776 -43375754 - BC1_Mm scRNA scRNA -42 110 2 8 1179 273 258 0 43 chr12 77881709 77881778 -43375752 - B4 SINE B4 -222 70 5 8 1179 210 262 82 0 chr12 77881832 77881893 -43375637 - PB1D10 SINE Alu -51 66 1 8 1179 433 40 132 0 chr12 77882209 77882360 -43375170 + (CCTG)n Simple_repeat Simple_repeat 1 171 0 8 1179 26 0 0 0 chr12 77882559 77882585 -43374945 + AT_rich Low_complexity Low_complexity 1 26 0 8 1179 474 18 0 0 chr12 77882943 77882998 -43374532 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1179 567 0 0 0 chr12 77882998 77883060 -43374470 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1179 382 271 48 56 chr12 77883085 77883210 -43374320 - RSINE1 SINE B4 -35 130 7 8 1179 225 0 0 0 chr12 77883216 77883241 -43374289 + (TTCTG)n Simple_repeat Simple_repeat 1 25 0 8 1179 249 95 31 16 chr12 77883241 77883305 -43374225 + (TTTTTG)n Simple_repeat Simple_repeat 1 65 0 8 1179 508 262 153 59 chr12 77883305 77883508 -43374022 - ID_B1 SINE B4 -1 223 2 8 1179 1687 21 0 0 chr12 77883948 77884134 -43373396 + B2_Mm1a SINE B2 2 187 -6 8 1179 346 230 264 24 chr12 77884342 77884473 -43373057 + L1MC3 LINE L1 6702 6877 -908 8 1179 1437 135 18 0 chr12 77884473 77884695 -43372835 - URR1A DNA MER1_type 0 226 1 8 1179 346 230 264 24 chr12 77884695 77884817 -43372713 + L1MC3 LINE L1 6878 7016 -769 8 1179 318 50 0 0 chr12 77884826 77884866 -43372664 + (TGGA)n Simple_repeat Simple_repeat 2 41 0 8 1179 478 268 214 13 chr12 77884913 77885307 -43372223 + L1MC3 LINE L1 7132 7603 -182 8 1179 297 175 93 46 chr12 77886673 77886781 -43370749 - Lx7 LINE L1 -21 7675 7563 8 1179 724 272 64 4 chr12 77886782 77887015 -43370515 - Lx7 LINE L1 -332 7364 7118 8 1179 492 18 0 0 chr12 77887035 77887092 -43370438 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1179 694 216 0 26 chr12 77887092 77887234 -43370296 - B1_Mur1 SINE Alu -9 140 2 8 1179 990 140 0 0 chr12 77887254 77887397 -43370133 - B1_Mus2 SINE Alu 0 147 5 8 1179 819 196 47 37 chr12 77887409 77887600 -43369930 - B3A SINE B2 -1 197 5 8 1179 1709 198 64 23 chr12 77887719 77887793 -43369737 - Lx9 LINE L1 -48 7596 7514 8 1179 504 0 0 0 chr12 77887793 77887849 -43369681 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1179 1709 198 64 23 chr12 77887849 77887865 -43369665 - Lx9 LINE L1 -131 7513 7492 8 1179 1199 68 0 0 chr12 77887865 77888011 -43369519 - B1_Mus1 SINE Alu -1 147 2 9 1179 1709 198 64 23 chr12 77888011 77888359 -43369171 - Lx9 LINE L1 -153 7491 7140 8 1179 1309 73 62 0 chr12 77888359 77888536 -43368994 - B2_Mm2 SINE B2 -7 188 1 9 1179 23 0 0 0 chr12 77888536 77888559 -43368971 + AT_rich Low_complexity Low_complexity 1 23 0 9 1179 1055 129 42 21 chr12 77888571 77888761 -43368769 + B2_Mm2 SINE B2 1 194 -1 9 1179 287 49 0 24 chr12 77888761 77888803 -43368727 + (GGA)n Simple_repeat Simple_repeat 2 42 0 9 1179 183 80 0 0 chr12 77888801 77888826 -43368704 + (GA)n Simple_repeat Simple_repeat 1 25 0 9 1179 263 87 0 42 chr12 77888822 77888870 -43368660 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 9 1179 1573 188 191 85 chr12 77888956 77889009 -43368521 - MT2A LTR ERVL 0 533 472 9 1179 180 0 0 0 chr12 77889009 77889029 -43368501 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 9 1179 1573 188 191 85 chr12 77889029 77889457 -43368073 - MT2A LTR ERVL -62 471 1 9 1179 583 178 59 7 chr12 77889457 77889593 -43367937 - MERVL_2A-int LTR ERVL 0 5761 5619 9 1179 5135 144 42 61 chr12 77889591 77890064 -43367466 - MERVL_2A-int LTR ERVL -71 5690 5196 9 1179 1246 170 37 0 chr12 77890064 77890282 -43367248 - URR1A DNA MER1_type 0 226 1 9 1179 5135 144 42 61 chr12 77890282 77890818 -43366712 - MERVL_2A-int LTR ERVL -566 5195 4701 9 1179 363 276 120 8 chr12 77890819 77890936 -43366594 - MT2A LTR ERVL -8 525 396 9 1179 399 310 68 34 chr12 77892518 77892635 -43364895 + RSINE1 SINE B4 44 164 -1 9 1179 282 191 396 9 chr12 77893164 77893275 -43364255 + RSINE1 SINE B4 2 155 -10 9 1179 411 21 0 0 chr12 77894140 77894188 -43363342 + (TC)n Simple_repeat Simple_repeat 2 49 0 9 1179 621 264 8 0 chr12 77894246 77894367 -43363163 - RSINE1 SINE B4 -38 127 6 9 1179 370 279 23 0 chr12 77894421 77894507 -43363023 + RSINE1 SINE B4 76 163 -2 9 1179 192 77 0 0 chr12 77894511 77894537 -43362993 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 1179 234 0 0 0 chr12 77894829 77894855 -43362675 + (CAGC)n Simple_repeat Simple_repeat 1 26 0 9 1179 234 287 86 63 chr12 77895355 77895530 -43362000 - MIR SINE MIR -55 207 29 9 1179 776 270 90 5 chr12 77895549 77895750 -43361780 - ID_B1 SINE B4 -2 222 5 9 1179 220 204 109 18 chr12 77895753 77895808 -43361722 - PB1D7 SINE Alu -5 115 56 9 1179 230 281 78 50 chr12 77898234 77898377 -43359153 + MIRc SINE MIR 34 179 -89 9 1179 243 0 0 0 chr12 77899856 77899883 -43357647 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1179 231 258 88 22 chr12 77901474 77901565 -43355965 - LTR81B LTR ERV1? -914 479 383 9 1179 243 0 0 0 chr12 77901819 77901846 -43355684 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1179 467 147 10 0 chr12 77901887 77901989 -43355541 + (CA)n Simple_repeat Simple_repeat 1 103 0 9 1179 450 345 11 22 chr12 77902078 77902259 -43355271 + MIRb SINE MIR 74 252 -16 9 1179 556 240 90 60 chr12 77903088 77903314 -43354216 + MER44D DNA MER2_type 1 153 -552 9 1179 1097 82 0 0 chr12 77903314 77903449 -43354081 + B1_Mus1 SINE Alu 1 135 -13 9 1179 228 35 0 0 chr12 77903451 77903480 -43354050 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1179 302 277 106 96 chr12 77903480 77903547 -43353983 + MER44D DNA MER2_type 613 672 -33 9 1179 921 72 0 8 chr12 77905730 77905856 -43351674 + B1_Mus1 SINE Alu 1 125 -23 9 1179 187 336 131 62 chr12 77907009 77907139 -43350391 - MIRb SINE MIR -115 153 15 9 1179 1089 243 144 26 chr12 77907207 77907520 -43350010 + MTE2b LTR MaLR 6 355 -24 9 1179 315 0 0 0 chr12 77907527 77907562 -43349968 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 1179 324 20 0 20 chr12 77907965 77908016 -43349514 + B2_Mm2 SINE B2 137 186 -9 9 1179 287 0 53 0 chr12 77908279 77908317 -43349213 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 9 1179 440 322 56 17 chr12 77908828 77909008 -43348522 + MER5A DNA MER1_type 1 187 -2 9 1179 182 216 27 0 chr12 77909082 77909119 -43348411 + MER5B DNA MER1_type 12 49 -129 9 1179 1228 113 160 0 chr12 77909283 77909477 -43348053 - URR1B DNA MER1_type 0 225 1 9 1179 302 312 123 18 chr12 77909540 77909654 -43347876 + MIRm SINE MIR 36 161 -115 9 1179 492 163 0 30 chr12 77909728 77909829 -43347701 + ORR1D2 LTR MaLR 4 101 -273 9 1179 979 61 6 114 chr12 77909829 77909863 -43347667 + B1_Mus1 SINE Alu 1 17 -131 9 1179 3504 10 0 0 chr12 77909863 77910249 -43347281 - L1Md_A LINE L1 0 6582 6197 9 1179 979 61 6 114 chr12 77910249 77910380 -43347150 + B1_Mus1 SINE Alu 18 148 0 9 1179 1006 252 108 19 chr12 77910377 77910458 -43347072 + ORR1D2 LTR MaLR 88 177 -193 9 1179 261 0 0 0 chr12 77910458 77910487 -43347043 + (TC)n Simple_repeat Simple_repeat 1 29 0 9 1179 1006 252 108 19 chr12 77910487 77910664 -43346866 + ORR1D2 LTR MaLR 178 369 -1 9 1179 342 0 0 0 chr12 77910874 77910912 -43346618 + (TAA)n Simple_repeat Simple_repeat 1 38 0 9 1179 308 272 69 94 chr12 77911244 77911447 -43346083 + ID_B1 SINE B4 6 203 -21 9 1179 840 63 167 0 chr12 77912450 77912576 -43344954 + B1_Mus1 SINE Alu 2 148 0 9 1179 847 106 49 0 chr12 77912600 77912723 -43344807 + B1_Mur4 SINE Alu 12 140 -10 9 1179 894 19 0 0 chr12 77912723 77912827 -43344703 + (CAAAG)n Simple_repeat Simple_repeat 1 104 0 9 1179 980 49 8 0 chr12 77912842 77912965 -43344565 + B1_Mm SINE Alu 24 147 0 9 1179 285 127 38 0 chr12 77912967 77913046 -43344484 + A-rich Low_complexity Low_complexity 3 84 0 9 1179 356 368 64 11 chr12 77913071 77913258 -43344272 + MIRb SINE MIR 64 260 -8 9 1179 1588 251 56 48 chr12 77913318 77913732 -43343798 + MTD LTR MaLR 3 419 0 9 1179 923 124 23 0 chr12 77914362 77914491 -43343039 + B1_Mus1 SINE Alu 5 136 -12 9 1179 576 0 0 0 chr12 77914491 77914555 -43342975 + (CAAAA)n Simple_repeat Simple_repeat 3 66 0 9 1179 498 33 0 0 chr12 77915193 77915253 -43342277 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 1179 251 272 167 36 chr12 77915272 77915356 -43342174 - RSINE1 SINE B4 -67 98 4 9 1179 279 363 85 41 chr12 77915983 77916302 -43341228 - L2b LINE L2 0 3375 3043 9 1179 450 0 0 0 chr12 77916431 77916481 -43341049 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1179 387 105 0 0 chr12 77916942 77916999 -43340531 + (TGAG)n Simple_repeat Simple_repeat 3 59 0 9 1179 366 61 0 0 chr12 77917707 77917756 -43339774 + (GGA)n Simple_repeat Simple_repeat 1 49 0 9 1179 180 0 0 0 chr12 77918113 77918133 -43339397 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1179 923 209 63 109 chr12 77918272 77918557 -43338973 + B4 SINE B4 1 272 -20 9 1179 215 346 37 9 chr12 77918726 77918834 -43338696 - MIR SINE MIR -42 220 110 9 1179 180 372 16 47 chr12 77920803 77920930 -43336600 - MIR3 SINE MIR -71 137 15 9 1179 180 77 0 0 chr12 77923438 77923464 -43334066 + (CTCG)n Simple_repeat Simple_repeat 3 28 0 9 1179 22 0 0 0 chr12 77923621 77923643 -43333887 + GC_rich Low_complexity Low_complexity 1 22 0 9 1179 655 247 119 31 chr12 77924621 77924780 -43332750 + B3 SINE B2 10 182 -34 9 1179 243 0 0 0 chr12 77924809 77924836 -43332694 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1179 251 297 199 20 chr12 77924887 77925083 -43332447 + MIR SINE MIR 28 258 -4 9 1179 710 257 0 63 chr12 77925573 77925764 -43331766 + B3A SINE B2 4 182 -16 9 1179 451 128 11 11 chr12 77925770 77925857 -43331673 + GA-rich Low_complexity Low_complexity 2 88 0 9 1179 401 238 75 19 chr12 77925866 77925973 -43331557 + PB1D10 SINE Alu 5 117 0 9 1179 350 243 117 36 chr12 77926796 77926907 -43330623 - B1F SINE Alu -13 136 17 9 1179 505 282 70 0 chr12 77927130 77927272 -43330258 - MLT1B LTR MaLR -91 299 148 9 1179 409 268 69 35 chr12 77927273 77927389 -43330141 + RSINE1 SINE B4 2 121 -44 9 1179 620 219 43 14 chr12 77927484 77927623 -43329907 - B1_Mur1 SINE Alu 0 149 7 9 1179 1248 41 0 7 chr12 77928726 77928874 -43328656 - B1_Mus2 SINE Alu 0 147 1 9 1179 1284 81 0 65 chr12 77929001 77929200 -43328330 + B2_Mm2 SINE B2 2 187 -8 9 1179 742 169 80 7 chr12 77929296 77929433 -43328097 + B1_Mur1 SINE Alu 1 147 -2 9 1179 455 331 45 7 chr12 77929548 77929703 -43327827 - MLT1J1 LTR MaLR -37 407 247 9 1179 229 291 0 0 chr12 77930141 77930196 -43327334 - MLT1J1 LTR MaLR -252 196 142 9 1179 185 281 113 94 chr12 77930289 77930395 -43327135 - MER5A DNA MER1_type -22 167 60 9 1179 21 0 0 0 chr12 77930418 77930439 -43327091 + AT_rich Low_complexity Low_complexity 1 21 0 9 1179 1760 164 172 19 chr12 77930467 77930572 -43326958 + RLTR23 LTR ERV1 1 166 -264 9 1179 366 80 0 0 chr12 77930572 77930622 -43326908 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 9 1179 1760 164 172 19 chr12 77930622 77930889 -43326641 + RLTR23 LTR ERV1 167 429 -1 9 1179 253 300 19 29 chr12 77930928 77931031 -43326499 + RLTR14-int LTR ERV1 1743 1844 -3473 9 1179 384 312 75 56 chr12 77931361 77931629 -43325901 + RMER2 LTR ERV1 295 567 0 9 1179 1433 70 11 0 chr12 77931755 77931942 -43325588 - B2_Mm1a SINE B2 -4 189 1 9 1179 257 153 19 67 chr12 77932016 77932121 -43325409 + CT-rich Low_complexity Low_complexity 3 102 0 9 1179 336 140 167 26 chr12 77932520 77932625 -43324905 - B2_Mm2 SINE B2 -7 188 47 9 1179 1236 107 11 0 chr12 77932657 77932834 -43324696 - B2_Mm1t SINE B2 -14 179 1 9 1179 214 300 133 0 chr12 77932991 77933051 -43324479 - L2 LINE L2 -1144 2275 2208 9 1179 595 278 12 24 chr12 77933085 77933251 -43324279 + RSINE1 SINE B4 2 165 0 9 1179 357 24 0 0 chr12 77933272 77933314 -43324216 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1179 427 268 50 57 chr12 77933341 77933501 -43324029 + RSINE1 SINE B4 6 165 0 9 1179 321 135 0 0 chr12 77933519 77933571 -43323959 + (CAT)n Simple_repeat Simple_repeat 2 53 0 9 1179 297 291 68 0 chr12 77933588 77933691 -43323839 - L2 LINE L2 -1304 2115 2006 9 1179 278 362 65 32 chr12 77934443 77934597 -43322933 + L2b LINE L2 3221 3382 -44 9 1179 324 0 0 0 chr12 77934599 77934635 -43322895 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1179 849 168 42 0 chr12 77935003 77935146 -43322384 + B1_Mur4 SINE Alu 1 149 -1 9 1179 946 54 131 0 chr12 77935151 77935281 -43322249 + B1_Mus2 SINE Alu 1 147 0 9 1179 1483 72 0 15 chr12 77935307 77935505 -43322025 + B2_Mm2 SINE B2 1 195 0 1 1179 1267 48 0 0 chr12 77935506 77935653 -43321877 + B1_Mm SINE Alu 1 147 0 1 1179 201 167 0 0 chr12 77935653 77935689 -43321841 + A-rich Low_complexity Low_complexity 1 36 0 1 1179 247 231 119 30 chr12 77935895 77935962 -43321568 - ID4 SINE ID -10 73 1 1 1179 425 337 78 15 chr12 77936098 77936369 -43321161 - B4A SINE B4 -4 288 1 1 1179 435 38 0 0 chr12 77936453 77936506 -43321024 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1179 795 240 16 48 chr12 77936516 77936704 -43320826 - B3A SINE B2 -16 182 1 1 1179 756 236 22 38 chr12 77936724 77936909 -43320621 - B3A SINE B2 -16 182 1 1 1179 423 0 0 0 chr12 77937305 77937352 -43320178 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1179 291 128 44 44 chr12 77937352 77937442 -43320088 + Lx7 LINE L1 7602 7691 -5 1 1179 711 239 117 0 chr12 77937484 77937664 -43319866 - B3 SINE B2 -14 202 2 1 1179 282 328 77 26 chr12 77937666 77937860 -43319670 + L2a LINE L2 3213 3416 -10 1 1179 207 0 0 0 chr12 77938120 77938143 -43319387 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1179 405 241 0 12 chr12 77939663 77939747 -43317783 - RSINE1 SINE B4 -80 85 3 1 1179 836 168 28 0 chr12 77939999 77940142 -43317388 - B1_Mur4 SINE Alu -1 149 3 1 1179 1040 121 117 66 chr12 77940261 77940474 -43317056 - URR1B DNA MER1_type -1 224 1 1 1179 1228 92 0 6 chr12 77940862 77941027 -43316503 - B2_Mm2 SINE B2 -30 165 2 1 1179 2044 152 80 63 chr12 77941079 77941493 -43316037 + MTC LTR MaLR 1 421 0 1 1179 736 265 69 15 chr12 77941966 77942169 -43315361 + B3 SINE B2 3 216 0 1 1179 244 231 45 15 chr12 77942323 77942389 -43315141 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 1 1179 1221 74 0 0 chr12 77942657 77942805 -43314725 + B1_Mus1 SINE Alu 1 148 0 1 1179 255 125 0 0 chr12 77942805 77942845 -43314685 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1179 275 303 171 8 chr12 77942920 77943043 -43314487 + LTR33 LTR ERVL 64 206 -309 1 1179 475 205 164 8 chr12 77943241 77943369 -43314161 + B3A SINE B2 2 149 -49 1 1179 534 122 0 0 chr12 77943370 77943477 -43314053 + (CA)n Simple_repeat Simple_repeat 1 107 0 1 1179 270 344 35 41 chr12 77943477 77943647 -43313883 - L2 LINE L2 -654 2765 2597 1 1179 783 114 136 0 chr12 77943886 77944018 -43313512 - B1_Mur4 SINE Alu 0 150 1 1 1179 458 237 17 17 chr12 77944128 77944244 -43313286 + PB1D10 SINE Alu 1 116 -1 1 1179 231 304 131 51 chr12 77944372 77944446 -43313084 - Kanga2_a DNA Tc2 -100 788 722 1 1179 403 224 13 0 chr12 77944446 77944522 -43313008 + ID4 SINE ID 1 77 -6 1 1179 231 304 131 51 chr12 77944522 77944683 -43312847 - Kanga2_a DNA Tc2 -167 721 534 1 1179 3429 40 0 2 chr12 77944695 77945092 -43312438 + MTA_Mm LTR MaLR 1 396 0 1 1179 674 89 116 0 chr12 77945114 77945226 -43312304 + B1_Mur3 SINE Alu 25 149 0 1 1179 495 216 20 88 chr12 77945291 77945438 -43312092 + B1F SINE Alu 4 140 -9 1 1179 463 281 0 140 chr12 77945464 77945642 -43311888 + RSINE1 SINE B4 13 165 0 1 1179 230 250 93 52 chr12 77945671 77945768 -43311762 - LTR48 LTR ERV1 -10 777 677 1 1179 247 217 33 0 chr12 77946056 77946116 -43311414 - MER34A LTR ERV1 -480 91 30 1 1179 534 189 333 12 chr12 77946391 77946562 -43310968 + B4A SINE B4 36 261 -31 1 1179 306 258 34 0 chr12 77946591 77946680 -43310850 - MER5A DNA MER1_type -10 179 88 1 1179 252 288 26 40 chr12 77946934 77947004 -43310526 - B4A SINE B4 0 292 224 1 1179 2066 140 62 20 chr12 77947004 77947198 -43310332 - ORR1C2 LTR MaLR 0 384 170 1 1179 357 24 0 0 chr12 77947198 77947240 -43310290 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1179 2066 140 62 20 chr12 77947240 77947402 -43310128 - ORR1C2 LTR MaLR -215 169 13 1 1179 1198 54 7 0 chr12 77947432 77947579 -43309951 - B1_Mus1 SINE Alu 0 148 1 1 1179 1152 92 63 0 chr12 77947581 77947755 -43309775 - B2_Mm2 SINE B2 -10 185 1 1 1179 252 0 0 0 chr12 77947841 77947869 -43309661 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1179 453 290 81 0 chr12 77947874 77947998 -43309532 - B4A SINE B4 -156 136 3 1 1179 668 168 143 8 chr12 77948018 77948144 -43309386 - B1_Mur2 SINE Alu 0 149 7 1 1179 261 232 116 0 chr12 77948251 77948346 -43309184 - L1ME2z LINE L1 -13 6431 6326 1 1179 212 329 62 12 chr12 77948373 77948453 -43309077 - PB1D10 SINE Alu -9 108 25 1 1179 371 283 9 9 chr12 77948553 77948667 -43308863 - PB1D10 SINE Alu 0 117 4 1 1179 525 289 89 67 chr12 77948684 77948966 -43308564 - L1ME2z LINE L1 -178 6266 5979 1 1179 268 256 47 113 chr12 77948969 77949119 -43308411 - RLTR25B LTR ERVK -445 583 444 1 1179 718 188 8 8 chr12 77949012 77949146 -43308384 - B1_Mur4 SINE Alu 0 150 17 1 1179 340 55 18 18 chr12 77949147 77949203 -43308327 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1179 688 258 47 93 chr12 77949225 77949526 -43308004 - B4 SINE B4 -2 290 17 1 1179 257 258 93 82 chr12 77949522 77949537 -43307993 - ID_B1 SINE B4 -11 213 116 1 1179 316 241 12 37 chr12 77949537 77949619 -43307911 - PB1D10 SINE Alu -3 114 35 1 1179 940 116 0 18 chr12 77949646 77949801 -43307729 - B1_Mur2 SINE Alu 0 149 1 1 1179 1193 69 0 0 chr12 77949885 77950030 -43307500 - B1_Mm SINE Alu 0 147 3 1 1179 243 289 94 26 chr12 77950032 77950149 -43307381 - LTR37A LTR ERV1 -67 359 235 1 1179 225 0 0 0 chr12 77950599 77950624 -43306906 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1179 1281 86 23 0 chr12 77950990 77951164 -43306366 - B2_Mm1t SINE B2 -14 179 2 1 1179 790 119 52 7 chr12 77951212 77951347 -43306183 - B1_Mur4 SINE Alu -9 141 1 1 1179 592 237 79 0 chr12 77951553 77951692 -43305838 - RSINE1 SINE B4 -12 153 4 1 1179 251 243 120 13 chr12 77952313 77952388 -43305142 - ID4_ SINE ID 0 83 1 1 1179 485 299 82 6 chr12 77952567 77952725 -43304805 - B4A SINE B4 -117 175 6 1 1179 210 71 0 0 chr12 77952746 77952774 -43304756 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1 1179 992 148 0 7 chr12 77952775 77952925 -43304605 - B1_Mur4 SINE Alu 0 150 2 1 1179 24 0 0 0 chr12 77952925 77952949 -43304581 + AT_rich Low_complexity Low_complexity 1 24 0 1 1179 958 210 49 20 chr12 77952956 77953160 -43304370 - B3 SINE B2 -6 210 1 1 1179 465 215 36 27 chr12 77953184 77953294 -43304236 - B1_Mur1 SINE Alu -1 148 38 1 1179 230 190 98 49 chr12 77953242 77953303 -43304227 - 4.5SRNA scRNA scRNA -6 88 25 1 1179 989 41 8 0 chr12 77953315 77953438 -43304092 + B1_Mus2 SINE Alu 24 147 0 1 1179 385 275 186 0 chr12 77953538 77953705 -43303825 - MER68 LTR ERVL -3 560 363 1 1179 529 224 172 31 chr12 77953792 77953961 -43303569 - B3 SINE B2 -13 180 1 1 1179 444 192 172 0 chr12 77953962 77954061 -43303469 - B1F SINE Alu 0 149 34 1 1179 718 149 7 7 chr12 77954417 77954566 -43302964 + CT-rich Low_complexity Low_complexity 1 149 0 1 1179 727 160 53 8 chr12 77955230 77955362 -43302168 - B1_Mur2 SINE Alu -11 138 1 1 1179 456 19 0 0 chr12 77955378 77955431 -43302099 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1179 707 269 0 0 chr12 77955435 77955595 -43301935 - B3A SINE B2 -38 160 1 1 1179 1337 160 9 0 chr12 77955960 77956173 -43301357 - URR1A DNA MER1_type -11 215 1 1 1179 1675 36 0 0 chr12 77956251 77956444 -43301086 + B2_Mm1a SINE B2 1 193 0 1 1179 589 220 164 20 chr12 77956570 77956765 -43300765 + ID_B1 SINE B4 1 223 -1 1 1179 243 0 0 0 chr12 77956771 77956798 -43300732 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1179 894 230 14 56 chr12 77957089 77957305 -43300225 - B3 SINE B2 -1 215 9 1 1179 375 23 0 0 chr12 77957445 77957489 -43300041 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 1 1179 483 167 0 72 chr12 77957489 77957586 -43299944 - PB1D10 SINE Alu -13 104 15 1 1179 240 59 0 0 chr12 77957660 77957694 -43299836 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1179 940 41 0 8 chr12 77957694 77957817 -43299713 - B1_Mus2 SINE Alu -25 122 1 1 1179 558 178 7 79 chr12 77957698 77957838 -43299692 - ID_B1 SINE B4 -26 198 69 1 1179 207 0 0 0 chr12 77958674 77958697 -43298833 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1179 1083 91 28 0 chr12 77958697 77958840 -43298690 - B1_Mus2 SINE Alu 0 147 1 1 1179 993 116 0 0 chr12 77958896 77959060 -43298470 + (GGGA)n Simple_repeat Simple_repeat 3 166 0 1 1179 308 179 45 0 chr12 77959306 77959373 -43298157 + ID4 SINE ID 4 73 -10 1 1179 1087 216 5 0 chr12 77959427 77959612 -43297918 + B3 SINE B2 1 186 -30 1 1179 2374 126 138 28 chr12 77959734 77960168 -43297362 - RLTR45 LTR ERVK 0 482 1 1 1179 1729 21 0 0 chr12 77961741 77961933 -43295597 - B2_Mm1t SINE B2 0 193 2 1 1179 530 196 28 9 chr12 77962582 77962690 -43294840 + MTD LTR MaLR 1 110 -309 1 1179 195 114 0 0 chr12 77962698 77962733 -43294797 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1179 554 218 18 9 chr12 77962733 77962844 -43294686 - B1_Mus2 SINE Alu -9 138 27 1 1179 1349 159 46 96 chr12 77962837 77963162 -43294368 + MTD LTR MaLR 109 409 -10 1 1179 710 150 9 0 chr12 77963643 77963756 -43293774 - B3A SINE B2 -83 115 2 1 1179 212 238 0 0 chr12 77963874 77963916 -43293614 + C-rich Low_complexity Low_complexity 3 44 0 1 1179 583 200 152 0 chr12 77963917 77964042 -43293488 - B1F1 SINE Alu -5 144 1 1 1179 321 295 98 46 chr12 77965147 77965237 -43292293 - L1MCa LINE L1 -5204 1304 1207 1 1179 917 136 20 13 chr12 77965237 77965386 -43292144 - B1_Mur4 SINE Alu 0 150 1 1 1179 321 295 98 46 chr12 77965386 77965420 -43292110 - L1MCa LINE L1 -5302 1206 1167 1 1179 1134 68 7 7 chr12 77965420 77965567 -43291963 - B1_Mus2 SINE Alu 0 147 1 1 1179 321 295 98 46 chr12 77965567 77965615 -43291915 - L1MCa LINE L1 -5342 1166 1122 1 1179 921 248 25 0 chr12 77965645 77965847 -43291683 - B3 SINE B2 -8 208 2 1 1179 267 286 55 109 chr12 77966638 77966728 -43290802 + ID_B1 SINE B4 121 209 -15 1 1179 324 0 0 0 chr12 77966728 77966764 -43290766 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 1179 267 286 55 109 chr12 77966764 77966783 -43290747 + ID_B1 SINE B4 210 224 0 1 1179 211 280 0 0 chr12 77966918 77966968 -43290562 - RSINE1 SINE B4 -100 65 16 1 1179 220 241 35 92 chr12 77967106 77967193 -43290337 - ID_B1 SINE B4 -62 162 81 1 1179 228 297 105 85 chr12 77967214 77967567 -43289963 + RMER10A LTR ERVL 1 360 -82 1 1179 483 18 0 0 chr12 77967903 77967959 -43289571 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1179 237 254 18 0 chr12 77968405 77968460 -43289070 - L2b LINE L2 -302 3073 3018 1 1179 464 0 18 0 chr12 77968597 77968653 -43288877 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1179 365 262 131 0 chr12 77968877 77968984 -43288546 - MLT1B LTR MaLR -78 312 192 1 1179 236 211 38 19 chr12 77969022 77969075 -43288455 - ID SINE ID -167 57 4 1 1179 533 255 71 42 chr12 77969077 77969245 -43288285 - MLT1B LTR MaLR -217 173 1 1 1179 295 309 69 44 chr12 77969842 77970001 -43287529 - RSINE1 SINE B4 0 165 3 1 1179 244 242 0 70 chr12 77970049 77970120 -43287410 + B4 SINE B4 79 144 -148 1 1179 216 231 0 0 chr12 77970123 77970201 -43287329 + GA-rich Low_complexity Low_complexity 2 79 0 1 1179 240 213 79 32 chr12 77970258 77970321 -43287209 + B4 SINE B4 79 144 -148 1 1179 210 150 0 48 chr12 77970321 77970363 -43287167 + (CAGAGA)n Simple_repeat Simple_repeat 5 44 0 1 1179 550 109 86 38 chr12 77970363 77970468 -43287062 + B1_Mur4 SINE Alu 41 150 0 1 1179 235 288 116 25 chr12 77970503 77970515 -43287015 + B4 SINE B4 84 132 -160 1 1179 390 233 11 22 chr12 77970515 77970607 -43286923 + PB1D10 SINE Alu 12 102 -15 1 1179 235 288 116 25 chr12 77970607 77970624 -43286906 + B4 SINE B4 133 215 -77 1 1179 351 281 68 38 chr12 77971180 77971313 -43286217 - RSINE1 SINE B4 0 165 29 1 1179 264 260 96 0 chr12 77971337 77971410 -43286120 - B1F SINE Alu -69 80 1 1 1179 838 244 109 14 chr12 77971445 77971720 -43285810 - L1MB8 LINE L1 -37 6141 5841 1 1179 414 258 97 15 chr12 77971744 77971878 -43285652 - B1F2 SINE Alu -4 145 1 1 1179 532 227 82 0 chr12 77971920 77972030 -43285500 - PB1D9 SINE Alu 0 120 2 1 1179 542 258 65 43 chr12 77972447 77972585 -43284945 - ID_B1 SINE B4 0 224 84 1 1179 180 0 0 0 chr12 77972922 77972942 -43284588 + (GTTTG)n Simple_repeat Simple_repeat 5 24 0 1 1179 1132 49 0 27 chr12 77972942 77973088 -43284442 - B1_Mus1 SINE Alu -4 144 3 1 1179 220 263 62 62 chr12 77973413 77973494 -43284036 - ID_B1 SINE B4 -64 160 80 1 1179 957 140 0 26 chr12 77974613 77974767 -43282763 + B1_Mur4 SINE Alu 1 150 0 1 1179 262 100 16 16 chr12 77974767 77974828 -43282702 + (CAAAA)n Simple_repeat Simple_repeat 5 65 0 1 1179 214 265 139 56 chr12 77975616 77975688 -43281842 + L2b LINE L2 3298 3375 0 1 1179 237 211 0 0 chr12 77976352 77976409 -43281121 + CT-rich Low_complexity Low_complexity 2 58 0 1 1179 25 0 0 0 chr12 77976421 77976446 -43281084 + AT_rich Low_complexity Low_complexity 1 25 0 1 1179 217 231 0 19 chr12 77976446 77976499 -43281031 + B4A SINE B4 83 134 -158 1 1179 570 150 190 8 chr12 77976454 77976575 -43280955 + B1_Mur4 SINE Alu 6 148 -2 1 1179 475 146 56 0 chr12 77976650 77976739 -43280791 - B1_Mur4 SINE Alu -23 127 34 1 1179 275 214 107 0 chr12 77977947 77978031 -43279499 + RSINE1 SINE B4 2 94 -71 1 1179 612 149 175 0 chr12 77978118 77978232 -43279298 + B1_Mur1 SINE Alu 1 134 -15 1 1179 652 178 101 0 chr12 77978413 77978542 -43278988 - B1F1 SINE Alu -7 142 1 1 1179 351 0 0 0 chr12 77978662 77978701 -43278829 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1179 303 154 0 0 chr12 77978703 77978768 -43278762 + GA-rich Low_complexity Low_complexity 2 66 0 1 1179 262 333 112 70 chr12 77978876 77979063 -43278467 - B4A SINE B4 -18 274 80 1 1179 996 123 0 0 chr12 77979104 77979259 -43278271 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 1 1179 1207 112 6 0 chr12 77979262 77979432 -43278098 - B2_Mm1t SINE B2 -22 171 1 1 1179 621 171 85 47 chr12 77979775 77979904 -43277626 - B1_Mur4 SINE Alu -1 149 16 1 1179 35 0 0 0 chr12 77980082 77980117 -43277413 + AT_rich Low_complexity Low_complexity 1 35 0 1 1179 250 168 180 50 chr12 77980124 77980224 -43277306 - Lx9 LINE L1 0 7644 7532 1 1179 1116 198 25 0 chr12 77980786 77980983 -43276547 + ID_B1 SINE B4 8 209 -15 1 1179 645 217 72 30 chr12 77980981 77981147 -43276383 - ID_B1 SINE B4 -51 173 1 1 1179 242 282 14 27 chr12 77981700 77981773 -43275757 - ID4_ SINE ID -10 73 2 1 1179 792 150 247 6 chr12 77981789 77981963 -43275567 - B3 SINE B2 0 216 1 1 1179 21 0 0 0 chr12 77982127 77982148 -43275382 + AT_rich Low_complexity Low_complexity 1 21 0 1 1179 419 290 44 25 chr12 77982545 77982704 -43274826 + RSINE1 SINE B4 3 164 -1 1 1179 665 275 40 25 chr12 77982849 77983047 -43274483 + MER3 DNA MER1_type 2 202 -7 1 1179 233 254 14 56 chr12 77983054 77983125 -43274405 + MER5A DNA MER1_type 3 70 -119 1 1179 599 221 84 42 chr12 77983131 77983273 -43274257 + B1F SINE Alu 2 149 0 1 1179 743 226 20 0 chr12 77983276 77983422 -43274108 + B1_Mur1 SINE Alu 1 149 0 1 1179 253 286 133 15 chr12 77983505 77983640 -43273890 - MER5B DNA MER1_type -15 163 13 1 1179 847 218 222 0 chr12 77983815 77984058 -43273472 - RLTR11A2 LTR ERVK -3 524 228 1 1179 661 188 11 28 chr12 77984063 77984244 -43273286 + C-rich Low_complexity Low_complexity 2 179 0 1 1179 579 67 140 32 chr12 77984255 77984348 -43273182 - B1_Mus1 SINE Alu -44 104 2 1 1179 1384 171 57 25 chr12 77984348 77984618 -43272912 - RLTR11A LTR ERVK -236 292 14 1 1179 235 149 106 0 chr12 77985198 77985245 -43272285 - PB1 SINE Alu -2 125 74 1 1179 354 342 26 0 chr12 77985279 77985393 -43272137 + PB1D10 SINE Alu 1 117 0 1 1179 1102 132 116 0 chr12 77985517 77985706 -43271824 - B3 SINE B2 -1 215 5 1 1179 464 225 26 18 chr12 77985932 77986045 -43271485 + PB1D7 SINE Alu 6 119 -1 1 1179 496 191 0 71 chr12 77986184 77986297 -43271233 + ID_B1 SINE B4 119 223 -1 1 1179 325 301 61 9 chr12 77986678 77986792 -43270738 + RMER5 LTR ERV1 379 498 -36 1 1179 1370 69 16 16 chr12 77986795 77986986 -43270544 - B2_Mm1a SINE B2 -2 191 1 1 1180 474 275 175 28 chr12 77987926 77988143 -43269387 - ORR1E LTR MaLR -110 249 1 1 1180 647 257 14 28 chr12 77989582 77989726 -43267804 + ID_B1 SINE B4 83 224 0 1 1180 430 197 74 29 chr12 77989932 77990051 -43267479 - B1_Mur1 SINE Alu 0 149 23 1 1180 401 282 128 15 chr12 77990141 77990274 -43267256 + RSINE1 SINE B4 15 162 -3 1 1180 423 98 0 0 chr12 77990287 77990348 -43267182 + (ATG)n Simple_repeat Simple_repeat 2 62 0 1 1180 1732 174 29 19 chr12 77990691 77991002 -43266528 - ORR1B2 LTR MaLR -2 365 52 1 1180 384 283 19 9 chr12 77991114 77991221 -43266309 + PB1D10 SINE Alu 2 109 -8 1 1180 453 173 46 80 chr12 77991222 77991373 -43266157 + B1_Mus2 SINE Alu 1 146 -1 1 1180 318 189 71 91 chr12 77991975 77992074 -43265456 + PB1D10 SINE Alu 21 117 0 1 1180 272 221 147 54 chr12 77992116 77992245 -43265285 + Charlie21a DNA MER1_type 510 650 -563 1 1180 300 265 295 14 chr12 77992723 77992930 -43264600 - RMER15 LTR ERVL 0 575 311 1 1180 387 308 25 8 chr12 77993060 77993178 -43264352 - Lx8 LINE L1 -387 7086 6967 1 1180 1170 68 0 0 chr12 77993251 77993398 -43264132 + B1_Mus1 SINE Alu 2 148 0 1 1180 1422 235 117 35 chr12 77993541 77993942 -43263588 - RMER15-int LTR ERVL -356 4643 4210 1 1180 263 262 82 0 chr12 77993980 77994041 -43263489 - RMER15-int LTR ERVL -2612 2387 2322 1 1180 678 78 111 8 chr12 77994332 77994449 -43263081 - B1_Mus1 SINE Alu -1 147 19 1 1180 293 225 116 110 chr12 77994449 77994486 -43263044 - B4 SINE B4 -67 224 70 1 1180 918 313 47 51 chr12 77994486 77994934 -43262596 - RMER15-int LTR ERVL -2915 2084 1639 1 1180 1157 141 5 11 chr12 77995186 77995372 -43262158 - URR1B DNA MER1_type -39 186 2 1 1180 1045 340 100 34 chr12 77995742 77996475 -43261055 - RMER15-int LTR ERVL -4217 782 2 1 1180 328 290 32 58 chr12 77996710 77996864 -43260666 - Lx8 LINE L1 -299 7174 7025 1 1180 180 0 0 0 chr12 77997433 77997453 -43260077 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1 1180 251 250 29 29 chr12 77997468 77997538 -43259992 + ID4 SINE ID 4 73 -10 1 1180 324 288 80 94 chr12 77997555 77997693 -43259837 - B1_Mur1 SINE Alu -13 136 1 1 1180 680 267 217 0 chr12 77997576 77997756 -43259774 - ID_B1 SINE B4 -2 222 4 1 1180 288 0 0 0 chr12 77997767 77997799 -43259731 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1180 302 292 175 0 chr12 77998765 77998885 -43258645 + ID_B1 SINE B4 83 223 -1 1 1180 873 173 5 0 chr12 77998902 77999284 -43258246 + (TG)n Simple_repeat Simple_repeat 1 383 0 1 1180 229 314 123 37 chr12 77999459 77999621 -43257909 - HAL1 LINE L1 -815 1692 1517 1 1180 407 267 33 33 chr12 77999841 77999961 -43257569 + PB1 SINE Alu 1 120 -7 1 1180 709 236 74 12 chr12 78000000 78000163 -43257367 + B3 SINE B2 39 211 -5 1 1180 389 286 148 61 chr12 78000231 78000555 -43256975 - L1MEf LINE L1 -5511 689 340 2 1180 241 326 75 8 chr12 78001085 78001218 -43256312 - HAL1 LINE L1 -1095 1412 1271 3 1180 349 287 18 18 chr12 78001219 78001329 -43256201 - PB1D10 SINE Alu -7 110 1 4 1180 249 311 107 0 chr12 78001771 78001874 -43255656 - Lx8 LINE L1 -493 6980 6867 5 1180 1252 54 0 0 chr12 78001905 78002052 -43255478 - B1_Mus2 SINE Alu 0 147 1 6 1180 394 295 63 21 chr12 78002083 78002225 -43255305 - HAL1 LINE L1 -1331 1176 1029 3 1180 1237 164 43 0 chr12 78002291 78002498 -43255032 + B3 SINE B2 1 216 0 7 1180 183 80 0 0 chr12 78002910 78002935 -43254595 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 8 1180 1077 186 65 7 chr12 78002935 78003184 -43254346 - ORR1C2 LTR MaLR -108 262 1 9 1180 315 328 55 96 chr12 78003205 78003404 -43254126 - HAL1 LINE L1 -2256 251 61 3 1180 561 216 60 0 chr12 78003464 78003580 -43253950 - ID_B1 SINE B4 -13 211 89 1 1180 246 226 23 23 chr12 78003597 78003683 -43253847 + L1MC4a LINE L1 5867 5952 -1930 1 1180 294 171 39 31 chr12 78003694 78003821 -43253709 + (TATG)n Simple_repeat Simple_repeat 1 128 0 1 1180 240 243 29 0 chr12 78004376 78004446 -43253084 + ID4_ SINE ID 2 73 -10 1 1180 1432 45 62 0 chr12 78004499 78004677 -43252853 + B2_Mm2 SINE B2 1 189 -6 1 1180 634 283 148 143 chr12 78004767 78005138 -43252392 - MTE2a LTR MaLR -6 373 1 1 1180 772 145 17 0 chr12 78005154 78005271 -43252259 - PB1D9 SINE Alu 0 120 2 1 1180 255 57 0 0 chr12 78005278 78005298 -43252232 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1180 1235 48 0 0 chr12 78005298 78005444 -43252086 - B1_Mm SINE Alu 0 147 2 1 1180 255 57 0 0 chr12 78005444 78005458 -43252072 + (T)n Simple_repeat Simple_repeat 1 14 0 1 1180 652 263 39 25 chr12 78005740 78005943 -43251587 + B4A SINE B4 2 207 -85 2 1180 942 159 7 0 chr12 78005952 78006090 -43251440 + B1_Mur4 SINE Alu 3 141 -9 2 1180 373 237 13 0 chr12 78006140 78006216 -43251314 - B1_Mur1 SINE Alu -11 138 62 2 1180 1217 85 85 0 chr12 78006288 78006464 -43251066 - B2_Mm2 SINE B2 -3 192 2 2 1180 461 182 148 20 chr12 78006536 78006637 -43250893 - PB1D10 SINE Alu -1 116 3 2 1180 265 226 53 20 chr12 78006637 78006720 -43250810 + AluF_3 SINE Alu 160 208 -103 2 1180 350 304 14 69 chr12 78006758 78006903 -43250627 + ID_B1 SINE B4 88 224 0 2 1180 490 165 25 0 chr12 78006906 78006985 -43250545 + ID4_ SINE ID 3 83 0 2 1180 255 79 0 0 chr12 78006993 78007031 -43250499 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 2 1180 284 214 188 30 chr12 78007059 78007160 -43250370 + ID_B1 SINE B4 88 204 -20 2 1180 813 216 198 25 chr12 78007494 78007732 -43249798 + B4 SINE B4 1 279 -13 3 1180 396 0 0 0 chr12 78007735 78007779 -43249751 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1180 3081 91 0 17 chr12 78008947 78009361 -43248169 - MTB_Mm LTR MaLR 0 407 1 3 1180 1032 95 13 13 chr12 78009653 78009803 -43247727 + B1_Mur4 SINE Alu 1 150 0 3 1180 333 0 0 0 chr12 78010860 78010897 -43246633 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1180 267 31 0 0 chr12 78010897 78010928 -43246602 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1180 669 234 23 0 chr12 78011785 78011913 -43245617 + RSINE1 SINE B4 3 133 -32 3 1180 251 282 25 25 chr12 78012038 78012118 -43245412 - ID4 SINE ID -3 80 1 3 1180 1289 124 26 0 chr12 78012717 78012911 -43244619 + URR1A DNA MER1_type 1 199 -27 3 1180 333 162 14 81 chr12 78012913 78012987 -43244543 + PB1D9 SINE Alu 2 70 -50 3 1180 516 207 106 16 chr12 78013161 78013284 -43244246 + B1_Mur1 SINE Alu 5 138 -11 4 1180 591 249 56 72 chr12 78013535 78013730 -43243800 - B3A SINE B2 0 198 7 4 1180 278 258 15 0 chr12 78013877 78013943 -43243587 - ID4_ SINE ID -14 69 3 4 1180 896 270 39 10 chr12 78013991 78014197 -43243333 + B3 SINE B2 5 216 0 4 1180 531 210 128 8 chr12 78014225 78014350 -43243180 + ID_B1 SINE B4 84 223 -1 4 1180 1095 215 102 4 chr12 78014423 78014689 -43242841 - B4A SINE B4 0 292 1 4 1180 212 156 188 0 chr12 78015089 78015153 -43242377 + ID SINE ID 1 76 -148 4 1180 544 184 88 88 chr12 78015993 78016130 -43241400 - B1_Mur3 SINE Alu -12 137 1 4 1180 4312 11 0 6 chr12 78016397 78016895 -43240635 + L1Md_T LINE L1 6109 6582 0 4 1180 306 132 0 0 chr12 78016939 78016992 -43240538 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1180 393 133 12 74 chr12 78018310 78018391 -43239139 - B1_Mur1 SINE Alu 0 149 74 5 1180 243 240 48 68 chr12 78018470 78018573 -43238957 - PB1D10 SINE Alu -15 102 2 5 1180 690 245 31 6 chr12 78018573 78018650 -43238880 - B4A SINE B4 -204 88 8 5 1180 419 232 198 8 chr12 78018684 78018810 -43238720 + RSINE1 SINE B4 3 152 -13 5 1180 23 68 0 0 chr12 78018845 78018889 -43238641 + AT_rich Low_complexity Low_complexity 1 44 0 5 1180 403 231 64 46 chr12 78018955 78019064 -43238466 - PB1D9 SINE Alu -9 111 1 5 1180 503 261 122 21 chr12 78019105 78019293 -43238237 + ID_B1 SINE B4 2 208 -16 5 1180 302 167 0 0 chr12 78019297 78019345 -43238185 + RSINE1 SINE B4 2 49 -116 5 1180 725 115 143 23 chr12 78019722 78019855 -43237675 - B1_Mur4 SINE Alu 0 150 2 5 1180 514 200 136 0 chr12 78020064 78020174 -43237356 + ID_B1 SINE B4 98 222 -2 5 1180 836 160 193 33 chr12 78020490 78020671 -43236859 - B3 SINE B2 -6 210 1 6 1180 1159 62 7 0 chr12 78020775 78020921 -43236609 - B1_Mus1 SINE Alu -1 147 1 6 1180 369 109 0 0 chr12 78022435 78022490 -43235040 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1180 585 0 0 0 chr12 78022491 78022556 -43234974 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1180 775 216 20 7 chr12 78022557 78022706 -43234824 - B3A SINE B2 -46 152 2 6 1180 319 368 103 35 chr12 78024491 78024781 -43232749 - L4 LINE RTE -278 1751 1442 6 1180 665 241 28 14 chr12 78024790 78024933 -43232597 + RSINE1 SINE B4 2 146 -19 6 1180 183 162 0 0 chr12 78024936 78024973 -43232557 + (CATG)n Simple_repeat Simple_repeat 2 38 0 6 1180 31 92 0 0 chr12 78024983 78025070 -43232460 + AT_rich Low_complexity Low_complexity 1 87 0 6 1180 764 236 66 10 chr12 78025108 78025305 -43232225 + B3 SINE B2 1 208 -8 6 1180 1294 34 0 0 chr12 78025327 78025474 -43232056 + B1_Mus2 SINE Alu 1 147 0 7 1180 255 61 0 0 chr12 78025474 78025507 -43232023 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1180 211 106 42 21 chr12 78025551 78025599 -43231931 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1180 302 333 0 11 chr12 78025647 78025739 -43231791 + ID4_ SINE ID 2 92 -60 7 1180 183 42 0 0 chr12 78025740 78025764 -43231766 + (CAG)n Simple_repeat Simple_repeat 2 25 0 7 1180 408 291 201 11 chr12 78026259 78026433 -43231097 - MER58A DNA MER1_type -9 215 9 7 1180 412 269 11 0 chr12 78026641 78026734 -43230796 + PB1D10 SINE Alu 1 94 -23 7 1180 508 270 0 35 chr12 78026732 78026847 -43230683 + RSINE1 SINE B4 45 155 -10 7 1180 457 236 40 6 chr12 78026890 78027026 -43230504 - ORR1D2 LTR MaLR -183 176 32 7 1180 884 75 104 8 chr12 78027028 78027162 -43230368 + B1_Mur3 SINE Alu 1 147 -2 7 1180 517 235 17 9 chr12 78027856 78027972 -43229558 - PB1D10 SINE Alu 0 117 1 8 1180 220 360 69 45 chr12 78028133 78028312 -43229218 - MIRb SINE MIR -66 202 25 8 1180 267 243 28 28 chr12 78028487 78028559 -43228971 - ID4_ SINE ID -6 77 6 8 1180 281 262 87 10 chr12 78028944 78029048 -43228482 + ID_B1 SINE B4 112 223 -1 8 1180 258 160 0 0 chr12 78029081 78029131 -43228399 + GA-rich Low_complexity Low_complexity 3 52 0 8 1180 489 205 0 0 chr12 78029174 78029296 -43228234 + GA-rich Low_complexity Low_complexity 1 122 0 8 1180 313 205 186 35 chr12 78029321 78029407 -43228123 + ID_B1 SINE B4 126 224 0 8 1180 1006 194 30 0 chr12 78029411 78029612 -43227918 + B3 SINE B2 1 207 -9 8 1180 759 205 30 42 chr12 78029747 78029915 -43227615 + B3 SINE B2 1 166 -50 8 1180 513 278 101 67 chr12 78029922 78030005 -43227525 - L1MC3 LINE L1 -151 7634 7551 8 1180 515 265 71 19 chr12 78030005 78030159 -43227371 - RSINE1 SINE B4 0 165 4 8 1180 513 278 101 67 chr12 78030159 78030372 -43227158 - L1MC3 LINE L1 -235 7550 7328 8 1180 285 98 0 0 chr12 78030431 78030472 -43227058 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 9 1180 250 383 102 0 chr12 78030592 78030720 -43226810 + MER2 DNA MER2_type 30 170 -175 9 1180 263 246 185 0 chr12 78030744 78030809 -43226721 - ID SINE ID -147 77 1 9 1180 426 346 46 0 chr12 78030816 78030946 -43226584 + MER2 DNA MER2_type 210 345 0 9 1180 342 278 141 16 chr12 78030946 78031074 -43226456 - L1MC3 LINE L1 -765 7020 6877 8 1180 1208 55 0 7 chr12 78031808 78031956 -43225574 + B1_Mus2 SINE Alu 1 147 0 9 1180 210 150 0 0 chr12 78031958 78031998 -43225532 + (A)n Simple_repeat Simple_repeat 1 40 0 9 1180 1141 82 7 0 chr12 78032044 78032190 -43225340 - B1_Mus1 SINE Alu -1 147 1 9 1180 1686 16 0 0 chr12 78032543 78032731 -43224799 - B2_Mm1a SINE B2 -5 188 1 9 1180 479 299 79 44 chr12 78033951 78034154 -43223376 + LTR31 LTR ERV1 276 485 -134 9 1180 802 123 20 7 chr12 78034384 78034531 -43222999 + BC1_Mm scRNA scRNA 1 149 -3 9 1180 1167 241 143 24 chr12 78034953 78035331 -43222199 + RMER5 LTR ERV1 1 423 -111 9 1180 408 268 26 43 chr12 78035403 78035520 -43222010 - PB1D9 SINE Alu -3 117 3 1 1180 281 266 250 7 chr12 78036354 78036494 -43221036 - MIR SINE MIR -65 197 24 1 1180 553 225 57 14 chr12 78036603 78036743 -43220787 + B1F1 SINE Alu 4 149 0 1 1180 216 361 76 0 chr12 78041317 78041436 -43216094 - MIRb SINE MIR -132 136 9 1 1180 221 238 0 23 chr12 78041494 78041537 -43215993 - B1F SINE Alu -103 46 5 1 1180 391 260 276 0 chr12 78041583 78041706 -43215824 - ID_B1 SINE B4 -33 191 35 1 1180 208 291 50 76 chr12 78042556 78042675 -43214855 - L2c LINE L2 -2 3385 3270 1 1180 1097 95 0 0 chr12 78042946 78043094 -43214436 - B1_Mus1 SINE Alu 0 148 1 1 1180 433 193 0 128 chr12 78042991 78043116 -43214414 - MT2B LTR ERVL -344 257 149 1 1180 1117 96 0 25 chr12 78043253 78043413 -43214117 + B2_Mm2 SINE B2 2 157 -38 1 1180 631 187 111 24 chr12 78044030 78044156 -43213374 - B1_Mus2 SINE Alu -10 137 1 1 1180 324 0 0 0 chr12 78044350 78044386 -43213144 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1180 231 238 71 0 chr12 78046170 78046237 -43211293 + B1_Mus1 SINE Alu 23 94 -55 1 1180 319 294 130 0 chr12 78047191 78047283 -43210247 - ID_B1 SINE B4 -120 104 1 1 1180 584 214 35 35 chr12 78047514 78047659 -43209871 + ID_B1 SINE B4 78 222 -2 1 1180 1246 21 21 0 chr12 78047660 78047805 -43209725 + B1_Mus1 SINE Alu 1 148 0 1 1180 27 49 0 0 chr12 78047949 78047990 -43209540 + AT_rich Low_complexity Low_complexity 1 41 0 1 1180 207 232 180 79 chr12 78049291 78049380 -43208150 + MIRm SINE MIR 15 112 -164 1 1180 276 257 36 0 chr12 78049686 78049757 -43207773 - B1F SINE Alu -13 107 32 1 1180 198 329 40 0 chr12 78049834 78049910 -43207620 + MIR SINE MIR 35 113 -95 1 1180 488 244 98 0 chr12 78049978 78050101 -43207429 - ID_B1 SINE B4 -9 215 81 1 1180 417 167 119 0 chr12 78050142 78050226 -43207304 - B3 SINE B2 -86 130 37 1 1180 433 246 124 23 chr12 78050389 78050518 -43207012 + B1F1 SINE Alu 7 148 -1 1 1180 569 196 0 18 chr12 78050717 78050826 -43206704 + B1_Mur2 SINE Alu 43 149 0 1 1180 900 170 7 14 chr12 78050896 78051039 -43206491 + B1_Mur2 SINE Alu 1 142 -7 1 1180 245 171 12 50 chr12 78051059 78051139 -43206391 + A-rich Low_complexity Low_complexity 2 78 0 1 1180 228 35 0 0 chr12 78051791 78051820 -43205710 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1180 481 273 9 0 chr12 78051834 78051944 -43205586 + ID_B1 SINE B4 108 218 -6 1 1180 447 266 62 27 chr12 78052196 78052308 -43205222 - B1_Mur2 SINE Alu -32 117 2 1 1180 255 307 20 105 chr12 78052308 78052361 -43205169 - MT2B LTR ERVL -443 158 119 1 1180 283 228 19 0 chr12 78053863 78053924 -43203606 + ID4_ SINE ID 30 91 -61 1 1180 315 240 65 65 chr12 78058072 78058179 -43199351 + PB1D10 SINE Alu 1 107 -10 1 1180 351 60 0 0 chr12 78059048 78059098 -43198432 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1180 450 187 10 13 chr12 78059098 78059183 -43198347 - B1F SINE Alu -28 92 3 1 1180 24 67 0 0 chr12 78059288 78059333 -43198197 + AT_rich Low_complexity Low_complexity 1 45 0 1 1180 244 276 82 31 chr12 78059950 78060047 -43197483 + MT2B LTR ERVL 139 240 -361 1 1180 459 0 0 0 chr12 78060067 78060118 -43197412 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1180 472 245 58 0 chr12 78060441 78060580 -43196950 - B1F SINE Alu 0 149 3 1 1180 320 223 142 28 chr12 78060588 78060694 -43196836 - PB1D7 SINE Alu -2 118 1 1 1180 619 223 58 41 chr12 78060760 78060905 -43196625 + RSINE1 SINE B4 1 149 -16 1 1180 572 91 11 0 chr12 78060909 78060997 -43196533 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1180 320 195 13 13 chr12 78061032 78061110 -43196420 + ID4 SINE ID 3 80 -3 1 1180 265 345 63 77 chr12 78061149 78061356 -43196174 + MER102c DNA MER1_type 69 272 -59 1 1180 202 216 0 0 chr12 78062012 78062049 -43195481 + (CCTA)n Simple_repeat Simple_repeat 4 40 0 1 1180 180 0 0 0 chr12 78062451 78062471 -43195059 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1180 231 103 0 0 chr12 78063109 78063148 -43194382 + (CTCA)n Simple_repeat Simple_repeat 4 42 0 1 1180 252 0 0 0 chr12 78064242 78064270 -43193260 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 1180 931 40 143 0 chr12 78064592 78064718 -43192812 - B1_Mus1 SINE Alu -2 146 3 1 1180 351 286 44 70 chr12 78064819 78064977 -43192553 + MER5B DNA MER1_type 11 164 -14 1 1180 288 178 38 88 chr12 78065003 78065083 -43192447 + L1MB7 LINE L1 6109 6184 0 1 1180 1179 61 0 13 chr12 78065351 78065500 -43192030 + B1_Mus1 SINE Alu 2 148 0 1 1180 279 229 41 41 chr12 78065505 78065578 -43191952 - B1F2 SINE Alu -76 73 1 1 1180 276 30 0 0 chr12 78065639 78065672 -43191858 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 1 1180 288 338 29 0 chr12 78065690 78065826 -43191704 + L1M5 LINE L1 2689 2828 -3318 1 1180 23 0 0 0 chr12 78065894 78065917 -43191613 + AT_rich Low_complexity Low_complexity 1 23 0 1 1180 280 343 19 0 chr12 78065917 78066022 -43191508 + ID_B1 SINE B4 76 182 -42 1 1180 347 337 0 0 chr12 78066568 78066663 -43190867 - PB1D10 SINE Alu -17 100 6 1 1180 342 0 0 0 chr12 78066855 78066893 -43190637 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1180 1976 126 30 29 chr12 78066998 78067416 -43190114 + RMER17C LTR ERVK 1 405 -5 1 1180 850 266 40 84 chr12 78067514 78067810 -43189720 + B4A SINE B4 6 288 -4 1 1180 312 27 0 0 chr12 78067839 78067876 -43189654 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1 1180 189 107 0 0 chr12 78068048 78068076 -43189454 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1180 293 194 151 14 chr12 78068318 78068391 -43189139 + ID2 SINE ID 1 83 0 1 1180 742 262 230 3 chr12 78068417 78068735 -43188795 + L1MA5 LINE L1 5488 5877 -423 1 1180 1132 48 13 33 chr12 78069144 78069296 -43188234 - B1_Mur4 SINE Alu -1 149 1 1 1180 261 0 0 0 chr12 78069566 78069595 -43187935 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1180 568 221 48 9 chr12 78069595 78069689 -43187841 - PB1D7 SINE Alu -14 106 8 1 1180 243 191 76 45 chr12 78069640 78069706 -43187824 + YREP_Mm Unknown Unknown 257 324 -1488 1 1180 1197 68 0 0 chr12 78069727 78069875 -43187655 - B1_Mus1 SINE Alu 0 148 1 1 1180 315 0 0 0 chr12 78069903 78069938 -43187592 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1180 501 261 36 29 chr12 78069939 78070077 -43187453 - RSINE1 SINE B4 -16 149 11 1 1180 195 42 0 0 chr12 78070100 78070124 -43187406 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1180 394 281 0 0 chr12 78070127 78070209 -43187321 + ID4_ SINE ID 2 83 0 1 1180 580 299 0 92 chr12 78070337 78070543 -43186987 - ID_B1 SINE B4 -3 221 35 1 1180 213 293 0 17 chr12 78070493 78070552 -43186978 - ID4_ SINE ID 0 83 26 1 1180 288 286 13 13 chr12 78070724 78070802 -43186728 - ID4 SINE ID -4 79 2 1 1180 318 287 43 0 chr12 78070820 78070914 -43186616 - B1F SINE Alu -10 139 42 1 1180 24 53 0 0 chr12 78070952 78070990 -43186540 + AT_rich Low_complexity Low_complexity 1 38 0 1 1180 550 262 42 14 chr12 78070999 78071142 -43186388 + B1_Mur1 SINE Alu 2 148 -1 1 1180 351 0 0 0 chr12 78071199 78071238 -43186292 + (CAA)n Simple_repeat Simple_repeat 3 41 0 1 1180 330 137 0 0 chr12 78071591 78071642 -43185888 + HAL1-3A_ME LINE L1 1962 2012 -846 1 1180 450 133 73 7 chr12 78071643 78071794 -43185736 + (CA)n Simple_repeat Simple_repeat 1 161 0 1 1180 288 0 0 0 chr12 78071826 78071858 -43185672 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1180 635 224 56 8 chr12 78071917 78072043 -43185487 - RSINE1 SINE B4 -22 143 12 1 1180 425 221 12 49 chr12 78072061 78072142 -43185388 - ID4_ SINE ID 0 83 6 1 1180 1056 222 5 50 chr12 78072193 78072411 -43185119 - B3 SINE B2 -6 210 3 1 1180 816 214 22 33 chr12 78072456 78072640 -43184890 - B3A SINE B2 -16 182 1 1 1180 252 206 113 42 chr12 78072659 78072730 -43184800 + ID_B1 SINE B4 100 175 -49 1 1180 300 289 101 20 chr12 78072766 78072865 -43184665 + PB1D10 SINE Alu 2 108 -9 1 1180 253 289 47 24 chr12 78072921 78073006 -43184524 - MIRc SINE MIR -181 87 1 1 1180 486 239 86 36 chr12 78074058 78074197 -43183333 - RMER20B LTR ERVK -24 603 458 1 1180 607 257 81 27 chr12 78074209 78074469 -43183061 - RMER20B LTR ERVK -88 539 266 1 1180 1127 48 14 7 chr12 78074472 78074618 -43182912 + B1_Mm SINE Alu 1 147 0 1 1180 234 0 0 0 chr12 78074618 78074644 -43182886 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1180 654 268 21 7 chr12 78074657 78074800 -43182730 - RMER20B LTR ERVK -473 154 10 1 1180 414 191 23 45 chr12 78074870 78074955 -43182575 - ID_B1 SINE B4 -8 216 134 1 1180 317 306 26 18 chr12 78074955 78075068 -43182462 + PB1D10 SINE Alu 2 115 -2 1 1180 784 99 110 37 chr12 78075102 78075238 -43182292 - URR1A DNA MER1_type 0 226 81 1 1180 366 254 169 16 chr12 78075331 78075455 -43182075 - B1F2 SINE Alu 0 149 7 1 1180 238 337 0 38 chr12 78075728 78075833 -43181697 - L1M5 LINE L1 -1151 4995 4895 1 1180 475 280 26 53 chr12 78075837 78075988 -43181542 + B1F2 SINE Alu 2 148 -1 1 1180 265 204 130 0 chr12 78076015 78076069 -43181461 + ID SINE ID 5 65 -159 1 1180 955 172 0 0 chr12 78076076 78076221 -43181309 - B1_Mus2 SINE Alu -1 146 2 2 1180 228 273 43 43 chr12 78076292 78076384 -43181146 - L1M5 LINE L1 -1419 4727 4636 1 1180 492 204 11 0 chr12 78076422 78076515 -43181015 + B1F SINE Alu 40 133 -16 2 1180 636 282 28 9 chr12 78076640 78076858 -43180672 - L1M5 LINE L1 -1534 4612 4391 1 1180 204 40 0 0 chr12 78076903 78076928 -43180602 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1180 444 303 90 0 chr12 78076934 78077056 -43180474 - RSINE1 SINE B4 -31 134 2 2 1180 376 305 55 34 chr12 78077061 78077207 -43180323 - L1M5 LINE L1 -1769 4377 4229 1 1180 304 257 151 22 chr12 78077327 78077466 -43180064 - HAL1-3A_ME LINE L1 -416 2442 2286 2 1180 406 221 0 39 chr12 78077470 78077597 -43179933 - Lx9 LINE L1 -3 7641 7520 2 1180 180 125 0 0 chr12 78077598 78077630 -43179900 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2 1180 3517 228 87 46 chr12 78077630 78078733 -43178797 - Lx9 LINE L1 -187 7457 6310 2 1180 276 276 28 101 chr12 78078913 78078926 -43178604 + MT2B LTR ERVL 157 161 -440 2 1180 764 154 5 24 chr12 78078926 78079059 -43178471 + B1_Mus1 SINE Alu 4 140 -9 2 1180 261 0 0 0 chr12 78079059 78079088 -43178442 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2 1180 246 273 0 0 chr12 78079097 78079152 -43178378 - ID4_ SINE ID -26 57 3 2 1180 627 272 183 8 chr12 78079232 78079473 -43178057 - B4A SINE B4 -6 286 4 2 1180 519 263 41 77 chr12 78079714 78079883 -43177647 - RSINE1 SINE B4 0 165 3 2 1180 392 260 136 38 chr12 78079908 78080040 -43177490 + B1F2 SINE Alu 2 146 -3 2 1180 183 80 0 0 chr12 78080054 78080079 -43177451 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1180 607 276 16 0 chr12 78080094 78080173 -43177357 + ID SINE ID 1 81 -143 2 1180 234 344 0 32 chr12 78080173 78080236 -43177294 + PB1D10 SINE Alu 1 61 -56 2 1180 23 0 0 0 chr12 78080243 78080266 -43177264 + AT_rich Low_complexity Low_complexity 1 23 0 2 1180 371 242 114 24 chr12 78080932 78081055 -43176475 - B1F SINE Alu -15 134 1 2 1180 27 62 0 0 chr12 78081114 78081162 -43176368 + AT_rich Low_complexity Low_complexity 1 48 0 2 1180 326 270 52 43 chr12 78081168 78081284 -43176246 - PB1D10 SINE Alu 0 117 1 2 1180 522 268 54 74 chr12 78081299 78081448 -43176082 - B1F1 SINE Alu -3 146 1 2 1180 767 232 15 35 chr12 78081614 78081811 -43175719 - B3A SINE B2 -5 193 1 2 1180 293 346 19 19 chr12 78081914 78082017 -43175513 + LTR84a LTR ERVL 3 105 -652 2 1180 377 250 25 0 chr12 78082021 78082101 -43175429 - ID4_ SINE ID 0 83 2 2 1180 274 262 70 23 chr12 78082221 78082307 -43175223 - MIR SINE MIR -171 91 2 2 1180 228 299 52 0 chr12 78083175 78083252 -43174278 - ID4_ SINE ID -1 82 2 2 1180 550 285 8 23 chr12 78083513 78083646 -43173884 - B1F2 SINE Alu 0 149 19 2 1180 278 301 35 46 chr12 78083642 78083661 -43173869 - MER115 DNA Tip100 -607 86 71 2 1180 489 71 35 0 chr12 78083661 78083746 -43173784 - L1Md_F2 LINE L1 0 6582 6495 2 1180 278 301 35 46 chr12 78083746 78083813 -43173717 - MER115 DNA Tip100 -623 70 1 2 1180 818 56 127 0 chr12 78084828 78084954 -43172576 - B1_Mus1 SINE Alu 0 148 7 2 1180 204 295 0 0 chr12 78084955 78085033 -43172497 + C-rich Low_complexity Low_complexity 1 78 0 2 1180 231 328 44 44 chr12 78085147 78085284 -43172246 - L1MB5 LINE L1 -36 6138 6002 2 1180 315 0 0 0 chr12 78085316 78085351 -43172179 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1180 626 282 109 0 chr12 78085352 78085526 -43172004 - ID_B1 SINE B4 -31 193 1 2 1180 277 351 80 16 chr12 78085559 78085747 -43171783 + MIRb SINE MIR 52 251 -17 2 1180 249 337 12 12 chr12 78085859 78085890 -43171640 + (CGTG)n Simple_repeat Simple_repeat 3 33 0 2 1180 594 41 0 0 chr12 78085890 78085963 -43171567 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 1180 249 337 12 12 chr12 78085963 78086015 -43171515 + (CGTG)n Simple_repeat Simple_repeat 2 54 0 2 1180 579 311 107 4 chr12 78086016 78086277 -43171253 - B4A SINE B4 0 292 5 2 1180 522 196 3 0 chr12 78086354 78086452 -43171078 - PB1D10 SINE Alu -47 103 3 2 1180 287 104 21 0 chr12 78086456 78086504 -43171026 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 2 1180 913 151 0 14 chr12 78086519 78086667 -43170863 - B1_Mus1 SINE Alu -2 146 1 2 1180 696 208 4 16 chr12 78086684 78086945 -43170585 + CT-rich Low_complexity Low_complexity 1 257 0 2 1180 318 132 0 0 chr12 78086954 78087007 -43170523 + (TCC)n Simple_repeat Simple_repeat 3 55 0 2 1180 692 245 14 28 chr12 78087009 78087152 -43170378 - ID_B1 SINE B4 -1 223 83 2 1180 362 279 217 25 chr12 78087281 78087516 -43170014 - B4A SINE B4 -9 283 4 2 1180 201 74 0 0 chr12 78087703 78087730 -43169800 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 1180 719 240 105 7 chr12 78087753 78087859 -43169671 - L1MA4 LINE L1 -393 5907 5794 2 1180 422 73 61 20 chr12 78087859 78087957 -43169573 + (CATA)n Simple_repeat Simple_repeat 2 103 0 2 1180 719 240 105 7 chr12 78087957 78088135 -43169395 - L1MA4 LINE L1 -507 5793 5596 2 1180 539 309 24 0 chr12 78088181 78088349 -43169181 - Lx8 LINE L1 -1008 6465 6294 2 1180 539 29 14 0 chr12 78088355 78088424 -43169106 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 2 1180 231 36 0 0 chr12 78088424 78088452 -43169078 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1180 447 176 0 0 chr12 78088528 78088619 -43168911 + GA-rich Low_complexity Low_complexity 3 93 0 2 1180 349 262 104 74 chr12 78088781 78089078 -43168452 - Lx8 LINE L1 -406 5474 5169 2 1180 511 380 48 75 chr12 78089625 78089918 -43167612 - MER45C DNA Tip100 -111 842 558 2 1180 323 371 82 14 chr12 78089917 78090122 -43167408 - MER45C DNA Tip100 -639 314 96 2 1180 276 312 144 10 chr12 78090122 78090219 -43167311 + PB1D7 SINE Alu 1 110 -10 2 1180 777 222 291 19 chr12 78090455 78090774 -43166756 + MTC LTR MaLR 13 418 -1 2 1180 367 294 86 61 chr12 78090907 78091015 -43166515 + ORR1E LTR MaLR 7 118 -241 2 1180 746 179 89 7 chr12 78091015 78091150 -43166380 + B3 SINE B2 3 148 -68 2 1180 744 269 88 22 chr12 78091137 78091286 -43166244 + ORR1D2 LTR MaLR 117 277 -93 2 1180 899 182 149 10 chr12 78091286 78091480 -43166050 + URR1B DNA MER1_type 5 225 0 2 1180 744 269 88 22 chr12 78091480 78091558 -43165972 + ORR1D2 LTR MaLR 278 358 -12 2 1180 829 297 92 205 chr12 78091569 78091805 -43165725 + ORR1E-int LTR MaLR 675 895 -685 2 1180 914 85 61 8 chr12 78091805 78091936 -43165594 + B1_Mus1 SINE Alu 1 138 -10 2 1180 829 297 92 205 chr12 78091936 78091974 -43165556 + ORR1E-int LTR MaLR 896 991 -589 2 1180 1038 111 45 28 chr12 78091974 78092150 -43165380 + B2_Mm2 SINE B2 1 179 -16 2 1180 288 0 0 0 chr12 78092150 78092182 -43165348 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1180 829 297 92 205 chr12 78092182 78092481 -43165049 + ORR1E-int LTR MaLR 992 1218 -362 2 1180 1645 37 0 5 chr12 78092481 78092493 -43165037 - B2_Mm1a SINE B2 -2 191 180 2 1180 402 57 0 0 chr12 78092493 78092546 -43164984 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 2 1180 1645 37 0 5 chr12 78092546 78092725 -43164805 - B2_Mm1a SINE B2 -14 179 1 2 1180 266 0 29 0 chr12 78092729 78092763 -43164767 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1180 829 297 92 205 chr12 78092763 78093146 -43164384 + ORR1E-int LTR MaLR 1219 1525 -55 2 1180 696 320 92 46 chr12 78093146 78093473 -43164057 + ORR1E LTR MaLR 1 342 -17 2 1180 552 56 0 0 chr12 78093579 78093651 -43163879 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 2 1180 631 178 130 15 chr12 78093661 78093792 -43163738 - B1_Mur1 SINE Alu -1 148 3 2 1180 269 225 49 24 chr12 78094420 78094502 -43163028 - B3A SINE B2 -113 85 2 2 1180 955 222 54 5 chr12 78094927 78095131 -43162399 - B3 SINE B2 -2 214 1 2 1180 442 234 0 41 chr12 78095391 78095489 -43162041 + BC1_Mm scRNA scRNA 4 97 -55 2 1180 324 206 132 0 chr12 78095527 78095595 -43161935 + ID4_ SINE ID 1 77 -6 2 1180 416 271 80 36 chr12 78096025 78096163 -43161367 + MER3 DNA MER1_type 59 202 -7 2 1180 334 273 203 8 chr12 78096216 78096349 -43161181 - HAL1-3A_ME LINE L1 -418 2440 2282 2 1180 207 0 0 0 chr12 78097182 78097205 -43160325 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1180 1125 66 0 0 chr12 78097209 78097345 -43160185 - B1_Mus1 SINE Alu -11 137 2 2 1180 217 236 16 20 chr12 78097399 78097470 -43160060 + MIR SINE MIR 42 110 -158 2 1180 320 254 213 8 chr12 78098011 78098036 -43159494 - B4A SINE B4 -46 246 94 2 1180 493 245 39 0 chr12 78098036 78098138 -43159392 - PB1D7 SINE Alu -6 114 9 2 1180 355 265 69 56 chr12 78098358 78098502 -43159028 - B1F2 SINE Alu 0 149 4 2 1180 225 0 0 0 chr12 78098657 78098682 -43158848 + (TGGGGG)n Simple_repeat Simple_repeat 2 26 0 2 1180 210 208 0 0 chr12 78098912 78098960 -43158570 + GA-rich Low_complexity Low_complexity 1 48 0 2 1180 2860 133 105 0 chr12 78099114 78099610 -43157920 - RMER13A LTR ERVK -312 548 1 2 1180 185 198 23 23 chr12 78100196 78100284 -43157246 + GA-rich Low_complexity Low_complexity 4 91 0 2 1180 591 246 56 76 chr12 78100530 78100728 -43156802 + B3A SINE B2 1 194 -4 2 1180 353 215 62 25 chr12 78100801 78100882 -43156648 + MER63D DNA AcHobo 302 385 -676 2 1180 493 73 20 30 chr12 78101647 78101746 -43155784 + (CA)n Simple_repeat Simple_repeat 2 99 0 2 1180 203 239 120 43 chr12 78101838 78101930 -43155600 - MIRc SINE MIR -168 100 2 2 1180 252 0 0 0 chr12 78102269 78102297 -43155233 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 2 1180 639 175 0 0 chr12 78102298 78102418 -43155112 + CT-rich Low_complexity Low_complexity 1 120 0 2 1180 387 0 0 0 chr12 78102428 78102471 -43155059 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1180 687 332 36 22 chr12 78102523 78102745 -43154785 - B4 SINE B4 -10 282 58 2 1180 1025 58 11 28 chr12 78103244 78103420 -43154110 + (CA)n Simple_repeat Simple_repeat 2 174 0 2 1180 567 276 38 25 chr12 78103987 78104147 -43153383 + RSINE1 SINE B4 4 165 0 2 1180 2375 121 68 5 chr12 78104820 78105203 -43152327 + MTC LTR MaLR 1 407 -14 2 1180 202 194 0 0 chr12 78105604 78105640 -43151890 + GA-rich Low_complexity Low_complexity 2 37 0 2 1180 551 217 0 36 chr12 78106734 78106844 -43150686 - PB1D10 SINE Alu 0 117 12 2 1180 859 182 0 13 chr12 78107051 78107201 -43150329 + B1_Mur3 SINE Alu 2 149 0 2 1180 1691 284 90 39 chr12 78107215 78108003 -43149527 + L1MC4 LINE L1 7215 8042 0 3 1180 828 191 0 0 chr12 78108140 78108308 -43149222 + (TG)n Simple_repeat Simple_repeat 2 169 0 3 1180 255 125 0 0 chr12 78108524 78108564 -43148966 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 3 1180 599 205 6 33 chr12 78108581 78108763 -43148767 + CT-rich Low_complexity Low_complexity 3 179 0 3 1180 259 278 0 0 chr12 78108763 78108817 -43148713 + polypyrimidine Low_complexity Low_complexity 5 58 0 3 1180 227 238 0 0 chr12 78108960 78109002 -43148528 + G-rich Low_complexity Low_complexity 3 44 0 3 1180 204 67 0 0 chr12 78109766 78109796 -43147734 + (CAA)n Simple_repeat Simple_repeat 2 31 0 3 1180 466 262 32 32 chr12 78110930 78111084 -43146446 + MLT1H LTR MaLR 392 545 -4 3 1180 826 121 0 43 chr12 78111280 78111418 -43146112 - B1_Mur3 SINE Alu 0 149 18 3 1180 343 218 92 125 chr12 78111283 78111435 -43146095 - B4 SINE B4 -69 223 77 3 1180 1023 127 0 0 chr12 78111471 78111716 -43145814 + (TG)n Simple_repeat Simple_repeat 1 245 0 3 1180 267 293 23 58 chr12 78111717 78111804 -43145726 - RSINE1 SINE B4 -1 164 81 3 1180 346 350 14 41 chr12 78111879 78112025 -43145505 - B4A SINE B4 -149 143 2 3 1180 859 234 25 20 chr12 78112177 78112373 -43145157 + B3 SINE B2 20 216 0 3 1180 822 211 0 0 chr12 78112705 78112847 -43144683 - B1_Mur1 SINE Alu -6 143 2 3 1180 388 113 0 0 chr12 78113094 78113147 -43144383 + B3A SINE B2 2 54 -144 3 1180 281 82 0 20 chr12 78113147 78113197 -43144333 + (CAAAC)n Simple_repeat Simple_repeat 2 50 0 3 1180 597 289 7 0 chr12 78113207 78113342 -43144188 + RSINE1 SINE B4 2 137 -28 3 1180 301 221 20 140 chr12 78113514 78113530 -43144000 + MT2B LTR ERVL 153 156 -445 3 1180 755 203 7 27 chr12 78113530 78113677 -43143853 + B1_Mur2 SINE Alu 1 144 -5 3 1180 414 350 90 9 chr12 78113736 78113958 -43143572 + MLT1K LTR MaLR 159 398 -197 3 1180 366 175 0 0 chr12 78114269 78114349 -43143181 + C-rich Low_complexity Low_complexity 2 81 0 3 1180 23 33 0 0 chr12 78114428 78114458 -43143072 + AT_rich Low_complexity Low_complexity 1 30 0 3 1180 842 154 22 0 chr12 78114460 78114596 -43142934 + B1_Mur3 SINE Alu 5 143 -6 3 1180 556 217 58 8 chr12 78114678 78114799 -43142731 - RSINE1 SINE B4 -37 128 2 3 1180 333 292 125 0 chr12 78115019 78115115 -43142415 - MER2B DNA MER2_type 0 336 229 3 1180 533 242 71 13 chr12 78115139 78115294 -43142236 + MER2 DNA MER2_type 86 249 -96 3 1180 500 276 13 58 chr12 78115300 78115454 -43142076 - B3A SINE B2 -47 151 5 3 1180 2018 162 61 66 chr12 78115469 78115865 -43141665 + ORR1B1 LTR MaLR 1 394 0 3 1180 1091 79 17 6 chr12 78116276 78116454 -43141076 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1180 1265 73 6 0 chr12 78116465 78116643 -43140887 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1180 837 28 0 27 chr12 78116732 78116844 -43140686 - B1_Mus1 SINE Alu 0 148 40 3 1180 319 145 74 62 chr12 78116777 78116858 -43140672 - RLTR25B LTR ERVK -519 509 428 3 1180 1119 181 28 5 chr12 78116874 78117085 -43140445 - B3 SINE B2 0 216 1 3 1180 1084 72 26 13 chr12 78117090 78117244 -43140286 - B2_Mm2 SINE B2 -4 191 36 3 1180 204 226 0 0 chr12 78117319 78117372 -43140158 + T-rich Low_complexity Low_complexity 2 54 0 3 1180 441 178 316 58 chr12 78117372 78117527 -43140003 - B2_Mm2 SINE B2 0 195 1 3 1180 792 188 20 14 chr12 78117531 78117677 -43139853 - B1_Mus1 SINE Alu -1 147 1 3 1180 472 227 130 151 chr12 78117731 78117879 -43139651 + MTE2a LTR MaLR 192 336 -43 3 1180 925 178 194 0 chr12 78117879 78118059 -43139471 - B3 SINE B2 0 216 2 3 1180 472 227 130 151 chr12 78118059 78118102 -43139428 + MTE2a LTR MaLR 337 379 0 3 1180 231 204 168 21 chr12 78118321 78118416 -43139114 - L1M3 LINE L1 -1803 4340 4232 3 1180 444 319 7 21 chr12 78118549 78118690 -43138840 + ID_B1 SINE B4 83 221 -3 3 1180 475 239 50 33 chr12 78118571 78118692 -43138838 + B1F SINE Alu 24 146 -3 3 1180 437 330 26 69 chr12 78118694 78118883 -43138647 + ID_B1 SINE B4 6 186 -38 3 1180 645 171 65 0 chr12 78118783 78118906 -43138624 + B1_Mus2 SINE Alu 5 135 -12 3 1181 405 0 0 0 chr12 78118922 78118967 -43138563 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1181 1343 258 42 17 chr12 78118972 78119375 -43138155 - L1M3 LINE L1 -2120 4020 3608 3 1181 1013 286 41 81 chr12 78119376 78119745 -43137785 - ORR1E LTR MaLR 0 359 6 3 1181 1683 118 132 6 chr12 78119959 78120156 -43137374 - RMER17C LTR ERVK -8 402 197 3 1181 435 38 0 0 chr12 78120156 78120209 -43137321 + (GGA)n Simple_repeat Simple_repeat 2 54 0 3 1181 1683 118 132 6 chr12 78120209 78120368 -43137162 - RMER17C LTR ERVK -214 196 2 3 1181 822 94 0 0 chr12 78120449 78120566 -43136964 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 3 1181 1305 54 18 0 chr12 78120567 78120733 -43136797 - B2_Mm2 SINE B2 -15 180 12 3 1181 405 0 0 0 chr12 78120733 78120778 -43136752 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1181 286 298 70 39 chr12 78121660 78121789 -43135741 + MIR3 SINE MIR 24 156 -52 3 1181 217 156 0 22 chr12 78121822 78121868 -43135662 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 3 1181 227 234 0 0 chr12 78121871 78121918 -43135612 - B1_Mus1 SINE Alu -92 56 10 3 1181 222 315 0 52 chr12 78121919 78121996 -43135534 - B1F2 SINE Alu -73 76 4 3 1181 669 273 6 47 chr12 78122108 78122277 -43135253 + RSINE1 SINE B4 3 164 -1 3 1181 183 129 0 0 chr12 78122278 78122309 -43135221 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1181 294 295 74 0 chr12 78123130 78123252 -43134278 - MIRb SINE MIR -70 198 68 3 1181 253 217 0 0 chr12 78123298 78123344 -43134186 - ID4_ SINE ID -3 80 35 3 1181 210 300 50 0 chr12 78123391 78123451 -43134079 + L2b LINE L2 3259 3321 -54 3 1181 901 200 122 69 chr12 78124881 78125128 -43132402 - RMER1B Other Other -764 302 43 3 1181 405 0 0 0 chr12 78125156 78125201 -43132329 + (TATG)n Simple_repeat Simple_repeat 4 48 0 3 1181 452 230 71 8 chr12 78125263 78125390 -43132140 + Lx7 LINE L1 7562 7696 0 3 1181 213 209 23 0 chr12 78125488 78125531 -43131999 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1181 724 153 22 22 chr12 78125533 78125713 -43131817 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 1181 262 186 0 0 chr12 78125715 78125758 -43131772 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1181 465 303 69 0 chr12 78126003 78126148 -43131382 - MIRb SINE MIR -61 207 53 3 1181 716 210 47 47 chr12 78127009 78127179 -43130351 + B3A SINE B2 1 170 -28 3 1181 507 157 0 0 chr12 78127203 78127292 -43130238 + GA-rich Low_complexity Low_complexity 3 91 0 3 1181 245 248 35 79 chr12 78127455 78127569 -43129961 - MamRep605 Unknown Unknown -666 210 102 3 1181 972 133 79 5 chr12 78127574 78127807 -43129723 + RMER17C LTR ERVK 1 245 -165 3 1181 1128 128 0 0 chr12 78127807 78127986 -43129544 + (TCC)n Simple_repeat Simple_repeat 2 180 0 3 1181 972 155 83 40 chr12 78127986 78128216 -43129314 + RMER17C LTR ERVK 150 397 -13 3 1181 540 136 0 0 chr12 78128216 78128304 -43129226 + (TC)n Simple_repeat Simple_repeat 2 89 0 3 1181 806 262 37 0 chr12 78128327 78128541 -43128989 - ID_B1 SINE B4 -1 223 2 3 1181 391 265 20 0 chr12 78128577 78128679 -43128851 - PB1D10 SINE Alu -7 110 7 3 1181 333 250 0 0 chr12 78128886 78128954 -43128576 - ID4_ SINE ID -9 74 7 3 1181 573 273 241 51 chr12 78129072 78129322 -43128208 + MLT1D LTR MaLR 15 311 -194 3 1181 1007 178 81 5 chr12 78129322 78129531 -43127999 + URR1B DNA MER1_type 1 225 0 3 1181 573 273 135 64 chr12 78129531 78129707 -43127823 + MLT1D LTR MaLR 312 500 -5 3 1181 1970 130 90 9 chr12 78129816 78130151 -43127379 + ORR1B2 LTR MaLR 1 362 -5 3 1181 886 197 22 76 chr12 78130545 78130590 -43126940 - B3 SINE B2 -2 214 172 3 1181 211 28 27 27 chr12 78130590 78130627 -43126903 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1181 886 197 22 76 chr12 78130627 78130806 -43126724 - B3 SINE B2 -45 171 2 3 1181 437 271 45 8 chr12 78131434 78131568 -43125962 + B1F1 SINE Alu 3 141 -8 3 1181 863 301 86 60 chr12 78131992 78132221 -43125309 - MER2 DNA MER2_type 0 345 111 3 1181 2069 141 15 3 chr12 78132221 78132555 -43124975 + Lx2A1 LINE L1 6669 7006 -2 3 1181 930 132 39 44 chr12 78132560 78132742 -43124788 - B2_Mm2 SINE B2 -14 181 1 3 1181 863 301 86 60 chr12 78132742 78132842 -43124688 - MER2 DNA MER2_type -235 110 1 3 1181 239 220 24 35 chr12 78132842 78132927 -43124603 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 1181 808 241 62 47 chr12 78133081 78133273 -43124257 - B3 SINE B2 0 216 22 3 1181 632 143 0 9 chr12 78133467 78133580 -43123950 + GA-rich Low_complexity Low_complexity 3 114 0 3 1181 241 209 56 69 chr12 78133580 78133591 -43123939 + ID_B1 SINE B4 77 145 -77 3 1181 308 193 17 34 chr12 78133591 78133650 -43123880 + B1_Mus2 SINE Alu 2 59 -88 3 1181 339 317 0 0 chr12 78133656 78133776 -43123754 + (CGG)n Simple_repeat Simple_repeat 2 121 0 3 1181 293 82 0 140 chr12 78133777 78133834 -43123696 + 4.5SRNA scRNA scRNA 40 88 -6 3 1181 676 149 9 0 chr12 78133783 78133890 -43123640 + B1_Mur1 SINE Alu 42 149 0 3 1181 245 27 0 51 chr12 78133890 78133929 -43123601 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 3 1181 583 294 44 0 chr12 78134111 78134291 -43123239 + MER63D DNA AcHobo 16 203 -858 3 1181 324 0 0 0 chr12 78134312 78134348 -43123182 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 3 1181 315 0 0 0 chr12 78134976 78135011 -43122519 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1181 284 314 60 48 chr12 78135290 78135541 -43121989 + RMER15 LTR ERVL 309 562 -13 3 1181 287 180 79 32 chr12 78135687 78135813 -43121717 + RMER17A LTR ERVK 344 475 -276 3 1181 232 283 0 0 chr12 78135908 78135968 -43121562 + (CCA)n Simple_repeat Simple_repeat 2 61 0 3 1181 363 132 0 0 chr12 78135968 78136036 -43121494 + (TCC)n Simple_repeat Simple_repeat 1 68 0 4 1181 901 301 75 49 chr12 78136089 78136160 -43121370 + RLTR12B LTR ERVK 64 124 -404 4 1181 4318 54 13 0 chr12 78136160 78136699 -43120831 - L1_Mus3 LINE L1 -2 6636 6091 4 1181 901 301 75 49 chr12 78136699 78136825 -43120705 + RLTR12B LTR ERVK 125 268 -260 4 1181 531 0 0 0 chr12 78136825 78136884 -43120646 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1181 901 301 75 49 chr12 78136884 78137114 -43120416 + RLTR12B LTR ERVK 269 502 -26 4 1181 1304 158 35 11 chr12 78137346 78137595 -43119935 - L1_Mus3 LINE L1 -254 6384 6183 4 1181 237 185 0 0 chr12 78137825 78137890 -43119640 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1181 716 179 7 0 chr12 78137899 78138050 -43119480 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 4 1181 995 294 50 58 chr12 78138121 78138485 -43119045 + MLT1A0 LTR MaLR 2 362 -3 4 1181 1646 32 11 0 chr12 78138629 78138819 -43118711 - B2_Mm1a SINE B2 -1 192 1 4 1181 288 0 0 0 chr12 78139489 78139521 -43118009 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1181 186 43 0 0 chr12 78139658 78139681 -43117849 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 4 1181 407 254 160 76 chr12 78139683 78139802 -43117728 - ID_B1 SINE B4 -12 212 84 4 1181 252 0 0 0 chr12 78139873 78139901 -43117629 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1181 374 172 178 20 chr12 78139901 78140002 -43117528 - B1F SINE Alu -32 117 1 4 1181 31 44 0 0 chr12 78140010 78140055 -43117475 + AT_rich Low_complexity Low_complexity 1 45 0 4 1181 671 253 19 0 chr12 78140056 78140210 -43117320 - RSINE1 SINE B4 -6 159 3 4 1181 251 316 0 0 chr12 78141277 78141353 -43116177 + ID4 SINE ID 5 80 -3 4 1181 671 264 17 17 chr12 78141685 78141866 -43115664 + B3A SINE B2 2 182 -16 4 1181 238 320 0 13 chr12 78141994 78142070 -43115460 - MER63B DNA AcHobo -48 388 314 4 1181 319 359 8 0 chr12 78142615 78142732 -43114798 - MER102c DNA MER1_type -4 327 210 4 1181 662 250 30 40 chr12 78142744 78142920 -43114610 - ID_B1 SINE B4 -41 251 81 4 1181 35 0 0 0 chr12 78143026 78143061 -43114469 + AT_rich Low_complexity Low_complexity 1 35 0 4 1181 218 277 277 0 chr12 78143066 78143149 -43114381 - PB1D10 SINE Alu -11 106 1 4 1181 226 259 17 0 chr12 78143272 78143330 -43114200 + MER97c DNA MER1_type? 45 103 -987 4 1181 234 156 0 0 chr12 78143338 78143383 -43114147 + C-rich Low_complexity Low_complexity 1 45 0 4 1181 471 252 19 10 chr12 78143391 78143495 -43114035 - B1F1 SINE Alu -44 105 1 4 1181 706 291 127 68 chr12 78143495 78143936 -43113594 + MER97c DNA MER1_type? 112 578 -512 4 1181 527 262 87 0 chr12 78144016 78144142 -43113388 + ID_B1 SINE B4 87 223 -1 4 1181 457 240 146 32 chr12 78144166 78144351 -43113179 + B3 SINE B2 5 210 -6 4 1181 180 0 0 0 chr12 78144359 78144379 -43113151 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1181 963 133 249 0 chr12 78144660 78144833 -43112697 + B3 SINE B2 1 216 0 4 1181 1208 62 0 0 chr12 78144854 78145000 -43112530 + B1_Mm SINE Alu 2 147 0 4 1181 264 59 0 0 chr12 78145000 78145034 -43112496 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1181 361 346 49 67 chr12 78145092 78145315 -43112215 + MER97c DNA MER1_type? 838 1056 -34 4 1181 2239 162 84 5 chr12 78145800 78146179 -43111351 - MTC LTR MaLR -12 409 1 4 1181 410 245 9 36 chr12 78147719 78147829 -43109701 + PB1D10 SINE Alu 1 107 -10 4 1181 651 255 103 39 chr12 78147909 78148113 -43109417 + ID_B1 SINE B4 1 217 -7 4 1181 299 308 58 77 chr12 78148163 78148318 -43109212 + MIR SINE MIR 10 161 -101 4 1181 1847 199 63 8 chr12 78148348 78148725 -43108805 + MTD LTR MaLR 18 406 -13 4 1181 201 94 0 0 chr12 78148807 78148839 -43108691 + (GGA)n Simple_repeat Simple_repeat 1 32 0 4 1181 315 270 0 13 chr12 78148897 78148972 -43108558 + MIRb SINE MIR 184 257 -11 4 1181 922 244 15 0 chr12 78150808 78151005 -43106525 - B3 SINE B2 -16 200 1 4 1181 485 250 8 25 chr12 78151135 78151254 -43106276 - PB1D10 SINE Alu 0 117 1 4 1181 801 267 105 0 chr12 78151458 78151705 -43105825 + B4A SINE B4 2 274 -18 4 1181 387 0 0 0 chr12 78151748 78151791 -43105739 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1181 243 290 0 28 chr12 78152408 78152479 -43105051 - L3 LINE CR1 -820 3669 3601 4 1181 264 294 85 48 chr12 78152525 78152714 -43104816 + L2b LINE L2 2934 3129 -246 4 1181 812 258 12 0 chr12 78152721 78152888 -43104642 + ID_B1 SINE B4 45 213 -11 4 1181 393 292 6 43 chr12 78153138 78153299 -43104231 + L2 LINE L2 1646 1800 -1619 4 1181 199 310 156 31 chr12 78153355 78153515 -43104015 + L2b LINE L2 3247 3426 0 4 1181 197 170 170 0 chr12 78153761 78153814 -43103716 - MIR SINE MIR -66 142 81 4 1181 1263 144 82 0 chr12 78154372 78154580 -43102950 - URR1B DNA MER1_type 0 225 1 4 1181 530 265 201 35 chr12 78155136 78155480 -43102050 - LTR50 LTR ERVL -383 412 12 4 1181 344 286 17 40 chr12 78156203 78156338 -43101192 + MLT1A1 LTR MaLR 225 408 0 4 1181 290 359 0 0 chr12 78156476 78156554 -43100976 + ID_B1 SINE B4 99 176 -48 4 1181 529 323 181 35 chr12 78156616 78157075 -43100455 - LTR78 LTR ERV1 -527 777 252 4 1181 313 362 51 36 chr12 78157094 78157289 -43100241 - LTR78 LTR ERV1 -1106 198 1 4 1181 672 13 0 0 chr12 78157572 78157649 -43099881 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1181 235 203 125 0 chr12 78157717 78157781 -43099749 - ID4_ SINE ID -9 74 3 4 1181 931 209 19 84 chr12 78158224 78158438 -43099092 + B3 SINE B2 3 202 -14 4 1181 28 0 0 0 chr12 78158449 78158477 -43099053 + AT_rich Low_complexity Low_complexity 1 28 0 4 1181 896 72 0 8 chr12 78158517 78158643 -43098887 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 4 1181 195 162 0 0 chr12 78158644 78158681 -43098849 + CT-rich Low_complexity Low_complexity 1 37 0 4 1181 372 241 284 8 chr12 78158682 78158816 -43098714 - ID_B1 SINE B4 -4 220 50 4 1181 285 140 0 0 chr12 78159143 78159200 -43098330 + (GGA)n Simple_repeat Simple_repeat 2 58 0 4 1181 303 263 62 10 chr12 78159553 78159649 -43097881 + LTR16C LTR ERVL 367 467 -22 4 1181 196 317 16 16 chr12 78159943 78160004 -43097526 - MIR SINE MIR -188 74 14 4 1181 205 226 0 117 chr12 78160488 78160548 -43096982 + MIRc SINE MIR 100 156 -112 4 1181 306 50 0 0 chr12 78160644 78160684 -43096846 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 4 1181 946 193 23 59 chr12 78162845 78163065 -43094465 - B3 SINE B2 -3 213 2 4 1181 269 331 40 33 chr12 78163169 78163319 -43094211 - Charlie1a DNA MER1_type -7 1448 1298 4 1181 952 123 0 33 chr12 78163319 78163470 -43094060 - B1_Mus2 SINE Alu 0 147 2 4 1181 1024 276 56 150 chr12 78163470 78163693 -43093837 - Charlie1a DNA MER1_type -189 1266 1067 4 1181 707 253 84 18 chr12 78163693 78163967 -43093563 + B4A SINE B4 1 292 0 4 1181 1024 276 56 150 chr12 78163967 78164355 -43093175 - Charlie1a DNA MER1_type -389 1066 713 4 1181 245 375 10 0 chr12 78164513 78164609 -43092921 - RMER15 LTR ERVL -108 467 371 4 1181 402 283 28 28 chr12 78164656 78164798 -43092732 - Charlie1a DNA MER1_type -741 714 573 4 1181 223 170 0 0 chr12 78164804 78164851 -43092679 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 4 1181 431 239 154 6 chr12 78164851 78165007 -43092523 + MTEb LTR MaLR 191 369 -10 4 1181 430 302 162 28 chr12 78165125 78165513 -43092017 - LTR50 LTR ERVL -330 465 26 4 1181 232 304 183 15 chr12 78165581 78165778 -43091752 - L1MC4a LINE L1 -1711 6171 5942 4 1181 304 231 53 75 chr12 78165803 78165916 -43091614 - MTEb LTR MaLR -6 373 239 4 1181 388 228 61 71 chr12 78166216 78166315 -43091215 - RSINE1 SINE B4 -2 163 66 4 1181 367 211 0 148 chr12 78166521 78166649 -43090881 + MT2B LTR ERVL 156 264 -337 4 1181 918 169 0 13 chr12 78166536 78166686 -43090844 + B1_Mur4 SINE Alu 3 150 0 4 1181 332 248 49 92 chr12 78166760 78166902 -43090628 + RLTR14 LTR ERV1 233 368 -14 4 1181 222 310 0 17 chr12 78166920 78166979 -43090551 - RSINE1 SINE B4 -102 63 6 4 1181 548 146 0 10 chr12 78167096 78167200 -43090330 + CT-rich Low_complexity Low_complexity 3 105 0 4 1181 421 244 113 0 chr12 78167208 78167323 -43090207 - B1F SINE Alu -17 132 5 4 1181 487 314 49 91 chr12 78167353 78167661 -43089869 - L1MC4a LINE L1 -2169 5713 5419 4 1181 226 260 56 24 chr12 78167702 78167828 -43089702 - L1MC4a LINE L1 -2451 5431 5302 4 1181 400 222 65 0 chr12 78167956 78168064 -43089466 + B3A SINE B2 5 119 -79 4 1181 399 41 0 0 chr12 78168082 78168131 -43089399 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1181 578 306 53 8 chr12 78168283 78168530 -43089000 - B4A SINE B4 -19 273 16 4 1181 229 267 0 0 chr12 78169149 78169209 -43088321 - L1MB7 LINE L1 -14 6170 6111 4 1181 299 198 286 0 chr12 78169227 78169318 -43088212 + B1_Mur1 SINE Alu 23 139 -10 4 1181 813 273 98 63 chr12 78169356 78169813 -43087717 - L1MB8 LINE L1 -75 6103 5631 4 1181 289 421 0 0 chr12 78169936 78170095 -43087435 + (CAG)n Simple_repeat Simple_repeat 1 159 0 4 1181 318 242 61 31 chr12 78170382 78170397 -43087133 - B1_Mur4 SINE Alu -49 101 86 4 1181 490 54 27 0 chr12 78170397 78170471 -43087059 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 4 1181 384 202 49 37 chr12 78170471 78170553 -43086977 - B1F2 SINE Alu -66 83 1 4 1181 418 219 17 50 chr12 78170553 78170673 -43086857 - MER2 DNA MER2_type -140 205 90 4 1181 376 216 0 26 chr12 78170668 78170744 -43086786 - ID_B1 SINE B4 -33 191 118 4 1181 274 319 31 21 chr12 78170744 78170764 -43086766 - B1F SINE Alu -36 113 17 4 1181 380 216 9 64 chr12 78171141 78171250 -43086280 - L1M5 LINE L1 -514 5659 5557 4 1181 289 258 0 29 chr12 78171352 78171420 -43086110 - PB1D10 SINE Alu -13 104 39 4 1181 330 167 0 0 chr12 78171435 78171495 -43086035 + CT-rich Low_complexity Low_complexity 2 61 0 4 1181 243 0 0 0 chr12 78171571 78171598 -43085932 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1181 996 120 0 21 chr12 78171601 78171746 -43085784 - B1_Mus1 SINE Alu -6 142 1 4 1181 230 247 0 141 chr12 78171854 78171939 -43085591 - PB1D10 SINE Alu -8 109 37 4 1181 220 261 116 0 chr12 78172366 78172435 -43085095 - RSINE1 SINE B4 -87 78 2 4 1181 206 57 0 54 chr12 78172480 78172517 -43085013 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 1181 247 222 0 18 chr12 78172521 78172576 -43084954 - B1F SINE Alu -89 60 7 5 1181 1850 221 45 5 chr12 78172619 78173020 -43084510 - MTC LTR MaLR 0 421 5 5 1181 323 98 0 0 chr12 78173078 78173129 -43084401 + B1_Mur4 SINE Alu 100 150 0 5 1181 250 111 0 22 chr12 78173149 78173195 -43084335 - B2_Mm2 SINE B2 -14 181 137 5 1181 201 116 47 0 chr12 78173257 78173300 -43084230 + (CTCTG)n Simple_repeat Simple_repeat 3 47 0 5 1181 1270 108 11 0 chr12 78173306 78173482 -43084048 - B2_Mm1t SINE B2 -14 179 2 5 1181 22 0 0 0 chr12 78173499 78173521 -43084009 + AT_rich Low_complexity Low_complexity 1 22 0 5 1181 3068 128 97 15 chr12 78173521 78174039 -43083491 - Lx4A LINE L1 0 7058 6499 5 1181 435 274 19 44 chr12 78174105 78174265 -43083265 + MIR SINE MIR 107 262 0 5 1181 270 0 0 0 chr12 78174979 78175009 -43082521 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1181 374 326 29 7 chr12 78175174 78175310 -43082220 - MTEa LTR MaLR -240 139 1 5 1181 1084 193 155 59 chr12 78175422 78175763 -43081767 - ORR1C2 LTR MaLR -10 374 1 5 1181 1921 306 91 50 chr12 78175855 78176782 -43080748 - MTE-int LTR MaLR -484 1096 132 5 1181 1213 97 37 26 chr12 78177190 78177380 -43080150 - B2_Mm1t SINE B2 0 193 2 5 1181 407 243 12 117 chr12 78177858 78178021 -43079509 + MTE2b LTR MaLR 17 162 -217 5 1181 819 216 80 42 chr12 78178132 78178345 -43079185 + ID_B1 SINE B4 4 224 0 5 1181 231 291 65 90 chr12 78178477 78178632 -43078898 + MLT1A0 LTR MaLR 3 153 -255 5 1181 414 226 87 19 chr12 78178639 78178743 -43078787 + PB1 SINE Alu 2 112 -15 5 1181 334 324 33 13 chr12 78178756 78178906 -43078624 - RMER15 LTR ERVL -15 560 408 5 1181 21 0 0 0 chr12 78179240 78179261 -43078269 + AT_rich Low_complexity Low_complexity 1 21 0 5 1181 247 259 48 26 chr12 78179292 78179395 -43078135 + MLT1A0 LTR MaLR 248 354 -54 5 1181 968 228 4 52 chr12 78180933 78181164 -43076366 + ID_B1 SINE B4 5 224 0 5 1181 355 280 17 0 chr12 78182052 78182154 -43075376 - PB1D10 SINE Alu -5 115 3 5 1181 240 205 0 133 chr12 78182484 78182574 -43074956 - PB1D10 SINE Alu -16 101 24 5 1181 1547 166 35 132 chr12 78183051 78183137 -43074393 + ORR1C2 LTR MaLR 1 72 -312 5 1181 6009 44 18 9 chr12 78183137 78183876 -43073654 + L1Md_F2 LINE L1 5837 6581 -1 5 1181 1547 166 35 132 chr12 78183876 78183995 -43073535 + ORR1C2 LTR MaLR 73 173 -211 5 1181 594 0 0 0 chr12 78183995 78184061 -43073469 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 5 1181 1547 166 35 132 chr12 78184061 78184277 -43073253 + ORR1C2 LTR MaLR 174 381 -3 5 1181 498 46 0 0 chr12 78184516 78184581 -43072949 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1181 297 0 0 0 chr12 78184804 78184837 -43072693 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1181 505 248 7 99 chr12 78185044 78185196 -43072334 + ID_B1 SINE B4 78 215 -9 5 1181 372 225 0 0 chr12 78185202 78185273 -43072257 + ID4 SINE ID 2 72 -11 5 1181 755 21 11 0 chr12 78185275 78185368 -43072162 + (CA)n Simple_repeat Simple_repeat 2 95 0 5 1181 366 340 82 13 chr12 78185415 78185731 -43071799 + L1M5 LINE L1 4620 4957 -1189 5 1181 289 378 0 19 chr12 78185906 78186065 -43071465 + (CATA)n Simple_repeat Simple_repeat 2 157 0 5 1181 417 310 110 60 chr12 78186065 78186365 -43071165 + L1M5 LINE L1 4922 5236 -910 5 1181 591 273 137 30 chr12 78186376 78186728 -43070802 + L1M5 LINE L1 5292 5684 -760 5 1181 330 222 98 137 chr12 78186778 78186961 -43070569 - MLT2B4 LTR ERVL -3 553 378 5 1181 403 219 130 32 chr12 78186967 78187090 -43070440 - MLT2B4 LTR ERVL -288 268 134 5 1181 1360 245 58 70 chr12 78187300 78187552 -43069978 - ERVL-B4-int LTR ERVL -117 5597 5365 5 1181 504 129 0 0 chr12 78187552 78187653 -43069877 + (TATG)n Simple_repeat Simple_repeat 2 102 0 5 1181 1360 245 58 70 chr12 78187653 78187897 -43069633 - ERVL-B4-int LTR ERVL -350 5364 5107 5 1181 1407 124 220 3 chr12 78187940 78188222 -43069308 - ORR1B2 LTR MaLR -8 359 17 5 1181 1024 116 7 0 chr12 78188240 78188386 -43069144 - B1_Mus1 SINE Alu 0 148 2 5 1181 727 263 117 20 chr12 78188417 78188665 -43068865 - ERVL-B4-int LTR ERVL -652 5105 4834 5 1181 231 274 53 40 chr12 78189064 78189140 -43068390 + MTEb LTR MaLR 294 370 -9 5 1181 302 167 0 16 chr12 78189248 78189309 -43068221 - ORR1D1 LTR MaLR -287 87 28 5 1181 319 276 101 16 chr12 78189804 78189933 -43067597 + ERVL-B4-int LTR ERVL 2124 2263 -3404 5 1181 288 285 0 35 chr12 78189963 78190062 -43067468 + ID4 SINE ID 7 99 -53 5 1181 585 252 60 40 chr12 78190104 78190253 -43067277 + RSINE1 SINE B4 12 163 -2 5 1181 252 86 0 0 chr12 78190334 78190369 -43067161 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 5 1181 818 232 0 47 chr12 78190370 78190560 -43066970 + ERVL-B4-int LTR ERVL 2310 2490 -3224 5 1181 1122 83 14 0 chr12 78190574 78190719 -43066811 + B1_Mus2 SINE Alu 1 147 0 5 1181 224 36 51 68 chr12 78190735 78190794 -43066736 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 5 1181 309 309 85 0 chr12 78190823 78190917 -43066613 + ERVL-B4-int LTR ERVL 2896 2997 -2760 5 1181 1533 297 35 12 chr12 78190949 78191433 -43066097 + ERVL-B4-int LTR ERVL 3074 3568 -2189 5 1181 401 288 36 0 chr12 78191436 78191547 -43065983 + PB1D10 SINE Alu 3 117 0 5 1181 1600 299 57 32 chr12 78191612 78192262 -43065268 + ERVL-B4-int LTR ERVL 3523 4188 -1526 5 1181 698 43 0 21 chr12 78192389 78192484 -43065046 + (GGGAGA)n Simple_repeat Simple_repeat 5 97 0 5 1181 256 283 95 57 chr12 78192626 78192731 -43064799 - ERVL-B4-int LTR ERVL -3524 2190 2082 5 1181 445 309 27 45 chr12 78192797 78193106 -43064424 + RLTR15 LTR ERVK 48 334 -25 5 1181 288 285 76 8 chr12 78194687 78194818 -43062712 - LTR48 LTR ERV1 0 644 505 5 1181 817 225 191 55 chr12 78194807 78195263 -43062267 - LTR48 LTR ERV1 -247 540 8 5 1181 647 222 35 7 chr12 78195607 78195752 -43061778 - B1F SINE Alu 0 149 1 5 1181 751 312 25 0 chr12 78195906 78196108 -43061422 - ID_B1 SINE B4 -16 208 2 5 1181 364 284 57 57 chr12 78196458 78196615 -43060915 - MamGypLTR1a LTR Gypsy -607 177 21 5 1181 351 0 0 0 chr12 78197265 78197304 -43060226 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 1181 1258 13 0 0 chr12 78197305 78197460 -43060070 - B2_Mm1a SINE B2 -38 155 1 5 1181 516 72 0 0 chr12 78197798 78197867 -43059663 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1181 410 262 0 36 chr12 78198084 78198195 -43059335 + PB1D10 SINE Alu 11 117 0 5 1181 372 216 66 38 chr12 78198373 78198479 -43059051 - MTB_Mm LTR MaLR -298 109 1 5 1181 282 238 47 19 chr12 78198508 78198615 -43058915 - Lx7 LINE L1 -18 7678 7569 5 1181 1755 241 34 30 chr12 78198670 78199140 -43058390 - Lx7 LINE L1 -343 7353 6882 5 1181 182 37 37 0 chr12 78200387 78200414 -43057116 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 5 1181 633 158 0 247 chr12 78200415 78200609 -43056921 - B1_Mur2 SINE Alu -1 148 3 5 1181 330 242 0 0 chr12 78200756 78200818 -43056712 + B1F1 SINE Alu 3 64 -85 5 1181 1363 63 14 82 chr12 78201054 78201261 -43056269 - B2_Mm2 SINE B2 -1 194 2 5 1181 532 250 0 0 chr12 78201447 78201551 -43055979 + ID_B1 SINE B4 114 217 -7 5 1181 652 292 134 8 chr12 78202195 78202433 -43055097 - MLT1A0 LTR MaLR -97 268 1 5 1181 369 0 0 0 chr12 78202730 78202771 -43054759 + (TAA)n Simple_repeat Simple_repeat 3 43 0 5 1181 397 268 16 0 chr12 78202792 78202915 -43054615 - MIR SINE MIR 0 262 138 5 1181 297 0 0 0 chr12 78202929 78202962 -43054568 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1181 198 103 0 0 chr12 78202962 78202990 -43054540 + (CACG)n Simple_repeat Simple_repeat 4 32 0 5 1181 236 164 0 32 chr12 78202990 78203053 -43054477 + (CAGAGA)n Simple_repeat Simple_repeat 2 62 0 5 1181 438 254 43 9 chr12 78203061 78203176 -43054354 - RSINE1 SINE B4 -45 120 2 5 1181 487 289 21 14 chr12 78203176 78203320 -43054210 - MIR SINE MIR -112 150 6 5 1181 325 208 117 0 chr12 78203637 78203714 -43053816 + B1_Mur2 SINE Alu 64 149 0 5 1181 517 0 0 0 chr12 78203806 78203870 -43053660 - L1Md_A LINE L1 0 6582 6519 5 1181 5987 120 5 2 chr12 78204126 78205022 -43052508 + L1_Mur2 LINE L1 3909 4806 -1071 5 1181 3937 207 15 13 chr12 78205409 78206274 -43051256 + Lx2B LINE L1 6129 6995 -5 5 1181 629 225 58 0 chr12 78206325 78206463 -43051067 - B1_Mur1 SINE Alu -1 148 3 5 1181 466 259 52 22 chr12 78206483 78206617 -43050913 + B1F SINE Alu 1 138 -11 5 1181 504 221 13 7 chr12 78206907 78207062 -43050468 + GA-rich Low_complexity Low_complexity 1 156 0 5 1181 333 0 0 0 chr12 78207988 78208025 -43049505 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1181 1008 293 45 73 chr12 78208494 78208702 -43048828 - MLT1B LTR MaLR -3 387 193 5 1181 222 37 0 0 chr12 78208702 78208729 -43048801 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1181 1008 293 45 73 chr12 78208729 78208742 -43048788 - MLT1B LTR MaLR -198 192 180 5 1181 819 224 12 12 chr12 78208742 78208905 -43048625 - RSINE1 SINE B4 0 165 3 5 1181 1008 293 45 73 chr12 78208905 78209080 -43048450 - MLT1B LTR MaLR -211 179 2 5 1181 288 0 0 0 chr12 78209249 78209281 -43048249 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1181 863 226 54 25 chr12 78209856 78210060 -43047470 + B3 SINE B2 1 210 -6 5 1181 379 250 17 67 chr12 78210256 78210376 -43047154 + PB1D10 SINE Alu 3 116 -1 5 1181 1181 61 0 0 chr12 78210423 78210570 -43046960 - B1_Mus1 SINE Alu 0 148 2 5 1181 1321 296 133 11 chr12 78210641 78211161 -43046369 - MTE-int LTR MaLR -230 1350 768 5 1181 2784 150 41 61 chr12 78211164 78211753 -43045777 + RLTR20A2 LTR ERVK 2 578 0 5 1181 2070 156 98 4 chr12 78211924 78212409 -43045121 - RMER4B LTR ERVK 0 585 17 5 1181 690 305 111 30 chr12 78212457 78212485 -43045045 - B4 SINE B4 0 292 270 5 1181 213 39 0 0 chr12 78212485 78212511 -43045019 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1181 690 305 111 30 chr12 78212511 78212752 -43044778 - B4 SINE B4 -23 269 1 5 1181 780 321 141 17 chr12 78212813 78213231 -43044299 - MTE-int LTR MaLR -1110 470 1 5 1181 487 264 49 54 chr12 78213339 78213577 -43043953 - ORR1E LTR MaLR -138 232 1 5 1181 903 255 5 0 chr12 78213639 78213827 -43043703 + ID_B1 SINE B4 2 190 -34 5 1181 211 188 20 20 chr12 78213959 78214008 -43043522 + PB1D10 SINE Alu 48 96 -21 5 1181 284 340 18 80 chr12 78214149 78214312 -43043218 + LTR79 LTR ERVL 38 190 -337 5 1181 216 162 0 0 chr12 78214779 78214816 -43042714 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1181 1716 184 35 43 chr12 78214991 78215233 -43042297 + ORR1D1 LTR MaLR 2 250 -124 5 1181 2895 106 19 49 chr12 78215233 78215700 -43041830 + RLTR11B LTR ERVK 1 453 0 5 1181 1716 184 35 43 chr12 78215700 78215832 -43041698 + ORR1D1 LTR MaLR 251 373 -1 5 1181 180 0 0 0 chr12 78216114 78216134 -43041396 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1181 1364 207 29 23 chr12 78216387 78216693 -43040837 + MTD LTR MaLR 1 308 -111 6 1181 306 197 84 0 chr12 78217040 78217111 -43040419 - ID4 SINE ID -3 80 4 6 1181 231 150 0 0 chr12 78217111 78217151 -43040379 - Tigger13a DNA MER2_type -263 508 469 6 1181 7241 181 56 8 chr12 78217176 78218726 -43038804 - Lx5 LINE L1 -34 7016 5401 6 1181 5508 140 19 18 chr12 78218711 78219540 -43037990 + L1_Mur2 LINE L1 4465 5297 -580 6 1181 5551 21 2 0 chr12 78219540 78220170 -43037360 + L1Md_A LINE L1 5951 6581 -1 6 1181 5508 140 19 18 chr12 78220170 78220273 -43037257 + L1_Mur2 LINE L1 5298 5398 -479 6 1181 578 316 80 27 chr12 78220303 78220602 -43036928 - Tigger13a DNA MER2_type -372 399 85 6 1181 209 216 0 38 chr12 78220732 78220785 -43036745 + CT-rich Low_complexity Low_complexity 4 54 0 6 1181 255 291 78 43 chr12 78220788 78220903 -43036627 - B1_Mur3 SINE Alu -16 133 15 6 1181 333 0 0 0 chr12 78221251 78221288 -43036242 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1181 429 20 0 0 chr12 78221289 78221339 -43036191 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1181 2123 291 62 39 chr12 78221882 78222732 -43034798 + Charlie1a DNA MER1_type 1 870 -585 6 1181 605 264 19 13 chr12 78222900 78223057 -43034473 + RSINE1 SINE B4 2 159 -6 6 1181 875 219 70 0 chr12 78223089 78223290 -43034240 + B3 SINE B2 2 216 0 6 1181 410 257 115 25 chr12 78223290 78223515 -43034015 + Charlie1a DNA MER1_type 953 1196 -259 6 1181 518 252 13 20 chr12 78223515 78223665 -43033865 + RSINE1 SINE B4 3 151 -14 6 1181 410 257 115 25 chr12 78223665 78223682 -43033848 + Charlie1a DNA MER1_type 1197 1216 -239 6 1181 315 0 0 0 chr12 78223802 78223837 -43033693 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1181 429 95 0 0 chr12 78223882 78223945 -43033585 + (TATG)n Simple_repeat Simple_repeat 2 64 0 6 1181 241 283 0 0 chr12 78223953 78224006 -43033524 - RSINE1 SINE B4 -29 136 84 6 1181 241 302 65 72 chr12 78224079 78224218 -43033312 - B1F1 SINE Alu -11 138 1 6 1181 235 152 22 0 chr12 78225569 78225615 -43031915 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1181 685 164 109 0 chr12 78225767 78225895 -43031635 - B1_Mur4 SINE Alu -2 148 7 6 1181 433 252 79 61 chr12 78225895 78225932 -43031598 - ID_B1 SINE B4 -2 222 55 6 1181 241 346 75 19 chr12 78226097 78226256 -43031274 + MLT1J LTR MaLR 42 209 -303 6 1181 1136 209 35 20 chr12 78226284 78226538 -43030992 + MTEa LTR MaLR 3 260 -119 6 1181 393 309 69 88 chr12 78226543 78226906 -43030624 + MLT1B LTR MaLR 14 369 -98 6 1181 237 290 0 0 chr12 78227055 78227117 -43030413 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1181 517 223 46 0 chr12 78227158 78227288 -43030242 + B1F SINE Alu 1 136 -13 6 1181 198 0 0 0 chr12 78227288 78227310 -43030220 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 6 1181 349 281 42 0 chr12 78227595 78227691 -43029839 + B1F1 SINE Alu 1 100 -49 6 1181 1130 75 0 0 chr12 78227709 78227855 -43029675 - B1_Mus1 SINE Alu 0 148 3 6 1181 938 202 6 11 chr12 78227856 78228036 -43029494 - MTEa LTR MaLR -200 179 1 6 1181 381 219 116 18 chr12 78228351 78228461 -43029069 - PB1D10 SINE Alu -2 125 5 6 1181 348 313 28 63 chr12 78228466 78228609 -43028921 - MER20 DNA MER1_type -80 139 2 6 1181 270 0 0 0 chr12 78229109 78229139 -43028391 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1181 667 140 152 43 chr12 78229288 78229452 -43028078 + ORR1D1 LTR MaLR 2 183 -191 6 1181 274 98 39 0 chr12 78229456 78229507 -43028023 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1181 891 204 0 11 chr12 78229517 78229697 -43027833 + ORR1D1 LTR MaLR 167 344 -30 6 1181 2850 140 76 18 chr12 78229697 78230003 -43027527 + RMER4B LTR ERVK 1 331 -254 6 1181 2456 114 0 72 chr12 78230003 78230390 -43027140 - RLTR10D LTR ERVK 0 359 1 6 1181 2850 140 76 18 chr12 78230390 78230636 -43026894 + RMER4B LTR ERVK 332 585 0 6 1181 263 254 60 0 chr12 78230831 78230898 -43026632 + ID4 SINE ID 3 73 -10 6 1181 54 56 0 0 chr12 78231985 78232074 -43025456 + AT_rich Low_complexity Low_complexity 1 89 0 6 1181 979 263 122 14 chr12 78232343 78232705 -43024825 + MTD LTR MaLR 5 405 -14 6 1181 292 197 287 16 chr12 78233174 78233303 -43024227 - MamRep564 Unknown Unknown -132 225 62 6 1181 372 224 0 0 chr12 78233387 78233485 -43024045 + GA-rich Low_complexity Low_complexity 3 100 0 6 1181 297 135 0 0 chr12 78233484 78233536 -43023994 + (ATGGTG)n Simple_repeat Simple_repeat 4 55 0 6 1181 471 168 248 0 chr12 78233711 78233824 -43023706 - RMER1B Other Other -547 519 379 6 1181 703 252 25 0 chr12 78234179 78234338 -43023192 - RSINE1 SINE B4 0 165 3 6 1181 239 175 0 0 chr12 78235276 78235316 -43022214 + ID_B1 SINE B4 81 120 -104 6 1181 278 272 81 87 chr12 78235661 78235846 -43021684 + RLTR23 LTR ERV1 247 430 0 6 1181 289 239 98 0 chr12 78235849 78235941 -43021589 + B1F SINE Alu 49 149 0 6 1181 410 167 0 12 chr12 78235968 78236053 -43021477 + GA-rich Low_complexity Low_complexity 2 85 0 6 1181 295 331 59 22 chr12 78236490 78236626 -43020904 - MIRm SINE MIR -122 154 14 6 1181 207 296 173 6 chr12 78237383 78237556 -43019974 + MIRc SINE MIR 9 210 -58 6 1181 213 39 0 0 chr12 78237578 78237604 -43019926 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1181 335 78 20 0 chr12 78237758 78237809 -43019721 + (AGGGGG)n Simple_repeat Simple_repeat 6 57 0 6 1181 290 252 134 63 chr12 78237843 78237970 -43019560 - ORR1E LTR MaLR -221 138 3 6 1181 203 204 19 0 chr12 78238105 78238159 -43019371 + CT-rich Low_complexity Low_complexity 5 59 0 6 1181 599 85 32 0 chr12 78239329 78239423 -43018107 - B1_Mus2 SINE Alu 0 147 51 6 1181 331 297 67 94 chr12 78239423 78239552 -43017978 - ID_B1 SINE B4 0 224 8 6 1181 1219 56 0 0 chr12 78240410 78240570 -43016960 + B2_Mm1a SINE B2 1 160 -33 6 1181 201 74 0 0 chr12 78240570 78240597 -43016933 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 6 1181 362 170 170 0 chr12 78240661 78240755 -43016775 - ID_B1 SINE B4 -16 208 99 6 1181 429 81 0 0 chr12 78240765 78240827 -43016703 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1181 440 306 170 27 chr12 78240925 78241184 -43016346 + MER89 LTR ERV1 194 489 -70 6 1181 207 108 0 26 chr12 78242156 78242194 -43015336 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 6 1181 309 260 124 10 chr12 78242207 78242304 -43015226 - ID_B1 SINE B4 -2 222 115 6 1181 298 155 0 17 chr12 78242309 78242368 -43015162 - B3 SINE B2 -154 62 5 6 1181 180 0 0 0 chr12 78242943 78242963 -43014567 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1181 2238 115 29 81 chr12 78243421 78243839 -43013691 + RMER13B LTR ERVK 1 396 -512 6 1181 961 56 0 0 chr12 78243837 78243962 -43013568 + B1_Mus1 SINE Alu 24 148 0 6 1181 207 0 0 0 chr12 78243995 78244018 -43013512 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 6 1181 714 223 42 51 chr12 78244032 78244268 -43013262 + RMER13B LTR ERVK 384 617 -291 6 1181 216 0 0 0 chr12 78244827 78244851 -43012679 + (CAA)n Simple_repeat Simple_repeat 2 25 0 6 1181 24 0 0 0 chr12 78245672 78245696 -43011834 + AT_rich Low_complexity Low_complexity 1 24 0 6 1181 377 297 23 38 chr12 78246247 78246380 -43011150 - RSINE1 SINE B4 0 165 35 6 1181 195 114 0 0 chr12 78246412 78246447 -43011083 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 1181 1465 88 5 0 chr12 78246448 78246663 -43010867 + MTB_Mm LTR MaLR 3 218 -189 6 1181 699 229 137 0 chr12 78246663 78246846 -43010684 - B3 SINE B2 -6 210 3 6 1181 3157 59 13 3 chr12 78247222 78247614 -43009916 - MTA_Mm LTR MaLR 0 396 1 6 1181 716 141 98 30 chr12 78247926 78248058 -43009472 + B1_Mus2 SINE Alu 1 141 -6 6 1181 398 300 27 27 chr12 78248191 78248376 -43009154 + L1MA4 LINE L1 5746 5930 -370 6 1181 584 266 8 0 chr12 78248406 78248534 -43008996 + B3A SINE B2 2 130 -68 6 1181 315 0 0 0 chr12 78248559 78248594 -43008936 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1181 442 289 96 0 chr12 78248619 78248754 -43008776 + ID_B1 SINE B4 77 224 0 6 1181 183 212 0 0 chr12 78249297 78249330 -43008200 - MIR3 SINE MIR -48 160 128 6 1181 982 58 7 35 chr12 78249596 78249740 -43007790 + B1_Mur4 SINE Alu 11 150 0 6 1181 464 252 10 0 chr12 78249783 78249882 -43007648 + PB1 SINE Alu 1 100 -27 6 1181 608 118 10 0 chr12 78249916 78249928 -43007602 + (GAAA)n Simple_repeat Simple_repeat 3 14 0 6 147 2577 42 0 0 chr12 78249928 78250324 -43007206 + L1Md_F3 LINE L1 6278 6584 0 6 1182 1683 31 0 0 chr12 78250365 78250556 -43006974 - B2_Mm1a SINE B2 -1 192 2 6 1182 539 137 177 46 chr12 78250770 78250900 -43006630 + B1_Mus1 SINE Alu 1 147 -1 6 1182 225 146 49 0 chr12 78251303 78251344 -43006186 + ID SINE ID 16 58 -166 6 1182 1497 53 21 5 chr12 78251409 78251600 -43005930 + B2_Mm2 SINE B2 2 195 0 6 1182 1149 58 0 0 chr12 78251647 78251786 -43005744 + B1_Mus1 SINE Alu 1 139 -9 6 1182 299 25 25 0 chr12 78251887 78251927 -43005603 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1182 611 316 19 39 chr12 78251958 78252165 -43005365 - B4A SINE B4 0 292 90 6 1182 223 245 101 28 chr12 78253070 78253179 -43004351 - PB1D10 SINE Alu 0 117 1 6 1182 647 117 45 0 chr12 78253431 78253773 -43003757 + (TCTA)n Simple_repeat Simple_repeat 1 357 0 6 1182 525 206 21 27 chr12 78254249 78254376 -43003154 + B1F SINE Alu 1 129 -20 6 1182 349 302 47 42 chr12 78254390 78254580 -43002950 + ID_B1 SINE B4 3 193 -31 6 1182 222 205 0 0 chr12 78254895 78254934 -43002596 - ID4_ SINE ID -43 40 2 6 1182 234 0 0 0 chr12 78255604 78255630 -43001900 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1182 251 357 18 72 chr12 78257228 78257394 -43000136 + MIRb SINE MIR 4 160 -108 7 1182 952 132 241 0 chr12 78257420 78257594 -42999936 + B3 SINE B2 1 216 0 7 1182 734 235 31 68 chr12 78257610 78257802 -42999728 - B3A SINE B2 -11 187 3 7 1182 212 290 32 0 chr12 78257919 78257981 -42999549 + 7SLRNA srpRNA srpRNA 21 84 -230 7 1182 292 279 97 16 chr12 78259641 78259765 -42997765 - MIRb SINE MIR -120 148 15 7 1182 470 287 234 34 chr12 78259905 78260311 -42997219 - Lx8 LINE L1 0 7473 6987 7 1182 25402 60 65 158 chr12 78260299 78265970 -42991560 + L1Md_F3 LINE L1 449 5586 -297 7 1182 8629 23 6 8 chr12 78265970 78266970 -42990560 + L1Md_F3 LINE L1 5587 6584 0 7 1182 25 65 0 0 chr12 78267028 78267074 -42990456 + AT_rich Low_complexity Low_complexity 1 46 0 7 1182 297 0 0 0 chr12 78267106 78267139 -42990391 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1182 1457 285 47 39 chr12 78267139 78267446 -42990084 - Lx8 LINE L1 -521 6952 6643 7 1182 4874 152 38 79 chr12 78267446 78268092 -42989438 - RMER19B LTR ERVK 0 902 250 7 1182 1153 55 7 14 chr12 78268092 78268239 -42989291 + B1_Mus1 SINE Alu 3 148 0 7 1182 4874 152 38 79 chr12 78268239 78268532 -42988998 - RMER19B LTR ERVK -653 249 1 7 1182 1457 285 47 39 chr12 78268532 78268735 -42988795 - Lx8 LINE L1 -831 6642 6438 7 1182 343 286 0 42 chr12 78268737 78268832 -42988698 - PB1D10 SINE Alu 0 117 27 7 1182 526 230 239 11 chr12 78269069 78269245 -42988285 - B3 SINE B2 0 216 1 7 1182 260 234 99 49 chr12 78269262 78269343 -42988187 + PB1D10 SINE Alu 24 108 -9 7 1182 241 254 15 0 chr12 78269343 78269410 -42988120 + GA-rich Low_complexity Low_complexity 1 68 0 7 1182 23 54 0 0 chr12 78269410 78269447 -42988083 + AT_rich Low_complexity Low_complexity 1 37 0 7 1182 274 256 0 0 chr12 78269471 78269543 -42987987 + B1F SINE Alu 74 140 -9 7 1182 219 263 53 0 chr12 78269559 78269616 -42987914 + ID4 SINE ID 8 67 -16 7 1182 222 124 5 111 chr12 78269666 78269865 -42987665 + (CAGGA)n Simple_repeat Simple_repeat 1 178 0 7 1182 326 126 6 106 chr12 78269878 78270200 -42987330 + (CAGGA)n Simple_repeat Simple_repeat 1 289 0 7 1182 665 163 16 0 chr12 78270797 78270926 -42986604 + CT-rich Low_complexity Low_complexity 4 134 0 7 1182 200 206 0 0 chr12 78270928 78270962 -42986568 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 1182 261 330 27 27 chr12 78271023 78271135 -42986395 - B1F SINE Alu -18 131 20 7 1182 603 0 0 0 chr12 78272876 78272943 -42984587 + (GAGAA)n Simple_repeat Simple_repeat 1 67 0 7 1182 708 144 17 0 chr12 78273219 78273337 -42984193 + B3A SINE B2 3 122 -76 7 1182 432 227 21 0 chr12 78273408 78273505 -42984025 + B3 SINE B2 1 99 -117 7 1182 742 218 19 13 chr12 78273512 78273670 -42983860 - RMER1C Other Other -117 1225 1067 7 1182 23 33 0 0 chr12 78273810 78273840 -42983690 + AT_rich Low_complexity Low_complexity 1 30 0 7 1182 202 195 0 0 chr12 78274311 78274352 -42983178 + CT-rich Low_complexity Low_complexity 1 41 0 7 1182 257 182 60 15 chr12 78274354 78274421 -42983109 + RMER21A LTR ERV1 617 686 -261 7 1182 1126 70 0 0 chr12 78274618 78274760 -42982770 + B1_Mus1 SINE Alu 2 143 -5 7 1182 524 155 19 0 chr12 78274763 78274866 -42982664 + (CATATA)n Simple_repeat Simple_repeat 5 109 0 7 1182 489 256 110 79 chr12 78274915 78275165 -42982365 + LTR48 LTR ERV1 133 556 -231 7 1182 589 130 270 0 chr12 78275165 78275280 -42982250 + B1_Mur2 SINE Alu 4 149 0 7 1182 489 250 86 137 chr12 78275280 78275519 -42982011 + LTR48 LTR ERV1 557 781 -6 7 1182 714 96 0 0 chr12 78275627 78275731 -42981799 + (TC)n Simple_repeat Simple_repeat 1 104 0 7 1182 237 145 32 16 chr12 78276154 78276217 -42981313 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 7 1182 434 329 58 27 chr12 78276498 78276757 -42980773 - ORR1E LTR MaLR -7 352 86 7 1182 182 309 58 14 chr12 78276793 78276862 -42980668 - MIRb SINE MIR -161 107 36 7 1182 218 281 30 30 chr12 78277266 78277332 -42980198 + PB1D10 SINE Alu 29 94 -23 7 1182 21 36 0 0 chr12 78277728 78277756 -42979774 + AT_rich Low_complexity Low_complexity 1 28 0 7 1182 324 48 0 0 chr12 78278308 78278350 -42979180 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 7 1182 717 73 0 0 chr12 78278635 78278731 -42978799 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 7 1182 948 41 8 0 chr12 78279742 78279865 -42977665 + B1_Mus2 SINE Alu 23 146 -1 7 1182 268 60 19 39 chr12 78279870 78279922 -42977608 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 7 1182 297 0 0 0 chr12 78280036 78280069 -42977461 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1182 360 88 0 0 chr12 78280735 78280792 -42976738 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 7 1182 534 301 226 18 chr12 78281193 78281742 -42975788 - L2b LINE L2 -227 3199 2541 7 1182 839 221 138 0 chr12 78281854 78282049 -42975481 + ID_B1 SINE B4 3 224 0 7 1182 263 298 53 11 chr12 78282102 78282197 -42975333 + B1F1 SINE Alu 1 99 -50 7 1182 491 220 61 107 chr12 78282271 78282422 -42975108 + RMER10A LTR ERVL 122 261 -181 7 1182 867 44 21 21 chr12 78282422 78282562 -42974968 + (TTCTC)n Simple_repeat Simple_repeat 5 144 0 7 1182 491 220 61 107 chr12 78282562 78282591 -42974939 + RMER10A LTR ERVL 262 289 -153 7 1182 1493 11 0 22 chr12 78282591 78282775 -42974755 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 7 1182 491 220 61 107 chr12 78282775 78282903 -42974627 + RMER10A LTR ERVL 290 417 -25 7 1182 252 298 123 19 chr12 78283115 78283221 -42974309 - PB1D10 SINE Alu 0 117 1 7 1182 333 340 21 0 chr12 78283273 78283414 -42974116 + MLT1L LTR MaLR 398 541 -69 7 1182 388 234 10 73 chr12 78283441 78283560 -42973970 + PB1 SINE Alu 16 119 -1 7 1182 472 218 30 0 chr12 78283643 78283744 -42973786 - PB1D9 SINE Alu 0 120 17 7 1182 1194 204 231 38 chr12 78284348 78284857 -42972673 + MT2A LTR ERVL 2 523 -10 7 1182 239 341 23 0 chr12 78285511 78285599 -42971931 + ORR1E LTR MaLR 3 92 -267 7 1182 736 216 7 0 chr12 78285621 78285769 -42971761 + B1_Mur1 SINE Alu 1 149 0 7 1182 237 278 96 75 chr12 78285893 78286170 -42971360 + ORR1E LTR MaLR 85 366 -8 7 1182 231 288 75 8 chr12 78286502 78286635 -42970895 - L1MC LINE L1 -1997 5885 5744 7 1182 1429 245 78 3 chr12 78286706 78287091 -42970439 - MTD LTR MaLR 0 419 6 7 1182 250 321 0 24 chr12 78287300 78287383 -42970147 - ID4_ SINE ID -1 82 2 7 1182 248 377 9 0 chr12 78287393 78287507 -42970023 - PB1D10 SINE Alu -2 115 1 7 1182 29 28 0 0 chr12 78287602 78287638 -42969892 + AT_rich Low_complexity Low_complexity 1 36 0 7 1182 568 233 163 22 chr12 78287723 78287907 -42969623 - B3 SINE B2 0 216 7 7 1182 219 88 0 0 chr12 78287961 78287995 -42969535 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1182 723 287 148 0 chr12 78288068 78288312 -42969218 - Lx8 LINE L1 -194 7279 7000 7 1182 255 358 23 61 chr12 78288454 78288544 -42968986 - RMER4A LTR ERVK -253 213 131 7 1182 413 36 0 18 chr12 78288544 78288600 -42968930 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1182 255 358 23 61 chr12 78288600 78288723 -42968807 - RMER4A LTR ERVK -336 130 8 7 1182 368 350 53 22 chr12 78289448 78289676 -42967854 - MLT1L LTR MaLR -224 386 152 7 1182 1004 239 48 138 chr12 78289703 78290101 -42967429 - MTE2a LTR MaLR -17 362 1 7 1182 296 247 21 13 chr12 78290998 78291089 -42966441 + B1_Mur1 SINE Alu 53 147 -2 7 1182 884 266 70 63 chr12 78291109 78291522 -42966008 + L1MA6 LINE L1 5881 6296 -4 7 1182 180 0 0 0 chr12 78291612 78291632 -42965898 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 7 1182 432 0 0 0 chr12 78292090 78292138 -42965392 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1182 209 33 33 0 chr12 78292358 78292388 -42965142 + (TTG)n Simple_repeat Simple_repeat 2 32 0 7 1182 287 204 0 0 chr12 78293154 78293203 -42964327 - ID4 SINE ID -14 69 21 7 1182 254 167 135 27 chr12 78293311 78293385 -42964145 - ID_B1 SINE B4 -1 223 142 7 1182 309 26 0 0 chr12 78293388 78293426 -42964104 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 7 1182 1213 35 7 0 chr12 78293427 78293572 -42963958 - B1_Mm SINE Alu -1 146 1 7 1182 254 167 0 0 chr12 78293572 78293614 -42963916 - ID_B1 SINE B4 -67 157 116 7 1182 278 316 0 50 chr12 78293647 78293747 -42963783 - ID_B1 SINE B4 -113 111 17 7 1182 486 221 181 0 chr12 78294102 78294251 -42963279 + MER115 DNA Tip100 499 674 -19 7 1182 210 304 0 0 chr12 78294299 78294355 -42963175 - ID SINE ID -141 83 28 7 1182 210 71 0 0 chr12 78295460 78295488 -42962042 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1182 414 0 0 0 chr12 78295664 78295710 -42961820 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1182 236 260 37 99 chr12 78295731 78295812 -42961718 - B1F2 SINE Alu -65 84 9 7 1182 243 188 0 59 chr12 78296729 78296780 -42960750 - ID_B1 SINE B4 0 224 177 7 1182 452 284 0 0 chr12 78296736 78296838 -42960692 - PB1D10 SINE Alu -7 110 9 7 1182 180 0 0 0 chr12 78297679 78297699 -42959831 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1182 467 198 113 0 chr12 78297701 78297807 -42959723 - PB1D7 SINE Alu 0 120 3 7 1182 753 12 0 0 chr12 78298032 78298118 -42959412 + (CACAG)n Simple_repeat Simple_repeat 3 88 0 7 1182 180 0 0 0 chr12 78299004 78299024 -42958506 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1182 268 254 99 0 chr12 78299886 78299957 -42957573 - PB1D10 SINE Alu -42 107 30 7 1182 327 277 58 68 chr12 78300319 78300509 -42957021 + MIR SINE MIR 65 252 -10 7 1182 334 276 81 0 chr12 78300838 78300961 -42956569 + MIR SINE MIR 58 190 -72 7 1182 1022 110 0 20 chr12 78300970 78301119 -42956411 + B1_Mus2 SINE Alu 2 147 0 7 1182 4177 70 0 3 chr12 78301254 78301845 -42955685 + RLTR22_Mus LTR ERVK 1 589 -1219 7 1182 1293 91 23 0 chr12 78301845 78302021 -42955509 + B2_Mm2 SINE B2 2 181 -14 7 1182 385 91 0 0 chr12 78302064 78302119 -42955411 + B2_Mm2 SINE B2 47 101 -94 7 1182 1595 89 34 44 chr12 78302141 78302436 -42955094 + RLTR22_Mur LTR ERVK 540 831 -1017 7 1182 1291 111 124 4 chr12 78302668 78302894 -42954636 + RLTR22_Mus LTR ERVK 1543 1795 -13 7 1182 390 302 23 23 chr12 78303220 78303396 -42954134 - L1MC4 LINE L1 -126 7916 7741 7 1182 26 22 0 42 chr12 78303458 78303490 -42954040 + AT_rich Low_complexity Low_complexity 1 31 0 8 1182 1260 41 0 0 chr12 78303490 78303637 -42953893 + B1_Mm SINE Alu 1 147 0 8 1182 26 22 0 42 chr12 78303637 78303652 -42953878 + AT_rich Low_complexity Low_complexity 1 15 0 8 1182 558 275 45 55 chr12 78303653 78303853 -42953677 - B3A SINE B2 0 198 1 8 1182 381 320 151 46 chr12 78303857 78304142 -42953388 + ORR1E LTR MaLR 43 357 -2 8 1182 183 156 0 0 chr12 78304204 78304236 -42953294 + C-rich Low_complexity Low_complexity 3 34 0 8 1182 320 258 48 96 chr12 78304300 78304446 -42953084 - MLT1A1 LTR MaLR 0 408 270 8 1182 213 65 0 0 chr12 78304842 78304873 -42952657 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 8 1182 315 258 103 0 chr12 78304905 78305002 -42952528 - L1MB4 LINE L1 -3 6177 6071 8 1182 1113 103 91 0 chr12 78305398 78305563 -42951967 + B2_Mm2 SINE B2 2 181 -14 8 1182 216 0 0 0 chr12 78305563 78305587 -42951943 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1182 513 323 0 8 chr12 78305685 78305819 -42951711 - RSINE1 SINE B4 -17 148 16 8 1182 193 261 15 44 chr12 78306645 78306713 -42950817 - MER5A DNA MER1_type -28 161 96 8 1182 216 357 0 10 chr12 78306809 78306908 -42950622 - PB1D10 SINE Alu -19 98 1 8 1182 276 314 42 8 chr12 78307170 78307289 -42950241 + MER34 LTR ERV1 355 477 -65 8 1182 276 30 0 0 chr12 78308215 78308248 -42949282 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1182 540 263 45 0 chr12 78308301 78308434 -42949096 - B3A SINE B2 -59 139 1 8 1182 335 294 0 38 chr12 78308576 78308682 -42948848 - ID_B1 SINE B4 0 224 123 8 1182 289 281 65 24 chr12 78308585 78308709 -42948821 - B1F1 SINE Alu -9 140 12 8 1182 312 325 144 7 chr12 78309197 78309482 -42948048 - ORR1E LTR MaLR -4 355 32 8 1182 859 217 11 5 chr12 78309858 78310043 -42947487 + MTD LTR MaLR 5 190 -229 8 1182 371 174 31 3 chr12 78310087 78310171 -42947359 + MTD LTR MaLR 334 421 0 8 1182 192 77 0 0 chr12 78310396 78310422 -42947108 + (TA)n Simple_repeat Simple_repeat 1 26 0 8 1182 282 206 0 0 chr12 78310422 78310485 -42947045 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1182 379 231 0 13 chr12 78310898 78310977 -42946553 + B1F1 SINE Alu 12 89 -60 8 1182 1151 228 89 5 chr12 78310982 78311265 -42946265 - MTD LTR MaLR -93 326 24 8 1182 221 0 35 0 chr12 78311265 78311294 -42946236 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 1182 302 331 35 110 chr12 78311294 78311316 -42946214 - MTD LTR MaLR -355 24 6 8 1182 522 0 0 0 chr12 78311388 78311446 -42946084 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1182 547 256 26 0 chr12 78311446 78311563 -42945967 - RSINE1 SINE B4 -35 130 11 8 1182 399 172 67 33 chr12 78311561 78311651 -42945879 - PB1D7 SINE Alu -27 93 1 8 1182 225 241 11 132 chr12 78311572 78311663 -42945867 - MT2B2 LTR ERVL -350 234 155 8 1182 316 325 0 31 chr12 78311995 78312154 -42945376 + C-rich Low_complexity Low_complexity 2 155 0 8 1182 407 178 65 22 chr12 78312206 78312298 -42945232 + RMER10A LTR ERVL 318 413 -29 8 1182 296 261 0 0 chr12 78312355 78312420 -42945110 - MER33 DNA MER1_type -259 65 1 8 1182 218 244 0 0 chr12 78313003 78313048 -42944482 - B1F SINE Alu -70 79 35 8 1182 296 276 47 9 chr12 78313080 78313186 -42944344 - L1MC4 LINE L1 -393 7649 7540 8 1182 310 225 13 53 chr12 78313336 78313411 -42944119 - ID_B1 SINE B4 -97 127 56 8 1182 480 48 0 0 chr12 78313456 78313519 -42944011 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 1182 534 295 69 39 chr12 78313563 78313796 -42943734 - B4 SINE B4 -52 240 1 8 1182 232 294 58 12 chr12 78313827 78313913 -42943617 - L1MC4 LINE L1 -1064 6978 6889 8 1182 420 20 0 0 chr12 78313950 78313999 -42943531 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1182 265 288 37 67 chr12 78314060 78314194 -42943336 - L1MC4 LINE L1 -1125 6757 6617 8 1182 897 135 264 0 chr12 78314348 78314526 -42943004 - URR1A DNA MER1_type 0 226 2 8 1182 419 234 84 0 chr12 78314779 78314886 -42942644 - B3 SINE B2 -7 209 94 8 1182 603 239 129 27 chr12 78314885 78315109 -42942421 - RMER2 LTR ERV1 -43 524 278 8 1182 218 105 26 0 chr12 78315477 78315515 -42942015 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 8 1182 198 0 0 0 chr12 78315688 78315710 -42941820 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1182 273 298 18 80 chr12 78315848 78315961 -42941569 + PB1 SINE Alu 22 127 0 8 1182 192 77 0 0 chr12 78316891 78316917 -42940613 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 8 1182 21 0 0 0 chr12 78316995 78317016 -42940514 + AT_rich Low_complexity Low_complexity 1 21 0 8 1182 470 265 0 0 chr12 78317163 78317261 -42940269 - PB1 SINE Alu -14 113 16 8 1182 525 262 40 0 chr12 78317359 78317485 -42940045 - ID_B1 SINE B4 -15 209 79 8 1182 255 289 11 11 chr12 78317502 78317593 -42939937 - PB1D10 SINE Alu 0 117 27 8 1182 218 267 40 13 chr12 78318373 78318449 -42939081 + BC1_Mm scRNA scRNA 14 91 -61 8 1182 888 249 132 38 chr12 78319242 78319613 -42937917 - MLT1A1 LTR MaLR -2 406 1 8 1182 649 268 39 71 chr12 78320945 78321226 -42936304 - B4A SINE B4 -19 273 2 8 1182 233 257 107 13 chr12 78321719 78321794 -42935736 + MER5B DNA MER1_type 13 94 -84 8 1182 209 271 0 103 chr12 78321831 78321938 -42935592 - MER5B DNA MER1_type -77 101 6 8 1182 312 333 15 54 chr12 78322069 78322199 -42935331 - PB1 SINE Alu -2 125 1 8 1182 564 204 0 0 chr12 78322421 78322524 -42935006 + PB1D10 SINE Alu 2 104 -13 8 1182 371 335 98 48 chr12 78322923 78323239 -42934291 - LTR33 LTR ERVL -62 453 122 8 1182 330 360 82 47 chr12 78324326 78324559 -42932971 - L1MEc LINE L1 -5358 1057 817 8 1182 204 40 0 0 chr12 78324622 78324647 -42932883 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 8 1182 572 256 31 31 chr12 78324647 78324808 -42932722 - RSINE1 SINE B4 -3 162 2 8 1182 407 320 113 27 chr12 78324808 78325100 -42932430 - L1MEc LINE L1 -5637 763 447 8 1182 328 231 73 18 chr12 78325773 78325883 -42931647 + MER53 DNA hAT 1 116 -77 8 1182 249 275 0 12 chr12 78326180 78326261 -42931269 + LTR85c LTR Gypsy? 733 812 -11 8 1182 1347 156 4 13 chr12 78327023 78327250 -42930280 - URR1A DNA MER1_type -1 225 1 8 1182 699 241 147 13 chr12 78327764 78328069 -42929461 - MTEa LTR MaLR -18 401 3 8 1182 21 0 0 0 chr12 78328295 78328316 -42929214 + AT_rich Low_complexity Low_complexity 1 21 0 8 1182 396 40 0 0 chr12 78328700 78328750 -42928780 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 8 1182 446 290 0 0 chr12 78329124 78329231 -42928299 + B4A SINE B4 2 108 -184 8 1182 258 287 20 60 chr12 78329344 78329377 -42928153 - BC1_Mm scRNA scRNA -51 101 7 8 1182 312 213 0 76 chr12 78329377 78329443 -42928087 - tRNA-Ala-GCY_ tRNA tRNA -14 61 1 8 1182 319 292 69 12 chr12 78329786 78329959 -42927571 - MIR SINE MIR -26 236 54 8 1182 397 344 11 48 chr12 78330725 78330914 -42926616 - MLT1J LTR MaLR 0 512 331 8 1182 218 267 123 9 chr12 78331983 78332089 -42925441 - MIR SINE MIR -25 237 120 8 1182 288 0 0 0 chr12 78332135 78332167 -42925363 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1182 744 256 94 51 chr12 78332173 78332428 -42925102 - B4A SINE B4 -25 267 2 8 1182 734 0 12 0 chr12 78332551 78332637 -42924893 + (TG)n Simple_repeat Simple_repeat 1 87 0 8 1182 279 0 0 0 chr12 78332637 78332667 -42924863 + (GA)n Simple_repeat Simple_repeat 1 31 0 8 1182 5795 191 57 45 chr12 78332842 78334105 -42923425 - Lx9 LINE L1 -7 7637 6360 8 1182 718 98 11 11 chr12 78334132 78334245 -42923285 - B1_Mur4 SINE Alu -7 143 1 8 1182 25 31 0 0 chr12 78334251 78334283 -42923247 + AT_rich Low_complexity Low_complexity 1 32 0 8 1182 1450 75 5 0 chr12 78334606 78334794 -42922736 + B2_Mm1t SINE B2 2 190 -3 8 1182 377 327 86 6 chr12 78335125 78335288 -42922242 - MLT1I LTR MaLR -18 393 218 8 1182 207 119 71 0 chr12 78335399 78335441 -42922089 + A-rich Low_complexity Low_complexity 4 48 0 8 1182 351 244 81 0 chr12 78335448 78335534 -42921996 + RSINE1 SINE B4 4 96 -69 8 1182 369 0 0 0 chr12 78335591 78335632 -42921898 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1182 182 268 83 14 chr12 78336596 78336668 -42920862 + MIRb SINE MIR 164 240 -28 8 1182 33 43 0 0 chr12 78336999 78337046 -42920484 + AT_rich Low_complexity Low_complexity 1 47 0 8 1182 268 333 0 25 chr12 78337390 78337470 -42920060 - ID4_ SINE ID 0 83 6 8 1182 296 256 155 60 chr12 78337483 78337500 -42920030 - B4A SINE B4 -52 240 165 8 1182 370 224 18 140 chr12 78337500 78337614 -42919916 - PB1D10 SINE Alu -6 111 12 8 1182 296 256 155 60 chr12 78337614 78337630 -42919900 - B4A SINE B4 -52 164 81 8 1182 216 86 0 0 chr12 78339754 78339789 -42917741 + (CTCG)n Simple_repeat Simple_repeat 4 38 0 8 1182 21 0 0 0 chr12 78340258 78340279 -42917251 + GC_rich Low_complexity Low_complexity 1 21 0 8 1182 24 32 0 0 chr12 78341877 78341908 -42915622 + AT_rich Low_complexity Low_complexity 1 31 0 8 1182 288 0 0 0 chr12 78341987 78342019 -42915511 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1182 32 0 0 0 chr12 78342729 78342761 -42914769 + AT_rich Low_complexity Low_complexity 1 32 0 8 1182 436 254 161 16 chr12 78343453 78343577 -42913953 - B1F1 SINE Alu -1 148 7 8 1182 295 239 29 98 chr12 78343778 78343880 -42913650 + ID_B1 SINE B4 2 96 -128 8 1182 328 215 24 37 chr12 78344148 78344230 -42913300 - PB1D10 SINE Alu -20 97 17 8 1182 208 178 22 0 chr12 78344314 78344359 -42913171 + T-rich Low_complexity Low_complexity 1 46 0 8 1182 1783 56 0 13 chr12 78344450 78344686 -42912844 + L1_Mus2 LINE L1 6322 6554 -12 8 1182 270 0 0 0 chr12 78344689 78344719 -42912811 + (TAA)n Simple_repeat Simple_repeat 1 30 0 9 1182 1100 257 106 39 chr12 78346133 78346184 -42911346 - L1MA9 LINE L1 0 6312 6257 9 1182 261 0 0 0 chr12 78346184 78346213 -42911317 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1182 1100 257 106 39 chr12 78346213 78346595 -42910935 - L1MA9 LINE L1 -56 6256 5851 9 1182 430 256 152 24 chr12 78346605 78346769 -42910761 - MER34 LTR ERV1 0 542 358 9 1182 569 248 107 56 chr12 78346784 78347036 -42910494 - MER34 LTR ERV1 -237 305 41 9 1182 760 259 98 0 chr12 78347069 78347243 -42910287 - B3A SINE B2 0 198 8 9 1182 180 111 0 0 chr12 78347287 78347314 -42910216 + (CATG)n Simple_repeat Simple_repeat 3 29 0 9 1182 571 206 123 132 chr12 78347490 78347725 -42909805 + MER2 DNA MER2_type 99 331 -14 9 1182 197 159 23 0 chr12 78347742 78347786 -42909744 + CT-rich Low_complexity Low_complexity 2 46 0 9 1182 513 170 19 19 chr12 78347798 78347906 -42909624 - B1_Mur1 SINE Alu 0 149 42 9 1182 183 156 0 0 chr12 78347906 78347938 -42909592 + (TCTCTG)n Simple_repeat Simple_repeat 1 32 0 9 1182 253 190 17 33 chr12 78347952 78348012 -42909518 - B1_Mus2 SINE Alu -88 59 1 9 1182 1000 244 46 4 chr12 78348052 78348315 -42909215 - L1MA9 LINE L1 -559 5753 5480 9 1182 1128 49 21 0 chr12 78348406 78348550 -42908980 - B1_Mm SINE Alu 0 147 1 9 1182 225 228 0 48 chr12 78348749 78348832 -42908698 - L1MA9 LINE L1 -784 5359 5281 9 1182 247 219 0 179 chr12 78349172 78349250 -42908280 - PB1D10 SINE Alu -24 93 30 9 1182 587 257 55 147 chr12 78349493 78349677 -42907853 + MLT1A0 LTR MaLR 1 163 -202 9 1182 399 270 152 7 chr12 78349677 78349815 -42907715 + RSINE1 SINE B4 3 160 -5 9 1182 587 257 55 147 chr12 78349815 78350032 -42907498 + MLT1A0 LTR MaLR 164 365 0 9 1182 270 253 116 0 chr12 78350139 78350234 -42907296 - PB1D10 SINE Alu -8 109 4 9 1182 225 0 0 0 chr12 78350374 78350399 -42907131 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1182 418 323 131 11 chr12 78350868 78351128 -42906402 + MARNA DNA Mariner 194 484 -102 9 1182 342 270 30 9 chr12 78351301 78351406 -42906124 + PB1D10 SINE Alu 9 119 -30 9 1182 525 235 0 25 chr12 78351626 78351744 -42905786 - PB1D10 SINE Alu 0 117 3 9 1182 665 230 51 22 chr12 78351803 78351941 -42905589 - B1_Mur1 SINE Alu -2 147 6 9 1182 551 287 9 117 chr12 78351955 78352168 -42905362 - ID_B1 SINE B4 -28 196 7 9 1182 421 238 9 25 chr12 78352438 78352551 -42904979 + PB1D10 SINE Alu 9 126 -23 9 1182 643 186 25 94 chr12 78352633 78352793 -42904737 + B1_Mur1 SINE Alu 1 149 0 9 1182 189 0 0 0 chr12 78352986 78353007 -42904523 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 9 1182 580 246 15 7 chr12 78353007 78353142 -42904388 - B1_Mur3 SINE Alu -12 137 2 9 1182 299 302 78 78 chr12 78353142 78353169 -42904361 - MT2B LTR ERVL -446 155 129 9 1182 885 232 35 15 chr12 78353518 78353715 -42903815 - B3 SINE B2 -14 202 2 9 1182 746 281 49 25 chr12 78354267 78354552 -42902978 - B4A SINE B4 0 292 1 9 1182 863 264 69 36 chr12 78355359 78355634 -42901896 - Lx8 LINE L1 -371 7102 6819 9 1182 387 297 149 22 chr12 78356556 78357000 -42900530 + L1MA9 LINE L1 2195 2694 -4155 9 1182 386 20 0 0 chr12 78357040 78357089 -42900441 + RLTRETN_Mm LTR ERVK 1 49 -273 9 1182 254 302 0 74 chr12 78357091 78357241 -42900289 + L1MA9 LINE L1 2773 2906 -3643 9 1182 539 151 82 25 chr12 78357244 78357366 -42900164 + B1_Mur4 SINE Alu 21 150 0 9 1182 861 288 115 10 chr12 78357366 78357766 -42899764 + L1MA9 LINE L1 2894 3335 -3510 9 1182 785 277 137 6 chr12 78357763 78358122 -42899408 + L1MA9 LINE L1 4458 4863 -1982 9 1182 742 222 105 30 chr12 78358123 78358323 -42899207 + B3 SINE B2 2 216 0 9 1182 851 286 99 34 chr12 78358323 78359098 -42898432 + L1MA9 LINE L1 4840 5706 -1139 9 1182 2046 201 14 138 chr12 78359098 78359685 -42897845 - RMER19C LTR ERVK 0 611 1 9 1182 320 227 139 24 chr12 78359915 78360031 -42897499 + L1MA9 LINE L1 6062 6183 -822 9 1182 282 29 0 0 chr12 78360034 78360069 -42897461 + (TA)n Simple_repeat Simple_repeat 1 35 0 9 1182 346 298 152 37 chr12 78360071 78360235 -42897295 + B4A SINE B4 5 187 -105 9 1182 399 41 0 0 chr12 78360241 78360290 -42897240 + (CAA)n Simple_repeat Simple_repeat 2 50 0 9 1182 969 226 70 0 chr12 78360413 78360612 -42896918 + B3 SINE B2 1 213 -3 9 1182 34 24 0 0 chr12 78360834 78360875 -42896655 + AT_rich Low_complexity Low_complexity 1 41 0 9 1182 1171 48 7 0 chr12 78360962 78361108 -42896422 - B1_Mus2 SINE Alu 0 147 1 9 1182 814 223 90 19 chr12 78361304 78361607 -42895923 + L1MA9 LINE L1 6525 6850 -164 9 1182 288 314 0 11 chr12 78361621 78361708 -42895822 + (TG)n Simple_repeat Simple_repeat 2 87 0 9 1182 652 234 108 94 chr12 78361711 78361999 -42895531 - B4A SINE B4 0 292 1 9 1182 228 248 119 0 chr12 78362020 78362121 -42895409 + L1MA9 LINE L1 6859 6971 -22 9 1182 2463 111 79 17 chr12 78362125 78362529 -42895001 - RLTR23 LTR ERV1 0 430 2 9 1182 433 284 55 9 chr12 78362534 78362644 -42894886 + PB1 SINE Alu 3 117 -10 9 1182 337 214 160 75 chr12 78362691 78362797 -42894733 - PB1D10 SINE Alu -2 115 1 9 1182 1129 51 0 0 chr12 78362866 78363004 -42894526 + B1_Mus1 SINE Alu 1 138 -10 9 1182 1108 61 0 52 chr12 78363386 78363541 -42893989 - B1_Mm SINE Alu 0 147 1 9 1182 1147 198 40 0 chr12 78363589 78363791 -42893739 - B3 SINE B2 -6 210 1 9 1182 545 261 15 0 chr12 78363793 78363927 -42893603 + B3 SINE B2 81 216 0 9 1182 717 267 114 49 chr12 78363950 78364214 -42893316 + B4A SINE B4 5 285 -7 9 1182 207 139 0 0 chr12 78364325 78364361 -42893169 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1182 199 390 0 0 chr12 78364397 78364414 -42893116 + L2b LINE L2 3287 3338 -37 9 1182 215 296 0 0 chr12 78364414 78364468 -42893062 + MIRb SINE MIR 201 254 -14 9 1182 406 226 290 44 chr12 78364813 78365151 -42892379 + L1ME1 LINE L1 5397 5817 -362 9 1182 245 284 80 96 chr12 78365148 78365184 -42892346 + L1ME1 LINE L1 5938 5974 -205 9 1182 583 275 141 64 chr12 78365184 78365441 -42892089 + MLT1A1 LTR MaLR 1 294 -114 9 1182 470 239 135 97 chr12 78365441 78365626 -42891904 - B3A SINE B2 -4 194 3 9 1182 583 275 141 64 chr12 78365626 78365745 -42891785 + MLT1A1 LTR MaLR 295 406 -2 9 1182 245 284 80 96 chr12 78365745 78365895 -42891635 + L1ME1 LINE L1 5975 6121 -58 9 1182 21 36 0 0 chr12 78365923 78365951 -42891579 + AT_rich Low_complexity Low_complexity 1 28 0 9 1182 1288 101 0 25 chr12 78365987 78366190 -42891340 - L1_Mus2 LINE L1 -1 6565 6368 9 1182 316 333 28 0 chr12 78366312 78366420 -42891110 - PB1 SINE Alu -3 124 14 9 1182 483 63 0 0 chr12 78367022 78367085 -42890445 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 9 1182 273 315 27 0 chr12 78367174 78367285 -42890245 - L1MC5 LINE L1 -527 7434 7321 9 1182 420 268 105 122 chr12 78367349 78367825 -42889705 - L1MC5 LINE L1 -759 7202 6735 9 1182 22 0 0 0 chr12 78368013 78368035 -42889495 + AT_rich Low_complexity Low_complexity 1 22 0 9 1182 34 55 0 0 chr12 78368213 78368268 -42889262 + AT_rich Low_complexity Low_complexity 1 55 0 9 1182 2235 123 14 92 chr12 78369080 78369339 -42888191 - Lx2B LINE L1 -353 6647 6414 9 1182 1132 75 0 0 chr12 78369339 78369486 -42888044 - B1_Mus1 SINE Alu 0 148 2 9 1182 2235 123 14 92 chr12 78369486 78369639 -42887891 - Lx2B LINE L1 -587 6413 6267 9 1182 301 109 31 0 chr12 78369657 78369721 -42887809 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 9 1182 630 283 61 44 chr12 78369721 78369902 -42887628 - ID_B1 SINE B4 -16 208 25 9 1182 8983 3 0 0 chr12 78370428 78371490 -42886040 - L1Md_A LINE L1 0 6582 5521 9 1182 384 250 30 26 chr12 78371734 78371949 -42885581 + MTD LTR MaLR 128 419 0 9 1182 717 256 224 13 chr12 78372239 78372543 -42884987 - MTC LTR MaLR -52 369 10 9 1182 316 161 12 12 chr12 78372543 78372625 -42884905 + GA-rich Low_complexity Low_complexity 3 84 0 9 1182 13534 71 45 12 chr12 78372625 78374961 -42882569 - MusHAL1 LINE L1 -726 2627 219 9 1182 682 240 94 0 chr12 78375124 78375316 -42882214 - Lx9 LINE L1 -612 7032 6823 9 1182 275 318 65 7 chr12 78375388 78375543 -42881987 + L1MEc LINE L1 442 605 -5795 9 1182 225 139 0 0 chr12 78375859 78375902 -42881628 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1182 1122 82 0 0 chr12 78375902 78376049 -42881481 - B1_Mus2 SINE Alu 0 147 1 9 1182 705 124 0 0 chr12 78377534 78377639 -42879891 + BC1_Mm scRNA scRNA 1 105 -47 9 1182 270 282 86 0 chr12 78377781 78377898 -42879632 + L1MEc LINE L1 684 810 -5590 9 1182 499 274 113 15 chr12 78378913 78379187 -42878343 - L1ME1 LINE L1 -178 6001 5701 9 1182 424 250 17 35 chr12 78379383 78379499 -42878031 - PB1D10 SINE Alu 0 117 4 9 1182 600 272 47 7 chr12 78380148 78380296 -42877234 - RSINE1 SINE B4 -2 163 10 9 1182 246 32 0 0 chr12 78380345 78380376 -42877154 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1182 1162 51 0 0 chr12 78380376 78380514 -42877016 - B1_Mus1 SINE Alu -9 139 2 9 147 16283 87 13 19 chr12 78380686 78383214 -42874316 + L1VL2 LINE L1 475 2992 -922 9 1183 252 0 0 0 chr12 78383214 78383242 -42874288 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 9 1183 16283 116 8 17 chr12 78383242 78384361 -42873169 + L1VL2 LINE L1 2993 4098 -1788 9 1183 581 125 8 32 chr12 78384362 78384486 -42873044 + Lx LINE L1 6534 6654 0 9 1183 326 23 23 0 chr12 78384802 78384845 -42872685 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1183 295 351 28 50 chr12 78384858 78384999 -42872531 - RSINE1 SINE B4 -25 140 3 9 1183 369 0 0 0 chr12 78385167 78385208 -42872322 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 9 1183 1212 51 0 0 chr12 78385209 78385367 -42872163 - B2_Mm2 SINE B2 -37 158 1 9 1183 22 35 0 0 chr12 78386064 78386093 -42871437 + AT_rich Low_complexity Low_complexity 1 29 0 9 1183 842 96 0 55 chr12 78386432 78386597 -42870933 + CT-rich Low_complexity Low_complexity 1 156 0 9 1183 988 151 5 21 chr12 78386614 78386803 -42870727 - Lx3A LINE L1 -3 6978 6793 9 1183 7080 59 14 64 chr12 78386896 78387149 -42870381 - L1_Mus2 LINE L1 0 6566 6318 9 1183 3112 58 2 5 chr12 78387149 78387546 -42869984 + MTA_Mm LTR MaLR 1 396 0 9 1183 7080 69 12 43 chr12 78387546 78388693 -42868837 - L1_Mus2 LINE L1 -249 6317 5217 9 1183 1853 85 84 11 chr12 78388673 78388847 -42868683 + L1_Mm LINE L1 4896 5066 -817 9 1183 3481 88 70 4 chr12 78388847 78389347 -42868183 + L1Md_F2 LINE L1 6038 6570 -12 9 1183 1853 85 84 11 chr12 78389347 78389456 -42868074 + L1_Mm LINE L1 5067 5199 -684 9 1183 618 193 9 0 chr12 78389762 78389871 -42867659 - B1_Mus1 SINE Alu -13 135 26 9 1183 831 304 57 27 chr12 78390615 78390916 -42866614 - MLT1C LTR MaLR 0 467 158 9 1183 591 15 0 0 chr12 78390919 78390987 -42866543 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 1183 236 298 0 45 chr12 78391053 78391141 -42866389 + LTR40b LTR ERVL 373 456 -6 1 1183 196 267 22 0 chr12 78391177 78391222 -42866308 + MIR SINE MIR 34 79 -129 1 1183 555 310 158 26 chr12 78391226 78391491 -42866039 - RMER15 LTR ERVL 0 575 276 1 1183 323 261 37 148 chr12 78391477 78391666 -42865864 - RMER15 LTR ERVL -406 169 2 1 1183 1495 6 0 0 chr12 78392770 78392948 -42864582 + L1Md_T LINE L1 6405 6582 0 1 1183 480 257 108 83 chr12 78392974 78393131 -42864399 + B3 SINE B2 3 163 -53 1 1183 644 279 117 28 chr12 78393131 78393526 -42864004 - L1MCa LINE L1 -4742 2009 1580 1 1183 428 306 174 28 chr12 78393559 78394029 -42863501 - L1MCa LINE L1 -4855 1190 652 1 1183 723 289 23 82 chr12 78394115 78394420 -42863110 - L1MCa LINE L1 -5919 832 546 1 1183 24 53 0 0 chr12 78394420 78394458 -42863072 + AT_rich Low_complexity Low_complexity 1 38 0 1 1183 1245 185 146 0 chr12 78394463 78394744 -42862786 - Lx9 LINE L1 -39 7605 7284 1 1183 664 229 141 5 chr12 78394807 78394991 -42862539 - B3 SINE B2 -6 210 2 1 1183 1602 66 0 0 chr12 78395009 78395220 -42862310 - L1Md_T LINE L1 0 6582 6372 1 1183 234 282 110 21 chr12 78395293 78395438 -42862092 - L1MCa LINE L1 -5883 162 5 1 1183 666 240 136 5 chr12 78395919 78396103 -42861427 - B3 SINE B2 -6 210 3 1 1183 23 0 0 0 chr12 78396208 78396231 -42861299 + AT_rich Low_complexity Low_complexity 1 23 0 1 1183 189 0 0 0 chr12 78396738 78396759 -42860771 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1183 251 342 13 13 chr12 78396973 78397050 -42860480 - RSINE1 SINE B4 -86 79 3 1 1183 232 232 36 0 chr12 78397254 78397310 -42860220 + L2c LINE L2 3325 3382 -5 1 1183 189 0 0 0 chr12 78397311 78397332 -42860198 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1183 510 241 94 8 chr12 78397767 78397884 -42859646 + RSINE1 SINE B4 3 129 -36 1 1183 425 110 12 0 chr12 78397890 78397972 -42859558 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1183 264 286 21 21 chr12 78399025 78399118 -42858412 - MER57-int LTR ERV1 -294 7243 7151 1 1183 293 309 203 0 chr12 78399207 78399330 -42858200 + B1_Mur1 SINE Alu 1 148 -1 1 1183 513 32 0 0 chr12 78399614 78399677 -42857853 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1183 315 0 0 0 chr12 78399677 78399711 -42857819 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1183 264 262 48 16 chr12 78399720 78399782 -42857748 - ID4 SINE ID -12 71 8 1 1183 239 0 0 31 chr12 78400088 78400120 -42857410 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1183 319 313 112 22 chr12 78400126 78400260 -42857270 + MER57D LTR ERV1 21 166 -206 1 1183 337 250 87 24 chr12 78400254 78400381 -42857149 + MER57D LTR ERV1 273 407 -4 1 1183 309 261 61 0 chr12 78401107 78401194 -42856336 + B1F SINE Alu 20 109 -8 1 1183 308 267 106 7 chr12 78401201 78401352 -42856178 - L1MC LINE L1 -1310 4836 4671 1 1183 875 326 100 49 chr12 78401356 78402034 -42855496 + LTR41 LTR ERVL 18 755 -13 1 1183 1015 284 126 47 chr12 78402035 78402852 -42854678 - L1MEc LINE L1 -1482 4837 3956 1 1183 436 234 159 42 chr12 78402845 78403229 -42854301 - L1MEc LINE L1 -5147 1253 825 1 1183 282 337 9 67 chr12 78403235 78403340 -42854190 - B1F SINE Alu -50 99 1 1 1183 24 0 0 0 chr12 78403367 78403391 -42854139 + AT_rich Low_complexity Low_complexity 1 24 0 1 1183 590 120 0 26 chr12 78403391 78403498 -42854032 - B1_Mus2 SINE Alu 0 147 26 1 1183 582 244 229 16 chr12 78403519 78403777 -42853753 - L1MEc LINE L1 -5675 725 413 1 1183 207 0 0 0 chr12 78403788 78403811 -42853719 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1183 822 175 0 14 chr12 78404029 78404168 -42853362 + URR1B DNA MER1_type 6 142 -83 1 1183 2068 111 155 18 chr12 78404170 78404556 -42852974 - RLTR28 LTR ERVL -3 521 83 1 1183 1436 62 0 40 chr12 78405146 78405347 -42852183 - B2_Mm1t SINE B2 0 193 1 1 1183 383 256 118 16 chr12 78405354 78405481 -42852049 - B1F SINE Alu 0 149 10 1 1183 193 305 147 0 chr12 78405620 78405715 -42851815 + MIRc SINE MIR 53 161 -107 1 1183 216 234 64 0 chr12 78406630 78406677 -42850853 - B1F1 SINE Alu -51 98 49 1 1183 237 256 0 0 chr12 78406935 78406978 -42850552 - B1_Mur1 SINE Alu -15 134 92 1 1183 434 200 180 23 chr12 78406990 78407118 -42850412 - B1_Mur1 SINE Alu 0 149 2 1 1183 345 279 0 44 chr12 78407235 78407246 -42850284 + PB1D10 SINE Alu 1 86 -31 1 1183 389 218 0 13 chr12 78407246 78407325 -42850205 + ID_B1 SINE B4 90 167 -57 1 1183 24 53 0 0 chr12 78407329 78407367 -42850163 + AT_rich Low_complexity Low_complexity 1 38 0 1 1183 279 133 0 0 chr12 78409240 78409285 -42848245 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1183 383 0 21 0 chr12 78409368 78409415 -42848115 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1183 530 243 118 26 chr12 78411288 78411442 -42846088 - MER33 DNA MER1_type -169 155 2 1 1183 1765 129 188 3 chr12 78412206 78412525 -42845005 - ORR1C1 LTR MaLR 0 378 1 1 1183 347 209 30 0 chr12 78412590 78412657 -42844873 - RMER30 DNA MER1_type -132 70 2 1 1183 252 342 13 0 chr12 78412750 78412829 -42844701 + ID4_ SINE ID 3 82 -1 1 1183 380 291 136 19 chr12 78412957 78413111 -42844419 + B3A SINE B2 5 176 -19 1 1183 21 0 0 0 chr12 78413207 78413228 -42844302 + AT_rich Low_complexity Low_complexity 1 21 0 1 1183 44 0 0 0 chr12 78414325 78414369 -42843161 + AT_rich Low_complexity Low_complexity 1 44 0 1 1183 194 344 72 116 chr12 78414885 78415135 -42842395 + MIR SINE MIR 22 260 -2 1 1183 227 253 51 51 chr12 78415344 78415423 -42842107 - MER5A1 DNA MER1_type -87 79 1 1 1183 35 55 0 14 chr12 78415805 78415822 -42841708 + AT_rich Low_complexity Low_complexity 1 17 0 1 1183 5448 80 19 0 chr12 78415822 78416559 -42840971 - Lx3_Mus LINE L1 0 7009 6259 1 1183 35 55 0 14 chr12 78416559 78416615 -42840915 + AT_rich Low_complexity Low_complexity 1 56 0 1 1183 361 283 28 0 chr12 78416665 78416771 -42840759 - LTR33A LTR ERVL 0 520 412 1 1183 27930 87 19 19 chr12 78417715 78421176 -42836354 - L1_Mus2 LINE L1 0 6566 3133 1 1183 279 0 0 0 chr12 78421176 78421207 -42836323 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1183 27930 100 23 22 chr12 78421207 78422734 -42834796 - L1_Mus2 LINE L1 -2751 3132 1578 1 1183 330 205 11 46 chr12 78422734 78422821 -42834709 - L1_Mus2 LINE L1 -5782 834 751 1 1183 289 266 26 9 chr12 78422944 78423058 -42834472 - L1VL2 LINE L1 -6150 185 70 1 1183 406 241 80 20 chr12 78423123 78423252 -42834278 - MER5A1 DNA MER1_type -37 129 1 1 1183 473 226 2 2 chr12 78423787 78423889 -42833641 + B4A SINE B4 169 270 -22 1 1183 186 103 0 0 chr12 78423907 78423936 -42833594 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1183 24 96 0 0 chr12 78423958 78424031 -42833499 + AT_rich Low_complexity Low_complexity 1 73 0 1 1183 21 36 0 0 chr12 78424383 78424411 -42833119 + AT_rich Low_complexity Low_complexity 1 28 0 1 1183 348 127 0 0 chr12 78425071 78425126 -42832404 + (AGGGGG)n Simple_repeat Simple_repeat 5 59 0 1 1183 28 71 0 0 chr12 78425658 78425714 -42831816 + AT_rich Low_complexity Low_complexity 1 56 0 1 1183 420 20 0 0 chr12 78426164 78426213 -42831317 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1183 522 0 0 0 chr12 78426213 78426270 -42831260 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1183 269 322 88 22 chr12 78426792 78426973 -42830557 - L1MEc LINE L1 -6071 329 137 1 1183 638 232 58 7 chr12 78427017 78427156 -42830374 - B1_Mur1 SINE Alu -1 148 3 1 1183 244 269 128 9 chr12 78428371 78428480 -42829050 - B1F1 SINE Alu -5 144 23 1 1183 323 278 52 0 chr12 78428480 78428577 -42828953 - PB1D10 SINE Alu -11 106 5 1 1183 1147 106 27 27 chr12 78429164 78429348 -42828182 + B2_Mm2 SINE B2 4 187 -8 1 1183 224 357 0 23 chr12 78429544 78429630 -42827900 - MIRb SINE MIR -15 253 170 1 1183 227 274 114 45 chr12 78430157 78430245 -42827285 - L2a LINE L2 -28 3398 3305 1 1183 22 0 0 0 chr12 78430945 78430967 -42826563 + AT_rich Low_complexity Low_complexity 1 22 0 1 1183 31 26 0 0 chr12 78432274 78432312 -42825218 + AT_rich Low_complexity Low_complexity 1 38 0 1 1183 237 196 0 0 chr12 78433769 78433820 -42823710 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1183 342 0 0 0 chr12 78433908 78433946 -42823584 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1183 267 31 0 0 chr12 78433985 78434017 -42823513 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1183 249 33 0 0 chr12 78434056 78434086 -42823444 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1183 531 0 0 0 chr12 78434125 78434184 -42823346 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1183 399 367 69 33 chr12 78434417 78434662 -42822868 - MIR SINE MIR -1 261 8 1 1183 249 33 0 0 chr12 78434830 78434860 -42822670 + (TGG)n Simple_repeat Simple_repeat 2 31 0 1 1183 1086 88 0 0 chr12 78434860 78434997 -42822533 - B1_Mus1 SINE Alu -10 138 2 1 1183 35 0 0 0 chr12 78435106 78435141 -42822389 + AT_rich Low_complexity Low_complexity 1 35 0 1 1183 519 263 77 18 chr12 78435158 78435328 -42822202 - B3A SINE B2 -18 180 1 1 1183 536 281 66 30 chr12 78436018 78436319 -42821211 - L1ME1 LINE L1 -18 6161 5850 1 1183 352 122 260 84 chr12 78436323 78436477 -42821053 - B2_Mm2 SINE B2 -5 190 10 1 1183 1096 148 11 0 chr12 78436483 78436659 -42820871 - B2_Mm1t SINE B2 -14 179 2 1 1183 29 0 0 0 chr12 78436763 78436792 -42820738 + AT_rich Low_complexity Low_complexity 1 29 0 1 1183 322 328 0 8 chr12 78436843 78436969 -42820561 - L1ME1 LINE L1 -459 5720 5596 1 1183 369 363 62 52 chr12 78436974 78437159 -42820371 + B4A SINE B4 1 187 -105 1 1183 3638 133 221 19 chr12 78437159 78437928 -42819602 - RLTR25A LTR ERVK 0 1103 180 1 1183 397 249 40 151 chr12 78437943 78438246 -42819284 - RMER2 LTR ERV1 -156 411 8 1 1183 525 158 50 0 chr12 78438260 78438361 -42819169 - RLTR25A LTR ERVK -997 106 1 1 1183 514 232 69 56 chr12 78438361 78438467 -42819063 + B4A SINE B4 185 292 0 1 1183 3356 71 18 2 chr12 78438495 78438933 -42818597 - LTRIS5 LTR ERV1 0 447 3 1 1183 263 318 23 8 chr12 78438982 78439112 -42818418 - L1ME1 LINE L1 -679 5500 5369 1 1183 273 313 83 59 chr12 78439273 78439437 -42818093 - B4A SINE B4 -83 209 46 1 1183 22 35 0 0 chr12 78439464 78439493 -42818037 + AT_rich Low_complexity Low_complexity 1 29 0 1 1183 22 35 0 0 chr12 78439514 78439543 -42817987 + AT_rich Low_complexity Low_complexity 1 29 0 1 1183 459 241 62 0 chr12 78439818 78439980 -42817550 - L1ME1 LINE L1 -2953 3193 3022 1 1183 320 297 148 32 chr12 78440224 78440562 -42816968 - L1ME1 LINE L1 -3166 2980 2604 1 1183 443 319 114 61 chr12 78440614 78440792 -42816738 - L1ME1 LINE L1 -3617 2529 2329 1 1183 195 42 0 0 chr12 78440792 78440816 -42816714 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1183 443 319 114 61 chr12 78440816 78441031 -42816499 - L1ME1 LINE L1 -3818 2328 2116 1 1183 789 239 62 5 chr12 78441151 78441344 -42816186 - B3 SINE B2 -12 204 1 1 1183 589 324 22 6 chr12 78441394 78441577 -42815953 + B4A SINE B4 1 186 -106 1 1183 445 310 106 30 chr12 78443035 78443364 -42814166 - L1ME1 LINE L1 -4841 1401 1048 1 1183 834 265 50 0 chr12 78443477 78443658 -42813872 + B3 SINE B2 2 191 -25 1 1183 26 30 0 0 chr12 78443943 78443976 -42813554 + AT_rich Low_complexity Low_complexity 1 33 0 1 1183 1081 324 80 48 chr12 78444159 78444811 -42812719 - Lx8 LINE L1 -221 7252 6580 1 1183 394 305 131 33 chr12 78445026 78445148 -42812382 - RSINE1 SINE B4 0 165 32 1 1183 358 358 109 20 chr12 78445675 78445969 -42811561 + L1MC LINE L1 2364 2683 -3463 1 1183 7448 48 3 1 chr12 78446042 78446961 -42810569 - L1Md_F2 LINE L1 0 6582 5662 1 1183 230 56 28 0 chr12 78447396 78447432 -42810098 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1 1183 305 279 61 61 chr12 78447736 78447835 -42809695 + Cheshire DNA MER1_type 2 100 -2320 1 1183 822 260 35 5 chr12 78448686 78448887 -42808643 - B3 SINE B2 -9 207 1 1 1183 297 164 16 16 chr12 78448913 78448975 -42808555 - B1F1 SINE Alu -6 143 82 1 1183 880 77 11 0 chr12 78450245 78450383 -42807147 + B1_Mm SINE Alu 7 149 0 1 1183 277 139 0 44 chr12 78450410 78450523 -42807007 + A-rich Low_complexity Low_complexity 1 108 0 1 1183 518 287 0 20 chr12 78450658 78450811 -42806719 - RSINE1 SINE B4 -15 150 1 1 1183 339 296 36 18 chr12 78451434 78451544 -42805986 + MER5A DNA MER1_type 30 141 -48 1 1183 352 263 112 17 chr12 78451657 78451773 -42805757 - Lx8 LINE L1 -116 7357 7231 1 1183 25 0 0 0 chr12 78452251 78452276 -42805254 + AT_rich Low_complexity Low_complexity 1 25 0 1 1183 317 329 50 69 chr12 78452276 78452436 -42805094 - HAL1-3A_ME LINE L1 -417 2441 2285 1 1183 502 171 256 0 chr12 78452461 78452578 -42804952 - B1_Mus1 SINE Alu -1 147 1 1 1183 227 31 31 0 chr12 78452681 78452713 -42804817 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1183 1192 68 0 0 chr12 78452716 78452863 -42804667 - B1_Mm SINE Alu 0 147 1 1 1183 329 329 74 34 chr12 78453237 78453385 -42804145 + B4 SINE B4 3 156 -136 1 1183 1213 35 7 0 chr12 78453774 78453918 -42803612 - B1_Mm SINE Alu 0 147 3 1 1183 643 335 39 26 chr12 78453922 78454152 -42803378 - B4A SINE B4 -58 234 2 1 1183 504 95 0 0 chr12 78456854 78456938 -42800592 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 1183 255 125 0 0 chr12 78456938 78456978 -42800552 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1183 24 0 0 0 chr12 78457507 78457531 -42799999 + AT_rich Low_complexity Low_complexity 1 24 0 1 1183 356 97 16 0 chr12 78457940 78458002 -42799528 + (TGG)n Simple_repeat Simple_repeat 3 65 0 1 1183 261 292 15 0 chr12 78458015 78458080 -42799450 - B4 SINE B4 -226 66 1 1 1183 9505 81 7 4 chr12 78458324 78460365 -42797165 + L1_Mus2 LINE L1 4523 6565 -1 1 1183 214 178 0 0 chr12 78460369 78460414 -42797116 + A-rich Low_complexity Low_complexity 5 49 0 1 1183 2819 67 0 11 chr12 78460922 78461302 -42796228 - L1Md_F2 LINE L1 0 6582 6207 1 1183 349 289 128 28 chr12 78461427 78461805 -42795725 - L1MD LINE L1 -2118 4028 3614 1 1183 23 0 0 0 chr12 78461904 78461927 -42795603 + AT_rich Low_complexity Low_complexity 1 23 0 1 1183 231 330 11 0 chr12 78461934 78462025 -42795505 + Cheshire DNA MER1_type 2317 2408 -12 1 1183 248 247 42 67 chr12 78462032 78462197 -42795333 - L1MEc LINE L1 -2923 3396 3236 1 1183 981 263 5 0 chr12 78462317 78462511 -42795019 - B3 SINE B2 -21 195 1 1 1183 423 0 0 0 chr12 78462548 78462595 -42794935 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1183 212 350 33 0 chr12 78462763 78462823 -42794707 - ID2 SINE ID -2 81 20 1 1183 312 137 0 0 chr12 78462844 78462895 -42794635 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 1 1183 302 345 0 26 chr12 78462895 78463008 -42794522 - PB1D10 SINE Alu -7 110 1 1 1183 547 278 228 38 chr12 78463009 78463532 -42793998 - L1MEc LINE L1 -5641 759 138 1 1183 263 175 0 17 chr12 78463541 78463599 -42793931 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1183 22 0 0 0 chr12 78464659 78464681 -42792849 + AT_rich Low_complexity Low_complexity 1 22 0 1 1183 792 348 97 20 chr12 78464815 78465208 -42792322 - MLT1D LTR MaLR -79 426 4 1 1183 32 26 0 0 chr12 78467579 78467618 -42789912 + AT_rich Low_complexity Low_complexity 1 39 0 1 1183 22 0 0 0 chr12 78468209 78468231 -42789299 + AT_rich Low_complexity Low_complexity 1 22 0 1 1183 1004 252 77 32 chr12 78468565 78468967 -42788563 - L1MA9 LINE L1 -77 6235 5816 1 1183 324 0 0 0 chr12 78469130 78469166 -42788364 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1183 305 233 321 7 chr12 78469194 78469398 -42788132 - L1MA9 LINE L1 -538 5762 5487 1 1183 633 233 40 2 chr12 78469555 78469756 -42787774 - L1MA9 LINE L1 -679 5504 5300 1 1183 1709 263 82 19 chr12 78469826 78470496 -42787034 - L1MA9 LINE L1 -1366 4774 4063 1 1183 600 283 111 10 chr12 78470513 78470820 -42786710 - L1MA9 LINE L1 -2362 3778 3441 1 1183 757 223 75 88 chr12 78470956 78471447 -42786083 - RMER4B LTR ERVK -4 462 7 1 1183 653 283 7 0 chr12 78471702 78471840 -42785690 + RSINE1 SINE B4 8 146 -19 1 1183 270 0 0 0 chr12 78472577 78472607 -42784923 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1 1183 3987 190 12 4 chr12 78472609 78473339 -42784191 - Lx2B LINE L1 -20 6980 6245 1 1183 557 196 0 10 chr12 78474395 78474493 -42783037 - B1_Mur1 SINE Alu 0 149 53 1 1183 210 105 0 0 chr12 78474599 78474637 -42782893 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1183 357 287 174 14 chr12 78474671 78474809 -42782721 + RSINE1 SINE B4 3 162 -3 1 1183 945 263 125 59 chr12 78474913 78475160 -42782370 - L1M2 LINE L1 -3038 3102 2831 1 1183 230 0 33 0 chr12 78475160 78475190 -42782340 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1183 945 263 125 59 chr12 78475190 78475226 -42782304 - L1M2 LINE L1 -3310 2830 2799 1 1183 325 265 0 35 chr12 78475226 78475312 -42782218 + ID4 SINE ID 1 83 0 1 1183 991 263 125 58 chr12 78475312 78475907 -42781623 - L1M2 LINE L1 -3342 2798 2165 1 1183 911 252 9 9 chr12 78476482 78476698 -42780832 + B3 SINE B2 1 216 0 1 1183 431 35 18 0 chr12 78477673 78477730 -42779800 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1183 2824 12 61 0 chr12 78478210 78478536 -42778994 - ORR1A0 LTR MaLR 0 346 1 1 1183 1314 277 49 5 chr12 78478591 78478983 -42778547 + MER44B DNA MER2_type 1 457 -93 1 1183 969 233 126 43 chr12 78479078 78479428 -42778102 - MTEa LTR MaLR 0 379 1 1 1183 382 296 78 3 chr12 78480391 78480588 -42776942 - L1MA5A LINE L1 -294 6006 5792 1 1183 4150 196 39 21 chr12 78480650 78481515 -42776015 - Lx2B LINE L1 -1 6999 6119 1 1183 2835 108 72 62 chr12 78481515 78482029 -42775501 + MURVY-LTR LTR ERV1 1 519 0 1 1183 380 246 83 90 chr12 78482029 78482185 -42775345 + MuRRS4-int LTR ERV1 3 157 -4906 1 1183 523 138 9 0 chr12 78482347 78482456 -42775074 - Lx3_Mus LINE L1 0 7009 6900 1 1183 665 113 0 0 chr12 78482524 78482621 -42774909 + MTC LTR MaLR 1 97 -324 1 1183 316 89 0 0 chr12 78482622 78482667 -42774863 - L1_Mur2 LINE L1 -1147 4730 4686 1 1183 8252 72 6 1 chr12 78482666 78484111 -42773419 + L1_Mus2 LINE L1 4757 6212 -354 1 1183 242 241 35 0 chr12 78484128 78484186 -42773344 - L1MA5A LINE L1 -734 5566 5507 1 1183 291 190 0 0 chr12 78484187 78484245 -42773285 + CT-rich Low_complexity Low_complexity 4 61 0 1 1183 214 178 0 0 chr12 78484337 78484382 -42773148 + T-rich Low_complexity Low_complexity 1 45 0 1 1183 38094 40 1 3 chr12 78484394 78490663 -42766867 - L1Md_T LINE L1 -12 6573 220 1 1183 856 59 0 35 chr12 78491593 78491734 -42765796 + (GA)n Simple_repeat Simple_repeat 2 137 0 1 1183 21 0 0 0 chr12 78492098 78492119 -42765411 + AT_rich Low_complexity Low_complexity 1 21 0 1 1183 250 279 0 0 chr12 78492465 78492526 -42765004 - L2a LINE L2 -255 3171 3111 1 1183 399 334 164 19 chr12 78492577 78492900 -42764630 - L2a LINE L2 -471 2948 2579 1 1183 7166 11 5 0 chr12 78492990 78493800 -42763730 - L1Md_A LINE L1 0 6582 5769 1 1183 590 309 40 35 chr12 78493953 78494087 -42763443 + MER58A DNA MER1_type 8 138 -86 1 1183 463 228 40 0 chr12 78494087 78494188 -42763342 + U6 snRNA snRNA 2 106 -1 1 1183 590 309 40 35 chr12 78494188 78494254 -42763276 + MER58A DNA MER1_type 139 209 -15 1 1183 564 211 140 0 chr12 78496113 78496227 -42761303 + B3 SINE B2 1 130 -86 1 1183 28 29 0 0 chr12 78496241 78496276 -42761254 + AT_rich Low_complexity Low_complexity 1 35 0 1 1183 530 265 18 41 chr12 78496732 78496812 -42760718 - L1ME1 LINE L1 -337 5842 5765 1 1183 1260 131 0 5 chr12 78496812 78497004 -42760526 - B2_Mm2 SINE B2 -4 191 1 1 1183 530 265 18 41 chr12 78497004 78497143 -42760387 - L1ME1 LINE L1 -415 5764 5628 1 1183 1386 163 105 98 chr12 78497525 78497933 -42759597 - Lx7 LINE L1 -4 7692 7282 1 1183 230 259 19 0 chr12 78497937 78497991 -42759539 - RSINE1 SINE B4 -28 137 83 1 1183 334 273 81 0 chr12 78498045 78498206 -42759324 - L1ME1 LINE L1 -651 5522 5349 1 1183 305 291 80 23 chr12 78498332 78498420 -42759110 - B4 SINE B4 -199 93 1 1 1183 352 258 50 0 chr12 78498422 78498588 -42758942 - L1ME1 LINE L1 -815 5364 5187 1 1183 455 246 180 7 chr12 78498604 78498743 -42758787 - B3 SINE B2 -19 197 35 1 1183 356 277 11 0 chr12 78498972 78499066 -42758464 - L1ME1 LINE L1 -1365 4781 4687 1 1183 444 299 76 0 chr12 78499121 78499278 -42758252 - L1ME1 LINE L1 -1800 4346 4178 1 1183 740 278 120 23 chr12 78500031 78500473 -42757057 + L1MDa LINE L1 1081 1565 -5068 1 1183 369 264 99 27 chr12 78500503 78500725 -42756805 + L1MDa LINE L1 5540 5777 -760 1 1183 1780 28 0 5 chr12 78500725 78500940 -42756590 + L1Md_F3 LINE L1 6356 6569 -15 2 1183 902 286 96 33 chr12 78500950 78501431 -42756099 + L1ME1 LINE L1 5373 5883 -296 3 1183 925 230 0 0 chr12 78501530 78501691 -42755839 + B3 SINE B2 1 161 -55 4 1183 501 17 0 0 chr12 78501691 78501749 -42755781 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1183 660 212 76 0 chr12 78501889 78502021 -42755509 + RSINE1 SINE B4 2 143 -22 6 1183 236 277 76 8 chr12 78502231 78502362 -42755168 - L1MD3 LINE L1 -69 7926 7787 7 1183 25 0 0 0 chr12 78502362 78502387 -42755143 + AT_rich Low_complexity Low_complexity 1 25 0 8 1183 275 224 13 0 chr12 78502416 78502492 -42755038 + GA-rich Low_complexity Low_complexity 1 77 0 9 1183 2560 62 24 0 chr12 78504049 78504387 -42753143 - L1_Mus1 LINE L1 -2 6565 6220 1 1183 285 212 30 15 chr12 78504809 78504876 -42752654 + tRNA-Ala-GCY_ tRNA tRNA 6 73 -2 1 1183 254 282 108 72 chr12 78505271 78505382 -42752148 + PB1 SINE Alu 11 125 -2 1 1183 478 312 0 0 chr12 78505391 78505500 -42752030 + B1F2 SINE Alu 41 149 0 1 1183 301 234 62 0 chr12 78505575 78505639 -42751891 + ID4_ SINE ID 3 70 -13 1 1183 498 57 0 0 chr12 78505639 78505709 -42751821 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1183 369 0 0 0 chr12 78505709 78505749 -42751781 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 147 37960 29 0 0 chr12 78505849 78512288 -42745242 - L1Md_T LINE L1 0 6585 50 1 1184 324 0 0 0 chr12 78513127 78513163 -42744367 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1184 25 0 0 0 chr12 78514050 78514075 -42743455 + AT_rich Low_complexity Low_complexity 1 25 0 1 1184 515 307 0 17 chr12 78514091 78514207 -42743323 + PB1D10 SINE Alu 3 116 -1 2 1184 24 53 0 0 chr12 78514207 78514245 -42743285 + AT_rich Low_complexity Low_complexity 1 38 0 2 1184 247 243 28 14 chr12 78514435 78514506 -42743024 - MER5A1 DNA MER1_type -44 122 51 2 1184 202 299 15 0 chr12 78514525 78514592 -42742938 - MIRc SINE MIR -80 188 121 2 1184 267 325 78 13 chr12 78514837 78514990 -42742540 + MIR SINE MIR 74 236 -26 2 1184 2821 16 0 0 chr12 78514994 78515316 -42742214 + L1Md_A LINE L1 6261 6582 0 2 1184 619 181 43 8 chr12 78515424 78515541 -42741989 + B1_Mur2 SINE Alu 29 149 0 2 1184 21 89 0 0 chr12 78515617 78515673 -42741857 + AT_rich Low_complexity Low_complexity 1 56 0 2 1184 689 268 194 4 chr12 78515989 78516221 -42741309 + B4A SINE B4 5 280 -12 2 1184 477 0 0 0 chr12 78516249 78516302 -42741228 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1184 22 0 0 0 chr12 78516825 78516847 -42740683 + AT_rich Low_complexity Low_complexity 1 22 0 3 1184 659 263 62 11 chr12 78517421 78517598 -42739932 - B3 SINE B2 0 216 31 3 1184 1631 238 12 6 chr12 78517737 78518080 -42739450 + Lx5 LINE L1 6702 7046 -4 3 1184 26 30 0 0 chr12 78518350 78518383 -42739147 + AT_rich Low_complexity Low_complexity 1 33 0 3 1184 250 39 231 19 chr12 78518557 78518583 -42738947 + B2_Mm2 SINE B2 128 153 -42 3 1184 180 0 0 0 chr12 78518583 78518603 -42738927 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1184 250 39 231 19 chr12 78518603 78518628 -42738902 + B2_Mm2 SINE B2 154 190 -5 3 1184 745 209 31 7 chr12 78518947 78519139 -42738391 + ORR1C2 LTR MaLR 173 384 0 3 1184 755 193 7 32 chr12 78519403 78519558 -42737972 + U1 snRNA snRNA 1 151 -14 3 1184 285 274 145 3 chr12 78520157 78520294 -42737236 + MER58A DNA MER1_type 14 167 -57 3 1184 6961 130 14 22 chr12 78520372 78521540 -42735990 + L1_Mur2 LINE L1 3164 4321 -1556 3 1184 2052 82 13 10 chr12 78521536 78521848 -42735682 - Lx2 LINE L1 -954 6043 5716 4 1184 293 0 27 0 chr12 78522572 78522609 -42734921 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 4 1184 272 257 14 0 chr12 78522610 78522680 -42734850 + PB1D10 SINE Alu 42 112 -5 4 1184 261 0 0 0 chr12 78522959 78522988 -42734542 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 4 1184 1287 301 58 45 chr12 78522988 78523388 -42734142 - Lx5 LINE L1 -21 7029 6625 4 1184 21 0 0 0 chr12 78523455 78523476 -42734054 + AT_rich Low_complexity Low_complexity 1 21 0 4 1184 1103 77 6 49 chr12 78523479 78523643 -42733887 - B2_Mm1t SINE B2 -31 162 6 4 1184 257 302 78 21 chr12 78524258 78524400 -42733130 - Lx7 LINE L1 -13 7683 7534 4 1184 1967 97 7 0 chr12 78524475 78524763 -42732767 + Lx2 LINE L1 6707 6996 -1 4 1184 2508 255 31 23 chr12 78525082 78525535 -42731995 - Lx7 LINE L1 -444 7252 6794 4 1184 504 0 0 0 chr12 78525535 78525591 -42731939 + (TCCC)n Simple_repeat Simple_repeat 1 56 0 4 1184 621 0 0 0 chr12 78525591 78525660 -42731870 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 5 1184 1028 39 78 0 chr12 78525662 78525791 -42731739 - B1_Mus2 SINE Alu -6 141 3 5 1184 2508 255 31 23 chr12 78525791 78525983 -42731547 - Lx7 LINE L1 -903 6793 6599 4 1184 22 35 0 0 chr12 78526738 78526767 -42730763 + AT_rich Low_complexity Low_complexity 1 29 0 5 1184 30 27 0 0 chr12 78527845 78527882 -42729648 + AT_rich Low_complexity Low_complexity 1 37 0 5 1184 506 262 81 72 chr12 78528143 78528498 -42729032 - RMER10A LTR ERVL -25 417 43 5 1184 24 0 0 0 chr12 78529713 78529737 -42727793 + AT_rich Low_complexity Low_complexity 1 24 0 5 1184 22 70 0 0 chr12 78529810 78529853 -42727677 + AT_rich Low_complexity Low_complexity 1 43 0 5 1184 470 259 25 17 chr12 78530032 78530136 -42727394 + PB1D9 SINE Alu 2 106 -14 5 1184 270 0 0 0 chr12 78530136 78530166 -42727364 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 5 1184 470 259 25 17 chr12 78530166 78530179 -42727351 + PB1D9 SINE Alu 107 119 -1 5 1184 296 321 30 6 chr12 78530183 78530349 -42727181 - L1MC2 LINE L1 -204 6558 6389 5 1184 894 239 125 54 chr12 78530349 78530645 -42726885 + MTD LTR MaLR 1 317 -102 6 1184 1200 257 73 23 chr12 78530695 78531093 -42726437 - L1MC2 LINE L1 -366 6396 5979 5 1184 400 320 88 56 chr12 78531111 78531326 -42726204 - MLT1A LTR MaLR -22 352 131 6 1184 488 338 84 14 chr12 78531329 78531374 -42726156 - MT2A LTR ERVL 0 533 471 6 1184 360 0 0 0 chr12 78531374 78531414 -42726116 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1184 488 338 84 14 chr12 78531414 78531581 -42725949 - MT2A LTR ERVL -63 470 306 6 1184 363 253 33 11 chr12 78531716 78531808 -42725722 - ERVL-int LTR ERVL -761 4996 4903 6 1184 501 348 19 52 chr12 78531916 78532128 -42725402 - MTE-int LTR MaLR -957 623 419 6 1184 241 342 55 0 chr12 78532121 78532194 -42725336 - ORR1E LTR MaLR -282 77 1 6 1184 353 257 16 74 chr12 78532210 78532332 -42725198 - MLT1A LTR MaLR -255 119 5 6 1184 403 314 124 53 chr12 78532513 78532812 -42724718 - ORR1D2 LTR MaLR -7 363 44 6 1184 1041 245 192 71 chr12 78532866 78533710 -42723820 - L1MC2 LINE L1 -3076 3488 2543 5 1184 675 250 158 7 chr12 78534132 78534410 -42723120 - L1MC2 LINE L1 -4230 2521 2202 5 1184 799 286 20 25 chr12 78534430 78534627 -42722903 + ID_B1 SINE B4 2 197 -27 6 1184 299 221 101 31 chr12 78534699 78534858 -42722672 - Lx9 LINE L1 -3 7641 7472 6 1184 270 81 0 0 chr12 78534872 78534909 -42722621 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1184 408 316 25 55 chr12 78534912 78535113 -42722417 - Lx9 LINE L1 -263 7381 7187 6 1184 442 315 21 0 chr12 78535142 78535285 -42722245 + CT-rich Low_complexity Low_complexity 3 148 0 7 1184 341 221 153 60 chr12 78535365 78535548 -42721982 - L1MC2 LINE L1 -4895 1856 1657 5 1184 438 256 73 93 chr12 78535694 78535845 -42721685 + B1_Mur2 SINE Alu 2 149 0 7 1184 339 232 122 40 chr12 78535901 78536049 -42721481 - L1MC2 LINE L1 -5019 1626 1467 5 1184 860 285 155 11 chr12 78536169 78536777 -42720753 - L1MC2 LINE L1 -5378 1373 604 5 1184 204 280 64 39 chr12 78537732 78537810 -42719720 - L2a LINE L2 0 3426 3347 7 1184 419 307 218 59 chr12 78538876 78539115 -42718415 - B4 SINE B4 -13 279 3 7 1184 545 291 14 29 chr12 78539750 78539888 -42717642 - RSINE1 SINE B4 -14 151 16 7 1184 216 297 12 86 chr12 78539817 78539898 -42717632 - B3A SINE B2 -116 82 8 7 1184 1266 33 19 14 chr12 78540046 78540483 -42717047 + (CA)n Simple_repeat Simple_repeat 1 439 0 7 1184 978 281 36 82 chr12 78541646 78541721 -42715809 - B4A SINE B4 0 292 222 7 1184 486 0 0 0 chr12 78541721 78541775 -42715755 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1184 978 281 36 82 chr12 78541775 78542005 -42715525 - B4A SINE B4 -71 221 1 7 1184 244 288 129 54 chr12 78542106 78542253 -42715277 - MIR SINE MIR -95 167 10 8 1184 291 270 13 26 chr12 78542838 78542914 -42714616 + polypyrimidine Low_complexity Low_complexity 4 78 0 8 1184 8968 104 7 38 chr12 78542999 78544581 -42712949 - Lx3C LINE L1 -18 6958 5437 8 1184 288 58 19 0 chr12 78544821 78544873 -42712657 + L1Md_F3 LINE L1 6530 6582 -2 8 1184 1487 238 163 58 chr12 78544902 78545954 -42711576 - L1M2 LINE L1 -731 5581 4421 8 1184 504 190 102 87 chr12 78545954 78546150 -42711380 + Lx5 LINE L1 6844 7042 -8 8 1184 347 242 78 31 chr12 78546155 78546283 -42711247 - L1M5 LINE L1 -1712 4434 4301 8 1184 596 234 99 19 chr12 78546293 78546506 -42711024 + L1MA7 LINE L1 5875 6104 -187 8 1184 477 0 0 0 chr12 78546838 78546891 -42710639 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1184 441 0 0 0 chr12 78546891 78546939 -42710591 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1184 390 259 36 36 chr12 78547557 78547669 -42709861 - PB1D10 SINE Alu -3 114 3 9 1184 180 0 0 0 chr12 78547674 78547694 -42709836 + (TC)n Simple_repeat Simple_repeat 2 21 0 9 1184 207 0 0 0 chr12 78547943 78547966 -42709564 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 9 1184 204 40 0 0 chr12 78548153 78548178 -42709352 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1184 315 0 0 0 chr12 78548178 78548212 -42709318 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1184 1126 53 7 0 chr12 78548258 78548408 -42709122 - L1Md_F2 LINE L1 -12 6570 6420 9 1184 21 0 0 0 chr12 78548614 78548635 -42708895 + AT_rich Low_complexity Low_complexity 1 21 0 9 1184 1167 61 0 0 chr12 78548635 78548783 -42708747 - B1_Mus1 SINE Alu 0 148 1 9 1184 21 0 0 0 chr12 78550654 78550675 -42706855 + AT_rich Low_complexity Low_complexity 1 21 0 9 1184 505 240 53 23 chr12 78551547 78551679 -42705851 - MLT1B LTR MaLR -12 378 243 9 1184 288 0 0 0 chr12 78552175 78552207 -42705323 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1184 461 187 0 13 chr12 78552683 78552759 -42704771 - ID_B1 SINE B4 -7 217 143 1 1184 25 90 0 0 chr12 78552759 78552826 -42704704 + AT_rich Low_complexity Low_complexity 1 67 0 1 1184 1190 54 0 0 chr12 78552919 78553067 -42704463 + B1_Mus1 SINE Alu 1 148 0 1 1184 294 95 0 0 chr12 78553067 78553109 -42704421 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1184 418 315 75 20 chr12 78554419 78554565 -42702965 - ID_B1 SINE B4 -69 155 2 1 1184 330 87 0 0 chr12 78554783 78554829 -42702701 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1184 918 252 76 35 chr12 78554865 78555206 -42702324 - L1M2 LINE L1 -577 5735 5381 1 1184 3085 268 116 65 chr12 78555210 78557088 -42700442 - L1M2 LINE L1 -869 5274 3303 1 1184 623 57 0 11 chr12 78557128 78557217 -42700313 + (TAG)n Simple_repeat Simple_repeat 2 89 0 1 1184 291 275 117 48 chr12 78557220 78557365 -42700165 - RSINE1 SINE B4 -5 160 6 1 1184 776 269 158 35 chr12 78557427 78557944 -42699586 - L1M2 LINE L1 -2931 3212 2615 1 1184 635 291 16 5 chr12 78557944 78558134 -42699396 - B3A SINE B2 -5 193 2 1 1184 776 269 158 35 chr12 78558134 78558272 -42699258 - L1M2 LINE L1 -3529 2614 2476 1 1184 212 262 0 0 chr12 78558322 78558364 -42699166 - PB1D10 SINE Alu -14 103 62 1 1184 369 223 77 10 chr12 78559615 78559719 -42697811 + B1F SINE Alu 33 143 -6 1 1184 5301 170 46 5 chr12 78559909 78560749 -42696781 - Lx3C LINE L1 -2 6974 6091 1 1184 506 29 0 14 chr12 78560749 78560818 -42696712 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1184 5301 170 46 5 chr12 78560818 78560960 -42696570 - Lx3C LINE L1 -886 6090 5953 1 1184 191 61 30 0 chr12 78561419 78561452 -42696078 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1184 1124 69 14 0 chr12 78561452 78561596 -42695934 - B1_Mus2 SINE Alu 0 147 2 1 1184 205 289 0 0 chr12 78562387 78562439 -42695091 - L2a LINE L2 -11 3415 3364 1 1184 8164 57 5 3 chr12 78562523 78563738 -42693792 - L1_Mus1 LINE L1 0 6567 5353 1 1184 311 317 38 9 chr12 78564323 78564428 -42693102 - PB1D10 SINE Alu -8 109 2 1 1184 1703 210 188 5 chr12 78564549 78564985 -42692545 + Lx5 LINE L1 6535 7050 0 1 1184 207 0 0 0 chr12 78566137 78566160 -42691370 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1184 515 347 87 39 chr12 78566183 78566495 -42691035 - LTR86B2 LTR ERVL -7 480 154 1 1184 396 0 0 0 chr12 78566527 78566571 -42690959 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1184 664 126 15 15 chr12 78566573 78566710 -42690820 + Lx9 LINE L1 7507 7643 -1 1 1184 351 233 0 0 chr12 78566738 78566798 -42690732 + RSINE1 SINE B4 4 63 -102 1 1184 23 0 0 0 chr12 78566836 78566859 -42690671 + AT_rich Low_complexity Low_complexity 1 23 0 1 1184 304 237 79 0 chr12 78567026 78567102 -42690428 - MER20 DNA MER1_type -137 82 1 1 1184 1130 176 39 5 chr12 78567533 78567738 -42689792 + B3 SINE B2 3 214 -2 1 1184 688 112 34 17 chr12 78568034 78568152 -42689378 - B1_Mus1 SINE Alu -1 147 28 1 1184 2806 141 19 56 chr12 78568275 78568860 -42688670 - RMER6A LTR ERVK 0 756 194 1 1184 1077 254 159 14 chr12 78569279 78569643 -42687887 - MTC LTR MaLR 0 421 5 1 1184 310 232 0 42 chr12 78569789 78569861 -42687669 - ID4_ SINE ID -12 71 3 1 1184 1868 86 0 4 chr12 78570342 78570353 -42687177 + L1_Mus3 LINE L1 5864 5874 -764 1 1184 4049 58 4 2 chr12 78570353 78570855 -42686675 - L1_Mus3 LINE L1 -8 6630 6128 1 1184 1868 86 0 4 chr12 78570855 78571099 -42686431 + L1_Mus3 LINE L1 5875 6118 -520 1 1184 1174 190 10 0 chr12 78571258 78571463 -42686067 + B3 SINE B2 2 208 -8 1 1184 234 250 0 0 chr12 78572647 78572707 -42684823 - L2a LINE L2 -3 3423 3364 1 1184 250 266 90 17 chr12 78572795 78572936 -42684594 + MIR SINE MIR 97 251 -17 1 1184 182 298 35 0 chr12 78573447 78573504 -42684026 + MIR SINE MIR 42 100 -162 1 1184 240 224 66 9 chr12 78573941 78574015 -42683515 + ID4_ SINE ID 15 89 -63 1 1184 613 240 75 43 chr12 78574681 78574868 -42682662 + B3A SINE B2 5 197 -1 1 1184 2390 171 102 16 chr12 78574895 78575383 -42682147 - Lx4B LINE L1 -8 7050 6521 1 1184 739 166 7 80 chr12 78575377 78575528 -42682002 - Lx4B LINE L1 -689 6369 6230 1 1184 24 85 0 0 chr12 78575709 78575768 -42681762 + AT_rich Low_complexity Low_complexity 1 59 0 1 1184 191 125 25 0 chr12 78575779 78575819 -42681711 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 1 1184 228 35 0 0 chr12 78575828 78575857 -42681673 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1184 656 194 57 14 chr12 78577685 78577826 -42679704 - B1_Mur1 SINE Alu -1 148 2 1 1184 184 30 61 0 chr12 78578581 78578614 -42678916 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1184 485 216 79 26 chr12 78578637 78578751 -42678779 - PB1D7 SINE Alu 0 120 1 1 1184 342 331 91 93 chr12 78578751 78579104 -42678426 - L1MEb LINE L1 -5458 612 261 1 1184 611 312 5 21 chr12 78581950 78582140 -42675390 + MER58A DNA MER1_type 38 224 0 1 1184 300 210 149 0 chr12 78582543 78582689 -42674841 - ID_B1 SINE B4 -2 222 8 1 1184 290 222 115 48 chr12 78582994 78583098 -42674432 - MIRb SINE MIR -27 241 131 1 1184 23 0 0 0 chr12 78584825 78584848 -42672682 + AT_rich Low_complexity Low_complexity 1 23 0 1 1184 354 374 18 45 chr12 78585290 78585514 -42672016 + MLT1J2 LTR MaLR 169 386 -62 1 1184 550 307 66 0 chr12 78585681 78585909 -42671621 - MIR SINE MIR -18 244 2 1 1184 614 185 8 0 chr12 78586634 78586764 -42670766 + GA-rich Low_complexity Low_complexity 3 133 0 1 1184 1281 158 0 5 chr12 78587066 78587282 -42670248 + Lx2 LINE L1 6783 6997 0 1 1184 310 222 111 0 chr12 78587415 78587496 -42670034 + MIR SINE MIR 162 251 -11 1 1184 258 173 77 0 chr12 78588088 78588140 -42669390 - MIRb SINE MIR -194 74 19 1 1184 1142 198 80 141 chr12 78588333 78588658 -42668872 - MTE2a LTR MaLR -14 365 55 1 1184 2244 160 59 34 chr12 78588658 78589066 -42668464 + MTC LTR MaLR 1 418 -3 1 1184 1142 198 80 141 chr12 78589066 78589129 -42668401 - MTE2a LTR MaLR -325 54 1 1 1184 199 300 181 23 chr12 78589494 78589627 -42667903 - MIRc SINE MIR -52 216 63 1 1184 417 214 12 12 chr12 78589858 78589956 -42667574 - B1F2 SINE Alu -47 102 5 1 1184 238 279 59 67 chr12 78589956 78589977 -42667553 - B4A SINE B4 -101 191 74 1 1184 392 211 26 0 chr12 78590207 78590283 -42667247 - URR1B DNA MER1_type -113 112 35 1 1184 21 0 0 0 chr12 78590283 78590304 -42667226 + AT_rich Low_complexity Low_complexity 1 21 0 1 1184 733 127 30 0 chr12 78590304 78590438 -42667092 + URR1A DNA MER1_type 84 221 -5 1 1184 511 314 134 21 chr12 78590834 78591371 -42666159 - L2a LINE L2 -11 3415 2813 1 1184 664 285 23 37 chr12 78591397 78591612 -42665918 + B4A SINE B4 3 214 -78 1 1184 327 85 0 0 chr12 78591622 78591669 -42665861 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1184 441 0 0 0 chr12 78591669 78591717 -42665813 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1184 248 226 0 0 chr12 78592191 78592244 -42665286 + MIRm SINE MIR 91 143 -133 1 1184 708 249 158 51 chr12 78592290 78592701 -42664829 - L1MA9 LINE L1 -40 6272 5818 1 1184 1293 246 89 36 chr12 78592725 78593263 -42664267 + L1M3 LINE L1 5155 5723 -466 1 1184 222 118 0 0 chr12 78593445 78593479 -42664051 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1184 333 379 72 65 chr12 78594641 78594793 -42662737 - LTR33B LTR ERVL -17 486 333 1 1184 987 218 132 113 chr12 78594793 78595165 -42662365 - MTE2b LTR MaLR 0 379 1 1 1184 333 379 72 65 chr12 78595165 78595455 -42662075 - LTR33B LTR ERVL -171 332 41 1 1184 456 19 0 0 chr12 78595703 78595756 -42661774 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1184 317 272 29 10 chr12 78595765 78595869 -42661661 + LTR33B LTR ERVL 382 487 -16 1 1184 420 37 0 0 chr12 78595916 78595970 -42661560 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1 1184 24 96 0 0 chr12 78596019 78596092 -42661438 + AT_rich Low_complexity Low_complexity 1 73 0 1 1184 525 264 153 37 chr12 78596102 78596370 -42661160 + L1ME4a LINE L1 5770 6068 -56 1 1184 666 137 0 25 chr12 78596622 78596742 -42660788 - B1_Mur4 SINE Alu 0 150 34 1 1184 244 231 77 29 chr12 78597105 78597196 -42660334 + ORR1D2 LTR MaLR 276 369 -5 1 1184 1096 234 162 6 chr12 78597744 78598096 -42659434 + MTD LTR MaLR 1 407 -12 1 1184 234 0 0 0 chr12 78598455 78598481 -42659049 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1184 416 309 138 48 chr12 78599395 78599749 -42657781 + LTR33 LTR ERVL 19 404 -111 1 1184 271 350 74 32 chr12 78599883 78600072 -42657458 + ORR1E LTR MaLR 9 205 -154 1 1184 1213 144 119 0 chr12 78600172 78600374 -42657156 - URR1A DNA MER1_type 0 226 1 1 1184 236 296 155 9 chr12 78600464 78600580 -42656950 + MIRm SINE MIR 21 153 -123 1 1184 261 0 0 0 chr12 78601969 78601998 -42655532 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1184 380 273 0 22 chr12 78602294 78602384 -42655146 + PB1D10 SINE Alu 3 90 -27 1 1184 254 95 24 0 chr12 78602390 78602432 -42655098 + (CAA)n Simple_repeat Simple_repeat 1 43 0 1 1184 337 287 57 8 chr12 78603510 78603633 -42653897 - MER76 LTR ERVL -2 689 561 1 1184 453 36 0 0 chr12 78603826 78603881 -42653649 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1184 284 217 78 107 chr12 78603886 78603987 -42653543 - MER76 LTR ERVL -572 119 22 1 1184 1324 262 57 42 chr12 78603987 78604492 -42653038 + MER34A1 LTR ERV1 3 515 -72 1 1184 766 311 122 46 chr12 78604601 78605083 -42652447 - MLT1F2 LTR MaLR -2 558 40 1 1184 392 274 112 86 chr12 78606133 78606365 -42651165 + MTEb LTR MaLR 75 312 -67 1 1184 907 262 137 3 chr12 78606476 78606805 -42650725 + MER68 LTR ERVL 36 408 -155 1 1184 2347 119 19 81 chr12 78607470 78607889 -42649641 - ORR1B1 LTR MaLR -1 393 1 1 1184 249 276 71 0 chr12 78608357 78608455 -42649075 + MLT2B1 LTR ERVL 343 447 -120 1 1184 505 108 36 0 chr12 78608500 78608611 -42648919 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 2 1184 270 243 0 105 chr12 78608708 78609099 -42648431 + (CCTCG)n Simple_repeat Simple_repeat 1 350 0 2 1184 386 277 10 0 chr12 78609457 78609558 -42647972 + MER110A LTR ERV1 45 146 -322 2 1184 422 268 0 0 chr12 78609563 78609660 -42647870 + MLT2C2 LTR ERVL 2 98 -366 2 1184 316 288 81 29 chr12 78610114 78610250 -42647280 + B1F2 SINE Alu 1 143 -6 2 1184 272 194 98 39 chr12 78610763 78610865 -42646665 + MTEa LTR MaLR 272 379 0 2 1184 419 221 41 21 chr12 78611077 78611174 -42646356 - PB1D10 SINE Alu -18 99 1 2 1184 189 0 0 0 chr12 78612232 78612253 -42645277 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 2 1184 180 0 0 0 chr12 78612572 78612592 -42644938 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1184 554 342 0 25 chr12 78612965 78613124 -42644406 - RSINE1 SINE B4 -1 164 10 2 1184 261 0 0 0 chr12 78613668 78613697 -42643833 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1184 396 190 34 17 chr12 78613787 78613905 -42643625 - Lx9 LINE L1 -67 7577 7458 2 1184 3290 182 64 9 chr12 78613915 78614591 -42642939 - Lx9 LINE L1 -127 7517 6805 2 1184 268 343 40 46 chr12 78614874 78615048 -42642482 + ORR1E LTR MaLR 19 191 -168 2 1184 880 179 0 0 chr12 78615252 78615386 -42642144 - B1_Mur3 SINE Alu -14 135 2 2 1184 391 248 94 81 chr12 78615386 78615414 -42642116 - MT2B LTR ERVL -444 157 128 2 1184 378 0 0 0 chr12 78615705 78615747 -42641783 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1184 253 280 101 77 chr12 78615779 78615988 -42641542 + MamRep605 Unknown Unknown 58 271 -605 2 1184 373 335 40 84 chr12 78616815 78617066 -42640464 - MIR SINE MIR -1 261 22 2 1184 22 0 0 0 chr12 78617219 78617241 -42640289 + AT_rich Low_complexity Low_complexity 1 22 0 2 1184 24 0 0 0 chr12 78617332 78617356 -42640174 + AT_rich Low_complexity Low_complexity 1 24 0 2 1184 423 255 0 37 chr12 78619969 78620293 -42637237 + G-rich Low_complexity Low_complexity 1 311 0 2 1184 476 267 0 58 chr12 78620327 78620764 -42636766 + G-rich Low_complexity Low_complexity 1 411 0 2 1184 187 299 247 0 chr12 78620828 78620905 -42636625 - L2b LINE L2 -302 3073 2978 2 1184 1268 199 221 58 chr12 78621095 78621580 -42635950 + RMER4B LTR ERVK 17 580 -5 2 1184 37915 68 11 13 chr12 78621738 78627916 -42629614 - L1Md_F3 LINE L1 -15 6569 409 2 1184 869 272 17 102 chr12 78628373 78628505 -42629025 - MLT1A0 LTR MaLR -94 271 154 2 1184 465 222 64 18 chr12 78628505 78628615 -42628915 - PB1D10 SINE Alu -1 116 2 2 1184 869 272 17 102 chr12 78628615 78628777 -42628753 - MLT1A0 LTR MaLR -212 153 2 2 1184 237 381 84 14 chr12 78629346 78629512 -42628018 + MIRm SINE MIR 4 183 -85 2 1184 183 156 0 0 chr12 78629756 78629788 -42627742 + T-rich Low_complexity Low_complexity 1 32 0 2 1184 251 329 65 71 chr12 78630318 78630488 -42627042 - L2c LINE L2 -80 3307 3139 2 1184 383 0 0 21 chr12 78630702 78630750 -42626780 + (TGG)n Simple_repeat Simple_repeat 1 47 0 2 1184 225 0 0 0 chr12 78630750 78630775 -42626755 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1184 275 219 37 37 chr12 78630785 78630894 -42626636 + (TATG)n Simple_repeat Simple_repeat 1 109 0 2 1184 375 169 21 10 chr12 78630894 78630990 -42626540 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 1184 229 140 35 0 chr12 78631008 78631065 -42626465 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1184 301 366 58 29 chr12 78631324 78631462 -42626068 - L2a LINE L2 -7 3419 3278 2 1184 318 287 38 62 chr12 78631759 78631919 -42625611 - L2a LINE L2 -650 2769 2614 2 1184 253 317 71 53 chr12 78632109 78632279 -42625251 - MIR SINE MIR -64 198 26 2 1184 761 226 70 43 chr12 78632547 78632601 -42624929 - ID_B1 SINE B4 -33 191 130 2 1184 2279 147 104 5 chr12 78632601 78632984 -42624546 + MTC LTR MaLR 1 421 0 2 1184 761 226 70 43 chr12 78632984 78633114 -42624416 - ID_B1 SINE B4 -95 129 2 2 1184 1135 164 14 46 chr12 78633379 78633597 -42623933 + B3 SINE B2 5 215 -1 2 1184 2264 119 64 19 chr12 78635663 78636040 -42621490 - ORR1B1 LTR MaLR 0 394 1 2 1184 195 235 19 19 chr12 78636209 78636261 -42621269 - MIR SINE MIR -5 257 206 2 1184 239 304 131 75 chr12 78637412 78637572 -42619958 - L2b LINE L2 -17 3358 3190 2 1184 468 206 11 11 chr12 78637791 78637884 -42619646 - RMER15 LTR ERVL -89 486 394 2 1184 254 380 54 34 chr12 78638818 78638965 -42618565 + MIRm SINE MIR 2 151 -125 2 1184 318 308 102 114 chr12 78639770 78640034 -42617496 + MLT1A LTR MaLR 68 328 -46 2 1184 185 288 119 48 chr12 78640384 78640468 -42617062 - MER5A DNA MER1_type -8 181 92 2 1184 216 301 22 78 chr12 78641248 78641338 -42616192 + MIRb SINE MIR 132 216 -52 2 18 355 345 209 0 chr12 78643042 78643277 -42614253 - LTR16D1 LTR ERVL -242 433 150 2 1185 275 348 67 62 chr12 78643868 78644092 -42613438 + MLT1K LTR MaLR 216 440 -155 2 1185 247 219 89 143 chr12 78646042 78646154 -42611376 + RLTR13A3 LTR ERVK 78 183 -795 2 1185 4217 51 2 10 chr12 78646369 78646888 -42610642 + L1_Mus2 LINE L1 6052 6566 0 2 1185 394 268 146 0 chr12 78647803 78647926 -42609604 - MIRb SINE MIR -104 164 24 2 1185 38608 30 0 0 chr12 78648112 78654760 -42602770 - L1Md_T LINE L1 0 6585 1 2 1185 331 321 89 11 chr12 78654867 78655147 -42602383 - L1ME3B LINE L1 -340 5900 5599 2 1185 239 302 11 23 chr12 78656251 78656339 -42601191 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 2 1185 196 323 81 44 chr12 78656339 78656475 -42601055 + L2c LINE L2 3207 3347 -40 2 1185 964 263 39 21 chr12 78657185 78657465 -42600065 - B4A SINE B4 -4 288 4 2 1185 351 308 45 58 chr12 78657690 78657845 -42599685 - MER44B DNA MER2_type -339 211 59 2 1185 418 257 155 52 chr12 78657897 78658090 -42599440 + MIRb SINE MIR 14 226 -42 2 1185 423 38 0 0 chr12 78658166 78658219 -42599311 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1185 204 264 45 18 chr12 78658230 78658342 -42599188 + (CATATA)n Simple_repeat Simple_repeat 2 116 0 2 1185 427 240 137 15 chr12 78659090 78659221 -42598309 - MIR SINE MIR -81 181 35 2 1185 2222 136 48 8 chr12 78659414 78659769 -42597761 + ORR1B1 LTR MaLR 17 385 -9 2 1185 561 138 0 0 chr12 78660486 78660580 -42596950 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 1185 270 256 60 24 chr12 78660631 78660715 -42596815 - MLT1A1 LTR MaLR 0 408 322 2 1185 494 322 100 49 chr12 78660802 78661453 -42596077 + L2a LINE L2 2722 3411 -15 2 1185 447 181 53 11 chr12 78661478 78661494 -42596036 + MTD LTR MaLR 83 99 -320 2 1185 1345 160 4 0 chr12 78661494 78661719 -42595811 - URR1A DNA MER1_type 0 226 1 2 1185 447 181 53 11 chr12 78661719 78661797 -42595733 + MTD LTR MaLR 100 180 -239 2 1185 455 337 36 15 chr12 78662840 78663036 -42594494 - MIR3 SINE MIR -6 202 3 2 1185 246 246 0 0 chr12 78663039 78663096 -42594434 + MIRc SINE MIR 195 251 -17 2 1185 1131 255 122 3 chr12 78663307 78663610 -42593920 + MER2 DNA MER2_type 1 339 -6 2 1185 1050 100 0 0 chr12 78664540 78664720 -42592810 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1185 275 418 59 10 chr12 78665433 78665636 -42591894 - MLT1K LTR MaLR -21 574 362 2 1185 192 77 0 0 chr12 78665719 78665745 -42591785 + (CAT)n Simple_repeat Simple_repeat 1 26 0 2 1185 258 81 0 0 chr12 78665758 78665795 -42591735 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1185 1297 150 32 14 chr12 78667093 78667310 -42590220 - URR1B DNA MER1_type 0 225 5 2 1185 261 0 0 0 chr12 78668742 78668771 -42588759 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1185 321 26 0 0 chr12 78668771 78668808 -42588722 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1185 297 0 0 0 chr12 78671913 78671946 -42585584 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 2 1185 185 171 98 0 chr12 78673314 78673355 -42584175 - L2 LINE L2 -670 2749 2705 2 1185 639 249 61 15 chr12 78675075 78675271 -42582259 + B3 SINE B2 3 207 -9 2 1185 288 0 0 0 chr12 78675271 78675303 -42582227 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 2 1185 188 155 138 0 chr12 78675497 78675555 -42581975 + MIRm SINE MIR 77 142 -134 2 1185 412 258 107 35 chr12 78676351 78676520 -42581010 - MIRb SINE MIR -2 266 86 2 1185 254 203 17 17 chr12 78676943 78677003 -42580527 + CT-rich Low_complexity Low_complexity 1 60 0 2 1185 25 31 0 0 chr12 78677035 78677067 -42580463 + AT_rich Low_complexity Low_complexity 1 32 0 2 1185 195 162 0 0 chr12 78678467 78678504 -42579026 + GA-rich Low_complexity Low_complexity 2 38 0 2 1185 666 118 0 0 chr12 78678516 78678618 -42578912 + (GAA)n Simple_repeat Simple_repeat 1 102 0 2 1185 360 0 0 0 chr12 78678992 78679032 -42578498 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1185 274 258 0 0 chr12 78679039 78679101 -42578429 + MER5A DNA MER1_type 128 189 0 2 1185 6897 190 31 6 chr12 78679819 78681909 -42575621 - Lx5 LINE L1 -53 7407 4864 2 1185 14123 155 27 33 chr12 78681900 78682550 -42574980 - Lx5 LINE L1 -1959 3918 3287 2 1185 805 103 17 8 chr12 78682550 78682668 -42574862 - PB1D9 SINE Alu 0 120 2 2 1185 14123 163 32 35 chr12 78682668 78685057 -42572473 - Lx5 LINE L1 -2591 3286 888 2 1185 348 70 27 27 chr12 78685092 78685166 -42572364 + (TTTTG)n Simple_repeat Simple_repeat 3 76 0 2 1185 418 249 220 38 chr12 78685978 78686187 -42571343 + RMER21B LTR ERV1 323 569 -273 2 1185 21 57 0 0 chr12 78686461 78686496 -42571034 + AT_rich Low_complexity Low_complexity 1 35 0 2 1185 3106 135 25 23 chr12 78687019 78687542 -42569988 - RLTR28 LTR ERVL 0 524 1 2 1185 355 257 194 0 chr12 78688568 78688743 -42568787 + MER63B DNA AcHobo 1 209 -227 2 1185 279 272 99 0 chr12 78688826 78688907 -42568623 + MER63B DNA AcHobo 348 436 0 2 1185 180 0 0 0 chr12 78690228 78690248 -42567282 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2 1185 39 0 0 0 chr12 78691149 78691188 -42566342 + AT_rich Low_complexity Low_complexity 1 39 0 2 1185 2933 93 7 32 chr12 78691188 78691630 -42565900 - L1_Mus3 LINE L1 -10 6628 6198 3 1185 2879 112 10 83 chr12 78691630 78692126 -42565404 + L1_Mus3 LINE L1 5710 6169 -469 3 1185 1411 214 133 19 chr12 78692235 78692611 -42564919 + MTD LTR MaLR 1 419 0 3 1185 182 220 65 48 chr12 78696083 78696145 -42561385 - MIRm SINE MIR -101 175 113 3 1185 203 352 41 0 chr12 78696276 78696421 -42561109 + L3 LINE CR1 4066 4216 -273 3 1185 267 224 146 109 chr12 78696691 78696801 -42560729 - PB1D10 SINE Alu -35 114 1 3 1185 26 0 0 0 chr12 78696830 78696856 -42560674 + AT_rich Low_complexity Low_complexity 1 26 0 3 1185 549 30 0 0 chr12 78698455 78698522 -42559008 + (GGATG)n Simple_repeat Simple_repeat 1 67 0 3 1185 468 332 51 61 chr12 78698618 78698929 -42558601 - MLT1D LTR MaLR -46 459 152 3 1185 259 200 20 0 chr12 78698960 78699010 -42558520 - ID4_ SINE ID -9 74 24 3 1185 246 306 155 36 chr12 78699191 78699384 -42558146 - MIRb SINE MIR 0 268 53 3 1185 548 200 9 0 chr12 78699813 78699918 -42557612 - B4A SINE B4 -60 232 127 3 1185 1718 201 65 44 chr12 78699981 78700414 -42557116 - RMER10A LTR ERVL 0 442 1 3 1185 349 211 126 100 chr12 78700857 78701047 -42556483 - RLTR19-int LTR ERVK -2274 3863 3669 3 1185 22 56 0 0 chr12 78703066 78703102 -42554428 + AT_rich Low_complexity Low_complexity 1 36 0 3 1185 373 312 67 15 chr12 78703416 78703611 -42553919 + LTR33 LTR ERVL 309 513 -2 3 1185 357 154 22 11 chr12 78703720 78703812 -42553718 + CT-rich Low_complexity Low_complexity 3 95 0 3 1185 654 208 0 0 chr12 78703843 78703987 -42553543 + (TA)n Simple_repeat Simple_repeat 2 145 0 3 1185 454 232 10 0 chr12 78703994 78704093 -42553437 - B4A SINE B4 -72 220 121 3 1185 361 260 96 39 chr12 78705754 78705910 -42551620 - MIRb SINE MIR -69 199 35 3 1185 351 340 28 79 chr12 78706122 78706374 -42551156 + ORR1E LTR MaLR 9 247 -112 3 1185 286 303 72 18 chr12 78706485 78706596 -42550934 + ORR1E LTR MaLR 232 348 -11 3 1185 330 26 0 0 chr12 78706596 78706635 -42550895 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1185 1106 56 42 0 chr12 78706641 78706783 -42550747 + B1_Mus1 SINE Alu 1 148 0 3 1185 384 77 0 0 chr12 78706783 78706835 -42550695 + (CAAAA)n Simple_repeat Simple_repeat 1 52 0 3 1185 376 284 0 44 chr12 78706863 78706977 -42550553 - PB1D10 SINE Alu -1 116 8 3 1185 1862 184 24 45 chr12 78707544 78707926 -42549604 - ORR1D1 LTR MaLR 0 374 1 3 1185 888 158 212 0 chr12 78708005 78708189 -42549341 + URR1B DNA MER1_type 3 225 0 3 1185 517 243 21 21 chr12 78708672 78708815 -42548715 - ID_B1 SINE B4 0 224 82 3 1185 615 206 103 5 chr12 78709495 78709680 -42547850 + ORSL-2a DNA Tip100 28 230 -112 3 1185 601 240 168 15 chr12 78709755 78710017 -42547513 - LTR37A LTR ERV1 -21 405 104 3 1185 1424 183 43 56 chr12 78710396 78710755 -42546775 + ORR1D1 LTR MaLR 15 349 -25 3 1185 339 232 14 0 chr12 78710755 78710824 -42546706 - MER31-int LTR ERV1 -912 4024 3955 3 1185 299 176 11 32 chr12 78711892 78711986 -42545544 + CT-rich Low_complexity Low_complexity 1 92 0 3 1185 326 245 0 10 chr12 78712727 78712826 -42544704 + CT-rich Low_complexity Low_complexity 4 101 0 3 1185 255 200 54 54 chr12 78712939 78713013 -42544517 + Lx9 LINE L1 7084 7157 -487 3 1185 501 195 124 0 chr12 78713133 78713246 -42544284 + B1F SINE Alu 11 137 -12 3 1185 1598 234 159 52 chr12 78713252 78713788 -42543742 + RMER20B LTR ERVK 10 602 -25 3 1185 1163 101 0 16 chr12 78713843 78714025 -42543505 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 1185 432 55 0 0 chr12 78714031 78714086 -42543444 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1185 1138 58 0 0 chr12 78714086 78714223 -42543307 - B1_Mus1 SINE Alu -10 138 2 3 1185 317 258 0 0 chr12 78714902 78714968 -42542562 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 3 1185 409 219 38 23 chr12 78715083 78715214 -42542316 - MER31-int LTR ERV1 -3488 1448 1316 3 1185 22 0 0 0 chr12 78715261 78715283 -42542247 + AT_rich Low_complexity Low_complexity 1 22 0 3 1185 729 116 0 0 chr12 78716337 78716449 -42541081 - B1_Mur4 SINE Alu -13 137 26 3 1185 298 324 119 7 chr12 78716599 78716742 -42540788 - MER34 LTR ERV1 -412 159 1 3 1185 645 253 8 85 chr12 78716747 78716993 -42540537 - LTR37A LTR ERV1 -178 248 22 3 1185 23 0 0 0 chr12 78717267 78717290 -42540240 + AT_rich Low_complexity Low_complexity 1 23 0 3 1185 245 152 0 33 chr12 78717718 78717779 -42539751 + T-rich Low_complexity Low_complexity 6 64 0 3 1185 849 308 46 23 chr12 78718293 78718342 -42539188 + L1MB4 LINE L1 5627 5675 -505 3 1185 1371 91 11 0 chr12 78718342 78718528 -42539002 + B2_Mm1t SINE B2 1 188 -5 3 1185 849 308 46 23 chr12 78718528 78718867 -42538663 + L1MB4 LINE L1 5676 6023 -157 3 1185 1291 179 9 5 chr12 78719020 78719244 -42538286 - URR1B DNA MER1_type 0 225 1 3 1185 294 148 19 0 chr12 78719359 78719413 -42538117 - ORR1D2 LTR MaLR -2 368 314 3 1185 505 274 3 212 chr12 78720155 78720438 -42537092 + MER58A DNA MER1_type 1 224 0 3 1185 426 284 45 20 chr12 78720777 78720940 -42536590 + L1ME5 LINE L1 5830 5996 -198 3 1185 923 239 158 3 chr12 78720940 78721238 -42536292 + MER2 DNA MER2_type 2 345 0 3 1185 426 284 45 20 chr12 78721238 78721272 -42536258 + L1ME5 LINE L1 5997 6032 -162 3 1185 333 0 0 0 chr12 78721274 78721311 -42536219 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1185 282 254 0 0 chr12 78721379 78721438 -42536092 + L1ME5 LINE L1 6119 6177 -17 3 1185 701 125 0 8 chr12 78721466 78721587 -42535943 + (GGGA)n Simple_repeat Simple_repeat 3 122 0 3 1185 413 36 18 0 chr12 78721719 78721774 -42535756 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1185 269 265 0 19 chr12 78721776 78721880 -42535650 + (CAGAGA)n Simple_repeat Simple_repeat 2 103 0 3 1185 306 50 0 0 chr12 78721882 78721922 -42535608 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1185 315 0 0 0 chr12 78721922 78721956 -42535574 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1185 1897 291 4 14 chr12 78722889 78723401 -42534129 + Lx7 LINE L1 6787 7293 -403 3 1185 234 139 0 0 chr12 78723403 78723439 -42534091 - MTC LTR MaLR 0 421 386 3 1185 974 191 23 0 chr12 78723861 78724034 -42533496 - MTC LTR MaLR -28 379 203 3 1185 27 0 0 0 chr12 78724428 78724455 -42533075 + AT_rich Low_complexity Low_complexity 1 27 0 3 1185 1391 144 4 92 chr12 78726027 78726161 -42531369 - MTC LTR MaLR -181 240 121 3 1185 1129 68 7 7 chr12 78726161 78726308 -42531222 + B1_Mus2 SINE Alu 1 147 0 3 1185 1391 144 4 92 chr12 78726308 78726433 -42531097 - MTC LTR MaLR -301 120 4 3 1185 207 200 13 67 chr12 78726511 78726586 -42530944 + T-rich Low_complexity Low_complexity 5 75 0 3 1185 577 374 58 24 chr12 78727145 78727559 -42529971 - L1ME4a LINE L1 -247 5877 5450 3 1185 207 100 0 0 chr12 78727728 78727758 -42529772 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1185 653 114 9 0 chr12 78728199 78728304 -42529226 + (TTCC)n Simple_repeat Simple_repeat 2 107 0 3 1185 288 267 0 0 chr12 78728304 78728364 -42529166 + polypyrimidine Low_complexity Low_complexity 1 60 0 3 1185 891 126 6 36 chr12 78728364 78728714 -42528816 + CT-rich Low_complexity Low_complexity 1 339 0 3 1185 1035 152 0 0 chr12 78728727 78728905 -42528625 + CT-rich Low_complexity Low_complexity 3 180 0 3 1185 860 111 7 0 chr12 78728908 78729043 -42528487 + (TTCC)n Simple_repeat Simple_repeat 2 137 0 3 1185 470 291 8 45 chr12 78729043 78729176 -42528354 - ID_B1 SINE B4 -13 211 84 3 1185 495 275 124 13 chr12 78729751 78729976 -42527554 + LTR50 LTR ERVL 5 254 -541 3 1185 651 256 223 14 chr12 78730413 78730691 -42526839 - MLT1A1 LTR MaLR -46 362 27 3 1185 451 306 97 11 chr12 78730823 78731008 -42526522 + MIRb SINE MIR 16 216 -52 3 1185 1177 134 43 111 chr12 78731023 78731258 -42526272 - URR1B DNA MER1_type -1 224 6 3 1185 376 305 117 97 chr12 78731347 78731707 -42525823 + MTEb LTR MaLR 1 367 -12 3 1185 434 49 16 0 chr12 78732821 78732882 -42524648 + (TATG)n Simple_repeat Simple_repeat 3 64 0 3 1185 480 330 89 47 chr12 78734357 78734570 -42522960 + B4A SINE B4 2 223 -69 3 1185 342 0 0 0 chr12 78735724 78735762 -42521768 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1185 408 321 9 0 chr12 78735781 78735893 -42521637 - B1F SINE Alu -36 113 1 3 1185 1178 186 238 40 chr12 78736081 78736502 -42521028 + RMER20A LTR ERVK 13 516 0 3 1185 271 306 94 97 chr12 78737039 78737305 -42520225 + ORR1E LTR MaLR 66 323 -47 3 1185 581 14 27 0 chr12 78737306 78737379 -42520151 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 3 1185 264 312 25 0 chr12 78738154 78738234 -42519296 + MER117 DNA MER1_type 83 164 -33 3 1185 215 340 30 77 chr12 78739552 78739721 -42517809 + MIRc SINE MIR 26 186 -82 3 1185 1244 251 97 17 chr12 78740061 78740475 -42517055 + Charlie4a DNA MER1_type 14 460 -48 3 1185 375 242 227 41 chr12 78740524 78740696 -42516834 + MIRc SINE MIR 46 249 -19 3 1185 702 284 98 20 chr12 78741235 78741479 -42516051 - B4 SINE B4 -29 263 1 3 1185 284 240 84 76 chr12 78741782 78741913 -42515617 - MER3 DNA MER1_type -41 168 37 3 1185 781 214 29 48 chr12 78741955 78742161 -42515369 + RMER30 DNA MER1_type 1 202 0 3 1185 1573 262 43 62 chr12 78742251 78742784 -42514746 - MT2A LTR ERVL -10 523 1 3 1185 600 91 0 0 chr12 78742992 78743080 -42514450 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 1185 237 33 0 0 chr12 78744186 78744216 -42513314 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1185 858 140 81 0 chr12 78744223 78744359 -42513171 - B1_Mur3 SINE Alu 0 149 3 3 1185 225 0 0 0 chr12 78744367 78744392 -42513138 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 3 1185 554 241 150 70 chr12 78744392 78744579 -42512951 - B3 SINE B2 -14 202 1 3 1185 443 96 27 0 chr12 78744593 78744666 -42512864 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 3 1185 3306 60 0 0 chr12 78745370 78745768 -42511762 + MTB LTR MaLR 3 400 0 3 1185 499 296 0 11 chr12 78746086 78746181 -42511349 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 1185 333 0 0 0 chr12 78746181 78746218 -42511312 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1185 499 296 0 11 chr12 78746218 78746303 -42511227 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 1185 298 289 115 51 chr12 78747372 78747529 -42510001 + Charlie4z DNA MER1_type 1 167 0 4 1185 279 312 82 20 chr12 78747858 78748005 -42509525 - MIR SINE MIR -8 254 99 4 1185 762 241 172 35 chr12 78748860 78749203 -42508327 + MLT1B LTR MaLR 1 390 0 4 1185 1742 116 29 25 chr12 78749330 78749605 -42507925 - Lx4A LINE L1 -8 7050 6775 4 1185 1363 159 32 18 chr12 78749612 78749932 -42507598 + Lx4B LINE L1 6118 6510 -548 4 1185 225 196 0 0 chr12 78750199 78750245 -42507285 + A-rich Low_complexity Low_complexity 1 46 0 4 1185 273 246 15 0 chr12 78751010 78751075 -42506455 + B1F SINE Alu 82 147 -2 4 1185 4028 159 51 10 chr12 78751165 78751849 -42505681 - MERVL_2A-int LTR ERVL -607 5154 4443 4 1185 210 37 0 0 chr12 78751899 78751926 -42505604 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1185 1226 182 82 96 chr12 78751928 78752220 -42505310 - MT2A LTR ERVL -61 540 109 4 1185 243 0 0 0 chr12 78752220 78752247 -42505283 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1185 1226 159 110 117 chr12 78752247 78752364 -42505166 - MT2A LTR ERVL -425 108 6 4 1185 578 338 78 41 chr12 78752600 78752945 -42504585 + L1ME4a LINE L1 5579 5936 -188 4 1185 278 299 101 16 chr12 78753030 78753159 -42504371 + ORR1E LTR MaLR 4 143 -216 4 1185 516 273 45 12 chr12 78753501 78753711 -42503819 + L1MB8 LINE L1 5634 5851 -327 4 1185 822 296 102 32 chr12 78753713 78754161 -42503369 + MER74A LTR ERVL 66 622 0 4 1185 286 22 0 61 chr12 78754659 78754708 -42502822 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1185 766 76 55 10 chr12 78754717 78754919 -42502611 + (TG)n Simple_repeat Simple_repeat 1 211 0 4 1185 847 289 60 11 chr12 78755008 78755274 -42502256 - B4A SINE B4 -10 282 4 4 1185 3282 37 25 2 chr12 78757066 78757468 -42500062 + RLTR10A LTR ERVK 1 411 0 4 1185 234 321 12 0 chr12 78757823 78757904 -42499626 - ID4 SINE ID 0 83 2 4 1185 663 238 152 0 chr12 78759226 78759449 -42498081 - L1MC3 LINE L1 -162 7623 7367 4 1185 657 157 0 0 chr12 78759549 78759664 -42497866 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1185 317 311 0 22 chr12 78759955 78760047 -42497483 + MIR SINE MIR 34 123 -85 4 1185 317 284 132 15 chr12 78761163 78761299 -42496231 + MLT1J LTR MaLR 226 377 -135 4 1185 744 152 0 0 chr12 78762281 78762413 -42495117 + CT-rich Low_complexity Low_complexity 2 133 0 4 1185 940 270 9 43 chr12 78762415 78762647 -42494883 - B4 SINE B4 -68 224 1 4 1185 565 119 10 10 chr12 78762665 78762767 -42494763 + (TCC)n Simple_repeat Simple_repeat 3 104 0 4 1185 327 297 45 92 chr12 78762827 78762986 -42494544 - MIR SINE MIR -91 171 24 4 1185 264 30 0 0 chr12 78763494 78763527 -42494003 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1185 345 75 0 0 chr12 78763528 78763581 -42493949 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 4 1185 993 170 0 3 chr12 78763608 78763967 -42493563 + (CA)n Simple_repeat Simple_repeat 1 357 0 4 1185 309 115 0 55 chr12 78763968 78764023 -42493507 + HAL1-3A_ME LINE L1 1976 2027 -831 4 1185 576 160 0 0 chr12 78764023 78764142 -42493388 + (CA)n Simple_repeat Simple_repeat 1 119 0 4 1185 312 323 44 108 chr12 78764911 78765206 -42492324 - L2c LINE L2 -177 3210 2935 4 1185 601 303 93 109 chr12 78765241 78765626 -42491904 - MTEa LTR MaLR 0 379 1 4 1185 772 312 58 18 chr12 78766031 78766305 -42491225 + B4A SINE B4 8 292 0 4 1185 255 31 0 0 chr12 78766345 78766377 -42491153 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 4 1185 225 296 37 84 chr12 78766558 78766665 -42490865 - MLT1A0 LTR MaLR -260 105 4 4 1185 208 241 0 121 chr12 78767707 78767773 -42489757 - MIR SINE MIR -86 122 65 4 1185 2398 176 100 49 chr12 78767786 78768294 -42489236 - RMER5 LTR ERV1 0 534 1 4 1185 785 271 114 27 chr12 78768327 78768589 -42488941 - B4A SINE B4 -7 285 1 4 1185 387 0 0 0 chr12 78769449 78769492 -42488038 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1185 270 0 0 0 chr12 78769492 78769521 -42488009 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1185 454 274 0 41 chr12 78770033 78770155 -42487375 - PB1D10 SINE Alu 0 117 1 4 1185 230 269 9 63 chr12 78770545 78770656 -42486874 - L1ME3A LINE L1 -50 6123 6019 4 1185 560 278 122 5 chr12 78770716 78770929 -42486601 - L1ME3A LINE L1 -257 5916 5679 4 1185 383 0 21 0 chr12 78770977 78771024 -42486506 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1185 231 336 18 0 chr12 78771171 78771284 -42486246 - L1ME3A LINE L1 -747 5399 5285 4 1185 651 247 90 94 chr12 78771818 78772019 -42485511 + MTEb LTR MaLR 168 367 -12 4 1185 759 127 0 0 chr12 78773424 78773534 -42483996 + B1_Mur3 SINE Alu 33 142 -7 4 1185 243 0 0 0 chr12 78773534 78773561 -42483969 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 4 1185 971 192 142 19 chr12 78773626 78773886 -42483644 - B4A SINE B4 0 292 1 4 1185 328 294 74 56 chr12 78774016 78774178 -42483352 - ORR1E LTR MaLR -169 190 26 4 1186 205 393 29 29 chr12 78774329 78774502 -42483028 + L2 LINE L2 2699 2871 -548 4 1186 419 221 164 0 chr12 78774507 78774629 -42482901 - L1MA5 LINE L1 -5 6295 6154 4 1186 303 28 0 0 chr12 78774925 78774961 -42482569 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1186 317 378 17 0 chr12 78774992 78775111 -42482419 + MER115 DNA Tip100 1 121 -572 4 1186 532 269 67 50 chr12 78775127 78775307 -42482223 + MER53 DNA hAT 5 187 -6 4 1186 471 290 82 14 chr12 78775367 78775514 -42482016 + MER58A DNA MER1_type 46 202 -22 4 1186 257 307 114 57 chr12 78775706 78775882 -42481648 + MER115 DNA Tip100 496 681 -12 4 1186 195 221 35 0 chr12 78777748 78777834 -42479696 + CT-rich Low_complexity Low_complexity 2 90 0 4 1186 374 305 9 0 chr12 78778736 78778841 -42478689 - MER81 DNA AcHobo -7 107 2 4 1186 1450 214 70 42 chr12 78779932 78780289 -42477241 - ORR1D2 LTR MaLR -3 367 1 4 1186 486 0 0 0 chr12 78780650 78780704 -42476826 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1186 2080 152 63 22 chr12 78780769 78781132 -42476398 - ORR1C1 LTR MaLR 0 378 1 4 1186 457 213 11 0 chr12 78781500 78781594 -42475936 + MLT1C LTR MaLR 59 153 -314 4 1186 2446 175 49 20 chr12 78782932 78783423 -42474107 - RLTR16 LTR ERVK 0 505 1 4 1186 455 286 172 17 chr12 78783606 78783844 -42473686 - RMER15 LTR ERVL -17 558 284 4 1186 280 241 68 41 chr12 78785533 78785680 -42471850 + L1M2 LINE L1 3188 3338 -2805 4 1186 1927 114 9 62 chr12 78785714 78786050 -42471480 - ORR1A3 LTR MaLR -8 318 1 4 1186 499 277 97 0 chr12 78786475 78786630 -42470900 + RMER1B Other Other 215 384 -682 4 1186 715 231 79 90 chr12 78786704 78786963 -42470567 + RMER1C Other Other 1063 1319 -23 4 1186 369 58 0 0 chr12 78786963 78787015 -42470515 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 4 1186 577 305 57 45 chr12 78787114 78787358 -42470172 - B4A SINE B4 -44 248 2 4 1186 286 288 0 36 chr12 78787375 78787458 -42470072 - 4.5SRNA scRNA scRNA -14 80 1 4 1186 1502 162 187 15 chr12 78787474 78787800 -42469730 - ORR1C2 LTR MaLR -2 382 1 4 1186 1122 23 0 0 chr12 78788435 78788568 -42468962 + (CA)n Simple_repeat Simple_repeat 1 133 0 4 1186 213 254 149 0 chr12 78788813 78788880 -42468650 - PB1 SINE Alu -14 113 37 4 1186 212 259 74 0 chr12 78789229 78789283 -42468247 - L2b LINE L2 -4 3371 3314 4 1186 221 75 0 24 chr12 78789899 78789940 -42467590 + (TTTTTA)n Simple_repeat Simple_repeat 2 41 0 4 1186 342 263 43 90 chr12 78790466 78790533 -42466997 - RLTR42-int LTR ERVK -4124 1398 1342 4 1186 1176 164 86 9 chr12 78790533 78790743 -42466787 - URR1A DNA MER1_type 0 226 1 4 1186 342 263 43 90 chr12 78790743 78790863 -42466667 - RLTR42-int LTR ERVK -4181 1341 1220 4 1186 224 314 35 2 chr12 78791041 78791142 -42466388 + L2a LINE L2 3240 3370 -56 4 1186 207 0 0 0 chr12 78791686 78791709 -42465821 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 4 1186 329 350 89 48 chr12 78791749 78792019 -42465511 - B4 SINE B4 -11 281 1 4 1186 214 338 49 21 chr12 78792191 78792333 -42465197 - MIR SINE MIR -82 180 35 4 1186 333 267 29 35 chr12 78792967 78793138 -42464392 + L1MC5 LINE L1 7330 7499 -462 4 1186 368 292 56 70 chr12 78793212 78793499 -42464031 + L1MC5 LINE L1 7621 7903 -58 4 1186 646 143 80 29 chr12 78793500 78793637 -42463893 - RMER1C Other Other -1 1341 1198 4 1186 200 167 0 0 chr12 78793638 78793668 -42463862 + polypurine Low_complexity Low_complexity 2 31 0 4 1186 657 187 0 31 chr12 78793668 78793795 -42463735 - RMER1C Other Other -128 1214 1092 4 1186 540 200 6 162 chr12 78796617 78796784 -42460746 - B1_Mur1 SINE Alu -8 141 1 4 1186 877 261 9 1 chr12 78796792 78796998 -42460532 - B3A SINE B2 -5 211 1 4 1186 277 311 38 20 chr12 78797901 78798073 -42459457 + MLT1A LTR MaLR 1 172 -236 4 1186 348 291 82 87 chr12 78798048 78798255 -42459275 + ORR1E LTR MaLR 89 294 -65 4 1186 362 21 21 0 chr12 78798280 78798327 -42459203 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1186 1104 89 50 16 chr12 78800233 78800415 -42457115 + B2_Mm2 SINE B2 8 195 0 4 1186 285 98 0 0 chr12 78800431 78800472 -42457058 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 4 1186 518 54 14 0 chr12 78802047 78802121 -42455409 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1186 451 298 96 36 chr12 78802186 78802489 -42455041 + Kanga2_a DNA Tc2 532 852 -36 4 1186 335 280 95 8 chr12 78802696 78802822 -42454708 + RMER15 LTR ERVL 425 561 -14 4 1186 378 246 136 0 chr12 78803141 78803259 -42454271 + MIR SINE MIR 3 136 -126 4 1186 580 231 56 25 chr12 78804067 78804167 -42453363 - RLTR20C LTR ERVK 0 551 455 4 1186 387 0 0 0 chr12 78804167 78804210 -42453320 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1186 1008 198 315 57 chr12 78804210 78804566 -42452964 - RLTR20C LTR ERVK -97 454 1 4 1186 244 259 0 0 chr12 78805854 78805908 -42451622 - Charlie20a DNA Charlie -68 739 686 5 1186 519 293 50 60 chr12 78806243 78806443 -42451087 + B3A SINE B2 1 198 0 5 1186 269 191 44 0 chr12 78806460 78806528 -42451002 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 5 1186 405 102 0 0 chr12 78806528 78806587 -42450943 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1186 288 132 12 12 chr12 78806756 78806822 -42450708 - ORR1B1 LTR MaLR 0 394 313 5 1186 212 254 0 0 chr12 78807589 78807644 -42449886 + MIRb SINE MIR 176 230 -38 5 1186 540 0 0 0 chr12 78807766 78807826 -42449704 + (TTTTG)n Simple_repeat Simple_repeat 3 62 0 5 1186 400 297 25 49 chr12 78808412 78808575 -42448955 - RLTR14 LTR ERV1 0 382 224 5 1186 230 288 88 0 chr12 78809729 78809809 -42447721 + MLT1I LTR MaLR 319 405 -6 5 1186 201 74 0 0 chr12 78809901 78809928 -42447602 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1186 208 49 0 68 chr12 78810104 78810148 -42447382 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1186 1178 34 7 20 chr12 78810221 78810370 -42447160 + B1_Mus1 SINE Alu 2 148 0 5 1186 222 136 0 0 chr12 78810371 78810415 -42447115 + (A)n Simple_repeat Simple_repeat 1 44 0 5 1186 521 15 15 0 chr12 78810542 78810608 -42446922 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 5 1186 2128 148 19 32 chr12 78810960 78811331 -42446199 - ORR1B2 LTR MaLR -1 366 1 5 1186 3328 64 75 2 chr12 78811432 78811915 -42445615 - LTRIS2 LTR ERV1 -42 522 5 5 1186 421 205 0 12 chr12 78812086 78812170 -42445360 + RSINE1 SINE B4 47 129 -36 5 1186 342 0 0 0 chr12 78812172 78812210 -42445320 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1186 290 335 70 65 chr12 78812351 78812552 -42444978 - LTR52 LTR ERVL -216 205 4 5 1186 348 77 0 0 chr12 78813224 78813276 -42444254 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1186 660 195 15 15 chr12 78815315 78815445 -42442085 - B1_Mur2 SINE Alu -15 134 5 5 1186 319 328 14 36 chr12 78815479 78815618 -42441912 - MTEa LTR MaLR -226 153 18 5 1186 1134 178 184 15 chr12 78815620 78815963 -42441567 - RMER17C LTR ERVK -9 401 1 5 1186 290 346 91 13 chr12 78816472 78816758 -42440772 + MLT1A0 LTR MaLR 49 372 -2 5 1186 245 365 64 12 chr12 78816781 78816953 -42440577 - Tigger15a DNA TcMar -194 521 341 5 1186 564 208 17 0 chr12 78817015 78817135 -42440395 + MER5A1 DNA MER1_type 42 163 -3 5 1186 446 247 34 45 chr12 78817138 78817316 -42440214 - MER5B DNA MER1_type 0 178 3 5 1186 203 308 38 25 chr12 78817853 78817933 -42439597 - MIRb SINE MIR -65 203 123 5 1186 1270 264 43 65 chr12 78818711 78819157 -42438373 - RLTR31_Mm LTR ERVK 0 561 126 5 1186 688 178 0 119 chr12 78819163 78819348 -42438182 + RLTR31_Mm LTR ERVK 397 559 -2 5 1186 8007 63 15 14 chr12 78819355 78820377 -42437153 - RLTR13D5 LTR ERVK 0 1023 1 5 1186 2750 178 31 18 chr12 78820387 78820941 -42436589 - RLTR31_Mm LTR ERVK 0 561 1 5 1186 595 231 231 0 chr12 78822139 78822312 -42435218 - B3 SINE B2 -1 215 3 5 1186 338 177 12 48 chr12 78822967 78823050 -42434480 + ORR1D1 LTR MaLR 1 80 -294 5 1186 1825 149 12 12 chr12 78824684 78825009 -42432521 - ORR1B2 LTR MaLR 0 367 43 5 1186 348 132 28 44 chr12 78825135 78825238 -42432292 - ORR1B2 LTR MaLR -9 358 226 5 1186 339 275 79 56 chr12 78825288 78825504 -42432026 - L1M5 LINE L1 -755 5485 5265 5 1186 695 317 123 30 chr12 78825593 78826195 -42431335 - L1M5 LINE L1 -1006 5140 4483 5 1186 306 261 22 11 chr12 78826613 78826702 -42430828 + L2a LINE L2 2778 2867 -552 5 1186 211 300 0 0 chr12 78827335 78827395 -42430135 + L2a LINE L2 3025 3084 -342 5 1186 505 217 122 4 chr12 78827608 78827830 -42429700 - MTD LTR MaLR -37 382 81 5 1186 184 336 45 77 chr12 78827947 78828102 -42429428 + L4 LINE RTE 1726 1875 -154 5 1186 741 158 65 0 chr12 78829839 78829978 -42427552 + B1_Mus1 SINE Alu 1 148 0 5 1186 323 281 66 36 chr12 78830479 78830679 -42426851 + L1MA4A LINE L1 5788 6025 -278 5 1186 939 216 58 5 chr12 78831291 78831496 -42426034 - B3 SINE B2 0 216 1 5 1186 351 301 74 14 chr12 78831519 78831667 -42425863 + MER5A1 DNA MER1_type 1 157 -9 5 1186 694 301 133 24 chr12 78831718 78832140 -42425390 - Charlie7 DNA MER1_type -1238 1374 907 5 1186 631 289 29 24 chr12 78832419 78832625 -42424905 - B4A SINE B4 0 292 86 5 1186 351 0 0 0 chr12 78833556 78833595 -42423935 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1186 538 115 0 11 chr12 78833742 78833830 -42423700 + RMER1A Other Other 938 1024 -6 5 1186 270 306 0 68 chr12 78833890 78834023 -42423507 + MLT1H2 LTR MaLR 82 205 -284 5 1186 416 67 17 0 chr12 78834710 78834770 -42422760 + (CCA)n Simple_repeat Simple_repeat 2 62 0 5 1186 24 0 0 0 chr12 78834969 78834993 -42422537 + GC_rich Low_complexity Low_complexity 1 24 0 5 1186 271 225 0 63 chr12 78835185 78835280 -42422250 + CT-rich Low_complexity Low_complexity 28 116 0 5 1186 1890 205 24 38 chr12 78835849 78836255 -42421275 - MTD LTR MaLR 0 419 18 5 1186 189 0 0 0 chr12 78836255 78836276 -42421254 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1186 1890 205 24 38 chr12 78836276 78836294 -42421236 - MTD LTR MaLR -402 17 1 5 1186 342 0 0 0 chr12 78836478 78836516 -42421014 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 1186 519 17 0 0 chr12 78837544 78837604 -42419926 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1186 542 251 135 31 chr12 78837839 78838032 -42419498 - B3 SINE B2 0 216 4 5 1186 564 56 0 0 chr12 78839394 78839466 -42418064 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1186 476 279 80 56 chr12 78839529 78839954 -42417576 + L1MEg LINE L1 1237 1641 -4525 5 1186 3188 73 2 0 chr12 78840821 78841220 -42416310 + MTB LTR MaLR 1 400 0 5 1186 206 359 32 11 chr12 78841387 78841480 -42416050 - MIR SINE MIR -69 193 99 5 1186 284 248 38 47 chr12 78841645 78841751 -42415779 - MIRb SINE MIR -79 189 85 5 1186 202 254 15 31 chr12 78841784 78841849 -42415681 + CT-rich Low_complexity Low_complexity 2 65 0 5 1186 315 304 29 19 chr12 78843665 78843769 -42413761 + LTR33 LTR ERVL 79 183 -332 5 1186 21 36 0 0 chr12 78844110 78844138 -42413392 + AT_rich Low_complexity Low_complexity 1 28 0 5 1186 2549 181 27 25 chr12 78844225 78844752 -42412778 - RLTR11A LTR ERVK 0 528 1 5 1186 450 0 0 0 chr12 78845241 78845291 -42412239 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1186 353 52 0 33 chr12 78845358 78845418 -42412112 + PB1D9 SINE Alu 2 59 -61 5 1186 252 162 61 87 chr12 78845456 78845571 -42411959 + RLTR25B LTR ERVK 397 508 -520 5 1186 789 35 0 1 chr12 78845500 78845606 -42411924 + B1_Mus2 SINE Alu 42 142 -5 5 1186 684 208 15 0 chr12 78846512 78846642 -42410888 + B3A SINE B2 2 133 -65 5 1186 378 0 0 0 chr12 78846958 78847000 -42410530 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1186 21 36 0 0 chr12 78847039 78847067 -42410463 + AT_rich Low_complexity Low_complexity 1 28 0 5 1186 191 32 65 0 chr12 78847229 78847260 -42410270 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 5 1186 376 275 69 0 chr12 78848716 78848847 -42408683 - MER117 DNA MER1_type -42 155 16 5 1186 1908 169 8 74 chr12 78849231 78849609 -42407921 - ORR1B1 LTR MaLR 0 394 42 5 1186 353 111 0 0 chr12 78849617 78849671 -42407859 - ORR1B1-int LTR MaLR 0 1963 1910 5 1186 320 283 95 53 chr12 78849878 78850068 -42407462 - MIRb SINE MIR -57 211 14 5 1186 285 128 0 0 chr12 78850470 78850517 -42407013 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1186 3235 29 0 10 chr12 78851034 78851419 -42406111 - L1Md_F3 LINE L1 0 6584 6204 5 1186 279 0 0 0 chr12 78851522 78851553 -42405977 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1186 452 250 0 0 chr12 78852767 78852859 -42404671 + ID_B1 SINE B4 80 171 -53 5 1186 675 154 0 0 chr12 78852866 78852983 -42404547 + GA-rich Low_complexity Low_complexity 2 118 0 5 1186 1224 101 0 0 chr12 78852983 78853161 -42404369 + (GAA)n Simple_repeat Simple_repeat 1 178 0 5 1186 452 271 90 64 chr12 78853846 78854079 -42403451 - MLT1D LTR MaLR -1 504 266 5 1186 243 372 68 25 chr12 78854403 78854640 -42402890 - L2 LINE L2 -679 2740 2494 5 1186 1223 176 4 22 chr12 78854697 78854923 -42402607 + URR1B DNA MER1_type 1 222 -3 5 1186 424 258 0 61 chr12 78855155 78855254 -42402276 + PB1D10 SINE Alu 9 101 -16 5 1186 1268 211 132 21 chr12 78855256 78855590 -42401940 + MTEa LTR MaLR 3 373 -6 5 1186 569 269 228 80 chr12 78855613 78856360 -42401170 - L2 LINE L2 -1122 2297 1441 5 1186 180 132 0 50 chr12 78856794 78856834 -42400696 + L3 LINE CR1 1159 1196 -3293 5 1186 243 286 39 13 chr12 78859741 78859819 -42397711 + (CATG)n Simple_repeat Simple_repeat 2 81 0 5 1186 417 39 0 0 chr12 78860448 78860499 -42397031 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 1186 402 200 193 37 chr12 78860515 78860650 -42396880 - B3 SINE B2 -60 156 1 5 1186 249 361 70 30 chr12 78861104 78861304 -42396226 - MLT1J LTR MaLR 0 512 305 5 1186 406 320 60 79 chr12 78861987 78862252 -42395278 + MLT1H LTR MaLR 100 359 -190 5 1186 209 220 40 0 chr12 78862517 78862567 -42394963 - L2 LINE L2 -971 2448 2397 5 1186 352 294 84 40 chr12 78864036 78864238 -42393292 - RMER15 LTR ERVL -18 557 347 5 1186 484 280 32 82 chr12 78864856 78865076 -42392454 + B3A SINE B2 11 216 0 5 1186 260 234 31 0 chr12 78866169 78866233 -42391297 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1186 644 253 118 66 chr12 78866243 78866514 -42391016 - B4A SINE B4 0 292 8 5 1186 560 125 10 0 chr12 78866883 78866979 -42390551 + (GGA)n Simple_repeat Simple_repeat 3 99 0 5 1186 358 350 6 65 chr12 78867508 78867676 -42389854 - MLT2B2 LTR ERVL -200 315 158 6 1186 273 339 54 22 chr12 78868023 78868207 -42389323 - Tigger9a DNA Tigger -385 347 158 6 1186 551 341 0 6 chr12 78868233 78868413 -42389117 - Tigger9b DNA MER2_type -445 179 1 6 1186 249 194 209 0 chr12 78868554 78868621 -42388909 + L1MC5 LINE L1 6753 6833 -1128 6 1186 426 277 77 0 chr12 78869262 78869392 -42388138 + B1F1 SINE Alu 2 141 -8 6 1186 309 216 27 13 chr12 78869412 78869487 -42388043 + ID4_ SINE ID 8 83 0 6 1186 585 283 141 68 chr12 78869496 78869894 -42387636 + L1MC5 LINE L1 6929 7355 -606 6 1186 38713 31 0 0 chr12 78869932 78876564 -42380966 - L1Md_T LINE L1 0 6585 1 6 1186 276 100 0 0 chr12 78876614 78876654 -42380876 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1186 966 258 26 33 chr12 78876660 78876933 -42380597 - B4 SINE B4 0 292 22 6 1186 1894 161 156 3 chr12 78877604 78877977 -42379553 - RLTR23 LTR ERV1 0 430 1 6 1186 1196 170 10 0 chr12 78879938 78880144 -42377386 + URR1B DNA MER1_type 18 225 0 6 1186 373 287 86 9 chr12 78880501 78880617 -42376913 + PB1 SINE Alu 1 125 -2 6 1186 220 164 229 0 chr12 78880632 78880693 -42376837 + ID4_ SINE ID 9 83 0 6 1186 270 329 111 12 chr12 78881515 78881687 -42375843 - LTR33 LTR ERVL 0 515 327 6 1186 332 292 128 30 chr12 78882776 78883085 -42374445 + L1M5 LINE L1 5083 5421 -819 6 1186 1590 32 0 11 chr12 78883390 78883580 -42373950 - B2_Mm1a SINE B2 -4 189 2 6 1186 197 338 0 24 chr12 78884253 78884335 -42373195 - MIRb SINE MIR -112 156 77 6 1186 723 223 11 4 chr12 78885817 78886290 -42371240 + (CATATA)n Simple_repeat Simple_repeat 1 476 0 6 1186 252 109 43 0 chr12 78886292 78886338 -42371192 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1186 189 0 0 0 chr12 78887514 78887535 -42369995 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 6 1186 592 261 76 0 chr12 78887547 78887704 -42369826 - RMER1C Other Other -18 1324 1156 6 1186 487 252 67 0 chr12 78887791 78887910 -42369620 - RMER1B Other Other -681 385 259 6 1186 1153 215 112 46 chr12 78887913 78888437 -42369093 + RMER17B LTR ERVK 381 953 -5 6 1186 406 291 45 38 chr12 78888561 78888718 -42368812 + MER3 DNA MER1_type 52 209 0 6 1186 24 0 0 0 chr12 78888825 78888849 -42368681 + AT_rich Low_complexity Low_complexity 1 24 0 6 1186 348 295 35 21 chr12 78889244 78889386 -42368144 - ORR1E LTR MaLR -210 149 6 6 1186 227 268 18 0 chr12 78889594 78889650 -42367880 + MLT1D LTR MaLR 111 167 -460 6 1186 419 325 76 76 chr12 78889652 78890048 -42367482 + MLT1A1 LTR MaLR 1 396 -12 6 1186 411 92 0 0 chr12 78890201 78890266 -42367264 + (A)n Simple_repeat Simple_repeat 1 65 0 6 1186 264 327 39 0 chr12 78890281 78890385 -42367145 + MLT1D LTR MaLR 335 442 -63 6 1186 242 191 0 0 chr12 78891778 78891825 -42365705 + L2a LINE L2 3340 3386 -40 6 1186 22 0 0 0 chr12 78892291 78892313 -42365217 + AT_rich Low_complexity Low_complexity 1 22 0 6 1186 1205 261 100 28 chr12 78892363 78892835 -42364695 - L1MB5 LINE L1 -84 6090 5585 6 1186 681 126 35 118 chr12 78893447 78893591 -42363939 + B1_Mur3 SINE Alu 11 142 -7 6 1186 285 253 173 60 chr12 78894139 78894307 -42363223 + Cheshire DNA MER1_type 1 187 -2233 6 1186 303 301 14 7 chr12 78894296 78894443 -42363087 + Cheshire DNA MER1_type 2272 2419 -1 6 1186 384 282 145 92 chr12 78894984 78895191 -42362339 - MER20 DNA MER1_type 0 219 2 6 1186 205 246 0 32 chr12 78895653 78895716 -42361814 + CT-rich Low_complexity Low_complexity 4 64 0 6 1186 333 0 0 0 chr12 78895803 78895840 -42361690 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1186 298 287 184 11 chr12 78895984 78896174 -42361356 - MLT1J LTR MaLR -190 322 100 6 1186 417 358 17 11 chr12 78896281 78896456 -42361074 + (GGGTG)n Simple_repeat Simple_repeat 3 178 0 6 1186 991 69 0 20 chr12 78897474 78897621 -42359909 + (GAAA)n Simple_repeat Simple_repeat 2 145 0 6 1186 1141 206 30 0 chr12 78898059 78898292 -42359238 + L1MC3 LINE L1 6452 6691 -1094 6 1186 383 95 0 16 chr12 78898353 78898372 -42359158 + (TC)n Simple_repeat Simple_repeat 1 18 0 6 1186 1044 114 0 0 chr12 78898372 78898530 -42359000 + (TTCC)n Simple_repeat Simple_repeat 4 161 0 6 1186 383 95 0 16 chr12 78898530 78898574 -42358956 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1186 515 305 27 60 chr12 78898626 78898811 -42358719 - B3A SINE B2 -16 182 4 6 1186 324 229 137 51 chr12 78898848 78899052 -42358478 + L1M5 LINE L1 5617 5837 -327 6 1186 387 169 247 0 chr12 78899073 78899162 -42358368 + L1MC3 LINE L1 6739 6849 -936 6 1186 279 231 0 0 chr12 78899642 78899694 -42357836 + Lx8 LINE L1 6942 6993 -480 6 1186 1148 276 104 25 chr12 78899902 78900510 -42357020 + L1MC3 LINE L1 6858 7513 -272 6 1186 829 279 18 13 chr12 78901070 78901299 -42356231 - B4A SINE B4 -62 230 1 6 1186 1094 76 14 7 chr12 78901406 78901552 -42355978 + B1_Mus1 SINE Alu 1 147 -1 6 1186 204 40 0 0 chr12 78901578 78901603 -42355927 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1186 273 265 101 10 chr12 78901743 78901842 -42355688 - B1F1 SINE Alu -39 110 3 6 1186 2295 183 11 40 chr12 78902282 78902738 -42354792 - Lx5 LINE L1 -2 7048 6606 6 1186 1297 106 6 0 chr12 78902738 78902918 -42354612 - L1_Mur2 LINE L1 -174 5703 5523 6 1186 2929 28 2 169 chr12 78902918 78903384 -42354146 + RLTR10 LTR ERVK 1 388 -2 6 1186 2842 34 75 0 chr12 78903386 78903735 -42353795 + RLTR10-int LTR ERVK 1 375 -1612 6 1186 8520 14 0 1 chr12 78903733 78904670 -42352860 + RLTR10-int LTR ERVK 1049 1984 -3 6 1186 2916 31 2 169 chr12 78904672 78905138 -42352392 + RLTR10 LTR ERVK 1 388 -2 6 1186 8703 156 65 17 chr12 78905142 78905223 -42352307 - L1_Mur2 LINE L1 -353 5527 5444 6 1186 353 20 41 0 chr12 78905223 78905272 -42352258 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 148 8703 156 65 17 chr12 78905272 78906876 -42350654 - L1_Mur2 LINE L1 -437 5443 3760 6 1187 1703 182 47 16 chr12 78906866 78907252 -42350278 - L1_Mur2 LINE L1 -5882 1204 807 6 1187 1189 158 51 5 chr12 78907447 78907663 -42349867 - URR1A DNA MER1_type 0 226 1 6 1187 380 292 0 34 chr12 78908298 78908415 -42349115 - PB1D7 SINE Alu -6 114 2 6 1187 221 333 0 0 chr12 78909227 78909290 -42348240 + GA-rich Low_complexity Low_complexity 3 65 0 6 1187 617 328 116 28 chr12 78911238 78912038 -42345492 - L1MC4 LINE L1 -128 7754 6816 6 1187 437 335 132 24 chr12 78912535 78913033 -42344497 + L1MC4 LINE L1 7345 7896 -146 6 1187 431 214 206 36 chr12 78913098 78913263 -42344267 + B3A SINE B2 1 193 -5 6 1187 733 318 99 21 chr12 78913594 78914027 -42343503 - LTR83 LTR ERVL -36 744 278 6 1187 1800 217 140 37 chr12 78914628 78915499 -42342031 - RMER1B Other Other -302 728 46 6 1187 26 30 0 0 chr12 78915796 78915829 -42341701 + AT_rich Low_complexity Low_complexity 1 33 0 6 1187 1393 203 19 26 chr12 78915829 78916138 -42341392 - Lx5 LINE L1 -9 7041 6735 6 1187 3610 191 28 32 chr12 78916145 78916891 -42340639 - Lx5 LINE L1 -455 6595 5853 6 1187 4339 150 68 43 chr12 78916896 78917765 -42339765 + RMER19B LTR ERVK 1 891 -11 6 1187 4431 175 10 2 chr12 78917774 78918563 -42338967 - Lx5 LINE L1 -29 5848 5054 6 1187 251 98 0 47 chr12 78918621 78918656 -42338874 - Lx5 LINE L1 -834 5046 5012 6 1187 8121 84 71 3 chr12 78918656 78919818 -42337712 - Lx2 LINE L1 0 6997 5756 6 1187 2158 185 15 129 chr12 78919832 78920444 -42337086 - L1_Mur2 LINE L1 -3773 2370 1809 6 1187 866 147 13 0 chr12 78921306 78921462 -42336068 + GA-rich Low_complexity Low_complexity 2 159 0 6 1187 3079 161 91 66 chr12 78921462 78922366 -42335164 - L1_Mur2 LINE L1 -4054 1823 909 6 1187 189 0 0 0 chr12 78922366 78922387 -42335143 + (GCTG)n Simple_repeat Simple_repeat 2 22 0 6 1187 1250 237 19 72 chr12 78922387 78922428 -42335102 - L1_Mur2 LINE L1 -6793 935 888 6 1187 831 265 46 112 chr12 78923207 78923492 -42334038 - B4 SINE B4 0 292 27 6 1187 349 296 170 16 chr12 78923993 78924175 -42333355 + MIR SINE MIR 37 246 -16 6 1187 762 261 14 33 chr12 78925323 78925537 -42331993 - B4 SINE B4 -80 212 3 6 1187 1014 88 62 6 chr12 78926375 78926535 -42330995 + B2_Mm2 SINE B2 2 170 -25 6 1187 341 174 60 0 chr12 78926757 78926833 -42330697 + MIR SINE MIR 81 164 -104 6 1187 982 225 24 5 chr12 78927872 78928082 -42329448 - B3 SINE B2 0 216 3 6 1187 393 299 50 38 chr12 78928592 78928752 -42328778 - RSINE1 SINE B4 -2 163 2 6 1187 1117 96 5 50 chr12 78929034 78929232 -42328298 - RMER6C LTR ERVK 0 690 502 6 1187 244 220 17 0 chr12 78929257 78929375 -42328155 + (AACTG)n Simple_repeat Simple_repeat 1 120 0 6 1187 573 168 151 0 chr12 78929763 78929882 -42327648 - B2_Mm2 SINE B2 -55 140 4 6 1187 509 250 6 26 chr12 78929909 78930065 -42327465 - MYSERV6-int LTR ERVK -5763 3196 3044 6 1187 821 138 0 52 chr12 78930065 78930218 -42327312 + RMER6C LTR ERVK 546 690 0 6 1187 4886 125 6 0 chr12 78930364 78931060 -42326470 + RMER6-int LTR ERVK 745 1444 -1733 6 1187 27 0 0 0 chr12 78931862 78931889 -42325641 + AT_rich Low_complexity Low_complexity 1 27 0 6 1187 29 28 0 0 chr12 78933565 78933601 -42323929 + AT_rich Low_complexity Low_complexity 1 36 0 6 1187 455 0 18 0 chr12 78933693 78933748 -42323782 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1187 927 246 5 5 chr12 78933751 78933935 -42323595 - B3 SINE B2 -30 186 3 6 1187 1178 55 0 14 chr12 78934016 78934164 -42323366 - B1_Mus2 SINE Alu 0 147 2 6 1187 317 300 27 0 chr12 78934219 78934329 -42323201 - MER20 DNA MER1_type -106 113 1 6 1187 207 196 43 0 chr12 78934797 78934843 -42322687 - L2a LINE L2 -2 3424 3377 6 1187 204 331 86 31 chr12 78935116 78935244 -42322286 - MIR SINE MIR -93 169 35 6 1187 612 268 291 36 chr12 78936915 78937693 -42319837 + L2 LINE L2 1699 2674 -745 6 1187 728 22 11 0 chr12 78937711 78937801 -42319729 + (TC)n Simple_repeat Simple_repeat 2 92 0 6 1187 353 305 59 87 chr12 78937865 78938047 -42319483 + L1ME3 LINE L1 3826 3997 -2149 6 1187 1234 128 23 0 chr12 78938047 78938266 -42319264 + Lx2A1 LINE L1 6779 7002 -6 6 1187 353 305 59 87 chr12 78938266 78938622 -42318908 + L1ME3 LINE L1 3998 4349 -1797 6 1187 689 301 45 0 chr12 78938644 78938843 -42318687 + ID_B1 SINE B4 12 219 -5 6 1187 798 301 116 14 chr12 78938867 78939289 -42318241 + L1ME3 LINE L1 4383 4847 -1299 6 1187 581 272 0 0 chr12 78939357 78939482 -42318048 + RSINE1 SINE B4 1 125 -40 6 1187 449 71 0 14 chr12 78939483 78939554 -42317976 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1187 225 83 0 0 chr12 78939761 78939797 -42317733 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1187 471 60 0 0 chr12 78939799 78939866 -42317664 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 6 1187 1134 112 0 0 chr12 78939894 78940072 -42317458 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 6 1187 669 76 0 0 chr12 78940072 78940163 -42317367 + (CAGA)n Simple_repeat Simple_repeat 2 93 0 6 1187 251 291 40 101 chr12 78940179 78940328 -42317202 + L1ME3 LINE L1 5427 5566 -613 6 1187 364 293 79 40 chr12 78940491 78940802 -42316728 + L1ME3 LINE L1 5773 6097 -65 6 1187 428 292 129 71 chr12 78943500 78943710 -42313820 - ID_B1 SINE B4 0 224 3 7 1187 207 0 0 0 chr12 78945075 78945098 -42312432 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 7 1187 506 200 226 33 chr12 78945368 78945549 -42311981 + B3 SINE B2 1 216 0 7 1187 625 242 0 0 chr12 78947002 78947122 -42310408 + RMER1B Other Other 593 712 -354 7 1187 4914 2 0 0 chr12 78947339 78947871 -42309659 + L1Md_A LINE L1 6051 6582 0 7 1187 1873 167 102 57 chr12 78947974 78948445 -42309085 + RMER1C Other Other 843 1334 -8 7 1187 885 274 326 0 chr12 78948550 78948910 -42308620 + Lx8 LINE L1 6815 7292 -181 7 1187 24 0 0 0 chr12 78948989 78949013 -42308517 + AT_rich Low_complexity Low_complexity 1 24 0 7 1187 435 38 0 0 chr12 78949541 78949594 -42307936 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1187 1224 78 0 0 chr12 78949746 78949991 -42307539 + (GAAA)n Simple_repeat Simple_repeat 1 245 0 7 1187 1361 96 17 0 chr12 78949994 78950172 -42307358 - B2_Mm2 SINE B2 -14 181 1 7 1187 1057 309 24 24 chr12 78950657 78951072 -42306458 + Lx8 LINE L1 6984 7398 -75 7 1187 304 224 26 13 chr12 78951698 78951775 -42305755 + ID4 SINE ID 4 81 -2 7 1187 250 295 0 16 chr12 78951852 78951870 -42305660 + ID SINE ID 65 81 -143 7 1187 272 245 0 0 chr12 78951870 78951919 -42305611 + B1F1 SINE Alu 1 49 -100 7 1187 405 0 0 0 chr12 78952452 78952497 -42305033 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1187 193 333 58 35 chr12 78953293 78953380 -42304150 - L2a LINE L2 -1 3425 3337 7 1187 251 310 16 41 chr12 78955155 78955276 -42302254 + ID_B1 SINE B4 104 221 -3 7 1187 267 264 45 11 chr12 78955289 78955377 -42302153 + BC1_Mm scRNA scRNA 3 93 -59 7 1187 258 262 11 203 chr12 78955314 78955496 -42302034 + ID_B1 SINE B4 30 176 -48 7 1187 370 204 26 69 chr12 78955403 78955519 -42302011 + PB1D7 SINE Alu 10 120 0 7 1187 424 198 0 47 chr12 78956293 78956378 -42301152 - ID4 SINE ID -1 82 2 7 1187 273 311 32 32 chr12 78956404 78956497 -42301033 + PB1D10 SINE Alu 12 104 -13 7 1187 261 0 0 0 chr12 78956498 78956527 -42301003 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1187 201 282 89 9 chr12 78957172 78957253 -42300277 + MIRm SINE MIR 106 184 -84 7 1187 318 348 37 7 chr12 78957462 78957598 -42299932 - MLT1F1 LTR MaLR -385 184 45 7 1187 423 0 0 0 chr12 78957948 78957995 -42299535 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1187 737 287 92 55 chr12 78962609 78962934 -42294596 - Lx8 LINE L1 -3 7470 7134 7 1187 247 269 15 0 chr12 78963185 78963252 -42294278 + L2a LINE L2 3359 3426 0 7 1187 231 319 237 9 chr12 78963646 78963760 -42293770 + B1F1 SINE Alu 2 141 -8 7 1187 286 221 0 14 chr12 78963895 78963964 -42293566 - L2 LINE L2 -776 2643 2576 7 1187 212 184 0 20 chr12 78963965 78964015 -42293515 - L2 LINE L2 -1004 2415 2367 7 1187 479 314 105 24 chr12 78964149 78964531 -42292999 - L2 LINE L2 -1265 2154 1742 7 1187 861 83 21 0 chr12 78965406 78965551 -42291979 + (TAGA)n Simple_repeat Simple_repeat 4 151 0 7 1187 225 279 142 19 chr12 78966588 78966694 -42290836 + MIR SINE MIR 27 145 -63 7 1187 215 245 19 0 chr12 78966832 78966885 -42290645 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 7 1187 216 214 0 0 chr12 78967577 78967633 -42289897 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1187 387 0 0 0 chr12 78968219 78968262 -42289268 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1187 1133 254 131 12 chr12 78968412 78968747 -42288783 + MTE2b LTR MaLR 5 379 0 7 1187 592 228 67 29 chr12 78970031 78970208 -42287322 - B3 SINE B2 -5 193 11 7 1187 492 242 42 84 chr12 78970459 78970646 -42286884 - L1M6 LINE L1 -837 1924 1606 7 1187 8214 49 2 0 chr12 78972210 78973297 -42284233 - L1Md_F2 LINE L1 -12 6570 5482 7 1187 6049 52 0 0 chr12 78973295 78974031 -42283499 + L1Md_F2 LINE L1 4763 5498 -385 7 1187 248 306 40 10 chr12 78974534 78974633 -42282897 - RLTR24 LTR ERV1 -75 454 353 7 1187 252 122 0 0 chr12 78974646 78974687 -42282843 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1187 308 272 11 0 chr12 78974848 78974940 -42282590 - RLTR24 LTR ERV1 -436 93 1 7 1187 1336 51 23 0 chr12 78974989 78975524 -42282006 + (TGGA)n Simple_repeat Simple_repeat 1 547 0 7 1187 21 0 0 0 chr12 78976021 78976042 -42281488 + AT_rich Low_complexity Low_complexity 1 21 0 7 1187 8577 137 29 22 chr12 78976048 78977769 -42279761 - Lx2B LINE L1 -6 6994 5261 7 1187 4103 133 11 29 chr12 78977770 78978467 -42279063 + Lx2B LINE L1 4577 5261 -616 7 1187 1088 211 185 101 chr12 78979427 78979855 -42277675 + MT2A LTR ERVL 1 464 -69 7 1187 36294 42 0 3 chr12 78979871 78985112 -42272418 + L1Md_T LINE L1 271 5589 -297 7 1187 8568 34 0 2 chr12 78985112 78986143 -42271387 + L1Md_T LINE L1 5590 6585 0 7 1187 10149 22 1 0 chr12 78986143 78987301 -42270229 + L1Md_T LINE L1 4427 5585 -298 7 1187 8541 31 0 0 chr12 78987302 78988286 -42269244 + L1Md_T LINE L1 5587 6570 -12 7 1187 25 31 0 0 chr12 78988286 78988318 -42269212 + AT_rich Low_complexity Low_complexity 1 32 0 7 1187 369 0 0 0 chr12 78988321 78988362 -42269168 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1187 335 60 0 39 chr12 78988369 78988421 -42269109 + MT2A LTR ERVL 535 584 0 7 1187 227 343 63 21 chr12 78988583 78988726 -42268804 - MIRb SINE MIR -11 257 109 7 1187 774 306 113 77 chr12 78989043 78989783 -42267747 - L1ME3A LINE L1 -12 6161 5395 7 1187 284 284 35 14 chr12 78989870 78990013 -42267517 - L1ME3A LINE L1 -765 5408 5263 7 1187 371 314 91 42 chr12 78990185 78990448 -42267082 - L1ME3A LINE L1 -969 5177 4902 7 1187 561 321 50 5 chr12 78990542 78990764 -42266766 - MLT1D LTR MaLR -261 244 13 7 1187 192 305 0 33 chr12 78991937 78991998 -42265532 - MIR3 SINE MIR -8 200 142 7 1187 640 337 45 85 chr12 78992112 78992605 -42264925 - MARNA DNA Mariner -31 555 83 7 1187 494 273 103 0 chr12 78992830 78992995 -42264535 - B3A SINE B2 -15 183 2 7 1187 3013 89 2 26 chr12 78993219 78993636 -42263894 + MTB_Mm LTR MaLR 1 407 0 7 1187 502 278 16 48 chr12 78993637 78993826 -42263704 + L1MA6 LINE L1 4909 5091 -1052 7 1187 186 128 0 0 chr12 78993878 78993917 -42263613 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1187 245 215 202 0 chr12 78993919 78993998 -42263532 + L1MA6 LINE L1 5085 5179 -964 7 1187 690 13 0 0 chr12 78994189 78994268 -42263262 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1187 1830 284 65 58 chr12 78994524 78995338 -42262192 + L1MA6 LINE L1 5457 6276 -24 7 1187 206 207 17 0 chr12 78996066 78996124 -42261406 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1187 942 279 9 0 chr12 78996182 78996404 -42261126 - B4A SINE B4 -14 278 55 7 1187 630 71 0 0 chr12 78996412 78996496 -42261034 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 7 1187 189 0 0 0 chr12 78997659 78997680 -42259850 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1187 316 306 106 18 chr12 78998931 78999044 -42258486 - B4A SINE B4 -7 285 163 7 1187 370 219 15 15 chr12 79000839 79000969 -42256561 + (TATATG)n Simple_repeat Simple_repeat 1 130 0 1 1187 709 140 34 23 chr12 79000982 79001158 -42256372 + (TATG)n Simple_repeat Simple_repeat 2 179 0 2 1187 405 223 0 33 chr12 79001177 79001330 -42256200 + (TATATG)n Simple_repeat Simple_repeat 1 148 0 3 1187 636 158 28 28 chr12 79001337 79001513 -42256017 + (TATG)n Simple_repeat Simple_repeat 4 179 0 4 1187 24 77 0 0 chr12 79002168 79002220 -42255310 + AT_rich Low_complexity Low_complexity 1 52 0 5 1187 463 243 0 18 chr12 79002256 79002369 -42255161 - MLT1A1 LTR MaLR 0 408 298 6 1187 265 298 36 129 chr12 79002390 79002583 -42254947 - MLT1A1 LTR MaLR -193 215 41 6 1187 763 186 42 28 chr12 79003566 79003710 -42253820 + B1_Mus2 SINE Alu 2 147 0 7 1187 494 233 104 15 chr12 79004132 79004267 -42253263 + B1_Mm SINE Alu 1 147 0 8 1187 204 150 25 0 chr12 79004411 79004451 -42253079 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1187 249 303 233 6 chr12 79004459 79004635 -42252895 - Tigger5 DNA MER2_type -2184 222 7 1 1187 236 286 0 83 chr12 79005320 79005404 -42252126 + ID4 SINE ID 2 78 -5 1 1187 375 78 0 0 chr12 79005405 79005456 -42252074 + (TAG)n Simple_repeat Simple_repeat 3 53 0 1 1187 317 276 0 26 chr12 79005927 79006005 -42251525 - B4A SINE B4 -176 116 41 1 1187 459 298 79 7 chr12 79008041 79008193 -42249337 + MER74C LTR ERVL 213 375 -85 1 1187 520 264 23 8 chr12 79008324 79008454 -42249076 + RSINE1 SINE B4 3 134 -31 1 1187 25 31 0 0 chr12 79008485 79008517 -42249013 + AT_rich Low_complexity Low_complexity 1 32 0 1 1187 584 142 17 8 chr12 79009154 79009270 -42248260 + B1_Mur3 SINE Alu 1 149 0 1 1187 270 0 0 0 chr12 79009273 79009303 -42248227 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1187 907 160 0 11 chr12 79009303 79009480 -42248050 + GA-rich Low_complexity Low_complexity 5 179 0 1 1187 22 0 0 0 chr12 79009748 79009770 -42247760 + AT_rich Low_complexity Low_complexity 1 22 0 2 1187 927 55 0 31 chr12 79009770 79009900 -42247630 - B1_Mus1 SINE Alu 0 148 23 2 1187 235 306 20 20 chr12 79009932 79010032 -42247498 - MTEb LTR MaLR -8 371 272 2 1187 304 357 42 50 chr12 79010977 79011260 -42246270 - ORR1E LTR MaLR -2 357 77 2 1187 291 266 116 61 chr12 79011488 79011652 -42245878 - MER34A1 LTR ERV1 -6 581 409 2 1187 795 288 103 41 chr12 79012617 79013034 -42244496 - RMER5 LTR ERV1 -77 457 15 2 1187 1013 65 0 7 chr12 79013559 79013698 -42243832 + (AGGGGG)n Simple_repeat Simple_repeat 2 139 0 2 1187 1903 125 35 19 chr12 79014968 79015287 -42242243 - RLTR23 LTR ERV1 0 430 107 2 1187 267 106 15 29 chr12 79015330 79015398 -42242132 + T-rich Low_complexity Low_complexity 2 68 0 2 1187 534 49 171 0 chr12 79015414 79015496 -42242034 - RLTR23 LTR ERV1 -325 105 10 2 1187 643 301 29 57 chr12 79015556 79015976 -42241554 - RLTR6-int LTR ERV1 -64 7714 6991 2 1187 254 229 0 20 chr12 79016481 79016530 -42241000 - MuRRS4-int LTR ERV1 -770 4547 4500 3 1187 1384 304 29 12 chr12 79017504 79017993 -42239537 - MuRRS4-int LTR ERV1 -1040 4023 3527 3 1187 605 225 0 8 chr12 79018588 79018709 -42238821 + Lx9 LINE L1 6690 6809 -835 3 1187 1555 122 31 8 chr12 79018856 79019112 -42238418 + ORR1B1 LTR MaLR 1 262 -132 3 1187 985 210 76 17 chr12 79019113 79019404 -42238126 + Lx9 LINE L1 7337 7644 0 3 1187 692 275 107 30 chr12 79019591 79019891 -42237639 + RMER5 LTR ERV1 33 355 -179 3 1187 763 317 108 0 chr12 79019952 79020211 -42237319 - B4 SINE B4 -5 287 1 3 1187 605 247 37 11 chr12 79020221 79020409 -42237121 + RMER5 LTR ERV1 339 531 -3 3 1187 259 308 26 0 chr12 79020483 79020561 -42236969 + Lx7 LINE L1 7216 7295 -401 3 1187 209 244 0 0 chr12 79021094 79021135 -42236395 + A-rich Low_complexity Low_complexity 1 41 0 3 1187 198 103 0 0 chr12 79021560 79021589 -42235941 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1187 402 21 0 0 chr12 79021592 79021639 -42235891 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 3 1187 4049 44 0 0 chr12 79022356 79022833 -42234697 - L1Md_T LINE L1 0 6582 6106 3 1187 566 279 14 7 chr12 79022908 79023049 -42234481 - MER21B LTR ERV1 -145 718 577 4 1187 2417 123 88 11 chr12 79023055 79023523 -42234007 + RMER17D LTR ERVK 1 504 -385 4 1187 650 114 0 0 chr12 79023523 79023628 -42233902 + RMER17D LTR ERVK 703 807 -2 4 1187 1154 323 24 88 chr12 79023628 79024198 -42233332 - MER21B LTR ERV1 -304 559 27 4 1187 992 130 8 26 chr12 79024199 79024466 -42233064 + (TAGA)n Simple_repeat Simple_repeat 1 262 0 4 1187 1172 246 59 30 chr12 79024591 79024963 -42232567 + LTR37A LTR ERV1 18 400 -26 4 1187 1190 48 7 0 chr12 79025831 79025978 -42231552 + B1_Mus1 SINE Alu 1 148 0 4 1187 246 62 0 0 chr12 79025978 79026010 -42231520 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1187 210 48 70 23 chr12 79026969 79027012 -42230518 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1187 989 325 57 45 chr12 79027073 79027582 -42229948 + MT2A LTR ERVL 12 526 -7 4 1187 900 262 135 50 chr12 79027761 79028183 -42229347 + MER34A1 LTR ERV1 59 516 -71 4 1187 22 35 0 0 chr12 79028376 79028405 -42229125 + AT_rich Low_complexity Low_complexity 1 29 0 4 1187 651 236 23 35 chr12 79028423 79028594 -42228936 - B3A SINE B2 -28 170 2 5 1187 713 173 101 202 chr12 79028691 79029147 -42228383 - RMER17C LTR ERVK 0 410 1 5 1187 189 94 0 0 chr12 79029500 79029532 -42227998 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1187 229 253 34 22 chr12 79029787 79029876 -42227654 + L2a LINE L2 3336 3425 -1 5 1187 495 0 0 0 chr12 79030337 79030392 -42227138 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1187 288 0 0 0 chr12 79030868 79030900 -42226630 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1187 284 48 24 0 chr12 79031236 79031278 -42226252 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1187 7602 46 3 7 chr12 79031302 79032217 -42225313 - L1Md_F2 LINE L1 -13 6569 5658 5 1187 4675 60 2 2 chr12 79032206 79032786 -42224744 + L1Md_F2 LINE L1 5070 5649 -234 5 1187 276 268 44 113 chr12 79033263 79033511 -42224019 - HAL1 LINE L1 -5 2502 2272 5 1187 365 272 90 23 chr12 79034141 79034255 -42223275 - HAL1 LINE L1 -919 1588 1468 5 1187 408 55 0 0 chr12 79034255 79034310 -42223220 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1187 365 272 90 23 chr12 79034310 79034372 -42223158 - HAL1 LINE L1 -1040 1467 1400 5 1187 498 303 18 0 chr12 79034438 79034603 -42222927 - MER58A DNA MER1_type -12 212 45 6 1187 302 0 26 0 chr12 79034813 79034851 -42222679 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1187 496 121 0 21 chr12 79035966 79036059 -42221471 + (TGAG)n Simple_repeat Simple_repeat 1 91 0 6 148 483 206 18 0 chr12 79036393 79036563 -42220967 + GA-rich Low_complexity Low_complexity 2 174 0 6 1188 270 136 0 0 chr12 79036766 79036810 -42220720 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1188 2422 107 3 0 chr12 79036963 79037289 -42220241 - ORR1A2 LTR MaLR 0 327 1 6 1188 881 291 57 68 chr12 79037315 79037405 -42220125 + MTE2a LTR MaLR 1 78 -301 6 1188 447 19 0 0 chr12 79037405 79037457 -42220073 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1188 881 291 57 68 chr12 79037457 79037749 -42219781 + MTE2a LTR MaLR 79 379 0 6 1188 528 16 0 0 chr12 79038719 79038780 -42218750 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1188 234 152 0 0 chr12 79038802 79038861 -42218669 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 6 1188 365 351 34 11 chr12 79040968 79041144 -42216386 - LTR89 LTR ERVL? -7 872 693 7 1188 347 305 23 15 chr12 79041647 79041780 -42215750 - LTR89 LTR ERVL? -740 139 6 7 1188 270 294 136 34 chr12 79042779 79042842 -42214688 + MLT1L LTR MaLR 416 488 -122 7 1188 333 0 0 0 chr12 79042842 79042879 -42214651 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1188 270 294 136 34 chr12 79042879 79042991 -42214539 + MLT1L LTR MaLR 489 608 -2 7 1188 198 0 0 0 chr12 79043717 79043739 -42213791 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1188 1029 40 0 0 chr12 79043739 79043864 -42213666 + (GA)n Simple_repeat Simple_repeat 2 127 0 7 1188 278 325 47 94 chr12 79044494 79044834 -42212696 + ORR1A3 LTR MaLR 3 326 0 7 1188 21 0 0 0 chr12 79045547 79045568 -42211962 + AT_rich Low_complexity Low_complexity 1 21 0 7 1188 384 283 46 46 chr12 79045617 79045769 -42211761 - Lx8 LINE L1 -72 7401 7250 7 1188 229 329 0 25 chr12 79046261 79046342 -42211188 - LTR16A1 LTR ERVL 0 456 378 7 1188 1096 49 21 0 chr12 79046346 79046481 -42211049 + B1_Mm SINE Alu 2 139 -8 7 1188 222 37 0 0 chr12 79046481 79046508 -42211022 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1188 311 394 71 39 chr12 79046567 79046821 -42210709 - LTR16A1 LTR ERVL -65 391 130 7 1188 234 0 0 0 chr12 79047327 79047353 -42210177 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1188 426 69 0 0 chr12 79049607 79049665 -42207865 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1188 353 101 5 0 chr12 79049712 79049777 -42207753 + B1_Mur4 SINE Alu 54 150 0 8 1188 405 58 0 0 chr12 79049787 79049839 -42207691 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 8 1188 195 129 0 0 chr12 79051095 79051126 -42206404 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1188 216 0 0 0 chr12 79051289 79051313 -42206217 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1188 333 62 0 0 chr12 79051431 79051479 -42206051 + (T)n Simple_repeat Simple_repeat 1 48 0 8 1188 450 255 41 28 chr12 79051826 79051971 -42205559 - B1F SINE Alu -2 147 1 8 1188 261 247 60 0 chr12 79051986 79052085 -42205445 + MIR SINE MIR 88 197 -65 8 1188 216 0 0 0 chr12 79052136 79052160 -42205370 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1188 1861 139 33 38 chr12 79052262 79052629 -42204901 + ORR1C1 LTR MaLR 14 378 0 9 1188 1989 109 21 49 chr12 79052897 79052920 -42204610 - Lx3A LINE L1 0 6981 6968 9 1188 288 0 0 0 chr12 79052920 79052952 -42204578 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 9 1188 1989 109 21 49 chr12 79052952 79053257 -42204273 - Lx3A LINE L1 -14 6967 6662 9 1188 981 217 9 19 chr12 79053911 79054122 -42203408 - B3 SINE B2 0 216 8 9 1188 291 114 21 0 chr12 79054513 79054579 -42202951 - L1MC4 LINE L1 0 7882 7827 9 1188 536 225 61 56 chr12 79054755 79054953 -42202577 - L1MC4 LINE L1 -282 7760 7562 9 1188 674 143 0 48 chr12 79055173 79055320 -42202210 - Lx2A1 LINE L1 -1 7007 6868 9 1188 241 146 18 0 chr12 79055523 79055578 -42201952 - L1MC4a LINE L1 0 7882 7827 9 1188 21 36 0 0 chr12 79056019 79056047 -42201483 + AT_rich Low_complexity Low_complexity 1 28 0 9 1188 404 314 62 25 chr12 79057073 79057233 -42200297 - MIR SINE MIR -2 260 95 9 1188 438 234 67 45 chr12 79057239 79057373 -42200157 - RMER15 LTR ERVL -17 558 422 1 1188 1144 262 96 111 chr12 79057513 79058136 -42199394 - RLTR18 LTR ERVK -2 614 1 1 1188 240 289 87 160 chr12 79058453 79058659 -42198871 + RLTR18B LTR ERVK 228 481 -135 1 1188 237 159 0 0 chr12 79058729 79058773 -42198757 + GA-rich Low_complexity Low_complexity 1 44 0 1 1188 2702 72 60 62 chr12 79059230 79059646 -42197884 - RLTR9F LTR ERVK 0 415 1 1 1188 702 132 84 15 chr12 79059997 79060128 -42197402 + RLTR27 LTR ERVK 1 140 -169 1 1188 3262 53 31 0 chr12 79060132 79060545 -42196985 - RLTR10C LTR ERVK -10 426 1 1 1188 1127 102 19 19 chr12 79060545 79060705 -42196825 + RLTR27 LTR ERVK 135 294 -15 1 1188 184 253 174 54 chr12 79061493 79061585 -42195945 - MER5A DNA MER1_type -2 187 85 1 1188 497 264 72 26 chr12 79062119 79062271 -42195259 + RSINE1 SINE B4 4 162 -3 1 1188 279 0 0 0 chr12 79062281 79062312 -42195218 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1 1188 3721 209 41 51 chr12 79062716 79064206 -42193324 + RMER1A Other Other 7 1030 0 1 1188 202 302 41 41 chr12 79064640 79064761 -42192769 + MIR SINE MIR 88 208 -54 1 1188 33 80 0 0 chr12 79064789 79064864 -42192666 + AT_rich Low_complexity Low_complexity 1 75 0 1 1188 1261 246 30 105 chr12 79065491 79065891 -42191639 + MTE2a LTR MaLR 10 379 0 1 1188 717 307 36 50 chr12 79066164 79066524 -42191006 - ORR1E LTR MaLR -4 355 1 1 1188 182 268 65 109 chr12 79066547 79066639 -42190891 - MIRb SINE MIR 0 268 181 1 1188 277 331 120 32 chr12 79066824 79066949 -42190581 + B1F1 SINE Alu 3 138 -11 1 1188 1585 107 4 21 chr12 79067066 79067304 -42190226 - L1Md_F2 LINE L1 0 6582 6349 1 1188 1069 297 75 27 chr12 79067364 79067511 -42190019 - L1MA10 LINE L1 -15 6319 6177 1 1188 2803 124 61 48 chr12 79067511 79067987 -42189543 - RLTR45 LTR ERVK 0 482 1 1 1188 1069 297 75 27 chr12 79067987 79068316 -42189214 - L1MA10 LINE L1 -158 6176 5821 1 1188 690 184 58 43 chr12 79068316 79068497 -42189033 - B3 SINE B2 -1 194 5 1 1188 341 236 234 8 chr12 79068499 79068533 -42188997 - L1MA10 LINE L1 -363 5826 5783 1 1188 261 0 0 0 chr12 79068533 79068562 -42188968 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1188 341 236 234 8 chr12 79068562 79068655 -42188875 - L1MA10 LINE L1 -407 5782 5671 1 1188 969 217 22 17 chr12 79069058 79069236 -42188294 - B3 SINE B2 -37 179 1 1 1188 261 344 44 30 chr12 79069974 79070109 -42187421 - L2 LINE L2 -618 2801 2665 1 1188 229 364 21 94 chr12 79070183 79070374 -42187156 + MLT1J2 LTR MaLR 1 177 -271 1 1188 737 269 11 45 chr12 79070803 79070903 -42186627 + B3A SINE B2 4 102 -96 1 1188 2976 96 28 35 chr12 79070903 79071333 -42186197 - RLTR23 LTR ERV1 -2 428 2 1 1188 737 269 11 45 chr12 79071333 79071411 -42186119 + B3A SINE B2 103 176 -22 1 1188 666 274 18 18 chr12 79071627 79071798 -42185732 - MIR SINE MIR -80 182 12 1 1188 606 229 23 8 chr12 79072515 79072647 -42184883 + ID_B1 SINE B4 90 223 -1 1 1188 287 270 0 0 chr12 79073492 79073555 -42183975 + Charlie9 DNA MER1_type 6 68 -2689 1 1188 216 306 14 0 chr12 79073592 79073664 -42183866 + A-rich Low_complexity Low_complexity 3 75 0 1 1188 185 119 24 0 chr12 79073884 79073926 -42183604 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 1 1188 465 66 0 0 chr12 79074041 79074102 -42183428 + (GGGA)n Simple_repeat Simple_repeat 3 63 0 1 1188 201 108 0 0 chr12 79074957 79074994 -42182536 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1188 971 227 70 5 chr12 79075498 79075697 -42181833 - B3 SINE B2 -3 213 2 1 1188 204 272 141 0 chr12 79075928 79076020 -42181510 - MIR SINE MIR -9 253 149 1 1188 1472 171 0 0 chr12 79076268 79076490 -42181040 - URR1A DNA MER1_type 0 226 5 1 1188 304 293 192 66 chr12 79076581 79076635 -42180895 - L4 LINE RTE -89 1940 1882 1 1188 2331 191 32 0 chr12 79076635 79077043 -42180487 + MTC LTR MaLR 1 421 0 1 1188 304 293 192 66 chr12 79077043 79077489 -42180041 - L4 LINE RTE -148 1881 1378 1 1188 387 272 261 58 chr12 79077605 79078018 -42179512 + MLT1M LTR MaLR 173 669 -3 1 1188 756 215 16 3 chr12 79078148 79078342 -42179188 + L1MD2 LINE L1 5843 6042 -1743 1 1188 209 262 0 0 chr12 79078392 79078434 -42179096 + polypurine Low_complexity Low_complexity 1 42 0 1 1188 929 179 106 75 chr12 79078621 79078820 -42178710 - B3 SINE B2 -11 205 1 1 1188 313 300 49 24 chr12 79079634 79079757 -42177773 - MLT2B3 LTR ERVL -424 130 5 1 1188 232 191 24 0 chr12 79079970 79080012 -42177518 + LTR33 LTR ERVL 473 515 0 1 1188 369 58 0 0 chr12 79080250 79080302 -42177228 + (TCTG)n Simple_repeat Simple_repeat 2 53 0 1 1188 189 0 0 0 chr12 79080324 79080345 -42177185 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1188 493 330 0 0 chr12 79080407 79080418 -42177112 + ID SINE ID 73 83 -141 1 1188 372 322 0 50 chr12 79080418 79080539 -42176991 + PB1D10 SINE Alu 3 117 0 1 1188 354 274 60 86 chr12 79080571 79080687 -42176843 + RSINE1 SINE B4 53 165 0 1 1188 755 223 21 35 chr12 79080911 79081055 -42176475 + B1F SINE Alu 1 142 -7 1 1188 209 293 169 32 chr12 79081304 79081462 -42176068 + MIRb SINE MIR 73 268 0 1 1188 185 338 201 0 chr12 79081524 79081663 -42175867 + MIR3 SINE MIR 37 203 -5 1 1188 268 320 62 15 chr12 79081928 79082058 -42175472 - MIRb SINE MIR -46 222 87 1 1188 973 199 43 29 chr12 79082115 79082322 -42175208 + B3 SINE B2 1 210 -6 1 1188 1469 113 45 5 chr12 79082545 79082767 -42174763 - Lx2 LINE L1 0 6997 6767 1 1188 912 249 16 5 chr12 79082797 79082991 -42174539 + ID_B1 SINE B4 1 196 -28 1 1188 396 0 0 0 chr12 79083006 79083050 -42174480 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1188 210 254 50 17 chr12 79083691 79083751 -42173779 + MIRc SINE MIR 24 85 -183 1 1188 1085 280 52 15 chr12 79083787 79084156 -42173374 + L1MB1 LINE L1 5597 6020 -169 1 1188 494 264 21 118 chr12 79084584 79084872 -42172658 + L1MA10 LINE L1 6027 6286 -48 1 1188 370 275 44 0 chr12 79084872 79084963 -42172567 + ID_B1 SINE B4 115 209 -15 1 1188 815 48 38 0 chr12 79084995 79085100 -42172430 - B1_Mus1 SINE Alu 0 148 40 1 1188 687 266 38 6 chr12 79085171 79085330 -42172200 + RSINE1 SINE B4 2 165 0 1 1188 702 307 124 51 chr12 79085400 79085795 -42171735 + MLT1G1 LTR MaLR 148 571 -8 1 1188 278 298 44 82 chr12 79085799 79085934 -42171596 + MIRb SINE MIR 99 228 -40 1 1188 506 295 107 63 chr12 79086008 79086366 -42171164 - LTR16A1 LTR ERVL -18 438 69 1 1188 1578 234 33 38 chr12 79088361 79088752 -42168778 + MTD LTR MaLR 14 402 -17 1 1188 215 333 92 28 chr12 79088986 79089128 -42168402 + MIR3 SINE MIR 51 201 -7 1 1188 314 317 41 48 chr12 79089174 79089320 -42168210 + MIRb SINE MIR 107 251 -17 1 1188 1013 127 35 29 chr12 79089628 79089798 -42167732 + URR1B DNA MER1_type 55 225 0 1 1188 6147 61 2 5 chr12 79089873 79090692 -42166838 + RLTR22_Mus LTR ERVK 1 817 -991 1 1188 292 291 74 57 chr12 79090978 79091153 -42166377 + RMER12 LTR ERVK 1101 1278 -44 1 1188 198 143 0 0 chr12 79091182 79091217 -42166313 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1188 267 31 0 0 chr12 79091705 79091737 -42165793 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1188 210 37 0 0 chr12 79091808 79091835 -42165695 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1188 971 288 66 8 chr12 79091940 79092199 -42165331 - MTEa LTR MaLR -96 283 10 1 1188 294 29 0 0 chr12 79092460 79092495 -42165035 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1188 330 45 0 0 chr12 79092552 79092596 -42164934 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1188 452 310 82 15 chr12 79093176 79093382 -42164148 + MIRb SINE MIR 37 256 -12 1 1188 662 224 68 94 chr12 79093393 79093585 -42163945 - B3A SINE B2 -5 193 7 1 1188 1142 110 5 0 chr12 79093599 79093818 -42163712 + (TCC)n Simple_repeat Simple_repeat 1 219 0 1 1188 193 369 48 0 chr12 79094024 79094127 -42163403 - L3 LINE CR1 -520 3969 3862 1 1188 384 77 0 0 chr12 79094476 79094528 -42163002 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1188 1644 125 121 98 chr12 79095685 79096041 -42161489 - ORR1B1 LTR MaLR -30 364 1 1 1188 232 167 0 0 chr12 79096721 79096769 -42160761 + (CACAG)n Simple_repeat Simple_repeat 2 49 0 1 1188 2356 98 28 3 chr12 79097836 79098155 -42159375 - ORR1A2 LTR MaLR 0 327 1 1 1188 467 286 88 62 chr12 79099096 79099290 -42158240 + MER20 DNA MER1_type 18 216 -3 1 1188 652 271 177 35 chr12 79099586 79099696 -42157834 - MLT1A LTR MaLR -12 362 224 1 1188 1501 78 16 5 chr12 79099696 79099888 -42157642 - B2_Mm2 SINE B2 0 195 2 1 1188 652 271 177 35 chr12 79099888 79100094 -42157436 - MLT1A LTR MaLR -151 223 1 1 1188 320 332 159 23 chr12 79100152 79100480 -42157050 - MLT1I LTR MaLR 0 411 62 1 1188 216 0 0 0 chr12 79101047 79101071 -42156459 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1188 889 291 70 47 chr12 79101342 79101685 -42155845 - MLT1B LTR MaLR 0 390 40 1 1188 212 328 63 58 chr12 79101870 79102061 -42155469 - L2 LINE L2 -1058 2361 2170 1 1188 195 103 0 0 chr12 79102886 79102915 -42154615 - L2c LINE L2 -2 3385 3357 1 1188 22 0 0 0 chr12 79103399 79103421 -42154109 + AT_rich Low_complexity Low_complexity 1 22 0 1 1188 201 74 0 0 chr12 79103531 79103558 -42153972 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1188 493 287 23 0 chr12 79103779 79103908 -42153622 + B1F SINE Alu 6 137 -12 1 1188 497 214 48 10 chr12 79104384 79104488 -42153042 - RLTR28 LTR ERVL 0 524 417 1 1188 471 133 0 13 chr12 79104458 79104534 -42152996 - RLTR28 LTR ERVL -403 78 4 1 1188 255 297 209 76 chr12 79104539 79104786 -42152744 - MLT1C LTR MaLR -46 421 142 1 1188 2007 142 8 93 chr12 79104870 79105257 -42152273 + ORR1B1 LTR MaLR 41 394 0 2 1188 306 222 47 86 chr12 79105441 79105569 -42151961 + MLT1A1 LTR MaLR 286 408 0 2 1188 238 286 123 9 chr12 79105758 79105864 -42151666 + MLT1I LTR MaLR 280 397 -14 2 1188 2095 149 101 12 chr12 79105876 79106221 -42151309 - ORR1C1 LTR MaLR -2 376 1 2 1188 195 42 0 0 chr12 79106847 79106871 -42150659 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1188 506 245 18 26 chr12 79106971 79107084 -42150446 + PB1D10 SINE Alu 6 117 0 2 1188 469 288 107 30 chr12 79107564 79107761 -42149769 + MLT1C LTR MaLR 254 465 -2 2 1188 8199 37 1 0 chr12 79108394 79109714 -42147816 - L1Md_T LINE L1 0 6582 5262 2 1188 2780 13 0 0 chr12 79109706 79110021 -42147509 + L1Md_T LINE L1 4960 5274 -609 2 1188 303 302 0 20 chr12 79110023 79110121 -42147409 + L1_Mur3 LINE L1 754 849 -6879 2 1188 1980 118 28 22 chr12 79110340 79110660 -42146870 + RLTRETN_Mm LTR ERVK 1 322 0 2 1188 1752 206 38 16 chr12 79110784 79111232 -42146298 + L1_Mur3 LINE L1 865 1322 -6406 2 1188 3972 188 53 175 chr12 79111214 79112335 -42145195 + L1_Mur3 LINE L1 1789 2819 -3061 2 1188 8461 31 0 1 chr12 79112335 79113331 -42144199 + L1Md_A LINE L1 5588 6582 0 2 1188 3688 188 53 175 chr12 79113331 79113784 -42143746 + L1_Mur3 LINE L1 2813 3171 -2709 2 1188 1626 192 80 0 chr12 79113778 79114117 -42143413 - Lx5 LINE L1 -403 6647 6282 2 1188 1430 216 97 16 chr12 79114116 79114497 -42143033 + Lx5 LINE L1 6639 7050 0 2 1188 255 61 0 0 chr12 79114499 79114532 -42142998 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 2 1188 2174 191 14 44 chr12 79114535 79115098 -42142432 + L1_Mur3 LINE L1 3161 3706 -2174 2 1188 3124 238 102 40 chr12 79115140 79115222 -42142308 + Lx7 LINE L1 6577 6662 -1034 2 1188 1377 127 18 18 chr12 79115222 79115447 -42142083 - URR1B DNA MER1_type 0 225 1 2 1188 3124 238 102 40 chr12 79115447 79116302 -42141228 + Lx7 LINE L1 6663 7578 -118 2 1188 330 26 0 0 chr12 79116302 79116341 -42141189 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1188 3124 238 102 40 chr12 79116341 79116439 -42141091 + Lx7 LINE L1 7579 7677 -19 2 1188 251 313 121 0 chr12 79118878 79118961 -42138569 + L2a LINE L2 3289 3381 -45 2 1188 460 237 392 5 chr12 79119555 79119754 -42137776 - B4A SINE B4 -14 278 3 2 1188 1044 303 59 45 chr12 79121902 79122324 -42135206 + MLT1C LTR MaLR 35 462 -5 2 1188 977 223 22 5 chr12 79122517 79122789 -42134741 - RLTR15 LTR ERVK 0 359 14 2 1188 534 311 68 113 chr12 79122832 79123202 -42134328 - ORR1E LTR MaLR -6 353 1 2 1188 396 0 0 0 chr12 79123220 79123264 -42134266 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1188 261 0 0 0 chr12 79123264 79123292 -42134238 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1188 244 302 18 28 chr12 79123734 79123843 -42133687 + CT-rich Low_complexity Low_complexity 6 113 0 2 1188 252 267 66 49 chr12 79124165 79124287 -42133243 - MIRc SINE MIR -45 223 100 2 1188 230 384 105 19 chr12 79125558 79125613 -42131917 + L2 LINE L2 2197 2266 -1153 2 1188 503 53 13 0 chr12 79125613 79125688 -42131842 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1188 230 384 105 19 chr12 79125688 79125842 -42131688 + L2 LINE L2 2267 2424 -995 2 1188 402 335 87 22 chr12 79125958 79126233 -42131297 + L1MEg LINE L1 193 485 -5757 2 1188 275 161 18 0 chr12 79126356 79126412 -42131118 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1188 429 365 25 133 chr12 79126437 79126797 -42130733 - MLT2D LTR ERVL -93 321 1 2 1188 670 335 110 21 chr12 79126797 79127791 -42129739 + L1MEg LINE L1 511 1592 -4650 2 1188 643 305 90 30 chr12 79127891 79128158 -42129372 - B4A SINE B4 -8 284 2 2 1188 328 254 64 14 chr12 79128168 79128308 -42129222 + L1MEg LINE L1 1647 1793 -4449 2 1188 383 273 0 0 chr12 79128388 79128476 -42129054 + Charlie10b DNA MER1_type 1 88 -154 2 1188 278 316 0 0 chr12 79128489 79128546 -42128984 + tRNA-Ala-GCY_ tRNA tRNA 1 57 -18 2 1188 357 288 75 60 chr12 79128574 79128707 -42128823 + Charlie10b DNA MER1_type 100 234 -8 2 1188 258 268 10 0 chr12 79128743 79128840 -42128690 + L1MEg LINE L1 1892 1989 -4253 2 1188 508 311 91 59 chr12 79128981 79128995 -42128535 + L1MEg LINE L1 2213 2226 -3920 2 1188 270 0 0 0 chr12 79128995 79129025 -42128505 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1188 508 311 91 59 chr12 79129025 79129287 -42128243 + L1MEg LINE L1 2227 2506 -3640 2 1188 584 265 15 0 chr12 79129287 79129419 -42128111 + B1F2 SINE Alu 1 134 -15 2 1188 508 311 91 59 chr12 79129419 79129513 -42128017 + L1MEg LINE L1 2507 2596 -3550 2 1188 3056 75 2 2 chr12 79129538 79129938 -42127592 - MTB LTR MaLR 0 400 1 2 1188 260 306 27 0 chr12 79130012 79130123 -42127407 + (TA)n Simple_repeat Simple_repeat 2 115 0 2 1188 342 285 69 16 chr12 79130123 79130369 -42127161 + L1MEg LINE L1 2645 2903 -3243 2 1188 215 239 29 15 chr12 79130369 79130437 -42127093 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1188 279 159 44 9 chr12 79130453 79130567 -42126963 + (TA)n Simple_repeat Simple_repeat 2 119 0 2 1188 8482 60 9 6 chr12 79130568 79130931 -42126599 - L1VL4 LINE L1 -1484 2075 1712 2 1188 2305 73 132 11 chr12 79130931 79131279 -42126251 - RLTR10 LTR ERVK 0 390 1 2 1188 8482 70 5 3 chr12 79131279 79132785 -42124745 - L1VL4 LINE L1 -1848 1711 202 2 1188 368 121 44 0 chr12 79132792 79132883 -42124647 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 1188 2891 149 114 2 chr12 79132978 79133495 -42124035 - RMER15 LTR ERVL 0 575 1 2 1188 27 29 0 0 chr12 79133528 79133562 -42123968 + AT_rich Low_complexity Low_complexity 1 34 0 2 1188 279 235 0 68 chr12 79133639 79133712 -42123818 - RMER21B LTR ERV1 -112 835 768 2 1188 1001 222 121 11 chr12 79133721 79133985 -42123545 - RMER21B LTR ERV1 -275 567 275 2 1188 351 248 27 82 chr12 79134361 79134471 -42123059 - PB1D10 SINE Alu -12 105 2 2 1188 313 358 58 9 chr12 79135415 79135591 -42121939 + MIRb SINE MIR 4 181 -81 2 1188 316 232 514 14 chr12 79135702 79135858 -42121672 + B4A SINE B4 9 244 -48 2 1188 194 0 39 0 chr12 79135858 79135884 -42121646 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1188 259 163 0 39 chr12 79135884 79135926 -42121604 + B4A SINE B4 245 286 -6 2 1188 201 176 0 0 chr12 79135969 79136003 -42121527 + A-rich Low_complexity Low_complexity 1 34 0 2 1188 223 350 25 0 chr12 79136349 79136429 -42121101 + L2a LINE L2 3336 3417 -9 2 1188 809 204 22 22 chr12 79137348 79137528 -42120002 + B3A SINE B2 1 180 -18 2 1188 1943 267 160 26 chr12 79138327 79139306 -42118224 + MTD-int LTR MaLR 36 1254 -4 2 1188 1120 262 120 25 chr12 79139311 79139506 -42118024 + MTD LTR MaLR 3 194 -225 2 1188 5132 69 0 5 chr12 79139506 79140176 -42117354 + L1Md_F2 LINE L1 5916 6582 0 2 1188 1120 262 120 25 chr12 79140176 79140348 -42117182 + MTD LTR MaLR 195 404 -15 2 1188 549 291 116 11 chr12 79141041 79141222 -42116308 + MER58A DNA MER1_type 19 218 -6 2 1188 510 259 62 35 chr12 79142105 79142249 -42115281 - B1F1 SINE Alu -1 148 1 2 1188 255 271 103 86 chr12 79142145 79142262 -42115268 - B4A SINE B4 -97 195 77 2 1188 247 191 21 0 chr12 79142351 79142398 -42115132 + MT2B2 LTR ERVL 197 244 -340 2 1188 25 0 0 0 chr12 79142523 79142548 -42114982 + AT_rich Low_complexity Low_complexity 1 25 0 2 1188 617 111 40 0 chr12 79142622 79142721 -42114809 + URR1B DNA MER1_type 123 225 0 2 1188 419 236 89 47 chr12 79142721 79142792 -42114738 - CYRA11_Mm Unknown Y-chromosome -441 176 99 2 1188 233 289 0 0 chr12 79143170 79143246 -42114284 + (CTATG)n Simple_repeat Simple_repeat 1 76 0 2 1188 547 370 22 65 chr12 79143561 79143928 -42113602 - MLT1A LTR MaLR 0 374 24 2 1188 907 228 49 10 chr12 79144198 79144486 -42113044 + L1MB1 LINE L1 4161 4459 -1687 2 1188 210 275 0 38 chr12 79145277 79145330 -42112200 + ID SINE ID 29 79 -145 2 1188 658 268 89 16 chr12 79145336 79145640 -42111890 + L1MB1 LINE L1 4948 5273 -867 2 1188 957 328 65 28 chr12 79145713 79146503 -42111027 + L1MB1 LINE L1 5348 6166 -2 2 1188 381 267 129 29 chr12 79146512 79146651 -42110879 - MER2B DNA MER2_type -1 335 183 2 1188 354 23 0 0 chr12 79146695 79146738 -42110792 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1188 345 250 14 0 chr12 79146740 79146812 -42110718 - ID4_ SINE ID -9 74 2 2 1188 229 304 36 0 chr12 79146920 79146976 -42110554 - MER2B DNA MER2_type -277 59 2 2 1188 1355 259 123 23 chr12 79146981 79147633 -42109897 + L1MB7 LINE L1 5449 6165 -19 2 1188 700 212 79 132 chr12 79147647 79147677 -42109853 - B3 SINE B2 0 216 187 2 1188 345 47 0 0 chr12 79147677 79147720 -42109810 + (TATG)n Simple_repeat Simple_repeat 4 46 0 2 1188 700 212 79 132 chr12 79147720 79147917 -42109613 - B3 SINE B2 -30 186 3 2 1188 492 18 0 0 chr12 79148364 79148421 -42109109 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1188 378 0 0 0 chr12 79148421 79148462 -42109068 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1188 202 89 64 43 chr12 79148714 79148761 -42108769 + (CTAGT)n Simple_repeat Simple_repeat 5 52 0 2 1188 1018 264 90 63 chr12 79149648 79150096 -42107434 + MT2B LTR ERVL 5 528 -73 2 1188 378 0 0 0 chr12 79150096 79150138 -42107392 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1188 1018 244 106 57 chr12 79150138 79150180 -42107350 + MT2B LTR ERVL 529 600 -1 2 1188 212 279 119 90 chr12 79150601 79150629 -42106901 + ID4_ SINE ID 13 35 -48 2 1188 2092 138 84 3 chr12 79150629 79150984 -42106546 + ORR1C2 LTR MaLR 1 384 0 2 1188 212 279 119 90 chr12 79150984 79151022 -42106508 + ID4_ SINE ID 36 81 -2 2 1188 180 206 164 60 chr12 79151025 79151092 -42106438 + MER5B DNA MER1_type 87 160 -18 2 1188 591 164 0 63 chr12 79151180 79151291 -42106239 + ORR1D1 LTR MaLR 1 104 -270 2 1188 23518 22 5 0 chr12 79151291 79154832 -42102698 - L1Md_A LINE L1 -6 6576 3013 2 1188 1403 191 82 0 chr12 79154835 79155092 -42102438 + ORR1D1 LTR MaLR 91 368 -6 2 1188 359 325 68 11 chr12 79155192 79155382 -42102148 + LTR37A LTR ERV1 226 426 0 2 1188 2033 126 31 19 chr12 79156180 79156323 -42101207 - ORR1A2 LTR MaLR 0 327 190 2 1188 189 0 0 0 chr12 79156323 79156344 -42101186 + (CAGG)n Simple_repeat Simple_repeat 2 22 0 2 1188 2033 126 31 19 chr12 79156344 79156523 -42101007 - ORR1A2 LTR MaLR -138 189 1 2 1188 255 209 13 152 chr12 79159181 79159260 -42098270 + B4 SINE B4 225 292 0 2 1188 579 235 0 0 chr12 79159260 79159426 -42098104 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 1188 844 138 0 37 chr12 79159984 79160119 -42097411 - B1_Mur2 SINE Alu -17 132 3 2 1188 22 0 0 0 chr12 79160311 79160333 -42097197 + AT_rich Low_complexity Low_complexity 1 22 0 2 1188 830 296 127 49 chr12 79160454 79160539 -42096991 - MLT1C LTR MaLR -50 417 317 2 1188 180 0 0 0 chr12 79160539 79160559 -42096971 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 1188 830 296 127 49 chr12 79160559 79160842 -42096688 - MLT1C LTR MaLR -151 316 21 2 1188 1008 200 136 12 chr12 79160992 79161235 -42096295 + B4A SINE B4 1 273 -19 2 1188 1127 225 12 110 chr12 79161333 79161678 -42095852 - Lx6 LINE L1 -236 7224 6914 2 1188 277 220 148 10 chr12 79161927 79162028 -42095502 - Lx6 LINE L1 -339 7121 7007 2 1188 39 38 0 0 chr12 79162242 79162295 -42095235 + AT_rich Low_complexity Low_complexity 1 53 0 2 1188 501 197 78 54 chr12 79162448 79162577 -42094953 - MTD LTR MaLR 0 419 288 2 1188 874 246 71 43 chr12 79162653 79162908 -42094622 - MTD LTR MaLR -152 267 6 2 1188 1226 90 6 0 chr12 79163696 79163874 -42093656 + (TTC)n Simple_repeat Simple_repeat 1 179 0 2 1188 465 207 0 98 chr12 79163985 79164108 -42093422 - ORR1D1 LTR MaLR -263 111 1 2 1188 300 298 65 16 chr12 79164211 79164334 -42093196 - LTR16C LTR ERVL -31 458 330 2 1188 1226 242 52 95 chr12 79164433 79164780 -42092750 - MTD LTR MaLR -77 342 11 2 1188 227 54 0 26 chr12 79165255 79165293 -42092237 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 1188 1842 197 98 75 chr12 79165306 79165414 -42092116 + MT2A LTR ERVL 1 80 -453 2 1188 908 18 9 0 chr12 79165414 79165524 -42092006 + (CTTTG)n Simple_repeat Simple_repeat 3 113 0 3 1188 493 225 44 58 chr12 79165524 79165661 -42091869 - B1_Mus1 SINE Alu -12 136 2 3 1188 1842 197 98 75 chr12 79165661 79166023 -42091507 + MT2A LTR ERVL 81 458 -75 2 1188 570 15 0 0 chr12 79166023 79166090 -42091440 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1188 1842 197 98 75 chr12 79166090 79166138 -42091392 + MT2A LTR ERVL 459 531 -2 2 1189 252 0 0 0 chr12 79168179 79168207 -42089323 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1189 444 19 0 0 chr12 79169050 79169103 -42088427 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1189 324 0 0 0 chr12 79169259 79169295 -42088235 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1189 2152 158 104 3 chr12 79169339 79169713 -42087817 - MTC LTR MaLR -3 418 7 3 1189 6119 161 101 29 chr12 79169719 79170200 -42087330 - MTC-int LTR MaLR 0 1258 787 3 1189 1107 97 14 0 chr12 79170200 79170345 -42087185 - B1_Mus1 SINE Alu 0 148 2 3 1189 6119 161 101 29 chr12 79170345 79171037 -42086493 - MTC-int LTR MaLR -472 786 1 3 1189 2474 163 46 27 chr12 79171037 79171447 -42086083 - MTC LTR MaLR 0 421 4 3 1189 292 309 98 26 chr12 79172091 79172244 -42085286 - MIR3 SINE MIR -8 200 37 3 1189 575 293 73 109 chr12 79172286 79172314 -42085216 + B4A SINE B4 1 24 -268 3 1189 2069 152 12 132 chr12 79172314 79172745 -42084785 + ORR1C2 LTR MaLR 4 382 -2 3 1189 575 293 73 109 chr12 79172745 79173019 -42084511 + B4A SINE B4 25 292 0 3 1189 302 318 149 0 chr12 79174919 79175026 -42082504 - ID_B1 SINE B4 0 224 102 3 1189 258 322 182 0 chr12 79175026 79175040 -42082490 - B1F SINE Alu 0 149 7 3 1189 28 29 0 0 chr12 79175260 79175295 -42082235 + AT_rich Low_complexity Low_complexity 1 35 0 3 1189 239 266 12 71 chr12 79175448 79175533 -42081997 - MIRb SINE MIR -91 177 98 3 1189 428 231 34 8 chr12 79175694 79175812 -42081718 + MER104 DNA Tc2 27 147 -34 3 1189 2162 107 3 0 chr12 79175927 79176217 -42081313 + MERVL_2A-int LTR ERVL 1684 1974 -3787 3 1189 775 254 75 35 chr12 79176224 79176434 -42081096 + B4A SINE B4 56 276 -16 3 1189 318 67 0 0 chr12 79176434 79176479 -42081051 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1189 775 254 75 35 chr12 79176479 79176496 -42081034 + B4A SINE B4 277 292 0 3 1189 182 33 0 62 chr12 79177529 79177561 -42079969 + (TCTCTG)n Simple_repeat Simple_repeat 5 34 0 3 1189 1170 78 0 0 chr12 79177561 79177741 -42079789 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1189 1183 65 0 0 chr12 79177744 79177882 -42079648 - B1_Mus1 SINE Alu -6 142 5 3 1189 192 77 0 0 chr12 79181720 79181746 -42075784 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1189 231 36 0 0 chr12 79184062 79184090 -42073440 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 3 1189 446 361 60 31 chr12 79184228 79184611 -42072919 - L2 LINE L2 -337 3082 2689 3 1189 221 292 83 58 chr12 79184807 79184963 -42072567 - L2 LINE L2 -1457 1962 1803 3 1189 3146 27 3 67 chr12 79185170 79185560 -42071970 - RLTR10B2 LTR ERVK 0 365 1 3 1189 244 363 41 77 chr12 79186672 79186866 -42070664 - L2 LINE L2 -2307 1112 926 3 1189 959 194 106 21 chr12 79186976 79187213 -42070317 + MTE2b LTR MaLR 1 257 -122 3 1189 1052 211 116 107 chr12 79187207 79187562 -42069968 - RLTR18 LTR ERVK -17 495 138 3 1189 1210 238 22 59 chr12 79187531 79187853 -42069677 - RLTR18 LTR ERVK -306 310 1 3 1189 465 186 0 23 chr12 79187853 79187940 -42069590 + MTE2b LTR MaLR 288 372 -7 3 1189 368 158 13 0 chr12 79187997 79188073 -42069457 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1189 561 149 0 0 chr12 79188523 79188637 -42068893 + (TCC)n Simple_repeat Simple_repeat 2 115 0 3 1189 1264 235 78 12 chr12 79189001 79189332 -42068198 + ORR1E LTR MaLR 3 355 -4 3 1189 416 299 40 40 chr12 79189406 79189580 -42067950 - MIR SINE MIR -29 233 60 3 1189 495 202 0 0 chr12 79191471 79191575 -42065955 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 1189 510 298 23 31 chr12 79191646 79191774 -42065756 - RSINE1 SINE B4 -37 128 2 3 1189 423 0 0 0 chr12 79191902 79191949 -42065581 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 3 1189 1371 11 0 43 chr12 79192256 79192444 -42065086 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1189 1116 82 0 0 chr12 79192446 79192581 -42064949 - B1_Mus1 SINE Alu -13 135 1 3 1189 1271 275 78 6 chr12 79194619 79194967 -42062563 - MTE2b LTR MaLR -5 374 2 3 1189 261 57 0 0 chr12 79195080 79195115 -42062415 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1189 562 248 122 48 chr12 79195339 79195568 -42061962 - MIR SINE MIR 0 262 17 3 1189 537 301 135 25 chr12 79195827 79196072 -42061458 + B4 SINE B4 6 277 -15 3 1189 403 290 199 70 chr12 79196953 79197194 -42060336 + B4 SINE B4 3 274 -18 3 1189 459 0 0 0 chr12 79197206 79197257 -42060273 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1189 288 0 0 0 chr12 79197259 79197291 -42060239 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1189 180 0 0 0 chr12 79198046 79198066 -42059464 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1189 288 0 0 0 chr12 79198690 79198722 -42058808 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1189 617 231 0 160 chr12 79199440 79199615 -42057915 - B1F1 SINE Alu 0 149 3 3 1189 203 304 103 17 chr12 79200133 79200250 -42057280 + MIRc SINE MIR 14 140 -128 3 1189 536 287 62 22 chr12 79200304 79200482 -42057048 + MER5A DNA MER1_type 5 189 0 3 1189 297 322 47 52 chr12 79201216 79201378 -42056152 - L2c LINE L2 -2 3385 3253 3 1189 21 0 0 0 chr12 79201610 79201631 -42055899 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 327 274 20 40 chr12 79201668 79201767 -42055763 - RSINE1 SINE B4 -54 111 15 3 1189 291 54 0 0 chr12 79201857 79201894 -42055636 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1189 634 260 0 8 chr12 79201894 79202026 -42055504 - RSINE1 SINE B4 -24 141 11 3 1189 1243 55 7 0 chr12 79202535 79202681 -42054849 - B1_Mus1 SINE Alu 0 148 2 3 1189 446 325 145 24 chr12 79202951 79203206 -42054324 + LTR33A_ LTR ERVL 238 523 -8 3 1189 23 33 0 0 chr12 79203213 79203243 -42054287 + AT_rich Low_complexity Low_complexity 1 30 0 3 1189 271 65 0 0 chr12 79203248 79203294 -42054236 + L1Md_F2 LINE L1 6534 6579 -3 3 1189 251 54 27 0 chr12 79203480 79203517 -42054013 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1189 248 320 146 39 chr12 79203535 79203789 -42053741 + MLT1J LTR MaLR 230 510 -2 3 1189 189 0 0 0 chr12 79203987 79204008 -42053522 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1189 519 17 0 0 chr12 79204487 79204547 -42052983 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1189 729 260 104 30 chr12 79205224 79205426 -42052104 - ID_B1 SINE B4 -7 217 1 3 1189 193 102 0 58 chr12 79205680 79205732 -42051798 + T-rich Low_complexity Low_complexity 5 53 0 3 1189 22 0 0 0 chr12 79205931 79205953 -42051577 + AT_rich Low_complexity Low_complexity 1 22 0 3 1189 28 29 0 0 chr12 79206129 79206164 -42051366 + AT_rich Low_complexity Low_complexity 1 35 0 3 1189 1080 256 29 0 chr12 79206217 79206424 -42051106 - B3 SINE B2 -1 215 3 3 1189 360 0 0 0 chr12 79206459 79206499 -42051031 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1189 471 82 0 0 chr12 79206641 79206714 -42050816 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1189 6885 218 99 13 chr12 79206714 79207847 -42049683 - Lx7 LINE L1 -277 7419 6189 3 1189 537 16 0 0 chr12 79207847 79207909 -42049621 + (TATG)n Simple_repeat Simple_repeat 2 63 0 3 1189 10908 188 81 25 chr12 79207909 79209240 -42048290 - Lx7 LINE L1 -1508 6188 4720 3 1189 263 28 0 27 chr12 79209240 79209277 -42048253 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3 1189 10908 178 76 29 chr12 79209277 79209363 -42048167 - Lx7 LINE L1 -1161 4719 4627 3 1189 234 0 0 0 chr12 79209363 79209389 -42048141 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1189 10908 178 76 29 chr12 79209389 79210646 -42046884 - Lx7 LINE L1 -1254 4626 3360 3 1189 4890 120 25 5 chr12 79210670 79211459 -42046071 + RLTR22_Mur LTR ERVK 1 805 -1043 3 1189 521 271 49 92 chr12 79211612 79211905 -42045625 + RMER12 LTR ERVK 1109 1671 -177 3 1189 878 181 51 0 chr12 79211906 79212083 -42045447 + L1_Mur3 LINE L1 3708 3893 -1987 3 1189 8560 169 57 14 chr12 79212094 79213502 -42044028 - Lx7 LINE L1 -2794 3086 1620 3 1189 2218 183 85 5 chr12 79213502 79213892 -42043638 + MTC LTR MaLR 1 421 0 3 1189 8560 214 40 42 chr12 79213892 79214663 -42042867 - Lx7 LINE L1 -4261 1619 856 3 1189 316 271 42 0 chr12 79215032 79215128 -42042402 - Lx7 LINE L1 -6898 830 731 3 1189 407 232 121 0 chr12 79215228 79215327 -42042203 - B1F SINE Alu -1 148 38 3 1189 1357 146 46 108 chr12 79215406 79215873 -42041657 - RMER17C LTR ERVK -519 439 16 3 1189 271 265 47 24 chr12 79216429 79216489 -42041041 - MLT1C LTR MaLR 0 467 409 3 1189 3435 95 11 6 chr12 79216489 79216955 -42040575 + Lx LINE L1 6182 6649 -5 3 1189 271 265 47 24 chr12 79216955 79216979 -42040551 - MLT1C LTR MaLR -59 408 381 3 1189 403 279 47 37 chr12 79216959 79216979 -42040551 + CYRA11_Mm Unknown Y-chromosome 153 174 -443 3 1189 994 180 22 0 chr12 79216979 79217157 -42040373 - URR1B DNA MER1_type 0 225 44 3 1189 2196 101 6 59 chr12 79217160 79217497 -42040033 - ORR1A2 LTR MaLR -8 319 1 3 1189 4332 61 8 2 chr12 79217586 79218112 -42039418 - L1_Mus2 LINE L1 0 6566 6038 3 1189 269 274 59 50 chr12 79218140 79218259 -42039271 - MLT1C LTR MaLR -124 343 224 3 1189 1914 181 55 105 chr12 79218280 79218775 -42038755 - RLTR40 LTR ERVK -13 804 335 3 1189 298 273 54 69 chr12 79218784 79218914 -42038616 + RMER10A LTR ERVL 12 139 -303 3 1189 296 301 224 29 chr12 79218954 79219200 -42038330 + RMER10A LTR ERVL 119 412 -30 3 1189 1802 149 112 0 chr12 79219199 79219248 -42038282 - RLTR40 LTR ERVK -460 357 286 3 1189 474 108 0 0 chr12 79219248 79219331 -42038199 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1189 1802 149 112 0 chr12 79219331 79219602 -42037928 - RLTR40 LTR ERVK -532 285 2 3 1189 321 297 117 0 chr12 79219602 79219747 -42037783 - MLT1C LTR MaLR -302 165 4 3 1189 441 0 0 0 chr12 79220526 79220575 -42036955 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1189 191 281 187 22 chr12 79220983 79221074 -42036456 - MIR SINE MIR -71 137 32 3 1189 660 74 0 0 chr12 79221576 79221671 -42035859 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 3 1189 237 33 0 0 chr12 79221671 79221701 -42035829 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1189 973 143 13 13 chr12 79222554 79222703 -42034827 + B1_Mur4 SINE Alu 2 150 0 3 1189 256 24 24 24 chr12 79222707 79222749 -42034781 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1189 649 233 38 0 chr12 79223040 79223173 -42034357 + B3A SINE B2 5 142 -56 3 1189 10768 17 0 0 chr12 79223195 79224492 -42033038 + L1Md_T LINE L1 4290 5586 -297 3 1189 8483 33 0 0 chr12 79224492 79225487 -42032043 + L1Md_T LINE L1 5587 6581 -1 3 1189 4540 88 70 0 chr12 79225557 79226197 -42031333 + Lx3C LINE L1 6278 6962 -14 3 1189 285 271 40 32 chr12 79226240 79226366 -42031164 + L1MB7 LINE L1 5539 5665 -509 3 1189 316 333 8 0 chr12 79226404 79226536 -42030994 + L1MA9 LINE L1 3661 3793 -2347 3 1189 629 277 46 24 chr12 79226526 79226829 -42030701 + L1MA4 LINE L1 5553 5930 -370 4 1189 459 0 0 0 chr12 79227029 79227080 -42030450 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1189 278 273 0 25 chr12 79227252 79227331 -42030199 + L1MA9 LINE L1 3766 3845 -2298 3 1189 1426 259 176 17 chr12 79227348 79228157 -42029373 + L1MA9 LINE L1 5317 6253 -59 3 1189 356 367 0 18 chr12 79228160 79228271 -42029259 + PB1D10 SINE Alu 6 114 -3 4 1189 1142 254 68 12 chr12 79228351 79228778 -42028752 + L1MB7 LINE L1 5693 6143 -41 3 1189 731 296 27 27 chr12 79228843 79229062 -42028468 - B4A SINE B4 -1 291 73 4 1189 1467 211 135 50 chr12 79229486 79229870 -42027660 - MTD LTR MaLR 0 419 3 4 1189 189 0 0 0 chr12 79229945 79229966 -42027564 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1189 426 211 45 55 chr12 79229978 79230088 -42027442 + PB1D10 SINE Alu 7 115 -2 4 1189 591 322 27 52 chr12 79231534 79231937 -42025593 - Lx8 LINE L1 -3 7470 7078 4 1189 335 175 233 0 chr12 79232443 79232546 -42024984 - MER53 DNA hAT -66 127 1 4 1189 1288 280 70 77 chr12 79233016 79233731 -42023799 + L2 LINE L2 1456 2165 -1254 4 1189 953 315 37 64 chr12 79233736 79234140 -42023390 - MLT1C LTR MaLR -74 393 1 4 1189 317 337 173 5 chr12 79234794 79234991 -42022539 + MIR SINE MIR 10 239 -23 4 1189 217 258 28 70 chr12 79235038 79235109 -42022421 - MIR SINE MIR -83 125 58 4 1189 234 316 25 25 chr12 79235312 79235393 -42022137 - L2 LINE L2 -644 2775 2695 4 1189 645 301 6 18 chr12 79235840 79236006 -42021524 + RSINE1 SINE B4 2 165 0 4 1189 428 214 0 0 chr12 79236325 79236409 -42021121 - PB1D7 SINE Alu -35 85 2 4 1189 696 250 136 0 chr12 79236782 79237046 -42020484 + L1MA7 LINE L1 5820 6119 -172 4 1189 384 264 18 18 chr12 79237337 79237448 -42020082 + ID_B1 SINE B4 86 192 -32 4 1189 474 146 0 0 chr12 79237479 79237561 -42019969 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 4 1189 381 70 0 0 chr12 79238625 79238682 -42018848 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 4 1189 708 230 207 43 chr12 79238988 79239335 -42018195 + MTC LTR MaLR 1 404 -17 4 1189 188 34 0 33 chr12 79239942 79239972 -42017558 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1189 4182 62 4 2 chr12 79241549 79242079 -42015451 + L1_Mus2 LINE L1 6032 6562 -4 4 1189 251 254 66 91 chr12 79242578 79242699 -42014831 + LTR86C LTR ERVL 490 607 -14 4 1189 3918 66 12 0 chr12 79242753 79243252 -42014278 - L1_Mus1 LINE L1 0 6567 6063 4 1189 650 250 0 0 chr12 79243906 79244038 -42013492 + RSINE1 SINE B4 3 134 -31 4 1189 540 30 0 0 chr12 79244040 79244106 -42013424 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1189 347 253 21 32 chr12 79244234 79244328 -42013202 - MER81 DNA AcHobo -20 94 2 4 1189 665 290 51 25 chr12 79244575 79245041 -42012489 + L1MB4 LINE L1 5588 6097 -87 4 1189 694 287 68 87 chr12 79245055 79245421 -42012109 - ORR1E LTR MaLR 0 359 1 4 1189 228 167 40 40 chr12 79245421 79245496 -42012034 + L1MB4 LINE L1 6105 6179 -1 4 1189 504 312 97 26 chr12 79245948 79246490 -42011040 - L1MEc LINE L1 -1197 5122 4510 4 1189 550 248 117 0 chr12 79246536 79246681 -42010849 - RSINE1 SINE B4 -2 163 2 4 1189 366 293 66 6 chr12 79246682 79246864 -42010666 - L1MEc LINE L1 -3941 2459 2267 4 1189 260 211 81 40 chr12 79246911 79246985 -42010545 - PB1D10 SINE Alu -1 116 40 4 1189 325 315 8 8 chr12 79247232 79247363 -42010167 - L1MEc LINE L1 -5632 768 638 4 1189 1805 102 48 73 chr12 79247671 79247987 -42009543 + ORR1A2 LTR MaLR 1 308 -19 4 1189 310 367 73 26 chr12 79247988 79248220 -42009310 - L1MEc LINE L1 -6120 280 38 4 1189 889 249 134 0 chr12 79248303 79248512 -42009018 + B4 SINE B4 40 276 -16 4 1189 228 242 14 127 chr12 79248484 79248555 -42008975 + RSINE1 SINE B4 103 165 0 4 1189 6845 106 20 16 chr12 79248617 79250117 -42007413 - Lx LINE L1 -6 6648 5138 4 1189 631 272 67 0 chr12 79250114 79250338 -42007192 + L1MA9 LINE L1 5845 6083 -229 4 1189 273 319 102 36 chr12 79250697 79250863 -42006667 + MIR SINE MIR 15 191 -71 4 1189 334 269 174 15 chr12 79251177 79251309 -42006221 - MLT1H2 LTR MaLR -282 207 55 4 1189 195 152 0 0 chr12 79251722 79251768 -42005762 + A-rich Low_complexity Low_complexity 1 46 0 4 1189 216 0 0 0 chr12 79252844 79252868 -42004662 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1189 192 350 50 25 chr12 79254007 79254127 -42003403 + MIRc SINE MIR 31 153 -115 4 1189 258 194 0 0 chr12 79254411 79254473 -42003057 + CT-rich Low_complexity Low_complexity 3 64 0 4 1189 201 278 0 77 chr12 79254484 79254562 -42002968 + C-rich Low_complexity Low_complexity 3 74 0 4 1189 361 313 51 25 chr12 79255162 79255280 -42002250 + L2a LINE L2 3304 3424 -2 4 1189 691 194 85 0 chr12 79255336 79255465 -42002065 + B1_Mus2 SINE Alu 1 140 -7 4 1189 570 291 60 0 chr12 79257168 79257302 -42000228 + RSINE1 SINE B4 2 143 -22 4 1189 230 309 37 141 chr12 79257302 79257409 -42000121 + B3 SINE B2 1 216 0 4 1189 233 368 25 38 chr12 79257509 79257588 -41999942 + ID4_ SINE ID 1 78 -5 4 1189 239 203 152 0 chr12 79257823 79257882 -41999648 + PB1D10 SINE Alu 33 100 -17 4 1189 238 315 25 67 chr12 79258050 79258169 -41999361 + MIR SINE MIR 28 141 -67 4 1189 248 323 48 57 chr12 79258288 79258393 -41999137 - L2b LINE L2 -2 3373 3270 4 1189 185 268 0 0 chr12 79258463 79258504 -41999026 - L2a LINE L2 -8 3418 3378 4 1189 1346 109 19 5 chr12 79258594 79258805 -41998725 + Lx LINE L1 6441 6654 0 4 1189 419 261 43 11 chr12 79260978 79261071 -41996459 + B4A SINE B4 1 96 -196 4 1189 3458 253 50 35 chr12 79261071 79262119 -41995411 + Lx8 LINE L1 6265 7327 -146 4 1189 387 0 0 0 chr12 79262119 79262162 -41995368 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1189 354 275 39 0 chr12 79262302 79262438 -41995092 + B4 SINE B4 96 282 -10 4 1189 28 48 0 0 chr12 79262708 79262750 -41994780 + AT_rich Low_complexity Low_complexity 1 42 0 4 1189 618 286 31 10 chr12 79263209 79263403 -41994127 + MER3 DNA MER1_type 12 209 0 4 1189 238 307 46 69 chr12 79264202 79264252 -41993278 - MLT1C LTR MaLR -166 224 179 4 1189 374 269 102 0 chr12 79264252 79264360 -41993170 - PB1D7 SINE Alu 0 120 2 4 1189 343 284 66 2 chr12 79264360 79264484 -41993046 - MLT1C LTR MaLR -286 181 54 4 1189 219 139 93 0 chr12 79264475 79264518 -41993012 + B1_Mus2 SINE Alu 95 141 -6 4 1189 465 50 0 0 chr12 79264519 79264579 -41992951 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1189 351 257 119 0 chr12 79264634 79264735 -41992795 - MIR SINE MIR -126 136 24 4 1189 821 274 10 0 chr12 79264813 79265017 -41992513 + B3 SINE B2 1 206 -10 4 1189 323 188 15 15 chr12 79265298 79265363 -41992167 + B1_Mur4 SINE Alu 2 66 -84 4 1189 208 135 0 0 chr12 79265364 79265401 -41992129 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1189 653 267 60 97 chr12 79265553 79265927 -41991603 + ORR1E LTR MaLR 8 376 -3 4 1189 1346 293 19 48 chr12 79265930 79266349 -41991181 + ORR1E-int LTR MaLR 1 407 -1173 4 1189 26 30 0 0 chr12 79266364 79266397 -41991133 + AT_rich Low_complexity Low_complexity 1 33 0 4 1189 2392 197 63 153 chr12 79267013 79268358 -41989172 + RMER1B Other Other 46 1062 -4 4 1189 1731 283 17 60 chr12 79268388 79268578 -41988952 - Lx7 LINE L1 -388 7308 7143 4 1189 1261 14 0 7 chr12 79268578 79268725 -41988805 - B1_Mus2 SINE Alu 0 147 2 4 1189 1731 283 17 60 chr12 79268725 79269131 -41988399 - Lx7 LINE L1 -554 7142 6738 4 1189 1430 298 123 54 chr12 79269133 79269971 -41987559 + ORR1E-int LTR MaLR 420 1421 -159 4 1189 224 30 30 0 chr12 79269971 79270004 -41987526 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4 1189 1430 287 121 20 chr12 79270004 79270142 -41987388 + ORR1E-int LTR MaLR 1422 1552 -28 4 1189 267 240 2 42 chr12 79270835 79270919 -41986611 + MIR SINE MIR 171 256 -12 4 1189 1239 133 31 0 chr12 79271887 79272083 -41985447 - ORR1C1 LTR MaLR 0 378 177 4 1189 27 29 0 0 chr12 79272932 79272966 -41984564 + AT_rich Low_complexity Low_complexity 1 34 0 4 1189 24 32 0 0 chr12 79273302 79273333 -41984197 + AT_rich Low_complexity Low_complexity 1 31 0 4 1189 409 292 83 0 chr12 79273692 79273812 -41983718 - Charlie14a DNA MER1_type -1 1163 1034 4 1189 243 342 0 25 chr12 79274422 79274503 -41983027 + MIRm SINE MIR 190 268 -8 4 1189 184 302 124 34 chr12 79274500 79274589 -41982941 + MIRb SINE MIR 22 118 -150 4 1189 198 321 49 12 chr12 79274919 79275001 -41982529 + MIR SINE MIR 26 110 -152 4 1189 26 0 0 0 chr12 79276983 79277009 -41980521 + AT_rich Low_complexity Low_complexity 1 26 0 4 1189 1148 239 75 9 chr12 79278635 79279093 -41978437 - Lx7 LINE L1 -675 5625 5108 4 1189 490 269 48 0 chr12 79279092 79279237 -41978293 + Lx7 LINE L1 5606 5757 -1939 4 1189 222 62 0 0 chr12 79279238 79279270 -41978260 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1189 3090 80 0 0 chr12 79279328 79279728 -41977802 + MTB LTR MaLR 1 400 0 4 1189 536 242 82 15 chr12 79280043 79280177 -41977353 - B1_Mur2 SINE Alu 0 149 7 4 1189 214 182 146 0 chr12 79280591 79280646 -41976884 + L2a LINE L2 3290 3352 -74 4 1189 216 264 56 0 chr12 79280751 79280823 -41976707 + L2a LINE L2 3351 3426 0 4 1189 4785 30 4 0 chr12 79281424 79281981 -41975549 - L1Md_F2 LINE L1 -1 6581 6023 4 1189 435 264 25 94 chr12 79282074 79282275 -41975255 - B3A SINE B2 -11 187 1 4 1189 714 160 40 186 chr12 79282444 79282792 -41974738 - RLTR23 LTR ERV1 0 430 24 4 1189 25 0 0 0 chr12 79282855 79282880 -41974650 + AT_rich Low_complexity Low_complexity 1 25 0 4 1189 21 0 0 0 chr12 79283166 79283187 -41974343 + AT_rich Low_complexity Low_complexity 1 21 0 4 1189 296 284 18 3 chr12 79283222 79283370 -41974160 - L1M5 LINE L1 -244 5880 5726 4 1189 1086 287 26 0 chr12 79283464 79283732 -41973798 + B4A SINE B4 1 275 -17 4 1189 25 51 0 0 chr12 79283805 79283844 -41973686 + AT_rich Low_complexity Low_complexity 1 39 0 4 1189 287 269 13 13 chr12 79283844 79283923 -41973607 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1189 405 281 29 10 chr12 79283923 79284027 -41973503 - B4A SINE B4 -185 107 2 4 1189 230 245 41 0 chr12 79284919 79284968 -41972562 + ID SINE ID 15 65 -159 4 1189 480 362 0 6 chr12 79285221 79285382 -41972148 + RSINE1 SINE B4 2 161 -4 5 1189 682 269 25 0 chr12 79285405 79285565 -41971965 - B3 SINE B2 -52 164 1 5 1189 5036 58 17 7 chr12 79285718 79286408 -41971122 + L1_Mus3 LINE L1 5912 6608 -30 5 1189 298 336 80 45 chr12 79286409 79286521 -41971009 - MER63A DNA AcHobo -94 116 1 5 1189 228 328 107 110 chr12 79286609 79286965 -41970565 - MLT1L LTR MaLR -82 528 174 5 1189 1051 237 24 9 chr12 79287296 79287509 -41970021 - B3 SINE B2 0 216 1 5 1189 210 37 0 0 chr12 79287906 79287933 -41969597 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1189 23 78 0 0 chr12 79288182 79288233 -41969297 + AT_rich Low_complexity Low_complexity 1 51 0 5 1189 525 360 102 21 chr12 79288493 79288825 -41968705 + ORR1E LTR MaLR 1 359 0 5 1189 237 33 0 0 chr12 79289039 79289069 -41968461 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1189 322 350 115 51 chr12 79289097 79289392 -41968138 + MER102c DNA MER1_type 10 323 -8 5 1189 231 297 54 21 chr12 79290450 79290543 -41966987 - Charlie2b DNA MER1_type -2 2780 2685 5 1189 519 291 0 8 chr12 79290552 79290680 -41966850 + RSINE1 SINE B4 3 129 -36 5 1189 354 209 43 65 chr12 79290814 79290906 -41966624 - B1_Mur1 SINE Alu 0 149 60 5 1189 1015 222 86 27 chr12 79291873 79292210 -41965320 - Charlie2b DNA MER1_type -604 2178 1822 5 1189 391 314 118 9 chr12 79292242 79292454 -41965076 - Charlie2b DNA MER1_type -2455 327 93 5 1189 391 333 72 76 chr12 79292531 79292781 -41964749 - B4 SINE B4 0 292 44 5 1189 628 286 22 22 chr12 79293010 79293192 -41964338 + B3A SINE B2 1 182 -16 5 1189 660 220 28 14 chr12 79293234 79293377 -41964153 + B1_Mur1 SINE Alu 5 149 0 5 1189 195 162 0 0 chr12 79293461 79293498 -41964032 + CT-rich Low_complexity Low_complexity 4 40 0 5 1189 3168 141 207 0 chr12 79293928 79294536 -41962994 - RMER19A LTR ERVK -3 734 1 5 1189 354 281 63 28 chr12 79295681 79295824 -41961706 - Arthur1A DNA Tip100 -3 174 27 5 1189 209 321 102 42 chr12 79295943 79296109 -41961421 - MIRb SINE MIR -80 188 13 5 1189 21 0 0 0 chr12 79296241 79296262 -41961268 + AT_rich Low_complexity Low_complexity 1 21 0 5 1189 288 77 0 0 chr12 79296311 79296350 -41961180 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1189 3474 176 41 82 chr12 79296352 79297229 -41960301 - Lx5 LINE L1 -15 6985 6215 5 1189 228 35 0 0 chr12 79297435 79297464 -41960066 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1189 471 266 0 9 chr12 79297481 79297591 -41959939 - PB1D10 SINE Alu -8 109 1 5 1190 341 52 27 0 chr12 79299946 79300003 -41957527 - B1_Mus2 SINE Alu 0 149 89 5 1190 1040 76 0 76 chr12 79300064 79300221 -41957309 + B1_Mus1 SINE Alu 2 146 -2 5 1190 320 0 25 0 chr12 79300221 79300261 -41957269 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 1190 189 0 0 0 chr12 79300616 79300637 -41956893 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 5 1190 209 190 49 49 chr12 79300870 79300931 -41956599 + L2b LINE L2 2792 2852 -567 5 1190 246 186 0 0 chr12 79301035 79301094 -41956436 - Lx7 LINE L1 -15 7681 7623 5 1190 412 224 94 29 chr12 79301071 79301209 -41956321 + Lx7 LINE L1 6936 7082 -614 5 1190 403 325 82 25 chr12 79301212 79301432 -41956098 + L2b LINE L2 2953 3192 -234 5 1190 21 0 0 0 chr12 79301483 79301504 -41956026 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 377 281 228 12 chr12 79301562 79301724 -41955806 + MIRb SINE MIR 1 197 -71 5 1190 396 352 87 51 chr12 79304229 79304618 -41952912 - L4 LINE RTE -286 1743 1341 5 1190 1664 241 60 10 chr12 79305177 79305563 -41951967 + MTD LTR MaLR 1 405 -14 5 1190 523 287 16 0 chr12 79305751 79305880 -41951650 - B1F SINE Alu -17 132 2 5 1190 2459 53 0 0 chr12 79306232 79306534 -41950996 + L1_Mus1 LINE L1 6266 6567 0 5 1190 269 235 111 17 chr12 79308668 79308785 -41948745 + MER53 DNA hAT 45 172 -21 5 1190 27 0 0 26 chr12 79309073 79309091 -41948439 + AT_rich Low_complexity Low_complexity 1 18 0 5 1190 1251 34 0 0 chr12 79309091 79309239 -41948291 - B1_Mus1 SINE Alu 0 148 1 5 1190 27 0 0 26 chr12 79309239 79309258 -41948272 + AT_rich Low_complexity Low_complexity 1 19 0 5 1190 281 276 13 0 chr12 79309632 79309708 -41947822 - ID4 SINE ID -3 80 4 5 1190 204 338 152 44 chr12 79310358 79310516 -41947014 + L2c LINE L2 2661 2835 -584 5 1190 275 264 0 0 chr12 79310746 79310799 -41946731 - RSINE1 SINE B4 -5 160 108 5 1190 215 344 110 37 chr12 79310795 79310931 -41946599 - B4 SINE B4 -59 233 88 5 1190 599 227 37 8 chr12 79311002 79311137 -41946393 - B1_Mur4 SINE Alu -6 144 1 5 1190 293 372 47 30 chr12 79311181 79311350 -41946180 - MER5B DNA MER1_type 0 178 7 5 1190 563 163 208 16 chr12 79311355 79311480 -41946050 - B1_Mur2 SINE Alu 0 149 1 5 1190 284 348 35 43 chr12 79311503 79311644 -41945886 + L2c LINE L2 3242 3381 -6 5 1190 22 88 0 0 chr12 79312008 79312065 -41945465 + AT_rich Low_complexity Low_complexity 1 57 0 5 1190 473 249 120 25 chr12 79312082 79312246 -41945284 - B3A SINE B2 -39 177 3 5 1190 277 255 46 19 chr12 79312308 79312416 -41945114 + Lx9 LINE L1 7386 7496 -148 5 1190 1162 91 24 0 chr12 79312567 79312732 -41944798 + B2_Mm2 SINE B2 1 169 -26 5 1190 582 309 39 23 chr12 79312878 79313183 -41944347 - L1MA4A LINE L1 -400 5903 5594 5 1190 515 306 40 7 chr12 79313237 79313385 -41944145 - RSINE1 SINE B4 -1 164 12 5 1190 637 272 39 22 chr12 79313395 79313706 -41943824 - L1MA4A LINE L1 -577 5607 5292 5 1190 1469 267 62 22 chr12 79313789 79314382 -41943148 + L1M2 LINE L1 4592 5208 -935 5 1190 375 246 162 26 chr12 79314422 79314539 -41942991 - RSINE1 SINE B4 -17 148 16 5 1190 239 274 0 0 chr12 79314788 79314839 -41942691 - tRNA-Lys-AAG tRNA tRNA -24 52 2 5 1190 335 294 9 38 chr12 79315210 79315316 -41942214 + PB1D10 SINE Alu 2 104 -13 5 1190 523 189 66 83 chr12 79315653 79315774 -41941756 + ID_B1 SINE B4 104 222 -2 5 1190 321 26 0 0 chr12 79316009 79316047 -41941483 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1190 372 253 13 0 chr12 79316059 79316134 -41941396 - B3A SINE B2 -50 148 73 5 1190 368 240 58 135 chr12 79316851 79317058 -41940472 - MTEa LTR MaLR -188 191 1 5 1190 1014 203 20 20 chr12 79317271 79317472 -41940058 - B3 SINE B2 -7 209 9 5 1190 434 368 67 21 chr12 79317726 79318098 -41939432 + L1MA6 LINE L1 7 395 -6773 5 1190 354 45 0 0 chr12 79318276 79318320 -41939210 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1190 1063 298 136 41 chr12 79318555 79319318 -41938212 + L1MA6 LINE L1 1755 2583 -4585 5 1190 1000 132 23 0 chr12 79319318 79319492 -41938038 - Lx3A LINE L1 -4 6977 6800 5 1190 1063 298 136 41 chr12 79319492 79319873 -41937657 + L1MA6 LINE L1 2584 3008 -4160 5 1190 561 297 96 6 chr12 79320052 79320208 -41937322 - B3 SINE B2 -8 208 39 5 1190 371 254 59 109 chr12 79320320 79320541 -41936989 + L1MA6 LINE L1 5134 5343 -1821 5 1190 906 240 89 53 chr12 79320673 79320729 -41936801 + L1MA6 LINE L1 5342 5397 -1764 5 1190 596 225 143 11 chr12 79320729 79320918 -41936612 + B3 SINE B2 1 214 -2 5 1190 1217 200 178 28 chr12 79320918 79321381 -41936149 + L1MA6 LINE L1 5387 5878 -1286 5 1190 288 290 94 24 chr12 79321375 79321502 -41936028 - Lx5 LINE L1 -34 7016 6881 5 1190 618 183 30 95 chr12 79321563 79321715 -41935815 + RSINE1 SINE B4 1 141 -24 5 1190 918 76 0 0 chr12 79321715 79321847 -41935683 + (CA)n Simple_repeat Simple_repeat 1 132 0 5 1190 696 235 103 56 chr12 79321901 79322218 -41935312 + L1MA6 LINE L1 6028 6358 -806 5 1190 1183 62 0 0 chr12 79322218 79322363 -41935167 + B1_Mus2 SINE Alu 3 147 0 5 1190 696 235 103 56 chr12 79322363 79322405 -41935125 + L1MA6 LINE L1 6359 6404 -760 5 1190 437 353 45 13 chr12 79322535 79322690 -41934840 + RSINE1 SINE B4 6 165 0 5 1190 1227 246 185 0 chr12 79322757 79323248 -41934282 + L1MA6 LINE L1 6675 7256 -65 5 1190 1121 256 65 8 chr12 79323574 79323929 -41933601 + MTE2b LTR MaLR 1 375 -4 5 1190 328 267 105 0 chr12 79324088 79324193 -41933337 + MLT1C LTR MaLR 352 467 0 5 1190 681 99 0 19 chr12 79324236 79324339 -41933191 - B1_Mm SINE Alu 0 147 47 5 1190 21 0 0 0 chr12 79324810 79324831 -41932699 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 533 292 259 11 chr12 79325142 79325405 -41932125 - Tigger7 DNA MER2_type -2081 410 83 5 1190 276 298 36 0 chr12 79325471 79325555 -41931975 - Tigger7 DNA MER2_type -2399 92 6 5 1190 325 303 0 0 chr12 79325773 79325849 -41931681 + ID4_ SINE ID 8 83 0 5 1190 450 0 0 0 chr12 79326716 79326766 -41930764 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1190 21 100 0 0 chr12 79328075 79328145 -41929385 + GC_rich Low_complexity Low_complexity 1 70 0 5 1190 612 0 0 0 chr12 79330620 79330688 -41926842 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1190 346 255 102 41 chr12 79330692 79330790 -41926740 - PB1D10 SINE Alu -13 104 1 5 1190 802 162 7 21 chr12 79330852 79330997 -41926533 - B1_Mus2 SINE Alu 0 147 5 5 1190 252 333 36 36 chr12 79331057 79331141 -41926389 + B1F2 SINE Alu 2 85 -64 5 1190 590 285 53 7 chr12 79331624 79331776 -41925754 - RSINE1 SINE B4 -4 161 3 5 1190 315 343 19 0 chr12 79332256 79332364 -41925166 - PB1D10 SINE Alu -7 110 1 5 1190 21 36 0 0 chr12 79332385 79332413 -41925117 + AT_rich Low_complexity Low_complexity 1 28 0 5 1190 259 267 40 0 chr12 79332656 79332731 -41924799 - ID4 SINE ID -1 82 5 5 1190 880 264 33 0 chr12 79332982 79333164 -41924366 - ID_B1 SINE B4 -36 188 1 5 1190 552 256 163 32 chr12 79333265 79333455 -41924075 + B3 SINE B2 2 216 0 5 1190 294 106 0 0 chr12 79333752 79333799 -41923731 + (A)n Simple_repeat Simple_repeat 1 47 0 5 1190 291 302 9 62 chr12 79334157 79334270 -41923260 + Charlie16a DNA MER1_type 124 230 -112 5 1190 745 247 11 11 chr12 79334344 79334524 -41923006 - B3A SINE B2 -18 180 1 5 1190 465 90 0 0 chr12 79334616 79334683 -41922847 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 5 1190 5427 147 84 31 chr12 79334719 79335773 -41921757 - Lx4B LINE L1 -7 7051 5942 5 1190 1162 218 149 57 chr12 79336315 79336646 -41920884 + ORR1D1 LTR MaLR 1 379 0 5 1190 2225 127 3 28 chr12 79337085 79337441 -41920089 + Lx3_Mus LINE L1 6658 7004 -5 5 1190 922 240 5 10 chr12 79337580 79337778 -41919752 + B3A SINE B2 1 197 -1 6 1190 341 303 217 0 chr12 79338319 79338517 -41919013 - MIR SINE MIR -11 251 11 6 1190 6190 60 1 1 chr12 79339023 79339805 -41917725 - L1Md_F2 LINE L1 -13 6569 5788 6 1190 867 171 189 22 chr12 79340051 79340236 -41917294 - B3 SINE B2 0 216 1 6 1190 207 0 0 0 chr12 79340593 79340616 -41916914 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1190 420 322 50 84 chr12 79340946 79341309 -41916221 - L1ME4a LINE L1 -2007 5875 5537 6 1190 1766 147 178 9 chr12 79341791 79342128 -41915402 - ORR1B1 LTR MaLR 0 394 1 6 1190 32 26 0 0 chr12 79342162 79342201 -41915329 + AT_rich Low_complexity Low_complexity 1 39 0 6 1190 461 256 180 79 chr12 79342743 79342921 -41914609 - B4 SINE B4 -16 276 81 6 1190 5884 88 49 25 chr12 79343064 79343968 -41913562 - Lx3C LINE L1 -2 6974 6050 6 1190 214 237 65 48 chr12 79344008 79344070 -41913460 - B4 SINE B4 -228 64 2 6 1190 362 274 17 34 chr12 79344111 79344228 -41913302 - PB1D10 SINE Alu -1 116 2 6 1190 757 296 5 11 chr12 79344294 79344482 -41913048 - MER58A DNA MER1_type -36 188 2 6 1190 300 318 422 62 chr12 79344617 79344892 -41912638 - MLT1F LTR MaLR -201 378 1 6 1190 332 345 51 46 chr12 79345614 79345830 -41911700 - L2c LINE L2 -107 3280 3064 6 1190 210 37 0 0 chr12 79346628 79346655 -41910875 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1190 448 244 95 36 chr12 79346738 79347052 -41910478 - L1MEg LINE L1 -2219 5235 4889 6 1190 238 291 67 10 chr12 79347048 79347152 -41910378 - L1MEg LINE L1 -3429 4025 3916 6 1190 487 301 71 25 chr12 79347181 79347229 -41910301 - L1MEg LINE L1 -3610 3844 3798 6 1190 1230 102 22 6 chr12 79347229 79347407 -41910123 - B2_Mm2 SINE B2 -14 181 1 6 1190 487 296 75 22 chr12 79347407 79347879 -41909651 - L1MEg LINE L1 -3657 3797 3297 6 1190 650 288 59 0 chr12 79348011 79348181 -41909349 - B3A SINE B2 -18 180 1 6 1190 24 32 0 0 chr12 79348183 79348214 -41909316 + AT_rich Low_complexity Low_complexity 1 31 0 6 1190 436 306 131 36 chr12 79348358 79348802 -41908728 - L1MEg LINE L1 -4565 2985 2500 6 1190 444 260 0 0 chr12 79348973 79349069 -41908461 - ID_B1 SINE B4 -25 199 104 6 1190 403 312 28 0 chr12 79349069 79349082 -41908448 - B1F1 SINE Alu -28 121 10 6 1190 27 29 0 0 chr12 79349324 79349358 -41908172 + AT_rich Low_complexity Low_complexity 1 34 0 6 1190 261 0 0 0 chr12 79349545 79349574 -41907956 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1190 285 347 75 9 chr12 79349889 79350116 -41907414 - L1MEg LINE L1 -6154 298 57 6 1190 759 312 78 35 chr12 79350206 79350525 -41907005 - MLT1I LTR MaLR -18 393 61 6 1190 26 82 0 0 chr12 79350584 79350645 -41906885 + AT_rich Low_complexity Low_complexity 1 61 0 6 1190 575 52 0 0 chr12 79350827 79350904 -41906626 + B1_Mus2 SINE Alu 71 147 0 6 1190 228 67 0 0 chr12 79350904 79350934 -41906596 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1190 405 0 0 0 chr12 79351043 79351088 -41906442 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1190 648 353 95 23 chr12 79351150 79351414 -41906116 - B4A SINE B4 0 292 10 6 1190 463 313 186 68 chr12 79351493 79352182 -41905348 + L2 LINE L2 1714 2483 -936 6 1190 841 171 61 87 chr12 79352469 79352699 -41904831 - URR1B DNA MER1_type 0 225 2 6 1190 374 277 192 16 chr12 79353112 79353299 -41904231 - L1MEc LINE L1 -4413 1987 1768 6 1190 984 236 99 27 chr12 79353370 79353484 -41904046 - L1MA6 LINE L1 -8 6292 6160 6 1190 204 40 0 0 chr12 79353484 79353509 -41904021 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 6 1190 984 236 99 27 chr12 79353509 79353768 -41903762 - L1MA6 LINE L1 -141 6159 5893 6 1190 573 242 31 8 chr12 79353777 79353906 -41903624 - RSINE1 SINE B4 -31 134 3 6 1190 495 0 0 0 chr12 79353910 79353965 -41903565 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 6 1190 323 288 85 10 chr12 79353967 79354167 -41903363 - L1MA6 LINE L1 -1167 4976 4762 6 1190 226 290 108 0 chr12 79354212 79354305 -41903225 - L1MEc LINE L1 -4698 1717 1615 6 1190 216 0 0 0 chr12 79354689 79354713 -41902817 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1190 632 200 9 9 chr12 79354713 79354829 -41902701 + B1_Mur1 SINE Alu 33 148 -1 6 1190 312 314 67 8 chr12 79355359 79355478 -41902052 - L1MEc LINE L1 -4899 1516 1391 6 1190 1681 188 20 102 chr12 79355482 79355874 -41901656 - RMER19C LTR ERVK 0 611 252 6 1190 1993 181 168 37 chr12 79355887 79356398 -41901132 + RMER13B LTR ERVK 330 907 -1 6 1190 279 225 14 0 chr12 79358463 79358534 -41898996 - MER34A1 LTR ERV1 -268 319 248 6 1190 1085 225 185 35 chr12 79358528 79358782 -41898748 - MTEb LTR MaLR -19 360 81 6 1190 306 0 0 0 chr12 79358782 79358816 -41898714 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1190 339 78 0 0 chr12 79358816 79358866 -41898664 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1190 1085 225 185 35 chr12 79358866 79358923 -41898607 - MTEb LTR MaLR -299 80 2 6 1190 369 308 21 70 chr12 79358950 79359093 -41898437 - MER34A1 LTR ERV1 -441 146 11 6 1190 779 31 10 0 chr12 79359165 79359263 -41898267 + (TTCTC)n Simple_repeat Simple_repeat 4 102 0 6 1190 928 77 54 0 chr12 79359265 79359395 -41898135 - B1_Mus1 SINE Alu -11 137 1 6 1190 739 181 0 69 chr12 79359528 79359688 -41897842 - B1_Mur3 SINE Alu 0 149 1 6 1190 366 239 205 5 chr12 79359788 79359973 -41897557 - LTR48 LTR ERV1 -37 750 529 6 1190 1252 267 107 26 chr12 79360003 79360472 -41897058 - RMER5 LTR ERV1 -5 529 23 6 1190 2387 77 0 3 chr12 79360604 79360929 -41896601 - L1_Mm LINE L1 -3006 2877 2554 6 1190 3758 29 0 0 chr12 79360927 79361370 -41896160 + L1Md_F2 LINE L1 5144 5586 -297 6 1190 8352 36 0 1 chr12 79361370 79362367 -41895163 + L1Md_F2 LINE L1 5587 6582 0 6 1190 2550 239 140 33 chr12 79362500 79363286 -41894244 + Lx7 LINE L1 6365 7234 -462 6 1190 382 306 31 0 chr12 79363703 79363801 -41893729 - PB1D10 SINE Alu -14 103 3 6 1190 226 241 0 0 chr12 79364125 79364179 -41893351 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 6 1190 253 341 98 0 chr12 79364677 79364759 -41892771 + MIR SINE MIR 43 132 -76 6 1190 21 57 0 0 chr12 79365403 79365438 -41892092 + AT_rich Low_complexity Low_complexity 1 35 0 6 1190 324 318 134 55 chr12 79365876 79366166 -41891364 - L1MCc LINE L1 -6060 363 51 6 1190 269 250 0 0 chr12 79366319 79366375 -41891155 + B4 SINE B4 30 85 -207 6 1190 586 244 8 8 chr12 79366432 79366560 -41890970 + B4A SINE B4 106 233 -59 6 1190 420 291 60 13 chr12 79366618 79366768 -41890762 + B4 SINE B4 73 229 -63 6 1190 389 378 92 43 chr12 79367102 79367470 -41890060 - L1MEc LINE L1 -5993 407 22 6 1190 231 312 35 94 chr12 79367553 79367622 -41889908 - RLTR21 LTR ERVK -323 1249 1152 6 1190 263 254 17 0 chr12 79367622 79367681 -41889849 - B1_Mur2 SINE Alu -56 93 34 6 1190 231 312 35 94 chr12 79367681 79367723 -41889807 - RLTR21 LTR ERVK -323 1151 1090 6 1190 24 32 0 0 chr12 79367821 79367852 -41889678 + AT_rich Low_complexity Low_complexity 1 31 0 6 1190 347 376 101 37 chr12 79368117 79368465 -41889065 - LTR84a LTR ERVL -36 721 352 6 1190 715 269 110 56 chr12 79368534 79368853 -41888677 + RMER13A LTR ERVK 1 336 -524 6 1190 180 0 0 0 chr12 79368920 79368940 -41888590 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 6 1190 3191 147 151 11 chr12 79369674 79370305 -41887225 - RMER6D LTR ERVK 0 720 2 6 1190 363 136 0 0 chr12 79370442 79370501 -41887029 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1190 26 30 0 0 chr12 79371372 79371405 -41886125 + AT_rich Low_complexity Low_complexity 1 33 0 6 1190 225 0 0 0 chr12 79371405 79371430 -41886100 + (CATA)n Simple_repeat Simple_repeat 4 28 0 6 1190 3069 73 2 5 chr12 79371577 79371991 -41885539 + Lx LINE L1 5606 6018 -636 6 1190 1081 121 14 72 chr12 79371991 79372214 -41885316 + Lx3C LINE L1 6766 6975 -1 6 1190 1108 88 0 0 chr12 79372747 79372894 -41884636 + B1_Mm SINE Alu 1 147 0 6 1190 220 260 40 14 chr12 79372953 79373027 -41884503 - L3b LINE CR1 -141 341 266 6 1190 23 0 0 0 chr12 79373138 79373161 -41884369 + AT_rich Low_complexity Low_complexity 1 23 0 6 1190 750 256 128 80 chr12 79373695 79374094 -41883436 - RMER4A LTR ERVK -32 434 17 6 1190 9466 48 6 16 chr12 79374186 79376125 -41881405 - L1Md_F2 LINE L1 0 6582 4666 6 1190 877 126 297 6 chr12 79376385 79376560 -41880970 + URR1A DNA MER1_type 1 226 0 6 1190 365 235 59 0 chr12 79377344 79377446 -41880084 + Lx7 LINE L1 7260 7367 -329 6 1190 1148 205 56 30 chr12 79377519 79377850 -41879680 + Lx7 LINE L1 7270 7649 -47 6 1190 198 0 0 0 chr12 79378094 79378116 -41879414 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1190 22 0 0 0 chr12 79378260 79378282 -41879248 + AT_rich Low_complexity Low_complexity 1 22 0 6 1190 252 274 0 0 chr12 79378558 79378609 -41878921 - AmnSINE1 SINE SINE -415 160 110 6 1190 603 296 9 49 chr12 79379076 79379300 -41878230 + B3 SINE B2 2 216 0 6 1190 972 238 19 19 chr12 79379326 79379532 -41877998 + B3 SINE B2 6 211 -5 6 1190 23 0 0 0 chr12 79379561 79379584 -41877946 + AT_rich Low_complexity Low_complexity 1 23 0 6 1190 221 136 45 0 chr12 79379592 79379636 -41877894 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 6 1190 774 187 246 0 chr12 79379644 79379815 -41877715 + B3 SINE B2 4 216 0 6 1190 309 51 0 0 chr12 79380578 79380617 -41876913 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 6 1190 23 0 0 0 chr12 79380666 79380689 -41876841 + AT_rich Low_complexity Low_complexity 1 23 0 6 1190 2181 153 69 43 chr12 79380703 79381126 -41876404 - RMER6B LTR ERVK -21 440 7 6 1190 21248 136 34 26 chr12 79381141 79383572 -41873958 - Lx2 LINE L1 -5 6992 4537 6 1190 1177 41 7 0 chr12 79383572 79383718 -41873812 - B1_Mus2 SINE Alu 0 147 1 6 1190 21248 175 43 46 chr12 79383718 79384010 -41873520 - Lx2 LINE L1 -1347 4536 4279 6 1190 1205 54 0 0 chr12 79384010 79384157 -41873373 - B1_Mm SINE Alu 0 147 1 6 1190 21248 175 43 46 chr12 79384157 79384578 -41872952 - Lx2 LINE L1 -1605 4278 3852 6 1190 194 0 39 0 chr12 79384578 79384604 -41872926 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1190 21248 167 44 42 chr12 79384604 79387376 -41870154 - Lx2 LINE L1 -2032 3851 1066 6 1190 5475 49 22 0 chr12 79387393 79388082 -41869448 - L1_Mus1 LINE L1 0 6567 5864 6 1190 9020 91 5 56 chr12 79388082 79388704 -41868826 + L1_Mus1 LINE L1 4473 5094 -789 6 1190 2505 78 25 16 chr12 79388704 79389069 -41868461 + L1Md_F2 LINE L1 6214 6581 -1 6 1190 9020 91 5 56 chr12 79389069 79389841 -41867689 + L1_Mus1 LINE L1 5095 5796 -87 6 1190 3447 15 0 2 chr12 79389839 79390237 -41867293 - L1Md_T LINE L1 -257 5626 5230 6 1190 8890 4 0 0 chr12 79390237 79391220 -41866310 + L1Md_T LINE L1 5600 6582 0 6 1190 697 36 0 0 chr12 79391224 79391307 -41866223 + L1_Mus1 LINE L1 5783 5865 -702 6 1190 2042 169 7 47 chr12 79391309 79391718 -41865812 - Lx2 LINE L1 -5597 1060 668 6 1190 671 255 120 46 chr12 79391739 79392003 -41865527 - L1M2 LINE L1 -494 5806 5509 6 1190 1287 122 0 16 chr12 79392003 79392195 -41865335 - B2_Mm2 SINE B2 -5 190 2 6 1190 671 266 15 52 chr12 79392195 79392256 -41865274 - L1M2 LINE L1 -783 5508 5457 6 1190 186 150 0 0 chr12 79392407 79392447 -41865083 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1190 323 402 23 29 chr12 79392462 79392636 -41864894 - B4A SINE B4 -113 179 7 7 1190 492 32 0 0 chr12 79392777 79392839 -41864691 + (TATG)n Simple_repeat Simple_repeat 3 64 0 7 1190 450 103 0 0 chr12 79393122 79393200 -41864330 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 1190 558 249 165 16 chr12 79393255 79393443 -41864087 - B4A SINE B4 -75 217 2 7 1190 4835 59 0 0 chr12 79393450 79394057 -41863473 + L1Md_F2 LINE L1 4980 5586 -297 7 1190 8073 37 17 8 chr12 79394057 79395020 -41862510 + L1Md_F2 LINE L1 5587 6566 -16 7 1190 225 0 0 0 chr12 79395020 79395045 -41862485 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 1190 8073 37 17 8 chr12 79395045 79395056 -41862474 + L1Md_F2 LINE L1 6567 6570 -12 7 1190 1178 48 0 0 chr12 79395056 79395202 -41862328 + B1_Mm SINE Alu 2 147 0 7 1190 368 276 60 24 chr12 79395255 79395422 -41862108 - L1M2 LINE L1 -808 5335 5163 6 1190 874 262 84 3 chr12 79395431 79395776 -41861754 - L1M2 LINE L1 -1120 5023 4651 6 1190 794 194 198 22 chr12 79395778 79395933 -41861597 + MTD LTR MaLR 5 196 -223 7 1190 180 111 0 0 chr12 79395933 79395960 -41861570 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1190 794 194 198 22 chr12 79395960 79396026 -41861504 + MTD LTR MaLR 197 264 -155 7 1190 622 217 150 12 chr12 79396096 79396460 -41861070 - L1M2 LINE L1 -1572 4568 4162 6 1190 2789 185 16 21 chr12 79396578 79397137 -41860393 - Lx4B LINE L1 0 7058 6503 7 1190 14534 139 36 38 chr12 79397137 79397206 -41860324 - L1_Mur1 LINE L1 -562 5315 5233 7 1190 603 0 0 0 chr12 79397206 79397273 -41860257 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 7 1190 14534 139 36 38 chr12 79397273 79400001 -41857529 - L1_Mur1 LINE L1 -645 5232 2524 7 1190 2233 111 116 0 chr12 79400001 79400390 -41857140 - RLTR47_MM LTR ERV1 -98 434 1 7 1190 1467 239 62 32 chr12 79400391 79401028 -41856502 - L1_Mur1 LINE L1 -5406 1251 622 7 1190 1375 263 27 103 chr12 79401202 79401825 -41855705 - L1MA8 LINE L1 -320 5971 5396 7 1190 327 191 0 0 chr12 79401871 79401939 -41855591 + CT-rich Low_complexity Low_complexity 3 70 0 7 1190 558 240 128 30 chr12 79401939 79402244 -41855286 - L1MA8 LINE L1 -786 5357 5023 7 1190 279 343 99 5 chr12 79402747 79402949 -41854581 - LTR84a LTR ERVL -408 349 129 7 1190 252 0 0 0 chr12 79403589 79403617 -41853913 + (CATA)n Simple_repeat Simple_repeat 1 28 0 7 1190 6751 65 8 2 chr12 79403784 79404643 -41852887 - L1_Mus1 LINE L1 -3 6564 5701 7 1190 201 26 51 26 chr12 79404663 79404702 -41852828 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 7 1190 2755 119 14 9 chr12 79404704 79405138 -41852392 - L1Md_F2 LINE L1 0 6582 6147 7 1190 32227 72 5 1 chr12 79405169 79410408 -41847122 + L1Md_F2 LINE L1 329 5586 -297 7 1190 7808 51 7 2 chr12 79410408 79411383 -41846147 + L1Md_F2 LINE L1 5587 6566 -16 7 1190 615 167 0 0 chr12 79412037 79412151 -41845379 + (TA)n Simple_repeat Simple_repeat 1 114 0 7 1190 324 188 0 0 chr12 79412196 79412265 -41845265 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1190 464 260 41 0 chr12 79412751 79412874 -41844656 + B1_Mur1 SINE Alu 2 129 -20 7 1190 207 189 0 0 chr12 79412902 79412955 -41844575 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 7 1190 380 387 41 45 chr12 79413027 79413273 -41844257 + L1M3e LINE L1 1191 1435 -5595 7 1190 3199 217 66 7 chr12 79413383 79414078 -41843452 + Lx9 LINE L1 6603 7338 -306 7 1190 918 251 46 103 chr12 79414093 79414139 -41843391 - MT2B LTR ERVL -7 594 561 7 1190 270 0 0 0 chr12 79414139 79414169 -41843361 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1190 918 251 46 103 chr12 79414169 79414451 -41843079 - MT2B LTR ERVL -41 560 285 7 1190 418 197 90 0 chr12 79414472 79414594 -41842936 + Lx9 LINE L1 7512 7644 0 7 1190 268 232 60 12 chr12 79414613 79414696 -41842834 + Lx8 LINE L1 7357 7443 -30 7 1190 446 332 114 30 chr12 79414756 79414992 -41842538 - LTR33C LTR ERVL -39 590 335 7 1190 474 328 34 43 chr12 79414970 79415177 -41842353 - LTR33C LTR ERVL -420 209 5 7 1190 879 306 132 23 chr12 79415423 79416158 -41841372 - L1ME2z LINE L1 -5 6439 5625 7 1190 646 221 8 8 chr12 79416204 79416332 -41841198 - RSINE1 SINE B4 -33 132 5 7 1190 252 306 0 0 chr12 79416352 79416424 -41841106 - Tigger7 DNA MER2_type -515 1976 1905 7 1190 1932 166 145 23 chr12 79416430 79416905 -41840625 - MT2A LTR ERVL 0 533 1 7 1190 1046 266 100 14 chr12 79417146 79417638 -41839892 - L1M2 LINE L1 -1363 4780 4247 7 1190 32477 79 5 5 chr12 79417800 79422787 -41834743 + L1Md_F2 LINE L1 631 5588 -295 7 1190 7461 73 7 2 chr12 79422790 79423766 -41833764 + L1Md_F2 LINE L1 5592 6572 -10 7 1190 231 308 92 17 chr12 79424352 79424471 -41833059 + L1M2c LINE L1 2143 2270 -4519 7 1190 228 355 0 0 chr12 79424546 79424622 -41832908 + ID_B1 SINE B4 142 217 -7 7 1190 1960 120 6 34 chr12 79425380 79425708 -41831822 + ORR1A2 LTR MaLR 1 319 -8 7 1190 843 287 84 35 chr12 79425753 79426038 -41831492 + MTD LTR MaLR 2 300 -119 7 1190 1638 108 1 0 chr12 79426038 79426275 -41831255 - Lx LINE L1 -500 6154 5915 7 1190 287 250 21 93 chr12 79426281 79426378 -41831152 + MTD LTR MaLR 330 419 0 7 1190 225 154 0 0 chr12 79426463 79426502 -41831028 + T-rich Low_complexity Low_complexity 1 39 0 7 1190 254 303 0 57 chr12 79426561 79426631 -41830899 - ORR1E LTR MaLR -293 66 1 7 1190 7307 90 23 14 chr12 79426800 79427098 -41830432 + Lx LINE L1 5601 5896 -758 7 1190 3314 30 8 0 chr12 79427098 79427491 -41830039 + MTA_Mm LTR MaLR 1 396 0 7 1190 7307 90 23 14 chr12 79427491 79428225 -41829305 + Lx LINE L1 5897 6642 -12 7 1190 312 286 18 0 chr12 79428253 79428340 -41829190 + B3A SINE B2 97 188 -28 7 1190 491 218 7 43 chr12 79428494 79428633 -41828897 - Lx7 LINE L1 0 7696 7563 7 148 2925 234 110 59 chr12 79428862 79429724 -41827806 + RMER1B Other Other 52 957 -109 7 1191 903 224 25 73 chr12 79429805 79430080 -41827450 - RMER19C LTR ERVK -349 262 1 7 1191 4346 157 77 16 chr12 79430080 79431377 -41826153 - L1_Mur3 LINE L1 -4032 1848 459 7 1191 441 0 0 0 chr12 79431377 79431426 -41826104 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1191 4346 168 121 13 chr12 79431426 79431577 -41825953 - L1_Mur3 LINE L1 -7270 458 300 7 1191 233 255 119 30 chr12 79431625 79431685 -41825845 + L1MD2 LINE L1 5875 5945 -414 7 1191 228 67 0 0 chr12 79431685 79431715 -41825815 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 7 1191 233 255 119 30 chr12 79431715 79431755 -41825775 + L1MD2 LINE L1 5946 5984 -375 7 1191 458 10 0 11 chr12 79431950 79432009 -41825521 + Lx2 LINE L1 6720 6779 -218 7 1191 531 316 96 32 chr12 79432119 79432495 -41825035 - L1MC LINE L1 -1007 5139 4740 7 1191 664 195 14 117 chr12 79432712 79432857 -41824673 - B1_Mur2 SINE Alu 0 149 20 7 1191 270 0 0 0 chr12 79433505 79433535 -41823995 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1191 318 319 88 20 chr12 79433905 79434052 -41823478 + HERVL40-int LTR ERVL 3274 3430 -2100 7 1191 23 0 0 0 chr12 79434060 79434083 -41823447 + AT_rich Low_complexity Low_complexity 1 23 0 7 1191 235 80 19 39 chr12 79434339 79434391 -41823139 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1191 16830 53 0 79 chr12 79434755 79437229 -41820301 + L1Md_T LINE L1 3308 5586 -297 7 1191 8350 37 0 0 chr12 79437229 79438225 -41819305 + L1Md_T LINE L1 5587 6582 0 7 1191 9155 59 0 2 chr12 79438226 79439385 -41818145 + L1Md_F2 LINE L1 4430 5586 -297 7 1191 7552 64 8 8 chr12 79439386 79440369 -41817161 + L1Md_F2 LINE L1 5588 6570 -12 7 1191 312 339 5 107 chr12 79440559 79440774 -41816756 + MTD LTR MaLR 8 200 -219 7 1191 301 294 48 7 chr12 79440796 79440910 -41816620 + L1M2 LINE L1 5043 5156 -987 7 1191 198 71 0 0 chr12 79440910 79440938 -41816592 + (CAA)n Simple_repeat Simple_repeat 2 29 0 7 1191 301 294 48 7 chr12 79440938 79440970 -41816560 + L1M2 LINE L1 5157 5194 -949 7 1191 1569 218 81 13 chr12 79441094 79441209 -41816321 + MTD LTR MaLR 1 118 -301 7 1191 306 0 0 0 chr12 79441209 79441243 -41816287 + (TTA)n Simple_repeat Simple_repeat 2 35 0 7 1191 1569 218 81 13 chr12 79441243 79441355 -41816175 + MTD LTR MaLR 119 232 -187 7 1191 3338 114 157 7 chr12 79441355 79441955 -41815575 - RMER6C LTR ERVK 0 690 1 7 1191 1569 218 81 13 chr12 79441955 79442111 -41815419 + MTD LTR MaLR 233 409 -10 7 1191 436 308 16 24 chr12 79442113 79442236 -41815294 + B4A SINE B4 19 140 -152 7 1191 500 139 217 0 chr12 79442247 79442362 -41815168 + B1_Mur4 SINE Alu 11 150 0 7 1191 540 300 8 0 chr12 79442662 79442782 -41814748 + RSINE1 SINE B4 3 123 -42 7 1191 257 212 228 9 chr12 79442827 79442941 -41814589 + L1M2 LINE L1 5319 5457 -846 7 1191 218 125 0 20 chr12 79444544 79444593 -41812937 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1191 246 250 84 74 chr12 79444931 79445026 -41812504 - B1_Mur4 SINE Alu -1 119 24 7 1191 2299 94 97 0 chr12 79445899 79446260 -41811270 - Lx LINE L1 -1 6653 6258 7 1191 18007 158 10 19 chr12 79446326 79447081 -41810449 - L1VL4 LINE L1 -1263 4620 3856 7 1191 243 0 0 0 chr12 79447081 79447108 -41810422 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1191 18007 149 19 15 chr12 79447108 79450740 -41806790 - L1VL4 LINE L1 -2028 3855 356 7 1191 563 0 15 0 chr12 79450740 79450807 -41806723 + (TC)n Simple_repeat Simple_repeat 1 68 0 7 1191 1978 198 74 9 chr12 79450807 79450833 -41806697 - L1VL4 LINE L1 -6230 427 397 7 1191 1491 82 38 9 chr12 79450821 79451031 -41806499 - L1_Mus4 LINE L1 -238 6398 6183 7 1191 429 58 0 0 chr12 79451023 79451075 -41806455 - L1_Mus4 LINE L1 -720 5916 5865 7 1191 2706 16 0 0 chr12 79451855 79452160 -41805370 + LSU-rRNA_Hsa rRNA rRNA 4131 4435 -600 7 1191 492 324 55 22 chr12 79452241 79452424 -41805106 - B3 SINE B2 0 216 28 7 1191 7633 97 5 5 chr12 79452573 79453759 -41803771 - Lx LINE L1 -7 6647 5463 7 1191 3597 148 8 16 chr12 79453744 79454379 -41803151 + L1_Mm LINE L1 4531 5162 -721 7 1191 719 141 7 7 chr12 79454379 79454522 -41803008 + Lx LINE L1 6508 6650 -4 7 1191 452 348 13 6 chr12 79454604 79454763 -41802767 + RSINE1 SINE B4 2 161 -4 7 1191 383 256 12 0 chr12 79454795 79454881 -41802649 - B1_Mus2 SINE Alu -60 87 1 7 1191 485 167 10 0 chr12 79454996 79455092 -41802438 + Lx2B LINE L1 3825 3921 -1956 7 1191 950 99 0 21 chr12 79455094 79455239 -41802291 + B2_Mm2 SINE B2 6 147 -48 7 1191 6807 148 33 24 chr12 79455269 79457345 -41800185 + Lx2B LINE L1 4540 6658 -342 7 1191 372 198 0 11 chr12 79457348 79457440 -41800090 + Lx2B LINE L1 6910 7000 0 7 1191 3579 155 74 3 chr12 79457604 79458237 -41799293 + RLTR33 LTR ERVK 1 678 0 7 1191 301 278 50 56 chr12 79458312 79458472 -41799058 - L1MB8 LINE L1 -2 6176 6018 7 1191 426 246 139 28 chr12 79458510 79458690 -41798840 + Lx7 LINE L1 7480 7679 -17 7 1191 991 122 23 0 chr12 79458963 79459135 -41798395 - Lx2 LINE L1 -7 6990 6815 7 1191 233 205 88 25 chr12 79459544 79459624 -41797906 + Zaphod2 DNA Tip100 2063 2147 -1377 7 1191 207 88 0 0 chr12 79459777 79459811 -41797719 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 1191 261 0 0 0 chr12 79459920 79459949 -41797581 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 7 1191 619 215 15 15 chr12 79459952 79460084 -41797446 - B1_Mur3 SINE Alu -17 132 1 7 1191 300 111 0 0 chr12 79460092 79460137 -41797393 + (TTG)n Simple_repeat Simple_repeat 3 47 0 7 1191 324 64 0 0 chr12 79460253 79460300 -41797230 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1191 271 296 14 132 chr12 79460515 79460659 -41796871 + L2 LINE L2 2750 2876 -543 7 1191 362 162 342 0 chr12 79461219 79461336 -41796194 + ID_B1 SINE B4 5 161 -63 7 1191 273 247 82 0 chr12 79461280 79461353 -41796177 + PB1D10 SINE Alu 21 99 -18 8 1191 1024 233 141 89 chr12 79461510 79461858 -41795672 - MTE2b LTR MaLR -13 366 1 8 1191 183 42 0 0 chr12 79463081 79463105 -41794425 + (TTA)n Simple_repeat Simple_repeat 1 24 0 8 1191 355 277 0 10 chr12 79463106 79463208 -41794322 - Lx7 LINE L1 -24 7672 7572 8 1191 2032 232 185 19 chr12 79463204 79463908 -41793622 - Lx7 LINE L1 -1137 6559 5739 8 1191 276 30 0 0 chr12 79463913 79463946 -41793584 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1191 301 276 104 0 chr12 79464113 79464247 -41793283 - Lx7 LINE L1 -6883 845 698 8 1191 1278 14 0 0 chr12 79464504 79464651 -41792879 + B1_Mus2 SINE Alu 1 147 0 8 1191 249 98 0 0 chr12 79464653 79464694 -41792836 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1191 1205 135 51 0 chr12 79465370 79465585 -41791945 + Lx2 LINE L1 6772 6997 0 8 1191 4163 90 42 2 chr12 79465585 79466184 -41791346 - Lx3_Mus LINE L1 -380 6629 6007 8 1191 1764 164 47 3 chr12 79466185 79466484 -41791046 - ORR1C1 LTR MaLR -51 327 16 8 1191 7788 92 4 1 chr12 79466490 79468238 -41789292 - L1_Mus3 LINE L1 -6 6632 4878 8 1191 970 90 0 7 chr12 79468238 79468373 -41789157 + L1_Mus3 LINE L1 4719 4852 -1031 8 1191 3216 86 3 3 chr12 79468372 79468895 -41788635 - Lx3_Mus LINE L1 -977 6032 5513 8 1191 3092 65 21 2 chr12 79468895 79469313 -41788217 + Lx3_Mus LINE L1 6584 7009 0 8 1191 212 213 21 0 chr12 79469347 79469394 -41788136 + GA-rich Low_complexity Low_complexity 2 49 0 8 1191 201 288 17 0 chr12 79469971 79470030 -41787500 + CT-rich Low_complexity Low_complexity 5 64 0 8 1191 207 0 0 0 chr12 79470156 79470179 -41787351 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1191 602 235 32 13 chr12 79470213 79470368 -41787162 + RSINE1 SINE B4 4 161 -4 8 1191 4345 50 7 4 chr12 79470937 79471520 -41786010 - L1Md_F2 LINE L1 0 6582 6036 8 1191 28482 38 3 9 chr12 79471520 79475634 -41781896 - L1Md_F2 LINE L1 -1141 4742 660 8 1191 378 91 0 0 chr12 79475749 79475804 -41781726 + (TATG)n Simple_repeat Simple_repeat 2 56 0 8 1191 713 194 32 0 chr12 79475861 79475985 -41781545 - B1_Mus2 SINE Alu -19 128 1 8 1191 240 238 0 59 chr12 79476073 79476158 -41781372 - Lx8 LINE L1 -1 7472 7393 8 1191 329 390 14 0 chr12 79476157 79476298 -41781232 - Lx8 LINE L1 -215 7258 7116 8 1191 354 272 11 65 chr12 79476828 79477013 -41780517 + L1MC3 LINE L1 7604 7778 -7 8 1191 1286 215 32 4 chr12 79477697 79477945 -41779585 - Lx4A LINE L1 -1 7057 6803 8 1191 2816 179 15 11 chr12 79478210 79478741 -41778789 - RLTR22_Mur LTR ERVK -1315 533 1 8 1191 25 0 0 0 chr12 79479167 79479192 -41778338 + AT_rich Low_complexity Low_complexity 1 25 0 8 1191 207 0 0 0 chr12 79479217 79479240 -41778290 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1191 1030 107 0 0 chr12 79479240 79479380 -41778150 - B1_Mus1 SINE Alu -8 140 1 8 1191 664 218 0 26 chr12 79479380 79479530 -41778000 - B1_Mur3 SINE Alu -2 147 1 8 1191 239 271 13 67 chr12 79480413 79480488 -41777042 - RLTR9A LTR ERVK -140 228 158 8 1191 1043 258 51 13 chr12 79480681 79480995 -41776535 + Lx9 LINE L1 7169 7494 -150 8 1191 378 236 96 41 chr12 79481118 79481264 -41776266 + L1MDb LINE L1 1060 1213 -5196 8 1191 2006 70 4 18 chr12 79481724 79481999 -41775531 - L1_Mus2 LINE L1 0 6566 6296 8 1191 3899 46 2 0 chr12 79482664 79483143 -41774387 + L1_Mus1 LINE L1 5595 6074 -493 8 1191 21427 131 24 26 chr12 79483165 79487533 -41769997 + L1_Mus2 LINE L1 220 4613 -1270 8 1191 955 57 0 0 chr12 79487527 79487649 -41769881 - L1_Mm LINE L1 -785 5098 4977 8 1191 7412 81 2 2 chr12 79487647 79488704 -41768826 + L1_Mus2 LINE L1 5506 6562 -4 8 1191 2933 25 41 0 chr12 79488761 79489124 -41768406 + MTA_Mm LTR MaLR 1 378 -18 8 1191 331 330 10 10 chr12 79489155 79489253 -41768277 - RSINE1 SINE B4 -65 100 3 8 1191 1368 129 31 0 chr12 79490321 79490546 -41766984 - Lx2 LINE L1 0 6997 6766 8 1191 263 350 98 14 chr12 79490699 79491128 -41766402 + L1MDa LINE L1 1920 2384 -4249 8 1191 252 281 76 30 chr12 79491220 79491303 -41766227 + L1MDa LINE L1 2510 2600 -3937 8 1191 2122 108 34 14 chr12 79491303 79491317 -41766213 - L1_Mus3 LINE L1 -19 6619 6608 8 1191 492 18 0 0 chr12 79491317 79491374 -41766156 + (TA)n Simple_repeat Simple_repeat 2 58 0 8 1191 2122 108 34 14 chr12 79491374 79491708 -41765822 - L1_Mus3 LINE L1 -31 6607 6264 8 1191 252 281 76 30 chr12 79491708 79491822 -41765708 + L1MDa LINE L1 2601 2716 -3821 8 1191 3473 111 30 0 chr12 79491826 79492329 -41765201 + L1VL4 LINE L1 191 708 -5594 8 1191 4257 87 8 0 chr12 79492325 79492934 -41764596 + MusHAL1 LINE L1 1240 1853 -859 8 1191 693 0 0 0 chr12 79493021 79493098 -41764432 + (TTTCC)n Simple_repeat Simple_repeat 2 78 0 8 1191 585 150 0 0 chr12 79493119 79493219 -41764311 + (TA)n Simple_repeat Simple_repeat 2 101 0 8 1191 337 335 89 25 chr12 79493369 79493571 -41763959 + L1MD2 LINE L1 6123 6337 -22 8 1191 23 54 0 0 chr12 79493595 79493632 -41763898 + AT_rich Low_complexity Low_complexity 1 37 0 8 1191 215 93 0 23 chr12 79493837 79493881 -41763649 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 8 1191 459 386 91 11 chr12 79493945 79494396 -41763134 + L1M4b LINE L1 19 505 -6829 8 1191 2233 68 3 0 chr12 79494416 79494709 -41762821 - L1_Mus1 LINE L1 -14 6553 6260 8 1191 548 312 143 16 chr12 79494795 79495117 -41762413 + L1M4b LINE L1 684 1046 -6288 8 1191 527 304 22 0 chr12 79495125 79495260 -41762270 + B3A SINE B2 6 143 -55 8 1191 509 315 40 55 chr12 79495345 79495745 -41761785 + L1M4b LINE L1 1061 1454 -5880 8 1191 439 350 42 56 chr12 79495826 79496113 -41761417 - MLT2B1 LTR ERVL -2 518 236 8 1191 317 250 105 38 chr12 79496160 79496293 -41761237 + L1M4b LINE L1 1621 1762 -5142 8 1191 317 261 9 18 chr12 79496307 79496420 -41761110 + L1_Mur3 LINE L1 4132 4243 -1637 8 1191 217 394 0 0 chr12 79496462 79496533 -41760997 + RSINE1 SINE B4 78 148 -17 8 1191 371 319 21 35 chr12 79496617 79496760 -41760770 + ID_B1 SINE B4 78 218 -6 8 1191 684 161 8 41 chr12 79496648 79496771 -41760759 + B1_Mus1 SINE Alu 30 148 0 8 1191 247 157 0 38 chr12 79496777 79496830 -41760700 + L1_Rod LINE L1 5531 5581 -266 8 1191 307 288 53 8 chr12 79497085 79497218 -41760312 - L1M5 LINE L1 -396 5777 5639 8 1191 226 302 34 0 chr12 79497382 79497501 -41760029 - L1M5 LINE L1 -747 5399 5277 8 1191 23 68 0 0 chr12 79497695 79497739 -41759791 + AT_rich Low_complexity Low_complexity 1 44 0 8 1191 931 80 20 7 chr12 79498216 79498367 -41759163 - L1_Mus3 LINE L1 -6 6632 6480 8 1191 280 292 97 49 chr12 79498818 79498962 -41758568 - MER5A1 DNA MER1_type -13 153 3 8 1191 678 222 7 15 chr12 79499079 79499216 -41758314 + B1_Mus1 SINE Alu 5 140 -8 8 1191 1078 179 59 101 chr12 79499329 79499684 -41757846 - Lx7 LINE L1 -2 7694 7355 8 1191 582 15 0 0 chr12 79499749 79499816 -41757714 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 8 1191 1210 79 43 0 chr12 79499822 79499986 -41757544 - B2_Mm2 SINE B2 -15 180 10 8 1191 3782 178 24 17 chr12 79500028 79500773 -41756757 - Lx3C LINE L1 -2 6974 6225 1 1191 4697 154 59 2 chr12 79500774 79501655 -41755875 + L1_Mur1 LINE L1 2681 3611 -2275 2 1191 397 235 43 17 chr12 79501654 79501771 -41755759 - Lx7 LINE L1 -387 7309 7190 3 1191 2011 117 25 9 chr12 79501773 79502100 -41755430 - RMER16 LTR ERVK 0 533 202 4 1191 5863 91 29 6 chr12 79502100 79502976 -41754554 - L1_Mus4 LINE L1 0 6636 5769 5 1191 265 228 0 17 chr12 79502976 79503034 -41754496 + L1_Mm LINE L1 5559 5615 -268 6 1191 4664 97 0 0 chr12 79503023 79503661 -41753869 + L1_Mm LINE L1 5059 5696 -187 7 1191 670 144 60 60 chr12 79503661 79503794 -41753736 - RMER16 LTR ERVK -400 133 1 4 1191 3763 231 92 15 chr12 79503802 79504741 -41752789 - Lx7 LINE L1 -511 7185 6175 3 1191 399 123 0 0 chr12 79504741 79504822 -41752708 + (TATG)n Simple_repeat Simple_repeat 1 81 0 8 1191 373 214 12 0 chr12 79504824 79504908 -41752622 - Lx7 LINE L1 -1509 6187 6103 3 1191 207 0 0 0 chr12 79504916 79504939 -41752591 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1191 1122 202 172 103 chr12 79504949 79505357 -41752173 - RMER6B LTR ERVK -25 436 1 1 1191 1020 258 64 21 chr12 79505357 79505430 -41752100 - Lx7 LINE L1 -1590 6106 6031 3 1191 525 58 0 0 chr12 79505430 79505499 -41752031 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1191 1020 258 64 21 chr12 79505499 79505798 -41751732 - Lx7 LINE L1 -1666 6030 5719 3 1191 5101 95 46 10 chr12 79505861 79506658 -41750872 - Lx3_Mus LINE L1 0 7009 6184 1 1191 2472 167 22 0 chr12 79506659 79507113 -41750417 - Lx7 LINE L1 -771 5109 4646 3 1191 2822 12 0 0 chr12 79507115 79507437 -41750093 - RLTRETN_Mm LTR ERVK 0 322 1 1 1191 40157 30 7 17 chr12 79507437 79512331 -41745199 - MMETn-int LTR ERVK 0 4844 1 1 1191 2683 28 6 0 chr12 79512331 79512651 -41744879 - RLTRETN_Mm LTR ERVK 0 322 1 1 1191 251 104 21 0 chr12 79513512 79513560 -41743970 + (TTAAA)n Simple_repeat Simple_repeat 1 49 0 1 1191 35 63 0 0 chr12 79513564 79513627 -41743903 + AT_rich Low_complexity Low_complexity 1 63 0 1 1191 23 0 0 0 chr12 79514597 79514620 -41742910 + AT_rich Low_complexity Low_complexity 1 23 0 1 1191 310 324 118 89 chr12 79515187 79515458 -41742072 - MER21B LTR ERV1 -74 789 511 1 1191 318 355 88 47 chr12 79515656 79515848 -41741682 - MER21B LTR ERV1 -657 206 7 1 1191 385 310 28 44 chr12 79515939 79516095 -41741435 - B3A SINE B2 0 216 59 1 1191 1012 262 64 38 chr12 79520508 79520774 -41736756 + B4A SINE B4 2 274 -18 1 1191 188 135 27 0 chr12 79520798 79520835 -41736695 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 2 1191 546 284 57 71 chr12 79521525 79521821 -41735709 + B4A SINE B4 1 292 0 2 1191 827 308 42 78 chr12 79522786 79522905 -41734625 + Lx8 LINE L1 7034 7150 -323 2 1191 2764 67 70 0 chr12 79522905 79523279 -41734251 - MTB LTR MaLR 0 400 1 2 1191 827 308 42 78 chr12 79523279 79523610 -41733920 + Lx8 LINE L1 7151 7468 -5 2 1191 299 164 16 0 chr12 79523607 79523668 -41733862 - L1_Mur1 LINE L1 -839 5047 4986 2 1191 228 291 86 19 chr12 79524138 79524243 -41733287 - MLT1A1 LTR MaLR -2 406 295 2 1191 970 79 112 7 chr12 79524277 79524429 -41733101 + B2_Mm2 SINE B2 1 168 -27 2 1191 747 28 0 9 chr12 79524488 79524597 -41732933 + L1Md_F2 LINE L1 6474 6581 -1 2 1191 327 273 78 0 chr12 79524977 79525054 -41732476 - PB1 SINE Alu -30 97 15 2 1191 281 296 222 19 chr12 79525782 79525944 -41731586 + B3A SINE B2 3 197 -1 2 1191 4592 65 2 36 chr12 79526611 79527247 -41730283 - L1Md_F2 LINE L1 -10 6572 5959 3 1191 720 194 20 5 chr12 79527740 79527940 -41729590 + L1M3b LINE L1 1706 1963 -4121 3 1191 26118 122 27 5 chr12 79528128 79532089 -41725441 + L1_Mus2 LINE L1 1612 5677 -206 3 1191 2593 86 3 6 chr12 79532089 79532453 -41725077 - L1Md_F2 LINE L1 -7 6575 6213 3 1191 26118 71 7 12 chr12 79532453 79533346 -41724184 + L1_Mus2 LINE L1 5678 6566 0 3 1191 6772 97 77 0 chr12 79533361 79534713 -41722817 + L1_Mus3 LINE L1 5162 6632 -6 3 1191 232 303 93 43 chr12 79535001 79535163 -41722367 - L2a LINE L2 -160 3266 3097 3 1191 315 256 115 0 chr12 79535361 79535439 -41722091 - PB1D9 SINE Alu -32 88 2 3 1191 21 0 0 0 chr12 79537466 79537487 -41720043 + AT_rich Low_complexity Low_complexity 1 21 0 3 1191 22 56 0 0 chr12 79537887 79537923 -41719607 + AT_rich Low_complexity Low_complexity 1 36 0 3 1191 687 217 0 0 chr12 79538045 79538202 -41719328 + (TA)n Simple_repeat Simple_repeat 1 157 0 3 1191 367 215 121 57 chr12 79538206 79538284 -41719246 + B1_Mur2 SINE Alu 29 98 -51 4 1191 180 0 0 0 chr12 79538284 79538304 -41719226 + (CAGGC)n Simple_repeat Simple_repeat 3 22 0 4 1191 367 206 124 52 chr12 79538304 79538336 -41719194 + B1_Mur2 SINE Alu 99 141 -8 4 1191 482 16 32 0 chr12 79538448 79538510 -41719020 + (TATG)n Simple_repeat Simple_repeat 3 66 0 4 1191 744 250 144 11 chr12 79538527 79538798 -41718732 - L1MB4 LINE L1 -190 5990 5684 4 1191 348 128 51 13 chr12 79538983 79539001 -41718529 + L1_Mus3 LINE L1 6557 6578 -60 4 1191 792 184 15 0 chr12 79539001 79539137 -41718393 + B1_Mur3 SINE Alu 4 141 -8 4 1191 348 128 51 13 chr12 79539137 79539197 -41718333 + L1_Mus3 LINE L1 6579 6638 0 4 1191 1230 195 85 44 chr12 79539566 79539882 -41717648 - Lx7 LINE L1 0 7696 7368 4 1191 192 200 0 0 chr12 79539902 79539947 -41717583 + (TATG)n Simple_repeat Simple_repeat 4 48 0 4 1191 493 221 97 27 chr12 79539959 79540175 -41717355 - Lx7 LINE L1 -328 7368 7048 4 1191 421 328 111 24 chr12 79540592 79540845 -41716685 + B4A SINE B4 2 276 -16 4 1191 303 28 0 0 chr12 79540865 79540901 -41716629 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1191 685 243 188 0 chr12 79541032 79541320 -41716210 - Lx7 LINE L1 0 7696 7355 5 1191 1352 61 39 0 chr12 79541329 79541510 -41716020 + B2_Mm2 SINE B2 1 188 -7 5 1191 691 259 77 10 chr12 79542015 79542222 -41715308 - ID_B1 SINE B4 -3 221 1 5 1191 1173 97 40 0 chr12 79542631 79542806 -41714724 - B2_Mm2 SINE B2 -8 187 6 5 1191 263 203 14 14 chr12 79543679 79543749 -41713781 + T-rich Low_complexity Low_complexity 6 75 0 5 1191 868 162 14 0 chr12 79543749 79543897 -41713633 - B1_Mur4 SINE Alu 0 150 1 5 1191 22 35 0 0 chr12 79543899 79543928 -41713602 + AT_rich Low_complexity Low_complexity 1 29 0 5 1191 554 216 154 93 chr12 79544780 79545060 -41712470 + RMER10A LTR ERVL 1 297 -145 5 1191 234 239 27 27 chr12 79545061 79545134 -41712396 + CT-rich Low_complexity Low_complexity 4 76 0 5 1191 24 67 0 0 chr12 79545429 79545474 -41712056 + AT_rich Low_complexity Low_complexity 1 45 0 5 1191 700 282 28 76 chr12 79545607 79545818 -41711712 + B4 SINE B4 2 202 -90 6 1191 273 284 11 54 chr12 79546370 79546463 -41711067 + B4 SINE B4 196 284 -8 6 1191 25 65 0 0 chr12 79546791 79546837 -41710693 + AT_rich Low_complexity Low_complexity 1 46 0 6 1191 5155 104 1 33 chr12 79547959 79548746 -41708784 - Lx LINE L1 -8 6646 5885 6 1191 336 368 22 9 chr12 79549772 79550002 -41707528 - Lx9 LINE L1 -212 7432 7200 6 1191 3810 134 56 11 chr12 79550216 79550911 -41706619 - Lx3B LINE L1 -4 6969 6244 6 1191 802 247 114 43 chr12 79550990 79551358 -41706172 - Lx9 LINE L1 -23 7621 7228 6 1191 576 254 45 84 chr12 79551607 79551810 -41705720 - B3A SINE B2 0 216 22 6 1191 249 33 0 0 chr12 79553142 79553172 -41704358 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1191 275 333 92 74 chr12 79553530 79553747 -41703783 - MLT1A1 LTR MaLR -181 227 7 6 1191 507 289 48 11 chr12 79554585 79554774 -41702756 + Tigger1 DNA MER2_type 1 196 -2222 6 1191 787 250 148 0 chr12 79554784 79555040 -41702490 + Tigger1 DNA MER2_type 2120 2413 -5 6 1191 286 305 12 0 chr12 79555323 79555405 -41702125 + BC1_Mm scRNA scRNA 15 97 -55 7 1191 32 0 0 0 chr12 79556343 79556375 -41701155 + AT_rich Low_complexity Low_complexity 1 32 0 7 1191 2009 325 94 18 chr12 79556981 79557938 -41699592 - Lx8 LINE L1 -184 7289 6260 7 1191 3027 81 36 11 chr12 79558121 79558568 -41698962 - Lx3_Mus LINE L1 0 7009 6552 7 1191 5962 72 9 3 chr12 79558568 79559538 -41697992 + Lx3_Mus LINE L1 5081 6052 -957 7 1191 632 314 46 53 chr12 79559797 79560234 -41697296 - L1MEf LINE L1 -4699 1501 1068 7 1191 3499 38 2 5 chr12 79560247 79560674 -41696856 + L1Md_F2 LINE L1 6152 6577 -5 7 1192 1967 121 3 0 chr12 79560811 79561101 -41696429 + Lx2 LINE L1 6073 6363 -634 7 1192 419 338 41 16 chr12 79561230 79561474 -41696056 - L1MEf LINE L1 -5398 802 553 7 1192 1018 263 68 0 chr12 79561510 79561761 -41695769 + ORR1D2 LTR MaLR 1 268 -102 7 1192 311 325 8 24 chr12 79561776 79561902 -41695628 - L1MEf LINE L1 -5763 437 314 7 1192 558 43 0 0 chr12 79561999 79562068 -41695462 + (TAAA)n Simple_repeat Simple_repeat 3 71 0 7 1192 269 307 0 13 chr12 79562445 79562521 -41695009 + tRNA-Lys-AAG tRNA tRNA 2 76 0 8 1192 362 313 30 120 chr12 79562525 79562826 -41694704 - RLTR12B LTR ERVK -14 514 241 8 1192 204 233 0 0 chr12 79562826 79562869 -41694661 + CT-rich Low_complexity Low_complexity 1 43 0 8 1192 698 247 79 50 chr12 79562869 79563138 -41694392 - RLTR12B LTR ERVK -230 298 2 8 1192 39059 30 4 6 chr12 79563339 79569515 -41688015 - L1Md_T LINE L1 -1 6581 422 8 1192 674 238 121 6 chr12 79569659 79569832 -41687698 + B3 SINE B2 18 210 -6 8 1192 822 166 7 33 chr12 79569923 79570073 -41687457 + B1_Mur4 SINE Alu 3 148 -2 8 1192 25 0 0 0 chr12 79570136 79570161 -41687369 + AT_rich Low_complexity Low_complexity 1 25 0 8 1192 919 158 0 0 chr12 79570412 79570545 -41686985 - B1_Mur3 SINE Alu -8 141 9 8 1192 241 309 144 33 chr12 79570683 79570864 -41686666 + L1M4c LINE L1 489 689 -5695 8 1192 1946 208 17 31 chr12 79570914 79571336 -41686194 - Lx2A1 LINE L1 -481 6527 6112 9 1192 2265 96 3 3 chr12 79571336 79571659 -41685871 - L1_Mus4 LINE L1 -4 6632 6310 9 1192 288 204 0 0 chr12 79571681 79571730 -41685800 - B3 SINE B2 -167 49 1 9 1192 1613 210 54 86 chr12 79571764 79572094 -41685436 - MTD LTR MaLR -5 414 99 9 1192 1092 68 7 0 chr12 79572094 79572241 -41685289 - B1_Mus1 SINE Alu 0 148 1 9 1192 1613 210 54 86 chr12 79572241 79572338 -41685192 - MTD LTR MaLR -321 98 1 9 1192 613 312 52 56 chr12 79572531 79572819 -41684711 - B4 SINE B4 -5 287 1 9 1192 438 288 130 23 chr12 79572910 79573209 -41684321 - L1MD LINE L1 -3246 2900 2570 9 1192 787 280 87 21 chr12 79573252 79573515 -41684015 + L1MC2 LINE L1 5637 5915 -429 9 1192 306 0 0 0 chr12 79573515 79573549 -41683981 + (TTA)n Simple_repeat Simple_repeat 3 36 0 9 1192 787 280 87 21 chr12 79573549 79573665 -41683865 + L1MC2 LINE L1 5916 6040 -304 9 1192 2088 108 25 0 chr12 79573694 79574009 -41683521 - MTB LTR MaLR -77 323 1 9 1192 230 211 113 0 chr12 79574296 79574367 -41683163 + L1MC2 LINE L1 6069 6147 -1638 9 1192 1736 134 3 43 chr12 79574391 79574694 -41682836 + Lx LINE L1 6360 6650 -4 1 1192 1275 198 86 3 chr12 79574732 79575057 -41682473 - Lx9 LINE L1 -10 7634 7283 1 1192 2801 131 58 8 chr12 79575090 79575558 -41681972 - Lx3_Mus LINE L1 -7 6974 6484 1 1192 4989 68 35 42 chr12 79575556 79576684 -41680846 - Lx3_Mus LINE L1 -660 6349 5235 1 1192 1462 98 36 0 chr12 79576681 79576905 -41680625 + L1_Mur1 LINE L1 2258 2489 -3397 1 1192 189 0 0 0 chr12 79577043 79577064 -41680466 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1192 760 200 28 14 chr12 79577185 79577327 -41680203 - B1_Mur4 SINE Alu -5 145 2 1 1192 392 271 22 8 chr12 79577328 79577462 -41680068 - Lx9 LINE L1 -12 7632 7497 1 1192 813 266 89 4 chr12 79577473 79577730 -41679800 - Lx9 LINE L1 -207 7437 7159 1 1192 263 365 0 40 chr12 79578437 79578537 -41678993 + B4A SINE B4 196 291 -1 1 1192 1950 137 38 13 chr12 79578817 79579135 -41678395 - ORR1A3 LTR MaLR 0 326 1 1 1192 6993 143 50 6 chr12 79579135 79580212 -41677318 - ORR1A3-int LTR MaLR 0 1963 677 1 1192 677 210 40 225 chr12 79580212 79580368 -41677162 - MT2B LTR ERVL -332 269 112 1 1192 1019 84 28 0 chr12 79580368 79580511 -41677019 + B1_Mm SINE Alu 1 147 0 1 1192 677 210 40 225 chr12 79580511 79580630 -41676900 - MT2B LTR ERVL -490 111 45 1 1192 1075 146 135 5 chr12 79580622 79580815 -41676715 + ORR1A1-int LTR MaLR 169 386 -1577 1 1192 841 206 30 9 chr12 79580827 79581035 -41676495 - Lx3C LINE L1 -12 6961 6752 1 1192 860 162 0 25 chr12 79581035 79581193 -41676337 + ORR1A1-int LTR MaLR 372 525 -1438 1 1192 908 244 5 23 chr12 79581195 79581413 -41676117 + ORR1A1 LTR MaLR 1 214 -132 1 1192 879 107 100 0 chr12 79581371 79581521 -41676009 - ORR1A3-int LTR MaLR -1798 165 1 1 1192 649 152 106 18 chr12 79581521 79581680 -41675850 - ORR1A2 LTR MaLR -54 324 152 1 1192 326 309 51 32 chr12 79582535 79582692 -41674838 - MER77 LTR ERVL -44 563 404 1 1192 394 278 156 34 chr12 79582718 79582897 -41674633 - MER77 LTR ERVL -349 258 58 1 1192 1760 181 59 56 chr12 79583446 79583881 -41673649 - RMER6C LTR ERVK 0 690 252 1 1192 3782 142 15 21 chr12 79583881 79584535 -41672995 - Lx3B LINE L1 -4 6969 6320 1 1192 1760 221 56 1197 chr12 79584535 79584616 -41672914 - RMER6C LTR ERVK -439 251 153 1 1192 402 83 0 0 chr12 79584616 79584676 -41672854 - Lx3C LINE L1 -1041 5935 5876 1 1192 1190 78 268 44 chr12 79584676 79584904 -41672626 - RMER6C LTR ERVK -411 279 1 1 1192 277 292 94 14 chr12 79584994 79585206 -41672324 - MER21-int LTR ERV1 -141 4050 3822 1 1192 315 312 74 74 chr12 79585222 79585327 -41672203 + RMER30 DNA MER1_type 9 114 -88 1 1192 4600 29 3 28 chr12 79585327 79585895 -41671635 + L1_Mus1 LINE L1 6014 6567 0 1 1192 315 312 74 74 chr12 79585895 79585979 -41671551 + RMER30 DNA MER1_type 115 198 -4 1 1192 390 311 95 70 chr12 79585986 79586259 -41671271 - MER21-int LTR ERV1 -433 3758 3479 1 1192 405 88 18 0 chr12 79586524 79586581 -41670949 - RMER12 LTR ERVK -548 774 717 1 1192 724 323 52 36 chr12 79586642 79587005 -41670525 - MER21-int LTR ERV1 -1297 2894 2526 1 1192 463 278 162 38 chr12 79587179 79587444 -41670086 - MER77 LTR ERVL -6 601 304 1 1192 966 142 7 7 chr12 79587631 79587780 -41669750 - B1_Mur3 SINE Alu 0 149 1 1 1192 1505 165 16 153 chr12 79588143 79588529 -41669001 - Lx4A LINE L1 -3 7055 6723 1 1192 5742 148 74 2 chr12 79588526 79589702 -41667828 - Lx4A LINE L1 -1 6999 5736 1 1192 13279 55 9 1 chr12 79589756 79591445 -41666085 + L1Md_F2 LINE L1 3884 5586 -297 1 1192 8327 33 0 2 chr12 79591445 79592455 -41665075 + L1Md_F2 LINE L1 5587 6582 0 1 1192 856 129 14 28 chr12 79592746 79592890 -41664640 + B1_Mur4 SINE Alu 3 144 -6 1 1192 378 151 0 0 chr12 79592938 79593011 -41664519 + T-rich Low_complexity Low_complexity 1 73 0 1 1192 37 39 0 0 chr12 79593864 79593915 -41663615 + AT_rich Low_complexity Low_complexity 1 51 0 1 1192 225 0 0 0 chr12 79595311 79595336 -41662194 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1192 29 0 0 0 chr12 79595617 79595646 -41661884 + AT_rich Low_complexity Low_complexity 1 29 0 1 1192 2451 188 18 53 chr12 79595849 79596244 -41661286 - Lx2B LINE L1 -4 6996 6613 1 1192 5715 43 0 0 chr12 79596244 79596934 -41660596 - L1Md_T LINE L1 0 6582 5893 1 1192 2451 188 18 53 chr12 79596934 79597088 -41660442 - Lx2B LINE L1 -388 6612 6466 1 1192 945 130 52 7 chr12 79597086 79597241 -41660289 + Lx2B LINE L1 6322 6483 -517 1 1192 712 273 39 13 chr12 79597648 79597852 -41659678 + B3A SINE B2 2 213 -3 1 1192 259 231 152 11 chr12 79597880 79597972 -41659558 - MER105 DNA DNA -46 158 54 1 1192 591 181 71 67 chr12 79599175 79599400 -41658130 - Lx7 LINE L1 -107 7589 7364 1 1192 3393 219 65 30 chr12 79599440 79600254 -41657276 - Lx7 LINE L1 -1242 6454 5612 1 1192 593 156 35 7 chr12 79600270 79600412 -41657118 - Lx7 LINE L1 -508 5372 5227 1 1192 1214 244 87 3 chr12 79600441 79600741 -41656789 - Lx3C LINE L1 -6 6970 6646 1 1192 1521 187 14 84 chr12 79600759 79601127 -41656403 - Lx7 LINE L1 -657 5223 4882 1 1192 7522 193 76 20 chr12 79601127 79602540 -41654990 - Lx7 LINE L1 -2659 3221 1752 1 1192 3383 28 5 0 chr12 79602540 79602934 -41654596 - MTA_Mm LTR MaLR 0 396 1 1 1192 7522 223 57 53 chr12 79602934 79603791 -41653739 - Lx7 LINE L1 -4129 1751 887 1 1192 301 346 78 17 chr12 79604244 79604476 -41653054 - Lx7 LINE L1 -6961 767 522 1 1192 27 87 0 0 chr12 79604579 79604648 -41652882 + AT_rich Low_complexity Low_complexity 1 69 0 1 1192 307 323 46 0 chr12 79604694 79604824 -41652706 - MIR SINE MIR -2 260 125 1 1192 340 387 116 48 chr12 79604840 79605253 -41652277 - LTR33 LTR ERVL 0 515 75 1 1192 433 216 233 0 chr12 79607520 79607636 -41649894 + B1F SINE Alu 1 143 -6 1 1192 227 278 0 0 chr12 79607640 79607694 -41649836 + A-rich Low_complexity Low_complexity 4 57 0 1 1192 914 86 8 0 chr12 79607994 79608122 -41649408 + B1_Mus1 SINE Alu 20 148 0 1 1192 207 0 0 0 chr12 79608122 79608145 -41649385 + (CAAAAA)n Simple_repeat Simple_repeat 5 27 0 1 1192 22 35 0 0 chr12 79608392 79608421 -41649109 + AT_rich Low_complexity Low_complexity 1 29 0 1 1192 27 29 0 0 chr12 79608744 79608778 -41648752 + AT_rich Low_complexity Low_complexity 1 34 0 1 1192 303 350 61 48 chr12 79608862 79609027 -41648503 + ID_B1 SINE B4 9 175 -49 1 1192 294 265 111 10 chr12 79608948 79609047 -41648483 + PB1D10 SINE Alu 8 116 -1 1 1192 207 178 44 0 chr12 79609212 79609257 -41648273 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1 1192 6697 82 24 17 chr12 79609780 79610787 -41646743 - Lx3_Mus LINE L1 0 7009 5996 1 1192 834 311 43 25 chr12 79611352 79611632 -41645898 + B4A SINE B4 8 292 0 1 1192 315 0 0 0 chr12 79611643 79611678 -41645852 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1192 23 0 0 0 chr12 79611716 79611739 -41645791 + AT_rich Low_complexity Low_complexity 1 23 0 1 1192 879 249 142 19 chr12 79612306 79612723 -41644807 - Charlie1a DNA MER1_type -39 1416 949 1 1192 1938 199 118 0 chr12 79612783 79613190 -41644340 - Lx5 LINE L1 -3 7047 6593 1 1192 27 0 0 0 chr12 79613194 79613221 -41644309 + AT_rich Low_complexity Low_complexity 1 27 0 1 1192 921 251 133 40 chr12 79613363 79613687 -41643843 - Lx6 LINE L1 0 7460 7107 1 1192 387 141 0 0 chr12 79613882 79613946 -41643584 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1192 1225 317 124 67 chr12 79613993 79614588 -41642942 - Charlie1a DNA MER1_type -564 891 253 1 1192 553 40 13 0 chr12 79614588 79614664 -41642866 + L1_Mus2 LINE L1 6490 6566 0 1 1192 1225 317 124 67 chr12 79614664 79614890 -41642640 - Charlie1a DNA MER1_type -1203 252 23 1 1192 189 0 0 0 chr12 79615000 79615021 -41642509 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1192 1169 43 0 0 chr12 79615022 79615162 -41642368 - B1_Mus2 SINE Alu -7 140 1 1 1192 250 289 13 38 chr12 79615591 79615670 -41641860 + ID2 SINE ID 3 79 -4 1 1192 881 278 0 5 chr12 79615893 79616110 -41641420 - B3 SINE B2 0 216 1 1 1192 25 31 0 0 chr12 79616352 79616384 -41641146 + AT_rich Low_complexity Low_complexity 1 32 0 1 1192 892 308 96 62 chr12 79616740 79617176 -41640354 - MTEa-int LTR MaLR -523 1057 607 1 1192 1031 252 23 19 chr12 79617188 79617451 -41640079 - MTEa-int LTR MaLR -1311 269 6 1 1192 409 272 84 31 chr12 79617446 79617597 -41639933 - MTEa LTR MaLR -28 351 178 1 1192 226 205 13 13 chr12 79617702 79617781 -41639749 + (TAGG)n Simple_repeat Simple_repeat 1 79 0 1 1192 327 329 67 18 chr12 79617825 79617954 -41639576 + B1F2 SINE Alu 4 129 -20 1 1192 535 189 28 0 chr12 79618061 79618167 -41639363 + B1_Mur1 SINE Alu 21 129 -20 1 1192 320 302 82 10 chr12 79618348 79618445 -41639085 - MTE-int LTR MaLR -897 683 580 1 1192 975 52 82 0 chr12 79619148 79619282 -41638248 - B1_Mus1 SINE Alu -3 145 1 1 1192 1113 95 0 0 chr12 79619782 79619930 -41637600 - B1_Mus1 SINE Alu 0 148 1 1 1192 659 332 54 22 chr12 79621018 79621295 -41636235 + B4 SINE B4 7 292 0 1 1192 520 136 87 10 chr12 79621520 79621624 -41635906 + Lx9 LINE L1 7524 7635 -9 1 1192 275 269 15 0 chr12 79621666 79621733 -41635797 - 5S rRNA rRNA -31 90 23 1 1192 528 293 15 15 chr12 79621848 79621983 -41635547 + B1F SINE Alu 13 147 -2 1 1192 477 0 0 0 chr12 79622478 79622531 -41634999 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1192 186 43 0 0 chr12 79622662 79622685 -41634845 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1192 270 81 0 0 chr12 79623068 79623105 -41634425 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1192 261 375 10 10 chr12 79623145 79623242 -41634288 - B1F1 SINE Alu -52 97 1 1 1192 25 0 0 0 chr12 79624050 79624075 -41633455 + AT_rich Low_complexity Low_complexity 1 25 0 1 1192 216 0 0 0 chr12 79624090 79624114 -41633416 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1192 22 35 0 0 chr12 79624333 79624362 -41633168 + AT_rich Low_complexity Low_complexity 1 29 0 1 1192 194 167 0 36 chr12 79624673 79624729 -41632801 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1 1192 21 0 0 0 chr12 79624731 79624752 -41632778 + AT_rich Low_complexity Low_complexity 1 21 0 1 1192 26 88 0 0 chr12 79626821 79626889 -41630641 + AT_rich Low_complexity Low_complexity 1 68 0 1 1192 402 21 0 0 chr12 79627061 79627108 -41630422 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1192 392 279 12 13 chr12 79627516 79627631 -41629899 + B1F SINE Alu 1 119 -1 1 1192 32 43 0 0 chr12 79627885 79627931 -41629599 + AT_rich Low_complexity Low_complexity 1 46 0 1 1192 1194 61 0 0 chr12 79628534 79628682 -41628848 + B1_Mus1 SINE Alu 1 148 0 1 1192 222 196 39 0 chr12 79628683 79628734 -41628796 + A-rich Low_complexity Low_complexity 1 53 0 1 1192 21 36 0 0 chr12 79628828 79628856 -41628674 + AT_rich Low_complexity Low_complexity 1 28 0 1 1192 403 315 190 13 chr12 79630317 79630603 -41626927 + MER58B DNA MER1_type 9 340 -1 1 1192 276 314 120 36 chr12 79630786 79630948 -41626582 + B3 SINE B2 9 185 -31 1 1192 360 0 0 0 chr12 79630948 79630988 -41626542 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1192 276 314 120 36 chr12 79630988 79631017 -41626513 + B3 SINE B2 186 215 -1 1 1192 317 270 67 11 chr12 79632877 79632967 -41624563 + B1F SINE Alu 47 141 -8 1 1192 235 209 0 0 chr12 79632990 79633033 -41624497 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1192 207 69 0 0 chr12 79633202 79633231 -41624299 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1192 198 118 0 0 chr12 79633737 79633771 -41623759 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1192 614 205 8 8 chr12 79634192 79634320 -41623210 + B1_Mus1 SINE Alu 3 130 -18 2 1192 25 0 0 0 chr12 79634418 79634443 -41623087 + AT_rich Low_complexity Low_complexity 1 25 0 2 1192 6287 105 49 14 chr12 79635984 79636976 -41620554 - Lx3_Mus LINE L1 0 7009 5983 2 1192 2922 210 62 27 chr12 79637005 79637700 -41619830 - Lx2B LINE L1 -4 6996 6278 2 1192 420 247 21 0 chr12 79638152 79638245 -41619285 + B3A SINE B2 20 114 -84 2 1192 251 140 20 0 chr12 79638245 79638295 -41619235 + CT-rich Low_complexity Low_complexity 2 52 0 2 1192 675 252 0 7 chr12 79638417 79638561 -41618969 + B1_Mur2 SINE Alu 7 149 0 2 1192 895 124 88 17 chr12 79638667 79638848 -41618682 + B2_Mm2 SINE B2 1 194 -1 2 1192 25 0 0 0 chr12 79638955 79638980 -41618550 + AT_rich Low_complexity Low_complexity 1 25 0 2 1192 1170 61 0 0 chr12 79639322 79639469 -41618061 + B1_Mus2 SINE Alu 1 147 0 2 1192 1013 107 208 6 chr12 79642463 79642641 -41614889 + B3 SINE B2 3 216 0 2 1192 455 309 107 75 chr12 79643975 79644321 -41613209 - ORR1E LTR MaLR -2 357 1 2 1192 305 244 153 44 chr12 79644330 79644467 -41613063 - MER105 DNA DNA -22 182 31 2 1192 1160 112 67 0 chr12 79644671 79644850 -41612680 + B2_Mm2 SINE B2 2 192 -3 2 1192 493 196 239 28 chr12 79645047 79645189 -41612341 - RMER16 LTR ERVK -120 413 242 2 1192 397 174 0 14 chr12 79645189 79645259 -41612271 - ETnERV2-int LTR ERVK -4866 2540 2472 2 1192 358 241 58 41 chr12 79645261 79645382 -41612148 + B4A SINE B4 84 206 -86 2 1192 675 190 41 0 chr12 79645771 79645892 -41611638 - B3 SINE B2 -90 126 1 2 1192 346 321 176 26 chr12 79645952 79646224 -41611306 - LTR48 LTR ERV1 -474 313 1 2 1192 26 0 0 0 chr12 79646398 79646424 -41611106 + AT_rich Low_complexity Low_complexity 1 26 0 2 1192 709 196 111 44 chr12 79646504 79646685 -41610845 + B3A SINE B2 6 198 0 2 1192 21 0 0 0 chr12 79647789 79647810 -41609720 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 555 132 0 0 chr12 79647844 79647935 -41609595 + (TA)n Simple_repeat Simple_repeat 1 91 0 2 1192 23 33 0 0 chr12 79649154 79649184 -41608346 + AT_rich Low_complexity Low_complexity 1 30 0 2 1192 21 0 0 0 chr12 79649200 79649221 -41608309 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 227 263 102 34 chr12 79650156 79650274 -41607256 - RLTR21 LTR ERVK -820 752 627 2 1192 1353 220 123 6 chr12 79650315 79650649 -41606881 - ORR1C1 LTR MaLR -1 377 5 2 1192 24 53 0 0 chr12 79650706 79650744 -41606786 + AT_rich Low_complexity Low_complexity 1 38 0 2 1192 858 195 66 75 chr12 79651329 79651662 -41605868 + Lx9 LINE L1 7314 7643 -1 2 1192 27 0 0 0 chr12 79651678 79651705 -41605825 + AT_rich Low_complexity Low_complexity 1 27 0 2 1192 274 275 57 14 chr12 79651713 79651783 -41605747 + ID4_ SINE ID 2 74 -9 2 1192 28 29 0 0 chr12 79651825 79651860 -41605670 + AT_rich Low_complexity Low_complexity 1 35 0 2 1192 437 198 77 8 chr12 79652325 79652442 -41605088 + LTR37A LTR ERV1 289 413 -13 2 1192 390 297 105 35 chr12 79653277 79653448 -41604082 - MIR SINE MIR -42 220 38 2 1192 424 360 99 21 chr12 79653579 79653721 -41603809 + RSINE1 SINE B4 13 165 0 2 1192 326 335 107 76 chr12 79654194 79654462 -41603068 + B4A SINE B4 29 281 -11 2 1192 24 0 0 0 chr12 79654711 79654735 -41602795 + AT_rich Low_complexity Low_complexity 1 24 0 2 1192 23 68 0 0 chr12 79655001 79655045 -41602485 + AT_rich Low_complexity Low_complexity 1 44 0 2 1192 576 40 0 0 chr12 79655363 79655438 -41602092 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1192 479 244 74 109 chr12 79655492 79655694 -41601836 + B3A SINE B2 1 195 0 2 1192 366 268 84 0 chr12 79655866 79656008 -41601522 - Charlie4a DNA MER1_type -134 374 221 2 1192 1081 88 0 0 chr12 79656186 79656334 -41601196 + B1_Mus1 SINE Alu 1 148 0 2 1192 1168 99 61 0 chr12 79657319 79657500 -41600030 + B2_Mm2 SINE B2 2 193 -2 2 1192 242 320 0 0 chr12 79661869 79661966 -41595564 + T-rich Low_complexity Low_complexity 1 97 0 2 1192 1037 98 11 8 chr12 79662144 79662413 -41595117 + (TG)n Simple_repeat Simple_repeat 1 270 0 2 1192 337 324 19 57 chr12 79663132 79663289 -41594241 - MER2 DNA MER2_type -1 344 194 2 1192 276 254 0 0 chr12 79663273 79663328 -41594202 - ID2 SINE ID -27 56 2 2 1192 437 207 76 17 chr12 79663328 79663446 -41594084 - MER2 DNA MER2_type -138 207 83 2 1192 298 258 0 16 chr12 79663505 79663568 -41593962 - MER2 DNA MER2_type -283 62 1 2 1192 22 35 0 0 chr12 79663659 79663688 -41593842 + AT_rich Low_complexity Low_complexity 1 29 0 2 1192 5171 76 0 1 chr12 79664029 79664702 -41592828 - L1_Mm LINE L1 -717 5166 4494 2 1192 437 140 65 0 chr12 79664702 79664795 -41592735 + L1_Mus2 LINE L1 6468 6566 0 2 1192 180 222 14 87 chr12 79665159 79665228 -41592302 - L3 LINE CR1 -2020 2469 2406 2 1192 302 297 96 70 chr12 79665456 79665558 -41591972 - RLTR14 LTR ERV1 -33 349 251 2 1192 2929 77 78 7 chr12 79665558 79665979 -41591551 - L1Md_F2 LINE L1 -1 6581 6131 2 1192 302 297 96 70 chr12 79665979 79666075 -41591455 - RLTR14 LTR ERV1 -132 250 147 2 1192 905 168 136 5 chr12 79666433 79666631 -41590899 + Lx LINE L1 6426 6649 -5 2 1192 381 243 131 0 chr12 79666690 79666797 -41590733 + Lx6 LINE L1 7312 7432 -28 2 1192 8914 128 18 6 chr12 79667115 79669337 -41588193 - Lx LINE L1 -4 6650 4403 2 1192 265 179 18 0 chr12 79669378 79669434 -41588096 - Lx3C LINE L1 -2 6974 6918 2 1192 348 339 111 57 chr12 79669506 79669750 -41587780 + B4 SINE B4 14 270 -22 2 1192 1077 95 0 0 chr12 79670068 79670215 -41587315 + B1_Mus1 SINE Alu 2 148 0 2 1192 33 0 0 0 chr12 79670215 79670248 -41587282 + AT_rich Low_complexity Low_complexity 1 33 0 2 1192 449 330 0 0 chr12 79670440 79670543 -41586987 + PB1D10 SINE Alu 8 110 -7 2 1192 1131 254 20 20 chr12 79670880 79671133 -41586397 - Lx8 LINE L1 -1024 6449 6197 2 1192 211 259 78 11 chr12 79671288 79671378 -41586152 + L2 LINE L2 2463 2558 -861 2 1192 226 270 13 13 chr12 79671435 79671510 -41586020 - Lx8 LINE L1 -1545 5928 5854 2 1192 230 186 0 0 chr12 79671623 79671666 -41585864 - L1M5 LINE L1 -409 5755 5713 2 1192 257 304 22 0 chr12 79671718 79671810 -41585720 - L1M3 LINE L1 -1351 4789 4696 2 1192 1047 312 22 14 chr12 79671878 79672154 -41585376 - B4 SINE B4 -4 288 11 2 1192 40 91 0 0 chr12 79672168 79672278 -41585252 + AT_rich Low_complexity Low_complexity 1 110 0 2 1192 248 284 46 33 chr12 79672294 79672447 -41585083 - L1M3 LINE L1 -1464 4682 4528 2 1192 293 203 45 66 chr12 79673047 79673142 -41584388 - RMER12B LTR ERVK 0 1404 1339 2 1192 361 228 31 61 chr12 79673125 79673223 -41584307 - RLTR21 LTR ERVK -40 1532 1438 2 1192 4268 153 62 30 chr12 79673284 79674087 -41583443 - RMER12B LTR ERVK -439 965 137 2 1192 4033 154 191 28 chr12 79674087 79674646 -41582884 - RLTR25B LTR ERVK 0 1028 319 2 1192 378 163 43 0 chr12 79674646 79674738 -41582792 - Lx LINE L1 0 6654 6559 2 1192 4033 154 191 28 chr12 79674738 79675062 -41582468 - RLTR25B LTR ERVK -710 318 1 2 1192 744 188 21 7 chr12 79675062 79675203 -41582327 - RMER12B LTR ERVK -1261 143 1 2 1192 642 176 136 0 chr12 79675401 79675526 -41582004 - B1_Mus1 SINE Alu 0 148 7 2 1192 281 284 0 113 chr12 79675430 79675545 -41581985 - MT2B LTR ERVL -345 256 155 2 1192 419 35 0 17 chr12 79675748 79675806 -41581724 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 2 1192 862 42 144 0 chr12 79675808 79675926 -41581604 - B1_Mus1 SINE Alu -12 136 2 2 1192 367 227 45 0 chr12 79676678 79676766 -41580764 - MER110A LTR ERV1 -292 176 85 2 1192 432 257 30 0 chr12 79677170 79677271 -41580259 - PB1D10 SINE Alu -8 109 6 2 1192 23 0 0 0 chr12 79677280 79677303 -41580227 + AT_rich Low_complexity Low_complexity 1 23 0 2 1192 858 239 51 0 chr12 79677420 79677617 -41579913 + B3 SINE B2 2 208 -8 2 1192 887 132 7 20 chr12 79677671 79677818 -41579712 - URR1A DNA MER1_type 0 226 82 2 1192 180 77 0 0 chr12 79678217 79678243 -41579287 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 2 1192 640 296 111 79 chr12 79678257 79678942 -41578588 + L1M4c LINE L1 809 1610 -4693 2 1192 1144 98 75 0 chr12 79678942 79679115 -41578415 + B2_Mm2 SINE B2 3 188 -7 2 1192 640 292 111 85 chr12 79679115 79679534 -41577996 + L1M4c LINE L1 1381 1801 -4583 2 1192 1041 236 20 0 chr12 79679634 79679837 -41577693 + B3 SINE B2 1 207 -9 2 1192 21 0 0 0 chr12 79680016 79680037 -41577493 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 1467 59 16 0 chr12 79680357 79680543 -41576987 - B2_Mm2 SINE B2 -5 190 2 2 1192 2092 279 81 73 chr12 79680795 79681923 -41575607 - L1MC4 LINE L1 -7 8035 6899 2 1192 450 0 0 0 chr12 79681977 79682027 -41575503 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1192 1975 44 0 39 chr12 79682564 79682822 -41574708 + L1_Mus1 LINE L1 6320 6567 0 2 1192 6070 127 32 12 chr12 79683283 79684871 -41572659 - Lx3C LINE L1 -3 6973 5280 2 1192 973 189 16 0 chr12 79684868 79685053 -41572477 - L1_Mur3 LINE L1 -1690 4190 4003 2 1192 11051 100 14 44 chr12 79685044 79686863 -41570667 - MusHAL1 LINE L1 -2 2710 947 2 1192 609 276 71 53 chr12 79687091 79687317 -41570213 + MTD LTR MaLR 6 235 -186 2 1192 1163 299 98 27 chr12 79687385 79687866 -41569664 - Lx9 LINE L1 -171 7473 6959 2 1192 264 288 0 52 chr12 79689142 79689219 -41568311 - MLT1J LTR MaLR -64 448 376 2 1192 858 287 46 98 chr12 79689568 79689873 -41567657 + B4 SINE B4 1 289 -3 2 1192 353 360 98 8 chr12 79690029 79690264 -41567266 - L2a LINE L2 -201 3225 2970 2 1192 1371 91 16 0 chr12 79690296 79690483 -41567047 + B2_Mm2 SINE B2 2 191 -4 2 1192 300 308 93 33 chr12 79691124 79691275 -41566255 + MIR SINE MIR 7 166 -96 2 1193 284 326 67 11 chr12 79692069 79692159 -41565371 + Tigger5 DNA MER2_type 118 212 -2194 2 1193 253 264 10 117 chr12 79692169 79692208 -41565322 + Tigger5 DNA MER2_type 2290 2322 -84 2 1193 437 297 18 0 chr12 79692208 79692319 -41565211 - PB1D10 SINE Alu 0 117 5 3 1193 253 264 10 117 chr12 79692319 79692382 -41565148 + Tigger5 DNA MER2_type 2323 2381 -25 2 1193 302 98 0 19 chr12 79692465 79692517 -41565013 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1193 563 259 76 0 chr12 79692721 79692852 -41564678 - B1_Mur1 SINE Alu -3 146 6 3 1193 2056 136 14 25 chr12 79693259 79693621 -41563909 - RLTR15 LTR ERVK 0 359 2 3 1193 1079 316 0 10 chr12 79693701 79693989 -41563541 + B4 SINE B4 8 292 0 3 1193 197 319 21 32 chr12 79694034 79694128 -41563402 - MIR3 SINE MIR -3 205 113 3 1193 520 295 135 38 chr12 79695690 79696134 -41561396 - L1M2 LINE L1 -3190 2953 2467 3 1193 326 273 25 0 chr12 79696119 79696240 -41561290 - L1_Rod LINE L1 -3446 2401 2278 3 1193 464 342 74 20 chr12 79697043 79697246 -41560284 - Tigger7 DNA MER2_type -2277 214 1 3 1193 271 242 160 10 chr12 79697490 79697590 -41559940 + PB1D10 SINE Alu 2 116 -1 3 1193 533 304 12 42 chr12 79697879 79698047 -41559483 + RSINE1 SINE B4 2 164 -1 3 1193 677 230 55 7 chr12 79698240 79698384 -41559146 + RSINE1 SINE B4 7 165 0 3 1193 1209 41 0 0 chr12 79698751 79698898 -41558632 + B1_Mm SINE Alu 1 147 0 3 1193 632 85 0 0 chr12 79699028 79699110 -41558420 + L1_Mus1 LINE L1 6085 6166 -401 3 1193 303 53 0 0 chr12 79699273 79699311 -41558219 + ORR1A4 LTR MaLR 284 321 -8 3 1193 1457 287 85 103 chr12 79699321 79699441 -41558089 - L1M2 LINE L1 -1231 4912 4787 3 1193 387 41 0 0 chr12 79699441 79699490 -41558040 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1193 1457 287 85 103 chr12 79699490 79699633 -41557897 - L1M2 LINE L1 -1357 4786 4691 3 1193 230 0 0 32 chr12 79699633 79699664 -41557866 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 3 1193 1457 287 85 103 chr12 79699664 79701102 -41556428 - L1M2 LINE L1 -1453 4690 3241 3 1193 195 186 0 0 chr12 79701108 79701151 -41556379 + T-rich Low_complexity Low_complexity 1 43 0 3 1193 3524 128 3 46 chr12 79701193 79701799 -41555731 - Lx3C LINE L1 -7 6969 6390 3 1193 12428 45 2 1 chr12 79701799 79704049 -41553481 - L1Md_F2 LINE L1 -14 6568 4320 3 1193 2688 111 17 12 chr12 79704038 79704457 -41553073 - Lx3C LINE L1 -857 6116 5696 3 1193 369 196 41 0 chr12 79704561 79704658 -41552872 + Lx9 LINE L1 7543 7643 -1 3 1193 1060 185 34 5 chr12 79704778 79704984 -41552546 + B3 SINE B2 5 216 0 3 1193 1664 262 82 24 chr12 79705445 79705946 -41551584 - RMER15 LTR ERVL -19 556 27 3 1193 504 270 161 11 chr12 79706120 79706300 -41551230 + B3 SINE B2 5 211 -5 3 1193 4035 63 8 2 chr12 79706441 79706967 -41550563 - L1_Mus1 LINE L1 0 6567 6039 3 1193 784 229 83 52 chr12 79707200 79707430 -41550100 - Lx8 LINE L1 -363 7110 6874 3 1193 930 136 20 20 chr12 79707595 79707745 -41549785 - B1_Mur4 SINE Alu 0 150 1 3 1193 295 333 32 0 chr12 79707943 79708036 -41549494 + PB1D10 SINE Alu 6 101 -16 3 1193 5829 48 23 0 chr12 79708429 79709154 -41548376 + L1Md_F2 LINE L1 5841 6582 0 3 1193 437 32 0 0 chr12 79709390 79709452 -41548078 + L1_Mus3 LINE L1 6572 6633 -5 3 1193 207 244 11 23 chr12 79709490 79709578 -41547952 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 1193 210 37 0 0 chr12 79710058 79710085 -41547445 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 1193 225 235 118 0 chr12 79710489 79710540 -41546990 + ID4_ SINE ID 5 61 -22 3 1193 370 254 35 21 chr12 79710994 79711139 -41546391 - L1MA7 LINE L1 -49 6242 6096 3 1193 564 280 68 22 chr12 79711223 79711572 -41545958 - Lx7 LINE L1 0 7696 7188 3 1193 494 107 13 0 chr12 79711900 79711975 -41545555 - B1_Mus2 SINE Alu 0 147 72 3 1193 240 263 0 69 chr12 79711975 79712002 -41545528 - ID_B1 SINE B4 -1 223 129 3 1193 266 353 0 48 chr12 79712164 79712289 -41545241 + B1F SINE Alu 1 120 0 3 1193 22 35 0 0 chr12 79712522 79712551 -41544979 + AT_rich Low_complexity Low_complexity 1 29 0 3 1193 1158 61 0 0 chr12 79712710 79712857 -41544673 + B1_Mm SINE Alu 1 147 0 3 1193 366 239 0 14 chr12 79712872 79712944 -41544586 + B4A SINE B4 2 72 -220 3 1193 515 323 23 0 chr12 79713184 79713317 -41544213 + B1F2 SINE Alu 7 142 -7 3 1193 180 77 0 0 chr12 79713634 79713660 -41543870 + (CAT)n Simple_repeat Simple_repeat 2 27 0 3 1193 330 26 0 0 chr12 79714538 79714577 -41542953 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1193 391 295 35 18 chr12 79714832 79714946 -41542584 + PB1D10 SINE Alu 2 117 0 3 1193 21 0 0 0 chr12 79714950 79714971 -41542559 + AT_rich Low_complexity Low_complexity 1 21 0 3 1193 439 307 39 7 chr12 79715024 79715178 -41542352 + RSINE1 SINE B4 3 161 -4 3 1193 811 206 136 0 chr12 79715303 79715487 -41542043 + B3 SINE B2 3 211 -5 3 1193 517 292 93 51 chr12 79715724 79716071 -41541459 + Lx8 LINE L1 6932 7300 -396 3 1193 1156 61 0 33 chr12 79716177 79716316 -41541214 + B1_Mus1 SINE Alu 1 139 -9 3 1193 405 0 0 0 chr12 79716316 79716361 -41541169 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1193 1156 61 0 33 chr12 79716361 79716374 -41541156 + B1_Mus1 SINE Alu 140 148 0 3 1193 180 0 0 0 chr12 79716374 79716394 -41541136 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1193 184 321 25 13 chr12 79716752 79716831 -41540699 - L2a LINE L2 0 3426 3347 3 1193 776 326 114 32 chr12 79716851 79717263 -41540267 - LTR33 LTR ERVL -59 456 11 3 1193 555 189 0 0 chr12 79717526 79717653 -41539877 + (TG)n Simple_repeat Simple_repeat 2 128 0 3 1193 744 228 102 41 chr12 79717671 79717868 -41539662 + B3 SINE B2 2 210 -6 3 1193 4569 140 58 40 chr12 79718512 79719469 -41538061 + L1Md_F2 LINE L1 374 1344 -5294 3 1193 13576 58 28 5 chr12 79721332 79723202 -41534328 + L1Md_F2 LINE L1 3673 5585 -298 3 1193 7940 55 0 3 chr12 79723203 79724190 -41533340 + L1Md_F2 LINE L1 5587 6570 -12 3 1193 1238 166 185 29 chr12 79724967 79725298 -41532232 - MTD LTR MaLR 0 421 19 3 1193 812 210 138 0 chr12 79725325 79725506 -41532024 + B3 SINE B2 3 208 -8 3 1193 309 311 37 19 chr12 79726064 79726172 -41531358 + RMER12 LTR ERVK 733 842 -480 3 1193 4945 61 5 0 chr12 79726308 79726930 -41530600 + L1_Mus3 LINE L1 6014 6638 0 3 1193 212 367 91 10 chr12 79727683 79727782 -41529748 - MamSINE1 SINE tRNA -183 107 1 3 1193 217 224 0 38 chr12 79728248 79728327 -41529203 + (TAAA)n Simple_repeat Simple_repeat 1 76 0 3 1193 272 176 38 63 chr12 79728747 79728826 -41528704 - L1M3 LINE L1 -527 5641 5565 3 1193 523 203 66 25 chr12 79728831 79728952 -41528578 - B1_Mur1 SINE Alu -23 126 1 3 1193 324 0 0 0 chr12 79729005 79729041 -41528489 + (TTG)n Simple_repeat Simple_repeat 2 37 0 3 1193 234 213 31 21 chr12 79729060 79729156 -41528374 + (TATAA)n Simple_repeat Simple_repeat 2 98 0 3 1193 423 209 44 15 chr12 79729249 79729385 -41528145 - L1MB2 LINE L1 -119 6052 5913 3 1193 3054 71 5 2 chr12 79729385 79729780 -41527750 - MTA_Mm LTR MaLR 0 396 1 3 1193 2756 79 63 12 chr12 79729780 79730192 -41527338 - MTA_Mm-int LTR MaLR 0 1098 666 3 1193 3720 100 2 4 chr12 79730192 79730743 -41526787 - L1VL4 LINE L1 -5558 744 195 3 1193 239 256 0 35 chr12 79730773 79730858 -41526672 - L1M5 LINE L1 -347 5777 5696 3 1193 639 305 11 21 chr12 79731191 79731382 -41526148 - B3A SINE B2 -1 197 9 3 1193 231 114 0 0 chr12 79731400 79731435 -41526095 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1193 221 304 0 92 chr12 79731473 79731525 -41526005 - B4A SINE B4 -167 125 79 3 1193 261 0 0 0 chr12 79731525 79731554 -41525976 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 3 1193 221 304 0 92 chr12 79731554 79731577 -41525953 - B4A SINE B4 -214 78 57 3 1193 369 0 0 0 chr12 79731793 79731834 -41525696 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1193 1252 254 58 38 chr12 79732795 79733138 -41524392 - ORR1E LTR MaLR -5 354 5 3 1193 430 185 0 12 chr12 79733335 79733417 -41524113 - MER34A1 LTR ERV1 -501 86 6 3 1193 650 190 87 7 chr12 79733938 79734076 -41523454 + B1F2 SINE Alu 1 149 0 3 1193 305 100 20 0 chr12 79734079 79734129 -41523401 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 3 1193 1463 78 16 0 chr12 79734467 79734659 -41522871 - B2_Mm2 SINE B2 0 195 1 3 1193 1103 81 222 0 chr12 79734762 79734960 -41522570 - Lx LINE L1 -2 6652 6411 3 1193 324 0 0 0 chr12 79735029 79735065 -41522465 + (CTATT)n Simple_repeat Simple_repeat 5 40 0 3 1193 405 0 0 0 chr12 79735664 79735709 -41521821 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1193 4489 58 31 3 chr12 79735791 79736362 -41521168 - LTRIS_Mus LTR ERV1 0 587 1 3 1193 3847 174 22 14 chr12 79736428 79737138 -41520392 - RMER6D LTR ERVK -4 716 1 3 1193 204 325 72 0 chr12 79737488 79737571 -41519959 - MIRb SINE MIR -76 192 104 3 1193 910 218 62 0 chr12 79737931 79738124 -41519406 + B3 SINE B2 2 206 -10 3 1193 210 75 75 0 chr12 79740200 79740253 -41517277 + (GTTTG)n Simple_repeat Simple_repeat 5 61 0 3 1193 249 119 0 0 chr12 79740261 79740303 -41517227 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1193 925 239 14 19 chr12 79741541 79741750 -41515780 - B3 SINE B2 -6 210 3 3 1193 201 341 24 12 chr12 79741998 79742081 -41515449 - MIRc SINE MIR -142 126 43 3 1193 423 0 0 0 chr12 79742634 79742681 -41514849 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1193 228 292 25 55 chr12 79742764 79742866 -41514664 + GA-rich Low_complexity Low_complexity 3 105 0 3 1193 1886 60 0 53 chr12 79742866 79743131 -41514399 + L1Md_F2 LINE L1 6332 6582 0 3 1193 228 292 25 55 chr12 79743131 79743191 -41514339 + polypurine Low_complexity Low_complexity 106 160 0 3 1193 458 172 192 24 chr12 79743633 79743758 -41513772 + B1_Mus1 SINE Alu 1 146 -2 3 1193 859 202 83 0 chr12 79744378 79744571 -41512959 + B3 SINE B2 3 211 -5 3 1193 5362 33 2 0 chr12 79745589 79746219 -41511311 - L1Md_T LINE L1 0 6582 5952 3 1193 567 290 109 83 chr12 79746337 79746732 -41510798 - RMER10A LTR ERVL -19 423 19 4 1193 2362 87 15 71 chr12 79746732 79747217 -41510313 - L1_Mus2 LINE L1 0 6566 6180 4 1193 475 264 101 0 chr12 79747348 79747477 -41510053 - B1_Mur1 SINE Alu -5 144 3 4 1193 201 74 0 0 chr12 79747479 79747506 -41510024 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1193 5872 195 43 9 chr12 79747914 79749181 -41508349 - Lx9 LINE L1 -22 7622 6314 4 1193 456 19 0 0 chr12 79749183 79749236 -41508294 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1193 236 260 229 11 chr12 79749261 79749440 -41508090 - Lx9 LINE L1 -1398 6246 6029 4 1193 511 301 146 28 chr12 79750069 79750322 -41507208 + B4A SINE B4 7 289 -3 4 1193 477 50 0 0 chr12 79750324 79750384 -41507146 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1193 1430 248 50 135 chr12 79750678 79751233 -41506297 + RLTR20C LTR ERVK 13 520 -14 4 1193 212 122 41 0 chr12 79751464 79751513 -41506017 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 1193 874 145 14 0 chr12 79751705 79751843 -41505687 - B1_Mur3 SINE Alu -4 145 6 4 1193 207 0 0 0 chr12 79752911 79752934 -41504596 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1193 509 271 41 0 chr12 79753731 79753883 -41503647 - MIR SINE MIR -59 209 34 4 1193 1408 84 5 0 chr12 79754003 79754194 -41503336 - B2_Mm2 SINE B2 -2 193 2 4 1193 1002 17 0 0 chr12 79754715 79754831 -41502699 + (TTC)n Simple_repeat Simple_repeat 1 116 0 4 1193 1350 86 0 0 chr12 79754831 79755168 -41502362 + (TCC)n Simple_repeat Simple_repeat 1 337 0 4 1193 459 304 9 9 chr12 79755277 79755390 -41502140 - PB1D7 SINE Alu -1 119 7 4 1193 278 303 150 10 chr12 79755430 79755530 -41502000 - MER81 DNA AcHobo 0 114 1 4 1193 1032 283 146 12 chr12 79755964 79756307 -41501223 - MTD LTR MaLR -12 407 19 4 1193 6951 57 4 3 chr12 79756375 79757324 -41500206 + L1_Mus1 LINE L1 5654 6567 0 4 1193 549 215 108 0 chr12 79757960 79758090 -41499440 - ID_B1 SINE B4 -1 223 80 4 1193 214 333 69 0 chr12 79759411 79759483 -41498047 + PB1D9 SINE Alu 1 77 -43 4 1193 421 305 94 25 chr12 79759577 79759779 -41497751 - MTEb LTR MaLR -1 378 163 4 1193 375 272 58 165 chr12 79760194 79760357 -41497173 + B3 SINE B2 1 150 -66 4 1193 622 180 0 28 chr12 79760357 79760500 -41497030 - L1Md_F3 LINE L1 0 6584 6446 4 1193 375 272 58 165 chr12 79760500 79760578 -41496952 + B3 SINE B2 151 216 0 4 1193 304 246 258 43 chr12 79760757 79760942 -41496588 + B4A SINE B4 6 230 -62 4 1193 255 217 33 16 chr12 79761097 79761158 -41496372 + CT-rich Low_complexity Low_complexity 5 66 0 4 1193 316 190 57 102 chr12 79761166 79761254 -41496276 + B4A SINE B4 209 292 0 4 1193 22 0 0 0 chr12 79761288 79761310 -41496220 + AT_rich Low_complexity Low_complexity 1 22 0 4 1193 959 131 0 6 chr12 79761758 79761919 -41495611 + (TA)n Simple_repeat Simple_repeat 2 161 0 4 1193 264 306 9 148 chr12 79761976 79762091 -41495439 + PB1D10 SINE Alu 2 100 -17 4 1193 852 164 21 0 chr12 79762242 79762382 -41495148 + B1_Mur2 SINE Alu 1 143 -6 4 1193 1340 11 14 19 chr12 79762768 79763128 -41494402 + (TG)n Simple_repeat Simple_repeat 1 357 0 4 1193 851 302 19 5 chr12 79763128 79763341 -41494189 - B4A SINE B4 -75 217 2 4 1193 350 241 200 21 chr12 79763341 79763621 -41493909 + L1MEg LINE L1 1075 1404 -4680 4 1193 736 176 30 0 chr12 79763680 79763811 -41493719 + B1_Mur3 SINE Alu 1 135 -14 4 1193 222 37 0 0 chr12 79763811 79763838 -41493692 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 4 1193 759 256 118 30 chr12 79763934 79764196 -41493334 - Lx8 LINE L1 -187 7286 7002 4 1193 1293 253 38 25 chr12 79764551 79764945 -41492585 - Lx8 LINE L1 -481 6992 6594 4 1193 429 318 0 9 chr12 79765102 79765213 -41492317 - PB1D10 SINE Alu -7 110 1 4 1193 322 349 0 9 chr12 79765118 79765225 -41492305 - ID_B1 SINE B4 -49 175 70 4 1193 183 42 0 0 chr12 79766291 79766315 -41491215 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1193 721 130 26 0 chr12 79766849 79766964 -41490566 + PB1D9 SINE Alu 1 118 -2 4 1193 1079 215 5 5 chr12 79767087 79767297 -41490233 + B3 SINE B2 1 210 -6 4 1193 684 194 14 20 chr12 79767453 79767600 -41489930 + B1_Mus2 SINE Alu 2 147 0 4 1193 27 0 0 0 chr12 79767600 79767627 -41489903 + AT_rich Low_complexity Low_complexity 1 27 0 4 1193 433 220 121 60 chr12 79767632 79767748 -41489782 + RSINE1 SINE B4 3 125 -40 4 1193 308 206 55 0 chr12 79768573 79768646 -41488884 + B4A SINE B4 9 85 -207 4 1193 755 163 0 7 chr12 79768654 79768802 -41488728 + GA-rich Low_complexity Low_complexity 2 148 0 4 1193 180 0 0 0 chr12 79768987 79769007 -41488523 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1193 291 387 35 29 chr12 79769065 79769238 -41488292 + MIRb SINE MIR 29 202 -66 4 1193 736 121 124 36 chr12 79769510 79769647 -41487883 - B1_Mur3 SINE Alu 0 149 1 4 1193 535 298 92 0 chr12 79769676 79769817 -41487713 + RSINE1 SINE B4 2 155 -10 4 1193 1009 203 43 0 chr12 79770203 79770410 -41487120 + B3 SINE B2 1 216 0 4 1193 375 325 26 9 chr12 79771154 79771269 -41486261 + ID_B1 SINE B4 60 176 -48 4 1193 491 267 10 0 chr12 79771180 79771281 -41486249 + PB1D10 SINE Alu 6 107 -10 4 1193 232 325 7 162 chr12 79771596 79771750 -41485780 + B1F SINE Alu 20 149 0 4 1193 2359 97 21 59 chr12 79772244 79772617 -41484913 - RLTR10D LTR ERVK 0 359 1 4 1193 2721 63 9 86 chr12 79772785 79773204 -41484326 - RLTR10 LTR ERVK -3 387 1 4 1193 14657 23 41 30 chr12 79773206 79775128 -41482402 - RLTR10-int LTR ERVK -3 1984 41 4 1193 2721 63 9 86 chr12 79775143 79775562 -41481968 - RLTR10 LTR ERVK -3 387 1 4 1193 313 343 134 0 chr12 79775668 79775802 -41481728 + RSINE1 SINE B4 2 153 -12 4 1193 22 57 0 19 chr12 79776017 79776034 -41481496 + AT_rich Low_complexity Low_complexity 1 17 0 4 1193 669 245 6 30 chr12 79776034 79776198 -41481332 + RSINE1 SINE B4 5 164 -1 4 1193 22 57 0 19 chr12 79776198 79776234 -41481296 + AT_rich Low_complexity Low_complexity 1 36 0 4 1193 1072 94 88 0 chr12 79776270 79776441 -41481089 - Lx3C LINE L1 -2 6974 6789 4 1193 230 235 20 0 chr12 79776441 79776492 -41481038 - B3A SINE B2 -18 180 129 4 1193 1660 251 91 25 chr12 79776568 79777395 -41480135 + L1M2 LINE L1 3887 4791 -1352 4 1193 388 279 108 62 chr12 79777398 79777593 -41479937 + B4A SINE B4 2 205 -87 4 1193 818 224 40 6 chr12 79777833 79778008 -41479522 - B3A SINE B2 -16 182 2 4 1193 546 303 113 3 chr12 79778008 79778326 -41479204 + L1M2 LINE L1 4837 5189 -951 4 1193 384 233 127 45 chr12 79778334 79778491 -41479039 + L1MA6 LINE L1 5270 5439 -864 4 1193 958 130 0 0 chr12 79778491 79778629 -41478901 + B1_Mur4 SINE Alu 1 138 -12 4 1193 384 287 179 74 chr12 79778629 79779036 -41478494 + L1MA6 LINE L1 5440 5889 -411 4 1193 185 0 40 0 chr12 79779049 79779074 -41478456 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1193 316 216 85 1 chr12 79779465 79779545 -41477985 + PB1D10 SINE Alu 5 90 -57 4 1193 230 278 65 59 chr12 79779857 79780010 -41477520 - MLT1B LTR MaLR -163 227 74 4 1193 689 185 101 29 chr12 79780248 79780387 -41477143 + B1_Mur4 SINE Alu 2 150 0 4 1193 701 76 0 0 chr12 79780433 79780525 -41477005 + 4.5SRNA scRNA scRNA 1 92 -2 4 1193 1191 41 7 0 chr12 79780525 79780670 -41476860 + B1_Mus1 SINE Alu 2 147 -1 4 1193 243 61 0 0 chr12 79780752 79780785 -41476745 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1193 234 0 0 0 chr12 79780970 79780996 -41476534 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1193 811 135 16 0 chr12 79780996 79781122 -41476408 - B1_Mur4 SINE Alu -11 139 12 4 1193 932 232 25 25 chr12 79781552 79781751 -41475779 + B3 SINE B2 7 205 -11 4 1193 1173 75 0 0 chr12 79781986 79782133 -41475397 + B1_Mus2 SINE Alu 1 147 0 4 1193 21 0 0 0 chr12 79782133 79782154 -41475376 + AT_rich Low_complexity Low_complexity 1 21 0 4 1193 394 188 147 115 chr12 79782515 79782671 -41474859 + RSINE1 SINE B4 5 165 0 4 1193 221 250 0 18 chr12 79782892 79782949 -41474581 + GA-rich Low_complexity Low_complexity 3 58 0 4 1193 504 0 0 0 chr12 79786133 79786189 -41471341 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 4 1193 246 300 25 0 chr12 79786208 79786288 -41471242 - ID_B1 SINE B4 -64 160 79 4 1193 196 314 405 28 chr12 79786931 79787088 -41470442 - MIR SINE MIR -19 243 28 4 1193 346 321 75 28 chr12 79788696 79788839 -41468691 - B1F2 SINE Alu 0 147 1 4 1193 232 372 0 11 chr12 79788862 79788949 -41468581 - L2b LINE L2 0 3375 3290 4 1193 300 53 0 0 chr12 79788985 79789023 -41468507 + (TATG)n Simple_repeat Simple_repeat 2 39 0 4 1193 310 266 166 57 chr12 79789375 79789586 -41467944 - LTR50 LTR ERVL -531 264 31 4 1193 181 336 54 18 chr12 79789611 79789723 -41467807 - L2b LINE L2 -249 3138 3023 4 1193 338 265 91 66 chr12 79790392 79790513 -41467017 + ID4 SINE ID 7 130 -22 4 1193 485 259 35 26 chr12 79791254 79791369 -41466161 + PB1D10 SINE Alu 1 116 -1 4 1193 478 274 104 0 chr12 79792141 79792276 -41465254 - B1F SINE Alu 0 149 1 4 1193 306 0 0 0 chr12 79792417 79792451 -41465079 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1193 902 330 8 12 chr12 79793023 79793241 -41464289 + B4 SINE B4 51 269 -23 4 1193 288 0 0 0 chr12 79793241 79793273 -41464257 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1193 237 33 0 0 chr12 79793273 79793302 -41464228 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1193 902 330 8 12 chr12 79793302 79793324 -41464206 + B4 SINE B4 270 290 -2 4 1193 273 315 152 0 chr12 79793684 79793776 -41463754 + PB1D10 SINE Alu 2 107 -20 4 1193 508 246 110 0 chr12 79794691 79794809 -41462721 - ID_B1 SINE B4 -6 218 88 4 1193 343 228 117 19 chr12 79795683 79795786 -41461744 - PB1D10 SINE Alu 0 117 5 4 1193 756 254 82 26 chr12 79796337 79796531 -41460999 + B3 SINE B2 4 208 -8 4 1193 249 128 0 0 chr12 79796615 79796662 -41460868 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1193 3722 242 43 25 chr12 79796711 79797768 -41459762 + Lx9 LINE L1 6399 7473 -171 5 1193 856 321 9 27 chr12 79798119 79798343 -41459187 - B4A SINE B4 -8 284 65 5 1193 273 119 0 0 chr12 79798632 79798674 -41458856 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1193 558 299 14 35 chr12 79798781 79798923 -41458607 - RSINE1 SINE B4 -6 159 21 5 1193 353 209 93 0 chr12 79798921 79799007 -41458523 - Kanga1a DNA Tc2 -396 358 265 5 1193 946 231 9 76 chr12 79799171 79799327 -41458203 + B4A SINE B4 4 147 -145 5 1193 1216 146 92 0 chr12 79799327 79799533 -41457997 + URR1A DNA MER1_type 2 226 0 5 1193 946 231 9 76 chr12 79799533 79799601 -41457929 + B4A SINE B4 148 213 -79 5 1193 486 325 9 0 chr12 79800390 79800504 -41457026 - RSINE1 SINE B4 -35 130 16 5 1193 201 348 69 0 chr12 79800826 79800932 -41456598 + MIRc SINE MIR 23 142 -126 5 1193 6109 38 1 3 chr12 79801021 79801758 -41455772 - L1Md_F2 LINE L1 -1 6581 5846 5 1193 26267 53 1 19 chr12 79801758 79806046 -41451484 - L1Md_F LINE L1 -1286 4597 389 5 1193 230 95 24 0 chr12 79806076 79806118 -41451412 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 5 1193 27 29 0 0 chr12 79806271 79806305 -41451225 + AT_rich Low_complexity Low_complexity 1 34 0 5 1193 3925 152 43 42 chr12 79806700 79807747 -41449783 - RLTR13D1 LTR ERVK 0 1023 1 5 1193 2256 87 18 6 chr12 79807929 79808432 -41449098 - L1VL2 LINE L1 -632 3282 2866 5 1193 5831 87 32 15 chr12 79808427 79808648 -41448882 - L1VL2 LINE L1 -1707 2207 1958 5 1193 3152 40 42 0 chr12 79808648 79809028 -41448502 - MTA_Mm LTR MaLR 0 396 1 5 1193 5831 78 118 35 chr12 79809028 79810312 -41447218 - L1VL2 LINE L1 -1957 1957 582 5 1193 247 255 61 10 chr12 79810555 79810654 -41446876 - L1M3 LINE L1 -744 5436 5333 5 1193 565 200 0 29 chr12 79811779 79811882 -41445648 - B3 SINE B2 -116 100 1 5 1193 305 196 36 0 chr12 79811910 79811966 -41445564 + ID SINE ID 1 58 -166 5 1193 227 319 57 0 chr12 79814348 79814433 -41443097 + MIR SINE MIR 37 127 -81 5 1193 348 24 0 0 chr12 79814653 79814694 -41442836 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1193 468 0 0 0 chr12 79814694 79814745 -41442785 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1193 234 331 96 15 chr12 79814766 79814901 -41442629 - B4 SINE B4 -12 280 135 5 1193 923 252 70 83 chr12 79814963 79815479 -41442051 - L1MA4A LINE L1 -379 5924 5416 5 1193 285 296 132 14 chr12 79815525 79815669 -41441861 - RSINE1 SINE B4 -2 163 3 5 1193 396 0 0 0 chr12 79816924 79816968 -41440562 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1193 614 172 103 0 chr12 79817080 79817196 -41440334 + B3A SINE B2 2 129 -69 5 1193 575 195 8 0 chr12 79817202 79817330 -41440200 + CT-rich Low_complexity Low_complexity 1 129 0 5 1193 23 33 0 0 chr12 79817362 79817392 -41440138 + AT_rich Low_complexity Low_complexity 1 30 0 5 1193 829 180 201 6 chr12 79817746 79817925 -41439605 + B3 SINE B2 1 214 -2 5 1193 247 360 13 51 chr12 79817979 79818058 -41439472 + ID4_ SINE ID 2 77 -6 5 1193 1126 266 21 7 chr12 79818379 79818667 -41438863 + B4A SINE B4 1 292 0 5 1193 247 316 52 8 chr12 79818893 79819027 -41438503 + B1F2 SINE Alu 3 142 -7 5 1193 805 243 69 0 chr12 79819286 79819475 -41438055 - B3 SINE B2 -10 206 5 5 1193 494 259 0 25 chr12 79819587 79819706 -41437824 - PB1D10 SINE Alu 0 117 2 5 1193 387 0 0 0 chr12 79819933 79819976 -41437554 + (TTG)n Simple_repeat Simple_repeat 2 44 0 5 1193 515 278 0 0 chr12 79821175 79821283 -41436247 + PB1 SINE Alu 12 119 -8 5 1193 21 0 0 0 chr12 79821333 79821354 -41436176 + AT_rich Low_complexity Low_complexity 1 21 0 5 1193 253 275 29 0 chr12 79821356 79821425 -41436105 + ID2 SINE ID 1 71 -12 5 1193 513 272 58 19 chr12 79821726 79821932 -41435598 + B3 SINE B2 1 214 -2 5 1193 832 173 0 7 chr12 79821945 79822085 -41435445 + B1_Mus2 SINE Alu 7 145 -2 5 1193 1447 69 16 0 chr12 79822593 79822782 -41434748 + B2_Mm2 SINE B2 4 195 0 5 149 560 301 25 19 chr12 79822793 79822952 -41434578 + RSINE1 SINE B4 6 165 0 5 1194 223 351 135 36 chr12 79822952 79822985 -41434545 + B3 SINE B2 5 215 -1 5 1194 485 254 90 0 chr12 79823111 79823233 -41434297 + B1_Mur1 SINE Alu 2 134 -15 5 1194 23 68 0 0 chr12 79823302 79823346 -41434184 + AT_rich Low_complexity Low_complexity 1 44 0 5 1194 228 100 0 0 chr12 79823799 79823839 -41433691 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1194 367 301 186 0 chr12 79823897 79824010 -41433520 - RSINE1 SINE B4 -29 136 3 5 1194 429 66 0 0 chr12 79824281 79824342 -41433188 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1194 261 0 0 0 chr12 79824499 79824528 -41433002 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1194 218 197 167 0 chr12 79825256 79825322 -41432208 - B4 SINE B4 -213 79 3 5 1194 535 269 27 14 chr12 79825330 79825477 -41432053 - B1F SINE Alu 0 149 1 5 1194 315 287 24 54 chr12 79826069 79826235 -41431295 - L1MC2 LINE L1 -151 6193 6033 5 1194 426 284 190 49 chr12 79826274 79826437 -41431093 - B3 SINE B2 -30 186 1 5 1194 893 169 0 76 chr12 79826460 79826658 -41430872 - B2_Mm2 SINE B2 -6 189 7 5 1194 266 317 0 0 chr12 79826678 79826738 -41430792 - ID4 SINE ID 0 83 24 5 1194 450 241 111 15 chr12 79826779 79826914 -41430616 - B1_Mur1 SINE Alu 0 149 2 5 1194 363 96 0 0 chr12 79826950 79827002 -41430528 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 5 1194 738 237 7 14 chr12 79827032 79827173 -41430357 - RSINE1 SINE B4 -21 144 5 5 1194 697 151 0 40 chr12 79827211 79827222 -41430308 - B1_Mus1 SINE Alu -1 147 140 5 1194 470 32 0 31 chr12 79827222 79827287 -41430243 + (TTGG)n Simple_repeat Simple_repeat 2 64 0 5 1194 697 151 0 40 chr12 79827287 79827399 -41430131 - B1_Mus1 SINE Alu -9 139 29 5 1194 301 273 256 0 chr12 79827442 79827563 -41429967 - B3 SINE B2 -64 152 1 5 1194 747 186 20 27 chr12 79827621 79827770 -41429760 - B1_Mus1 SINE Alu 0 148 1 5 1194 888 204 102 0 chr12 79830056 79830242 -41427288 - B3 SINE B2 -10 206 2 5 1194 278 269 50 25 chr12 79830411 79830491 -41427039 + B3A SINE B2 101 182 -16 5 1194 270 136 0 0 chr12 79830491 79830535 -41426995 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1194 180 310 146 60 chr12 79830980 79831131 -41426399 - L2 LINE L2 -555 2864 2701 5 1194 824 226 92 57 chr12 79831258 79831539 -41425991 + B4 SINE B4 1 291 -1 5 1194 423 226 54 0 chr12 79833509 79833602 -41423928 - RSINE1 SINE B4 -60 105 8 5 1194 229 216 158 33 chr12 79833556 79833676 -41423854 - Charlie21a DNA MER1_type -535 678 544 5 1194 21 36 0 0 chr12 79833758 79833786 -41423744 + AT_rich Low_complexity Low_complexity 1 28 0 5 1194 653 244 57 136 chr12 79833789 79834017 -41423513 - B3 SINE B2 -1 215 6 5 1194 916 230 5 32 chr12 79834827 79835043 -41422487 + B3 SINE B2 2 211 -5 5 1194 397 286 100 53 chr12 79835068 79835238 -41422292 - MIRb SINE MIR -37 231 54 5 1194 516 266 60 9 chr12 79835725 79835941 -41421589 + L1ME1 LINE L1 5680 5906 -273 5 1194 4249 154 113 29 chr12 79836040 79836962 -41420568 - Lx5 LINE L1 -8 7042 6044 5 1194 2591 118 4 66 chr12 79836960 79837577 -41419953 + Lx5 LINE L1 5456 6045 -1005 5 1194 560 205 2 2 chr12 79837609 79837720 -41419810 - B1_Mur4 SINE Alu -37 112 2 5 1194 287 305 90 93 chr12 79837773 79837896 -41419634 + ORR1E LTR MaLR 3 128 -250 5 1194 1310 180 70 140 chr12 79837896 79838297 -41419233 + ORR1D1 LTR MaLR 2 374 0 5 1194 287 306 125 81 chr12 79838297 79838467 -41419063 + ORR1E LTR MaLR 118 338 -40 5 1194 477 0 0 0 chr12 79838481 79838534 -41418996 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1194 537 92 0 0 chr12 79838848 79838924 -41418606 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1194 862 203 72 22 chr12 79838995 79839176 -41418354 + B3 SINE B2 1 190 -26 5 1194 578 287 74 31 chr12 79839995 79840314 -41417216 + MLT1F1 LTR MaLR 130 511 -58 5 1194 287 167 10 77 chr12 79841585 79841689 -41415841 + A-rich Low_complexity Low_complexity 6 102 0 5 1194 292 353 118 53 chr12 79841742 79842131 -41415399 - L2a LINE L2 -160 3266 2845 5 1194 237 316 112 0 chr12 79842132 79842230 -41415300 - L2a LINE L2 -685 2734 2626 5 1194 203 171 0 0 chr12 79842230 79842265 -41415265 + (TATG)n Simple_repeat Simple_repeat 4 38 0 5 1194 646 281 0 7 chr12 79842290 79842426 -41415104 - RSINE1 SINE B4 -27 138 4 5 1194 530 285 68 28 chr12 79842523 79842700 -41414830 - L2a LINE L2 -960 2459 2276 5 1194 257 247 53 27 chr12 79842720 79842795 -41414735 + ID4 SINE ID 1 77 -6 5 1194 483 354 27 16 chr12 79842831 79843015 -41414515 - MIR SINE MIR -33 229 44 5 1194 3538 163 70 21 chr12 79843452 79844196 -41413334 + Lx3C LINE L1 6194 6973 -3 5 1194 925 148 199 6 chr12 79844205 79844381 -41413149 - B3 SINE B2 -6 210 1 5 1194 31 0 0 0 chr12 79844406 79844437 -41413093 + AT_rich Low_complexity Low_complexity 1 31 0 5 1194 326 346 0 13 chr12 79845125 79845204 -41412326 - AluG_3 SINE Alu -97 214 137 5 1194 255 314 0 105 chr12 79845204 79845230 -41412300 - MT2B2 LTR ERVL -342 219 141 5 1194 273 292 113 84 chr12 79846417 79846701 -41410829 + ORR1D1 LTR MaLR 79 370 -4 5 1194 28 29 0 0 chr12 79846710 79846745 -41410785 + AT_rich Low_complexity Low_complexity 1 35 0 5 1194 747 210 104 8 chr12 79846745 79847006 -41410524 - L1MA8 LINE L1 -19 6272 5996 5 1194 21 89 0 0 chr12 79847812 79847868 -41409662 + AT_rich Low_complexity Low_complexity 1 56 0 5 1194 521 318 55 0 chr12 79848099 79848300 -41409230 + B3 SINE B2 1 212 -4 5 1194 426 313 80 0 chr12 79848337 79848487 -41409043 + MER20 DNA MER1_type 43 204 -15 6 1194 255 305 17 0 chr12 79848764 79848823 -41408707 + L3 LINE CR1 3498 3557 -932 6 1194 21 57 0 0 chr12 79849665 79849700 -41407830 + GC_rich Low_complexity Low_complexity 1 35 0 6 1194 1151 44 0 0 chr12 79851295 79851431 -41406099 - B1_Mm SINE Alu -10 137 2 6 1194 240 35 0 0 chr12 79851530 79851559 -41405971 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1194 534 311 77 6 chr12 79851684 79851865 -41405665 - B3A SINE B2 0 198 5 6 1194 387 264 66 26 chr12 79851931 79852083 -41405447 + MER34A1 LTR ERV1 322 479 -108 6 1194 352 278 107 40 chr12 79852080 79852230 -41405300 - MLT2C1 LTR ERVL -237 160 1 6 1194 509 246 34 0 chr12 79852635 79852753 -41404777 - B1F SINE Alu -27 122 1 6 1194 418 245 49 0 chr12 79853673 79853775 -41403755 - U6 snRNA snRNA 0 107 1 6 1194 340 263 126 16 chr12 79853786 79854013 -41403517 - L1ME1 LINE L1 -294 5884 5630 6 1194 706 319 109 47 chr12 79854048 79854496 -41403034 + MLT1D LTR MaLR 3 478 -27 6 1194 694 241 58 33 chr12 79854539 79854814 -41402716 - L1ME1 LINE L1 -606 5573 5292 6 1194 8145 30 0 2 chr12 79854792 79855963 -41401567 - L1Md_F2 LINE L1 -1 6581 5413 6 1194 230 321 107 0 chr12 79855984 79856096 -41401434 - PB1 SINE Alu -3 124 1 6 1194 620 293 148 19 chr12 79856163 79856804 -41400726 - L1MC LINE L1 -858 5288 4565 6 1194 27 0 0 0 chr12 79856825 79856852 -41400678 + AT_rich Low_complexity Low_complexity 1 27 0 6 1194 240 277 81 7 chr12 79856923 79857072 -41400458 - L1MD LINE L1 -1606 4540 4381 6 1194 399 270 18 26 chr12 79857174 79857288 -41400242 - PB1D10 SINE Alu 0 117 5 6 1194 369 194 57 147 chr12 79857302 79857410 -41400120 - PB1 SINE Alu -6 111 13 6 1194 790 192 91 21 chr12 79857448 79857634 -41399896 - B3 SINE B2 -17 199 1 6 1194 381 43 0 0 chr12 79857783 79857830 -41399700 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 1194 1056 51 0 28 chr12 79857830 79857962 -41399568 - B1_Mus1 SINE Alu -11 137 6 6 1194 1026 85 139 6 chr12 79858033 79858198 -41399332 - B2_Mm1t SINE B2 -5 188 2 6 1194 323 250 58 45 chr12 79858292 79858451 -41399079 - L1ME1 LINE L1 -2173 3973 3813 6 1194 595 276 121 64 chr12 79858574 79858813 -41398717 - B4 SINE B4 -2 290 42 6 1194 21 36 0 0 chr12 79858821 79858849 -41398681 + AT_rich Low_complexity Low_complexity 1 28 0 6 1194 469 76 15 0 chr12 79859098 79859164 -41398366 - B1_Mur4 SINE Alu -11 139 73 6 1194 230 263 51 38 chr12 79859164 79859177 -41398353 - ID_B1 SINE B4 -11 213 134 6 1194 391 247 172 0 chr12 79859182 79859410 -41398120 + L1MD1 LINE L1 5689 5965 -394 6 1194 865 176 21 0 chr12 79859415 79859557 -41397973 + B1_Mur4 SINE Alu 6 150 0 6 1194 262 204 310 39 chr12 79859582 79859811 -41397719 + L1MD1 LINE L1 5946 6236 -6 6 1194 574 222 52 0 chr12 79860447 79860582 -41396948 + B1F SINE Alu 1 142 -7 6 1194 1885 55 0 80 chr12 79860718 79860993 -41396537 - L1_Mus1 LINE L1 0 6567 6315 6 1194 335 262 103 37 chr12 79861193 79861300 -41396230 - PB1 SINE Alu -13 114 1 6 1194 453 284 112 0 chr12 79861885 79862001 -41395529 - MER58B DNA MER1_type -37 304 176 6 1194 216 136 0 0 chr12 79862450 79862484 -41395046 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1194 1155 68 0 13 chr12 79862484 79862634 -41394896 + B1_Mus1 SINE Alu 1 148 0 6 1194 216 136 0 0 chr12 79862634 79862643 -41394887 + (A)n Simple_repeat Simple_repeat 1 9 0 6 1194 306 318 62 26 chr12 79862886 79862999 -41394531 - RSINE1 SINE B4 -6 159 43 6 1194 602 344 26 15 chr12 79863041 79863236 -41394294 - B3A SINE B2 0 198 2 6 1194 298 285 235 9 chr12 79863259 79863680 -41393850 - L1MD LINE L1 -1058 5088 4573 6 1194 4498 2 0 0 chr12 79863787 79864280 -41393250 - L1Md_A LINE L1 0 6582 6090 6 1194 1177 61 0 0 chr12 79864382 79864530 -41393000 + B1_Mus1 SINE Alu 1 148 0 6 1194 760 194 176 6 chr12 79864678 79864702 -41392828 - B3 SINE B2 -10 206 168 6 1194 273 57 0 0 chr12 79864702 79864737 -41392793 + (TATG)n Simple_repeat Simple_repeat 4 38 0 6 1194 760 194 176 6 chr12 79864737 79864888 -41392642 - B3 SINE B2 -49 167 1 6 1194 722 275 72 0 chr12 79865046 79865253 -41392277 + ID_B1 SINE B4 1 222 -2 6 1194 804 197 94 16 chr12 79865514 79865705 -41391825 - B3 SINE B2 -10 206 1 6 1194 195 42 0 0 chr12 79865717 79865741 -41391789 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1194 1418 302 138 31 chr12 79866242 79866851 -41390679 + MER21B LTR ERV1 1 674 -189 6 1194 600 210 238 6 chr12 79866948 79867116 -41390414 + B3 SINE B2 1 207 -9 6 1194 982 109 13 33 chr12 79867263 79867274 -41390256 - B1_Mur4 SINE Alu 0 150 142 6 1194 198 0 0 0 chr12 79867274 79867296 -41390234 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1194 982 109 13 33 chr12 79867296 79867436 -41390094 - B1_Mur4 SINE Alu -9 141 2 6 1194 703 241 314 27 chr12 79867483 79867706 -41389824 - B4 SINE B4 0 292 6 6 1194 195 177 0 0 chr12 79868031 79868093 -41389437 + T-rich Low_complexity Low_complexity 1 62 0 6 1194 372 302 42 33 chr12 79868103 79868223 -41389307 - B1F1 SINE Alu -1 148 28 6 1194 644 198 17 8 chr12 79868631 79868748 -41388782 - B1_Mur1 SINE Alu -12 137 20 6 1194 1151 76 0 0 chr12 79869883 79870028 -41387502 + B1_Mus2 SINE Alu 3 147 0 6 1194 383 119 0 15 chr12 79870054 79870122 -41387408 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1194 457 252 97 8 chr12 79870127 79870251 -41387279 - RSINE1 SINE B4 -28 137 3 6 1194 431 250 172 15 chr12 79870466 79870600 -41386930 + B3 SINE B2 56 210 -6 6 1194 425 251 58 23 chr12 79870847 79871018 -41386512 - Charlie5 DNA MER1_type -117 2507 2331 6 1194 269 296 11 0 chr12 79871494 79871582 -41385948 - Charlie5 DNA MER1_type -283 2341 2253 6 1194 276 246 109 42 chr12 79871560 79871679 -41385851 - Charlie5 DNA MER1_type -2478 146 20 6 1194 21 0 0 0 chr12 79871874 79871895 -41385635 + AT_rich Low_complexity Low_complexity 1 21 0 6 1194 23 33 0 0 chr12 79872050 79872080 -41385450 + AT_rich Low_complexity Low_complexity 1 30 0 6 1194 587 259 102 11 chr12 79872080 79872256 -41385274 - B3A SINE B2 -6 192 1 6 1194 351 98 0 0 chr12 79872264 79872325 -41385205 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 6 1194 1141 64 0 0 chr12 79872326 79872466 -41385064 - B1_Mm SINE Alu -6 141 2 6 1194 271 105 385 46 chr12 79872550 79872659 -41384871 - B2_Mm2 SINE B2 -3 192 47 6 1194 484 351 99 8 chr12 79873103 79873356 -41384174 - LTR33 LTR ERVL -4 511 236 6 1194 741 252 47 33 chr12 79873521 79873734 -41383796 + B3 SINE B2 1 216 0 6 1194 1275 207 117 34 chr12 79874254 79874604 -41382926 - MTE2b LTR MaLR 0 379 1 6 1194 35 24 0 0 chr12 79874793 79874835 -41382695 + AT_rich Low_complexity Low_complexity 1 42 0 6 1194 530 254 55 39 chr12 79874835 79874962 -41382568 - RSINE1 SINE B4 -33 132 4 6 1194 886 221 51 0 chr12 79875015 79875182 -41382348 + B3 SINE B2 1 177 -39 6 1194 509 89 25 0 chr12 79875182 79875261 -41382269 + (CATA)n Simple_repeat Simple_repeat 4 84 0 6 1194 886 221 51 0 chr12 79875261 79875288 -41382242 + B3 SINE B2 178 204 -12 6 1194 462 158 18 98 chr12 79875564 79875676 -41381854 + MT2B LTR ERVL 162 264 -337 6 1194 763 110 59 0 chr12 79875576 79875694 -41381836 + B1_Mur2 SINE Alu 12 136 -13 6 1194 765 36 264 0 chr12 79875748 79875858 -41381672 + B1_Mus1 SINE Alu 1 139 -9 6 1194 2616 100 43 19 chr12 79876223 79876640 -41380890 - Lx LINE L1 -2 6652 6226 6 1194 422 279 69 53 chr12 79877096 79877195 -41380335 - Tigger7 DNA MER2_type -2 2489 2397 6 1194 324 0 0 0 chr12 79877195 79877231 -41380299 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1194 422 279 69 53 chr12 79877231 79877320 -41380210 - Tigger7 DNA MER2_type -95 2396 2298 6 1194 352 0 0 0 chr12 79877325 79877367 -41380163 - L1Md_F2 LINE L1 -539 6043 6002 6 1194 2307 70 12 3 chr12 79877455 79877799 -41379731 - MusHAL1 LINE L1 -2245 467 121 6 1194 2474 80 36 19 chr12 79877803 79878162 -41379368 + Lx LINE L1 6290 6654 0 6 1194 180 97 0 0 chr12 79878236 79878267 -41379263 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1194 251 333 0 43 chr12 79878990 79879084 -41378446 + MIRb SINE MIR 174 263 -5 6 1194 1176 69 7 0 chr12 79880010 79880155 -41377375 + B1_Mus2 SINE Alu 2 147 0 6 1194 413 318 92 33 chr12 79880201 79880354 -41377176 + RSINE1 SINE B4 3 164 -1 6 1194 851 180 14 0 chr12 79881095 79881234 -41376296 - B1_Mur2 SINE Alu -8 141 1 6 1194 192 77 0 0 chr12 79882259 79882285 -41375245 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1194 414 0 0 0 chr12 79882637 79882683 -41374847 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 6 1194 7100 47 0 3 chr12 79882699 79883621 -41373909 + L1Md_F3 LINE L1 4668 5586 -297 6 1194 7925 39 14 0 chr12 79883621 79884591 -41372939 + L1Md_F3 LINE L1 5587 6570 -14 6 1194 24 0 0 0 chr12 79884779 79884803 -41372727 + AT_rich Low_complexity Low_complexity 1 24 0 6 1194 687 186 13 76 chr12 79884883 79885040 -41372490 + B1_Mur2 SINE Alu 3 149 0 6 1194 183 246 87 0 chr12 79885108 79885177 -41372353 + MIRb SINE MIR 164 238 -30 6 1194 272 246 40 14 chr12 79885354 79885428 -41372102 + PB1 SINE Alu 49 124 -3 6 1194 766 250 71 20 chr12 79885564 79885760 -41371770 - B3 SINE B2 -6 210 5 6 1194 1248 240 81 0 chr12 79885933 79886229 -41371301 - RLTR18B LTR ERVK -3 509 190 6 1194 833 259 11 6 chr12 79886231 79886406 -41371124 + B3 SINE B2 23 198 -18 6 1194 763 238 101 47 chr12 79886572 79886996 -41370534 - L1M2 LINE L1 -1587 4556 4110 6 1194 1339 256 90 11 chr12 79887010 79887378 -41370152 + RCHARR1 DNA MER1_type 46 442 -532 6 1194 522 160 10 0 chr12 79887352 79887452 -41370078 - RCHARR1 DNA MER1_type -60 914 814 6 1194 3155 137 52 0 chr12 79887452 79888103 -41369427 - Lx3C LINE L1 -747 6229 5531 6 1194 545 192 69 25 chr12 79888103 79888263 -41369267 - RCHARR1 DNA MER1_type -485 489 323 6 1194 821 255 45 62 chr12 79888342 79888631 -41368899 - B4A SINE B4 -7 285 2 7 1194 579 293 103 25 chr12 79889952 79890319 -41367211 - L1MA7 LINE L1 -133 6158 5763 7 1194 628 282 75 46 chr12 79890368 79890650 -41366880 - B4A SINE B4 -2 290 1 7 1194 522 234 92 59 chr12 79890650 79890993 -41366537 - L1MA7 LINE L1 -828 5315 4926 7 1194 22 0 0 0 chr12 79891104 79891126 -41366404 + AT_rich Low_complexity Low_complexity 1 22 0 7 1194 233 89 22 0 chr12 79891342 79891387 -41366143 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 7 1194 272 241 76 127 chr12 79891396 79891553 -41365977 - B1F SINE Alu 0 149 1 7 1194 220 266 156 0 chr12 79891561 79891625 -41365905 - PB1D10 SINE Alu -43 74 1 7 1194 502 223 221 6 chr12 79891920 79892078 -41365452 + B3A SINE B2 3 194 -4 7 1194 579 252 59 0 chr12 79892172 79892307 -41365223 + ID_B1 SINE B4 82 224 0 7 1194 208 43 0 115 chr12 79892470 79892522 -41365008 + T-rich Low_complexity Low_complexity 3 48 0 7 1194 239 290 14 28 chr12 79892622 79892693 -41364837 - ID2 SINE ID -10 73 4 7 1194 626 238 16 0 chr12 79892756 79892878 -41364652 + ID_B1 SINE B4 92 215 -9 7 1194 202 128 26 0 chr12 79892885 79892924 -41364606 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 7 1194 518 301 0 9 chr12 79893186 79893300 -41364230 + RSINE1 SINE B4 3 115 -50 7 1194 1044 245 173 18 chr12 79893404 79893733 -41363797 - MTD LTR MaLR -39 380 1 7 1194 296 295 209 14 chr12 79893805 79894025 -41363505 - L1MB8 LINE L1 -60 6124 5862 7 1194 1026 275 25 46 chr12 79894058 79894340 -41363190 - B4A SINE B4 -8 284 9 7 1194 429 90 0 0 chr12 79894367 79894434 -41363096 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1194 330 154 308 0 chr12 79894450 79894528 -41363002 - PB1D9 SINE Alu -16 104 3 7 1194 246 62 0 0 chr12 79894582 79894614 -41362916 + (TTCTC)n Simple_repeat Simple_repeat 4 35 0 7 1194 364 228 72 97 chr12 79894614 79894817 -41362713 - L1MB8 LINE L1 -351 5827 5627 7 1194 716 164 15 38 chr12 79894860 79894993 -41362537 - B3 SINE B2 -86 130 1 7 1194 21 36 0 0 chr12 79896918 79896946 -41360584 + AT_rich Low_complexity Low_complexity 1 28 0 7 1194 623 215 257 5 chr12 79898549 79898759 -41358771 - MTD LTR MaLR 0 419 157 7 1194 1031 260 73 55 chr12 79898753 79899135 -41358395 - RMER15 LTR ERVL -15 560 172 7 1194 595 263 83 9 chr12 79899191 79899375 -41358155 - MTD LTR MaLR -247 172 1 7 1194 3018 274 105 54 chr12 79899375 79899989 -41357541 - MTD-int LTR MaLR 0 1258 604 7 1194 1381 85 0 11 chr12 79899989 79900179 -41357351 + B2_Mm2 SINE B2 2 189 -6 7 1194 3018 274 105 54 chr12 79900179 79900253 -41357277 - MTD-int LTR MaLR -655 603 532 7 1194 4269 48 0 4 chr12 79900253 79900779 -41356751 + L1Md_F2 LINE L1 6059 6582 0 7 1194 3018 276 104 54 chr12 79900779 79901287 -41356243 - MTD-int LTR MaLR -727 531 2 7 1194 899 232 194 8 chr12 79901276 79901527 -41356003 - MTD LTR MaLR 0 419 98 7 1194 315 271 72 10 chr12 79902235 79902332 -41355198 + PB1D10 SINE Alu 15 117 0 7 1194 21 0 0 0 chr12 79905090 79905111 -41352419 + AT_rich Low_complexity Low_complexity 1 21 0 7 1194 497 326 88 0 chr12 79905167 79905348 -41352182 + B3A SINE B2 2 198 0 7 1194 187 237 26 0 chr12 79905397 79905435 -41352095 + MIRm SINE MIR 93 131 -145 7 1194 312 256 140 70 chr12 79905884 79906027 -41351503 + B3A SINE B2 46 198 0 7 1194 191 36 36 0 chr12 79906099 79906127 -41351403 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1194 221 362 21 11 chr12 79906130 79906225 -41351305 - PB1D10 SINE Alu -18 99 4 7 1194 312 91 0 0 chr12 79906328 79906372 -41351158 + (TTA)n Simple_repeat Simple_repeat 3 46 0 7 1194 366 23 0 0 chr12 79906613 79906656 -41350874 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1194 1561 21 21 21 chr12 79906656 79906848 -41350682 - B2_Mm1a SINE B2 0 193 2 7 1194 22 0 0 0 chr12 79907644 79907666 -41349864 + AT_rich Low_complexity Low_complexity 1 22 0 7 1194 771 232 111 0 chr12 79907670 79907851 -41349679 - B3 SINE B2 -12 204 4 7 1194 586 209 18 9 chr12 79908202 79908313 -41349217 - B1_Mus2 SINE Alu -1 146 35 7 1194 367 316 59 15 chr12 79908402 79908537 -41348993 - B4A SINE B4 -2 290 150 7 1194 274 267 26 26 chr12 79908568 79908645 -41348885 - B4A SINE B4 -215 77 1 7 1194 347 296 116 5 chr12 79908812 79909002 -41348528 + L1M5 LINE L1 5476 5686 -438 7 1194 2604 165 31 14 chr12 79909068 79909583 -41347947 - RLTR11A2 LTR ERVK -3 524 1 7 1194 24 0 0 0 chr12 79909614 79909638 -41347892 + AT_rich Low_complexity Low_complexity 1 24 0 7 1194 414 0 0 0 chr12 79910040 79910086 -41347444 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 7 1194 21 0 0 0 chr12 79911150 79911171 -41346359 + AT_rich Low_complexity Low_complexity 1 21 0 7 1194 928 233 23 19 chr12 79911373 79911587 -41345943 - B3 SINE B2 0 216 2 7 1194 306 0 0 0 chr12 79912124 79912158 -41345372 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1194 853 144 7 20 chr12 79912158 79912297 -41345233 - B1_Mus2 SINE Alu -9 138 1 7 1194 242 344 0 0 chr12 79912367 79912431 -41345099 + tRNA-Ala-GCY_ tRNA tRNA 3 66 -9 7 1194 315 0 0 0 chr12 79912454 79912489 -41345041 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1194 976 75 0 15 chr12 79912548 79912684 -41344846 + B1_Mus1 SINE Alu 15 148 0 7 1194 446 220 38 45 chr12 79912703 79912802 -41344728 - B1_Mm SINE Alu -10 110 9 7 1194 246 281 22 89 chr12 79912725 79912815 -41344715 - ID_B1 SINE B4 -63 161 78 7 1194 545 255 53 158 chr12 79912828 79913075 -41344455 + ID_B1 SINE B4 3 223 -1 7 1194 231 36 0 0 chr12 79913076 79913104 -41344426 + (CATA)n Simple_repeat Simple_repeat 3 30 0 7 1194 744 267 36 10 chr12 79913150 79913343 -41344187 - B3A SINE B2 0 198 1 7 1194 494 299 54 13 chr12 79913452 79913601 -41343929 + RSINE1 SINE B4 5 159 -6 7 1194 981 82 82 0 chr12 79913964 79914099 -41343431 - B1_Mus2 SINE Alu 0 147 2 7 1194 237 33 0 0 chr12 79914118 79914148 -41343382 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1194 1257 112 16 26 chr12 79914492 79914685 -41342845 - B2_Mm2 SINE B2 -4 191 1 7 1194 233 250 33 0 chr12 79914693 79914753 -41342777 + BC1_Mm scRNA scRNA 32 93 -59 7 1194 590 243 161 18 chr12 79914828 79915046 -41342484 + MER2 DNA MER2_type 91 339 -6 7 1194 234 302 83 42 chr12 79915069 79915339 -41342191 - L1MB5 LINE L1 -11 6168 5887 7 1194 723 289 92 69 chr12 79915341 79915690 -41341840 - ORR1E LTR MaLR -2 357 1 7 1194 664 269 6 18 chr12 79915935 79916098 -41341432 - RSINE1 SINE B4 0 165 5 7 1194 231 207 161 9 chr12 79916125 79916237 -41341293 - L1MB5 LINE L1 -708 5456 5328 7 1194 22 0 0 0 chr12 79916548 79916570 -41340960 + AT_rich Low_complexity Low_complexity 1 22 0 7 1194 368 221 90 0 chr12 79916761 79916867 -41340663 - PB1D9 SINE Alu 0 120 5 7 1194 210 150 0 0 chr12 79916898 79916938 -41340592 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1194 668 297 17 6 chr12 79916944 79917120 -41340410 - B3A SINE B2 -16 182 5 7 1194 21 0 0 0 chr12 79918200 79918221 -41339309 + AT_rich Low_complexity Low_complexity 1 21 0 7 1194 769 270 65 22 chr12 79919033 79919309 -41338221 + B4A SINE B4 1 288 -4 7 1194 22 0 0 0 chr12 79919320 79919342 -41338188 + AT_rich Low_complexity Low_complexity 1 22 0 7 1194 602 220 104 28 chr12 79919452 79919634 -41337896 - B3 SINE B2 -6 210 15 7 1194 217 169 39 0 chr12 79920500 79920577 -41336953 + T-rich Low_complexity Low_complexity 1 80 0 7 1194 298 300 114 8 chr12 79920621 79920752 -41336778 - MER3 DNA MER1_type -64 145 1 7 1194 937 264 20 5 chr12 79920809 79921007 -41336523 - B3 SINE B2 -7 209 9 7 1194 724 209 50 7 chr12 79921020 79921160 -41336370 - B1_Mur1 SINE Alu -2 147 2 7 1194 21 36 0 0 chr12 79921877 79921905 -41335625 + AT_rich Low_complexity Low_complexity 1 28 0 7 1194 470 281 131 60 chr12 79922268 79922665 -41334865 + L1MB8 LINE L1 5685 6109 -69 7 1194 215 146 20 40 chr12 79922883 79922933 -41334597 + T-rich Low_complexity Low_complexity 4 52 0 7 1194 599 168 10 0 chr12 79923337 79923438 -41334092 - RSINE1 SINE B4 -60 105 4 7 1194 223 270 151 0 chr12 79923581 79923684 -41333846 - B1_Mur3 SINE Alu -1 148 2 7 1194 331 206 68 0 chr12 79923735 79923808 -41333722 + B1F SINE Alu 12 89 -60 7 1194 798 174 15 0 chr12 79924320 79924452 -41333078 + B1_Mur2 SINE Alu 9 142 -7 7 1194 617 141 0 0 chr12 79926048 79926140 -41331390 + B3 SINE B2 1 92 -124 7 1194 4353 94 106 4 chr12 79927431 79928123 -41329407 - Lx2B LINE L1 -1 6999 6238 7 1194 2063 133 62 6 chr12 79928581 79928921 -41328609 - RLTR15 LTR ERVK 0 359 1 7 1194 201 39 0 0 chr12 79929135 79929161 -41328369 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1194 2636 0 10 0 chr12 79929163 79929460 -41328070 - L1Md_T LINE L1 0 6582 6283 7 1194 300 264 14 0 chr12 79929596 79929668 -41327862 - ID4 SINE ID -10 73 1 7 1194 579 212 17 17 chr12 79930431 79930546 -41326984 + PB1D7 SINE Alu 6 120 0 7 1194 1497 48 11 5 chr12 79931233 79931422 -41326108 + B2_Mm2 SINE B2 2 191 -4 7 1194 237 83 0 0 chr12 79931572 79931608 -41325922 + (TTA)n Simple_repeat Simple_repeat 1 36 0 7 1194 611 271 47 11 chr12 79931612 79931802 -41325728 - B3A SINE B2 0 198 2 7 1194 302 242 140 59 chr12 79933914 79934050 -41323480 - L1M5 LINE L1 -697 5476 5330 7 1194 510 291 25 25 chr12 79934108 79934270 -41323260 - RSINE1 SINE B4 -2 163 2 7 1194 501 234 28 7 chr12 79934340 79934461 -41323069 - B1_Mur1 SINE Alu -1 119 2 7 1194 360 276 0 37 chr12 79934536 79934645 -41322885 - PB1D10 SINE Alu -11 106 2 7 1194 341 309 105 84 chr12 79934648 79935075 -41322455 - L1MC LINE L1 -979 5167 4732 7 1194 432 268 12 35 chr12 79935084 79935254 -41322276 + L1MB7 LINE L1 5812 5977 -207 7 1194 1636 21 0 0 chr12 79935273 79935459 -41322071 - B2_Mm1a SINE B2 -6 187 2 8 1194 1390 192 133 16 chr12 79935532 79935854 -41321676 - ORR1D1 LTR MaLR -14 360 1 8 1194 324 286 29 22 chr12 79935856 79935992 -41321538 + L1MB7 LINE L1 6038 6174 -4 7 1194 406 298 146 10 chr12 79936168 79936476 -41321054 - L1M5 LINE L1 -3065 3081 2732 7 1194 430 252 28 18 chr12 79937263 79937372 -41320158 + B1_Mur4 SINE Alu 20 129 -21 8 1194 233 268 155 0 chr12 79937439 79937510 -41320020 + PB1D10 SINE Alu 2 83 -34 8 1194 822 157 35 21 chr12 79937696 79937839 -41319691 - B1_Mur1 SINE Alu 0 149 5 8 1194 918 212 34 19 chr12 79937939 79938146 -41319384 - B3 SINE B2 -6 210 1 8 1194 871 172 7 0 chr12 79939179 79939324 -41318206 + B1_Mus2 SINE Alu 2 147 0 8 1194 23 33 0 0 chr12 79940570 79940600 -41316930 + AT_rich Low_complexity Low_complexity 1 30 0 8 1194 536 244 244 0 chr12 79941028 79941204 -41316326 + ID_B1 SINE B4 3 221 -3 8 1194 499 188 42 0 chr12 79941776 79941872 -41315658 - PB1D9 SINE Alu -19 101 2 8 1194 390 269 29 0 chr12 79942160 79942264 -41315266 + PB1D10 SINE Alu 1 107 -10 8 1194 234 0 0 0 chr12 79942369 79942395 -41315135 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 8 1194 320 282 155 0 chr12 79942605 79942708 -41314822 - RSINE1 SINE B4 -6 159 41 8 1194 255 61 0 0 chr12 79942750 79942783 -41314747 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1194 753 296 57 19 chr12 79942839 79943049 -41314481 + B4 SINE B4 67 284 -8 8 1194 459 0 0 0 chr12 79943155 79943206 -41314324 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1194 514 77 0 0 chr12 79945073 79945138 -41312392 - B1_Mus1 SINE Alu -82 66 2 8 1194 678 266 179 77 chr12 79945253 79945400 -41312130 - MER44B DNA MER2_type -1 549 390 8 1194 1608 43 0 26 chr12 79945400 79945590 -41311940 + B2_Mm1t SINE B2 1 185 -8 8 1194 698 266 179 77 chr12 79945590 79945938 -41311592 - MER44B DNA MER2_type -161 389 2 8 1194 283 296 86 0 chr12 79945986 79946067 -41311463 - PB1D10 SINE Alu -28 89 2 8 1194 1658 83 3 7 chr12 79946737 79946994 -41310536 + L1_Mur3 LINE L1 1173 1428 -2470 8 1194 5743 76 22 38 chr12 79946980 79947847 -41309683 + L1_Mur3 LINE L1 2310 3162 -736 8 1194 2344 93 12 6 chr12 79947847 79948172 -41309358 + L1_Mus4 LINE L1 6310 6636 0 8 1194 246 261 0 0 chr12 79948185 79948231 -41309299 + ID4_ SINE ID 2 47 -36 8 1194 21 57 0 0 chr12 79948393 79948428 -41309102 + AT_rich Low_complexity Low_complexity 1 35 0 8 1194 292 258 119 25 chr12 79949656 79949815 -41307715 - RMER15 LTR ERVL -43 532 359 8 1194 225 0 0 0 chr12 79950105 79950130 -41307400 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1194 273 254 30 0 chr12 79950139 79950206 -41307324 - ID4 SINE ID -13 70 2 8 1194 253 349 93 40 chr12 79950389 79950637 -41306893 + Tigger13a DNA MER2_type 307 567 -204 8 1194 237 256 79 79 chr12 79950893 79950982 -41306548 - PB1D9 SINE Alu 0 120 32 8 1194 1210 22 36 0 chr12 79951190 79951328 -41306202 - B1_Mus1 SINE Alu -1 147 5 8 1194 1247 103 16 37 chr12 79951646 79951689 -41305841 - B2_Mm2 SINE B2 -8 187 147 8 1194 288 0 0 0 chr12 79951689 79951721 -41305809 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1194 1247 103 16 37 chr12 79951721 79951868 -41305662 - B2_Mm2 SINE B2 -49 146 1 8 1194 190 295 33 0 chr12 79952412 79952473 -41305057 + MIR SINE MIR 136 198 -64 8 1194 1224 89 12 0 chr12 79952808 79952976 -41304554 + B2_Mm1t SINE B2 2 171 -22 8 1194 407 91 0 0 chr12 79953011 79953066 -41304464 + B2_Mm2 SINE B2 47 101 -94 8 1194 26 30 0 0 chr12 79953090 79953123 -41304407 + AT_rich Low_complexity Low_complexity 1 33 0 8 1195 1150 43 50 0 chr12 79953982 79954121 -41303409 - B1_Mm SINE Alu 0 147 2 8 1195 211 28 27 27 chr12 79954121 79954158 -41303372 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 8 1195 426 251 206 36 chr12 79954418 79954453 -41303077 - B4A SINE B4 -4 288 258 8 1195 813 47 0 0 chr12 79954453 79954559 -41302971 + (GGGGA)n Simple_repeat Simple_repeat 1 106 0 8 1195 426 251 206 36 chr12 79954559 79954746 -41302784 - B4A SINE B4 -35 257 29 8 1195 242 269 135 31 chr12 79954701 79954797 -41302733 + B3A SINE B2 108 213 -3 8 1195 314 338 76 35 chr12 79954806 79954950 -41302580 + ID_B1 SINE B4 70 219 -5 8 1195 247 339 106 9 chr12 79954972 79955085 -41302445 + PB1 SINE Alu 1 124 -3 8 1195 188 67 0 32 chr12 79955333 79955364 -41302166 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 8 1195 647 71 0 0 chr12 79955364 79955448 -41302082 + B1_Mus2 SINE Alu 1 84 -63 8 1195 304 171 307 0 chr12 79956235 79956323 -41301207 - BC1_Mm scRNA scRNA -37 115 1 8 1195 543 221 8 110 chr12 79956324 79956420 -41301110 + B1_Mur1 SINE Alu 12 106 -43 8 1195 1349 83 14 81 chr12 79956420 79956629 -41300901 + B2_Mm2 SINE B2 1 195 0 8 1195 543 221 8 110 chr12 79956629 79956659 -41300871 + B1_Mur1 SINE Alu 107 125 -24 8 1195 349 255 100 124 chr12 79956683 79956898 -41300632 + B4A SINE B4 66 282 -10 8 1195 268 316 81 20 chr12 79957062 79957259 -41300271 - L2a LINE L2 -3 3423 3215 8 1195 1536 82 0 10 chr12 79957352 79957548 -41299982 + B2_Mm2 SINE B2 2 195 0 8 1195 343 316 43 0 chr12 79957560 79957667 -41299863 + PB1D7 SINE Alu 1 118 -9 8 1195 230 382 0 26 chr12 79957975 79958053 -41299477 + ID4_ SINE ID 7 82 -1 8 1195 285 169 39 13 chr12 79958053 79958131 -41299399 + GA-rich Low_complexity Low_complexity 1 80 0 8 1195 234 0 0 0 chr12 79958339 79958365 -41299165 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1195 505 309 122 44 chr12 79958986 79959257 -41298273 + B4A SINE B4 1 292 0 8 1195 287 278 41 65 chr12 79959461 79959584 -41297946 + ID_B1 SINE B4 86 205 -19 8 1195 229 193 86 17 chr12 79959633 79959691 -41297839 - PB1D10 SINE Alu -10 107 46 8 1195 364 261 75 11 chr12 79959688 79959781 -41297749 - ID_B1 SINE B4 -118 106 8 8 1195 249 98 0 0 chr12 79959966 79960007 -41297523 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1195 1269 43 0 0 chr12 79960196 79960337 -41297193 + B1_Mus2 SINE Alu 1 141 -6 8 1195 594 247 227 67 chr12 79960495 79960929 -41296601 - MER67B LTR ERV1 -55 606 103 8 1195 364 203 27 0 chr12 79960901 79960975 -41296555 - ID4 SINE ID -3 80 5 8 1195 305 306 92 0 chr12 79961013 79961111 -41296419 - MER67B LTR ERV1 -536 125 19 8 1195 201 39 0 0 chr12 79961396 79961422 -41296108 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 1195 393 22 0 0 chr12 79961422 79961467 -41296063 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1195 321 217 286 12 chr12 79964317 79964401 -41293129 + PB1D9 SINE Alu 6 112 -8 8 1195 289 326 88 7 chr12 79965495 79965631 -41291899 + MIR SINE MIR 3 149 -113 8 1195 585 124 0 11 chr12 79965790 79965880 -41291650 - B1_Mm SINE Alu -6 141 53 8 1195 745 203 27 20 chr12 79966351 79966497 -41291033 - B1_Mus1 SINE Alu 0 148 2 8 1195 1081 212 44 10 chr12 79966539 79966744 -41290786 - B3 SINE B2 -4 212 1 8 1195 223 276 145 0 chr12 79967108 79967184 -41290346 - PB1 SINE Alu -4 123 37 8 1195 29 84 0 0 chr12 79967778 79967849 -41289681 + AT_rich Low_complexity Low_complexity 1 71 0 8 1195 908 278 69 23 chr12 79968374 79968635 -41288895 + B4 SINE B4 1 273 -19 8 1195 687 154 0 26 chr12 79968859 79968972 -41288558 - PB1D9 SINE Alu -2 118 9 8 1195 376 284 240 33 chr12 79969135 79969412 -41288118 - RLTR28B LTR ERVL -60 421 88 8 1195 699 195 23 30 chr12 79969587 79969719 -41287811 - B1_Mur3 SINE Alu -16 133 3 8 1195 664 177 88 44 chr12 79969970 79970106 -41287424 - B1_Mus2 SINE Alu -1 146 5 8 1195 1393 88 39 0 chr12 79970206 79970388 -41287142 + B2_Mm2 SINE B2 2 190 -5 8 1195 925 124 48 91 chr12 79970629 79970815 -41286715 + URR1B DNA MER1_type 36 213 -12 8 1195 363 348 132 18 chr12 79970834 79971115 -41286415 + L1MEf LINE L1 413 725 -5411 8 1195 1316 34 0 7 chr12 79971272 79971421 -41286109 + B1_Mus1 SINE Alu 1 148 0 8 1195 303 335 53 53 chr12 79971964 79972022 -41285508 - MER74B LTR ERVL -10 612 564 8 1195 1595 28 62 0 chr12 79972022 79972200 -41285330 - B2_Mm1t SINE B2 -4 189 1 8 1195 303 335 53 53 chr12 79972200 79972330 -41285200 - MER74B LTR ERVL -59 563 424 8 1195 340 324 212 12 chr12 79972466 79972707 -41284823 - MER74B LTR ERVL -232 390 102 8 1195 652 204 9 0 chr12 79972736 79972849 -41284681 + B1_Mur4 SINE Alu 14 127 -23 8 1195 316 290 87 37 chr12 79972857 79972883 -41284647 + ID_B1 SINE B4 64 145 -147 8 1195 630 118 100 0 chr12 79972883 79972993 -41284537 + B1_Mus2 SINE Alu 9 129 -18 8 1195 316 290 87 37 chr12 79972993 79973018 -41284512 + ID_B1 SINE B4 146 233 -59 8 1195 456 205 16 97 chr12 79973199 79973323 -41284207 + B3 SINE B2 95 208 -8 8 1195 495 249 24 42 chr12 79973366 79973534 -41283996 + L1MEf LINE L1 2066 2230 -4012 8 1195 385 216 92 42 chr12 79973560 79973663 -41283867 + B1_Mus1 SINE Alu 1 110 -7 8 1195 240 299 122 20 chr12 79973935 79974082 -41283448 + L1MEf LINE L1 2647 2808 -3338 8 1195 303 241 12 48 chr12 79974352 79974435 -41283095 + MT2B LTR ERVL 162 241 -360 8 1195 300 274 60 50 chr12 79974355 79974455 -41283075 + PB1D9 SINE Alu 1 101 -19 8 1195 554 301 93 12 chr12 79974499 79974852 -41282678 + L1MC LINE L1 4829 5205 -941 8 1195 481 140 24 15 chr12 79975058 79975151 -41282379 + B1_Mur4 SINE Alu 59 150 0 8 1195 241 240 2 55 chr12 79975183 79975246 -41282284 - B1F2 SINE Alu -83 66 6 8 1195 30 45 0 0 chr12 79975333 79975377 -41282153 + AT_rich Low_complexity Low_complexity 1 44 0 8 1195 622 251 54 88 chr12 79975666 79975871 -41281659 + B3A SINE B2 1 198 0 8 1195 471 200 0 34 chr12 79975908 79975996 -41281534 + B1_Mur4 SINE Alu 60 144 -6 8 1195 973 208 39 10 chr12 79976080 79976284 -41281246 - B3 SINE B2 -6 210 1 8 1195 1025 267 67 67 chr12 79976403 79976760 -41280770 + MTE2a LTR MaLR 13 369 -10 8 1195 244 348 0 0 chr12 79976908 79976977 -41280553 + MER5A1 DNA MER1_type 12 80 -86 8 1195 412 295 101 0 chr12 79977486 79977615 -41279915 - RSINE1 SINE B4 -21 144 3 8 1195 269 256 68 23 chr12 79978351 79978439 -41279091 + B4A SINE B4 78 169 -123 9 1195 583 152 19 19 chr12 79978370 79978477 -41279053 + PB1D9 SINE Alu 14 120 0 9 1195 1129 88 0 39 chr12 79978753 79978906 -41278624 - B1_Mm SINE Alu 0 147 1 9 1195 331 317 19 100 chr12 79979654 79979864 -41277666 - L1M5 LINE L1 -583 5657 5465 9 1195 194 316 53 0 chr12 79980266 79980323 -41277207 + L2b LINE L2 3125 3184 -191 9 1195 713 172 138 99 chr12 79980577 79980758 -41276772 - B2_Mm2 SINE B2 -5 190 3 9 1195 873 99 146 18 chr12 79981543 79981707 -41275823 + URR1A DNA MER1_type 39 223 -3 9 1195 412 278 11 0 chr12 79981916 79982006 -41275524 + RSINE1 SINE B4 1 91 -74 9 1195 1186 225 44 42 chr12 79982495 79982916 -41274614 - RLTR33 LTR ERVK -34 644 186 9 1195 246 290 48 16 chr12 79982979 79983042 -41274488 + B3A SINE B2 1 65 -133 9 1195 592 196 0 0 chr12 79983335 79983432 -41274098 + B1_Mur2 SINE Alu 1 97 -52 9 1195 1103 208 68 0 chr12 79983442 79983634 -41273896 - B3 SINE B2 -11 205 1 9 1195 1294 264 89 14 chr12 79983758 79984108 -41273422 + MTE2b LTR MaLR 1 376 -3 9 1195 361 284 0 31 chr12 79984437 79984535 -41272995 - ID_B1 SINE B4 0 224 130 9 1195 386 277 131 28 chr12 79984805 79984950 -41272580 + RSINE1 SINE B4 2 161 -4 9 1195 300 293 12 24 chr12 79984974 79985058 -41272472 + B1F SINE Alu 1 83 -66 9 1195 236 277 14 84 chr12 79985225 79985242 -41272288 + B4 SINE B4 74 85 -207 9 1195 292 225 79 50 chr12 79985242 79985347 -41272183 + B1F2 SINE Alu 2 115 -2 9 1195 204 40 0 0 chr12 79986715 79986740 -41270790 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1195 425 305 17 8 chr12 79987016 79987135 -41270395 + PB1 SINE Alu 1 120 -7 9 1195 972 161 12 6 chr12 79987309 79987478 -41270052 - URR1B DNA MER1_type 0 225 56 9 1195 619 195 76 23 chr12 79987504 79987635 -41269895 + B1_Mur1 SINE Alu 2 139 -10 9 1195 306 293 12 12 chr12 79987734 79987817 -41269713 + ID4_ SINE ID 1 83 0 9 1195 427 193 339 0 chr12 79987897 79988006 -41269524 + B1_Mus1 SINE Alu 1 146 -2 9 1195 402 196 336 0 chr12 79988014 79988121 -41269409 + B1_Mur3 SINE Alu 1 143 -6 9 1195 21 0 0 0 chr12 79988698 79988719 -41268811 + AT_rich Low_complexity Low_complexity 1 21 0 9 1195 25 0 0 0 chr12 79989211 79989236 -41268294 + AT_rich Low_complexity Low_complexity 1 25 0 9 1195 25 0 0 0 chr12 79989386 79989411 -41268119 + AT_rich Low_complexity Low_complexity 1 25 0 9 1195 358 216 108 0 chr12 79990017 79990091 -41267439 - ID2 SINE ID 0 83 2 9 1195 562 224 344 12 chr12 79991743 79991906 -41265624 + ID_B1 SINE B4 3 219 -5 9 1195 1210 88 0 0 chr12 79991910 79992058 -41265472 + B1_Mus1 SINE Alu 1 148 0 9 1195 1907 171 8 31 chr12 79992219 79992574 -41264956 + ORR1B1 LTR MaLR 41 387 -7 9 1195 276 280 0 13 chr12 79993463 79993539 -41263991 + ID4_ SINE ID 1 75 -8 9 1195 948 164 91 71 chr12 79993563 79993760 -41263770 + B3 SINE B2 1 201 -15 9 1195 21 0 0 0 chr12 79993780 79993801 -41263729 + AT_rich Low_complexity Low_complexity 1 21 0 9 1195 1765 173 92 0 chr12 79994335 79994670 -41262860 + ORR1B1 LTR MaLR 1 366 -28 9 1195 579 133 11 0 chr12 79994662 79994752 -41262778 + B1_Mm SINE Alu 57 147 0 9 1195 276 164 0 52 chr12 79994773 79994831 -41262699 + ORR1B1 LTR MaLR 324 378 0 9 1195 233 301 68 14 chr12 79996605 79996679 -41260851 + L2a LINE L2 3328 3405 -21 9 1195 224 308 65 43 chr12 79997433 79997572 -41259958 - L3 LINE CR1 -90 4399 4258 9 1195 315 0 0 0 chr12 79998251 79998286 -41259244 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1195 644 180 107 0 chr12 79998724 79998846 -41258684 - B1_Mus2 SINE Alu -7 140 6 9 1195 1589 193 25 0 chr12 79998963 79999248 -41258282 + ORR1C1 LTR MaLR 1 292 -86 9 1195 484 219 0 87 chr12 79999228 79999343 -41258187 - PB1D7 SINE Alu -14 106 2 9 1195 252 222 7 182 chr12 79999343 79999390 -41258140 - MT2B2 LTR ERVL -435 149 128 9 1195 1729 26 11 0 chr12 79999541 79999730 -41257800 - B2_Mm1t SINE B2 -2 191 1 9 1195 1403 96 11 11 chr12 79999736 79999926 -41257604 - B2_Mm1t SINE B2 -2 191 2 9 1195 401 0 20 0 chr12 80000020 80000069 -41257461 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1195 317 84 42 14 chr12 80000070 80000142 -41257388 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1195 556 229 121 1 chr12 80000142 80000280 -41257250 - B3A SINE B2 -51 165 14 3 1195 411 288 47 31 chr12 80000300 80000317 -41257213 - ID_B1 SINE B4 -7 217 87 4 1195 623 214 18 0 chr12 80000317 80000429 -41257101 - B1_Mur1 SINE Alu -30 119 6 5 1195 234 116 186 0 chr12 80000395 80000438 -41257092 - RMER6B LTR ERVK -346 115 65 6 1195 1201 56 0 0 chr12 80000465 80000609 -41256921 - B1_Mus1 SINE Alu 0 148 5 7 1195 291 256 142 22 chr12 80000846 80000982 -41256548 - MIRb SINE MIR -26 182 40 8 1195 226 238 46 31 chr12 80001445 80001510 -41256020 - ID4 SINE ID -10 73 8 9 1195 317 270 47 16 chr12 80001533 80001661 -41255869 - L1ME4a LINE L1 -57 6067 5936 1 1195 242 218 77 0 chr12 80001661 80001739 -41255791 + (TATATG)n Simple_repeat Simple_repeat 2 85 0 1 1195 344 191 15 0 chr12 80001746 80001810 -41255720 - PB1D10 SINE Alu -3 114 50 1 1195 530 272 2 7 chr12 80001810 80001932 -41255598 + B1_Mur1 SINE Alu 3 120 0 1 1195 432 0 0 0 chr12 80001965 80002013 -41255517 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1195 236 288 91 0 chr12 80002014 80002080 -41255450 - ID SINE ID -152 72 1 1 1195 23 33 0 0 chr12 80002080 80002110 -41255420 + AT_rich Low_complexity Low_complexity 1 30 0 1 1195 218 222 22 0 chr12 80002138 80002183 -41255347 - ID4 SINE ID -19 64 19 1 1195 335 247 167 49 chr12 80002209 80002311 -41255219 - PB1D10 SINE Alu -1 116 3 1 1195 609 153 95 44 chr12 80002367 80002504 -41255026 - B2_Mm2 SINE B2 -5 190 47 1 1195 346 237 26 0 chr12 80002536 80002612 -41254918 + ID4 SINE ID 3 80 -3 2 1195 839 216 52 52 chr12 80002815 80003006 -41254524 + ID_B1 SINE B4 1 191 -33 2 1195 251 167 217 0 chr12 80003073 80003133 -41254397 + PB1D7 SINE Alu 46 118 -2 2 1195 428 210 109 10 chr12 80003511 80003612 -41253918 + PB1D9 SINE Alu 2 112 -8 2 1195 1493 48 5 31 chr12 80003626 80003820 -41253710 + B2_Mm2 SINE B2 2 190 -5 2 1195 1229 55 0 0 chr12 80003830 80003975 -41253555 + B1_Mus2 SINE Alu 1 145 -2 2 1195 489 58 0 0 chr12 80003975 80004044 -41253486 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 2 1195 1081 265 77 64 chr12 80004055 80004446 -41253084 + MLT1C LTR MaLR 1 396 -71 2 1195 1359 262 37 40 chr12 80004491 80004865 -41252665 + MTEa LTR MaLR 1 373 -6 2 1195 368 158 79 0 chr12 80005008 80005084 -41252446 - PB1D10 SINE Alu -1 116 35 2 1195 254 188 426 0 chr12 80005084 80005109 -41252421 - ID_B1 SINE B4 -1 223 80 3 1195 778 235 84 10 chr12 80005147 80005349 -41252181 + ID_B1 SINE B4 8 224 0 3 1195 207 88 0 0 chr12 80005349 80005383 -41252147 + (CAAAAA)n Simple_repeat Simple_repeat 5 38 0 3 1195 531 0 0 0 chr12 80005524 80005583 -41251947 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1195 728 206 0 12 chr12 80006611 80006783 -41250747 + (CATATA)n Simple_repeat Simple_repeat 4 173 0 3 1195 216 246 29 14 chr12 80006789 80006859 -41250671 + (CATA)n Simple_repeat Simple_repeat 2 72 0 3 1195 377 86 17 0 chr12 80007136 80007194 -41250336 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1195 673 236 114 38 chr12 80007269 80007533 -41249997 - L1MA5 LINE L1 -8 6292 6009 3 1195 447 0 48 0 chr12 80007566 80007629 -41249901 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1195 234 324 14 0 chr12 80007629 80007700 -41249830 - ID4 SINE ID -11 72 1 3 1195 21 0 0 0 chr12 80008396 80008417 -41249113 + AT_rich Low_complexity Low_complexity 1 21 0 4 1195 295 200 35 70 chr12 80009582 80009668 -41247862 - ORR1E LTR MaLR -182 177 95 4 1195 394 186 1 1 chr12 80009838 80009904 -41247626 - PB1D10 SINE Alu -5 144 48 4 1195 723 152 192 83 chr12 80009904 80010097 -41247433 + B3 SINE B2 3 216 0 4 1195 364 260 45 75 chr12 80010097 80010163 -41247367 - B1F1 SINE Alu -75 74 16 4 1195 213 286 0 67 chr12 80010464 80010524 -41247006 + ID4 SINE ID 26 81 -2 4 1195 989 149 0 0 chr12 80010738 80010886 -41246644 + B1_Mus1 SINE Alu 1 148 0 4 1195 232 330 101 28 chr12 80011001 80011110 -41246420 + Tigger5 DNA MER2_type 3 119 -2287 4 1195 256 94 38 0 chr12 80011128 80011181 -41246349 + (TTTTTG)n Simple_repeat Simple_repeat 4 58 0 4 1195 469 278 59 15 chr12 80011193 80011328 -41246202 - B1F SINE Alu 0 149 9 4 1195 267 298 0 0 chr12 80011429 80011486 -41246044 + Tigger5 DNA MER2_type 2347 2403 -3 4 1195 200 205 0 0 chr12 80011490 80011529 -41246001 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 4 1195 396 259 119 28 chr12 80013236 80013379 -41244151 + MER96 DNA hAT 20 175 0 5 1195 937 205 52 24 chr12 80013690 80013900 -41243630 - B3 SINE B2 0 216 1 5 1195 464 165 294 0 chr12 80014066 80014175 -41243355 - B1_Mus1 SINE Alu -1 147 7 5 1195 728 123 16 0 chr12 80014205 80014327 -41243203 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 5 1195 1280 93 59 16 chr12 80014327 80014513 -41243017 - B2_Mm2 SINE B2 -1 194 1 5 1195 248 323 82 8 chr12 80014690 80014824 -41242706 + B1F1 SINE Alu 1 144 -5 5 1195 342 273 26 35 chr12 80014712 80014826 -41242704 + ID_B1 SINE B4 109 221 -3 5 1195 1442 214 94 52 chr12 80014860 80015244 -41242286 + MTD LTR MaLR 8 407 -12 5 1195 554 256 182 23 chr12 80015254 80015474 -41242056 + B4A SINE B4 36 290 -2 5 1195 222 37 0 0 chr12 80015507 80015534 -41241996 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1195 248 325 153 57 chr12 80015708 80015771 -41241759 - Tigger15a DNA TcMar -292 423 364 6 1195 1223 103 15 61 chr12 80015771 80015968 -41241562 - B2_Mm2 SINE B2 -6 189 2 6 1195 248 325 153 57 chr12 80015968 80016152 -41241378 - Tigger15a DNA TcMar -352 363 152 6 1195 842 247 120 8 chr12 80016203 80016444 -41241086 + B4 SINE B4 1 268 -24 6 1195 567 78 0 0 chr12 80016446 80016523 -41241007 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 1195 509 303 147 56 chr12 80016605 80016871 -41240659 + MER74A LTR ERVL 67 356 -202 6 1195 216 0 0 0 chr12 80017127 80017151 -41240379 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1195 927 150 7 0 chr12 80017151 80017291 -41240239 - B1_Mur4 SINE Alu -7 143 3 6 1195 777 170 84 6 chr12 80017351 80017517 -41240013 + B3A SINE B2 2 180 -18 6 1195 542 192 0 39 chr12 80017555 80017658 -41239872 - B1_Mur1 SINE Alu -2 147 49 6 1195 520 206 29 0 chr12 80017657 80017759 -41239771 - B3 SINE B2 -7 209 105 6 1195 509 248 0 0 chr12 80017900 80018001 -41239529 - B1F SINE Alu -1 148 48 7 1195 613 242 0 0 chr12 80018155 80018279 -41239251 - RSINE1 SINE B4 -39 126 3 7 1195 1150 68 0 7 chr12 80018343 80018491 -41239039 + B1_Mus2 SINE Alu 1 147 0 7 1195 806 174 20 40 chr12 80018578 80018728 -41238802 - B1_Mur3 SINE Alu 0 149 3 7 1195 699 231 1 9 chr12 80018729 80018882 -41238648 - B1_Mur1 SINE Alu -2 147 1 7 1195 1072 46 0 0 chr12 80018895 80019026 -41238504 - B1_Mus1 SINE Alu 0 148 18 7 1195 415 222 8 8 chr12 80019214 80019332 -41238198 + GA-rich Low_complexity Low_complexity 3 120 0 7 1195 268 337 72 32 chr12 80019786 80020065 -41237465 + B4A SINE B4 1 290 -2 7 1195 531 257 29 23 chr12 80020866 80021047 -41236483 - B3A SINE B2 -11 182 2 7 1195 366 191 41 82 chr12 80021424 80021521 -41236009 - PB1D10 SINE Alu -7 110 18 7 1195 454 218 181 25 chr12 80021526 80021686 -41235844 + B3A SINE B2 1 185 -13 8 1195 222 156 0 0 chr12 80021692 80021737 -41235793 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1195 229 354 25 0 chr12 80021798 80021877 -41235653 + ID2 SINE ID 2 82 -1 8 1195 567 280 20 41 chr12 80021895 80022094 -41235436 + B3A SINE B2 3 197 -1 8 1195 470 330 62 17 chr12 80022226 80022405 -41235125 - MIRc SINE MIR -32 236 50 8 1195 905 260 124 16 chr12 80022723 80023053 -41234477 - MLT1C LTR MaLR -71 396 12 8 1195 632 147 37 155 chr12 80023550 80023577 -41233953 - B1_Mur4 SINE Alu 0 150 127 8 1195 333 0 0 0 chr12 80023577 80023614 -41233916 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1195 632 147 37 155 chr12 80023614 80023747 -41233783 - B1_Mur4 SINE Alu -24 126 9 8 1195 601 291 27 27 chr12 80023783 80023967 -41233563 - B3A SINE B2 -14 184 1 8 1195 23 33 0 0 chr12 80024032 80024062 -41233468 + AT_rich Low_complexity Low_complexity 1 30 0 8 1195 225 0 0 0 chr12 80024085 80024110 -41233420 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1195 1217 99 47 6 chr12 80024111 80024283 -41233247 - B2_Mm2 SINE B2 -15 180 2 9 1195 331 295 27 0 chr12 80024308 80024420 -41233110 - PB1D10 SINE Alu -2 115 1 9 1195 446 254 27 0 chr12 80024452 80024562 -41232968 + PB1D9 SINE Alu 1 113 -7 9 1195 261 0 0 0 chr12 80025004 80025033 -41232497 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1195 648 185 0 0 chr12 80025149 80025306 -41232224 + (TG)n Simple_repeat Simple_repeat 1 157 0 9 1195 227 161 214 0 chr12 80025498 80025554 -41231976 - B1F SINE Alu -8 141 74 9 1195 290 271 34 34 chr12 80025616 80025704 -41231826 - B1F SINE Alu -20 129 42 9 1195 565 250 9 0 chr12 80025787 80025903 -41231627 + PB1D9 SINE Alu 2 118 -2 9 1195 521 291 22 0 chr12 80025931 80026065 -41231465 + ID_B1 SINE B4 88 224 0 9 1195 373 268 43 35 chr12 80026080 80026196 -41231334 + PB1D10 SINE Alu 1 117 0 1 1195 1099 93 0 0 chr12 80026244 80026384 -41231146 - B1_Mus1 SINE Alu -8 140 1 1 1195 229 203 203 0 chr12 80026594 80026658 -41230872 + PB1D10 SINE Alu 41 117 0 1 1195 1705 16 5 0 chr12 80026744 80026935 -41230595 - B2_Mm1a SINE B2 -1 192 1 1 1195 479 185 17 0 chr12 80027270 80027389 -41230141 - Lx9 LINE L1 -15 7629 7509 1 1195 243 146 0 0 chr12 80027546 80027587 -41229943 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1195 1064 80 0 21 chr12 80027632 80027772 -41229758 + B1_Mus1 SINE Alu 3 139 -9 1 1195 1125 116 35 6 chr12 80027809 80027982 -41229548 + B2_Mm1t SINE B2 2 179 -14 1 1195 246 152 0 21 chr12 80027987 80028034 -41229496 + B2_Mm2 SINE B2 47 92 -103 1 1195 224 241 16 49 chr12 80028835 80028896 -41228634 - ID_B1 SINE B4 -88 136 78 1 1195 307 316 113 0 chr12 80028896 80029029 -41228501 - L2 LINE L2 -534 2885 2738 1 1195 282 143 0 0 chr12 80029130 80029179 -41228351 + (GGA)n Simple_repeat Simple_repeat 1 49 0 1 1195 214 167 0 0 chr12 80029769 80029805 -41227725 - PB1D10 SINE Alu -37 80 45 1 1195 215 241 214 0 chr12 80029841 80029931 -41227599 + MIRb SINE MIR 17 124 -152 1 1195 811 150 8 0 chr12 80030086 80030219 -41227311 - B1_Mur4 SINE Alu -16 134 1 1 1195 330 341 56 16 chr12 80030592 80030717 -41226813 - HAL1-3A_ME LINE L1 -754 2104 1975 1 1195 468 294 105 68 chr12 80030756 80030975 -41226555 - B4A SINE B4 -15 277 51 1 1195 355 275 33 72 chr12 80030982 80031135 -41226395 - B1F SINE Alu -2 147 1 1 1195 339 283 68 39 chr12 80031141 80031244 -41226286 - PB1D10 SINE Alu -2 115 10 1 1195 415 241 87 26 chr12 80031328 80031443 -41226087 + PB1 SINE Alu 3 124 -3 1 1195 243 298 164 0 chr12 80031559 80031615 -41225915 - MIR SINE MIR -68 140 72 1 1195 293 0 0 26 chr12 80031615 80031653 -41225877 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1195 243 298 164 0 chr12 80031653 80031700 -41225830 - MIR SINE MIR -137 71 21 1 1195 321 231 116 42 chr12 80031722 80031817 -41225713 - MLT1K LTR MaLR -8 587 486 1 1195 598 233 17 4 chr12 80031897 80032021 -41225509 + B1_Mur1 SINE Alu 13 140 -9 1 1195 361 275 22 99 chr12 80032068 80032170 -41225360 + PB1D10 SINE Alu 1 96 -24 1 1195 735 71 0 0 chr12 80032170 80032268 -41225262 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 1 1195 1112 52 7 0 chr12 80032268 80032403 -41225127 - B1_Mus1 SINE Alu -12 136 1 1 1195 331 258 27 118 chr12 80032403 80032429 -41225101 + PB1D7 SINE Alu 97 117 -3 1 1195 329 0 24 0 chr12 80032485 80032526 -41225004 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1195 274 342 45 52 chr12 80033322 80033476 -41224054 - B4A SINE B4 -58 234 82 1 1195 877 167 0 20 chr12 80033497 80033644 -41223886 + B1_Mur4 SINE Alu 5 148 -2 1 1195 356 261 113 0 chr12 80033686 80033801 -41223729 + B1F1 SINE Alu 21 148 -1 1 1195 419 212 69 29 chr12 80033804 80033906 -41223624 + RSINE1 SINE B4 9 114 -51 1 1195 198 118 0 0 chr12 80033908 80033942 -41223588 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1195 451 0 34 0 chr12 80033994 80034053 -41223477 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1195 474 285 151 18 chr12 80034431 80034791 -41222739 + MLT2B4 LTR ERVL 1 401 -13 1 1195 1065 90 7 0 chr12 80034831 80034975 -41222555 - B1_Mus1 SINE Alu -3 145 1 1 1195 29 28 0 0 chr12 80034980 80035016 -41222514 + AT_rich Low_complexity Low_complexity 1 36 0 1 1195 602 190 60 104 chr12 80035086 80035268 -41222262 + RLTR28B LTR ERVL 3 176 -305 1 1195 1271 250 173 44 chr12 80035271 80035648 -41221882 + RMER4B LTR ERVK 17 464 -121 1 1195 1238 41 0 20 chr12 80035648 80035798 -41221732 - B1_Mus2 SINE Alu 0 147 1 1 1195 1271 250 173 44 chr12 80035798 80035906 -41221624 + RMER4B LTR ERVK 465 570 -15 1 1195 282 56 0 0 chr12 80035906 80035942 -41221588 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1195 1271 250 173 44 chr12 80035942 80035957 -41221573 + RMER4B LTR ERVK 571 583 -2 1 1195 674 83 0 0 chr12 80035971 80036067 -41221463 + RLTR28B LTR ERVL 164 259 -222 1 1195 528 257 52 77 chr12 80036159 80036353 -41221177 + RLTR28B LTR ERVL 1 189 -292 1 1195 2264 116 22 30 chr12 80036461 80036824 -41220706 - RLTR14 LTR ERV1 -19 363 4 1 1195 485 274 18 78 chr12 80036860 80037026 -41220504 + B4A SINE B4 117 272 -20 1 1195 432 0 0 0 chr12 80037409 80037457 -41220073 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1195 270 81 0 0 chr12 80038013 80038050 -41219480 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 1 1195 1515 115 123 17 chr12 80038050 80038342 -41219188 + RMER1B Other Other 744 1066 0 1 1195 186 189 0 0 chr12 80038347 80038384 -41219146 + GA-rich Low_complexity Low_complexity 2 38 0 1 1195 207 234 0 21 chr12 80038412 80038460 -41219070 + CT-rich Low_complexity Low_complexity 2 48 0 1 1195 186 43 0 0 chr12 80038466 80038489 -41219041 + (CCCA)n Simple_repeat Simple_repeat 2 24 0 1 1195 792 157 15 7 chr12 80038497 80038632 -41218898 - B1_Mur3 SINE Alu -13 136 1 1 1195 468 253 0 0 chr12 80038674 80038761 -41218769 + B3A SINE B2 88 174 -24 1 1195 267 230 24 187 chr12 80039726 80039759 -41217771 + MT2B LTR ERVL 135 237 -364 1 1195 354 259 0 100 chr12 80039759 80039849 -41217681 + B1_Mus1 SINE Alu 1 81 -67 1 1195 386 236 76 114 chr12 80039802 80039960 -41217570 + B4A SINE B4 70 221 -71 1 1195 946 50 0 16 chr12 80039845 80039968 -41217562 + B1_Mus1 SINE Alu 28 148 0 1 1195 894 157 6 11 chr12 80039974 80040154 -41217376 + GA-rich Low_complexity Low_complexity 2 180 0 1 1195 805 276 24 68 chr12 80040553 80040802 -41216728 + MER21B LTR ERV1 13 250 -613 1 1195 263 370 99 33 chr12 80040954 80041105 -41216425 + MER21B LTR ERV1 548 708 -155 1 1195 375 155 58 18 chr12 80041348 80041519 -41216011 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1195 213 105 80 23 chr12 80041555 80041643 -41215887 + (CA)n Simple_repeat Simple_repeat 1 93 0 1 1195 207 0 0 0 chr12 80041645 80041668 -41215862 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1195 349 168 57 13 chr12 80041669 80041826 -41215704 + (CA)n Simple_repeat Simple_repeat 1 164 0 1 1195 583 88 28 50 chr12 80041874 80042053 -41215477 + (CA)n Simple_repeat Simple_repeat 1 175 0 1 1195 207 100 0 0 chr12 80042055 80042085 -41215445 + (CTATA)n Simple_repeat Simple_repeat 2 31 0 1 1195 283 87 42 28 chr12 80042081 80042152 -41215378 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1195 1356 52 0 0 chr12 80042190 80042442 -41215088 + (CTGTG)n Simple_repeat Simple_repeat 1 252 0 1 1195 1032 198 38 24 chr12 80042478 80042690 -41214840 + B3 SINE B2 2 216 0 1 1195 547 308 98 49 chr12 80042707 80043026 -41214504 - MLT1A1 LTR MaLR -32 376 11 1 1195 239 312 75 11 chr12 80043232 80043326 -41214204 + MIR3 SINE MIR 109 208 0 1 1195 471 214 0 27 chr12 80044441 80044590 -41212940 + C-rich Low_complexity Low_complexity 1 145 0 1 1195 967 265 10 0 chr12 80044592 80044788 -41212742 - ID_B1 SINE B4 -21 203 6 1 1195 196 292 61 15 chr12 80044883 80044949 -41212581 - MIRb SINE MIR -141 127 59 1 1195 194 91 0 29 chr12 80044994 80045028 -41212502 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 1 1195 268 243 45 21 chr12 80045370 80045480 -41212050 + AluF_3 SINE Alu 11 209 -102 1 1195 261 0 0 0 chr12 80046125 80046154 -41211376 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1195 334 319 52 44 chr12 80046181 80046368 -41211162 + ID_B1 SINE B4 81 292 0 1 1195 310 332 52 61 chr12 80046393 80046497 -41211033 + MIR SINE MIR 6 105 -157 1 1195 270 0 0 0 chr12 80046497 80046527 -41211003 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1195 310 332 52 61 chr12 80046527 80046653 -41210877 + MIR SINE MIR 106 234 -28 1 1195 594 185 0 9 chr12 80047521 80047630 -41209900 - B1_Mus1 SINE Alu -1 147 40 1 1195 968 260 13 25 chr12 80047996 80048229 -41209301 + B4A SINE B4 1 230 -62 1 1195 705 254 134 11 chr12 80048229 80048416 -41209114 + B3 SINE B2 2 211 -5 1 1195 325 229 0 54 chr12 80049076 80049150 -41208380 - L2a LINE L2 -5 3421 3352 1 1195 1090 147 21 16 chr12 80049216 80049409 -41208121 - B2_Mm2 SINE B2 0 195 2 1 1195 186 43 0 0 chr12 80049409 80049432 -41208098 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1195 1235 49 0 0 chr12 80049437 80049580 -41207950 - B1_Mus1 SINE Alu -5 143 1 1 1195 504 0 0 0 chr12 80049603 80049659 -41207871 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1195 642 295 51 50 chr12 80049666 80049969 -41207561 - B4 SINE B4 -16 276 3 1 1195 288 53 0 0 chr12 80050069 80050107 -41207423 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1195 1284 14 7 0 chr12 80050108 80050254 -41207276 - B1_Mus2 SINE Alu 0 147 1 1 1195 359 276 23 38 chr12 80050534 80050666 -41206864 + MLT1A1 LTR MaLR 279 408 0 1 1195 716 168 143 15 chr12 80050788 80050921 -41206609 - B1_Mur4 SINE Alu 0 150 1 1 1195 510 17 0 0 chr12 80050930 80050989 -41206541 + (TCC)n Simple_repeat Simple_repeat 3 61 0 1 1195 1269 180 0 54 chr12 80051887 80052110 -41205420 - B3 SINE B2 -5 211 1 1 1195 360 241 0 46 chr12 80052179 80052266 -41205264 - RSINE1 SINE B4 -80 85 3 1 1195 199 238 97 114 chr12 80052383 80052497 -41205033 + MIRc SINE MIR 81 192 -76 1 1195 801 150 8 8 chr12 80052633 80052767 -41204763 + B1_Mur1 SINE Alu 5 138 -11 1 1195 1074 30 0 0 chr12 80052768 80052902 -41204628 + (TAGA)n Simple_repeat Simple_repeat 2 135 0 1 1195 492 18 0 0 chr12 80052936 80052993 -41204537 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1 1195 304 119 17 17 chr12 80053009 80053069 -41204461 + GA-rich Low_complexity Low_complexity 1 60 0 1 1195 316 279 87 32 chr12 80053079 80053205 -41204325 - MIRb SINE MIR -39 229 97 1 1195 330 26 0 0 chr12 80054132 80054171 -41203359 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1195 1224 120 16 0 chr12 80054188 80054372 -41203158 + B2_Mm1a SINE B2 1 187 -6 2 1195 656 317 32 68 chr12 80054871 80055091 -41202439 + ID_B1 SINE B4 13 224 0 2 1195 7860 220 53 34 chr12 80055129 80056933 -41200597 + Lx6 LINE L1 5606 7442 -18 2 1195 839 208 0 0 chr12 80056949 80057098 -41200432 - B1_Mur4 SINE Alu 0 150 2 2 1195 203 125 0 24 chr12 80057117 80057158 -41200372 + (GGAGAA)n Simple_repeat Simple_repeat 6 45 0 2 1195 244 304 56 87 chr12 80057838 80057866 -41199664 - MIRb SINE MIR -146 122 100 1 1195 2265 144 40 5 chr12 80057866 80058237 -41199293 - ORR1C2 LTR MaLR 0 384 1 2 1195 244 304 56 87 chr12 80058237 80058334 -41199196 - MIRb SINE MIR -169 99 1 1 1195 316 309 149 36 chr12 80058752 80058920 -41198610 + ORR1E LTR MaLR 19 205 -154 2 1195 273 275 24 48 chr12 80059392 80059407 -41198123 + B4 SINE B4 69 81 -211 2 1195 529 254 77 35 chr12 80059407 80059550 -41197980 + B1F SINE Alu 1 149 0 2 1195 245 264 74 21 chr12 80060362 80060469 -41197061 + PB1 SINE Alu 1 124 -3 2 1195 672 230 0 0 chr12 80060509 80060635 -41196895 + B1_Mur2 SINE Alu 2 127 -22 2 1195 1075 52 0 0 chr12 80061052 80061186 -41196344 + B1_Mm SINE Alu 14 147 0 2 1195 375 130 0 0 chr12 80061186 80061263 -41196267 + (A)n Simple_repeat Simple_repeat 1 77 0 2 1195 1063 259 22 62 chr12 80061293 80061569 -41195961 + B4 SINE B4 26 290 -2 2 1195 1050 109 7 26 chr12 80061692 80061843 -41195687 - B1_Mur3 SINE Alu 0 149 2 2 1195 366 118 0 0 chr12 80062140 80062191 -41195339 - B1_Mur4 SINE Alu -8 142 92 2 1195 268 261 65 43 chr12 80062191 80062227 -41195303 - ID_B1 SINE B4 -3 216 128 2 1195 7615 85 35 16 chr12 80066650 80067748 -41189782 + Lx3A LINE L1 5864 6981 0 2 1195 21 36 0 0 chr12 80067750 80067778 -41189752 + AT_rich Low_complexity Low_complexity 1 28 0 2 1195 312 211 14 0 chr12 80067778 80067849 -41189681 - L1MB4 LINE L1 -77 6103 6032 2 1195 571 216 114 7 chr12 80067895 80068032 -41189498 + ID_B1 SINE B4 72 222 -2 2 1195 255 346 9 0 chr12 80068306 80068413 -41189117 - L1M3 LINE L1 -482 5698 5591 2 1195 455 246 123 0 chr12 80068417 80068539 -41188991 + B3 SINE B2 46 182 -34 2 1195 315 236 172 0 chr12 80068538 80068629 -41188901 - ID_B1 SINE B4 -47 177 72 2 1195 279 93 0 167 chr12 80068917 80069007 -41188523 + (TCTCTG)n Simple_repeat Simple_repeat 5 79 0 2 1195 599 214 0 25 chr12 80069490 80069610 -41187920 + PB1D10 SINE Alu 1 117 0 2 1195 682 262 16 43 chr12 80069618 80069805 -41187725 + ID_B1 SINE B4 24 205 -19 2 1195 219 202 12 25 chr12 80069820 80069901 -41187629 + GA-rich Low_complexity Low_complexity 4 83 0 2 1195 222 118 0 0 chr12 80070411 80070445 -41187085 + (TCC)n Simple_repeat Simple_repeat 3 36 0 2 1195 757 278 50 0 chr12 80071046 80071287 -41186243 + L1MA6 LINE L1 6043 6295 -5 2 1195 836 226 33 33 chr12 80071298 80071508 -41186022 - ID_B1 SINE B4 -14 210 1 2 1195 36 23 0 0 chr12 80071520 80071563 -41185967 + AT_rich Low_complexity Low_complexity 1 43 0 2 1195 191 313 133 51 chr12 80071705 80071863 -41185667 + L2 LINE L2 2740 2910 -509 2 1195 714 275 18 50 chr12 80072455 80072673 -41184857 + B3 SINE B2 4 214 -2 2 1195 338 204 0 11 chr12 80073309 80073403 -41184127 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 1195 333 319 0 17 chr12 80073436 80073554 -41183976 + (TG)n Simple_repeat Simple_repeat 1 116 0 2 1195 311 280 13 0 chr12 80073554 80073629 -41183901 - ID4 SINE ID -6 77 2 2 1195 450 168 157 10 chr12 80074669 80074771 -41182759 + PB1D9 SINE Alu 1 117 -3 2 1195 561 30 0 0 chr12 80074780 80074847 -41182683 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 1195 360 0 0 0 chr12 80075135 80075175 -41182355 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1195 303 324 25 11 chr12 80075436 80075575 -41181955 - MIR SINE MIR -93 183 34 2 1195 217 298 50 0 chr12 80076351 80076512 -41181018 + (CATCC)n Simple_repeat Simple_repeat 5 173 0 2 1195 222 265 0 0 chr12 80076638 80076706 -41180824 + (TGGA)n Simple_repeat Simple_repeat 4 71 0 2 1195 21 89 0 0 chr12 80076810 80076866 -41180664 + AT_rich Low_complexity Low_complexity 1 56 0 2 1195 234 208 0 0 chr12 80077368 80077421 -41180109 + CT-rich Low_complexity Low_complexity 1 53 0 2 1195 318 156 92 15 chr12 80077426 80077491 -41180039 - PB1D10 SINE Alu 0 117 48 2 1195 240 216 149 0 chr12 80077582 80077656 -41179874 - B1_Mus2 SINE Alu -61 86 2 2 1195 823 144 239 16 chr12 80079341 80079525 -41178005 - URR1B DNA MER1_type 0 225 1 2 1195 486 267 35 0 chr12 80079597 80079713 -41177817 + PB1D9 SINE Alu 1 120 0 2 1195 240 35 0 0 chr12 80079741 80079770 -41177760 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1195 329 329 0 0 chr12 80079925 80080004 -41177526 - ID4 SINE ID 0 83 5 2 1195 6549 48 10 33 chr12 80080025 80080803 -41176727 + MusHAL1 LINE L1 1813 2573 -139 2 1195 549 111 212 0 chr12 80080803 80080902 -41176628 - PB1D9 SINE Alu 0 120 1 2 1195 6549 48 10 33 chr12 80080902 80081042 -41176488 + MusHAL1 LINE L1 2574 2710 -2 2 1195 940 136 7 13 chr12 80082135 80082284 -41175246 + B1_Mur4 SINE Alu 1 148 -2 2 1195 216 0 0 0 chr12 80082289 80082313 -41175217 + (CCA)n Simple_repeat Simple_repeat 3 26 0 2 1195 1048 69 8 0 chr12 80082591 80082722 -41174808 + B1_Mus1 SINE Alu 5 136 -12 2 1195 321 93 0 0 chr12 80082722 80082776 -41174754 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1195 480 214 24 89 chr12 80083820 80083943 -41173587 + PB1D10 SINE Alu 1 115 -2 2 1195 516 255 58 2 chr12 80083943 80083968 -41173562 + ID_B1 SINE B4 82 248 -44 2 1195 189 0 0 0 chr12 80083993 80084014 -41173516 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1195 243 0 0 0 chr12 80084074 80084101 -41173429 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1195 279 0 0 0 chr12 80084101 80084131 -41173399 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1195 409 292 103 26 chr12 80084136 80084368 -41173162 - MER21B LTR ERV1 -114 749 500 2 1195 324 0 0 0 chr12 80084805 80084841 -41172689 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1196 374 43 0 0 chr12 80085507 80085554 -41171976 + L1_Mur1 LINE L1 5833 5879 -7 2 1196 2524 168 59 61 chr12 80085545 80086122 -41171408 + Lx5 LINE L1 6472 7047 -3 2 1196 699 179 17 1 chr12 80086543 80086677 -41170853 - B1_Mur3 SINE Alu 0 149 15 2 1196 515 330 20 50 chr12 80087077 80087126 -41170404 - MER3 DNA MER1_type -16 193 152 2 1196 1119 82 7 0 chr12 80087126 80087273 -41170257 + B1_Mus1 SINE Alu 1 148 0 2 1196 515 330 20 50 chr12 80087273 80087421 -41170109 - MER3 DNA MER1_type -58 151 2 2 1196 282 293 99 26 chr12 80087723 80087874 -41169656 - MIR SINE MIR -43 219 58 2 1196 1706 26 0 0 chr12 80087923 80088116 -41169414 + B2_Mm1t SINE B2 1 193 0 2 1196 222 361 134 0 chr12 80089300 80089419 -41168111 - MIR SINE MIR 0 262 128 2 1196 550 219 9 0 chr12 80089627 80089732 -41167798 - RSINE1 SINE B4 -58 107 2 2 1196 186 353 89 25 chr12 80091774 80091931 -41165599 - L2 LINE L2 -835 2584 2418 2 1196 258 291 19 37 chr12 80092383 80092490 -41165040 + CT-rich Low_complexity Low_complexity 4 108 0 2 1196 480 48 0 0 chr12 80092599 80092662 -41164868 + (TAG)n Simple_repeat Simple_repeat 1 63 0 2 1196 682 157 0 0 chr12 80093020 80093122 -41164408 - B1_Mus2 SINE Alu -4 143 42 2 1196 238 211 69 59 chr12 80093065 80093166 -41164364 - RLTR25B LTR ERVK -530 498 397 2 1196 422 177 98 81 chr12 80093250 80093373 -41164157 - ID_B1 SINE B4 -77 147 23 2 1196 501 244 8 17 chr12 80093442 80093559 -41163971 - PB1D10 SINE Alu 0 117 2 2 1196 740 285 133 24 chr12 80093560 80093891 -41163639 + MER20B DNA MER1_type 292 658 -125 2 1196 440 267 36 36 chr12 80093919 80094059 -41163471 + B1F SINE Alu 10 149 0 2 1196 553 235 28 35 chr12 80094083 80094224 -41163306 + B1F SINE Alu 7 146 -3 2 1196 755 204 7 0 chr12 80094232 80094369 -41163161 + B1_Mus1 SINE Alu 3 140 -8 2 1196 294 29 0 0 chr12 80094443 80094478 -41163052 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1196 362 21 0 21 chr12 80094478 80094525 -41163005 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1196 355 233 178 17 chr12 80095638 80095756 -41161774 + B1F SINE Alu 4 140 -9 2 1196 331 311 57 0 chr12 80096067 80096173 -41161357 + PB1D10 SINE Alu 5 116 -1 2 1196 672 286 5 96 chr12 80096235 80096432 -41161098 - B3A SINE B2 -16 182 4 2 1196 230 356 8 34 chr12 80096651 80096770 -41160760 - MER46C DNA MER2_type -45 293 178 2 1196 429 272 64 0 chr12 80097162 80097287 -41160243 + B3 SINE B2 77 209 -7 2 1196 419 338 0 22 chr12 80097846 80097985 -41159545 + MIR SINE MIR 13 148 -114 2 1196 243 0 0 0 chr12 80097999 80098026 -41159504 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1196 960 298 97 3 chr12 80098070 80098380 -41159150 - MER2 DNA MER2_type 0 345 7 2 1196 273 128 0 0 chr12 80098438 80098485 -41159045 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1196 1147 265 45 0 chr12 80098516 80098780 -41158750 - B4A SINE B4 -16 276 1 2 1196 557 348 134 46 chr12 80098966 80099323 -41158207 + LTR78 LTR ERV1 295 702 -602 2 1196 472 252 78 43 chr12 80099323 80099464 -41158066 - B1F SINE Alu -1 148 3 2 1196 557 348 134 46 chr12 80099464 80099582 -41157948 + LTR78 LTR ERV1 703 812 -492 2 1196 494 312 38 0 chr12 80099644 80099801 -41157729 + LTR78 LTR ERV1 1084 1246 -58 2 1196 883 224 54 59 chr12 80099861 80100065 -41157465 + B3 SINE B2 1 203 -13 2 1196 26 0 0 0 chr12 80100065 80100091 -41157439 + AT_rich Low_complexity Low_complexity 1 26 0 2 1196 634 187 249 83 chr12 80100138 80100173 -41157357 + B3 SINE B2 6 40 -176 3 1196 1419 80 21 0 chr12 80100173 80100361 -41157169 + B2_Mm1a SINE B2 1 192 -1 3 1196 634 187 249 83 chr12 80100361 80100506 -41157024 + B3 SINE B2 41 216 0 3 1196 200 188 0 0 chr12 80100901 80100933 -41156597 + polypurine Low_complexity Low_complexity 1 32 0 3 1196 279 305 0 12 chr12 80101719 80101802 -41155728 - ID4_ SINE ID 0 83 2 3 1196 2349 75 50 9 chr12 80102105 80102362 -41155168 + L1_Mus3 LINE L1 6280 6538 -100 3 1196 450 0 0 0 chr12 80102362 80102412 -41155118 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1196 2349 75 50 9 chr12 80102412 80102492 -41155038 + L1_Mus3 LINE L1 6539 6631 -7 3 1196 542 305 126 21 chr12 80102652 80102843 -41154687 + MIRb SINE MIR 50 260 -8 3 1196 270 0 0 0 chr12 80103310 80103340 -41154190 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1196 2174 279 15 24 chr12 80103474 80104136 -41153394 + Lx9 LINE L1 6607 7262 -382 3 1196 180 191 82 41 chr12 80104491 80104540 -41152990 - MIR3 SINE MIR -54 154 104 3 1196 677 218 53 0 chr12 80104776 80104909 -41152621 - B1F2 SINE Alu -2 147 8 3 1196 21 0 0 0 chr12 80105289 80105310 -41152220 + AT_rich Low_complexity Low_complexity 1 21 0 3 1196 591 15 0 0 chr12 80105516 80105584 -41151946 + (TC)n Simple_repeat Simple_repeat 2 69 0 3 1196 279 0 0 0 chr12 80106860 80106891 -41150639 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1196 573 15 0 0 chr12 80106891 80106957 -41150573 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1196 31 0 0 0 chr12 80108209 80108240 -41149290 + GC_rich Low_complexity Low_complexity 1 31 0 3 1196 212 211 0 0 chr12 80108777 80108815 -41148715 - MIRc SINE MIR -112 156 119 3 1196 246 323 0 66 chr12 80109166 80109272 -41148258 - PB1D10 SINE Alu -17 100 2 3 1196 2280 62 55 7 chr12 80109310 80109619 -41147911 + Lx LINE L1 6324 6647 -7 3 1196 1116 73 0 0 chr12 80109831 80109968 -41147562 + B1_Mm SINE Alu 1 137 -10 3 1196 299 0 73 0 chr12 80109968 80110009 -41147521 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1196 2428 155 148 6 chr12 80110075 80110542 -41146988 - MT2A LTR ERVL 0 533 1 3 1196 902 55 0 0 chr12 80110607 80110717 -41146813 + B1_Mus1 SINE Alu 1 110 -38 3 1196 742 219 20 0 chr12 80110717 80110863 -41146667 - B3A SINE B2 -48 150 2 3 1196 227 254 32 0 chr12 80111225 80111288 -41146242 + ID4 SINE ID 1 65 -18 3 1196 223 278 142 44 chr12 80111404 80111517 -41146013 + MIR SINE MIR 124 247 -15 3 1196 720 151 41 48 chr12 80111809 80111955 -41145575 + ORSL DNA Tip100 9 153 -122 3 1196 422 302 33 20 chr12 80112121 80112303 -41145227 - MIRc SINE MIR -77 199 14 3 1196 28 48 0 0 chr12 80112672 80112714 -41144816 + AT_rich Low_complexity Low_complexity 1 42 0 3 1196 577 333 55 31 chr12 80112727 80112984 -41144546 + B4A SINE B4 30 292 0 3 1196 465 296 108 23 chr12 80113071 80113247 -41144283 + MIRb SINE MIR 49 239 -29 3 1196 1111 79 53 0 chr12 80113305 80113457 -41144073 + B2_Mm1a SINE B2 1 160 -33 3 1196 411 21 0 0 chr12 80113457 80113505 -41144025 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 3 1196 517 163 17 51 chr12 80113720 80113837 -41143693 + B1_Mus2 SINE Alu 1 117 -3 3 1196 439 266 34 0 chr12 80113893 80114009 -41143521 - B1F SINE Alu -1 126 1 3 1196 480 229 21 0 chr12 80114087 80114183 -41143347 - ID_B1 SINE B4 -6 218 121 3 1196 1161 61 0 20 chr12 80114197 80114347 -41143183 - B1_Mus1 SINE Alu 0 148 2 3 1196 465 211 0 50 chr12 80114408 80114508 -41143022 - PB1D9 SINE Alu -9 111 17 3 1196 25 0 0 0 chr12 80114568 80114593 -41142937 + AT_rich Low_complexity Low_complexity 1 25 0 3 1196 561 265 43 0 chr12 80114607 80114724 -41142806 + RSINE1 SINE B4 4 125 -40 3 1196 1123 64 21 0 chr12 80114826 80114967 -41142563 + B1_Mus1 SINE Alu 5 148 0 3 1196 189 0 0 0 chr12 80114967 80114988 -41142542 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1196 351 250 17 26 chr12 80114997 80115112 -41142418 - L1MC1 LINE L1 -426 5907 5794 3 1196 267 262 33 40 chr12 80115088 80115239 -41142291 - L1MC5 LINE L1 -82 7879 7730 3 1196 377 239 55 17 chr12 80115209 80115341 -41142189 - L1MC1 LINE L1 -2155 5840 5702 3 1196 309 250 0 0 chr12 80115506 80115566 -41141964 + RSINE1 SINE B4 77 136 -29 3 1196 292 85 0 21 chr12 80115581 80115629 -41141901 + B1_Mm SINE Alu 101 147 0 3 1196 26 64 0 0 chr12 80115629 80115676 -41141854 + AT_rich Low_complexity Low_complexity 1 47 0 3 1196 785 184 73 7 chr12 80115691 80115828 -41141702 + B1_Mur2 SINE Alu 3 148 -1 3 1196 599 254 27 5 chr12 80115832 80116018 -41141512 - L1MC1 LINE L1 -615 5718 5529 3 1196 357 219 0 40 chr12 80116212 80116288 -41141242 - B1_Mur4 SINE Alu -75 75 2 3 1196 1088 57 35 0 chr12 80116484 80116625 -41140905 + B1_Mus2 SINE Alu 2 147 0 3 1196 330 183 119 24 chr12 80116734 80116818 -41140712 + ID_B1 SINE B4 133 224 0 3 1196 252 68 65 43 chr12 80116998 80117044 -41140486 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 3 1196 321 82 0 0 chr12 80117051 80117100 -41140430 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1196 249 33 0 0 chr12 80117576 80117606 -41139924 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 3 1196 343 242 73 10 chr12 80118523 80118619 -41138911 + PB1D7 SINE Alu 12 113 -7 3 1196 294 103 45 22 chr12 80118722 80118811 -41138719 + (CAAA)n Simple_repeat Simple_repeat 2 92 0 3 1196 352 231 89 115 chr12 80119623 80119814 -41137716 - L1ME4a LINE L1 -8 6116 5931 3 1196 852 272 14 5 chr12 80119999 80120206 -41137324 - B3 SINE B2 -6 210 2 3 1196 1481 171 79 140 chr12 80120474 80120699 -41136831 + ORR1D1 LTR MaLR 1 192 -182 3 1196 1237 61 0 0 chr12 80120699 80120846 -41136684 - B1_Mus1 SINE Alu 0 148 2 3 1196 1481 171 79 140 chr12 80120846 80121014 -41136516 + ORR1D1 LTR MaLR 193 370 -4 3 1196 641 208 64 75 chr12 80121608 80121628 -41135902 - B2_Mm2 SINE B2 -10 185 165 3 1196 243 0 0 0 chr12 80121628 80121655 -41135875 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1196 450 0 0 0 chr12 80121655 80121704 -41135826 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1196 896 219 24 6 chr12 80121704 80121869 -41135661 - B3A SINE B2 -30 168 1 3 1196 1808 117 2 226 chr12 80121904 80121998 -41135532 + ORR1A2 LTR MaLR 1 94 -233 3 1196 1377 91 5 0 chr12 80121998 80122184 -41135346 + B2_Mm1a SINE B2 5 191 -2 3 1196 1808 117 2 226 chr12 80122184 80122270 -41135260 + ORR1A2 LTR MaLR 95 95 -232 3 1196 1675 32 0 0 chr12 80122270 80122459 -41135071 + B2_Mm1a SINE B2 1 189 -4 3 1196 1232 62 0 0 chr12 80122460 80122606 -41134924 + B1_Mus2 SINE Alu 2 147 0 3 1196 315 0 0 0 chr12 80122610 80122645 -41134885 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1196 1808 117 2 226 chr12 80122645 80122877 -41134653 + ORR1A2 LTR MaLR 95 325 -2 3 1196 188 259 112 45 chr12 80123074 80123163 -41134367 + MIR SINE MIR 33 127 -135 3 1196 419 93 333 27 chr12 80123230 80123341 -41134189 - B2_Mm2 SINE B2 -4 191 47 3 1196 432 0 0 0 chr12 80123397 80123445 -41134085 + (TTA)n Simple_repeat Simple_repeat 1 48 0 3 1196 961 74 59 7 chr12 80123445 80123576 -41133954 - B2_Mm1t SINE B2 -50 143 5 3 1196 830 228 140 0 chr12 80123675 80123868 -41133662 + ID_B1 SINE B4 2 221 -3 3 1196 471 35 0 0 chr12 80124513 80124570 -41132960 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1196 238 267 39 26 chr12 80125814 80125891 -41131639 - MER5A DNA MER1_type -72 117 40 3 1196 225 284 60 50 chr12 80125816 80125916 -41131614 + MER5B DNA MER1_type 74 174 -4 3 1196 297 0 0 0 chr12 80126412 80126445 -41131085 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 3 1196 248 42 42 0 chr12 80127126 80127174 -41130356 - B2_Mm1t SINE B2 -6 187 138 3 1196 370 124 0 5 chr12 80127163 80127228 -41130302 - B2_Mm2 SINE B2 -107 109 47 3 1196 1345 90 11 0 chr12 80127260 80127437 -41130093 - B2_Mm1t SINE B2 -14 179 1 3 1196 580 237 156 31 chr12 80127449 80127641 -41129889 - B3 SINE B2 0 216 1 3 1196 313 385 54 7 chr12 80127669 80127818 -41129712 - MIRb SINE MIR -107 161 6 3 1196 296 333 78 17 chr12 80127900 80128016 -41129514 + LTR82B Low_complexity ERVL 54 176 -654 3 1196 511 318 73 47 chr12 80127916 80128150 -41129380 + LTR82B Low_complexity ERVL 125 364 -466 3 1196 665 252 0 14 chr12 80128581 80128722 -41128808 + B1_Mur1 SINE Alu 1 139 -10 3 1196 1284 21 0 0 chr12 80128780 80128922 -41128608 + B1_Mus2 SINE Alu 1 142 -5 3 1196 36 0 0 0 chr12 80128922 80128958 -41128572 + AT_rich Low_complexity Low_complexity 1 36 0 3 1196 233 208 14 0 chr12 80128969 80129041 -41128489 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1196 216 170 106 0 chr12 80129322 80129369 -41128161 - MER5A DNA MER1_type -69 120 69 3 1196 234 0 0 0 chr12 80129458 80129484 -41128046 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 3 1196 774 105 0 0 chr12 80129485 80129599 -41127931 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 3 1196 220 179 26 0 chr12 80129606 80129645 -41127885 - ID4_ SINE ID -3 80 41 3 1196 24 0 0 0 chr12 80130094 80130118 -41127412 + GC_rich Low_complexity Low_complexity 1 24 0 3 1196 370 305 20 77 chr12 80131193 80131358 -41126172 - MIRc SINE MIR -52 156 3 3 1196 232 254 27 40 chr12 80131518 80131592 -41125938 + T-rich Low_complexity Low_complexity 1 73 0 3 1196 487 258 73 0 chr12 80131889 80132013 -41125517 + B1F SINE Alu 1 133 -16 3 1196 522 249 40 31 chr12 80132101 80132300 -41125230 + L1MC LINE L1 5601 5799 -379 3 1196 555 213 151 66 chr12 80132383 80132549 -41124981 + B3A SINE B2 3 182 -16 3 1196 398 177 35 41 chr12 80132556 80132727 -41124803 + (CATATA)n Simple_repeat Simple_repeat 3 172 0 4 1196 676 214 12 0 chr12 80132702 80132870 -41124660 + (TA)n Simple_repeat Simple_repeat 1 170 0 4 1196 583 63 24 37 chr12 80132872 80132954 -41124576 + B1_Mur4 SINE Alu 57 137 -13 4 1196 1242 54 0 0 chr12 80133131 80133278 -41124252 + B1_Mus1 SINE Alu 2 148 0 4 1196 237 358 73 0 chr12 80133635 80133744 -41123786 - PB1 SINE Alu -10 117 1 4 1196 482 186 17 17 chr12 80134253 80134429 -41123101 + CT-rich Low_complexity Low_complexity 1 176 0 4 1196 360 221 0 14 chr12 80134451 80134520 -41123010 - B1F1 SINE Alu -80 69 2 4 1196 817 234 84 134 chr12 80135408 80135670 -41121860 + B4A SINE B4 21 269 -23 4 1196 357 24 0 0 chr12 80135671 80135713 -41121817 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1196 484 292 62 39 chr12 80137163 80137207 -41120323 + ID_B1 SINE B4 43 224 0 4 1196 703 168 45 22 chr12 80137207 80137341 -41120189 + B1_Mur2 SINE Alu 12 148 -1 4 1196 257 230 0 39 chr12 80137533 80137610 -41119920 - L1MC5 LINE L1 -44 7917 7844 4 1196 919 152 7 0 chr12 80137753 80137898 -41119632 - B1_Mur4 SINE Alu 0 150 5 4 1196 222 37 0 0 chr12 80137909 80137936 -41119594 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1196 911 175 132 20 chr12 80137947 80138151 -41119379 - Lx9 LINE L1 -178 7466 7240 4 1196 925 188 31 106 chr12 80138170 80138396 -41119134 - B3 SINE B2 -6 210 2 4 1196 180 0 0 0 chr12 80138547 80138567 -41118963 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 4 1196 687 132 79 0 chr12 80138576 80138690 -41118840 - B1_Mus2 SINE Alu -17 130 8 4 1196 415 230 58 87 chr12 80138690 80138705 -41118825 - ID_B1 SINE B4 -12 169 79 4 1196 369 239 35 43 chr12 80139424 80139611 -41117919 + L1_Mm LINE L1 5388 5608 -704 4 1196 276 239 43 64 chr12 80139610 80139704 -41117826 + Lx8 LINE L1 7154 7245 -228 4 1196 584 286 50 14 chr12 80139779 80139999 -41117531 + L1_Rod LINE L1 5532 5759 -88 4 1196 1230 48 7 0 chr12 80140004 80140151 -41117379 + B1_Mus1 SINE Alu 1 148 0 4 1196 393 22 0 0 chr12 80140425 80140471 -41117059 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1196 448 291 44 16 chr12 80140809 80140991 -41116539 + RMER15 LTR ERVL 389 575 0 4 1196 510 114 0 0 chr12 80141705 80141793 -41115737 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1196 306 180 0 0 chr12 80141793 80141854 -41115676 + CT-rich Low_complexity Low_complexity 2 62 0 4 1196 510 246 60 0 chr12 80141966 80142100 -41115430 + B1_Mur1 SINE Alu 6 147 -2 4 1196 244 357 98 23 chr12 80142632 80142764 -41114766 - MamRep434 DNA TcMar -273 153 12 4 1196 563 332 107 0 chr12 80144482 80144678 -41112852 - MLT1J LTR MaLR -289 223 7 4 1196 410 237 0 0 chr12 80144703 80144779 -41112751 - ID4 SINE ID -3 80 5 4 1196 190 187 26 13 chr12 80144805 80144881 -41112649 + A-rich Low_complexity Low_complexity 5 81 0 4 1196 302 211 56 135 chr12 80144981 80145107 -41112423 + PB1D10 SINE Alu 2 117 0 4 1196 205 51 25 25 chr12 80145107 80145147 -41112383 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1196 290 297 13 13 chr12 80145435 80145510 -41112020 - ID SINE ID -146 78 4 4 1196 284 312 23 31 chr12 80145510 80145639 -41111891 + YREP_Mm Unknown Unknown 167 294 -1518 4 1196 702 231 46 32 chr12 80145526 80145713 -41111817 - ID_B1 SINE B4 -68 224 50 4 1196 423 142 19 68 chr12 80146279 80146392 -41111138 + PB1D10 SINE Alu 6 120 0 4 1196 1117 148 109 16 chr12 80146414 80146606 -41110924 - B3 SINE B2 -6 210 1 4 1196 885 243 13 19 chr12 80146631 80146841 -41110689 + B3A SINE B2 2 209 -7 4 1196 562 142 82 74 chr12 80147068 80147190 -41110340 - B1_Mm SINE Alu -24 123 1 4 1196 348 171 19 185 chr12 80147103 80147211 -41110319 - MT2B LTR ERVL -361 240 151 4 1196 258 210 0 36 chr12 80148543 80148614 -41108916 + PB1D9 SINE Alu 21 89 -31 4 1196 233 178 0 62 chr12 80148604 80148652 -41108878 - ID4 SINE ID -36 47 3 4 1196 629 266 19 25 chr12 80148776 80148938 -41108592 - RSINE1 SINE B4 -2 163 3 4 1196 183 80 0 0 chr12 80148975 80149000 -41108530 + (CTTA)n Simple_repeat Simple_repeat 1 25 0 4 1196 21 36 0 0 chr12 80149142 80149170 -41108360 + AT_rich Low_complexity Low_complexity 1 28 0 4 1196 282 115 0 0 chr12 80149170 80149222 -41108308 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1196 244 143 0 0 chr12 80149339 80149374 -41108156 - PB1D7 SINE Alu -82 38 4 4 1196 795 197 0 15 chr12 80149568 80149702 -41107828 - B1_Mur2 SINE Alu -16 133 2 4 1196 277 262 0 0 chr12 80150766 80150827 -41106703 + B1_Mur1 SINE Alu 89 149 0 4 1196 277 313 78 29 chr12 80150827 80150929 -41106601 - MLT1J LTR MaLR -299 213 107 4 1196 402 256 0 0 chr12 80152053 80152135 -41105395 - PB1D10 SINE Alu -30 87 6 4 1196 443 304 9 0 chr12 80152586 80152698 -41104832 - MER58A DNA MER1_type -74 150 38 4 1196 201 227 23 0 chr12 80152750 80152794 -41104736 + L3 LINE CR1 4435 4479 -10 4 1196 193 314 45 45 chr12 80152992 80153102 -41104428 - MIRb SINE MIR -45 223 114 4 1196 300 182 167 13 chr12 80153243 80153321 -41104209 - B1_Mus2 SINE Alu -37 110 21 4 1196 437 22 20 0 chr12 80153774 80153838 -41103692 - B1_Mus2 SINE Alu 0 147 52 4 1196 307 311 39 39 chr12 80154072 80154199 -41103331 - PB1 SINE Alu 0 127 1 4 1196 336 290 69 10 chr12 80154351 80154452 -41103078 - PB1D10 SINE Alu -6 111 5 4 1196 1287 120 16 0 chr12 80155006 80155197 -41102333 + B2_Mm2 SINE B2 2 195 0 4 1196 233 196 43 0 chr12 80155386 80155432 -41102098 - ID2 SINE ID -12 71 24 4 1196 271 204 120 10 chr12 80156633 80156756 -41100774 + MIR SINE MIR 46 173 -89 4 1196 26 30 0 0 chr12 80156777 80156810 -41100720 + AT_rich Low_complexity Low_complexity 1 33 0 4 1196 671 230 37 0 chr12 80156873 80157008 -41100522 - RSINE1 SINE B4 -23 142 3 4 1196 534 268 8 0 chr12 80157087 80157210 -41100320 + B3 SINE B2 85 208 -8 4 1196 3232 26 0 80 chr12 80157436 80157860 -41099670 - RLTR10 LTR ERVK 0 390 1 4 1196 8548 21 0 0 chr12 80157862 80158857 -41098673 - RLTR10-int LTR ERVK -3 1984 990 4 1196 352 271 31 8 chr12 80158939 80159069 -41098461 - RLTR10-int LTR ERVK -5987 1594 1462 4 1196 4211 35 4 2 chr12 80159133 80160016 -41097514 - RLTR10-int LTR ERVK -989 998 41 4 1196 3232 26 0 80 chr12 80160026 80160450 -41097080 - RLTR10 LTR ERVK 0 390 1 4 1196 181 316 79 0 chr12 80160651 80160727 -41096803 - MIR3 SINE MIR -50 158 77 4 1196 341 309 153 24 chr12 80162694 80162903 -41094627 - MIRb SINE MIR -16 252 17 4 1196 192 292 81 100 chr12 80163019 80163179 -41094351 + MIRm SINE MIR 5 161 -115 4 1196 320 241 13 0 chr12 80163904 80163983 -41093547 - ID2 SINE ID -2 81 2 4 1196 214 182 23 0 chr12 80164050 80164094 -41093436 - B4 SINE B4 -245 47 3 4 1196 423 0 0 0 chr12 80164249 80164296 -41093234 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 4 1196 259 221 54 0 chr12 80164615 80164704 -41092826 - B1_Mus2 SINE Alu -14 106 8 4 1196 1419 130 28 0 chr12 80166019 80166235 -41091295 + URR1A DNA MER1_type 5 226 0 4 1196 274 351 93 0 chr12 80167112 80167263 -41090267 + MER117 DNA MER1_type 2 166 -31 4 1196 239 305 0 0 chr12 80167287 80167346 -41090184 - PB1 SINE Alu -68 59 1 4 1196 209 295 0 32 chr12 80167849 80167912 -41089618 + GA-rich Low_complexity Low_complexity 4 64 0 4 1196 277 225 113 82 chr12 80169800 80169897 -41087633 - PB1D10 SINE Alu -13 104 5 4 1196 180 135 0 0 chr12 80171385 80171422 -41086108 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 4 1196 357 277 59 0 chr12 80171447 80171548 -41085982 + PB1D10 SINE Alu 7 113 -4 4 1196 423 56 0 0 chr12 80172750 80172804 -41084726 + (GGGA)n Simple_repeat Simple_repeat 2 55 0 4 1196 183 129 0 0 chr12 80172804 80172835 -41084695 + (CAGG)n Simple_repeat Simple_repeat 1 31 0 4 1196 261 83 0 0 chr12 80172835 80172870 -41084660 + (TCCG)n Simple_repeat Simple_repeat 2 37 0 4 1196 2822 97 31 15 chr12 80172870 80173391 -41084139 - RMER6A LTR ERVK -179 577 4 4 1196 573 221 82 0 chr12 80173456 80173578 -41083952 + RSINE1 SINE B4 5 136 -29 4 1196 517 218 136 0 chr12 80176945 80177055 -41080475 + B1F1 SINE Alu 1 125 -24 4 1196 186 262 66 0 chr12 80177134 80177195 -41080335 - MIR SINE MIR -110 152 88 4 1196 1183 201 24 0 chr12 80178479 80178688 -41078842 + B3 SINE B2 3 216 0 4 1196 246 292 80 40 chr12 80178871 80178946 -41078584 - ID4_ SINE ID -3 80 3 4 1196 21 0 0 0 chr12 80181618 80181639 -41075891 + AT_rich Low_complexity Low_complexity 1 21 0 4 1196 895 142 14 0 chr12 80182238 80182379 -41075151 - B1_Mur2 SINE Alu -5 144 2 4 1196 436 245 19 9 chr12 80182670 80182777 -41074753 - PB1D10 SINE Alu -9 108 1 4 1196 590 170 20 10 chr12 80183041 80183142 -41074388 - PB1D9 SINE Alu -17 103 2 4 1196 191 36 0 35 chr12 80183686 80183715 -41073815 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1196 850 89 16 24 chr12 80183715 80183835 -41073695 - B1_Mur4 SINE Alu -13 137 18 4 1196 22 0 0 0 chr12 80184252 80184274 -41073256 + AT_rich Low_complexity Low_complexity 1 22 0 4 1196 33 56 0 0 chr12 80184292 80184346 -41073184 + AT_rich Low_complexity Low_complexity 1 54 0 4 1196 886 122 43 0 chr12 80184877 80185016 -41072514 + B1_Mur4 SINE Alu 6 150 0 4 1196 32 0 0 0 chr12 80185031 80185063 -41072467 + AT_rich Low_complexity Low_complexity 1 32 0 5 1196 809 158 15 0 chr12 80185065 80185198 -41072332 - B1_Mur1 SINE Alu 0 149 15 5 1196 908 168 14 14 chr12 80185783 80185928 -41071602 + B1_Mur1 SINE Alu 4 148 -1 5 1196 589 237 72 29 chr12 80185955 80186094 -41071436 + B3A SINE B2 4 148 -50 5 1196 396 0 0 0 chr12 80186096 80186140 -41071390 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1196 264 266 0 0 chr12 80186171 80186235 -41071295 + PB1D10 SINE Alu 48 111 -6 5 1196 1126 68 37 0 chr12 80186998 80187160 -41070370 + B2_Mm2 SINE B2 27 194 -1 5 1196 395 277 19 57 chr12 80187232 80187289 -41070241 + MER58C DNA MER1_type 65 119 -96 5 1196 407 180 173 39 chr12 80187289 80187416 -41070114 + B1F2 SINE Alu 4 147 -2 5 1196 395 277 19 57 chr12 80187416 80187432 -41070098 + MER58C DNA MER1_type 120 134 -81 5 1196 1107 209 19 0 chr12 80187432 80187642 -41069888 + B3 SINE B2 3 216 0 5 1196 395 277 19 57 chr12 80187642 80187724 -41069806 + MER58C DNA MER1_type 135 215 0 5 1196 290 272 37 0 chr12 80187954 80188035 -41069495 + GA-rich Low_complexity Low_complexity 6 89 0 5 1196 297 245 28 38 chr12 80188522 80188628 -41068902 + PB1D10 SINE Alu 1 105 -12 5 1196 258 290 81 0 chr12 80188682 80188744 -41068786 + MIRb SINE MIR 16 82 -186 5 1196 685 217 16 0 chr12 80188860 80188989 -41068541 + B1_Mur2 SINE Alu 1 131 -18 5 1196 721 163 13 84 chr12 80189140 80189294 -41068236 - B1_Mur2 SINE Alu -1 148 6 5 1196 371 207 21 75 chr12 80189216 80189310 -41068220 - MT2B LTR ERVL -361 240 152 5 1196 437 286 0 0 chr12 80189321 80189419 -41068111 - RSINE1 SINE B4 -35 130 33 5 1196 319 273 31 18 chr12 80189578 80189695 -41067835 + B1_Mus2 SINE Alu 1 120 0 5 1196 216 0 0 0 chr12 80190893 80190917 -41066613 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 5 1196 2510 139 89 61 chr12 80191308 80191813 -41065717 - RLTR24 LTR ERV1 -10 519 1 5 1196 582 275 7 26 chr12 80192145 80192298 -41065232 + RSINE1 SINE B4 16 165 0 5 1196 290 214 126 35 chr12 80192365 80192452 -41065078 - PB1D7 SINE Alu -8 112 18 5 1196 269 232 19 39 chr12 80192813 80192826 -41064704 - L1MDa LINE L1 -5443 1190 1179 5 1196 1991 165 46 25 chr12 80192826 80193192 -41064338 - ORR1D1 LTR MaLR 0 374 1 5 1196 269 232 19 39 chr12 80193192 80193281 -41064249 - L1MDa LINE L1 -5455 1178 1090 5 1196 931 323 74 48 chr12 80193394 80194037 -41063493 - L1MDa LINE L1 -5503 1130 145 5 1196 1012 144 26 26 chr12 80194586 80194779 -41062751 - B2_Mm2 SINE B2 0 195 3 5 1196 405 0 0 0 chr12 80194779 80194824 -41062706 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 5 1196 1834 124 73 134 chr12 80194843 80194908 -41062622 - ORR1B1 LTR MaLR -10 384 338 5 1196 1298 7 0 7 chr12 80194908 80195055 -41062475 - B1_Mm SINE Alu 0 147 2 5 1196 9235 155 38 101 chr12 80195055 80196220 -41061310 - ORR1B1-int LTR MaLR -2 1790 1 5 1196 1128 191 102 122 chr12 80196220 80196620 -41060910 + RLTR9C LTR ERVK 1 392 -1 5 1196 1203 106 11 16 chr12 80196620 80196802 -41060728 - B2_Mm2 SINE B2 -14 181 1 5 1196 9235 147 34 84 chr12 80196802 80198051 -41059479 - ORR1B1-int LTR MaLR -795 1168 17 5 1196 655 175 0 9 chr12 80198046 80198161 -41059369 + B1_Mur2 SINE Alu 35 148 -1 5 1196 668 294 122 12 chr12 80198183 80198438 -41059092 + B4A SINE B4 8 290 -2 5 1196 269 278 69 0 chr12 80198745 80198817 -41058713 - ID4_ SINE ID -3 80 4 5 1196 569 186 26 9 chr12 80198883 80198997 -41058533 + PB1D10 SINE Alu 2 117 0 5 1196 508 165 87 0 chr12 80199606 80199709 -41057821 - B1_Mur1 SINE Alu -6 143 32 5 1196 490 216 176 0 chr12 80199733 80199858 -41057672 - B1_Mur1 SINE Alu -1 148 2 5 1196 184 217 217 0 chr12 80199894 80199940 -41057590 - MER5B DNA MER1_type -21 157 102 5 1196 1777 158 85 101 chr12 80200148 80200298 -41057232 - RLTR14 LTR ERV1 0 382 260 5 1196 1631 21 16 0 chr12 80200298 80200487 -41057043 - B2_Mm1a SINE B2 0 193 2 5 1196 1777 158 85 101 chr12 80200487 80200724 -41056806 - RLTR14 LTR ERV1 -123 259 1 5 1196 686 243 83 22 chr12 80200917 80201098 -41056432 - B3 SINE B2 -4 212 21 5 1196 505 230 200 7 chr12 80201194 80201334 -41056196 - B3A SINE B2 0 198 32 5 1196 221 213 145 16 chr12 80201286 80201348 -41056182 - B4 SINE B4 -213 79 10 5 1196 878 185 0 0 chr12 80201504 80201639 -41055891 + B1_Mur4 SINE Alu 6 140 -10 5 1196 3177 141 32 26 chr12 80201763 80202301 -41055229 + RLTR20A LTR ERVK 1 541 0 5 1196 636 106 0 0 chr12 80202759 80202853 -41054677 + (TC)n Simple_repeat Simple_repeat 2 95 0 5 1196 1076 90 7 14 chr12 80202859 80203006 -41054524 - B1_Mus2 SINE Alu 0 147 2 5 1196 438 153 129 0 chr12 80203006 80203091 -41054439 - B1_Mur3 SINE Alu -45 104 9 5 1196 898 266 87 42 chr12 80203368 80203819 -41053711 + Lx7 LINE L1 855 1325 -6403 5 1196 1183 271 140 23 chr12 80203807 80204286 -41053244 + Lx7 LINE L1 6796 7330 -366 5 1196 799 219 68 37 chr12 80204417 80204607 -41052923 + B3A SINE B2 3 198 0 5 1196 265 297 19 3 chr12 80204843 80204934 -41052596 + ID_B1 SINE B4 7 100 -65 5 1196 518 327 40 36 chr12 80205134 80205410 -41052120 - MER34-int LTR ERV1 -7210 997 721 5 1196 198 0 0 0 chr12 80205577 80205599 -41051931 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1196 623 246 130 12 chr12 80205641 80205790 -41051740 + B3A SINE B2 5 174 -24 5 1196 360 0 0 0 chr12 80205790 80205830 -41051700 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1196 618 14 0 0 chr12 80205830 80205900 -41051630 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1196 623 246 130 12 chr12 80205900 80205918 -41051612 + B3A SINE B2 175 192 -6 5 1196 806 224 40 0 chr12 80205935 80206109 -41051421 + B3A SINE B2 3 183 -15 5 1196 1237 236 126 66 chr12 80206321 80206594 -41050936 - MTD LTR MaLR -14 405 111 5 1196 2243 115 18 6 chr12 80206594 80206606 -41050924 + ORR1A1 LTR MaLR 1 12 -334 5 1196 234 0 0 0 chr12 80206606 80206632 -41050898 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 1196 2243 115 18 6 chr12 80206632 80206961 -41050569 + ORR1A1 LTR MaLR 13 344 -2 5 1196 1237 236 126 66 chr12 80206961 80207068 -41050462 - MTD LTR MaLR -309 110 2 5 1196 953 158 213 0 chr12 80207367 80207531 -41049999 + B3 SINE B2 2 200 -16 5 1196 624 27 0 0 chr12 80207532 80207606 -41049924 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1196 1405 93 5 5 chr12 80207740 80207935 -41049595 - B2_Mm2 SINE B2 0 195 1 5 1196 477 271 105 21 chr12 80207984 80208127 -41049403 + RSINE1 SINE B4 3 157 -8 5 1196 210 118 0 0 chr12 80208132 80208166 -41049364 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1196 261 83 0 0 chr12 80208181 80208217 -41049313 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5 1196 518 250 46 73 chr12 80208236 80208387 -41049143 - B1_Mus1 SINE Alu -1 147 1 5 1196 853 249 20 34 chr12 80208391 80208436 -41049094 - B3 SINE B2 -3 213 174 5 1196 2341 50 60 0 chr12 80208436 80208738 -41048792 - RLTR46 LTR ERVK 0 320 1 5 1196 853 249 20 34 chr12 80208738 80208896 -41048634 - B3 SINE B2 -43 173 13 5 1196 446 257 20 0 chr12 80208945 80209046 -41048484 - U6 snRNA snRNA -1 106 4 5 1196 410 191 30 69 chr12 80209123 80209155 -41048375 - PB1D10 SINE Alu -7 110 81 5 1196 2292 117 78 17 chr12 80209155 80209513 -41048017 + RLTR14 LTR ERV1 1 380 -2 5 1196 410 191 30 69 chr12 80209513 80209581 -41047949 - PB1D10 SINE Alu -37 80 14 5 1196 320 254 17 0 chr12 80209694 80209753 -41047777 - ID4 SINE ID -4 79 20 5 1196 609 137 0 0 chr12 80209802 80209919 -41047611 + (CA)n Simple_repeat Simple_repeat 1 117 0 5 1196 267 336 40 73 chr12 80210229 80210380 -41047150 - MER21B LTR ERV1 -408 455 310 5 1196 973 248 69 92 chr12 80210385 80210821 -41046709 - RLTR23 LTR ERV1 0 430 5 5 1196 860 65 8 0 chr12 80210840 80210964 -41046566 + (TCTA)n Simple_repeat Simple_repeat 3 127 0 5 1196 1241 42 0 0 chr12 80210967 80211110 -41046420 - B1_Mus1 SINE Alu -5 143 1 5 1196 2355 148 36 26 chr12 80211127 80211544 -41045986 + MTC LTR MaLR 1 421 0 5 1196 378 324 0 9 chr12 80211544 80211656 -41045874 - PB1D7 SINE Alu -8 112 2 5 1196 424 258 0 21 chr12 80212057 80212152 -41045378 + RSINE1 SINE B4 12 104 -61 5 1196 1152 243 177 50 chr12 80212147 80212627 -41044903 + RMER2 LTR ERV1 27 567 0 5 1196 244 302 0 0 chr12 80212630 80212683 -41044847 + RSINE1 SINE B4 72 124 -41 5 1196 27 81 0 0 chr12 80212874 80212936 -41044594 + AT_rich Low_complexity Low_complexity 1 62 0 5 1196 274 218 22 33 chr12 80212943 80213033 -41044497 - L1_Mus2 LINE L1 -12 6554 6466 5 1196 302 214 9 84 chr12 80213033 80213140 -41044390 - RLTR25B LTR ERVK -489 539 441 5 1196 866 29 0 0 chr12 80213072 80213177 -41044353 - B1_Mus1 SINE Alu -40 108 4 5 1196 1279 138 29 5 chr12 80213201 80213405 -41044125 - B3 SINE B2 -7 209 1 5 1196 439 150 71 103 chr12 80214069 80214195 -41043335 + RMER4A LTR ERVK 345 466 0 5 1196 215 283 0 0 chr12 80214877 80214930 -41042600 + (CTG)n Simple_repeat Simple_repeat 3 55 0 5 1196 24 0 0 0 chr12 80215236 80215260 -41042270 + AT_rich Low_complexity Low_complexity 1 24 0 5 1196 2384 109 65 45 chr12 80215292 80215695 -41041835 + IAPLTR2a LTR ERVK 1 411 0 5 1196 559 157 0 142 chr12 80215696 80215830 -41041700 + IAPEz-int LTR ERVK 9 123 -6358 5 1196 234 267 0 0 chr12 80215830 80215875 -41041655 + RLTR27 LTR ERVK 231 275 -34 5 1196 246 327 0 0 chr12 80215901 80215956 -41041574 + RLTR27 LTR ERVK 221 275 -34 5 149 3638 60 1 16 chr12 80215956 80216534 -41040996 + IAPEz-int LTR ERVK 168 662 -5819 5 1197 2350 50 0 0 chr12 80216534 80216812 -41040718 + IAPEz-int LTR ERVK 1359 1636 -4845 5 1197 6346 34 4 12 chr12 80216811 80217561 -41039969 + IAPEz-int LTR ERVK 5736 6479 -2 5 1197 510 46 0 0 chr12 80217562 80217627 -41039903 + IAPLTR2b LTR ERVK 263 327 0 5 1197 996 191 0 11 chr12 80217780 80217965 -41039565 - B3 SINE B2 -30 186 4 5 1197 597 289 4 124 chr12 80218762 80218836 -41038694 - ID_B1 SINE B4 -19 205 142 5 1197 749 193 107 20 chr12 80218836 80219032 -41038498 - B3 SINE B2 0 216 4 5 1197 597 289 4 124 chr12 80219032 80219190 -41038340 - ID_B1 SINE B4 -83 141 1 5 1197 592 230 201 0 chr12 80219218 80219392 -41038138 - B3 SINE B2 -4 212 4 5 1197 971 138 14 0 chr12 80219414 80219559 -41037971 - B1_Mus2 SINE Alu 0 147 1 5 1197 1589 159 57 11 chr12 80219572 80219679 -41037851 - RMER1B Other Other -5 1061 957 5 1197 342 0 0 0 chr12 80219679 80219717 -41037813 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1197 1589 159 57 11 chr12 80219717 80219889 -41037641 - RMER1B Other Other -110 956 769 5 1197 501 234 167 6 chr12 80219901 80220069 -41037461 - B3A SINE B2 -3 195 1 6 1197 528 213 28 0 chr12 80220224 80220332 -41037198 + PB1D10 SINE Alu 7 117 0 6 1197 386 299 35 0 chr12 80220417 80220504 -41037026 - B3 SINE B2 -124 92 3 6 1197 183 100 0 0 chr12 80220572 80220602 -41036928 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1197 673 200 67 0 chr12 80220604 80220739 -41036791 + B1_Mur1 SINE Alu 1 144 -5 6 1197 407 323 60 75 chr12 80220773 80220974 -41036556 + ID_B1 SINE B4 27 224 0 6 1197 476 217 85 25 chr12 80220858 80220976 -41036554 + B1F SINE Alu 25 149 0 6 1197 249 264 109 78 chr12 80220976 80221088 -41036442 - YREP_Mm Unknown Unknown -1520 292 56 6 1197 298 205 24 60 chr12 80221097 80221180 -41036350 + LTR48 LTR ERV1 4 83 -704 6 1197 1331 155 80 0 chr12 80221277 80221528 -41036002 + RCHARR1 DNA MER1_type 438 708 -266 6 1197 2084 149 119 3 chr12 80221575 80221945 -41035585 - MTC LTR MaLR -8 413 1 6 1197 769 268 82 127 chr12 80221976 80222074 -41035456 - MTD LTR MaLR -141 278 205 6 1197 841 255 14 9 chr12 80222074 80222288 -41035242 - B3 SINE B2 -1 215 1 6 1197 769 268 82 127 chr12 80222288 80222480 -41035050 - MTD LTR MaLR -215 204 1 6 1197 408 165 11 0 chr12 80222493 80222584 -41034946 + RCHARR1 DNA MER1_type 707 798 -176 6 1197 1516 177 68 60 chr12 80222592 80222999 -41034531 - RMER16 LTR ERVK 0 533 1 6 1197 367 163 61 0 chr12 80223000 80223098 -41034432 + RCHARR1 DNA MER1_type 794 897 -77 6 1197 844 198 126 10 chr12 80223291 80223328 -41034202 + MTD LTR MaLR 184 226 -193 6 1197 3413 40 2 0 chr12 80223328 80223723 -41033807 + MTA_Mm LTR MaLR 1 396 0 6 1197 844 198 126 10 chr12 80223723 80223884 -41033646 + MTD LTR MaLR 227 405 -14 6 1197 4443 18 2 0 chr12 80224176 80224668 -41032862 - MT2_Mm LTR ERVL 0 493 1 6 1197 321 0 0 0 chr12 80224668 80224706 -41032824 - MERVL-int LTR ERVL 0 5485 5448 6 1197 362 167 46 35 chr12 80224706 80224793 -41032737 - ORR1A3-int LTR MaLR -1323 640 553 6 1197 41436 14 14 0 chr12 80224802 80230070 -41027460 - MERVL-int LTR ERVL -145 5340 1 6 1197 4470 16 2 0 chr12 80230070 80230562 -41026968 - MT2_Mm LTR ERVL 0 493 1 6 1197 253 274 140 9 chr12 80230717 80230824 -41026706 - B3 SINE B2 -84 132 12 6 1197 988 245 5 14 chr12 80230975 80231190 -41026340 + B3 SINE B2 1 213 -3 6 1197 29 28 0 0 chr12 80231199 80231235 -41026295 + AT_rich Low_complexity Low_complexity 1 36 0 6 1197 501 231 0 3 chr12 80234184 80234304 -41023226 - B1_Mur2 SINE Alu 0 120 3 6 1197 726 215 80 0 chr12 80234461 80234624 -41022906 + B3 SINE B2 1 176 -40 6 1197 400 111 172 5 chr12 80234848 80234952 -41022578 - B2_Mm2 SINE B2 -8 187 46 6 1197 1261 87 35 0 chr12 80234964 80235137 -41022393 - B2_Mm1t SINE B2 -14 179 1 6 1197 216 0 0 0 chr12 80235525 80235549 -41021981 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1197 195 162 0 0 chr12 80235585 80235622 -41021908 + (CATA)n Simple_repeat Simple_repeat 4 40 0 6 1197 366 244 133 30 chr12 80236630 80236765 -41020765 - B1F2 SINE Alu 0 149 1 6 1197 207 114 0 0 chr12 80236950 80236985 -41020545 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1197 405 281 31 1 chr12 80237373 80237487 -41020043 - B1F1 SINE Alu -1 116 1 6 1197 528 16 0 0 chr12 80237496 80237557 -41019973 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1197 550 181 9 9 chr12 80237561 80237667 -41019863 - PB1D9 SINE Alu -13 107 2 6 1197 380 276 156 8 chr12 80237714 80237842 -41019688 + B1_Mur2 SINE Alu 1 147 -2 6 1197 265 228 124 34 chr12 80238017 80238216 -41019314 - L2b LINE L2 -167 3259 3025 6 1197 268 267 38 38 chr12 80238291 80238396 -41019134 + L1M4 LINE L1 304 408 -6134 6 1197 257 255 25 55 chr12 80238395 80238518 -41019012 + L1M4 LINE L1 5369 5484 -1160 6 1197 853 219 38 24 chr12 80238527 80238738 -41018792 + B3 SINE B2 3 216 0 6 1197 1045 95 0 0 chr12 80238798 80238946 -41018584 + B1_Mus1 SINE Alu 1 148 0 6 1197 390 273 42 78 chr12 80238809 80238976 -41018554 + B4A SINE B4 96 256 -36 6 1197 425 219 85 85 chr12 80239033 80239233 -41018297 - MLT1A1 LTR MaLR -208 200 1 6 1197 622 137 215 20 chr12 80239421 80239570 -41017960 - Lx3A LINE L1 -3 6978 6801 6 1197 2225 80 34 6 chr12 80239567 80239894 -41017636 - Lx3_Mus LINE L1 -750 6259 5924 6 1197 835 164 153 37 chr12 80239916 80240106 -41017424 - B3 SINE B2 -4 212 1 6 1197 235 243 41 90 chr12 80240876 80240927 -41016603 - RCHARR1 DNA MER1_type -8 966 917 6 1197 669 126 160 0 chr12 80240927 80241046 -41016484 - B1_Mus2 SINE Alu -9 138 1 6 1197 431 182 199 38 chr12 80241046 80241211 -41016319 - RCHARR1 DNA MER1_type -58 916 726 6 1197 300 343 57 7 chr12 80241211 80241352 -41016178 + B1F SINE Alu 1 148 -1 6 1197 771 209 63 100 chr12 80241339 80241559 -41015971 - RCHARR1 DNA MER1_type -227 747 524 6 1197 698 295 29 0 chr12 80241559 80241769 -41015761 - B3 SINE B2 0 216 1 6 1197 771 209 63 100 chr12 80241769 80241819 -41015711 - RCHARR1 DNA MER1_type -451 523 487 6 1197 247 175 70 0 chr12 80242182 80242239 -41015291 - MMAR1 DNA Mariner -20 1266 1206 6 1197 1350 249 73 11 chr12 80242306 80242687 -41014843 - MMAR1 DNA Mariner -42 1244 840 6 1197 788 191 173 6 chr12 80243424 80243603 -41013927 - B3 SINE B2 -6 210 2 6 1197 212 278 26 53 chr12 80243676 80243752 -41013778 - ID4 SINE ID -9 74 1 6 1197 1416 196 182 147 chr12 80244057 80244096 -41013434 - MT2A LTR ERVL -3 530 492 6 1197 258 116 0 0 chr12 80244096 80244139 -41013391 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1197 1416 196 182 147 chr12 80244139 80244609 -41012921 - MT2A LTR ERVL -42 491 4 6 1197 4947 72 18 5 chr12 80244676 80245329 -41012201 + L1Md_F2 LINE L1 5909 6570 -12 6 1197 437 225 99 8 chr12 80245429 80245550 -41011980 + B3 SINE B2 5 136 -80 6 1197 411 265 105 13 chr12 80245549 80245702 -41011828 - B3 SINE B2 -47 169 3 6 1197 497 313 6 58 chr12 80245769 80245925 -41011605 - RSINE1 SINE B4 -2 163 16 6 1197 557 236 88 29 chr12 80245963 80246133 -41011397 - B3 SINE B2 -36 180 1 6 1197 418 259 18 9 chr12 80246191 80246304 -41011226 + MTD LTR MaLR 4 117 -302 6 1197 594 183 76 38 chr12 80246301 80246432 -41011098 - B1_Mur1 SINE Alu 0 149 14 6 1197 1314 189 26 86 chr12 80246436 80246749 -41010781 + MTD LTR MaLR 105 398 -21 6 1197 654 165 43 0 chr12 80247184 80247299 -41010231 + B1_Mur2 SINE Alu 29 148 -1 6 1197 291 289 12 12 chr12 80247558 80247642 -41009888 - ID_B1 SINE B4 -34 190 107 6 1197 1625 86 13 0 chr12 80247696 80247929 -41009601 - L1_Mus3 LINE L1 -3 6635 6400 6 1197 309 51 0 0 chr12 80247958 80247997 -41009533 + (TATG)n Simple_repeat Simple_repeat 4 42 0 6 1197 512 248 128 0 chr12 80248011 80248144 -41009386 - B3A SINE B2 -46 152 3 6 1197 277 294 54 51 chr12 80249272 80249442 -41008088 - MIR SINE MIR -77 191 19 6 1197 834 123 0 0 chr12 80249679 80249809 -41007721 + (TA)n Simple_repeat Simple_repeat 1 130 0 6 1197 240 35 0 0 chr12 80249809 80249838 -41007692 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1197 257 229 0 20 chr12 80250054 80250103 -41007427 - ID4 SINE ID -6 77 30 6 1197 260 276 55 37 chr12 80250175 80250284 -41007246 + PB1 SINE Alu 12 122 -5 6 1197 460 186 69 0 chr12 80250530 80250632 -41006898 - B3 SINE B2 -5 211 103 6 1197 557 232 56 42 chr12 80253434 80253578 -41003952 - ID_B1 SINE B4 0 224 79 6 1197 340 183 56 0 chr12 80253746 80253817 -41003713 - B4 SINE B4 -217 75 1 6 1197 442 165 103 0 chr12 80254063 80254160 -41003370 - PB1D9 SINE Alu 0 120 14 6 1197 326 263 69 17 chr12 80254199 80254315 -41003215 - RSINE1 SINE B4 -31 134 13 6 1197 1220 42 0 0 chr12 80254727 80254871 -41002659 + B1_Mm SINE Alu 1 144 -3 6 1197 395 207 12 0 chr12 80255443 80255525 -41002005 + PB1D10 SINE Alu 35 117 0 6 1197 404 282 114 51 chr12 80255586 80255762 -41001768 + B4A SINE B4 1 190 -34 6 1197 306 0 0 0 chr12 80255830 80255864 -41001666 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1197 339 226 0 0 chr12 80255902 80255964 -41001566 + tRNA-Ala-GCY_ tRNA tRNA 3 64 -11 6 1197 438 284 131 7 chr12 80256158 80256338 -41001192 - B3 SINE B2 -13 203 1 6 1197 989 146 0 0 chr12 80256366 80256510 -41001020 - B1_Mus1 SINE Alu -2 146 3 6 1197 388 284 39 0 chr12 80256556 80256683 -41000847 - RSINE1 SINE B4 -28 137 6 6 1197 493 127 207 25 chr12 80259187 80259308 -40998222 + B1_Mur2 SINE Alu 7 149 0 6 1197 670 164 39 8 chr12 80259502 80259631 -40997899 - B3 SINE B2 -6 210 78 6 1197 1156 82 0 0 chr12 80259686 80259833 -40997697 + B1_Mus1 SINE Alu 2 148 0 6 1197 668 251 66 0 chr12 80259857 80260024 -40997506 + B3 SINE B2 27 204 -12 6 1197 376 172 94 31 chr12 80260168 80260264 -40997266 + B1F2 SINE Alu 2 103 -46 6 1197 332 267 16 49 chr12 80260264 80260289 -40997241 + MT2B LTR ERVL 165 281 -320 6 1197 1171 116 193 0 chr12 80260417 80260598 -40996932 + B3 SINE B2 1 216 0 6 1197 2065 127 201 7 chr12 80260606 80261052 -40996478 + RMER4B LTR ERVK 33 565 -20 6 1197 298 207 153 24 chr12 80261725 80261739 -40995791 - MER2 DNA MER2_type -108 237 225 6 1197 195 42 0 0 chr12 80261739 80261763 -40995767 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1197 298 207 153 24 chr12 80261763 80261872 -40995658 - MER2 DNA MER2_type -121 224 98 6 1197 307 312 62 0 chr12 80261895 80261975 -40995555 - B3A SINE B2 -11 187 103 6 1197 789 206 7 7 chr12 80261985 80262132 -40995398 - B1_Mur1 SINE Alu 0 149 3 6 1197 22 35 0 0 chr12 80262132 80262161 -40995369 + AT_rich Low_complexity Low_complexity 1 29 0 6 1197 419 272 53 0 chr12 80262498 80262612 -40994918 - PB1D7 SINE Alu 0 120 1 6 1197 505 132 44 0 chr12 80263136 80263227 -40994303 + PB1D9 SINE Alu 25 119 -1 6 1197 282 250 18 143 chr12 80263253 80263365 -40994165 + MT2B LTR ERVL 160 257 -344 6 1197 515 167 0 50 chr12 80263267 80263368 -40994162 + B1_Mur2 SINE Alu 12 107 -42 6 1197 263 330 69 102 chr12 80263474 80263488 -40994042 + B4A SINE B4 84 106 -186 6 1197 357 263 42 0 chr12 80263488 80263583 -40993947 + B1_Mus1 SINE Alu 13 111 -37 6 1197 263 330 69 102 chr12 80263583 80263690 -40993840 + B4A SINE B4 107 292 0 6 1197 765 218 88 0 chr12 80263715 80263908 -40993622 + B3 SINE B2 1 210 -6 7 1197 214 194 0 0 chr12 80265700 80265736 -40991794 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 7 1197 441 254 87 9 chr12 80266291 80266406 -40991124 + B4 SINE B4 2 125 -167 7 1197 1167 243 122 75 chr12 80266852 80267212 -40990318 + MTE2b LTR MaLR 1 377 -2 7 1197 189 347 89 41 chr12 80267410 80267533 -40989997 + L2c LINE L2 2998 3126 -261 7 1197 365 298 27 19 chr12 80267940 80268056 -40989474 - PB1D10 SINE Alu -1 116 1 7 1197 605 183 117 44 chr12 80268507 80268644 -40988886 + B1_Mur2 SINE Alu 3 149 0 7 1197 465 190 50 10 chr12 80268732 80268833 -40988697 - ID_B1 SINE B4 -1 223 119 7 1197 192 296 98 43 chr12 80269947 80270012 -40987518 - MIR3 SINE MIR -21 187 116 7 1197 1267 104 16 10 chr12 80270012 80270206 -40987324 + B2_Mm2 SINE B2 1 195 0 7 1197 192 296 98 43 chr12 80270206 80270232 -40987298 - MIR3 SINE MIR -93 115 91 7 1197 449 303 98 0 chr12 80270575 80270697 -40986833 + RSINE1 SINE B4 3 136 -29 7 1197 583 159 37 0 chr12 80271273 80271380 -40986150 - PB1D9 SINE Alu -4 116 6 7 1197 199 313 23 57 chr12 80271386 80271474 -40986056 - L2a LINE L2 -8 3418 3334 7 1197 421 273 93 0 chr12 80271506 80271678 -40985852 - MER5A DNA MER1_type 0 189 2 7 1197 914 110 73 0 chr12 80271755 80271891 -40985639 + B1_Mus1 SINE Alu 2 147 -1 7 1197 405 240 170 16 chr12 80272003 80272185 -40985345 - MIR SINE MIR -21 241 32 7 1197 589 193 20 94 chr12 80272216 80272365 -40985165 - B1_Mur1 SINE Alu 0 149 12 7 1197 552 65 0 0 chr12 80274281 80274358 -40983172 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 1197 677 223 7 0 chr12 80274617 80274756 -40982774 + B1_Mus1 SINE Alu 9 148 0 7 1197 371 235 65 45 chr12 80274772 80274889 -40982641 - B3A SINE B2 -18 180 62 7 1197 211 196 39 19 chr12 80275591 80275643 -40981887 - ID4 SINE ID 0 83 31 7 1197 694 200 72 46 chr12 80275685 80275879 -40981651 - B3 SINE B2 -12 204 6 7 1197 507 200 62 35 chr12 80277392 80277537 -40979993 - B1F SINE Alu 0 149 1 7 1197 1077 249 17 0 chr12 80278219 80278452 -40979078 - B4A SINE B4 -4 288 52 7 1197 304 282 92 20 chr12 80278642 80278794 -40978736 + MER20 DNA MER1_type 1 163 -56 7 1197 227 174 0 0 chr12 80279016 80279062 -40978468 + MTEb LTR MaLR 333 378 -1 7 1197 480 207 24 40 chr12 80279112 80279238 -40978292 + L1MB8 LINE L1 5038 5161 -985 7 1197 949 211 102 6 chr12 80279353 80279780 -40977750 + L1MB8 LINE L1 5165 5633 -545 7 1197 429 278 105 0 chr12 80279824 80279957 -40977573 + B1_Mur1 SINE Alu 2 148 -1 7 1197 402 293 0 0 chr12 80279983 80280082 -40977448 + PB1D7 SINE Alu 1 99 -21 7 1197 779 204 129 0 chr12 80280115 80280370 -40977160 + L1MB8 LINE L1 5688 5975 -203 7 1197 355 270 89 10 chr12 80280526 80280627 -40976903 + ID_B1 SINE B4 109 217 -7 7 1197 423 112 0 0 chr12 80280627 80280707 -40976823 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 7 1197 623 199 51 7 chr12 80280716 80280853 -40976677 + B1_Mur2 SINE Alu 7 149 0 7 1197 34 0 0 0 chr12 80281485 80281519 -40976011 + AT_rich Low_complexity Low_complexity 1 34 0 7 1197 279 250 42 0 chr12 80281929 80282001 -40975529 + PB1D10 SINE Alu 42 116 -1 7 1197 632 250 125 89 chr12 80282018 80282299 -40975231 + B4 SINE B4 2 292 0 7 1197 2656 40 61 3 chr12 80282439 80282766 -40974764 + ORR1A1 LTR MaLR 1 346 0 7 1197 1002 101 143 34 chr12 80282836 80283011 -40974519 + B2_Mm2 SINE B2 1 194 -1 7 1197 871 44 0 0 chr12 80283209 80283323 -40974207 + B2_Mm1a SINE B2 58 171 -22 7 1197 868 212 80 10 chr12 80283335 80283535 -40973995 - B3 SINE B2 -1 215 2 7 1197 730 157 1 16 chr12 80284276 80284420 -40973110 - B1_Mur3 SINE Alu 0 150 8 7 1197 252 225 132 36 chr12 80284420 80284503 -40973027 - B3A SINE B2 -16 182 92 7 1197 663 206 148 11 chr12 80285465 80285647 -40971883 - B3 SINE B2 -3 213 7 7 1197 939 135 0 0 chr12 80286404 80286560 -40970970 + (GGGA)n Simple_repeat Simple_repeat 2 157 0 7 1197 730 297 25 35 chr12 80286969 80287171 -40970359 + B3 SINE B2 4 203 -13 7 1197 312 27 0 0 chr12 80287197 80287234 -40970296 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1197 1300 83 44 0 chr12 80287967 80288147 -40969383 - B2_Mm2 SINE B2 -5 190 3 7 1197 672 216 36 22 chr12 80288299 80288436 -40969094 - RSINE1 SINE B4 -25 140 2 7 1197 1016 209 114 15 chr12 80288521 80288783 -40968747 + ORR1D2 LTR MaLR 5 292 -78 7 1197 1491 183 42 23 chr12 80289072 80289380 -40968150 + ORR1D1 LTR MaLR 61 374 0 7 1197 558 280 14 14 chr12 80290249 80290394 -40967136 + RSINE1 SINE B4 4 148 -17 7 1197 254 102 120 20 chr12 80290502 80290552 -40966978 + ID_B1 SINE B4 169 223 -1 7 1197 838 172 0 40 chr12 80290618 80290769 -40966761 + B1_Mm SINE Alu 2 146 -1 7 1197 371 231 20 148 chr12 80294020 80294138 -40963392 - RLTR21 LTR ERVK -225 1347 1253 7 1197 234 81 0 0 chr12 80294138 80294175 -40963355 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 7 1197 371 231 20 148 chr12 80294175 80294259 -40963271 - RLTR21 LTR ERVK -320 1252 1171 7 1197 258 327 49 49 chr12 80294291 80294455 -40963075 + MURVY-int LTR ERV1 3149 3312 -4244 7 1197 518 293 51 52 chr12 80294571 80294920 -40962610 + MURVY-int LTR ERV1 3299 3778 -3778 7 1197 1444 25 0 0 chr12 80295012 80295173 -40962357 + L1Md_F3 LINE L1 5426 5586 -297 7 1197 8776 19 2 4 chr12 80295173 80296173 -40961357 + L1Md_F3 LINE L1 5587 6584 0 7 1197 235 297 14 0 chr12 80296178 80296252 -40961278 + (CATA)n Simple_repeat Simple_repeat 4 78 0 7 1197 749 245 7 0 chr12 80296291 80296442 -40961088 - B3 SINE B2 -63 153 2 7 1197 231 306 98 39 chr12 80296473 80296575 -40960955 - MIRb SINE MIR -103 159 52 7 1197 1053 218 5 14 chr12 80296750 80296964 -40960566 + B3 SINE B2 2 213 -3 7 1197 567 198 48 0 chr12 80296994 80297120 -40960410 + B1_Mur4 SINE Alu 10 141 -9 7 1197 24 0 0 0 chr12 80297273 80297297 -40960233 + AT_rich Low_complexity Low_complexity 1 24 0 7 1197 790 242 6 0 chr12 80297304 80297461 -40960069 - B3 SINE B2 -14 202 45 7 1197 357 249 29 9 chr12 80297498 80297624 -40959906 + L1M5 LINE L1 5364 5493 -671 7 1197 1249 28 0 0 chr12 80297943 80298085 -40959445 - B1_Mus2 SINE Alu -5 142 1 7 1197 577 198 18 18 chr12 80298787 80298900 -40958630 - PB1D9 SINE Alu -7 113 1 7 1197 498 231 76 8 chr12 80298937 80299055 -40958475 - B1F SINE Alu -5 144 19 7 1197 6374 152 34 98 chr12 80299185 80300176 -40957354 + MTC-int LTR MaLR 2 1015 -243 7 1197 1306 83 0 22 chr12 80300176 80300360 -40957170 + B2_Mm2 SINE B2 2 181 -14 7 1197 6374 152 34 98 chr12 80300360 80300460 -40957070 + MTC-int LTR MaLR 1016 1057 -201 7 1197 990 198 33 19 chr12 80300460 80300671 -40956859 - B3 SINE B2 0 216 3 7 1197 6374 152 34 98 chr12 80300671 80300734 -40956796 + MTC-int LTR MaLR 1058 1079 -179 7 1197 1067 70 28 0 chr12 80300734 80300877 -40956653 - B1_Mus1 SINE Alu 0 148 2 7 1197 6374 152 34 98 chr12 80300877 80301060 -40956470 + MTC-int LTR MaLR 1080 1255 -3 7 1197 517 194 109 22 chr12 80301063 80301200 -40956330 + MTC LTR MaLR 1 149 -272 7 1197 801 70 9 9 chr12 80301182 80301298 -40956232 + B2_Mm2 SINE B2 6 121 -74 7 1197 219 69 0 0 chr12 80301299 80301328 -40956202 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1197 519 151 0 0 chr12 80301328 80301414 -40956116 + MTC LTR MaLR 121 206 -215 7 1197 6375 38 0 0 chr12 80301414 80302157 -40955373 + L1Md_T LINE L1 5840 6582 0 7 1197 339 25 0 0 chr12 80302179 80302219 -40955311 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1197 941 132 147 5 chr12 80302219 80302417 -40955113 + MTC LTR MaLR 196 421 0 7 1197 690 256 67 72 chr12 80302466 80302811 -40954719 - RLTR15 LTR ERVK -16 343 1 7 1197 467 213 39 47 chr12 80302826 80302926 -40954604 + L1M2 LINE L1 5679 5782 -518 7 1197 1396 182 135 15 chr12 80302926 80303260 -40954270 - ORR1D1 LTR MaLR 0 374 1 7 1197 467 213 39 47 chr12 80303260 80303287 -40954243 + L1M2 LINE L1 5783 5805 -495 7 1197 201 158 0 26 chr12 80303329 80303368 -40954162 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1197 458 332 48 24 chr12 80304165 80304415 -40953115 - MLT1H1 LTR MaLR 0 555 300 7 1197 278 255 11 0 chr12 80304471 80304565 -40952965 + CT-rich Low_complexity Low_complexity 3 97 0 7 1197 21 57 0 0 chr12 80304851 80304886 -40952644 + AT_rich Low_complexity Low_complexity 1 35 0 7 1197 1416 143 44 0 chr12 80305045 80305296 -40952234 + RMER4B LTR ERVK 17 278 -307 7 1197 904 137 14 14 chr12 80305298 80305439 -40952091 + B1_Mus1 SINE Alu 3 143 -5 7 1197 651 246 7 0 chr12 80305930 80306072 -40951458 + RSINE1 SINE B4 4 146 -19 7 1197 216 0 0 0 chr12 80306289 80306313 -40951217 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 7 1197 711 169 312 0 chr12 80306314 80306468 -40951062 - B3 SINE B2 -13 203 2 7 1197 542 219 49 12 chr12 80306489 80306651 -40950879 - L1ME2z LINE L1 -189 6255 6088 7 1197 409 219 24 0 chr12 80306653 80306735 -40950795 - RSINE1 SINE B4 -78 87 4 7 1197 583 325 25 0 chr12 80306866 80307023 -40950507 - RSINE1 SINE B4 0 165 5 7 1197 262 299 0 0 chr12 80307294 80307361 -40950169 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 7 1197 541 282 57 19 chr12 80307413 80307572 -40949958 + MER20 DNA MER1_type 1 165 -54 7 1197 578 274 75 38 chr12 80307713 80307899 -40949631 + B3A SINE B2 1 193 -5 7 1197 589 219 69 23 chr12 80307961 80308092 -40949438 + B1_Mur1 SINE Alu 4 140 -9 7 1197 323 302 48 41 chr12 80308611 80308756 -40948774 - MIR SINE MIR -109 153 8 7 1197 257 330 136 0 chr12 80309019 80309137 -40948393 - RSINE1 SINE B4 -31 134 1 7 1197 282 295 21 10 chr12 80309354 80309450 -40948080 - B4A SINE B4 -184 108 12 7 1197 201 200 0 20 chr12 80309514 80309565 -40947965 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 7 1197 424 237 67 17 chr12 80309572 80309692 -40947838 - PB1 SINE Alu -1 126 1 7 1197 814 188 0 0 chr12 80310586 80310724 -40946806 + B1_Mus2 SINE Alu 1 138 -9 7 1197 182 308 19 0 chr12 80311169 80311221 -40946309 + MIRb SINE MIR 195 247 -21 8 1197 2265 58 0 0 chr12 80312915 80313193 -40944337 + L1_Mus2 LINE L1 6289 6566 0 8 1197 432 97 0 0 chr12 80313193 80313255 -40944275 + (GGAAA)n Simple_repeat Simple_repeat 5 66 0 8 1197 231 318 17 43 chr12 80313261 80313376 -40944154 + L2b LINE L2 3263 3374 -1 8 1197 52 85 0 0 chr12 80314752 80314881 -40942649 + AT_rich Low_complexity Low_complexity 1 129 0 8 1197 748 135 0 38 chr12 80315408 80315539 -40941991 - B1_Mus1 SINE Alu -1 147 22 8 1197 464 210 114 40 chr12 80315593 80315742 -40941788 - RLTR42-int LTR ERVK -4200 1322 1163 8 1197 251 312 128 0 chr12 80315895 80316020 -40941510 - MIRc SINE MIR -62 206 66 8 1197 228 322 32 11 chr12 80316491 80316585 -40940945 - MIR SINE MIR -77 185 90 8 1197 1603 37 16 0 chr12 80316596 80316784 -40940746 + B2_Mm1a SINE B2 1 191 -2 8 1197 287 293 61 0 chr12 80316900 80316999 -40940531 + MIR SINE MIR 66 170 -92 8 1197 294 95 0 0 chr12 80318767 80318809 -40938721 + (TCC)n Simple_repeat Simple_repeat 2 43 0 8 1197 1991 240 27 7 chr12 80318817 80319224 -40938306 - Lx5 LINE L1 -3 7047 6633 8 1197 1181 225 77 41 chr12 80319224 80319614 -40937916 + Lx6 LINE L1 6455 6891 -569 8 1197 421 129 274 10 chr12 80320418 80320520 -40937010 - B2_Mm2 SINE B2 -20 175 47 8 1197 1149 110 40 11 chr12 80320567 80320742 -40936788 - B2_Mm2 SINE B2 -14 181 2 8 1197 313 183 0 0 chr12 80320890 80320950 -40936580 - B1_Mur4 SINE Alu -90 60 1 8 1197 443 290 0 0 chr12 80320960 80321067 -40936463 - PB1D10 SINE Alu -8 109 3 8 1197 815 137 59 86 chr12 80321159 80321311 -40936219 - B1_Mur3 SINE Alu 0 149 2 8 1197 243 0 0 0 chr12 80321457 80321484 -40936046 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1197 790 218 31 31 chr12 80321507 80321701 -40935829 + B3A SINE B2 4 197 -1 8 1197 438 280 102 9 chr12 80322190 80322406 -40935124 + Charlie4a DNA MER1_type 99 334 -174 8 1197 592 273 32 69 chr12 80322478 80322667 -40934863 - B3A SINE B2 -16 182 1 8 1197 395 273 57 14 chr12 80322672 80322813 -40934717 - B1F1 SINE Alu -1 148 2 8 1197 180 0 0 0 chr12 80323816 80323836 -40933694 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 8 1197 1651 92 31 4 chr12 80323864 80324092 -40933438 - L1_Mus1 LINE L1 -2 6565 6332 8 1197 6737 67 5 1 chr12 80324092 80325087 -40932443 + L1_Mus1 LINE L1 4991 5991 -576 8 1197 410 0 0 20 chr12 80325615 80325666 -40931864 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1197 468 0 0 0 chr12 80325667 80325719 -40931811 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1197 1375 62 7 3 chr12 80326265 80326883 -40930647 + (GAA)n Simple_repeat Simple_repeat 1 620 0 8 1197 258 164 0 0 chr12 80327507 80327562 -40929968 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1197 232 263 105 0 chr12 80327605 80327662 -40929868 - ID4_ SINE ID -10 73 11 8 1197 466 316 94 72 chr12 80327865 80328196 -40929334 + ORR1E LTR MaLR 3 340 -19 8 1197 226 258 32 0 chr12 80328342 80328404 -40929126 + MER5B DNA MER1_type 115 178 0 8 1197 271 301 74 15 chr12 80328404 80328535 -40928995 + MLT1L LTR MaLR 149 287 -323 8 1197 501 235 35 49 chr12 80328538 80328681 -40928849 + B1F1 SINE Alu 1 141 -8 8 1197 206 0 0 65 chr12 80328754 80328785 -40928745 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1197 488 297 75 21 chr12 80328787 80329028 -40928502 + MLT1L LTR MaLR 313 566 -44 8 1197 235 194 65 0 chr12 80329111 80329173 -40928357 + T-rich Low_complexity Low_complexity 1 66 0 8 1197 291 295 53 73 chr12 80329173 80329323 -40928207 - B1F1 SINE Alu -2 147 1 8 1197 524 288 90 93 chr12 80329465 80329886 -40927644 - RLTR11A2 LTR ERVK -65 462 43 8 1197 242 341 12 0 chr12 80330045 80330127 -40927403 - MLT1J2 LTR MaLR -15 433 351 8 1197 1293 171 0 5 chr12 80330173 80330390 -40927140 + B3 SINE B2 1 216 0 8 1197 1238 27 0 7 chr12 80331222 80331370 -40926160 - B1_Mus2 SINE Alu 0 147 1 8 1197 866 224 76 10 chr12 80331854 80332052 -40925478 - B3 SINE B2 -5 211 1 8 1197 635 183 35 0 chr12 80332083 80332198 -40925332 - PB1D9 SINE Alu 0 120 2 8 1197 518 279 30 54 chr12 80332248 80332415 -40925115 - RSINE1 SINE B4 0 165 3 8 1197 1240 48 0 0 chr12 80332515 80332662 -40924868 - B1_Mus1 SINE Alu 0 148 2 8 1197 539 200 0 10 chr12 80332733 80332834 -40924696 + ID_B1 SINE B4 121 220 -4 8 1197 775 259 18 12 chr12 80332843 80333007 -40924523 + B3 SINE B2 1 165 -51 8 1197 573 0 39 0 chr12 80333007 80333084 -40924446 + (CA)n Simple_repeat Simple_repeat 2 81 0 8 1197 761 274 15 64 chr12 80333084 80333122 -40924408 + B3A SINE B2 163 193 -5 8 1197 664 141 380 13 chr12 80333147 80333305 -40924225 + B3 SINE B2 1 216 0 8 1197 357 227 15 0 chr12 80335722 80335788 -40921742 - ID4_ SINE ID -7 76 10 8 1197 468 197 213 0 chr12 80336961 80337088 -40920442 + MTEa LTR MaLR 1 154 -205 8 1197 669 247 12 67 chr12 80337102 80337267 -40920263 + MTEa LTR MaLR 224 379 0 8 1197 249 108 0 0 chr12 80338068 80338105 -40919425 + (GGA)n Simple_repeat Simple_repeat 2 38 0 8 1197 265 294 146 10 chr12 80338693 80338796 -40918734 - PB1D10 SINE Alu 0 117 1 8 1197 276 185 0 0 chr12 80339480 80339534 -40917996 + (CAT)n Simple_repeat Simple_repeat 2 55 0 8 1197 691 221 14 7 chr12 80339535 80339676 -40917854 - B1F2 SINE Alu -3 146 5 8 1197 260 328 31 39 chr12 80339682 80339812 -40917718 - L2c LINE L2 -1 3386 3258 8 1197 267 202 185 37 chr12 80340268 80340376 -40917154 - L2c LINE L2 -10 3377 3254 8 1197 291 288 0 0 chr12 80340443 80340516 -40917014 - PB1D10 SINE Alu 0 117 45 8 1197 996 126 234 0 chr12 80341499 80341674 -40915856 - B3 SINE B2 0 216 1 8 1197 416 320 139 70 chr12 80342461 80343286 -40914244 + L2 LINE L2 2063 3008 -411 8 1197 380 198 0 222 chr12 80343464 80343581 -40913949 - B1_Mur1 SINE Alu -26 123 33 8 1197 278 256 25 13 chr12 80344490 80344569 -40912961 + B4 SINE B4 3 82 -210 8 1197 234 176 0 0 chr12 80344772 80344823 -40912707 + CT-rich Low_complexity Low_complexity 1 51 0 8 1197 335 122 0 0 chr12 80345541 80345590 -40911940 + B1_Mur3 SINE Alu 73 121 -28 8 1197 221 250 0 0 chr12 80345919 80345963 -40911567 + PB1D10 SINE Alu 43 86 -31 8 1197 564 288 109 28 chr12 80345979 80346190 -40911340 + B4A SINE B4 2 229 -63 8 1197 269 149 43 0 chr12 80346249 80346296 -40911234 + RSINE1 SINE B4 79 127 -38 8 1197 195 114 0 0 chr12 80346302 80346337 -40911193 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1197 254 203 36 108 chr12 80346368 80346451 -40911079 + B4A SINE B4 216 292 0 8 1197 1042 135 0 0 chr12 80346601 80346742 -40910788 + B1_Mur4 SINE Alu 1 141 -9 8 1197 675 54 0 0 chr12 80346742 80346834 -40910696 + (CAAAC)n Simple_repeat Simple_repeat 2 93 0 8 1197 228 86 0 0 chr12 80346900 80346935 -40910595 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 8 1198 200 201 15 91 chr12 80347756 80347830 -40909700 + MIRc SINE MIR 106 180 -96 8 1198 1026 186 75 0 chr12 80348042 80348230 -40909300 + B3 SINE B2 1 202 -14 8 1198 213 39 0 0 chr12 80348932 80348958 -40908572 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1198 638 58 11 0 chr12 80348958 80349044 -40908486 + (GA)n Simple_repeat Simple_repeat 1 88 0 8 1198 563 228 35 0 chr12 80349505 80349619 -40907911 - RSINE1 SINE B4 -10 155 38 8 1198 1906 192 59 0 chr12 80349840 80350214 -40907316 + MTD LTR MaLR 10 405 -14 8 1198 252 171 11 146 chr12 80350934 80351023 -40906507 - B1_Mur4 SINE Alu 0 150 74 8 1198 1085 68 172 0 chr12 80351268 80351431 -40906099 - B2_Mm2 SINE B2 -4 191 1 8 1198 1216 227 26 69 chr12 80351562 80351865 -40905665 - B4A SINE B4 -2 290 1 8 1198 633 234 35 55 chr12 80352423 80352622 -40904908 - B3 SINE B2 -1 215 21 8 1198 2216 155 17 3 chr12 80353251 80353613 -40903917 + ORR1B2 LTR MaLR 1 367 0 8 1198 1142 63 35 0 chr12 80353872 80354014 -40903516 + B1_Mus1 SINE Alu 2 148 0 8 1198 1204 97 30 70 chr12 80354016 80354216 -40903314 + B2_Mm2 SINE B2 1 192 -3 8 1198 1227 21 14 14 chr12 80354987 80355133 -40902397 + B1_Mur4 SINE Alu 5 150 0 8 1198 315 293 79 79 chr12 80355280 80355432 -40902098 + Charlie16a DNA MER1_type 145 296 -46 8 1198 180 0 0 0 chr12 80355771 80355791 -40901739 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1198 1138 62 0 46 chr12 80355791 80355939 -40901591 - B1_Mus2 SINE Alu 0 147 6 8 1198 218 192 0 0 chr12 80355959 80356011 -40901519 + A-rich Low_complexity Low_complexity 1 52 0 8 1198 825 140 0 0 chr12 80356398 80356534 -40900996 + (TA)n Simple_repeat Simple_repeat 2 137 0 8 1198 26 0 0 0 chr12 80356534 80356560 -40900970 + AT_rich Low_complexity Low_complexity 1 26 0 8 1198 838 161 16 0 chr12 80356885 80357009 -40900521 + B1F SINE Alu 5 130 -19 8 1198 23 0 0 0 chr12 80357375 80357398 -40900132 + AT_rich Low_complexity Low_complexity 1 23 0 8 1198 387 238 413 0 chr12 80357411 80357537 -40899993 - B3A SINE B2 -18 180 3 8 1198 664 245 75 19 chr12 80357548 80357760 -40899770 - ID_B1 SINE B4 0 224 1 8 1198 611 261 49 14 chr12 80358800 80358944 -40898586 + RSINE1 SINE B4 2 150 -15 8 1198 426 294 79 22 chr12 80359014 80359038 -40898492 + B4 SINE B4 62 93 -199 8 1198 718 208 0 0 chr12 80359038 80359163 -40898367 + B1_Mus2 SINE Alu 2 126 -21 8 1198 448 327 28 144 chr12 80359173 80359468 -40898062 + L1MC5 LINE L1 7433 7698 -263 9 1198 744 282 15 20 chr12 80359468 80359667 -40897863 - B3A SINE B2 0 198 1 9 1198 448 327 28 144 chr12 80359667 80359767 -40897763 + L1MC5 LINE L1 7699 7782 -179 9 1198 225 0 0 0 chr12 80359771 80359796 -40897734 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1198 262 291 63 0 chr12 80360117 80360196 -40897334 - MER82 DNA MER2_type -1 652 569 9 1198 934 180 43 33 chr12 80360214 80360337 -40897193 + MTD LTR MaLR 24 144 -275 9 1198 1620 0 15 0 chr12 80360337 80360673 -40896857 + (TG)n Simple_repeat Simple_repeat 1 341 0 9 1198 934 180 43 33 chr12 80360673 80360731 -40896799 + MTD LTR MaLR 145 207 -212 9 1198 1028 131 7 0 chr12 80360734 80360879 -40896651 + B1_Mur4 SINE Alu 1 146 -4 9 1198 537 121 0 0 chr12 80360904 80360987 -40896543 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 9 1198 695 220 220 0 chr12 80360988 80361170 -40896360 + MTD LTR MaLR 196 417 -2 9 1198 348 356 76 0 chr12 80361174 80361306 -40896224 - MER82 DNA MER2_type -71 582 441 9 1198 270 0 0 0 chr12 80361523 80361553 -40895977 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1198 577 313 26 44 chr12 80362980 80363207 -40894323 - MER58A DNA MER1_type -1 223 1 9 1198 345 221 7 162 chr12 80363441 80363597 -40893933 + PB1D7 SINE Alu 1 141 -8 9 1198 861 16 0 45 chr12 80363597 80363730 -40893800 + (CCAA)n Simple_repeat Simple_repeat 2 128 0 9 1198 897 181 39 54 chr12 80364044 80364248 -40893282 - B3 SINE B2 -15 201 1 9 1198 607 168 391 6 chr12 80365470 80365626 -40891904 + B3 SINE B2 1 216 0 9 1198 195 42 0 0 chr12 80365682 80365706 -40891824 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1198 754 174 36 7 chr12 80365706 80365845 -40891685 - B1_Mur2 SINE Alu -6 143 1 9 1198 244 336 67 0 chr12 80366033 80366137 -40891393 + L2c LINE L2 3272 3382 -5 9 1198 333 342 25 31 chr12 80366202 80366362 -40891168 + L1M5 LINE L1 5366 5524 -716 9 1198 228 222 15 45 chr12 80367763 80367829 -40889701 + GA-rich Low_complexity Low_complexity 2 65 0 9 1198 1196 82 0 0 chr12 80368237 80368384 -40889146 - B1_Mus2 SINE Alu 0 147 1 9 1198 469 308 30 48 chr12 80368446 80368613 -40888917 - RSINE1 SINE B4 0 165 2 9 1198 758 227 106 5 chr12 80368622 80368821 -40888709 - B4A SINE B4 -73 219 1 9 1198 225 209 235 15 chr12 80368838 80368906 -40888624 - B1F SINE Alu -66 83 1 9 1198 252 381 68 48 chr12 80368906 80369039 -40888491 + MER58A DNA MER1_type 41 176 -48 9 1198 181 0 0 65 chr12 80369288 80369319 -40888211 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 9 1198 314 283 111 0 chr12 80370172 80370271 -40887259 - PB1D9 SINE Alu -2 118 9 9 1198 755 307 85 23 chr12 80370700 80370763 -40886767 - L1MA5 LINE L1 -1598 6098 6035 9 1198 1038 105 0 7 chr12 80370763 80370907 -40886623 - B1_Mus1 SINE Alu -5 143 1 9 1198 1196 299 97 9 chr12 80370907 80371555 -40885975 - L1MA5 LINE L1 -1662 6034 5364 9 1198 443 246 25 34 chr12 80372564 80372682 -40884848 - PB1D10 SINE Alu 0 117 1 9 1198 882 164 0 0 chr12 80372839 80372967 -40884563 - B1_Mur4 SINE Alu -20 130 3 9 1198 772 233 62 38 chr12 80373357 80373376 -40884154 - B3 SINE B2 -1 215 199 9 1198 980 134 0 32 chr12 80373376 80373530 -40884000 - B1_Mur3 SINE Alu 0 149 1 9 1198 927 231 43 1 chr12 80373530 80373720 -40883810 - B3A SINE B2 -18 198 1 9 1198 1191 167 46 14 chr12 80375030 80375249 -40882281 - URR1A DNA MER1_type 0 226 1 9 1198 265 264 3 18 chr12 80376348 80376434 -40881096 + B4A SINE B4 1 85 -207 9 1198 1516 53 5 0 chr12 80376434 80376622 -40880908 + B2_Mm1t SINE B2 1 189 -4 9 1198 718 163 69 15 chr12 80377570 80377701 -40879829 - B1_Mus1 SINE Alu 0 148 11 9 1198 2213 128 63 11 chr12 80377881 80378230 -40879300 - MTC LTR MaLR -13 408 42 9 1198 300 53 0 0 chr12 80378234 80378272 -40879258 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1198 981 163 0 0 chr12 80378896 80379043 -40878487 - B1_Mus2 SINE Alu 0 147 1 9 1198 346 328 53 63 chr12 80379578 80379617 -40877913 - MT2B2 LTR ERVL -232 352 167 9 1198 645 216 0 20 chr12 80379617 80379766 -40877764 - B1_Mur4 SINE Alu -8 139 3 9 1198 183 184 0 0 chr12 80380787 80380825 -40876705 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1198 496 234 37 0 chr12 80382189 80382296 -40875234 + PB1D7 SINE Alu 5 115 -5 9 1198 1085 224 14 14 chr12 80382298 80382511 -40875019 + B3 SINE B2 1 213 -3 9 1198 306 180 0 0 chr12 80382526 80382587 -40874943 + GA-rich Low_complexity Low_complexity 2 62 0 9 1198 312 271 206 0 chr12 80382590 80382697 -40874833 + B1F SINE Alu 1 129 -20 9 1198 624 165 0 0 chr12 80382864 80382979 -40874551 + CT-rich Low_complexity Low_complexity 2 116 0 9 1198 665 205 19 19 chr12 80382986 80383118 -40874412 - RMER10B LTR ERVL -51 347 215 9 1198 366 23 0 0 chr12 80383118 80383161 -40874369 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1198 665 205 19 19 chr12 80383161 80383182 -40874348 - RMER10B LTR ERVL -184 214 194 9 1198 663 254 155 42 chr12 80383199 80383368 -40874162 - B3 SINE B2 -1 215 24 9 1198 1044 129 0 0 chr12 80383368 80383515 -40874015 - B1_Mus1 SINE Alu 0 148 2 9 1198 663 254 155 42 chr12 80383515 80383538 -40873992 - B3 SINE B2 -193 23 1 9 1198 260 274 16 0 chr12 80385691 80385753 -40871777 + MIRc SINE MIR 76 138 -130 9 1198 677 236 0 21 chr12 80385773 80385916 -40871614 - B1_Mur2 SINE Alu -8 141 2 9 1198 627 138 208 16 chr12 80387446 80387571 -40869959 + B1_Mur4 SINE Alu 2 150 0 9 1198 195 100 0 0 chr12 80387603 80387633 -40869897 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 9 1198 387 0 0 0 chr12 80387675 80387718 -40869812 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1198 494 235 78 42 chr12 80387719 80387861 -40869669 - RSINE1 SINE B4 -16 149 3 9 1198 186 103 0 0 chr12 80387963 80387992 -40869538 + (TTA)n Simple_repeat Simple_repeat 1 29 0 9 1198 309 135 0 0 chr12 80387993 80388045 -40869485 + (TAG)n Simple_repeat Simple_repeat 1 52 0 9 1198 606 234 0 20 chr12 80388045 80388172 -40869358 - B1_Mur4 SINE Alu -6 114 1 9 1198 230 338 80 0 chr12 80388929 80389080 -40868450 - MIR SINE MIR -10 252 90 9 1198 922 149 0 39 chr12 80389312 80389466 -40868064 + B1_Mur4 SINE Alu 2 149 -1 9 1198 1746 16 0 25 chr12 80389470 80389668 -40867862 + B2_Mm1a SINE B2 1 193 0 9 1198 222 43 62 21 chr12 80389688 80389736 -40867794 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 9 1198 1435 56 73 0 chr12 80389759 80389937 -40867593 + B2_Mm2 SINE B2 1 191 -4 9 1198 544 243 27 0 chr12 80389971 80390082 -40867448 + PB1D10 SINE Alu 3 116 -1 9 1198 1028 61 0 0 chr12 80390083 80390214 -40867316 + B1_Mus1 SINE Alu 18 148 0 9 1198 276 53 0 0 chr12 80390214 80390252 -40867278 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1198 449 343 63 41 chr12 80390298 80390617 -40866913 + MLT1A LTR MaLR 32 357 -17 9 1198 783 221 20 20 chr12 80390715 80390863 -40866667 + B1_Mur3 SINE Alu 1 148 -1 9 1198 253 289 21 57 chr12 80391375 80391488 -40866042 - PB1D10 SINE Alu -12 137 32 9 1198 1314 155 39 5 chr12 80392093 80392300 -40865230 - B3 SINE B2 0 216 3 9 1198 475 285 249 93 chr12 80392377 80392626 -40864904 + B4A SINE B4 1 288 -4 9 1198 366 298 48 0 chr12 80392762 80392866 -40864664 - PB1D10 SINE Alu -8 109 1 9 1198 207 0 0 0 chr12 80393006 80393029 -40864501 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1198 1278 48 0 0 chr12 80393029 80393176 -40864354 - B1_Mus2 SINE Alu 0 147 1 9 1198 1034 125 0 0 chr12 80394393 80394529 -40863001 + B1_Mur4 SINE Alu 2 137 -13 9 1198 180 77 0 0 chr12 80394529 80394555 -40862975 + (CAA)n Simple_repeat Simple_repeat 1 26 0 9 1198 324 320 9 28 chr12 80395133 80395239 -40862291 - PB1 SINE Alu -23 104 1 9 1198 431 240 119 10 chr12 80395326 80395427 -40862103 - PB1D7 SINE Alu -8 112 1 9 1198 243 238 93 54 chr12 80395774 80395903 -40861627 + L1MC4a LINE L1 7739 7872 -10 9 1198 1137 45 53 0 chr12 80396224 80396357 -40861173 + B1_Mm SINE Alu 1 140 -7 9 1198 315 0 0 0 chr12 80396360 80396395 -40861135 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1198 296 214 14 28 chr12 80398692 80398764 -40858766 + MIR SINE MIR 17 87 -175 9 1198 232 236 0 18 chr12 80398771 80398827 -40858703 + MIR SINE MIR 195 249 -13 9 1198 201 333 76 38 chr12 80400351 80400482 -40857048 + MIR SINE MIR 5 140 -122 9 1198 822 249 158 55 chr12 80400673 80400875 -40856655 + MTD LTR MaLR 7 257 -162 9 1198 666 68 0 0 chr12 80400875 80400963 -40856567 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 9 1198 201 74 0 0 chr12 80400964 80400991 -40856539 + (TTCG)n Simple_repeat Simple_repeat 3 29 0 9 1198 1212 29 0 21 chr12 80400991 80401133 -40856397 - B1_Mm SINE Alu -8 139 1 9 1198 822 249 158 55 chr12 80401133 80401287 -40856243 + MTD LTR MaLR 245 401 -6 9 1198 645 284 127 40 chr12 80401755 80402008 -40855522 + B4A SINE B4 4 278 -14 9 1198 1059 64 13 54 chr12 80402708 80402857 -40854673 - B1_Mus2 SINE Alu 0 147 5 9 1198 230 154 0 71 chr12 80403161 80403190 -40854340 + T-rich Low_complexity Low_complexity 24 52 0 9 1198 1339 27 0 0 chr12 80403190 80403337 -40854193 - B1_Mus1 SINE Alu 0 148 2 9 1198 230 154 0 71 chr12 80403337 80403363 -40854167 + T-rich Low_complexity Low_complexity 1 23 0 9 1198 256 330 73 81 chr12 80403613 80403860 -40853670 - L2b LINE L2 -212 3163 2919 9 1198 195 342 58 25 chr12 80403874 80403994 -40853536 + L2 LINE L2 2656 2779 -640 9 1198 654 137 60 0 chr12 80404001 80404118 -40853412 - URR1B DNA MER1_type 0 225 102 9 1198 1649 48 5 0 chr12 80404503 80404690 -40852840 + B2_Mm1a SINE B2 2 189 -4 9 1198 382 299 92 87 chr12 80404867 80405178 -40852352 + B4A SINE B4 1 292 0 9 1198 228 357 10 39 chr12 80405402 80405504 -40852026 - MLT1F1 LTR MaLR -7 482 384 9 1198 265 370 33 0 chr12 80405705 80405797 -40851733 - MLT1F1 LTR MaLR -428 141 47 9 1198 217 240 53 0 chr12 80405843 80405918 -40851612 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1198 180 97 0 0 chr12 80405988 80406019 -40851511 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1198 266 309 53 11 chr12 80406021 80406116 -40851414 - ID_B1 SINE B4 -122 102 4 1 1198 492 282 53 63 chr12 80406745 80407048 -40850482 - L1ME3B LINE L1 -292 5948 5649 1 1198 637 305 48 5 chr12 80407048 80407236 -40850294 + MER58A DNA MER1_type 1 196 -28 1 1198 329 376 42 6 chr12 80407246 80407412 -40850118 - L1ME3B LINE L1 -591 5649 5478 1 1198 316 342 84 0 chr12 80407615 80407770 -40849760 - L1MB8 LINE L1 -156 6022 5855 1 1198 258 213 0 0 chr12 80407799 80407846 -40849684 - B3A SINE B2 -150 48 2 1 1198 25 51 0 0 chr12 80407896 80407935 -40849595 + AT_rich Low_complexity Low_complexity 1 39 0 1 1198 847 244 262 3 chr12 80408087 80408351 -40849179 - MLT1F LTR MaLR -23 525 204 1 1198 402 21 0 0 chr12 80408351 80408398 -40849132 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1198 612 297 172 13 chr12 80408398 80408560 -40848970 - MLT1F LTR MaLR -345 203 4 1 1198 2355 131 44 57 chr12 80408684 80409073 -40848457 + ORR1C2 LTR MaLR 1 384 0 1 1198 990 291 81 19 chr12 80409229 80409600 -40847930 + MLT1E2 LTR MaLR 232 625 -2 1 1198 288 340 97 62 chr12 80410026 80410252 -40847278 - MER106A DNA MER1_type 0 236 3 1 1198 561 237 127 0 chr12 80410314 80410432 -40847098 + RSINE1 SINE B4 2 134 -31 1 1198 261 0 0 0 chr12 80410445 80410474 -40847056 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 1 1198 318 26 0 0 chr12 80410996 80411035 -40846495 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1198 215 178 22 0 chr12 80411160 80411205 -40846325 + B4 SINE B4 2 47 -245 1 1198 366 23 0 0 chr12 80411382 80411425 -40846105 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1198 387 0 0 0 chr12 80412352 80412395 -40845135 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1198 852 176 8 0 chr12 80413029 80413160 -40844370 + B1_Mur1 SINE Alu 13 144 -5 1 1198 379 284 64 50 chr12 80413170 80413311 -40844219 + RSINE1 SINE B4 2 144 -21 1 1198 356 248 0 45 chr12 80413442 80413552 -40843978 + Charlie7 DNA MER1_type 1133 1237 -1375 1 1198 245 368 13 0 chr12 80413578 80413654 -40843876 - ID4_ SINE ID -4 79 3 1 1198 293 280 87 29 chr12 80413708 80413811 -40843719 - B1_Mus1 SINE Alu -33 115 7 1 1198 303 96 0 0 chr12 80413817 80413869 -40843661 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1198 1231 55 7 0 chr12 80413870 80414016 -40843514 - B1_Mm SINE Alu 0 147 1 1 1198 322 321 12 0 chr12 80414111 80414192 -40843338 + ID4_ SINE ID 2 83 0 1 1198 325 258 120 56 chr12 80414255 80414489 -40843041 + L1ME2z LINE L1 6157 6405 -39 1 1198 608 169 145 8 chr12 80415077 80415208 -40842322 + B1_Mur1 SINE Alu 1 149 0 1 1198 964 42 0 0 chr12 80415212 80415331 -40842199 + B1_Mm SINE Alu 26 144 -3 1 1198 194 0 39 0 chr12 80415331 80415357 -40842173 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1198 491 286 90 17 chr12 80415530 80415708 -40841822 - MER105 DNA DNA -2 202 12 1 1198 802 211 268 93 chr12 80416243 80416556 -40840974 + MTE2b LTR MaLR 1 368 -11 1 1198 791 174 0 55 chr12 80417417 80417431 -40840099 - B1_Mur2 SINE Alu 0 149 138 1 1198 636 14 0 0 chr12 80417431 80417504 -40840026 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 1 1198 791 174 0 55 chr12 80417504 80417635 -40839895 - B1_Mur2 SINE Alu -12 137 12 1 1198 589 92 10 10 chr12 80418667 80418766 -40838764 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 1 1198 251 186 0 214 chr12 80418838 80418927 -40838603 - B4 SINE B4 0 292 223 1 1198 940 193 6 28 chr12 80418959 80419135 -40838395 - B3 SINE B2 -44 172 1 1 1198 831 21 0 0 chr12 80419146 80419243 -40838287 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 1 1198 821 237 0 0 chr12 80419261 80419434 -40838096 - B4 SINE B4 -112 180 8 1 1198 235 93 225 62 chr12 80419454 80419534 -40837996 - PB1D10 SINE Alu -14 103 11 1 1198 1041 157 92 20 chr12 80419849 80420044 -40837486 - B3 SINE B2 -6 210 2 1 1198 325 291 77 31 chr12 80420460 80420719 -40836811 - L1MEc LINE L1 -6103 297 27 1 1198 458 326 110 12 chr12 80421284 80421529 -40836001 + L2 LINE L2 2142 2410 -1009 1 1198 477 0 0 0 chr12 80421607 80421660 -40835870 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1198 381 43 0 0 chr12 80421660 80421706 -40835824 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1198 196 380 144 11 chr12 80421758 80421939 -40835591 + L2 LINE L2 2597 2801 -618 1 1198 384 103 0 0 chr12 80421976 80422034 -40835496 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1198 389 266 123 48 chr12 80422036 80422182 -40835348 - B4A SINE B4 -14 278 122 1 1198 918 245 14 5 chr12 80422215 80422424 -40835106 - B3 SINE B2 -1 215 5 1 1198 28 0 0 0 chr12 80422441 80422469 -40835061 + AT_rich Low_complexity Low_complexity 1 28 0 1 1198 255 57 29 0 chr12 80422846 80422881 -40834649 - MTC LTR MaLR -8 413 378 1 1198 267 31 0 0 chr12 80422881 80422913 -40834617 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 1198 225 179 50 67 chr12 80422913 80422937 -40834593 - MTC LTR MaLR -44 375 353 1 1198 408 143 0 0 chr12 80422939 80423009 -40834521 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 1 1198 2023 148 36 0 chr12 80423035 80423365 -40834165 - MTC LTR MaLR -79 342 1 1 1198 1236 61 0 13 chr12 80423523 80423672 -40833858 - B1_Mm SINE Alu 0 147 1 1 1198 24 32 0 0 chr12 80423893 80423924 -40833606 + AT_rich Low_complexity Low_complexity 1 31 0 1 1198 357 24 0 0 chr12 80424386 80424428 -40833102 + (CCA)n Simple_repeat Simple_repeat 1 42 0 1 1198 553 138 46 0 chr12 80424516 80424646 -40832884 + CT-rich Low_complexity Low_complexity 3 138 0 1 1198 207 0 0 0 chr12 80424646 80424669 -40832861 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 1198 1188 37 0 7 chr12 80424670 80424806 -40832724 - B1_Mm SINE Alu -12 135 1 1 1198 1516 76 16 0 chr12 80426197 80426382 -40831148 + B2_Mm2 SINE B2 2 189 -6 1 1198 434 18 18 0 chr12 80427023 80427078 -40830452 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1198 212 194 194 0 chr12 80427108 80427170 -40830360 - ID4 SINE ID -6 77 4 1 1198 1410 71 43 16 chr12 80427172 80427359 -40830171 - B2_Mm2 SINE B2 -3 192 1 1 1198 284 359 48 27 chr12 80427378 80427524 -40830006 - B1F SINE Alu 0 149 1 1 1198 1139 209 5 23 chr12 80427584 80427804 -40829726 - B3 SINE B2 0 216 1 1 1198 255 304 66 25 chr12 80429031 80429157 -40828373 - PB1D10 SINE Alu -18 131 5 1 1198 243 221 68 81 chr12 80429097 80429171 -40828359 - B4A SINE B4 -139 153 81 1 1198 332 297 92 46 chr12 80429855 80429918 -40827612 + ID_B1 SINE B4 30 210 -14 1 1198 539 167 64 18 chr12 80429918 80430028 -40827502 + B1F2 SINE Alu 21 135 -14 1 1198 28 79 0 0 chr12 80430418 80430481 -40827049 + AT_rich Low_complexity Low_complexity 1 63 0 1 1198 218 272 37 0 chr12 80430974 80431055 -40826475 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 1198 1836 167 112 0 chr12 80431524 80431871 -40825659 - ORR1B1 LTR MaLR -8 386 1 1 1198 1238 283 101 46 chr12 80433224 80433721 -40823809 + MER77 LTR ERVL 1 524 -83 1 1198 456 195 137 43 chr12 80433901 80434062 -40823468 + L1MD3 LINE L1 7819 7994 -1 1 1198 189 331 98 23 chr12 80434151 80434324 -40823206 + L2 LINE L2 2507 2692 -727 1 1198 250 321 125 15 chr12 80434387 80434523 -40823007 + MIRb SINE MIR 109 259 -9 1 1198 5376 137 68 45 chr12 80434752 80435634 -40821896 - RMER19B LTR ERVK 0 902 1 1 1198 235 293 0 17 chr12 80435659 80435718 -40821812 - L2c LINE L2 -35 3352 3295 1 1198 790 217 55 62 chr12 80437103 80437378 -40820152 + L1MA9 LINE L1 5090 5362 -778 1 1198 486 228 69 10 chr12 80437381 80437483 -40820047 + PB1D10 SINE Alu 1 108 -9 1 1198 1382 268 68 11 chr12 80437483 80437933 -40819597 + L1MA9 LINE L1 5683 6158 -154 1 1198 213 325 0 13 chr12 80438096 80438174 -40819356 - B3 SINE B2 -130 86 10 1 1198 580 56 22 0 chr12 80438177 80438266 -40819264 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1 1198 350 261 43 0 chr12 80438271 80438340 -40819190 - ID4_ SINE ID -10 73 2 1 1198 192 317 96 48 chr12 80439158 80439304 -40818226 + MIR3 SINE MIR 16 168 -40 1 1198 35 0 0 0 chr12 80439348 80439383 -40818147 + AT_rich Low_complexity Low_complexity 1 35 0 1 1198 770 221 73 26 chr12 80439460 80439651 -40817879 - B3 SINE B2 -12 204 5 1 1198 430 259 114 0 chr12 80440100 80440231 -40817299 - B3A SINE B2 -51 147 2 1 1198 651 232 14 7 chr12 80440243 80440382 -40817148 - B1F SINE Alu -7 142 3 1 1198 22 0 0 0 chr12 80440689 80440711 -40816819 + AT_rich Low_complexity Low_complexity 1 22 0 1 1198 356 0 23 0 chr12 80441166 80441210 -40816320 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1 1198 231 36 0 0 chr12 80441210 80441237 -40816293 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1198 603 220 78 7 chr12 80441239 80441381 -40816149 - B3A SINE B2 -46 152 1 1 1198 269 274 137 0 chr12 80441421 80441516 -40816014 + MER5A1 DNA MER1_type 2 109 -57 1 1198 915 269 59 39 chr12 80441594 80441974 -40815556 - MTE2a LTR MaLR 0 419 20 1 1198 820 206 14 14 chr12 80441986 80442134 -40815396 + B1_Mur2 SINE Alu 1 148 -1 1 1198 291 316 61 54 chr12 80442339 80442486 -40815044 + AmnSINE1 SINE SINE 220 367 -208 1 1198 509 329 221 29 chr12 80443204 80443792 -40813738 + Charlie1 DNA MER1_type 1796 2496 -285 1 1198 762 240 70 25 chr12 80443813 80444014 -40813516 + B3 SINE B2 2 211 -5 1 1198 24 32 0 0 chr12 80444072 80444103 -40813427 + AT_rich Low_complexity Low_complexity 1 31 0 1 1198 454 197 55 76 chr12 80444103 80444248 -40813282 + ID_B1 SINE B4 82 219 -5 1 1198 266 308 60 23 chr12 80444235 80444368 -40813162 + Charlie1 DNA MER1_type 2618 2755 -26 1 1198 639 212 237 24 chr12 80444495 80444664 -40812866 - B3 SINE B2 -9 207 3 1 1198 408 318 117 6 chr12 80444802 80444973 -40812557 - MER3 DNA MER1_type 0 209 20 1 1198 543 332 91 20 chr12 80445162 80445556 -40811974 - L1MC4a LINE L1 -1085 6797 6376 1 1198 451 278 124 28 chr12 80445987 80446165 -40811365 - B3A SINE B2 0 198 4 1 1198 420 216 0 0 chr12 80446276 80446378 -40811152 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 1198 361 320 68 38 chr12 80446555 80446688 -40810842 - MER21B LTR ERV1 -466 397 261 1 1198 346 318 114 15 chr12 80446759 80446890 -40810640 - MER21B LTR ERV1 -709 154 11 1 1198 314 122 2 58 chr12 80448162 80448232 -40809298 - B1_Mm SINE Alu 0 149 85 1 1198 205 267 0 0 chr12 80448977 80449022 -40808508 + GA-rich Low_complexity Low_complexity 5 49 0 1 1198 408 285 32 6 chr12 80450379 80450497 -40807033 - ID_B1 SINE B4 -140 152 29 1 1198 1841 260 112 40 chr12 80450511 80450852 -40806678 - L1MB8 LINE L1 -7 6171 5822 1 1198 216 0 0 0 chr12 80450852 80450876 -40806654 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1198 1209 65 0 0 chr12 80450876 80451014 -40806516 - B1_Mm SINE Alu -9 138 1 1 1198 1841 246 123 35 chr12 80451014 80451541 -40805989 - L1MB8 LINE L1 -357 5821 5240 1 1198 285 297 83 119 chr12 80451574 80451637 -40805893 - B3A SINE B2 -2 214 5 1 1198 589 323 19 0 chr12 80451637 80451792 -40805738 - RSINE1 SINE B4 -2 163 6 1 1198 231 214 22 56 chr12 80451811 80451900 -40805630 - Lx8 LINE L1 -1 7472 7387 1 1198 1207 62 0 7 chr12 80452118 80452264 -40805266 + B1_Mus1 SINE Alu 2 146 -2 1 1198 261 83 0 0 chr12 80452265 80452301 -40805229 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1198 348 24 0 0 chr12 80452811 80452852 -40804678 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1198 424 217 14 30 chr12 80453041 80453146 -40804384 + PB1D10 SINE Alu 9 117 0 1 1198 387 286 42 8 chr12 80454668 80454788 -40802742 - MLT1A LTR MaLR -250 124 1 1 1198 306 0 0 0 chr12 80454975 80455009 -40802521 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1198 217 308 31 0 chr12 80457981 80458046 -40799484 - ID4_ SINE ID -16 67 1 1 1198 425 195 26 0 chr12 80458832 80458909 -40798621 + ID4 SINE ID 2 80 -3 1 1198 187 278 130 0 chr12 80458948 80459002 -40798528 + MER5A DNA MER1_type 90 150 -39 1 1198 219 308 12 37 chr12 80459216 80459297 -40798233 + MIR SINE MIR 69 147 -115 1 1198 183 80 0 0 chr12 80459344 80459369 -40798161 + (CAG)n Simple_repeat Simple_repeat 2 26 0 1 1198 2121 92 39 84 chr12 80459545 80459901 -40797629 - Lx LINE L1 0 6654 6315 1 1198 981 195 101 20 chr12 80460477 80460676 -40796854 - B3 SINE B2 0 216 2 1 1198 210 208 0 0 chr12 80460679 80460727 -40796803 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1198 267 352 33 0 chr12 80460901 80460992 -40796538 - L2b LINE L2 -25 3350 3257 1 1198 954 285 50 25 chr12 80461054 80461335 -40796195 + B4 SINE B4 5 292 0 1 1198 910 281 43 12 chr12 80461573 80461829 -40795701 + B4A SINE B4 8 271 -21 1 1198 273 262 62 73 chr12 80462358 80462472 -40795058 + Charlie4z DNA MER1_type 52 142 -25 1 1198 448 280 9 0 chr12 80462678 80462785 -40794745 + RSINE1 SINE B4 20 127 -38 1 1198 255 125 0 0 chr12 80463094 80463134 -40794396 + (CACCAT)n Simple_repeat Simple_repeat 5 44 0 1 1198 914 202 88 5 chr12 80463303 80463497 -40794033 - B3 SINE B2 -6 210 1 1 1198 467 256 28 35 chr12 80463902 80464044 -40793486 - MLT1A1 LTR MaLR 0 408 268 1 1198 278 209 43 17 chr12 80464339 80464456 -40793074 + CT-rich Low_complexity Low_complexity 1 120 0 1 1198 366 330 0 10 chr12 80464621 80464719 -40792811 - PB1 SINE Alu -28 99 3 1 1198 340 391 0 0 chr12 80464747 80464857 -40792673 + PB1 SINE Alu 1 110 -17 1 1198 1062 207 64 0 chr12 80464903 80465106 -40792424 - B3 SINE B2 0 216 1 1 1198 512 295 114 0 chr12 80467852 80468018 -40789512 - MER3 DNA MER1_type -5 204 20 1 1198 1406 207 45 70 chr12 80468128 80468486 -40789044 + MTE2b LTR MaLR 1 349 -30 1 1198 1015 39 23 0 chr12 80468520 80468649 -40788881 - B1_Mm SINE Alu -10 137 6 1 1198 249 277 8 0 chr12 80468548 80468667 -40788863 - ORR1B1-int LTR MaLR -755 754 635 1 1198 3827 243 186 119 chr12 80468699 80469234 -40788296 + MTE2a-int LTR MaLR 3 695 -885 1 1198 1354 77 54 5 chr12 80469234 80469418 -40788112 + B2_Mm2 SINE B2 2 194 -1 1 1198 3827 243 186 119 chr12 80469418 80470361 -40787169 + MTE2a-int LTR MaLR 696 1580 0 1 1198 993 243 99 114 chr12 80470361 80470746 -40786784 + MTE2a LTR MaLR 1 379 0 1 1198 193 292 68 14 chr12 80471000 80471073 -40786457 - L2a LINE L2 -373 3053 2977 1 1198 325 196 43 121 chr12 80471187 80471303 -40786227 + PB1 SINE Alu 21 127 0 1 1198 699 289 25 6 chr12 80471394 80471554 -40785976 - RSINE1 SINE B4 -2 163 1 1 1198 434 319 130 12 chr12 80471636 80471798 -40785732 + B3A SINE B2 1 181 -17 1 1198 1566 75 0 53 chr12 80471976 80472201 -40785329 + L1_Mus1 LINE L1 6355 6567 0 1 1198 207 0 0 0 chr12 80472665 80472688 -40784842 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1198 1134 60 0 0 chr12 80472689 80472823 -40784707 - B1_Mus2 SINE Alu -12 135 2 1 1198 216 188 62 0 chr12 80472956 80473004 -40784526 - ID SINE ID -169 55 5 1 1198 467 330 35 79 chr12 80473192 80473419 -40784111 + B4A SINE B4 3 219 -73 1 1198 182 307 100 23 chr12 80474577 80474707 -40782823 + L2 LINE L2 2499 2638 -781 1 1198 237 65 0 0 chr12 80474982 80475013 -40782517 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 1198 1139 78 0 0 chr12 80475014 80475167 -40782363 - B2_Mm2 SINE B2 -41 154 2 1 1198 521 224 56 56 chr12 80475433 80475575 -40781955 + B1F SINE Alu 1 142 -7 1 1198 371 203 0 15 chr12 80475913 80475978 -40781552 + tRNA-Ala-GCA tRNA tRNA 3 66 -9 1 1198 245 283 93 42 chr12 80475978 80476023 -40781507 + BC1_Mm scRNA scRNA 22 128 -24 1 1198 485 248 112 8 chr12 80476028 80476162 -40781368 + B1F SINE Alu 2 149 0 1 1198 234 0 0 0 chr12 80476686 80476712 -40780818 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1198 21 0 0 0 chr12 80477978 80477999 -40779531 + AT_rich Low_complexity Low_complexity 1 21 0 1 1199 197 291 0 0 chr12 80479183 80479238 -40778292 + MIRm SINE MIR 96 150 -126 1 1199 356 253 13 0 chr12 80480045 80480120 -40777410 - ID4 SINE ID -6 77 2 1 1199 6038 57 3 0 chr12 80480420 80481134 -40776396 - L1Md_F2 LINE L1 0 6582 5867 1 1199 338 216 80 0 chr12 80482341 80482429 -40775101 - MLT1F2 LTR MaLR 0 560 466 1 1199 180 0 0 0 chr12 80482577 80482597 -40774933 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1199 773 255 30 30 chr12 80482777 80482979 -40774551 - B3 SINE B2 -13 203 2 1 1199 396 40 0 0 chr12 80483765 80483815 -40773715 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1199 342 45 0 0 chr12 80483815 80483859 -40773671 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1199 226 229 40 54 chr12 80484231 80484305 -40773225 - Lx7 LINE L1 -4 7692 7620 1 1199 2130 204 158 33 chr12 80484346 80484394 -40773136 - Lx7 LINE L1 -213 7483 7416 1 1199 207 0 0 0 chr12 80484394 80484417 -40773113 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1199 2130 204 158 33 chr12 80484417 80484971 -40772559 - Lx7 LINE L1 -281 7415 6806 1 1199 426 127 0 0 chr12 80486596 80486667 -40770863 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1199 772 242 46 35 chr12 80486668 80486865 -40770665 - B4 SINE B4 -23 269 71 1 1199 287 321 9 78 chr12 80487301 80487416 -40770114 - AluG_3 SINE Alu -91 220 14 1 1199 355 319 94 73 chr12 80487510 80487936 -40769594 - L1MC4 LINE L1 -30 8012 7578 1 1199 600 14 0 0 chr12 80489183 80489252 -40768278 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 1 1199 23 33 0 0 chr12 80490664 80490694 -40766836 + AT_rich Low_complexity Low_complexity 1 30 0 1 1199 571 200 144 15 chr12 80490707 80490839 -40766691 - B1_Mur4 SINE Alu -1 149 1 1 1199 210 37 0 0 chr12 80491281 80491308 -40766222 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1199 839 241 53 90 chr12 80491324 80491688 -40765842 - L1_Mur1 LINE L1 -127 5759 5411 1 1199 675 217 20 59 chr12 80491691 80491843 -40765687 + B1_Mur1 SINE Alu 2 147 -2 1 1199 201 178 0 0 chr12 80491923 80491968 -40765562 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 1 1199 516 270 0 0 chr12 80491973 80492073 -40765457 - B4A SINE B4 -4 288 189 1 1199 972 246 9 19 chr12 80492499 80492714 -40764816 - B3 SINE B2 -3 213 1 1 1199 306 0 0 0 chr12 80492744 80492778 -40764752 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1199 654 257 40 0 chr12 80492781 80492929 -40764601 - B3A SINE B2 -44 154 1 1 1199 357 349 184 18 chr12 80493012 80493523 -40764007 + L3 LINE CR1 3378 3973 -516 1 1199 1106 88 6 0 chr12 80493820 80493980 -40763550 + (GGAA)n Simple_repeat Simple_repeat 3 163 0 1 1199 402 85 0 33 chr12 80493980 80494041 -40763489 + B1_Mus1 SINE Alu 2 60 -88 1 1199 992 151 0 43 chr12 80494041 80494275 -40763255 + (CAGAGA)n Simple_repeat Simple_repeat 1 223 0 1 1199 183 247 0 0 chr12 80494305 80494378 -40763152 + GA-rich Low_complexity Low_complexity 2 74 0 1 1199 535 182 19 66 chr12 80494398 80494504 -40763026 + B1_Mus2 SINE Alu 42 142 -5 1 1199 1189 119 73 6 chr12 80495191 80495368 -40762162 - B2_Mm2 SINE B2 -6 189 1 1 1199 198 0 0 0 chr12 80495526 80495548 -40761982 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1199 371 98 0 16 chr12 80495548 80495610 -40761920 - B1_Mus2 SINE Alu 0 147 87 1 1199 877 261 34 0 chr12 80495906 80496113 -40761417 - B3 SINE B2 0 216 3 1 1199 246 218 36 18 chr12 80496122 80496178 -40761352 + MER5A DNA MER1_type 132 188 -1 1 1199 2976 239 53 21 chr12 80496301 80496981 -40760549 - Lx5 LINE L1 0 7050 6349 1 1199 10560 134 27 69 chr12 80496983 80500000 -40757530 - Lx LINE L1 0 6654 3795 1 1199 860 184 24 0 chr12 80500000 80500168 -40757362 - L1M2 LINE L1 -2317 3826 3655 1 1199 14941 94 25 20 chr12 80500169 80503411 -40754119 - L1VL2 LINE L1 -282 3333 67 2 1199 22 35 0 0 chr12 80503757 80503786 -40753744 + AT_rich Low_complexity Low_complexity 1 29 0 3 1199 753 265 191 4 chr12 80503883 80504129 -40753401 - B4A SINE B4 0 292 1 4 1199 428 191 131 0 chr12 80504688 80504772 -40752758 - B3A SINE B2 -101 97 3 5 1199 430 284 18 27 chr12 80504909 80505021 -40752509 + PB1D7 SINE Alu 9 119 -1 6 1199 790 268 65 73 chr12 80506632 80507014 -40750516 + MTE2a LTR MaLR 1 379 0 7 1199 1084 63 21 0 chr12 80507262 80507404 -40750126 + B1_Mus2 SINE Alu 2 146 -1 8 1199 336 133 0 0 chr12 80507404 80507464 -40750066 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 9 1199 402 291 174 28 chr12 80507476 80507909 -40749621 - L1ME3A LINE L1 -143 6030 5535 1 1199 1125 155 14 19 chr12 80507988 80508199 -40749331 - ORR1C2 LTR MaLR -1 383 174 1 1199 222 143 0 0 chr12 80508199 80508248 -40749282 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1199 235 250 0 20 chr12 80508443 80508492 -40749038 + ID4_ SINE ID 12 59 -24 1 1199 501 284 26 0 chr12 80508468 80508584 -40748946 + ID_B1 SINE B4 67 185 -39 1 1199 356 264 87 11 chr12 80508503 80508595 -40748935 + B1F1 SINE Alu 24 122 -27 1 1199 803 255 62 8 chr12 80508643 80508900 -40748630 - L1MB7 LINE L1 -74 6110 5840 1 1199 294 228 0 0 chr12 80509294 80509351 -40748179 + PB1D10 SINE Alu 24 80 -37 1 1199 282 234 0 0 chr12 80509435 80509563 -40747967 + (CAGA)n Simple_repeat Simple_repeat 3 130 0 1 1199 365 86 0 17 chr12 80509619 80509678 -40747852 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 1 1199 217 235 0 150 chr12 80510547 80510627 -40746903 - ID_B1 SINE B4 -63 161 94 2 1199 512 204 0 92 chr12 80510753 80510872 -40746658 - ORR1C2 LTR MaLR -269 110 3 1 1199 1086 209 15 10 chr12 80510951 80511154 -40746376 - B3 SINE B2 -11 205 2 2 1199 419 306 80 30 chr12 80511526 80511725 -40745805 - MER3 DNA MER1_type 0 209 1 2 1199 264 309 21 0 chr12 80513023 80513117 -40744413 + (TG)n Simple_repeat Simple_repeat 2 97 0 2 1199 186 71 0 0 chr12 80513713 80513741 -40743789 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1199 180 0 0 0 chr12 80514908 80514928 -40742602 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1199 471 152 12 228 chr12 80515165 80515336 -40742194 + B1_Mus1 SINE Alu 2 135 -13 2 1199 11167 60 4 31 chr12 80515341 80515691 -40741839 + Lx3_Mus LINE L1 4344 4663 -1223 2 1199 1145 52 0 0 chr12 80515691 80515827 -40741703 - B1_Mus2 SINE Alu -9 138 3 2 1199 11167 59 8 29 chr12 80515827 80517154 -40740376 + Lx3_Mus LINE L1 4664 5972 -1037 2 1199 4439 71 109 5 chr12 80517154 80517788 -40739742 + Lx3_Mus LINE L1 6302 7001 -8 2 1199 329 175 204 58 chr12 80518337 80518440 -40739090 + PB1D9 SINE Alu 1 118 -2 2 1199 1522 196 82 13 chr12 80518877 80519269 -40738261 + MTD LTR MaLR 1 419 0 3 1199 233 365 113 5 chr12 80519273 80519485 -40738045 + MIR SINE MIR 4 238 -24 3 1199 333 214 29 0 chr12 80519701 80519771 -40737759 - ID4 SINE ID -11 72 1 3 1199 24 0 0 0 chr12 80519797 80519821 -40737709 + AT_rich Low_complexity Low_complexity 1 24 0 3 1199 183 80 0 0 chr12 80520132 80520157 -40737373 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 3 1199 590 275 14 0 chr12 80520166 80520308 -40737222 - RSINE1 SINE B4 -18 147 4 3 1199 832 336 60 8 chr12 80520413 80520764 -40736766 - MER63B DNA AcHobo -39 397 29 3 1199 237 285 75 14 chr12 80520802 80520948 -40736582 + L1M5 LINE L1 5626 5780 -344 3 1199 23 33 0 0 chr12 80521298 80521328 -40736202 + AT_rich Low_complexity Low_complexity 1 30 0 3 1199 441 0 0 0 chr12 80522525 80522574 -40734956 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1199 288 0 0 0 chr12 80522807 80522839 -40734691 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1199 803 252 89 56 chr12 80522860 80523129 -40734401 - B4A SINE B4 -14 278 1 4 1199 422 378 71 0 chr12 80523253 80523449 -40734081 - MLT1J LTR MaLR -169 343 134 4 1199 302 0 26 0 chr12 80523936 80523974 -40733556 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1199 282 338 0 0 chr12 80524427 80524504 -40733026 + ID4_ SINE ID 6 82 -1 4 1199 1349 126 116 73 chr12 80525823 80526098 -40731432 - ORR1B1 LTR MaLR -67 327 41 4 1199 373 252 28 28 chr12 80526102 80526208 -40731322 + MIRb SINE MIR 95 200 -68 4 1199 679 236 141 12 chr12 80526218 80526381 -40731149 + B3 SINE B2 8 191 -25 4 1199 22 0 0 0 chr12 80526386 80526408 -40731122 + AT_rich Low_complexity Low_complexity 1 22 0 4 1199 219 316 116 55 chr12 80527178 80527342 -40730188 + L2b LINE L2 3195 3368 -7 4 1199 3732 37 5 0 chr12 80527762 80528196 -40729334 + RLTR10C LTR ERVK 1 436 0 5 1199 285 297 22 0 chr12 80528444 80528535 -40728995 + MER44B DNA MER2_type 20 112 -438 5 1199 30 45 0 0 chr12 80528535 80528579 -40728951 + AT_rich Low_complexity Low_complexity 1 44 0 5 1199 401 280 159 0 chr12 80528585 80528742 -40728788 - B3A SINE B2 -16 182 1 5 1199 356 278 130 14 chr12 80528796 80528942 -40728588 + MER44B DNA MER2_type 388 550 0 5 1199 528 193 0 20 chr12 80528973 80529083 -40728447 + B1_Mur1 SINE Alu 45 147 -2 5 1199 546 300 15 0 chr12 80529865 80530065 -40727465 + Lx7 LINE L1 7088 7290 -406 5 1199 33 43 0 0 chr12 80531959 80532006 -40725524 + AT_rich Low_complexity Low_complexity 1 47 0 5 1199 986 330 78 35 chr12 80533209 80533815 -40723715 + MER63C DNA AcHobo 1 632 -298 5 1199 234 0 0 0 chr12 80536472 80536498 -40721032 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1199 777 67 0 0 chr12 80537026 80537130 -40720400 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 5 1199 219 299 0 13 chr12 80538269 80538347 -40719183 + CT-rich Low_complexity Low_complexity 4 80 0 6 1199 303 266 10 41 chr12 80538348 80538446 -40719084 - HAL1-3A_ME LINE L1 -825 2033 1939 6 1199 224 59 29 0 chr12 80539771 80539805 -40717725 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 6 1199 353 225 67 152 chr12 80539821 80539999 -40717531 - RSINE1 SINE B4 0 165 3 6 1199 1199 47 14 0 chr12 80540281 80540429 -40717101 + B1_Mur4 SINE Alu 1 150 0 6 1199 285 98 0 0 chr12 80540429 80540470 -40717060 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1199 395 271 128 24 chr12 80541658 80541783 -40715747 + B1F SINE Alu 10 147 -2 6 1199 261 0 0 0 chr12 80541861 80541890 -40715640 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1199 258 262 60 48 chr12 80543354 80543438 -40714092 - PB1D7 SINE Alu -9 111 27 6 1199 435 274 48 10 chr12 80543514 80543617 -40713913 - PB1D10 SINE Alu -8 109 3 6 1199 314 284 79 84 chr12 80543768 80544053 -40713477 - MLT1A1 LTR MaLR -23 385 130 7 1199 424 276 77 44 chr12 80544131 80544409 -40713121 - L1ME2 LINE L1 -53 6111 5813 7 1199 388 321 188 11 chr12 80544448 80544832 -40712698 - L1ME2 LINE L1 -394 5770 5326 7 1199 543 315 14 0 chr12 80545415 80545561 -40711969 - B3 SINE B2 0 216 69 7 1199 1045 110 7 0 chr12 80545934 80546080 -40711450 - B1_Mm SINE Alu 0 147 1 7 1199 195 235 0 0 chr12 80546182 80546233 -40711297 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1199 707 182 22 14 chr12 80546473 80546612 -40710918 - B1F2 SINE Alu -8 141 2 7 1199 1256 144 13 31 chr12 80546862 80547091 -40710439 - URR1A DNA MER1_type 0 226 2 7 1199 275 0 0 28 chr12 80547791 80547827 -40709703 + (TTA)n Simple_repeat Simple_repeat 2 36 0 7 1199 412 233 72 27 chr12 80547827 80547966 -40709564 - B1F SINE Alu -10 139 1 7 1199 795 308 44 82 chr12 80548013 80548353 -40709177 - ORR1E LTR MaLR -2 357 31 7 1199 550 257 77 19 chr12 80548353 80548508 -40709022 + B3A SINE B2 1 164 -34 8 1199 26 50 0 0 chr12 80549759 80549799 -40707731 + AT_rich Low_complexity Low_complexity 1 40 0 8 1199 921 234 33 0 chr12 80549864 80550048 -40707482 + B3 SINE B2 4 193 -23 8 1199 805 227 54 29 chr12 80550074 80550278 -40707252 - B3 SINE B2 -5 211 3 8 1199 1258 104 11 0 chr12 80550295 80550477 -40707053 - B2_Mm2 SINE B2 -9 186 3 8 1199 432 0 0 0 chr12 80551954 80552002 -40705528 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1199 443 289 84 49 chr12 80552493 80552839 -40704691 - ORR1E LTR MaLR 0 359 2 8 1199 26 74 0 0 chr12 80552967 80553021 -40704509 + AT_rich Low_complexity Low_complexity 1 54 0 8 1199 873 222 85 0 chr12 80553459 80553648 -40703882 + B3 SINE B2 2 206 -10 8 1199 185 304 36 0 chr12 80553712 80553768 -40703762 - L2b LINE L2 -57 3318 3261 8 1199 469 278 0 9 chr12 80554941 80555057 -40702473 - PB1D10 SINE Alu 0 117 3 9 1199 249 224 164 0 chr12 80555158 80555225 -40702305 - MER20 DNA MER1_type -56 163 86 9 1199 333 0 0 0 chr12 80556152 80556189 -40701341 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1199 342 278 104 12 chr12 80557346 80557510 -40700020 + B3A SINE B2 2 180 -18 9 1199 597 94 0 0 chr12 80558014 80558099 -40699431 + (TG)n Simple_repeat Simple_repeat 2 86 0 9 1199 696 243 13 63 chr12 80558108 80558266 -40699264 - RSINE1 SINE B4 -14 151 2 9 1199 261 0 0 0 chr12 80558381 80558410 -40699120 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1199 232 293 94 13 chr12 80558777 80558936 -40698594 - L1M5 LINE L1 -737 5503 5332 9 1199 381 162 0 0 chr12 80559056 80559124 -40698406 + (TA)n Simple_repeat Simple_repeat 1 68 0 9 1199 372 22 0 0 chr12 80559130 80559175 -40698355 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1199 390 216 23 0 chr12 80559183 80559271 -40698259 - B4A SINE B4 -19 273 184 1 1199 462 324 22 0 chr12 80559283 80559419 -40698111 - B4A SINE B4 -153 139 1 1 1199 246 156 0 0 chr12 80559707 80559752 -40697778 + GA-rich Low_complexity Low_complexity 1 45 0 1 1199 203 294 120 48 chr12 80560789 80560914 -40696616 - MIR3 SINE MIR -61 147 14 1 1199 701 222 7 34 chr12 80561069 80561218 -40696312 + B1_Mur1 SINE Alu 3 147 -2 1 1199 197 222 16 0 chr12 80561231 80561294 -40696236 + GA-rich Low_complexity Low_complexity 2 65 0 1 1199 188 182 23 0 chr12 80561477 80561521 -40696009 + CT-rich Low_complexity Low_complexity 2 46 0 1 1199 429 215 0 0 chr12 80561513 80561599 -40695931 + T-rich Low_complexity Low_complexity 36 121 0 1 1199 1296 41 7 0 chr12 80561599 80561745 -40695785 - B1_Mus2 SINE Alu 0 147 1 1 1199 711 164 0 0 chr12 80561745 80561877 -40695653 + CT-rich Low_complexity Low_complexity 1 132 0 1 1199 593 27 0 13 chr12 80562251 80562327 -40695203 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1199 893 50 8 48 chr12 80562327 80562452 -40695078 - B1_Mus1 SINE Alu -28 120 1 1 1199 21 71 0 0 chr12 80562783 80562825 -40694705 + AT_rich Low_complexity Low_complexity 1 42 0 1 1199 441 0 0 0 chr12 80563357 80563406 -40694124 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1199 219 274 10 38 chr12 80563509 80563592 -40693938 - L2a LINE L2 -36 3390 3290 1 1199 268 348 22 0 chr12 80564162 80564251 -40693279 + polypurine Low_complexity Low_complexity 2 92 0 1 1199 510 242 54 15 chr12 80564812 80564942 -40692588 + B1F1 SINE Alu 15 149 0 1 1199 180 250 69 69 chr12 80565296 80565412 -40692118 - MIR SINE MIR -113 149 34 1 1199 699 286 35 86 chr12 80565999 80566229 -40691301 + B4 SINE B4 1 218 -74 1 1199 637 225 93 0 chr12 80566229 80566380 -40691150 + RSINE1 SINE B4 1 165 0 1 1199 699 286 35 86 chr12 80566380 80566405 -40691125 + B4 SINE B4 219 243 -49 1 1199 207 286 78 0 chr12 80567921 80567998 -40689532 + MIR3 SINE MIR 119 201 -7 1 1199 741 225 111 35 chr12 80568134 80568332 -40689198 + B3 SINE B2 2 214 -2 1 1199 829 286 70 51 chr12 80568342 80568544 -40688986 - Lx6 LINE L1 -26 7434 7225 1 1199 3697 35 33 9 chr12 80568544 80568970 -40688560 - RLTR10C LTR ERVK 0 436 1 1 1199 829 286 70 51 chr12 80568970 80569040 -40688490 - Lx6 LINE L1 -236 7224 7157 1 1199 661 173 5 8 chr12 80569688 80569822 -40687708 + Lx3C LINE L1 6533 6670 -311 1 1199 637 283 0 14 chr12 80569940 80570080 -40687450 - RSINE1 SINE B4 -26 139 2 1 1199 1457 252 171 56 chr12 80570607 80571017 -40686513 + L1MB7 LINE L1 4396 4874 -1272 1 1199 794 200 171 0 chr12 80571017 80571192 -40686338 - B3 SINE B2 -9 207 3 1 1199 1713 270 123 39 chr12 80571192 80572407 -40685123 + L1MB7 LINE L1 4875 6172 -12 1 1199 390 298 26 0 chr12 80572572 80572686 -40684844 - PB1D10 SINE Alu 0 117 1 1 1199 8234 71 10 3 chr12 80573636 80574666 -40682864 - Lx3_Mus LINE L1 -11 6998 5962 1 1199 4579 58 31 5 chr12 80574668 80575335 -40682195 + Lx3A LINE L1 5296 5967 -1014 1 1199 582 270 21 21 chr12 80576059 80576199 -40681331 + B1F2 SINE Alu 7 146 -3 1 1199 237 261 89 89 chr12 80576275 80576376 -40681154 + PB1D10 SINE Alu 1 101 -16 1 1199 247 258 16 0 chr12 80577552 80577614 -40679916 + (TGG)n Simple_repeat Simple_repeat 3 65 0 1 1199 24 0 0 0 chr12 80578822 80578846 -40678684 + AT_rich Low_complexity Low_complexity 1 24 0 1 1199 1800 179 51 82 chr12 80579451 80579841 -40677689 + ORR1C1 LTR MaLR 1 378 0 1 1199 202 224 67 33 chr12 80579945 80580005 -40677525 - MIRm SINE MIR 0 276 215 1 1199 360 0 0 0 chr12 80580543 80580583 -40676947 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1199 819 246 6 6 chr12 80580591 80580771 -40676759 - B3A SINE B2 -18 180 1 1 1199 560 256 140 0 chr12 80581028 80581192 -40676338 + B3 SINE B2 30 216 0 1 1199 270 0 0 0 chr12 80581206 80581236 -40676294 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 1 1199 887 92 0 8 chr12 80581238 80581370 -40676160 + (GAAAA)n Simple_repeat Simple_repeat 4 134 0 1 1199 353 250 92 0 chr12 80581531 80581607 -40675923 - RSINE1 SINE B4 -6 159 77 1 1199 22 56 0 0 chr12 80581964 80582000 -40675530 + AT_rich Low_complexity Low_complexity 1 36 0 1 1199 224 217 0 0 chr12 80583289 80583335 -40674195 + T-rich Low_complexity Low_complexity 5 50 0 1 1199 688 251 69 32 chr12 80583542 80583789 -40673741 + MARNA DNA Mariner 14 269 -317 1 1199 377 209 54 11 chr12 80583916 80584008 -40673522 - L1MC4a LINE L1 -3 7879 7784 1 1199 2434 80 58 12 chr12 80584059 80584389 -40673141 - Lx3_Mus LINE L1 -1 7008 6664 1 1199 405 0 0 0 chr12 80584479 80584524 -40673006 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1199 510 266 111 35 chr12 80584568 80584712 -40672818 + B3A SINE B2 1 155 -43 1 1199 23 0 0 0 chr12 80584784 80584807 -40672723 + AT_rich Low_complexity Low_complexity 1 23 0 1 1199 214 302 94 0 chr12 80584882 80584935 -40672595 - ID4 SINE ID -2 81 24 1 1199 24 32 0 0 chr12 80585072 80585103 -40672427 + AT_rich Low_complexity Low_complexity 1 31 0 1 1199 1188 78 0 0 chr12 80585103 80585245 -40672285 - B1_Mus1 SINE Alu -5 143 2 1 1199 1287 34 7 0 chr12 80585607 80585753 -40671777 - B1_Mus2 SINE Alu 0 147 1 1 1199 656 212 307 6 chr12 80585831 80585997 -40671533 + B3 SINE B2 1 216 0 1 1199 356 100 319 9 chr12 80586143 80586256 -40671274 - B2_Mm2 SINE B2 -1 194 47 1 1199 1112 110 30 0 chr12 80586289 80586453 -40671077 - B2_Mm1t SINE B2 -24 169 1 1 1199 437 236 103 9 chr12 80586616 80586723 -40670807 - RSINE1 SINE B4 -37 128 12 1 1199 428 255 155 112 chr12 80586780 80586967 -40670563 - B4 SINE B4 0 292 85 1 1199 884 203 26 26 chr12 80586967 80587159 -40670371 - B3A SINE B2 -6 192 1 1 1199 428 255 155 112 chr12 80587159 80587249 -40670281 - B4 SINE B4 -208 84 3 1 1199 466 262 49 8 chr12 80587273 80587396 -40670134 + ID_B1 SINE B4 84 211 -13 1 1199 199 321 36 24 chr12 80587434 80587517 -40670013 - MIR SINE MIR -14 248 165 1 1199 201 147 0 0 chr12 80589414 80589448 -40668082 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1199 266 330 49 43 chr12 80589508 80589630 -40667900 - MIRc SINE MIR -99 169 43 1 1199 286 310 99 10 chr12 80590409 80590510 -40667020 + PB1D10 SINE Alu 7 116 -1 1 1199 333 359 26 57 chr12 80591835 80592065 -40665465 + L2c LINE L2 3162 3384 -3 1 1199 186 256 47 93 chr12 80592430 80592516 -40665014 + L2b LINE L2 3289 3370 -5 1 1199 335 314 16 24 chr12 80593212 80593356 -40664174 - MIR3 SINE MIR -28 180 43 1 1199 411 21 0 0 chr12 80593890 80593938 -40663592 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1199 626 286 46 41 chr12 80593947 80594144 -40663386 + B3A SINE B2 1 198 0 1 1199 620 214 161 38 chr12 80594368 80594641 -40662889 - MLT1E3 LTR MaLR -9 671 365 1 1199 359 340 99 27 chr12 80594640 80594861 -40662669 + MamRep605 Unknown Unknown 532 768 -108 1 1199 1522 212 55 113 chr12 80595184 80595678 -40661852 - RLTR11A LTR ERVK 0 528 64 1 1199 4348 254 50 14 chr12 80596362 80597465 -40660065 + Lx8 LINE L1 6326 7468 -5 1 1199 756 213 243 0 chr12 80597497 80597666 -40659864 + B3 SINE B2 1 210 -6 1 1199 498 75 0 0 chr12 80597709 80597776 -40659754 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1199 1508 244 138 19 chr12 80597955 80598760 -40658770 - L1MD1 LINE L1 -1758 6027 5145 1 1199 24 0 0 0 chr12 80598814 80598838 -40658692 + AT_rich Low_complexity Low_complexity 1 24 0 1 1199 1324 100 5 22 chr12 80598845 80599029 -40658501 + B2_Mm2 SINE B2 1 181 -14 1 1199 579 293 29 0 chr12 80600111 80600251 -40657279 + B1F SINE Alu 1 144 -5 1 1199 527 304 56 1 chr12 80600397 80600602 -40656928 - MIR SINE MIR -28 240 21 1 1199 988 278 142 63 chr12 80600833 80601084 -40656446 - MLT1D LTR MaLR -55 450 194 1 1199 402 264 46 8 chr12 80601084 80601214 -40656316 - B1F SINE Alu -14 135 1 1 1199 988 278 142 63 chr12 80601214 80601377 -40656153 - MLT1D LTR MaLR -312 193 3 1 1199 180 298 0 0 chr12 80601378 80601425 -40656105 + MIR SINE MIR 101 147 -61 1 1199 298 259 0 41 chr12 80601481 80601626 -40655904 + ORR1B1-int LTR MaLR 616 754 -755 1 1199 1096 78 0 0 chr12 80601525 80601666 -40655864 + B1_Mus2 SINE Alu 7 147 0 1 1199 180 143 0 0 chr12 80601666 80601708 -40655822 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1199 669 25 0 0 chr12 80601727 80601806 -40655724 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 1 1199 1501 60 33 0 chr12 80601901 80602083 -40655447 - B2_Mm1t SINE B2 -5 188 1 1 1199 1100 198 19 0 chr12 80602142 80602354 -40655176 - B3 SINE B2 0 216 1 1 1199 445 244 123 80 chr12 80602652 80602839 -40654691 + MER3 DNA MER1_type 8 202 -7 1 1199 237 376 0 0 chr12 80603177 80603262 -40654268 - L2a LINE L2 0 3426 3342 1 1199 305 375 44 20 chr12 80604368 80604589 -40652941 - MIRb SINE MIR -18 250 18 1 1199 418 363 23 14 chr12 80604756 80604974 -40652556 + MER58A DNA MER1_type 5 224 0 1 1199 205 292 0 0 chr12 80605913 80605961 -40651569 + T-rich Low_complexity Low_complexity 4 51 0 1 1199 447 181 95 11 chr12 80606120 80606215 -40651315 + PB1D10 SINE Alu 14 116 -1 1 1199 254 308 115 53 chr12 80606249 80606362 -40651168 + PB1D7 SINE Alu 1 120 0 1 1199 1194 213 5 0 chr12 80606833 80607044 -40650486 + B3 SINE B2 2 213 -3 1 1199 184 284 136 0 chr12 80607068 80607149 -40650381 - MIR SINE MIR -67 195 104 1 1199 275 266 62 31 chr12 80608948 80609076 -40648454 - MER94 DNA AcHobo -1 133 2 1 1200 364 346 16 0 chr12 80609294 80609421 -40648109 + Charlie1b DNA MER1_type 3 131 -392 2 1200 470 278 51 47 chr12 80609438 80609672 -40647858 + Charlie1b DNA MER1_type 190 424 -99 2 1200 1193 244 39 36 chr12 80609972 80610252 -40647278 - B4A SINE B4 -11 281 1 2 1200 305 309 62 18 chr12 80610750 80610862 -40646668 - Tigger7 DNA MER2_type 0 2491 2375 2 1200 694 240 178 50 chr12 80611128 80611387 -40646143 - B4A SINE B4 0 292 1 2 1200 1954 153 115 11 chr12 80611444 80611801 -40645729 + MTC LTR MaLR 1 394 -27 2 1200 226 293 177 7 chr12 80614236 80614377 -40643153 + RMER21B LTR ERV1 592 756 -86 2 1200 359 286 13 19 chr12 80614422 80614544 -40642986 + MIRb SINE MIR 20 138 -70 2 1200 286 262 0 15 chr12 80615423 80615489 -40642041 + PB1 SINE Alu 2 66 -61 2 1200 216 276 17 0 chr12 80616232 80616290 -40641240 + CT-rich Low_complexity Low_complexity 4 62 0 2 1200 678 259 22 0 chr12 80616291 80616426 -40641104 - B1F2 SINE Alu -11 138 1 2 1200 247 237 20 127 chr12 80616747 80616897 -40640633 + Lx9 LINE L1 7507 7640 -4 2 1200 486 322 84 32 chr12 80617027 80617396 -40640134 - L1ME1 LINE L1 -73 6106 5719 2 1200 413 247 117 43 chr12 80617424 80617616 -40639914 - L1ME1 LINE L1 -545 5634 5428 2 1200 9136 110 16 20 chr12 80617622 80617782 -40639748 - Lx3C LINE L1 0 6976 6819 2 1200 1083 94 0 0 chr12 80617782 80617962 -40639568 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1200 9136 102 12 21 chr12 80617962 80619724 -40637806 - Lx3C LINE L1 -158 6818 5077 2 1200 5076 116 17 2 chr12 80619718 80620064 -40637466 + L1_Mur1 LINE L1 2539 2889 -2997 2 1200 717 97 0 0 chr12 80620064 80620167 -40637363 + (GA)n Simple_repeat Simple_repeat 2 104 0 2 1200 5076 116 17 2 chr12 80620167 80620623 -40636907 + L1_Mur1 LINE L1 2890 3353 -2533 2 1200 30 0 0 0 chr12 80620659 80620689 -40636841 + AT_rich Low_complexity Low_complexity 1 30 0 2 1200 572 91 0 11 chr12 80620767 80620856 -40636674 + (GAAA)n Simple_repeat Simple_repeat 4 91 0 2 1200 228 280 48 8 chr12 80620886 80621012 -40636518 - L1MEc LINE L1 -840 5479 5349 2 1200 708 237 0 19 chr12 80621026 80621181 -40636349 - B3A SINE B2 -45 153 2 2 1200 272 290 43 0 chr12 80621182 80621275 -40636255 - L1MEc LINE L1 -979 5340 5244 2 1200 916 245 107 8 chr12 80621299 80621562 -40635968 - MTE2a LTR MaLR 0 379 91 2 1200 246 255 135 9 chr12 80621599 80621710 -40635820 - L1MEc LINE L1 -4457 1943 1819 2 1200 188 163 23 0 chr12 80621753 80621796 -40635734 + CT-rich Low_complexity Low_complexity 3 46 0 2 1200 412 267 37 22 chr12 80621858 80621876 -40635654 - ID_B1 SINE B4 -2 222 87 2 1200 420 278 26 9 chr12 80621876 80621992 -40635538 - B1F1 SINE Alu -26 123 6 2 1200 278 267 196 43 chr12 80622081 80622316 -40635214 - Lx8 LINE L1 -2 7471 7201 2 1200 412 262 119 1 chr12 80622505 80622522 -40635008 + B1F SINE Alu 2 75 -74 2 1200 500 265 0 0 chr12 80622522 80622624 -40634906 + ID_B1 SINE B4 99 200 -24 2 1200 412 262 119 1 chr12 80622624 80622638 -40634892 + B1F SINE Alu 76 147 -2 2 1200 910 118 79 24 chr12 80622650 80622815 -40634715 - B2_Mm2 SINE B2 -8 187 14 2 1200 219 69 0 0 chr12 80624090 80624119 -40633411 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1200 231 88 0 0 chr12 80627248 80627282 -40630248 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1200 273 401 23 26 chr12 80627436 80627637 -40629893 - MIR3 SINE MIR -6 202 2 2 1200 351 265 0 12 chr12 80627716 80627800 -40629730 - MER96B DNA hAT -187 230 148 2 1200 252 0 0 0 chr12 80628016 80628044 -40629486 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1200 439 291 44 7 chr12 80628568 80628703 -40628827 + B1F SINE Alu 1 140 -9 2 1200 1258 255 34 67 chr12 80628748 80629135 -40628395 + MTE2a LTR MaLR 1 374 -5 2 1200 618 279 39 14 chr12 80629420 80629627 -40627903 + MER20 DNA MER1_type 4 215 -4 2 1200 290 283 58 107 chr12 80629914 80630017 -40627513 + B1F SINE Alu 1 98 -51 2 1200 2526 164 73 27 chr12 80630331 80630960 -40626570 + RMER6A LTR ERVK 1 755 -1 2 1200 23 33 0 0 chr12 80631936 80631966 -40625564 + AT_rich Low_complexity Low_complexity 1 30 0 2 1200 1991 144 31 42 chr12 80631966 80632320 -40625210 - Lx4A LINE L1 0 7058 6709 2 1200 228 306 139 0 chr12 80632443 80632515 -40625015 - MIR SINE MIR -102 106 25 2 1200 234 0 0 0 chr12 80634832 80634858 -40622672 + (TAA)n Simple_repeat Simple_repeat 1 26 0 2 1200 327 177 0 0 chr12 80634855 80634917 -40622613 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1200 286 42 20 20 chr12 80636445 80636494 -40621036 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1200 263 93 23 0 chr12 80636985 80637028 -40620502 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2 1200 1430 76 48 16 chr12 80637582 80637770 -40619760 - B2_Mm2 SINE B2 -1 194 1 2 1200 2643 263 115 12 chr12 80638314 80639200 -40618330 - Lx8 LINE L1 -2 7471 6495 2 1200 180 291 7 146 chr12 80639565 80639702 -40617828 + L2a LINE L2 3294 3411 -15 2 1200 807 200 43 11 chr12 80639904 80640106 -40617424 + L1MB8 LINE L1 5679 5905 -1977 2 1200 432 37 0 0 chr12 80640197 80640251 -40617279 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1200 441 200 49 16 chr12 80640390 80640512 -40617018 + L1MB8 LINE L1 6044 6169 -9 2 1200 767 222 107 15 chr12 80640652 80640687 -40616843 - B3 SINE B2 0 216 167 2 1200 411 21 0 0 chr12 80640687 80640735 -40616795 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1200 767 222 107 15 chr12 80640735 80640896 -40616634 - B3 SINE B2 -50 166 3 2 1200 1211 61 9 9 chr12 80641772 80641988 -40615542 + (TTCC)n Simple_repeat Simple_repeat 1 216 0 2 1200 379 259 99 27 chr12 80642938 80643049 -40614481 - B1F SINE Alu -7 142 24 2 1200 460 202 8 76 chr12 80644459 80644577 -40612953 + L2a LINE L2 3065 3174 -252 2 1200 190 307 91 0 chr12 80645556 80645644 -40611886 + MIRc SINE MIR 49 144 -124 2 1200 559 189 126 22 chr12 80647474 80647609 -40609921 + B1F SINE Alu 1 149 0 2 1200 213 39 0 0 chr12 80649092 80649118 -40608412 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1200 836 145 13 52 chr12 80649684 80649837 -40607693 - B1_Mur2 SINE Alu 0 149 3 2 1200 1458 177 179 38 chr12 80649936 80650277 -40607253 - MTD LTR MaLR -30 389 1 2 1200 195 400 90 0 chr12 80651457 80651557 -40605973 - MIR SINE MIR -69 139 31 2 1200 204 125 0 0 chr12 80652121 80652153 -40605377 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1200 216 0 0 0 chr12 80652222 80652246 -40605284 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1200 326 253 43 11 chr12 80652714 80652806 -40604724 + CT-rich Low_complexity Low_complexity 3 97 0 2 1200 470 337 88 23 chr12 80653101 80653513 -40604017 - MLT1J1 LTR MaLR -3 445 3 2 1200 971 227 70 15 chr12 80653631 80653832 -40603698 + B3 SINE B2 3 214 -2 2 1200 444 91 0 0 chr12 80655911 80655977 -40601553 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1200 630 0 0 0 chr12 80657610 80657680 -40599850 + (TTCTC)n Simple_repeat Simple_repeat 5 74 0 2 1200 260 154 0 19 chr12 80657680 80657733 -40599797 + CT-rich Low_complexity Low_complexity 3 54 0 2 1200 1996 132 31 85 chr12 80657733 80658122 -40599408 - L1_Mus3 LINE L1 0 6638 6271 2 1200 198 103 0 0 chr12 80659701 80659730 -40597800 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 1200 855 193 0 0 chr12 80659734 80659884 -40597646 - B1_Mur4 SINE Alu 0 150 1 2 1200 195 284 187 38 chr12 80659920 80660077 -40597453 + L2b LINE L2 2963 3119 -307 2 1200 525 32 0 0 chr12 80661909 80661972 -40595558 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1200 576 0 0 0 chr12 80662406 80662470 -40595060 + (TTTC)n Simple_repeat Simple_repeat 4 67 0 2 1200 2504 42 3 0 chr12 80662554 80662841 -40594689 - L1_Mus1 LINE L1 0 6567 6280 2 1200 2270 108 12 12 chr12 80662841 80663178 -40594352 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1200 43708 21 4 3 chr12 80663180 80669627 -40587903 - IAPEz-int LTR ERVK -2 6479 8 2 1200 2135 108 12 12 chr12 80669627 80669964 -40587566 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1200 5885 37 10 0 chr12 80669964 80670661 -40586869 - L1_Mus1 LINE L1 -12 6555 5852 2 1200 30 45 0 0 chr12 80670684 80670728 -40586802 + AT_rich Low_complexity Low_complexity 1 44 0 2 1200 6693 133 163 159 chr12 80671064 80672036 -40585494 + L1_Mur3 LINE L1 1897 2949 -2931 2 1200 916 123 65 0 chr12 80672036 80672191 -40585339 + B2_Mm2 SINE B2 1 165 -30 2 1200 6693 133 163 159 chr12 80672191 80673151 -40584379 + L1_Mur3 LINE L1 2950 3991 -1889 2 1200 1105 143 54 5 chr12 80673160 80673364 -40584166 - MTC LTR MaLR -203 218 5 2 1200 2191 206 29 29 chr12 80673369 80673853 -40583677 - Lx6 LINE L1 -1390 6070 5587 2 1200 3006 224 67 77 chr12 80673867 80674371 -40583159 + Lx6 LINE L1 6656 7149 -311 2 1200 1154 61 0 7 chr12 80674371 80674519 -40583011 - B1_Mus2 SINE Alu 0 147 1 2 1200 3006 224 67 77 chr12 80674519 80674817 -40582713 + Lx6 LINE L1 7150 7450 -10 2 1200 763 339 178 14 chr12 80674863 80675515 -40582015 - L3 LINE CR1 -54 4435 3677 2 1200 243 88 0 0 chr12 80676002 80676036 -40581494 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1200 497 16 16 0 chr12 80677145 80677207 -40580323 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1200 233 296 105 16 chr12 80677343 80677503 -40580027 - L1MC4 LINE L1 -553 7489 7310 2 1200 309 169 0 0 chr12 80677675 80677734 -40579796 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 2 1200 1696 31 0 0 chr12 80677744 80677936 -40579594 - B2_Mm1a SINE B2 0 193 2 2 1200 815 183 6 0 chr12 80677997 80678172 -40579358 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 2 1200 545 278 123 31 chr12 80678279 80678572 -40578958 - L1MC4 LINE L1 -1118 6924 6561 2 1200 329 268 96 78 chr12 80678901 80679067 -40578463 + B4A SINE B4 4 172 -120 2 1200 613 165 91 0 chr12 80679125 80679246 -40578284 + B1_Mur1 SINE Alu 18 149 0 2 1200 246 296 36 24 chr12 80679264 80679347 -40578183 + RSINE1 SINE B4 82 165 0 2 1200 460 198 11 11 chr12 80679387 80679474 -40578056 + B1F SINE Alu 33 119 -30 2 1200 309 229 100 40 chr12 80679474 80679487 -40578043 + ID_B1 SINE B4 114 219 -5 2 1200 410 215 10 41 chr12 80679565 80679662 -40577868 + B1_Mm SINE Alu 9 102 -45 2 1200 222 62 0 0 chr12 80679675 80679707 -40577823 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1200 245 390 18 44 chr12 80680205 80680433 -40577097 + AmnSINE1 SINE SINE 35 256 -319 2 1200 236 310 74 47 chr12 80682086 80682235 -40575295 + MamRep605 Unknown Unknown 498 650 -226 3 1200 224 265 142 25 chr12 80682444 80682564 -40574966 + MIR SINE MIR 95 228 -34 3 1200 2867 73 44 8 chr12 80682758 80683144 -40574386 - MTB LTR MaLR 0 400 1 3 1200 192 374 0 32 chr12 80683744 80683838 -40573692 - MIRb SINE MIR -24 244 154 3 1200 1190 55 0 0 chr12 80683965 80684110 -40573420 + B1_Mm SINE Alu 1 145 -2 3 1200 486 0 0 0 chr12 80684110 80684164 -40573366 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1200 218 250 0 0 chr12 80684295 80684339 -40573191 + G-rich Low_complexity Low_complexity 2 45 0 3 1200 3362 45 7 0 chr12 80684830 80685234 -40572296 + L1_Mus1 LINE L1 6159 6565 -2 3 1200 23 0 0 0 chr12 80685297 80685320 -40572210 + AT_rich Low_complexity Low_complexity 1 23 0 3 1200 229 279 64 108 chr12 80686117 80686274 -40571256 - MIRc SINE MIR -5 263 114 3 1200 212 366 73 18 chr12 80686328 80686492 -40571038 - MIR SINE MIR -72 190 18 3 1200 219 296 0 14 chr12 80687393 80687465 -40570065 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1200 1552 128 125 0 chr12 80688633 80688930 -40568600 + RLTR15 LTR ERVK 26 359 0 3 1200 280 247 119 36 chr12 80689006 80689090 -40568440 - B1F SINE Alu -58 91 1 3 1200 672 266 95 11 chr12 80689808 80689998 -40567532 - B3 SINE B2 0 216 11 3 1200 277 250 48 36 chr12 80689924 80690007 -40567523 - RSINE1 SINE B4 -79 86 3 3 1200 268 341 94 20 chr12 80690069 80690323 -40567207 - L3b LINE CR1 -188 294 22 3 1200 771 312 82 3 chr12 80690454 80690830 -40566700 - L1MB7 LINE L1 -16 6168 5763 3 1200 420 20 0 0 chr12 80690907 80690956 -40566574 + (GTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1200 1153 75 0 0 chr12 80690956 80691095 -40566435 - B1_Mus1 SINE Alu -8 140 2 3 1200 21 0 0 0 chr12 80691104 80691125 -40566405 + AT_rich Low_complexity Low_complexity 1 21 0 3 1200 1142 76 0 0 chr12 80691165 80691309 -40566221 - B1_Mm SINE Alu -2 145 2 3 1200 570 273 180 0 chr12 80692064 80692247 -40565283 + B3 SINE B2 1 216 0 3 1200 555 16 0 0 chr12 80692759 80692823 -40564707 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1200 438 20 0 0 chr12 80693715 80693766 -40563764 + (CTCA)n Simple_repeat Simple_repeat 1 51 0 3 1200 4778 20 31 2 chr12 80694204 80694752 -40562778 + L1Md_F2 LINE L1 6019 6582 0 3 1200 749 256 6 48 chr12 80695092 80695260 -40562270 - RSINE1 SINE B4 -2 163 3 3 1200 397 241 27 47 chr12 80695584 80695732 -40561798 + L3b LINE CR1 7 151 -331 3 1200 1241 42 39 0 chr12 80695863 80696149 -40561381 + (TCCA)n Simple_repeat Simple_repeat 1 297 0 3 1200 276 270 32 112 chr12 80696172 80696297 -40561233 + PB1D10 SINE Alu 3 117 0 3 1200 327 154 0 0 chr12 80696358 80696423 -40561107 + (ATG)n Simple_repeat Simple_repeat 1 65 0 3 1200 1359 77 11 0 chr12 80696525 80696706 -40560824 - B2_Mm1t SINE B2 -10 183 1 3 1200 455 230 153 87 chr12 80696817 80697046 -40560484 - MIRb SINE MIR 0 268 25 3 1200 1397 23 12 0 chr12 80700894 80701066 -40556464 + (GGGAA)n Simple_repeat Simple_repeat 2 175 0 3 1200 21 0 0 0 chr12 80702092 80702113 -40555417 + AT_rich Low_complexity Low_complexity 1 21 0 3 1200 1181 86 0 0 chr12 80704237 80704399 -40553131 - B2_Mm2 SINE B2 -31 164 3 3 1200 982 265 45 32 chr12 80704522 80704830 -40552700 - L1M4 LINE L1 -438 5746 5435 3 1200 730 256 43 16 chr12 80706080 80706283 -40551247 + ID_B1 SINE B4 2 208 -16 3 1200 354 377 19 19 chr12 80706876 80707033 -40550497 - RSINE1 SINE B4 -7 158 2 3 1200 22 0 0 0 chr12 80707045 80707067 -40550463 + AT_rich Low_complexity Low_complexity 1 22 0 3 1200 543 214 56 0 chr12 80707084 80707210 -40550320 - RSINE1 SINE B4 -29 136 4 3 1200 194 286 18 0 chr12 80708222 80708278 -40549252 - MIRm SINE MIR -8 268 212 3 1200 311 301 75 38 chr12 80708299 80708458 -40549072 - MIRb SINE MIR -15 253 89 3 1200 333 292 34 0 chr12 80708633 80708738 -40548792 - B1F1 SINE Alu -8 141 34 3 1200 950 119 14 14 chr12 80712983 80713128 -40544402 + B1_Mus1 SINE Alu 2 146 -2 3 1200 272 343 58 14 chr12 80713266 80713473 -40544057 - MIRc SINE MIR -43 225 10 3 1200 21 0 0 0 chr12 80714901 80714922 -40542608 + AT_rich Low_complexity Low_complexity 1 21 0 3 1200 828 80 0 0 chr12 80716143 80716256 -40541274 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 3 1200 841 24 85 0 chr12 80716260 80716425 -40541105 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 3 1200 655 12 12 12 chr12 80716426 80716511 -40541019 + (GAGAA)n Simple_repeat Simple_repeat 1 85 0 3 1200 459 0 0 0 chr12 80717402 80717453 -40540077 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1200 333 0 0 0 chr12 80718106 80718143 -40539387 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1200 870 181 28 0 chr12 80718196 80718340 -40539190 - B1_Mur1 SINE Alu -1 148 1 3 1200 789 151 0 0 chr12 80718530 80718656 -40538874 + B1_Mus2 SINE Alu 1 126 -21 3 1200 669 123 235 45 chr12 80718661 80718762 -40538768 - Lx9 LINE L1 -6 7638 7527 3 1200 212 59 0 29 chr12 80718762 80718797 -40538733 + (TTG)n Simple_repeat Simple_repeat 3 36 0 3 1200 669 123 235 45 chr12 80718797 80718874 -40538656 - Lx9 LINE L1 -118 7526 7427 3 1200 243 0 0 0 chr12 80719570 80719597 -40537933 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1200 1197 68 0 0 chr12 80719603 80719750 -40537780 - B1_Mus1 SINE Alu 0 148 2 3 1200 242 29 0 28 chr12 80719750 80719786 -40537744 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 3 1200 302 246 26 52 chr12 80720609 80720726 -40536804 + B1F SINE Alu 15 149 0 3 1200 246 258 21 43 chr12 80720634 80720727 -40536803 + ID_B1 SINE B4 133 223 -1 3 1200 293 275 89 45 chr12 80720711 80720890 -40536640 + Charlie4a DNA MER1_type 20 206 -302 3 1200 21 36 0 0 chr12 80720927 80720955 -40536575 + AT_rich Low_complexity Low_complexity 1 28 0 3 1200 232 250 0 18 chr12 80721093 80721150 -40536380 + CT-rich Low_complexity Low_complexity 1 56 0 3 1200 192 243 92 122 chr12 80723364 80723528 -40534002 + L2a LINE L2 3013 3171 -255 3 1200 315 294 0 34 chr12 80723807 80723895 -40533635 + LTR48 LTR ERV1 1 85 -702 3 1200 692 182 15 8 chr12 80723895 80724028 -40533502 + B1_Mur1 SINE Alu 14 147 -2 3 1200 531 167 40 0 chr12 80724034 80724160 -40533370 + GA-rich Low_complexity Low_complexity 3 133 0 3 1200 763 81 8 16 chr12 80726129 80726255 -40531275 + (GGAGA)n Simple_repeat Simple_repeat 2 126 0 3 1200 263 279 58 0 chr12 80726265 80726351 -40531179 - PB1D7 SINE Alu -12 108 18 3 1200 378 229 0 0 chr12 80726397 80726493 -40531037 + T-rich Low_complexity Low_complexity 1 96 0 3 1200 281 262 138 0 chr12 80727305 80727385 -40530145 - MamRep137 DNA TcMar? -346 98 8 3 1200 495 0 0 0 chr12 80728232 80728287 -40529243 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1200 207 0 0 0 chr12 80728287 80728310 -40529220 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1200 496 255 255 0 chr12 80728625 80728786 -40528744 + B3 SINE B2 1 202 -14 3 1200 26 50 0 0 chr12 80728858 80728898 -40528632 + AT_rich Low_complexity Low_complexity 1 40 0 3 1200 1154 68 0 0 chr12 80732016 80732164 -40525366 + B1_Mus1 SINE Alu 1 148 0 3 1200 237 43 0 60 chr12 80732726 80732776 -40524754 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1200 1171 82 0 0 chr12 80732784 80732931 -40524599 - B1_Mus2 SINE Alu 0 147 1 3 1200 618 14 0 0 chr12 80734236 80734307 -40523223 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 3 1200 735 12 0 0 chr12 80734307 80734390 -40523140 + (GAGAA)n Simple_repeat Simple_repeat 2 85 0 3 1200 324 0 0 0 chr12 80734890 80734926 -40522604 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1200 181 279 16 0 chr12 80735419 80735480 -40522050 + L2 LINE L2 2803 2864 -555 3 1200 247 290 14 0 chr12 80736618 80736687 -40520843 + MIRc SINE MIR 82 151 -117 3 1200 1344 146 0 19 chr12 80737443 80737653 -40519877 - B3 SINE B2 -9 207 2 3 1200 240 35 0 0 chr12 80737745 80737774 -40519756 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 3 1200 1067 202 34 5 chr12 80737830 80738039 -40519491 + ID_B1 SINE B4 2 216 -8 3 1200 582 15 0 0 chr12 80738045 80738112 -40519418 + (TGG)n Simple_repeat Simple_repeat 2 68 0 3 1201 391 160 42 0 chr12 80740460 80740556 -40516974 - PB1D9 SINE Alu 0 147 42 3 1201 1009 171 0 19 chr12 80740556 80740772 -40516758 + (TCTCTG)n Simple_repeat Simple_repeat 1 211 0 3 1201 1098 150 0 22 chr12 80740794 80740978 -40516552 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 3 1201 303 217 0 32 chr12 80740986 80741048 -40516482 - B1_Mus1 SINE Alu -88 60 1 3 1201 1750 16 0 0 chr12 80741709 80741901 -40515629 - B2_Mm1a SINE B2 0 193 2 3 1201 204 97 0 0 chr12 80741961 80741992 -40515538 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1201 849 271 20 35 chr12 80742002 80742257 -40515273 - B4 SINE B4 -23 269 2 3 1201 186 291 18 0 chr12 80742271 80742326 -40515204 + MIR SINE MIR 124 179 -83 3 1201 235 312 25 0 chr12 80742347 80742427 -40515103 - ID4_ SINE ID -1 82 1 3 1201 293 273 0 0 chr12 80744137 80744203 -40513327 - B4A SINE B4 -10 282 217 3 1201 3417 228 49 48 chr12 80744212 80745154 -40512376 - Lx9 LINE L1 -15 7629 6687 3 1201 427 233 203 6 chr12 80745168 80745330 -40512200 - B4A SINE B4 -94 198 5 3 1201 265 361 103 0 chr12 80746125 80746280 -40511250 - MIRb SINE MIR -1 267 97 3 1201 853 36 0 0 chr12 80746326 80746438 -40511092 + B1_Mus1 SINE Alu 35 146 -2 3 1201 564 56 0 0 chr12 80746438 80746510 -40511020 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 1201 181 311 65 22 chr12 80749112 80749204 -40508326 - MIR SINE MIR -139 123 28 3 1201 315 49 0 0 chr12 80749421 80749462 -40508068 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1201 360 0 0 0 chr12 80749715 80749755 -40507775 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1201 492 62 0 0 chr12 80749765 80749829 -40507701 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1201 3699 270 78 26 chr12 80751073 80751126 -40506404 + Lx8 LINE L1 6127 6199 -1274 4 1201 615 14 0 0 chr12 80751126 80751198 -40506332 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1201 3699 270 78 26 chr12 80751198 80752355 -40505175 + Lx8 LINE L1 6200 7400 -73 4 1201 231 360 1 0 chr12 80754732 80754810 -40502720 - MIRb SINE MIR -164 104 23 4 1201 248 172 17 0 chr12 80755571 80755629 -40501901 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1201 314 211 69 14 chr12 80755902 80755974 -40501556 + B1_Mur2 SINE Alu 73 148 -1 4 1201 611 246 120 5 chr12 80756247 80756431 -40501099 - B3 SINE B2 -3 213 9 4 1201 4531 48 32 2 chr12 80756453 80757016 -40500514 - L1_Mus1 LINE L1 0 6567 5988 4 1201 418 287 149 0 chr12 80757211 80757385 -40500145 - MIRb SINE MIR -14 254 55 4 1201 326 221 15 0 chr12 80757834 80757902 -40499628 + ID4 SINE ID 12 80 -3 4 1201 551 190 115 14 chr12 80760480 80760500 -40497030 + B4 SINE B4 65 217 -75 4 1201 882 8 84 0 chr12 80760500 80760619 -40496911 + B1_Mus2 SINE Alu 10 138 -9 4 1201 197 33 33 0 chr12 80760619 80760649 -40496881 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1201 254 315 0 52 chr12 80760677 80760754 -40496776 - ID4_ SINE ID 0 83 11 4 1201 416 208 11 70 chr12 80760941 80761127 -40496403 + (CATA)n Simple_repeat Simple_repeat 3 177 0 4 1201 217 204 37 22 chr12 80761136 80761271 -40496259 + (CATATA)n Simple_repeat Simple_repeat 4 140 0 4 1201 188 219 39 15 chr12 80761263 80761393 -40496137 + (CA)n Simple_repeat Simple_repeat 1 133 0 4 1201 207 0 0 0 chr12 80761629 80761652 -40495878 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1201 253 308 27 16 chr12 80761965 80762091 -40495439 + MIR3 SINE MIR 69 189 -19 4 1201 221 242 15 46 chr12 80763249 80763314 -40494216 - MIR3 SINE MIR -17 191 129 4 1201 23 0 0 0 chr12 80765586 80765609 -40491921 + AT_rich Low_complexity Low_complexity 1 23 0 4 1201 514 295 33 27 chr12 80765626 80765776 -40491754 - RSINE1 SINE B4 0 165 15 4 1201 414 211 30 40 chr12 80765786 80765885 -40491645 - PB1D10 SINE Alu -1 116 19 4 1201 329 344 38 38 chr12 80766459 80766616 -40490914 - MER5A DNA MER1_type -32 157 1 4 1201 199 312 24 48 chr12 80766821 80766905 -40490625 - MIRb SINE MIR -66 202 121 4 1201 267 31 0 0 chr12 80767484 80767516 -40490014 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 4 1201 372 59 0 0 chr12 80767958 80768009 -40489521 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1201 473 207 45 9 chr12 80768206 80768318 -40489212 + PB1D10 SINE Alu 1 116 -1 4 1201 199 302 170 0 chr12 80768633 80768739 -40488791 + L2a LINE L2 3301 3424 -2 4 1201 483 33 0 0 chr12 80769353 80769414 -40488116 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1201 400 264 32 32 chr12 80769771 80769896 -40487634 + ID_B1 SINE B4 82 206 -18 4 1201 1508 278 91 40 chr12 80770218 80770723 -40486807 - Lx8 LINE L1 0 7473 6943 4 1201 8132 47 17 2 chr12 80770726 80771825 -40485705 + ORR1A1-int LTR MaLR 677 1792 0 4 1201 2263 48 0 0 chr12 80771825 80772116 -40485414 + ORR1A1 LTR MaLR 1 291 -55 4 1201 820 270 5 23 chr12 80772150 80772366 -40485164 - Lx8 LINE L1 -560 6913 6702 4 1201 601 159 92 70 chr12 80772366 80772508 -40485022 + MTC LTR MaLR 35 179 -242 4 1201 1753 149 6 40 chr12 80772520 80772848 -40484682 + MTC LTR MaLR 105 421 0 4 1201 1512 248 71 47 chr12 80772848 80773313 -40484217 - Lx8 LINE L1 -772 6701 6226 4 1201 203 146 24 0 chr12 80773817 80773858 -40483672 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 4 1201 494 301 28 7 chr12 80773865 80774009 -40483521 - RSINE1 SINE B4 -15 150 4 4 1201 483 238 86 16 chr12 80774386 80774514 -40483016 + RSINE1 SINE B4 16 152 -13 4 1201 306 0 0 0 chr12 80774882 80774916 -40482614 + (CAAT)n Simple_repeat Simple_repeat 1 34 0 4 1201 260 0 57 0 chr12 80777298 80777333 -40480197 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 4 1201 204 214 0 0 chr12 80778361 80778403 -40479127 + (CAT)n Simple_repeat Simple_repeat 2 43 0 4 1201 423 0 0 0 chr12 80778429 80778476 -40479054 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 4 1201 1368 67 0 0 chr12 80778476 80778656 -40478874 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 1201 435 83 0 0 chr12 80778656 80778716 -40478814 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 4 1201 1329 73 0 0 chr12 80778716 80778894 -40478636 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 1201 852 104 0 0 chr12 80778896 80779021 -40478509 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 4 1201 622 216 246 11 chr12 80779130 80779305 -40478225 - B3 SINE B2 0 216 1 4 1201 405 278 37 15 chr12 80779325 80779460 -40478070 - B1F SINE Alu -7 142 5 4 1201 453 262 15 60 chr12 80779519 80779653 -40477877 - RSINE1 SINE B4 -36 129 2 4 1201 282 95 0 0 chr12 80781034 80781076 -40476454 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1201 309 290 129 14 chr12 80781080 80781220 -40476310 - RSINE1 SINE B4 -8 157 2 4 1201 373 257 116 14 chr12 80782169 80782307 -40475223 + U1 snRNA snRNA 11 162 -3 4 1201 371 173 12 0 chr12 80782313 80782394 -40475136 + GA-rich Low_complexity Low_complexity 1 82 0 4 1201 387 60 0 0 chr12 80782621 80782671 -40474859 + (CCCCCA)n Simple_repeat Simple_repeat 3 52 0 4 1201 353 184 116 58 chr12 80784734 80784855 -40472675 - L1MB8 LINE L1 0 6178 6051 4 1201 728 274 24 38 chr12 80785406 80785615 -40471915 + B3 SINE B2 9 214 -2 4 1201 25 0 0 0 chr12 80785617 80785642 -40471888 + AT_rich Low_complexity Low_complexity 1 25 0 4 1201 27 0 0 0 chr12 80786468 80786495 -40471035 + AT_rich Low_complexity Low_complexity 1 27 0 4 1201 273 228 41 58 chr12 80786714 80786835 -40470695 + MER53 DNA hAT 11 129 -64 4 1201 180 0 0 0 chr12 80786835 80786855 -40470675 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1201 669 218 35 0 chr12 80786899 80787041 -40470489 - ID_B1 SINE B4 0 224 78 4 1201 192 282 171 39 chr12 80787484 80787665 -40469865 - MIRb SINE MIR 0 268 64 4 1201 2017 145 50 6 chr12 80788000 80788360 -40469170 + ORR1C1 LTR MaLR 1 376 -2 4 1201 673 70 10 10 chr12 80789586 80789687 -40467843 + (GGA)n Simple_repeat Simple_repeat 3 103 0 4 1201 362 234 8 101 chr12 80790928 80790945 -40466585 + MT2B LTR ERVL 150 155 -446 4 1201 902 117 14 0 chr12 80790945 80791090 -40466440 + B1_Mus1 SINE Alu 1 147 -1 4 1201 185 346 0 0 chr12 80792218 80792270 -40465260 + L2b LINE L2 3289 3340 -35 4 1201 318 250 0 43 chr12 80793270 80793362 -40464168 + Charlie24 DNA MER1_type 2363 2450 0 4 1201 22 35 0 0 chr12 80793775 80793804 -40463726 + AT_rich Low_complexity Low_complexity 1 29 0 4 1201 23 54 0 0 chr12 80794900 80794937 -40462593 + AT_rich Low_complexity Low_complexity 1 37 0 4 1201 735 178 7 7 chr12 80794948 80795095 -40462435 - URR1B DNA MER1_type -10 215 69 4 1201 247 388 142 0 chr12 80795998 80796181 -40461349 + MLT1K LTR MaLR 205 413 -182 4 1201 349 332 98 114 chr12 80796399 80796715 -40460815 - ORR1E LTR MaLR -5 354 44 4 1201 256 156 0 59 chr12 80796725 80796793 -40460737 + T-rich Low_complexity Low_complexity 2 65 0 4 1201 257 0 0 29 chr12 80796807 80796841 -40460689 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 4 1201 1320 223 52 9 chr12 80797036 80797366 -40460164 - MER2 DNA MER2_type -1 344 1 4 1201 25 0 0 0 chr12 80797420 80797445 -40460085 + AT_rich Low_complexity Low_complexity 1 25 0 4 1201 29 0 0 0 chr12 80797600 80797629 -40459901 + AT_rich Low_complexity Low_complexity 1 29 0 4 1201 609 241 33 66 chr12 80800594 80800745 -40456785 + RSINE1 SINE B4 2 147 -18 4 1201 228 67 0 0 chr12 80800754 80800784 -40456746 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1201 411 211 20 40 chr12 80801227 80801326 -40456204 - PB1D7 SINE Alu 0 120 24 4 1201 1035 248 192 6 chr12 80801517 80801830 -40455700 + MTE2b LTR MaLR 1 371 -8 4 1201 198 0 0 0 chr12 80802017 80802039 -40455491 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1201 191 36 36 0 chr12 80802582 80802610 -40454920 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 4 1201 541 206 35 119 chr12 80802610 80802753 -40454777 - ID_B1 SINE B4 -12 212 82 4 1201 501 84 0 0 chr12 80803186 80803257 -40454273 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1201 477 50 0 0 chr12 80803381 80803441 -40454089 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1201 1785 130 51 3 chr12 80803491 80803827 -40453703 + MTC LTR MaLR 1 413 -8 4 1201 618 275 71 11 chr12 80805102 80805286 -40452244 - B4A SINE B4 -97 195 1 4 1201 344 307 117 22 chr12 80805376 80805599 -40451931 - L1MA7 LINE L1 -234 6057 5814 4 1201 414 0 0 0 chr12 80806084 80806130 -40451400 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1201 724 273 101 20 chr12 80807889 80808187 -40449343 - MER58B DNA MER1_type -1 340 16 4 1201 230 308 15 0 chr12 80810028 80810093 -40447437 - L2b LINE L2 -74 3301 3236 4 1201 246 267 0 0 chr12 80810549 80810609 -40446921 + ID4 SINE ID 2 61 -22 4 1201 423 0 0 0 chr12 80810907 80810954 -40446576 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1201 398 20 0 19 chr12 80811002 80811054 -40446476 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1201 1388 61 6 11 chr12 80811375 80811558 -40445972 - B2_Mm1a SINE B2 -11 182 1 4 1201 855 111 13 0 chr12 80811643 80811796 -40445734 + RLTR28 LTR ERVL 360 514 -10 5 1201 1026 207 54 12 chr12 80811807 80812039 -40445491 - Lx5 LINE L1 -574 6886 6498 5 1201 963 229 50 108 chr12 80812061 80812439 -40445091 - ORR1E LTR MaLR -2 357 2 5 1201 1988 268 110 80 chr12 80812439 80813345 -40444185 - MTE-int LTR MaLR -52 1528 595 5 1201 348 24 0 0 chr12 80813360 80813401 -40444129 + (TCC)n Simple_repeat Simple_repeat 1 41 0 5 1201 744 265 5 51 chr12 80813549 80813764 -40443766 - B4 SINE B4 -62 230 26 5 1201 750 317 158 16 chr12 80813785 80814266 -40443264 - MTE-int LTR MaLR -990 590 42 5 1201 416 271 2 154 chr12 80814325 80814515 -40443015 - MTEa LTR MaLR -16 363 202 5 1201 201 240 0 20 chr12 80814516 80814567 -40442963 + GA-rich Low_complexity Low_complexity 3 52 0 5 1201 227 258 180 0 chr12 80814575 80814664 -40442866 - MTEa LTR MaLR -187 172 68 5 1201 29 78 0 0 chr12 80815255 80815319 -40442211 + AT_rich Low_complexity Low_complexity 1 64 0 5 1201 588 29 0 0 chr12 80817884 80817954 -40439576 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1201 342 0 0 0 chr12 80817954 80817991 -40439539 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1201 186 286 114 0 chr12 80818356 80818426 -40439104 - MIR SINE MIR -1 261 184 5 1201 25 0 0 0 chr12 80819151 80819176 -40438354 + AT_rich Low_complexity Low_complexity 1 25 0 5 1201 1661 21 0 15 chr12 80819828 80820024 -40437506 + B2_Mm1a SINE B2 1 193 0 5 1201 213 39 0 0 chr12 80820024 80820050 -40437480 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1201 3017 59 200 9 chr12 80821228 80821658 -40435872 - RLTR1B LTR ERV1 0 512 1 5 1201 25 31 0 0 chr12 80822342 80822374 -40435156 + AT_rich Low_complexity Low_complexity 1 32 0 5 1201 666 195 49 0 chr12 80822402 80822525 -40435005 - B3 SINE B2 -87 129 1 5 1201 309 82 0 0 chr12 80822685 80822734 -40434796 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1201 23 0 0 0 chr12 80823815 80823838 -40433692 + AT_rich Low_complexity Low_complexity 1 23 0 5 1201 382 64 324 36 chr12 80824287 80824398 -40433132 - B2_Mm2 SINE B2 -6 189 47 5 1201 1286 102 11 0 chr12 80824464 80824640 -40432890 - B2_Mm1t SINE B2 -14 179 2 5 1201 1636 186 186 87 chr12 80824814 80825298 -40432232 - MT2A LTR ERVL 0 533 2 5 1201 312 120 0 0 chr12 80825384 80825434 -40432096 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 5 1201 23 33 0 0 chr12 80826283 80826313 -40431217 + AT_rich Low_complexity Low_complexity 1 30 0 5 1201 1156 44 0 0 chr12 80826422 80826559 -40430971 - B1_Mus1 SINE Alu -10 138 2 5 1201 684 67 0 0 chr12 80827022 80827112 -40430418 + (TCC)n Simple_repeat Simple_repeat 2 91 0 5 1201 384 22 0 0 chr12 80827161 80827206 -40430324 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1201 1410 130 437 4 chr12 80829321 80829573 -40427957 + RMER6C LTR ERVK 1 348 -342 5 1201 212 137 20 0 chr12 80829573 80829624 -40427906 + (CAGTT)n Simple_repeat Simple_repeat 1 52 0 5 1201 1410 166 242 78 chr12 80829624 80830041 -40427489 + RMER6C LTR ERVK 347 716 -4 5 1201 267 227 198 16 chr12 80830064 80830185 -40427345 - MIRc SINE MIR -123 145 3 5 1201 333 0 0 0 chr12 80831817 80831854 -40425676 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1201 195 167 22 67 chr12 80832130 80832175 -40425355 + L2a LINE L2 3378 3420 -6 5 1201 23 0 0 0 chr12 80834187 80834210 -40423320 + AT_rich Low_complexity Low_complexity 1 23 0 5 1201 21 0 0 0 chr12 80834239 80834260 -40423270 + AT_rich Low_complexity Low_complexity 1 21 0 5 1201 473 326 79 40 chr12 80834566 80834844 -40422686 + B4A SINE B4 2 290 -2 5 1201 189 0 0 0 chr12 80834859 80834880 -40422650 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1201 342 0 0 0 chr12 80834880 80834917 -40422613 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1201 759 271 10 45 chr12 80834931 80835132 -40422398 + B3 SINE B2 3 196 -20 5 1201 662 250 7 20 chr12 80835306 80835457 -40422073 - RSINE1 SINE B4 -10 155 7 5 1201 1107 89 0 7 chr12 80835835 80835982 -40421548 + B1_Mus2 SINE Alu 2 147 0 5 1201 859 161 0 24 chr12 80837383 80837549 -40419981 - MTC LTR MaLR -6 415 254 5 1201 266 159 45 0 chr12 80838262 80838350 -40419180 + (TA)n Simple_repeat Simple_repeat 1 92 0 5 1201 3664 51 0 114 chr12 80838741 80839292 -40418238 + L1_Mus1 LINE L1 6080 6567 0 5 1201 504 0 0 0 chr12 80839328 80839384 -40418146 + (GAA)n Simple_repeat Simple_repeat 3 58 0 5 1201 414 0 0 0 chr12 80839384 80839430 -40418100 + (CAG)n Simple_repeat Simple_repeat 1 46 0 5 1201 503 192 304 0 chr12 80839461 80839622 -40417908 + B3 SINE B2 2 211 -5 5 1201 915 135 0 0 chr12 80839634 80839790 -40417740 + (GAAA)n Simple_repeat Simple_repeat 3 158 0 5 1201 506 293 11 28 chr12 80839879 80840058 -40417472 - MER20 DNA MER1_type -2 217 42 5 1201 195 42 0 0 chr12 80840609 80840633 -40416897 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 5 1201 1484 73 16 0 chr12 80841354 80841545 -40415985 - B2_Mm2 SINE B2 0 195 2 5 1201 3432 172 48 3 chr12 80841551 80842202 -40415328 - Lx9 LINE L1 -1 7643 6964 5 1201 549 284 0 105 chr12 80842583 80842764 -40414766 + RSINE1 SINE B4 2 163 -2 5 1201 584 205 7 1 chr12 80843943 80844066 -40413464 + B3 SINE B2 1 128 -65 5 1201 753 285 24 5 chr12 80844366 80844574 -40412956 + ID_B1 SINE B4 1 212 -12 5 1201 390 315 23 23 chr12 80844720 80844850 -40412680 - MIRb SINE MIR -126 142 13 5 1201 438 20 0 0 chr12 80845061 80845112 -40412418 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1201 373 298 98 27 chr12 80846658 80846882 -40410648 + Charlie5 DNA MER1_type 2379 2618 -6 5 1201 406 299 56 68 chr12 80847633 80847956 -40409574 - L1ME3A LINE L1 -21 6152 5834 5 1201 537 30 0 0 chr12 80848922 80848989 -40408541 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1201 22 0 0 0 chr12 80850660 80850682 -40406848 + AT_rich Low_complexity Low_complexity 1 22 0 5 1201 225 363 53 32 chr12 80851397 80851585 -40405945 + MIRc SINE MIR 34 225 -43 5 1201 575 284 12 24 chr12 80854061 80854227 -40403303 - RSINE1 SINE B4 -1 164 1 5 1201 707 153 35 35 chr12 80854573 80854715 -40402815 + B1_Mus2 SINE Alu 5 146 -1 5 1201 255 267 27 0 chr12 80854803 80854878 -40402652 + MIR SINE MIR 8 84 -178 5 1201 348 234 91 0 chr12 80855142 80855219 -40402311 - RSINE1 SINE B4 -57 108 25 5 1201 347 293 184 24 chr12 80855750 80855918 -40401612 + MIR SINE MIR 36 236 -32 5 1201 543 16 0 0 chr12 80856354 80856418 -40401112 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1201 845 145 0 12 chr12 80857047 80857208 -40400322 + CT-rich Low_complexity Low_complexity 5 163 0 5 1201 523 306 45 93 chr12 80858020 80858376 -40399154 - L1MC4 LINE L1 -79 7963 7625 5 1201 252 0 0 0 chr12 80858441 80858469 -40399061 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1201 216 67 0 0 chr12 80859227 80859257 -40398273 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1201 231 36 0 0 chr12 80859261 80859289 -40398241 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1201 583 231 97 7 chr12 80859361 80859505 -40398025 + B4A SINE B4 2 158 -134 5 1201 196 82 31 47 chr12 80861597 80861661 -40395869 + T-rich Low_complexity Low_complexity 4 66 0 5 1201 288 53 0 0 chr12 80862291 80862329 -40395201 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1201 783 104 0 0 chr12 80862625 80862740 -40394790 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 5 1201 183 204 23 0 chr12 80862864 80862908 -40394622 - MIRb SINE MIR -94 174 130 5 1201 264 321 40 74 chr12 80863927 80864167 -40393363 + MIR3 SINE MIR 14 240 -28 5 1201 771 154 15 0 chr12 80865182 80865318 -40392212 + B1_Mur3 SINE Alu 11 148 -1 5 1201 407 232 0 12 chr12 80865381 80865464 -40392066 - ID4_ SINE ID 0 83 2 5 1201 965 212 0 0 chr12 80865519 80865698 -40391832 + B3 SINE B2 1 179 -37 5 1201 663 256 34 19 chr12 80865702 80865909 -40391621 + L1MA4 LINE L1 5716 5925 -375 5 1201 340 230 35 9 chr12 80866846 80866945 -40390585 - MER20 DNA MER1_type -62 157 57 5 1201 197 159 0 22 chr12 80868329 80868374 -40389156 + G-rich Low_complexity Low_complexity 2 45 0 5 1201 540 0 0 0 chr12 80868596 80868656 -40388874 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1201 2201 238 36 32 chr12 80869651 80870238 -40387292 - RLTR18 LTR ERVK -25 591 3 5 1201 22 0 0 0 chr12 80870404 80870426 -40387104 + AT_rich Low_complexity Low_complexity 1 22 0 5 150 447 68 0 0 chr12 80871366 80871425 -40386105 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 5 1202 212 222 15 45 chr12 80872202 80872268 -40385262 + MER5B DNA MER1_type 110 173 -5 5 1202 1326 93 10 30 chr12 80872625 80872824 -40384706 + B2_Mm2 SINE B2 1 195 0 5 1202 713 11 22 0 chr12 80874582 80874671 -40382859 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 5 1202 210 208 0 0 chr12 80874680 80874733 -40382797 + (TAGG)n Simple_repeat Simple_repeat 2 54 0 5 1202 1104 189 15 0 chr12 80874930 80875126 -40382404 + B3 SINE B2 1 199 -17 5 1202 204 40 0 0 chr12 80875140 80875165 -40382365 + (TAA)n Simple_repeat Simple_repeat 3 27 0 5 1202 331 365 18 6 chr12 80878735 80878903 -40378627 - MIRb SINE MIR -13 255 86 5 1202 351 365 61 57 chr12 80880316 80880595 -40376935 + B4A SINE B4 1 280 -12 5 1202 278 275 66 16 chr12 80880769 80880891 -40376639 + MLT1A0 LTR MaLR 236 363 -2 5 1202 282 312 11 11 chr12 80881343 80881437 -40376093 + LTR33A_ LTR ERVL 15 108 -423 5 1202 681 232 13 6 chr12 80882457 80882613 -40374917 + B3 SINE B2 54 210 -6 5 1202 462 181 24 0 chr12 80882933 80883016 -40374514 + B3 SINE B2 91 175 -41 6 1202 587 297 44 5 chr12 80883533 80883736 -40373794 - B3 SINE B2 -4 212 2 6 1202 330 132 0 0 chr12 80884365 80884418 -40373112 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1202 835 285 70 15 chr12 80884449 80884720 -40372810 - B4A SINE B4 -6 286 1 6 1202 216 135 0 0 chr12 80884755 80884792 -40372738 + (TCC)n Simple_repeat Simple_repeat 2 38 0 6 1202 221 228 138 17 chr12 80884909 80884967 -40372563 - MIR SINE MIR -81 127 63 6 1202 360 64 0 0 chr12 80885181 80885228 -40372302 + (A)n Simple_repeat Simple_repeat 1 47 0 6 1202 1567 89 280 0 chr12 80887569 80887826 -40369704 - ORR1A4 LTR MaLR 0 329 1 6 1202 812 110 217 39 chr12 80887992 80888172 -40369358 + URR1B DNA MER1_type 12 223 -2 6 1202 384 221 70 76 chr12 80888172 80888202 -40369328 - CYRA11_Mm Unknown Y-chromosome -447 170 142 6 1202 218 349 54 18 chr12 80888403 80888514 -40369016 - MIRb SINE MIR -81 187 73 6 1202 644 311 184 35 chr12 80888547 80888977 -40368553 + MLT1K LTR MaLR 7 500 -95 6 1202 241 287 92 69 chr12 80890270 80890401 -40367129 + MT2B LTR ERVL 131 264 -337 6 1202 357 262 40 60 chr12 80890288 80890320 -40367210 + ID_B1 SINE B4 78 221 0 6 1202 685 149 0 9 chr12 80890320 80890435 -40367095 + B1_Mur2 SINE Alu 34 147 -2 6 1202 395 217 0 124 chr12 80890728 80890833 -40366697 + L2c LINE L2 3292 3383 -4 6 1202 519 31 0 0 chr12 80891314 80891379 -40366151 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1202 565 273 149 36 chr12 80891558 80891752 -40365778 + ID_B1 SINE B4 3 218 -6 6 1202 378 0 0 0 chr12 80893014 80893056 -40364474 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1202 411 38 0 0 chr12 80893191 80893244 -40364286 + (TATG)n Simple_repeat Simple_repeat 2 54 0 6 1202 678 177 105 0 chr12 80893250 80893374 -40364156 - B1_Mus1 SINE Alu -7 141 5 6 1202 269 271 0 0 chr12 80893680 80893739 -40363791 + MIRb SINE MIR 132 190 -78 6 1202 351 0 0 0 chr12 80894179 80894218 -40363312 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1202 324 0 0 0 chr12 80894218 80894253 -40363277 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1202 292 137 78 0 chr12 80895003 80895054 -40362476 - L1M4 LINE L1 -3866 2280 2226 6 1202 309 319 38 92 chr12 80895068 80895306 -40362224 + L1M4 LINE L1 2176 2400 -3746 6 1202 292 269 0 29 chr12 80895307 80895376 -40362154 - PB1D10 SINE Alu -2 115 49 6 1202 598 265 72 0 chr12 80895400 80895581 -40361949 + Lx7 LINE L1 7140 7333 -363 6 1202 292 295 18 9 chr12 80895580 80895693 -40361837 + Lx7 LINE L1 7567 7680 -16 6 1202 870 304 64 79 chr12 80895723 80896334 -40361196 + L1M4 LINE L1 2424 3025 -3121 6 1202 251 283 61 30 chr12 80896575 80896706 -40360824 + L1ME2z LINE L1 6193 6327 -117 6 1202 921 208 82 0 chr12 80899033 80899216 -40358314 + B3 SINE B2 2 199 -17 6 1202 288 0 0 0 chr12 80899217 80899249 -40358281 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 6 1202 1058 265 3 85 chr12 80899916 80900234 -40357296 + B4A SINE B4 1 292 0 6 1202 190 276 192 57 chr12 80900664 80900841 -40356689 - L3 LINE CR1 -584 3905 3705 6 1202 1422 67 0 11 chr12 80900957 80901138 -40356392 - B2_Mm2 SINE B2 -16 179 1 6 1202 328 343 125 55 chr12 80901477 80901804 -40355726 - L3 LINE CR1 -926 3563 3214 6 1202 222 62 0 0 chr12 80902106 80902138 -40355392 + (CAG)n Simple_repeat Simple_repeat 1 32 0 6 1202 333 333 57 36 chr12 80902157 80902297 -40355233 - MLT1J LTR MaLR -250 262 120 6 1202 182 65 0 61 chr12 80902297 80902330 -40355200 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 6 1202 270 73 0 0 chr12 80902721 80902762 -40354768 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1202 461 302 8 57 chr12 80902763 80902886 -40354644 - RSINE1 SINE B4 0 165 49 6 1202 332 190 0 12 chr12 80902980 80903065 -40354465 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 1202 237 172 0 0 chr12 80903835 80903899 -40353631 + T-rich Low_complexity Low_complexity 1 64 0 6 1202 868 221 0 0 chr12 80903901 80904050 -40353480 - B1_Mur4 SINE Alu -1 149 1 6 1202 23 0 0 0 chr12 80904053 80904076 -40353454 + AT_rich Low_complexity Low_complexity 1 23 0 6 1202 563 196 0 8 chr12 80904587 80904721 -40352809 + GA-rich Low_complexity Low_complexity 4 136 0 6 1202 533 309 52 9 chr12 80904818 80905030 -40352500 - B4A SINE B4 -9 283 63 6 1202 204 67 0 0 chr12 80906757 80906787 -40350743 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1202 257 298 76 97 chr12 80906789 80906934 -40350596 + B1F1 SINE Alu 1 142 -7 6 1202 1018 226 34 5 chr12 80906934 80907139 -40350391 + B3 SINE B2 1 211 -5 6 1202 359 325 12 0 chr12 80907168 80907251 -40350279 + RSINE1 SINE B4 82 165 0 6 1202 23 33 0 0 chr12 80907264 80907294 -40350236 + AT_rich Low_complexity Low_complexity 1 30 0 6 1202 1251 105 28 6 chr12 80907784 80907966 -40349564 + B2_Mm2 SINE B2 1 186 -9 6 1202 429 129 0 0 chr12 80908957 80909027 -40348503 + (A)n Simple_repeat Simple_repeat 1 70 0 6 1202 1229 126 0 6 chr12 80909617 80909793 -40347737 + B2_Mm2 SINE B2 2 176 -19 6 1202 294 147 0 0 chr12 80910315 80910383 -40347147 + (T)n Simple_repeat Simple_repeat 1 68 0 6 1202 809 213 28 137 chr12 80911318 80911530 -40346000 - B3 SINE B2 -25 191 1 6 1202 431 270 130 91 chr12 80912320 80912605 -40344925 - MLT1J LTR MaLR -145 367 72 6 1202 211 214 0 23 chr12 80913728 80913771 -40343759 + CT-rich Low_complexity Low_complexity 2 43 0 6 1202 595 283 0 14 chr12 80915871 80916011 -40341519 + RSINE1 SINE B4 1 138 -27 6 1202 203 160 39 20 chr12 80916018 80916069 -40341461 + GA-rich Low_complexity Low_complexity 4 55 0 6 1202 367 220 261 8 chr12 80916083 80916202 -40341328 - B1_Mur2 SINE Alu 0 149 1 6 1202 1165 64 33 176 chr12 80916471 80916681 -40340849 + B2_Mm2 SINE B2 1 180 -15 6 1202 305 262 0 23 chr12 80917061 80917147 -40340383 + RLTR25A LTR ERVK 504 587 -516 6 1202 723 34 0 0 chr12 80917081 80917170 -40340360 + B1_Mus2 SINE Alu 48 136 -11 6 1202 368 267 111 23 chr12 80917496 80917695 -40339835 + MER34 LTR ERV1 292 505 -66 6 1202 421 263 136 2 chr12 80917764 80917949 -40339581 + MER34B-int LTR ERV1 41 233 -7974 6 1202 334 94 31 0 chr12 80918249 80918313 -40339217 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1202 200 279 102 23 chr12 80918877 80918965 -40338565 - MIRm SINE MIR -180 96 2 6 1202 251 286 136 52 chr12 80919040 80919195 -40338335 + Charlie24 DNA MER1_type 670 837 -1613 6 1202 631 190 8 8 chr12 80920098 80920215 -40337315 + B3A SINE B2 1 117 -81 6 1202 474 75 0 0 chr12 80920220 80920287 -40337243 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1202 301 91 45 0 chr12 80920558 80920624 -40336906 + (TTTTTG)n Simple_repeat Simple_repeat 3 71 0 6 1202 28 0 0 0 chr12 80921235 80921263 -40336267 + AT_rich Low_complexity Low_complexity 1 28 0 6 1202 198 0 0 0 chr12 80921729 80921751 -40335779 + (CACCC)n Simple_repeat Simple_repeat 4 25 0 6 1202 546 288 71 101 chr12 80923659 80923956 -40333574 - MLT1B LTR MaLR -7 383 96 6 1202 381 301 23 47 chr12 80923987 80924116 -40333414 - B1F1 SINE Alu 0 149 24 6 1202 226 225 134 24 chr12 80924129 80924211 -40333319 - MLT1B LTR MaLR -285 105 15 6 1202 226 295 33 0 chr12 80924520 80924580 -40332950 - Charlie8 DNA MER1_type -2163 265 208 6 1202 347 277 80 58 chr12 80924580 80924718 -40332812 + MER31B LTR ERV1 1 141 -325 6 1202 318 359 19 0 chr12 80924730 80924836 -40332694 + B1F SINE Alu 29 136 -13 6 1202 258 32 0 0 chr12 80924837 80924868 -40332662 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1202 356 212 202 8 chr12 80925037 80925156 -40332374 + MER31B LTR ERV1 303 444 -22 6 1202 321 318 63 50 chr12 80925196 80925355 -40332175 - Charlie8 DNA MER1_type -2243 185 31 6 1202 266 290 328 36 chr12 80925421 80925619 -40331911 + MIR SINE MIR 6 261 -1 6 1202 240 307 26 13 chr12 80925738 80925814 -40331716 - ID4 SINE ID 0 83 7 6 1202 182 204 18 18 chr12 80925819 80925929 -40331601 + (CACCC)n Simple_repeat Simple_repeat 4 113 0 6 1202 260 316 60 54 chr12 80926545 80926569 -40330961 - YREP_Mm Unknown Unknown -1473 339 226 6 1202 521 331 8 8 chr12 80926569 80926703 -40330827 + ID_B1 SINE B4 84 217 -7 6 1202 21 0 0 0 chr12 80927842 80927863 -40329667 + AT_rich Low_complexity Low_complexity 1 21 0 6 1202 229 384 50 14 chr12 80928428 80928647 -40328883 + L2a LINE L2 3182 3408 -18 6 1202 652 285 42 103 chr12 80929464 80929503 -40328027 + B4 SINE B4 47 85 -207 6 1202 228 35 0 0 chr12 80929503 80929532 -40327998 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1202 342 0 0 0 chr12 80929532 80929569 -40327961 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1202 652 285 42 103 chr12 80929569 80929790 -40327740 + B4 SINE B4 86 291 -1 6 1202 951 100 0 0 chr12 80930525 80930675 -40326855 + (CA)n Simple_repeat Simple_repeat 2 151 0 6 1202 357 125 0 0 chr12 80930943 80930999 -40326531 + (TCC)n Simple_repeat Simple_repeat 3 58 0 6 1202 627 250 7 7 chr12 80931290 80931439 -40326091 + B1F2 SINE Alu 1 149 0 6 1202 231 36 0 0 chr12 80932005 80932033 -40325497 + (TCC)n Simple_repeat Simple_repeat 1 28 0 6 1202 396 0 0 0 chr12 80932993 80933037 -40324493 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1202 211 179 0 0 chr12 80933256 80933295 -40324235 + B3 SINE B2 67 105 -111 6 1202 390 91 0 0 chr12 80933340 80933395 -40324135 + (TAA)n Simple_repeat Simple_repeat 3 57 0 6 1202 292 239 0 0 chr12 80933585 80933652 -40323878 - L1MB4 LINE L1 -15 6159 6093 6 1202 299 254 86 60 chr12 80933702 80933819 -40323711 - L1MB4 LINE L1 -180 5994 5875 6 1202 365 301 140 21 chr12 80933821 80933955 -40323575 + Lx8 LINE L1 7135 7293 -180 6 1202 423 0 0 0 chr12 80933955 80934002 -40323528 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1202 365 301 140 21 chr12 80934002 80934060 -40323470 + Lx8 LINE L1 7294 7350 -123 6 1202 682 251 54 88 chr12 80934060 80934265 -40323265 + B3A SINE B2 1 198 0 6 1202 300 287 102 0 chr12 80934282 80934390 -40323140 + Lx8 LINE L1 7353 7471 -2 6 1202 717 302 38 41 chr12 80934394 80934736 -40322794 - L1MB4 LINE L1 -313 5867 5527 6 1202 2478 168 10 12 chr12 80935238 80935643 -40321887 - MTC LTR MaLR -8 413 10 6 1202 2156 182 42 17 chr12 80935906 80936314 -40321216 + MTD LTR MaLR 2 419 0 7 1202 2437 165 102 17 chr12 80936666 80937203 -40320327 + RLTR31A_Mm LTR ERVK 2 584 0 7 1202 312 271 50 61 chr12 80937436 80937647 -40319883 + MLT1C LTR MaLR 10 210 -180 7 1202 404 316 45 26 chr12 80937700 80937856 -40319674 + MLT1C LTR MaLR 304 462 -5 7 1202 263 304 192 25 chr12 80938123 80938315 -40319215 - MIRb SINE MIR 0 268 36 7 1202 843 243 64 30 chr12 80938497 80938764 -40318766 + B4A SINE B4 1 276 -16 7 1202 570 13 38 0 chr12 80942586 80942665 -40314865 + (GGGA)n Simple_repeat Simple_repeat 4 85 0 7 1202 265 244 12 0 chr12 80943076 80943236 -40314294 + (CA)n Simple_repeat Simple_repeat 2 163 0 7 1202 297 51 0 0 chr12 80944430 80944469 -40313061 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1202 333 0 0 0 chr12 80945921 80945958 -40311572 + (TGG)n Simple_repeat Simple_repeat 3 39 0 7 1202 621 240 206 6 chr12 80947260 80947440 -40310090 - MER58A DNA MER1_type -6 218 3 7 1202 183 100 0 0 chr12 80949245 80949275 -40308255 + (CCCCCA)n Simple_repeat Simple_repeat 5 34 0 7 1202 517 344 115 21 chr12 80950135 80950423 -40307107 - MER2 DNA MER2_type 0 345 31 7 1202 202 298 107 53 chr12 80950469 80950600 -40306930 - L2a LINE L2 -245 3181 3044 7 1202 187 200 58 39 chr12 80951254 80951306 -40306224 + MIRb SINE MIR 37 89 -179 7 1202 555 338 46 5 chr12 80951331 80951527 -40306003 - MER3 DNA MER1_type 0 209 6 7 1202 929 304 68 8 chr12 80952080 80952332 -40305198 + B4 SINE B4 2 268 -24 7 1202 180 0 0 0 chr12 80952343 80952363 -40305167 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1202 810 309 120 34 chr12 80952930 80953395 -40304135 + L2 LINE L2 2476 2980 -439 7 1202 269 173 0 36 chr12 80953488 80953572 -40303958 + (CAAA)n Simple_repeat Simple_repeat 2 82 0 7 1202 351 209 30 0 chr12 80953634 80953701 -40303829 + tRNA-His-CAY_ tRNA tRNA 5 73 -2 7 1202 872 241 18 28 chr12 80953731 80953949 -40303581 + B3 SINE B2 1 216 0 7 1202 307 206 44 53 chr12 80953985 80954098 -40303432 + Charlie1b DNA MER1_type 222 333 -190 7 1202 304 296 263 9 chr12 80954524 80954752 -40302778 + MLT1F LTR MaLR 259 544 -4 7 1202 1985 253 119 62 chr12 80954830 80955619 -40301911 - Charlie1a DNA MER1_type -116 1339 506 7 1202 288 300 0 99 chr12 80955751 80955862 -40301668 - Charlie1a DNA MER1_type -1158 297 198 7 1202 410 320 16 0 chr12 80955882 80956007 -40301523 - Charlie1a DNA MER1_type -1328 127 1 7 1202 412 252 126 96 chr12 80957253 80957420 -40300110 + MER63B DNA AcHobo 262 433 -3 7 1202 201 299 51 73 chr12 80957504 80957641 -40299889 + MER5A DNA MER1_type 49 182 -7 7 1202 225 306 264 0 chr12 80958170 80958291 -40299239 + RSINE1 SINE B4 9 161 -4 7 1202 298 306 14 0 chr12 80959102 80959174 -40298356 + ID4 SINE ID 2 74 -9 7 1202 217 277 0 0 chr12 80959184 80959231 -40298299 + polypurine Low_complexity Low_complexity 4 50 0 7 1202 244 333 41 10 chr12 80959843 80959940 -40297590 - MIR SINE MIR -5 257 158 7 1202 522 0 0 0 chr12 80960199 80960257 -40297273 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1202 477 224 3 11 chr12 80961715 80961829 -40295701 + B1_Mur1 SINE Alu 2 141 -8 7 1202 195 232 112 34 chr12 80961980 80962069 -40295461 - MIRm SINE MIR -93 183 88 7 1202 228 213 78 26 chr12 80962614 80962691 -40294839 + BC1_Mm scRNA scRNA 23 103 -49 7 1202 327 206 75 1 chr12 80962752 80962821 -40294709 + PB1D10 SINE Alu 2 80 -40 7 1202 2617 55 61 3 chr12 80962821 80963148 -40294382 + ORR1A1 LTR MaLR 1 346 0 7 1202 267 208 196 10 chr12 80963148 80963175 -40294355 + PB1D7 SINE Alu 81 116 -4 7 1202 2002 149 51 9 chr12 80963282 80963614 -40293916 + ORR1B1 LTR MaLR 41 386 -8 7 1202 244 281 62 48 chr12 80963647 80963783 -40293747 + MLT1D LTR MaLR 1 139 -488 7 1202 682 320 76 8 chr12 80963843 80964079 -40293451 + MLT1D LTR MaLR 249 500 -5 7 1202 369 0 0 0 chr12 80964198 80964239 -40293291 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1202 1193 165 24 5 chr12 80964633 80964840 -40292690 + B3 SINE B2 1 211 -5 7 1202 309 272 32 113 chr12 80964877 80964959 -40292571 + MIRc SINE MIR 21 106 -102 7 1202 290 229 171 0 chr12 80964959 80965029 -40292501 + ID2 SINE ID 2 83 0 7 1202 309 215 28 131 chr12 80965029 80965084 -40292446 + MIRc SINE MIR 102 155 -113 7 1202 381 248 36 18 chr12 80965197 80965308 -40292222 - PB1D10 SINE Alu -4 113 1 7 1202 873 257 73 15 chr12 80966869 80967130 -40290400 - B4A SINE B4 -16 276 1 7 1202 749 263 10 51 chr12 80967178 80967374 -40290156 - B3A SINE B2 0 198 11 7 1202 255 311 189 14 chr12 80967628 80967840 -40289690 + L4 LINE RTE 1780 2028 -1 7 1202 22 35 0 0 chr12 80968280 80968309 -40289221 + AT_rich Low_complexity Low_complexity 1 29 0 7 1202 325 237 0 106 chr12 80968309 80968441 -40289089 - L1MEe LINE L1 -4570 284 167 7 1202 414 0 0 0 chr12 80968507 80968553 -40288977 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1202 234 0 0 0 chr12 80968553 80968578 -40288952 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1202 501 17 0 0 chr12 80968578 80968635 -40288895 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1202 663 250 118 43 chr12 80968651 80968906 -40288624 - B4A SINE B4 -14 278 5 7 1202 909 241 81 24 chr12 80969352 80969437 -40288093 + ERVL-B4-int LTR ERVL 4584 4670 -1044 7 1202 450 0 0 0 chr12 80969437 80969487 -40288043 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 1202 909 241 81 24 chr12 80969487 80969648 -40287882 + ERVL-B4-int LTR ERVL 4671 4843 -871 7 1202 895 249 100 56 chr12 80969643 80970117 -40287413 + ERVL-B4-int LTR ERVL 5257 5728 -33 7 1202 656 35 0 23 chr12 80970257 80970345 -40287185 + (TTCTC)n Simple_repeat Simple_repeat 1 86 0 7 1202 2048 116 24 6 chr12 80970350 80970681 -40286849 + MTC LTR MaLR 2 421 0 7 1202 266 0 0 29 chr12 80971154 80971189 -40286341 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1202 268 250 82 18 chr12 80971199 80971309 -40286221 + L1_Rod LINE L1 734 850 -6322 7 1202 566 244 8 0 chr12 80971309 80971428 -40286102 + B1F2 SINE Alu 1 120 -29 7 1202 195 42 0 0 chr12 80971443 80971467 -40286063 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 7 1202 651 196 0 0 chr12 80971467 80971600 -40285930 + GA-rich Low_complexity Low_complexity 1 133 0 7 1202 2163 309 87 28 chr12 80971600 80973430 -40284100 + L1M2 LINE L1 1790 3856 -2732 7 1202 374 314 76 61 chr12 80973435 80973632 -40283898 + B4 SINE B4 1 200 -92 7 1202 304 228 33 1 chr12 80973867 80973970 -40283560 + L1M2 LINE L1 3822 3926 -2662 7 1202 496 40 13 13 chr12 80974015 80974091 -40283439 + (TTTTG)n Simple_repeat Simple_repeat 5 80 0 7 1202 717 151 0 0 chr12 80974091 80974197 -40283333 - PB1D9 SINE Alu -14 106 1 7 1202 378 0 0 0 chr12 80974306 80974348 -40283182 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 7 1202 665 24 0 12 chr12 80974398 80974482 -40283048 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 7 1202 256 306 71 0 chr12 80974491 80974576 -40282954 - B1F SINE Alu -58 91 1 7 1202 1413 51 0 0 chr12 80974587 80974765 -40282765 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 7 1202 204 209 0 0 chr12 80974765 80974808 -40282722 + CT-rich Low_complexity Low_complexity 2 44 0 7 1202 207 100 0 0 chr12 80974831 80974861 -40282669 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 7 1202 477 0 0 0 chr12 80974983 80975036 -40282494 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1202 1099 135 141 0 chr12 80975164 80975349 -40282181 - B3 SINE B2 -4 212 2 7 1202 367 296 0 2 chr12 80975823 80975916 -40281614 + ID4 SINE ID 7 98 -54 7 1202 710 232 21 62 chr12 80976269 80976462 -40281068 + B3A SINE B2 3 187 -11 7 1202 692 219 21 12 chr12 80976487 80976628 -40280902 + B3 SINE B2 54 195 -21 7 1202 246 35 0 0 chr12 80976629 80976658 -40280872 + RMER6A LTR ERVK 2 30 -431 7 1202 3660 126 23 18 chr12 80976661 80977270 -40280260 + RMER6A LTR ERVK 145 756 0 7 1202 185 35 0 65 chr12 80977602 80977633 -40279897 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 7 1202 437 50 0 16 chr12 80977812 80977873 -40279657 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1202 960 270 11 59 chr12 80977875 80978162 -40279368 - B4A SINE B4 -18 274 2 7 1202 304 301 0 0 chr12 80978254 80978337 -40279193 + ID4_ SINE ID 1 83 0 7 1202 2004 162 77 6 chr12 80978348 80978713 -40278817 - ORR1B1 LTR MaLR -2 392 2 7 1202 459 113 0 0 chr12 80978716 80978787 -40278743 + (GGGA)n Simple_repeat Simple_repeat 4 74 0 7 1202 609 312 9 42 chr12 80979530 80979744 -40277786 + MER115 DNA Tip100 487 693 0 7 1202 442 302 117 66 chr12 80979744 80980012 -40277518 + MER102a DNA MER1_type 49 330 0 7 1202 351 0 0 0 chr12 80981300 80981339 -40276191 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1202 675 278 66 7 chr12 80981370 80981522 -40276008 - RSINE1 SINE B4 -2 163 3 7 1202 339 44 0 0 chr12 80981530 80981575 -40275955 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 1202 287 239 15 15 chr12 80981704 80981772 -40275758 + ID4 SINE ID 15 82 -1 7 1202 367 172 234 11 chr12 80982587 80982681 -40274849 - PB1D10 SINE Alu 0 117 3 7 1202 636 205 50 90 chr12 80983492 80983677 -40273853 + B3A SINE B2 37 188 -7 7 1202 2051 223 143 46 chr12 80983672 80983848 -40273682 + RCHARR1 DNA MER1_type 127 307 -667 7 1202 1343 88 28 0 chr12 80983848 80984029 -40273501 + B2_Mm2 SINE B2 2 187 -8 7 1202 2051 223 143 46 chr12 80984029 80984301 -40273229 + RCHARR1 DNA MER1_type 308 624 -350 7 1202 387 127 0 0 chr12 80984301 80984364 -40273166 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1202 2051 223 143 46 chr12 80984364 80984585 -40272945 + RCHARR1 DNA MER1_type 625 861 -113 7 1202 785 91 9 0 chr12 80984638 80984748 -40272782 + B1_Mus2 SINE Alu 37 147 0 7 1202 213 39 0 0 chr12 80984748 80984774 -40272756 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1202 541 278 38 0 chr12 80984789 80984922 -40272608 - B4 SINE B4 -76 216 79 7 1202 393 231 33 11 chr12 80984929 80985021 -40272509 + RCHARR1 DNA MER1_type 881 974 0 7 1202 498 265 97 18 chr12 80985850 80986015 -40271515 - MTEb LTR MaLR 0 379 202 7 1202 701 173 79 0 chr12 80986069 80986196 -40271334 - B1F2 SINE Alu -1 148 12 7 1202 540 216 47 61 chr12 80986196 80986217 -40271313 - ID_B1 SINE B4 -1 223 78 7 1202 475 248 45 9 chr12 80986211 80986321 -40271209 - B1F2 SINE Alu 0 149 36 8 1202 257 351 38 66 chr12 80986323 80986506 -40271024 - MTEb LTR MaLR -201 178 1 7 1202 588 292 39 7 chr12 80986509 80986664 -40270866 - MER58A DNA MER1_type -64 160 1 8 1202 269 253 66 13 chr12 80987093 80987169 -40270361 + RMER15 LTR ERVL 440 519 -56 8 1202 208 258 112 95 chr12 80987495 80987643 -40269887 - MIRm SINE MIR -87 181 36 8 1202 773 244 70 10 chr12 80987676 80987875 -40269655 + B3 SINE B2 1 211 -5 8 1202 254 318 96 72 chr12 80988216 80988382 -40269148 - AmnSINE1 SINE SINE -405 170 1 8 1202 705 274 6 33 chr12 80989647 80989828 -40267702 + ID_B1 SINE B4 11 186 -38 8 1202 915 244 5 25 chr12 80989841 80990043 -40267487 + B3 SINE B2 1 198 -18 8 1202 432 0 0 0 chr12 80990161 80990209 -40267321 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1202 344 344 83 56 chr12 80990246 80990677 -40266853 - L2 LINE L2 -826 2593 2151 8 1202 238 331 52 30 chr12 80993004 80993138 -40264392 - L3 LINE CR1 -71 4418 4282 8 1202 1131 81 14 0 chr12 80993570 80993718 -40263812 - B1_Mur4 SINE Alu 0 150 1 8 1202 225 384 29 35 chr12 80993982 80994152 -40263378 - MamRep434 DNA TcMar -131 295 127 8 1202 448 102 49 35 chr12 80995460 80995603 -40261927 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 8 1202 200 302 19 19 chr12 80995610 80995664 -40261866 - MIRb SINE MIR -182 86 33 8 1202 349 369 7 54 chr12 80995728 80995877 -40261653 + MER102c DNA MER1_type 7 148 -183 8 1202 279 311 96 24 chr12 80996435 80996560 -40260970 + AmnSINE1 SINE SINE 340 473 -102 8 1202 374 323 107 34 chr12 80996641 80996846 -40260684 - L1ME4a LINE L1 -1 6123 5904 8 1202 251 267 17 0 chr12 80996985 80997045 -40260485 + MER50B LTR ERV1 85 145 -552 8 1202 926 127 13 0 chr12 80998110 80998267 -40259263 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 8 1202 234 264 72 120 chr12 80999778 80999903 -40257627 - MLT1H LTR MaLR -268 281 163 8 1202 459 322 95 95 chr12 81000004 81000416 -40257114 - MLT1C LTR MaLR -9 458 47 1 1202 2853 219 73 17 chr12 81000416 81001114 -40256416 + Lx6 LINE L1 6699 7435 -25 2 1202 347 246 11 39 chr12 81001294 81001476 -40256054 + (TA)n Simple_repeat Simple_repeat 2 178 0 3 1202 655 221 99 20 chr12 81001803 81001955 -40255575 - B4 SINE B4 -43 249 86 4 1202 418 232 31 118 chr12 81001974 81002135 -40255395 - B3A SINE B2 -1 197 51 5 1202 459 0 0 0 chr12 81002139 81002190 -40255340 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 6 1202 313 211 26 26 chr12 81002196 81002274 -40255256 - B4 SINE B4 -213 79 2 4 1202 583 259 35 14 chr12 81002335 81002480 -40255050 - B1F SINE Alu -1 148 1 7 1203 204 302 0 0 chr12 81002982 81003108 -40254422 + (CA)n Simple_repeat Simple_repeat 1 126 0 8 1203 309 26 0 0 chr12 81003153 81003191 -40254339 + (TC)n Simple_repeat Simple_repeat 1 38 0 9 1203 432 335 42 18 chr12 81004184 81004372 -40253158 + MIR SINE MIR 26 223 -45 1 1203 189 184 48 34 chr12 81004546 81004692 -40252838 + (TCTCTG)n Simple_repeat Simple_repeat 3 150 0 1 1203 480 255 0 70 chr12 81005197 81005311 -40252219 - PB1D10 SINE Alu -1 116 11 1 1203 520 239 47 40 chr12 81005387 81005535 -40251995 + RSINE1 SINE B4 5 153 -12 1 1203 270 0 0 0 chr12 81005687 81005717 -40251813 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 1203 242 363 23 39 chr12 81008626 81008755 -40248775 - L3 LINE CR1 -105 4384 4258 1 1203 849 177 7 0 chr12 81008995 81009136 -40248394 + B1_Mur2 SINE Alu 3 144 -5 1 1203 29 0 0 0 chr12 81009136 81009165 -40248365 + AT_rich Low_complexity Low_complexity 1 29 0 1 1203 1371 78 15 25 chr12 81009168 81009364 -40248166 + B2_Mm2 SINE B2 2 195 0 1 1203 420 276 161 19 chr12 81009375 81009530 -40248000 + B4A SINE B4 1 177 -115 1 1203 735 252 150 15 chr12 81009871 81010145 -40247385 - L1MC1 LINE L1 -18 6315 6005 2 1203 294 29 0 0 chr12 81010472 81010507 -40247023 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1203 403 278 113 36 chr12 81010654 81010861 -40246669 + B4A SINE B4 1 223 -69 2 1203 594 51 0 0 chr12 81010901 81010979 -40246551 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1203 482 0 17 0 chr12 81011700 81011758 -40245772 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1203 1333 282 66 45 chr12 81013984 81014328 -40243202 - MLT1D LTR MaLR -1 504 170 2 1203 1387 75 32 0 chr12 81014328 81014515 -40243015 + B2_Mm2 SINE B2 1 193 -2 2 1203 1333 282 66 45 chr12 81014515 81014653 -40242877 - MLT1D LTR MaLR -336 169 12 2 1203 271 143 58 58 chr12 81015606 81015658 -40241872 - PB1D10 SINE Alu 0 117 66 2 1203 606 225 14 79 chr12 81015612 81015752 -40241778 - ID_B1 SINE B4 -3 221 91 2 1203 323 275 138 31 chr12 81016113 81016308 -40241222 + L2 LINE L2 2861 3076 -343 2 1203 1093 313 14 0 chr12 81016403 81016672 -40240858 + MTEa LTR MaLR 1 273 -106 3 1203 1687 121 59 79 chr12 81016672 81016977 -40240553 + ORR1C1 LTR MaLR 1 299 -79 3 1203 900 157 200 0 chr12 81017273 81017458 -40240072 - URR1A DNA MER1_type 0 226 5 3 1203 226 388 68 68 chr12 81018071 81018292 -40239238 - LTR33 LTR ERVL -131 384 164 3 1203 2554 146 16 100 chr12 81019411 81019920 -40237610 + RMER4A LTR ERVK 1 466 0 3 1203 662 310 0 62 chr12 81020042 81020252 -40237278 + B3A SINE B2 2 198 0 3 1203 743 231 0 0 chr12 81020849 81020983 -40236547 - B1_Mur2 SINE Alu -15 134 1 3 1203 239 320 20 20 chr12 81021004 81021106 -40236424 - MER21B LTR ERV1 -155 708 607 3 1203 434 349 55 15 chr12 81021106 81021307 -40236223 - MER21B LTR ERV1 -493 370 162 3 1203 584 305 93 78 chr12 81021297 81021642 -40235888 - ORR1E LTR MaLR -6 353 4 3 1203 262 260 69 61 chr12 81022634 81022705 -40234825 - MER53 DNA hAT -41 152 83 3 1203 207 0 0 0 chr12 81022705 81022728 -40234802 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1203 324 0 0 0 chr12 81022728 81022763 -40234767 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1203 262 260 69 61 chr12 81022763 81022821 -40234709 - MER53 DNA hAT -111 82 22 3 1203 675 50 30 0 chr12 81023021 81023121 -40234409 + (TC)n Simple_repeat Simple_repeat 1 103 0 4 1203 908 111 95 32 chr12 81023501 81023659 -40233871 + URR1B DNA MER1_type 58 225 0 4 1203 748 242 120 5 chr12 81023926 81024142 -40233388 - MER115 DNA Tip100 0 693 453 4 1203 678 310 0 25 chr12 81024203 81024217 -40233313 - RSINE1 SINE B4 -4 161 151 4 1203 387 0 0 0 chr12 81024217 81024260 -40233270 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1203 678 310 0 25 chr12 81024260 81024407 -40233123 - RSINE1 SINE B4 -15 150 4 4 1203 233 361 76 87 chr12 81024452 81024637 -40232893 - MER115 DNA Tip100 -350 343 161 4 1203 191 274 0 31 chr12 81026063 81026127 -40231403 - L3 LINE CR1 -125 4364 4303 4 1203 378 0 0 0 chr12 81027730 81027772 -40229758 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1203 39 38 0 0 chr12 81027849 81027902 -40229628 + AT_rich Low_complexity Low_complexity 1 53 0 4 1203 423 0 0 0 chr12 81027933 81027980 -40229550 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1203 300 138 0 0 chr12 81027986 81028051 -40229479 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1203 245 304 13 26 chr12 81028065 81028154 -40229376 - B1_Mus1 SINE Alu -54 93 6 5 1203 204 236 87 33 chr12 81029582 81029674 -40227856 + MIRm SINE MIR 82 178 -98 5 1203 339 44 0 0 chr12 81030460 81030505 -40227025 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1203 390 130 0 0 chr12 81032289 81032357 -40225173 + B1_Mus2 SINE Alu 50 147 0 5 1203 225 0 0 0 chr12 81032357 81032382 -40225148 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1203 417 20 0 0 chr12 81032931 81032981 -40224549 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1203 1358 40 101 6 chr12 81033563 81033583 -40223947 - B2_Mm2 SINE B2 0 195 176 5 1203 186 43 0 0 chr12 81033583 81033606 -40223924 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1203 1358 40 101 6 chr12 81033606 81033763 -40223767 - B2_Mm2 SINE B2 -20 175 2 5 1203 234 281 31 15 chr12 81034477 81034607 -40222923 + L1ME4a LINE L1 5968 6099 -25 6 1203 833 206 14 0 chr12 81036125 81036271 -40221259 + B1_Mur2 SINE Alu 1 148 -1 6 1203 229 281 0 17 chr12 81038104 81038162 -40219368 + GA-rich Low_complexity Low_complexity 4 60 0 6 1203 348 24 0 0 chr12 81039409 81039450 -40218080 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1203 1155 229 85 37 chr12 81039490 81039690 -40217840 - B4 SINE B4 0 292 86 6 1203 225 65 0 0 chr12 81039690 81039721 -40217809 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1203 1155 229 85 37 chr12 81039721 81039792 -40217738 - B4 SINE B4 -207 85 8 6 1203 477 0 0 0 chr12 81039974 81040027 -40217503 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1203 396 221 0 0 chr12 81040027 81040116 -40217414 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 6 1203 955 147 14 0 chr12 81040762 81040905 -40216625 + B1_Mur4 SINE Alu 1 145 -5 6 1203 459 0 0 0 chr12 81040906 81040957 -40216573 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 1203 298 269 45 0 chr12 81041707 81041774 -40215756 - ID4 SINE ID -8 75 6 7 1203 693 66 0 0 chr12 81041775 81041866 -40215664 + (TA)n Simple_repeat Simple_repeat 2 92 0 7 1203 984 241 87 43 chr12 81041912 81042189 -40215341 - B4 SINE B4 -2 290 2 7 1203 273 29 0 0 chr12 81042319 81042353 -40215177 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1203 1109 254 32 25 chr12 81042415 81042698 -40214832 - B4A SINE B4 -6 286 2 7 1203 549 0 0 0 chr12 81042831 81042892 -40214638 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1203 540 329 25 32 chr12 81042892 81043049 -40214481 - RSINE1 SINE B4 -5 160 5 7 1203 423 56 0 0 chr12 81043295 81043349 -40214181 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1203 231 114 0 0 chr12 81044584 81044619 -40212911 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 7 1203 439 255 108 57 chr12 81044811 81044969 -40212561 - MLT1C LTR MaLR -34 433 268 7 1203 444 276 16 41 chr12 81045026 81045147 -40212383 - B4 SINE B4 -173 119 2 8 1203 719 307 40 5 chr12 81045259 81045560 -40211970 - Lx8 LINE L1 -1553 5920 5592 8 1203 279 0 0 0 chr12 81046141 81046172 -40211358 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1203 282 147 44 0 chr12 81048368 81048436 -40209094 + (TA)n Simple_repeat Simple_repeat 1 71 0 8 1203 317 330 43 70 chr12 81048437 81048623 -40208907 - L1MC4a LINE L1 -1203 6679 6499 8 1203 360 0 0 0 chr12 81050452 81050492 -40207038 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 1203 459 0 0 0 chr12 81050492 81050542 -40206988 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1203 306 226 40 70 chr12 81050628 81050646 -40206884 + MT2B2 LTR ERVL 149 163 -421 8 1203 354 304 33 0 chr12 81050646 81050738 -40206792 + PB1D10 SINE Alu 2 96 -21 8 1203 681 263 68 8 chr12 81050919 81051153 -40206377 + L1MB3 LINE L1 5894 6141 -42 8 1203 949 246 80 29 chr12 81051156 81051432 -40206098 + B4 SINE B4 3 292 0 9 1203 252 184 30 30 chr12 81051435 81051536 -40205994 + (CATA)n Simple_repeat Simple_repeat 2 102 0 9 1203 249 159 0 0 chr12 81051641 81051685 -40205845 + GA-rich Low_complexity Low_complexity 3 46 0 9 1203 229 274 14 0 chr12 81052416 81052489 -40205041 - L1MB5 LINE L1 -1 6173 6100 9 1203 543 271 90 97 chr12 81052490 81052800 -40204730 - LTR48B LTR ERV1 0 787 438 9 1203 579 154 58 0 chr12 81052752 81052856 -40204674 + B1_Mur1 SINE Alu 40 149 0 9 1203 311 317 149 20 chr12 81052923 81053071 -40204459 + L1MB7 LINE L1 5964 6130 -54 9 1203 513 141 120 0 chr12 81053095 81053187 -40204343 + B1_Mur2 SINE Alu 34 136 -13 9 1203 402 69 0 0 chr12 81053187 81053245 -40204285 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1203 222 143 0 79 chr12 81053356 81053432 -40204098 + (TTTAA)n Simple_repeat Simple_repeat 1 70 0 9 1203 404 208 0 72 chr12 81053477 81053534 -40203996 - ID4 SINE ID 0 83 31 1 1203 3381 35 2 12 chr12 81053534 81053934 -40203596 - MTA_Mm LTR MaLR 0 396 1 1 1203 404 208 0 72 chr12 81053934 81053959 -40203571 - ID4 SINE ID -53 30 7 1 1203 369 302 173 11 chr12 81053989 81054441 -40203089 - L1MEc LINE L1 -3403 2916 2392 1 1203 453 36 0 0 chr12 81054490 81054545 -40202985 + (TCC)n Simple_repeat Simple_repeat 1 55 0 1 1203 463 242 84 63 chr12 81054628 81054996 -40202534 - L1MEc LINE L1 -4554 1861 1470 1 1203 875 174 7 7 chr12 81055011 81055156 -40202374 - B1_Mus2 SINE Alu 0 147 3 1 1203 302 288 12 12 chr12 81055156 81055237 -40202293 - ID4_ SINE ID -1 82 2 1 1203 602 299 182 45 chr12 81055289 81055910 -40201620 - L1MEc LINE L1 -5022 1378 673 1 1203 490 250 26 9 chr12 81056201 81056314 -40201216 - PB1D10 SINE Alu 0 117 3 1 1203 2269 155 71 5 chr12 81056469 81056864 -40200666 - MTC LTR MaLR 0 421 1 1 1203 623 191 15 0 chr12 81056869 81057005 -40200525 + CT-rich Low_complexity Low_complexity 2 139 0 1 1203 752 163 55 28 chr12 81057005 81057150 -40200380 - B1_Mur4 SINE Alu 0 150 2 1 1203 420 340 165 8 chr12 81057451 81057718 -40199812 + LTR33 LTR ERVL 22 330 -185 1 1203 558 303 52 7 chr12 81058071 81058217 -40199313 + B3A SINE B2 5 158 -40 1 1203 201 121 0 0 chr12 81058217 81058250 -40199280 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1203 558 304 83 765 chr12 81058250 81058278 -40199252 + B3A SINE B2 157 184 -11 1 1203 359 202 11 0 chr12 81059204 81059298 -40198232 + (CCCA)n Simple_repeat Simple_repeat 2 96 0 1 1203 645 234 112 48 chr12 81059443 81059701 -40197829 + RLTR11A2 LTR ERVK 3 264 -264 1 1203 969 238 145 4 chr12 81060018 81060259 -40197271 + B4 SINE B4 2 276 -16 1 1203 432 0 0 0 chr12 81060270 81060318 -40197212 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1203 360 0 0 0 chr12 81060318 81060357 -40197173 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1203 255 227 40 120 chr12 81060698 81060823 -40196707 + MIRm SINE MIR 157 271 -5 1 1203 245 260 12 61 chr12 81062836 81062918 -40194612 - MIR SINE MIR -81 127 50 1 1203 984 141 0 0 chr12 81064950 81065113 -40192417 + (TCC)n Simple_repeat Simple_repeat 3 165 0 1 1203 1153 59 0 0 chr12 81065404 81065540 -40191990 + B1_Mus1 SINE Alu 1 136 -12 1 1203 1216 40 0 38 chr12 81065540 81065724 -40191806 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1 1203 287 49 24 0 chr12 81065724 81065765 -40191765 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1203 261 0 0 0 chr12 81065890 81065919 -40191611 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1203 240 211 40 0 chr12 81066212 81066288 -40191242 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 1 1203 339 314 77 13 chr12 81066293 81066448 -40191082 - L1M4b LINE L1 -5410 1924 1760 1 1203 508 265 194 9 chr12 81067803 81068035 -40189495 + B4A SINE B4 1 275 -17 1 1203 21 0 0 0 chr12 81068064 81068085 -40189445 + AT_rich Low_complexity Low_complexity 1 21 0 1 1203 1687 263 16 12 chr12 81069055 81069486 -40188044 + Tigger8 DNA MER2_type 97 529 -137 1 1203 401 254 33 1 chr12 81069877 81069982 -40187548 + PB1D10 SINE Alu 1 106 -11 1 1203 482 258 119 41 chr12 81069984 81070178 -40187352 + B3 SINE B2 4 212 -4 1 1203 272 330 9 35 chr12 81071870 81071986 -40185544 + MIR SINE MIR 29 141 -121 1 1203 254 231 0 154 chr12 81073129 81073252 -40184278 - Charlie5 DNA MER1_type -11 2613 2510 1 1203 376 274 41 111 chr12 81073254 81073426 -40184104 + B4A SINE B4 2 161 -131 1 1203 288 252 153 49 chr12 81073413 81073546 -40183984 + B3A SINE B2 12 180 -36 1 1203 1191 172 35 0 chr12 81073564 81073762 -40183768 - B3 SINE B2 -10 206 2 1 1203 313 187 0 167 chr12 81073786 81073882 -40183648 + B4A SINE B4 213 292 0 1 1203 24 0 0 0 chr12 81074304 81074328 -40183202 + AT_rich Low_complexity Low_complexity 1 24 0 1 1203 448 135 19 19 chr12 81074951 81075057 -40182473 - Lx LINE L1 0 6654 6549 1 1203 1068 76 139 0 chr12 81075058 81075230 -40182300 + Lx2 LINE L1 6573 6768 -229 1 1203 1110 23 0 0 chr12 81075247 81075378 -40182152 - B1_Mm SINE Alu 0 147 17 1 1203 654 199 25 44 chr12 81075378 81075405 -40182125 - ID_B1 SINE B4 0 224 70 1 1203 186 71 0 0 chr12 81076535 81076563 -40180967 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1203 1392 71 33 0 chr12 81077730 81077913 -40179617 + B2_Mm2 SINE B2 2 190 -5 1 1203 221 235 0 0 chr12 81077917 81077968 -40179562 + GA-rich Low_complexity Low_complexity 2 52 0 1 1203 446 284 50 56 chr12 81078146 81078344 -40179186 - RLTR42-int LTR ERVK -4126 1396 1200 1 1203 603 285 23 35 chr12 81078421 81078592 -40178938 + ID_B1 SINE B4 2 170 -54 1 1203 372 326 31 0 chr12 81078509 81078607 -40178923 + PB1D10 SINE Alu 7 107 -10 1 1203 2470 244 56 60 chr12 81078977 81079423 -40178107 - L1MC LINE L1 -1776 4370 3940 1 1203 1014 54 0 0 chr12 81079423 81079552 -40177978 + (TTGG)n Simple_repeat Simple_repeat 1 129 0 1 1203 910 232 14 19 chr12 81079552 81079759 -40177771 - ID_B1 SINE B4 -17 207 2 1 1203 2470 244 56 60 chr12 81079759 81080295 -40177235 - L1MC LINE L1 -2207 3939 3392 1 1203 351 0 0 0 chr12 81080329 81080368 -40177162 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1203 465 238 58 29 chr12 81080902 81081075 -40176455 - L1MC LINE L1 -3195 2951 2774 1 1203 360 267 111 0 chr12 81081113 81081203 -40176327 + PB1D10 SINE Alu 18 117 0 1 1203 186 283 22 0 chr12 81081286 81081332 -40176198 - MIRm SINE MIR -6 270 224 1 1203 467 60 15 0 chr12 81081375 81081442 -40176088 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1203 940 173 0 0 chr12 81081442 81081581 -40175949 - B1_Mur3 SINE Alu -9 140 2 1 1203 306 125 0 0 chr12 81081594 81081642 -40175888 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1203 593 219 53 0 chr12 81081661 81081775 -40175755 - B3A SINE B2 -70 128 9 1 1203 641 239 5 78 chr12 81081805 81082009 -40175521 - MER53 DNA hAT -1 192 4 1 1203 712 204 106 26 chr12 81082183 81082334 -40175196 + RSINE1 SINE B4 2 164 -1 1 1203 252 86 0 0 chr12 81082501 81082536 -40174994 + (TTG)n Simple_repeat Simple_repeat 3 37 0 1 1203 220 261 31 0 chr12 81082554 81082619 -40174911 + (TATG)n Simple_repeat Simple_repeat 3 69 0 1 1203 748 256 173 8 chr12 81082621 81082869 -40174661 - B4A SINE B4 -2 290 2 1 1203 180 176 0 0 chr12 81082880 81082914 -40174616 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1 1203 829 184 26 24 chr12 81083100 81083281 -40174249 - B3 SINE B2 -5 188 10 1 1203 204 40 0 0 chr12 81083281 81083306 -40174224 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1 1203 249 163 0 0 chr12 81083484 81083533 -40173997 + A-rich Low_complexity Low_complexity 1 49 0 1 1203 331 226 0 143 chr12 81083537 81083635 -40173895 + MT2B LTR ERVL 155 238 -363 1 1203 605 231 0 0 chr12 81083552 81083652 -40173878 + B1_Mur2 SINE Alu 1 100 -49 1 1203 1292 48 29 97 chr12 81083652 81083858 -40173672 + B2_Mm2 SINE B2 4 195 0 1 1203 346 267 0 32 chr12 81084043 81084136 -40173394 - PB1 SINE Alu 0 127 38 1 1203 475 253 86 37 chr12 81084274 81084465 -40173065 + MIR3 SINE MIR 3 197 -11 1 1203 319 316 89 77 chr12 81085096 81085264 -40172266 - MLT1M LTR MaLR -389 283 114 1 1203 1238 122 112 0 chr12 81085567 81085763 -40171767 + URR1A DNA MER1_type 3 220 -6 1 1203 475 293 0 81 chr12 81086547 81086707 -40170823 + B3A SINE B2 38 184 -14 1 1203 27 0 0 0 chr12 81086845 81086872 -40170658 + AT_rich Low_complexity Low_complexity 1 27 0 1 1203 380 312 0 53 chr12 81086878 81087010 -40170520 + PB1 SINE Alu 1 125 -2 1 1203 276 378 39 39 chr12 81088226 81088460 -40169070 - L3 LINE CR1 -252 4237 4004 1 1203 444 297 109 0 chr12 81088849 81089024 -40168506 - MER20 DNA MER1_type -14 205 12 1 1203 693 198 0 0 chr12 81090310 81090648 -40166882 + (TG)n Simple_repeat Simple_repeat 1 338 0 1 1203 452 62 16 0 chr12 81091246 81091310 -40166220 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1203 204 125 0 0 chr12 81091304 81091336 -40166194 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 1 1203 479 286 95 22 chr12 81092425 81092604 -40164926 + MER3 DNA MER1_type 10 201 -8 1 1203 201 269 23 103 chr12 81092635 81092722 -40164808 + MIRb SINE MIR 52 131 -137 1 1203 294 188 0 0 chr12 81093147 81093185 -40164345 + polypyrimidine Low_complexity Low_complexity 40 77 0 1 1203 1271 62 0 6 chr12 81093185 81093364 -40164166 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 1 1203 294 188 0 0 chr12 81093364 81093394 -40164136 + polypyrimidine Low_complexity Low_complexity 10 39 0 1 1203 780 131 0 17 chr12 81093394 81093572 -40163958 + (TTCTCC)n Simple_repeat Simple_repeat 3 177 0 1 1203 981 96 0 17 chr12 81093592 81093773 -40163757 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 1 1203 231 378 0 0 chr12 81094480 81094562 -40162968 - MIRb SINE MIR -75 193 112 1 1203 286 233 29 130 chr12 81095707 81095845 -40161685 - MER102c DNA MER1_type -201 130 7 1 1203 964 256 66 49 chr12 81097322 81097609 -40159921 + B4A SINE B4 1 292 0 1 1203 477 71 0 0 chr12 81097610 81097680 -40159850 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1203 331 115 19 0 chr12 81097731 81097783 -40159747 + HAL1-3A_ME LINE L1 1975 2027 -831 1 1203 329 236 38 19 chr12 81097794 81097954 -40159576 + (CAAA)n Simple_repeat Simple_repeat 4 166 0 1 1203 291 300 216 49 chr12 81098016 81098405 -40159125 - L3 LINE CR1 -574 3915 3462 1 1203 413 289 18 111 chr12 81098982 81099153 -40158377 + LTR33 LTR ERVL 358 512 -3 1 1203 367 357 64 44 chr12 81099235 81099484 -40158046 + MIR SINE MIR 8 261 -1 1 1203 448 384 80 29 chr12 81101041 81101283 -40156247 + MLT1K LTR MaLR 20 266 -329 1 1203 450 0 0 0 chr12 81101283 81101333 -40156197 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1203 448 384 80 29 chr12 81101333 81101401 -40156129 + MLT1K LTR MaLR 267 345 -250 1 1203 228 114 22 43 chr12 81102197 81102243 -40155287 - L1M2 LINE L1 -491 5800 5756 1 1203 437 255 42 14 chr12 81102243 81102386 -40155144 - B1F1 SINE Alu -1 148 2 2 1203 477 0 0 0 chr12 81103306 81103359 -40154171 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1203 516 16 0 0 chr12 81103359 81103419 -40154111 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1203 1047 183 95 15 chr12 81106292 81106492 -40151038 + B3 SINE B2 1 216 0 2 1203 210 26 50 25 chr12 81107241 81107281 -40150249 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1203 205 179 24 49 chr12 81107396 81107478 -40150052 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1203 219 69 0 0 chr12 81108330 81108359 -40149171 + (TAG)n Simple_repeat Simple_repeat 2 30 0 2 1203 324 342 70 18 chr12 81108457 81108654 -40148876 - MIR SINE MIR -27 241 32 2 1203 704 290 146 37 chr12 81109637 81109959 -40147571 - ORR1E LTR MaLR -2 357 1 2 1203 712 271 0 7 chr12 81110587 81110713 -40146817 + RSINE1 SINE B4 16 140 -25 2 1203 188 86 29 0 chr12 81110713 81110748 -40146782 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1203 712 271 0 7 chr12 81110748 81110766 -40146764 + RSINE1 SINE B4 141 158 -7 2 1203 340 315 59 89 chr12 81110909 81111111 -40146419 + MIRc SINE MIR 58 253 -15 2 1203 714 281 132 67 chr12 81111336 81111782 -40145748 + RLTR11A LTR ERVK 1 475 -53 2 1203 319 307 132 7 chr12 81112140 81112291 -40145239 - MER63D DNA AcHobo -457 604 435 2 1203 440 286 73 63 chr12 81112323 81112528 -40145002 - MER63D DNA AcHobo -599 462 256 2 1203 285 304 0 14 chr12 81112631 81112701 -40144829 - MER63D DNA AcHobo -964 97 29 2 1203 230 241 99 105 chr12 81114095 81114257 -40143273 - ORR1A3-int LTR MaLR -738 1225 1065 2 1203 294 29 0 0 chr12 81114599 81114634 -40142896 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1203 249 108 0 0 chr12 81115032 81115069 -40142461 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1203 254 297 0 15 chr12 81115638 81115703 -40141827 + ID_B1 SINE B4 80 143 -81 2 1203 388 262 0 3 chr12 81115646 81115726 -40141804 + PB1 SINE Alu 15 84 -43 2 1203 225 0 0 0 chr12 81116435 81116460 -40141070 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 2 1203 411 56 0 0 chr12 81116472 81116526 -40141004 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1203 3136 29 8 0 chr12 81116641 81117019 -40140511 + MTA_Mm LTR MaLR 1 381 -15 2 1203 1306 272 88 47 chr12 81119418 81119729 -40137801 - L1MB3 LINE L1 -3 6180 5886 2 1203 189 0 0 0 chr12 81119729 81119750 -40137780 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1203 1306 272 88 47 chr12 81119750 81119971 -40137559 - L1MB3 LINE L1 -298 5885 5628 2 1203 496 212 0 89 chr12 81120047 81120171 -40137359 + PB1D10 SINE Alu 2 114 -3 2 1203 756 228 66 47 chr12 81120204 81120416 -40137114 + ID_B1 SINE B4 1 216 -8 2 1203 244 254 0 16 chr12 81120558 81120622 -40136908 + B2_Mm2 SINE B2 1 63 -132 2 1203 588 53 0 0 chr12 81120643 81120719 -40136811 + (TTGG)n Simple_repeat Simple_repeat 4 79 0 2 1203 532 250 0 0 chr12 81120719 81120819 -40136711 - B1_Mur2 SINE Alu -49 100 1 2 1203 852 159 28 21 chr12 81121069 81121210 -40136320 + B1_Mur2 SINE Alu 2 143 -6 2 1203 654 289 94 23 chr12 81121371 81121636 -40135894 - B4A SINE B4 -8 284 1 2 1203 189 107 0 0 chr12 81121781 81121809 -40135721 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1203 414 0 0 0 chr12 81122394 81122440 -40135090 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1203 216 0 0 0 chr12 81124089 81124113 -40133417 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 2 1203 692 122 28 0 chr12 81125644 81125751 -40131779 - B2_Mm1t SINE B2 -69 124 15 2 1203 947 125 0 0 chr12 81125752 81125888 -40131642 + B1_Mus1 SINE Alu 12 147 -1 2 1203 312 263 53 87 chr12 81127709 81127859 -40129671 + MT2B LTR ERVL 134 278 -323 2 1203 718 192 16 0 chr12 81127755 81127880 -40129650 + B1_Mus1 SINE Alu 17 143 -5 2 1203 836 181 9 5 chr12 81127880 81128107 -40129423 + GA-rich Low_complexity Low_complexity 1 228 0 2 1203 252 0 0 0 chr12 81128899 81128927 -40128603 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1203 711 209 82 38 chr12 81128993 81129177 -40128353 + B3A SINE B2 1 192 -6 2 1203 330 26 0 0 chr12 81129183 81129222 -40128308 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 1203 666 299 108 52 chr12 81129304 81129802 -40127728 - L1ME1 LINE L1 -138 6041 5516 2 1203 525 250 35 0 chr12 81129881 81129997 -40127533 - RSINE1 SINE B4 -16 149 30 2 1203 465 259 171 24 chr12 81130072 81130478 -40127052 - L1ME1 LINE L1 -699 5480 5015 2 1203 3604 151 27 75 chr12 81130607 81130937 -40126593 - RMER6A LTR ERVK -53 703 382 2 1203 783 0 0 0 chr12 81130937 81131024 -40126506 + (TCTCC)n Simple_repeat Simple_repeat 2 88 0 2 1203 3604 151 27 75 chr12 81131024 81131431 -40126099 - RMER6A LTR ERVK -375 381 2 2 1203 221 225 0 9 chr12 81131443 81131555 -40125975 + CT-rich Low_complexity Low_complexity 1 111 0 2 1203 546 288 198 14 chr12 81131622 81131680 -40125850 + B4A SINE B4 3 81 -211 2 1203 528 16 0 0 chr12 81131680 81131741 -40125789 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 2 1203 546 288 198 14 chr12 81131741 81131904 -40125626 + B4A SINE B4 82 264 -28 2 1203 306 0 0 0 chr12 81131905 81131939 -40125591 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1203 321 303 44 35 chr12 81132029 81132142 -40125388 - L1ME1 LINE L1 -1333 4813 4700 2 1204 325 289 105 76 chr12 81134755 81134927 -40122603 - MER20 DNA MER1_type 0 219 43 2 1204 311 246 125 16 chr12 81136751 81136879 -40120651 - MER53 DNA hAT -9 184 43 2 1204 250 285 109 4 chr12 81136958 81137071 -40120459 - ID4 SINE ID -25 127 5 2 1204 768 262 69 5 chr12 81138776 81138979 -40118551 - ID_B1 SINE B4 0 224 9 2 1204 326 231 167 25 chr12 81139356 81139476 -40118054 + MLT1A1 LTR MaLR 268 404 -4 2 1204 541 315 64 53 chr12 81139628 81139910 -40117620 - B4A SINE B4 0 292 8 2 1204 756 214 7 7 chr12 81139959 81140105 -40117425 + B1F SINE Alu 2 147 -2 2 1204 2599 265 85 25 chr12 81140109 81140472 -40117058 + Lx8 LINE L1 6557 6952 -521 2 1204 234 0 0 0 chr12 81140472 81140498 -40117032 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1204 2599 265 85 25 chr12 81140498 81140984 -40116546 + Lx8 LINE L1 6953 7457 -16 2 1204 224 196 0 38 chr12 81141879 81141932 -40115598 + C-rich Low_complexity Low_complexity 4 54 0 2 1204 185 0 0 39 chr12 81142328 81142354 -40115176 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2 1204 246 62 0 0 chr12 81142845 81142877 -40114653 + (GAA)n Simple_repeat Simple_repeat 2 33 0 2 1204 452 269 16 40 chr12 81143142 81143266 -40114264 + RSINE1 SINE B4 35 155 -10 2 1204 275 235 99 30 chr12 81143775 81143876 -40113654 + MIRc SINE MIR 105 212 -56 2 1204 216 0 0 0 chr12 81144288 81144312 -40113218 + (CAG)n Simple_repeat Simple_repeat 2 25 0 2 1204 244 275 0 36 chr12 81145105 81145188 -40112342 + MIR3 SINE MIR 78 157 -51 2 1204 8177 42 11 7 chr12 81145230 81146915 -40110615 - L1Md_F2 LINE L1 0 6582 4893 2 1204 1292 261 106 14 chr12 81146915 81147265 -40110265 - Tigger7 DNA MER2_type -19 2472 2091 2 1204 316 325 60 53 chr12 81147269 81147402 -40110128 - Tigger7 DNA MER2_type -2335 156 23 2 1204 364 259 99 49 chr12 81147688 81147830 -40109700 + MIRc SINE MIR 75 223 -45 2 1204 917 267 37 58 chr12 81148515 81148809 -40108721 + B4A SINE B4 3 290 -2 2 1204 248 260 39 0 chr12 81148826 81148903 -40108627 + GA-rich Low_complexity Low_complexity 5 84 0 2 1204 837 188 20 14 chr12 81148908 81149054 -40108476 + B1_Mus1 SINE Alu 2 148 0 2 1204 479 232 79 14 chr12 81150119 81150259 -40107271 - MLT1B LTR MaLR -4 386 238 2 1204 368 269 57 25 chr12 81150323 81150445 -40107085 - MLT1B LTR MaLR -263 127 2 2 1204 697 188 230 45 chr12 81150542 81150773 -40106757 + Lx7 LINE L1 7299 7576 -120 2 1204 180 0 0 0 chr12 81150773 81150793 -40106737 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 1204 697 188 230 45 chr12 81150793 81150896 -40106634 + Lx7 LINE L1 7577 7694 -2 2 1204 946 142 14 0 chr12 81151132 81151280 -40106250 + B1_Mur4 SINE Alu 1 150 0 2 1204 234 91 0 0 chr12 81151281 81151314 -40106216 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1204 606 210 120 26 chr12 81151327 81151518 -40106012 - L1MB8 LINE L1 -20 6164 5956 2 1204 557 251 0 6 chr12 81151529 81151697 -40105833 + (TA)n Simple_repeat Simple_repeat 1 167 0 2 1204 754 271 45 0 chr12 81151698 81151942 -40105588 - L1MB8 LINE L1 -245 5933 5679 2 1204 2996 3 0 0 chr12 81151942 81152336 -40105194 - L1Md_T LINE L1 0 6582 6255 2 1204 558 224 183 86 chr12 81152346 81152625 -40104905 - L1MB8 LINE L1 -492 5682 5377 2 1204 431 221 182 44 chr12 81152770 81152907 -40104623 - RSINE1 SINE B4 -8 157 2 2 1204 499 310 79 71 chr12 81152923 81153335 -40104195 - L1ME3 LINE L1 -241 5921 5505 2 1204 211 307 53 13 chr12 81153453 81153529 -40104001 - ID2 SINE ID 0 83 5 2 1204 832 120 60 8 chr12 81153864 81153998 -40103532 + B1_Mus1 SINE Alu 8 148 0 2 1204 469 270 118 86 chr12 81153982 81154015 -40103515 + CYRA11_Mm Unknown Y-chromosome 63 101 -516 2 1204 488 304 70 48 chr12 81154015 81154288 -40103242 + B4A SINE B4 2 280 -12 2 1204 469 270 118 86 chr12 81154288 81154347 -40103183 + CYRA11_Mm Unknown Y-chromosome 102 149 -468 2 1204 270 0 0 0 chr12 81154347 81154377 -40103153 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 1204 469 270 118 86 chr12 81154377 81154406 -40103124 + CYRA11_Mm Unknown Y-chromosome 150 194 -423 2 1204 995 124 184 0 chr12 81154406 81154591 -40102939 - URR1B DNA MER1_type 0 225 7 2 1204 455 243 78 0 chr12 81154937 81155040 -40102490 + ID_B1 SINE B4 111 221 -3 2 1204 248 321 201 50 chr12 81155360 81155698 -40101832 - L3 LINE CR1 -1 4488 4100 2 1204 360 308 0 32 chr12 81156252 81156376 -40101154 + (CA)n Simple_repeat Simple_repeat 2 121 0 2 1204 414 0 0 0 chr12 81156395 81156441 -40101089 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1204 2472 41 3 0 chr12 81156769 81157063 -40100467 - L1_Mus1 LINE L1 -4 6563 6269 2 1204 308 276 25 0 chr12 81157149 81157242 -40100288 - PB1D7 SINE Alu -1 119 25 2 1204 241 250 191 31 chr12 81158226 81158387 -40099143 + MIRb SINE MIR 53 233 -35 2 1204 286 305 53 0 chr12 81158852 81158947 -40098583 - PB1 SINE Alu -27 100 1 2 1204 265 265 217 0 chr12 81159072 81159155 -40098375 + PB1D10 SINE Alu 10 110 -7 2 1204 439 215 187 56 chr12 81159176 81159358 -40098172 + B3A SINE B2 10 195 0 2 1204 1229 61 0 0 chr12 81159944 81160091 -40097439 + B1_Mus2 SINE Alu 1 147 0 2 1204 193 342 138 67 chr12 81161405 81161615 -40095915 + MIRc SINE MIR 30 254 -14 2 1204 234 325 97 60 chr12 81161602 81161736 -40095794 + MIRm SINE MIR 30 168 -108 3 1204 363 23 0 0 chr12 81161918 81161962 -40095568 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1204 895 200 109 5 chr12 81162287 81162488 -40095042 - ID_B1 SINE B4 -2 222 1 3 1204 396 59 0 0 chr12 81162490 81162541 -40094989 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1204 432 0 0 0 chr12 81163168 81163216 -40094314 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1204 198 91 0 0 chr12 81165324 81165357 -40092173 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1204 202 298 188 24 chr12 81165570 81165735 -40091795 - MIR SINE MIR 0 262 71 3 1204 621 330 101 58 chr12 81167110 81167525 -40090005 - MLT1G1 LTR MaLR -2 577 145 3 1204 184 30 29 29 chr12 81167683 81167717 -40089813 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1204 283 300 50 10 chr12 81168158 81168259 -40089271 - PB1D10 SINE Alu -12 105 1 3 1204 215 259 68 80 chr12 81168738 81168826 -40088704 - MIR3 SINE MIR -3 205 119 3 1204 590 0 14 0 chr12 81168901 81168971 -40088559 + (GGA)n Simple_repeat Simple_repeat 1 71 0 3 1204 1061 303 37 17 chr12 81169430 81169779 -40087751 + Lx8 LINE L1 6975 7330 -143 3 1204 457 127 0 48 chr12 81169973 81169986 -40087544 - B1_Mus2 SINE Alu -1 146 136 3 1204 410 36 18 0 chr12 81169986 81170042 -40087488 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 3 1204 457 127 0 48 chr12 81170042 81170111 -40087419 - B1_Mus2 SINE Alu -12 135 68 3 1204 797 199 0 7 chr12 81170758 81170900 -40086630 - B1F2 SINE Alu -1 148 8 3 1204 350 254 28 103 chr12 81170785 81170930 -40086600 - MT2B LTR ERVL -323 278 145 3 1204 228 302 99 58 chr12 81171015 81171119 -40086411 + MIRb SINE MIR 117 222 -40 3 1204 427 395 19 23 chr12 81172417 81172681 -40084849 + L1M5 LINE L1 5549 5811 -313 3 1204 354 206 68 0 chr12 81172697 81172770 -40084760 + ID_B1 SINE B4 146 223 -1 3 1204 620 348 34 38 chr12 81172771 81173064 -40084466 + B4A SINE B4 1 292 0 3 1204 382 203 23 15 chr12 81173069 81173199 -40084331 + (CA)n Simple_repeat Simple_repeat 1 131 0 3 1204 595 269 16 169 chr12 81173254 81173565 -40083965 - B4A SINE B4 -11 281 18 3 1204 248 305 184 55 chr12 81173612 81173813 -40083717 + MLT1B LTR MaLR 154 380 -10 3 1204 829 118 104 0 chr12 81173920 81174055 -40083475 + B1_Mur4 SINE Alu 1 149 -1 3 1204 220 176 0 38 chr12 81174055 81174092 -40083438 + polypurine Low_complexity Low_complexity 1 37 0 3 1204 516 56 0 0 chr12 81174092 81174164 -40083366 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1204 220 176 0 38 chr12 81174164 81174179 -40083351 + polypurine Low_complexity Low_complexity 38 51 0 3 1204 262 277 15 15 chr12 81174251 81174317 -40083213 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 3 1204 598 209 84 28 chr12 81174597 81174740 -40082790 - ID_B1 SINE B4 0 224 74 3 1204 946 67 0 72 chr12 81174742 81174936 -40082594 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1204 593 275 95 1 chr12 81174982 81175204 -40082326 - B4 SINE B4 -44 248 2 3 1204 273 398 8 0 chr12 81175513 81175636 -40081894 + MER5B DNA MER1_type 29 152 -26 3 1204 2203 134 78 24 chr12 81175806 81176180 -40081350 + ORR1B1 LTR MaLR 1 394 0 3 1204 264 318 112 0 chr12 81176908 81177015 -40080515 - MIRb SINE MIR -23 245 127 3 1204 329 317 92 3 chr12 81177021 81177148 -40080382 + B4A SINE B4 2 142 -82 3 1204 215 159 22 22 chr12 81177239 81177258 -40080272 + polypurine Low_complexity Low_complexity 4 22 0 3 1204 423 0 0 0 chr12 81177258 81177305 -40080225 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 3 1204 215 159 22 22 chr12 81177305 81177330 -40080200 + polypurine Low_complexity Low_complexity 23 48 0 3 1204 332 281 89 11 chr12 81177364 81177454 -40080076 - MIRb SINE MIR -147 121 25 3 1204 449 308 43 0 chr12 81178351 81178468 -40079062 + RSINE1 SINE B4 38 159 -6 3 1204 540 0 0 0 chr12 81178615 81178675 -40078855 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1204 222 282 101 13 chr12 81178815 81178894 -40078636 - MIRc SINE MIR -116 152 67 3 1204 398 304 35 9 chr12 81178923 81178946 -40078584 + B4 SINE B4 63 88 -204 3 1204 624 174 8 2 chr12 81178946 81179061 -40078469 + B1_Mur4 SINE Alu 1 119 -1 3 1204 752 219 0 0 chr12 81181471 81181608 -40075922 + B1F SINE Alu 1 137 -12 3 1204 494 31 16 0 chr12 81181608 81181672 -40075858 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 3 1204 1153 78 0 0 chr12 81181721 81181863 -40075667 + B1_Mus2 SINE Alu 2 143 -4 3 1204 287 281 0 73 chr12 81181881 81181977 -40075553 + PB1D10 SINE Alu 27 115 -2 3 1204 227 271 0 12 chr12 81181977 81182063 -40075467 + (TAA)n Simple_repeat Simple_repeat 1 85 0 3 1204 1174 191 24 5 chr12 81182247 81182457 -40075073 + B3 SINE B2 1 214 -2 3 1204 188 197 76 76 chr12 81182975 81183041 -40074489 + L2 LINE L2 2542 2607 -812 3 1204 225 171 24 0 chr12 81183769 81183810 -40073720 + GA-rich Low_complexity Low_complexity 1 42 0 3 1204 555 118 10 31 chr12 81186215 81186311 -40071219 + RMER19B LTR ERVK 809 902 0 3 1204 240 311 40 0 chr12 81186373 81186447 -40071083 + MER58B DNA MER1_type 226 302 -39 3 1204 184 323 177 0 chr12 81186650 81186746 -40070784 - L2a LINE L2 -12 3414 3302 3 1204 809 229 219 29 chr12 81186832 81187318 -40070212 + L1MA5 LINE L1 4750 5327 -816 3 1204 748 282 28 11 chr12 81187320 81187499 -40070031 + B3A SINE B2 1 182 -16 3 1204 25 0 0 0 chr12 81187530 81187555 -40069975 + AT_rich Low_complexity Low_complexity 1 25 0 3 1204 827 203 0 0 chr12 81187555 81187693 -40069837 + B1_Mur4 SINE Alu 13 150 0 3 1204 1723 264 62 42 chr12 81187698 81188405 -40069125 + L1MA5 LINE L1 5304 6024 -276 3 1204 405 0 0 0 chr12 81188423 81188468 -40069062 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1204 2152 107 0 33 chr12 81188487 81188816 -40068714 + ORR1A3 LTR MaLR 1 318 -8 3 1204 653 208 250 11 chr12 81188949 81189129 -40068401 + ID_B1 SINE B4 2 224 0 3 1204 232 289 0 0 chr12 81189199 81189251 -40068279 + MLT1I LTR MaLR 92 143 -268 3 1204 790 234 61 5 chr12 81189386 81189584 -40067946 + B3 SINE B2 2 210 -6 3 1204 2650 75 3 0 chr12 81189895 81190229 -40067301 + L1_Mus1 LINE L1 6233 6567 0 3 1204 31 0 0 0 chr12 81190238 81190269 -40067261 + AT_rich Low_complexity Low_complexity 1 31 0 3 1204 465 285 33 46 chr12 81191247 81191398 -40066132 - MIRm SINE MIR -123 153 5 3 1204 387 0 0 0 chr12 81191460 81191503 -40066027 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1204 378 0 0 0 chr12 81191504 81191546 -40065984 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1204 508 237 79 73 chr12 81191832 81191996 -40065534 - MER63D DNA AcHobo -875 186 22 3 1204 279 271 0 28 chr12 81192071 81192143 -40065387 + MIR SINE MIR 76 145 -117 3 1204 1387 253 169 11 chr12 81193664 81194132 -40063398 + MLT1H LTR MaLR 3 544 -5 3 1204 739 313 113 46 chr12 81194225 81194279 -40063251 + LTR16C LTR ERVL 26 74 -415 3 1204 613 246 206 6 chr12 81194279 81194459 -40063071 - B3 SINE B2 0 216 1 3 1204 739 313 113 46 chr12 81194459 81194836 -40062694 + LTR16C LTR ERVL 75 486 -3 3 1204 247 150 0 0 chr12 81195117 81195128 -40062402 + (GA)n Simple_repeat Simple_repeat 2 12 0 3 1204 767 176 20 34 chr12 81195128 81195275 -40062255 + B1_Mus1 SINE Alu 2 146 -2 3 1204 247 150 0 0 chr12 81195275 81195303 -40062227 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1204 643 109 0 26 chr12 81195303 81195416 -40062114 + (GAAAA)n Simple_repeat Simple_repeat 3 112 0 3 1204 228 360 25 75 chr12 81195577 81195736 -40061794 - L2a LINE L2 -3 3423 3273 3 1204 387 268 47 47 chr12 81195773 81195902 -40061628 + MIRb SINE MIR 25 153 -115 3 1204 1033 212 25 20 chr12 81196143 81196345 -40061185 - B3 SINE B2 -6 210 8 3 1204 468 340 0 14 chr12 81196393 81196536 -40060994 - ID_B1 SINE B4 -6 218 78 3 1204 331 250 0 0 chr12 81196798 81196870 -40060660 - ID4 SINE ID -10 73 2 3 1204 1357 209 33 88 chr12 81197764 81198095 -40059435 - MTEb LTR MaLR -3 376 64 3 1204 234 0 0 0 chr12 81198130 81198156 -40059374 + (TCTTG)n Simple_repeat Simple_repeat 2 27 0 3 1204 814 216 0 0 chr12 81198165 81198313 -40059217 - B1F SINE Alu 0 149 2 3 1204 741 246 85 0 chr12 81198736 81198935 -40058595 + MER2 DNA MER2_type 2 217 -128 3 1204 540 30 0 0 chr12 81199032 81199098 -40058432 + (GAAA)n Simple_repeat Simple_repeat 1 66 0 3 1204 325 328 57 8 chr12 81199105 81199228 -40058302 + MER2 DNA MER2_type 211 339 -6 3 1204 730 200 203 11 chr12 81199307 81199494 -40058036 + ID_B1 SINE B4 2 224 0 3 1204 207 100 0 0 chr12 81199519 81199549 -40057981 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1204 774 185 0 82 chr12 81199578 81199737 -40057793 + B1_Mur2 SINE Alu 3 148 -1 3 1204 261 286 96 26 chr12 81199958 81200073 -40057457 - MIRc SINE MIR -8 200 78 3 1204 286 281 252 0 chr12 81200976 81201115 -40056415 - MIR3 SINE MIR -11 197 24 3 1204 1033 133 198 11 chr12 81201826 81202008 -40055522 + B3 SINE B2 1 216 0 3 1204 258 160 0 0 chr12 81203035 81203085 -40054445 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 3 1204 907 201 143 0 chr12 81203146 81203335 -40054195 - B3 SINE B2 0 216 1 3 1204 267 246 0 0 chr12 81203343 81203412 -40054118 - L1ME3 LINE L1 0 6164 6096 3 1204 333 265 115 58 chr12 81203413 81203470 -40054060 - L1ME3 LINE L1 -196 5966 5912 3 1204 540 235 242 38 chr12 81203470 81203656 -40053874 - ID_B1 SINE B4 0 224 1 3 1204 333 265 115 58 chr12 81203656 81203754 -40053776 - L1ME3 LINE L1 -251 5911 5802 3 1204 263 331 22 51 chr12 81203791 81203954 -40053576 - MIRm SINE MIR -45 163 5 3 1204 528 154 11 11 chr12 81204017 81204109 -40053421 + B1_Mur3 SINE Alu 58 149 0 3 1204 477 0 0 0 chr12 81204132 81204185 -40053345 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1204 1331 247 30 113 chr12 81205194 81205601 -40051929 + MTE2a LTR MaLR 1 373 -6 4 1204 536 199 197 8 chr12 81205699 81205831 -40051699 + RSINE1 SINE B4 4 160 -5 4 1204 651 125 0 0 chr12 81205836 81205940 -40051590 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 4 1204 406 220 77 92 chr12 81206040 81206170 -40051360 + B1F2 SINE Alu 17 144 -5 4 1204 428 77 15 0 chr12 81206170 81206235 -40051295 + (GGA)n Simple_repeat Simple_repeat 3 68 0 4 1204 670 106 46 23 chr12 81207004 81207359 -40050171 + (CA)n Simple_repeat Simple_repeat 1 363 0 4 1204 304 116 53 0 chr12 81207390 81207485 -40050045 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 1204 326 50 0 0 chr12 81207488 81207528 -40050002 + HAL1-3A_ME LINE L1 1973 2012 -846 4 1204 188 205 0 49 chr12 81207541 81207582 -40049948 + L4 LINE RTE 205 243 -1786 4 1204 814 142 64 0 chr12 81207898 81208039 -40049491 + B1_Mur4 SINE Alu 1 150 0 4 1204 222 116 0 0 chr12 81208561 81208604 -40048926 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1204 34 24 0 0 chr12 81209188 81209229 -40048301 + AT_rich Low_complexity Low_complexity 1 41 0 4 1204 183 42 0 0 chr12 81210105 81210129 -40047401 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 4 1204 206 243 14 28 chr12 81210486 81210558 -40046972 + G-rich Low_complexity Low_complexity 4 74 0 4 1204 205 88 29 0 chr12 81211949 81211983 -40045547 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 4 1204 476 105 13 0 chr12 81214464 81214540 -40042990 + (TC)n Simple_repeat Simple_repeat 1 77 0 4 1204 27 73 0 0 chr12 81216387 81216442 -40041088 + GC_rich Low_complexity Low_complexity 1 55 0 4 1204 392 171 0 23 chr12 81217342 81217418 -40040112 - PB1 SINE Alu 0 149 58 4 1204 834 176 7 39 chr12 81218039 81218193 -40039337 - B1_Mur2 SINE Alu 0 149 1 4 1204 962 289 110 63 chr12 81218570 81219001 -40038529 - L1ME1 LINE L1 -127 6052 5588 4 1204 519 241 35 0 chr12 81219001 81219117 -40038413 - PB1D9 SINE Alu 0 120 1 4 1204 962 289 110 63 chr12 81219117 81219283 -40038247 - L1ME1 LINE L1 -592 5587 5423 4 1204 589 244 15 8 chr12 81219283 81219415 -40038115 - B1F SINE Alu -12 137 5 4 1204 962 289 110 63 chr12 81219415 81219563 -40037967 - L1ME1 LINE L1 -757 5422 5271 4 1204 188 34 0 33 chr12 81219563 81219593 -40037937 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1204 962 277 49 66 chr12 81219593 81219792 -40037738 - L1ME1 LINE L1 -909 5270 5071 4 1204 432 215 102 9 chr12 81219811 81219919 -40037611 + PB1 SINE Alu 2 119 -8 4 1204 1590 181 47 25 chr12 81220228 81220550 -40036980 - ORR1A4 LTR MaLR 0 329 1 4 1204 337 267 137 0 chr12 81220644 81220775 -40036755 - L1M4 LINE L1 -3852 2294 2146 4 1204 248 143 102 0 chr12 81220848 81220897 -40036633 - ID SINE ID -169 55 2 4 1204 333 235 47 0 chr12 81221003 81221088 -40036442 + B3 SINE B2 119 207 -9 4 1204 219 36 0 0 chr12 81221129 81221157 -40036373 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 4 1204 295 256 33 25 chr12 81221273 81221393 -40036137 - L1ME1 LINE L1 -1386 4760 4640 4 1204 1228 208 68 77 chr12 81221472 81221837 -40035693 - ORR1D2 LTR MaLR -4 366 5 4 1204 234 172 186 17 chr12 81221979 81222038 -40035492 - tRNA-Ala-GCY_ tRNA tRNA -5 70 2 4 1204 324 250 40 50 chr12 81222087 81222188 -40035342 - PB1D10 SINE Alu -4 113 14 4 1204 180 0 0 0 chr12 81222220 81222240 -40035290 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1204 263 200 0 97 chr12 81222368 81222440 -40035090 - L1ME1 LINE L1 -1893 4253 4189 4 1204 235 284 74 0 chr12 81222437 81222532 -40034998 - L1MC LINE L1 -2018 4128 4027 4 1204 304 269 0 29 chr12 81222583 81222652 -40034878 + L2a LINE L2 3359 3425 -1 4 1204 425 32 0 73 chr12 81227105 81227173 -40030357 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 1204 1280 56 12 0 chr12 81227173 81227333 -40030197 - B2_Mm2 SINE B2 -33 162 1 4 1204 2598 59 0 15 chr12 81227967 81228310 -40029220 - ORR1A1 LTR MaLR -8 338 1 4 1204 252 0 0 0 chr12 81228824 81228852 -40028678 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1204 653 243 30 1 chr12 81229127 81229263 -40028267 - RSINE1 SINE B4 -23 142 2 4 1204 236 94 0 0 chr12 81229394 81229426 -40028104 - B1_Mus2 SINE Alu -7 140 109 4 1204 180 0 0 0 chr12 81229450 81229470 -40028060 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1204 182 136 23 0 chr12 81229553 81229597 -40027933 + (TGGG)n Simple_repeat Simple_repeat 4 48 0 4 1204 343 248 99 54 chr12 81230185 81230296 -40027234 - PB1D9 SINE Alu 0 120 5 4 1204 438 20 0 0 chr12 81230538 81230589 -40026941 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1204 197 293 193 12 chr12 81231118 81231201 -40026329 + MIRc SINE MIR 27 124 -144 4 1204 369 0 0 0 chr12 81231771 81231812 -40025718 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 4 1204 1091 116 124 92 chr12 81232225 81232443 -40025087 - URR1B DNA MER1_type 0 225 1 4 1204 914 212 18 65 chr12 81234271 81234488 -40023042 - B3 SINE B2 -9 207 1 4 1204 407 346 49 43 chr12 81234526 81234689 -40022841 - RSINE1 SINE B4 0 165 2 4 1204 363 323 134 8 chr12 81234762 81234896 -40022634 + Tigger5 DNA MER2_type 1 151 -2255 4 1204 450 235 57 29 chr12 81236186 81236326 -40021204 + MIRb SINE MIR 102 245 -23 4 1204 243 234 94 0 chr12 81236445 81236509 -40021021 + MIRb SINE MIR 198 267 -1 4 1204 604 304 84 48 chr12 81237817 81237885 -40019645 - L1MB5 LINE L1 -51 6123 6059 4 1204 324 0 0 0 chr12 81237885 81237921 -40019609 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1204 730 191 30 8 chr12 81237921 81238053 -40019477 - B1_Mur1 SINE Alu -13 136 2 4 1204 604 304 84 48 chr12 81238053 81238315 -40019215 - L1MB5 LINE L1 -116 6058 5781 4 1204 195 42 0 0 chr12 81239182 81239206 -40018324 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 4 1204 262 324 42 0 chr12 81239300 81239371 -40018159 + ID4 SINE ID 8 81 -2 4 1204 212 375 0 23 chr12 81240879 81241010 -40016520 + (TGGG)n Simple_repeat Simple_repeat 2 129 0 4 1204 180 235 188 14 chr12 81241298 81241367 -40016163 + L4 LINE RTE 1060 1140 -889 4 1204 333 0 0 0 chr12 81243051 81243088 -40014442 + (TATG)n Simple_repeat Simple_repeat 3 39 0 4 1204 253 312 34 19 chr12 81243088 81243286 -40014244 + L1M4c LINE L1 1544 1740 -4829 4 1204 1140 96 59 24 chr12 81243601 81243771 -40013759 + B2_Mm2 SINE B2 1 176 -19 4 1204 1793 249 18 16 chr12 81244040 81244477 -40013053 + Lx8 LINE L1 6519 6956 -517 4 1204 440 149 11 0 chr12 81244478 81244572 -40012958 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1204 266 311 10 10 chr12 81244678 81244782 -40012748 + Lx8 LINE L1 7359 7462 -11 4 1204 855 189 0 7 chr12 81245429 81245573 -40011957 - B1_Mur4 SINE Alu -7 143 1 4 1204 554 219 16 48 chr12 81245603 81245728 -40011802 - B1_Mur1 SINE Alu -2 147 27 4 1204 351 0 0 0 chr12 81245734 81245773 -40011757 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1204 377 247 43 12 chr12 81245779 81245943 -40011587 + L1M4c LINE L1 3027 3195 -3187 4 1204 891 178 200 6 chr12 81245952 81246127 -40011403 + B3 SINE B2 2 210 -6 4 1204 301 314 118 82 chr12 81246199 81246504 -40011026 - LTR48B LTR ERV1 -32 612 297 4 1204 381 241 39 17 chr12 81246727 81246885 -40010645 + L1M4c LINE L1 3257 3420 -2962 4 1204 249 222 0 0 chr12 81246895 81246958 -40010572 + GA-rich Low_complexity Low_complexity 3 65 0 4 1204 420 254 17 42 chr12 81246973 81247092 -40010438 + B3 SINE B2 2 117 -99 4 1204 594 0 0 0 chr12 81247513 81247579 -40009951 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1204 459 82 0 0 chr12 81248390 81248463 -40009067 + (TCTCTG)n Simple_repeat Simple_repeat 2 74 0 4 1204 405 0 0 0 chr12 81248465 81248510 -40009020 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1204 229 277 59 69 chr12 81249091 81249192 -40008338 + PB1 SINE Alu 26 125 -2 4 1204 1110 108 46 46 chr12 81249196 81249391 -40008139 + B2_Mm2 SINE B2 1 195 0 4 1204 756 239 7 0 chr12 81249397 81249462 -40008068 + ID SINE ID 16 81 -143 4 1204 384 323 0 10 chr12 81249462 81249559 -40007971 + PB1D10 SINE Alu 1 96 -21 4 1204 1895 163 84 20 chr12 81249691 81250047 -40007483 - MTD LTR MaLR -22 397 19 4 1204 368 255 22 0 chr12 81250089 81250187 -40007343 + MLT1A0 LTR MaLR 257 399 -9 4 1204 1656 26 5 0 chr12 81250818 81251009 -40006521 + B2_Mm1t SINE B2 2 193 0 4 1204 1224 136 93 37 chr12 81251399 81251613 -40005917 - URR1A DNA MER1_type 0 226 1 4 1204 257 307 80 0 chr12 81251879 81251967 -40005563 + MER34 LTR ERV1 376 470 -72 4 1204 444 286 71 108 chr12 81252027 81252239 -40005291 + Charlie1b DNA MER1_type 62 265 -258 4 1204 418 242 124 39 chr12 81252418 81252547 -40004983 - B1F SINE Alu 0 149 10 4 1204 1226 187 19 0 chr12 81252694 81252903 -40004627 - B3 SINE B2 -3 213 1 4 1204 895 174 32 0 chr12 81252951 81253106 -40004424 - B3 SINE B2 -17 199 40 4 1204 234 290 29 14 chr12 81253347 81253417 -40004113 + ID4 SINE ID 5 75 -8 4 1204 301 172 104 45 chr12 81253673 81253740 -40003790 - ID4 SINE ID -2 81 11 4 1204 1665 21 5 0 chr12 81253792 81253982 -40003548 + B2_Mm1t SINE B2 2 192 -1 4 1204 323 282 13 0 chr12 81253995 81254073 -40003457 + ID4 SINE ID 3 81 -2 4 1204 856 254 34 5 chr12 81254152 81254349 -40003181 + B3 SINE B2 1 204 -12 4 1204 1137 128 0 0 chr12 81254349 81254529 -40003001 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1204 489 110 0 0 chr12 81254540 81254613 -40002917 + (GAAA)n Simple_repeat Simple_repeat 4 76 0 4 1204 347 330 0 34 chr12 81254633 81254752 -40002778 + RSINE1 SINE B4 4 118 -47 4 1204 222 37 0 0 chr12 81254762 81254789 -40002741 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 1204 252 0 0 0 chr12 81254789 81254816 -40002714 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1204 942 126 0 22 chr12 81254901 81254913 -40002617 - B1_Mur4 SINE Alu 0 150 139 4 1204 252 59 0 0 chr12 81254913 81254947 -40002583 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1204 942 126 0 22 chr12 81254947 81255072 -40002458 - B1_Mur4 SINE Alu -12 138 16 4 1204 388 230 141 51 chr12 81255133 81255289 -40002241 + LTR48 LTR ERV1 16 185 -602 5 1204 333 325 79 94 chr12 81255482 81255811 -40001719 + ORR1E LTR MaLR 24 347 -12 5 1204 182 37 0 36 chr12 81256054 81256082 -40001448 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1204 720 119 89 41 chr12 81256082 81256205 -40001325 - B1_Mur4 SINE Alu -10 140 12 5 1204 309 247 88 88 chr12 81256122 81256224 -40001306 - MT2B LTR ERVL -344 257 156 5 1204 708 12 0 0 chr12 81256526 81256607 -40000923 + (GA)n Simple_repeat Simple_repeat 1 81 0 5 1204 441 0 0 0 chr12 81256702 81256751 -40000779 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1204 315 0 0 0 chr12 81256751 81256785 -40000745 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1204 1027 208 9 24 chr12 81257620 81257832 -39999698 + B3 SINE B2 5 213 -3 5 1204 807 164 0 50 chr12 81257834 81257975 -39999555 - B1_Mus1 SINE Alu -13 135 2 5 1204 1060 137 57 6 chr12 81258007 81258169 -39999361 + B2_Mm2 SINE B2 1 171 -24 5 1204 189 0 0 0 chr12 81258169 81258190 -39999340 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1204 1060 137 57 6 chr12 81258190 81258203 -39999327 + B2_Mm2 SINE B2 172 184 -11 5 1204 871 191 14 0 chr12 81258529 81258676 -39998854 + B1_Mur2 SINE Alu 1 149 0 5 1204 514 248 0 40 chr12 81259009 81259135 -39998395 - B1F1 SINE Alu -2 147 27 5 1204 312 304 189 10 chr12 81260431 81260627 -39996903 + MLT1K LTR MaLR 331 561 -34 5 1204 990 138 153 5 chr12 81260971 81261167 -39996363 + URR1B DNA MER1_type 1 225 0 5 1204 1563 38 0 36 chr12 81261700 81261894 -39995636 + B2_Mm1a SINE B2 3 189 -4 5 1204 280 236 78 134 chr12 81261927 81262069 -39995461 - RLTR41 LTR ERV1 -62 384 251 5 1204 254 256 12 93 chr12 81262920 81263006 -39994524 - PB1D10 SINE Alu -38 79 1 5 1204 211 273 14 57 chr12 81262944 81263014 -39994516 - B4A SINE B4 -148 144 78 5 1204 421 255 0 58 chr12 81263046 81263150 -39994380 - PB1D10 SINE Alu -9 108 11 5 1204 584 284 14 0 chr12 81263315 81263456 -39994074 + ID_B1 SINE B4 81 223 -1 5 1204 822 222 100 5 chr12 81263518 81263708 -39993822 + B3 SINE B2 1 208 -8 5 1204 285 176 165 0 chr12 81263709 81263794 -39993736 - Lx4B LINE L1 -5 7053 6955 5 1204 400 154 308 0 chr12 81263859 81263950 -39993580 - B1_Mur2 SINE Alu 0 149 31 5 1204 267 31 0 0 chr12 81263974 81264006 -39993524 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 5 1204 907 147 0 14 chr12 81264006 81264144 -39993386 - B1_Mus1 SINE Alu -12 136 1 5 1204 306 236 13 40 chr12 81264187 81264262 -39993268 + ID_B1 SINE B4 143 215 -9 5 1204 239 208 57 0 chr12 81264216 81264269 -39993261 + B1F SINE Alu 92 147 -2 5 1205 280 144 143 26 chr12 81264980 81265074 -39992456 - B2_Mm2 SINE B2 -1 194 67 5 1205 1368 80 40 0 chr12 81265108 81265284 -39992246 - B2_Mm2 SINE B2 -11 184 2 5 1205 272 292 76 42 chr12 81265398 81265516 -39992014 + ORR1E LTR MaLR 1 122 -237 5 1205 255 267 25 51 chr12 81266710 81266789 -39990741 + BC1_Mm scRNA scRNA 7 83 0 5 1205 559 175 41 0 chr12 81266921 81267018 -39990512 + RSINE1 SINE B4 26 126 -39 5 1205 21 0 0 0 chr12 81267067 81267088 -39990442 + AT_rich Low_complexity Low_complexity 1 21 0 5 1205 527 250 95 7 chr12 81267578 81267715 -39989815 - RSINE1 SINE B4 -5 160 12 5 1205 245 281 15 30 chr12 81268127 81268193 -39989337 - ID4_ SINE ID -3 80 16 5 1205 25 31 0 0 chr12 81269004 81269036 -39988494 + AT_rich Low_complexity Low_complexity 1 32 0 5 1205 232 250 0 0 chr12 81269040 81269108 -39988422 + T-rich Low_complexity Low_complexity 1 68 0 5 1205 201 247 48 24 chr12 81269225 81269308 -39988222 + G-rich Low_complexity Low_complexity 4 88 0 5 1205 657 254 149 23 chr12 81270260 81270474 -39987056 - MIR SINE MIR -5 257 17 5 1205 211 288 76 0 chr12 81270481 81270547 -39986983 - MIRb SINE MIR -33 235 165 5 1205 1149 197 19 0 chr12 81272962 81273170 -39984360 + B3 SINE B2 1 212 -4 5 1205 189 0 0 0 chr12 81273310 81273331 -39984199 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1205 225 290 52 78 chr12 81275925 81276041 -39981489 - PB1D9 SINE Alu -32 117 5 5 1205 702 273 7 0 chr12 81275986 81276125 -39981405 - ID_B1 SINE B4 -84 140 1 5 1205 1521 63 0 16 chr12 81276424 81276616 -39980914 + B2_Mm1t SINE B2 1 189 -4 5 1205 248 0 31 0 chr12 81276625 81276657 -39980873 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1205 612 242 0 50 chr12 81276690 81276829 -39980701 + B1_Mur1 SINE Alu 3 134 -15 5 1205 775 238 119 0 chr12 81276837 81277030 -39980500 + B3 SINE B2 1 216 0 5 1205 2517 149 156 35 chr12 81277547 81278055 -39979475 + RMER4B LTR ERVK 17 585 0 5 1205 760 182 7 45 chr12 81278592 81278747 -39978783 + B1F SINE Alu 1 149 0 5 1205 381 224 54 108 chr12 81278786 81278916 -39978614 + RSINE1 SINE B4 43 165 0 5 1205 199 106 0 60 chr12 81279442 81279492 -39978038 + G-rich Low_complexity Low_complexity 2 48 0 5 1205 195 42 0 0 chr12 81279811 81279835 -39977695 + (CAAAC)n Simple_repeat Simple_repeat 5 28 0 5 1205 785 294 143 3 chr12 81280419 81280713 -39976817 - MER2 DNA MER2_type 0 345 11 5 1205 592 161 29 159 chr12 81280880 81281050 -39976480 + B1_Mur1 SINE Alu 2 149 0 5 1205 1216 75 6 22 chr12 81281077 81281234 -39976296 + B2_Mm1a SINE B2 2 158 -35 5 1205 468 0 0 0 chr12 81281234 81281286 -39976244 + (TAA)n Simple_repeat Simple_repeat 3 54 0 5 1205 1216 75 6 22 chr12 81281286 81281306 -39976224 + B2_Mm1a SINE B2 159 176 -17 5 1205 1087 126 23 100 chr12 81281597 81281817 -39975713 - URR1B DNA MER1_type -22 203 1 5 1205 293 305 42 0 chr12 81282112 81282207 -39975323 - MIR SINE MIR -72 190 92 5 1205 216 192 0 19 chr12 81282280 81282333 -39975197 + G-rich Low_complexity Low_complexity 4 55 0 5 1205 460 248 9 18 chr12 81283420 81283531 -39973999 - PB1D7 SINE Alu 0 120 11 5 1205 282 253 65 11 chr12 81283457 81283549 -39973981 - B4A SINE B4 -125 167 71 5 1205 555 255 7 33 chr12 81283618 81283768 -39973762 + ID_B1 SINE B4 79 224 0 5 1205 239 300 0 0 chr12 81283773 81283833 -39973697 + ID4 SINE ID 1 60 -23 5 1205 244 369 35 7 chr12 81285063 81285205 -39972325 - MIR SINE MIR -81 181 36 5 1205 227 255 55 73 chr12 81286230 81286340 -39971190 - MLT2B4 LTR ERVL -154 402 295 5 1205 211 125 0 24 chr12 81286630 81286671 -39970859 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 5 1205 739 167 27 20 chr12 81286671 81286818 -39970712 - B1_Mur2 SINE Alu 0 149 2 5 1205 347 188 48 48 chr12 81287703 81287787 -39969743 - PB1D10 SINE Alu -58 91 8 5 1205 733 141 5 9 chr12 81287917 81288058 -39969472 - B1_Mus1 SINE Alu -11 138 1 5 1205 439 215 17 86 chr12 81287955 81288072 -39969458 - MT2B LTR ERVL -344 257 149 5 1205 685 169 27 40 chr12 81289026 81289174 -39968356 - B1_Mur3 SINE Alu -2 147 2 5 1205 258 136 0 0 chr12 81290794 81290838 -39966692 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1205 356 214 14 0 chr12 81291415 81291485 -39966045 + ID4_ SINE ID 4 74 -9 5 1205 953 129 7 7 chr12 81291506 81291654 -39965876 + B1_Mus1 SINE Alu 1 148 0 5 1205 240 241 0 0 chr12 81291654 81291753 -39965777 + A-rich Low_complexity Low_complexity 9 107 0 5 1205 456 232 25 59 chr12 81293864 81293983 -39963547 - PB1D10 SINE Alu 0 117 3 5 1205 396 0 0 0 chr12 81294779 81294823 -39962707 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1205 260 211 0 0 chr12 81295350 81295402 -39962128 + L1M3 LINE L1 5550 5601 -570 5 1205 1655 224 43 61 chr12 81295403 81295796 -39961734 + Lx9 LINE L1 7089 7478 -166 5 1205 288 0 0 0 chr12 81295796 81295828 -39961702 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1205 1655 224 43 61 chr12 81295828 81295995 -39961535 + Lx9 LINE L1 7479 7639 -5 5 1205 279 294 63 42 chr12 81296000 81296142 -39961388 + L1M3 LINE L1 5593 5737 -434 5 1205 451 192 56 47 chr12 81296822 81296947 -39960583 + PB1 SINE Alu 8 117 0 5 1205 1178 41 0 0 chr12 81298681 81298826 -39958704 + B1_Mus2 SINE Alu 3 147 0 5 1205 240 35 0 0 chr12 81298826 81298855 -39958675 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1205 608 186 7 44 chr12 81298913 81299048 -39958482 + B1_Mur1 SINE Alu 1 130 -19 5 1205 579 232 143 17 chr12 81299065 81299257 -39958273 + B3A SINE B2 1 210 -6 5 1205 820 231 35 20 chr12 81299264 81299467 -39958063 + B3 SINE B2 1 206 -10 5 1205 205 210 0 31 chr12 81300695 81300759 -39956771 + CT-rich Low_complexity Low_complexity 3 64 0 5 1205 1126 141 75 10 chr12 81300799 81300999 -39956531 + B3 SINE B2 3 215 -1 5 1205 343 198 86 0 chr12 81301434 81301515 -39956015 - PB1D10 SINE Alu -25 92 5 5 1205 1174 171 23 28 chr12 81301557 81301774 -39955756 + URR1A DNA MER1_type 11 226 0 5 1205 474 18 0 0 chr12 81302380 81302435 -39955095 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 5 1205 216 0 0 0 chr12 81302544 81302568 -39954962 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 1205 260 357 89 14 chr12 81304169 81304382 -39953148 + MER102c DNA MER1_type 96 324 -7 5 1205 248 379 23 34 chr12 81304695 81304870 -39952660 - MER58A DNA MER1_type -1 223 51 5 1205 878 146 0 34 chr12 81305508 81305657 -39951873 + B1_Mur2 SINE Alu 5 148 -1 5 1205 414 0 0 0 chr12 81306268 81306314 -39951216 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1205 610 249 48 12 chr12 81306330 81306497 -39951033 - B3A SINE B2 -18 180 8 5 1205 184 167 42 0 chr12 81306604 81306652 -39950878 + GA-rich Low_complexity Low_complexity 3 52 0 6 1205 877 282 180 18 chr12 81306939 81307394 -39950136 + MTE-int LTR MaLR 67 595 -985 6 1205 1795 173 60 6 chr12 81307440 81307788 -39949742 + RMER5 LTR ERV1 142 508 -26 6 1205 2043 273 168 34 chr12 81308050 81308535 -39948995 + MTE-int LTR MaLR 714 1243 -337 6 1205 996 58 56 35 chr12 81308535 81308548 -39948982 - B1_Mm SINE Alu 0 147 139 6 1205 252 0 0 0 chr12 81308548 81308576 -39948954 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1205 996 58 56 35 chr12 81308576 81308706 -39948824 - B1_Mm SINE Alu -9 138 1 6 1205 2043 273 168 34 chr12 81308706 81308982 -39948548 + MTE-int LTR MaLR 1244 1577 -3 6 1205 286 244 44 13 chr12 81308984 81309079 -39948451 + MLT2B3 LTR ERVL 1 90 -627 6 1205 412 190 0 12 chr12 81310203 81310288 -39947242 - B3 SINE B2 0 216 133 6 1205 598 255 151 23 chr12 81310711 81311054 -39946476 + RMER17C-int LTR ERVK 2852 3238 0 6 1205 240 35 0 0 chr12 81311632 81311661 -39945869 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1205 723 53 0 0 chr12 81311661 81311755 -39945775 - B1_Mm SINE Alu -10 137 44 6 1205 292 139 93 40 chr12 81311694 81311769 -39945761 - RLTR25B LTR ERVK -519 509 431 6 1205 180 0 0 0 chr12 81312396 81312416 -39945114 + (CCA)n Simple_repeat Simple_repeat 3 22 0 6 1205 792 32 0 0 chr12 81312459 81312554 -39944976 + (TC)n Simple_repeat Simple_repeat 1 95 0 6 1205 242 279 71 60 chr12 81314100 81314118 -39943412 + B4 SINE B4 70 148 -144 6 1205 734 152 61 0 chr12 81314118 81314250 -39943280 + B1_Mur2 SINE Alu 8 147 -2 6 1205 242 279 71 60 chr12 81314250 81314268 -39943262 + B4 SINE B4 149 239 -53 6 1205 242 269 38 13 chr12 81314394 81314473 -39943057 - MIR3 SINE MIR -41 167 87 6 1205 181 328 0 0 chr12 81314967 81315025 -39942505 + MIR SINE MIR 87 144 -64 6 1205 534 31 0 0 chr12 81315641 81315705 -39941825 + (GGAAA)n Simple_repeat Simple_repeat 5 68 0 6 1205 244 268 0 35 chr12 81315705 81315763 -39941767 - Charlie8 DNA MER1_type -2294 134 79 6 1205 219 103 0 0 chr12 81315802 81315841 -39941689 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1205 1177 229 144 22 chr12 81316215 81316576 -39940954 + MTD LTR MaLR 1 405 -14 6 1205 1387 58 20 26 chr12 81316795 81316990 -39940540 + B2_Mm2 SINE B2 1 194 -1 6 1205 236 310 0 123 chr12 81317954 81318068 -39939462 + MT2B2 LTR ERVL 156 255 -329 6 1205 463 269 0 9 chr12 81317977 81318086 -39939444 + PB1D10 SINE Alu 10 117 0 6 1205 368 263 104 9 chr12 81318481 81318596 -39938934 + ID_B1 SINE B4 92 217 -7 6 1205 735 141 56 14 chr12 81318631 81318775 -39938755 + B1_Mur4 SINE Alu 1 150 0 6 1205 324 285 78 28 chr12 81319820 81319961 -39937569 + MIRb SINE MIR 107 254 -14 6 1205 201 427 45 0 chr12 81320461 81320571 -39936959 + MIRb SINE MIR 71 185 -83 6 1205 324 0 0 0 chr12 81320595 81320631 -39936899 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1205 417 174 0 44 chr12 81320687 81320777 -39936753 + PB1D10 SINE Alu 30 115 -2 6 1205 633 140 0 9 chr12 81320801 81320909 -39936621 + B1_Mur1 SINE Alu 36 142 -7 6 1205 390 167 68 45 chr12 81321876 81321964 -39935566 - ID_B1 SINE B4 -3 221 132 6 1205 194 333 166 6 chr12 81322569 81322738 -39934792 + MIRb SINE MIR 26 221 -47 6 1205 602 180 83 30 chr12 81323255 81323387 -39934143 + B1_Mm SINE Alu 9 147 0 6 1205 205 194 0 0 chr12 81324793 81324829 -39932701 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 6 1205 224 250 18 0 chr12 81326406 81326462 -39931068 + MER5A DNA MER1_type 101 157 -32 6 1205 246 406 8 8 chr12 81326591 81326720 -39930810 - MIRb SINE MIR -24 244 116 6 1205 371 253 32 0 chr12 81326754 81326849 -39930681 + B4 SINE B4 64 161 -131 6 1205 244 286 0 14 chr12 81327650 81327721 -39929809 - MIR SINE MIR -94 168 99 6 1205 487 306 81 6 chr12 81327836 81328010 -39929520 + Tigger5 DNA MER2_type 21 207 -2199 6 1205 600 254 78 11 chr12 81328041 81328220 -39929310 + B3A SINE B2 2 192 -6 6 1205 593 250 0 0 chr12 81328224 81328348 -39929182 + B3A SINE B2 2 125 -73 6 1205 306 0 0 0 chr12 81328373 81328407 -39929123 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1205 1283 101 21 0 chr12 81328435 81328624 -39928906 + B2_Mm2 SINE B2 2 194 -1 6 1205 356 240 29 48 chr12 81328687 81328792 -39928738 + Tigger5 DNA MER2_type 2303 2405 -1 6 1205 637 279 84 0 chr12 81329698 81329924 -39927606 + L1MB3 LINE L1 5690 5934 -249 6 1205 227 203 69 42 chr12 81330450 81330522 -39927008 + MIR3 SINE MIR 112 185 -23 6 1205 242 333 50 36 chr12 81330910 81331050 -39926480 + MIR3 SINE MIR 15 156 -52 6 1205 525 331 42 15 chr12 81334226 81334410 -39923120 - B3A SINE B2 -1 215 26 6 1205 4109 161 41 16 chr12 81334421 81334484 -39923046 - RMER1A Other Other -10 1020 963 6 1205 3436 126 59 69 chr12 81334484 81335177 -39922353 + RMER6C LTR ERVK 1 686 -4 6 1205 4109 164 36 14 chr12 81335177 81335971 -39921559 - RMER1A Other Other -68 962 4 6 1205 902 137 278 28 chr12 81336001 81336181 -39921349 - URR1B DNA MER1_type 0 225 1 6 1205 660 97 0 21 chr12 81336895 81336990 -39920540 + B1_Mus2 SINE Alu 49 141 -6 6 1205 1069 207 120 12 chr12 81337118 81337377 -39920153 + MTD LTR MaLR 1 287 -132 6 1205 210 37 0 0 chr12 81337435 81337462 -39920068 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 6 1205 264 424 13 0 chr12 81337958 81338116 -39919414 + L4 LINE RTE 1462 1621 -408 6 1205 360 0 0 0 chr12 81338436 81338476 -39919054 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1205 692 208 0 16 chr12 81338531 81338653 -39918877 + PB1D9 SINE Alu 1 120 0 6 1205 250 200 200 0 chr12 81338668 81338723 -39918807 + B3A SINE B2 3 68 -130 6 1205 417 128 2 6 chr12 81338727 81338797 -39918733 - B3A SINE B2 -120 73 6 6 1205 594 211 0 27 chr12 81338805 81338917 -39918613 - RSINE1 SINE B4 -46 119 11 6 1205 406 228 16 12 chr12 81338950 81339044 -39918486 - PB1D10 SINE Alu -9 108 13 6 1205 490 263 82 15 chr12 81339097 81339232 -39918298 - B3A SINE B2 -38 160 17 6 1205 393 39 0 0 chr12 81339232 81339283 -39918247 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 1205 485 252 39 16 chr12 81341256 81341385 -39916145 - B1F1 SINE Alu -13 136 5 6 1205 297 0 0 0 chr12 81341405 81341438 -39916092 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1205 231 305 0 0 chr12 81341439 81341498 -39916032 - ID4 SINE ID -23 60 2 6 1205 277 324 59 72 chr12 81341839 81341905 -39915625 + MT2B LTR ERVL 97 160 -441 6 1205 426 175 28 15 chr12 81341905 81341994 -39915536 + B1_Mur4 SINE Alu 2 98 -22 6 1205 693 229 14 48 chr12 81342003 81342150 -39915380 + RSINE1 SINE B4 3 144 -21 6 1205 283 292 110 60 chr12 81342150 81342185 -39915345 + B2_Mm2 SINE B2 2 192 -3 6 1205 262 325 129 8 chr12 81343058 81343182 -39914348 + B1F SINE Alu 2 140 -9 6 1205 222 37 0 0 chr12 81343182 81343209 -39914321 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1205 394 232 101 18 chr12 81343209 81343350 -39914180 + MIRb SINE MIR 16 176 -32 6 1205 890 269 25 0 chr12 81343701 81343898 -39913632 + ID_B1 SINE B4 2 203 -21 6 1205 767 250 20 25 chr12 81346190 81346387 -39911143 + B3A SINE B2 3 198 0 6 1205 446 251 33 85 chr12 81346404 81346436 -39911094 + ID_B1 SINE B4 67 153 -139 6 1205 734 178 15 15 chr12 81346436 81346573 -39910957 + B1_Mur2 SINE Alu 12 148 -1 6 1205 446 251 33 85 chr12 81346573 81346608 -39910922 + ID_B1 SINE B4 154 256 -36 6 1205 2303 138 42 16 chr12 81347001 81347384 -39910146 + ORR1B1 LTR MaLR 1 393 -1 6 1205 639 289 75 0 chr12 81348522 81348681 -39908849 + ID_B1 SINE B4 49 219 -5 6 1205 246 81 0 0 chr12 81348686 81348723 -39908807 + (CATA)n Simple_repeat Simple_repeat 2 38 0 6 1205 413 19 0 18 chr12 81348734 81348789 -39908741 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1205 822 170 28 28 chr12 81349124 81349310 -39908220 - B3 SINE B2 -4 191 6 6 1205 792 124 71 21 chr12 81349978 81350104 -39907426 + B1_Mus1 SINE Alu 1 135 -13 6 1205 288 0 0 0 chr12 81350104 81350136 -39907394 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 6 1205 792 124 71 21 chr12 81350136 81350149 -39907381 + B1_Mus1 SINE Alu 136 147 -1 6 1205 529 302 93 0 chr12 81350273 81350412 -39907118 - RSINE1 SINE B4 -12 153 2 6 1205 641 218 20 72 chr12 81351400 81351553 -39905977 + B1F SINE Alu 5 149 0 6 1205 272 240 25 51 chr12 81352176 81352255 -39905275 + MIRc SINE MIR 75 151 -117 6 1205 377 290 101 20 chr12 81352453 81352601 -39904929 + MIR SINE MIR 12 171 -91 6 1205 204 40 0 0 chr12 81353599 81353624 -39903906 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 6 1205 429 250 0 24 chr12 81353776 81353903 -39903627 - L1MB7 LINE L1 -16 6168 6045 6 1205 266 169 136 0 chr12 81354248 81354307 -39903223 - B1F1 SINE Alu -2 147 81 6 1205 657 250 118 16 chr12 81354596 81354783 -39902747 + ID_B1 SINE B4 1 206 -18 6 1205 1358 73 39 0 chr12 81355526 81355704 -39901826 + B2_Mm2 SINE B2 3 187 -8 6 1205 212 176 231 19 chr12 81355831 81355883 -39901647 - B1F SINE Alu -11 138 76 6 1205 846 147 258 0 chr12 81356546 81356709 -39900821 + B3 SINE B2 1 205 -11 6 1205 276 30 0 0 chr12 81356709 81356742 -39900788 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1205 233 266 200 9 chr12 81356750 81356860 -39900670 - MIRb SINE MIR -121 147 11 6 1205 366 110 4 37 chr12 81357185 81357299 -39900231 - B2_Mm2 SINE B2 -1 194 47 6 1205 1128 92 92 0 chr12 81357331 81357494 -39900036 - B2_Mm1t SINE B2 -14 179 2 6 1205 204 392 0 0 chr12 81357627 81357701 -39899829 + L2b LINE L2 3277 3350 -25 6 1205 744 283 44 29 chr12 81357737 81357941 -39899589 + B4A SINE B4 2 208 -84 7 1205 506 186 9 29 chr12 81358018 81358123 -39899407 + B1_Mur1 SINE Alu 41 143 -6 7 1205 470 267 34 96 chr12 81358123 81358196 -39899334 + B4A SINE B4 126 292 0 7 1205 236 291 37 25 chr12 81358215 81358296 -39899234 - MIR SINE MIR -93 115 34 7 1205 784 196 199 17 chr12 81359125 81359301 -39898229 + B3 SINE B2 5 212 -4 7 1205 419 63 16 0 chr12 81361166 81361229 -39896301 + (GGCTG)n Simple_repeat Simple_repeat 2 65 0 7 1205 384 319 40 40 chr12 81362627 81362777 -39894753 - MER2B DNA MER2_type 0 336 187 7 1205 809 154 0 37 chr12 81362796 81362931 -39894599 + B3 SINE B2 1 130 -86 7 1205 193 346 129 53 chr12 81363503 81363805 -39893725 - L2a LINE L2 -2 3424 3049 7 1205 228 264 34 102 chr12 81364186 81364273 -39893257 + MT2B2 LTR ERVL 178 256 -328 7 1205 489 171 0 0 chr12 81364273 81364349 -39893181 + B1_Mus1 SINE Alu 1 76 -72 7 1205 343 281 21 10 chr12 81364371 81364468 -39893062 + MER20 DNA MER1_type 96 193 -26 7 1205 329 330 161 13 chr12 81364554 81364790 -39892740 - L2a LINE L2 -933 2486 2216 7 1205 232 342 55 0 chr12 81364801 81364874 -39892656 + ID4 SINE ID 6 82 -1 7 1205 202 200 0 0 chr12 81364874 81364909 -39892621 + GA-rich Low_complexity Low_complexity 2 36 0 7 1205 526 209 84 14 chr12 81365128 81365268 -39892262 + B1_Mus2 SINE Alu 7 149 0 7 1205 1125 64 43 0 chr12 81365852 81365993 -39891537 + B1_Mus1 SINE Alu 2 148 0 7 1205 1374 83 10 45 chr12 81366029 81366230 -39891300 + B2_Mm2 SINE B2 2 195 0 7 1205 852 137 0 0 chr12 81366297 81366436 -39891094 + (TTC)n Simple_repeat Simple_repeat 3 141 0 7 1205 427 225 101 0 chr12 81366447 81366536 -39890994 - B1_Mur2 SINE Alu -51 98 1 7 1205 314 246 0 0 chr12 81366538 81366603 -39890927 - ID_B1 SINE B4 -17 207 143 7 1205 1244 104 35 0 chr12 81366655 81366828 -39890702 + B2_Mm1t SINE B2 1 179 -14 7 1205 330 123 313 17 chr12 81366880 81366995 -39890535 + B2_Mm2 SINE B2 47 195 0 7 1205 228 305 17 0 chr12 81366993 81367052 -39890478 - ID SINE ID -163 61 2 7 1205 360 0 0 0 chr12 81367065 81367105 -39890425 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1205 749 304 27 1 chr12 81367163 81367439 -39890091 - L1M5 LINE L1 -445 5728 5435 7 1205 207 114 0 0 chr12 81367562 81367597 -39889933 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 7 1205 1002 261 97 11 chr12 81367653 81367920 -39889610 + B4A SINE B4 1 290 -2 7 1205 296 242 0 10 chr12 81367923 81368019 -39889511 + (CA)n Simple_repeat Simple_repeat 2 96 0 7 1205 364 296 9 36 chr12 81368033 81368145 -39889385 + PB1D10 SINE Alu 9 117 0 7 1205 734 262 0 7 chr12 81368370 81368520 -39889010 - B1_Mur1 SINE Alu 0 149 1 7 1205 286 328 86 0 chr12 81368558 81368674 -39888856 + PB1 SINE Alu 2 127 0 7 1205 295 242 15 0 chr12 81368691 81368757 -39888773 + ID4_ SINE ID 2 68 -15 7 1205 356 250 25 0 chr12 81369459 81369539 -39887991 - ID2 SINE ID 0 83 2 7 1205 1337 105 16 5 chr12 81369905 81370096 -39887434 - B2_Mm2 SINE B2 -2 193 1 7 1205 590 206 27 93 chr12 81370104 81370213 -39887317 - ID_B1 SINE B4 -2 222 118 7 1205 1052 198 19 24 chr12 81370213 81370425 -39887105 - B3 SINE B2 -5 211 1 7 1205 590 206 27 93 chr12 81370425 81370465 -39887065 - ID_B1 SINE B4 -107 117 83 7 1205 1478 244 70 26 chr12 81370819 81371206 -39886324 + MTD LTR MaLR 2 405 -14 7 1205 202 288 54 14 chr12 81372264 81372338 -39885192 - L2 LINE L2 -3257 162 86 7 1205 211 227 26 13 chr12 81372570 81372646 -39884884 + CT-rich Low_complexity Low_complexity 4 80 0 7 1205 207 0 0 0 chr12 81372646 81372669 -39884861 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1205 277 246 22 33 chr12 81372682 81372772 -39884758 - B1F SINE Alu -13 107 25 7 1205 363 319 94 0 chr12 81373312 81373450 -39884080 - L2a LINE L2 -6 3420 3270 7 1205 861 158 30 17 chr12 81373556 81373737 -39883793 + B3 SINE B2 2 186 -9 7 1205 299 274 39 19 chr12 81373744 81373848 -39883682 + B3A SINE B2 6 111 -87 7 1205 385 255 17 117 chr12 81373792 81373818 -39883712 - B4 SINE B4 -102 190 86 7 1205 529 231 0 0 chr12 81373818 81373909 -39883621 - B1F SINE Alu -58 91 1 7 1205 426 267 111 30 chr12 81373983 81374118 -39883412 + B4A SINE B4 89 234 -58 7 1205 265 308 162 0 chr12 81374392 81374509 -39883021 + MLT1K LTR MaLR 4 139 -456 7 1205 186 43 0 0 chr12 81374695 81374718 -39882812 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1205 207 88 0 0 chr12 81374815 81374849 -39882681 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1205 1284 34 0 0 chr12 81374853 81375000 -39882530 - B1_Mus2 SINE Alu 0 147 1 7 1205 627 14 0 0 chr12 81375054 81375126 -39882404 + (TC)n Simple_repeat Simple_repeat 1 72 0 7 1205 237 290 0 0 chr12 81375163 81375225 -39882305 - B4A SINE B4 -146 146 85 7 1205 434 314 63 21 chr12 81375442 81375639 -39881891 - MLT1F1 LTR MaLR -263 316 111 7 1205 375 157 34 0 chr12 81375803 81375892 -39881638 + CT-rich Low_complexity Low_complexity 1 92 0 7 1205 856 148 14 27 chr12 81375901 81376047 -39881483 - B1_Mur4 SINE Alu -6 144 1 7 1205 645 164 0 0 chr12 81376112 81376228 -39881302 + GA-rich Low_complexity Low_complexity 1 116 0 7 1205 210 308 78 131 chr12 81376722 81376750 -39880780 + B4 SINE B4 74 218 -74 7 1205 516 240 48 0 chr12 81376750 81376875 -39880655 + B1F2 SINE Alu 11 141 -8 7 1205 372 43 0 0 chr12 81376875 81376921 -39880609 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 7 1205 363 106 0 0 chr12 81378123 81378189 -39879341 + (CATA)n Simple_repeat Simple_repeat 2 67 0 7 1205 202 189 0 0 chr12 81378488 81378525 -39879005 + C-rich Low_complexity Low_complexity 1 37 0 7 1205 189 0 0 0 chr12 81378526 81378547 -39878983 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1205 751 309 38 75 chr12 81378552 81378952 -39878578 - MLT2B4 LTR ERVL -64 400 1 7 1205 262 200 0 34 chr12 81379242 81379361 -39878169 + (TCTG)n Simple_repeat Simple_repeat 3 117 0 7 1205 264 224 0 0 chr12 81379407 81379456 -39878074 + ID4 SINE ID 2 50 -33 7 1205 824 241 9 66 chr12 81379474 81379687 -39877843 - B4 SINE B4 -89 203 3 7 1205 248 250 33 0 chr12 81379829 81379889 -39877641 - Tigger15a DNA TcMar -447 268 207 7 1205 1061 72 58 0 chr12 81380352 81380491 -39877039 + B1_Mus2 SINE Alu 1 147 0 7 1205 252 86 0 0 chr12 81380491 81380526 -39877004 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1205 1961 168 97 25 chr12 81380604 81380996 -39876534 + MTC LTR MaLR 2 421 0 7 1205 1283 48 0 0 chr12 81381057 81381204 -39876326 - B1_Mus2 SINE Alu 0 147 1 7 1205 236 164 0 32 chr12 81381318 81381381 -39876149 + (TCTCTG)n Simple_repeat Simple_repeat 3 63 0 7 1205 439 228 16 0 chr12 81382183 81382306 -39875224 + CT-rich Low_complexity Low_complexity 2 126 0 7 1205 215 290 59 79 chr12 81382847 81382893 -39874637 - MIRb SINE MIR -44 224 185 7 1205 1612 22 27 0 chr12 81382893 81383076 -39874454 + B2_Mm1a SINE B2 1 188 -5 7 1205 215 290 59 79 chr12 81383076 81383130 -39874400 - MIRb SINE MIR -84 184 126 7 1205 541 274 22 7 chr12 81383416 81383552 -39873978 - RSINE1 SINE B4 -25 140 3 7 1205 627 231 137 36 chr12 81384405 81384598 -39872932 + ID_B1 SINE B4 26 224 0 7 1205 445 229 241 7 chr12 81384994 81385139 -39872391 - B4 SINE B4 -109 183 5 7 1205 1183 58 0 0 chr12 81385182 81385320 -39872210 - B1_Mus2 SINE Alu -5 142 5 7 1205 2177 139 12 3 chr12 81385344 81385682 -39871848 + ORR1A1 LTR MaLR 6 346 0 7 1205 580 172 197 0 chr12 81386387 81386509 -39871021 + B1_Mus1 SINE Alu 3 148 0 7 1205 558 0 0 0 chr12 81386515 81386577 -39870953 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1205 397 286 61 0 chr12 81386637 81386735 -39870795 + PB1D7 SINE Alu 9 112 -8 7 1205 1166 65 0 0 chr12 81387506 81387645 -39869885 - B1_Mus2 SINE Alu -8 139 1 7 1205 918 109 21 21 chr12 81387811 81387951 -39869579 - B1_Mur3 SINE Alu -1 148 9 7 1205 270 136 0 0 chr12 81388030 81388074 -39869456 + (T)n Simple_repeat Simple_repeat 1 44 0 7 1205 519 17 0 0 chr12 81388192 81388252 -39869278 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 7 1205 1109 37 74 0 chr12 81388252 81388387 -39869143 - B1_Mus2 SINE Alu -2 145 1 7 1205 458 267 79 58 chr12 81389196 81389335 -39868195 - ID_B1 SINE B4 -10 214 73 7 1205 567 176 191 8 chr12 81389347 81389473 -39868057 - B1F SINE Alu 0 149 1 7 1205 180 188 0 0 chr12 81389484 81389516 -39868014 + MER5B DNA MER1_type 127 158 -20 7 1205 1670 140 105 103 chr12 81389667 81390018 -39867512 + RLTR18B LTR ERVK 2 353 -159 7 1205 536 244 69 0 chr12 81390180 81390311 -39867219 + ID_B1 SINE B4 81 220 -4 7 1205 507 223 9 9 chr12 81390329 81390442 -39867088 + B1F SINE Alu 37 149 0 7 1205 538 307 7 7 chr12 81390446 81390587 -39866943 + RSINE1 SINE B4 2 142 -23 7 1205 324 0 0 0 chr12 81390594 81390630 -39866900 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1205 843 175 21 14 chr12 81390667 81390812 -39866718 - B1_Mur2 SINE Alu -3 146 1 7 1205 330 255 124 62 chr12 81391256 81391369 -39866161 + MLT1A LTR MaLR 249 368 -6 7 1205 250 160 0 0 chr12 81392936 81392986 -39864544 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 7 1205 426 285 159 0 chr12 81393104 81393255 -39864275 + MER5B DNA MER1_type 1 175 -3 7 1205 197 184 0 26 chr12 81393424 81393463 -39864067 + MIRm SINE MIR 126 163 -113 8 1205 23 0 0 0 chr12 81393524 81393547 -39863983 + AT_rich Low_complexity Low_complexity 1 23 0 8 1205 201 284 0 0 chr12 81393604 81393678 -39863852 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1205 278 346 10 0 chr12 81393700 81393804 -39863726 + (CA)n Simple_repeat Simple_repeat 1 105 0 8 1205 427 264 194 6 chr12 81394053 81394213 -39863317 + Charlie19a DNA Charlie 104 293 -93 8 1205 189 94 0 0 chr12 81394455 81394487 -39863043 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 8 1205 731 173 75 8 chr12 81394488 81394622 -39862908 - B1_Mus2 SINE Alu -2 145 3 8 1205 262 283 0 0 chr12 81394752 81394805 -39862725 + ID4 SINE ID 24 76 -7 8 1206 580 168 52 26 chr12 81396321 81396437 -39861093 + PB1D9 SINE Alu 1 119 -1 8 1206 1140 72 0 0 chr12 81396444 81396582 -39860948 + B1_Mus2 SINE Alu 1 138 -9 8 1206 297 51 0 0 chr12 81396582 81396621 -39860909 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1206 1251 274 14 0 chr12 81396634 81396922 -39860608 + B4A SINE B4 1 292 0 8 1206 340 277 99 8 chr12 81396944 81397075 -39860455 + B1F1 SINE Alu 6 148 -1 8 1206 395 194 0 0 chr12 81397081 81397143 -39860387 + ID4_ SINE ID 9 70 -13 8 1206 474 125 0 0 chr12 81397149 81397229 -39860301 + (CA)n Simple_repeat Simple_repeat 2 81 0 8 1206 823 177 35 7 chr12 81398257 81398386 -39859144 + B1_Mur1 SINE Alu 4 133 -16 8 1206 297 0 0 0 chr12 81398386 81398419 -39859111 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 8 1206 823 177 35 7 chr12 81398419 81398431 -39859099 + B1_Mur1 SINE Alu 134 149 0 8 1206 633 195 61 30 chr12 81398806 81398938 -39858592 - B1_Mur3 SINE Alu -11 138 3 8 1206 358 253 40 0 chr12 81399386 81399461 -39858069 + RSINE1 SINE B4 54 131 -34 8 1206 438 108 0 0 chr12 81399482 81399547 -39857983 + (CACG)n Simple_repeat Simple_repeat 3 67 0 8 1206 252 0 0 0 chr12 81399798 81399826 -39857704 + (TGGGGG)n Simple_repeat Simple_repeat 5 32 0 8 1206 465 312 7 28 chr12 81399832 81399974 -39857556 - RSINE1 SINE B4 -21 144 6 8 1206 640 159 142 8 chr12 81400855 81400982 -39856548 + B1_Mur1 SINE Alu 2 145 -4 8 1206 613 304 0 7 chr12 81400996 81401135 -39856395 - RSINE1 SINE B4 -24 141 4 8 1206 1142 106 0 45 chr12 81401184 81401362 -39856168 + B2_Mm2 SINE B2 1 170 -25 8 1206 487 316 186 23 chr12 81401421 81401722 -39855808 - ORR1E LTR MaLR -6 353 4 8 1206 564 211 48 86 chr12 81402418 81402605 -39854925 + B2_Mm2 SINE B2 2 181 -14 8 1206 1151 65 0 0 chr12 81402617 81402756 -39854774 - B1_Mm SINE Alu -8 139 1 8 1206 1074 251 188 32 chr12 81402857 81403298 -39854232 + RLTR28B LTR ERVL 1 510 -14 8 1206 318 292 88 22 chr12 81403317 81403408 -39854122 - PB1D10 SINE Alu -20 97 1 8 1206 473 204 107 36 chr12 81403412 81403524 -39854006 - ID_B1 SINE B4 -1 223 104 8 1206 235 323 0 0 chr12 81403750 81403843 -39853687 - L1M5 LINE L1 -1018 5128 5036 8 1206 978 130 14 0 chr12 81403846 81403992 -39853538 - B1_Mur4 SINE Alu 0 150 3 8 1206 328 161 0 0 chr12 81404018 81404074 -39853456 - ID_B1 SINE B4 0 224 169 8 1206 215 243 56 14 chr12 81404074 81404089 -39853441 - B1_Mur3 SINE Alu 0 149 76 8 1206 341 332 28 64 chr12 81404304 81404499 -39853031 + L1MEg LINE L1 860 1053 -5565 8 1206 747 146 94 7 chr12 81404499 81404637 -39852893 + B1_Mur4 SINE Alu 1 150 0 8 1206 341 332 28 64 chr12 81404637 81404724 -39852806 + L1MEg LINE L1 1054 1132 -5486 8 1206 2065 267 217 36 chr12 81404855 81405195 -39852335 + MTEa-int LTR MaLR 182 597 -983 8 1206 3140 35 67 0 chr12 81405195 81405570 -39851960 - MTB LTR MaLR 0 400 1 8 1206 2065 267 217 36 chr12 81405570 81406045 -39851485 + MTEa-int LTR MaLR 598 1146 -434 8 1206 1795 157 84 31 chr12 81406045 81406267 -39851263 + ORR1D1 LTR MaLR 1 228 -146 8 1206 273 29 0 0 chr12 81406267 81406301 -39851229 + (CCTG)n Simple_repeat Simple_repeat 1 34 0 8 1206 1795 157 84 31 chr12 81406301 81406403 -39851127 + ORR1D1 LTR MaLR 229 342 -32 8 1206 3540 28 0 0 chr12 81406403 81406799 -39850731 - MTA_Mm LTR MaLR 0 396 1 8 1206 1795 157 84 31 chr12 81406799 81406828 -39850702 + ORR1D1 LTR MaLR 343 373 -1 8 1206 1656 201 77 50 chr12 81406829 81406978 -39850552 + MTEa-int LTR MaLR 1167 1308 -272 8 1206 796 335 61 20 chr12 81406978 81407487 -39850043 + MT2A LTR ERVL 4 533 0 8 1206 1656 201 77 50 chr12 81407487 81407740 -39849790 + MTEa-int LTR MaLR 1309 1580 0 8 1206 1148 244 81 26 chr12 81407740 81408047 -39849483 + MTEa LTR MaLR 1 324 -55 8 1206 303 161 0 0 chr12 81408050 81408106 -39849424 + CT-rich Low_complexity Low_complexity 1 56 0 8 1206 384 313 26 32 chr12 81408106 81408261 -39849269 - HAL1-3A_ME LINE L1 -421 2437 2284 8 1206 381 43 0 0 chr12 81408261 81408308 -39849222 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 8 1206 317 261 148 0 chr12 81408407 81408495 -39849035 + L1MEg LINE L1 1488 1588 -5045 8 1206 408 256 53 126 chr12 81408503 81408813 -39848717 + L1MEg LINE L1 1748 2016 -4617 8 1206 253 238 93 23 chr12 81409210 81409296 -39848234 + ID_B1 SINE B4 70 161 -63 8 1206 462 317 62 41 chr12 81409284 81409478 -39848052 + B4A SINE B4 87 284 -8 8 1206 216 0 0 0 chr12 81409541 81409565 -39847965 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1206 306 0 0 0 chr12 81409565 81409598 -39847932 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 8 1206 261 183 17 0 chr12 81409613 81409673 -39847857 + L1MEg LINE L1 2657 2717 -3820 8 1206 431 212 16 56 chr12 81409670 81409795 -39847735 + L1MA10 LINE L1 6215 6334 0 8 1206 383 314 8 8 chr12 81409815 81409934 -39847596 + PB1 SINE Alu 2 120 -7 8 1206 320 286 0 0 chr12 81409946 81410016 -39847514 + ID4 SINE ID 12 81 -2 8 1206 726 224 0 13 chr12 81410171 81410320 -39847210 + B1_Mur2 SINE Alu 2 148 -1 8 1206 252 184 0 0 chr12 81410320 81410369 -39847161 + GA-rich Low_complexity Low_complexity 2 50 0 8 1206 207 100 0 0 chr12 81410416 81410446 -39847084 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 8 1206 985 223 14 19 chr12 81410460 81410670 -39846860 + B3 SINE B2 1 209 -7 8 1206 360 276 11 44 chr12 81410705 81410741 -39846789 + ID SINE ID 49 81 -143 8 1206 412 148 33 0 chr12 81410741 81410802 -39846728 + PB1D9 SINE Alu 1 63 -57 8 1206 717 45 0 0 chr12 81410871 81410960 -39846570 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 8 1206 228 288 0 0 chr12 81410961 81411027 -39846503 + L1MD LINE L1 3269 3334 -2812 8 1206 283 306 9 35 chr12 81411053 81411168 -39846362 + L1MEg LINE L1 3792 3903 -2634 8 1206 463 345 43 23 chr12 81411177 81411480 -39846050 + L1MEg LINE L1 4838 5146 -1391 8 1206 258 263 116 0 chr12 81411604 81411699 -39845831 + L1MEg LINE L1 5122 5227 -1310 8 1206 402 223 143 19 chr12 81411701 81411806 -39845724 + B1F2 SINE Alu 31 148 -1 8 1206 442 286 0 104 chr12 81411880 81412044 -39845486 + RSINE1 SINE B4 17 163 -2 8 1206 342 0 0 0 chr12 81412140 81412178 -39845352 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1206 247 189 0 0 chr12 81412179 81412232 -39845298 + L1MEg LINE L1 5372 5424 -1107 8 1206 882 144 14 0 chr12 81412253 81412392 -39845138 - B1_Mus1 SINE Alu -2 146 6 8 1206 238 308 21 90 chr12 81412290 81412479 -39845051 - ORR1B1-int LTR MaLR -755 754 579 8 1206 456 310 39 0 chr12 81412453 81412582 -39844948 - RSINE1 SINE B4 -29 136 3 8 1206 921 212 50 5 chr12 81412734 81412933 -39844597 - B3 SINE B2 -6 210 3 8 1206 496 302 44 5 chr12 81413029 81413235 -39844295 + ID_B1 SINE B4 4 217 -7 8 1206 325 225 38 0 chr12 81413256 81413336 -39844194 + L1MEg LINE L1 5603 5685 -846 8 1206 220 114 22 43 chr12 81413356 81413402 -39844128 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 8 1206 754 270 41 31 chr12 81413430 81413625 -39843905 + ID_B1 SINE B4 21 217 -7 8 1206 341 268 48 48 chr12 81413510 81413655 -39843875 - YREP_Mm Unknown Unknown -1511 301 157 8 1206 235 208 0 0 chr12 81413796 81413849 -39843681 + G-rich Low_complexity Low_complexity 1 53 0 8 1206 821 225 43 11 chr12 81414015 81414199 -39843331 + B3A SINE B2 3 192 -6 8 1206 814 289 74 0 chr12 81414215 81414513 -39843017 + L1MB8 LINE L1 5597 5916 -262 8 1206 333 299 52 7 chr12 81414550 81414685 -39842845 + L1MB8 LINE L1 6023 6163 -21 8 1206 757 214 0 0 chr12 81414702 81414842 -39842688 + B1_Mur4 SINE Alu 4 143 -7 8 1206 22 35 0 0 chr12 81414849 81414878 -39842652 + AT_rich Low_complexity Low_complexity 1 29 0 8 1206 782 181 176 27 chr12 81414889 81415076 -39842454 + B3 SINE B2 2 216 0 8 1206 1145 88 0 0 chr12 81415167 81415314 -39842216 + B1_Mus1 SINE Alu 2 148 0 8 1206 224 228 0 0 chr12 81415314 81415371 -39842159 + A-rich Low_complexity Low_complexity 1 57 0 8 1206 275 301 108 57 chr12 81415384 81415772 -39841758 + L1MC LINE L1 3594 4001 -2145 8 1206 860 170 197 11 chr12 81415856 81416034 -39841496 - B3 SINE B2 -4 212 2 8 1206 371 286 15 1 chr12 81416113 81416209 -39841321 + PB1D10 SINE Alu 1 99 -21 8 1206 626 155 43 52 chr12 81416236 81416328 -39841202 - B1_Mur2 SINE Alu -13 136 45 8 1206 2199 116 119 3 chr12 81416328 81416681 -39840849 - ORR1B1 LTR MaLR 0 394 1 8 1206 626 155 43 52 chr12 81416681 81416704 -39840826 - B1_Mur2 SINE Alu -105 44 22 8 1206 631 312 162 13 chr12 81416885 81417262 -39840268 + L1M5 LINE L1 5330 5762 -417 8 1206 924 118 41 14 chr12 81417266 81417412 -39840118 + B1_Mur4 SINE Alu 1 150 0 8 1206 271 279 15 0 chr12 81417771 81417839 -39839691 + BC1_Mm scRNA scRNA 20 88 -64 8 1206 309 26 0 0 chr12 81417936 81417974 -39839556 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1206 225 94 0 0 chr12 81418037 81418069 -39839461 + (GA)n Simple_repeat Simple_repeat 2 33 0 8 1206 1078 209 19 28 chr12 81418469 81418681 -39838849 + B3 SINE B2 1 210 -6 8 1206 2746 73 143 139 chr12 81418715 81419225 -39838305 - RLTR1B LTR ERV1 0 512 1 8 1206 247 245 340 10 chr12 81419348 81419451 -39838079 - ID_B1 SINE B4 0 224 88 8 1206 197 315 0 0 chr12 81419699 81419753 -39837777 - MIRc SINE MIR 0 268 215 8 1206 510 281 0 76 chr12 81420426 81420537 -39836993 + B1F2 SINE Alu 29 139 -10 8 1206 297 0 0 0 chr12 81420537 81420570 -39836960 + (CTAA)n Simple_repeat Simple_repeat 3 35 0 8 1206 510 281 0 76 chr12 81420570 81420589 -39836941 + B1F2 SINE Alu 140 149 0 8 1206 866 118 27 20 chr12 81420656 81420803 -39836727 + B1_Mur4 SINE Alu 2 149 -1 8 1206 460 192 11 27 chr12 81421296 81421410 -39836120 + B1F2 SINE Alu 39 148 -1 8 1206 455 255 10 0 chr12 81421423 81421521 -39836009 + RSINE1 SINE B4 22 120 -45 8 1206 249 33 0 0 chr12 81421888 81421918 -39835612 + (TTA)n Simple_repeat Simple_repeat 2 31 0 8 1206 498 252 98 8 chr12 81421929 81422061 -39835469 - B1F1 SINE Alu -5 144 1 8 1206 386 312 70 25 chr12 81422280 81422438 -39835092 - MER2 DNA MER2_type -1 344 180 9 1206 279 250 30 30 chr12 81422441 81422507 -39835023 - MTEa LTR MaLR -4 375 310 9 1206 1262 41 0 0 chr12 81422507 81422654 -39834876 + B1_Mus2 SINE Alu 1 147 0 9 1206 180 0 0 0 chr12 81422654 81422674 -39834856 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1206 226 130 61 61 chr12 81422677 81422726 -39834804 - MTEa LTR MaLR -55 324 276 9 1206 317 250 49 133 chr12 81422865 81423008 -39834522 - MTEa LTR MaLR -244 135 5 9 1206 1024 240 14 5 chr12 81423162 81423380 -39834150 + ID_B1 SINE B4 5 224 0 9 1206 364 215 194 0 chr12 81424132 81424225 -39833305 + B1F SINE Alu 32 142 -7 9 1206 252 240 0 20 chr12 81424382 81424433 -39833097 + MIRb SINE MIR 216 265 -3 9 1206 845 201 61 10 chr12 81424460 81424656 -39832874 + B3 SINE B2 5 210 -6 9 1206 1712 177 85 42 chr12 81425799 81426223 -39831307 - RMER10A LTR ERVL 0 442 1 9 1206 202 333 117 14 chr12 81426779 81426929 -39830601 - MIRb SINE MIR -6 256 98 9 1206 623 171 9 9 chr12 81427426 81427532 -39829998 - B1_Mus1 SINE Alu -41 107 2 9 1206 295 268 42 32 chr12 81427577 81427701 -39829829 - L1MB8 LINE L1 -237 5942 5814 9 1206 530 304 43 0 chr12 81427717 81427855 -39829675 - ID_B1 SINE B4 -6 218 75 9 1206 300 188 0 0 chr12 81428077 81428146 -39829384 + CT-rich Low_complexity Low_complexity 3 71 0 9 1206 774 177 0 23 chr12 81428148 81428281 -39829249 - B1_Mur3 SINE Alu -19 130 1 9 1206 510 250 77 15 chr12 81428291 81428421 -39829109 - B1_Mur1 SINE Alu -6 143 6 9 1206 313 293 73 73 chr12 81428421 81428442 -39829088 - B4A SINE B4 -71 221 71 9 1206 288 351 51 25 chr12 81428501 81428738 -39828792 - L1M5 LINE L1 -342 5852 5610 9 1206 396 0 0 0 chr12 81428940 81428984 -39828546 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1206 252 0 0 0 chr12 81429073 81429101 -39828429 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1206 1199 115 0 42 chr12 81429131 81429162 -39828368 - B2_Mm2 SINE B2 -12 183 160 9 1206 180 0 0 0 chr12 81429162 81429182 -39828348 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 9 1206 1199 115 0 42 chr12 81429182 81429341 -39828189 - B2_Mm2 SINE B2 -36 159 1 9 1206 362 244 0 43 chr12 81429341 81429432 -39828098 - RSINE1 SINE B4 -74 91 5 9 1206 1103 115 14 77 chr12 81429653 81429860 -39827670 - B2_Mm2 SINE B2 -1 194 1 9 1206 768 116 84 28 chr12 81430015 81430157 -39827373 + B1_Mur4 SINE Alu 1 150 0 9 1206 713 130 10 119 chr12 81431501 81431680 -39825850 - B1_Mus2 SINE Alu 0 149 1 9 1206 307 235 77 123 chr12 81431680 81431708 -39825822 - RLTR25B LTR ERVK -646 382 362 9 1206 753 176 0 0 chr12 81432318 81432460 -39825070 + GA-rich Low_complexity Low_complexity 3 144 0 9 1206 498 202 112 17 chr12 81432460 81432576 -39824954 - B1_Mus1 SINE Alu -12 136 10 9 1206 220 286 15 31 chr12 81432518 81432583 -39824947 - B4 SINE B4 -142 150 87 9 1206 458 109 54 9 chr12 81433408 81433511 -39824019 + CT-rich Low_complexity Low_complexity 8 116 0 9 1206 297 0 0 0 chr12 81433511 81433544 -39823986 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1206 23 33 0 0 chr12 81433724 81433754 -39823776 + AT_rich Low_complexity Low_complexity 1 30 0 9 1206 237 33 0 0 chr12 81434216 81434246 -39823284 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1206 379 221 105 30 chr12 81434628 81434763 -39822767 + B3A SINE B2 1 170 -28 9 1206 262 129 130 91 chr12 81435036 81435113 -39822417 - ID4 SINE ID -3 80 1 9 1206 228 173 70 88 chr12 81435768 81435825 -39821705 + PB1D7 SINE Alu 1 56 -64 9 1206 431 277 30 0 chr12 81435863 81435964 -39821566 + PB1D7 SINE Alu 1 104 -16 9 1206 759 43 278 0 chr12 81436322 81436437 -39821093 - B1_Mm SINE Alu 0 147 1 9 1206 201 108 0 0 chr12 81441496 81441533 -39815997 + (A)n Simple_repeat Simple_repeat 1 37 0 9 1206 590 130 181 31 chr12 81441830 81441957 -39815573 + B1_Mur2 SINE Alu 2 147 -2 9 1206 202 344 31 15 chr12 81442278 81442343 -39815187 - MIRb SINE MIR -176 92 27 9 1206 935 158 7 47 chr12 81443285 81443479 -39814051 - B3 SINE B2 -9 186 1 9 1206 610 88 0 0 chr12 81443510 81443590 -39813940 + BC1_Mm scRNA scRNA 3 82 -70 9 1206 186 71 0 0 chr12 81443686 81443714 -39813816 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1206 1149 56 0 0 chr12 81443714 81443852 -39813678 - B1_Mus2 SINE Alu -4 143 6 9 1206 986 189 59 5 chr12 81444433 81444635 -39812895 + B3 SINE B2 1 213 -3 9 1206 523 173 135 9 chr12 81444824 81444935 -39812595 + B1_Mus1 SINE Alu 15 139 -9 9 1206 231 88 0 0 chr12 81444935 81444969 -39812561 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 9 1206 324 250 0 12 chr12 81445608 81445693 -39811837 - PB1D10 SINE Alu 0 117 34 9 1206 633 281 234 25 chr12 81446317 81446788 -39810742 + Lx8 LINE L1 6903 7471 -2 9 1206 1585 43 0 0 chr12 81446882 81447068 -39810462 + B2_Mm1a SINE B2 2 187 -6 9 1206 1310 82 32 11 chr12 81447091 81447276 -39810254 + B2_Mm2 SINE B2 3 191 -4 9 1206 256 212 76 0 chr12 81447366 81447432 -39810098 + ID4 SINE ID 1 71 -12 9 1206 235 178 44 0 chr12 81447439 81447484 -39810046 + GA-rich Low_complexity Low_complexity 3 49 0 9 1206 180 0 0 0 chr12 81448057 81448077 -39809453 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1206 574 68 11 0 chr12 81448114 81448202 -39809328 - L1Md_F2 LINE L1 0 6582 6494 9 1206 1199 68 0 0 chr12 81448299 81448445 -39809085 - B1_Mus1 SINE Alu 0 148 3 9 1206 378 0 0 0 chr12 81448445 81448487 -39809043 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1206 1555 62 0 0 chr12 81448492 81448684 -39808846 - B2_Mm1t SINE B2 -1 192 1 9 1206 555 241 20 68 chr12 81448707 81448854 -39808676 - ID_B1 SINE B4 0 224 85 9 1206 285 222 56 0 chr12 81448976 81449048 -39808482 - B1_Mur1 SINE Alu -16 133 58 9 1206 304 252 208 8 chr12 81449968 81450088 -39807442 + RSINE1 SINE B4 3 146 -19 9 1206 1240 102 11 11 chr12 81450383 81450561 -39806969 + B2_Mm1a SINE B2 2 179 -14 9 1206 371 102 321 9 chr12 81450611 81450720 -39806810 + B2_Mm2 SINE B2 47 189 -6 9 1206 685 268 153 153 chr12 81451081 81451328 -39806202 - MTE2a LTR MaLR -51 368 75 9 1206 751 188 7 35 chr12 81451328 81451471 -39806059 + B1_Mur2 SINE Alu 5 143 -6 9 1206 335 268 153 153 chr12 81451471 81451589 -39805941 - MTE2a LTR MaLR -292 127 3 9 1206 1540 233 44 136 chr12 81451970 81452586 -39804944 + RCHARR1 DNA MER1_type 416 974 0 9 1206 596 220 93 12 chr12 81452859 81453046 -39804484 + B3A SINE B2 9 192 -6 9 1206 305 273 13 0 chr12 81453055 81453132 -39804398 + B4A SINE B4 1 78 -214 9 1206 271 137 102 184 chr12 81453168 81453266 -39804264 + B4 SINE B4 203 292 0 9 1206 505 267 25 0 chr12 81453506 81453626 -39803904 + B1F SINE Alu 14 136 -13 9 1206 363 260 79 10 chr12 81453654 81453755 -39803775 + PB1D10 SINE Alu 2 109 -8 9 1206 296 161 0 16 chr12 81453825 81453888 -39803642 + GA-rich Low_complexity Low_complexity 2 63 0 9 1206 212 0 0 35 chr12 81454041 81454070 -39803460 + (CAAAC)n Simple_repeat Simple_repeat 1 28 0 9 1206 1725 21 0 0 chr12 81454130 81454322 -39803208 + B2_Mm1a SINE B2 2 193 0 9 1206 537 156 0 0 chr12 81454680 81454776 -39802754 + CT-rich Low_complexity Low_complexity 2 97 0 9 1206 285 264 110 0 chr12 81454796 81454887 -39802643 - PB1D10 SINE Alu -15 102 2 9 1206 2864 52 8 0 chr12 81455095 81455482 -39802048 - MTB LTR MaLR -5 395 6 9 1206 459 274 120 62 chr12 81455673 81455965 -39801565 + L2a LINE L2 3117 3425 -1 9 1206 361 257 0 0 chr12 81456363 81456433 -39801097 + ID4 SINE ID 3 72 -11 9 1206 358 111 32 0 chr12 81456654 81456717 -39800813 + B1_Mus2 SINE Alu 82 146 -1 9 1206 510 254 106 0 chr12 81457188 81457330 -39800200 + RSINE1 SINE B4 3 159 -6 9 1206 350 218 1 99 chr12 81457568 81457689 -39799841 - B1_Mur4 SINE Alu -35 114 4 9 1206 421 155 108 6 chr12 81457741 81457849 -39799681 - B1_Mus2 SINE Alu 0 147 3 9 1206 309 215 0 13 chr12 81458096 81458172 -39799358 + ID4 SINE ID 1 75 -77 9 1206 521 187 93 0 chr12 81458441 81458548 -39798982 + B1_Mur1 SINE Alu 33 149 0 9 1206 294 355 92 21 chr12 81458577 81458718 -39798812 - RSINE1 SINE B4 -4 161 11 9 1206 888 51 130 107 chr12 81459162 81459339 -39798191 + B2_Mm2 SINE B2 8 188 -7 9 1206 230 326 19 112 chr12 81459709 81459815 -39797715 + MER102b DNA MER1_type 21 116 -225 9 1206 513 285 30 8 chr12 81459815 81459946 -39797584 + RSINE1 SINE B4 4 137 -28 9 1206 394 321 0 18 chr12 81460415 81460497 -39797033 + (TG)n Simple_repeat Simple_repeat 2 82 0 9 1206 1292 29 106 22 chr12 81460497 81460676 -39796854 - B2_Mm2 SINE B2 0 195 2 9 1206 394 321 0 18 chr12 81460676 81460764 -39796766 + (TG)n Simple_repeat Simple_repeat 1 87 0 9 1206 640 154 202 8 chr12 81461024 81461148 -39796382 + B1_Mus1 SINE Alu 1 148 0 9 1206 38 61 0 0 chr12 81461263 81461329 -39796201 + AT_rich Low_complexity Low_complexity 1 66 0 9 1206 459 232 10 10 chr12 81461743 81461843 -39795687 - PB1D9 SINE Alu -7 113 14 9 1206 214 269 51 13 chr12 81461772 81461851 -39795679 - B4 SINE B4 -123 169 88 9 1206 590 182 87 8 chr12 81462204 81462331 -39795199 - B1_Mur2 SINE Alu -1 148 12 9 1206 200 97 15 46 chr12 81462433 81462498 -39795032 + A-rich Low_complexity Low_complexity 1 63 0 9 1206 931 198 26 26 chr12 81463235 81463427 -39794103 + B3 SINE B2 1 192 -24 1 1206 423 183 0 0 chr12 81463754 81463825 -39793705 + B3A SINE B2 2 72 -126 1 1206 334 327 0 9 chr12 81463982 81464090 -39793440 + PB1D10 SINE Alu 5 111 -6 1 1206 374 281 30 40 chr12 81464178 81464278 -39793252 + RSINE1 SINE B4 60 158 -7 1 1206 357 24 0 0 chr12 81464284 81464326 -39793204 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1206 234 91 0 0 chr12 81464441 81464474 -39793056 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1 1206 1235 41 0 0 chr12 81464475 81464622 -39792908 - B1_Mus1 SINE Alu 0 148 2 1 1206 926 195 76 10 chr12 81464689 81464886 -39792644 + B3 SINE B2 1 210 -6 1 1206 524 225 81 68 chr12 81465370 81465469 -39792061 - RSINE1 SINE B4 -16 276 140 1 1206 448 141 140 11 chr12 81465469 81465562 -39791968 - PB1D9 SINE Alu -15 105 1 1 1206 524 225 81 68 chr12 81465562 81465660 -39791870 - RSINE1 SINE B4 -16 139 1 1 1206 225 312 78 0 chr12 81465699 81465763 -39791767 - ID4_ SINE ID -14 69 1 1 1206 234 0 0 0 chr12 81465775 81465801 -39791729 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1206 291 322 0 43 chr12 81465801 81465910 -39791620 - B1F SINE Alu -13 107 3 1 1206 865 9 0 0 chr12 81465984 81466091 -39791439 - B1_Mus1 SINE Alu -7 141 35 1 1206 285 128 0 0 chr12 81466777 81466824 -39790706 + (CATG)n Simple_repeat Simple_repeat 1 47 0 1 1206 635 293 30 111 chr12 81467471 81467878 -39789652 - L2a LINE L2 -1 3425 3052 1 1206 374 270 42 42 chr12 81467917 81468060 -39789470 + B1F SINE Alu 7 149 0 1 1206 901 92 120 38 chr12 81468149 81468307 -39789223 - L1Md_F2 LINE L1 0 6582 6412 1 1206 228 35 0 0 chr12 81468734 81468763 -39788767 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 1 1206 567 106 11 11 chr12 81468877 81468972 -39788558 + PB1D9 SINE Alu 24 118 -2 1 1206 191 114 29 0 chr12 81469581 81469616 -39787914 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1206 661 164 9 0 chr12 81469664 81469780 -39787750 - B3A SINE B2 -81 117 1 1 1206 524 223 8 47 chr12 81469871 81469985 -39787545 - B3 SINE B2 -90 126 17 1 1206 880 225 206 58 chr12 81469985 81470311 -39787219 + ORR1D1 LTR MaLR 1 374 0 1 1206 524 223 8 47 chr12 81470311 81470323 -39787207 - B3 SINE B2 -200 16 5 1 1206 22 0 0 0 chr12 81470568 81470590 -39786940 + AT_rich Low_complexity Low_complexity 1 22 0 1 1206 246 143 31 16 chr12 81470790 81470854 -39786676 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1206 224 330 32 42 chr12 81472535 81472630 -39784900 - PB1 SINE Alu -33 94 1 1 1206 316 225 191 0 chr12 81472668 81472757 -39784773 + PB1D9 SINE Alu 15 120 0 1 1206 269 312 72 78 chr12 81472785 81472938 -39784592 + RSINE1 SINE B4 4 155 -10 1 1206 1017 122 19 0 chr12 81473449 81473605 -39783925 - B2_Mm2 SINE B2 -2 193 35 1 1206 588 135 48 0 chr12 81473624 81473728 -39783802 - B1_Mur4 SINE Alu -36 114 6 1 1206 1560 57 5 0 chr12 81473852 81474044 -39783486 - B2_Mm1a SINE B2 0 193 1 1 1206 356 270 0 51 chr12 81474730 81474847 -39782683 + PB1 SINE Alu 15 125 -2 1 1206 273 330 73 0 chr12 81475455 81475564 -39781966 + MIR3 SINE MIR 49 165 -43 1 1206 22 0 0 0 chr12 81475699 81475721 -39781809 + AT_rich Low_complexity Low_complexity 1 22 0 1 1206 241 330 22 11 chr12 81475982 81476074 -39781456 + PB1D10 SINE Alu 23 115 -2 1 1206 911 106 34 34 chr12 81476093 81476240 -39781290 + B1_Mur3 SINE Alu 2 148 -1 1 1206 685 138 0 9 chr12 81476496 81476606 -39780924 - B1_Mus1 SINE Alu -37 111 3 1 1206 555 137 0 21 chr12 81477898 81477995 -39779535 + B1_Mur4 SINE Alu 44 138 -12 1 1206 200 35 35 0 chr12 81477995 81478024 -39779506 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1206 1192 68 0 0 chr12 81478128 81478275 -39779255 - B1_Mus2 SINE Alu 0 147 1 1 1206 610 234 7 40 chr12 81478319 81478470 -39779060 + B1_Mur4 SINE Alu 5 150 0 1 1206 474 61 0 0 chr12 81478581 81478647 -39778883 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1206 1060 192 15 10 chr12 81478689 81478894 -39778636 + B3 SINE B2 2 207 -9 1 1206 221 180 0 20 chr12 81478978 81479029 -39778501 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 1 1206 768 224 7 0 chr12 81479181 81479324 -39778206 - RSINE1 SINE B4 -17 148 5 1 1206 1575 82 4 17 chr12 81479391 81479626 -39777904 + ORR1A2 LTR MaLR 96 327 0 1 1206 666 214 161 11 chr12 81479669 81479849 -39777681 - B3 SINE B2 -8 208 2 1 1206 2338 83 9 41 chr12 81480091 81480429 -39777101 + ORR1A2 LTR MaLR 1 327 0 1 1206 222 146 21 0 chr12 81481060 81481108 -39776422 + (CAGCC)n Simple_repeat Simple_repeat 5 53 0 1 1206 1031 69 7 56 chr12 81481108 81481717 -39775813 + (CACAG)n Simple_repeat Simple_repeat 1 578 0 1 1206 964 67 0 95 chr12 81482166 81482314 -39775216 - B1_Mus1 SINE Alu -12 136 3 1 1206 564 222 188 0 chr12 81482391 81482535 -39774995 + B3A SINE B2 14 184 -14 1 1206 288 0 0 0 chr12 81482560 81482592 -39774938 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1206 546 207 57 8 chr12 81482744 81482866 -39774664 - B1_Mm SINE Alu 0 147 20 1 1206 950 232 92 36 chr12 81482874 81483217 -39774313 + Lx8 LINE L1 5531 5927 -1546 1 1206 414 314 36 0 chr12 81483446 81483586 -39773944 + RSINE1 SINE B4 6 150 -15 1 1206 246 116 0 0 chr12 81483589 81483632 -39773898 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1 1206 2149 254 72 19 chr12 81483696 81484277 -39773253 + Lx8 LINE L1 6192 6803 -670 1 1206 1198 275 183 5 chr12 81484445 81484894 -39772636 + Lx8 LINE L1 6790 7318 -155 1 1206 404 171 198 0 chr12 81484895 81485006 -39772524 + B1_Mur2 SINE Alu 17 149 0 1 1206 282 188 0 68 chr12 81485085 81485159 -39772371 + Lx8 LINE L1 7405 7473 0 1 1206 199 74 0 115 chr12 81485464 81485525 -39772005 + T-rich Low_complexity Low_complexity 1 54 0 1 1206 669 129 8 8 chr12 81485527 81485644 -39771886 - B1_Mur4 SINE Alu -1 149 33 1 1206 1537 53 0 5 chr12 81485986 81486174 -39771356 + B2_Mm1t SINE B2 2 188 -5 1 1206 2253 137 39 0 chr12 81486297 81486661 -39770869 - ORR1C1 LTR MaLR 0 378 1 1 1206 244 233 47 141 chr12 81487773 81487858 -39769672 + B1F1 SINE Alu 3 79 -70 1 1206 366 273 98 18 chr12 81487913 81488025 -39769505 + PB1D7 SINE Alu 5 125 -2 1 1206 484 230 43 56 chr12 81488767 81488928 -39768602 - B3 SINE B2 -3 213 55 1 1206 24 0 0 0 chr12 81488998 81489022 -39768508 + AT_rich Low_complexity Low_complexity 1 24 0 1 1206 584 252 15 0 chr12 81489026 81489157 -39768373 + B1_Mur2 SINE Alu 1 133 -16 1 1206 1380 93 0 20 chr12 81489157 81489355 -39768175 - B2_Mm2 SINE B2 0 195 2 1 1206 261 0 0 0 chr12 81489363 81489392 -39768138 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1206 565 114 40 114 chr12 81489404 81489553 -39767977 - Lx4A LINE L1 -4 7054 6917 1 1206 338 247 26 0 chr12 81489650 81489727 -39767803 + PB1D10 SINE Alu 12 90 -27 1 1206 280 281 57 24 chr12 81489727 81489774 -39767756 + ID_B1 SINE B4 93 220 -4 1 1206 719 195 91 91 chr12 81489818 81490027 -39767503 + B3 SINE B2 1 209 -7 1 1206 225 300 26 35 chr12 81490051 81490165 -39767365 + RSINE1 SINE B4 11 123 -42 1 1206 926 99 7 0 chr12 81490358 81490500 -39767030 + URR1B DNA MER1_type 83 225 0 1 1206 224 264 52 65 chr12 81490883 81490960 -39766570 - MIRm SINE MIR -1 275 200 1 1206 402 209 105 0 chr12 81491278 81491364 -39766166 + PB1D7 SINE Alu 19 113 -7 1 1206 912 231 49 5 chr12 81491374 81491578 -39765952 + B3 SINE B2 1 213 -3 1 1206 25 0 0 0 chr12 81491704 81491729 -39765801 + AT_rich Low_complexity Low_complexity 1 25 0 1 1206 278 290 47 0 chr12 81492102 81492209 -39765321 + PB1D7 SINE Alu 1 112 -8 1 1206 223 170 18 54 chr12 81492215 81492271 -39765259 + GA-rich Low_complexity Low_complexity 3 56 0 1 1206 218 279 103 0 chr12 81492789 81492857 -39764673 + ID2 SINE ID 3 77 -6 1 1206 505 299 92 39 chr12 81492983 81493265 -39764265 - L1ME3 LINE L1 -159 6003 5707 1 1206 540 219 42 8 chr12 81493623 81493743 -39763787 + B3 SINE B2 36 159 -57 1 1206 401 233 59 40 chr12 81493803 81493955 -39763575 - L1ME3 LINE L1 -869 5277 5123 1 1206 2093 54 7 0 chr12 81493949 81494252 -39763278 - L1_Mus4 LINE L1 -804 5832 5519 1 1206 5445 157 13 5 chr12 81494248 81495185 -39762345 + L1_Mm LINE L1 4443 5386 -497 1 1206 661 228 42 21 chr12 81495189 81495382 -39762148 - MTD LTR MaLR -217 202 6 1 1206 253 225 71 59 chr12 81496195 81496210 -39761320 + MT2B2 LTR ERVL 155 170 -414 1 1206 335 239 193 0 chr12 81496210 81496298 -39761232 + PB1D10 SINE Alu 1 105 -12 1 1206 400 257 17 103 chr12 81496694 81496811 -39760719 + RSINE1 SINE B4 59 165 0 1 1206 1562 48 0 5 chr12 81499070 81499258 -39758272 - B2_Mm2 SINE B2 -8 187 1 1 1206 209 109 22 0 chr12 81499429 81499475 -39758055 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1206 259 264 0 0 chr12 81499503 81499556 -39757974 + PB1D10 SINE Alu 47 99 -18 1 1206 444 240 153 35 chr12 81500285 81500514 -39757016 + MIR SINE MIR 7 262 0 1 1206 23 68 0 0 chr12 81500517 81500561 -39756969 + AT_rich Low_complexity Low_complexity 1 44 0 2 1206 958 56 0 0 chr12 81500596 81500721 -39756809 - B1_Mus1 SINE Alu -4 144 20 3 1206 499 259 7 52 chr12 81500721 81500744 -39756786 - ID_B1 SINE B4 0 195 77 4 1206 398 285 44 89 chr12 81501078 81501236 -39756294 + RSINE1 SINE B4 15 165 0 5 1206 392 234 26 61 chr12 81501333 81501447 -39756083 + PB1D10 SINE Alu 1 110 -7 6 1206 187 353 85 35 chr12 81501661 81501802 -39755728 + MIRb SINE MIR 86 233 -35 7 1206 285 244 11 64 chr12 81502387 81502496 -39755034 + B1F SINE Alu 12 114 -6 8 1206 2741 120 149 21 chr12 81502665 81503237 -39754293 - RMER6C LTR ERVK -45 645 1 9 1206 433 309 26 26 chr12 81503281 81503434 -39754096 + RSINE1 SINE B4 11 163 -2 1 1206 7798 45 6 29 chr12 81503468 81504036 -39753494 + L1_Mus2 LINE L1 5588 6144 -422 1 1206 1168 68 0 0 chr12 81504036 81504183 -39753347 + B1_Mm SINE Alu 1 147 0 1 1206 7798 45 6 29 chr12 81504183 81504624 -39752906 + L1_Mus2 LINE L1 6145 6654 0 1 1206 333 224 0 56 chr12 81504725 81504796 -39752734 + RSINE1 SINE B4 82 148 -17 1 1206 258 175 48 0 chr12 81504989 81505052 -39752478 + ID_B1 SINE B4 100 165 -59 1 1206 227 219 134 0 chr12 81505052 81505071 -39752459 + PB1D10 SINE Alu 19 111 -6 1 1206 348 216 13 51 chr12 81505903 81505981 -39751549 - ID4 SINE ID -7 76 2 1 1206 306 180 0 0 chr12 81506548 81506609 -39750921 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1206 530 266 101 6 chr12 81506696 81506855 -39750675 - B3A SINE B2 -18 180 7 1 1206 3191 60 8 2 chr12 81506928 81507326 -39750204 - MTB LTR MaLR 0 400 1 1 1206 556 276 15 45 chr12 81507729 81507930 -39749600 + B3A SINE B2 1 195 -3 2 1206 339 211 0 0 chr12 81508227 81508298 -39749232 + MTE2b LTR MaLR 255 325 -54 2 1206 489 185 8 16 chr12 81508334 81508460 -39749070 + GA-rich Low_complexity Low_complexity 3 127 0 2 1206 652 184 0 16 chr12 81508751 81508878 -39748652 + B1F SINE Alu 25 149 0 2 1206 678 302 31 11 chr12 81508880 81509071 -39748459 + B3A SINE B2 1 195 -3 2 1206 431 189 111 0 chr12 81509086 81509176 -39748354 + B1_Mur2 SINE Alu 31 130 -19 2 1206 204 179 0 0 chr12 81509206 81509245 -39748285 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2 1206 1465 88 16 0 chr12 81509312 81509504 -39748026 - B2_Mm2 SINE B2 0 195 1 2 1206 1369 68 23 0 chr12 81510015 81510191 -39747339 - B2_Mm2 SINE B2 -14 181 2 2 1206 218 223 0 6 chr12 81510322 81510383 -39747147 + PB1 SINE Alu 1 61 -66 2 1206 395 287 96 0 chr12 81510555 81510649 -39746881 + PB1D7 SINE Alu 2 104 -16 3 1206 21 0 0 0 chr12 81511141 81511162 -39746368 + AT_rich Low_complexity Low_complexity 1 21 0 3 1206 1074 74 0 63 chr12 81511243 81511401 -39746129 + B1_Mus1 SINE Alu 1 148 0 3 1206 529 216 58 157 chr12 81511410 81511652 -39745878 + B4A SINE B4 4 221 -71 3 1206 713 175 7 14 chr12 81511518 81511657 -39745873 + B1_Mus2 SINE Alu 9 146 -1 3 1206 983 93 79 18 chr12 81511664 81511829 -39745701 - B2_Mm1t SINE B2 -7 186 12 3 1206 586 182 86 14 chr12 81512511 81512650 -39744880 + B1_Mur1 SINE Alu 1 149 0 3 1206 552 275 128 6 chr12 81512737 81512916 -39744614 + B4A SINE B4 80 280 -12 3 1206 2030 129 56 0 chr12 81512916 81513256 -39744274 + RLTR15 LTR ERVK 1 359 0 3 1206 311 284 22 43 chr12 81513976 81514068 -39743462 - ID_B1 SINE B4 -41 183 94 3 1206 1033 43 64 21 chr12 81514285 81514426 -39743104 - B1_Mm SINE Alu 0 147 1 4 1206 234 272 140 11 chr12 81514644 81514737 -39742793 - PB1D9 SINE Alu -14 106 2 4 1206 1157 203 131 19 chr12 81514810 81515123 -39742407 - ORR1D1 LTR MaLR -2 372 24 4 1206 545 207 68 20 chr12 81515123 81515271 -39742259 - ORR1D1-int LTR MaLR -2 1368 1214 4 1206 699 118 0 0 chr12 81515315 81515425 -39742105 - B1_Mur3 SINE Alu -6 143 34 4 1206 3389 197 89 153 chr12 81515412 81515815 -39741715 - ORR1D1-int LTR MaLR -122 1248 1020 4 1206 1225 109 23 0 chr12 81515815 81515990 -39741540 - B2_Mm1t SINE B2 -14 179 1 4 1206 3389 197 89 153 chr12 81515990 81516918 -39740612 - ORR1D1-int LTR MaLR -351 1019 2 4 1206 1732 126 202 19 chr12 81516918 81517234 -39740296 - ORR1D1 LTR MaLR 0 374 1 4 1206 364 274 70 17 chr12 81517234 81517349 -39740181 - RSINE1 SINE B4 -41 124 4 4 1206 484 298 118 143 chr12 81517364 81517480 -39740050 + Charlie1a DNA MER1_type 129 230 -1225 4 1206 964 207 38 9 chr12 81517480 81517690 -39739840 - B3 SINE B2 0 216 1 4 1206 484 298 118 143 chr12 81517690 81518207 -39739323 + Charlie1a DNA MER1_type 231 746 -709 4 1206 3097 14 43 0 chr12 81518249 81518601 -39738929 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1206 56238 23 17 12 chr12 81518601 81525047 -39732483 + IAPEz-int LTR ERVK 8 6481 0 4 1206 3097 14 43 0 chr12 81525047 81525399 -39732131 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1206 452 283 168 16 chr12 81525526 81525716 -39731814 + ID_B1 SINE B4 3 221 -3 4 1206 735 164 104 0 chr12 81525725 81525859 -39731671 + B1_Mus1 SINE Alu 1 148 0 5 1206 453 285 0 62 chr12 81525883 81525902 -39731628 + ID_B1 SINE B4 79 215 -9 5 1206 544 219 31 31 chr12 81525902 81526029 -39731501 + B1F1 SINE Alu 14 140 -9 5 1206 281 237 83 58 chr12 81526105 81526226 -39731304 + Charlie1a DNA MER1_type 1326 1449 -6 4 1206 295 311 91 19 chr12 81526313 81526467 -39731063 + MER20 DNA MER1_type 41 205 -14 5 1206 421 275 20 66 chr12 81526572 81526631 -39730899 + ID_B1 SINE B4 77 135 -89 5 150 1356 71 66 0 chr12 81526631 81526813 -39730717 + B2_Mm2 SINE B2 2 195 0 5 1207 1062 64 28 7 chr12 81526822 81526963 -39730567 + B1_Mm SINE Alu 1 144 -3 5 1207 201 74 0 0 chr12 81526963 81526990 -39730540 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1207 421 275 20 66 chr12 81526990 81527071 -39730459 + ID_B1 SINE B4 141 220 -4 5 1207 832 156 43 101 chr12 81527138 81527345 -39730185 - B3A SINE B2 -1 197 3 5 1207 286 269 30 0 chr12 81527417 81527484 -39730046 + ID4_ SINE ID 4 72 -11 5 1207 250 240 0 0 chr12 81527486 81527536 -39729994 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1207 540 292 12 36 chr12 81527557 81527724 -39729806 + RSINE1 SINE B4 3 165 0 6 1207 941 144 195 27 chr12 81527743 81527928 -39729602 - B3 SINE B2 0 216 1 6 1207 405 257 9 9 chr12 81527947 81528053 -39729477 + PB1D9 SINE Alu 15 120 0 6 1207 454 320 84 54 chr12 81528567 81529052 -39728478 + RLTR11A2 LTR ERVK 1 500 -27 6 1207 374 258 0 40 chr12 81529075 81529176 -39728354 + RSINE1 SINE B4 23 119 -46 6 1207 1249 48 0 0 chr12 81529271 81529418 -39728112 + B1_Mus1 SINE Alu 2 148 0 6 1207 346 277 40 0 chr12 81529589 81529690 -39727840 + ID_B1 SINE B4 120 224 0 6 1207 1223 55 0 0 chr12 81530380 81530525 -39727005 + B1_Mm SINE Alu 1 145 -2 6 1207 207 0 0 0 chr12 81530525 81530548 -39726982 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1207 1034 157 73 0 chr12 81530721 81530912 -39726618 + B3 SINE B2 4 208 -8 7 1207 530 212 30 0 chr12 81531026 81531125 -39726405 - B3 SINE B2 -111 105 4 7 1207 235 203 15 15 chr12 81531175 81531240 -39726290 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 1207 358 256 0 0 chr12 81531378 81531456 -39726074 - ID4 SINE ID -5 78 1 7 1207 726 261 39 65 chr12 81531524 81531754 -39725776 - ID_B1 SINE B4 0 224 1 7 1207 214 222 36 18 chr12 81532255 81532310 -39725220 + PB1D10 SINE Alu 25 80 -37 7 1207 825 193 21 0 chr12 81532310 81532455 -39725075 + B1_Mur1 SINE Alu 2 149 0 7 1207 296 212 30 0 chr12 81532490 81532556 -39724974 + ID4 SINE ID 16 83 0 7 1207 213 294 73 7 chr12 81532667 81532804 -39724726 - MIRb SINE MIR -64 204 59 7 1207 385 197 0 38 chr12 81532919 81532998 -39724532 + ID_B1 SINE B4 79 154 -70 7 1207 244 343 83 9 chr12 81533097 81533206 -39724324 - PB1D10 SINE Alu 0 117 1 8 1207 805 196 120 11 chr12 81533233 81533424 -39724106 + B3 SINE B2 5 216 0 8 1207 421 154 151 19 chr12 81533892 81533998 -39723532 + ID_B1 SINE B4 99 218 -6 8 1207 315 208 23 126 chr12 81534520 81534647 -39722883 + PB1D7 SINE Alu 13 146 -1 8 1207 415 276 9 0 chr12 81534655 81534771 -39722759 + ID_B1 SINE B4 105 221 -3 8 1207 235 61 40 120 chr12 81534928 81535003 -39722527 + (CCCTAA)n Simple_repeat Simple_repeat 2 70 0 8 1207 309 161 237 0 chr12 81535084 81535177 -39722353 + PB1D9 SINE Alu 6 120 0 8 1207 195 125 0 0 chr12 81535178 81535218 -39722312 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1207 240 139 0 0 chr12 81535251 81535294 -39722236 + L1MB8 LINE L1 6120 6162 -16 8 1207 22 0 0 0 chr12 81535893 81535915 -39721615 + GC_rich Low_complexity Low_complexity 1 22 0 8 1207 207 100 0 0 chr12 81536116 81536146 -39721384 + (CCG)n Simple_repeat Simple_repeat 3 32 0 9 1207 222 236 0 0 chr12 81536955 81537010 -39720520 + C-rich Low_complexity Low_complexity 1 55 0 9 1207 318 266 0 35 chr12 81537048 81537161 -39720369 + G-rich Low_complexity Low_complexity 1 109 0 9 1207 180 158 0 0 chr12 81537392 81537430 -39720100 + (CCG)n Simple_repeat Simple_repeat 2 39 0 9 1207 235 264 0 0 chr12 81538468 81538521 -39719009 + AmnSINE1 SINE SINE 433 485 -90 9 1207 1622 36 0 20 chr12 81538951 81539148 -39718382 + B2_Mm1t SINE B2 1 193 0 9 1207 365 227 60 30 chr12 81539191 81539291 -39718239 + PB1D7 SINE Alu 12 114 -6 9 1207 499 88 274 0 chr12 81539319 81539421 -39718109 + B1_Mur3 SINE Alu 14 143 -6 9 1207 282 242 15 0 chr12 81539879 81539945 -39717585 - ID4 SINE ID -13 70 4 9 1207 410 272 44 44 chr12 81540020 81540201 -39717329 - MER53 DNA hAT 0 193 13 9 1207 1082 75 0 70 chr12 81540225 81540382 -39717148 + B1_Mm SINE Alu 2 147 0 1 1207 1416 75 11 16 chr12 81540470 81540659 -39716871 + B2_Mm2 SINE B2 1 188 -7 1 1207 446 239 9 26 chr12 81540674 81540790 -39716740 + B3 SINE B2 24 137 -79 1 1207 195 114 0 0 chr12 81540822 81540857 -39716673 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 1 1207 849 138 8 30 chr12 81540871 81541005 -39716525 + B1_Mus2 SINE Alu 1 131 -16 1 1207 412 266 39 8 chr12 81541343 81541474 -39716056 + B1F1 SINE Alu 13 148 -1 1 1207 672 284 83 53 chr12 81541477 81541829 -39715701 - Charlie7 DNA MER1_type -745 1867 1500 1 1207 928 194 148 0 chr12 81541829 81542025 -39715505 - URR1A DNA MER1_type 0 226 2 1 1207 672 284 83 53 chr12 81542025 81542047 -39715483 - Charlie7 DNA MER1_type -1113 1499 1482 1 1207 370 273 194 29 chr12 81542049 81542219 -39715311 + B3A SINE B2 1 198 0 1 1207 1568 23 0 0 chr12 81542359 81542532 -39714998 - LSU-rRNA_Hsa rRNA rRNA -1121 3914 3742 1 1207 679 191 0 0 chr12 81542645 81542771 -39714759 + B1_Mur3 SINE Alu 1 126 -23 1 1207 396 291 43 0 chr12 81543121 81543238 -39714292 + ID_B1 SINE B4 100 221 -3 1 1207 351 304 43 0 chr12 81543276 81543391 -39714139 + PB1D7 SINE Alu 1 120 0 1 1207 523 174 30 10 chr12 81543734 81543833 -39713697 + PB1D9 SINE Alu 13 113 -7 1 1207 1090 172 24 48 chr12 81543849 81544057 -39713473 + B3 SINE B2 3 205 -11 1 1207 266 83 0 59 chr12 81544119 81544170 -39713360 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1207 1315 91 43 0 chr12 81544170 81544357 -39713173 - B2_Mm2 SINE B2 0 195 1 1 1207 1281 182 199 15 chr12 81544360 81544701 -39712829 - RLTR12B LTR ERVK -24 504 101 1 1207 614 92 0 48 chr12 81544834 81544937 -39712593 + RLTR20A2 LTR ERVK 1 98 -453 1 1207 298 103 398 18 chr12 81544928 81545036 -39712494 - B2_Mm2 SINE B2 0 195 47 1 1207 1114 118 59 0 chr12 81545083 81545252 -39712278 - B2_Mm1t SINE B2 -14 179 1 1 1207 2172 133 8 56 chr12 81545252 81545631 -39711899 + RLTR20A2 LTR ERVK 86 446 -132 1 1207 288 0 0 0 chr12 81545648 81545680 -39711850 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1207 684 173 79 0 chr12 81545680 81545807 -39711723 + RLTR20A2 LTR ERVK 433 569 -9 1 1207 254 294 101 23 chr12 81545838 81545967 -39711563 + RSINE1 SINE B4 10 148 -17 1 1207 1123 81 0 0 chr12 81546083 81546231 -39711299 - B1_Mus1 SINE Alu 0 148 1 1 1207 921 134 14 7 chr12 81546430 81546573 -39710957 + B1_Mus1 SINE Alu 2 145 -3 1 1207 289 269 144 0 chr12 81546662 81546766 -39710764 + Lx7 LINE L1 6978 7096 -600 1 1207 233 287 0 2 chr12 81546833 81546898 -39710632 + B3 SINE B2 1 64 -134 1 1207 272 130 0 0 chr12 81546909 81546955 -39710575 + RLTR12B LTR ERVK 17 62 -466 1 1207 659 135 42 151 chr12 81547101 81547267 -39710263 - B1_Mur4 SINE Alu 0 150 3 1 1207 254 328 110 31 chr12 81547435 81547690 -39709840 - ERVL-E-int LTR ERVL -5105 562 288 1 1207 2133 212 50 81 chr12 81547881 81548476 -39709054 + RLTR18 LTR ERVK 31 607 -9 1 1207 315 169 0 0 chr12 81548535 81548594 -39708936 + BC1_Mm scRNA scRNA 2 60 -92 1 1207 306 225 101 0 chr12 81548593 81548682 -39708848 + RMER19A LTR ERVK 70 167 -570 1 1207 302 176 83 115 chr12 81548733 81548802 -39708728 + RMER19A LTR ERVK 434 510 -392 1 1207 3566 25 0 0 chr12 81548802 81549198 -39708332 + MTA_Mm LTR MaLR 1 396 0 1 1207 9863 14 0 4 chr12 81549198 81550300 -39707230 + MTA_Mm-int LTR MaLR 1 1098 0 1 1207 3611 20 0 0 chr12 81550300 81550696 -39706834 + MTA_Mm LTR MaLR 1 396 0 1 1207 302 176 83 115 chr12 81550696 81550720 -39706810 + RMER19A LTR ERVK 511 524 -378 1 1207 2386 191 64 57 chr12 81550727 81551930 -39705600 - MYSERV16_I-int LTR ERVK -521 2321 432 1 1207 256 274 28 9 chr12 81552007 81552114 -39705416 - MYSERV6-int LTR ERVK -1902 4648 4540 1 1207 2666 195 64 9 chr12 81552209 81552773 -39704757 - MYSERV6-int LTR ERVK -4410 4549 3955 1 1207 2711 187 53 51 chr12 81552780 81553445 -39704085 + RMER3D-int LTR ERVK 2177 2842 0 1 1207 2602 98 32 58 chr12 81553445 81553878 -39703652 + BGLII_Mus LTR ERVK 1 422 0 1 1207 1857 130 29 34 chr12 81553878 81554229 -39703301 + RMER19B LTR ERVK 525 873 -29 1 1207 12971 84 32 9 chr12 81554429 81556048 -39701482 + L1VL2 LINE L1 66 1745 -1870 1 1207 1240 41 7 0 chr12 81556048 81556195 -39701335 + B1_Mus1 SINE Alu 1 148 0 1 1207 13000 79 25 38 chr12 81556195 81557458 -39700072 + L1VL2 LINE L1 1746 2957 -658 1 1207 1698 21 0 0 chr12 81557472 81557659 -39699871 - B2_Mm1a SINE B2 -5 188 2 1 1207 21 57 0 0 chr12 81557816 81557851 -39699679 + AT_rich Low_complexity Low_complexity 1 35 0 1 1207 1449 89 5 0 chr12 81558170 81558361 -39699169 - B2_Mm1a SINE B2 -1 192 1 1 1207 240 214 0 0 chr12 81558443 81558457 -39699073 + A-rich Low_complexity Low_complexity 1 14 0 1 1207 1181 54 0 20 chr12 81558457 81558607 -39698923 + B1_Mus1 SINE Alu 1 147 -1 1 1207 240 214 0 0 chr12 81558607 81558676 -39698854 + A-rich Low_complexity Low_complexity 15 83 0 1 1207 5872 169 77 81 chr12 81558678 81560020 -39697510 - MurERV4_19-int LTR ERVK -4443 1337 1 1 1207 4750 110 47 11 chr12 81560020 81560264 -39697266 - RMER19A LTR ERVK 0 737 485 1 1207 221 57 29 0 chr12 81560264 81560299 -39697231 + (CAGTC)n Simple_repeat Simple_repeat 1 36 0 1 1207 4750 110 47 11 chr12 81560299 81560764 -39696766 - RMER19A LTR ERVK -253 484 4 1 1207 713 187 15 7 chr12 81560764 81560899 -39696631 - B1_Mur3 SINE Alu -13 136 1 1 1207 315 270 80 18 chr12 81560908 81561021 -39696509 - PB1D9 SINE Alu 0 120 1 1 1207 353 219 12 12 chr12 81561135 81561218 -39696312 + MER89 LTR ERV1 2 84 -475 1 1207 284 321 28 0 chr12 81561197 81561303 -39696227 + MER89 LTR ERV1 198 306 -253 1 1207 258 213 0 21 chr12 81561318 81561366 -39696164 + L1MD2 LINE L1 414 460 -6087 1 1207 401 234 123 58 chr12 81561385 81561539 -39695991 + B4A SINE B4 2 165 -127 1 1207 488 178 18 27 chr12 81561551 81561661 -39695869 - B3 SINE B2 -105 111 3 1 1207 487 294 0 105 chr12 81561709 81561861 -39695669 - B1F2 SINE Alu -10 139 4 1 1207 273 29 0 0 chr12 81561879 81561913 -39695617 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1207 360 252 39 10 chr12 81561913 81562017 -39695513 - PB1D10 SINE Alu -10 107 1 1 1207 544 253 45 39 chr12 81562391 81562547 -39694983 - ID_B1 SINE B4 -1 223 67 1 1207 278 238 0 31 chr12 81562911 81562976 -39694554 - ID_B1 SINE B4 -3 221 159 1 1207 659 235 5 81 chr12 81562969 81563154 -39694376 + ID_B1 SINE B4 54 224 0 1 1207 455 264 18 9 chr12 81563212 81563323 -39694207 + B3 SINE B2 1 112 -104 1 1207 705 69 0 10 chr12 81563351 81563453 -39694077 - B1_Mus2 SINE Alu 0 147 47 1 1207 1261 62 11 0 chr12 81563506 81563682 -39693848 + (GA)n Simple_repeat Simple_repeat 1 178 0 1 1207 650 23 0 11 chr12 81563765 81563852 -39693678 + L1Md_T LINE L1 6496 6581 -1 1 1207 270 81 0 0 chr12 81564925 81564962 -39692568 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1207 336 137 80 27 chr12 81564988 81565063 -39692467 - PB1D9 SINE Alu -17 103 25 1 1207 330 242 0 62 chr12 81565099 81565196 -39692334 - B3A SINE B2 -83 115 25 1 1207 5770 226 55 26 chr12 81565197 81565752 -39691778 - Lx6 LINE L1 -8 7452 6887 1 1207 2692 40 65 0 chr12 81565752 81566077 -39691453 - ORR1A1 LTR MaLR 0 346 1 1 1207 5770 210 93 20 chr12 81566077 81567019 -39690511 - Lx6 LINE L1 -799 6897 5869 1 1207 297 128 0 0 chr12 81567214 81567261 -39690269 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1 1207 1220 61 0 0 chr12 81567261 81567409 -39690121 - B1_Mus1 SINE Alu 0 148 1 1 1207 488 167 167 0 chr12 81567574 81567676 -39689854 - PB1D9 SINE Alu -1 119 1 1 1207 1160 48 14 7 chr12 81567700 81567847 -39689683 + B1_Mus1 SINE Alu 1 148 0 1 1207 246 62 0 0 chr12 81567847 81567879 -39689651 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1207 443 250 19 0 chr12 81567976 81568080 -39689450 - B3A SINE B2 -65 133 28 1 1207 682 155 311 0 chr12 81568102 81568263 -39689267 - B3 SINE B2 -4 212 2 1 1207 1313 74 0 22 chr12 81568329 81568508 -39689022 - B2_Mm2 SINE B2 -19 176 2 1 1207 626 168 23 23 chr12 81568513 81568641 -39688889 - B1_Mur4 SINE Alu -1 149 22 1 1207 31 0 0 0 chr12 81568644 81568675 -39688855 + AT_rich Low_complexity Low_complexity 1 31 0 1 1207 532 207 27 0 chr12 81568685 81568796 -39688734 + PB1D9 SINE Alu 2 115 -5 1 1207 324 248 164 97 chr12 81568812 81568937 -39688593 + B3 SINE B2 28 167 -49 1 1207 778 181 14 7 chr12 81568937 81569076 -39688454 - B1F2 SINE Alu -8 141 2 1 1207 243 0 0 0 chr12 81569076 81569103 -39688427 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 1 1207 324 248 164 97 chr12 81569103 81569141 -39688389 + B3 SINE B2 168 202 -14 1 1207 244 169 0 58 chr12 81569142 81569211 -39688319 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1 1207 892 123 22 0 chr12 81569717 81569855 -39687675 - B1_Mur4 SINE Alu 0 150 10 1 1207 338 259 50 33 chr12 81569874 81569994 -39687536 - L1M5 LINE L1 -651 5473 5352 1 1207 1107 48 7 27 chr12 81570025 81570174 -39687356 + B1_Mus1 SINE Alu 3 148 0 1 1207 183 184 0 0 chr12 81570181 81570219 -39687311 + A-rich Low_complexity Low_complexity 1 38 0 1 1207 345 217 108 0 chr12 81570315 81570398 -39687132 - PB1D10 SINE Alu -8 109 18 1 1207 33 25 0 0 chr12 81570409 81570449 -39687081 + AT_rich Low_complexity Low_complexity 1 40 0 1 1207 591 253 39 69 chr12 81570456 81570660 -39686870 - B3A SINE B2 0 198 1 1 1207 312 27 0 0 chr12 81570660 81570697 -39686833 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 1 1207 403 163 105 0 chr12 81570697 81570783 -39686747 - RLTR47_MM LTR ERV1 -83 449 355 1 1207 558 267 84 0 chr12 81570791 81570922 -39686608 - B1_Mur1 SINE Alu -7 142 1 1 1207 866 230 10 39 chr12 81570933 81571137 -39686393 - B3A SINE B2 0 198 1 1 1207 383 257 92 68 chr12 81571302 81571465 -39686065 + MER20 DNA MER1_type 2 168 -51 1 1207 1056 103 12 6 chr12 81571575 81571741 -39685789 - B2_Mm2 SINE B2 -19 176 10 1 1207 1381 87 43 0 chr12 81571854 81572039 -39685491 + B2_Mm2 SINE B2 2 194 -1 1 1207 1380 65 43 0 chr12 81572050 81572235 -39685295 - B2_Mm2 SINE B2 -1 194 2 1 1207 1085 70 139 6 chr12 81572239 81572397 -39685133 - B2_Mm2 SINE B2 -14 181 3 1 1207 480 164 54 162 chr12 81572490 81572657 -39684873 - B1_Mur3 SINE Alu 0 149 1 2 1207 26 30 0 0 chr12 81572789 81572822 -39684708 + AT_rich Low_complexity Low_complexity 1 33 0 2 1207 605 247 227 42 chr12 81573210 81573545 -39683985 - L1MB8 LINE L1 -2 6176 5780 2 1207 519 234 137 6 chr12 81573589 81573614 -39683916 - B3A SINE B2 0 198 174 2 1207 3272 45 0 5 chr12 81573614 81574012 -39683518 - L1Md_T LINE L1 0 6582 6187 2 1207 519 234 137 6 chr12 81574012 81574154 -39683376 - B3A SINE B2 -25 173 9 2 1207 1054 271 55 55 chr12 81574149 81574606 -39682924 - MLT1C LTR MaLR -9 458 2 2 1207 1191 242 75 31 chr12 81574631 81575154 -39682376 - L1MB8 LINE L1 -422 5762 5211 2 1207 193 38 132 0 chr12 81575195 81575248 -39682282 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 2 1207 949 141 0 13 chr12 81575248 81575399 -39682131 - B1_Mur4 SINE Alu -1 149 1 2 1207 1227 48 0 0 chr12 81575482 81575628 -39681902 + B1_Mus2 SINE Alu 2 147 0 2 1207 400 258 81 0 chr12 81575810 81575934 -39681596 - B1F1 SINE Alu -2 147 14 2 1207 219 36 0 0 chr12 81575967 81575995 -39681535 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 2 1207 372 206 27 0 chr12 81576198 81576271 -39681259 - B3A SINE B2 -121 77 3 2 1207 415 313 37 30 chr12 81576296 81576359 -39681171 - ID_B1 SINE B4 -75 149 86 2 1207 311 0 26 0 chr12 81576359 81576398 -39681132 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2 1207 415 313 37 30 chr12 81576398 81576469 -39681061 - ID SINE ID -139 85 14 2 1207 189 94 0 0 chr12 81576494 81576526 -39681004 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1207 210 136 0 0 chr12 81576871 81576915 -39680615 + (CAG)n Simple_repeat Simple_repeat 3 46 0 2 1207 184 376 37 37 chr12 81577409 81577572 -39679958 + MIRb SINE MIR 99 261 -7 2 1207 586 272 7 7 chr12 81577574 81577722 -39679808 + B1F1 SINE Alu 1 148 -1 2 1207 464 286 9 158 chr12 81577790 81578018 -39679512 - ID_B1 SINE B4 -29 195 2 2 1207 261 211 0 0 chr12 81578087 81578144 -39679386 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 2 1207 696 237 68 23 chr12 81578726 81578903 -39678627 - B3A SINE B2 -6 192 8 2 1207 226 259 19 0 chr12 81579035 81579089 -39678441 - B4A SINE B4 -148 144 90 2 1207 359 228 126 17 chr12 81579153 81579327 -39678203 - L1MEg LINE L1 -4659 1425 1233 2 1207 1633 26 5 5 chr12 81579409 81579602 -39677928 + B2_Mm1a SINE B2 1 193 0 2 1207 1084 83 7 0 chr12 81579640 81579785 -39677745 - B1_Mus1 SINE Alu 0 148 3 2 1207 444 231 47 19 chr12 81579830 81579936 -39677594 - B1_Mur2 SINE Alu -39 110 2 2 1207 374 311 61 28 chr12 81580339 81580551 -39676979 - MER20 DNA MER1_type 0 219 1 2 1207 249 242 121 0 chr12 81580711 81580810 -39676720 + Charlie4z DNA MER1_type 48 158 -9 2 1207 558 252 73 7 chr12 81580988 81581124 -39676406 - B1_Mur1 SINE Alu 0 149 5 2 1207 888 152 251 0 chr12 81582148 81582319 -39675211 - B3 SINE B2 -1 215 2 2 1207 475 244 188 0 chr12 81582563 81582723 -39674807 - B3 SINE B2 0 216 27 2 1207 243 0 0 0 chr12 81582750 81582777 -39674753 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1207 1116 66 0 0 chr12 81582777 81582913 -39674617 - B1_Mus2 SINE Alu -10 137 2 2 1207 216 189 0 0 chr12 81582913 81582950 -39674580 - B3A SINE B2 -157 41 5 2 1207 1162 61 0 7 chr12 81583141 81583289 -39674241 - B1_Mus2 SINE Alu 0 147 1 2 1207 28 29 0 0 chr12 81583326 81583361 -39674169 + AT_rich Low_complexity Low_complexity 1 35 0 2 1207 775 142 0 98 chr12 81583412 81583576 -39673954 - B1_Mur4 SINE Alu 0 150 3 2 1207 258 242 0 162 chr12 81583576 81583608 -39673922 - MT2B LTR ERVL -453 148 141 2 1207 347 256 192 0 chr12 81583620 81583776 -39673754 + MIR SINE MIR 11 196 -66 2 1207 745 75 31 62 chr12 81584197 81584325 -39673205 + B2_Mm2 SINE B2 6 129 -66 2 1207 245 316 26 0 chr12 81584326 81584402 -39673128 - RSINE1 SINE B4 -85 80 3 2 1207 755 196 31 0 chr12 81584506 81584669 -39672861 - B3 SINE B2 0 216 49 2 1207 21 0 0 0 chr12 81584763 81584784 -39672746 + GC_rich Low_complexity Low_complexity 1 21 0 2 1207 247 287 33 54 chr12 81584901 81584993 -39672537 - L1M5 LINE L1 -458 5666 5577 2 1207 318 295 150 50 chr12 81585544 81585744 -39671786 - HAL1 LINE L1 -19 2488 2269 2 1207 228 273 28 90 chr12 81586083 81586260 -39671270 - HAL1 LINE L1 -604 1903 1738 2 1207 242 283 269 4 chr12 81586319 81586564 -39670966 - HAL1 LINE L1 -915 1592 1283 2 1207 1166 75 0 0 chr12 81586578 81586724 -39670806 - B1_Mus2 SINE Alu 0 147 2 2 1207 1101 95 0 0 chr12 81587210 81587357 -39670173 - B1_Mus2 SINE Alu 0 147 1 2 1207 1194 113 17 6 chr12 81587464 81587642 -39669888 - B2_Mm2 SINE B2 -15 180 1 2 1207 349 130 49 61 chr12 81587765 81587847 -39669683 - B1_Mur4 SINE Alu -61 89 9 2 1207 925 150 0 7 chr12 81587886 81588034 -39669496 + B1_Mus1 SINE Alu 2 148 0 2 1207 2071 152 62 26 chr12 81588150 81588534 -39668996 - RMER10B LTR ERVL 0 398 1 2 1207 592 238 224 95 chr12 81588543 81589028 -39668502 - RMER17C-int LTR ERVK -83 3155 2609 2 1207 293 183 0 0 chr12 81589031 81589091 -39668439 - MYSERV6-int LTR ERVK -177 8782 8723 2 1207 875 165 226 6 chr12 81589245 81589422 -39668108 - B3 SINE B2 0 216 1 2 1207 526 210 126 0 chr12 81589787 81589906 -39667624 - B1_Mur1 SINE Alu -13 136 3 2 1207 1456 45 17 0 chr12 81589991 81590168 -39667362 + B2_Mm2 SINE B2 1 180 -15 2 1207 510 153 0 12 chr12 81590171 81590257 -39667273 - B1_Mus1 SINE Alu -62 86 2 2 1207 346 188 19 111 chr12 81590257 81590284 -39667246 - MT2B LTR ERVL -444 157 141 2 1207 641 217 8 0 chr12 81590962 81591082 -39666448 + RSINE1 SINE B4 14 134 -31 2 1207 232 286 16 0 chr12 81592579 81592642 -39664888 + CT-rich Low_complexity Low_complexity 1 64 0 2 1207 248 291 0 0 chr12 81592656 81592742 -39664788 + T-rich Low_complexity Low_complexity 1 86 0 2 1207 278 198 147 59 chr12 81592787 81592802 -39664728 - PB1D10 SINE Alu 0 117 106 2 1207 925 138 0 33 chr12 81592802 81592952 -39664578 - B1_Mus1 SINE Alu -3 145 1 2 1207 278 198 147 59 chr12 81592952 81593038 -39664492 - PB1D10 SINE Alu -12 105 7 2 1207 1259 34 0 0 chr12 81594050 81594197 -39663333 + B1_Mus2 SINE Alu 1 147 0 2 1207 180 0 0 0 chr12 81594197 81594217 -39663313 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1207 585 269 17 70 chr12 81594223 81594395 -39663135 + RSINE1 SINE B4 3 165 0 2 1207 1009 137 42 42 chr12 81594417 81594607 -39662923 - B2_Mm2 SINE B2 -5 190 1 2 1207 1038 124 0 0 chr12 81594639 81594784 -39662746 + B1_Mus2 SINE Alu 2 146 -1 2 1207 1125 105 71 11 chr12 81594787 81594970 -39662560 + B2_Mm2 SINE B2 2 195 0 2 1207 360 316 31 31 chr12 81595067 81595227 -39662303 + RSINE1 SINE B4 2 161 -4 2 1207 189 0 0 0 chr12 81596201 81596222 -39661308 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 1207 1160 82 0 0 chr12 81596238 81596385 -39661145 - B1_Mus2 SINE Alu 0 147 1 2 1207 546 211 18 0 chr12 81596484 81596598 -39660932 + B1_Mur4 SINE Alu 35 150 0 2 1207 1621 41 0 15 chr12 81597268 81597464 -39660066 + B2_Mm1a SINE B2 1 193 0 2 1207 1157 42 7 7 chr12 81597497 81597642 -39659888 + B1_Mus2 SINE Alu 2 146 -1 2 1207 356 297 74 52 chr12 81599440 81599671 -39657859 - MamRep564 Unknown Unknown -8 349 114 2 1207 294 298 53 11 chr12 81600012 81600107 -39657423 + B1F2 SINE Alu 1 99 -50 2 1207 675 169 8 0 chr12 81600265 81600383 -39657147 + B1_Mm SINE Alu 28 146 -1 2 1207 35 54 0 0 chr12 81600389 81600445 -39657085 + AT_rich Low_complexity Low_complexity 1 56 0 2 1207 620 272 7 0 chr12 81600572 81600708 -39656822 + ID_B1 SINE B4 88 224 0 2 1207 38 51 0 0 chr12 81601162 81601221 -39656309 + AT_rich Low_complexity Low_complexity 1 59 0 2 1207 220 250 146 11 chr12 81601623 81601712 -39655818 - RSINE1 SINE B4 -50 115 15 2 1207 452 114 125 0 chr12 81601844 81601932 -39655598 + RLTR47_MM LTR ERV1 351 449 -83 2 1207 1462 63 16 5 chr12 81602515 81602705 -39654825 - B2_Mm2 SINE B2 -2 193 2 2 1207 1172 48 0 26 chr12 81603029 81603180 -39654350 + B1_Mus2 SINE Alu 1 147 0 2 1207 653 312 40 42 chr12 81603204 81603513 -39654017 + MTE2a LTR MaLR 46 364 -55 2 1207 324 214 28 14 chr12 81603713 81603784 -39653746 + ID4_ SINE ID 2 73 -10 2 1207 557 239 9 0 chr12 81603844 81603953 -39653577 + PB1D7 SINE Alu 11 120 0 2 1207 959 219 41 0 chr12 81603957 81604153 -39653377 + B3 SINE B2 1 204 -12 2 1207 479 229 46 0 chr12 81604516 81604625 -39652905 - B1_Mur1 SINE Alu -17 132 19 2 1207 800 157 0 35 chr12 81604637 81604650 -39652880 - B1_Mur3 SINE Alu -1 148 139 2 1207 2223 103 6 50 chr12 81604650 81604987 -39652543 + ORR1A3 LTR MaLR 5 326 0 2 1207 324 0 0 0 chr12 81604987 81605023 -39652507 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1207 800 157 0 35 chr12 81605023 81605153 -39652377 - B1_Mur3 SINE Alu -11 138 10 2 1207 303 279 0 37 chr12 81606183 81606265 -39651265 - L1ME2 LINE L1 -20 6144 6066 2 1207 293 210 0 0 chr12 81606325 81606387 -39651143 + B1_Mur1 SINE Alu 85 146 -3 2 1207 299 242 61 0 chr12 81606405 81606471 -39651059 + ID4 SINE ID 3 72 -11 2 1207 200 59 29 0 chr12 81606499 81606533 -39650997 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1207 864 50 8 0 chr12 81606535 81606655 -39650875 - B1_Mus2 SINE Alu 0 147 27 2 1207 1104 191 16 0 chr12 81606895 81607089 -39650441 - B3 SINE B2 -19 197 1 2 1207 816 114 7 48 chr12 81607291 81607438 -39650092 + B1_Mus1 SINE Alu 8 148 0 2 1207 450 292 149 32 chr12 81609870 81610118 -39647412 - B4A SINE B4 -14 278 2 2 1207 429 20 0 0 chr12 81610162 81610212 -39647318 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1207 1088 79 0 0 chr12 81610463 81610602 -39646928 - B1_Mus1 SINE Alu -8 140 2 3 1207 259 284 15 0 chr12 81610603 81610670 -39646860 - B3 SINE B2 -147 69 2 3 1207 245 284 24 47 chr12 81610688 81610699 -39646831 - B4A SINE B4 -116 176 94 3 1207 336 284 0 0 chr12 81610699 81610773 -39646757 - PB1D7 SINE Alu -38 82 9 3 1207 184 273 197 0 chr12 81612074 81612140 -39645390 + L2a LINE L2 3326 3404 -22 3 1207 237 363 39 19 chr12 81612820 81612924 -39644606 + L2c LINE L2 3258 3363 -24 3 1207 1298 93 16 0 chr12 81613494 81613677 -39643853 - B2_Mm1t SINE B2 -7 186 1 3 1207 2698 129 9 30 chr12 81613700 81614130 -39643400 - MTC LTR MaLR 0 421 1 3 1207 635 136 52 58 chr12 81614130 81614302 -39643228 - MTC-int LTR MaLR 0 1258 1088 3 1207 1027 125 0 0 chr12 81614303 81614447 -39643083 + B2_Mm2 SINE B2 1 144 -51 3 1207 180 0 0 0 chr12 81614455 81614475 -39643055 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 3 1207 6092 146 34 29 chr12 81614477 81615560 -39641970 - MTC-int LTR MaLR -163 1095 7 3 1207 551 243 35 56 chr12 81615868 81616012 -39641518 + RSINE1 SINE B4 8 148 -17 3 1207 309 264 174 43 chr12 81616066 81616319 -39641211 + RSINE1 SINE B4 1 281 -11 3 1207 287 91 36 0 chr12 81616354 81616409 -39641121 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 3 1207 1454 80 5 0 chr12 81617065 81617253 -39640277 - B2_Mm1a SINE B2 -4 189 1 3 1207 211 258 70 0 chr12 81617267 81617346 -39640184 - MIRb SINE MIR -68 200 106 3 1207 307 120 0 39 chr12 81618867 81618919 -39638611 + U3 snRNA snRNA 1 50 -167 3 1207 378 0 0 0 chr12 81621397 81621439 -39636091 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1207 547 130 24 16 chr12 81623645 81623770 -39633760 + CT-rich Low_complexity Low_complexity 4 129 0 3 1207 466 250 0 0 chr12 81623830 81623914 -39633616 - PB1D10 SINE Alu -32 85 2 3 1207 398 297 76 61 chr12 81625392 81625589 -39631941 + MER2 DNA MER2_type 7 206 -139 3 1207 697 264 65 20 chr12 81625604 81625805 -39631725 + B3 SINE B2 7 216 0 3 1207 317 184 105 84 chr12 81625862 81625888 -39631642 - PB1D10 SINE Alu 0 117 86 3 1207 234 0 0 0 chr12 81625888 81625914 -39631616 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 3 1207 317 184 105 84 chr12 81625914 81625982 -39631548 - PB1D10 SINE Alu -32 85 21 3 1207 1135 22 73 0 chr12 81626016 81626153 -39631377 + B1_Mm SINE Alu 1 147 0 3 1207 273 109 0 0 chr12 81626155 81626201 -39631329 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1207 303 85 0 0 chr12 81626285 81626332 -39631198 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1207 220 208 57 0 chr12 81626428 81626481 -39631049 + L3 LINE CR1 4216 4271 -218 3 1207 186 296 70 0 chr12 81626971 81627042 -39630488 + L3 LINE CR1 124 199 -4290 3 1207 207 0 0 0 chr12 81627191 81627214 -39630316 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1207 712 276 165 46 chr12 81628190 81628645 -39628885 - L2a LINE L2 0 3426 2918 3 1207 251 302 66 16 chr12 81628654 81628775 -39628755 + Tigger15a DNA TcMar 505 631 -84 3 1207 596 200 0 0 chr12 81630800 81630910 -39626620 + Charlie5 DNA MER1_type 18 127 -2497 3 1207 660 271 79 11 chr12 81630908 81631173 -39626357 + Charlie5 DNA MER1_type 2235 2517 -107 3 1207 361 226 26 94 chr12 81631295 81631412 -39626118 + Charlie5 DNA MER1_type 2516 2624 0 3 1207 242 277 215 0 chr12 81631761 81631891 -39625639 + MER117 DNA MER1_type 3 160 -37 3 1207 303 28 0 0 chr12 81632021 81632057 -39625473 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1207 273 255 0 0 chr12 81632075 81632126 -39625404 - RSINE1 SINE B4 -22 143 93 3 1207 230 209 0 0 chr12 81632105 81632148 -39625382 - B4 SINE B4 -202 90 48 3 1207 397 312 71 7 chr12 81632344 81632499 -39625031 + MIR SINE MIR 77 241 -21 3 1207 247 259 73 65 chr12 81632732 81632856 -39624674 - MIRb SINE MIR -60 208 84 3 1207 569 271 23 0 chr12 81633264 81633397 -39624133 + ID_B1 SINE B4 89 224 0 3 1207 271 288 116 25 chr12 81633563 81633684 -39623846 - RSINE1 SINE B4 -31 134 3 3 1207 283 284 45 11 chr12 81633964 81634053 -39623477 - MIR SINE MIR -156 106 15 3 1207 366 252 105 39 chr12 81634970 81635123 -39622407 - MIR3 SINE MIR -41 167 5 3 1207 232 307 40 81 chr12 81636344 81636468 -39621062 + MT2B LTR ERVL 120 238 -363 3 1207 619 256 22 8 chr12 81636386 81636520 -39621010 + ID_B1 SINE B4 79 214 -10 3 1207 354 281 62 0 chr12 81636520 81636616 -39620914 + RSINE1 SINE B4 5 106 -59 3 1207 1126 183 40 0 chr12 81636991 81637193 -39620337 + B3 SINE B2 1 210 -6 3 1207 682 216 216 0 chr12 81637714 81637890 -39619640 - ID_B1 SINE B4 0 224 11 3 1207 21 0 0 0 chr12 81638494 81638515 -39619015 + AT_rich Low_complexity Low_complexity 1 21 0 3 1207 363 312 182 34 chr12 81638522 81638731 -39618799 - MIRb SINE MIR -3 265 26 3 1207 425 253 35 0 chr12 81640213 81640300 -39617230 + B1F SINE Alu 13 102 -47 3 1207 198 0 0 0 chr12 81640307 81640329 -39617201 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1207 1085 49 7 0 chr12 81640344 81640488 -39617042 + (GAA)n Simple_repeat Simple_repeat 3 147 0 3 1207 418 286 84 0 chr12 81640554 81640673 -39616857 + B4A SINE B4 164 292 0 3 1207 214 82 20 39 chr12 81640911 81640962 -39616568 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 3 1207 1178 71 0 0 chr12 81640962 81641103 -39616427 - B1_Mus2 SINE Alu -2 145 5 3 1207 248 252 142 4 chr12 81641106 81641202 -39616328 - PB1D7 SINE Alu -1 116 7 3 1207 231 329 39 64 chr12 81641142 81641298 -39616232 - ID_B1 SINE B4 -72 152 1 3 1207 367 301 0 0 chr12 81641437 81641530 -39616000 - ID_B1 SINE B4 0 224 132 3 1207 280 282 185 17 chr12 81641530 81641555 -39615975 - B1_Mus1 SINE Alu -1 146 9 3 1207 1087 57 28 7 chr12 81641581 81641722 -39615808 + B1_Mus1 SINE Alu 3 146 -2 3 1207 1138 197 35 0 chr12 81641777 81641980 -39615550 - B3 SINE B2 -5 211 2 3 1207 273 192 13 76 chr12 81642007 81642086 -39615444 - PB1D10 SINE Alu -16 101 28 3 1207 327 286 95 0 chr12 81642086 81642191 -39615339 - HAL1-3A_ME LINE L1 -768 2090 1976 3 1207 586 306 75 49 chr12 81642194 81642459 -39615071 - B4A SINE B4 -2 290 19 3 1207 1138 83 14 0 chr12 81642742 81642887 -39614643 + B1_Mus1 SINE Alu 2 148 0 3 1207 443 211 425 12 chr12 81642974 81643228 -39614302 + MTE2a LTR MaLR 1 359 -20 3 1207 352 245 116 11 chr12 81643305 81643400 -39614130 + PB1D10 SINE Alu 10 114 -3 3 1207 1336 87 5 16 chr12 81643491 81643677 -39613853 - B2_Mm1a SINE B2 -9 184 1 3 1207 246 235 47 12 chr12 81643686 81643772 -39613758 + CT-rich Low_complexity Low_complexity 1 89 0 3 1207 455 194 0 14 chr12 81643779 81643852 -39613678 - ID4_ SINE ID -11 72 1 3 1207 275 331 8 32 chr12 81643869 81643994 -39613536 - L1MC LINE L1 -2054 5828 5707 3 1207 464 72 14 0 chr12 81644061 81644130 -39613400 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1207 395 256 0 12 chr12 81644330 81644413 -39613117 - PB1 SINE Alu -8 119 38 3 1207 400 215 126 21 chr12 81644556 81644644 -39612886 + B1F2 SINE Alu 13 110 -39 3 1207 356 335 106 13 chr12 81644644 81644795 -39612735 + RSINE1 SINE B4 1 165 0 3 1207 21 0 0 0 chr12 81644800 81644821 -39612709 + AT_rich Low_complexity Low_complexity 1 21 0 3 1207 299 240 53 0 chr12 81644939 81645014 -39612516 + B1F1 SINE Alu 17 95 -54 3 1207 1191 49 14 0 chr12 81645118 81645261 -39612269 - B1_Mus2 SINE Alu 0 147 3 3 1207 898 276 91 8 chr12 81645313 81645576 -39611954 - B4A SINE B4 -5 287 3 3 1207 594 326 29 29 chr12 81645761 81646004 -39611526 - MIR SINE MIR -15 247 5 3 1207 506 219 19 19 chr12 81646999 81647106 -39610424 + PB1D10 SINE Alu 10 116 -1 3 1207 630 230 14 22 chr12 81647112 81647250 -39610280 + B1_Mur1 SINE Alu 1 137 -12 3 1207 378 0 0 0 chr12 81647250 81647292 -39610238 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1207 728 283 84 20 chr12 81647469 81647671 -39609859 - ID_B1 SINE B4 -8 216 2 3 1207 267 323 90 47 chr12 81647675 81647886 -39609644 + L2 LINE L2 1959 2178 -1241 3 1207 372 255 89 18 chr12 81648324 81648436 -39609094 + RSINE1 SINE B4 15 134 -31 3 1207 574 331 6 0 chr12 81648494 81648657 -39608873 - RSINE1 SINE B4 -1 164 1 3 1207 475 278 27 40 chr12 81648695 81648845 -39608685 + B1F SINE Alu 1 148 -1 3 1207 765 259 106 28 chr12 81648876 81649130 -39608400 + B4A SINE B4 6 279 -13 3 1207 335 326 128 27 chr12 81649778 81649926 -39607604 + RSINE1 SINE B4 3 165 0 3 1207 360 321 0 0 chr12 81650018 81650099 -39607431 - ID2 SINE ID -2 81 1 3 1207 547 236 31 23 chr12 81650120 81650250 -39607280 - B1F SINE Alu -17 132 2 3 1207 26 0 0 0 chr12 81651249 81651275 -39606255 + AT_rich Low_complexity Low_complexity 1 26 0 3 1207 3837 137 78 11 chr12 81651275 81651927 -39605603 - Lx9 LINE L1 -5 7639 6944 3 1207 644 238 7 37 chr12 81651968 81652103 -39605427 + RSINE1 SINE B4 2 132 -33 3 1207 684 135 0 0 chr12 81652143 81652254 -39605276 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 3 1207 1185 48 0 52 chr12 81652341 81652496 -39605034 + B1_Mus2 SINE Alu 1 147 0 3 1207 27 0 0 0 chr12 81652496 81652523 -39605007 + AT_rich Low_complexity Low_complexity 1 27 0 3 1207 212 261 0 0 chr12 81652816 81652862 -39604668 - ID4 SINE ID 0 83 38 3 1207 571 304 7 13 chr12 81652942 81653092 -39604438 - RSINE1 SINE B4 -15 150 2 3 1207 1052 130 0 7 chr12 81653130 81653277 -39604253 - B1_Mus2 SINE Alu -1 146 1 4 1207 198 54 122 0 chr12 81653288 81653362 -39604168 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 1207 554 160 30 0 chr12 81653379 81653510 -39604020 + (TA)n Simple_repeat Simple_repeat 1 135 0 4 1207 797 236 39 0 chr12 81653727 81653905 -39603625 + B3 SINE B2 32 216 0 4 1207 279 54 0 0 chr12 81654429 81654466 -39603064 + (C)n Simple_repeat Simple_repeat 1 37 0 4 1207 1433 131 14 5 chr12 81654534 81654756 -39602774 - URR1A DNA MER1_type -2 224 1 4 1207 1046 213 5 5 chr12 81654819 81655031 -39602499 - B3 SINE B2 0 216 5 4 1207 468 192 0 0 chr12 81655466 81655544 -39601986 - ID4_ SINE ID -4 79 2 4 1207 393 166 7 0 chr12 81655758 81655833 -39601697 - ORR1D2 LTR MaLR -14 405 307 4 1207 416 197 0 0 chr12 81656033 81656104 -39601426 + B3A SINE B2 1 71 -127 4 1207 1175 256 35 18 chr12 81656102 81656384 -39601146 - ORR1D2 LTR MaLR -62 308 22 4 1207 414 0 0 0 chr12 81656415 81656461 -39601069 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1207 431 290 23 31 chr12 81656592 81656641 -39600889 - B4A SINE B4 -159 133 88 4 1207 207 0 0 0 chr12 81656641 81656664 -39600866 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1207 431 290 23 31 chr12 81656664 81656742 -39600788 - B4A SINE B4 -205 87 9 4 1207 493 295 74 51 chr12 81656822 81656997 -39600533 + B3A SINE B2 18 196 -2 4 1207 297 288 32 77 chr12 81657020 81657324 -39600206 - L1MB2 LINE L1 -21 6147 5849 4 1207 198 0 0 0 chr12 81657609 81657631 -39599899 + (TTAG)n Simple_repeat Simple_repeat 3 24 0 4 1207 839 64 0 26 chr12 81657631 81657744 -39599786 - B1_Mus1 SINE Alu -2 146 37 4 150 365 292 44 34 chr12 81657804 81657923 -39599607 + PB1D10 SINE Alu 1 120 0 4 1208 189 147 0 0 chr12 81659204 81659238 -39598292 + (CGA)n Simple_repeat Simple_repeat 3 36 0 4 1208 1472 64 0 16 chr12 81660012 81660202 -39597328 - B2_Mm2 SINE B2 -7 188 2 4 1208 426 306 0 0 chr12 81660461 81660582 -39596948 - L1MA8 LINE L1 -425 5866 5746 4 1208 449 311 33 13 chr12 81660926 81661079 -39596451 + RSINE1 SINE B4 9 164 -1 4 1208 754 189 22 7 chr12 81661229 81661368 -39596162 + B1_Mur3 SINE Alu 2 142 -7 4 1208 398 231 8 0 chr12 81661370 81661487 -39596043 + GA-rich Low_complexity Low_complexity 3 120 0 4 1208 318 291 124 43 chr12 81661900 81662158 -39595372 - L1M5 LINE L1 -479 5645 5367 4 1208 1737 16 0 0 chr12 81662188 81662380 -39595150 - B2_Mm1a SINE B2 0 193 2 4 1208 492 226 10 19 chr12 81662435 81662539 -39594991 - ID_B1 SINE B4 0 224 122 4 1208 475 202 17 26 chr12 81662609 81662726 -39594804 + B3A SINE B2 2 117 -81 4 1208 201 162 0 0 chr12 81662958 81662995 -39594535 + T-rich Low_complexity Low_complexity 1 37 0 4 1208 442 83 0 27 chr12 81663146 81663220 -39594310 + (TCCC)n Simple_repeat Simple_repeat 4 75 0 4 1208 408 305 110 41 chr12 81664105 81664351 -39593179 - MLT1A1 LTR MaLR -117 291 29 4 1208 342 0 0 0 chr12 81664468 81664506 -39593024 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1208 777 253 165 24 chr12 81664718 81664973 -39592557 - B4A SINE B4 0 292 2 4 1208 290 272 83 55 chr12 81665204 81665313 -39592217 + PB1D7 SINE Alu 1 112 -8 4 1208 639 141 14 29 chr12 81665886 81666025 -39591505 + T-rich Low_complexity Low_complexity 3 139 0 4 1208 222 337 111 60 chr12 81666243 81666442 -39591088 + MIRb SINE MIR 33 241 -27 4 1208 386 342 40 0 chr12 81667230 81667379 -39590151 - MER5B DNA MER1_type -23 155 1 4 1208 314 284 214 35 chr12 81667402 81667621 -39589909 - MIRb SINE MIR -2 266 5 4 1208 534 54 0 0 chr12 81669242 81669316 -39588214 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1208 837 220 0 7 chr12 81669320 81669471 -39588059 - B3 SINE B2 -65 151 2 4 1208 595 198 175 0 chr12 81669938 81670064 -39587466 - B3 SINE B2 -4 212 65 4 1208 273 329 14 0 chr12 81670130 81670203 -39587327 - L2c LINE L2 0 3387 3314 4 1208 463 166 279 87 chr12 81670249 81670421 -39587109 - Lx8 LINE L1 -121 7352 7148 4 1208 201 245 0 20 chr12 81671809 81671859 -39585671 + L2 LINE L2 1251 1299 -2120 4 1208 274 293 13 13 chr12 81672800 81672876 -39584654 + B4A SINE B4 1 76 -216 4 1208 266 288 112 0 chr12 81672922 81673002 -39584528 + B4A SINE B4 83 171 -121 4 1208 346 335 132 16 chr12 81673507 81673825 -39583705 - L1MEe LINE L1 -3832 1022 668 4 1208 427 165 25 0 chr12 81673832 81673911 -39583619 - PB1D9 SINE Alu 0 120 40 4 1208 276 30 0 0 chr12 81674150 81674183 -39583347 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1208 1253 41 0 0 chr12 81674193 81674339 -39583191 - B1_Mus2 SINE Alu 0 147 2 4 1208 387 0 0 0 chr12 81674737 81674780 -39582750 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1208 508 245 44 60 chr12 81674791 81674922 -39582608 - B1F SINE Alu -13 136 10 4 1208 261 0 0 0 chr12 81675279 81675308 -39582222 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1208 694 300 13 67 chr12 81677816 81678116 -39579414 + B4A SINE B4 1 284 -8 4 1208 396 0 0 0 chr12 81678144 81678188 -39579342 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1208 238 338 120 0 chr12 81679078 81679211 -39578319 - MIRc SINE MIR -97 171 23 4 1208 424 208 14 120 chr12 81679267 81679409 -39578121 + MT2B LTR ERVL 138 264 -337 4 1208 1112 44 7 0 chr12 81679305 81679442 -39578088 + B1_Mus1 SINE Alu 10 147 -1 4 1208 920 173 6 0 chr12 81679455 81679634 -39577896 + GA-rich Low_complexity Low_complexity 1 180 0 4 1208 434 244 0 0 chr12 81680331 81680413 -39577117 + ID4 SINE ID 2 83 0 4 1208 307 363 82 13 chr12 81680418 81680577 -39576953 + HAL1-3A_ME LINE L1 2284 2453 -405 4 1208 210 186 213 33 chr12 81681505 81681566 -39575964 + PB1 SINE Alu 3 74 -53 4 1208 228 242 76 0 chr12 81681576 81681642 -39575888 + GA-rich Low_complexity Low_complexity 2 72 0 4 1208 810 244 110 10 chr12 81681642 81681952 -39575578 + L1M4 LINE L1 5296 5636 -538 4 1208 542 252 96 86 chr12 81682653 81682849 -39574681 + MER33 DNA MER1_type 15 209 -115 4 1208 1240 61 0 0 chr12 81682849 81682996 -39574534 + B1_Mm SINE Alu 1 147 0 4 1208 542 252 96 86 chr12 81682996 81683090 -39574440 + MER33 DNA MER1_type 210 308 -16 4 1208 881 253 17 0 chr12 81683090 81683268 -39574262 - B3 SINE B2 -34 182 2 4 1208 982 101 31 25 chr12 81683292 81683454 -39574076 + URR1A DNA MER1_type 64 226 0 4 1208 668 238 56 86 chr12 81683574 81683772 -39573758 - MER3 DNA MER1_type -17 192 1 4 1208 288 224 0 107 chr12 81683921 81683943 -39573587 + L2a LINE L2 3030 3045 -381 4 1208 2033 186 16 14 chr12 81683943 81684314 -39573216 - ORR1D1 LTR MaLR -1 373 2 4 1208 288 224 0 107 chr12 81684314 81684366 -39573164 + L2a LINE L2 3046 3096 -330 4 1208 400 210 103 56 chr12 81685166 81685292 -39572238 - MIR SINE MIR -29 233 102 4 1208 321 258 65 32 chr12 81685400 81685541 -39571989 + MIRc SINE MIR 1 137 -131 4 1208 723 59 0 0 chr12 81685837 81685938 -39571592 + (CA)n Simple_repeat Simple_repeat 2 102 0 4 1208 1264 94 50 0 chr12 81687524 81687705 -39569825 - B2_Mm2 SINE B2 -1 194 5 4 1208 1216 200 0 18 chr12 81687728 81687947 -39569583 + B3 SINE B2 2 216 0 4 1208 275 290 202 61 chr12 81687963 81688191 -39569339 + L2a LINE L2 3162 3421 -5 4 1208 690 262 151 25 chr12 81688218 81688457 -39569073 + B4A SINE B4 2 270 -22 4 1208 483 48 0 0 chr12 81688461 81688523 -39569007 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1208 1141 43 21 0 chr12 81688695 81688836 -39568694 + B1_Mm SINE Alu 2 145 -2 4 1208 222 323 0 147 chr12 81688867 81688976 -39568554 + ID_B1 SINE B4 80 172 -52 4 1208 519 196 53 0 chr12 81688879 81688996 -39568534 + PB1 SINE Alu 22 220 -91 4 1208 395 238 37 65 chr12 81689003 81689111 -39568419 + B1F1 SINE Alu 12 116 -33 4 1208 457 125 11 11 chr12 81689195 81689284 -39568246 + (TG)n Simple_repeat Simple_repeat 1 89 0 4 1208 724 228 118 16 chr12 81690162 81690333 -39567197 - B3 SINE B2 -14 181 1 4 1208 417 229 60 60 chr12 81691065 81691214 -39566316 + B1F SINE Alu 1 149 0 4 1208 324 221 0 42 chr12 81691229 81691300 -39566230 + ID4_ SINE ID 15 82 -1 4 1208 1375 94 0 15 chr12 81691319 81691514 -39566016 + B2_Mm2 SINE B2 1 192 -3 4 1208 3823 58 19 2 chr12 81692352 81692819 -39564711 - MT2C_Mm LTR ERVL 0 475 1 4 1208 291 359 38 0 chr12 81694094 81694200 -39563330 + L2a LINE L2 3090 3199 -227 4 1208 225 0 0 0 chr12 81694221 81694246 -39563284 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 1208 289 43 21 21 chr12 81694247 81694295 -39563235 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1208 250 372 11 0 chr12 81694356 81694450 -39563080 + L2a LINE L2 3327 3421 -5 4 1208 226 336 122 0 chr12 81695499 81695606 -39561924 + MER91B DNA Tip100 2 121 -69 4 1208 777 300 97 8 chr12 81696307 81696566 -39560964 - B4A SINE B4 0 292 11 4 1208 710 200 0 0 chr12 81696618 81696733 -39560797 - RSINE1 SINE B4 -49 116 2 4 1208 255 352 8 39 chr12 81697937 81698067 -39559463 + LTR78 LTR ERV1 855 980 -324 4 1208 1207 36 0 0 chr12 81698753 81698890 -39558640 + B1_Mus1 SINE Alu 2 138 -10 4 1208 183 42 0 0 chr12 81698890 81698914 -39558616 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1208 257 291 48 86 chr12 81699413 81699631 -39557899 - MIRb SINE MIR -32 236 18 4 1208 239 278 109 34 chr12 81699759 81699878 -39557652 - MIR3 SINE MIR -78 130 3 4 1208 1211 57 0 0 chr12 81700764 81700904 -39556626 + B1_Mus2 SINE Alu 2 141 -6 4 1208 1189 220 50 14 chr12 81702128 81702409 -39555121 + B4A SINE B4 2 292 0 4 1208 432 0 0 0 chr12 81706142 81706190 -39551340 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1208 384 73 0 35 chr12 81706333 81706390 -39551140 + B2_Mm2 SINE B2 47 101 -94 5 1208 264 77 0 0 chr12 81706415 81706454 -39551076 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1208 2437 88 22 3 chr12 81706458 81706779 -39550751 - ORR1A2 LTR MaLR 0 327 1 5 1208 11567 109 74 25 chr12 81706779 81706851 -39550679 - ORR1A2-int LTR MaLR 0 1963 1892 5 1208 1567 28 0 22 chr12 81706851 81707036 -39550494 - B2_Mm1a SINE B2 -11 182 2 5 1208 11567 109 74 25 chr12 81707036 81708834 -39548696 - ORR1A2-int LTR MaLR -72 1891 1 5 1208 1125 83 0 0 chr12 81708834 81708979 -39548551 - ORR1A2 LTR MaLR 0 400 256 5 1208 390 90 0 288 chr12 81708941 81709066 -39548464 + MTB LTR MaLR 196 284 -116 5 1208 725 118 0 43 chr12 81709259 81709374 -39548156 - B1_Mur2 SINE Alu 0 149 40 5 1208 208 250 0 0 chr12 81709377 81709433 -39548097 + CT-rich Low_complexity Low_complexity 2 57 0 5 1208 311 161 32 47 chr12 81709436 81709514 -39548016 - PB1D9 SINE Alu -79 70 1 5 1208 639 213 8 0 chr12 81709553 81709675 -39547855 - ID_B1 SINE B4 0 224 102 5 1208 1009 188 8 155 chr12 81710240 81710492 -39547038 + B3 SINE B2 2 216 0 5 1208 523 292 8 8 chr12 81710564 81710685 -39546845 + RSINE1 SINE B4 4 124 -41 5 1208 285 222 110 40 chr12 81710754 81710839 -39546691 + PB1D10 SINE Alu 41 119 -30 5 1208 752 213 0 78 chr12 81712453 81712606 -39544924 + B1F2 SINE Alu 2 142 -7 5 1208 222 37 0 0 chr12 81712753 81712780 -39544750 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1208 286 237 0 17 chr12 81712803 81712863 -39544667 + MIRb SINE MIR 195 253 -15 5 1208 531 45 0 0 chr12 81712869 81712935 -39544595 + (TGAA)n Simple_repeat Simple_repeat 1 66 0 5 1208 183 250 37 37 chr12 81713176 81713230 -39544300 - MIRm SINE MIR -179 97 44 5 1208 381 337 92 19 chr12 81713650 81713856 -39543674 - MIR SINE MIR -36 226 6 5 1208 25 51 0 0 chr12 81713869 81713908 -39543622 + AT_rich Low_complexity Low_complexity 1 39 0 5 1208 1230 28 7 0 chr12 81713933 81714076 -39543454 + B1_Mus1 SINE Alu 5 148 0 5 1208 1266 54 0 0 chr12 81714641 81714788 -39542742 + B1_Mus2 SINE Alu 1 147 0 5 1208 490 338 65 29 chr12 81714853 81715130 -39542400 + B4A SINE B4 2 288 -4 5 1208 283 289 13 0 chr12 81715143 81715219 -39542311 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1208 262 316 90 75 chr12 81715406 81715618 -39541912 - L2a LINE L2 -29 3397 3183 5 1208 511 328 102 36 chr12 81715975 81716279 -39541251 - MLT1F2 LTR MaLR -236 324 1 5 1208 243 0 0 0 chr12 81716655 81716682 -39540848 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1208 588 246 10 0 chr12 81717209 81717333 -39540197 - B1_Mus1 SINE Alu -21 127 1 5 1208 253 287 62 21 chr12 81717366 81717462 -39540068 - PB1D7 SINE Alu -20 100 1 5 1208 973 226 53 0 chr12 81717471 81717679 -39539851 + B4A SINE B4 2 220 -72 5 1208 432 250 54 0 chr12 81717686 81717778 -39539752 + RSINE1 SINE B4 16 112 -53 5 1208 258 149 0 0 chr12 81717820 81717833 -39539697 + (TAAA)n Simple_repeat Simple_repeat 3 15 0 5 1208 885 170 7 0 chr12 81717833 81717974 -39539556 + B1_Mur2 SINE Alu 1 142 -7 5 1208 258 149 0 0 chr12 81717974 81718007 -39539523 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 5 1208 315 282 0 40 chr12 81718007 81718081 -39539449 + B4A SINE B4 218 288 -4 5 1208 279 262 14 0 chr12 81719324 81719398 -39538132 + B1F1 SINE Alu 4 81 -36 5 1208 185 279 23 0 chr12 81720575 81720618 -39536912 - MER5A DNA MER1_type -33 156 113 5 1208 929 262 19 9 chr12 81720725 81720937 -39536593 - ID_B1 SINE B4 -7 217 4 5 1208 723 208 0 0 chr12 81721043 81721173 -39536357 - B1_Mur2 SINE Alu -19 130 1 5 1208 24 0 0 0 chr12 81721182 81721206 -39536324 + AT_rich Low_complexity Low_complexity 1 24 0 5 1208 307 256 0 60 chr12 81721208 81721291 -39536239 + B4A SINE B4 4 81 -211 5 1208 1198 68 7 0 chr12 81721324 81721471 -39536059 + B1_Mus1 SINE Alu 1 148 0 5 1208 206 32 0 31 chr12 81721475 81721507 -39536023 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1208 655 247 95 21 chr12 81721509 81721699 -39535831 + B4A SINE B4 86 289 -3 5 1208 1258 30 122 23 chr12 81721752 81721924 -39535606 + B2_Mm1a SINE B2 2 190 -3 5 1208 30 27 0 0 chr12 81721955 81721992 -39535538 + AT_rich Low_complexity Low_complexity 1 37 0 5 1208 229 274 260 0 chr12 81722211 81722284 -39535246 + FLAM_A SINE Alu 23 115 -12 5 1208 180 0 0 0 chr12 81722284 81722304 -39535226 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 5 1208 1136 49 14 0 chr12 81722371 81722515 -39535015 - B1_Mus2 SINE Alu -1 146 1 5 1208 1103 74 0 0 chr12 81722859 81722994 -39534536 + B1_Mus2 SINE Alu 1 135 -12 5 1208 206 0 69 0 chr12 81722995 81723024 -39534506 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1208 238 176 67 0 chr12 81723114 81723233 -39534297 + (TA)n Simple_repeat Simple_repeat 1 127 0 5 1208 202 175 49 12 chr12 81723268 81723349 -39534181 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 1208 693 249 45 45 chr12 81723349 81723551 -39533979 - B3 SINE B2 -13 203 2 5 1208 210 154 0 25 chr12 81723631 81723650 -39533880 + polypyrimidine Low_complexity Low_complexity 22 40 0 5 1208 1249 34 0 0 chr12 81723650 81723796 -39533734 - B1_Mus2 SINE Alu 0 147 2 5 1208 210 154 0 25 chr12 81723796 81723816 -39533714 + polypyrimidine Low_complexity Low_complexity 2 21 0 5 1208 369 250 60 0 chr12 81723819 81723919 -39533611 - U6 snRNA snRNA 0 107 2 5 1208 795 247 10 54 chr12 81723929 81723959 -39533571 - B3A SINE B2 -1 197 176 5 1208 1365 75 37 0 chr12 81723959 81724146 -39533384 + B2_Mm2 SINE B2 2 195 0 5 1208 351 0 0 0 chr12 81724147 81724186 -39533344 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1208 795 247 10 54 chr12 81724186 81724358 -39533172 - B3A SINE B2 -23 175 2 5 1208 301 298 143 16 chr12 81724509 81724635 -39532895 + MTD LTR MaLR 1 142 -277 5 1208 422 82 0 0 chr12 81724641 81724702 -39532828 - ORR1A3 LTR MaLR -8 318 258 5 1208 465 136 50 17 chr12 81724770 81724949 -39532581 + RMER17C LTR ERVK 85 269 -141 5 1208 795 68 246 0 chr12 81724956 81725074 -39532456 - B1_Mus2 SINE Alu 0 147 1 5 1208 1830 182 3 24 chr12 81725085 81725418 -39532112 - ORR1B1 LTR MaLR -68 326 1 5 1208 578 199 44 37 chr12 81725554 81725715 -39531815 + MTD LTR MaLR 218 419 0 5 1208 239 86 0 0 chr12 81725892 81725927 -39531603 + B3 SINE B2 1 35 -181 5 1208 969 80 7 0 chr12 81725928 81726065 -39531465 + B1_Mm SINE Alu 10 147 0 5 1208 1150 67 0 18 chr12 81726073 81726240 -39531290 + B2_Mm2 SINE B2 27 190 -5 5 1208 227 262 67 106 chr12 81726331 81726357 -39531173 - B2_Mm2 SINE B2 -11 184 160 5 1208 372 94 0 0 chr12 81726357 81726410 -39531120 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1208 524 262 67 106 chr12 81726410 81726562 -39530968 - B3A SINE B2 -32 166 13 5 1208 1083 92 0 0 chr12 81726580 81726733 -39530797 + (TG)n Simple_repeat Simple_repeat 2 154 0 5 1208 837 70 0 0 chr12 81726733 81726847 -39530683 - B1_Mus2 SINE Alu -32 115 2 5 1208 1202 48 0 0 chr12 81726941 81727087 -39530443 + B1_Mm SINE Alu 2 147 0 5 1208 268 172 303 0 chr12 81727102 81727201 -39530329 + MTD LTR MaLR 135 263 -156 5 1208 1852 114 44 0 chr12 81727259 81727557 -39529973 - ORR1A4 LTR MaLR 0 329 19 5 1208 225 0 0 0 chr12 81727557 81727582 -39529948 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1208 973 66 72 14 chr12 81727596 81727735 -39529795 + B1_Mus1 SINE Alu 2 148 0 5 1208 1128 73 30 6 chr12 81727778 81727943 -39529587 - B2_Mm2 SINE B2 -26 169 1 5 1208 405 214 112 35 chr12 81728355 81728471 -39529059 - Lx9 LINE L1 -262 7382 7258 5 1208 520 168 104 17 chr12 81728498 81728613 -39528917 - B1_Mur4 SINE Alu -19 131 7 5 1208 588 139 147 10 chr12 81728623 81728725 -39528805 - Lx9 LINE L1 -397 7247 7132 5 1208 703 214 49 6 chr12 81728724 81728907 -39528623 + Lx9 LINE L1 7453 7643 -1 5 1208 673 256 82 55 chr12 81729006 81729188 -39528342 + B4 SINE B4 10 196 -96 5 1208 315 0 0 0 chr12 81729208 81729243 -39528287 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1208 269 85 0 60 chr12 81729380 81729430 -39528100 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 5 1208 330 258 71 10 chr12 81730020 81730118 -39527412 + PB1 SINE Alu 21 124 -3 5 1208 3212 40 45 0 chr12 81730584 81730963 -39526567 - MTA_Mm LTR MaLR 0 396 1 5 1208 304 127 0 35 chr12 81731185 81731242 -39526288 - B2_Mm2 SINE B2 -94 101 47 5 1208 1349 80 11 0 chr12 81731274 81731450 -39526080 - B2_Mm1t SINE B2 -14 179 2 5 1208 269 309 140 28 chr12 81731480 81731623 -39525907 - LTR87 LTR ERVL? -109 515 357 5 1208 353 309 73 0 chr12 81731991 81732127 -39525403 + B1F1 SINE Alu 4 149 0 5 1208 884 65 186 0 chr12 81732390 81732514 -39525016 - B1_Mus2 SINE Alu 0 147 1 5 1208 1141 88 0 17 chr12 81732519 81732693 -39524837 - B2_Mm2 SINE B2 -23 172 2 5 1208 528 284 8 0 chr12 81733068 81733195 -39524335 - RSINE1 SINE B4 -34 131 4 5 1208 705 45 304 0 chr12 81733483 81733595 -39523935 - B1_Mm SINE Alu -1 146 1 5 1208 1334 60 60 0 chr12 81733680 81733862 -39523668 - B2_Mm1t SINE B2 0 193 1 5 1208 319 256 172 8 chr12 81734543 81734677 -39522853 + Tigger5 DNA MER2_type 38 193 -2213 5 1208 1090 80 100 22 chr12 81735622 81735802 -39521728 - B2_Mm2 SINE B2 0 195 2 5 1208 841 193 56 65 chr12 81736343 81736559 -39520971 + B3 SINE B2 3 216 0 5 1208 665 159 135 0 chr12 81736593 81736719 -39520811 + B1_Mur3 SINE Alu 3 145 -4 5 1208 776 199 0 60 chr12 81736766 81736948 -39520582 + B3 SINE B2 45 215 -1 5 1208 870 112 29 22 chr12 81736987 81737124 -39520406 + B1_Mus1 SINE Alu 1 138 -10 5 1208 1657 36 0 0 chr12 81737198 81737391 -39520139 - B2_Mm1a SINE B2 0 193 1 5 1208 237 246 33 0 chr12 81737633 81737694 -39519836 - tRNA-Ala-GCY_ tRNA tRNA -8 67 5 5 1208 220 222 13 77 chr12 81737718 81737796 -39519734 - PB1 SINE Alu -40 77 5 6 1208 456 181 35 95 chr12 81738898 81739014 -39518516 - PB1D9 SINE Alu -11 109 1 6 1208 21 57 0 0 chr12 81739026 81739061 -39518469 + AT_rich Low_complexity Low_complexity 1 35 0 6 1208 1292 97 6 0 chr12 81739061 81739236 -39518294 - B2_Mm2 SINE B2 -18 177 2 6 1208 413 227 167 8 chr12 81739584 81739704 -39517826 + ID_B1 SINE B4 80 218 -6 6 1208 341 250 42 92 chr12 81739918 81739931 -39517599 + MT2B LTR ERVL 145 151 -450 6 1208 730 150 8 23 chr12 81739931 81740061 -39517469 + B1_Mur3 SINE Alu 1 128 -21 6 1208 423 255 168 58 chr12 81740070 81740278 -39517252 - B4 SINE B4 -55 237 7 6 1208 633 263 105 0 chr12 81740424 81740633 -39516897 + L1M4 LINE L1 4110 4340 -1806 6 1208 295 263 26 0 chr12 81740777 81740853 -39516677 - ID4 SINE ID -2 81 4 6 1208 366 228 69 10 chr12 81740902 81741004 -39516526 - B1F SINE Alu -22 127 20 6 1208 1160 63 0 0 chr12 81741672 81741814 -39515716 + B1_Mus2 SINE Alu 5 146 -1 6 1208 359 290 84 35 chr12 81742680 81742823 -39514707 - MER20 DNA MER1_type -19 200 51 6 1208 1181 75 7 0 chr12 81742891 81743038 -39514492 + B1_Mus1 SINE Alu 1 148 0 6 1208 803 233 35 0 chr12 81743689 81743891 -39513639 + B3 SINE B2 5 213 -3 6 1208 895 151 16 38 chr12 81743921 81744107 -39513423 + B3A SINE B2 12 193 -5 6 1208 407 142 26 16 chr12 81746518 81746603 -39510927 + B1_Mur4 SINE Alu 16 99 -215 6 1208 1117 174 20 0 chr12 81747060 81747261 -39510269 - B3 SINE B2 0 216 12 6 1208 22 0 0 0 chr12 81747276 81747298 -39510232 + AT_rich Low_complexity Low_complexity 1 22 0 6 1208 290 269 38 13 chr12 81747317 81747396 -39510134 + ID4 SINE ID 3 83 0 6 1208 234 0 0 0 chr12 81747760 81747786 -39509744 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1208 380 250 20 0 chr12 81747801 81747901 -39509629 - B3 SINE B2 -11 205 104 6 1208 758 172 8 0 chr12 81747931 81748065 -39509465 - B1_Mur4 SINE Alu -1 149 15 6 1208 261 236 17 52 chr12 81748631 81748747 -39508783 - MER5C DNA MER1_type -107 206 95 6 1208 455 203 84 8 chr12 81748941 81749060 -39508470 + B1F SINE Alu 22 149 0 6 1208 1064 171 106 12 chr12 81749060 81749314 -39508216 + Lx9 LINE L1 7367 7644 0 6 1208 557 236 146 0 chr12 81750239 81750383 -39507147 - Lx8 LINE L1 -1027 6446 6282 6 1208 1032 149 25 25 chr12 81750385 81750584 -39506946 - MTC LTR MaLR 0 421 223 6 1208 633 27 0 0 chr12 81750590 81750665 -39506865 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 6 1208 816 104 0 53 chr12 81750742 81750773 -39506757 - B2_Mm2 SINE B2 -68 127 102 6 1208 2317 105 6 0 chr12 81750773 81751098 -39506432 + ORR1A2 LTR MaLR 1 327 0 6 1208 816 104 0 53 chr12 81751098 81751198 -39506332 - B2_Mm2 SINE B2 -94 101 3 6 1208 1084 155 10 24 chr12 81751212 81751417 -39506113 - MTC LTR MaLR -210 211 10 6 1208 246 289 91 13 chr12 81751434 81751511 -39506019 - Lx8 LINE L1 -1194 6279 6197 6 1208 1102 88 0 26 chr12 81752434 81752585 -39504945 + B1_Mus1 SINE Alu 2 148 0 6 1208 305 100 20 0 chr12 81752586 81752636 -39504894 + (GAAAA)n Simple_repeat Simple_repeat 4 54 0 6 1208 355 204 112 11 chr12 81752637 81752726 -39504804 - PB1D9 SINE Alu -14 106 9 6 1208 357 86 0 0 chr12 81753269 81753327 -39504203 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1208 562 250 121 65 chr12 81753328 81753559 -39503971 - B4A SINE B4 -48 244 1 6 1208 238 278 96 61 chr12 81753703 81753818 -39503712 + PB1D9 SINE Alu 2 120 0 6 1208 661 208 0 8 chr12 81753819 81753945 -39503585 + B1_Mus2 SINE Alu 2 126 -21 6 1208 1744 16 0 0 chr12 81754329 81754522 -39503008 + B2_Mm1a SINE B2 1 193 0 6 1208 795 291 39 13 chr12 81754537 81754770 -39502760 + MIR SINE MIR 20 258 -4 6 1208 1321 260 110 103 chr12 81754946 81755709 -39501821 + LTR41 LTR ERVL 1 768 0 6 1208 426 229 62 27 chr12 81755791 81755903 -39501627 + PB1 SINE Alu 5 120 -7 6 1208 273 239 44 15 chr12 81756017 81756085 -39501445 - MER102c DNA MER1_type -181 150 81 6 1208 778 209 11 26 chr12 81756346 81756524 -39501006 + B3 SINE B2 39 210 -6 6 1208 1388 93 16 0 chr12 81756534 81756717 -39500813 - B2_Mm2 SINE B2 -9 186 1 6 1208 30 59 0 0 chr12 81756721 81756772 -39500758 + AT_rich Low_complexity Low_complexity 1 51 0 6 1208 368 305 45 8 chr12 81757065 81757197 -39500333 - B3A SINE B2 -35 163 27 6 1208 1009 76 0 14 chr12 81757208 81757354 -39500176 - B1_Mus1 SINE Alu 0 148 5 6 1208 335 229 12 24 chr12 81757403 81757488 -39500042 - PB1D9 SINE Alu 0 120 37 6 1208 681 291 62 5 chr12 81757489 81757700 -39499830 - ID_B1 SINE B4 0 224 2 6 1208 690 194 214 46 chr12 81757721 81757894 -39499636 - B3 SINE B2 -11 205 4 6 1208 1812 100 170 18 chr12 81758023 81758358 -39499172 - ORR1B1 LTR MaLR -8 386 1 6 1208 243 146 0 0 chr12 81758385 81758426 -39499104 + (TGG)n Simple_repeat Simple_repeat 1 41 0 6 1208 720 193 37 7 chr12 81758428 81758564 -39498966 - B1_Mus1 SINE Alu -7 141 2 6 1208 899 99 7 21 chr12 81758831 81758976 -39498554 + B1_Mur4 SINE Alu 5 147 -3 6 1208 509 159 120 70 chr12 81758988 81759130 -39498400 + B1_Mur2 SINE Alu 1 149 0 6 1208 234 0 0 0 chr12 81759452 81759478 -39498052 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 6 1208 373 173 298 0 chr12 81759479 81759583 -39497947 - B1_Mus1 SINE Alu -8 140 6 6 1208 1140 135 45 0 chr12 81760832 81761032 -39496498 + MTC LTR MaLR 1 209 -212 6 1208 1190 55 0 0 chr12 81761032 81761178 -39496352 + B1_Mus2 SINE Alu 2 147 0 6 1208 692 235 56 78 chr12 81761178 81761208 -39496322 + MTC LTR MaLR 196 226 -174 6 1208 28 0 0 0 chr12 81761208 81761236 -39496294 + AT_rich Low_complexity Low_complexity 1 28 0 6 1208 415 76 190 0 chr12 81761236 81761315 -39496215 + MTC LTR MaLR 196 289 -132 6 1208 390 42 0 0 chr12 81761456 81761504 -39496026 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1208 318 80 0 0 chr12 81761505 81761555 -39495975 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1208 729 264 81 20 chr12 81761601 81761848 -39495682 - B4A SINE B4 -6 286 25 6 1208 288 286 88 0 chr12 81762029 81762120 -39495410 + B1F SINE Alu 10 108 -41 6 1208 1159 144 59 5 chr12 81762213 81762415 -39495115 - B3 SINE B2 -1 215 3 6 1208 251 307 110 16 chr12 81762433 81762615 -39494915 + Lx8 LINE L1 7242 7440 -33 6 1208 628 132 0 0 chr12 81762630 81762721 -39494809 + 4.5SRNA scRNA scRNA 1 91 -3 6 1208 1397 55 16 32 chr12 81762810 81762998 -39494532 + B2_Mm2 SINE B2 2 186 -9 6 1208 725 251 116 0 chr12 81763023 81763222 -39494308 + ID_B1 SINE B4 2 223 -1 6 1208 248 266 51 0 chr12 81763227 81763306 -39494224 - PB1 SINE Alu -11 116 34 6 1208 489 229 93 0 chr12 81763934 81764052 -39493478 - RSINE1 SINE B4 0 165 37 6 1208 813 224 17 0 chr12 81764079 81764253 -39493277 - B4A SINE B4 -61 231 55 6 1208 244 254 40 40 chr12 81764284 81764358 -39493172 - L1MC LINE L1 -2563 3583 3510 6 1208 508 255 34 126 chr12 81764364 81764639 -39492891 - MTEa LTR MaLR 0 379 107 6 1208 1273 92 60 5 chr12 81764639 81764824 -39492706 - B2_Mm2 SINE B2 0 195 1 6 1208 452 311 45 89 chr12 81764824 81764937 -39492593 - MTEa LTR MaLR -253 106 2 6 1208 917 204 55 9 chr12 81764937 81765146 -39492384 - MTE-int LTR MaLR -52 1528 1310 6 1208 1091 163 41 0 chr12 81765170 81765366 -39492164 + URR1A DNA MER1_type 22 225 -1 6 1208 830 269 117 20 chr12 81765378 81765719 -39491811 - MTE-int LTR MaLR -306 1274 901 6 1208 24 0 0 0 chr12 81765720 81765744 -39491786 + AT_rich Low_complexity Low_complexity 1 24 0 6 1208 238 302 145 38 chr12 81765744 81765875 -39491655 + B4A SINE B4 84 228 -64 6 1208 669 236 0 57 chr12 81765878 81766035 -39491495 + RSINE1 SINE B4 4 151 -14 6 1208 1357 283 66 17 chr12 81766193 81766839 -39490691 + Lx7 LINE L1 6619 7303 -393 6 1208 185 100 0 48 chr12 81766905 81766947 -39490583 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 6 1208 329 284 51 8 chr12 81767962 81768079 -39489451 - Charlie4a DNA MER1_type 0 508 387 6 1208 515 211 73 0 chr12 81768525 81768634 -39488896 + ID_B1 SINE B4 101 217 -7 6 1208 305 284 222 21 chr12 81768652 81768696 -39488834 + L1MEb LINE L1 295 351 -5719 6 1208 2229 130 55 14 chr12 81768696 81769063 -39488467 - RLTR14 LTR ERV1 0 382 1 6 1208 305 284 222 21 chr12 81769063 81769212 -39488318 + L1MEb LINE L1 352 527 -5543 6 1208 222 220 0 0 chr12 81769352 81769411 -39488119 + A-rich Low_complexity Low_complexity 1 59 0 6 1208 343 281 91 59 chr12 81769593 81769812 -39487718 + L1MC4 LINE L1 7816 8041 -1 6 1208 398 265 9 29 chr12 81770153 81770258 -39487272 - ID_B1 SINE B4 -9 215 113 6 1208 686 200 15 0 chr12 81770315 81770445 -39487085 + B1_Mur1 SINE Alu 17 148 -1 6 1208 526 251 145 22 chr12 81770494 81770633 -39486897 + B4A SINE B4 63 215 -77 6 1208 209 33 0 32 chr12 81770633 81770664 -39486866 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 6 1208 526 251 145 22 chr12 81770664 81770703 -39486827 + B4A SINE B4 216 262 -30 6 1208 1185 62 0 0 chr12 81770746 81770892 -39486638 - B1_Mus1 SINE Alu 0 148 3 6 1208 907 189 11 11 chr12 81770911 81771093 -39486437 - RMER16 LTR ERVK 0 533 352 6 1208 819 37 0 0 chr12 81771110 81771217 -39486313 - B1_Mm SINE Alu -1 146 40 6 1208 270 212 138 92 chr12 81771114 81771244 -39486286 - B4 SINE B4 -71 221 86 6 1208 377 184 121 108 chr12 81771243 81771434 -39486096 - RMER16 LTR ERVK -169 364 3 6 1208 1008 45 114 0 chr12 81771541 81771673 -39485857 - B1_Mm SINE Alu 0 147 1 6 1208 225 343 15 0 chr12 81771710 81771777 -39485753 + ID2 SINE ID 16 83 0 6 1208 694 267 19 46 chr12 81771799 81772015 -39485515 - B3 SINE B2 -1 215 6 6 1208 224 231 0 19 chr12 81772177 81772230 -39485300 - B1_Mur4 SINE Alu -4 146 95 7 1208 218 261 29 0 chr12 81772196 81772265 -39485265 - B1_Mus1 SINE Alu -51 97 27 7 1208 432 0 0 0 chr12 81772426 81772474 -39485056 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1208 659 194 42 28 chr12 81772474 81772617 -39484913 - B3A SINE B2 -45 153 9 7 1208 263 181 135 27 chr12 81772659 81772733 -39484797 - Lx8 LINE L1 -4 7469 7388 7 1208 546 284 23 29 chr12 81772766 81772940 -39484590 - Lx8 LINE L1 -152 7321 7149 7 1208 298 305 33 17 chr12 81773382 81773395 -39484135 + ID_B1 SINE B4 70 191 -33 7 1208 349 245 65 9 chr12 81773395 81773502 -39484028 + B1F SINE Alu 1 113 -36 7 1208 237 250 26 53 chr12 81773508 81773520 -39484010 + ID4_ SINE ID 1 74 -9 7 1208 239 230 31 47 chr12 81773520 81773584 -39483946 + tRNA-Ala-GCY_ tRNA tRNA 6 68 -7 7 1208 366 274 44 9 chr12 81774011 81774125 -39483405 + PB1D9 SINE Alu 1 118 -2 7 1208 490 217 108 0 chr12 81774459 81774588 -39482942 + B1F2 SINE Alu 1 143 -6 7 1208 264 320 13 0 chr12 81774590 81774665 -39482865 + ID4_ SINE ID 5 80 -3 7 1208 235 241 12 60 chr12 81775354 81775438 -39482092 - RMER4A LTR ERVK -362 104 25 7 1208 31 26 0 0 chr12 81775555 81775593 -39481937 + AT_rich Low_complexity Low_complexity 1 38 0 7 1208 1288 62 5 63 chr12 81775685 81775875 -39481655 - B2_Mm1t SINE B2 -14 179 1 7 1208 2135 133 79 5 chr12 81775886 81776265 -39481265 + MTC LTR MaLR 13 419 -2 7 1208 884 146 27 14 chr12 81776538 81776684 -39480846 - B1_Mur4 SINE Alu -2 148 1 7 1208 1034 70 0 0 chr12 81777028 81777171 -39480359 + B1_Mus1 SINE Alu 6 148 0 7 1208 350 336 15 39 chr12 81777206 81777336 -39480194 - RSINE1 SINE B4 0 165 39 7 1208 707 152 17 79 chr12 81777384 81777562 -39479968 - B2_Mm2 SINE B2 -28 167 1 7 1208 283 219 0 59 chr12 81777653 81777721 -39479809 + RSINE1 SINE B4 102 165 0 7 1208 1255 41 0 0 chr12 81777751 81777898 -39479632 + B1_Mus2 SINE Alu 1 147 0 7 1208 537 302 52 6 chr12 81778314 81778487 -39479043 - RMER30 DNA MER1_type -14 188 8 7 1208 867 159 222 0 chr12 81778800 81778976 -39478554 - B3 SINE B2 0 216 2 7 1208 329 186 14 0 chr12 81779379 81779449 -39478081 - ID4 SINE ID -11 72 2 7 1208 447 162 27 0 chr12 81779863 81779937 -39477593 - B1_Mus2 SINE Alu -25 122 47 7 1208 269 214 169 0 chr12 81780111 81780200 -39477330 + L1MA7 LINE L1 6111 6214 -77 7 1208 1193 111 125 5 chr12 81781607 81781807 -39475723 - URR1A DNA MER1_type -2 224 1 7 1208 627 308 7 0 chr12 81784400 81784546 -39472984 + RSINE1 SINE B4 4 150 -15 7 1208 368 250 125 71 chr12 81784930 81785042 -39472488 - RSINE1 SINE B4 -35 130 13 7 1208 21 36 0 0 chr12 81785058 81785086 -39472444 + AT_rich Low_complexity Low_complexity 1 28 0 7 1208 312 267 82 12 chr12 81785116 81785213 -39472317 + PB1D7 SINE Alu 17 120 0 7 1208 617 192 67 0 chr12 81785214 81785334 -39472196 + ID_B1 SINE B4 91 218 -6 7 1208 390 252 185 0 chr12 81785504 81785623 -39471907 - B1F1 SINE Alu 0 149 9 7 1208 297 237 26 0 chr12 81785684 81785760 -39471770 - L1MA4 LINE L1 -388 5912 5835 7 1208 244 156 30 30 chr12 81785788 81785854 -39471676 + CT-rich Low_complexity Low_complexity 2 67 0 7 1208 924 93 14 48 chr12 81785865 81785878 -39471652 - B1_Mus1 SINE Alu -1 147 136 7 1208 198 0 0 0 chr12 81785878 81785900 -39471630 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 7 1208 924 93 14 48 chr12 81785900 81786033 -39471497 - B1_Mus1 SINE Alu -13 135 6 7 1208 946 268 118 50 chr12 81786042 81786663 -39470867 - L1MA4 LINE L1 -517 5780 5088 7 1208 1060 69 23 0 chr12 81786753 81786884 -39470646 - B1_Mus2 SINE Alu -13 134 1 7 1208 316 270 202 0 chr12 81786995 81787084 -39470446 - PB1D10 SINE Alu -10 107 1 7 1208 922 257 78 65 chr12 81787828 81788025 -39469505 + MTE2a LTR MaLR 5 198 -181 7 1208 180 77 0 0 chr12 81788025 81788051 -39469479 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 7 1208 922 257 78 65 chr12 81788051 81788223 -39469307 + MTE2a LTR MaLR 199 379 0 7 1209 233 130 0 42 chr12 81789239 81789287 -39468243 + CT-rich Low_complexity Low_complexity 3 48 0 7 1209 1139 35 0 21 chr12 81789287 81789330 -39468200 - B1_Mus1 SINE Alu 0 148 7 7 1209 276 255 13 57 chr12 81789330 81789432 -39468098 - ORR1B1-int LTR MaLR -755 754 653 7 1209 858 109 0 0 chr12 81789432 81789560 -39467970 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 7 1209 919 131 244 0 chr12 81789567 81789735 -39467795 - B3 SINE B2 -6 210 2 7 1209 276 255 13 57 chr12 81789735 81789782 -39467748 - ORR1B1-int LTR MaLR -857 652 604 7 1209 258 254 36 124 chr12 81789782 81789841 -39467689 - L1MA4 LINE L1 -2888 3255 3196 7 1209 1152 219 0 10 chr12 81789841 81790048 -39467482 + B3 SINE B2 1 205 -11 7 1209 258 254 36 124 chr12 81790048 81790213 -39467317 - L1MA4 LINE L1 -2948 3195 3051 7 1209 327 198 131 36 chr12 81790248 81790332 -39467198 + PB1D10 SINE Alu 19 110 -7 7 1209 327 230 60 26 chr12 81790399 81790515 -39467015 + L1M2 LINE L1 3331 3450 -2693 7 1209 447 277 10 0 chr12 81790724 81790825 -39466705 + PB1D10 SINE Alu 1 102 -15 7 1209 375 193 0 0 chr12 81791719 81791776 -39465754 + tRNA-Ala-GCY_ tRNA tRNA 2 58 -17 7 1209 1974 220 82 18 chr12 81791903 81792393 -39465137 + RLTR11A2 LTR ERVK 7 527 0 7 1209 306 361 0 0 chr12 81795000 81795119 -39462411 - MamRep564 Unknown Unknown -134 223 105 7 1209 414 0 0 0 chr12 81795288 81795334 -39462196 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1209 192 40 0 0 chr12 81795348 81795373 -39462157 + (GGGGA)n Simple_repeat Simple_repeat 5 29 0 7 1209 204 234 0 49 chr12 81796877 81796958 -39460572 + T-rich Low_complexity Low_complexity 2 78 0 7 1209 1951 92 95 0 chr12 81796971 81797254 -39460276 - ORR1A2 LTR MaLR -1 326 17 7 1209 10995 134 62 16 chr12 81797254 81799132 -39458398 - ORR1A2-int LTR MaLR 0 1963 1 7 1209 2036 92 112 0 chr12 81799132 81799426 -39458104 - ORR1A2 LTR MaLR 0 327 1 7 1209 183 162 0 0 chr12 81799547 81799584 -39457946 + C-rich Low_complexity Low_complexity 5 41 0 7 1209 993 211 80 0 chr12 81799648 81799847 -39457683 - B3 SINE B2 -1 215 1 7 1209 1176 101 78 0 chr12 81800482 81800661 -39456869 + B2_Mm2 SINE B2 1 193 -2 7 1209 257 187 90 39 chr12 81800969 81801047 -39456483 + MIR SINE MIR 54 135 -73 7 1209 345 24 0 0 chr12 81801121 81801163 -39456367 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 7 1209 1178 51 0 0 chr12 81801163 81801300 -39456230 - B1_Mm SINE Alu -9 138 2 7 1209 208 270 30 110 chr12 81801488 81801588 -39455942 + MIRc SINE MIR 4 95 -173 7 1209 883 134 79 0 chr12 81801702 81801829 -39455701 + B1_Mur3 SINE Alu 1 137 -12 7 1209 233 29 0 29 chr12 81801829 81801864 -39455666 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 7 1209 939 140 0 0 chr12 81801871 81802028 -39455502 + (GAAA)n Simple_repeat Simple_repeat 4 160 0 7 1209 1109 207 49 0 chr12 81802102 81802305 -39455225 + ID_B1 SINE B4 3 215 -9 7 1209 308 296 47 76 chr12 81802663 81802794 -39454736 - MIRb SINE MIR -88 180 46 7 1209 257 275 38 0 chr12 81802906 81802986 -39454544 + MIRb SINE MIR 105 187 -81 7 1209 412 0 73 0 chr12 81803569 81803637 -39453893 + (TCC)n Simple_repeat Simple_repeat 2 74 0 7 1209 222 315 140 10 chr12 81803727 81803868 -39453662 + MIR SINE MIR 110 268 0 7 1209 2529 66 3 0 chr12 81804202 81804520 -39453010 - ORR1A2 LTR MaLR -8 319 1 7 1209 380 308 179 8 chr12 81804521 81804655 -39452875 - ID_B1 SINE B4 -67 157 1 7 1209 309 314 60 73 chr12 81805261 81805412 -39452118 + B1F1 SINE Alu 1 149 0 7 1209 313 389 22 0 chr12 81805634 81805773 -39451757 - MER63A DNA AcHobo -60 150 9 7 1209 372 43 0 0 chr12 81805803 81805849 -39451681 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1209 230 302 95 0 chr12 81805975 81806038 -39451492 - MamGypLTR1a LTR Gypsy -633 151 83 7 1209 434 159 11 0 chr12 81807219 81807307 -39450223 + C-rich Low_complexity Low_complexity 1 89 0 7 1209 285 324 110 27 chr12 81808414 81808560 -39448970 + MIRm SINE MIR 15 172 -36 7 1209 186 43 0 0 chr12 81809735 81809758 -39447772 + (CAGGG)n Simple_repeat Simple_repeat 2 24 0 7 1209 397 358 10 31 chr12 81809768 81809964 -39447566 + MIR SINE MIR 21 212 -50 7 1209 321 135 0 0 chr12 81810512 81810564 -39446966 + URR1A DNA MER1_type 66 117 -109 7 1209 1341 271 43 31 chr12 81811581 81812068 -39445462 - L1MC2 LINE L1 -216 6303 5811 7 1209 243 0 0 0 chr12 81812071 81812098 -39445432 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 7 1209 1393 61 16 27 chr12 81812141 81812327 -39445203 - B2_Mm2 SINE B2 -7 188 5 7 1209 1436 49 5 62 chr12 81812340 81812535 -39444995 - B2_Mm2 SINE B2 -9 186 3 7 1209 506 305 24 5 chr12 81812537 81812748 -39444782 - L1MC2 LINE L1 -3269 3052 2838 7 1209 556 274 32 78 chr12 81812768 81812986 -39444544 - MLT1A LTR MaLR -2 372 165 7 1209 216 320 136 29 chr12 81813080 81813183 -39444347 - PB1D10 SINE Alu -2 115 2 7 1209 396 71 0 0 chr12 81813221 81813277 -39444253 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1209 303 239 91 107 chr12 81813277 81813380 -39444150 - L1MC2 LINE L1 -5509 999 911 7 1209 209 57 29 0 chr12 81813380 81813415 -39444115 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1209 303 239 91 107 chr12 81813415 81813498 -39444032 - L1MC2 LINE L1 -5598 910 816 7 1209 834 168 14 21 chr12 81813500 81813640 -39443890 - B1_Mur1 SINE Alu -9 140 2 7 1209 214 276 86 0 chr12 81814280 81814338 -39443192 + B1F2 SINE Alu 23 85 -64 7 1209 301 254 99 0 chr12 81814653 81814724 -39442806 - ID2 SINE ID -4 79 2 7 1209 231 308 173 0 chr12 81814983 81815087 -39442443 + L2b LINE L2 3254 3375 0 7 1209 321 251 132 60 chr12 81815238 81815420 -39442110 + L3 LINE CR1 4076 4270 -219 7 1209 1160 38 0 0 chr12 81816177 81816309 -39441221 - B1_Mus2 SINE Alu -13 134 3 7 1209 382 271 86 43 chr12 81816859 81816998 -39440532 - MLT1I LTR MaLR -13 398 254 7 1209 187 271 169 14 chr12 81819311 81819382 -39438148 + MER5B DNA MER1_type 80 161 -17 7 1209 229 211 0 17 chr12 81819435 81819493 -39438037 + (CACCAT)n Simple_repeat Simple_repeat 6 62 0 7 1209 189 0 0 0 chr12 81819589 81819610 -39437920 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1209 356 59 20 0 chr12 81820915 81820966 -39436564 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 8 1209 1403 75 38 0 chr12 81820966 81821152 -39436378 - B2_Mm2 SINE B2 -1 194 2 8 1209 902 197 0 7 chr12 81823624 81823772 -39433758 - B3 SINE B2 -68 148 2 8 1209 1005 209 10 34 chr12 81824666 81824874 -39432656 + B3 SINE B2 1 203 -13 8 1209 300 192 260 0 chr12 81825378 81825451 -39432079 - B1_Mm SINE Alu -47 100 9 8 1209 534 170 120 0 chr12 81825508 81825608 -39431922 - PB1D9 SINE Alu 0 120 9 8 1209 235 288 109 88 chr12 81825544 81825681 -39431849 - B4 SINE B4 -123 169 30 8 1209 389 275 133 0 chr12 81826482 81826602 -39430928 - MTE2b LTR MaLR -9 370 235 8 1209 340 199 92 6 chr12 81826619 81826776 -39430754 - RLTR40 LTR ERVK -72 745 492 8 1209 444 135 0 0 chr12 81826779 81826853 -39430677 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 8 1209 1298 73 17 6 chr12 81826856 81826870 -39430660 - B2_Mm2 SINE B2 0 195 182 8 1209 1045 78 64 0 chr12 81826870 81827011 -39430519 - B1_Mur4 SINE Alu 0 150 1 8 1209 1298 73 17 6 chr12 81827011 81827176 -39430354 - B2_Mm2 SINE B2 -14 181 15 8 1209 913 256 95 85 chr12 81827188 81827368 -39430162 - RLTR40 LTR ERVK -333 484 298 8 1209 639 87 0 0 chr12 81827368 81827472 -39430058 + (TC)n Simple_repeat Simple_repeat 1 104 0 8 1209 913 256 95 85 chr12 81827472 81827752 -39429778 - RLTR40 LTR ERVK -520 297 19 8 1209 1067 68 0 76 chr12 81827755 81827905 -39429625 + B1_Mus1 SINE Alu 2 139 -9 8 1209 238 26 0 49 chr12 81827905 81827946 -39429584 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1209 572 280 13 6 chr12 81828549 81828707 -39428823 - MTE2b LTR MaLR -213 166 8 8 1209 207 0 0 0 chr12 81829520 81829543 -39427987 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1209 1231 55 0 0 chr12 81829543 81829689 -39427841 - B1_Mus2 SINE Alu 0 147 2 8 1209 1028 129 0 0 chr12 81830087 81830227 -39427303 + B1_Mur3 SINE Alu 1 140 -9 8 1209 1042 81 0 29 chr12 81830455 81830594 -39426936 + B1_Mus1 SINE Alu 1 135 -13 8 1209 366 74 0 0 chr12 81830633 81830687 -39426843 + (TCTTG)n Simple_repeat Simple_repeat 2 55 0 8 1209 655 203 0 25 chr12 81830687 81830808 -39426722 - B1_Mus2 SINE Alu -1 146 29 8 1209 231 244 39 118 chr12 81830731 81830833 -39426697 - RLTR25B LTR ERVK -526 502 409 8 1209 456 257 108 16 chr12 81830834 81831020 -39426510 - L1MB2 LINE L1 -75 6096 5894 8 1209 456 289 63 44 chr12 81831027 81831186 -39426344 - RSINE1 SINE B4 0 165 4 8 1209 994 233 5 5 chr12 81831214 81831408 -39426122 - B3 SINE B2 0 216 23 8 1209 239 143 247 49 chr12 81831422 81831503 -39426027 - L1M3 LINE L1 -281 5890 5794 8 1209 243 296 193 0 chr12 81831947 81832035 -39425495 - MIRc SINE MIR -142 126 22 8 1209 437 188 26 122 chr12 81832151 81832266 -39425264 + MT2B LTR ERVL 154 257 -344 8 1209 1010 57 0 0 chr12 81832175 81832298 -39425232 + B1_Mus1 SINE Alu 13 135 -13 8 1209 369 0 0 0 chr12 81832299 81832340 -39425190 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 1209 778 268 32 23 chr12 81832853 81833071 -39424459 + ID_B1 SINE B4 2 221 -3 8 1209 708 281 20 25 chr12 81833331 81833358 -39424172 - B3A SINE B2 -2 196 171 8 1209 1281 50 0 0 chr12 81833358 81833617 -39423913 + (TG)n Simple_repeat Simple_repeat 1 259 0 8 1209 708 281 20 25 chr12 81833617 81833784 -39423746 - B3A SINE B2 -28 170 1 8 1209 1399 87 5 0 chr12 81833791 81833976 -39423554 - B2_Mm1a SINE B2 -6 187 2 8 1209 796 223 7 0 chr12 81834010 81834158 -39423372 + B1F1 SINE Alu 1 149 0 8 1209 381 193 32 54 chr12 81834203 81834306 -39423224 - B1_Mur4 SINE Alu 0 150 19 8 1209 332 367 77 44 chr12 81834318 81834566 -39422964 + MLT1L LTR MaLR 13 268 -342 8 1209 472 218 55 4 chr12 81834895 81835003 -39422527 - B3A SINE B2 -100 116 1 8 1209 782 139 0 0 chr12 81835144 81835266 -39422264 + B1_Mus1 SINE Alu 22 143 -5 8 1209 296 306 66 0 chr12 81835304 81835425 -39422105 + Kanga1d DNA Tc2 473 601 -8 8 1209 391 219 82 20 chr12 81835637 81835735 -39421795 - MLT1J1 LTR MaLR -283 161 58 8 1209 473 199 13 16 chr12 81836593 81836698 -39420832 - PB1D9 SINE Alu 0 127 21 8 1209 320 169 28 0 chr12 81836763 81836834 -39420696 + (CATA)n Simple_repeat Simple_repeat 2 74 0 8 1209 387 0 0 0 chr12 81837741 81837784 -39419746 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1209 1209 192 229 10 chr12 81838868 81839173 -39418357 - ORR1D1 LTR MaLR 0 374 3 8 1209 345 185 155 11 chr12 81839175 81839287 -39418243 + PB1D10 SINE Alu 5 130 -18 8 1209 271 294 42 92 chr12 81839310 81839339 -39418191 - L2a LINE L2 -69 3357 3330 8 1209 1579 134 30 216 chr12 81839339 81839843 -39417687 - RMER17C LTR ERVK 0 410 1 8 1209 271 294 42 92 chr12 81839843 81840030 -39417500 - L2a LINE L2 -97 3329 3152 8 1209 385 348 75 31 chr12 81840053 81840384 -39417146 - MLT1B LTR MaLR -11 379 21 8 1209 229 26 53 0 chr12 81840868 81840906 -39416624 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 8 1209 1100 82 0 0 chr12 81840906 81841041 -39416489 - B1_Mus1 SINE Alu -13 135 1 8 1209 301 305 12 0 chr12 81841781 81841863 -39415667 + MLT1J LTR MaLR 110 192 -320 8 1209 190 345 22 22 chr12 81842194 81842286 -39415244 + L2c LINE L2 3278 3369 -18 8 1209 844 254 81 0 chr12 81842452 81842649 -39414881 + ID_B1 SINE B4 3 215 -9 8 1209 781 37 23 58 chr12 81843315 81843488 -39414042 + (TTCTC)n Simple_repeat Simple_repeat 3 169 0 8 1209 208 255 20 0 chr12 81843490 81843541 -39413989 + CT-rich Low_complexity Low_complexity 5 56 0 8 1209 337 301 26 17 chr12 81843608 81843723 -39413807 - MLT1A1 LTR MaLR 0 408 293 8 1209 240 310 41 83 chr12 81843779 81843948 -39413582 - MLT1A1 LTR MaLR -228 180 19 8 1209 397 279 123 53 chr12 81843952 81844179 -39413351 + ORR1E LTR MaLR 4 246 -113 8 1209 233 271 0 0 chr12 81844183 81844231 -39413299 + polypyrimidine Low_complexity Low_complexity 1 48 0 8 1209 746 126 36 0 chr12 81844239 81844350 -39413180 - B1_Mur2 SINE Alu -26 123 9 8 1209 478 240 83 30 chr12 81844350 81844364 -39413166 - ID_B1 SINE B4 -15 166 70 8 1209 226 250 67 67 chr12 81844404 81844494 -39413036 + ORR1E LTR MaLR 285 374 0 8 1209 2147 166 43 5 chr12 81844975 81845345 -39412185 + ORR1C2 LTR MaLR 1 384 0 8 1209 420 153 0 0 chr12 81845932 81846017 -39411513 + (CA)n Simple_repeat Simple_repeat 1 85 0 8 1209 1231 7 0 13 chr12 81846080 81846230 -39411300 + (TTC)n Simple_repeat Simple_repeat 2 149 0 8 1209 1432 87 16 0 chr12 81846259 81846444 -39411086 - B2_Mm2 SINE B2 -7 188 1 8 1209 654 144 30 0 chr12 81846471 81846603 -39410927 + CT-rich Low_complexity Low_complexity 1 136 0 8 1209 483 121 30 0 chr12 81846603 81846708 -39410822 - B1_Mus2 SINE Alu -1 148 40 8 1209 934 223 39 19 chr12 81846724 81846930 -39410600 - B3 SINE B2 -5 211 2 8 1209 1145 255 29 18 chr12 81848096 81848372 -39409158 - B4 SINE B4 -6 286 8 8 1209 274 190 0 65 chr12 81848389 81848451 -39409079 - B1F SINE Alu 0 149 92 8 1209 354 23 0 0 chr12 81848472 81848515 -39409015 + (TC)n Simple_repeat Simple_repeat 1 43 0 8 1209 832 221 33 57 chr12 81848515 81848726 -39408804 - B3 SINE B2 -9 207 2 8 1209 252 246 18 0 chr12 81848731 81848788 -39408742 + CT-rich Low_complexity Low_complexity 3 60 0 8 1209 180 111 0 0 chr12 81849428 81849455 -39408075 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 8 1209 574 266 81 40 chr12 81849575 81849798 -39407732 + ORR1E LTR MaLR 6 237 -122 8 1209 322 264 99 76 chr12 81850031 81850162 -39407368 - MER5A1 DNA MER1_type -12 154 21 8 1209 1354 140 13 9 chr12 81850331 81850555 -39406975 - URR1B DNA MER1_type 0 225 1 8 1209 331 290 120 8 chr12 81850573 81850698 -39406832 + MER3 DNA MER1_type 38 176 -33 8 1209 292 231 510 0 chr12 81850738 81850863 -39406667 - MER5A DNA MER1_type 0 189 1 8 1209 1058 217 0 45 chr12 81851216 81851438 -39406092 + B3 SINE B2 1 212 -4 8 1209 258 106 0 0 chr12 81851854 81851901 -39405629 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 8 1209 281 319 35 9 chr12 81853373 81853487 -39404043 + PB1D10 SINE Alu 1 117 0 8 1209 724 145 17 0 chr12 81853618 81853735 -39403795 - PB1D9 SINE Alu -1 119 1 8 1209 760 149 90 0 chr12 81854239 81854373 -39403157 + B1_Mus1 SINE Alu 2 147 -1 8 1209 196 260 0 20 chr12 81854388 81854439 -39403091 + MIRm SINE MIR 226 275 -1 8 1209 442 248 91 23 chr12 81854973 81855105 -39402425 + MLT1A1 LTR MaLR 268 408 0 8 1209 207 0 0 0 chr12 81855675 81855698 -39401832 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1209 273 343 10 0 chr12 81855699 81855801 -39401729 - PB1D10 SINE Alu -14 103 1 8 1209 21 0 0 0 chr12 81856442 81856463 -39401067 + AT_rich Low_complexity Low_complexity 1 21 0 8 1209 22 56 0 0 chr12 81859019 81859055 -39398475 + GC_rich Low_complexity Low_complexity 1 36 0 8 1209 249 311 24 24 chr12 81859194 81859362 -39398168 + C-rich Low_complexity Low_complexity 5 172 0 8 1209 255 31 0 0 chr12 81859900 81859932 -39397598 + (CTG)n Simple_repeat Simple_repeat 3 34 0 8 1209 210 191 0 0 chr12 81859941 81859983 -39397547 + (CTGGGG)n Simple_repeat Simple_repeat 4 45 0 8 1209 853 124 80 0 chr12 81862365 81862502 -39395028 + B1_Mur4 SINE Alu 2 149 -1 8 1209 360 0 0 0 chr12 81862531 81862571 -39394959 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 8 1209 333 0 0 0 chr12 81862848 81862885 -39394645 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 8 1209 1776 210 40 47 chr12 81863053 81863364 -39394166 + MTC LTR MaLR 1 306 -115 8 1209 1270 84 5 103 chr12 81863364 81863390 -39394140 - B2_Mm2 SINE B2 -3 192 170 8 1209 1258 48 0 0 chr12 81863390 81863537 -39393993 + B1_Mm SINE Alu 1 147 0 8 1209 1270 84 5 103 chr12 81863537 81863723 -39393807 - B2_Mm2 SINE B2 -26 169 1 8 1209 1776 210 40 47 chr12 81863723 81863835 -39393695 + MTC LTR MaLR 307 421 0 8 1209 245 267 165 19 chr12 81864183 81864286 -39393244 - LTR40a LTR ERVL 0 462 345 9 1209 416 95 0 0 chr12 81864462 81864525 -39393005 - B2_Mm2 SINE B2 -132 63 1 9 1209 1417 228 73 73 chr12 81864549 81864718 -39392812 + MTEa LTR MaLR 9 170 -209 9 1209 796 300 4 35 chr12 81864718 81864946 -39392584 + ID_B1 SINE B4 3 223 -1 9 1209 1417 228 73 73 chr12 81864946 81865145 -39392385 + MTEa LTR MaLR 171 377 -2 9 1209 463 318 32 0 chr12 81865156 81865310 -39392220 - LTR40a LTR ERVL -294 225 67 9 1209 284 308 0 49 chr12 81865346 81865428 -39392102 - MIRb SINE MIR -171 97 20 9 1209 255 61 0 0 chr12 81865638 81865671 -39391859 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1209 270 0 0 0 chr12 81865671 81865700 -39391830 + (TATG)n Simple_repeat Simple_repeat 2 31 0 9 1209 270 0 0 0 chr12 81865730 81865760 -39391770 + (TATG)n Simple_repeat Simple_repeat 2 31 0 9 1209 374 210 98 12 chr12 81865762 81865844 -39391686 - ID_B1 SINE B4 -31 193 105 9 1209 247 207 50 33 chr12 81865794 81865854 -39391676 - PB1D7 SINE Alu -44 76 16 9 1209 1334 68 6 0 chr12 81866026 81866202 -39391328 + B2_Mm1t SINE B2 10 186 -7 9 1209 568 229 76 96 chr12 81866202 81866400 -39391130 - B3A SINE B2 0 198 5 9 1209 441 0 0 0 chr12 81866549 81866598 -39390932 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 9 1209 249 146 24 0 chr12 81866660 81866701 -39390829 + B1F SINE Alu 20 61 -88 9 1209 239 190 0 147 chr12 81866662 81866730 -39390800 + ID_B1 SINE B4 104 161 -63 9 1209 189 0 0 0 chr12 81866834 81866855 -39390675 + (TTG)n Simple_repeat Simple_repeat 2 22 0 9 1209 1178 114 17 22 chr12 81866855 81867035 -39390495 - B2_Mm2 SINE B2 -15 180 2 9 1209 524 317 39 6 chr12 81867103 81867284 -39390246 + MER58A DNA MER1_type 38 224 0 9 1209 401 265 148 72 chr12 81867305 81867569 -39389961 + LTR41B LTR ERVL 1 284 -474 9 1209 614 286 61 13 chr12 81867626 81867856 -39389674 + LTR41B LTR ERVL 511 751 -7 9 1209 226 297 128 51 chr12 81868543 81868567 -39388963 - ORR1D2 LTR MaLR -88 282 247 9 1209 485 342 59 48 chr12 81868567 81868789 -39388741 + B4 SINE B4 2 227 -65 9 1209 1136 66 126 6 chr12 81868789 81868956 -39388574 + B2_Mm2 SINE B2 1 187 -8 9 1209 485 342 59 48 chr12 81868956 81869003 -39388527 + B4 SINE B4 228 274 -18 9 1209 554 233 111 20 chr12 81869167 81869320 -39388210 - B4 SINE B4 -123 169 3 9 1209 265 311 86 36 chr12 81869320 81869457 -39388073 - MLT1B LTR MaLR -220 170 27 9 1209 417 274 0 10 chr12 81869726 81869829 -39387701 + BC1_Mm scRNA scRNA 1 102 -50 9 1209 196 405 18 0 chr12 81870046 81870157 -39387373 + MIR SINE MIR 52 164 -98 9 1209 657 226 131 26 chr12 81870192 81870383 -39387147 - B3 SINE B2 -2 214 4 9 1209 672 48 0 0 chr12 81871070 81871154 -39386376 + (TTTTC)n Simple_repeat Simple_repeat 3 86 0 9 1209 1132 106 0 11 chr12 81871158 81871339 -39386191 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 9 1209 354 342 33 8 chr12 81871339 81871460 -39386070 - B1F SINE Alu -9 140 17 9 1209 231 36 0 0 chr12 81871479 81871507 -39386023 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1209 378 0 0 0 chr12 81871641 81871683 -39385847 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 9 1209 433 88 0 5 chr12 81871697 81871762 -39385768 - B2_Mm2 SINE B2 -107 109 47 9 1209 1227 93 41 0 chr12 81871790 81871962 -39385568 - B2_Mm1t SINE B2 -14 179 1 9 1209 247 136 60 15 chr12 81872190 81872257 -39385273 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 1209 182 131 38 57 chr12 81872284 81872389 -39385141 + (TATG)n Simple_repeat Simple_repeat 2 104 0 9 1209 198 164 0 0 chr12 81872430 81872485 -39385045 + T-rich Low_complexity Low_complexity 1 55 0 9 1209 719 70 217 0 chr12 81872487 81872602 -39384928 - B1_Mm SINE Alu 0 147 8 9 1209 516 173 165 45 chr12 81872602 81872619 -39384911 - ID_B1 SINE B4 -1 222 75 9 1209 338 300 50 0 chr12 81872636 81872736 -39384794 - PB1D10 SINE Alu -8 109 5 9 1209 191 400 73 15 chr12 81872789 81872926 -39384604 + MIRb SINE MIR 101 245 -23 9 1209 1392 146 137 12 chr12 81873239 81873495 -39384035 - ORR1C1 LTR MaLR 0 378 91 9 1209 1583 178 149 30 chr12 81873497 81873974 -39383556 - RLTR11A LTR ERVK -2 526 1 9 1209 516 142 32 89 chr12 81873974 81874095 -39383435 - ORR1C1 LTR MaLR -264 114 1 9 1209 219 250 73 0 chr12 81874347 81874415 -39383115 - PB1D10 SINE Alu -7 110 38 9 1209 2055 131 9 61 chr12 81874421 81874763 -39382767 - ORR1A3 LTR MaLR 0 326 3 9 1209 660 183 250 24 chr12 81874806 81874974 -39382556 - B3 SINE B2 -6 210 5 9 1209 340 296 0 0 chr12 81874990 81875061 -39382469 - ID4 SINE ID -11 72 2 9 1209 408 40 0 0 chr12 81875403 81875453 -39382077 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1209 395 256 13 0 chr12 81875627 81875705 -39381825 - ID4 SINE ID 0 83 5 9 1209 436 255 0 0 chr12 81876908 81877002 -39380528 - PB1D10 SINE Alu 0 117 24 9 1209 683 289 5 58 chr12 81877022 81877228 -39380302 - B3A SINE B2 -1 197 3 9 1209 779 197 0 39 chr12 81877239 81877392 -39380138 - B1_Mur1 SINE Alu -1 148 2 9 1209 602 254 7 34 chr12 81877569 81877716 -39379814 - B1F SINE Alu -2 147 5 9 1209 1105 245 67 3 chr12 81877855 81878138 -39379392 + MER45R DNA Tip100 659 959 -622 9 1209 265 308 5 240 chr12 81878165 81878301 -39379229 + MER45R DNA Tip100 1435 1536 -45 9 1209 1124 62 28 0 chr12 81878301 81878445 -39379085 - B1_Mus1 SINE Alu 0 148 1 9 1209 265 308 5 240 chr12 81878445 81878500 -39379030 + MER45R DNA Tip100 1537 1581 0 9 1209 307 282 257 8 chr12 81878537 81878570 -39378960 + B4 SINE B4 59 178 -114 9 1209 587 157 78 0 chr12 81878570 81878672 -39378858 + PB1D9 SINE Alu 11 120 0 9 1209 307 282 257 8 chr12 81878672 81878688 -39378842 + B4 SINE B4 179 244 -48 9 1209 268 260 0 0 chr12 81878752 81878802 -39378728 + B1F SINE Alu 71 120 -29 9 1209 420 198 49 0 chr12 81878997 81879078 -39378452 + MER5A1 DNA MER1_type 78 162 -4 9 1209 200 321 48 48 chr12 81879982 81880129 -39377401 - MIR SINE MIR 0 262 116 9 1209 1570 53 0 0 chr12 81880239 81880426 -39377104 - B2_Mm1a SINE B2 -5 188 2 9 1209 3807 125 27 14 chr12 81880438 81881077 -39376453 - RMER6A LTR ERVK 0 756 110 9 1209 288 0 0 0 chr12 81881081 81881113 -39376417 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 1209 392 85 0 48 chr12 81881486 81881548 -39375982 - RMER6A LTR ERVK -392 69 11 9 1209 372 264 57 11 chr12 81881543 81881631 -39375899 - PB1D10 SINE Alu -13 104 13 9 1209 438 223 64 0 chr12 81882409 81882503 -39375027 - PB1 SINE Alu -9 118 19 9 1209 180 0 0 0 chr12 81882538 81882558 -39374972 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1209 867 148 7 34 chr12 81882558 81882705 -39374825 - B1_Mus2 SINE Alu 0 147 5 9 1209 261 348 0 0 chr12 81882709 81882798 -39374732 - L1ME3A LINE L1 -42 6131 6043 9 1209 244 329 38 0 chr12 81882798 81882877 -39374653 + ID4 SINE ID 2 83 0 9 1209 366 123 0 0 chr12 81882877 81882934 -39374596 + (A)n Simple_repeat Simple_repeat 1 57 0 9 1209 359 258 103 0 chr12 81882934 81883031 -39374499 + PB1D10 SINE Alu 1 107 -10 9 1209 238 297 0 13 chr12 81883064 81883139 -39374391 - L1ME3A LINE L1 -181 5992 5919 9 1209 365 314 84 56 chr12 81883525 81883794 -39373736 - L1ME3A LINE L1 -222 5951 5652 9 1209 551 265 134 23 chr12 81884435 81884651 -39372879 - MER63D DNA AcHobo -666 395 156 9 1209 23 0 0 0 chr12 81884723 81884746 -39372784 + AT_rich Low_complexity Low_complexity 1 23 0 9 1209 895 160 6 6 chr12 81885287 81885463 -39372067 + CT-rich Low_complexity Low_complexity 3 178 0 9 1209 351 0 0 0 chr12 81885463 81885502 -39372028 + (TA)n Simple_repeat Simple_repeat 2 40 0 9 1209 1029 99 13 50 chr12 81885502 81885661 -39371869 - B2_Mm2 SINE B2 -42 153 1 9 1209 822 189 0 7 chr12 81885875 81886014 -39371516 - B1_Mur3 SINE Alu -10 139 2 9 1209 234 0 0 0 chr12 81886562 81886588 -39370942 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1209 267 327 109 11 chr12 81886588 81886805 -39370725 + MIR SINE MIR 25 268 0 9 1209 275 153 32 63 chr12 81887184 81887247 -39370283 + tRNA-Ala-GCY_ tRNA tRNA 3 63 -12 9 1209 253 240 6 118 chr12 81887248 81887418 -39370112 + L1MB8 LINE L1 6026 6176 -2 9 1209 306 0 0 0 chr12 81887464 81887498 -39370032 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1209 522 289 18 0 chr12 81887503 81887617 -39369913 - RSINE1 SINE B4 -22 143 28 9 1209 339 244 68 23 chr12 81887657 81887745 -39369785 + PB1D10 SINE Alu 26 117 0 9 1209 313 309 86 77 chr12 81887755 81887817 -39369713 + ID_B1 SINE B4 1 223 -1 9 1209 533 155 12 101 chr12 81887817 81887976 -39369554 + B1_Mur3 SINE Alu 1 150 0 9 1209 411 73 0 0 chr12 81888126 81888181 -39369349 + (TA)n Simple_repeat Simple_repeat 2 56 0 9 1209 461 210 8 43 chr12 81889177 81889298 -39368232 - PB1D10 SINE Alu 0 117 1 9 1209 1105 164 17 52 chr12 81889460 81889692 -39367838 + URR1B DNA MER1_type 2 225 0 9 1209 756 176 6 17 chr12 81889798 81889874 -39367656 + polypurine Low_complexity Low_complexity 3 77 0 9 1209 1155 83 0 27 chr12 81889874 81890059 -39367471 + (GAA)n Simple_repeat Simple_repeat 1 180 0 9 1209 756 176 6 17 chr12 81890059 81890161 -39367369 + polypurine Low_complexity Low_complexity 78 178 0 9 1209 1080 100 0 27 chr12 81890171 81890356 -39367174 + (GAA)n Simple_repeat Simple_repeat 1 180 0 9 1209 1078 74 0 0 chr12 81890427 81890562 -39366968 + B1_Mus2 SINE Alu 2 136 -11 9 1209 333 0 0 0 chr12 81890562 81890599 -39366931 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 9 1209 191 156 0 43 chr12 81890599 81890634 -39366896 + A-rich Low_complexity Low_complexity 12 45 0 9 1209 22 0 0 0 chr12 81892643 81892665 -39364865 + AT_rich Low_complexity Low_complexity 1 22 0 9 1209 402 21 0 0 chr12 81892665 81892712 -39364818 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1209 348 289 141 0 chr12 81892968 81893110 -39364420 - RSINE1 SINE B4 -1 164 3 9 1209 1247 54 0 0 chr12 81893518 81893665 -39363865 - B1_Mm SINE Alu 0 147 1 1 1209 396 0 0 0 chr12 81894110 81894154 -39363376 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1209 325 213 61 41 chr12 81894287 81894385 -39363145 + PB1D10 SINE Alu 10 109 -8 1 1209 444 270 50 81 chr12 81894585 81894746 -39362784 + B3 SINE B2 1 156 -60 1 1209 586 165 158 0 chr12 81894785 81894912 -39362618 + B1_Mur2 SINE Alu 3 149 0 1 1209 1093 41 20 27 chr12 81895507 81895656 -39361874 + B1_Mus1 SINE Alu 1 148 0 1 1209 285 243 0 28 chr12 81895872 81895944 -39361586 + PB1D10 SINE Alu 48 117 0 1 1209 1164 34 7 27 chr12 81897138 81897288 -39360242 - B1_Mus1 SINE Alu 0 148 2 1 1209 965 88 7 0 chr12 81897614 81897750 -39359780 + B2_Mm1t SINE B2 1 137 -56 1 1209 274 158 16 35 chr12 81897772 81897845 -39359685 + B2_Mm2 SINE B2 47 121 -95 1 1209 288 0 0 0 chr12 81897855 81897887 -39359643 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 1209 255 57 0 0 chr12 81898057 81898079 -39359451 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1209 387 0 0 0 chr12 81898079 81898122 -39359408 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1209 255 57 0 0 chr12 81898122 81898134 -39359396 + (TA)n Simple_repeat Simple_repeat 2 13 0 1 1209 425 173 99 57 chr12 81898248 81898362 -39359168 - L1MB8 LINE L1 -290 5888 5768 1 1209 944 163 0 0 chr12 81898362 81898503 -39359027 - B1_Mur2 SINE Alu -6 143 3 1 1209 425 173 99 57 chr12 81898503 81898529 -39359001 - L1MB8 LINE L1 -411 5767 5742 1 1209 361 253 548 34 chr12 81898534 81898709 -39358821 - L1MB8 LINE L1 -65 6119 5872 1 1209 883 236 63 10 chr12 81898709 81898914 -39358616 - B3 SINE B2 0 216 1 1 1209 361 243 158 55 chr12 81898914 81899059 -39358471 - L1MB8 LINE L1 -307 5871 5694 1 1209 389 260 99 2 chr12 81899063 81899184 -39358346 - PB1D10 SINE Alu -20 128 1 1 1209 239 310 0 90 chr12 81899129 81899207 -39358323 - B4 SINE B4 -152 140 70 1 1209 408 213 75 0 chr12 81899979 81900073 -39357457 - B1_Mur2 SINE Alu 0 149 49 1 1209 980 159 32 16 chr12 81900074 81900259 -39357271 - B2_Mm2 SINE B2 -7 188 1 1 1209 876 108 0 0 chr12 81900285 81900415 -39357115 + (TTCC)n Simple_repeat Simple_repeat 2 131 0 1 1209 867 156 0 33 chr12 81900423 81900575 -39356955 - B1_Mur3 SINE Alu -1 148 2 1 1209 229 179 16 82 chr12 81900578 81900639 -39356891 - B1_Mus2 SINE Alu -89 58 2 1 1209 309 254 56 0 chr12 81900994 81901065 -39356465 - ID SINE ID -146 78 4 1 1209 767 238 9 71 chr12 81901172 81901398 -39356132 - B3A SINE B2 -3 213 2 1 1209 640 89 20 0 chr12 81901477 81901578 -39355952 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 1 1209 839 176 0 75 chr12 81902369 81902529 -39355001 - B1_Mur2 SINE Alu -1 148 1 1 1209 207 96 26 64 chr12 81902532 81902567 -39354963 + T-rich Low_complexity Low_complexity 41 75 0 1 1209 536 106 423 0 chr12 81902567 81902671 -39354859 - B1_Mus1 SINE Alu 0 148 1 1 1209 207 96 26 64 chr12 81902671 81902713 -39354817 + T-rich Low_complexity Low_complexity 1 40 0 1 1209 238 53 0 95 chr12 81902713 81902755 -39354775 - B1F SINE Alu 0 149 112 1 1209 932 170 6 0 chr12 81902785 81902944 -39354586 + B3 SINE B2 1 160 -56 1 1209 932 238 115 35 chr12 81903558 81903872 -39353658 + MER2 DNA MER2_type 7 345 0 1 1209 964 200 9 51 chr12 81903945 81904161 -39353369 - B3 SINE B2 -8 208 2 1 1209 198 0 0 0 chr12 81904605 81904627 -39352903 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 1 1209 203 324 68 38 chr12 81905186 81905291 -39352239 + MIRc SINE MIR 15 121 -87 1 1209 405 248 223 0 chr12 81905297 81905418 -39352112 - B1F SINE Alu -1 148 1 1 1209 633 232 43 14 chr12 81905571 81905711 -39351819 - B1_Mur3 SINE Alu -5 144 1 1 1209 1208 35 7 0 chr12 81905734 81905877 -39351653 - B1_Mus1 SINE Alu 0 148 5 1 1209 327 276 49 43 chr12 81906119 81906282 -39351248 + MIR SINE MIR 92 255 -7 1 1209 227 292 0 40 chr12 81906382 81906457 -39351073 + CT-rich Low_complexity Low_complexity 5 76 0 1 1209 391 273 121 24 chr12 81907547 81907671 -39349859 + RSINE1 SINE B4 2 137 -28 1 1209 243 0 0 0 chr12 81907680 81907707 -39349823 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1209 228 340 41 9 chr12 81909267 81909403 -39348127 - PB1 SINE Alu 0 149 7 1 1209 210 311 75 0 chr12 81909403 81909509 -39348021 - MIR SINE MIR -16 246 133 1 1209 330 263 0 13 chr12 81909520 81909597 -39347933 - ID4 SINE ID 0 83 8 1 1209 783 286 21 5 chr12 81909854 81910040 -39347490 - ID_B1 SINE B4 -34 190 2 1 1209 308 261 128 23 chr12 81910057 81910190 -39347340 - B1F SINE Alu -2 147 1 1 1209 756 258 6 6 chr12 81911537 81911716 -39345814 - B3A SINE B2 -18 180 2 1 1209 294 235 0 81 chr12 81912412 81912486 -39345044 + ID SINE ID 14 81 -143 1 1209 777 195 0 39 chr12 81912486 81912641 -39344889 + B1_Mur2 SINE Alu 1 149 0 1 1209 218 261 31 0 chr12 81912739 81912804 -39344726 - PB1D10 SINE Alu -4 113 47 1 1209 3131 14 3 0 chr12 81913915 81914266 -39343264 - L1Md_F2 LINE L1 -642 5940 5589 1 1209 454 250 9 37 chr12 81914286 81914394 -39343136 - PB1D10 SINE Alu 0 117 13 1 1209 758 120 17 0 chr12 81915238 81915355 -39342175 + PB1D9 SINE Alu 2 120 0 1 1209 272 94 0 19 chr12 81915355 81915409 -39342121 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 1 1209 23 33 0 0 chr12 81915968 81915998 -39341532 + AT_rich Low_complexity Low_complexity 1 30 0 1 1209 429 268 23 47 chr12 81916179 81916308 -39341222 - RSINE1 SINE B4 -38 127 2 1 1209 414 0 0 0 chr12 81916406 81916452 -39341078 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1209 252 0 0 0 chr12 81916452 81916479 -39341051 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1209 396 0 0 0 chr12 81916821 81916865 -39340665 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1209 445 266 266 23 chr12 81918521 81918698 -39338832 - ID_B1 SINE B4 -4 220 1 1 1209 375 130 0 0 chr12 81918715 81918792 -39338738 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 1 1209 351 0 0 0 chr12 81918787 81918826 -39338704 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1209 447 19 0 0 chr12 81918826 81918878 -39338652 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1209 267 75 25 0 chr12 81919425 81919465 -39338065 - B2_Mm2 SINE B2 -153 42 2 1 1209 207 272 146 7 chr12 81919471 81919608 -39337922 - MIRb SINE MIR 0 268 113 1 1209 1429 60 21 16 chr12 81919736 81919924 -39337606 - B2_Mm2 SINE B2 -5 190 2 1 1210 185 302 69 59 chr12 81920948 81921050 -39336480 + L2c LINE L2 3276 3378 -9 1 1210 394 226 21 21 chr12 81921529 81921624 -39335906 + B1_Mur1 SINE Alu 37 131 -18 1 1210 26 0 0 0 chr12 81922065 81922091 -39335439 + AT_rich Low_complexity Low_complexity 1 26 0 1 1210 306 275 125 0 chr12 81923156 81923236 -39334294 + PB1D10 SINE Alu 3 92 -25 1 1210 224 167 0 40 chr12 81923236 81923286 -39334244 + CT-rich Low_complexity Low_complexity 5 52 0 1 1210 1250 21 0 0 chr12 81923868 81924009 -39333521 + B1_Mus2 SINE Alu 1 141 -6 1 1210 492 18 0 0 chr12 81924009 81924066 -39333464 + (TAA)n Simple_repeat Simple_repeat 2 58 0 1 1210 225 0 0 0 chr12 81924555 81924580 -39332950 + (C)n Simple_repeat Simple_repeat 1 25 0 1 1210 293 291 135 10 chr12 81924915 81925019 -39332511 - PB1D10 SINE Alu 0 117 1 1 1210 232 369 0 12 chr12 81925463 81925548 -39331982 - L2c LINE L2 -50 3337 3254 1 1210 494 259 76 0 chr12 81925953 81926084 -39331446 + B1F1 SINE Alu 2 142 -7 1 1210 21 0 0 0 chr12 81926090 81926111 -39331419 + AT_rich Low_complexity Low_complexity 1 21 0 1 1210 541 111 104 61 chr12 81926119 81926234 -39331296 + Lx LINE L1 6531 6650 -4 1 1210 237 33 0 0 chr12 81926234 81926264 -39331266 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1210 233 325 115 29 chr12 81926396 81926570 -39330960 - L1M5 LINE L1 -373 5751 5563 1 1210 285 297 102 12 chr12 81926693 81926829 -39330701 + B3A SINE B2 70 216 0 1 1210 21 36 0 0 chr12 81927947 81927975 -39329555 + AT_rich Low_complexity Low_complexity 1 28 0 1 1210 873 195 0 0 chr12 81928113 81928262 -39329268 - B1_Mur1 SINE Alu 0 149 1 1 1210 28 0 0 0 chr12 81929064 81929092 -39328438 + AT_rich Low_complexity Low_complexity 1 28 0 1 1210 189 0 0 0 chr12 81929317 81929338 -39328192 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1210 350 290 84 32 chr12 81929485 81929680 -39327850 + MIR SINE MIR 11 211 -51 1 1210 205 297 76 8 chr12 81929798 81929917 -39327613 + MIR3 SINE MIR 75 201 -7 1 1210 440 256 23 60 chr12 81930730 81930863 -39326667 - B1F2 SINE Alu -21 128 1 1 1210 642 281 80 25 chr12 81930863 81931094 -39326436 + Cheshire DNA MER1_type 41 284 -2136 1 1210 525 188 28 9 chr12 81931103 81931209 -39326321 + PB1D10 SINE Alu 13 117 0 1 1210 207 0 0 0 chr12 81932105 81932128 -39325402 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1210 321 26 0 0 chr12 81932128 81932165 -39325365 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1210 576 279 98 42 chr12 81932211 81932476 -39325054 - B4A SINE B4 -12 280 1 1 1210 451 271 35 16 chr12 81932862 81932994 -39324536 - PB1D10 SINE Alu -16 131 3 1 1210 245 289 54 71 chr12 81932994 81933026 -39324504 - MT2B2 LTR ERVL -424 160 131 1 1210 1275 38 0 0 chr12 81933920 81934080 -39323450 + B2_Mm1a SINE B2 1 160 -33 1 1210 213 65 0 0 chr12 81934080 81934111 -39323419 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1210 189 0 0 0 chr12 81935103 81935124 -39322406 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1210 496 291 23 62 chr12 81935736 81935912 -39321618 - B4A SINE B4 0 292 124 1 1210 398 254 80 115 chr12 81935933 81936133 -39321397 - Lx5 LINE L1 -3 7047 6855 1 1210 8123 144 29 18 chr12 81936129 81938011 -39319519 - Lx5 LINE L1 -558 6492 4572 1 1210 1166 54 0 39 chr12 81938013 81938166 -39319364 + B1_Mus2 SINE Alu 1 147 0 1 1210 198 0 0 0 chr12 81938166 81938188 -39319342 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1210 234 361 74 49 chr12 81938214 81938377 -39319153 - B4A SINE B4 -115 177 11 1 1210 244 333 0 11 chr12 81939643 81939734 -39317796 + GA-rich Low_complexity Low_complexity 4 93 0 1 1210 1013 234 135 43 chr12 81940047 81940373 -39317157 + ORR1D2 LTR MaLR 7 362 -8 1 1210 840 254 84 83 chr12 81940628 81941015 -39316515 + MTE2b LTR MaLR 1 368 -2 1 1210 839 295 21 36 chr12 81941828 81942109 -39315421 - B4A SINE B4 0 292 16 1 1210 450 0 0 0 chr12 81943298 81943348 -39314182 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1210 525 269 42 21 chr12 81943349 81943493 -39314037 - B3A SINE B2 -42 156 10 1 1210 234 0 0 0 chr12 81944090 81944116 -39313414 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1210 829 133 54 8 chr12 81944116 81944245 -39313285 - B1_Mur4 SINE Alu -11 139 5 1 1210 374 261 239 0 chr12 81946176 81946339 -39311191 - B3 SINE B2 0 216 15 1 1210 201 108 0 0 chr12 81946414 81946451 -39311079 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1210 1188 68 0 0 chr12 81946479 81946626 -39310904 - B1_Mus2 SINE Alu 0 147 1 1 1210 241 232 0 0 chr12 81947214 81947270 -39310260 - B3 SINE B2 -7 209 154 1 1210 23 0 0 0 chr12 81948421 81948444 -39309086 + AT_rich Low_complexity Low_complexity 1 23 0 1 1210 1252 88 65 27 chr12 81949017 81949203 -39308327 + B2_Mm2 SINE B2 2 194 -1 1 1210 1145 35 43 0 chr12 81949436 81949577 -39307953 + B1_Mus2 SINE Alu 1 147 0 1 1210 830 215 124 10 chr12 81949918 81950111 -39307419 - B3 SINE B2 0 216 2 1 1210 624 244 16 0 chr12 81950385 81950512 -39307018 + B1_Mur1 SINE Alu 3 131 -18 1 1210 271 325 86 0 chr12 81950842 81950959 -39306571 + Charlie1b DNA MER1_type 42 168 -355 1 1210 252 0 0 0 chr12 81951015 81951043 -39306487 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1 1210 358 300 10 39 chr12 81951144 81951248 -39306282 - PB1 SINE Alu -25 102 2 1 1210 26 0 0 0 chr12 81951976 81952002 -39305528 + AT_rich Low_complexity Low_complexity 1 26 0 1 1210 397 225 88 40 chr12 81952002 81952150 -39305380 - Lx5 LINE L1 0 7050 6896 1 1210 1802 148 17 10 chr12 81952185 81952486 -39305044 + Lx5 LINE L1 5796 6098 -952 1 1210 831 164 29 0 chr12 81952604 81952744 -39304786 + B1_Mur4 SINE Alu 1 144 -6 1 1210 319 196 0 18 chr12 81953108 81953165 -39304365 - BC1_Mm scRNA scRNA -96 56 1 1 1210 433 127 14 14 chr12 81954315 81954387 -39303143 + B3 SINE B2 20 91 -125 1 1210 274 358 57 65 chr12 81957251 81957604 -39299926 + Tigger8 DNA MER2_type 255 604 -62 1 1210 1110 95 0 0 chr12 81958016 81958163 -39299367 + B1_Mus1 SINE Alu 2 148 0 1 1210 1275 107 23 0 chr12 81958223 81958400 -39299130 + B2_Mm2 SINE B2 2 182 -13 1 1210 295 64 387 11 chr12 81958541 81958634 -39298896 + B2_Mm2 SINE B2 64 191 -4 1 1210 228 323 28 0 chr12 81959914 81959997 -39297533 - B1F SINE Alu -30 90 1 1 1210 207 0 0 0 chr12 81960073 81960096 -39297434 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1210 216 97 0 0 chr12 81960842 81960873 -39296657 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1 1210 227 95 86 100 chr12 81960873 81960935 -39296595 - YREP_Mm Unknown Unknown -1518 294 232 1 1210 261 256 132 12 chr12 81960935 81960956 -39296574 + PB1D10 SINE Alu 23 115 -2 1 1210 573 192 208 0 chr12 81961039 81961159 -39296371 + B1_Mur1 SINE Alu 1 145 -4 1 1210 780 213 0 0 chr12 81961165 81961306 -39296224 + B1_Mur2 SINE Alu 1 141 -8 1 1210 195 129 0 0 chr12 81961416 81961447 -39296083 + (TATG)n Simple_repeat Simple_repeat 4 34 0 1 1210 370 255 97 10 chr12 81961448 81961551 -39295979 - PB1D10 SINE Alu -5 112 1 1 1210 355 194 15 0 chr12 81961694 81961761 -39295769 + B1_Mur2 SINE Alu 68 135 -14 1 1210 261 0 0 0 chr12 81961786 81961815 -39295715 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 1210 1125 100 6 0 chr12 81961816 81961976 -39295554 - B2_Mm2 SINE B2 -33 162 2 1 1210 362 195 51 13 chr12 81962020 81962098 -39295432 + B3A SINE B2 2 82 -116 1 1210 203 371 63 14 chr12 81962282 81962424 -39295106 + MIRb SINE MIR 48 196 -72 1 1210 283 301 81 22 chr12 81963864 81964000 -39293530 - MIRb SINE MIR 0 268 125 1 1210 196 158 0 73 chr12 81965271 81965312 -39292218 + MIR SINE MIR 201 238 -24 1 1210 705 24 0 0 chr12 81965405 81965488 -39292042 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 1 1210 207 0 0 0 chr12 81965862 81965885 -39291645 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 1 1210 183 80 0 0 chr12 81965885 81965910 -39291620 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1 1210 395 245 147 0 chr12 81965911 81966013 -39291517 - PB1D10 SINE Alu 0 117 1 1 1210 226 195 11 125 chr12 81966131 81966219 -39291311 - MTEb LTR MaLR 0 379 302 1 1210 22 80 0 0 chr12 81966651 81966701 -39290829 + AT_rich Low_complexity Low_complexity 1 50 0 1 1210 233 329 27 0 chr12 81967519 81967592 -39289938 + ID4_ SINE ID 2 76 -7 1 1210 355 110 0 128 chr12 81967608 81967702 -39289828 + L1Md_F3 LINE L1 6503 6584 0 1 1210 1163 62 0 40 chr12 81967706 81967858 -39289672 + B1_Mm SINE Alu 1 146 -1 1 1210 210 71 0 0 chr12 81967860 81967888 -39289642 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1210 203 351 36 43 chr12 81968731 81968889 -39288641 + MIR SINE MIR 19 176 -92 1 1210 1280 267 76 42 chr12 81970152 81970771 -39286759 - RMER19B LTR ERVK 0 902 85 1 1210 194 267 25 51 chr12 81971667 81971746 -39285784 - MER5B DNA MER1_type -82 96 20 1 1210 1069 148 37 21 chr12 81972194 81972381 -39285149 - B2_Mm2 SINE B2 -4 191 2 1 1210 1268 34 0 0 chr12 81972542 81972689 -39284841 + B1_Mm SINE Alu 1 147 0 1 1210 526 150 0 0 chr12 81972798 81972878 -39284652 + B1_Mus1 SINE Alu 3 82 -66 1 1210 285 286 37 101 chr12 81972993 81973211 -39284319 + L1MC4 LINE L1 7372 7575 -467 1 1210 873 246 21 5 chr12 81973212 81973400 -39284130 + B3 SINE B2 3 193 -23 1 1210 373 104 192 13 chr12 81973507 81973585 -39283945 - MTC LTR MaLR 0 421 330 1 1210 1952 113 9 59 chr12 81973589 81973927 -39283603 - ORR1A4 LTR MaLR -8 321 1 1 1210 1436 164 108 20 chr12 81973927 81974229 -39283301 - MTC LTR MaLR -90 331 3 1 1210 385 238 117 19 chr12 81974516 81974619 -39282911 - PB1D9 SINE Alu -6 114 2 1 1210 991 234 9 19 chr12 81974630 81974843 -39282687 - B3 SINE B2 -5 211 1 1 1210 289 332 103 27 chr12 81974843 81975066 -39282464 + MIRb SINE MIR 26 265 -3 1 1210 1154 42 28 0 chr12 81975869 81976012 -39281518 + B1_Mus2 SINE Alu 1 147 0 1 1210 181 0 69 0 chr12 81976012 81976041 -39281489 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1210 233 333 99 26 chr12 81976196 81976347 -39281183 - MIR SINE MIR -99 163 2 1 1210 432 268 7 86 chr12 81976930 81977069 -39280461 - B1_Mur2 SINE Alu -19 130 3 1 1210 238 276 100 20 chr12 81977229 81977329 -39280201 + PB1D10 SINE Alu 1 108 -9 1 1210 680 210 0 0 chr12 81977340 81977464 -39280066 + RSINE1 SINE B4 4 127 -38 1 1210 299 203 14 0 chr12 81979457 81979531 -39277999 + CT-rich Low_complexity Low_complexity 1 75 0 1 1210 28 0 0 0 chr12 81981665 81981693 -39275837 + AT_rich Low_complexity Low_complexity 1 28 0 1 1210 231 200 0 0 chr12 81981910 81981950 -39275580 + tRNA-Ala-GCA tRNA tRNA 29 68 -7 1 1210 685 215 169 51 chr12 81981968 81982223 -39275307 + B4A SINE B4 8 292 0 1 1210 355 210 99 10 chr12 81983202 81983303 -39274227 + PB1D9 SINE Alu 3 112 -8 1 1210 288 196 0 0 chr12 81983461 81983512 -39274018 + B1_Mur1 SINE Alu 82 132 -17 1 1210 1082 81 0 39 chr12 81983519 81983673 -39273857 + B1_Mus1 SINE Alu 1 148 0 1 1210 329 208 14 0 chr12 81983953 81984025 -39273505 + PB1D10 SINE Alu 45 117 0 1 1210 200 276 34 17 chr12 81984123 81984182 -39273348 - MIRc SINE MIR -172 96 37 1 1210 207 0 0 0 chr12 81984494 81984517 -39273013 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1210 758 87 167 0 chr12 81984521 81984647 -39272883 - B1_Mus2 SINE Alu 0 147 1 1 1210 219 276 0 0 chr12 81984749 81984825 -39272705 + CT-rich Low_complexity Low_complexity 1 76 0 1 1210 364 237 20 108 chr12 81985032 81985167 -39272363 - Lx7 LINE L1 -695 7001 6863 1 1210 1632 77 360 42 chr12 81985419 81985730 -39271800 - RMER17C LTR ERVK 0 410 1 1 1210 444 37 0 0 chr12 81985796 81985850 -39271680 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1210 310 102 0 48 chr12 81987333 81987345 -39270185 + polypyrimidine Low_complexity Low_complexity 50 60 0 1 1210 756 61 0 0 chr12 81987345 81987443 -39270087 + (TC)n Simple_repeat Simple_repeat 1 98 0 1 1210 310 102 0 48 chr12 81987443 81987492 -39270038 + polypyrimidine Low_complexity Low_complexity 2 49 0 1 1210 1231 28 7 0 chr12 81987581 81987726 -39269804 + B1_Mm SINE Alu 1 146 -1 1 1210 283 91 91 0 chr12 81987779 81987823 -39269707 - B1_Mus2 SINE Alu -35 112 65 1 1210 243 0 0 0 chr12 81987823 81987850 -39269680 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1210 996 98 0 7 chr12 81987850 81987994 -39269536 - B1_Mus1 SINE Alu 0 148 6 1 1210 400 231 0 133 chr12 81987894 81988014 -39269516 - MT2B LTR ERVL -343 258 155 1 1210 376 178 41 0 chr12 81987999 81988072 -39269458 - B1_Mus1 SINE Alu -70 78 3 1 1210 291 282 0 23 chr12 81988389 81988476 -39269054 + ID_B1 SINE B4 82 166 -58 1 1210 320 251 9 23 chr12 81988400 81988522 -39269008 + PB1D10 SINE Alu 12 134 -15 1 1210 271 253 0 74 chr12 81988521 81988602 -39268928 + ID4_ SINE ID 6 80 -3 1 1210 215 333 31 31 chr12 81988602 81988617 -39268913 + ID_B1 SINE B4 6 101 -123 1 1210 427 236 95 54 chr12 81988928 81989076 -39268454 + B3A SINE B2 8 161 -37 1 1210 742 263 17 6 chr12 81989128 81989304 -39268226 + B3 SINE B2 2 179 -37 1 1210 552 202 147 0 chr12 81989322 81989451 -39268079 + B1_Mur1 SINE Alu 2 149 0 1 1210 318 291 101 29 chr12 81989330 81989468 -39268062 + B4A SINE B4 95 242 -50 1 1210 237 239 113 0 chr12 81989460 81989531 -39267999 + ID_B1 SINE B4 146 224 0 1 1210 210 45 44 22 chr12 81989587 81989621 -39267909 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1210 949 83 241 6 chr12 81989621 81989779 -39267751 + B2_Mm2 SINE B2 1 195 0 1 1210 210 45 44 22 chr12 81989779 81989789 -39267741 + (CAAAAA)n Simple_repeat Simple_repeat 2 11 0 1 1210 928 53 53 0 chr12 81989882 81990014 -39267516 - B1_Mm SINE Alu 0 147 9 1 1210 525 32 0 0 chr12 81990024 81990087 -39267443 + (TTCTC)n Simple_repeat Simple_repeat 3 65 0 1 1210 603 190 9 0 chr12 81990115 81990231 -39267299 - B1_Mur2 SINE Alu -30 119 3 1 1210 302 245 32 106 chr12 81990127 81990250 -39267280 - MT2B LTR ERVL -336 265 152 1 1210 318 301 88 0 chr12 81990280 81990393 -39267137 + L1MC4 LINE L1 6614 6736 -1146 1 1210 463 219 40 6 chr12 81990434 81990605 -39266925 - B3 SINE B2 0 216 1 1 1210 844 199 33 28 chr12 81990636 81990848 -39266682 + B3 SINE B2 2 214 -2 1 1210 354 286 77 106 chr12 81990851 81991014 -39266516 + L1MC4 LINE L1 6798 6961 -1081 1 1210 1149 216 5 0 chr12 81991014 81991218 -39266312 - B3 SINE B2 -7 209 5 1 1210 354 286 77 106 chr12 81991218 81991289 -39266241 + L1MC4 LINE L1 6962 7025 -1017 1 1210 918 69 0 0 chr12 81991290 81991421 -39266109 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1210 267 172 14 86 chr12 81991593 81991663 -39265867 + RMER15 LTR ERVL 354 418 -157 1 1210 1019 142 26 16 chr12 81991820 81992013 -39265517 - B2_Mm2 SINE B2 0 195 1 1 1210 440 226 56 16 chr12 81992071 81992197 -39265333 + L1MC4 LINE L1 7501 7631 -411 1 1210 405 0 0 0 chr12 81992307 81992352 -39265178 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1210 859 16 114 38 chr12 81992514 81992645 -39264885 + B1_Mus1 SINE Alu 8 148 0 1 1210 228 86 0 0 chr12 81992645 81992680 -39264850 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1210 882 169 2 66 chr12 81992690 81992898 -39264632 + B3 SINE B2 1 198 0 1 1210 609 302 105 11 chr12 81992961 81993313 -39264217 - MLT1A1 LTR MaLR -5 403 19 1 1210 216 0 0 0 chr12 81993481 81993505 -39264025 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1210 1791 126 14 58 chr12 81993607 81993952 -39263578 + Lx3B LINE L1 6643 6972 -1 1 1210 304 170 0 69 chr12 81993977 81994078 -39263452 + Lx4B LINE L1 6965 7058 0 1 1210 559 252 7 26 chr12 81994283 81994438 -39263092 - B3A SINE B2 0 198 47 1 1210 1097 93 0 6 chr12 81995221 81995383 -39262147 - B2_Mm2 SINE B2 -30 165 5 1 1210 294 29 0 0 chr12 81995456 81995491 -39262039 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1210 472 84 60 12 chr12 81995496 81995580 -39261950 - B1_Mur4 SINE Alu -1 149 62 1 1210 382 188 165 0 chr12 81995556 81995641 -39261889 + RSINE1 SINE B4 53 151 -14 1 1210 816 203 13 6 chr12 81995673 81995832 -39261698 + B3 SINE B2 28 187 -29 1 1210 300 53 0 0 chr12 81995833 81995871 -39261659 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1210 366 316 181 53 chr12 81996515 81996885 -39260645 - MLT1C LTR MaLR -5 462 45 1 1210 695 145 15 30 chr12 81997520 81997655 -39259875 + B3 SINE B2 84 216 0 1 1210 324 240 92 8 chr12 81997669 81997799 -39259731 + MER90 LTR ERV1 322 462 -113 1 1210 275 287 128 57 chr12 81997873 81998224 -39259306 - L1M5 LINE L1 -2156 3990 3615 1 1210 459 254 10 0 chr12 81998226 81998340 -39259190 - PB1D10 SINE Alu -7 120 4 1 1210 266 221 66 104 chr12 81998247 81998353 -39259177 - MT2B LTR ERVL -349 252 151 1 1210 235 352 54 31 chr12 81998261 81998390 -39259140 - B4A SINE B4 -118 174 43 1 1210 746 159 0 0 chr12 81998379 81998517 -39259013 - B1_Mur3 SINE Alu 0 149 12 1 1210 965 8 0 0 chr12 81998608 81998726 -39258804 + B2_Mm1a SINE B2 1 118 -75 1 1210 617 286 0 61 chr12 81998799 81998937 -39258593 - RSINE1 SINE B4 -10 155 27 1 1210 2843 106 16 0 chr12 81998937 81999325 -39258205 + ORR1B1 LTR MaLR 1 394 0 1 1210 617 286 0 61 chr12 81999325 81999350 -39258180 - RSINE1 SINE B4 -139 26 2 1 1210 831 72 0 0 chr12 81999481 81999592 -39257938 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 1 1210 379 222 188 16 chr12 81999606 81999734 -39257796 + RMER15 LTR ERVL 110 259 -316 1 1210 723 227 113 0 chr12 81999760 81999945 -39257585 - RLTR18B LTR ERVK -5 507 302 1 1210 1326 105 10 10 chr12 82000015 82000207 -39257323 + B2_Mm1t SINE B2 2 193 0 1 1210 327 104 0 0 chr12 82000207 82000255 -39257275 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1210 985 229 65 12 chr12 82000262 82000510 -39257020 - RLTR18B LTR ERVK -251 261 1 3 1210 1475 174 96 26 chr12 82000510 82000812 -39256718 + RMER15 LTR ERVL 253 575 0 4 1210 741 259 161 0 chr12 82000812 82001005 -39256525 + RMER15-int LTR ERVL 1 224 -4775 4 1210 462 168 135 8 chr12 82001005 82001131 -39256399 - RLTR30 LTR ERV1 0 379 238 5 1210 722 244 50 28 chr12 82001282 82001463 -39256067 - RLTR30 LTR ERV1 -194 185 1 5 1210 999 284 30 0 chr12 82001463 82001695 -39255835 + RMER15-int LTR ERVL 221 459 -4540 4 1210 5250 130 24 28 chr12 82001695 82002689 -39254841 - RMER12 LTR ERVK 0 1404 1 6 1210 596 217 118 7 chr12 82002689 82002842 -39254688 + RMER15-int LTR ERVL 454 623 -4376 4 1210 183 80 0 0 chr12 82003037 82003062 -39254468 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 7 1210 828 138 0 35 chr12 82003064 82003207 -39254323 - B1_Mus1 SINE Alu -1 147 10 8 1210 6277 243 67 42 chr12 82003211 82003658 -39253872 + RMER15-int LTR ERVL 897 1343 -3656 4 1210 923 212 69 243 chr12 82003658 82004119 -39253411 - ORR1C2 LTR MaLR -3 381 1 9 1210 6277 243 67 42 chr12 82004119 82005338 -39252192 + RMER15-int LTR ERVL 1344 2605 -2394 4 1210 1799 129 5 119 chr12 82005338 82005708 -39251822 + ORR1A4 LTR MaLR 1 328 -1 1 1210 3485 160 14 8 chr12 82005712 82006342 -39251188 + ORR1A4-int LTR MaLR 7 640 -1323 1 1210 1075 159 148 41 chr12 82006384 82006627 -39250903 + MT2B LTR ERVL 1 269 -332 1 1210 2750 140 63 43 chr12 82006418 82007001 -39250529 + ORR1A4-int LTR MaLR 646 1240 -723 1 1210 2331 195 53 92 chr12 82007002 82007619 -39249911 + RMER19C LTR ERVK 1 593 -18 1 1210 2746 141 101 114 chr12 82007624 82008327 -39249203 + ORR1A4-int LTR MaLR 1223 1916 -47 1 1210 2222 130 49 0 chr12 82008327 82008696 -39248834 - ORR1B1 LTR MaLR 0 394 8 1 1210 387 57 19 0 chr12 82008700 82008753 -39248777 + ORR1A4-int LTR MaLR 1910 1963 0 1 1210 841 137 0 40 chr12 82008760 82008912 -39248618 + ORR1A4 LTR MaLR 41 186 -208 1 1210 625 227 36 30 chr12 82009705 82009873 -39247657 - B3A SINE B2 -24 174 6 1 1210 602 305 8 106 chr12 82009898 82009936 -39247594 + B3 SINE B2 2 39 -177 1 1210 1125 83 0 0 chr12 82009936 82010080 -39247450 + B1_Mm SINE Alu 1 144 -3 1 1210 602 305 8 106 chr12 82010080 82010276 -39247254 + B3 SINE B2 40 213 -3 1 1210 1202 36 0 0 chr12 82010276 82010416 -39247114 + B1_Mm SINE Alu 2 141 -6 1 1210 351 0 0 0 chr12 82010418 82010457 -39247073 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1210 447 19 0 0 chr12 82011008 82011060 -39246470 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1210 811 242 97 65 chr12 82011087 82011365 -39246165 - B4A SINE B4 -5 287 1 2 1210 989 219 157 8 chr12 82011909 82012072 -39245458 - MTD LTR MaLR -112 307 106 2 1210 250 26 51 0 chr12 82012072 82012111 -39245419 + (CATA)n Simple_repeat Simple_repeat 3 43 0 2 1210 989 219 157 8 chr12 82012111 82012214 -39245316 - MTD LTR MaLR -314 105 2 2 1210 981 19 0 0 chr12 82012463 82012570 -39244960 + U6 snRNA snRNA 1 107 0 2 1210 32855 64 1 1 chr12 82012571 82016765 -39240765 + L1Md_F2 LINE L1 1390 5586 -297 2 1210 8308 41 1 6 chr12 82016765 82017766 -39239764 + L1Md_F2 LINE L1 5587 6582 0 2 1210 647 208 8 15 chr12 82017778 82017910 -39239620 + RSINE1 SINE B4 3 133 -32 2 1210 909 163 7 0 chr12 82018110 82018257 -39239273 + B1_Mus1 SINE Alu 1 148 0 2 1210 876 46 0 0 chr12 82018267 82018376 -39239154 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 2 1210 1442 95 0 0 chr12 82018418 82018607 -39238923 - B2_Mm2 SINE B2 -6 189 1 2 1210 225 0 0 0 chr12 82018789 82018814 -39238716 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1210 270 0 0 0 chr12 82019132 82019162 -39238368 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1210 639 71 0 0 chr12 82019460 82019545 -39237985 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 1210 1149 83 0 0 chr12 82019552 82019709 -39237821 - B2_Mm2 SINE B2 -38 157 1 3 1210 666 256 40 6 chr12 82019747 82019920 -39237610 - B3A SINE B2 -18 180 2 3 1210 289 190 16 180 chr12 82019920 82020042 -39237488 - L1M2 LINE L1 -466 5831 5730 3 1210 1022 45 0 0 chr12 82020066 82020198 -39237332 - B1_Mus1 SINE Alu 0 148 17 3 1210 686 62 10 0 chr12 82020198 82020294 -39237236 + (TC)n Simple_repeat Simple_repeat 1 97 0 3 1210 2004 211 150 30 chr12 82020552 82021221 -39236309 + RMER13A LTR ERVK 1 697 -211 3 1210 998 86 65 0 chr12 82021402 82021541 -39235989 - B1_Mus1 SINE Alu 0 148 1 3 1210 1188 68 0 0 chr12 82021554 82021701 -39235829 - B1_Mus1 SINE Alu 0 148 2 3 1210 362 139 172 0 chr12 82021923 82022026 -39235504 - B2_Mm2 SINE B2 -8 187 46 4 1210 859 94 8 0 chr12 82022048 82022175 -39235355 - B2_Mm1a SINE B2 -65 128 1 4 1210 816 278 56 40 chr12 82022279 82022601 -39234929 - MTD LTR MaLR -46 373 47 4 1210 310 198 225 0 chr12 82022648 82022759 -39234771 - MTC-int LTR MaLR -4 1254 1119 4 1210 572 99 10 62 chr12 82022759 82022856 -39234674 + BC1_Mm scRNA scRNA 2 93 -59 4 1210 479 228 170 21 chr12 82022852 82022891 -39234639 - MTC-int LTR MaLR -124 1134 1080 4 1210 774 194 0 40 chr12 82022891 82023041 -39234489 + B1_Mur2 SINE Alu 3 146 -3 4 1210 479 231 186 37 chr12 82023041 82023230 -39234300 - MTC-int LTR MaLR -179 1079 919 4 1210 1410 162 138 35 chr12 82023541 82023911 -39233619 - RMER17C LTR ERVK 0 410 3 4 1210 309 280 59 10 chr12 82024156 82024257 -39233273 - PB1D7 SINE Alu -13 107 2 4 1210 234 0 0 0 chr12 82024294 82024320 -39233210 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1210 477 136 0 0 chr12 82025596 82025699 -39231831 + (GA)n Simple_repeat Simple_repeat 1 103 0 4 1210 633 269 26 0 chr12 82025708 82025864 -39231666 - B3A SINE B2 -38 160 1 5 1210 820 180 7 0 chr12 82025961 82026100 -39231430 - B1_Mur4 SINE Alu -10 140 1 5 1210 1150 62 0 7 chr12 82026313 82026460 -39231070 - B1_Mus2 SINE Alu 0 147 2 5 1210 1403 55 77 0 chr12 82026497 82026522 -39231008 - B2_Mm2 SINE B2 0 195 171 5 1210 240 35 0 0 chr12 82026522 82026551 -39230979 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 5 1210 1403 55 77 0 chr12 82026551 82026706 -39230824 - B2_Mm2 SINE B2 -25 170 2 5 1210 540 259 19 34 chr12 82026925 82027072 -39230458 - RMER20B LTR ERVK -369 147 2 5 1210 1240 34 0 0 chr12 82027362 82027509 -39230021 + B1_Mm SINE Alu 1 147 0 5 1210 231 114 0 0 chr12 82027509 82027553 -39229977 + (A)n Simple_repeat Simple_repeat 1 44 0 5 1210 226 264 27 14 chr12 82027592 82027665 -39229865 - ORR1D2 LTR MaLR -12 358 285 5 1210 306 0 0 0 chr12 82027856 82027890 -39229640 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1210 756 90 0 18 chr12 82027890 82027992 -39229538 - B1_Mus2 SINE Alu -10 137 36 6 1210 446 222 81 0 chr12 82028051 82028150 -39229380 - B1F2 SINE Alu -6 143 37 6 1210 27 0 0 0 chr12 82028160 82028187 -39229343 + AT_rich Low_complexity Low_complexity 1 27 0 6 1210 473 302 8 16 chr12 82028188 82028316 -39229214 - RSINE1 SINE B4 -2 163 37 6 1210 747 211 0 0 chr12 82028392 82028563 -39228967 + CT-rich Low_complexity Low_complexity 3 173 0 6 1210 203 161 31 46 chr12 82028577 82028642 -39228888 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 6 1210 483 183 130 37 chr12 82028642 82028750 -39228780 - B1_Mus2 SINE Alu -29 118 1 6 1210 222 171 0 0 chr12 82028764 82028805 -39228725 + CT-rich Low_complexity Low_complexity 3 43 0 6 1210 1127 73 0 0 chr12 82029206 82029343 -39228187 - B1_Mus1 SINE Alu -10 138 2 6 1210 1691 150 311 3 chr12 82029419 82029799 -39227731 - RLTR19 LTR ERVK 0 499 3 6 1210 322 235 0 29 chr12 82030198 82030268 -39227262 + PB1D10 SINE Alu 48 115 -2 7 1210 414 260 92 30 chr12 82030485 82030616 -39226914 + ID_B1 SINE B4 86 224 0 7 1210 441 0 0 0 chr12 82030901 82030950 -39226580 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 1210 344 229 0 0 chr12 82031016 82031086 -39226444 + B3 SINE B2 2 71 -145 7 1210 1503 171 49 78 chr12 82031631 82031716 -39225814 + MTE2b LTR MaLR 5 88 -291 7 1210 1428 70 5 5 chr12 82031716 82031904 -39225626 - B2_Mm1a SINE B2 -3 190 3 7 1210 1503 171 49 78 chr12 82031904 82032204 -39225326 + MTE2b LTR MaLR 89 379 0 7 1210 1605 133 128 51 chr12 82032722 82033111 -39224419 + RMER10A LTR ERVL 18 436 -6 7 1210 574 274 45 13 chr12 82033169 82033324 -39224206 - MLT2B3 LTR ERVL -36 518 359 7 1210 648 93 46 0 chr12 82033448 82033556 -39223974 - B2_Mm2 SINE B2 -81 114 2 7 1210 279 0 0 0 chr12 82033599 82033630 -39223900 + (CACAG)n Simple_repeat Simple_repeat 5 35 0 7 1210 1472 53 37 0 chr12 82034178 82034366 -39223164 - B2_Mm2 SINE B2 0 195 1 8 1210 806 67 244 0 chr12 82034484 82034603 -39222927 + B1_Mus1 SINE Alu 1 148 0 8 1210 180 0 0 0 chr12 82034603 82034623 -39222907 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1210 430 132 0 26 chr12 82034678 82034756 -39222774 - ORR1A4 LTR MaLR -252 77 2 8 1210 1212 27 7 0 chr12 82035209 82035355 -39222175 - B1_Mus2 SINE Alu 0 147 1 8 1210 547 289 14 21 chr12 82035474 82035619 -39221911 - Lx8 LINE L1 -154 7319 7176 8 1210 613 220 21 21 chr12 82035637 82035781 -39221749 - ID_B1 SINE B4 -4 220 77 8 1210 2121 149 42 64 chr12 82036547 82036998 -39220532 - RMER10A LTR ERVL 0 442 2 8 1210 22 0 0 0 chr12 82037055 82037077 -39220453 + AT_rich Low_complexity Low_complexity 1 22 0 8 1210 815 150 0 0 chr12 82037163 82037290 -39220240 - B1_Mur4 SINE Alu -22 128 2 8 1210 270 0 0 0 chr12 82037337 82037367 -39220163 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1210 328 323 105 91 chr12 82037368 82037469 -39220061 - B3A SINE B2 -53 145 43 9 1210 1177 79 48 48 chr12 82037469 82037656 -39219874 - B2_Mm1t SINE B2 -6 187 1 9 1210 328 323 105 91 chr12 82037656 82037697 -39219833 - B3A SINE B2 -156 42 1 9 1210 408 230 177 101 chr12 82037736 82037934 -39219596 - B3 SINE B2 -3 213 1 9 1210 757 179 7 0 chr12 82038119 82038259 -39219271 - B1_Mur4 SINE Alu -9 141 1 9 1210 188 278 56 0 chr12 82038395 82038485 -39219045 - L2 LINE L2 -1365 2054 1960 9 1210 563 233 24 108 chr12 82038826 82039003 -39218527 + RSINE1 SINE B4 1 165 0 9 1210 363 186 12 24 chr12 82039017 82039182 -39218348 + (CA)n Simple_repeat Simple_repeat 1 163 0 9 1210 1216 110 66 0 chr12 82039197 82039379 -39218151 + B2_Mm2 SINE B2 2 195 0 9 1210 889 50 0 0 chr12 82039428 82039547 -39217983 - B1_Mus1 SINE Alu 0 148 30 9 1210 511 277 33 88 chr12 82040001 82040274 -39217256 + MLT1C LTR MaLR 134 391 -76 1 1210 370 320 65 56 chr12 82040327 82040559 -39216971 + MLT1F1 LTR MaLR 129 362 -207 1 1210 1319 71 48 27 chr12 82040802 82040989 -39216541 - B2_Mm2 SINE B2 -2 193 3 1 1210 499 323 7 0 chr12 82041063 82041218 -39216312 + ID_B1 SINE B4 2 157 -67 1 1210 258 105 0 0 chr12 82041394 82041432 -39216098 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 1 1210 839 155 0 0 chr12 82041452 82041594 -39215936 - B1_Mus2 SINE Alu -2 145 4 1 1210 265 164 48 16 chr12 82042099 82042161 -39215369 - ID_B1 SINE B4 -77 147 84 1 1210 373 93 0 0 chr12 82042108 82042162 -39215368 - B1_Mus1 SINE Alu -93 55 2 1 1210 1310 85 37 5 chr12 82042179 82042368 -39215162 - B2_Mm2 SINE B2 0 195 1 1 1210 3584 33 28 16 chr12 82042488 82042919 -39214611 - RLTR10C LTR ERVK 0 436 1 1 1210 187 245 0 20 chr12 82042950 82043000 -39214530 + MER5B DNA MER1_type 77 125 -53 1 1210 1033 204 8 30 chr12 82043154 82043391 -39214139 + MTD LTR MaLR 3 234 -185 1 1210 429 210 145 0 chr12 82043560 82043684 -39213846 + MTD LTR MaLR 278 419 0 1 1210 285 239 192 0 chr12 82043913 82044043 -39213487 - RMER15 LTR ERVL 0 575 421 1 1210 344 276 159 24 chr12 82044436 82044562 -39212968 - B1_Mur1 SINE Alu -6 143 1 1 1210 778 35 244 25 chr12 82044833 82044952 -39212578 - B1_Mus1 SINE Alu 0 148 4 1 1210 180 0 0 0 chr12 82045335 82045355 -39212175 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1210 300 158 197 0 chr12 82045355 82045431 -39212099 - B1_Mur4 SINE Alu 0 150 60 1 1210 1129 70 0 0 chr12 82045754 82045896 -39211634 - B1_Mus2 SINE Alu -5 142 1 1 1210 1095 51 0 0 chr12 82045946 82046084 -39211446 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 1 1210 245 239 54 11 chr12 82046086 82046179 -39211351 + PB1D9 SINE Alu 5 101 -19 1 1210 185 65 32 0 chr12 82046555 82046586 -39210944 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1210 233 226 0 19 chr12 82047761 82047815 -39209715 + PB1D9 SINE Alu 9 61 -59 1 1210 180 77 0 0 chr12 82047835 82047861 -39209669 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1210 28 0 0 0 chr12 82048055 82048083 -39209447 + AT_rich Low_complexity Low_complexity 1 28 0 1 1210 1083 43 41 34 chr12 82048083 82048229 -39209301 - B1_Mm SINE Alu 0 147 1 1 1210 24 91 0 0 chr12 82048920 82048986 -39208544 + AT_rich Low_complexity Low_complexity 1 66 0 1 1210 38 0 0 0 chr12 82049711 82049749 -39207781 + AT_rich Low_complexity Low_complexity 1 38 0 1 1210 190 51 50 25 chr12 82049775 82049815 -39207715 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1211 272 211 312 8 chr12 82051902 82052018 -39205512 - B1_Mus1 SINE Alu 0 150 1 1 1211 690 206 139 6 chr12 82052057 82052223 -39205307 - B3 SINE B2 -20 196 9 1 1211 1297 76 5 46 chr12 82052623 82052817 -39204713 - B2_Mm1t SINE B2 -4 189 4 1 1211 312 221 59 144 chr12 82052977 82053130 -39204400 - B1_Mur1 SINE Alu -5 144 5 1 1211 477 16 48 0 chr12 82053450 82053513 -39204017 + B2_Mm2 SINE B2 37 102 -93 1 1211 214 188 42 0 chr12 82054352 82054400 -39203130 - PB1D10 SINE Alu 0 117 68 1 1211 1037 219 69 52 chr12 82054798 82055087 -39202443 + ORR1D1 LTR MaLR 6 299 -75 1 1211 349 237 53 0 chr12 82055630 82055706 -39201824 + ID4 SINE ID 4 83 0 1 1211 222 250 0 93 chr12 82055749 82055824 -39201706 + PB1D10 SINE Alu 50 117 0 1 1211 317 277 128 10 chr12 82055846 82055948 -39201582 + RSINE1 SINE B4 8 121 -44 1 1211 337 207 329 13 chr12 82056011 82056163 -39201367 - B3 SINE B2 -16 200 1 1 1211 24 53 0 0 chr12 82056270 82056308 -39201222 + AT_rich Low_complexity Low_complexity 1 38 0 1 1211 1125 28 42 0 chr12 82056467 82056609 -39200921 - B1_Mus1 SINE Alu 0 148 1 1 1211 215 339 0 0 chr12 82057252 82057314 -39200216 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1211 1284 120 16 5 chr12 82057480 82057672 -39199858 - B2_Mm2 SINE B2 0 195 2 1 1211 1297 105 33 0 chr12 82057777 82057958 -39199572 - B2_Mm2 SINE B2 -7 188 2 1 1211 1043 164 87 0 chr12 82058325 82058532 -39198998 + URR1B DNA MER1_type 1 225 0 1 1211 312 253 107 12 chr12 82059570 82059654 -39197876 + URR1B DNA MER1_type 1 92 -133 1 1211 857 37 0 0 chr12 82059664 82059772 -39197758 + B1_Mm SINE Alu 40 147 0 1 1211 474 204 30 134 chr12 82059785 82059854 -39197676 + URR1B DNA MER1_type 79 136 -89 1 1211 1180 56 0 0 chr12 82059854 82059997 -39197533 + B1_Mus1 SINE Alu 1 143 -5 1 1211 474 204 30 134 chr12 82059997 82060091 -39197439 + URR1B DNA MER1_type 137 225 0 1 1211 462 324 65 0 chr12 82060091 82060261 -39197269 - MARNA DNA Mariner -238 348 168 1 1211 360 197 0 46 chr12 82060604 82060699 -39196831 - B1_Mur1 SINE Alu -1 148 61 1 1211 270 342 82 71 chr12 82061114 82061369 -39196161 + ORR1E LTR MaLR 54 311 -48 1 1211 281 54 0 0 chr12 82061936 82061973 -39195557 + B1_Mus2 SINE Alu 1 37 -110 1 1211 189 74 0 0 chr12 82061989 82062016 -39195514 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1211 585 0 0 0 chr12 82062027 82062092 -39195438 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 1 1211 1207 35 0 7 chr12 82062092 82062237 -39195293 - B1_Mm SINE Alu -2 145 2 1 1211 509 226 44 72 chr12 82062240 82062423 -39195107 + ORR1E LTR MaLR 132 321 -49 1 1211 495 224 46 138 chr12 82062426 82062643 -39194887 + B3 SINE B2 9 205 -11 1 1211 381 253 355 20 chr12 82062647 82063038 -39194492 + L1M5 LINE L1 4576 5097 -1049 1 1211 1125 88 0 13 chr12 82063047 82063197 -39194333 + B1_Mus1 SINE Alu 1 148 0 1 1211 434 156 26 0 chr12 82063367 82063436 -39194094 + B1_Mur3 SINE Alu 70 140 -9 1 1211 696 24 0 0 chr12 82063436 82063518 -39194012 + (CAAG)n Simple_repeat Simple_repeat 2 83 0 1 1211 841 202 34 16 chr12 82063777 82063966 -39193564 + MTD LTR MaLR 1 192 -215 1 1211 470 46 0 15 chr12 82064028 82064094 -39193436 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1211 1185 98 58 37 chr12 82064104 82064295 -39193235 + B2_Mm2 SINE B2 1 195 0 1 1211 585 237 22 22 chr12 82064299 82064433 -39193097 + ID_B1 SINE B4 82 215 -9 1 1211 431 216 67 67 chr12 82064433 82064448 -39193082 + B1F SINE Alu 1 149 0 1 1211 323 330 17 0 chr12 82064958 82065073 -39192457 - PB1D10 SINE Alu 0 117 1 1 1211 310 250 26 6 chr12 82065073 82065165 -39192365 - PB1 SINE Alu -24 93 2 1 1211 334 371 57 0 chr12 82065748 82065907 -39191623 + MER102b DNA MER1_type 2 169 -172 1 1211 1072 175 24 39 chr12 82065908 82066116 -39191414 + B3 SINE B2 1 205 -11 1 1211 1022 102 7 45 chr12 82066136 82066290 -39191240 + B1_Mur3 SINE Alu 1 148 -1 1 1211 1059 104 7 0 chr12 82066644 82066788 -39190742 + B1_Mus1 SINE Alu 2 146 -2 1 1211 690 13 0 0 chr12 82066788 82066867 -39190663 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1211 897 178 31 67 chr12 82066867 82067060 -39190470 + B3 SINE B2 28 213 -3 1 1211 1125 95 7 0 chr12 82067800 82067947 -39189583 - B1_Mus1 SINE Alu 0 148 1 1 1211 1187 61 0 7 chr12 82069944 82070092 -39187438 + B1_Mus1 SINE Alu 2 148 0 1 1211 243 0 0 0 chr12 82070103 82070130 -39187400 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1211 1285 83 27 27 chr12 82070473 82070659 -39186871 - B2_Mm2 SINE B2 -7 188 3 1 1211 201 39 0 0 chr12 82070692 82070718 -39186812 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1 1211 1157 84 7 0 chr12 82070719 82070873 -39186657 - B2_Mm1a SINE B2 -38 155 1 1 1211 1875 86 62 15 chr12 82070873 82071144 -39186386 - ORR1A3 LTR MaLR -42 284 1 1 1211 246 230 39 51 chr12 82071203 82071281 -39186249 + RMER20A LTR ERVK 440 516 0 1 1211 8357 126 63 77 chr12 82071396 82072512 -39185018 + RLTR21 LTR ERVK 1 1050 -522 1 1211 519 82 0 0 chr12 82072512 82072585 -39184945 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1 1211 8357 126 63 77 chr12 82072585 82072788 -39184742 + RLTR21 LTR ERVK 1051 1303 -269 1 1211 255 61 0 0 chr12 82072788 82072821 -39184709 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1211 8357 126 63 77 chr12 82072821 82072972 -39184558 + RLTR21 LTR ERVK 1304 1453 -119 1 1211 2654 182 23 35 chr12 82072972 82073540 -39183990 + RLTR31_Mm LTR ERVK 1 561 0 1 1211 8357 126 63 77 chr12 82073540 82073662 -39183868 + RLTR21 LTR ERVK 1454 1572 0 1 1211 307 264 28 0 chr12 82073847 82073919 -39183611 + MLT1A0 LTR MaLR 228 301 -64 1 1211 2323 163 39 12 chr12 82074219 82074629 -39182901 + MTC LTR MaLR 1 421 0 1 1211 270 146 0 35 chr12 82074862 82074919 -39182611 + ORR1D-int LTR MaLR 394 448 -922 1 1211 324 0 0 0 chr12 82074921 82074957 -39182573 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1211 805 181 0 28 chr12 82074982 82075124 -39182406 - B1_Mur1 SINE Alu 0 149 12 1 1211 698 282 0 65 chr12 82075124 82075198 -39182332 - ID_B1 SINE B4 0 224 23 1 1211 24 0 0 0 chr12 82075530 82075554 -39181976 + AT_rich Low_complexity Low_complexity 1 24 0 1 1211 680 145 10 109 chr12 82075818 82075992 -39181538 - RMER1A Other Other 0 1030 876 1 1211 468 51 0 0 chr12 82075992 82076051 -39181479 + (CCA)n Simple_repeat Simple_repeat 1 59 0 1 1211 680 145 10 109 chr12 82076051 82076069 -39181461 - RMER1A Other Other -155 875 858 1 1211 440 148 0 0 chr12 82076069 82076130 -39181400 - RMER1A Other Other -522 508 448 1 1211 1317 186 34 130 chr12 82076131 82076515 -39181015 + RMER17A2 LTR ERVK 1 347 -559 1 1211 796 178 14 14 chr12 82076577 82076725 -39180805 - B1_Mur4 SINE Alu 0 150 3 1 1211 342 244 43 32 chr12 82077546 82077639 -39179891 + ID_B1 SINE B4 131 224 0 1 1211 895 170 0 13 chr12 82077641 82077790 -39179740 + B1_Mm SINE Alu 1 147 0 1 1211 436 270 20 10 chr12 82077882 82077983 -39179547 + B1F SINE Alu 48 149 0 1 1211 28332 104 10 46 chr12 82077988 82081953 -39175577 + L1_Mus3 LINE L1 1559 5376 -507 2 1211 1201 55 0 7 chr12 82081953 82082100 -39175430 - B1_Mus2 SINE Alu 0 147 2 2 1211 28332 65 78 11 chr12 82082100 82083286 -39174244 + L1_Mus3 LINE L1 5377 6635 -3 2 1211 383 344 75 25 chr12 82083834 82084034 -39173496 - MIRb SINE MIR -25 243 34 2 1211 1206 110 55 0 chr12 82084057 82084239 -39173291 - B2_Mm1t SINE B2 -1 192 1 2 1211 920 143 37 6 chr12 82084313 82084475 -39173055 - URR1B DNA MER1_type 0 225 59 2 1211 751 288 58 58 chr12 82085143 82085434 -39172096 + B4A SINE B4 2 292 0 2 1211 306 0 0 0 chr12 82085445 82085479 -39172051 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1211 459 0 0 0 chr12 82085479 82085529 -39172001 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1211 282 271 74 33 chr12 82085863 82085985 -39171545 - L1MC5 LINE L1 -133 7828 7702 2 1211 30 0 0 0 chr12 82086030 82086060 -39171470 + AT_rich Low_complexity Low_complexity 1 30 0 2 1211 486 305 0 8 chr12 82086063 82086195 -39171335 - B3 SINE B2 -57 159 29 2 1211 810 207 0 0 chr12 82086204 82086378 -39171152 + CT-rich Low_complexity Low_complexity 4 177 0 2 1211 518 93 12 0 chr12 82086384 82086470 -39171060 + (TATG)n Simple_repeat Simple_repeat 2 88 0 2 1211 741 93 0 0 chr12 82086490 82086597 -39170933 + (TTTC)n Simple_repeat Simple_repeat 1 107 0 2 1211 219 125 0 0 chr12 82086597 82086637 -39170893 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 2 1211 1052 101 9 9 chr12 82086640 82086873 -39170657 + (TATG)n Simple_repeat Simple_repeat 1 233 0 2 1211 268 237 70 78 chr12 82086873 82087015 -39170515 - Lx8 LINE L1 -3 7470 7330 2 1211 1340 261 126 77 chr12 82087051 82087387 -39170143 - Lx8 LINE L1 -340 7133 6802 2 1211 1096 220 5 0 chr12 82087387 82087601 -39169929 - B3 SINE B2 0 216 2 2 1211 1340 261 126 77 chr12 82087601 82087953 -39169577 - Lx8 LINE L1 -672 6801 6411 2 1211 252 284 25 0 chr12 82088051 82088132 -39169398 - L1MC5 LINE L1 -385 7576 7494 2 1211 305 62 0 20 chr12 82088269 82088318 -39169212 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1211 389 242 232 18 chr12 82088434 82088602 -39168928 - L1MC5 LINE L1 -1089 6872 6669 2 1211 367 224 8 4 chr12 82088603 82088701 -39168829 - B2_Mm2 SINE B2 -92 101 3 2 1211 1235 156 34 0 chr12 82088753 82088958 -39168572 - B3 SINE B2 0 216 5 2 1211 412 346 22 13 chr12 82088966 82089197 -39168333 - L1MC4 LINE L1 -4402 1813 1581 2 1211 315 0 0 0 chr12 82089306 82089341 -39168189 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1211 1451 251 84 18 chr12 82089341 82089723 -39167807 + MTD LTR MaLR 13 419 0 2 1211 333 0 0 0 chr12 82089745 82089782 -39167748 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1211 258 224 15 121 chr12 82089786 82089852 -39167678 - ID4_ SINE ID -13 70 12 2 1211 253 302 115 25 chr12 82089870 82089992 -39167538 - ID_B1 SINE B4 -1 223 91 2 1211 619 222 107 17 chr12 82090031 82090265 -39167265 - L1MC3 LINE L1 -697 7088 6834 2 1211 257 259 99 27 chr12 82091545 82091656 -39165874 - MIR SINE MIR -135 127 9 2 1211 3031 87 76 7 chr12 82092338 82092682 -39164848 + RMER17B LTR ERVK 1 353 -605 2 1211 384 22 0 0 chr12 82092682 82092727 -39164803 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1211 3031 87 76 7 chr12 82092727 82092844 -39164686 + RMER17B LTR ERVK 354 492 -466 2 1211 1046 154 10 21 chr12 82092841 82093033 -39164497 + RMER17B LTR ERVK 769 958 0 2 1211 606 165 180 8 chr12 82093629 82093757 -39163773 - B3 SINE B2 -4 212 63 2 1211 601 179 11 23 chr12 82094602 82094717 -39162813 + B1_Mur1 SINE Alu 1 149 0 2 1211 225 0 0 0 chr12 82095156 82095181 -39162349 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1211 620 249 29 16 chr12 82095182 82095350 -39162180 - B3A SINE B2 -28 188 26 2 1211 1305 83 0 0 chr12 82095357 82095537 -39161993 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1211 201 152 0 0 chr12 82095538 82095571 -39161959 + CT-rich Low_complexity Low_complexity 4 36 0 2 1211 356 237 89 30 chr12 82095575 82095710 -39161820 - L1MC3 LINE L1 -15 7770 7628 2 1211 3713 131 2 2 chr12 82095712 82096234 -39161296 + Lx5 LINE L1 6262 6783 -267 2 1211 492 322 89 62 chr12 82096234 82096605 -39160925 - L1MC3 LINE L1 -354 7431 7051 2 1211 448 258 121 63 chr12 82096636 82096650 -39160880 - B4 SINE B4 -49 243 229 2 1211 1134 209 29 0 chr12 82096650 82096860 -39160670 - B3 SINE B2 0 216 1 2 1211 1006 197 77 2 chr12 82096860 82097068 -39160462 - ID_B1 SINE B4 -64 228 8 2 1211 251 257 139 0 chr12 82097077 82097178 -39160352 - L1MC3 LINE L1 -802 6983 6869 2 1211 491 41 61 10 chr12 82097325 82097383 -39160147 + (TTC)n Simple_repeat Simple_repeat 1 57 0 2 1211 1176 84 0 16 chr12 82097383 82097565 -39159965 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 2 1211 491 41 61 10 chr12 82097565 82097604 -39159926 + (TTC)n Simple_repeat Simple_repeat 1 45 0 2 1211 473 274 58 22 chr12 82097606 82097638 -39159892 - B4 SINE B4 -63 229 87 2 1211 699 160 0 0 chr12 82097638 82097744 -39159786 - B1_Mus1 SINE Alu -41 107 2 2 1211 201 211 141 0 chr12 82097905 82097976 -39159554 + MIRc SINE MIR 42 122 -146 2 1211 612 239 12 61 chr12 82097996 82098161 -39159369 + RSINE1 SINE B4 3 159 -6 2 1211 196 375 0 10 chr12 82098576 82098673 -39158857 - MIR SINE MIR -117 145 50 2 1211 219 103 0 0 chr12 82098973 82099012 -39158518 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1211 194 129 0 0 chr12 82099521 82099552 -39157978 - MIRc SINE MIR -122 146 116 2 1211 600 157 0 29 chr12 82100367 82100472 -39157058 - B1_Mur2 SINE Alu -1 148 47 2 1211 236 268 194 10 chr12 82100555 82100653 -39156877 - MIRb SINE MIR -117 151 36 2 1211 374 248 53 0 chr12 82100660 82100773 -39156757 - MER20 DNA MER1_type -15 204 86 2 1211 1996 136 140 14 chr12 82101846 82102196 -39155334 - ORR1B1 LTR MaLR 0 394 1 2 1211 360 0 0 0 chr12 82102217 82102257 -39155273 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1211 291 114 0 0 chr12 82102377 82102421 -39155109 + (TCC)n Simple_repeat Simple_repeat 2 45 0 2 1211 719 215 26 46 chr12 82102432 82102583 -39154947 - B1_Mur2 SINE Alu 0 149 2 2 1211 277 239 31 148 chr12 82102476 82102604 -39154926 - MT2B LTR ERVL -337 264 152 2 1211 426 157 7 212 chr12 82102702 82102794 -39154736 - URR1B DNA MER1_type -1 224 156 2 1211 768 140 188 6 chr12 82102794 82102959 -39154571 - B2_Mm2 SINE B2 0 195 1 2 1211 426 157 7 212 chr12 82102959 82103003 -39154527 - URR1B DNA MER1_type -70 155 116 2 1211 889 144 20 20 chr12 82103169 82103318 -39154212 - B1_Mur4 SINE Alu -1 149 1 2 1211 305 24 24 0 chr12 82103330 82103372 -39154158 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1211 268 237 12 84 chr12 82103398 82103481 -39154049 - PB1D10 SINE Alu -16 101 25 2 1211 1624 236 65 15 chr12 82104944 82105356 -39152174 + Lx7 LINE L1 6794 7226 -470 2 1211 441 0 0 0 chr12 82105356 82105405 -39152125 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 2 1211 848 321 120 40 chr12 82105405 82105616 -39151914 + Lx6 LINE L1 7220 7457 -3 2 1211 307 319 95 92 chr12 82105694 82105967 -39151563 + L2a LINE L2 2990 3263 -163 2 1211 1830 210 46 16 chr12 82105988 82106391 -39151139 + MTD LTR MaLR 1 405 -14 2 1211 403 333 42 0 chr12 82106405 82106525 -39151005 + L2a LINE L2 3297 3421 -5 2 1211 220 218 18 35 chr12 82106675 82106732 -39150798 + MIR SINE MIR 13 68 -194 2 1211 288 310 199 35 chr12 82108035 82108436 -39149094 + Charlie7 DNA MER1_type 114 580 -2032 2 1211 377 246 0 7 chr12 82108439 82108574 -39148956 + (TG)n Simple_repeat Simple_repeat 1 134 0 2 1211 269 197 0 13 chr12 82108655 82108732 -39148798 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1211 262 315 38 45 chr12 82108775 82108908 -39148622 + Charlie7 DNA MER1_type 583 714 -1898 2 1211 632 234 189 16 chr12 82108921 82109112 -39148418 - ID_B1 SINE B4 0 224 1 2 1211 202 326 7 41 chr12 82109714 82109861 -39147669 + GA-rich Low_complexity Low_complexity 2 143 0 2 1211 189 74 0 0 chr12 82111210 82111237 -39146293 + (CGGGG)n Simple_repeat Simple_repeat 3 29 0 2 1211 942 169 0 0 chr12 82111497 82111780 -39145750 + CT-rich Low_complexity Low_complexity 1 283 0 2 1211 942 99 7 47 chr12 82111786 82111935 -39145595 - B1_Mur4 SINE Alu -7 143 1 2 1211 435 261 84 74 chr12 82112203 82112393 -39145137 + MER53 DNA hAT 1 192 -1 2 1211 324 64 0 0 chr12 82112494 82112541 -39144989 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1211 242 228 51 0 chr12 82112628 82112707 -39144823 + (CAGAGA)n Simple_repeat Simple_repeat 3 85 0 2 1211 256 241 66 107 chr12 82112786 82112907 -39144623 - MTEa LTR MaLR -243 136 21 2 1211 474 235 179 5 chr12 82113303 82113487 -39144043 - L1MB3 LINE L1 -2 6181 5966 2 1211 864 258 32 50 chr12 82113591 82113873 -39143657 - L1MB3 LINE L1 -407 5773 5497 2 1211 238 26 0 49 chr12 82113914 82113955 -39143575 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1211 1175 65 0 0 chr12 82113955 82114094 -39143436 - B1_Mus1 SINE Alu -8 140 2 2 1211 377 331 47 7 chr12 82114094 82114243 -39143287 - MIR SINE MIR -98 164 10 2 1211 790 256 69 20 chr12 82114976 82115179 -39142351 - B3 SINE B2 -2 214 2 2 1211 222 250 116 71 chr12 82115355 82115472 -39142058 + MIR SINE MIR 92 216 -52 2 1211 456 19 0 0 chr12 82116074 82116127 -39141403 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1211 393 273 0 22 chr12 82116127 82116217 -39141313 - RSINE1 SINE B4 -75 90 3 2 1211 939 262 48 0 chr12 82116340 82116550 -39140980 - ID_B1 SINE B4 -4 220 1 2 1211 435 274 62 56 chr12 82116571 82116604 -39140926 - B2_Mm1a SINE B2 -11 182 151 2 1211 318 67 0 0 chr12 82116604 82116649 -39140881 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1211 760 165 26 4 chr12 82116649 82116793 -39140737 - B3A SINE B2 -43 150 4 2 1211 388 223 48 19 chr12 82116816 82116921 -39140609 + Looper DNA PiggyBac 84 191 -1367 2 1211 782 259 64 18 chr12 82116924 82117236 -39140294 + MTE2b LTR MaLR 3 372 -7 2 1211 988 269 141 20 chr12 82117270 82117766 -39139764 + Looper DNA PiggyBac 223 778 -780 2 1211 888 145 8 0 chr12 82117772 82117903 -39139627 + B1_Mur3 SINE Alu 9 140 -9 2 1211 683 292 98 15 chr12 82117917 82118254 -39139276 + Looper DNA PiggyBac 761 1125 -433 2 1211 1122 179 0 25 chr12 82118288 82118488 -39139042 + B3 SINE B2 1 195 -21 2 1211 451 319 28 68 chr12 82118492 82118765 -39138765 + B4A SINE B4 3 279 -13 2 1211 4044 222 120 16 chr12 82119000 82119932 -39137598 - RMER1A Other Other -1 1029 1 2 1211 689 247 11 39 chr12 82119932 82120113 -39137417 - RMER1A Other Other -774 256 81 2 1211 2757 102 4 81 chr12 82120153 82120632 -39136898 + RLTR11B LTR ERVK 1 442 -11 3 1211 1086 183 228 0 chr12 82120664 82120867 -39136663 - RMER1B Other Other -721 345 105 3 1211 321 26 0 0 chr12 82120867 82120905 -39136625 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1211 1086 183 228 0 chr12 82120905 82120947 -39136583 - RMER1B Other Other -962 104 45 3 1211 320 313 194 31 chr12 82121179 82121442 -39136088 + MLT1E1A LTR MaLR 92 422 -147 3 1211 366 287 120 0 chr12 82121447 82121555 -39135975 - MER45A DNA Tip100 -5 173 53 3 1211 386 329 13 27 chr12 82121584 82121734 -39135796 + MLT1E1A LTR MaLR 529 676 -4 3 1211 2353 139 3 6 chr12 82121739 82122087 -39135443 + ORR1B1 LTR MaLR 1 347 -47 3 1211 646 90 10 20 chr12 82122088 82122182 -39135348 + B1_Mus2 SINE Alu 47 140 -7 3 1211 243 0 0 0 chr12 82122182 82122209 -39135321 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 1211 416 107 0 0 chr12 82122215 82122271 -39135259 + ORR1A4 LTR MaLR 274 329 0 3 1211 322 283 162 0 chr12 82122272 82122371 -39135159 + Looper DNA PiggyBac 1433 1547 -11 2 1211 282 381 69 78 chr12 82122430 82122763 -39134767 + L2b LINE L2 3023 3352 -23 3 1211 1650 165 96 45 chr12 82122838 82123194 -39134336 - ORR1D1 LTR MaLR 0 374 1 3 1211 2132 168 41 39 chr12 82123194 82123608 -39133922 - ORR1D1-int LTR MaLR 0 1370 956 3 1211 527 281 115 53 chr12 82123616 82123920 -39133610 - MLT1A0 LTR MaLR -32 333 11 3 1211 1133 69 14 0 chr12 82124139 82124284 -39133246 - B1_Mus1 SINE Alu 0 148 2 3 1211 318 320 48 0 chr12 82124284 82124379 -39133151 + MLT1J LTR MaLR 236 335 -177 3 1211 267 104 0 0 chr12 82125129 82125177 -39132353 + (ATTG)n Simple_repeat Simple_repeat 1 48 0 3 1211 287 293 121 98 chr12 82126058 82126232 -39131298 - MIR SINE MIR -42 220 43 3 1211 379 0 19 19 chr12 82127588 82127640 -39129890 + (TGGGGG)n Simple_repeat Simple_repeat 2 53 0 3 1211 252 0 0 0 chr12 82128490 82128518 -39129012 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1211 206 118 0 0 chr12 82129950 82129984 -39127546 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 3 1211 285 207 0 0 chr12 82130040 82130127 -39127403 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 1211 639 274 71 14 chr12 82130127 82130313 -39127217 - B3A SINE B2 -18 177 3 3 1211 539 39 26 0 chr12 82130499 82130576 -39126954 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 3 1211 334 348 10 41 chr12 82131275 82131423 -39126107 + L2b LINE L2 3270 3421 -5 3 1211 925 139 28 0 chr12 82131523 82131667 -39125863 + B1_Mur4 SINE Alu 2 149 -1 3 1211 687 169 85 0 chr12 82131780 82131898 -39125632 - B1_Mur1 SINE Alu -19 130 3 3 1211 304 378 82 35 chr12 82132608 82132863 -39124667 + L1M5 LINE L1 5576 5842 -398 3 1211 585 246 18 0 chr12 82132869 82132983 -39124547 + B4A SINE B4 8 123 -169 3 1211 366 326 57 18 chr12 82132995 82133200 -39124330 + B4 SINE B4 82 274 -18 3 1211 2632 167 50 47 chr12 82133200 82133663 -39123867 + RLTR20B2 LTR ERVK 1 464 -96 3 1211 366 23 0 0 chr12 82133663 82133706 -39123824 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1211 2632 167 50 47 chr12 82133706 82133800 -39123730 + RLTR20B2 LTR ERVK 465 560 0 3 1211 283 277 119 0 chr12 82134124 82134225 -39123305 + L1ME5 LINE L1 6069 6181 -13 3 1211 228 67 0 0 chr12 82135344 82135374 -39122156 + (TGG)n Simple_repeat Simple_repeat 3 32 0 3 1211 716 137 25 8 chr12 82135380 82135498 -39122032 + B1_Mus2 SINE Alu 15 134 -13 3 1211 449 138 0 12 chr12 82135509 82135590 -39121940 + (GGGAA)n Simple_repeat Simple_repeat 1 80 0 3 1211 375 23 0 0 chr12 82135663 82135707 -39121823 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1211 493 269 201 30 chr12 82135718 82135917 -39121613 - B4 SINE B4 -19 273 41 3 1211 263 259 252 27 chr12 82136133 82136244 -39121286 + MER3 DNA MER1_type 3 138 -71 3 1211 401 331 50 12 chr12 82136472 82136781 -39120749 - Lx8 LINE L1 -178 7295 6964 3 1211 405 266 92 23 chr12 82136786 82136917 -39120613 - ID_B1 SINE B4 -3 221 82 3 1211 511 277 94 49 chr12 82136919 82137143 -39120387 - MLT1D LTR MaLR -167 338 105 3 1211 225 0 0 0 chr12 82137143 82137168 -39120362 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1211 3034 75 10 12 chr12 82137224 82137628 -39119902 + MTB_Mm LTR MaLR 2 404 -3 3 1211 181 244 22 22 chr12 82137784 82137830 -39119700 + MIRm SINE MIR 230 275 -1 3 1211 688 307 94 46 chr12 82138515 82139099 -39118431 + L1ME3B LINE L1 5538 6149 -91 3 1211 231 279 16 0 chr12 82139221 82139282 -39118248 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1211 329 235 297 75 chr12 82139288 82139527 -39118003 - B4A SINE B4 0 292 1 3 1211 273 238 136 73 chr12 82139622 82139799 -39117731 - L1MC5 LINE L1 -47 7914 7727 3 1211 241 313 83 50 chr12 82139805 82139926 -39117604 + Tigger5 DNA MER2_type 2268 2392 -14 3 1211 366 292 63 56 chr12 82139965 82140233 -39117297 - L1MC5 LINE L1 -236 7725 7456 3 1211 494 199 94 14 chr12 82140303 82140441 -39117089 - B1F2 SINE Alu 0 149 1 3 1211 397 214 89 5 chr12 82141041 82141150 -39116380 + MLT1B LTR MaLR 1 116 -351 3 1211 25 0 0 0 chr12 82141211 82141236 -39116294 + AT_rich Low_complexity Low_complexity 1 25 0 3 1211 411 267 0 0 chr12 82141306 82141396 -39116134 + MLT1B LTR MaLR 83 172 -218 3 1211 235 301 333 27 chr12 82141401 82141551 -39115979 + ID_B1 SINE B4 3 198 -26 3 1211 274 340 0 50 chr12 82141460 82141559 -39115971 + PB1D7 SINE Alu 6 99 -21 3 1211 560 186 8 0 chr12 82141559 82141677 -39115853 + GA-rich Low_complexity Low_complexity 1 119 0 3 1211 603 287 83 32 chr12 82141677 82141893 -39115637 + MLT1B LTR MaLR 164 390 0 3 1211 223 354 77 35 chr12 82143386 82143556 -39113974 + MIRb SINE MIR 18 194 -74 3 1211 198 0 0 0 chr12 82143626 82143648 -39113882 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1211 1039 65 7 0 chr12 82143648 82143787 -39113743 - B1_Mus2 SINE Alu 0 147 8 3 1211 504 239 58 78 chr12 82143653 82143807 -39113723 - B4 SINE B4 -71 221 71 3 1211 271 226 92 35 chr12 82143688 82143830 -39113700 - ORR1B1-int LTR MaLR -755 754 605 3 1211 266 106 0 21 chr12 82143850 82143898 -39113632 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1211 387 257 204 13 chr12 82143898 82144123 -39113407 - B4A SINE B4 -23 269 2 3 1211 947 276 118 61 chr12 82144190 82144470 -39113060 - L1MCa LINE L1 -6002 506 215 3 1211 516 32 0 0 chr12 82144470 82144532 -39112998 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1211 947 276 118 61 chr12 82144532 82144710 -39112820 - L1MCa LINE L1 -6294 214 23 3 1211 353 229 0 0 chr12 82145144 82145214 -39112316 - MIR SINE MIR -87 175 106 3 1211 750 226 0 20 chr12 82145755 82145904 -39111626 + B1_Mus2 SINE Alu 2 147 0 3 1211 396 198 47 47 chr12 82146226 82146332 -39111198 + Ricksha_c DNA MuDR 26 131 -1917 3 1211 216 136 0 0 chr12 82146391 82146410 -39111120 + (GA)n Simple_repeat Simple_repeat 1 19 0 3 1211 410 0 20 0 chr12 82146410 82146460 -39111070 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 3 1211 216 136 0 0 chr12 82146460 82146484 -39111046 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1211 810 0 0 0 chr12 82146486 82146576 -39110954 + (GGAGA)n Simple_repeat Simple_repeat 2 91 0 3 1211 260 228 0 0 chr12 82146677 82146734 -39110796 + Ricksha_c DNA MuDR 414 470 -1578 3 1211 257 200 138 0 chr12 82146746 82146811 -39110719 + Ricksha_c DNA MuDR 510 583 -1465 3 1211 438 279 70 14 chr12 82148472 82148614 -39108916 + MLT1K LTR MaLR 331 480 -115 3 1211 242 324 220 48 chr12 82148743 82149139 -39108391 + MLT1H LTR MaLR 86 549 0 3 1211 432 0 0 0 chr12 82149265 82149313 -39108217 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1211 816 107 0 0 chr12 82149902 82150023 -39107507 + (TCC)n Simple_repeat Simple_repeat 3 123 0 3 1211 736 256 12 12 chr12 82150024 82150186 -39107344 - RSINE1 SINE B4 0 165 4 3 1211 504 294 67 24 chr12 82151011 82151232 -39106298 + MLT1G3 LTR MaLR 347 594 -1 3 1211 644 225 68 27 chr12 82151777 82151923 -39105607 - RSINE1 SINE B4 -11 154 3 3 1211 1219 287 55 9 chr12 82152340 82152684 -39104846 - MLT1A0 LTR MaLR 0 365 6 3 1211 960 244 53 5 chr12 82152746 82152952 -39104578 - B3 SINE B2 0 216 1 3 1211 207 0 0 0 chr12 82153428 82153451 -39104079 + (GGA)n Simple_repeat Simple_repeat 1 23 0 3 1211 536 212 0 38 chr12 82153598 82153784 -39103746 + (TATG)n Simple_repeat Simple_repeat 2 180 0 3 1211 650 217 0 11 chr12 82153837 82154019 -39103511 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1211 278 227 0 13 chr12 82154131 82154207 -39103323 + CT-rich Low_complexity Low_complexity 3 77 0 3 1211 216 283 57 0 chr12 82154228 82154281 -39103249 - ID4 SINE ID -2 81 26 3 1211 237 256 32 75 chr12 82154413 82154506 -39103024 + LTR53 LTR ERVL 363 451 -68 3 1211 822 94 0 0 chr12 82154823 82154940 -39102590 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 3 1211 291 54 0 0 chr12 82154942 82154979 -39102551 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 3 1211 184 295 2 52 chr12 82155560 82155622 -39101908 - MIR SINE MIR -189 79 19 3 1211 243 0 0 0 chr12 82155713 82155740 -39101790 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1211 569 154 9 0 chr12 82155892 82156002 -39101528 + CT-rich Low_complexity Low_complexity 2 112 0 3 1211 305 261 0 51 chr12 82156780 82156873 -39100657 - ID4 SINE ID -56 96 8 3 1211 325 295 67 27 chr12 82156970 82157120 -39100410 - L1MD3 LINE L1 -1996 5999 5844 3 1211 349 329 7 14 chr12 82157229 82157377 -39100153 - L1ME1 LINE L1 -352 5827 5681 3 1211 417 20 0 0 chr12 82157387 82157437 -39100093 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1211 240 35 0 0 chr12 82157444 82157473 -39100057 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1211 796 231 16 5 chr12 82157474 82157661 -39099869 - Lx4B LINE L1 -262 6796 6608 3 1211 706 282 99 0 chr12 82157689 82157912 -39099618 - B4A SINE B4 -2 290 46 3 1211 953 243 108 5 chr12 82157917 82158140 -39099390 - B4A SINE B4 -46 246 1 3 1211 494 262 20 20 chr12 82158146 82158294 -39099236 - L1ME1 LINE L1 -493 5686 5539 3 1211 351 0 0 0 chr12 82158301 82158340 -39099190 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1211 252 0 0 0 chr12 82158340 82158367 -39099163 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1211 22 0 0 0 chr12 82158450 82158472 -39099058 + AT_rich Low_complexity Low_complexity 1 22 0 3 1211 465 218 0 31 chr12 82158607 82158734 -39098796 - MamRep4096 DNA hAT? -254 172 50 3 1211 364 275 103 21 chr12 82158734 82158879 -39098651 - MLT1J LTR MaLR 0 512 356 4 1211 450 0 0 0 chr12 82158881 82158931 -39098599 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1211 254 228 18 0 chr12 82159019 82159076 -39098454 + CT-rich Low_complexity Low_complexity 2 59 0 4 1211 640 278 53 0 chr12 82159106 82159257 -39098273 - B4 SINE B4 -42 250 92 4 1211 470 275 54 21 chr12 82159908 82160094 -39097436 - MER53 DNA hAT 0 193 2 4 1211 309 175 0 66 chr12 82160494 82160555 -39096975 + MER5A DNA MER1_type 1 57 -132 4 1211 1208 142 102 0 chr12 82160667 82160872 -39096658 - URR1A DNA MER1_type 0 226 1 4 1211 409 298 22 45 chr12 82160872 82161051 -39096479 - MER58A DNA MER1_type -20 204 30 4 1211 234 128 0 0 chr12 82161214 82161253 -39096277 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1211 244 277 51 51 chr12 82161260 82161416 -39096114 + RLTR40 LTR ERVK 570 725 -92 4 1211 22 70 0 0 chr12 82161585 82161628 -39095902 + AT_rich Low_complexity Low_complexity 1 43 0 4 1211 3099 230 199 30 chr12 82161644 82162184 -39095346 - Lx8 LINE L1 -18 7455 6852 4 1211 449 0 36 0 chr12 82162184 82162240 -39095290 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 4 1211 3099 230 199 30 chr12 82162240 82162281 -39095249 - Lx8 LINE L1 -622 6851 6772 4 1211 894 35 0 0 chr12 82162281 82162395 -39095135 + (CA)n Simple_repeat Simple_repeat 2 115 0 4 1211 3099 230 199 30 chr12 82162395 82162796 -39094734 - Lx8 LINE L1 -702 6771 6307 4 1211 293 339 214 35 chr12 82162881 82163590 -39093940 + L2 LINE L2 1374 2209 -1210 4 1211 1059 136 115 5 chr12 82163731 82163931 -39093599 - URR1A DNA MER1_type 0 226 5 4 1211 309 239 77 68 chr12 82164466 82164583 -39092947 - LTR48 LTR ERV1 -511 276 159 4 1211 1147 278 106 120 chr12 82164863 82165275 -39092255 - MER31-int LTR ERV1 -218 4718 4311 4 1211 1011 106 0 0 chr12 82165275 82165435 -39092095 + (GA)n Simple_repeat Simple_repeat 1 160 0 4 1211 1147 278 106 120 chr12 82165435 82165493 -39092037 - MER31-int LTR ERV1 -626 4310 4242 4 1211 243 0 0 0 chr12 82165493 82165520 -39092010 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 1211 1147 278 106 120 chr12 82165520 82165735 -39091795 - MER31-int LTR ERV1 -695 4241 4106 4 1211 605 274 87 53 chr12 82165735 82166001 -39091529 - B4A SINE B4 -16 276 2 4 1211 1147 278 106 120 chr12 82166001 82166501 -39091029 - MER31-int LTR ERV1 -831 4105 3550 4 1211 511 297 94 46 chr12 82166541 82166848 -39090682 - MER31-int LTR ERV1 -1338 3598 3277 4 1211 283 257 72 53 chr12 82167298 82167450 -39090080 - MER31-int LTR ERV1 -2333 3023 2869 4 1211 350 196 11 0 chr12 82167450 82167542 -39089988 + (CCA)n Simple_repeat Simple_repeat 1 93 0 4 1211 699 206 14 22 chr12 82167542 82167681 -39089849 - B1F SINE Alu -7 142 5 4 1211 839 245 80 57 chr12 82167929 82168280 -39089250 - MER31-int LTR ERV1 -2964 2392 2034 4 1211 295 222 44 11 chr12 82168385 82168476 -39089054 - MER31-int LTR ERV1 -3585 1351 1258 4 1211 342 187 119 24 chr12 82168510 82168636 -39088894 - MER31-int LTR ERV1 -3778 1158 1021 4 1211 803 78 9 0 chr12 82168743 82168859 -39088671 + (TC)n Simple_repeat Simple_repeat 1 117 0 4 1211 1236 34 7 0 chr12 82168960 82169106 -39088424 - B1_Mus1 SINE Alu -1 147 1 4 1211 317 322 0 0 chr12 82169455 82169545 -39087985 - MER34-int LTR ERV1 -5866 2341 2252 4 1211 293 248 35 52 chr12 82169665 82169708 -39087822 - MER31-int LTR ERV1 -4697 659 618 4 1211 306 0 0 0 chr12 82169708 82169742 -39087788 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1211 293 248 35 52 chr12 82169742 82169813 -39087717 - MER31-int LTR ERV1 -4739 617 547 4 1211 333 264 83 35 chr12 82170214 82170359 -39087171 - MER34-int LTR ERV1 -6860 1347 1196 4 1211 847 309 127 46 chr12 82170368 82170910 -39086620 - MER34-int LTR ERV1 -7132 1075 490 4 1211 1687 182 65 17 chr12 82170944 82171296 -39086234 - ORR1D1 LTR MaLR -5 369 1 4 1211 332 274 109 20 chr12 82171430 82171631 -39085899 - MER34-int LTR ERV1 -7895 312 94 4 1211 963 201 4 79 chr12 82171979 82172206 -39085324 - B3 SINE B2 -5 211 2 4 1211 266 288 0 0 chr12 82172210 82172269 -39085261 - B4A SINE B4 -232 60 2 4 1211 477 0 0 0 chr12 82173251 82173304 -39084226 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1211 273 315 17 43 chr12 82173482 82173598 -39083932 + MIR SINE MIR 22 134 -128 4 1211 929 290 3 64 chr12 82173626 82173924 -39083606 + B4A SINE B4 2 281 -11 4 1211 2879 135 0 2 chr12 82174310 82174732 -39082798 + MTC LTR MaLR 1 421 0 4 1211 374 232 12 12 chr12 82176007 82176090 -39081440 - PB1D10 SINE Alu -7 110 28 4 1211 528 16 0 0 chr12 82176418 82176479 -39081051 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1211 201 284 0 0 chr12 82176483 82176550 -39080980 + GA-rich Low_complexity Low_complexity 2 68 0 4 1211 339 226 83 55 chr12 82177100 82177245 -39080285 - LTR16A1 LTR ERVL -25 431 283 4 1211 301 297 126 72 chr12 82177764 82177971 -39079559 + ORR1E LTR MaLR 77 294 -65 4 1211 227 182 18 35 chr12 82178157 82178214 -39079316 + ORR1E LTR MaLR 322 377 -2 4 1211 541 261 179 4 chr12 82178267 82178502 -39079028 - L1MA8 LINE L1 -2 6289 6014 4 1211 343 255 99 94 chr12 82179921 82180133 -39077397 - Lx8 LINE L1 0 7473 7261 4 1211 789 257 44 31 chr12 82180110 82180339 -39077191 - Lx8 LINE L1 -701 6772 6541 4 1211 663 13 0 0 chr12 82180531 82180607 -39076923 + (TTCC)n Simple_repeat Simple_repeat 4 79 0 4 1211 300 91 0 0 chr12 82180607 82180651 -39076879 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1211 1125 89 0 20 chr12 82180660 82180809 -39076721 - B1_Mm SINE Alu 0 147 2 4 1211 236 295 0 16 chr12 82180820 82180882 -39076648 + Charlie12 DNA MER1_type 7 67 -2806 4 1212 550 307 49 16 chr12 82182305 82182544 -39074986 - MIRb SINE MIR -3 265 2 4 1212 973 101 7 7 chr12 82182937 82183076 -39074454 - B1_Mur4 SINE Alu -7 143 5 4 1212 1056 219 95 120 chr12 82183128 82183643 -39073887 - MT2A LTR ERVL 0 533 32 4 1212 843 61 0 0 chr12 82184636 82184750 -39072780 + (TCCC)n Simple_repeat Simple_repeat 4 117 0 4 1212 294 256 0 12 chr12 82185140 82185223 -39072307 + L3b LINE CR1 220 301 -181 4 1212 531 293 73 40 chr12 82186317 82186591 -39070939 + B4A SINE B4 3 285 -7 4 1212 221 326 135 0 chr12 82186821 82186910 -39070620 - PB1 SINE Alu -26 101 1 4 1212 234 214 0 54 chr12 82188110 82188184 -39069346 - ID4 SINE ID -10 73 4 4 1212 309 302 17 25 chr12 82188199 82188216 -39069314 - B1_Mus1 SINE Alu -19 129 12 4 1212 478 245 0 0 chr12 82188216 82188318 -39069212 - ID_B1 SINE B4 -31 193 92 4 1212 201 236 242 22 chr12 82188530 82188621 -39068909 + MIRb SINE MIR 40 150 -118 4 1212 828 207 15 34 chr12 82188643 82188854 -39068676 + B3 SINE B2 1 198 0 4 1212 227 293 0 0 chr12 82188879 82188954 -39068576 + MIRb SINE MIR 178 252 -16 4 1212 770 289 5 0 chr12 82189262 82189449 -39068081 + B4A SINE B4 1 188 -104 4 1212 315 0 0 0 chr12 82189472 82189507 -39068023 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1212 197 108 0 26 chr12 82192146 82192184 -39065346 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 4 1212 360 0 0 0 chr12 82192313 82192353 -39065177 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1212 273 79 0 0 chr12 82192392 82192430 -39065100 - B1_Mus1 SINE Alu -109 39 2 4 1212 198 0 0 0 chr12 82195342 82195364 -39062166 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1212 588 204 17 62 chr12 82195421 82195451 -39062079 - L1ME1 LINE L1 -1972 6023 5999 4 1212 957 101 0 0 chr12 82195451 82195590 -39061940 + (GA)n Simple_repeat Simple_repeat 2 140 0 4 1212 641 190 9 8 chr12 82195590 82195737 -39061793 - L1ME1 LINE L1 -1997 5998 5854 4 1212 339 306 32 16 chr12 82196610 82196736 -39060794 - Lx8 LINE L1 -121 7352 7225 4 1212 315 0 0 0 chr12 82196756 82196791 -39060739 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1212 1911 316 64 48 chr12 82196862 82197797 -39059733 - Lx8 LINE L1 -322 7151 6202 4 1212 288 309 0 0 chr12 82197835 82197903 -39059627 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1212 446 154 23 64 chr12 82199195 82199368 -39058162 + CT-rich Low_complexity Low_complexity 2 167 0 4 1212 653 172 205 21 chr12 82199384 82199514 -39058016 - ORR1D1 LTR MaLR -58 316 183 4 1212 692 114 7 0 chr12 82199514 82199654 -39057876 + (CA)n Simple_repeat Simple_repeat 2 142 0 4 1212 504 0 0 0 chr12 82199654 82199709 -39057821 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 1212 653 172 205 21 chr12 82199709 82199767 -39057763 - ORR1D1 LTR MaLR -192 182 93 4 1212 486 0 0 0 chr12 82200046 82200100 -39057430 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1212 532 217 19 0 chr12 82200110 82200216 -39057314 - RSINE1 SINE B4 -28 137 30 4 1212 588 301 66 17 chr12 82200331 82200575 -39056955 + MLT1H2 LTR MaLR 286 555 0 4 1212 677 253 27 0 chr12 82200839 82200989 -39056541 + B3A SINE B2 1 154 -44 4 1212 351 0 0 0 chr12 82201013 82201052 -39056478 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1212 294 253 12 12 chr12 82202092 82202172 -39055358 + PB1D10 SINE Alu 37 116 -1 4 1212 282 29 0 0 chr12 82202673 82202708 -39054822 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1212 258 105 0 0 chr12 82203318 82203356 -39054174 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 1212 307 113 0 31 chr12 82204497 82204561 -39052969 + (GAAAA)n Simple_repeat Simple_repeat 3 64 0 4 1212 375 291 106 50 chr12 82206042 82206241 -39051289 + MER102a DNA MER1_type 2 211 -119 4 1212 259 245 100 73 chr12 82206423 82206533 -39050997 - PB1D10 SINE Alu 0 117 5 4 1212 951 75 0 82 chr12 82207881 82208005 -39049525 - B1_Mus1 SINE Alu 0 148 37 4 1212 3626 52 7 0 chr12 82208005 82208449 -39049081 - L1Md_F3 LINE L1 -14 6570 6124 4 1212 951 75 0 82 chr12 82208449 82208483 -39049047 - B1_Mus1 SINE Alu -112 36 3 4 1212 181 150 200 0 chr12 82208993 82209033 -39048497 + MIRm SINE MIR 100 147 -129 4 1212 204 339 0 0 chr12 82209165 82209227 -39048303 + MIRb SINE MIR 161 222 -46 4 1212 195 42 0 0 chr12 82210351 82210375 -39047155 + (CGGG)n Simple_repeat Simple_repeat 2 25 0 4 1212 212 281 16 0 chr12 82210523 82210644 -39046886 + (TATG)n Simple_repeat Simple_repeat 1 123 0 4 1212 1224 223 32 14 chr12 82210654 82210931 -39046599 - B4 SINE B4 0 292 11 4 1212 431 324 0 31 chr12 82211308 82211574 -39045956 + (TATG)n Simple_repeat Simple_repeat 1 257 0 4 1212 527 246 16 54 chr12 82211930 82212115 -39045415 - L1MC5 LINE L1 -44 7917 7740 4 1212 284 264 28 0 chr12 82212546 82212618 -39044912 + ID4_ SINE ID 7 80 -3 4 1212 1011 239 12 16 chr12 82212704 82212946 -39044584 + B4 SINE B4 1 241 -51 4 1212 2102 149 80 13 chr12 82212941 82213328 -39044202 - MTC LTR MaLR -8 413 1 4 1212 347 307 50 38 chr12 82213453 82213612 -39043918 + L1M5 LINE L1 5506 5666 -458 4 1212 552 68 0 0 chr12 82214071 82214144 -39043386 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 4 1212 1394 103 0 5 chr12 82214144 82214339 -39043191 - B2_Mm2 SINE B2 0 195 2 4 1212 872 119 0 38 chr12 82214581 82214765 -39042765 + CT-rich Low_complexity Low_complexity 4 180 0 4 1212 3253 249 40 39 chr12 82214779 82215270 -39042260 - Lx8 LINE L1 -202 7271 6781 5 1212 1114 41 13 7 chr12 82215270 82215419 -39042111 - L1Md_F3 LINE L1 0 6584 6435 5 1212 3253 249 40 39 chr12 82215419 82215784 -39041746 - Lx8 LINE L1 -693 6780 6414 5 1212 1275 304 54 98 chr12 82215990 82216379 -39041151 - Lx8 LINE L1 -1075 6398 6013 5 1212 698 266 39 0 chr12 82216379 82216582 -39040948 - B3 SINE B2 -5 211 1 5 1212 6163 280 81 35 chr12 82216582 82217942 -39039588 - Lx8 LINE L1 -1461 6012 4621 5 1212 921 138 0 0 chr12 82217942 82218101 -39039429 + (TTAGGC)n Simple_repeat Simple_repeat 3 161 0 5 1212 6163 277 84 28 chr12 82218101 82219553 -39037977 - Lx8 LINE L1 -1260 4620 3072 5 1212 344 307 0 0 chr12 82219557 82219652 -39037878 - Lx8 LINE L1 -1152 6321 6240 5 1212 23 0 0 0 chr12 82219685 82219708 -39037822 + AT_rich Low_complexity Low_complexity 1 23 0 5 1212 698 148 23 0 chr12 82219894 82220022 -39037508 - URR1B DNA MER1_type -10 215 85 5 1212 897 100 0 0 chr12 82220126 82220256 -39037274 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 5 1212 1102 82 0 20 chr12 82220273 82220422 -39037108 - B1_Mm SINE Alu 0 147 2 5 1212 1814 293 136 27 chr12 82220433 82221820 -39035710 - Lx8 LINE L1 -2881 2999 1462 5 1212 323 154 289 36 chr12 82222286 82222419 -39035111 - B2_Mm2 SINE B2 -2 191 47 5 1212 1111 136 11 33 chr12 82222466 82222648 -39034882 - B2_Mm1t SINE B2 -14 179 2 5 1212 523 246 104 109 chr12 82222996 82223188 -39034342 - ID_B1 SINE B4 -32 192 2 5 1212 794 296 15 0 chr12 82223909 82224108 -39033422 - B3 SINE B2 -14 202 1 5 1212 294 123 0 69 chr12 82224369 82224456 -39033074 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 5 1212 210 283 0 0 chr12 82224463 82224516 -39033014 + CT-rich Low_complexity Low_complexity 3 55 0 5 1212 1901 287 62 39 chr12 82224879 82225718 -39031812 - L1MB7 LINE L1 -9 6175 5258 5 1212 441 161 0 0 chr12 82225739 82225826 -39031704 + CT-rich Low_complexity Low_complexity 1 87 0 5 1212 975 285 32 17 chr12 82225826 82226172 -39031358 - L1MB7 LINE L1 -1019 5127 4777 5 1212 333 0 0 0 chr12 82226386 82226423 -39031107 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1212 1607 228 79 20 chr12 82226588 82226982 -39030548 + MTD LTR MaLR 1 417 -2 5 1212 706 261 58 19 chr12 82227812 82228019 -39029511 - MIR SINE MIR -16 246 32 5 1212 204 350 59 10 chr12 82228049 82228150 -39029380 + L3 LINE CR1 4027 4132 -357 5 1212 495 0 0 0 chr12 82228246 82228301 -39029229 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 5 1212 348 24 0 0 chr12 82228938 82228979 -39028551 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1212 21 0 0 0 chr12 82228995 82229016 -39028514 + AT_rich Low_complexity Low_complexity 1 21 0 5 1212 1281 122 0 5 chr12 82230557 82230755 -39026775 + Lx LINE L1 6458 6654 0 5 1212 2058 231 2 7 chr12 82230843 82231266 -39026264 + MTC LTR MaLR 1 421 0 5 1212 193 296 42 0 chr12 82231508 82231579 -39025951 + MIR3 SINE MIR 104 177 -31 5 1212 486 0 0 0 chr12 82232885 82232939 -39024591 + (TATAA)n Simple_repeat Simple_repeat 4 57 0 5 1212 732 319 28 39 chr12 82232998 82233026 -39024504 - B4A SINE B4 -2 290 264 5 1212 300 27 0 0 chr12 82233026 82233063 -39024467 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1212 732 319 28 39 chr12 82233063 82233318 -39024212 - B4A SINE B4 -29 263 10 5 1212 2195 42 75 4 chr12 82233411 82233706 -39023824 - L1_Mus2 LINE L1 -86 6496 6185 5 1212 271 158 13 6 chr12 82233705 82233783 -39023747 + L1_Mus3 LINE L1 6484 6594 -44 5 1212 264 267 0 74 chr12 82235414 82235495 -39022035 + MER104 DNA Tc2 4 78 -103 5 1212 385 336 14 7 chr12 82237180 82237318 -39020212 + MER117 DNA MER1_type 59 197 0 5 1212 321 47 0 0 chr12 82237849 82237892 -39019638 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1212 258 81 0 0 chr12 82239607 82239644 -39017886 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 1212 403 284 47 42 chr12 82239644 82239717 -39017813 + MER45B DNA Tip100 844 914 -126 5 1212 237 83 0 0 chr12 82239717 82239753 -39017777 + (CATA)n Simple_repeat Simple_repeat 2 37 0 5 1212 403 284 47 42 chr12 82239753 82239870 -39017660 + MER45B DNA Tip100 915 1034 -6 5 1212 1225 41 0 13 chr12 82240132 82240281 -39017249 + B1_Mm SINE Alu 1 147 0 5 1212 423 102 0 0 chr12 82240855 82240914 -39016616 - URR1B DNA MER1_type 0 225 167 5 1212 856 131 139 24 chr12 82241190 82241355 -39016175 - URR1B DNA MER1_type -32 193 10 5 1212 354 305 148 7 chr12 82244400 82244671 -39012859 + L1MD2 LINE L1 4637 4945 -1201 5 1212 673 310 5 34 chr12 82244686 82244890 -39012640 + B3A SINE B2 1 198 0 5 1212 784 268 99 4 chr12 82245046 82245374 -39012156 + L1MD2 LINE L1 5218 5575 -667 5 1212 317 311 33 11 chr12 82245456 82245547 -39011983 - B1F SINE Alu -56 93 1 5 1212 957 302 131 25 chr12 82245550 82245807 -39011723 + L1MD2 LINE L1 5585 5886 -473 5 1212 450 0 0 0 chr12 82245807 82245857 -39011673 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1212 957 302 131 25 chr12 82245857 82246193 -39011337 + L1MD2 LINE L1 5887 6241 -118 5 1212 332 287 32 11 chr12 82246243 82246338 -39011192 - B1_Mur2 SINE Alu -43 106 10 5 1212 549 294 26 0 chr12 82246253 82246406 -39011124 - ID_B1 SINE B4 -49 175 19 5 1212 267 218 51 13 chr12 82246562 82246641 -39010889 + CT-rich Low_complexity Low_complexity 2 83 0 5 1212 426 39 0 0 chr12 82247222 82247274 -39010256 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 5 1212 615 122 0 58 chr12 82247741 82247897 -39009633 + (CA)n Simple_repeat Simple_repeat 1 147 0 5 1212 642 286 7 0 chr12 82248474 82248614 -39008916 - B1F2 SINE Alu -1 148 8 5 1212 277 380 57 16 chr12 82248512 82248635 -39008895 - B4 SINE B4 -93 199 72 5 1212 306 253 135 110 chr12 82250603 82250803 -39006727 + MER106B DNA MER1_type 899 1058 -1 5 1212 204 125 0 0 chr12 82251502 82251534 -39005996 + (TTC)n Simple_repeat Simple_repeat 1 32 0 5 1212 396 0 0 0 chr12 82251850 82251894 -39005636 + (TTA)n Simple_repeat Simple_repeat 2 45 0 5 1212 216 0 0 0 chr12 82252612 82252636 -39004894 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1212 364 309 36 0 chr12 82253919 82254003 -39003527 - PB1D7 SINE Alu -6 114 28 5 1212 222 269 0 0 chr12 82255212 82255264 -39002266 - ID4 SINE ID -30 53 2 5 1212 449 330 4 5 chr12 82255264 82255372 -39002158 - PB1D10 SINE Alu -37 112 7 5 1212 330 292 46 19 chr12 82255851 82255959 -39001571 + Cheshire DNA MER1_type 174 284 -2136 5 1212 352 216 133 75 chr12 82256334 82256454 -39001076 + MIRb SINE MIR 27 153 -115 5 1212 435 19 0 0 chr12 82258352 82258404 -38999126 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1212 504 0 0 0 chr12 82259961 82260017 -38997513 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1212 298 329 0 0 chr12 82260243 82260322 -38997208 - ID4 SINE ID -4 79 1 5 1212 1362 97 22 0 chr12 82262201 82262386 -38995144 + B2_Mm1t SINE B2 1 189 -4 5 1212 318 293 0 141 chr12 82262918 82263053 -38994477 - PB1D10 SINE Alu -1 116 1 5 1212 591 244 68 39 chr12 82263201 82263406 -38994124 + MLT2C2 LTR ERVL 207 417 -47 5 1212 342 0 0 0 chr12 82263408 82263446 -38994084 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1212 765 33 0 0 chr12 82263446 82263537 -38993993 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 1212 255 179 0 0 chr12 82263539 82263606 -38993924 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1212 210 37 0 0 chr12 82263879 82263906 -38993624 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 1212 743 104 9 0 chr12 82265503 82265618 -38991912 + (TTCC)n Simple_repeat Simple_repeat 1 116 0 5 1212 795 241 43 0 chr12 82265683 82265845 -38991685 - ID_B1 SINE B4 -55 169 1 5 1212 235 325 0 12 chr12 82265920 82266001 -38991529 + MIR SINE MIR 180 259 -3 5 1212 228 135 0 0 chr12 82266633 82266670 -38990860 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 1212 599 275 54 54 chr12 82266670 82266893 -38990637 - B4A SINE B4 -68 224 2 5 1212 438 227 0 0 chr12 82271364 82271452 -38986078 - B1F1 SINE Alu -56 93 6 5 1212 734 246 137 29 chr12 82272005 82272311 -38985219 + MER44A DNA MER2_type 1 339 0 5 1212 216 0 0 0 chr12 82274726 82274750 -38982780 + (TAGG)n Simple_repeat Simple_repeat 1 24 0 5 1212 641 277 0 25 chr12 82275493 82275652 -38981878 + RSINE1 SINE B4 11 165 0 5 1212 200 213 0 0 chr12 82277835 82277882 -38979648 + T-rich Low_complexity Low_complexity 1 47 0 5 1212 8505 34 2 2 chr12 82278136 82279294 -38978236 - L1Md_F2 LINE L1 -1 6581 5424 5 1212 481 344 70 4 chr12 82279440 82279668 -38977862 + B4A SINE B4 1 243 -49 5 1212 492 210 104 42 chr12 82279971 82280115 -38977415 - MLT1A1 LTR MaLR 0 408 256 5 1212 1110 172 54 5 chr12 82282080 82282284 -38975246 - B3 SINE B2 -1 215 2 5 1212 476 368 49 0 chr12 82282915 82283138 -38974392 + MIRb SINE MIR 15 248 -20 5 1212 191 326 118 59 chr12 82283887 82284040 -38973490 + MIRb SINE MIR 6 167 -101 5 1212 253 258 270 0 chr12 82284330 82284419 -38973111 + MIR3 SINE MIR 88 200 -8 5 1212 317 250 22 22 chr12 82284555 82284645 -38972885 + B1_Mur4 SINE Alu 61 150 0 5 1212 229 260 0 0 chr12 82289007 82289057 -38968473 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 5 1212 1346 232 84 17 chr12 82289947 82290294 -38967236 - MTD LTR MaLR -49 370 1 5 1212 466 313 42 12 chr12 82291723 82291891 -38965639 + ERVL-E-int LTR ERVL 3302 3474 -2193 5 1212 2308 163 56 25 chr12 82292033 82292441 -38965089 + MTC LTR MaLR 1 421 0 5 1212 475 323 59 92 chr12 82292580 82292951 -38964579 + MLT1A0 LTR MaLR 3 361 -4 5 1212 1267 270 52 36 chr12 82293377 82293502 -38964028 + L1MA9 LINE L1 5624 5754 -558 5 1212 1305 248 95 25 chr12 82293502 82293974 -38963556 + RLTR16 LTR ERVK 1 505 0 5 1212 1267 270 52 36 chr12 82293974 82294027 -38963503 + L1MA9 LINE L1 5755 5805 -507 5 1212 1162 237 74 103 chr12 82294027 82294417 -38963113 + MTE2a LTR MaLR 1 379 0 5 1212 1267 270 52 36 chr12 82294417 82294790 -38962740 + L1MA9 LINE L1 5806 6185 -127 5 1212 230 116 0 23 chr12 82294795 82294839 -38962691 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 5 1212 333 229 29 0 chr12 82295081 82295151 -38962379 - ID4 SINE ID 0 83 12 5 1212 238 262 57 40 chr12 82295395 82295525 -38962005 + MLT1A1 LTR MaLR 239 408 0 5 1212 379 337 165 30 chr12 82296234 82296346 -38961184 + MLT1J2 LTR MaLR 58 173 -271 5 1212 414 0 0 0 chr12 82296346 82296392 -38961138 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1212 428 337 165 30 chr12 82296392 82296618 -38960912 + MLT1J2 LTR MaLR 174 442 -2 5 1212 180 179 0 0 chr12 82297122 82297161 -38960369 + CT-rich Low_complexity Low_complexity 4 42 0 6 1212 468 0 0 0 chr12 82297161 82297213 -38960317 + (CCTA)n Simple_repeat Simple_repeat 1 52 0 6 1212 498 124 0 0 chr12 82297922 82298011 -38959519 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 1212 223 259 139 61 chr12 82298445 82298560 -38958970 + L2c LINE L2 3260 3383 -4 6 1212 28 0 0 0 chr12 82298924 82298952 -38958578 + AT_rich Low_complexity Low_complexity 1 28 0 6 1212 23 68 0 0 chr12 82299009 82299053 -38958477 + AT_rich Low_complexity Low_complexity 1 44 0 6 1212 405 0 0 0 chr12 82299140 82299185 -38958345 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1212 198 269 165 41 chr12 82300938 82301035 -38956495 + MIRm SINE MIR 36 144 -132 6 1212 285 284 133 27 chr12 82301841 82302017 -38955513 + MLT2B3 LTR ERVL 1 189 -331 6 1212 261 327 110 25 chr12 82302100 82302263 -38955267 + MTE2b LTR MaLR 202 378 -1 6 1212 184 379 48 73 chr12 82302547 82302712 -38954818 + L2b LINE L2 3215 3375 0 6 1212 329 329 68 34 chr12 82304133 82304287 -38953243 + MIR3 SINE MIR 19 188 -80 6 1212 181 312 46 15 chr12 82304658 82304723 -38952807 - MIRb SINE MIR -70 198 132 6 1212 588 226 7 42 chr12 82305356 82305499 -38952031 - B1_Mur2 SINE Alu -11 138 1 6 1212 593 344 64 36 chr12 82307442 82307975 -38949555 - Lx8 LINE L1 -21 7452 6905 6 1212 390 42 0 0 chr12 82309550 82309598 -38947932 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1212 182 306 66 83 chr12 82310231 82310352 -38947178 - MIRm SINE MIR -124 152 34 6 1212 228 67 0 0 chr12 82310642 82310672 -38946858 + (CAG)n Simple_repeat Simple_repeat 3 32 0 6 1213 249 33 0 0 chr12 82313924 82313954 -38943576 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1213 784 185 7 40 chr12 82316212 82316364 -38941166 + B1_Mus2 SINE Alu 1 147 0 6 1213 516 226 13 0 chr12 82316470 82316705 -38940825 + (TG)n Simple_repeat Simple_repeat 1 238 0 6 1213 414 0 0 0 chr12 82317431 82317477 -38940053 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1213 219 337 10 10 chr12 82317573 82317672 -38939858 + GA-rich Low_complexity Low_complexity 2 100 0 6 1213 700 213 132 0 chr12 82318143 82318315 -38939215 - MER44B DNA MER2_type -7 543 349 6 1213 581 279 7 20 chr12 82318315 82318465 -38939065 + B1F SINE Alu 1 148 -1 6 1213 229 273 37 49 chr12 82318495 82318576 -38938954 - MER44B DNA MER2_type -436 114 35 6 1213 205 309 33 111 chr12 82319856 82320009 -38937521 + MIR SINE MIR 32 172 -90 6 1213 243 0 0 0 chr12 82320804 82320831 -38936699 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 6 1213 193 293 112 71 chr12 82320868 82320968 -38936562 + L2a LINE L2 2663 2771 -648 6 1213 648 26 0 0 chr12 82320968 82321046 -38936484 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1213 193 293 112 71 chr12 82321046 82321083 -38936447 + L2a LINE L2 2772 2811 -608 6 1213 369 271 74 44 chr12 82321083 82321218 -38936312 + B1F SINE Alu 1 139 -10 6 1213 193 293 112 71 chr12 82321218 82321248 -38936282 + L2a LINE L2 2812 2837 -582 6 1213 268 322 69 98 chr12 82321317 82321720 -38935810 + L2a LINE L2 2969 3401 -25 6 1213 242 73 24 0 chr12 82321813 82321854 -38935676 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 6 1213 548 264 7 28 chr12 82323391 82323535 -38933995 - MER96B DNA hAT -33 384 244 6 1213 180 0 0 0 chr12 82323782 82323802 -38933728 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1213 195 100 0 0 chr12 82323830 82323860 -38933670 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1213 210 284 0 0 chr12 82323890 82323999 -38933531 + (TG)n Simple_repeat Simple_repeat 2 110 0 6 1213 188 272 0 19 chr12 82324006 82324111 -38933419 + (TATATG)n Simple_repeat Simple_repeat 6 108 0 6 1213 203 262 12 0 chr12 82324152 82324232 -38933298 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1213 462 75 0 0 chr12 82324242 82324309 -38933221 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1213 383 265 51 162 chr12 82325121 82325303 -38932227 + B3A SINE B2 1 161 -34 6 1213 342 0 0 0 chr12 82325303 82325341 -38932189 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1213 298 265 51 162 chr12 82325341 82325374 -38932156 + B2_Mm2 SINE B2 162 191 -4 6 1213 272 310 52 37 chr12 82325413 82325547 -38931983 - MER5A DNA MER1_type -24 165 30 6 1213 310 358 42 5 chr12 82325589 82325780 -38931750 + L2a LINE L2 2949 3146 -280 6 1213 197 333 67 50 chr12 82325848 82325968 -38931562 + L2a LINE L2 3264 3385 -2 6 1213 322 335 33 39 chr12 82326409 82326589 -38930941 + MIRb SINE MIR 79 257 -11 6 1213 459 0 0 0 chr12 82328534 82328585 -38928945 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 6 1213 347 301 96 20 chr12 82328860 82329056 -38928474 + MIRb SINE MIR 9 219 -49 6 1213 981 74 0 0 chr12 82329423 82329558 -38927972 + (GGGAA)n Simple_repeat Simple_repeat 1 135 0 6 1213 383 298 99 7 chr12 82329951 82330093 -38927437 - MIRc SINE MIR -103 165 11 6 1213 411 328 53 0 chr12 82330477 82330508 -38927022 + B4 SINE B4 55 92 -200 6 1213 663 244 0 16 chr12 82330508 82330629 -38926901 + B1_Mm SINE Alu 2 120 -27 6 1213 420 293 24 8 chr12 82330640 82330764 -38926766 - B1F SINE Alu 0 149 24 6 1213 184 381 0 12 chr12 82332061 82332146 -38925384 - MIR SINE MIR -69 139 56 6 1213 432 161 0 0 chr12 82332649 82332730 -38924800 + CT-rich Low_complexity Low_complexity 2 82 0 6 1213 272 236 54 27 chr12 82333947 82334021 -38923509 - L2c LINE L2 -49 3338 3263 6 1213 443 294 67 12 chr12 82334133 82334298 -38923232 - MIR SINE MIR -32 230 57 6 1213 1685 178 81 11 chr12 82334386 82334756 -38922774 - MTD LTR MaLR -21 398 3 6 1213 184 77 0 0 chr12 82334779 82334805 -38922725 - MIR SINE MIR -2 260 235 6 1213 269 280 45 71 chr12 82334825 82334979 -38922551 - MIRc SINE MIR -117 151 2 6 1213 205 351 115 19 chr12 82336615 82336824 -38920706 + L2 LINE L2 650 878 -2541 6 1213 975 265 156 44 chr12 82337260 82337599 -38919931 + MTE2a LTR MaLR 1 377 -2 6 1213 1686 176 35 49 chr12 82337930 82338659 -38918871 + RMER19B LTR ERVK 1 902 0 6 1213 542 286 45 15 chr12 82338901 82339103 -38918427 - L1MA6 LINE L1 -1 6299 6092 6 1213 252 241 154 130 chr12 82339921 82340083 -38917447 - Charlie4z DNA MER1_type -1 166 1 6 1213 517 342 46 36 chr12 82341209 82341522 -38916008 + ORR1E LTR MaLR 1 317 -53 6 1213 219 261 111 56 chr12 82343659 82343785 -38913745 - MIRc SINE MIR -33 235 103 6 1213 189 0 0 0 chr12 82344853 82344874 -38912656 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1213 414 121 0 0 chr12 82345215 82345281 -38912249 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1213 252 0 0 0 chr12 82345812 82345840 -38911690 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1213 471 35 0 0 chr12 82345841 82345898 -38911632 + (TATG)n Simple_repeat Simple_repeat 2 58 0 6 1213 22 35 0 0 chr12 82346362 82346391 -38911139 + AT_rich Low_complexity Low_complexity 1 29 0 6 1213 235 307 178 0 chr12 82346785 82346886 -38910644 + MER58C DNA MER1_type 32 150 -65 6 1213 459 0 0 0 chr12 82347030 82347081 -38910449 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1213 354 23 0 0 chr12 82347082 82347125 -38910405 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1213 558 188 71 14 chr12 82347127 82347267 -38910263 + ORR1D1 LTR MaLR 170 317 -57 6 1213 477 50 0 0 chr12 82347267 82347327 -38910203 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 6 1213 848 172 0 6 chr12 82347329 82347499 -38910031 + CT-rich Low_complexity Low_complexity 4 172 0 6 1213 722 194 65 0 chr12 82347731 82347870 -38909660 + B1_Mur3 SINE Alu 2 149 0 6 1213 540 323 49 53 chr12 82348238 82348483 -38909047 + B4 SINE B4 49 292 0 6 1213 2908 53 25 20 chr12 82348713 82349116 -38908414 + L1Md_F2 LINE L1 6177 6581 -1 6 1213 452 333 91 41 chr12 82349143 82349772 -38907758 - L1MEc LINE L1 -3632 2687 2018 6 1213 1612 216 23 14 chr12 82349963 82350310 -38907220 - ORR1D1 LTR MaLR -6 368 19 6 1213 210 303 38 38 chr12 82350802 82350881 -38906649 - ID4_ SINE ID -4 79 1 6 1213 567 301 14 0 chr12 82351095 82351238 -38906292 - RSINE1 SINE B4 -19 146 2 6 1213 3424 239 25 19 chr12 82351981 82352754 -38904776 + Lx9 LINE L1 6504 7280 -364 6 1213 1124 164 8 83 chr12 82352768 82353021 -38904509 + RLTR31_Mm LTR ERVK 304 537 -24 6 1213 730 148 33 0 chr12 82353023 82353145 -38904385 + Lx9 LINE L1 7329 7454 -190 6 1213 224 77 0 25 chr12 82353164 82353204 -38904326 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1213 244 228 18 0 chr12 82353356 82353413 -38904117 + (CATA)n Simple_repeat Simple_repeat 1 58 0 6 1213 443 230 132 70 chr12 82353476 82353719 -38903811 - Lx9 LINE L1 -1 7643 7386 6 1213 422 320 25 75 chr12 82353741 82353981 -38903549 + L1M5 LINE L1 3498 3725 -2421 6 1213 350 213 13 0 chr12 82354046 82354121 -38903409 - ID SINE ID -147 77 2 6 1213 557 229 189 42 chr12 82354450 82354641 -38902889 - ID_B1 SINE B4 -5 219 1 6 1213 5529 60 19 0 chr12 82354663 82355349 -38902181 + L1Md_F2 LINE L1 4888 5586 -297 6 1213 8313 48 0 1 chr12 82355350 82356346 -38901184 + L1Md_F2 LINE L1 5588 6582 0 6 1213 218 233 0 0 chr12 82356458 82356501 -38901029 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 6 1213 824 274 54 19 chr12 82356599 82356859 -38900671 + B4 SINE B4 8 276 -16 6 1213 271 294 68 14 chr12 82356906 82357054 -38900476 + L1M5 LINE L1 4463 4618 -1528 6 1213 459 246 73 8 chr12 82357071 82357194 -38900336 + B1F SINE Alu 3 133 -16 6 1213 1620 147 131 29 chr12 82357212 82357562 -38899968 + ORR1D1-int LTR MaLR 972 1357 -13 6 1213 239 186 23 0 chr12 82357565 82357651 -38899879 + (TCTCTG)n Simple_repeat Simple_repeat 3 90 0 6 1213 1041 177 29 5 chr12 82357651 82357855 -38899675 + ORR1D1 LTR MaLR 166 374 0 6 1213 3138 74 2 0 chr12 82360988 82361382 -38896148 + MTB LTR MaLR 2 396 -4 6 1213 642 299 6 17 chr12 82361914 82362094 -38895436 + B3 SINE B2 7 184 -32 6 1213 315 0 0 0 chr12 82362094 82362129 -38895401 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1213 539 292 43 12 chr12 82363181 82363344 -38894186 + B3A SINE B2 9 176 -22 7 1213 474 298 99 30 chr12 82364128 82364360 -38893170 - MLT1C LTR MaLR -199 268 21 7 1213 298 209 155 56 chr12 82365198 82365341 -38892189 - MIR3 SINE MIR -96 172 15 7 1213 499 154 8 8 chr12 82365739 82365857 -38891673 + (TG)n Simple_repeat Simple_repeat 1 118 0 7 1213 411 219 148 39 chr12 82366398 82366526 -38891004 + B1_Mur2 SINE Alu 5 146 -3 7 1213 1410 142 4 18 chr12 82366958 82367187 -38890343 + URR1A DNA MER1_type 1 226 0 7 1213 555 56 0 0 chr12 82367321 82367392 -38890138 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1213 400 268 129 18 chr12 82367392 82367535 -38889995 - B3A SINE B2 -53 163 7 7 1213 465 19 0 0 chr12 82367966 82368020 -38889510 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1213 315 0 0 0 chr12 82368126 82368161 -38889369 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1213 30 0 0 0 chr12 82368758 82368788 -38888742 + AT_rich Low_complexity Low_complexity 1 30 0 7 1213 2338 153 82 8 chr12 82368871 82369260 -38888270 + MTC LTR MaLR 4 421 0 7 1213 894 290 109 42 chr12 82369786 82370318 -38887212 + MER74A LTR ERVL 5 620 -2 7 1213 351 0 0 0 chr12 82370968 82371007 -38886523 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1213 444 116 0 0 chr12 82371007 82371093 -38886437 + (GA)n Simple_repeat Simple_repeat 1 86 0 7 1213 580 305 26 7 chr12 82371479 82371634 -38885896 + ID_B1 SINE B4 35 192 -32 7 1213 203 307 201 59 chr12 82371994 82372198 -38885332 + MIR SINE MIR 9 241 -21 7 1213 618 260 147 25 chr12 82372605 82372802 -38884728 + ID_B1 SINE B4 4 224 0 7 1213 273 306 97 0 chr12 82373044 82373168 -38884362 + MIR3 SINE MIR 52 187 -21 7 1213 187 263 82 31 chr12 82373188 82373286 -38884244 - L2c LINE L2 -1 3386 3284 7 1213 196 331 40 3 chr12 82373496 82373597 -38883933 - MIR3 SINE MIR -35 173 74 7 1213 2591 124 143 7 chr12 82373696 82374150 -38883380 + Lx3C LINE L1 6460 6975 -1 7 1213 22 0 0 0 chr12 82374152 82374174 -38883356 + AT_rich Low_complexity Low_complexity 1 22 0 7 1213 216 300 54 22 chr12 82375072 82375164 -38882366 + MIRb SINE MIR 3 97 -171 7 1213 26 0 0 0 chr12 82375356 82375382 -38882148 + AT_rich Low_complexity Low_complexity 1 26 0 7 1213 244 276 0 0 chr12 82376164 82376222 -38881308 + CT-rich Low_complexity Low_complexity 2 59 0 7 1213 288 0 0 0 chr12 82376701 82376733 -38880797 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1213 411 92 0 0 chr12 82377509 82377574 -38879956 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1213 216 0 0 0 chr12 82379087 82379111 -38878419 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1213 313 337 18 35 chr12 82379158 82379327 -38878203 + L2 LINE L2 2689 2854 -565 7 1213 1256 59 0 0 chr12 82379626 82379796 -38877734 + B2_Mm1a SINE B2 4 173 -20 7 1213 1692 31 0 0 chr12 82379807 82379999 -38877531 + B2_Mm1a SINE B2 2 193 0 7 1213 261 354 69 8 chr12 82382353 82382484 -38875046 + MLT1I LTR MaLR 73 211 -200 7 1213 277 380 76 5 chr12 82382787 82382972 -38874558 + MIRb SINE MIR 50 247 -21 7 1213 198 0 0 0 chr12 82383721 82383743 -38873787 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1213 226 288 0 0 chr12 82384908 82384967 -38872563 + L2 LINE L2 2384 2442 -977 7 1213 378 0 0 0 chr12 82385559 82385601 -38871929 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1213 910 199 73 15 chr12 82385861 82386065 -38871465 + B3 SINE B2 1 216 0 7 1213 1095 97 7 0 chr12 82386230 82386375 -38871155 + B1_Mus2 SINE Alu 2 147 0 7 1213 590 323 92 7 chr12 82386736 82387017 -38870513 + MLT1C LTR MaLR 1 305 -162 7 1213 294 29 0 0 chr12 82388099 82388134 -38869396 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1213 369 0 0 0 chr12 82389398 82389439 -38868091 + (CTAA)n Simple_repeat Simple_repeat 2 42 0 7 1213 240 143 0 0 chr12 82389546 82389588 -38867942 + (CAT)n Simple_repeat Simple_repeat 2 43 0 7 1213 657 251 89 35 chr12 82389590 82389792 -38867738 - B4 SINE B4 -79 213 1 7 1213 193 309 44 0 chr12 82391481 82391549 -38865981 - MIRb SINE MIR -6 262 192 7 1213 1843 154 11 49 chr12 82391555 82391904 -38865626 - ORR1D1-int LTR MaLR -1034 336 1 7 1213 1315 168 137 47 chr12 82391904 82392247 -38865283 - ORR1D1 LTR MaLR 0 374 1 7 1213 320 279 15 0 chr12 82392691 82392759 -38864771 + B4A SINE B4 9 77 -215 7 1213 309 269 29 135 chr12 82392985 82393230 -38864300 + ORR1E LTR MaLR 13 231 -128 7 1213 187 316 25 0 chr12 82393392 82393471 -38864059 - MIR SINE MIR -133 129 49 7 1213 21 0 0 0 chr12 82395179 82395200 -38862330 + AT_rich Low_complexity Low_complexity 1 21 0 7 1213 334 180 218 10 chr12 82396232 82396333 -38861197 + ID_B1 SINE B4 84 205 -19 7 1213 723 181 7 14 chr12 82396625 82396638 -38860892 - B3 SINE B2 -75 141 128 7 1213 1326 78 0 0 chr12 82396638 82396818 -38860712 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1213 723 181 7 14 chr12 82396818 82396944 -38860586 - B3 SINE B2 -89 127 3 7 1213 837 271 82 24 chr12 82396976 82397267 -38860263 - MER82 DNA MER2_type -335 318 11 7 1213 428 296 65 60 chr12 82397934 82398230 -38859300 + MLT1E1 LTR MaLR 7 282 -372 7 1213 283 303 40 10 chr12 82398219 82398319 -38859211 + MLT1E1 LTR MaLR 439 541 -139 7 1213 1114 304 23 29 chr12 82399025 82399370 -38858160 + MTEa LTR MaLR 1 343 -36 7 1213 426 20 0 0 chr12 82400612 82400663 -38856867 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1213 648 0 0 0 chr12 82400822 82400894 -38856636 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 7 1213 933 122 0 0 chr12 82400894 82401040 -38856490 + (TC)n Simple_repeat Simple_repeat 1 147 0 7 1213 619 171 51 0 chr12 82401045 82401162 -38856368 - B1_Mur4 SINE Alu -6 144 22 7 1213 1274 215 146 12 chr12 82401166 82401496 -38856034 - MTEa LTR MaLR -3 376 3 7 1213 475 250 0 57 chr12 82401769 82401875 -38855655 - PB1D10 SINE Alu -13 104 5 7 1213 255 283 18 111 chr12 82402864 82403035 -38854495 + MTEb LTR MaLR 201 355 -24 7 1213 393 298 188 22 chr12 82403036 82403307 -38854223 - MLT1C LTR MaLR -97 370 55 7 1213 258 200 13 26 chr12 82405045 82405122 -38852408 + A-rich Low_complexity Low_complexity 2 77 0 7 1213 251 299 10 40 chr12 82405352 82405453 -38852077 - L1_Rod LINE L1 -1101 4746 4649 7 1213 1115 252 7 36 chr12 82405520 82405821 -38851709 + B4A SINE B4 1 292 0 7 1213 225 0 0 0 chr12 82405862 82405887 -38851643 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1213 279 0 0 0 chr12 82406587 82406618 -38850912 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1213 243 202 89 69 chr12 82406954 82407055 -38850475 - MER117 DNA MER1_type -94 103 1 7 1213 4134 4 2 0 chr12 82407142 82407596 -38849934 + L1Md_A LINE L1 6128 6582 0 7 1213 222 37 0 0 chr12 82408217 82408244 -38849286 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 7 1213 248 0 0 30 chr12 82408302 82408335 -38849195 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 7 1213 266 320 107 80 chr12 82410825 82411012 -38846518 + Tigger12c DNA MER2_type 31 222 -512 7 1213 223 352 31 94 chr12 82411289 82411449 -38846081 + L2a LINE L2 3277 3426 0 7 1213 428 276 149 40 chr12 82411794 82412043 -38845487 - B4 SINE B4 -16 276 1 7 1213 1205 68 0 0 chr12 82412306 82412453 -38845077 + B1_Mus1 SINE Alu 2 148 0 7 1213 796 109 22 0 chr12 82413168 82413306 -38844224 + (AGGGGG)n Simple_repeat Simple_repeat 6 146 0 7 1213 1104 89 7 0 chr12 82417878 82418024 -38839506 + B1_Mm SINE Alu 1 147 0 7 1213 301 314 0 56 chr12 82418530 82418655 -38838875 + L2 LINE L2 2645 2762 -657 7 1213 302 227 0 29 chr12 82418709 82418777 -38838753 - ID4 SINE ID -13 70 5 7 1213 186 380 79 14 chr12 82418860 82419076 -38838454 + L2 LINE L2 2827 3056 -363 7 1213 1146 42 28 0 chr12 82419575 82419718 -38837812 - B1_Mus2 SINE Alu 0 147 1 7 1213 215 170 0 21 chr12 82421443 82421491 -38836039 + GA-rich Low_complexity Low_complexity 3 49 0 7 1213 264 296 24 12 chr12 82421654 82421736 -38835794 - L2 LINE L2 -537 2882 2800 7 1213 336 350 54 5 chr12 82422482 82422672 -38834858 - MIRb SINE MIR -39 229 25 7 1213 199 255 126 45 chr12 82423191 82423302 -38834228 - L2a LINE L2 -43 3383 3264 7 1213 1227 41 0 0 chr12 82423686 82423833 -38833697 + B1_Mm SINE Alu 1 147 0 7 1213 201 143 0 0 chr12 82424003 82424038 -38833492 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1213 362 269 55 18 chr12 82425081 82425191 -38832339 + L2a LINE L2 3310 3423 -3 7 1213 231 344 30 30 chr12 82425219 82425318 -38832212 + L3 LINE CR1 4342 4440 -49 7 1213 395 214 48 10 chr12 82426926 82427030 -38830500 - PB1D10 SINE Alu 0 117 10 7 1213 276 30 0 0 chr12 82427332 82427365 -38830165 + (CATAT)n Simple_repeat Simple_repeat 3 35 0 7 1213 233 249 89 52 chr12 82427411 82427543 -38829987 + L2b LINE L2 3274 3426 0 7 1213 199 244 183 0 chr12 82430679 82430761 -38826769 + L2a LINE L2 3303 3399 -27 7 1213 360 0 0 0 chr12 82431027 82431067 -38826463 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1213 207 0 0 0 chr12 82431242 82431265 -38826265 + (TTG)n Simple_repeat Simple_repeat 3 25 0 7 1213 230 302 198 0 chr12 82431269 82431355 -38826175 - PB1D10 SINE Alu -14 103 1 7 1213 216 339 8 69 chr12 82431480 82431610 -38825920 - L2b LINE L2 -1 3374 3253 7 1213 441 0 0 0 chr12 82431914 82431963 -38825567 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1213 513 0 0 0 chr12 82432827 82432884 -38824646 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1213 306 0 0 0 chr12 82433084 82433118 -38824412 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1213 411 21 0 0 chr12 82433206 82433254 -38824276 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1213 323 164 230 14 chr12 82436133 82436207 -38821323 - Lx8 LINE L1 -313 7160 7071 8 1213 848 87 8 0 chr12 82436332 82436459 -38821071 + (GA)n Simple_repeat Simple_repeat 1 128 0 8 1213 238 191 32 116 chr12 82436556 82436651 -38820879 - L1MB8 LINE L1 -1 6177 6091 8 1213 1057 252 35 46 chr12 82436767 82437050 -38820480 + B4A SINE B4 7 286 -6 8 1213 1415 234 29 107 chr12 82437414 82437825 -38819705 - MTE2b LTR MaLR 0 379 1 8 1213 278 152 42 70 chr12 82438557 82438628 -38818902 + MLT1B LTR MaLR 3 71 -319 8 1213 798 249 166 16 chr12 82438637 82438890 -38818640 + B4A SINE B4 1 291 -1 8 1213 991 95 0 20 chr12 82438913 82439064 -38818466 - RMER6A LTR ERVK -82 674 527 8 1213 204 179 0 0 chr12 82439093 82439132 -38818398 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1213 464 143 0 13 chr12 82439134 82439212 -38818318 - RLTR20B3 LTR ERVK -96 481 405 8 1213 619 155 67 33 chr12 82439206 82439326 -38818204 - RLTR20B3 LTR ERVK -433 144 21 8 1213 488 309 46 41 chr12 82439373 82439662 -38817868 - L1MA4 LINE L1 -5 6286 6010 8 1213 252 297 16 41 chr12 82439828 82439951 -38817579 - L1M5 LINE L1 -920 5524 5405 8 1213 308 286 17 35 chr12 82440152 82440268 -38817262 - L1M5 LINE L1 -882 5264 5151 8 1213 2472 178 67 7 chr12 82440275 82440740 -38816790 + Lx5 LINE L1 6558 7050 0 8 1213 5104 114 12 8 chr12 82440894 82441628 -38815902 - RMER19A LTR ERVK 0 737 1 8 1213 500 335 104 44 chr12 82441694 82442279 -38815251 - L1M5 LINE L1 -1164 4982 4363 8 1213 8684 61 23 10 chr12 82442784 82443968 -38813562 - MusHAL1 LINE L1 -1 2711 1513 8 1213 238 293 143 4 chr12 82443972 82444202 -38813328 - L1M5 LINE L1 -2296 3850 3589 8 151 467 231 122 16 chr12 82444259 82444382 -38813148 - B1_Mur2 SINE Alu -1 148 13 8 1214 262 216 52 39 chr12 82444384 82444407 -38813123 + ID_B1 SINE B4 147 221 0 8 1214 266 216 0 0 chr12 82444407 82444458 -38813072 + PB1 SINE Alu 75 125 -2 8 1214 378 291 176 6 chr12 82444485 82444661 -38812869 - MLT1D LTR MaLR -52 453 248 8 1214 311 238 81 75 chr12 82444710 82444883 -38812647 - L1M5 LINE L1 -2720 3426 3253 8 1214 1064 114 0 6 chr12 82444951 82445128 -38812402 + (TCCC)n Simple_repeat Simple_repeat 2 177 0 8 1214 661 167 134 8 chr12 82445145 82445272 -38812258 - B1_Mus2 SINE Alu 0 147 5 8 1214 219 296 11 22 chr12 82445226 82445316 -38812214 - B4 SINE B4 -157 135 47 8 1214 531 278 34 14 chr12 82445416 82445624 -38811906 - L1MA4 LINE L1 -364 5936 5725 8 1214 1018 90 28 0 chr12 82445650 82445794 -38811736 - B1_Mus1 SINE Alu 0 148 1 8 1214 1274 98 38 0 chr12 82445889 82446072 -38811458 - B2_Mm2 SINE B2 -4 191 2 8 1214 722 216 165 0 chr12 82446111 82446287 -38811243 - B3 SINE B2 -7 209 5 8 1214 22 35 0 0 chr12 82446374 82446403 -38811127 + AT_rich Low_complexity Low_complexity 1 29 0 8 1214 29837 76 8 10 chr12 82446410 82448243 -38809287 - L1_Mus1 LINE L1 0 6567 4737 8 1214 423 0 0 0 chr12 82448243 82448290 -38809240 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 8 1214 29837 104 6 6 chr12 82448290 82451990 -38805540 - L1_Mus1 LINE L1 -1147 4736 1071 8 1214 36834 34 3 6 chr12 82451996 82458169 -38799361 - L1Md_A LINE L1 0 6582 439 8 1214 2293 172 9 11 chr12 82458164 82458627 -38798903 - L1Md_F LINE L1 -5488 1031 570 8 1214 1140 64 0 0 chr12 82458898 82459054 -38798476 - Lx5 LINE L1 -1252 5798 5643 8 1214 269 230 27 0 chr12 82459053 82459127 -38798403 + L1_Mur1 LINE L1 1901 1976 -3910 8 1214 287 25 25 0 chr12 82459674 82459714 -38797816 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 8 1214 189 195 0 0 chr12 82459937 82459978 -38797552 + A-rich Low_complexity Low_complexity 1 41 0 8 1214 22 35 0 0 chr12 82460414 82460443 -38797087 + AT_rich Low_complexity Low_complexity 1 29 0 8 1214 2254 197 68 12 chr12 82460480 82460968 -38796562 - Lx5 LINE L1 -3 7047 6533 8 1214 449 271 122 0 chr12 82461169 82461276 -38796254 - B1F1 SINE Alu -27 122 3 8 1214 203 408 0 0 chr12 82461501 82461577 -38795953 - MIRb SINE MIR -75 193 118 8 1214 517 317 78 65 chr12 82461734 82462055 -38795475 - MER73 LTR ERVL -2 642 318 8 1214 1250 328 81 25 chr12 82462241 82462948 -38794582 - HERVL74-int LTR ERVL -2360 3325 2580 8 1214 3525 68 31 2 chr12 82463095 82463553 -38793977 - L1_Mus3 LINE L1 -8 6630 6160 8 1214 398 335 70 16 chr12 82463612 82463855 -38793675 - HERVL74-int LTR ERVL -3153 2532 2277 8 1214 397 262 47 8 chr12 82463889 82464016 -38793514 - HERVL74-int LTR ERVL -3758 1927 1796 8 1214 253 77 19 37 chr12 82464123 82464177 -38793353 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 8 1214 255 288 97 18 chr12 82464180 82464293 -38793237 - PB1 SINE Alu -2 125 4 8 1214 1199 309 66 11 chr12 82464300 82464922 -38792608 - HERVL74-int LTR ERVL -3907 1778 1123 8 1214 1493 177 153 0 chr12 82464924 82465224 -38792306 - ORR1C2 LTR MaLR -36 348 3 8 1214 228 367 83 17 chr12 82465945 82466125 -38791405 - MIRc SINE MIR -14 254 63 8 1214 6561 173 45 39 chr12 82466240 82467662 -38789868 + Lx5 LINE L1 5620 7050 0 8 1214 255 79 0 0 chr12 82467664 82467702 -38789828 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 8 1214 277 333 96 15 chr12 82468084 82468282 -38789248 + Lx9 LINE L1 7212 7425 -219 8 1214 678 125 0 0 chr12 82468286 82468398 -38789132 + (CATA)n Simple_repeat Simple_repeat 3 114 0 8 1214 369 162 0 0 chr12 82468527 82468595 -38788935 + (ATG)n Simple_repeat Simple_repeat 3 70 0 8 1214 561 68 0 0 chr12 82468802 82468876 -38788654 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 8 1214 5962 86 4 7 chr12 82469784 82471359 -38786171 + L1VL4 LINE L1 194 1763 -1796 8 1214 7000 113 8 1 chr12 82471358 82472655 -38784875 + Lx2 LINE L1 5339 6643 -354 8 1214 1300 123 13 31 chr12 82472655 82472882 -38784648 + Lx2 LINE L1 6775 6997 0 8 1214 262 277 212 0 chr12 82474279 82474416 -38783114 - MTD-int LTR MaLR -1092 166 1 8 1214 848 232 203 8 chr12 82474419 82474675 -38782855 - MTD LTR MaLR -3 416 111 8 1214 885 262 20 25 chr12 82474689 82474885 -38782645 - B3 SINE B2 -21 195 1 8 1214 2031 176 8 59 chr12 82475570 82476047 -38781483 - RLTR11B LTR ERVK 0 453 1 8 1214 2190 162 112 33 chr12 82476594 82477078 -38780452 + RLTR12B LTR ERVK 5 526 -2 8 1214 710 23 11 0 chr12 82477112 82477200 -38780330 + (TC)n Simple_repeat Simple_repeat 2 90 0 8 1214 1165 37 0 0 chr12 82477214 82477349 -38780181 - B1_Mus1 SINE Alu -13 135 1 8 1214 707 273 42 0 chr12 82477731 82477896 -38779634 + B3A SINE B2 1 172 -26 8 1214 280 99 27 40 chr12 82480998 82481072 -38776458 + (TA)n Simple_repeat Simple_repeat 2 74 0 8 1214 210 118 0 0 chr12 82481335 82481369 -38776161 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1214 1838 269 132 102 chr12 82481427 82482696 -38774834 - RMER12 LTR ERVK -12 1310 4 8 1214 1335 228 18 25 chr12 82483602 82483885 -38773645 - MTD LTR MaLR -1 418 138 8 1214 2717 144 13 4 chr12 82483877 82484331 -38773199 + RMER12B LTR ERVK 108 565 -839 8 1214 469 258 15 75 chr12 82484342 82484476 -38773054 + RLTR21 LTR ERVK 1376 1501 -71 8 1214 4222 190 32 23 chr12 82484492 82485313 -38772217 + L1_Mur3 LINE L1 1793 2619 -3261 8 1214 243 0 0 0 chr12 82485313 82485340 -38772190 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1214 4222 190 32 23 chr12 82485340 82485559 -38771971 + L1_Mur3 LINE L1 2620 2841 -3039 8 1214 2599 220 14 48 chr12 82485546 82486191 -38771339 + Lx5 LINE L1 6417 7039 -11 8 1214 1496 183 23 84 chr12 82486210 82486281 -38771249 + L1_Mur3 LINE L1 2851 2906 -2974 8 1214 1420 55 55 0 chr12 82486281 82486464 -38771066 + B2_Mm1t SINE B2 1 193 0 8 1214 1496 183 23 84 chr12 82486464 82486905 -38770625 + L1_Mur3 LINE L1 2907 3332 -2548 8 1214 510 143 11 0 chr12 82486911 82487002 -38770528 + RMER16 LTR ERVK 442 533 0 8 1214 3467 194 93 29 chr12 82487008 82487774 -38769756 + L1_Mur3 LINE L1 3807 4626 -1254 8 1214 516 16 0 0 chr12 82487774 82487835 -38769695 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1214 3467 194 93 29 chr12 82487835 82488042 -38769488 + L1_Mur3 LINE L1 4627 4842 -1038 8 1214 615 158 0 73 chr12 82488087 82488224 -38769306 - Lx7 LINE L1 -1 7695 7569 8 1214 207 100 0 0 chr12 82488477 82488507 -38769023 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1214 369 247 86 74 chr12 82488529 82488691 -38768839 - RMER21B LTR ERV1 -370 472 309 8 1214 25 51 0 0 chr12 82488822 82488861 -38768669 + AT_rich Low_complexity Low_complexity 1 39 0 8 1214 36 40 0 0 chr12 82488896 82488946 -38768584 + AT_rich Low_complexity Low_complexity 1 50 0 8 1214 230 132 28 42 chr12 82489173 82489244 -38768286 + (TAA)n Simple_repeat Simple_repeat 2 71 0 8 1214 33275 58 3 7 chr12 82489963 82492352 -38765178 - L1Md_F2 LINE L1 0 6585 4199 8 1214 279 0 0 0 chr12 82492352 82492383 -38765147 + (CATAT)n Simple_repeat Simple_repeat 3 33 0 8 1214 33275 68 3 10 chr12 82492383 82496233 -38761297 - L1Md_F2 LINE L1 -1688 4198 285 8 1214 723 147 7 20 chr12 82496273 82496290 -38761240 + polypurine Low_complexity Low_complexity 2 17 0 8 1214 998 114 0 0 chr12 82496290 82496430 -38761100 + B1_Mus1 SINE Alu 2 141 -7 8 1214 723 147 7 20 chr12 82496430 82496565 -38760965 + GA-rich Low_complexity Low_complexity 18 151 0 8 1214 2487 232 90 65 chr12 82496580 82497314 -38760216 - Lx6 LINE L1 -136 7324 6573 8 1214 482 289 74 52 chr12 82497309 82497906 -38759624 + L1_Mur3 LINE L1 4871 5516 -784 8 1214 680 121 8 0 chr12 82497915 82498047 -38759483 + (GA)n Simple_repeat Simple_repeat 2 134 0 8 1214 904 301 19 32 chr12 82498061 82498472 -38759058 + L1_Rod LINE L1 5442 5847 0 8 1214 219 114 0 0 chr12 82498501 82498536 -38758994 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1214 407 322 57 92 chr12 82499228 82499555 -38757975 + ORR1D2 LTR MaLR 64 370 0 8 1214 396 271 111 83 chr12 82500095 82500224 -38757306 - L1MC LINE L1 -2057 4089 3958 1 1214 318 50 0 0 chr12 82500224 82500264 -38757266 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1214 303 270 0 16 chr12 82500269 82500333 -38757197 - ID4_ SINE ID -18 65 3 3 1214 396 271 111 83 chr12 82500333 82500450 -38757080 - L1MC LINE L1 -2192 3954 3830 1 1214 921 115 58 0 chr12 82500648 82500787 -38756743 + Lx5 LINE L1 5388 5534 -343 4 1214 2815 156 13 13 chr12 82501237 82501765 -38755765 + Lx5 LINE L1 5537 6070 -980 4 1214 1707 110 16 0 chr12 82501776 82502021 -38755509 - ORR1A2 LTR MaLR 0 327 79 5 1214 498 221 33 20 chr12 82502021 82502173 -38755357 + Lx5 LINE L1 6897 7050 0 4 1214 226 211 14 72 chr12 82502808 82502946 -38754584 + (TATAA)n Simple_repeat Simple_repeat 2 131 0 6 1214 246 81 0 0 chr12 82503495 82503532 -38753998 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 7 1214 955 162 7 7 chr12 82503532 82503681 -38753849 - B1_Mur4 SINE Alu 0 150 2 8 1214 360 281 16 58 chr12 82503711 82503832 -38753698 + RMER30 DNA MER1_type 85 200 -2 9 1214 2440 73 0 7 chr12 82504303 82504607 -38752923 - L1_Mus1 LINE L1 0 6567 6266 1 1214 360 321 120 25 chr12 82504927 82505202 -38752328 + L1MEg LINE L1 1051 1351 -4733 1 1214 713 235 169 24 chr12 82505212 82505461 -38752069 + B4 SINE B4 2 286 -6 1 1214 224 288 0 0 chr12 82505465 82505524 -38752006 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1214 754 286 14 14 chr12 82505534 82505750 -38751780 + B4A SINE B4 1 216 -76 1 1214 906 85 16 0 chr12 82505870 82505999 -38751531 + L1_Mus2 LINE L1 6436 6566 0 1 1214 357 82 0 0 chr12 82506091 82506140 -38751390 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1214 180 0 0 0 chr12 82506166 82506186 -38751344 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1214 378 0 0 0 chr12 82506187 82506229 -38751301 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1214 255 31 0 0 chr12 82506229 82506260 -38751270 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1214 353 340 19 0 chr12 82506324 82506430 -38751100 - PB1D10 SINE Alu 0 117 10 1 1214 6223 85 9 31 chr12 82507170 82508828 -38748702 + L1VL2 LINE L1 210 1826 -1789 2 1214 215 197 16 16 chr12 82509794 82509856 -38747674 + A-rich Low_complexity Low_complexity 1 62 0 2 1214 322 319 42 8 chr12 82510206 82510326 -38747204 - B1F1 SINE Alu -25 124 1 2 1214 1302 82 16 0 chr12 82511979 82512162 -38745368 + B2_Mm2 SINE B2 1 186 -9 2 1214 6981 87 51 4 chr12 82512202 82513143 -38744387 - Lx3_Mus LINE L1 0 7009 6025 2 1214 1894 198 104 83 chr12 82513355 82513872 -38743658 + RLTR11A LTR ERVK 1 528 0 2 1214 189 147 0 0 chr12 82514321 82514355 -38743175 + (GGGAGA)n Simple_repeat Simple_repeat 2 35 0 2 1214 352 303 0 0 chr12 82514609 82514685 -38742845 + B1_Mus2 SINE Alu 50 125 -22 2 1214 449 226 8 0 chr12 82514619 82514752 -38742778 + ORR1B1-int LTR MaLR 707 840 -669 2 1214 2125 163 110 35 chr12 82516058 82516522 -38741008 + RLTR12B LTR ERVK 5 503 -25 2 1214 627 268 51 0 chr12 82516948 82517086 -38740444 + B3A SINE B2 1 145 -53 3 1214 8757 39 0 0 chr12 82517086 82518117 -38739413 + L1Md_F2 LINE L1 4556 5586 -297 3 1214 8639 41 2 11 chr12 82518118 82519113 -38738417 + L1Md_F2 LINE L1 5588 6573 -9 3 1214 573 288 50 0 chr12 82519123 82519262 -38738268 + B3A SINE B2 27 172 -26 3 1214 2247 133 0 0 chr12 82519314 82519652 -38737878 - L1_Mm LINE L1 -1646 4237 3900 3 1214 5344 105 39 3 chr12 82519652 82520390 -38737140 + Lx LINE L1 5889 6653 -1 3 1214 196 149 43 0 chr12 82523210 82523257 -38734273 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1214 1305 115 38 11 chr12 82523388 82523573 -38733957 - B2_Mm2 SINE B2 -4 191 2 3 1214 25 0 0 0 chr12 82523584 82523609 -38733921 + AT_rich Low_complexity Low_complexity 1 25 0 3 1214 216 97 0 0 chr12 82523705 82523736 -38733794 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 3 1214 1023 213 63 94 chr12 82523838 82523897 -38733633 - RMER12 LTR ERVK -44 1278 1222 3 1214 4265 58 6 2 chr12 82523897 82524398 -38733132 + RLTR1C LTR ERV1 1 503 0 4 1214 1023 213 77 80 chr12 82524398 82524716 -38732814 - RMER12 LTR ERVK -101 1221 702 3 1214 403 244 38 131 chr12 82524687 82524923 -38732607 - RLTR22_Mur LTR ERVK -998 810 590 4 1214 346 52 17 0 chr12 82524925 82524983 -38732547 - L1_Mus3 LINE L1 -4 6634 6576 4 1214 4188 61 8 23 chr12 82524983 82525503 -38732027 + RLTR1B LTR ERV1 1 512 0 4 1214 14362 222 39 14 chr12 82525503 82530994 -38726536 + MMERGLN-int LTR ERV1 1 5632 -1924 4 1214 5132 255 11 7 chr12 82531618 82532780 -38724750 + MMERGLN-int LTR ERV1 6390 7556 0 4 1214 4080 73 8 25 chr12 82532780 82533301 -38724229 + RLTR1B LTR ERV1 1 512 0 4 1214 6817 76 46 19 chr12 82533302 82533809 -38723721 - L1_Mus3 LINE L1 -60 6578 6046 4 1214 3222 50 0 0 chr12 82533809 82534166 -38723364 + IAPEY2_LTR LTR ERVK 1 357 0 4 1214 6817 76 46 19 chr12 82534166 82534596 -38722934 - L1_Mus3 LINE L1 -593 6045 5616 4 1214 470 276 85 52 chr12 82534627 82535042 -38722488 - RMER12 LTR ERVK -595 809 187 4 1214 1510 148 4 8 chr12 82535042 82535301 -38722229 - RLTR22_Mur LTR ERVK 0 1848 1591 4 1214 5274 91 13 34 chr12 82535564 82535946 -38721584 - RLTR22_Mur LTR ERVK -1042 806 441 4 1214 5729 100 11 27 chr12 82535946 82536767 -38720763 + RLTR13C2 LTR ERVK 1 808 0 4 1214 5274 91 13 34 chr12 82536767 82537207 -38720323 - RLTR22_Mur LTR ERVK -1408 440 1 4 1214 858 188 117 6 chr12 82537207 82537378 -38720152 - RMER12 LTR ERVK -1129 193 4 4 1214 3961 2 0 0 chr12 82537502 82537914 -38719616 + L1Md_A LINE L1 6171 6582 0 4 1214 3595 188 29 23 chr12 82538033 82538524 -38719006 + L1VL4 LINE L1 194 701 -5601 5 1214 4989 67 2 0 chr12 82538524 82539110 -38718420 + LTRIS_Mus LTR ERV1 1 587 0 5 1214 14809 131 28 17 chr12 82539110 82539762 -38717768 + L1VL4 LINE L1 702 1342 -2217 5 1214 3614 34 2 132 chr12 82539762 82540263 -38717267 + RLTR10C LTR ERVK 1 436 0 5 1214 14809 114 27 15 chr12 82540263 82542167 -38715363 + L1VL4 LINE L1 1343 3278 -281 5 1214 398 195 0 0 chr12 82542167 82542244 -38715286 + L1M2 LINE L1 3655 3731 -2412 5 1214 232 108 54 0 chr12 82542250 82542287 -38715243 + L1VL4 LINE L1 361 399 -6258 5 1214 6345 127 8 17 chr12 82542289 82543029 -38714501 + L1VL4 LINE L1 376 1123 -5534 5 1214 1427 95 16 0 chr12 82543029 82543218 -38714312 + B2_Mm1t SINE B2 1 192 -1 5 1214 6345 120 12 26 chr12 82543218 82544070 -38713460 + L1VL4 LINE L1 1124 1973 -3907 5 1214 343 220 33 70 chr12 82544070 82544186 -38713344 - RLTR13D3 LTR ERVK -42 1072 870 5 1214 225 0 0 0 chr12 82544192 82544217 -38713313 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1214 5174 174 29 73 chr12 82544217 82544465 -38713065 + L1VL4 LINE L1 1981 2220 -1694 5 1214 266 128 0 0 chr12 82544465 82544504 -38713026 - B2_Mm2 SINE B2 -156 39 1 5 1214 5174 174 29 73 chr12 82544504 82545812 -38711718 + L1VL4 LINE L1 2221 3491 -423 5 1214 1279 174 81 0 chr12 82545844 82546080 -38711450 - RLTR17 LTR ERVK -20 672 418 5 1214 4987 150 32 59 chr12 82546082 82546638 -38710892 - MYSERV6-int LTR ERVK -4826 4133 3587 6 1214 1127 115 0 0 chr12 82546638 82546786 -38710744 + B1_Mus1 SINE Alu 1 148 0 6 1214 243 0 0 0 chr12 82546791 82546818 -38710712 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1214 4987 150 32 59 chr12 82546818 82547254 -38710276 - MYSERV6-int LTR ERVK -5373 3586 3162 6 1214 2408 185 52 21 chr12 82547294 82547770 -38709760 - ORR1A3-int LTR MaLR -650 1313 823 6 1214 2737 177 17 11 chr12 82547786 82548313 -38709217 - MYSERV6-int LTR ERVK -5782 3177 2648 6 1214 1222 75 0 0 chr12 82548341 82548487 -38709043 + B1_Mus2 SINE Alu 2 147 0 6 1214 221 135 19 0 chr12 82548492 82548544 -38708986 + A-rich Low_complexity Low_complexity 2 54 0 6 1214 4373 141 6 0 chr12 82548544 82549246 -38708284 - L1_Mur2 LINE L1 -1201 4676 3971 6 1214 221 179 0 0 chr12 82549253 82549292 -38708238 + T-rich Low_complexity Low_complexity 1 39 0 6 1214 1240 55 7 7 chr12 82549292 82549439 -38708091 - B1_Mm SINE Alu 0 147 1 6 1214 1472 212 19 57 chr12 82549441 82549798 -38707732 - RMER19C LTR ERVK -11 600 207 6 1214 2279 101 6 0 chr12 82549820 82550137 -38707393 + ORR1A2 LTR MaLR 1 319 -8 7 1214 1083 218 13 89 chr12 82550168 82550470 -38707060 - RMER19C LTR ERVK -332 279 1 7 1214 2729 163 14 10 chr12 82550470 82550961 -38706569 + MYSERV6-int LTR ERVK 2752 3244 -5715 7 1214 2079 227 12 197 chr12 82550966 82551713 -38705817 + RMER19C LTR ERVK 1 609 -2 7 1214 4934 172 71 26 chr12 82551715 82551813 -38705717 + MurERV4_19-int LTR ERVK 1 99 -5681 7 1214 3262 59 15 3 chr12 82551813 82552202 -38705328 - MTA_Mm LTR MaLR 0 396 3 7 1214 4934 172 71 26 chr12 82552202 82553036 -38704494 + MurERV4_19-int LTR ERVK 100 975 -4805 7 1214 4521 165 25 54 chr12 82553039 82553928 -38703602 + MurERV4_19-int LTR ERVK 2252 3114 -2666 7 1214 8983 107 28 16 chr12 82553929 82554368 -38703162 + Lx4A LINE L1 4291 4725 -1152 7 1214 396 0 0 0 chr12 82554368 82554412 -38703118 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1214 8983 107 28 16 chr12 82554412 82555352 -38702178 + Lx4A LINE L1 4726 5686 -191 7 1214 2610 147 2 45 chr12 82555352 82555795 -38701735 - RLTR26 LTR ERVK 0 642 219 7 1214 8288 128 12 38 chr12 82555795 82557089 -38700441 + Lx4A LINE L1 5797 7056 -2 7 1214 21 0 0 0 chr12 82557090 82557111 -38700419 + AT_rich Low_complexity Low_complexity 1 21 0 7 1214 841 290 91 15 chr12 82557210 82557539 -38699991 + Lx8 LINE L1 6980 7333 -140 7 1214 2219 139 94 44 chr12 82557657 82558155 -38699375 + MurERV4_19-int LTR ERVK 3130 3652 -2128 7 1214 2993 49 0 0 chr12 82558155 82558541 -38698989 + L1Md_F2 LINE L1 5201 5586 -297 8 1214 7334 74 9 12 chr12 82558542 82559537 -38697993 + L1Md_F2 LINE L1 5588 6579 -3 8 1214 9814 138 68 43 chr12 82559538 82559983 -38697547 + MurERV4_19-int LTR ERVK 3641 4074 -1706 7 1214 4433 50 14 16 chr12 82559983 82560548 -38696982 - LTRIS2 LTR ERV1 0 564 1 8 1214 9814 138 68 43 chr12 82560548 82561006 -38696524 + MurERV4_19-int LTR ERVK 4075 4578 -1202 7 1214 1765 179 32 78 chr12 82561006 82561418 -38696112 + RLTR9C LTR ERVK 1 393 0 8 1214 9814 138 68 43 chr12 82561418 82562305 -38695225 + MurERV4_19-int LTR ERVK 4579 5437 -343 7 1214 1208 72 0 6 chr12 82562305 82562473 -38695057 - L1Md_F2 LINE L1 -11 6571 6405 8 1214 9814 138 68 43 chr12 82562473 82562768 -38694762 + MurERV4_19-int LTR ERVK 5438 5780 0 7 1214 1686 222 41 181 chr12 82562768 82563479 -38694051 + RMER19C LTR ERVK 1 611 0 7 1214 28314 104 25 7 chr12 82563509 82569577 -38687953 - L1_Mus2 LINE L1 -1 6565 409 8 1214 1241 161 50 25 chr12 82569577 82569858 -38687672 + MYSERV6-int LTR ERVK 3245 3532 -5427 8 1214 3420 249 34 66 chr12 82570011 82571005 -38686525 + RMER1C Other Other 379 1340 -2 8 1214 2522 247 46 124 chr12 82571005 82571954 -38685576 + MTD-int LTR MaLR 380 1254 -4 8 1214 1452 228 150 3 chr12 82571963 82572324 -38685206 + MTD LTR MaLR 6 419 0 8 1214 288 0 0 0 chr12 82573000 82573032 -38684498 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1214 874 183 172 5 chr12 82574441 82574633 -38682897 - URR1B DNA MER1_type 0 225 2 8 1214 599 254 33 53 chr12 82574673 82574770 -38682760 - B1F SINE Alu -1 148 51 9 1214 2254 99 3 80 chr12 82574770 82575122 -38682408 - ORR1A2 LTR MaLR 0 327 3 9 1214 599 254 33 53 chr12 82575122 82575174 -38682356 - B1F SINE Alu -99 50 2 9 1215 209 213 0 0 chr12 82575673 82575720 -38681810 + T-rich Low_complexity Low_complexity 1 47 0 9 1215 3371 116 73 43 chr12 82575732 82576317 -38681213 + Lx2 LINE L1 6395 6997 0 9 1215 555 234 49 14 chr12 82576367 82576495 -38681035 + B1_Mur1 SINE Alu 1 135 -14 9 1215 216 0 0 0 chr12 82576495 82576519 -38681011 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1215 555 234 49 14 chr12 82576519 82576533 -38680997 + B1_Mur1 SINE Alu 136 148 -1 9 1215 208 318 124 30 chr12 82576642 82576843 -38680687 - MIR SINE MIR -36 226 7 9 1215 1224 54 0 0 chr12 82576951 82577098 -38680432 + B1_Mus2 SINE Alu 1 147 0 9 1215 1408 80 16 5 chr12 82577385 82577574 -38679956 + B2_Mm2 SINE B2 1 191 -4 9 1215 373 18 17 51 chr12 82577718 82577777 -38679753 + (TAAAA)n Simple_repeat Simple_repeat 1 57 0 9 1215 198 0 0 0 chr12 82577947 82577969 -38679561 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1215 1163 75 0 0 chr12 82578008 82578154 -38679376 + B1_Mus2 SINE Alu 2 147 0 1 1215 2016 134 75 6 chr12 82578236 82578567 -38678963 + ORR1B1 LTR MaLR 41 394 0 1 1215 21 57 0 0 chr12 82578794 82578829 -38678701 + AT_rich Low_complexity Low_complexity 1 35 0 1 1215 397 332 128 15 chr12 82578861 82579184 -38678346 + L1MEg2 LINE L1 643 1000 -5452 1 1215 2411 70 0 193 chr12 82579378 82579875 -38677655 + L1_Mus1 LINE L1 6167 6567 0 1 1215 384 111 48 5 chr12 82579886 82579961 -38677569 + L1_Mur2 LINE L1 5092 5173 -710 1 1215 290 264 0 0 chr12 82580434 82580506 -38677024 - ID4 SINE ID -10 73 2 1 1215 208 339 35 18 chr12 82581383 82581497 -38676033 + MIR SINE MIR 50 165 -97 1 1215 25 0 0 0 chr12 82581537 82581562 -38675968 + AT_rich Low_complexity Low_complexity 1 25 0 1 1215 742 221 41 10 chr12 82582138 82582335 -38675195 - Tigger7 DNA MER2_type -19 2472 2270 1 1215 237 65 0 0 chr12 82582362 82582393 -38675137 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1215 343 165 143 66 chr12 82582525 82582546 -38674984 - ID_B1 SINE B4 0 224 209 1 1215 1909 171 44 14 chr12 82582546 82582913 -38674617 + ORR1C1 LTR MaLR 1 378 0 1 1215 343 165 143 66 chr12 82582913 82582982 -38674548 - ID_B1 SINE B4 -16 208 127 1 1215 563 306 34 89 chr12 82583120 82583357 -38674173 + MER57D LTR ERV1 186 409 -2 1 1215 797 270 22 0 chr12 82583416 82583594 -38673936 - B3A SINE B2 -16 182 1 1 1215 195 100 0 0 chr12 82584010 82584040 -38673490 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1215 182 333 70 35 chr12 82584223 82584338 -38673192 + L2 LINE L2 365 483 -2936 1 1215 197 163 20 0 chr12 82584491 82584540 -38672990 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1215 267 189 0 0 chr12 82584764 82584817 -38672713 + (CG)n Simple_repeat Simple_repeat 1 53 0 1 1215 7535 108 28 39 chr12 82586363 82587583 -38669947 - Lx2 LINE L1 0 6997 5792 1 1215 227 343 106 28 chr12 82588602 82588686 -38668844 - MT2B2 LTR ERVL -270 314 166 1 1215 265 259 111 0 chr12 82588686 82588740 -38668790 - B1F1 SINE Alu -88 61 2 1 1215 1203 193 171 116 chr12 82589333 82589679 -38667851 + ORR1D1 LTR MaLR 10 374 0 1 1215 405 0 0 0 chr12 82589717 82589762 -38667768 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1215 391 298 56 6 chr12 82589832 82590011 -38667519 - MER5A DNA MER1_type -1 188 1 1 1215 2668 114 70 29 chr12 82590391 82590878 -38666652 - Lx4A LINE L1 -31 7027 6521 1 1215 626 286 130 43 chr12 82590879 82591226 -38666304 + MTEa LTR MaLR 3 379 0 1 1215 363 280 219 0 chr12 82591512 82591736 -38665794 - B4A SINE B4 -8 284 12 1 1215 186 43 0 0 chr12 82592335 82592358 -38665172 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1215 486 0 0 0 chr12 82592358 82592412 -38665118 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1215 579 265 37 0 chr12 82592429 82592565 -38664965 - RSINE1 SINE B4 -22 143 3 1 1215 204 337 111 63 chr12 82592574 82592764 -38664766 + MIRb SINE MIR 39 241 -27 1 1215 646 266 91 5 chr12 82592796 82593004 -38664526 + MIR SINE MIR 29 254 -8 1 1215 15585 110 4 20 chr12 82593406 82594161 -38663369 + L1VL4 LINE L1 134 878 -5424 1 1215 4099 146 88 22 chr12 82594161 82594920 -38662610 + RMER17D2 LTR ERVK 1 809 0 1 1215 15585 66 68 18 chr12 82594920 82597331 -38660199 + L1VL4 LINE L1 879 3412 -147 1 1215 2227 143 68 12 chr12 82597967 82598377 -38659153 + RLTR10C LTR ERVK 1 433 -3 1 1215 231 36 0 0 chr12 82598643 82598671 -38658859 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1215 1129 81 23 0 chr12 82598672 82598845 -38658685 + (GGGAGA)n Simple_repeat Simple_repeat 4 180 0 1 1215 399 266 13 0 chr12 82598852 82598931 -38658599 - PB1D9 SINE Alu -40 80 1 1 1215 189 276 88 50 chr12 82599547 82599627 -38657903 - MER5B DNA MER1_type -19 159 77 1 1215 275 245 161 54 chr12 82599675 82599787 -38657743 - MER5A DNA MER1_type 0 189 66 1 1215 197 341 47 0 chr12 82599866 82599951 -38657579 + MIRb SINE MIR 51 139 -129 1 1215 21 36 0 0 chr12 82601672 82601700 -38655830 + AT_rich Low_complexity Low_complexity 1 28 0 1 1215 207 0 0 0 chr12 82602441 82602464 -38655066 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1215 28 29 0 0 chr12 82602476 82602511 -38655019 + AT_rich Low_complexity Low_complexity 1 35 0 1 1215 21 0 0 0 chr12 82602607 82602628 -38654902 + AT_rich Low_complexity Low_complexity 1 21 0 1 1215 1119 66 0 0 chr12 82603792 82603929 -38653601 - B1_Mus2 SINE Alu -7 140 4 1 1215 3032 71 8 2 chr12 82604018 82604412 -38653118 + MTA_Mm LTR MaLR 1 396 0 1 1215 249 214 0 0 chr12 82604864 82604928 -38652602 + T-rich Low_complexity Low_complexity 7 70 0 1 1215 1044 151 0 0 chr12 82604928 82605107 -38652423 + CT-rich Low_complexity Low_complexity 2 180 0 1 1215 194 0 39 0 chr12 82605175 82605201 -38652329 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1215 258 56 0 0 chr12 82605204 82605240 -38652290 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1215 207 337 31 21 chr12 82606405 82606502 -38651028 - MIR SINE MIR -52 210 113 1 1215 6419 99 20 14 chr12 82607121 82608121 -38649409 - L1_Mus3 LINE L1 -1 6637 5632 1 1215 5318 121 17 13 chr12 82608114 82609320 -38648210 - L1VL2 LINE L1 -2333 1282 104 1 1215 856 219 22 17 chr12 82610086 82610267 -38647263 + B3 SINE B2 1 182 -34 1 1215 742 264 30 6 chr12 82610867 82611031 -38646499 + B3A SINE B2 1 168 -30 1 1215 366 23 0 0 chr12 82611040 82611083 -38646447 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1215 22 0 0 0 chr12 82611084 82611106 -38646424 + AT_rich Low_complexity Low_complexity 1 22 0 1 1215 211 283 57 66 chr12 82611558 82611664 -38645866 + MIRc SINE MIR 61 165 -103 1 1215 210 246 0 34 chr12 82611966 82612025 -38645505 + GA-rich Low_complexity Low_complexity 1 57 0 1 1215 422 62 0 45 chr12 82612405 82612472 -38645058 + (T)n Simple_repeat Simple_repeat 1 64 0 1 1215 1032 59 0 0 chr12 82612472 82612607 -38644923 - B1_Mus2 SINE Alu 0 147 13 1 1215 429 243 85 79 chr12 82612507 82612672 -38644858 - MT2B LTR ERVL -337 264 99 1 1215 249 226 0 0 chr12 82612923 82612985 -38644545 - L1MB1 LINE L1 -170 5998 5937 1 1215 351 182 76 55 chr12 82612988 82613133 -38644397 + L1MB1 LINE L1 6020 6167 -1 1 1215 1223 41 0 0 chr12 82613178 82613324 -38644206 - B1_Mm SINE Alu -1 146 1 1 1215 259 258 0 15 chr12 82613420 82613487 -38644043 + GA-rich Low_complexity Low_complexity 3 68 0 1 1215 236 289 92 0 chr12 82614534 82614610 -38642920 + ID2 SINE ID 1 83 0 1 1215 279 93 0 0 chr12 82614660 82614703 -38642827 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 1 1215 570 176 256 54 chr12 82615322 82615490 -38642040 + B3 SINE B2 4 205 -11 1 1215 1137 82 0 0 chr12 82615624 82615771 -38641759 + B1_Mus1 SINE Alu 2 148 0 1 1215 288 0 0 0 chr12 82615771 82615803 -38641727 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1215 1671 77 23 54 chr12 82616291 82616552 -38640978 + L1_Mus2 LINE L1 6314 6566 0 1 1215 21 0 0 0 chr12 82616814 82616835 -38640695 + AT_rich Low_complexity Low_complexity 1 21 0 1 1215 286 195 13 13 chr12 82616838 82616916 -38640614 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1215 437 200 56 0 chr12 82616930 82617020 -38640510 + B3 SINE B2 122 216 0 1 1215 260 265 9 34 chr12 82617176 82617284 -38640246 - MIRb SINE MIR -3 259 154 1 1215 896 243 101 20 chr12 82617304 82617661 -38639869 - Lx9 LINE L1 0 7644 7259 1 1215 634 254 5 51 chr12 82617655 82617850 -38639680 + Lx9 LINE L1 7033 7218 -426 1 1215 26 50 0 0 chr12 82618966 82619006 -38638524 + AT_rich Low_complexity Low_complexity 1 40 0 1 1215 192 77 0 0 chr12 82619065 82619091 -38638439 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1 1215 1089 211 56 35 chr12 82619260 82619599 -38637931 + RLTR15 LTR ERVK 1 346 -13 1 1215 582 275 21 0 chr12 82620700 82620842 -38636688 - B1_Mur1 SINE Alu -2 147 3 1 1215 231 61 0 0 chr12 82620861 82620894 -38636636 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1215 1077 293 75 85 chr12 82621062 82621812 -38635718 - RMER13A LTR ERVK -1 859 16 1 1215 828 81 59 33 chr12 82621930 82622083 -38635447 + L1_Mus4 LINE L1 6472 6628 -8 1 1215 5838 109 1 40 chr12 82622083 82623040 -38634490 + L1_Mus1 LINE L1 4382 5301 -582 1 1215 8450 18 0 0 chr12 82623040 82623996 -38633534 + L1Md_T LINE L1 5626 6581 -1 1 1215 637 97 0 19 chr12 82624025 82624130 -38633400 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 1 1215 219 36 0 0 chr12 82624130 82624158 -38633372 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 1 1215 2536 191 86 2 chr12 82624179 82624739 -38632791 - Lx7 LINE L1 -368 7328 6722 1 1215 249 33 0 0 chr12 82624824 82624854 -38632676 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1215 1217 55 0 0 chr12 82624861 82625007 -38632523 + B1_Mm SINE Alu 2 147 0 1 1215 5735 64 38 3 chr12 82625009 82625782 -38631748 + L1Md_F2 LINE L1 5783 6582 0 1 1215 7576 60 5 0 chr12 82625783 82627048 -38630482 + L1_Mus1 LINE L1 5295 6565 -2 1 1215 1131 250 113 21 chr12 82627444 82627771 -38629759 + MTEa LTR MaLR 1 357 -22 1 1215 1295 88 28 6 chr12 82628167 82628349 -38629181 - B2_Mm2 SINE B2 -8 187 2 1 1215 329 296 101 20 chr12 82628455 82628603 -38628927 + MIRb SINE MIR 7 166 -102 1 1215 894 81 2 0 chr12 82628615 82628740 -38628790 + B1_Mus2 SINE Alu 23 147 0 1 1215 697 243 103 0 chr12 82629218 82629403 -38628127 + B3 SINE B2 1 204 -12 1 1215 1131 261 88 97 chr12 82630064 82630599 -38626931 + MT2A LTR ERVL 1 530 -3 1 1215 26 0 0 0 chr12 82630608 82630634 -38626896 + AT_rich Low_complexity Low_complexity 1 26 0 2 1215 752 259 0 19 chr12 82631241 82631402 -38626128 + RSINE1 SINE B4 8 165 0 2 1215 922 211 171 33 chr12 82631536 82631809 -38625721 - MTD LTR MaLR -5 414 104 2 1215 1419 31 0 11 chr12 82631809 82631998 -38625532 + B2_Mm1t SINE B2 1 171 -22 2 1215 1277 20 0 0 chr12 82631998 82632144 -38625386 - B1_Mus2 SINE Alu 0 147 2 2 1215 1180 99 0 111 chr12 82632144 82632170 -38625360 + B2_Mm2 SINE B2 170 192 -3 2 1215 477 185 45 27 chr12 82632149 82632260 -38625270 - MTD LTR MaLR -285 134 22 2 1215 210 357 34 54 chr12 82632611 82632759 -38624771 - MIR SINE MIR -24 238 94 2 1215 468 0 0 0 chr12 82633274 82633326 -38624204 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1215 432 0 0 0 chr12 82634132 82634180 -38623350 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1215 432 173 18 18 chr12 82634400 82634512 -38623018 + C-rich Low_complexity Low_complexity 6 117 0 2 1215 1204 110 5 30 chr12 82635177 82635345 -38622185 + B2_Mm1a SINE B2 2 169 -24 2 1215 525 16 0 0 chr12 82635345 82635407 -38622123 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2 1215 1204 110 5 30 chr12 82635407 82635435 -38622095 + B2_Mm1a SINE B2 170 192 -1 2 1215 570 118 40 7 chr12 82635844 82635947 -38621583 + ORR1A4 LTR MaLR 1 148 -211 2 1215 588 246 91 0 chr12 82635951 82636144 -38621386 - L1_Mur3 LINE L1 -1551 4589 4382 2 1215 6542 138 34 8 chr12 82636168 82637223 -38620307 - Lx4A LINE L1 -3 7055 5974 2 1215 412 133 0 32 chr12 82637223 82637316 -38620214 + L1_Mur2 LINE L1 3772 3861 -2016 2 1215 1828 151 13 0 chr12 82637321 82637625 -38619905 + ORR1A3 LTR MaLR 11 318 -8 2 1215 4808 82 12 20 chr12 82637629 82638367 -38619163 + L1_Mur2 LINE L1 3863 4594 -1283 2 1215 624 244 74 80 chr12 82638367 82638706 -38618824 + MYSERV16_I-int LTR ERVK 598 934 -1392 2 1215 250 279 104 31 chr12 82638707 82638803 -38618727 + RMER4A LTR ERVK 326 428 -38 2 1215 5328 151 69 49 chr12 82638803 82639873 -38617657 + MYSERV16_I-int LTR ERVK 1033 2149 -177 2 1215 1178 68 0 0 chr12 82639873 82640019 -38617511 + B1_Mm SINE Alu 2 147 0 2 1215 5328 151 69 49 chr12 82640019 82640216 -38617314 + MYSERV16_I-int LTR ERVK 2150 2326 0 2 1215 1810 122 10 19 chr12 82640216 82640525 -38617005 + BGLII_B LTR ERVK 4 309 -132 2 1215 1321 283 196 28 chr12 82640621 82641691 -38615839 - L1_Mur3 LINE L1 -2285 3595 2346 2 1215 819 160 34 20 chr12 82641700 82641847 -38615683 + B1_Mur2 SINE Alu 1 149 0 2 1215 340 307 77 97 chr12 82641905 82641970 -38615560 - B3A SINE B2 -2 196 7 2 1215 697 248 0 0 chr12 82641970 82642099 -38615431 - RSINE1 SINE B4 -29 136 8 2 1215 1173 62 0 0 chr12 82642128 82642273 -38615257 + B1_Mus2 SINE Alu 3 147 0 2 1215 298 143 17 51 chr12 82642476 82642535 -38614995 - MLT2B4 LTR ERVL 0 556 500 2 1215 990 223 122 5 chr12 82642590 82642811 -38614719 - MERVL_2A-int LTR ERVL -1387 4280 4034 2 1215 266 191 0 0 chr12 82642816 82642858 -38614672 + B1_Mur2 SINE Alu 74 115 -34 2 1215 293 131 2 6 chr12 82642858 82642922 -38614608 - MERVL_2A-int LTR ERVL -1587 4174 4131 2 1215 622 305 98 0 chr12 82642954 82643053 -38614477 - B3 SINE B2 -25 191 79 2 1215 1204 79 61 17 chr12 82643053 82643233 -38614297 + B2_Mm2 SINE B2 2 189 -6 2 1215 1244 48 0 0 chr12 82643238 82643385 -38614145 + B1_Mus2 SINE Alu 1 147 0 2 1215 622 305 98 0 chr12 82643385 82643453 -38614077 - B3 SINE B2 -146 70 3 2 1215 2011 255 52 7 chr12 82643453 82644046 -38613484 - MERVL_2A-int LTR ERVL -1634 4127 3508 2 1215 1002 282 81 41 chr12 82644053 82644397 -38613133 - ORR1D2 LTR MaLR -8 362 5 2 1215 761 354 50 29 chr12 82644594 82645018 -38612512 - MT2A LTR ERVL 0 563 75 2 1215 303 296 116 31 chr12 82644953 82645082 -38612448 - MTE2a LTR MaLR -239 140 1 2 1215 641 302 97 47 chr12 82645116 82645891 -38611639 - L1_Rod LINE L1 -3785 2062 1249 2 1215 837 95 0 17 chr12 82646607 82646725 -38610805 + B2_Mm2 SINE B2 1 116 -79 2 1215 1703 68 8 0 chr12 82646736 82646985 -38610545 + L1_Mur1 LINE L1 3144 3394 -2492 2 1215 1003 218 83 134 chr12 82647146 82647533 -38609997 + MTE2a LTR MaLR 13 379 0 2 1215 189 0 39 0 chr12 82647602 82647628 -38609902 - L2 LINE L2 -524 2895 2869 2 1215 1934 168 18 39 chr12 82647946 82648397 -38609133 + RMER17C LTR ERVK 16 441 -517 2 1215 694 269 29 4 chr12 82648617 82648856 -38608674 - L1M2a LINE L1 -4966 2202 1958 2 1215 2718 74 0 3 chr12 82648926 82649318 -38608212 + MusHAL1 LINE L1 328 718 -1994 2 1215 1026 65 58 0 chr12 82649793 82649947 -38607583 + L1_Mus3 LINE L1 6470 6632 -6 2 1215 528 16 0 0 chr12 82649950 82650011 -38607519 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1215 632 320 74 21 chr12 82650051 82650335 -38607195 - MLT1B LTR MaLR -66 324 26 2 1215 29759 66 0 8 chr12 82651117 82656134 -38601396 + L1Md_Gf LINE L1 309 5384 -502 2 1215 616 291 89 30 chr12 82656134 82656403 -38601127 + MTE-int LTR MaLR 1264 1548 -32 2 1215 230 197 0 112 chr12 82656578 82656658 -38600872 + CT-rich Low_complexity Low_complexity 4 74 0 2 1215 294 143 0 0 chr12 82656785 82656834 -38600696 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 2 1215 446 358 93 71 chr12 82656853 82657175 -38600355 - LTR16E1 LTR ERVL -23 515 187 2 1215 533 159 0 4 chr12 82657759 82657854 -38599676 - B1_Mur4 SINE Alu -14 106 14 2 1215 239 89 0 62 chr12 82658831 82658879 -38598651 + T-rich Low_complexity Low_complexity 1 45 0 2 1215 1174 88 0 0 chr12 82658879 82659027 -38598503 - B1_Mus1 SINE Alu 0 148 1 2 1215 340 23 0 0 chr12 82662504 82662547 -38594983 - B1_Mus2 SINE Alu -7 140 98 2 1215 297 122 0 0 chr12 82662634 82662678 -38594852 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 2 1215 188 67 33 0 chr12 82662678 82662708 -38594822 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1215 254 0 83 0 chr12 82662754 82662790 -38594740 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1215 1150 75 7 0 chr12 82662799 82662945 -38594585 - B1_Mus1 SINE Alu 0 148 2 2 1215 214 317 0 0 chr12 82663208 82663268 -38594262 - B4A SINE B4 -152 140 81 2 1215 234 278 0 0 chr12 82663438 82663492 -38594038 + GA-rich Low_complexity Low_complexity 1 54 0 2 1215 229 119 60 0 chr12 82663877 82663944 -38593586 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 2 1215 321 311 16 32 chr12 82664389 82664515 -38593015 + MTE2a LTR MaLR 256 379 0 2 1215 787 156 28 0 chr12 82665045 82665186 -38592344 - B1_Mur3 SINE Alu 0 149 5 2 1215 216 97 0 0 chr12 82665193 82665224 -38592306 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1215 1153 37 0 0 chr12 82665603 82665737 -38591793 + B1_Mm SINE Alu 5 138 -9 2 1215 10772 89 16 1 chr12 82666030 82668117 -38589413 + L1Md_F LINE L1 586 2705 -3178 2 1215 2028 76 15 0 chr12 82668132 82668423 -38589107 + L1_Mus1 LINE L1 6296 6567 0 2 1215 406 279 28 35 chr12 82668582 82668727 -38588803 - RSINE1 SINE B4 -19 146 3 2 1215 360 224 0 0 chr12 82669309 82669376 -38588154 + BC1_Mm scRNA scRNA 6 72 -80 2 1215 189 0 0 0 chr12 82669376 82669397 -38588133 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2 1215 319 245 106 19 chr12 82669866 82669970 -38587560 + B1F SINE Alu 31 143 -6 2 1215 952 270 16 87 chr12 82670016 82670248 -38587282 + B4A SINE B4 3 211 -81 2 1215 1285 184 19 0 chr12 82670248 82670460 -38587070 + B3 SINE B2 1 216 0 2 1215 952 270 16 87 chr12 82670460 82670536 -38586994 + B4A SINE B4 212 289 -3 2 1215 24 85 0 0 chr12 82670639 82670698 -38586832 + AT_rich Low_complexity Low_complexity 1 59 0 2 1215 1064 43 0 0 chr12 82671350 82671489 -38586041 - B1_Mus1 SINE Alu 0 148 10 2 1215 901 234 90 20 chr12 82671905 82672149 -38585381 + Lx5 LINE L1 6784 7044 -6 2 1215 2266 114 40 60 chr12 82672228 82672422 -38585108 + RLTR13D3 LTR ERVK 1 180 -934 2 1215 1251 48 0 0 chr12 82672422 82672569 -38584961 - B1_Mm SINE Alu 0 147 1 2 1215 2266 114 40 60 chr12 82672569 82672774 -38584756 + RLTR13D3 LTR ERVK 181 392 -722 2 1215 453 119 0 0 chr12 82672774 82672841 -38584689 + B1_Mus2 SINE Alu 1 67 -80 2 1215 373 253 334 27 chr12 82673209 82673289 -38584241 + L1MC4 LINE L1 6586 6677 -1365 2 1215 324 0 0 0 chr12 82673289 82673325 -38584205 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1215 373 253 334 27 chr12 82673325 82673771 -38583759 + L1MC4 LINE L1 6678 7274 -768 2 1215 571 331 56 42 chr12 82673788 82674075 -38583455 + B4A SINE B4 2 292 0 2 1215 23 33 0 0 chr12 82675123 82675153 -38582377 + AT_rich Low_complexity Low_complexity 1 30 0 2 1215 1172 48 0 13 chr12 82675752 82675901 -38581629 + B1_Mm SINE Alu 1 147 0 2 1215 189 139 0 0 chr12 82675901 82675944 -38581586 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1215 488 153 0 23 chr12 82676098 82676185 -38581345 + B1_Mur2 SINE Alu 24 108 -41 2 1215 894 236 80 0 chr12 82676243 82676442 -38581088 - B3 SINE B2 0 216 2 2 1215 1226 48 0 0 chr12 82676484 82676631 -38580899 - B1_Mus1 SINE Alu 0 148 2 2 1215 574 253 27 141 chr12 82676631 82676816 -38580714 + B3A SINE B2 32 195 0 2 1215 259 214 0 18 chr12 82676854 82676911 -38580619 + RSINE1 SINE B4 2 57 -108 2 1215 681 53 0 0 chr12 82676969 82677063 -38580467 + (TC)n Simple_repeat Simple_repeat 1 94 0 2 1215 474 33 0 0 chr12 82677063 82677122 -38580408 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1215 667 237 13 0 chr12 82677439 82677591 -38579939 - B3 SINE B2 -62 154 1 2 1215 274 150 33 16 chr12 82677792 82677853 -38579677 + MER68 LTR ERVL 1 62 -501 2 1215 299 271 47 47 chr12 82677855 82677983 -38579547 + B1F1 SINE Alu 6 133 -16 2 1215 221 277 34 67 chr12 82678013 82678102 -38579428 + RSINE1 SINE B4 3 88 -77 2 1215 570 29 0 0 chr12 82678198 82678266 -38579264 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 2 1215 749 262 81 15 chr12 82678358 82678618 -38578912 + MER68 LTR ERVL 46 322 -241 2 1215 220 279 16 0 chr12 82678665 82678680 -38578850 + polypurine Low_complexity Low_complexity 3 17 0 2 1215 1183 61 0 0 chr12 82678680 82678827 -38578703 + B1_Mm SINE Alu 1 147 0 2 1215 220 279 16 0 chr12 82678827 82678872 -38578658 + polypurine Low_complexity Low_complexity 18 63 0 2 1215 1115 234 0 0 chr12 82678959 82679160 -38578370 - B3 SINE B2 -14 202 2 2 1215 25 0 0 0 chr12 82679713 82679738 -38577792 + AT_rich Low_complexity Low_complexity 1 25 0 2 1215 901 201 147 0 chr12 82679760 82679944 -38577586 - B3 SINE B2 -4 212 2 3 1215 704 263 20 25 chr12 82679973 82680172 -38577358 - B3A SINE B2 0 198 1 3 1215 1115 76 7 0 chr12 82680880 82681025 -38576505 - B1_Mus1 SINE Alu 0 148 3 3 1215 352 244 11 34 chr12 82681202 82681291 -38576239 + ID_B1 SINE B4 130 216 -8 3 1215 331 254 6 42 chr12 82681301 82681411 -38576119 + PB1D10 SINE Alu 1 110 -10 3 1215 1304 71 71 6 chr12 82681615 82681798 -38575732 - B2_Mm2 SINE B2 0 195 1 3 1215 437 304 25 31 chr12 82682074 82682237 -38575293 + RSINE1 SINE B4 3 164 -1 3 1215 214 333 83 0 chr12 82682290 82682374 -38575156 + ID_B1 SINE B4 5 95 -129 3 1215 487 273 167 31 chr12 82683028 82683255 -38574275 - MER2 DNA MER2_type -1 344 87 3 1215 276 245 0 0 chr12 82683484 82683537 -38573993 + ID_B1 SINE B4 105 157 -67 3 1215 3245 8 0 44 chr12 82684081 82684465 -38573065 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1215 4462 64 74 19 chr12 82684465 82685086 -38572444 + IAPEz-int LTR ERVK 8 662 -5819 3 1215 454 66 0 32 chr12 82685086 82685149 -38572381 + IAPEz-int LTR ERVK 1359 1419 -5062 3 1215 1793 123 4 15 chr12 82685138 82685403 -38572127 + IAPEz-int LTR ERVK 2236 2497 -5183 3 1215 936 88 24 0 chr12 82685398 82685523 -38572007 + IAPEz-int LTR ERVK 4783 4910 -2770 3 1215 26769 17 1 2 chr12 82685523 82688482 -38569048 + IAPEz-int LTR ERVK 3525 6481 0 3 1215 27 0 0 0 chr12 82688996 82689023 -38568507 + AT_rich Low_complexity Low_complexity 1 27 0 3 1215 1204 22 0 0 chr12 82689037 82689174 -38568356 - B1_Mm SINE Alu -9 138 2 3 1215 237 253 107 60 chr12 82689344 82689428 -38568102 + MER68 LTR ERVL 177 264 -299 3 1215 304 75 24 59 chr12 82689433 82689518 -38568012 + A-rich Low_complexity Low_complexity 4 85 0 3 1215 333 0 0 0 chr12 82689550 82689587 -38567943 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 3 1215 294 29 0 0 chr12 82689587 82689622 -38567908 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1215 407 85 14 0 chr12 82691350 82691415 -38566115 - B2_Mm2 SINE B2 -82 116 46 3 1215 953 101 129 25 chr12 82691442 82691605 -38565925 - B2_Mm2 SINE B2 -14 181 2 3 1215 424 202 42 63 chr12 82691608 82691798 -38565732 - Lx9 LINE L1 -2 7642 7457 3 1215 870 198 85 0 chr12 82691822 82692034 -38565496 - Lx9 LINE L1 -131 7513 7284 3 1215 484 163 16 39 chr12 82692707 82692835 -38564695 + Lx4A LINE L1 6934 7058 0 3 1215 24 0 0 0 chr12 82692835 82692859 -38564671 + AT_rich Low_complexity Low_complexity 1 24 0 3 1215 814 159 22 0 chr12 82692907 82693045 -38564485 + B1_Mur4 SINE Alu 6 146 -4 3 1215 1000 75 0 0 chr12 82693119 82693253 -38564277 + B1_Mus1 SINE Alu 15 148 0 3 1215 360 64 0 0 chr12 82693253 82693300 -38564230 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1215 333 283 28 19 chr12 82693495 82693603 -38563927 + PB1D10 SINE Alu 3 111 -6 3 1215 919 71 87 0 chr12 82693900 82694026 -38563504 + B1_Mus2 SINE Alu 5 141 -6 3 1215 207 0 0 0 chr12 82694028 82694051 -38563479 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1215 222 37 0 0 chr12 82694100 82694127 -38563403 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1215 1247 103 32 5 chr12 82694538 82694724 -38562806 - B2_Mm2 SINE B2 -4 191 1 3 1215 22 0 0 0 chr12 82695565 82695587 -38561943 + AT_rich Low_complexity Low_complexity 1 22 0 3 1215 327 286 31 0 chr12 82696471 82696569 -38560961 + PB1D7 SINE Alu 14 114 -6 3 1215 561 33 484 0 chr12 82696780 82696871 -38560659 + B1_Mm SINE Alu 1 135 -12 3 1215 681 24 0 0 chr12 82696872 82696955 -38560575 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 3 1215 405 0 0 0 chr12 82697355 82697400 -38560130 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1215 673 178 80 58 chr12 82697405 82697542 -38559988 - B1_Mur3 SINE Alu -7 142 3 3 1215 5828 141 150 67 chr12 82697913 82698806 -38558724 + RLTR21 LTR ERVK 28 885 -687 3 1215 1426 98 0 5 chr12 82698806 82699000 -38558530 - B2_Mm2 SINE B2 -2 193 1 3 1215 5828 141 150 67 chr12 82699000 82699055 -38558475 + RLTR21 LTR ERVK 886 919 -653 3 1215 950 32 186 0 chr12 82699055 82699179 -38558351 - B1_Mm SINE Alu 0 147 1 3 1215 5828 141 150 67 chr12 82699179 82699508 -38558022 + RLTR21 LTR ERVK 920 1391 -181 3 1215 399 89 0 0 chr12 82699508 82699564 -38557966 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1215 5828 141 150 67 chr12 82699564 82699711 -38557819 + RLTR21 LTR ERVK 1392 1571 -1 3 1215 1430 99 0 5 chr12 82700481 82700673 -38556857 - B2_Mm2 SINE B2 -3 192 2 3 1215 276 267 27 0 chr12 82701419 82701494 -38556036 + ID4_ SINE ID 7 83 0 3 1215 921 162 0 0 chr12 82701499 82701641 -38555889 + B1F2 SINE Alu 1 142 -7 3 1215 228 300 50 10 chr12 82701947 82702048 -38555482 - L1_Mur3 LINE L1 -2881 2999 2895 3 1215 742 122 0 91 chr12 82702313 82702511 -38555019 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1215 1171 267 16 52 chr12 82703593 82703940 -38553590 + MTEb-int LTR MaLR 1227 1567 -13 3 1215 2850 98 69 29 chr12 82703940 82704360 -38553170 - RLTR9B LTR ERVK 0 437 1 3 1215 1171 267 16 52 chr12 82704360 82704379 -38553151 + MTEb-int LTR MaLR 1568 1580 0 3 1215 1106 277 22 36 chr12 82704379 82704739 -38552791 + MTEb LTR MaLR 20 374 -5 3 1215 385 306 30 43 chr12 82704893 82705057 -38552473 + RSINE1 SINE B4 2 163 -2 3 1215 31 0 0 0 chr12 82705068 82705099 -38552431 + AT_rich Low_complexity Low_complexity 1 31 0 3 1215 284 317 67 9 chr12 82706051 82706156 -38551374 + ORR1E LTR MaLR 1 111 -248 3 1215 271 284 61 114 chr12 82706219 82706350 -38551180 + ORR1E LTR MaLR 240 363 -16 3 151 683 322 120 17 chr12 82706425 82706832 -38550698 - MER76 LTR ERVL -35 656 208 3 1216 413 189 43 62 chr12 82706847 82707043 -38550487 - RLTR40 LTR ERVK -75 742 498 3 1216 342 0 0 0 chr12 82707056 82707094 -38550436 + (TTA)n Simple_repeat Simple_repeat 1 38 0 3 1216 734 161 40 0 chr12 82707095 82707219 -38550311 - B1_Mur4 SINE Alu -5 145 17 3 1216 501 212 0 0 chr12 82707226 82707339 -38550191 + (CATATA)n Simple_repeat Simple_repeat 2 114 0 3 1216 181 357 45 0 chr12 82707661 82707773 -38549757 + L2c LINE L2 2699 2815 -604 3 1216 458 227 0 0 chr12 82707937 82708025 -38549505 + PB1D10 SINE Alu 3 90 -27 3 1216 1125 237 132 7 chr12 82708926 82709236 -38548294 + ORR1E LTR MaLR 1 349 -10 3 1216 1998 167 49 16 chr12 82709298 82709664 -38547866 - ORR1C1 LTR MaLR 0 378 1 3 1216 643 127 9 9 chr12 82709664 82709775 -38547755 - ORR1C1-int LTR MaLR 0 1509 1399 3 1216 1202 55 0 0 chr12 82709785 82709931 -38547599 + B1_Mus2 SINE Alu 2 147 0 3 1216 189 107 0 0 chr12 82709931 82709959 -38547571 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1216 180 364 21 88 chr12 82710470 82710663 -38546867 + L2c LINE L2 3039 3218 -169 3 1216 3120 142 15 25 chr12 82710677 82711206 -38546324 - RLTR12B LTR ERVK -4 524 1 3 1216 394 310 0 0 chr12 82711405 82711521 -38546009 - PB1D10 SINE Alu -1 116 1 3 1216 230 269 0 175 chr12 82711570 82711696 -38545834 + ID_B1 SINE B4 54 157 -67 3 1216 305 304 0 12 chr12 82711808 82711888 -38545642 + (CACG)n Simple_repeat Simple_repeat 4 82 0 3 1216 1136 195 106 33 chr12 82712163 82712492 -38545038 + RLTR10D LTR ERVK 7 359 0 3 1216 323 311 29 53 chr12 82713153 82713323 -38544207 + L1MB8 LINE L1 5896 6061 -117 3 1216 1932 131 77 6 chr12 82713424 82713543 -38543987 + RMER6A LTR ERVK 369 489 -267 3 1216 756 107 0 0 chr12 82713543 82713655 -38543875 + (GA)n Simple_repeat Simple_repeat 1 112 0 3 1216 1932 131 77 6 chr12 82713655 82713897 -38543633 + RMER6A LTR ERVK 490 755 -1 3 1216 3327 52 0 2 chr12 82714480 82714881 -38542649 + MTB LTR MaLR 1 400 0 3 1216 885 200 28 0 chr12 82715370 82715550 -38541980 + B3A SINE B2 8 192 -6 3 1216 438 246 61 0 chr12 82715744 82715858 -38541672 + MLT1A1 LTR MaLR 287 407 -1 3 1216 1256 294 146 85 chr12 82715859 82716316 -38541214 + MLT1A1-int LTR MaLR 1 492 -1243 3 1216 529 14 29 0 chr12 82716316 82716386 -38541144 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1216 1256 294 146 85 chr12 82716386 82716881 -38540649 + MLT1A1-int LTR MaLR 493 1011 -724 3 1216 1638 275 61 6 chr12 82716914 82717422 -38540108 + MLT1A1-int LTR MaLR 1171 1706 -29 3 1216 254 209 75 0 chr12 82717458 82717525 -38540005 + MLT1A1 LTR MaLR 25 96 -312 3 1216 415 288 30 18 chr12 82718073 82718323 -38539207 + RMER15 LTR ERVL 260 539 -36 3 1216 460 245 155 7 chr12 82718343 82718491 -38539039 + B4A SINE B4 105 274 -18 3 1216 1115 155 81 19 chr12 82719038 82719248 -38538282 + URR1B DNA MER1_type 1 223 -2 3 1216 1192 48 0 7 chr12 82720792 82720939 -38536591 + B1_Mus2 SINE Alu 2 147 0 3 1216 382 277 50 0 chr12 82720983 82721102 -38536428 + B1F SINE Alu 24 148 -1 3 1216 790 158 1 0 chr12 82721305 82721449 -38536081 + B1_Mur4 SINE Alu 5 150 0 3 1216 339 271 86 35 chr12 82721688 82721944 -38535586 + L1M4c LINE L1 2009 2277 -4107 3 1216 278 279 65 7 chr12 82722136 82722291 -38535239 + L1M4c LINE L1 3547 3710 -2666 3 1216 274 321 36 45 chr12 82722530 82722562 -38534968 + B4 SINE B4 58 88 -204 3 1216 338 283 54 0 chr12 82722562 82722654 -38534876 + PB1D9 SINE Alu 1 97 -23 3 1216 393 198 58 68 chr12 82722657 82722722 -38534808 + MTE2a LTR MaLR 278 342 -37 3 1216 2150 151 21 50 chr12 82722722 82723099 -38534431 + ORR1B2 LTR MaLR 2 367 0 3 1216 393 198 58 68 chr12 82723099 82723136 -38534394 + MTE2a LTR MaLR 343 379 0 3 1216 243 255 20 0 chr12 82723310 82723361 -38534169 + ID4 SINE ID 2 53 -30 3 1216 234 0 0 0 chr12 82723535 82723561 -38533969 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1216 198 179 0 0 chr12 82723638 82723694 -38533836 + A-rich Low_complexity Low_complexity 1 56 0 3 1216 32 57 0 0 chr12 82723870 82723923 -38533607 + AT_rich Low_complexity Low_complexity 1 53 0 3 1216 1388 59 32 0 chr12 82723959 82724145 -38533385 - B2_Mm1a SINE B2 -1 192 1 3 1216 277 274 141 19 chr12 82724410 82724566 -38532964 - LTR33 LTR ERVL -293 222 48 3 1216 1670 203 23 82 chr12 82724580 82724971 -38532559 + MTE2b LTR MaLR 1 368 -11 3 1216 441 0 0 0 chr12 82725913 82725962 -38531568 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1216 766 222 81 54 chr12 82728007 82728193 -38529337 - B4A SINE B4 0 292 102 3 1216 240 349 103 19 chr12 82728534 82728689 -38528841 - MIRb SINE MIR -82 186 19 3 1216 578 304 0 0 chr12 82729088 82729223 -38528307 - B1F SINE Alu -14 135 1 3 1216 552 296 29 39 chr12 82729299 82729503 -38528027 + B4A SINE B4 91 292 0 3 1216 402 222 0 0 chr12 82729594 82729666 -38527864 + ID2 SINE ID 2 73 -10 3 1216 264 278 48 102 chr12 82729750 82729868 -38527662 + MIR SINE MIR 8 117 -145 3 1216 1972 167 58 25 chr12 82729871 82730234 -38527296 + ORR1B1 LTR MaLR 12 386 -8 3 1216 346 304 86 9 chr12 82730248 82730364 -38527166 + MIRb SINE MIR 144 268 0 3 1216 284 300 57 14 chr12 82730495 82730624 -38526906 + ID4 SINE ID 6 135 -17 4 1216 344 218 115 26 chr12 82730791 82730904 -38526626 - MER5A1 DNA MER1_type -42 124 2 4 1216 438 298 38 0 chr12 82730944 82731075 -38526455 - MER5A DNA MER1_type -51 138 3 4 1216 245 256 0 82 chr12 82732138 82732236 -38525294 + G-rich Low_complexity Low_complexity 6 95 0 4 1216 423 0 0 0 chr12 82733514 82733561 -38523969 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1216 796 169 49 0 chr12 82734606 82734748 -38522782 - B1_Mur1 SINE Alu 0 149 1 4 1216 901 130 0 0 chr12 82735354 82735485 -38522045 + B1_Mus2 SINE Alu 16 146 -1 4 1216 216 86 0 0 chr12 82735486 82735521 -38522009 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 4 1216 189 107 0 0 chr12 82735607 82735635 -38521895 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1216 1047 142 0 0 chr12 82735772 82735920 -38521610 + B1_Mur3 SINE Alu 2 149 0 4 1216 1649 196 83 81 chr12 82737163 82737573 -38519957 + MTD LTR MaLR 9 419 0 4 1216 305 295 34 11 chr12 82737574 82737663 -38519867 - MER45B DNA Tip100 -23 1017 927 4 1216 429 220 16 122 chr12 82737662 82737837 -38519693 + B1F1 SINE Alu 13 142 -7 4 1216 2214 268 114 22 chr12 82737929 82738731 -38518799 - MER45B DNA Tip100 -124 916 2 4 1216 3891 31 7 4 chr12 82739196 82739653 -38517877 + L1Md_F3 LINE L1 6113 6570 -14 4 1216 846 244 49 5 chr12 82740117 82740302 -38517228 + B3A SINE B2 6 198 0 4 1216 1151 56 28 0 chr12 82740819 82740961 -38516569 - B1_Mm SINE Alu -1 146 1 4 1216 198 292 115 41 chr12 82741302 82741426 -38516104 - MIRb SINE MIR -127 141 5 4 1216 472 314 140 30 chr12 82741683 82742012 -38515518 - ORR1D2 LTR MaLR 0 370 6 4 1216 307 328 53 24 chr12 82742307 82742466 -38515064 + MIR3 SINE MIR 30 185 -23 4 1216 384 22 0 0 chr12 82743358 82743403 -38514127 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1216 194 211 53 0 chr12 82744349 82744387 -38513143 + MIRm SINE MIR 220 259 -17 4 1216 800 294 31 31 chr12 82744772 82745063 -38512467 + B4A SINE B4 1 291 -1 4 1216 1352 86 0 0 chr12 82746089 82746264 -38511266 + B2_Mm2 SINE B2 2 176 -19 4 1216 1020 206 40 5 chr12 82746946 82747184 -38510346 - ORR1B1 LTR MaLR 0 394 122 4 1216 959 278 73 23 chr12 82747751 82748053 -38509477 - MER2 DNA MER2_type -21 324 8 4 1216 730 201 0 34 chr12 82748721 82748870 -38508660 + Lx8 LINE L1 7186 7329 -144 4 1216 263 232 0 0 chr12 82748891 82748947 -38508583 + Lx8 LINE L1 7416 7471 -2 4 1216 631 247 88 0 chr12 82749634 82749804 -38507726 + L1MD2 LINE L1 5734 5918 -441 4 1216 313 277 108 8 chr12 82749836 82749956 -38507574 - B1F SINE Alu 0 149 18 4 1216 315 274 96 17 chr12 82749964 82750079 -38507451 + L1MD2 LINE L1 5923 6046 -196 4 1216 391 266 60 42 chr12 82750086 82750274 -38507256 + MIR SINE MIR 28 219 -49 4 1216 641 256 112 6 chr12 82750633 82750802 -38506728 + B3A SINE B2 1 187 -11 4 1216 304 284 146 10 chr12 82750828 82750924 -38506606 + PB1 SINE Alu 16 124 -3 4 1216 3910 225 47 16 chr12 82750943 82751381 -38506149 + Lx8 LINE L1 5462 5913 -1560 4 1216 414 0 0 0 chr12 82751381 82751427 -38506103 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1216 3910 288 55 34 chr12 82751427 82751511 -38506019 + Lx8 LINE L1 5914 5987 -1486 4 1216 1214 95 6 0 chr12 82751511 82751690 -38505840 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1216 3910 288 55 34 chr12 82751690 82752036 -38505494 + Lx8 LINE L1 5988 6341 -1132 4 1216 2642 147 110 35 chr12 82752036 82752580 -38504950 - RMER4B LTR ERVK 0 585 1 4 1216 3910 288 55 34 chr12 82752580 82753211 -38504319 + Lx8 LINE L1 6342 6996 -477 4 1216 459 303 56 99 chr12 82753329 82753633 -38503897 - MLT1B LTR MaLR -12 378 88 4 1216 1636 249 78 43 chr12 82753647 82754187 -38503343 - Lx9 LINE L1 -77 7567 7009 4 1216 212 149 43 0 chr12 82754218 82754265 -38503265 + T-rich Low_complexity Low_complexity 1 49 0 4 1216 274 260 110 0 chr12 82754272 82754345 -38503185 - MLT1B LTR MaLR -381 86 6 4 1216 252 0 0 0 chr12 82754900 82754928 -38502602 + (CCA)n Simple_repeat Simple_repeat 1 28 0 4 1216 868 153 12 0 chr12 82755266 82755436 -38502094 + GA-rich Low_complexity Low_complexity 3 174 0 4 1216 441 0 0 0 chr12 82755563 82755612 -38501918 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1216 278 138 17 0 chr12 82755612 82755670 -38501860 + GA-rich Low_complexity Low_complexity 2 60 0 4 1216 405 330 108 93 chr12 82756490 82756694 -38500836 + MER20 DNA MER1_type 1 207 -12 4 1216 408 318 66 0 chr12 82757136 82757287 -38500243 + MIR SINE MIR 28 188 -74 4 1216 625 257 84 47 chr12 82757352 82757626 -38499904 + B4A SINE B4 1 284 -8 4 1216 3161 106 38 13 chr12 82757678 82758147 -38499383 - Lx2 LINE L1 0 6997 6517 4 1216 309 26 0 0 chr12 82758161 82758199 -38499331 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1216 216 219 30 30 chr12 82758654 82758720 -38498810 - BC1_Mm scRNA scRNA -47 105 40 4 1216 1199 56 0 0 chr12 82759412 82759556 -38497974 + B1_Mm SINE Alu 2 145 -2 4 1216 205 182 0 0 chr12 82759557 82759601 -38497929 + A-rich Low_complexity Low_complexity 1 44 0 4 1216 409 254 35 26 chr12 82759617 82759730 -38497800 + B1F2 SINE Alu 5 118 -31 4 1216 188 205 0 71 chr12 82760186 82760228 -38497302 + L3 LINE CR1 740 778 -3711 4 1216 505 314 39 43 chr12 82760500 82760733 -38496797 + MIRb SINE MIR 35 266 -2 4 1216 989 258 77 96 chr12 82760753 82761220 -38496310 - MLT1C LTR MaLR -9 458 1 4 1216 443 175 25 0 chr12 82762339 82762419 -38495111 + PB1 SINE Alu 21 102 -25 4 1216 315 0 0 0 chr12 82762467 82762502 -38495028 + (TTTCC)n Simple_repeat Simple_repeat 1 35 0 4 1216 514 133 20 10 chr12 82762503 82762602 -38494928 + CT-rich Low_complexity Low_complexity 1 100 0 4 1216 359 262 75 0 chr12 82762602 82762709 -38494821 - PB1D10 SINE Alu -1 116 2 4 1216 214 205 0 0 chr12 82763079 82763118 -38494412 - L2b LINE L2 -7 3368 3330 4 1216 512 229 137 0 chr12 82763567 82763698 -38493832 - B1_Mur2 SINE Alu 0 149 1 4 1216 203 360 109 7 chr12 82763698 82763835 -38493695 + MIRb SINE MIR 96 246 -22 4 1216 439 292 15 4 chr12 82763835 82763957 -38493573 + PB1 SINE Alu 13 99 -28 4 1216 1130 95 0 0 chr12 82763957 82764105 -38493425 - B1_Mus1 SINE Alu 0 148 1 4 1216 329 360 54 13 chr12 82764105 82764131 -38493399 + FAM SINE Alu 277 302 -9 4 1216 28 0 0 0 chr12 82765900 82765928 -38491602 + AT_rich Low_complexity Low_complexity 1 28 0 4 1216 289 350 128 20 chr12 82765956 82766160 -38491370 - MIRb SINE MIR -42 226 1 4 1216 206 105 53 0 chr12 82767546 82767584 -38489946 + T-rich Low_complexity Low_complexity 3 42 0 4 1216 926 259 111 52 chr12 82767982 82768442 -38489088 - L1M5 LINE L1 -383 5741 5255 4 1216 755 143 0 32 chr12 82768967 82769090 -38488440 - B1_Mus1 SINE Alu -28 120 2 4 1216 255 262 33 0 chr12 82769377 82769438 -38488092 + MER5A1 DNA MER1_type 43 105 -61 4 1216 1111 63 35 0 chr12 82769696 82769838 -38487692 + B1_Mus1 SINE Alu 2 148 0 4 1216 180 152 0 0 chr12 82769842 82769875 -38487655 + A-rich Low_complexity Low_complexity 2 34 0 4 1216 230 297 121 67 chr12 82770664 82770848 -38486682 - MIRc SINE MIR -15 193 2 4 1216 3029 34 0 6 chr12 82770873 82771232 -38486298 - L1Md_F2 LINE L1 -9 6573 6217 4 1216 207 308 174 46 chr12 82771287 82771505 -38486025 - L2c LINE L2 -2 3385 3140 4 1216 443 295 84 45 chr12 82771778 82771980 -38485550 + B3 SINE B2 4 213 -3 4 1216 1538 261 110 18 chr12 82771992 82772707 -38484823 + L1M4 LINE L1 4710 5499 -2286 4 1216 715 144 101 31 chr12 82772743 82772872 -38484658 - B1_Mus2 SINE Alu 0 147 10 4 1216 411 303 88 77 chr12 82772875 82773147 -38484383 - ORR1E LTR MaLR -8 351 77 4 1216 1776 147 110 27 chr12 82773155 82773490 -38484040 - ORR1B2 LTR MaLR -4 363 1 4 1216 617 245 16 18 chr12 82773766 82773957 -38483573 - ORR1C2 LTR MaLR 0 384 191 4 1216 300 70 0 0 chr12 82773997 82774040 -38483490 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1216 243 345 12 23 chr12 82774042 82774128 -38483402 - B3A SINE B2 -112 86 2 4 1216 412 290 73 3 chr12 82774128 82774286 -38483244 - MER33 DNA MER1_type -186 138 1 4 1216 209 320 61 46 chr12 82774529 82774660 -38482870 + MIRb SINE MIR 135 267 -1 4 1216 1555 294 36 7 chr12 82775206 82775609 -38481921 + Tigger7 DNA MER2_type 11 427 -2064 4 1216 3659 106 6 21 chr12 82775609 82776137 -38481393 + Lx2 LINE L1 6478 6997 0 4 1216 1555 308 70 75 chr12 82776137 82776426 -38481104 + Tigger7 DNA MER2_type 411 698 -7 4 1216 324 248 116 102 chr12 82776959 82777207 -38480323 - LTR48 LTR ERV1 -49 738 384 4 1216 556 204 19 0 chr12 82777313 82777421 -38480109 - PB1D9 SINE Alu 0 120 11 4 1216 198 103 0 0 chr12 82777424 82777453 -38480077 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1216 659 268 21 0 chr12 82777482 82777624 -38479906 - B3A SINE B2 -53 145 1 4 1216 1256 34 0 0 chr12 82778584 82778730 -38478800 + B1_Mus2 SINE Alu 2 147 0 4 1216 273 282 14 0 chr12 82778809 82778880 -38478650 - tRNA-Ala-GCY_ tRNA tRNA -3 72 1 4 1216 332 273 49 29 chr12 82778916 82779018 -38478512 + PB1 SINE Alu 8 111 -16 4 1216 216 296 153 14 chr12 82779669 82779741 -38477789 + ID4_ SINE ID 2 83 0 4 1216 201 298 0 17 chr12 82779741 82779799 -38477731 + GA-rich Low_complexity Low_complexity 3 59 0 4 1216 203 229 12 125 chr12 82779809 82779889 -38477641 - MIR SINE MIR -92 170 100 4 1216 207 114 0 0 chr12 82780149 82780184 -38477346 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1216 263 128 0 42 chr12 82780297 82780349 -38477181 + B1F SINE Alu 71 141 -8 4 1216 262 286 72 54 chr12 82780431 82780542 -38476988 - PB1D9 SINE Alu 0 120 8 4 1216 354 45 0 0 chr12 82780543 82780587 -38476943 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1216 432 0 0 0 chr12 82780589 82780637 -38476893 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1216 379 287 25 34 chr12 82780637 82780756 -38476774 - RSINE1 SINE B4 -45 120 3 5 1216 511 260 53 33 chr12 82780841 82780992 -38476538 - MER5A1 DNA MER1_type -7 159 6 5 1216 249 309 25 0 chr12 82781384 82781465 -38476065 - MIR SINE MIR -94 168 86 5 1216 23 0 0 0 chr12 82782158 82782181 -38475349 + AT_rich Low_complexity Low_complexity 1 23 0 5 1216 909 167 0 0 chr12 82782286 82782424 -38475106 + B1_Mus1 SINE Alu 5 142 -6 5 1216 254 197 0 29 chr12 82782428 82782496 -38475034 + GA-rich Low_complexity Low_complexity 1 66 0 5 1216 441 0 0 0 chr12 82782956 82783005 -38474525 + (AATAG)n Simple_repeat Simple_repeat 2 50 0 5 1216 399 234 96 0 chr12 82783277 82783371 -38474159 + ID_B1 SINE B4 118 220 -4 5 1216 1226 168 64 0 chr12 82783656 82783859 -38473671 - B3 SINE B2 0 216 1 5 1216 823 76 300 1 chr12 82785253 82785416 -38472114 - ORR1A2 LTR MaLR 0 384 115 5 1216 255 274 100 36 chr12 82785426 82785566 -38471964 + L2a LINE L2 3167 3315 -111 5 1216 660 287 30 0 chr12 82786071 82786235 -38471295 - B4A SINE B4 -123 169 1 5 1216 225 291 25 0 chr12 82786734 82786813 -38470717 - ID4 SINE ID -1 82 2 5 1216 438 291 231 43 chr12 82788023 82788231 -38469299 + MIR SINE MIR 16 262 0 5 1216 189 385 0 62 chr12 82788309 82788406 -38469124 - MIRb SINE MIR -161 107 17 5 1216 387 60 0 0 chr12 82788564 82788614 -38468916 + (GGA)n Simple_repeat Simple_repeat 2 51 0 5 1216 950 82 22 0 chr12 82788698 82788832 -38468698 + B1_Mus1 SINE Alu 12 148 0 5 1216 201 340 107 46 chr12 82788982 82789179 -38468351 - L2c LINE L2 -222 3165 2957 5 1216 556 167 21 10 chr12 82790489 82790586 -38466944 - B3 SINE B2 -5 211 114 5 1216 221 0 35 0 chr12 82790751 82790780 -38466750 + (CCCCCA)n Simple_repeat Simple_repeat 4 33 0 5 1216 193 312 140 56 chr12 82791048 82791263 -38466267 - MIR SINE MIR -35 233 2 5 1216 520 158 0 68 chr12 82791670 82791758 -38465772 - ID SINE ID -142 82 1 5 1216 684 147 5 53 chr12 82792580 82792767 -38464763 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 5 1216 381 282 88 83 chr12 82792957 82793162 -38464368 - MER20 DNA MER1_type -13 206 1 5 1216 305 367 43 14 chr12 82793162 82793303 -38464227 + MIRb SINE MIR 53 197 -71 5 1216 486 204 33 0 chr12 82793488 82793597 -38463933 - PB1D10 SINE Alu -4 113 1 5 1216 7669 30 0 0 chr12 82793749 82794626 -38462904 + L1Md_A LINE L1 5705 6581 -1 5 1216 324 0 0 0 chr12 82794945 82794981 -38462549 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1216 180 0 0 0 chr12 82795056 82795076 -38462454 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1216 1169 68 0 7 chr12 82795087 82795235 -38462295 - B1_Mus1 SINE Alu 0 148 2 5 1216 264 59 0 0 chr12 82795560 82795594 -38461936 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 5 1216 2684 139 67 9 chr12 82795978 82796442 -38461088 + RLTR19 LTR ERVK 9 499 0 5 1216 409 255 38 76 chr12 82796796 82796953 -38460577 + MT2B LTR ERVL 128 278 -323 5 1216 840 138 0 21 chr12 82796841 82796982 -38460548 + B1_Mur4 SINE Alu 12 149 -1 5 1216 301 315 177 0 chr12 82797002 82797144 -38460386 + MIRb SINE MIR 79 245 -23 5 1216 195 254 55 0 chr12 82797303 82797358 -38460172 - L2a LINE L2 -47 3379 3322 5 1216 534 288 89 73 chr12 82797359 82797550 -38459980 + B3A SINE B2 1 194 -1 5 1216 649 269 144 51 chr12 82797833 82798146 -38459384 + MER2 DNA MER2_type 4 345 0 5 1216 643 244 8 0 chr12 82798440 82798563 -38458967 + RSINE1 SINE B4 13 136 -29 5 1216 401 287 9 9 chr12 82798629 82798745 -38458785 + PB1D10 SINE Alu 1 116 -1 5 1216 514 269 83 15 chr12 82799600 82799732 -38457798 - B1F SINE Alu -6 143 3 5 1216 774 252 63 43 chr12 82800486 82800693 -38456837 - B3 SINE B2 -4 212 2 5 1216 1355 224 46 117 chr12 82801209 82801603 -38455927 - MTE2a LTR MaLR -13 366 1 5 1216 807 40 0 0 chr12 82801671 82801770 -38455760 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 5 1216 1575 29 0 0 chr12 82801779 82801953 -38455577 - B2_Mm1a SINE B2 -18 175 2 5 1216 760 274 43 47 chr12 82802082 82802293 -38455237 + MER20 DNA MER1_type 1 210 -9 5 1216 3630 88 149 2 chr12 82802347 82802870 -38454660 - MT2B LTR ERVL -1 600 1 5 1216 1431 281 65 27 chr12 82804108 82804660 -38452870 - Charlie1a DNA MER1_type -34 1421 849 5 1216 242 0 61 0 chr12 82804850 82804883 -38452647 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 1216 414 314 8 16 chr12 82805078 82805201 -38452329 - B4A SINE B4 0 292 171 5 1216 3954 175 128 51 chr12 82805201 82806039 -38451491 - RMER19B LTR ERVK 0 902 1 5 1216 346 253 11 44 chr12 82806120 82806211 -38451319 - B4A SINE B4 -204 88 1 5 1216 388 277 30 30 chr12 82806213 82806347 -38451183 - Charlie1a DNA MER1_type -584 871 738 5 1216 296 77 19 0 chr12 82806357 82806409 -38451121 + (CAAAA)n Simple_repeat Simple_repeat 1 53 0 5 1216 529 298 75 63 chr12 82806433 82806687 -38450843 - Charlie1a DNA MER1_type -732 723 467 5 1216 848 78 139 0 chr12 82806991 82807120 -38450410 + B1_Mm SINE Alu 1 147 0 5 1216 516 275 28 0 chr12 82807165 82807274 -38450256 - B1F SINE Alu -31 118 7 5 1216 711 238 24 12 chr12 82807573 82807743 -38449787 - B3A SINE B2 -9 189 18 5 1216 642 37 0 0 chr12 82807745 82807826 -38449704 + (TC)n Simple_repeat Simple_repeat 1 81 0 5 1216 632 339 47 41 chr12 82808285 82808624 -38448906 + ORR1E LTR MaLR 8 348 -11 5 1216 1485 293 74 44 chr12 82808639 82809233 -38448297 + ORR1E-int LTR MaLR 12 654 -926 5 1216 3556 134 48 24 chr12 82809238 82809864 -38447666 + RMER1B Other Other 426 1066 0 5 1216 397 330 104 38 chr12 82809912 82810095 -38447435 + ORR1E-int LTR MaLR 712 906 -674 5 1216 600 262 11 58 chr12 82810630 82810804 -38446726 + ORR1E-int LTR MaLR 886 1051 -529 5 1216 504 239 286 27 chr12 82811001 82811225 -38446305 + RMER15 LTR ERVL 294 575 0 5 1216 847 275 62 9 chr12 82811225 82811615 -38445915 + ORR1E-int LTR MaLR 1077 1527 -53 5 1216 502 318 74 51 chr12 82811615 82811966 -38445564 + ORR1E LTR MaLR 1 359 0 5 1216 652 283 79 70 chr12 82812357 82812585 -38444945 + B4A SINE B4 1 230 -62 5 1216 477 0 0 0 chr12 82812833 82812886 -38444644 + (TCC)n Simple_repeat Simple_repeat 1 53 0 5 1216 1246 73 0 12 chr12 82813219 82813386 -38444144 + B2_Mm2 SINE B2 2 166 -29 5 1216 711 84 53 59 chr12 82814233 82814385 -38443145 - RMER17B LTR ERVK -498 460 310 5 1216 479 265 0 86 chr12 82814622 82814750 -38442780 - PB1D10 SINE Alu 0 117 1 5 1216 210 200 125 0 chr12 82814903 82814943 -38442587 + B4A SINE B4 89 133 -159 5 1216 210 256 152 22 chr12 82814909 82815001 -38442529 + PB1D10 SINE Alu 13 116 -1 5 1216 372 43 0 0 chr12 82815045 82815091 -38442439 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 5 1216 432 0 0 0 chr12 82815091 82815139 -38442391 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1216 807 203 138 54 chr12 82815141 82815365 -38442165 - B4 SINE B4 -15 277 35 5 1216 363 286 0 12 chr12 82815524 82815609 -38441921 + RSINE1 SINE B4 3 86 -79 5 1216 195 0 56 28 chr12 82815635 82815671 -38441859 + (CACCC)n Simple_repeat Simple_repeat 5 41 0 5 1216 605 180 108 0 chr12 82817193 82817304 -38440226 + ID_B1 SINE B4 100 222 -2 5 1216 22 0 0 0 chr12 82817306 82817328 -38440202 + AT_rich Low_complexity Low_complexity 1 22 0 5 1216 379 279 16 39 chr12 82817881 82818008 -38439522 - MER96B DNA hAT -19 398 275 5 1216 240 35 0 0 chr12 82818328 82818357 -38439173 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 5 1216 448 269 9 9 chr12 82819091 82819207 -38438323 - PB1 SINE Alu -11 116 1 5 1216 281 230 26 51 chr12 82823609 82823687 -38433843 - L2a LINE L2 -13 3413 3338 5 1216 278 245 124 97 chr12 82823751 82823864 -38433666 + MER58A DNA MER1_type 42 157 -67 5 1216 325 164 14 14 chr12 82823899 82823973 -38433557 + GA-rich Low_complexity Low_complexity 2 75 0 5 1216 783 104 0 0 chr12 82823974 82824089 -38433441 + (GAAA)n Simple_repeat Simple_repeat 4 118 0 5 1216 244 235 0 0 chr12 82824090 82824141 -38433389 + MER58A DNA MER1_type 174 224 0 5 1216 1190 36 0 7 chr12 82827802 82827940 -38429590 + B1_Mm SINE Alu 1 137 -10 5 1216 270 0 0 0 chr12 82827940 82827970 -38429560 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1216 269 267 74 49 chr12 82828693 82828815 -38428715 + Charlie23a DNA MER1_type 196 320 -19 5 1216 291 267 160 9 chr12 82829660 82829766 -38427764 - MIR SINE MIR -22 240 119 5 1216 382 272 199 85 chr12 82830170 82830371 -38427159 + MER58A DNA MER1_type 1 224 0 5 1216 322 251 105 2 chr12 82830439 82830544 -38426986 + PB1D7 SINE Alu 9 127 0 5 1216 984 0 44 0 chr12 82830888 82831024 -38426506 + (CA)n Simple_repeat Simple_repeat 1 142 0 5 1216 1462 260 79 75 chr12 82833350 82833894 -38423636 - MER44B DNA MER2_type 0 550 5 5 1216 191 98 0 68 chr12 82834383 82834427 -38423103 + C-rich Low_complexity Low_complexity 1 41 0 5 1216 638 215 52 0 chr12 82834526 82834661 -38422869 - B1F SINE Alu -7 142 1 5 1216 334 295 82 29 chr12 82836343 82836530 -38421000 + MIRb SINE MIR 2 196 -72 5 1216 456 284 0 8 chr12 82836570 82836687 -38420843 - PB1D10 SINE Alu -1 116 1 5 1217 1071 309 65 24 chr12 82838030 82838653 -38418877 + Lx9 LINE L1 6816 7467 -6 5 1217 262 271 0 67 chr12 82838770 82838845 -38418685 + ID4 SINE ID 3 72 -11 5 1217 288 170 0 0 chr12 82839313 82839366 -38418164 + GA-rich Low_complexity Low_complexity 2 54 0 5 1217 190 200 0 0 chr12 82839375 82839410 -38418120 + MIRb SINE MIR 223 257 -11 5 1217 580 276 60 24 chr12 82839818 82840002 -38417528 - B3A SINE B2 -3 190 1 5 1217 2853 101 37 10 chr12 82840035 82840445 -38417085 + MTC LTR MaLR 1 421 0 5 1217 279 263 26 13 chr12 82841549 82841626 -38415904 + ID_B1 SINE B4 128 205 -19 5 1217 759 53 0 0 chr12 82841628 82841723 -38415807 - BC1_Mm scRNA scRNA -57 95 1 6 1217 1304 287 51 10 chr12 82841749 82842256 -38415274 + L1MB8 LINE L1 4600 5127 -1019 6 1217 618 298 120 42 chr12 82842339 82842941 -38414589 + L1MB8 LINE L1 5279 5927 -251 6 1217 391 302 144 80 chr12 82842963 82843262 -38414268 + MLT1D LTR MaLR 186 503 -2 6 1217 438 278 151 5 chr12 82843327 82843468 -38414062 - ID_B1 SINE B4 0 224 70 6 1217 229 317 0 16 chr12 82843452 82843513 -38414017 - ID4_ SINE ID -21 62 3 6 1217 289 218 51 0 chr12 82843533 82843611 -38413919 + L1MB8 LINE L1 6101 6182 -2 6 1217 210 167 0 0 chr12 82843646 82843706 -38413824 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1217 402 239 13 13 chr12 82843708 82843865 -38413665 + (CTCA)n Simple_repeat Simple_repeat 4 160 0 6 1217 474 207 0 0 chr12 82843867 82844046 -38413484 + CT-rich Low_complexity Low_complexity 2 180 0 6 1217 357 24 0 0 chr12 82844046 82844088 -38413442 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1217 247 160 59 20 chr12 82845512 82845563 -38411967 + RMER30 DNA MER1_type 143 195 -7 6 1217 726 103 167 0 chr12 82845595 82845721 -38411809 - B1_Mur1 SINE Alu 0 149 3 6 1217 377 249 134 10 chr12 82847418 82847649 -38409881 - L1MB8 LINE L1 -110 6064 5790 6 1217 265 302 54 101 chr12 82848352 82848481 -38409049 - MTEb LTR MaLR 0 379 257 6 1217 261 0 0 0 chr12 82848678 82848707 -38408823 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1217 305 279 49 98 chr12 82848729 82848892 -38408638 - RSINE1 SINE B4 0 165 11 6 1217 231 235 0 56 chr12 82849243 82849315 -38408215 + L1MC5 LINE L1 7711 7778 -183 6 1217 273 162 19 57 chr12 82849431 82849536 -38407994 + GA-rich Low_complexity Low_complexity 2 102 0 6 1217 359 302 16 16 chr12 82850800 82850921 -38406609 - MIRb SINE MIR -35 233 113 6 1217 812 184 7 13 chr12 82851035 82851184 -38406346 - B1_Mur3 SINE Alu 0 149 2 6 1217 407 179 15 0 chr12 82851799 82851866 -38405664 - ORR1E LTR MaLR -287 72 5 6 1217 537 287 7 34 chr12 82852267 82852415 -38405115 - ID_B1 SINE B4 0 224 81 6 1217 289 345 62 21 chr12 82852408 82852435 -38405095 - B4A SINE B4 -56 236 89 6 1217 444 283 17 17 chr12 82852435 82852550 -38404980 - FAM SINE Alu -58 253 139 6 1217 218 310 17 0 chr12 82852710 82852768 -38404762 + ID4 SINE ID 23 81 -2 6 1217 564 268 102 62 chr12 82852795 82853069 -38404461 + B4 SINE B4 1 285 -7 6 1217 222 278 205 8 chr12 82853502 82853629 -38403901 - MIRm SINE MIR -122 154 3 6 1217 3649 13 0 0 chr12 82854069 82854465 -38403065 + MTA_Mm LTR MaLR 1 396 0 6 1217 226 282 18 97 chr12 82855108 82855273 -38402257 + RMER10A LTR ERVL 143 294 -148 6 1217 461 321 278 0 chr12 82856044 82856396 -38401134 + MLT1G LTR MaLR 90 539 -52 6 1217 240 59 0 0 chr12 82856576 82856610 -38400920 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1217 345 140 0 0 chr12 82857866 82857923 -38399607 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 6 1217 1999 227 24 86 chr12 82857939 82858614 -38398916 + Lx9 LINE L1 6710 7342 -302 6 1217 477 76 0 0 chr12 82858618 82858684 -38398846 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1217 246 216 0 56 chr12 82858685 82858739 -38398791 + G-rich Low_complexity Low_complexity 1 51 0 6 1217 599 194 50 25 chr12 82858739 82858898 -38398632 + Lx9 LINE L1 7343 7505 -139 6 1217 3403 55 5 0 chr12 82858965 82859382 -38398148 - L1_Mus1 LINE L1 0 6567 6149 6 1217 960 275 150 29 chr12 82859427 82859913 -38397617 + Lx8 LINE L1 6165 6709 -764 6 1217 717 337 94 19 chr12 82859924 82860445 -38397085 + Lx8 LINE L1 6782 7341 -132 6 1217 348 322 16 24 chr12 82861899 82862023 -38395507 + MIRb SINE MIR 46 168 -100 6 1217 212 0 36 0 chr12 82862064 82862092 -38395438 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1217 671 206 70 0 chr12 82862113 82862241 -38395289 - ID_B1 SINE B4 -9 215 83 6 1217 531 236 128 18 chr12 82862893 82863057 -38394473 + B3A SINE B2 1 182 -16 6 1217 344 215 50 101 chr12 82863652 82863664 -38393866 + MT2B LTR ERVL 152 157 -444 6 1217 598 172 60 0 chr12 82863664 82863780 -38393750 + B1_Mur1 SINE Alu 1 123 -26 6 1217 262 325 0 12 chr12 82863785 82863837 -38393693 + polypurine Low_complexity Low_complexity 4 55 0 6 1217 284 0 28 0 chr12 82863837 82863873 -38393657 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 6 1217 262 325 0 12 chr12 82863873 82863904 -38393626 + polypurine Low_complexity Low_complexity 56 86 0 6 1217 1262 48 0 0 chr12 82864076 82864223 -38393307 + B1_Mus2 SINE Alu 1 147 0 6 1217 181 0 0 65 chr12 82864223 82864254 -38393276 + (CAAAAA)n Simple_repeat Simple_repeat 6 34 0 6 1217 1253 41 0 0 chr12 82864300 82864446 -38393084 + B1_Mm SINE Alu 2 147 0 6 1217 244 328 52 36 chr12 82864703 82864896 -38392634 - MIR SINE MIR -21 241 46 6 1217 1300 240 97 10 chr12 82865813 82866124 -38391406 - MTD LTR MaLR -69 350 13 6 1217 270 0 0 0 chr12 82866124 82866154 -38391376 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1217 258 338 31 55 chr12 82866825 82866988 -38390542 - MIR3 SINE MIR -27 181 23 6 1217 180 358 97 32 chr12 82867554 82867678 -38389852 - L3 LINE CR1 -25 4464 4333 6 1217 221 291 79 34 chr12 82868148 82868237 -38389293 + L2b LINE L2 3240 3381 -45 6 1217 228 233 167 0 chr12 82868238 82868298 -38389232 + ID4_ SINE ID 1 70 -13 6 1217 232 300 142 54 chr12 82868813 82868961 -38388569 - RSINE1 SINE B4 0 165 5 6 1217 1003 134 0 7 chr12 82869132 82869275 -38388255 - B1_Mus1 SINE Alu -5 143 2 6 1217 285 75 0 0 chr12 82869613 82869653 -38387877 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1217 386 105 13 0 chr12 82869779 82869848 -38387682 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1217 372 59 0 0 chr12 82869848 82869899 -38387631 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1217 386 105 13 0 chr12 82869899 82869905 -38387625 + (TC)n Simple_repeat Simple_repeat 1 6 0 6 1217 494 284 0 0 chr12 82869905 82870007 -38387523 - RSINE1 SINE B4 -60 105 4 6 1217 490 281 171 90 chr12 82870346 82870733 -38386797 + MLT1J LTR MaLR 3 420 -92 6 1217 412 349 142 49 chr12 82872074 82872166 -38385364 + HAL1-3A_ME LINE L1 1975 2058 -800 6 1217 662 194 72 36 chr12 82872166 82872305 -38385225 + B1_Mur4 SINE Alu 1 144 -6 6 1217 412 349 142 49 chr12 82872305 82872598 -38384932 + HAL1-3A_ME LINE L1 2059 2396 -462 6 1217 1014 115 0 0 chr12 82872793 82872949 -38384581 + (CA)n Simple_repeat Simple_repeat 1 156 0 6 1217 203 359 65 11 chr12 82874190 82874283 -38383247 + L2a LINE L2 3290 3387 -39 6 1217 952 212 76 0 chr12 82874903 82875087 -38382443 - URR1A DNA MER1_type 0 226 29 6 1217 427 245 0 10 chr12 82875089 82875192 -38382338 + ID_B1 SINE B4 122 223 -1 6 1217 468 100 0 0 chr12 82875912 82875992 -38381538 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 6 1217 332 318 113 119 chr12 82876502 82876981 -38380549 + LTR33B LTR ERVL 25 500 -3 6 1217 396 267 29 0 chr12 82877851 82877956 -38379574 + PB1D10 SINE Alu 3 110 -7 6 1217 687 236 157 28 chr12 82877983 82878231 -38379299 + B4A SINE B4 5 284 -8 6 1217 322 266 16 31 chr12 82878235 82878363 -38379167 + (CATA)n Simple_repeat Simple_repeat 3 128 0 6 1217 266 237 16 38 chr12 82878379 82878563 -38378967 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 6 1217 913 131 27 14 chr12 82879748 82879895 -38377635 + B1_Mur3 SINE Alu 1 149 0 6 1217 429 141 0 0 chr12 82880528 82880599 -38376931 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 1217 23 0 0 0 chr12 82881196 82881219 -38376311 + GC_rich Low_complexity Low_complexity 1 23 0 6 1217 26 30 0 0 chr12 82881882 82881915 -38375615 + GC_rich Low_complexity Low_complexity 1 33 0 6 1217 25 83 0 0 chr12 82882045 82882105 -38375425 + GC_rich Low_complexity Low_complexity 1 60 0 6 1217 206 226 47 23 chr12 82882106 82882192 -38375338 + (CCCG)n Simple_repeat Simple_repeat 1 88 0 6 1217 460 259 37 0 chr12 82883009 82883117 -38374413 - PB1D10 SINE Alu -1 116 5 6 1217 24 0 0 0 chr12 82883573 82883597 -38373933 + AT_rich Low_complexity Low_complexity 1 24 0 6 1217 645 220 134 27 chr12 82883654 82883841 -38373689 + B3 SINE B2 1 207 -9 6 1217 251 260 63 25 chr12 82884391 82884470 -38373060 + L2a LINE L2 3317 3398 -28 6 1217 746 235 58 12 chr12 82884554 82884726 -38372804 + B4A SINE B4 2 181 -111 6 1217 333 221 0 61 chr12 82885098 82885180 -38372350 - HAL1-3A_ME LINE L1 -806 2052 1976 6 1217 243 89 35 18 chr12 82885187 82885244 -38372286 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1217 246 259 86 0 chr12 82885246 82885304 -38372226 - RMER15 LTR ERVL -108 467 405 6 1217 234 0 0 0 chr12 82886035 82886061 -38371469 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1217 583 280 7 29 chr12 82886069 82886205 -38371325 - RSINE1 SINE B4 -32 133 1 6 1217 283 343 18 0 chr12 82886217 82886354 -38371176 - L1M1 LINE L1 -363 5821 5682 6 1217 333 264 0 11 chr12 82886362 82886450 -38371080 - L1P5 LINE L1 -540 5616 5530 6 1217 252 100 0 0 chr12 82886463 82886503 -38371027 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1217 1202 55 0 7 chr12 82886504 82886650 -38370880 - B1_Mus2 SINE Alu -2 145 1 6 1217 1135 135 51 20 chr12 82886965 82887162 -38370368 - URR1B DNA MER1_type -1 224 22 6 1217 1234 113 16 5 chr12 82887337 82887524 -38370006 + B2_Mm2 SINE B2 7 195 0 6 1217 345 303 135 19 chr12 82888049 82888308 -38369222 + L1MA8 LINE L1 5996 6284 -7 6 1217 446 251 69 100 chr12 82888323 82888535 -38368995 + B3A SINE B2 1 186 -9 6 1217 660 202 8 0 chr12 82888538 82888662 -38368868 + B1_Mus2 SINE Alu 5 129 -18 6 1217 426 39 0 0 chr12 82888683 82888735 -38368795 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 7 1217 26 0 0 0 chr12 82888760 82888786 -38368744 + AT_rich Low_complexity Low_complexity 1 26 0 7 1217 1356 79 0 26 chr12 82889235 82889429 -38368101 - B2_Mm2 SINE B2 -5 190 2 7 1217 884 131 29 81 chr12 82890002 82890176 -38367354 - RLTR23 LTR ERV1 -265 165 1 7 1217 482 279 54 0 chr12 82890180 82890309 -38367221 - RSINE1 SINE B4 0 165 30 7 1217 216 302 0 0 chr12 82890639 82890692 -38366838 - L2 LINE L2 -1001 2418 2366 7 1217 2062 129 60 8 chr12 82890877 82891061 -38366469 - ORR1D1 LTR MaLR -2 372 177 7 1217 369 0 0 0 chr12 82891061 82891102 -38366428 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1217 2062 129 60 8 chr12 82891102 82891268 -38366262 - ORR1D1 LTR MaLR -198 176 4 7 1217 236 280 200 0 chr12 82892296 82892396 -38365134 - MIR SINE MIR -32 230 111 7 1217 464 84 2 2 chr12 82892396 82892486 -38365044 + ORR1A2 LTR MaLR 1 90 -256 7 1217 252 319 0 0 chr12 82892543 82892612 -38364918 + G-rich Low_complexity Low_complexity 4 72 0 7 1217 1937 116 11 18 chr12 82892732 82893049 -38364481 + ORR1A2 LTR MaLR 46 370 0 7 1217 212 192 77 0 chr12 82893678 82893730 -38363800 + CT-rich Low_complexity Low_complexity 2 57 0 7 1217 228 35 0 0 chr12 82893757 82893786 -38363744 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1217 276 232 170 12 chr12 82894868 82894961 -38362569 + B1F1 SINE Alu 1 109 -11 7 1217 252 314 84 19 chr12 82894966 82895073 -38362457 + MIRc SINE MIR 151 264 -4 7 1217 33 0 0 0 chr12 82895304 82895337 -38362193 + AT_rich Low_complexity Low_complexity 1 33 0 7 1217 635 231 0 56 chr12 82895948 82896074 -38361456 + B3 SINE B2 2 123 -93 7 1217 1812 214 73 97 chr12 82896074 82896592 -38360938 - RLTR18B LTR ERVK -4 508 3 7 1217 635 231 0 56 chr12 82896592 82896607 -38360923 + B3 SINE B2 124 135 -81 7 1217 951 191 131 25 chr12 82896607 82896844 -38360686 - RLTR18-int LTR ERVK -14 5347 5086 7 1217 6280 204 52 98 chr12 82896846 82897959 -38359571 - RLTR18-int LTR ERVK -567 4794 3702 7 1217 3850 35 9 2 chr12 82897959 82898419 -38359111 + L1Md_F2 LINE L1 6120 6582 0 7 1217 6280 204 52 98 chr12 82898419 82898541 -38358989 - RLTR18-int LTR ERVK -1660 3701 3585 7 1217 280 150 0 0 chr12 82898541 82898581 -38358949 - B1_Mus1 SINE Alu -108 40 1 7 1217 6280 204 52 98 chr12 82898581 82899002 -38358528 - RLTR18-int LTR ERVK -1660 3584 3176 7 1217 701 132 42 8 chr12 82899014 82899141 -38358389 + ORR1A2 LTR MaLR 1 170 -208 7 1217 1831 256 104 71 chr12 82899143 82899279 -38358251 - RLTR18-int LTR ERVK -2559 2802 2671 7 1217 878 125 0 7 chr12 82899279 82899424 -38358106 + (TTC)n Simple_repeat Simple_repeat 1 144 0 7 1217 1068 83 0 0 chr12 82899425 82899558 -38357972 - B1_Mus1 SINE Alu -13 135 3 7 1217 1306 126 16 0 chr12 82899558 82899748 -38357782 - B2_Mm2 SINE B2 -2 193 1 7 1217 1831 256 104 71 chr12 82899748 82900297 -38357233 - RLTR18-int LTR ERVK -2691 2670 2092 7 1217 485 284 52 0 chr12 82900289 82900423 -38357107 - RLTR18-int LTR ERVK -3816 1545 1405 7 1217 1656 247 28 46 chr12 82900519 82900767 -38356763 - RLTR18-int LTR ERVK -4930 431 191 7 1217 198 0 0 0 chr12 82900767 82900789 -38356741 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1217 1656 247 28 46 chr12 82900789 82900977 -38356553 - RLTR18-int LTR ERVK -5171 190 3 7 1217 1774 209 108 96 chr12 82901022 82901521 -38356009 - RLTR18B LTR ERVK -5 507 3 7 1217 494 167 0 50 chr12 82901525 82901626 -38355904 + B3 SINE B2 121 216 0 7 1217 1205 55 0 0 chr12 82901879 82902025 -38355505 - B1_Mus1 SINE Alu -1 147 2 7 1217 408 20 0 0 chr12 82902522 82902571 -38354959 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1217 191 128 0 49 chr12 82902589 82902630 -38354900 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 7 1217 367 194 16 0 chr12 82902630 82902692 -38354838 + ID_B1 SINE B4 96 158 -66 7 1217 1472 12 47 0 chr12 82902719 82902891 -38354639 - B2_Mm2 SINE B2 -14 181 2 7 1217 2034 219 85 9 chr12 82902892 82903362 -38354168 - MT2A LTR ERVL -6 595 5 7 1217 403 286 0 11 chr12 82903574 82903666 -38353864 + B1F SINE Alu 1 91 -58 7 1217 268 363 68 55 chr12 82903895 82904131 -38353399 - ORR1E LTR MaLR 0 359 121 7 1217 250 250 47 0 chr12 82905384 82905448 -38352082 + B1F1 SINE Alu 12 78 -71 7 1217 210 162 0 0 chr12 82905468 82905505 -38352025 + B3A SINE B2 3 39 -159 7 1217 1196 47 0 13 chr12 82905508 82905658 -38351872 + B1_Mus1 SINE Alu 1 148 0 7 1217 938 188 21 26 chr12 82905686 82905877 -38351653 + B3 SINE B2 27 216 0 7 1217 21 0 0 0 chr12 82905877 82905898 -38351632 + AT_rich Low_complexity Low_complexity 1 21 0 7 1217 1257 61 43 38 chr12 82905906 82906092 -38351438 - B2_Mm2 SINE B2 -8 187 1 7 1217 281 26 26 0 chr12 82906103 82906141 -38351389 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1217 1140 58 0 0 chr12 82906141 82906278 -38351252 - B1_Mus1 SINE Alu -11 137 1 7 1217 303 239 134 158 chr12 82906748 82906885 -38350645 + MLT1B LTR MaLR 187 335 -55 7 1217 858 132 34 27 chr12 82906885 82907033 -38350497 - B1_Mur3 SINE Alu 0 149 1 7 1217 303 239 134 158 chr12 82907033 82907104 -38350426 + MLT1B LTR MaLR 336 390 0 7 1217 735 290 105 47 chr12 82907115 82907495 -38350035 - L1M5 LINE L1 -467 5712 5311 7 1217 1221 256 75 23 chr12 82908312 82908696 -38348834 - Lx6 LINE L1 -27 7433 7030 7 1217 23 0 0 0 chr12 82908878 82908901 -38348629 + GC_rich Low_complexity Low_complexity 1 23 0 7 1217 431 288 28 21 chr12 82909134 82909276 -38348254 + MLT2D LTR ERVL 69 211 -203 7 1217 251 264 0 43 chr12 82909923 82910109 -38347421 + GA-rich Low_complexity Low_complexity 3 180 0 7 1217 305 229 56 67 chr12 82910212 82910301 -38347229 + 5S rRNA rRNA 2 89 -32 7 1217 260 273 28 83 chr12 82910218 82910326 -38347204 + AmnSINE1 SINE SINE 6 107 -468 7 1217 267 258 30 0 chr12 82910498 82910564 -38346966 + L1MB8 LINE L1 5848 5915 -263 7 1217 1145 172 46 78 chr12 82910730 82911014 -38346516 + Lx5 LINE L1 6771 7045 -5 7 1217 330 292 119 104 chr12 82911103 82911371 -38346159 - MLT1A0 LTR MaLR -21 344 73 7 1217 979 273 38 113 chr12 82911437 82911860 -38345670 + MTE2a LTR MaLR 11 419 0 7 1217 342 0 0 0 chr12 82911910 82911948 -38345582 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1217 459 0 0 0 chr12 82911948 82911998 -38345532 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1217 630 267 26 20 chr12 82912002 82912155 -38345375 + RSINE1 SINE B4 11 164 -1 7 1217 212 380 56 84 chr12 82912155 82912180 -38345350 + B3A SINE B2 10 182 -16 7 1217 246 194 0 0 chr12 82912181 82912248 -38345282 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1217 300 271 71 20 chr12 82912660 82912758 -38344772 + ORSL DNA Tip100 4 106 -169 7 1217 977 240 100 42 chr12 82913001 82913346 -38344184 + MTD LTR MaLR 23 348 -48 7 1217 1498 225 199 57 chr12 82913461 82913989 -38343541 - RMER20B LTR ERVK -23 604 2 7 1217 23 33 0 0 chr12 82914325 82914355 -38343175 + AT_rich Low_complexity Low_complexity 1 30 0 7 1217 1049 136 6 0 chr12 82914530 82914707 -38342823 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 7 1217 282 56 0 0 chr12 82914709 82914745 -38342785 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1217 585 0 0 0 chr12 82914745 82914810 -38342720 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 7 1217 714 262 167 101 chr12 82915087 82915423 -38342107 - MTEa LTR MaLR -4 375 18 7 1217 894 304 100 49 chr12 82915952 82916314 -38341216 - MLT1C LTR MaLR 0 467 82 7 1217 1078 201 54 5 chr12 82916314 82916519 -38341011 - B3 SINE B2 -1 215 1 7 1217 894 304 100 49 chr12 82916519 82916567 -38340963 - MLT1C LTR MaLR -386 81 36 7 1217 343 210 162 24 chr12 82916568 82916679 -38340851 - B1_Mus1 SINE Alu 0 120 3 7 1217 1285 56 73 0 chr12 82916794 82916972 -38340558 + B2_Mm1t SINE B2 2 192 -1 7 1217 1291 164 27 5 chr12 82917040 82917261 -38340269 + URR1A DNA MER1_type 1 226 0 7 1217 651 13 0 0 chr12 82917325 82917401 -38340129 + (CA)n Simple_repeat Simple_repeat 2 77 0 7 1217 230 56 28 0 chr12 82917799 82917835 -38339695 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 7 1217 294 29 0 0 chr12 82918124 82918159 -38339371 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 7 1217 342 0 0 0 chr12 82918508 82918546 -38338984 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 1217 465 66 0 0 chr12 82918554 82918615 -38338915 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1217 207 0 0 0 chr12 82918625 82918648 -38338882 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1217 1197 69 0 0 chr12 82918648 82918793 -38338737 - B1_Mus2 SINE Alu -2 145 1 7 1217 225 139 0 0 chr12 82918816 82918859 -38338671 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1217 1283 67 89 6 chr12 82918863 82919042 -38338488 - B2_Mm2 SINE B2 0 195 2 7 1217 1095 189 42 206 chr12 82920110 82920557 -38336973 + ORR1D1 LTR MaLR 1 374 0 7 1217 350 129 16 0 chr12 82920641 82920703 -38336827 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1217 477 0 0 0 chr12 82921306 82921359 -38336171 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1217 477 80 0 0 chr12 82921359 82921434 -38336096 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 1217 649 267 29 96 chr12 82921803 82922043 -38335487 - MamRep137 DNA TcMar? -200 244 21 7 1217 974 234 14 9 chr12 82922605 82922816 -38334714 + B3 SINE B2 5 216 0 7 1217 224 103 16 49 chr12 82922909 82922970 -38334560 + T-rich Low_complexity Low_complexity 4 62 0 7 1217 507 236 18 35 chr12 82922974 82923088 -38334442 - PB1D10 SINE Alu -1 116 5 7 1217 486 0 0 0 chr12 82923237 82923291 -38334239 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 1217 887 306 179 26 chr12 82923304 82923986 -38333544 - L2 LINE L2 -551 2868 2083 7 1217 333 253 191 0 chr12 82924334 82924432 -38333098 + PB1D10 SINE Alu 3 117 0 7 1217 219 250 0 0 chr12 82924703 82924751 -38332779 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 7 1217 496 240 19 4 chr12 82925706 82925839 -38331691 + L1MB2 LINE L1 5756 5889 -555 7 1217 303 49 0 0 chr12 82925839 82925880 -38331650 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1217 624 252 111 27 chr12 82925899 82926160 -38331370 - B4A SINE B4 -8 284 2 7 1217 708 252 16 15 chr12 82926163 82926324 -38331206 - ID_B1 SINE B4 -1 223 63 7 1217 267 306 48 32 chr12 82926340 82926465 -38331065 - Tigger9a DNA Tigger -550 182 56 7 1217 1446 192 98 166 chr12 82926943 82927093 -38330437 + RMER4B LTR ERVK 3 153 -313 7 1217 3562 18 2 0 chr12 82927093 82927488 -38330042 + MTA_Mm LTR MaLR 1 396 0 8 1217 9118 41 4 1 chr12 82927488 82928583 -38328947 + MTA_Mm-int LTR MaLR 1 1098 0 8 1217 3562 18 2 0 chr12 82928583 82928978 -38328552 + MTA_Mm LTR MaLR 1 396 0 8 1217 1894 126 152 11 chr12 82928978 82929322 -38328208 + RMER4B LTR ERVK 154 584 -1 7 1217 993 313 56 56 chr12 82929338 82929569 -38327961 - MTEa LTR MaLR -15 364 133 8 1217 2243 100 0 42 chr12 82929569 82929904 -38327626 - ORR1A4 LTR MaLR -4 325 5 8 1217 993 313 56 56 chr12 82929904 82930014 -38327516 - MTEa LTR MaLR -247 132 23 8 1217 297 358 24 16 chr12 82929907 82930032 -38327498 - MT2A LTR ERVL -403 130 5 8 1217 583 315 55 52 chr12 82930629 82930920 -38326610 + B4A SINE B4 1 292 0 8 1217 1185 63 0 0 chr12 82931117 82931260 -38326270 + B1_Mus2 SINE Alu 2 144 -3 8 1217 207 0 0 0 chr12 82931260 82931283 -38326247 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8 1217 245 325 0 49 chr12 82931376 82931393 -38326137 - BC1_Mm scRNA scRNA -62 90 14 8 1217 305 233 0 62 chr12 82931393 82931457 -38326073 - tRNA-Ala-GCY_ tRNA tRNA -8 67 8 8 1217 1315 73 17 6 chr12 82931643 82931821 -38325709 + B2_Mm2 SINE B2 2 181 -14 8 1217 1127 239 120 31 chr12 82932262 82932586 -38324944 + ORR1E LTR MaLR 1 353 -6 8 1217 2493 252 62 60 chr12 82933167 82933322 -38324208 + Lx8 LINE L1 6622 6777 -696 8 1217 1608 226 71 13 chr12 82933322 82933716 -38323814 - MTD LTR MaLR 0 419 3 8 1217 2493 252 62 60 chr12 82933716 82934314 -38323216 + Lx8 LINE L1 6778 7377 -96 8 1217 318 26 0 0 chr12 82934346 82934385 -38323145 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1217 205 143 41 0 chr12 82934407 82934456 -38323074 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 8 1217 189 74 0 0 chr12 82934461 82934488 -38323042 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 8 1217 409 220 55 9 chr12 82934488 82934598 -38322932 + MTD LTR MaLR 1 115 -304 8 1217 264 30 0 0 chr12 82935615 82935648 -38321882 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 8 1217 1100 135 166 0 chr12 82935701 82935894 -38321636 + URR1B DNA MER1_type 1 225 0 8 1217 267 272 78 0 chr12 82935949 82936052 -38321478 + MTD LTR MaLR 253 363 -16 8 1217 1092 289 112 31 chr12 82936073 82936530 -38321000 + Ricksha_c DNA MuDR 355 848 -1200 8 1217 1081 122 0 0 chr12 82936635 82936783 -38320747 - B1_Mur4 SINE Alu 0 150 3 8 1217 668 279 107 17 chr12 82936977 82937210 -38320320 + MIRb SINE MIR 15 268 0 8 1217 245 347 128 26 chr12 82937962 82938157 -38319373 - MIRb SINE MIR -18 250 36 8 1217 276 294 111 46 chr12 82938181 82938334 -38319196 - MER5A1 DNA MER1_type -3 163 1 8 1217 270 193 0 0 chr12 82938491 82938548 -38318982 + GA-rich Low_complexity Low_complexity 3 59 0 8 1217 340 277 65 87 chr12 82938578 82938781 -38318749 - MLT1E1A LTR MaLR -18 662 422 8 1217 369 0 0 0 chr12 82938781 82938822 -38318708 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1217 303 323 63 132 chr12 82938822 82939264 -38318266 - MLT1E1A LTR MaLR -203 421 5 8 1217 688 82 22 18 chr12 82939805 82939922 -38317608 + B1_Mur3 SINE Alu 2 149 0 8 1217 206 132 19 0 chr12 82939922 82939975 -38317555 + A-rich Low_complexity Low_complexity 1 54 0 8 1217 1062 274 78 9 chr12 82940205 82940532 -38316998 - MLT1A0 LTR MaLR -4 404 1 8 1217 1290 190 50 143 chr12 82940670 82941069 -38316461 + ORR1D2 LTR MaLR 4 365 -5 8 1217 252 0 0 0 chr12 82941069 82941097 -38316433 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1217 1317 254 86 83 chr12 82941171 82941517 -38316013 - Lx8 LINE L1 -245 7228 6894 8 1217 1208 55 7 0 chr12 82941517 82941663 -38315867 - B1_Mus1 SINE Alu 0 148 2 8 1217 1317 254 86 83 chr12 82941663 82941721 -38315809 - Lx8 LINE L1 -580 6893 6820 8 1217 4559 121 40 28 chr12 82941721 82942468 -38315062 + RMER6A LTR ERVK 1 756 0 8 1217 1317 254 86 83 chr12 82942468 82942518 -38315012 - Lx8 LINE L1 -654 6819 6772 8 1217 1028 224 87 90 chr12 82942522 82942976 -38314554 + RMER2 LTR ERV1 1 549 -18 8 1217 2178 242 56 4 chr12 82942993 82943496 -38314034 - Lx8 LINE L1 -734 6739 6211 8 1217 189 195 0 0 chr12 82944078 82944119 -38313411 + C-rich Low_complexity Low_complexity 1 41 0 8 1217 234 0 0 0 chr12 82944119 82944145 -38313385 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1217 65 81 0 0 chr12 82945005 82945154 -38312376 + AT_rich Low_complexity Low_complexity 1 149 0 8 1217 943 163 14 0 chr12 82947502 82947649 -38309881 + B1_Mur3 SINE Alu 1 149 0 8 1217 239 0 0 31 chr12 82947676 82947708 -38309822 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 8 1217 349 167 19 29 chr12 82947750 82947855 -38309675 + (TA)n Simple_repeat Simple_repeat 1 104 0 8 1217 207 0 0 0 chr12 82947889 82947912 -38309618 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1217 318 232 29 0 chr12 82948067 82948136 -38309394 + ID4 SINE ID 2 72 -11 8 1217 309 275 170 29 chr12 82948348 82948507 -38309023 - B3A SINE B2 -21 195 2 8 1217 712 249 33 16 chr12 82948528 82948712 -38308818 + B3A SINE B2 10 196 -2 8 1217 291 306 36 0 chr12 82948808 82948919 -38308611 + MER20 DNA MER1_type 99 213 -6 8 1217 306 0 0 0 chr12 82949593 82949627 -38307903 + (TTG)n Simple_repeat Simple_repeat 2 35 0 8 1217 393 75 0 0 chr12 82949625 82949678 -38307852 + (TTC)n Simple_repeat Simple_repeat 2 54 0 8 1217 1148 82 0 0 chr12 82949678 82949825 -38307705 - B1_Mus1 SINE Alu 0 148 2 8 1217 326 366 47 26 chr12 82950023 82950214 -38307316 + ORR1E LTR MaLR 4 198 -161 8 1217 212 0 36 0 chr12 82950355 82950383 -38307147 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 1217 245 353 9 0 chr12 82950491 82950607 -38306923 + MIR SINE MIR 72 188 -74 8 1217 220 227 58 43 chr12 82950774 82950843 -38306687 - L2a LINE L2 -82 3344 3275 8 1217 1501 209 146 0 chr12 82951162 82951531 -38305999 + Lx9 LINE L1 7214 7636 -8 8 1217 515 241 169 15 chr12 82951608 82951819 -38305711 + L1MA6 LINE L1 6004 6254 -58 8 1217 664 134 0 118 chr12 82951819 82951954 -38305576 + PB1D9 SINE Alu 2 120 0 8 1217 270 276 122 65 chr12 82951954 82952022 -38305508 + L1MA6 LINE L1 6247 6312 0 8 1217 294 318 111 0 chr12 82952150 82952276 -38305254 + L1MC LINE L1 5361 5500 -2382 8 1217 431 238 148 31 chr12 82952441 82952728 -38304802 + MTEa LTR MaLR 25 376 -3 8 1217 387 105 0 0 chr12 82952753 82952810 -38304720 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1217 279 0 0 0 chr12 82952810 82952840 -38304690 + (GA)n Simple_repeat Simple_repeat 1 31 0 8 1217 420 281 110 38 chr12 82952946 82953183 -38304347 - B4A SINE B4 -12 280 27 8 1217 216 280 53 13 chr12 82953126 82953202 -38304328 - B2_Mm2 SINE B2 -112 83 5 8 1217 198 0 0 0 chr12 82954583 82954605 -38302925 + (G)n Simple_repeat Simple_repeat 1 22 0 8 1217 570 284 137 0 chr12 82955313 82955503 -38302027 - B3 SINE B2 0 216 1 8 1217 587 207 26 8 chr12 82956656 82956773 -38300757 - PB1D9 SINE Alu -1 119 1 8 1217 221 146 24 0 chr12 82958458 82958499 -38299031 + MIR SINE MIR 83 124 -138 8 1217 227 304 148 0 chr12 82959886 82960001 -38297529 + MIRc SINE MIR 69 200 -68 8 1217 421 32 0 31 chr12 82960776 82960841 -38296689 + (CACCC)n Simple_repeat Simple_repeat 4 66 0 8 1217 269 125 0 18 chr12 82961019 82961076 -38296454 + (CGG)n Simple_repeat Simple_repeat 2 57 0 8 1217 219 88 0 0 chr12 82961174 82961208 -38296322 + (TCC)n Simple_repeat Simple_repeat 2 35 0 8 1217 207 114 0 0 chr12 82961317 82961352 -38296178 + (CGG)n Simple_repeat Simple_repeat 2 36 0 8 1217 248 250 29 0 chr12 82962182 82962250 -38295280 - B1F SINE Alu 0 149 80 8 1217 24 0 0 0 chr12 82962300 82962324 -38295206 + AT_rich Low_complexity Low_complexity 1 24 0 8 1217 261 0 0 0 chr12 82962571 82962600 -38294930 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1217 220 229 78 78 chr12 82963757 82963847 -38293683 + L2a LINE L2 3304 3393 -33 8 1217 207 175 0 0 chr12 82964300 82964340 -38293190 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1217 1065 214 0 5 chr12 82965256 82965472 -38292058 + B3 SINE B2 2 216 0 8 1217 348 83 0 0 chr12 82965630 82965678 -38291852 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1217 1618 203 82 70 chr12 82966031 82966592 -38290938 + RLTR20D LTR ERVK 1 568 0 8 1217 3789 272 77 39 chr12 82966640 82968038 -38289492 - Lx7 LINE L1 -417 7279 5834 8 1217 1416 226 13 19 chr12 82968036 82968348 -38289182 + Lx7 LINE L1 5521 5830 -50 8 1218 274 322 40 24 chr12 82969331 82969455 -38288075 + ID_B1 SINE B4 1 126 -98 8 1218 287 321 131 9 chr12 82970845 82971059 -38286471 - L1MD3 LINE L1 -9 7986 7747 8 1218 492 18 0 0 chr12 82973463 82973520 -38284010 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 8 1218 371 242 114 0 chr12 82973520 82973652 -38283878 - B1_Mur1 SINE Alu 0 149 3 8 1218 222 313 119 0 chr12 82973674 82973741 -38283789 - RSINE1 SINE B4 -89 76 2 8 1218 300 200 33 98 chr12 82975081 82975203 -38282327 + MER106B DNA MER1_type 903 1016 -43 8 1218 180 77 0 0 chr12 82975204 82975230 -38282300 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1218 699 184 14 42 chr12 82975230 82975372 -38282158 - B1_Mur3 SINE Alu -11 138 1 8 1218 553 256 16 0 chr12 82975503 82975624 -38281906 + RSINE1 SINE B4 4 126 -39 8 1218 251 254 152 15 chr12 82975677 82975809 -38281721 + MIR SINE MIR 31 180 -82 8 1218 243 0 0 0 chr12 82977297 82977324 -38280206 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1218 251 299 92 10 chr12 82977544 82977642 -38279888 - MER2 DNA MER2_type 0 345 240 8 1218 441 288 75 36 chr12 82977675 82978006 -38279524 - RLTR15 LTR ERVK -15 344 1 8 1218 2896 160 47 145 chr12 82978006 82978750 -38278780 - MYSERV6-int LTR ERVK -2 8957 8287 8 1218 1265 85 51 0 chr12 82978761 82978937 -38278593 - B2_Mm2 SINE B2 -10 185 1 8 1218 2017 137 52 25 chr12 82979018 82979384 -38278146 - MYSERV6-int LTR ERVK -658 8301 7926 8 1218 10575 218 62 28 chr12 82979377 82979692 -38277838 - MYSERV6-int LTR ERVK -5891 3068 2778 8 1218 1585 32 21 0 chr12 82979692 82979881 -38277649 - B2_Mm1t SINE B2 0 193 1 8 1218 10575 218 62 28 chr12 82979881 82980357 -38277173 - MYSERV6-int LTR ERVK -6182 2777 2282 8 1218 1339 60 37 32 chr12 82980357 82980547 -38276983 - B2_Mm2 SINE B2 -3 192 2 8 1218 10575 218 62 28 chr12 82980547 82982365 -38275165 - MYSERV6-int LTR ERVK -6678 2281 372 8 1218 1084 56 0 0 chr12 82982440 82982583 -38274947 - B1_Mus1 SINE Alu 0 148 6 8 1218 519 219 38 82 chr12 82982443 82982602 -38274928 - B4 SINE B4 -69 223 72 8 1218 445 275 4 38 chr12 82982602 82982811 -38274719 - MYSERV6-int LTR ERVK -8586 373 1 8 1218 353 224 32 57 chr12 82982835 82982958 -38274572 - RLTR15 LTR ERVK -238 121 2 8 1218 670 267 51 0 chr12 82983082 82983277 -38274253 - B3 SINE B2 -7 209 5 9 1218 241 305 40 63 chr12 82985111 82985237 -38272293 - B1F1 SINE Alu -9 140 18 9 1218 596 242 12 35 chr12 82986692 82986863 -38270667 + L1MA6 LINE L1 6110 6276 -24 9 1218 298 297 53 32 chr12 82986958 82987102 -38270428 + MIR SINE MIR 89 239 -29 9 1218 296 271 41 10 chr12 82987624 82987721 -38269809 - B4A SINE B4 -11 281 182 9 1218 347 307 92 28 chr12 82989310 82989433 -38268097 + Tigger7 DNA MER2_type 181 314 -2177 9 1218 2338 127 75 5 chr12 82989433 82989820 -38267710 + MTC LTR MaLR 5 418 -3 9 1218 347 307 92 28 chr12 82989820 82989914 -38267616 + Tigger7 DNA MER2_type 315 412 -2079 9 1218 410 193 166 69 chr12 82989934 82990079 -38267451 + Tigger7 DNA MER2_type 2332 2490 -1 9 1218 1188 264 100 22 chr12 82990080 82990572 -38266958 - L1MB2 LINE L1 -67 6104 5575 9 1218 368 278 185 15 chr12 82990577 82990712 -38266818 - RSINE1 SINE B4 0 165 8 9 1218 3864 48 6 2 chr12 82991220 82991698 -38265832 + L1Md_F2 LINE L1 6103 6582 0 9 1218 198 71 0 0 chr12 82991737 82991765 -38265765 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 9 1218 1036 96 6 24 chr12 82991765 82991935 -38265595 + B2_Mm2 SINE B2 26 192 -3 9 1218 648 259 234 13 chr12 82992573 82992808 -38264722 + B4A SINE B4 1 287 -5 9 1218 249 254 14 0 chr12 82993782 82993853 -38263677 + (TCTCTG)n Simple_repeat Simple_repeat 2 73 0 9 1218 408 146 0 0 chr12 82993880 82993969 -38263561 + (TC)n Simple_repeat Simple_repeat 1 89 0 9 1218 351 0 0 0 chr12 82993969 82994008 -38263522 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1218 22 0 0 0 chr12 82994252 82994274 -38263256 + AT_rich Low_complexity Low_complexity 1 22 0 9 1218 3197 59 0 2 chr12 82994863 82995268 -38262262 - L1Md_F2 LINE L1 -1 6581 6178 9 1218 648 240 104 0 chr12 82995308 82995500 -38262030 - B3 SINE B2 -4 212 1 9 1218 275 163 83 9 chr12 82995759 82995841 -38261689 - Charlie5 DNA MER1_type -2534 90 6 9 1218 211 295 127 13 chr12 82996540 82996619 -38260911 + B1F2 SINE Alu 1 88 -61 9 1218 183 294 20 0 chr12 82997327 82997378 -38260152 + L2a LINE L2 3361 3412 -14 9 1218 931 184 72 34 chr12 82997473 82997681 -38259849 - B3 SINE B2 0 216 1 9 1218 587 297 71 9 chr12 82997843 82998067 -38259463 - MER2 DNA MER2_type -97 248 11 9 1218 355 38 38 0 chr12 82998136 82998189 -38259341 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1218 450 0 0 0 chr12 82998189 82998238 -38259292 + (TC)n Simple_repeat Simple_repeat 2 51 0 9 1218 238 274 31 21 chr12 82999394 82999491 -38258039 - L1M5 LINE L1 -591 5649 5552 9 1218 463 219 12 3 chr12 82999551 82999648 -38257882 + PB1D7 SINE Alu 7 103 -17 9 1218 283 216 162 0 chr12 82999925 82999999 -38257531 - ID_B1 SINE B4 -2 222 137 9 1218 402 74 0 0 chr12 83000187 83000241 -38257289 + (CAT)n Simple_repeat Simple_repeat 2 55 0 1 1218 6799 50 14 0 chr12 83000657 83001491 -38256039 - L1Md_F2 LINE L1 0 6582 5737 2 1218 22 35 0 0 chr12 83001593 83001622 -38255908 + AT_rich Low_complexity Low_complexity 1 29 0 3 1218 1124 269 128 55 chr12 83001876 83002510 -38255020 - Lx9 LINE L1 -4 7640 6961 4 1218 1056 232 55 36 chr12 83002502 83002870 -38254660 - Lx9 LINE L1 -1714 5930 5521 4 1218 297 0 0 0 chr12 83003359 83003392 -38254138 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1218 311 272 103 39 chr12 83003932 83004135 -38253395 + MER20 DNA MER1_type 4 219 0 6 1218 597 269 166 17 chr12 83004559 83004658 -38252872 + L1MB7 LINE L1 5760 5862 -322 7 1218 369 0 0 0 chr12 83004658 83004699 -38252831 + (TTATG)n Simple_repeat Simple_repeat 5 45 0 8 1218 597 269 166 17 chr12 83004699 83004943 -38252587 + L1MB7 LINE L1 5863 6153 -31 7 1218 1072 94 17 29 chr12 83005392 83005567 -38251963 - ORR1B1 LTR MaLR 0 394 222 9 1218 1401 241 46 3 chr12 83005584 83005909 -38251621 - Lx5 LINE L1 -8 7042 6704 1 1218 801 226 23 83 chr12 83005984 83006201 -38251329 + B3 SINE B2 4 207 -9 1 1218 655 186 35 14 chr12 83006643 83006785 -38250745 - B1_Mur2 SINE Alu 0 149 5 1 1218 361 250 24 12 chr12 83007237 83007322 -38250208 + B1_Mur2 SINE Alu 64 149 0 1 1218 726 214 6 110 chr12 83007677 83007840 -38249690 - B3 SINE B2 -3 192 47 1 1218 732 200 98 48 chr12 83007932 83008222 -38249308 - RMER21B LTR ERV1 -265 682 324 1 1218 243 0 0 0 chr12 83008593 83008620 -38248910 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 1 1218 188 231 0 0 chr12 83008717 83008756 -38248774 - L4 LINE RTE -326 1703 1665 1 1218 30 0 0 0 chr12 83009809 83009839 -38247691 + AT_rich Low_complexity Low_complexity 1 30 0 1 1218 303 28 0 0 chr12 83010244 83010280 -38247250 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1218 208 0 0 59 chr12 83010524 83010558 -38246972 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 2 1218 1116 68 7 7 chr12 83011042 83011189 -38246341 + B1_Mus1 SINE Alu 1 147 -1 2 1218 335 282 34 7 chr12 83012126 83012244 -38245286 - B1F2 SINE Alu -2 115 2 2 1218 451 252 84 0 chr12 83012436 83012591 -38244939 - B4A SINE B4 -124 168 1 2 1218 28 0 0 0 chr12 83013124 83013152 -38244378 + AT_rich Low_complexity Low_complexity 1 28 0 2 1218 1338 96 32 0 chr12 83014524 83014711 -38242819 - B2_Mm2 SINE B2 -2 193 1 2 1218 189 107 0 0 chr12 83015550 83015578 -38241952 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1218 306 0 0 0 chr12 83016120 83016154 -38241376 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1218 416 234 82 68 chr12 83016446 83016593 -38240937 + B1F SINE Alu 1 149 0 2 1218 427 265 0 0 chr12 83016975 83017058 -38240472 - PB1D10 SINE Alu -29 88 6 2 1218 461 245 167 25 chr12 83017415 83017544 -38239986 - Lx8 LINE L1 -1 7472 7328 3 1218 339 25 0 0 chr12 83017544 83017584 -38239946 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1218 461 245 167 25 chr12 83017584 83017730 -38239800 - Lx8 LINE L1 -146 7327 7159 3 1218 417 295 33 20 chr12 83017887 83018039 -38239491 - RSINE1 SINE B4 -2 163 10 3 1218 27 49 0 0 chr12 83018134 83018175 -38239355 + AT_rich Low_complexity Low_complexity 1 41 0 3 1218 349 250 48 0 chr12 83018301 83018405 -38239125 + PB1D10 SINE Alu 1 109 -8 3 1218 243 0 0 0 chr12 83018432 83018459 -38239071 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1218 846 204 0 0 chr12 83020874 83021016 -38236514 - B1_Mur2 SINE Alu -7 142 1 3 1218 22 70 0 0 chr12 83022007 83022050 -38235480 + AT_rich Low_complexity Low_complexity 1 43 0 3 1218 318 80 0 0 chr12 83022463 83022513 -38235017 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1218 29 60 0 0 chr12 83023401 83023451 -38234079 + AT_rich Low_complexity Low_complexity 1 50 0 3 1218 404 272 61 66 chr12 83023643 83023824 -38233706 - B3 SINE B2 -9 186 7 4 1218 482 311 119 0 chr12 83024603 83024693 -38232837 - ID_B1 SINE B4 -12 212 123 4 1218 1346 53 6 6 chr12 83024693 83024707 -38232823 - B2_Mm1a SINE B2 -19 174 161 4 1218 1627 21 27 0 chr12 83024707 83024895 -38232635 - B2_Mm1a SINE B2 0 193 1 4 1218 1346 53 6 6 chr12 83024895 83025051 -38232479 - B2_Mm1a SINE B2 -33 160 4 4 1218 482 311 119 0 chr12 83025051 83025137 -38232393 - ID_B1 SINE B4 -102 122 17 4 1218 286 330 37 0 chr12 83025578 83025687 -38231843 + PB1D10 SINE Alu 3 115 -2 4 1218 602 296 146 0 chr12 83026177 83026410 -38231120 + B4A SINE B4 3 269 -23 4 1218 225 0 0 0 chr12 83026471 83026496 -38231034 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1218 339 276 158 49 chr12 83026860 83027024 -38230506 + B3A SINE B2 1 182 -16 4 1218 480 226 85 97 chr12 83027088 83027130 -38230400 - B3 SINE B2 -12 183 142 4 1218 503 16 0 15 chr12 83027130 83027195 -38230335 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1218 480 243 61 48 chr12 83027195 83027328 -38230202 - B3 SINE B2 -68 148 10 4 1218 262 289 84 42 chr12 83027921 83028087 -38229443 + MER3 DNA MER1_type 32 204 -5 5 1218 366 325 39 19 chr12 83028560 83028714 -38228816 + Tigger5 DNA MER2_type 35 191 -2215 5 1218 369 0 0 0 chr12 83029457 83029498 -38228032 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1218 321 295 9 0 chr12 83031468 83031573 -38225957 - Tigger7 DNA MER2_type -2376 115 10 5 1218 24 0 0 0 chr12 83031726 83031750 -38225780 + AT_rich Low_complexity Low_complexity 1 24 0 5 1218 537 96 10 21 chr12 83032359 83032455 -38225075 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 5 1218 26 88 0 0 chr12 83033725 83033793 -38223737 + AT_rich Low_complexity Low_complexity 1 68 0 5 1218 252 0 0 0 chr12 83035394 83035422 -38222108 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1218 335 293 167 12 chr12 83035454 83035706 -38221824 - B4A SINE B4 0 292 2 5 1218 330 87 0 0 chr12 83036383 83036429 -38221101 + (CGGTG)n Simple_repeat Simple_repeat 5 50 0 5 1218 237 269 19 28 chr12 83036865 83036972 -38220558 + (CATA)n Simple_repeat Simple_repeat 3 108 0 6 1218 370 283 91 57 chr12 83037196 83037406 -38220124 + MIR SINE MIR 34 250 -12 6 1218 911 201 67 5 chr12 83038744 83038939 -38218591 + B3 SINE B2 1 207 -9 6 1218 875 252 58 41 chr12 83039002 83039279 -38218251 - B4A SINE B4 -8 284 2 6 1218 281 270 0 0 chr12 83040819 83040882 -38216648 + AluG_3 SINE Alu 157 219 -92 6 1218 275 265 102 23 chr12 83041064 83041298 -38216232 - L1ME1 LINE L1 -212 5967 5710 6 1218 842 253 80 19 chr12 83041411 83041673 -38215857 + B4A SINE B4 2 279 -13 6 1218 633 233 21 88 chr12 83042285 83042478 -38215052 + B3A SINE B2 3 182 -16 6 1218 269 318 0 0 chr12 83042561 83042624 -38214906 + MER58A DNA MER1_type 1 63 -161 6 1218 222 128 0 0 chr12 83042872 83042911 -38214619 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1218 204 200 0 0 chr12 83043242 83043292 -38214238 + T-rich Low_complexity Low_complexity 1 50 0 7 1218 1192 48 0 33 chr12 83043438 83043590 -38213940 + B1_Mus2 SINE Alu 1 147 0 7 1218 269 290 0 0 chr12 83043799 83043861 -38213669 + MER58A DNA MER1_type 163 224 0 6 1218 261 219 46 37 chr12 83045463 83045572 -38211958 - Lx9 LINE L1 -2 7642 7533 7 1218 562 196 140 13 chr12 83046762 83046912 -38210618 + ID_B1 SINE B4 30 198 -26 7 1218 26 64 0 0 chr12 83048645 83048692 -38208838 + AT_rich Low_complexity Low_complexity 1 47 0 7 1218 308 265 0 0 chr12 83049792 83049860 -38207670 - RSINE1 SINE B4 -86 79 12 7 1218 462 315 62 0 chr12 83050196 83050374 -38207156 + MER20 DNA MER1_type 30 218 -1 7 1218 486 267 222 12 chr12 83052111 83052517 -38205013 + L1MEc LINE L1 639 1129 -5271 7 1218 247 296 132 27 chr12 83052819 83053076 -38204454 + L1MEc LINE L1 3334 3617 -2702 7 1218 210 31 31 0 chr12 83053381 83053413 -38204117 - B3A SINE B2 -165 33 1 7 1218 1008 67 80 15 chr12 83054133 83054270 -38203260 + B1_Mus2 SINE Alu 2 147 0 7 1218 1322 61 71 16 chr12 83054286 83054439 -38203091 + B2_Mm2 SINE B2 1 161 -34 8 1218 614 25 12 0 chr12 83054439 83054519 -38203011 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 8 1218 1322 61 71 16 chr12 83054519 83054547 -38202983 + B2_Mm2 SINE B2 162 190 -5 8 1218 722 195 87 11 chr12 83056253 83056534 -38200996 + Lx9 LINE L1 7311 7643 -1 8 1218 490 168 0 120 chr12 83056613 83056721 -38200809 + B1_Mur2 SINE Alu 54 148 -1 8 1218 271 290 8 39 chr12 83056807 83056936 -38200594 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 8 1218 444 248 65 36 chr12 83057804 83057942 -38199588 + B1F1 SINE Alu 7 148 -1 8 1218 383 312 89 22 chr12 83058479 83058659 -38198871 - L1MD3 LINE L1 -414 7628 7437 8 1218 423 0 0 0 chr12 83058783 83058830 -38198700 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1218 239 336 186 11 chr12 83058860 83058994 -38198536 - L1MD3 LINE L1 -983 7059 6906 8 1218 1156 150 67 14 chr12 83058994 83059204 -38198326 - URR1B DNA MER1_type 0 225 5 8 1218 412 311 95 30 chr12 83059204 83059564 -38197966 - L1MD3 LINE L1 -1137 6905 6481 8 1218 321 250 13 53 chr12 83060091 83060167 -38197363 - ID4 SINE ID -10 73 1 8 1218 3701 131 20 7 chr12 83060208 83060816 -38196714 - Lx2 LINE L1 0 6997 6382 9 1218 287 211 14 27 chr12 83061489 83061562 -38195968 + B4 SINE B4 162 233 -59 9 1218 549 287 75 28 chr12 83062357 83062626 -38194904 - B4A SINE B4 -2 290 11 9 1218 342 206 230 30 chr12 83063167 83063302 -38194228 - B3A SINE B2 -36 162 1 9 1218 421 252 93 9 chr12 83063355 83063463 -38194067 + PB1D7 SINE Alu 1 117 -3 9 1218 589 187 28 18 chr12 83064757 83064866 -38192664 + ID_B1 SINE B4 115 224 0 9 1218 394 292 204 0 chr12 83066123 83066260 -38191270 + MER44D DNA MER2_type 1 165 -540 9 1218 390 42 0 0 chr12 83066449 83066497 -38191033 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 9 1218 837 240 40 15 chr12 83066565 83066764 -38190766 + B3 SINE B2 2 205 -11 9 1218 372 229 0 24 chr12 83066963 83067048 -38190482 - ID4_ SINE ID 0 83 1 9 1218 242 29 29 0 chr12 83067350 83067385 -38190145 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1218 381 229 47 19 chr12 83067898 83068005 -38189525 + ID_B1 SINE B4 115 224 0 1 1218 406 267 15 15 chr12 83068567 83068700 -38188830 - Lx8 LINE L1 -375 7098 6966 1 1218 1091 31 47 0 chr12 83068921 83069050 -38188480 - B1_Mus1 SINE Alu -12 136 2 1 1218 277 366 55 68 chr12 83069262 83069482 -38188048 - MLT1F-int LTR MaLR -1 1488 1272 1 1218 321 368 78 9 chr12 83069586 83069816 -38187714 - L1MEf LINE L1 -4716 1699 1454 1 1218 307 300 164 16 chr12 83069985 83070290 -38187240 - L1MEf LINE L1 -5216 1184 835 1 1218 325 293 145 53 chr12 83070761 83070988 -38186542 - Lx8 LINE L1 -589 6884 6637 1 1218 391 293 101 49 chr12 83070997 83071345 -38186185 - L1MEc LINE L1 -5572 828 463 1 1218 268 175 111 0 chr12 83071524 83071587 -38185943 - L1MEc LINE L1 -6297 103 34 1 1218 202 81 0 98 chr12 83072050 83072091 -38185439 + A-rich Low_complexity Low_complexity 4 40 0 1 1218 210 270 0 0 chr12 83073950 83074024 -38183506 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1218 759 236 19 0 chr12 83074579 83074740 -38182790 + RSINE1 SINE B4 2 165 0 1 1218 378 0 0 0 chr12 83075200 83075242 -38182288 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1218 217 277 0 0 chr12 83076581 83076628 -38180902 - RSINE1 SINE B4 -31 134 88 1 1218 504 89 62 25 chr12 83077663 83077744 -38179786 - B1_Mur2 SINE Alu 0 149 66 1 1218 659 166 39 70 chr12 83077683 83077839 -38179691 - B2_Mm2 SINE B2 -42 153 3 1 1218 294 301 41 0 chr12 83077945 83078018 -38179512 + PB1D10 SINE Alu 29 104 -13 1 1218 1091 293 122 146 chr12 83078070 83078397 -38179133 - Charlie1a DNA MER1_type -179 1276 1043 1 1218 737 233 47 33 chr12 83078397 83078610 -38178920 - B3 SINE B2 0 216 1 1 1218 1091 293 122 146 chr12 83078610 83078701 -38178829 - Charlie1a DNA MER1_type -413 1042 967 1 1218 1015 116 0 20 chr12 83078701 83078850 -38178680 - B1_Mus2 SINE Alu 0 147 2 1 1218 1091 293 122 146 chr12 83078850 83079632 -38177898 - Charlie1a DNA MER1_type -489 966 105 1 1218 24 67 0 0 chr12 83080004 83080049 -38177481 + AT_rich Low_complexity Low_complexity 1 45 0 1 1218 271 221 130 0 chr12 83080244 83080321 -38177209 - B1F SINE Alu -12 137 51 1 1218 258 244 55 42 chr12 83081203 83081318 -38176212 - MTEa LTR MaLR 0 379 245 1 1218 300 302 16 0 chr12 83081612 83081698 -38175832 - PB1D7 SINE Alu -38 112 23 1 1218 629 206 85 13 chr12 83082104 83082258 -38175272 + B3 SINE B2 4 167 -28 1 1218 366 80 0 0 chr12 83082258 83082308 -38175222 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1218 456 261 87 38 chr12 83082308 83082336 -38175194 + B2_Mm2 SINE B2 168 195 0 1 1218 244 318 59 0 chr12 83082614 83082699 -38174831 + MER103 DNA DNA 20 109 -57 1 1218 279 93 0 0 chr12 83083338 83083381 -38174149 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1 1218 26 64 0 0 chr12 83084366 83084413 -38173117 + AT_rich Low_complexity Low_complexity 1 47 0 1 1218 814 259 11 28 chr12 83086087 83086266 -38171264 + B3A SINE B2 1 176 -22 1 1218 1012 176 85 0 chr12 83087788 83087976 -38169554 + B3 SINE B2 1 204 -12 1 1218 1107 66 0 0 chr12 83088005 83088142 -38169388 + B1_Mus2 SINE Alu 2 138 -9 1 1218 210 37 0 0 chr12 83088142 83088169 -38169361 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1218 864 143 168 76 chr12 83088594 83088791 -38168739 - URR1A DNA MER1_type -11 215 1 1 1218 3119 51 8 0 chr12 83089336 83089728 -38167802 - MTB LTR MaLR 0 400 6 1 1218 482 257 234 45 chr12 83090365 83090733 -38166797 - RLTR11B LTR ERVK -15 438 1 1 1218 242 256 0 0 chr12 83090793 83090836 -38166694 - PB1 SINE Alu -64 63 21 1 1218 463 57 11 64 chr12 83091374 83091468 -38166062 + Lx LINE L1 6566 6654 0 1 1218 548 258 17 76 chr12 83092277 83092449 -38165081 - RSINE1 SINE B4 0 165 4 1 1218 784 172 60 0 chr12 83093616 83093750 -38163780 - B1_Mur4 SINE Alu -7 143 2 1 1218 441 0 0 0 chr12 83094274 83094323 -38163207 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1218 297 0 0 0 chr12 83094323 83094355 -38163175 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1218 759 187 30 0 chr12 83094464 83094598 -38162932 + B1_Mur4 SINE Alu 13 150 0 1 1218 420 37 0 0 chr12 83094928 83094982 -38162548 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 1 1218 504 0 0 0 chr12 83094982 83095038 -38162492 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1218 349 252 40 0 chr12 83095154 83095253 -38162277 - L1MA9 LINE L1 -314 5998 5896 1 1218 670 198 88 34 chr12 83095264 83095468 -38162062 - B3 SINE B2 -1 215 1 1 1218 35 24 0 0 chr12 83095647 83095689 -38161841 + AT_rich Low_complexity Low_complexity 1 42 0 1 1218 26 0 0 0 chr12 83097707 83097733 -38159797 + AT_rich Low_complexity Low_complexity 1 26 0 1 1218 26 0 0 0 chr12 83099415 83099441 -38158089 + AT_rich Low_complexity Low_complexity 1 26 0 1 1219 303 286 39 0 chr12 83104235 83104312 -38153218 - MER2B DNA MER2_type -55 281 202 1 1219 396 193 11 57 chr12 83105194 83105276 -38152254 - RLTR23 LTR ERV1 0 430 353 1 1219 4069 147 117 108 chr12 83105276 83106170 -38151360 + RMER19B LTR ERVK 1 902 0 1 1219 606 290 92 107 chr12 83106189 83106517 -38151013 - RLTR23 LTR ERV1 -107 323 1 1 1219 287 96 0 19 chr12 83106721 83106774 -38150756 + (TTG)n Simple_repeat Simple_repeat 3 54 0 1 1219 345 352 11 15 chr12 83106795 83106931 -38150599 - PB1D10 SINE Alu -1 148 1 1 1219 431 260 105 8 chr12 83106966 83107090 -38150440 - MLT1J LTR MaLR -339 173 38 1 1219 632 84 21 0 chr12 83107259 83107354 -38150176 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 1 1219 1171 50 6 6 chr12 83107354 83107514 -38150016 + (GGAGA)n Simple_repeat Simple_repeat 2 161 0 1 1219 839 236 35 0 chr12 83107553 83107727 -38149803 + B3A SINE B2 1 180 -18 1 1219 23 33 0 0 chr12 83107749 83107779 -38149751 + AT_rich Low_complexity Low_complexity 1 30 0 1 1219 362 291 0 11 chr12 83107794 83107881 -38149649 + B1_Mur1 SINE Alu 64 149 0 1 1219 1259 155 41 16 chr12 83107927 83108170 -38149360 + ORR1D1 LTR MaLR 1 249 -125 1 1219 524 230 47 8 chr12 83108369 83108398 -38149132 + ORR1D1 LTR MaLR 243 270 -104 1 1219 3297 167 110 10 chr12 83108398 83109014 -38148516 + RLTR33 LTR ERVK 1 678 0 1 1219 524 230 47 8 chr12 83109014 83109111 -38148419 + ORR1D1 LTR MaLR 271 373 -1 1 1219 842 259 42 5 chr12 83109779 83109992 -38147538 - ID_B1 SINE B4 -2 222 2 1 1219 299 25 25 0 chr12 83110968 83111008 -38146522 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1219 261 0 0 0 chr12 83111008 83111036 -38146494 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1219 239 370 9 18 chr12 83112151 83112261 -38145269 - RMER15 LTR ERVL -119 456 348 1 1219 734 317 64 64 chr12 83113246 83113543 -38143987 + MER44B DNA MER2_type 2 298 -252 1 1219 253 292 11 33 chr12 83113758 83113850 -38143680 + MER44B DNA MER2_type 382 471 -79 1 1219 297 151 0 0 chr12 83113868 83113921 -38143609 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1 1219 709 199 41 11 chr12 83114687 83114891 -38142639 - ORR1D1 LTR MaLR 0 384 163 1 1219 900 212 46 38 chr12 83114884 83114946 -38142584 - ORR1D1 LTR MaLR -132 242 179 1 1219 2750 31 25 125 chr12 83114946 83115347 -38142183 + RLTR10B2 LTR ERVK 5 365 0 1 1219 900 212 46 38 chr12 83115347 83115524 -38142006 - ORR1D1 LTR MaLR -196 178 1 1 1219 507 56 0 0 chr12 83115543 83115614 -38141916 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1219 563 241 41 12 chr12 83115614 83115748 -38141782 + ORR1D1 LTR MaLR 175 316 -54 1 1219 546 306 28 28 chr12 83116149 83116327 -38141203 + B4A SINE B4 1 178 -114 1 1219 890 96 7 0 chr12 83116341 83116476 -38141054 + (CA)n Simple_repeat Simple_repeat 1 136 0 1 1219 1285 20 0 13 chr12 83116544 83116693 -38140837 - B1_Mm SINE Alu 0 147 1 1 1219 1675 233 60 78 chr12 83116712 83117224 -38140306 - Lx6 LINE L1 -13 7447 6945 1 1219 2100 89 71 62 chr12 83117442 83117764 -38139766 - ORR1A3 LTR MaLR -1 325 1 1 1219 11109 130 48 56 chr12 83117764 83119742 -38137788 - ORR1A3-int LTR MaLR 0 1963 1 1 1219 692 194 19 25 chr12 83119742 83119905 -38137625 - ORR1A3 LTR MaLR 0 370 208 1 1219 774 312 209 31 chr12 83119900 83120389 -38137141 + MER21B LTR ERV1 241 816 -47 1 1219 288 0 0 0 chr12 83120463 83120495 -38137035 + (TTG)n Simple_repeat Simple_repeat 1 32 0 1 1219 803 296 9 18 chr12 83120495 83120704 -38136826 - ID_B1 SINE B4 -13 211 2 1 1219 266 31 0 0 chr12 83120776 83120808 -38136722 - MT2_Mm LTR ERVL 0 493 462 1 1219 3016 38 3 0 chr12 83120836 83121181 -38136349 - ORR1A1 LTR MaLR 0 346 1 1 1219 716 274 57 31 chr12 83121206 83121523 -38136007 - L1MB7 LINE L1 -96 6088 5764 1 1219 204 48 71 0 chr12 83122698 83122740 -38134790 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1219 1193 61 0 7 chr12 83122741 83122890 -38134640 - B1_Mus1 SINE Alu 0 148 1 1 1219 532 275 33 0 chr12 83123155 83123337 -38134193 - L1MC3 LINE L1 -22 7763 7576 1 1219 631 155 118 25 chr12 83123385 83123504 -38134026 - B1_Mur2 SINE Alu -1 148 19 1 1219 610 320 62 12 chr12 83123517 83123840 -38133690 - L1MC3 LINE L1 -340 7445 7107 1 1219 216 97 0 0 chr12 83123847 83123878 -38133652 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 1 1219 891 177 366 36 chr12 83123923 83124008 -38133522 - ORR1D1 LTR MaLR 0 374 284 1 1219 210 37 0 0 chr12 83124008 83124035 -38133495 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1219 891 177 366 36 chr12 83124035 83124230 -38133300 - ORR1D1 LTR MaLR -91 283 1 1 1219 1109 108 24 3 chr12 83124249 83124537 -38132993 + (TCTA)n Simple_repeat Simple_repeat 1 294 0 1 1219 380 309 9 9 chr12 83124550 83124661 -38132869 - PB1D10 SINE Alu -5 112 2 1 1219 357 43 0 0 chr12 83124706 83124753 -38132777 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1219 1162 65 0 7 chr12 83124753 83124893 -38132637 - B1_Mm SINE Alu -8 139 1 1 1219 525 71 0 0 chr12 83124919 83124989 -38132541 + (CTTG)n Simple_repeat Simple_repeat 2 71 0 1 1219 402 21 0 0 chr12 83124990 83125037 -38132493 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1219 547 297 12 43 chr12 83125042 83125204 -38132326 - RSINE1 SINE B4 -7 158 2 1 1219 833 268 27 0 chr12 83125239 83125422 -38132108 - B3 SINE B2 -8 208 21 1 1219 502 301 52 0 chr12 83125427 83125600 -38131930 - L1MC3 LINE L1 -698 7087 6906 1 1219 433 208 10 19 chr12 83125639 83125742 -38131788 - L1MC3 LINE L1 -983 6802 6701 1 1219 253 356 0 0 chr12 83125763 83125836 -38131694 - MIRc SINE MIR -112 156 84 1 1219 244 250 0 16 chr12 83127344 83127405 -38130125 - MIRm SINE MIR -4 272 213 1 1219 243 0 0 0 chr12 83127779 83127806 -38129724 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1219 580 248 114 71 chr12 83128102 83128236 -38129294 - L1_Mur3 LINE L1 -723 5574 5437 2 1219 735 228 45 55 chr12 83128236 83128436 -38129094 - B3A SINE B2 0 198 1 2 1219 580 248 114 71 chr12 83128436 83128578 -38128952 - L1_Mur3 LINE L1 -861 5436 5285 2 1219 210 118 0 0 chr12 83128578 83128612 -38128918 + (CTG)n Simple_repeat Simple_repeat 2 35 0 2 1219 580 290 126 59 chr12 83128612 83128808 -38128722 - L1_Mur3 LINE L1 -1013 5284 5040 2 1219 513 0 0 0 chr12 83128830 83128887 -38128643 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1219 280 302 132 35 chr12 83128890 83129147 -38128383 - L1_Mur3 LINE L1 -1200 4943 4662 2 1219 315 314 72 40 chr12 83129149 83129504 -38128026 - L1_Mur3 LINE L1 -3613 2530 2146 2 1219 273 236 119 3 chr12 83129487 83129645 -38127885 - L1M5 LINE L1 -296 5888 5703 2 1219 22 0 0 0 chr12 83129684 83129706 -38127824 + AT_rich Low_complexity Low_complexity 1 22 0 2 1219 250 290 69 10 chr12 83129718 83129819 -38127711 + L1M2 LINE L1 4837 4943 -1200 2 1219 580 219 6 6 chr12 83129833 83129998 -38127532 + (TA)n Simple_repeat Simple_repeat 1 165 0 2 1219 7295 71 9 35 chr12 83131258 83132420 -38125110 - L1_Mus1 LINE L1 0 6567 5470 2 1219 225 94 0 0 chr12 83132474 83132506 -38125024 + (ATGGTG)n Simple_repeat Simple_repeat 1 32 0 2 1219 485 287 118 25 chr12 83132506 83132667 -38124863 + MER3 DNA MER1_type 25 200 -9 2 1219 914 124 15 0 chr12 83133012 83133149 -38124381 - B1_Mus1 SINE Alu 0 148 10 2 1219 416 212 0 117 chr12 83133047 83133175 -38124355 - MT2B LTR ERVL -337 264 152 2 1219 304 286 39 0 chr12 83135063 83135140 -38122390 - MER2B DNA MER2_type -55 281 202 2 1219 211 320 13 39 chr12 83135137 83135215 -38122315 - ID4 SINE ID -4 79 4 2 1219 956 298 79 79 chr12 83136022 83136104 -38121426 - RLTR23 LTR ERV1 0 430 343 2 1219 4152 148 117 108 chr12 83136104 83136998 -38120532 + RMER19B LTR ERVK 1 902 0 2 1219 956 298 79 79 chr12 83136998 83137345 -38120185 - RLTR23 LTR ERV1 -88 342 1 2 1219 287 96 0 19 chr12 83137549 83137602 -38119928 + (TTG)n Simple_repeat Simple_repeat 3 54 0 2 1219 291 350 0 17 chr12 83137640 83137759 -38119771 - PB1D10 SINE Alu 0 117 1 2 1219 430 260 105 8 chr12 83137794 83137918 -38119612 - MLT1J LTR MaLR -339 173 38 2 1219 612 101 0 0 chr12 83138087 83138176 -38119354 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 2 1219 1171 50 6 6 chr12 83138176 83138336 -38119194 + (GGAGA)n Simple_repeat Simple_repeat 2 161 0 2 1219 870 236 35 0 chr12 83138375 83138549 -38118981 + B3A SINE B2 1 180 -18 2 1219 23 33 0 0 chr12 83138571 83138601 -38118929 + AT_rich Low_complexity Low_complexity 1 30 0 2 1219 358 291 0 11 chr12 83138616 83138703 -38118827 + B1_Mur1 SINE Alu 64 149 0 2 1219 1260 155 41 16 chr12 83138749 83138992 -38118538 + ORR1D1 LTR MaLR 1 249 -125 2 1219 523 230 47 8 chr12 83139191 83139220 -38118310 + ORR1D1 LTR MaLR 243 270 -104 2 1219 3344 172 109 8 chr12 83139220 83139836 -38117694 + RLTR33 LTR ERVK 1 678 0 2 1219 523 230 47 8 chr12 83139836 83139933 -38117597 + ORR1D1 LTR MaLR 271 373 -1 2 1219 873 259 42 5 chr12 83140601 83140814 -38116716 - ID_B1 SINE B4 -2 222 2 2 1219 317 24 24 0 chr12 83141790 83141832 -38115698 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1219 243 0 0 0 chr12 83141832 83141858 -38115672 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1219 239 370 9 18 chr12 83142973 83143083 -38114447 - RMER15 LTR ERVL -119 456 348 2 1219 734 317 64 64 chr12 83144068 83144365 -38113165 + MER44B DNA MER2_type 2 298 -252 2 1219 253 292 11 33 chr12 83144580 83144672 -38112858 + MER44B DNA MER2_type 382 471 -79 2 1219 297 151 0 0 chr12 83144690 83144743 -38112787 + (CATA)n Simple_repeat Simple_repeat 2 54 0 2 1219 709 203 34 11 chr12 83145509 83145717 -38111813 - ORR1D1 LTR MaLR 0 384 163 2 1219 900 212 46 38 chr12 83145710 83145772 -38111758 - ORR1D1 LTR MaLR -132 242 179 2 1219 2750 31 25 125 chr12 83145772 83146173 -38111357 + RLTR10B2 LTR ERVK 5 365 0 2 1219 900 212 46 38 chr12 83146173 83146350 -38111180 - ORR1D1 LTR MaLR -196 178 1 2 1219 507 56 0 0 chr12 83146369 83146440 -38111090 + (TC)n Simple_repeat Simple_repeat 1 71 0 2 1219 563 241 41 12 chr12 83146440 83146574 -38110956 + ORR1D1 LTR MaLR 175 316 -54 2 1219 546 306 28 28 chr12 83146975 83147153 -38110377 + B4A SINE B4 1 178 -114 2 1219 893 90 8 0 chr12 83147167 83147300 -38110230 + (CA)n Simple_repeat Simple_repeat 1 134 0 2 1219 1285 20 0 13 chr12 83147368 83147517 -38110013 - B1_Mm SINE Alu 0 147 1 2 1219 1675 233 60 78 chr12 83147536 83148048 -38109482 - Lx6 LINE L1 -13 7447 6945 2 1219 2100 89 71 62 chr12 83148266 83148588 -38108942 - ORR1A3 LTR MaLR -1 325 1 2 1219 11109 130 48 56 chr12 83148588 83150566 -38106964 - ORR1A3-int LTR MaLR 0 1963 1 2 1219 692 194 19 25 chr12 83150566 83150729 -38106801 - ORR1A3 LTR MaLR 0 370 208 2 1219 774 312 209 31 chr12 83150724 83151213 -38106317 + MER21B LTR ERV1 241 816 -47 2 1219 288 0 0 0 chr12 83151287 83151319 -38106211 + (TTG)n Simple_repeat Simple_repeat 1 32 0 2 1219 803 296 9 18 chr12 83151319 83151528 -38106002 - ID_B1 SINE B4 -13 211 2 2 1219 266 31 0 0 chr12 83151600 83151632 -38105898 - MT2_Mm LTR ERVL 0 493 462 2 1219 3016 38 3 0 chr12 83151660 83152005 -38105525 - ORR1A1 LTR MaLR 0 346 1 2 1219 716 274 57 31 chr12 83152030 83152347 -38105183 - L1MB7 LINE L1 -96 6088 5764 2 1219 204 48 71 0 chr12 83153522 83153564 -38103966 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1219 1193 61 0 7 chr12 83153565 83153714 -38103816 - B1_Mus1 SINE Alu 0 148 1 2 1219 532 275 33 0 chr12 83153979 83154161 -38103369 - L1MC3 LINE L1 -22 7763 7576 2 1219 631 155 118 25 chr12 83154209 83154328 -38103202 - B1_Mur2 SINE Alu -1 148 19 2 1219 610 320 62 12 chr12 83154341 83154664 -38102866 - L1MC3 LINE L1 -340 7445 7107 2 1219 216 97 0 0 chr12 83154671 83154702 -38102828 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 2 1219 891 177 366 36 chr12 83154747 83154832 -38102698 - ORR1D1 LTR MaLR 0 374 284 2 1219 210 37 0 0 chr12 83154832 83154859 -38102671 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1219 891 177 366 36 chr12 83154859 83155054 -38102476 - ORR1D1 LTR MaLR -91 283 1 2 1219 1118 109 24 0 chr12 83155073 83155365 -38102165 + (TCTA)n Simple_repeat Simple_repeat 1 298 0 2 1219 380 309 9 9 chr12 83155378 83155489 -38102041 - PB1D10 SINE Alu -5 112 2 2 1219 357 43 0 0 chr12 83155534 83155581 -38101949 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1219 1162 65 0 7 chr12 83155581 83155721 -38101809 - B1_Mm SINE Alu -8 139 1 2 1219 525 71 0 0 chr12 83155747 83155817 -38101713 + (CTTG)n Simple_repeat Simple_repeat 2 71 0 2 1219 420 20 0 0 chr12 83155818 83155867 -38101663 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1219 547 297 12 43 chr12 83155872 83156034 -38101496 - RSINE1 SINE B4 -7 158 2 2 1219 833 268 27 0 chr12 83156069 83156252 -38101278 - B3 SINE B2 -8 208 21 2 1219 502 301 52 0 chr12 83156257 83156430 -38101100 - L1MC3 LINE L1 -698 7087 6906 2 1219 433 208 10 19 chr12 83156469 83156572 -38100958 - L1MC3 LINE L1 -983 6802 6701 2 1219 253 356 0 0 chr12 83156593 83156666 -38100864 - MIRc SINE MIR -112 156 84 2 1219 244 250 0 16 chr12 83158174 83158235 -38099295 - MIRm SINE MIR -4 272 213 2 1219 243 0 0 0 chr12 83158609 83158636 -38098894 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1219 580 248 114 71 chr12 83158932 83159066 -38098464 - L1_Mur3 LINE L1 -723 5574 5437 2 1219 711 233 45 55 chr12 83159066 83159266 -38098264 - B3A SINE B2 0 198 1 2 1219 580 248 114 71 chr12 83159266 83159408 -38098122 - L1_Mur3 LINE L1 -861 5436 5285 2 1219 210 118 0 0 chr12 83159408 83159442 -38098088 + (CTG)n Simple_repeat Simple_repeat 2 35 0 2 1219 580 290 126 59 chr12 83159442 83159638 -38097892 - L1_Mur3 LINE L1 -1013 5284 5040 2 1219 423 0 0 0 chr12 83159660 83159707 -38097823 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1219 280 302 132 35 chr12 83159710 83159967 -38097563 - L1_Mur3 LINE L1 -1200 4943 4662 2 1219 315 314 72 40 chr12 83159969 83160324 -38097206 - L1_Mur3 LINE L1 -3613 2530 2146 2 1219 273 236 119 3 chr12 83160307 83160465 -38097065 - L1M5 LINE L1 -296 5888 5703 2 1219 22 0 0 0 chr12 83160504 83160526 -38097004 + AT_rich Low_complexity Low_complexity 1 22 0 2 1219 250 290 69 10 chr12 83160538 83160639 -38096891 + L1M2 LINE L1 4837 4943 -1200 2 1219 580 219 6 6 chr12 83160653 83160818 -38096712 + (TA)n Simple_repeat Simple_repeat 1 165 0 2 1219 7295 71 9 35 chr12 83162078 83163240 -38094290 - L1_Mus1 LINE L1 0 6567 5470 2 1219 225 94 0 0 chr12 83163294 83163326 -38094204 + (ATGGTG)n Simple_repeat Simple_repeat 1 32 0 2 1219 485 287 118 25 chr12 83163326 83163487 -38094043 + MER3 DNA MER1_type 25 200 -9 2 1219 914 124 15 0 chr12 83163832 83163969 -38093561 - B1_Mus1 SINE Alu 0 148 10 2 1219 416 212 0 117 chr12 83163867 83163995 -38093535 - MT2B LTR ERVL -337 264 152 2 1219 1157 212 20 177 chr12 83165239 83165685 -38091845 + RMER17C LTR ERVK 1 376 -34 2 1219 232 231 0 0 chr12 83165689 83165741 -38091789 - L1M5 LINE L1 -453 5725 5674 2 1219 300 335 67 11 chr12 83165768 83165946 -38091584 - L2 LINE L2 -353 3066 2879 2 1219 247 80 0 57 chr12 83165946 83165999 -38091531 + (CCCCCA)n Simple_repeat Simple_repeat 4 53 0 2 1219 920 225 109 27 chr12 83166925 83167181 -38090349 + B4A SINE B4 2 278 -14 2 1219 342 0 0 0 chr12 83167203 83167241 -38090289 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1219 279 0 0 0 chr12 83167412 83167443 -38090087 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1219 502 255 78 0 chr12 83167878 83167980 -38089550 + B1_Mur1 SINE Alu 3 112 -37 2 1219 402 152 261 0 chr12 83167993 83168085 -38089445 + ORR1A2 LTR MaLR 37 152 -222 2 1219 4280 92 58 3 chr12 83168090 83168714 -38088816 + ORR1A2-int LTR MaLR 900 1557 -406 2 1219 1410 97 0 0 chr12 83168711 83168906 -38088624 + ORR1A2-int LTR MaLR 1769 1963 0 2 1219 2170 117 3 52 chr12 83168906 83169250 -38088280 + ORR1A2 LTR MaLR 1 327 0 2 1219 289 155 86 123 chr12 83169250 83169270 -38088260 + ORR1B1 LTR MaLR 71 92 -302 2 1219 221 61 0 57 chr12 83169270 83169285 -38088245 + PB1D9 SINE Alu 86 118 -2 2 1219 189 94 0 0 chr12 83169286 83169318 -38088212 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1219 781 182 123 17 chr12 83169735 83169914 -38087616 - B3A SINE B2 0 198 1 2 1219 205 51 0 49 chr12 83169999 83170040 -38087490 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1219 1167 58 0 0 chr12 83170040 83170178 -38087352 - B1_Mus2 SINE Alu -9 138 1 2 1219 438 267 86 0 chr12 83170216 83170332 -38087198 - ID_B1 SINE B4 0 224 99 2 1219 884 79 11 43 chr12 83171039 83171225 -38086305 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1219 258 106 0 0 chr12 83171244 83171291 -38086239 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 2 1219 1047 200 18 9 chr12 83171556 83171778 -38085752 - URR1B DNA MER1_type 0 225 2 2 1219 199 259 106 0 chr12 83171802 83171887 -38085643 + L3 LINE CR1 4203 4296 -193 2 1219 638 238 20 13 chr12 83171941 83172090 -38085440 - MLT2B4 LTR ERVL -406 150 1 2 1219 1192 65 0 0 chr12 83172100 83172253 -38085277 + B2_Mm2 SINE B2 1 153 -42 2 1219 528 16 0 0 chr12 83172253 83172314 -38085216 + (CATA)n Simple_repeat Simple_repeat 4 64 0 3 1219 206 241 25 12 chr12 83172426 83172455 -38085075 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1219 1260 20 0 26 chr12 83172455 83172607 -38084923 + B1_Mus1 SINE Alu 1 148 0 3 1219 206 241 25 12 chr12 83172607 83172657 -38084873 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 3 1219 356 310 39 52 chr12 83172789 83172942 -38084588 - MIR SINE MIR -61 201 51 3 1219 319 231 9 9 chr12 83172994 83173103 -38084427 + CT-rich Low_complexity Low_complexity 2 110 0 3 1219 303 302 77 54 chr12 83174528 83174696 -38082834 + MER5A DNA MER1_type 8 179 -10 3 1219 1006 243 23 27 chr12 83175674 83175894 -38081636 - B4A SINE B4 -60 232 14 3 1219 816 141 0 0 chr12 83176107 83176242 -38081288 + (TATATG)n Simple_repeat Simple_repeat 2 136 0 3 1219 360 0 0 0 chr12 83176328 83176368 -38081162 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1219 375 23 0 0 chr12 83176368 83176411 -38081119 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1219 442 209 143 0 chr12 83176464 83176569 -38080961 + PB1D7 SINE Alu 1 120 0 3 1219 309 70 0 50 chr12 83177363 83177423 -38080107 + (TCTCCC)n Simple_repeat Simple_repeat 2 58 0 3 1219 237 65 0 0 chr12 83177639 83177670 -38079860 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1219 291 211 115 26 chr12 83177681 83177759 -38079771 - PB1D7 SINE Alu 0 120 36 3 1219 554 226 133 17 chr12 83178086 83178266 -38079264 - L1MA8 LINE L1 -1 6290 6090 3 1219 490 193 205 0 chr12 83178446 83178617 -38078913 - ID_B1 SINE B4 -17 207 2 3 1219 675 250 7 0 chr12 83178630 83178770 -38078760 - B1F SINE Alu -8 141 1 3 1219 263 225 132 36 chr12 83179933 83180016 -38077514 + MTE2a LTR MaLR 1 91 -288 3 1219 287 171 23 186 chr12 83180018 83180061 -38077469 + MTE2a LTR MaLR 306 336 -43 3 1219 1169 196 5 14 chr12 83180061 83180278 -38077252 - B3 SINE B2 0 216 2 3 1219 287 171 23 186 chr12 83180278 83180320 -38077210 + MTE2a LTR MaLR 337 377 -2 3 1219 270 279 134 79 chr12 83180971 83181173 -38076357 - MTEb LTR MaLR -4 375 163 3 1219 261 305 41 21 chr12 83181850 83181947 -38075583 - MLT1E2 LTR MaLR -2 625 527 3 1219 1092 246 74 96 chr12 83181949 83182313 -38075217 + ORR1E LTR MaLR 2 357 -2 3 1219 459 158 0 26 chr12 83182496 83182574 -38074956 + ID_B1 SINE B4 126 201 -23 3 1219 1086 165 40 0 chr12 83182875 83183051 -38074479 + ORR1D1 LTR MaLR 1 183 -191 3 1219 204 325 0 0 chr12 83183059 83183142 -38074388 + C-rich Low_complexity Low_complexity 1 83 0 3 1219 1016 171 15 35 chr12 83183153 83183353 -38074177 + ORR1D1 LTR MaLR 167 362 -12 3 1219 5388 107 41 35 chr12 83183450 83183504 -38074026 - Lx2B LINE L1 -555 6445 6392 3 1219 279 0 0 0 chr12 83183504 83183535 -38073995 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1219 1244 35 0 0 chr12 83183538 83183680 -38073850 - B1_Mus1 SINE Alu -6 142 1 3 1219 5388 115 29 26 chr12 83183680 83184796 -38072734 - Lx2B LINE L1 -609 6391 5266 3 1219 201 241 22 33 chr12 83185264 83185444 -38072086 + (TATG)n Simple_repeat Simple_repeat 3 180 0 3 1219 272 196 40 34 chr12 83185402 83185550 -38071980 + (TATATG)n Simple_repeat Simple_repeat 3 151 0 3 1219 209 197 38 38 chr12 83185567 83185646 -38071884 + (TATG)n Simple_repeat Simple_repeat 2 80 0 3 1219 639 249 226 26 chr12 83185659 83185893 -38071637 - B4A SINE B4 -11 281 1 3 1219 2664 114 17 87 chr12 83186227 83186689 -38070841 - RLTR23 LTR ERV1 0 430 1 3 1219 300 219 11 99 chr12 83188223 83188314 -38069216 - MLT1I LTR MaLR 0 411 329 3 1219 239 226 0 46 chr12 83188353 83188418 -38069112 + (TATG)n Simple_repeat Simple_repeat 4 65 0 3 1219 2514 182 53 4 chr12 83188560 83188598 -38068932 - MT2A LTR ERVL 0 533 495 3 1219 207 0 0 0 chr12 83188598 83188621 -38068909 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 3 1219 2514 182 53 4 chr12 83188621 83189090 -38068440 - MT2A LTR ERVL -39 494 2 3 1219 1188 62 0 0 chr12 83189117 83189262 -38068268 + B1_Mm SINE Alu 1 145 -2 3 1219 866 212 37 65 chr12 83189292 83189509 -38068021 - B3 SINE B2 0 216 6 3 1219 708 185 0 0 chr12 83189652 83189771 -38067759 - PB1D9 SINE Alu 0 120 2 3 1219 807 244 28 32 chr12 83190396 83190612 -38066918 - B3 SINE B2 0 216 2 3 1219 240 173 0 103 chr12 83190945 83190992 -38066538 - MLT1A1 LTR MaLR -2 406 362 3 1219 789 90 0 0 chr12 83190992 83191103 -38066427 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 3 1219 356 73 54 18 chr12 83191113 83191159 -38066371 - B2_Mm2 SINE B2 -14 181 124 3 1219 2925 164 78 8 chr12 83191159 83191255 -38066275 - RLTR20B2 LTR ERVK 0 560 465 3 1219 423 0 0 0 chr12 83191255 83191302 -38066228 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1219 2925 164 78 8 chr12 83191302 83191728 -38065802 - RLTR20B2 LTR ERVK -96 464 2 3 1219 792 96 79 8 chr12 83191728 83191845 -38065685 - B2_Mm2 SINE B2 -67 128 3 3 1219 284 213 66 13 chr12 83191845 83191919 -38065611 - MLT1A1 LTR MaLR -36 372 295 3 1219 318 191 200 11 chr12 83191994 83192077 -38065453 + MTEb LTR MaLR 1 101 -278 3 1219 731 286 11 27 chr12 83192077 83192260 -38065270 + B3A SINE B2 2 181 -17 3 1219 644 215 117 17 chr12 83192347 83192527 -38065003 + B3A SINE B2 1 198 0 3 1219 459 101 0 0 chr12 83192574 83192653 -38064877 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 1219 458 243 79 2 chr12 83192664 83192798 -38064732 + MTEb LTR MaLR 226 379 0 3 1219 244 323 0 86 chr12 83193144 83193249 -38064281 + Tigger12A DNA MER2_type 608 703 -88 3 1219 269 358 88 15 chr12 83195263 83195399 -38062131 - B4A SINE B4 -8 284 139 3 1219 226 351 99 0 chr12 83195507 83195658 -38061872 - MIRb SINE MIR -82 186 21 3 1219 787 228 150 21 chr12 83195812 83196005 -38061525 + B4 SINE B4 6 223 -69 3 1219 1060 177 64 0 chr12 83196044 83196247 -38061283 + B3 SINE B2 1 216 0 3 1219 281 278 67 0 chr12 83196407 83196497 -38061033 + MLT1A0 LTR MaLR 8 103 -262 3 1219 695 318 31 5 chr12 83196534 83196730 -38060800 + MLT1A0 LTR MaLR 165 365 0 3 1219 718 296 11 0 chr12 83197142 83197321 -38060209 + B3A SINE B2 1 181 -17 3 1219 226 348 142 16 chr12 83197399 83197589 -38059941 - MIRb SINE MIR -37 231 18 3 1219 282 260 19 94 chr12 83199126 83199138 -38058392 + MT2B2 LTR ERVL 157 160 -424 3 1219 570 218 10 0 chr12 83199138 83199239 -38058291 + PB1D10 SINE Alu 4 105 -12 3 1219 797 114 73 0 chr12 83200156 83200279 -38057251 + B1_Mur3 SINE Alu 17 148 -1 3 1219 261 0 0 0 chr12 83200283 83200312 -38057218 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 3 1219 384 252 35 56 chr12 83200413 83200556 -38056974 - MLT1A1 LTR MaLR 0 408 269 3 1219 396 40 0 0 chr12 83200633 83200683 -38056847 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1219 804 330 90 15 chr12 83200949 83201556 -38055974 + L1MB3 LINE L1 5505 6169 -14 3 1219 558 171 103 96 chr12 83201564 83201700 -38055830 - B1_Mus1 SINE Alu -1 147 11 3 1219 324 331 60 83 chr12 83201571 83201739 -38055791 - B4 SINE B4 -69 223 60 3 1219 856 196 99 11 chr12 83201925 83202116 -38055414 + B3 SINE B2 5 212 -4 3 1219 345 141 0 0 chr12 83204456 83204527 -38053003 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1219 274 275 135 15 chr12 83204624 83204757 -38052773 + B1F1 SINE Alu 1 149 0 3 1219 22 22 0 62 chr12 83204759 83204807 -38052723 + AT_rich Low_complexity Low_complexity 1 45 0 3 1219 380 338 33 20 chr12 83204839 83204990 -38052540 - RSINE1 SINE B4 -9 156 4 3 1219 312 281 31 20 chr12 83207254 83207352 -38050178 + ORR1E LTR MaLR 8 106 -253 3 1219 243 293 71 71 chr12 83208083 83208252 -38049278 - MLT1L LTR MaLR -293 317 149 3 1219 716 201 14 0 chr12 83209912 83210051 -38047479 + B1_Mur2 SINE Alu 5 145 -4 3 1219 194 116 23 0 chr12 83210052 83210095 -38047435 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 3 1219 254 234 129 69 chr12 83210255 83210356 -38047174 + MT2B LTR ERVL 158 264 -337 3 1219 698 133 132 8 chr12 83210269 83210390 -38047140 + B1_Mur3 SINE Alu 12 147 -2 3 1219 331 309 86 22 chr12 83210881 83211020 -38046510 - MER5B DNA MER1_type -30 148 1 3 1219 564 15 0 0 chr12 83211179 83211244 -38046286 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1219 291 71 0 0 chr12 83211610 83211652 -38045878 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1219 446 242 15 8 chr12 83211681 83211798 -38045732 + L1MD LINE L1 5168 5283 -863 3 1219 351 0 0 0 chr12 83211798 83211837 -38045693 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1219 1416 253 124 25 chr12 83211837 83212426 -38045104 + L1MC3 LINE L1 5308 5954 -1831 3 1219 1058 217 81 65 chr12 83212433 83212754 -38044776 - ORR1D1 LTR MaLR -8 366 41 3 1219 519 281 72 0 chr12 83212794 83212961 -38044569 + L1MC3 LINE L1 5962 6140 -204 3 1219 595 246 182 6 chr12 83213302 83213478 -38044052 + ID_B1 SINE B4 2 208 -16 3 1219 263 234 13 0 chr12 83213495 83213572 -38043958 + (TAGG)n Simple_repeat Simple_repeat 3 80 0 3 1219 298 147 29 0 chr12 83213574 83213642 -38043888 + GA-rich Low_complexity Low_complexity 1 70 0 3 1219 263 175 18 0 chr12 83214992 83215049 -38042481 + GA-rich Low_complexity Low_complexity 1 58 0 3 1219 601 290 37 12 chr12 83215050 83215214 -38042316 - B3A SINE B2 -30 168 1 3 1219 425 190 51 0 chr12 83215535 83215614 -38041916 - RLTR20A LTR ERVK -458 83 1 3 1219 702 163 54 82 chr12 83216179 83216326 -38041204 - B1_Mus2 SINE Alu -1 148 6 3 1219 396 235 152 76 chr12 83216203 83216401 -38041129 - B4 SINE B4 -79 213 1 3 1219 364 329 103 0 chr12 83216480 83216626 -38040904 - RSINE1 SINE B4 -2 163 3 3 1219 312 275 200 51 chr12 83217332 83217547 -38039983 - L3 LINE CR1 -22 4467 4221 3 1219 285 188 75 0 chr12 83217652 83217732 -38039798 + L1MB3 LINE L1 6092 6177 -6 3 1219 1067 256 44 11 chr12 83217763 83218035 -38039495 + B4 SINE B4 12 292 0 3 1219 1429 77 16 5 chr12 83218481 83218665 -38038865 - B2_Mm2 SINE B2 -8 187 2 3 1219 24 0 0 0 chr12 83218673 83218697 -38038833 + AT_rich Low_complexity Low_complexity 1 24 0 4 1219 240 260 97 80 chr12 83219160 83219273 -38038257 - ORR1E LTR MaLR -220 139 25 4 1219 447 19 0 0 chr12 83219805 83219857 -38037673 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1219 239 429 12 12 chr12 83220140 83220310 -38037220 + MIRb SINE MIR 21 190 -78 4 1219 486 0 0 0 chr12 83220508 83220562 -38036968 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1219 238 169 191 44 chr12 83220575 83220643 -38036887 + PB1 SINE Alu 50 127 0 4 1219 1989 168 114 5 chr12 83220678 83221056 -38036474 - MTC LTR MaLR 0 421 3 4 1219 238 269 12 25 chr12 83221495 83221575 -38035955 + RSINE1 SINE B4 4 82 -142 4 1219 297 0 0 0 chr12 83221919 83221952 -38035578 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 1219 392 124 0 5 chr12 83221967 83222032 -38035498 - B2_Mm2 SINE B2 -107 109 47 4 1219 1151 122 35 0 chr12 83222064 83222236 -38035294 - B2_Mm1t SINE B2 -14 179 2 4 1219 1924 117 171 6 chr12 83222567 83222919 -38034611 + RMER17C LTR ERVK 1 410 0 4 1219 537 232 98 29 chr12 83223194 83223367 -38034163 + B2_Mm2 SINE B2 6 190 -5 4 1219 262 273 47 66 chr12 83223470 83223576 -38033954 + L2a LINE L2 3279 3382 -44 4 1219 6327 57 22 4 chr12 83224275 83225081 -38032449 - Lx3_Mus LINE L1 0 7009 6189 4 1219 823 60 174 6 chr12 83225085 83225252 -38032278 + Lx3_Mus LINE L1 6004 6198 -811 4 1219 198 0 0 0 chr12 83225428 83225450 -38032080 + (CAA)n Simple_repeat Simple_repeat 2 23 0 4 1219 684 217 6 60 chr12 83225612 83225779 -38031751 - ID_B1 SINE B4 -1 223 66 4 1219 519 284 112 0 chr12 83225979 83226148 -38031382 + B4A SINE B4 82 269 -23 4 1219 198 103 0 0 chr12 83226148 83226177 -38031353 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1219 502 41 27 0 chr12 83226698 83226771 -38030759 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 4 1219 337 310 34 34 chr12 83226794 83226941 -38030589 - B1F1 SINE Alu -2 147 1 4 1219 500 288 138 20 chr12 83226991 83227186 -38030344 + MER20 DNA MER1_type 2 219 0 4 1219 1173 235 36 32 chr12 83227239 83227516 -38030014 + B4A SINE B4 15 292 0 4 1219 237 345 8 121 chr12 83227488 83227620 -38029910 - RMER12 LTR ERVK -486 836 720 4 1219 380 310 111 53 chr12 83227840 83228048 -38029482 + MIR SINE MIR 31 250 -12 4 1219 990 167 0 0 chr12 83228245 83228425 -38029105 + CT-rich Low_complexity Low_complexity 1 180 0 4 1219 338 206 115 16 chr12 83228449 83228563 -38028967 - PB1D9 SINE Alu 0 150 34 4 1219 394 338 7 26 chr12 83228572 83228724 -38028806 - B1F2 SINE Alu 0 149 1 4 1219 240 111 0 0 chr12 83229388 83229424 -38028106 + (TGG)n Simple_repeat Simple_repeat 1 36 0 4 1219 324 120 0 0 chr12 83229427 83229477 -38028053 + (TTG)n Simple_repeat Simple_repeat 1 50 0 4 1219 473 177 145 0 chr12 83229790 83229914 -38027616 + B1F SINE Alu 3 144 -5 4 1220 441 0 0 0 chr12 83230915 83230964 -38026566 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1220 237 119 0 0 chr12 83230965 83231007 -38026523 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1220 222 344 0 0 chr12 83231046 83231107 -38026423 + polypurine Low_complexity Low_complexity 4 64 0 4 1220 518 338 7 0 chr12 83231645 83231784 -38025746 + ID_B1 SINE B4 79 218 -6 4 1220 360 64 0 0 chr12 83232675 83232722 -38024808 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1220 560 289 35 7 chr12 83232723 83232866 -38024664 - B3A SINE B2 -46 152 6 4 1220 791 216 30 64 chr12 83232877 83233080 -38024450 - B3A SINE B2 0 198 3 4 1220 669 214 16 0 chr12 83233165 83233291 -38024239 - B1_Mur1 SINE Alu -7 142 15 4 1220 273 365 26 20 chr12 83233293 83233444 -38024086 - MIRc SINE MIR -94 174 23 4 1220 318 302 224 39 chr12 83233617 83233975 -38023555 + L3 LINE CR1 3755 4178 -311 4 1220 243 0 0 0 chr12 83234228 83234255 -38023275 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1220 874 183 83 0 chr12 83234263 83234415 -38023115 + B2_Mm2 SINE B2 1 158 -37 4 1220 228 35 0 0 chr12 83234415 83234444 -38023086 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 4 1220 874 183 83 0 chr12 83234444 83234471 -38023059 + B2_Mm2 SINE B2 159 194 -1 4 1220 677 210 264 6 chr12 83234790 83234953 -38022577 + B3 SINE B2 1 205 -11 4 1220 486 88 0 0 chr12 83234953 83235021 -38022509 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 4 1220 535 220 168 29 chr12 83235052 83235225 -38022305 + B3A SINE B2 2 198 0 4 1220 257 341 0 23 chr12 83235420 83235507 -38022023 + PB1D10 SINE Alu 13 97 -20 4 1220 2216 141 81 18 chr12 83235527 83235923 -38021607 - MTC LTR MaLR 0 421 1 4 1220 1188 54 0 13 chr12 83235966 83236116 -38021414 + B1_Mus1 SINE Alu 1 148 0 4 1220 189 107 0 0 chr12 83236117 83236145 -38021385 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1220 380 326 91 0 chr12 83236342 83236474 -38021056 + B1F2 SINE Alu 6 149 0 4 1220 2990 180 94 16 chr12 83236571 83237335 -38020195 + RMER19B LTR ERVK 1 902 0 4 1220 226 296 100 18 chr12 83237692 83237802 -38019728 - MLT1D LTR MaLR -79 426 308 4 1220 362 322 52 78 chr12 83238931 83239123 -38018407 - LTR81B LTR ERV1? -982 411 225 4 1220 227 329 41 0 chr12 83239511 83239584 -38017946 - L2a LINE L2 -1 3425 3350 4 1220 26 0 0 0 chr12 83239760 83239786 -38017744 + AT_rich Low_complexity Low_complexity 1 26 0 4 1220 1204 54 0 13 chr12 83239786 83239935 -38017595 - B1_Mm SINE Alu 0 147 1 4 1220 917 237 16 0 chr12 83239949 83240135 -38017395 - B3 SINE B2 -27 189 1 4 1220 350 267 104 65 chr12 83241107 83241294 -38016236 - RLTR12B LTR ERVK -272 256 73 4 1220 296 338 27 95 chr12 83241293 83241440 -38016090 - RSINE1 SINE B4 -26 139 3 4 1220 243 269 14 29 chr12 83241479 83241548 -38015982 - B3A SINE B2 0 198 131 4 1220 720 245 0 0 chr12 83241658 83241797 -38015733 + B1_Mur1 SINE Alu 5 143 -6 4 1220 810 284 30 10 chr12 83241822 83242021 -38015509 + B3 SINE B2 14 216 0 4 1220 384 22 0 0 chr12 83242470 83242515 -38015015 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1220 1946 176 47 6 chr12 83242859 83243224 -38014306 + RLTR14 LTR ERV1 3 382 0 4 1220 242 152 80 0 chr12 83243299 83243365 -38014165 + ID4 SINE ID 5 82 -1 4 1220 810 254 73 34 chr12 83243435 83243639 -38013891 - B3 SINE B2 -2 214 3 4 1220 322 361 39 85 chr12 83243643 83243858 -38013672 - L1ME3A LINE L1 -5 6168 5963 4 1220 521 194 35 104 chr12 83243858 83244016 -38013514 + MER5A DNA MER1_type 2 149 -40 4 1220 1641 47 0 0 chr12 83244016 83244208 -38013322 - B2_Mm1a SINE B2 0 193 2 4 1220 521 194 35 104 chr12 83244208 83244250 -38013280 + MER5A DNA MER1_type 150 188 -1 4 1220 322 361 39 85 chr12 83244250 83244294 -38013236 - L1ME3A LINE L1 -211 5962 5921 4 1220 487 304 14 0 chr12 83244457 83244595 -38012935 - L1MC5 LINE L1 -533 7428 7289 4 1220 513 291 138 54 chr12 83244784 83245154 -38012376 - L1MC5 LINE L1 -911 7050 6650 4 1220 766 224 52 28 chr12 83245173 83245384 -38012146 - B3 SINE B2 0 216 1 4 1220 1360 257 159 31 chr12 83245441 83245474 -38012056 - MLT1F LTR MaLR -16 532 505 4 1220 601 201 117 22 chr12 83245474 83245611 -38011919 - B1_Mur4 SINE Alu 0 150 1 4 1220 1360 257 159 31 chr12 83245611 83246030 -38011500 - MLT1F LTR MaLR -44 504 22 4 1220 1378 117 33 124 chr12 83246055 83246444 -38011086 - ORR1A4 LTR MaLR -6 388 1 4 1220 751 258 37 21 chr12 83246444 83246634 -38010896 - ORR1D2 LTR MaLR -177 193 1 4 1220 713 304 98 30 chr12 83246831 83247237 -38010293 - LTR16B LTR ERVL -2 461 10 4 1220 625 239 29 7 chr12 83247610 83247749 -38009781 + B4 SINE B4 145 286 -6 4 1220 220 306 231 0 chr12 83249882 83249990 -38007540 + MER5A DNA MER1_type 17 149 -40 4 1220 324 0 0 0 chr12 83250567 83250603 -38006927 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1220 279 341 0 0 chr12 83250826 83250914 -38006616 + L1MA4 LINE L1 5831 5918 -382 4 1220 738 300 33 89 chr12 83250947 83251256 -38006274 + B4 SINE B4 6 282 -10 4 1220 259 338 0 0 chr12 83251308 83251376 -38006154 + B4 SINE B4 222 289 -3 4 1220 597 93 116 0 chr12 83251454 83251540 -38005990 + 5S rRNA rRNA 1 96 -25 4 1220 306 0 0 0 chr12 83251848 83251882 -38005648 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1220 1702 207 22 22 chr12 83253756 83253984 -38003546 + ORR1D1 LTR MaLR 1 231 -143 4 1220 333 0 0 0 chr12 83253984 83254021 -38003509 + (CCTG)n Simple_repeat Simple_repeat 4 40 0 4 1220 1702 207 22 22 chr12 83254021 83254158 -38003372 + ORR1D1 LTR MaLR 232 365 -9 4 1220 979 134 0 13 chr12 83254188 83254339 -38003191 + B1_Mur3 SINE Alu 1 149 0 4 1220 251 387 97 27 chr12 83254372 83254560 -38002970 + MIR SINE MIR 13 219 -49 4 1220 390 299 25 8 chr12 83254661 83254779 -38002751 + PB1 SINE Alu 1 120 -7 4 1220 1162 88 0 0 chr12 83254913 83255060 -38002470 + B1_Mus1 SINE Alu 2 148 0 4 1220 198 0 0 0 chr12 83255063 83255085 -38002445 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 4 1220 402 74 0 0 chr12 83256024 83256078 -38001452 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 4 1220 24 0 0 0 chr12 83256762 83256786 -38000744 + AT_rich Low_complexity Low_complexity 1 24 0 4 1220 338 215 41 51 chr12 83256965 83257063 -38000467 + MLT1H LTR MaLR 148 244 -305 4 1220 271 279 138 118 chr12 83257120 83257315 -38000215 + MLT1H LTR MaLR 326 595 0 4 1220 23 0 0 0 chr12 83257432 83257455 -38000075 + AT_rich Low_complexity Low_complexity 1 23 0 4 1220 1503 77 0 5 chr12 83257608 83257804 -37999726 - B2_Mm2 SINE B2 0 195 1 4 1220 205 271 69 28 chr12 83257878 83257950 -37999580 - L2 LINE L2 -1066 2353 2279 4 1220 560 312 19 7 chr12 83258518 83258673 -37998857 + RSINE1 SINE B4 6 162 -3 4 1220 228 370 62 28 chr12 83258523 83258701 -37998829 + B3A SINE B2 10 193 -5 4 1220 1268 266 15 66 chr12 83258897 83259291 -37998239 - MTEa LTR MaLR -2 377 4 5 1220 216 0 0 0 chr12 83260089 83260113 -37997417 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1220 664 269 0 0 chr12 83260122 83260267 -37997263 + B1_Mur1 SINE Alu 1 145 -4 5 1220 216 296 0 80 chr12 83260310 83260398 -37997132 - MIRb SINE MIR -149 119 39 5 1220 303 333 65 65 chr12 83260913 83261083 -37996447 + B4A SINE B4 123 292 0 5 1220 306 0 0 0 chr12 83261128 83261162 -37996368 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1220 241 24 73 0 chr12 83261329 83261370 -37996160 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1220 222 322 13 14 chr12 83261575 83261654 -37995876 + ID2 SINE ID 6 84 -68 5 1220 324 70 0 0 chr12 83262912 83262955 -37994575 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 5 1220 738 341 55 50 chr12 83263014 83263415 -37994115 - MLT1D LTR MaLR -58 447 45 5 1220 313 299 18 18 chr12 83263478 83263587 -37993943 + PB1 SINE Alu 1 109 -18 5 1220 375 294 104 35 chr12 83264120 83264321 -37993209 - LTR33A_ LTR ERVL -260 271 57 5 1220 391 310 43 25 chr12 83264360 83264522 -37993008 - L2a LINE L2 -289 3137 2973 5 1220 258 312 0 30 chr12 83264537 83264603 -37992927 + MER2 DNA MER2_type 2 65 -280 5 1220 1340 5 11 27 chr12 83264608 83265164 -37992366 + (CA)n Simple_repeat Simple_repeat 1 546 0 5 1220 234 179 18 0 chr12 83265178 83265234 -37992296 + Lx5 LINE L1 6993 7049 -1 5 1220 462 276 111 39 chr12 83265252 83265459 -37992071 + MER2 DNA MER2_type 69 290 -55 5 1220 642 322 164 52 chr12 83265579 83266457 -37991073 - L2a LINE L2 -541 2878 1903 5 1220 2256 106 21 21 chr12 83266549 83266878 -37990652 - ORR1A4 LTR MaLR 0 329 1 5 1220 263 233 219 112 chr12 83266924 83267175 -37990355 + B4 SINE B4 1 278 -14 5 1220 212 339 68 28 chr12 83267203 83267379 -37990151 - L2a LINE L2 -1645 1774 1592 5 1220 445 324 91 7 chr12 83268018 83268161 -37989369 + RSINE1 SINE B4 11 165 0 5 1220 215 301 118 82 chr12 83268161 83268187 -37989343 + B2_Mm1a SINE B2 10 184 -9 5 1220 1286 62 11 0 chr12 83268225 83268401 -37989129 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 5 1220 427 269 30 118 chr12 83268930 83269099 -37988431 + RSINE1 SINE B4 12 165 0 5 1220 730 200 156 17 chr12 83269404 83269577 -37987953 - B3 SINE B2 -19 197 1 5 1220 180 0 0 0 chr12 83269695 83269715 -37987815 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 5 1220 205 216 139 102 chr12 83269853 83269961 -37987569 - L2c LINE L2 -1 3386 3275 5 1220 237 178 0 0 chr12 83270355 83270400 -37987130 + GA-rich Low_complexity Low_complexity 3 47 0 5 1220 22 70 0 0 chr12 83270703 83270746 -37986784 + GC_rich Low_complexity Low_complexity 1 43 0 5 1220 22 0 0 0 chr12 83271871 83271893 -37985637 + AT_rich Low_complexity Low_complexity 1 22 0 5 1220 585 214 23 45 chr12 83274573 83274705 -37982825 - B1_Mur1 SINE Alu -5 144 16 5 1220 281 202 17 5 chr12 83275294 83275361 -37982169 - ID2 SINE ID -85 67 2 5 1220 302 182 73 29 chr12 83275633 83275701 -37981829 + ID4_ SINE ID 2 72 -11 5 1220 291 246 0 30 chr12 83275642 83275709 -37981821 + tRNA-Ala-GCY_ tRNA tRNA 10 74 -1 5 1220 589 219 75 23 chr12 83276728 83276901 -37980629 - L1MB3 LINE L1 -146 6037 5856 5 1220 654 114 46 47 chr12 83276976 83277114 -37980416 - B1_Mur4 SINE Alu -7 143 5 5 1220 511 274 103 35 chr12 83277116 83277595 -37979935 - L1MB3 LINE L1 -498 5673 5156 5 1220 939 205 75 0 chr12 83277604 83277804 -37979726 - B3 SINE B2 -1 215 1 5 1220 416 256 91 50 chr12 83277807 83278033 -37979497 - L1MB3 LINE L1 -1103 5043 4793 5 1220 406 223 11 0 chr12 83278493 83278587 -37978943 - B4 SINE B4 -73 219 125 5 1220 845 203 81 30 chr12 83278675 83278873 -37978657 - B3 SINE B2 -6 210 3 5 1220 189 0 0 0 chr12 83279500 83279521 -37978009 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1220 336 102 0 0 chr12 83280262 83280311 -37977219 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1220 1276 34 0 0 chr12 83280311 83280458 -37977072 - B1_Mm SINE Alu 0 147 1 5 1220 1031 177 20 40 chr12 83280500 83280700 -37976830 - B3 SINE B2 -20 196 1 5 1220 342 235 84 32 chr12 83280848 83281002 -37976528 - L2 LINE L2 -845 2574 2413 5 1220 3260 144 10 74 chr12 83281447 83282054 -37975476 + RLTR12A LTR ERVK 1 568 0 5 1220 636 286 24 29 chr12 83282344 83282549 -37974981 + B3 SINE B2 7 210 -6 5 1220 241 269 84 21 chr12 83282736 83282831 -37974699 - ID_B1 SINE B4 -33 191 91 5 1220 2163 152 121 25 chr12 83282918 83283389 -37974141 - RMER19B LTR ERVK -12 890 375 5 1220 1234 124 81 0 chr12 83283416 83283626 -37973904 - RMER19B LTR ERVK -675 227 1 5 1220 612 183 18 35 chr12 83283844 83284006 -37973524 - B3 SINE B2 -6 189 35 5 1220 18569 49 36 6 chr12 83284402 83284930 -37972600 - MusHAL1 LINE L1 0 2712 2186 5 1220 3504 20 5 0 chr12 83284930 83285324 -37972206 - MTA_Mm LTR MaLR 0 396 1 5 1220 18569 49 36 6 chr12 83285324 83287280 -37970250 - MusHAL1 LINE L1 -527 2185 153 5 1220 539 252 69 65 chr12 83287330 83287576 -37969954 - L1MB8 LINE L1 -47 6131 5885 5 1220 519 17 0 0 chr12 83287616 83287676 -37969854 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 5 1220 372 43 0 0 chr12 83287694 83287740 -37969790 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 5 1220 615 192 53 15 chr12 83287740 83287872 -37969658 - B1_Mur2 SINE Alu -12 137 1 5 1220 362 274 0 0 chr12 83288599 83288694 -37968836 - PB1D10 SINE Alu -22 95 1 5 1220 396 0 0 0 chr12 83290902 83290946 -37966584 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1220 545 62 0 0 chr12 83292355 83292436 -37965094 + L1Md_F2 LINE L1 6500 6580 -2 5 1220 257 243 0 63 chr12 83293610 83293689 -37963841 - L1MB8 LINE L1 -178 6000 5927 5 1220 478 305 46 6 chr12 83293722 83293897 -37963633 - RCHARR1 DNA MER1_type -296 678 497 5 1220 465 260 165 6 chr12 83294000 83294170 -37963360 - MTEa LTR MaLR -182 197 1 5 1220 960 267 92 28 chr12 83294170 83294592 -37962938 - RCHARR1 DNA MER1_type -472 502 54 5 1220 187 106 0 60 chr12 83294747 83294797 -37962733 + G-rich Low_complexity Low_complexity 2 48 0 5 1220 522 236 135 22 chr12 83294924 83295102 -37962428 + B3A SINE B2 1 198 0 5 1220 553 217 25 106 chr12 83296635 83296795 -37960735 + B1_Mur1 SINE Alu 2 148 -1 5 1220 279 0 0 0 chr12 83297011 83297042 -37960488 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1220 453 250 100 15 chr12 83297610 83297740 -37959790 + RSINE1 SINE B4 5 145 -20 5 1220 190 273 147 29 chr12 83298359 83298461 -37959069 + L2a LINE L2 3276 3389 -37 5 1220 541 250 23 0 chr12 83299088 83299220 -37958310 - RSINE1 SINE B4 -22 143 9 5 1220 282 235 43 14 chr12 83299552 83299621 -37957909 - B1_Mus2 SINE Alu -72 75 5 5 1220 234 250 17 0 chr12 83299843 83299903 -37957627 - B3 SINE B2 -155 61 1 5 1220 222 204 61 0 chr12 83301283 83301332 -37956198 + B4A SINE B4 84 135 -157 5 1220 642 224 59 21 chr12 83301563 83301750 -37955780 - B3 SINE B2 0 216 23 5 1220 245 257 186 0 chr12 83301758 83301828 -37955702 - ID4_ SINE ID 0 83 1 5 1220 1425 65 16 0 chr12 83301858 83302043 -37955487 + B2_Mm2 SINE B2 2 189 -6 5 1220 509 340 74 49 chr12 83302087 83302372 -37955158 - B4 SINE B4 0 292 1 5 1220 248 307 28 47 chr12 83302372 83302465 -37955065 + B3 SINE B2 113 203 -13 5 1220 216 241 0 0 chr12 83302465 83302523 -37955007 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 5 1220 926 206 98 0 chr12 83302779 83302963 -37954567 - B3 SINE B2 -14 202 1 5 1220 843 83 4 4 chr12 83303188 83303321 -37954209 - B1_Mus1 SINE Alu 0 149 17 5 1220 520 143 12 6 chr12 83303304 83303407 -37954123 - B1_Mus1 SINE Alu -8 109 5 5 1220 206 32 32 0 chr12 83303407 83303438 -37954092 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1220 380 49 31 62 chr12 83303443 83303508 -37954022 + B1_Mur4 SINE Alu 78 140 -10 5 1220 389 0 59 0 chr12 83303508 83303559 -37953971 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1220 409 331 64 8 chr12 83303700 83303825 -37953705 + RSINE1 SINE B4 2 133 -32 5 1220 252 0 0 0 chr12 83303901 83303929 -37953601 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1220 741 181 40 27 chr12 83303929 83304077 -37953453 - B1_Mur4 SINE Alu 0 150 1 5 1220 276 282 133 101 chr12 83305189 83305347 -37952183 - RSINE1 SINE B4 0 165 3 5 1220 336 96 52 52 chr12 83305863 83305940 -37951590 - B1_Mur3 SINE Alu 0 149 73 5 1220 372 22 0 0 chr12 83306293 83306338 -37951192 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 5 1220 1108 63 35 0 chr12 83306522 83306664 -37950866 - B1_Mus1 SINE Alu 0 148 2 5 1220 502 182 246 0 chr12 83306698 83306808 -37950722 + B1_Mur2 SINE Alu 3 139 -10 5 1220 238 333 67 0 chr12 83306855 83306990 -37950540 - L1M3 LINE L1 -1980 4160 4017 5 1220 243 188 0 0 chr12 83306994 83307042 -37950488 + CT-rich Low_complexity Low_complexity 1 48 0 5 1220 234 0 0 0 chr12 83307091 83307117 -37950413 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1220 1350 76 54 5 chr12 83307744 83307930 -37949600 + B2_Mm2 SINE B2 1 195 0 5 1220 879 252 10 10 chr12 83308970 83309178 -37948352 - B3 SINE B2 -7 209 2 5 1220 608 243 128 16 chr12 83310023 83310211 -37947319 - B3 SINE B2 -2 214 6 5 1220 207 0 0 0 chr12 83310246 83310269 -37947261 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 5 1220 982 96 18 5 chr12 83310269 83310424 -37947106 - B1_Mus1 SINE Alu -1 310 6 5 1220 201 241 25 67 chr12 83311666 83311786 -37945744 + (CAATA)n Simple_repeat Simple_repeat 3 117 0 5 1220 232 211 35 17 chr12 83312090 83312148 -37945382 + C-rich Low_complexity Low_complexity 4 62 0 5 1220 1802 300 132 14 chr12 83312148 83312981 -37944549 - Lx8 LINE L1 -354 7119 6189 5 1220 538 310 64 15 chr12 83313209 83313412 -37944118 + ID_B1 SINE B4 2 214 -10 6 1220 353 208 154 24 chr12 83313865 83313988 -37943542 + B3 SINE B2 3 141 -75 6 1220 2664 225 81 12 chr12 83314841 83315524 -37942006 - RMER19A LTR ERVK 0 737 8 6 1220 305 314 99 17 chr12 83315536 83315708 -37941822 - MER33 DNA MER1_type -138 186 1 6 1220 1821 110 0 24 chr12 83316747 83317035 -37940495 + Lx LINE L1 6374 6654 0 6 1220 198 0 0 0 chr12 83317760 83317782 -37939748 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1220 610 223 0 0 chr12 83317995 83318116 -37939414 - Lx7 LINE L1 -379 7317 7197 6 1220 356 209 105 0 chr12 83318646 83318732 -37938798 - B1F SINE Alu -8 141 47 6 1220 1264 228 163 22 chr12 83318997 83319410 -37938120 + RLTR18B LTR ERVK 9 479 -33 6 1220 612 0 0 0 chr12 83321067 83321135 -37936395 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 6 1220 290 26 0 25 chr12 83322098 83322138 -37935392 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 6 1220 321 296 132 7 chr12 83322142 83322278 -37935252 - RSINE1 SINE B4 -10 155 3 6 1220 462 281 6 41 chr12 83323247 83323418 -37934112 - B3A SINE B2 0 198 34 6 1220 464 258 32 0 chr12 83323634 83323687 -37933843 + ID SINE ID 27 83 -141 6 1220 280 264 54 21 chr12 83323687 83323780 -37933750 + PB1 SINE Alu 1 96 -31 6 1220 366 173 0 0 chr12 83324099 83324174 -37933356 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 1220 324 143 0 0 chr12 83325022 83325078 -37932452 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1220 213 39 0 0 chr12 83325078 83325104 -37932426 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 1220 226 333 56 19 chr12 83325265 83325372 -37932158 - B4A SINE B4 -172 120 10 6 1220 494 276 59 7 chr12 83325417 83325570 -37931960 - RSINE1 SINE B4 -3 162 2 6 1220 275 247 13 0 chr12 83325626 83325703 -37931827 - PB1D10 SINE Alu -7 110 33 6 1220 388 286 86 2 chr12 83328307 83328469 -37929061 - B3A SINE B2 -15 201 27 6 1220 356 242 71 0 chr12 83330098 83330197 -37927333 - L1MDa LINE L1 -6236 397 292 6 1220 403 234 231 38 chr12 83330593 83330753 -37926777 - B3A SINE B2 -5 193 3 6 1220 296 327 71 12 chr12 83330754 83331014 -37926516 + L1MC4 LINE L1 7246 7521 -361 6 1220 369 292 65 26 chr12 83331722 83331918 -37925612 - B3A SINE B2 -1 215 15 6 1220 434 277 0 55 chr12 83333929 83334074 -37923456 + B1_Mur1 SINE Alu 13 149 0 6 1220 198 71 0 0 chr12 83334081 83334109 -37923421 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 6 1220 785 238 87 10 chr12 83334259 83334454 -37923076 + B3 SINE B2 1 210 -6 6 1220 694 279 68 25 chr12 83334549 83334828 -37922702 - B4A SINE B4 -1 291 1 6 1220 22 0 0 0 chr12 83335338 83335360 -37922170 + AT_rich Low_complexity Low_complexity 1 22 0 6 1220 762 108 33 8 chr12 83336779 83336901 -37920629 + B1_Mur3 SINE Alu 24 148 -1 6 1220 23 0 0 0 chr12 83337346 83337369 -37920161 + AT_rich Low_complexity Low_complexity 1 23 0 6 1220 22 0 0 0 chr12 83338032 83338054 -37919476 + AT_rich Low_complexity Low_complexity 1 22 0 6 1220 570 233 57 72 chr12 83339179 83339373 -37918157 + B4 SINE B4 102 292 0 6 1220 293 155 0 17 chr12 83340198 83340257 -37917273 + CT-rich Low_complexity Low_complexity 3 60 0 6 1220 344 272 155 0 chr12 83340365 83340468 -37917062 + PB1D7 SINE Alu 2 120 0 6 1220 383 168 11 0 chr12 83340485 83340580 -37916950 + GA-rich Low_complexity Low_complexity 1 96 0 6 1220 217 271 54 45 chr12 83340897 83341009 -37916521 - B1F1 SINE Alu 0 149 37 6 1220 8263 45 3 4 chr12 83342044 83343477 -37914053 - L1Md_F2 LINE L1 0 6582 5152 6 1220 5510 88 30 4 chr12 83343476 83344286 -37913244 + L1Md_F2 LINE L1 4406 5458 -428 6 1220 3766 88 9 13 chr12 83344286 83344815 -37912715 - L1Md_F2 LINE L1 -2 6580 6054 6 1220 4895 145 46 1 chr12 83344815 83345411 -37912119 + L1Md_F2 LINE L1 5459 6051 -531 6 1220 1620 293 147 53 chr12 83345573 83347668 -37909862 - L1M4c LINE L1 -1119 5257 2942 6 1220 382 302 98 29 chr12 83348019 83348193 -37909337 - L1M4c LINE L1 -5826 558 373 6 1220 372 301 135 14 chr12 83348943 83349165 -37908365 - L1M4c LINE L1 -6111 273 25 6 1220 429 113 28 0 chr12 83350543 83350614 -37906916 - ORR1C2 LTR MaLR 0 384 312 6 1220 1440 162 31 72 chr12 83350712 83350847 -37906683 - ORR1C2 LTR MaLR -78 306 167 6 1220 447 19 0 0 chr12 83350847 83350899 -37906631 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1220 1440 162 31 72 chr12 83350899 83351082 -37906448 - ORR1C2 LTR MaLR -218 166 1 6 1220 1071 175 93 122 chr12 83351334 83351679 -37905851 - RLTR18B LTR ERVK -177 335 1 6 1220 819 275 44 32 chr12 83351679 83351927 -37905603 + ORR1D2 LTR MaLR 120 370 0 6 1220 239 188 0 0 chr12 83352793 83352841 -37904689 + MLT1A1 LTR MaLR 349 396 -12 6 1220 297 250 42 74 chr12 83353157 83353252 -37904278 - ID_B1 SINE B4 -3 221 130 6 1220 221 256 48 71 chr12 83354629 83354713 -37902817 - ID4_ SINE ID 0 83 2 6 1220 201 147 0 0 chr12 83355367 83355401 -37902129 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1220 818 176 0 27 chr12 83355767 83355913 -37901617 + B1_Mus2 SINE Alu 1 142 -5 6 1220 21 0 0 0 chr12 83355922 83355943 -37901587 + AT_rich Low_complexity Low_complexity 1 21 0 6 1220 2113 118 3 59 chr12 83356490 83356831 -37900699 + ORR1A3 LTR MaLR 5 326 0 6 1220 1037 256 114 13 chr12 83357232 83357608 -37899922 - RMER5 LTR ERV1 -7 527 114 6 1220 417 223 32 11 chr12 83358312 83358407 -37899123 + B1_Mur2 SINE Alu 2 98 -51 6 1220 493 180 10 39 chr12 83358463 83358567 -37898963 + B1_Mur4 SINE Alu 1 101 -49 6 1220 28 71 0 0 chr12 83359692 83359748 -37897782 + AT_rich Low_complexity Low_complexity 1 56 0 6 1220 459 78 0 0 chr12 83360137 83360201 -37897329 + (TATG)n Simple_repeat Simple_repeat 4 67 0 6 1220 551 256 59 15 chr12 83360201 83360336 -37897194 - RSINE1 SINE B4 -23 142 2 6 1220 328 302 92 12 chr12 83361522 83361699 -37895831 - B4 SINE B4 -93 199 10 6 152 646 196 38 0 chr12 83361732 83361865 -37895665 + B1_Mur4 SINE Alu 7 144 -6 6 1221 698 62 10 0 chr12 83361866 83361962 -37895568 + (TTTTC)n Simple_repeat Simple_repeat 2 98 0 6 1221 1162 68 7 0 chr12 83362097 83362243 -37895287 - B1_Mus2 SINE Alu 0 147 1 6 1221 204 67 0 0 chr12 83362252 83362282 -37895248 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6 1221 1010 202 63 15 chr12 83362491 83362697 -37894833 - B3 SINE B2 0 216 1 6 1221 558 280 179 43 chr12 83364135 83364527 -37893003 - RMER5 LTR ERV1 0 534 90 6 1221 1193 68 0 0 chr12 83365866 83366013 -37891517 - B1_Mus1 SINE Alu 0 148 2 6 1221 625 234 36 7 chr12 83366360 83366498 -37891032 + B1_Mur1 SINE Alu 8 149 0 6 1221 227 271 0 0 chr12 83367428 83367487 -37890043 - MIRb SINE MIR -170 98 40 6 1221 326 277 83 8 chr12 83370474 83370514 -37887016 - B3A SINE B2 -7 191 153 6 1221 207 0 0 0 chr12 83370514 83370537 -37886993 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 6 1221 326 277 83 8 chr12 83370537 83370616 -37886914 - B3A SINE B2 -46 152 64 6 1221 239 269 9 71 chr12 83370712 83370824 -37886706 - BC1_Mm scRNA scRNA -32 120 16 6 1221 564 89 0 0 chr12 83370909 83370988 -37886542 + (TTTC)n Simple_repeat Simple_repeat 4 82 0 6 1221 1434 83 16 5 chr12 83370988 83371181 -37886349 - B2_Mm2 SINE B2 0 195 1 6 1221 622 169 42 0 chr12 83371282 83371400 -37886130 - B1_Mur2 SINE Alu -26 123 1 6 1221 330 45 0 0 chr12 83371746 83371790 -37885740 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 6 1221 1134 63 0 0 chr12 83371790 83371923 -37885607 - B1_Mus2 SINE Alu -12 135 3 6 1221 273 286 37 19 chr12 83372816 83372923 -37884607 + Charlie7 DNA MER1_type 413 521 -2091 6 1221 564 228 73 95 chr12 83372966 83373145 -37884385 + B3A SINE B2 2 176 -19 6 1221 449 71 14 0 chr12 83374207 83374277 -37883253 + (TTAGGG)n Simple_repeat Simple_repeat 1 71 0 6 1221 1210 124 11 16 chr12 83374567 83374756 -37882774 - B2_Mm2 SINE B2 -3 192 5 6 1221 22 0 0 0 chr12 83374788 83374810 -37882720 + AT_rich Low_complexity Low_complexity 1 22 0 6 1221 442 191 142 26 chr12 83374810 83374923 -37882607 - B1_Mur1 SINE Alu -7 142 17 6 1221 25 31 0 0 chr12 83374923 83374955 -37882575 + AT_rich Low_complexity Low_complexity 1 32 0 6 1221 264 290 41 47 chr12 83374982 83375152 -37882378 - L1M4 LINE L1 -955 5191 5023 6 1221 360 0 0 0 chr12 83375296 83375336 -37882194 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 6 1221 715 298 68 31 chr12 83375337 83375662 -37881868 - ORR1E LTR MaLR -18 341 5 6 1221 1104 162 17 61 chr12 83376025 83376255 -37881275 + Lx4A LINE L1 6836 7055 -3 6 1221 23 54 0 0 chr12 83376255 83376292 -37881238 + AT_rich Low_complexity Low_complexity 1 37 0 6 1221 900 116 72 0 chr12 83376582 83376720 -37880810 + B1_Mus1 SINE Alu 1 148 0 6 1221 1422 239 82 8 chr12 83377983 83378363 -37879167 + MTD LTR MaLR 1 408 -11 6 1221 3234 27 53 0 chr12 83378520 83378896 -37878634 + MTA_Mm LTR MaLR 1 396 0 6 1221 302 336 35 0 chr12 83379707 83379723 -37877807 - ID_B1 SINE B4 -9 215 96 6 1221 392 270 50 0 chr12 83379723 83379823 -37877707 - B1F SINE Alu -30 119 15 6 1221 609 14 0 0 chr12 83382185 83382255 -37875275 + (TCG)n Simple_repeat Simple_repeat 2 71 0 6 1221 324 0 0 0 chr12 83382255 83382291 -37875239 + (TCC)n Simple_repeat Simple_repeat 2 37 0 6 1221 1257 69 0 0 chr12 83382292 83382690 -37874840 + (TTC)n Simple_repeat Simple_repeat 1 398 0 6 1221 1323 78 0 0 chr12 83382702 83383061 -37874469 + (TTC)n Simple_repeat Simple_repeat 1 359 0 6 1221 1230 73 0 0 chr12 83383074 83383253 -37874277 + (TTC)n Simple_repeat Simple_repeat 2 180 0 6 1221 556 123 12 35 chr12 83383254 83383266 -37874264 + polypyrimidine Low_complexity Low_complexity 154 165 0 6 1221 1268 50 0 11 chr12 83383266 83383448 -37874082 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1221 556 123 12 35 chr12 83383448 83383511 -37874019 + polypyrimidine Low_complexity Low_complexity 91 153 0 6 1221 1323 50 0 0 chr12 83383511 83383691 -37873839 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1221 556 123 12 35 chr12 83383691 83383704 -37873826 + polypyrimidine Low_complexity Low_complexity 79 90 0 7 1221 1257 52 0 0 chr12 83383704 83383934 -37873596 + (TTC)n Simple_repeat Simple_repeat 1 230 0 7 1221 556 123 12 35 chr12 83383934 83383946 -37873584 + polypyrimidine Low_complexity Low_complexity 67 78 0 7 1221 1422 33 0 0 chr12 83383946 83384126 -37873404 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1221 556 123 12 35 chr12 83384126 83384189 -37873341 + polypyrimidine Low_complexity Low_complexity 2 66 0 7 1221 183 80 0 0 chr12 83384191 83384216 -37873314 + (TTCC)n Simple_repeat Simple_repeat 2 26 0 7 1221 510 229 0 9 chr12 83384226 83384332 -37873198 - PB1D9 SINE Alu -13 107 3 7 1221 395 146 152 33 chr12 83386245 83386337 -37871193 - PB1D10 SINE Alu -13 104 2 7 1221 264 30 0 0 chr12 83386580 83386613 -37870917 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1221 227 315 33 22 chr12 83386761 83386852 -37870678 + PB1D10 SINE Alu 13 104 -13 7 1221 180 0 0 0 chr12 83386873 83386893 -37870637 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1221 934 217 5 5 chr12 83388271 83388461 -37869069 + B3 SINE B2 2 191 -25 7 1221 189 107 0 0 chr12 83388509 83388537 -37868993 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1221 1255 41 0 0 chr12 83388537 83388682 -37868848 - B1_Mm SINE Alu 0 147 3 7 1221 387 301 88 28 chr12 83388706 83388887 -37868643 - B3A SINE B2 -2 196 5 7 1221 1017 153 0 0 chr12 83391476 83391652 -37865878 + CT-rich Low_complexity Low_complexity 5 180 0 7 1221 1130 82 0 0 chr12 83391652 83391798 -37865732 - B1_Mus1 SINE Alu 0 148 3 7 1221 1574 43 21 0 chr12 83391814 83392002 -37865528 - B2_Mm1a SINE B2 0 193 2 7 1221 1221 48 0 0 chr12 83392855 83393001 -37864529 - B1_Mm SINE Alu 0 147 2 7 1221 276 231 59 49 chr12 83393001 83393124 -37864406 - L1M4 LINE L1 -2087 4059 3936 7 1221 463 273 107 11 chr12 83393166 83393344 -37864186 - B4A SINE B4 -4 288 94 7 1221 647 145 142 24 chr12 83393220 83393347 -37864183 - B1_Mus1 SINE Alu 0 148 7 7 1221 465 273 26 69 chr12 83393348 83393537 -37863993 - B4A SINE B4 -62 230 50 7 1221 301 231 251 75 chr12 83393630 83393869 -37863661 - L1M4 LINE L1 -2467 3679 3399 7 1221 1142 69 0 0 chr12 83394276 83394420 -37863110 - B1_Mus1 SINE Alu 0 148 5 7 1221 324 276 61 55 chr12 83394435 83394600 -37862930 - L1MC LINE L1 -2869 3277 3112 7 1221 898 147 39 94 chr12 83394622 83394825 -37862705 + B2_Mm2 SINE B2 1 192 -3 7 1221 308 286 123 0 chr12 83395768 83395921 -37861609 - L1MD2 LINE L1 -495 5864 5684 7 1221 210 37 0 0 chr12 83396315 83396342 -37861188 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1221 634 178 12 146 chr12 83396980 83397151 -37860379 + B1_Mur2 SINE Alu 1 148 -1 7 1221 2866 129 248 67 chr12 83398039 83398663 -37858867 - RMER19A LTR ERVK 0 737 1 7 1221 285 75 0 0 chr12 83398783 83398823 -37858707 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1221 704 244 25 6 chr12 83398823 83398984 -37858546 - B3A SINE B2 -34 164 1 7 1221 200 264 0 0 chr12 83399004 83399076 -37858454 + CT-rich Low_complexity Low_complexity 1 72 0 7 1221 235 328 0 0 chr12 83399136 83399200 -37858330 + tRNA-Ala-GCY_ tRNA tRNA 4 67 -8 7 1221 254 290 48 61 chr12 83399613 83399760 -37857770 + L1M5 LINE L1 5325 5469 -975 7 1221 397 240 106 0 chr12 83401805 83401909 -37855621 - ID_B1 SINE B4 -2 222 108 7 1221 251 281 22 174 chr12 83401909 83401943 -37855587 - PB1D7 SINE Alu -2 118 2 7 1221 576 265 43 29 chr12 83401967 83402177 -37855353 - B3 SINE B2 -3 213 1 7 1221 22 0 0 0 chr12 83402181 83402203 -37855327 + AT_rich Low_complexity Low_complexity 1 22 0 7 1221 234 0 0 0 chr12 83402460 83402486 -37855044 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 7 1221 1131 65 0 0 chr12 83402486 83402624 -37854906 - B1_Mus1 SINE Alu -10 138 1 7 1221 459 217 146 58 chr12 83403045 83403168 -37854362 + B1_Mur2 SINE Alu 1 137 -12 7 1221 261 0 0 0 chr12 83403168 83403197 -37854333 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1221 459 217 146 58 chr12 83403197 83403210 -37854320 + B1_Mur2 SINE Alu 138 149 0 7 1221 603 300 11 40 chr12 83403473 83403650 -37853880 - B3 SINE B2 -44 172 1 7 1221 478 323 151 11 chr12 83404177 83404549 -37852981 + MER21B LTR ERV1 229 652 -211 7 1221 255 200 189 0 chr12 83404967 83405062 -37852468 - MLT2C2 LTR ERVL -223 174 62 7 1221 267 238 23 23 chr12 83405123 83405209 -37852321 - MLT2C2 LTR ERVL -378 86 1 7 1221 3543 155 42 78 chr12 83406434 83407258 -37850272 - RLTR25B LTR ERVK -232 796 2 7 1221 1138 186 17 68 chr12 83407554 83407791 -37849739 + URR1B DNA MER1_type 1 225 0 7 1221 238 148 66 0 chr12 83409193 83409254 -37848276 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 7 1221 290 333 119 27 chr12 83409259 83409478 -37848052 + L1MC4a LINE L1 6644 6882 -1000 7 1221 1388 73 0 6 chr12 83409482 83409661 -37847869 + B2_Mm2 SINE B2 1 178 -17 7 1221 242 274 46 64 chr12 83410090 83410199 -37847331 - MER34 LTR ERV1 -63 479 373 7 1221 1642 21 5 5 chr12 83410203 83410395 -37847135 - B2_Mm1a SINE B2 0 193 2 7 1221 455 299 11 163 chr12 83411003 83411279 -37846251 - MTE2a LTR MaLR -145 234 1 7 1221 288 215 246 22 chr12 83411758 83411896 -37845634 + B3 SINE B2 3 171 -27 7 1221 185 83 0 27 chr12 83411932 83411969 -37845561 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 7 1221 515 243 43 7 chr12 83411977 83412118 -37845412 + B1_Mm SINE Alu 2 147 0 7 1221 255 255 0 0 chr12 83412890 83412937 -37844593 + (CCCTAG)n Simple_repeat Simple_repeat 5 51 0 7 1221 428 281 44 0 chr12 83413847 83413982 -37843548 - ID_B1 SINE B4 -3 221 81 7 1221 252 86 0 0 chr12 83414000 83414035 -37843495 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1221 574 213 270 29 chr12 83414598 83414772 -37842758 - B3 SINE B2 0 216 1 7 1221 243 0 0 0 chr12 83415186 83415213 -37842317 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1221 589 244 15 15 chr12 83415323 83415460 -37842070 - B1_Mur2 SINE Alu -10 139 3 7 1221 380 267 289 11 chr12 83415462 83415635 -37841895 - B4A SINE B4 -63 229 9 7 1221 315 314 0 0 chr12 83415711 83415797 -37841733 + PB1D10 SINE Alu 20 105 -12 7 1221 482 242 97 15 chr12 83415915 83416049 -37841481 + B1_Mur1 SINE Alu 2 146 -3 7 1221 25 99 0 0 chr12 83416866 83416947 -37840583 + AT_rich Low_complexity Low_complexity 1 81 0 7 1221 296 313 68 38 chr12 83418070 83418203 -37839327 - B1F SINE Alu -6 143 7 7 1221 3315 111 0 73 chr12 83421088 83421652 -37835878 - L1_Mur1 LINE L1 -174 5712 5190 7 1221 335 281 52 7 chr12 83421675 83421811 -37835719 - B4 SINE B4 -40 252 111 7 1221 856 148 0 51 chr12 83424648 83424805 -37832725 - B1_Mur4 SINE Alu -1 149 1 7 1221 855 264 65 0 chr12 83425950 83426196 -37831334 - B4A SINE B4 -26 266 5 7 1221 1982 182 58 0 chr12 83426388 83426751 -37830779 - ORR1C2 LTR MaLR 0 384 1 7 1221 243 250 87 79 chr12 83426751 83426877 -37830653 + B2_Mm2 SINE B2 2 128 -67 7 1221 1229 28 0 7 chr12 83428398 83428544 -37828986 + B1_Mm SINE Alu 3 147 0 7 1221 291 145 0 0 chr12 83428546 83428615 -37828915 + (CAAAAA)n Simple_repeat Simple_repeat 3 71 0 7 1221 21 0 0 0 chr12 83428679 83428700 -37828830 + AT_rich Low_complexity Low_complexity 1 21 0 7 1221 544 290 144 41 chr12 83428831 83429025 -37828505 + ID_B1 SINE B4 10 223 -1 7 1221 215 0 0 0 chr12 83430131 83430159 -37827371 - B1_Mus2 SINE Alu -119 28 1 7 1221 495 0 0 0 chr12 83431268 83431323 -37826207 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1221 558 0 0 0 chr12 83431485 83431547 -37825983 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 7 1221 731 272 6 0 chr12 83434023 83434196 -37823334 + ID_B1 SINE B4 41 214 -10 7 1221 396 0 0 0 chr12 83437022 83437066 -37820464 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1221 213 121 0 0 chr12 83437082 83437115 -37820415 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 7 1221 518 296 7 7 chr12 83437163 83437309 -37820221 + ID_B1 SINE B4 79 224 0 7 1221 214 82 20 39 chr12 83438141 83438192 -37819338 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 7 1221 909 118 0 14 chr12 83438193 83438339 -37819191 - B1_Mus1 SINE Alu 0 148 5 7 1221 333 247 10 51 chr12 83438368 83438466 -37819064 + B4A SINE B4 5 98 -194 7 1221 548 238 33 0 chr12 83439220 83439342 -37818188 + B3 SINE B2 1 126 -90 7 1221 246 62 0 0 chr12 83439359 83439391 -37818139 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1221 348 83 0 0 chr12 83439391 83439438 -37818092 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 1221 406 250 9 18 chr12 83439629 83439739 -37817791 + PB1D10 SINE Alu 1 109 -8 7 1221 24 0 0 0 chr12 83443502 83443526 -37814004 + AT_rich Low_complexity Low_complexity 1 24 0 7 1221 333 0 0 0 chr12 83446314 83446351 -37811179 + (TAA)n Simple_repeat Simple_repeat 3 39 0 7 1221 364 276 37 19 chr12 83447681 83447788 -37809742 - PB1 SINE Alu -18 109 1 7 1221 571 206 96 0 chr12 83449346 83449482 -37808048 + B1_Mur2 SINE Alu 1 149 0 7 1221 445 352 60 0 chr12 83450041 83450240 -37807290 - B4A SINE B4 -6 286 76 7 1221 204 68 114 0 chr12 83450724 83450768 -37806762 + CT-rich Low_complexity Low_complexity 2 50 0 7 1221 28 0 0 0 chr12 83451101 83451129 -37806401 + GC_rich Low_complexity Low_complexity 1 28 0 7 1221 459 0 0 0 chr12 83451129 83451180 -37806350 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1221 183 139 0 0 chr12 83451652 83451688 -37805842 + (ATTG)n Simple_repeat Simple_repeat 4 39 0 8 1221 271 170 19 19 chr12 83451689 83451743 -37805787 - ID4_ SINE ID -3 80 27 8 1221 182 171 0 24 chr12 83451830 83451872 -37805658 + CT-rich Low_complexity Low_complexity 2 42 0 8 1221 23 0 0 0 chr12 83453053 83453076 -37804454 + AT_rich Low_complexity Low_complexity 1 23 0 8 1221 505 319 35 22 chr12 83453536 83453767 -37803763 + B4A SINE B4 55 288 -4 8 1221 203 277 0 15 chr12 83453782 83453848 -37803682 + (CATA)n Simple_repeat Simple_repeat 4 68 0 8 1221 540 272 9 109 chr12 83456696 83457026 -37800504 - Tigger15a DNA TcMar -325 390 94 8 1221 220 323 46 0 chr12 83457528 83457593 -37799937 - ID4_ SINE ID -8 75 8 8 1221 543 331 106 42 chr12 83458452 83458717 -37798813 + B4 SINE B4 3 284 -8 8 1221 392 284 68 17 chr12 83459124 83459242 -37798288 - RSINE1 SINE B4 -31 134 11 8 1221 300 53 0 0 chr12 83459767 83459805 -37797725 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1221 3530 28 2 0 chr12 83460234 83460629 -37796901 - MTA_Mm LTR MaLR 0 396 1 8 1221 9494 32 1 0 chr12 83460629 83461726 -37795804 - MTA_Mm-int LTR MaLR 0 1098 1 8 1221 3399 21 26 0 chr12 83461726 83462112 -37795418 - MTA_Mm LTR MaLR 0 396 1 8 1221 187 385 21 10 chr12 83462135 83462232 -37795298 + L2 LINE L2 2540 2637 -782 8 1221 223 234 104 0 chr12 83462658 83462735 -37794795 + L2a LINE L2 3259 3343 -83 8 1221 433 314 47 24 chr12 83464432 83464644 -37792886 - MIRb SINE MIR -26 242 26 8 1221 605 253 62 29 chr12 83467145 83467389 -37790141 - ALINE LINE RTE -224 393 142 8 1221 250 307 56 35 chr12 83468585 83468727 -37788803 + L1MDa LINE L1 16 160 -6473 8 1221 180 0 0 0 chr12 83468800 83468820 -37788710 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1221 309 151 0 0 chr12 83469829 83469882 -37787648 + (CATA)n Simple_repeat Simple_repeat 3 55 0 8 1221 642 200 51 22 chr12 83469888 83470026 -37787504 + B1_Mur1 SINE Alu 6 147 -2 8 1221 589 271 128 15 chr12 83471605 83471871 -37785659 - MER46C DNA MER2_type -38 300 5 8 1221 596 215 23 8 chr12 83471911 83472042 -37785488 + B1_Mur3 SINE Alu 1 133 -16 8 1221 38 0 0 0 chr12 83472043 83472081 -37785449 + AT_rich Low_complexity Low_complexity 1 38 0 8 1221 268 290 26 0 chr12 83472281 83472366 -37785164 + AluG_3 SINE Alu 138 213 -98 8 1221 250 229 0 16 chr12 83473932 83473994 -37783536 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1221 303 96 0 0 chr12 83474078 83474130 -37783400 + (T)n Simple_repeat Simple_repeat 1 52 0 8 1221 643 238 42 7 chr12 83474130 83474274 -37783256 - B1_Mur1 SINE Alu 0 149 1 8 1221 227 267 103 39 chr12 83474277 83474355 -37783175 - RSINE1 SINE B4 -74 91 9 8 1221 667 301 76 5 chr12 83474425 83474649 -37782881 - B4 SINE B4 -6 286 47 8 1221 513 204 10 0 chr12 83475957 83476055 -37781475 + ID_B1 SINE B4 117 215 -9 8 1221 219 232 0 0 chr12 83477235 83477291 -37780239 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 8 1221 262 111 67 0 chr12 83478086 83478131 -37779399 + B3A SINE B2 1 48 -150 8 1221 16882 62 13 12 chr12 83478131 83481057 -37776473 + L1Md_F2 LINE L1 3744 6638 0 8 1221 698 279 25 20 chr12 83481117 83481318 -37776212 + B3 SINE B2 26 206 -10 8 1221 330 26 0 0 chr12 83481450 83481489 -37776041 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1221 281 281 0 0 chr12 83481518 83481582 -37775948 - RSINE1 SINE B4 -18 147 84 8 1221 371 268 13 115 chr12 83481635 83481791 -37775739 - B4 SINE B4 -152 140 1 8 1221 344 207 45 11 chr12 83482087 83482175 -37775355 - ORR1D1 LTR MaLR -279 95 5 8 1221 258 234 31 0 chr12 83482215 83482279 -37775251 - ID4 SINE ID -17 66 1 8 1221 470 221 8 42 chr12 83482662 83482780 -37774750 - PB1D10 SINE Alu 0 117 4 8 1221 842 122 0 48 chr12 83482908 83483054 -37774476 + B1_Mus1 SINE Alu 10 148 0 8 1221 342 295 184 15 chr12 83484615 83484811 -37772719 + Charlie4a DNA MER1_type 42 270 -238 8 1221 415 296 27 34 chr12 83484893 83485040 -37772490 - B1F SINE Alu -2 147 2 8 1221 183 222 0 0 chr12 83485102 83485147 -37772383 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 1221 273 279 16 0 chr12 83485195 83485256 -37772274 - B4A SINE B4 -8 284 223 8 1221 894 208 70 10 chr12 83487460 83487659 -37769871 + B3 SINE B2 1 211 -5 8 1221 1293 81 23 0 chr12 83489276 83489448 -37768082 - B2_Mm2 SINE B2 -19 176 1 8 1221 494 135 27 9 chr12 83489567 83489679 -37767851 - Lx9 LINE L1 -8 7636 7523 8 1221 185 140 0 23 chr12 83489854 83489898 -37767632 + (TGG)n Simple_repeat Simple_repeat 3 45 0 8 1221 397 216 13 58 chr12 83489898 83490014 -37767516 - B1_Mur4 SINE Alu -3 146 26 8 1221 425 204 113 17 chr12 83490502 83490617 -37766913 - B3 SINE B2 0 216 91 8 1221 27 29 0 0 chr12 83491723 83491757 -37765773 + AT_rich Low_complexity Low_complexity 1 34 0 8 1221 405 0 0 0 chr12 83492295 83492340 -37765190 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1221 1033 50 7 7 chr12 83492505 83492646 -37764884 + (TCTCC)n Simple_repeat Simple_repeat 5 145 0 8 1221 672 184 16 8 chr12 83492650 83492776 -37764754 - B1_Mus1 SINE Alu -21 127 1 8 1221 465 240 10 158 chr12 83492776 83492859 -37764671 - ID SINE ID -144 80 28 8 1222 416 265 36 14 chr12 83492920 83493058 -37764472 - B1F SINE Alu -8 141 1 8 1222 334 285 130 8 chr12 83493637 83493768 -37763762 - RSINE1 SINE B4 -17 148 2 8 1222 463 223 126 0 chr12 83493801 83493904 -37763626 - ID_B1 SINE B4 -23 201 86 8 1222 1139 63 14 0 chr12 83493953 83494096 -37763434 - B1_Mus1 SINE Alu -3 145 1 8 1222 290 255 85 0 chr12 83495927 83496021 -37761509 - B1F1 SINE Alu -11 138 37 8 1222 186 71 0 0 chr12 83499159 83499187 -37758343 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1222 749 191 0 7 chr12 83499192 83499340 -37758190 + B1_Mus2 SINE Alu 1 147 0 8 1222 927 153 0 45 chr12 83499432 83499589 -37757941 + B1_Mur4 SINE Alu 1 150 0 8 1222 21 57 0 0 chr12 83499610 83499645 -37757885 + AT_rich Low_complexity Low_complexity 1 35 0 8 1222 211 240 20 0 chr12 83500535 83500585 -37756945 - MIR SINE MIR -57 205 155 1 1222 278 87 0 21 chr12 83500754 83500801 -37756729 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 1222 23 0 0 0 chr12 83501665 83501688 -37755842 + AT_rich Low_complexity Low_complexity 1 23 0 3 1222 307 246 181 14 chr12 83502907 83503051 -37754479 + Charlie5 DNA MER1_type 2430 2597 -27 4 1222 956 267 188 14 chr12 83505841 83506069 -37751461 - MTD LTR MaLR 0 419 163 5 1222 498 162 265 0 chr12 83506069 83506186 -37751344 - B1_Mus1 SINE Alu 0 148 1 6 1222 956 267 188 14 chr12 83506186 83506314 -37751216 - MTD LTR MaLR -257 162 1 5 1222 393 217 0 12 chr12 83508199 83508283 -37749247 - RSINE1 SINE B4 -1 164 82 7 1222 591 226 108 44 chr12 83508400 83508604 -37748926 - B4A SINE B4 -74 218 2 8 1222 495 0 0 0 chr12 83508852 83508907 -37748623 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1222 185 243 115 51 chr12 83510443 83510521 -37747009 - MIR3 SINE MIR -122 86 4 1 1222 413 340 21 28 chr12 83510613 83510758 -37746772 + MER45A DNA Tip100 35 178 0 1 1222 854 230 146 4 chr12 83511636 83511876 -37745654 - Lx8 LINE L1 -1 7472 7199 1 1222 903 224 115 115 chr12 83511891 83512229 -37745301 - ORR1D1 LTR MaLR 0 374 37 1 1222 2064 288 70 11 chr12 83512233 83512859 -37744671 - Lx8 LINE L1 -292 7181 6519 1 1222 243 303 0 62 chr12 83512865 83512946 -37744584 + B4 SINE B4 194 269 -23 1 1222 540 81 0 0 chr12 83512948 83513022 -37744508 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1222 1145 203 14 0 chr12 83514245 83514452 -37743078 + B3 SINE B2 1 210 -6 1 1222 606 288 85 10 chr12 83514983 83515183 -37742347 + B3 SINE B2 2 216 0 1 1222 3705 162 68 6 chr12 83515585 83516236 -37741294 - RLTR17 LTR ERVK 0 692 2 1 1222 864 139 44 0 chr12 83518407 83518544 -37738986 - B1_Mur4 SINE Alu -6 144 2 1 1222 215 0 67 0 chr12 83518546 83518576 -37738954 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2 1222 400 304 101 29 chr12 83519031 83519079 -37738451 - B3 SINE B2 -11 205 149 2 1222 297 0 0 0 chr12 83519079 83519112 -37738418 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1222 400 304 101 29 chr12 83519112 83519202 -37738328 - B3 SINE B2 -68 148 57 2 1222 180 0 0 0 chr12 83519573 83519593 -37737937 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1222 454 239 44 0 chr12 83519942 83520055 -37737475 - PB1D9 SINE Alu -1 119 2 2 1222 1519 47 11 0 chr12 83520872 83521063 -37736467 + B2_Mm1a SINE B2 1 193 0 2 1222 265 209 92 11 chr12 83523584 83523671 -37733859 + MER33 DNA MER1_type 195 288 -36 2 1222 272 256 48 24 chr12 83524274 83524358 -37733172 - L1MB7 LINE L1 -11 6173 6088 2 1222 425 298 93 58 chr12 83524361 83524500 -37733030 + RSINE1 SINE B4 10 153 -12 2 1222 886 283 89 31 chr12 83524551 83524999 -37732531 - L1MB7 LINE L1 -85 6099 5626 2 1222 562 262 92 74 chr12 83525200 83525269 -37732261 - L1MB7 LINE L1 -954 5192 5128 2 1222 252 0 0 0 chr12 83525269 83525297 -37732233 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1222 562 240 67 63 chr12 83525297 83525517 -37732013 - L1MB7 LINE L1 -1019 5127 4895 2 1222 1112 220 189 0 chr12 83527414 83527773 -37729757 - Lx9 LINE L1 -36 7608 7182 3 1222 731 157 97 0 chr12 83529230 83529364 -37728166 + B1_Mur4 SINE Alu 2 148 -2 3 1222 1402 88 0 20 chr12 83531089 83531287 -37726243 - B2_Mm2 SINE B2 -1 194 1 3 1222 249 256 124 88 chr12 83531666 83531803 -37725727 + MER5A DNA MER1_type 2 143 -46 3 1222 447 181 23 3 chr12 83532334 83532449 -37725081 - B3A SINE B2 -73 122 2 3 1222 234 248 119 0 chr12 83532914 83533015 -37724515 - L1MC3 LINE L1 -28 7757 7645 3 1222 492 81 0 0 chr12 83535624 83535698 -37721832 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1222 221 261 116 0 chr12 83537491 83537560 -37719970 + ID_B1 SINE B4 68 144 -80 3 1222 252 227 38 16 chr12 83537508 83537592 -37719938 + PB1D9 SINE Alu 7 92 -55 3 1222 352 245 105 39 chr12 83537610 83537763 -37719767 + RSINE1 SINE B4 3 165 0 3 1222 819 222 74 0 chr12 83537882 83538071 -37719459 - B3 SINE B2 -11 205 3 4 1222 336 214 194 48 chr12 83538343 83538446 -37719084 + PB1D9 SINE Alu 3 120 0 4 1222 776 194 178 0 chr12 83539882 83540073 -37717457 - URR1B DNA MER1_type 0 225 1 4 1222 669 261 60 93 chr12 83542590 83542924 -37714606 - RLTR15 LTR ERVK -36 323 1 4 1222 4000 191 44 54 chr12 83542924 83543197 -37714333 - MYSERV6-int LTR ERVK 0 8959 8719 4 1222 1116 68 7 27 chr12 83543197 83543347 -37714183 + B1_Mus2 SINE Alu 1 147 0 4 1222 4000 191 44 54 chr12 83543347 83544049 -37713481 - MYSERV6-int LTR ERVK -241 8718 7994 4 1222 957 87 0 0 chr12 83544065 83544192 -37713338 - B1_Mus1 SINE Alu -2 146 20 4 1222 402 161 0 121 chr12 83544108 83544207 -37713323 - MT2B LTR ERVL -344 257 171 4 1222 591 158 55 0 chr12 83544207 83544368 -37713162 - MYSERV6-int LTR ERVK -991 7968 7856 4 1222 483 275 69 64 chr12 83544369 83544571 -37712959 - RMER4A LTR ERVK -13 453 251 4 1222 2588 261 70 38 chr12 83544579 83545840 -37711690 - MYSERV6-int LTR ERVK -1428 5122 3791 4 1222 375 172 0 86 chr12 83545908 83546052 -37711478 - IAPEz-int LTR ERVK -5548 933 835 4 1222 1125 79 82 33 chr12 83546344 83546528 -37711002 - B2_Mm2 SINE B2 -1 194 2 4 1222 376 273 163 43 chr12 83546784 83546968 -37710562 - RLTR15 LTR ERVK -153 206 1 5 1222 1900 91 57 120 chr12 83547398 83547748 -37709782 - ORR1A4 LTR MaLR 0 329 2 5 1222 550 209 18 0 chr12 83548620 83548730 -37708800 + PB1D10 SINE Alu 1 112 -5 5 1222 202 149 0 60 chr12 83551198 83551248 -37706282 + A-rich Low_complexity Low_complexity 3 49 0 5 1222 490 82 51 0 chr12 83552286 83552384 -37705146 + (TC)n Simple_repeat Simple_repeat 1 103 0 5 1222 239 227 147 29 chr12 83553434 83553502 -37704028 + ID2 SINE ID 1 76 -7 5 1222 269 202 74 5 chr12 83553506 83553520 -37704010 + PB1D10 SINE Alu 24 66 -61 5 1222 311 122 0 0 chr12 83553520 83553569 -37703961 + ID_B1 SINE B4 116 164 -60 5 1222 269 202 74 5 chr12 83553569 83553580 -37703950 + PB1D10 SINE Alu 67 108 -19 5 1222 240 287 149 0 chr12 83553786 83553873 -37703657 + PB1D10 SINE Alu 10 109 -8 5 1222 1134 110 65 11 chr12 83554029 83554213 -37703317 + B2_Mm2 SINE B2 2 195 0 5 1222 1334 46 109 6 chr12 83554216 83554372 -37703158 + B2_Mm1t SINE B2 1 175 -18 6 1222 351 0 0 0 chr12 83554372 83554411 -37703119 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 1222 1334 46 109 6 chr12 83554411 83554429 -37703101 + B2_Mm1t SINE B2 176 193 0 6 1222 264 59 0 0 chr12 83554448 83554482 -37703048 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 6 1222 180 377 64 14 chr12 83554775 83554915 -37702615 - MER5A DNA MER1_type 0 189 43 6 1222 213 211 89 38 chr12 83555426 83555505 -37702025 - L3b LINE CR1 -228 254 172 6 1222 1108 68 0 45 chr12 83556207 83556361 -37701169 + B1_Mm SINE Alu 1 147 0 6 1222 229 237 180 33 chr12 83556624 83556746 -37700784 - MamRep434 DNA TcMar -215 211 72 6 1222 200 310 137 52 chr12 83557124 83557277 -37700253 - L3 LINE CR1 -2 4487 4322 6 1222 495 0 0 0 chr12 83557289 83557344 -37700186 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1222 494 265 193 44 chr12 83557387 83557461 -37700069 - B4 SINE B4 -6 286 210 6 1222 239 0 32 0 chr12 83557461 83557492 -37700038 + (ATTG)n Simple_repeat Simple_repeat 3 34 0 7 1222 494 265 193 44 chr12 83557492 83557666 -37699864 - B4 SINE B4 -83 209 2 6 1222 278 335 98 9 chr12 83557679 83557893 -37699637 - L3 LINE CR1 -196 4293 4061 6 1222 391 234 93 39 chr12 83557934 83558063 -37699467 - MIR SINE MIR -57 205 70 7 1222 203 119 23 23 chr12 83559402 83559445 -37698085 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1222 593 294 65 20 chr12 83559445 83559646 -37697884 - MLT1H1 LTR MaLR -52 503 294 7 1222 236 77 26 0 chr12 83559646 83559685 -37697845 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 7 1222 1956 174 80 40 chr12 83560604 83561006 -37696524 + MTC LTR MaLR 4 421 0 7 1222 1815 209 77 16 chr12 83561009 83561388 -37696142 - MTC LTR MaLR -12 409 8 7 1222 879 116 117 35 chr12 83561394 83561591 -37695939 - MTC-int LTR MaLR -2 1256 1044 7 1222 2298 106 0 6 chr12 83561594 83561927 -37695603 - MTC-int LTR MaLR -605 1358 1028 7 1222 408 179 0 0 chr12 83561927 83562005 -37695525 + (CATA)n Simple_repeat Simple_repeat 3 80 0 7 1222 2940 8 5 135 chr12 83562005 83562427 -37695103 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1222 29519 19 1 1 chr12 83562427 83565701 -37691829 - IAPEz-int LTR ERVK 0 6481 3210 7 1222 6833 81 144 38 chr12 83565700 83566877 -37690653 - IAPEz-int LTR ERVK -5168 1313 67 7 1222 1049 86 159 0 chr12 83566848 83567011 -37690519 - IAPEz-int LTR ERVK -6285 196 8 7 1222 2940 8 5 135 chr12 83567011 83567433 -37690097 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1222 291 175 0 0 chr12 83567433 83567490 -37690040 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 1222 1251 61 110 0 chr12 83567490 83567654 -37689876 - B2_Mm2 SINE B2 -12 183 2 8 1222 2067 147 37 13 chr12 83567656 83568035 -37689495 - MTC-int LTR MaLR -710 388 1 7 1222 872 157 149 17 chr12 83568037 83568212 -37689318 - MTC LTR MaLR -2 419 222 7 1222 282 29 0 0 chr12 83568218 83568253 -37689277 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1222 1632 186 95 11 chr12 83568260 83568609 -37688921 + MTD LTR MaLR 42 419 0 8 1222 369 0 0 0 chr12 83568846 83568887 -37688643 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1222 25 0 0 0 chr12 83571337 83571362 -37686168 + AT_rich Low_complexity Low_complexity 1 25 0 8 1222 216 67 0 0 chr12 83571439 83571469 -37686061 + (TGGGGG)n Simple_repeat Simple_repeat 3 32 0 8 1222 234 271 47 85 chr12 83571739 83571774 -37685756 + ID SINE ID 49 78 -146 8 1222 369 156 57 121 chr12 83571774 83571898 -37685632 + PB1D10 SINE Alu 1 116 -1 8 1222 2492 200 159 19 chr12 83571972 83572618 -37684912 + RMER19A LTR ERVK 1 737 0 8 1222 817 342 132 40 chr12 83572989 83573522 -37684008 + Zaphod DNA Tip100 42 623 -3408 8 1222 1015 201 31 36 chr12 83573522 83573744 -37683786 - URR1B DNA MER1_type -4 221 1 9 1222 817 342 132 40 chr12 83573744 83573832 -37683698 + Zaphod DNA Tip100 624 720 -3311 8 1222 1349 166 9 5 chr12 83574618 83574842 -37682688 - URR1B DNA MER1_type 0 225 1 9 1222 1999 192 179 14 chr12 83575940 83576442 -37681088 - RMER4B LTR ERVK 0 585 1 9 1222 231 270 235 34 chr12 83576494 83576613 -37680917 - Charlie8 DNA MER1_type -2171 257 115 9 1222 1486 60 33 0 chr12 83576625 83576809 -37680721 + B2_Mm2 SINE B2 1 190 -5 9 1222 790 201 41 32 chr12 83576816 83577037 -37680493 + ID_B1 SINE B4 2 224 0 9 1222 180 0 0 0 chr12 83577054 83577074 -37680456 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1222 552 261 169 6 chr12 83577428 83577605 -37679925 + MLT1A0 LTR MaLR 1 206 -159 9 1222 378 0 0 0 chr12 83578078 83578120 -37679410 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1222 713 175 4 0 chr12 83578120 83578396 -37679134 + GA-rich Low_complexity Low_complexity 1 277 0 9 1222 180 111 0 0 chr12 83578406 83578433 -37679097 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 1 1222 250 181 53 57 chr12 83578440 83578703 -37678827 - RMER17D LTR ERVK -417 472 211 1 1222 317 336 41 35 chr12 83578654 83578799 -37678731 - RSINE1 SINE B4 -18 147 2 1 1222 761 276 28 43 chr12 83579644 83579898 -37677632 + B4A SINE B4 2 251 -41 1 1222 234 0 0 0 chr12 83580427 83580453 -37677077 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1222 198 0 0 0 chr12 83581186 83581208 -37676322 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1222 950 34 17 0 chr12 83581433 83581551 -37675979 + B1_Mus1 SINE Alu 29 148 0 1 1222 189 0 0 0 chr12 83581551 83581572 -37675958 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1222 562 179 77 0 chr12 83581662 83581779 -37675751 + RSINE1 SINE B4 9 134 -31 1 1222 457 97 0 0 chr12 83582116 83582178 -37675352 + URR1B DNA MER1_type 164 225 0 1 1222 3147 14 0 6 chr12 83582437 83582785 -37674745 - ORR1A0 LTR MaLR 0 346 1 1 1222 14149 46 15 7 chr12 83582785 83584562 -37672968 - ORR1A0-int LTR MaLR 0 1792 1 1 1222 2011 26 296 0 chr12 83584562 83584623 -37672907 - ORR1A0 LTR MaLR 0 346 286 1 1222 252 0 0 0 chr12 83584623 83584651 -37672879 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1222 2011 26 296 0 chr12 83584651 83584856 -37672674 - ORR1A0 LTR MaLR -61 285 2 1 1222 345 327 27 0 chr12 83584984 83585094 -37672436 - PB1D7 SINE Alu -7 113 1 1 1222 1851 182 40 43 chr12 83585509 83585882 -37671648 + ORR1D1 LTR MaLR 3 374 0 1 1222 723 244 129 53 chr12 83587333 83587597 -37669933 + B4A SINE B4 5 288 -4 1 1222 180 97 0 0 chr12 83587626 83587657 -37669873 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1222 828 143 8 0 chr12 83587772 83587905 -37669625 - URR1A DNA MER1_type -12 214 81 1 1222 562 224 38 108 chr12 83588302 83588487 -37669043 + B4 SINE B4 2 173 -119 1 1222 252 0 0 0 chr12 83588593 83588621 -37668909 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1222 369 0 0 0 chr12 83588668 83588709 -37668821 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1222 797 221 96 32 chr12 83588731 83588951 -37668579 - B4A SINE B4 -55 237 4 1 1222 765 170 52 0 chr12 83588971 83589106 -37668424 + B1_Mur1 SINE Alu 1 142 -7 1 1222 779 181 7 0 chr12 83589983 83590121 -37667409 - B1_Mur3 SINE Alu 0 149 11 1 1222 185 0 40 0 chr12 83590161 83590186 -37667344 + (GGGTG)n Simple_repeat Simple_repeat 1 26 0 1 1222 235 274 0 0 chr12 83590465 83590516 -37667014 - Tigger9a DNA Tigger -484 248 198 1 1222 237 294 120 56 chr12 83590942 83591050 -37666480 - MIR3 SINE MIR -8 200 86 1 1222 279 0 0 0 chr12 83591309 83591340 -37666190 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1 1222 1147 126 11 37 chr12 83591425 83591582 -37665948 + B2_Mm2 SINE B2 3 161 -34 1 1222 288 0 0 0 chr12 83591582 83591614 -37665916 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 1 1222 1147 126 11 37 chr12 83591614 83591645 -37665885 + B2_Mm2 SINE B2 162 186 -9 1 1222 33 0 0 0 chr12 83592488 83592521 -37665009 + AT_rich Low_complexity Low_complexity 1 33 0 1 1222 21 0 0 0 chr12 83592896 83592917 -37664613 + AT_rich Low_complexity Low_complexity 1 21 0 1 1222 559 65 65 0 chr12 83593536 83593630 -37663900 - B1_Mur4 SINE Alu -3 147 2 1 1222 222 235 0 0 chr12 83594931 83594982 -37662548 + A-rich Low_complexity Low_complexity 1 51 0 1 1222 35 24 0 0 chr12 83595337 83595379 -37662151 + AT_rich Low_complexity Low_complexity 1 42 0 1 1222 189 221 0 0 chr12 83596628 83596696 -37660834 + CT-rich Low_complexity Low_complexity 1 68 0 1 1222 189 159 0 0 chr12 83597270 83597314 -37660216 + (CTG)n Simple_repeat Simple_repeat 1 44 0 1 1222 344 265 169 19 chr12 83597530 83597684 -37659846 + L1MD LINE L1 3102 3278 -2868 1 1222 219 224 0 20 chr12 83597862 83597912 -37659618 + (CCG)n Simple_repeat Simple_repeat 2 50 0 1 1222 396 0 0 0 chr12 83597936 83597980 -37659550 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 1222 1185 44 0 0 chr12 83597980 83598117 -37659413 - B1_Mm SINE Alu -10 137 1 1 1222 255 31 0 0 chr12 83598486 83598518 -37659012 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1 1222 1088 36 73 0 chr12 83598521 83598658 -37658872 - B1_Mus1 SINE Alu 0 148 2 1 1222 231 114 0 0 chr12 83598680 83598724 -37658806 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 1 1222 605 248 0 0 chr12 83598743 83598860 -37658670 + PB1D10 SINE Alu 1 117 0 1 1222 246 32 0 0 chr12 83598872 83598903 -37658627 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1222 532 282 30 8 chr12 83599099 83599231 -37658299 + RSINE1 SINE B4 2 136 -29 1 1222 1212 140 0 130 chr12 83599600 83599846 -37657684 + URR1B DNA MER1_type 2 215 -10 1 1222 1275 34 0 0 chr12 83600205 83600352 -37657178 + B1_Mus1 SINE Alu 2 148 0 1 1222 369 0 0 0 chr12 83600472 83600513 -37657017 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 1222 428 299 34 6 chr12 83600518 83600655 -37656875 - B1F SINE Alu -10 138 3 1 1222 1942 77 4 8 chr12 83601489 83601750 -37655780 - MT2C_Mm LTR ERVL 0 475 216 1 1222 1191 63 0 0 chr12 83601750 83601892 -37655638 + B1_Mus2 SINE Alu 1 142 -5 1 1222 11931 55 9 1 chr12 83601892 83603443 -37654087 + ORR1A1-int LTR MaLR 230 1792 0 1 1222 2960 49 0 0 chr12 83603443 83603789 -37653741 + ORR1A1 LTR MaLR 1 346 0 1 1222 6408 169 16 10 chr12 83603789 83604947 -37652583 + Lx4B LINE L1 5877 7041 -17 1 1222 428 258 32 48 chr12 83605353 83605479 -37652051 + MER96B DNA hAT 197 320 -97 1 1222 2241 139 34 3 chr12 83605480 83605834 -37651696 - ORR1B2 LTR MaLR 0 367 3 1 1222 3376 47 0 0 chr12 83605868 83606271 -37651259 + L1Md_T LINE L1 6178 6580 -2 1 1222 835 259 35 5 chr12 83606363 83606565 -37650965 + MTD LTR MaLR 12 219 -200 1 1222 9637 68 0 0 chr12 83606566 83607814 -37649716 - L1_Mm LINE L1 -2465 3418 2171 1 1222 13779 64 1 3 chr12 83607812 83609571 -37647959 + L1_Mm LINE L1 3414 5167 -716 1 1222 367 331 8 0 chr12 83609686 83609819 -37647711 - L1MC3 LINE L1 -217 7568 7435 1 1222 1743 227 148 29 chr12 83609823 83610345 -37647185 + RLTR31A_Mm LTR ERVK 1 584 0 1 1222 666 256 28 38 chr12 83610350 83610561 -37646969 - L1MC3 LINE L1 -366 7419 7211 1 1222 200 293 25 62 chr12 83610826 83610906 -37646624 + MIR3 SINE MIR 117 193 -15 1 1222 3250 25 0 3 chr12 83611017 83611383 -37646147 + RLTR10B2 LTR ERVK 1 365 0 1 1222 1263 148 4 63 chr12 83611816 83612054 -37645476 - URR1A DNA MER1_type 0 226 3 1 1222 6619 185 64 40 chr12 83614009 83615377 -37642153 - Lx7 LINE L1 0 7696 6296 1 1222 353 219 0 0 chr12 83616310 83616383 -37641147 + B3A SINE B2 82 154 -44 1 1222 481 30 15 15 chr12 83616387 83616455 -37641075 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1222 923 148 0 7 chr12 83616479 83616622 -37640908 + B1_Mus1 SINE Alu 5 146 -2 1 1222 2996 173 98 16 chr12 83617866 83618501 -37639029 + RMER6C LTR ERVK 1 687 -3 1 1222 783 171 192 39 chr12 83618503 83618685 -37638845 + B3 SINE B2 4 213 -3 1 1222 579 85 0 0 chr12 83618730 83618812 -37638718 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 1 1222 296 246 26 0 chr12 83618880 83618960 -37638570 - MIRb SINE MIR -132 136 49 1 1222 1029 65 0 0 chr12 83619044 83619182 -37638348 + (TCCC)n Simple_repeat Simple_repeat 2 139 0 1 1222 451 181 0 128 chr12 83619187 83619209 -37638321 + MT2B LTR ERVL 149 153 -448 1 1222 957 56 0 0 chr12 83619209 83619334 -37638196 + B1_Mus2 SINE Alu 2 126 -21 1 1222 324 113 0 13 chr12 83620332 83620392 -37637138 + B3A SINE B2 2 58 -158 1 1222 1133 102 209 0 chr12 83620600 83620787 -37636743 - URR1A DNA MER1_type 0 226 1 1 1222 1120 70 14 0 chr12 83621717 83621859 -37635671 - B1_Mm SINE Alu -3 144 1 1 1222 1080 209 24 5 chr12 83621941 83622153 -37635377 - B3 SINE B2 0 216 1 1 1222 315 0 0 0 chr12 83622378 83622413 -37635117 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1222 1168 48 0 7 chr12 83622683 83622829 -37634701 - B1_Mus2 SINE Alu -1 146 2 1 1222 994 270 47 41 chr12 83623400 83623717 -37633813 + MTE2a LTR MaLR 59 377 -2 1 1223 800 202 129 66 chr12 83624263 83624653 -37632877 + MT2A LTR ERVL 1 509 -92 1 1223 297 0 0 0 chr12 83624653 83624686 -37632844 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1223 535 185 138 7 chr12 83624686 83624710 -37632820 + MT2A LTR ERVL 465 488 -45 1 1223 337 179 24 0 chr12 83624710 83624794 -37632736 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1223 294 196 0 0 chr12 83624868 83624924 -37632606 - Lx8 LINE L1 -11 7462 7407 1 1223 747 220 0 14 chr12 83624961 83625104 -37632426 - B1_Mur1 SINE Alu -6 143 3 1 1223 207 281 20 40 chr12 83626003 83626103 -37631427 + CT-rich Low_complexity Low_complexity 2 99 0 1 1223 1853 170 106 23 chr12 83626393 83626779 -37630751 + MTD LTR MaLR 2 419 0 1 1223 237 286 31 118 chr12 83627350 83627477 -37630053 - MER5A DNA MER1_type -28 161 46 1 1223 884 279 0 0 chr12 83627726 83627927 -37629603 - B3 SINE B2 -14 202 2 1 1223 589 253 193 0 chr12 83627939 83628105 -37629425 - B3A SINE B2 0 198 1 1 1223 185 0 40 0 chr12 83628227 83628252 -37629278 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1223 195 361 28 0 chr12 83628778 83628886 -37628644 - MIRb SINE MIR -70 198 88 1 1223 465 138 0 0 chr12 83629305 83629385 -37628145 + (CATA)n Simple_repeat Simple_repeat 3 82 0 1 1223 220 325 36 36 chr12 83630205 83630288 -37627242 + ID SINE ID 2 84 -140 1 1223 232 366 53 9 chr12 83630614 83630727 -37626803 - LTR33A_ LTR ERVL -309 222 105 1 1223 518 0 0 16 chr12 83630954 83631017 -37626513 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1223 1040 240 73 11 chr12 83631133 83631464 -37626066 + MTD LTR MaLR 55 405 -14 1 1223 1188 55 0 7 chr12 83632290 83632438 -37625092 + B1_Mus2 SINE Alu 1 147 0 1 1223 265 325 0 0 chr12 83632788 83632865 -37624665 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1223 327 23 23 0 chr12 83632865 83632908 -37624622 + HAL1-3A_ME LINE L1 1976 2019 -839 2 1223 377 283 0 70 chr12 83632920 83633091 -37624439 - L1ME1 LINE L1 -208 5971 5813 2 1223 2294 271 77 23 chr12 83633211 83634005 -37623525 - Lx9 LINE L1 -163 7481 6645 2 1223 4870 295 66 20 chr12 83634967 83637279 -37620251 + L1M2 LINE L1 2269 4686 -1457 2 1223 1072 268 46 56 chr12 83637278 83637453 -37620077 + L1M2 LINE L1 4842 5028 -1115 2 1223 2104 108 9 61 chr12 83637453 83637797 -37619733 - ORR1A3 LTR MaLR 0 326 1 2 1223 1072 268 46 56 chr12 83637797 83638012 -37619518 + L1M2 LINE L1 5029 5228 -915 2 1223 574 279 44 23 chr12 83638016 83638247 -37619283 - L1M2 LINE L1 -858 5442 5205 2 1223 348 369 49 46 chr12 83638239 83638586 -37618944 - L1MD LINE L1 -1828 4318 3971 2 1223 272 310 10 5 chr12 83638597 83638696 -37618834 - B1F SINE Alu -17 100 1 2 1223 636 87 0 0 chr12 83639470 83639562 -37617968 + (TA)n Simple_repeat Simple_repeat 1 92 0 2 1223 242 306 12 0 chr12 83639600 83639685 -37617845 - L1MD LINE L1 -2516 3630 3545 2 1223 23 0 0 0 chr12 83639694 83639717 -37617813 + AT_rich Low_complexity Low_complexity 1 23 0 2 1223 1644 239 25 20 chr12 83639834 83640236 -37617294 - Lx9 LINE L1 -227 7417 7014 2 1223 318 289 127 7 chr12 83640426 83640576 -37616954 - L1MEc LINE L1 -2919 3400 3233 2 1223 236 364 142 3 chr12 83640721 83641030 -37616500 - L1M5 LINE L1 -3257 2889 2538 2 1223 304 330 9 28 chr12 83641095 83641204 -37616326 - PB1D7 SINE Alu -1 119 13 2 1223 750 248 29 5 chr12 83641254 83641461 -37616069 - B3 SINE B2 0 216 5 2 1223 252 294 68 7 chr12 83641479 83641626 -37615904 - L1MEc LINE L1 -3717 2602 2447 2 1223 268 146 62 0 chr12 83641743 83641791 -37615739 - L1MEc LINE L1 -5226 1174 1124 2 1223 818 153 30 80 chr12 83641933 83642132 -37615398 + B2_Mm2 SINE B2 1 189 -6 2 1223 371 240 104 104 chr12 83642381 83642544 -37614986 - RSINE1 SINE B4 0 165 3 2 1223 199 54 54 0 chr12 83643017 83643054 -37614476 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1223 21 36 0 0 chr12 83643218 83643246 -37614284 + AT_rich Low_complexity Low_complexity 1 28 0 2 1223 181 267 81 32 chr12 83643354 83643416 -37614114 - L2c LINE L2 -21 3354 3290 2 1223 5338 59 9 1 chr12 83643919 83644586 -37612944 + L1_Mus3 LINE L1 5952 6623 -15 2 1223 24 53 0 0 chr12 83645204 83645242 -37612288 + AT_rich Low_complexity Low_complexity 1 38 0 2 1223 195 299 90 0 chr12 83645334 83645401 -37612129 - L2c LINE L2 -318 3069 2997 2 1223 710 214 0 0 chr12 83645532 83645672 -37611858 + ID_B1 SINE B4 70 209 -15 2 1223 362 335 115 26 chr12 83648036 83648667 -37608863 + L1MD1 LINE L1 5256 5966 -213 2 1223 32 57 0 0 chr12 83648917 83648970 -37608560 + AT_rich Low_complexity Low_complexity 1 53 0 2 1223 552 297 0 12 chr12 83648970 83649137 -37608393 - RSINE1 SINE B4 0 165 1 2 1223 379 198 129 0 chr12 83649288 83649389 -37608141 + B3A SINE B2 1 114 -84 2 1223 227 103 26 0 chr12 83649389 83649428 -37608102 + (CCCCCT)n Simple_repeat Simple_repeat 5 44 0 2 1223 484 311 52 92 chr12 83649582 83649929 -37607601 - MLT1J LTR MaLR -175 337 5 2 1223 658 254 5 32 chr12 83650191 83650378 -37607152 - B3A SINE B2 -16 182 1 2 1223 506 296 112 11 chr12 83650432 83650610 -37606920 + L1MC1 LINE L1 6031 6232 -101 2 1223 228 67 0 0 chr12 83650610 83650640 -37606890 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1223 506 296 112 11 chr12 83650640 83650721 -37606809 + L1MC1 LINE L1 6233 6315 -18 2 1223 581 118 0 0 chr12 83650789 83650874 -37606656 + B1_Mus1 SINE Alu 18 102 -46 2 1223 198 0 0 0 chr12 83650893 83650915 -37606615 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1223 365 0 22 0 chr12 83650915 83650959 -37606571 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1223 370 348 59 39 chr12 83651698 83651952 -37605578 + LTR16C LTR ERVL 109 367 -122 2 1223 1783 131 73 24 chr12 83652078 83652408 -37605122 + ORR1B1 LTR MaLR 41 386 -8 2 1223 360 269 84 60 chr12 83652566 83652732 -37604798 - MER57C2 LTR ERV1 -16 418 249 2 1223 2534 151 11 9 chr12 83652750 83653205 -37604325 + RLTR28 LTR ERVL 27 482 -42 2 1223 189 0 0 0 chr12 83653913 83653934 -37603596 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1223 336 24 0 0 chr12 83653997 83654038 -37603492 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1223 814 182 7 13 chr12 83654198 83654348 -37603182 - B1_Mur1 SINE Alu 0 149 1 2 1223 402 274 50 91 chr12 83654604 83654901 -37602629 + Charlie21a DNA MER1_type 647 931 -282 2 1223 840 242 47 0 chr12 83654973 83655163 -37602367 + B3 SINE B2 5 203 -13 2 1223 226 311 36 15 chr12 83655161 83655298 -37602232 + Charlie21a DNA MER1_type 1010 1149 -64 2 1223 1136 158 258 7 chr12 83655972 83656259 -37601271 - ORR1B2 LTR MaLR -8 359 1 2 1223 224 338 0 0 chr12 83657174 83657242 -37600288 - PB1D10 SINE Alu -40 77 10 2 1223 224 167 61 0 chr12 83657247 83657313 -37600217 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1223 1628 289 69 50 chr12 83657387 83657434 -37600096 - Lx9 LINE L1 -86 7558 7511 2 1223 2172 96 48 3 chr12 83657434 83657747 -37599783 + ORR1A2 LTR MaLR 1 327 0 2 1223 1628 289 69 50 chr12 83657747 83658210 -37599320 - Lx9 LINE L1 -134 7510 7038 2 1223 2317 226 142 81 chr12 83658210 83659021 -37598509 + RMER13A LTR ERVK 1 860 0 2 1223 1628 289 69 50 chr12 83659021 83659248 -37598282 - Lx9 LINE L1 -607 7037 6806 2 1223 1592 94 51 25 chr12 83659252 83659526 -37598004 - L1_Mur3 LINE L1 -6655 1057 777 2 1223 394 256 24 16 chr12 83659956 83660079 -37597451 + LTR16D LTR ERVL 528 651 0 2 1223 506 270 31 69 chr12 83660493 83660652 -37596878 + RSINE1 SINE B4 3 155 -10 2 1223 633 227 16 0 chr12 83660848 83660976 -37596554 + RSINE1 SINE B4 3 132 -33 2 1223 1110 95 0 0 chr12 83660991 83661170 -37596360 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1223 216 0 0 0 chr12 83661199 83661223 -37596307 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1223 267 174 14 71 chr12 83663023 83663103 -37594427 - MLT1B LTR MaLR -41 349 253 2 1223 342 0 0 0 chr12 83663119 83663157 -37594373 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1223 509 268 8 8 chr12 83663182 83663306 -37594224 - B3A SINE B2 -73 125 2 2 1223 247 299 6 43 chr12 83663346 83663435 -37594095 + polypurine Low_complexity Low_complexity 1 85 0 2 1223 3295 41 5 15 chr12 83663435 83663835 -37593695 - MTA_Mm LTR MaLR 0 396 1 2 1223 247 316 0 12 chr12 83663835 83663857 -37593673 + polypurine Low_complexity Low_complexity 59 80 0 2 1223 853 214 12 0 chr12 83664666 83664834 -37592696 - B3 SINE B2 -46 170 1 2 1223 1012 219 42 5 chr12 83664944 83665168 -37592362 - MTE2b LTR MaLR -109 270 48 2 1223 234 0 0 0 chr12 83665467 83665493 -37592037 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 2 1223 220 351 63 11 chr12 83665538 83665633 -37591897 - B3A SINE B2 -98 100 1 2 1223 260 265 157 61 chr12 83665683 83665912 -37591618 + MER74C LTR ERVL 37 287 -173 2 1223 912 239 14 32 chr12 83666229 83666445 -37591085 - B3 SINE B2 -4 212 1 2 1223 300 215 12 25 chr12 83666590 83666671 -37590859 - ID4 SINE ID -2 81 2 2 1223 3088 44 54 3 chr12 83666783 83667174 -37590356 - RLTR10A LTR ERVK 0 411 1 2 1223 846 282 74 74 chr12 83668534 83668922 -37588608 - RLTR26 LTR ERVK -225 417 2 2 1223 1223 230 37 102 chr12 83669444 83669827 -37587703 + ORR1E LTR MaLR 1 358 -1 2 1223 592 246 108 0 chr12 83669885 83670052 -37587478 + RMER21B LTR ERV1 300 484 -358 2 1223 561 125 0 0 chr12 83670052 83670140 -37587390 + (CGTG)n Simple_repeat Simple_repeat 2 89 0 2 1223 241 232 11 68 chr12 83670191 83670279 -37587251 + RMER21B LTR ERV1 753 835 -112 2 1223 197 352 69 15 chr12 83670291 83670421 -37587109 + L2a LINE L2 3290 3426 0 2 1223 213 132 0 0 chr12 83670666 83670704 -37586826 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1223 695 203 45 45 chr12 83671096 83671251 -37586279 + B3A SINE B2 1 155 -43 2 1223 324 64 0 0 chr12 83671471 83671518 -37586012 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1223 468 223 151 113 chr12 83671842 83672206 -37585324 + RMER10A LTR ERVL 65 442 0 2 1223 246 200 68 41 chr12 83672207 83672280 -37585250 + B3 SINE B2 142 216 0 2 1223 244 275 95 68 chr12 83672360 83672434 -37585096 - RSINE1 SINE B4 0 165 90 2 1223 569 205 287 18 chr12 83672817 83672981 -37584549 - B3 SINE B2 -7 209 2 2 1223 1299 160 42 0 chr12 83673052 83673264 -37584266 - URR1A DNA MER1_type -1 225 5 2 1223 477 90 0 0 chr12 83673644 83673711 -37583819 + (GGA)n Simple_repeat Simple_repeat 1 67 0 2 1223 24 0 0 0 chr12 83674275 83674299 -37583231 + AT_rich Low_complexity Low_complexity 1 24 0 2 1223 1245 274 102 3 chr12 83674299 83674680 -37582850 - MTD LTR MaLR 0 419 1 2 1223 208 246 0 17 chr12 83674684 83674742 -37582788 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1223 265 338 0 91 chr12 83674745 83674833 -37582697 - B3A SINE B2 -117 81 2 2 1223 264 91 0 0 chr12 83675624 83675668 -37581862 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1223 468 0 0 0 chr12 83675668 83675720 -37581810 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1223 262 300 24 48 chr12 83677091 83677175 -37580355 - MER2 DNA MER2_type -263 82 1 2 1223 446 295 47 35 chr12 83677247 83677282 -37580248 + LTR82A LTR ERVL 494 667 -205 2 1223 482 285 44 0 chr12 83677282 83677419 -37580111 + LTR82B Low_complexity ERVL 489 631 -199 2 1223 272 296 25 57 chr12 83677615 83677737 -37579793 + Lx8 LINE L1 7146 7263 -210 2 1223 2201 96 16 3 chr12 83677737 83678052 -37579478 + ORR1A2 LTR MaLR 1 319 -8 2 1223 388 258 102 0 chr12 83678056 83678184 -37579346 + Lx8 LINE L1 7259 7399 -74 2 1223 455 343 93 32 chr12 83678297 83678544 -37578986 - LTR33 LTR ERVL -7 508 247 2 1223 280 282 18 72 chr12 83678558 83678669 -37578861 - LTR33 LTR ERVL -328 187 83 2 1223 349 247 13 20 chr12 83678998 83679151 -37578379 + CT-rich Low_complexity Low_complexity 2 153 0 2 1223 597 311 13 7 chr12 83679645 83679794 -37577736 + MER2 DNA MER2_type 188 337 -8 2 1223 418 82 23 23 chr12 83679919 83680006 -37577524 - L1Md_F2 LINE L1 0 6582 6496 2 1223 580 359 92 17 chr12 83680774 83681185 -37576345 + MLT1L LTR MaLR 166 607 -3 2 1223 318 134 310 26 chr12 83682476 83682592 -37574938 - B2_Mm2 SINE B2 0 195 47 3 1223 1091 103 91 0 chr12 83682605 83682770 -37574760 - B2_Mm2 SINE B2 -14 181 2 3 1223 343 107 583 0 chr12 83682786 83682870 -37574660 - B2_Mm2 SINE B2 -47 148 16 3 1223 3896 147 73 77 chr12 83682864 83683759 -37573771 - ORR1B1-int LTR MaLR -454 1509 619 3 1223 3619 147 45 10 chr12 83683805 83684423 -37573107 - ORR1B1-int LTR MaLR -1323 640 1 3 1223 2019 128 96 8 chr12 83684428 83684782 -37572748 - ORR1B1 LTR MaLR -9 385 1 3 1223 447 19 0 0 chr12 83685479 83685531 -37571999 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1223 236 317 55 55 chr12 83685705 83685832 -37571698 - ORR1E LTR MaLR -162 197 71 3 1223 459 204 11 54 chr12 83686353 83686446 -37571084 - 5S rRNA rRNA -31 90 2 3 1223 1373 275 78 31 chr12 83686737 83686850 -37570680 + RMER5 LTR ERV1 1 114 -420 3 1223 937 149 7 20 chr12 83686850 83687001 -37570529 + B1_Mur4 SINE Alu 2 150 0 3 1223 1373 275 78 31 chr12 83687001 83687397 -37570133 + RMER5 LTR ERV1 115 534 0 3 1223 672 93 0 0 chr12 83688191 83688288 -37569242 + (TATG)n Simple_repeat Simple_repeat 2 98 0 3 1223 589 279 15 0 chr12 83688290 83688426 -37569104 - RSINE1 SINE B4 -25 140 3 3 1223 569 229 51 0 chr12 83688429 83688547 -37568983 - ID_B1 SINE B4 -18 206 83 3 1223 277 243 39 39 chr12 83689781 83689858 -37567672 + ID_B1 SINE B4 82 158 -66 3 1223 215 203 16 33 chr12 83690136 83690197 -37567333 + G-rich Low_complexity Low_complexity 1 60 0 3 1223 975 120 0 16 chr12 83690668 83690915 -37566615 + (TCCC)n Simple_repeat Simple_repeat 1 242 0 3 1223 303 295 8 82 chr12 83690923 83691045 -37566485 - PB1 SINE Alu -13 114 2 3 1223 554 319 62 11 chr12 83691401 83691677 -37565853 - B4A SINE B4 -2 290 1 3 1223 415 290 201 29 chr12 83691718 83691962 -37565568 + B4 SINE B4 7 292 0 3 1223 529 215 16 24 chr12 83691971 83692222 -37565308 + (CATA)n Simple_repeat Simple_repeat 1 248 0 3 1223 268 83 20 20 chr12 83692660 83692709 -37564821 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1223 1205 234 128 98 chr12 83693128 83693272 -37564258 + MTD LTR MaLR 1 114 -305 3 1223 240 35 0 0 chr12 83693272 83693301 -37564229 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1223 1205 234 128 98 chr12 83693301 83693563 -37563967 + MTD LTR MaLR 115 418 -1 3 1223 1468 84 16 0 chr12 83693574 83693765 -37563765 - B2_Mm2 SINE B2 0 195 2 3 1223 1302 179 23 9 chr12 83693903 83694123 -37563407 - ORR1C2 LTR MaLR -117 267 45 3 1223 414 0 0 0 chr12 83694269 83694315 -37563215 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1223 2148 158 63 6 chr12 83694365 83694728 -37562802 + ORR1C2 LTR MaLR 1 384 0 3 1223 5758 202 56 28 chr12 83694728 83696060 -37561470 + ORR1C2-int LTR MaLR 1 1370 0 3 1223 906 121 0 0 chr12 83696060 83696192 -37561338 + ORR1C2 LTR MaLR 1 132 -252 3 1223 266 310 97 29 chr12 83696433 83696536 -37560994 - RSINE1 SINE B4 -53 112 3 3 1223 454 275 80 7 chr12 83696551 83696701 -37560829 - HERVL74-int LTR ERVL -3873 1812 1652 3 1223 881 181 0 13 chr12 83696835 83696986 -37560544 + B1_Mur3 SINE Alu 1 149 0 3 1223 392 210 79 92 chr12 83697144 83697336 -37560194 + L1M5 LINE L1 5365 5553 -626 3 1223 1433 166 47 64 chr12 83697339 83697635 -37559895 + ORR1C2 LTR MaLR 92 382 -2 3 1223 295 337 84 51 chr12 83697743 83697921 -37559609 + MER34A LTR ERV1 4 187 -384 3 1223 277 246 29 0 chr12 83697981 83698050 -37559480 + MER34A LTR ERV1 340 410 -177 3 1223 579 15 0 0 chr12 83698114 83698182 -37559348 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1223 214 139 0 0 chr12 83698182 83698218 -37559312 - ID4_ SINE ID -46 37 2 3 1223 278 298 20 60 chr12 83699076 83699176 -37558354 + LTR82B Low_complexity ERVL 278 373 -457 3 1223 232 231 77 0 chr12 83699675 83699740 -37557790 - LTR82B Low_complexity ERVL -683 147 78 3 1223 246 279 64 58 chr12 83699848 83700004 -37557526 + MER113 DNA MER1_type 295 451 -70 3 1223 1317 206 50 19 chr12 83700024 83700340 -37557190 + MTD LTR MaLR 13 318 -82 3 1223 466 323 112 67 chr12 83700359 83700671 -37556859 - ORR1E LTR MaLR -4 355 30 3 1223 1253 132 108 0 chr12 83700864 83701068 -37556462 + URR1A DNA MER1_type 1 226 0 3 1223 342 67 0 0 chr12 83702000 83702045 -37555485 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1223 243 61 0 0 chr12 83702662 83702695 -37554835 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1223 666 291 47 128 chr12 83702748 83703067 -37554463 + MLT1B LTR MaLR 74 366 -24 3 1223 1110 165 87 0 chr12 83703071 83703277 -37554253 - URR1B DNA MER1_type -1 224 1 3 1223 1113 231 99 118 chr12 83703409 83703920 -37553610 - RMER4B LTR ERVK 0 611 1 3 1223 227 318 66 33 chr12 83704132 83704223 -37553307 + MamGypLTR3 LTR Gypsy 162 255 -584 3 1223 216 382 18 0 chr12 83704390 83704500 -37553030 + MER5A DNA MER1_type 49 160 -29 3 1223 809 174 7 14 chr12 83704610 83704750 -37552780 + RSINE1 SINE B4 4 142 -23 3 1223 224 340 29 87 chr12 83704750 83704780 -37552750 + B3A SINE B2 3 160 -38 3 1223 473 65 26 0 chr12 83704780 83704857 -37552673 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 3 1223 224 340 29 87 chr12 83704857 83704892 -37552638 + B3A SINE B2 161 196 -2 3 1223 235 288 101 31 chr12 83705439 83705568 -37551962 + MIR3 SINE MIR 1 138 -70 3 1223 311 275 8 55 chr12 83706552 83706679 -37550851 + G-rich Low_complexity Low_complexity 5 125 0 3 1223 315 104 0 0 chr12 83706874 83706922 -37550608 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1223 991 188 20 54 chr12 83707036 83707239 -37550291 + B3A SINE B2 2 197 -1 3 1223 244 274 26 78 chr12 83707284 83707328 -37550202 + LTR82B Low_complexity ERVL 208 252 -578 3 1223 2205 159 5 24 chr12 83707328 83707709 -37549821 + ORR1D1 LTR MaLR 1 374 0 3 1223 244 274 26 78 chr12 83707709 83707779 -37549751 + LTR82B Low_complexity ERVL 253 316 -514 3 1223 413 237 0 0 chr12 83707781 83707857 -37549673 + ID4 SINE ID 4 79 -4 3 1223 561 203 30 108 chr12 83708502 83708728 -37548802 + L1MA8 LINE L1 5074 5221 -919 3 1223 1471 0 0 32 chr12 83708728 83708913 -37548617 + (GGGAGA)n Simple_repeat Simple_repeat 1 179 0 3 1223 965 256 29 109 chr12 83708913 83709240 -37548290 + L1MA8 LINE L1 5222 5562 -738 3 1223 343 206 0 60 chr12 83709250 83709317 -37548213 + B1F1 SINE Alu 2 64 -85 3 1223 450 294 58 43 chr12 83709318 83709506 -37548024 + L1MA8 LINE L1 5638 5828 -463 3 1223 566 302 155 12 chr12 83709509 83709760 -37547770 + B4A SINE B4 2 288 -4 3 1223 676 260 70 59 chr12 83710079 83710365 -37547165 - B4A SINE B4 0 292 4 3 1223 383 367 63 14 chr12 83710835 83711056 -37546474 + L2 LINE L2 2748 2979 -440 3 1223 279 295 48 0 chr12 83711282 83711387 -37546143 - B1F2 SINE Alu -34 115 6 3 1223 569 246 0 0 chr12 83711425 83711535 -37545995 - PB1D10 SINE Alu -7 110 1 3 1223 36 23 0 0 chr12 83711535 83711578 -37545952 + AT_rich Low_complexity Low_complexity 1 43 0 3 1223 457 329 42 72 chr12 83711834 83712001 -37545529 - RSINE1 SINE B4 0 165 4 3 1223 362 226 0 23 chr12 83712001 83712087 -37545443 - L1MA9 LINE L1 -361 5951 5868 3 1223 1985 170 59 6 chr12 83712087 83712442 -37545088 + ORR1D1 LTR MaLR 1 374 0 3 1223 311 288 55 0 chr12 83712451 83712524 -37545006 - PB1D7 SINE Alu -43 77 1 3 1223 1446 278 15 26 chr12 83712605 83713060 -37544470 - L1MA9 LINE L1 -470 5821 5372 3 1223 713 326 76 17 chr12 83713083 83713636 -37543894 - L1MA9 LINE L1 -842 5301 4719 3 1223 291 54 0 0 chr12 83713681 83713718 -37543812 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1223 180 273 127 25 chr12 83714372 83714451 -37543079 - MER5B DNA MER1_type -18 160 74 3 1223 372 94 0 0 chr12 83714573 83714626 -37542904 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1223 614 203 16 41 chr12 83714628 83714751 -37542779 - RSINE1 SINE B4 -25 140 21 3 1223 446 246 184 72 chr12 83714887 83715137 -37542393 + B4 SINE B4 4 281 -11 3 1223 982 187 65 5 chr12 83715754 83715953 -37541577 + B3 SINE B2 1 211 -5 3 1223 563 251 193 11 chr12 83717060 83717241 -37540289 - ID_B1 SINE B4 -9 215 2 3 1223 21 0 0 0 chr12 83717983 83718004 -37539526 + GC_rich Low_complexity Low_complexity 1 21 0 3 1223 423 0 0 0 chr12 83720061 83720108 -37537422 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1223 401 279 98 0 chr12 83721579 83721701 -37535829 + MER2 DNA MER2_type 1 134 -211 3 1223 1006 261 37 132 chr12 83721701 83722050 -37535480 + MTE2a LTR MaLR 2 319 -60 3 1223 339 25 0 0 chr12 83722050 83722090 -37535440 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1223 189 0 0 0 chr12 83722090 83722110 -37535420 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1223 1006 261 37 132 chr12 83722110 83722134 -37535396 + MTE2a LTR MaLR 320 337 -42 3 1223 477 0 0 0 chr12 83722134 83722187 -37535343 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3 1223 1006 261 37 132 chr12 83722187 83722221 -37535309 + MTE2a LTR MaLR 338 371 -8 3 1223 372 319 168 0 chr12 83722221 83722406 -37535124 + MER2 DNA MER2_type 129 344 -1 3 1223 303 254 159 26 chr12 83722537 83722650 -37534880 - MIRb SINE MIR -95 173 46 3 1223 797 264 20 10 chr12 83722900 83723095 -37534435 + B4A SINE B4 34 230 -62 3 1223 607 311 0 0 chr12 83723095 83723243 -37534287 + RSINE1 SINE B4 3 150 -15 3 1223 322 200 0 53 chr12 83723404 83723594 -37533936 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1223 1813 214 16 20 chr12 83724124 83724546 -37532984 + MTC LTR MaLR 5 407 -14 3 1223 463 215 0 0 chr12 83724582 83724661 -37532869 - ID4_ SINE ID -4 79 1 3 1223 576 106 0 0 chr12 83724661 83724746 -37532784 + (TCC)n Simple_repeat Simple_repeat 1 85 0 3 1223 353 231 45 27 chr12 83724746 83724857 -37532673 - PB1D10 SINE Alu -2 115 3 3 1223 294 298 95 0 chr12 83725294 83725378 -37532152 - PB1 SINE Alu -10 117 26 3 1223 266 0 0 29 chr12 83725536 83725571 -37531959 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1223 243 0 0 0 chr12 83725633 83725660 -37531870 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1223 1975 206 78 32 chr12 83725686 83726188 -37531342 - RMER5 LTR ERV1 -9 525 1 3 1223 246 303 40 0 chr12 83726363 83726439 -37531091 + ID4_ SINE ID 2 80 -3 3 1223 226 336 102 22 chr12 83726580 83726717 -37530813 + L2a LINE L2 3278 3425 -1 3 1223 287 232 57 14 chr12 83727005 83727075 -37530455 - B1F2 SINE Alu -76 73 1 3 1223 432 0 0 0 chr12 83727369 83727417 -37530113 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 4 1223 369 176 0 0 chr12 83729066 83729140 -37528390 + (TGG)n Simple_repeat Simple_repeat 1 74 0 4 1223 250 326 63 73 chr12 83729582 83729787 -37527743 - L1ME3A LINE L1 -17 7016 6814 4 1223 479 300 23 12 chr12 83730068 83730240 -37527290 - L1ME3A LINE L1 -869 6435 6262 4 1223 321 26 0 0 chr12 83731359 83731397 -37526133 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1223 396 82 0 0 chr12 83731458 83731519 -37526011 + (T)n Simple_repeat Simple_repeat 1 61 0 4 1223 754 0 0 0 chr12 83731521 83731612 -37525918 - L1Md_T LINE L1 0 6582 6492 4 1223 1063 311 107 24 chr12 83731695 83732361 -37525169 - L1ME3A LINE L1 -1145 5861 5141 4 1223 342 0 0 0 chr12 83732372 83732410 -37525120 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1223 487 296 48 72 chr12 83732445 83732696 -37524834 - B4A SINE B4 0 292 48 4 1223 3393 261 118 12 chr12 83732724 83733128 -37524402 - Lx8 LINE L1 -48 7425 6970 4 1223 450 0 0 0 chr12 83733128 83733178 -37524352 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1223 3393 261 118 12 chr12 83733178 83733821 -37523709 - Lx8 LINE L1 -504 6969 6269 4 1223 371 290 127 33 chr12 83733842 83733992 -37523538 + Lx8 LINE L1 6098 6261 -1212 4 1223 467 306 112 16 chr12 83733988 83734310 -37523220 - L1ME3A LINE L1 -1862 5144 4792 4 1223 38734 30 1 0 chr12 83734615 83741478 -37516052 - L1Md_T LINE L1 0 6585 1 4 1223 598 302 55 6 chr12 83741598 83741781 -37515749 - B3A SINE B2 -5 193 2 4 1223 455 306 46 33 chr12 83741893 83742045 -37515485 - RSINE1 SINE B4 0 165 12 4 1223 596 215 22 22 chr12 83742062 83742200 -37515330 - ID_B1 SINE B4 -6 218 81 4 1223 441 36 0 0 chr12 83742256 83742311 -37515219 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1223 860 65 8 0 chr12 83742707 83742831 -37514699 + (CCAA)n Simple_repeat Simple_repeat 4 128 0 4 1223 598 320 86 4 chr12 83742890 83743169 -37514361 - MER58B DNA MER1_type -38 303 2 4 1223 181 109 21 21 chr12 83743285 83743332 -37514198 + T-rich Low_complexity Low_complexity 3 49 0 4 1223 280 272 97 0 chr12 83743337 83743440 -37514090 - PB1D10 SINE Alu -1 116 4 4 1223 311 255 86 1 chr12 83743544 83743658 -37513872 - L1ME3A LINE L1 -4533 2493 2283 4 1223 760 287 6 0 chr12 83744204 83744371 -37513159 + B3A SINE B2 1 168 -30 4 1223 567 71 0 0 chr12 83744374 83744459 -37513071 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1223 458 114 11 0 chr12 83744459 83744547 -37512983 + (GA)n Simple_repeat Simple_repeat 1 89 0 4 1223 353 270 192 80 chr12 83744592 83744697 -37512833 - L1ME3A LINE L1 -4967 1520 1421 4 1223 627 26 0 0 chr12 83744697 83744774 -37512756 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1223 270 56 0 0 chr12 83744774 83744809 -37512721 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1223 353 270 192 80 chr12 83744809 83744822 -37512708 - L1MCb LINE L1 -5067 978 978 4 1223 1001 244 45 39 chr12 83744822 83745108 -37512422 - B4A SINE B4 -3 289 2 4 1223 353 270 192 80 chr12 83745108 83745361 -37512169 - L1ME3A LINE L1 -5067 1420 1106 4 1223 186 306 68 61 chr12 83746942 83747074 -37510456 + MIRc SINE MIR 55 187 -81 4 1223 1210 183 9 0 chr12 83747502 83747721 -37509809 - URR1B DNA MER1_type 0 225 5 4 1223 1325 25 0 6 chr12 83748465 83748627 -37508903 + (TCTCCC)n Simple_repeat Simple_repeat 3 163 0 4 1223 228 196 39 0 chr12 83748688 83748739 -37508791 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 4 1223 296 316 48 87 chr12 83748746 83748823 -37508707 - B3A SINE B2 -15 201 2 4 1223 563 269 23 8 chr12 83748823 83748954 -37508576 - B4 SINE B4 -158 134 2 4 1223 475 255 41 28 chr12 83749526 83749671 -37507859 - B1F2 SINE Alu -2 147 1 4 1223 339 174 58 0 chr12 83749752 83749821 -37507709 - L2a LINE L2 -2 3424 3352 4 1223 340 141 30 30 chr12 83749832 83749898 -37507632 + B4 SINE B4 162 227 -65 4 1223 1830 273 69 59 chr12 83751483 83751532 -37505998 - L1MB5 LINE L1 0 6174 6137 4 1223 944 178 194 0 chr12 83751532 83751712 -37505818 + B3 SINE B2 2 216 0 4 1223 1830 273 69 59 chr12 83751712 83752354 -37505176 - L1MB5 LINE L1 -38 6136 5476 4 1223 422 129 0 0 chr12 83752376 83752446 -37505084 - B1_Mus2 SINE Alu -6 141 72 4 1223 387 119 0 0 chr12 83754097 83754164 -37503366 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1223 1062 224 9 9 chr12 83754759 83754975 -37502555 - B3 SINE B2 0 216 1 4 1224 396 265 113 6 chr12 83755795 83755975 -37501555 - L1MA5 LINE L1 -5 6295 6098 4 1224 261 0 0 0 chr12 83756369 83756398 -37501132 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1224 369 0 0 0 chr12 83756664 83756705 -37500825 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1224 1599 190 14 7 chr12 83756710 83757002 -37500528 - MTC LTR MaLR -12 409 116 4 1224 447 262 28 18 chr12 83757518 83757627 -37499903 + ID_B1 SINE B4 114 223 -1 4 1224 198 143 0 0 chr12 83759024 83759059 -37498471 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1224 383 0 21 0 chr12 83760144 83760191 -37497339 + (TTA)n Simple_repeat Simple_repeat 1 48 0 4 1224 1279 83 28 0 chr12 83760191 83760372 -37497158 - L1Md_F2 LINE L1 -23 6559 6374 4 1224 1553 47 0 0 chr12 83760366 83760557 -37496973 + L1Md_F2 LINE L1 5878 6068 -514 4 1224 449 303 76 34 chr12 83760656 83761011 -37496519 - L1MEg LINE L1 -4521 1563 1194 4 1224 382 198 0 58 chr12 83761158 83761244 -37496286 - B4A SINE B4 -203 89 9 4 1224 27 62 0 0 chr12 83761491 83761539 -37495991 + AT_rich Low_complexity Low_complexity 1 48 0 4 1224 216 0 0 0 chr12 83761627 83761651 -37495879 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1224 309 291 10 10 chr12 83761657 83761761 -37495769 - Lx7 LINE L1 -371 7325 7222 4 1224 583 268 89 93 chr12 83761772 83762031 -37495499 - B4A SINE B4 -33 259 2 4 1224 325 219 14 0 chr12 83762594 83762667 -37494863 - PB1D10 SINE Alu -18 99 26 4 1224 704 309 48 43 chr12 83763151 83763547 -37493983 - MLT1C LTR MaLR 0 467 70 4 1224 240 278 42 62 chr12 83764140 83764236 -37493294 - Tigger5 DNA MER2_type -27 2379 2286 4 1224 923 254 10 0 chr12 83764945 83765146 -37492384 - ID_B1 SINE B4 -17 207 5 4 1224 257 0 0 29 chr12 83765157 83765191 -37492339 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 4 1224 1248 58 26 0 chr12 83766054 83766210 -37491320 - L1Md_F2 LINE L1 -310 6272 6113 4 1224 2318 70 42 27 chr12 83766210 83766546 -37490984 + L1Md_F2 LINE L1 6241 6581 -1 4 1224 189 159 0 0 chr12 83766649 83766693 -37490837 + A-rich Low_complexity Low_complexity 1 44 0 4 1224 238 294 66 7 chr12 83766830 83766967 -37490563 - MLT1D LTR MaLR -302 203 59 4 1224 912 235 5 11 chr12 83767485 83767674 -37489856 - ID_B1 SINE B4 -5 219 32 4 1224 559 277 59 80 chr12 83767924 83768211 -37489319 + MER58B DNA MER1_type 47 327 -14 4 1224 789 231 11 11 chr12 83769050 83769238 -37488292 + MER2 DNA MER2_type 158 345 0 4 1224 258 278 92 10 chr12 83770301 83770399 -37487131 - B1F1 SINE Alu -42 107 2 4 1224 342 0 0 0 chr12 83770800 83770838 -37486692 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1224 382 242 280 0 chr12 83771409 83771557 -37485973 - MER58A DNA MER1_type -17 207 19 4 1224 218 290 28 18 chr12 83771703 83771812 -37485718 - MIRb SINE MIR -66 202 93 4 1224 396 0 0 0 chr12 83771987 83772031 -37485499 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1224 447 254 245 7 chr12 83772408 83772551 -37484979 - ID_B1 SINE B4 -46 178 2 4 1224 527 66 13 0 chr12 83772593 83772669 -37484861 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 4 1224 24 53 0 0 chr12 83773426 83773464 -37484066 + AT_rich Low_complexity Low_complexity 1 38 0 4 1224 1106 179 71 0 chr12 83773470 83773666 -37483864 - B3 SINE B2 -6 210 1 4 1224 391 326 78 0 chr12 83773709 83773838 -37483692 - RSINE1 SINE B4 0 165 27 4 1224 480 348 116 57 chr12 83774510 83774673 -37482857 + MLT1C LTR MaLR 22 170 -297 4 1224 1169 68 0 0 chr12 83774673 83774821 -37482709 + B1_Mus1 SINE Alu 1 148 0 4 1224 480 348 116 57 chr12 83774821 83775078 -37482452 + MLT1C LTR MaLR 171 467 0 4 1224 260 318 57 29 chr12 83775588 83775763 -37481767 + MIR SINE MIR 71 250 -12 4 1224 333 125 0 0 chr12 83776685 83776741 -37480789 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1224 1046 233 31 47 chr12 83776753 83777010 -37480520 - B4 SINE B4 0 292 40 4 1224 181 185 74 0 chr12 83777024 83777078 -37480452 - L2b LINE L2 -243 3132 3075 4 1224 355 305 21 0 chr12 83777149 83777244 -37480286 - MER58A DNA MER1_type -120 104 8 4 1224 1566 80 26 4 chr12 83777343 83777570 -37479960 + L1_Mus3 LINE L1 6407 6638 0 4 1224 843 64 0 0 chr12 83777786 83777896 -37479634 + (TTCTC)n Simple_repeat Simple_repeat 4 113 0 4 1224 369 0 0 0 chr12 83777898 83777939 -37479591 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 4 1224 465 290 0 0 chr12 83777939 83778046 -37479484 - PB1D7 SINE Alu -12 108 2 4 1224 742 282 5 31 chr12 83778066 83778260 -37479270 - B3A SINE B2 0 198 10 4 1224 231 36 0 0 chr12 83778281 83778309 -37479221 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 4 1224 314 267 92 12 chr12 83779097 83779260 -37478270 - MER2 DNA MER2_type -59 286 111 4 1224 252 274 30 75 chr12 83780368 83780502 -37477028 - MIRc SINE MIR -45 223 96 4 1224 626 316 110 13 chr12 83780942 83781243 -37476287 + MER2 DNA MER2_type 10 339 -6 4 1224 326 204 31 0 chr12 83781680 83781765 -37475765 - L1MB8 LINE L1 -1 6183 6093 4 1224 219 143 0 45 chr12 83782560 83782604 -37474926 + T-rich Low_complexity Low_complexity 4 45 0 4 1224 444 225 0 0 chr12 83782605 83782694 -37474836 - PB1D7 SINE Alu -1 119 31 4 1224 698 249 162 82 chr12 83782781 83783109 -37474421 - ORR1E LTR MaLR -4 355 2 4 1224 334 306 107 82 chr12 83783274 83783602 -37473928 + MLT1A0 LTR MaLR 2 337 -28 4 1224 189 0 0 0 chr12 83783869 83783890 -37473640 + (CAAAC)n Simple_repeat Simple_repeat 3 23 0 4 1224 530 256 54 0 chr12 83783894 83784023 -37473507 + B1F SINE Alu 1 136 -13 4 1224 382 200 80 0 chr12 83784651 83784726 -37472804 - ID4 SINE ID -1 82 2 4 1224 274 374 24 37 chr12 83786130 83786294 -37471236 + MLT1F LTR MaLR 105 266 -282 5 1224 352 292 177 20 chr12 83786524 83786772 -37470758 + MLT1F-int LTR MaLR 1 287 -1202 5 1224 1016 313 151 35 chr12 83787081 83787928 -37469602 + MLT1F-int LTR MaLR 429 1373 -116 5 1224 740 286 142 45 chr12 83787988 83788368 -37469162 + MLT1F LTR MaLR 11 427 -121 5 1224 293 227 109 40 chr12 83788752 83788853 -37468677 + MER68 LTR ERVL 438 545 -18 5 1224 2475 153 21 17 chr12 83789178 83789596 -37467934 - MTC LTR MaLR -1 420 1 5 1224 315 0 0 0 chr12 83789646 83789681 -37467849 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1224 2085 140 75 8 chr12 83789774 83790134 -37467396 + ORR1C2 LTR MaLR 1 384 0 5 1224 186 43 0 0 chr12 83790297 83790320 -37467210 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 5 1224 408 40 0 0 chr12 83790801 83790851 -37466679 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1224 281 258 8 77 chr12 83794217 83794347 -37463183 - MARNA DNA Mariner -95 491 371 5 1224 262 227 88 49 chr12 83794925 83795028 -37462502 - L1MC LINE L1 -324 5855 5750 5 1224 542 300 79 38 chr12 83795199 83795535 -37461995 - ORR1E LTR MaLR -9 370 1 5 1224 1273 34 0 0 chr12 83795555 83795702 -37461828 + B1_Mus2 SINE Alu 1 147 0 5 1224 319 133 11 22 chr12 83795702 83795794 -37461736 + A-rich Low_complexity Low_complexity 6 96 0 5 1224 873 239 53 19 chr12 83796481 83796690 -37460840 - B3 SINE B2 0 216 1 5 1224 384 220 17 0 chr12 83796698 83796799 -37460731 - B1F1 SINE Alu -2 125 15 5 1224 302 276 188 13 chr12 83797408 83797562 -37459968 + MER58A DNA MER1_type 42 222 -2 5 1224 967 102 19 6 chr12 83798830 83798988 -37458542 + (GGAGA)n Simple_repeat Simple_repeat 2 161 0 5 1224 330 72 57 14 chr12 83798990 83799060 -37458470 + (CAGAGA)n Simple_repeat Simple_repeat 4 76 0 5 1224 2623 154 57 21 chr12 83799092 83799564 -37457966 - Lx9 LINE L1 -248 7396 6908 5 1224 247 248 0 28 chr12 83800614 83800689 -37456841 - MIRm SINE MIR -1 267 202 5 1224 273 352 115 56 chr12 83801221 83801507 -37456023 + MARNA DNA Mariner 95 397 -189 5 1224 237 224 0 116 chr12 83801926 83802012 -37455518 + L2c LINE L2 3309 3384 -3 5 1224 12588 60 0 8 chr12 83803242 83805530 -37452000 - L1Md_F2 LINE L1 0 6582 4317 5 1224 234 322 22 11 chr12 83805868 83805959 -37451571 - MIR SINE MIR -170 92 1 5 1224 497 80 13 0 chr12 83806598 83806673 -37450857 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1224 836 296 71 83 chr12 83807163 83807299 -37450231 + MLT2B3 LTR ERVL 114 261 -293 5 1224 1476 45 20 5 chr12 83807299 83807501 -37450029 - L1_Mus3 LINE L1 -3 6635 6431 5 1224 836 296 71 83 chr12 83807501 83807799 -37449731 + MLT2B3 LTR ERVL 262 543 -11 5 1224 586 261 149 56 chr12 83807811 83808099 -37449431 - L1MCb LINE L1 -4963 1082 768 5 1224 983 150 0 16 chr12 83808112 83808295 -37449235 + CT-rich Low_complexity Low_complexity 1 180 0 5 1224 604 196 9 0 chr12 83808477 83808584 -37448946 + PB1D9 SINE Alu 6 113 -7 5 1224 279 0 0 0 chr12 83808590 83808621 -37448909 + (CCAA)n Simple_repeat Simple_repeat 4 34 0 5 1224 366 51 24 49 chr12 83808626 83808708 -37448822 + (CAAA)n Simple_repeat Simple_repeat 4 83 0 5 1224 431 256 101 0 chr12 83808884 83809013 -37448517 + MLT1A LTR MaLR 10 151 -223 5 1224 228 295 22 11 chr12 83809035 83809124 -37448406 + CT-rich Low_complexity Low_complexity 2 91 0 5 1224 272 256 66 11 chr12 83809222 83809313 -37448217 + MLT1A LTR MaLR 284 379 -11 5 1224 301 280 29 20 chr12 83809353 83809455 -37448075 - L1MCb LINE L1 -5701 344 242 5 1224 180 0 0 0 chr12 83809849 83809869 -37447661 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1224 720 33 0 0 chr12 83809870 83809962 -37447568 - B1_Mus2 SINE Alu -12 135 44 5 1224 433 302 91 14 chr12 83810136 83810344 -37447186 - L1MC3 LINE L1 -41 7744 7521 5 1224 637 272 208 15 chr12 83810317 83810653 -37446877 - L1MC3 LINE L1 -477 7308 6908 5 1224 3490 294 52 20 chr12 83811422 83812593 -37444937 - Lx8 LINE L1 -29 7444 6236 5 1224 1102 272 63 17 chr12 83812716 83813128 -37444402 + L1MA5 LINE L1 5429 5845 -455 5 1224 180 0 0 0 chr12 83813603 83813623 -37443907 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1224 679 241 6 56 chr12 83813640 83813777 -37443753 - B3A SINE B2 -27 171 43 5 1224 2264 144 68 5 chr12 83813777 83814147 -37443383 + ORR1B1 LTR MaLR 2 394 0 5 1224 679 241 6 56 chr12 83814147 83814189 -37443341 - B3A SINE B2 -156 42 1 5 1224 973 184 35 40 chr12 83814671 83814898 -37442632 + URR1A DNA MER1_type 1 226 0 5 1224 279 0 0 0 chr12 83814981 83815012 -37442518 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1224 21 82 0 0 chr12 83815915 83815964 -37441566 + AT_rich Low_complexity Low_complexity 1 49 0 5 1224 1736 92 0 0 chr12 83816317 83816567 -37440963 - MTC LTR MaLR 0 421 172 5 1224 359 302 158 20 chr12 83816737 83816933 -37440597 - ID_B1 SINE B4 -1 223 1 5 1224 393 232 176 0 chr12 83819125 83819250 -37438280 - RSINE1 SINE B4 -4 161 15 5 1224 493 302 140 25 chr12 83819604 83819889 -37437641 - MER44A DNA MER2_type -13 326 9 5 1224 1223 48 0 0 chr12 83819953 83820100 -37437430 - B1_Mus2 SINE Alu 0 147 1 5 1224 532 239 39 26 chr12 83820675 83820830 -37436700 - MER5B DNA MER1_type -18 160 4 5 1224 1030 251 57 46 chr12 83821214 83821564 -37435966 - ORR1E LTR MaLR 0 359 6 5 1224 2513 238 50 79 chr12 83822180 83822875 -37434655 - Lx6 LINE L1 -2 7458 6784 5 1224 291 293 27 0 chr12 83823607 83823682 -37433848 - ID4_ SINE ID -2 81 5 5 1224 302 261 43 11 chr12 83823712 83823805 -37433725 - B1F2 SINE Alu -39 110 15 5 1224 1113 164 27 49 chr12 83824546 83824771 -37432759 - URR1A DNA MER1_type 0 226 7 5 1224 363 315 35 18 chr12 83824881 83825052 -37432478 + RMER15 LTR ERVL 393 566 -9 5 1224 227 330 45 0 chr12 83825445 83825533 -37431997 - MIR3 SINE MIR -47 161 70 5 1224 255 103 0 0 chr12 83825774 83825813 -37431717 + (CCCCCA)n Simple_repeat Simple_repeat 2 40 0 5 1224 467 235 197 58 chr12 83826094 83826388 -37431142 + MLT1A LTR MaLR 4 338 -36 5 1224 37 109 0 0 chr12 83826709 83826865 -37430665 + AT_rich Low_complexity Low_complexity 1 156 0 5 1224 333 0 0 0 chr12 83826987 83827024 -37430506 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 5 1224 721 230 7 0 chr12 83827068 83827216 -37430314 - B3 SINE B2 -67 149 1 5 1224 30 27 0 0 chr12 83827574 83827611 -37429919 + AT_rich Low_complexity Low_complexity 1 37 0 5 1224 576 294 28 19 chr12 83827613 83827828 -37429702 - MT2A LTR ERVL -72 461 245 5 1224 365 70 18 0 chr12 83827829 83827886 -37429644 + (CAG)n Simple_repeat Simple_repeat 2 59 0 5 1224 548 225 78 28 chr12 83828122 83828264 -37429266 - B1_Mur2 SINE Alu 0 149 1 5 1224 268 261 171 17 chr12 83828272 83828389 -37429141 + MLT1I LTR MaLR 65 199 -212 5 1224 222 105 0 0 chr12 83828894 83828932 -37428598 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1224 267 224 44 15 chr12 83828932 83829000 -37428530 - ORR1D2 LTR MaLR -51 319 250 5 1224 398 330 118 22 chr12 83829221 83829543 -37427987 - L2a LINE L2 -4 3422 3070 5 1224 764 333 50 0 chr12 83829584 83829863 -37427667 + MER2 DNA MER2_type 47 339 -6 5 1224 5248 36 17 3 chr12 83830194 83830828 -37426702 + L1Md_F3 LINE L1 5916 6558 -26 5 1224 204 67 0 0 chr12 83830828 83830858 -37426672 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 1224 387 283 9 0 chr12 83831095 83831208 -37426322 - PB1D10 SINE Alu 0 117 4 5 1224 208 323 118 24 chr12 83831238 83831365 -37426165 - L2a LINE L2 -1117 2302 2164 5 1224 398 231 103 58 chr12 83831704 83831725 -37425805 - RSINE1 SINE B4 0 165 147 5 1224 216 0 0 0 chr12 83831725 83831749 -37425781 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 1224 398 231 103 58 chr12 83831749 83831883 -37425647 - RSINE1 SINE B4 -19 146 3 5 1224 28 29 0 0 chr12 83831940 83831975 -37425555 + AT_rich Low_complexity Low_complexity 1 35 0 5 1224 334 358 126 8 chr12 83832226 83832584 -37424946 - L2a LINE L2 -2028 1391 992 5 1224 622 295 83 12 chr12 83833101 83833355 -37424175 + B4A SINE B4 3 274 -18 5 1224 357 241 0 0 chr12 83833374 83833507 -37424023 + (CA)n Simple_repeat Simple_repeat 2 134 0 5 1224 635 277 126 39 chr12 83833579 83833864 -37423666 + Lx8 LINE L1 7148 7457 -16 5 1224 384 77 0 0 chr12 83834033 83834085 -37423445 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1224 213 121 0 0 chr12 83834301 83834334 -37423196 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 5 1224 225 250 0 0 chr12 83834379 83834427 -37423103 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1224 840 269 30 69 chr12 83834431 83834735 -37422795 - B4A SINE B4 0 292 1 5 1224 321 216 22 11 chr12 83835420 83835431 -37422099 - B4A SINE B4 -202 90 1 5 1224 501 128 0 0 chr12 83835431 83835509 -37422021 - B3A SINE B2 -120 78 1 5 1224 699 12 0 0 chr12 83836359 83836439 -37421091 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1224 324 321 30 30 chr12 83836589 83836753 -37420777 + MER5A1 DNA MER1_type 1 164 -2 5 1224 344 331 58 65 chr12 83836799 83837077 -37420453 - MLT1A LTR MaLR -76 298 23 5 1224 512 237 140 28 chr12 83837655 83837680 -37419850 - B3A SINE B2 0 198 176 5 1224 531 0 0 0 chr12 83837680 83837739 -37419791 + (TTTA)n Simple_repeat Simple_repeat 4 62 0 5 1224 653 199 152 0 chr12 83837739 83837891 -37419639 - B3 SINE B2 -23 175 1 5 1224 290 356 9 9 chr12 83838383 83838499 -37419031 - MER5B DNA MER1_type -60 118 3 5 1224 187 339 54 43 chr12 83838555 83838740 -37418790 + MIR SINE MIR 40 226 -36 5 1224 768 222 0 0 chr12 83840370 83840550 -37416980 + GA-rich Low_complexity Low_complexity 1 180 0 5 1224 2309 28 3 91 chr12 83840569 83840889 -37416641 - RLTR10B LTR ERVK 0 292 1 5 1224 7496 58 0 33 chr12 83840889 83841852 -37415678 - MMERVK10C-int LTR ERVK 0 7581 6651 5 1224 2833 103 7 2 chr12 83841843 83842256 -37415274 - MMERVK10C-int LTR ERVK -1771 5810 5002 5 1224 444 289 41 41 chr12 83842266 83842486 -37415044 - MMERVK10C-int LTR ERVK -6015 1566 1347 5 1224 2566 24 117 0 chr12 83842486 83842819 -37414711 - MMERVK10C-int LTR ERVK -1076 911 553 5 1224 291 136 36 72 chr12 83842819 83842930 -37414600 + CT-rich Low_complexity Low_complexity 3 109 0 5 1224 1445 62 0 0 chr12 83843008 83843186 -37414344 - MMERVK10C-int LTR ERVK -7403 178 1 5 1224 1997 18 3 122 chr12 83843186 83843505 -37414025 - RLTR10B LTR ERVK 0 292 12 5 1224 320 24 0 0 chr12 83843544 83843586 -37413944 - RLTR10B LTR ERVK -250 42 1 5 1224 462 49 0 0 chr12 83844444 83844505 -37413025 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1224 575 190 323 6 chr12 83844912 83845076 -37412454 + B3 SINE B2 1 216 0 5 1224 270 0 0 0 chr12 83846379 83846409 -37411121 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 1224 353 207 11 0 chr12 83847230 83847317 -37410213 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 1224 570 274 88 22 chr12 83847413 83847641 -37409889 + MER2 DNA MER2_type 101 343 -2 6 1224 351 213 13 13 chr12 83847782 83847858 -37409672 + RSINE1 SINE B4 4 79 -86 6 1224 186 43 0 0 chr12 83848431 83848454 -37409076 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1224 280 273 29 136 chr12 83849217 83849357 -37408173 - B1F SINE Alu -2 125 1 6 1224 675 108 0 0 chr12 83850799 83850901 -37406629 + (GA)n Simple_repeat Simple_repeat 1 102 0 6 1224 24 53 0 0 chr12 83852079 83852117 -37405413 + AT_rich Low_complexity Low_complexity 1 38 0 6 1224 495 48 0 0 chr12 83852235 83852297 -37405233 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1224 345 62 0 0 chr12 83853097 83853145 -37404385 + (CAGCC)n Simple_repeat Simple_repeat 1 48 0 6 1224 380 223 10 21 chr12 83853248 83853344 -37404186 - PB1D10 SINE Alu 0 117 23 6 1224 42 82 0 0 chr12 83853358 83853456 -37404074 + AT_rich Low_complexity Low_complexity 1 98 0 6 1224 289 327 0 41 chr12 83853502 83853674 -37403856 - L1MA6 LINE L1 -54 6246 6082 6 1224 348 276 53 68 chr12 83853713 83854007 -37403523 - L1MC3 LINE L1 -17 7978 7471 6 1224 363 282 26 60 chr12 83854013 83854130 -37403400 - B1F2 SINE Alu 0 149 37 6 1224 396 0 0 0 chr12 83854135 83854179 -37403351 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1224 2103 112 127 11 chr12 83854180 83854550 -37402980 - MTC LTR MaLR -8 413 1 6 1224 324 0 0 0 chr12 83854550 83854586 -37402944 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1224 210 128 0 0 chr12 83855011 83855050 -37402480 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 6 1224 357 82 0 0 chr12 83855053 83855102 -37402428 + (CCTG)n Simple_repeat Simple_repeat 2 50 0 6 1224 414 0 0 0 chr12 83855358 83855404 -37402126 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1224 324 120 0 0 chr12 83855973 83856023 -37401507 - HAL1-3A_ME LINE L1 -834 2024 1975 6 1224 246 176 0 0 chr12 83856024 83856075 -37401455 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1224 1002 260 28 28 chr12 83856075 83856364 -37401166 - B4 SINE B4 -1 291 3 6 1224 363 23 0 0 chr12 83856992 83857036 -37400494 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1224 262 254 42 14 chr12 83857511 83857583 -37399947 - B1F SINE Alu -57 92 19 6 1224 261 209 239 37 chr12 83859218 83859347 -37398183 - MIR SINE MIR -4 264 109 6 1224 1479 224 53 7 chr12 83859435 83859781 -37397749 + ORR1E LTR MaLR 1 347 -12 6 1224 2274 182 22 7 chr12 83860272 83860687 -37396843 + MTC LTR MaLR 1 421 0 6 1224 5517 188 48 28 chr12 83860687 83861105 -37396425 + MTC-int LTR MaLR 1 437 -821 6 1224 555 53 0 0 chr12 83861105 83861180 -37396350 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 1224 5517 188 48 28 chr12 83861180 83861995 -37395535 + MTC-int LTR MaLR 438 1257 -1 6 1224 2596 153 24 7 chr12 83861995 83862409 -37395121 + MTC LTR MaLR 1 421 0 6 1224 1279 222 67 122 chr12 83862619 83863020 -37394510 - MTE2b LTR MaLR 0 379 1 6 1224 415 289 55 92 chr12 83863027 83863244 -37394286 - B4 SINE B4 -83 209 1 6 1224 531 45 0 0 chr12 83864283 83864349 -37393181 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 6 1224 2280 147 12 67 chr12 83864449 83864793 -37392737 + ORR1B1 LTR MaLR 1 347 -47 6 1224 1033 99 14 0 chr12 83864793 83864934 -37392596 + B1_Mm SINE Alu 5 147 0 6 1224 2280 147 12 67 chr12 83864934 83864948 -37392582 + ORR1B1 LTR MaLR 348 348 -46 6 1224 239 0 32 0 chr12 83864948 83864979 -37392551 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1224 2280 147 12 67 chr12 83864979 83865036 -37392494 + ORR1B1 LTR MaLR 348 394 0 6 1224 232 312 53 11 chr12 83865606 83865700 -37391830 + MLT1B LTR MaLR 231 328 -62 6 1224 199 297 31 0 chr12 83866359 83866423 -37391107 - MIRb SINE MIR -84 184 119 6 1224 828 208 11 6 chr12 83866475 83866649 -37390881 - MTE2b LTR MaLR -3 376 202 6 1224 617 111 16 0 chr12 83866650 83866776 -37390754 + (CAGAGA)n Simple_repeat Simple_repeat 3 130 0 6 1224 977 251 14 0 chr12 83866781 83866996 -37390534 - MTE2b LTR MaLR -157 222 5 6 1224 216 0 0 0 chr12 83867118 83867142 -37390388 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1224 909 157 0 0 chr12 83867142 83867276 -37390254 - B1_Mur1 SINE Alu -13 136 3 6 1224 392 233 154 12 chr12 83868041 83868229 -37389301 - L1MA8 LINE L1 0 6291 6076 6 1224 6148 131 36 4 chr12 83868490 83869559 -37387971 + Lx2 LINE L1 4832 5925 -1072 6 1224 183 244 0 0 chr12 83869849 83869927 -37387603 + (TTG)n Simple_repeat Simple_repeat 1 78 0 6 1224 239 0 32 0 chr12 83870791 83870822 -37386708 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 6 1224 484 200 0 0 chr12 83870823 83870903 -37386627 - ID4_ SINE ID -3 80 1 6 1224 226 297 0 0 chr12 83870912 83870976 -37386554 - MER5A1 DNA MER1_type -95 71 8 6 1224 608 259 68 0 chr12 83870980 83871127 -37386403 - ID_B1 SINE B4 -53 171 15 6 1224 308 119 17 0 chr12 83871391 83871450 -37386080 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 6 1224 492 62 0 0 chr12 83872131 83872195 -37385335 + (GGA)n Simple_repeat Simple_repeat 3 66 0 6 1224 1328 67 0 6 chr12 83872195 83872376 -37385154 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1224 231 114 0 0 chr12 83872377 83872421 -37385109 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1224 1226 43 0 6 chr12 83873640 83873804 -37383726 + B2_Mm2 SINE B2 2 164 -31 6 1224 304 293 37 0 chr12 83874391 83874473 -37383057 - ID SINE ID -139 85 1 6 1224 462 61 0 0 chr12 83874661 83874727 -37382803 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1224 913 266 54 8 chr12 83874727 83874966 -37382564 - B4A SINE B4 -19 273 24 6 1224 960 118 0 53 chr12 83875412 83875564 -37381966 + B1_Mus1 SINE Alu 5 148 0 6 1224 279 93 0 0 chr12 83875592 83875635 -37381895 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 6 1224 1771 248 40 2 chr12 83876375 83876820 -37380710 + MT2A LTR ERVL 1 462 -71 6 1224 573 277 122 16 chr12 83877778 83878024 -37379506 + B4A SINE B4 2 273 -19 6 1224 292 285 24 16 chr12 83878027 83878152 -37379378 + (CATA)n Simple_repeat Simple_repeat 1 126 0 6 1224 1852 211 66 2 chr12 83878402 83878796 -37378734 + MTD LTR MaLR 1 419 0 6 1224 182 250 38 50 chr12 83879388 83879468 -37378062 - MIR SINE MIR -166 96 18 6 1224 258 342 33 0 chr12 83879582 83879702 -37377828 - MIRb SINE MIR -40 228 105 6 1224 3960 252 71 37 chr12 83879810 83880382 -37377148 + MMAR1 DNA Mariner 31 620 -666 6 1224 1234 41 0 0 chr12 83880382 83880528 -37377002 - B1_Mus2 SINE Alu -1 146 1 6 1224 3960 252 71 37 chr12 83880528 83881129 -37376401 + MMAR1 DNA Mariner 621 1248 -38 6 1224 6493 43 6 5 chr12 83881129 83881926 -37375604 + L1Md_F2 LINE L1 5783 6580 -2 6 1224 3960 252 71 37 chr12 83881926 83881960 -37375570 + MMAR1 DNA Mariner 1249 1280 -6 6 1224 270 0 0 0 chr12 83881974 83882004 -37375526 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1224 774 83 0 0 chr12 83883077 83883197 -37374333 + (GA)n Simple_repeat Simple_repeat 1 120 0 6 1224 773 191 7 0 chr12 83884121 83884257 -37373273 - B1_Mur2 SINE Alu -12 137 1 6 2 27336 62 20 0 chr12 83884500 83889532 -37367998 - L1Md_T LINE L1 0 6582 1170 6 1225 5683 153 33 40 chr12 83889538 83890647 -37366883 - L1Md_T LINE L1 -5411 1205 104 6 1225 681 291 59 40 chr12 83890681 83890937 -37366593 + B4A SINE B4 5 278 -14 6 1225 345 24 0 0 chr12 83890961 83891003 -37366527 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1225 310 158 26 26 chr12 83891112 83891190 -37366340 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 6 1225 937 279 71 8 chr12 83891190 83891457 -37366073 - B4A SINE B4 0 292 9 6 1225 198 0 0 0 chr12 83891837 83891859 -37365671 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1225 195 42 0 0 chr12 83892573 83892597 -37364933 + (CG)n Simple_repeat Simple_repeat 2 25 0 6 1225 261 0 0 0 chr12 83892597 83892625 -37364905 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1225 405 0 0 0 chr12 83892625 83892670 -37364860 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1225 629 318 75 14 chr12 83893474 83893901 -37363629 + L1ME2 LINE L1 5709 6161 -3 6 1225 24 0 0 0 chr12 83894525 83894549 -37362981 + AT_rich Low_complexity Low_complexity 1 24 0 6 1225 201 132 0 0 chr12 83895423 83895461 -37362069 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1225 303 85 0 0 chr12 83895467 83895514 -37362016 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 6 1225 5063 64 2 6 chr12 83896069 83896710 -37360820 - L1_Mus1 LINE L1 -1 6566 5929 6 1225 2338 57 0 20 chr12 83896711 83897016 -37360514 + L1_Mm LINE L1 5301 5599 -284 6 1225 673 210 274 43 chr12 83897117 83897238 -37360292 + Lx7 LINE L1 7203 7316 -380 6 1225 360 0 0 0 chr12 83897238 83897278 -37360252 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1225 673 210 274 43 chr12 83897278 83897460 -37360070 + Lx7 LINE L1 7317 7577 -119 6 1225 405 0 0 0 chr12 83897460 83897505 -37360025 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1225 673 210 274 43 chr12 83897505 83897598 -37359932 + Lx7 LINE L1 7578 7692 -4 6 1225 504 0 0 0 chr12 83897732 83897788 -37359742 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1225 666 272 25 51 chr12 83897846 83898082 -37359448 - B4A SINE B4 -48 244 15 6 1225 546 138 0 0 chr12 83898637 83898746 -37358784 + (TC)n Simple_repeat Simple_repeat 2 110 0 6 1225 703 258 159 76 chr12 83898760 83899024 -37358506 - B4A SINE B4 -2 290 5 6 1225 321 208 0 0 chr12 83899811 83899888 -37357642 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1225 1083 58 0 0 chr12 83900034 83900173 -37357357 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 6 1225 896 284 100 29 chr12 83900274 83900695 -37356835 - L1MD1 LINE L1 -37 6205 5755 6 1225 288 335 91 46 chr12 83902607 83902782 -37354748 - MER21B LTR ERV1 -565 298 116 6 1225 405 0 0 0 chr12 83904216 83904261 -37353269 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1225 649 280 70 9 chr12 83904577 83904804 -37352726 + MER2 DNA MER2_type 88 328 -17 6 1225 201 121 0 0 chr12 83905733 83905766 -37351764 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6 1225 339 25 0 0 chr12 83906082 83906122 -37351408 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 6 1225 1100 288 120 17 chr12 83906865 83907332 -37350198 - MLT2B2 LTR ERVL 0 515 1 7 1225 727 252 142 0 chr12 83907465 83907691 -37349839 - B4A SINE B4 -1 291 34 7 1225 249 108 0 0 chr12 83909530 83909567 -37347963 + (TCCCC)n Simple_repeat Simple_repeat 2 38 0 7 1225 21 71 0 0 chr12 83912838 83912880 -37344650 + AT_rich Low_complexity Low_complexity 1 42 0 7 1225 22 0 0 0 chr12 83913332 83913354 -37344176 + AT_rich Low_complexity Low_complexity 1 22 0 7 1225 975 133 14 0 chr12 83913951 83914094 -37343436 - B1_Mur4 SINE Alu -1 149 5 7 1225 4019 148 19 31 chr12 83915296 83915995 -37341535 - RLTR17 LTR ERVK 0 692 3 7 1225 426 20 0 0 chr12 83916387 83916438 -37341092 + (TATTG)n Simple_repeat Simple_repeat 5 55 0 7 1225 378 310 49 0 chr12 83916876 83917018 -37340512 - MLT1G1 LTR MaLR -70 509 361 7 1225 445 304 86 85 chr12 83917385 83917823 -37339707 - Lx7 LINE L1 -60 7413 6962 7 1225 576 0 0 0 chr12 83918040 83918104 -37339426 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1225 22 56 0 0 chr12 83918249 83918285 -37339245 + AT_rich Low_complexity Low_complexity 1 36 0 7 1225 24 0 0 0 chr12 83918578 83918602 -37338928 + AT_rich Low_complexity Low_complexity 1 24 0 7 1225 306 111 0 18 chr12 83919700 83919755 -37337775 - ORR1D1 LTR MaLR 0 374 321 7 1225 243 273 63 25 chr12 83920863 83920942 -37336588 - L3 LINE CR1 -2 4487 4406 7 1225 455 301 22 7 chr12 83921401 83921538 -37335992 - MER5B DNA MER1_type -19 159 21 7 1225 237 356 22 0 chr12 83922228 83922318 -37335212 + ID_B1 SINE B4 2 93 -131 7 1225 433 318 61 0 chr12 83922319 83922467 -37335063 + RSINE1 SINE B4 3 159 -6 7 1225 1437 232 87 3 chr12 83922567 83922913 -37334617 - MTE2a LTR MaLR -2 377 3 7 1225 556 250 100 22 chr12 83923134 83923314 -37334216 - B3A SINE B2 -3 195 2 7 1225 193 288 0 29 chr12 83923477 83923545 -37333985 - L2 LINE L2 -519 2900 2835 7 1225 630 311 51 64 chr12 83923756 83924131 -37333399 - MLT1B LTR MaLR -10 380 11 7 1225 254 290 72 8 chr12 83924463 83924588 -37332942 + MIRb SINE MIR 10 142 -126 7 1225 2325 161 10 8 chr12 83924653 83925046 -37332484 + ORR1B1 LTR MaLR 1 394 0 7 1225 565 322 60 63 chr12 83926229 83926594 -37330936 + MLT1B LTR MaLR 12 375 -15 7 1225 337 289 67 39 chr12 83927756 83927936 -37329594 - RMER15 LTR ERVL -2 573 389 7 1225 193 146 0 40 chr12 83928653 83928703 -37328827 + CT-rich Low_complexity Low_complexity 2 49 0 7 1225 216 208 0 19 chr12 83929256 83929310 -37328220 + CT-rich Low_complexity Low_complexity 2 54 0 7 1225 21 57 0 0 chr12 83929335 83929370 -37328160 + AT_rich Low_complexity Low_complexity 1 35 0 7 1225 405 0 0 0 chr12 83929425 83929470 -37328060 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1225 518 248 113 7 chr12 83929527 83929677 -37327853 - B4A SINE B4 -94 198 33 7 1225 189 163 0 0 chr12 83929708 83929757 -37327773 + A-rich Low_complexity Low_complexity 1 49 0 7 1225 705 251 106 18 chr12 83930770 83930997 -37326533 + B4A SINE B4 1 247 -45 7 1225 23 0 0 0 chr12 83932603 83932626 -37324904 + AT_rich Low_complexity Low_complexity 1 23 0 7 1225 306 257 112 19 chr12 83932724 83932831 -37324699 + PB1D10 SINE Alu 1 117 0 7 1225 236 295 35 141 chr12 83932970 83933112 -37324418 - MLT1E3 LTR MaLR -15 609 483 7 1225 416 239 177 0 chr12 83934198 83934311 -37323219 - ID_B1 SINE B4 0 224 92 7 1225 215 225 0 0 chr12 83934311 83934351 -37323179 - ID_B1 SINE B4 -104 120 81 7 1225 426 276 23 17 chr12 83934553 83934730 -37322800 + MER33 DNA MER1_type 72 249 -75 7 1225 319 263 70 10 chr12 83935522 83935622 -37321908 + MLT1J1 LTR MaLR 41 146 -298 7 1225 667 244 0 38 chr12 83935622 83935805 -37321725 - Lx6 LINE L1 -8 7452 7277 7 1225 714 256 41 30 chr12 83935875 83936072 -37321458 - RMER30 DNA MER1_type -2 200 2 7 1225 22 35 0 0 chr12 83936938 83936967 -37320563 + AT_rich Low_complexity Low_complexity 1 29 0 7 1225 209 83 28 0 chr12 83936998 83937034 -37320496 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1225 208 250 0 0 chr12 83937274 83937330 -37320200 + T-rich Low_complexity Low_complexity 1 56 0 7 1225 1167 55 7 7 chr12 83937331 83937478 -37320052 - B1_Mus2 SINE Alu 0 147 1 7 1225 1983 158 91 0 chr12 83937503 83937864 -37319666 - ORR1B1 LTR MaLR 0 394 1 7 1225 530 268 20 5 chr12 83938075 83938239 -37319291 + B3A SINE B2 48 215 -1 7 1225 286 323 32 0 chr12 83938304 83938397 -37319133 - MIRb SINE MIR -48 220 125 7 1225 309 335 49 90 chr12 83939685 83939908 -37317622 + MER20 DNA MER1_type 6 219 0 7 1225 324 0 0 0 chr12 83940563 83940599 -37316931 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1225 628 238 163 16 chr12 83941955 83942139 -37315391 - ID_B1 SINE B4 -13 211 1 7 1225 554 312 35 18 chr12 83943050 83943278 -37314252 - L1ME3 LINE L1 -269 5893 5662 7 1225 4591 56 17 10 chr12 83943592 83944170 -37313360 + L1Md_F2 LINE L1 5988 6569 -13 7 1225 346 285 77 0 chr12 83944445 83944575 -37312955 - MER2B DNA MER2_type -7 329 190 7 1225 560 241 0 0 chr12 83944610 83944722 -37312808 + B3A SINE B2 1 112 -86 7 1225 1664 144 173 33 chr12 83944785 83945115 -37312415 + ORR1C1 LTR MaLR 3 378 0 7 1225 898 207 78 5 chr12 83946355 83946573 -37310957 - MTEb LTR MaLR 0 379 146 7 1225 5816 186 165 13 chr12 83946623 83947931 -37309599 - ORR1B1-int LTR MaLR -2 1507 1 7 1225 272 275 36 27 chr12 83949187 83949299 -37308231 - Lx8 LINE L1 -374 5929 5802 7 1225 774 251 65 10 chr12 83949306 83949507 -37308023 - ID_B1 SINE B4 -11 213 2 7 1225 347 276 19 9 chr12 83950453 83950559 -37306971 + PB1D10 SINE Alu 10 116 -1 7 1225 204 108 27 0 chr12 83951516 83951553 -37305977 + L2b LINE L2 3325 3362 -13 7 1225 1696 133 22 42 chr12 83951870 83952183 -37305347 + Lx2 LINE L1 6691 6997 0 7 1225 210 37 0 0 chr12 83952749 83952776 -37304754 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1225 777 22 0 0 chr12 83953126 83953217 -37304313 + (GA)n Simple_repeat Simple_repeat 1 91 0 7 1225 1181 80 61 12 chr12 83953219 83953384 -37304146 - RMER17A-int LTR ERVK -1542 186 14 7 1225 3861 99 31 107 chr12 83953386 83954213 -37303317 - RMER17A LTR ERVK 0 751 3 7 1225 24 0 0 0 chr12 83954608 83954632 -37302898 + AT_rich Low_complexity Low_complexity 1 24 0 7 1225 237 83 0 0 chr12 83954763 83954799 -37302731 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 7 1225 207 0 0 0 chr12 83954892 83954915 -37302615 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 1225 335 227 0 0 chr12 83956277 83956343 -37301187 + MER58A DNA MER1_type 54 119 -105 7 1225 270 115 0 0 chr12 83956687 83956739 -37300791 + (A)n Simple_repeat Simple_repeat 1 52 0 7 1225 634 306 5 25 chr12 83957556 83957757 -37299773 + B3 SINE B2 5 201 -15 7 1225 296 331 74 0 chr12 83958208 83958356 -37299174 - L2 LINE L2 -1002 2417 2259 7 1225 303 307 78 78 chr12 83958856 83959036 -37298494 - ORR1E LTR MaLR -173 186 7 7 1225 574 284 79 96 chr12 83959887 83960167 -37297363 - MTEa LTR MaLR -47 332 58 7 1225 1157 164 42 28 chr12 83960166 83960379 -37297151 - URR1A DNA MER1_type -10 216 1 7 1225 259 148 36 18 chr12 83960379 83960432 -37297098 - MTEa LTR MaLR -325 54 1 7 1225 216 97 0 0 chr12 83961575 83961606 -37295924 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1225 257 267 93 0 chr12 83962022 83962097 -37295433 + MER58A DNA MER1_type 2 83 -141 7 1225 2326 207 14 68 chr12 83962606 83962739 -37294791 - Lx7 LINE L1 -1776 5920 5801 7 1225 1524 58 16 0 chr12 83962739 83962930 -37294600 - B2_Mm2 SINE B2 0 195 2 7 1225 2326 221 60 113 chr12 83962930 83963169 -37294361 - Lx7 LINE L1 -80 5800 5564 7 1225 390 91 0 0 chr12 83963169 83963224 -37294306 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 1225 2326 221 60 113 chr12 83963224 83963761 -37293769 - Lx7 LINE L1 -317 5563 5051 7 1225 4346 271 71 45 chr12 83963721 83965322 -37292208 + Lx7 LINE L1 5891 7672 -24 7 1225 504 286 21 37 chr12 83965951 83966140 -37291390 - MLT1F2 LTR MaLR -374 186 1 7 1225 679 267 140 8 chr12 83966226 83966405 -37291125 - MLT1A0 LTR MaLR 0 365 165 7 1225 771 72 0 0 chr12 83966405 83966516 -37291014 + (TC)n Simple_repeat Simple_repeat 1 111 0 7 1225 679 267 140 8 chr12 83966516 83966593 -37290937 - MLT1A0 LTR MaLR -201 164 76 7 1225 7308 96 14 19 chr12 83967712 83968917 -37288613 - Lx LINE L1 -68 6586 5385 7 1225 257 274 19 10 chr12 83969168 83969271 -37288259 + (TA)n Simple_repeat Simple_repeat 2 105 0 7 1225 29 47 0 0 chr12 83969378 83969421 -37288109 + AT_rich Low_complexity Low_complexity 1 43 0 7 1225 317 296 63 8 chr12 83970585 83970711 -37286819 + L2b LINE L2 3221 3353 -22 7 1225 606 294 74 22 chr12 83971453 83971724 -37285806 - MER2 DNA MER2_type -8 337 53 7 1225 2711 50 17 26 chr12 83971727 83972076 -37285454 + ORR1A0 LTR MaLR 1 346 0 7 1225 1317 64 0 0 chr12 83972779 83972951 -37284579 + (TTC)n Simple_repeat Simple_repeat 2 173 0 7 1225 4036 58 25 8 chr12 83972959 83973483 -37284047 - L1_Mus2 LINE L1 -1 6565 6033 7 1225 1064 110 0 0 chr12 83973729 83973875 -37283655 + B1_Mus1 SINE Alu 3 148 0 7 1225 2175 86 0 3 chr12 83974616 83974976 -37282554 - ORR1A1-int LTR MaLR -1053 739 381 7 1225 1219 48 0 0 chr12 83974976 83975123 -37282407 + B1_Mus2 SINE Alu 1 147 0 7 1225 337 264 94 0 chr12 83975413 83975519 -37282011 + MER92B LTR ERV1 97 212 -424 7 1225 1227 316 85 14 chr12 83975592 83976249 -37281281 - Lx8 LINE L1 -2 7471 6768 7 1225 288 272 78 54 chr12 83976657 83976824 -37280706 + MER92B LTR ERV1 434 604 -32 7 1225 328 315 11 0 chr12 83977151 83977240 -37280290 + PB1D10 SINE Alu 1 90 -27 7 1225 308 315 35 18 chr12 83977307 83977420 -37280110 + PB1D10 SINE Alu 2 116 -1 7 1225 207 0 0 0 chr12 83977430 83977453 -37280077 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1225 206 105 26 0 chr12 83977625 83977663 -37279867 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 8 1225 580 158 34 26 chr12 83977682 83977799 -37279731 + PB1D9 SINE Alu 1 118 -2 8 1225 386 121 0 15 chr12 83979371 83979438 -37278092 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1225 369 0 0 0 chr12 83979551 83979592 -37277938 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1225 610 249 75 15 chr12 83979592 83979792 -37277738 - B4A SINE B4 -71 221 10 8 1225 1024 49 7 14 chr12 83980734 83980879 -37276651 + L1Md_F2 LINE L1 6435 6578 -4 8 1225 2108 104 72 0 chr12 83981045 83981380 -37276150 - RLTR15 LTR ERVK 0 359 1 8 1225 228 222 0 0 chr12 83982871 83982943 -37274587 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1225 453 243 72 0 chr12 83982949 83983060 -37274470 + LSU-rRNA_Hsa rRNA rRNA 271 389 -4646 8 1225 797 344 126 19 chr12 83983499 83983929 -37273601 + MER82 DNA MER2_type 172 647 -6 8 1225 577 110 20 0 chr12 83984011 83984111 -37273419 + (TG)n Simple_repeat Simple_repeat 1 102 0 8 1225 1293 81 0 0 chr12 83984460 83984770 -37272760 + (CA)n Simple_repeat Simple_repeat 1 310 0 8 1225 414 306 63 37 chr12 83984827 83985017 -37272513 + ERVL-E-int LTR ERVL 396 590 -5077 8 1225 300 264 0 0 chr12 83985228 83985315 -37272215 + (TA)n Simple_repeat Simple_repeat 1 87 0 8 1225 180 111 0 0 chr12 83985315 83985342 -37272188 + (TGGA)n Simple_repeat Simple_repeat 3 29 0 8 1225 432 0 0 0 chr12 83985629 83985677 -37271853 + (TCC)n Simple_repeat Simple_repeat 2 49 0 8 1225 453 270 112 16 chr12 83985899 83986087 -37271443 + L1ME2z LINE L1 6096 6301 -143 8 1225 4951 63 19 8 chr12 83986178 83986814 -37270716 - L1_Mus1 LINE L1 -1 6566 5924 8 1225 3197 65 0 0 chr12 83986814 83987290 -37270240 + L1_Mus1 LINE L1 5468 5943 -623 8 1225 281 213 16 0 chr12 83987637 83987698 -37269832 - MTEb LTR MaLR -1 378 317 8 1225 573 191 12 19 chr12 83987700 83987860 -37269670 + GA-rich Low_complexity Low_complexity 2 160 0 8 1225 1389 89 18 27 chr12 83987897 83988116 -37269414 + Lx LINE L1 6426 6642 -12 8 1225 1189 221 39 0 chr12 83988205 83988459 -37269071 - MTEb LTR MaLR -115 264 1 8 1225 498 46 0 0 chr12 83988841 83988906 -37268624 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1225 687 217 253 13 chr12 83988937 83989170 -37268360 - B4A SINE B4 -2 290 2 8 1225 266 289 24 73 chr12 83989387 83989510 -37268020 - L2a LINE L2 -31 3395 3279 8 1225 334 305 11 0 chr12 83991041 83991136 -37266394 + Tigger5 DNA MER2_type 2311 2406 0 8 1225 233 186 0 0 chr12 83991814 83991857 -37265673 + B3A SINE B2 2 44 -154 8 1225 8307 46 0 12 chr12 83991866 83992956 -37264574 - L1_Mus1 LINE L1 0 6567 5491 8 1225 2679 84 0 0 chr12 83992956 83993303 -37264227 + L1_Mm LINE L1 4728 5074 -809 8 1225 455 281 9 17 chr12 83993310 83993426 -37264104 + B3A SINE B2 54 168 -30 8 1225 773 123 46 13 chr12 83995163 83995401 -37262129 + CT-rich Low_complexity Low_complexity 1 246 0 8 1225 1266 50 0 32 chr12 83995405 83995591 -37261939 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 8 1225 350 233 96 10 chr12 83995667 83995771 -37261759 - PB1D9 SINE Alu -6 114 2 8 1225 386 250 0 0 chr12 83997096 83997176 -37260354 - ID4_ SINE ID 0 83 4 8 1225 1521 247 33 3 chr12 83997790 83998156 -37259374 + MTE2b LTR MaLR 3 379 0 8 1225 324 0 0 0 chr12 83998467 83998503 -37259027 + (CATA)n Simple_repeat Simple_repeat 2 37 0 8 1225 487 272 30 60 chr12 83999026 83999194 -37258336 - RSINE1 SINE B4 0 165 3 8 1225 22 35 0 0 chr12 83999333 83999362 -37258168 + AT_rich Low_complexity Low_complexity 1 29 0 8 1225 297 167 0 0 chr12 83999378 83999432 -37258098 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1225 3292 41 23 0 chr12 83999432 83999819 -37257711 - MTA_Mm LTR MaLR 0 396 1 8 1225 1329 11 0 0 chr12 83999819 84000000 -37257530 - MTA_Mm-int LTR MaLR 0 1098 918 8 1225 6802 55 6 0 chr12 84000000 84000912 -37256618 - MTA_Mm-int LTR MaLR -181 917 1 1 1225 3175 56 15 0 chr12 84000912 84001302 -37256228 - MTA_Mm LTR MaLR 0 396 1 1 1225 948 214 114 5 chr12 84001625 84001827 -37255703 + URR1A DNA MER1_type 1 224 -2 2 1225 315 0 0 0 chr12 84001939 84001974 -37255556 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 1225 601 249 131 11 chr12 84002268 84002459 -37255071 + ID_B1 SINE B4 3 216 -8 4 1225 6234 65 94 1 chr12 84003491 84003907 -37253623 - RLTR13B1 LTR ERVK 0 893 476 5 1225 504 32 0 0 chr12 84003907 84003969 -37253561 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1225 6234 65 94 1 chr12 84003969 84004369 -37253161 - RLTR13B1 LTR ERVK -418 475 3 5 1225 285 281 43 26 chr12 84004633 84004750 -37252780 - MLT1A1 LTR MaLR -22 386 268 7 1225 216 0 0 0 chr12 84004773 84004797 -37252733 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1225 609 14 0 0 chr12 84006755 84006825 -37250705 + (GA)n Simple_repeat Simple_repeat 1 70 0 9 1225 431 155 12 0 chr12 84007125 84007209 -37250321 + CT-rich Low_complexity Low_complexity 2 86 0 1 1225 314 250 43 0 chr12 84007646 84007738 -37249792 + MER97c DNA MER1_type? 38 133 -957 1 1225 262 282 43 114 chr12 84008102 84008117 -37249413 - B2_Mm1t SINE B2 -14 179 164 1 1225 471 18 0 0 chr12 84008117 84008173 -37249357 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1225 262 282 43 114 chr12 84008173 84008341 -37249189 - B2_Mm1t SINE B2 -30 163 9 1 1225 306 0 0 0 chr12 84008950 84008984 -37248546 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1225 389 271 24 83 chr12 84009325 84009494 -37248036 + RSINE1 SINE B4 5 163 -2 1 1225 360 323 54 69 chr12 84009621 84009824 -37247706 - MER34 LTR ERV1 -326 216 17 1 1225 235 386 50 12 chr12 84009941 84010101 -37247429 + MER97c DNA MER1_type? 280 445 -645 1 1225 392 263 20 10 chr12 84010140 84010240 -37247290 - RSINE1 SINE B4 -31 134 34 1 1225 235 254 242 78 chr12 84010422 84010550 -37246980 - B3A SINE B2 -2 196 48 1 1225 316 211 26 0 chr12 84010657 84010733 -37246797 + Lx7 LINE L1 7619 7696 0 1 1225 738 227 0 0 chr12 84010880 84011021 -37246509 - RSINE1 SINE B4 -23 142 2 2 1225 603 145 24 8 chr12 84011497 84011622 -37245908 + CT-rich Low_complexity Low_complexity 2 128 0 2 1225 492 317 121 32 chr12 84011894 84012142 -37245388 + Charlie1b DNA MER1_type 1 270 -253 2 1225 22 0 0 0 chr12 84012155 84012177 -37245353 + AT_rich Low_complexity Low_complexity 1 22 0 2 1225 913 205 21 10 chr12 84012490 84012682 -37244848 - B3 SINE B2 -19 197 4 2 1225 393 95 0 0 chr12 84012895 84012958 -37244572 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1225 324 188 155 10 chr12 84013332 84013429 -37244101 + MLT1A1 LTR MaLR 23 133 -275 2 1225 394 210 0 47 chr12 84014083 84014168 -37243362 + PB1D10 SINE Alu 23 103 -14 2 1225 861 271 88 91 chr12 84014174 84014515 -37243015 + MTE2b LTR MaLR 1 340 -39 2 1225 1053 95 0 0 chr12 84014580 84014717 -37242813 - B1_Mus1 SINE Alu -11 137 1 2 1225 227 248 162 52 chr12 84015103 84015239 -37242291 + Charlie23a DNA MER1_type 49 199 -140 3 1225 186 43 0 0 chr12 84015896 84015919 -37241611 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 3 1225 307 261 144 80 chr12 84015932 84016057 -37241473 - B1_Mur1 SINE Alu 0 149 17 3 1225 251 279 16 0 chr12 84016384 84016445 -37241085 - ORR1E LTR MaLR -296 63 2 3 1225 225 0 0 0 chr12 84016634 84016659 -37240871 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 3 1225 346 253 21 21 chr12 84016755 84016848 -37240682 - MER58B DNA MER1_type 0 341 249 3 153 1046 266 95 23 chr12 84016907 84017254 -37240276 + Lx7 LINE L1 6997 7368 -328 3 1226 26 0 0 0 chr12 84017257 84017283 -37240247 + AT_rich Low_complexity Low_complexity 1 26 0 3 1226 22 0 0 0 chr12 84017433 84017455 -37240075 + AT_rich Low_complexity Low_complexity 1 22 0 3 1226 759 138 30 6 chr12 84017458 84017625 -37239905 + (TA)n Simple_repeat Simple_repeat 1 171 0 3 1226 421 291 39 0 chr12 84017736 84017863 -37239667 + MLT1I LTR MaLR 280 411 0 4 1226 252 77 0 0 chr12 84018063 84018102 -37239428 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1226 1206 48 14 0 chr12 84018104 84018249 -37239281 - B1_Mm SINE Alu 0 147 1 4 1226 243 0 0 0 chr12 84018280 84018307 -37239223 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1226 391 311 25 0 chr12 84018515 84018637 -37238893 - B1F SINE Alu -23 126 2 4 1226 270 0 0 0 chr12 84018709 84018739 -37238791 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4 1226 271 228 130 0 chr12 84019013 84019105 -37238425 - LTR48 LTR ERV1 -3 784 681 4 1226 448 303 112 22 chr12 84019181 84019404 -37238126 - LTR29 LTR ERV1 -240 382 140 4 1226 228 232 59 35 chr12 84019661 84019746 -37237784 - MLT1A0 LTR MaLR -4 361 275 4 1226 202 194 32 0 chr12 84020064 84020126 -37237404 + GA-rich Low_complexity Low_complexity 5 68 0 4 1226 347 248 183 35 chr12 84021828 84021970 -37235560 - B4 SINE B4 -17 275 113 5 1226 274 304 0 56 chr12 84022649 84022757 -37234773 + MER102c DNA MER1_type 180 281 -50 5 1226 297 248 64 45 chr12 84023281 84023391 -37234139 - B1F SINE Alu 0 149 38 5 1226 423 233 29 10 chr12 84023607 84023711 -37233819 + B3A SINE B2 1 106 -92 5 1226 417 70 0 0 chr12 84023711 84023768 -37233762 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1226 272 48 24 0 chr12 84024391 84024433 -37233097 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1226 298 273 108 9 chr12 84025400 84025511 -37232019 + MLT1A0 LTR MaLR 244 365 0 5 1226 342 335 53 41 chr12 84025534 84025780 -37231750 - MER46C DNA MER2_type -10 328 80 5 1226 257 186 27 54 chr12 84026008 84026082 -37231448 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 5 1226 274 317 83 72 chr12 84026741 84026921 -37230609 + LTR82B Low_complexity ERVL 290 471 -359 5 1226 702 311 82 25 chr12 84027506 84027786 -37229744 - MLT1H1 LTR MaLR -33 522 227 6 1226 277 317 60 30 chr12 84027983 84028149 -37229381 + MLT1A1 LTR MaLR 1 171 -237 6 1226 284 231 39 0 chr12 84028198 84028276 -37229254 + MLT1A1 LTR MaLR 316 396 -12 6 1226 659 293 96 0 chr12 84028670 84028909 -37228621 + MER58B DNA MER1_type 62 323 -18 6 1226 263 199 87 120 chr12 84029032 84029215 -37228315 + RMER1C Other Other 444 620 -722 6 1226 450 284 64 0 chr12 84029618 84029727 -37227803 - RSINE1 SINE B4 -47 118 3 6 1226 203 159 45 0 chr12 84029817 84029861 -37227669 + T-rich Low_complexity Low_complexity 2 47 0 6 1226 297 193 40 14 chr12 84030213 84030294 -37227236 + MLT1A1 LTR MaLR 1 82 -283 6 1226 188 320 121 51 chr12 84030717 84030974 -37226556 + L2b LINE L2 2484 2758 -661 6 1226 238 344 65 8 chr12 84031344 84031467 -37226063 + L2b LINE L2 3226 3355 -20 6 1226 539 280 81 48 chr12 84032591 84032801 -37224729 + ID_B1 SINE B4 1 217 -7 6 1226 352 345 6 6 chr12 84033029 84033260 -37224270 + (CA)n Simple_repeat Simple_repeat 1 231 0 6 1226 238 262 18 0 chr12 84033287 84033451 -37224079 + (CATA)n Simple_repeat Simple_repeat 2 168 0 7 1226 227 274 51 64 chr12 84034529 84034607 -37222923 - ID SINE ID -142 82 6 7 1226 272 261 46 0 chr12 84034543 84034608 -37222922 - BC1_Mm scRNA scRNA -80 72 5 7 1226 545 308 91 43 chr12 84034854 84035227 -37222303 - MLT1D LTR MaLR -43 462 72 7 1226 257 294 189 10 chr12 84037225 84037421 -37220109 + MLT1D LTR MaLR 270 500 -5 7 1226 204 86 57 0 chr12 84037681 84037716 -37219814 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 7 1226 393 318 147 37 chr12 84038040 84038340 -37219190 + MLT1E3 LTR MaLR 155 487 -137 7 1226 1195 155 5 0 chr12 84038666 84038860 -37218670 + URR1A DNA MER1_type 32 226 0 7 1226 3912 73 6 35 chr12 84039234 84039771 -37217759 + L1_Mus2 LINE L1 6046 6566 0 7 1226 417 308 128 36 chr12 84039919 84040256 -37217274 - MLT1A LTR MaLR -6 368 1 7 1226 256 325 0 49 chr12 84040339 84040420 -37217110 - MLT2F LTR ERVL -319 344 268 8 1226 1179 68 0 0 chr12 84040458 84040605 -37216925 + B1_Mm SINE Alu 1 147 0 8 1226 334 307 39 19 chr12 84040921 84041077 -37216453 - L2a LINE L2 -3 3423 3265 8 1226 741 320 112 11 chr12 84041684 84042178 -37215352 - L1MB1 LINE L1 -130 6041 5493 8 1226 207 0 0 0 chr12 84042187 84042210 -37215320 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 1226 3207 266 110 32 chr12 84042484 84043887 -37213643 - L1MB1 LINE L1 -1097 5043 3532 8 1226 1180 56 0 0 chr12 84046290 84046432 -37211098 + B1_Mus1 SINE Alu 1 142 -6 8 1226 267 103 0 0 chr12 84046434 84046473 -37211057 + (GGA)n Simple_repeat Simple_repeat 3 41 0 8 1226 954 106 0 0 chr12 84046473 84046614 -37210916 + (GAAA)n Simple_repeat Simple_repeat 4 144 0 8 1226 531 138 0 0 chr12 84047456 84047543 -37209987 + (GGA)n Simple_repeat Simple_repeat 3 89 0 8 1226 727 284 175 54 chr12 84048029 84048491 -37209039 - MLT2B4 LTR ERVL -37 519 2 8 1226 408 302 86 100 chr12 84048966 84049327 -37208203 + ORR1E LTR MaLR 1 356 -3 9 1226 599 277 187 23 chr12 84050122 84050565 -37206965 - L1ME2 LINE L1 -8 6156 5641 9 1226 198 224 0 0 chr12 84050599 84050648 -37206882 + (TA)n Simple_repeat Simple_repeat 2 50 0 9 1226 301 293 130 66 chr12 84050768 84051282 -37206248 - L1ME2 LINE L1 -730 5434 4889 9 1226 292 306 67 93 chr12 84051410 84051733 -37205797 - L1ME2 LINE L1 -1490 4656 4343 9 1226 372 350 96 35 chr12 84051952 84052295 -37205235 - L1ME2 LINE L1 -2187 3959 3596 9 1226 6369 172 37 37 chr12 84052317 84053573 -37203957 - Lx5 LINE L1 -83 6967 5711 9 1226 236 310 69 10 chr12 84053570 84053772 -37203758 - L1M5 LINE L1 -2532 3614 3401 9 1226 567 271 63 28 chr12 84053909 84054163 -37203367 - L1MB8 LINE L1 -73 6105 5843 9 1226 410 295 101 34 chr12 84054164 84054343 -37203187 - L1M5 LINE L1 -459 5703 5513 9 1226 402 21 0 0 chr12 84054346 84054393 -37203137 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1226 517 249 74 35 chr12 84054484 84054713 -37202817 - L1ME2 LINE L1 -2821 3325 3088 9 1226 248 312 72 36 chr12 84055547 84055713 -37201817 - L1M5 LINE L1 -539 5585 5414 9 1226 198 219 47 0 chr12 84056807 84056871 -37200659 + L2b LINE L2 3090 3156 -219 9 1226 430 224 27 134 chr12 84056882 84057052 -37200478 - ID_B1 SINE B4 -4 220 50 1 1226 235 319 76 17 chr12 84057916 84058034 -37199496 + B2_Mm2 SINE B2 1 125 -70 1 1226 300 27 0 0 chr12 84058048 84058085 -37199445 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1226 185 119 24 0 chr12 84058095 84058137 -37199393 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1226 256 264 42 0 chr12 84058167 84058239 -37199291 - Lx8 LINE L1 -1571 5902 5828 1 1226 258 32 0 0 chr12 84058318 84058349 -37199181 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1226 414 0 0 0 chr12 84059924 84059970 -37197560 + (CTG)n Simple_repeat Simple_repeat 1 46 0 1 1226 1399 87 95 19 chr12 84060170 84060380 -37197150 - URR1A DNA MER1_type 0 226 1 1 1226 22 0 0 0 chr12 84060839 84060861 -37196669 + AT_rich Low_complexity Low_complexity 1 22 0 1 1226 814 150 347 0 chr12 84061538 84061705 -37195825 - URR1A DNA MER1_type 0 226 2 1 1226 267 285 52 7 chr12 84062979 84063101 -37194429 - MLT1J LTR MaLR -192 418 212 1 1226 201 39 0 0 chr12 84063946 84063972 -37193558 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1226 675 290 50 39 chr12 84064919 84065199 -37192331 - B4A SINE B4 -7 285 3 1 1226 291 296 86 9 chr12 84065392 84065508 -37192022 + MIRc SINE MIR 46 170 -98 1 1226 6978 51 1 30 chr12 84065743 84066633 -37190897 - L1_Mus1 LINE L1 0 6567 5704 1 1226 838 157 431 0 chr12 84066764 84066974 -37190556 + ORR1C1 LTR MaLR 1 301 -77 1 1226 1744 128 108 14 chr12 84066974 84067324 -37190206 - ORR1B1 LTR MaLR 0 394 1 1 1226 280 94 208 0 chr12 84067324 84067377 -37190153 - ORR1B1-int LTR MaLR 0 1370 1307 1 1226 6610 159 31 14 chr12 84067385 84068721 -37188809 - ORR1B1-int LTR MaLR -150 1359 2 1 1226 1885 137 170 15 chr12 84068722 84069063 -37188467 - ORR1B1 LTR MaLR 0 394 1 1 1226 511 145 0 0 chr12 84069063 84069146 -37188384 + ORR1C1 LTR MaLR 285 367 0 1 1226 243 132 0 0 chr12 84069164 84069202 -37188328 - ORR1D2 LTR MaLR -7 363 326 1 1226 617 275 83 24 chr12 84069208 84069234 -37188296 - MT2A LTR ERVL 0 601 577 1 1226 504 0 0 0 chr12 84069234 84069290 -37188240 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1226 664 254 40 23 chr12 84069290 84069487 -37188043 - MT2A LTR ERVL -25 576 285 1 1226 319 263 83 31 chr12 84069543 84069686 -37187844 - MLT1A1 LTR MaLR -7 401 210 1 1226 861 103 0 0 chr12 84069725 84069851 -37187679 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 1 1226 395 206 79 41 chr12 84069944 84070069 -37187461 - MLT1A1 LTR MaLR -227 147 1 1 1226 286 280 27 0 chr12 84070848 84070923 -37186607 - B3A SINE B2 -121 77 1 1 1226 480 225 131 48 chr12 84071169 84071337 -37186193 - B4A SINE B4 -3 289 108 1 1226 704 130 0 7 chr12 84072025 84072164 -37185366 + (GA)n Simple_repeat Simple_repeat 2 139 0 1 1226 495 0 0 0 chr12 84073316 84073371 -37184159 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1226 417 141 0 0 chr12 84074428 84074499 -37183031 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1226 251 282 144 8 chr12 84074950 84075068 -37182462 - MLT1A1 LTR MaLR -241 167 34 1 1226 454 329 62 66 chr12 84075101 84075179 -37182351 - MLT1B LTR MaLR -132 258 178 1 1226 1216 54 0 0 chr12 84075179 84075326 -37182204 - B1_Mm SINE Alu 0 147 1 1 1226 454 329 62 66 chr12 84075326 84075504 -37182026 - MLT1B LTR MaLR -213 177 3 1 1226 309 253 0 33 chr12 84076584 84076674 -37180856 - MLT1A1 LTR MaLR -4 404 318 1 1226 924 159 6 6 chr12 84076886 84077050 -37180480 + URR1A DNA MER1_type 1 164 -62 1 1226 4343 147 122 18 chr12 84077441 84078264 -37179266 - RMER13B LTR ERVK 0 908 1 1 1226 500 282 138 63 chr12 84078962 84079399 -37178131 - MLT1D LTR MaLR -37 468 1 1 1226 252 0 0 0 chr12 84079874 84079902 -37177628 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1226 437 0 19 0 chr12 84081296 84081349 -37176181 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1226 388 321 51 102 chr12 84081422 84081717 -37175813 - B4 SINE B4 -11 281 2 1 1226 207 0 0 0 chr12 84081835 84081858 -37175672 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1226 200 309 0 0 chr12 84083251 84083306 -37174224 + MIRc SINE MIR 42 96 -172 1 1226 368 261 43 0 chr12 84084173 84084265 -37173265 - B1F SINE Alu -52 97 2 1 1226 330 67 0 0 chr12 84084891 84084936 -37172594 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 1 1226 451 298 10 0 chr12 84086736 84086840 -37170690 - PB1D10 SINE Alu -12 105 1 1 1226 689 285 5 40 chr12 84087030 84087231 -37170299 - B3A SINE B2 -4 194 1 1 1226 255 278 29 17 chr12 84087575 84087703 -37169827 + L1MD LINE L1 5465 5593 -2192 1 1226 438 274 70 31 chr12 84087754 84087882 -37169648 - ID_B1 SINE B4 -7 217 85 1 1226 358 265 67 50 chr12 84089379 84089558 -37167972 - L3 LINE CR1 -107 4382 4201 1 1226 369 0 0 0 chr12 84091395 84091436 -37166094 + (TAA)n Simple_repeat Simple_repeat 1 41 0 1 1226 249 33 0 0 chr12 84092347 84092377 -37165153 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1 1226 453 90 0 0 chr12 84092377 84092444 -37165086 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1226 294 312 103 78 chr12 84092464 84092735 -37164795 - B4 SINE B4 -14 278 1 1 1226 338 214 69 35 chr12 84093029 84093116 -37164414 - 5S rRNA rRNA -25 96 7 1 1226 243 281 11 11 chr12 84093148 84093238 -37164292 + L1M4b LINE L1 1605 1694 -5640 1 1226 1197 48 0 13 chr12 84093607 84093756 -37163774 + B1_Mus1 SINE Alu 1 147 -1 1 1226 815 256 14 117 chr12 84094157 84094524 -37163006 + RLTR11B LTR ERVK 1 329 -124 1 1226 252 269 25 42 chr12 84094501 84094621 -37162909 + RLTR11B LTR ERVK 258 375 -78 1 1226 336 332 66 14 chr12 84094691 84095027 -37162503 + L1M4b LINE L1 6008 6357 -743 1 1226 241 159 16 16 chr12 84095890 84095954 -37161576 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1226 1291 203 165 102 chr12 84095954 84096414 -37161116 - MT2A LTR ERVL -44 489 1 1 1226 324 280 7 74 chr12 84097403 84097538 -37159992 + MIR SINE MIR 72 197 -65 1 1226 938 226 51 7 chr12 84097539 84097826 -37159704 + MTE2b LTR MaLR 6 347 -12 1 1226 3383 33 5 2 chr12 84099123 84099518 -37158012 - MTA_Mm LTR MaLR 0 396 1 1 1226 573 270 27 89 chr12 84100938 84101129 -37156401 + ORR1E LTR MaLR 8 186 -184 1 1226 317 128 0 71 chr12 84101129 84101213 -37156317 + (TCTCTG)n Simple_repeat Simple_repeat 4 81 0 1 1226 433 269 24 97 chr12 84101213 84101419 -37156111 + ORR1E LTR MaLR 159 373 -6 1 1226 317 263 10 31 chr12 84101667 84101765 -37155765 + G-rich Low_complexity Low_complexity 1 96 0 1 1226 883 152 17 0 chr12 84101769 84101946 -37155584 + GA-rich Low_complexity Low_complexity 1 180 0 1 1226 290 306 148 11 chr12 84102433 84102710 -37154820 - MLT2F LTR ERVL -139 524 210 1 1226 232 330 27 18 chr12 84102728 84102839 -37154691 - MLT2F LTR ERVL -533 130 19 1 1226 24 77 0 0 chr12 84103946 84103998 -37153532 + AT_rich Low_complexity Low_complexity 1 52 0 1 1226 530 254 8 0 chr12 84104096 84104214 -37153316 + RSINE1 SINE B4 6 124 -41 1 1226 189 0 0 0 chr12 84104214 84104235 -37153295 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1226 31 0 0 0 chr12 84104240 84104271 -37153259 + AT_rich Low_complexity Low_complexity 1 31 0 1 1226 243 296 14 0 chr12 84104525 84104596 -37152934 + GA-rich Low_complexity Low_complexity 5 76 0 1 1226 191 204 19 0 chr12 84105755 84105809 -37151721 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1226 376 244 207 16 chr12 84105842 84105963 -37151567 - RSINE1 SINE B4 -19 146 3 1 1226 331 296 61 20 chr12 84106067 84106200 -37151330 + PB1D10 SINE Alu 6 142 -7 1 1226 365 246 65 16 chr12 84106749 84106873 -37150657 - LTR33 LTR ERVL 0 515 386 1 1226 2456 89 3 87 chr12 84106969 84107361 -37150169 - RLTR10D LTR ERVK 0 359 1 1 1226 3617 177 37 34 chr12 84108010 84108772 -37148758 - L1_Mur3 LINE L1 -688 5192 4429 1 1226 1987 216 41 5 chr12 84108756 84109174 -37148356 - Lx7 LINE L1 -1199 6497 6065 1 1226 1185 183 46 75 chr12 84109173 84109480 -37148050 + Lx7 LINE L1 5750 6047 -1649 1 1226 513 32 0 0 chr12 84109605 84109668 -37147862 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1226 2199 70 10 0 chr12 84110958 84111259 -37146271 + ORR1A2 LTR MaLR 1 304 -23 1 1226 611 330 23 14 chr12 84111652 84111867 -37145663 + B4A SINE B4 1 217 -75 1 1226 1022 272 109 3 chr12 84112482 84112795 -37144735 - MTE2a LTR MaLR 0 379 34 1 1226 868 254 26 0 chr12 84112747 84112936 -37144594 + B3 SINE B2 11 204 -12 1 1226 1153 51 0 0 chr12 84112952 84113089 -37144441 + B1_Mm SINE Alu 2 138 -9 1 1226 708 98 0 0 chr12 84113089 84113191 -37144339 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 1 1226 266 187 12 210 chr12 84113318 84113399 -37144131 - RSINE1 SINE B4 -99 66 2 1 1226 198 0 0 0 chr12 84113453 84113475 -37144055 + (TTAG)n Simple_repeat Simple_repeat 4 25 0 1 1226 584 234 142 11 chr12 84113564 84113754 -37143776 + B3 SINE B2 1 215 -1 1 1226 312 27 0 0 chr12 84113851 84113888 -37143642 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1226 263 246 101 0 chr12 84113893 84113962 -37143568 + RMER30 DNA MER1_type 122 197 -5 1 1226 210 71 0 0 chr12 84114596 84114624 -37142906 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1226 412 276 79 31 chr12 84114975 84115102 -37142428 + RSINE1 SINE B4 4 136 -29 1 1226 224 139 23 0 chr12 84115301 84115344 -37142186 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1226 374 274 206 7 chr12 84115658 84115794 -37141736 - RSINE1 SINE B4 0 165 3 1 1226 318 95 0 0 chr12 84115836 84115878 -37141652 + (GGAGAA)n Simple_repeat Simple_repeat 5 46 0 1 1226 455 87 0 14 chr12 84115879 84115949 -37141581 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 1 1226 473 222 202 35 chr12 84115971 84116144 -37141386 - B3 SINE B2 -14 202 1 1 1226 357 252 25 71 chr12 84116907 84117029 -37140501 - MER57C2 LTR ERV1 0 434 318 1 1226 213 362 0 0 chr12 84119608 84119677 -37137853 + (CATG)n Simple_repeat Simple_repeat 3 71 0 1 1226 1068 297 23 34 chr12 84119689 84119954 -37137576 - B4A SINE B4 -30 262 1 1 1226 669 273 73 91 chr12 84120242 84120586 -37136944 + ORR1E LTR MaLR 1 353 -17 1 1226 192 233 0 0 chr12 84120719 84120762 -37136768 + MIRb SINE MIR 123 165 -103 1 1226 537 44 0 0 chr12 84121049 84121117 -37136413 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 2 1226 415 131 48 0 chr12 84121418 84121502 -37136028 + G-rich Low_complexity Low_complexity 4 91 0 2 1226 231 289 86 17 chr12 84121502 84121618 -37135912 + MLT1C LTR MaLR 298 421 -46 2 1226 1320 94 10 20 chr12 84123071 84123266 -37134264 - B2_Mm2 SINE B2 -2 193 1 2 1226 197 33 33 0 chr12 84123266 84123296 -37134234 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 2 1226 1048 39 0 0 chr12 84123299 84123426 -37134104 - B1_Mm SINE Alu 0 147 21 2 1226 1581 265 125 30 chr12 84123429 84124051 -37133479 - Lx9 LINE L1 -1 7643 6963 2 1226 263 370 42 8 chr12 84124416 84124536 -37132994 - ORR1E LTR MaLR -224 135 12 2 1226 1124 255 60 0 chr12 84125147 84125398 -37132132 + MTE2b LTR MaLR 1 266 -113 2 1226 991 190 10 14 chr12 84125388 84125591 -37131939 + MTE2b LTR MaLR 178 370 0 2 1226 227 381 0 12 chr12 84125671 84125756 -37131774 - MIRc SINE MIR -132 136 53 2 1226 671 257 14 28 chr12 84125812 84125956 -37131574 + RSINE1 SINE B4 12 153 -12 2 1226 236 368 103 54 chr12 84125956 84125996 -37131534 + B3 SINE B2 11 203 -13 2 1226 25 0 0 0 chr12 84126004 84126029 -37131501 + AT_rich Low_complexity Low_complexity 1 25 0 2 1226 285 312 43 60 chr12 84126128 84126210 -37131320 - MIRb SINE MIR -97 171 89 2 1226 2561 109 39 11 chr12 84126210 84126591 -37130939 - ORR1B1 LTR MaLR 0 394 3 2 1226 285 300 51 60 chr12 84126591 84126639 -37130891 - MIRb SINE MIR -180 88 34 2 1226 311 320 62 60 chr12 84126790 84127082 -37130448 + MLT1G LTR MaLR 1 288 -260 2 1226 315 0 0 0 chr12 84129170 84129205 -37128325 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1226 335 297 42 8 chr12 84129510 84129629 -37127901 - MLT1A LTR MaLR -218 156 34 2 1226 453 243 38 50 chr12 84130045 84130059 -37127471 - CYRA11_Mm Unknown Y-chromosome -300 317 241 2 1226 996 67 8 0 chr12 84130059 84130193 -37127337 + URR1B DNA MER1_type 91 225 0 2 1226 453 243 38 50 chr12 84130193 84130205 -37127325 - CYRA11_Mm Unknown Y-chromosome -300 240 160 2 1226 429 363 48 22 chr12 84130772 84131000 -37126530 + MIR SINE MIR 23 256 -6 2 1226 345 82 0 0 chr12 84131380 84131429 -37126101 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1226 789 298 99 14 chr12 84131429 84131650 -37125880 - B4 SINE B4 -50 242 3 2 1226 23 33 0 0 chr12 84131654 84131684 -37125846 + AT_rich Low_complexity Low_complexity 1 30 0 2 1226 309 212 150 0 chr12 84132284 84132364 -37125166 - MLT1D LTR MaLR -8 497 406 2 1226 388 316 118 61 chr12 84132371 84132600 -37124930 - MLT1D LTR MaLR -263 242 1 2 1226 213 121 0 0 chr12 84132700 84132733 -37124797 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 2 1226 367 221 101 101 chr12 84132747 84132954 -37124576 + MLT1J LTR MaLR 300 506 -6 2 1226 286 333 32 21 chr12 84132958 84133053 -37124477 + L4 LINE RTE 191 286 -1743 2 1226 1295 34 0 0 chr12 84133089 84133237 -37124293 + B1_Mus1 SINE Alu 1 148 0 2 1226 273 234 0 0 chr12 84133239 84133303 -37124227 + A-rich Low_complexity Low_complexity 1 64 0 2 1226 205 406 9 9 chr12 84133404 84133511 -37124019 + L4 LINE RTE 473 579 -1450 2 1226 219 299 50 70 chr12 84134752 84134993 -37122537 + L2 LINE L2 2253 2488 -931 2 1226 240 219 0 30 chr12 84136534 84136600 -37120930 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1226 2044 221 85 38 chr12 84136983 84137534 -37119996 - RCHARR1 DNA MER1_type -397 577 1 2 1226 294 233 41 0 chr12 84137740 84137813 -37119717 - PB1 SINE Alu -3 124 49 2 1226 361 235 22 0 chr12 84140262 84140398 -37117132 + CT-rich Low_complexity Low_complexity 4 142 0 2 1226 785 324 69 16 chr12 84140648 84141035 -37116495 + MLT1C LTR MaLR 51 467 0 2 1226 193 338 90 18 chr12 84141139 84141362 -37116168 - L2b LINE L2 -194 3181 2943 2 1226 1101 189 11 5 chr12 84141490 84141681 -37115849 + B3 SINE B2 2 193 -23 2 1226 850 168 0 21 chr12 84141706 84141846 -37115684 + B1_Mur4 SINE Alu 6 142 -8 2 1226 201 175 0 0 chr12 84141846 84141886 -37115644 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1226 272 306 80 46 chr12 84141886 84142037 -37115493 - RMER12 LTR ERVK -466 856 701 2 1226 629 192 247 11 chr12 84142884 84143058 -37114472 + ID_B1 SINE B4 5 219 -5 2 1226 360 0 0 0 chr12 84143180 84143220 -37114310 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1226 716 204 37 29 chr12 84143220 84143356 -37114174 - B1_Mus2 SINE Alu -9 138 2 2 1226 3157 73 2 0 chr12 84143608 84144007 -37113523 + MTB LTR MaLR 1 400 0 2 1226 187 111 83 0 chr12 84144041 84144077 -37113453 + L2a LINE L2 3388 3426 0 2 1226 825 274 66 0 chr12 84144316 84144471 -37113059 + B4A SINE B4 1 160 -132 2 1226 189 0 0 0 chr12 84144471 84144492 -37113038 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 2 1226 825 284 65 8 chr12 84144492 84144558 -37112972 + B4A SINE B4 161 230 -62 2 1226 713 113 0 0 chr12 84144538 84144635 -37112895 + B1_Mus2 SINE Alu 38 134 -13 2 1226 291 71 0 0 chr12 84144635 84144677 -37112853 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 2 1226 513 0 0 0 chr12 84146507 84146564 -37110966 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1226 235 302 84 28 chr12 84147637 84147780 -37109750 - MLT1J1 LTR MaLR -260 184 34 2 1226 227 204 20 0 chr12 84148106 84148155 -37109375 + CT-rich Low_complexity Low_complexity 3 52 0 2 153 487 254 285 17 chr12 84148174 84148346 -37109184 + ID_B1 SINE B4 7 224 0 2 1227 333 176 57 29 chr12 84149403 84149473 -37108057 - ID2 SINE ID -10 73 2 2 1227 732 123 0 0 chr12 84150538 84150652 -37106878 + (TTGG)n Simple_repeat Simple_repeat 2 115 0 2 1227 505 237 0 0 chr12 84150653 84150750 -37106780 - PB1D10 SINE Alu -20 97 1 2 1227 769 286 106 56 chr12 84150771 84151093 -37106437 + MER2 DNA MER2_type 6 343 -2 2 1227 1206 133 14 42 chr12 84151954 84152166 -37105364 - URR1B DNA MER1_type -19 206 1 2 1227 804 304 68 11 chr12 84152571 84152834 -37104696 - MLT1A0 LTR MaLR 0 365 88 2 1227 931 208 62 0 chr12 84152834 84153012 -37104518 - B3 SINE B2 -27 189 1 2 1227 1915 148 65 6 chr12 84153996 84154335 -37103195 + RLTR15 LTR ERVK 1 359 0 2 1227 664 242 45 94 chr12 84154712 84154935 -37102595 - B3 SINE B2 0 216 5 2 1227 459 48 0 0 chr12 84155373 84155435 -37102095 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1227 461 257 407 8 chr12 84156466 84156729 -37100801 - MTEa LTR MaLR 0 379 12 2 1227 229 400 0 9 chr12 84156821 84156932 -37100598 + MIR SINE MIR 129 238 -24 2 1227 207 0 0 0 chr12 84157193 84157216 -37100314 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2 1227 477 281 41 75 chr12 84157365 84157657 -37099873 - B4A SINE B4 -10 282 1 2 1227 1305 69 6 17 chr12 84157952 84157966 -37099564 - B2_Mm2 SINE B2 -19 176 164 2 1227 216 0 0 0 chr12 84157966 84157990 -37099540 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1227 1305 69 6 17 chr12 84157990 84158152 -37099378 - B2_Mm2 SINE B2 -32 163 2 2 1227 1210 133 71 5 chr12 84158157 84158368 -37099162 + URR1B DNA MER1_type 1 225 0 2 1227 237 350 97 19 chr12 84158501 84158693 -37098837 - Tigger13a DNA MER2_type -297 474 267 2 1227 282 269 114 9 chr12 84158693 84158798 -37098732 - Tigger5 DNA MER2_type 0 2406 2291 2 1227 364 336 7 28 chr12 84158850 84158994 -37098536 - Tigger5 DNA MER2_type -2241 165 25 2 1227 372 150 0 0 chr12 84159007 84159087 -37098443 + (TG)n Simple_repeat Simple_repeat 2 81 0 2 1227 302 123 18 0 chr12 84159215 84159272 -37098258 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 2 1227 395 255 169 21 chr12 84159775 84160011 -37097519 + B4 SINE B4 4 274 -18 2 1227 2178 176 55 15 chr12 84160252 84160649 -37096881 - MTC LTR MaLR 0 421 9 2 1227 421 271 36 43 chr12 84161016 84161155 -37096375 + B1F1 SINE Alu 1 138 -11 2 1227 964 308 122 19 chr12 84161163 84161795 -37095735 + L1ME1 LINE L1 5281 5977 -202 2 1227 280 111 18 18 chr12 84163281 84163336 -37094194 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1227 232 91 45 0 chr12 84163821 84163865 -37093665 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1227 546 258 61 29 chr12 84164854 84165121 -37092409 - ORR1E LTR MaLR -43 336 35 2 1227 1264 338 81 9 chr12 84167381 84167952 -37089578 + MER82 DNA MER2_type 18 629 -24 2 1227 314 151 14 0 chr12 84169567 84169640 -37087890 + GA-rich Low_complexity Low_complexity 1 74 0 2 1227 348 316 12 94 chr12 84170085 84170256 -37087274 - MER5A1 DNA MER1_type -6 160 4 2 1227 277 271 14 30 chr12 84172724 84172830 -37084700 - B1F SINE Alu -2 147 45 2 1227 203 136 0 43 chr12 84172916 84172962 -37084568 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 2 1227 717 275 16 52 chr12 84172967 84173159 -37084371 - B3A SINE B2 -2 196 12 2 1227 631 267 35 70 chr12 84173184 84173385 -37084145 - MER20 DNA MER1_type -22 197 4 2 1227 192 301 44 88 chr12 84173911 84174024 -37083506 + MIRc SINE MIR 31 138 -130 2 1227 231 292 146 49 chr12 84175416 84175560 -37081970 - Tigger15a DNA TcMar -50 665 508 2 1227 1182 55 7 7 chr12 84175599 84175746 -37081784 + B1_Mm SINE Alu 1 147 0 2 1227 449 34 0 17 chr12 84175748 84175808 -37081722 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 2 1227 245 217 23 57 chr12 84175853 84175941 -37081589 - Tigger15a DNA TcMar -298 417 333 2 1227 369 131 0 0 chr12 84175941 84176002 -37081528 + (TTTC)n Simple_repeat Simple_repeat 4 64 0 2 1227 186 118 0 0 chr12 84176036 84176070 -37081460 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1227 603 157 39 0 chr12 84176073 84176175 -37081355 - B1_Mus2 SINE Alu -2 145 40 2 1227 255 61 0 0 chr12 84176175 84176208 -37081322 + (CCCCCG)n Simple_repeat Simple_repeat 2 34 0 2 1227 215 146 24 0 chr12 84176391 84176432 -37081098 + C-rich Low_complexity Low_complexity 1 42 0 2 1227 297 244 103 0 chr12 84176495 84176573 -37080957 - Tigger7 DNA MER2_type -155 2336 2251 2 1227 1259 266 86 15 chr12 84176596 84176935 -37080595 - Tigger7 DNA MER2_type -2098 393 31 2 1227 473 383 13 70 chr12 84177001 84177231 -37080299 - MLT1H LTR MaLR -127 422 206 3 1227 1326 109 119 0 chr12 84177337 84177539 -37079991 + URR1A DNA MER1_type 1 226 0 3 1227 283 235 23 69 chr12 84177645 84177732 -37079798 - MTEb LTR MaLR 0 379 297 3 1227 276 170 0 0 chr12 84177851 84177904 -37079626 + G-rich Low_complexity Low_complexity 1 53 0 3 1227 921 19 0 0 chr12 84177922 84178029 -37079501 + (GGAGA)n Simple_repeat Simple_repeat 3 109 0 3 1227 991 248 0 65 chr12 84179816 84180045 -37077485 + ID_B1 SINE B4 10 223 -1 3 1227 288 77 0 0 chr12 84181934 84181973 -37075557 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1227 1154 325 46 42 chr12 84182033 84182534 -37074996 + MLT1D LTR MaLR 3 505 0 3 1227 464 0 18 0 chr12 84183664 84183720 -37073810 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 3 1227 283 319 17 22 chr12 84183942 84184061 -37073469 + MLT1D LTR MaLR 1 108 -359 3 1227 576 204 192 36 chr12 84184061 84184254 -37073276 + Lx8 LINE L1 7247 7469 -4 3 1227 183 184 0 0 chr12 84184335 84184373 -37073157 + GA-rich Low_complexity Low_complexity 3 40 0 3 1227 450 284 140 36 chr12 84184381 84184495 -37073035 + MLT1D LTR MaLR 180 291 -214 3 1227 352 0 20 20 chr12 84184495 84184544 -37072986 + (GGGAGA)n Simple_repeat Simple_repeat 2 50 0 3 1227 450 284 140 36 chr12 84184544 84184707 -37072823 + MLT1D LTR MaLR 292 486 -19 3 1227 23 54 0 0 chr12 84184982 84185019 -37072511 + AT_rich Low_complexity Low_complexity 1 37 0 3 1227 291 130 0 0 chr12 84185247 84185301 -37072229 + (CGTG)n Simple_repeat Simple_repeat 4 57 0 3 1227 1077 240 54 63 chr12 84185338 84185551 -37071979 - MTE2a LTR MaLR -2 377 167 3 1227 1143 44 0 0 chr12 84185551 84185686 -37071844 + B1_Mus1 SINE Alu 1 135 -13 3 1227 207 0 0 0 chr12 84185686 84185709 -37071821 + (G)n Simple_repeat Simple_repeat 1 23 0 3 1227 1077 240 54 63 chr12 84185709 84185828 -37071702 - MTE2a LTR MaLR -213 166 48 3 1227 816 231 179 58 chr12 84185869 84186126 -37071404 - B4A SINE B4 -4 288 1 3 1227 412 308 70 0 chr12 84186197 84186340 -37071190 - MER5A1 DNA MER1_type -11 155 3 3 1227 320 269 170 113 chr12 84186605 84186852 -37070678 - ORR1E LTR MaLR -12 347 87 3 1227 297 359 15 15 chr12 84186895 84187025 -37070505 - MLT1A1 LTR MaLR -278 130 1 3 1227 40 37 0 0 chr12 84187114 84187168 -37070362 + AT_rich Low_complexity Low_complexity 1 54 0 3 1227 39 60 0 0 chr12 84187205 84187272 -37070258 + AT_rich Low_complexity Low_complexity 1 67 0 3 1227 1527 232 29 65 chr12 84187398 84187780 -37069750 - MTE2b LTR MaLR -11 368 1 3 1227 5260 3 0 0 chr12 84189147 84189719 -37067811 + L1Md_A LINE L1 6011 6582 0 3 1227 367 244 11 32 chr12 84189966 84189978 -37067552 - PB1D10 SINE Alu 0 117 108 3 1227 180 0 0 0 chr12 84189978 84189998 -37067532 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 3 1227 367 244 11 32 chr12 84189998 84190078 -37067452 - PB1D10 SINE Alu -10 107 27 3 1227 272 321 12 0 chr12 84190589 84190673 -37066857 + MER58B DNA MER1_type 252 336 -5 3 1227 405 345 63 68 chr12 84190770 84191150 -37066380 + HAL1 LINE L1 756 1133 -1374 3 1227 353 326 133 31 chr12 84191313 84191705 -37065825 + HAL1 LINE L1 1390 1821 -686 3 1227 375 23 0 0 chr12 84192201 84192245 -37065285 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1227 198 0 0 0 chr12 84192854 84192876 -37064654 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1227 330 259 58 41 chr12 84193884 84194005 -37063525 + MER119 DNA MER1_type 116 238 -345 3 1227 9826 72 0 0 chr12 84194009 84195292 -37062238 - L1_Mm LINE L1 -2503 3380 2098 3 1227 5063 54 5 3 chr12 84195293 84195921 -37061609 + L1Md_F2 LINE L1 5953 6581 -1 3 1227 2290 163 32 19 chr12 84195990 84196402 -37061128 - MTC LTR MaLR 0 421 5 3 1227 728 282 53 5 chr12 84196410 84196617 -37060913 + MER119 DNA MER1_type 367 583 0 3 1227 242 301 63 42 chr12 84196754 84196896 -37060634 - L1M5 LINE L1 -298 5826 5682 3 1227 1442 270 25 17 chr12 84197625 84197987 -37059543 - ORR1D2 LTR MaLR -1 369 5 3 1227 957 113 0 0 chr12 84198111 84198288 -37059242 + (TC)n Simple_repeat Simple_repeat 2 178 0 3 1227 283 161 0 69 chr12 84198483 84198570 -37058960 + C-rich Low_complexity Low_complexity 6 86 0 3 1227 441 0 0 0 chr12 84200936 84200985 -37056545 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1227 1047 211 0 56 chr12 84201021 84201237 -37056293 - B3 SINE B2 -8 208 5 3 1227 303 375 120 5 chr12 84201355 84201564 -37055966 + MLT1G3 LTR MaLR 132 364 -231 3 1227 446 323 9 61 chr12 84201861 84202075 -37055455 - MLT1A0 LTR MaLR 0 365 163 3 1227 308 307 80 0 chr12 84202018 84202106 -37055424 + ID_B1 SINE B4 84 178 -46 3 1227 409 305 90 70 chr12 84202106 84202307 -37055223 - MLT1A0 LTR MaLR -160 205 1 3 1227 753 299 160 16 chr12 84202375 84202694 -37054836 - MLT1A0-int LTR MaLR -94 1277 913 3 1227 845 352 24 77 chr12 84202957 84203372 -37054158 - MLT1A0-int LTR MaLR -927 808 416 3 1227 269 174 10 61 chr12 84203428 84203526 -37054004 + (TATAA)n Simple_repeat Simple_repeat 4 96 0 3 1227 653 262 122 105 chr12 84203547 84203821 -37053709 - MLT1A0-int LTR MaLR -1326 409 127 3 1227 180 0 0 0 chr12 84203821 84203841 -37053689 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1227 653 262 122 105 chr12 84203841 84203967 -37053563 - MLT1A0-int LTR MaLR -1609 126 2 3 1227 952 294 75 18 chr12 84203968 84204300 -37053230 - MLT1A0 LTR MaLR 0 365 15 3 1227 356 259 0 12 chr12 84204592 84204678 -37052852 + MTD LTR MaLR 26 110 -309 3 1227 277 217 48 71 chr12 84204624 84204755 -37052775 - MTE2a LTR MaLR -288 131 1 3 1227 836 307 112 94 chr12 84205013 84205451 -37052079 + MLT1C LTR MaLR 6 451 -16 3 1227 251 277 31 41 chr12 84206289 84206387 -37051143 - MER3 DNA MER1_type -6 203 107 3 1227 294 29 0 0 chr12 84206763 84206798 -37050732 + (GGGGA)n Simple_repeat Simple_repeat 3 37 0 3 1227 349 300 151 13 chr12 84206966 84207151 -37050379 + MIR SINE MIR 30 224 -38 3 1227 1097 128 0 6 chr12 84207899 84208080 -37049450 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1227 313 211 289 0 chr12 84208082 84208186 -37049344 - HAL1-3A_ME LINE L1 -740 2118 1985 3 1227 306 0 0 0 chr12 84208303 84208337 -37049193 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1227 1208 68 0 0 chr12 84208339 84208485 -37049045 - B1_Mus2 SINE Alu -1 146 1 3 1227 1429 254 167 13 chr12 84209095 84209557 -37047973 - MT2A LTR ERVL 0 533 1 3 1227 22 0 0 0 chr12 84209711 84209733 -37047797 + AT_rich Low_complexity Low_complexity 1 22 0 3 1227 560 301 111 70 chr12 84210143 84210407 -37047123 - MTEa LTR MaLR -19 360 77 3 1227 477 0 0 0 chr12 84210407 84210460 -37047070 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1227 560 301 111 70 chr12 84210460 84210538 -37046992 - MTEa LTR MaLR -303 76 4 3 1227 637 211 9 0 chr12 84212420 84212534 -37044996 - B4A SINE B4 -39 253 139 3 1227 374 187 54 11 chr12 84212548 84212640 -37044890 - B4A SINE B4 -196 96 1 3 1227 181 180 0 39 chr12 84214450 84214502 -37043028 + C-rich Low_complexity Low_complexity 3 52 0 3 1227 357 43 0 0 chr12 84215741 84215788 -37041742 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1227 211 286 0 51 chr12 84216143 84216202 -37041328 - L2a LINE L2 -15 3411 3356 3 1227 829 227 58 31 chr12 84216330 84216349 -37041181 - B3 SINE B2 -4 212 195 3 1227 450 0 0 0 chr12 84216349 84216399 -37041131 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1227 829 227 58 31 chr12 84216399 84216570 -37040960 - B3 SINE B2 -22 194 17 3 1227 453 340 59 40 chr12 84216677 84216879 -37040651 + MER20 DNA MER1_type 8 213 -6 3 1227 181 191 0 87 chr12 84217533 84217579 -37039951 - L4 LINE RTE -1109 920 879 3 1227 570 344 88 5 chr12 84217606 84217822 -37039708 - Tigger5 DNA MER2_type -2172 234 1 3 1227 206 315 163 8 chr12 84218027 84218148 -37039382 - L2a LINE L2 -16 3410 3224 3 1227 329 335 63 42 chr12 84218960 84219150 -37038380 - L1MC5 LINE L1 -264 7697 7504 3 1227 344 330 0 0 chr12 84219280 84219398 -37038132 - L1MC5 LINE L1 -539 7422 7305 3 1227 441 0 0 0 chr12 84219439 84219488 -37038042 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1227 284 202 18 0 chr12 84219559 84219673 -37037857 + (TCTG)n Simple_repeat Simple_repeat 3 118 0 3 1227 216 178 0 0 chr12 84219742 84219787 -37037743 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 3 1227 1077 157 0 0 chr12 84219789 84220139 -37037391 + (TG)n Simple_repeat Simple_repeat 1 350 0 3 1227 681 308 143 49 chr12 84220150 84220788 -37036742 - L1MC5 LINE L1 -721 7240 6625 3 1227 242 341 28 35 chr12 84220803 84220946 -37036584 + RMER12 LTR ERVK 715 856 -466 3 1227 199 308 91 70 chr12 84221569 84221588 -37035942 + MIRb SINE MIR 96 114 -154 3 1227 1873 190 43 31 chr12 84221588 84222002 -37035528 + MTD LTR MaLR 1 419 0 3 1227 199 308 91 70 chr12 84222002 84222125 -37035405 + MIRb SINE MIR 115 241 -27 3 1227 447 255 10 20 chr12 84222256 84222356 -37035174 - Tigger5 DNA MER2_type 0 2406 2308 3 1227 342 344 58 32 chr12 84222453 84222609 -37034921 - Tigger5 DNA MER2_type -2227 179 20 3 1227 590 316 99 45 chr12 84222660 84223012 -37034518 - MLT1A LTR MaLR 0 374 4 3 1227 321 358 27 22 chr12 84224270 84224453 -37033077 + MIRc SINE MIR 71 254 -14 3 1227 520 217 75 0 chr12 84224536 84224642 -37032888 + PB1D9 SINE Alu 6 119 -1 3 1227 648 274 7 0 chr12 84224704 84224839 -37032691 + B1F SINE Alu 13 148 -1 3 1227 215 345 0 35 chr12 84225722 84225809 -37031721 + B1_Mur3 SINE Alu 47 130 -19 3 1227 181 303 66 22 chr12 84225981 84226072 -37031458 - L2c LINE L2 -16 3371 3277 3 1227 302 259 0 47 chr12 84226992 84227077 -37030453 + ID4_ SINE ID 1 81 -2 3 1227 216 271 69 23 chr12 84227166 84227253 -37030277 - L3 LINE CR1 -208 4281 4191 3 1227 190 340 38 70 chr12 84227605 84227763 -37029767 + MIRb SINE MIR 19 171 -97 3 1227 203 217 16 48 chr12 84228910 84228973 -37028557 + GA-rich Low_complexity Low_complexity 2 62 0 3 1227 432 0 0 0 chr12 84229539 84229587 -37027943 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1227 244 346 53 30 chr12 84230044 84230175 -37027355 + L2a LINE L2 3288 3421 -5 3 1227 322 324 13 26 chr12 84230827 84230979 -37026551 - MLT1A1 LTR MaLR -12 396 247 3 1227 808 280 108 29 chr12 84231507 84231963 -37025567 - L1MA8 LINE L1 -10 6281 5790 3 1227 432 134 29 36 chr12 84232000 84232139 -37025391 + (TG)n Simple_repeat Simple_repeat 1 138 0 3 1227 481 189 36 12 chr12 84232190 84232356 -37025174 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 1227 357 183 0 0 chr12 84232418 84232489 -37025041 - L1MA8 LINE L1 -508 5789 5719 3 1227 333 0 0 0 chr12 84232572 84232609 -37024921 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1227 897 216 52 29 chr12 84232633 84232843 -37024687 + B3 SINE B2 2 216 0 3 1227 528 45 0 0 chr12 84233436 84233503 -37024027 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1227 998 254 38 45 chr12 84233561 84233850 -37023680 - B4A SINE B4 -1 291 5 3 1227 981 249 179 21 chr12 84233863 84234339 -37023191 - L1MD2 LINE L1 -2 6357 5807 4 1227 489 34 0 0 chr12 84235596 84235655 -37021875 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1227 213 108 0 0 chr12 84237309 84237346 -37020184 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1227 477 0 0 0 chr12 84237481 84237534 -37019996 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1227 189 0 0 0 chr12 84238610 84238631 -37018899 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1227 348 83 0 0 chr12 84238845 84238893 -37018637 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 4 1227 2393 61 3 10 chr12 84239857 84240171 -37017359 + L1Md_F2 LINE L1 6271 6582 0 4 1227 3794 104 9 2 chr12 84242515 84243047 -37014483 - L1_Mus3 LINE L1 0 6638 6103 4 1227 580 311 12 36 chr12 84243147 84243314 -37014216 - B3A SINE B2 0 198 36 4 1227 401 36 0 18 chr12 84243623 84243679 -37013851 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1227 226 274 66 131 chr12 84244886 84245008 -37012522 + MIR3 SINE MIR 70 183 -25 4 1227 630 0 0 0 chr12 84247175 84247245 -37010285 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1227 786 109 0 0 chr12 84248445 84248564 -37008966 + (GGAA)n Simple_repeat Simple_repeat 4 122 0 4 1227 234 0 0 0 chr12 84250729 84250755 -37006775 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1227 492 254 15 102 chr12 84251103 84251300 -37006230 + AmnSINE1 SINE SINE 369 548 -27 4 1227 225 94 0 0 chr12 84251320 84251352 -37006178 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 4 1227 861 10 0 0 chr12 84254157 84254255 -37003275 + (TC)n Simple_repeat Simple_repeat 1 98 0 4 1227 216 0 0 0 chr12 84254255 84254278 -37003252 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1227 376 213 100 24 chr12 84254281 84254456 -37003074 - L1ME2 LINE L1 -264 6180 5981 4 1227 970 218 117 31 chr12 84256824 84257080 -37000450 + B4 SINE B4 2 279 -13 4 1227 294 98 0 0 chr12 84257094 84257145 -37000385 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 4 1227 333 0 0 0 chr12 84257279 84257316 -37000214 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1227 293 324 9 26 chr12 84257775 84257889 -36999641 - MamSINE1 SINE tRNA -2 288 177 4 1227 930 93 0 0 chr12 84260367 84260506 -36997024 + (GGAA)n Simple_repeat Simple_repeat 2 140 0 4 1227 204 40 0 0 chr12 84261744 84261769 -36995761 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 4 1227 1279 188 14 35 chr12 84263880 84264166 -36993364 - BGLII_A LTR ERVK -3 442 163 4 1227 1028 221 57 15 chr12 84264138 84264400 -36993130 - BGLII_A LTR ERVK -168 277 5 4 1227 1011 159 0 0 chr12 84265769 84266068 -36991462 + (TG)n Simple_repeat Simple_repeat 1 299 0 4 1227 818 256 74 0 chr12 84266084 84266354 -36991176 - L1ME1 LINE L1 -15 6164 5875 4 1227 414 0 0 0 chr12 84267296 84267342 -36990188 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1227 210 207 0 0 chr12 84267535 84267593 -36989937 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1227 1191 93 0 0 chr12 84267772 84267933 -36989597 + B2_Mm2 SINE B2 1 161 -34 4 1227 180 0 0 0 chr12 84267934 84267954 -36989576 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1227 1749 291 68 69 chr12 84268089 84269541 -36987989 + L1MB7 LINE L1 4730 6175 -9 4 1227 352 176 0 75 chr12 84269598 84269678 -36987852 + HAL1-3A_ME LINE L1 1978 2051 -807 4 1227 423 56 0 0 chr12 84270499 84270553 -36986977 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1227 1061 266 16 112 chr12 84271291 84271604 -36985926 + B4 SINE B4 2 284 -8 4 1227 267 31 0 0 chr12 84271611 84271643 -36985887 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1227 796 185 14 22 chr12 84274107 84274245 -36983285 + B3A SINE B2 3 139 -59 4 1227 207 0 0 0 chr12 84274250 84274273 -36983257 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1227 7799 101 23 3 chr12 84274301 84276156 -36981374 - L1_Mus4 LINE L1 -7 6629 4724 4 1227 698 213 14 41 chr12 84276170 84276317 -36981213 + B1_Mur2 SINE Alu 1 143 -6 4 1227 268 288 69 99 chr12 84277737 84277868 -36979662 - L2c LINE L2 -1 3386 3260 4 1227 417 206 35 46 chr12 84278638 84278811 -36978719 + (TG)n Simple_repeat Simple_repeat 2 172 0 4 1227 1142 230 17 30 chr12 84278823 84279119 -36978411 - B4A SINE B4 0 292 1 4 1228 1728 292 49 21 chr12 84281009 84281233 -36976297 + MLT2B3 LTR ERVL 1 220 -334 4 1228 576 0 0 0 chr12 84281233 84281297 -36976233 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1228 1728 292 49 21 chr12 84281297 84281583 -36975947 + MLT2B3 LTR ERVL 221 525 -29 4 1228 361 323 137 49 chr12 84282218 84282524 -36975006 - L2a LINE L2 -17 3409 3077 4 1228 1336 95 21 0 chr12 84282992 84283181 -36974349 - B2_Mm2 SINE B2 -1 194 2 4 1228 1225 266 83 29 chr12 84283298 84283743 -36973787 - Lx8 LINE L1 -2 7471 7003 4 1228 345 309 77 67 chr12 84283913 84284107 -36973423 - LTR16A LTR ERVL -10 441 246 4 1228 756 99 0 0 chr12 84284463 84284574 -36972956 + (TC)n Simple_repeat Simple_repeat 2 112 0 4 1228 239 198 168 50 chr12 84284574 84284675 -36972855 - PB1D10 SINE Alu 0 117 5 4 1228 185 0 40 0 chr12 84284992 84285017 -36972513 + (CCA)n Simple_repeat Simple_repeat 2 27 0 4 1228 303 306 0 0 chr12 84285095 84285203 -36972327 + L1M5 LINE L1 5324 5431 -693 4 1228 423 0 0 0 chr12 84285236 84285283 -36972247 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1228 763 221 52 11 chr12 84285572 84285746 -36971784 + B3A SINE B2 2 182 -16 4 1228 506 207 0 6 chr12 84285765 84285945 -36971585 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1228 223 227 30 0 chr12 84285945 84286011 -36971519 + (CATA)n Simple_repeat Simple_repeat 3 70 0 4 1228 326 362 61 39 chr12 84286057 84286287 -36971243 + HAL1 LINE L1 1276 1510 -997 4 1228 227 232 70 28 chr12 84286292 84286363 -36971167 + L1MEe LINE L1 170 243 -4611 4 1228 913 220 5 73 chr12 84287289 84287495 -36970035 + B3A SINE B2 1 192 -6 4 1228 265 392 45 81 chr12 84288922 84289144 -36968386 + LTR78 LTR ERV1 87 300 -1004 4 1228 1007 256 165 18 chr12 84289479 84289806 -36967724 + MTEa LTR MaLR 5 379 0 4 1228 553 271 74 27 chr12 84289989 84290137 -36967393 + RSINE1 SINE B4 11 165 0 4 1228 260 53 26 0 chr12 84290149 84290187 -36967343 + (AATTG)n Simple_repeat Simple_repeat 2 40 0 4 1228 188 35 35 0 chr12 84290266 84290295 -36967235 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 1228 593 310 41 20 chr12 84290295 84290539 -36966991 + LTR78 LTR ERV1 1054 1302 -2 4 1228 374 184 45 35 chr12 84292959 84293066 -36964464 - B1_Mus2 SINE Alu -8 141 23 4 1228 273 250 35 138 chr12 84292986 84293099 -36964431 - MT2B LTR ERVL -346 255 155 4 1228 506 318 86 47 chr12 84293099 84293546 -36963984 - MLT1D LTR MaLR -2 625 17 4 1228 600 246 60 0 chr12 84293714 84293848 -36963682 + MTE2b LTR MaLR 22 163 -216 4 1228 760 270 44 24 chr12 84294240 84294445 -36963085 + B3 SINE B2 2 210 -6 4 1228 928 206 33 42 chr12 84294461 84294674 -36962856 + MTE2b LTR MaLR 169 379 0 4 1228 324 326 55 9 chr12 84294834 84294973 -36962557 + MIR SINE MIR 44 191 -77 4 1228 240 327 70 58 chr12 84295147 84295319 -36962211 + MLT1M LTR MaLR 95 268 -404 4 1228 342 0 0 0 chr12 84296767 84296805 -36960725 + (TTGG)n Simple_repeat Simple_repeat 1 38 0 4 1228 1272 89 0 0 chr12 84296805 84296985 -36960545 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 4 1228 629 128 9 0 chr12 84296991 84297071 -36960459 + (TTGG)n Simple_repeat Simple_repeat 3 82 0 4 1228 1155 107 0 0 chr12 84297071 84297249 -36960281 + (GCTG)n Simple_repeat Simple_repeat 1 178 0 4 1228 629 128 9 0 chr12 84297249 84297277 -36960253 + (TTGG)n Simple_repeat Simple_repeat 2 30 0 4 1228 993 139 0 0 chr12 84297282 84297455 -36960075 + (GCTG)n Simple_repeat Simple_repeat 3 175 0 4 1228 954 127 0 0 chr12 84297467 84297625 -36959905 + (TTGG)n Simple_repeat Simple_repeat 1 158 0 4 1228 522 119 0 0 chr12 84297630 84297714 -36959816 + (GCTG)n Simple_repeat Simple_repeat 4 87 0 4 1228 234 0 0 0 chr12 84298556 84298582 -36958948 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1228 393 22 0 0 chr12 84298582 84298627 -36958903 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1228 631 237 59 7 chr12 84299368 84299504 -36958026 + RSINE1 SINE B4 4 146 -19 4 1228 273 57 0 0 chr12 84299513 84299548 -36957982 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1228 917 98 7 22 chr12 84300496 84300632 -36956898 - B1_Mur4 SINE Alu -16 134 1 4 1228 291 145 0 0 chr12 84301146 84301215 -36956315 + (A)n Simple_repeat Simple_repeat 1 69 0 4 1228 183 80 0 0 chr12 84302745 84302770 -36954760 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 4 1228 369 0 0 0 chr12 84303355 84303396 -36954134 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1228 1470 138 4 9 chr12 84304116 84304342 -36953188 - URR1B DNA MER1_type 0 225 1 4 1228 486 0 0 0 chr12 84304452 84304506 -36953024 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1228 246 189 198 26 chr12 84304507 84304613 -36952917 - MLT1A0 LTR MaLR -38 352 231 4 1228 366 23 0 0 chr12 84305212 84305255 -36952275 + (TGG)n Simple_repeat Simple_repeat 1 43 0 4 1228 645 14 0 0 chr12 84305256 84305330 -36952200 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1228 756 80 0 0 chr12 84305951 84306064 -36951466 + (TG)n Simple_repeat Simple_repeat 1 113 0 4 1228 198 71 0 0 chr12 84308415 84308443 -36949087 + (G)n Simple_repeat Simple_repeat 1 28 0 4 1228 217 385 0 0 chr12 84309691 84309769 -36947761 + G-rich Low_complexity Low_complexity 5 82 0 4 1228 700 200 12 0 chr12 84310114 84310284 -36947246 + (CA)n Simple_repeat Simple_repeat 1 172 0 4 1228 522 75 0 0 chr12 84310974 84311054 -36946476 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 1228 432 0 0 0 chr12 84311054 84311102 -36946428 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1228 845 19 10 0 chr12 84312885 84312988 -36944542 + (TC)n Simple_repeat Simple_repeat 1 104 0 5 1228 405 0 0 0 chr12 84312989 84313034 -36944496 + (TCCCC)n Simple_repeat Simple_repeat 1 45 0 5 1228 252 0 0 0 chr12 84313313 84313341 -36944189 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 5 1228 196 278 0 0 chr12 84313612 84313666 -36943864 - MIRc SINE MIR -142 126 73 5 1228 362 38 0 19 chr12 84313740 84313793 -36943737 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1228 448 316 19 32 chr12 84314103 84314260 -36943270 - MIRc SINE MIR -90 178 24 5 1228 205 295 40 111 chr12 84314728 84314854 -36942676 - L3 LINE CR1 -2287 2202 2086 5 1228 319 262 88 51 chr12 84317143 84317280 -36940250 + MIR SINE MIR 113 254 -8 5 1228 2560 110 42 30 chr12 84317596 84317998 -36939532 - MTB_Mm LTR MaLR 0 407 1 5 1228 240 273 51 25 chr12 84319818 84319897 -36937633 - PB1D10 SINE Alu -1 116 36 5 1228 270 106 0 0 chr12 84319933 84319980 -36937550 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1228 339 243 127 91 chr12 84320342 84320595 -36936935 + L1MC5 LINE L1 6778 7039 -922 5 1228 347 359 98 5 chr12 84320556 84320780 -36936750 - L1MC4a LINE L1 -2 7880 7636 5 1228 822 248 29 10 chr12 84320938 84321142 -36936388 - ID_B1 SINE B4 -12 212 5 5 1228 313 173 147 0 chr12 84321143 84321218 -36936312 - L1MC4a LINE L1 -258 7624 7539 5 1228 459 346 109 49 chr12 84321226 84321842 -36935688 - Lx8 LINE L1 -1 7472 6820 5 1228 844 271 100 65 chr12 84321985 84322557 -36934973 - L1MC4a LINE L1 -569 7313 6722 5 1228 263 318 7 83 chr12 84322798 84322942 -36934588 + MLT1A1 LTR MaLR 272 404 -4 5 1228 332 365 82 18 chr12 84322942 84323052 -36934478 - L1MC4a LINE L1 -1306 6689 6572 5 1228 387 0 0 0 chr12 84323052 84323095 -36934435 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1228 332 365 82 18 chr12 84323095 84323154 -36934376 - L1MC4a LINE L1 -1424 6571 6509 5 1228 2300 189 32 42 chr12 84323180 84323705 -36933825 - Lx5 LINE L1 -3 7047 6528 5 1228 595 292 92 4 chr12 84323735 84323986 -36933544 - L1MC4a LINE L1 -1412 6470 6198 5 1228 742 320 146 20 chr12 84324157 84324807 -36932723 - L1MC4a LINE L1 -1890 5992 5261 5 1228 605 313 44 30 chr12 84324894 84325267 -36932263 - L1MC4a LINE L1 -989 5157 4765 5 1228 22 0 0 0 chr12 84325273 84325295 -36932235 + GC_rich Low_complexity Low_complexity 1 22 0 5 1228 941 274 5 15 chr12 84325360 84325560 -36931970 - ID_B1 SINE B4 -2 222 25 5 1228 355 347 45 11 chr12 84325604 84325782 -36931748 - L1MC4a LINE L1 -1459 4687 4504 5 1228 764 263 20 31 chr12 84325857 84326053 -36931477 - B3A SINE B2 -4 194 1 5 1228 1053 258 7 71 chr12 84326408 84326717 -36930813 + B4A SINE B4 4 292 0 5 1228 568 193 35 0 chr12 84330162 84330276 -36927254 + PB1D9 SINE Alu 3 120 0 5 1228 279 0 0 0 chr12 84330276 84330307 -36927223 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1228 200 236 36 0 chr12 84330326 84330381 -36927149 + GA-rich Low_complexity Low_complexity 1 57 0 5 1228 390 245 100 36 chr12 84330434 84330544 -36926986 + PB1D10 SINE Alu 1 117 0 5 1228 266 214 0 0 chr12 84330698 84330740 -36926790 + 5S rRNA rRNA 1 42 -79 5 1228 431 254 22 87 chr12 84330960 84331098 -36926432 + RMER30 DNA MER1_type 2 130 -72 5 1228 1207 163 24 9 chr12 84331637 84331848 -36925682 - B3 SINE B2 0 216 3 5 1228 281 333 21 0 chr12 84331961 84332054 -36925476 + BC1_Mm scRNA scRNA 3 97 -55 5 1228 212 143 0 23 chr12 84332057 84332100 -36925430 + GA-rich Low_complexity Low_complexity 5 46 0 5 1228 611 280 16 52 chr12 84333378 84333470 -36924060 + B4A SINE B4 1 84 -208 5 1228 273 89 0 0 chr12 84333470 84333515 -36924015 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 1228 611 280 16 52 chr12 84333515 84333614 -36923916 + B4A SINE B4 85 185 -107 5 1228 180 111 0 0 chr12 84333680 84333707 -36923823 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1228 287 235 284 33 chr12 84334148 84334359 -36923171 + Lx8 LINE L1 7208 7471 -2 5 1228 182 370 12 0 chr12 84336620 84336701 -36920829 - L2c LINE L2 -5 3421 3340 5 1228 768 333 81 34 chr12 84336734 84337091 -36920439 + MLT1F2 LTR MaLR 1 374 -186 5 1228 266 342 62 72 chr12 84337130 84337338 -36920192 - L2c LINE L2 -133 3254 3049 5 1228 205 289 157 49 chr12 84337657 84337861 -36919669 - L2c LINE L2 -691 2728 2503 5 1228 296 245 30 69 chr12 84338406 84338427 -36919103 + B4 SINE B4 70 86 -206 5 1228 550 205 14 93 chr12 84338427 84338567 -36918963 + B1_Mur4 SINE Alu 1 129 -21 5 1228 510 74 101 0 chr12 84338578 84338727 -36918803 + GA-rich Low_complexity Low_complexity 2 165 0 5 1228 864 6 91 0 chr12 84338727 84338892 -36918638 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1228 620 303 180 50 chr12 84339477 84339672 -36917858 + MLT1F2 LTR MaLR 4 211 -349 5 1228 270 106 0 0 chr12 84339672 84339719 -36917811 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1228 620 312 167 35 chr12 84339719 84340023 -36917507 + MLT1F2 LTR MaLR 212 559 -1 5 1228 617 249 90 6 chr12 84340101 84340267 -36917263 + B3A SINE B2 3 182 -16 5 1228 933 199 109 5 chr12 84340458 84340650 -36916880 + B3 SINE B2 2 213 -3 5 1228 566 275 0 0 chr12 84341064 84341184 -36916346 - PB1D9 SINE Alu 0 120 1 5 1228 938 184 60 86 chr12 84341486 84341718 -36915812 - Lx5 LINE L1 -1 7049 6824 5 1228 1805 102 0 4 chr12 84341717 84341963 -36915567 + Lx4B LINE L1 6505 6749 -309 5 1228 182 37 37 0 chr12 84341965 84341992 -36915538 + (CACCC)n Simple_repeat Simple_repeat 5 32 0 5 1228 390 359 25 50 chr12 84343626 84343828 -36913702 - MER117 DNA MER1_type 0 197 1 5 1228 336 48 0 0 chr12 84344625 84344667 -36912863 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1228 1038 164 76 11 chr12 84346162 84346347 -36911183 + B3 SINE B2 15 211 -5 5 1228 4110 42 0 0 chr12 84346682 84347163 -36910367 + L1Md_T LINE L1 6101 6581 -1 5 1228 212 330 75 21 chr12 84347183 84347276 -36910254 + L2 LINE L2 1489 1586 -1833 5 1228 1140 144 118 15 chr12 84347928 84348132 -36909398 + URR1A DNA MER1_type 1 225 -1 5 1228 576 213 314 0 chr12 84348210 84348379 -36909151 - ID_B1 SINE B4 -2 222 1 5 1228 227 226 176 12 chr12 84348508 84348593 -36908937 - MIRb SINE MIR -13 249 151 5 1228 251 369 27 0 chr12 84349564 84349713 -36907817 - MIR3 SINE MIR -19 189 37 5 1228 452 278 0 9 chr12 84350531 84350640 -36906890 - B3A SINE B2 -57 141 34 5 1228 717 253 15 24 chr12 84351186 84351375 -36906155 + B3A SINE B2 10 211 -5 5 1228 873 149 68 57 chr12 84351378 84351570 -36905960 + B2_Mm2 SINE B2 1 194 -1 5 1228 198 0 0 0 chr12 84352619 84352641 -36904889 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 1228 333 68 0 0 chr12 84352668 84352712 -36904818 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 5 1228 1192 131 23 0 chr12 84352881 84353057 -36904473 + B2_Mm2 SINE B2 2 181 -14 5 1228 323 101 20 32 chr12 84353123 84353222 -36904308 + B2_Mm2 SINE B2 47 180 -15 5 1228 795 97 0 0 chr12 84353222 84353336 -36904194 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 5 1228 221 306 293 6 chr12 84354443 84354617 -36902913 - L3b LINE CR1 -186 296 73 5 1228 225 273 0 0 chr12 84354896 84354940 -36902590 + B1F2 SINE Alu 1 44 -105 5 1228 301 294 0 14 chr12 84354950 84355019 -36902511 + ID4 SINE ID 16 83 0 5 1228 243 293 180 49 chr12 84355019 84355072 -36902458 + ID_B1 SINE B4 16 153 -71 5 1228 232 265 72 14 chr12 84355030 84355099 -36902431 + PB1D10 SINE Alu 32 104 -13 5 1228 216 0 0 0 chr12 84355533 84355557 -36901973 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1228 444 264 166 20 chr12 84356348 84356499 -36901031 + MER58A DNA MER1_type 42 214 -10 5 1228 201 94 0 0 chr12 84356731 84356763 -36900767 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1228 238 226 38 0 chr12 84357309 84357375 -36900155 + MER102c DNA MER1_type 68 142 -189 5 1228 929 209 233 4 chr12 84357375 84357611 -36899919 + B4A SINE B4 3 292 0 5 1228 301 238 24 6 chr12 84357611 84357776 -36899754 + (CA)n Simple_repeat Simple_repeat 1 168 0 5 1228 949 259 69 92 chr12 84358584 84359006 -36898524 + L1MB3 LINE L1 5741 6152 -31 5 1228 790 233 69 69 chr12 84359032 84359322 -36898208 + B4A SINE B4 1 290 -2 5 1228 207 0 0 0 chr12 84361198 84361221 -36896309 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1228 213 39 0 0 chr12 84361659 84361685 -36895845 + (AGCTG)n Simple_repeat Simple_repeat 4 29 0 5 1228 195 42 0 0 chr12 84361765 84361789 -36895741 + (GGA)n Simple_repeat Simple_repeat 2 25 0 5 1228 258 32 0 0 chr12 84363281 84363312 -36894218 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1228 351 0 0 0 chr12 84363582 84363621 -36893909 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1228 181 226 31 46 chr12 84363813 84363878 -36893652 - L2c LINE L2 -82 3305 3242 5 1228 618 300 43 32 chr12 84364360 84364642 -36892888 + L1MC4 LINE L1 7382 7666 -376 5 1228 263 224 195 17 chr12 84364661 84364779 -36892751 + L1MC4 LINE L1 7696 7834 -48 5 1228 350 356 140 45 chr12 84364941 84365206 -36892324 - B4 SINE B4 -2 290 1 5 1228 1041 145 120 39 chr12 84365533 84365741 -36891789 - URR1A DNA MER1_type 0 226 2 5 1228 23 0 0 0 chr12 84366266 84366289 -36891241 + AT_rich Low_complexity Low_complexity 1 23 0 5 1228 429 311 102 31 chr12 84367182 84367378 -36890152 + MIR SINE MIR 23 232 -30 5 1228 746 288 0 0 chr12 84368690 84368853 -36888677 - RSINE1 SINE B4 0 165 3 5 1228 225 214 0 0 chr12 84369230 84369272 -36888258 + A-rich Low_complexity Low_complexity 1 42 0 5 1228 419 0 20 0 chr12 84369921 84369972 -36887558 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1228 21 36 0 0 chr12 84369984 84370012 -36887518 + AT_rich Low_complexity Low_complexity 1 28 0 5 1228 442 274 61 23 chr12 84375543 84375674 -36881856 + ID_B1 SINE B4 81 216 -8 5 1228 231 323 0 0 chr12 84375697 84375759 -36881771 + ID4 SINE ID 2 63 -20 5 1228 1095 94 0 0 chr12 84376383 84376521 -36881009 - B1_Mus2 SINE Alu -9 138 1 5 1228 240 203 34 0 chr12 84376918 84376977 -36880553 + MTEa LTR MaLR 75 135 -224 5 1228 280 315 34 0 chr12 84377099 84377188 -36880342 + MTEa LTR MaLR 288 379 0 5 1228 305 321 117 0 chr12 84379861 84379998 -36877532 + L3b LINE CR1 95 247 -235 5 1228 323 239 45 50 chr12 84380248 84380377 -36877153 + L2c LINE L2 3233 3366 -9 6 1228 891 249 73 9 chr12 84380715 84380934 -36876596 + B4 SINE B4 1 233 -59 6 1228 375 305 73 89 chr12 84381055 84381314 -36876216 - ORR1E LTR MaLR -96 263 9 6 1228 760 258 19 12 chr12 84381683 84381844 -36875686 + RSINE1 SINE B4 2 163 -2 6 1228 737 149 101 4 chr12 84382183 84382360 -36875170 + B3 SINE B2 3 188 -7 6 1228 903 262 62 68 chr12 84382810 84383146 -36874384 + MLT1A LTR MaLR 25 358 -16 6 1228 1212 246 155 18 chr12 84383148 84383499 -36874031 + MTD LTR MaLR 3 405 -14 6 1228 2092 185 32 15 chr12 84383499 84383911 -36873619 + MTD LTR MaLR 1 419 0 6 1228 443 288 22 45 chr12 84384099 84384277 -36873253 + MIRb SINE MIR 48 221 -47 6 1228 207 270 66 26 chr12 84384470 84384546 -36872984 + MIR SINE MIR 152 230 -32 6 1228 197 324 75 45 chr12 84385132 84385365 -36872165 - MIR SINE MIR -19 243 13 6 1228 30 45 0 0 chr12 84386146 84386190 -36871340 + AT_rich Low_complexity Low_complexity 1 44 0 6 1228 394 236 7 7 chr12 84386803 84386948 -36870582 + (TGGA)n Simple_repeat Simple_repeat 2 146 0 6 1228 1195 49 0 14 chr12 84387012 84387158 -36870372 - B1_Mus1 SINE Alu -2 146 3 6 1228 3489 23 8 2 chr12 84388873 84389267 -36868263 - MTA_Mm LTR MaLR 0 396 1 6 1228 7917 72 6 69 chr12 84389267 84390439 -36867091 - MTA_Mm-int LTR MaLR 0 1098 1 6 1228 3363 33 10 2 chr12 84390439 84390832 -36866698 - MTA_Mm LTR MaLR 0 396 1 6 1228 7960 72 6 67 chr12 84390832 84392001 -36865529 - MTA_Mm-int LTR MaLR 0 1098 1 6 1228 3373 43 2 2 chr12 84392001 84392397 -36865133 - MTA_Mm LTR MaLR 0 396 1 6 1228 309 284 58 80 chr12 84393169 84393260 -36864270 + MLT1B LTR MaLR 16 103 -287 6 1228 588 250 161 0 chr12 84393260 84393408 -36864122 + B3A SINE B2 4 177 -21 6 1228 372 43 0 0 chr12 84393408 84393454 -36864076 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1228 588 250 161 0 chr12 84393454 84393473 -36864057 + B3A SINE B2 178 197 -1 6 1228 831 286 61 17 chr12 84393484 84393715 -36863815 + B4A SINE B4 1 241 -51 6 1228 582 114 0 0 chr12 84393744 84393832 -36863698 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 1228 477 268 73 132 chr12 84393832 84394120 -36863410 + MLT1B LTR MaLR 118 388 -2 6 1228 252 0 0 0 chr12 84394339 84394367 -36863163 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1228 989 224 33 24 chr12 84394371 84394581 -36862949 + B3 SINE B2 1 212 -4 6 1228 256 329 5 3 chr12 84395691 84395794 -36861736 + MIR SINE MIR 71 167 -95 6 1228 299 304 73 15 chr12 84395991 84396128 -36861402 - MIR3 SINE MIR -48 160 16 6 1228 317 309 132 46 chr12 84397006 84397342 -36860188 - L1MD LINE L1 -2145 4001 3623 6 1228 393 22 0 0 chr12 84397684 84397730 -36859800 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 6 1228 228 62 0 0 chr12 84398024 84398044 -36859486 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1228 1188 68 0 0 chr12 84398044 84398191 -36859339 - B1_Mm SINE Alu 0 147 1 6 1228 228 62 0 0 chr12 84398191 84398202 -36859328 + (T)n Simple_repeat Simple_repeat 1 11 0 6 1228 2657 108 13 13 chr12 84398553 84398947 -36858583 + ORR1B1 LTR MaLR 1 394 0 6 1228 451 209 48 82 chr12 84399062 84399208 -36858322 + MER5A DNA MER1_type 7 147 -42 6 1228 301 304 84 45 chr12 84400117 84400272 -36857258 + L2b LINE L2 2986 3146 -229 6 1228 1629 196 78 50 chr12 84400812 84401112 -36856418 + ORR1D2 LTR MaLR 2 317 -53 6 1228 2573 153 145 14 chr12 84401112 84401629 -36855901 + RMER4B LTR ERVK 1 585 0 6 1228 1629 196 78 50 chr12 84401629 84401687 -36855843 + ORR1D2 LTR MaLR 318 370 0 6 1228 262 298 212 12 chr12 84402260 84402345 -36855185 + MER45R DNA Tip100 2 103 -1478 6 1228 441 0 0 0 chr12 84402353 84402402 -36855128 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1228 799 255 24 24 chr12 84402446 84402651 -36854879 - B4 SINE B4 -87 205 1 6 1228 423 197 182 1 chr12 84404221 84404325 -36853205 - MIRb SINE MIR -117 151 26 6 1228 217 132 0 0 chr12 84404682 84404720 -36852810 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1228 696 294 0 0 chr12 84405318 84405461 -36852069 - ID_B1 SINE B4 0 224 82 6 1228 340 305 42 0 chr12 84405766 84405861 -36851669 + MIRm SINE MIR 84 182 -94 6 1228 310 274 48 0 chr12 84406178 84406262 -36851268 - MIRb SINE MIR -160 108 21 6 1228 904 100 0 130 chr12 84406267 84406428 -36851102 - B1_Mus1 SINE Alu -8 140 1 6 1228 32 67 0 0 chr12 84406503 84406563 -36850967 + AT_rich Low_complexity Low_complexity 1 60 0 6 1228 439 201 14 0 chr12 84407034 84407178 -36850352 + CT-rich Low_complexity Low_complexity 1 146 0 6 1228 1300 232 19 19 chr12 84407179 84407442 -36850088 - B4 SINE B4 -21 271 9 6 1228 184 253 45 136 chr12 84407531 84407641 -36849889 - L3 LINE CR1 -393 4096 3997 6 1228 396 345 40 0 chr12 84407979 84408179 -36849351 + MIR SINE MIR 54 261 -1 6 1228 204 40 0 0 chr12 84408296 84408321 -36849209 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1228 326 291 145 0 chr12 84408678 84408795 -36848735 + Lx8 LINE L1 7133 7266 -207 6 1228 265 271 0 54 chr12 84408795 84408869 -36848661 + RMER15 LTR ERVL 403 472 -103 6 1229 320 301 42 74 chr12 84410498 84410816 -36846714 + MTEb LTR MaLR 58 377 -2 6 1229 327 297 166 7 chr12 84411015 84411154 -36846376 - Charlie13b DNA Charlie -210 302 142 6 1229 268 177 177 0 chr12 84411269 84411348 -36846182 + MIR SINE MIR 38 130 -78 6 1229 412 229 67 30 chr12 84412039 84412174 -36845356 + B4A SINE B4 3 142 -150 6 1229 693 231 77 74 chr12 84412174 84412511 -36845019 + RLTR15 LTR ERVK 1 338 -21 6 1229 195 348 20 74 chr12 84412826 84412975 -36844555 + MER5A DNA MER1_type 48 188 -1 6 1229 634 211 71 45 chr12 84414868 84415022 -36842508 + RSINE1 SINE B4 3 160 -5 6 1229 319 273 32 20 chr12 84416674 84416801 -36840729 - MIRb SINE MIR -98 164 37 6 1229 285 286 66 116 chr12 84416896 84417218 -36840312 + ORR1E LTR MaLR 76 374 0 6 1229 767 140 0 25 chr12 84418159 84418320 -36839210 + GA-rich Low_complexity Low_complexity 3 159 0 6 1229 538 157 8 17 chr12 84418400 84418517 -36839013 + CT-rich Low_complexity Low_complexity 3 118 0 6 1229 238 179 0 0 chr12 84419048 84419087 -36838443 + L2b LINE L2 3121 3159 -216 6 1229 221 83 28 0 chr12 84419114 84419150 -36838380 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 6 1229 1498 84 16 0 chr12 84420190 84420381 -36837149 - B2_Mm2 SINE B2 -1 194 1 6 1229 509 279 14 41 chr12 84420428 84420574 -36836956 + B1F2 SINE Alu 2 143 -6 6 1229 256 318 67 13 chr12 84420850 84421000 -36836530 - MIRc SINE MIR -27 241 84 6 1229 647 235 118 18 chr12 84421643 84421812 -36835718 + B3A SINE B2 3 188 -10 6 1229 389 306 33 66 chr12 84421831 84422013 -36835517 + Charlie1b DNA MER1_type 72 247 -276 6 1229 297 328 8 41 chr12 84422146 84422267 -36835263 + MER5A1 DNA MER1_type 37 153 -13 6 1229 224 159 23 0 chr12 84422312 84422356 -36835174 + (ATTG)n Simple_repeat Simple_repeat 3 47 0 6 1229 380 265 37 64 chr12 84422545 84422654 -36834876 - MIRb SINE MIR -106 162 57 6 1229 246 222 44 73 chr12 84422736 84422804 -36834726 - MER5A1 DNA MER1_type -57 109 44 6 1229 266 50 25 0 chr12 84423251 84423291 -36834239 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1229 323 298 50 50 chr12 84423377 84423575 -36833955 - MER33 DNA MER1_type -67 257 60 6 1229 405 0 0 0 chr12 84423940 84423985 -36833545 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1229 462 18 0 0 chr12 84423985 84424040 -36833490 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1229 258 56 0 0 chr12 84424068 84424104 -36833426 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1229 295 296 49 0 chr12 84424300 84424381 -36833149 - Tigger7 DNA MER2_type -15 2476 2392 6 1229 1405 266 82 13 chr12 84424360 84424752 -36832778 - Tigger7 DNA MER2_type -1878 613 195 6 1229 277 268 206 0 chr12 84426531 84426628 -36830902 + B1_Mus1 SINE Alu 1 117 -31 6 1229 365 234 198 21 chr12 84426541 84426637 -36830893 + ID_B1 SINE B4 91 203 -21 6 1229 198 143 0 0 chr12 84426698 84426733 -36830797 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 6 1229 227 320 50 37 chr12 84426735 84426941 -36830589 - MIRm SINE MIR 0 268 62 6 1229 1295 238 98 30 chr12 84428059 84428263 -36829267 + ORR1D1 LTR MaLR 14 244 -130 6 1229 189 0 0 0 chr12 84428263 84428284 -36829246 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 6 1229 1295 238 98 30 chr12 84428284 84428417 -36829113 + ORR1D1 LTR MaLR 245 374 0 6 1229 23 0 0 0 chr12 84428831 84428854 -36828676 + AT_rich Low_complexity Low_complexity 1 23 0 6 1229 216 0 0 0 chr12 84429323 84429347 -36828183 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 6 1229 347 320 97 56 chr12 84429347 84429635 -36827895 + L2 LINE L2 2741 3040 -379 6 1229 215 368 57 6 chr12 84430748 84430923 -36826607 - L2a LINE L2 -9 3417 3234 6 1229 626 280 142 20 chr12 84431096 84431552 -36825978 + L1MC1 LINE L1 5792 6303 -30 6 1229 342 0 0 0 chr12 84432068 84432106 -36825424 + (TGG)n Simple_repeat Simple_repeat 1 38 0 6 1229 25 51 0 0 chr12 84432218 84432257 -36825273 + AT_rich Low_complexity Low_complexity 1 39 0 6 1229 219 299 78 36 chr12 84433191 84433379 -36824151 + MIR SINE MIR 5 192 -76 6 1229 1213 112 26 11 chr12 84434130 84434320 -36823210 + B2_Mm1t SINE B2 1 193 0 6 1229 324 48 0 0 chr12 84434392 84434434 -36823096 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1229 260 344 57 108 chr12 84434647 84434823 -36822707 - LTR33 LTR ERVL -308 207 41 6 1229 1160 40 0 13 chr12 84435031 84435182 -36822348 + (GGGAGA)n Simple_repeat Simple_repeat 3 151 0 6 1229 702 272 38 0 chr12 84435222 84435380 -36822150 + RSINE1 SINE B4 1 164 -1 6 1229 189 0 0 0 chr12 84435387 84435408 -36822122 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1229 342 0 0 0 chr12 84435695 84435733 -36821797 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1229 294 232 188 60 chr12 84435733 84435866 -36821664 - L3b LINE CR1 -198 284 135 7 1229 284 365 67 1 chr12 84436189 84436361 -36821169 - MIRb SINE MIR -78 190 1 7 1229 712 247 93 56 chr12 84437292 84437606 -36819924 - MER33 DNA MER1_type -8 316 1 7 1229 663 234 39 53 chr12 84439796 84440031 -36817499 + L1MA9 LINE L1 6021 6250 -50 7 1229 307 269 0 0 chr12 84440031 84440098 -36817432 + ID4 SINE ID 3 69 -14 7 1229 299 281 21 131 chr12 84440098 84440143 -36817387 + L1MA9 LINE L1 6251 6285 -15 7 1229 197 143 48 0 chr12 84440144 84440186 -36817344 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 7 1229 781 238 155 0 chr12 84440368 84440549 -36816981 + ID_B1 SINE B4 3 211 -13 7 1229 226 333 50 17 chr12 84440643 84440762 -36816768 + MIRb SINE MIR 124 246 -22 7 1229 334 307 68 77 chr12 84441063 84441285 -36816245 - L2a LINE L2 -1 3425 3206 7 1229 301 332 145 4 chr12 84441436 84441678 -36815852 - L2a LINE L2 -426 2993 2718 7 1229 246 356 45 15 chr12 84442362 84442496 -36815034 - MIRc SINE MIR -110 158 21 7 1229 310 304 76 0 chr12 84442664 84442756 -36814774 - L2b LINE L2 -5 3370 3272 7 1229 182 245 115 16 chr12 84444274 84444364 -36813166 + MIRc SINE MIR 93 184 -92 7 1229 446 284 35 47 chr12 84444373 84444461 -36813069 + ID_B1 SINE B4 1 208 -16 7 1229 751 171 8 0 chr12 84444461 84444584 -36812946 + B1_Mur2 SINE Alu 10 133 -16 7 1229 3309 53 2 2 chr12 84444584 84444984 -36812546 + MTB LTR MaLR 1 400 0 7 1229 863 87 8 0 chr12 84444994 84445120 -36812410 + (GAAA)n Simple_repeat Simple_repeat 3 129 0 7 1229 401 129 0 14 chr12 84445139 84445210 -36812320 + (GGGA)n Simple_repeat Simple_repeat 2 71 0 7 1229 2658 41 18 0 chr12 84446233 84446573 -36810957 - MusHAL1 LINE L1 -2012 700 355 7 1229 359 264 7 0 chr12 84446708 84446848 -36810682 + (CA)n Simple_repeat Simple_repeat 2 142 0 7 1229 547 243 6 11 chr12 84446823 84447002 -36810528 + (CATA)n Simple_repeat Simple_repeat 1 178 0 7 1229 419 211 15 0 chr12 84447433 84447518 -36810012 + B4 SINE B4 6 92 -200 7 1229 7140 55 36 69 chr12 84447525 84448539 -36808991 + L1_Mus4 LINE L1 5644 6624 -12 7 1229 699 296 66 0 chr12 84448567 84448763 -36808767 + B4 SINE B4 83 291 -1 7 1229 200 204 23 0 chr12 84448765 84448809 -36808721 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1229 353 22 0 21 chr12 84449682 84449729 -36807801 + (CCCCAG)n Simple_repeat Simple_repeat 3 48 0 7 1229 217 337 124 17 chr12 84450190 84450368 -36807162 + MIR3 SINE MIR 9 205 -3 7 1229 771 191 15 7 chr12 84450393 84450530 -36807000 - B1_Mur2 SINE Alu 0 149 12 7 1229 310 259 48 36 chr12 84450581 84450665 -36806865 - B1F SINE Alu -1 148 64 7 1229 269 358 24 29 chr12 84450749 84450919 -36806611 + MER33 DNA MER1_type 22 190 -134 7 1229 203 345 33 25 chr12 84451920 84452042 -36805488 - MIR3 SINE MIR -27 181 59 7 1229 998 225 41 83 chr12 84452115 84452454 -36805076 + RLTR15 LTR ERVK 3 327 -32 7 1229 483 33 0 0 chr12 84453030 84453091 -36804439 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1229 925 275 76 34 chr12 84453112 84453376 -36804154 + B4A SINE B4 8 282 -10 7 1229 270 207 0 0 chr12 84453393 84453451 -36804079 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1229 333 262 25 0 chr12 84454571 84454651 -36802879 + ID4_ SINE ID 2 83 0 7 1229 656 206 0 58 chr12 84457684 84457823 -36799707 + B1_Mur1 SINE Alu 2 132 -17 7 1229 534 112 40 40 chr12 84457838 84457987 -36799543 + GA-rich Low_complexity Low_complexity 4 152 0 7 1229 9405 81 3 2 chr12 84457998 84460016 -36797514 + L1_Mus1 LINE L1 4551 6567 0 7 1229 226 302 49 59 chr12 84460056 84460158 -36797372 - L3 LINE CR1 -32 4457 4357 7 1229 261 0 0 0 chr12 84460244 84460273 -36797257 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1229 219 230 67 160 chr12 84460384 84460503 -36797027 + PB1D7 SINE Alu 5 112 -8 7 1229 984 259 0 26 chr12 84460515 84460745 -36796785 + ID_B1 SINE B4 1 224 0 7 1229 496 269 84 104 chr12 84460757 84460964 -36796566 + L1M4 LINE L1 3177 3388 -2758 7 1229 583 264 12 49 chr12 84460964 84461127 -36796403 - RSINE1 SINE B4 -7 158 2 7 1229 581 269 56 48 chr12 84461127 84461478 -36796052 + L1M4 LINE L1 3389 3725 -2421 7 1229 1056 79 0 7 chr12 84461508 84461649 -36795881 - BGLII LTR ERVK 0 421 282 7 1229 677 87 58 7 chr12 84461650 84461789 -36795741 + BGLII LTR ERVK 172 317 -104 7 1229 327 326 58 0 chr12 84461991 84462077 -36795453 + L1M4 LINE L1 4618 4708 -1438 7 1229 198 0 0 0 chr12 84462090 84462112 -36795418 + (TTG)n Simple_repeat Simple_repeat 3 24 0 7 1229 509 284 14 36 chr12 84462114 84462253 -36795277 - B1_Mur1 SINE Alu -13 136 1 7 1229 374 296 88 15 chr12 84462298 84462692 -36794838 + L1M4 LINE L1 4781 5219 -927 7 1229 312 27 0 0 chr12 84462692 84462729 -36794801 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1229 732 204 0 7 chr12 84463418 84463566 -36793964 + B1_Mus1 SINE Alu 1 147 -1 7 1229 214 167 33 0 chr12 84463567 84463627 -36793903 + GA-rich Low_complexity Low_complexity 3 64 0 7 1229 585 264 76 38 chr12 84463649 84463885 -36793645 - Lx7 LINE L1 -394 7302 7058 7 1229 253 311 0 13 chr12 84463877 84463952 -36793578 - Lx6 LINE L1 -592 6868 6795 7 1229 754 338 65 20 chr12 84464083 84464436 -36793094 + MER21B LTR ERV1 468 836 -27 7 1229 887 305 71 45 chr12 84464446 84464984 -36792546 + L1ME1 LINE L1 5368 5919 -260 7 1229 853 125 23 0 chr12 84465142 84465270 -36792260 - B1_Mur4 SINE Alu -17 133 3 7 1229 1167 201 63 33 chr12 84465272 84465413 -36792117 + Lx7 LINE L1 7352 7495 -201 7 1229 222 37 0 0 chr12 84465413 84465440 -36792090 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 7 1229 1167 201 63 33 chr12 84465440 84465633 -36791897 + Lx7 LINE L1 7496 7695 -1 7 1229 533 291 115 104 chr12 84465626 84465855 -36791675 + L1MEf LINE L1 1238 1475 -5158 7 1229 707 221 36 76 chr12 84465855 84466080 -36791450 + B3 SINE B2 1 216 0 7 1229 646 291 115 104 chr12 84466080 84466570 -36790960 + L1MEf LINE L1 1476 1965 -4668 7 1229 824 114 0 8 chr12 84517504 84517636 -36739894 + (GGAA)n Simple_repeat Simple_repeat 4 134 0 1 1229 234 0 0 0 chr12 84519801 84519827 -36737703 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1229 492 254 15 102 chr12 84520175 84520372 -36737158 + AmnSINE1 SINE SINE 369 548 -27 3 1229 225 94 0 0 chr12 84520392 84520424 -36737106 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 4 1229 861 10 0 0 chr12 84523229 84523327 -36734203 + (TC)n Simple_repeat Simple_repeat 1 98 0 5 1229 216 0 0 0 chr12 84523327 84523350 -36734180 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1229 376 213 100 24 chr12 84523353 84523528 -36734002 - L1ME2 LINE L1 -264 6180 5981 7 1229 970 218 117 31 chr12 84525896 84526152 -36731378 + B4 SINE B4 2 279 -13 8 1229 294 98 0 0 chr12 84526166 84526217 -36731313 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 9 1229 333 0 0 0 chr12 84526351 84526388 -36731142 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1229 293 324 9 26 chr12 84526847 84526961 -36730569 - MamSINE1 SINE tRNA -2 288 177 1 1229 930 93 0 0 chr12 84529439 84529578 -36727952 + (GGAA)n Simple_repeat Simple_repeat 2 140 0 1 1229 204 40 0 0 chr12 84530816 84530841 -36726689 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1 1229 1279 188 14 35 chr12 84532952 84533238 -36724292 - BGLII_A LTR ERVK -3 442 163 1 1229 1028 221 57 15 chr12 84533210 84533472 -36724058 - BGLII_A LTR ERVK -168 277 5 1 1229 1011 159 0 0 chr12 84534841 84535140 -36722390 + (TG)n Simple_repeat Simple_repeat 1 299 0 1 1229 818 256 74 0 chr12 84535156 84535426 -36722104 - L1ME1 LINE L1 -15 6164 5875 1 1229 414 0 0 0 chr12 84536368 84536414 -36721116 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1229 210 207 0 0 chr12 84536607 84536665 -36720865 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1229 1191 93 0 0 chr12 84536844 84537005 -36720525 + B2_Mm2 SINE B2 1 161 -34 1 1229 180 0 0 0 chr12 84537006 84537026 -36720504 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1229 1749 291 68 69 chr12 84537161 84538613 -36718917 + L1MB7 LINE L1 4730 6175 -9 2 1229 352 176 0 75 chr12 84538670 84538750 -36718780 + HAL1-3A_ME LINE L1 1978 2051 -807 2 1229 423 56 0 0 chr12 84539571 84539625 -36717905 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1229 1061 266 16 112 chr12 84540363 84540676 -36716854 + B4 SINE B4 2 284 -8 2 1229 267 31 0 0 chr12 84540683 84540715 -36716815 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1230 796 185 14 22 chr12 84543179 84543317 -36714213 + B3A SINE B2 3 139 -59 2 1230 207 0 0 0 chr12 84543322 84543345 -36714185 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1230 7799 101 23 3 chr12 84543373 84545228 -36712302 - L1_Mus4 LINE L1 -7 6629 4724 2 1230 698 213 14 41 chr12 84545242 84545389 -36712141 + B1_Mur2 SINE Alu 1 143 -6 2 1230 268 288 69 99 chr12 84546809 84546940 -36710590 - L2c LINE L2 -1 3386 3260 3 1230 417 206 35 46 chr12 84547710 84547883 -36709647 + (TG)n Simple_repeat Simple_repeat 2 172 0 3 1230 1142 230 17 30 chr12 84547895 84548191 -36709339 - B4A SINE B4 0 292 1 3 1230 1728 292 49 21 chr12 84550081 84550305 -36707225 + MLT2B3 LTR ERVL 1 220 -334 3 1230 576 0 0 0 chr12 84550305 84550369 -36707161 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1230 1728 292 49 21 chr12 84550369 84550655 -36706875 + MLT2B3 LTR ERVL 221 525 -29 3 1230 361 323 137 49 chr12 84551290 84551596 -36705934 - L2a LINE L2 -17 3409 3077 3 1230 1336 95 21 0 chr12 84552064 84552253 -36705277 - B2_Mm2 SINE B2 -1 194 2 3 1230 1225 266 83 29 chr12 84552370 84552815 -36704715 - Lx8 LINE L1 -2 7471 7003 3 1230 345 309 77 67 chr12 84552985 84553179 -36704351 - LTR16A LTR ERVL -10 441 246 3 1230 756 99 0 0 chr12 84553535 84553646 -36703884 + (TC)n Simple_repeat Simple_repeat 2 112 0 3 1230 239 198 168 50 chr12 84553646 84553747 -36703783 - PB1D10 SINE Alu 0 117 5 4 1230 185 0 40 0 chr12 84554064 84554089 -36703441 + (CCA)n Simple_repeat Simple_repeat 2 27 0 4 1230 303 306 0 0 chr12 84554167 84554275 -36703255 + L1M5 LINE L1 5324 5431 -693 4 1230 423 0 0 0 chr12 84554308 84554355 -36703175 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1230 763 221 52 11 chr12 84554644 84554818 -36702712 + B3A SINE B2 2 182 -16 4 1230 506 207 0 6 chr12 84554837 84555017 -36702513 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1230 223 227 30 0 chr12 84555017 84555083 -36702447 + (CATA)n Simple_repeat Simple_repeat 3 70 0 4 1230 326 362 61 39 chr12 84555129 84555359 -36702171 + HAL1 LINE L1 1276 1510 -997 4 1230 227 232 70 28 chr12 84555364 84555435 -36702095 + L1MEe LINE L1 170 243 -4611 4 1230 913 220 5 73 chr12 84556361 84556567 -36700963 + B3A SINE B2 1 192 -6 4 1230 265 392 45 81 chr12 84557994 84558216 -36699314 + LTR78 LTR ERV1 87 300 -1004 5 1230 1007 256 165 18 chr12 84558551 84558878 -36698652 + MTEa LTR MaLR 5 379 0 5 1230 553 271 74 27 chr12 84559061 84559209 -36698321 + RSINE1 SINE B4 11 165 0 5 1230 260 53 26 0 chr12 84559221 84559259 -36698271 + (AATTG)n Simple_repeat Simple_repeat 2 40 0 5 1230 188 35 35 0 chr12 84559338 84559367 -36698163 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 1230 593 310 41 20 chr12 84559367 84559611 -36697919 + LTR78 LTR ERV1 1054 1302 -2 5 1230 374 184 45 35 chr12 84562031 84562138 -36695392 - B1_Mus2 SINE Alu -8 141 23 5 1230 273 250 35 138 chr12 84562058 84562171 -36695359 - MT2B LTR ERVL -346 255 155 5 1230 506 318 86 47 chr12 84562171 84562618 -36694912 - MLT1D LTR MaLR -2 625 17 5 1230 600 246 60 0 chr12 84562786 84562920 -36694610 + MTE2b LTR MaLR 22 163 -216 5 1230 760 270 44 24 chr12 84563312 84563517 -36694013 + B3 SINE B2 2 210 -6 6 1230 928 206 33 42 chr12 84563533 84563746 -36693784 + MTE2b LTR MaLR 169 379 0 5 1230 324 326 55 9 chr12 84563906 84564045 -36693485 + MIR SINE MIR 44 191 -77 6 1230 240 327 70 58 chr12 84564219 84564391 -36693139 + MLT1M LTR MaLR 95 268 -404 6 1230 342 0 0 0 chr12 84565839 84565877 -36691653 + (TTGG)n Simple_repeat Simple_repeat 1 38 0 6 1230 1272 89 0 0 chr12 84565877 84566057 -36691473 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 6 1230 629 128 9 0 chr12 84566063 84566143 -36691387 + (TTGG)n Simple_repeat Simple_repeat 3 82 0 6 1230 1155 107 0 0 chr12 84566143 84566321 -36691209 + (GCTG)n Simple_repeat Simple_repeat 1 178 0 6 1230 629 128 9 0 chr12 84566321 84566349 -36691181 + (TTGG)n Simple_repeat Simple_repeat 2 30 0 6 1230 993 139 0 0 chr12 84566354 84566527 -36691003 + (GCTG)n Simple_repeat Simple_repeat 3 175 0 6 1230 954 127 0 0 chr12 84566539 84566697 -36690833 + (TTGG)n Simple_repeat Simple_repeat 1 158 0 6 1230 522 119 0 0 chr12 84566702 84566786 -36690744 + (GCTG)n Simple_repeat Simple_repeat 4 87 0 7 1230 234 0 0 0 chr12 84567628 84567654 -36689876 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1230 393 22 0 0 chr12 84567654 84567699 -36689831 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1230 631 237 59 7 chr12 84568440 84568576 -36688954 + RSINE1 SINE B4 4 146 -19 7 1230 273 57 0 0 chr12 84568585 84568620 -36688910 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1230 917 98 7 22 chr12 84569568 84569704 -36687826 - B1_Mur4 SINE Alu -16 134 1 7 1230 291 145 0 0 chr12 84570218 84570287 -36687243 + (A)n Simple_repeat Simple_repeat 1 69 0 7 1230 183 80 0 0 chr12 84571817 84571842 -36685688 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 7 1230 369 0 0 0 chr12 84572427 84572468 -36685062 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1230 1470 138 4 9 chr12 84573188 84573414 -36684116 - URR1B DNA MER1_type 0 225 1 7 1230 486 0 0 0 chr12 84573524 84573578 -36683952 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1230 246 189 198 26 chr12 84573579 84573685 -36683845 - MLT1A0 LTR MaLR -38 352 231 8 1230 366 23 0 0 chr12 84574284 84574327 -36683203 + (TGG)n Simple_repeat Simple_repeat 1 43 0 8 1230 645 14 0 0 chr12 84574328 84574402 -36683128 + (TC)n Simple_repeat Simple_repeat 1 74 0 8 1230 756 80 0 0 chr12 84575023 84575136 -36682394 + (TG)n Simple_repeat Simple_repeat 1 113 0 8 1230 198 71 0 0 chr12 84577487 84577515 -36680015 + (G)n Simple_repeat Simple_repeat 1 28 0 8 1230 217 385 0 0 chr12 84578763 84578841 -36678689 + G-rich Low_complexity Low_complexity 5 82 0 8 1230 700 200 12 0 chr12 84579186 84579356 -36678174 + (CA)n Simple_repeat Simple_repeat 1 172 0 8 1230 522 75 0 0 chr12 84580046 84580126 -36677404 + (TG)n Simple_repeat Simple_repeat 2 81 0 8 1230 432 0 0 0 chr12 84580126 84580174 -36677356 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 1230 845 19 10 0 chr12 84581957 84582060 -36675470 + (TC)n Simple_repeat Simple_repeat 1 104 0 9 1230 405 0 0 0 chr12 84582061 84582106 -36675424 + (TCCCC)n Simple_repeat Simple_repeat 1 45 0 9 1230 252 0 0 0 chr12 84582385 84582413 -36675117 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 9 1230 196 278 0 0 chr12 84582684 84582738 -36674792 - MIRc SINE MIR -142 126 73 9 1230 362 38 0 19 chr12 84582812 84582865 -36674665 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1230 448 316 19 32 chr12 84583175 84583332 -36674198 - MIRc SINE MIR -90 178 24 9 1230 205 295 40 111 chr12 84583800 84583926 -36673604 - L3 LINE CR1 -2287 2202 2086 9 1230 319 262 88 51 chr12 84586215 84586352 -36671178 + MIR SINE MIR 113 254 -8 9 1230 2560 110 42 30 chr12 84586668 84587070 -36670460 - MTB_Mm LTR MaLR 0 407 1 9 1230 240 273 51 25 chr12 84588890 84588969 -36668561 - PB1D10 SINE Alu -1 116 36 9 1230 270 106 0 0 chr12 84589005 84589052 -36668478 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1230 339 243 127 91 chr12 84589414 84589667 -36667863 + L1MC5 LINE L1 6778 7039 -922 1 1230 347 359 98 5 chr12 84589628 84589852 -36667678 - L1MC4a LINE L1 -2 7880 7636 1 1230 822 248 29 10 chr12 84590010 84590214 -36667316 - ID_B1 SINE B4 -12 212 5 1 1230 313 173 147 0 chr12 84590215 84590290 -36667240 - L1MC4a LINE L1 -258 7624 7539 1 1230 459 346 109 49 chr12 84590298 84590914 -36666616 - Lx8 LINE L1 -1 7472 6820 1 1230 844 271 100 65 chr12 84591057 84591629 -36665901 - L1MC4a LINE L1 -569 7313 6722 1 1230 263 318 7 83 chr12 84591870 84592014 -36665516 + MLT1A1 LTR MaLR 272 404 -4 1 1230 332 365 82 18 chr12 84592014 84592124 -36665406 - L1MC4a LINE L1 -1306 6689 6572 1 1230 387 0 0 0 chr12 84592124 84592167 -36665363 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1230 332 365 82 18 chr12 84592167 84592226 -36665304 - L1MC4a LINE L1 -1424 6571 6509 1 1230 2300 189 32 42 chr12 84592252 84592777 -36664753 - Lx5 LINE L1 -3 7047 6528 1 1230 595 292 92 4 chr12 84592807 84593058 -36664472 - L1MC4a LINE L1 -1412 6470 6198 1 1230 742 320 146 20 chr12 84593229 84593879 -36663651 - L1MC4a LINE L1 -1890 5992 5261 1 1230 605 313 44 30 chr12 84593966 84594339 -36663191 - L1MC4a LINE L1 -989 5157 4765 1 1230 22 0 0 0 chr12 84594345 84594367 -36663163 + GC_rich Low_complexity Low_complexity 1 22 0 1 1230 941 274 5 15 chr12 84594432 84594632 -36662898 - ID_B1 SINE B4 -2 222 25 1 1230 355 347 45 11 chr12 84594676 84594854 -36662676 - L1MC4a LINE L1 -1459 4687 4504 1 1230 764 263 20 31 chr12 84594929 84595125 -36662405 - B3A SINE B2 -4 194 1 1 1230 1053 258 7 71 chr12 84595480 84595789 -36661741 + B4A SINE B4 4 292 0 1 1230 568 193 35 0 chr12 84599234 84599348 -36658182 + PB1D9 SINE Alu 3 120 0 1 1230 279 0 0 0 chr12 84599348 84599379 -36658151 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1230 200 236 36 0 chr12 84599398 84599453 -36658077 + GA-rich Low_complexity Low_complexity 1 57 0 1 1230 390 245 100 36 chr12 84599506 84599616 -36657914 + PB1D10 SINE Alu 1 117 0 1 1230 266 214 0 0 chr12 84599770 84599812 -36657718 + 5S rRNA rRNA 1 42 -79 1 1230 431 254 22 87 chr12 84600032 84600170 -36657360 + RMER30 DNA MER1_type 2 130 -72 1 1230 1207 163 24 9 chr12 84600709 84600920 -36656610 - B3 SINE B2 0 216 3 1 1230 281 333 21 0 chr12 84601033 84601126 -36656404 + BC1_Mm scRNA scRNA 3 97 -55 1 1230 212 143 0 23 chr12 84601129 84601172 -36656358 + GA-rich Low_complexity Low_complexity 5 46 0 1 1230 624 280 16 52 chr12 84602450 84602542 -36654988 + B4A SINE B4 1 84 -208 1 1230 273 89 0 0 chr12 84602542 84602587 -36654943 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 1230 624 280 16 52 chr12 84602587 84602686 -36654844 + B4A SINE B4 85 185 -107 1 1230 180 111 0 0 chr12 84602752 84602779 -36654751 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1230 235 235 284 33 chr12 84603220 84603431 -36654099 + Lx8 LINE L1 7208 7471 -2 1 1230 193 321 34 56 chr12 84604306 84604395 -36653135 - L2a LINE L2 0 3426 3340 1 1230 185 341 57 0 chr12 84605692 84605780 -36651750 - L2c LINE L2 -5 3421 3329 1 1230 780 338 78 31 chr12 84605806 84606163 -36651367 + MLT1F2 LTR MaLR 1 374 -186 1 1230 263 342 62 72 chr12 84606202 84606410 -36651120 - L2c LINE L2 -133 3254 3049 1 1230 207 289 157 49 chr12 84606729 84606933 -36650597 - L2c LINE L2 -691 2728 2503 1 1230 304 245 30 69 chr12 84607478 84607499 -36650031 + B4 SINE B4 70 86 -206 1 1230 559 205 14 93 chr12 84607499 84607639 -36649891 + B1_Mur4 SINE Alu 1 129 -21 1 1230 510 74 101 0 chr12 84607650 84607799 -36649731 + GA-rich Low_complexity Low_complexity 2 165 0 1 1230 811 30 85 0 chr12 84607799 84607963 -36649567 + (GA)n Simple_repeat Simple_repeat 1 178 0 1 1230 639 303 180 50 chr12 84608548 84608743 -36648787 + MLT1F2 LTR MaLR 4 211 -349 1 1230 270 106 0 0 chr12 84608743 84608790 -36648740 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1230 639 312 167 35 chr12 84608790 84609094 -36648436 + MLT1F2 LTR MaLR 212 559 -1 1 1230 651 249 90 6 chr12 84609172 84609338 -36648192 + B3A SINE B2 3 182 -16 1 1230 958 199 109 5 chr12 84609529 84609721 -36647809 + B3 SINE B2 2 213 -3 1 1230 570 275 0 0 chr12 84610135 84610255 -36647275 - PB1D9 SINE Alu 0 120 1 1 1230 861 184 60 86 chr12 84610557 84610789 -36646741 - Lx5 LINE L1 -1 7049 6824 1 1230 1708 102 0 4 chr12 84610788 84611034 -36646496 + Lx4B LINE L1 6505 6749 -309 1 1230 182 37 37 0 chr12 84611036 84611063 -36646467 + (CACCC)n Simple_repeat Simple_repeat 5 32 0 1 1230 390 359 25 50 chr12 84612697 84612899 -36644631 - MER117 DNA MER1_type 0 197 1 1 1230 336 48 0 0 chr12 84613696 84613738 -36643792 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1230 1038 164 76 11 chr12 84615233 84615418 -36642112 + B3 SINE B2 15 211 -5 1 1230 4110 42 0 0 chr12 84615753 84616234 -36641296 + L1Md_T LINE L1 6101 6581 -1 1 1230 212 330 75 21 chr12 84616254 84616347 -36641183 + L2 LINE L2 1489 1586 -1833 1 1230 1140 144 118 15 chr12 84616999 84617203 -36640327 + URR1A DNA MER1_type 1 225 -1 1 1230 576 213 314 0 chr12 84617281 84617450 -36640080 - ID_B1 SINE B4 -2 222 1 1 1230 227 226 176 12 chr12 84617579 84617664 -36639866 - MIRb SINE MIR -13 249 151 1 1230 251 369 27 0 chr12 84618635 84618784 -36638746 - MIR3 SINE MIR -19 189 37 1 1230 452 278 0 9 chr12 84619602 84619711 -36637819 - B3A SINE B2 -57 141 34 1 1230 717 253 15 24 chr12 84620257 84620446 -36637084 + B3A SINE B2 10 211 -5 1 1230 873 149 68 57 chr12 84620449 84620641 -36636889 + B2_Mm2 SINE B2 1 194 -1 1 1230 198 0 0 0 chr12 84621690 84621712 -36635818 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1230 333 68 0 0 chr12 84621739 84621783 -36635747 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 1 1230 1192 131 23 0 chr12 84621952 84622128 -36635402 + B2_Mm2 SINE B2 2 181 -14 1 1230 323 101 20 32 chr12 84622194 84622293 -36635237 + B2_Mm2 SINE B2 47 180 -15 1 1230 795 97 0 0 chr12 84622293 84622407 -36635123 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 1 1230 221 306 293 6 chr12 84623514 84623688 -36633842 - L3b LINE CR1 -186 296 73 1 1230 225 273 0 0 chr12 84623967 84624011 -36633519 + B1F2 SINE Alu 1 44 -105 1 1230 301 294 0 14 chr12 84624021 84624090 -36633440 + ID4 SINE ID 16 83 0 1 1230 243 293 180 49 chr12 84624090 84624143 -36633387 + ID_B1 SINE B4 16 153 -71 1 1230 232 265 72 14 chr12 84624101 84624170 -36633360 + PB1D10 SINE Alu 32 104 -13 1 1230 216 0 0 0 chr12 84624604 84624628 -36632902 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1230 444 264 166 20 chr12 84625419 84625570 -36631960 + MER58A DNA MER1_type 42 214 -10 1 1230 201 94 0 0 chr12 84625802 84625834 -36631696 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1230 238 226 38 0 chr12 84626380 84626446 -36631084 + MER102c DNA MER1_type 68 142 -189 1 1230 929 209 233 4 chr12 84626446 84626682 -36630848 + B4A SINE B4 3 292 0 1 1230 301 238 24 6 chr12 84626682 84626847 -36630683 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 1230 949 259 69 92 chr12 84627655 84628077 -36629453 + L1MB3 LINE L1 5741 6152 -31 1 1230 790 233 69 69 chr12 84628103 84628393 -36629137 + B4A SINE B4 1 290 -2 1 1230 207 0 0 0 chr12 84630269 84630292 -36627238 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1230 213 39 0 0 chr12 84630730 84630756 -36626774 + (AGCTG)n Simple_repeat Simple_repeat 4 29 0 1 1230 195 42 0 0 chr12 84630836 84630860 -36626670 + (GGA)n Simple_repeat Simple_repeat 2 25 0 1 1230 258 32 0 0 chr12 84632352 84632383 -36625147 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1230 351 0 0 0 chr12 84632653 84632692 -36624838 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1230 181 226 31 46 chr12 84632884 84632949 -36624581 - L2c LINE L2 -82 3305 3242 1 1230 618 300 43 32 chr12 84633431 84633713 -36623817 + L1MC4 LINE L1 7382 7666 -376 1 1230 263 224 195 17 chr12 84633732 84633850 -36623680 + L1MC4 LINE L1 7696 7834 -48 1 1230 350 356 140 45 chr12 84634012 84634277 -36623253 - B4 SINE B4 -2 290 1 1 1230 1041 145 120 39 chr12 84634604 84634812 -36622718 - URR1A DNA MER1_type 0 226 2 1 1230 23 0 0 0 chr12 84635337 84635360 -36622170 + AT_rich Low_complexity Low_complexity 1 23 0 1 1230 429 311 102 31 chr12 84636253 84636449 -36621081 + MIR SINE MIR 23 232 -30 1 1230 746 288 0 0 chr12 84637761 84637924 -36619606 - RSINE1 SINE B4 0 165 3 1 1230 225 214 0 0 chr12 84638301 84638343 -36619187 + A-rich Low_complexity Low_complexity 1 42 0 1 1230 419 0 20 0 chr12 84638992 84639043 -36618487 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1230 21 36 0 0 chr12 84639055 84639083 -36618447 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 442 274 61 23 chr12 84644614 84644745 -36612785 + ID_B1 SINE B4 81 216 -8 1 1230 231 323 0 0 chr12 84644768 84644830 -36612700 + ID4 SINE ID 2 63 -20 1 1230 1095 94 0 0 chr12 84645454 84645592 -36611938 - B1_Mus2 SINE Alu -9 138 1 1 1230 240 203 34 0 chr12 84645989 84646048 -36611482 + MTEa LTR MaLR 75 135 -224 1 1230 280 315 34 0 chr12 84646170 84646259 -36611271 + MTEa LTR MaLR 288 379 0 1 1230 305 321 117 0 chr12 84648932 84649069 -36608461 + L3b LINE CR1 95 247 -235 1 1230 323 239 45 50 chr12 84649319 84649448 -36608082 + L2c LINE L2 3233 3366 -9 1 1230 891 249 73 9 chr12 84649786 84650005 -36607525 + B4 SINE B4 1 233 -59 1 1230 375 305 73 89 chr12 84650126 84650385 -36607145 - ORR1E LTR MaLR -96 263 9 1 1230 760 258 19 12 chr12 84650754 84650915 -36606615 + RSINE1 SINE B4 2 163 -2 1 1230 737 149 101 4 chr12 84651254 84651431 -36606099 + B3 SINE B2 3 188 -7 1 1230 903 262 62 68 chr12 84651881 84652217 -36605313 + MLT1A LTR MaLR 25 358 -16 1 1230 1212 246 155 18 chr12 84652219 84652570 -36604960 + MTD LTR MaLR 3 405 -14 1 1230 2092 185 32 15 chr12 84652570 84652982 -36604548 + MTD LTR MaLR 1 419 0 1 1230 443 288 22 45 chr12 84653170 84653348 -36604182 + MIRb SINE MIR 48 221 -47 1 1230 207 270 66 26 chr12 84653541 84653617 -36603913 + MIR SINE MIR 152 230 -32 1 1230 197 324 75 45 chr12 84654203 84654436 -36603094 - MIR SINE MIR -19 243 13 2 1230 30 45 0 0 chr12 84655217 84655261 -36602269 + AT_rich Low_complexity Low_complexity 1 44 0 2 1230 394 236 7 7 chr12 84655874 84656019 -36601511 + (TGGA)n Simple_repeat Simple_repeat 2 146 0 2 1230 1195 49 0 14 chr12 84656083 84656229 -36601301 - B1_Mus1 SINE Alu -2 146 3 2 1230 3479 23 8 2 chr12 84657944 84658338 -36599192 - MTA_Mm LTR MaLR 0 396 1 2 1230 7893 72 6 69 chr12 84658338 84659510 -36598020 - MTA_Mm-int LTR MaLR 0 1098 1 2 1230 3352 33 10 2 chr12 84659510 84659903 -36597627 - MTA_Mm LTR MaLR 0 396 1 2 1230 7936 72 6 67 chr12 84659903 84661072 -36596458 - MTA_Mm-int LTR MaLR 0 1098 1 2 1230 3360 43 2 2 chr12 84661072 84661468 -36596062 - MTA_Mm LTR MaLR 0 396 1 2 1230 308 284 58 80 chr12 84662240 84662331 -36595199 + MLT1B LTR MaLR 16 103 -287 2 1230 581 250 161 0 chr12 84662331 84662479 -36595051 + B3A SINE B2 4 177 -21 2 1230 372 43 0 0 chr12 84662479 84662525 -36595005 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1230 581 250 161 0 chr12 84662525 84662544 -36594986 + B3A SINE B2 178 197 -1 2 1230 825 286 61 17 chr12 84662555 84662786 -36594744 + B4A SINE B4 1 241 -51 2 1230 540 136 0 0 chr12 84662815 84662903 -36594627 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 1230 478 268 73 132 chr12 84662903 84663191 -36594339 + MLT1B LTR MaLR 118 388 -2 2 1230 252 0 0 0 chr12 84663410 84663438 -36594092 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1230 963 223 34 24 chr12 84663442 84663649 -36593881 + B3 SINE B2 1 209 -7 2 1230 251 325 0 0 chr12 84664785 84664865 -36592665 + MIR SINE MIR 88 167 -95 2 1230 289 304 73 15 chr12 84665062 84665199 -36592331 - MIR3 SINE MIR -48 160 16 2 1230 343 306 132 46 chr12 84666077 84666413 -36591117 - L1MD LINE L1 -2145 4001 3623 2 1230 393 22 0 0 chr12 84666755 84666801 -36590729 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 2 1230 228 62 0 0 chr12 84667095 84667115 -36590415 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1230 1188 68 0 0 chr12 84667115 84667262 -36590268 - B1_Mm SINE Alu 0 147 1 2 1230 228 62 0 0 chr12 84667262 84667273 -36590257 + (T)n Simple_repeat Simple_repeat 1 11 0 2 1230 2657 108 13 13 chr12 84667624 84668018 -36589512 + ORR1B1 LTR MaLR 1 394 0 2 1230 451 209 48 82 chr12 84668133 84668279 -36589251 + MER5A DNA MER1_type 7 147 -42 2 1230 301 304 84 45 chr12 84669188 84669343 -36588187 + L2b LINE L2 2986 3146 -229 2 1230 1629 196 78 50 chr12 84669883 84670183 -36587347 + ORR1D2 LTR MaLR 2 317 -53 2 1230 2573 153 145 14 chr12 84670183 84670700 -36586830 + RMER4B LTR ERVK 1 585 0 2 1230 1629 196 78 50 chr12 84670700 84670758 -36586772 + ORR1D2 LTR MaLR 318 370 0 2 1230 262 298 212 12 chr12 84671331 84671416 -36586114 + MER45R DNA Tip100 2 103 -1478 2 1230 441 0 0 0 chr12 84671424 84671473 -36586057 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1230 799 255 24 24 chr12 84671517 84671722 -36585808 - B4 SINE B4 -87 205 1 2 1231 423 197 182 1 chr12 84673292 84673396 -36584134 - MIRb SINE MIR -117 151 26 2 1231 217 132 0 0 chr12 84673753 84673791 -36583739 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1231 696 294 0 0 chr12 84674389 84674532 -36582998 - ID_B1 SINE B4 0 224 82 2 1231 340 305 42 0 chr12 84674837 84674932 -36582598 + MIRm SINE MIR 84 182 -94 2 1231 310 274 48 0 chr12 84675249 84675333 -36582197 - MIRb SINE MIR -160 108 21 2 1231 904 100 0 130 chr12 84675338 84675499 -36582031 - B1_Mus1 SINE Alu -8 140 1 2 1231 32 67 0 0 chr12 84675574 84675634 -36581896 + AT_rich Low_complexity Low_complexity 1 60 0 2 1231 439 201 14 0 chr12 84676105 84676249 -36581281 + CT-rich Low_complexity Low_complexity 1 146 0 2 1231 1300 232 19 19 chr12 84676250 84676513 -36581017 - B4 SINE B4 -21 271 9 2 1231 184 253 45 136 chr12 84676602 84676712 -36580818 - L3 LINE CR1 -393 4096 3997 2 1231 396 345 40 0 chr12 84677050 84677250 -36580280 + MIR SINE MIR 54 261 -1 2 1231 204 40 0 0 chr12 84677367 84677392 -36580138 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1231 326 291 145 0 chr12 84677749 84677866 -36579664 + Lx8 LINE L1 7133 7266 -207 2 1231 265 271 0 54 chr12 84677866 84677940 -36579590 + RMER15 LTR ERVL 403 472 -103 2 1231 320 301 42 74 chr12 84679569 84679887 -36577643 + MTEb LTR MaLR 58 377 -2 2 1231 327 297 166 7 chr12 84680086 84680225 -36577305 - Charlie13b DNA Charlie -210 302 142 2 1231 268 177 177 0 chr12 84680340 84680419 -36577111 + MIR SINE MIR 38 130 -78 2 1231 412 229 67 30 chr12 84681110 84681245 -36576285 + B4A SINE B4 3 142 -150 2 1231 693 231 77 74 chr12 84681245 84681582 -36575948 + RLTR15 LTR ERVK 1 338 -21 2 1231 195 348 20 74 chr12 84681897 84682046 -36575484 + MER5A DNA MER1_type 48 188 -1 2 1231 634 211 71 45 chr12 84683939 84684093 -36573437 + RSINE1 SINE B4 3 160 -5 2 1231 319 273 32 20 chr12 84685745 84685872 -36571658 - MIRb SINE MIR -98 164 37 2 1231 285 286 66 116 chr12 84685967 84686289 -36571241 + ORR1E LTR MaLR 76 374 0 2 1231 767 140 0 25 chr12 84687230 84687391 -36570139 + GA-rich Low_complexity Low_complexity 3 159 0 2 1231 678 173 13 13 chr12 84687471 84687629 -36569901 + CT-rich Low_complexity Low_complexity 3 160 0 2 1231 238 179 0 0 chr12 84688160 84688199 -36569331 + L2b LINE L2 3121 3159 -216 2 1231 221 83 28 0 chr12 84688226 84688262 -36569268 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 2 1231 1498 84 16 0 chr12 84689302 84689493 -36568037 - B2_Mm2 SINE B2 -1 194 1 2 1231 509 279 14 41 chr12 84689540 84689686 -36567844 + B1F2 SINE Alu 2 143 -6 2 1231 256 318 67 13 chr12 84689962 84690112 -36567418 - MIRc SINE MIR -27 241 84 2 1231 647 235 118 18 chr12 84690755 84690924 -36566606 + B3A SINE B2 3 188 -10 2 1231 389 306 33 66 chr12 84690943 84691125 -36566405 + Charlie1b DNA MER1_type 72 247 -276 2 1231 297 328 8 41 chr12 84691258 84691379 -36566151 + MER5A1 DNA MER1_type 37 153 -13 2 1231 224 159 23 0 chr12 84691424 84691468 -36566062 + (ATTG)n Simple_repeat Simple_repeat 3 47 0 2 1231 380 265 37 64 chr12 84691657 84691766 -36565764 - MIRb SINE MIR -106 162 57 2 1231 246 222 44 73 chr12 84691848 84691916 -36565614 - MER5A1 DNA MER1_type -57 109 44 2 1231 266 50 25 0 chr12 84692363 84692403 -36565127 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1231 323 298 50 50 chr12 84692489 84692687 -36564843 - MER33 DNA MER1_type -67 257 60 2 1231 405 0 0 0 chr12 84693052 84693097 -36564433 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1231 444 19 0 0 chr12 84693097 84693150 -36564380 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1231 932 275 76 34 chr12 84693171 84693435 -36564095 + B4A SINE B4 8 282 -10 2 1231 270 207 0 0 chr12 84693452 84693510 -36564020 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1231 347 262 25 0 chr12 84694630 84694710 -36562820 + ID4_ SINE ID 2 83 0 2 1231 679 206 0 58 chr12 84697744 84697883 -36559647 + B1_Mur1 SINE Alu 2 132 -17 2 1231 605 121 28 28 chr12 84697898 84698043 -36559487 + GA-rich Low_complexity Low_complexity 4 148 0 2 1231 8948 81 3 2 chr12 84698054 84700071 -36557459 + L1_Mus1 LINE L1 4551 6567 0 2 1231 228 302 49 59 chr12 84700111 84700213 -36557317 - L3 LINE CR1 -32 4457 4357 2 1231 261 0 0 0 chr12 84700299 84700328 -36557202 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1231 224 230 67 160 chr12 84700439 84700558 -36556972 + PB1D7 SINE Alu 5 112 -8 2 1231 1019 259 0 26 chr12 84700570 84700800 -36556730 + ID_B1 SINE B4 1 224 0 2 1231 415 269 84 104 chr12 84700812 84701019 -36556511 + L1ME2 LINE L1 3177 3388 -2758 2 1231 613 264 12 49 chr12 84701019 84701182 -36556348 - RSINE1 SINE B4 -7 158 2 2 1231 527 269 56 48 chr12 84701182 84701533 -36555997 + L1ME2 LINE L1 3389 3725 -2421 2 1231 1053 79 0 7 chr12 84701563 84701704 -36555826 - BGLII LTR ERVK 0 421 282 2 1231 685 102 36 7 chr12 84701706 84701844 -36555686 + BGLII LTR ERVK 176 317 -104 2 1231 329 326 58 0 chr12 84702046 84702132 -36555398 + L1ME2 LINE L1 4618 4708 -1438 2 1231 198 0 0 0 chr12 84702145 84702167 -36555363 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2 1231 505 284 14 36 chr12 84702169 84702308 -36555222 - B1_Mur1 SINE Alu -13 136 1 2 1231 292 292 88 7 chr12 84702353 84702535 -36554995 + L1ME2 LINE L1 4781 4978 -1168 2 1231 352 284 0 17 chr12 84702629 84702747 -36554783 + L1MD LINE L1 5104 5219 -927 2 1231 312 27 0 0 chr12 84702747 84702784 -36554746 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1231 739 204 0 7 chr12 84703473 84703621 -36553909 + B1_Mus1 SINE Alu 1 147 -1 2 1231 214 167 33 0 chr12 84703622 84703682 -36553848 + GA-rich Low_complexity Low_complexity 3 64 0 2 1231 533 276 72 34 chr12 84703704 84703940 -36553590 - Lx7 LINE L1 -394 7302 7058 2 1231 237 311 0 13 chr12 84703932 84704007 -36553523 - Lx6 LINE L1 -592 6868 6795 2 1231 763 338 65 20 chr12 84704138 84704491 -36553039 + MER21B LTR ERV1 468 836 -27 2 1231 838 310 53 27 chr12 84704500 84705039 -36552491 + L1ME2 LINE L1 5367 5919 -245 2 1231 871 125 23 0 chr12 84705197 84705325 -36552205 - B1_Mur4 SINE Alu -17 133 3 2 1231 1085 206 60 30 chr12 84705327 84705468 -36552062 + Lx7 LINE L1 7352 7495 -201 2 1231 222 37 0 0 chr12 84705468 84705495 -36552035 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2 1231 1085 206 60 30 chr12 84705495 84705688 -36551842 + Lx7 LINE L1 7496 7695 -1 2 1231 446 270 188 30 chr12 84705689 84705891 -36551639 + L1MDa LINE L1 1267 1500 -5133 2 1231 736 221 36 76 chr12 84705910 84706135 -36551395 + B3 SINE B2 1 216 0 2 1231 701 327 84 30 chr12 84706187 84706625 -36550905 + L1MDa LINE L1 1504 1965 -4668 2 1231 1476 227 18 38 chr12 84706941 84706993 -36550537 + Lx6 LINE L1 6952 7007 -453 2 1231 2410 66 119 11 chr12 84706993 84707345 -36550185 + RLTR10 LTR ERVK 1 390 0 2 1231 1476 227 18 38 chr12 84707345 84707631 -36549899 + Lx6 LINE L1 7008 7283 -177 2 1231 210 71 0 0 chr12 84707640 84707668 -36549862 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2 1231 332 290 20 0 chr12 84707721 84707821 -36549709 + Lx7 LINE L1 7207 7308 -388 2 1231 394 157 24 0 chr12 84707827 84707910 -36549620 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1231 977 47 0 8 chr12 84708116 84708244 -36549286 + (GAAA)n Simple_repeat Simple_repeat 3 129 0 3 1231 1161 63 21 0 chr12 84708410 84708553 -36548977 + B1_Mm SINE Alu 2 147 0 3 1231 242 73 24 0 chr12 84708553 84708594 -36548936 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 3 1231 234 337 10 19 chr12 84708903 84709006 -36548524 + (TATG)n Simple_repeat Simple_repeat 4 105 0 3 1231 1147 255 125 106 chr12 84709202 84709818 -36547712 + L1MC5 LINE L1 6724 7298 -663 3 1231 635 0 13 0 chr12 84709818 84709893 -36547637 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 1231 1147 255 125 106 chr12 84709893 84710101 -36547429 + L1MC5 LINE L1 7299 7563 -398 3 1231 255 333 74 0 chr12 84710181 84710289 -36547241 - PB1D10 SINE Alu -1 116 1 3 1231 338 294 37 48 chr12 84710310 84710499 -36547031 + L1MC5 LINE L1 7730 7916 -45 3 1231 343 263 86 26 chr12 84710533 84710650 -36546880 + ID_B1 SINE B4 87 210 -14 3 1231 947 228 108 22 chr12 84710660 84710929 -36546601 + B4 SINE B4 1 292 0 3 1231 204 329 0 14 chr12 84710929 84711003 -36546527 + (CATG)n Simple_repeat Simple_repeat 2 74 0 3 1231 274 298 152 8 chr12 84711129 84711261 -36546269 - MIR SINE MIR -1 261 111 3 1231 287 331 73 35 chr12 84712326 84712586 -36544944 + Lx8 LINE L1 7201 7470 -3 3 1231 789 290 20 10 chr12 84712590 84712761 -36544769 + B3A SINE B2 1 175 -23 3 1231 204 40 0 0 chr12 84712761 84712786 -36544744 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1231 789 290 20 10 chr12 84712786 84712809 -36544721 + B3A SINE B2 176 197 -1 3 1231 436 277 90 38 chr12 84713143 84713389 -36544141 - ORR1E LTR MaLR -108 262 1 3 1231 973 282 127 32 chr12 84713406 84713940 -36543590 - L1MB3 LINE L1 -93 6090 5506 3 1231 486 203 124 14 chr12 84714029 84714174 -36543356 - RSINE1 SINE B4 -3 162 2 3 1231 260 233 0 48 chr12 84714766 84714829 -36542701 - PB1D10 SINE Alu -57 60 1 3 1231 27 0 0 0 chr12 84714841 84714868 -36542662 + AT_rich Low_complexity Low_complexity 1 27 0 3 1231 1104 79 7 0 chr12 84714943 84715082 -36542448 + B1_Mus2 SINE Alu 1 140 -7 3 1231 251 0 59 0 chr12 84715082 84715116 -36542414 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1231 412 324 0 0 chr12 84716287 84716389 -36541141 + PB1D10 SINE Alu 3 104 -13 3 1231 253 320 53 38 chr12 84717018 84717151 -36540379 + MLT1A LTR MaLR 8 142 -232 3 1231 688 274 60 60 chr12 84717190 84717407 -36540123 + ID_B1 SINE B4 8 224 0 3 1231 747 0 0 0 chr12 84717463 84717546 -36539984 + (GGGAGA)n Simple_repeat Simple_repeat 4 86 0 3 1231 241 308 0 0 chr12 84717840 84717892 -36539638 + L2b LINE L2 3305 3356 -19 3 1231 183 327 0 0 chr12 84718937 84718989 -36538541 + L3b LINE CR1 363 414 -68 3 1231 1062 101 13 20 chr12 84719190 84719341 -36538189 + B1_Mur4 SINE Alu 1 150 0 3 1231 258 216 0 0 chr12 84719341 84719415 -36538115 + A-rich Low_complexity Low_complexity 1 74 0 3 1231 960 286 46 28 chr12 84720053 84720377 -36537153 - MTEa LTR MaLR -30 349 20 3 1231 1036 156 11 27 chr12 84720494 84720679 -36536851 + URR1B DNA MER1_type 44 225 0 3 1231 1435 78 21 0 chr12 84720855 84721046 -36536484 + B2_Mm2 SINE B2 1 195 0 3 1231 3486 23 5 0 chr12 84721745 84722139 -36535391 + MTA_Mm LTR MaLR 1 396 0 3 1231 233 221 19 0 chr12 84722327 84722440 -36535090 + GA-rich Low_complexity Low_complexity 1 115 0 3 1231 429 345 81 45 chr12 84722630 84723087 -36534443 + L2b LINE L2 2759 3223 -164 3 1231 818 201 0 0 chr12 84723087 84723221 -36534309 + B1_Mur2 SINE Alu 1 134 -15 3 1231 235 328 114 30 chr12 84723221 84723372 -36534158 + L2b LINE L2 3224 3351 -24 3 1231 606 318 28 18 chr12 84724455 84724673 -36532857 + B4A SINE B4 70 289 -3 3 1231 234 0 0 0 chr12 84724732 84724758 -36532772 + (TGGA)n Simple_repeat Simple_repeat 2 27 0 3 1231 183 342 0 52 chr12 84724840 84724858 -36532672 - MIR3 SINE MIR -46 162 147 3 1231 201 74 0 0 chr12 84724858 84724885 -36532645 + (CCA)n Simple_repeat Simple_repeat 1 27 0 3 1231 214 263 44 30 chr12 84724885 84724953 -36532577 - MIRm SINE MIR -125 151 77 3 1231 285 118 0 0 chr12 84725354 84725405 -36532125 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1231 231 177 0 0 chr12 84725461 84725523 -36532007 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1231 22 56 0 0 chr12 84725719 84725755 -36531775 + AT_rich Low_complexity Low_complexity 1 36 0 3 1231 331 332 103 98 chr12 84725808 84726022 -36531508 + Tigger7 DNA MER2_type 60 274 -2217 3 1231 831 356 19 7 chr12 84726109 84726417 -36531113 - MTEb LTR MaLR -4 375 64 3 1231 328 339 33 17 chr12 84726489 84726609 -36530921 + MER58B DNA MER1_type 220 341 0 3 1231 1734 246 20 5 chr12 84727495 84727888 -36529642 + MT2A LTR ERVL 1 399 -134 3 1231 599 239 6 0 chr12 84727891 84728058 -36529472 + (TA)n Simple_repeat Simple_repeat 2 169 0 3 1231 877 256 82 0 chr12 84728934 84729141 -36528389 - ID_B1 SINE B4 0 224 1 3 1231 290 390 81 5 chr12 84729349 84729558 -36527972 - MIR SINE MIR -24 238 14 3 1231 389 374 19 13 chr12 84729941 84730098 -36527432 + L2a LINE L2 3265 3422 -4 3 1231 323 198 55 55 chr12 84730256 84730347 -36527183 - MIRc SINE MIR -89 179 89 3 1231 504 0 0 0 chr12 84730533 84730589 -36526941 + (TCTCC)n Simple_repeat Simple_repeat 2 57 0 3 1231 291 291 38 0 chr12 84731462 84731541 -36525989 - MIR3 SINE MIR -49 159 78 3 1231 1070 231 9 22 chr12 84732561 84732787 -36524743 + ID_B1 SINE B4 2 224 0 3 1231 480 317 41 0 chr12 84733584 84733707 -36523823 + ID_B1 SINE B4 82 209 -15 3 1231 381 224 24 18 chr12 84733752 84733920 -36523610 + (TATATG)n Simple_repeat Simple_repeat 5 173 0 3 1231 327 228 25 15 chr12 84733936 84734137 -36523393 + (TATG)n Simple_repeat Simple_repeat 1 203 0 3 1231 551 220 17 11 chr12 84734128 84734307 -36523223 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 3 1231 182 333 26 86 chr12 84734334 84734485 -36523045 - L3 LINE CR1 -3515 974 833 3 1231 255 289 53 0 chr12 84735213 84735289 -36522241 - ID4_ SINE ID -3 80 1 3 1231 575 304 199 19 chr12 84735339 84735765 -36521765 - MLT1D LTR MaLR 0 505 3 3 1231 692 272 45 20 chr12 84735864 84736063 -36521467 + B3 SINE B2 1 204 -12 3 1231 737 248 101 24 chr12 84736136 84736343 -36521187 + ID_B1 SINE B4 2 224 0 3 1231 1030 180 174 2 chr12 84736395 84736665 -36520865 - MTD LTR MaLR -10 409 76 3 1231 619 127 5 10 chr12 84736634 84736740 -36520790 + B1_Mus2 SINE Alu 17 119 -1 3 1231 309 327 8 58 chr12 84736772 84736892 -36520638 - MTD LTR MaLR -307 114 1 3 1231 422 259 8 33 chr12 84737589 84737709 -36519821 + PB1D10 SINE Alu 1 117 0 3 1231 266 203 146 52 chr12 84737715 84737797 -36519733 + B4A SINE B4 126 211 -81 3 1231 246 242 48 87 chr12 84737803 84737907 -36519623 + RLTR4_Mm LTR ERV1 399 498 -244 3 1231 641 257 127 32 chr12 84738173 84738426 -36519104 + MLT1H LTR MaLR 273 549 0 3 1231 603 207 91 0 chr12 84738655 84738776 -36518754 - RSINE1 SINE B4 -33 132 1 3 1231 408 299 47 0 chr12 84738847 84738954 -36518576 + ID_B1 SINE B4 2 113 -111 3 1231 671 120 12 31 chr12 84739023 84739186 -36518344 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 3 1231 285 226 0 0 chr12 84740357 84740441 -36517089 + (TGGA)n Simple_repeat Simple_repeat 4 87 0 3 1231 801 279 137 10 chr12 84741486 84741779 -36515751 - MER2 DNA MER2_type 0 345 16 3 1231 339 192 0 0 chr12 84742278 84742351 -36515179 + (TTG)n Simple_repeat Simple_repeat 2 74 0 3 1231 270 0 0 0 chr12 84742374 84742404 -36515126 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1231 645 222 206 22 chr12 84742404 84742584 -36514946 - ID_B1 SINE B4 -11 213 1 3 1231 617 158 6 0 chr12 84742675 84742833 -36514697 + (CA)n Simple_repeat Simple_repeat 1 159 0 3 1231 230 152 0 17 chr12 84743198 84743258 -36514272 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1231 1667 42 0 0 chr12 84744130 84744322 -36513208 + B2_Mm1a SINE B2 1 192 -1 3 1231 501 110 0 0 chr12 84744387 84744469 -36513061 + (TGGA)n Simple_repeat Simple_repeat 2 83 0 3 1231 192 40 0 0 chr12 84744937 84744962 -36512568 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 1231 798 216 154 6 chr12 84745250 84745432 -36512098 + B3 SINE B2 2 210 -6 3 1231 203 274 48 48 chr12 84745642 84745731 -36511799 + MIRm SINE MIR 77 159 -49 3 1231 692 250 64 21 chr12 84746155 84746343 -36511187 + ID_B1 SINE B4 18 213 -11 3 1231 195 129 0 0 chr12 84746363 84746394 -36511136 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1231 570 268 0 73 chr12 84746809 84746986 -36510544 - RSINE1 SINE B4 0 165 2 3 1231 308 333 52 72 chr12 84747630 84747824 -36509706 + MIR SINE MIR 72 261 -1 3 1231 355 143 54 0 chr12 84747898 84747954 -36509576 + RSINE1 SINE B4 38 96 -69 3 1231 26 50 0 0 chr12 84748736 84748776 -36508754 + AT_rich Low_complexity Low_complexity 1 40 0 3 1231 505 223 18 18 chr12 84748885 84748999 -36508531 + PB1D10 SINE Alu 4 117 0 3 1231 236 308 55 55 chr12 84749186 84749296 -36508234 + MLT1C LTR MaLR 41 150 -215 3 1231 195 162 0 0 chr12 84749306 84749343 -36508187 + GA-rich Low_complexity Low_complexity 2 38 0 3 1231 356 124 16 0 chr12 84750111 84750179 -36507351 - B2_Mm2 SINE B2 -121 72 1 3 1231 210 71 0 0 chr12 84750281 84750309 -36507221 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 3 1231 351 289 37 118 chr12 84751432 84751593 -36505937 + B1F SINE Alu 1 148 -1 3 1231 1206 68 0 0 chr12 84751594 84751742 -36505788 + B1_Mus1 SINE Alu 1 148 0 3 1231 507 73 0 0 chr12 84751751 84751819 -36505711 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 1231 536 294 131 52 chr12 84751973 84752263 -36505267 + MLT1C LTR MaLR 154 466 -1 3 1231 186 331 73 40 chr12 84752451 84752602 -36504928 - MIRc SINE MIR -44 224 69 3 1231 222 37 0 0 chr12 84754442 84754469 -36503061 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 3 1231 556 173 53 26 chr12 84754927 84755040 -36502490 + PB1D10 SINE Alu 2 117 0 4 1231 276 85 64 0 chr12 84755121 84755168 -36502362 + L1M4 LINE L1 3636 3685 -2461 4 1231 1486 256 70 23 chr12 84755192 84755962 -36501568 + L1M4 LINE L1 4959 5772 -407 4 1231 457 276 178 12 chr12 84756035 84756204 -36501326 - MLT1D LTR MaLR -7 498 302 4 1231 357 256 0 0 chr12 84756361 84756439 -36501091 + ID4 SINE ID 5 82 -1 4 1231 800 315 70 10 chr12 84756447 84756745 -36500785 + B4A SINE B4 2 292 0 4 1231 195 239 0 21 chr12 84757343 84757390 -36500140 + MIRc SINE MIR 132 177 -91 4 1231 260 271 100 0 chr12 84757433 84757503 -36500027 + B3A SINE B2 1 77 -121 4 1231 565 192 167 0 chr12 84757470 84757590 -36499940 + B1_Mus2 SINE Alu 7 146 -1 4 1231 657 220 47 57 chr12 84757564 84757757 -36499773 + B3A SINE B2 8 198 0 4 1231 582 324 65 25 chr12 84758347 84758626 -36498904 - B4 SINE B4 -2 290 1 4 1231 610 165 51 17 chr12 84759028 84759145 -36498385 - RSINE1 SINE B4 -30 135 15 4 1231 232 254 51 0 chr12 84759199 84759258 -36498272 + RSINE1 SINE B4 3 64 -101 4 1231 244 337 42 10 chr12 84759323 84759560 -36497970 + L1M3 LINE L1 4938 5182 -964 4 1231 33 43 0 0 chr12 84759595 84759642 -36497888 + AT_rich Low_complexity Low_complexity 1 47 0 4 1231 21 0 0 0 chr12 84759754 84759775 -36497755 + AT_rich Low_complexity Low_complexity 1 21 0 4 1231 835 164 15 0 chr12 84759935 84760069 -36497461 + B1_Mur3 SINE Alu 3 138 -11 4 1231 189 147 0 0 chr12 84760119 84760153 -36497377 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1231 419 314 100 62 chr12 84760185 84760606 -36496924 + L1ME2 LINE L1 5715 6151 -13 4 1231 353 162 59 0 chr12 84760742 84760810 -36496720 + U6 snRNA snRNA 1 72 -35 4 1231 418 296 111 8 chr12 84761012 84761138 -36496392 + RSINE1 SINE B4 25 163 -2 4 1231 3347 180 57 14 chr12 84761174 84762012 -36495518 + RMER1B Other Other 84 1046 -20 4 1231 1494 236 39 22 chr12 84762201 84762565 -36494965 + ORR1D2 LTR MaLR 1 370 0 4 1231 1148 277 36 14 chr12 84762650 84762928 -36494602 + B4A SINE B4 1 284 -8 4 1231 1093 170 51 5 chr12 84762993 84763188 -36494342 + B3 SINE B2 2 205 -11 4 1231 26 30 0 0 chr12 84763188 84763221 -36494309 + AT_rich Low_complexity Low_complexity 1 33 0 4 1231 1106 57 43 0 chr12 84763226 84763366 -36494164 + B1_Mm SINE Alu 2 147 0 4 1231 426 85 0 0 chr12 84763366 84763425 -36494105 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 4 1231 271 250 60 84 chr12 84763722 84763805 -36493725 + ID SINE ID 3 83 -141 4 1231 2156 283 38 49 chr12 84764222 84765037 -36492493 + Lx8 LINE L1 6222 7027 -446 4 1231 417 259 12 87 chr12 84765416 84765577 -36491953 + B1F SINE Alu 1 149 0 4 1231 309 238 0 0 chr12 84767220 84767283 -36490247 - B4A SINE B4 -204 88 26 4 1231 847 207 8 9 chr12 84767659 84767822 -36489708 + B3A SINE B2 2 157 -38 4 1231 417 70 0 0 chr12 84767822 84767879 -36489651 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1231 669 224 40 76 chr12 84767879 84767913 -36489617 + B2_Mm2 SINE B2 158 191 -4 4 1231 953 113 125 6 chr12 84767920 84768080 -36489450 + B2_Mm1t SINE B2 1 179 -14 4 1231 346 132 0 31 chr12 84768166 84768271 -36489259 + B2_Mm2 SINE B2 47 184 -11 4 1231 192 40 0 0 chr12 84768373 84768398 -36489132 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1231 233 313 0 0 chr12 84769305 84769372 -36488158 + tRNA-Ala-GCA tRNA tRNA 6 72 -3 4 1231 540 246 95 87 chr12 84769437 84769668 -36487862 + B4 SINE B4 60 292 0 4 1231 714 232 54 70 chr12 84770139 84770324 -36487206 - B3A SINE B2 -16 182 1 4 1231 580 221 18 0 chr12 84770330 84770443 -36487087 - ID_B1 SINE B4 -1 223 109 4 1231 411 268 73 0 chr12 84770336 84770459 -36487071 - B1F2 SINE Alu -7 142 11 4 1231 297 89 0 0 chr12 84770489 84770534 -36486996 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1231 221 53 53 0 chr12 84770534 84770571 -36486959 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 4 1231 805 203 0 7 chr12 84770611 84770755 -36486775 + B1_Mur2 SINE Alu 1 143 -6 4 1231 276 312 0 0 chr12 84770772 84770836 -36486694 - RSINE1 SINE B4 -100 65 2 4 1231 189 368 16 23 chr12 84770930 84771058 -36486472 - L2b LINE L2 -5 3370 3244 4 1231 299 250 38 38 chr12 84771667 84771746 -36485784 + ID_B1 SINE B4 142 220 -4 4 1231 258 262 0 16 chr12 84771773 84771835 -36485695 + GA-rich Low_complexity Low_complexity 4 64 0 4 1231 464 289 113 27 chr12 84771841 84772026 -36485504 + ID_B1 SINE B4 18 218 -6 4 1231 767 102 5 54 chr12 84772061 84772247 -36485283 + GA-rich Low_complexity Low_complexity 4 180 0 4 1231 451 281 79 21 chr12 84772680 84772875 -36484655 + L1MA5 LINE L1 5798 6002 -298 4 1231 874 219 99 0 chr12 84772906 84773098 -36484432 - B3 SINE B2 -4 212 2 4 1231 2556 105 43 39 chr12 84773139 84773576 -36483954 - RLTR11A LTR ERVK 0 528 90 4 1231 331 285 21 21 chr12 84773582 84773722 -36483808 + L1MA5 LINE L1 6158 6297 -3 4 1231 533 220 109 36 chr12 84773743 84773880 -36483650 - ORR1D1 LTR MaLR -227 147 1 4 1231 290 290 0 41 chr12 84773912 84774009 -36483521 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 4 1231 370 309 55 8 chr12 84774112 84774239 -36483291 - MER20 DNA MER1_type -61 158 26 4 1231 575 269 20 14 chr12 84774564 84774711 -36482819 + B1F1 SINE Alu 2 149 0 4 1231 195 42 0 0 chr12 84775201 84775225 -36482305 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1231 197 33 33 0 chr12 84775907 84775937 -36481593 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1231 441 248 0 0 chr12 84775988 84776149 -36481381 + (TG)n Simple_repeat Simple_repeat 1 161 0 4 1231 1380 160 4 4 chr12 84776406 84776632 -36480898 - URR1A DNA MER1_type 0 226 1 4 1231 1275 173 23 0 chr12 84777433 84777653 -36479877 + URR1B DNA MER1_type 1 225 0 4 1231 4354 192 43 8 chr12 84777674 84778567 -36478963 + Lx9 LINE L1 6711 7634 -10 4 1231 362 326 19 120 chr12 84778570 84778786 -36478744 + B4A SINE B4 81 274 -18 4 1231 405 211 24 12 chr12 84778830 84778845 -36478685 + (TA)n Simple_repeat Simple_repeat 1 15 0 4 1231 279 0 0 0 chr12 84778845 84778876 -36478654 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1231 405 211 24 12 chr12 84778876 84779028 -36478502 + (TA)n Simple_repeat Simple_repeat 1 154 0 4 1231 362 302 50 0 chr12 84779045 84779225 -36478305 + L1MB7 LINE L1 5478 5673 -501 4 1231 537 229 54 18 chr12 84779228 84779339 -36478191 + B1F1 SINE Alu 1 115 -34 4 1231 357 333 67 15 chr12 84779339 84779362 -36478168 + ID_B1 SINE B4 82 222 -2 4 1231 477 236 16 63 chr12 84779357 84779483 -36478047 + B3A SINE B2 49 164 -34 4 1231 324 0 0 0 chr12 84779487 84779523 -36478007 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1231 1185 254 35 12 chr12 84779545 84779884 -36477646 + L1MB7 LINE L1 5669 6015 -169 4 1231 276 258 91 0 chr12 84781435 84781501 -36476029 - L2c LINE L2 -31 3356 3285 4 1231 281 328 112 22 chr12 84781877 84782011 -36475519 + MIRb SINE MIR 25 170 -98 4 1231 333 0 0 0 chr12 84782113 84782150 -36475380 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1231 382 191 8 146 chr12 84782389 84782512 -36475018 + MT2B2 LTR ERVL 145 250 -334 4 1231 583 183 112 40 chr12 84782421 84782546 -36474984 + B1_Mus1 SINE Alu 6 139 -9 4 1231 234 0 0 0 chr12 84782548 84782574 -36474956 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1231 618 132 0 32 chr12 84782575 84782631 -36474899 + polypurine Low_complexity Low_complexity 3 58 0 4 1231 1491 0 6 11 chr12 84782631 84782812 -36474718 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1231 618 132 0 32 chr12 84782812 84782880 -36474650 + polypurine Low_complexity Low_complexity 59 123 0 4 1231 592 195 109 13 chr12 84782883 84783069 -36474461 - ORR1B1 LTR MaLR -168 191 1 4 1231 701 231 103 0 chr12 84783108 84783264 -36474266 - ID_B1 SINE B4 0 224 53 4 1231 243 0 0 0 chr12 84783655 84783682 -36473848 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1231 1059 180 24 43 chr12 84783689 84783898 -36473632 + B3 SINE B2 1 205 -11 4 1231 295 287 79 39 chr12 84784157 84784284 -36473246 - MIR SINE MIR -89 179 48 4 1231 258 32 0 0 chr12 84785019 84785050 -36472480 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 4 1231 1107 44 0 7 chr12 84785050 84785187 -36472343 - B1_Mus1 SINE Alu 0 148 13 4 1231 402 167 15 0 chr12 84785479 84785545 -36471985 + MLT1J LTR MaLR 99 165 -347 4 1231 546 248 18 9 chr12 84785776 84785890 -36471640 + RSINE1 SINE B4 1 115 -50 4 1231 342 0 0 0 chr12 84785891 84785929 -36471601 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1231 182 255 21 0 chr12 84786006 84786053 -36471477 + L2b LINE L2 3324 3371 -4 4 1231 277 315 87 35 chr12 84786349 84786579 -36470951 - MIRb SINE MIR -21 247 6 4 1231 458 250 47 31 chr12 84787060 84787111 -36470419 + B4 SINE B4 36 88 -204 4 1231 656 90 3 12 chr12 84787111 84787214 -36470316 + B1_Mus2 SINE Alu 1 98 -216 4 1231 295 292 0 0 chr12 84787252 84787317 -36470213 + ID4_ SINE ID 3 67 -16 4 1231 1105 195 40 0 chr12 84787389 84787589 -36469941 + B3 SINE B2 2 209 -7 4 1231 655 144 76 43 chr12 84787589 84787755 -36469775 - B3 SINE B2 -4 194 16 4 1231 216 236 73 0 chr12 84787771 84787826 -36469704 + B1F SINE Alu 83 141 -8 4 1231 270 217 87 0 chr12 84788588 84788657 -36468873 - MER102c DNA MER1_type -150 181 107 5 1231 482 200 0 12 chr12 84788970 84789056 -36468474 - ID_B1 SINE B4 -4 220 136 5 1231 479 39 51 0 chr12 84789656 84789734 -36467796 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 1231 1305 71 37 42 chr12 84790877 84791067 -36466463 + B2_Mm2 SINE B2 2 190 -5 5 1231 640 158 136 77 chr12 84791080 84791255 -36466275 + B3 SINE B2 7 185 -8 5 1231 637 332 0 15 chr12 84791255 84791451 -36466079 - B3A SINE B2 -5 193 1 5 1231 369 0 0 0 chr12 84791600 84791641 -36465889 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1231 941 154 0 26 chr12 84791687 84791840 -36465690 - B1_Mur4 SINE Alu 0 150 2 5 1231 501 191 118 0 chr12 84791920 84792030 -36465500 + ID_B1 SINE B4 85 207 -17 5 1231 547 268 69 65 chr12 84792592 84792620 -36464910 + CYRA11_Mm Unknown Y-chromosome 145 336 -281 5 1231 1236 183 56 0 chr12 84792620 84792833 -36464697 - URR1B DNA MER1_type 0 225 1 5 1231 235 304 98 0 chr12 84793552 84793654 -36463876 - MIRc SINE MIR -40 228 117 5 1231 1117 121 131 0 chr12 84794538 84794737 -36462793 - URR1A DNA MER1_type 0 226 2 5 1231 1943 147 48 12 chr12 84795113 84795444 -36462086 - MTD LTR MaLR -8 411 69 5 1231 432 0 0 0 chr12 84796205 84796253 -36461277 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1231 490 270 0 18 chr12 84796254 84796367 -36461163 - B4 SINE B4 -69 223 113 5 1231 711 188 42 35 chr12 84796762 84796905 -36460625 + ID_B1 SINE B4 81 224 0 5 1231 405 118 407 12 chr12 84796916 84797002 -36460528 + PB1D9 SINE Alu 1 120 0 5 1231 240 282 12 25 chr12 84797100 84797180 -36460350 + (CACG)n Simple_repeat Simple_repeat 1 79 0 5 1231 938 181 161 9 chr12 84797203 84797420 -36460110 - MTD LTR MaLR -2 417 168 5 1231 240 35 0 0 chr12 84797515 84797544 -36459986 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 5 1231 285 209 0 0 chr12 84797842 84797909 -36459621 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 5 1231 432 276 45 13 chr12 84797972 84798126 -36459404 - HAL1 LINE L1 -357 2150 1992 5 1231 192 349 35 11 chr12 84799500 84799587 -36457943 + L2b LINE L2 3266 3354 -21 5 1231 872 188 122 25 chr12 84799637 84799834 -36457696 - B3 SINE B2 0 216 1 5 1231 1316 95 26 11 chr12 84799880 84800071 -36457459 + B2_Mm2 SINE B2 2 195 0 5 1231 266 234 9 0 chr12 84800104 84800211 -36457319 + (TG)n Simple_repeat Simple_repeat 1 108 0 5 1231 384 313 7 0 chr12 84800232 84800382 -36457148 + (TATATG)n Simple_repeat Simple_repeat 6 156 0 5 1231 510 61 0 0 chr12 84800383 84800449 -36457081 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1231 291 28 0 0 chr12 84800449 84800485 -36457045 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1231 478 221 110 0 chr12 84801421 84801548 -36455982 + L2a LINE L2 3285 3425 -1 5 1231 226 311 76 0 chr12 84801582 84801701 -36455829 + L2a LINE L2 3280 3407 -19 5 1231 520 208 83 23 chr12 84801917 84802050 -36455480 + B1F SINE Alu 1 141 -8 5 1231 189 0 0 0 chr12 84802285 84802306 -36455224 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 5 1231 479 287 8 8 chr12 84803111 84803234 -36454296 - B3 SINE B2 -13 203 81 5 1231 226 271 165 0 chr12 84803326 84803411 -36454119 + MIRc SINE MIR 64 162 -106 5 1231 440 301 5 133 chr12 84803411 84803509 -36454021 + RSINE1 SINE B4 2 89 -76 5 153 1268 34 0 0 chr12 84803509 84803656 -36453874 + B1_Mm SINE Alu 1 147 0 5 1232 440 301 5 133 chr12 84803656 84803745 -36453785 + RSINE1 SINE B4 90 165 0 5 1232 520 260 49 0 chr12 84803857 84803980 -36453550 - ID_B1 SINE B4 -3 221 93 5 1232 354 138 0 0 chr12 84804792 84804850 -36452680 + (A)n Simple_repeat Simple_repeat 1 58 0 5 1232 262 268 58 47 chr12 84804915 84805001 -36452529 - MER2 DNA MER2_type -7 338 252 5 1232 456 231 68 15 chr12 84805011 84805143 -36452387 - MTD LTR MaLR -14 405 267 5 1232 243 0 0 0 chr12 84805163 84805190 -36452340 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1232 797 79 17 9 chr12 84805190 84805296 -36452234 - B1_Mus1 SINE Alu -10 138 31 5 1232 1221 188 34 17 chr12 84805296 84805534 -36451996 - MTD LTR MaLR -170 249 8 5 1232 438 94 0 0 chr12 84805545 84805609 -36451921 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 5 1232 513 252 134 0 chr12 84805735 84805854 -36451676 + B1F SINE Alu 1 135 -14 5 1232 248 281 0 0 chr12 84805859 84805916 -36451614 + (TAG)n Simple_repeat Simple_repeat 1 57 0 5 1232 314 287 109 0 chr12 84805963 84806064 -36451466 - MER2 DNA MER2_type -218 127 16 5 1232 320 325 43 9 chr12 84807085 84807200 -36450330 + L2b LINE L2 3241 3359 -16 5 1232 387 0 0 0 chr12 84808383 84808426 -36449104 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 5 1232 346 238 17 122 chr12 84808435 84808550 -36448980 + ID_B1 SINE B4 82 184 -40 5 1232 1243 47 0 0 chr12 84808552 84808700 -36448830 + B1_Mus1 SINE Alu 1 148 0 5 1232 593 61 12 0 chr12 84808755 84808837 -36448693 + (CAT)n Simple_repeat Simple_repeat 2 84 0 5 1232 339 323 141 0 chr12 84809002 84809194 -36448336 - MIR SINE MIR -8 254 36 5 1232 359 253 175 70 chr12 84809464 84809475 -36448055 - ID_B1 SINE B4 -2 222 212 5 1232 217 75 50 0 chr12 84809475 84809515 -36448015 + (ATTG)n Simple_repeat Simple_repeat 4 45 0 5 1232 359 253 175 70 chr12 84809515 84809703 -36447827 - ID_B1 SINE B4 -13 211 3 5 1232 279 265 112 0 chr12 84809769 84809867 -36447663 + PB1D7 SINE Alu 1 109 -11 5 1232 207 0 0 0 chr12 84809868 84809891 -36447639 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 5 1232 1177 44 0 0 chr12 84809892 84810029 -36447501 + B1_Mus2 SINE Alu 2 138 -9 5 1232 635 180 164 0 chr12 84810079 84810207 -36447323 - B1_Mur2 SINE Alu 0 149 1 5 1232 545 231 98 15 chr12 84810411 84810543 -36446987 + RSINE1 SINE B4 2 144 -21 5 1232 396 71 0 0 chr12 84810561 84810617 -36446913 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1232 295 247 39 0 chr12 84811073 84811150 -36446380 - 5S rRNA rRNA -41 80 1 5 1232 505 234 15 47 chr12 84811465 84811606 -36445924 + B1_Mur1 SINE Alu 2 147 -3 5 1232 1237 25 25 0 chr12 84811651 84811810 -36445720 + (GGAAA)n Simple_repeat Simple_repeat 3 165 0 5 1232 864 126 82 0 chr12 84813594 84813729 -36443801 + B1_Mur3 SINE Alu 4 149 0 5 1232 310 228 0 0 chr12 84814390 84814447 -36443083 + PB1D7 SINE Alu 1 57 -63 5 1232 318 329 14 48 chr12 84814507 84814654 -36442876 + Charlie4z DNA MER1_type 17 158 -9 5 1232 264 282 106 0 chr12 84815431 84815516 -36442014 + PB1D10 SINE Alu 3 96 -21 5 1232 1214 101 10 26 chr12 84815570 84815593 -36441937 - B2_Mm1a SINE B2 0 193 172 5 1232 786 197 7 26 chr12 84815593 84815744 -36441786 - B1_Mur1 SINE Alu 0 149 2 5 1232 1214 101 10 26 chr12 84815744 84815756 -36441774 - B2_Mm1a SINE B2 -22 171 162 5 1232 306 0 0 0 chr12 84815756 84815790 -36441740 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 5 1232 1214 101 10 26 chr12 84815790 84815947 -36441583 - B2_Mm1a SINE B2 -32 161 4 5 1232 222 196 54 0 chr12 84816136 84816192 -36441338 + CT-rich Low_complexity Low_complexity 4 62 0 5 1232 26 30 0 0 chr12 84817083 84817116 -36440414 + AT_rich Low_complexity Low_complexity 1 33 0 5 1232 870 19 10 0 chr12 84818346 84818450 -36439080 + B2_Mm2 SINE B2 2 106 -89 5 1232 234 122 0 75 chr12 84818472 84818525 -36439005 + B1F2 SINE Alu 9 57 -92 5 1232 292 254 42 0 chr12 84818562 84818633 -36438897 + ID4 SINE ID 4 77 -6 5 1232 862 284 73 3 chr12 84818896 84819142 -36438388 - ID_B1 SINE B4 -1 291 5 5 1232 1705 31 0 0 chr12 84819245 84819438 -36438092 + B2_Mm1a SINE B2 1 193 0 5 1232 766 277 51 24 chr12 84819696 84819988 -36437542 + L1MB4 LINE L1 5637 5936 -244 5 1232 214 294 44 0 chr12 84820045 84820113 -36437417 - ID4_ SINE ID -1 82 12 5 1232 242 233 53 53 chr12 84820124 84820219 -36437311 + L1MB4 LINE L1 6013 6107 -73 5 1232 706 269 21 0 chr12 84820220 84820361 -36437169 + RSINE1 SINE B4 3 146 -19 5 1232 230 143 0 23 chr12 84820414 84820457 -36437073 + L1MB3 LINE L1 6094 6135 -48 5 1232 223 124 10 73 chr12 84820458 84820529 -36437001 + T-rich Low_complexity Low_complexity 26 91 0 5 1232 1099 89 0 7 chr12 84820529 84820676 -36436854 - B1_Mus1 SINE Alu 0 148 3 5 1232 223 124 10 73 chr12 84820676 84820700 -36436830 + T-rich Low_complexity Low_complexity 3 25 0 5 1232 444 200 309 0 chr12 84820702 84820812 -36436718 - B1_Mus1 SINE Alu 0 148 5 5 1232 188 86 0 28 chr12 84821071 84821107 -36436423 + (TAAAG)n Simple_repeat Simple_repeat 1 35 0 5 1232 878 196 0 0 chr12 84821757 84821900 -36435630 - B1_Mur2 SINE Alu -4 145 3 5 1232 297 0 0 0 chr12 84822399 84822432 -36435098 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1232 396 0 0 0 chr12 84822940 84822984 -36434546 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1232 198 0 0 0 chr12 84822996 84823018 -36434512 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1232 30 0 0 0 chr12 84823534 84823564 -36433966 + AT_rich Low_complexity Low_complexity 1 30 0 5 1232 879 133 15 7 chr12 84823629 84823765 -36433765 + B1_Mur4 SINE Alu 14 150 0 5 1232 301 293 38 81 chr12 84823762 84823802 -36433728 - B2_Mm1t SINE B2 -14 179 139 5 1232 186 43 0 0 chr12 84823802 84823825 -36433705 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1232 535 265 33 9 chr12 84823825 84823948 -36433582 - B3A SINE B2 -50 148 24 5 1232 229 267 103 97 chr12 84823941 84823984 -36433546 - ID_B1 SINE B4 -78 146 1 5 1232 725 88 10 0 chr12 84823984 84824086 -36433444 - B2_Mm1t SINE B2 -90 103 1 5 1232 420 240 116 7 chr12 84824926 84825039 -36432491 + RSINE1 SINE B4 3 123 -42 5 1232 339 25 0 0 chr12 84825039 84825079 -36432451 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1232 420 240 116 7 chr12 84825079 84825112 -36432418 + RSINE1 SINE B4 124 165 0 5 1232 624 187 163 0 chr12 84825124 84825247 -36432283 - B1_Mur2 SINE Alu -1 148 6 5 1232 22 0 0 0 chr12 84826318 84826340 -36431190 + AT_rich Low_complexity Low_complexity 1 22 0 6 1232 432 0 0 0 chr12 84827616 84827664 -36429866 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 6 1232 918 207 53 19 chr12 84830776 84830983 -36426547 + B3 SINE B2 2 215 -1 6 1232 753 43 0 0 chr12 84831092 84831185 -36426345 + (GGGA)n Simple_repeat Simple_repeat 1 93 0 6 1232 417 234 99 0 chr12 84831359 84831470 -36426060 + MER33 DNA MER1_type 27 148 -176 6 1232 242 146 61 20 chr12 84831613 84831662 -36425868 + MurSatRep1 Unknown Unknown 236 286 -1851 6 1232 522 190 39 112 chr12 84831671 84831781 -36425749 + MER33 DNA MER1_type 156 258 -66 6 1232 1154 62 7 0 chr12 84831781 84831927 -36425603 + B1_Mm SINE Alu 1 147 0 6 1232 522 190 39 112 chr12 84831927 84831994 -36425536 + MER33 DNA MER1_type 259 320 -4 6 1232 656 160 184 42 chr12 84832178 84832358 -36425172 + B3 SINE B2 1 189 -6 6 1232 317 316 57 49 chr12 84832490 84832613 -36424917 + PB1 SINE Alu 1 124 -3 6 1232 1008 220 34 0 chr12 84832626 84832835 -36424695 + B3 SINE B2 1 216 0 6 1232 241 338 0 0 chr12 84832861 84832935 -36424595 + ID4_ SINE ID 4 77 -6 6 1232 592 110 0 0 chr12 84833179 84833261 -36424269 + B2_Mm2 SINE B2 1 82 -113 6 1232 256 375 0 0 chr12 84833261 84833275 -36424255 + RSINE1 SINE B4 2 97 -68 6 1232 784 154 49 0 chr12 84833288 84833431 -36424099 + B1_Mur4 SINE Alu 1 150 0 6 1232 755 250 93 0 chr12 84833460 84833664 -36423866 + ID_B1 SINE B4 1 223 -1 6 1232 697 264 0 0 chr12 84833677 84833821 -36423709 + ID_B1 SINE B4 81 224 0 6 1232 356 215 37 104 chr12 84834069 84834102 -36423428 + MT2B LTR ERVL 139 162 -439 6 1232 764 147 81 0 chr12 84834102 84834238 -36423292 + B1_Mus1 SINE Alu 1 147 -1 6 1232 644 240 19 52 chr12 84835571 84835725 -36421805 - B1F SINE Alu 0 149 1 6 1232 597 136 26 26 chr12 84835870 84835983 -36421547 + B1_Mus2 SINE Alu 34 146 -1 6 1232 446 259 74 0 chr12 84836041 84836149 -36421381 + PB1D10 SINE Alu 1 116 -1 6 1232 589 226 0 0 chr12 84837135 84837250 -36420280 + PB1D10 SINE Alu 3 117 0 6 1232 217 247 0 34 chr12 84837250 84837338 -36420192 + A-rich Low_complexity Low_complexity 3 87 0 6 1232 339 314 16 41 chr12 84837429 84837552 -36419978 - B1F SINE Alu -29 120 1 6 1232 1434 45 0 38 chr12 84838146 84838331 -36419199 - B2_Mm2 SINE B2 -17 178 1 6 1232 507 286 8 16 chr12 84838339 84838460 -36419070 - ID_B1 SINE B4 -20 204 85 6 1232 222 37 0 0 chr12 84838515 84838542 -36418988 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1232 1216 48 0 20 chr12 84838542 84838692 -36418838 - B1_Mm SINE Alu 0 147 1 6 1232 686 187 70 21 chr12 84838722 84838864 -36418666 - B1_Mur4 SINE Alu 0 150 2 6 1232 806 205 126 0 chr12 84839009 84839199 -36418331 + B3 SINE B2 2 215 -1 6 1232 290 276 22 22 chr12 84839464 84839553 -36417977 + PB1D10 SINE Alu 29 117 0 6 1232 285 320 107 23 chr12 84839649 84839780 -36417750 + L1MB8 LINE L1 5597 5738 -440 6 1232 1283 21 7 0 chr12 84839781 84839926 -36417604 + B1_Mus2 SINE Alu 2 147 0 6 1232 442 245 65 65 chr12 84840024 84840177 -36417353 + B3A SINE B2 5 157 -41 6 1232 266 0 29 0 chr12 84840181 84840215 -36417315 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1232 516 257 34 41 chr12 84840258 84840404 -36417126 - B1F2 SINE Alu -2 147 3 6 1232 240 304 67 129 chr12 84840404 84840443 -36417087 - B4A SINE B4 -60 205 52 6 1232 800 221 34 82 chr12 84840574 84840781 -36416749 - B3A SINE B2 0 198 2 6 1232 292 287 87 0 chr12 84840826 84840941 -36416589 + L1MB8 LINE L1 6053 6177 -1 6 1232 320 0 25 0 chr12 84840975 84841015 -36416515 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1232 189 0 0 0 chr12 84841070 84841091 -36416439 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1232 253 258 42 178 chr12 84841457 84841575 -36415955 - B1F1 SINE Alu -30 119 18 6 1232 451 272 9 9 chr12 84841645 84841760 -36415770 - PB1D7 SINE Alu -5 115 1 6 1232 290 240 41 0 chr12 84841978 84842059 -36415471 + MIRb SINE MIR 88 171 -91 6 1232 662 314 0 0 chr12 84842094 84842250 -36415280 + RSINE1 SINE B4 5 160 -5 6 1232 1165 58 0 0 chr12 84842282 84842421 -36415109 + B1_Mm SINE Alu 2 140 -7 6 1232 234 0 0 0 chr12 84842421 84842447 -36415083 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1232 320 282 51 0 chr12 84842452 84842530 -36415000 + ID4_ SINE ID 2 83 0 6 1232 659 197 0 6 chr12 84842561 84842740 -36414790 + GA-rich Low_complexity Low_complexity 3 180 0 6 1232 294 29 0 0 chr12 84843028 84843063 -36414467 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1232 563 262 33 0 chr12 84843507 84843629 -36413901 + RSINE1 SINE B4 2 127 -38 6 1232 362 21 0 21 chr12 84843645 84843693 -36413837 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1232 186 43 0 0 chr12 84843709 84843732 -36413798 + (TCTTG)n Simple_repeat Simple_repeat 2 24 0 6 1232 610 176 34 42 chr12 84844784 84844903 -36412627 - B3 SINE B2 -98 118 1 6 1232 567 225 6 164 chr12 84844944 84845006 -36412524 + ID SINE ID 1 43 -181 6 1232 1154 38 0 0 chr12 84845006 84845139 -36412391 + B1_Mus2 SINE Alu 1 133 -14 6 1232 222 37 0 0 chr12 84845139 84845166 -36412364 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 6 1232 567 225 6 164 chr12 84845166 84845209 -36412321 + ID SINE ID 44 80 -144 6 1232 305 227 29 29 chr12 84845209 84845277 -36412253 + PB1 SINE Alu 1 68 -59 6 1232 229 267 18 115 chr12 84845298 84845463 -36412067 - RMER12 LTR ERVK -474 848 700 6 1232 315 0 0 0 chr12 84845484 84845519 -36412011 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1232 628 242 0 22 chr12 84845520 84845655 -36411875 - RSINE1 SINE B4 -15 150 19 6 1232 2886 9 0 3 chr12 84845695 84846026 -36411504 + MT2_Mm LTR ERVL 38 367 -126 6 1232 1697 32 0 40 chr12 84846483 84846710 -36410820 - MT-int LTR MaLR -75 1023 806 6 1232 1413 64 5 0 chr12 84846706 84846893 -36410637 + B2_Mm1a SINE B2 6 193 0 6 1232 228 254 0 17 chr12 84847023 84847083 -36410447 + A-rich Low_complexity Low_complexity 4 62 0 6 1232 1029 221 165 9 chr12 84847578 84847893 -36409637 + ORR1D2 LTR MaLR 4 367 -3 6 1232 1294 35 0 0 chr12 84848027 84848172 -36409358 + B1_Mm SINE Alu 3 147 0 6 1232 240 100 0 0 chr12 84848174 84848214 -36409316 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1232 1148 79 0 0 chr12 84848304 84848444 -36409086 + B1_Mus1 SINE Alu 3 142 -6 6 1232 287 222 22 11 chr12 84849020 84849111 -36408419 - L1ME4a LINE L1 -15 6109 6018 6 1232 529 187 33 0 chr12 84849136 84849227 -36408303 - B1_Mur1 SINE Alu 0 149 56 6 1232 550 58 336 10 chr12 84849226 84849323 -36408207 + B1_Mur4 SINE Alu 7 138 -12 6 1232 180 0 0 0 chr12 84849323 84849343 -36408187 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1232 226 295 66 0 chr12 84849344 84849405 -36408125 - PB1D9 SINE Alu -54 66 2 6 1232 270 0 0 0 chr12 84849421 84849451 -36408079 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 1232 737 149 0 0 chr12 84849528 84849635 -36407895 + B1_Mm SINE Alu 9 115 -32 6 1232 546 16 0 0 chr12 84849635 84849698 -36407832 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1232 333 0 0 0 chr12 84849698 84849734 -36407796 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1232 240 35 0 0 chr12 84849741 84849770 -36407760 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1232 491 204 64 11 chr12 84849771 84849865 -36407665 - RSINE1 SINE B4 -62 103 5 6 1232 1262 41 0 13 chr12 84849897 84850046 -36407484 - B1_Mus1 SINE Alu 0 148 2 6 1232 270 0 0 0 chr12 84850209 84850239 -36407291 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1232 232 370 26 32 chr12 84850244 84850434 -36407096 - L1MC LINE L1 -2083 5799 5611 6 1232 233 262 42 108 chr12 84850650 84850770 -36406760 + RLTR25A LTR ERVK 471 582 -521 6 1232 580 192 0 46 chr12 84850704 84850813 -36406717 + B1F2 SINE Alu 45 148 -1 6 1232 1428 89 5 0 chr12 84850914 84851105 -36406425 - B2_Mm1a SINE B2 -1 192 1 6 1232 1262 74 9 104 chr12 84851117 84851329 -36406201 - B2_Mm1t SINE B2 0 193 2 6 1232 279 335 48 34 chr12 84851349 84851556 -36405974 - L1MC4 LINE L1 -877 7165 6956 6 1232 246 324 76 41 chr12 84851573 84851718 -36405812 - L1MC4 LINE L1 -1181 6861 6712 6 1232 182 37 37 0 chr12 84852049 84852076 -36405454 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 1232 955 169 0 0 chr12 84852077 84852225 -36405305 - B1_Mus1 SINE Alu 0 148 1 6 1232 207 123 12 58 chr12 84852286 84852372 -36405158 + T-rich Low_complexity Low_complexity 4 85 0 6 1232 22 35 0 0 chr12 84852372 84852401 -36405129 + AT_rich Low_complexity Low_complexity 1 29 0 6 1232 774 203 124 25 chr12 84852402 84852604 -36404926 - ID_B1 SINE B4 -1 223 2 6 1232 1248 118 37 16 chr12 84852701 84852891 -36404639 + B2_Mm2 SINE B2 2 195 0 6 1232 1188 87 104 0 chr12 84852913 84853086 -36404444 + B2_Mm2 SINE B2 3 193 -2 6 1232 418 293 48 16 chr12 84853095 84853220 -36404310 + MLT1B LTR MaLR 262 390 0 6 1232 264 100 0 0 chr12 84853673 84853713 -36403817 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1232 212 143 0 0 chr12 84854212 84854247 -36403283 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 6 1232 390 294 72 72 chr12 84854335 84854529 -36403001 - MIRb SINE MIR -21 247 54 6 1232 474 269 63 91 chr12 84854615 84854758 -36402772 - RSINE1 SINE B4 -17 148 10 6 1232 378 0 0 0 chr12 84854781 84854823 -36402707 + (CTG)n Simple_repeat Simple_repeat 2 43 0 6 1232 1058 95 0 0 chr12 84854823 84854960 -36402570 - B1_Mus1 SINE Alu -10 138 2 7 1232 1026 152 0 0 chr12 84854960 84855137 -36402393 + CT-rich Low_complexity Low_complexity 1 177 0 7 1232 349 255 32 0 chr12 84855147 84855241 -36402289 - ID_B1 SINE B4 -7 217 121 7 1232 438 307 46 20 chr12 84855319 84855515 -36402015 + L1MC4 LINE L1 6744 6944 -1098 7 1232 506 266 0 0 chr12 84855694 84855803 -36401727 - PB1D10 SINE Alu 0 117 9 7 1232 477 263 13 116 chr12 84855720 84855875 -36401655 - ID_B1 SINE B4 -52 172 34 7 1232 488 284 34 17 chr12 84855918 84856036 -36401494 + PB1D7 SINE Alu 1 120 0 7 1232 21 0 0 0 chr12 84856141 84856162 -36401368 + AT_rich Low_complexity Low_complexity 1 21 0 7 1232 1584 33 0 6 chr12 84856175 84856358 -36401172 - B2_Mm2 SINE B2 -12 183 2 7 1232 27 0 0 0 chr12 84856358 84856385 -36401145 + AT_rich Low_complexity Low_complexity 1 27 0 7 1232 444 82 0 0 chr12 84856747 84856808 -36400722 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 7 1232 216 276 35 0 chr12 84856827 84856885 -36400645 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1232 2874 12 3 0 chr12 84857368 84857689 -36399841 - RLTRETN_Mm LTR ERVK 0 322 1 7 1232 692 263 41 6 chr12 84857762 84857934 -36399596 - B4 SINE B4 -114 178 1 7 1232 180 0 0 0 chr12 84857938 84857958 -36399572 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1232 1008 141 0 7 chr12 84858035 84858185 -36399345 - B1_Mur4 SINE Alu -1 149 1 7 1232 667 183 16 23 chr12 84858205 84858334 -36399196 - B3 SINE B2 0 216 89 7 1232 234 0 0 0 chr12 84858445 84858471 -36399059 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1232 2727 149 57 49 chr12 84858620 84859112 -36398418 + RMER5 LTR ERV1 15 518 -16 7 1232 1438 79 16 11 chr12 84859112 84859303 -36398227 + B2_Mm2 SINE B2 1 192 -3 7 1232 2727 149 57 49 chr12 84859303 84859319 -36398211 + RMER5 LTR ERV1 519 527 -7 7 1232 451 154 77 0 chr12 84859549 84859627 -36397903 - B3 SINE B2 -127 89 6 7 1232 853 43 0 87 chr12 84859655 84859666 -36397864 - B1_Mm SINE Alu 0 147 139 7 1232 207 0 0 0 chr12 84859666 84859689 -36397841 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 1232 853 43 0 87 chr12 84859689 84859804 -36397726 - B1_Mm SINE Alu -9 138 32 7 1232 234 0 0 0 chr12 84859829 84859855 -36397675 + (TGG)n Simple_repeat Simple_repeat 1 26 0 7 1232 308 279 71 20 chr12 84860935 84861061 -36396469 - MIR3 SINE MIR -24 184 54 7 1232 883 34 25 25 chr12 84861869 84861990 -36395540 - B1_Mus1 SINE Alu 0 148 28 7 1232 650 244 129 11 chr12 84862013 84862191 -36395339 - B3 SINE B2 -7 209 11 7 1232 455 202 236 42 chr12 84862217 84862382 -36395148 - B3A SINE B2 0 198 2 7 1232 192 256 47 93 chr12 84862408 84862494 -36395036 - MIRb SINE MIR -147 121 40 7 1232 1601 36 0 25 chr12 84862960 84863158 -36394372 - B2_Mm1t SINE B2 0 193 1 7 1232 1211 54 0 13 chr12 84863176 84863325 -36394205 - B1_Mm SINE Alu 0 147 1 7 1232 390 129 0 0 chr12 84863365 84863427 -36394103 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1232 719 242 19 13 chr12 84863432 84863591 -36393939 - B3A SINE B2 -38 160 1 7 1232 310 311 117 39 chr12 84863834 84863988 -36393542 - B4 SINE B4 -4 288 123 7 1232 1172 50 0 14 chr12 84864526 84864669 -36392861 - B1_Mm SINE Alu -6 141 1 7 1232 368 260 76 8 chr12 84865000 84865132 -36392398 - ID_B1 SINE B4 -32 192 52 7 1232 633 101 0 0 chr12 84865393 84865482 -36392048 + B2_Mm2 SINE B2 61 149 -46 7 1232 215 254 0 78 chr12 84865556 84865633 -36391897 + BC1_Mm scRNA scRNA 24 94 -58 7 1232 456 254 53 23 chr12 84865801 84865934 -36391596 - ID_B1 SINE B4 -1 223 87 7 1232 726 210 27 64 chr12 84866136 84866324 -36391206 - B3A SINE B2 -16 182 2 7 1232 1184 62 7 0 chr12 84866706 84866851 -36390679 + B1_Mm SINE Alu 2 147 0 7 1232 995 97 13 33 chr12 84867438 84867588 -36389942 - B1_Mus2 SINE Alu 0 147 1 7 1232 373 207 0 121 chr12 84867623 84867722 -36389808 - B1_Mur2 SINE Alu 0 149 63 7 1232 1239 55 0 0 chr12 84867859 84868005 -36389525 - B1_Mus2 SINE Alu 0 147 2 7 1232 278 293 0 8 chr12 84868240 84868374 -36389156 + (TG)n Simple_repeat Simple_repeat 2 134 0 7 1232 731 252 32 0 chr12 84868378 84868533 -36388997 - RSINE1 SINE B4 -3 162 3 7 1232 236 214 84 14 chr12 84868605 84868676 -36388854 + RSINE1 SINE B4 83 158 -7 7 1232 21 0 0 0 chr12 84868676 84868697 -36388833 + AT_rich Low_complexity Low_complexity 1 21 0 7 1232 210 296 0 0 chr12 84869703 84869747 -36387783 + polypurine Low_complexity Low_complexity 4 47 0 7 1232 723 249 97 10 chr12 84869847 84870042 -36387488 + B4 SINE B4 8 219 -73 7 1232 1516 77 0 5 chr12 84870370 84870565 -36386965 - B2_Mm2 SINE B2 0 195 2 7 1232 186 71 0 0 chr12 84870759 84870787 -36386743 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1232 351 43 0 0 chr12 84870787 84870834 -36386696 - B1_Mm SINE Alu 0 147 101 7 1232 180 0 0 0 chr12 84870875 84870895 -36386635 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1232 496 288 50 0 chr12 84871546 84871685 -36385845 - ID_B1 SINE B4 0 224 79 7 1232 498 33 0 0 chr12 84871698 84871758 -36385772 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 7 1232 291 54 0 0 chr12 84872358 84872395 -36385135 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1232 199 285 73 14 chr12 84872546 84872618 -36384912 - MIR SINE MIR -125 151 80 7 1232 197 179 86 35 chr12 84872849 84872907 -36384623 + MIR SINE MIR 74 134 -74 7 1232 241 242 88 108 chr12 84873056 84873204 -36384326 - B1F SINE Alu 0 149 5 7 1232 357 24 0 0 chr12 84873475 84873517 -36384013 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1232 270 0 0 0 chr12 84874268 84874298 -36383232 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1232 380 224 80 34 chr12 84874407 84874495 -36383035 - PB1D7 SINE Alu -7 113 22 7 1232 531 82 0 0 chr12 84875502 84875575 -36381955 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 7 1232 211 291 279 16 chr12 84875594 84875658 -36381872 - RSINE1 SINE B4 -1 164 2 7 1232 407 123 154 0 chr12 84875658 84875723 -36381807 - B3A SINE B2 -123 75 1 7 1232 2867 152 36 111 chr12 84877431 84877749 -36379781 - RLTR31_Mm LTR ERVK 0 561 269 7 1232 1245 41 0 0 chr12 84877749 84877895 -36379635 + B1_Mus2 SINE Alu 2 147 0 7 1232 2867 152 36 111 chr12 84877895 84878182 -36379348 - RLTR31_Mm LTR ERVK -293 268 1 7 1232 473 271 20 48 chr12 84878389 84878536 -36378994 - MLT1A LTR MaLR -212 162 20 7 1232 225 0 0 0 chr12 84879128 84879153 -36378377 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 7 1232 586 248 20 14 chr12 84879179 84879326 -36378204 - B1F1 SINE Alu 0 149 2 7 1232 744 139 12 111 chr12 84879964 84880112 -36377418 + B1_Mur3 SINE Alu 3 136 -13 7 1232 207 0 0 0 chr12 84880112 84880135 -36377395 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 7 1232 744 139 12 111 chr12 84880135 84880148 -36377382 + B1_Mur3 SINE Alu 137 148 -1 7 1232 741 199 206 16 chr12 84882001 84882190 -36375340 - URR1B DNA MER1_type 0 225 1 7 1232 1136 160 29 10 chr12 84882644 84882852 -36374678 + B3 SINE B2 1 212 -4 7 1232 28 29 0 0 chr12 84883401 84883436 -36374094 + AT_rich Low_complexity Low_complexity 1 35 0 7 1232 1195 57 0 0 chr12 84883471 84883612 -36373918 + B1_Mus1 SINE Alu 1 141 -7 7 1232 240 59 0 0 chr12 84883612 84883646 -36373884 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 7 1232 1110 98 52 57 chr12 84883651 84883845 -36373685 + B2_Mm2 SINE B2 2 194 -1 7 1232 724 103 30 0 chr12 84883902 84884025 -36373505 - B1_Mus2 SINE Alu -6 143 2 7 1232 403 243 156 78 chr12 84884025 84884091 -36373439 - ID_B1 SINE B4 -3 218 15 7 1232 342 0 0 0 chr12 84884190 84884228 -36373302 + (TCCA)n Simple_repeat Simple_repeat 2 39 0 7 1232 1141 100 12 0 chr12 84885432 84885592 -36371938 + B2_Mm1t SINE B2 17 178 -15 7 1232 189 0 0 0 chr12 84886069 84886090 -36371440 + (TCCCC)n Simple_repeat Simple_repeat 1 21 0 7 1232 475 54 40 0 chr12 84886380 84886454 -36371076 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 7 1232 513 243 28 0 chr12 84886980 84887017 -36370513 + ID SINE ID 44 83 -141 7 1232 280 323 21 31 chr12 84887017 84887113 -36370417 + PB1D10 SINE Alu 1 95 -22 7 1232 365 307 7 22 chr12 84887171 84887277 -36370253 + PB1 SINE Alu 3 87 -40 7 1232 24 0 0 0 chr12 84887346 84887370 -36370160 + AT_rich Low_complexity Low_complexity 1 24 0 7 1232 198 0 0 0 chr12 84887807 84887829 -36369701 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 7 1232 45 0 0 0 chr12 84887896 84887941 -36369589 + AT_rich Low_complexity Low_complexity 1 45 0 7 1232 707 232 117 16 chr12 84889202 84889390 -36368140 - ID_B1 SINE B4 -6 218 12 7 1232 377 311 82 22 chr12 84889392 84889527 -36368003 - RSINE1 SINE B4 -15 150 8 7 1232 445 229 90 113 chr12 84889522 84889655 -36367875 + RSINE1 SINE B4 36 165 0 7 1232 218 212 120 77 chr12 84889786 84889911 -36367619 + MIR SINE MIR 17 139 -129 7 1232 231 67 0 0 chr12 84889966 84889996 -36367534 + B3A SINE B2 9 38 -160 7 1232 674 142 74 16 chr12 84890000 84890122 -36367408 + B1_Mus1 SINE Alu 1 129 -19 7 1232 226 264 216 67 chr12 84890565 84890699 -36366831 + RSINE1 SINE B4 4 157 -8 7 1232 210 171 0 0 chr12 84890862 84890903 -36366627 + C-rich Low_complexity Low_complexity 4 44 0 7 1232 438 197 217 0 chr12 84890929 84891037 -36366493 - B1_Mur1 SINE Alu -1 149 11 7 1232 663 279 32 91 chr12 84891070 84891291 -36366239 - B3A SINE B2 -6 210 3 7 1232 1249 21 14 0 chr12 84892765 84892910 -36364620 + B1_Mm SINE Alu 1 147 0 7 1232 290 289 74 32 chr12 84894943 84895054 -36362476 + PB1D10 SINE Alu 1 112 -5 8 1232 545 274 9 0 chr12 84895101 84895214 -36362316 + RSINE1 SINE B4 12 125 -40 8 1232 321 68 0 0 chr12 84895214 84895258 -36362272 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1232 563 219 0 13 chr12 84895439 84895558 -36361972 + PB1 SINE Alu 10 116 -1 8 1232 286 232 78 69 chr12 84897109 84897211 -36360319 + ORR1D1 LTR MaLR 1 103 -271 8 1232 1514 241 106 30 chr12 84897195 84897665 -36359865 + RLTR20B3 LTR ERVK 12 517 -60 8 1232 1263 158 108 77 chr12 84897684 84897971 -36359559 + ORR1D1 LTR MaLR 79 374 0 8 1232 307 371 112 0 chr12 84898583 84898753 -36358777 + MER5A DNA MER1_type 1 189 0 8 1232 338 262 82 34 chr12 84898772 84898918 -36358612 + MER5A1 DNA MER1_type 13 165 -1 8 1232 413 222 21 62 chr12 84899339 84899435 -36358095 - RSINE1 SINE B4 -70 95 4 8 1232 413 257 57 0 chr12 84900559 84900578 -36356952 - PB1D10 SINE Alu -4 113 3 8 1232 418 221 35 0 chr12 84900578 84900664 -36356866 - ID_B1 SINE B4 -52 172 84 8 1232 720 121 131 41 chr12 84900671 84900845 -36356685 + MTC LTR MaLR 189 391 -30 8 1232 1591 42 11 0 chr12 84900845 84901035 -36356495 - B2_Mm1a SINE B2 0 193 2 8 1232 669 134 115 99 chr12 84901035 84901064 -36356466 + MTC LTR MaLR 389 411 -8 8 1232 1864 195 70 123 chr12 84901207 84901751 -36355779 + MT2A LTR ERVL 11 525 -8 8 1232 400 198 208 0 chr12 84902068 84902169 -36355361 + ID_B1 SINE B4 98 219 -5 8 1232 278 331 40 0 chr12 84902411 84902535 -36354995 - ID_B1 SINE B4 0 224 96 8 1232 601 157 232 80 chr12 84902690 84902815 -36354715 + PB1D9 SINE Alu 3 146 -2 8 1232 270 259 0 0 chr12 84904098 84904156 -36353374 + ID4 SINE ID 26 83 0 8 1232 609 195 96 16 chr12 84904173 84904298 -36353232 + B1_Mur1 SINE Alu 2 136 -13 8 1232 414 115 44 133 chr12 84904298 84904350 -36353180 - ORR1A3 LTR MaLR -1 325 285 8 1232 1600 37 0 21 chr12 84904350 84904543 -36352987 - B2_Mm1a SINE B2 -4 189 1 8 1232 414 115 44 133 chr12 84904543 84904572 -36352958 - ORR1A3 LTR MaLR -42 284 252 8 1232 1047 79 7 0 chr12 84904572 84904712 -36352818 + B2_Mm1t SINE B2 2 142 -51 8 1232 1020 55 0 0 chr12 84904710 84904837 -36352693 + B1_Mm SINE Alu 21 147 0 8 1232 209 108 0 26 chr12 84904860 84904898 -36352632 + (GGA)n Simple_repeat Simple_repeat 3 39 0 8 1232 398 182 0 0 chr12 84904898 84904964 -36352566 + B1_Mus1 SINE Alu 5 70 -78 8 1232 692 261 7 0 chr12 84904962 84905104 -36352426 - ID_B1 SINE B4 0 224 82 8 1232 594 221 0 80 chr12 84905134 84905289 -36352241 - B1F2 SINE Alu 0 149 6 8 1232 230 214 157 46 chr12 84905720 84905828 -36351702 + PB1D7 SINE Alu 1 120 0 8 1232 729 150 108 43 chr12 84906336 84906475 -36351055 + B1_Mus1 SINE Alu 1 148 0 8 1232 527 261 8 16 chr12 84906510 84906631 -36350899 + ID_B1 SINE B4 87 206 -18 8 1232 422 266 80 35 chr12 84906710 84906823 -36350707 - B1F SINE Alu -12 137 20 8 1232 282 303 84 69 chr12 84906823 84906841 -36350689 - ID_B1 SINE B4 -12 212 80 8 1232 1043 106 0 7 chr12 84907284 84907427 -36350103 - B1_Mm SINE Alu -5 142 1 8 1232 583 271 63 25 chr12 84907475 84907634 -36349896 - RSINE1 SINE B4 0 165 1 8 1232 2355 118 79 23 chr12 84907830 84908222 -36349308 + RLTR13D6 LTR ERVK 1 414 -488 8 1232 897 109 7 55 chr12 84908300 84908445 -36349085 + B1_Mus2 SINE Alu 1 138 -9 8 1232 747 219 29 0 chr12 84908473 84908610 -36348920 + B1_Mur2 SINE Alu 2 142 -7 8 1232 1030 182 14 41 chr12 84908612 84908830 -36348700 + B3 SINE B2 1 212 -4 8 1232 730 179 97 0 chr12 84909102 84909236 -36348294 - B1_Mur1 SINE Alu 0 149 3 8 1232 620 243 89 31 chr12 84909423 84909614 -36347916 - ID_B1 SINE B4 -20 204 3 8 1232 389 301 21 0 chr12 84911094 84911187 -36346343 - MTD LTR MaLR -211 208 114 8 1232 626 264 109 6 chr12 84911195 84911378 -36346152 + B3 SINE B2 1 202 -14 8 1232 281 121 28 194 chr12 84911409 84911481 -36346049 + B3 SINE B2 1 60 -156 8 1232 234 81 0 0 chr12 84911878 84911915 -36345615 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1232 1398 41 59 0 chr12 84912340 84912510 -36345020 + B2_Mm2 SINE B2 1 180 -15 8 1232 204 67 0 0 chr12 84912511 84912541 -36344989 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 1232 204 347 50 105 chr12 84912845 84913064 -36344466 - L2a LINE L2 -35 3391 3134 8 1232 291 299 0 0 chr12 84913170 84913247 -36344283 + (CA)n Simple_repeat Simple_repeat 2 78 0 8 1232 206 32 32 0 chr12 84913353 84913384 -36344146 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 8 1232 1178 51 0 0 chr12 84913385 84913522 -36344008 - B1_Mus2 SINE Alu -10 137 1 8 1232 440 292 38 0 chr12 84913530 84913636 -36343894 - PB1D10 SINE Alu -7 110 1 8 1232 217 143 0 0 chr12 84914373 84914408 -36343122 - B1_Mm SINE Alu -47 100 66 8 1232 354 61 0 0 chr12 84914441 84914490 -36343040 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 8 1232 216 0 0 0 chr12 84914492 84914516 -36343014 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 8 1232 380 88 35 0 chr12 84914539 84914596 -36342934 + B1_Mus1 SINE Alu 2 60 -88 8 1232 288 200 0 15 chr12 84914547 84914613 -36342917 + ID_B1 SINE B4 90 154 -70 8 1232 284 128 55 143 chr12 84914615 84914706 -36342824 + RLTR25B LTR ERVK 427 509 -519 8 1232 658 136 0 10 chr12 84914641 84914745 -36342785 + B1_Mus2 SINE Alu 40 142 -5 8 1232 312 27 0 0 chr12 84914749 84914786 -36342744 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 8 1232 1489 45 0 11 chr12 84914786 84914966 -36342564 - B2_Mm2 SINE B2 -17 178 1 8 1232 192 77 0 0 chr12 84915168 84915194 -36342336 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1232 271 337 48 19 chr12 84915194 84915297 -36342233 - PB1D9 SINE Alu -11 109 4 8 1232 28 0 0 0 chr12 84915299 84915327 -36342203 + AT_rich Low_complexity Low_complexity 1 28 0 8 1232 1735 21 0 0 chr12 84916161 84916353 -36341177 + B2_Mm1a SINE B2 2 193 0 8 1232 712 273 15 70 chr12 84916519 84916720 -36340810 + B3A SINE B2 6 195 -3 8 1232 245 172 203 0 chr12 84916726 84916790 -36340740 + L1MB7 LINE L1 5016 5092 -1054 8 1232 892 244 17 0 chr12 84916857 84917033 -36340497 + B3 SINE B2 2 180 -36 8 1232 363 221 0 0 chr12 84917035 84917121 -36340409 + (TA)n Simple_repeat Simple_repeat 1 86 0 8 1232 21 0 0 0 chr12 84917131 84917152 -36340378 + AT_rich Low_complexity Low_complexity 1 21 0 8 1232 1138 88 0 0 chr12 84917171 84917318 -36340212 + B1_Mus2 SINE Alu 1 147 0 8 1232 628 292 24 16 chr12 84917321 84917555 -36339975 + L1MB7 LINE L1 5593 5825 -349 8 1232 188 135 0 26 chr12 84917944 84917982 -36339548 + CT-rich Low_complexity Low_complexity 3 39 0 8 1232 846 196 96 25 chr12 84918084 84918130 -36339400 - B3 SINE B2 -3 213 164 8 1232 333 0 0 0 chr12 84918130 84918167 -36339363 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1232 846 196 96 25 chr12 84918167 84918319 -36339211 - B3 SINE B2 -53 163 1 8 1232 327 289 30 40 chr12 84918357 84918458 -36339072 - RSINE1 SINE B4 0 165 66 8 1232 432 53 0 0 chr12 84918444 84918510 -36339020 + B1_Mur4 SINE Alu 55 150 0 8 1232 186 103 0 0 chr12 84918510 84918539 -36338991 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 8 1232 668 175 57 28 chr12 84918608 84918749 -36338781 + B1_Mur2 SINE Alu 4 148 -1 8 1232 329 270 15 115 chr12 84919064 84919194 -36338336 + PB1D10 SINE Alu 1 117 0 8 1232 490 137 0 38 chr12 84919681 84919816 -36337714 + L1_Mus3 LINE L1 6536 6638 0 8 1232 212 222 45 60 chr12 84919852 84919919 -36337611 + B1F1 SINE Alu 84 149 0 8 1232 558 198 0 19 chr12 84920554 84920657 -36336873 + PB1D9 SINE Alu 9 109 -11 8 1232 215 188 0 0 chr12 84920681 84920713 -36336817 + RSINE1 SINE B4 23 54 -111 8 1232 688 145 17 17 chr12 84920771 84920890 -36336640 + PB1D9 SINE Alu 2 120 0 8 1232 253 266 161 20 chr12 84920984 84921122 -36336408 + B2_Mm2 SINE B2 7 172 -26 8 1232 762 235 52 31 chr12 84922156 84922349 -36335181 + B3A SINE B2 2 198 0 8 1232 21 36 0 0 chr12 84922349 84922377 -36335153 + AT_rich Low_complexity Low_complexity 1 28 0 8 1232 335 234 153 56 chr12 84922377 84922545 -36334985 + B3 SINE B2 2 187 -8 8 1232 914 160 217 0 chr12 84922705 84922880 -36334650 + B3 SINE B2 4 216 0 8 1232 220 211 0 0 chr12 84923669 84923707 -36333823 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 8 1232 180 268 95 76 chr12 84923993 84924098 -36333432 + MIRc SINE MIR 43 149 -119 8 1232 453 65 9 12 chr12 84924122 84924235 -36333295 - B2_Mm2 SINE B2 -1 194 47 8 1232 1178 89 54 0 chr12 84924264 84924432 -36333098 - B2_Mm1a SINE B2 -15 178 2 8 1232 626 241 146 12 chr12 84924452 84924616 -36332914 + MTEa LTR MaLR 1 186 -193 8 1232 342 0 0 0 chr12 84924644 84924682 -36332848 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 1232 189 107 0 0 chr12 84924682 84924709 -36332821 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1232 189 0 0 0 chr12 84924853 84924874 -36332656 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 8 1232 379 239 127 36 chr12 84925195 84925336 -36332194 + L1ME3B LINE L1 5751 5908 -271 8 1232 351 305 0 0 chr12 84925585 84925667 -36331863 + ID4 SINE ID 2 83 0 8 1232 565 226 105 0 chr12 84926478 84926602 -36330928 + B1_Mur1 SINE Alu 13 149 0 8 1232 477 223 208 0 chr12 84926612 84926742 -36330788 + RSINE1 SINE B4 5 161 -4 8 1232 918 183 200 0 chr12 84926761 84926941 -36330589 + B3 SINE B2 1 216 0 9 1232 21 0 0 0 chr12 84926945 84926966 -36330564 + AT_rich Low_complexity Low_complexity 1 21 0 9 1232 204 40 0 0 chr12 84926967 84926992 -36330538 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1232 403 303 107 17 chr12 84927011 84927189 -36330341 + ID_B1 SINE B4 2 195 -29 9 1232 1218 49 0 0 chr12 84927296 84927440 -36330090 + B1_Mus1 SINE Alu 5 148 0 9 1232 226 0 0 56 chr12 84927440 84927476 -36330054 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 9 1232 1428 38 46 56 chr12 84927869 84928064 -36329466 + B2_Mm1t SINE B2 1 193 0 9 1232 417 236 264 13 chr12 84929170 84929329 -36328201 + B3 SINE B2 1 199 -17 9 1232 1062 281 68 52 chr12 84929917 84930313 -36327217 + MLT1D LTR MaLR 1 396 -109 9 1232 1352 81 32 0 chr12 84930313 84930498 -36327032 - B2_Mm2 SINE B2 -4 191 1 9 1232 1062 281 68 52 chr12 84930498 84930541 -36326989 + MLT1D LTR MaLR 397 446 -59 9 1232 1129 49 0 0 chr12 84930555 84930697 -36326833 + B1_Mus1 SINE Alu 7 148 0 9 1232 1633 37 5 0 chr12 84931190 84931381 -36326149 + B2_Mm1a SINE B2 2 193 0 9 1232 284 250 0 141 chr12 84931382 84931503 -36326027 + MT2B LTR ERVL 155 258 -343 9 1232 537 124 186 24 chr12 84931401 84931525 -36326005 + B1_Mur3 SINE Alu 6 149 0 9 1232 376 320 10 0 chr12 84931550 84931647 -36325883 + PB1D10 SINE Alu 11 108 -9 9 1232 435 284 128 26 chr12 84931656 84931851 -36325679 + B3 SINE B2 1 215 -1 9 1232 248 314 94 55 chr12 84931851 84931872 -36325658 + ID_B1 SINE B4 205 223 -1 9 1232 180 0 0 0 chr12 84931872 84931892 -36325638 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1232 231 36 0 0 chr12 84932025 84932053 -36325477 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 9 1232 822 185 0 0 chr12 84932109 84932239 -36325291 - B3 SINE B2 -86 130 1 9 1232 650 231 18 43 chr12 84932348 84932511 -36325019 + ID_B1 SINE B4 2 160 -64 9 1232 392 259 168 77 chr12 84932534 84932689 -36324841 + B4A SINE B4 124 292 0 9 1232 429 298 88 0 chr12 84933406 84933520 -36324010 + RSINE1 SINE B4 29 152 -13 9 1232 216 303 0 121 chr12 84933572 84933590 -36323940 + ID SINE ID 68 70 -154 9 1232 388 212 151 28 chr12 84933590 84933743 -36323787 + B1_Mus1 SINE Alu 1 149 0 9 1232 559 92 81 0 chr12 84933768 84933855 -36323675 + B2_Mm2 SINE B2 99 192 -3 9 1232 1182 51 0 0 chr12 84933862 84934000 -36323530 + B1_Mus1 SINE Alu 2 139 -9 9 1232 657 241 41 36 chr12 84934170 84934364 -36323166 - B3A SINE B2 -1 197 3 9 1232 487 216 0 47 chr12 84934533 84934640 -36322890 + MLT1A1 LTR MaLR 305 406 -2 9 1233 343 241 8 114 chr12 84934809 84934940 -36322590 - MIR3 SINE MIR -17 191 75 9 1233 526 181 11 11 chr12 84934958 84935053 -36322477 + PB1D10 SINE Alu 23 117 0 9 1233 573 212 62 0 chr12 84935069 84935182 -36322348 + PB1D7 SINE Alu 1 120 0 9 1233 658 110 237 0 chr12 84936483 84936601 -36320929 + B1_Mus2 SINE Alu 2 147 0 9 1233 261 83 0 0 chr12 84936601 84936637 -36320893 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1233 522 111 0 0 chr12 84936685 84936766 -36320764 + PB1D9 SINE Alu 31 111 -9 9 1233 187 333 93 0 chr12 84938911 84938986 -36318544 + MIR3 SINE MIR 120 201 -7 9 1233 262 243 103 3 chr12 84938977 84939096 -36318434 - MIR SINE MIR -111 151 31 9 1233 323 257 14 0 chr12 84939503 84939573 -36317957 + ID4_ SINE ID 12 82 -1 9 1233 698 264 19 106 chr12 84939664 84939732 -36317798 - B4 SINE B4 -15 277 211 9 1233 264 59 0 0 chr12 84939732 84939766 -36317764 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 9 1233 698 264 19 106 chr12 84939766 84939905 -36317625 - B4 SINE B4 -82 210 88 9 1233 1917 153 127 8 chr12 84939970 84940339 -36317191 - MTC LTR MaLR -8 413 1 9 1233 720 301 28 84 chr12 84940341 84940627 -36316903 - MT2A LTR ERVL -85 448 179 9 1233 512 264 0 167 chr12 84940744 84940800 -36316730 + B1_Mur1 SINE Alu 1 50 -99 9 1233 1000 82 7 15 chr12 84940800 84940936 -36316594 + B1_Mm SINE Alu 1 135 -12 9 1233 512 264 0 167 chr12 84940936 84941047 -36316483 + B1_Mur1 SINE Alu 51 140 -9 9 1233 1215 96 85 0 chr12 84941226 84941403 -36316127 + B2_Mm1t SINE B2 2 193 0 9 1233 399 311 0 0 chr12 84941480 84941599 -36315931 + (CGTG)n Simple_repeat Simple_repeat 1 119 0 9 1233 445 239 109 22 chr12 84941600 84941784 -36315746 - B3 SINE B2 -16 200 1 9 1233 222 22 64 43 chr12 84941993 84942040 -36315490 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 9 1233 1124 69 7 7 chr12 84942041 84942187 -36315343 - B1_Mus1 SINE Alu -1 147 2 9 1233 180 0 0 0 chr12 84942447 84942467 -36315063 + (ATG)n Simple_repeat Simple_repeat 2 21 0 9 1233 1132 95 0 0 chr12 84942502 84942649 -36314881 + B1_Mus2 SINE Alu 1 147 0 9 1233 268 253 275 0 chr12 84942703 84942792 -36314738 - B3 SINE B2 -13 203 90 9 1233 2275 195 68 60 chr12 84942792 84943184 -36314346 - RLTR20B2 LTR ERVK 0 560 178 9 1233 1159 61 0 7 chr12 84943184 84943333 -36314197 - B1_Mus1 SINE Alu 0 148 1 9 1233 2275 195 68 60 chr12 84943333 84943495 -36314035 - RLTR20B2 LTR ERVK -383 177 1 9 1233 309 318 91 0 chr12 84943495 84943580 -36313950 - B3 SINE B2 -123 93 1 9 1233 448 224 214 44 chr12 84943604 84943763 -36313767 + B2_Mm2 SINE B2 1 186 -9 9 1233 216 129 0 0 chr12 84943856 84943887 -36313643 - RSINE1 SINE B4 -53 112 82 9 1233 1608 53 27 0 chr12 84943887 84944075 -36313455 - B2_Mm1t SINE B2 0 193 1 9 1233 1397 90 21 26 chr12 84944078 84944272 -36313258 - B2_Mm2 SINE B2 -2 193 1 9 1233 1063 232 84 98 chr12 84944309 84944667 -36312863 - ORR1D2 LTR MaLR -2 377 15 9 1233 369 0 0 0 chr12 84944672 84944713 -36312817 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1233 279 283 53 32 chr12 84944773 84944868 -36312662 - MamRep605 Unknown Unknown -105 771 675 9 1233 1548 34 45 0 chr12 84944868 84945045 -36312485 - B2_Mm1a SINE B2 -7 186 2 9 1233 552 68 0 0 chr12 84945160 84945233 -36312297 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 1233 409 264 26 78 chr12 84945246 84945361 -36312169 - PB1D10 SINE Alu -8 109 1 9 1233 2113 157 13 32 chr12 84945683 84946058 -36311472 + RLTR14 LTR ERV1 15 382 0 9 1233 790 156 62 21 chr12 84946321 84946465 -36311065 - B1_Mur4 SINE Alu 0 150 1 9 1233 1425 91 27 0 chr12 84946572 84946759 -36310771 + B2_Mm1t SINE B2 1 192 -1 9 1233 868 120 98 0 chr12 84946766 84946899 -36310631 + B2_Mm2 SINE B2 2 147 -48 9 1233 1085 65 0 0 chr12 84946907 84947046 -36310484 + B1_Mus2 SINE Alu 9 147 0 9 1233 189 94 0 0 chr12 84947047 84947079 -36310451 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1233 276 295 222 32 chr12 84947080 84947206 -36310324 + B4A SINE B4 54 203 -89 9 1233 2514 134 18 20 chr12 84947206 84947649 -36309881 - RLTR11B LTR ERVK 0 453 12 9 1233 1059 79 0 0 chr12 84947649 84947789 -36309741 + B1_Mus1 SINE Alu 8 147 -1 9 1233 222 37 0 0 chr12 84947790 84947817 -36309713 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 9 1233 4136 211 64 62 chr12 84947852 84948035 -36309495 - MYSERV-int LTR ERVK -3 6547 6420 9 1233 1206 68 0 33 chr12 84948035 84948186 -36309344 - B1_Mm SINE Alu 0 147 2 9 1233 4136 211 64 62 chr12 84948186 84949163 -36308367 - MYSERV-int LTR ERVK -131 6419 5385 9 1233 372 312 57 108 chr12 84949174 84949332 -36308198 + RSINE1 SINE B4 12 161 -4 9 1233 358 227 88 33 chr12 84949386 84949477 -36308053 + B1_Mur2 SINE Alu 32 127 -22 9 1233 195 42 0 0 chr12 84949486 84949510 -36308020 + (CAA)n Simple_repeat Simple_repeat 3 26 0 9 1233 729 237 35 64 chr12 84949540 84949743 -36307787 + B3A SINE B2 1 197 -1 9 1233 1280 68 0 0 chr12 84949750 84949898 -36307632 + B1_Mus1 SINE Alu 1 148 0 9 1233 40 0 0 0 chr12 84949898 84949938 -36307592 + AT_rich Low_complexity Low_complexity 1 40 0 9 1233 1467 74 5 26 chr12 84949940 84950113 -36307417 + B2_Mm1t SINE B2 2 172 -21 9 1233 1249 62 0 0 chr12 84950113 84950257 -36307273 + B1_Mm SINE Alu 2 145 -2 9 1233 1467 74 5 26 chr12 84950257 84950277 -36307253 + B2_Mm1t SINE B2 173 191 -2 9 1233 781 159 6 121 chr12 84950280 84950445 -36307085 + B1_Mus2 SINE Alu 1 146 -1 9 1233 360 0 0 0 chr12 84950461 84950501 -36307029 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1233 376 317 170 14 chr12 84950506 84950653 -36306877 - B3 SINE B2 -46 170 1 9 1233 271 190 15 29 chr12 84950788 84950868 -36306662 + B1_Mur4 SINE Alu 33 140 -10 9 1233 1257 48 0 26 chr12 84950945 84951096 -36306434 + B1_Mus2 SINE Alu 1 147 0 9 1233 656 261 27 38 chr12 84951120 84951303 -36306227 + B3A SINE B2 18 198 0 9 1233 499 299 14 36 chr12 84951460 84951599 -36305931 - RSINE1 SINE B4 -15 150 15 9 1233 328 272 92 50 chr12 84951618 84951738 -36305792 - PB1 SINE Alu -2 125 1 9 1233 287 309 255 0 chr12 84951903 84951997 -36305533 + ID_B1 SINE B4 77 194 -30 9 1233 254 258 0 75 chr12 84951947 84952014 -36305516 + B1F1 SINE Alu 67 128 -21 9 1233 545 306 25 0 chr12 84952083 84952240 -36305290 + RSINE1 SINE B4 3 163 -2 9 1233 225 119 0 0 chr12 84952361 84952403 -36305127 + (T)n Simple_repeat Simple_repeat 1 42 0 9 1233 1261 61 0 0 chr12 84952403 84952551 -36304979 - B1_Mus1 SINE Alu 0 148 1 9 1233 256 0 24 49 chr12 84952574 84952615 -36304915 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 9 1233 918 144 20 27 chr12 84952624 84952774 -36304756 - B1_Mur3 SINE Alu 0 149 1 9 1233 386 256 139 0 chr12 84952900 84953029 -36304501 - B1F2 SINE Alu 0 149 3 9 1233 412 233 8 8 chr12 84953641 84953762 -36303768 + (TA)n Simple_repeat Simple_repeat 2 122 0 1 1233 1292 91 0 0 chr12 84953762 84953938 -36303592 - B2_Mm2 SINE B2 -18 177 2 1 1233 573 297 19 25 chr12 84954179 84954341 -36303189 + RSINE1 SINE B4 3 163 -2 1 1233 727 228 108 26 chr12 84954368 84954562 -36302968 + B3A SINE B2 6 215 -1 1 1233 816 60 231 0 chr12 84954572 84954689 -36302841 + B1_Mus1 SINE Alu 2 145 -3 1 1233 289 289 172 17 chr12 84954961 84955077 -36302453 + RSINE1 SINE B4 3 136 -29 1 1233 31 0 0 0 chr12 84955077 84955108 -36302422 + AT_rich Low_complexity Low_complexity 1 31 0 1 1233 1274 48 7 0 chr12 84955639 84955785 -36301745 + B1_Mus1 SINE Alu 2 148 0 1 1233 843 84 8 8 chr12 84955877 84955997 -36301533 + B2_Mm1t SINE B2 60 179 -14 1 1233 422 86 331 0 chr12 84956009 84956111 -36301419 + B2_Mm2 SINE B2 46 186 -9 1 1233 793 0 21 0 chr12 84956180 84956277 -36301253 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 1 1233 821 249 28 38 chr12 84956347 84956560 -36300970 + B3 SINE B2 1 211 -5 1 1233 1211 48 0 46 chr12 84956612 84956624 -36300906 - B1_Mus2 SINE Alu 0 147 138 1 1233 222 37 0 0 chr12 84956624 84956651 -36300879 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1233 1211 48 0 46 chr12 84956651 84956791 -36300739 - B1_Mus2 SINE Alu -10 137 2 1 1233 1226 61 0 26 chr12 84956820 84956971 -36300559 - B1_Mus2 SINE Alu 0 147 1 1 1233 1513 55 11 5 chr12 84956977 84957161 -36300369 - B2_Mm1t SINE B2 -8 185 1 1 1233 1134 72 0 7 chr12 84957202 84957341 -36300189 + B1_Mus2 SINE Alu 2 139 -8 1 1233 233 29 29 0 chr12 84957341 84957375 -36300155 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1233 306 288 196 17 chr12 84957386 84957559 -36299971 + B4A SINE B4 43 246 -46 1 1233 235 206 46 31 chr12 84957561 84957626 -36299904 + GA-rich Low_complexity Low_complexity 1 66 0 1 1233 635 243 40 7 chr12 84957798 84957947 -36299583 + B3A SINE B2 1 154 -44 1 1233 378 0 0 0 chr12 84957948 84957990 -36299540 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1233 189 0 0 0 chr12 84957990 84958010 -36299520 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1233 21 0 0 0 chr12 84958019 84958040 -36299490 + AT_rich Low_complexity Low_complexity 1 21 0 1 1233 1443 77 33 0 chr12 84958041 84958224 -36299306 + B2_Mm1t SINE B2 1 189 -4 1 1233 1287 54 0 0 chr12 84958685 84958832 -36298698 + B1_Mus2 SINE Alu 1 147 0 1 1233 219 182 0 43 chr12 84958887 84958933 -36298597 + B3A SINE B2 1 44 -154 1 1233 241 268 55 27 chr12 84958968 84959041 -36298489 - ID4 SINE ID -1 82 8 1 1233 987 123 70 6 chr12 84959110 84959266 -36298264 - B2_Mm2 SINE B2 -27 168 3 1 1233 1380 70 35 6 chr12 84959550 84959723 -36297807 - B2_Mm1t SINE B2 -14 179 2 1 1233 209 266 31 0 chr12 84959750 84959814 -36297716 + CT-rich Low_complexity Low_complexity 1 66 0 1 1233 215 273 0 0 chr12 84959751 84959795 -36297735 + polypyrimidine Low_complexity Low_complexity 3 46 0 1 1233 714 180 37 80 chr12 84959819 84959982 -36297548 - B2_Mm2 SINE B2 -39 156 1 1 1233 773 244 84 30 chr12 84960000 84960203 -36297327 - ID_B1 SINE B4 -7 217 4 1 1233 513 224 144 0 chr12 84960233 84960358 -36297172 + B1_Mur1 SINE Alu 7 149 0 1 1233 536 120 0 0 chr12 84960611 84960686 -36296844 - B1_Mus2 SINE Alu -13 134 60 1 1233 331 119 15 15 chr12 84960785 84960853 -36296677 + (TTC)n Simple_repeat Simple_repeat 3 70 0 1 1233 361 290 46 9 chr12 84960892 84961000 -36296530 - ID_B1 SINE B4 -31 193 82 1 1233 222 37 0 0 chr12 84961128 84961155 -36296375 + (TTC)n Simple_repeat Simple_repeat 2 28 0 1 1233 758 194 67 0 chr12 84962166 84962300 -36295230 - B1_Mus2 SINE Alu 0 147 5 1 1233 1447 89 5 16 chr12 84962385 84962579 -36294951 - B2_Mm1t SINE B2 -1 192 1 1 1233 1049 207 5 5 chr12 84962692 84962881 -36294649 - B3 SINE B2 0 216 28 1 1233 1137 273 47 86 chr12 84962894 84963279 -36294251 - MTE2b LTR MaLR -8 371 2 1 1233 623 223 81 7 chr12 84963346 84963495 -36294035 - B3 SINE B2 0 216 57 1 1233 1351 122 87 56 chr12 84963516 84963803 -36293727 - RMER6B LTR ERVK -38 423 128 1 1233 318 106 0 0 chr12 84963803 84963850 -36293680 + (TTTC)n Simple_repeat Simple_repeat 4 50 0 1 1233 730 65 84 0 chr12 84963852 84963959 -36293571 - B1_Mus1 SINE Alu 0 148 33 1 1233 819 148 14 29 chr12 84963959 84964098 -36293432 - RMER6B LTR ERVK -324 137 1 1 1233 212 262 115 0 chr12 84964098 84964150 -36293380 - B3A SINE B2 -136 62 4 1 1233 414 0 0 0 chr12 84964152 84964198 -36293332 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 1 1233 898 182 7 0 chr12 84964198 84964341 -36293189 - B1_Mus1 SINE Alu -4 144 1 1 1233 23 33 0 0 chr12 84964355 84964385 -36293145 + AT_rich Low_complexity Low_complexity 1 30 0 1 1233 433 324 9 0 chr12 84964424 84964535 -36292995 - RSINE1 SINE B4 -52 113 2 1 1233 1028 207 39 15 chr12 84964571 84964777 -36292753 + B3 SINE B2 6 216 0 1 1233 1374 78 44 6 chr12 84964783 84964963 -36292567 + B2_Mm2 SINE B2 3 189 -6 1 1233 241 291 64 17 chr12 84965056 84965186 -36292344 - MIRc SINE MIR -17 251 100 1 1233 233 246 0 71 chr12 84965269 84965339 -36292191 - PB1D9 SINE Alu 0 120 56 1 1233 275 279 196 9 chr12 84965370 84965482 -36292048 - L2a LINE L2 -1 3425 3293 1 1233 487 184 228 0 chr12 84965539 84965653 -36291877 + B1_Mus2 SINE Alu 1 140 -7 1 1233 695 100 244 37 chr12 84965661 84965796 -36291734 + B2_Mm2 SINE B2 2 164 -31 1 1233 382 125 160 44 chr12 84965815 84965932 -36291598 + B2_Mm2 SINE B2 47 192 -1 1 1233 4638 14 2 12 chr12 84965937 84966435 -36291095 + MT2_Mm LTR ERVL 1 493 0 1 1233 48366 15 6 0 chr12 84966435 84971761 -36285769 + MERVL-int LTR ERVL 1 5360 -125 1 1233 387 167 46 35 chr12 84971761 84971848 -36285682 + ORR1A3-int LTR MaLR 553 640 -1323 1 1233 322 0 0 0 chr12 84971848 84971886 -36285644 + MERVL-int LTR ERVL 5448 5485 0 1 1233 4638 14 2 12 chr12 84971886 84972384 -36285146 + MT2_Mm LTR ERVL 1 493 0 1 1233 189 180 0 0 chr12 84973473 84973523 -36284007 + G-rich Low_complexity Low_complexity 1 50 0 1 1233 246 343 27 36 chr12 84974612 84974724 -36282806 + MIRb SINE MIR 107 217 -51 1 1233 767 262 35 50 chr12 84975152 84975353 -36282177 - B3 SINE B2 -8 208 11 1 1233 1271 54 0 0 chr12 84975573 84975720 -36281810 - B1_Mus2 SINE Alu 0 147 1 1 1233 1672 36 0 50 chr12 84975881 84976083 -36281447 - B2_Mm1t SINE B2 0 193 2 1 1233 616 209 9 9 chr12 84976108 84976219 -36281311 - PB1D9 SINE Alu -7 113 3 1 1233 245 312 0 0 chr12 84976253 84976317 -36281213 - ID2 SINE ID -6 77 14 1 1233 341 252 80 0 chr12 84976411 84976518 -36281012 - B1F1 SINE Alu 0 117 1 1 1233 1331 92 37 21 chr12 84976601 84976790 -36280740 - B2_Mm2 SINE B2 -2 193 2 1 1233 525 252 88 61 chr12 84976914 84977210 -36280320 - L1MC4 LINE L1 -31 8011 7708 1 1233 1180 48 0 40 chr12 84978171 84978322 -36279208 - B1_Mm SINE Alu 0 147 3 1 1233 1043 136 7 0 chr12 84978443 84978590 -36278940 + B1_Mus1 SINE Alu 1 148 0 1 1233 637 194 104 7 chr12 84978666 84978801 -36278729 + B1_Mur2 SINE Alu 2 149 0 1 1233 300 326 180 38 chr12 84978896 84979385 -36278145 + L2a LINE L2 2587 3153 -273 1 1233 39 0 0 0 chr12 84979485 84979524 -36278006 + AT_rich Low_complexity Low_complexity 1 39 0 1 1233 901 177 14 0 chr12 84980579 84980720 -36276810 - B1_Mur4 SINE Alu -6 144 2 1 1233 24 32 0 0 chr12 84980724 84980755 -36276775 + AT_rich Low_complexity Low_complexity 1 31 0 1 1233 730 259 0 33 chr12 84980775 84980927 -36276603 - RSINE1 SINE B4 -16 149 3 1 1233 1230 62 7 0 chr12 84981112 84981258 -36276272 + B1_Mus2 SINE Alu 1 147 0 1 1233 400 324 102 14 chr12 84981414 84981561 -36275969 + RSINE1 SINE B4 4 163 -2 1 1233 294 338 93 29 chr12 84981944 84982084 -36275446 + B1F1 SINE Alu 1 149 0 1 1233 496 244 42 78 chr12 84982091 84982233 -36275297 - ID_B1 SINE B4 -7 217 81 1 1233 351 0 0 0 chr12 84982412 84982451 -36275079 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1233 200 59 29 0 chr12 84982575 84982609 -36274921 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 1 1233 1222 55 14 0 chr12 84982615 84982761 -36274769 - B1_Mus1 SINE Alu 0 148 1 1 1233 215 269 39 0 chr12 84982761 84982813 -36274717 - B1F2 SINE Alu -95 54 1 1 1233 232 229 27 127 chr12 84982829 84982939 -36274591 - YREP_Mm Unknown Unknown -1488 324 226 1 1233 589 191 9 35 chr12 84983768 84983882 -36273648 - PB1D9 SINE Alu -8 112 2 1 1233 737 182 45 0 chr12 84984017 84984149 -36273381 - B1_Mur4 SINE Alu -7 143 6 1 1233 284 267 93 28 chr12 84984180 84984288 -36273242 - PB1D10 SINE Alu -2 115 1 1 1233 396 293 0 0 chr12 84984572 84984654 -36272876 - B1F1 SINE Alu -63 86 5 1 1233 450 319 42 54 chr12 84984926 84985092 -36272438 - RSINE1 SINE B4 0 165 2 1 1233 1012 110 7 14 chr12 84985424 84985571 -36271959 - B1_Mus2 SINE Alu 0 147 2 1 1233 545 254 121 68 chr12 84985583 84985790 -36271740 - ID_B1 SINE B4 -6 218 1 1 1233 356 287 96 39 chr12 84985898 84986054 -36271476 - B3 SINE B2 -13 203 39 1 1233 897 266 66 0 chr12 84986057 84986313 -36271217 - ORR1D2 LTR MaLR -26 344 72 1 1233 632 239 15 15 chr12 84986341 84986477 -36271053 - B1_Mur1 SINE Alu 0 149 14 1 1233 1024 145 64 48 chr12 84987914 84988102 -36269428 - B2_Mm2 SINE B2 -2 193 3 1 1233 1753 26 0 0 chr12 84988122 84988314 -36269216 - B2_Mm1t SINE B2 0 193 2 1 1233 1041 125 28 0 chr12 84988362 84988506 -36269024 - B1_Mus1 SINE Alu 0 148 1 1 1233 634 221 27 33 chr12 84988678 84988694 -36268836 - B1_Mur3 SINE Alu 0 149 138 1 1233 270 0 0 0 chr12 84988694 84988724 -36268806 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1233 634 221 27 33 chr12 84988724 84988857 -36268673 - B1_Mur3 SINE Alu -12 137 1 1 1233 216 273 212 0 chr12 84989003 84989069 -36268461 - PB1D7 SINE Alu -34 86 7 1 1233 1269 76 116 0 chr12 84989296 84989468 -36268062 - B2_Mm1t SINE B2 0 193 2 1 1233 354 219 0 0 chr12 84989699 84989804 -36267726 + CT-rich Low_complexity Low_complexity 2 106 0 1 1233 700 179 164 0 chr12 84989820 84989960 -36267570 - B2_Mm2 SINE B2 -31 164 2 1 1233 426 288 104 0 chr12 84990013 84990138 -36267392 - B3 SINE B2 -77 139 2 1 1233 952 90 113 0 chr12 84990257 84990390 -36267140 - B1_Mus1 SINE Alu 0 148 1 1 1233 412 226 204 48 chr12 84990418 84990604 -36266926 - B3 SINE B2 0 216 2 1 1233 375 121 0 0 chr12 84990612 84990670 -36266860 + (TATG)n Simple_repeat Simple_repeat 1 58 0 1 1233 360 340 74 42 chr12 84990681 84990896 -36266634 - B4A SINE B4 -43 249 28 1 1233 1212 89 0 0 chr12 84991067 84991213 -36266317 + B1_Mus2 SINE Alu 2 147 0 1 1233 496 168 56 56 chr12 84991427 84991553 -36265977 - B1_Mus2 SINE Alu -21 126 1 1 1233 29 28 0 0 chr12 84991948 84991984 -36265546 + AT_rich Low_complexity Low_complexity 1 36 0 1 1233 189 0 0 0 chr12 84992031 84992052 -36265478 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1233 306 194 0 0 chr12 84992959 84993021 -36264509 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1233 1038 78 19 50 chr12 84993225 84993386 -36264144 - B2_Mm2 SINE B2 -39 156 1 1 1233 231 254 141 0 chr12 84993518 84993589 -36263941 - ID2 SINE ID -1 82 2 1 1233 416 281 105 0 chr12 84993636 84993750 -36263780 + ID_B1 SINE B4 79 204 -20 1 1233 1205 68 0 0 chr12 84993856 84994002 -36263528 + B1_Mus2 SINE Alu 2 147 0 1 1233 434 270 149 16 chr12 84994165 84994353 -36263177 - B3 SINE B2 -3 213 1 1 1233 333 202 188 20 chr12 84994368 84994469 -36263061 - ID_B1 SINE B4 0 224 107 1 1233 531 284 94 7 chr12 84994513 84994662 -36262868 - RSINE1 SINE B4 -2 163 2 1 1233 1757 209 119 75 chr12 84994777 84995133 -36262397 - RMER15 LTR ERVL -47 528 168 1 1233 1177 82 128 12 chr12 84995133 84995305 -36262225 - B2_Mm2 SINE B2 -1 194 3 1 1233 1757 209 119 75 chr12 84995305 84995454 -36262076 - RMER15 LTR ERVL -408 167 1 1 1233 1019 192 84 25 chr12 84996041 84996244 -36261286 + B3 SINE B2 2 216 0 1 1233 338 231 132 19 chr12 84996249 84996355 -36261175 + B1_Mus1 SINE Alu 5 122 -26 1 1233 261 0 0 0 chr12 84996721 84996750 -36260780 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1233 1281 61 0 0 chr12 84996750 84996897 -36260633 - B1_Mm SINE Alu 0 147 1 1 1233 1481 145 135 0 chr12 84997172 84997454 -36260076 + IAPEY3_LTR LTR ERVK 1 320 -12 1 1233 434 217 0 53 chr12 84997590 84997709 -36259821 - PB1D9 SINE Alu -43 107 2 1 1233 22 35 0 0 chr12 84998024 84998053 -36259477 + AT_rich Low_complexity Low_complexity 1 29 0 1 1233 2610 92 81 3 chr12 84998241 84998613 -36258917 + Lx2 LINE L1 6597 6997 0 1 1233 227 301 106 11 chr12 84999472 84999566 -36257964 - PB1D9 SINE Alu -13 107 5 1 1233 509 222 16 49 chr12 84999668 84999791 -36257739 - PB1D9 SINE Alu -1 119 1 1 1233 456 282 38 15 chr12 84999846 84999979 -36257551 - B1_Mur2 SINE Alu -12 137 2 1 1233 516 315 95 7 chr12 85000027 85000174 -36257356 + RSINE1 SINE B4 2 161 -4 1 1233 225 132 0 0 chr12 85001367 85001405 -36256125 + (TTA)n Simple_repeat Simple_repeat 3 40 0 2 1233 398 324 9 16 chr12 85004934 85005152 -36252378 + GA-rich Low_complexity Low_complexity 1 216 0 3 1233 689 180 43 7 chr12 85005358 85005498 -36252032 - B1_Mur4 SINE Alu 0 150 6 4 1233 368 216 353 19 chr12 85005602 85005758 -36251772 + B3 SINE B2 2 209 -7 5 1233 350 233 125 10 chr12 85005761 85005865 -36251665 + PB1D10 SINE Alu 2 117 0 6 1233 1249 34 0 13 chr12 85006505 85006654 -36250876 - B1_Mus2 SINE Alu 0 147 1 7 1233 338 229 156 33 chr12 85006654 85006776 -36250754 - MTD LTR MaLR -280 139 3 8 1233 417 211 182 24 chr12 85006914 85007040 -36250490 + B1_Mur2 SINE Alu 1 146 -3 9 1233 300 53 0 0 chr12 85007130 85007168 -36250362 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1 1233 1015 149 0 18 chr12 85007170 85007334 -36250196 - B2_Mm2 SINE B2 -34 161 1 1 1233 626 280 84 22 chr12 85007354 85007533 -36249997 - B3A SINE B2 0 198 9 1 1233 551 231 67 47 chr12 85008106 85008299 -36249231 - B3 SINE B2 -3 192 3 1 1233 751 63 45 0 chr12 85008300 85008411 -36249119 - B1_Mus2 SINE Alu 0 147 32 1 1233 356 305 0 71 chr12 85008491 85008618 -36248912 - PB1D9 SINE Alu -1 119 2 1 1233 228 269 0 0 chr12 85009078 85009182 -36248348 + GA-rich Low_complexity Low_complexity 1 104 0 1 1233 207 328 0 0 chr12 85009389 85009456 -36248074 + GA-rich Low_complexity Low_complexity 2 68 0 1 1233 369 93 0 0 chr12 85009575 85009629 -36247901 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1233 407 206 125 73 chr12 85010125 85010261 -36247269 - B1_Mur3 SINE Alu -1 148 6 1 1233 297 279 86 79 chr12 85010131 85010283 -36247247 - B4 SINE B4 -73 219 67 2 1233 212 47 116 0 chr12 85010330 85010373 -36247157 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2 1233 1219 62 7 0 chr12 85010373 85010519 -36247011 - B1_Mus2 SINE Alu 0 147 1 2 1233 523 191 0 0 chr12 85010541 85010630 -36246900 - B3 SINE B2 -86 130 42 2 1233 1120 76 14 14 chr12 85010847 85010993 -36246537 + B1_Mm SINE Alu 1 146 -1 2 1233 488 164 65 28 chr12 85011036 85011143 -36246387 + PB1D9 SINE Alu 9 119 -1 2 1233 573 229 0 0 chr12 85011510 85011615 -36245915 - B1_Mus1 SINE Alu -12 136 32 2 1233 1245 61 0 0 chr12 85012553 85012700 -36244830 - B1_Mm SINE Alu 0 147 1 2 1233 207 0 0 0 chr12 85013191 85013214 -36244316 + (TATG)n Simple_repeat Simple_repeat 1 23 0 2 1233 224 309 18 0 chr12 85013220 85013275 -36244255 - PB1D9 SINE Alu -64 56 1 2 1233 273 340 40 10 chr12 85014155 85014293 -36243237 - B4 SINE B4 -141 151 7 3 1233 554 256 216 0 chr12 85014481 85014657 -36242873 - B3 SINE B2 0 216 3 3 1233 979 129 13 20 chr12 85015037 85015187 -36242343 + B1_Mur4 SINE Alu 1 149 -1 3 1233 213 154 0 0 chr12 85015345 85015384 -36242146 + GA-rich Low_complexity Low_complexity 1 39 0 3 1233 496 241 99 42 chr12 85016551 85016843 -36240687 - Lx7 LINE L1 -1568 5905 5613 3 1233 372 294 63 18 chr12 85016847 85016958 -36240572 - B1_Mur2 SINE Alu -33 116 1 3 1233 324 240 162 30 chr12 85017658 85017757 -36239773 - PB1D10 SINE Alu 0 117 6 3 1233 21 0 0 0 chr12 85017812 85017833 -36239697 + AT_rich Low_complexity Low_complexity 1 21 0 3 1233 474 264 0 9 chr12 85017965 85018076 -36239454 + B1_Mur3 SINE Alu 22 131 -18 3 1233 366 225 14 0 chr12 85018092 85018163 -36239367 + PB1D10 SINE Alu 25 96 -21 3 1233 517 190 106 57 chr12 85018190 85018313 -36239217 + B1_Mus2 SINE Alu 1 129 -18 4 1233 1110 130 58 12 chr12 85018340 85018511 -36239019 - B2_Mm2 SINE B2 -16 179 1 4 1233 281 292 156 0 chr12 85018607 85018703 -36238827 + PB1D9 SINE Alu 1 111 -9 4 1233 1614 38 43 0 chr12 85018992 85019176 -36238354 + B2_Mm2 SINE B2 1 192 -3 4 1233 249 267 163 0 chr12 85019210 85019296 -36238234 - PB1D10 SINE Alu -8 109 10 4 1233 1342 106 28 0 chr12 85019683 85019863 -36237667 - B2_Mm1t SINE B2 -7 186 2 4 1233 231 207 315 54 chr12 85020095 85020187 -36237343 + PB1D9 SINE Alu 5 120 0 4 1233 1401 96 37 5 chr12 85020321 85020510 -36237020 - B2_Mm2 SINE B2 0 195 1 4 1233 591 285 102 78 chr12 85020743 85020982 -36236548 + B4 SINE B4 28 274 -18 4 1233 183 129 0 0 chr12 85020982 85021013 -36236517 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1233 591 285 102 78 chr12 85021013 85021028 -36236502 + B4 SINE B4 275 288 -4 4 1233 1321 95 38 22 chr12 85021319 85021502 -36236028 + B2_Mm2 SINE B2 2 187 -8 5 1233 528 158 159 48 chr12 85021549 85021675 -36235855 - B1_Mus1 SINE Alu 0 148 9 5 1233 408 37 0 100 chr12 85021687 85021807 -36235723 + (TTC)n Simple_repeat Simple_repeat 3 110 0 5 1233 1111 87 25 0 chr12 85021808 85021969 -36235561 - B2_Mm1t SINE B2 -26 167 3 5 1233 348 247 29 41 chr12 85023455 85023591 -36233939 + ID4 SINE ID 7 143 -9 5 1233 27 0 0 0 chr12 85024235 85024262 -36233268 + AT_rich Low_complexity Low_complexity 1 27 0 5 1233 180 0 0 0 chr12 85024335 85024355 -36233175 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1233 1226 68 0 0 chr12 85024355 85024501 -36233029 - B1_Mus2 SINE Alu 0 147 2 5 1233 674 193 20 41 chr12 85024573 85024719 -36232811 - B1_Mur4 SINE Alu -1 149 7 5 1233 213 229 114 57 chr12 85025290 85025378 -36232152 - B1F SINE Alu 0 149 57 5 1233 361 256 53 53 chr12 85026164 85026296 -36231234 - ID_B1 SINE B4 -3 221 90 6 1233 535 217 17 17 chr12 85026182 85026299 -36231231 - B1_Mur4 SINE Alu -27 123 7 6 1233 286 275 35 89 chr12 85026201 85026345 -36231185 - MT2B LTR ERVL -345 256 123 6 1233 924 145 116 30 chr12 85026496 85026660 -36230870 - B2_Mm2 SINE B2 -16 179 2 6 1233 1422 67 45 0 chr12 85027600 85027778 -36229752 - B2_Mm1t SINE B2 -7 186 1 6 1233 232 260 47 141 chr12 85030348 85030411 -36227119 - Charlie5 DNA MER1_type -15 2609 2555 6 1233 1419 98 16 0 chr12 85030411 85030595 -36226935 - B2_Mm2 SINE B2 -8 187 1 6 1233 232 260 47 141 chr12 85030595 85030701 -36226829 - Charlie5 DNA MER1_type -70 2554 2456 6 1233 184 212 0 0 chr12 85030758 85030791 -36226739 + L2a LINE L2 3350 3382 -44 6 1233 245 145 275 8 chr12 85031055 85031126 -36226404 + PB1 SINE Alu 27 102 -25 6 1233 349 295 0 40 chr12 85031428 85031527 -36226003 - RSINE1 SINE B4 -61 104 10 6 1233 240 35 0 0 chr12 85031536 85031565 -36225965 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 7 1233 627 130 16 3 chr12 85031600 85031707 -36225823 - B1_Mur4 SINE Alu -2 148 1 7 1233 684 282 65 9 chr12 85031867 85032082 -36225448 - B4A SINE B4 -65 227 1 7 1233 273 230 93 13 chr12 85032663 85032738 -36224792 - MER2 DNA MER2_type -22 323 243 7 1233 23 0 0 0 chr12 85032804 85032827 -36224703 + AT_rich Low_complexity Low_complexity 1 23 0 7 1233 419 184 60 20 chr12 85032827 85032927 -36224603 - MER2 DNA MER2_type -118 227 124 7 1233 358 269 27 2 chr12 85033293 85033390 -36224140 + ID_B1 SINE B4 63 159 -65 7 1233 352 259 108 54 chr12 85033384 85033551 -36223979 + ID_B1 SINE B4 40 215 -9 7 1233 597 221 30 0 chr12 85033428 85033559 -36223971 + B1_Mur1 SINE Alu 14 148 -1 7 1233 198 0 0 0 chr12 85034237 85034259 -36223271 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 7 1233 1262 36 0 0 chr12 85034534 85034673 -36222857 - B1_Mus1 SINE Alu -9 139 1 7 1233 869 272 35 20 chr12 85034735 85034934 -36222596 - ID_B1 SINE B4 -17 207 6 8 1233 515 291 127 37 chr12 85035081 85035349 -36222181 - B4A SINE B4 0 292 1 8 1233 339 233 27 0 chr12 85035442 85035515 -36222015 - ID4_ SINE ID -8 75 1 8 1233 1236 181 14 19 chr12 85036642 85036856 -36220674 - B3 SINE B2 -3 213 1 8 1233 1936 161 108 21 chr12 85036891 85037271 -36220259 - MTC LTR MaLR -8 413 1 8 1233 207 0 0 0 chr12 85037310 85037333 -36220197 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1233 772 173 15 15 chr12 85037336 85037471 -36220059 - B1_Mus1 SINE Alu -13 135 1 8 1233 241 139 0 0 chr12 85037976 85038012 -36219518 - PB1D9 SINE Alu -83 37 2 8 1233 1218 52 0 0 chr12 85038179 85038315 -36219215 + B1_Mus2 SINE Alu 2 137 -10 8 1233 1663 243 114 20 chr12 85038423 85038973 -36218557 - RLTR19-int LTR ERVK -3136 3001 2428 8 1233 612 176 114 7 chr12 85038998 85039147 -36218383 - RLTR19-int LTR ERVK -4797 1340 1176 8 1233 226 115 39 0 chr12 85039174 85039226 -36218304 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 9 1233 257 231 0 19 chr12 85039251 85039304 -36218226 - RLTR19-int LTR ERVK -2074 1164 1113 8 1233 1392 164 193 78 chr12 85039884 85040241 -36217289 - RMER10B LTR ERVL 0 398 1 9 1233 631 176 129 8 chr12 85041247 85041379 -36216151 + B3A SINE B2 1 148 -50 9 1233 285 182 0 0 chr12 85041379 85041434 -36216096 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1233 1493 160 4 0 chr12 85042008 85042233 -36215297 - URR1A DNA MER1_type 0 226 1 9 1233 1305 79 49 38 chr12 85042368 85042552 -36214978 - B2_Mm2 SINE B2 -9 186 1 9 1233 400 232 73 0 chr12 85042590 85042672 -36214858 + PB1D9 SINE Alu 5 92 -28 9 1233 271 124 282 0 chr12 85042684 85042779 -36214751 - B3A SINE B2 -88 128 3 9 1233 450 252 81 7 chr12 85042898 85043034 -36214496 - B1F SINE Alu 0 149 4 9 1233 1245 62 0 0 chr12 85043175 85043321 -36214209 - B1_Mus1 SINE Alu -1 147 2 9 1233 269 204 19 0 chr12 85043335 85043389 -36214141 - B1_Mus2 SINE Alu 0 147 93 1 1233 308 248 228 0 chr12 85043539 85043640 -36213890 - PB1 SINE Alu -3 124 1 1 1233 876 154 40 40 chr12 85043725 85043874 -36213656 - B1_Mur3 SINE Alu 0 149 1 1 1233 648 307 125 16 chr12 85044134 85044719 -36212811 - L1ME2 LINE L1 -241 5923 5281 1 1233 346 233 176 40 chr12 85044988 85045238 -36212292 - L1MC LINE L1 -1129 5017 4734 1 1233 394 219 61 0 chr12 85045291 85045373 -36212157 + B1_Mus2 SINE Alu 1 87 -60 1 1233 1292 48 0 0 chr12 85045523 85045669 -36211861 - B1_Mm SINE Alu 0 147 2 1 1233 232 217 72 0 chr12 85045670 85045739 -36211791 - L1ME2 LINE L1 -1585 4561 4488 1 1233 182 105 0 26 chr12 85045810 85045849 -36211681 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 1 1233 862 177 64 0 chr12 85045851 85045992 -36211538 - B1_Mur4 SINE Alu 0 150 1 1 1233 252 292 22 33 chr12 85046121 85046213 -36211317 - L1M3 LINE L1 -268 5903 5813 1 1233 1264 41 0 7 chr12 85046226 85046374 -36211156 - B1_Mm SINE Alu 0 147 1 1 1233 235 250 53 18 chr12 85046401 85046458 -36211072 - PB1 SINE Alu -68 59 1 1 1233 533 268 28 83 chr12 85046464 85046680 -36210850 - L1M3 LINE L1 -353 5818 5615 1 1233 361 265 137 0 chr12 85046685 85046787 -36210743 - PB1D10 SINE Alu 0 117 2 1 1233 284 290 60 0 chr12 85046803 85046903 -36210627 - L1M3 LINE L1 -608 5581 5476 1 1233 899 318 33 76 chr12 85047184 85047298 -36210232 - MER77 LTR ERVL -5 602 489 1 1233 1156 110 0 0 chr12 85047298 85047444 -36210086 + B1_Mus2 SINE Alu 2 147 0 1 1233 899 318 33 76 chr12 85047444 85047751 -36209779 - MER77 LTR ERVL -119 488 199 1 1233 310 278 28 0 chr12 85048288 85048360 -36209170 - B3A SINE B2 -96 102 29 1 1233 485 330 96 39 chr12 85048365 85048721 -36208809 + L1MC LINE L1 5420 5795 -2087 1 1233 371 243 99 36 chr12 85048762 85048873 -36208657 + PB1 SINE Alu 1 118 -9 1 1233 184 306 0 0 chr12 85049446 85049495 -36208035 + L2 LINE L2 1474 1522 -1897 1 1233 405 39 0 0 chr12 85049509 85049560 -36207970 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1233 268 268 121 20 chr12 85049755 85049854 -36207676 - PB1D10 SINE Alu -8 109 1 1 1233 1022 257 111 66 chr12 85049943 85050276 -36207254 - ORR1D2 LTR MaLR -4 366 19 1 1233 231 210 73 18 chr12 85050374 85050440 -36207090 + MIR SINE MIR 25 93 -175 1 1233 529 232 52 84 chr12 85050561 85050716 -36206814 - RSINE1 SINE B4 -2 163 14 1 1233 1276 61 7 0 chr12 85050786 85050933 -36206597 + B1_Mus1 SINE Alu 1 148 0 1 1233 411 260 94 0 chr12 85051053 85051149 -36206381 - RSINE1 SINE B4 -60 105 1 1 1233 301 128 0 21 chr12 85051316 85051340 -36206190 + HAL1-3A_ME LINE L1 1975 1998 -860 1 1233 387 0 0 0 chr12 85051340 85051383 -36206147 + (CCA)n Simple_repeat Simple_repeat 2 44 0 1 1233 301 128 0 21 chr12 85051383 85051406 -36206124 + HAL1-3A_ME LINE L1 1999 2021 -837 1 1233 1845 174 78 6 chr12 85051535 85051894 -36205636 + RMER1B Other Other 669 1053 -13 1 1233 432 225 221 16 chr12 85052100 85052222 -36205308 - B1_Mus2 SINE Alu 0 147 1 1 1233 1337 64 69 12 chr12 85052273 85052446 -36205084 - B2_Mm2 SINE B2 -12 183 1 1 1233 681 150 8 40 chr12 85052536 85052661 -36204869 + B1_Mus2 SINE Alu 27 147 0 1 1233 1169 182 34 29 chr12 85052752 85052961 -36204569 + B3 SINE B2 1 210 -6 1 1233 254 306 134 9 chr12 85053814 85053926 -36203604 + B1F1 SINE Alu 4 129 -20 1 1233 544 225 67 0 chr12 85054030 85054150 -36203380 - B1F1 SINE Alu -21 128 1 1 1233 357 301 129 29 chr12 85054150 85054177 -36203353 - B4 SINE B4 -199 93 53 1 1233 232 333 92 80 chr12 85054251 85054489 -36203041 - MLT1J LTR MaLR -188 324 84 1 1233 1491 60 28 0 chr12 85054516 85054698 -36202832 + B2_Mm2 SINE B2 1 187 -8 1 1233 575 284 106 17 chr12 85055024 85055203 -36202327 + B3A SINE B2 2 196 -2 1 1233 888 61 42 18 chr12 85055233 85055399 -36202131 + RMER17B LTR ERVK 291 460 -498 1 1233 524 244 39 8 chr12 85055426 85055554 -36201976 + B1F1 SINE Alu 11 142 -7 1 1233 227 310 99 46 chr12 85055952 85056104 -36201426 - RSINE1 SINE B4 -4 161 2 1 1233 287 162 24 24 chr12 85056500 85056582 -36200948 + CT-rich Low_complexity Low_complexity 2 83 0 1 1233 422 257 40 20 chr12 85056582 85056733 -36200797 - Tigger12c DNA MER2_type -565 169 16 1 1233 252 0 0 0 chr12 85056783 85056811 -36200719 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1233 955 138 7 0 chr12 85056811 85056949 -36200581 - B1_Mur4 SINE Alu -10 140 2 1 1233 648 254 8 98 chr12 85057849 85058085 -36199445 + B3 SINE B2 2 216 0 1 1233 22 35 0 0 chr12 85058142 85058171 -36199359 + AT_rich Low_complexity Low_complexity 1 29 0 1 1233 325 295 0 33 chr12 85058171 85058255 -36199275 - RSINE1 SINE B4 -1 164 84 1 1233 459 263 107 121 chr12 85058255 85058397 -36199133 - RMER15 LTR ERVL 0 575 448 1 1233 1166 82 0 0 chr12 85058397 85058544 -36198986 - B1_Mus1 SINE Alu 0 148 2 1 1233 459 263 107 121 chr12 85058544 85058682 -36198848 - RMER15 LTR ERVL -128 447 299 1 1233 1620 140 87 10 chr12 85059104 85059393 -36198137 - Lx4B LINE L1 -1 7057 6747 1 1233 434 250 27 21 chr12 85059569 85059679 -36197851 - B1_Mur2 SINE Alu -2 147 6 1 1233 23 0 0 0 chr12 85060120 85060143 -36197387 + AT_rich Low_complexity Low_complexity 1 23 0 1 1233 404 67 17 0 chr12 85060649 85060709 -36196821 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1233 194 0 39 0 chr12 85061080 85061106 -36196424 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1233 276 195 62 38 chr12 85061118 85061198 -36196332 - L1MEf LINE L1 -2466 3680 3599 1 1233 334 345 76 0 chr12 85061208 85061327 -36196203 - L1MEf LINE L1 -5443 799 672 1 1233 1164 186 0 64 chr12 85061427 85061645 -36195885 + B3 SINE B2 5 208 -8 1 1233 256 211 50 50 chr12 85062855 85062915 -36194615 - B3A SINE B2 -127 71 12 1 1233 480 18 0 0 chr12 85063013 85063070 -36194460 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1233 384 103 35 0 chr12 85063434 85063492 -36194038 + B2_Mm2 SINE B2 1 60 -135 1 1233 1038 135 0 0 chr12 85063603 85063751 -36193779 + B1_Mus1 SINE Alu 1 148 0 1 1233 710 270 67 44 chr12 85064579 85064804 -36192726 + B4A SINE B4 1 230 -62 1 1233 271 322 99 14 chr12 85065159 85065370 -36192160 + MER113 DNA MER1_type 287 515 -6 1 1234 327 295 56 28 chr12 85066160 85066303 -36191227 - RSINE1 SINE B4 -17 148 2 1 1234 430 229 21 0 chr12 85066331 85066427 -36191103 - B3 SINE B2 -6 210 113 1 1234 229 214 59 127 chr12 85066480 85066496 -36191034 - YREP_Mm Unknown Unknown -1453 359 344 1 1234 333 269 80 22 chr12 85066496 85066633 -36190897 + B1F2 SINE Alu 3 147 -2 1 1234 229 214 59 127 chr12 85066633 85066734 -36190796 - YREP_Mm Unknown Unknown -1469 343 250 1 1234 323 247 0 88 chr12 85066655 85066735 -36190795 + ID_B1 SINE B4 79 151 -73 1 1234 314 306 58 48 chr12 85066668 85066771 -36190759 + PB1D10 SINE Alu 9 112 -5 1 1234 948 103 13 46 chr12 85066909 85067062 -36190468 + B1_Mus1 SINE Alu 1 148 0 1 1234 28 0 0 0 chr12 85067071 85067099 -36190431 + AT_rich Low_complexity Low_complexity 1 28 0 1 1234 356 250 116 8 chr12 85067471 85067600 -36189930 + RSINE1 SINE B4 11 153 -12 1 1234 792 169 8 85 chr12 85069295 85069481 -36188049 - B3 SINE B2 -22 176 1 1 1234 222 314 0 0 chr12 85070018 85070069 -36187461 + PB1D9 SINE Alu 63 113 -7 1 1234 712 228 80 0 chr12 85070413 85070575 -36186955 - B3 SINE B2 -2 214 40 1 1234 1949 179 61 29 chr12 85070627 85071035 -36186495 - MTC LTR MaLR 0 421 1 1 1234 217 333 0 13 chr12 85071060 85071136 -36186394 - L2a LINE L2 -10 3416 3342 1 1234 809 246 97 68 chr12 85071757 85071823 -36185707 + B4A SINE B4 5 75 -217 1 1234 633 38 0 0 chr12 85071823 85071903 -36185627 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1234 809 246 97 68 chr12 85071903 85072115 -36185415 + B4A SINE B4 76 290 -2 1 1234 436 278 9 0 chr12 85072327 85072442 -36185088 - PB1 SINE Alu -11 116 1 1 1234 578 232 27 0 chr12 85072474 85072586 -36184944 + PB1D10 SINE Alu 1 115 -2 1 1234 212 196 21 21 chr12 85072884 85072931 -36184599 - RSINE1 SINE B4 -44 121 75 1 1234 467 293 14 50 chr12 85072984 85073124 -36184406 - B4 SINE B4 -156 136 2 1 1234 889 141 59 0 chr12 85073448 85073583 -36183947 + B1_Mus1 SINE Alu 1 143 -5 1 1234 562 168 173 16 chr12 85073820 85073947 -36183583 + B1_Mur2 SINE Alu 3 149 0 1 1234 551 231 181 11 chr12 85073988 85074176 -36183354 + ID_B1 SINE B4 1 220 -4 1 1234 338 317 12 0 chr12 85074196 85074278 -36183252 + PB1D10 SINE Alu 3 85 -32 1 1234 1336 103 33 0 chr12 85074315 85074499 -36183031 - B2_Mm2 SINE B2 -5 190 1 1 1234 256 228 148 0 chr12 85074619 85074720 -36182810 - PB1 SINE Alu -9 118 3 1 1234 377 195 161 54 chr12 85076738 85076868 -36180662 + B4 SINE B4 107 250 -42 1 1234 377 287 8 65 chr12 85077079 85077202 -36180328 - RSINE1 SINE B4 -48 117 2 1 1234 318 308 28 37 chr12 85077808 85077916 -36179614 - PB1D9 SINE Alu -13 107 1 1 1234 592 246 8 0 chr12 85077990 85078112 -36179418 - RSINE1 SINE B4 -40 125 3 1 1234 232 325 13 0 chr12 85078273 85078350 -36179180 + CT-rich Low_complexity Low_complexity 6 83 0 1 1234 669 221 122 0 chr12 85078362 85078534 -36178996 - ID_B1 SINE B4 -31 193 1 1 1234 483 260 231 38 chr12 85079565 85079703 -36177827 + MER2 DNA MER2_type 31 193 -152 1 1234 424 259 93 0 chr12 85079703 85079811 -36177719 + PB1D7 SINE Alu 1 118 -2 1 1234 483 260 231 38 chr12 85079811 85079936 -36177594 + MER2 DNA MER2_type 194 345 0 1 1234 966 100 0 0 chr12 85079946 85080086 -36177444 + (TTTCC)n Simple_repeat Simple_repeat 2 141 0 1 1234 1449 50 33 0 chr12 85080096 85080277 -36177253 - B2_Mm2 SINE B2 -7 188 2 1 1234 559 158 8 26 chr12 85080406 85080418 -36177112 - ID_B1 SINE B4 -17 207 196 2 1234 243 0 0 0 chr12 85080418 85080445 -36177085 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1234 559 158 8 26 chr12 85080445 85080549 -36176981 - ID_B1 SINE B4 -29 195 93 2 1234 1824 136 88 3 chr12 85080671 85080989 -36176541 - RMER4B LTR ERVK -190 395 51 2 1234 533 214 45 0 chr12 85081007 85081119 -36176411 + B1_Mur2 SINE Alu 19 135 -14 2 1234 315 264 115 0 chr12 85081281 85081368 -36176162 + RSINE1 SINE B4 13 109 -56 2 1234 430 226 0 0 chr12 85081447 85081531 -36175999 + PB1D9 SINE Alu 35 118 -2 2 1234 310 363 43 22 chr12 85081903 85082041 -36175489 + RSINE1 SINE B4 25 165 0 2 1234 1091 135 90 0 chr12 85082081 85082259 -36175271 + B3 SINE B2 12 205 -11 2 1234 566 277 80 0 chr12 85082337 85082474 -36175056 - B1F2 SINE Alu 0 149 2 2 1234 270 0 0 0 chr12 85082477 85082507 -36175023 + (TATG)n Simple_repeat Simple_repeat 1 30 0 2 1234 670 239 98 52 chr12 85082775 85082969 -36174561 + B4A SINE B4 3 205 -87 2 1234 398 176 0 0 chr12 85083241 85083255 -36174275 + B1_Mur1 SINE Alu 54 94 -55 2 1234 307 210 0 0 chr12 85083255 85083317 -36174213 + ID_B1 SINE B4 138 199 -25 2 1234 189 0 0 0 chr12 85083488 85083509 -36174021 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1234 506 254 44 0 chr12 85084545 85084659 -36172871 + PB1D7 SINE Alu 2 120 0 2 1234 479 245 168 65 chr12 85084795 85085057 -36172473 + B4 SINE B4 2 290 -2 2 1234 278 187 26 39 chr12 85085083 85085239 -36172291 + (CATA)n Simple_repeat Simple_repeat 3 156 0 2 1234 294 287 11 0 chr12 85085646 85085740 -36171790 - MER65-int LTR ERV1 -2655 2468 2374 2 1234 556 202 0 44 chr12 85085740 85085854 -36171676 + PB1D10 SINE Alu 1 109 -8 2 1234 342 261 86 11 chr12 85085948 85086041 -36171489 + PB1 SINE Alu 12 111 -16 2 1234 1031 172 76 57 chr12 85086348 85086558 -36170972 - B3 SINE B2 0 216 3 2 1234 1041 283 48 38 chr12 85086783 85087260 -36170270 - MER65-int LTR ERV1 -3390 1481 1000 2 1234 236 216 0 0 chr12 85087338 85087375 -36170155 - B1_Mus2 SINE Alu -104 43 7 2 1234 425 294 7 29 chr12 85087410 85087550 -36169980 + B1F1 SINE Alu 1 137 -12 2 1234 373 226 181 11 chr12 85087573 85087667 -36169863 + B1F1 SINE Alu 6 115 -34 2 1234 595 164 8 8 chr12 85087795 85087924 -36169606 + GA-rich Low_complexity Low_complexity 3 131 0 2 1234 239 274 20 0 chr12 85087934 85087985 -36169545 - tRNA-Ala-GCY_ tRNA tRNA -18 57 6 2 1234 847 200 122 16 chr12 85088036 85088224 -36169306 + B3 SINE B2 1 208 -8 2 1234 534 278 24 8 chr12 85088401 85088528 -36169002 - ID_B1 SINE B4 -15 209 81 2 1234 464 265 96 137 chr12 85088557 85088828 -36168702 - ORR1E LTR MaLR -79 291 32 2 1234 1250 104 35 0 chr12 85088828 85089001 -36168529 + B2_Mm1t SINE B2 1 179 -14 2 1234 389 73 0 18 chr12 85089076 85089132 -36168398 + B2_Mm2 SINE B2 47 101 -94 2 1234 33 0 0 0 chr12 85089154 85089187 -36168343 + AT_rich Low_complexity Low_complexity 1 33 0 2 1234 819 255 77 2 chr12 85089300 85089534 -36167996 - MTE2b LTR MaLR -126 253 1 2 1234 533 310 119 17 chr12 85089534 85089906 -36167624 - MTE2b-int LTR MaLR -29 1551 1103 2 1234 247 306 51 95 chr12 85090287 85090424 -36167106 - MTE2b-int LTR MaLR -437 1143 1013 2 1234 805 166 7 0 chr12 85090444 85090583 -36166947 + B1_Mur3 SINE Alu 10 149 0 2 1234 288 0 0 0 chr12 85090583 85090615 -36166915 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1234 909 157 86 64 chr12 85090617 85090839 -36166691 + ORR1C2 LTR MaLR 7 215 -169 2 1234 802 236 202 4 chr12 85090837 85091009 -36166521 + MT2A LTR ERVL 244 460 -73 2 1234 627 14 0 0 chr12 85091009 85091081 -36166449 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 2 1234 802 236 202 4 chr12 85091081 85091104 -36166426 + MT2A LTR ERVL 461 486 -47 2 1234 261 83 0 0 chr12 85091104 85091140 -36166390 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 2 1234 802 236 202 4 chr12 85091140 85091185 -36166345 + MT2A LTR ERVL 487 531 -2 2 1234 541 275 58 29 chr12 85091185 85091355 -36166175 - MTE2b-int LTR MaLR -563 1017 843 2 1234 555 252 8 0 chr12 85091355 85091474 -36166056 + RSINE1 SINE B4 2 121 -44 2 1234 324 103 0 0 chr12 85091479 85091537 -36165993 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1234 881 235 30 5 chr12 85091843 85092040 -36165490 + B3 SINE B2 5 206 -10 2 1234 622 165 206 3 chr12 85092063 85092216 -36165314 - B3 SINE B2 -9 189 1 2 1234 1473 291 54 62 chr12 85092265 85092347 -36165183 - MTE2b-int LTR MaLR -1049 531 455 2 1234 1301 70 37 21 chr12 85092347 85092382 -36165148 - B2_Mm1t SINE B2 0 193 160 2 1234 234 0 0 0 chr12 85092382 85092408 -36165122 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2 1234 1301 70 37 21 chr12 85092408 85092561 -36164969 - B2_Mm1t SINE B2 -34 159 3 2 1234 1473 291 54 62 chr12 85092561 85093013 -36164517 - MTE2b-int LTR MaLR -1126 454 1 2 1234 375 281 106 42 chr12 85093013 85093232 -36164298 - MTE2b LTR MaLR 0 379 123 2 1234 330 152 0 0 chr12 85094824 85094883 -36162647 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1234 791 152 53 8 chr12 85094996 85095129 -36162401 - MTD LTR MaLR -2 417 279 2 1234 406 21 0 0 chr12 85095178 85095225 -36162305 - ORR1B1 LTR MaLR -8 386 340 2 1234 1264 48 0 0 chr12 85095235 85095382 -36162148 - B1_Mus2 SINE Alu 0 147 1 2 1234 1318 62 34 0 chr12 85095382 85095560 -36161970 - B2_Mm2 SINE B2 -2 193 10 2 1234 1951 165 77 0 chr12 85095559 85095886 -36161644 - ORR1B1 LTR MaLR -42 352 1 2 1234 313 258 40 79 chr12 85096022 85096123 -36161407 - MER44D DNA MER2_type -585 120 24 2 1234 1477 58 11 0 chr12 85096261 85096450 -36161080 - B2_Mm1t SINE B2 0 193 3 2 1234 396 164 68 0 chr12 85096522 85096595 -36160935 + ID_B1 SINE B4 140 217 -7 2 1234 267 186 85 0 chr12 85096542 85096601 -36160929 + PB1 SINE Alu 64 127 0 2 1234 782 236 84 15 chr12 85096605 85096807 -36160723 + B3 SINE B2 1 216 0 2 1234 405 0 0 0 chr12 85097024 85097069 -36160461 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 2 1234 432 252 75 101 chr12 85097434 85097593 -36159937 - RSINE1 SINE B4 0 165 11 2 1234 188 0 74 0 chr12 85097751 85097778 -36159752 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1234 383 263 0 39 chr12 85098147 85098250 -36159280 + RSINE1 SINE B4 2 100 -65 2 1234 294 386 18 45 chr12 85098280 85098500 -36159030 + RMER4A LTR ERVK 7 220 -246 2 1234 394 267 0 72 chr12 85098634 85098731 -36158799 + RSINE1 SINE B4 76 165 0 2 1234 632 215 270 9 chr12 85099236 85099466 -36158064 - B4A SINE B4 -2 290 1 2 1234 675 175 306 0 chr12 85099477 85099637 -36157893 - B3 SINE B2 -7 209 1 2 1234 2221 145 43 99 chr12 85100556 85100914 -36156616 + MTC LTR MaLR 1 356 -65 2 1234 1495 40 40 0 chr12 85100914 85101091 -36156439 + B2_Mm2 SINE B2 3 186 -9 2 1234 866 106 34 40 chr12 85101092 85101240 -36156290 + B1_Mm SINE Alu 1 147 0 2 1234 2221 145 43 99 chr12 85101240 85101323 -36156207 + MTC LTR MaLR 357 419 -2 2 1234 3900 170 69 180 chr12 85101307 85102535 -36154995 + MTC-int LTR MaLR 1 1092 -166 2 1234 1475 137 45 12 chr12 85102567 85102811 -36154719 + MTC LTR MaLR 112 363 -58 2 1234 759 132 0 134 chr12 85102817 85102974 -36154556 + B1_Mus2 SINE Alu 10 145 -2 2 1234 437 164 0 14 chr12 85102979 85103053 -36154477 + MTC LTR MaLR 349 421 0 2 1234 308 267 265 6 chr12 85103100 85103266 -36154264 + ID_B1 SINE B4 2 210 -14 2 1234 202 200 0 0 chr12 85103433 85103473 -36154057 + G-rich Low_complexity Low_complexity 2 41 0 2 1234 440 111 11 0 chr12 85104116 85104206 -36153324 + (TC)n Simple_repeat Simple_repeat 2 92 0 2 1234 459 0 0 0 chr12 85105813 85105864 -36151666 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1234 289 225 12 112 chr12 85105960 85106040 -36151490 - PB1 SINE Alu -30 97 26 2 1234 689 224 186 28 chr12 85106054 85106306 -36151224 + B4A SINE B4 1 292 0 2 1234 208 175 25 0 chr12 85106308 85106348 -36151182 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1234 819 44 124 0 chr12 85106444 85106557 -36150973 - B1_Mus1 SINE Alu 0 148 22 2 1234 1346 62 73 0 chr12 85106575 85106595 -36150935 - B2_Mm1t SINE B2 0 193 174 2 1234 243 0 0 0 chr12 85106595 85106622 -36150908 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 1234 1346 62 73 0 chr12 85106622 85106780 -36150750 - B2_Mm1t SINE B2 -20 173 3 2 1234 252 311 157 13 chr12 85107479 85107632 -36149898 + MER3 DNA MER1_type 27 201 -8 2 1234 459 75 9 0 chr12 85108004 85108078 -36149452 - B1_Mus1 SINE Alu -44 83 21 2 1234 212 100 25 0 chr12 85111726 85111766 -36145764 + (TGG)n Simple_repeat Simple_repeat 2 42 0 2 1234 383 214 124 0 chr12 85112058 85112147 -36145383 + ID_B1 SINE B4 94 193 -31 2 1234 277 323 0 57 chr12 85112147 85112163 -36145367 + PB1D10 SINE Alu 13 111 -6 2 1234 489 34 0 0 chr12 85112164 85112223 -36145307 + (TAAA)n Simple_repeat Simple_repeat 4 62 0 2 1234 1105 108 0 20 chr12 85112225 85112376 -36145154 + B1_Mus1 SINE Alu 1 148 0 2 1234 717 149 0 0 chr12 85113234 85113348 -36144182 - B2_Mm1a SINE B2 0 193 80 2 1234 871 241 136 127 chr12 85113473 85113508 -36144022 - ORR1D2 LTR MaLR -6 364 332 2 1234 1287 41 0 0 chr12 85113508 85113655 -36143875 + B1_Mus2 SINE Alu 1 147 0 2 1234 871 241 136 127 chr12 85113655 85113671 -36143859 - ORR1D2 LTR MaLR -39 331 328 2 1234 324 0 0 0 chr12 85113671 85113707 -36143823 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 1234 871 241 136 127 chr12 85113707 85114015 -36143515 - ORR1D2 LTR MaLR -43 327 1 2 1234 325 289 68 26 chr12 85114456 85114573 -36142957 - MLT1K LTR MaLR -164 431 310 2 1234 189 296 0 0 chr12 85116113 85116176 -36141354 + MIRm SINE MIR 109 171 -91 2 1234 436 163 157 37 chr12 85117667 85117775 -36139755 + B3 SINE B2 96 216 0 2 1234 322 281 76 62 chr12 85118593 85118737 -36138793 + L2c LINE L2 3242 3387 0 2 1234 306 217 0 0 chr12 85119062 85119122 -36138408 - ID4 SINE ID -1 82 23 2 1234 262 262 11 101 chr12 85119224 85119235 -36138295 + MT2B2 LTR ERVL 154 156 -428 2 1234 446 221 17 0 chr12 85119235 85119325 -36138205 + B1F1 SINE Alu 1 94 -26 2 1234 192 97 0 0 chr12 85120083 85120114 -36137416 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1234 1043 59 82 0 chr12 85120872 85121007 -36136523 + B1_Mus2 SINE Alu 2 147 0 2 1234 270 81 0 0 chr12 85121007 85121044 -36136486 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1234 1063 260 4 9 chr12 85121845 85122070 -36135460 + ID_B1 SINE B4 1 224 0 2 1234 250 47 45 23 chr12 85122071 85122115 -36135415 + (GAAA)n Simple_repeat Simple_repeat 4 48 0 2 1234 222 279 67 34 chr12 85123303 85123392 -36134138 - MIRb SINE MIR -62 206 115 2 1234 207 351 0 0 chr12 85123461 85123535 -36133995 + MIRc SINE MIR 115 188 -80 3 1234 549 200 57 0 chr12 85125704 85125809 -36131721 + B1_Mur2 SINE Alu 21 131 -18 3 1234 2145 119 63 63 chr12 85125811 85126056 -36131474 - RLTR28 LTR ERVL 0 524 276 3 1234 875 123 112 45 chr12 85126056 85126234 -36131296 + B2_Mm2 SINE B2 1 190 -5 3 1234 2145 119 63 63 chr12 85126234 85126401 -36131129 - RLTR28 LTR ERVL -249 275 112 3 1234 1833 173 104 21 chr12 85126409 85126741 -36130789 + RMER4A LTR ERVK 51 409 -57 3 1234 396 0 0 0 chr12 85126741 85126785 -36130745 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1234 1833 173 104 21 chr12 85126785 85126836 -36130694 + RMER4A LTR ERVK 410 465 -1 3 1234 491 182 36 18 chr12 85126836 85126923 -36130607 - RLTR28 LTR ERVL -404 120 32 3 1234 375 188 16 0 chr12 85126984 85127048 -36130482 - B4 SINE B4 -205 87 23 3 1234 529 248 77 8 chr12 85127020 85127150 -36130380 - B1_Mur1 SINE Alu -2 147 9 3 1234 419 189 91 36 chr12 85127170 85127280 -36130250 - PB1D10 SINE Alu 0 117 2 3 1234 1019 95 66 0 chr12 85128028 85128165 -36129365 - B1_Mm SINE Alu 0 147 2 3 1234 440 329 89 13 chr12 85128170 85128327 -36129203 - MER20 DNA MER1_type -5 214 46 3 1234 954 200 44 53 chr12 85128400 85128606 -36128924 - B3 SINE B2 -12 204 1 3 1234 231 186 171 0 chr12 85130560 85130630 -36126900 + ID4 SINE ID 1 82 -1 3 1234 24 53 0 0 chr12 85130717 85130755 -36126775 + AT_rich Low_complexity Low_complexity 1 38 0 3 1234 216 208 26 53 chr12 85130836 85130912 -36126618 - MIR SINE MIR -87 121 48 3 1234 386 238 45 54 chr12 85130913 85130937 -36126593 - B1F SINE Alu -7 142 33 3 1234 425 253 23 0 chr12 85130937 85131024 -36126506 - ID_B1 SINE B4 -22 202 114 3 1234 434 276 55 0 chr12 85133811 85133938 -36123592 + RSINE1 SINE B4 2 135 -30 3 1234 402 235 68 10 chr12 85133988 85134091 -36123439 + PB1D7 SINE Alu 10 118 -2 3 1234 203 286 0 0 chr12 85134639 85134681 -36122849 + MER5B DNA MER1_type 137 178 0 3 1234 637 171 18 37 chr12 85134683 85134792 -36122738 + PB1D9 SINE Alu 2 108 -12 3 1234 252 86 0 0 chr12 85135075 85135110 -36122420 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1234 30 0 0 0 chr12 85135816 85135846 -36121684 + AT_rich Low_complexity Low_complexity 1 30 0 3 1234 264 232 168 20 chr12 85137392 85137493 -36120037 + PB1D10 SINE Alu 1 116 -1 3 1234 1224 49 0 0 chr12 85137498 85137641 -36119889 + B1_Mus1 SINE Alu 3 145 -3 3 1234 342 0 0 0 chr12 85137641 85137679 -36119851 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 3 1234 214 344 21 0 chr12 85137745 85137838 -36119692 + ID_B1 SINE B4 66 160 -64 3 1234 292 267 53 0 chr12 85137766 85137841 -36119689 + B1_Mur4 SINE Alu 8 86 -64 3 1234 569 288 152 7 chr12 85138762 85139031 -36118499 - MER44A DNA MER2_type -22 317 10 3 1234 376 252 252 0 chr12 85139429 85139584 -36117946 + MIRb SINE MIR 40 233 -35 3 1234 493 256 215 28 chr12 85140002 85140179 -36117351 - MER20 DNA MER1_type -7 212 3 3 1234 21 0 0 0 chr12 85140875 85140896 -36116634 + AT_rich Low_complexity Low_complexity 1 21 0 3 1234 236 234 63 119 chr12 85142444 85142570 -36114960 + B2_Mm2 SINE B2 63 181 -14 3 1234 655 138 181 0 chr12 85142587 85142703 -36114827 - B1_Mus1 SINE Alu -9 139 3 3 1234 1235 61 0 0 chr12 85142840 85142987 -36114543 + B1_Mus2 SINE Alu 1 147 0 3 1234 196 28 83 0 chr12 85142987 85143023 -36114507 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 3 1234 1122 252 61 18 chr12 85143037 85143365 -36114165 + Lx8 LINE L1 6376 6717 -756 3 1234 716 282 35 35 chr12 85143369 85143597 -36113933 + B4A SINE B4 3 230 -62 3 1234 1149 202 15 10 chr12 85143597 85143802 -36113728 + B3 SINE B2 1 206 -10 3 1234 1242 48 7 0 chr12 85143820 85143966 -36113564 + B1_Mus1 SINE Alu 2 148 0 3 1234 779 280 157 19 chr12 85144183 85144547 -36112983 - Tigger9a DNA Tigger -156 576 163 3 1234 226 309 44 0 chr12 85144571 85144639 -36112891 - ID4 SINE ID -11 72 2 3 1234 332 228 46 171 chr12 85145074 85145233 -36112297 - B3A SINE B2 0 216 80 3 1234 2775 149 149 0 chr12 85145234 85145743 -36111787 + RMER4B LTR ERVK 1 585 0 3 1234 324 247 0 183 chr12 85145743 85145845 -36111685 - B3A SINE B2 -114 84 2 3 1234 1634 36 0 0 chr12 85145858 85146050 -36111480 - B2_Mm1a SINE B2 0 193 2 3 1234 185 296 56 14 chr12 85146055 85146127 -36111403 - L2 LINE L2 -1608 1811 1737 3 1234 789 99 59 30 chr12 85146217 85146352 -36111178 + B1_Mur4 SINE Alu 11 149 -1 3 1234 1788 126 28 148 chr12 85146435 85146552 -36110978 + ORR1B1 LTR MaLR 41 155 -239 3 1234 546 57 0 0 chr12 85146552 85146622 -36110908 + (CATA)n Simple_repeat Simple_repeat 2 71 0 3 1234 1788 126 28 148 chr12 85146622 85146896 -36110634 + ORR1B1 LTR MaLR 156 385 -9 3 1234 3636 134 10 14 chr12 85146901 85147490 -36110040 + ORR1B1-int LTR MaLR 1 587 -1376 3 1234 2542 110 29 8 chr12 85147476 85147851 -36109679 + ORR1B1-int LTR MaLR 878 1260 -703 3 1234 390 256 33 44 chr12 85147917 85148007 -36109523 + PB1D10 SINE Alu 21 109 -8 3 1234 356 314 80 8 chr12 85148056 85148181 -36109349 - B3A SINE B2 -10 188 55 3 1234 859 141 56 7 chr12 85148225 85148368 -36109162 - B1_Mur4 SINE Alu 0 150 1 3 1234 207 93 22 44 chr12 85148390 85148401 -36109129 + A-rich Low_complexity Low_complexity 3 12 0 3 1234 1413 100 16 0 chr12 85148401 85148591 -36108939 + B2_Mm2 SINE B2 1 193 -2 3 1234 207 93 22 44 chr12 85148591 85148624 -36108906 + A-rich Low_complexity Low_complexity 13 46 0 3 1234 840 37 0 52 chr12 85149576 85149691 -36107839 + B1_Mus2 SINE Alu 28 136 -11 3 1234 264 30 0 0 chr12 85149691 85149724 -36107806 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1234 432 304 87 40 chr12 85149734 85149787 -36107743 - L1MEb LINE L1 -5162 908 858 3 1234 891 94 0 0 chr12 85149787 85149914 -36107616 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 3 1234 574 183 39 0 chr12 85149914 85150018 -36107512 - PB1D9 SINE Alu -11 109 2 3 1234 432 304 87 40 chr12 85150018 85150216 -36107314 - L1MEb LINE L1 -5213 857 645 3 1234 363 314 6 71 chr12 85150394 85150430 -36107100 + ID_B1 SINE B4 56 212 -12 3 1234 476 252 23 38 chr12 85150430 85150562 -36106968 + B1F SINE Alu 8 137 -12 3 1234 413 221 0 0 chr12 85150717 85150794 -36106736 + PB1D10 SINE Alu 2 78 -39 3 1234 237 119 0 0 chr12 85150808 85150850 -36106680 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1234 1218 87 6 0 chr12 85150850 85151011 -36106519 - B2_Mm2 SINE B2 -16 179 18 3 1234 347 324 125 74 chr12 85151038 85151111 -36106419 + L1MC4 LINE L1 735 812 -5403 3 1234 1183 82 0 0 chr12 85151111 85151258 -36106272 + B1_Mus2 SINE Alu 1 147 0 3 1234 347 324 125 74 chr12 85151258 85151407 -36106123 + L1MC4 LINE L1 813 959 -5256 3 1234 1245 41 7 0 chr12 85151407 85151553 -36105977 + B1_Mus2 SINE Alu 1 147 0 3 1234 347 324 125 74 chr12 85151553 85151626 -36105904 + L1MC4 LINE L1 960 1046 -5169 3 1234 494 219 340 12 chr12 85152897 85153059 -36104471 - B3 SINE B2 -1 215 1 3 1234 29 0 0 0 chr12 85153068 85153097 -36104433 + AT_rich Low_complexity Low_complexity 1 29 0 3 1234 584 112 22 0 chr12 85153097 85153186 -36104344 - PB1D9 SINE Alu 0 120 30 3 1234 910 140 22 0 chr12 85153281 85153417 -36104113 - B1_Mus2 SINE Alu -1 146 8 3 1234 420 287 56 24 chr12 85154092 85154217 -36103313 - RSINE1 SINE B4 -32 133 5 3 1234 544 257 83 109 chr12 85154229 85154421 -36103109 - B3A SINE B2 -8 187 1 3 1234 371 87 171 14 chr12 85154700 85154770 -36102760 + MERVL_2A-int LTR ERVL 5679 5759 -2 3 1234 382 176 52 39 chr12 85154771 85154848 -36102682 + MT2B2 LTR ERVL 1 78 -506 3 1234 347 250 27 200 chr12 85154860 85155010 -36102520 + MT2B2 LTR ERVL 154 277 -324 3 1234 256 118 35 105 chr12 85154992 85155049 -36102481 + MLT2C2 LTR ERVL 31 83 -381 3 1234 468 239 103 0 chr12 85155047 85155164 -36102366 + B1F SINE Alu 20 148 -1 3 1234 224 65 0 0 chr12 85155172 85155203 -36102327 + B3A SINE B2 7 37 -161 3 1234 562 165 0 0 chr12 85155213 85155304 -36102226 + PB1D9 SINE Alu 1 91 -29 3 1234 298 252 177 23 chr12 85155372 85155502 -36102028 + MLT2C2 LTR ERVL 215 364 -33 3 1234 382 245 114 29 chr12 85155659 85155764 -36101766 + B1_Mur3 SINE Alu 1 114 -35 3 1234 201 74 0 0 chr12 85156226 85156253 -36101277 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1234 1109 43 64 7 chr12 85156269 85156409 -36101121 - B1_Mus1 SINE Alu 0 148 1 3 1234 283 196 19 0 chr12 85157529 85157590 -36099940 - PB1D10 SINE Alu 0 149 64 3 1234 566 259 162 0 chr12 85157714 85157899 -36099631 - ID_B1 SINE B4 -8 216 2 3 1234 460 286 44 15 chr12 85158101 85158236 -36099294 - MER58A DNA MER1_type -48 176 38 3 1234 1093 61 127 6 chr12 85158404 85158569 -36098961 + B2_Mm2 SINE B2 10 194 -1 3 1234 366 347 74 18 chr12 85159289 85159506 -36098024 - L2a LINE L2 0 3426 3198 3 1234 233 314 56 14 chr12 85159628 85159699 -36097831 - ID4 SINE ID -6 77 4 3 1234 696 125 88 9 chr12 85159801 85159914 -36097616 - B1_Mur2 SINE Alu 0 149 28 3 1234 2971 77 17 30 chr12 85160159 85160477 -36097053 + MTB LTR MaLR 3 320 -80 3 1234 1167 50 0 21 chr12 85160477 85160614 -36096916 + B1_Mus1 SINE Alu 1 136 -12 3 1234 188 35 35 0 chr12 85160614 85160643 -36096887 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1234 2971 77 17 30 chr12 85160649 85160733 -36096797 + MTB LTR MaLR 321 400 0 3 1234 207 0 0 0 chr12 85160896 85160919 -36096611 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1234 1377 80 21 0 chr12 85160922 85161110 -36096420 + B2_Mm1t SINE B2 2 193 0 3 1234 207 0 0 0 chr12 85161204 85161227 -36096303 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1234 598 301 150 46 chr12 85161257 85161497 -36096033 - B4 SINE B4 -27 265 1 3 1234 510 280 112 63 chr12 85162433 85162639 -36094891 - ID_B1 SINE B4 0 224 9 3 1234 412 301 51 19 chr12 85162790 85162946 -36094584 + RSINE1 SINE B4 3 163 -2 3 1234 2124 105 38 19 chr12 85163101 85163420 -36094110 + ORR1A4 LTR MaLR 5 329 0 3 1234 417 179 13 13 chr12 85163606 85163685 -36093845 - B1_Mur2 SINE Alu -1 148 70 4 1234 882 239 48 5 chr12 85163707 85163913 -36093617 - B3 SINE B2 0 216 2 4 1234 560 273 27 20 chr12 85164029 85164175 -36093355 - B1F1 SINE Alu 0 149 3 4 1234 566 225 70 28 chr12 85164200 85164342 -36093188 + B1_Mur2 SINE Alu 1 148 -1 4 1234 249 176 33 50 chr12 85164491 85164551 -36092979 + ID SINE ID 7 65 -159 4 1234 267 203 26 104 chr12 85164503 85164580 -36092950 + BC1_Mm scRNA scRNA 15 85 -67 4 1234 462 254 193 22 chr12 85164666 85164706 -36092824 + ID SINE ID 3 50 -174 4 1234 207 0 0 0 chr12 85164706 85164729 -36092801 + (CGTG)n Simple_repeat Simple_repeat 1 23 0 4 1234 462 254 193 22 chr12 85164729 85164869 -36092661 + ID_B1 SINE B4 51 214 -10 4 1234 266 247 174 33 chr12 85164920 85165012 -36092518 + PB1 SINE Alu 21 125 -2 4 1234 444 222 126 8 chr12 85165105 85165232 -36092298 + MIR SINE MIR 1 142 -120 4 1234 467 232 37 13 chr12 85165243 85165422 -36092108 - B3A SINE B2 -12 181 1 4 1234 232 228 35 81 chr12 85165425 85165511 -36092019 - ID4_ SINE ID 0 83 2 4 1234 249 29 52 91 chr12 85165967 85166044 -36091486 + A-rich Low_complexity Low_complexity 2 75 0 4 1234 462 284 24 57 chr12 85166662 85166785 -36090745 + PB1 SINE Alu 9 127 0 4 1234 252 202 85 37 chr12 85167202 85167284 -36090246 - L3 LINE CR1 -4339 150 65 4 1234 634 141 165 0 chr12 85167308 85167429 -36090101 - B1_Mur2 SINE Alu 0 149 9 4 1234 542 148 9 0 chr12 85168179 85168294 -36089236 + GA-rich Low_complexity Low_complexity 1 116 0 4 1234 247 49 0 68 chr12 85168554 85168598 -36088932 + B1_Mur4 SINE Alu 110 150 0 4 1234 186 43 0 0 chr12 85168598 85168621 -36088909 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1234 858 133 49 7 chr12 85169337 85169481 -36088049 - B1_Mur4 SINE Alu 0 150 1 4 1234 762 288 60 14 chr12 85169608 85169826 -36087704 - B4A SINE B4 -63 229 2 4 1234 987 230 10 20 chr12 85170028 85170223 -36087307 - B3 SINE B2 -23 193 1 4 1234 216 264 111 0 chr12 85170450 85170522 -36087008 + ID2 SINE ID 4 83 0 4 1234 780 254 10 50 chr12 85170665 85170864 -36086666 - B3A SINE B2 -1 197 7 4 1234 273 267 116 0 chr12 85170931 85171017 -36086513 + ID_B1 SINE B4 83 178 -46 4 1234 237 284 56 56 chr12 85170934 85171042 -36086488 + PB1D10 SINE Alu 5 112 -5 4 1234 513 141 0 0 chr12 85171109 85171194 -36086336 + (GGGA)n Simple_repeat Simple_repeat 2 86 0 4 1234 1154 40 40 0 chr12 85172499 85172648 -36084882 - L1_Mus2 LINE L1 -6 6560 6406 4 1234 517 81 14 0 chr12 85172652 85172726 -36084804 + L1_Mus2 LINE L1 6340 6414 -152 4 1234 617 250 36 36 chr12 85173287 85173424 -36084106 + RSINE1 SINE B4 1 137 -28 4 1234 368 324 77 9 chr12 85173455 85173676 -36083854 + L1MDa LINE L1 660 895 -5652 4 1234 488 230 35 9 chr12 85174130 85174244 -36083286 - ID_B1 SINE B4 -103 121 5 4 1234 408 247 40 118 chr12 85174344 85174544 -36082986 + L1MDa LINE L1 1171 1352 -5288 4 1234 1141 65 0 0 chr12 85174544 85174682 -36082848 + B1_Mus2 SINE Alu 1 138 -9 4 1234 369 0 0 0 chr12 85174682 85174723 -36082807 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1234 408 246 38 124 chr12 85174723 85174751 -36082779 + L1MDa LINE L1 1353 1373 -5267 4 1234 350 284 19 8 chr12 85174871 85175034 -36082496 - L1MD LINE L1 -720 5639 5474 4 1234 374 230 56 22 chr12 85175141 85175230 -36082300 - B1F SINE Alu -57 92 1 4 1234 346 287 84 38 chr12 85175333 85175469 -36082061 - B1F1 SINE Alu 0 149 2 4 1234 780 262 17 6 chr12 85175507 85175680 -36081850 - B3 SINE B2 -10 206 32 4 1234 949 282 108 29 chr12 85175740 85176298 -36081232 - L1MB4 LINE L1 -51 6129 5528 4 1234 392 111 3 0 chr12 85176619 85176676 -36080854 + B1_Mus2 SINE Alu 83 140 -9 4 1234 180 0 0 0 chr12 85176676 85176696 -36080834 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1234 213 206 0 73 chr12 85176789 85176857 -36080673 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 4 1234 325 135 333 26 chr12 85176876 85176990 -36080540 - B2_Mm2 SINE B2 0 195 47 4 1234 982 115 0 0 chr12 85177012 85177151 -36080379 - B2_Mm2 SINE B2 -55 140 2 4 1234 233 301 76 95 chr12 85178254 85178307 -36079223 - MT2B LTR ERVL -286 315 181 4 1234 473 263 71 0 chr12 85178307 85178406 -36079124 - PB1D9 SINE Alu -13 107 2 4 1234 732 265 0 44 chr12 85178456 85178535 -36078995 - RSINE1 SINE B4 -3 162 84 4 1234 2637 176 140 15 chr12 85178535 85179148 -36078382 + RMER6C LTR ERVK 1 690 0 4 1234 732 265 0 44 chr12 85179148 85179226 -36078304 - RSINE1 SINE B4 -82 83 12 4 1234 588 14 0 0 chr12 85179273 85179342 -36078188 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1234 1038 110 0 0 chr12 85179342 85179487 -36078043 - B1_Mur4 SINE Alu -4 146 2 4 1234 474 33 0 0 chr12 85179615 85179675 -36077855 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1234 239 250 40 0 chr12 85179822 85179898 -36077632 + L1MEg1 LINE L1 503 581 -5654 4 1234 332 242 96 19 chr12 85179923 85179944 -36077586 - PB1D10 SINE Alu -1 119 60 4 1234 337 280 0 0 chr12 85179944 85180019 -36077511 - ID_B1 SINE B4 -56 168 94 4 1234 332 242 96 19 chr12 85180019 85180037 -36077493 - PB1D10 SINE Alu -1 59 1 4 1234 242 259 0 49 chr12 85180253 85180314 -36077216 + B1F2 SINE Alu 12 69 -80 4 1234 274 208 38 0 chr12 85180301 85180354 -36077176 - B3A SINE B2 -143 55 1 4 1234 328 298 42 11 chr12 85180420 85180515 -36077015 + L2a LINE L2 2801 2898 -521 4 1234 616 91 34 28 chr12 85180860 85180980 -36076550 + B2_Mm2 SINE B2 1 192 -1 4 1234 456 334 152 48 chr12 85181136 85181576 -36075954 + L2a LINE L2 2941 3426 0 4 1234 1253 99 39 0 chr12 85181948 85182130 -36075400 + B2_Mm2 SINE B2 2 190 -5 4 1234 476 269 42 21 chr12 85182327 85182471 -36075059 + B1F SINE Alu 3 149 0 4 1234 236 192 16 48 chr12 85182475 85182565 -36074965 + ID2 SINE ID 3 83 0 4 1234 1816 112 30 57 chr12 85182823 85183154 -36074376 + RLTRETN_Mm LTR ERVK 1 322 0 4 1234 505 294 63 38 chr12 85183522 85183681 -36073849 - ID_B1 SINE B4 -61 163 1 4 1234 225 299 139 55 chr12 85184070 85184272 -36073258 + L2a LINE L2 3205 3423 -3 4 1234 319 324 58 17 chr12 85184362 85184535 -36072995 + MIRb SINE MIR 36 215 -53 4 1234 230 270 50 0 chr12 85184556 85184630 -36072900 - PB1D10 SINE Alu -28 99 13 4 1234 194 381 157 17 chr12 85184655 85184844 -36072686 + L2 LINE L2 2704 2909 -510 4 1234 1323 60 27 0 chr12 85184844 85185027 -36072503 - B2_Mm1a SINE B2 -5 188 1 4 1234 194 381 157 17 chr12 85185027 85185136 -36072394 + L2 LINE L2 2910 3043 -376 4 1234 849 190 7 0 chr12 85186105 85186247 -36071283 + B1_Mur3 SINE Alu 1 143 -6 4 1234 1267 34 0 0 chr12 85186456 85186603 -36070927 - B1_Mus1 SINE Alu 0 148 2 4 1234 1199 61 0 0 chr12 85187212 85187359 -36070171 + B1_Mm SINE Alu 1 147 0 4 1234 197 94 29 72 chr12 85187361 85187430 -36070100 + A-rich Low_complexity Low_complexity 1 66 0 4 1234 2508 77 0 6 chr12 85187449 85187777 -36069753 + ORR1A3 LTR MaLR 1 326 0 4 1234 1172 134 6 0 chr12 85188175 85188354 -36069176 + URR1B DNA MER1_type 46 225 0 4 1234 317 232 22 34 chr12 85188635 85188724 -36068806 - ID_B1 SINE B4 -2 222 135 4 1234 207 100 0 0 chr12 85188766 85188796 -36068734 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 4 1234 638 78 11 0 chr12 85188910 85189000 -36068530 + ORR1A4 LTR MaLR 239 329 0 4 1234 1561 53 0 0 chr12 85190238 85190426 -36067104 + B2_Mm1t SINE B2 1 188 -5 4 1234 416 300 69 28 chr12 85190854 85190998 -36066532 - RSINE1 SINE B4 -13 152 3 4 1234 219 323 0 0 chr12 85191146 85191208 -36066322 + PB1D10 SINE Alu 35 96 -21 4 1234 295 291 0 37 chr12 85191499 85191606 -36065924 + GA-rich Low_complexity Low_complexity 2 104 0 4 1234 500 286 17 26 chr12 85191876 85191991 -36065539 - RSINE1 SINE B4 -50 115 2 4 1234 767 294 0 5 chr12 85192439 85192644 -36064886 - B3 SINE B2 -11 205 2 4 1234 641 177 52 26 chr12 85192673 85192789 -36064741 - B1_Mur2 SINE Alu -16 133 15 4 1234 416 298 23 39 chr12 85192683 85192812 -36064718 - ID_B1 SINE B4 -20 204 78 4 1234 302 190 71 16 chr12 85193768 85193860 -36063670 - MER104 DNA Tc2 -19 162 68 4 1234 231 319 7 28 chr12 85193955 85194097 -36063433 - L1M5 LINE L1 -3819 2396 2258 4 1234 27 0 0 0 chr12 85194229 85194256 -36063274 + AT_rich Low_complexity Low_complexity 1 27 0 4 1234 355 223 0 13 chr12 85194309 85194393 -36063137 + ID4_ SINE ID 30 110 -42 4 1234 1169 123 18 0 chr12 85194466 85194637 -36062893 - B2_Mm2 SINE B2 -21 174 1 4 1234 24 0 0 0 chr12 85194713 85194737 -36062793 + AT_rich Low_complexity Low_complexity 1 24 0 4 1234 1152 44 0 0 chr12 85194840 85194975 -36062555 + B1_Mm SINE Alu 1 135 -12 4 1234 411 21 0 0 chr12 85194975 85195023 -36062507 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 4 1234 727 253 39 0 chr12 85195023 85195177 -36062353 + B3 SINE B2 24 183 -33 4 1234 401 226 93 39 chr12 85195339 85195468 -36062062 + MTEa LTR MaLR 244 379 0 4 1234 274 183 208 38 chr12 85195739 85195800 -36061730 - RMER17C LTR ERVK -135 275 211 4 1234 719 60 0 20 chr12 85195800 85195902 -36061628 + (GGGAA)n Simple_repeat Simple_repeat 2 101 0 4 1234 274 183 208 38 chr12 85195902 85195999 -36061531 - RMER17C LTR ERVK -200 210 90 4 1234 535 357 25 0 chr12 85196003 85196202 -36061328 - MIR SINE MIR -57 205 2 4 1234 683 233 7 1 chr12 85196370 85196517 -36061013 + MIRb SINE MIR 32 181 -81 4 1235 21 36 0 0 chr12 85197175 85197203 -36060327 + AT_rich Low_complexity Low_complexity 1 28 0 4 1235 865 215 112 11 chr12 85197835 85197860 -36059670 - B3 SINE B2 -9 207 183 4 1235 345 24 0 0 chr12 85197860 85197902 -36059628 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1235 865 215 112 11 chr12 85197902 85198064 -36059466 - B3 SINE B2 -34 182 2 4 1235 244 265 138 46 chr12 85198143 85198230 -36059300 - RSINE1 SINE B4 -69 96 2 5 1235 23 54 0 0 chr12 85198589 85198626 -36058904 + AT_rich Low_complexity Low_complexity 1 37 0 5 1235 2121 100 55 0 chr12 85198754 85199064 -36058466 + ORR1A2 LTR MaLR 1 327 0 5 1235 10126 114 117 46 chr12 85199064 85199922 -36057608 + ORR1A2-int LTR MaLR 1 1041 -922 5 1235 1188 62 0 0 chr12 85199922 85200066 -36057464 + B1_Mm SINE Alu 4 147 0 5 1235 10126 114 117 46 chr12 85200066 85201041 -36056489 + ORR1A2-int LTR MaLR 1042 1963 0 5 1235 2134 73 59 16 chr12 85201041 85201347 -36056183 + ORR1A2 LTR MaLR 1 319 -8 5 1235 582 254 70 12 chr12 85201511 85201693 -36055837 - MTE-int LTR MaLR -1356 224 9 5 1235 1068 240 111 80 chr12 85201705 85202067 -36055463 - MTEa LTR MaLR -2 377 5 5 1235 911 191 120 16 chr12 85202097 85202288 -36055242 - B3 SINE B2 -5 211 1 5 1235 307 39 58 0 chr12 85202532 85202584 -36054946 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 1235 382 265 0 12 chr12 85202604 85202688 -36054842 + B1_Mur1 SINE Alu 56 138 -11 5 1235 230 204 20 0 chr12 85203262 85203311 -36054219 - PB1D10 SINE Alu -15 102 53 5 1235 21 0 0 0 chr12 85203572 85203593 -36053937 + AT_rich Low_complexity Low_complexity 1 21 0 5 1235 315 282 59 68 chr12 85203691 85203809 -36053721 + PB1D10 SINE Alu 1 117 0 5 1235 2853 70 44 3 chr12 85203835 85204219 -36053311 - MTB LTR MaLR 0 400 1 5 1235 632 171 0 18 chr12 85204298 85204411 -36053119 - B1_Mur4 SINE Alu -12 138 28 5 1235 307 340 9 0 chr12 85204453 85204559 -36052971 - L1MC4 LINE L1 -152 7890 7784 5 1235 3836 91 5 23 chr12 85204626 85205187 -36052343 + L1_Mus2 LINE L1 6015 6565 -1 5 1235 276 30 0 0 chr12 85205260 85205293 -36052237 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1235 269 313 55 12 chr12 85205309 85205474 -36052056 - L1MC4 LINE L1 -381 7661 7490 5 1235 697 184 190 54 chr12 85205509 85205693 -36051837 - ORR1C2 LTR MaLR -175 209 1 5 1235 32 0 0 0 chr12 85205759 85205791 -36051739 + AT_rich Low_complexity Low_complexity 1 32 0 5 1235 614 230 53 20 chr12 85205791 85205942 -36051588 - B3 SINE B2 -60 156 1 5 1235 744 71 0 0 chr12 85206041 85206140 -36051390 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 5 1235 430 291 122 6 chr12 85206643 85206823 -36050707 + Lx8 LINE L1 7028 7228 -245 5 1235 384 272 62 12 chr12 85206838 85206998 -36050532 + Lx8 LINE L1 7304 7471 -2 5 1235 1174 69 97 11 chr12 85207009 85207185 -36050345 + B2_Mm1t SINE B2 2 192 -1 5 1235 363 145 14 55 chr12 85207195 85207268 -36050262 + RLTR25A LTR ERVK 507 576 -527 5 1235 763 89 0 0 chr12 85207211 85207312 -36050218 + B1_Mus2 SINE Alu 47 147 0 5 1235 219 139 0 0 chr12 85207312 85207348 -36050182 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1235 607 220 25 0 chr12 85208733 85208851 -36048679 - ID_B1 SINE B4 -5 219 99 5 1235 1417 66 16 0 chr12 85208873 85209056 -36048474 - B2_Mm1t SINE B2 -7 186 1 5 1235 243 0 0 0 chr12 85209084 85209111 -36048419 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1235 600 186 93 0 chr12 85209123 85209241 -36048289 - B1_Mur2 SINE Alu -16 133 5 5 1235 416 272 101 14 chr12 85209300 85209438 -36048092 + Lx8 LINE L1 7079 7228 -245 5 1235 470 288 90 15 chr12 85209580 85209781 -36047749 + Lx8 LINE L1 7256 7471 -2 5 1235 482 242 141 22 chr12 85209785 85209920 -36047610 + B4A SINE B4 3 153 -139 5 1235 1179 55 0 0 chr12 85209958 85210104 -36047426 + B1_Mus1 SINE Alu 2 147 -1 5 1235 211 229 0 0 chr12 85210105 85210153 -36047377 + A-rich Low_complexity Low_complexity 1 48 0 5 1235 3545 220 101 51 chr12 85210281 85211376 -36046154 + Lx7 LINE L1 6181 7330 -366 5 1235 283 242 15 15 chr12 85211517 85211584 -36045946 + RSINE1 SINE B4 45 111 -54 5 1235 377 321 47 0 chr12 85211790 85211896 -36045634 + RSINE1 SINE B4 40 150 -15 5 1235 297 0 0 0 chr12 85211939 85211972 -36045558 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1235 450 0 0 0 chr12 85211972 85212021 -36045509 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1235 1422 84 11 0 chr12 85212043 85212234 -36045296 + B2_Mm1t SINE B2 1 193 0 5 1235 1105 68 0 52 chr12 85212256 85212411 -36045119 + B1_Mus2 SINE Alu 1 147 0 5 1235 456 327 39 91 chr12 85213279 85213588 -36043942 + MLT2B3 LTR ERVL 3 295 -259 5 1235 180 176 0 0 chr12 85213934 85213968 -36043562 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1235 762 198 44 28 chr12 85213971 85214153 -36043377 - Lx9 LINE L1 -179 7465 7281 5 1235 727 199 0 40 chr12 85214156 85214308 -36043222 - B1_Mus2 SINE Alu -1 146 1 5 1235 693 243 157 0 chr12 85214327 85214512 -36043018 - B3 SINE B2 -2 214 1 5 1235 321 241 0 155 chr12 85214522 85214625 -36042905 - PB1D10 SINE Alu -4 113 27 5 1235 523 265 13 134 chr12 85214675 85214832 -36042698 - B1F2 SINE Alu -8 141 4 5 1235 410 271 19 171 chr12 85214832 85214880 -36042650 - ID_B1 SINE B4 -8 216 43 5 1235 738 226 27 0 chr12 85214896 85215042 -36042488 + RSINE1 SINE B4 15 164 -1 5 1235 1127 52 0 0 chr12 85215074 85215209 -36042321 + B1_Mus1 SINE Alu 1 135 -13 5 1235 222 37 0 0 chr12 85215209 85215236 -36042294 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1235 501 71 0 0 chr12 85215252 85215322 -36042208 - B1_Mus1 SINE Alu -77 71 2 5 1235 180 158 0 0 chr12 85215338 85215376 -36042154 + A-rich Low_complexity Low_complexity 1 38 0 5 1235 1246 294 93 29 chr12 85215386 85215838 -36041692 + MLT1G3 LTR MaLR 1 481 -114 5 1235 213 39 0 0 chr12 85215894 85215920 -36041610 + (TTTTTA)n Simple_repeat Simple_repeat 2 27 0 5 1235 683 194 14 29 chr12 85216874 85217012 -36040518 + B1_Mur1 SINE Alu 14 149 0 5 1235 797 241 36 77 chr12 85217335 85217555 -36039975 + B3 SINE B2 1 211 -5 5 1235 254 314 86 36 chr12 85217840 85217979 -36039551 + RSINE1 SINE B4 3 148 -17 5 1235 225 0 0 0 chr12 85218009 85218034 -36039496 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1235 395 219 0 24 chr12 85218676 85218785 -36038745 + B1F SINE Alu 49 149 0 5 1235 1168 48 7 0 chr12 85218788 85218934 -36038596 + B1_Mus2 SINE Alu 1 147 0 5 1235 500 252 43 0 chr12 85218973 85219088 -36038442 + ID_B1 SINE B4 103 222 -2 5 1235 1204 165 41 29 chr12 85219115 85219358 -36038172 - MTD LTR MaLR -8 411 166 5 1235 282 29 0 0 chr12 85219447 85219482 -36038048 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 5 1235 660 214 7 28 chr12 85219537 85219681 -36037849 - MTD LTR MaLR -275 144 4 5 1235 883 177 20 0 chr12 85219804 85219951 -36037579 + B1_Mur4 SINE Alu 1 150 0 5 1235 183 100 0 0 chr12 85219952 85219982 -36037548 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 1235 301 376 69 0 chr12 85220040 85220229 -36037301 - MIR SINE MIR -2 260 59 5 1235 515 182 70 63 chr12 85220229 85220387 -36037143 + Lx7 LINE L1 7536 7694 -2 5 1235 1176 62 0 0 chr12 85220609 85220755 -36036775 - B1_Mus2 SINE Alu 0 147 2 5 1235 413 221 0 0 chr12 85220802 85220870 -36036660 + ID4_ SINE ID 13 80 -3 5 1235 189 0 0 0 chr12 85220881 85220902 -36036628 + (ATG)n Simple_repeat Simple_repeat 1 21 0 5 1235 534 133 0 0 chr12 85221663 85221753 -36035777 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 1235 1394 194 70 118 chr12 85221894 85222292 -36035238 + MTE2a LTR MaLR 1 379 0 5 1235 543 244 74 0 chr12 85222444 85222579 -36034951 + B1F1 SINE Alu 3 147 -2 5 1235 267 31 0 0 chr12 85222883 85222915 -36034615 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1235 1138 82 0 0 chr12 85222915 85223062 -36034468 - B1_Mus2 SINE Alu 0 147 1 5 1235 1609 164 160 9 chr12 85223126 85223557 -36033973 + BGLII_B LTR ERVK 1 435 -6 5 1235 373 231 63 40 chr12 85223703 85223829 -36033701 + BGLII_B LTR ERVK 424 552 -1 5 1235 339 303 31 68 chr12 85224144 85224307 -36033223 + ID_B1 SINE B4 1 157 -67 5 1235 316 296 20 20 chr12 85224241 85224341 -36033189 + PB1D10 SINE Alu 12 111 -6 5 1235 613 122 8 129 chr12 85224369 85224410 -36033120 + B2_Mm2 SINE B2 2 35 -160 5 1235 1086 73 7 0 chr12 85224410 85224547 -36032983 + B1_Mus2 SINE Alu 3 140 -7 5 1235 315 0 0 0 chr12 85224548 85224583 -36032947 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 5 1235 613 122 8 129 chr12 85224583 85224671 -36032859 + B2_Mm2 SINE B2 36 117 -78 5 1235 582 86 0 0 chr12 85224686 85224767 -36032763 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 1235 295 192 137 0 chr12 85224847 85224920 -36032610 - ID_B1 SINE B4 -39 185 103 5 1235 203 204 19 0 chr12 85225040 85225094 -36032436 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 5 1235 185 0 0 39 chr12 85225522 85225548 -36031982 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1235 2727 44 68 37 chr12 85226249 85226603 -36030927 + RLTR10B2 LTR ERVK 1 365 0 5 1235 258 200 27 41 chr12 85227925 85227998 -36029532 + MMERVK10C-int LTR ERVK 2124 2195 -4724 5 1235 536 290 74 41 chr12 85228532 85228899 -36028631 + MMERVK10C-int LTR ERVK 3083 3461 -4120 5 1235 330 255 77 91 chr12 85230276 85230634 -36026896 + ETnERV2-int LTR ERVK 4851 5527 -1879 5 1235 3281 45 8 2 chr12 85230653 85231051 -36026479 - MTB LTR MaLR 0 400 1 5 1235 263 286 0 0 chr12 85232377 85232447 -36025083 + MMERVK10C-int LTR ERVK 6562 6631 -950 5 1235 672 278 30 122 chr12 85233543 85233725 -36023805 + B3A SINE B2 1 168 -30 5 1235 183 100 0 0 chr12 85233725 85233755 -36023775 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1235 321 278 30 122 chr12 85233755 85233769 -36023761 + B2_Mm1t SINE B2 163 179 -14 5 1235 2239 158 21 40 chr12 85233841 85234256 -36023274 + Lx4B LINE L1 6628 7036 -22 5 1235 207 0 0 0 chr12 85234256 85234279 -36023251 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1235 864 164 27 0 chr12 85234698 85234844 -36022686 - B1_Mur4 SINE Alu 0 150 1 5 1235 335 247 11 66 chr12 85234872 85234963 -36022567 - B3A SINE B2 -112 86 1 5 1235 658 296 91 30 chr12 85235159 85235531 -36021999 - MER20B DNA MER1_type -198 585 191 5 1235 290 225 32 43 chr12 85235718 85235811 -36021719 + PB1D10 SINE Alu 26 117 0 6 1235 739 273 136 19 chr12 85236038 85236296 -36021234 + B4A SINE B4 1 288 -4 6 1235 697 185 20 40 chr12 85236358 85236500 -36021030 + B1_Mur4 SINE Alu 1 140 -10 6 1235 205 29 29 29 chr12 85236500 85236535 -36020995 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1235 551 161 0 21 chr12 85237122 85237217 -36020313 + B1_Mur3 SINE Alu 45 137 -12 6 1235 1202 35 0 0 chr12 85237217 85237358 -36020172 + B1_Mm SINE Alu 2 142 -5 6 1235 351 0 0 0 chr12 85237360 85237399 -36020131 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1235 657 0 0 0 chr12 85237466 85237539 -36019991 + (GGAGA)n Simple_repeat Simple_repeat 5 77 0 6 1235 1094 80 0 0 chr12 85237540 85237678 -36019852 + B1_Mus2 SINE Alu 5 142 -5 6 1235 951 57 0 0 chr12 85237678 85237800 -36019730 + (GGA)n Simple_repeat Simple_repeat 3 124 0 6 1235 685 269 52 48 chr12 85237805 85238075 -36019455 + B4 SINE B4 3 273 -19 6 1235 306 0 0 0 chr12 85238083 85238117 -36019413 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1235 216 0 0 0 chr12 85238306 85238330 -36019200 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1235 284 47 0 0 chr12 85238398 85238441 -36019089 - L1Md_F2 LINE L1 -12 6570 6528 6 1235 219 288 15 15 chr12 85238441 85238508 -36019022 + ID4 SINE ID 6 72 -11 6 1235 771 207 7 0 chr12 85238540 85238675 -36018855 + RSINE1 SINE B4 2 137 -28 6 1235 200 196 39 19 chr12 85238779 85238831 -36018699 + GA-rich Low_complexity Low_complexity 2 54 0 6 1235 399 177 82 0 chr12 85238855 85238993 -36018537 + B3 SINE B2 20 212 -4 6 1235 889 195 87 0 chr12 85239026 85239221 -36018309 - B3 SINE B2 -4 212 1 6 1235 1095 68 0 0 chr12 85239280 85239413 -36018117 + B1_Mm SINE Alu 2 134 -13 6 1235 294 193 74 58 chr12 85239898 85240019 -36017511 + B1F SINE Alu 18 140 -9 6 1235 636 108 226 32 chr12 85240319 85240443 -36017087 + B1_Mur3 SINE Alu 2 149 0 6 1235 451 204 0 109 chr12 85241121 85241231 -36016299 - PB1D9 SINE Alu -13 107 10 6 1235 282 187 0 213 chr12 85241146 85241268 -36016262 - MT2B LTR ERVL -364 237 142 6 1235 441 0 0 0 chr12 85241509 85241558 -36015972 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1235 379 309 0 0 chr12 85241611 85241705 -36015825 + RSINE1 SINE B4 12 105 -60 6 1235 855 68 0 0 chr12 85241745 85241862 -36015668 - B1_Mus2 SINE Alu -2 145 29 6 1235 22 56 0 0 chr12 85242326 85242362 -36015168 + AT_rich Low_complexity Low_complexity 1 36 0 6 1235 394 182 0 168 chr12 85242785 85242904 -36014626 - PB1D9 SINE Alu -13 107 9 6 1235 524 263 79 14 chr12 85243140 85243279 -36014251 - B1F2 SINE Alu -1 148 1 6 1235 21 0 0 0 chr12 85243281 85243302 -36014228 + AT_rich Low_complexity Low_complexity 1 21 0 6 1235 266 278 0 0 chr12 85243461 85243533 -36013997 - L1MD3 LINE L1 -2000 5995 5924 6 1235 920 185 0 25 chr12 85243536 85243698 -36013832 + B3A SINE B2 1 157 -41 6 1235 234 0 0 0 chr12 85243698 85243724 -36013806 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1235 475 251 52 93 chr12 85243724 85243754 -36013776 + B2_Mm1t SINE B2 152 185 -8 6 1235 375 289 127 14 chr12 85243815 85244036 -36013494 - L1MD3 LINE L1 -368 5811 5566 6 1235 1381 164 72 166 chr12 85244096 85244249 -36013281 + ORR1C1 LTR MaLR 1 155 -223 6 1235 213 39 0 0 chr12 85244249 85244275 -36013255 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 6 1235 1381 164 72 166 chr12 85244275 85244538 -36012992 + ORR1C1 LTR MaLR 156 378 0 6 1235 389 127 0 16 chr12 85245112 85245176 -36012354 + RLTR41 LTR ERV1 318 380 -66 6 1235 302 98 0 19 chr12 85245178 85245230 -36012300 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 6 1235 750 258 0 0 chr12 85245375 85245526 -36012004 + RSINE1 SINE B4 11 161 -4 6 1235 836 288 53 8 chr12 85245837 85246103 -36011427 - B4A SINE B4 -14 278 1 6 1235 348 312 79 6 chr12 85246155 85246332 -36011198 + MIR SINE MIR 29 218 -44 6 1235 25 0 0 0 chr12 85246625 85246650 -36010880 + AT_rich Low_complexity Low_complexity 1 25 0 6 1235 365 242 10 71 chr12 85246737 85246833 -36010697 + B4A SINE B4 6 95 -197 6 1235 1149 77 18 0 chr12 85246833 85247002 -36010528 + B2_Mm2 SINE B2 1 172 -23 6 1235 581 236 0 60 chr12 85246999 85247148 -36010382 + B4A SINE B4 82 221 -71 6 1235 940 154 141 21 chr12 85247162 85247354 -36010176 + B3 SINE B2 2 216 0 6 1235 280 308 15 0 chr12 85247378 85247443 -36010087 + B4A SINE B4 227 292 0 6 1235 438 65 0 0 chr12 85247443 85247505 -36010025 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1235 1251 166 8 64 chr12 85247506 85247757 -36009773 - Lx9 LINE L1 -516 7128 6892 6 1235 215 337 32 32 chr12 85247995 85248017 -36009513 - BC1_Mm scRNA scRNA -56 96 44 6 1235 227 345 0 0 chr12 85248017 85248075 -36009455 - tRNA-Ala-GCY_ tRNA tRNA -7 68 11 6 1235 215 337 32 32 chr12 85248075 85248090 -36009440 - BC1_Mm scRNA scRNA -56 43 2 6 1235 240 338 60 20 chr12 85248241 85248392 -36009138 + L1M5 LINE L1 5533 5689 -435 6 1235 1074 168 67 20 chr12 85248407 85248602 -36008928 + B3 SINE B2 5 208 -8 6 1235 1109 81 0 7 chr12 85248623 85248772 -36008758 + B1_Mus1 SINE Alu 1 148 0 6 1235 494 230 8 42 chr12 85249043 85249161 -36008369 + PB1D10 SINE Alu 4 117 0 6 1235 585 228 7 49 chr12 85249311 85249454 -36008076 - B1_Mur1 SINE Alu -10 139 3 6 1235 414 0 0 0 chr12 85249790 85249836 -36007694 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1235 636 134 214 0 chr12 85249840 85249952 -36007578 - B1_Mus1 SINE Alu -11 137 2 6 1235 443 248 189 23 chr12 85249977 85250241 -36007289 - L1MA5A LINE L1 -2 6295 5988 6 1235 630 246 171 6 chr12 85250897 85251073 -36006457 + B3 SINE B2 2 206 -10 6 1235 25 51 0 0 chr12 85251199 85251238 -36006292 + AT_rich Low_complexity Low_complexity 1 39 0 6 1235 225 279 82 0 chr12 85251331 85251392 -36006138 - ID4 SINE ID 0 83 18 6 1235 336 296 104 58 chr12 85251484 85251638 -36005892 - RSINE1 SINE B4 -3 162 2 6 1235 315 141 179 0 chr12 85251659 85251737 -36005793 - B3A SINE B2 -80 118 27 6 1235 673 252 29 29 chr12 85251753 85251961 -36005569 - B3 SINE B2 -7 209 2 6 1235 305 224 0 3 chr12 85252007 85252089 -36005441 - L1M4 LINE L1 -490 5689 5610 6 1235 434 259 0 9 chr12 85252301 85252414 -36005116 - ID_B1 SINE B4 -8 216 105 6 1235 416 261 8 51 chr12 85252558 85252675 -36004855 - PB1D10 SINE Alu 0 117 6 6 1235 529 201 73 84 chr12 85252684 85252948 -36004582 - L1M4 LINE L1 -712 5472 5214 6 1235 446 263 8 0 chr12 85253119 85253237 -36004293 + B1F1 SINE Alu 29 147 -2 6 1235 743 224 5 117 chr12 85253562 85253784 -36003746 - B3A SINE B2 0 198 2 6 1235 25 51 0 0 chr12 85254063 85254102 -36003428 + AT_rich Low_complexity Low_complexity 1 39 0 6 1235 396 197 45 16 chr12 85254312 85254425 -36003105 + ORR1E LTR MaLR 32 161 -213 6 1235 3244 264 122 75 chr12 85254593 85256051 -36001479 + MTE-int LTR MaLR 1 1528 -52 6 1235 641 310 122 25 chr12 85256051 85256372 -36001158 + ORR1E LTR MaLR 2 353 -6 6 1235 21 36 0 0 chr12 85256381 85256409 -36001121 + AT_rich Low_complexity Low_complexity 1 28 0 6 1235 1047 200 28 9 chr12 85256411 85256623 -36000907 + B3 SINE B2 1 216 0 6 1235 286 285 5 102 chr12 85256844 85256956 -36000574 + PB1D7 SINE Alu 8 113 -7 6 1235 339 25 0 0 chr12 85256967 85257007 -36000523 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1235 249 328 0 0 chr12 85257349 85257416 -36000114 + ID4 SINE ID 15 81 -2 6 1235 273 296 37 0 chr12 85257473 85257554 -35999976 + ID SINE ID 2 85 -139 6 1235 420 20 0 0 chr12 85257613 85257662 -35999868 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1235 1473 70 5 0 chr12 85258906 85259091 -35998439 - B2_Mm1a SINE B2 -7 186 1 6 1235 249 159 0 0 chr12 85259167 85259211 -35998319 + (CATA)n Simple_repeat Simple_repeat 3 46 0 6 1235 603 168 83 53 chr12 85259729 85259861 -35997669 + B1_Mur3 SINE Alu 3 138 -11 6 1235 249 33 0 0 chr12 85259861 85259891 -35997639 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1235 445 290 0 0 chr12 85259924 85260031 -35997499 - PB1D7 SINE Alu -12 108 2 6 1235 303 242 43 32 chr12 85260296 85260390 -35997140 - PB1D7 SINE Alu 0 120 26 6 1235 251 256 148 41 chr12 85261166 85261288 -35996242 + MER5A DNA MER1_type 2 136 -53 6 1235 431 237 88 0 chr12 85261401 85261515 -35996015 + B1_Mur2 SINE Alu 19 142 -7 6 1235 324 0 0 0 chr12 85263761 85263797 -35993733 + (TTCTC)n Simple_repeat Simple_repeat 4 39 0 6 1235 218 310 14 0 chr12 85263798 85263869 -35993661 + CT-rich Low_complexity Low_complexity 2 73 0 6 1235 258 169 29 22 chr12 85265741 85265880 -35991650 + T-rich Low_complexity Low_complexity 3 142 0 6 1235 1499 48 16 11 chr12 85266736 85266925 -35990605 - B2_Mm2 SINE B2 -5 190 1 6 1235 271 304 35 35 chr12 85267313 85267429 -35990101 - PB1 SINE Alu 0 127 12 6 1235 205 274 20 0 chr12 85267540 85267591 -35989939 + MIRc SINE MIR 95 146 -122 6 1235 920 330 98 27 chr12 85267596 85268116 -35989414 - MLT1F2 LTR MaLR 0 560 4 6 1235 320 315 67 40 chr12 85269213 85269362 -35988168 + RSINE1 SINE B4 13 165 0 6 1235 1006 116 189 0 chr12 85269397 85269587 -35987943 - URR1A DNA MER1_type 0 226 1 6 1235 223 161 18 18 chr12 85269668 85269725 -35987805 + CT-rich Low_complexity Low_complexity 1 57 0 6 1235 651 263 109 10 chr12 85269927 85270119 -35987411 + ID_B1 SINE B4 1 211 -13 6 1235 244 280 25 62 chr12 85270794 85270874 -35986656 - B4A SINE B4 0 292 216 6 1235 8021 72 0 6 chr12 85270889 85272484 -35985046 + L1_Mus1 LINE L1 4982 6567 0 6 1235 649 261 65 30 chr12 85272495 85272696 -35984834 - B3 SINE B2 -8 208 1 7 1235 812 239 60 30 chr12 85272696 85272915 -35984615 - B4A SINE B4 -61 231 6 6 1235 237 276 111 28 chr12 85273317 85273425 -35984105 + L2b LINE L2 3259 3375 0 7 1235 1209 73 6 11 chr12 85274037 85274217 -35983313 + (TC)n Simple_repeat Simple_repeat 2 180 0 7 1235 612 194 0 0 chr12 85274234 85274363 -35983167 + GA-rich Low_complexity Low_complexity 1 129 0 7 1235 310 237 86 76 chr12 85275077 85275182 -35982348 + B4A SINE B4 186 291 -1 7 1235 243 0 0 0 chr12 85275273 85275300 -35982230 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 1235 390 42 0 0 chr12 85275300 85275347 -35982183 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1235 305 218 0 103 chr12 85275562 85275659 -35981871 + PB1 SINE Alu 38 124 -3 7 1235 668 142 68 41 chr12 85275677 85275824 -35981706 + B2_Mm2 SINE B2 45 195 0 7 1235 225 0 0 0 chr12 85276480 85276505 -35981025 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 7 1235 1472 78 5 0 chr12 85277165 85277357 -35980173 + B2_Mm1a SINE B2 1 193 0 7 1235 1332 90 21 21 chr12 85277366 85277559 -35979971 + B2_Mm2 SINE B2 2 194 -1 7 1235 449 295 35 28 chr12 85277582 85277725 -35979805 + RSINE1 SINE B4 22 165 0 7 1235 21 0 0 0 chr12 85277787 85277808 -35979722 + AT_rich Low_complexity Low_complexity 1 21 0 7 1235 967 233 30 5 chr12 85277875 85278078 -35979452 + B3 SINE B2 2 209 -7 7 1235 27 29 0 0 chr12 85278085 85278119 -35979411 + AT_rich Low_complexity Low_complexity 1 34 0 7 1235 1544 63 16 0 chr12 85278184 85278375 -35979155 - B2_Mm2 SINE B2 -1 194 1 7 1235 646 201 0 89 chr12 85278894 85279052 -35978478 + B1_Mur1 SINE Alu 5 148 -1 7 1235 213 209 0 0 chr12 85279132 85279175 -35978355 + CT-rich Low_complexity Low_complexity 2 44 0 7 1235 407 90 4 38 chr12 85279201 85279307 -35978223 - B2_Mm2 SINE B2 -9 186 47 7 1235 1400 62 28 0 chr12 85279363 85279539 -35977991 - B2_Mm2 SINE B2 -13 182 2 7 1235 364 263 105 0 chr12 85279581 85279676 -35977854 + PB1D10 SINE Alu 1 105 -12 7 1235 351 0 0 0 chr12 85279677 85279716 -35977814 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1235 513 47 0 0 chr12 85280081 85280145 -35977385 + (TCCC)n Simple_repeat Simple_repeat 2 65 0 7 1235 183 342 48 39 chr12 85280251 85280402 -35977128 - MIR SINE MIR -92 170 17 7 1235 285 75 0 0 chr12 85280705 85280745 -35976785 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 7 1235 183 42 0 0 chr12 85280861 85280885 -35976645 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 7 1235 473 285 45 32 chr12 85281281 85281437 -35976093 + MER102b DNA MER1_type 2 159 -182 7 1235 361 266 13 0 chr12 85281448 85281527 -35976003 - ID SINE ID -144 80 1 7 1235 1016 205 8 127 chr12 85281537 85281789 -35975741 - ID_B1 SINE B4 0 224 3 7 1235 2048 107 27 3 chr12 85281817 85282116 -35975414 - ORR1B1 LTR MaLR 0 394 89 7 1235 711 172 16 0 chr12 85282198 85282326 -35975204 + B1_Mus1 SINE Alu 10 139 -9 7 1235 777 227 14 7 chr12 85282355 85282497 -35975033 + RSINE1 SINE B4 2 144 -21 7 1235 279 0 0 0 chr12 85282521 85282552 -35974978 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1235 778 109 7 7 chr12 85284091 85284229 -35973301 + (TTCC)n Simple_repeat Simple_repeat 1 138 0 7 1235 343 197 2 9 chr12 85284235 85284310 -35973220 - PB1D9 SINE Alu -5 115 44 7 1235 935 145 82 27 chr12 85284510 85284694 -35972836 - B2_Mm2 SINE B2 -1 194 1 7 1235 188 0 74 0 chr12 85284826 85284853 -35972677 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 7 1235 1151 55 14 0 chr12 85284934 85285079 -35972451 + B1_Mus2 SINE Alu 1 147 0 7 1235 209 57 29 0 chr12 85285079 85285114 -35972416 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 7 1235 411 21 0 0 chr12 85285126 85285174 -35972356 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1235 351 238 104 37 chr12 85285402 85285537 -35971993 + B4A SINE B4 77 220 -72 7 1235 729 215 23 0 chr12 85285558 85285688 -35971842 + B1_Mur1 SINE Alu 4 136 -13 7 1235 711 0 0 0 chr12 85285691 85285770 -35971760 + (GA)n Simple_repeat Simple_repeat 1 79 0 7 1235 738 238 28 0 chr12 85285872 85286015 -35971515 + B1F1 SINE Alu 1 147 -2 7 1235 590 183 183 0 chr12 85286025 85286145 -35971385 + B1_Mur3 SINE Alu 6 147 -2 7 1235 373 217 29 0 chr12 85286738 85286807 -35970723 + RSINE1 SINE B4 66 136 -29 7 1235 477 191 22 0 chr12 85286812 85286901 -35970629 + MTC LTR MaLR 5 95 -326 7 1235 903 162 14 0 chr12 85286902 85287050 -35970480 + B1_Mur4 SINE Alu 1 150 0 7 1235 206 30 91 0 chr12 85287050 85287083 -35970447 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 7 1235 1159 88 0 0 chr12 85287099 85287246 -35970284 - B1_Mus1 SINE Alu 0 148 2 7 1235 249 57 0 0 chr12 85287309 85287344 -35970186 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1235 469 243 75 0 chr12 85287344 85287451 -35970079 - PB1 SINE Alu 0 127 13 7 1235 821 234 23 1 chr12 85287497 85287696 -35969834 - B3A SINE B2 -5 211 3 7 1235 476 283 61 68 chr12 85287953 85287996 -35969534 + B4 SINE B4 54 167 -125 7 1235 584 192 39 0 chr12 85287996 85288100 -35969430 + B1F SINE Alu 1 108 -41 7 1235 476 283 61 68 chr12 85288100 85288116 -35969414 + B4 SINE B4 168 215 -77 7 1235 1026 210 164 0 chr12 85288685 85288923 -35968607 + B4A SINE B4 2 278 -14 7 1235 288 0 0 0 chr12 85288936 85288968 -35968562 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1235 750 241 94 55 chr12 85288984 85289186 -35968344 + B3 SINE B2 1 210 -6 7 1235 21 0 0 0 chr12 85289198 85289219 -35968311 + AT_rich Low_complexity Low_complexity 1 21 0 7 1235 207 0 0 0 chr12 85289326 85289349 -35968181 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1235 1325 14 0 0 chr12 85289349 85289496 -35968034 - B1_Mus2 SINE Alu 0 147 1 7 1235 1116 250 71 66 chr12 85289607 85289936 -35967594 - MTE2b LTR MaLR -13 366 35 7 1235 1896 202 73 63 chr12 85289936 85290459 -35967071 + RLTR12B LTR ERVK 1 528 0 7 1235 1116 250 71 66 chr12 85290459 85290493 -35967037 - MTE2b LTR MaLR -345 34 1 7 1235 480 18 0 0 chr12 85290602 85290659 -35966871 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1235 257 271 0 28 chr12 85290687 85290759 -35966771 + B3A SINE B2 1 70 -128 7 1235 646 245 13 39 chr12 85291242 85291395 -35966135 + B1_Mur2 SINE Alu 1 149 0 7 1235 1033 45 97 0 chr12 85294002 85294136 -35963394 + B1_Mm SINE Alu 1 147 0 7 1235 225 0 0 0 chr12 85294954 85294979 -35962551 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1235 1099 75 7 14 chr12 85295042 85295053 -35962477 - B1_Mus2 SINE Alu 0 147 138 7 1235 272 48 0 23 chr12 85295053 85295096 -35962434 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 7 1235 1099 75 7 14 chr12 85295096 85295232 -35962298 - B1_Mus2 SINE Alu -10 137 1 7 1235 387 310 59 13 chr12 85295746 85295868 -35961662 + PB1D10 SINE Alu 2 128 -21 7 1235 210 118 0 0 chr12 85295933 85295967 -35961563 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1235 412 190 79 10 chr12 85297025 85297126 -35960404 - PB1D7 SINE Alu -9 111 4 7 1235 1004 181 69 5 chr12 85298110 85298299 -35959231 - B3 SINE B2 -14 202 2 7 1235 194 245 41 0 chr12 85299272 85299321 -35958209 + L2a LINE L2 3368 3418 -8 7 1235 1657 32 0 0 chr12 85299518 85299705 -35957825 + B2_Mm1a SINE B2 1 187 -6 7 1235 245 287 184 37 chr12 85299781 85299944 -35957586 - MIRb SINE MIR -73 195 9 7 1235 299 258 16 0 chr12 85299996 85300058 -35957472 + MER81 DNA AcHobo 7 69 -45 7 1235 225 316 58 16 chr12 85300159 85300274 -35957256 + L2a LINE L2 3060 3185 -241 7 1235 263 111 0 100 chr12 85301132 85301192 -35956338 - B3 SINE B2 -2 214 161 7 1235 2479 52 6 242 chr12 85301435 85301940 -35955590 - RLTR10 LTR ERVK -4 386 1 7 1235 8589 16 0 2 chr12 85301942 85302939 -35954591 - RLTR10-int LTR ERVK -3 1984 990 7 1235 352 271 31 8 chr12 85303021 85303151 -35954379 - RLTR10-int LTR ERVK -5987 1594 1462 7 1235 7761 33 6 8 chr12 85303215 85304175 -35953355 - RLTR10-int LTR ERVK -989 998 41 7 1235 824 185 12 12 chr12 85304191 85304361 -35953169 - RLTR10 LTR ERVK -4 386 217 7 1235 2353 43 10 16 chr12 85304405 85304714 -35952816 - RLTR10 LTR ERVK -83 307 1 7 1235 260 333 0 12 chr12 85305912 85305994 -35951536 - B3A SINE B2 -117 81 1 7 1235 211 224 13 13 chr12 85306121 85306198 -35951332 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 1235 277 193 0 75 chr12 85306424 85306796 -35950734 + (CTGGGG)n Simple_repeat Simple_repeat 1 343 0 7 1235 274 342 44 0 chr12 85307411 85307525 -35950005 - Charlie10 DNA MER1_type -2673 149 31 7 1235 234 0 0 0 chr12 85307568 85307594 -35949936 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1235 1199 37 0 0 chr12 85307598 85307734 -35949796 - B1_Mus2 SINE Alu -7 140 5 7 1235 24 32 0 0 chr12 85308844 85308875 -35948655 + AT_rich Low_complexity Low_complexity 1 31 0 7 1235 476 195 0 0 chr12 85308875 85308957 -35948573 - ID_B1 SINE B4 0 224 143 7 1235 961 106 7 7 chr12 85309062 85309204 -35948326 - B1_Mur4 SINE Alu 0 150 9 7 1235 234 267 25 51 chr12 85309176 85309255 -35948275 - ID_B1 SINE B4 -36 188 112 7 1235 1187 83 6 1 chr12 85309279 85309436 -35948094 + B2_Mm2 SINE B2 1 158 -35 7 1235 204 40 0 0 chr12 85309436 85309461 -35948069 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 7 1235 1179 87 9 139 chr12 85309461 85309518 -35948012 + B2_Mm1t SINE B2 159 187 -6 7 1235 231 133 0 0 chr12 85309537 85309582 -35947948 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1235 1233 55 0 0 chr12 85309588 85309734 -35947796 - B1_Mus2 SINE Alu 0 147 2 7 1235 222 37 0 0 chr12 85310370 85310397 -35947133 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 7 1235 266 261 207 7 chr12 85311205 85311340 -35946190 + LTR87 LTR ERVL? 1 162 -462 8 1235 762 220 181 0 chr12 85311362 85311544 -35945986 - B3 SINE B2 0 216 2 8 1235 507 305 75 9 chr12 85311598 85311810 -35945720 + LTR87 LTR ERVL? 291 516 -108 8 1235 242 281 0 0 chr12 85311823 85311880 -35945650 + tRNA-Ala-GCY_ tRNA tRNA 11 67 -8 8 1235 229 326 0 82 chr12 85311880 85311915 -35945615 + BC1_Mm scRNA scRNA 17 100 -52 8 1235 297 211 35 0 chr12 85311923 85311980 -35945550 + LTR87 LTR ERVL? 566 624 0 8 1235 235 258 152 20 chr12 85312036 85312135 -35945395 - PB1D10 SINE Alu -1 116 5 8 1235 1171 73 104 0 chr12 85312401 85312565 -35944965 + B2_Mm2 SINE B2 1 181 -14 8 1235 388 110 0 12 chr12 85312578 85312685 -35944845 + B2_Mm2 SINE B2 47 188 -7 8 1235 1364 71 49 5 chr12 85313764 85313949 -35943581 - B2_Mm1a SINE B2 0 193 1 8 1235 367 244 51 0 chr12 85313957 85314035 -35943495 - ID4_ SINE ID 0 83 2 8 1235 949 205 45 30 chr12 85314040 85314241 -35943289 - B3 SINE B2 -11 205 2 8 1235 183 80 0 0 chr12 85314254 85314279 -35943251 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 8 1235 248 239 132 15 chr12 85314465 85314533 -35942997 + MIR3 SINE MIR 112 187 -21 8 1235 263 299 59 93 chr12 85314990 85315108 -35942422 + PB1D10 SINE Alu 3 116 -1 8 1235 217 250 13 93 chr12 85316191 85316245 -35941285 - ID4 SINE ID -13 70 19 8 1235 2124 144 19 130 chr12 85316245 85316677 -35940853 + ORR1C2 LTR MaLR 1 384 0 8 1235 217 250 13 93 chr12 85316677 85316697 -35940833 - ID4 SINE ID -65 18 2 8 1235 249 33 0 0 chr12 85316830 85316860 -35940670 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1235 657 289 38 156 chr12 85316863 85317178 -35940352 + B4A SINE B4 8 285 -7 8 1235 403 259 0 23 chr12 85317743 85317830 -35939700 - PB1D10 SINE Alu -28 89 5 8 1235 893 131 27 20 chr12 85318072 85318220 -35939310 + B1_Mur4 SINE Alu 1 149 -1 8 1235 198 143 0 0 chr12 85318220 85318255 -35939275 + (GGAAA)n Simple_repeat Simple_repeat 1 35 0 8 1235 244 325 83 12 chr12 85318481 85318565 -35938965 - MIRb SINE MIR -148 120 31 8 1235 180 0 114 0 chr12 85318570 85318605 -35938925 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1235 519 235 33 16 chr12 85319410 85319531 -35937999 - B1F2 SINE Alu -22 127 5 8 1235 648 304 44 5 chr12 85320094 85320299 -35937231 + MER20 DNA MER1_type 4 216 -3 8 1235 669 25 0 0 chr12 85321489 85321568 -35935962 + (GA)n Simple_repeat Simple_repeat 1 79 0 8 1235 22 0 0 0 chr12 85322098 85322120 -35935410 + AT_rich Low_complexity Low_complexity 1 22 0 8 1235 820 68 246 0 chr12 85322120 85322238 -35935292 - B1_Mm SINE Alu 0 147 1 8 1235 22 70 0 0 chr12 85322900 85322943 -35934587 + AT_rich Low_complexity Low_complexity 1 43 0 8 1235 486 0 0 0 chr12 85323660 85323714 -35933816 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1235 1494 236 67 9 chr12 85323852 85324198 -35933332 - ORR1D1 LTR MaLR -6 368 3 8 1235 1753 248 35 92 chr12 85324605 85324746 -35932784 + RMER5 LTR ERV1 1 110 -424 8 1235 837 159 15 29 chr12 85324746 85324882 -35932648 + B1_Mur4 SINE Alu 4 137 -13 8 1235 249 57 0 0 chr12 85324886 85324921 -35932609 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1235 1753 248 35 92 chr12 85324921 85325320 -35932210 + RMER5 LTR ERV1 111 515 -19 8 1235 216 158 0 0 chr12 85325356 85325394 -35932136 + CT-rich Low_complexity Low_complexity 2 39 0 8 1235 327 233 167 91 chr12 85325398 85325530 -35932000 - B4A SINE B4 -48 244 103 8 1235 585 61 221 100 chr12 85325414 85325541 -35931989 - B1_Mus1 SINE Alu 0 148 7 8 1235 594 63 0 0 chr12 85326625 85326704 -35930826 + (TTC)n Simple_repeat Simple_repeat 3 81 0 8 1235 991 65 0 0 chr12 85326706 85326829 -35930701 - B1_Mus1 SINE Alu -6 142 20 8 1235 562 257 81 0 chr12 85326831 85326967 -35930563 - B1F1 SINE Alu -2 147 1 8 1235 186 43 0 0 chr12 85327127 85327150 -35930380 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1235 357 194 192 3 chr12 85327562 85327679 -35929851 - MTD LTR MaLR -14 405 281 8 1235 306 0 0 0 chr12 85327716 85327750 -35929780 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 154 493 281 16 0 chr12 85327762 85327883 -35929647 - B3 SINE B2 -93 123 1 8 1236 539 224 140 28 chr12 85327894 85328073 -35929457 - MTD LTR MaLR -213 206 8 8 1236 630 35 34 23 chr12 85329495 85329583 -35927947 - B1_Mus2 SINE Alu 0 147 59 8 1236 231 36 0 0 chr12 85329632 85329660 -35927870 + (GACTG)n Simple_repeat Simple_repeat 4 31 0 8 1236 631 260 61 28 chr12 85330025 85330239 -35927291 + ID_B1 SINE B4 2 222 -2 8 1236 1343 87 27 16 chr12 85330446 85330633 -35926897 - B2_Mm2 SINE B2 -5 190 2 8 1236 370 314 31 0 chr12 85330777 85330936 -35926594 - L1MD LINE L1 -486 5756 5593 8 1236 411 113 0 0 chr12 85331083 85331145 -35926385 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1236 214 273 23 0 chr12 85331157 85331201 -35926329 - ID SINE ID -156 68 24 8 1236 557 245 29 104 chr12 85332270 85332443 -35925087 - RSINE1 SINE B4 -2 163 4 8 1236 222 300 142 80 chr12 85333031 85333270 -35924260 - L2 LINE L2 -1879 1540 1287 8 1236 330 132 0 0 chr12 85334143 85334196 -35923334 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1236 648 118 235 0 chr12 85334196 85334315 -35923215 - B1_Mus2 SINE Alu 0 147 1 8 1236 638 193 6 80 chr12 85334472 85334630 -35922900 + RSINE1 SINE B4 3 149 -16 8 1236 468 51 0 0 chr12 85334630 85334689 -35922841 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1236 198 0 0 0 chr12 85334719 85334741 -35922789 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1236 801 220 82 0 chr12 85335359 85335541 -35921989 - B3A SINE B2 -1 197 1 8 1236 749 214 7 7 chr12 85335575 85335721 -35921809 + RSINE1 SINE B4 3 148 -17 8 1236 1220 41 0 33 chr12 85335768 85335905 -35921625 + B1_Mus2 SINE Alu 2 138 -9 8 1236 501 17 0 0 chr12 85335905 85335963 -35921567 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 8 1236 1220 41 0 33 chr12 85335963 85335976 -35921554 + B1_Mus2 SINE Alu 139 147 0 8 1236 599 213 124 77 chr12 85336064 85336219 -35921311 + MTD LTR MaLR 172 342 -77 8 1236 3024 46 44 0 chr12 85336219 85336586 -35920944 - IAPEY_LTR LTR ERVK -2 383 1 8 1236 599 213 124 77 chr12 85336586 85336664 -35920866 + MTD LTR MaLR 343 416 -3 8 1236 1109 183 44 5 chr12 85336806 85337009 -35920521 - B3 SINE B2 -4 212 2 8 1236 2332 130 20 51 chr12 85337065 85337455 -35920075 + ORR1C1 LTR MaLR 1 378 0 8 1236 198 0 0 0 chr12 85337522 85337544 -35919986 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1236 343 229 209 5 chr12 85337897 85338044 -35919486 + L1MA6 LINE L1 6134 6297 -6 8 1236 856 166 14 14 chr12 85338054 85338201 -35919329 + B1_Mur3 SINE Alu 3 149 0 8 1236 207 188 0 0 chr12 85338553 85338601 -35918929 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1236 1580 48 16 0 chr12 85338807 85338995 -35918535 - B2_Mm1t SINE B2 -2 191 1 8 1236 195 69 0 0 chr12 85339505 85339534 -35917996 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1236 360 0 0 0 chr12 85340933 85340973 -35916557 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1236 880 155 14 7 chr12 85340973 85341116 -35916414 - B2_Mm2 SINE B2 -50 145 2 8 1236 940 267 101 52 chr12 85341368 85341676 -35915854 + ORR1E LTR MaLR 1 323 -36 8 1236 456 279 26 57 chr12 85341754 85341982 -35915548 - RLTR15 LTR ERVK -91 268 48 8 1236 313 289 62 0 chr12 85342171 85342341 -35915189 + L1M2 LINE L1 2264 2447 -3696 8 1236 350 338 75 25 chr12 85342344 85342626 -35914904 - Lx8 LINE L1 -4 7469 7174 8 1236 2408 149 28 40 chr12 85342628 85342690 -35914840 + MTC LTR MaLR 1 62 -359 8 1236 1838 209 101 167 chr12 85342690 85343344 -35914186 + RMER19C LTR ERVK 1 611 0 8 1236 2408 149 28 40 chr12 85343344 85343707 -35913823 + MTC LTR MaLR 63 421 0 8 1236 3455 244 53 31 chr12 85343707 85343976 -35913554 - Lx8 LINE L1 -297 7176 6893 8 1236 3321 35 15 15 chr12 85343976 85344387 -35913143 - IAPLTR2a LTR ERVK 0 411 1 8 1236 3455 244 53 31 chr12 85344387 85345016 -35912514 - Lx8 LINE L1 -581 6892 6258 8 1236 216 191 21 0 chr12 85345080 85345127 -35912403 + GA-rich Low_complexity Low_complexity 3 50 0 8 1236 889 324 68 65 chr12 85345128 85345235 -35912295 + L1M2 LINE L1 3682 3785 -2358 8 1236 782 177 43 0 chr12 85345235 85345376 -35912154 + B1_Mus1 SINE Alu 2 148 0 8 1236 889 324 68 65 chr12 85345376 85345902 -35911628 + L1M2 LINE L1 3786 4317 -1826 8 1236 234 354 41 10 chr12 85345903 85346000 -35911530 - PB1D10 SINE Alu -16 101 2 8 1236 517 258 72 57 chr12 85346048 85346296 -35911234 + L1M2 LINE L1 4364 4620 -1523 8 1236 1251 41 0 0 chr12 85346698 85346845 -35910685 - B1_Mm SINE Alu 0 147 1 8 1236 180 0 0 0 chr12 85346889 85346909 -35910621 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1236 316 303 94 63 chr12 85347149 85347276 -35910254 + L1M2 LINE L1 4612 4742 -1401 8 1236 1124 187 14 24 chr12 85347280 85347488 -35910042 + B3 SINE B2 1 206 -10 8 1236 280 256 15 100 chr12 85347504 85347634 -35909896 + L1M2 LINE L1 4690 4808 -1335 8 1236 222 385 73 8 chr12 85348036 85348159 -35909371 + ID_B1 SINE B4 73 203 -21 8 1236 3142 50 210 2 chr12 85348938 85349362 -35908168 + RLTR1B LTR ERV1 1 512 0 8 1236 651 46 22 22 chr12 85350986 85351075 -35906455 - B1_Mus2 SINE Alu 0 147 59 8 1236 437 217 114 15 chr12 85351278 85351409 -35906121 + B1_Mus2 SINE Alu 3 146 -1 8 1236 1221 61 0 0 chr12 85351730 85351878 -35905652 + B1_Mus1 SINE Alu 1 148 0 8 1236 491 0 17 0 chr12 85353181 85353240 -35904290 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1236 581 240 58 0 chr12 85353688 85353809 -35903721 - RSINE1 SINE B4 -9 156 29 8 1236 271 297 9 38 chr12 85353715 85353820 -35903710 - B2_Mm2 SINE B2 -78 117 16 8 1236 417 304 136 24 chr12 85353957 85354163 -35903367 - MT2A LTR ERVL -7 526 298 8 1236 244 320 63 90 chr12 85354154 85354343 -35903187 - MLT2B5 LTR ERVL -296 305 122 8 1236 404 254 170 7 chr12 85354277 85354412 -35903118 - MTEa LTR MaLR -218 161 5 8 1236 673 292 81 53 chr12 85354493 85354924 -35902606 - L1ME1 LINE L1 -252 5927 5485 8 1236 600 27 0 0 chr12 85355247 85355321 -35902209 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 8 1236 1059 252 52 96 chr12 85356093 85356479 -35901051 - MTE2a LTR MaLR 0 379 11 8 1236 2346 147 68 2 chr12 85356631 85357026 -35900504 - MTC LTR MaLR 0 421 1 9 1236 222 300 142 80 chr12 85357309 85357548 -35899982 - L2 LINE L2 -1879 1540 1287 9 1236 229 323 0 0 chr12 85358473 85358538 -35898992 + ID4_ SINE ID 2 66 -17 9 1236 789 176 6 11 chr12 85358764 85358942 -35898588 + CT-rich Low_complexity Low_complexity 4 180 0 9 1236 1430 249 43 36 chr12 85359463 85359855 -35897675 - MTD LTR MaLR -1 418 24 9 1236 308 340 10 29 chr12 85359973 85360076 -35897454 - PB1D10 SINE Alu -7 110 10 9 1236 309 293 0 20 chr12 85360416 85360517 -35897013 - MER31-int LTR ERV1 -403 4533 4435 9 1236 240 217 0 0 chr12 85360679 85360725 -35896805 - B1F SINE Alu -86 63 18 9 1236 288 0 0 0 chr12 85360913 85360945 -35896585 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 9 1236 25 0 0 0 chr12 85361969 85361994 -35895536 + AT_rich Low_complexity Low_complexity 1 25 0 9 1236 1589 57 0 10 chr12 85361996 85362191 -35895339 - B2_Mm1t SINE B2 0 193 1 9 1236 238 248 10 19 chr12 85362600 85362616 -35894914 + ORR1B1-int LTR MaLR 632 646 -863 9 1236 836 117 76 49 chr12 85362616 85362707 -35894823 + B1_Mus1 SINE Alu 1 91 -57 9 1236 2582 51 164 0 chr12 85362707 85363060 -35894470 + IAPLTR2a LTR ERVK 1 411 0 9 1236 836 117 76 49 chr12 85363060 85363112 -35894418 + B1_Mus1 SINE Alu 92 148 0 9 1236 1484 43 37 11 chr12 85363197 85363385 -35894145 - B2_Mm1a SINE B2 0 193 1 9 1236 408 281 43 0 chr12 85363447 85363604 -35893926 - L1MC LINE L1 -358 5820 5657 9 1236 862 99 92 0 chr12 85363631 85363762 -35893768 - B1_Mur3 SINE Alu 0 149 7 9 1236 578 241 150 17 chr12 85363637 85363810 -35893720 - ID_B1 SINE B4 -6 218 23 9 1236 240 295 107 15 chr12 85363820 85363951 -35893579 - L1MC LINE L1 -552 5627 5485 9 1236 1358 232 63 82 chr12 85364095 85364584 -35892946 + RLTR28B LTR ERVL 1 480 -1 9 1236 689 117 18 0 chr12 85364989 85365100 -35892430 + B1_Mus2 SINE Alu 27 139 -8 9 1236 231 167 0 0 chr12 85365103 85365145 -35892385 + (ATG)n Simple_repeat Simple_repeat 3 44 0 9 1236 351 259 82 49 chr12 85365276 85365494 -35892036 - B4A SINE B4 -12 280 6 9 1236 1646 47 0 0 chr12 85365552 85365744 -35891786 - B2_Mm1t SINE B2 0 193 2 9 1236 713 330 68 25 chr12 85366221 85366534 -35890996 - ORR1E LTR MaLR 0 359 33 9 1236 1820 43 13 0 chr12 85366534 85366767 -35890763 + RLTR10A LTR ERVK 1 236 -175 9 1236 1737 214 24 34 chr12 85366966 85367348 -35890182 + MT2A LTR ERVL 18 395 -138 9 1236 246 32 0 0 chr12 85367366 85367397 -35890133 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1236 503 321 46 56 chr12 85367459 85367743 -35889787 + MLT1G1 LTR MaLR 297 577 -2 9 1236 497 311 72 62 chr12 85367909 85368106 -35889424 - MLT1G3 LTR MaLR -335 260 63 9 1236 362 350 172 39 chr12 85368168 85368424 -35889106 - MLT1G3-int LTR MaLR -26 1383 1094 9 1236 307 308 45 71 chr12 85369192 85369266 -35888264 + MTE2b LTR MaLR 7 84 -295 9 1236 2728 109 20 20 chr12 85369266 85369669 -35887861 - RLTR9D LTR ERVK 0 403 1 9 1236 307 308 45 71 chr12 85369669 85369706 -35887824 + MTE2b LTR MaLR 85 115 -264 9 1236 271 79 0 26 chr12 85369706 85369745 -35887785 - ETnERV2-int LTR ERVK -38 7368 7331 9 1236 2924 178 13 34 chr12 85369956 85370659 -35886871 - ETnERV2-int LTR ERVK -1166 6240 5781 9 1236 2701 147 0 0 chr12 85370665 85371045 -35886485 - ETnERV2-int LTR ERVK -2487 4919 4540 9 1236 1578 121 164 0 chr12 85371046 85371327 -35886203 + IAPEY3_LTR LTR ERVK 1 327 -5 9 1236 263 284 144 64 chr12 85371487 85371660 -35885870 - RMER2 LTR ERV1 -26 541 355 9 1236 225 143 0 0 chr12 85372482 85372517 -35885013 - ORR1D2 LTR MaLR 0 370 336 9 1236 1191 68 0 0 chr12 85372802 85372949 -35884581 + B1_Mus2 SINE Alu 1 147 0 9 1236 234 233 68 0 chr12 85373094 85373167 -35884363 - ID2 SINE ID -4 79 2 9 1236 354 250 105 47 chr12 85373445 85373617 -35883913 - RLTR15 LTR ERVK -17 342 161 9 1236 313 263 88 82 chr12 85373673 85373843 -35883687 - RLTR15 LTR ERVK -188 171 1 9 1236 1042 191 14 19 chr12 85374171 85374379 -35883151 - B3 SINE B2 -8 208 2 9 1236 466 281 89 122 chr12 85374381 85374750 -35882780 + ORR1E LTR MaLR 1 357 -2 9 1236 221 75 100 0 chr12 85374780 85374820 -35882710 + ID4 SINE ID 1 44 -39 9 1236 192 200 0 0 chr12 85375177 85375222 -35882308 + T-rich Low_complexity Low_complexity 1 45 0 9 1236 380 86 0 17 chr12 85375467 85375526 -35882004 + B1_Mm SINE Alu 90 147 0 9 1236 348 24 0 0 chr12 85375542 85375583 -35881947 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 1236 5381 16 21 2 chr12 85377033 85377644 -35879886 + L1Md_F3 LINE L1 5960 6582 -2 9 1236 418 65 462 11 chr12 85378205 85378298 -35879232 - B2_Mm2 SINE B2 -14 181 47 9 1236 1198 92 12 0 chr12 85378345 85378509 -35879021 - B2_Mm1t SINE B2 -14 179 14 9 1236 832 221 8 118 chr12 85378753 85378999 -35878531 + MT2A LTR ERVL 6 224 -309 9 1236 276 77 0 0 chr12 85380240 85380279 -35877251 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1236 6587 120 16 81 chr12 85380399 85381606 -35875924 - MMETn-int LTR ERVK -3714 1130 3 9 1236 1005 221 58 55 chr12 85381610 85381935 -35875595 - RLTRETN_Mm LTR ERVK 0 403 33 9 1236 477 248 26 32 chr12 85381947 85382080 -35875450 + B3 SINE B2 50 180 -15 9 1236 573 204 111 72 chr12 85382076 85382256 -35875274 - B3A SINE B2 -5 193 7 9 1236 531 255 63 63 chr12 85382421 85382580 -35874950 + RMER30 DNA MER1_type 35 193 -9 9 1236 1104 174 75 0 chr12 85383561 85383762 -35873768 - B3 SINE B2 0 216 1 9 1236 641 179 68 0 chr12 85383834 85383951 -35873579 - RSINE1 SINE B4 -30 135 11 9 1236 407 228 43 0 chr12 85384004 85384096 -35873434 - ID_B1 SINE B4 -37 187 92 9 1236 600 213 57 16 chr12 85385057 85385181 -35872349 - B1_Mur2 SINE Alu 0 149 21 9 1236 380 136 0 0 chr12 85385244 85385303 -35872227 + MTC LTR MaLR 3 61 -360 9 1236 316 162 71 29 chr12 85385723 85385793 -35871737 - HAL1-3A_ME LINE L1 -809 2049 1977 9 1236 396 118 0 0 chr12 85385798 85385866 -35871664 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1236 242 250 71 30 chr12 85385867 85385966 -35871564 - RSINE1 SINE B4 0 165 63 9 1236 339 291 62 100 chr12 85386082 85386263 -35871267 + MER65-int LTR ERV1 1719 1894 -2977 9 1236 852 186 7 0 chr12 85386263 85386403 -35871127 + B1_Mus1 SINE Alu 2 142 -6 9 1236 339 291 62 100 chr12 85386403 85386481 -35871049 + MER65-int LTR ERV1 1895 1968 -2903 9 1236 1328 89 11 0 chr12 85386523 85386702 -35870828 - B2_Mm1t SINE B2 -10 183 3 9 1236 287 233 183 10 chr12 85386753 85386857 -35870673 - RSINE1 SINE B4 -39 126 5 9 1236 895 128 7 0 chr12 85387035 85387176 -35870354 + B1_Mus2 SINE Alu 6 147 0 9 1236 180 97 0 0 chr12 85387180 85387211 -35870319 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1236 1109 123 0 6 chr12 85387303 85387483 -35870047 + (TCC)n Simple_repeat Simple_repeat 2 180 0 9 1236 557 171 28 19 chr12 85387521 85387628 -35869902 - B1_Mur1 SINE Alu -25 124 17 9 1236 501 17 0 0 chr12 85387636 85387694 -35869836 + (CACAC)n Simple_repeat Simple_repeat 2 59 0 9 1236 369 0 0 0 chr12 85387739 85387780 -35869750 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1236 203 147 0 0 chr12 85387870 85387904 -35869626 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 9 1236 326 252 93 58 chr12 85388263 85388383 -35869147 + PB1D7 SINE Alu 24 148 0 9 1236 433 274 0 42 chr12 85388619 85388656 -35868874 - B1F2 SINE Alu -23 126 92 9 1236 4407 156 109 90 chr12 85388656 85389660 -35867870 + RLTR13D2 LTR ERVK 1 1023 0 9 1236 433 274 0 42 chr12 85389660 85389740 -35867790 - B1F2 SINE Alu -58 91 14 9 1236 428 299 58 21 chr12 85389766 85389957 -35867573 + MER65-int LTR ERV1 3618 3815 -1056 9 1236 1644 40 4 18 chr12 85390165 85390392 -35867138 + MTA_Mm LTR MaLR 1 224 -172 9 1236 3589 20 0 0 chr12 85390450 85390846 -35866684 - MTA_Mm LTR MaLR 0 396 1 9 1236 1183 75 0 0 chr12 85390978 85391125 -35866405 - B1_Mus2 SINE Alu 0 147 1 9 1236 382 183 58 47 chr12 85391369 85391455 -35866075 + B1_Mur1 SINE Alu 62 148 -1 9 1236 379 255 35 108 chr12 85391901 85392078 -35865452 + ORR1E LTR MaLR 2 166 -204 9 1236 198 150 0 0 chr12 85393416 85393456 -35864074 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1236 423 244 81 40 chr12 85393864 85393988 -35863542 + ID_B1 SINE B4 91 219 -5 9 1236 1198 106 0 27 chr12 85395793 85395977 -35861553 - B2_Mm2 SINE B2 -14 181 3 9 1236 1059 56 14 20 chr12 85396229 85396375 -35861155 - B1_Mus2 SINE Alu -2 145 1 9 1236 321 184 245 0 chr12 85396949 85397047 -35860483 + ID_B1 SINE B4 103 224 0 9 1236 364 229 0 119 chr12 85397151 85397173 -35860357 + MT2B LTR ERVL 147 152 -449 9 1236 1029 51 0 0 chr12 85397173 85397311 -35860219 + B1_Mus1 SINE Alu 2 139 -9 9 1236 195 42 0 0 chr12 85397830 85397854 -35859676 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 9 1236 193 254 45 0 chr12 85398401 85398468 -35859062 + MIR SINE MIR 159 228 -34 9 1236 652 236 73 52 chr12 85400304 85400496 -35857034 + B3A SINE B2 1 196 -2 9 1236 519 141 5 258 chr12 85400518 85400712 -35856818 + B1_Mur4 SINE Alu 3 149 -1 9 1236 1383 57 0 0 chr12 85401377 85401554 -35855976 + (TTC)n Simple_repeat Simple_repeat 3 179 0 9 1236 633 27 0 0 chr12 85401554 85401629 -35855901 + (TCC)n Simple_repeat Simple_repeat 3 77 0 9 1236 1184 55 0 0 chr12 85401631 85401776 -35855754 - B1_Mm SINE Alu -1 146 2 9 1236 657 219 29 7 chr12 85401814 85401952 -35855578 - B1F1 SINE Alu -3 146 6 9 1236 257 297 0 0 chr12 85401896 85401960 -35855570 - B4A SINE B4 -146 146 83 9 1236 377 75 0 15 chr12 85402172 85402234 -35855296 - B2_Mm1a SINE B2 0 193 132 9 1236 207 0 0 0 chr12 85402234 85402257 -35855273 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 9 1236 536 227 34 0 chr12 85402259 85402378 -35855152 - B1_Mur1 SINE Alu -15 134 12 9 1236 1491 73 11 0 chr12 85402400 85402591 -35854939 - B2_Mm2 SINE B2 -2 193 1 9 1236 427 195 11 11 chr12 85402651 85402739 -35854791 + B3 SINE B2 1 88 -128 1 1236 556 106 10 60 chr12 85402731 85402831 -35854699 + B1F2 SINE Alu 55 149 0 1 1236 882 229 59 96 chr12 85404045 85404248 -35853282 + MER65-int LTR ERV1 1643 1833 -3038 1 1236 1130 182 19 5 chr12 85404248 85404458 -35853072 + B3 SINE B2 2 214 -2 1 1236 882 229 59 96 chr12 85404458 85404693 -35852837 + MER65-int LTR ERV1 1834 2065 -2806 1 1236 510 55 0 0 chr12 85405120 85405193 -35852337 + B2_Mm2 SINE B2 1 73 -122 1 1236 633 152 86 23 chr12 85405165 85405293 -35852237 - B3 SINE B2 -80 136 1 1 1236 432 130 0 0 chr12 85405296 85405365 -35852165 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1236 294 289 18 81 chr12 85405844 85405912 -35851618 - RMER17B LTR ERVK -253 556 497 1 1236 185 0 40 0 chr12 85405912 85405937 -35851593 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1236 651 80 33 105 chr12 85405937 85406090 -35851440 - RMER17B LTR ERVK -505 453 312 1 1236 243 0 0 0 chr12 85406157 85406184 -35851346 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1236 285 167 81 32 chr12 85406224 85406286 -35851244 - B4A SINE B4 -77 215 151 1 1236 3587 45 5 13 chr12 85406356 85406803 -35850727 + L1Md_F3 LINE L1 6142 6584 0 1 1236 237 33 0 0 chr12 85407421 85407451 -35850079 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1236 1195 62 0 0 chr12 85407451 85407597 -35849933 - B1_Mm SINE Alu -1 146 1 1 1236 325 169 55 16 chr12 85407718 85407831 -35849699 + RLTR13D3 LTR ERVK 987 1053 -61 1 1236 294 135 405 0 chr12 85408127 85408201 -35849329 + RLTR14-int LTR ERV1 447 550 -4767 1 1236 306 0 0 0 chr12 85408313 85408347 -35849183 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1236 567 112 0 0 chr12 85408347 85408454 -35849076 + (GA)n Simple_repeat Simple_repeat 2 108 0 1 1236 278 253 12 24 chr12 85408490 85408575 -35848955 + RLTR14-int LTR ERV1 825 908 -4409 1 1236 604 248 58 100 chr12 85408688 85409047 -35848483 - RLTR15 LTR ERVK -15 344 1 1 1236 4360 138 79 4 chr12 85409170 85409929 -35847601 + RMER19B LTR ERVK 1 816 -86 1 1236 285 292 66 0 chr12 85411641 85411747 -35845783 + RMER5 LTR ERV1 49 161 -373 1 1236 627 284 25 0 chr12 85411888 85412050 -35845480 - B3A SINE B2 -31 167 2 1 1236 382 214 143 53 chr12 85412094 85412251 -35845279 - ORR1D1 LTR MaLR 0 374 170 1 1236 511 145 101 108 chr12 85412269 85412408 -35845122 - B1_Mus1 SINE Alu -1 147 10 1 1236 383 224 157 0 chr12 85412623 85412722 -35844808 + B3 SINE B2 1 113 -103 1 1236 833 236 75 0 chr12 85412787 85412986 -35844544 + B3 SINE B2 3 216 0 1 1236 449 134 61 13 chr12 85413495 85413590 -35843940 + B1_Mus2 SINE Alu 1 137 -10 1 1236 441 0 0 0 chr12 85413590 85413639 -35843891 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1236 520 241 92 7 chr12 85413662 85413804 -35843726 + B3 SINE B2 63 216 0 1 1236 576 260 20 7 chr12 85414600 85414747 -35842783 - B3 SINE B2 -10 206 58 1 1236 1933 179 30 30 chr12 85415453 85415857 -35841673 + MTC LTR MaLR 10 413 -8 1 1236 267 294 15 0 chr12 85416989 85417057 -35840473 - ID4_ SINE ID -1 82 14 1 1236 304 206 0 0 chr12 85417108 85417171 -35840359 - Lx7 LINE L1 -16 7680 7618 1 1236 180 97 0 0 chr12 85417182 85417213 -35840317 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1236 1094 269 80 22 chr12 85417251 85417598 -35839932 - Lx7 LINE L1 -334 7362 6994 1 1236 1105 57 11 39 chr12 85417598 85417780 -35839750 + (TTTCC)n Simple_repeat Simple_repeat 4 180 0 1 1236 1094 269 80 22 chr12 85417780 85417797 -35839733 - Lx7 LINE L1 -703 6993 6977 1 1236 503 108 24 0 chr12 85417797 85417880 -35839650 + (TTTC)n Simple_repeat Simple_repeat 2 86 0 1 1236 504 185 126 0 chr12 85417912 85418031 -35839499 - B1_Mur3 SINE Alu -6 143 10 1 1236 966 229 94 20 chr12 85418040 85418294 -35839236 - Lx7 LINE L1 -702 6994 6722 1 1236 803 178 202 22 chr12 85418783 85418961 -35838569 + B3 SINE B2 4 213 -3 1 1236 5015 67 53 32 chr12 85418972 85419457 -35838073 + L1VL2 LINE L1 310 823 -5512 1 1236 1392 66 55 0 chr12 85419457 85419639 -35837891 + B2_Mm1a SINE B2 2 193 0 1 1236 6415 60 31 9 chr12 85419639 85420642 -35836888 + L1VL2 LINE L1 824 1826 -1789 1 1236 317 297 0 0 chr12 85420782 85420873 -35836657 - PB1D10 SINE Alu -2 115 25 1 1236 239 143 113 14 chr12 85421877 85421948 -35835582 + L1M2 LINE L1 2745 2822 -3321 1 1236 436 256 220 11 chr12 85422153 85422335 -35835195 + RMER21B LTR ERV1 348 567 -275 1 1236 420 20 0 0 chr12 85422968 85423017 -35834513 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1 1236 1272 73 78 0 chr12 85423352 85423531 -35833999 + B2_Mm2 SINE B2 1 193 -2 1 1236 1877 153 89 54 chr12 85423646 85424073 -35833457 + RMER10A LTR ERVL 1 442 0 1 1236 23 0 0 0 chr12 85424345 85424368 -35833162 + AT_rich Low_complexity Low_complexity 1 23 0 1 1236 584 156 169 7 chr12 85424484 85424620 -35832910 + URR1B DNA MER1_type 1 158 -67 1 1236 278 209 0 216 chr12 85424666 85424800 -35832730 + MT2B LTR ERVL 153 257 -344 1 1236 591 190 38 90 chr12 85424686 85424819 -35832711 + B1_Mur2 SINE Alu 3 128 -21 1 1236 1048 109 0 20 chr12 85426139 85426289 -35831241 + B1_Mus1 SINE Alu 2 148 0 1 1236 1188 120 11 5 chr12 85426709 85426893 -35830637 - B2_Mm2 SINE B2 -9 186 2 1 1236 356 340 68 31 chr12 85426924 85427146 -35830384 - MER2 DNA MER2_type 0 345 116 1 1236 388 50 34 0 chr12 85427434 85427495 -35830035 - B1_Mm SINE Alu -11 136 37 1 1236 183 42 0 0 chr12 85427500 85427524 -35830006 + (CCCCG)n Simple_repeat Simple_repeat 1 24 0 1 1236 388 50 34 0 chr12 85427524 85427585 -35829945 - B1_Mm SINE Alu -11 136 37 1 1236 544 42 298 3 chr12 85427611 85427719 -35829811 - B1_Mm SINE Alu -11 137 4 1 1236 317 250 15 0 chr12 85427735 85427803 -35829727 + ID4_ SINE ID 14 82 -1 1 1236 625 234 73 15 chr12 85428736 85428940 -35828590 - LTRIS4 LTR ERV1 -18 489 274 1 1236 4513 18 0 0 chr12 85429182 85429675 -35827855 + MT2_Mm LTR ERVL 1 493 0 1 1236 21 36 0 0 chr12 85430654 85430682 -35826848 + AT_rich Low_complexity Low_complexity 1 28 0 1 1236 1749 119 82 3 chr12 85430874 85431177 -35826353 - IAPEY3_LTR LTR ERVK -5 327 1 1 1236 1571 177 28 43 chr12 85431212 85431537 -35825993 - IAPEY3-int LTR ERVK -16 7664 7345 1 1236 37711 90 12 4 chr12 85431565 85435793 -35821737 - IAPEY3-int LTR ERVK -417 7263 3005 1 1236 6657 57 41 0 chr12 85435793 85436614 -35820916 + RLTR13A LTR ERVK 1 855 0 1 1236 37711 90 12 4 chr12 85436614 85437456 -35820074 - IAPEY3-int LTR ERVK -4676 3004 2151 1 1236 369 159 60 24 chr12 85437454 85437538 -35819992 - IAPEY3-int LTR ERVK -7591 89 3 1 1236 1661 143 86 3 chr12 85437544 85437845 -35819685 - IAPEY3_LTR LTR ERVK -6 326 1 1 1236 296 140 88 0 chr12 85437852 85437909 -35819621 + PB1D9 SINE Alu 59 120 0 1 1236 502 220 0 0 chr12 85437924 85438024 -35819506 + B1_Mur2 SINE Alu 47 146 -3 1 1236 201 74 0 0 chr12 85438996 85439023 -35818507 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1236 1004 128 0 20 chr12 85439456 85439607 -35817923 + B1_Mus1 SINE Alu 1 148 0 1 1236 882 130 12 93 chr12 85440088 85440249 -35817281 - B1_Mur4 SINE Alu -1 149 2 1 1236 299 182 18 0 chr12 85440415 85440470 -35817060 - PB1D10 SINE Alu -3 114 59 1 1236 4306 97 42 16 chr12 85440470 85440970 -35816560 - RLTR19B LTR ERVK 0 715 203 1 1236 1247 94 72 0 chr12 85440970 85440989 -35816541 - B2_Mm2 SINE B2 -2 193 164 1 1236 189 0 0 0 chr12 85440989 85441010 -35816520 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1 1236 1247 94 72 0 chr12 85441010 85441170 -35816360 - B2_Mm2 SINE B2 -32 163 2 1 1236 4306 97 42 16 chr12 85441170 85441353 -35816177 - RLTR19B LTR ERVK -513 202 14 1 1236 377 287 17 0 chr12 85441458 85441573 -35815957 + MLT1A1 LTR MaLR 280 396 -12 1 1236 305 232 0 35 chr12 85442806 85442891 -35814639 + MER20 DNA MER1_type 3 84 -135 1 1236 339 227 40 30 chr12 85442885 85442896 -35814634 + MT2B LTR ERVL 152 163 -438 1 1236 600 176 76 0 chr12 85442896 85443015 -35814515 + B1_Mus1 SINE Alu 1 128 -20 1 1236 261 266 43 68 chr12 85443040 85443157 -35814373 + MER20 DNA MER1_type 78 191 -28 1 1236 754 268 104 40 chr12 85443170 85443419 -35814111 + B4A SINE B4 8 272 -20 1 1236 471 18 0 0 chr12 85443420 85443476 -35814054 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1236 268 233 86 42 chr12 85443499 85443662 -35813868 - RLTR13C2 LTR ERVK -58 750 642 1 1236 211 211 0 0 chr12 85443923 85443961 -35813569 - B2_Mm2 SINE B2 -157 38 1 1 1236 1830 162 68 3 chr12 85444846 85445199 -35812331 - ORR1C2 LTR MaLR -8 376 1 1 1236 413 286 55 8 chr12 85445265 85445392 -35812138 + ID_B1 SINE B4 91 223 -1 1 1236 1793 195 66 0 chr12 85445466 85445814 -35811716 + ORR1D1 LTR MaLR 2 372 -2 1 1236 1008 62 69 0 chr12 85445884 85446014 -35811516 - B1_Mus1 SINE Alu -9 139 1 1 1236 724 157 61 54 chr12 85446459 85446607 -35810923 + B1_Mur1 SINE Alu 1 149 0 1 1236 1696 160 32 72 chr12 85446653 85447030 -35810500 + RLTR41 LTR ERV1 59 420 -26 1 1236 251 326 11 0 chr12 85447031 85447120 -35810410 + PB1D10 SINE Alu 16 105 -12 1 1236 918 90 0 0 chr12 85447126 85447260 -35810270 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 1 1236 257 70 0 44 chr12 85447260 85447305 -35810225 + (CAGAGA)n Simple_repeat Simple_repeat 1 43 0 1 1236 1605 182 125 55 chr12 85447969 85448353 -35809177 + MTD LTR MaLR 1 411 -8 1 1236 23 33 0 0 chr12 85448356 85448386 -35809144 + AT_rich Low_complexity Low_complexity 1 30 0 1 1236 549 152 0 64 chr12 85448387 85448528 -35809002 - Lx4A LINE L1 -3 7055 6924 1 1236 1864 120 83 18 chr12 85448612 85448950 -35808580 - ORR1B2 LTR MaLR -7 360 1 1 1236 284 234 94 72 chr12 85449036 85449174 -35808356 + ID_B1 SINE B4 49 189 -35 1 1236 461 154 26 0 chr12 85449097 85449175 -35808355 + B1F2 SINE Alu 33 112 -37 1 1236 2052 121 3 0 chr12 85449239 85449571 -35807959 - RMER6A LTR ERVK 0 756 424 1 1236 415 319 43 7 chr12 85450597 85450736 -35806794 - ID_B1 SINE B4 -31 193 50 1 1236 535 298 60 121 chr12 85450763 85451209 -35806321 + RLTR23 LTR ERV1 12 430 0 1 1236 227 104 21 0 chr12 85451514 85451562 -35805968 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1236 730 201 75 28 chr12 85452324 85452614 -35804916 + RMER17C LTR ERVK 1 341 -69 1 1236 252 224 30 0 chr12 85452622 85452689 -35804841 - MLT1B LTR MaLR -50 340 272 1 1236 7681 56 0 0 chr12 85452745 85453677 -35803853 - L1Md_T LINE L1 0 6582 5651 1 1236 309 208 143 0 chr12 85453711 85453788 -35803742 - MLT1B LTR MaLR -291 99 12 1 1236 423 0 0 0 chr12 85454623 85454670 -35802860 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1236 312 94 52 34 chr12 85454671 85454748 -35802782 + B1_Mur4 SINE Alu 35 149 -1 1 1236 243 0 0 0 chr12 85454769 85454796 -35802734 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1236 234 0 0 0 chr12 85455165 85455191 -35802339 + (G)n Simple_repeat Simple_repeat 1 26 0 1 1236 180 0 0 0 chr12 85455914 85455934 -35801596 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1236 607 236 7 27 chr12 85456255 85456403 -35801127 + ID_B1 SINE B4 18 162 -62 1 1236 326 270 0 48 chr12 85456326 85456431 -35801099 + PB1D10 SINE Alu 7 106 -11 1 1236 241 301 0 98 chr12 85456448 85456540 -35800990 + ID4 SINE ID 1 83 0 1 1236 456 62 0 0 chr12 85456584 85456648 -35800882 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1236 524 224 100 20 chr12 85456841 85456991 -35800539 - B3A SINE B2 -36 162 1 1 1236 322 256 0 68 chr12 85457090 85457178 -35800352 + RSINE1 SINE B4 2 83 -82 1 1236 301 246 52 52 chr12 85457198 85457314 -35800216 - PB1D10 SINE Alu 0 117 2 1 1236 445 71 159 9 chr12 85457317 85457430 -35800100 - B2_Mm2 SINE B2 -3 192 46 1 1236 1159 94 24 0 chr12 85457457 85457627 -35799903 - B2_Mm2 SINE B2 -14 181 8 1 1236 1179 55 7 0 chr12 85457919 85458065 -35799465 + B1_Mus2 SINE Alu 1 147 0 1 1236 398 151 23 0 chr12 85458066 85458152 -35799378 + GA-rich Low_complexity Low_complexity 2 89 0 1 1236 219 36 0 0 chr12 85458201 85458229 -35799301 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1236 1164 49 0 7 chr12 85458229 85458368 -35799162 - B1_Mus1 SINE Alu -5 143 5 1 1236 237 269 0 0 chr12 85458484 85458551 -35798979 - L1M5 LINE L1 -684 5556 5490 1 1237 248 276 23 30 chr12 85459108 85459269 -35798261 + (TATATG)n Simple_repeat Simple_repeat 1 159 0 1 1237 1014 141 0 0 chr12 85459653 85459823 -35797707 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 1 1237 1033 119 0 0 chr12 85459837 85459980 -35797550 - B1_Mur4 SINE Alu -6 144 2 1 1237 207 0 0 0 chr12 85460453 85460476 -35797054 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1237 1106 64 0 54 chr12 85460478 85460627 -35796903 - B1_Mus1 SINE Alu -6 142 2 1 1237 221 53 53 0 chr12 85461079 85461117 -35796413 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 1237 1188 56 0 0 chr12 85461117 85461261 -35796269 - B1_Mus1 SINE Alu -3 145 2 1 1237 287 246 123 0 chr12 85461316 85461454 -35796076 - Kanga1 DNA Tc2 -9 1736 1582 1 1237 261 57 0 0 chr12 85461473 85461508 -35796022 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1237 605 240 31 0 chr12 85461511 85461640 -35795890 - B3A SINE B2 -65 133 1 1 1237 34 42 0 0 chr12 85461682 85461730 -35795800 + AT_rich Low_complexity Low_complexity 1 48 0 1 1237 31 44 0 0 chr12 85461803 85461848 -35795682 + AT_rich Low_complexity Low_complexity 1 45 0 1 1237 372 256 35 127 chr12 85462358 85462555 -35794975 + L1MD2 LINE L1 6080 6258 -101 1 1237 198 0 0 0 chr12 85462575 85462597 -35794933 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1237 737 259 52 110 chr12 85462842 85463059 -35794471 + B4A SINE B4 1 219 -73 1 1237 729 297 9 19 chr12 85463059 85463275 -35794255 + ID_B1 SINE B4 4 217 -7 1 1237 737 259 52 110 chr12 85463275 85463348 -35794182 + B4A SINE B4 220 274 -18 1 1237 213 180 0 0 chr12 85463364 85463414 -35794116 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1237 1382 84 11 0 chr12 85463693 85463883 -35793647 - B2_Mm1t SINE B2 -1 192 1 1 1237 1075 56 0 90 chr12 85463917 85464073 -35793457 - B1_Mus1 SINE Alu -5 143 2 1 1237 445 263 62 11 chr12 85464083 85464260 -35793270 - L1MA5 LINE L1 -6 6294 6109 1 1237 728 48 0 54 chr12 85464294 85464310 -35793220 - B1_Mm SINE Alu 0 147 137 1 1237 359 53 35 0 chr12 85464310 85464367 -35793163 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1237 728 48 0 54 chr12 85464367 85464461 -35793069 - B1_Mm SINE Alu -11 136 43 1 1237 1046 108 6 6 chr12 85464456 85464615 -35792915 - B2_Mm1t SINE B2 -34 159 1 1 1237 723 202 162 30 chr12 85464654 85464889 -35792641 - L1MA5 LINE L1 -203 6097 5832 1 1237 299 235 15 0 chr12 85464966 85465034 -35792496 + B4A SINE B4 1 69 -223 1 1237 245 222 0 0 chr12 85465083 85465137 -35792393 - B1_Mur4 SINE Alu -94 56 3 1 1237 248 254 15 0 chr12 85465829 85465896 -35791634 + PB1D10 SINE Alu 49 116 -1 1 1237 324 283 169 65 chr12 85465914 85466175 -35791355 + B4A SINE B4 5 292 0 1 1237 180 0 0 0 chr12 85466360 85466380 -35791150 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1237 273 307 124 38 chr12 85466498 85466603 -35790927 + PB1D10 SINE Alu 3 116 -1 1 1237 371 291 48 6 chr12 85467537 85467693 -35789837 + MIR SINE MIR 50 220 -48 1 1237 495 0 0 0 chr12 85468221 85468276 -35789254 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1237 743 61 68 0 chr12 85468504 85468652 -35788878 + (TC)n Simple_repeat Simple_repeat 1 158 0 1 1237 361 202 25 12 chr12 85468673 85468753 -35788777 - PB1D9 SINE Alu 0 120 40 1 1237 798 200 14 7 chr12 85469304 85469450 -35788080 + B1_Mus2 SINE Alu 1 147 0 1 1237 233 29 29 0 chr12 85469451 85469485 -35788045 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1237 509 233 105 0 chr12 85469498 85469631 -35787899 - B4 SINE B4 -105 187 41 1 1237 900 177 0 13 chr12 85469970 85470119 -35787411 - B1_Mur2 SINE Alu -1 148 2 1 1237 299 240 56 28 chr12 85470398 85470505 -35787025 + PB1D10 SINE Alu 1 110 -7 1 1237 448 213 0 112 chr12 85470534 85470664 -35786866 + B1F SINE Alu 1 141 -8 1 1237 306 281 12 0 chr12 85470671 85470753 -35786777 + ID4_ SINE ID 1 83 0 1 1237 1136 68 0 52 chr12 85471451 85471590 -35785940 + B1_Mus1 SINE Alu 2 140 -8 1 1237 198 0 0 0 chr12 85471590 85471612 -35785918 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1 1237 1136 68 0 52 chr12 85471612 85471627 -35785903 + B1_Mus1 SINE Alu 141 148 0 1 1237 259 253 48 12 chr12 85472060 85472144 -35785386 - RSINE1 SINE B4 -76 89 3 1 1237 493 244 185 0 chr12 85472600 85472735 -35784795 - RSINE1 SINE B4 0 165 6 1 1237 1078 224 71 0 chr12 85472908 85473176 -35784354 + B4A SINE B4 6 292 0 1 1237 957 211 29 5 chr12 85473274 85473484 -35784046 + B3 SINE B2 1 215 -1 1 1237 1268 161 43 0 chr12 85473896 85474107 -35783423 + URR1B DNA MER1_type 5 224 -1 1 1237 1203 81 91 17 chr12 85474353 85474528 -35783002 + B2_Mm1t SINE B2 1 188 -5 1 1237 948 8 8 8 chr12 85475404 85475528 -35782002 + B1_Mus1 SINE Alu 25 148 0 1 1237 665 126 9 0 chr12 85475528 85475639 -35781891 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 1 1237 637 280 98 39 chr12 85475684 85475918 -35781612 + B4 SINE B4 2 249 -43 1 1237 245 265 71 29 chr12 85476702 85476772 -35780758 + PB1D10 SINE Alu 1 73 -44 1 1237 180 0 0 0 chr12 85476865 85476885 -35780645 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1237 1157 62 0 0 chr12 85476885 85477030 -35780500 - B1_Mus2 SINE Alu -2 145 1 1 1237 316 274 18 105 chr12 85478519 85478633 -35778897 + B4 SINE B4 2 105 -187 1 1237 609 61 0 0 chr12 85478660 85478742 -35778788 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1237 180 0 0 0 chr12 85479037 85479057 -35778473 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1237 909 172 14 0 chr12 85479119 85479264 -35778266 + B1_Mus2 SINE Alu 1 147 0 1 1237 24 0 0 0 chr12 85479278 85479302 -35778228 + AT_rich Low_complexity Low_complexity 1 24 0 1 1237 493 222 38 178 chr12 85480800 85481036 -35776494 + B3 SINE B2 2 204 -12 1 1237 620 167 8 0 chr12 85481441 85481561 -35775969 + CT-rich Low_complexity Low_complexity 1 121 0 1 1237 567 92 11 0 chr12 85481648 85481735 -35775795 + B1_Mur4 SINE Alu 63 150 0 1 1237 1103 77 7 0 chr12 85481746 85481901 -35775629 + (GGAA)n Simple_repeat Simple_repeat 1 156 0 1 1237 429 287 86 0 chr12 85482269 85482443 -35775087 - MER20 DNA MER1_type 0 219 31 1 1237 186 43 0 0 chr12 85483900 85483923 -35773607 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1237 694 172 87 29 chr12 85483923 85484061 -35773469 - B1_Mur4 SINE Alu -3 147 2 1 1237 587 81 12 0 chr12 85484632 85484718 -35772812 + (ACTG)n Simple_repeat Simple_repeat 4 90 0 1 1237 516 148 4 183 chr12 85484718 85484867 -35772663 - B1_Mus1 SINE Alu -14 135 7 1 1237 295 210 49 12 chr12 85485280 85485362 -35772168 + PB1D7 SINE Alu 32 116 -4 1 1237 406 261 56 28 chr12 85485484 85485626 -35771904 + B1F SINE Alu 3 148 -1 1 1237 463 260 16 16 chr12 85485761 85485890 -35771640 + RSINE1 SINE B4 3 131 -34 1 1237 466 274 0 21 chr12 85486072 85486169 -35771361 + RSINE1 SINE B4 71 165 0 1 1237 318 317 19 37 chr12 85486683 85486791 -35770739 + PB1D10 SINE Alu 6 111 -6 1 1237 509 195 203 0 chr12 85486792 85486915 -35770615 + B1F SINE Alu 1 148 -1 1 1237 216 0 0 0 chr12 85486978 85487002 -35770528 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1237 2983 312 20 22 chr12 85487862 85488893 -35768637 - MamGyp-int LTR Gypsy -3943 1119 91 1 1237 360 0 0 0 chr12 85489875 85489915 -35767615 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1237 23 0 0 0 chr12 85490221 85490244 -35767286 + AT_rich Low_complexity Low_complexity 1 23 0 1 1237 192 97 0 0 chr12 85490300 85490331 -35767199 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1237 27 0 0 0 chr12 85492332 85492359 -35765171 + AT_rich Low_complexity Low_complexity 1 27 0 1 1237 505 55 0 0 chr12 85494894 85494967 -35762563 - B1_Mur4 SINE Alu 0 150 78 1 1237 1230 54 0 0 chr12 85494994 85495141 -35762389 - B1_Mus1 SINE Alu 0 148 2 1 1237 1061 112 11 43 chr12 85495159 85495345 -35762185 - B2_Mm2 SINE B2 -14 181 2 1 1237 227 189 19 0 chr12 85495506 85495559 -35761971 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1237 199 250 62 12 chr12 85495621 85495702 -35761828 + MIRc SINE MIR 100 184 -84 1 1237 204 276 0 0 chr12 85495907 85495965 -35761565 + CT-rich Low_complexity Low_complexity 1 58 0 1 1237 728 241 118 30 chr12 85496569 85496832 -35760698 + MER113 DNA MER1_type 166 455 -66 1 1237 871 82 292 0 chr12 85496832 85496964 -35760566 + B2_Mm2 SINE B2 1 170 -25 1 1237 180 0 0 0 chr12 85496964 85496984 -35760546 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1237 871 82 292 0 chr12 85496984 85496998 -35760532 + B2_Mm2 SINE B2 171 189 -6 1 1237 728 241 118 30 chr12 85496998 85497038 -35760492 + MER113 DNA MER1_type 456 496 -25 1 1237 216 352 14 14 chr12 85498074 85498146 -35759384 - ID4 SINE ID -10 73 2 1 1237 328 248 83 110 chr12 85498165 85498310 -35759220 - B1F SINE Alu -8 141 1 1 1237 192 77 0 0 chr12 85499691 85499717 -35757813 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1237 257 319 29 0 chr12 85501600 85501714 -35755816 + MIRm SINE MIR 22 151 -125 1 1237 1155 116 5 16 chr12 85503741 85503933 -35753597 - B2_Mm2 SINE B2 0 195 6 2 1237 1176 55 0 27 chr12 85503943 85504093 -35753437 - B1_Mus2 SINE Alu 0 147 2 3 1237 355 253 25 0 chr12 85504199 85504278 -35753252 - ID4 SINE ID -1 82 2 4 1237 1707 219 35 10 chr12 85504921 85505323 -35752207 + MTD LTR MaLR 3 414 -5 5 1237 312 120 0 0 chr12 85505498 85505548 -35751982 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 6 1237 268 250 31 0 chr12 85505952 85506016 -35751514 + MIR SINE MIR 37 102 -106 7 1237 257 224 72 84 chr12 85506035 85506118 -35751412 - ID SINE ID -138 86 5 8 1237 189 255 43 0 chr12 85506528 85506575 -35750955 + MIRm SINE MIR 105 153 -123 9 1237 316 359 40 33 chr12 85507030 85507180 -35750350 + L1MEg LINE L1 372 522 -5562 1 1237 1096 260 14 34 chr12 85507429 85507724 -35749806 + B4A SINE B4 4 292 0 1 1237 224 54 54 0 chr12 85507824 85507861 -35749669 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1237 1215 187 0 10 chr12 85507869 85508074 -35749456 + B3 SINE B2 1 203 -13 1 1237 192 77 0 0 chr12 85508080 85508106 -35749424 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 1 1237 814 153 41 20 chr12 85508141 85508288 -35749242 + B1_Mur4 SINE Alu 1 150 0 1 1237 552 244 101 43 chr12 85508405 85508659 -35748871 + B4A SINE B4 3 278 -14 1 1237 210 37 0 0 chr12 85508693 85508720 -35748810 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1237 764 37 266 0 chr12 85508720 85508829 -35748701 - B1_Mus2 SINE Alu -9 138 1 1 1237 665 230 33 0 chr12 85508842 85508994 -35748536 + RSINE1 SINE B4 4 160 -5 1 1237 1504 53 0 45 chr12 85509066 85509264 -35748266 + B2_Mm2 SINE B2 1 189 -6 2 1237 180 0 0 0 chr12 85509266 85509286 -35748244 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1237 339 266 184 8 chr12 85509343 85509468 -35748062 - B1_Mm SINE Alu 0 147 1 2 1237 1030 85 145 47 chr12 85509695 85509867 -35747663 + B2_Mm2 SINE B2 2 190 -5 2 1237 189 0 0 0 chr12 85510019 85510040 -35747490 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1237 267 236 50 109 chr12 85510136 85510255 -35747275 + MT2B LTR ERVL 146 257 -344 2 1237 579 219 42 35 chr12 85510161 85510303 -35747227 + B1_Mur3 SINE Alu 7 149 0 2 1237 699 294 101 45 chr12 85510310 85510776 -35746754 + L1MEg LINE L1 1304 1795 -4289 1 1237 267 79 0 0 chr12 85511063 85511101 -35746429 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1237 305 305 124 50 chr12 85511213 85511419 -35746111 + L1MA8 LINE L1 5929 6146 -145 2 1237 324 0 0 0 chr12 85511419 85511455 -35746075 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1237 305 305 124 50 chr12 85511455 85511586 -35745944 + L1MA8 LINE L1 6147 6290 -1 2 1237 615 220 12 8 chr12 85512050 85512198 -35745332 + B3 SINE B2 6 151 -42 3 1237 840 168 46 0 chr12 85512225 85512356 -35745174 + B1_Mur3 SINE Alu 2 138 -11 3 1237 189 0 0 0 chr12 85512358 85512379 -35745151 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1237 186 43 0 0 chr12 85513356 85513379 -35744151 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1237 369 0 0 0 chr12 85517250 85517291 -35740239 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1237 271 297 192 27 chr12 85517904 85518091 -35739439 - MIRc SINE MIR 0 262 45 3 1237 255 309 12 0 chr12 85519339 85519420 -35738110 - PB1D10 SINE Alu -31 86 5 3 1237 1290 87 35 0 chr12 85520531 85520704 -35736826 + B2_Mm1a SINE B2 1 179 -14 3 1237 364 125 325 18 chr12 85520732 85520846 -35736684 + B2_Mm2 SINE B2 47 195 0 3 1237 908 250 132 8 chr12 85521614 85521872 -35735658 + B4A SINE B4 3 292 0 3 1237 409 285 126 12 chr12 85522238 85522405 -35735125 - L2c LINE L2 -1 3425 3240 4 1237 313 286 55 0 chr12 85523304 85523465 -35734065 + L1M4c LINE L1 2257 2433 -3951 4 1237 563 117 0 11 chr12 85523465 85523560 -35733970 + (TTTC)n Simple_repeat Simple_repeat 1 94 0 4 1237 862 189 7 0 chr12 85523560 85523708 -35733822 - B1_Mur3 SINE Alu 0 149 1 4 1237 261 321 7 81 chr12 85523751 85523787 -35733743 + MT2B LTR ERVL 151 285 -313 4 1237 681 156 0 9 chr12 85523787 85523897 -35733633 + B1_Mur1 SINE Alu 31 139 -10 4 1237 1352 216 24 17 chr12 85523938 85524226 -35733304 + B4A SINE B4 1 290 -2 4 1237 938 258 123 68 chr12 85524290 85524560 -35732970 + L1M4c LINE L1 2497 2782 -3600 4 1237 353 216 170 30 chr12 85524560 85524660 -35732870 - PB1D7 SINE Alu -5 115 2 4 1237 938 258 123 68 chr12 85524660 85524846 -35732684 + L1M4c LINE L1 2783 2980 -3402 4 1237 1296 69 69 0 chr12 85524846 85525020 -35732510 - B2_Mm2 SINE B2 -8 187 2 4 1237 938 258 123 68 chr12 85525020 85525123 -35732407 + L1M4c LINE L1 2981 3088 -3294 4 1237 670 234 36 0 chr12 85525309 85525446 -35732084 + B1_Mur1 SINE Alu 1 142 -7 4 1237 241 206 82 68 chr12 85526303 85526330 -35731200 + B4A SINE B4 77 150 -142 5 1237 269 109 130 0 chr12 85526330 85526376 -35731154 + B1_Mur4 SINE Alu 15 66 -84 5 1237 2123 134 75 20 chr12 85527337 85527695 -35729835 - ORR1C1 LTR MaLR 0 378 1 5 1237 200 318 163 0 chr12 85528624 85528753 -35728777 + MIRb SINE MIR 112 261 -7 5 1237 459 0 0 0 chr12 85529546 85529597 -35727933 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1237 546 265 83 0 chr12 85530994 85531183 -35726347 - MIRb SINE MIR -52 216 6 5 1237 207 69 0 0 chr12 85531673 85531702 -35725828 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1237 425 240 88 11 chr12 85532007 85532125 -35725405 - PB1 SINE Alu 0 120 2 5 1237 184 240 20 0 chr12 85532159 85532209 -35725321 - L2b LINE L2 -3 3372 3322 5 1237 180 77 0 0 chr12 85534838 85534864 -35722666 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 1237 220 146 42 0 chr12 85535155 85535203 -35722327 + C-rich Low_complexity Low_complexity 2 51 0 6 1237 495 0 0 0 chr12 85535309 85535364 -35722166 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1237 207 267 25 62 chr12 85536139 85536219 -35721311 + MIR3 SINE MIR 131 207 -1 6 1237 1077 212 5 5 chr12 85537646 85537850 -35719680 + B3 SINE B2 6 209 -7 6 1237 242 313 72 0 chr12 85538090 85538173 -35719357 + B1F1 SINE Alu 9 97 -52 6 1237 645 38 0 0 chr12 85538181 85538261 -35719269 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 1237 366 272 40 19 chr12 85540663 85540775 -35716755 - PB1 SINE Alu 0 117 18 6 1237 840 154 42 0 chr12 85540824 85540967 -35716563 + B1_Mur4 SINE Alu 1 149 -1 6 1237 438 20 0 0 chr12 85540991 85541042 -35716488 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1237 559 288 25 0 chr12 85541042 85541195 -35716335 - B3A SINE B2 -40 158 2 6 1237 364 241 42 25 chr12 85541576 85541710 -35715820 - MIRb SINE MIR -82 186 40 7 1237 28 0 0 0 chr12 85541771 85541799 -35715731 + AT_rich Low_complexity Low_complexity 1 28 0 7 1237 691 204 213 38 chr12 85541843 85542026 -35715504 + B3 SINE B2 1 215 -1 7 1237 1082 90 21 0 chr12 85542127 85542272 -35715258 + B1_Mus1 SINE Alu 1 148 0 7 1237 444 238 14 71 chr12 85543649 85543789 -35713741 + Tigger16a DNA Tigger 790 921 -12 7 1237 569 279 31 31 chr12 85545861 85546020 -35711510 - B4A SINE B4 -130 162 4 7 1237 971 143 203 11 chr12 85546038 85546215 -35711315 + B3 SINE B2 2 212 -4 7 1237 180 0 0 0 chr12 85547209 85547229 -35710301 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1237 231 318 71 0 chr12 85547734 85547860 -35709670 - L2 LINE L2 -508 2911 2777 7 1237 562 148 109 66 chr12 85549093 85549230 -35708300 + URR1A DNA MER1_type 79 221 -5 7 1237 256 270 68 0 chr12 85549406 85549480 -35708050 + MLT1N2 LTR MaLR 452 530 -32 8 1237 244 239 0 0 chr12 85549583 85549629 -35707901 + ID4_ SINE ID 6 51 -32 8 1237 241 306 144 0 chr12 85550490 85550601 -35706929 + L2 LINE L2 2366 2492 -927 8 1237 668 147 127 37 chr12 85551144 85551278 -35706252 - B1_Mus1 SINE Alu 0 148 3 8 1237 241 290 52 31 chr12 85552484 85552580 -35704950 + PB1D10 SINE Alu 16 113 -4 8 1237 851 86 23 0 chr12 85553031 85553159 -35704371 + B1_Mur4 SINE Alu 20 150 0 8 1237 1043 80 0 13 chr12 85553192 85553344 -35704186 + (GAGAA)n Simple_repeat Simple_repeat 1 150 0 8 1237 211 175 0 34 chr12 85553719 85553778 -35703752 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1237 779 331 40 4 chr12 85553811 85554087 -35703443 - B4A SINE B4 -5 287 2 8 1237 368 312 9 18 chr12 85554434 85554548 -35702982 + RSINE1 SINE B4 53 165 0 8 1237 432 200 0 0 chr12 85555137 85555232 -35702298 + (CCA)n Simple_repeat Simple_repeat 1 95 0 9 1237 180 0 0 0 chr12 85556263 85556283 -35701247 + (C)n Simple_repeat Simple_repeat 1 20 0 9 1237 21 0 0 0 chr12 85556479 85556500 -35701030 + GC_rich Low_complexity Low_complexity 1 21 0 9 1237 1717 186 5 114 chr12 85557483 85557903 -35699627 + ORR1D1 LTR MaLR 1 374 0 9 1237 29 47 0 0 chr12 85559906 85559949 -35697581 + GC_rich Low_complexity Low_complexity 1 43 0 9 1237 195 42 0 0 chr12 85560744 85560768 -35696762 + (G)n Simple_repeat Simple_repeat 1 24 0 9 1237 228 200 32 48 chr12 85561472 85561535 -35695995 - Tigger1 DNA MER2_type -508 1910 1849 9 1237 745 285 145 46 chr12 85561648 85562022 -35695508 + MLT1F2 LTR MaLR 1 402 -146 9 1237 392 145 57 52 chr12 85562036 85562138 -35695392 + B1_Mur3 SINE Alu 5 149 0 9 1237 380 244 21 43 chr12 85562182 85562276 -35695254 + MLT1E1A LTR MaLR 564 655 -25 9 1237 269 175 0 100 chr12 85562294 85562364 -35695166 - ID4_ SINE ID -18 65 3 1 1237 388 211 10 114 chr12 85562874 85562999 -35694531 + ID4 SINE ID 1 114 -38 1 1237 456 284 8 8 chr12 85563130 85563247 -35694283 + PB1D10 SINE Alu 1 117 0 1 1237 396 0 0 0 chr12 85564039 85564083 -35693447 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1237 1211 54 0 0 chr12 85564552 85564699 -35692831 + B1_Mus1 SINE Alu 2 148 0 1 1237 1008 98 7 0 chr12 85564758 85564901 -35692629 + URR1A DNA MER1_type 83 226 0 1 1237 678 285 5 45 chr12 85565059 85565283 -35692247 + B3 SINE B2 2 216 0 1 1237 1413 89 16 5 chr12 85565461 85565652 -35691878 + B2_Mm2 SINE B2 1 193 -2 1 1237 647 206 0 71 chr12 85565940 85566081 -35691449 + RSINE1 SINE B4 2 132 -33 1 1237 1392 58 21 0 chr12 85566210 85566399 -35691131 + B2_Mm1a SINE B2 1 193 0 1 1237 453 302 7 98 chr12 85566401 85566544 -35690986 + MLT1D LTR MaLR 355 484 -21 1 1237 520 305 104 90 chr12 85566878 85567224 -35690306 + ORR1E LTR MaLR 9 359 0 1 1237 486 0 0 0 chr12 85567966 85568020 -35689510 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1237 1105 209 0 10 chr12 85568450 85568658 -35688872 + B3 SINE B2 2 207 -9 1 1237 888 159 0 0 chr12 85568669 85568826 -35688704 + GA-rich Low_complexity Low_complexity 1 157 0 1 1237 241 257 107 13 chr12 85569377 85569452 -35688078 + LTR40b LTR ERVL 1 82 -437 1 1237 249 57 0 0 chr12 85569453 85569488 -35688042 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1237 210 71 0 0 chr12 85569704 85569732 -35687798 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1237 1000 135 6 74 chr12 85569740 85569916 -35687614 - B2_Mm2 SINE B2 -31 164 1 1 1237 313 243 71 0 chr12 85569942 85570012 -35687518 + LTR40b LTR ERVL 382 456 -6 1 1237 1043 73 66 0 chr12 85570870 85571007 -35686523 + B1_Mus2 SINE Alu 2 147 0 1 1237 425 282 29 69 chr12 85571022 85571197 -35686333 + MER113 DNA MER1_type 219 386 -135 1 1237 300 27 0 0 chr12 85571199 85571236 -35686294 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 1 1237 367 200 0 13 chr12 85571236 85571250 -35686280 - ID_B1 SINE B4 -70 154 82 1 1237 419 100 0 0 chr12 85571250 85571310 -35686220 - B1_Mur4 SINE Alu -90 60 1 1 1237 1136 79 0 6 chr12 85571386 85571552 -35685978 + (TTC)n Simple_repeat Simple_repeat 3 167 0 1 1237 426 39 0 0 chr12 85571552 85571604 -35685926 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1237 330 152 0 0 chr12 85571667 85571726 -35685804 + L1MB8 LINE L1 6109 6167 -11 1 1237 218 316 53 0 chr12 85571743 85571819 -35685711 + ID4_ SINE ID 1 80 -3 1 1237 712 224 35 85 chr12 85571890 85572090 -35685440 + B3A SINE B2 9 198 0 1 1237 279 0 0 0 chr12 85572523 85572554 -35684976 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1237 1096 50 58 0 chr12 85572554 85572693 -35684837 - B1_Mus2 SINE Alu 0 147 1 1 1237 2720 138 121 10 chr12 85572787 85573293 -35684237 - RMER15 LTR ERVL -13 562 1 1 1237 843 186 108 16 chr12 85573491 85573677 -35683853 - B3 SINE B2 -11 205 3 1 1237 297 68 0 0 chr12 85573678 85573722 -35683808 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1237 719 235 66 57 chr12 85573722 85573934 -35683596 + MIRb SINE MIR 55 268 0 1 1237 275 229 27 0 chr12 85573979 85574040 -35683490 + L2c LINE L2 3266 3347 -40 1 1237 1439 69 16 0 chr12 85575019 85575208 -35682322 + B2_Mm2 SINE B2 2 193 -2 1 1237 204 73 23 68 chr12 85575277 85575321 -35682209 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1237 294 185 129 36 chr12 85575338 85575435 -35682095 + B1_Mus1 SINE Alu 2 103 -17 1 1237 496 101 0 22 chr12 85575582 85575673 -35681857 + (CAAAA)n Simple_repeat Simple_repeat 2 90 0 1 1237 272 318 27 0 chr12 85576132 85576242 -35681288 + MLT1N2 LTR MaLR 396 508 -54 1 1237 2044 131 94 8 chr12 85576478 85576840 -35680690 - ORR1B1 LTR MaLR -1 393 1 1 1237 219 69 0 0 chr12 85576892 85576921 -35680609 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 1 1237 738 154 39 26 chr12 85576922 85577075 -35680455 - B2_Mm2 SINE B2 -39 156 2 1 1237 664 156 127 32 chr12 85577195 85577321 -35680209 - B1_Mus1 SINE Alu -9 139 2 1 1237 491 270 18 18 chr12 85577783 85577949 -35679581 + L1MC3 LINE L1 6856 7021 -764 1 1237 313 263 58 48 chr12 85577954 85577971 -35679559 - BC1_Mm scRNA scRNA -46 106 90 1 1237 1565 42 16 0 chr12 85577971 85578160 -35679370 - B2_Mm1t SINE B2 0 193 2 1 1237 313 263 58 48 chr12 85578160 85578246 -35679284 - BC1_Mm scRNA scRNA -63 89 2 1 1237 843 169 249 6 chr12 85578279 85578452 -35679078 - B3 SINE B2 0 216 2 1 1237 503 298 46 7 chr12 85578523 85578675 -35678855 - B3A SINE B2 -37 161 4 1 1237 1282 62 0 0 chr12 85578758 85578918 -35678612 + B2_Mm2 SINE B2 2 161 -34 1 1237 186 43 0 0 chr12 85578920 85578943 -35678587 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1237 529 226 103 25 chr12 85579064 85579268 -35678262 + L1MC3 LINE L1 7421 7640 -145 1 1237 2341 155 68 131 chr12 85579292 85579850 -35677680 + RLTR28 LTR ERVL 2 524 0 1 1237 245 289 66 0 chr12 85580180 85580256 -35677274 - AluG_3 SINE Alu -89 222 142 1 1237 393 103 14 42 chr12 85580316 85580387 -35677143 + B1_Mus2 SINE Alu 79 147 0 1 1237 222 342 47 42 chr12 85581303 85581495 -35676035 + L2 LINE L2 1897 2089 -1330 1 1237 252 111 0 0 chr12 85581507 85581552 -35675978 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 1 1237 360 0 0 0 chr12 85581585 85581625 -35675905 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1237 660 48 0 0 chr12 85581986 85582070 -35675460 + (GA)n Simple_repeat Simple_repeat 2 85 0 1 1237 393 149 43 9 chr12 85582084 85582199 -35675331 + (TG)n Simple_repeat Simple_repeat 2 120 0 1 1237 963 151 106 48 chr12 85582535 85582699 -35674831 - MTC LTR MaLR -35 386 210 1 1237 1417 85 11 0 chr12 85582699 85582888 -35674642 - B2_Mm1a SINE B2 -2 191 1 1 1237 963 151 106 48 chr12 85582888 85582911 -35674619 - MTC LTR MaLR -212 209 188 1 1237 253 337 58 84 chr12 85582962 85583153 -35674377 - RLTR41 LTR ERV1 -63 383 198 1 1237 1084 130 65 5 chr12 85583373 85583559 -35673971 - MTC LTR MaLR -224 197 1 1 1237 747 159 40 40 chr12 85583754 85583905 -35673625 - URR1A DNA MER1_type -70 156 6 1 1237 351 0 0 0 chr12 85584060 85584099 -35673431 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1237 2041 127 35 3 chr12 85585148 85585463 -35672067 - ORR1A3 LTR MaLR -1 325 1 1 1237 254 204 0 0 chr12 85585493 85585537 -35671993 + RSINE1 SINE B4 8 51 -114 1 1237 294 230 51 51 chr12 85585502 85585580 -35671950 - B4 SINE B4 -104 188 111 1 1237 343 176 42 42 chr12 85585517 85585588 -35671942 - PB1D9 SINE Alu -33 87 17 1 1237 864 142 7 39 chr12 85585626 85585780 -35671750 - B1_Mur3 SINE Alu 0 149 1 1 1237 576 286 123 73 chr12 85585896 85586277 -35671253 - MLT1C LTR MaLR -34 433 34 1 1237 982 114 0 0 chr12 85586358 85586490 -35671040 + B1_Mus2 SINE Alu 12 143 -4 1 1237 624 165 90 8 chr12 85586536 85586670 -35670860 + B1_Mur3 SINE Alu 5 149 0 1 1237 435 258 81 29 chr12 85586978 85587114 -35670416 + B1F SINE Alu 2 144 -5 1 1237 683 130 61 68 chr12 85587126 85587274 -35670256 + B1_Mus2 SINE Alu 1 147 0 1 1237 337 280 44 29 chr12 85587277 85587413 -35670117 + GA-rich Low_complexity Low_complexity 3 140 0 1 1237 198 0 0 0 chr12 85587413 85587435 -35670095 + (CAAG)n Simple_repeat Simple_repeat 2 23 0 1 1237 668 245 32 19 chr12 85587928 85588086 -35669444 + B3 SINE B2 1 160 -56 1 1237 309 287 109 18 chr12 85588073 85588183 -35669347 - B3A SINE B2 -22 176 57 1 1237 21 57 0 0 chr12 85588183 85588218 -35669312 + AT_rich Low_complexity Low_complexity 1 35 0 1 1237 543 206 77 31 chr12 85588235 85588365 -35669165 - RSINE1 SINE B4 -13 152 17 1 1237 243 209 71 43 chr12 85588393 85588463 -35669067 - ID4_ SINE ID -9 74 3 1 1237 189 0 0 0 chr12 85588864 85588885 -35668645 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1237 1243 96 62 0 chr12 85588902 85589080 -35668450 - B2_Mm2 SINE B2 -6 189 1 1 1237 930 152 14 0 chr12 85589086 85589231 -35668299 - B1_Mus1 SINE Alu -1 147 1 1 1237 379 298 32 0 chr12 85589465 85589559 -35667971 - PB1D7 SINE Alu -2 118 22 1 1237 744 222 0 0 chr12 85589745 85589925 -35667605 + CT-rich Low_complexity Low_complexity 1 180 0 1 154 247 269 138 11 chr12 85589934 85590028 -35667502 - PB1D10 SINE Alu 0 117 12 1 1238 558 0 0 0 chr12 85590805 85590867 -35666663 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1238 647 161 67 17 chr12 85590867 85590980 -35666550 - B1_Mus1 SINE Alu -27 121 1 1 1238 250 103 0 0 chr12 85590981 85591020 -35666510 - B3A SINE B2 -159 39 1 1 1238 180 0 0 0 chr12 85591081 85591101 -35666429 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1238 319 303 17 60 chr12 85591103 85591219 -35666311 - RSINE1 SINE B4 0 165 55 1 1238 207 139 0 0 chr12 85591256 85591292 -35666238 + (TCC)n Simple_repeat Simple_repeat 3 38 0 1 1238 713 294 0 0 chr12 85591336 85591479 -35666051 - RSINE1 SINE B4 -21 144 2 1 1238 642 229 16 0 chr12 85591686 85591808 -35665722 + ID_B1 SINE B4 81 204 -20 1 1238 468 0 0 0 chr12 85591822 85591874 -35665656 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1238 429 20 0 0 chr12 85591874 85591923 -35665607 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1238 192 152 0 0 chr12 85592056 85592089 -35665441 + CT-rich Low_complexity Low_complexity 1 33 0 1 1238 588 107 0 0 chr12 85592298 85592401 -35665129 + (TC)n Simple_repeat Simple_repeat 1 103 0 2 1238 183 129 0 0 chr12 85592632 85592663 -35664867 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2 1238 872 203 10 51 chr12 85592670 85592867 -35664663 - B3A SINE B2 -7 191 3 2 1238 432 0 0 0 chr12 85593000 85593048 -35664482 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1238 659 191 0 0 chr12 85593057 85593167 -35664363 - PB1D9 SINE Alu -8 112 3 2 1238 776 200 0 21 chr12 85593183 85593326 -35664204 - B1_Mus2 SINE Alu -1 146 7 2 1238 544 225 133 66 chr12 85593331 85593512 -35664018 - B3A SINE B2 0 198 6 2 1238 259 241 0 0 chr12 85593589 85593643 -35663887 + ID4 SINE ID 19 72 -11 2 1238 474 18 0 0 chr12 85593643 85593698 -35663832 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1238 319 289 86 41 chr12 85593734 85593983 -35663547 - LTR16E2 LTR ERVL -4 534 278 2 1238 566 155 17 68 chr12 85594155 85594261 -35663269 - B1_Mur4 SINE Alu -11 139 37 2 1238 1144 116 41 0 chr12 85594261 85594433 -35663097 - B2_Mm2 SINE B2 -15 180 2 2 1238 566 155 17 68 chr12 85594433 85594444 -35663086 - B1_Mur4 SINE Alu -114 36 28 2 1238 1080 41 12 99 chr12 85594494 85594656 -35662874 - B1_Mus1 SINE Alu 0 148 1 2 1238 233 191 16 0 chr12 85594669 85594732 -35662798 - L1M4 LINE L1 -2645 3501 3438 2 1238 869 162 201 6 chr12 85595003 85595177 -35662353 - B3 SINE B2 -6 210 3 2 1238 207 0 0 0 chr12 85595289 85595312 -35662218 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1238 550 255 351 11 chr12 85595322 85595593 -35661937 - MTEa LTR MaLR -13 366 4 2 1238 490 260 38 11 chr12 85596035 85596210 -35661320 + L1M5 LINE L1 5640 5817 -423 2 1238 405 254 14 100 chr12 85596379 85596519 -35661011 + MT2B LTR ERVL 129 256 -345 2 1238 799 150 15 15 chr12 85596430 85596565 -35660965 + B1_Mus1 SINE Alu 12 146 -2 2 1238 347 268 60 89 chr12 85596663 85596831 -35660699 - RSINE1 SINE B4 0 165 3 2 1238 318 143 0 0 chr12 85596954 85597017 -35660513 + (T)n Simple_repeat Simple_repeat 1 63 0 2 1238 1206 75 0 0 chr12 85597017 85597164 -35660366 - B1_Mus1 SINE Alu 0 148 2 2 1238 1199 234 80 41 chr12 85597179 85597267 -35660263 - MTEa LTR MaLR -20 359 276 2 1238 2178 144 61 16 chr12 85597267 85597642 -35659888 + ORR1B1 LTR MaLR 1 392 -2 2 1238 1199 234 80 41 chr12 85597642 85597890 -35659640 - MTEa LTR MaLR -104 275 10 2 1238 432 287 33 0 chr12 85597890 85598012 -35659518 - MTEa-int LTR MaLR 0 1580 1455 2 1238 1791 279 81 9 chr12 85598014 85598557 -35658973 - MTEa-int LTR MaLR -254 1326 745 2 1238 357 343 95 0 chr12 85598565 85598702 -35658828 - MTEa-int LTR MaLR -938 642 493 2 1238 234 0 0 0 chr12 85598781 85598807 -35658723 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1238 306 0 0 0 chr12 85598903 85598937 -35658593 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1238 477 270 79 14 chr12 85598940 85599079 -35658451 - RSINE1 SINE B4 -16 149 2 2 1238 394 214 206 7 chr12 85599088 85599209 -35658321 - B4 SINE B4 -67 225 81 2 1238 1253 246 82 29 chr12 85600023 85600366 -35657164 - MTEa-int LTR MaLR -1219 361 1 2 1238 378 310 20 0 chr12 85600369 85600469 -35657061 - MTEa LTR MaLR -1 358 257 2 1238 387 0 0 0 chr12 85600538 85600581 -35656949 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2 1238 618 225 54 0 chr12 85600585 85600714 -35656816 - B1_Mur1 SINE Alu -13 136 1 2 1238 192 40 0 0 chr12 85600745 85600770 -35656760 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2 1238 242 238 100 45 chr12 85600770 85600880 -35656650 - Lx4B LINE L1 -14 7036 6921 2 1238 413 19 0 18 chr12 85600881 85600936 -35656594 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1238 338 265 58 69 chr12 85600940 85601114 -35656416 - RMER17C LTR ERVK -75 335 164 2 1238 336 315 30 97 chr12 85601059 85601224 -35656306 - LTR48 LTR ERV1 -631 156 3 2 1238 2461 83 3 12 chr12 85601797 85602127 -35655403 + ORR1A2 LTR MaLR 1 327 0 2 1238 267 189 0 0 chr12 85602882 85602935 -35654595 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1238 386 85 17 0 chr12 85602934 85602993 -35654537 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1238 464 210 6 0 chr12 85603116 85603273 -35654257 + (TG)n Simple_repeat Simple_repeat 1 158 0 2 1238 291 28 0 0 chr12 85603672 85603708 -35653822 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1238 757 197 22 0 chr12 85604120 85604257 -35653273 + B1_Mus2 SINE Alu 1 140 -7 2 1238 444 150 0 0 chr12 85604261 85604341 -35653189 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 2 1238 701 245 53 0 chr12 85604349 85604500 -35653030 + RSINE1 SINE B4 3 161 -4 2 1238 1504 203 77 109 chr12 85604889 85605293 -35652237 + MTD LTR MaLR 1 391 -28 2 1238 849 148 0 7 chr12 85605324 85605460 -35652070 - B1_Mus1 SINE Alu -12 136 2 2 1238 266 108 0 0 chr12 85605461 85605498 -35652032 + MTD LTR MaLR 375 411 -8 2 1238 305 304 145 107 chr12 85605766 85605839 -35651691 - MER34A LTR ERV1 -5 537 468 2 1238 916 139 89 34 chr12 85605839 85606018 -35651512 + B2_Mm2 SINE B2 1 189 -6 2 1238 465 304 145 107 chr12 85606018 85606460 -35651070 - MER34A LTR ERV1 -75 467 2 2 1238 856 235 58 14 chr12 85606575 85606782 -35650748 - B3 SINE B2 0 216 1 2 1238 450 61 30 0 chr12 85606974 85607040 -35650490 + B1_Mur3 SINE Alu 2 69 -80 2 1238 931 208 22 38 chr12 85607028 85607213 -35650317 - B3A SINE B2 -16 182 1 2 1238 4166 176 92 89 chr12 85607244 85607342 -35650188 - RMER1A Other Other -5 1025 903 2 1238 690 47 0 0 chr12 85607342 85607428 -35650102 + (CCA)n Simple_repeat Simple_repeat 1 86 0 2 1238 4166 176 92 89 chr12 85607428 85608325 -35649205 - RMER1A Other Other -128 902 28 2 1238 1617 246 34 130 chr12 85608326 85608951 -35648579 - RMER1B Other Other -558 508 1 2 1238 938 145 14 0 chr12 85609226 85609371 -35648159 - B1_Mus1 SINE Alu 0 148 2 2 1238 576 251 14 76 chr12 85609379 85609590 -35647940 - B3A SINE B2 0 198 1 2 1238 572 186 125 28 chr12 85609613 85609757 -35647773 - RSINE1 SINE B4 -6 159 2 2 1238 217 215 0 58 chr12 85609857 85609926 -35647604 + A-rich Low_complexity Low_complexity 3 67 0 2 1238 571 306 125 59 chr12 85610026 85610363 -35647167 - ORR1E LTR MaLR 0 359 1 2 1238 212 333 0 0 chr12 85611287 85611443 -35646087 + (TTATG)n Simple_repeat Simple_repeat 3 158 0 2 1238 919 249 14 5 chr12 85611706 85611916 -35645614 + B3 SINE B2 4 215 -1 2 1238 598 242 146 0 chr12 85612331 85612364 -35645166 - B3 SINE B2 -1 215 183 2 1238 186 43 0 0 chr12 85612364 85612387 -35645143 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2 1238 598 242 146 0 chr12 85612387 85612518 -35645012 - B3 SINE B2 -34 182 28 2 1238 1312 124 0 5 chr12 85612561 85612756 -35644774 - B2_Mm2 SINE B2 -1 194 1 2 1238 583 322 21 0 chr12 85612757 85612900 -35644630 + RSINE1 SINE B4 8 153 -12 2 1238 311 289 10 49 chr12 85613087 85613189 -35644341 - B1F SINE Alu -51 98 1 2 1238 533 264 8 8 chr12 85613197 85613327 -35644203 - B1_Mur1 SINE Alu -1 148 19 2 1238 984 143 111 5 chr12 85613643 85613833 -35643697 + URR1A DNA MER1_type 12 221 -5 2 1238 1608 37 5 10 chr12 85613834 85614027 -35643503 + B2_Mm1a SINE B2 2 193 0 2 1238 1155 68 0 0 chr12 85614048 85614195 -35643335 + B1_Mus1 SINE Alu 2 148 0 2 1238 555 184 0 34 chr12 85614334 85614452 -35643078 + RSINE1 SINE B4 2 115 -50 2 1238 1093 99 0 0 chr12 85615208 85615350 -35642180 - B1_Mus1 SINE Alu -5 143 2 2 1238 1176 68 0 0 chr12 85615550 85615696 -35641834 + B1_Mm SINE Alu 2 147 0 2 1238 243 88 0 0 chr12 85615698 85615732 -35641798 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1238 392 200 209 0 chr12 85615748 85615853 -35641677 - B1_Mur2 SINE Alu 0 149 23 2 1238 230 302 24 48 chr12 85615775 85615900 -35641630 - MT2B LTR ERVL -345 256 135 2 1238 4301 146 105 63 chr12 85615995 85616861 -35640669 - RMER19B LTR ERVK 0 902 1 2 1238 238 197 0 129 chr12 85616929 85616999 -35640531 + RSINE1 SINE B4 54 114 -51 2 1238 26 50 0 0 chr12 85617033 85617073 -35640457 + AT_rich Low_complexity Low_complexity 1 40 0 2 1238 2061 154 36 5 chr12 85617085 85617463 -35640067 + MTC LTR MaLR 1 390 -31 2 1238 1119 186 87 46 chr12 85617463 85617820 -35639710 + RMER6B LTR ERVK 1 461 0 2 1238 751 131 127 0 chr12 85617831 85618005 -35639525 + B2_Mm2 SINE B2 1 206 -10 2 1238 761 209 82 29 chr12 85618293 85618500 -35639030 + ID_B1 SINE B4 7 224 0 2 1238 934 244 15 0 chr12 85619508 85619709 -35637821 - B3 SINE B2 -12 204 1 2 1238 464 167 9 69 chr12 85619791 85619907 -35637623 + BC1_Mm scRNA scRNA 7 115 -37 2 1238 223 236 0 65 chr12 85620397 85620474 -35637056 + GA-rich Low_complexity Low_complexity 3 74 0 2 1238 381 212 47 0 chr12 85620677 85620762 -35636768 + B1F1 SINE Alu 61 149 0 2 1238 313 268 20 0 chr12 85620787 85620869 -35636661 - PB1D10 SINE Alu -15 105 20 2 1238 1575 42 0 31 chr12 85620932 85621126 -35636404 - B2_Mm1t SINE B2 -5 188 1 2 1238 1049 121 3 3 chr12 85621171 85621514 -35636016 + (CA)n Simple_repeat Simple_repeat 1 342 0 2 1238 348 178 674 0 chr12 85621923 85622052 -35635478 - B3 SINE B2 0 216 1 2 1238 623 206 69 0 chr12 85622355 85622486 -35635044 - B1_Mur4 SINE Alu 0 150 11 2 1238 1309 76 42 26 chr12 85622592 85622781 -35634749 + B2_Mm2 SINE B2 1 192 -3 2 1238 1104 76 0 14 chr12 85623001 85623148 -35634382 + B1_Mus2 SINE Alu 1 145 -2 2 1238 432 0 0 0 chr12 85623431 85623479 -35634051 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1238 843 100 0 8 chr12 85623479 85623610 -35633920 - B1_Mur4 SINE Alu -9 141 12 2 1238 236 224 60 0 chr12 85623625 85623692 -35633838 + MLT1H LTR MaLR 479 549 0 2 1238 395 0 0 163 chr12 85623714 85624145 -35633385 + (CAGAG)n Simple_repeat Simple_repeat 1 360 0 2 1238 569 210 36 7 chr12 85624784 85624912 -35632618 + B1_Mur4 SINE Alu 8 140 -10 2 1238 180 77 0 0 chr12 85624912 85624938 -35632592 + (CACAC)n Simple_repeat Simple_repeat 4 29 0 2 1238 743 116 141 13 chr12 85625609 85625758 -35631772 + URR1B DNA MER1_type 58 225 0 3 1238 208 298 50 60 chr12 85625758 85625858 -35631672 + MIR3 SINE MIR 104 202 -6 3 1238 225 163 0 23 chr12 85626497 85626541 -35630989 - L2c LINE L2 -16 3371 3329 3 1238 204 231 0 0 chr12 85626814 85626853 -35630677 + MIR SINE MIR 79 117 -145 3 1238 328 274 119 28 chr12 85627049 85627158 -35630372 - PB1 SINE Alu -2 125 7 3 1238 243 0 0 0 chr12 85627536 85627563 -35629967 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1238 427 272 28 49 chr12 85627563 85627706 -35629824 - ID_B1 SINE B4 -10 214 75 3 1238 771 301 5 10 chr12 85627760 85627968 -35629562 + MTE2b LTR MaLR 1 207 -172 3 1238 323 124 517 0 chr12 85627972 85628070 -35629460 - B2_Mm2 SINE B2 0 195 47 3 1238 819 125 138 0 chr12 85628090 85628242 -35629288 - B2_Mm1t SINE B2 -20 173 1 3 1238 745 192 60 28 chr12 85628242 85628417 -35629113 + MTE2b LTR MaLR 199 379 0 3 1238 685 203 148 0 chr12 85629509 85629691 -35627839 - B3 SINE B2 -6 210 2 3 1238 936 146 21 0 chr12 85629723 85629867 -35627663 + B1_Mur1 SINE Alu 2 148 -1 3 1238 743 268 75 38 chr12 85630132 85630372 -35627158 - MER2 DNA MER2_type -6 339 91 3 1238 1017 70 0 0 chr12 85630447 85630589 -35626941 - B1_Mus2 SINE Alu 0 147 6 3 1238 23 0 0 0 chr12 85630662 85630685 -35626845 + AT_rich Low_complexity Low_complexity 1 23 0 3 1238 525 118 164 0 chr12 85630914 85631024 -35626506 - B1_Mur4 SINE Alu 0 150 23 3 1238 219 243 191 19 chr12 85631032 85631137 -35626393 + MIRb SINE MIR 35 157 -111 3 1238 392 315 34 7 chr12 85631137 85631284 -35626246 + RSINE1 SINE B4 4 154 -11 3 1238 195 261 14 14 chr12 85631284 85631305 -35626225 + MIRm SINE MIR 159 178 -98 3 1238 255 61 0 0 chr12 85631358 85631391 -35626139 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 3 1238 963 77 14 7 chr12 85631391 85631535 -35625995 - B1_Mus2 SINE Alu 0 147 3 3 1238 643 206 130 0 chr12 85632172 85632303 -35625227 - B1_Mur1 SINE Alu -1 148 1 3 1238 594 232 87 0 chr12 85632353 85632491 -35625039 - RSINE1 SINE B4 -12 153 4 3 1238 222 338 39 0 chr12 85632511 85632588 -35624942 - ID4 SINE ID -3 80 1 3 1238 267 136 0 0 chr12 85632657 85632716 -35624814 + (T)n Simple_repeat Simple_repeat 1 59 0 3 1238 737 194 77 20 chr12 85632928 85633123 -35624407 - B3 SINE B2 -4 212 7 3 1238 437 132 121 0 chr12 85633455 85633538 -35623992 + B1_Mur4 SINE Alu 58 150 0 3 1238 1350 90 26 0 chr12 85634020 85634209 -35623321 - B2_Mm2 SINE B2 0 195 2 3 1238 825 49 0 302 chr12 85634240 85634445 -35623085 + B1_Mus1 SINE Alu 1 143 -5 3 1238 1433 122 66 92 chr12 85634445 85634482 -35623048 - ORR1A3 LTR MaLR -28 366 341 3 1238 1287 95 26 5 chr12 85634482 85634673 -35622857 - B2_Mm2 SINE B2 0 195 1 3 1238 1497 116 23 89 chr12 85634673 85634975 -35622555 - ORR1A3 LTR MaLR -42 284 3 3 1238 527 220 0 0 chr12 85634975 85635075 -35622455 - B3 SINE B2 -115 101 2 3 1238 1125 163 29 19 chr12 85635109 85635315 -35622215 - B3 SINE B2 -6 210 3 3 1238 3913 35 13 13 chr12 85635372 85635841 -35621689 - L1Md_F2 LINE L1 0 6582 6114 3 1238 461 228 20 10 chr12 85635844 85635946 -35621584 - B1_Mur1 SINE Alu 0 149 47 3 1238 440 217 57 16 chr12 85635993 85636115 -35621415 + B1_Mur2 SINE Alu 3 129 -20 3 1238 703 189 27 40 chr12 85636444 85636580 -35620950 + B1_Mur2 SINE Alu 1 136 -13 3 1238 234 0 0 0 chr12 85636580 85636606 -35620924 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1238 703 189 27 40 chr12 85636606 85636618 -35620912 + B1_Mur2 SINE Alu 137 147 -2 3 1238 400 232 131 39 chr12 85636743 85636873 -35620657 + RSINE1 SINE B4 3 144 -21 3 1238 414 246 74 0 chr12 85636888 85637010 -35620520 - L1M4 LINE L1 -443 5741 5611 3 1238 545 286 95 101 chr12 85637015 85637342 -35620188 - MLT2B3 LTR ERVL -218 336 12 3 1238 383 254 109 0 chr12 85637456 85637566 -35619964 - L1M4 LINE L1 -1185 4961 4840 3 1238 391 200 37 83 chr12 85637566 85637675 -35619855 + PB1D7 SINE Alu 5 108 -12 3 1238 237 33 0 0 chr12 85637693 85637723 -35619807 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1238 552 289 0 27 chr12 85637724 85637870 -35619660 - RSINE1 SINE B4 -18 147 6 3 1238 553 260 23 96 chr12 85637995 85638274 -35619256 - RSINE1 SINE B4 -13 279 44 3 1238 540 241 51 82 chr12 85638378 85638536 -35618994 - RSINE1 SINE B4 0 165 13 3 1238 246 204 0 0 chr12 85638548 85638597 -35618933 - L1M2 LINE L1 -1347 4796 4748 3 1238 799 159 0 0 chr12 85638699 85638825 -35618705 + B3 SINE B2 5 130 -86 3 1238 23 54 0 0 chr12 85639158 85639195 -35618335 + AT_rich Low_complexity Low_complexity 1 37 0 3 1238 1318 93 0 27 chr12 85639432 85639620 -35617910 + B2_Mm2 SINE B2 1 183 -12 3 1238 1065 94 0 0 chr12 85639727 85639865 -35617665 + B1_Mus2 SINE Alu 2 139 -8 3 1238 655 143 7 91 chr12 85640062 85640216 -35617314 - B1_Mur2 SINE Alu 0 149 9 3 1238 641 252 13 58 chr12 85640393 85640549 -35616981 + B1_Mur1 SINE Alu 1 149 0 3 1238 545 139 207 9 chr12 85640887 85641003 -35616527 - B1_Mur3 SINE Alu -9 140 2 3 1238 1015 196 32 32 chr12 85641010 85641226 -35616304 - B3 SINE B2 0 216 1 3 1238 769 260 29 20 chr12 85641251 85641455 -35616075 - ID_B1 SINE B4 -17 207 2 3 1238 2320 285 107 25 chr12 85641503 85642399 -35615131 - Lx8 LINE L1 -272 7201 6232 3 1238 1468 33 22 11 chr12 85642441 85642625 -35614905 - B2_Mm2 SINE B2 -8 187 2 3 1238 479 341 82 31 chr12 85642836 85643154 -35614376 - MLT1A LTR MaLR -35 339 6 3 1238 1020 257 9 0 chr12 85643461 85643675 -35613855 + ID_B1 SINE B4 2 217 -7 3 1238 303 277 0 0 chr12 85643700 85643765 -35613765 + Lx8 LINE L1 7271 7335 -138 3 1238 222 37 0 0 chr12 85643765 85643792 -35613738 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1238 694 211 86 12 chr12 85643949 85644112 -35613418 - B3A SINE B2 -22 176 2 3 1238 550 278 33 0 chr12 85644338 85644489 -35613041 + B3 SINE B2 2 157 -59 3 1238 218 32 32 0 chr12 85644489 85644520 -35613010 + (CATA)n Simple_repeat Simple_repeat 3 34 0 3 1238 1631 133 186 10 chr12 85644563 85644875 -35612655 - ORR1B2 LTR MaLR 0 367 1 3 1238 223 233 0 16 chr12 85644876 85644937 -35612593 + ID4 SINE ID 1 60 -23 3 1238 254 247 29 58 chr12 85645014 85645117 -35612413 - PB1D10 SINE Alu -1 116 17 3 1238 1104 279 52 14 chr12 85645212 85645558 -35611972 - MTE2b LTR MaLR -20 359 1 3 1238 1200 187 193 3 chr12 85645563 85645874 -35611656 + ORR1D2 LTR MaLR 1 370 0 3 1238 353 170 243 9 chr12 85646069 85646176 -35611354 - B1_Mur2 SINE Alu 0 149 18 3 1238 262 228 53 0 chr12 85646201 85646258 -35611272 + B4A SINE B4 81 140 -152 3 1238 465 184 24 121 chr12 85646211 85646335 -35611195 + PB1D9 SINE Alu 9 120 0 3 1238 225 0 0 0 chr12 85646335 85646360 -35611170 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 3 1238 1463 185 167 6 chr12 85646424 85646778 -35610752 - MTC LTR MaLR -10 411 1 3 1238 1313 77 21 21 chr12 85647559 85647746 -35609784 - B2_Mm1a SINE B2 -6 187 1 3 1238 531 239 53 83 chr12 85647784 85647953 -35609577 + B3A SINE B2 2 165 -33 3 1238 2250 128 82 6 chr12 85647960 85648315 -35609215 - RLTR14 LTR ERV1 0 382 1 3 1238 365 118 29 0 chr12 85648320 85648388 -35609142 + (CATA)n Simple_repeat Simple_repeat 3 72 0 3 1238 23 0 0 0 chr12 85648563 85648586 -35608944 + AT_rich Low_complexity Low_complexity 1 23 0 3 1238 354 217 408 0 chr12 85649389 85649546 -35607984 - ID_B1 SINE B4 -1 223 3 3 1238 509 270 16 22 chr12 85649631 85649813 -35607717 + B3A SINE B2 2 182 -16 3 1238 616 218 123 28 chr12 85649932 85650111 -35607419 + B3 SINE B2 21 216 0 3 1238 468 75 121 50 chr12 85650125 85650224 -35607306 - B1_Mus2 SINE Alu 0 147 42 3 1238 240 120 96 39 chr12 85650274 85650326 -35607204 - B1_Mus2 SINE Alu -92 55 1 3 1238 24 0 0 0 chr12 85650407 85650431 -35607099 + AT_rich Low_complexity Low_complexity 1 24 0 3 1238 1160 171 19 14 chr12 85650462 85650676 -35606854 - B3 SINE B2 -1 215 1 3 1238 1189 72 18 0 chr12 85650967 85651134 -35606396 + B2_Mm2 SINE B2 1 170 -25 3 1238 360 0 0 0 chr12 85651135 85651175 -35606355 + (CATA)n Simple_repeat Simple_repeat 4 43 0 3 1238 22 35 0 0 chr12 85651222 85651251 -35606279 + AT_rich Low_complexity Low_complexity 1 29 0 3 1238 469 210 172 14 chr12 85651330 85651475 -35606055 + ID_B1 SINE B4 2 169 -55 3 1238 318 255 32 0 chr12 85651587 85651681 -35605849 + B1_Mur3 SINE Alu 1 97 -52 3 1238 759 92 0 0 chr12 85652209 85652318 -35605212 + (TC)n Simple_repeat Simple_repeat 1 109 0 3 1238 376 280 29 48 chr12 85652318 85652423 -35605107 - ID_B1 SINE B4 -36 188 86 3 1238 454 292 167 56 chr12 85652711 85653034 -35604496 - ORR1E LTR MaLR 0 359 1 3 1238 1652 36 5 0 chr12 85653214 85653406 -35604124 - B2_Mm1t SINE B2 0 193 1 3 1238 275 292 164 21 chr12 85653783 85653923 -35603607 - ID_B1 SINE B4 -63 161 2 3 1238 344 223 51 1 chr12 85654180 85654275 -35603255 - PB1D10 SINE Alu -36 113 13 3 1238 323 243 83 55 chr12 85654320 85654336 -35603194 + B4 SINE B4 68 86 -206 3 1238 498 167 21 43 chr12 85654336 85654430 -35603100 + B1_Mur4 SINE Alu 1 92 -58 3 1238 741 290 24 29 chr12 85654394 85654600 -35602930 - B3 SINE B2 -11 205 1 3 1238 511 115 250 0 chr12 85654627 85654731 -35602799 - B1_Mur4 SINE Alu -15 135 6 4 1238 225 0 0 0 chr12 85654745 85654770 -35602760 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1238 1159 144 119 0 chr12 85655156 85655358 -35602172 + URR1A DNA MER1_type 1 226 0 4 1238 345 278 45 18 chr12 85655405 85655515 -35602015 - PB1D10 SINE Alu -1 116 4 4 1238 180 0 0 0 chr12 85655743 85655763 -35601767 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1238 628 198 47 83 chr12 85655918 85656111 -35601419 - B3 SINE B2 -28 188 3 4 1238 226 292 125 44 chr12 85656358 85656379 -35601151 - ID_B1 SINE B4 -2 222 81 4 1238 405 250 9 18 chr12 85656379 85656489 -35601041 - B1_Mur2 SINE Alu -40 109 1 4 1238 310 208 165 10 chr12 85657300 85657397 -35600133 - PB1D9 SINE Alu 0 120 9 4 1238 437 244 93 16 chr12 85659628 85659757 -35597773 + B1_Mur1 SINE Alu 1 139 -10 4 1238 554 184 109 58 chr12 85659879 85660035 -35597495 + B3 SINE B2 50 213 -3 4 1238 727 210 7 21 chr12 85660088 85660229 -35597301 - B1_Mur1 SINE Alu -9 140 2 4 1238 533 286 82 0 chr12 85661190 85661337 -35596193 - RSINE1 SINE B4 -4 161 3 4 1238 232 274 132 9 chr12 85661788 85661902 -35595628 - B1_Mur4 SINE Alu -11 139 12 4 1238 307 283 39 39 chr12 85662228 85662331 -35595199 + B1F2 SINE Alu 19 121 -28 4 1238 623 255 29 72 chr12 85662351 85662558 -35594972 + B3A SINE B2 1 198 0 4 1238 26 93 0 0 chr12 85663162 85663237 -35594293 + AT_rich Low_complexity Low_complexity 1 75 0 4 1238 418 198 56 9 chr12 85664446 85664553 -35592977 - PB1D9 SINE Alu 0 120 9 4 1238 305 197 14 0 chr12 85664588 85664659 -35592871 + CT-rich Low_complexity Low_complexity 2 73 0 4 1238 654 255 87 0 chr12 85664829 85664990 -35592540 + B3 SINE B2 1 175 -41 4 1238 27 0 0 0 chr12 85665058 85665085 -35592445 + AT_rich Low_complexity Low_complexity 1 27 0 4 1238 553 291 70 32 chr12 85665121 85665277 -35592253 - RSINE1 SINE B4 -1 164 3 4 1238 327 209 44 44 chr12 85665760 85665850 -35591680 - L1MB3 LINE L1 -12 6171 6082 4 1238 539 172 21 0 chr12 85666137 85666230 -35591300 - B1_Mur3 SINE Alu -7 142 48 4 1238 427 242 63 0 chr12 85667702 85667797 -35589733 + PB1D7 SINE Alu 15 115 -5 4 1238 22 0 0 0 chr12 85667800 85667822 -35589708 + AT_rich Low_complexity Low_complexity 1 22 0 4 1238 509 248 10 0 chr12 85667825 85667926 -35589604 + B1_Mur2 SINE Alu 2 103 -46 4 1238 220 97 0 0 chr12 85667920 85667951 -35589579 - B3 SINE B2 -185 31 1 4 1238 254 300 66 16 chr12 85668470 85668592 -35588938 - RMER17C LTR ERVK -282 128 1 4 1238 259 157 78 0 chr12 85669099 85669150 -35588380 + B3A SINE B2 78 132 -66 4 1238 24 0 0 0 chr12 85669446 85669470 -35588060 + AT_rich Low_complexity Low_complexity 1 24 0 4 1238 1332 79 16 22 chr12 85669470 85669652 -35587878 - B2_Mm2 SINE B2 -13 182 2 4 1238 3780 59 44 14 chr12 85669719 85670221 -35587309 + L1Md_F2 LINE L1 6066 6582 0 4 1238 255 265 0 68 chr12 85671127 85671149 -35586381 - PB1 SINE Alu -23 104 86 4 1238 1426 60 42 21 chr12 85671149 85671338 -35586192 - B2_Mm1t SINE B2 0 193 1 4 1238 255 265 0 68 chr12 85671338 85671388 -35586142 - PB1 SINE Alu -42 85 37 4 1238 183 42 0 0 chr12 85671507 85671531 -35585999 + (TTGTG)n Simple_repeat Simple_repeat 4 27 0 4 1238 269 337 61 0 chr12 85671532 85671630 -35585900 - PB1D10 SINE Alu -13 104 1 4 1238 1428 39 79 0 chr12 85671824 85671841 -35585689 - B2_Mm1a SINE B2 -1 192 176 4 1238 351 0 0 0 chr12 85671841 85671880 -35585650 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4 1238 1428 39 79 0 chr12 85671880 85672040 -35585490 - B2_Mm1a SINE B2 -18 175 2 4 1238 450 186 62 0 chr12 85672104 85672232 -35585298 + B3 SINE B2 6 216 0 4 1238 507 212 203 0 chr12 85672242 85672360 -35585170 + B1_Mus1 SINE Alu 1 142 -6 4 1238 304 270 78 106 chr12 85673508 85673600 -35583930 + B1_Mur2 SINE Alu 12 103 -46 4 1238 261 0 0 0 chr12 85673600 85673629 -35583901 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 4 1238 304 270 78 106 chr12 85673629 85673677 -35583853 + B1_Mur2 SINE Alu 104 148 -1 4 1238 216 375 34 0 chr12 85674714 85674727 -35582803 - B1F2 SINE Alu -39 110 20 4 1238 311 307 0 0 chr12 85674727 85674802 -35582728 - ID_B1 SINE B4 -49 175 101 4 1238 24 0 0 0 chr12 85675116 85675140 -35582390 + AT_rich Low_complexity Low_complexity 1 24 0 4 1238 295 216 149 12 chr12 85675576 85675672 -35581858 + MIR SINE MIR 32 135 -73 4 1238 27 29 0 0 chr12 85675723 85675757 -35581773 + AT_rich Low_complexity Low_complexity 1 34 0 4 1238 272 303 0 0 chr12 85675757 85675823 -35581707 - ID4_ SINE ID -16 67 2 4 1238 375 248 19 56 chr12 85675982 85676089 -35581441 - BC1_Mm scRNA scRNA -48 104 2 4 1238 459 286 90 8 chr12 85676420 85676554 -35580976 - B1F2 SINE Alu 0 149 5 4 1238 284 258 68 61 chr12 85676695 85676827 -35580703 + B3 SINE B2 84 216 0 4 1238 663 144 0 0 chr12 85676853 85676964 -35580566 + (TCCC)n Simple_repeat Simple_repeat 2 112 0 4 1238 244 206 0 17 chr12 85677004 85677057 -35580473 - B1_Mus1 SINE Alu -101 49 1 4 1238 458 211 128 16 chr12 85677086 85677211 -35580319 + B1F SINE Alu 2 140 -9 4 1238 284 278 43 22 chr12 85677229 85677321 -35580209 - B1F SINE Alu -19 130 37 4 1238 954 92 35 0 chr12 85677669 85677811 -35579719 + B1_Mus1 SINE Alu 2 148 0 4 1238 891 141 14 34 chr12 85677828 85677975 -35579555 + B1_Mus1 SINE Alu 1 144 -4 4 1238 300 294 69 1 chr12 85677975 85678087 -35579443 + MER102b DNA MER1_type 160 285 -56 4 1238 435 243 159 1 chr12 85679051 85679191 -35578339 + ID_B1 SINE B4 81 240 -52 4 1238 236 271 27 116 chr12 85680209 85680355 -35577175 - L2c LINE L2 -10 3377 3245 4 1238 1058 30 96 0 chr12 85681319 85681454 -35576076 - B1_Mus1 SINE Alu 0 148 1 4 1238 301 271 137 29 chr12 85681469 85681644 -35575886 - L1MEg LINE L1 -4868 1216 1023 4 1238 356 152 294 16 chr12 85681687 85681813 -35575717 - B2_Mm2 SINE B2 -6 189 29 4 1238 1403 62 11 0 chr12 85681823 85682000 -35575530 - B2_Mm1t SINE B2 -14 179 1 4 1238 299 315 67 0 chr12 85682588 85682677 -35574853 + B1F SINE Alu 6 100 -49 4 1238 801 153 51 7 chr12 85682841 85682979 -35574551 + B1_Mur4 SINE Alu 6 149 -1 4 1238 195 69 0 0 chr12 85682985 85683014 -35574516 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1238 234 281 83 46 chr12 85683050 85683158 -35574372 + PB1D10 SINE Alu 4 115 -2 4 1238 524 244 16 32 chr12 85683482 85683605 -35573925 + B4A SINE B4 6 126 -166 4 1238 596 151 114 45 chr12 85683658 85683790 -35573740 + B1_Mur2 SINE Alu 9 149 0 4 1238 529 209 17 52 chr12 85683807 85683923 -35573607 + B3 SINE B2 1 112 -104 4 1238 478 270 53 35 chr12 85684677 85684699 -35572831 + CYRA11_Mm Unknown Y-chromosome 149 173 -444 4 1238 1198 104 0 0 chr12 85684699 85684862 -35572668 - URR1A DNA MER1_type -2 224 62 4 1238 690 137 144 8 chr12 85684924 85685042 -35572488 - B1_Mus2 SINE Alu -5 142 9 4 1238 271 270 27 107 chr12 85685122 85685234 -35572296 + MT2B LTR ERVL 154 256 -345 4 1238 375 254 62 0 chr12 85685143 85685264 -35572266 + B1F SINE Alu 10 148 -1 4 1238 437 292 62 0 chr12 85685288 85685401 -35572129 + B1_Mur1 SINE Alu 30 149 0 4 1238 400 198 118 36 chr12 85685433 85685543 -35571987 + B3A SINE B2 2 120 -78 4 1238 1180 61 14 0 chr12 85685627 85685774 -35571756 - B1_Mur4 SINE Alu 0 150 2 4 1238 758 125 64 29 chr12 85685917 85686057 -35571473 + B1_Mur4 SINE Alu 1 145 -5 4 1238 423 286 131 30 chr12 85686459 85686584 -35570946 + MER20 DNA MER1_type 2 145 -74 4 1238 1344 86 16 5 chr12 85686584 85686771 -35570759 + B2_Mm2 SINE B2 1 189 -6 4 1238 423 286 131 30 chr12 85686771 85686843 -35570687 + MER20 DNA MER1_type 146 218 -1 4 1238 495 269 44 15 chr12 85688667 85688803 -35568727 + B1F SINE Alu 1 140 -9 4 1238 578 291 106 45 chr12 85688866 85689111 -35568419 - MTEa LTR MaLR -117 262 3 4 1238 749 259 64 22 chr12 85689806 85690024 -35567506 - B3A SINE B2 -1 215 1 4 1238 239 278 186 25 chr12 85690091 85690127 -35567403 + B1F1 SINE Alu 3 139 -10 4 1238 281 259 24 12 chr12 85690127 85690209 -35567321 + ID_B1 SINE B4 132 214 -10 4 1238 191 323 175 12 chr12 85690384 85690550 -35566980 - MIRb SINE MIR -8 260 68 4 1238 4504 203 97 22 chr12 85691249 85692283 -35565247 - MurERV4-int LTR ERVK -3530 1730 620 4 1238 898 311 67 16 chr12 85692346 85692734 -35564796 - MurERV4-int LTR ERVK -4728 532 125 4 1238 415 160 11 11 chr12 85693186 85693281 -35564249 + CT-rich Low_complexity Low_complexity 2 96 0 4 1238 268 167 30 15 chr12 85693626 85693693 -35563837 + GA-rich Low_complexity Low_complexity 3 70 0 4 1238 706 206 22 0 chr12 85694039 85694175 -35563355 - RSINE1 SINE B4 -25 140 2 4 1238 477 274 29 57 chr12 85694180 85694389 -35563141 - B4A SINE B4 -89 203 1 4 1238 789 262 108 6 chr12 85695073 85695417 -35562113 + MTE2a LTR MaLR 1 379 0 4 1238 240 314 28 37 chr12 85696048 85696157 -35561373 - PB1D7 SINE Alu -8 112 5 4 1238 1029 135 101 6 chr12 85696453 85696632 -35560898 + URR1A DNA MER1_type 1 196 -30 4 1238 268 83 0 0 chr12 85696633 85696669 -35560861 + URR1A DNA MER1_type 159 194 -32 4 1238 485 90 0 0 chr12 85696671 85696738 -35560792 + URR1A DNA MER1_type 159 225 -1 4 1238 180 225 25 0 chr12 85696999 85697039 -35560491 + L3 LINE CR1 122 162 -4327 4 1238 387 0 0 0 chr12 85697919 85697962 -35559568 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1238 929 218 12 0 chr12 85698122 85698292 -35559238 + B3 SINE B2 2 173 -43 4 1238 3437 33 2 0 chr12 85699409 85699804 -35557726 + MTA_Mm LTR MaLR 1 396 0 5 1238 2461 141 42 10 chr12 85699870 85700278 -35557252 - MTC LTR MaLR 0 421 1 5 1238 283 280 39 29 chr12 85700732 85700835 -35556695 - Tigger5 DNA MER2_type 0 2406 2303 5 1238 238 367 56 28 chr12 85700833 85700965 -35556565 - Tigger5 DNA MER2_type -2172 234 99 5 1238 433 239 11 0 chr12 85700965 85701057 -35556473 + BC1_Mm scRNA scRNA 2 94 -58 5 1238 234 256 108 100 chr12 85701032 85701069 -35556461 - MER47A DNA MER2_type -235 131 94 5 1238 1238 47 0 0 chr12 85701069 85701217 -35556313 + B1_Mus1 SINE Alu 1 148 0 5 1238 234 256 108 100 chr12 85701217 85701309 -35556221 - MER47A DNA MER2_type -273 93 1 5 1238 287 304 12 12 chr12 85701583 85701663 -35555867 - PB1D10 SINE Alu -37 80 1 5 1238 360 301 82 24 chr12 85701756 85701812 -35555718 + CYRA11_Mm Unknown Y-chromosome 111 327 -287 5 1238 874 122 54 7 chr12 85701812 85701961 -35555569 - URR1A DNA MER1_type 0 226 71 5 1238 431 209 23 0 chr12 85703448 85703534 -35553996 - B1_Mur3 SINE Alu -59 90 3 5 1238 433 257 39 120 chr12 85703544 85703827 -35553703 - L1MB8 LINE L1 -10 6168 5909 5 1238 612 269 135 31 chr12 85703921 85704247 -35553283 - L1MB8 LINE L1 -441 5737 5378 5 1238 289 98 0 24 chr12 85704525 85704567 -35552963 + ID_B1 SINE B4 132 172 -52 5 1238 272 127 58 87 chr12 85704567 85704594 -35552936 + PB1D10 SINE Alu 51 117 0 5 1238 340 336 26 0 chr12 85704632 85704745 -35552785 - PB1D9 SINE Alu -1 119 4 5 1238 189 94 0 0 chr12 85705789 85705821 -35551709 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1238 1219 48 0 0 chr12 85705821 85705968 -35551562 - B1_Mus2 SINE Alu 0 147 1 5 1238 446 290 55 28 chr12 85706006 85706187 -35551343 - B3A SINE B2 -6 192 7 5 1238 1109 45 30 0 chr12 85706430 85706564 -35550966 - B1_Mus2 SINE Alu -8 139 2 5 1238 302 212 0 66 chr12 85706569 85706634 -35550896 + T-rich Low_complexity Low_complexity 23 85 0 5 1238 432 44 576 11 chr12 85706634 85706726 -35550804 - B1_Mus1 SINE Alu -3 145 2 5 1238 302 212 0 66 chr12 85706726 85706751 -35550779 + T-rich Low_complexity Low_complexity 1 22 0 5 1238 1021 46 0 30 chr12 85706753 85706888 -35550642 - B1_Mm SINE Alu 0 147 17 5 1238 569 226 20 158 chr12 85706888 85706998 -35550532 - ID_B1 SINE B4 0 222 12 5 1238 358 192 62 25 chr12 85707467 85707547 -35549983 - PB1D7 SINE Alu 0 120 38 5 1238 250 264 131 6 chr12 85707591 85707774 -35549756 - L1MA4 LINE L1 -12 6288 6083 5 1238 211 292 90 0 chr12 85708484 85708573 -35548957 - B4 SINE B4 -153 139 43 5 1238 180 0 0 0 chr12 85708638 85708658 -35548872 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1238 253 247 191 0 chr12 85709298 85709387 -35548143 - PB1D10 SINE Alu 0 117 12 5 1238 251 176 59 0 chr12 85709729 85709780 -35547750 + PB1D9 SINE Alu 1 54 -66 5 1238 218 156 138 15 chr12 85709780 85709794 -35547736 + B4A SINE B4 86 158 -134 5 1238 323 284 55 30 chr12 85709838 85709874 -35547656 + L1MB7 LINE L1 5576 5613 -264 5 1238 180 0 0 0 chr12 85709874 85709894 -35547636 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1238 786 249 49 14 chr12 85709894 85710129 -35547401 + L1MB7 LINE L1 5614 5894 -290 5 1238 226 114 12 112 chr12 85710188 85710243 -35547287 + B1_Mus2 SINE Alu 91 148 -1 5 1238 327 25 0 0 chr12 85710334 85710374 -35547156 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 5 1238 297 299 9 0 chr12 85710439 85710546 -35546984 - L1MA6 LINE L1 -155 6145 6038 5 1238 379 263 97 83 chr12 85710548 85710693 -35546837 + B4A SINE B4 78 224 -68 5 1238 766 145 52 22 chr12 85710564 85710698 -35546832 + B1_Mur4 SINE Alu 12 149 -1 5 1238 614 205 94 0 chr12 85710853 85710980 -35546550 - B1_Mur3 SINE Alu -10 139 1 5 1238 25 0 0 0 chr12 85713803 85713828 -35543702 + AT_rich Low_complexity Low_complexity 1 25 0 5 1238 802 185 117 0 chr12 85714003 85714165 -35543365 + B3 SINE B2 2 182 -34 5 1238 276 235 134 12 chr12 85714207 85714289 -35543241 + B3 SINE B2 2 93 -123 5 1238 460 289 80 7 chr12 85714324 85714474 -35543056 - RSINE1 SINE B4 -4 161 1 5 1238 767 157 55 41 chr12 85715895 85716041 -35541489 + B1_Mur4 SINE Alu 2 149 -1 5 1238 243 270 79 0 chr12 85716224 85716287 -35541243 - ID4_ SINE ID 0 83 16 5 1238 336 271 0 30 chr12 85716321 85716420 -35541110 - PB1D10 SINE Alu -18 99 4 5 1238 291 246 0 30 chr12 85717068 85717135 -35540395 + tRNA-Ala-GCY_ tRNA tRNA 9 73 -2 5 1238 523 232 49 35 chr12 85717467 85717610 -35539920 + B1F SINE Alu 5 149 0 5 1238 781 238 62 38 chr12 85718933 85719143 -35538387 - B3A SINE B2 -1 215 1 5 1238 1062 224 9 0 chr12 85719169 85719383 -35538147 - B3 SINE B2 0 216 1 5 1238 715 302 67 19 chr12 85720782 85720991 -35536539 + ID_B1 SINE B4 4 222 -2 5 1239 245 132 0 0 chr12 85721548 85721586 -35535944 + B3A SINE B2 3 40 -158 5 1239 902 139 42 0 chr12 85721587 85721731 -35535799 + B1_Mur4 SINE Alu 1 150 0 5 1239 380 143 14 0 chr12 85721747 85721817 -35535713 + GA-rich Low_complexity Low_complexity 2 72 0 5 1239 395 276 221 13 chr12 85721829 85721983 -35535547 + B3 SINE B2 27 212 -4 5 1239 288 261 113 0 chr12 85722088 85722203 -35535327 + L1MA10 LINE L1 6180 6307 -27 5 1239 234 281 11 63 chr12 85722203 85722298 -35535232 + ORR1E LTR MaLR 1 90 -269 5 1239 324 283 33 16 chr12 85722679 85722801 -35534729 + ID_B1 SINE B4 84 207 -17 5 1239 449 333 7 0 chr12 85722865 85723009 -35534521 + B1F1 SINE Alu 1 145 -4 5 1239 617 192 101 14 chr12 85723900 85724048 -35533482 - B3 SINE B2 -29 187 27 5 1239 575 201 118 7 chr12 85724076 85724211 -35533319 + B3 SINE B2 38 187 -29 5 1239 471 63 0 0 chr12 85724221 85724284 -35533246 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1239 3461 28 2 0 chr12 85724574 85724969 -35532561 + MTA_Mm LTR MaLR 1 396 0 5 1239 266 161 36 0 chr12 85727473 85727529 -35530001 - B3A SINE B2 -80 118 61 5 1239 392 328 23 0 chr12 85728640 85728768 -35528762 - RSINE1 SINE B4 -8 157 27 5 1239 1720 198 168 97 chr12 85729050 85729620 -35527910 + RMER19C LTR ERVK 1 611 0 5 1239 868 261 19 74 chr12 85729696 85729965 -35527565 - B4A SINE B4 0 292 39 5 1239 283 319 24 12 chr12 85730195 85730363 -35527167 + L2a LINE L2 3196 3365 -61 5 1239 342 115 0 0 chr12 85730385 85730437 -35527093 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 5 1239 807 216 59 0 chr12 85730458 85730662 -35526868 + B3 SINE B2 1 216 0 5 1239 1430 67 0 44 chr12 85730696 85730900 -35526630 + B2_Mm2 SINE B2 1 195 0 5 1239 390 240 19 9 chr12 85731448 85731553 -35525977 - B4A SINE B4 -185 107 2 5 1239 3057 67 21 3 chr12 85732029 85732418 -35525112 + MTA_Mm LTR MaLR 1 396 0 5 1239 352 222 65 18 chr12 85732765 85732926 -35524604 + RLTR13D3 LTR ERVK 979 1072 -42 5 1239 674 162 51 7 chr12 85732940 85733077 -35524453 + RSINE1 SINE B4 2 144 -21 5 1239 270 0 0 0 chr12 85733098 85733128 -35524402 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1239 191 36 36 0 chr12 85733973 85734001 -35523529 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1239 932 85 98 0 chr12 85734005 85734158 -35523372 - B2_Mm2 SINE B2 -20 175 8 5 1239 201 147 0 0 chr12 85734164 85734198 -35523332 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 5 1239 1054 189 29 19 chr12 85734280 85734490 -35523040 + B3 SINE B2 1 212 -4 5 1239 425 252 19 0 chr12 85734550 85734653 -35522877 - PB1D10 SINE Alu -8 109 5 5 1239 509 219 42 35 chr12 85734811 85734953 -35522577 - B1F SINE Alu -1 148 6 5 1239 490 276 23 35 chr12 85734956 85735129 -35522401 - B4A SINE B4 -118 174 4 5 1239 373 315 12 36 chr12 85735296 85735464 -35522066 + ID_B1 SINE B4 58 221 -3 5 1239 410 280 41 27 chr12 85735322 85735469 -35522061 + B1F1 SINE Alu 1 149 0 5 1239 398 240 8 0 chr12 85735691 85735820 -35521710 + GA-rich Low_complexity Low_complexity 2 131 0 5 1239 900 9 0 79 chr12 85735823 85736050 -35521480 + (GAA)n Simple_repeat Simple_repeat 1 208 0 5 1239 339 214 169 0 chr12 85736304 85736393 -35521137 - B1F SINE Alu -9 140 37 5 1239 521 268 59 60 chr12 85736704 85736937 -35520593 + RMER13A LTR ERVK 96 377 -531 5 1239 733 219 128 0 chr12 85737312 85737476 -35520054 - ID_B1 SINE B4 -37 187 3 5 1239 732 209 30 0 chr12 85738180 85738314 -35519216 - B1_Mur3 SINE Alu -10 139 2 5 1239 23 68 0 0 chr12 85738591 85738635 -35518895 + AT_rich Low_complexity Low_complexity 1 44 0 5 1239 208 131 21 21 chr12 85738685 85738732 -35518798 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 1239 713 220 138 6 chr12 85738842 85739016 -35518514 + B3A SINE B2 2 198 0 5 1239 1284 102 11 0 chr12 85739138 85739315 -35518215 + B2_Mm1t SINE B2 1 179 -14 5 1239 327 109 0 18 chr12 85739362 85739418 -35518112 + B2_Mm2 SINE B2 47 101 -94 5 1239 441 0 0 0 chr12 85739436 85739485 -35518045 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 5 1239 453 203 0 121 chr12 85739593 85739733 -35517797 - MER20 DNA MER1_type -61 158 36 5 1239 373 276 10 0 chr12 85740393 85740491 -35517039 - PB1D9 SINE Alu -21 99 1 5 1239 694 138 48 8 chr12 85742081 85742205 -35515325 - B1_Mur3 SINE Alu -11 138 10 5 1239 816 177 66 12 chr12 85742246 85742412 -35515118 + B2_Mm1t SINE B2 1 175 -18 5 1239 1693 21 0 0 chr12 85742415 85742603 -35514927 - B2_Mm1t SINE B2 -4 189 2 5 1239 26 0 0 0 chr12 85742611 85742637 -35514893 + AT_rich Low_complexity Low_complexity 1 26 0 6 1239 340 285 50 14 chr12 85742643 85742782 -35514748 + B1F SINE Alu 5 148 -1 6 1239 1185 62 0 0 chr12 85742817 85742961 -35514569 + B1_Mus1 SINE Alu 3 146 -2 6 1239 458 263 116 40 chr12 85742969 85743167 -35514363 - B3 SINE B2 -3 213 1 6 1239 1642 26 5 15 chr12 85745114 85745309 -35512221 + B2_Mm1t SINE B2 1 193 0 6 1239 243 0 0 0 chr12 85745359 85745386 -35512144 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1239 1695 26 0 0 chr12 85745386 85745578 -35511952 - B2_Mm1a SINE B2 0 193 2 6 1239 646 98 0 0 chr12 85745913 85746005 -35511525 + B1_Mus2 SINE Alu 53 144 -3 6 1239 198 0 0 0 chr12 85746006 85746028 -35511502 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 6 1239 435 258 82 44 chr12 85746773 85746931 -35510599 + RSINE1 SINE B4 2 165 0 6 1239 827 176 22 33 chr12 85746965 85747147 -35510383 - Lx9 LINE L1 -220 7424 7245 6 1239 379 186 25 94 chr12 85747145 85747233 -35510297 + Lx9 LINE L1 7420 7495 -149 6 1239 222 37 0 0 chr12 85747233 85747260 -35510270 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1239 379 186 25 94 chr12 85747260 85747331 -35510199 + Lx9 LINE L1 7496 7568 -76 6 1239 26 0 0 0 chr12 85747430 85747456 -35510074 + AT_rich Low_complexity Low_complexity 1 26 0 6 1239 31 0 0 0 chr12 85747527 85747558 -35509972 + AT_rich Low_complexity Low_complexity 1 31 0 6 1239 834 135 28 14 chr12 85747581 85747724 -35509806 + B1_Mur4 SINE Alu 2 146 -4 6 1239 402 294 46 33 chr12 85747835 85747854 -35509676 + ID_B1 SINE B4 70 222 -2 6 1239 613 204 53 0 chr12 85747854 85747986 -35509544 + B1_Mur2 SINE Alu 9 147 -2 6 1239 754 153 78 35 chr12 85748006 85748148 -35509382 + B1_Mur4 SINE Alu 3 150 0 6 1239 360 271 10 0 chr12 85748194 85748290 -35509240 + PB1D9 SINE Alu 18 114 -6 6 1239 1001 177 81 0 chr12 85748299 85748497 -35509033 + B3 SINE B2 2 215 -1 6 1239 201 74 0 0 chr12 85748620 85748647 -35508883 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1239 21 57 0 0 chr12 85749918 85749953 -35507577 + GC_rich Low_complexity Low_complexity 1 35 0 6 1239 236 301 0 14 chr12 85750140 85750214 -35507316 + A-rich Low_complexity Low_complexity 2 74 0 6 1239 260 250 136 0 chr12 85750699 85750787 -35506743 + PB1D10 SINE Alu 12 111 -6 6 1239 244 200 133 0 chr12 85750792 85750852 -35506678 + ID4_ SINE ID 5 72 -11 6 1239 1173 85 66 33 chr12 85750872 85751055 -35506475 - B2_Mm2 SINE B2 -5 190 2 6 1239 292 161 36 0 chr12 85751614 85751670 -35505860 + ID4 SINE ID 24 81 -2 6 1239 24 32 0 0 chr12 85751857 85751888 -35505642 + AT_rich Low_complexity Low_complexity 1 31 0 6 1239 225 0 0 0 chr12 85752273 85752298 -35505232 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 1239 1169 75 0 0 chr12 85752307 85752453 -35505077 - B1_Mus2 SINE Alu 0 147 2 6 1239 962 63 14 34 chr12 85752658 85752806 -35504724 + B1_Mur4 SINE Alu 6 150 0 6 1239 409 237 166 24 chr12 85752813 85752984 -35504546 + B3A SINE B2 37 209 -7 6 1239 976 99 0 0 chr12 85753008 85753150 -35504380 + B2_Mm2 SINE B2 2 143 -52 6 1239 186 71 0 0 chr12 85753151 85753179 -35504351 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 6 1239 630 188 55 0 chr12 85753232 85753360 -35504170 + B1_Mur3 SINE Alu 2 136 -13 6 1239 707 273 157 29 chr12 85753419 85753732 -35503798 + L1MB2 LINE L1 5795 6147 -24 6 1239 315 0 0 0 chr12 85753733 85753768 -35503762 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1239 745 236 25 6 chr12 85753768 85753930 -35503600 - B3 SINE B2 -51 165 1 6 1239 384 77 0 0 chr12 85753944 85753996 -35503534 + (CAA)n Simple_repeat Simple_repeat 3 54 0 6 1239 339 262 10 0 chr12 85754385 85754488 -35503042 + BC1_Mm scRNA scRNA 14 117 -35 6 1239 224 218 164 0 chr12 85754680 85754735 -35502795 - ID2 SINE ID -6 77 14 6 1239 249 323 30 10 chr12 85754722 85754741 -35502789 + B4A SINE B4 66 86 -206 6 1239 517 216 10 0 chr12 85754741 85754838 -35502692 + B1F SINE Alu 1 98 -51 6 1239 207 0 0 0 chr12 85754902 85754925 -35502605 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1239 804 59 188 14 chr12 85754925 85755063 -35502467 - B2_Mm1a SINE B2 -30 163 2 6 1239 599 235 65 13 chr12 85755710 85755865 -35501665 - B3 SINE B2 0 216 54 6 1239 230 150 0 0 chr12 85755839 85755879 -35501651 - PB1D9 SINE Alu -79 41 2 6 1239 539 236 40 24 chr12 85755942 85756068 -35501462 - RSINE1 SINE B4 -34 131 4 6 1239 280 338 46 40 chr12 85756402 85756553 -35500977 - MLT1F1 LTR MaLR -232 316 165 6 1239 324 0 0 0 chr12 85756558 85756594 -35500936 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1239 708 137 0 0 chr12 85756594 85756733 -35500797 + (GA)n Simple_repeat Simple_repeat 2 140 0 6 1239 252 0 0 0 chr12 85756733 85756761 -35500769 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1239 465 295 34 0 chr12 85756816 85756965 -35500565 - MLT1F1 LTR MaLR -411 158 5 6 1239 274 296 12 0 chr12 85757071 85757152 -35500378 - B1F SINE Alu -62 87 6 6 1239 702 252 19 85 chr12 85757186 85757398 -35500132 - B3A SINE B2 0 198 1 6 1239 373 202 90 0 chr12 85757408 85757497 -35500033 - PB1D7 SINE Alu -5 115 19 6 1239 300 247 0 24 chr12 85757689 85757772 -35499758 - ID4_ SINE ID 0 83 3 6 1239 288 0 0 0 chr12 85758080 85758112 -35499418 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1239 258 308 47 82 chr12 85759869 85760039 -35497491 - RSINE1 SINE B4 0 165 2 6 1239 297 336 50 0 chr12 85760042 85760182 -35497348 - B1F SINE Alu -1 148 2 6 1239 306 242 45 0 chr12 85760214 85760280 -35497250 - RSINE1 SINE B4 -29 136 68 6 1239 1716 162 25 19 chr12 85761029 85761349 -35496181 + Lx4A LINE L1 6736 7057 -1 6 1239 424 266 23 15 chr12 85761519 85761649 -35495881 + ID_B1 SINE B4 94 224 0 6 1239 180 111 0 0 chr12 85761649 85761676 -35495854 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 6 1239 1208 55 0 0 chr12 85761800 85761946 -35495584 + B1_Mus2 SINE Alu 2 147 0 6 1239 1681 31 0 0 chr12 85762192 85762384 -35495146 + B2_Mm1a SINE B2 2 193 0 6 1239 1403 184 189 9 chr12 85762491 85762841 -35494689 + MTC LTR MaLR 1 413 -8 6 1239 309 250 0 0 chr12 85762924 85762988 -35494542 - ID4_ SINE ID -3 80 17 6 1239 730 249 51 23 chr12 85763000 85763214 -35494316 - L1MA6 LINE L1 -351 5949 5730 6 1239 22 0 0 0 chr12 85763296 85763318 -35494212 + AT_rich Low_complexity Low_complexity 1 22 0 6 1239 688 181 7 55 chr12 85763322 85763468 -35494062 - B1F2 SINE Alu -6 143 5 6 1239 1233 207 118 9 chr12 85763585 85763916 -35493614 - MTD LTR MaLR 0 419 53 6 1239 674 167 0 8 chr12 85763908 85764029 -35493501 - B3 SINE B2 -96 120 1 6 1239 615 233 50 69 chr12 85764109 85764268 -35493262 - B3 SINE B2 -6 210 42 6 1239 793 214 25 6 chr12 85764705 85764865 -35492665 - RSINE1 SINE B4 -1 164 2 6 1239 333 318 0 26 chr12 85764920 85765033 -35492497 + PB1D10 SINE Alu 3 112 -5 6 1239 458 281 37 7 chr12 85765313 85765449 -35492081 - B1F1 SINE Alu 0 149 10 6 1239 226 300 62 12 chr12 85765381 85765462 -35492068 - B4A SINE B4 -126 166 82 6 1239 400 250 0 0 chr12 85765664 85765736 -35491794 - ID4_ SINE ID -9 74 3 6 1239 218 298 48 87 chr12 85765795 85765809 -35491721 + B4 SINE B4 70 79 -213 6 1239 332 203 50 97 chr12 85765809 85765914 -35491616 + PB1D9 SINE Alu 1 111 -9 6 1239 537 58 0 0 chr12 85766005 85766074 -35491456 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1239 1102 52 20 0 chr12 85766247 85766400 -35491130 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 6 1239 738 163 353 0 chr12 85766784 85766937 -35490593 - B3 SINE B2 -6 210 4 6 1239 682 172 14 36 chr12 85767127 85767266 -35490264 + B1_Mus2 SINE Alu 6 141 -6 6 1239 1225 41 0 0 chr12 85768421 85768567 -35488963 + B1_Mus1 SINE Alu 1 146 -2 6 1239 290 301 48 0 chr12 85769683 85769786 -35487744 - ID_B1 SINE B4 -1 223 116 6 1239 862 217 21 16 chr12 85773659 85773846 -35483684 + B3 SINE B2 2 189 -27 6 1239 334 215 10 41 chr12 85773967 85774064 -35483466 + ID_B1 SINE B4 129 222 -2 6 1239 237 306 14 0 chr12 85774088 85774160 -35483370 + B4A SINE B4 21 93 -199 6 1239 2047 135 111 14 chr12 85775372 85775816 -35481714 - RLTR31A_Mm LTR ERVK 0 584 1 6 1239 1029 108 227 0 chr12 85776218 85776394 -35481136 - B3 SINE B2 0 216 1 6 1239 527 251 187 51 chr12 85776410 85776645 -35480885 + Cheshire DNA MER1_type 13 279 -2141 6 1239 1601 220 70 20 chr12 85776687 85777086 -35480444 + MTD LTR MaLR 1 419 0 6 1239 236 258 30 0 chr12 85778057 85778123 -35479407 - B1F SINE Alu -5 144 77 6 1239 207 0 0 0 chr12 85778432 85778455 -35479075 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1239 754 146 49 0 chr12 85778455 85778578 -35478952 - B1_Mus2 SINE Alu -8 139 11 6 1239 711 191 28 28 chr12 85779196 85779341 -35478189 - B1_Mur1 SINE Alu -1 148 4 6 1239 341 265 110 68 chr12 85779445 85779591 -35477939 - RSINE1 SINE B4 -2 163 12 6 1239 294 270 80 0 chr12 85779820 85779920 -35477610 + MIR SINE MIR 85 192 -70 6 1239 726 249 5 63 chr12 85780102 85780308 -35477222 + B3A SINE B2 2 195 -3 6 1239 475 218 144 8 chr12 85780934 85781059 -35476471 + B1F1 SINE Alu 2 143 -6 7 1239 614 224 52 0 chr12 85781349 85781483 -35476047 - B1F SINE Alu -8 141 1 7 1239 658 101 0 35 chr12 85781509 85781635 -35475895 + ORR1B1 LTR MaLR 1 150 -244 7 1239 903 112 96 56 chr12 85781636 85781759 -35475771 - Lx LINE L1 0 6654 6519 7 1239 216 0 0 0 chr12 85781759 85781783 -35475747 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 7 1239 903 112 96 56 chr12 85781783 85781857 -35475673 - Lx LINE L1 -136 6518 6449 7 1239 1210 121 42 51 chr12 85781878 85782034 -35475496 + ORR1A4 LTR MaLR 93 251 -78 7 1239 3073 76 10 0 chr12 85782034 85782430 -35475100 + MTB LTR MaLR 1 400 0 7 1239 1210 121 42 51 chr12 85782430 85782509 -35475021 + ORR1A4 LTR MaLR 252 326 -3 7 1239 199 29 86 0 chr12 85783127 85783162 -35474368 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 7 1239 225 214 152 10 chr12 85783370 85783469 -35474061 + L1M5 LINE L1 5713 5825 -299 7 1239 687 325 27 63 chr12 85783565 85783897 -35473633 + RLTR18 LTR ERVK 1 320 -296 7 1239 626 336 38 57 chr12 85783945 85784261 -35473269 + RLTR18B LTR ERVK 193 502 -10 7 1239 358 187 105 23 chr12 85784266 85784393 -35473137 + B1_Mur2 SINE Alu 6 149 0 7 1239 780 126 272 12 chr12 85784396 85784565 -35472965 + B3 SINE B2 1 213 -3 7 1239 586 248 22 8 chr12 85784766 85784900 -35472630 + B1_Mur1 SINE Alu 2 137 -12 7 1239 1280 129 5 20 chr12 85784907 85785105 -35472425 - B2_Mm2 SINE B2 0 195 1 7 1239 463 206 135 0 chr12 85785249 85785375 -35472155 - B1F1 SINE Alu 0 149 7 7 1239 180 0 0 0 chr12 85785397 85785417 -35472113 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 7 1239 603 197 70 8 chr12 85785417 85785545 -35471985 - B1_Mur2 SINE Alu -12 137 2 7 1239 357 217 29 0 chr12 85785621 85785690 -35471840 - ID4 SINE ID -9 74 4 7 1239 694 232 7 7 chr12 85785728 85785871 -35471659 + B1_Mur1 SINE Alu 2 144 -5 7 1239 294 282 24 10 chr12 85786172 85786286 -35471244 + L1M5 LINE L1 5657 5774 -405 7 1239 1233 121 88 46 chr12 85788843 85789059 -35468471 - URR1A DNA MER1_type -1 225 1 7 1239 315 0 0 0 chr12 85789781 85789816 -35467714 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1239 714 266 26 15 chr12 85789877 85790072 -35467458 - B3A SINE B2 0 198 2 7 1239 225 338 65 0 chr12 85790246 85790323 -35467207 - PB1 SINE Alu -33 94 13 7 1239 22 0 0 0 chr12 85790555 85790577 -35466953 + AT_rich Low_complexity Low_complexity 1 22 0 7 1239 1273 34 0 0 chr12 85793409 85793557 -35463973 - B1_Mus1 SINE Alu 0 148 1 7 1239 257 271 89 9 chr12 85793623 85793733 -35463797 + B1F1 SINE Alu 1 118 -31 7 1239 651 138 121 8 chr12 85793775 85793899 -35463631 - B1_Mus2 SINE Alu 0 147 10 7 1239 785 208 28 22 chr12 85793948 85794130 -35463400 + B2_Mm2 SINE B2 3 185 -10 7 1239 689 229 139 6 chr12 85794146 85794326 -35463204 + B3 SINE B2 1 204 -12 7 1239 396 230 53 0 chr12 85794482 85794595 -35462935 - PB1D7 SINE Alu 0 120 2 7 1239 247 25 24 24 chr12 85794645 85794686 -35462844 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 7 1239 347 212 201 79 chr12 85795564 85795728 -35461802 + B4 SINE B4 5 188 -104 7 1239 811 174 21 0 chr12 85796031 85796175 -35461355 - B1_Mur4 SINE Alu -2 148 2 7 1239 390 195 126 0 chr12 85796419 85796506 -35461024 - PB1D7 SINE Alu -18 102 5 7 1239 453 224 291 0 chr12 85796530 85796678 -35460852 - B3 SINE B2 -11 205 15 7 1239 419 186 0 34 chr12 85796699 85796744 -35460786 + T-rich Low_complexity Low_complexity 69 113 0 7 1239 1160 68 0 0 chr12 85796744 85796891 -35460639 - B1_Mm SINE Alu 0 147 1 7 1239 419 186 0 34 chr12 85796891 85796962 -35460568 + T-rich Low_complexity Low_complexity 1 68 0 7 1239 523 250 31 15 chr12 85798020 85798150 -35459380 - RSINE1 SINE B4 -18 147 16 7 1239 260 279 15 0 chr12 85798322 85798390 -35459140 - ID4 SINE ID -13 70 2 7 1239 883 135 0 0 chr12 85798671 85798812 -35458718 - B1_Mur3 SINE Alu 0 149 9 7 1239 396 239 32 115 chr12 85798673 85798829 -35458701 - B4 SINE B4 -69 223 81 7 1239 368 279 9 46 chr12 85799261 85799370 -35458160 - RSINE1 SINE B4 -57 108 4 7 1239 231 36 0 0 chr12 85799370 85799398 -35458132 + (TGG)n Simple_repeat Simple_repeat 1 28 0 7 1239 1619 182 111 20 chr12 85799496 85799838 -35457692 - ORR1D1 LTR MaLR 0 374 2 7 1239 324 289 0 0 chr12 85800077 85800153 -35457377 + RSINE1 SINE B4 3 78 -87 7 1239 899 218 62 5 chr12 85800246 85800440 -35457090 - B3 SINE B2 -6 210 6 7 1239 536 205 126 0 chr12 85800692 85800819 -35456711 - B1_Mur4 SINE Alu -7 143 1 7 1239 246 295 116 0 chr12 85800822 85800934 -35456596 - PB1 SINE Alu -2 125 1 7 1239 26 30 0 0 chr12 85801114 85801147 -35456383 + AT_rich Low_complexity Low_complexity 1 33 0 7 1239 1218 154 87 0 chr12 85801375 85801583 -35455947 + URR1A DNA MER1_type 1 226 0 7 1239 25 0 0 0 chr12 85801733 85801758 -35455772 + AT_rich Low_complexity Low_complexity 1 25 0 7 1239 433 298 92 0 chr12 85802551 85802692 -35454838 + RSINE1 SINE B4 3 156 -9 7 1239 2337 24 0 0 chr12 85802847 85803135 -35454395 - MTA_Mm LTR MaLR 0 396 109 7 1239 230 333 16 40 chr12 85803586 85803711 -35453819 - MLT1K LTR MaLR -43 552 431 7 1239 360 179 0 0 chr12 85804095 85804151 -35453379 + RSINE1 SINE B4 10 65 -100 7 1239 399 21 0 0 chr12 85804156 85804204 -35453326 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1239 382 330 19 0 chr12 85804299 85804405 -35453125 + PB1D9 SINE Alu 6 113 -7 7 1239 488 211 17 34 chr12 85804525 85804643 -35452887 + PB1D10 SINE Alu 1 116 -1 7 1239 596 196 34 25 chr12 85805814 85805954 -35451576 + B1F SINE Alu 2 142 -5 7 1239 239 270 214 0 chr12 85805970 85806059 -35451471 - PB1 SINE Alu -19 108 1 7 1239 427 242 108 85 chr12 85806063 85806451 -35451079 - L1MC5 LINE L1 -294 7667 7271 7 1239 430 284 96 48 chr12 85806557 85806638 -35450892 - L1MC5 LINE L1 -734 7227 7146 7 1239 1324 40 102 11 chr12 85806638 85806815 -35450715 - B2_Mm1a SINE B2 0 193 1 7 1239 430 284 96 48 chr12 85806815 85806962 -35450568 - L1MC5 LINE L1 -816 7145 6988 7 1239 31 44 0 0 chr12 85807033 85807078 -35450452 + AT_rich Low_complexity Low_complexity 1 45 0 7 1239 583 141 114 16 chr12 85807089 85807212 -35450318 + B1_Mm SINE Alu 13 147 0 7 1239 198 0 0 0 chr12 85807412 85807434 -35450096 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 7 1239 397 231 56 28 chr12 85807461 85807568 -35449962 - RSINE1 SINE B4 -43 122 13 7 1239 593 228 0 0 chr12 85807651 85807778 -35449752 - B1_Mur4 SINE Alu -11 139 13 7 1239 431 48 16 0 chr12 85808838 85808900 -35448630 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1239 409 299 39 9 chr12 85808900 85809037 -35448493 - L1M4 LINE L1 -1998 4148 3995 7 1239 431 323 26 41 chr12 85809158 85809352 -35448178 - B3A SINE B2 -6 192 2 7 1239 399 297 0 19 chr12 85809538 85809641 -35447889 - PB1D7 SINE Alu -8 112 12 7 1239 439 97 316 9 chr12 85809956 85810070 -35447460 - B2_Mm2 SINE B2 0 195 47 7 1239 209 233 0 0 chr12 85810140 85810183 -35447347 + T-rich Low_complexity Low_complexity 1 43 0 7 1239 22 0 0 0 chr12 85810488 85810510 -35447020 + AT_rich Low_complexity Low_complexity 1 22 0 7 1239 239 79 26 0 chr12 85810602 85810640 -35446890 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 7 1239 252 307 92 61 chr12 85810846 85810945 -35446585 + MER117 DNA MER1_type 1 106 -91 7 1239 1207 93 70 0 chr12 85810945 85811117 -35446413 - B2_Mm2 SINE B2 -11 184 1 7 1239 252 307 92 61 chr12 85811117 85811180 -35446350 + MER117 DNA MER1_type 107 168 -29 7 1239 405 194 0 0 chr12 85811240 85811312 -35446218 + B1_Mur3 SINE Alu 62 133 -16 7 1239 333 306 154 15 chr12 85811346 85811482 -35446048 + B4A SINE B4 6 160 -132 7 1239 320 143 182 0 chr12 85811546 85811623 -35445907 - RMER4A LTR ERVK 0 466 376 7 1239 317 148 19 0 chr12 85811621 85811675 -35445855 - B2_Mm1t SINE B2 -138 55 1 7 1239 351 106 0 108 chr12 85811675 85811749 -35445781 - RMER4A LTR ERVK -400 66 1 7 1239 350 53 0 35 chr12 85812150 85812208 -35445322 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 7 1239 815 111 0 0 chr12 85812208 85812334 -35445196 - B1_Mur4 SINE Alu -13 137 12 7 1239 639 255 83 20 chr12 85812591 85812795 -35444735 - ID_B1 SINE B4 0 224 8 7 1239 361 319 103 28 chr12 85814197 85814342 -35443188 + RSINE1 SINE B4 4 159 -6 7 1239 21 0 0 0 chr12 85814396 85814417 -35443113 + AT_rich Low_complexity Low_complexity 1 21 0 7 1239 1232 41 0 7 chr12 85814417 85814565 -35442965 - B1_Mus2 SINE Alu 0 147 1 7 1239 579 182 60 15 chr12 85814575 85814709 -35442821 - B1_Mur1 SINE Alu -8 141 2 7 1239 29 0 0 0 chr12 85814711 85814740 -35442790 + AT_rich Low_complexity Low_complexity 1 29 0 7 1239 643 221 78 44 chr12 85815239 85815419 -35442111 + B3A SINE B2 2 187 -11 7 1239 180 0 0 0 chr12 85815465 85815485 -35442045 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1239 751 130 16 0 chr12 85815485 85815608 -35441922 - B1_Mus1 SINE Alu -8 140 16 7 1239 572 260 187 61 chr12 85816423 85816669 -35440861 + B4 SINE B4 2 278 -14 7 1239 635 278 41 50 chr12 85816676 85816896 -35440634 + ID_B1 SINE B4 1 218 -6 7 1239 1968 173 15 34 chr12 85817014 85817421 -35440109 + MTB_Mm LTR MaLR 1 399 -8 7 1239 292 234 211 18 chr12 85817447 85817556 -35439974 + B1F1 SINE Alu 15 144 -5 7 1239 428 195 22 22 chr12 85817471 85817560 -35439970 + ID_B1 SINE B4 135 223 -1 7 1239 3376 25 5 15 chr12 85817788 85818188 -35439342 + MTA_Mm LTR MaLR 1 396 0 8 1239 8689 58 7 3 chr12 85818188 85819281 -35438249 + MTA_Mm-int LTR MaLR 1 1098 0 8 1239 2845 27 8 16 chr12 85819281 85819663 -35437867 + MTA_Mm LTR MaLR 1 379 -17 8 1239 276 189 163 31 chr12 85819988 85820086 -35437444 + L1MEc LINE L1 200 310 -6090 8 1239 299 250 71 0 chr12 85820423 85820507 -35437023 - PB1D10 SINE Alu -6 111 22 8 1239 288 258 75 38 chr12 85820649 85820782 -35436748 - B4A SINE B4 -9 283 146 8 1239 822 253 1 12 chr12 85821122 85821328 -35436202 - B3 SINE B2 -7 188 5 8 1239 817 126 79 0 chr12 85821803 85821930 -35435600 + B1_Mus1 SINE Alu 1 137 -11 8 1239 438 69 0 0 chr12 85821948 85822006 -35435524 + (GA)n Simple_repeat Simple_repeat 2 59 0 8 1239 203 156 0 0 chr12 85822008 85822040 -35435490 + GA-rich Low_complexity Low_complexity 4 35 0 8 1239 241 217 16 16 chr12 85822209 85822270 -35435260 - L1M3 LINE L1 -413 5755 5695 8 1239 754 251 61 24 chr12 85822316 85822528 -35435002 + ID_B1 SINE B4 1 220 -4 8 1239 214 324 53 13 chr12 85822537 85822612 -35434918 - MIR SINE MIR -93 115 38 8 1239 515 261 36 43 chr12 85824836 85824976 -35432554 + B1_Mur1 SINE Alu 6 144 -5 8 1239 566 164 171 8 chr12 85825501 85825624 -35431906 + B1F SINE Alu 2 144 -5 8 1239 704 243 40 0 chr12 85826576 85826753 -35430777 - Lx9 LINE L1 -172 7472 7289 8 1239 509 127 107 10 chr12 85827377 85827480 -35430050 + B1_Mur4 SINE Alu 18 130 -20 8 1239 258 233 0 0 chr12 85829506 85829566 -35427964 - Lx2A LINE L1 -2046 5836 5747 8 1239 303 277 164 21 chr12 85830441 85830581 -35426949 - MER3 DNA MER1_type 0 209 50 8 1239 227 103 0 49 chr12 85830625 85830666 -35426864 + MER58C DNA MER1_type 62 100 -115 8 1239 301 229 16 0 chr12 85832475 85832536 -35424994 + ID SINE ID 7 68 -156 8 1239 480 260 62 16 chr12 85832989 85833118 -35424412 - RSINE1 SINE B4 -27 138 4 8 1239 180 97 0 0 chr12 85833118 85833149 -35424381 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1239 933 68 114 0 chr12 85833178 85833310 -35424220 + B1_Mus1 SINE Alu 1 147 -1 8 1239 324 277 130 29 chr12 85833335 85833543 -35423987 + L1MB2 LINE L1 5943 6171 0 8 1239 1746 16 0 0 chr12 85833551 85833744 -35423786 + B2_Mm1a SINE B2 1 193 0 8 1239 385 251 37 66 chr12 85835402 85835551 -35421979 + B1F SINE Alu 1 148 -1 8 1239 442 244 0 34 chr12 85835559 85835678 -35421852 + PB1D7 SINE Alu 6 120 0 8 1239 310 136 30 15 chr12 85835942 85836009 -35421521 + C-rich Low_complexity Low_complexity 3 70 0 8 1239 320 292 41 55 chr12 85836222 85836367 -35421163 + L1M5 LINE L1 5541 5683 -490 8 1239 366 304 36 22 chr12 85836473 85836611 -35420919 + B3A SINE B2 40 179 -19 8 1239 24 53 0 0 chr12 85836629 85836667 -35420863 + AT_rich Low_complexity Low_complexity 1 38 0 8 1239 180 0 0 0 chr12 85836742 85836762 -35420768 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1239 594 178 9 0 chr12 85837240 85837347 -35420183 - PB1D9 SINE Alu 0 120 13 8 1239 255 257 0 108 chr12 85837273 85837356 -35420174 - MT2B LTR ERVL -360 241 168 8 1239 242 295 10 40 chr12 85837276 85837375 -35420155 - B4A SINE B4 -124 168 73 8 1239 1181 65 106 0 chr12 85837379 85837549 -35419981 - B2_Mm2 SINE B2 -6 189 2 8 1239 369 230 0 0 chr12 85838074 85838148 -35419382 - B3 SINE B2 -7 209 136 8 1239 365 204 269 0 chr12 85838332 85838440 -35419090 + B3 SINE B2 2 138 -78 8 1239 501 219 60 26 chr12 85838437 85838554 -35418976 + RSINE1 SINE B4 5 125 -40 8 1239 204 135 0 26 chr12 85838558 85838596 -35418934 + CT-rich Low_complexity Low_complexity 2 38 0 8 1239 552 100 0 0 chr12 85838597 85838677 -35418853 + (CA)n Simple_repeat Simple_repeat 1 80 0 8 1239 757 275 30 0 chr12 85838726 85838926 -35418604 + B3 SINE B2 1 206 -10 8 1239 22 56 0 0 chr12 85839574 85839610 -35417920 + AT_rich Low_complexity Low_complexity 1 36 0 8 1239 311 328 22 44 chr12 85839825 85839962 -35417568 + RSINE1 SINE B4 4 137 -28 8 1239 820 143 7 22 chr12 85840014 85840150 -35417380 + B1_Mur4 SINE Alu 1 134 -16 8 1239 1286 75 40 0 chr12 85840233 85840407 -35417123 - B2_Mm2 SINE B2 -14 181 1 8 1239 1501 164 122 34 chr12 85840441 85840795 -35416735 - Lx5 LINE L1 -846 6204 5820 8 1239 228 100 0 0 chr12 85840804 85840844 -35416686 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 8 1239 225 0 0 0 chr12 85841476 85841501 -35416029 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1239 189 74 0 0 chr12 85842799 85842826 -35414704 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1239 653 242 19 6 chr12 85842842 85843004 -35414526 - B3A SINE B2 -33 165 2 8 1239 22 35 0 0 chr12 85843018 85843047 -35414483 + AT_rich Low_complexity Low_complexity 1 29 0 8 1239 435 264 54 8 chr12 85843047 85843177 -35414353 - RSINE1 SINE B4 -29 136 1 8 1239 636 206 21 42 chr12 85843609 85843751 -35413779 - B1_Mur1 SINE Alu -9 140 2 8 1239 993 184 31 36 chr12 85843888 85844113 -35413417 - Lx7 LINE L1 0 7696 7473 8 1239 455 339 93 30 chr12 85844325 85844659 -35412871 - MLT1L LTR MaLR -186 424 70 8 1239 311 251 355 35 chr12 85844668 85844837 -35412693 + ID_B1 SINE B4 1 223 -1 8 1239 360 257 17 52 chr12 85844864 85844979 -35412551 + PB1D10 SINE Alu 7 117 0 8 1239 1142 202 19 0 chr12 85844997 85845205 -35412325 + B3 SINE B2 3 214 -2 8 1239 854 136 49 14 chr12 85845304 85845446 -35412084 - B1_Mus2 SINE Alu 0 147 1 8 1239 409 194 122 188 chr12 85845479 85845708 -35411822 - B3 SINE B2 -1 215 2 8 1239 819 273 17 60 chr12 85846794 85847028 -35410502 + B4A SINE B4 6 229 -63 8 1239 507 288 14 48 chr12 85848045 85848191 -35409339 + RSINE1 SINE B4 23 163 -2 8 1239 229 281 152 70 chr12 85848631 85848887 -35408643 + HAL1 LINE L1 2227 2503 -4 8 1239 569 211 0 0 chr12 85848911 85849025 -35408505 + B1_Mur1 SINE Alu 29 142 -7 8 1239 207 161 0 0 chr12 85850000 85850056 -35407474 + T-rich Low_complexity Low_complexity 1 56 0 8 1239 1222 35 7 0 chr12 85850058 85850202 -35407328 - B1_Mm SINE Alu -1 146 2 8 1239 1496 54 21 0 chr12 85850249 85850435 -35407095 + B2_Mm2 SINE B2 1 190 -5 8 1239 1200 48 0 7 chr12 85850561 85850709 -35406821 - B1_Mm SINE Alu 0 147 1 8 1239 1479 76 5 0 chr12 85850903 85851088 -35406442 + B2_Mm1t SINE B2 1 186 -7 8 1239 364 326 35 21 chr12 85851168 85851309 -35406221 + B1_Mur1 SINE Alu 1 143 -6 8 1239 533 226 186 0 chr12 85851940 85852117 -35405413 - B3 SINE B2 -4 212 3 8 1240 182 264 185 11 chr12 85853853 85853945 -35403585 + MIRb SINE MIR 39 146 -122 8 1240 257 0 30 0 chr12 85854452 85854485 -35403045 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 8 1240 900 221 53 103 chr12 85854538 85854622 -35402908 + MTD LTR MaLR 127 211 -208 8 1240 918 229 9 74 chr12 85854622 85854853 -35402677 + B3 SINE B2 1 216 0 8 1240 900 221 53 103 chr12 85854853 85855050 -35402480 + MTD LTR MaLR 212 394 -25 8 1240 1892 135 81 40 chr12 85855055 85855426 -35402104 - ORR1B1 LTR MaLR -8 386 1 8 1240 660 268 121 66 chr12 85855551 85855820 -35401710 + L1M5 LINE L1 5320 5601 -563 8 1240 3386 41 0 12 chr12 85855820 85856239 -35401291 + L1Md_F2 LINE L1 6169 6582 0 8 1240 660 268 121 66 chr12 85856239 85856425 -35401105 + L1M5 LINE L1 5602 5800 -364 8 1240 892 192 109 0 chr12 85856435 85856628 -35400902 - MTD LTR MaLR -182 237 24 8 1240 634 226 36 12 chr12 85857663 85857829 -35399701 + B3 SINE B2 1 170 -46 8 1240 1815 172 92 22 chr12 85857846 85858214 -35399316 + MTD LTR MaLR 18 411 -8 8 1240 25 51 0 0 chr12 85858252 85858291 -35399239 + AT_rich Low_complexity Low_complexity 1 39 0 8 1240 864 137 20 40 chr12 85858413 85858565 -35398965 + B1_Mur4 SINE Alu 2 150 0 8 1240 26 0 0 0 chr12 85858579 85858605 -35398925 + AT_rich Low_complexity Low_complexity 1 26 0 8 1240 1009 66 0 0 chr12 85859337 85859473 -35398057 - B1_Mus2 SINE Alu 0 147 12 8 1240 450 0 0 0 chr12 85859600 85859650 -35397880 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1240 658 199 122 42 chr12 85860083 85860235 -35397295 + B3 SINE B2 11 182 -34 8 1240 186 43 0 0 chr12 85860235 85860258 -35397272 + (CATA)n Simple_repeat Simple_repeat 4 26 0 8 1240 658 199 122 42 chr12 85860258 85860294 -35397236 + B3 SINE B2 183 214 -2 8 1240 1442 66 16 11 chr12 85860470 85860655 -35396875 + B2_Mm2 SINE B2 2 187 -8 8 1240 477 92 0 0 chr12 85860846 85860922 -35396608 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1240 21 0 0 0 chr12 85861593 85861614 -35395916 + AT_rich Low_complexity Low_complexity 1 21 0 8 1240 461 205 50 86 chr12 85862437 85862576 -35394954 + ID_B1 SINE B4 86 219 -5 8 1240 431 224 140 0 chr12 85862597 85862704 -35394826 + ID_B1 SINE B4 94 215 -9 8 1240 21 0 0 0 chr12 85863749 85863770 -35393760 + AT_rich Low_complexity Low_complexity 1 21 0 8 1240 888 249 5 36 chr12 85864098 85864319 -35393211 + B3 SINE B2 1 214 -2 8 1240 1022 128 0 7 chr12 85864339 85864489 -35393041 + B1_Mur4 SINE Alu 2 150 0 8 1240 217 302 57 57 chr12 85864775 85864933 -35392597 - MIRb SINE MIR -110 158 1 8 1240 283 194 226 0 chr12 85866040 85866102 -35391428 - ID2 SINE ID -6 77 2 8 1240 1088 223 61 11 chr12 85866153 85866416 -35391114 - B4 SINE B4 -6 286 11 8 1240 504 143 0 0 chr12 85866708 85866792 -35390738 + (TG)n Simple_repeat Simple_repeat 2 85 0 8 1240 878 206 85 0 chr12 85867575 85867774 -35389756 + B3 SINE B2 1 216 0 9 1240 222 191 0 0 chr12 85868067 85868114 -35389416 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 9 1240 212 304 101 0 chr12 85868279 85868358 -35389172 - B4A SINE B4 -137 155 69 9 1240 214 143 24 0 chr12 85868352 85868394 -35389136 - ID SINE ID -181 43 1 9 1240 312 289 44 0 chr12 85868511 85868601 -35388929 + RSINE1 SINE B4 41 134 -31 9 1240 315 0 0 0 chr12 85868608 85868643 -35388887 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1240 206 128 26 0 chr12 85868645 85868684 -35388846 + GA-rich Low_complexity Low_complexity 1 40 0 9 1240 766 189 20 20 chr12 85868710 85868856 -35388674 + B1_Mur4 SINE Alu 3 148 -2 9 1240 299 231 0 60 chr12 85869245 85869328 -35388202 - ID SINE ID -142 82 5 9 1240 183 80 0 0 chr12 85869330 85869355 -35388175 + (CTTAT)n Simple_repeat Simple_repeat 1 25 0 9 1240 22 35 0 0 chr12 85870456 85870485 -35387045 + AT_rich Low_complexity Low_complexity 1 29 0 9 1240 411 21 0 0 chr12 85874113 85874161 -35383369 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1240 333 0 0 0 chr12 85875471 85875508 -35382022 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1240 479 212 45 0 chr12 85875575 85875690 -35381840 - B4A SINE B4 -135 157 33 9 1240 189 0 0 0 chr12 85876200 85876221 -35381309 + (G)n Simple_repeat Simple_repeat 1 21 0 9 1240 568 81 10 20 chr12 85876770 85876871 -35380659 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 9 1240 710 198 65 36 chr12 85877090 85877258 -35380272 + B3A SINE B2 10 182 -16 9 1240 203 125 0 24 chr12 85877504 85877545 -35379985 + (TCC)n Simple_repeat Simple_repeat 3 42 0 9 1240 340 318 52 26 chr12 85877548 85877703 -35379827 - ID_B1 SINE B4 -3 221 63 9 1240 363 225 0 111 chr12 85877833 85877848 -35379682 - ID_B1 SINE B4 0 224 107 9 1240 696 114 8 34 chr12 85877848 85877966 -35379564 - B1_Mur2 SINE Alu -9 140 26 9 1240 515 226 28 0 chr12 85877993 85878099 -35379431 + PB1D10 SINE Alu 1 109 -8 9 1240 4244 37 4 12 chr12 85878110 85878625 -35378905 + L1Md_F3 LINE L1 6073 6583 -1 9 1240 251 219 109 0 chr12 85878650 85878714 -35378816 + L1M5 LINE L1 5628 5698 -464 9 1240 891 64 16 0 chr12 85878714 85878839 -35378691 + B1_Mm SINE Alu 10 136 -11 9 1240 189 0 0 0 chr12 85879096 85879117 -35378413 + (G)n Simple_repeat Simple_repeat 1 21 0 9 1240 225 94 0 0 chr12 85879661 85879693 -35377837 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1240 436 319 56 39 chr12 85879706 85879990 -35377540 - B4A SINE B4 -1 291 3 9 1240 880 153 235 0 chr12 85880015 85880198 -35377332 + URR1A DNA MER1_type 1 226 0 9 1240 227 179 72 29 chr12 85880365 85880434 -35377096 - MER3 DNA MER1_type -17 192 121 9 1240 248 279 0 0 chr12 85880547 85880608 -35376922 + CT-rich Low_complexity Low_complexity 4 64 0 9 1240 347 241 156 35 chr12 85880608 85880748 -35376782 - B3A SINE B2 0 216 57 9 1240 1340 41 0 0 chr12 85880752 85880924 -35376606 + B2_Mm1a SINE B2 1 172 -21 9 1240 243 50 0 0 chr12 85880919 85880959 -35376571 + B2_Mm1t SINE B2 136 175 -18 9 1240 290 48 0 0 chr12 85880962 85881004 -35376526 + B2_Mm1t SINE B2 131 172 -21 9 1240 237 33 0 0 chr12 85881024 85881054 -35376476 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 9 1240 231 207 155 0 chr12 85881055 85881113 -35376417 - B3A SINE B2 -131 67 1 9 1240 198 0 0 0 chr12 85881115 85881137 -35376393 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1240 299 229 0 0 chr12 85881139 85881200 -35376330 - MER3 DNA MER1_type -102 107 47 9 1240 259 274 167 107 chr12 85881450 85881683 -35375847 - L1MC LINE L1 -2079 5803 5557 9 1240 419 222 121 83 chr12 85881898 85882055 -35375475 - RSINE1 SINE B4 0 165 3 9 1240 300 283 97 16 chr12 85882113 85882258 -35375272 - MIRb SINE MIR -78 190 32 9 1240 380 286 12 2 chr12 85883980 85884104 -35373426 - PB1D10 SINE Alu -6 141 17 9 1240 416 223 0 84 chr12 85884107 85884249 -35373281 + (CATA)n Simple_repeat Simple_repeat 3 132 0 9 1240 2488 126 52 5 chr12 85884307 85884714 -35372816 - Lx4A LINE L1 -1 7057 6632 9 1240 477 277 66 0 chr12 85884723 85884860 -35372670 - B1F SINE Alu -3 146 1 9 1240 248 221 29 0 chr12 85884887 85884955 -35372575 - B3 SINE B2 0 216 147 9 1240 320 272 0 0 chr12 85884968 85885049 -35372481 - B3 SINE B2 -127 89 9 9 1240 725 211 13 13 chr12 85885080 85885229 -35372301 - B1_Mur1 SINE Alu 0 149 1 9 1240 446 193 244 0 chr12 85885377 85885496 -35372034 + B1F1 SINE Alu 2 149 0 9 1240 533 273 72 50 chr12 85885516 85885723 -35371807 + B3A SINE B2 7 216 0 9 1240 460 267 188 32 chr12 85885940 85886126 -35371404 + ID_B1 SINE B4 4 218 -6 9 1240 778 167 27 20 chr12 85886172 85886319 -35371211 - B1_Mur2 SINE Alu -1 148 1 9 1240 296 226 83 19 chr12 85886369 85886477 -35371053 + L1MC3 LINE L1 7512 7626 -159 9 1240 198 0 0 0 chr12 85886712 85886734 -35370796 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1240 558 0 0 0 chr12 85887336 85887398 -35370132 + (ATATG)n Simple_repeat Simple_repeat 2 63 0 9 1240 1154 122 0 0 chr12 85888167 85888339 -35369191 + B2_Mm2 SINE B2 2 173 -22 9 1240 195 42 0 0 chr12 85888340 85888364 -35369166 + (GAA)n Simple_repeat Simple_repeat 1 24 0 9 1240 192 345 46 0 chr12 85888624 85888711 -35368819 + MIRb SINE MIR 142 232 -36 9 1240 222 257 5 53 chr12 85888869 85888952 -35368578 - MIRc SINE MIR -79 183 106 9 1240 379 176 0 51 chr12 85890177 85890255 -35367275 + RSINE1 SINE B4 4 77 -88 9 1240 207 0 0 0 chr12 85890298 85890321 -35367209 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9 1240 470 231 76 47 chr12 85890397 85890608 -35366922 + MIR SINE MIR 2 221 -47 9 1240 1407 59 16 0 chr12 85890714 85890900 -35366630 - B2_Mm2 SINE B2 -6 189 1 9 1240 672 240 7 0 chr12 85890919 85891065 -35366465 - B1F2 SINE Alu 0 149 3 9 1240 905 147 0 7 chr12 85891472 85891623 -35365907 + B1_Mur4 SINE Alu 1 150 0 9 1240 300 289 81 69 chr12 85891636 85891796 -35365734 - MER2 DNA MER2_type -85 260 99 9 1240 23 0 0 0 chr12 85892192 85892215 -35365315 + GC_rich Low_complexity Low_complexity 1 23 0 9 1240 425 204 34 11 chr12 85893693 85893782 -35363748 - B1F1 SINE Alu -56 93 3 9 1240 269 228 0 28 chr12 85893722 85893799 -35363731 - B4A SINE B4 -146 146 71 9 1240 383 260 100 0 chr12 85894941 85895041 -35362489 + PB1 SINE Alu 16 125 -2 9 1240 213 244 0 152 chr12 85895067 85895105 -35362425 + B4 SINE B4 7 37 -255 9 1240 939 146 37 11 chr12 85895105 85895292 -35362238 + B2_Mm2 SINE B2 3 194 -1 9 1240 561 220 0 27 chr12 85895292 85895404 -35362126 + RSINE1 SINE B4 33 141 -24 9 1240 709 71 200 17 chr12 85895429 85895544 -35361986 + B1_Mus1 SINE Alu 1 136 -12 9 1240 423 0 0 0 chr12 85895544 85895591 -35361939 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 9 1240 366 23 0 0 chr12 85895592 85895635 -35361895 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 9 1240 258 187 103 39 chr12 85895680 85895758 -35361772 - MIR SINE MIR -132 130 48 9 1240 680 144 35 28 chr12 85896039 85896182 -35361348 - B1_Mur4 SINE Alu -1 149 6 9 1240 333 0 0 0 chr12 85896465 85896502 -35361028 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 9 1240 654 212 22 14 chr12 85896502 85896631 -35360899 - B1_Mur3 SINE Alu -13 136 5 9 1240 720 243 17 17 chr12 85896911 85897068 -35360462 + MT2A LTR ERVL 42 199 -334 9 1240 249 33 0 0 chr12 85897068 85897098 -35360432 + (TC)n Simple_repeat Simple_repeat 2 31 0 9 1240 720 293 111 26 chr12 85897098 85897246 -35360284 + MT2A LTR ERVL 200 217 -316 9 1240 384 59 0 0 chr12 85897246 85897297 -35360233 + (TA)n Simple_repeat Simple_repeat 1 51 0 9 1240 234 0 0 0 chr12 85897297 85897322 -35360208 + (GA)n Simple_repeat Simple_repeat 2 27 0 9 1240 637 300 124 27 chr12 85897322 85897382 -35360148 + MT2A LTR ERVL 543 599 -2 9 1240 23 33 0 0 chr12 85897517 85897547 -35359983 + AT_rich Low_complexity Low_complexity 1 30 0 9 1240 1116 211 123 158 chr12 85897547 85897665 -35359865 - MT2A LTR ERVL -32 501 371 9 1240 1040 84 0 7 chr12 85897665 85897803 -35359727 + B1_Mus2 SINE Alu 1 138 -9 9 1240 186 71 0 0 chr12 85897803 85897831 -35359699 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 9 1240 1116 211 123 158 chr12 85897831 85898235 -35359295 - MT2A LTR ERVL -163 370 1 9 1240 262 233 14 0 chr12 85898452 85898525 -35359005 + ID4 SINE ID 1 74 -9 9 1240 394 300 14 21 chr12 85899287 85899430 -35358100 + MIR SINE MIR 113 254 -8 9 1240 269 247 52 31 chr12 85899487 85899583 -35357947 + CR1_Mam LINE CR1 1549 1646 -558 9 1240 333 222 0 0 chr12 85899709 85899772 -35357758 - MIRc SINE MIR -85 183 121 9 1240 333 216 32 64 chr12 85899767 85899861 -35357669 - MIRb SINE MIR -99 169 79 9 1240 251 28 28 0 chr12 85899947 85899983 -35357547 + (CAA)n Simple_repeat Simple_repeat 2 38 0 9 1240 783 177 0 26 chr12 85900649 85900662 -35356868 - B1_Mur2 SINE Alu -1 148 137 9 1240 243 0 0 0 chr12 85900662 85900689 -35356841 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1240 783 177 0 26 chr12 85900689 85900826 -35356704 - B1_Mur2 SINE Alu -13 136 2 9 1240 469 274 32 16 chr12 85900898 85901024 -35356506 - B1F SINE Alu -3 146 19 9 1240 985 144 160 0 chr12 85901075 85901256 -35356274 + B3 SINE B2 7 216 0 9 1240 730 178 1 3 chr12 85901265 85901406 -35356124 + B1_Mus1 SINE Alu 2 139 -9 9 1240 605 14 14 0 chr12 85901407 85901481 -35356049 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 9 1240 1128 62 7 0 chr12 85901509 85901655 -35355875 + B1_Mm SINE Alu 1 147 0 9 1240 706 200 14 54 chr12 85901724 85901872 -35355658 + B1F1 SINE Alu 2 143 -6 9 1240 1195 61 0 0 chr12 85901878 85902026 -35355504 + B1_Mus1 SINE Alu 1 148 0 1 1240 278 125 0 45 chr12 85902026 85902093 -35355437 + A-rich Low_complexity Low_complexity 1 64 0 1 1240 915 123 127 12 chr12 85902174 85902347 -35355183 + B2_Mm2 SINE B2 2 194 -1 1 1240 961 301 48 54 chr12 85902556 85902907 -35354623 + MTE2b LTR MaLR 3 351 -28 1 1240 900 188 0 0 chr12 85902941 85903090 -35354440 - B1_Mur3 SINE Alu 0 149 1 1 1240 266 146 0 20 chr12 85903090 85903130 -35354400 + MTE2b LTR MaLR 337 376 -3 1 1240 899 111 0 0 chr12 85903380 85903515 -35354015 + B1_Mus1 SINE Alu 9 143 -5 1 1240 1021 173 91 0 chr12 85903578 85903775 -35353755 + B3 SINE B2 1 215 -1 1 1240 247 329 12 0 chr12 85903863 85903948 -35353582 + BC1_Mm scRNA scRNA 2 87 -65 1 1240 924 210 15 20 chr12 85904545 85904749 -35352781 + B3 SINE B2 1 203 -13 1 1240 461 347 22 17 chr12 85904934 85905113 -35352417 - MIR SINE MIR -73 189 10 1 1240 352 248 53 39 chr12 85905166 85905289 -35352241 - B1F SINE Alu 0 127 3 1 1240 653 242 0 0 chr12 85905488 85905620 -35351910 - ID_B1 SINE B4 -10 214 83 1 1240 935 129 0 6 chr12 85906144 85906300 -35351230 + (TTTC)n Simple_repeat Simple_repeat 4 158 0 1 1240 1058 102 7 0 chr12 85906335 85906482 -35351048 - B1_Mus1 SINE Alu 0 148 1 1 1240 279 0 0 0 chr12 85906656 85906687 -35350843 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1240 1135 36 0 0 chr12 85906687 85906824 -35350706 - B1_Mm SINE Alu -10 137 1 1 1240 264 288 135 8 chr12 85906946 85906968 -35350562 + B1F1 SINE Alu 1 142 -7 1 1240 351 216 106 19 chr12 85906968 85907072 -35350458 + ID_B1 SINE B4 105 217 -7 1 1240 1326 64 26 16 chr12 85907509 85907699 -35349831 - B2_Mm2 SINE B2 -2 193 2 1 1240 820 238 24 28 chr12 85907764 85907976 -35349554 - MTE2a LTR MaLR -4 375 165 1 1240 672 250 33 44 chr12 85907971 85908021 -35349509 - B3 SINE B2 0 216 165 1 1240 459 0 0 0 chr12 85908021 85908072 -35349458 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1240 672 250 33 44 chr12 85908072 85908201 -35349329 - B3 SINE B2 -52 164 39 1 1240 407 279 92 35 chr12 85908175 85908316 -35349214 - MTE2a LTR MaLR -156 223 75 1 1240 550 281 52 12 chr12 85908316 85908489 -35349041 + B3A SINE B2 1 180 -18 1 1240 370 267 23 0 chr12 85908541 85908627 -35348903 - MTE2a LTR MaLR -291 88 1 1 1240 463 277 110 0 chr12 85908629 85908784 -35348746 - B4 SINE B4 -120 172 1 1 1240 628 237 14 7 chr12 85908797 85908937 -35348593 - ID_B1 SINE B4 -2 222 82 1 1240 890 125 7 7 chr12 85909199 85909344 -35348186 + B1_Mur4 SINE Alu 6 150 0 1 1240 212 135 0 71 chr12 85909344 85909400 -35348130 + A-rich Low_complexity Low_complexity 6 57 0 1 1240 320 289 24 0 chr12 85909970 85910053 -35347477 + PB1D10 SINE Alu 24 108 -9 1 1240 186 133 0 0 chr12 85912438 85912468 -35345062 + (TTC)n Simple_repeat Simple_repeat 1 30 0 1 1240 248 268 41 19 chr12 85913068 85913171 -35344359 + MIRc SINE MIR 57 160 -108 1 1240 280 277 78 10 chr12 85913243 85913345 -35344185 + B3 SINE B2 105 213 -3 1 1240 216 0 0 0 chr12 85913892 85913916 -35343614 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1240 412 198 30 97 chr12 85913997 85914131 -35343399 - RSINE1 SINE B4 -38 127 3 1 1240 801 82 0 0 chr12 85914904 85915014 -35342516 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 1 1240 462 114 0 0 chr12 85915381 85915451 -35342079 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1 1240 598 185 95 15 chr12 85915452 85915589 -35341941 - B1_Mur1 SINE Alu -1 148 1 1 1240 457 233 42 25 chr12 85916081 85916092 -35341438 - B1_Mur2 SINE Alu 0 149 139 1 1240 198 0 0 0 chr12 85916092 85916114 -35341416 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1240 457 233 42 25 chr12 85916114 85916221 -35341309 - B1_Mur2 SINE Alu -11 138 29 1 1240 240 272 0 90 chr12 85916143 85916232 -35341298 - MT2B LTR ERVL -344 257 177 1 1240 519 92 0 0 chr12 85916414 85916501 -35341029 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1240 1123 57 0 0 chr12 85916504 85916644 -35340886 - B1_Mus1 SINE Alu -7 141 2 1 1240 315 0 0 0 chr12 85917016 85917051 -35340479 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1240 366 136 0 0 chr12 85917051 85917132 -35340398 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1240 315 0 0 0 chr12 85917453 85917488 -35340042 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1240 228 314 0 14 chr12 85917615 85917686 -35339844 + ID4_ SINE ID 2 71 -12 1 1240 210 266 200 14 chr12 85919619 85919764 -35337766 - MIRc SINE MIR -65 203 32 1 1240 512 130 0 11 chr12 85919916 85920009 -35337521 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 1240 352 276 27 24 chr12 85920456 85920600 -35336930 - MIRb SINE MIR -11 251 102 1 1240 819 214 26 87 chr12 85921059 85921289 -35336241 - B3 SINE B2 0 216 1 1 1240 27 62 0 0 chr12 85921306 85921354 -35336176 + AT_rich Low_complexity Low_complexity 1 48 0 1 1240 333 293 177 7 chr12 85921433 85921574 -35335956 - B4A SINE B4 -22 270 106 1 1240 224 294 55 64 chr12 85921477 85921586 -35335944 - PB1D7 SINE Alu 0 120 13 1 1240 656 101 20 0 chr12 85921633 85921732 -35335798 - B1_Mur4 SINE Alu -1 149 49 1 1240 945 208 69 0 chr12 85921733 85921935 -35335595 - B3 SINE B2 0 216 1 1 1240 207 314 47 38 chr12 85922020 85922126 -35335404 - MER5B DNA MER1_type -69 109 3 1 1240 1326 76 27 0 chr12 85922165 85922349 -35335181 + B2_Mm2 SINE B2 3 191 -4 1 1240 698 173 88 47 chr12 85922470 85922493 -35335037 - B2_Mm2 SINE B2 -15 180 160 1 1240 333 0 0 0 chr12 85922493 85922530 -35335000 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1 1240 698 173 88 47 chr12 85922530 85922676 -35334854 - B2_Mm2 SINE B2 -36 159 4 1 1240 517 214 34 8 chr12 85922838 85922956 -35334574 + B1F2 SINE Alu 6 126 -23 1 1240 31 26 0 0 chr12 85922963 85923001 -35334529 + AT_rich Low_complexity Low_complexity 1 38 0 1 1240 908 137 7 14 chr12 85923006 85923154 -35334376 + B1_Mus1 SINE Alu 2 148 0 1 1240 21 0 0 0 chr12 85923161 85923182 -35334348 + AT_rich Low_complexity Low_complexity 1 21 0 1 1240 189 211 0 0 chr12 85923207 85923264 -35334266 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1240 702 244 62 38 chr12 85923472 85923620 -35333910 + ID_B1 SINE B4 2 162 -62 1 1240 4755 91 17 17 chr12 85923620 85924371 -35333159 - RMER17A LTR ERVK 0 751 1 1 1240 702 244 62 38 chr12 85924371 85924431 -35333099 + ID_B1 SINE B4 163 215 -9 1 1240 552 260 67 103 chr12 85924448 85924492 -35333038 + B3 SINE B2 1 42 -174 1 1240 799 158 0 0 chr12 85924492 85924625 -35332905 + B1_Mus1 SINE Alu 3 135 -13 1 1240 234 0 0 0 chr12 85924625 85924651 -35332879 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1240 552 260 67 103 chr12 85924651 85924828 -35332702 + B3 SINE B2 43 214 -2 1 1240 454 313 15 7 chr12 85924918 85925053 -35332477 + ID_B1 SINE B4 89 224 0 1 1240 193 278 181 0 chr12 85925328 85925400 -35332130 - MIRb SINE MIR -27 241 157 1 1240 1169 109 22 11 chr12 85925428 85925613 -35331917 + B2_Mm2 SINE B2 1 187 -8 1 1240 1170 107 0 0 chr12 85925613 85925790 -35331740 + (GAA)n Simple_repeat Simple_repeat 2 178 0 1 1240 1224 62 0 0 chr12 85925799 85925961 -35331569 + B2_Mm2 SINE B2 1 162 -33 1 1240 180 0 0 0 chr12 85925961 85925981 -35331549 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1240 282 143 0 0 chr12 85925992 85926041 -35331489 + (GGA)n Simple_repeat Simple_repeat 3 51 0 1 1240 1098 224 23 90 chr12 85926190 85926625 -35330905 - RLTR11B LTR ERVK -17 424 5 1 1240 616 270 19 78 chr12 85926750 85926955 -35330575 + B3A SINE B2 6 198 0 1 1240 317 259 43 43 chr12 85927215 85927332 -35330198 - MIRb SINE MIR -6 262 146 1 1240 414 286 34 13 chr12 85927452 85927601 -35329929 - MER2 DNA MER2_type -90 255 104 1 1240 757 264 96 5 chr12 85927601 85927810 -35329720 + B4A SINE B4 2 229 -63 1 1240 944 148 0 26 chr12 85927810 85927963 -35329567 + B1_Mur4 SINE Alu 2 150 0 1 1240 738 174 34 70 chr12 85928201 85928413 -35329117 - B2_Mm2 SINE B2 -1 215 2 1 1240 264 350 99 12 chr12 85928937 85929099 -35328431 + MER46C DNA MER2_type 5 180 -158 1 1240 547 285 77 71 chr12 85929159 85929328 -35328202 - ID_B1 SINE B4 -43 249 76 1 1240 560 209 115 8 chr12 85929359 85929489 -35328041 - B3A SINE B2 -45 153 10 1 1240 755 133 86 0 chr12 85929495 85929623 -35327907 + B1_Mur4 SINE Alu 5 143 -7 1 1240 1190 61 0 0 chr12 85929632 85929780 -35327750 + B1_Mus1 SINE Alu 1 148 0 1 1240 200 59 0 29 chr12 85929781 85929816 -35327714 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1240 702 211 42 0 chr12 85930537 85930679 -35326851 - B1_Mur1 SINE Alu 0 149 2 1 1240 24 32 0 0 chr12 85931230 85931261 -35326269 + GC_rich Low_complexity Low_complexity 1 31 0 1 1240 312 27 0 0 chr12 85931950 85931987 -35325543 + (ATG)n Simple_repeat Simple_repeat 1 37 0 1 1240 886 212 29 24 chr12 85932402 85932610 -35324920 - B3 SINE B2 -7 209 1 1 1240 1133 145 54 40 chr12 85935362 85935585 -35321945 - URR1A DNA MER1_type 0 226 1 1 1240 213 175 0 0 chr12 85935718 85935758 -35321772 + (CACG)n Simple_repeat Simple_repeat 2 41 0 1 1240 704 197 71 0 chr12 85936539 85936666 -35320864 + B1_Mur3 SINE Alu 2 137 -12 1 1240 876 133 0 0 chr12 85936668 85936811 -35320719 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 1 1240 315 295 39 168 chr12 85937120 85937202 -35320328 + B3A SINE B2 9 79 -119 1 1240 1086 134 37 5 chr12 85937202 85937372 -35320158 + B2_Mm2 SINE B2 1 177 -18 1 1240 918 69 69 0 chr12 85937372 85937502 -35320028 + B1_Mus2 SINE Alu 2 140 -7 1 1240 1086 134 37 5 chr12 85937502 85937518 -35320012 + B2_Mm2 SINE B2 178 193 -2 1 1240 315 295 39 168 chr12 85937518 85937614 -35319916 + B3A SINE B2 80 164 -34 1 1240 180 0 0 0 chr12 85938761 85938781 -35318749 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1 1240 218 273 61 0 chr12 85939088 85939154 -35318376 + B4A SINE B4 63 132 -160 1 1240 1179 163 170 68 chr12 85939678 85940001 -35317529 + ORR1D1 LTR MaLR 11 366 -8 1 1240 299 25 25 0 chr12 85940002 85940042 -35317488 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1240 476 121 143 0 chr12 85940047 85940138 -35317392 - PB1D9 SINE Alu -9 111 8 1 1240 778 179 21 0 chr12 85940344 85940484 -35317046 + B3A SINE B2 2 144 -54 1 1240 1299 90 16 5 chr12 85940705 85940895 -35316635 + B2_Mm2 SINE B2 2 193 -2 1 1240 1168 62 0 0 chr12 85940897 85941043 -35316487 + B1_Mus2 SINE Alu 2 147 0 1 1240 195 42 0 0 chr12 85941043 85941067 -35316463 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1240 1419 53 16 11 chr12 85941381 85941570 -35315960 - B2_Mm2 SINE B2 -4 191 2 1 1240 222 319 60 94 chr12 85941597 85941746 -35315784 - ID_B1 SINE B4 0 224 81 1 1240 200 143 24 0 chr12 85941869 85941911 -35315619 + GA-rich Low_complexity Low_complexity 3 45 0 1 1240 255 180 16 47 chr12 85941958 85942022 -35315508 - MLT1A1 LTR MaLR -273 135 74 1 1240 584 252 12 30 chr12 85942022 85942186 -35315344 + RSINE1 SINE B4 3 163 -2 1 1240 510 17 0 0 chr12 85942189 85942248 -35315282 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 1 1240 620 194 46 8 chr12 85942265 85942395 -35315135 + B1_Mur1 SINE Alu 2 136 -13 1 1240 856 143 21 0 chr12 85942428 85942568 -35314962 + B1_Mus1 SINE Alu 6 148 0 1 1240 25 31 0 0 chr12 85942569 85942601 -35314929 + AT_rich Low_complexity Low_complexity 1 32 0 1 1240 226 349 0 0 chr12 85942955 85943041 -35314489 + BC1_Mm scRNA scRNA 18 103 -49 1 1240 855 71 16 8 chr12 85943235 85943363 -35314167 + B2_Mm2 SINE B2 53 181 -14 1 1240 385 31 0 30 chr12 85943403 85943469 -35314061 + B2_Mm1a SINE B2 127 190 -3 1 1240 34 72 0 0 chr12 85943493 85943562 -35313968 + AT_rich Low_complexity Low_complexity 1 69 0 1 1240 1227 28 21 0 chr12 85943607 85943751 -35313779 - B1_Mus1 SINE Alu 0 148 2 1 1240 26 0 0 0 chr12 85945233 85945259 -35312271 + GC_rich Low_complexity Low_complexity 1 26 0 1 1240 524 219 25 34 chr12 85945544 85945662 -35311868 + RSINE1 SINE B4 8 124 -41 1 1240 471 130 0 0 chr12 85945662 85945739 -35311791 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1240 434 270 204 26 chr12 85947467 85947619 -35309911 + MLT1B LTR MaLR 202 380 -10 1 1240 230 320 103 13 chr12 85947639 85947794 -35309736 - MIRb SINE MIR -22 246 78 1 1240 955 129 194 43 chr12 85947817 85948003 -35309527 - B3 SINE B2 0 216 3 1 1240 793 165 22 8 chr12 85948035 85948169 -35309361 - B1_Mur2 SINE Alu -1 148 13 1 1240 313 270 96 32 chr12 85948175 85948332 -35309198 - MIRb SINE MIR -14 254 88 1 1240 967 143 14 0 chr12 85948335 85948473 -35309057 + B1_Mur4 SINE Alu 2 141 -9 1 1240 217 0 29 29 chr12 85948473 85948507 -35309023 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1240 718 294 69 10 chr12 85948785 85948988 -35308542 - B4A SINE B4 -71 221 7 1 1240 915 156 0 0 chr12 85948999 85949159 -35308371 + CT-rich Low_complexity Low_complexity 2 161 0 1 1240 444 254 61 35 chr12 85949162 85949276 -35308254 - PB1D10 SINE Alu 0 117 1 1 1240 1020 92 75 52 chr12 85950756 85950929 -35306601 + B2_Mm2 SINE B2 1 177 -18 1 1240 21 36 0 0 chr12 85950929 85950957 -35306573 + AT_rich Low_complexity Low_complexity 1 28 0 1 1240 951 219 53 11 chr12 85950970 85951159 -35306371 + B3 SINE B2 1 197 -19 1 1240 516 197 127 8 chr12 85951184 85951302 -35306228 + B1_Mur3 SINE Alu 2 133 -16 1 1240 232 94 0 0 chr12 85951336 85951368 -35306162 - B3A SINE B2 -153 45 14 1 1240 565 234 158 0 chr12 85951385 85951525 -35306005 + B3A SINE B2 1 164 -34 1 1240 333 47 0 0 chr12 85951525 85951568 -35305962 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1240 565 234 158 0 chr12 85951568 85951598 -35305932 + B3A SINE B2 165 197 -1 1 1240 431 156 91 91 chr12 85951610 85951709 -35305821 + MT2B LTR ERVL 153 251 -350 1 1240 803 78 129 0 chr12 85951627 85951743 -35305787 + B1_Mm SINE Alu 15 145 -2 1 1240 708 294 23 12 chr12 85951794 85951966 -35305564 - ID_B1 SINE B4 0 224 51 1 1240 521 244 26 9 chr12 85951959 85952075 -35305455 - B1F2 SINE Alu -31 118 1 1 1240 256 230 19 8 chr12 85954438 85954511 -35303019 - MIR SINE MIR -76 192 121 1 1240 334 368 97 27 chr12 85956539 85956572 -35300958 + L1M5 LINE L1 5017 5050 -1096 1 1240 192 40 0 0 chr12 85956572 85956597 -35300933 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1240 334 368 97 27 chr12 85956597 85956820 -35300710 + L1M5 LINE L1 5051 5291 -855 1 1240 924 141 0 7 chr12 85956834 85956977 -35300553 - B1_Mur3 SINE Alu 0 149 8 1 1240 310 309 97 56 chr12 85957093 85957237 -35300293 + RSINE1 SINE B4 5 154 -11 1 1240 1254 106 22 6 chr12 85957305 85957486 -35300044 + B2_Mm1a SINE B2 2 185 -8 1 1240 302 347 128 27 chr12 85957499 85957795 -35299735 + L1M5 LINE L1 5442 5767 -427 1 1240 36 23 0 0 chr12 85958583 85958626 -35298904 + AT_rich Low_complexity Low_complexity 1 43 0 1 1240 618 227 37 49 chr12 85958632 85958794 -35298736 - RSINE1 SINE B4 -4 161 2 1 1240 882 140 244 0 chr12 85958824 85958988 -35298542 - B3 SINE B2 -8 208 5 1 1240 194 0 39 0 chr12 85959014 85959040 -35298490 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1240 1150 73 0 0 chr12 85959040 85959177 -35298353 - B1_Mus2 SINE Alu -9 138 2 1 1240 1617 32 21 0 chr12 85959186 85959374 -35298156 - B2_Mm1t SINE B2 -1 192 1 1 1240 468 281 39 116 chr12 85959397 85959630 -35297900 + ID_B1 SINE B4 10 224 0 1 1240 702 126 8 40 chr12 85959755 85959879 -35297651 - B1_Mus1 SINE Alu 0 148 29 1 1240 814 258 44 15 chr12 85960595 85960800 -35296730 + B3 SINE B2 6 216 0 1 1240 596 198 16 32 chr12 85961083 85961208 -35296322 + B1F1 SINE Alu 26 148 -1 1 1240 259 322 105 40 chr12 85961211 85961363 -35296167 + RSINE1 SINE B4 4 165 0 1 1240 276 265 50 10 chr12 85961517 85961616 -35295914 + MER53 DNA hAT 77 179 -14 1 1240 399 216 19 19 chr12 85961536 85961640 -35295890 - MER53 DNA hAT -88 105 2 1 1240 193 350 98 0 chr12 85961682 85961805 -35295725 + MIR SINE MIR 126 260 -2 1 1240 510 158 218 0 chr12 85962335 85962436 -35295094 + B1_Mus2 SINE Alu 9 131 -16 1 1240 1155 82 7 0 chr12 85962653 85962799 -35294731 + B1_Mus2 SINE Alu 1 147 0 1 1240 334 350 65 14 chr12 85962811 85962950 -35294580 + ID_B1 SINE B4 21 166 -58 1 1240 1122 93 0 0 chr12 85963506 85963667 -35293863 + (TAGA)n Simple_repeat Simple_repeat 1 161 0 1 1240 622 225 96 32 chr12 85963668 85963824 -35293706 + B3 SINE B2 37 202 -14 1 1240 785 107 8 0 chr12 85963825 85963947 -35293583 + (GAA)n Simple_repeat Simple_repeat 2 124 0 1 1240 364 291 60 96 chr12 85964268 85964326 -35293204 + RSINE1 SINE B4 4 59 -106 1 1240 1651 47 0 0 chr12 85964326 85964518 -35293012 + B2_Mm1t SINE B2 1 192 -1 1 1240 364 291 60 96 chr12 85964518 85964626 -35292904 + RSINE1 SINE B4 60 164 -1 1 1240 528 184 52 9 chr12 85964706 85964821 -35292709 + PB1D9 SINE Alu 1 120 0 1 1240 25 31 0 0 chr12 85964838 85964870 -35292660 + AT_rich Low_complexity Low_complexity 1 32 0 1 1240 200 273 0 0 chr12 85964975 85965012 -35292518 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 1 1240 243 0 0 0 chr12 85965012 85965039 -35292491 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1240 200 273 0 0 chr12 85965039 85965056 -35292474 + (CATATA)n Simple_repeat Simple_repeat 1 17 0 1 1240 689 241 14 14 chr12 85965176 85965319 -35292211 + B1F SINE Alu 1 143 -6 1 1240 582 48 9 46 chr12 85965332 85965440 -35292090 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 1 1240 291 293 12 0 chr12 85965619 85965701 -35291829 + GA-rich Low_complexity Low_complexity 2 84 0 1 1240 1220 75 0 0 chr12 85967455 85967602 -35289928 - B1_Mus2 SINE Alu 0 147 1 1 1240 243 0 0 0 chr12 85967940 85967967 -35289563 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1240 809 173 15 0 chr12 85967969 85968102 -35289428 - B1_Mus1 SINE Alu -12 136 2 1 1240 333 118 0 0 chr12 85968257 85968308 -35289222 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1 1240 446 275 48 34 chr12 85968322 85968469 -35289061 - B1_Mur3 SINE Alu 0 149 1 1 1240 188 312 10 41 chr12 85968595 85968692 -35288838 + MIRb SINE MIR 111 204 -64 1 1240 991 79 16 0 chr12 85968697 85968824 -35288706 + B1_Mus2 SINE Alu 1 129 -18 1 1240 180 0 0 0 chr12 85968824 85968844 -35288686 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1240 407 221 125 0 chr12 85969202 85969306 -35288224 + B1F SINE Alu 26 142 -7 1 1240 824 137 8 0 chr12 85969370 85969494 -35288036 - B3 SINE B2 -90 126 2 1 1240 325 269 51 0 chr12 85969600 85969678 -35287852 + PB1D9 SINE Alu 31 112 -8 1 1240 286 220 0 0 chr12 85969718 85969777 -35287753 - L1M2 LINE L1 -797 5503 5445 1 1240 621 266 5 58 chr12 85969781 85969939 -35287591 + B3 SINE B2 36 187 -29 1 1240 216 0 0 0 chr12 85969939 85969963 -35287567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1240 621 266 5 58 chr12 85969963 85969992 -35287538 + B3 SINE B2 188 213 -3 1 1240 1236 91 31 26 chr12 85969994 85970155 -35287375 + B2_Mm2 SINE B2 2 158 -37 1 1240 315 0 0 0 chr12 85970155 85970190 -35287340 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1240 1236 91 31 26 chr12 85970190 85970220 -35287310 + B2_Mm2 SINE B2 159 194 -1 1 1240 1202 69 0 0 chr12 85970226 85970371 -35287159 + B1_Mus2 SINE Alu 1 145 -2 1 1240 2123 108 21 140 chr12 85970457 85970922 -35286608 + RMER17C LTR ERVK 1 410 0 1 1240 881 230 75 0 chr12 85970948 85971148 -35286382 + B3 SINE B2 2 216 0 1 1240 771 173 14 43 chr12 85971151 85971290 -35286240 + B1_Mus1 SINE Alu 3 137 -11 1 1240 216 0 0 0 chr12 85971290 85971314 -35286216 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1 1240 1158 54 7 39 chr12 85971319 85971472 -35286058 - B1_Mus1 SINE Alu 0 148 1 1 1240 395 182 224 32 chr12 85971830 85971955 -35285575 - HAL1-3A_ME LINE L1 -735 2123 1975 1 1240 550 189 0 43 chr12 85971955 85972143 -35285387 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1240 284 267 0 0 chr12 85972159 85972219 -35285311 - RMER15 LTR ERVL -113 462 403 1 1240 575 149 0 0 chr12 85972327 85972414 -35285116 + B1_Mur4 SINE Alu 59 145 -5 1 1240 496 267 113 20 chr12 85972440 85972635 -35284895 - Lx8 LINE L1 -411 7062 6850 1 1240 258 91 76 0 chr12 85972646 85972712 -35284818 + A-rich Low_complexity Low_complexity 2 72 0 1 1240 1598 272 61 85 chr12 85972714 85973188 -35284342 - Lx8 LINE L1 -619 6854 6384 1 1240 371 204 290 0 chr12 85973188 85973281 -35284249 + PB1D9 SINE Alu 1 120 0 1 1240 1598 272 61 85 chr12 85973281 85973477 -35284053 - Lx8 LINE L1 -1090 6383 6200 1 1240 816 102 31 16 chr12 85973591 85973720 -35283810 + B1_Mur3 SINE Alu 19 149 0 1 1240 1385 70 37 11 chr12 85973914 85974103 -35283427 + B2_Mm2 SINE B2 1 194 -1 1 1240 1286 102 5 21 chr12 85974105 85974264 -35283266 + B2_Mm2 SINE B2 1 158 -37 1 1240 180 0 0 0 chr12 85974264 85974284 -35283246 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 1240 1286 102 5 21 chr12 85974284 85974314 -35283216 + B2_Mm2 SINE B2 159 187 -8 1 1240 515 90 13 0 chr12 85974463 85974541 -35282989 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1240 411 266 145 0 chr12 85974605 85974729 -35282801 + B1F2 SINE Alu 2 143 -6 1 1240 519 276 19 99 chr12 85974758 85974919 -35282611 + B3A SINE B2 58 205 -11 1 1240 378 0 0 0 chr12 85975035 85975077 -35282453 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1240 396 0 0 0 chr12 85975077 85975120 -35282410 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1240 589 211 0 27 chr12 85975613 85975725 -35281805 - PB1D10 SINE Alu -7 110 2 1 1240 243 0 0 0 chr12 85975758 85975785 -35281745 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1240 330 67 0 0 chr12 85975785 85975829 -35281701 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1240 434 316 43 0 chr12 85975842 85975959 -35281571 - B1F SINE Alu -6 143 22 1 1240 28 29 0 0 chr12 85975977 85976012 -35281518 + AT_rich Low_complexity Low_complexity 1 35 0 1 1240 3209 123 53 0 chr12 85976129 85976617 -35280913 - RLTR19B LTR ERVK 0 715 202 1 1240 189 0 0 0 chr12 85976617 85976638 -35280892 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1240 1317 50 0 0 chr12 85976638 85976797 -35280733 - B2_Mm2 SINE B2 -34 161 3 1 1240 396 97 0 31 chr12 85976797 85976853 -35280677 - RLTR19B LTR ERVK -508 207 152 1 1240 1285 27 7 0 chr12 85976853 85976999 -35280531 + B1_Mm SINE Alu 1 147 0 1 1240 1123 98 0 65 chr12 85977016 85977202 -35280328 - RLTR19B LTR ERVK -541 174 1 1 1240 279 0 0 0 chr12 85977418 85977449 -35280081 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1240 293 345 40 26 chr12 85977456 85977608 -35279922 - RSINE1 SINE B4 -8 157 4 1 1240 876 189 0 0 chr12 85977656 85977804 -35279726 - B1_Mur3 SINE Alu -1 148 1 1 1240 344 97 16 0 chr12 85977944 85978006 -35279524 + (CCAA)n Simple_repeat Simple_repeat 2 64 0 1 1240 2036 167 63 23 chr12 85978267 85978666 -35278864 - MTC LTR MaLR 0 421 7 1 1240 1167 95 0 0 chr12 85978700 85978847 -35278683 + B1_Mus2 SINE Alu 1 147 0 1 1240 299 283 175 23 chr12 85978968 85979145 -35278385 - B3 SINE B2 -12 204 1 1 1240 21 0 0 0 chr12 85979145 85979166 -35278364 + AT_rich Low_complexity Low_complexity 1 21 0 1 1240 441 0 0 0 chr12 85979166 85979215 -35278315 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1240 276 273 80 0 chr12 85979332 85979420 -35278110 - B4 SINE B4 -192 100 6 1 1240 576 125 20 20 chr12 85979476 85979574 -35277956 - B1_Mur2 SINE Alu -2 147 50 1 1240 225 308 0 52 chr12 85979521 85979617 -35277913 - MT2B LTR ERVL -344 257 167 1 1240 458 224 64 27 chr12 85979621 85979731 -35277799 + B1F SINE Alu 36 149 0 1 1240 21 0 0 0 chr12 85979828 85979849 -35277681 + AT_rich Low_complexity Low_complexity 1 21 0 1 1240 22 0 0 0 chr12 85979972 85979994 -35277536 + AT_rich Low_complexity Low_complexity 1 22 0 1 1240 204 163 0 0 chr12 85980004 85980047 -35277483 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1240 297 275 174 42 chr12 85980050 85980194 -35277336 - RSINE1 SINE B4 0 165 3 1 1241 323 195 183 0 chr12 85983588 85983670 -35273860 - PB1D10 SINE Alu 0 117 21 1 1241 221 301 52 24 chr12 85983820 85983943 -35273587 + MIR SINE MIR 21 149 -127 1 1241 23 0 0 0 chr12 85984218 85984241 -35273289 + GC_rich Low_complexity Low_complexity 1 23 0 1 1241 312 219 40 14 chr12 85984248 85984322 -35273208 + MamRep137 DNA TcMar? 361 436 -8 1 1241 405 144 147 49 chr12 85984550 85984652 -35272878 - PB1D9 SINE Alu 0 120 9 1 1241 189 120 33 167 chr12 85984904 85984964 -35272566 + MIRm SINE MIR 135 186 -90 1 1241 244 296 33 76 chr12 85985041 85985177 -35272353 + MIRb SINE MIR 37 164 -104 1 1241 327 317 76 9 chr12 85985177 85985282 -35272248 - PB1 SINE Alu 0 127 16 1 1241 445 241 36 36 chr12 85985293 85985405 -35272125 - ID_B1 SINE B4 -106 118 7 1 1241 805 219 26 36 chr12 85985428 85985622 -35271908 - B3 SINE B2 0 216 25 1 1241 260 208 112 94 chr12 85985623 85985642 -35271888 - B2_Mm2 SINE B2 -14 181 10 1 1241 648 295 13 7 chr12 85985642 85985792 -35271738 - RSINE1 SINE B4 -4 161 11 1 1241 859 245 79 50 chr12 85985818 85986097 -35271433 - B4A SINE B4 0 292 6 1 1241 266 182 107 18 chr12 85986120 85986176 -35271354 - ID4 SINE ID -18 65 5 1 1241 725 145 0 33 chr12 85986354 85986475 -35271055 - B1_Mur4 SINE Alu -1 149 33 1 1241 1059 74 81 0 chr12 85986627 85986776 -35270754 - B2_Mm2 SINE B2 -31 164 4 1 1241 1603 43 0 0 chr12 85986947 85987134 -35270396 - B2_Mm1t SINE B2 -5 188 2 1 1241 815 141 7 7 chr12 85987212 85987355 -35270175 - BC1_Mm scRNA scRNA -8 144 2 1 1241 250 310 78 26 chr12 85987316 85987432 -35270098 - ZP3AR Satellite Satellite -77 135 14 1 1241 221 178 22 0 chr12 85987457 85987502 -35270028 + B4 SINE B4 2 47 -245 1 1241 1222 83 12 0 chr12 85987757 85987926 -35269604 - B2_Mm2 SINE B2 -24 171 1 1 1241 289 250 0 18 chr12 85987932 85987989 -35269541 - ID_B1 SINE B4 -91 133 78 1 1241 811 168 170 16 chr12 85988160 85988342 -35269188 - B3 SINE B2 -3 213 4 1 1241 540 296 23 0 chr12 85988447 85988579 -35268951 - B1F SINE Alu -13 136 2 1 1241 549 194 9 36 chr12 85988625 85988737 -35268793 - PB1D9 SINE Alu -7 113 5 1 1241 382 115 165 13 chr12 85988911 85988990 -35268540 - PB1D10 SINE Alu 0 117 27 1 1241 1100 54 0 51 chr12 85989033 85989189 -35268341 - B1_Mus1 SINE Alu 0 148 1 1 1241 919 73 0 56 chr12 85989194 85989338 -35268192 - URR1A DNA MER1_type -32 194 59 1 1241 206 222 44 0 chr12 85991740 85991785 -35265745 - L4 LINE RTE -1264 765 719 1 1241 1134 81 109 6 chr12 85992681 85992855 -35264675 - B2_Mm2 SINE B2 0 195 4 1 1241 298 284 0 26 chr12 85992927 85993003 -35264527 - ID4 SINE ID -9 74 1 1 1241 566 162 36 45 chr12 85993189 85993299 -35264231 + B1_Mus1 SINE Alu 40 148 0 1 1241 204 302 99 70 chr12 85993318 85993489 -35264041 + L2b LINE L2 2937 3112 -263 1 1241 483 188 39 125 chr12 85993509 85993637 -35263893 - B1_Mur1 SINE Alu -9 140 24 1 1241 1755 141 77 31 chr12 85993637 85994026 -35263504 + RMER17C LTR ERVK 2 408 -2 1 1241 884 158 29 0 chr12 85994065 85994204 -35263326 - B1_Mur4 SINE Alu -7 143 1 1 1241 299 273 100 10 chr12 85994213 85994313 -35263217 - PB1D10 SINE Alu -8 109 1 1 1241 288 300 12 0 chr12 85995253 85995333 -35262197 + ID4 SINE ID 1 81 -2 1 1241 186 143 0 0 chr12 85995745 85995780 -35261750 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1241 897 92 0 65 chr12 85995883 85996022 -35261508 - B1_Mur2 SINE Alu -19 130 1 1 1241 1173 88 0 0 chr12 85996084 85996231 -35261299 - B1_Mus1 SINE Alu -1 147 1 1 1241 1349 88 16 6 chr12 85996241 85996423 -35261107 - B2_Mm2 SINE B2 -10 185 2 1 1241 915 234 9 67 chr12 85996580 85996766 -35260764 - B3 SINE B2 -3 213 37 1 1241 852 163 7 7 chr12 85996766 85996914 -35260616 - B1_Mus1 SINE Alu 0 148 1 1 1241 915 234 9 67 chr12 85996914 85996951 -35260579 - B3 SINE B2 -180 36 3 1 1241 201 39 0 0 chr12 85996963 85996989 -35260541 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1 1241 1271 34 0 0 chr12 85996989 85997135 -35260395 - B1_Mus1 SINE Alu -1 147 2 1 1241 500 226 110 24 chr12 85997171 85997298 -35260232 + B1_Mur1 SINE Alu 2 139 -10 1 1241 718 239 56 0 chr12 85997321 85997463 -35260067 + RSINE1 SINE B4 11 160 -5 1 1241 218 301 52 83 chr12 85997463 85997513 -35260017 + B2_Mm2 SINE B2 10 195 0 1 1241 365 189 162 40 chr12 85997647 85997746 -35259784 + PB1D10 SINE Alu 1 111 -6 1 1241 224 292 71 30 chr12 85997816 85997915 -35259615 - B3 SINE B2 -108 108 6 1 1241 1536 156 60 21 chr12 85999397 85999678 -35257852 - ORR1B2 LTR MaLR -1 366 75 1 1241 896 287 5 18 chr12 85999689 85999909 -35257621 + ID_B1 SINE B4 1 217 -7 1 1241 180 97 0 0 chr12 85999934 85999965 -35257565 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1241 721 195 0 0 chr12 86000004 86000127 -35257403 - B1_Mur2 SINE Alu -18 131 9 1 1241 473 276 0 66 chr12 86000141 86000277 -35257253 + RSINE1 SINE B4 11 137 -28 2 1241 698 185 21 26 chr12 86000308 86000488 -35257042 + B3 SINE B2 8 187 -8 3 1241 1237 166 34 0 chr12 86000683 86000888 -35256642 + B3 SINE B2 1 212 -4 4 1241 232 146 24 0 chr12 86000906 86000947 -35256583 + ID4_ SINE ID 2 43 -40 5 1241 1653 37 0 0 chr12 86000964 86001155 -35256375 + B2_Mm1t SINE B2 3 193 0 6 1241 482 259 72 39 chr12 86001356 86001509 -35256021 - B3 SINE B2 -11 205 48 7 1241 555 138 11 0 chr12 86001508 86001595 -35255935 - B1_Mur2 SINE Alu -1 148 61 8 1241 336 230 0 51 chr12 86001591 86001669 -35255861 - B3 SINE B2 -141 75 2 7 1241 1293 81 40 6 chr12 86002317 86002492 -35255038 - B2_Mm2 SINE B2 -14 181 1 9 1241 603 297 7 0 chr12 86002510 86002658 -35254872 - B1F1 SINE Alu 0 149 1 1 1241 29 0 0 0 chr12 86002665 86002694 -35254836 + AT_rich Low_complexity Low_complexity 1 29 0 1 1241 916 18 9 0 chr12 86002698 86002808 -35254722 - B1_Mm SINE Alu 0 147 37 1 1241 28 0 0 0 chr12 86002808 86002836 -35254694 + AT_rich Low_complexity Low_complexity 1 28 0 1 1241 851 181 13 40 chr12 86002839 86002862 -35254668 + B1_Mus2 SINE Alu 1 23 -124 1 1241 2694 58 6 0 chr12 86002862 86003187 -35254343 + ORR1A2 LTR MaLR 1 327 0 1 1241 851 181 13 40 chr12 86003187 86003313 -35254217 + B1_Mus2 SINE Alu 24 146 -1 1 1241 293 310 16 74 chr12 86003208 86003330 -35254200 + RLTR25B LTR ERVK 441 555 -473 1 1241 896 274 21 30 chr12 86003330 86003563 -35253967 - B4A SINE B4 -59 233 3 1 1241 476 43 0 28 chr12 86003621 86003693 -35253837 + (CAGAGA)n Simple_repeat Simple_repeat 2 71 0 1 1241 203 194 62 46 chr12 86003928 86003993 -35253537 + MER5B DNA MER1_type 31 96 -82 1 1241 266 148 19 0 chr12 86004104 86004158 -35253372 + CT-rich Low_complexity Low_complexity 2 56 0 2 1241 233 279 0 62 chr12 86004188 86004253 -35253277 - ID SINE ID -163 61 1 2 1241 1017 138 53 37 chr12 86004304 86004492 -35253038 - B2_Mm2 SINE B2 -3 192 2 2 1241 404 240 136 23 chr12 86004520 86004553 -35252977 + ID_B1 SINE B4 52 99 -125 2 1241 599 176 0 112 chr12 86004553 86004687 -35252843 + PB1D9 SINE Alu 1 119 -1 2 1241 426 39 0 0 chr12 86004693 86004745 -35252785 + (GAAAA)n Simple_repeat Simple_repeat 2 53 0 2 1241 279 226 0 0 chr12 86004746 86004808 -35252722 + L1MC4a LINE L1 7485 7546 -336 2 1241 378 254 45 113 chr12 86004808 86004941 -35252589 + PB1D9 SINE Alu 26 149 0 2 1241 599 277 107 25 chr12 86004942 86005223 -35252307 + L1MC4a LINE L1 7576 7879 -3 2 1241 1204 188 0 23 chr12 86005247 86005465 -35252065 + B3 SINE B2 3 215 -1 2 1241 774 228 17 60 chr12 86005498 86005731 -35251799 + ID_B1 SINE B4 2 224 0 2 1241 364 276 28 19 chr12 86006013 86006120 -35251410 + ID_B1 SINE B4 83 190 -34 3 1241 450 108 36 12 chr12 86006110 86006178 -35251352 + B2_Mm1a SINE B2 106 172 -21 3 1241 1573 48 0 26 chr12 86006178 86006370 -35251160 + B2_Mm1t SINE B2 1 187 -6 3 1241 450 108 36 12 chr12 86006370 86006385 -35251145 + B2_Mm1a SINE B2 173 190 -3 3 1241 261 320 85 57 chr12 86006385 86006597 -35250933 + L1M4 LINE L1 4516 4733 -1413 3 1241 247 288 0 48 chr12 86006597 86006614 -35250916 + MT2B LTR ERVL 153 165 -436 3 1241 323 234 16 139 chr12 86006614 86006743 -35250787 + PB1D10 SINE Alu 3 115 -2 3 1241 1153 139 0 0 chr12 86006852 86007008 -35250522 + B2_Mm2 SINE B2 1 156 -39 3 1241 567 0 0 0 chr12 86007008 86007071 -35250459 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1241 1153 139 0 0 chr12 86007071 86007086 -35250444 + B2_Mm2 SINE B2 157 171 -24 3 1241 1565 41 10 5 chr12 86007205 86007399 -35250131 + B2_Mm2 SINE B2 1 195 0 3 1241 543 31 0 0 chr12 86007411 86007476 -35250054 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 3 1241 349 209 23 0 chr12 86007477 86007563 -35249967 + L1M4 LINE L1 4949 5036 -1110 3 1241 1975 150 187 46 chr12 86007614 86008005 -35249525 + RLTR41 LTR ERV1 1 446 0 4 1241 317 262 71 0 chr12 86008010 86008094 -35249436 + ID_B1 SINE B4 134 223 -1 4 1241 458 263 45 114 chr12 86008109 86008311 -35249219 + L1M4 LINE L1 5157 5344 -802 3 1241 23 33 0 0 chr12 86008452 86008482 -35249048 + AT_rich Low_complexity Low_complexity 1 30 0 4 1241 245 143 114 0 chr12 86008492 86008562 -35248968 + (TTAA)n Simple_repeat Simple_repeat 1 78 0 4 1241 572 284 25 19 chr12 86008819 86008991 -35248539 + ID_B1 SINE B4 73 244 -48 4 1241 317 271 7 26 chr12 86009496 86009533 -35247997 - B4A SINE B4 -109 183 110 4 1241 296 182 0 18 chr12 86009533 86009589 -35247941 - B1F SINE Alu -88 61 7 4 1241 317 271 7 26 chr12 86009589 86009602 -35247928 - B4A SINE B4 -109 109 80 4 1241 494 266 23 50 chr12 86009605 86009823 -35247707 - L1M2 LINE L1 -1785 4358 4145 4 1241 422 246 192 48 chr12 86009908 86010081 -35247449 + B3 SINE B2 14 194 -1 4 1241 427 214 20 29 chr12 86010146 86010281 -35247249 - B1_Mur2 SINE Alu -18 132 1 4 1241 373 322 0 65 chr12 86010376 86010499 -35247031 + PB1D10 SINE Alu 1 115 -2 5 1241 484 332 25 11 chr12 86010499 86010522 -35247008 + ID_B1 SINE B4 85 239 -53 5 1241 390 249 305 18 chr12 86010522 86010697 -35246833 + B4A SINE B4 1 225 -67 5 1241 1263 83 61 0 chr12 86010701 86010881 -35246649 + B2_Mm2 SINE B2 2 192 -3 5 1241 231 236 66 53 chr12 86010872 86010948 -35246582 + B4A SINE B4 216 292 0 5 1241 262 24 23 45 chr12 86010975 86011019 -35246511 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 5 1241 245 289 92 0 chr12 86011021 86011097 -35246433 - ID4_ SINE ID 0 83 1 5 1241 309 287 49 10 chr12 86011105 86011207 -35246323 - PB1D10 SINE Alu -2 115 10 5 1241 1684 11 0 21 chr12 86011292 86011484 -35246046 + B2_Mm1a SINE B2 2 189 -4 5 1241 1024 121 0 0 chr12 86011497 86011637 -35245893 + B1_Mus1 SINE Alu 2 141 -7 5 1241 777 219 112 0 chr12 86011641 86011801 -35245729 - B3A SINE B2 -14 184 7 5 1241 632 183 0 70 chr12 86011784 86011913 -35245617 - B1_Mur2 SINE Alu -29 120 1 6 1241 717 123 17 9 chr12 86011939 86012054 -35245476 - B1_Mur3 SINE Alu 0 149 34 6 1241 482 318 26 75 chr12 86012097 86012403 -35245127 - L1MB2 LINE L1 -52 6119 5829 6 1241 1040 209 17 43 chr12 86013304 86013534 -35243996 - ID_B1 SINE B4 0 224 1 6 1241 534 245 41 20 chr12 86013595 86013741 -35243789 - B1F SINE Alu 0 149 1 6 1241 339 320 24 60 chr12 86013597 86013763 -35243767 - ID_B1 SINE B4 0 224 65 6 1241 1344 76 26 31 chr12 86014014 86014205 -35243325 + B2_Mm1t SINE B2 1 190 -3 6 1241 212 231 57 19 chr12 86014293 86014346 -35243184 + MIRc SINE MIR 116 170 -98 6 1241 386 165 304 27 chr12 86016740 86016852 -35240678 + B1_Mur4 SINE Alu 1 143 -7 6 1241 184 167 0 40 chr12 86016864 86016914 -35240616 + GA-rich Low_complexity Low_complexity 1 48 0 6 1241 252 310 140 7 chr12 86017462 86017605 -35239925 + LTR16A LTR ERVL 212 373 -78 7 1241 243 0 0 0 chr12 86019011 86019038 -35238492 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1241 495 213 185 0 chr12 86020194 86020302 -35237228 + RSINE1 SINE B4 15 142 -23 7 1241 689 146 49 49 chr12 86020349 86020493 -35237037 - B1_Mus1 SINE Alu 0 148 5 7 1241 432 215 0 151 chr12 86021013 86021139 -35236391 - ID_B1 SINE B4 -15 209 103 7 1241 599 238 41 20 chr12 86021148 86021294 -35236236 - B1_Mur2 SINE Alu 0 149 1 7 1241 359 306 42 59 chr12 86021875 86021993 -35235537 + MIR SINE MIR 63 178 -90 7 1241 275 319 55 0 chr12 86022003 86022094 -35235436 - L2a LINE L2 -1 3425 3330 7 1241 306 0 0 0 chr12 86022269 86022303 -35235227 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1241 552 273 42 3 chr12 86022315 86022468 -35235062 - B3A SINE B2 -28 170 7 7 1241 198 0 0 0 chr12 86022478 86022500 -35235030 + (CAT)n Simple_repeat Simple_repeat 2 23 0 8 1241 915 161 7 7 chr12 86022500 86022638 -35234892 - B1_Mur4 SINE Alu -12 138 1 8 1241 359 217 0 14 chr12 86022641 86022705 -35234825 - B1F SINE Alu -1 148 86 8 1241 310 176 158 39 chr12 86022705 86022787 -35234743 + PB1D9 SINE Alu 3 107 -13 8 1241 186 43 0 0 chr12 86022787 86022810 -35234720 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 8 1241 259 272 173 0 chr12 86022848 86022929 -35234601 - PB1D10 SINE Alu -22 95 1 8 1241 406 232 0 24 chr12 86022986 86023070 -35234460 + PB1D10 SINE Alu 10 91 -26 8 1241 921 162 0 20 chr12 86023698 86023849 -35233681 + B1_Mur4 SINE Alu 2 149 -1 8 1241 1143 181 53 14 chr12 86023981 86024189 -35233341 - B3 SINE B2 0 216 1 8 1241 663 13 0 0 chr12 86024467 86024543 -35232987 + (GA)n Simple_repeat Simple_repeat 1 76 0 8 1241 466 16 16 16 chr12 86026221 86026285 -35231245 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 9 1241 233 213 0 0 chr12 86026793 86026840 -35230690 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1241 238 269 73 15 chr12 86026966 86027034 -35230496 + MER66B LTR ERV1 406 477 -9 9 1241 252 191 93 130 chr12 86027205 86027313 -35230217 - MIR SINE MIR 0 262 159 9 1241 324 321 86 74 chr12 86027327 86027502 -35230028 + L1MEg LINE L1 1 177 -5907 9 1241 330 345 18 24 chr12 86027538 86027707 -35229823 + L1MEg LINE L1 300 467 -5617 9 1241 370 271 0 0 chr12 86027776 86027846 -35229684 - ID SINE ID -151 73 4 9 1241 277 267 93 0 chr12 86027866 86027941 -35229589 - ID4 SINE ID 0 83 2 9 1241 360 0 0 0 chr12 86027960 86028000 -35229530 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1241 225 235 20 0 chr12 86028007 86028058 -35229472 - PB1D10 SINE Alu -30 87 36 9 1241 470 214 188 0 chr12 86028052 86028169 -35229361 + ID_B1 SINE B4 84 222 -2 9 1241 320 310 36 58 chr12 86028169 86028189 -35229341 + B1F1 SINE Alu 3 136 -13 1 1241 651 252 0 0 chr12 86028253 86028384 -35229146 + ID_B1 SINE B4 82 212 -12 1 1241 311 294 81 0 chr12 86028418 86028554 -35228976 + L1ME1 LINE L1 5937 6083 -96 1 1241 222 37 0 0 chr12 86028584 86028611 -35228919 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1241 366 289 96 27 chr12 86028716 86028862 -35228668 - MIR SINE MIR -95 167 12 9 1241 250 278 143 76 chr12 86028917 86029198 -35228332 - RSINE1 SINE B4 0 292 1 1 1241 331 275 115 51 chr12 86029281 86029302 -35228228 - MIRb SINE MIR -69 199 176 1 1241 488 230 34 42 chr12 86029302 86029420 -35228110 + PB1D10 SINE Alu 1 117 0 1 1241 331 275 115 51 chr12 86029420 86029555 -35227975 - MIRb SINE MIR -93 175 33 1 1241 1021 102 7 13 chr12 86029680 86029829 -35227701 + B1_Mus1 SINE Alu 1 148 0 1 1241 445 297 55 0 chr12 86030391 86030519 -35227011 - ID_B1 SINE B4 -3 221 87 1 1241 650 204 60 15 chr12 86030576 86030710 -35226820 + RSINE1 SINE B4 4 143 -22 1 1241 460 273 82 25 chr12 86030777 86030935 -35226595 + ID_B1 SINE B4 1 167 -57 1 1241 299 333 0 0 chr12 86030953 86031025 -35226505 + ID4_ SINE ID 12 83 0 1 1241 780 298 127 62 chr12 86031054 86031549 -35225981 + MLT1H1 LTR MaLR 15 579 0 1 1241 593 299 56 78 chr12 86031552 86031925 -35225605 + L2c LINE L2 3022 3386 -1 1 1241 253 269 100 78 chr12 86031979 86032023 -35225507 - RMER17D LTR ERVK -279 610 514 1 1241 855 151 0 0 chr12 86032023 86032149 -35225381 + B1_Mus2 SINE Alu 1 126 -21 1 1241 253 269 100 78 chr12 86032149 86032209 -35225321 - RMER17D LTR ERVK -279 513 376 1 1241 484 214 52 67 chr12 86032221 86032356 -35225174 + B3 SINE B2 84 216 0 1 1241 189 0 0 0 chr12 86032660 86032681 -35224849 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1241 213 133 0 0 chr12 86032775 86032805 -35224725 + B1F SINE Alu 1 30 -119 1 1241 383 157 183 78 chr12 86032805 86032985 -35224545 + L1MA5A LINE L1 5869 6067 -233 1 1241 27 62 0 0 chr12 86032994 86033042 -35224488 + AT_rich Low_complexity Low_complexity 1 48 0 1 1241 459 0 0 0 chr12 86033270 86033321 -35224209 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1241 664 290 77 58 chr12 86033454 86033714 -35223816 + B4A SINE B4 7 271 -21 1 1241 426 39 0 0 chr12 86033776 86033828 -35223702 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1241 365 252 80 18 chr12 86033882 86033995 -35223535 + PB1D9 SINE Alu 1 120 0 1 1241 1181 68 0 0 chr12 86034080 86034227 -35223303 - B1_Mus1 SINE Alu 0 148 2 1 1241 559 129 274 8 chr12 86034914 86035031 -35222499 + B1_Mur4 SINE Alu 3 150 0 1 1241 224 216 0 19 chr12 86035281 86035333 -35222197 + GA-rich Low_complexity Low_complexity 2 52 0 1 1241 1253 156 4 89 chr12 86035609 86035855 -35221675 + URR1B DNA MER1_type 1 225 0 1 1241 732 211 38 0 chr12 86036365 86036498 -35221032 - B1F SINE Alu -11 138 1 1 1241 736 175 262 6 chr12 86036532 86036704 -35220826 - B3 SINE B2 0 216 1 1 1241 279 0 0 0 chr12 86037351 86037382 -35220148 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1241 352 254 198 0 chr12 86037813 86037939 -35219591 - MIR3 SINE MIR -27 181 31 1 1241 255 300 39 53 chr12 86038388 86038512 -35219018 - MIRc SINE MIR -77 191 70 1 1241 513 0 0 0 chr12 86038717 86038774 -35218756 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1241 24 0 0 0 chr12 86039653 86039677 -35217853 + GC_rich Low_complexity Low_complexity 1 24 0 1 1241 222 62 0 0 chr12 86039869 86039901 -35217629 + (CGGGG)n Simple_repeat Simple_repeat 2 33 0 1 1241 694 162 9 26 chr12 86040619 86040733 -35216797 - B2_Mm1t SINE B2 -80 113 2 1 1241 339 25 0 0 chr12 86040733 86040773 -35216757 + (TTTAA)n Simple_repeat Simple_repeat 1 40 0 1 1241 207 0 0 0 chr12 86040783 86040806 -35216724 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1241 218 56 28 0 chr12 86041466 86041502 -35216028 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1 1241 267 315 52 35 chr12 86041612 86041727 -35215803 + MIR SINE MIR 24 140 -68 1 1241 266 269 14 97 chr12 86042063 86042199 -35215331 - L2b LINE L2 -205 3170 3054 1 1241 972 82 15 22 chr12 86042365 86042502 -35215028 + B1_Mus2 SINE Alu 12 147 0 1 1241 276 130 0 0 chr12 86042539 86042585 -35214945 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1241 257 252 10 0 chr12 86044302 86044371 -35213159 - B1F2 SINE Alu -41 76 5 1 1241 852 121 80 43 chr12 86044723 86044861 -35212669 - B1_Mur4 SINE Alu -7 143 1 1 1241 304 311 28 28 chr12 86044863 86044969 -35212561 - PB1D9 SINE Alu -5 115 10 1 1241 216 0 0 0 chr12 86044979 86045003 -35212527 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1241 781 223 70 35 chr12 86045042 86045214 -35212316 - B4 SINE B4 -18 274 97 1 1241 1021 120 0 57 chr12 86045214 86045373 -35212157 + B1_Mur4 SINE Alu 1 150 0 1 1241 191 61 0 29 chr12 86045418 86045452 -35212078 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 1 1241 377 327 110 18 chr12 86045724 86045942 -35211588 - MIR SINE MIR -24 238 1 1 1241 794 223 7 7 chr12 86045970 86046119 -35211411 + B1_Mur3 SINE Alu 1 149 0 1 1241 28 0 0 0 chr12 86046119 86046147 -35211383 + AT_rich Low_complexity Low_complexity 1 28 0 1 1241 383 255 32 34 chr12 86046256 86046362 -35211168 - PB1D7 SINE Alu -8 112 9 1 1241 464 220 90 45 chr12 86046381 86046514 -35211016 - B1F SINE Alu 0 149 11 1 1241 334 287 52 92 chr12 86046514 86046554 -35210976 - ID_B1 SINE B4 0 224 59 1 1241 299 189 19 0 chr12 86046551 86046604 -35210926 + ID_B1 SINE B4 82 135 -89 1 1241 474 33 0 0 chr12 86046796 86046856 -35210674 + (CAAGA)n Simple_repeat Simple_repeat 2 61 0 1 1241 1382 63 23 0 chr12 86046898 86047072 -35210458 + B2_Mm1t SINE B2 2 179 -14 1 1241 406 115 313 17 chr12 86047104 86047219 -35210311 + B2_Mm2 SINE B2 47 195 0 1 1241 252 0 0 0 chr12 86047741 86047769 -35209761 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1241 253 62 42 0 chr12 86047858 86047906 -35209624 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 1 1241 324 0 0 0 chr12 86048208 86048244 -35209286 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1241 456 238 75 81 chr12 86048559 86048719 -35208811 - RSINE1 SINE B4 -4 161 3 1 1241 262 264 42 0 chr12 86049502 86049574 -35207956 - ID_B1 SINE B4 -1 223 149 1 1241 441 274 6 93 chr12 86049532 86049552 -35207978 + ID_B1 SINE B4 67 213 -11 1 1241 705 189 0 64 chr12 86049552 86049693 -35207837 + B1_Mur2 SINE Alu 7 138 -11 1 1241 207 0 0 0 chr12 86049694 86049717 -35207813 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1241 736 281 56 0 chr12 86049724 86049902 -35207628 - ID_B1 SINE B4 -34 190 3 1 1241 352 200 7 185 chr12 86049951 86049966 -35207564 + MT2B LTR ERVL 155 222 -379 1 1241 722 200 13 58 chr12 86049966 86050036 -35207494 + B1_Mur4 SINE Alu 3 68 -82 1 1241 3286 48 10 0 chr12 86050036 86050428 -35207102 + MTB LTR MaLR 5 400 0 1 1241 352 200 7 185 chr12 86050428 86050477 -35207053 + MT2B LTR ERVL 223 265 -336 1 1241 722 200 13 58 chr12 86050477 86050511 -35207019 + B1_Mur4 SINE Alu 69 149 -1 1 1241 21 0 0 0 chr12 86050542 86050563 -35206967 + AT_rich Low_complexity Low_complexity 1 21 0 1 1241 716 318 73 8 chr12 86051323 86051583 -35205947 - MER46C DNA MER2_type -3 335 59 1 1241 1475 87 0 5 chr12 86051871 86052067 -35205463 - B2_Mm2 SINE B2 0 195 1 1 1241 749 279 35 20 chr12 86052088 86052322 -35205208 - ID_B1 SINE B4 -44 248 4 1 1241 1478 53 27 0 chr12 86052333 86052520 -35205010 - B2_Mm1t SINE B2 -1 192 1 1 1241 622 96 0 11 chr12 86052538 86052633 -35204897 - B1_Mur3 SINE Alu -39 110 17 1 1241 346 307 41 48 chr12 86052633 86052678 -35204852 - B4 SINE B4 -87 188 60 1 1241 718 204 21 14 chr12 86053442 86053586 -35203944 + ID_B1 SINE B4 1 145 -79 1 1241 452 179 20 59 chr12 86053667 86053768 -35203762 + B1_Mur3 SINE Alu 51 147 -2 1 1241 186 100 0 0 chr12 86053873 86053903 -35203627 - L2a LINE L2 -370 3056 3027 1 1241 272 346 85 44 chr12 86054080 86054328 -35203202 - L2 LINE L2 -665 2754 2497 1 1241 207 0 0 0 chr12 86054372 86054395 -35203135 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1241 698 135 0 0 chr12 86054395 86054499 -35203031 - B1_Mus2 SINE Alu -9 138 35 1 1241 1212 195 9 19 chr12 86054606 86054820 -35202710 + B3 SINE B2 2 213 -3 1 1241 531 276 122 35 chr12 86054831 86055086 -35202444 + B4A SINE B4 2 278 -14 1 1241 714 168 19 0 chr12 86055144 86055305 -35202225 + (TAGA)n Simple_repeat Simple_repeat 4 167 0 1 1241 605 234 45 8 chr12 86055305 86055457 -35202073 + ID_B1 SINE B4 82 236 -56 1 1241 196 354 144 56 chr12 86056021 86056416 -35201114 - L2 LINE L2 -868 2551 2122 1 1241 303 247 80 8 chr12 86056466 86056555 -35200975 + B3A SINE B2 1 91 -104 1 1241 662 178 0 16 chr12 86056567 86056750 -35200780 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1241 227 353 23 12 chr12 86056751 86056837 -35200693 - L2 LINE L2 -1372 2047 1961 1 1241 354 282 0 0 chr12 86056979 86057065 -35200465 + ID4_ SINE ID 8 93 -59 1 1241 1237 36 0 0 chr12 86057164 86057303 -35200227 + B1_Mus1 SINE Alu 1 139 -9 1 1241 216 0 0 0 chr12 86057303 86057327 -35200203 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1 1241 1505 42 0 73 chr12 86057811 86058017 -35199513 - B2_Mm1a SINE B2 -1 192 2 1 1241 918 152 0 20 chr12 86058018 86058166 -35199364 - B1_Mus1 SINE Alu 0 148 4 1 1241 488 93 0 13 chr12 86058173 86058372 -35199158 + (TTTCC)n Simple_repeat Simple_repeat 1 196 0 1 1241 378 0 0 0 chr12 86058372 86058414 -35199116 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1241 395 231 173 0 chr12 86058415 86058519 -35199011 - RSINE1 SINE B4 -41 124 3 2 1241 462 253 37 32 chr12 86059096 86059240 -35198290 + B1F SINE Alu 2 148 -1 2 1241 383 287 60 95 chr12 86059338 86059503 -35198027 + B2_Mm2 SINE B2 1 164 -31 2 1241 297 0 0 0 chr12 86059503 86059536 -35197994 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1241 697 199 84 0 chr12 86059536 86059667 -35197863 - B1_Mur4 SINE Alu -8 142 1 2 1241 383 287 60 95 chr12 86059667 86059700 -35197830 + B2_Mm2 SINE B2 165 192 -3 2 1241 313 270 148 5 chr12 86059834 86059984 -35197546 + ID_B1 SINE B4 2 185 -39 2 1241 296 292 47 93 chr12 86060019 86060234 -35197296 + L1M5 LINE L1 2464 2668 -3478 2 1241 538 206 92 78 chr12 86060240 86060393 -35197137 + MTD LTR MaLR 1 155 -264 2 1241 513 212 102 0 chr12 86060390 86060508 -35197022 + B3 SINE B2 5 134 -82 2 1241 205 161 0 0 chr12 86060508 86060539 -35196991 + polypyrimidine Low_complexity Low_complexity 2 32 0 2 1241 207 0 0 0 chr12 86060539 86060562 -35196968 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1241 224 162 0 51 chr12 86060616 86060655 -35196875 - B3 SINE B2 -148 68 32 2 1241 1458 93 0 5 chr12 86060655 86060849 -35196681 - B2_Mm2 SINE B2 -2 193 1 2 1241 256 280 0 0 chr12 86060851 86060901 -35196629 + B3 SINE B2 122 171 -45 2 1241 241 248 8 40 chr12 86060916 86061042 -35196488 + L1MEc LINE L1 2272 2393 -4007 2 1241 458 226 118 15 chr12 86061091 86061226 -35196304 + B1F1 SINE Alu 1 149 0 2 1241 1698 192 88 0 chr12 86061244 86061587 -35195943 + RLTR30 LTR ERV1 7 379 0 2 1241 216 148 16 32 chr12 86061589 86061652 -35195878 + GA-rich Low_complexity Low_complexity 3 64 0 2 1241 254 51 0 49 chr12 86061650 86061691 -35195839 + (AGGGGG)n Simple_repeat Simple_repeat 1 39 0 2 1241 312 256 51 0 chr12 86061758 86061836 -35195694 + ID4 SINE ID 2 83 0 2 1241 487 200 44 26 chr12 86061886 86061999 -35195531 + B1F SINE Alu 33 147 -2 2 1241 657 276 25 13 chr12 86062119 86062277 -35195253 - RSINE1 SINE B4 -4 161 2 2 1241 319 306 16 47 chr12 86062291 86062418 -35195112 - PB1 SINE Alu -4 123 1 2 1241 634 294 99 79 chr12 86062468 86062615 -35194915 - MTEa LTR MaLR -11 368 228 2 1241 3289 31 31 0 chr12 86062615 86062999 -35194531 + MTA_Mm LTR MaLR 1 396 0 2 1241 634 294 99 79 chr12 86062999 86063154 -35194376 - MTEa LTR MaLR -152 227 60 2 1241 197 33 33 0 chr12 86063181 86063211 -35194319 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1241 632 133 57 9 chr12 86063211 86063317 -35194213 - PB1D9 SINE Alu -8 112 2 2 1241 268 306 42 0 chr12 86063369 86063441 -35194089 + PB1D9 SINE Alu 40 114 -6 2 1241 527 167 33 0 chr12 86063491 86063581 -35193949 + B1_Mus2 SINE Alu 50 142 -5 2 1241 1191 69 0 0 chr12 86063593 86063738 -35193792 + B1_Mus2 SINE Alu 3 147 0 2 1241 243 146 0 0 chr12 86063739 86063780 -35193750 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1241 423 303 135 35 chr12 86063783 86064043 -35193487 + B4A SINE B4 1 286 -6 2 1241 195 129 0 0 chr12 86064134 86064165 -35193365 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1241 422 232 24 88 chr12 86064378 86064522 -35193008 - PB1D10 SINE Alu -1 148 6 2 1241 240 35 0 0 chr12 86064591 86064620 -35192910 + (CTG)n Simple_repeat Simple_repeat 1 29 0 2 1241 1347 82 38 0 chr12 86064625 86064809 -35192721 - B2_Mm2 SINE B2 -3 192 2 2 1241 564 164 67 33 chr12 86064819 86064939 -35192591 - B1_Mur4 SINE Alu 0 150 27 2 1241 758 299 122 28 chr12 86064950 86065236 -35192294 + MLT2C1 LTR ERVL 85 397 0 2 1241 267 250 14 123 chr12 86065291 86065364 -35192166 + tRNA-Ala-GCA tRNA tRNA 2 66 -9 2 1241 537 16 0 0 chr12 86065747 86065809 -35191721 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1241 231 290 14 14 chr12 86065885 86065955 -35191575 + MER5B DNA MER1_type 109 178 0 2 1241 839 274 100 12 chr12 86066185 86066436 -35191094 + B4 SINE B4 2 274 -18 2 1241 498 17 0 0 chr12 86066444 86066503 -35191027 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1241 254 354 20 30 chr12 86067010 86067230 -35190300 - MIRc SINE MIR -17 251 20 2 1241 469 235 0 39 chr12 86067254 86067356 -35190174 - ID_B1 SINE B4 -21 203 106 2 1241 181 311 172 32 chr12 86067417 86067510 -35190020 - MIR SINE MIR -59 149 44 2 1241 208 384 30 0 chr12 86068531 86068630 -35188900 + MIRc SINE MIR 60 161 -107 2 1241 189 324 28 14 chr12 86068644 86068716 -35188814 - MIRb SINE MIR -8 260 188 2 1241 346 227 69 57 chr12 86068876 86068978 -35188552 - PB1D10 SINE Alu -5 112 3 2 1241 450 101 0 0 chr12 86069008 86069077 -35188453 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1241 555 188 19 29 chr12 86069079 86069183 -35188347 - B3A SINE B2 -57 141 39 2 1241 326 274 0 35 chr12 86069209 86069296 -35188234 - B1_Mur1 SINE Alu -2 147 64 2 1241 249 219 0 0 chr12 86070153 86070194 -35187336 + B4A SINE B4 88 128 -164 2 1241 400 227 0 104 chr12 86070623 86070815 -35186715 + (CAGG)n Simple_repeat Simple_repeat 3 174 0 2 1241 288 70 0 0 chr12 86071328 86071371 -35186159 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1241 1170 50 0 7 chr12 86071371 86071511 -35186019 - B1_Mm SINE Alu -7 140 2 2 1241 701 180 0 23 chr12 86071511 86071626 -35185904 + B1F SINE Alu 22 136 -13 2 1241 207 0 0 0 chr12 86071626 86071649 -35185881 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2 1241 701 180 0 23 chr12 86071649 86071664 -35185866 + B1F SINE Alu 137 149 0 2 1241 276 275 25 12 chr12 86072288 86072369 -35185161 + L2c LINE L2 3136 3217 -170 2 1241 468 177 0 37 chr12 86072438 86072520 -35185010 + PB1 SINE Alu 17 95 -32 2 1241 424 266 0 18 chr12 86072615 86072726 -35184804 - PB1D10 SINE Alu -6 111 3 2 1241 857 95 9 0 chr12 86072736 86072852 -35184678 - B2_Mm1t SINE B2 -75 118 2 2 1241 393 328 49 61 chr12 86073068 86073315 -35184215 + MIRc SINE MIR 23 266 -2 2 1241 322 262 60 70 chr12 86074748 86074918 -35182612 + MIRc SINE MIR 17 179 -89 2 1241 645 236 86 86 chr12 86075692 86075854 -35181676 + B3A SINE B2 20 181 -14 2 1241 21 0 0 0 chr12 86075854 86075875 -35181655 + AT_rich Low_complexity Low_complexity 1 21 0 2 1241 38937 27 1 6 chr12 86076708 86077574 -35179956 - L1Md_A LINE L1 0 6582 5721 2 1241 4145 17 37 12 chr12 86077574 86078055 -35179475 + MT2_Mm LTR ERVL 1 493 0 2 1241 38937 11 2 8 chr12 86078055 86078916 -35178614 - L1Md_A LINE L1 -163 5720 4877 2 1241 1604 47 0 0 chr12 86078916 86079108 -35178422 + B2_Mm1a SINE B2 2 193 0 2 1241 38937 14 4 15 chr12 86079108 86083608 -35173922 - L1Md_A LINE L1 -1007 4876 410 2 1241 495 260 68 8 chr12 86083666 86083798 -35173732 - ID_B1 SINE B4 -7 217 78 2 1241 385 272 95 19 chr12 86083829 86083934 -35173596 - PB1D10 SINE Alu -2 115 3 2 1241 696 92 0 0 chr12 86083947 86084045 -35173485 - B1_Mur3 SINE Alu -6 143 46 2 1241 308 210 48 36 chr12 86084091 86084175 -35173355 + B1_Mur2 SINE Alu 60 144 -5 2 1241 252 0 0 0 chr12 86084828 86084856 -35172674 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1241 599 216 100 7 chr12 86084859 86084999 -35172531 - RSINE1 SINE B4 -11 154 2 2 1241 1504 43 0 60 chr12 86085964 86086164 -35171366 - B2_Mm2 SINE B2 -6 189 2 2 1241 782 239 57 21 chr12 86086193 86086376 -35171154 - B3 SINE B2 -1 215 26 2 1241 606 168 0 0 chr12 86086376 86086471 -35171059 + B1_Mm SINE Alu 3 97 -50 2 1241 1494 73 0 5 chr12 86086478 86086672 -35170858 - B2_Mm2 SINE B2 -2 193 1 2 1241 554 234 0 123 chr12 86086683 86086829 -35170701 - B1F SINE Alu -6 143 16 2 1241 579 208 50 8 chr12 86086792 86086913 -35170617 - B3A SINE B2 -70 128 3 2 1241 308 277 70 78 chr12 86087023 86087152 -35170378 - L1M5 LINE L1 -2946 3200 3073 2 1241 229 196 0 0 chr12 86087799 86087884 -35169646 + C-rich Low_complexity Low_complexity 1 85 0 2 1241 516 278 16 55 chr12 86088389 86088552 -35168978 - ID_B1 SINE B4 0 224 69 2 1241 490 210 0 0 chr12 86088695 86088776 -35168754 + ID_B1 SINE B4 135 215 -9 2 1241 1080 128 0 7 chr12 86088805 86088955 -35168575 + B1_Mur4 SINE Alu 1 149 -1 2 1241 292 297 44 99 chr12 86089085 86089358 -35168172 - L2b LINE L2 -197 3178 2921 2 1241 495 235 17 17 chr12 86089543 86089660 -35167870 + PB1D10 SINE Alu 1 117 0 2 1241 565 264 124 96 chr12 86089668 86089743 -35167787 + B4 SINE B4 1 81 -211 2 1241 897 146 42 0 chr12 86089743 86089887 -35167643 + B1_Mur4 SINE Alu 1 150 0 2 1241 607 239 68 121 chr12 86089907 86090097 -35167433 + B4A SINE B4 109 288 -4 2 1241 237 271 112 78 chr12 86090403 86090457 -35167073 + L2b LINE L2 3244 3299 -76 2 1241 180 0 0 0 chr12 86090457 86090477 -35167053 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1241 237 271 112 78 chr12 86090477 86090538 -35166992 + L2b LINE L2 3300 3363 -12 2 1241 782 158 31 0 chr12 86090564 86090691 -35166839 + B1_Mur3 SINE Alu 19 149 0 2 1241 273 250 86 17 chr12 86090832 86090925 -35166605 + PB1 SINE Alu 26 115 -34 2 1241 270 273 0 15 chr12 86091048 86091115 -35166415 - B3A SINE B2 -131 67 2 2 1241 1207 131 91 10 chr12 86091474 86091683 -35165847 + URR1A DNA MER1_type 1 226 0 2 1241 688 237 14 0 chr12 86092257 86092396 -35165134 + ID_B1 SINE B4 84 224 0 2 1241 207 176 0 0 chr12 86094305 86094339 -35163191 + CT-rich Low_complexity Low_complexity 3 36 0 2 1241 596 229 49 0 chr12 86094339 86094461 -35163069 - ID_B1 SINE B4 -13 211 84 2 1241 499 274 108 55 chr12 86094734 86094976 -35162554 - RMER20B LTR ERVK -108 408 131 2 1241 324 0 0 0 chr12 86094976 86095012 -35162518 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1241 499 262 111 62 chr12 86095012 86095054 -35162476 - RMER20B LTR ERVK -497 130 100 2 1241 933 191 71 0 chr12 86095190 86095358 -35162172 - B3 SINE B2 -36 180 1 3 1241 420 20 0 0 chr12 86095430 86095479 -35162051 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1241 320 272 157 75 chr12 86096136 86096295 -35161235 - MIR SINE MIR -52 210 39 3 1241 587 229 41 0 chr12 86096533 86096655 -35160875 + ID_B1 SINE B4 91 217 -7 3 1241 417 264 35 26 chr12 86096762 86096875 -35160655 - B1F SINE Alu -9 140 27 3 1241 216 184 0 0 chr12 86096908 86096946 -35160584 - PB1D10 SINE Alu -32 85 48 3 1241 244 238 15 45 chr12 86096967 86097033 -35160497 - PB1D10 SINE Alu -6 111 48 3 1241 807 215 46 17 chr12 86098446 86098621 -35158909 - B3 SINE B2 -10 206 27 3 1241 1206 41 0 7 chr12 86098622 86098770 -35158760 - B1_Mm SINE Alu 0 147 1 3 1241 383 348 57 0 chr12 86098773 86098914 -35158616 - B1F SINE Alu 0 149 1 3 1241 598 264 25 8 chr12 86098972 86099094 -35158436 - B1F2 SINE Alu -6 143 20 3 1241 579 287 36 29 chr12 86099094 86099112 -35158418 - ID_B1 SINE B4 -6 218 78 3 1241 1449 148 0 0 chr12 86099209 86099426 -35158104 + URR1B DNA MER1_type 5 221 -4 3 1241 493 307 43 7 chr12 86099561 86099702 -35157828 - B1F SINE Alu -1 148 3 3 1241 282 304 75 94 chr12 86099702 86099720 -35157810 - B4 SINE B4 -67 224 69 3 1241 508 240 51 65 chr12 86099790 86099928 -35157602 - B1F SINE Alu -1 148 13 3 1241 365 292 37 111 chr12 86099928 86099952 -35157578 - ID_B1 SINE B4 -2 222 73 3 1241 421 175 141 20 chr12 86099954 86100053 -35157477 - PB1D9 SINE Alu 0 120 10 3 1241 897 222 30 0 chr12 86100105 86100303 -35157227 - B3 SINE B2 -12 204 1 3 1241 1284 145 47 5 chr12 86100641 86100856 -35156674 - URR1B DNA MER1_type -1 224 1 3 1241 440 230 0 57 chr12 86100953 86101068 -35156462 + B1F1 SINE Alu 10 118 -2 3 1241 244 395 25 25 chr12 86101359 86101520 -35156010 + MIRb SINE MIR 30 190 -78 3 1241 342 372 8 37 chr12 86102732 86102866 -35154664 - RSINE1 SINE B4 -23 142 13 3 1241 1570 36 15 20 chr12 86102877 86103073 -35154457 - B2_Mm2 SINE B2 0 195 1 3 1241 899 257 19 10 chr12 86103203 86103411 -35154119 + B3 SINE B2 7 216 0 3 1241 263 196 0 51 chr12 86104018 86104077 -35153453 + MTB_Mm LTR MaLR 351 406 -1 3 1241 542 307 53 24 chr12 86104077 86104275 -35153255 - B4A SINE B4 -88 204 1 3 1241 653 271 54 34 chr12 86104445 86104651 -35152879 - B3A SINE B2 -9 207 8 3 1241 707 264 0 52 chr12 86104683 86104855 -35152675 - RSINE1 SINE B4 -1 164 2 3 1241 1360 164 4 18 chr12 86104872 86105101 -35152429 + URR1A DNA MER1_type 1 226 0 3 1241 227 338 15 0 chr12 86105101 86105169 -35152361 - B1_Mur1 SINE Alu -13 136 68 3 1241 919 48 167 0 chr12 86106453 86106579 -35150951 - B1_Mus2 SINE Alu 0 147 1 3 1241 521 292 85 57 chr12 86106606 86106889 -35150641 + B4 SINE B4 1 291 -1 3 1241 350 57 19 0 chr12 86106923 86106976 -35150554 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1241 1222 234 236 25 chr12 86107073 86107603 -35149927 + RMER13A LTR ERVK 18 659 -201 3 1241 902 150 7 20 chr12 86107737 86107887 -35149643 + B1_Mur3 SINE Alu 1 148 -1 3 1241 284 185 37 0 chr12 86107932 86107986 -35149544 - RSINE1 SINE B4 -108 57 2 3 1241 250 30 0 0 chr12 86108277 86108310 -35149220 + B3A SINE B2 2 34 -164 3 1241 439 275 37 0 chr12 86108311 86108420 -35149110 - RSINE1 SINE B4 -49 116 4 3 1241 294 50 0 0 chr12 86108953 86108993 -35148537 + (CATA)n Simple_repeat Simple_repeat 2 41 0 3 1241 772 273 91 0 chr12 86109380 86109578 -35147952 - B3 SINE B2 0 216 1 3 1241 297 0 0 0 chr12 86109589 86109622 -35147908 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 3 1241 1250 48 0 0 chr12 86109622 86109767 -35147763 - B1_Mus1 SINE Alu -3 145 1 3 1241 210 270 53 63 chr12 86110028 86110123 -35147407 + MIR SINE MIR 30 123 -139 3 1241 995 60 105 0 chr12 86111014 86111147 -35146383 + B1_Mus2 SINE Alu 1 147 0 3 1241 222 171 0 0 chr12 86111192 86111233 -35146297 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1241 448 273 125 59 chr12 86111259 86111411 -35146119 + RSINE1 SINE B4 4 165 0 3 1241 215 105 53 0 chr12 86111411 86111449 -35146081 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 3 1241 299 206 111 0 chr12 86111529 86111592 -35145938 + B1_Mur1 SINE Alu 43 112 -37 3 1241 727 130 20 67 chr12 86111628 86111784 -35145746 + B1_Mur3 SINE Alu 1 148 -1 3 1241 255 304 66 24 chr12 86111866 86111981 -35145549 + MIR SINE MIR 67 191 -85 3 1241 226 300 66 60 chr12 86112032 86112275 -35145255 + B4A SINE B4 48 292 0 3 1241 414 253 219 0 chr12 86112650 86112796 -35144734 - B3A SINE B2 -19 179 2 3 1241 251 246 62 0 chr12 86113406 86113471 -35144059 - PB1D10 SINE Alu -1 116 48 3 1241 23 54 0 0 chr12 86113936 86113973 -35143557 + GC_rich Low_complexity Low_complexity 1 37 0 3 1242 1307 125 0 5 chr12 86115067 86115252 -35142278 + B2_Mm2 SINE B2 2 185 -10 3 1242 248 77 26 0 chr12 86116144 86116183 -35141347 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 3 1242 348 284 55 9 chr12 86116184 86116294 -35141236 - PB1D10 SINE Alu 0 117 3 3 1242 230 189 0 19 chr12 86116302 86116336 -35141194 + polypyrimidine Low_complexity Low_complexity 21 54 0 3 1242 1054 123 6 11 chr12 86116336 86116517 -35141013 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1242 230 189 0 19 chr12 86116517 86116536 -35140994 + polypyrimidine Low_complexity Low_complexity 2 20 0 3 1242 597 112 138 0 chr12 86116648 86116764 -35140766 + URR1B DNA MER1_type 90 221 -4 3 1242 251 278 125 16 chr12 86116651 86116779 -35140751 - CYRA11_Mm Unknown Y-chromosome -315 302 161 3 1242 362 302 8 33 chr12 86116798 86116918 -35140612 - PB1D10 SINE Alu 0 117 1 3 1242 805 159 59 1 chr12 86117403 86117581 -35139949 - B2_Mm2 SINE B2 0 216 1 3 1242 1445 75 16 0 chr12 86117592 86117778 -35139752 - B2_Mm2 SINE B2 -5 190 2 3 1242 220 182 0 35 chr12 86118182 86118239 -35139291 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 3 1242 751 218 77 92 chr12 86118354 86118394 -35139136 + B3 SINE B2 4 42 -174 3 1242 467 185 53 53 chr12 86118394 86118508 -35139022 + PB1D9 SINE Alu 2 115 -5 3 1242 751 218 77 92 chr12 86118508 86118674 -35138856 + B3 SINE B2 43 207 -9 3 1242 577 289 26 21 chr12 86119623 86119814 -35137716 + B3A SINE B2 2 193 -5 3 1242 686 257 7 26 chr12 86119827 86119979 -35137551 + B1_Mur1 SINE Alu 1 149 0 3 1242 918 174 0 0 chr12 86120360 86120509 -35137021 + B1_Mur4 SINE Alu 2 150 0 3 1242 793 226 152 0 chr12 86120520 86120697 -35136833 - B3 SINE B2 -12 204 1 3 1242 261 0 0 0 chr12 86121108 86121137 -35136393 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1242 234 112 2 130 chr12 86121137 86121189 -35136341 - B1_Mur3 SINE Alu -13 137 91 3 1242 249 311 0 55 chr12 86121376 86121485 -35136045 - PB1 SINE Alu -19 108 6 3 1242 384 317 44 16 chr12 86121511 86121694 -35135836 - B3A SINE B2 -3 195 8 3 1242 350 250 52 30 chr12 86121722 86121861 -35135669 - B1F SINE Alu 0 149 9 3 1242 1119 145 15 10 chr12 86122042 86122244 -35135286 - MTC LTR MaLR -12 409 207 3 1242 236 360 105 0 chr12 86122299 86122452 -35135078 + L1MC LINE L1 5657 5825 -2057 3 1242 332 299 0 0 chr12 86122461 86122558 -35134972 - PB1D10 SINE Alu 0 117 21 3 1242 1231 42 0 0 chr12 86122598 86122740 -35134790 - B1_Mus2 SINE Alu -4 143 2 3 1242 341 282 68 0 chr12 86122784 86122887 -35134643 + PB1D10 SINE Alu 1 110 -7 3 1242 501 341 40 29 chr12 86123238 86123516 -35134014 - L1MC LINE L1 -2144 5738 5458 3 1242 350 246 0 14 chr12 86123552 86123626 -35133904 - ID SINE ID -148 76 4 3 1242 365 302 107 0 chr12 86123715 86123864 -35133666 + MIR SINE MIR 85 249 -13 3 1242 393 283 107 14 chr12 86127537 86127677 -35129853 + MIR SINE MIR 92 244 -18 3 1242 361 205 0 18 chr12 86127736 86127850 -35129680 + (CA)n Simple_repeat Simple_repeat 2 113 0 3 1242 975 136 14 7 chr12 86128486 86128634 -35128896 - B1_Mur4 SINE Alu 0 150 2 3 1242 617 200 49 56 chr12 86128644 86128787 -35128743 - B1F SINE Alu -7 142 1 3 1242 180 0 0 0 chr12 86129239 86129259 -35128271 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1242 1169 36 0 0 chr12 86129259 86129396 -35128134 - B1_Mus1 SINE Alu -10 138 2 3 1242 520 279 15 8 chr12 86133196 86133326 -35124204 - ID_B1 SINE B4 -4 220 90 3 1242 1488 123 18 0 chr12 86133464 86133684 -35123846 - URR1A DNA MER1_type -2 224 1 3 1242 531 263 8 0 chr12 86134215 86134333 -35123197 - ID_B1 SINE B4 -6 218 100 3 1242 198 71 0 0 chr12 86137118 86137146 -35120384 + (CAGAG)n Simple_repeat Simple_repeat 3 30 0 3 1242 239 294 0 56 chr12 86138446 86138518 -35119012 + L2c LINE L2 3318 3385 -2 3 1242 865 158 20 7 chr12 86141087 86141234 -35116296 - B1_Mur4 SINE Alu 0 150 2 3 1242 470 226 47 24 chr12 86142042 86142169 -35115361 + RSINE1 SINE B4 2 131 -34 3 1242 2270 157 11 90 chr12 86143818 86144274 -35113256 + MTC LTR MaLR 2 421 0 4 1242 399 41 0 0 chr12 86145865 86145914 -35111616 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 4 1242 208 305 171 0 chr12 86148431 86148513 -35109017 - MIRb SINE MIR -110 158 63 4 1242 822 145 14 7 chr12 86148708 86148854 -35108676 - B1_Mus2 SINE Alu 0 147 1 4 1242 318 316 0 0 chr12 86151228 86151307 -35106223 + ID4_ SINE ID 1 79 -4 4 1242 513 235 0 0 chr12 86151338 86151517 -35106013 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1242 2177 121 18 6 chr12 86152042 86152384 -35105146 + ORR1B1 LTR MaLR 48 393 -1 4 1242 563 244 0 16 chr12 86152819 86152940 -35104590 - PB1D9 SINE Alu 0 120 2 4 1242 1245 142 54 0 chr12 86153585 86153790 -35103740 + B3 SINE B2 1 216 0 4 1242 318 273 161 42 chr12 86154487 86154655 -35102875 - MIR SINE MIR -6 256 69 4 1242 181 335 171 5 chr12 86155509 86155719 -35101811 + L2c LINE L2 3049 3293 -94 4 1242 471 247 54 30 chr12 86157186 86157353 -35100177 + L1MA8 LINE L1 5863 6033 -258 4 1242 903 213 6 12 chr12 86157353 86157519 -35100011 + RSINE1 SINE B4 1 165 0 4 1242 1887 141 59 92 chr12 86157571 86157963 -35099567 + ORR1B1 LTR MaLR 16 394 0 4 1242 402 211 48 0 chr12 86157963 86158067 -35099463 + L1MA8 LINE L1 6044 6152 -139 4 1242 963 300 46 14 chr12 86158188 86158469 -35099061 - B4A SINE B4 -1 291 2 4 1242 1206 119 5 68 chr12 86158585 86158792 -35098738 + B2_Mm2 SINE B2 2 195 0 4 1242 257 317 58 29 chr12 86158799 86158903 -35098627 + ID_B1 SINE B4 79 185 -39 4 1242 456 222 20 20 chr12 86158810 86158911 -35098619 + PB1D7 SINE Alu 9 109 -11 4 1242 914 164 0 0 chr12 86158952 86159092 -35098438 + B1_Mus1 SINE Alu 3 142 -6 4 1242 515 278 6 41 chr12 86159533 86159702 -35097828 + RSINE1 SINE B4 3 165 0 4 1242 453 307 63 15 chr12 86159702 86159738 -35097792 + B3 SINE B2 2 216 0 4 1242 245 201 128 0 chr12 86159763 86159837 -35097693 + B1_Mur4 SINE Alu 2 90 -60 4 1242 248 130 22 0 chr12 86159853 86159899 -35097631 + GA-rich Low_complexity Low_complexity 2 48 0 4 1242 573 332 207 24 chr12 86160059 86160088 -35097442 - Charlie7 DNA MER1_type -1864 748 719 4 1242 458 219 43 26 chr12 86160088 86160205 -35097325 - PB1D7 SINE Alu 0 120 2 4 1242 573 332 207 24 chr12 86160205 86160755 -35096775 - Charlie7 DNA MER1_type -1894 718 63 4 1242 180 295 123 37 chr12 86161091 86161172 -35096358 - MIRc SINE MIR -59 209 122 4 1242 203 310 111 34 chr12 86161827 86161944 -35095586 + L2c LINE L2 3177 3302 -85 4 1242 239 312 14 99 chr12 86162373 86162515 -35095015 + MIRb SINE MIR 77 206 -62 4 1242 395 206 30 12 chr12 86162580 86162747 -35094783 + C-rich Low_complexity Low_complexity 5 174 0 4 1242 406 252 20 10 chr12 86162748 86162848 -35094682 + CT-rich Low_complexity Low_complexity 3 103 0 4 1242 272 193 53 0 chr12 86162848 86162905 -35094625 + MTE2a LTR MaLR 315 374 -5 4 1242 279 346 48 11 chr12 86164297 86164426 -35093104 + MIRb SINE MIR 78 209 -59 4 1242 471 262 0 19 chr12 86166130 86166235 -35091295 + RSINE1 SINE B4 34 136 -29 4 1242 21 0 0 0 chr12 86166237 86166258 -35091272 + AT_rich Low_complexity Low_complexity 1 21 0 4 1242 233 329 49 18 chr12 86166822 86166986 -35090544 + L2c LINE L2 3014 3182 -193 4 1242 387 127 0 0 chr12 86167387 86167450 -35090080 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1242 282 160 0 0 chr12 86167519 86167569 -35089961 + (CAT)n Simple_repeat Simple_repeat 1 50 0 4 1242 1005 258 48 4 chr12 86167587 86167836 -35089694 - MER2 DNA MER2_type -7 338 79 4 1242 483 48 0 0 chr12 86168058 86168120 -35089410 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1242 460 235 66 7 chr12 86168122 86168259 -35089271 - RSINE1 SINE B4 -20 145 1 4 1242 279 307 13 0 chr12 86168259 86168330 -35089200 - MER2 DNA MER2_type -272 73 2 4 1242 197 292 0 77 chr12 86168349 86168427 -35089103 - MIR SINE MIR -83 179 108 4 1242 269 327 43 43 chr12 86168783 86168898 -35088632 + L2c LINE L2 3272 3386 -1 4 1242 378 0 0 0 chr12 86168898 86168940 -35088590 + (ACTG)n Simple_repeat Simple_repeat 1 42 0 4 1242 474 18 0 0 chr12 86169063 86169118 -35088412 + (GGA)n Simple_repeat Simple_repeat 2 56 0 4 1242 1003 204 5 29 chr12 86169745 86169952 -35087578 - ID_B1 SINE B4 -21 203 2 4 1242 267 243 27 41 chr12 86171379 86171452 -35086078 - MIRb SINE MIR -132 136 65 4 1242 201 314 139 0 chr12 86173089 86173175 -35084355 + MIR3 SINE MIR 108 205 -3 4 1242 414 240 21 85 chr12 86173286 86173427 -35084103 - B1F SINE Alu -15 134 3 4 1242 21 0 0 0 chr12 86173537 86173558 -35083972 + AT_rich Low_complexity Low_complexity 1 21 0 4 1242 554 204 77 7 chr12 86173942 86174085 -35083445 + RSINE1 SINE B4 3 155 -10 4 1242 566 239 15 15 chr12 86174209 86174345 -35083185 - B4A SINE B4 -6 286 151 4 1242 381 136 0 0 chr12 86174387 86174453 -35083077 + (GGA)n Simple_repeat Simple_repeat 2 67 0 4 1242 285 75 0 0 chr12 86174530 86174570 -35082960 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 4 1242 23 68 0 0 chr12 86174875 86174919 -35082611 + AT_rich Low_complexity Low_complexity 1 44 0 4 1242 972 91 0 158 chr12 86174919 86174959 -35082571 + B2_Mm2 SINE B2 1 40 -155 4 1242 500 209 23 0 chr12 86174959 86175088 -35082442 + Lx4B LINE L1 6927 7058 0 4 1242 972 91 0 158 chr12 86175088 86175268 -35082262 + B2_Mm2 SINE B2 41 186 -9 4 1242 657 233 35 50 chr12 86175567 86175766 -35081764 - B3A SINE B2 -1 197 2 4 1242 226 355 27 9 chr12 86175981 86176092 -35081438 - MIRb SINE MIR -129 139 27 4 1242 236 284 24 47 chr12 86177837 86177922 -35079608 - Charlie18a DNA MER1_type -6 336 254 4 1242 665 230 23 35 chr12 86177952 86178123 -35079407 - B3A SINE B2 -3 195 27 4 1242 2077 119 3 88 chr12 86178127 86178514 -35079016 + ORR1B1 LTR MaLR 41 394 0 4 1242 285 244 33 22 chr12 86178870 86178962 -35078568 + MTEb LTR MaLR 279 371 -8 4 1242 406 226 98 0 chr12 86179613 86179715 -35077815 + PB1D9 SINE Alu 3 114 -6 4 1242 1068 69 14 0 chr12 86179725 86179870 -35077660 + B1_Mus1 SINE Alu 2 148 0 4 1242 324 0 0 0 chr12 86179964 86180000 -35077530 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1242 186 43 0 0 chr12 86180260 86180283 -35077247 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 4 1242 959 99 7 0 chr12 86180284 86180426 -35077104 - B1_Mus1 SINE Alu 0 148 6 4 1242 21 57 0 0 chr12 86180434 86180469 -35077061 + AT_rich Low_complexity Low_complexity 1 35 0 4 1242 340 252 56 62 chr12 86180476 86180637 -35076893 + L1MCa LINE L1 1825 1984 -4524 4 1242 225 0 0 0 chr12 86180940 86180965 -35076565 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 1242 1419 179 24 41 chr12 86180965 86181248 -35076282 + MTD LTR MaLR 20 297 -122 4 1242 230 250 50 0 chr12 86181700 86181760 -35075770 + L1MCa LINE L1 5651 5713 -2344 4 1242 1037 239 97 14 chr12 86182420 86182709 -35074821 + MER58B DNA MER1_type 29 341 0 4 1242 245 369 16 74 chr12 86182873 86183116 -35074414 - MIRb SINE MIR -15 253 25 4 1242 282 167 0 0 chr12 86183120 86183168 -35074362 - MIRc SINE MIR -114 154 107 4 1242 1184 34 0 0 chr12 86183293 86183440 -35074090 + B1_Mus2 SINE Alu 1 147 0 4 1242 288 0 0 0 chr12 86183440 86183472 -35074058 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1242 318 252 0 124 chr12 86183548 86183661 -35073869 - ID_B1 SINE B4 -24 200 102 4 1242 758 312 52 78 chr12 86183874 86184076 -35073454 + Charlie22a DNA MER1_type 94 311 -180 4 1242 492 18 0 0 chr12 86184076 86184133 -35073397 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1242 758 312 52 78 chr12 86184133 86184278 -35073252 + Charlie22a DNA MER1_type 312 432 -59 4 1242 367 291 101 18 chr12 86185557 86185725 -35071805 - MIRb SINE MIR -20 248 67 4 1242 864 325 45 42 chr12 86186604 86186986 -35070544 + Tigger7 DNA MER2_type 1 383 -2108 4 1242 754 300 34 67 chr12 86186987 86187284 -35070246 + B4 SINE B4 6 292 0 4 1242 471 279 128 0 chr12 86187316 86187495 -35070035 + Tigger7 DNA MER2_type 360 561 -1930 4 1242 939 119 0 0 chr12 86188109 86188285 -35069245 + (TG)n Simple_repeat Simple_repeat 2 177 0 4 1242 219 85 128 0 chr12 86188286 86188333 -35069197 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 4 1242 246 62 0 0 chr12 86190045 86190077 -35067453 + (TGG)n Simple_repeat Simple_repeat 1 32 0 4 1242 798 100 0 0 chr12 86190151 86190291 -35067239 + (CTGGGG)n Simple_repeat Simple_repeat 2 141 0 4 1242 601 219 17 0 chr12 86191116 86191235 -35066295 - B1_Mur1 SINE Alu -18 131 11 4 1242 350 297 41 41 chr12 86191131 86191254 -35066276 - B4 SINE B4 -89 203 81 4 1242 200 288 91 25 chr12 86192089 86192210 -35065320 - MIRb SINE MIR -113 155 27 4 1242 579 177 0 0 chr12 86194059 86194189 -35063341 + (TG)n Simple_repeat Simple_repeat 1 130 0 4 1242 311 179 0 18 chr12 86194190 86194247 -35063283 - HAL1-3A_ME LINE L1 -828 2030 1975 4 1242 669 158 0 0 chr12 86194247 86194386 -35063144 + (TG)n Simple_repeat Simple_repeat 2 140 0 4 1242 303 28 0 0 chr12 86195315 86195351 -35062179 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 4 1242 1141 192 19 0 chr12 86195653 86195867 -35061663 + URR1B DNA MER1_type 8 225 0 4 1242 981 316 37 88 chr12 86196714 86196904 -35060626 + MT2A LTR ERVL 1 180 -353 4 1242 459 0 0 0 chr12 86196904 86196955 -35060575 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1242 981 299 62 64 chr12 86196955 86197282 -35060248 + MT2A LTR ERVL 181 538 -16 4 1242 1077 125 95 0 chr12 86197287 86197487 -35060043 - URR1A DNA MER1_type -6 220 2 4 1242 321 306 147 0 chr12 86197910 86198080 -35059450 - MIRb SINE MIR -60 208 14 4 1242 2241 123 10 69 chr12 86198604 86199022 -35058508 - ORR1B1 LTR MaLR 0 394 2 4 1242 300 53 0 0 chr12 86200167 86200205 -35057325 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1242 535 295 67 46 chr12 86200262 86200546 -35056984 - B4A SINE B4 -2 290 1 4 1242 188 333 0 65 chr12 86200568 86200645 -35056885 - L2 LINE L2 -1866 1553 1482 5 1242 588 259 19 6 chr12 86200679 86200838 -35056692 - RSINE1 SINE B4 -1 164 4 5 1242 186 43 0 0 chr12 86201099 86201122 -35056408 + (CTG)n Simple_repeat Simple_repeat 1 23 0 5 1242 288 0 0 0 chr12 86201122 86201154 -35056376 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1242 996 113 0 0 chr12 86201158 86201300 -35056230 - B1_Mur4 SINE Alu -8 142 1 5 1242 1144 80 6 6 chr12 86201306 86201469 -35056061 - B2_Mm2 SINE B2 -31 164 2 5 1242 204 320 61 10 chr12 86202107 86202205 -35055325 + MIR SINE MIR 16 118 -90 5 1242 753 281 10 24 chr12 86202321 86202529 -35055001 - MER3 DNA MER1_type -2 207 3 5 1242 202 266 31 0 chr12 86204356 86204420 -35053110 - L2 LINE L2 -1007 2412 2347 5 1242 189 337 111 12 chr12 86204468 86204639 -35052891 - MIR SINE MIR -54 208 21 5 1242 268 100 0 0 chr12 86205408 86205458 -35052072 + B3 SINE B2 167 216 0 5 1242 316 312 43 7 chr12 86207174 86207313 -35050217 + MER5A1 DNA MER1_type 4 147 -19 5 1242 211 267 66 11 chr12 86207472 86207563 -35049967 + MIR SINE MIR 46 141 -67 5 1242 234 277 92 0 chr12 86207574 86207639 -35049891 + ID4_ SINE ID 3 73 -10 5 1242 956 105 7 0 chr12 86207645 86207797 -35049733 + (GGA)n Simple_repeat Simple_repeat 2 154 0 5 1242 228 241 33 33 chr12 86207806 86207896 -35049634 - YREP_Mm Unknown Unknown -1500 312 223 5 1242 415 245 32 0 chr12 86207823 86207917 -35049613 + PB1D9 SINE Alu 23 119 -1 5 1242 1150 41 0 13 chr12 86209052 86209201 -35048329 + B1_Mus2 SINE Alu 1 147 0 5 1242 212 256 304 15 chr12 86209838 86209973 -35047557 + MIRb SINE MIR 20 193 -75 5 1242 279 191 3 73 chr12 86210022 86210093 -35047437 + B1F SINE Alu 83 148 -1 5 1242 369 213 0 0 chr12 86210093 86210201 -35047329 + (CA)n Simple_repeat Simple_repeat 1 108 0 5 1242 210 279 49 0 chr12 86210224 86210285 -35047245 - MIRc SINE MIR -138 130 67 5 1242 261 0 0 0 chr12 86210329 86210358 -35047172 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1242 498 17 0 0 chr12 86210358 86210416 -35047114 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1242 1152 75 0 0 chr12 86210730 86210877 -35046653 + B1_Mus2 SINE Alu 1 147 0 5 1242 339 312 87 11 chr12 86212784 86213050 -35044480 + L1ME3B LINE L1 5710 5995 -245 5 1242 360 293 89 71 chr12 86213130 86213299 -35044231 + Lx5 LINE L1 6879 7050 0 5 1242 379 217 43 21 chr12 86213423 86213517 -35044013 + RSINE1 SINE B4 2 97 -68 5 1242 3205 35 2 12 chr12 86213565 86213965 -35043565 + MTA_Mm LTR MaLR 1 396 0 5 1242 671 90 10 0 chr12 86214114 86214214 -35043316 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 5 1242 824 185 7 0 chr12 86214235 86214381 -35043149 - B1_Mus1 SINE Alu 0 148 2 5 1242 200 279 71 29 chr12 86214383 86214453 -35043077 + L2a LINE L2 3334 3406 -20 5 1242 351 0 0 0 chr12 86214466 86214505 -35043025 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1242 210 160 0 20 chr12 86214505 86214549 -35042981 + A-rich Low_complexity Low_complexity 9 51 0 5 1242 450 36 0 0 chr12 86214903 86214959 -35042571 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1242 218 282 237 0 chr12 86215525 86215681 -35041849 - L2a LINE L2 -26 3400 3208 5 1242 21 0 0 0 chr12 86216319 86216340 -35041190 + GC_rich Low_complexity Low_complexity 1 21 0 5 1242 549 202 107 15 chr12 86218901 86219032 -35038498 - B1_Mm SINE Alu 0 147 5 5 1242 22 35 0 0 chr12 86219048 86219077 -35038453 + AT_rich Low_complexity Low_complexity 1 29 0 5 1242 499 264 104 0 chr12 86219105 86219268 -35038262 - B3A SINE B2 -18 180 1 5 1242 234 0 0 0 chr12 86219650 86219676 -35037854 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1242 768 275 46 156 chr12 86220286 86220534 -35036996 - B4 SINE B4 0 292 81 5 1242 216 0 0 0 chr12 86220534 86220558 -35036972 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 5 1242 768 275 46 156 chr12 86220558 86220636 -35036894 - B4 SINE B4 -212 80 2 5 1242 459 0 0 0 chr12 86221460 86221511 -35036019 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1242 280 345 72 63 chr12 86221602 86221691 -35035839 - MIRb SINE MIR -5 263 166 5 1242 767 174 97 186 chr12 86221691 86221938 -35035592 + URR1B DNA MER1_type 1 225 0 5 1242 280 345 72 63 chr12 86221938 86222071 -35035459 - MIRb SINE MIR -103 165 39 5 1242 196 300 20 0 chr12 86223118 86223168 -35034362 + MIRb SINE MIR 113 163 -105 5 1242 491 281 47 20 chr12 86223243 86223392 -35034138 - MIRb SINE MIR -24 244 92 5 1242 340 259 78 61 chr12 86223808 86223923 -35033607 - MIRb SINE MIR -149 119 3 5 1242 392 243 57 0 chr12 86224133 86224180 -35033350 + HAL1-2a_MD LINE L1 2343 2392 -632 5 1242 892 111 0 11 chr12 86224180 86224362 -35033168 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1242 392 243 57 0 chr12 86224362 86224454 -35033076 + HAL1-2a_MD LINE L1 2393 2489 -535 5 1242 782 128 0 6 chr12 86224457 86224630 -35032900 + (TCC)n Simple_repeat Simple_repeat 2 173 0 5 1242 622 150 0 12 chr12 86224604 86224676 -35032854 + (CAT)n Simple_repeat Simple_repeat 3 74 0 5 1242 897 128 0 0 chr12 86224676 86224856 -35032674 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1242 622 150 0 12 chr12 86224856 86224874 -35032656 + (CAT)n Simple_repeat Simple_repeat 3 20 0 5 1242 970 100 0 11 chr12 86224874 86225056 -35032474 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1242 622 164 0 12 chr12 86225056 86225167 -35032363 + (CAT)n Simple_repeat Simple_repeat 1 109 0 5 1242 1050 122 0 0 chr12 86225167 86225347 -35032183 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1242 185 208 0 13 chr12 86225347 86225400 -35032130 + (CAT)n Simple_repeat Simple_repeat 3 55 0 5 1242 652 224 75 0 chr12 86225433 86225567 -35031963 - B1_Mur1 SINE Alu -1 148 5 5 1242 203 280 29 106 chr12 86226621 86226725 -35030805 + L2c LINE L2 2820 2915 -504 5 1242 190 292 264 0 chr12 86226792 86226898 -35030632 + L2c LINE L2 3026 3159 -228 5 1242 197 286 94 12 chr12 86227639 86227724 -35029806 + MIR SINE MIR 36 127 -81 5 1242 516 263 16 54 chr12 86227825 86228010 -35029520 - MIR3 SINE MIR -12 196 19 5 1242 264 214 26 79 chr12 86228473 86228549 -35028981 - L2a LINE L2 -6 3420 3349 5 1242 676 268 75 142 chr12 86228568 86228942 -35028588 + ORR1E LTR MaLR 5 353 -6 5 1242 671 242 34 0 chr12 86229482 86229631 -35027899 - B4 SINE B4 -134 158 5 5 1242 739 169 8 17 chr12 86230089 86230209 -35027321 + PB1D9 SINE Alu 2 120 0 5 1242 368 247 240 50 chr12 86230513 86230565 -35026965 + ID_B1 SINE B4 12 224 0 5 1242 623 125 3 21 chr12 86230565 86230692 -35026838 + B1_Mus2 SINE Alu 30 149 0 5 1242 207 69 0 0 chr12 86230694 86230723 -35026807 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1242 972 269 116 7 chr12 86231005 86231290 -35026240 - MTE2b LTR MaLR 0 379 64 5 1242 259 307 11 43 chr12 86231303 86231395 -35026135 - MTE2b LTR MaLR -287 92 4 5 1242 262 310 59 20 chr12 86231525 86231627 -35025903 - MER112 DNA MER1_type -134 127 22 5 1242 1177 61 0 20 chr12 86233718 86233868 -35023662 + B1_Mus1 SINE Alu 2 148 0 5 1242 839 157 7 48 chr12 86234025 86234038 -35023492 - B1_Mus1 SINE Alu -5 143 137 5 1242 524 29 29 0 chr12 86234038 86234107 -35023423 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 5 1242 839 157 7 48 chr12 86234107 86234240 -35023290 - B1_Mus1 SINE Alu -12 136 3 5 1242 447 252 50 75 chr12 86234240 86234298 -35023232 - MT2B LTR ERVL -445 156 103 5 1242 359 276 24 90 chr12 86234922 86235089 -35022441 - MLT1K LTR MaLR -439 156 1 5 1242 460 289 43 86 chr12 86235713 86235876 -35021654 + B4A SINE B4 66 221 -71 5 1242 966 121 7 0 chr12 86235742 86235882 -35021648 + B1_Mur2 SINE Alu 9 149 0 5 1242 397 301 168 65 chr12 86236055 86236425 -35021105 - L2b LINE L2 -11 3376 2969 5 1242 219 111 284 60 chr12 86236637 86236704 -35020826 + PB1D10 SINE Alu 36 117 0 5 1242 1089 168 70 15 chr12 86236764 86236964 -35020566 - B3 SINE B2 0 216 6 5 1242 251 289 111 40 chr12 86237995 86238121 -35019409 + MIRm SINE MIR 25 159 -117 5 1242 809 266 240 4 chr12 86238130 86238405 -35019125 + MER2 DNA MER2_type 3 342 -3 5 1242 369 321 9 9 chr12 86239062 86239175 -35018355 - MIR SINE MIR -34 228 116 5 1242 902 243 100 24 chr12 86239457 86239706 -35017824 + B4A SINE B4 3 270 -22 5 1242 457 319 44 0 chr12 86239825 86239960 -35017570 + B1F SINE Alu 3 143 -6 5 1242 31 44 0 0 chr12 86239978 86240023 -35017507 + AT_rich Low_complexity Low_complexity 1 45 0 5 1242 980 124 14 0 chr12 86240065 86240210 -35017320 + B1_Mus2 SINE Alu 1 147 0 5 1242 312 70 0 0 chr12 86240274 86240317 -35017213 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1242 2473 186 50 68 chr12 86240405 86240517 -35017013 - Lx5 LINE L1 -3 7047 6919 5 1242 378 0 0 0 chr12 86240517 86240559 -35016971 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1242 2473 186 50 68 chr12 86240559 86241030 -35016500 - Lx5 LINE L1 -132 6918 6475 5 1242 305 269 111 0 chr12 86241045 86241153 -35016377 - MIRb SINE MIR -60 208 89 5 1242 362 266 36 27 chr12 86241268 86241380 -35016150 - PB1D10 SINE Alu 0 117 5 5 1242 324 319 75 50 chr12 86241866 86242067 -35015463 - MIRb SINE MIR -62 206 1 5 1242 781 222 67 17 chr12 86242195 86242352 -35015178 + B3 SINE B2 1 165 -51 5 1242 183 80 0 0 chr12 86242352 86242377 -35015153 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1242 781 222 67 17 chr12 86242377 86242398 -35015132 + B3 SINE B2 166 188 -28 5 1242 448 259 123 20 chr12 86243884 86244030 -35013500 + MER5A1 DNA MER1_type 3 163 -3 5 1242 675 317 43 31 chr12 86244132 86244549 -35012981 - L1MC4a LINE L1 -3 7879 7458 5 1242 920 173 6 0 chr12 86244666 86244845 -35012685 + CT-rich Low_complexity Low_complexity 1 180 0 5 1242 751 282 119 30 chr12 86244851 86245253 -35012277 - L1MC4a LINE L1 -605 7277 6840 5 1243 233 213 0 0 chr12 86245917 86245978 -35011552 + A-rich Low_complexity Low_complexity 1 61 0 5 1243 914 133 0 0 chr12 86245979 86246107 -35011423 - B1_Mur3 SINE Alu -16 133 6 6 1243 231 284 84 47 chr12 86246281 86246388 -35011142 + MLT1K LTR MaLR 370 480 -115 6 1243 415 169 75 11 chr12 86246391 86246485 -35011045 + B1F SINE Alu 5 98 -51 6 1243 477 0 0 0 chr12 86246656 86246709 -35010821 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1243 806 128 0 27 chr12 86246710 86246895 -35010635 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1243 279 71 0 0 chr12 86247621 86247663 -35009867 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1243 221 314 17 8 chr12 86248348 86248467 -35009063 + CT-rich Low_complexity Low_complexity 1 120 0 6 1243 2249 58 92 16 chr12 86249975 86250292 -35007238 + MTA_Mm LTR MaLR 1 341 -55 6 1243 3314 45 35 7 chr12 86250292 86250716 -35006814 + RLTR10C LTR ERVK 1 436 0 6 1243 495 17 17 0 chr12 86250716 86250776 -35006754 + MTA_Mm LTR MaLR 340 400 0 6 1243 251 288 61 26 chr12 86250928 86251042 -35006488 + LTR16E2 LTR ERVL 451 568 0 6 1243 268 317 140 18 chr12 86251484 86251648 -35005882 + Arthur1 DNA Tip100 3751 3934 -13 6 1243 330 320 164 18 chr12 86251758 86252038 -35005492 - Arthur1 DNA Tip100 -3626 321 1 6 1243 311 330 125 10 chr12 86252371 86252579 -35004951 + L1MC4 LINE L1 1130 1361 -4854 6 1243 293 299 52 0 chr12 86252887 86252964 -35004566 + ID2 SINE ID 1 81 -2 6 1243 797 279 135 4 chr12 86252974 86253226 -35004304 + B4A SINE B4 1 285 -7 6 1243 182 366 85 18 chr12 86254181 86254345 -35003185 + MIRb SINE MIR 78 252 -16 6 1243 528 195 17 58 chr12 86257686 86257806 -34999724 + PB1D9 SINE Alu 1 115 -5 6 1243 322 260 13 25 chr12 86258295 86258374 -34999156 - PB1 SINE Alu -49 78 1 6 1243 551 327 23 51 chr12 86258400 86258577 -34998953 - B3A SINE B2 -19 179 8 6 1243 1197 74 0 7 chr12 86258671 86258820 -34998710 + B1_Mus1 SINE Alu 1 148 0 6 1243 216 0 0 0 chr12 86262457 86262481 -34995049 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1243 501 17 0 0 chr12 86262510 86262568 -34994962 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1243 369 308 19 9 chr12 86262575 86262680 -34994850 + RSINE1 SINE B4 20 125 -40 6 1243 204 352 32 32 chr12 86262773 86262867 -34994663 + MER5B DNA MER1_type 84 177 -1 6 1243 351 65 0 0 chr12 86263079 86263125 -34994405 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1243 278 77 35 88 chr12 86263625 86263682 -34993848 - B1_Mur4 SINE Alu 0 150 97 6 1243 1164 51 0 7 chr12 86263833 86263972 -34993558 + B1_Mm SINE Alu 1 138 -9 6 1243 183 42 0 0 chr12 86263972 86263996 -34993534 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1243 184 292 117 53 chr12 86264138 86264232 -34993298 + L2b LINE L2 3240 3339 -36 6 1243 265 93 23 0 chr12 86264397 86264440 -34993090 + B3 SINE B2 159 202 -14 6 1243 435 250 176 0 chr12 86264625 86264761 -34992769 + RSINE1 SINE B4 2 161 -4 6 1243 601 222 26 0 chr12 86265981 86266098 -34991432 - PB1D9 SINE Alu 0 120 1 6 1243 664 195 8 15 chr12 86266275 86266405 -34991125 + B1_Mur2 SINE Alu 21 149 0 6 1243 297 280 48 102 chr12 86266279 86266426 -34991104 + B4 SINE B4 110 248 -44 6 1243 1029 170 80 0 chr12 86266873 86267073 -34990457 + B3 SINE B2 1 216 0 6 1243 21 0 0 0 chr12 86267075 86267096 -34990434 + AT_rich Low_complexity Low_complexity 1 21 0 6 1243 253 307 43 70 chr12 86268043 86268186 -34989344 - MIRm SINE MIR -83 179 52 6 1243 780 205 56 0 chr12 86269228 86269389 -34988141 + RMER1B Other Other 47 216 -850 6 1243 1110 112 11 11 chr12 86269386 86269567 -34987963 + RMER1B Other Other 687 867 -199 6 1243 1211 126 11 0 chr12 86269567 86269742 -34987788 + B2_Mm1t SINE B2 1 177 -16 6 1243 305 88 394 19 chr12 86269789 86269893 -34987637 + B2_Mm2 SINE B2 47 189 -6 6 1243 858 168 61 84 chr12 86269893 86270107 -34987423 + RMER1B Other Other 858 1066 0 6 1243 244 372 0 0 chr12 86270112 86270198 -34987332 + PB1D10 SINE Alu 3 88 -29 6 1243 423 0 0 0 chr12 86270281 86270328 -34987202 + (TTCTC)n Simple_repeat Simple_repeat 3 49 0 6 1243 24 53 0 0 chr12 86270340 86270378 -34987152 + AT_rich Low_complexity Low_complexity 1 38 0 6 1243 284 167 14 0 chr12 86271611 86271683 -34985847 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1243 619 243 72 0 chr12 86271687 86271839 -34985691 - RSINE1 SINE B4 0 165 3 6 1243 471 238 57 73 chr12 86271950 86272127 -34985403 - B4A SINE B4 -118 174 1 6 1243 619 256 22 0 chr12 86273117 86273254 -34984276 - B1F SINE Alu -9 140 1 6 1243 242 140 190 17 chr12 86273291 86273349 -34984181 + ORR1A3 LTR MaLR 1 68 -258 6 1243 1158 52 0 0 chr12 86273447 86273583 -34983947 + B1_Mm SINE Alu 3 138 -9 6 1243 229 26 53 0 chr12 86273583 86273621 -34983909 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1243 1538 63 5 0 chr12 86273621 86273812 -34983718 + B2_Mm1t SINE B2 2 193 0 6 1243 1143 68 7 0 chr12 86274059 86274205 -34983325 - B1_Mus1 SINE Alu 0 148 2 6 1243 273 182 43 57 chr12 86274367 86274437 -34983093 + RLTR25A LTR ERVK 504 572 -531 6 1243 581 149 0 11 chr12 86274387 86274482 -34983048 + B1_Mus2 SINE Alu 49 142 -5 6 1243 648 140 0 0 chr12 86274482 86274589 -34982941 + (GGGA)n Simple_repeat Simple_repeat 1 107 0 6 1243 625 211 90 0 chr12 86276250 86276383 -34981147 + B1_Mur2 SINE Alu 5 149 0 6 1243 252 294 66 78 chr12 86276399 86276565 -34980965 + RSINE1 SINE B4 2 165 0 6 1243 927 146 7 0 chr12 86276745 86276889 -34980641 + B1_Mus1 SINE Alu 2 146 -2 6 1243 1558 258 112 39 chr12 86277033 86277636 -34979894 + L1MD1 LINE L1 4488 5130 -1016 6 1243 297 0 0 0 chr12 86277636 86277669 -34979861 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1243 1681 240 136 24 chr12 86277669 86278313 -34979217 + L1MD1 LINE L1 5131 5868 -374 6 1243 323 161 72 103 chr12 86278380 86278477 -34979053 - PB1D10 SINE Alu -1 116 23 6 1243 395 239 0 102 chr12 86278413 86278511 -34979019 - ID_B1 SINE B4 -57 167 80 6 1243 5144 57 0 2 chr12 86278537 86279173 -34978357 + L1Md_F2 LINE L1 5948 6582 0 6 1243 457 272 63 155 chr12 86279173 86279322 -34978208 + L1MD1 LINE L1 5953 6069 -173 6 1243 792 190 206 6 chr12 86279322 86279502 -34978028 - B3 SINE B2 0 216 1 6 1243 457 272 63 155 chr12 86279502 86279669 -34977861 + L1MD1 LINE L1 6070 6240 -2 6 1243 435 238 19 0 chr12 86280352 86280457 -34977073 + RSINE1 SINE B4 36 142 -23 6 1243 588 258 204 29 chr12 86280520 86280932 -34976598 + L1MB8 LINE L1 5680 6163 -15 6 1243 274 231 246 8 chr12 86281787 86281905 -34975625 - MER58B DNA MER1_type -9 332 187 6 1243 585 200 82 30 chr12 86281923 86282057 -34975473 + B1_Mur2 SINE Alu 2 142 -7 6 1243 625 174 35 0 chr12 86282175 86282290 -34975240 - B1_Mur2 SINE Alu -7 142 24 6 1243 367 288 15 22 chr12 86282294 86282429 -34975101 - ID_B1 SINE B4 0 224 91 6 1243 1082 128 0 11 chr12 86283020 86283041 -34974489 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 6 1243 1170 117 0 0 chr12 86283041 86283220 -34974310 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 6 1243 1082 128 0 11 chr12 86283220 86283380 -34974150 + (GGGA)n Simple_repeat Simple_repeat 1 160 0 6 1243 1200 111 0 0 chr12 86283380 86283560 -34973970 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 1243 180 0 0 0 chr12 86283560 86283580 -34973950 + (CGGA)n Simple_repeat Simple_repeat 2 21 0 6 1243 265 258 33 22 chr12 86283715 86283806 -34973724 + MER58B DNA MER1_type 247 338 -3 6 1243 216 303 126 31 chr12 86283939 86284141 -34973389 + L2a LINE L2 3144 3425 -1 6 1243 334 287 0 50 chr12 86285493 86285614 -34971916 + MIRb SINE MIR 91 205 -63 6 1243 1438 296 63 30 chr12 86286507 86287078 -34970452 + Lx8 LINE L1 6683 7272 -201 6 1243 27 29 0 0 chr12 86287091 86287125 -34970405 + AT_rich Low_complexity Low_complexity 1 34 0 6 1243 710 269 119 24 chr12 86287408 86287659 -34969871 + B4A SINE B4 1 275 -17 6 1243 2080 72 12 59 chr12 86287674 86288011 -34969519 - ORR1A4 LTR MaLR -8 321 1 6 1243 236 267 67 0 chr12 86288226 86288301 -34969229 - ID4 SINE ID -2 81 2 6 1243 788 194 0 14 chr12 86288311 86288457 -34969073 - B1_Mur2 SINE Alu -1 148 5 6 1243 628 243 54 27 chr12 86288813 86288999 -34968531 - RMER30 DNA MER1_type -3 199 9 6 1243 890 240 57 98 chr12 86289305 86289759 -34967771 - RLTR12B LTR ERVK -143 425 1 6 1243 1132 61 54 6 chr12 86290272 86290438 -34967092 + B2_Mm2 SINE B2 2 175 -20 6 1243 1446 75 27 0 chr12 86291194 86291382 -34966148 - B2_Mm2 SINE B2 -2 193 1 6 1243 1337 101 16 16 chr12 86291392 86291583 -34965947 - B2_Mm2 SINE B2 -4 191 1 6 1243 182 151 55 0 chr12 86291693 86291766 -34965764 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 1243 198 103 0 0 chr12 86292094 86292123 -34965407 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1243 207 0 0 0 chr12 86292395 86292418 -34965112 + (CCA)n Simple_repeat Simple_repeat 1 23 0 6 1243 260 254 0 53 chr12 86292907 86292982 -34964548 + PB1D10 SINE Alu 6 76 -41 6 1243 200 279 0 0 chr12 86293311 86293354 -34964176 - MIR SINE MIR -212 50 8 6 1243 715 271 32 0 chr12 86293786 86293974 -34963556 + B3A SINE B2 3 196 -2 6 1243 29 28 0 0 chr12 86293974 86294010 -34963520 + AT_rich Low_complexity Low_complexity 1 36 0 6 1243 946 131 28 22 chr12 86294017 86294196 -34963334 + B2_Mm2 SINE B2 7 186 -9 6 1243 356 192 12 25 chr12 86294280 86294360 -34963170 - ID_B1 SINE B4 0 224 146 6 1243 431 96 159 5 chr12 86294387 86294501 -34963029 - B2_Mm2 SINE B2 -1 194 46 6 1243 1317 99 0 16 chr12 86294528 86294712 -34962818 - B2_Mm2 SINE B2 -14 181 1 7 1243 666 111 0 0 chr12 86294713 86294803 -34962727 - 4.5SRNA scRNA scRNA -3 91 2 7 1243 354 45 0 0 chr12 86294827 86294871 -34962659 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1243 561 238 136 0 chr12 86294879 86295026 -34962504 - B3A SINE B2 -31 167 1 7 1243 300 282 155 39 chr12 86295150 86295279 -34962251 - ID_B1 SINE B4 0 224 81 7 1243 277 252 35 7 chr12 86295294 86295438 -34962092 + ORR1B1-int LTR MaLR 607 754 -755 7 1243 1048 49 21 0 chr12 86295335 86295477 -34962053 + B1_Mur4 SINE Alu 6 150 0 7 1243 386 287 0 9 chr12 86296191 86296300 -34961230 - PB1D10 SINE Alu -9 108 1 7 1243 968 205 42 47 chr12 86296506 86296721 -34960809 - B3 SINE B2 0 216 3 7 1243 1177 35 14 0 chr12 86297051 86297195 -34960335 + B1_Mm SINE Alu 2 147 0 7 1243 221 118 20 0 chr12 86297196 86297247 -34960283 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 7 1243 221 263 0 57 chr12 86297315 86297420 -34960110 - L3b LINE CR1 -381 101 3 7 1243 202 139 0 27 chr12 86298166 86298203 -34959327 + T-rich Low_complexity Low_complexity 5 40 0 7 1243 545 201 59 7 chr12 86298769 86298904 -34958626 + B3A SINE B2 15 156 -42 7 1243 26 64 0 0 chr12 86298919 86298966 -34958564 + AT_rich Low_complexity Low_complexity 1 47 0 7 1243 263 310 177 0 chr12 86299551 86299709 -34957821 - MIR SINE MIR -62 200 15 7 1243 30 27 0 0 chr12 86299850 86299887 -34957643 + AT_rich Low_complexity Low_complexity 1 37 0 7 1243 233 316 25 25 chr12 86300194 86300275 -34957255 + AluG_3 SINE Alu 139 219 -92 7 1243 875 228 30 20 chr12 86300317 86300518 -34957012 + B3 SINE B2 4 206 -10 7 1243 481 199 31 24 chr12 86300804 86300926 -34956604 - B1_Mm SINE Alu -2 145 4 7 1243 880 216 45 5 chr12 86300962 86301162 -34956368 + B3 SINE B2 3 210 -6 7 1243 28 29 0 0 chr12 86301301 86301336 -34956194 + AT_rich Low_complexity Low_complexity 1 35 0 7 1243 1085 176 14 38 chr12 86301518 86301730 -34955800 - B3 SINE B2 -6 210 4 7 1243 880 312 57 10 chr12 86301746 86302134 -34955396 - L1ME1 LINE L1 -321 5858 5453 7 1243 483 242 0 0 chr12 86302153 86302248 -34955282 - PB1D9 SINE Alu -20 100 6 7 1243 312 220 216 0 chr12 86302261 86302396 -34955134 - L1ME1 LINE L1 -773 5411 5248 7 1243 749 295 12 0 chr12 86302427 86302600 -34954930 - B3A SINE B2 -22 176 2 7 1243 288 0 0 0 chr12 86302710 86302742 -34954788 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1243 389 194 148 0 chr12 86302771 86302879 -34954651 - B3A SINE B2 -73 125 2 7 1243 234 177 97 0 chr12 86302897 86302959 -34954571 - L1ME1 LINE L1 -1050 5096 5029 7 1243 658 265 84 63 chr12 86303696 86303934 -34953596 - B4A SINE B4 0 292 50 7 1243 319 266 55 9 chr12 86303963 86304073 -34953457 - PB1D10 SINE Alu -2 115 1 7 1243 216 342 0 88 chr12 86304208 86304288 -34953242 + ID4_ SINE ID 2 74 -9 7 1243 645 229 62 52 chr12 86304740 86304919 -34952611 + B3A SINE B2 1 183 -15 7 1243 264 59 0 0 chr12 86304919 86304953 -34952577 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1243 645 229 62 52 chr12 86304953 86304966 -34952564 + B3A SINE B2 184 195 -3 7 1243 338 283 75 9 chr12 86305063 86305170 -34952360 - PB1D10 SINE Alu -1 116 3 7 1243 324 0 0 0 chr12 86305661 86305697 -34951833 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1243 324 0 0 0 chr12 86305697 86305732 -34951798 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1243 457 316 25 12 chr12 86305823 86305983 -34951547 - RSINE1 SINE B4 -1 164 3 7 1243 906 234 46 0 chr12 86305994 86306191 -34951339 - B3 SINE B2 -10 206 1 7 1243 518 292 0 7 chr12 86306279 86306417 -34951113 - ID_B1 SINE B4 -13 211 75 7 1243 474 287 65 11 chr12 86306492 86306722 -34950808 + L1MD3 LINE L1 7578 7929 -66 7 1243 348 338 0 15 chr12 86307175 86307307 -34950223 + (CA)n Simple_repeat Simple_repeat 1 130 0 7 1243 533 262 120 22 chr12 86307465 86307529 -34950001 + ID SINE ID 1 82 -142 7 1243 754 168 16 0 chr12 86307529 86307654 -34949876 + B1_Mur3 SINE Alu 3 129 -20 7 1243 251 236 125 0 chr12 86307662 86307734 -34949796 + ID_B1 SINE B4 144 224 0 7 1243 723 272 5 35 chr12 86308103 86308129 -34949401 - B3A SINE B2 0 198 178 7 1243 315 0 0 0 chr12 86308129 86308164 -34949366 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1243 723 272 5 35 chr12 86308164 86308339 -34949191 - B3A SINE B2 -21 177 3 7 1243 22 35 0 0 chr12 86308987 86309016 -34948514 + AT_rich Low_complexity Low_complexity 1 29 0 7 1243 264 158 0 0 chr12 86309139 86309196 -34948334 + CT-rich Low_complexity Low_complexity 2 58 0 7 1243 1200 15 0 0 chr12 86309270 86309405 -34948125 + B1_Mus1 SINE Alu 5 139 -9 7 1243 2924 42 8 0 chr12 86309467 86309828 -34947702 - L1_Mus1 LINE L1 0 6567 6204 7 1243 555 305 56 48 chr12 86310965 86311234 -34946296 + B4A SINE B4 3 273 -19 7 1243 231 157 0 0 chr12 86311289 86311340 -34946190 + GA-rich Low_complexity Low_complexity 2 52 0 7 1243 270 0 0 0 chr12 86312001 86312031 -34945499 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1243 1127 57 28 0 chr12 86312575 86312716 -34944814 + B1_Mus1 SINE Alu 2 146 -2 7 1243 1723 21 0 0 chr12 86312792 86312984 -34944546 + B2_Mm1t SINE B2 1 192 -1 7 1243 342 0 0 0 chr12 86313299 86313337 -34944193 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 1243 537 193 118 0 chr12 86313337 86313456 -34944074 - B1_Mur2 SINE Alu -11 138 6 7 1243 272 200 17 0 chr12 86313817 86313877 -34943653 - ID SINE ID -146 78 18 7 1243 249 350 31 31 chr12 86314201 86314425 -34943105 - Charlie18a DNA MER1_type -77 265 42 7 1243 339 263 158 44 chr12 86314718 86314901 -34942629 - B3A SINE B2 -12 204 1 7 1243 274 286 10 71 chr12 86315790 86315889 -34941641 + ID4 SINE ID 13 105 -47 7 1243 436 174 287 7 chr12 86316170 86316320 -34941210 - B3 SINE B2 -4 212 21 7 1243 848 133 37 7 chr12 86316423 86316559 -34940971 - B1_Mur2 SINE Alu -9 140 1 7 1243 553 178 0 10 chr12 86316561 86316663 -34940867 - B1_Mur2 SINE Alu 0 149 49 7 1243 275 226 47 12 chr12 86316699 86316784 -34940746 + Tigger1 DNA MER2_type 224 311 -2107 7 1243 522 211 0 0 chr12 86316805 86316900 -34940630 - B3 SINE B2 -121 95 1 7 1243 769 138 140 24 chr12 86316919 86317083 -34940447 - B2_Mm2 SINE B2 -11 184 2 7 1243 1181 61 0 0 chr12 86317121 86317268 -34940262 - B1_Mus2 SINE Alu 0 147 1 7 1243 1830 262 79 76 chr12 86317280 86318119 -34939411 + Tigger1 DNA MER2_type 315 1155 -1263 7 1243 345 288 0 0 chr12 86318122 86318195 -34939335 + ID4_ SINE ID 5 77 -6 7 1243 234 247 21 105 chr12 86318195 86318217 -34939313 + B4A SINE B4 5 91 -201 7 1243 501 262 6 86 chr12 86318346 86318521 -34939009 + Tigger1 DNA MER2_type 1155 1315 -1103 7 1243 1071 206 19 9 chr12 86318555 86318766 -34938764 + B3 SINE B2 1 213 -3 7 1243 431 268 55 0 chr12 86318796 86318923 -34938607 + RSINE1 SINE B4 3 136 -29 7 1243 805 254 28 37 chr12 86319414 86319631 -34937899 - ID_B1 SINE B4 -8 216 2 7 1243 428 282 35 7 chr12 86319639 86319782 -34937748 - B1F1 SINE Alu -2 147 1 7 1243 216 86 0 0 chr12 86319824 86319859 -34937671 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1243 1050 67 0 0 chr12 86319862 86319996 -34937534 - B1_Mus1 SINE Alu -14 134 1 7 1243 22 0 0 0 chr12 86320002 86320024 -34937506 + AT_rich Low_complexity Low_complexity 1 22 0 7 1243 809 141 16 0 chr12 86320060 86320188 -34937342 - B3 SINE B2 -86 130 1 7 1243 26 0 0 0 chr12 86320505 86320531 -34936999 + AT_rich Low_complexity Low_complexity 1 26 0 7 1243 450 274 9 0 chr12 86320531 86320637 -34936893 + B3A SINE B2 3 109 -89 7 1243 309 109 0 0 chr12 86320958 86321004 -34936526 + (T)n Simple_repeat Simple_repeat 1 46 0 7 1243 1233 40 0 0 chr12 86321004 86321152 -34936378 - B1_Mus1 SINE Alu 0 148 1 7 1243 199 232 145 0 chr12 86321165 86321234 -34936296 + MIRc SINE MIR 78 156 -112 7 1243 592 251 35 23 chr12 86321581 86321752 -34935778 + B3A SINE B2 5 177 -21 7 1243 564 196 0 9 chr12 86321971 86322079 -34935451 + B1_Mur1 SINE Alu 43 149 0 7 1243 355 194 15 0 chr12 86322418 86322485 -34935045 + ID4_ SINE ID 4 71 -12 7 1243 201 312 0 0 chr12 86322497 86322545 -34934985 + polypurine Low_complexity Low_complexity 2 49 0 7 1243 335 300 92 0 chr12 86323587 86323707 -34933823 + ID_B1 SINE B4 57 187 -37 7 1243 441 0 0 0 chr12 86324289 86324338 -34933192 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 7 1243 1097 109 0 0 chr12 86324340 86324487 -34933043 - B1_Mus1 SINE Alu 0 148 2 7 1243 271 253 0 95 chr12 86324508 86324613 -34932917 - B3A SINE B2 -10 188 94 7 1243 675 234 14 14 chr12 86324801 86324944 -34932586 + B1_Mur2 SINE Alu 7 149 0 7 1243 840 258 9 9 chr12 86325048 86325271 -34932259 - ID_B1 SINE B4 -1 223 1 7 1243 1802 116 35 82 chr12 86325428 86325569 -34931961 - RMER15 LTR ERVL -22 553 434 7 1243 769 134 87 29 chr12 86325569 86325707 -34931823 + B1_Mur4 SINE Alu 5 150 0 7 1243 1802 116 35 82 chr12 86325707 86325932 -34931598 - RMER15 LTR ERVL -142 433 204 7 1243 667 161 130 8 chr12 86325907 86326038 -34931492 - B1_Mus2 SINE Alu 0 147 1 7 1243 261 0 0 0 chr12 86326048 86326077 -34931453 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1243 322 266 219 31 chr12 86326246 86326374 -34931156 + RSINE1 SINE B4 2 153 -12 7 1243 198 103 0 0 chr12 86326395 86326424 -34931106 + (ATG)n Simple_repeat Simple_repeat 2 30 0 7 1243 515 316 45 0 chr12 86326441 86326596 -34930934 + RSINE1 SINE B4 3 164 -1 7 1243 735 158 68 0 chr12 86327035 86327168 -34930362 + B1_Mus1 SINE Alu 1 142 -6 8 1243 566 301 98 0 chr12 86327181 86327374 -34930156 - ID_B1 SINE B4 -3 221 10 8 1243 248 157 14 41 chr12 86327387 86327428 -34930102 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 8 1243 1048 109 0 33 chr12 86327428 86327580 -34929950 - B1_Mus1 SINE Alu 0 148 2 8 1243 248 157 14 41 chr12 86327580 86327611 -34929919 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 8 1243 1466 68 5 16 chr12 86327625 86327818 -34929712 + B2_Mm1a SINE B2 2 192 -1 8 1243 582 157 171 17 chr12 86327819 86327936 -34929594 - B1_Mur2 SINE Alu -13 136 2 8 1243 1644 52 0 0 chr12 86327990 86328182 -34929348 + B2_Mm1t SINE B2 2 193 0 8 1243 434 209 12 0 chr12 86328232 86328318 -34929212 - MTEa LTR MaLR -7 372 286 8 1243 1505 249 42 137 chr12 86328363 86328589 -34928941 - MTEa-int LTR MaLR -27 1553 1374 8 1243 1139 56 21 0 chr12 86328589 86328732 -34928798 - B1_Mm SINE Alu 0 147 2 8 1243 1505 249 42 137 chr12 86328732 86329076 -34928454 - MTEa-int LTR MaLR -207 1373 1037 8 1243 1248 221 135 32 chr12 86329081 86329459 -34928071 + MTD LTR MaLR 3 419 0 8 1243 2437 261 114 63 chr12 86329469 86330127 -34927403 - MTEa-int LTR MaLR -564 1016 291 8 1243 803 156 28 7 chr12 86330127 86330269 -34927261 + B1_Mur3 SINE Alu 5 149 0 8 1243 1157 130 10 40 chr12 86330272 86330473 -34927057 + B2_Mm2 SINE B2 1 195 0 8 1243 2437 261 114 63 chr12 86330473 86330749 -34926781 - MTEa-int LTR MaLR -1290 290 30 8 1243 638 281 119 41 chr12 86330757 86331076 -34926454 - MTEa LTR MaLR 0 379 36 8 1243 728 232 0 0 chr12 86331127 86331265 -34926265 + ID_B1 SINE B4 86 223 -1 8 1243 360 0 0 0 chr12 86331359 86331399 -34926131 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1243 2095 107 3 0 chr12 86331557 86331875 -34925655 - ORR1A2 LTR MaLR -8 319 1 8 1243 351 237 25 34 chr12 86331881 86331999 -34925531 - MLT1C LTR MaLR -346 121 5 8 1243 657 230 7 36 chr12 86332311 86332451 -34925079 + B1_Mus1 SINE Alu 1 136 -12 8 1243 351 0 0 0 chr12 86332461 86332500 -34925030 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1243 2131 147 128 5 chr12 86332609 86332999 -34924531 - BGLII_B LTR ERVK 0 441 4 8 1243 6545 127 50 20 chr12 86332999 86333889 -34923641 - MYSERV16_I-int LTR ERVK 0 2326 1404 8 1243 1764 31 0 0 chr12 86333889 86334080 -34923450 - B2_Mm1a SINE B2 -2 191 1 8 1243 6545 127 50 20 chr12 86334080 86334325 -34923205 - MYSERV16_I-int LTR ERVK -923 1403 1157 8 1243 712 228 107 34 chr12 86334389 86334566 -34922964 - ID_B1 SINE B4 -31 193 4 8 1243 2574 167 86 23 chr12 86334585 86335106 -34922424 + RMER15 LTR ERVL 22 575 0 8 1243 1793 85 103 84 chr12 86335172 86335184 -34922346 + ORR1A2 LTR MaLR 1 12 -315 8 1243 3828 26 28 7 chr12 86335184 86335611 -34921919 - RLTR10C LTR ERVK 0 436 1 8 1243 1793 85 103 84 chr12 86335611 86335919 -34921611 + ORR1A2 LTR MaLR 13 327 0 8 1243 249 83 0 0 chr12 86336121 86336157 -34921373 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 8 1243 261 0 0 0 chr12 86336282 86336311 -34921219 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1243 1187 68 7 0 chr12 86336311 86336457 -34921073 - B1_Mm SINE Alu 0 147 1 8 1243 756 122 8 25 chr12 86336522 86336640 -34920890 + B1_Mur3 SINE Alu 34 149 0 8 1243 302 308 73 34 chr12 86336806 86337011 -34920519 - L1MC LINE L1 -1553 4593 4381 8 1243 222 91 0 0 chr12 86337481 86337514 -34920016 + (CCG)n Simple_repeat Simple_repeat 1 33 0 8 1243 425 275 37 0 chr12 86339105 86339214 -34918316 + PB1D9 SINE Alu 1 113 -7 8 1243 394 240 0 0 chr12 86339543 86339618 -34917912 - ID4 SINE ID -5 78 4 8 1243 736 234 43 21 chr12 86339839 86340027 -34917503 + ID_B1 SINE B4 11 202 -22 8 1243 254 240 67 0 chr12 86340191 86340266 -34917264 + L2a LINE L2 3336 3415 -11 8 1243 23 0 0 0 chr12 86340377 86340400 -34917130 + AT_rich Low_complexity Low_complexity 1 23 0 8 1243 233 292 0 122 chr12 86340419 86340493 -34917037 - RSINE1 SINE B4 -6 159 95 8 1243 421 125 0 0 chr12 86340619 86340691 -34916839 - L1Md_F2 LINE L1 0 6582 6511 8 1243 262 253 92 13 chr12 86340710 86340786 -34916744 - ID4 SINE ID -1 82 1 8 1243 274 257 14 14 chr12 86340880 86340951 -34916579 - RSINE1 SINE B4 -5 160 90 8 1243 1259 43 0 0 chr12 86341082 86341221 -34916309 + B1_Mus2 SINE Alu 1 139 -8 8 1243 228 43 43 21 chr12 86341221 86341268 -34916262 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 8 1243 562 200 118 0 chr12 86341272 86341382 -34916148 - B1_Mur2 SINE Alu -20 129 7 8 1243 353 205 108 67 chr12 86341278 86341398 -34916132 - MT2B LTR ERVL -322 279 155 8 1243 1312 27 0 13 chr12 86341600 86341749 -34915781 - B1_Mus1 SINE Alu 0 148 2 8 1243 341 295 135 82 chr12 86341779 86341986 -34915544 - MER20 DNA MER1_type -1 218 1 8 1243 235 261 93 93 chr12 86342380 86342574 -34914956 - L1MC5 LINE L1 -741 7220 7027 8 1243 526 295 0 0 chr12 86342955 86343077 -34914453 - ID_B1 SINE B4 -7 217 96 8 1243 297 89 0 0 chr12 86343080 86343125 -34914405 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1243 396 186 94 38 chr12 86343249 86343285 -34914245 + PB1D10 SINE Alu 6 112 0 8 1243 405 138 0 0 chr12 86343285 86343350 -34914180 + ID_B1 SINE B4 158 222 -2 8 1243 903 244 13 75 chr12 86343626 86343809 -34913721 - B3 SINE B2 -3 213 40 8 1243 287 0 53 0 chr12 86343809 86343847 -34913683 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 8 1243 1120 74 0 0 chr12 86343848 86343983 -34913547 - B1_Mus1 SINE Alu -12 136 2 8 1243 903 244 13 75 chr12 86343983 86344023 -34913507 - B3 SINE B2 -177 39 2 8 1243 234 0 0 0 chr12 86344043 86344069 -34913461 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 8 1243 645 285 86 0 chr12 86344071 86344222 -34913308 - B3A SINE B2 -34 164 1 8 1243 2416 138 40 46 chr12 86344467 86344945 -34912585 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1243 937 306 121 48 chr12 86344994 86345666 -34911864 - L2 LINE L2 -912 2507 1787 8 1243 885 265 82 43 chr12 86346072 86346352 -34911178 - B4A SINE B4 -1 291 1 8 1243 395 250 71 86 chr12 86346787 86346927 -34910603 + B4A SINE B4 70 207 -85 8 1243 1476 76 5 5 chr12 86346930 86347115 -34910415 - B2_Mm2 SINE B2 -9 186 2 8 1243 203 0 37 0 chr12 86347127 86347154 -34910376 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1243 198 0 0 0 chr12 86347475 86347497 -34910033 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1243 1080 24 110 0 chr12 86347500 86347627 -34909903 - B1_Mm SINE Alu -6 141 1 8 1243 1002 223 56 0 chr12 86347648 86347845 -34909685 - B3 SINE B2 -7 209 2 8 1243 276 280 0 47 chr12 86347866 86347952 -34909578 - ID_B1 SINE B4 -9 215 134 8 1243 230 73 24 0 chr12 86347968 86348009 -34909521 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1243 325 263 88 29 chr12 86348012 86348114 -34909416 - RSINE1 SINE B4 -34 131 24 8 1243 619 282 12 55 chr12 86348127 86348292 -34909238 - ID_B1 SINE B4 -66 158 1 8 1243 851 179 50 0 chr12 86348345 86348485 -34909045 - B1_Mus1 SINE Alu -1 147 1 8 1243 21 36 0 0 chr12 86348658 86348686 -34908844 + AT_rich Low_complexity Low_complexity 1 28 0 8 1243 684 254 14 7 chr12 86348717 86348856 -34908674 - B1_Mur1 SINE Alu -3 146 7 8 1243 843 186 20 14 chr12 86349364 86349511 -34908019 + B1_Mur3 SINE Alu 2 149 0 8 1243 662 254 21 21 chr12 86349557 86349702 -34907828 + B1_Mur2 SINE Alu 1 145 -4 8 1243 26 74 0 0 chr12 86349744 86349798 -34907732 + AT_rich Low_complexity Low_complexity 1 54 0 8 1243 1776 36 0 0 chr12 86349858 86350051 -34907479 - B2_Mm1t SINE B2 0 193 1 8 1243 441 266 39 65 chr12 86350051 86350204 -34907326 - B1F2 SINE Alu 0 149 1 8 1243 28 0 0 0 chr12 86350232 86350260 -34907270 + AT_rich Low_complexity Low_complexity 1 28 0 8 1243 582 155 216 0 chr12 86350273 86350389 -34907141 - B1_Mus1 SINE Alu 0 148 8 8 1243 344 254 136 159 chr12 86350389 86350578 -34906952 + MER82 DNA MER2_type 66 243 -410 8 1243 1212 55 7 0 chr12 86350578 86350723 -34906807 - B1_Mm SINE Alu 0 147 2 8 1243 344 254 136 159 chr12 86350723 86350828 -34906702 + MER82 DNA MER2_type 244 353 -300 8 1243 264 30 0 0 chr12 86350934 86350967 -34906563 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1243 643 333 19 33 chr12 86351017 86351231 -34906299 + MER82 DNA MER2_type 440 650 -3 8 1243 183 80 0 0 chr12 86351322 86351347 -34906183 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1243 316 224 45 34 chr12 86351347 86351432 -34906098 - B4A SINE B4 -68 224 139 8 1243 1306 98 264 11 chr12 86351432 86351796 -34905734 + RMER6B LTR ERVK 1 456 -5 8 1243 407 353 37 0 chr12 86351801 86351937 -34905593 - B4A SINE B4 -147 145 5 8 1243 888 221 6 0 chr12 86352057 86352220 -34905310 - B3 SINE B2 -5 211 48 8 1243 210 24 45 45 chr12 86352261 86352305 -34905225 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 8 1243 436 127 0 40 chr12 86352310 86352384 -34905146 - B1_Mm SINE Alu 0 147 77 8 1243 1324 35 0 0 chr12 86352426 86352570 -34904960 - B1_Mm SINE Alu -1 146 3 8 1243 1068 69 7 20 chr12 86352597 86352744 -34904786 + B2_Mm2 SINE B2 1 145 -50 8 1243 198 0 0 0 chr12 86352744 86352766 -34904764 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1243 236 91 23 0 chr12 86352766 86352809 -34904721 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 1243 279 321 18 62 chr12 86352827 86352940 -34904590 + PB1D10 SINE Alu 1 108 -9 8 1243 1858 145 5 162 chr12 86353022 86353410 -34904120 - ORR1A2 LTR MaLR 0 327 1 8 1243 22 0 0 0 chr12 86353457 86353479 -34904051 + AT_rich Low_complexity Low_complexity 1 22 0 8 1243 475 282 39 26 chr12 86353639 86353792 -34903738 + RSINE1 SINE B4 11 165 0 8 1243 227 317 93 37 chr12 86354354 86354462 -34903068 + MIR SINE MIR 84 201 -67 8 1243 214 154 38 19 chr12 86354918 86354971 -34902559 + (CAG)n Simple_repeat Simple_repeat 2 55 0 8 1243 1690 37 0 5 chr12 86355187 86355375 -34902155 + B2_Mm2 SINE B2 1 187 -8 8 1243 390 269 58 58 chr12 86356829 86356967 -34900563 + B1F2 SINE Alu 1 138 -11 9 1243 1540 95 50 6 chr12 86357139 86357418 -34900112 - ORR1A2 LTR MaLR -8 338 43 9 1243 261 139 0 0 chr12 86357548 86357591 -34899939 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 9 1243 1277 28 7 0 chr12 86357656 86357798 -34899732 + B1_Mus1 SINE Alu 5 147 -1 9 1243 221 333 0 0 chr12 86357812 86357869 -34899661 + PB1D10 SINE Alu 1 57 -60 9 1243 501 309 14 7 chr12 86357871 86358011 -34899519 + RSINE1 SINE B4 23 163 -2 9 1243 690 232 79 14 chr12 86358168 86358308 -34899222 - B1_Mur1 SINE Alu 0 149 1 9 1243 24 0 0 0 chr12 86358362 86358386 -34899144 + AT_rich Low_complexity Low_complexity 1 24 0 9 1243 859 277 14 9 chr12 86358547 86358769 -34898761 + ID_B1 SINE B4 2 224 0 9 1243 309 290 14 0 chr12 86359606 86359675 -34897855 + RSINE1 SINE B4 96 165 0 9 1243 572 323 6 12 chr12 86360249 86360412 -34897118 - B3A SINE B2 -1 197 36 9 1243 529 291 31 0 chr12 86360466 86360593 -34896937 - B1F SINE Alu -12 137 7 9 1243 726 173 59 22 chr12 86360756 86360892 -34896638 - B1_Mur3 SINE Alu -8 141 1 9 1243 607 280 132 62 chr12 86361419 86361560 -34895970 - L1ME3A LINE L1 -8 6165 6028 9 1243 1056 215 26 0 chr12 86361560 86361751 -34895779 + B3 SINE B2 2 197 -19 9 1243 607 280 132 62 chr12 86361751 86361979 -34895551 - L1ME3A LINE L1 -146 6027 5770 9 1243 721 266 12 25 chr12 86362047 86362209 -34895321 - RSINE1 SINE B4 -2 163 4 9 1243 318 244 11 32 chr12 86362347 86362440 -34895090 - L1ME3 LINE L1 -299 5863 5773 9 1243 392 321 48 48 chr12 86362443 86362896 -34894634 - L1ME3 LINE L1 -601 5639 5191 9 1243 266 222 270 0 chr12 86362898 86363024 -34894506 - Looper DNA PiggyBac 0 1558 1399 9 1243 423 240 95 8 chr12 86363042 86363168 -34894362 - Looper DNA PiggyBac -598 960 824 9 1243 600 174 56 3 chr12 86363231 86363387 -34894143 + B3 SINE B2 2 172 -23 9 1243 588 311 99 70 chr12 86363386 86363618 -34893912 - Looper DNA PiggyBac -772 786 527 9 1243 1008 206 67 5 chr12 86363618 86363813 -34893717 - B3 SINE B2 -9 207 1 9 1243 588 311 99 70 chr12 86363813 86364196 -34893334 - Looper DNA PiggyBac -1032 526 153 9 1243 410 234 117 0 chr12 86364221 86364315 -34893215 - RSINE1 SINE B4 -57 108 4 9 1243 238 183 83 0 chr12 86364492 86364552 -34892978 - B3 SINE B2 -5 211 147 9 1243 684 226 8 8 chr12 86364574 86364708 -34892822 - B1_Mus2 SINE Alu -10 137 4 9 1243 756 260 34 11 chr12 86364708 86364864 -34892666 - B3 SINE B2 -54 162 3 9 1243 976 98 194 152 chr12 86364864 86365081 -34892449 - URR1A DNA MER1_type 0 226 1 9 1243 186 71 0 0 chr12 86365430 86365458 -34892072 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1243 1209 72 0 0 chr12 86365473 86365626 -34891904 - B2_Mm2 SINE B2 -41 154 2 9 1243 740 271 71 24 chr12 86366180 86366392 -34891138 + ID_B1 SINE B4 2 223 -1 9 1243 243 257 68 0 chr12 86366471 86366545 -34890985 + MLT2F LTR ERVL 1 79 -584 9 1243 250 175 35 17 chr12 86366656 86366714 -34890816 - ERVL-E-int LTR ERVL -450 5217 5159 9 1243 186 189 0 0 chr12 86366746 86366783 -34890747 + (TTA)n Simple_repeat Simple_repeat 2 38 0 9 1243 585 258 8 0 chr12 86366805 86366925 -34890605 - B3A SINE B2 -75 123 3 9 1243 200 270 16 16 chr12 86366940 86367004 -34890526 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1243 797 199 23 40 chr12 86367171 86367344 -34890186 - B3 SINE B2 0 216 47 9 1243 330 304 39 0 chr12 86367553 86367655 -34889875 + PB1D10 SINE Alu 1 106 -11 9 1243 191 332 87 92 chr12 86368710 86368916 -34888614 + L2c LINE L2 2949 3153 -234 9 1243 200 122 48 24 chr12 86369220 86369262 -34888268 + (TATG)n Simple_repeat Simple_repeat 1 43 0 9 1243 939 171 0 7 chr12 86371941 86372088 -34885442 - B1_Mus1 SINE Alu -2 146 1 9 1243 227 312 115 0 chr12 86373091 86373174 -34884356 - MIRb SINE MIR -145 117 26 9 1243 1086 168 62 43 chr12 86373726 86373937 -34883593 + B3 SINE B2 1 215 -1 9 1243 649 184 18 9 chr12 86373948 86374058 -34883472 - PB1D9 SINE Alu -8 112 2 9 1243 452 271 137 53 chr12 86374106 86374332 -34883198 - MER102a DNA MER1_type -26 304 60 9 1243 186 43 0 0 chr12 86375060 86375083 -34882447 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1243 877 165 0 28 chr12 86375087 86375230 -34882300 - B1_Mus1 SINE Alu -8 140 2 9 1243 213 121 0 0 chr12 86375528 86375561 -34881969 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1243 349 319 19 90 chr12 86375680 86375835 -34881695 - RSINE1 SINE B4 0 165 22 9 1243 330 211 0 126 chr12 86375870 86375957 -34881573 - ID2 SINE ID -6 77 2 9 1243 1061 196 14 50 chr12 86375982 86376202 -34881328 - B3 SINE B2 -2 214 3 9 155 553 298 26 16 chr12 86376298 86376480 -34881050 - B3A SINE B2 -20 196 11 9 1244 198 0 0 0 chr12 86376490 86376512 -34881018 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1244 377 123 15 0 chr12 86376512 86376577 -34880953 + (GA)n Simple_repeat Simple_repeat 2 67 0 9 1244 261 0 0 0 chr12 86376645 86376674 -34880856 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1244 678 165 7 73 chr12 86376674 86376811 -34880719 - B1_Mur4 SINE Alu -8 142 15 9 1244 542 183 0 31 chr12 86376812 86376908 -34880622 - B1_Mur1 SINE Alu -14 135 43 9 1244 1001 250 64 0 chr12 86376983 86377187 -34880343 + ID_B1 SINE B4 4 220 -4 9 1244 1167 144 144 0 chr12 86377475 86377670 -34879860 + URR1A DNA MER1_type 4 226 0 9 1244 652 113 37 9 chr12 86378183 86378290 -34879240 - B1_Mus2 SINE Alu -4 143 34 9 1244 288 0 0 0 chr12 86378306 86378338 -34879192 + (GA)n Simple_repeat Simple_repeat 2 33 0 9 1244 333 0 0 0 chr12 86378338 86378374 -34879156 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1244 242 262 45 76 chr12 86378374 86378440 -34879090 - PB1D7 SINE Alu -15 105 42 9 1244 573 254 53 38 chr12 86378475 86378684 -34878846 - B3 SINE B2 -4 212 1 9 1244 588 242 186 6 chr12 86378786 86378969 -34878561 - B3 SINE B2 0 216 1 9 1244 23 0 0 0 chr12 86379011 86379034 -34878496 + AT_rich Low_complexity Low_complexity 1 23 0 9 1244 384 77 0 0 chr12 86379034 86379086 -34878444 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1244 1381 98 11 5 chr12 86379304 86379489 -34878041 - B2_Mm2 SINE B2 -9 186 1 9 1244 844 260 96 11 chr12 86379521 86379782 -34877748 - L1MB7 LINE L1 -219 5965 5683 9 1244 461 161 0 5 chr12 86379782 86379862 -34877668 - B1_Mur2 SINE Alu -55 94 18 9 1244 384 288 81 29 chr12 86379875 86380011 -34877519 - ID_B1 SINE B4 0 224 82 9 1244 25 31 0 0 chr12 86380015 86380047 -34877483 + AT_rich Low_complexity Low_complexity 1 32 0 9 1244 716 281 53 34 chr12 86380133 86380339 -34877191 - B4 SINE B4 0 292 83 9 1244 1279 55 0 0 chr12 86380353 86380498 -34877032 + B1_Mus1 SINE Alu 3 147 -1 9 1244 781 237 74 20 chr12 86380518 86380720 -34876810 - B3 SINE B2 -1 215 3 9 1244 297 293 12 0 chr12 86380734 86380816 -34876714 - B4 SINE B4 -209 83 1 9 1244 603 225 125 0 chr12 86380844 86380964 -34876566 - B1F2 SINE Alu -5 144 10 9 1244 213 200 0 0 chr12 86380967 86381007 -34876523 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1244 518 315 102 6 chr12 86381016 86381182 -34876348 - B3A SINE B2 -16 182 1 9 1244 780 201 237 23 chr12 86381211 86381384 -34876146 + B3 SINE B2 1 210 -6 9 1244 204 111 0 0 chr12 86381638 86381674 -34875856 + (CCA)n Simple_repeat Simple_repeat 2 37 0 9 1244 428 254 91 45 chr12 86382006 86382071 -34875459 - ID_B1 SINE B4 -2 222 158 9 1244 2381 155 54 27 chr12 86382071 86382481 -34875049 - MTC LTR MaLR 0 421 1 9 1244 428 254 91 45 chr12 86382481 86382547 -34874983 - ID_B1 SINE B4 -67 157 85 9 1244 311 321 18 44 chr12 86382581 86382695 -34874835 - PB1D10 SINE Alu -6 111 1 9 1244 255 345 42 68 chr12 86382695 86382744 -34874786 - B4A SINE B4 -204 88 43 9 1244 315 0 0 0 chr12 86383329 86383364 -34874166 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1244 765 193 20 40 chr12 86383384 86383535 -34873995 - B1_Mur2 SINE Alu 0 149 2 9 1244 579 267 106 22 chr12 86384148 86384328 -34873202 + B3A SINE B2 3 197 -1 9 1244 465 229 101 0 chr12 86384497 86384606 -34872924 - B3 SINE B2 -95 121 2 9 1244 363 44 0 0 chr12 86385502 86385547 -34871983 + (TC)n Simple_repeat Simple_repeat 2 46 0 9 1244 241 341 0 22 chr12 86385966 86386056 -34871474 + MER44B DNA MER2_type 1 87 -463 9 1244 436 266 80 0 chr12 86386069 86386182 -34871348 + B1_Mur3 SINE Alu 7 128 -21 9 1244 324 202 167 0 chr12 86386247 86386331 -34871199 + MER44B DNA MER2_type 181 278 -272 9 1244 294 306 11 23 chr12 86386325 86386412 -34871118 + MER44B DNA MER2_type 461 546 -4 9 1244 634 214 49 28 chr12 86386471 86386615 -34870915 - RSINE1 SINE B4 -8 157 11 9 1244 432 0 0 0 chr12 86386640 86386688 -34870842 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1244 951 177 7 7 chr12 86386854 86387002 -34870528 - B1_Mur1 SINE Alu -1 148 1 9 1244 1204 270 45 78 chr12 86387047 86387404 -34870126 - L1M4 LINE L1 -1775 4371 4015 9 1244 291 321 163 7 chr12 86387404 86387545 -34869985 - RSINE1 SINE B4 0 165 3 9 1244 1204 270 45 78 chr12 86387545 86387738 -34869792 - L1M4 LINE L1 -2132 4014 3839 9 1244 384 152 30 0 chr12 86387774 86387840 -34869690 - L1M4 LINE L1 -2456 3684 3617 9 1244 531 210 40 86 chr12 86387840 86387991 -34869539 - ID_B1 SINE B4 -3 221 78 9 1244 525 205 102 36 chr12 86387995 86388132 -34869398 - B1_Mur2 SINE Alu -2 147 2 9 1244 475 251 117 10 chr12 86388207 86388380 -34869150 - L1M4 LINE L1 -2738 3408 3214 9 1244 183 42 0 0 chr12 86388380 86388404 -34869126 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1244 448 251 117 10 chr12 86388404 86388435 -34869095 - L1M4 LINE L1 -2933 3213 3183 9 1244 311 218 66 22 chr12 86388869 86389005 -34868525 - L1M4 LINE L1 -2979 3167 3026 9 1244 645 215 170 28 chr12 86389009 86389191 -34868339 - B3 SINE B2 -1 215 8 9 1244 478 246 92 19 chr12 86389301 86389508 -34868022 - L1M4 LINE L1 -3101 3045 2824 9 1244 411 276 124 15 chr12 86389517 86389719 -34867811 - ID_B1 SINE B4 0 224 1 9 1244 207 0 0 0 chr12 86390272 86390295 -34867235 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 9 1244 587 194 110 15 chr12 86390323 86390459 -34867071 - B1_Mur1 SINE Alu 0 149 1 9 1244 682 154 154 0 chr12 86391647 86391777 -34865753 + B1_Mur4 SINE Alu 1 150 0 9 1244 204 0 83 0 chr12 86391983 86392019 -34865511 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1244 278 216 32 64 chr12 86392540 86392634 -34864896 + MYSERV6-int LTR ERVK 1541 1631 -5288 1 1244 2757 201 22 34 chr12 86393011 86393671 -34863859 + MYSERV6-int LTR ERVK 2518 3201 -5758 1 1244 376 161 0 24 chr12 86393673 86393756 -34863774 + GA-rich Low_complexity Low_complexity 1 81 0 1 1244 909 70 8 8 chr12 86393757 86393886 -34863644 + B2_Mm2 SINE B2 1 129 -66 1 1244 1658 221 151 11 chr12 86394020 86394469 -34863061 + MYSERV6-int LTR ERVK 3711 4222 -1038 1 1244 1577 237 136 57 chr12 86394458 86395267 -34862263 + MYSERV-int LTR ERVK 3909 4781 -1769 1 1244 631 203 0 45 chr12 86395238 86395372 -34862158 + MYSERV-int LTR ERVK 5089 5216 -1703 1 1244 473 283 62 89 chr12 86395750 86395975 -34861555 + RMER20B LTR ERVK 90 308 -319 1 1244 376 117 16 16 chr12 86396188 86396249 -34861281 - B1_Mur4 SINE Alu -29 121 61 1 1244 647 267 151 5 chr12 86396293 86396485 -34861045 + B4A SINE B4 7 226 -66 1 1244 462 240 10 0 chr12 86397409 86397505 -34860025 + B1_Mur2 SINE Alu 6 102 -47 1 1244 21 0 0 0 chr12 86401639 86401660 -34855870 + AT_rich Low_complexity Low_complexity 1 21 0 1 1244 22 0 0 0 chr12 86401937 86401959 -34855571 + AT_rich Low_complexity Low_complexity 1 22 0 1 1244 1271 101 6 11 chr12 86406169 86406349 -34851181 + B2_Mm1a SINE B2 1 179 -14 1 1244 810 264 19 5 chr12 86406469 86406682 -34850848 - B3 SINE B2 0 216 1 1 1244 471 211 11 0 chr12 86406842 86406932 -34850598 + B1_Mur1 SINE Alu 17 107 -42 1 1244 433 248 25 8 chr12 86407098 86407216 -34850314 + PB1D7 SINE Alu 1 120 0 1 1244 22 0 0 0 chr12 86407522 86407544 -34849986 + AT_rich Low_complexity Low_complexity 1 22 0 1 1244 339 109 0 0 chr12 86407631 86407686 -34849844 - B1_Mus2 SINE Alu 0 147 93 1 1244 1458 203 98 45 chr12 86407812 86408210 -34849320 - MTD LTR MaLR 0 419 1 1 1244 25 31 0 0 chr12 86408246 86408278 -34849252 + AT_rich Low_complexity Low_complexity 1 32 0 1 1244 816 212 45 45 chr12 86408322 86408520 -34849010 + B3A SINE B2 1 198 0 1 1244 380 232 0 0 chr12 86408758 86408827 -34848703 + ID4 SINE ID 15 83 0 1 1244 356 235 12 24 chr12 86408827 86408841 -34848689 + ID_B1 SINE B4 15 96 -128 1 1244 577 228 43 19 chr12 86408905 86409066 -34848464 + RMER5 LTR ERV1 328 492 -42 1 1244 348 195 126 32 chr12 86409082 86409243 -34848287 + B4A SINE B4 1 177 -115 1 1244 1593 47 16 0 chr12 86409604 86409794 -34847736 + B2_Mm1t SINE B2 1 193 0 1 1244 21 0 0 0 chr12 86411222 86411243 -34846287 + AT_rich Low_complexity Low_complexity 1 21 0 1 1244 402 74 0 0 chr12 86411722 86411776 -34845754 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1244 200 177 92 92 chr12 86413586 86413673 -34843857 + MIRc SINE MIR 85 171 -97 1 1244 294 243 116 45 chr12 86413780 86413892 -34843638 + PB1D9 SINE Alu 1 120 0 1 1244 472 278 27 40 chr12 86414636 86414786 -34842744 - L1MD2 LINE L1 -380 5979 5832 1 1244 218 32 0 31 chr12 86415570 86415602 -34841928 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 1 1244 354 276 23 0 chr12 86416119 86416206 -34841324 + ID_B1 SINE B4 84 172 -52 1 1244 441 0 0 0 chr12 86416314 86416363 -34841167 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 1 1244 438 268 63 6 chr12 86416400 86416558 -34840972 - Lx8 LINE L1 -346 7127 6961 1 1244 1173 48 21 0 chr12 86416938 86417083 -34840447 - B1_Mus1 SINE Alu 0 148 1 1 1244 495 0 0 0 chr12 86417415 86417470 -34840060 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1244 396 181 12 0 chr12 86417472 86417555 -34839975 - B1_Mur4 SINE Alu -65 85 2 1 1244 234 0 0 0 chr12 86417906 86417932 -34839598 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1244 718 53 0 0 chr12 86417932 86418027 -34839503 - B1_Mus2 SINE Alu -10 137 43 1 1244 279 0 0 0 chr12 86419490 86419521 -34838009 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1244 625 212 15 22 chr12 86419521 86419656 -34837874 - B1_Mur2 SINE Alu -9 140 7 1 1244 288 77 0 0 chr12 86419658 86419697 -34837833 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1244 322 311 67 19 chr12 86419985 86420090 -34837440 - RSINE1 SINE B4 -53 112 3 1 1244 353 258 96 48 chr12 86420120 86420307 -34837223 + B3A SINE B2 1 196 -2 1 1244 408 248 153 15 chr12 86420314 86420445 -34837085 + B1_Mur1 SINE Alu 1 149 0 1 1244 1291 82 27 27 chr12 86420525 86420713 -34836817 + B2_Mm2 SINE B2 1 188 -7 1 1244 285 146 0 0 chr12 86420715 86420763 -34836767 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1244 841 159 28 0 chr12 86420911 86421056 -34836474 - B1_Mur4 SINE Alu -1 149 1 1 1244 21 57 0 0 chr12 86421492 86421527 -34836003 + AT_rich Low_complexity Low_complexity 1 35 0 1 1244 478 238 56 0 chr12 86421532 86421658 -34835872 - RSINE1 SINE B4 -2 163 31 1 1244 356 297 72 0 chr12 86421690 86421801 -34835729 - PB1D7 SINE Alu 0 120 2 1 1244 327 366 9 0 chr12 86421991 86422103 -34835427 + ID_B1 SINE B4 102 214 -10 1 1244 241 210 0 36 chr12 86422119 86422203 -34835327 + GA-rich Low_complexity Low_complexity 4 84 0 1 1244 716 0 0 12 chr12 86422203 86422288 -34835242 + (AATAG)n Simple_repeat Simple_repeat 4 87 0 1 1244 581 175 182 0 chr12 86422420 86422546 -34834984 + B1F1 SINE Alu 1 149 0 1 1244 226 220 0 20 chr12 86422546 86422597 -34834933 + B1_Mur1 SINE Alu 95 144 -5 1 1244 1035 76 14 14 chr12 86422671 86422818 -34834712 + B1_Mus1 SINE Alu 2 148 0 1 1244 190 348 119 12 chr12 86423309 86423469 -34834061 - MIRb SINE MIR -29 239 63 1 1244 1152 150 25 102 chr12 86423810 86423891 -34833639 - URR1A DNA MER1_type 0 226 157 1 1244 270 0 0 0 chr12 86423891 86423921 -34833609 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1244 1167 50 0 0 chr12 86423922 86424062 -34833468 - B1_Mus2 SINE Alu -6 141 2 1 1244 1152 150 25 102 chr12 86424062 86424223 -34833307 - URR1A DNA MER1_type -70 156 1 1 1244 1099 257 102 28 chr12 86424365 86424717 -34832813 + MTE2b LTR MaLR 1 378 -1 1 1244 233 163 0 75 chr12 86424883 86424936 -34832594 + tRNA-Ala-GCY_ tRNA tRNA 8 56 -19 1 1244 268 259 0 0 chr12 86425270 86425328 -34832202 + (CAGG)n Simple_repeat Simple_repeat 2 59 0 1 1244 637 244 74 51 chr12 86425380 86425596 -34831934 - ID_B1 SINE B4 -2 222 2 1 1244 257 186 0 0 chr12 86425626 86425669 -34831861 + B1_Mus2 SINE Alu 5 47 -100 1 1244 343 308 69 0 chr12 86425674 86425804 -34831726 + B1F2 SINE Alu 6 144 -5 1 1244 780 162 59 0 chr12 86426535 86426671 -34830859 + B1_Mur2 SINE Alu 3 146 -3 1 1244 23 0 0 0 chr12 86427342 86427365 -34830165 + AT_rich Low_complexity Low_complexity 1 23 0 1 1244 846 151 27 0 chr12 86427754 86427900 -34829630 - B1_Mur4 SINE Alu 0 150 1 1 1244 248 302 23 0 chr12 86428214 86428300 -34829230 - ID_B1 SINE B4 -52 172 85 1 1244 307 275 0 0 chr12 86429640 86429709 -34827821 - ID4 SINE ID -14 69 1 1 1244 244 70 47 0 chr12 86429738 86429781 -34827749 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1244 977 124 0 0 chr12 86429794 86429931 -34827599 - B1_Mus1 SINE Alu -11 137 1 1 1244 310 234 12 38 chr12 86429963 86430043 -34827487 + BC1_Mm scRNA scRNA 9 86 -66 1 1244 1128 172 34 14 chr12 86430044 86430251 -34827279 - B3 SINE B2 -5 211 1 1 1244 422 171 0 0 chr12 86431133 86431203 -34826327 + ID_B1 SINE B4 90 159 -65 1 1244 385 248 28 47 chr12 86431203 86431239 -34826291 + PB1D10 SINE Alu 9 112 -5 1 1244 319 233 15 114 chr12 86431689 86431820 -34825710 + L2c LINE L2 3270 3387 0 1 1244 243 243 61 14 chr12 86432151 86432233 -34825297 + MIR SINE MIR 35 124 -144 1 1244 512 163 202 8 chr12 86432268 86432392 -34825138 + B1_Mur4 SINE Alu 2 149 -1 1 1244 233 218 75 25 chr12 86432510 86432590 -34824940 - MER46C DNA MER2_type -6 332 249 1 1244 231 36 0 0 chr12 86432682 86432710 -34824820 + (GTGTG)n Simple_repeat Simple_repeat 3 30 0 1 1244 469 265 145 27 chr12 86433006 86433192 -34824338 - B4A SINE B4 -84 208 1 1 1244 624 181 29 29 chr12 86433764 86433901 -34823629 + B1_Mus1 SINE Alu 12 148 0 1 1244 598 229 0 0 chr12 86433944 86434062 -34823468 + B1_Mus1 SINE Alu 1 118 -30 1 1244 343 320 45 38 chr12 86433949 86434082 -34823448 + B4 SINE B4 90 223 -69 1 1244 718 149 52 15 chr12 86434206 86434342 -34823188 - B1_Mus1 SINE Alu 0 148 8 1 1244 505 229 64 7 chr12 86434820 86434961 -34822569 + B1F SINE Alu 1 149 0 1 1244 372 277 27 0 chr12 86436611 86436723 -34820807 - MER5A1 DNA MER1_type -3 163 49 1 1244 701 199 7 27 chr12 86436807 86436957 -34820573 + B1_Mur2 SINE Alu 1 147 -2 1 1244 1151 97 50 33 chr12 86437149 86437331 -34820199 + B2_Mm2 SINE B2 2 186 -9 1 1244 614 207 0 16 chr12 86437398 86437521 -34820009 - ID_B1 SINE B4 -13 211 91 1 1244 584 247 118 2 chr12 86438236 86438418 -34819112 + B4A SINE B4 1 204 -88 1 1244 576 91 0 0 chr12 86438419 86438507 -34819023 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1244 260 238 12 59 chr12 86438788 86438817 -34818713 + ID_B1 SINE B4 137 217 -7 1 1244 332 109 18 18 chr12 86438817 86438873 -34818657 + B1F1 SINE Alu 87 142 -7 1 1244 1369 69 0 78 chr12 86438875 86439079 -34818451 - B2_Mm2 SINE B2 -6 189 2 1 1244 487 75 0 0 chr12 86439099 86439166 -34818364 + L1_Mus2 LINE L1 6498 6564 -2 1 1244 1079 73 0 0 chr12 86439167 86439303 -34818227 + B1_Mus2 SINE Alu 1 136 -11 1 1244 333 0 0 0 chr12 86439303 86439340 -34818190 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1244 930 151 14 7 chr12 86439435 86439582 -34817948 + B1_Mur3 SINE Alu 1 148 -1 1 1244 200 281 18 0 chr12 86439759 86439816 -34817714 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1244 368 261 18 29 chr12 86439831 86439959 -34817571 - B3A SINE B2 -11 205 88 1 1244 531 238 70 99 chr12 86440632 86440833 -34816697 + B3A SINE B2 1 195 -3 1 1244 429 303 0 14 chr12 86440840 86440987 -34816543 + ID_B1 SINE B4 76 220 -4 1 1244 400 259 27 0 chr12 86440988 86441100 -34816430 + MER2 DNA MER2_type 87 201 -144 1 1244 457 160 206 9 chr12 86441210 86441317 -34816213 + B1_Mur1 SINE Alu 17 144 -5 1 1244 273 98 0 0 chr12 86441399 86441440 -34816090 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1244 498 200 182 8 chr12 86441561 86441687 -34815843 - B1_Mur2 SINE Alu 0 149 2 1 1244 226 289 62 31 chr12 86441713 86441762 -34815768 - B2_Mm2 SINE B2 -1 194 30 1 1244 581 207 45 0 chr12 86441762 86441873 -34815657 - RSINE1 SINE B4 -19 146 31 1 1244 26 50 0 0 chr12 86442494 86442534 -34814996 + AT_rich Low_complexity Low_complexity 1 40 0 1 1244 481 135 32 43 chr12 86442573 86442666 -34814864 + B1_Mur2 SINE Alu 51 142 -7 1 1244 225 0 0 0 chr12 86443102 86443127 -34814403 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 1 1244 191 36 36 0 chr12 86443144 86443172 -34814358 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1244 402 292 0 65 chr12 86443175 86443314 -34814216 - B3 SINE B2 -50 166 37 1 1244 186 209 0 0 chr12 86443416 86443459 -34814071 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1244 569 281 184 16 chr12 86444166 86444416 -34813114 + B4A SINE B4 1 292 0 1 1244 205 205 0 0 chr12 86444422 86444461 -34813069 + (CATA)n Simple_repeat Simple_repeat 3 41 0 1 1244 521 170 52 118 chr12 86444770 86444923 -34812607 + B1F SINE Alu 3 145 -4 1 1244 616 175 10 0 chr12 86444929 86445026 -34812504 + RSINE1 SINE B4 3 100 -65 1 1244 288 210 0 31 chr12 86447975 86448039 -34809491 + B3 SINE B2 9 70 -146 1 1244 346 322 33 8 chr12 86448067 86448189 -34809341 + L1ME3B LINE L1 5814 5938 -302 1 1244 393 117 0 0 chr12 86448384 86448444 -34809086 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1244 195 162 0 0 chr12 86448460 86448497 -34809033 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1244 40 21 0 0 chr12 86448667 86448714 -34808816 + AT_rich Low_complexity Low_complexity 1 47 0 1 1244 1458 140 14 0 chr12 86448811 86449033 -34808497 + URR1B DNA MER1_type 1 225 0 1 1244 362 262 0 70 chr12 86449214 86449300 -34808230 - ID4 SINE ID -1 82 3 1 1244 230 171 0 0 chr12 86449307 86449342 -34808188 - PB1 SINE Alu -7 120 86 1 1244 401 133 13 0 chr12 86449349 86449424 -34808106 + (TTCTCC)n Simple_repeat Simple_repeat 5 80 0 1 1244 291 158 140 0 chr12 86449660 86449717 -34807813 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 1 1244 788 220 31 20 chr12 86449943 86450138 -34807392 - B3A SINE B2 -1 197 1 1 1244 196 300 105 58 chr12 86450411 86450687 -34806843 - L2 LINE L2 -468 2951 2663 1 1244 1099 152 22 0 chr12 86451248 86451426 -34806104 - URR1A DNA MER1_type -28 198 17 1 1244 320 206 96 0 chr12 86452669 86452742 -34804788 - ID4_ SINE ID -2 81 2 1 1244 191 266 159 72 chr12 86452761 86452830 -34804700 - L2c LINE L2 -40 3386 3312 1 1244 507 228 162 12 chr12 86453145 86453305 -34804225 - B3A SINE B2 0 198 15 1 1244 575 201 70 28 chr12 86453443 86453586 -34803944 - B1F2 SINE Alu 0 149 1 1 1244 904 254 5 29 chr12 86453854 86454061 -34803469 - ID_B1 SINE B4 -14 210 9 1 1244 404 344 88 33 chr12 86454117 86454465 -34803065 - L2c LINE L2 -75 3312 2948 1 1244 197 361 16 47 chr12 86454682 86454810 -34802720 + MIRc SINE MIR 138 261 -7 1 1244 213 39 0 0 chr12 86455027 86455053 -34802477 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1244 207 149 0 60 chr12 86455144 86455194 -34802336 + CT-rich Low_complexity Low_complexity 3 49 0 1 1244 1266 48 0 0 chr12 86455365 86455512 -34802018 + B1_Mus2 SINE Alu 1 147 0 1 1244 411 73 0 0 chr12 86455512 86455567 -34801963 + (GAAA)n Simple_repeat Simple_repeat 3 57 0 1 1244 365 168 416 0 chr12 86457059 86457160 -34800370 - B1_Mus2 SINE Alu -4 143 1 1 1244 396 236 74 19 chr12 86457676 86457784 -34799746 - RSINE1 SINE B4 -49 116 3 1 1244 587 194 186 0 chr12 86457878 86458002 -34799528 - B1_Mus1 SINE Alu 0 148 2 1 1244 620 200 53 8 chr12 86458307 86458438 -34799092 + B1_Mur2 SINE Alu 13 149 0 1 1244 224 137 20 0 chr12 86458763 86458814 -34798716 + T-rich Low_complexity Low_complexity 2 53 0 1 1244 225 268 14 40 chr12 86459129 86459203 -34798327 + MER5A DNA MER1_type 91 162 -27 1 1244 560 68 0 0 chr12 86460554 86460627 -34796903 + BC1_Mm scRNA scRNA 1 73 -79 1 1244 271 263 74 0 chr12 86460627 86460649 -34796881 + B4A SINE B4 1 102 -190 1 1244 301 303 42 79 chr12 86460726 86460891 -34796639 - MER5B DNA MER1_type -19 159 1 1 1244 360 43 0 0 chr12 86460936 86460982 -34796548 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1244 532 299 51 0 chr12 86460986 86461123 -34796407 - RSINE1 SINE B4 -11 154 11 1 1244 763 250 72 6 chr12 86461492 86461673 -34795857 + B3A SINE B2 1 193 -5 1 1244 23 33 0 0 chr12 86461679 86461709 -34795821 + AT_rich Low_complexity Low_complexity 1 30 0 1 1244 1118 161 0 25 chr12 86461710 86461907 -34795623 - B2_Mm2 SINE B2 -3 192 1 1 1244 503 132 349 0 chr12 86461951 86462057 -34795473 + B1_Mur4 SINE Alu 2 144 -6 1 1244 1212 21 7 58 chr12 86462063 86462218 -34795312 + B1_Mus2 SINE Alu 1 147 0 1 1244 1016 205 50 14 chr12 86462383 86462601 -34794929 + URR1A DNA MER1_type 1 226 0 1 1244 279 0 0 0 chr12 86462899 86462930 -34794600 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1244 936 306 75 49 chr12 86463097 86463444 -34794086 - MTEa LTR MaLR -23 356 1 1 1244 189 326 123 22 chr12 86463533 86463671 -34793859 + MIR SINE MIR 48 199 -63 1 1244 180 280 74 74 chr12 86463903 86463984 -34793546 - MIR SINE MIR -88 120 40 1 1244 307 231 0 15 chr12 86464572 86464638 -34792892 + PB1D9 SINE Alu 1 65 -55 1 1244 277 295 12 25 chr12 86464638 86464652 -34792878 + B4A SINE B4 86 164 -128 1 1244 439 242 127 21 chr12 86465138 86465292 -34792238 - B3A SINE B2 0 216 49 1 1244 958 159 0 7 chr12 86465316 86465455 -34792075 - B1_Mur1 SINE Alu -7 142 5 1 1244 343 150 33 0 chr12 86465482 86465542 -34791988 - ID_B1 SINE B4 -8 216 155 1 1244 207 88 0 0 chr12 86465778 86465812 -34791718 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1244 1004 263 23 76 chr12 86465851 86466114 -34791416 - B4 SINE B4 -3 289 41 1 1244 1283 21 0 7 chr12 86466374 86466520 -34791010 + B1_Mus2 SINE Alu 2 146 -1 1 1244 388 252 169 35 chr12 86466648 86466670 -34790860 + ID_B1 SINE B4 57 224 -68 1 1244 328 304 16 87 chr12 86466670 86466796 -34790734 + PB1D10 SINE Alu 1 117 0 1 1244 258 56 0 0 chr12 86466903 86466939 -34790591 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 1 1244 216 0 0 0 chr12 86467933 86467957 -34789573 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1 1244 187 250 11 126 chr12 86468096 86468183 -34789347 + L2c LINE L2 3296 3372 -15 1 1244 287 299 36 13 chr12 86468575 86468676 -34788854 + PB1D10 SINE Alu 11 121 -6 1 1244 28 48 0 0 chr12 86469063 86469105 -34788425 + AT_rich Low_complexity Low_complexity 1 42 0 1 1244 213 39 0 0 chr12 86470027 86470053 -34787477 + (TTTTC)n Simple_repeat Simple_repeat 1 26 0 1 1244 605 14 0 13 chr12 86470053 86470127 -34787403 + (TCCCC)n Simple_repeat Simple_repeat 4 77 0 1 1244 237 33 0 0 chr12 86470141 86470171 -34787359 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1244 1227 66 0 0 chr12 86470173 86470325 -34787205 - B2_Mm2 SINE B2 -43 152 1 1 1244 1155 194 127 49 chr12 86470853 86471200 -34786330 - ORR1D1 LTR MaLR 0 374 1 1 1244 308 221 103 0 chr12 86472134 86472202 -34785328 + MER5A DNA MER1_type 1 75 -114 1 1244 699 279 89 0 chr12 86472202 86472392 -34785138 + B3 SINE B2 2 208 -8 1 1244 519 179 53 0 chr12 86472824 86472919 -34784611 - B1_Mur3 SINE Alu -7 142 43 1 1244 234 0 0 0 chr12 86472978 86473004 -34784526 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1244 369 0 0 0 chr12 86473082 86473123 -34784407 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 1244 369 0 0 0 chr12 86473199 86473240 -34784290 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 1244 390 129 0 0 chr12 86476256 86476318 -34781212 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1244 981 189 0 3 chr12 86478436 86478751 -34778779 + (TG)n Simple_repeat Simple_repeat 1 313 0 1 1244 664 249 29 35 chr12 86478772 86478943 -34778587 - B4A SINE B4 -121 171 2 1 1244 555 157 37 66 chr12 86482261 86482400 -34775130 + PB1D9 SINE Alu 11 150 0 1 1244 652 216 11 11 chr12 86482943 86483121 -34774409 + (CGTG)n Simple_repeat Simple_repeat 1 178 0 1 1244 275 241 0 0 chr12 86483121 86483175 -34774355 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1244 1159 208 61 88 chr12 86483175 86483212 -34774318 - B4A SINE B4 0 292 271 1 1244 261 57 0 0 chr12 86483212 86483247 -34774283 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 1 1244 1159 208 61 88 chr12 86483247 86483504 -34774026 - B4A SINE B4 -22 270 6 1 1244 240 368 21 21 chr12 86483706 86483803 -34773727 - MIR SINE MIR -135 127 31 1 1244 257 225 24 48 chr12 86484249 86484333 -34773197 + L1ME4a LINE L1 5977 6058 -66 1 1244 1011 240 39 0 chr12 86484511 86484719 -34772811 + ID_B1 SINE B4 1 216 -8 1 1244 926 53 0 0 chr12 86484934 86485047 -34772483 - B2_Mm2 SINE B2 -81 114 2 1 1244 638 67 9 28 chr12 86485107 86485215 -34772315 + (TTCTC)n Simple_repeat Simple_repeat 5 110 0 1 1244 1198 56 0 0 chr12 86485218 86485360 -34772170 - B1_Mus1 SINE Alu -6 142 1 1 1244 1050 133 67 0 chr12 86485365 86485545 -34771985 - B2_Mm2 SINE B2 -3 192 1 1 1244 776 157 23 16 chr12 86485632 86485761 -34771769 - B1_Mur1 SINE Alu -18 131 2 1 1244 323 315 60 27 chr12 86485806 86485956 -34771574 - MER102b DNA MER1_type -59 282 128 1 1244 197 244 0 0 chr12 86487195 86487240 -34770290 + MIR SINE MIR 100 144 -118 1 1244 234 0 0 0 chr12 86488364 86488390 -34769140 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1244 992 127 198 23 chr12 86489809 86489986 -34767544 + B3 SINE B2 5 212 -4 1 1244 1374 58 0 6 chr12 86490006 86490179 -34767351 + B2_Mm2 SINE B2 2 173 -22 1 1244 270 136 0 0 chr12 86490182 86490226 -34767304 + (GGA)n Simple_repeat Simple_repeat 3 46 0 1 1244 219 293 183 0 chr12 86490246 86490328 -34767202 + PB1D10 SINE Alu 15 111 -6 1 1244 213 281 75 37 chr12 86490335 86490442 -34767088 + MIR SINE MIR 139 249 -13 1 1244 272 286 26 13 chr12 86492825 86492903 -34764627 - RSINE1 SINE B4 -85 80 2 1 1244 735 225 208 0 chr12 86492951 86493129 -34764401 - B3 SINE B2 0 216 2 1 1244 903 180 80 23 chr12 86493158 86493172 -34764358 - ORR1C2 LTR MaLR -198 186 173 1 1244 982 28 41 7 chr12 86493172 86493317 -34764213 + (GAGAA)n Simple_repeat Simple_repeat 2 151 0 1 1244 903 180 80 23 chr12 86493317 86493478 -34764052 - ORR1C2 LTR MaLR -212 172 1 1 1244 836 305 54 0 chr12 86493480 86493814 -34763716 + L1M4 LINE L1 5288 5639 -535 1 1244 358 224 0 0 chr12 86493885 86493961 -34763569 - B1_Mur4 SINE Alu -74 76 1 1 1244 860 180 44 17 chr12 86493973 86494154 -34763376 - B3A SINE B2 -11 187 2 1 1244 600 247 38 45 chr12 86494183 86494340 -34763190 - RSINE1 SINE B4 0 165 10 1 1244 225 0 0 0 chr12 86494357 86494382 -34763148 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1 1244 189 0 0 0 chr12 86494393 86494414 -34763116 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1 1244 453 36 0 0 chr12 86494419 86494474 -34763056 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1 1244 1154 68 0 46 chr12 86494474 86494488 -34763042 - B1_Mus1 SINE Alu -2 146 139 1 1244 279 0 0 0 chr12 86494488 86494519 -34763011 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1244 1154 68 0 46 chr12 86494519 86494657 -34762873 - B1_Mus1 SINE Alu -10 138 1 1 1244 5612 60 7 1 chr12 86494657 86495353 -34762177 - L1_Mus3 LINE L1 -15 6623 5924 1 1244 947 176 0 0 chr12 86495390 86495543 -34761987 - B3A SINE B2 -44 154 2 1 1244 201 387 89 21 chr12 86495668 86495858 -34761672 + L2 LINE L2 2557 2759 -660 1 1244 282 206 0 0 chr12 86495866 86495934 -34761596 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1244 564 269 122 14 chr12 86495934 86496081 -34761449 - RSINE1 SINE B4 0 165 3 1 1244 243 356 108 10 chr12 86496091 86496193 -34761337 - PB1D7 SINE Alu -8 112 1 1 1244 1019 205 24 33 chr12 86496228 86496440 -34761090 + B3 SINE B2 1 210 -6 1 1244 680 35 11 0 chr12 86496855 86496942 -34760588 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1244 369 291 91 19 chr12 86496967 86497121 -34760409 + L2a LINE L2 3262 3426 0 1 1244 451 345 77 24 chr12 86497397 86497566 -34759964 + MLT1I LTR MaLR 42 219 -192 1 1244 1627 21 21 0 chr12 86497808 86497997 -34759533 - B2_Mm1a SINE B2 0 193 1 1 1244 728 174 207 6 chr12 86498161 86498340 -34759190 - B3 SINE B2 -1 215 1 1 1244 287 318 0 45 chr12 86498918 86499007 -34758523 - Tigger7 DNA MER2_type 0 2491 2407 1 1244 1035 263 38 66 chr12 86499002 86499291 -34758239 - Tigger7 DNA MER2_type -2198 293 13 1 1244 694 178 43 22 chr12 86499615 86499753 -34757777 - B1_Mur3 SINE Alu -6 143 3 1 1244 284 240 143 20 chr12 86500981 86501079 -34756451 - PB1D10 SINE Alu -5 112 3 1 1244 1695 31 0 0 chr12 86501149 86501341 -34756189 - B2_Mm1a SINE B2 -1 192 1 2 1244 239 398 9 9 chr12 86501344 86501453 -34756077 - BC1_Mm scRNA scRNA -42 110 2 3 1244 207 157 21 63 chr12 86501461 86501556 -34755974 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 4 1244 987 213 52 47 chr12 86501579 86501791 -34755739 - B3 SINE B2 -3 213 1 5 1244 925 187 0 7 chr12 86502408 86502559 -34754971 + B1_Mur4 SINE Alu 1 150 0 6 1244 236 374 9 53 chr12 86502917 86503030 -34754500 - MLT1G3 LTR MaLR -51 544 437 7 1244 28 0 0 0 chr12 86503047 86503075 -34754455 + AT_rich Low_complexity Low_complexity 1 28 0 8 1244 959 152 205 0 chr12 86503086 86503257 -34754273 + B3 SINE B2 1 206 -10 9 1244 23 0 0 0 chr12 86503257 86503280 -34754250 + AT_rich Low_complexity Low_complexity 1 23 0 1 1244 1124 103 0 6 chr12 86503332 86503507 -34754023 + (TTCC)n Simple_repeat Simple_repeat 4 177 0 1 1244 242 254 15 0 chr12 86503530 86503597 -34753933 - B3A SINE B2 -130 68 1 1 1244 528 249 82 50 chr12 86503603 86503785 -34753745 - B3A SINE B2 -6 192 5 1 1244 1197 119 0 0 chr12 86504147 86504468 -34753062 + (TTCC)n Simple_repeat Simple_repeat 1 321 0 1 1244 508 239 35 17 chr12 86504471 86504586 -34752944 - PB1D10 SINE Alu 0 117 1 1 1244 24 53 0 0 chr12 86504599 86504637 -34752893 + AT_rich Low_complexity Low_complexity 1 38 0 1 1244 494 262 7 67 chr12 86504690 86504817 -34752713 - RSINE1 SINE B4 0 165 47 1 1244 1984 116 118 3 chr12 86504817 86505163 -34752367 + ORR1B1 LTR MaLR 1 386 -8 1 1244 252 167 0 0 chr12 86505251 86505299 -34752231 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 1 1244 1046 222 0 5 chr12 86505299 86505498 -34752032 - B3 SINE B2 -14 202 5 2 1244 352 196 52 78 chr12 86506370 86506415 -34751115 + URR1B DNA MER1_type 110 153 -72 2 1244 1424 86 16 0 chr12 86506415 86506602 -34750928 + B2_Mm2 SINE B2 3 192 -3 2 1244 352 196 52 78 chr12 86506602 86506672 -34750858 + URR1B DNA MER1_type 154 222 -3 2 1245 300 260 41 0 chr12 86508786 86508859 -34748671 - ID4_ SINE ID -6 77 2 2 1245 816 155 49 7 chr12 86509045 86509188 -34748342 + B1_Mur4 SINE Alu 1 149 -1 2 1245 29 0 0 0 chr12 86509192 86509221 -34748309 + AT_rich Low_complexity Low_complexity 1 29 0 2 1245 837 99 0 0 chr12 86509221 86509342 -34748188 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 2 1245 291 206 43 14 chr12 86509361 86509430 -34748100 + PB1D10 SINE Alu 47 117 0 2 1245 180 0 0 0 chr12 86510047 86510067 -34747463 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 1245 1013 47 70 0 chr12 86510067 86510195 -34747335 - B1_Mm SINE Alu -9 138 2 2 1245 216 392 0 0 chr12 86511571 86511650 -34745880 + L2a LINE L2 3339 3417 -9 3 1245 268 320 40 50 chr12 86513696 86513907 -34743623 + MIR3 SINE MIR 5 208 0 3 1245 239 272 0 90 chr12 86515606 86515695 -34741835 - MIR3 SINE MIR -15 193 113 3 1245 204 205 43 6 chr12 86516842 86516896 -34740634 + MIRm SINE MIR 98 151 -57 3 1245 198 0 0 0 chr12 86517990 86518012 -34739518 + (GGAGA)n Simple_repeat Simple_repeat 3 24 0 3 1245 228 275 38 0 chr12 86518631 86518711 -34738819 - MIRc SINE MIR -74 194 112 3 1245 671 212 58 58 chr12 86519832 86519987 -34737543 - RSINE1 SINE B4 -8 157 3 3 1245 198 0 0 0 chr12 86520602 86520624 -34736906 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1245 963 111 0 0 chr12 86520624 86520831 -34736699 + (GA)n Simple_repeat Simple_repeat 1 207 0 3 1245 276 330 28 0 chr12 86521206 86521312 -34736218 - MIR SINE MIR -13 249 141 3 1245 335 330 18 0 chr12 86521556 86521668 -34735862 + PB1D10 SINE Alu 1 114 -3 4 1245 259 354 73 90 chr12 86521831 86522064 -34735466 + L2c LINE L2 3142 3370 -17 4 1245 257 328 62 15 chr12 86523509 86523639 -34733891 - MIRb SINE MIR -61 207 72 4 1245 636 195 0 0 chr12 86523744 86523913 -34733617 + CT-rich Low_complexity Low_complexity 2 170 0 4 1245 210 71 0 0 chr12 86523933 86523961 -34733569 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1245 496 241 25 49 chr12 86524326 86524448 -34733082 + PB1D10 SINE Alu 10 129 -21 4 1245 274 59 0 0 chr12 86524448 86524482 -34733048 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 4 1245 682 182 0 38 chr12 86524484 86524667 -34732863 + GA-rich Low_complexity Low_complexity 5 180 0 4 1245 543 280 0 0 chr12 86524679 86524804 -34732726 + RSINE1 SINE B4 3 127 -38 4 1245 342 0 0 0 chr12 86524805 86524843 -34732687 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1245 522 264 9 0 chr12 86524882 86524992 -34732538 + RSINE1 SINE B4 26 136 -29 5 1245 682 210 49 0 chr12 86525786 86525929 -34731601 + ID_B1 SINE B4 72 221 -3 5 1245 409 117 39 0 chr12 86525929 86526006 -34731524 + GA-rich Low_complexity Low_complexity 1 80 0 5 1245 340 337 64 60 chr12 86527555 86527773 -34729757 - MIRb SINE MIR -25 243 25 5 1245 776 161 0 27 chr12 86527926 86528111 -34729419 + CT-rich Low_complexity Low_complexity 1 180 0 5 1245 435 106 0 0 chr12 86528232 86528298 -34729232 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1245 255 250 125 107 chr12 86528839 86528951 -34728579 - RSINE1 SINE B4 -44 121 8 5 1245 933 236 37 5 chr12 86528965 86529182 -34728348 - B4A SINE B4 -68 224 1 5 1245 344 269 167 8 chr12 86529198 86529318 -34728212 - B1F SINE Alu -1 148 10 5 1245 1164 127 0 47 chr12 86529352 86529378 -34728152 - B2_Mm2 SINE B2 -13 182 161 5 1245 240 35 0 0 chr12 86529378 86529407 -34728123 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 1245 1164 127 0 47 chr12 86529407 86529570 -34727960 - B2_Mm2 SINE B2 -35 160 2 5 1245 329 255 92 0 chr12 86529633 86529731 -34727799 - MER113 DNA MER1_type -236 285 179 6 1245 422 193 0 52 chr12 86529846 86529988 -34727542 - B2_Mm2 SINE B2 -75 141 16 6 1245 228 326 42 32 chr12 86529988 86530083 -34727447 - MLT1A1 LTR MaLR 0 408 313 6 1245 768 192 0 64 chr12 86530163 86530319 -34727211 + B1_Mur3 SINE Alu 1 146 -3 6 1245 25 0 0 0 chr12 86530328 86530353 -34727177 + AT_rich Low_complexity Low_complexity 1 25 0 6 1245 847 236 67 0 chr12 86530440 86530635 -34726895 + B3 SINE B2 3 210 -6 6 1245 363 219 0 146 chr12 86530639 86530762 -34726768 + MT2B LTR ERVL 153 257 -344 6 1245 835 139 0 0 chr12 86530657 86530786 -34726744 + B1_Mur4 SINE Alu 1 129 -21 6 1245 387 0 0 0 chr12 86530786 86530829 -34726701 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1245 636 282 75 0 chr12 86530960 86531148 -34726382 + ID_B1 SINE B4 16 217 -7 7 1245 219 318 0 15 chr12 86531504 86531571 -34725959 + GA-rich Low_complexity Low_complexity 3 68 0 7 1245 1014 205 108 0 chr12 86531578 86531773 -34725757 + B3 SINE B2 1 216 0 7 1245 943 186 74 20 chr12 86531837 86532040 -34725490 + B3 SINE B2 3 216 0 7 1245 440 223 23 0 chr12 86532260 86532435 -34725095 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1245 363 235 18 0 chr12 86532463 86532629 -34724901 + (CA)n Simple_repeat Simple_repeat 2 170 0 7 1245 314 267 40 0 chr12 86532629 86532704 -34724826 + MER5A1 DNA MER1_type 76 153 -13 7 1245 533 250 204 23 chr12 86532879 86533055 -34724475 - ID_B1 SINE B4 -2 222 15 7 1245 237 256 0 114 chr12 86533120 86533208 -34724322 + BC1_Mm scRNA scRNA 3 80 -72 7 1245 859 303 34 4 chr12 86534263 86534487 -34723043 + B4A SINE B4 4 234 -58 7 1245 653 254 62 26 chr12 86534487 86534681 -34722849 + B3A SINE B2 3 203 -13 7 1245 283 284 0 31 chr12 86537785 86537883 -34719647 + PB1D10 SINE Alu 11 105 -12 8 1245 516 93 0 0 chr12 86539438 86539513 -34718017 + (TCCA)n Simple_repeat Simple_repeat 1 75 0 8 1245 242 313 0 29 chr12 86539539 86539641 -34717889 + (TCCA)n Simple_repeat Simple_repeat 1 99 0 8 1245 973 228 24 0 chr12 86539717 86539923 -34717607 - B3 SINE B2 0 216 6 8 1245 222 193 0 0 chr12 86540985 86541042 -34716488 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1245 738 209 0 0 chr12 86541053 86541409 -34716121 + (CA)n Simple_repeat Simple_repeat 1 356 0 8 1245 762 184 0 0 chr12 86541422 86541601 -34715929 + (CA)n Simple_repeat Simple_repeat 1 179 0 8 1245 538 209 94 33 chr12 86543776 86543930 -34713600 + B3 SINE B2 47 213 -3 8 1245 589 201 70 3 chr12 86544758 86544906 -34712624 + L1MB3 LINE L1 5754 5907 -2088 8 1245 238 234 16 0 chr12 86544913 86544977 -34712553 + L1MB3 LINE L1 6019 6083 -97 8 1245 551 308 88 56 chr12 86544983 86545323 -34712207 - ORR1E LTR MaLR 0 359 9 8 1245 468 0 0 0 chr12 86546661 86546713 -34710817 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1245 331 319 11 0 chr12 86546813 86546907 -34710623 + PB1D10 SINE Alu 6 100 -17 8 1245 297 109 0 0 chr12 86547245 86547300 -34710230 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1245 307 280 48 48 chr12 86547310 86547415 -34710115 - B3A SINE B2 -69 129 25 9 1245 313 232 155 47 chr12 86547528 86547759 -34709771 - Lx7 LINE L1 -1540 5933 5626 9 1245 406 89 51 0 chr12 86548732 86548811 -34708719 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 9 1245 987 80 0 0 chr12 86548828 86548966 -34708564 + B1_Mus2 SINE Alu 9 146 -1 9 1245 281 169 0 17 chr12 86548966 86549010 -34708520 + polypurine Low_complexity Low_complexity 1 44 0 9 1245 1068 141 0 0 chr12 86549010 86549187 -34708343 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 9 1245 281 169 0 17 chr12 86549187 86549202 -34708328 + polypurine Low_complexity Low_complexity 45 59 0 9 1245 265 217 0 77 chr12 86550616 86550681 -34706849 - MLT1J LTR MaLR -368 144 85 9 1245 1262 102 22 11 chr12 86550815 86550994 -34706536 - B2_Mm2 SINE B2 -14 181 1 9 1245 1703 132 103 15 chr12 86551143 86551473 -34706057 - MTC LTR MaLR 0 421 63 9 1245 1002 41 0 0 chr12 86551485 86551608 -34705922 + (TCC)n Simple_repeat Simple_repeat 3 125 0 1 1245 882 123 0 7 chr12 86551615 86551754 -34705776 - B1_Mus1 SINE Alu -1 147 10 1 1245 352 148 16 0 chr12 86551761 86551822 -34705708 - MTC LTR MaLR -341 80 19 9 1245 28 0 0 0 chr12 86551838 86551866 -34705664 + AT_rich Low_complexity Low_complexity 1 28 0 1 1245 309 26 0 0 chr12 86551867 86551905 -34705625 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1 1245 291 162 0 39 chr12 86551915 86551982 -34705548 - B2_Mm2 SINE B2 -107 109 47 1 1245 1269 114 11 0 chr12 86552049 86552224 -34705306 - B2_Mm1t SINE B2 -14 179 3 1 1245 342 0 0 0 chr12 86552242 86552280 -34705250 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1245 614 267 135 5 chr12 86552283 86552490 -34705040 + B4A SINE B4 58 291 -1 1 1245 660 229 12 54 chr12 86552596 86552762 -34704768 + RSINE1 SINE B4 7 165 0 1 1245 21 57 0 0 chr12 86552944 86552979 -34704551 + AT_rich Low_complexity Low_complexity 1 35 0 1 1245 428 297 126 53 chr12 86553086 86553349 -34704181 - B4 SINE B4 -2 290 9 1 1245 410 280 50 92 chr12 86553402 86553616 -34703914 - L1MD LINE L1 -430 5812 5604 1 1245 550 199 118 30 chr12 86553616 86553751 -34703779 - B1_Mur4 SINE Alu -1 149 3 1 1245 410 280 50 92 chr12 86553751 86553796 -34703734 - L1MD LINE L1 -639 5603 5564 1 1245 547 269 15 15 chr12 86553810 86553937 -34703593 + ID_B1 SINE B4 85 213 -11 1 1245 384 40 0 0 chr12 86553937 86553987 -34703543 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 1 1245 316 176 27 81 chr12 86554041 86554115 -34703415 - HAL1-3A_ME LINE L1 -813 2045 1976 1 1245 419 319 109 23 chr12 86554176 86554442 -34703088 - B4 SINE B4 -3 289 1 1 1245 568 304 6 25 chr12 86554558 86554720 -34702810 - RSINE1 SINE B4 -3 162 4 1 1245 1065 262 13 60 chr12 86554820 86555120 -34702410 + B4A SINE B4 1 286 -6 1 1245 1267 47 0 0 chr12 86555459 86555607 -34701923 + B1_Mus1 SINE Alu 1 148 0 1 1245 675 204 0 27 chr12 86555640 86555786 -34701744 + B1_Mur1 SINE Alu 8 149 0 1 1245 749 218 30 6 chr12 86555792 86555958 -34701572 - MTD LTR MaLR -134 285 116 1 1245 320 305 0 28 chr12 86555959 86556067 -34701463 + ID_B1 SINE B4 79 183 -41 1 1245 545 156 0 0 chr12 86555978 86556068 -34701462 + B1_Mur3 SINE Alu 17 106 -43 1 1245 333 289 0 35 chr12 86556073 86556159 -34701371 - MTD LTR MaLR -319 100 18 1 1245 256 296 79 35 chr12 86556603 86556862 -34700668 - L1MC LINE L1 -1375 4771 4499 1 1245 418 308 0 0 chr12 86556862 86556969 -34700561 - B3 SINE B2 -108 108 2 1 1245 1372 56 62 0 chr12 86556976 86557154 -34700376 - B2_Mm2 SINE B2 -6 189 1 1 1245 276 268 149 63 chr12 86557358 86557533 -34699997 + B3 SINE B2 27 216 0 1 1245 295 324 88 7 chr12 86558325 86558462 -34699068 + L1M5 LINE L1 5370 5517 -723 1 1245 1716 237 96 41 chr12 86558464 86559144 -34698386 + RMER1A Other Other 8 531 -499 1 1245 330 303 83 21 chr12 86559160 86559305 -34698225 - L1MD LINE L1 -2344 3802 3649 1 1245 1139 82 0 0 chr12 86559727 86559874 -34697656 - B1_Mus1 SINE Alu -1 147 1 1 1245 250 286 56 14 chr12 86559958 86560029 -34697501 + ID4 SINE ID 2 75 -8 1 1245 216 0 0 0 chr12 86561417 86561441 -34696089 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 1 1245 395 169 113 0 chr12 86561454 86561525 -34696005 + ID4_ SINE ID 4 82 -1 1 1245 222 37 0 0 chr12 86561611 86561638 -34695892 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1245 389 294 25 16 chr12 86561638 86561759 -34695771 - RSINE1 SINE B4 -42 123 2 1 1245 991 214 39 19 chr12 86561846 86562051 -34695479 + B3 SINE B2 1 209 -7 1 1245 344 239 0 224 chr12 86562706 86562782 -34694748 + ID_B1 SINE B4 83 211 -13 1 1245 650 120 20 10 chr12 86562782 86562883 -34694647 + B1_Mur2 SINE Alu 42 143 -6 1 1245 796 173 18 0 chr12 86562890 86563058 -34694472 + GA-rich Low_complexity Low_complexity 4 174 0 1 1245 598 223 7 39 chr12 86563058 86563212 -34694318 + B1_Mur1 SINE Alu 1 149 0 1 1245 195 42 0 0 chr12 86564959 86564983 -34692547 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1245 941 148 0 0 chr12 86564985 86565120 -34692410 - B1_Mur4 SINE Alu -15 135 1 1 1245 670 212 39 107 chr12 86565129 86565333 -34692197 - B3 SINE B2 -10 185 1 1 1245 240 35 0 0 chr12 86565571 86565600 -34691930 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1245 496 207 90 62 chr12 86565900 86566044 -34691486 + B1F1 SINE Alu 1 148 -1 1 1245 849 243 9 27 chr12 86566464 86566684 -34690846 - B3 SINE B2 0 216 1 1 1245 1373 91 38 0 chr12 86567642 86567828 -34689702 + B2_Mm2 SINE B2 3 195 0 1 1245 306 315 55 0 chr12 86570032 86570105 -34687425 + RSINE1 SINE B4 85 161 -4 1 1245 23 0 0 0 chr12 86570111 86570134 -34687396 + AT_rich Low_complexity Low_complexity 1 23 0 1 1245 324 295 19 9 chr12 86570208 86570314 -34687216 - BC1_Mm scRNA scRNA -41 111 5 1 1245 365 236 78 52 chr12 86570747 86570863 -34686667 + PB1D7 SINE Alu 1 119 -1 1 1245 614 190 76 49 chr12 86570867 86571011 -34686519 + B1_Mur3 SINE Alu 2 149 0 1 1245 1008 177 59 77 chr12 86571021 86571241 -34686289 + B3 SINE B2 1 216 0 1 1245 211 184 0 0 chr12 86571477 86571515 -34686015 + GA-rich Low_complexity Low_complexity 2 39 0 1 1245 336 232 0 14 chr12 86571849 86571919 -34685611 - PB1D10 SINE Alu -44 73 5 1 1245 290 191 29 29 chr12 86571859 86571929 -34685601 + YREP_Mm Unknown Unknown 253 322 -1490 1 1245 913 205 35 15 chr12 86572445 86572648 -34684882 - B3 SINE B2 -5 211 5 1 1245 829 217 30 60 chr12 86573009 86573210 -34684320 + B3A SINE B2 1 195 -3 1 1245 1843 211 50 67 chr12 86573517 86574061 -34683469 + RMER1B Other Other 1 478 -588 1 1245 264 229 139 35 chr12 86574587 86574673 -34682857 + ID_B1 SINE B4 118 212 -12 1 1245 412 186 34 44 chr12 86575573 86575692 -34681838 + B1_Mur4 SINE Alu 2 119 -8 1 1245 437 185 59 92 chr12 86575736 86575855 -34681675 - PB1D10 SINE Alu -2 115 1 1 1245 180 0 0 0 chr12 86575912 86575932 -34681598 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1245 1076 96 0 14 chr12 86575932 86576080 -34681450 - B1_Mus1 SINE Alu -1 147 2 1 1245 327 104 0 0 chr12 86576903 86576951 -34680579 + (TATG)n Simple_repeat Simple_repeat 3 50 0 1 1245 804 245 13 6 chr12 86576951 86577107 -34680423 - B3 SINE B2 -59 157 1 1 1245 1117 203 19 0 chr12 86577291 86577498 -34680032 + B3 SINE B2 1 211 -5 1 1245 189 0 0 0 chr12 86578069 86578090 -34679440 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 1245 1171 195 69 16 chr12 86578090 86578335 -34679195 + MTD LTR MaLR 15 272 -147 1 1245 237 150 127 48 chr12 86578387 86578450 -34679080 + MTD LTR MaLR 312 379 0 1 1245 834 128 13 19 chr12 86578952 86579111 -34678419 + CT-rich Low_complexity Low_complexity 3 160 0 1 1245 1348 109 10 5 chr12 86579111 86579304 -34678226 - B2_Mm2 SINE B2 0 195 2 1 1245 3645 30 7 7 chr12 86579323 86579764 -34677766 - L1Md_F3 LINE L1 0 6584 6144 1 1245 203 327 117 45 chr12 86579861 86580015 -34677515 - L2c LINE L2 -1 3386 3222 1 1245 633 172 0 0 chr12 86580108 86580207 -34677323 + B1_Mus2 SINE Alu 41 139 -8 1 1245 873 76 0 0 chr12 86580219 86580337 -34677193 + (GAA)n Simple_repeat Simple_repeat 2 119 0 1 1245 478 233 20 113 chr12 86580539 86580689 -34676841 + ID_B1 SINE B4 84 219 -5 1 1245 183 273 0 0 chr12 86580769 86580813 -34676717 - L2c LINE L2 -584 2835 2792 1 1245 515 286 7 20 chr12 86580813 86580963 -34676567 + B1F SINE Alu 2 149 0 1 1245 268 273 156 16 chr12 86582035 86582266 -34675264 + L1_Rod LINE L1 5085 5381 -762 1 1245 288 170 0 0 chr12 86582270 86582323 -34675207 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1 1245 891 45 0 0 chr12 86582316 86582428 -34675102 + (TATATG)n Simple_repeat Simple_repeat 2 113 0 1 1245 264 231 51 0 chr12 86582430 86582508 -34675022 + L1_Mur3 LINE L1 5374 5455 -425 1 1245 478 189 118 39 chr12 86582518 86582645 -34674885 + B1_Mur3 SINE Alu 5 141 -8 1 1245 180 77 0 0 chr12 86582646 86582672 -34674858 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 1245 428 301 40 24 chr12 86582753 86583005 -34674525 + L1_Rod LINE L1 5458 5713 -134 1 1245 236 250 16 0 chr12 86583015 86583079 -34674451 + Lx6 LINE L1 5840 5904 -1556 1 1245 276 211 0 0 chr12 86583470 86583527 -34674003 - PB1D10 SINE Alu -21 96 40 1 1245 827 99 34 47 chr12 86583693 86583842 -34673688 - B1_Mm SINE Alu 0 147 1 1 1245 320 88 0 17 chr12 86583909 86583967 -34673563 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1245 352 174 279 0 chr12 86584374 86584460 -34673070 + PB1D9 SINE Alu 2 111 -9 1 1245 1212 54 0 0 chr12 86585033 86585180 -34672350 - B1_Mus2 SINE Alu 0 147 1 1 1245 378 231 6 58 chr12 86585230 86585328 -34672202 - PB1D10 SINE Alu -41 106 10 1 1245 250 245 34 128 chr12 86585248 86585365 -34672165 - MT2B2 LTR ERVL -341 243 138 1 1245 665 264 34 7 chr12 86586060 86586209 -34671321 - RSINE1 SINE B4 -6 159 7 1 1245 882 210 76 22 chr12 86586211 86586396 -34671134 - B3 SINE B2 -21 195 1 1 1245 483 286 89 127 chr12 86587033 86587322 -34670208 + MER44B DNA MER2_type 1 271 -279 1 1245 908 233 24 0 chr12 86587322 86587528 -34670002 - B3 SINE B2 -4 212 2 1 1245 483 286 89 127 chr12 86587528 86587599 -34669931 + MER44B DNA MER2_type 272 347 -203 1 1245 299 284 50 40 chr12 86587639 86587738 -34669792 + MER44B DNA MER2_type 451 550 0 1 1245 350 268 103 40 chr12 86588346 86588521 -34669009 + MIRc SINE MIR 6 191 -77 1 1245 707 206 143 11 chr12 86589070 86589252 -34668278 - B3 SINE B2 -10 206 1 1 1245 590 0 0 14 chr12 86589268 86589339 -34668191 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1245 346 252 19 39 chr12 86589383 86589486 -34668044 - RSINE1 SINE B4 -61 104 4 2 1245 296 48 0 23 chr12 86590280 86590323 -34667207 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 1245 333 157 56 78 chr12 86590704 86590884 -34666646 + (CAGAG)n Simple_repeat Simple_repeat 2 177 0 2 1245 804 215 7 0 chr12 86591449 86591593 -34665937 - B1_Mur1 SINE Alu 0 149 5 2 1245 928 212 113 0 chr12 86591857 86592130 -34665400 - MER58B DNA MER1_type 0 341 45 2 1245 769 265 23 23 chr12 86592291 86592507 -34665023 + B3 SINE B2 1 216 0 2 1245 366 286 75 90 chr12 86592524 86592712 -34664818 - B3A SINE B2 -8 190 6 2 1245 832 298 110 27 chr12 86592991 86593319 -34664211 + MTE2a LTR MaLR 11 365 -14 2 1245 360 0 0 0 chr12 86593532 86593572 -34663958 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1245 696 277 31 47 chr12 86593576 86593769 -34663761 - B4 SINE B4 -23 269 80 2 1245 980 129 14 0 chr12 86593869 86594016 -34663514 - B1_Mur4 SINE Alu 0 150 2 2 1245 871 159 27 20 chr12 86594068 86594216 -34663314 - B1_Mur4 SINE Alu -1 149 1 2 1245 385 234 13 0 chr12 86594336 86594413 -34663117 - B4 SINE B4 -206 86 9 2 1245 261 0 0 0 chr12 86594507 86594536 -34662994 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1245 1177 22 7 0 chr12 86594536 86594673 -34662857 - B1_Mm SINE Alu -9 138 1 2 1245 21 0 0 0 chr12 86594998 86595019 -34662511 + AT_rich Low_complexity Low_complexity 1 21 0 2 1245 616 220 54 54 chr12 86595135 86595284 -34662246 + B1_Mur1 SINE Alu 1 149 0 2 1245 576 243 154 28 chr12 86595408 86595590 -34661940 - ID_B1 SINE B4 -19 205 1 2 1245 749 122 0 0 chr12 86595604 86595711 -34661819 + B2_Mm2 SINE B2 1 107 -88 2 1245 636 14 0 0 chr12 86595796 86595869 -34661661 + (GAGAA)n Simple_repeat Simple_repeat 3 75 0 2 1245 742 178 93 0 chr12 86595905 86596034 -34661496 + B1_Mur4 SINE Alu 2 142 -8 2 1245 447 241 29 2 chr12 86596232 86596355 -34661175 + RSINE1 SINE B4 1 131 -161 2 1245 21 36 0 0 chr12 86596913 86596941 -34660589 + AT_rich Low_complexity Low_complexity 1 28 0 2 1245 1025 321 53 24 chr12 86597001 86597377 -34660153 - MER44B DNA MER2_type -163 387 1 2 1245 280 218 66 44 chr12 86598046 86598137 -34659393 - PB1D7 SINE Alu -1 119 27 2 1245 306 300 11 11 chr12 86598583 86598674 -34658856 + L2a LINE L2 3330 3420 -6 2 1245 936 235 40 0 chr12 86598731 86598931 -34658599 - B3 SINE B2 -4 212 5 2 1245 922 268 31 41 chr12 86599024 86599316 -34658214 + B4 SINE B4 1 289 -3 2 1245 703 288 52 44 chr12 86599354 86599626 -34657904 + B4A SINE B4 1 274 -18 2 1245 378 0 0 0 chr12 86599631 86599673 -34657857 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1245 332 199 83 43 chr12 86599803 86599908 -34657622 + B1F1 SINE Alu 1 120 0 2 1245 210 105 0 0 chr12 86600014 86600052 -34657478 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1245 28 79 0 0 chr12 86600591 86600654 -34656876 + AT_rich Low_complexity Low_complexity 1 63 0 2 1245 509 125 0 36 chr12 86600820 86600903 -34656627 + B1_Mus2 SINE Alu 68 147 0 2 1245 26 30 0 0 chr12 86600903 86600936 -34656594 + AT_rich Low_complexity Low_complexity 1 33 0 2 1245 1424 187 184 133 chr12 86600991 86601431 -34656099 + MT2A LTR ERVL 3 471 -62 2 1245 261 0 0 0 chr12 86601431 86601460 -34656070 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1245 1424 187 184 133 chr12 86601460 86601524 -34656006 + MT2A LTR ERVL 472 533 0 2 1245 659 151 112 1 chr12 86601574 86601704 -34655826 + B1_Mus2 SINE Alu 1 149 0 2 1245 273 275 24 36 chr12 86601946 86602029 -34655501 + ID4 SINE ID 1 82 -1 2 1245 809 196 0 14 chr12 86602828 86602968 -34654562 - B1_Mur1 SINE Alu -7 142 5 2 1245 1139 166 40 5 chr12 86603055 86603255 -34654275 + B3 SINE B2 5 211 -5 2 1245 272 312 39 65 chr12 86604006 86604160 -34653370 + MER20 DNA MER1_type 3 152 -67 2 1245 1033 200 24 5 chr12 86604502 86604708 -34652822 + B3 SINE B2 1 210 -6 2 1245 1552 52 16 0 chr12 86604940 86605132 -34652398 + B2_Mm2 SINE B2 1 195 0 2 1245 283 176 0 19 chr12 86605210 86605262 -34652268 - ID_B1 SINE B4 -67 157 107 2 1245 480 256 69 8 chr12 86606819 86606949 -34650581 + B1F2 SINE Alu 1 138 -11 2 1245 190 293 69 29 chr12 86611747 86611849 -34645681 + L2a LINE L2 3256 3361 -65 2 1245 1145 76 7 0 chr12 86611903 86612048 -34645482 - B1_Mus1 SINE Alu -1 147 2 2 1245 720 161 57 28 chr12 86612126 86612267 -34645263 - B1_Mur3 SINE Alu 0 149 5 2 1245 234 191 0 0 chr12 86612327 86612374 -34645156 + CT-rich Low_complexity Low_complexity 2 48 0 2 1245 800 195 172 0 chr12 86612506 86612680 -34644850 - B3 SINE B2 -8 208 5 2 1245 311 235 8 162 chr12 86612801 86612918 -34644612 - MLT1B LTR MaLR -4 386 288 2 1245 547 207 20 35 chr12 86614104 86614241 -34643289 - B1_Mur1 SINE Alu 0 149 13 2 1245 236 295 12 93 chr12 86614280 86614366 -34643164 - ID4_ SINE ID -3 80 2 2 1245 266 346 149 12 chr12 86614413 86614574 -34642956 - L3b LINE CR1 -26 456 274 2 1245 1937 101 61 0 chr12 86615118 86615407 -34642123 + ORR1B1 LTR MaLR 47 353 -41 2 1245 696 75 0 0 chr12 86615407 86615500 -34642030 + B1_Mus1 SINE Alu 2 94 -54 2 1245 681 13 0 0 chr12 86615500 86615578 -34641952 + (GAAA)n Simple_repeat Simple_repeat 1 78 0 2 1245 303 273 26 52 chr12 86615578 86615600 -34641930 + 7SLRNA srpRNA srpRNA 93 113 -201 2 1245 288 139 0 0 chr12 86615600 86615621 -34641909 + ORR1A3 LTR MaLR 276 318 -8 2 1245 563 252 49 24 chr12 86615645 86615808 -34641722 - B3A SINE B2 -27 171 1 2 1245 540 250 116 8 chr12 86615869 86615998 -34641532 - RSINE1 SINE B4 -15 150 8 2 1245 868 173 225 0 chr12 86616232 86616405 -34641125 + B3 SINE B2 1 212 -4 2 1245 414 295 9 0 chr12 86617491 86617603 -34639927 + RMER15 LTR ERVL 450 562 -13 2 1245 846 171 40 0 chr12 86617692 86617844 -34639686 + RSINE1 SINE B4 4 161 -4 2 1245 210 266 0 0 chr12 86617881 86617960 -34639570 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1245 256 320 65 46 chr12 86617975 86618083 -34639447 - PB1D10 SINE Alu -2 115 6 2 1245 216 0 0 0 chr12 86618653 86618677 -34638853 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1245 322 255 123 38 chr12 86618742 86618848 -34638682 + PB1D10 SINE Alu 3 117 0 2 1245 248 280 79 10 chr12 86618848 86618949 -34638581 + L1M4 LINE L1 5157 5264 -882 2 1245 599 236 56 28 chr12 86618952 86619131 -34638399 + B3A SINE B2 1 184 -14 2 1245 325 229 45 54 chr12 86619181 86619223 -34638307 + PB1D9 SINE Alu 2 42 -78 2 1245 204 40 0 0 chr12 86619223 86619248 -34638282 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 2 1245 325 229 45 54 chr12 86619248 86619316 -34638214 + PB1D9 SINE Alu 43 111 -9 2 1245 309 200 157 36 chr12 86619353 86619519 -34638011 + L1M4 LINE L1 5257 5442 -732 2 1245 378 242 37 92 chr12 86619532 86619558 -34637972 + L1MB3 LINE L1 5803 5828 -355 2 1245 1291 119 0 20 chr12 86619558 86619756 -34637774 + B2_Mm2 SINE B2 1 194 -1 2 1245 378 242 37 92 chr12 86619756 86619893 -34637637 + L1MB3 LINE L1 5829 5957 -226 2 1245 571 184 123 0 chr12 86619894 86620008 -34637522 + RSINE1 SINE B4 6 133 -32 2 1245 301 264 65 114 chr12 86620035 86620256 -34637274 + L1MB3 LINE L1 5973 6183 0 2 1245 264 238 12 12 chr12 86620316 86620397 -34637133 - L1MD LINE L1 -3309 2837 2757 2 1245 270 0 0 0 chr12 86620633 86620663 -34636867 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1245 324 0 0 0 chr12 86621867 86621903 -34635627 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1245 185 274 63 16 chr12 86622848 86622911 -34634619 + MER5B DNA MER1_type 1 66 -112 2 1245 1403 30 0 0 chr12 86622929 86623093 -34634437 + MERVL-int LTR ERVL 5208 5371 -114 2 1245 356 139 26 53 chr12 86623093 86623169 -34634361 + ORR1A3-int LTR MaLR 567 640 -1323 2 1245 299 26 0 0 chr12 86623169 86623207 -34634323 + MERVL-int LTR ERVL 5448 5485 0 2 1245 2418 28 0 3 chr12 86623207 86623496 -34634034 + MT2_Mm LTR ERVL 1 288 -205 2 1245 13656 27 1 0 chr12 86623505 86625045 -34632485 + MERVL-int LTR ERVL 3830 5371 -114 2 1245 355 139 26 53 chr12 86625045 86625121 -34632409 + ORR1A3-int LTR MaLR 567 640 -1323 2 1245 319 0 0 0 chr12 86625121 86625159 -34632371 + MERVL-int LTR ERVL 5448 5485 0 2 1245 528 130 31 42 chr12 86625159 86625255 -34632275 + MT2B2 LTR ERVL 1 95 -489 2 1245 2363 180 43 16 chr12 86625382 86625895 -34631635 + RLTR11A2 LTR ERVK 1 527 0 2 1245 277 178 64 4 chr12 86625896 86625974 -34631556 + L1MA9 LINE L1 6193 6270 -42 2 1245 614 299 67 94 chr12 86626028 86626242 -34631288 - B4 SINE B4 -1 291 86 2 1245 1197 56 0 0 chr12 86626242 86626384 -34631146 - B1_Mm SINE Alu -5 142 1 2 1245 614 299 67 94 chr12 86626384 86626468 -34631062 - B4 SINE B4 -207 85 1 2 1245 337 291 35 0 chr12 86626491 86626577 -34630953 - U6 snRNA snRNA -11 96 8 2 1245 472 30 15 15 chr12 86626644 86626711 -34630819 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1245 227 339 0 0 chr12 86626724 86626780 -34630750 - ID4_ SINE ID -14 69 14 2 1245 1304 81 6 0 chr12 86626775 86626947 -34630583 - B2_Mm2 SINE B2 -22 173 1 2 1245 333 0 0 0 chr12 86627702 86627739 -34629791 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1245 509 271 24 11 chr12 86627809 86627937 -34629593 + B1F2 SINE Alu 1 119 -1 2 1245 222 191 0 0 chr12 86627969 86628016 -34629514 + GA-rich Low_complexity Low_complexity 3 49 0 2 1245 371 286 31 0 chr12 86628044 86628142 -34629388 + B3A SINE B2 80 180 -18 2 1245 282 116 0 0 chr12 86628154 86628197 -34629333 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1245 237 227 86 76 chr12 86628248 86628353 -34629177 + PB1 SINE Alu 19 124 -3 2 1245 300 153 0 34 chr12 86629426 86629514 -34628016 + CT-rich Low_complexity Low_complexity 2 86 0 2 1245 235 345 0 35 chr12 86630273 86630360 -34627170 + L2b LINE L2 3289 3372 -3 2 1245 206 156 22 0 chr12 86632964 86633009 -34624521 + C-rich Low_complexity Low_complexity 3 48 0 2 1245 766 152 0 0 chr12 86633013 86633125 -34624405 - B1_Mur1 SINE Alu -37 112 1 3 1245 959 168 25 35 chr12 86633982 86634179 -34623351 - B2_Mm2 SINE B2 0 195 1 3 1245 362 329 51 38 chr12 86634216 86634374 -34623156 - RSINE1 SINE B4 -4 161 2 3 1245 228 195 0 0 chr12 86634495 86634536 -34622994 - HAL1 LINE L1 -147 2360 2320 3 1245 1090 130 22 28 chr12 86634852 86635034 -34622496 - B2_Mm2 SINE B2 -14 181 1 3 1245 386 157 29 0 chr12 86635406 86635476 -34622054 - PB1D9 SINE Alu -8 112 41 3 1245 258 241 99 27 chr12 86635573 86635684 -34621846 - HAL1 LINE L1 -945 1562 1444 3 1245 592 302 165 13 chr12 86635737 86636052 -34621478 - HAL1 LINE L1 -1156 1351 989 3 1245 1009 178 108 0 chr12 86636056 86636241 -34621289 - B3 SINE B2 -3 213 9 3 1245 664 176 0 16 chr12 86636392 86636513 -34621017 - PB1D9 SINE Alu -1 119 1 3 1245 472 227 221 29 chr12 86636828 86636964 -34620566 + B3A SINE B2 1 162 -36 3 1245 396 0 0 0 chr12 86636966 86637010 -34620520 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1246 1019 191 42 0 chr12 86638691 86638880 -34618650 - B3 SINE B2 -19 197 1 3 1246 585 228 20 46 chr12 86643099 86643251 -34614279 + B1_Mur1 SINE Alu 2 149 0 3 1246 198 0 0 0 chr12 86643256 86643278 -34614252 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 3 1246 392 271 24 59 chr12 86643597 86643751 -34613779 - RSINE1 SINE B4 -11 154 3 3 1246 373 266 13 0 chr12 86643792 86643871 -34613659 + ID4 SINE ID 2 81 -2 3 1246 795 147 28 14 chr12 86643905 86644050 -34613480 + B1_Mur4 SINE Alu 4 150 0 3 1246 240 35 0 0 chr12 86644064 86644093 -34613437 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1246 1213 48 7 0 chr12 86644855 86645000 -34612530 - B1_Mus2 SINE Alu 0 147 2 3 1246 854 159 28 0 chr12 86645279 86645424 -34612106 + B1_Mur3 SINE Alu 1 149 0 3 1246 503 247 155 21 chr12 86646027 86646221 -34611309 + ID_B1 SINE B4 5 224 0 3 1246 563 184 0 20 chr12 86646851 86646951 -34610579 + PB1D9 SINE Alu 20 117 -3 3 1246 225 132 0 0 chr12 86647247 86647285 -34610245 + (CCA)n Simple_repeat Simple_repeat 1 38 0 3 1246 1042 221 15 5 chr12 86647514 86647719 -34609811 - B3 SINE B2 -9 207 1 3 1246 388 329 100 0 chr12 86647750 86647890 -34609640 - RSINE1 SINE B4 -8 157 4 3 1246 545 0 15 0 chr12 86647908 86647973 -34609557 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1246 966 149 0 13 chr12 86647977 86648127 -34609403 - B1_Mus1 SINE Alu 0 148 1 3 1246 395 231 173 47 chr12 86648133 86648260 -34609270 - ID_B1 SINE B4 -1 223 81 3 1246 505 155 36 0 chr12 86648561 86648645 -34608885 - PB1D9 SINE Alu -1 119 33 3 1246 277 355 40 0 chr12 86649124 86649248 -34608282 - MER5B DNA MER1_type -6 172 44 3 1246 370 316 35 17 chr12 86649441 86649557 -34607973 + ID_B1 SINE B4 81 198 -26 3 1246 264 59 0 0 chr12 86650096 86650130 -34607400 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 3 1246 224 276 73 16 chr12 86650606 86650732 -34606798 - L2 LINE L2 -631 2788 2585 3 1246 794 138 19 82 chr12 86651742 86651900 -34605630 + B1_Mur3 SINE Alu 2 149 0 3 1246 643 245 46 41 chr12 86651909 86652105 -34605425 - B3A SINE B2 0 198 2 3 1246 965 178 168 0 chr12 86652881 86653066 -34604464 + B3 SINE B2 1 216 0 3 1246 537 261 8 34 chr12 86653226 86653345 -34604185 - PB1D10 SINE Alu 0 117 2 3 1246 507 174 34 17 chr12 86653481 86653598 -34603932 - L1ME3 LINE L1 -190 5972 5854 3 1246 1388 33 83 0 chr12 86653608 86653788 -34603742 - B2_Mm2 SINE B2 0 195 1 3 1246 232 303 109 33 chr12 86654831 86654923 -34602607 - MamRep137 DNA TcMar? -340 104 6 3 1246 443 287 68 24 chr12 86655716 86655923 -34601607 + B3 SINE B2 1 216 0 3 1246 1208 35 0 0 chr12 86655930 86656071 -34601459 + B1_Mus1 SINE Alu 1 141 -7 3 1246 600 14 0 0 chr12 86656075 86656144 -34601386 + (GAAAA)n Simple_repeat Simple_repeat 2 70 0 3 1246 377 212 146 39 chr12 86656819 86656922 -34600608 - B1_Mur2 SINE Alu -7 142 29 3 1246 1496 199 176 6 chr12 86657118 86657476 -34600054 - MTD LTR MaLR 0 419 1 3 1246 7993 149 82 93 chr12 86657660 86658748 -34598782 - RLTR22_Mur LTR ERVK -4 1844 647 3 1246 1158 74 0 0 chr12 86658748 86658896 -34598634 + B1_Mus1 SINE Alu 1 148 0 3 1246 7993 149 82 93 chr12 86658896 86659019 -34598511 - RLTR22_Mur LTR ERVK -1202 646 578 3 1246 1289 73 96 0 chr12 86659019 86659196 -34598334 - B2_Mm2 SINE B2 0 195 2 3 1246 7993 149 82 93 chr12 86659196 86659217 -34598313 - RLTR22_Mur LTR ERVK -1271 577 577 3 1246 1117 88 7 0 chr12 86659217 86659364 -34598166 - B1_Mus1 SINE Alu 0 148 1 3 1246 7993 149 82 93 chr12 86659364 86659689 -34597841 - RLTR22_Mur LTR ERVK -1271 577 312 3 1246 1364 69 40 0 chr12 86659689 86659862 -34597668 - B2_Mm2 SINE B2 -14 181 2 3 1246 7993 149 82 93 chr12 86659862 86660165 -34597365 - RLTR22_Mur LTR ERVK -1537 311 1 3 1246 201 74 0 0 chr12 86660386 86660413 -34597117 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1246 3000 69 20 2 chr12 86660454 86660847 -34596683 + MTB LTR MaLR 1 400 0 3 1246 225 245 19 19 chr12 86661204 86661258 -34596272 + B1F2 SINE Alu 10 63 -86 3 1246 184 276 78 48 chr12 86661470 86661573 -34595957 - L2c LINE L2 0 3387 3282 3 1246 252 264 120 40 chr12 86661909 86661984 -34595546 + ID4 SINE ID 3 83 0 3 1246 1222 90 34 0 chr12 86662020 86662198 -34595332 - B2_Mm1a SINE B2 0 193 10 3 1246 223 211 77 90 chr12 86662128 86662206 -34595324 - ID2 SINE ID -6 77 1 3 1246 759 225 135 0 chr12 86662452 86662630 -34594900 + B3 SINE B2 1 202 -14 3 1246 507 284 81 16 chr12 86662669 86662855 -34594675 + B3A SINE B2 1 198 0 3 1246 211 337 53 21 chr12 86663305 86663493 -34594037 + L2 LINE L2 2406 2599 -820 3 1246 212 310 0 17 chr12 86663495 86663534 -34593996 + polypyrimidine Low_complexity Low_complexity 20 58 0 3 1246 1194 68 0 0 chr12 86663534 86663681 -34593849 - B1_Mus1 SINE Alu 0 148 2 3 1246 212 310 0 17 chr12 86663681 86663700 -34593830 + polypyrimidine Low_complexity Low_complexity 1 19 0 3 1246 359 318 12 0 chr12 86663777 86663862 -34593668 - PB1D10 SINE Alu -27 90 5 3 1246 231 36 0 0 chr12 86664120 86664148 -34593382 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1246 355 236 168 4 chr12 86664148 86664281 -34593249 - B3A SINE B2 -53 163 2 3 1246 24 53 0 0 chr12 86664583 86664621 -34592909 + AT_rich Low_complexity Low_complexity 1 38 0 3 1246 21 0 0 0 chr12 86664656 86664677 -34592853 + AT_rich Low_complexity Low_complexity 1 21 0 3 1246 603 238 53 18 chr12 86664799 86664970 -34592560 + Lx8 LINE L1 6968 7144 -329 3 1246 324 230 243 7 chr12 86664968 86665108 -34592422 + Lx8 LINE L1 7297 7469 -4 3 1246 917 219 45 5 chr12 86665144 86665346 -34592184 + B3 SINE B2 2 211 -5 3 1246 486 267 178 27 chr12 86665456 86665876 -34591654 + L1M2 LINE L1 5043 5559 -741 3 1246 257 280 85 85 chr12 86665876 86665900 -34591630 + MT2B2 LTR ERVL 123 251 -333 3 1246 362 330 0 19 chr12 86665900 86666005 -34591525 + ID_B1 SINE B4 74 176 -48 3 1246 574 229 0 9 chr12 86665922 86666028 -34591502 + PB1D10 SINE Alu 13 117 0 3 1246 59 27 0 0 chr12 86666394 86666467 -34591063 + AT_rich Low_complexity Low_complexity 1 73 0 3 1246 270 299 107 40 chr12 86666467 86666617 -34590913 + Lx9 LINE L1 7139 7298 -346 3 1246 440 265 179 0 chr12 86666653 86666770 -34590760 + B1_Mur1 SINE Alu 7 144 -5 3 1246 249 318 98 76 chr12 86666894 86667078 -34590452 - MER5A DNA MER1_type 0 189 2 3 1246 1276 118 11 0 chr12 86667105 86667291 -34590239 + B2_Mm1t SINE B2 2 189 -4 3 1246 323 200 200 0 chr12 86667292 86667372 -34590158 + B3 SINE B2 35 130 -86 3 1246 24 32 0 0 chr12 86667446 86667477 -34590053 + AT_rich Low_complexity Low_complexity 1 31 0 3 1246 363 310 0 41 chr12 86667515 86667613 -34589917 + PB1D7 SINE Alu 5 98 -22 3 1246 1671 21 5 0 chr12 86667613 86667803 -34589727 - B2_Mm1a SINE B2 -1 192 2 3 1246 363 310 0 41 chr12 86667803 86667825 -34589705 + PB1D7 SINE Alu 99 120 0 3 1246 258 56 0 0 chr12 86667843 86667879 -34589651 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1246 926 171 182 0 chr12 86667954 86668121 -34589409 + B3 SINE B2 4 202 -14 3 1246 414 0 0 0 chr12 86668121 86668167 -34589363 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1246 1145 202 0 5 chr12 86668502 86668711 -34588819 + B3 SINE B2 2 209 -7 3 1246 354 211 45 55 chr12 86668993 86669103 -34588427 + ID_B1 SINE B4 114 222 -2 3 1246 214 317 24 0 chr12 86669302 86669384 -34588146 - MIRc SINE MIR -107 161 78 3 1246 241 169 0 53 chr12 86669385 86669430 -34588100 + A-rich Low_complexity Low_complexity 2 44 0 3 1246 842 143 57 0 chr12 86669430 86669570 -34587960 + B1_Mus1 SINE Alu 1 148 0 3 1246 241 169 0 53 chr12 86669570 86669599 -34587931 + A-rich Low_complexity Low_complexity 45 71 0 3 1246 546 211 25 44 chr12 86669894 86670053 -34587477 + MER5A1 DNA MER1_type 5 160 -6 3 1246 1567 112 9 0 chr12 86670278 86670502 -34587028 - URR1A DNA MER1_type 0 226 1 3 1246 240 35 0 0 chr12 86670651 86670680 -34586850 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 3 1246 1520 201 211 77 chr12 86671290 86671760 -34585770 + MT2A LTR ERVL 1 533 0 3 1246 495 267 67 0 chr12 86671784 86671934 -34585596 + B3A SINE B2 1 160 -38 3 1246 204 111 0 0 chr12 86671954 86671990 -34585540 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1246 621 248 8 15 chr12 86672133 86672264 -34585266 + B3 SINE B2 2 131 -85 3 1246 268 296 10 58 chr12 86672340 86672444 -34585086 + ID_B1 SINE B4 87 185 -39 3 1246 258 325 8 73 chr12 86672444 86672463 -34585067 + PB1D7 SINE Alu 6 120 0 4 1246 323 250 109 10 chr12 86672495 86672596 -34584934 + PB1D10 SINE Alu 1 111 -6 4 1246 215 276 92 0 chr12 86673042 86673129 -34584401 + RSINE1 SINE B4 38 132 -33 4 1246 489 218 278 14 chr12 86673241 86673385 -34584145 + B3A SINE B2 1 182 -16 4 1246 1414 80 27 0 chr12 86674139 86674326 -34583204 - B2_Mm1t SINE B2 0 193 2 4 1246 199 71 48 0 chr12 86675060 86675102 -34582428 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1246 409 66 11 0 chr12 86676049 86676119 -34581411 + B1_Mus2 SINE Alu 47 147 0 4 1246 180 0 0 0 chr12 86676119 86676139 -34581391 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1246 374 196 64 8 chr12 86676151 86676267 -34581263 + B3 SINE B2 69 198 0 4 1246 219 119 48 0 chr12 86676596 86676638 -34580892 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 4 1246 396 233 33 0 chr12 86676891 86676981 -34580549 + B1F SINE Alu 1 93 -56 4 1246 256 390 32 0 chr12 86676981 86677012 -34580518 + ID_B1 SINE B4 82 206 -18 4 1246 442 311 29 78 chr12 86677636 86677842 -34579688 + B3A SINE B2 3 198 0 4 1246 461 267 49 10 chr12 86677879 86677981 -34579549 + RSINE1 SINE B4 3 108 -57 4 1246 273 250 83 0 chr12 86678955 86679027 -34578503 + ID4_ SINE ID 4 81 -2 4 1246 188 0 0 69 chr12 86679441 86679470 -34578060 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1246 21 36 0 0 chr12 86680035 86680063 -34577467 + GC_rich Low_complexity Low_complexity 1 28 0 4 1246 261 0 0 0 chr12 86680618 86680647 -34576883 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1246 608 97 11 0 chr12 86680724 86680817 -34576713 + (TCC)n Simple_repeat Simple_repeat 3 96 0 4 1246 246 105 0 0 chr12 86680887 86680925 -34576605 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1246 197 273 45 15 chr12 86681000 86681067 -34576463 - MIR SINE MIR -164 98 30 4 1246 432 0 0 0 chr12 86681226 86681274 -34576256 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1246 272 281 15 15 chr12 86681276 86681341 -34576189 - RSINE1 SINE B4 -98 67 3 4 1246 916 246 130 35 chr12 86682990 86683360 -34574170 + L1MD2 LINE L1 5282 5686 -556 4 1246 570 236 121 21 chr12 86683447 86683728 -34573802 + L1MD2 LINE L1 5839 6147 -212 4 1246 180 77 0 0 chr12 86684116 86684142 -34573388 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4 1246 544 189 21 0 chr12 86684654 86684749 -34572781 + PB1D10 SINE Alu 5 101 -16 4 1246 296 310 124 0 chr12 86684749 86684761 -34572769 + B4 SINE B4 117 209 -83 4 1246 286 242 0 16 chr12 86684797 86684876 -34572654 + ID4 SINE ID 2 75 -77 4 1246 252 266 108 0 chr12 86685652 86685746 -34571784 + B1F2 SINE Alu 9 117 -32 4 1246 389 268 26 115 chr12 86685746 86685902 -34571628 + B4A SINE B4 3 144 -148 4 1246 816 190 35 0 chr12 86686417 86686559 -34570971 + B1_Mur2 SINE Alu 1 147 -2 4 1246 288 0 0 0 chr12 86686814 86686846 -34570684 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1246 24 0 0 0 chr12 86686855 86686879 -34570651 + AT_rich Low_complexity Low_complexity 1 24 0 4 1246 313 295 10 31 chr12 86686887 86686985 -34570545 + ID_B1 SINE B4 112 207 -17 4 1246 234 0 0 0 chr12 86686992 86687018 -34570512 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 4 1246 224 250 0 0 chr12 86687264 86687312 -34570218 + ID4 SINE ID 31 78 -5 4 1246 267 31 0 0 chr12 86688434 86688466 -34569064 + (TCCTG)n Simple_repeat Simple_repeat 4 35 0 4 1246 431 273 28 35 chr12 86689078 86689222 -34568308 + B1F SINE Alu 1 143 -6 4 1246 1228 199 169 0 chr12 86689921 86690223 -34567307 + Lx8 LINE L1 6967 7319 -154 4 1246 1078 131 30 20 chr12 86690228 86690431 -34567099 + URR1B DNA MER1_type 21 225 0 4 1246 249 152 100 17 chr12 86690431 86690491 -34567039 + Lx8 LINE L1 7312 7376 -97 4 1246 234 0 0 0 chr12 86690527 86690553 -34566977 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1246 845 135 7 0 chr12 86690668 86690809 -34566721 + B1_Mur4 SINE Alu 3 144 -6 4 1246 399 134 0 0 chr12 86692904 86692986 -34564544 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 1246 440 289 181 0 chr12 86693019 86693168 -34564362 - B3 SINE B2 -40 176 1 4 1246 548 234 8 24 chr12 86693175 86693302 -34564228 - ID_B1 SINE B4 -6 218 94 4 1246 310 295 0 40 chr12 86693216 86693315 -34564215 - PB1D10 SINE Alu -22 95 1 4 1246 257 280 0 74 chr12 86693414 86693495 -34564035 + ID_B1 SINE B4 46 120 -104 4 1246 215 317 47 35 chr12 86693570 86693655 -34563875 + RSINE1 SINE B4 80 165 0 4 1246 189 0 0 0 chr12 86693746 86693767 -34563763 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1246 725 254 15 31 chr12 86693962 86694157 -34563373 + B3 SINE B2 7 198 0 4 1246 1114 224 67 2 chr12 86694194 86694551 -34562979 + MTD LTR MaLR 5 408 -11 4 1246 465 236 35 64 chr12 86694561 86694733 -34562797 + ID_B1 SINE B4 9 175 -49 4 1246 211 317 24 0 chr12 86694806 86694888 -34562642 + BC1_Mm scRNA scRNA 12 95 -57 4 1246 490 268 18 0 chr12 86694940 86695052 -34562478 - PB1D7 SINE Alu -6 114 1 4 1246 303 252 29 48 chr12 86695489 86695593 -34561937 - L1MC1 LINE L1 -241 6092 5991 4 1246 239 244 62 25 chr12 86695966 86696046 -34561484 + B3A SINE B2 100 182 -16 4 1246 233 306 0 0 chr12 86696046 86696118 -34561412 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1246 299 235 269 19 chr12 86696495 86696599 -34560931 - B1_Mur2 SINE Alu -7 142 13 4 1246 1218 106 84 0 chr12 86696622 86696801 -34560729 - B2_Mm2 SINE B2 0 195 2 4 1246 538 193 23 109 chr12 86697094 86697222 -34560308 - B1_Mur2 SINE Alu -1 119 3 4 1246 21 0 0 0 chr12 86697266 86697287 -34560243 + AT_rich Low_complexity Low_complexity 1 21 0 4 1246 759 132 155 0 chr12 86697293 86697422 -34560108 + B1_Mur3 SINE Alu 1 149 0 4 1246 230 143 0 20 chr12 86698067 86698117 -34559413 + GA-rich Low_complexity Low_complexity 2 50 0 4 1246 688 12 0 0 chr12 86698325 86698409 -34559121 - L1Md_A LINE L1 0 6582 6499 4 1246 1132 206 0 19 chr12 86698757 86698970 -34558560 - B3 SINE B2 -6 210 2 4 1246 210 163 47 0 chr12 86699363 86699406 -34558124 - B1_Mur2 SINE Alu -42 107 63 4 1246 1133 68 0 7 chr12 86699463 86699610 -34557920 - B1_Mm SINE Alu 0 147 2 4 1246 231 114 0 0 chr12 86699640 86699675 -34557855 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1246 351 0 0 0 chr12 86699695 86699734 -34557796 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1246 1611 121 84 4 chr12 86700003 86700277 -34557253 + ORR1B1 LTR MaLR 1 296 -98 4 1246 405 58 0 0 chr12 86700433 86700485 -34557045 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 4 1246 243 0 0 0 chr12 86700564 86700591 -34556939 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 1246 1240 44 0 0 chr12 86700591 86700750 -34556780 - B2_Mm1a SINE B2 -33 160 2 4 1246 229 167 79 48 chr12 86700754 86700817 -34556713 - L1M LINE L1 -739 5425 5361 4 1246 1009 217 5 16 chr12 86701391 86701613 -34555917 + B3 SINE B2 3 216 0 4 1246 23 0 0 0 chr12 86702025 86702048 -34555482 + AT_rich Low_complexity Low_complexity 1 23 0 4 1246 260 155 65 169 chr12 86702198 86702322 -34555208 - B1F SINE Alu -38 111 1 4 1246 1386 227 202 31 chr12 86703303 86703858 -34553672 + L1MC3 LINE L1 6742 7391 -394 4 1246 1003 195 40 25 chr12 86703876 86704076 -34553454 + B3 SINE B2 5 207 -9 4 1246 795 253 22 0 chr12 86704348 86704523 -34553007 + B3 SINE B2 4 182 -34 4 1246 698 183 41 21 chr12 86704523 86704668 -34552862 + B1_Mus1 SINE Alu 1 148 0 4 1246 392 273 43 50 chr12 86704755 86704894 -34552636 + ID_B1 SINE B4 86 223 -1 4 1246 201 360 27 0 chr12 86704948 86705023 -34552507 + MIR SINE MIR 46 122 -140 4 1246 1080 57 43 0 chr12 86705242 86705382 -34552148 + B1_Mus2 SINE Alu 2 147 0 4 1246 1043 220 86 0 chr12 86705521 86705766 -34551764 + MTD LTR MaLR 33 298 -121 4 1246 273 190 175 12 chr12 86705931 86706011 -34551519 + B1F SINE Alu 13 105 -44 4 1246 333 100 0 0 chr12 86706032 86706082 -34551448 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1246 201 69 100 33 chr12 86706090 86706150 -34551380 + (TTAA)n Simple_repeat Simple_repeat 4 67 0 4 1246 303 364 71 0 chr12 86706151 86706250 -34551280 + ID_B1 SINE B4 91 196 -28 4 1246 1186 68 0 0 chr12 86706434 86706582 -34550948 - B1_Mus1 SINE Alu 0 148 1 4 1246 406 231 224 59 chr12 86706605 86706775 -34550755 - B3A SINE B2 0 198 1 4 1246 220 27 26 26 chr12 86708569 86708607 -34548923 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 4 1246 1239 20 0 27 chr12 86708607 86708748 -34548782 - B1_Mus2 SINE Alu -7 140 2 4 1246 1024 108 0 39 chr12 86708827 86708981 -34548549 + B1_Mur4 SINE Alu 3 150 0 4 1246 192 48 71 0 chr12 86708990 86709032 -34548498 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 4 1246 743 127 67 0 chr12 86709091 86709225 -34548305 + B1_Mus1 SINE Alu 6 148 0 4 1246 435 150 38 0 chr12 86709490 86709570 -34547960 + ID_B1 SINE B4 85 167 -57 4 1246 225 313 158 20 chr12 86709631 86709732 -34547798 + PB1D10 SINE Alu 1 115 -2 4 1246 614 241 99 38 chr12 86709744 86709955 -34547575 + B4A SINE B4 1 224 -68 4 1246 227 154 19 19 chr12 86709978 86710031 -34547499 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 4 1246 874 188 14 0 chr12 86710400 86710544 -34546986 + B1_Mur4 SINE Alu 3 148 -2 5 1246 654 150 83 0 chr12 86710584 86710704 -34546826 + B3 SINE B2 1 130 -86 5 1246 30 27 0 0 chr12 86710714 86710751 -34546779 + AT_rich Low_complexity Low_complexity 1 37 0 5 1246 1194 35 14 0 chr12 86710906 86711050 -34546480 + B1_Mus2 SINE Alu 2 147 0 5 1246 669 165 17 0 chr12 86711222 86711337 -34546193 + B1_Mur2 SINE Alu 25 141 -8 5 1246 374 270 34 0 chr12 86711398 86711487 -34546043 + B3 SINE B2 90 181 -35 5 1246 685 142 0 0 chr12 86711489 86711595 -34545935 + B2_Mm2 SINE B2 2 107 -88 5 1246 216 0 0 0 chr12 86711656 86711680 -34545850 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1246 220 262 103 37 chr12 86712144 86712251 -34545279 - B3A SINE B2 -84 114 1 5 1246 369 310 74 40 chr12 86712320 86712468 -34545062 - RSINE1 SINE B4 -10 155 3 5 1246 231 273 236 11 chr12 86712617 86712706 -34544824 - PB1 SINE Alu -18 109 1 5 1246 252 268 5 0 chr12 86713093 86713160 -34544370 + B1F1 SINE Alu 4 72 -45 5 1246 759 85 169 0 chr12 86713898 86714016 -34543514 + B1_Mm SINE Alu 1 138 -9 5 1246 755 241 35 5 chr12 86714238 86714438 -34543092 + B3 SINE B2 11 216 0 5 1246 21 0 0 0 chr12 86715180 86715201 -34542329 + GC_rich Low_complexity Low_complexity 1 21 0 5 1246 21 36 0 0 chr12 86715360 86715388 -34542142 + GC_rich Low_complexity Low_complexity 1 28 0 5 1246 208 80 0 74 chr12 86716437 86716491 -34541039 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 5 1246 1074 94 0 0 chr12 86716532 86716670 -34540860 - B1_Mus1 SINE Alu -6 142 5 5 1246 877 121 57 0 chr12 86716676 86716817 -34540713 - B1_Mur4 SINE Alu -1 149 1 5 1246 257 100 0 0 chr12 86716992 86717032 -34540498 + B1_Mus2 SINE Alu 108 147 0 5 1246 233 301 9 97 chr12 86717168 86717180 -34540350 + MT2B LTR ERVL 154 155 -446 5 1246 636 216 8 0 chr12 86717180 86717305 -34540225 + B1_Mur2 SINE Alu 2 127 -22 5 1246 203 0 0 36 chr12 86717310 86717338 -34540192 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1246 513 209 0 0 chr12 86717415 86717520 -34540010 + B1F SINE Alu 17 121 -28 5 1246 251 292 60 34 chr12 86717416 86717533 -34539997 + B4 SINE B4 103 222 -70 5 1246 1364 77 43 5 chr12 86717926 86718110 -34539420 - B2_Mm2 SINE B2 -4 191 1 5 1246 207 0 0 0 chr12 86718229 86718252 -34539278 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1246 810 80 65 110 chr12 86718252 86718407 -34539123 - B1_Mus1 SINE Alu 0 148 1 5 1246 227 250 95 0 chr12 86718432 86718516 -34539014 - PB1D7 SINE Alu -1 119 28 5 1246 315 267 91 41 chr12 86718526 86718647 -34538883 - MIRc SINE MIR -42 226 100 5 1246 440 268 92 48 chr12 86718681 86718973 -34538557 - MER31A LTR ERV1 -31 454 33 5 1246 329 237 32 21 chr12 86719003 86719079 -34538451 + RSINE1 SINE B4 2 78 -87 5 1246 1303 91 0 22 chr12 86719079 86719258 -34538272 + B2_Mm2 SINE B2 2 176 -19 5 1246 329 237 32 21 chr12 86719258 86719276 -34538254 + RSINE1 SINE B4 79 96 -69 5 1246 29 0 0 0 chr12 86719297 86719326 -34538204 + AT_rich Low_complexity Low_complexity 1 29 0 5 1246 463 233 0 151 chr12 86719369 86719541 -34537989 + B1_Mur2 SINE Alu 4 149 0 5 1246 1243 48 0 0 chr12 86719590 86719737 -34537793 - B1_Mus2 SINE Alu 0 147 1 5 1246 197 222 58 58 chr12 86719831 86719917 -34537613 + L2a LINE L2 3270 3355 -71 5 1246 333 0 0 0 chr12 86720112 86720149 -34537381 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1246 434 243 93 0 chr12 86720151 86720258 -34537272 - PB1D10 SINE Alu 0 117 1 5 1246 267 31 0 0 chr12 86720369 86720401 -34537129 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1246 618 76 43 0 chr12 86720402 86720494 -34537036 - B1_Mus1 SINE Alu -13 135 40 5 1246 677 205 0 0 chr12 86720857 86720984 -34536546 + B1_Mur1 SINE Alu 2 128 -21 5 1246 432 283 171 26 chr12 86721354 86721659 -34535871 + L2 LINE L2 2280 2628 -791 5 1246 284 349 33 107 chr12 86721699 86721914 -34535616 + MER58C DNA MER1_type 1 199 -16 5 1246 985 211 10 20 chr12 86722035 86722233 -34535297 - B3 SINE B2 -20 196 1 5 1246 435 19 0 0 chr12 86722405 86722457 -34535073 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1246 222 91 0 0 chr12 86722457 86722489 -34535041 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1246 191 297 12 75 chr12 86722657 86722737 -34534793 + MIRb SINE MIR 187 261 -7 5 1246 295 384 10 0 chr12 86722751 86722850 -34534680 - MIRm SINE MIR -116 160 61 5 1246 327 333 0 0 chr12 86723115 86723196 -34534334 - ID2 SINE ID -1 82 2 5 1246 729 159 3 1 chr12 86723370 86723512 -34534018 - B1_Mus1 SINE Alu 0 149 5 5 1246 245 309 75 0 chr12 86723592 86723686 -34533844 + L1MA5 LINE L1 6190 6290 -10 5 1246 861 170 0 0 chr12 86723745 86723886 -34533644 - B1_Mus1 SINE Alu -7 141 1 5 1246 1200 68 0 0 chr12 86724659 86724805 -34532725 + B1_Mus2 SINE Alu 1 146 -1 5 1246 465 279 95 7 chr12 86724813 86724961 -34532569 - RSINE1 SINE B4 0 165 5 5 1246 416 224 18 61 chr12 86724970 86725084 -34532446 - PB1D10 SINE Alu 0 117 9 5 1246 224 246 16 47 chr12 86725028 86725092 -34532438 - B4A SINE B4 -147 145 84 5 1246 469 294 0 0 chr12 86725412 86725521 -34532009 + PB1D10 SINE Alu 1 109 -8 5 1246 612 217 33 42 chr12 86725529 86725649 -34531881 + RSINE1 SINE B4 1 119 -46 5 1246 501 92 0 0 chr12 86725649 86725725 -34531805 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1246 180 111 0 0 chr12 86725726 86725753 -34531777 + (CCA)n Simple_repeat Simple_repeat 1 27 0 5 1246 435 261 34 25 chr12 86725874 86725992 -34531538 + PB1D7 SINE Alu 2 120 0 5 1246 241 333 0 28 chr12 86726085 86726156 -34531374 + ID4_ SINE ID 9 77 -6 5 1246 319 325 25 41 chr12 86726200 86726322 -34531208 - MER5B DNA MER1_type -53 125 6 5 1246 355 219 227 10 chr12 86727136 86727233 -34530297 + ID_B1 SINE B4 81 198 -26 5 1246 279 213 0 16 chr12 86727178 86727240 -34530290 + B1F1 SINE Alu 67 127 -22 5 1246 209 245 0 20 chr12 86727247 86727268 -34530262 + A-rich Low_complexity Low_complexity 3 23 0 5 1246 1221 106 0 0 chr12 86727268 86727448 -34530082 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1246 209 245 0 20 chr12 86727448 86727476 -34530054 + A-rich Low_complexity Low_complexity 24 51 0 5 1246 244 288 25 0 chr12 86727671 86727751 -34529779 - MLT1C LTR MaLR 0 627 546 5 1246 394 335 92 30 chr12 86727793 86728057 -34529473 - MLT1C LTR MaLR -231 274 4 5 1246 392 298 8 50 chr12 86728287 86728407 -34529123 + RSINE1 SINE B4 45 159 -6 5 1246 344 145 0 24 chr12 86728407 86728492 -34529038 + (TCTCTG)n Simple_repeat Simple_repeat 3 85 0 5 1246 736 295 10 59 chr12 86728669 86728871 -34528659 - B3A SINE B2 -2 196 5 5 1246 723 228 70 70 chr12 86728930 86729171 -34528359 + MER2 DNA MER2_type 90 330 -15 5 1246 696 213 132 30 chr12 86729261 86729557 -34527973 + MTD LTR MaLR 2 406 -13 5 1246 195 311 142 8 chr12 86730318 86730438 -34527092 - L2b LINE L2 -4 3371 3236 5 1246 205 371 66 23 chr12 86730470 86730652 -34526878 + MIR SINE MIR 38 228 -40 5 1246 354 297 7 68 chr12 86731235 86731366 -34526164 + B1F1 SINE Alu 3 127 -22 5 1246 1141 74 0 13 chr12 86731366 86731516 -34526014 + B1_Mus1 SINE Alu 1 148 0 5 1246 354 297 7 68 chr12 86731516 86731532 -34525998 + B1F1 SINE Alu 128 141 -8 5 1246 303 28 0 0 chr12 86731849 86731885 -34525645 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1246 210 352 13 66 chr12 86731981 86732057 -34525473 + ID4_ SINE ID 3 74 -9 5 1246 184 410 0 37 chr12 86732224 86732333 -34525197 + MIRb SINE MIR 28 132 -136 5 1246 2036 215 142 32 chr12 86732391 86732566 -34524964 - Lx7 LINE L1 -498 7198 6984 5 1246 1577 41 0 25 chr12 86732566 86732764 -34524766 - B2_Mm1a SINE B2 0 193 1 5 1246 2036 215 142 32 chr12 86732764 86733117 -34524413 - Lx7 LINE L1 -713 6983 6612 5 1246 262 203 105 26 chr12 86733763 86733839 -34523691 + MLT1A1 LTR MaLR 7 88 -320 5 1246 709 250 38 32 chr12 86733836 86733860 -34523670 - B2_Mm2 SINE B2 -8 187 157 5 1246 2328 123 58 45 chr12 86733860 86734260 -34523270 - MTB_Mm LTR MaLR 0 407 3 5 1246 804 166 59 8 chr12 86734260 86734421 -34523109 - B3 SINE B2 -39 156 1 5 1246 342 0 0 0 chr12 86734451 86734489 -34523041 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1246 441 0 0 0 chr12 86734489 86734537 -34522993 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1246 347 314 10 0 chr12 86735046 86735148 -34522382 - PB1 SINE Alu -4 123 21 5 1246 193 316 122 37 chr12 86735911 86735993 -34521537 + MER5B DNA MER1_type 27 115 -63 5 1246 281 312 53 23 chr12 86735995 86736126 -34521404 - MIRb SINE MIR -109 159 25 5 1246 1427 43 20 51 chr12 86736220 86736416 -34521114 - B2_Mm2 SINE B2 -5 190 1 5 1246 902 135 38 0 chr12 86736419 86736552 -34520978 + B1_Mus1 SINE Alu 11 148 0 5 1246 810 171 17 0 chr12 86736560 86736736 -34520794 + GA-rich Low_complexity Low_complexity 2 180 0 5 1246 207 0 0 0 chr12 86736751 86736774 -34520756 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 5 1246 25 0 0 0 chr12 86736941 86736966 -34520564 + AT_rich Low_complexity Low_complexity 1 25 0 5 1246 423 250 0 12 chr12 86737155 86737240 -34520290 + ID_B1 SINE B4 88 171 -53 5 1246 404 265 28 47 chr12 86737240 86737262 -34520268 + PB1D10 SINE Alu 7 111 -6 5 1246 724 125 62 8 chr12 86737773 86737902 -34519628 - B1_Mus1 SINE Alu -2 146 11 5 1246 438 238 142 69 chr12 86737902 86737961 -34519569 - B4 SINE B4 -1 223 27 6 1246 525 209 6 115 chr12 86738025 86738182 -34519348 + ID_B1 SINE B4 78 217 -7 6 1246 640 183 0 67 chr12 86738052 86738187 -34519343 + B1F SINE Alu 22 147 -2 6 1246 260 372 80 0 chr12 86738435 86738548 -34518982 - PB1 SINE Alu -4 123 2 6 1246 429 276 138 100 chr12 86739339 86739629 -34517901 - MER113A DNA MER1_type -6 308 8 6 1246 300 301 129 82 chr12 86739669 86739948 -34517582 + B4 SINE B4 1 292 0 6 1246 466 198 6 6 chr12 86739948 86740126 -34517404 + CT-rich Low_complexity Low_complexity 2 179 0 6 1246 297 0 0 0 chr12 86740128 86740161 -34517369 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1246 538 168 186 0 chr12 86740414 86740527 -34517003 - B1_Mur1 SINE Alu -5 144 11 6 1246 421 234 11 0 chr12 86740558 86740651 -34516879 + B3 SINE B2 60 159 -39 6 1246 1069 293 24 31 chr12 86740827 86741116 -34516414 + B4A SINE B4 1 287 -5 6 1246 465 19 0 0 chr12 86741157 86741211 -34516319 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1246 396 0 0 0 chr12 86741651 86741695 -34515835 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1246 528 338 12 0 chr12 86741698 86741858 -34515672 - RSINE1 SINE B4 -1 164 3 6 1246 180 0 0 0 chr12 86741903 86741923 -34515607 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1246 516 56 0 0 chr12 86741923 86741994 -34515536 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1246 3048 18 0 0 chr12 86741995 86742332 -34515198 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1246 58030 18 7 4 chr12 86742332 86748790 -34508740 - IAPEz-int LTR ERVK 0 6481 8 6 1246 3048 18 0 0 chr12 86748790 86749127 -34508403 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1246 459 239 25 17 chr12 86749266 86749385 -34508145 - PB1D7 SINE Alu 0 120 1 6 1246 268 247 98 12 chr12 86749543 86749625 -34507905 - ORR1D1 LTR MaLR -2 372 284 6 1246 447 284 81 9 chr12 86749679 86749825 -34507705 + B4 SINE B4 94 241 -51 6 1246 356 294 44 35 chr12 86749816 86749929 -34507601 + RSINE1 SINE B4 52 165 0 6 1246 228 35 0 0 chr12 86750041 86750070 -34507460 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1246 1077 59 0 62 chr12 86750099 86750244 -34507286 + B1_Mus2 SINE Alu 2 137 -10 6 1246 436 313 32 26 chr12 86750349 86750503 -34507027 + ORR1E LTR MaLR 1 155 -204 6 1246 597 28 0 0 chr12 86750517 86750588 -34506942 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 1246 280 324 37 47 chr12 86750615 86750722 -34506808 + ORR1E LTR MaLR 256 361 -18 6 1246 245 200 20 0 chr12 86750835 86750885 -34506645 - ID4 SINE ID -9 74 24 6 1246 344 227 129 30 chr12 86750947 86751079 -34506451 - MER5A1 DNA MER1_type -20 146 2 6 1246 311 0 26 0 chr12 86751443 86751482 -34506048 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1246 731 123 8 0 chr12 86751574 86751696 -34505834 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 6 1246 264 277 23 35 chr12 86752045 86752131 -34505399 - MLT1A LTR MaLR -1 373 289 6 1246 1970 174 28 41 chr12 86752151 86752210 -34505320 + ORR1C2 LTR MaLR 1 55 -329 6 1246 627 239 205 80 chr12 86752210 86752537 -34504993 + RLTR9A LTR ERVK 1 368 0 6 1246 1970 174 28 41 chr12 86752537 86752866 -34504664 + ORR1C2 LTR MaLR 56 384 0 6 1246 1094 48 0 120 chr12 86753048 86753215 -34504315 + B1_Mus1 SINE Alu 2 148 0 6 1246 336 178 0 0 chr12 86753215 86753288 -34504242 + A-rich Low_complexity Low_complexity 1 73 0 6 1246 246 229 46 62 chr12 86753491 86753556 -34503974 + RSINE1 SINE B4 78 141 -24 6 1246 468 0 0 0 chr12 86753556 86753608 -34503922 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1246 1558 280 74 23 chr12 86753623 86754068 -34503462 + L1_Mur3 LINE L1 5093 5567 -313 6 1246 225 94 0 0 chr12 86754068 86754100 -34503430 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1246 1558 280 74 23 chr12 86754100 86754316 -34503214 + L1_Mur3 LINE L1 5568 5788 -92 6 1246 581 309 47 125 chr12 86754316 86754423 -34503107 + B4A SINE B4 2 80 -212 6 1246 601 216 241 18 chr12 86754423 86754593 -34502937 + B3 SINE B2 5 212 -4 6 1246 581 309 47 125 chr12 86754593 86754781 -34502749 + B4A SINE B4 81 274 -18 6 1246 189 0 0 0 chr12 86754794 86754815 -34502715 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1246 654 13 0 0 chr12 86754815 86754889 -34502641 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1246 217 153 32 48 chr12 86754985 86755047 -34502483 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 6 1246 732 219 7 0 chr12 86755321 86755457 -34502073 + B1_Mus2 SINE Alu 1 137 -10 6 1246 188 0 0 69 chr12 86755457 86755486 -34502044 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1246 345 282 117 0 chr12 86755622 86755725 -34501805 - PB1D7 SINE Alu -2 118 4 6 1246 212 322 89 16 chr12 86755725 86755769 -34501761 - B4A SINE B4 -199 93 41 6 1246 181 256 0 0 chr12 86755871 86755910 -34501620 + MIRm SINE MIR 235 273 -3 6 1246 295 251 99 13 chr12 86756323 86756442 -34501088 + MTE2b LTR MaLR 214 365 -14 6 1246 375 23 0 0 chr12 86756856 86756900 -34500630 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1246 266 366 84 44 chr12 86756979 86757228 -34500302 + MLT1K LTR MaLR 332 590 -5 6 1246 287 313 30 107 chr12 86757341 86757509 -34500021 + MLT1J2 LTR MaLR 27 182 -266 6 1246 434 234 9 70 chr12 86757510 86757625 -34499905 - PB1D10 SINE Alu 0 117 10 6 1246 237 232 100 14 chr12 86757679 86757749 -34499781 - ID4_ SINE ID -6 77 2 6 1246 418 335 35 50 chr12 86757799 86757997 -34499533 + ID_B1 SINE B4 17 211 -13 6 1246 450 0 0 0 chr12 86757997 86758047 -34499483 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 6 1246 895 141 0 7 chr12 86758150 86758286 -34499244 - B1_Mur3 SINE Alu 0 149 15 6 1246 635 303 12 24 chr12 86759246 86759478 -34498052 - MER102a DNA MER1_type -110 220 2 6 1246 292 270 55 83 chr12 86760068 86760125 -34497405 - MER81 DNA AcHobo -8 106 48 6 1246 1994 164 152 75 chr12 86760125 86760176 -34497354 - MT2A LTR ERVL 0 533 483 6 1246 189 0 0 0 chr12 86760176 86760197 -34497333 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 6 1246 600 53 0 0 chr12 86760202 86760278 -34497252 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 6 1246 1994 164 152 75 chr12 86760278 86760715 -34496815 - MT2A LTR ERVL -55 478 2 6 1246 292 270 55 83 chr12 86760715 86760766 -34496764 - MER81 DNA AcHobo -67 47 2 6 1246 231 275 43 0 chr12 86760840 86760909 -34496621 + ID4 SINE ID 3 74 -9 6 1246 366 216 14 0 chr12 86760974 86761048 -34496482 + ID_B1 SINE B4 95 169 -55 6 1246 288 0 0 0 chr12 86761059 86761091 -34496439 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1246 268 152 22 0 chr12 86761132 86761178 -34496352 + B1F SINE Alu 98 144 -5 6 1246 710 186 25 0 chr12 86761192 86761310 -34496220 + RSINE1 SINE B4 5 125 -40 6 1246 24 0 0 0 chr12 86761335 86761359 -34496171 + AT_rich Low_complexity Low_complexity 1 24 0 6 1246 504 48 0 0 chr12 86761466 86761529 -34496001 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1246 270 208 0 234 chr12 86761533 86761627 -34495903 - ID4_ SINE ID -9 74 3 6 1246 727 192 12 0 chr12 86761656 86761823 -34495707 + CT-rich Low_complexity Low_complexity 2 170 0 6 1246 186 315 13 27 chr12 86762138 86762213 -34495317 + L2b LINE L2 3297 3370 -5 6 1246 444 242 78 31 chr12 86762290 86762418 -34495112 + ID_B1 SINE B4 1 134 -90 6 1246 252 218 7 49 chr12 86762577 86762608 -34494922 - MTEb LTR MaLR -303 76 1 6 1246 260 196 0 0 chr12 86762608 86762654 -34494876 - MLT2B5 LTR ERVL -671 46 1 6 1246 477 207 100 9 chr12 86762654 86762797 -34494733 - ERVL-B4-int LTR ERVL 0 5757 5595 6 1246 729 108 317 21 chr12 86762972 86763114 -34494416 - B2_Mm2 SINE B2 -10 185 2 6 1246 742 230 0 7 chr12 86763114 86763254 -34494276 + B1F SINE Alu 3 141 -8 6 1246 480 259 75 20 chr12 86763310 86763456 -34494074 + MER2 DNA MER2_type 192 345 0 6 1246 708 221 21 7 chr12 86763713 86763854 -34493676 - RSINE1 SINE B4 -21 144 2 6 1246 329 285 19 68 chr12 86763884 86763955 -34493575 - ID_B1 SINE B4 -1 223 162 6 1246 1048 203 24 14 chr12 86763955 86764165 -34493365 - B3 SINE B2 -2 214 3 6 1246 329 285 19 68 chr12 86764165 86764255 -34493275 - ID_B1 SINE B4 -63 161 71 6 1246 260 304 64 70 chr12 86764463 86764619 -34492911 - MER20 DNA MER1_type -54 165 11 6 1246 252 143 0 0 chr12 86764656 86764698 -34492832 + (CAT)n Simple_repeat Simple_repeat 2 43 0 6 1246 219 146 0 0 chr12 86765361 86765402 -34492128 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 6 1246 376 170 162 48 chr12 86765419 86765524 -34492006 + PB1D10 SINE Alu 1 117 0 6 1246 23 0 0 0 chr12 86765703 86765726 -34491804 + AT_rich Low_complexity Low_complexity 1 23 0 6 1246 249 159 0 0 chr12 86765776 86765820 -34491710 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1246 539 307 89 46 chr12 86765825 86766105 -34491425 - B4A SINE B4 0 292 1 6 1246 439 256 107 8 chr12 86766227 86766349 -34491181 - B1F SINE Alu -5 144 11 6 1246 272 344 157 36 chr12 86766803 86767026 -34490504 + L2 LINE L2 2698 2947 -472 6 1246 504 156 0 0 chr12 86767028 86767118 -34490412 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 1246 732 264 11 68 chr12 86767690 86767881 -34489649 + ID_B1 SINE B4 45 224 0 6 1246 486 49 0 0 chr12 86767890 86767951 -34489579 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 6 1246 36 0 0 0 chr12 86768052 86768088 -34489442 + AT_rich Low_complexity Low_complexity 1 36 0 6 1246 245 330 61 41 chr12 86768137 86768235 -34489295 - L2c LINE L2 -13 3374 3275 6 1246 825 40 0 0 chr12 86768388 86768489 -34489041 + (CAAAG)n Simple_repeat Simple_repeat 2 102 0 6 1246 648 169 98 15 chr12 86768646 86768778 -34488752 + B1_Mus1 SINE Alu 5 147 -1 6 1246 180 297 163 60 chr12 86768893 86769126 -34488404 - L2c LINE L2 -346 3073 2817 6 1246 232 178 22 0 chr12 86769396 86769441 -34488089 + CT-rich Low_complexity Low_complexity 4 49 0 6 1246 220 362 12 0 chr12 86769446 86769526 -34488004 - ID4_ SINE ID 0 83 3 6 1247 302 254 142 0 chr12 86769682 86769816 -34487714 + LTR50 LTR ERVL 598 750 -45 6 1247 403 253 105 0 chr12 86769827 86769922 -34487608 + B1F1 SINE Alu 2 106 -43 7 1247 599 0 14 0 chr12 86769922 86769993 -34487537 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 7 1247 216 280 26 78 chr12 86770277 86770393 -34487137 - L2 LINE L2 -490 2929 2820 7 1247 191 357 26 9 chr12 86770534 86770647 -34486883 - L2 LINE L2 -999 2420 2306 7 1247 202 250 0 62 chr12 86770625 86770689 -34486841 - MIR SINE MIR -101 107 48 7 1247 211 229 0 0 chr12 86770897 86770945 -34486585 + A-rich Low_complexity Low_complexity 1 48 0 7 1247 217 270 87 33 chr12 86771901 86771993 -34485537 - MIRc SINE MIR -47 221 118 7 1247 685 246 119 11 chr12 86772139 86772324 -34485206 - ID_B1 SINE B4 -19 205 1 7 1247 294 274 40 40 chr12 86772905 86773004 -34484526 + PB1D10 SINE Alu 2 100 -17 7 1247 501 278 127 33 chr12 86773419 86773631 -34483899 - MLT1E1A LTR MaLR -4 650 419 7 1247 246 62 0 0 chr12 86773656 86773688 -34483842 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 7 1247 509 277 45 57 chr12 86773703 86773860 -34483670 - ID_B1 SINE B4 0 224 70 7 1247 276 256 33 44 chr12 86773875 86773965 -34483565 - PB1D7 SINE Alu 0 120 32 7 1247 738 253 167 14 chr12 86773977 86774333 -34483197 - MLT1E1A LTR MaLR -250 430 8 7 1247 1225 54 0 0 chr12 86774422 86774569 -34482961 - B1_Mus2 SINE Alu 0 147 1 7 1247 851 230 39 5 chr12 86774600 86774805 -34482725 - B3 SINE B2 -1 215 4 7 1247 208 312 0 49 chr12 86775498 86775579 -34481951 + C-rich Low_complexity Low_complexity 2 78 0 7 1247 255 275 0 68 chr12 86775587 86775661 -34481869 - B1F SINE Alu -6 143 75 7 1247 560 231 28 0 chr12 86775710 86775818 -34481712 + RSINE1 SINE B4 14 124 -41 7 1247 501 17 0 0 chr12 86775818 86775876 -34481654 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1247 225 275 57 38 chr12 86775909 86775923 -34481607 - YREP_Mm Unknown Unknown -1486 326 311 7 1247 329 336 63 9 chr12 86775923 86776034 -34481496 + PB1D10 SINE Alu 1 117 0 7 1247 721 196 22 7 chr12 86776039 86776178 -34481352 + B1_Mur1 SINE Alu 1 141 -8 7 1247 210 234 0 0 chr12 86777058 86777105 -34480425 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1247 189 0 0 0 chr12 86777398 86777419 -34480111 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1247 378 0 0 0 chr12 86777459 86777501 -34480029 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1247 290 167 34 26 chr12 86778872 86778989 -34478541 + (TCTCTG)n Simple_repeat Simple_repeat 3 120 0 7 1247 198 0 0 0 chr12 86779135 86779157 -34478373 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1247 613 234 7 35 chr12 86779157 86779299 -34478231 - B1_Mur1 SINE Alu -11 138 1 7 1247 184 268 0 51 chr12 86779391 86779450 -34478080 + L2b LINE L2 3023 3078 -309 7 1247 339 267 27 0 chr12 86779488 86779563 -34477967 - PB1D10 SINE Alu -24 93 17 7 1247 267 333 44 0 chr12 86779489 86779579 -34477951 - ID_B1 SINE B4 -51 173 80 7 1247 204 211 45 149 chr12 86779736 86779803 -34477727 + L2b LINE L2 3328 3424 -2 7 1247 356 308 19 9 chr12 86780223 86780328 -34477202 + PB1D10 SINE Alu 11 116 -1 7 1247 253 258 61 0 chr12 86780341 86780407 -34477123 + ID4_ SINE ID 4 73 -10 7 1247 410 252 124 18 chr12 86781431 86781544 -34475986 - ID_B1 SINE B4 -12 212 88 7 1247 664 194 70 0 chr12 86782071 86782200 -34475330 - B1_Mur1 SINE Alu -1 148 11 7 1247 454 301 25 98 chr12 86782273 86782476 -34475054 - MIR SINE MIR -43 219 32 7 1247 204 355 54 22 chr12 86782817 86782909 -34474621 - MIRm SINE MIR -3 273 179 7 1247 403 274 88 0 chr12 86783199 86783312 -34474218 - ID_B1 SINE B4 -15 209 87 7 1247 23 86 0 0 chr12 86783820 86783878 -34473652 + AT_rich Low_complexity Low_complexity 1 58 0 7 1247 503 358 49 13 chr12 86784299 86784523 -34473007 - MLT1K LTR MaLR -362 233 2 7 1247 370 260 124 9 chr12 86784523 86784628 -34472902 + PB1D10 SINE Alu 1 117 0 7 1247 791 246 0 123 chr12 86784635 86784871 -34472659 + B3 SINE B2 5 211 -5 7 1247 519 231 216 0 chr12 86784901 86785035 -34472495 + RSINE1 SINE B4 3 165 0 7 1247 414 0 0 0 chr12 86785035 86785081 -34472449 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 7 1247 802 275 110 98 chr12 86786292 86786691 -34470839 + MTD LTR MaLR 1 404 -15 7 1247 608 291 43 7 chr12 86786939 86787137 -34470393 - B3A SINE B2 -8 208 2 7 1247 360 119 0 0 chr12 86787153 86787212 -34470318 + (CCCTAA)n Simple_repeat Simple_repeat 2 60 0 7 1247 231 132 0 0 chr12 86787212 86787250 -34470280 - B3A SINE B2 -159 39 2 7 1247 274 267 59 144 chr12 86787254 86787407 -34470123 - L2b LINE L2 -14 3373 3234 7 1247 576 283 7 7 chr12 86787456 86787595 -34469935 + ID_B1 SINE B4 84 222 -2 7 1247 369 0 0 0 chr12 86787657 86787698 -34469832 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1247 214 362 34 17 chr12 86787880 86787998 -34469532 + MIRb SINE MIR 56 175 -87 7 1247 309 51 0 0 chr12 86788273 86788312 -34469218 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1247 836 236 120 5 chr12 86789114 86789267 -34468263 + MTE2a LTR MaLR 1 169 -210 7 1247 654 58 0 0 chr12 86789267 86789354 -34468176 + (GA)n Simple_repeat Simple_repeat 2 88 0 7 1247 836 260 119 5 chr12 86789354 86789436 -34468094 + MTE2a LTR MaLR 170 262 -117 7 1247 656 266 20 99 chr12 86789415 86789689 -34467841 + MTE2b LTR MaLR 118 379 0 7 1247 518 284 112 0 chr12 86789795 86789929 -34467601 - MTE2a LTR MaLR -230 149 1 7 1247 440 263 0 0 chr12 86790086 86790181 -34467349 + B1F2 SINE Alu 41 135 -14 7 1247 206 320 98 0 chr12 86790629 86790751 -34466779 + MIR SINE MIR 56 189 -73 7 1247 354 270 49 42 chr12 86791422 86791565 -34465965 + MIR SINE MIR 21 164 -98 7 1247 412 235 144 25 chr12 86791634 86791752 -34465778 + ID_B1 SINE B4 86 217 -7 7 1247 247 228 105 0 chr12 86791702 86791759 -34465771 + B1_Mur1 SINE Alu 87 149 0 7 1247 234 0 0 0 chr12 86792049 86792075 -34465455 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 7 1247 381 206 104 38 chr12 86792079 86792186 -34465344 - PB1D7 SINE Alu 0 127 18 7 1247 1134 82 0 20 chr12 86792194 86792343 -34465187 + B1_Mus1 SINE Alu 2 147 -1 7 1247 259 23 0 65 chr12 86792348 86792394 -34465136 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 7 1247 237 186 0 54 chr12 86792412 86792486 -34465044 + T-rich Low_complexity Low_complexity 3 72 0 7 1247 261 232 0 0 chr12 86793584 86793679 -34463851 + (CCCA)n Simple_repeat Simple_repeat 1 95 0 7 1247 205 243 69 0 chr12 86793848 86793929 -34463601 + MIRc SINE MIR 86 166 -96 7 1247 1110 95 7 0 chr12 86794096 86794243 -34463287 - B1_Mus1 SINE Alu 0 148 1 7 1247 216 291 66 28 chr12 86795196 86795302 -34462228 - PB1D10 SINE Alu -3 114 5 7 1247 271 246 26 115 chr12 86797278 86797356 -34460174 - ID4_ SINE ID -12 71 1 7 1247 246 81 0 0 chr12 86798451 86798488 -34459042 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1247 471 18 0 0 chr12 86798564 86798620 -34458910 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1247 370 125 0 0 chr12 86798642 86798698 -34458832 - B3A SINE B2 -142 56 1 7 1247 851 224 65 25 chr12 86799284 86799485 -34458045 + ID_B1 SINE B4 1 209 -15 7 1247 351 156 161 32 chr12 86799681 86799774 -34457756 + PB1D7 SINE Alu 8 112 -8 7 1247 213 39 0 0 chr12 86799776 86799802 -34457728 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 1247 489 186 19 29 chr12 86799824 86799929 -34457601 + PB1D9 SINE Alu 13 116 -4 7 1247 2706 176 14 86 chr12 86800002 86800227 -34457303 + RMER15 LTR ERVL 11 213 -362 7 1247 190 29 28 56 chr12 86800227 86800263 -34457267 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 7 1247 682 153 113 15 chr12 86800273 86800406 -34457124 + B1_Mus2 SINE Alu 1 146 -1 7 1247 2706 176 14 86 chr12 86800406 86800754 -34456776 + RMER15 LTR ERVL 219 553 -22 7 1247 189 0 0 0 chr12 86801106 86801127 -34456403 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 1247 396 0 0 0 chr12 86801139 86801183 -34456347 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1247 300 282 42 0 chr12 86801190 86801261 -34456269 + ID4_ SINE ID 10 83 0 7 1247 1048 174 26 16 chr12 86801901 86802094 -34455436 - B3A SINE B2 -3 195 1 7 1247 423 0 0 0 chr12 86802212 86802259 -34455271 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1247 397 269 40 60 chr12 86802332 86802482 -34455048 + B1F SINE Alu 1 147 -2 7 1247 492 99 0 0 chr12 86802638 86802709 -34454821 + (TATG)n Simple_repeat Simple_repeat 1 71 0 7 1247 198 275 0 0 chr12 86804119 86804188 -34453342 + CT-rich Low_complexity Low_complexity 2 70 0 7 1247 249 162 0 0 chr12 86804436 86804504 -34453026 + (CAGAGA)n Simple_repeat Simple_repeat 1 68 0 7 1247 216 309 123 6 chr12 86804629 86804792 -34452738 + L2c LINE L2 3200 3381 -6 7 1247 640 276 0 7 chr12 86805134 86805280 -34452250 + B1F1 SINE Alu 1 145 -4 7 1247 396 0 0 0 chr12 86806106 86806150 -34451380 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1247 233 333 62 18 chr12 86806151 86806264 -34451266 - B1_Mur3 SINE Alu -9 140 23 7 1247 417 250 0 0 chr12 86806393 86806473 -34451057 - ID4 SINE ID -2 81 2 7 1247 244 270 143 48 chr12 86806475 86806580 -34450950 - PB1D10 SINE Alu -1 116 2 7 1247 682 203 0 8 chr12 86806600 86806719 -34450811 - PB1D9 SINE Alu -2 118 1 7 1247 434 207 33 0 chr12 86806719 86806823 -34450707 - PB1D10 SINE Alu -23 126 14 7 1247 299 189 66 26 chr12 86806758 86806834 -34450696 - B4A SINE B4 -125 167 89 7 1247 363 96 0 0 chr12 86806958 86807010 -34450520 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1247 473 255 0 0 chr12 86807289 86807383 -34450147 + PB1D7 SINE Alu 26 119 -1 8 1247 219 319 118 72 chr12 86807450 86807878 -34449652 - L2c LINE L2 0 3387 2934 8 1247 247 211 17 17 chr12 86810017 86810075 -34447455 + CT-rich Low_complexity Low_complexity 3 60 0 8 1247 600 209 80 29 chr12 86810226 86810364 -34447166 - B1F SINE Alu 0 149 5 8 1247 465 219 94 0 chr12 86810676 86810804 -34446726 - L1MA7 LINE L1 -1 6299 6160 8 1247 275 211 70 134 chr12 86810817 86810959 -34446571 - YREP_Mm Unknown Unknown -1460 352 220 8 1247 456 258 79 16 chr12 86810861 86810987 -34446543 + ID_B1 SINE B4 82 215 -9 8 1247 308 250 0 10 chr12 86810995 86811092 -34446438 + (TG)n Simple_repeat Simple_repeat 1 96 0 8 1247 512 300 78 16 chr12 86811093 86811350 -34446180 - L1MA7 LINE L1 -214 6077 5805 8 1247 434 35 0 0 chr12 86811354 86811412 -34446118 + L1Md_F3 LINE L1 6513 6570 -14 8 1247 21 0 0 0 chr12 86811446 86811467 -34446063 + AT_rich Low_complexity Low_complexity 1 21 0 8 1247 221 295 17 196 chr12 86811529 86811702 -34445828 - B4 SINE B4 -145 147 6 8 1247 312 266 39 10 chr12 86811607 86811703 -34445827 - ID4_ SINE ID -53 99 5 8 1247 1185 62 0 7 chr12 86811735 86811882 -34445648 + B1_Mus1 SINE Alu 3 148 0 8 1247 1185 68 0 13 chr12 86812188 86812337 -34445193 - B1_Mus2 SINE Alu 0 147 1 8 1247 296 122 0 0 chr12 86812339 86812380 -34445150 - B3 SINE B2 -175 41 1 8 1247 216 0 0 0 chr12 86817618 86817642 -34439888 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1247 27 0 0 0 chr12 86818086 86818113 -34439417 + AT_rich Low_complexity Low_complexity 1 27 0 8 1247 366 80 0 0 chr12 86818651 86818701 -34438829 + (TA)n Simple_repeat Simple_repeat 1 50 0 8 1247 227 327 185 37 chr12 86818760 86818868 -34438662 - RSINE1 SINE B4 -40 125 2 8 1247 788 271 23 32 chr12 86818888 86819105 -34438425 - B3 SINE B2 0 216 2 8 1247 378 0 0 0 chr12 86819155 86819197 -34438333 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1247 617 268 31 8 chr12 86819224 86819381 -34438149 - ID_B1 SINE B4 -49 243 80 8 1247 207 0 0 0 chr12 86821708 86821731 -34435799 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 8 1247 185 196 51 51 chr12 86821783 86821842 -34435688 + L2c LINE L2 3114 3172 -254 8 1247 606 291 35 41 chr12 86822165 86822362 -34435168 + B3A SINE B2 3 198 0 8 1247 354 227 129 52 chr12 86822396 86822512 -34435018 + RSINE1 SINE B4 12 136 -29 8 1247 657 246 0 23 chr12 86822550 86822679 -34434851 + B1F SINE Alu 11 136 -13 8 1247 252 230 79 26 chr12 86823303 86823379 -34434151 + ID4 SINE ID 1 80 -3 8 1247 291 256 174 17 chr12 86823557 86823689 -34433841 + MIRb SINE MIR 26 160 -108 8 1247 214 316 19 58 chr12 86824407 86824511 -34433019 + L2c LINE L2 3281 3380 -7 8 1247 451 304 36 55 chr12 86824512 86824699 -34432831 - MIRb SINE MIR -68 200 14 8 1247 448 301 30 55 chr12 86824799 86824964 -34432566 + RSINE1 SINE B4 1 161 -4 8 1247 303 28 0 0 chr12 86825001 86825037 -34432493 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 8 1247 267 31 0 0 chr12 86825043 86825075 -34432455 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1247 381 277 9 47 chr12 86825104 86825210 -34432320 - RSINE1 SINE B4 -47 118 17 8 1247 566 189 132 20 chr12 86825231 86825382 -34432148 - B2_Mm2 SINE B2 -13 182 15 8 1247 601 191 17 25 chr12 86825418 86825536 -34431994 - B1F2 SINE Alu 0 149 33 8 1247 390 318 14 70 chr12 86825584 86825726 -34431804 + ID_B1 SINE B4 91 224 0 8 1247 413 230 156 86 chr12 86825747 86826004 -34431526 + MER97b DNA MER1_type? 507 781 -272 8 1247 302 241 23 57 chr12 86826152 86826240 -34431290 + B3A SINE B2 1 85 -113 8 1247 25 31 0 0 chr12 86826270 86826302 -34431228 + AT_rich Low_complexity Low_complexity 1 32 0 8 1247 510 306 45 45 chr12 86826308 86826510 -34431020 + ID_B1 SINE B4 2 203 -21 8 1247 261 363 43 22 chr12 86826402 86826540 -34430990 + B1F SINE Alu 9 149 0 8 1247 320 364 32 19 chr12 86826543 86826700 -34430830 - MIR SINE MIR -82 180 22 8 1247 24 53 0 0 chr12 86827111 86827149 -34430381 + GC_rich Low_complexity Low_complexity 1 38 0 8 1247 269 339 109 34 chr12 86828117 86828236 -34429294 - MIR3 SINE MIR -14 194 67 8 1247 357 270 113 0 chr12 86828971 86829086 -34428444 - RSINE1 SINE B4 -35 130 3 8 1247 558 0 0 0 chr12 86829304 86829366 -34428164 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1247 321 262 12 59 chr12 86829467 86829552 -34427978 - RSINE1 SINE B4 -1 164 84 8 1247 746 147 103 76 chr12 86829647 86829831 -34427699 - B2_Mm2 SINE B2 -6 189 1 8 1247 413 291 9 9 chr12 86829952 86830063 -34427467 - PB1D10 SINE Alu -6 111 1 8 1247 216 0 0 0 chr12 86830300 86830324 -34427206 + (TGG)n Simple_repeat Simple_repeat 1 24 0 8 1247 189 252 255 29 chr12 86830502 86830604 -34426926 + MIRm SINE MIR 22 146 -130 8 1247 210 280 100 27 chr12 86830746 86830856 -34426674 + MIRc SINE MIR 47 164 -104 8 1247 216 0 0 0 chr12 86832138 86832162 -34425368 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1247 891 132 7 14 chr12 86832273 86832419 -34425111 - B1_Mus2 SINE Alu 0 147 3 8 1247 654 95 0 0 chr12 86832437 86832532 -34424998 + (TC)n Simple_repeat Simple_repeat 1 95 0 8 1247 326 165 194 0 chr12 86832533 86832636 -34424894 - L1M2 LINE L1 -2943 3200 3078 8 1247 467 276 72 66 chr12 86832642 86832809 -34424721 + ID_B1 SINE B4 57 224 0 8 1247 288 0 0 0 chr12 86832956 86832988 -34424542 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1247 211 196 0 0 chr12 86833311 86833357 -34424173 + G-rich Low_complexity Low_complexity 3 48 0 8 1247 226 282 53 66 chr12 86833662 86833814 -34423716 - L1M3 LINE L1 -405 5778 5629 8 1247 1162 54 7 26 chr12 86833819 86833970 -34423560 + B1_Mus1 SINE Alu 1 148 0 8 1247 441 0 0 0 chr12 86834377 86834426 -34423104 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1247 756 191 0 0 chr12 86834448 86834574 -34422956 - B1_Mus1 SINE Alu -8 140 15 8 1247 462 267 6 74 chr12 86834574 86834610 -34422920 - ID_B1 SINE B4 -8 216 66 8 1247 887 282 116 50 chr12 86834595 86835195 -34422335 - RMER13A LTR ERVK -160 748 102 8 1247 273 138 0 16 chr12 86835346 86835419 -34422111 - L1M2 LINE L1 -867 5276 5169 8 1247 322 306 17 51 chr12 86835419 86835536 -34421994 - BC1_Mm scRNA scRNA -24 128 16 8 1247 1516 62 0 20 chr12 86835569 86835768 -34421762 - B2_Mm2 SINE B2 0 195 1 8 1247 662 145 102 8 chr12 86835841 86835959 -34421571 - B1_Mur1 SINE Alu -19 130 2 8 1247 440 242 88 44 chr12 86835959 86836022 -34421508 - MT2B LTR ERVL -435 166 97 8 1247 251 260 96 0 chr12 86836052 86836125 -34421405 - ID4_ SINE ID -3 80 1 8 1247 275 314 19 9 chr12 86836125 86836231 -34421299 - L1M2 LINE L1 -1150 4993 4887 8 1247 231 212 129 0 chr12 86836410 86836495 -34421035 - ORSL DNA Tip100 -77 198 103 8 1247 295 303 62 35 chr12 86836539 86836652 -34420878 - RSINE1 SINE B4 -47 118 3 8 1247 1083 79 0 0 chr12 86836670 86836809 -34420721 - B1_Mm SINE Alu 0 147 9 8 1247 1178 97 52 42 chr12 86836831 86837024 -34420506 - B2_Mm2 SINE B2 0 195 1 8 1247 205 293 0 17 chr12 86837306 86837365 -34420165 - MIRc SINE MIR -165 103 46 8 1247 435 256 0 0 chr12 86837944 86838034 -34419496 - RSINE1 SINE B4 -74 91 2 8 1247 819 27 243 0 chr12 86838070 86838181 -34419349 + B1_Mus1 SINE Alu 2 139 -9 8 1247 428 253 0 0 chr12 86838292 86838375 -34419155 - ID4 SINE ID 0 83 1 8 1247 630 0 0 0 chr12 86839323 86839393 -34418137 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1247 1422 31 0 200 chr12 86839529 86839769 -34417761 + B2_Mm1a SINE B2 2 193 0 8 1247 510 213 98 0 chr12 86839815 86839937 -34417593 - B1F SINE Alu -6 143 10 8 1247 261 0 0 0 chr12 86839938 86839967 -34417563 + (TA)n Simple_repeat Simple_repeat 2 30 0 8 1247 670 296 46 5 chr12 86840133 86840330 -34417200 - B4A SINE B4 -87 205 1 8 1247 233 210 0 16 chr12 86840336 86840399 -34417131 + CT-rich Low_complexity Low_complexity 3 64 0 8 1247 471 275 0 0 chr12 86840465 86840574 -34416956 - PB1D10 SINE Alu -7 110 2 8 1247 26 0 0 0 chr12 86840831 86840857 -34416673 + GC_rich Low_complexity Low_complexity 1 26 0 8 1247 451 322 26 32 chr12 86840857 86841011 -34416519 + RSINE1 SINE B4 3 155 -10 8 1247 767 272 9 70 chr12 86841041 86841270 -34416260 + B3 SINE B2 2 216 0 8 1247 218 284 108 0 chr12 86841363 86841437 -34416093 + ID4 SINE ID 2 83 0 8 1247 297 258 14 149 chr12 86841477 86841618 -34415912 + MLT1A1 LTR MaLR 3 124 -284 8 1247 414 0 0 0 chr12 86841804 86841850 -34415680 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 8 1247 191 328 215 19 chr12 86842100 86842305 -34415225 - L2a LINE L2 -3 3423 3179 8 1247 1168 223 47 36 chr12 86842680 86843047 -34414483 + RMER19C LTR ERVK 2 288 -449 8 1247 1095 121 48 6 chr12 86843046 86843212 -34414318 - ORR1A2 LTR MaLR -154 173 1 8 1247 352 164 0 71 chr12 86843240 86843274 -34414256 - MYSERV6-int LTR ERVK -177 8782 8754 8 1247 2489 95 0 3 chr12 86843274 86843602 -34413928 + ORR1A2 LTR MaLR 1 327 0 8 1247 352 164 0 71 chr12 86843602 86843652 -34413878 - MYSERV6-int LTR ERVK -206 8753 8704 8 1247 2414 202 78 62 chr12 86843841 86844481 -34413049 - MYSERV6-int LTR ERVK -256 8703 8054 8 1247 424 125 0 0 chr12 86844483 86844547 -34412983 + RMER19C LTR ERVK 3 66 -545 8 1247 1824 262 7 0 chr12 86844551 86844974 -34412556 - MYSERV6-int LTR ERVK -372 4888 4463 8 1247 3231 192 22 18 chr12 86844957 86845631 -34411899 - MYSERV6-int LTR ERVK -5287 3672 2996 8 1247 2845 231 52 90 chr12 86846139 86846516 -34411014 - MYSERV6-int LTR ERVK -1698 3562 3161 9 1247 1132 103 0 0 chr12 86846516 86846662 -34410868 + B1_Mus1 SINE Alu 1 146 -2 9 1247 2845 231 52 90 chr12 86846662 86847204 -34410326 - MYSERV6-int LTR ERVK -2100 3160 2678 9 1247 489 289 173 57 chr12 86847273 86847665 -34409865 + RMER20B LTR ERVK 38 468 -48 9 1247 4423 304 34 39 chr12 86847701 86849447 -34408083 - MYSERV6-int LTR ERVK -6835 2124 388 9 1247 1261 90 34 0 chr12 86849489 86849666 -34407864 - B2_Mm2 SINE B2 -12 183 1 9 1247 24 0 0 0 chr12 86849839 86849863 -34407667 + AT_rich Low_complexity Low_complexity 1 24 0 9 1247 180 229 138 62 chr12 86850215 86850280 -34407250 + MER5A DNA MER1_type 75 144 -45 9 1247 23 0 0 0 chr12 86850646 86850669 -34406861 + AT_rich Low_complexity Low_complexity 1 23 0 9 1247 1149 101 107 0 chr12 86850684 86850852 -34406678 - B2_Mm2 SINE B2 -9 186 1 9 1247 495 78 22 11 chr12 86850924 86851015 -34406515 + (TC)n Simple_repeat Simple_repeat 2 93 0 9 1247 924 74 7 7 chr12 86851095 86851231 -34406299 + ORR1B2 LTR MaLR 1 136 -231 9 1247 865 100 8 0 chr12 86851229 86851349 -34406181 + ORR1B2 LTR MaLR 247 367 0 9 1247 2138 189 132 47 chr12 86851871 86852155 -34405375 - Lx7 LINE L1 0 7696 7366 9 1247 216 0 0 0 chr12 86852155 86852179 -34405351 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 1247 2138 189 132 47 chr12 86852179 86852192 -34405338 - Lx7 LINE L1 -331 7365 7358 9 1247 762 136 120 0 chr12 86852192 86852317 -34405213 + B1_Mus1 SINE Alu 1 140 -8 9 1247 239 0 32 0 chr12 86852317 86852348 -34405182 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 1247 2138 189 132 47 chr12 86852348 86852625 -34404905 - Lx7 LINE L1 -339 7357 7072 9 1247 981 200 92 10 chr12 86852621 86852828 -34404702 - Lx7 LINE L1 -1194 6502 6279 9 1247 238 281 42 73 chr12 86853490 86853586 -34403944 - MER5A DNA MER1_type -34 155 63 9 1247 216 299 71 50 chr12 86853620 86853761 -34403769 - MIRb SINE MIR -63 199 56 9 1247 244 108 0 26 chr12 86853899 86853937 -34403593 - MLT1I LTR MaLR -4 407 371 9 1247 496 283 164 36 chr12 86854144 86854364 -34403166 - B4A SINE B4 -36 256 9 9 1247 233 0 0 59 chr12 86855839 86855873 -34401657 + (CAGAG)n Simple_repeat Simple_repeat 3 34 0 9 1247 333 68 0 0 chr12 86855901 86855945 -34401585 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 9 1247 461 240 94 63 chr12 86856348 86856539 -34400991 - B3A SINE B2 0 198 2 9 1247 236 221 0 0 chr12 86856563 86856606 -34400924 - PB1D10 SINE Alu -15 112 64 9 1247 210 143 0 0 chr12 86856617 86856652 -34400878 + (CAT)n Simple_repeat Simple_repeat 3 37 0 9 1247 444 304 37 118 chr12 86856698 86856944 -34400586 - MTE2a LTR MaLR -152 227 2 9 1247 222 300 0 91 chr12 86857382 86857481 -34400049 + MIRb SINE MIR 63 152 -116 9 1247 437 240 35 138 chr12 86857567 86857741 -34399789 + B4 SINE B4 66 221 -71 9 1247 971 125 0 0 chr12 86857601 86857745 -34399785 + B1_Mur4 SINE Alu 6 149 -1 9 1247 231 91 73 0 chr12 86857745 86857800 -34399730 + (CAAAC)n Simple_repeat Simple_repeat 5 63 0 9 1247 611 112 10 0 chr12 86857824 86857922 -34399608 + (GA)n Simple_repeat Simple_repeat 2 100 0 9 1247 594 167 0 0 chr12 86858783 86858891 -34398639 + (TA)n Simple_repeat Simple_repeat 2 109 0 9 1247 292 250 63 63 chr12 86859549 86859567 -34397963 - B1_Mus2 SINE Alu 0 147 135 9 1247 183 42 0 0 chr12 86859567 86859591 -34397939 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1247 412 198 98 11 chr12 86859591 86859683 -34397847 - B1F SINE Alu -13 136 37 9 1247 2982 84 39 128 chr12 86859804 86860374 -34397156 + MURVY-LTR LTR ERV1 1 519 0 9 1247 424 230 70 0 chr12 86860448 86860548 -34396982 + PB1D7 SINE Alu 13 119 -1 9 1247 308 352 108 30 chr12 86861028 86861297 -34396233 + B4A SINE B4 1 290 -2 9 1247 22 0 0 0 chr12 86861696 86861718 -34395812 + GC_rich Low_complexity Low_complexity 1 22 0 9 1247 488 217 191 0 chr12 86862279 86862394 -34395136 - RSINE1 SINE B4 -26 139 3 9 1247 936 169 0 0 chr12 86863112 86863290 -34394240 + (TG)n Simple_repeat Simple_repeat 2 179 0 9 1247 214 236 68 85 chr12 86864754 86864864 -34392666 - MIR SINE MIR -107 169 54 9 1247 261 338 0 0 chr12 86864901 86864969 -34392561 + Tigger10 DNA Tigger 1734 1801 -42 9 1247 180 0 0 0 chr12 86865014 86865034 -34392496 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1247 524 318 26 13 chr12 86865202 86865358 -34392172 + RSINE1 SINE B4 1 158 -7 9 1247 547 202 0 66 chr12 86866079 86866110 -34391420 - ORR1C1 LTR MaLR 0 378 354 9 1247 2244 78 6 50 chr12 86866110 86866447 -34391083 + RLTRETN_Mm LTR ERVK 1 322 0 9 1247 547 254 13 64 chr12 86866447 86866577 -34390953 - ORR1C1 LTR MaLR -25 353 190 9 1247 805 172 12 24 chr12 86866628 86866962 -34390568 + (TATG)n Simple_repeat Simple_repeat 1 329 0 9 1247 695 228 0 6 chr12 86866917 86867098 -34390432 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1247 319 198 56 44 chr12 86867098 86867188 -34390342 - RSINE1 SINE B4 0 165 75 9 1247 247 276 35 0 chr12 86867201 86867259 -34390271 + B1F SINE Alu 3 62 -87 9 1247 553 163 10 58 chr12 86867587 86867691 -34389839 - B1_Mus2 SINE Alu 0 147 49 9 1247 1337 244 53 50 chr12 86867827 86868302 -34389228 - Lx8 LINE L1 0 7473 6998 9 1247 954 106 0 0 chr12 86868314 86868455 -34389075 + (TG)n Simple_repeat Simple_repeat 2 142 0 9 1247 2471 250 63 13 chr12 86868455 86869076 -34388454 - Lx8 LINE L1 -531 6942 6291 9 1247 642 178 267 11 chr12 86869139 86869315 -34388215 - RMER21B LTR ERV1 -275 567 347 9 1247 275 297 0 47 chr12 86869347 86869453 -34388077 - RMER21B LTR ERV1 -661 181 81 9 1247 433 318 52 16 chr12 86869458 86869650 -34387880 - Lx8 LINE L1 -1192 6281 6083 9 1247 763 299 158 46 chr12 86869633 86869931 -34387599 - L1MC4a LINE L1 -793 7089 6777 9 1247 920 188 37 33 chr12 86869931 86870146 -34387384 - B3 SINE B2 0 216 1 9 1247 763 299 158 46 chr12 86870146 86870304 -34387226 - L1MC4a LINE L1 -1106 6776 6609 9 1247 474 120 0 0 chr12 86870304 86870379 -34387151 + (CATA)n Simple_repeat Simple_repeat 2 76 0 9 1247 763 299 158 46 chr12 86870379 86870483 -34387047 - L1MC4a LINE L1 -1274 6608 6466 9 1247 225 65 0 0 chr12 86870685 86870716 -34386814 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1247 277 333 105 53 chr12 86870862 86870995 -34386535 - MIRb SINE MIR -117 151 12 9 1247 269 204 50 28 chr12 86871334 86871432 -34386098 + MIRm SINE MIR 37 138 -130 9 1247 827 339 16 15 chr12 86871443 86871745 -34385785 + MTEa LTR MaLR 72 377 -2 9 1247 970 119 104 33 chr12 86872265 86872447 -34385083 - B2_Mm2 SINE B2 0 195 1 9 1247 852 175 116 45 chr12 86872715 86872913 -34384617 - B3 SINE B2 0 216 5 9 1247 331 247 37 0 chr12 86873217 86873298 -34384232 - ORR1E LTR MaLR -252 107 24 9 1247 231 229 60 60 chr12 86874699 86874815 -34382715 - L2c LINE L2 -217 3170 3055 9 1247 276 331 190 56 chr12 86874992 86875350 -34382180 - MLT1K LTR MaLR -38 557 152 9 1247 240 270 48 0 chr12 86875703 86875766 -34381764 - ID4_ SINE ID -13 70 5 9 1247 300 53 0 0 chr12 86875780 86875818 -34381712 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 9 1247 231 337 30 30 chr12 86875934 86876035 -34381495 + MLT1A0 LTR MaLR 241 341 -24 9 1247 495 307 178 10 chr12 86876056 86876464 -34381066 + LTR16C LTR ERVL 14 489 0 9 1247 471 310 108 17 chr12 86877126 86877421 -34380109 + MLT1J2 LTR MaLR 13 380 -68 9 1247 1261 35 0 0 chr12 86878092 86878237 -34379293 - B1_Mm SINE Alu 0 147 3 9 1247 486 263 20 0 chr12 86878243 86878342 -34379188 - RSINE1 SINE B4 -63 102 2 9 1247 3667 28 31 0 chr12 86878762 86879185 -34378345 - RLTR10C LTR ERVK 0 436 1 9 1247 231 120 60 0 chr12 86879290 86879340 -34378190 + G-rich Low_complexity Low_complexity 2 54 0 9 1247 282 283 36 90 chr12 86879562 86879729 -34377801 - MIRb SINE MIR -45 223 66 9 1247 267 272 18 140 chr12 86879757 86879928 -34377602 - RMER17D LTR ERVK -356 533 384 9 1247 314 188 44 114 chr12 86880135 86880249 -34377281 + RMER10B LTR ERVL 271 376 -22 9 1247 411 184 136 11 chr12 86880253 86880341 -34377189 - PB1D7 SINE Alu -21 99 1 9 1247 389 290 84 35 chr12 86880360 86880503 -34377027 + L2a LINE L2 3270 3419 -7 9 1247 969 76 0 0 chr12 86881324 86881455 -34376075 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 9 1247 195 42 0 0 chr12 86881476 86881500 -34376030 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1247 460 219 0 19 chr12 86881528 86881635 -34375895 + MTD LTR MaLR 74 178 -241 9 1247 423 262 78 0 chr12 86882854 86882957 -34374573 - PB1D10 SINE Alu -5 112 2 9 1247 180 77 0 0 chr12 86882959 86882985 -34374545 + (TTA)n Simple_repeat Simple_repeat 2 27 0 9 1247 311 309 83 14 chr12 86883074 86883207 -34374323 - PB1D10 SINE Alu -8 141 1 9 1247 226 262 30 15 chr12 86883524 86883590 -34373940 - Tigger16b DNA Tigger -38 299 233 9 1247 334 324 39 10 chr12 86883592 86883695 -34373835 + PB1D10 SINE Alu 1 106 -11 9 1247 752 243 89 16 chr12 86883787 86884097 -34373433 - MTD LTR MaLR -1 418 8 9 1247 1526 204 166 14 chr12 86884132 86884494 -34373036 + MTD LTR MaLR 1 417 -2 9 1247 185 391 99 52 chr12 86884798 86884870 -34372660 + L4 LINE RTE 1480 1548 -481 9 1247 1866 159 92 54 chr12 86884870 86885296 -34372234 - RMER10A LTR ERVL 0 442 1 9 1247 185 391 99 52 chr12 86885296 86885746 -34371784 + L4 LINE RTE 1549 2027 -2 9 1247 180 111 0 0 chr12 86886314 86886341 -34371189 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 1247 659 148 20 106 chr12 86886372 86886523 -34371007 - B1_Mus1 SINE Alu -1 147 10 9 1247 418 212 54 114 chr12 86886401 86886550 -34370980 - MT2B LTR ERVL -321 280 141 9 1247 294 305 31 31 chr12 86887343 86887354 -34370176 - PB1D9 SINE Alu -17 103 6 9 1247 432 241 0 0 chr12 86887354 86887441 -34370089 - ID_B1 SINE B4 -51 173 87 9 1247 344 246 213 8 chr12 86887556 86887571 -34369959 - B4A SINE B4 -51 241 89 9 1247 559 232 89 0 chr12 86887571 86887683 -34369847 - PB1 SINE Alu -2 125 4 9 1247 268 250 82 115 chr12 86887586 86887708 -34369822 - MT2B2 LTR ERVL -323 261 144 9 1247 1058 222 0 5 chr12 86887760 86887968 -34369562 - B3 SINE B2 -9 207 1 9 1247 324 198 117 32 chr12 86888130 86888224 -34369306 + ID_B1 SINE B4 86 187 -37 9 1247 207 336 36 18 chr12 86888911 86889023 -34368507 - L2b LINE L2 -210 3165 3052 1 1247 837 252 33 60 chr12 86890245 86890437 -34367093 + ID_B1 SINE B4 9 198 -26 1 1247 757 111 70 56 chr12 86890437 86890573 -34366957 + B1_Mur4 SINE Alu 2 141 -9 1 1247 198 0 0 0 chr12 86890573 86890595 -34366935 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1247 837 252 33 60 chr12 86890601 86890623 -34366907 + ID_B1 SINE B4 199 217 -7 1 1247 425 319 0 0 chr12 86890708 86890821 -34366709 - PB1 SINE Alu -10 117 5 1 1247 225 0 0 0 chr12 86890985 86891010 -34366520 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1247 991 75 38 0 chr12 86891094 86891227 -34366303 + B1_Mus1 SINE Alu 1 138 -10 1 1247 233 0 62 0 chr12 86891227 86891259 -34366271 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1247 180 0 0 0 chr12 86891259 86891278 -34366252 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1 1247 200 279 0 0 chr12 86891686 86891754 -34365776 + A-rich Low_complexity Low_complexity 1 68 0 1 1247 211 104 62 0 chr12 86891704 86891752 -34365778 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 1247 189 333 115 0 chr12 86891885 86891981 -34365549 - MIRc SINE MIR -30 238 132 1 1247 861 241 64 44 chr12 86892143 86892347 -34365183 - B3 SINE B2 -8 208 1 1 1247 300 320 20 10 chr12 86892886 86892987 -34364543 + MIRc SINE MIR 90 191 -77 1 1247 4406 117 49 16 chr12 86893743 86894415 -34363115 - RMER6A LTR ERVK -1 755 56 1 1247 320 0 25 0 chr12 86894415 86894455 -34363075 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1247 4406 117 49 16 chr12 86894455 86894513 -34363017 - RMER6A LTR ERVK -701 55 1 1 1247 27 96 0 0 chr12 86894690 86894773 -34362757 + AT_rich Low_complexity Low_complexity 1 83 0 1 1247 2890 66 31 3 chr12 86894773 86895154 -34362376 + MTB LTR MaLR 1 392 -8 1 1247 578 277 21 88 chr12 86895201 86895395 -34362135 - B3A SINE B2 -16 182 2 1 1247 482 292 27 18 chr12 86895396 86895616 -34361914 + L1_Rod LINE L1 2772 2993 -2854 1 1247 574 269 45 131 chr12 86895618 86895912 -34361618 + MTE2a LTR MaLR 3 301 -99 1 1247 355 35 53 0 chr12 86895898 86895955 -34361575 - B2_Mm2 SINE B2 -6 189 130 1 1247 1748 180 165 8 chr12 86895952 86896465 -34361065 - RMER19B LTR ERVK -308 594 1 1 1247 455 311 8 24 chr12 86896465 86896578 -34360952 + MTE2a LTR MaLR 265 375 -44 1 1247 383 225 12 0 chr12 86897120 86897200 -34360330 + B3 SINE B2 136 216 0 1 1247 768 262 14 124 chr12 86897203 86897573 -34359957 + L1M2 LINE L1 3494 3822 -2321 1 1247 502 187 36 36 chr12 86897610 86897721 -34359809 + MTD LTR MaLR 12 122 -297 1 1247 351 320 145 93 chr12 86897872 86898217 -34359313 + LTR16A LTR ERVL 25 387 -64 1 1247 355 348 138 26 chr12 86898322 86898722 -34358808 + MLT2F LTR ERVL 58 414 -249 1 1247 1391 71 38 5 chr12 86899238 86899422 -34358108 - B2_Mm2 SINE B2 -5 190 1 1 1247 1249 41 7 0 chr12 86899634 86899781 -34357749 - B1_Mus1 SINE Alu 0 148 1 1 1248 432 0 0 0 chr12 86901989 86902037 -34355493 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1248 560 170 0 0 chr12 86902037 86902131 -34355399 - PB1D7 SINE Alu -9 111 18 1 1248 197 247 0 10 chr12 86902547 86902645 -34354885 + (CACCAT)n Simple_repeat Simple_repeat 2 98 0 1 1248 317 314 42 66 chr12 86902798 86902965 -34354565 + MER5A1 DNA MER1_type 1 163 -3 1 1248 405 0 0 0 chr12 86903197 86903242 -34354288 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1248 195 324 91 18 chr12 86903484 86903594 -34353936 + MIRc SINE MIR 38 155 -113 1 1248 1771 227 27 0 chr12 86903608 86903974 -34353556 + MTE2b LTR MaLR 1 376 -3 1 1248 1231 91 17 0 chr12 86903974 86904150 -34353380 + B2_Mm2 SINE B2 1 179 -16 1 1248 586 274 113 79 chr12 86905216 86905481 -34352049 - MER2 DNA MER2_type -1 344 71 1 1248 1251 247 111 44 chr12 86905487 86905830 -34351700 - ORR1D2 LTR MaLR -2 368 3 1 1248 229 262 87 124 chr12 86905947 86906165 -34351365 + L1MCb LINE L1 1 210 -5835 1 1248 1171 281 156 29 chr12 86906217 86906807 -34350723 + L1MCb LINE L1 309 973 -5072 1 1248 864 161 0 0 chr12 86906815 86906945 -34350585 + B3 SINE B2 1 130 -86 1 1248 263 241 12 0 chr12 86906973 86907056 -34350474 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 1 1248 683 221 34 181 chr12 86907130 86907307 -34350223 - B3A SINE B2 -11 187 36 1 1248 455 48 16 0 chr12 86907307 86907369 -34350161 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1248 914 76 0 0 chr12 86907369 86907487 -34350043 - B1_Mus2 SINE Alu 0 147 30 1 1248 226 205 0 0 chr12 86907484 86907523 -34350007 - B2_Mm2 SINE B2 -152 43 5 1 1248 388 261 114 40 chr12 86907537 86907764 -34349766 + L1MCb LINE L1 1143 1386 -5365 1 1248 1114 282 157 68 chr12 86907774 86908672 -34348858 + L1MC3 LINE L1 6234 7211 -574 1 1248 346 340 157 46 chr12 86908820 86909036 -34348494 - Tigger15a DNA TcMar -391 324 85 1 1248 226 204 20 39 chr12 86909283 86909334 -34348196 + B1F SINE Alu 2 51 -98 1 1248 1203 61 0 13 chr12 86910015 86910165 -34347365 - B1_Mus1 SINE Alu 0 148 1 1 1248 931 127 7 0 chr12 86910165 86910307 -34347223 - B2_Mm2 SINE B2 -51 144 2 1 1248 183 282 45 45 chr12 86910907 86910996 -34346534 + MIR SINE MIR 48 136 -126 1 1248 227 186 0 23 chr12 86911180 86911224 -34346306 - RMER30 DNA MER1_type -152 50 8 1 1248 378 61 0 0 chr12 86911396 86911445 -34346085 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1248 339 25 0 0 chr12 86911445 86911485 -34346045 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1248 353 242 26 26 chr12 86911493 86911629 -34345901 + (TCTCTG)n Simple_repeat Simple_repeat 1 136 0 1 1248 423 0 0 0 chr12 86911629 86911676 -34345854 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1248 353 242 26 26 chr12 86911676 86911692 -34345838 + (TCTCTG)n Simple_repeat Simple_repeat 3 18 0 1 1248 372 229 0 24 chr12 86913576 86913661 -34343869 + ID4 SINE ID 1 83 0 1 1248 273 314 78 146 chr12 86914112 86914407 -34343123 - ORR1E LTR MaLR -82 277 3 1 1248 1269 48 0 0 chr12 86914613 86914760 -34342770 + B1_Mus2 SINE Alu 1 147 0 1 1248 4347 201 70 23 chr12 86914771 86915772 -34341758 - Lx9 LINE L1 -1 7643 6596 1 1248 361 317 130 7 chr12 86915776 86915922 -34341608 + MLT1J LTR MaLR 40 203 -309 1 1248 428 263 170 44 chr12 86915988 86916250 -34341280 - ORR1E LTR MaLR -55 304 10 1 1248 230 356 58 0 chr12 86916648 86916735 -34340795 + MLT1J LTR MaLR 406 497 -65 1 1248 920 225 26 16 chr12 86917920 86918114 -34339416 + ID_B1 SINE B4 8 203 -21 1 1248 842 162 6 16 chr12 86918114 86918296 -34339234 + GA-rich Low_complexity Low_complexity 1 180 0 1 1248 228 263 105 0 chr12 86918316 86918411 -34339119 + L1ME3B LINE L1 5903 6007 -233 1 1248 357 244 24 0 chr12 86918558 86918640 -34338890 + PB1D10 SINE Alu 34 117 0 1 1248 299 237 158 21 chr12 86918654 86918749 -34338781 + PB1 SINE Alu 2 109 -18 1 1248 352 307 19 19 chr12 86918762 86918865 -34338665 + ID_B1 SINE B4 1 103 -121 1 1248 205 262 0 0 chr12 86919225 86919267 -34338263 + L2b LINE L2 3330 3371 -4 1 1248 438 67 21 43 chr12 86919302 86919395 -34338135 + (TCTCTG)n Simple_repeat Simple_repeat 2 92 0 1 1248 929 146 15 0 chr12 86919395 86919532 -34337998 - B1_Mus1 SINE Alu -8 140 2 1 1248 760 299 31 48 chr12 86919649 86919811 -34337719 - B4A SINE B4 -4 288 128 1 1248 198 0 0 0 chr12 86919811 86919833 -34337697 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 1 1248 760 299 31 48 chr12 86919833 86919962 -34337568 - B4A SINE B4 -165 127 2 1 1248 708 247 14 0 chr12 86920566 86920712 -34336818 - B1F SINE Alu -1 148 1 1 1248 394 186 69 49 chr12 86920712 86920803 -34336727 - PB1D10 SINE Alu -10 107 13 1 1248 249 271 11 96 chr12 86920737 86920831 -34336699 - B4 SINE B4 -131 161 76 1 1248 513 0 0 0 chr12 86921086 86921143 -34336387 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1248 202 242 254 16 chr12 86921378 86921441 -34336089 - MIRm SINE MIR -115 161 84 1 1248 210 158 0 0 chr12 86921497 86921535 -34335995 + A-rich Low_complexity Low_complexity 1 38 0 1 1248 895 94 39 0 chr12 86921625 86921752 -34335778 + B1_Mur4 SINE Alu 7 138 -12 1 1248 477 0 0 0 chr12 86921752 86921805 -34335725 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1248 371 342 88 36 chr12 86922788 86922982 -34334548 - MIRb SINE MIR -36 232 29 1 1248 336 218 95 95 chr12 86923458 86923595 -34333935 + MLT1A0 LTR MaLR 13 149 -216 1 1248 355 259 26 2 chr12 86923781 86923875 -34333655 + ID4_ SINE ID 5 99 -53 1 1248 2004 107 29 70 chr12 86923886 86924229 -34333301 + ORR1A4 LTR MaLR 1 329 0 1 1248 484 331 11 17 chr12 86924331 86924512 -34333018 + MIRb SINE MIR 65 244 -24 1 1248 433 231 16 41 chr12 86925043 86925165 -34332365 + PB1D9 SINE Alu 1 119 -1 1 1248 596 291 108 14 chr12 86925226 86925439 -34332091 + B4A SINE B4 34 266 -26 1 1248 324 0 0 0 chr12 86925470 86925506 -34332024 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1248 784 294 196 4 chr12 86925524 86926009 -34331521 + L1MC1 LINE L1 5318 5895 -438 1 1248 1325 44 11 47 chr12 86926272 86926426 -34331104 + B2_Mm1a SINE B2 7 159 -34 1 1248 207 0 0 0 chr12 86926426 86926449 -34331081 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1248 1325 44 11 47 chr12 86926449 86926484 -34331046 + B2_Mm1a SINE B2 160 189 -4 1 1248 329 348 59 0 chr12 86926600 86926718 -34330812 + MIR SINE MIR 138 262 0 1 1248 408 40 0 0 chr12 86927218 86927268 -34330262 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1248 180 0 0 0 chr12 86927408 86927428 -34330102 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1248 1062 116 0 0 chr12 86927447 86927585 -34329945 - B1_Mur4 SINE Alu -12 138 1 1 1248 1098 211 5 14 chr12 86928510 86928722 -34328808 - B3 SINE B2 0 216 7 1 1248 278 278 93 51 chr12 86929357 86929523 -34328007 - MIR SINE MIR -75 193 18 1 1248 217 163 0 23 chr12 86929669 86929713 -34327817 + C-rich Low_complexity Low_complexity 5 47 0 1 1248 235 357 104 7 chr12 86929767 86929911 -34327619 + RMER21A LTR ERV1 527 684 -263 1 1248 555 261 49 0 chr12 86930145 86930287 -34327243 - B1F1 SINE Alu 0 149 1 1 1248 1861 230 27 5 chr12 86931919 86932286 -34325244 + MTE2b LTR MaLR 5 379 0 1 1248 238 233 36 12 chr12 86932310 86932392 -34325138 - MIR3 SINE MIR -59 203 113 1 1248 621 271 14 0 chr12 86932419 86932559 -34324971 - ID_B1 SINE B4 0 224 83 1 1248 260 286 54 62 chr12 86932477 86932589 -34324941 - MT2B LTR ERVL -360 241 131 1 1248 515 56 0 14 chr12 86932837 86932909 -34324621 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 1 1248 631 220 41 34 chr12 86932917 86933063 -34324467 - B1F1 SINE Alu -2 147 1 1 1248 537 30 0 0 chr12 86933400 86933467 -34324063 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1 1248 665 238 97 19 chr12 86933467 86933665 -34323865 - ID_B1 SINE B4 -9 215 1 1 1248 225 0 0 0 chr12 86933995 86934020 -34323510 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1248 572 330 90 68 chr12 86934020 86934387 -34323143 - MLT1K LTR MaLR -34 561 187 1 1248 267 270 256 26 chr12 86934530 86934686 -34322844 - ORR1E LTR MaLR -143 216 25 1 1248 241 321 206 0 chr12 86934769 86934900 -34322630 - MER102a DNA MER1_type -3 327 170 1 1248 3110 128 92 24 chr12 86935158 86935693 -34321837 + RMER15 LTR ERVL 2 572 -3 1 1248 1002 122 14 0 chr12 86935880 86936027 -34321503 - B1_Mur3 SINE Alu 0 149 1 1 1248 721 257 92 64 chr12 86936150 86936433 -34321097 + MTEb LTR MaLR 85 375 -4 1 1248 949 290 34 20 chr12 86936498 86936790 -34320740 + Tigger5 DNA MER2_type 2109 2404 -2 1 1248 664 293 76 28 chr12 86937211 86937270 -34320260 - ID_B1 SINE B4 -2 222 164 1 1248 2258 148 39 21 chr12 86937270 86937657 -34319873 + ORR1B1 LTR MaLR 1 394 0 1 1248 664 293 76 28 chr12 86937657 86937808 -34319722 - ID_B1 SINE B4 -61 163 2 1 1248 24 0 0 0 chr12 86940048 86940072 -34317458 + GC_rich Low_complexity Low_complexity 1 24 0 1 1248 27 0 0 0 chr12 86940093 86940120 -34317410 + GC_rich Low_complexity Low_complexity 1 27 0 1 1248 220 200 22 0 chr12 86940206 86940251 -34317279 + C-rich Low_complexity Low_complexity 6 51 0 1 1248 283 194 14 14 chr12 86940379 86940452 -34317078 + (CGG)n Simple_repeat Simple_repeat 1 73 0 1 1248 189 178 0 0 chr12 86942741 86942786 -34314744 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1248 361 335 108 5 chr12 86943758 86943944 -34313586 - MIR SINE MIR -24 238 34 1 1248 273 235 14 29 chr12 86944142 86944212 -34313318 + MIR SINE MIR 62 130 -132 1 1248 204 185 0 0 chr12 86945136 86945190 -34312340 + T-rich Low_complexity Low_complexity 1 54 0 1 1248 471 266 51 15 chr12 86946769 86946953 -34310577 + MIRb SINE MIR 20 204 -4 1 1248 960 159 114 0 chr12 86947195 86947396 -34310134 + URR1A DNA MER1_type 3 226 0 1 1248 1017 182 32 32 chr12 86947470 86947686 -34309844 + B3 SINE B2 1 216 0 1 1248 323 258 42 31 chr12 86949420 86949516 -34308014 + MER5A1 DNA MER1_type 62 158 -8 1 1248 495 0 0 0 chr12 86950163 86950218 -34307312 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1248 576 178 53 112 chr12 86950632 86950784 -34306746 - B1_Mur4 SINE Alu -7 143 1 1 1248 414 0 0 0 chr12 86952011 86952057 -34305473 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1248 256 341 83 38 chr12 86952078 86952343 -34305187 - B4 SINE B4 -14 278 2 1 1248 218 411 11 0 chr12 86952873 86952963 -34304567 - L2a LINE L2 -23 3403 3313 1 1248 1267 65 4 8 chr12 86953115 86953379 -34304151 + (TG)n Simple_repeat Simple_repeat 1 262 0 1 1248 313 279 18 0 chr12 86953991 86954102 -34303428 + (TATG)n Simple_repeat Simple_repeat 3 115 0 1 1248 458 223 0 6 chr12 86954104 86954262 -34303268 + (TG)n Simple_repeat Simple_repeat 2 158 0 1 1248 225 0 0 0 chr12 86955313 86955338 -34302192 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1248 744 274 47 22 chr12 86955527 86955803 -34301727 - B4 SINE B4 -9 283 1 1 1248 183 368 37 9 chr12 86956139 86956246 -34301284 + MIRb SINE MIR 130 239 -29 1 1248 185 309 62 0 chr12 86956434 86956515 -34301015 + MIRc SINE MIR 19 104 -164 1 1248 198 0 0 0 chr12 86957324 86957346 -34300184 + (CTG)n Simple_repeat Simple_repeat 2 23 0 1 1248 279 164 0 0 chr12 86957669 86957730 -34299800 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1248 287 278 192 30 chr12 86958067 86958301 -34299229 + L1M4 LINE L1 5352 5623 -555 1 1248 703 270 20 5 chr12 86958371 86958568 -34298962 + B4A SINE B4 88 287 -5 1 1248 525 198 286 23 chr12 86959055 86959209 -34298321 + B3 SINE B2 1 203 -13 1 1248 802 41 0 39 chr12 86959209 86959337 -34298193 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 1 1248 525 198 286 23 chr12 86959337 86959353 -34298177 + B3 SINE B2 204 216 0 1 1248 1029 237 63 45 chr12 86961435 86961640 -34295890 + B4A SINE B4 1 223 -69 1 1248 265 100 20 20 chr12 86961640 86961691 -34295839 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 1248 1029 237 63 45 chr12 86961691 86961772 -34295758 + B4A SINE B4 224 292 0 1 1248 360 0 0 0 chr12 86962489 86962529 -34295001 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1248 809 76 26 39 chr12 86963947 86964118 -34293412 - B2_Mm2 SINE B2 -16 177 2 1 1248 728 168 249 0 chr12 86964147 86964320 -34293210 - B3 SINE B2 0 216 1 1 1248 665 241 113 25 chr12 86965487 86965509 -34292021 - ID_B1 SINE B4 0 224 204 1 1248 216 0 0 0 chr12 86965509 86965533 -34291997 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1248 665 241 113 25 chr12 86965533 86965714 -34291816 - ID_B1 SINE B4 -21 203 3 1 1248 23 0 0 0 chr12 86965930 86965953 -34291577 + AT_rich Low_complexity Low_complexity 1 23 0 1 1248 194 0 39 0 chr12 86966233 86966259 -34291271 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1248 937 125 0 0 chr12 86966259 86966395 -34291135 - B1_Mur4 SINE Alu -13 137 2 1 1248 876 308 128 50 chr12 86967698 86968364 -34289166 - Lx8 LINE L1 -13 7460 6743 1 1248 245 75 25 0 chr12 86968779 86968819 -34288711 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 1248 284 254 132 25 chr12 86970410 86970553 -34286977 - L2c LINE L2 -203 3172 3018 1 1248 852 240 80 0 chr12 86971437 86971637 -34285893 + ID_B1 SINE B4 8 223 -1 1 1248 183 326 50 40 chr12 86973449 86973548 -34283982 - MIRb SINE MIR -37 231 132 1 1248 241 311 82 0 chr12 86974239 86974361 -34283169 - MIR SINE MIR -82 180 49 1 1248 862 93 0 0 chr12 86975586 86975704 -34281826 + B1_Mur3 SINE Alu 19 136 -13 1 1248 1287 101 5 11 chr12 86975917 86976108 -34281422 - B2_Mm2 SINE B2 -5 190 1 1 1248 408 224 33 123 chr12 86976370 86976492 -34281038 + B1F SINE Alu 18 128 -21 1 1248 598 167 13 165 chr12 86976659 86976817 -34280713 - B1_Mur3 SINE Alu -6 143 10 1 1248 274 336 24 79 chr12 86976762 86976888 -34280642 - B4 SINE B4 -143 149 31 1 1248 497 288 50 0 chr12 86977052 86977191 -34280339 - ID_B1 SINE B4 -2 222 77 1 1248 198 103 0 0 chr12 86977672 86977701 -34279829 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1 1248 1218 27 0 0 chr12 86977701 86977848 -34279682 - B1_Mm SINE Alu 0 147 1 1 1248 944 86 14 0 chr12 86978251 86978390 -34279140 + (TTTC)n Simple_repeat Simple_repeat 3 143 0 1 1248 690 24 0 0 chr12 86978886 86978970 -34278560 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1248 220 259 0 17 chr12 86979918 86979977 -34277553 + GA-rich Low_complexity Low_complexity 1 58 0 1 1248 227 208 0 0 chr12 86980510 86980558 -34276972 + T-rich Low_complexity Low_complexity 1 48 0 1 1248 288 0 0 0 chr12 86980584 86980616 -34276914 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1248 268 337 0 0 chr12 86980863 86980949 -34276581 - MIRb SINE MIR -78 190 105 1 1248 426 283 33 0 chr12 86981050 86981170 -34276360 - B3A SINE B2 -27 171 48 1 1248 335 250 5 26 chr12 86981461 86981562 -34275968 - MIRb SINE MIR -58 150 51 1 1248 950 167 106 14 chr12 86981699 86981906 -34275624 + URR1A DNA MER1_type 1 226 0 1 1248 245 232 43 0 chr12 86982828 86982897 -34274633 - MIR SINE MIR -133 129 58 1 1248 1944 110 147 20 chr12 86983064 86983214 -34274316 - RMER10B LTR ERVL 0 398 241 1 1248 195 42 0 0 chr12 86983214 86983238 -34274292 + (GGA)n Simple_repeat Simple_repeat 2 25 0 1 1248 1944 110 147 20 chr12 86983238 86983440 -34274090 - RMER10B LTR ERVL -158 240 2 1 1248 423 0 0 0 chr12 86983483 86983530 -34274000 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1248 183 42 0 0 chr12 86984626 86984650 -34272880 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1248 503 353 85 7 chr12 86985083 86985377 -34272153 - MLT1D LTR MaLR -7 498 182 1 1248 281 289 56 126 chr12 86985437 86985635 -34271895 - MLT1D LTR MaLR -442 185 2 1 1248 1956 12 177 0 chr12 86985839 86986087 -34271443 + RLTR10B LTR ERVK 1 292 0 1 1248 763 281 30 5 chr12 86986284 86986484 -34271046 + Lx8 LINE L1 7111 7315 -158 1 1248 234 0 0 0 chr12 86986865 86986891 -34270639 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1248 816 188 7 0 chr12 86987613 86987757 -34269773 + B1_Mus2 SINE Alu 3 147 0 1 1248 520 304 25 6 chr12 86987782 86987941 -34269589 - RSINE1 SINE B4 -2 163 2 1 1248 324 0 0 0 chr12 86987977 86988013 -34269517 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1248 425 193 0 161 chr12 86988065 86988195 -34269335 + MT2B LTR ERVL 149 257 -344 1 1248 1015 49 0 40 chr12 86988092 86988240 -34269290 + B1_Mm SINE Alu 6 147 0 1 1248 561 15 0 0 chr12 86988244 86988310 -34269220 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 1 1248 773 204 80 0 chr12 86988313 86988475 -34269055 + MTD LTR MaLR 213 387 -32 1 1248 348 319 93 32 chr12 86988582 86988861 -34268669 + HERV16-int LTR ERVL 2229 2524 -3237 1 1248 397 341 82 82 chr12 86988981 86989333 -34268197 + ORR1E LTR MaLR 8 359 0 1 1248 536 371 56 27 chr12 86989358 86989843 -34267687 + HERV16-int LTR ERVL 2534 3032 -1964 1 1248 306 73 0 0 chr12 86990116 86990157 -34267373 + (TCC)n Simple_repeat Simple_repeat 1 41 0 1 1248 1142 124 32 0 chr12 86990387 86990573 -34266957 - B2_Mm1t SINE B2 -1 192 1 1 1248 477 0 0 0 chr12 86990573 86990626 -34266904 + (TTTTA)n Simple_repeat Simple_repeat 5 57 0 1 1248 297 0 0 0 chr12 86990687 86990720 -34266810 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1248 3252 142 155 95 chr12 86990851 86990883 -34266647 - RMER19B LTR ERVK -12 890 865 1 1248 3041 43 128 2 chr12 86990883 86991305 -34266225 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1248 3252 142 155 95 chr12 86991305 86992112 -34265418 - RMER19B LTR ERVK -38 864 1 1 1248 290 242 0 15 chr12 86992551 86992618 -34264912 - ID4_ SINE ID -6 77 12 1 1248 1089 128 128 0 chr12 86992731 86992927 -34264603 + URR1A DNA MER1_type 2 222 -4 1 1248 343 273 154 16 chr12 86993450 86993573 -34263957 + L1M5 LINE L1 5167 5306 -840 1 1248 855 181 0 7 chr12 86993574 86993724 -34263806 + B1_Mur4 SINE Alu 2 150 0 1 1248 207 139 0 0 chr12 86993724 86993760 -34263770 + (GGA)n Simple_repeat Simple_repeat 3 38 0 1 1248 507 292 153 4 chr12 86993793 86994034 -34263496 + L1MD LINE L1 5325 5601 -2394 1 1248 1158 97 6 11 chr12 86994040 86994217 -34263313 + B2_Mm1t SINE B2 2 177 -16 1 1248 772 260 127 8 chr12 86994334 86994586 -34262944 + B4A SINE B4 2 283 -9 1 1248 464 0 18 0 chr12 86994630 86994686 -34262844 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1248 850 161 0 14 chr12 86994699 86994844 -34262686 + B1_Mur4 SINE Alu 7 149 -1 1 1248 1115 74 0 26 chr12 86994845 86994997 -34262533 + B1_Mus1 SINE Alu 1 148 0 1 1248 34 0 0 0 chr12 86995000 86995034 -34262496 + AT_rich Low_complexity Low_complexity 1 34 0 1 1248 244 262 106 15 chr12 86995128 86995194 -34262336 + RSINE1 SINE B4 1 72 -93 1 1248 806 182 165 36 chr12 86995415 86995526 -34262004 + MTC LTR MaLR 1 111 -310 1 1248 1311 76 11 0 chr12 86995526 86995710 -34261820 - B2_Mm1a SINE B2 -6 187 2 1 1248 806 182 165 36 chr12 86995710 86995792 -34261738 + MTC LTR MaLR 112 219 -202 1 1248 614 309 32 41 chr12 86995966 86996212 -34261318 + MLT1F1 LTR MaLR 326 569 0 1 1248 298 250 97 29 chr12 86996231 86996334 -34261196 - MLT1J1 LTR MaLR -328 116 7 1 1248 291 114 0 0 chr12 86996351 86996395 -34261135 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1248 290 136 364 9 chr12 86996395 86996505 -34261025 - B2_Mm2 SINE B2 0 195 47 1 1248 944 136 0 13 chr12 86996560 86996716 -34260814 - B2_Mm1t SINE B2 -22 171 18 1 1248 31 0 0 0 chr12 86996842 86996873 -34260657 + AT_rich Low_complexity Low_complexity 1 31 0 1 1248 686 245 6 12 chr12 86996917 86997082 -34260448 - RSINE1 SINE B4 0 165 2 1 1248 431 210 0 0 chr12 86997401 86997482 -34260048 - ID4_ SINE ID -1 82 2 1 1248 735 171 0 41 chr12 86997529 86997675 -34259855 + B1_Mur4 SINE Alu 6 145 -5 1 1248 392 196 206 47 chr12 86997734 86997841 -34259689 - B1F SINE Alu -7 142 19 1 1248 247 262 36 36 chr12 86998297 86998408 -34259122 + MIRb SINE MIR 54 164 -104 1 1248 396 0 0 0 chr12 86998558 86998602 -34258928 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1248 675 254 66 66 chr12 86998870 86999127 -34258403 + B4A SINE B4 2 258 -34 1 1248 477 0 0 0 chr12 86999181 86999234 -34258296 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1248 321 26 0 0 chr12 86999235 86999273 -34258257 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1248 231 333 0 0 chr12 86999287 86999359 -34258171 - ORSL DNA Tip100 -186 89 18 1 1248 1040 186 5 0 chr12 86999363 86999551 -34257979 - URR1B DNA MER1_type -2 223 35 1 1248 445 241 9 35 chr12 86999809 86999925 -34257605 - PB1D7 SINE Alu 0 120 8 1 1248 265 344 0 31 chr12 86999841 86999937 -34257593 - ID_B1 SINE B4 -55 169 77 1 1248 428 264 63 9 chr12 87000532 87000643 -34256887 + ID_B1 SINE B4 3 119 -105 1 1248 216 0 0 0 chr12 87000665 87000689 -34256841 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1248 846 19 0 0 chr12 87000689 87000785 -34256745 - B1_Mm SINE Alu -8 139 44 3 1248 378 256 0 0 chr12 87000806 87000888 -34256642 + ID_B1 SINE B4 143 224 0 1 1248 399 197 0 0 chr12 87001063 87001129 -34256401 - RLTR14 LTR ERV1 -2 380 315 4 1248 1031 173 18 0 chr12 87001125 87001293 -34256237 + RLTR17 LTR ERVK 196 366 -326 5 1248 2161 143 0 6 chr12 87001325 87001656 -34255874 - RLTR14 LTR ERV1 -52 330 2 4 1248 198 0 0 0 chr12 87002545 87002567 -34254963 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1248 1179 51 0 0 chr12 87002567 87002704 -34254826 - B1_Mus2 SINE Alu -10 137 1 7 1248 240 109 191 21 chr12 87002744 87002791 -34254739 - B2_Mm2 SINE B2 -94 101 47 8 1248 1310 86 23 0 chr12 87002823 87002998 -34254532 - B2_Mm1a SINE B2 -14 179 1 9 1248 1199 68 0 7 chr12 87003150 87003298 -34254232 - B1_Mm SINE Alu 0 147 1 1 1248 417 100 54 18 chr12 87003545 87003657 -34253873 + A-rich Low_complexity Low_complexity 2 117 0 1 1248 200 34 0 33 chr12 87003840 87003870 -34253660 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1248 22 0 0 0 chr12 87004468 87004490 -34253040 + GC_rich Low_complexity Low_complexity 1 22 0 1 1248 1011 63 0 0 chr12 87004517 87004643 -34252887 - B1_Mus2 SINE Alu -20 127 2 1 1248 360 0 0 0 chr12 87004659 87004699 -34252831 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1248 774 251 153 44 chr12 87004751 87005026 -34252504 - MTE2b LTR MaLR -74 305 1 1 1248 230 332 59 0 chr12 87005037 87005118 -34252412 - MIRc SINE MIR -122 154 72 1 1248 324 355 41 16 chr12 87008009 87008132 -34249398 - MIRb SINE MIR -119 149 24 1 1248 985 75 0 8 chr12 87008269 87008403 -34249127 + B1_Mus1 SINE Alu 10 142 -6 1 1248 798 113 17 0 chr12 87008404 87008519 -34249011 + RLTR11B LTR ERVK 1 117 -336 2 1248 568 201 77 39 chr12 87008695 87008850 -34248680 + MLT1A1 LTR MaLR 248 408 0 2 1248 869 208 51 20 chr12 87009111 87009307 -34248223 + B3 SINE B2 2 203 -13 2 1248 778 119 15 0 chr12 87009314 87009448 -34248082 + (TCC)n Simple_repeat Simple_repeat 1 136 0 2 1248 469 99 25 0 chr12 87009444 87009525 -34248005 + (TC)n Simple_repeat Simple_repeat 1 83 0 2 1248 753 212 13 46 chr12 87009525 87009678 -34247852 - B1_Mur2 SINE Alu 0 149 2 2 1248 180 322 70 55 chr12 87010110 87010238 -34247292 - MIR3 SINE MIR -77 131 2 2 1248 1284 85 11 22 chr12 87010593 87010774 -34246756 + B2_Mm1t SINE B2 1 179 -14 2 1248 219 69 0 0 chr12 87011384 87011413 -34246117 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2 1248 1374 74 16 11 chr12 87011433 87011624 -34245906 - B2_Mm1t SINE B2 -1 192 1 2 1248 195 129 0 0 chr12 87011789 87011820 -34245710 + (CAGGA)n Simple_repeat Simple_repeat 5 35 0 3 1248 1923 158 97 0 chr12 87011851 87012180 -34245350 - ORR1D1 LTR MaLR -2 372 12 3 1248 180 0 0 0 chr12 87012370 87012390 -34245140 + (GGA)n Simple_repeat Simple_repeat 2 21 0 3 1248 258 105 0 0 chr12 87012545 87012583 -34244947 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1248 1277 47 0 0 chr12 87012623 87012771 -34244759 + B1_Mus1 SINE Alu 1 148 0 3 1248 210 191 0 0 chr12 87012774 87012821 -34244709 + GA-rich Low_complexity Low_complexity 1 47 0 3 1248 186 43 0 0 chr12 87012826 87012849 -34244681 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 3 1248 343 286 109 45 chr12 87013005 87013272 -34244258 - HAL1 LINE L1 -794 1713 1430 3 1248 831 73 0 9 chr12 87013274 87013385 -34244145 - B2_Mm2 SINE B2 -83 112 3 3 1248 492 257 81 34 chr12 87013491 87013640 -34243890 - RSINE1 SINE B4 -8 157 2 3 1248 603 0 0 0 chr12 87013656 87013723 -34243807 + (CTTTG)n Simple_repeat Simple_repeat 3 69 0 4 1248 2968 127 88 12 chr12 87014027 87014514 -34243016 - RLTR28 LTR ERVL 0 524 1 4 1248 197 83 28 0 chr12 87014619 87014655 -34242875 + (GTTTG)n Simple_repeat Simple_repeat 3 39 0 4 1248 841 200 7 0 chr12 87014661 87014801 -34242729 - B1_Mur2 SINE Alu -8 141 1 4 1248 210 222 0 0 chr12 87014876 87014930 -34242600 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1248 1025 110 107 145 chr12 87015086 87015320 -34242210 - URR1A DNA MER1_type 0 226 2 4 1248 330 250 120 19 chr12 87015321 87015534 -34241996 - Charlie5 DNA MER1_type -7 2617 2369 4 1248 219 69 0 0 chr12 87015599 87015628 -34241902 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 4 1248 814 175 35 14 chr12 87015635 87015780 -34241750 - B1_Mur4 SINE Alu -1 149 2 4 1248 27 62 0 0 chr12 87016016 87016064 -34241466 + AT_rich Low_complexity Low_complexity 1 48 0 4 1248 470 150 35 17 chr12 87016282 87016397 -34241133 + GA-rich Low_complexity Low_complexity 5 121 0 5 1248 1590 169 86 7 chr12 87016508 87016812 -34240718 - RLTR40 LTR ERVK -328 489 162 5 1248 390 229 0 103 chr12 87016822 87016839 -34240691 - PB1D9 SINE Alu -15 105 89 5 1248 1185 175 27 27 chr12 87016839 87017062 -34240468 + URR1B DNA MER1_type 1 223 -2 5 1248 396 227 263 2 chr12 87017062 87017161 -34240369 - B1_Mus2 SINE Alu -24 123 1 5 1248 267 145 254 28 chr12 87017101 87017172 -34240358 - MT2B LTR ERVL -361 240 154 5 1248 578 216 56 56 chr12 87017176 87017318 -34240212 + B3 SINE B2 70 211 -5 5 1248 221 327 150 19 chr12 87017625 87017809 -34239721 - MIRb SINE MIR 0 268 49 5 1248 21 0 0 0 chr12 87018229 87018250 -34239280 + AT_rich Low_complexity Low_complexity 1 21 0 5 1248 532 296 112 13 chr12 87018251 87018484 -34239046 - Lx8 LINE L1 -3 7470 7215 5 1248 1733 271 78 2 chr12 87018475 87019004 -34238526 - Lx8 LINE L1 -450 7023 6455 5 1248 308 306 42 0 chr12 87019010 87019082 -34238448 - RSINE1 SINE B4 -88 77 3 5 1248 746 127 0 8 chr12 87019084 87019211 -34238319 + (TCC)n Simple_repeat Simple_repeat 2 127 0 6 1248 680 208 121 6 chr12 87019218 87019392 -34238138 - B2_Mm2 SINE B2 -1 194 1 6 1248 892 154 28 0 chr12 87019407 87019550 -34237980 - B1_Mur4 SINE Alu 0 150 4 6 1248 227 79 26 0 chr12 87021111 87021149 -34236381 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 6 1248 909 227 85 10 chr12 87021459 87021659 -34235871 + B3 SINE B2 2 216 0 6 1248 543 205 83 38 chr12 87022222 87022379 -34235151 + RSINE1 SINE B4 2 165 0 6 1248 2076 179 42 11 chr12 87022392 87022770 -34234760 - MTD LTR MaLR -29 390 1 6 1248 678 197 0 93 chr12 87022942 87023082 -34234448 - B1F2 SINE Alu -21 128 2 6 1248 488 205 39 175 chr12 87023135 87023168 -34234362 + B1_Mur2 SINE Alu 9 30 -119 6 1248 1073 90 28 0 chr12 87023168 87023312 -34234218 + B1_Mus1 SINE Alu 1 148 0 6 1248 550 180 10 47 chr12 87023312 87023432 -34234098 + PB1D9 SINE Alu 31 141 -8 6 1248 804 222 18 30 chr12 87023419 87023577 -34233953 + B3 SINE B2 48 205 -11 7 1248 252 0 0 0 chr12 87023577 87023605 -34233925 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 7 1248 797 328 29 4 chr12 87023732 87023977 -34233553 + MLT1F1 LTR MaLR 319 569 0 7 1248 306 194 0 0 chr12 87024048 87024115 -34233415 + (ATG)n Simple_repeat Simple_repeat 2 68 0 7 1248 434 236 148 43 chr12 87024146 87024261 -34233269 - RSINE1 SINE B4 -38 127 1 7 1248 207 100 0 0 chr12 87024264 87024294 -34233236 + (TTA)n Simple_repeat Simple_repeat 1 30 0 7 1248 318 219 0 15 chr12 87024342 87024407 -34233123 - ID4_ SINE ID -18 65 2 7 1248 28 61 0 0 chr12 87024409 87024458 -34233072 + AT_rich Low_complexity Low_complexity 1 49 0 7 1248 216 300 16 16 chr12 87024863 87024924 -34232606 - L2c LINE L2 -6 3381 3321 7 1248 329 314 39 128 chr12 87024946 87025180 -34232350 + L2a LINE L2 2653 2865 -554 7 1248 448 298 168 13 chr12 87025227 87025465 -34232065 + MLT1H LTR MaLR 89 363 -186 8 1248 194 238 0 23 chr12 87025637 87025680 -34231850 + L2b LINE L2 3328 3369 -6 8 1248 385 299 215 30 chr12 87025813 87026225 -34231305 + L2a LINE L2 2846 3334 -92 7 1248 414 57 0 0 chr12 87026225 87026278 -34231252 + (TTA)n Simple_repeat Simple_repeat 2 54 0 8 1248 385 299 251 21 chr12 87026278 87026293 -34231237 + L2a LINE L2 3335 3349 -77 7 1248 965 200 55 10 chr12 87026424 87026626 -34230904 - B3 SINE B2 -5 211 1 8 1248 244 356 67 8 chr12 87029621 87029740 -34227790 + MIRb SINE MIR 122 247 -21 8 1248 365 222 10 0 chr12 87029795 87029894 -34227636 + (CA)n Simple_repeat Simple_repeat 1 100 0 8 1248 189 107 0 0 chr12 87030126 87030154 -34227376 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 8 1248 382 243 150 47 chr12 87031270 87031359 -34226171 + B4 SINE B4 1 205 -87 8 1248 549 216 0 26 chr12 87031359 87031473 -34226057 + B1_Mur4 SINE Alu 40 150 0 8 1248 382 243 150 47 chr12 87031473 87031489 -34226041 + B4 SINE B4 206 246 -46 8 1248 681 289 24 56 chr12 87031498 87031711 -34225819 + B4A SINE B4 81 286 -6 8 1249 350 312 144 31 chr12 87032260 87032455 -34225075 + MIRb SINE MIR 37 253 -15 9 1249 233 278 42 78 chr12 87032525 87032716 -34224814 + RLTR21 LTR ERVK 1071 1254 -318 9 1249 309 256 10 113 chr12 87033449 87033546 -34223984 + MT2B LTR ERVL 152 238 -363 9 1249 535 183 21 11 chr12 87033485 87033579 -34223951 + PB1D9 SINE Alu 21 115 -5 9 1249 624 177 7 14 chr12 87033598 87033741 -34223789 + CT-rich Low_complexity Low_complexity 1 142 0 9 1249 1184 81 0 0 chr12 87033741 87033889 -34223641 - B1_Mus1 SINE Alu 0 148 1 9 1249 216 0 0 0 chr12 87034041 87034065 -34223465 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1249 224 219 0 0 chr12 87034445 87034486 -34223044 - ID4_ SINE ID 0 83 43 9 1249 510 173 0 0 chr12 87034722 87034797 -34222733 - B3A SINE B2 -123 75 1 9 1249 377 213 0 26 chr12 87034864 87034941 -34222589 - RSINE1 SINE B4 -57 108 34 9 1249 1186 42 28 0 chr12 87034941 87035084 -34222446 + B1_Mm SINE Alu 1 147 0 1 1249 234 0 0 0 chr12 87035084 87035110 -34222420 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1249 243 229 0 0 chr12 87035110 87035158 -34222372 - RSINE1 SINE B4 -116 49 2 9 1249 201 39 0 0 chr12 87035523 87035549 -34221981 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 1 1249 1216 36 0 0 chr12 87036200 87036338 -34221192 + B1_Mm SINE Alu 1 138 -9 1 1249 405 0 0 0 chr12 87036338 87036383 -34221147 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1249 191 62 0 59 chr12 87036661 87036695 -34220835 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 1249 225 246 14 14 chr12 87036740 87036810 -34220720 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1249 195 264 125 0 chr12 87037651 87037723 -34219807 - MIR3 SINE MIR -3 205 125 1 1249 669 208 71 21 chr12 87037971 87038150 -34219380 - B3 SINE B2 -11 184 3 1 1249 1223 74 0 0 chr12 87038512 87038660 -34218870 + B1_Mus1 SINE Alu 1 148 0 1 1249 215 312 0 0 chr12 87038670 87038718 -34218812 - ID4_ SINE ID -28 55 8 1 1249 529 240 23 15 chr12 87038744 87038875 -34218655 - B1F SINE Alu -8 141 10 1 1249 350 315 172 33 chr12 87038880 87039031 -34218499 - MER20 DNA MER1_type -37 182 11 1 1249 189 0 0 0 chr12 87039063 87039084 -34218446 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1249 824 143 45 0 chr12 87040041 87040174 -34217356 + B1_Mur1 SINE Alu 2 140 -9 1 1249 189 171 0 0 chr12 87040206 87040241 -34217289 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1249 432 0 0 0 chr12 87040249 87040297 -34217233 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1249 326 343 0 18 chr12 87040366 87040476 -34217054 - MER94 DNA AcHobo -11 123 16 1 1249 269 299 113 34 chr12 87041042 87041246 -34216284 + RLTR21 LTR ERVK 1181 1400 -172 1 1249 443 233 59 22 chr12 87041277 87041413 -34216117 - Lx8 LINE L1 -590 6883 6743 1 1249 238 289 36 63 chr12 87042004 87042115 -34215415 - L2b LINE L2 -19 3356 3249 1 1249 325 302 98 26 chr12 87042196 87042349 -34215181 + RSINE1 SINE B4 2 165 0 1 1249 1165 82 0 0 chr12 87042404 87042551 -34214979 + B1_Mus1 SINE Alu 2 148 0 1 1249 258 175 388 0 chr12 87042719 87042799 -34214731 + PB1D9 SINE Alu 9 119 -1 1 1249 259 325 12 12 chr12 87042906 87042987 -34214543 - MER5B DNA MER1_type -3 175 95 1 1249 195 42 0 0 chr12 87043699 87043723 -34213807 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1249 810 236 112 11 chr12 87044234 87044422 -34213108 + B3 SINE B2 1 207 -9 1 1249 403 320 74 17 chr12 87044824 87044999 -34212531 + MIRb SINE MIR 26 210 -58 1 1249 679 203 50 14 chr12 87045013 87045153 -34212377 + B1_Mur1 SINE Alu 5 149 0 1 1249 202 328 0 17 chr12 87047445 87047504 -34210026 - MER5A DNA MER1_type -4 185 128 1 1249 554 265 182 28 chr12 87047508 87047760 -34209770 + B4 SINE B4 2 292 0 1 1249 589 281 54 10 chr12 87048093 87048348 -34209182 + MER44D DNA MER2_type 6 282 -57 1 1249 192 152 0 0 chr12 87048575 87048608 -34208922 + (CGTG)n Simple_repeat Simple_repeat 3 35 0 1 1249 218 245 19 0 chr12 87048761 87048814 -34208716 + T-rich Low_complexity Low_complexity 1 54 0 1 1249 299 219 146 0 chr12 87048892 87049015 -34208515 - B1F1 SINE Alu -8 141 1 1 1249 234 322 32 11 chr12 87052039 87052133 -34205397 - MER102c DNA MER1_type -145 186 91 1 1249 404 62 16 0 chr12 87052141 87052205 -34205325 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1249 292 293 13 0 chr12 87052216 87052291 -34205239 - ID4_ SINE ID -4 79 4 1 1249 603 225 75 0 chr12 87052343 87052463 -34205067 - B1F1 SINE Alu -16 133 5 1 1249 342 292 261 19 chr12 87052513 87052783 -34204747 - MER115 DNA Tip100 0 693 359 1 1249 1185 42 7 7 chr12 87052918 87053062 -34204468 + B1_Mus2 SINE Alu 1 144 -3 1 1249 198 0 0 0 chr12 87053062 87053084 -34204446 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1249 327 237 9 85 chr12 87053420 87053526 -34204004 - PB1D10 SINE Alu -1 116 19 1 1249 1410 134 13 13 chr12 87053750 87053976 -34203554 - MTC LTR MaLR 0 421 196 1 1249 697 142 35 12 chr12 87053976 87054102 -34203428 + CT-rich Low_complexity Low_complexity 48 178 0 1 1249 1111 74 23 6 chr12 87054102 87054279 -34203251 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1249 697 142 35 12 chr12 87054279 87054323 -34203207 + polypyrimidine Low_complexity Low_complexity 4 47 0 1 1249 830 152 11 27 chr12 87054334 87054452 -34203078 + polypyrimidine Low_complexity Low_complexity 62 180 0 1 1249 1028 103 17 6 chr12 87054452 87054627 -34202903 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 1 1249 830 152 11 27 chr12 87054627 87054691 -34202839 + polypyrimidine Low_complexity Low_complexity 1 61 0 1 1249 3884 156 83 42 chr12 87054691 87055497 -34202033 - RMER1A Other Other 0 1030 192 1 1249 282 282 149 33 chr12 87055750 87055871 -34201659 + MLT1J1 LTR MaLR 2 136 -308 1 1249 961 196 65 5 chr12 87055915 87056115 -34201415 + B3 SINE B2 1 212 -4 1 1249 245 338 106 15 chr12 87056179 87056311 -34201219 + MLT1J1 LTR MaLR 229 372 -140 1 1249 1287 101 0 82 chr12 87056332 87056493 -34201037 + B2_Mm2 SINE B2 1 161 -34 1 1249 342 0 0 0 chr12 87056493 87056531 -34200999 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1 1249 1242 115 0 68 chr12 87056531 87056575 -34200955 + B2_Mm2 SINE B2 162 192 -3 1 1249 713 220 0 7 chr12 87056585 87056727 -34200803 + B1_Mur2 SINE Alu 1 141 -8 1 1249 510 214 0 0 chr12 87056738 87056827 -34200703 + B3A SINE B2 1 89 -109 1 1249 302 85 170 0 chr12 87056998 87057045 -34200485 - B2_Mm2 SINE B2 -94 101 47 1 1249 1319 71 6 0 chr12 87057082 87057252 -34200278 - B2_Mm1a SINE B2 -22 171 1 1 1249 197 65 0 31 chr12 87057370 87057402 -34200128 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1 1249 1028 117 35 0 chr12 87057404 87057549 -34199981 - B1_Mur4 SINE Alu 0 150 1 1 1249 1996 79 103 0 chr12 87057559 87057850 -34199680 - ORR1A2 LTR MaLR -6 321 1 1 1249 1348 92 5 0 chr12 87057892 87058076 -34199454 - B2_Mm1t SINE B2 -7 186 2 1 1249 381 245 147 0 chr12 87058084 87058186 -34199344 - PB1D9 SINE Alu 0 120 4 1 1249 1109 64 11 28 chr12 87058186 87058364 -34199166 + (TCTCCC)n Simple_repeat Simple_repeat 6 180 0 1 1249 6639 250 102 100 chr12 87058364 87059246 -34198284 + MYSERV-int LTR ERVK 3151 4067 -2483 1 1249 261 0 0 0 chr12 87059246 87059275 -34198255 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1249 1184 44 0 0 chr12 87059275 87059411 -34198119 - B1_Mm SINE Alu -10 137 2 1 1249 6639 250 102 100 chr12 87059411 87059424 -34198106 + MYSERV-int LTR ERVK 4068 4068 -2482 1 1249 983 66 0 0 chr12 87059424 87059545 -34197985 - 5S rRNA rRNA 0 121 1 1 1249 6639 250 102 100 chr12 87059545 87059650 -34197880 + MYSERV-int LTR ERVK 4068 4145 -2405 1 1249 1425 75 37 0 chr12 87059650 87059837 -34197693 - B2_Mm2 SINE B2 0 195 2 1 1249 6639 250 102 100 chr12 87059837 87060765 -34196765 + MYSERV-int LTR ERVK 4146 5024 -1526 1 1249 3495 35 0 0 chr12 87060765 87061161 -34196369 + MTA_Mm LTR MaLR 1 396 0 1 1249 6639 241 95 105 chr12 87061161 87061817 -34195713 + MYSERV-int LTR ERVK 5025 5724 -826 1 1249 432 0 0 0 chr12 87061817 87061865 -34195665 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 1 1249 6639 250 102 100 chr12 87061865 87062664 -34194866 + MYSERV-int LTR ERVK 5725 6545 -5 1 1249 1349 246 82 66 chr12 87062664 87063152 -34194378 + RLTR12B LTR ERVK 1 515 -13 1 1249 1442 64 16 16 chr12 87063304 87063494 -34194036 - B2_Mm2 SINE B2 -4 191 2 1 1249 243 0 0 0 chr12 87063504 87063531 -34193999 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1249 1228 54 0 0 chr12 87063531 87063678 -34193852 - B1_Mus2 SINE Alu 0 147 1 1 1249 1110 130 0 0 chr12 87064057 87064234 -34193296 + (TTC)n Simple_repeat Simple_repeat 3 179 0 1 1249 285 29 0 0 chr12 87064234 87064268 -34193262 + (TCC)n Simple_repeat Simple_repeat 2 35 0 1 1249 456 184 0 0 chr12 87064265 87064363 -34193167 + CT-rich Low_complexity Low_complexity 2 99 0 1 1249 850 157 45 0 chr12 87064378 87064512 -34193018 + B1_Mur1 SINE Alu 4 143 -6 1 1249 261 0 0 0 chr12 87064921 87064950 -34192580 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1 1249 733 283 0 22 chr12 87065004 87065188 -34192342 + B3A SINE B2 1 180 -18 1 1249 679 239 169 24 chr12 87065255 87065504 -34192026 + RMER15-int LTR ERVL 4279 4563 -436 1 1249 425 244 117 39 chr12 87065522 87065650 -34191880 + RMER15-int LTR ERVL 4633 4770 -229 1 1249 2300 169 113 21 chr12 87065663 87066195 -34191335 - RLTR31A_Mm LTR ERVK -3 581 1 1 1249 397 250 93 29 chr12 87066270 87066410 -34191120 + Lx7 LINE L1 6916 7064 -632 1 1249 324 0 0 0 chr12 87066477 87066513 -34191017 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1249 401 299 79 53 chr12 87066519 87066671 -34190859 + RMER15 LTR ERVL 335 490 -85 1 1249 1346 89 28 0 chr12 87067448 87067628 -34189902 + B2_Mm2 SINE B2 2 186 -9 1 1249 1515 43 5 26 chr12 87068374 87068566 -34188964 + B2_Mm2 SINE B2 2 189 -6 1 1249 1550 129 216 27 chr12 87068925 87069094 -34188436 + RMER10B LTR ERVL 2 192 -206 1 1249 414 0 0 0 chr12 87069094 87069140 -34188390 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1249 423 0 0 0 chr12 87069140 87069186 -34188344 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1249 1550 129 216 27 chr12 87069186 87069349 -34188181 + RMER10B LTR ERVL 193 396 -2 1 1249 1146 178 0 61 chr12 87069696 87069924 -34187606 - RMER10B LTR ERVL -184 214 1 1 1249 425 234 96 0 chr12 87070040 87070134 -34187396 - ORR1D2 LTR MaLR 0 370 268 1 1249 222 277 139 25 chr12 87070325 87070447 -34187083 - MIRb SINE MIR -107 161 26 1 1249 8072 48 13 1 chr12 87071305 87072273 -34185257 + L1_Mus1 LINE L1 5588 6567 0 1 1249 189 107 0 0 chr12 87072276 87072304 -34185226 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1249 1878 174 161 87 chr12 87072340 87072494 -34185036 - RMER16 LTR ERVK 0 533 391 1 1249 1138 72 0 0 chr12 87072494 87072632 -34184898 - B1_Mus1 SINE Alu -10 138 1 1 1249 1878 174 161 87 chr12 87072632 87072973 -34184557 - RMER16 LTR ERVK -143 390 1 1 1249 996 184 59 6 chr12 87073146 87073473 -34184057 + MTC LTR MaLR 6 421 0 1 1249 569 248 19 61 chr12 87073473 87073698 -34183832 + MTC-int LTR MaLR 1 206 -1303 1 1249 615 155 0 0 chr12 87073738 87073835 -34183695 - B1_Mur3 SINE Alu -13 136 40 1 1249 655 176 24 40 chr12 87073838 87074087 -34183443 + (TCTCTG)n Simple_repeat Simple_repeat 1 244 0 1 1249 677 144 0 11 chr12 87074126 87074301 -34183229 + CT-rich Low_complexity Low_complexity 4 176 0 1 1249 319 73 0 113 chr12 87074304 87074366 -34183164 - PB1D9 SINE Alu -61 59 5 2 1249 599 215 126 0 chr12 87074379 87074514 -34183016 + MTC-int LTR MaLR 226 377 -881 1 1249 732 88 193 0 chr12 87074510 87074624 -34182906 + B2_Mm2 SINE B2 8 143 -52 2 1249 5371 86 32 33 chr12 87074625 87075433 -34182097 + RLTR13C2 LTR ERVK 1 1033 0 2 1249 3600 153 81 18 chr12 87075477 87076134 -34181396 + MTC-int LTR MaLR 381 1078 -180 1 1249 631 212 18 0 chr12 87076135 87076248 -34181282 + B1_Mur3 SINE Alu 34 148 -1 2 1249 306 0 0 0 chr12 87076253 87076287 -34181243 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2 1249 441 113 10 245 chr12 87076292 87076339 -34181191 + MTC-int LTR MaLR 1044 1073 -185 1 1249 805 170 49 7 chr12 87076339 87076481 -34181049 - B1_Mur4 SINE Alu 0 150 3 2 1249 441 113 10 245 chr12 87076481 87076572 -34180958 + MTC-int LTR MaLR 1074 1158 -100 1 1249 1210 41 0 7 chr12 87076572 87076719 -34180811 + B1_Mm SINE Alu 2 147 0 2 1249 441 113 10 245 chr12 87076719 87076779 -34180751 + MTC-int LTR MaLR 1159 1196 -62 1 1249 661 219 130 6 chr12 87076756 87076872 -34180658 + MT2A LTR ERVL 353 489 -44 2 1249 228 67 0 0 chr12 87076872 87076902 -34180628 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 2 1249 661 219 130 6 chr12 87076902 87076946 -34180584 + MT2A LTR ERVL 490 533 0 2 1249 198 0 0 0 chr12 87077481 87077503 -34180027 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1249 213 39 0 0 chr12 87077579 87077605 -34179925 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1249 1222 48 0 0 chr12 87077605 87077751 -34179779 - B1_Mus2 SINE Alu 0 147 2 2 1249 566 186 100 17 chr12 87078106 87078226 -34179304 + ID_B1 SINE B4 87 216 -8 2 1249 201 161 0 0 chr12 87078228 87078259 -34179271 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 2 1249 893 119 22 0 chr12 87078270 87078404 -34179126 - B1_Mus2 SINE Alu -10 137 1 2 1249 1279 102 0 41 chr12 87078539 87078734 -34178796 - B2_Mm2 SINE B2 -7 188 2 2 1249 1888 139 88 70 chr12 87078755 87079142 -34178388 + ORR1B1 LTR MaLR 1 394 0 2 1249 527 43 14 0 chr12 87079432 87079502 -34178028 + (TC)n Simple_repeat Simple_repeat 1 71 0 2 1249 216 86 0 0 chr12 87079593 87079628 -34177902 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1249 288 0 0 0 chr12 87080177 87080209 -34177321 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2 1249 1241 54 0 0 chr12 87081021 87081168 -34176362 + B1_Mm SINE Alu 1 147 0 2 1249 246 62 0 0 chr12 87081168 87081200 -34176330 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 2 1249 772 225 112 7 chr12 87081806 87081826 -34175704 - B4A SINE B4 -2 290 271 2 1249 516 32 0 0 chr12 87081826 87081888 -34175642 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1249 772 225 112 7 chr12 87081888 87082019 -34175511 - B4A SINE B4 -22 270 123 2 1249 884 152 15 0 chr12 87082067 87082199 -34175331 + B1_Mur4 SINE Alu 11 144 -6 2 1249 243 0 0 0 chr12 87082205 87082232 -34175298 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 2 1249 824 168 117 39 chr12 87082638 87082902 -34174628 - RMER16 LTR ERVK 0 533 211 2 1249 290 115 61 76 chr12 87082875 87082941 -34174589 - RMER16 LTR ERVK -467 66 2 2 1249 476 256 87 58 chr12 87082983 87083019 -34174511 - B3 SINE B2 -3 213 172 2 1249 573 28 0 0 chr12 87083019 87083090 -34174440 + (TATG)n Simple_repeat Simple_repeat 4 74 0 2 1249 476 256 87 58 chr12 87083090 87083260 -34174270 - B3 SINE B2 -45 171 1 2 1249 234 0 0 0 chr12 87083691 87083717 -34173813 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1249 1210 43 0 0 chr12 87083870 87084010 -34173520 + B1_Mus2 SINE Alu 2 141 -6 2 1249 891 173 0 0 chr12 87084179 87084318 -34173212 - B1_Mus2 SINE Alu -8 139 1 2 1249 1511 219 101 11 chr12 87084901 87085128 -34172402 + RLTR14 LTR ERV1 5 241 -141 2 1249 1642 36 0 0 chr12 87085128 87085320 -34172210 + B2_Mm1a SINE B2 1 192 -1 2 1249 1511 219 101 11 chr12 87085320 87085439 -34172091 + RLTR14 LTR ERV1 242 382 0 2 1249 535 250 56 88 chr12 87085489 87085704 -34171826 - B3A SINE B2 -1 215 8 2 1249 405 236 32 106 chr12 87085802 87085925 -34171605 - MER5A1 DNA MER1_type 0 166 53 2 1249 312 211 188 10 chr12 87085936 87086032 -34171498 + PB1D10 SINE Alu 4 116 -1 2 1249 182 150 25 0 chr12 87086271 87086311 -34171219 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1249 1268 41 0 0 chr12 87086462 87086609 -34170921 - B1_Mus2 SINE Alu 0 147 1 2 1249 251 294 97 44 chr12 87086620 87086734 -34170796 - MIRc SINE MIR -102 166 47 2 1249 213 36 0 0 chr12 87089537 87089551 -34167979 + (A)n Simple_repeat Simple_repeat 1 14 0 2 1249 1125 76 28 0 chr12 87089551 87089695 -34167835 + B1_Mus1 SINE Alu 1 148 0 2 1249 213 36 0 0 chr12 87089695 87089708 -34167822 + (A)n Simple_repeat Simple_repeat 1 13 0 2 1249 1003 142 0 7 chr12 87089855 87090004 -34167526 + B1_Mur4 SINE Alu 1 148 -2 2 1249 719 299 5 35 chr12 87090073 87090274 -34167256 + B3A SINE B2 2 196 -2 2 1249 652 195 89 0 chr12 87090298 87090421 -34167109 + ID_B1 SINE B4 82 215 -9 2 1249 228 67 0 0 chr12 87090424 87090454 -34167076 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1249 180 92 76 38 chr12 87090479 87090558 -34166972 + T-rich Low_complexity Low_complexity 4 85 0 2 1249 1042 52 15 0 chr12 87090558 87090693 -34166837 - B1_Mus1 SINE Alu 0 148 12 2 1249 521 229 43 136 chr12 87090560 87090707 -34166823 - B4 SINE B4 -69 223 89 2 1249 249 33 0 0 chr12 87090707 87090737 -34166793 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1249 417 162 43 103 chr12 87090737 87090854 -34166676 - PB1D9 SINE Alu -10 110 1 2 1249 521 229 43 136 chr12 87090854 87090867 -34166663 - B4 SINE B4 -204 88 78 2 1249 364 226 0 125 chr12 87091027 87091123 -34166407 + RSINE1 SINE B4 1 84 -81 2 1249 2531 143 90 15 chr12 87091119 87091172 -34166358 - RLTR11A LTR ERVK -16 512 448 2 1249 840 71 0 0 chr12 87091172 87091284 -34166246 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 1249 2531 143 90 15 chr12 87091284 87091706 -34165824 - RLTR11A LTR ERVK -81 447 2 2 1249 25 0 0 0 chr12 87091933 87091958 -34165572 + AT_rich Low_complexity Low_complexity 1 25 0 2 1249 417 308 116 0 chr12 87091958 87092104 -34165426 - RSINE1 SINE B4 0 165 3 2 1249 195 69 0 0 chr12 87092112 87092141 -34165389 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1249 1161 30 15 0 chr12 87092141 87092276 -34165254 - B1_Mm SINE Alu -9 138 2 2 1249 313 276 13 0 chr12 87092443 87092519 -34165011 + ID4_ SINE ID 1 77 -6 2 1249 517 219 37 2 chr12 87092624 87092743 -34164787 - B1F2 SINE Alu -22 126 7 2 1249 347 315 62 23 chr12 87092636 87092766 -34164764 - B4 SINE B4 -89 203 69 2 1249 1141 70 7 0 chr12 87092905 87093048 -34164482 + B1_Mus1 SINE Alu 4 147 -1 2 1249 389 296 52 72 chr12 87093070 87093263 -34164267 - MIRb SINE MIR -46 222 34 2 1249 885 161 0 0 chr12 87093338 87093475 -34164055 + B1_Mus1 SINE Alu 5 141 -7 2 1249 203 241 0 0 chr12 87093479 87093533 -34163997 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 1249 378 0 0 0 chr12 87093571 87093613 -34163917 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1249 2306 166 10 27 chr12 87093654 87094068 -34163462 - MTB_Mm LTR MaLR 0 407 1 2 1249 671 200 42 0 chr12 87094094 87094214 -34163316 - B1_Mur1 SINE Alu -2 147 23 2 1249 1643 214 52 26 chr12 87094462 87094687 -34162843 + RMER10A LTR ERVL 5 229 -213 2 1249 573 55 0 0 chr12 87094687 87094760 -34162770 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 2 1249 1643 214 52 26 chr12 87094760 87094954 -34162576 + RMER10A LTR ERVL 230 436 -6 2 1249 180 0 0 0 chr12 87094954 87094974 -34162556 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1249 430 273 43 18 chr12 87095264 87095428 -34162102 - MER33 DNA MER1_type -24 300 133 2 1249 276 257 13 13 chr12 87095447 87095522 -34162008 - ID4 SINE ID -5 78 4 2 1249 1234 41 0 7 chr12 87096187 87096334 -34161196 - B1_Mm SINE Alu 0 147 2 2 1249 284 312 151 0 chr12 87096420 87096513 -34161017 - PB1D10 SINE Alu -10 107 1 2 1249 344 198 89 87 chr12 87096639 87096777 -34160753 - L1MB4 LINE L1 -152 6022 5883 2 1249 1017 160 69 40 chr12 87096788 87096990 -34160540 - B3 SINE B2 0 216 9 2 1249 235 309 93 93 chr12 87096892 87097031 -34160499 - Charlie8 DNA MER1_type -2223 205 67 2 1249 212 31 0 59 chr12 87097055 87097089 -34160441 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2 1249 247 282 14 27 chr12 87097100 87097173 -34160357 - PB1D10 SINE Alu -4 113 42 2 1249 378 0 0 0 chr12 87097208 87097250 -34160280 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1249 683 7 141 20 chr12 87098066 87098215 -34159315 + (TCCTG)n Simple_repeat Simple_repeat 3 169 0 2 1249 237 298 51 32 chr12 87098316 87098472 -34159058 + L1MB4 LINE L1 33 191 -6416 2 1249 1279 27 0 0 chr12 87098648 87098795 -34158735 + B1_Mm SINE Alu 1 147 0 2 1249 195 42 0 0 chr12 87098795 87098819 -34158711 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1249 324 312 9 0 chr12 87099016 87099125 -34158405 + L1MB4 LINE L1 5048 5157 -1590 2 1249 191 36 36 0 chr12 87099365 87099393 -34158137 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1249 855 229 13 0 chr12 87099415 87099572 -34157958 - B3A SINE B2 -38 160 2 2 1249 234 0 0 0 chr12 87099592 87099618 -34157912 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1249 536 254 38 45 chr12 87099643 87099775 -34157755 - RSINE1 SINE B4 -34 131 1 2 1249 304 262 178 23 chr12 87099823 87099952 -34157578 - LTR31 LTR ERV1 -307 312 164 2 1249 334 301 177 47 chr12 87100057 87100419 -34157111 - MER21B LTR ERV1 -130 733 325 2 1249 257 321 12 12 chr12 87100646 87100731 -34156799 - MER21B LTR ERV1 -763 100 16 2 1249 363 249 153 51 chr12 87100741 87100957 -34156573 + L1MB3 LINE L1 5902 6139 -44 2 1249 333 256 0 60 chr12 87100963 87101046 -34156484 - ID4_ SINE ID 0 83 6 2 1249 239 0 0 31 chr12 87101149 87101181 -34156349 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1249 811 179 35 0 chr12 87101202 87101347 -34156183 - B1_Mur4 SINE Alu 0 150 1 2 1249 1258 151 18 31 chr12 87101750 87101976 -34155554 - URR1A DNA MER1_type -3 223 1 2 1249 180 0 0 0 chr12 87102120 87102140 -34155390 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1249 1299 27 0 0 chr12 87102140 87102287 -34155243 - B1_Mm SINE Alu 0 147 1 2 1249 948 285 81 24 chr12 87102778 87103148 -34154382 - RMER5 LTR ERV1 -31 503 113 2 1249 1224 61 0 0 chr12 87103618 87103766 -34153764 - B1_Mus1 SINE Alu 0 148 1 3 1249 441 118 15 0 chr12 87103860 87103928 -34153602 + B1_Mus1 SINE Alu 11 79 -69 3 1249 297 264 83 0 chr12 87104454 87104526 -34153004 + ID4_ SINE ID 1 78 -5 3 1249 580 151 85 0 chr12 87104710 87104816 -34152714 - B3A SINE B2 -60 138 24 3 1249 805 170 0 56 chr12 87104851 87104994 -34152536 - B1_Mus1 SINE Alu -13 135 1 3 1249 711 222 14 0 chr12 87106004 87106148 -34151382 + B1F SINE Alu 4 149 0 3 1249 324 0 0 0 chr12 87106492 87106528 -34151002 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1249 731 142 80 0 chr12 87106528 87106641 -34150889 - B1_Mur4 SINE Alu -9 141 20 3 1249 486 0 0 0 chr12 87106642 87106696 -34150834 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1249 1117 75 0 13 chr12 87106834 87106983 -34150547 - B1_Mus2 SINE Alu 0 147 1 3 1249 306 0 0 0 chr12 87107051 87107085 -34150445 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1249 194 364 99 42 chr12 87107725 87107917 -34149613 + MIRb SINE MIR 29 231 -37 3 1249 474 18 0 0 chr12 87108084 87108139 -34149391 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1249 987 73 43 22 chr12 87108533 87108672 -34148858 - B1_Mur4 SINE Alu -8 142 1 3 1249 1534 158 132 27 chr12 87109753 87110085 -34147445 - ORR1B2 LTR MaLR 0 367 1 3 1249 2717 77 50 0 chr12 87110430 87110792 -34146738 - RLTR14 LTR ERV1 0 382 3 3 1249 871 48 164 16 chr12 87110867 87110995 -34146535 - B1_Mm SINE Alu 0 147 1 3 1249 193 383 86 9 chr12 87111225 87111341 -34146189 - L2b LINE L2 -5 3370 3246 3 1249 332 280 111 9 chr12 87111374 87111482 -34146048 + RMER30 DNA MER1_type 67 185 -17 3 1249 245 203 0 92 chr12 87111861 87111926 -34145604 + Tigger7 DNA MER2_type 1603 1661 -830 3 1249 701 239 20 61 chr12 87111879 87112026 -34145504 + RSINE1 SINE B4 8 148 -17 3 1249 297 0 0 0 chr12 87112034 87112067 -34145463 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1249 198 0 0 0 chr12 87112099 87112121 -34145409 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 3 1249 897 256 106 26 chr12 87112644 87112972 -34144558 - MTE2a LTR MaLR -49 370 18 3 1249 270 310 28 0 chr12 87113118 87113189 -34144341 + PB1D10 SINE Alu 18 90 -27 3 1249 588 253 56 56 chr12 87113212 87113392 -34144138 + B4 SINE B4 44 223 -69 3 1249 379 184 367 0 chr12 87113394 87113503 -34144027 + B1F2 SINE Alu 1 149 0 3 1249 475 276 143 45 chr12 87113530 87113663 -34143867 + RSINE1 SINE B4 6 151 -14 3 1249 276 102 0 0 chr12 87113664 87113713 -34143817 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 3 1249 237 305 181 58 chr12 87113872 87114060 -34143470 + MIRb SINE MIR 31 241 -27 3 1249 482 244 42 8 chr12 87114109 87114229 -34143301 - B1F SINE Alu -24 125 2 3 1249 253 280 49 70 chr12 87114264 87114406 -34143124 + MIRc SINE MIR 26 164 -104 3 1249 1147 133 98 51 chr12 87114518 87114656 -34142874 - URR1A DNA MER1_type -1 225 94 3 1249 2520 131 210 28 chr12 87114656 87115236 -34142294 + RMER6C LTR ERVK 4 689 -1 3 1249 1147 133 98 51 chr12 87115236 87115311 -34142219 - URR1A DNA MER1_type -133 93 2 3 1249 1087 158 44 44 chr12 87115814 87116132 -34141398 - RMER17C LTR ERVK -9 401 84 3 1249 236 292 0 0 chr12 87116132 87116180 -34141350 + G-rich Low_complexity Low_complexity 1 48 0 3 1249 878 153 15 73 chr12 87116180 87116441 -34141089 - RMER17C LTR ERVK -164 246 1 3 1249 426 314 115 33 chr12 87116688 87116810 -34140720 - RSINE1 SINE B4 -31 134 3 3 1249 685 249 82 16 chr12 87117291 87117475 -34140055 + B3A SINE B2 3 198 0 3 1249 321 47 0 0 chr12 87117515 87117558 -34139972 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1249 840 143 0 22 chr12 87118059 87118221 -34139309 - B1_Mur4 SINE Alu -1 148 3 3 1249 297 109 0 0 chr12 87118396 87118451 -34139079 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1249 2338 177 80 8 chr12 87118686 87119164 -34138366 - RLTR28 LTR ERVL 0 524 13 3 1249 250 224 14 95 chr12 87119168 87119242 -34138288 - ID4 SINE ID -4 79 12 3 1249 21 0 0 0 chr12 87119575 87119596 -34137934 + AT_rich Low_complexity Low_complexity 1 21 0 3 1249 583 209 131 8 chr12 87119749 87119879 -34137651 + B1_Mus2 SINE Alu 2 147 0 3 1249 21 0 0 0 chr12 87119915 87119936 -34137594 + GC_rich Low_complexity Low_complexity 1 21 0 3 1249 216 200 0 0 chr12 87120438 87120483 -34137047 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 3 1249 1289 148 77 0 chr12 87121530 87121739 -34135791 - URR1A DNA MER1_type -1 225 1 3 1249 44 0 0 0 chr12 87121860 87121904 -34135626 + AT_rich Low_complexity Low_complexity 1 44 0 3 1249 282 125 0 0 chr12 87121961 87122009 -34135521 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1249 709 242 50 19 chr12 87122009 87122169 -34135361 - B3A SINE B2 -33 165 1 3 1249 266 0 29 0 chr12 87123025 87123059 -34134471 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1249 944 257 77 66 chr12 87123526 87123813 -34133717 - B4A SINE B4 0 292 3 3 1249 430 296 26 58 chr12 87124358 87124512 -34133018 + ID_B1 SINE B4 50 198 -26 3 1249 731 154 0 116 chr12 87124396 87124543 -34132987 + B1_Mur4 SINE Alu 10 139 -11 3 1249 362 333 55 25 chr12 87124587 87124750 -34132780 - MIR SINE MIR -61 201 34 3 1249 26 0 0 0 chr12 87124758 87124784 -34132746 + AT_rich Low_complexity Low_complexity 1 26 0 3 1249 495 215 13 0 chr12 87125041 87125145 -34132385 + PB1D10 SINE Alu 13 117 0 3 1249 1492 58 11 0 chr12 87125489 87125680 -34131850 - B2_Mm1t SINE B2 0 193 1 3 1249 283 253 23 11 chr12 87126742 87126830 -34130700 + BC1_Mm scRNA scRNA 14 102 -50 3 1249 2757 94 36 19 chr12 87127358 87127779 -34129751 - Lx4A LINE L1 -1 7057 6630 3 1249 203 179 26 0 chr12 87127835 87127874 -34129656 + (TGAG)n Simple_repeat Simple_repeat 2 41 0 3 1249 781 168 22 7 chr12 87128129 87128267 -34129263 + B1_Mur4 SINE Alu 1 140 -10 3 1249 195 42 0 0 chr12 87128267 87128291 -34129239 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1249 499 312 30 24 chr12 87128586 87128750 -34128780 - MIRb SINE MIR -77 191 27 3 1249 351 200 42 53 chr12 87128750 87128845 -34128685 - PB1 SINE Alu -51 98 5 3 1249 898 194 86 10 chr12 87128926 87129124 -34128406 + B3 SINE B2 3 215 -1 3 1249 1137 44 7 0 chr12 87129140 87129277 -34128253 + B1_Mus1 SINE Alu 1 138 -10 3 1249 1161 189 13 47 chr12 87129570 87129702 -34127828 - URR1B DNA MER1_type 0 225 96 3 1249 1403 80 11 0 chr12 87129702 87129890 -34127640 + B2_Mm1a SINE B2 1 190 -3 3 1249 1161 189 13 47 chr12 87129890 87129990 -34127540 - URR1B DNA MER1_type -130 95 1 3 1249 414 0 0 0 chr12 87130371 87130417 -34127113 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 3 1249 1273 65 6 6 chr12 87130417 87130586 -34126944 - B2_Mm2 SINE B2 -26 169 1 3 1249 699 284 52 5 chr12 87130740 87130952 -34126578 - ID_B1 SINE B4 -2 222 1 3 1249 319 172 0 0 chr12 87131079 87131137 -34126393 + L1M4 LINE L1 137 194 -6348 3 1249 953 158 7 0 chr12 87131485 87131631 -34125899 - B1_Mur4 SINE Alu 0 150 4 3 1249 25 0 0 0 chr12 87131636 87131661 -34125869 + AT_rich Low_complexity Low_complexity 1 25 0 3 1249 1130 212 5 0 chr12 87131671 87131874 -34125656 + B3 SINE B2 3 206 -10 3 1249 1330 70 12 0 chr12 87131899 87132070 -34125460 - B2_Mm1a SINE B2 -19 174 2 3 1249 953 137 20 7 chr12 87132072 87132219 -34125311 - B1_Mur3 SINE Alu 0 149 1 3 1249 371 200 243 19 chr12 87132319 87132426 -34125104 - B3 SINE B2 0 216 86 3 1249 392 125 28 0 chr12 87132973 87133045 -34124485 + C-rich Low_complexity Low_complexity 1 74 0 3 1249 422 286 26 18 chr12 87133751 87133865 -34123665 - MER5A DNA MER1_type 0 189 75 3 1249 1187 55 0 20 chr12 87134364 87134378 -34123152 - B1_Mus2 SINE Alu 0 147 136 3 1249 212 0 36 0 chr12 87134378 87134406 -34123124 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 3 1249 1187 55 0 20 chr12 87134406 87134540 -34122990 - B1_Mus2 SINE Alu -12 135 2 3 1249 677 243 21 7 chr12 87134591 87134736 -34122794 - RSINE1 SINE B4 -16 149 3 3 1249 572 261 152 37 chr12 87135046 87135289 -34122241 - LTR87 LTR ERVL? -32 592 322 3 1249 495 0 0 0 chr12 87135536 87135591 -34121939 + (CAA)n Simple_repeat Simple_repeat 2 56 0 3 1249 322 207 103 12 chr12 87135654 87135751 -34121779 - PB1D10 SINE Alu -1 119 9 3 1249 226 224 0 20 chr12 87135793 87135843 -34121687 + MIRc SINE MIR 113 161 -107 3 1249 233 217 0 0 chr12 87135900 87135946 -34121584 + (CAT)n Simple_repeat Simple_repeat 1 46 0 3 1249 195 316 24 73 chr12 87135985 87136067 -34121463 + MIR SINE MIR 53 130 -78 3 1249 189 195 0 0 chr12 87136080 87136121 -34121409 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1249 269 297 95 0 chr12 87136134 87136208 -34121322 - B4A SINE B4 0 292 212 3 1249 695 244 91 30 chr12 87136310 87136542 -34120988 - B4A SINE B4 -46 246 1 3 1249 249 135 0 0 chr12 87137466 87137518 -34120012 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1249 608 219 9 0 chr12 87137518 87137632 -34119898 - PB1D9 SINE Alu -5 115 1 3 1249 21 0 0 0 chr12 87137651 87137672 -34119858 + AT_rich Low_complexity Low_complexity 1 21 0 3 1249 860 238 64 5 chr12 87137685 87137888 -34119642 + B3 SINE B2 2 216 0 3 1249 1007 221 14 40 chr12 87138015 87138237 -34119293 - B3 SINE B2 0 216 1 3 1249 216 0 0 0 chr12 87138250 87138274 -34119256 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 4 1249 213 39 0 0 chr12 87138274 87138299 -34119231 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 1249 225 112 0 92 chr12 87138299 87138348 -34119182 - B1_Mur2 SINE Alu -13 136 92 4 1249 1163 68 0 20 chr12 87138371 87138521 -34119009 + B1_Mus1 SINE Alu 1 147 -1 4 1249 220 148 16 47 chr12 87138784 87138848 -34118682 + (TTATA)n Simple_repeat Simple_repeat 2 63 0 4 1249 258 136 0 43 chr12 87138854 87138900 -34118630 + RMER30 DNA MER1_type 8 51 -151 4 1249 749 215 7 0 chr12 87139087 87139231 -34118299 + B1_Mur1 SINE Alu 5 149 0 4 1249 220 375 12 0 chr12 87139682 87139762 -34117768 + MIRb SINE MIR 109 189 -79 4 1249 439 313 27 112 chr12 87140209 87140298 -34117232 + B4 SINE B4 2 82 -210 4 1249 3426 53 0 2 chr12 87140298 87140716 -34116814 - L1_Mus1 LINE L1 0 6567 6151 4 1249 439 313 27 112 chr12 87140716 87140813 -34116717 + B4 SINE B4 83 172 -120 4 1249 232 200 25 0 chr12 87140882 87140922 -34116608 - ID4 SINE ID -10 73 33 4 1249 218 274 161 0 chr12 87140922 87140944 -34116586 - ID SINE ID -150 74 3 4 1249 205 51 0 49 chr12 87141633 87141674 -34115856 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1249 887 159 0 14 chr12 87142038 87142178 -34115352 - B1_Mus2 SINE Alu -9 138 1 4 1249 1382 151 120 67 chr12 87142314 87142425 -34115105 - RLTR19A LTR ERVK 0 496 380 4 1249 1221 62 0 0 chr12 87142425 87142569 -34114961 + B1_Mus2 SINE Alu 2 145 -2 4 1249 191 36 36 0 chr12 87142569 87142597 -34114933 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1249 1382 151 120 67 chr12 87142597 87142768 -34114762 - RLTR19A LTR ERVK -117 379 199 4 1249 956 157 0 0 chr12 87143288 87143435 -34114095 + B1_Mus1 SINE Alu 1 147 -1 4 1249 987 155 7 10 chr12 87143437 87143724 -34113806 + GA-rich Low_complexity Low_complexity 1 285 0 4 1249 508 190 8 8 chr12 87143724 87143739 -34113791 + polypurine Low_complexity Low_complexity 108 122 0 4 1249 776 191 0 47 chr12 87144322 87144470 -34113060 + B1_Mur2 SINE Alu 9 149 0 4 1249 246 281 90 14 chr12 87144610 87144707 -34112823 + MIRb SINE MIR 115 221 -47 4 1249 224 200 42 84 chr12 87145849 87145920 -34111610 + MIR3 SINE MIR 110 177 -31 4 1249 1040 223 49 5 chr12 87146426 87146629 -34110901 - B3 SINE B2 0 216 5 4 1249 324 0 0 0 chr12 87147182 87147218 -34110312 + (CATA)n Simple_repeat Simple_repeat 2 37 0 4 1249 397 364 35 32 chr12 87147366 87147650 -34109880 - B4A SINE B4 -5 287 3 4 1249 527 238 0 0 chr12 87147657 87147758 -34109772 - B1F1 SINE Alu -27 122 22 4 1249 295 311 25 0 chr12 87147776 87147895 -34109635 + CT-rich Low_complexity Low_complexity 4 125 0 4 1249 1057 181 146 103 chr12 87147895 87148216 -34109314 - RMER16 LTR ERVK -86 447 113 4 1249 2343 83 12 36 chr12 87148259 87148596 -34108934 - RMER16-int LTR ERVK -3 5403 5075 4 1249 1006 32 16 0 chr12 87148606 87148732 -34108798 - B1_Mus2 SINE Alu 0 147 20 4 1249 2444 66 47 0 chr12 87148737 87149057 -34108473 - RMER16-int LTR ERVK -360 5046 4712 4 1249 4160 119 16 22 chr12 87149058 87149729 -34107801 + RMER16-int LTR ERVK 4044 4710 -696 4 1249 2180 198 61 93 chr12 87149941 87150469 -34107061 - RLTR18B LTR ERVK -1 511 1 4 1249 207 0 0 0 chr12 87151281 87151304 -34106226 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1249 1207 56 0 0 chr12 87151309 87151451 -34106079 - B1_Mus2 SINE Alu -5 142 1 4 1249 1244 49 0 0 chr12 87152473 87152617 -34104913 - B1_Mus2 SINE Alu 0 147 4 4 1249 195 42 0 0 chr12 87152998 87153022 -34104508 + (GGA)n Simple_repeat Simple_repeat 3 26 0 4 1249 330 282 64 71 chr12 87155911 87155967 -34101563 - ID_B1 SINE B4 -4 220 84 4 1249 531 136 0 12 chr12 87155967 87156049 -34101481 - B1_Mur3 SINE Alu -66 83 3 4 1249 225 200 40 0 chr12 87156013 87156063 -34101467 - MT2B LTR ERVL -306 295 244 4 1249 361 293 140 23 chr12 87156714 87156885 -34100645 + L1ME3B LINE L1 6050 6240 0 4 1249 532 106 0 86 chr12 87157544 87157637 -34099893 - B1_Mm SINE Alu 0 147 63 4 1249 962 81 78 35 chr12 87158003 87158144 -34099386 - B1_Mus2 SINE Alu 0 147 1 4 1249 393 211 13 6 chr12 87158263 87158353 -34099177 - ID4 SINE ID -58 94 7 4 1249 276 99 61 40 chr12 87158490 87158638 -34098892 + (TG)n Simple_repeat Simple_repeat 1 151 0 4 1249 191 104 67 42 chr12 87158651 87158771 -34098759 + (TG)n Simple_repeat Simple_repeat 1 123 0 4 1249 206 191 128 0 chr12 87159051 87159098 -34098432 - MIRc SINE MIR -86 182 130 4 1249 22 0 0 0 chr12 87159230 87159252 -34098278 + AT_rich Low_complexity Low_complexity 1 22 0 4 1249 180 0 0 0 chr12 87159658 87159678 -34097852 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1249 490 227 31 63 chr12 87159697 87159824 -34097706 - RMER10B LTR ERVL -56 342 220 4 1249 252 0 0 0 chr12 87159843 87159871 -34097659 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1249 252 59 0 0 chr12 87159871 87159904 -34097626 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1249 342 301 62 56 chr12 87161005 87161167 -34096363 + MER5B DNA MER1_type 1 163 -15 4 1249 226 262 15 76 chr12 87161269 87161335 -34096195 + tRNA-Ala-GCY_ tRNA tRNA 8 69 -6 4 1249 1178 75 0 0 chr12 87161530 87161677 -34095853 - B1_Mus1 SINE Alu 0 148 2 4 1249 1226 126 91 10 chr12 87162510 87162719 -34094811 - URR1A DNA MER1_type 0 226 1 4 1250 334 314 9 0 chr12 87162912 87163017 -34094513 - PB1D10 SINE Alu -7 110 5 4 1250 435 260 93 62 chr12 87163957 87164150 -34093380 - MIR SINE MIR -8 260 55 4 1250 795 158 57 7 chr12 87164221 87164361 -34093169 - B1_Mur1 SINE Alu -1 148 2 4 1250 381 241 100 6 chr12 87165061 87165222 -34092308 + MIRb SINE MIR 47 229 -39 4 1250 720 106 106 0 chr12 87167097 87167220 -34090310 + B1_Mus2 SINE Alu 12 147 0 4 1250 282 56 0 0 chr12 87167882 87167918 -34089612 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1250 622 249 35 6 chr12 87167952 87168122 -34089408 - B3A SINE B2 -23 175 1 4 1250 256 299 13 13 chr12 87168137 87168215 -34089315 - RSINE1 SINE B4 -85 80 3 4 1250 727 201 30 0 chr12 87168233 87168367 -34089163 - RSINE1 SINE B4 -27 138 1 4 1250 23 0 0 0 chr12 87168741 87168764 -34088766 + AT_rich Low_complexity Low_complexity 1 23 0 4 1250 204 205 0 0 chr12 87169020 87169059 -34088471 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1250 477 210 10 10 chr12 87169075 87169176 -34088354 - B1F SINE Alu -32 117 17 4 1250 245 343 19 10 chr12 87169246 87169349 -34088181 + MIRc SINE MIR 163 266 -2 4 1250 1173 226 113 11 chr12 87169873 87170236 -34087294 - MTD LTR MaLR -8 411 12 4 1250 1109 237 5 0 chr12 87170919 87171134 -34086396 + B3 SINE B2 1 216 0 4 1250 1254 34 0 0 chr12 87171379 87171525 -34086005 - B1_Mus2 SINE Alu -1 146 1 4 1250 1564 198 78 13 chr12 87171904 87172277 -34085253 + MTD LTR MaLR 16 412 -7 4 1250 203 293 80 10 chr12 87172601 87172701 -34084829 + MIRc SINE MIR 19 125 -143 4 1250 491 273 179 38 chr12 87173150 87173359 -34084171 - L1MB7 LINE L1 -20 6160 5921 4 1250 951 128 243 6 chr12 87173359 87173540 -34083990 + URR1B DNA MER1_type 1 224 -1 4 1250 491 238 206 29 chr12 87173540 87173685 -34083845 - L1MB7 LINE L1 -263 5921 5737 4 1250 444 264 61 0 chr12 87173694 87173857 -34083673 - L1M4 LINE L1 -733 5450 5278 4 1250 774 34 8 25 chr12 87173881 87174001 -34083529 - B1_Mus2 SINE Alu 0 147 30 4 1250 444 249 225 17 chr12 87174014 87174374 -34083156 - L1M4 LINE L1 -895 5251 4817 4 1250 660 135 443 7 chr12 87174385 87174534 -34082996 - B3 SINE B2 0 216 3 4 1250 1105 211 9 0 chr12 87174578 87174791 -34082739 - B3 SINE B2 0 216 2 4 1250 803 156 0 75 chr12 87174874 87174899 -34082631 + B1_Mur3 SINE Alu 2 24 -125 4 1250 3512 25 2 0 chr12 87174899 87175294 -34082236 + MTA_Mm LTR MaLR 1 396 0 4 1250 803 156 0 75 chr12 87175294 87175428 -34082102 + B1_Mur3 SINE Alu 25 149 0 4 1250 302 326 11 0 chr12 87175431 87175523 -34082007 - ID_B1 SINE B4 -13 211 119 4 1250 222 246 46 229 chr12 87175523 87175539 -34081991 - B1F SINE Alu -13 136 46 4 1250 783 271 25 0 chr12 87175539 87175742 -34081788 - B3 SINE B2 -7 209 2 4 1250 222 246 46 229 chr12 87175742 87175786 -34081744 - B1F SINE Alu -104 45 12 4 1250 232 195 96 72 chr12 87175796 87175879 -34081651 - L1M4 LINE L1 -1401 4745 4661 4 1250 224 279 256 0 chr12 87176056 87176185 -34081345 + MIR SINE MIR 83 244 -18 4 1250 263 219 82 0 chr12 87176707 87176806 -34080724 + PB1D10 SINE Alu 10 119 -1 4 1250 846 166 14 0 chr12 87176960 87177099 -34080431 - B1_Mur4 SINE Alu -1 149 9 4 1250 458 291 0 47 chr12 87176966 87177114 -34080416 - ID_B1 SINE B4 -7 217 77 4 1250 642 165 110 30 chr12 87177768 87177954 -34079576 - B3 SINE B2 -7 188 1 4 1250 248 188 42 28 chr12 87178056 87178127 -34079403 - ID4_ SINE ID -11 72 1 4 1250 345 267 19 9 chr12 87178703 87178809 -34078721 - PB1D10 SINE Alu -1 116 10 4 1250 265 309 11 11 chr12 87178729 87178824 -34078706 - ID_B1 SINE B4 -54 170 76 4 1250 719 244 33 24 chr12 87178829 87179039 -34078491 - B3 SINE B2 0 216 5 4 1250 369 303 68 0 chr12 87179407 87179539 -34077991 - MLT2B1 LTR ERVL -289 231 91 4 1250 606 271 141 16 chr12 87179712 87179960 -34077570 + B4A SINE B4 5 283 -9 4 1250 1209 48 0 0 chr12 87180192 87180338 -34077192 + B1_Mus2 SINE Alu 2 147 0 4 1250 279 297 33 0 chr12 87180658 87180749 -34076781 - PB1D7 SINE Alu -5 115 22 4 1250 23 0 0 0 chr12 87181014 87181037 -34076493 + AT_rich Low_complexity Low_complexity 1 23 0 4 1250 818 201 78 25 chr12 87181037 87181241 -34076289 - ID_B1 SINE B4 0 224 10 4 1250 273 261 23 45 chr12 87181278 87181412 -34076118 + MLT1D LTR MaLR 1 128 -499 4 1250 632 328 99 65 chr12 87181545 87182161 -34075369 + MLT1D-int LTR MaLR 733 1369 -2 4 1250 531 320 131 47 chr12 87182169 87182618 -34074912 + MLT1D LTR MaLR 19 505 0 4 1250 298 272 49 0 chr12 87183195 87183276 -34074254 + PB1D10 SINE Alu 1 85 -32 5 1250 275 221 65 37 chr12 87183686 87183794 -34073736 - Charlie4a DNA MER1_type -40 468 358 5 1250 974 89 143 40 chr12 87183812 87183987 -34073543 + B2_Mm2 SINE B2 1 193 -2 5 1250 316 283 182 8 chr12 87183987 87184108 -34073422 + B1F SINE Alu 2 143 -6 5 1250 281 286 118 15 chr12 87184395 87184530 -34073000 + RSINE1 SINE B4 4 152 -13 5 1250 508 297 67 22 chr12 87185668 87185847 -34071683 - B3A SINE B2 -3 195 9 5 1250 289 368 147 8 chr12 87186432 87186684 -34070846 + Charlie2b DNA MER1_type 8 294 -2488 5 1250 294 271 0 0 chr12 87186687 87186746 -34070784 + B1F2 SINE Alu 5 63 -86 5 1250 544 264 16 0 chr12 87186797 87186926 -34070604 + ID_B1 SINE B4 94 224 0 5 1250 302 248 109 9 chr12 87186985 87187095 -34070435 + Charlie2b DNA MER1_type 1806 1926 -856 5 1250 1152 81 17 6 chr12 87187309 87187483 -34070047 + B2_Mm2 SINE B2 1 176 -19 5 1250 335 262 171 10 chr12 87187534 87187727 -34069803 + L1MD1 LINE L1 5048 5271 -875 5 1250 273 232 0 0 chr12 87187802 87187897 -34069633 + (TA)n Simple_repeat Simple_repeat 2 96 0 5 1250 430 257 120 50 chr12 87187903 87188152 -34069378 + L1MD1 LINE L1 5308 5572 -590 5 1250 981 311 90 20 chr12 87188170 87188616 -34068914 + MER21B LTR ERV1 16 492 -371 5 1250 420 243 183 64 chr12 87188666 87188917 -34068613 + MER21B LTR ERV1 578 858 -5 5 1250 788 272 232 23 chr12 87189014 87189484 -34068046 + MLT1F1 LTR MaLR 2 569 0 5 1250 490 315 93 19 chr12 87189536 87189924 -34067606 + L1MD1 LINE L1 5662 6093 -86 5 1250 398 139 231 65 chr12 87190747 87190855 -34066675 - B1_Mur1 SINE Alu -2 147 22 5 1250 996 46 2 0 chr12 87190873 87191016 -34066514 + B1_Mus2 SINE Alu 5 149 0 5 1250 1242 34 0 0 chr12 87191048 87191194 -34066336 + B1_Mm SINE Alu 2 147 0 5 1250 3147 155 136 85 chr12 87191331 87192189 -34065341 + RMER19B LTR ERVK 1 902 0 5 1250 339 207 0 58 chr12 87192536 87192623 -34064907 - PB1D7 SINE Alu -30 90 9 5 1250 3102 56 13 8 chr12 87193390 87193784 -34063746 + MTA_Mm LTR MaLR 1 396 0 5 1250 261 0 0 0 chr12 87194271 87194300 -34063230 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1250 253 338 0 0 chr12 87194322 87194399 -34063131 - ID4 SINE ID -5 78 2 5 1250 234 0 0 0 chr12 87194683 87194709 -34062821 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 5 1250 1343 222 57 9 chr12 87194767 87195098 -34062432 - ORR1E LTR MaLR -9 350 4 5 1250 517 277 121 76 chr12 87195569 87195646 -34061884 + MER58B DNA MER1_type 13 88 -253 5 1250 1125 124 79 0 chr12 87195646 87195824 -34061706 - B2_Mm2 SINE B2 -1 194 3 5 1250 517 277 121 76 chr12 87195824 87196035 -34061495 + MER58B DNA MER1_type 89 314 -27 5 1250 242 29 0 28 chr12 87196155 87196172 -34061358 + (GA)n Simple_repeat Simple_repeat 2 18 0 5 1250 210 37 0 0 chr12 87196172 87196199 -34061331 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1250 242 29 0 28 chr12 87196199 87196217 -34061313 + (GA)n Simple_repeat Simple_repeat 1 18 0 5 1250 500 255 102 12 chr12 87196220 87196387 -34061143 - B3A SINE B2 -16 182 1 5 1250 566 140 0 10 chr12 87196431 87196532 -34060998 + (TCC)n Simple_repeat Simple_repeat 3 102 0 5 1250 740 116 59 44 chr12 87196540 87196677 -34060853 - B1_Mus2 SINE Alu -13 137 1 5 1250 2003 145 3 6 chr12 87197147 87197459 -34060071 + RLTR10E LTR ERVK 1 311 0 5 1250 205 211 17 34 chr12 87198701 87198760 -34058770 + CT-rich Low_complexity Low_complexity 3 60 0 5 1250 197 65 0 31 chr12 87198891 87198923 -34058607 + (TAA)n Simple_repeat Simple_repeat 2 32 0 5 1250 363 179 28 0 chr12 87199362 87199468 -34058062 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 1250 27 0 0 0 chr12 87201188 87201215 -34056315 + AT_rich Low_complexity Low_complexity 1 27 0 5 1250 557 226 70 70 chr12 87201870 87202013 -34055517 - B1_Mur1 SINE Alu -5 144 2 5 1250 198 300 14 28 chr12 87202122 87202194 -34055336 - MIR SINE MIR -184 78 8 5 1250 353 250 74 0 chr12 87203178 87203286 -34054244 + MIR SINE MIR 128 243 -19 5 1250 224 279 39 1 chr12 87203907 87203986 -34053544 + L2b LINE L2 3256 3386 -40 5 1250 710 233 85 40 chr12 87208180 87208381 -34049149 - B3 SINE B2 -6 210 1 5 1250 246 62 0 0 chr12 87208390 87208422 -34049108 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 5 1250 1094 96 0 0 chr12 87208422 87208568 -34048962 - B1_Mus1 SINE Alu -1 147 2 5 1250 261 0 0 0 chr12 87211281 87211310 -34046220 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1250 732 269 73 24 chr12 87211830 87212036 -34045494 - B3 SINE B2 0 216 1 5 1250 408 344 54 0 chr12 87212081 87212267 -34045263 - Tigger5 DNA MER2_type -2166 240 45 5 1250 548 290 37 37 chr12 87212546 87212707 -34044823 - RSINE1 SINE B4 -2 163 3 5 1250 892 191 222 77 chr12 87212749 87213163 -34044367 - Lx7 LINE L1 0 7696 7223 5 1250 1223 165 78 0 chr12 87213381 87213587 -34043943 + URR1A DNA MER1_type 5 226 0 5 1250 2008 296 140 10 chr12 87213836 87214948 -34042582 - L1MC4 LINE L1 -181 7814 6468 5 1250 878 96 22 0 chr12 87214950 87215086 -34042444 - B1_Mus1 SINE Alu 0 148 10 5 1250 195 42 0 0 chr12 87216248 87216272 -34041258 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1250 255 31 0 0 chr12 87217036 87217068 -34040462 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1250 536 136 238 33 chr12 87217074 87217196 -34040334 - B1_Mur1 SINE Alu -1 148 2 5 1250 867 192 66 20 chr12 87217670 87217867 -34039663 - B3 SINE B2 -10 206 1 5 1250 645 199 108 54 chr12 87219471 87219657 -34037873 - B3A SINE B2 -2 196 1 5 1250 224 301 0 27 chr12 87220855 87220930 -34036600 + CT-rich Low_complexity Low_complexity 3 75 0 5 1250 1250 20 0 13 chr12 87221826 87221975 -34035555 - B1_Mus2 SINE Alu 0 147 1 5 1250 185 0 40 0 chr12 87222668 87222693 -34034837 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1250 214 354 50 0 chr12 87224535 87224634 -34032896 - MIRb SINE MIR -123 145 42 5 1250 631 313 92 78 chr12 87225562 87225843 -34031687 - B4A SINE B4 0 292 8 5 1250 1497 201 129 8 chr12 87225899 87226256 -34031274 - MTD LTR MaLR -12 407 8 5 1250 1206 269 79 30 chr12 87226598 87227130 -34030400 + L1ME1 LINE L1 5605 6162 -17 5 1250 792 278 22 58 chr12 87227163 87227472 -34030058 + L1ME3 LINE L1 5856 6151 -11 5 1250 516 188 23 0 chr12 87228189 87228322 -34029208 + CT-rich Low_complexity Low_complexity 1 136 0 5 1250 259 304 129 11 chr12 87228323 87228358 -34029172 - PB1 SINE Alu -20 107 4 5 1250 262 293 0 0 chr12 87228358 87228416 -34029114 - B4A SINE B4 -146 146 89 5 1250 397 271 28 9 chr12 87228742 87228850 -34028680 + PB1D10 SINE Alu 7 116 -1 5 1250 359 316 71 97 chr12 87234053 87234403 -34023127 - MER102b DNA MER1_type 0 341 1 5 1250 1275 106 32 0 chr12 87237338 87237527 -34020003 - B2_Mm2 SINE B2 0 195 1 5 1250 211 280 67 0 chr12 87237899 87237974 -34019556 - ID4 SINE ID -2 81 2 5 1250 195 42 0 0 chr12 87238021 87238045 -34019485 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5 1250 341 238 0 10 chr12 87238046 87238148 -34019382 + CT-rich Low_complexity Low_complexity 3 103 0 5 1250 246 224 88 15 chr12 87238876 87238944 -34018586 + ID4 SINE ID 2 74 -9 5 1250 272 250 24 7 chr12 87239581 87239653 -34017877 - MLT1A LTR MaLR -61 347 280 5 1250 403 238 0 0 chr12 87239653 87239733 -34017797 + B1_Mur3 SINE Alu 2 81 -68 5 1250 284 287 138 8 chr12 87240553 87240683 -34016847 + ID_B1 SINE B4 74 220 -4 5 1250 683 180 71 7 chr12 87240834 87240974 -34016556 - B1_Mur3 SINE Alu 0 149 1 5 1250 337 275 99 23 chr12 87241125 87241296 -34016234 - L1ME1 LINE L1 -51 6128 5945 5 1250 524 164 19 0 chr12 87241369 87241473 -34016057 + CT-rich Low_complexity Low_complexity 6 111 0 5 1250 805 199 0 0 chr12 87241490 87241631 -34015899 - B1_Mur3 SINE Alu -8 141 1 5 1250 268 319 135 8 chr12 87241638 87241875 -34015655 - L1ME1 LINE L1 -278 5884 5618 5 1250 5837 127 30 5 chr12 87242250 87243183 -34014347 - L1_Mur2 LINE L1 -1733 4144 3189 5 1250 8914 94 59 2 chr12 87243173 87244674 -34012856 + Lx2 LINE L1 5375 6921 -76 5 1250 355 262 82 7 chr12 87244855 87245001 -34012529 - L1MEc LINE L1 -3212 3107 2951 5 1250 895 259 180 19 chr12 87245443 87246002 -34011528 - L1MA5 LINE L1 -132 6159 5479 5 1250 282 29 0 0 chr12 87246082 87246117 -34011413 - U2 snRNA snRNA -153 35 1 5 1250 633 238 108 163 chr12 87246226 87246607 -34010923 - L1MA5 LINE L1 -2451 3692 3333 5 1250 655 257 62 13 chr12 87246624 87246815 -34010715 - B3A SINE B2 -13 203 1 5 1250 591 267 33 0 chr12 87246833 87246983 -34010547 - ID_B1 SINE B4 -5 219 65 5 1250 348 176 0 0 chr12 87246993 87247061 -34010469 + CT-rich Low_complexity Low_complexity 2 69 0 5 1250 761 273 27 54 chr12 87247139 87247360 -34010170 + B3 SINE B2 1 215 -1 5 1250 364 282 225 23 chr12 87247604 87247999 -34009531 - L1MEc LINE L1 -4283 2117 1643 5 1250 797 168 0 51 chr12 87248065 87248222 -34009308 - B1_Mur3 SINE Alu 0 149 1 5 1250 233 332 75 70 chr12 87248231 87248671 -34008859 - L1MEc LINE L1 -5867 533 92 5 1250 388 226 8 8 chr12 87250048 87250173 -34007357 + CT-rich Low_complexity Low_complexity 2 126 0 5 1250 208 81 54 0 chr12 87250174 87250211 -34007319 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 5 1250 971 48 0 0 chr12 87250211 87250337 -34007193 - B1_Mus2 SINE Alu -1 146 21 5 1250 542 219 17 17 chr12 87250404 87250576 -34006954 + CT-rich Low_complexity Low_complexity 2 173 0 5 1250 570 250 0 0 chr12 87250600 87250736 -34006794 - MTEa LTR MaLR -51 328 193 5 1250 2171 62 31 0 chr12 87251075 87251365 -34006165 - L1_Mus1 LINE L1 0 6567 6269 5 1250 386 296 25 56 chr12 87254193 87254354 -34003176 - RSINE1 SINE B4 -2 163 8 5 1250 310 338 49 7 chr12 87254579 87254722 -34002808 + B1F SINE Alu 1 149 0 5 1250 244 306 141 22 chr12 87254836 87254955 -34002575 + L1M3 LINE L1 2723 2863 -3283 6 1250 1078 30 69 0 chr12 87254955 87255086 -34002444 - B1_Mm SINE Alu -6 141 2 6 1250 253 272 134 64 chr12 87255086 87255243 -34002287 + L1M3 LINE L1 2865 3032 -3114 6 1250 389 234 45 45 chr12 87255258 87255370 -34002160 + PB1D10 SINE Alu 6 117 0 6 1250 189 0 0 0 chr12 87255635 87255656 -34001874 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1250 1169 68 0 0 chr12 87255656 87255803 -34001727 - B1_Mus2 SINE Alu 0 147 1 6 1250 308 299 141 22 chr12 87256165 87256540 -34000990 + L1M3 LINE L1 4256 4662 -1478 6 1250 210 37 0 0 chr12 87256540 87256567 -34000963 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 6 1250 948 111 0 15 chr12 87256570 87256707 -34000823 + B1_Mus1 SINE Alu 3 137 -11 6 1250 277 252 70 43 chr12 87256816 87256986 -34000544 + L1M3 LINE L1 4793 4965 -1175 6 1250 871 175 28 0 chr12 87257197 87257340 -34000190 - B1_Mur3 SINE Alu -2 147 1 6 1250 367 269 21 11 chr12 87257558 87257652 -33999878 + PB1 SINE Alu 26 120 -7 6 1250 295 254 14 0 chr12 87258488 87258559 -33998971 - ID_B1 SINE B4 -53 171 100 6 1250 241 231 91 15 chr12 87258502 87258568 -33998962 - B1F2 SINE Alu -70 79 9 6 1250 1054 30 98 0 chr12 87259509 87259641 -33997889 - B1_Mus2 SINE Alu -1 146 2 6 1250 182 143 71 0 chr12 87260754 87260796 -33996734 - L2a LINE L2 -108 3318 3274 6 1250 371 277 70 35 chr12 87264136 87264278 -33993252 + RSINE1 SINE B4 14 160 -5 6 1250 469 270 27 0 chr12 87265906 87266017 -33991513 - PB1D10 SINE Alu 0 117 4 6 1250 189 0 0 0 chr12 87266166 87266187 -33991343 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1250 269 48 48 0 chr12 87266256 87266298 -33991232 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 6 1250 904 233 29 38 chr12 87268477 87268687 -33988843 + B3 SINE B2 2 209 -7 6 1250 441 308 62 20 chr12 87269093 87269239 -33988291 + RSINE1 SINE B4 8 159 -6 6 1250 251 195 36 24 chr12 87269565 87269649 -33987881 - MER102c DNA MER1_type -2 329 245 6 1250 442 268 40 8 chr12 87270481 87270605 -33986925 + MER3 DNA MER1_type 82 209 0 6 1250 298 234 16 0 chr12 87270555 87270619 -33986911 - MER3 DNA MER1_type -111 98 34 6 1250 221 224 0 0 chr12 87271070 87271119 -33986411 + G-rich Low_complexity Low_complexity 1 49 0 6 1250 249 33 0 0 chr12 87271476 87271506 -33986024 + (TTG)n Simple_repeat Simple_repeat 3 32 0 6 1250 789 156 217 11 chr12 87271780 87271955 -33985575 - B3 SINE B2 -5 211 1 6 1250 250 172 212 30 chr12 87272093 87272159 -33985371 - ID4_ SINE ID -4 79 2 6 1250 216 0 0 0 chr12 87272625 87272649 -33984881 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1250 378 0 0 0 chr12 87272659 87272701 -33984829 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 6 1250 947 140 0 0 chr12 87272703 87272839 -33984691 - B1_Mur4 SINE Alu -13 137 2 6 1250 330 304 0 0 chr12 87275018 87275097 -33982433 - ID2 SINE ID -3 80 2 6 1250 1211 293 36 12 chr12 87275155 87275649 -33981881 - L1MB7 LINE L1 -68 6116 5611 6 1250 318 292 91 71 chr12 87275676 87275736 -33981794 - L1M4 LINE L1 -652 5512 5445 6 1250 297 0 0 0 chr12 87275736 87275769 -33981761 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1250 386 251 101 6 chr12 87275769 87276020 -33981510 - L1M4 LINE L1 -720 5444 5188 6 1250 348 88 313 17 chr12 87276040 87276155 -33981375 - B2_Mm2 SINE B2 0 195 47 6 1250 1114 109 55 0 chr12 87276206 87276371 -33981159 - B2_Mm1t SINE B2 -18 175 2 6 1250 785 262 37 44 chr12 87276371 87276666 -33980864 - L1M4 LINE L1 -981 5165 4873 6 1250 435 328 78 38 chr12 87276823 87277278 -33980252 + L1M5 LINE L1 3687 4162 -1984 6 1250 294 244 37 0 chr12 87277554 87277636 -33979894 - Lx8 LINE L1 -144 7329 7245 6 1250 302 176 0 50 chr12 87277787 87277847 -33979683 - B2_Mm2 SINE B2 -137 58 2 6 1250 35 0 0 0 chr12 87278177 87278212 -33979318 + AT_rich Low_complexity Low_complexity 1 35 0 6 1250 366 103 116 14 chr12 87278250 87278319 -33979211 + PB1 SINE Alu 50 125 -2 6 1250 361 242 182 6 chr12 87278518 87278672 -33978858 + L1M5 LINE L1 5474 5654 -508 6 1250 297 0 0 0 chr12 87278772 87278805 -33978725 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1250 543 81 0 0 chr12 87278967 87279053 -33978477 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 6 1250 1365 78 39 0 chr12 87279496 87279676 -33977854 - B2_Mm2 SINE B2 -7 188 2 6 1250 484 254 47 8 chr12 87280772 87280899 -33976631 - RSINE1 SINE B4 -31 134 3 6 1250 216 0 0 0 chr12 87281771 87281795 -33975735 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1250 522 164 4 2 chr12 87282844 87282950 -33974580 + B1_Mus1 SINE Alu 1 107 -13 6 1250 240 248 0 66 chr12 87283090 87283180 -33974350 - L1_Mur1 LINE L1 -2872 3014 2930 6 1250 184 281 18 0 chr12 87285230 87285287 -33972243 + MIRb SINE MIR 2 59 -209 6 1250 4113 178 40 47 chr12 87285343 87286176 -33971354 + Lx9 LINE L1 6517 7343 -301 6 1250 25 0 0 0 chr12 87287115 87287140 -33970390 + AT_rich Low_complexity Low_complexity 1 25 0 6 1250 555 283 78 74 chr12 87287151 87287329 -33970201 + MER2 DNA MER2_type 88 280 -65 6 1250 503 53 66 0 chr12 87287329 87287405 -33970125 + L1Md_F2 LINE L1 6502 6582 0 6 1250 555 283 78 74 chr12 87287405 87287482 -33970048 + MER2 DNA MER2_type 281 344 -1 6 1250 253 301 14 0 chr12 87287541 87287614 -33969916 - ID4_ SINE ID -8 75 2 6 1250 302 301 20 111 chr12 87289418 87289571 -33967959 - Charlie4z DNA MER1_type -15 152 14 6 1250 537 203 0 63 chr12 87290423 87290549 -33966981 - B1_Mur2 SINE Alu -21 128 11 6 1250 303 298 19 28 chr12 87290465 87290572 -33966958 - B4A SINE B4 -111 181 76 6 1250 934 240 56 0 chr12 87292631 87292827 -33964703 + B3 SINE B2 5 211 -5 6 1250 956 194 9 54 chr12 87292885 87293108 -33964422 - B3 SINE B2 0 216 4 6 1250 376 237 195 0 chr12 87293764 87293882 -33963648 - MER3 DNA MER1_type -23 186 46 6 1251 568 265 70 22 chr12 87295243 87295428 -33962102 - B3A SINE B2 0 198 5 6 1251 256 276 21 75 chr12 87299086 87299105 -33958425 - MT2B LTR ERVL -344 257 170 6 1251 378 162 27 0 chr12 87299105 87299179 -33958351 - B1_Mus2 SINE Alu -66 81 6 6 1251 612 87 0 0 chr12 87301959 87302051 -33955479 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 1251 628 253 109 35 chr12 87302830 87303141 -33954389 + L1MB2 LINE L1 5838 6171 0 6 1251 414 39 0 0 chr12 87303369 87303421 -33954109 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1251 285 254 15 15 chr12 87303437 87303505 -33954025 - ID4_ SINE ID -14 69 2 6 1251 21 0 0 0 chr12 87303513 87303534 -33953996 + AT_rich Low_complexity Low_complexity 1 21 0 6 1251 216 0 0 0 chr12 87303535 87303559 -33953971 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6 1251 328 111 0 36 chr12 87303584 87303640 -33953890 - B2_Mm2 SINE B2 -94 101 48 6 1251 1257 92 35 0 chr12 87303715 87303888 -33953642 - B2_Mm1t SINE B2 -14 179 1 6 1251 237 253 42 42 chr12 87303895 87303990 -33953540 + MIRb SINE MIR 136 230 -38 6 1251 226 259 16 122 chr12 87307721 87307844 -33949686 + ID_B1 SINE B4 67 176 -48 6 1251 490 152 27 0 chr12 87307755 87307859 -33949671 + PB1D9 SINE Alu 5 113 -7 6 1251 27 49 0 0 chr12 87307859 87307900 -33949630 + AT_rich Low_complexity Low_complexity 1 41 0 6 1251 478 275 24 72 chr12 87307912 87308120 -33949410 + B3A SINE B2 1 198 0 6 1251 554 248 8 0 chr12 87308133 87308250 -33949280 - PB1D9 SINE Alu 0 120 3 6 1251 295 302 132 0 chr12 87308336 87308442 -33949088 - RSINE1 SINE B4 -4 161 42 6 1251 227 299 10 20 chr12 87308442 87308541 -33948989 + L1MA8 LINE L1 6133 6230 -61 6 1251 270 225 0 0 chr12 87308567 87308647 -33948883 + (TTTG)n Simple_repeat Simple_repeat 2 81 0 6 1251 1106 95 0 7 chr12 87308652 87308801 -33948729 - B1_Mus1 SINE Alu 0 148 1 6 1251 429 219 0 0 chr12 87309264 87309346 -33948184 - B1F SINE Alu -66 83 2 6 1251 323 292 10 10 chr12 87309265 87309362 -33948168 - B4A SINE B4 -125 167 71 6 1251 409 327 74 25 chr12 87309754 87309917 -33947613 - B3A SINE B2 0 198 28 6 1251 359 234 0 0 chr12 87310132 87310209 -33947321 + ID_B1 SINE B4 145 221 -3 6 1251 271 261 52 52 chr12 87310201 87310298 -33947232 - Charlie5 DNA MER1_type -2527 97 1 6 1251 191 146 24 0 chr12 87312358 87312399 -33945131 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1251 195 69 0 0 chr12 87313039 87313068 -33944462 + (CTCA)n Simple_repeat Simple_repeat 4 32 0 6 1251 346 132 48 0 chr12 87313233 87313316 -33944214 + (TCTCTG)n Simple_repeat Simple_repeat 3 89 0 6 1251 253 247 35 47 chr12 87313334 87313419 -33944111 + CT-rich Low_complexity Low_complexity 1 84 0 6 1251 264 197 31 62 chr12 87313529 87313594 -33943936 - ID4 SINE ID -18 65 3 6 1251 326 238 85 63 chr12 87313729 87313901 -33943629 - L1MA4A LINE L1 -300 6000 5815 6 1251 284 259 12 0 chr12 87314068 87314149 -33943381 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1251 717 275 49 86 chr12 87315103 87315489 -33942041 - MLT1F LTR MaLR -57 491 120 6 1251 502 273 157 27 chr12 87315556 87315850 -33941680 - L1MB3 LINE L1 -25 6158 5827 6 1251 331 266 0 12 chr12 87315889 87315993 -33941537 - L1MB3 LINE L1 -480 5709 5609 6 1251 423 263 129 59 chr12 87316731 87317126 -33940404 - L1MB3 LINE L1 -587 5596 5181 6 1251 1605 32 16 0 chr12 87317149 87317338 -33940192 - B2_Mm1a SINE B2 0 193 2 6 1251 491 244 34 0 chr12 87317352 87317471 -33940059 + B1_Mur4 SINE Alu 5 127 -23 6 1251 510 212 76 0 chr12 87317570 87317692 -33939838 - B3A SINE B2 -47 146 5 6 1251 259 342 9 0 chr12 87317717 87317828 -33939702 - L1MB3 LINE L1 -977 5169 5058 6 1251 381 297 9 0 chr12 87317967 87318078 -33939452 + B1F SINE Alu 37 148 -1 6 1251 237 287 67 37 chr12 87318821 87318955 -33938575 - L1M5 LINE L1 -542 5698 5561 6 1251 296 202 89 36 chr12 87320089 87320194 -33937336 + B1F1 SINE Alu 19 148 -1 6 1251 859 160 21 7 chr12 87320268 87320413 -33937117 - B1_Mus1 SINE Alu 0 148 2 6 1251 292 270 88 50 chr12 87320822 87320982 -33936548 - L1MD LINE L1 -1151 4995 4830 7 1251 17523 47 0 1 chr12 87321452 87324297 -33933233 - L1Md_F2 LINE L1 0 6582 3742 7 1251 313 307 78 16 chr12 87324371 87324500 -33933030 + L2c LINE L2 3023 3159 -228 7 1251 192 310 17 0 chr12 87326277 87326335 -33931195 - MIR SINE MIR -197 65 7 7 1251 247 333 35 26 chr12 87328492 87328606 -33928924 + L3 LINE CR1 3190 3304 -1185 7 1251 374 238 158 0 chr12 87328905 87329006 -33928524 + PB1D10 SINE Alu 1 117 0 7 1251 591 240 20 20 chr12 87329378 87329527 -33928003 - B1_Mur1 SINE Alu 0 149 1 7 1251 410 263 145 43 chr12 87329730 87329937 -33927593 - MIR SINE MIR -17 245 18 7 1251 1524 48 16 16 chr12 87330349 87330539 -33926991 + B2_Mm2 SINE B2 2 191 -4 7 1251 463 283 0 55 chr12 87331007 87331134 -33926396 - PB1D7 SINE Alu 0 120 1 7 1251 236 293 77 21 chr12 87331794 87331937 -33925593 - L1M5 LINE L1 -264 5900 5750 7 1251 456 232 26 9 chr12 87332179 87332292 -33925238 - PB1D10 SINE Alu -2 115 1 7 1251 358 217 142 0 chr12 87332325 87332445 -33925085 - L1M5 LINE L1 -1018 5426 5290 7 1251 388 182 396 39 chr12 87332499 87332653 -33924877 + B3 SINE B2 2 210 -6 7 1251 29 28 0 0 chr12 87332653 87332689 -33924841 + AT_rich Low_complexity Low_complexity 1 36 0 7 1251 225 297 53 13 chr12 87332689 87332764 -33924766 - L1M5 LINE L1 -895 5251 5174 7 1251 353 250 223 0 chr12 87332769 87332881 -33924649 - ID_B1 SINE B4 -1 223 87 7 1251 287 288 48 8 chr12 87332903 87333029 -33924501 - L1M5 LINE L1 -987 5159 5029 7 1251 290 238 71 12 chr12 87334376 87334461 -33923069 - PB1 SINE Alu -16 111 22 7 1251 417 20 0 0 chr12 87334521 87334571 -33922959 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1251 245 260 18 91 chr12 87335514 87335624 -33921906 - RMER1C Other Other -4 1338 1237 7 1251 270 304 67 19 chr12 87335743 87335768 -33921762 + ID SINE ID 53 82 -142 7 1251 330 262 12 12 chr12 87335768 87335849 -33921681 + PB1D10 SINE Alu 2 82 -35 7 1251 639 315 52 44 chr12 87335990 87336242 -33921288 + B4A SINE B4 39 292 0 7 1251 227 238 0 0 chr12 87336253 87336295 -33921235 + (CG)n Simple_repeat Simple_repeat 2 43 0 7 1251 304 182 0 0 chr12 87337556 87337611 -33919919 - L2a LINE L2 -5 3421 3367 7 1251 294 222 17 204 chr12 87337972 87338153 -33919377 - MTE2b LTR MaLR -29 350 204 7 1251 225 257 216 0 chr12 87338237 87338311 -33919219 - MTE2b LTR MaLR -287 92 3 7 1251 21 57 0 0 chr12 87338411 87338446 -33919084 + AT_rich Low_complexity Low_complexity 1 35 0 7 1251 278 275 122 40 chr12 87338850 87338998 -33918532 - RSINE1 SINE B4 -4 161 2 7 1251 200 125 25 0 chr12 87339007 87339047 -33918483 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1251 519 266 19 7 chr12 87339106 87339261 -33918269 - RSINE1 SINE B4 -8 157 1 7 1251 207 191 0 0 chr12 87339682 87339724 -33917806 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1251 498 309 11 73 chr12 87340717 87340895 -33916635 - MER58A DNA MER1_type -47 177 11 7 1251 180 324 52 35 chr12 87340918 87341033 -33916497 - MER5A DNA MER1_type -38 151 35 7 1251 267 103 0 0 chr12 87341109 87341148 -33916382 + (CCTG)n Simple_repeat Simple_repeat 1 39 0 7 1251 3172 34 42 3 chr12 87342909 87343290 -33914240 - MTA_Mm LTR MaLR 0 396 1 7 1251 199 316 118 39 chr12 87343552 87343654 -33913876 - MIRb SINE MIR -111 157 48 7 1251 850 124 180 75 chr12 87344645 87344845 -33912685 + URR1A DNA MER1_type 6 226 0 7 1251 930 80 0 28 chr12 87345259 87345400 -33912130 + B1_Mus2 SINE Alu 11 147 0 7 1251 477 0 0 0 chr12 87345862 87345915 -33911615 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1251 378 214 36 0 chr12 87346258 87346342 -33911188 + PB1D7 SINE Alu 25 111 -9 7 1251 554 304 55 63 chr12 87346370 87346836 -33910694 - L1MB1 LINE L1 -3 6168 5703 7 1251 216 239 0 0 chr12 87347255 87347301 -33910229 + B4A SINE B4 2 47 -245 7 1251 369 0 0 0 chr12 87347302 87347343 -33910187 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1251 297 0 0 0 chr12 87347343 87347375 -33910155 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1251 721 201 241 0 chr12 87350682 87350856 -33906674 - B3 SINE B2 0 216 1 7 1251 21 0 0 0 chr12 87350866 87350887 -33906643 + AT_rich Low_complexity Low_complexity 1 21 0 7 1251 749 114 14 21 chr12 87350912 87351055 -33906475 + L1_Mus3 LINE L1 6496 6637 -1 7 1251 355 239 160 12 chr12 87351135 87351304 -33906226 + L1MC3 LINE L1 6875 7068 -717 7 1251 226 292 0 15 chr12 87351378 87351444 -33906086 + B4A SINE B4 11 75 -217 7 1251 225 0 0 0 chr12 87351917 87351942 -33905588 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1251 525 16 0 0 chr12 87351942 87352003 -33905527 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1251 262 276 137 8 chr12 87352023 87352147 -33905383 - MIRb SINE MIR -73 195 56 7 1251 624 27 0 0 chr12 87355582 87355656 -33901874 + (TAG)n Simple_repeat Simple_repeat 1 74 0 7 1251 390 284 27 9 chr12 87355699 87355809 -33901721 - RSINE1 SINE B4 -26 139 28 7 1251 233 280 86 53 chr12 87355888 87356039 -33901491 + MIR SINE MIR 107 262 0 7 1251 301 279 0 0 chr12 87357173 87357241 -33900289 + GA-rich Low_complexity Low_complexity 3 70 0 7 1251 882 0 0 0 chr12 87357879 87357977 -33899553 + (TTTCC)n Simple_repeat Simple_repeat 1 98 0 7 1251 423 0 0 0 chr12 87359460 87359507 -33898023 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1251 270 0 0 0 chr12 87359507 87359536 -33897994 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1251 210 328 31 0 chr12 87359741 87359805 -33897725 - B4A SINE B4 -169 123 58 7 1251 892 140 35 0 chr12 87359973 87360116 -33897414 - B1_Mur4 SINE Alu -2 148 1 7 1251 618 264 98 81 chr12 87360433 87360606 -33896924 - B3A SINE B2 -19 176 1 7 1251 23 33 0 0 chr12 87360681 87360711 -33896819 + AT_rich Low_complexity Low_complexity 1 30 0 7 1251 1492 54 0 16 chr12 87360743 87360932 -33896598 - B2_Mm2 SINE B2 -9 186 1 7 1251 314 227 0 0 chr12 87365398 87365464 -33892066 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 7 1251 653 344 95 16 chr12 87367334 87367765 -33889765 + MER74B LTR ERVL 1 465 -157 7 1251 270 0 0 0 chr12 87367779 87367809 -33889721 + (TGG)n Simple_repeat Simple_repeat 2 31 0 7 1251 466 237 7 112 chr12 87369795 87369947 -33887583 + B4A SINE B4 5 140 -152 7 1251 21 0 0 0 chr12 87370759 87370780 -33886750 + AT_rich Low_complexity Low_complexity 1 21 0 7 1251 201 333 49 0 chr12 87371262 87371343 -33886187 - L4 LINE RTE -569 1460 1376 7 1251 441 161 16 39 chr12 87371530 87371659 -33885871 + CT-rich Low_complexity Low_complexity 1 126 0 7 1251 276 243 0 0 chr12 87372691 87372765 -33884765 + (TA)n Simple_repeat Simple_repeat 1 74 0 7 1251 1036 104 14 14 chr12 87372801 87372947 -33884583 + B1_Mus1 SINE Alu 2 147 -1 7 1251 273 57 0 0 chr12 87372947 87372982 -33884548 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1251 295 205 62 43 chr12 87373361 87373484 -33884046 + L1M3 LINE L1 5267 5391 -755 7 1251 568 237 29 7 chr12 87374095 87374235 -33883295 - B3 SINE B2 -71 145 3 7 1251 317 330 124 22 chr12 87374791 87375064 -33882466 + L1MB8 LINE L1 4795 5095 -1051 7 1251 370 249 60 108 chr12 87375265 87375450 -33882080 + B4A SINE B4 117 292 0 7 1251 1146 264 101 36 chr12 87375460 87376351 -33881179 + L1MB8 LINE L1 5210 6141 -37 7 1251 270 256 150 30 chr12 87376360 87376493 -33881037 + ID_B1 SINE B4 76 224 0 7 1251 664 195 25 0 chr12 87376564 87376682 -33880848 + B1F SINE Alu 1 121 -28 7 1251 346 241 172 8 chr12 87376784 87376918 -33880612 + B3A SINE B2 2 157 -41 7 1251 929 56 24 0 chr12 87376989 87377114 -33880416 - B2_Mm2 SINE B2 -66 129 2 7 1251 597 207 41 41 chr12 87379250 87379396 -33878134 + B1_Mur1 SINE Alu 2 147 -2 7 1251 345 111 119 36 chr12 87379831 87379915 -33877615 - Lx8 LINE L1 0 7473 7383 7 1251 366 23 0 0 chr12 87379932 87379975 -33877555 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1251 450 186 139 56 chr12 87380690 87380798 -33876732 - PB1D9 SINE Alu -2 118 2 7 1251 326 262 246 7 chr12 87380815 87380957 -33876573 + B4A SINE B4 2 177 -115 7 1251 588 29 0 0 chr12 87381032 87381102 -33876428 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1251 287 212 221 12 chr12 87381308 87381394 -33876136 + B1F SINE Alu 33 136 -13 7 1251 807 246 38 19 chr12 87381399 87381610 -33875920 - B3 SINE B2 0 216 2 7 1251 353 310 26 0 chr12 87381650 87381763 -33875767 + RSINE1 SINE B4 15 130 -35 7 1251 628 200 37 30 chr12 87381836 87381970 -33875560 + B1_Mur1 SINE Alu 2 136 -13 7 1251 216 0 0 0 chr12 87381970 87381994 -33875536 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 7 1251 607 162 0 9 chr12 87382571 87382683 -33874847 + PB1D10 SINE Alu 6 116 -1 7 1251 1062 100 118 0 chr12 87382857 87383027 -33874503 + B2_Mm1a SINE B2 2 191 -2 7 1251 208 318 0 0 chr12 87383090 87383153 -33874377 + MIRc SINE MIR 148 210 -58 7 1251 222 37 0 0 chr12 87383240 87383267 -33874263 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1251 410 273 78 36 chr12 87383403 87383570 -33873960 - MLT1F2 LTR MaLR -16 544 371 7 1251 216 0 0 0 chr12 87383617 87383641 -33873889 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 7 1251 1531 126 93 0 chr12 87383920 87384190 -33873340 - RMER19B LTR ERVK 0 902 608 7 1251 754 145 0 16 chr12 87384191 87384317 -33873213 - RMER19B LTR ERVK -653 249 126 7 1251 541 216 18 26 chr12 87384916 87385030 -33872500 - RSINE1 SINE B4 -52 113 1 7 1251 387 0 0 0 chr12 87385069 87385112 -33872418 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1251 508 206 25 12 chr12 87385126 87385288 -33872242 + CT-rich Low_complexity Low_complexity 3 166 0 8 1251 1126 110 42 12 chr12 87385342 87385625 -33871905 + ORR1A2 LTR MaLR 11 327 0 8 1251 317 261 186 52 chr12 87385625 87385817 -33871713 + B4A SINE B4 75 292 0 8 1251 299 274 71 0 chr12 87385978 87386062 -33871468 - B3 SINE B2 -2 214 125 8 1251 669 305 69 40 chr12 87386105 87386453 -33871077 - ORR1E LTR MaLR 0 359 2 8 1251 1480 293 59 30 chr12 87387044 87387537 -33869993 - L1MB3 LINE L1 -55 6128 5616 8 1251 1065 108 0 7 chr12 87387537 87387686 -33869844 - B1_Mus1 SINE Alu 0 148 1 8 1251 1480 293 59 30 chr12 87387686 87387819 -33869711 - L1MB3 LINE L1 -568 5615 5484 8 1251 243 194 0 0 chr12 87387977 87388039 -33869491 - RMER15 LTR ERVL -107 468 407 8 1251 544 246 50 14 chr12 87388794 87388934 -33868596 - B1F1 SINE Alu 0 149 5 8 1251 239 304 14 42 chr12 87388941 87389013 -33868517 + MER112 DNA MER1_type 1 70 -191 8 1251 512 248 160 0 chr12 87389642 87389767 -33867763 + RSINE1 SINE B4 11 155 -10 8 1251 642 229 0 0 chr12 87389897 87390015 -33867515 - PB1D9 SINE Alu -1 119 2 8 1251 254 280 117 29 chr12 87390494 87390597 -33866933 + PB1D10 SINE Alu 1 112 -5 8 1251 483 265 82 59 chr12 87391118 87391313 -33866217 + ID_B1 SINE B4 6 201 -23 8 1251 558 186 8 41 chr12 87391327 87391450 -33866080 + PB1D9 SINE Alu 1 119 -1 8 1251 887 179 7 20 chr12 87391509 87391657 -33865873 + B1_Mus1 SINE Alu 2 147 -1 8 1251 21 0 0 0 chr12 87391657 87391678 -33865852 + AT_rich Low_complexity Low_complexity 1 21 0 8 1251 298 193 54 108 chr12 87392818 87392911 -33864619 + B4A SINE B4 205 292 0 8 1251 186 133 0 0 chr12 87393014 87393044 -33864486 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 8 1251 447 248 8 33 chr12 87393607 87393728 -33863802 - PB1 SINE Alu -3 124 7 8 1251 416 301 9 0 chr12 87393748 87393861 -33863669 + PB1 SINE Alu 3 116 -11 8 1251 379 266 37 112 chr12 87395040 87395063 -33862467 + ID_B1 SINE B4 70 218 -6 8 1251 520 252 43 51 chr12 87395063 87395201 -33862329 + B1F SINE Alu 7 143 -6 8 1251 760 226 94 39 chr12 87396101 87396128 -33861402 - B3 SINE B2 -1 215 189 8 1251 228 35 0 0 chr12 87396128 87396157 -33861373 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1251 760 226 94 39 chr12 87396157 87396332 -33861198 - B3 SINE B2 -28 188 2 8 1251 188 294 165 0 chr12 87396555 87396640 -33860890 - L2 LINE L2 -870 2549 2451 8 1251 408 117 0 0 chr12 87397098 87397175 -33860355 + (TC)n Simple_repeat Simple_repeat 2 78 0 8 1251 691 269 98 54 chr12 87397241 87397465 -33860065 - B4A SINE B4 -56 236 3 8 1251 258 323 0 0 chr12 87399592 87399657 -33857873 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 8 1251 5095 48 5 35 chr12 87400910 87401562 -33855968 - L1Md_F2 LINE L1 0 6582 5951 8 1251 869 254 76 174 chr12 87402005 87402192 -33855338 + MTE2a LTR MaLR 1 197 -182 8 1251 453 36 0 0 chr12 87402192 87402247 -33855283 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 8 1251 1135 97 0 11 chr12 87402254 87402432 -33855098 + (TTC)n Simple_repeat Simple_repeat 3 178 0 8 1251 869 254 76 174 chr12 87402432 87402656 -33854874 + MTE2a LTR MaLR 198 379 0 8 1251 761 337 38 28 chr12 87405900 87406187 -33851343 + B4A SINE B4 3 292 0 8 1251 1685 16 5 0 chr12 87406927 87407118 -33850412 + B2_Mm1a SINE B2 1 192 -1 8 1251 199 300 33 0 chr12 87407311 87407371 -33850159 - MIRc SINE MIR -133 135 74 8 1251 514 239 37 0 chr12 87407430 87407539 -33849991 - PB1D10 SINE Alu 0 117 5 8 1251 785 164 42 14 chr12 87408646 87408788 -33848742 - B1_Mur2 SINE Alu -2 147 2 8 1251 363 350 110 7 chr12 87409348 87409647 -33847883 + L2b LINE L2 2430 2759 -660 8 1251 304 346 79 76 chr12 87409801 87410155 -33847375 + L2b LINE L2 2981 3335 -40 8 1251 492 254 175 23 chr12 87411148 87411325 -33846205 - B3 SINE B2 -11 205 2 8 1251 571 235 88 7 chr12 87411403 87411540 -33845990 + B1F1 SINE Alu 1 148 -1 8 1251 816 219 6 59 chr12 87411646 87411816 -33845714 + B3A SINE B2 2 162 -36 8 1251 546 171 0 0 chr12 87411795 87411877 -33845653 - B1_Mur3 SINE Alu -65 84 3 8 1251 1179 125 87 15 chr12 87411878 87412073 -33845457 - MTC LTR MaLR -212 209 1 8 1251 905 224 15 20 chr12 87412758 87412954 -33844576 - B3A SINE B2 -1 197 3 8 1251 1191 184 39 5 chr12 87413406 87413614 -33843916 + B3 SINE B2 2 216 0 8 1251 622 264 24 36 chr12 87413629 87413794 -33843736 + RSINE1 SINE B4 3 165 0 8 1251 345 320 73 7 chr12 87413941 87414098 -33843432 - MIRb SINE MIR -58 210 50 8 1251 222 256 0 0 chr12 87414651 87414694 -33842836 + MER5B DNA MER1_type 133 175 -3 8 1251 412 323 26 46 chr12 87414876 87415071 -33842459 + MER102c DNA MER1_type 70 260 -71 8 1251 936 174 196 6 chr12 87415389 87415568 -33841962 - B3 SINE B2 -1 215 3 8 1251 798 124 7 42 chr12 87416209 87416352 -33841178 + B1_Mur3 SINE Alu 12 149 0 8 1251 450 0 0 0 chr12 87417932 87417982 -33839548 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1251 272 137 20 0 chr12 87419901 87419952 -33837578 + CT-rich Low_complexity Low_complexity 1 52 0 8 1251 737 312 10 16 chr12 87421134 87421146 -33836384 - B3A SINE B2 -5 193 182 8 1251 297 0 0 0 chr12 87421146 87421179 -33836351 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1251 737 312 10 16 chr12 87421179 87421358 -33836172 - B3A SINE B2 -17 181 3 8 1251 193 365 155 9 chr12 87421373 87421489 -33836041 - L2a LINE L2 -28 3398 3266 8 1251 180 147 59 0 chr12 87422001 87422035 -33835495 - MIR SINE MIR -64 144 109 8 1251 1180 95 0 0 chr12 87422566 87422713 -33834817 - B1_Mus2 SINE Alu 0 147 1 8 1251 250 352 16 32 chr12 87422721 87422847 -33834683 - PB1 SINE Alu -3 124 1 8 1251 518 264 8 37 chr12 87422907 87423041 -33834489 - ID_B1 SINE B4 -2 222 93 8 1251 398 248 115 8 chr12 87424402 87424532 -33832998 - L2a LINE L2 -1 3425 3282 8 1251 1413 69 32 5 chr12 87424727 87424916 -33832614 - B2_Mm2 SINE B2 0 195 2 8 1252 199 54 0 51 chr12 87425876 87425915 -33831615 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1252 828 217 126 5 chr12 87426368 87426567 -33830963 - ID_B1 SINE B4 0 224 2 8 1252 207 271 0 0 chr12 87427446 87427494 -33830036 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1252 189 0 0 0 chr12 87427527 87427548 -33829982 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1252 285 296 180 17 chr12 87427927 87428099 -33829431 + MIRc SINE MIR 38 237 -31 8 1252 377 217 41 19 chr12 87428195 87428315 -33829215 - RSINE1 SINE B4 -165 127 6 8 1252 210 143 0 0 chr12 87428408 87428443 -33829087 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1252 331 283 39 0 chr12 87428443 87428538 -33828992 - B1F SINE Alu -5 115 16 8 1252 237 65 0 0 chr12 87428558 87428589 -33828941 + (TCC)n Simple_repeat Simple_repeat 3 33 0 8 1252 439 261 61 40 chr12 87428591 87428610 -33828920 - B4 SINE B4 -63 229 147 8 1252 811 129 0 0 chr12 87428610 87428726 -33828804 - B1_Mus1 SINE Alu -28 120 5 8 1252 439 261 61 40 chr12 87428726 87428739 -33828791 - B4 SINE B4 -63 146 79 8 1252 511 228 17 26 chr12 87428740 87428857 -33828673 - PB1D10 SINE Alu 0 117 2 8 1252 243 79 0 0 chr12 87429393 87429431 -33828099 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1252 904 187 0 7 chr12 87429434 87429585 -33827945 - B1_Mur4 SINE Alu 0 150 1 8 1252 538 298 100 129 chr12 87429770 87430151 -33827379 - ORR1D1 LTR MaLR -4 370 1 8 1252 947 228 56 32 chr12 87430151 87430400 -33827130 + B4A SINE B4 38 292 0 8 1252 969 141 0 32 chr12 87430497 87430651 -33826879 + B1_Mur4 SINE Alu 1 149 -1 8 1252 204 40 0 0 chr12 87431105 87431130 -33826400 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 8 1252 802 253 17 114 chr12 87431193 87431483 -33826047 - B4A SINE B4 -30 262 1 8 1252 639 78 29 0 chr12 87431626 87431729 -33825801 + (GA)n Simple_repeat Simple_repeat 1 106 0 8 1252 195 42 0 0 chr12 87431989 87432013 -33825517 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1252 232 132 38 0 chr12 87432013 87432066 -33825464 + (CAAA)n Simple_repeat Simple_repeat 4 58 0 8 1252 421 291 36 0 chr12 87433268 87433378 -33824152 + MIR SINE MIR 58 171 -91 8 1252 229 173 39 0 chr12 87433962 87434014 -33823516 + GA-rich Low_complexity Low_complexity 5 58 0 8 1252 739 204 0 8 chr12 87434791 87434924 -33822606 + B1F SINE Alu 1 132 -17 8 1252 267 31 0 0 chr12 87434926 87434958 -33822572 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1252 992 231 74 19 chr12 87435198 87435454 -33822076 - B4A SINE B4 -18 274 5 8 1252 213 188 0 40 chr12 87436273 87436323 -33821207 + CT-rich Low_complexity Low_complexity 2 49 0 8 1252 189 0 0 0 chr12 87436408 87436429 -33821101 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1252 494 280 56 62 chr12 87436437 87436597 -33820933 - RSINE1 SINE B4 -4 161 3 8 1252 208 217 0 32 chr12 87436597 87436659 -33820871 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1252 2276 178 11 48 chr12 87436957 87437196 -33820334 - MTC LTR MaLR 0 421 181 8 1252 1375 70 49 0 chr12 87437196 87437356 -33820174 + B2_Mm2 SINE B2 2 161 -34 8 1252 369 0 0 0 chr12 87437356 87437397 -33820133 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 8 1252 1375 70 49 0 chr12 87437397 87437421 -33820109 + B2_Mm2 SINE B2 162 194 -1 8 1252 2276 178 11 48 chr12 87437421 87437618 -33819912 - MTC LTR MaLR -241 180 1 8 1252 275 297 43 21 chr12 87437628 87437769 -33819761 - L2 LINE L2 -535 2884 2741 8 1252 1289 220 160 43 chr12 87438128 87438503 -33819027 - MTD LTR MaLR 0 419 1 8 1252 183 236 95 27 chr12 87438658 87438732 -33818798 - L2 LINE L2 -2900 519 441 8 1252 336 381 47 23 chr12 87438986 87439201 -33818329 - L1MEg LINE L1 -4223 1977 1758 8 1252 285 261 22 11 chr12 87439339 87439428 -33818102 - L1MEg LINE L1 -4651 1549 1460 8 1252 533 299 0 14 chr12 87439458 87439604 -33817926 + B1F2 SINE Alu 1 144 -5 9 1252 364 336 8 40 chr12 87439748 87439872 -33817658 - L1MEg LINE L1 -4879 1321 1202 8 1252 445 189 120 22 chr12 87439874 87439966 -33817564 - 5S rRNA rRNA -20 101 1 9 1252 270 0 0 0 chr12 87440097 87440127 -33817403 + (TATG)n Simple_repeat Simple_repeat 2 31 0 9 1252 1201 45 13 13 chr12 87440132 87440289 -33817241 - B2_Mm2 SINE B2 -38 157 1 9 1252 261 245 104 0 chr12 87440337 87440443 -33817087 - L1MEg LINE L1 -5178 1022 906 8 1252 563 229 51 31 chr12 87440555 87440752 -33816778 - B3 SINE B2 -1 215 16 9 1252 280 224 153 0 chr12 87440962 87441047 -33816483 + B3A SINE B2 1 98 -100 9 1252 414 0 0 0 chr12 87441047 87441093 -33816437 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1252 452 271 58 97 chr12 87441184 87441462 -33816068 + Charlie18a DNA MER1_type 70 336 -6 9 1252 244 262 0 111 chr12 87443500 87443590 -33813940 + ID4 SINE ID 1 80 -3 9 1252 269 302 75 29 chr12 87444339 87444513 -33813017 - L1MC5 LINE L1 -528 7433 7252 9 1252 250 59 78 0 chr12 87445720 87445771 -33811759 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 9 1252 186 43 0 0 chr12 87446045 87446068 -33811462 + (TGAG)n Simple_repeat Simple_repeat 1 23 0 9 1252 209 179 0 0 chr12 87446543 87446582 -33810948 + C-rich Low_complexity Low_complexity 1 39 0 9 1252 958 276 56 32 chr12 87447031 87447372 -33810158 + MTEb LTR MaLR 20 368 -11 9 1252 1070 179 56 9 chr12 87448359 87448573 -33808957 - URR1A DNA MER1_type 0 226 3 9 1252 344 295 50 14 chr12 87448823 87448964 -33808566 - MER102b DNA MER1_type -149 192 47 9 1252 251 190 17 0 chr12 87449094 87449152 -33808378 + CT-rich Low_complexity Low_complexity 2 60 0 9 1252 1135 74 0 0 chr12 87449153 87449301 -33808229 - B1_Mus1 SINE Alu 0 148 1 9 1252 436 281 62 57 chr12 87449400 87449611 -33807919 - B4A SINE B4 -46 246 35 9 1252 328 264 99 0 chr12 87449606 87449697 -33807833 - PB1D10 SINE Alu -16 101 2 9 1252 387 273 57 0 chr12 87449987 87450075 -33807455 - B1F1 SINE Alu -51 98 6 9 1252 350 348 92 24 chr12 87450686 87450892 -33806638 + MER58A DNA MER1_type 1 220 -4 9 1252 1040 167 9 67 chr12 87451648 87451872 -33805658 + B3 SINE B2 2 212 -4 9 1252 758 254 142 24 chr12 87451928 87452174 -33805356 + B4A SINE B4 3 277 -15 9 1252 315 239 0 0 chr12 87452259 87452326 -33805204 + ID4_ SINE ID 5 71 -12 9 1252 334 337 54 40 chr12 87452762 87453040 -33804490 - L1MB8 LINE L1 -45 6133 5852 9 1252 248 338 61 20 chr12 87453514 87453662 -33803868 + MIR SINE MIR 53 206 -56 9 1252 3112 63 2 0 chr12 87453783 87454182 -33803348 + MTB LTR MaLR 1 400 0 9 1252 699 229 124 5 chr12 87454238 87454431 -33803099 - ID_B1 SINE B4 -4 220 5 9 1252 377 210 12 0 chr12 87454721 87454802 -33802728 + ID4 SINE ID 2 83 0 9 1252 207 0 0 0 chr12 87455115 87455138 -33802392 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 9 1252 252 0 0 0 chr12 87455151 87455179 -33802351 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 9 1252 396 294 36 18 chr12 87455179 87455282 -33802248 - PB1D7 SINE Alu -13 107 1 9 1252 275 292 33 11 chr12 87456181 87456271 -33801259 - MLT1A0 LTR MaLR -242 123 32 9 1252 463 331 40 78 chr12 87457835 87458235 -33799295 - L1MC5 LINE L1 -246 7715 7331 9 1252 501 322 0 0 chr12 87458757 87459027 -33798503 + (TG)n Simple_repeat Simple_repeat 1 270 0 9 1252 376 350 0 0 chr12 87459049 87459226 -33798304 + (TG)n Simple_repeat Simple_repeat 2 178 0 9 1252 407 349 0 0 chr12 87459250 87459425 -33798105 + (TG)n Simple_repeat Simple_repeat 1 175 0 9 1252 285 51 0 0 chr12 87459977 87460016 -33797514 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1252 267 211 0 0 chr12 87460117 87460207 -33797323 + CT-rich Low_complexity Low_complexity 2 91 0 9 1252 1784 234 102 14 chr12 87460293 87460792 -33796738 - RMER15 LTR ERVL 0 575 33 9 1252 3149 36 5 0 chr12 87460939 87461331 -33796199 + L1Md_T LINE L1 6187 6580 -2 9 1252 21 57 0 0 chr12 87461371 87461406 -33796124 + AT_rich Low_complexity Low_complexity 1 35 0 9 1252 306 277 69 10 chr12 87461466 87461568 -33795962 + PB1D10 SINE Alu 2 109 -8 9 1252 889 129 234 0 chr12 87462173 87462344 -33795186 + B3 SINE B2 5 215 -1 9 1252 347 151 114 34 chr12 87462432 87462525 -33795005 - B1F SINE Alu 0 149 25 9 1252 466 16 0 31 chr12 87462525 87462590 -33794940 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 1252 361 326 104 0 chr12 87464082 87464226 -33793304 + Tigger5 DNA MER2_type 80 238 -2168 9 1252 457 167 0 38 chr12 87464322 87464453 -33793077 + (TA)n Simple_repeat Simple_repeat 1 126 0 9 1252 1229 96 21 5 chr12 87464529 87464718 -33792812 - B2_Mm1t SINE B2 -1 192 1 9 1252 186 274 189 14 chr12 87465472 87465546 -33791984 + MIR3 SINE MIR 78 164 -44 9 1252 744 255 37 11 chr12 87465554 87465744 -33791786 + B4A SINE B4 8 202 -90 9 1252 288 241 0 0 chr12 87466046 87466104 -33791426 + ID4 SINE ID 3 60 -23 9 1252 255 103 0 0 chr12 87466135 87466174 -33791356 + (CACG)n Simple_repeat Simple_repeat 1 39 0 9 1252 222 225 0 0 chr12 87466493 87466573 -33790957 + (TG)n Simple_repeat Simple_repeat 2 81 0 9 1252 555 211 0 0 chr12 87466585 87466819 -33790711 + (TG)n Simple_repeat Simple_repeat 1 234 0 9 1252 795 285 33 89 chr12 87466836 87467140 -33790390 - MER21B LTR ERV1 -113 750 464 9 1252 561 192 195 24 chr12 87467158 87467281 -33790249 + B1_Mur1 SINE Alu 1 144 -5 9 1252 387 0 0 0 chr12 87467303 87467346 -33790184 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1252 300 294 0 86 chr12 87467347 87467440 -33790090 - RSINE1 SINE B4 -18 147 63 9 1252 392 310 80 129 chr12 87467582 87467893 -33789637 - MER21B LTR ERV1 -530 333 38 9 1252 1270 97 16 0 chr12 87468509 87468695 -33788835 - B2_Mm2 SINE B2 -6 189 1 9 1252 282 354 7 44 chr12 87468852 87468988 -33788542 + ID_B1 SINE B4 70 200 -24 9 1252 423 267 32 40 chr12 87468870 87468995 -33788535 + B1F SINE Alu 6 129 -20 9 1252 181 341 11 34 chr12 87469770 87469858 -33787672 - MIRb SINE MIR -44 224 139 9 1252 369 325 126 50 chr12 87469910 87470211 -33787319 - MLT1A0 LTR MaLR 0 365 42 9 1252 199 333 0 0 chr12 87470772 87470832 -33786698 - L3 LINE CR1 -2 4487 4428 9 1252 1913 86 190 12 chr12 87471745 87472076 -33785454 - RLTR10 LTR ERVK 0 390 1 9 1252 426 241 9 36 chr12 87472128 87472240 -33785290 + PB1D10 SINE Alu 9 117 0 9 1252 341 300 88 42 chr12 87472395 87472635 -33784895 + MER113 DNA MER1_type 110 360 -161 9 1252 1103 71 137 0 chr12 87473482 87473650 -33783880 + B2_Mm2 SINE B2 2 192 -3 9 1252 736 169 88 0 chr12 87474570 87474706 -33782824 - B1_Mur1 SINE Alu 0 149 2 9 1252 267 103 0 0 chr12 87475653 87475692 -33781838 + (CCCCCA)n Simple_repeat Simple_repeat 5 43 0 9 1252 218 343 50 28 chr12 87475871 87476012 -33781518 + MIR SINE MIR 13 156 -106 9 1252 419 200 10 59 chr12 87477637 87477738 -33779792 - URR1B DNA MER1_type 0 225 130 9 1252 347 250 85 55 chr12 87477811 87477855 -33779675 + ID_B1 SINE B4 54 221 -1 9 1252 692 126 67 0 chr12 87477855 87477974 -33779556 + B1_Mus1 SINE Alu 22 148 0 9 1252 402 259 120 15 chr12 87477983 87478115 -33779415 + B4A SINE B4 83 228 -64 9 1252 503 244 0 45 chr12 87478115 87478248 -33779282 + B1_Mur1 SINE Alu 2 128 -21 9 1252 274 320 78 113 chr12 87478116 87478320 -33779210 + B4A SINE B4 89 285 -7 9 1252 219 146 0 0 chr12 87478356 87478397 -33779133 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1252 4024 137 25 82 chr12 87478405 87479403 -33778127 + RMER17A2 LTR ERVK 1 948 -10 9 1252 242 182 15 0 chr12 87479474 87479540 -33777990 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1252 204 40 0 0 chr12 87479704 87479729 -33777801 + (TC)n Simple_repeat Simple_repeat 2 26 0 9 1252 608 251 110 0 chr12 87479881 87480072 -33777458 + B3 SINE B2 2 213 -3 9 1252 2002 88 96 15 chr12 87480555 87480890 -33776640 - MTC LTR MaLR -8 413 52 9 1252 198 150 0 0 chr12 87481307 87481347 -33776183 + (C)n Simple_repeat Simple_repeat 1 40 0 9 1252 183 317 0 0 chr12 87481883 87481943 -33775587 - MIR3 SINE MIR -38 170 111 9 1252 180 0 0 0 chr12 87482092 87482112 -33775418 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 1252 304 333 0 11 chr12 87482113 87482201 -33775329 - PB1D10 SINE Alu -12 105 19 9 1252 366 147 0 0 chr12 87482268 87482336 -33775194 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1252 276 30 0 0 chr12 87482389 87482422 -33775108 + (T)n Simple_repeat Simple_repeat 1 33 0 9 1252 1207 27 0 0 chr12 87482422 87482568 -33774962 - B1_Mm SINE Alu 0 147 2 9 1252 362 333 132 14 chr12 87482569 87482671 -33774859 - B4A SINE B4 -42 250 137 9 1252 180 0 0 0 chr12 87482671 87482691 -33774839 + (CCCTG)n Simple_repeat Simple_repeat 5 24 0 9 1252 362 333 132 14 chr12 87482691 87482807 -33774723 - B4A SINE B4 -156 136 8 9 1252 369 250 150 25 chr12 87483069 87483229 -33774301 - L1ME1 LINE L1 -250 5929 5750 9 1252 333 274 68 68 chr12 87483671 87483804 -33773726 - MIRb SINE MIR -109 159 27 9 1252 231 316 0 12 chr12 87485190 87485270 -33772260 - ID4_ SINE ID -4 79 1 9 1252 957 309 99 24 chr12 87486142 87486308 -33771222 - L1MA6 LINE L1 -362 5938 5736 9 1252 6540 45 57 5 chr12 87486308 87486699 -33770831 - RLTR13B1 LTR ERVK 0 893 462 9 1252 513 32 0 0 chr12 87486699 87486762 -33770768 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1252 6540 45 57 5 chr12 87486762 87487219 -33770311 - RLTR13B1 LTR ERVK -432 461 1 9 1252 957 290 110 30 chr12 87487219 87487818 -33769712 - L1MA6 LINE L1 -145 5735 5089 9 1252 984 121 23 29 chr12 87487832 87488003 -33769527 - B2_Mm2 SINE B2 -14 181 12 9 1252 205 278 135 111 chr12 87488158 87488456 -33769074 - L2b LINE L2 -2 3385 3083 9 1252 1006 266 48 7 chr12 87488658 87488931 -33768599 + B4A SINE B4 4 287 -5 9 1252 622 113 31 0 chr12 87489755 87489852 -33767678 + B1_Mus2 SINE Alu 43 142 -5 1 1252 434 146 12 0 chr12 87489852 87489934 -33767596 + GA-rich Low_complexity Low_complexity 2 84 0 1 1252 990 243 101 79 chr12 87490739 87491105 -33766425 + MTE2b LTR MaLR 1 374 -5 1 1252 241 355 11 11 chr12 87491109 87491203 -33766327 - MTEb LTR MaLR -7 372 279 1 1252 227 73 49 0 chr12 87491298 87491339 -33766191 + (CAGA)n Simple_repeat Simple_repeat 1 43 0 1 1252 413 326 128 51 chr12 87491399 87491712 -33765818 - ORR1E LTR MaLR -33 337 1 1 1252 27 0 0 0 chr12 87493248 87493275 -33764255 + AT_rich Low_complexity Low_complexity 1 27 0 1 1252 470 255 19 0 chr12 87495511 87495617 -33761913 + PB1D7 SINE Alu 12 119 -1 1 1252 348 24 0 0 chr12 87496061 87496102 -33761428 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1252 294 29 0 0 chr12 87496102 87496136 -33761394 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1252 181 176 132 38 chr12 87496329 87496382 -33761148 + L3 LINE CR1 5 62 -4427 1 1252 196 408 23 8 chr12 87497468 87497599 -33759931 + L2b LINE L2 3226 3358 -17 1 1252 418 303 140 17 chr12 87498529 87498707 -33758823 - MIRb SINE MIR -66 202 3 1 1252 240 342 13 0 chr12 87498797 87498876 -33758654 + ID2 SINE ID 3 82 -1 1 1252 301 93 37 0 chr12 87498985 87499039 -33758491 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1252 238 239 0 0 chr12 87499075 87499121 -33758409 - B4A SINE B4 -20 272 227 1 1252 373 182 291 8 chr12 87499225 87499352 -33758178 + B3 SINE B2 1 163 -53 1 1252 515 193 7 33 chr12 87499389 87499539 -33757991 + CT-rich Low_complexity Low_complexity 3 148 0 1 1252 207 0 0 0 chr12 87500991 87501014 -33756516 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1 1252 2286 94 35 0 chr12 87501556 87501874 -33755656 - ORR1A4 LTR MaLR 0 329 1 2 1252 182 276 17 0 chr12 87503132 87503190 -33754340 + L2b LINE L2 3270 3328 -47 3 1252 435 308 18 11 chr12 87503488 87503617 -33753913 - PB1D10 SINE Alu -21 127 2 4 1252 825 241 12 17 chr12 87505037 87505112 -33752418 + ID SINE ID 5 78 -146 5 1252 313 333 0 64 chr12 87505112 87505237 -33752293 + PB1D10 SINE Alu 1 117 0 6 1252 258 32 0 0 chr12 87505506 87505537 -33751993 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 7 1252 229 229 0 0 chr12 87505832 87505880 -33751650 + RLTR13C2 LTR ERVK 423 470 -338 8 1252 2049 144 45 73 chr12 87505855 87506251 -33751279 + RLTR41 LTR ERV1 62 446 0 9 1252 198 67 21 43 chr12 87506768 87506815 -33750715 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 1 1252 718 33 11 0 chr12 87506819 87506909 -33750621 - B1_Mus2 SINE Alu 0 147 57 1 1252 554 355 42 9 chr12 87507406 87507622 -33749908 + MER58A DNA MER1_type 1 223 -1 1 1252 181 194 0 0 chr12 87507668 87507704 -33749826 + L3b LINE CR1 239 274 -208 1 1252 180 0 0 0 chr12 87507844 87507864 -33749666 + (TGGGGG)n Simple_repeat Simple_repeat 6 25 0 1 1252 192 77 0 0 chr12 87507944 87507970 -33749560 + (TGGG)n Simple_repeat Simple_repeat 1 26 0 1 1252 254 321 63 45 chr12 87508790 87508901 -33748629 + MER102b DNA MER1_type 4 116 -225 1 1252 1318 129 9 40 chr12 87509602 87509828 -33747702 - URR1B DNA MER1_type 0 225 7 1 1252 327 270 133 57 chr12 87509866 87510140 -33747390 + LTR16B1 LTR ERVL 140 448 -32 1 1252 183 292 28 111 chr12 87511391 87511499 -33746031 - L2b LINE L2 -157 3218 3120 1 1252 1289 74 74 0 chr12 87511509 87511684 -33745846 - B2_Mm2 SINE B2 -7 188 1 2 1252 906 239 41 1 chr12 87511824 87512042 -33745488 - ID_B1 SINE B4 -44 248 13 2 1252 216 0 0 0 chr12 87513054 87513078 -33744452 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 2 1252 342 115 0 0 chr12 87513836 87513888 -33743642 + (A)n Simple_repeat Simple_repeat 1 52 0 2 1252 245 304 0 25 chr12 87514933 87515014 -33742516 + CT-rich Low_complexity Low_complexity 6 84 0 2 1252 315 0 0 0 chr12 87515281 87515316 -33742214 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1252 504 330 21 26 chr12 87515829 87516022 -33741508 - MIRb SINE MIR -9 259 68 2 1252 261 0 0 0 chr12 87516898 87516927 -33740603 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1252 368 311 0 40 chr12 87517200 87517324 -33740206 + B1F SINE Alu 4 122 -27 2 1252 1468 59 32 0 chr12 87517461 87517647 -33739883 + B2_Mm1t SINE B2 1 192 -1 2 1252 1177 251 58 87 chr12 87517753 87518132 -33739398 + MLT1B LTR MaLR 2 369 -21 3 1252 317 286 0 13 chr12 87518400 87518478 -33739052 + RSINE1 SINE B4 1 77 -88 3 1252 609 181 17 5 chr12 87518616 87519030 -33738500 + (CA)n Simple_repeat Simple_repeat 1 419 0 3 1252 215 325 71 30 chr12 87519469 87519637 -33737893 - MIRb SINE MIR -30 238 64 3 1252 281 192 14 0 chr12 87519637 87519694 -33737836 + CT-rich Low_complexity Low_complexity 19 76 0 3 1252 1137 83 14 0 chr12 87519694 87519839 -33737691 - B1_Mus1 SINE Alu 0 148 2 3 1252 281 192 14 0 chr12 87519839 87519854 -33737676 + polypyrimidine Low_complexity Low_complexity 4 18 0 3 1252 303 83 342 100 chr12 87519856 87519976 -33737554 - B2_Mm2 SINE B2 0 195 47 3 1252 917 113 127 0 chr12 87520027 87520177 -33737353 - B2_Mm1t SINE B2 -22 171 3 3 1252 482 329 91 28 chr12 87520229 87520548 -33736982 + MER58B DNA MER1_type 3 341 0 3 1252 205 29 59 0 chr12 87521106 87521140 -33736390 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1252 198 71 0 0 chr12 87521178 87521206 -33736324 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1252 420 77 0 0 chr12 87521544 87521609 -33735921 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1252 713 181 6 17 chr12 87521848 87522028 -33735502 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1252 346 271 58 98 chr12 87522770 87522946 -33734584 - MIRb SINE MIR -41 167 3 4 1252 1704 155 86 98 chr12 87522969 87523355 -33734175 + ORR1B1 LTR MaLR 1 381 -13 4 1252 208 319 94 113 chr12 87523375 87523693 -33733837 + L2a LINE L2 1976 2287 -1132 4 1252 263 314 0 0 chr12 87523903 87523973 -33733557 + L2a LINE L2 3011 3080 -339 4 1252 1662 27 0 5 chr12 87523977 87524166 -33733364 - B2_Mm1a SINE B2 -5 188 1 4 1252 181 356 16 25 chr12 87524281 87524402 -33733128 + L2a LINE L2 3255 3374 -52 4 1252 328 111 16 16 chr12 87524723 87524787 -33732743 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1252 455 204 48 96 chr12 87525868 87525993 -33731537 + PB1D9 SINE Alu 2 120 0 4 1252 228 38 34 102 chr12 87525995 87526054 -33731476 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 1252 272 247 156 0 chr12 87526098 87526175 -33731355 - MTE2b LTR MaLR -35 344 256 5 1252 882 260 136 52 chr12 87526230 87526538 -33730992 - MT2B LTR ERVL 0 601 268 5 1252 957 98 8 0 chr12 87526583 87526716 -33730814 + B1_Mus2 SINE Alu 13 146 -1 5 1252 362 268 40 53 chr12 87526584 87526734 -33730796 + B4A SINE B4 99 246 -46 5 1252 384 119 0 0 chr12 87526734 87526793 -33730737 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 5 1252 1225 61 0 0 chr12 87526810 87526957 -33730573 + B1_Mus1 SINE Alu 2 148 0 5 1252 843 78 0 0 chr12 87526968 87527084 -33730446 + (GGA)n Simple_repeat Simple_repeat 2 117 0 5 1252 559 230 103 26 chr12 87527272 87527428 -33730102 - MTE2b LTR MaLR -209 170 3 5 1252 222 240 183 55 chr12 87529016 87529131 -33728399 + MIRm SINE MIR 35 153 -109 5 1252 329 307 11 11 chr12 87529618 87529707 -33727823 + MLT1I LTR MaLR 307 395 -16 5 1252 240 242 29 43 chr12 87529765 87529834 -33727696 - MER5A DNA MER1_type -26 163 96 6 1252 262 239 14 27 chr12 87529785 87529858 -33727672 + MER5A1 DNA MER1_type 55 126 -40 6 1252 224 312 30 46 chr12 87530754 87530885 -33726645 + MIRb SINE MIR 34 162 -106 6 1252 387 275 18 0 chr12 87530969 87531078 -33726452 - MER5A1 DNA MER1_type -55 111 1 6 1252 225 0 0 0 chr12 87531618 87531643 -33725887 + (TATG)n Simple_repeat Simple_repeat 1 25 0 6 1252 314 179 48 11 chr12 87531646 87531732 -33725798 - PB1D10 SINE Alu -17 103 12 6 1252 254 302 0 85 chr12 87531668 87531762 -33725768 - ID_B1 SINE B4 -70 154 69 6 1252 2653 129 37 12 chr12 87531764 87532173 -33725357 - MTC LTR MaLR 0 421 3 6 1252 183 42 0 0 chr12 87533993 87534017 -33723513 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1252 808 247 133 46 chr12 87534074 87534337 -33723193 + B4A SINE B4 7 292 0 6 1252 342 287 43 117 chr12 87534382 87534544 -33722986 + B4 SINE B4 71 220 -72 7 1252 924 127 0 40 chr12 87534401 87534549 -33722981 + B1_Mus1 SINE Alu 6 147 -1 7 1252 405 0 0 0 chr12 87534549 87534594 -33722936 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 7 1252 492 156 82 10 chr12 87534616 87534713 -33722817 + MT2A LTR ERVL 1 104 -429 7 1252 1512 148 255 0 chr12 87534713 87535061 -33722469 + MERVL_2A-int LTR ERVL 2794 3230 -2531 7 1252 2302 130 20 0 chr12 87535033 87535386 -33722144 + MERVL_2A-int LTR ERVL 3341 3700 -2061 7 1252 3292 137 11 109 chr12 87535382 87536089 -33721441 + MERVL_2A-int LTR ERVL 5124 5761 0 7 1252 943 178 281 166 chr12 87536089 87536512 -33721018 + MT2A LTR ERVL 1 472 -61 7 1252 50 65 0 0 chr12 87536514 87536606 -33720924 + AT_rich Low_complexity Low_complexity 1 92 0 7 1252 425 308 88 0 chr12 87536758 87536917 -33720613 - MER119 DNA MER1_type -264 319 147 7 1252 2064 336 49 78 chr12 87536962 87537655 -33719875 + Lx8 LINE L1 6190 6895 -578 7 1252 1200 62 7 0 chr12 87537655 87537801 -33719729 + B1_Mus1 SINE Alu 2 148 0 7 1252 2064 336 49 78 chr12 87537801 87538318 -33719212 + Lx8 LINE L1 6896 7364 -109 7 1252 269 311 11 53 chr12 87538460 87538555 -33718975 - MER119 DNA MER1_type -402 181 91 7 1252 334 290 50 0 chr12 87538578 87538678 -33718852 + MIR3 SINE MIR 74 178 -30 7 1252 575 322 29 25 chr12 87538682 87538886 -33718644 - MER20 DNA MER1_type -8 211 7 8 1252 358 255 36 54 chr12 87538933 87539028 -33718502 + ORR1E LTR MaLR 3 95 -264 8 1252 1249 131 87 0 chr12 87539028 87539234 -33718296 - URR1A DNA MER1_type 0 226 3 8 1252 256 354 20 10 chr12 87539236 87539336 -33718194 + ORR1E LTR MaLR 94 194 -165 8 1252 305 262 88 51 chr12 87539699 87539836 -33717694 + MLT1J LTR MaLR 270 411 -101 8 1252 1027 201 33 38 chr12 87539927 87540139 -33717391 - ID_B1 SINE B4 -12 212 2 8 1252 2665 135 2 5 chr12 87540376 87540770 -33716760 + ORR1B1 LTR MaLR 1 393 -1 8 1252 2527 244 17 22 chr12 87540966 87541561 -33715969 - Lx5 LINE L1 -9 7041 6450 8 1252 262 250 64 26 chr12 87541721 87541799 -33715731 - MIR SINE MIR -34 228 148 8 1252 327 267 86 1 chr12 87542055 87542150 -33715380 + B1F SINE Alu 3 105 -43 8 1252 429 333 94 22 chr12 87542410 87542634 -33714896 + MLT1K LTR MaLR 31 270 -325 8 1252 331 290 61 61 chr12 87542733 87542880 -33714650 - RSINE1 SINE B4 -16 149 3 9 1252 396 0 0 0 chr12 87543266 87543310 -33714220 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1252 315 104 0 0 chr12 87545309 87545357 -33712173 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1252 237 350 66 8 chr12 87545424 87545545 -33711985 + MLT1K LTR MaLR 442 569 -22 8 1252 660 207 33 167 chr12 87545739 87545954 -33711576 - MTD LTR MaLR 0 419 234 9 1252 1170 150 95 0 chr12 87545957 87546157 -33711373 + URR1A DNA MER1_type 3 221 -5 9 1252 1157 206 28 81 chr12 87546114 87546399 -33711131 - MTD LTR MaLR -149 270 1 9 1252 1157 76 7 0 chr12 87546488 87546632 -33710898 - B1_Mus1 SINE Alu -1 147 3 9 1252 22 0 0 0 chr12 87546671 87546693 -33710837 + AT_rich Low_complexity Low_complexity 1 22 0 9 1252 225 300 45 91 chr12 87546759 87546881 -33710649 + LTR88c LTR Genie? 150 265 -597 9 1252 198 0 0 0 chr12 87546881 87546903 -33710627 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1252 620 257 132 0 chr12 87546907 87547059 -33710471 - B4 SINE B4 -18 274 103 9 1252 371 388 23 6 chr12 87547388 87547559 -33709971 + MIR SINE MIR 34 207 -55 1 1252 539 317 90 0 chr12 87547565 87547732 -33709798 + B3A SINE B2 1 182 -16 1 1252 293 260 56 103 chr12 87547762 87547869 -33709661 + MT2B LTR ERVL 152 253 -348 1 1252 557 214 19 9 chr12 87547777 87547907 -33709623 + B1_Mur2 SINE Alu 9 149 0 1 1252 24 85 0 0 chr12 87548042 87548101 -33709429 + AT_rich Low_complexity Low_complexity 1 59 0 1 1252 627 60 0 0 chr12 87548101 87548185 -33709345 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1252 267 209 0 0 chr12 87548186 87548229 -33709301 - RSINE1 SINE B4 -41 124 82 1 1252 505 331 105 57 chr12 87548445 87548759 -33708771 - MLT1A0 LTR MaLR -4 361 33 1 1252 696 231 258 11 chr12 87549123 87549506 -33708024 - MER90 LTR ERV1 -138 437 1 1 1252 571 302 44 16 chr12 87550264 87550446 -33707084 + MER63A DNA AcHobo 19 205 -5 1 1252 945 136 0 0 chr12 87550448 87550602 -33706928 + (GA)n Simple_repeat Simple_repeat 1 154 0 1 1252 1094 191 53 0 chr12 87551100 87551309 -33706221 - URR1A DNA MER1_type -2 224 5 1 1252 237 196 0 0 chr12 87551890 87551941 -33705589 + GA-rich Low_complexity Low_complexity 2 52 0 1 1252 246 246 77 0 chr12 87552921 87552986 -33704544 + ID SINE ID 5 74 -150 1 1252 396 0 0 0 chr12 87553257 87553301 -33704229 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1252 563 248 0 17 chr12 87553445 87553560 -33703970 - PB1D10 SINE Alu 0 117 5 1 1252 354 23 0 0 chr12 87553976 87554019 -33703511 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1252 582 54 0 0 chr12 87555699 87555773 -33701757 + (TTTCC)n Simple_repeat Simple_repeat 4 77 0 1 1253 539 239 11 0 chr12 87556764 87556940 -33700590 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 1 1253 258 32 0 0 chr12 87557318 87557349 -33700181 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1253 205 151 19 19 chr12 87557758 87557812 -33699718 + C-rich Low_complexity Low_complexity 3 56 0 1 1253 3438 117 4 0 chr12 87558417 87558921 -33698609 - L1_Mus3 LINE L1 -328 5555 5050 1 1253 8190 61 23 0 chr12 87558921 87559983 -33697547 + L1_Mus3 LINE L1 5552 6637 -1 1 1253 272 282 30 155 chr12 87560007 87560175 -33697355 + MIR SINE MIR 46 192 -70 1 1253 529 129 17 0 chr12 87560359 87560475 -33697055 + (GA)n Simple_repeat Simple_repeat 2 119 0 1 1253 347 304 65 15 chr12 87560475 87560659 -33696871 - ORR1E LTR MaLR -190 194 2 1 1253 188 298 0 0 chr12 87560667 87560714 -33696816 + MIR SINE MIR 206 252 -10 1 1253 814 231 12 17 chr12 87560977 87561149 -33696381 - B3 SINE B2 -1 215 45 1 1253 226 358 58 36 chr12 87562803 87562942 -33694588 + MLT1H LTR MaLR 371 512 -37 1 1253 599 286 0 99 chr12 87562964 87563135 -33694395 - RSINE1 SINE B4 -3 162 9 1 1253 383 235 180 22 chr12 87563305 87563444 -33694086 - RSINE1 SINE B4 -2 163 3 1 1253 373 153 0 111 chr12 87563629 87563710 -33693820 - B3 SINE B2 -144 72 1 1 1253 1329 75 37 11 chr12 87563902 87564091 -33693439 + B2_Mm2 SINE B2 2 195 0 1 1253 766 158 28 21 chr12 87564232 87564374 -33693156 + B1_Mur3 SINE Alu 1 143 -6 1 1253 242 0 61 0 chr12 87564376 87564409 -33693121 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1253 317 305 25 17 chr12 87564706 87564738 -33692792 + polypurine Low_complexity Low_complexity 3 35 0 1 1253 828 169 0 84 chr12 87564738 87564893 -33692637 + B1_Mus2 SINE Alu 4 145 -2 1 1253 317 305 25 17 chr12 87564893 87564980 -33692550 + polypurine Low_complexity Low_complexity 36 123 0 1 1253 871 250 5 54 chr12 87564982 87565185 -33692345 + B3A SINE B2 1 193 -5 1 1253 480 169 130 99 chr12 87565205 87565336 -33692194 + B1_Mus2 SINE Alu 1 135 -12 1 1253 21 0 0 0 chr12 87565354 87565375 -33692155 + AT_rich Low_complexity Low_complexity 1 21 0 1 1253 452 288 86 0 chr12 87565431 87565570 -33691960 - Tigger5 DNA MER2_type -12 2394 2244 1 1253 1945 172 79 30 chr12 87565674 87566081 -33691449 + RMER16 LTR ERVK 107 533 0 1 1253 577 252 8 0 chr12 87566081 87566205 -33691325 - Tigger5 DNA MER2_type -148 2258 2134 1 1253 257 292 102 80 chr12 87566303 87566444 -33691086 + L1MEf LINE L1 1311 1451 -4949 1 1253 1290 109 5 30 chr12 87566444 87566642 -33690888 + B2_Mm2 SINE B2 2 194 -1 1 1253 257 292 102 80 chr12 87566642 87566692 -33690838 + L1MEf LINE L1 1452 1493 -4907 1 1253 594 236 169 0 chr12 87566692 87566870 -33690660 + B3 SINE B2 2 209 -7 1 1253 383 292 102 80 chr12 87566870 87567351 -33690179 + L1MEf LINE L1 1494 1998 -4402 1 1253 268 333 0 0 chr12 87567421 87567496 -33690034 + (CCA)n Simple_repeat Simple_repeat 1 75 0 1 1253 1092 71 7 0 chr12 87567611 87567752 -33689778 - B1_Mus2 SINE Alu 0 147 6 1 1253 1142 177 14 19 chr12 87567932 87568139 -33689391 - B3 SINE B2 -9 207 2 1 1253 700 321 58 77 chr12 87568207 87568571 -33688959 - ORR1E LTR MaLR 0 359 3 1 1253 312 291 67 13 chr12 87568588 87568738 -33688792 + L1MEf LINE L1 2023 2180 -4220 1 1253 197 194 108 46 chr12 87568811 87568844 -33688686 + MIR SINE MIR 119 156 -106 1 1253 1173 122 153 0 chr12 87568844 87569040 -33688490 + URR1A DNA MER1_type 1 226 0 1 1253 197 194 108 46 chr12 87569040 87569071 -33688459 + MIR SINE MIR 157 187 -75 1 1253 249 284 171 16 chr12 87569211 87569340 -33688190 + MIR SINE MIR 1 149 -113 1 1253 494 227 10 0 chr12 87569343 87569440 -33688090 + RSINE1 SINE B4 3 100 -65 1 1253 602 224 238 13 chr12 87569793 87570028 -33687502 + B4 SINE B4 1 288 -4 1 1253 214 167 0 0 chr12 87570034 87570070 -33687460 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1253 2340 152 36 24 chr12 87570544 87570963 -33686567 - RMER1B Other Other -2 1064 641 1 1253 1972 138 89 6 chr12 87571167 87571494 -33686036 - ORR1B1 LTR MaLR -8 386 33 1 1253 492 128 0 0 chr12 87571792 87571870 -33685660 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 1 1253 543 280 37 83 chr12 87572496 87572714 -33684816 + MLT1B LTR MaLR 51 258 -132 1 1253 196 154 39 0 chr12 87572787 87572839 -33684691 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 1 1253 434 296 73 7 chr12 87572839 87572975 -33684555 + MLT1B LTR MaLR 238 382 -8 1 1253 303 281 41 20 chr12 87573096 87573194 -33684336 + MIRm SINE MIR 38 137 -139 1 1253 642 182 112 15 chr12 87573301 87573435 -33684095 + B1F2 SINE Alu 1 147 -2 1 1253 498 363 71 25 chr12 87573457 87573537 -33683993 + MLT1D LTR MaLR 106 189 -316 1 1253 180 0 0 0 chr12 87573537 87573557 -33683973 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 1 1253 498 363 71 25 chr12 87573557 87573801 -33683729 + MLT1D LTR MaLR 190 445 -60 1 1253 468 297 120 60 chr12 87573855 87574138 -33683392 - RMER15 LTR ERVL 0 575 276 1 1253 233 227 25 170 chr12 87574137 87574296 -33683234 - RMER15 LTR ERVL -414 161 26 1 1253 465 103 0 0 chr12 87574713 87574781 -33682749 + (GGA)n Simple_repeat Simple_repeat 3 70 0 1 1253 659 274 109 5 chr12 87574985 87575187 -33682343 - ID_B1 SINE B4 0 224 2 1 1253 198 0 0 0 chr12 87575303 87575325 -33682205 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1253 472 268 60 82 chr12 87575930 87575969 -33681561 + B4 SINE B4 51 224 -63 1 1253 841 126 7 29 chr12 87575969 87576108 -33681422 + B1_Mus1 SINE Alu 12 147 -1 1 1253 416 19 0 19 chr12 87576129 87576183 -33681347 + (GGA)n Simple_repeat Simple_repeat 1 53 0 1 1253 261 83 0 0 chr12 87576673 87576709 -33680821 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1253 717 235 0 0 chr12 87577008 87577144 -33680386 - B1_Mur1 SINE Alu -12 137 2 1 1253 2283 58 3 3 chr12 87577234 87577528 -33680002 - L1_Mus2 LINE L1 0 6566 6273 1 1253 823 199 0 0 chr12 87577632 87577778 -33679752 - B1_Mur1 SINE Alu -3 146 1 1 1253 301 258 15 0 chr12 87577827 87577838 -33679692 - ID4 SINE ID 0 83 17 1 1253 322 182 18 0 chr12 87577838 87577893 -33679637 - tRNA-Ala-GCY_ tRNA tRNA -9 66 11 1 1253 1138 132 0 28 chr12 87577978 87578011 -33679519 - B2_Mm2 SINE B2 -19 176 148 1 1253 1164 68 0 7 chr12 87578011 87578159 -33679371 - B1_Mus1 SINE Alu 0 148 2 1 1253 1138 132 0 28 chr12 87578159 87578305 -33679225 - B2_Mm2 SINE B2 -48 147 2 1 1253 381 291 44 26 chr12 87578384 87578497 -33679033 - L1MC3 LINE L1 -2 7783 7669 1 1253 336 102 0 0 chr12 87578509 87578558 -33678972 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 1 1253 2445 196 49 4 chr12 87578559 87579067 -33678463 - Lx5 LINE L1 -1 7049 6519 1 1253 305 203 50 17 chr12 87579067 87579127 -33678403 - L1MC3 LINE L1 -85 7700 7639 1 1253 423 308 39 0 chr12 87579149 87579253 -33678277 - B1F SINE Alu -39 110 3 1 1253 1497 124 0 34 chr12 87579253 87579303 -33678227 - MTC LTR MaLR 0 421 379 1 1253 4788 80 80 1 chr12 87579303 87579966 -33677564 + RLTR19B LTR ERVK 1 715 0 1 1253 1497 124 0 34 chr12 87579966 87580149 -33677381 - MTC LTR MaLR -43 378 196 1 1253 8208 40 5 1 chr12 87580164 87581134 -33676396 - L1Md_F2 LINE L1 0 6582 5609 1 1253 1372 130 30 23 chr12 87581134 87581368 -33676162 - MTC LTR MaLR -211 210 1 1 1253 567 235 65 55 chr12 87581369 87581554 -33675976 - L1MC3 LINE L1 -136 7746 7458 1 1253 4371 73 16 7 chr12 87581554 87582133 -33675397 + MT2B2 LTR ERVL 1 584 0 1 1253 567 228 64 54 chr12 87582133 87582177 -33675353 - L1MC3 LINE L1 -328 7457 7414 1 1253 344 123 138 0 chr12 87582221 87582286 -33675244 - B1_Mus2 SINE Alu -1 146 73 1 1253 301 283 231 21 chr12 87582287 87582525 -33675005 - L1MC3 LINE L1 -559 7226 6939 1 1253 430 138 46 0 chr12 87584216 87584325 -33673205 + (CTA)n Simple_repeat Simple_repeat 3 116 0 1 1253 1166 242 28 21 chr12 87586185 87586472 -33671058 - B4A SINE B4 0 292 4 1 1253 345 100 0 0 chr12 87586525 87586575 -33670955 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1253 223 260 19 57 chr12 87586575 87586628 -33670902 - RSINE1 SINE B4 -99 66 16 1 1253 329 326 160 5 chr12 87586979 87587173 -33670357 - MIRb SINE MIR -16 252 29 1 1253 2653 46 3 0 chr12 87587306 87587629 -33669901 + MTA_Mm LTR MaLR 73 396 0 1 1253 3812 40 44 0 chr12 87587645 87588100 -33669430 - MT2C_Mm LTR ERVL 0 475 1 1 1253 399 270 77 51 chr12 87588811 87588928 -33668602 + B3A SINE B2 1 120 -78 1 1253 285 98 0 0 chr12 87588938 87588979 -33668551 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1253 546 304 7 0 chr12 87589415 87589550 -33667980 + ID_B1 SINE B4 83 218 -6 1 1253 459 222 66 11 chr12 87589793 87589884 -33667646 - PB1D10 SINE Alu -6 111 16 1 1253 515 310 45 13 chr12 87589812 87589969 -33667561 - ID_B1 SINE B4 -57 167 6 1 1253 406 284 96 34 chr12 87591718 87591864 -33665666 + RSINE1 SINE B4 3 157 -8 2 1253 1207 312 121 14 chr12 87592554 87593281 -33664249 + L1MA5A LINE L1 5098 5938 -359 2 1253 1262 89 10 64 chr12 87593301 87593504 -33664026 + B2_Mm2 SINE B2 2 193 -2 2 1253 1048 165 90 5 chr12 87594407 87594596 -33662934 + B3 SINE B2 1 205 -11 2 1253 238 294 47 38 chr12 87594769 87594875 -33662655 - RCHARR1 DNA MER1_type -643 331 225 2 1253 976 82 89 0 chr12 87595140 87595275 -33662255 + B1_Mus2 SINE Alu 1 147 0 2 1253 261 139 0 0 chr12 87595275 87595318 -33662212 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1253 222 217 22 0 chr12 87595381 87595427 -33662103 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1253 303 276 138 29 chr12 87595445 87595583 -33661947 - B4A SINE B4 -14 278 126 2 1253 651 233 0 30 chr12 87596507 87596640 -33660890 + RSINE1 SINE B4 2 130 -35 2 1253 552 256 83 44 chr12 87597274 87597454 -33660076 - MER58B DNA MER1_type -81 260 74 2 1253 798 222 31 21 chr12 87597933 87598126 -33659404 - B3A SINE B2 -3 195 1 2 1253 210 244 139 73 chr12 87598218 87598355 -33659175 + MER5A DNA MER1_type 44 189 0 2 1253 1321 82 55 0 chr12 87598445 87598628 -33658902 - B2_Mm2 SINE B2 0 195 3 2 1253 1199 61 0 0 chr12 87598794 87598941 -33658589 + B1_Mm SINE Alu 1 147 0 2 1253 180 0 0 0 chr12 87598941 87598961 -33658569 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1253 203 250 0 0 chr12 87599028 87599072 -33658458 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1253 933 233 24 15 chr12 87599137 87599342 -33658188 - B3 SINE B2 -9 207 1 2 1253 788 208 86 5 chr12 87599434 87599632 -33657898 - B3 SINE B2 -1 215 2 2 1253 493 187 120 9 chr12 87599923 87600031 -33657499 - PB1D9 SINE Alu 0 120 1 2 1253 183 271 51 0 chr12 87600378 87600437 -33657093 + MER5A DNA MER1_type 122 183 -6 2 1253 253 226 262 9 chr12 87601136 87601243 -33656287 + MIRb SINE MIR 22 155 -113 2 1253 274 275 123 51 chr12 87603164 87603302 -33654228 - B1F SINE Alu 0 149 2 2 1253 600 209 27 9 chr12 87603566 87603677 -33653853 - RSINE1 SINE B4 -45 120 8 2 1253 373 225 0 48 chr12 87604871 87604955 -33652575 - ID4 SINE ID -1 82 3 2 1253 356 319 67 5 chr12 87605098 87605228 -33652302 + PB1D10 SINE Alu 2 142 -7 2 1253 760 237 157 50 chr12 87605414 87605676 -33651854 + B4 SINE B4 3 292 0 2 1253 309 287 123 8 chr12 87606358 87606488 -33651042 + RSINE1 SINE B4 4 148 -17 2 1253 207 0 0 0 chr12 87606627 87606650 -33650880 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2 1253 665 156 53 33 chr12 87606650 87606802 -33650728 - RMER10B LTR ERVL -60 338 184 2 1253 2510 104 26 36 chr12 87606845 87607234 -33650296 + Lx2 LINE L1 6612 6996 -1 2 1253 589 217 230 22 chr12 87607504 87607726 -33649804 + B4A SINE B4 1 268 -24 2 1253 219 260 77 64 chr12 87609147 87609225 -33648305 - MIRb SINE MIR -8 260 182 2 1253 639 171 36 9 chr12 87610882 87610994 -33646536 - B1_Mur2 SINE Alu -1 148 34 2 1253 360 0 0 0 chr12 87611295 87611335 -33646195 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 2 1253 930 289 144 16 chr12 87613267 87613517 -33644013 + B4A SINE B4 8 289 -3 2 1253 279 0 0 0 chr12 87613527 87613558 -33643972 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1253 459 0 0 0 chr12 87613558 87613608 -33643922 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1253 210 373 44 26 chr12 87613655 87613768 -33643762 - MER5B DNA MER1_type -63 115 1 2 1253 198 0 0 0 chr12 87614472 87614494 -33643036 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1253 1026 104 0 0 chr12 87614496 87614631 -33642899 - B1_Mus1 SINE Alu -12 136 2 2 1253 378 269 142 8 chr12 87614849 87614969 -33642561 + MIRb SINE MIR 97 232 -36 2 1253 477 50 0 0 chr12 87615140 87615200 -33642330 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1253 930 138 0 0 chr12 87616594 87616754 -33640776 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 2 1253 24 53 0 0 chr12 87617017 87617055 -33640475 + AT_rich Low_complexity Low_complexity 1 38 0 2 1253 618 318 65 40 chr12 87617113 87617540 -33639990 - RSINE1 SINE B4 0 292 1 2 1253 294 333 0 0 chr12 87618918 87618999 -33638531 + L2b LINE L2 3289 3369 -6 2 1253 764 189 113 0 chr12 87619602 87619787 -33637743 - B3 SINE B2 -9 207 2 2 1253 376 215 98 83 chr12 87620468 87620600 -33636930 - B1F1 SINE Alu 0 149 16 2 1253 507 60 0 0 chr12 87620600 87620667 -33636863 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1253 388 195 13 0 chr12 87620678 87620755 -33636775 - B3A SINE B2 -77 121 44 2 1253 219 139 0 0 chr12 87620790 87620826 -33636704 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1253 263 136 0 22 chr12 87621444 87621489 -33636041 + RMER1B Other Other 1012 1055 -11 2 1253 276 30 0 0 chr12 87621491 87621524 -33636006 + (GAA)n Simple_repeat Simple_repeat 2 34 0 2 1253 529 262 45 25 chr12 87621540 87621725 -33635805 + B3 SINE B2 2 205 -11 2 1253 188 109 0 80 chr12 87621750 87621800 -33635730 + T-rich Low_complexity Low_complexity 1 46 0 2 1253 879 134 20 27 chr12 87621829 87621975 -33635555 - B1_Mus2 SINE Alu -1 146 2 2 1253 368 255 76 102 chr12 87621975 87622023 -33635507 - MT2B LTR ERVL -446 155 112 2 1253 516 168 341 1 chr12 87622811 87622971 -33634559 - B3 SINE B2 -3 195 1 2 1253 1070 90 6 0 chr12 87622978 87623134 -33634396 + (TTTTC)n Simple_repeat Simple_repeat 1 157 0 2 1253 698 221 0 21 chr12 87623157 87623300 -33634230 - B1_Mur2 SINE Alu -8 141 2 2 1253 248 306 188 13 chr12 87623452 87623601 -33633929 + L1ME3 LINE L1 5959 6133 -29 2 1253 1051 66 7 0 chr12 87623732 87623868 -33633662 + B1_Mus2 SINE Alu 10 146 -1 2 1253 300 157 53 79 chr12 87624634 87624710 -33632820 - ID4 SINE ID -8 75 2 2 1253 315 360 12 68 chr12 87626178 87626339 -33631191 - HAL1-3A_ME LINE L1 -734 2124 1973 2 1253 433 294 222 35 chr12 87626347 87626715 -33630815 - Lx9 LINE L1 -128 7516 7080 2 1253 839 283 33 86 chr12 87626716 87626798 -33630732 + Lx9 LINE L1 6710 6792 -852 2 1253 989 170 37 11 chr12 87626798 87626988 -33630542 - B2_Mm2 SINE B2 0 195 1 2 1253 839 283 33 86 chr12 87626988 87627265 -33630265 + Lx9 LINE L1 6793 7050 -594 2 1253 982 229 30 0 chr12 87628028 87628229 -33629301 - B3 SINE B2 -9 207 1 2 1253 246 256 51 0 chr12 87628263 87628341 -33629189 + L1M5 LINE L1 5735 5816 -628 2 1253 186 71 0 0 chr12 87628794 87628822 -33628708 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2 1253 1159 61 0 39 chr12 87628827 87628980 -33628550 - B1_Mus2 SINE Alu 0 147 1 2 1253 219 256 0 0 chr12 87629006 87629049 -33628481 + MIRb SINE MIR 127 169 -99 2 1253 265 277 29 87 chr12 87629053 87629156 -33628374 + MT2B2 LTR ERVL 145 241 -343 2 1253 427 256 36 6 chr12 87629081 87629184 -33628346 + PB1D10 SINE Alu 11 114 -6 2 1253 411 21 0 0 chr12 87629187 87629235 -33628295 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1253 324 143 0 0 chr12 87629440 87629496 -33628034 + (TCC)n Simple_repeat Simple_repeat 1 56 0 2 1253 1348 85 0 6 chr12 87629496 87629673 -33627857 - B2_Mm2 SINE B2 -19 176 1 2 1253 26 30 0 0 chr12 87631653 87631686 -33625844 + AT_rich Low_complexity Low_complexity 1 33 0 2 1253 214 169 16 33 chr12 87632853 87632914 -33624616 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 2 1253 676 161 137 0 chr12 87634522 87634646 -33622884 + B1_Mm SINE Alu 2 142 -5 2 1253 276 306 71 10 chr12 87634654 87634753 -33622777 + PB1D10 SINE Alu 10 114 -3 2 1253 435 250 214 8 chr12 87635357 87635474 -33622056 + RSINE1 SINE B4 13 153 -12 2 1253 1129 72 0 0 chr12 87636431 87636570 -33620960 + B1_Mus1 SINE Alu 1 139 -9 2 1253 338 356 130 5 chr12 87636649 87636872 -33620658 + L1M5 LINE L1 4593 4843 -1303 2 1253 261 0 0 0 chr12 87637216 87637245 -33620285 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1253 243 340 0 0 chr12 87637622 87637716 -33619814 + L1M5 LINE L1 5313 5406 -2476 2 1253 317 227 0 0 chr12 87637854 87637920 -33619610 + L1MD LINE L1 3777 3842 -2304 2 1253 627 285 112 47 chr12 87637912 87638358 -33619172 + L1MC LINE L1 3966 4440 -1706 2 1253 652 214 160 6 chr12 87638502 87638671 -33618859 + B3A SINE B2 2 196 -2 2 1253 376 260 20 30 chr12 87639004 87639103 -33618427 - B4 SINE B4 0 292 195 2 1253 305 191 43 14 chr12 87639106 87639175 -33618355 - B4A SINE B4 -206 86 16 2 1253 306 0 0 0 chr12 87639175 87639209 -33618321 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1253 726 210 121 21 chr12 87639299 87639489 -33618041 + B3 SINE B2 5 213 -3 2 1253 204 40 0 0 chr12 87639747 87639772 -33617758 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1253 312 321 156 40 chr12 87639842 87640118 -33617412 + L1M4 LINE L1 2225 2532 -3614 2 1253 306 250 55 33 chr12 87640263 87640354 -33617176 + L1M4 LINE L1 2650 2742 -3404 2 1253 270 286 27 54 chr12 87641335 87641446 -33616084 + ORR1E LTR MaLR 4 111 -248 2 1253 300 70 0 0 chr12 87643171 87643214 -33614316 + (TAGG)n Simple_repeat Simple_repeat 3 45 0 2 1253 890 154 181 0 chr12 87643319 87643501 -33614029 + URR1A DNA MER1_type 12 226 0 2 1253 298 283 266 0 chr12 87645328 87645512 -33612018 + RMER15 LTR ERVL 327 559 -16 2 1253 232 292 0 111 chr12 87645540 87645621 -33611909 - tRNA-Ala-GCY_ tRNA tRNA -1 74 3 2 1253 286 292 0 0 chr12 87645561 87645626 -33611904 - ID4 SINE ID -15 68 4 2 1253 201 74 0 0 chr12 87645628 87645655 -33611875 + (TCC)n Simple_repeat Simple_repeat 2 28 0 2 1253 267 31 0 0 chr12 87645656 87645688 -33611842 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1253 997 219 37 5 chr12 87645698 87645886 -33611644 - ID_B1 SINE B4 -20 204 11 3 1253 261 0 0 0 chr12 87646617 87646646 -33610884 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1253 207 0 0 0 chr12 87647074 87647097 -33610433 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1253 513 0 0 0 chr12 87647169 87647226 -33610304 + (TGG)n Simple_repeat Simple_repeat 3 59 0 3 1253 615 139 35 0 chr12 87647549 87647721 -33609809 + (TCTG)n Simple_repeat Simple_repeat 1 178 0 3 1253 387 0 0 0 chr12 87647721 87647764 -33609766 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1253 239 386 27 80 chr12 87647821 87648046 -33609484 - L3 LINE CR1 -1477 3012 2800 3 1253 201 74 0 0 chr12 87648106 87648133 -33609397 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1253 370 188 180 41 chr12 87648331 87648453 -33609077 + ID_B1 SINE B4 86 224 0 3 1253 1227 41 0 0 chr12 87648873 87649019 -33608511 - B1_Mm SINE Alu 0 147 2 3 1253 1157 81 0 0 chr12 87649183 87649331 -33608199 + B1_Mus1 SINE Alu 1 148 0 3 1253 625 237 7 14 chr12 87649414 87649555 -33607975 + B1_Mur2 SINE Alu 3 142 -7 3 1253 30 0 0 0 chr12 87649555 87649585 -33607945 + AT_rich Low_complexity Low_complexity 1 30 0 3 1253 25 31 0 0 chr12 87649685 87649717 -33607813 + AT_rich Low_complexity Low_complexity 1 32 0 3 1253 805 177 8 0 chr12 87649867 87649997 -33607533 - B1_Mur2 SINE Alu -12 137 7 3 1253 411 21 0 0 chr12 87650000 87650048 -33607482 + (TTA)n Simple_repeat Simple_repeat 1 48 0 3 1253 248 364 45 0 chr12 87650056 87650144 -33607386 - RMER15 LTR ERVL -113 462 371 3 1253 232 336 19 0 chr12 87650148 87650252 -33607278 - Lx8 LINE L1 -253 7220 7115 3 1253 656 271 82 44 chr12 87650301 87650571 -33606959 - Lx8 LINE L1 -445 7028 6749 3 1253 442 311 32 51 chr12 87650608 87650825 -33606705 + MLT1E1 LTR MaLR 417 629 -25 3 1253 202 292 135 0 chr12 87650909 87650998 -33606532 - L3 LINE CR1 -2349 2140 2040 3 1253 1237 28 14 0 chr12 87651659 87651804 -33605726 + B1_Mm SINE Alu 1 147 0 3 1253 243 0 0 0 chr12 87651829 87651856 -33605674 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1253 769 132 0 0 chr12 87652364 87652478 -33605052 - URR1B DNA MER1_type 0 225 112 3 1253 278 132 0 19 chr12 87652571 87652625 -33604905 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 3 1253 530 248 9 18 chr12 87652629 87652740 -33604790 - B1_Mur1 SINE Alu -26 123 14 3 1253 330 222 24 79 chr12 87652965 87653092 -33604438 - L1ME3A LINE L1 -13 6160 6041 3 1253 215 313 0 15 chr12 87653161 87653229 -33604301 + G-rich Low_complexity Low_complexity 3 69 0 3 1253 389 332 152 24 chr12 87653377 87653667 -33603863 - L1ME3A LINE L1 -276 5897 5571 3 1253 204 40 0 0 chr12 87653730 87653755 -33603775 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1253 460 271 8 33 chr12 87654593 87654715 -33602815 - ID_B1 SINE B4 -1 223 105 3 1253 262 333 36 0 chr12 87654643 87654727 -33602803 - PB1D7 SINE Alu -22 98 12 3 1253 382 349 111 59 chr12 87654847 87655271 -33602259 - Charlie20a DNA Charlie -174 633 179 3 1253 1281 179 9 0 chr12 87655271 87655495 -33602035 - URR1A DNA MER1_type 0 226 1 3 1253 382 349 111 59 chr12 87655495 87655646 -33601884 - Charlie20a DNA Charlie -629 178 28 3 1253 2643 154 12 2 chr12 87655688 87656097 -33601433 + MTC LTR MaLR 1 413 -8 3 1253 5651 160 125 19 chr12 87656101 87657238 -33600292 + MTC-int LTR MaLR 1 1257 -1 3 1253 226 241 0 18 chr12 87657239 87657294 -33600236 + MTC LTR MaLR 1 54 -367 3 1253 637 88 22 0 chr12 87657632 87657723 -33599807 + B1_Mur4 SINE Alu 1 93 -57 3 1253 267 214 0 152 chr12 87657634 87657733 -33599797 + MT2B2 LTR ERVL 167 250 -334 3 1253 210 143 0 0 chr12 87657744 87657779 -33599751 + (GGA)n Simple_repeat Simple_repeat 3 37 0 3 1253 431 328 47 5 chr12 87657872 87658065 -33599465 + L1MA4 LINE L1 5708 5908 -392 3 1253 1241 62 78 22 chr12 87658092 87658272 -33599258 - B2_Mm1a SINE B2 -2 191 2 3 1253 326 264 45 18 chr12 87660023 87660135 -33597395 + L1MA4 LINE L1 6153 6267 -33 3 1253 406 220 9 26 chr12 87660175 87660273 -33597257 + B1F1 SINE Alu 9 108 -12 3 1253 964 249 52 52 chr12 87660906 87661194 -33596336 - B4A SINE B4 -3 289 2 3 1253 234 232 69 42 chr12 87663120 87663192 -33594338 - MLT1A1 LTR MaLR -24 384 311 3 1253 252 205 113 141 chr12 87663518 87663660 -33593870 - ORR1E LTR MaLR -221 138 1 3 1253 345 324 68 14 chr12 87663858 87664005 -33593525 + B4 SINE B4 69 223 -69 3 1253 629 204 0 19 chr12 87663885 87664030 -33593500 + B1_Mur1 SINE Alu 15 148 -1 3 1253 1020 182 107 0 chr12 87664075 87664262 -33593268 + B3 SINE B2 3 209 -7 3 1253 22 0 0 0 chr12 87664430 87664452 -33593078 + AT_rich Low_complexity Low_complexity 1 22 0 3 1253 225 273 116 18 chr12 87664458 87664570 -33592960 + MIR SINE MIR 49 171 -91 3 1253 447 337 43 11 chr12 87664573 87664759 -33592771 - MER58A DNA MER1_type -4 220 29 3 1253 450 297 76 0 chr12 87664839 87664957 -33592573 + RSINE1 SINE B4 10 136 -29 3 1253 719 114 19 0 chr12 87664985 87665090 -33592440 + B1_Mur1 SINE Alu 43 149 0 3 1253 245 51 26 0 chr12 87665877 87665916 -33591614 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1253 515 167 0 18 chr12 87666053 87666163 -33591367 + CT-rich Low_complexity Low_complexity 2 109 0 3 1253 926 176 0 0 chr12 87666163 87666311 -33591219 - B1_Mur3 SINE Alu -1 148 1 3 1253 358 294 232 21 chr12 87666671 87667063 -33590467 - L1ME3A LINE L1 -223 5950 5477 3 1253 448 328 58 21 chr12 87667093 87667115 -33590415 - MT2A LTR ERVL -336 197 1 3 1253 530 250 95 24 chr12 87667115 87667283 -33590247 - MTEa LTR MaLR -199 180 1 3 1253 200 324 0 14 chr12 87667541 87667613 -33589917 + L2c LINE L2 3307 3377 -10 3 1253 1366 231 93 25 chr12 87667968 87668310 -33589220 - MTD LTR MaLR -36 383 19 3 1253 267 31 0 0 chr12 87668310 87668342 -33589188 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1253 1366 231 93 25 chr12 87668342 87668354 -33589176 - MTD LTR MaLR -401 18 5 3 1253 390 42 0 0 chr12 87668878 87668926 -33588604 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1253 471 352 174 11 chr12 87669602 87669981 -33587549 - MLT1K LTR MaLR -153 442 2 3 1253 215 301 56 103 chr12 87670011 87670036 -33587494 - B3A SINE B2 -16 182 142 3 1253 299 164 18 18 chr12 87670036 87670092 -33587438 - B4 SINE B4 -2 290 235 3 1253 215 301 56 103 chr12 87670092 87670137 -33587393 - B3A SINE B2 -16 141 63 3 1253 357 303 36 43 chr12 87670107 87670245 -33587285 - B4 SINE B4 -120 172 36 3 1253 343 378 39 39 chr12 87670392 87670651 -33586879 + L4 LINE RTE 1178 1436 -593 3 1253 289 267 56 28 chr12 87670778 87670886 -33586644 + L1M2 LINE L1 5709 5819 -478 3 1253 324 0 0 0 chr12 87671331 87671367 -33586163 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1253 390 21 0 0 chr12 87671367 87671413 -33586117 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1253 297 0 0 0 chr12 87671414 87671447 -33586083 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 3 1253 21 0 0 0 chr12 87672096 87672117 -33585413 + AT_rich Low_complexity Low_complexity 1 21 0 3 1253 198 0 0 0 chr12 87672898 87672920 -33584610 + (CAGG)n Simple_repeat Simple_repeat 2 23 0 3 1253 221 276 17 0 chr12 87673359 87673417 -33584113 + MIRc SINE MIR 85 143 -125 3 1253 618 219 15 23 chr12 87673867 87673998 -33583532 + RSINE1 SINE B4 3 132 -33 3 1253 1328 122 18 18 chr12 87674131 87674357 -33583173 - URR1A DNA MER1_type 0 226 1 3 1253 713 263 12 64 chr12 87674403 87674619 -33582911 + B3A SINE B2 1 214 -2 3 1253 523 259 59 95 chr12 87675104 87675206 -33582324 + B4 SINE B4 4 108 -184 3 1253 2941 42 42 3 chr12 87675206 87675587 -33581943 + MTA_Mm LTR MaLR 1 396 0 3 1253 523 259 59 95 chr12 87675587 87675706 -33581824 + B4 SINE B4 109 217 -75 3 1253 1380 203 16 189 chr12 87675879 87676139 -33581391 + RLTR14 LTR ERV1 1 256 -126 3 1253 1208 41 0 0 chr12 87676139 87676285 -33581245 + B1_Mus1 SINE Alu 2 147 -1 3 1253 1380 203 16 189 chr12 87676285 87676473 -33581057 + RLTR14 LTR ERV1 257 371 -11 3 1253 308 83 0 20 chr12 87676578 87676627 -33580903 + (CTTA)n Simple_repeat Simple_repeat 2 49 0 3 1253 422 252 74 9 chr12 87676662 87676770 -33580760 - ID_B1 SINE B4 -31 193 79 3 1253 931 230 34 0 chr12 87677237 87677446 -33580084 + B3 SINE B2 1 216 0 3 1253 479 214 71 0 chr12 87678384 87678496 -33579034 + RSINE1 SINE B4 11 130 -35 3 1253 340 264 60 60 chr12 87678647 87678780 -33578750 - MIR3 SINE MIR -61 147 15 3 1253 188 296 0 0 chr12 87679177 87679221 -33578309 + L2c LINE L2 3296 3339 -48 3 1253 497 184 9 0 chr12 87679992 87680106 -33577424 + (TG)n Simple_repeat Simple_repeat 1 115 0 3 1253 1007 231 77 60 chr12 87680517 87680881 -33576649 + ORR1D2 LTR MaLR 1 370 0 3 1253 1074 57 43 0 chr12 87680945 87681085 -33576445 - B1_Mus2 SINE Alu 0 147 2 3 1253 242 217 0 104 chr12 87681128 87681195 -33576335 + PB1D10 SINE Alu 40 99 -18 3 1253 447 19 0 0 chr12 87681195 87681247 -33576283 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1253 342 115 0 0 chr12 87681247 87681308 -33576222 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1253 256 300 78 0 chr12 87681326 87681416 -33576114 + L1M3 LINE L1 5222 5318 -822 3 1253 239 276 0 0 chr12 87681535 87681593 -33575937 - L1ME1 LINE L1 -7 6155 6098 3 1253 466 316 7 0 chr12 87681631 87681770 -33575760 + MER58A DNA MER1_type 74 213 -11 3 1253 281 273 109 36 chr12 87681787 87681924 -33575606 - L1ME1 LINE L1 -112 6067 5921 3 1253 400 220 130 12 chr12 87681948 87682109 -33575421 - L1ME1 LINE L1 -730 5434 5255 3 1253 723 126 7 22 chr12 87682112 87682250 -33575280 + GA-rich Low_complexity Low_complexity 3 138 0 3 1253 349 299 56 0 chr12 87682300 87682444 -33575086 - MLT1D LTR MaLR 0 505 354 3 1253 318 311 65 16 chr12 87682447 87682571 -33574959 - L1MEg1 LINE L1 -6100 135 6 3 1253 535 339 125 20 chr12 87682631 87683040 -33574490 - L2a LINE L2 0 3426 2975 3 1253 244 244 33 0 chr12 87683258 87683348 -33574182 - L2a LINE L2 -827 2592 2500 3 1253 372 332 39 19 chr12 87683545 87683751 -33573779 - LTR82A LTR ERVL -140 732 523 3 1253 628 252 24 53 chr12 87683847 87684056 -33573474 + B3 SINE B2 1 203 -13 3 1253 303 93 0 0 chr12 87684068 87684111 -33573419 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1253 242 193 18 0 chr12 87684138 87684195 -33573335 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 4 1253 693 260 34 122 chr12 87684195 87684333 -33573197 - RCHARR1 DNA MER1_type -10 964 829 4 1253 1150 159 14 50 chr12 87684333 87684552 -33572978 + B3 SINE B2 1 211 -5 4 1253 693 260 34 122 chr12 87684552 87684676 -33572854 - RCHARR1 DNA MER1_type -146 828 725 4 1253 511 295 0 0 chr12 87684679 87684808 -33572722 + RSINE1 SINE B4 20 148 -17 4 1253 1125 51 0 0 chr12 87684849 87684987 -33572543 + B1_Mus2 SINE Alu 1 138 -9 4 1253 315 0 0 0 chr12 87684987 87685022 -33572508 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1253 483 278 85 13 chr12 87685024 87685177 -33572353 - RCHARR1 DNA MER1_type -335 639 476 4 1253 611 269 24 42 chr12 87685184 87685351 -33572179 + B3A SINE B2 5 168 -30 4 1253 776 55 9 0 chr12 87685370 87685480 -33572050 + (TC)n Simple_repeat Simple_repeat 2 112 0 4 1253 2234 82 25 12 chr12 87685505 87685828 -33571702 + ORR1A2 LTR MaLR 1 327 0 4 1253 487 197 24 52 chr12 87686348 87686482 -33571048 - MTD LTR MaLR -18 403 282 4 1253 717 228 54 24 chr12 87686480 87686646 -33570884 - MTD LTR MaLR -248 171 1 4 1253 306 0 0 0 chr12 87686682 87686716 -33570814 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 156 956 115 7 7 chr12 87687141 87687290 -33570240 + B1_Mur4 SINE Alu 1 149 -1 4 1254 279 113 0 0 chr12 87688319 87688372 -33569158 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 4 1254 357 324 22 14 chr12 87688414 87688552 -33568978 - B4A SINE B4 -49 243 105 4 1254 629 263 7 7 chr12 87689662 87689800 -33567730 + ID_B1 SINE B4 47 184 -40 4 1254 998 130 0 0 chr12 87689896 87690042 -33567488 - B1_Mus1 SINE Alu -1 147 2 4 1254 245 291 38 12 chr12 87690179 87690259 -33567271 + L2c LINE L2 3072 3153 -234 4 1254 414 0 0 0 chr12 87690302 87690348 -33567182 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1254 279 246 94 26 chr12 87690409 87690526 -33567004 - B4A SINE B4 -151 141 17 4 1254 204 216 78 0 chr12 87690646 87690697 -33566833 + L2c LINE L2 3290 3344 -31 4 1254 319 302 151 0 chr12 87690747 87690906 -33566624 + MamRep434 DNA TcMar 143 325 -101 4 1254 401 241 27 36 chr12 87691572 87691684 -33565846 - PB1D10 SINE Alu -5 112 2 4 1254 243 283 40 10 chr12 87691953 87692053 -33565477 - MLT1L LTR MaLR -153 457 355 4 1254 215 371 76 0 chr12 87692379 87692484 -33565046 - MER91C DNA Tip100 -1 139 27 4 1254 393 22 0 0 chr12 87692560 87692606 -33564924 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 4 1254 1163 73 18 0 chr12 87692779 87692944 -33564586 + (GGGAGA)n Simple_repeat Simple_repeat 5 172 0 4 1254 464 273 220 3 chr12 87693038 87693343 -33564187 + L1MA9 LINE L1 4821 5191 -949 4 1254 475 263 17 0 chr12 87693506 87693624 -33563906 + B4A SINE B4 2 121 -171 4 1254 413 221 83 10 chr12 87693647 87693743 -33563787 + B4A SINE B4 190 292 0 4 1254 284 287 43 0 chr12 87693770 87693864 -33563666 + B1F2 SINE Alu 1 98 -51 4 1254 777 251 46 35 chr12 87693876 87694166 -33563364 + L1MA9 LINE L1 5319 5618 -571 4 1254 230 81 27 0 chr12 87694211 87694248 -33563282 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1254 477 148 0 0 chr12 87694271 87694352 -33563178 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 4 1254 689 318 133 13 chr12 87694359 87694751 -33562779 + L1MA9 LINE L1 5664 6102 -210 4 1254 206 377 19 62 chr12 87696136 87696297 -33561233 + MIRb SINE MIR 95 248 -20 4 1254 274 302 72 10 chr12 87697524 87697621 -33559909 + MLT1C LTR MaLR 18 120 -347 4 1254 607 276 56 19 chr12 87697693 87697907 -33559623 + MLT1C LTR MaLR 246 467 0 4 1254 567 113 36 43 chr12 87698622 87698761 -33558769 + CT-rich Low_complexity Low_complexity 3 140 0 4 1254 846 270 59 11 chr12 87698785 87699055 -33558475 - B4 SINE B4 -7 285 3 4 1254 623 13 13 0 chr12 87699081 87699157 -33558373 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 4 1254 473 265 73 26 chr12 87699173 87699324 -33558206 - RSINE1 SINE B4 -6 159 2 4 1254 492 128 0 0 chr12 87699427 87699505 -33558025 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 4 1254 324 0 0 0 chr12 87699506 87699542 -33557988 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1254 184 368 66 0 chr12 87699896 87700002 -33557528 - MIR SINE MIR -36 226 114 4 1254 195 100 0 0 chr12 87700444 87700474 -33557056 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1254 1243 7 20 0 chr12 87703132 87703283 -33554247 + (TCTA)n Simple_repeat Simple_repeat 4 157 0 4 1254 198 0 0 0 chr12 87704197 87704219 -33553311 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1254 590 100 163 70 chr12 87704225 87704354 -33553176 + B1_Mur3 SINE Alu 1 141 -8 4 1254 213 39 0 0 chr12 87704380 87704406 -33553124 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 4 1254 492 18 0 0 chr12 87704774 87704831 -33552699 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1254 285 269 15 0 chr12 87707676 87707743 -33549787 + L2b LINE L2 3304 3371 -4 4 1254 757 179 0 35 chr12 87707835 87707980 -33549550 - URR1B DNA MER1_type 0 225 86 4 1254 329 286 24 67 chr12 87707980 87707993 -33549537 + CYRA11_Mm Unknown Y-chromosome 211 322 -295 4 1254 351 98 0 0 chr12 87708078 87708139 -33549391 + (CAGAGA)n Simple_repeat Simple_repeat 4 64 0 4 1254 488 318 60 55 chr12 87708962 87709162 -33548368 + B4 SINE B4 92 292 0 4 1254 402 243 0 0 chr12 87709186 87709326 -33548204 + (CA)n Simple_repeat Simple_repeat 1 140 0 4 1254 540 264 226 35 chr12 87710273 87710560 -33546970 + MTD LTR MaLR 1 342 -77 4 1254 604 129 58 0 chr12 87710980 87711135 -33546395 - Lx9 LINE L1 0 7644 7481 4 1254 290 252 17 70 chr12 87711487 87711602 -33545928 + MTEa LTR MaLR 269 377 -2 4 1254 654 47 0 0 chr12 87712705 87712791 -33544739 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 1254 333 285 40 0 chr12 87713248 87713352 -33544178 + PB1D7 SINE Alu 13 120 0 4 1254 686 207 13 58 chr12 87713570 87713724 -33543806 + RSINE1 SINE B4 4 150 -15 4 1254 374 57 0 19 chr12 87713761 87713815 -33543715 + (TAA)n Simple_repeat Simple_repeat 2 54 0 4 1254 329 244 42 42 chr12 87714680 87714800 -33542730 - MIR SINE MIR -69 199 76 4 1254 519 40 79 16 chr12 87714865 87714991 -33542539 + (TG)n Simple_repeat Simple_repeat 1 134 0 4 1254 498 115 66 6 chr12 87715044 87715210 -33542320 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 1254 1092 226 48 159 chr12 87715214 87715629 -33541901 - MTEa LTR MaLR -2 377 9 4 1254 466 304 61 0 chr12 87715753 87715901 -33541629 - RSINE1 SINE B4 -6 159 3 4 1254 464 243 28 18 chr12 87715903 87716012 -33541518 - B1F SINE Alu 0 149 40 4 1254 215 211 0 0 chr12 87716236 87716274 -33541256 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1254 414 174 116 0 chr12 87716279 87716365 -33541165 - B4 SINE B4 -72 220 125 4 1254 411 113 0 0 chr12 87716614 87716676 -33540854 + (GGGA)n Simple_repeat Simple_repeat 2 63 0 4 1254 242 343 0 0 chr12 87717744 87717814 -33539716 - LTR16A1 LTR ERVL -219 237 168 4 1254 201 211 0 0 chr12 87717930 87717987 -33539543 + (GAGTG)n Simple_repeat Simple_repeat 4 60 0 4 1254 339 264 18 146 chr12 87720081 87720245 -33537285 + RSINE1 SINE B4 23 165 0 4 1254 203 302 0 0 chr12 87720986 87721039 -33536491 + G-rich Low_complexity Low_complexity 1 53 0 4 1254 235 259 144 0 chr12 87722215 87722325 -33535205 + MIR SINE MIR 33 165 -97 4 1254 281 267 13 0 chr12 87722411 87722486 -33535044 + ID2 SINE ID 6 81 -2 4 1254 287 49 0 24 chr12 87722637 87722679 -33534851 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1254 489 185 11 0 chr12 87722690 87722782 -33534748 - B4A SINE B4 -41 251 159 4 1254 534 220 0 0 chr12 87722807 87722948 -33534582 + (CA)n Simple_repeat Simple_repeat 1 141 0 4 1254 436 269 25 25 chr12 87722973 87723091 -33534439 - B4A SINE B4 -166 126 9 4 1254 439 246 45 60 chr12 87723116 87723250 -33534280 - ID_B1 SINE B4 -2 222 91 4 1254 725 169 14 35 chr12 87723602 87723743 -33533787 + B1_Mur3 SINE Alu 1 138 -11 4 1254 462 44 67 0 chr12 87724047 87724137 -33533393 + (CCCCCT)n Simple_repeat Simple_repeat 3 98 0 4 1254 275 276 114 38 chr12 87724214 87724304 -33533226 + MIR SINE MIR 69 166 -96 4 1254 189 0 0 0 chr12 87724304 87724325 -33533205 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1254 275 276 114 38 chr12 87724325 87724392 -33533138 + MIR SINE MIR 167 238 -24 4 1254 1092 75 0 0 chr12 87724415 87724562 -33532968 + (TAGA)n Simple_repeat Simple_repeat 2 148 0 4 1254 314 266 0 6 chr12 87725121 87725299 -33532231 + CT-rich Low_complexity Low_complexity 2 178 0 4 1254 331 208 8 8 chr12 87725355 87725486 -33532044 + CT-rich Low_complexity Low_complexity 2 132 0 4 1254 647 186 22 37 chr12 87725898 87726032 -33531498 - B1_Mur2 SINE Alu -17 132 1 4 1254 255 347 55 43 chr12 87726238 87726364 -33531166 - L2b LINE L2 -4 3422 3263 4 1254 369 0 0 0 chr12 87726475 87726516 -33531014 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1254 347 309 8 24 chr12 87726681 87726807 -33530723 - MIR SINE MIR -118 144 21 4 1254 299 265 77 39 chr12 87727416 87727570 -33529960 - L2b LINE L2 -307 3119 2953 4 1254 2388 124 10 15 chr12 87727741 87728134 -33529396 - ORR1B1 LTR MaLR -2 392 2 4 1254 549 105 0 0 chr12 87728436 87728522 -33529008 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 4 1254 408 265 0 39 chr12 87728535 87728637 -33528893 - PB1D10 SINE Alu -15 102 5 4 1254 192 40 0 0 chr12 87729716 87729741 -33527789 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1254 769 189 0 0 chr12 87730401 87730533 -33526997 - B1_Mur4 SINE Alu -18 132 1 4 1254 1057 83 14 0 chr12 87730562 87730707 -33526823 - B1_Mus1 SINE Alu -1 147 1 4 1254 259 41 0 32 chr12 87730760 87730809 -33526721 + B1_Mur4 SINE Alu 74 149 -1 4 1254 211 67 67 0 chr12 87730809 87730854 -33526676 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 1254 1065 210 78 22 chr12 87731015 87731269 -33526261 + B4 SINE B4 1 268 -24 4 1254 387 60 0 0 chr12 87731269 87731319 -33526211 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1254 1065 210 78 22 chr12 87731319 87731332 -33526198 + B4 SINE B4 269 282 -10 4 1254 499 256 48 0 chr12 87731436 87731454 -33526076 + B4 SINE B4 68 91 -201 4 1254 870 58 33 0 chr12 87731454 87731575 -33525955 + B1_Mus2 SINE Alu 1 125 -22 4 1254 289 234 35 43 chr12 87731493 87731609 -33525921 + RLTR25B LTR ERVK 441 555 -473 4 1254 331 185 73 12 chr12 87732116 87732198 -33525332 + PB1D10 SINE Alu 31 117 0 5 1254 797 204 0 20 chr12 87733219 87733369 -33524161 + B1_Mur4 SINE Alu 2 148 -2 5 1254 432 0 0 0 chr12 87733369 87733417 -33524113 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1254 184 281 70 0 chr12 87733536 87733593 -33523937 + MIRb SINE MIR 121 181 -87 5 1254 366 340 161 8 chr12 87733859 87734120 -33523410 - MLT1G1 LTR MaLR -22 557 257 5 1254 232 419 49 12 chr12 87734140 87734286 -33523244 - MLT1G1 LTR MaLR -381 174 23 5 1254 333 229 122 69 chr12 87734286 87734417 -33523113 + RMER30 DNA MER1_type 2 139 -63 5 1254 337 295 0 110 chr12 87734431 87734451 -33523079 - MT2B LTR ERVL -321 280 210 5 1254 508 181 9 54 chr12 87734451 87734562 -33522968 - B1_Mur3 SINE Alu -42 107 2 5 1254 337 295 0 110 chr12 87734562 87734576 -33522954 - MT2B LTR ERVL -321 209 152 5 1254 381 262 0 0 chr12 87734566 87734646 -33522884 + RMER30 DNA MER1_type 121 200 -2 5 1254 197 269 58 29 chr12 87734663 87734732 -33522798 - L2 LINE L2 -499 2920 2850 5 1254 408 254 41 58 chr12 87734762 87734883 -33522647 - B1F2 SINE Alu -9 140 22 5 1254 319 309 7 81 chr12 87734999 87735147 -33522383 + MIR SINE MIR 107 243 -19 5 1254 659 270 140 12 chr12 87735203 87735448 -33522082 - B4 SINE B4 -18 274 14 5 1254 1269 220 97 12 chr12 87735631 87735962 -33521568 - MTEa LTR MaLR -13 366 8 5 1254 227 299 104 59 chr12 87736098 87736233 -33521297 + B1F SINE Alu 2 142 -7 5 1254 244 208 77 49 chr12 87737354 87737500 -33520030 + MIRm SINE MIR 16 175 -93 5 1254 240 361 0 69 chr12 87737585 87737716 -33519814 - MIRb SINE MIR -135 133 9 5 1254 1331 258 132 60 chr12 87737861 87738574 -33518956 - Lx9 LINE L1 0 7644 6881 5 1254 185 94 31 0 chr12 87738695 87738727 -33518803 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 5 1254 23 0 0 0 chr12 87739165 87739188 -33518342 + AT_rich Low_complexity Low_complexity 1 23 0 5 1254 622 234 0 0 chr12 87739250 87739374 -33518156 - B3 SINE B2 -60 156 33 5 1254 2165 124 54 24 chr12 87740611 87740982 -33516548 + ORR1B1 LTR MaLR 5 386 -8 5 1254 649 297 0 25 chr12 87741038 87741235 -33516295 - RMER30 DNA MER1_type -1 201 10 5 1254 438 20 0 0 chr12 87741312 87741363 -33516167 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 5 1254 463 183 11 21 chr12 87741732 87741827 -33515703 - B1_Mur3 SINE Alu -55 94 1 5 1254 336 318 52 13 chr12 87742548 87742701 -33514829 - MLT1C LTR MaLR -81 386 228 5 1254 400 229 140 25 chr12 87742724 87742881 -33514649 - MLT1C LTR MaLR -288 179 5 5 1254 452 231 46 9 chr12 87743219 87743328 -33514202 + B1F SINE Alu 37 149 0 5 1254 223 279 161 21 chr12 87744310 87744453 -33513077 - MIR SINE MIR -29 233 71 5 1254 1060 240 52 105 chr12 87745698 87746098 -33511432 - MTE2a LTR MaLR 0 379 1 5 1254 1138 168 130 210 chr12 87746762 87747025 -33510505 - MTD LTR MaLR 0 419 203 5 1254 942 163 0 0 chr12 87747025 87747172 -33510358 - B1_Mus1 SINE Alu 0 148 2 5 1254 1138 168 130 210 chr12 87747172 87747361 -33510169 - MTD LTR MaLR -217 202 3 5 1254 1468 224 107 87 chr12 87747361 87747830 -33509700 - MTD-int LTR MaLR 0 1258 781 5 1254 25 0 0 0 chr12 87747992 87748017 -33509513 + AT_rich Low_complexity Low_complexity 1 25 0 5 1254 1038 64 35 7 chr12 87748047 87748189 -33509341 - B1_Mus1 SINE Alu -1 147 2 5 1254 827 149 15 0 chr12 87748421 87748555 -33508975 - B1_Mur2 SINE Alu -9 140 5 5 1254 454 184 69 0 chr12 87748589 87748676 -33508854 + ID_B1 SINE B4 132 224 0 5 1254 685 187 8 0 chr12 87748823 87748946 -33508584 + B1_Mur2 SINE Alu 10 133 -16 5 1254 180 0 0 0 chr12 87748949 87748969 -33508561 + (CAAAC)n Simple_repeat Simple_repeat 1 20 0 5 1254 273 29 0 0 chr12 87749494 87749528 -33508002 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 5 1254 1002 118 7 0 chr12 87749529 87749681 -33507849 - B2_Mm2 SINE B2 -41 154 2 5 1254 237 279 149 26 chr12 87750268 87750382 -33507148 - MLT1A0 LTR MaLR -28 380 253 5 1254 243 253 61 37 chr12 87750416 87750498 -33507032 - MLT1A0 LTR MaLR -281 84 1 5 1254 419 122 0 0 chr12 87750918 87750990 -33506540 + ORR1D2 LTR MaLR 303 370 0 5 1254 417 39 0 0 chr12 87752031 87752082 -33505448 + (ATTG)n Simple_repeat Simple_repeat 2 52 0 5 1254 449 258 22 118 chr12 87752082 87752218 -33505312 - B1_Mur1 SINE Alu -26 123 1 5 1254 247 344 23 47 chr12 87752222 87752350 -33505180 - MIRb SINE MIR -125 143 19 5 1254 224 100 25 0 chr12 87752521 87752561 -33504969 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1254 232 301 107 0 chr12 87753473 87753576 -33503954 + MamRep1161 DNA TcMar 21 134 -823 5 1254 1175 166 222 14 chr12 87753939 87754074 -33503456 + ORR1C2 LTR MaLR 1 174 -210 5 1254 720 53 26 9 chr12 87754074 87754188 -33503342 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 5 1254 1175 166 222 14 chr12 87754188 87754340 -33503190 + ORR1C2 LTR MaLR 175 348 -36 5 1254 462 274 0 0 chr12 87754408 87754503 -33503027 + ID_B1 SINE B4 107 201 -23 5 1254 453 189 0 0 chr12 87754530 87754620 -33502910 + GA-rich Low_complexity Low_complexity 4 93 0 5 1254 444 340 7 7 chr12 87754860 87755005 -33502525 + RSINE1 SINE B4 5 149 -16 5 1254 444 320 12 102 chr12 87755059 87755303 -33502227 - MER97c DNA MER1_type? -866 224 3 5 1254 354 306 110 29 chr12 87755307 87755516 -33502014 + MLT1L LTR MaLR 1 226 -384 5 1254 417 283 66 0 chr12 87755535 87755641 -33501889 + PB1D9 SINE Alu 6 118 -2 5 1254 222 206 39 9 chr12 87755641 87755709 -33501821 + ID4 SINE ID 1 68 -84 5 1254 495 271 52 8 chr12 87756016 87756150 -33501380 + B1F2 SINE Alu 10 149 0 5 1254 189 204 23 0 chr12 87757058 87757102 -33500428 - MIRc SINE MIR -14 254 210 5 1254 22 35 0 0 chr12 87757535 87757564 -33499966 + AT_rich Low_complexity Low_complexity 1 29 0 5 1254 357 43 0 0 chr12 87757595 87757642 -33499888 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1254 519 270 0 0 chr12 87757643 87757754 -33499776 + RSINE1 SINE B4 15 125 -40 5 1254 477 0 0 0 chr12 87757914 87757967 -33499563 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1254 341 311 78 0 chr12 87760346 87760449 -33497081 - Tigger5 DNA MER2_type 0 2406 2296 5 1254 183 156 0 0 chr12 87763988 87764020 -33493510 + CT-rich Low_complexity Low_complexity 1 32 0 5 1254 182 171 0 24 chr12 87764976 87765018 -33492512 + CT-rich Low_complexity Low_complexity 2 42 0 5 1254 351 0 0 0 chr12 87766369 87766408 -33491122 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1254 459 0 0 0 chr12 87767457 87767508 -33490022 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1254 252 0 0 0 chr12 87768670 87768698 -33488832 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1254 194 0 39 0 chr12 87769853 87769879 -33487651 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1254 555 238 41 0 chr12 87769905 87770027 -33487503 + ID_B1 SINE B4 79 205 -19 5 1254 43 0 0 0 chr12 87772021 87772064 -33485466 + AT_rich Low_complexity Low_complexity 1 43 0 5 1254 475 217 138 8 chr12 87772476 87772606 -33484924 - B1_Mur2 SINE Alu 0 149 3 5 1254 1445 63 5 0 chr12 87772953 87773144 -33484386 - B2_Mm1a SINE B2 0 193 2 5 1254 469 194 92 56 chr12 87773448 87773590 -33483940 - ID_B1 SINE B4 0 224 78 5 1254 657 264 6 18 chr12 87773634 87773800 -33483730 - RSINE1 SINE B4 0 165 2 5 1254 368 88 0 17 chr12 87774822 87774880 -33482650 + (TAA)n Simple_repeat Simple_repeat 1 57 0 5 1254 328 329 122 7 chr12 87774892 87775039 -33482491 - MIR SINE MIR -1 261 98 5 1254 438 341 89 29 chr12 87775797 87776078 -33481452 + MER63D DNA AcHobo 36 333 -728 5 1254 435 305 115 0 chr12 87776162 87776336 -33481194 + MIRb SINE MIR 68 261 -7 5 1254 863 148 35 0 chr12 87778321 87778463 -33479067 + B1_Mus2 SINE Alu 1 147 0 5 1254 315 122 0 0 chr12 87778463 87778512 -33479018 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1254 261 0 0 0 chr12 87779279 87779308 -33478222 + (CAT)n Simple_repeat Simple_repeat 2 30 0 5 1254 432 0 0 0 chr12 87779700 87779748 -33477782 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1254 755 169 264 6 chr12 87780478 87780645 -33476885 + B3 SINE B2 1 210 -6 5 1254 646 144 9 0 chr12 87780721 87780832 -33476698 + ID_B1 SINE B4 111 222 -2 5 1254 568 266 21 14 chr12 87781177 87781318 -33476212 + B3A SINE B2 1 142 -56 5 1254 279 0 0 0 chr12 87781321 87781352 -33476178 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1254 468 0 0 0 chr12 87781352 87781403 -33476127 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1254 1491 42 16 5 chr12 87781430 87781623 -33475907 - B2_Mm2 SINE B2 0 195 1 5 1254 398 284 105 33 chr12 87781752 87781905 -33475625 - RSINE1 SINE B4 0 165 2 5 1254 696 254 23 0 chr12 87781915 87782092 -33475438 - ID_B1 SINE B4 -13 211 31 5 1254 244 340 63 19 chr12 87782268 87782455 -33475075 - MIR SINE MIR -54 214 19 5 1254 458 268 26 9 chr12 87782600 87782713 -33474817 - PB1D7 SINE Alu 0 120 6 5 1254 368 308 194 18 chr12 87783056 87783334 -33474196 - MARNA DNA Mariner -242 344 18 5 1254 644 185 143 1 chr12 87783904 87784091 -33473439 - MTD LTR MaLR -15 404 185 5 1254 456 104 0 0 chr12 87784106 87784173 -33473357 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 5 1254 642 110 88 35 chr12 87784178 87784291 -33473239 - B1_Mus1 SINE Alu 0 148 30 5 1254 620 259 42 26 chr12 87784297 87784487 -33473043 - MTD LTR MaLR -217 202 10 5 1254 586 276 54 5 chr12 87784835 87785021 -33472509 - MLT2B4 LTR ERVL -353 203 9 5 1254 1153 62 0 0 chr12 87785128 87785274 -33472256 + B1_Mm SINE Alu 2 147 0 5 1254 203 175 0 0 chr12 87785276 87785316 -33472214 + A-rich Low_complexity Low_complexity 1 40 0 5 1254 1104 75 0 14 chr12 87785325 87785464 -33472066 + B1_Mus1 SINE Alu 2 140 -8 5 1254 399 56 0 0 chr12 87785464 87785518 -33472012 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 5 1254 1233 94 11 0 chr12 87785611 87785792 -33471738 - B2_Mm1t SINE B2 -8 185 3 6 1254 632 143 210 0 chr12 87785817 87785936 -33471594 - B1_Mur4 SINE Alu -5 145 2 6 1254 392 235 8 40 chr12 87786220 87786344 -33471186 - PB1D9 SINE Alu 0 120 1 6 1254 280 296 0 39 chr12 87787027 87787129 -33470401 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 1254 292 121 379 0 chr12 87787781 87787847 -33469683 + PB1D10 SINE Alu 14 104 -13 6 1254 862 246 5 34 chr12 87787865 87788071 -33469459 + ID_B1 SINE B4 3 202 -22 6 1254 467 215 36 196 chr12 87788343 87788568 -33468962 + B3A SINE B2 1 189 -9 6 1254 252 0 0 0 chr12 87788568 87788596 -33468934 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 6 1254 513 28 14 0 chr12 87788597 87788668 -33468862 + B1_Mm SINE Alu 75 146 -1 6 1254 366 80 0 0 chr12 87788692 87788742 -33468788 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 6 1254 385 289 52 9 chr12 87788880 87788995 -33468535 - ID_B1 SINE B4 -5 219 100 6 1254 190 109 65 0 chr12 87789002 87789048 -33468482 + (ATTG)n Simple_repeat Simple_repeat 2 50 0 6 1254 344 306 87 53 chr12 87789051 87789258 -33468272 - Lx8 LINE L1 -151 7322 7109 6 1254 515 231 17 8 chr12 87789337 87789455 -33468075 + PB1D7 SINE Alu 2 120 0 6 1254 407 295 43 14 chr12 87789567 87789708 -33467822 + ID_B1 SINE B4 80 224 0 6 1254 211 303 13 26 chr12 87790432 87790510 -33467020 + B1_Mus1 SINE Alu 4 80 -68 6 1254 439 285 34 69 chr12 87790459 87790476 -33467054 + ID_B1 SINE B4 67 218 -74 6 1254 793 182 0 0 chr12 87790476 87790613 -33466917 + B1_Mus1 SINE Alu 3 139 -9 6 1254 374 53 18 0 chr12 87790613 87790670 -33466860 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 6 1254 306 278 44 80 chr12 87790670 87790687 -33466843 + B4A SINE B4 219 235 -57 6 1254 279 0 0 0 chr12 87791346 87791377 -33466153 + (TAA)n Simple_repeat Simple_repeat 3 33 0 6 1254 1038 163 5 11 chr12 87791398 87791584 -33465946 + B3 SINE B2 32 216 0 6 1254 689 90 0 0 chr12 87791621 87791721 -33465809 + B1_Mus2 SINE Alu 42 141 -6 6 1254 311 300 0 0 chr12 87791746 87791826 -33465704 + ID SINE ID 8 87 -137 6 1254 678 186 0 24 chr12 87791878 87791915 -33465615 + B3A SINE B2 2 37 -161 6 1254 1616 204 33 47 chr12 87791915 87792338 -33465192 + MTD LTR MaLR 3 419 0 6 1254 678 186 0 24 chr12 87792338 87792427 -33465103 + B3A SINE B2 38 125 -73 6 1254 225 314 0 110 chr12 87792501 87792637 -33464893 - MIRc SINE MIR -116 152 32 6 1254 611 247 6 31 chr12 87792910 87793073 -33464457 + RSINE1 SINE B4 1 159 -6 6 1254 1633 21 0 0 chr12 87793223 87793415 -33464115 - B2_Mm1a SINE B2 -1 192 1 6 1254 351 0 0 0 chr12 87793491 87793530 -33464000 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1254 507 33 0 0 chr12 87793530 87793590 -33463940 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1254 795 172 7 15 chr12 87793944 87794080 -33463450 + B1_Mur1 SINE Alu 13 147 -2 6 1254 243 250 102 74 chr12 87794984 87795092 -33462438 + L2c LINE L2 3083 3193 -194 6 1254 194 0 39 0 chr12 87795185 87795211 -33462319 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 1254 493 238 0 28 chr12 87795223 87795331 -33462199 - B1F1 SINE Alu 0 149 45 6 1254 362 272 114 17 chr12 87795746 87795922 -33461608 - L1MD3 LINE L1 -256 7739 7418 6 1254 207 0 0 0 chr12 87796576 87796599 -33460931 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1254 789 163 7 7 chr12 87796599 87796726 -33460804 - B1_Mur4 SINE Alu -8 142 15 6 1254 1234 61 0 24 chr12 87796726 87796894 -33460636 - B2_Mm2 SINE B2 -31 164 1 6 1254 752 249 8 56 chr12 87797485 87797719 -33459811 + ID_B1 SINE B4 1 223 -1 6 1254 322 71 0 0 chr12 87797779 87797821 -33459709 - B1_Mm SINE Alu -52 95 54 6 1254 1401 160 19 31 chr12 87797826 87798084 -33459446 - RLTR28 LTR ERVL -266 258 4 6 1254 1849 180 108 3 chr12 87798343 87798722 -33458808 - MTD LTR MaLR 0 419 1 6 1254 216 42 41 41 chr12 87798933 87798946 -33458584 + (CAAA)n Simple_repeat Simple_repeat 2 14 0 6 1254 1227 14 0 13 chr12 87798946 87799095 -33458435 + B1_Mm SINE Alu 1 147 0 6 1254 216 42 41 41 chr12 87799095 87799130 -33458400 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 6 1254 1737 151 154 37 chr12 87799130 87799616 -33457914 + RMER15 LTR ERVL 29 571 -4 6 1254 216 293 12 62 chr12 87799780 87799860 -33457670 + MIR SINE MIR 77 152 -110 6 1254 619 210 21 21 chr12 87799861 87800002 -33457528 + B1F SINE Alu 1 141 -8 6 1254 301 346 18 41 chr12 87801016 87801185 -33456345 - MLT1J1 LTR MaLR -177 267 103 6 1254 262 286 74 126 chr12 87801193 87801613 -33455917 - RMER10A LTR ERVL -27 415 18 6 1254 342 0 0 0 chr12 87801881 87801919 -33455611 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1254 322 319 95 47 chr12 87802756 87802904 -33454626 - MIR SINE MIR -75 187 33 6 1254 262 325 88 29 chr12 87803100 87803124 -33454406 - B2_Mm1t SINE B2 -11 182 2 6 1254 539 252 82 0 chr12 87803124 87803271 -33454259 - RSINE1 SINE B4 -4 161 3 6 1254 694 232 11 45 chr12 87803351 87803365 -33454165 - B3 SINE B2 -1 215 202 6 1254 821 158 0 40 chr12 87803365 87803517 -33454013 - B1_Mus2 SINE Alu 0 147 2 6 1254 694 232 11 45 chr12 87803517 87803678 -33453852 - B3 SINE B2 -15 201 46 6 1254 315 274 88 137 chr12 87804700 87804879 -33452651 - ID_B1 SINE B4 -74 218 46 6 1254 543 244 7 15 chr12 87806094 87806231 -33451299 - B1_Mur1 SINE Alu -1 148 13 6 1254 736 288 9 27 chr12 87806233 87806454 -33451076 - ID_B1 SINE B4 -7 217 1 6 1254 21 36 0 0 chr12 87806918 87806946 -33450584 + AT_rich Low_complexity Low_complexity 1 28 0 6 1254 183 129 0 0 chr12 87807392 87807423 -33450107 + (TCCCC)n Simple_repeat Simple_repeat 1 31 0 6 1254 278 235 46 69 chr12 87807694 87807781 -33449749 - B4A SINE B4 -5 287 203 6 1254 728 168 37 22 chr12 87807781 87807915 -33449615 + B1_Mur2 SINE Alu 1 136 -13 6 1254 324 0 0 0 chr12 87807915 87807951 -33449579 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1254 207 0 0 0 chr12 87808010 87808033 -33449497 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 6 1254 1011 75 0 0 chr12 87808033 87808166 -33449364 + B1_Mm SINE Alu 5 137 -10 6 1254 266 0 29 0 chr12 87808167 87808201 -33449329 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 6 1254 227 302 0 16 chr12 87808219 87808283 -33449247 + GA-rich Low_complexity Low_complexity 4 66 0 6 1254 546 204 9 0 chr12 87809640 87809753 -33447777 - B1_Mus1 SINE Alu 0 148 35 6 1254 795 158 0 0 chr12 87810127 87810260 -33447270 + B1_Mur1 SINE Alu 2 134 -15 6 1254 214 192 38 19 chr12 87810267 87810320 -33447210 + PB1 SINE Alu 8 61 -66 6 1254 494 211 19 0 chr12 87810461 87810565 -33446965 + B1_Mus2 SINE Alu 42 147 0 6 1254 235 321 0 0 chr12 87812349 87812433 -33445097 + C-rich Low_complexity Low_complexity 1 84 0 6 1254 444 271 86 0 chr12 87812961 87813101 -33444429 - RSINE1 SINE B4 -12 153 2 6 1254 312 241 63 0 chr12 87813269 87813348 -33444182 + RSINE1 SINE B4 3 86 -79 6 1254 442 269 10 0 chr12 87813433 87813537 -33443993 - PB1D9 SINE Alu -1 119 15 6 1254 1232 34 0 0 chr12 87813538 87813686 -33443844 + B1_Mus1 SINE Alu 1 148 0 6 1254 699 182 0 0 chr12 87813751 87813877 -33443653 - B1_Mur2 SINE Alu -15 134 9 6 1254 270 0 0 0 chr12 87814859 87814889 -33442641 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1254 402 226 103 9 chr12 87815046 87815162 -33442368 - B1_Mur1 SINE Alu 0 149 23 6 1254 260 218 0 18 chr12 87815322 87815378 -33442152 + B1_Mur1 SINE Alu 74 128 -21 6 1254 295 299 38 31 chr12 87815878 87816037 -33441493 + MamRep605 Unknown Unknown 115 274 -602 6 1254 246 281 103 26 chr12 87816238 87816355 -33441175 + MamRep605 Unknown Unknown 625 750 -126 6 1254 295 191 11 43 chr12 87816743 87816821 -33440709 - B1F SINE Alu -52 98 18 6 1254 414 298 37 37 chr12 87816871 87817007 -33440523 - RSINE1 SINE B4 -19 146 11 6 1254 189 0 0 0 chr12 87817384 87817405 -33440125 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1254 499 183 21 0 chr12 87817625 87817718 -33439812 + B1_Mus2 SINE Alu 2 96 -51 6 1254 293 194 48 16 chr12 87818016 87818079 -33439451 + PB1 SINE Alu 29 93 -34 6 1254 334 222 74 0 chr12 87818139 87818159 -33439371 - B3 SINE B2 -42 174 88 6 1254 447 335 45 93 chr12 87818159 87818220 -33439310 - B4 SINE B4 -13 279 226 6 156 198 0 0 0 chr12 87818220 87818242 -33439288 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1255 729 139 16 0 chr12 87818245 87818367 -33439163 - B1_Mur3 SINE Alu -5 144 21 6 1255 525 279 26 66 chr12 87818367 87818470 -33439060 - ID_B1 SINE B4 -67 222 4 6 1255 388 221 16 96 chr12 87818504 87818629 -33438901 - PB1D7 SINE Alu -1 119 5 6 1255 279 309 12 0 chr12 87818658 87818739 -33438791 + ID4_ SINE ID 1 82 -1 6 1255 234 220 0 33 chr12 87820067 87820128 -33437402 + GA-rich Low_complexity Low_complexity 1 59 0 6 1255 1060 48 0 39 chr12 87820390 87820543 -33436987 + B1_Mus2 SINE Alu 1 147 0 6 1255 406 187 206 0 chr12 87820579 87820686 -33436844 - B1_Mur3 SINE Alu -14 135 7 6 1255 320 136 60 15 chr12 87820775 87820842 -33436688 + ID_B1 SINE B4 148 217 -7 6 1255 326 297 35 109 chr12 87820791 87820850 -33436680 + MT2B LTR ERVL 125 283 -316 6 1255 643 195 0 0 chr12 87820850 87820963 -33436567 + B1_Mur4 SINE Alu 22 134 -16 6 1255 180 77 0 0 chr12 87820965 87820991 -33436539 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 6 1255 239 174 27 68 chr12 87821369 87821443 -33436087 - ID2 SINE ID -11 72 2 7 1255 331 299 90 77 chr12 87821538 87821694 -33435836 - RSINE1 SINE B4 0 165 8 7 1255 277 86 17 17 chr12 87821783 87821842 -33435688 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 7 1255 262 309 124 0 chr12 87821926 87822023 -33435507 - PB1D10 SINE Alu -6 111 3 7 1255 567 43 0 0 chr12 87822233 87822303 -33435227 + (TTTTC)n Simple_repeat Simple_repeat 4 73 0 7 1255 1101 51 132 6 chr12 87822304 87822463 -33435067 - B2_Mm2 SINE B2 -14 181 3 7 1255 302 320 0 10 chr12 87822644 87822742 -33434788 - B1F SINE Alu -29 120 24 7 1255 189 0 0 0 chr12 87823295 87823316 -33434214 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1255 1063 58 0 0 chr12 87823316 87823453 -33434077 - B1_Mus2 SINE Alu -10 137 1 7 1255 447 259 45 0 chr12 87823483 87823595 -33433935 - RSINE1 SINE B4 -31 134 18 7 1255 425 295 119 0 chr12 87823692 87823885 -33433645 - ID_B1 SINE B4 -4 220 5 7 1255 331 132 0 0 chr12 87824865 87824918 -33432612 - MIRc SINE MIR -114 154 102 7 1255 339 127 0 0 chr12 87826080 87826140 -33431390 + PB1D7 SINE Alu 66 142 -7 7 1255 283 164 0 52 chr12 87826089 87826147 -33431383 + ID_B1 SINE B4 170 224 0 7 1255 428 174 112 60 chr12 87826262 87826378 -33431152 + RSINE1 SINE B4 2 123 -42 7 1255 645 49 0 0 chr12 87826385 87826466 -33431064 + (GA)n Simple_repeat Simple_repeat 2 82 0 7 1255 2980 42 48 0 chr12 87826873 87827251 -33430279 - MTA_Mm LTR MaLR 0 396 1 7 1255 247 277 46 6 chr12 87827591 87827702 -33429828 - PB1D10 SINE Alu -1 119 3 7 1255 402 256 87 73 chr12 87827762 87827981 -33429549 - ID_B1 SINE B4 -2 222 1 7 1255 406 226 33 57 chr12 87827982 87828101 -33429429 - ID_B1 SINE B4 -2 222 107 7 1255 495 244 0 16 chr12 87828101 87828220 -33429310 + RSINE1 SINE B4 1 117 -48 7 1255 270 0 0 0 chr12 87828220 87828250 -33429280 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1255 21 36 0 0 chr12 87828260 87828288 -33429242 + AT_rich Low_complexity Low_complexity 1 28 0 7 1255 548 170 123 0 chr12 87828334 87828440 -33429090 - PB1D9 SINE Alu 0 120 2 7 1255 573 111 222 0 chr12 87828451 87828559 -33428971 - B1_Mur4 SINE Alu -5 145 14 7 1255 1129 88 0 0 chr12 87828602 87828750 -33428780 - B1_Mus1 SINE Alu 0 148 1 7 1255 1037 68 0 39 chr12 87828752 87828905 -33428625 - B1_Mus1 SINE Alu 0 148 2 7 1255 470 222 137 42 chr12 87830190 87830387 -33427143 - B3 SINE B2 0 216 7 7 1255 206 327 0 0 chr12 87830518 87830573 -33426957 + (CGTG)n Simple_repeat Simple_repeat 3 57 0 7 1255 2287 116 69 16 chr12 87831019 87831396 -33426134 - MTC LTR MaLR -24 397 1 7 1255 263 247 69 23 chr12 87832954 87833041 -33424489 - RLTR20D LTR ERVK -108 460 370 7 1255 191 318 93 12 chr12 87834496 87834582 -33422948 + MIR SINE MIR 55 147 -61 7 1255 252 0 0 0 chr12 87834698 87834726 -33422804 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1255 187 270 47 16 chr12 87835042 87835106 -33422424 + L2 LINE L2 1474 1539 -1880 7 1255 246 265 14 29 chr12 87835112 87835182 -33422348 - ID4 SINE ID -7 76 8 7 1255 259 209 231 0 chr12 87835183 87835274 -33422256 - PB1 SINE Alu -14 113 2 7 1255 838 176 0 13 chr12 87835361 87835511 -33422019 - B1_Mur4 SINE Alu -2 148 1 7 1255 342 0 0 0 chr12 87835823 87835861 -33421669 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1255 420 261 118 0 chr12 87835866 87835985 -33421545 - RSINE1 SINE B4 -22 143 11 7 1255 285 296 68 0 chr12 87836161 87836249 -33421281 - PB1D7 SINE Alu 0 120 27 7 1255 269 82 112 0 chr12 87836377 87836427 -33421103 - B1_Mur2 SINE Alu -2 147 61 7 1255 312 245 37 60 chr12 87836455 87836576 -33420954 + PB1D9 SINE Alu 2 120 0 7 1255 483 238 87 0 chr12 87836577 87836703 -33420827 - B3A SINE B2 -15 183 47 7 1255 324 0 0 0 chr12 87837075 87837111 -33420419 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1255 590 188 76 30 chr12 87837381 87837513 -33420017 - B1_Mus2 SINE Alu -9 138 1 7 1255 228 348 111 16 chr12 87837513 87837703 -33419827 + L2 LINE L2 2792 2999 -420 7 1255 1841 175 42 47 chr12 87838578 87838979 -33418551 + MTD LTR MaLR 1 399 -20 7 1255 615 250 29 23 chr12 87839253 87839425 -33418105 - ID_B1 SINE B4 -14 210 38 7 1255 264 109 0 0 chr12 87840184 87840230 -33417300 - B1_Mur4 SINE Alu 0 150 105 7 1255 7291 14 0 0 chr12 87840439 87841278 -33416252 + MERVL-int LTR ERVL 2203 3041 -2444 7 1255 488 288 16 8 chr12 87841280 87841406 -33416124 - B1F SINE Alu -19 130 4 7 1255 359 306 35 63 chr12 87841406 87841423 -33416107 - ID_B1 SINE B4 -19 205 67 7 1255 257 173 132 24 chr12 87841787 87841870 -33415660 - L1MD2 LINE L1 -10 6349 6258 7 1255 189 0 0 0 chr12 87841898 87841919 -33415611 + (TA)n Simple_repeat Simple_repeat 1 21 0 7 1255 234 0 0 0 chr12 87842133 87842159 -33415371 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1255 258 32 0 0 chr12 87842412 87842443 -33415087 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 1255 243 0 0 0 chr12 87842443 87842469 -33415061 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1255 439 274 0 9 chr12 87842618 87842732 -33414798 - ID_B1 SINE B4 -20 204 92 7 1255 1066 75 7 0 chr12 87843318 87843465 -33414065 + B1_Mus1 SINE Alu 1 148 0 7 1255 694 248 24 43 chr12 87844355 87844562 -33412968 + ID_B1 SINE B4 1 203 -21 7 1255 397 156 12 61 chr12 87844589 87844671 -33412859 - MER5A DNA MER1_type -105 84 7 7 1255 311 286 144 86 chr12 87845317 87845504 -33412026 + ID_B1 SINE B4 3 200 -24 7 1255 820 237 32 27 chr12 87846038 87846259 -33411271 - ID_B1 SINE B4 -1 223 2 7 1255 240 35 0 0 chr12 87846577 87846606 -33410924 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 7 1255 925 25 0 0 chr12 87846606 87846724 -33410806 - B1_Mus1 SINE Alu -4 144 27 7 1255 1104 124 51 0 chr12 87847695 87847872 -33409658 + B2_Mm2 SINE B2 2 187 -8 7 1255 359 282 131 25 chr12 87849087 87849247 -33408283 + MIR SINE MIR 8 184 -78 7 1255 472 246 0 0 chr12 87849362 87849472 -33408058 + B1F2 SINE Alu 6 115 -34 7 1255 189 0 0 0 chr12 87849483 87849504 -33408026 + (CTTG)n Simple_repeat Simple_repeat 1 21 0 7 1255 808 223 24 33 chr12 87849663 87849876 -33407654 - B3 SINE B2 -5 211 1 7 1255 367 331 43 25 chr12 87850328 87850489 -33407041 - Tigger7 DNA MER2_type -2149 342 179 7 1255 312 346 127 14 chr12 87851415 87851635 -33405895 - MIR SINE MIR 0 262 18 7 1255 779 128 7 36 chr12 87852425 87852563 -33404967 - B1_Mus2 SINE Alu -6 141 8 7 1255 205 167 0 0 chr12 87852968 87853004 -33404526 + C-rich Low_complexity Low_complexity 6 41 0 7 1255 220 265 167 12 chr12 87853635 87853719 -33403811 - PB1D10 SINE Alu -20 97 1 7 1255 182 340 19 57 chr12 87854042 87854148 -33403382 - MIRc SINE MIR -122 146 45 7 1255 2219 147 49 22 chr12 87854190 87854600 -33402930 - MTC LTR MaLR 0 421 1 7 1255 835 247 138 43 chr12 87855651 87855977 -33401553 - ORR1E LTR MaLR -2 357 1 7 1255 21 0 0 0 chr12 87856168 87856189 -33401341 + AT_rich Low_complexity Low_complexity 1 21 0 7 1255 284 258 33 33 chr12 87856259 87856351 -33401179 - MIR SINE MIR -106 156 65 7 1255 545 240 0 37 chr12 87856357 87856491 -33401039 + B1_Mus2 SINE Alu 18 146 -1 7 1255 355 256 0 34 chr12 87856644 87856733 -33400797 + B1_Mus2 SINE Alu 61 146 -1 7 1255 197 224 0 75 chr12 87857087 87857140 -33400390 + MIRb SINE MIR 27 75 -193 7 1255 712 205 109 24 chr12 87857140 87857305 -33400225 + B3A SINE B2 1 179 -19 7 1255 223 204 23 0 chr12 87857433 87857477 -33400053 + MIR SINE MIR 217 261 -1 7 1255 217 151 0 36 chr12 87857816 87857871 -33399659 + C-rich Low_complexity Low_complexity 5 57 0 7 1255 589 252 14 7 chr12 87858093 87858233 -33399297 - B1F1 SINE Alu -7 142 2 7 1255 230 220 0 39 chr12 87862727 87862779 -33394751 + ID4_ SINE ID 28 77 -6 7 1255 185 35 0 65 chr12 87863596 87863627 -33393903 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1255 1056 76 7 7 chr12 87863627 87863773 -33393757 - B1_Mus2 SINE Alu 0 147 2 7 1255 318 88 44 0 chr12 87863936 87864004 -33393526 + (TTTTTG)n Simple_repeat Simple_repeat 2 72 0 7 1255 298 268 68 23 chr12 87864649 87864737 -33392793 + Tigger7 DNA MER2_type 27 118 -2373 7 1255 320 231 104 19 chr12 87864730 87864827 -33392703 + Tigger7 DNA MER2_type 2271 2378 -113 7 1255 306 73 0 0 chr12 87864827 87864868 -33392662 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1255 502 219 0 19 chr12 87865107 87865120 -33392410 - B1_Mm SINE Alu 0 147 136 7 1255 261 0 0 0 chr12 87865120 87865149 -33392381 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 7 1255 502 219 0 19 chr12 87865149 87865242 -33392288 - B1_Mm SINE Alu -12 135 43 7 1255 772 150 0 16 chr12 87865240 87865253 -33392277 - B1_Mm SINE Alu 0 147 136 7 1255 225 0 0 0 chr12 87865253 87865278 -33392252 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 1255 772 150 0 16 chr12 87865278 87865393 -33392137 - B1_Mm SINE Alu -12 135 21 7 1255 1272 85 0 11 chr12 87865404 87865582 -33391948 - B2_Mm2 SINE B2 -19 176 1 7 1255 487 299 0 99 chr12 87865630 87865801 -33391729 - RSINE1 SINE B4 -5 160 7 7 1255 606 297 30 0 chr12 87868057 87868222 -33389308 - B3A SINE B2 -27 171 2 7 1255 213 175 0 0 chr12 87868280 87868320 -33389210 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 7 1255 577 287 60 0 chr12 87868321 87868471 -33389059 - RSINE1 SINE B4 -4 161 3 7 1255 310 286 0 0 chr12 87868483 87868553 -33388977 - PB1D10 SINE Alu -44 73 4 8 1255 4070 57 2 9 chr12 87868596 87869143 -33388387 - L1Md_F2 LINE L1 -1 6581 6039 8 1255 820 336 68 29 chr12 87869449 87869563 -33387967 + L1MA4A LINE L1 5257 5366 -937 8 1255 1179 163 5 23 chr12 87869563 87869783 -33387747 + B3 SINE B2 1 216 0 8 1255 820 336 68 29 chr12 87869783 87870318 -33387212 + L1MA4A LINE L1 5367 5931 -372 8 1255 528 134 307 7 chr12 87870477 87870608 -33386922 + B2_Mm2 SINE B2 7 177 -18 8 1255 315 49 0 0 chr12 87870648 87870689 -33386841 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 8 1255 497 284 0 0 chr12 87870696 87870812 -33386718 - ID_B1 SINE B4 -9 215 100 8 1255 361 321 45 8 chr12 87870812 87870823 -33386707 - B1F1 SINE Alu -4 140 9 8 1255 619 308 35 5 chr12 87871129 87871331 -33386199 + ID_B1 SINE B4 1 208 -16 8 1255 672 102 0 0 chr12 87871335 87871433 -33386097 + (GGAA)n Simple_repeat Simple_repeat 1 98 0 8 1255 512 230 99 80 chr12 87871834 87871985 -33385545 + ID_B1 SINE B4 70 223 -1 8 1255 1066 289 74 88 chr12 87872337 87872944 -33384586 - L1M2 LINE L1 -863 5280 4690 8 1255 1165 109 6 6 chr12 87872944 87872960 -33384570 - B2_Mm2 SINE B2 -19 176 160 8 1255 270 0 0 0 chr12 87872960 87872990 -33384540 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 8 1255 1165 109 6 6 chr12 87872990 87873148 -33384382 - B2_Mm2 SINE B2 -36 159 2 8 1255 1199 103 11 16 chr12 87873149 87873336 -33384194 - B2_Mm2 SINE B2 -8 187 2 8 1255 1066 289 74 88 chr12 87873336 87873520 -33384010 - L1M2 LINE L1 -1454 4689 4501 8 1255 382 258 49 94 chr12 87873606 87873829 -33383701 - L1M2 LINE L1 -1635 4508 4296 8 1255 387 202 11 33 chr12 87873860 87873952 -33383578 - B4A SINE B4 -2 290 201 8 1255 821 174 0 6 chr12 87873956 87874118 -33383412 + CT-rich Low_complexity Low_complexity 1 161 0 8 1255 447 113 0 0 chr12 87874101 87874172 -33383358 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 8 1255 653 128 101 31 chr12 87874182 87874311 -33383219 - B1_Mus2 SINE Alu 0 147 10 8 1255 715 254 91 5 chr12 87874310 87874496 -33383034 - B4A SINE B4 -78 214 13 8 1255 829 270 72 109 chr12 87874588 87874970 -33382560 - L1M2 LINE L1 -1762 4118 3707 8 1255 984 128 0 0 chr12 87874970 87875118 -33382412 - B1_Mus1 SINE Alu 0 148 1 8 1255 829 263 49 115 chr12 87875118 87875264 -33382266 - L1M2 LINE L1 -2409 3734 3598 8 1255 558 278 72 31 chr12 87875395 87875588 -33381942 - B4A SINE B4 -86 206 6 8 1255 37 23 0 0 chr12 87875626 87875670 -33381860 + AT_rich Low_complexity Low_complexity 1 44 0 8 1255 438 20 0 0 chr12 87875683 87875734 -33381796 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1255 653 184 66 7 chr12 87875748 87875885 -33381645 - RSINE1 SINE B4 -19 146 2 8 1255 189 0 0 0 chr12 87875952 87875973 -33381557 + (TC)n Simple_repeat Simple_repeat 2 22 0 8 1255 213 114 29 0 chr12 87875973 87876008 -33381522 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1255 294 144 24 63 chr12 87876009 87876135 -33381395 + (TCTCTG)n Simple_repeat Simple_repeat 6 126 0 8 1255 1102 75 0 0 chr12 87876200 87876346 -33381184 - B1_Mus2 SINE Alu 0 147 2 8 1255 912 282 129 35 chr12 87877723 87877891 -33379639 + MTE2a LTR MaLR 4 161 -218 8 1255 471 18 0 0 chr12 87877891 87877947 -33379583 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1255 912 282 129 35 chr12 87877947 87878120 -33379410 + MTE2a LTR MaLR 162 376 -3 8 1255 2514 149 137 19 chr12 87878309 87878822 -33378708 - RMER15 LTR ERVL 0 575 3 8 1255 464 270 44 38 chr12 87879924 87880082 -33377448 + MIR SINE MIR 31 189 -73 8 1255 1212 167 4 22 chr12 87880370 87880597 -33376933 - URR1B DNA MER1_type -1 224 2 8 1255 377 356 126 5 chr12 87880944 87881150 -33376380 - MIR SINE MIR -3 259 29 8 1255 289 224 81 12 chr12 87881567 87881653 -33375877 + MIRc SINE MIR 113 204 -64 8 1255 375 301 47 35 chr12 87882348 87882517 -33375013 + LTR16E1 LTR ERVL 335 505 -33 8 1255 625 144 47 12 chr12 87883886 87884055 -33373475 + GA-rich Low_complexity Low_complexity 1 175 0 8 1255 1937 147 3 9 chr12 87884709 87885024 -33372506 - MTC LTR MaLR 0 421 109 8 1255 361 43 0 0 chr12 87885027 87885073 -33372457 + MTD LTR MaLR 374 419 0 8 1255 834 278 25 17 chr12 87885352 87885590 -33371940 + B4 SINE B4 2 241 -51 8 1255 245 250 0 30 chr12 87885637 87885654 -33371876 + G-rich Low_complexity Low_complexity 6 22 0 8 1255 1826 169 67 17 chr12 87885654 87886014 -33371516 + ORR1C1 LTR MaLR 1 378 0 8 1255 245 250 0 30 chr12 87886014 87886062 -33371468 + G-rich Low_complexity Low_complexity 23 68 0 8 1255 1106 63 0 0 chr12 87888154 87888297 -33369233 + B1_Mus2 SINE Alu 5 147 0 8 1255 964 166 108 49 chr12 87888359 87888562 -33368968 - B3 SINE B2 -1 215 1 8 1255 429 20 0 0 chr12 87890068 87890118 -33367412 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1255 342 0 0 0 chr12 87890118 87890155 -33367375 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 1255 1438 195 183 12 chr12 87890155 87890477 -33367053 + RLTR14 LTR ERV1 6 382 0 8 1255 426 39 0 0 chr12 87890486 87890538 -33366992 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1255 366 23 0 0 chr12 87890538 87890580 -33366950 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1255 717 281 97 15 chr12 87890826 87891032 -33366498 - MLT1A1 LTR MaLR -184 224 2 8 1255 750 261 137 31 chr12 87891127 87891420 -33366110 + RMER5 LTR ERV1 75 398 -136 8 1255 455 295 97 66 chr12 87891421 87891617 -33365913 + B3 SINE B2 1 202 -14 8 1255 270 0 0 0 chr12 87891617 87891647 -33365883 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 8 1255 689 241 7 7 chr12 87891658 87891804 -33365726 + RMER5 LTR ERV1 389 534 0 8 1255 441 250 0 0 chr12 87892264 87892344 -33365186 + B4A SINE B4 3 82 -210 8 1255 568 120 0 0 chr12 87892510 87892585 -33364945 + tRNA-Met-i tRNA tRNA 1 75 0 8 1255 1121 96 7 0 chr12 87892597 87892743 -33364787 + B1_Mus1 SINE Alu 2 148 0 8 1255 817 178 0 16 chr12 87892744 87892800 -33364730 + polypurine Low_complexity Low_complexity 1 56 0 8 1255 1326 78 0 0 chr12 87892800 87892980 -33364550 + (GGA)n Simple_repeat Simple_repeat 1 180 0 8 1255 817 178 0 16 chr12 87892980 87893003 -33364527 + polypurine Low_complexity Low_complexity 57 79 0 8 1255 1008 117 6 22 chr12 87893003 87893186 -33364344 + (GGA)n Simple_repeat Simple_repeat 1 180 0 8 1255 817 178 0 16 chr12 87893186 87893288 -33364242 + polypurine Low_complexity Low_complexity 80 178 0 8 1255 273 196 0 0 chr12 87893290 87893346 -33364184 + GA-rich Low_complexity Low_complexity 3 58 0 8 1255 480 238 10 29 chr12 87893346 87893450 -33364080 + B3 SINE B2 113 214 -2 8 1255 23 0 0 0 chr12 87893456 87893479 -33364051 + AT_rich Low_complexity Low_complexity 1 23 0 8 1255 402 21 0 0 chr12 87893985 87894032 -33363498 + (GAAA)n Simple_repeat Simple_repeat 4 50 0 8 1255 588 185 42 8 chr12 87894793 87894913 -33362617 + B1_Mur1 SINE Alu 18 141 -8 8 1255 401 288 83 0 chr12 87895273 87895405 -33362125 + B1F SINE Alu 7 149 0 8 1255 795 142 96 7 chr12 87895508 87895643 -33361887 + B1_Mus1 SINE Alu 2 148 0 8 1255 287 225 14 27 chr12 87897573 87897584 -33359946 + ID SINE ID 71 80 -144 8 1255 380 175 0 0 chr12 87897584 87897647 -33359883 + B1_Mur4 SINE Alu 1 63 -87 8 1255 1168 189 193 10 chr12 87898139 87898439 -33359091 + ORR1E LTR MaLR 5 359 0 8 1255 797 98 115 0 chr12 87898761 87898883 -33358647 + B1_Mur2 SINE Alu 8 143 -6 8 1255 380 221 95 109 chr12 87898769 87898916 -33358614 + B4A SINE B4 105 249 -43 8 1255 878 223 69 5 chr12 87899953 87900156 -33357374 - B3 SINE B2 0 216 1 8 1255 450 269 11 0 chr12 87900325 87900418 -33357112 - ID_B1 SINE B4 -127 97 4 8 1255 367 276 45 84 chr12 87900401 87900439 -33357091 + B4 SINE B4 56 87 -205 8 1255 592 305 0 7 chr12 87900439 87900581 -33356949 + B1F2 SINE Alu 1 141 -8 8 1255 275 134 30 0 chr12 87900594 87900661 -33356869 + (TCTCTG)n Simple_repeat Simple_repeat 6 74 0 8 1255 654 271 73 41 chr12 87900680 87900817 -33356713 - B3A SINE B2 -14 202 69 8 1255 3612 23 0 0 chr12 87900817 87901213 -33356317 + MTA_Mm LTR MaLR 1 396 0 8 1255 654 256 86 40 chr12 87901213 87901280 -33356250 - B3A SINE B2 -130 68 1 8 1255 825 54 0 0 chr12 87902203 87902314 -33355216 + (TC)n Simple_repeat Simple_repeat 2 112 0 8 1255 366 307 3 1 chr12 87902400 87902489 -33355041 - RSINE1 SINE B4 -199 93 5 8 1255 324 0 0 0 chr12 87902509 87902545 -33354985 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 1255 240 333 56 47 chr12 87902680 87902787 -33354743 - B4A SINE B4 0 292 185 8 1255 607 156 22 0 chr12 87902824 87902959 -33354571 + CT-rich Low_complexity Low_complexity 4 141 0 8 1255 390 345 85 11 chr12 87902959 87903135 -33354395 - RLTR11A2 LTR ERVK -269 258 70 8 1255 351 307 34 0 chr12 87903215 87903303 -33354227 + B1F SINE Alu 7 97 -52 8 1255 2230 190 48 33 chr12 87903315 87903832 -33353698 - RLTR11A2 LTR ERVK -2 525 1 8 1255 282 56 0 0 chr12 87904327 87904363 -33353167 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 8 1255 422 79 16 0 chr12 87904382 87904445 -33353085 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 1255 812 158 7 70 chr12 87904445 87904588 -33352942 - B1_Mur4 SINE Alu -14 136 3 8 1255 350 286 75 8 chr12 87904943 87905077 -33352453 - Charlie1a DNA MER1_type -874 581 439 8 1255 500 143 31 31 chr12 87905121 87905280 -33352250 + (TG)n Simple_repeat Simple_repeat 2 160 0 8 1255 598 294 13 32 chr12 87905324 87905482 -33352048 + RSINE1 SINE B4 3 157 -8 8 1255 297 0 0 0 chr12 87905612 87905645 -33351885 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 8 1255 1163 56 21 0 chr12 87905645 87905781 -33351749 - B1_Mus1 SINE Alu -7 141 3 8 1255 306 0 0 0 chr12 87905782 87905816 -33351714 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 8 1255 740 163 0 0 chr12 87905825 87905948 -33351582 + B1_Mur2 SINE Alu 17 139 -10 8 1255 24 32 0 0 chr12 87905959 87905990 -33351540 + AT_rich Low_complexity Low_complexity 1 31 0 8 1255 753 190 0 0 chr12 87906013 87906192 -33351338 + CT-rich Low_complexity Low_complexity 2 180 0 9 1255 430 225 22 33 chr12 87906239 87906331 -33351199 - B3A SINE B2 -107 91 1 9 1255 472 313 126 46 chr12 87906358 87906619 -33350911 - Charlie1a DNA MER1_type -1160 295 14 8 1255 526 275 0 8 chr12 87907223 87907344 -33350186 - ID_B1 SINE B4 -18 206 87 9 1255 1194 75 0 0 chr12 87907632 87907778 -33349752 - B1_Mus2 SINE Alu 0 147 2 9 1255 394 243 67 19 chr12 87907778 87907883 -33349647 + PB1D7 SINE Alu 8 117 -3 9 1255 784 120 118 15 chr12 87907912 87908047 -33349483 + B1_Mur4 SINE Alu 1 149 -1 9 1255 207 0 0 0 chr12 87908185 87908208 -33349322 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 9 1255 242 316 25 74 chr12 87908216 87908418 -33349112 - RMER17B LTR ERVK -448 510 319 9 1255 266 47 47 0 chr12 87908861 87908904 -33348626 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 9 1255 225 0 0 0 chr12 87909119 87909144 -33348386 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1255 858 316 69 58 chr12 87909164 87909524 -33348006 + MT2A LTR ERVL 159 522 -11 9 1255 410 111 0 40 chr12 87909952 87910027 -33347503 + GA-rich Low_complexity Low_complexity 4 75 0 9 1255 563 286 81 14 chr12 87911434 87911643 -33345887 - MER70B LTR ERVL -355 223 1 9 1255 247 274 16 0 chr12 87912005 87912067 -33345463 - MER5A1 DNA MER1_type -71 95 33 9 1255 821 240 83 0 chr12 87912114 87912318 -33345212 + B4A SINE B4 1 221 -71 9 1255 363 23 0 0 chr12 87912338 87912382 -33345148 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1255 306 0 0 0 chr12 87912382 87912415 -33345115 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1255 479 252 56 0 chr12 87912416 87912523 -33345007 - RSINE1 SINE B4 -50 115 3 9 1255 252 306 8 47 chr12 87913538 87913665 -33343865 - MLT1C LTR MaLR -23 444 323 9 1255 348 280 50 68 chr12 87913731 87913892 -33343638 - L1MB5 LINE L1 -301 5873 5716 9 1255 298 294 96 18 chr12 87915220 87915386 -33342144 - L1MB7 LINE L1 -291 5893 5715 9 1255 561 311 37 43 chr12 87916540 87916728 -33340802 - MLT1D LTR MaLR -17 488 302 9 1255 363 290 102 77 chr12 87916750 87917045 -33340485 - B4A SINE B4 -9 283 2 9 1255 230 340 65 9 chr12 87917125 87917232 -33340298 - MLT1D LTR MaLR -291 336 224 9 1255 180 0 0 0 chr12 87917867 87917887 -33339643 + (GA)n Simple_repeat Simple_repeat 1 20 0 9 1255 235 275 0 42 chr12 87918305 87918377 -33339153 - Cheshire DNA MER1_type 0 2420 2352 9 1255 228 270 32 0 chr12 87918387 87918450 -33339080 - Cheshire DNA MER1_type -2187 233 173 9 1255 299 200 0 0 chr12 87918520 87918575 -33338955 - MT2A LTR ERVL -72 461 407 9 1255 456 231 38 9 chr12 87918586 87918691 -33338839 - MT2A LTR ERVL -169 364 257 9 1255 378 0 0 0 chr12 87918788 87918830 -33338700 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1255 549 204 0 0 chr12 87918854 87918952 -33338578 - MTE2b LTR MaLR -281 98 1 9 1255 372 299 35 56 chr12 87919561 87919687 -33337843 + B1_Mus2 SINE Alu 8 134 -13 9 1255 225 0 0 0 chr12 87919687 87919712 -33337818 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1255 372 299 35 56 chr12 87919712 87919727 -33337803 + B1_Mus2 SINE Alu 135 146 -1 9 1255 23 0 0 0 chr12 87920043 87920066 -33337464 + AT_rich Low_complexity Low_complexity 1 23 0 9 1255 218 390 31 39 chr12 87920335 87920463 -33337067 - MIRb SINE MIR -86 182 56 9 1255 1160 242 65 86 chr12 87920518 87920889 -33336641 - MTEa LTR MaLR -16 363 1 9 1255 708 145 112 22 chr12 87920923 87921057 -33336473 - ORR1D1 LTR MaLR 0 374 229 9 1255 302 80 20 0 chr12 87922111 87922161 -33335369 + (ATTG)n Simple_repeat Simple_repeat 2 52 0 9 1255 553 279 158 0 chr12 87922263 87922446 -33335084 - MLT1A0 LTR MaLR -12 353 142 9 1255 984 106 0 0 chr12 87922570 87922749 -33334781 + (GA)n Simple_repeat Simple_repeat 2 180 0 9 1255 345 212 15 0 chr12 87923334 87923400 -33334130 - MTE2b LTR MaLR -2 377 311 9 1255 1138 239 89 17 chr12 87923469 87923771 -33333759 - MTE2b LTR MaLR -43 336 13 9 1255 515 311 18 18 chr12 87924151 87924318 -33333212 - MIRb SINE MIR -36 232 66 9 1255 449 343 65 5 chr12 87924680 87924879 -33332651 - MLT1D LTR MaLR -21 484 274 9 1255 1148 276 51 51 chr12 87925056 87925308 -33332222 + MLT2B3 LTR ERVL 27 278 -276 9 1255 2242 133 90 11 chr12 87925308 87925664 -33331866 - ORR1C2 LTR MaLR 0 384 1 9 1255 1148 276 51 51 chr12 87925664 87925762 -33331768 + MLT2B3 LTR ERVL 279 377 -177 9 1255 180 154 0 93 chr12 87927388 87927431 -33330099 + L3 LINE CR1 3846 3884 -605 9 1255 346 301 151 39 chr12 87927623 87927855 -33329675 + L1MC4 LINE L1 1492 1749 -4466 9 1255 378 0 0 0 chr12 87928207 87928249 -33329281 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1255 434 169 11 174 chr12 87929470 87929735 -33327795 + Lx9 LINE L1 7414 7635 -9 9 1255 669 248 0 60 chr12 87929765 87929915 -33327615 + B1_Mur1 SINE Alu 9 149 0 9 1255 398 344 102 15 chr12 87930255 87930521 -33327009 + L1MC4 LINE L1 5123 5411 -803 9 1255 1678 246 77 101 chr12 87930608 87931241 -33326289 + RMER20B LTR ERVK 10 627 0 9 1255 1700 251 13 16 chr12 87932303 87932683 -33324847 - MTE2b LTR MaLR 0 379 1 9 1255 1752 140 63 11 chr12 87932816 87933164 -33324366 - ORR1A2 LTR MaLR -8 386 8 9 1255 477 95 60 0 chr12 87933132 87933216 -33324314 - ORR1A4 LTR MaLR -240 89 1 9 1255 270 292 22 22 chr12 87934234 87934325 -33323205 - MIRb SINE MIR -63 205 115 9 1255 529 293 43 22 chr12 87934432 87934617 -33322913 + MER53 DNA hAT 3 191 -2 9 1255 824 181 71 0 chr12 87936189 87936344 -33321186 - B3 SINE B2 -2 214 49 9 1255 668 211 9 0 chr12 87936379 87936493 -33321037 - B1_Mur1 SINE Alu -34 115 1 9 1255 270 0 0 0 chr12 87936521 87936551 -33320979 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1255 670 248 20 7 chr12 87936555 87936701 -33320829 - RSINE1 SINE B4 -14 151 4 9 1255 794 262 17 0 chr12 87937103 87937275 -33320255 - MTE2a LTR MaLR -9 370 196 9 1255 918 224 242 10 chr12 87937303 87937601 -33319929 + ORR1B1 LTR MaLR 1 367 -27 9 1255 1199 104 33 5 chr12 87937595 87937618 -33319912 - B2_Mm1a SINE B2 -4 189 162 9 1255 288 0 0 0 chr12 87937618 87937650 -33319880 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 9 1255 1199 104 33 5 chr12 87937650 87937810 -33319720 - B2_Mm1a SINE B2 -32 161 2 9 1255 286 167 0 20 chr12 87937810 87937854 -33319676 + ORR1B1 LTR MaLR 342 384 0 9 1255 711 260 17 29 chr12 87937854 87937952 -33319578 - MTE2a LTR MaLR -195 184 86 9 1255 288 0 0 0 chr12 87937952 87937984 -33319546 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1255 711 260 17 29 chr12 87937984 87938057 -33319473 - MTE2a LTR MaLR -294 85 16 9 1255 950 242 10 0 chr12 87938064 87938262 -33319268 + B3 SINE B2 1 200 -16 9 1255 222 37 0 0 chr12 87938275 87938302 -33319228 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1255 184 253 53 84 chr12 87938697 87938792 -33318738 + MIRb SINE MIR 108 199 -69 9 1255 278 271 129 0 chr12 87938812 87938897 -33318633 + B4A SINE B4 195 290 -2 9 1255 574 315 0 0 chr12 87938939 87939082 -33318448 + B1F1 SINE Alu 1 143 -6 9 1255 2269 176 141 53 chr12 87939588 87939686 -33317844 - RMER1B Other Other -3 1063 947 9 1255 270 0 0 0 chr12 87939686 87939716 -33317814 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1255 3129 179 119 50 chr12 87939716 87940459 -33317071 - RMER1A Other Other -120 946 105 9 1255 324 159 13 32 chr12 87940470 87940582 -33316948 - B2_Mm2 SINE B2 0 195 47 9 1255 1044 99 97 24 chr12 87940652 87940817 -33316713 - B2_Mm1t SINE B2 -14 179 3 9 1255 329 295 61 55 chr12 87941207 87941405 -33316125 - MIRb SINE MIR -37 231 26 9 1255 390 301 79 6 chr12 87941690 87941854 -33315676 + MER5B DNA MER1_type 1 176 -2 9 1255 892 126 0 49 chr12 87941928 87942070 -33315460 - B1_Mur3 SINE Alu -13 136 2 9 1255 513 186 23 0 chr12 87942216 87942302 -33315228 + ID SINE ID 2 89 -135 9 1255 243 265 60 0 chr12 87942280 87942363 -33315167 + MLT1A1 LTR MaLR 321 408 0 9 1255 874 125 15 0 chr12 87942619 87942755 -33314775 + B1_Mus1 SINE Alu 11 148 0 9 1255 450 307 106 24 chr12 87942863 87943070 -33314460 - MER21B LTR ERV1 -121 742 519 9 1255 544 309 22 22 chr12 87943482 87943621 -33313909 + B3 SINE B2 54 192 -24 9 1255 198 0 0 0 chr12 87944500 87944522 -33313008 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1255 181 320 216 0 chr12 87944933 87945030 -33312500 + MIRb SINE MIR 79 196 -72 9 1255 216 67 0 0 chr12 87945109 87945139 -33312391 + (TCCG)n Simple_repeat Simple_repeat 3 32 0 9 1255 276 303 0 0 chr12 87945983 87946161 -33311369 + (CA)n Simple_repeat Simple_repeat 1 178 0 9 1255 488 288 153 21 chr12 87946961 87947202 -33310328 + B4 SINE B4 1 273 -19 9 1255 258 32 0 0 chr12 87947223 87947254 -33310276 + (TATG)n Simple_repeat Simple_repeat 4 34 0 9 1255 408 20 0 0 chr12 87947287 87947336 -33310194 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1255 600 40 0 0 chr12 87947963 87948038 -33309492 + (TC)n Simple_repeat Simple_repeat 2 76 0 9 1255 389 322 89 58 chr12 87948213 87948470 -33309060 - MLT2B2 LTR ERVL -44 471 207 9 1255 358 244 106 130 chr12 87948469 87948684 -33308846 - MTEa LTR MaLR -4 380 174 9 1255 369 207 138 0 chr12 87948684 87948771 -33308759 + PB1D10 SINE Alu 2 100 -17 9 1255 243 0 0 0 chr12 87948782 87948809 -33308721 + (AGGGGG)n Simple_repeat Simple_repeat 2 28 0 9 1255 777 22 0 0 chr12 87948809 87948899 -33308631 + (GAA)n Simple_repeat Simple_repeat 1 91 0 9 1255 612 106 0 0 chr12 87948899 87948993 -33308537 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 9 1256 360 0 0 0 chr12 87949696 87949736 -33307794 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1256 657 308 71 0 chr12 87949978 87950173 -33307357 + B4A SINE B4 1 209 -83 9 1256 259 196 0 0 chr12 87950173 87950219 -33307311 + MTE2b LTR MaLR 1 46 -333 9 1256 2280 89 9 66 chr12 87950219 87950568 -33306962 - ORR1A4 LTR MaLR 0 329 1 9 1256 704 253 45 7 chr12 87950568 87950760 -33306770 + MTE2b LTR MaLR 42 237 -142 9 1256 264 316 66 0 chr12 87951059 87951135 -33306395 + B4A SINE B4 205 285 -7 9 1256 268 227 66 13 chr12 87951137 87951213 -33306317 - MLT1L LTR MaLR -528 82 3 9 1256 193 385 59 8 chr12 87951602 87951720 -33305810 + L2c LINE L2 2702 2825 -594 9 1256 206 118 0 0 chr12 87952195 87952229 -33305301 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 9 1256 385 308 19 0 chr12 87952341 87952448 -33305082 + PB1D10 SINE Alu 1 109 -8 1 1256 672 268 48 0 chr12 87952456 87952624 -33304906 + ID_B1 SINE B4 3 178 -46 1 1256 186 359 110 8 chr12 87953035 87953153 -33304377 + L2c LINE L2 3258 3387 0 9 1256 332 300 48 53 chr12 87953235 87953461 -33304069 + MIR SINE MIR 35 256 -6 1 1256 180 111 0 0 chr12 87954404 87954431 -33303099 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1256 417 290 77 90 chr12 87955448 87955775 -33301755 + MLT1C LTR MaLR 61 462 -5 1 1256 725 220 34 68 chr12 87956334 87956539 -33300991 + B3A SINE B2 1 198 0 1 1256 690 255 151 50 chr12 87956596 87956906 -33300624 - MLT1A0 LTR MaLR -19 371 1 1 1256 441 0 0 0 chr12 87957306 87957355 -33300175 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1256 396 213 43 57 chr12 87957502 87957628 -33299902 - MLT1A1 LTR MaLR -2 406 240 1 1256 326 346 32 19 chr12 87957657 87957801 -33299729 - MLT1A1 LTR MaLR -235 173 31 1 1256 235 316 62 21 chr12 87957996 87958093 -33299437 + MIRc SINE MIR 73 173 -95 1 1256 2161 170 191 5 chr12 87958469 87958918 -33298612 - MT2A LTR ERVL 0 533 1 1 1256 292 233 181 19 chr12 87959076 87959181 -33298349 + RLTR25B LTR ERVK 388 509 -519 1 1256 764 95 0 0 chr12 87959119 87959224 -33298306 + B1_Mus2 SINE Alu 43 147 0 1 1256 520 281 147 5 chr12 87961960 87962157 -33295373 + RMER15 LTR ERVL 337 561 -14 1 1256 227 282 141 0 chr12 87963050 87963121 -33294409 - MIRb SINE MIR -151 117 37 1 1256 461 226 65 9 chr12 87963750 87963857 -33293673 - MIRm SINE MIR -130 146 34 1 1256 1400 171 158 22 chr12 87964986 87965122 -33292408 + ORR1B2 LTR MaLR 2 142 -225 1 1256 660 13 0 0 chr12 87965122 87965199 -33292331 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1256 1400 171 158 22 chr12 87965199 87965384 -33292146 + ORR1B2 LTR MaLR 143 367 0 1 1256 338 264 225 14 chr12 87965668 87965810 -33291720 - MIR SINE MIR -34 228 57 1 1256 823 203 45 87 chr12 87965819 87966016 -33291514 + B3 SINE B2 25 212 -4 1 1256 269 299 48 82 chr12 87966089 87966139 -33291391 - RSINE1 SINE B4 0 165 120 1 1256 1083 112 3 0 chr12 87966139 87966315 -33291215 + (TG)n Simple_repeat Simple_repeat 1 179 -124 1 1256 1083 112 3 0 chr12 87966321 87966441 -33291089 + (TG)n Simple_repeat Simple_repeat 180 303 0 1 1256 269 299 48 82 chr12 87966441 87966529 -33291001 - RSINE1 SINE B4 -52 113 25 1 1256 233 268 26 9 chr12 87966921 87967034 -33290496 + CT-rich Low_complexity Low_complexity 2 116 0 1 1256 1061 143 191 0 chr12 87968197 87968386 -33289144 + URR1B DNA MER1_type 1 225 0 1 1256 453 209 119 37 chr12 87968454 87968563 -33288967 - ID_B1 SINE B4 -23 201 84 1 1256 1220 192 5 0 chr12 87968836 87969044 -33288486 + B3 SINE B2 5 213 -3 1 1256 453 36 0 0 chr12 87969338 87969393 -33288137 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1256 299 313 128 13 chr12 87970053 87970202 -33287328 + MIRb SINE MIR 26 191 -77 1 1256 398 290 123 0 chr12 87970335 87970473 -33287057 + MIRb SINE MIR 40 194 -74 1 1256 477 0 0 0 chr12 87970496 87970549 -33286981 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1256 362 357 39 9 chr12 87971227 87971441 -33286089 + MIRc SINE MIR 34 259 -9 1 1256 298 378 61 13 chr12 87971706 87971934 -33285596 + MIRb SINE MIR 19 257 -11 1 1256 29 47 0 0 chr12 87972081 87972124 -33285406 + AT_rich Low_complexity Low_complexity 1 43 0 1 1256 223 214 35 18 chr12 87972825 87972882 -33284648 + (TGGG)n Simple_repeat Simple_repeat 3 60 0 1 1256 730 162 12 0 chr12 87972882 87973042 -33284488 + (TGGA)n Simple_repeat Simple_repeat 1 162 0 1 1256 339 291 96 91 chr12 87973115 87973312 -33284218 + MTEb LTR MaLR 181 378 -1 1 1256 401 274 70 9 chr12 87973359 87973473 -33284057 + B1F SINE Alu 13 133 -16 1 1256 22 35 0 0 chr12 87973473 87973502 -33284028 + AT_rich Low_complexity Low_complexity 1 29 0 1 1256 626 305 13 7 chr12 87973511 87973666 -33283864 + RSINE1 SINE B4 2 157 -8 1 1256 545 76 13 0 chr12 87974575 87974654 -33282876 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 1 1256 318 50 0 0 chr12 87974657 87974697 -33282833 + (CATA)n Simple_repeat Simple_repeat 4 43 0 1 1256 286 286 105 14 chr12 87974735 87974939 -33282591 - MLT2B4 LTR ERVL -288 268 7 1 1256 724 248 49 6 chr12 87975379 87975541 -33281989 + B3 SINE B2 1 169 -47 1 1256 763 228 5 11 chr12 87975604 87975754 -33281776 + ID_B1 SINE B4 85 225 -67 1 1256 408 149 0 0 chr12 87975754 87975848 -33281682 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1 1256 916 255 28 66 chr12 87976027 87976313 -33281217 - B4 SINE B4 -16 276 2 1 1256 216 243 162 0 chr12 87977309 87977383 -33280147 - L2b LINE L2 -1 3374 3289 1 1256 1064 270 148 58 chr12 87977709 87978248 -33279282 + Charlie7 DNA MER1_type 113 700 -1912 1 1256 447 229 17 0 chr12 87978541 87978716 -33278814 + (CACCAT)n Simple_repeat Simple_repeat 3 180 0 1 1256 240 277 25 0 chr12 87978730 87978889 -33278641 + (CACCAT)n Simple_repeat Simple_repeat 3 165 0 1 1256 360 0 0 0 chr12 87978983 87979023 -33278507 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1256 998 95 13 20 chr12 87979470 87979620 -33277910 + B1_Mur3 SINE Alu 1 149 0 1 1256 783 156 0 0 chr12 87979638 87979779 -33277751 + GA-rich Low_complexity Low_complexity 4 144 0 1 1256 3949 55 2 4 chr12 87979849 87980340 -33277190 + L1Md_F2 LINE L1 6093 6582 0 1 1256 545 295 31 31 chr12 87980789 87980950 -33276580 - RSINE1 SINE B4 0 165 5 1 1256 229 147 64 9 chr12 87981076 87981186 -33276344 + (TA)n Simple_repeat Simple_repeat 2 117 0 1 1256 252 227 28 39 chr12 87981195 87981322 -33276208 + (TATAA)n Simple_repeat Simple_repeat 2 126 0 1 1256 2696 71 78 11 chr12 87981322 87981693 -33275837 + MTA_Mm LTR MaLR 1 396 0 1 1256 252 227 28 39 chr12 87981693 87981744 -33275786 + (TATAA)n Simple_repeat Simple_repeat 2 52 0 1 1256 201 108 0 0 chr12 87983100 87983137 -33274393 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1 1256 899 212 50 47 chr12 87983167 87983489 -33274041 - RLTR15 LTR ERVK -36 323 1 1 1256 858 184 0 7 chr12 87983501 87983643 -33273887 - B1_Mus1 SINE Alu -6 142 2 1 1256 792 0 0 0 chr12 87983758 87983846 -33273684 + (GAA)n Simple_repeat Simple_repeat 1 88 0 1 1256 35 0 0 0 chr12 87984093 87984128 -33273402 + AT_rich Low_complexity Low_complexity 1 35 0 1 1256 879 215 144 19 chr12 87984330 87984586 -33272944 + B4A SINE B4 5 292 0 1 1256 546 277 171 60 chr12 87984609 87984989 -33272541 + Charlie1a DNA MER1_type 1033 1454 -1 1 1256 749 280 88 18 chr12 87985149 87985422 -33272108 + B4A SINE B4 1 292 0 1 1256 247 232 41 55 chr12 87985507 87985580 -33271950 + B4 SINE B4 208 279 -13 1 1256 21 0 0 0 chr12 87986336 87986357 -33271173 + AT_rich Low_complexity Low_complexity 1 21 0 1 1256 487 293 104 98 chr12 87986824 87986921 -33270609 - B4A SINE B4 -2 290 208 1 1256 942 182 144 0 chr12 87986921 87987102 -33270428 - B3 SINE B2 -8 208 2 1 1256 487 293 104 98 chr12 87987102 87987199 -33270331 - B4A SINE B4 -85 207 105 1 1256 351 0 0 0 chr12 87987199 87987238 -33270292 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1256 487 293 104 98 chr12 87987238 87987329 -33270201 - B4A SINE B4 -188 104 3 1 1256 341 268 61 91 chr12 87988952 87989149 -33268381 + LTR37A LTR ERV1 15 205 -221 1 1256 712 234 49 100 chr12 87989183 87989409 -33268121 - ID_B1 SINE B4 0 224 25 1 1256 684 317 18 35 chr12 87989461 87989690 -33267840 + Tigger5 DNA MER2_type 37 261 -2145 1 1256 1518 182 56 104 chr12 87989706 87990099 -33267431 - ORR1D1 LTR MaLR 0 374 1 1 1256 1405 258 51 18 chr12 87990101 87990433 -33267097 + MTD LTR MaLR 46 388 -31 1 1256 471 316 14 91 chr12 87990510 87990719 -33266811 + Tigger5 DNA MER2_type 2137 2329 -77 1 1256 420 304 77 19 chr12 87990722 87990930 -33266600 + LTR37A LTR ERV1 204 423 -3 1 1256 578 242 37 143 chr12 87991019 87991236 -33266294 + B3A SINE B2 2 195 0 1 1256 225 0 0 0 chr12 87991352 87991377 -33266153 + (TCC)n Simple_repeat Simple_repeat 1 25 0 1 1256 503 167 0 13 chr12 87992127 87992206 -33265324 - LFSINE_Vert SINE SINE -93 366 289 1 1256 521 287 144 0 chr12 87993172 87993346 -33264184 + MER110A LTR ERV1 52 250 -218 1 1256 192 301 103 41 chr12 87993667 87993764 -33263766 - MIR3 SINE MIR -7 201 99 1 1256 1195 39 0 48 chr12 87994072 87994259 -33263271 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 1 1256 797 35 0 104 chr12 87994259 87994451 -33263079 + (GGAAA)n Simple_repeat Simple_repeat 5 176 0 1 1256 291 99 47 47 chr12 87994452 87994537 -33262993 + GA-rich Low_complexity Low_complexity 2 86 0 1 1256 211 260 0 125 chr12 87994593 87994681 -33262849 + B1_Mur4 SINE Alu 52 128 -22 1 1256 1280 172 23 0 chr12 87994851 87995072 -33262458 + URR1A DNA MER1_type 1 226 0 1 1256 454 308 68 36 chr12 87995249 87995468 -33262062 - MER34A LTR ERV1 -359 228 3 1 1256 744 124 0 0 chr12 87996074 87996179 -33261351 + U6 snRNA snRNA 1 105 -2 1 1256 375 262 44 67 chr12 87996208 87996343 -33261187 + RMER5 LTR ERV1 117 248 -286 1 1256 557 211 27 25 chr12 87996283 87996403 -33261127 - B1_Mus1 SINE Alu -28 119 1 1 1256 1033 271 72 13 chr12 87996403 87996708 -33260822 + RMER5 LTR ERV1 201 523 -11 1 1256 424 232 13 0 chr12 87997428 87997579 -33259951 + (TA)n Simple_repeat Simple_repeat 2 154 0 1 1256 239 177 54 0 chr12 87997590 87997720 -33259810 + (TA)n Simple_repeat Simple_repeat 2 138 0 1 1256 292 179 16 57 chr12 87997723 87997847 -33259683 + (TATAA)n Simple_repeat Simple_repeat 2 120 0 1 1256 4004 124 159 8 chr12 87998763 87999403 -33258127 - RMER19A LTR ERVK 0 737 1 1 1256 235 356 56 37 chr12 87999873 87999981 -33257549 - L2c LINE L2 -1 3386 3277 1 1256 320 303 60 15 chr12 88000801 88000935 -33256595 + MER34 LTR ERV1 31 170 -372 1 1256 493 242 0 0 chr12 88000987 88001082 -33256448 + ID_B1 SINE B4 116 210 -14 2 1256 489 34 0 0 chr12 88001083 88001142 -33256388 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 3 1256 987 161 0 0 chr12 88001143 88001323 -33256207 + GA-rich Low_complexity Low_complexity 1 180 0 4 1256 728 251 56 28 chr12 88001399 88001612 -33255918 + MER34 LTR ERV1 288 506 -36 1 1256 796 229 12 17 chr12 88001611 88001784 -33255746 + B4 SINE B4 46 217 -75 5 1256 522 31 0 0 chr12 88001784 88001848 -33255682 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1256 486 250 35 35 chr12 88001849 88001990 -33255540 - MER34 LTR ERV1 -401 141 1 7 1256 306 214 274 28 chr12 88002243 88002349 -33255181 + RSINE1 SINE B4 34 165 0 8 1256 445 299 8 25 chr12 88002585 88002705 -33254825 - ORSL DNA Tip100 0 275 158 9 1256 1457 148 0 5 chr12 88003048 88003272 -33254258 + URR1B DNA MER1_type 3 225 0 1 1256 326 275 66 0 chr12 88003727 88003818 -33253712 - L2a LINE L2 -9 3417 3321 1 1256 2316 178 5 51 chr12 88004138 88004571 -33252959 + MTC LTR MaLR 1 413 -8 1 1256 198 0 0 0 chr12 88004578 88004600 -33252930 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1256 423 285 162 78 chr12 88004636 88004944 -33252586 - ORR1E LTR MaLR -4 355 22 1 1256 377 265 48 109 chr12 88005933 88006098 -33251432 - L1M5 LINE L1 -1389 4757 4603 1 1256 459 248 143 0 chr12 88006105 88006210 -33251320 + B1_Mur1 SINE Alu 10 129 -20 1 1256 243 0 0 0 chr12 88006237 88006264 -33251266 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 1256 438 20 0 0 chr12 88006264 88006314 -33251216 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1256 321 306 0 0 chr12 88006315 88006423 -33251107 - L1MC LINE L1 -1532 4614 4507 1 1256 302 300 11 11 chr12 88007391 88007482 -33250048 - MTEb LTR MaLR -2 377 287 2 1256 1540 68 5 0 chr12 88007663 88007855 -33249675 - B2_Mm1a SINE B2 0 193 1 2 1256 1286 268 7 4 chr12 88008103 88008384 -33249146 - B4 SINE B4 -2 290 9 2 1256 23 33 0 0 chr12 88008442 88008472 -33249058 + AT_rich Low_complexity Low_complexity 1 30 0 2 1256 1176 233 0 19 chr12 88008528 88008742 -33248788 - B3 SINE B2 -1 215 6 2 1256 387 0 0 0 chr12 88008773 88008816 -33248714 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1256 529 233 35 0 chr12 88008835 88008951 -33248579 - RSINE1 SINE B4 -42 123 4 2 1256 1267 234 91 74 chr12 88010188 88010552 -33246978 + MTE2a LTR MaLR 10 379 0 2 1256 1326 284 57 3 chr12 88010553 88010920 -33246610 + MTE2a-int LTR MaLR 3 389 -1191 2 1256 381 93 0 0 chr12 88010968 88011022 -33246508 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1256 1112 115 0 0 chr12 88011030 88011178 -33246352 - B1_Mus1 SINE Alu 0 148 1 2 1256 834 239 203 14 chr12 88011178 88011445 -33246085 + MTE2a-int LTR MaLR 1261 1580 0 2 1256 1056 242 15 202 chr12 88011450 88011809 -33245721 + MTE2a LTR MaLR 10 303 -76 2 1256 1100 215 9 57 chr12 88011809 88012036 -33245494 + B3 SINE B2 1 216 0 3 1256 1056 242 15 202 chr12 88012036 88012131 -33245399 + MTE2a LTR MaLR 304 379 0 2 1256 631 301 26 7 chr12 88012465 88012619 -33244911 - RSINE1 SINE B4 -5 160 4 3 1256 523 292 73 0 chr12 88012623 88012760 -33244770 - ID_B1 SINE B4 -2 222 76 3 1256 198 337 59 68 chr12 88012761 88012934 -33244596 + MIR3 SINE MIR 77 259 -17 3 1256 525 183 0 11 chr12 88013977 88014071 -33243459 + B3 SINE B2 1 93 -123 3 1256 535 233 26 11 chr12 88014068 88014197 -33243333 + B3 SINE B2 58 195 -3 3 1256 256 308 29 36 chr12 88014257 88014395 -33243135 + MER5B DNA MER1_type 20 156 -22 3 1256 532 269 2 19 chr12 88014571 88014701 -33242829 + ID_B1 SINE B4 81 201 -23 3 1256 338 326 58 22 chr12 88014777 88014915 -33242615 + MER3 DNA MER1_type 20 162 -47 3 1256 3295 123 157 35 chr12 88015060 88015675 -33241855 - RMER6C LTR ERVK 0 690 1 3 1256 796 174 15 0 chr12 88015819 88015951 -33241579 + B1_Mur1 SINE Alu 2 135 -14 4 1256 1212 79 0 0 chr12 88015968 88016133 -33241397 + (GAA)n Simple_repeat Simple_repeat 3 167 0 4 1256 845 242 65 37 chr12 88016362 88016577 -33240953 - ID_B1 SINE B4 -3 221 1 4 1256 212 286 17 53 chr12 88016699 88016793 -33240737 + MIRb SINE MIR 37 133 -143 4 1256 471 287 284 50 chr12 88017223 88017664 -33239866 - MLT1G3 LTR MaLR -51 544 1 4 1256 272 251 86 13 chr12 88017711 88017831 -33239699 + MIRm SINE MIR 42 167 -41 4 1256 563 244 62 8 chr12 88018091 88018219 -33239311 + B1_Mur1 SINE Alu 14 148 -1 4 1256 824 196 189 6 chr12 88018205 88018385 -33239145 + MTD LTR MaLR 193 405 -14 4 1256 312 27 0 0 chr12 88018422 88018459 -33239071 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1256 571 221 62 80 chr12 88018935 88019097 -33238433 + B4 SINE B4 62 220 -72 4 1256 1135 49 0 0 chr12 88018961 88019103 -33238427 + B1_Mus1 SINE Alu 7 148 0 5 1256 699 120 0 0 chr12 88019105 88019213 -33238317 + (GGAA)n Simple_repeat Simple_repeat 3 110 0 5 1256 329 321 86 32 chr12 88019213 88019373 -33238157 - MIR3 SINE MIR -23 185 19 5 1256 189 0 0 0 chr12 88019642 88019663 -33237867 + (CGCGG)n Simple_repeat Simple_repeat 1 21 0 5 1256 207 213 0 32 chr12 88020156 88020219 -33237311 + C-rich Low_complexity Low_complexity 1 61 0 5 1256 231 36 0 0 chr12 88021007 88021035 -33236495 + (CTG)n Simple_repeat Simple_repeat 3 30 0 5 1256 189 323 62 116 chr12 88021902 88022014 -33235516 + L2c LINE L2 3275 3380 -7 5 1256 360 0 0 0 chr12 88022074 88022114 -33235416 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1256 512 26 0 49 chr12 88022244 88022325 -33235205 + L1Md_F2 LINE L1 6506 6582 0 5 1256 240 35 0 0 chr12 88022375 88022404 -33235126 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1256 195 231 0 0 chr12 88022713 88022752 -33234778 + MIRc SINE MIR 110 148 -120 6 1256 314 286 11 32 chr12 88025625 88025719 -33231811 - MLT1A1 LTR MaLR 0 408 317 6 1256 939 156 3 3 chr12 88026624 88027023 -33230507 + (TG)n Simple_repeat Simple_repeat 1 399 0 6 1256 958 193 77 46 chr12 88027289 88027550 -33229980 - MTD LTR MaLR -152 269 1 6 1256 239 182 91 0 chr12 88028181 88028247 -33229283 + C-rich Low_complexity Low_complexity 2 73 0 6 1256 208 70 23 23 chr12 88030376 88030420 -33227110 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 1256 398 318 110 18 chr12 88034219 88034446 -33223084 - MER102b DNA MER1_type -12 329 82 6 1256 864 29 0 0 chr12 88034689 88034792 -33222738 + (GGA)n Simple_repeat Simple_repeat 2 104 0 6 1256 26 0 0 0 chr12 88035393 88035419 -33222111 + AT_rich Low_complexity Low_complexity 1 26 0 6 1256 1037 218 84 67 chr12 88040023 88040308 -33217222 + B4 SINE B4 1 290 -2 6 1256 197 320 109 47 chr12 88040622 88040750 -33216780 - MIRm SINE MIR -118 158 23 7 1256 245 29 29 0 chr12 88041861 88041895 -33215635 + (CAG)n Simple_repeat Simple_repeat 1 35 0 7 1256 214 259 17 17 chr12 88042260 88042319 -33215211 + GA-rich Low_complexity Low_complexity 2 60 0 7 1256 420 97 0 0 chr12 88043483 88043545 -33213985 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1256 293 296 139 15 chr12 88043644 88043781 -33213749 - Charlie8 DNA MER1_type -2258 170 17 7 1256 1401 251 137 32 chr12 88044373 88044490 -33213040 + MTE2b-int LTR MaLR 918 1040 -540 7 1256 1330 200 28 161 chr12 88044490 88044919 -33212611 + ORR1D1 LTR MaLR 1 372 -2 7 1256 1401 251 137 32 chr12 88044919 88045190 -33212340 + MTE2b-int LTR MaLR 1041 1351 -229 7 1256 225 0 0 0 chr12 88045190 88045215 -33212315 + (TTG)n Simple_repeat Simple_repeat 2 26 0 7 1256 1401 251 137 32 chr12 88045215 88045228 -33212302 + MTE2b-int LTR MaLR 1352 1362 -218 7 1256 575 190 231 0 chr12 88045268 88045389 -33212141 - B1_Mur1 SINE Alu 0 149 1 7 1256 617 315 41 16 chr12 88045389 88045613 -33211917 + MTE2b-int LTR MaLR 1350 1579 -1 7 1256 485 203 401 9 chr12 88045614 88045867 -33211663 + MTE2b LTR MaLR 1 379 0 7 1256 1530 177 135 24 chr12 88046771 88047148 -33210382 - MTD LTR MaLR 0 419 1 7 1256 628 190 43 0 chr12 88047374 88047490 -33210040 + RSINE1 SINE B4 12 132 -33 8 1256 365 240 25 5 chr12 88047495 88047594 -33209936 + B1_Mur1 SINE Alu 50 148 -1 8 1256 608 150 132 8 chr12 88047599 88047720 -33209810 + B1_Mur4 SINE Alu 15 150 0 8 1256 343 285 81 114 chr12 88047740 88047956 -33209574 + L1M4 LINE L1 3373 3598 -2548 8 1256 1030 103 14 7 chr12 88047956 88048102 -33209428 - B1_Mus1 SINE Alu 0 148 2 8 1256 343 285 81 114 chr12 88048102 88048316 -33209214 + L1M4 LINE L1 3599 3789 -2357 8 1256 3126 199 73 7 chr12 88048364 88049194 -33208336 + L1_Mur3 LINE L1 2179 3063 -2817 8 1256 780 40 20 0 chr12 88049212 88049313 -33208217 + B1_Mus1 SINE Alu 31 133 -15 8 1256 310 142 316 9 chr12 88049353 88049402 -33208128 + L1_Mur3 LINE L1 3072 3144 -2736 8 1256 189 0 0 0 chr12 88049402 88049423 -33208107 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 8 1256 310 142 316 9 chr12 88049423 88049487 -33208043 + L1_Mur3 LINE L1 3145 3220 -2660 8 1256 303 223 64 104 chr12 88049487 88049513 -33208017 + MT2B LTR ERVL 138 158 -443 8 1256 591 196 18 0 chr12 88049513 88049625 -33207905 + B1_Mus2 SINE Alu 2 115 -32 8 1256 752 209 140 38 chr12 88049635 88049733 -33207797 + L1_Mur3 LINE L1 3273 3366 -2514 8 1256 809 163 85 0 chr12 88049733 88049862 -33207668 - B1_Mur1 SINE Alu -8 141 2 9 1256 752 209 140 38 chr12 88049862 88050056 -33207474 + L1_Mur3 LINE L1 3367 3595 -2285 8 1256 233 329 23 12 chr12 88050058 88050073 -33207457 - B4A SINE B4 -205 87 1 9 1256 581 70 0 0 chr12 88050073 88050144 -33207386 - B2_Mm2 SINE B2 -124 71 1 9 1256 635 105 218 0 chr12 88050887 88051020 -33206510 - Lx3B LINE L1 -1 6972 6811 9 1256 758 253 72 11 chr12 88051117 88051297 -33206233 + B3 SINE B2 24 214 -2 9 1256 1118 203 10 0 chr12 88051569 88051776 -33205754 + B3 SINE B2 3 211 -5 9 1256 362 307 27 63 chr12 88051801 88052021 -33205509 + ID_B1 SINE B4 4 198 -26 9 1256 568 299 0 7 chr12 88051910 88052048 -33205482 + B1F SINE Alu 11 147 -2 9 1256 274 295 135 32 chr12 88052096 88052222 -33205308 + MLT1A0 LTR MaLR 8 146 -219 9 1256 1935 244 70 26 chr12 88052224 88052256 -33205274 + Lx8 LINE L1 6177 6207 -1266 9 1256 2239 113 25 0 chr12 88052256 88052575 -33204955 - ORR1A2 LTR MaLR 0 327 1 1 1256 1935 244 70 26 chr12 88052575 88053114 -33204416 + Lx8 LINE L1 6208 6773 -700 9 1256 2258 174 138 73 chr12 88053186 88053758 -33203772 + RMER19C LTR ERVK 1 609 -2 1 1256 905 146 145 5 chr12 88053970 88054156 -33203374 + B3 SINE B2 4 215 -1 1 1256 474 219 106 28 chr12 88055165 88055306 -33202224 - Lx8 LINE L1 -134 7339 7188 1 1256 186 282 50 25 chr12 88057399 88057479 -33200051 - MIRc SINE MIR -172 96 15 1 1256 911 188 34 0 chr12 88057587 88057763 -33199767 + B3A SINE B2 6 187 -11 1 1256 727 218 21 14 chr12 88058275 88058419 -33199111 + B1_Mm SINE Alu 1 145 -2 1 1256 710 221 79 39 chr12 88058447 88058650 -33198880 + B3 SINE B2 5 215 -1 1 1256 246 253 44 33 chr12 88059395 88059485 -33198045 - L2c LINE L2 -5 3382 3292 1 1256 1329 172 130 3 chr12 88059536 88059821 -33197709 + Lx5 LINE L1 6728 7048 -2 1 1256 233 191 42 21 chr12 88059840 88059888 -33197642 + MIRc SINE MIR 73 121 -147 1 1256 297 381 121 17 chr12 88059942 88060182 -33197348 - MIRb SINE MIR 0 268 4 1 1256 191 167 0 0 chr12 88060185 88060215 -33197315 + L2a LINE L2 3378 3407 -19 1 1256 446 344 97 9 chr12 88060623 88060840 -33196690 + MIR SINE MIR 12 247 -15 1 1256 410 287 61 60 chr12 88061918 88062111 -33195419 + MIRb SINE MIR 31 224 -38 1 1256 338 267 80 80 chr12 88063353 88063516 -33194014 - Charlie15a DNA MER1_type -1 223 61 1 1256 279 368 55 23 chr12 88063528 88063656 -33193874 + MIR3 SINE MIR 31 162 -46 1 1256 306 196 0 0 chr12 88064522 88064578 -33192952 - MIR SINE MIR -21 241 186 1 1256 739 244 71 81 chr12 88064711 88064921 -33192609 - B3 SINE B2 -7 209 2 1 1256 284 228 308 54 chr12 88065618 88065748 -33191782 + RSINE1 SINE B4 3 165 0 1 1256 296 244 77 0 chr12 88065876 88065954 -33191576 + MER20 DNA MER1_type 118 201 -18 1 1256 278 26 26 0 chr12 88066434 88066473 -33191057 + (TAA)n Simple_repeat Simple_repeat 1 40 0 1 1256 32 43 0 0 chr12 88067644 88067690 -33189840 + AT_rich Low_complexity Low_complexity 1 46 0 1 1256 302 291 63 9 chr12 88067718 88067829 -33189701 + MIR3 SINE MIR 40 156 -52 1 1256 211 176 0 0 chr12 88068045 88068079 -33189451 + polypurine Low_complexity Low_complexity 1 34 0 1 1256 1339 182 114 30 chr12 88068245 88068579 -33188951 + ORR1D2 LTR MaLR 1 362 -8 1 1256 411 260 50 10 chr12 88068579 88068680 -33188850 + PB1D9 SINE Alu 1 105 -15 1 1256 249 33 0 0 chr12 88068682 88068712 -33188818 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1 1256 632 151 6 16 chr12 88068716 88068898 -33188632 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1256 214 254 36 0 chr12 88069538 88069593 -33187937 - MER5A DNA MER1_type -48 141 85 1 1256 243 0 0 0 chr12 88069595 88069622 -33187908 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1256 298 53 0 0 chr12 88069625 88069663 -33187867 - B1_Mur4 SINE Alu -6 144 107 1 1256 973 172 72 5 chr12 88069664 88069857 -33187673 + Lx9 LINE L1 6505 6710 -934 1 1256 813 263 72 0 chr12 88070223 88070417 -33187113 + B3 SINE B2 2 209 -7 1 1256 1042 186 108 0 chr12 88070454 88070648 -33186882 + B3 SINE B2 2 216 0 1 1256 417 231 13 0 chr12 88070674 88070752 -33186778 + ID4 SINE ID 5 83 0 1 1256 306 0 0 0 chr12 88070765 88070799 -33186731 + (TAGA)n Simple_repeat Simple_repeat 2 35 0 1 1256 266 284 27 0 chr12 88070815 88070889 -33186641 + ID4 SINE ID 2 77 -6 1 1256 254 267 120 128 chr12 88070889 88071136 -33186394 - MER33 DNA MER1_type -76 248 3 1 1256 21 36 0 0 chr12 88071517 88071545 -33185985 + AT_rich Low_complexity Low_complexity 1 28 0 1 1256 235 224 0 0 chr12 88071836 88071894 -33185636 + T-rich Low_complexity Low_complexity 2 59 0 1 1256 22 0 0 0 chr12 88072032 88072054 -33185476 + AT_rich Low_complexity Low_complexity 1 22 0 1 1256 319 361 32 24 chr12 88072265 88072390 -33185140 - MER58A DNA MER1_type -96 128 3 1 1256 496 335 104 0 chr12 88072471 88072653 -33184877 + MIRb SINE MIR 29 229 -39 1 1256 322 148 0 18 chr12 88072784 88072839 -33184691 + MT2B LTR ERVL 2 55 -546 1 1256 426 154 9 133 chr12 88072823 88072928 -33184602 - MT2A LTR ERVL -441 92 1 1 1256 534 262 119 48 chr12 88072928 88073106 -33184424 + B4A SINE B4 29 221 -71 1 1256 342 0 0 0 chr12 88073106 88073144 -33184386 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1256 1022 174 80 45 chr12 88073147 88073346 -33184184 + B3 SINE B2 2 207 -9 1 1256 387 289 137 64 chr12 88073346 88073410 -33184120 + B4 SINE B4 222 288 -4 1 1256 795 198 192 0 chr12 88073492 88073664 -33183866 - B3 SINE B2 -11 205 1 1 1256 668 245 0 20 chr12 88073712 88073858 -33183672 - RSINE1 SINE B4 -20 145 3 1 1256 436 219 94 9 chr12 88074075 88074181 -33183349 - PB1D10 SINE Alu 0 117 3 1 1256 430 305 82 102 chr12 88074334 88074579 -33182951 + B4 SINE B4 43 282 -10 1 1256 262 282 56 14 chr12 88075838 88075910 -33181620 + MER63D DNA AcHobo 303 377 -684 1 1256 437 293 135 0 chr12 88075949 88076082 -33181448 + B3A SINE B2 1 151 -47 1 1256 330 26 0 0 chr12 88076092 88076131 -33181399 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1256 217 154 26 0 chr12 88076131 88076170 -33181360 + CT-rich Low_complexity Low_complexity 1 40 0 1 1256 183 42 0 0 chr12 88076474 88076498 -33181032 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1256 378 0 0 0 chr12 88077774 88077816 -33179714 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1256 929 203 106 11 chr12 88077865 88078054 -33179476 + B3 SINE B2 9 215 -1 1 1256 1030 151 0 0 chr12 88078083 88078229 -33179301 + B1_Mus1 SINE Alu 3 148 0 1 1256 538 246 16 8 chr12 88078343 88078466 -33179064 - RCHARR1 DNA MER1_type -809 165 42 1 1256 514 309 27 48 chr12 88079428 88079615 -33177915 + B4A SINE B4 7 189 -103 1 1256 541 213 113 16 chr12 88079643 88079767 -33177763 + B1_Mur1 SINE Alu 7 142 -7 1 1256 211 289 0 0 chr12 88079856 88079901 -33177629 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1256 1016 107 0 0 chr12 88079901 88080041 -33177489 + B1_Mur4 SINE Alu 3 142 -8 1 1256 449 296 7 40 chr12 88080107 88080255 -33177275 + ID_B1 SINE B4 78 220 -4 1 1257 868 161 0 80 chr12 88080782 88080944 -33176586 + B1_Mur4 SINE Alu 1 149 -1 1 1257 615 240 56 76 chr12 88081172 88081370 -33176160 - B3A SINE B2 -4 194 1 1 1257 222 136 0 0 chr12 88081382 88081426 -33176104 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1257 383 38 0 19 chr12 88081426 88081480 -33176050 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1257 1090 197 103 4 chr12 88081481 88081715 -33175815 - B4A SINE B4 -27 265 9 1 1257 661 120 37 9 chr12 88083039 88083148 -33174382 - PB1D9 SINE Alu -8 112 1 1 1257 1021 108 14 0 chr12 88083729 88083868 -33173662 + B1_Mur4 SINE Alu 1 141 -9 1 1257 209 33 33 0 chr12 88083870 88083900 -33173630 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 1257 276 193 140 0 chr12 88083946 88084003 -33173527 - ORR1D2 LTR MaLR 0 370 306 1 1257 689 276 75 28 chr12 88084010 88084263 -33173267 + B4A SINE B4 28 292 0 1 1257 728 217 0 3 chr12 88084313 88084618 -33172912 + (CA)n Simple_repeat Simple_repeat 1 303 0 1 1257 21 0 0 0 chr12 88084625 88084646 -33172884 + AT_rich Low_complexity Low_complexity 1 21 0 1 1257 1044 214 38 19 chr12 88085484 88085694 -33171836 - B3 SINE B2 -1 215 2 1 1257 468 0 0 0 chr12 88085810 88085862 -33171668 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1257 480 216 10 10 chr12 88086298 88086401 -33171129 + PB1D10 SINE Alu 5 107 -10 1 1257 279 0 0 0 chr12 88086862 88086893 -33170637 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1257 279 216 99 95 chr12 88086912 88087037 -33170493 - PB1D10 SINE Alu -1 116 3 1 1257 627 178 95 2 chr12 88087121 88087259 -33170271 + B3A SINE B2 2 150 -48 1 1257 400 62 31 0 chr12 88087259 88087323 -33170207 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1257 246 257 76 116 chr12 88087323 88087340 -33170190 + B2_Mm1t SINE B2 143 155 -38 1 1257 858 154 229 0 chr12 88087340 88087482 -33170048 + B3 SINE B2 2 167 -49 1 1257 348 64 0 0 chr12 88087482 88087529 -33170001 + (CATA)n Simple_repeat Simple_repeat 4 50 0 1 1257 858 154 229 0 chr12 88087529 88087561 -33169969 + B3 SINE B2 168 215 -1 1 1257 246 257 76 116 chr12 88087561 88087602 -33169928 + B2_Mm1t SINE B2 156 191 -2 1 1257 855 110 26 52 chr12 88087782 88087935 -33169595 - B1_Mur3 SINE Alu 0 149 1 1 1257 340 268 0 0 chr12 88087986 88088057 -33169473 - ID_B1 SINE B4 -70 154 84 1 1257 520 136 57 0 chr12 88088274 88088362 -33169168 + B3A SINE B2 4 96 -102 1 1257 518 242 156 0 chr12 88088374 88088502 -33169028 + B1F2 SINE Alu 1 148 -1 1 1257 441 36 0 0 chr12 88088573 88088628 -33168902 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1257 1089 236 10 5 chr12 88088628 88088832 -33168698 - ID_B1 SINE B4 -12 212 8 1 1257 602 185 56 0 chr12 88089099 88089207 -33168323 + PB1D9 SINE Alu 2 115 -5 1 1257 344 293 36 12 chr12 88089733 88089899 -33167631 + (TTAGGG)n Simple_repeat Simple_repeat 2 171 0 1 1257 2934 49 0 9 chr12 88090292 88090641 -33166889 - ORR1A0 LTR MaLR 0 346 1 1 1257 5203 50 0 2 chr12 88091887 88092510 -33165020 - L1Md_F2 LINE L1 0 6582 5961 1 1257 899 230 6 6 chr12 88092533 88092695 -33164835 + RSINE1 SINE B4 4 165 0 1 1257 249 208 0 0 chr12 88092695 88092767 -33164763 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1257 757 169 11 11 chr12 88092811 88092990 -33164540 + (CATA)n Simple_repeat Simple_repeat 2 180 0 2 1257 352 267 165 23 chr12 88093672 88093909 -33163621 + L2a LINE L2 3134 3426 0 2 1257 253 211 17 17 chr12 88093909 88093967 -33163563 + (TGGG)n Simple_repeat Simple_repeat 2 59 0 2 1257 1124 120 10 3 chr12 88093974 88094186 -33163344 + (TGGA)n Simple_repeat Simple_repeat 1 213 0 2 1257 1893 214 119 98 chr12 88094186 88094908 -33162622 - RMER19A LTR ERVK 0 737 1 2 1257 206 240 40 23 chr12 88094908 88095054 -33162476 + (TGGA)n Simple_repeat Simple_repeat 2 152 0 2 1257 21 57 0 0 chr12 88095537 88095572 -33161958 + AT_rich Low_complexity Low_complexity 1 35 0 2 1257 422 198 130 11 chr12 88095747 88095839 -33161691 - PB1D9 SINE Alu -16 104 2 2 1257 636 296 44 61 chr12 88096185 88096480 -33161050 - MLT1C LTR MaLR -108 359 70 2 1257 239 159 14 137 chr12 88096466 88096539 -33160991 - MLT1C LTR MaLR -337 130 67 2 1257 460 253 94 54 chr12 88096528 88096701 -33160829 + B4 SINE B4 56 223 -69 2 1257 791 132 68 23 chr12 88096571 88096703 -33160827 + B1_Mur4 SINE Alu 13 150 0 2 1257 1085 219 110 126 chr12 88096731 88097112 -33160418 - MTE2a LTR MaLR 0 379 5 2 1257 239 345 33 25 chr12 88097778 88097900 -33159630 - MLT1A1 LTR MaLR -4 404 282 2 1257 225 0 0 0 chr12 88098047 88098072 -33159458 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1257 763 161 62 0 chr12 88098072 88098202 -33159328 - B1_Mur4 SINE Alu -11 139 2 2 1257 466 287 39 0 chr12 88098853 88098982 -33158548 + B1F SINE Alu 3 136 -13 2 1257 32 26 0 0 chr12 88098982 88099021 -33158509 + AT_rich Low_complexity Low_complexity 1 39 0 2 1257 724 261 0 25 chr12 88099062 88099223 -33158307 + ID_B1 SINE B4 1 157 -67 2 1257 253 205 117 64 chr12 88099166 88099260 -33158270 - YREP_Mm Unknown Unknown -1518 294 196 2 1257 498 83 0 0 chr12 88099665 88099737 -33157793 + (CTTG)n Simple_repeat Simple_repeat 1 72 0 2 1257 1053 107 7 26 chr12 88099766 88099919 -33157611 - B1_Mur4 SINE Alu 0 150 1 2 1257 451 204 0 104 chr12 88100162 88100180 -33157350 + MT2B LTR ERVL 151 156 -445 2 1257 772 107 0 35 chr12 88100180 88100296 -33157234 + B1_Mus2 SINE Alu 2 113 -34 2 1257 359 301 112 16 chr12 88100299 88100424 -33157106 + MIR SINE MIR 109 245 -17 2 1257 436 214 0 104 chr12 88100743 88100761 -33156769 + MT2B LTR ERVL 151 156 -445 2 1257 769 100 0 35 chr12 88100761 88100875 -33156655 + B1_Mus2 SINE Alu 2 111 -36 2 1257 311 214 28 93 chr12 88100805 88100913 -33156617 + RLTR25B LTR ERVK 448 548 -480 2 1257 1162 93 5 66 chr12 88100918 88101105 -33156425 - B2_Mm2 SINE B2 -11 184 9 2 1257 396 0 0 0 chr12 88101105 88101149 -33156381 + (CCA)n Simple_repeat Simple_repeat 2 45 0 2 1257 387 259 9 53 chr12 88101235 88101349 -33156181 + PB1D10 SINE Alu 9 117 0 2 1257 325 312 26 0 chr12 88101359 88101436 -33156094 + ID4_ SINE ID 5 83 0 2 1257 434 329 55 0 chr12 88103943 88104089 -33153441 - RSINE1 SINE B4 -8 157 4 2 1257 317 130 0 18 chr12 88104116 88104171 -33153359 - HAL1-3A_ME LINE L1 -830 2028 1975 2 1257 563 189 0 11 chr12 88104199 88104381 -33153149 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1257 411 247 240 0 chr12 88104393 88104543 -33152987 - B4A SINE B4 -105 187 2 2 1257 4313 139 113 68 chr12 88104795 88105643 -33151887 + RMER19B LTR ERVK 1 886 -16 2 1257 1287 107 11 0 chr12 88105643 88105820 -33151710 + B2_Mm1t SINE B2 1 179 -14 2 1257 250 111 156 0 chr12 88105870 88105915 -33151615 + B2_Mm2 SINE B2 50 101 -94 2 1257 333 0 0 0 chr12 88105940 88105977 -33151553 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 1257 24 32 0 0 chr12 88105977 88106008 -33151522 + AT_rich Low_complexity Low_complexity 1 31 0 2 1257 234 0 0 0 chr12 88106348 88106374 -33151156 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1257 216 0 0 0 chr12 88106420 88106444 -33151086 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1257 288 0 0 0 chr12 88106490 88106522 -33151008 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1257 270 0 0 0 chr12 88106568 88106598 -33150932 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1257 252 0 0 0 chr12 88106644 88106672 -33150858 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1257 243 0 0 0 chr12 88106718 88106745 -33150785 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1257 303 312 146 82 chr12 88106757 88106796 -33150734 + B4 SINE B4 59 143 -149 2 1257 355 241 190 35 chr12 88106796 88106912 -33150618 + B1F SINE Alu 16 149 0 2 1257 303 312 146 82 chr12 88106912 88106977 -33150553 + B4 SINE B4 144 292 0 2 1257 1257 41 0 0 chr12 88107030 88107175 -33150355 + B1_Mm SINE Alu 2 146 -1 2 1257 1116 101 113 0 chr12 88107229 88107397 -33150133 + B2_Mm2 SINE B2 2 188 -7 2 1257 4784 116 13 80 chr12 88107652 88108442 -33149088 + RMER19A LTR ERVK 1 737 0 2 1257 3028 86 2 77 chr12 88109557 88110022 -33147508 + RLTR23 LTR ERV1 1 430 0 2 1257 562 47 23 0 chr12 88110218 88110304 -33147226 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 1257 444 331 48 30 chr12 88110529 88110694 -33146836 + MIRb SINE MIR 49 216 -52 2 1257 734 145 8 31 chr12 88110968 88111096 -33146434 + B1_Mur4 SINE Alu 26 150 0 2 1257 189 0 0 0 chr12 88111613 88111634 -33145896 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 2 1257 414 229 24 0 chr12 88111651 88111734 -33145796 - B1F SINE Alu -63 86 2 2 1257 480 282 141 31 chr12 88111964 88112191 -33145339 + MER21B LTR ERV1 11 262 -601 2 1257 608 119 0 9 chr12 88112397 88112507 -33145023 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 1257 384 360 69 36 chr12 88112533 88112807 -33144723 - B4A SINE B4 -4 288 6 2 1257 295 274 84 79 chr12 88112849 88113027 -33144503 + MER21B LTR ERV1 543 721 -142 2 1257 411 73 0 0 chr12 88113335 88113390 -33144140 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 2 1257 180 111 0 0 chr12 88113390 88113417 -33144113 + (GGGGA)n Simple_repeat Simple_repeat 3 29 0 2 1257 1014 95 0 32 chr12 88113421 88113606 -33143924 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 2 1257 234 0 0 0 chr12 88113733 88113759 -33143771 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1257 367 235 0 12 chr12 88114225 88114307 -33143223 + B3 SINE B2 1 81 -135 2 1257 1279 27 7 0 chr12 88114322 88114468 -33143062 + B1_Mm SINE Alu 1 147 0 2 1257 469 248 80 0 chr12 88114642 88114767 -33142763 + B3A SINE B2 58 192 -6 2 1257 270 0 0 0 chr12 88114770 88114800 -33142730 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2 1257 905 135 15 0 chr12 88114800 88114933 -33142597 - B1_Mur2 SINE Alu -13 136 2 2 1257 3671 28 33 0 chr12 88114937 88115359 -33142171 - RLTR10C LTR ERVK 0 436 1 2 1257 343 122 53 0 chr12 88115618 88115691 -33141839 + PB1D9 SINE Alu 1 85 -35 2 1257 2031 121 3 0 chr12 88115691 88115996 -33141534 + ORR1A2 LTR MaLR 2 307 -20 2 1257 28 29 0 0 chr12 88116077 88116112 -33141418 + AT_rich Low_complexity Low_complexity 1 35 0 2 1257 460 217 37 104 chr12 88116150 88116284 -33141246 - ID_B1 SINE B4 -98 126 2 2 1257 365 171 158 0 chr12 88117907 88117989 -33139541 + B1F2 SINE Alu 11 105 -44 2 1257 1500 63 21 0 chr12 88118028 88118218 -33139312 - B2_Mm2 SINE B2 0 195 2 2 1257 388 173 13 0 chr12 88118446 88118521 -33139009 - ID_B1 SINE B4 0 224 149 2 1257 303 235 48 58 chr12 88118521 88118550 -33138980 - B1_Mur1 SINE Alu 0 149 47 2 1257 563 248 38 0 chr12 88118573 88118706 -33138824 + RSINE1 SINE B4 3 140 -25 2 1257 255 61 0 0 chr12 88118717 88118750 -33138780 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1257 347 304 0 0 chr12 88118795 88118874 -33138656 + ID4_ SINE ID 3 81 -2 2 1257 1375 75 6 0 chr12 88118921 88119095 -33138435 + B2_Mm1t SINE B2 1 175 -18 2 1257 991 154 0 0 chr12 88119761 88119910 -33137620 + B1_Mur4 SINE Alu 2 150 0 2 1257 833 258 0 63 chr12 88119950 88120157 -33137373 + B3A SINE B2 2 195 -3 2 1257 234 286 58 35 chr12 88120132 88120219 -33137311 + B4 SINE B4 67 155 -137 2 1257 250 299 82 44 chr12 88120810 88120992 -33136538 + Charlie10 DNA MER1_type 2633 2821 -1 2 1257 455 157 36 0 chr12 88121111 88121194 -33136336 - B1_Mur4 SINE Alu -64 86 1 2 1257 275 284 87 57 chr12 88121382 88121415 -33136115 - B4A SINE B4 -53 112 82 2 1257 518 0 0 16 chr12 88121415 88121478 -33136052 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2 1257 302 243 25 38 chr12 88121478 88121556 -33135974 - B4 SINE B4 -82 83 5 2 1257 189 107 0 0 chr12 88121583 88121611 -33135919 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1257 345 237 51 135 chr12 88121673 88121829 -33135701 + MT2B LTR ERVL 118 260 -341 2 1257 768 176 0 0 chr12 88121740 88121871 -33135659 + B1_Mur1 SINE Alu 19 149 0 2 1257 270 272 27 0 chr12 88121874 88121905 -33135625 + ORR1D2-int LTR MaLR 604 750 -755 2 1257 530 146 9 80 chr12 88121905 88122017 -33135513 + MT2B LTR ERVL 155 258 -343 2 1257 1038 70 0 7 chr12 88121919 88122062 -33135468 + B1_Mus1 SINE Alu 7 148 0 2 1257 357 311 107 124 chr12 88122091 88122381 -33135149 + B4 SINE B4 8 292 0 2 1257 363 252 35 84 chr12 88122382 88122411 -33135119 - B2_Mm2 SINE B2 -8 187 159 2 1257 349 66 16 16 chr12 88122411 88122473 -33135057 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 2 1257 363 252 35 84 chr12 88122473 88122586 -33134944 - B2_Mm2 SINE B2 -37 158 52 2 1257 634 286 147 31 chr12 88123361 88123653 -33133877 + MLT1D LTR MaLR 13 338 -167 2 1257 364 164 0 48 chr12 88123722 88123805 -33133725 + PB1D10 SINE Alu 38 116 -1 2 1257 1069 57 0 0 chr12 88123915 88124056 -33133474 + B1_Mus2 SINE Alu 7 147 0 2 1257 261 0 0 0 chr12 88124056 88124085 -33133445 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1257 441 272 15 46 chr12 88124630 88124761 -33132769 + ID_B1 SINE B4 81 207 -17 2 1257 356 298 33 60 chr12 88124634 88124784 -33132746 + B1F SINE Alu 4 149 0 2 1257 251 274 0 0 chr12 88124819 88124881 -33132649 + PB1D7 SINE Alu 52 113 -7 2 1257 686 245 90 38 chr12 88125057 88125269 -33132261 - ID_B1 SINE B4 0 224 2 2 1257 182 37 0 36 chr12 88125294 88125322 -33132208 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1257 358 242 178 20 chr12 88125337 88125438 -33132092 - PB1D10 SINE Alu 0 117 1 3 1257 537 299 70 25 chr12 88125467 88125704 -33131826 + MER20 DNA MER1_type 25 251 -532 3 1257 1567 179 151 19 chr12 88125759 88126083 -33131447 + ORR1D2 LTR MaLR 4 370 0 2 1257 342 0 0 0 chr12 88126548 88126586 -33130944 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1257 405 0 0 0 chr12 88126586 88126630 -33130900 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1257 282 266 0 0 chr12 88126642 88126706 -33130824 - RSINE1 SINE B4 -33 132 69 3 1257 200 184 0 0 chr12 88126923 88126961 -33130569 + CT-rich Low_complexity Low_complexity 2 39 0 3 1257 23 33 0 0 chr12 88126961 88126991 -33130539 + AT_rich Low_complexity Low_complexity 1 30 0 3 1257 189 196 0 0 chr12 88126996 88127042 -33130488 + T-rich Low_complexity Low_complexity 1 46 0 3 1257 269 329 10 7 chr12 88127577 88127676 -33129854 - MLT1K LTR MaLR -3 592 464 3 1257 189 0 0 0 chr12 88127988 88128009 -33129521 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1257 228 333 0 43 chr12 88128009 88128103 -33129427 + ID_B1 SINE B4 134 223 -1 3 1257 375 23 0 0 chr12 88128189 88128233 -33129297 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1257 251 299 9 110 chr12 88128521 88128630 -33128900 + MT2B LTR ERVL 155 252 -349 3 1257 533 278 8 16 chr12 88128533 88128661 -33128869 + ID_B1 SINE B4 82 208 -16 3 1257 1172 111 72 0 chr12 88128785 88128965 -33128565 + B2_Mm2 SINE B2 1 193 -2 3 1257 238 50 24 24 chr12 88128985 88129026 -33128504 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 3 1257 1239 48 0 0 chr12 88129226 88129373 -33128157 - B1_Mus2 SINE Alu 0 147 1 3 1257 602 206 119 0 chr12 88129376 88129502 -33128028 - B1_Mus2 SINE Alu -1 146 6 3 1257 180 152 0 0 chr12 88129566 88129599 -33127931 + GA-rich Low_complexity Low_complexity 4 36 0 3 1257 346 200 0 0 chr12 88129755 88129815 -33127715 + PB1D10 SINE Alu 32 91 -26 3 1257 1829 172 25 126 chr12 88129859 88129913 -33127617 - ORR1B1 LTR MaLR 0 394 348 3 1257 1409 74 21 10 chr12 88129913 88130105 -33127425 - B2_Mm2 SINE B2 0 195 2 3 1257 1829 172 25 126 chr12 88130105 88130141 -33127389 - ORR1B1 LTR MaLR -47 347 347 3 1257 911 66 116 0 chr12 88130141 88130262 -33127268 - B1_Mus2 SINE Alu -10 137 3 3 1257 1829 172 25 126 chr12 88130262 88130608 -33126922 - ORR1B1 LTR MaLR -47 347 1 3 1257 204 361 14 0 chr12 88131946 88132018 -33125512 - MIR SINE MIR -90 118 46 3 1257 568 318 11 11 chr12 88132204 88132382 -33125148 + B4A SINE B4 1 178 -114 3 1257 228 242 16 0 chr12 88132466 88132528 -33125002 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1257 180 111 0 0 chr12 88132531 88132558 -33124972 + (CAATA)n Simple_repeat Simple_repeat 2 28 0 3 1257 316 267 58 0 chr12 88132573 88132667 -33124863 + B1F1 SINE Alu 1 108 -12 3 1257 303 93 0 0 chr12 88132667 88132710 -33124820 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 3 1257 23 0 0 0 chr12 88132745 88132768 -33124762 + AT_rich Low_complexity Low_complexity 1 23 0 3 1257 489 240 0 37 chr12 88132796 88132904 -33124626 + PB1D9 SINE Alu 3 106 -14 3 1257 198 0 0 0 chr12 88132904 88132926 -33124604 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1257 790 133 0 45 chr12 88132953 88133067 -33124463 + B1_Mm SINE Alu 18 126 -21 3 1257 2349 128 19 8 chr12 88133067 88133430 -33124100 + ORR1B2 LTR MaLR 1 367 0 3 1257 790 133 0 45 chr12 88133430 88133449 -33124081 + B1_Mm SINE Alu 127 145 -2 3 1257 281 89 0 22 chr12 88133457 88133503 -33124027 + (TTG)n Simple_repeat Simple_repeat 2 46 0 3 1257 303 137 0 0 chr12 88133555 88133606 -33123924 + B1F2 SINE Alu 35 85 -64 3 1257 778 126 3 11 chr12 88133576 88133713 -33123817 - B1_Mus1 SINE Alu -17 132 2 3 1257 565 49 25 0 chr12 88133863 88133944 -33123586 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1257 703 199 67 76 chr12 88135222 88135445 -33122085 - ID_B1 SINE B4 -2 222 2 3 1257 319 325 138 59 chr12 88135449 88135753 -33121777 + MLT1A LTR MaLR 34 361 -13 3 1257 269 291 169 19 chr12 88135836 88135990 -33121540 - MIR SINE MIR -52 210 34 3 1257 1356 102 16 0 chr12 88135993 88136180 -33121350 - B2_Mm2 SINE B2 -2 193 4 3 1257 360 43 0 0 chr12 88137075 88137121 -33120409 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1257 998 98 0 15 chr12 88137689 88137824 -33119706 + B1_Mus1 SINE Alu 4 136 -12 3 1257 816 269 52 63 chr12 88138006 88138292 -33119238 + B4 SINE B4 10 292 0 3 1257 2847 19 6 0 chr12 88138315 88138637 -33118893 + L1Md_A LINE L1 6259 6582 0 3 1257 331 327 35 0 chr12 88139001 88139114 -33118416 + PB1D10 SINE Alu 1 117 0 3 1257 198 0 0 0 chr12 88139279 88139301 -33118229 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1257 619 131 203 65 chr12 88139301 88139424 -33118106 - B1_Mur4 SINE Alu -8 142 3 3 1257 201 214 0 0 chr12 88139467 88139509 -33118021 + MIR SINE MIR 99 140 -122 3 1257 1234 22 0 0 chr12 88139576 88139714 -33117816 - B1_Mus2 SINE Alu -9 138 1 3 1257 710 93 9 0 chr12 88140500 88140608 -33116922 + (GGAA)n Simple_repeat Simple_repeat 1 109 0 3 1257 352 308 149 8 chr12 88140685 88140819 -33116711 + RSINE1 SINE B4 1 153 -12 3 1257 22 0 0 0 chr12 88140826 88140848 -33116682 + AT_rich Low_complexity Low_complexity 1 22 0 3 1257 663 238 71 15 chr12 88140851 88141047 -33116483 - B3 SINE B2 -3 213 7 3 1257 233 89 22 0 chr12 88141073 88141118 -33116412 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1257 697 111 9 9 chr12 88141145 88141254 -33116276 + B1_Mur2 SINE Alu 41 149 0 3 1257 266 89 44 0 chr12 88141708 88141753 -33115777 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 3 1257 414 0 0 0 chr12 88144416 88144462 -33113068 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1257 281 200 189 0 chr12 88144814 88144904 -33112626 + MIRc SINE MIR 38 144 -124 3 1257 501 17 0 0 chr12 88145259 88145317 -33112213 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1257 403 286 26 39 chr12 88145631 88145784 -33111746 + CT-rich Low_complexity Low_complexity 1 151 0 3 1257 289 295 133 11 chr12 88146223 88146404 -33111126 + MIR SINE MIR 41 237 -25 3 1257 440 323 43 12 chr12 88146519 88146682 -33110848 - MIRb SINE MIR -38 230 63 3 1257 221 167 0 0 chr12 88149173 88149215 -33108315 + (CATA)n Simple_repeat Simple_repeat 2 43 0 3 1257 228 67 0 0 chr12 88149215 88149245 -33108285 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 3 1257 480 248 0 74 chr12 88149305 88149440 -33108090 + ID_B1 SINE B4 99 223 -1 3 1257 799 254 38 19 chr12 88150476 88150685 -33106845 + ID_B1 SINE B4 2 214 -10 3 1257 735 250 24 0 chr12 88150754 88150918 -33106612 + B3 SINE B2 1 168 -48 3 1257 952 207 89 5 chr12 88150908 88151122 -33106408 + 7SK RNA RNA 8 239 -92 3 1257 551 194 31 46 chr12 88151131 88151261 -33106269 + B2_Mm2 SINE B2 39 166 -29 3 1257 240 111 0 0 chr12 88151261 88151306 -33106224 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 3 1257 991 189 0 37 chr12 88151327 88151514 -33106016 + B3 SINE B2 29 208 -8 3 1257 371 359 72 74 chr12 88152090 88152481 -33105049 - MLT1C LTR MaLR -5 462 73 3 1257 261 279 14 14 chr12 88152580 88152649 -33104881 - ID4_ SINE ID -13 70 2 3 1257 821 152 0 50 chr12 88152678 88152817 -33104713 - B1_Mus2 SINE Alu -11 136 5 3 1257 198 0 0 0 chr12 88153078 88153100 -33104430 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1257 270 0 0 0 chr12 88154353 88154383 -33103147 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1257 1076 101 0 0 chr12 88154383 88154522 -33103008 - B1_Mus1 SINE Alu -9 139 1 3 1257 781 136 0 0 chr12 88154736 88154861 -33102669 + B1_Mus1 SINE Alu 24 148 0 3 1257 237 65 0 0 chr12 88154949 88154980 -33102550 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1257 1255 28 14 0 chr12 88154982 88155127 -33102403 - B1_Mm SINE Alu 0 147 1 3 1257 489 319 0 22 chr12 88155173 88155311 -33102219 - ID_B1 SINE B4 -2 222 88 3 1257 250 307 31 83 chr12 88155226 88155322 -33102208 - PB1D7 SINE Alu -29 91 1 3 1257 189 0 0 0 chr12 88155346 88155367 -33102163 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1257 1103 96 7 0 chr12 88155367 88155513 -33102017 - B1_Mus2 SINE Alu 0 147 1 3 1257 406 238 142 39 chr12 88156895 88157006 -33100524 + ID_B1 SINE B4 85 213 -11 3 1257 279 0 0 0 chr12 88157006 88157037 -33100493 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1257 406 238 142 39 chr12 88157037 88157052 -33100478 + ID_B1 SINE B4 214 224 0 3 1257 200 318 146 16 chr12 88157736 88157928 -33099602 + MIRb SINE MIR 18 234 -34 3 1257 181 83 0 53 chr12 88159090 88159128 -33098402 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1257 1388 194 83 16 chr12 88160326 88160640 -33096890 + ORR1C1 LTR MaLR 1 335 -43 3 1257 283 159 0 0 chr12 88160687 88160731 -33096799 + ORR1C1 LTR MaLR 316 359 -8 3 1257 520 183 63 101 chr12 88160723 88160881 -33096649 + B4 SINE B4 72 223 -69 3 1257 1001 65 7 0 chr12 88160746 88160884 -33096646 + B1_Mm SINE Alu 9 147 0 3 1257 899 58 0 0 chr12 88161042 88161163 -33096367 - B1_Mus1 SINE Alu 0 148 28 3 1257 1066 96 42 12 chr12 88161160 88161328 -33096202 - B2_Mm2 SINE B2 -22 173 1 3 1257 401 173 24 161 chr12 88161408 88161532 -33095998 + MT2B LTR ERVL 151 257 -344 3 1257 870 123 7 40 chr12 88161425 88161577 -33095953 + B1_Mus1 SINE Alu 2 148 0 3 1257 1206 55 0 0 chr12 88161596 88161741 -33095789 + B1_Mus1 SINE Alu 4 148 0 3 1257 1202 103 17 11 chr12 88161773 88161950 -33095580 + B2_Mm1t SINE B2 2 179 -14 4 1257 343 125 19 17 chr12 88161981 88162054 -33095476 + B2_Mm2 SINE B2 46 123 -75 4 1257 34 0 0 0 chr12 88162060 88162094 -33095436 + AT_rich Low_complexity Low_complexity 1 34 0 4 1257 455 298 14 34 chr12 88162139 88162285 -33095245 - ID_B1 SINE B4 -1 223 81 4 1257 3200 53 7 15 chr12 88162523 88162926 -33094604 - MTB LTR MaLR 0 400 1 4 1257 227 356 88 35 chr12 88163145 88163206 -33094324 - B4A SINE B4 -5 287 157 4 1257 390 213 34 85 chr12 88163206 88163324 -33094206 - PB1 SINE Alu -2 125 14 4 1257 227 356 88 35 chr12 88163324 88163372 -33094158 - B4A SINE B4 -5 156 49 4 1257 212 86 0 28 chr12 88163587 88163623 -33093907 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 4 1257 1182 81 0 0 chr12 88163624 88163772 -33093758 - B1_Mus1 SINE Alu 0 148 1 4 1257 834 223 109 45 chr12 88163816 88164018 -33093512 - B3 SINE B2 0 216 2 4 1257 864 80 7 21 chr12 88164062 88164202 -33093328 - B1_Mm SINE Alu -1 146 9 4 1257 306 333 137 0 chr12 88164231 88164348 -33093182 + B3A SINE B2 37 169 -29 4 1257 660 261 20 0 chr12 88164413 88164566 -33092964 - ID_B1 SINE B4 -53 171 16 4 1257 432 0 0 0 chr12 88164599 88164647 -33092883 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1257 356 118 0 26 chr12 88164654 88164732 -33092798 + (TCTCTG)n Simple_repeat Simple_repeat 2 77 0 4 1257 435 320 49 24 chr12 88165483 88165688 -33091842 - MIRb SINE MIR -22 246 37 4 1257 377 301 39 7 chr12 88166367 88166521 -33091009 - L2a LINE L2 -52 3374 3216 4 1257 371 286 100 20 chr12 88166537 88166687 -33090843 - MIR3 SINE MIR -5 203 42 4 1257 815 231 56 19 chr12 88166807 88167023 -33090507 - ID_B1 SINE B4 0 224 1 4 1257 234 0 0 0 chr12 88167088 88167114 -33090416 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1257 234 208 12 105 chr12 88168455 88168541 -33088989 - RSINE1 SINE B4 -80 85 8 4 1257 288 274 92 17 chr12 88168611 88168730 -33088800 + L2a LINE L2 3208 3335 -91 4 1257 1346 82 5 54 chr12 88168794 88168999 -33088531 + B2_Mm2 SINE B2 1 195 0 4 1257 717 136 0 78 chr12 88169001 88169129 -33088401 - B1_Mur3 SINE Alu -13 136 19 4 1257 990 227 14 0 chr12 88169134 88169341 -33088189 - B3 SINE B2 -6 210 1 4 1257 29 28 0 0 chr12 88169342 88169378 -33088152 + AT_rich Low_complexity Low_complexity 1 36 0 4 1257 790 66 6 0 chr12 88169379 88169494 -33088036 - B1_Mm SINE Alu 0 120 1 4 1257 567 217 58 107 chr12 88169500 88169706 -33087824 - B3A SINE B2 -1 197 2 4 1257 1263 87 5 27 chr12 88169737 88169910 -33087620 + B2_Mm2 SINE B2 1 170 -25 4 1257 1662 32 0 0 chr12 88169910 88170097 -33087433 - B2_Mm1a SINE B2 -5 188 2 4 1257 1263 87 5 27 chr12 88170097 88170111 -33087419 + B2_Mm2 SINE B2 171 184 -11 4 1257 549 0 0 0 chr12 88170149 88170210 -33087320 + (CTACT)n Simple_repeat Simple_repeat 1 61 0 4 1257 472 198 94 51 chr12 88170225 88170342 -33087188 + B1_Mur1 SINE Alu 27 148 -1 4 1257 503 217 27 36 chr12 88170424 88170534 -33086996 + PB1D7 SINE Alu 12 120 0 4 1257 233 289 0 0 chr12 88170595 88170647 -33086883 + (CCA)n Simple_repeat Simple_repeat 3 54 0 4 1257 492 200 0 0 chr12 88171674 88171754 -33085776 - PB1D7 SINE Alu -5 115 36 4 1257 217 298 54 54 chr12 88171979 88172128 -33085402 - L2a LINE L2 -33 3393 3245 4 1257 888 147 9 16 chr12 88172212 88172365 -33085165 + B3 SINE B2 1 147 -46 4 1257 236 296 102 0 chr12 88172723 88172811 -33084719 - L2a LINE L2 -574 2845 2749 4 1257 232 225 48 64 chr12 88173759 88173837 -33083693 + MIRc SINE MIR 36 112 -156 4 1257 341 292 73 32 chr12 88174237 88174361 -33083169 + MIR3 SINE MIR 28 156 -52 4 1257 210 71 0 0 chr12 88175002 88175030 -33082500 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1257 202 130 0 61 chr12 88175138 88175187 -33082343 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1257 857 177 7 0 chr12 88175197 88175338 -33082192 - B1_Mur3 SINE Alu -2 147 6 4 1257 286 280 44 95 chr12 88175239 88175397 -33082133 - MT2B2 LTR ERVL -326 258 109 4 1257 266 312 25 12 chr12 88175633 88175714 -33081816 + MER112 DNA MER1_type 2 83 -178 4 1257 189 0 0 0 chr12 88175718 88175739 -33081791 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1257 218 207 0 17 chr12 88175739 88175798 -33081732 + GA-rich Low_complexity Low_complexity 4 61 0 4 1257 676 237 8 0 chr12 88175830 88175961 -33081569 - B3A SINE B2 -64 134 3 4 1257 1174 58 0 0 chr12 88175994 88176131 -33081399 - B1_Mus1 SINE Alu -10 138 2 4 1257 260 271 125 0 chr12 88176257 88176353 -33081177 + PB1D10 SINE Alu 1 108 -9 4 1257 575 207 17 33 chr12 88176599 88176719 -33080811 - PB1D9 SINE Alu -2 118 1 4 1257 243 0 0 0 chr12 88176785 88176812 -33080718 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 4 1257 684 162 8 8 chr12 88176812 88176922 -33080608 - B1_Mm SINE Alu -7 140 30 4 1257 22 0 0 0 chr12 88176947 88176969 -33080561 + AT_rich Low_complexity Low_complexity 1 22 0 4 1257 240 35 0 0 chr12 88177141 88177170 -33080360 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1257 271 266 51 41 chr12 88177211 88177309 -33080221 - ID_B1 SINE B4 -1 223 125 4 1257 1137 190 23 23 chr12 88178150 88178366 -33079164 - B3 SINE B2 0 216 1 4 1257 635 217 78 21 chr12 88178474 88178615 -33078915 - B1_Mur2 SINE Alu 0 149 1 4 1257 1003 152 70 42 chr12 88178624 88178837 -33078693 - ID_B1 SINE B4 -4 220 2 4 1257 287 200 67 0 chr12 88178837 88178897 -33078633 - PB1D10 SINE Alu -1 116 53 4 1257 188 272 143 19 chr12 88179238 88179343 -33078187 - L2 LINE L2 -482 2937 2820 4 1257 424 252 79 20 chr12 88180550 88180651 -33076879 - ID_B1 SINE B4 -26 198 92 4 1257 230 29 0 56 chr12 88180682 88180718 -33076812 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4 1257 338 252 97 0 chr12 88180729 88180832 -33076698 + PB1D9 SINE Alu 1 113 -7 4 1257 540 278 195 5 chr12 88180840 88181035 -33076495 + B4A SINE B4 1 232 -60 4 1257 209 217 0 0 chr12 88181338 88181384 -33076146 + T-rich Low_complexity Low_complexity 1 46 0 4 1257 997 57 0 0 chr12 88181928 88182052 -33075478 + B1_Mus2 SINE Alu 14 137 -10 4 1257 744 286 50 23 chr12 88182132 88182144 -33075386 - ID_B1 SINE B4 0 224 213 4 1257 1691 31 0 0 chr12 88182144 88182336 -33075194 - B2_Mm1a SINE B2 0 193 2 4 1257 744 286 50 23 chr12 88182336 88182541 -33074989 - ID_B1 SINE B4 -12 212 1 4 1257 757 162 22 0 chr12 88182762 88182898 -33074632 + B1_Mur3 SINE Alu 10 148 -1 4 1257 272 254 0 16 chr12 88182969 88183033 -33074497 + GA-rich Low_complexity Low_complexity 3 65 0 4 1257 562 206 69 31 chr12 88183126 88183256 -33074274 + RSINE1 SINE B4 3 137 -28 4 1257 184 271 0 0 chr12 88183294 88183342 -33074188 - MIR3 SINE MIR -45 163 116 4 1257 1981 149 30 49 chr12 88183498 88183864 -33073666 + ORR1B2 LTR MaLR 2 360 -7 4 1257 320 348 35 30 chr12 88184166 88184335 -33073195 + MIRb SINE MIR 24 193 -75 4 1257 195 108 0 0 chr12 88184721 88184742 -33072788 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1257 1232 35 14 0 chr12 88184742 88184887 -33072643 - B1_Mus2 SINE Alu 0 147 1 4 1257 195 108 0 0 chr12 88184887 88184902 -33072628 + (T)n Simple_repeat Simple_repeat 1 15 0 4 1257 661 231 0 90 chr12 88184919 88185119 -33072411 - B3A SINE B2 -16 182 1 4 1257 300 219 40 14 chr12 88185209 88185283 -33072247 - ID4_ SINE ID -3 80 5 4 1257 226 238 125 29 chr12 88185286 88185390 -33072140 - Kanga1d DNA Tc2 -46 563 450 4 1257 731 145 23 53 chr12 88185529 88185660 -33071870 + ID_B1 SINE B4 98 224 0 4 1257 210 71 0 0 chr12 88185691 88185719 -33071811 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1257 288 333 42 0 chr12 88185719 88185791 -33071739 - RSINE1 SINE B4 -20 145 71 4 1257 301 219 172 39 chr12 88185852 88185980 -33071550 + B1F SINE Alu 5 149 0 4 1257 959 239 38 110 chr12 88186153 88186306 -33071224 + ORR1D1 LTR MaLR 1 150 -224 4 1257 1537 48 37 0 chr12 88186306 88186493 -33071037 + B2_Mm2 SINE B2 1 194 -1 4 1257 959 239 38 110 chr12 88186493 88186711 -33070819 + ORR1D1 LTR MaLR 151 345 -29 4 1257 1623 36 0 20 chr12 88187152 88187348 -33070182 - B2_Mm1a SINE B2 0 193 2 4 1257 737 217 0 0 chr12 88187510 88187639 -33069891 - B1_Mur1 SINE Alu -11 138 10 4 1257 860 94 156 0 chr12 88187773 88187901 -33069629 + B1_Mus1 SINE Alu 1 148 0 4 1257 321 89 0 0 chr12 88187901 88187946 -33069584 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1257 336 315 69 7 chr12 88188087 88188231 -33069299 + RMER15 LTR ERVL 422 574 -1 4 1257 949 322 39 46 chr12 88188505 88189028 -33068502 + L1MC4 LINE L1 7385 7907 -135 4 1257 378 0 0 0 chr12 88189028 88189070 -33068460 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1257 949 322 39 46 chr12 88189070 88189089 -33068441 + L1MC4 LINE L1 7908 7923 -119 4 1257 325 324 114 7 chr12 88189115 88189255 -33068275 - MER63B DNA AcHobo -2 434 280 4 1257 198 167 0 0 chr12 88189402 88189438 -33068092 + T-rich Low_complexity Low_complexity 1 36 0 4 1257 287 266 38 12 chr12 88189442 88189522 -33068008 - B3 SINE B2 0 216 135 4 1257 215 122 20 0 chr12 88189522 88189571 -33067959 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 4 1257 915 134 14 27 chr12 88189575 88189721 -33067809 - B1_Mur1 SINE Alu -4 145 2 4 1257 582 252 22 29 chr12 88189722 88189861 -33067669 - B3 SINE B2 -76 140 3 4 1257 207 266 0 0 chr12 88189865 88189929 -33067601 + CT-rich Low_complexity Low_complexity 1 64 0 4 1257 665 271 127 0 chr12 88189932 88190113 -33067417 - ID_B1 SINE B4 -19 205 2 4 1257 756 260 9 52 chr12 88192555 88192766 -33064764 + B3 SINE B2 2 203 -13 5 1257 395 125 0 14 chr12 88192766 88192839 -33064691 + (CATA)n Simple_repeat Simple_repeat 3 74 0 5 1257 191 32 65 0 chr12 88193118 88193149 -33064381 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5 1257 654 193 22 22 chr12 88193595 88193733 -33063797 - B1_Mur1 SINE Alu -7 142 5 5 1257 656 249 164 0 chr12 88193756 88193933 -33063597 - ID_B1 SINE B4 -16 208 3 5 1257 659 330 27 46 chr12 88193956 88194085 -33063445 - L1MC1 LINE L1 -21 6312 6195 5 1257 1088 55 0 0 chr12 88194085 88194213 -33063317 - B1_Mus1 SINE Alu -19 129 2 5 1257 659 330 27 46 chr12 88194213 88194449 -33063081 - L1MC1 LINE L1 -139 6194 5954 5 1257 353 250 8 8 chr12 88194449 88194566 -33062964 + (TG)n Simple_repeat Simple_repeat 1 117 0 5 1257 556 236 86 80 chr12 88194583 88194758 -33062772 - B4A SINE B4 -1 291 116 5 1257 1347 208 40 0 chr12 88194758 88195056 -33062474 - L1MC1 LINE L1 -359 5974 5665 5 1257 533 266 44 16 chr12 88195058 88195219 -33062311 - ID_B1 SINE B4 -63 229 67 5 1257 271 167 0 0 chr12 88195220 88195268 -33062262 - L1MC1 LINE L1 -686 5647 5600 5 1257 1031 129 0 26 chr12 88195300 88195451 -33062079 - B1_Mur3 SINE Alu -2 147 1 5 1257 334 206 170 38 chr12 88195454 88195560 -33061970 - ID_B1 SINE B4 -1 223 104 5 1257 389 124 69 40 chr12 88195566 88195667 -33061863 - L1MC1 LINE L1 -854 5292 5189 5 1257 190 350 24 79 chr12 88195827 88195954 -33061576 - L2 LINE L2 -478 2941 2822 5 1257 860 162 14 7 chr12 88195987 88196130 -33061400 - B1_Mur3 SINE Alu 0 149 6 5 1257 454 57 0 28 chr12 88197068 88197140 -33060390 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1257 572 319 74 82 chr12 88197168 88197438 -33060092 - B4A SINE B4 -11 281 14 5 1257 1067 43 0 74 chr12 88197517 88197666 -33059864 + B1_Mm SINE Alu 1 138 -9 5 1257 303 28 0 0 chr12 88197666 88197702 -33059828 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1257 249 342 0 0 chr12 88197977 88198050 -33059480 - ID4_ SINE ID -6 77 5 5 1257 284 237 12 95 chr12 88198895 88198979 -33058551 - B4A SINE B4 0 292 216 5 1257 207 0 0 0 chr12 88198998 88199021 -33058509 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1257 1239 55 0 0 chr12 88199021 88199166 -33058364 - B1_Mus2 SINE Alu -2 145 1 5 1257 1153 192 14 19 chr12 88199171 88199383 -33058147 - B3 SINE B2 -3 213 3 5 1257 430 156 13 0 chr12 88199414 88199491 -33058039 - B1_Mus2 SINE Alu 0 147 70 5 1257 651 146 64 0 chr12 88199718 88199828 -33057702 - B1_Mus1 SINE Alu -2 146 30 5 1257 204 97 0 0 chr12 88201152 88201183 -33056347 + (TCTG)n Simple_repeat Simple_repeat 3 33 0 5 1257 216 67 0 0 chr12 88201186 88201216 -33056314 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1257 704 174 0 32 chr12 88201982 88202107 -33055423 - B1_Mur3 SINE Alu -13 136 16 5 1257 491 259 12 61 chr12 88202106 88202226 -33055304 + B1_Mur2 SINE Alu 5 117 -32 5 1257 333 68 0 0 chr12 88202226 88202270 -33055260 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1257 463 261 101 65 chr12 88202270 88202288 -33055242 + B1_Mus1 SINE Alu 117 147 -1 5 1257 1278 89 56 0 chr12 88202354 88202533 -33054997 - B2_Mm2 SINE B2 -5 190 2 5 1257 238 175 0 0 chr12 88203306 88203346 -33054184 + B2_Mm2 SINE B2 2 41 -154 5 1257 1550 38 33 0 chr12 88203346 88203529 -33054001 + B2_Mm1a SINE B2 2 190 -3 5 1257 28 0 0 0 chr12 88203539 88203567 -33053963 + AT_rich Low_complexity Low_complexity 1 28 0 5 1257 1060 112 44 0 chr12 88203567 88203727 -33053803 + B2_Mm2 SINE B2 27 193 -2 5 1257 489 248 60 37 chr12 88203731 88203865 -33053665 + B1F SINE Alu 13 149 0 5 1257 341 268 0 0 chr12 88203868 88203950 -33053580 + ID2 SINE ID 2 83 0 5 1257 2322 98 3 61 chr12 88204035 88204381 -33053149 + ORR1A3 LTR MaLR 1 326 0 5 1257 1102 112 6 6 chr12 88205900 88206079 -33051451 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 1257 923 43 8 0 chr12 88206080 88206197 -33051333 - B1_Mm SINE Alu 0 147 30 5 1257 319 260 206 38 chr12 88206215 88206399 -33051131 - B3 SINE B2 -1 215 1 5 1257 225 0 0 0 chr12 88206402 88206427 -33051103 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1257 895 287 61 6 chr12 88206427 88206648 -33050882 - ID_B1 SINE B4 -46 246 15 5 1257 240 278 0 25 chr12 88206718 88206737 -33050793 + ORR1B1-int LTR MaLR 632 647 -862 5 1257 806 163 31 8 chr12 88206737 88206867 -33050663 + B1_Mus2 SINE Alu 2 134 -13 5 1257 450 0 0 0 chr12 88206867 88206917 -33050613 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1257 185 315 169 0 chr12 88206982 88207112 -33050418 - MIRb SINE MIR -59 209 58 5 1257 988 207 50 0 chr12 88207664 88207862 -33049668 + B3 SINE B2 1 208 -8 5 1257 1249 34 0 7 chr12 88207868 88208016 -33049514 + B1_Mus2 SINE Alu 1 147 0 5 1257 231 149 0 60 chr12 88208691 88208741 -33048789 - B1_Mus2 SINE Alu -2 145 99 5 1257 227 286 107 102 chr12 88208712 88208918 -33048612 - MamGypLTR1a LTR Gypsy -518 266 60 5 1257 32 0 0 0 chr12 88209260 88209292 -33048238 + AT_rich Low_complexity Low_complexity 1 32 0 5 1257 1156 95 0 0 chr12 88209302 88209449 -33048081 - B1_Mus2 SINE Alu 0 147 1 5 1257 777 191 30 84 chr12 88209453 88209687 -33047843 - B3A SINE B2 0 216 1 5 1257 282 95 0 0 chr12 88209881 88209923 -33047607 + (GGGGA)n Simple_repeat Simple_repeat 3 44 0 5 1257 533 279 132 11 chr12 88209927 88210122 -33047408 + ID_B1 SINE B4 1 216 -76 5 1257 901 142 8 0 chr12 88210177 88210311 -33047219 + B1_Mur4 SINE Alu 16 150 0 5 1257 543 206 128 15 chr12 88210329 88210462 -33047068 + B1F SINE Alu 2 149 0 5 1257 324 64 0 0 chr12 88210541 88210588 -33046942 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 1257 1248 61 0 0 chr12 88210591 88210738 -33046792 + B1_Mus1 SINE Alu 2 148 0 5 1257 312 27 0 0 chr12 88211209 88211246 -33046284 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1257 496 114 121 33 chr12 88211246 88211337 -33046193 - PB1D9 SINE Alu -11 109 11 5 1257 315 186 0 0 chr12 88211360 88211410 -33046120 + T-rich Low_complexity Low_complexity 21 70 0 5 157 1272 48 0 0 chr12 88211410 88211557 -33045973 - B1_Mus2 SINE Alu 0 147 1 5 1258 315 186 0 0 chr12 88211557 88211576 -33045954 + T-rich Low_complexity Low_complexity 2 20 0 5 1258 216 0 0 0 chr12 88211608 88211632 -33045898 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 5 1258 262 70 68 23 chr12 88211649 88211693 -33045837 - B2_Mm2 SINE B2 -103 92 47 5 1258 1286 122 0 0 chr12 88211744 88211924 -33045606 - B2_Mm2 SINE B2 -14 181 2 5 1258 656 242 0 30 chr12 88211926 88212058 -33045472 - B1_Mus2 SINE Alu -14 133 6 5 1258 212 300 17 0 chr12 88212005 88212065 -33045465 - B4A SINE B4 -149 143 83 5 1258 1039 208 29 5 chr12 88212070 88212278 -33045252 - B3 SINE B2 0 216 4 5 1258 435 19 0 0 chr12 88212318 88212370 -33045160 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1258 211 295 226 12 chr12 88212465 88212577 -33044953 - MIRb SINE MIR -96 180 48 5 1258 564 274 44 15 chr12 88213900 88214037 -33043493 - ID_B1 SINE B4 0 224 84 5 1258 22 0 0 0 chr12 88214046 88214068 -33043462 + AT_rich Low_complexity Low_complexity 1 22 0 5 1258 1146 66 0 0 chr12 88214141 88214278 -33043252 + B1_Mus1 SINE Alu 2 138 -10 5 1258 262 0 26 26 chr12 88214278 88214317 -33043213 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1258 354 246 16 22 chr12 88214397 88214499 -33043031 - ID2 SINE ID -37 115 8 5 1258 1224 68 0 0 chr12 88214747 88214894 -33042636 + B1_Mm SINE Alu 1 147 0 5 1258 249 98 0 0 chr12 88215200 88215241 -33042289 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 5 1258 775 137 17 0 chr12 88215268 88215385 -33042145 - B1_Mur4 SINE Alu -6 144 26 5 1258 819 249 57 0 chr12 88215530 88215707 -33041823 - B3 SINE B2 -21 195 9 5 1258 757 174 51 0 chr12 88215735 88215873 -33041657 + B1_Mus1 SINE Alu 1 145 -3 5 1258 244 313 108 58 chr12 88216024 88216039 -33041491 - B4 SINE B4 -63 229 211 5 1258 516 317 92 10 chr12 88216039 88216246 -33041284 - ID_B1 SINE B4 0 224 1 5 1258 538 255 66 1 chr12 88216246 88216370 -33041160 - ID_B1 SINE B4 -82 210 79 5 1258 932 107 43 0 chr12 88217692 88217832 -33039698 - B1_Mus1 SINE Alu 0 148 3 5 1258 522 223 89 24 chr12 88218039 88218163 -33039367 + B1_Mur1 SINE Alu 2 133 -16 5 1258 678 157 0 125 chr12 88218185 88218345 -33039185 + B1_Mur2 SINE Alu 5 144 -5 5 1258 324 48 0 0 chr12 88218685 88218727 -33038803 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1258 1183 44 0 0 chr12 88218727 88218863 -33038667 - B1_Mus1 SINE Alu -12 136 1 5 1258 438 266 20 48 chr12 88221052 88221198 -33036332 - ORR1D2 LTR MaLR -56 314 173 5 1258 261 0 0 0 chr12 88221365 88221394 -33036136 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1258 185 61 0 83 chr12 88221948 88221984 -33035546 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1258 201 154 0 0 chr12 88222053 88222092 -33035438 + T-rich Low_complexity Low_complexity 1 39 0 5 1258 341 123 15 0 chr12 88224522 88224587 -33032943 + (CTG)n Simple_repeat Simple_repeat 2 67 0 5 1258 203 250 0 0 chr12 88225912 88225956 -33031574 + C-rich Low_complexity Low_complexity 4 47 0 5 1258 241 312 70 44 chr12 88227417 88227531 -33029999 + MamRep488 DNA hAT 103 219 0 5 1258 342 0 0 0 chr12 88228268 88228306 -33029224 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1258 288 0 0 0 chr12 88228717 88228749 -33028781 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1258 1054 68 0 20 chr12 88228764 88228913 -33028617 - B1_Mm SINE Alu 0 147 2 5 1258 216 0 0 0 chr12 88229719 88229743 -33027787 + (CGGG)n Simple_repeat Simple_repeat 2 25 0 6 1258 225 0 0 0 chr12 88229949 88229974 -33027556 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1258 234 268 68 49 chr12 88230663 88230796 -33026734 - MIRb SINE MIR -2 266 115 6 1258 246 281 11 58 chr12 88231179 88231266 -33026264 + ID4 SINE ID 1 83 0 6 1258 227 311 16 107 chr12 88231576 88231603 -33025927 - ID_B1 SINE B4 0 224 160 6 1258 236 313 59 34 chr12 88231603 88231722 -33025808 - B1F SINE Alu -27 122 1 6 1258 227 311 16 107 chr12 88231722 88231763 -33025767 - ID_B1 SINE B4 0 159 55 6 1258 486 0 0 0 chr12 88232265 88232319 -33025211 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1258 251 213 0 0 chr12 88232434 88232495 -33025035 + A-rich Low_complexity Low_complexity 1 61 0 6 1258 218 302 0 0 chr12 88233690 88233753 -33023777 + C-rich Low_complexity Low_complexity 5 67 0 6 1258 207 0 0 0 chr12 88233819 88233842 -33023688 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1258 204 40 0 0 chr12 88233842 88233866 -33023664 + (CG)n Simple_repeat Simple_repeat 2 26 0 6 1258 210 174 0 0 chr12 88235362 88235408 -33022122 + G-rich Low_complexity Low_complexity 1 46 0 6 1258 246 32 0 0 chr12 88235713 88235744 -33021786 + (CCCG)n Simple_repeat Simple_repeat 2 32 0 6 1258 21 0 0 0 chr12 88236911 88236932 -33020598 + GC_rich Low_complexity Low_complexity 1 21 0 6 1258 204 125 0 0 chr12 88237409 88237441 -33020089 + (C)n Simple_repeat Simple_repeat 1 32 0 6 1258 234 0 0 0 chr12 88238166 88238192 -33019338 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1258 316 280 23 78 chr12 88239354 88239374 -33018156 - RMER15 LTR ERVL -93 482 462 6 1258 243 0 0 0 chr12 88239374 88239401 -33018129 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1258 316 280 23 78 chr12 88239401 88239508 -33018022 - RMER15 LTR ERVL -114 461 362 6 1258 320 227 67 0 chr12 88239722 88239797 -33017733 - ID2 SINE ID -3 80 1 6 1258 289 315 126 0 chr12 88239861 88239972 -33017558 + B3A SINE B2 47 171 -27 6 1258 378 0 0 0 chr12 88239981 88240023 -33017507 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1258 1100 72 0 0 chr12 88240039 88240177 -33017353 + B1_Mus2 SINE Alu 1 138 -9 6 1258 28 0 0 0 chr12 88241060 88241088 -33016442 + AT_rich Low_complexity Low_complexity 1 28 0 6 1258 653 75 0 0 chr12 88241559 88241653 -33015877 - B1_Mur4 SINE Alu -16 134 41 6 1258 311 320 31 23 chr12 88241653 88241781 -33015749 - MIR SINE MIR -87 175 47 6 1258 188 172 0 0 chr12 88241791 88241820 -33015710 + MIRb SINE MIR 46 74 -194 6 1258 1046 63 0 0 chr12 88242367 88242510 -33015020 - B1_Mus1 SINE Alu 0 148 6 6 1258 3637 40 0 0 chr12 88242547 88242998 -33014532 - L1Md_F2 LINE L1 0 6582 6132 6 1258 290 289 64 45 chr12 88243000 88243156 -33014374 + L2c LINE L2 2968 3126 -261 6 1258 903 124 0 0 chr12 88243364 88243509 -33014021 + (TTTTC)n Simple_repeat Simple_repeat 3 147 0 6 1258 620 219 31 15 chr12 88243520 88243650 -33013880 - B1_Mur2 SINE Alu -11 138 7 6 1258 251 297 28 105 chr12 88243552 88243695 -33013835 - MT2B LTR ERVL -345 256 125 6 1258 275 259 86 0 chr12 88243680 88243761 -33013769 - ID_B1 SINE B4 -16 208 121 6 1258 306 0 0 0 chr12 88243761 88243795 -33013735 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1258 1377 47 14 7 chr12 88243795 88244072 -33013458 + (TTCC)n Simple_repeat Simple_repeat 1 279 0 6 1258 612 103 0 0 chr12 88244075 88244162 -33013368 - B1_Mus2 SINE Alu -59 88 2 6 1258 301 293 0 13 chr12 88244164 88244254 -33013276 - ID_B1 SINE B4 -70 154 70 6 1258 499 215 391 20 chr12 88244535 88244708 -33012822 + MTEb LTR MaLR 5 270 -109 6 1258 546 234 106 7 chr12 88244713 88244855 -33012675 + ID_B1 SINE B4 65 220 -4 6 1258 514 262 174 8 chr12 88244903 88245168 -33012362 - RMER10A LTR ERVL -13 429 121 6 1258 669 275 20 20 chr12 88247782 88247979 -33009551 - B3A SINE B2 -1 197 1 6 1258 704 276 0 18 chr12 88248150 88248316 -33009214 + RSINE1 SINE B4 3 165 0 6 1258 329 244 192 88 chr12 88248481 88248674 -33008856 + ID_B1 SINE B4 1 213 -11 6 1258 1679 169 79 33 chr12 88248683 88248978 -33008552 - MTC LTR MaLR -15 406 105 6 1258 1398 78 16 0 chr12 88248978 88249169 -33008361 + B2_Mm2 SINE B2 2 195 0 6 1258 1679 169 79 33 chr12 88249169 88249240 -33008290 - MTC LTR MaLR -317 104 23 6 1258 1066 89 7 0 chr12 88249244 88249390 -33008140 + B1_Mus2 SINE Alu 1 147 0 6 1258 310 317 39 19 chr12 88249407 88249510 -33008020 + L1M4b LINE L1 1761 1865 -5469 6 1258 243 194 16 16 chr12 88249515 88249578 -33007952 - MLT1H1 LTR MaLR -67 488 426 6 1258 280 0 0 48 chr12 88250371 88250413 -33007117 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6 1258 251 340 41 20 chr12 88250493 88250640 -33006890 - RMER15 LTR ERVL -16 559 410 6 1258 1276 172 6 48 chr12 88250824 88251136 -33006394 - RMER17C LTR ERVK 0 410 112 6 1258 595 189 27 19 chr12 88251134 88251341 -33006189 - ORR1B2 LTR MaLR -102 265 1 6 1258 250 250 71 0 chr12 88251341 88251397 -33006133 - B4A SINE B4 -145 147 88 6 1258 264 59 0 0 chr12 88251419 88251453 -33006077 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1258 291 276 38 16 chr12 88251535 88251635 -33005895 - B4A SINE B4 -137 155 55 6 1258 960 162 0 0 chr12 88251667 88251678 -33005852 + polypyrimidine Low_complexity Low_complexity 170 180 0 6 1258 222 37 0 0 chr12 88251678 88251705 -33005825 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 6 1258 960 162 0 0 chr12 88251705 88251872 -33005658 + CT-rich Low_complexity Low_complexity 3 169 0 6 1258 885 109 66 0 chr12 88251872 88252009 -33005521 - B1_Mus1 SINE Alu 0 148 3 6 1258 882 177 0 0 chr12 88252014 88252161 -33005369 - B1_Mus2 SINE Alu 0 147 1 6 1258 1521 31 16 5 chr12 88254077 88254269 -33003261 + B2_Mm2 SINE B2 2 195 0 6 1258 420 318 87 21 chr12 88254366 88254607 -33002923 - MIR SINE MIR 0 268 12 6 1258 186 133 0 0 chr12 88254929 88254959 -33002571 + (CCG)n Simple_repeat Simple_repeat 2 31 0 6 1258 315 277 43 0 chr12 88254997 88255091 -33002439 + PB1D10 SINE Alu 6 103 -14 6 1258 288 0 0 0 chr12 88256177 88256209 -33001321 + (TTA)n Simple_repeat Simple_repeat 1 32 0 6 1258 360 241 84 131 chr12 88256209 88256400 -33001130 - ID_B1 SINE B4 -16 208 27 6 1258 3538 61 12 18 chr12 88257597 88258097 -32999433 - LTRIS2 LTR ERV1 -67 497 1 6 1258 435 254 8 16 chr12 88258891 88259014 -32998516 + PB1D7 SINE Alu 13 128 -21 6 1258 513 0 0 0 chr12 88260791 88260848 -32996682 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1258 839 255 14 14 chr12 88261084 88261299 -32996231 + ID_B1 SINE B4 4 218 -6 6 1258 701 233 30 108 chr12 88261310 88261484 -32996046 - B3 SINE B2 -3 213 47 6 1258 858 114 76 0 chr12 88261484 88261616 -32995914 + B1_Mus2 SINE Alu 5 146 -1 6 1258 701 233 30 108 chr12 88261616 88261672 -32995858 - B3 SINE B2 -170 46 1 6 1258 287 236 150 0 chr12 88261711 88261789 -32995741 - AluF_3 SINE Alu -99 212 137 6 1258 360 0 0 0 chr12 88261860 88261900 -32995630 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1258 759 160 20 34 chr12 88261909 88262058 -32995472 - B1_Mur3 SINE Alu 0 149 3 6 1258 720 198 117 51 chr12 88262100 88262297 -32995233 + B3 SINE B2 2 211 -5 6 1258 1115 37 0 0 chr12 88262303 88262439 -32995091 + B1_Mm SINE Alu 2 137 -10 6 1258 323 23 23 0 chr12 88262439 88262483 -32995047 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1258 498 319 71 14 chr12 88262508 88262718 -32994812 + B4A SINE B4 3 224 -68 6 1258 930 116 7 33 chr12 88262736 88262888 -32994642 + B1_Mur4 SINE Alu 2 149 -1 6 1258 208 157 0 56 chr12 88262888 88262942 -32994588 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 6 1258 375 159 16 0 chr12 88263033 88263096 -32994434 - ID4_ SINE ID -6 77 14 6 1258 340 179 23 93 chr12 88263096 88263117 -32994413 - ID SINE ID -144 78 1 6 1258 405 0 0 0 chr12 88263131 88263176 -32994354 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1258 456 19 0 0 chr12 88263176 88263228 -32994302 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1258 321 159 0 0 chr12 88263659 88263722 -32993808 + CT-rich Low_complexity Low_complexity 4 66 0 6 1258 1108 63 0 7 chr12 88264113 88264257 -32993273 - B1_Mus1 SINE Alu -1 147 5 6 1258 287 287 137 16 chr12 88265280 88265404 -32992126 - MIRb SINE MIR -5 257 119 6 1258 424 272 0 17 chr12 88265469 88265585 -32991945 - PB1D10 SINE Alu -1 116 3 6 1258 195 42 0 0 chr12 88265600 88265624 -32991906 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 6 1258 765 232 19 0 chr12 88265684 88265839 -32991691 - B3 SINE B2 -11 205 48 6 1258 222 118 0 0 chr12 88265873 88265907 -32991623 + (TCC)n Simple_repeat Simple_repeat 3 36 0 6 1258 372 250 0 33 chr12 88265913 88266004 -32991526 - ID_B1 SINE B4 0 224 137 6 1258 1176 111 16 27 chr12 88266000 88266172 -32991358 - B2_Mm2 SINE B2 -8 187 17 6 1258 2853 71 159 46 chr12 88266172 88266632 -32990898 + RLTR1B LTR ERV1 1 512 0 6 1258 1176 111 16 27 chr12 88266632 88266645 -32990885 - B2_Mm2 SINE B2 -179 16 4 6 1258 886 161 0 7 chr12 88266750 88266894 -32990636 - B1_Mus1 SINE Alu -5 143 1 6 1258 301 194 132 15 chr12 88266904 88266972 -32990558 - ID SINE ID -141 83 8 6 1258 227 218 118 65 chr12 88267033 88267126 -32990404 - ID_B1 SINE B4 -2 222 125 6 1258 283 246 31 0 chr12 88267168 88267233 -32990297 - ID4_ SINE ID -16 67 1 6 1258 258 268 56 0 chr12 88267387 88267458 -32990072 - B1_Mur1 SINE Alu -9 140 66 6 1258 759 22 0 0 chr12 88267464 88267553 -32989977 + (TTTTC)n Simple_repeat Simple_repeat 2 90 0 6 1258 255 79 0 0 chr12 88267700 88267738 -32989792 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1258 1047 259 88 56 chr12 88268177 88268607 -32988923 + RMER13A LTR ERVK 21 464 -396 7 1258 235 293 177 53 chr12 88268645 88268854 -32988676 + RMER13A LTR ERVK 589 823 -37 7 1258 790 202 103 5 chr12 88269442 88269626 -32987904 + B3 SINE B2 1 202 -14 7 1258 825 187 0 0 chr12 88269649 88269728 -32987802 + polypyrimidine Low_complexity Low_complexity 88 166 0 7 1258 1298 73 6 0 chr12 88269728 88269907 -32987623 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1258 825 187 0 0 chr12 88269907 88269993 -32987537 + polypyrimidine Low_complexity Low_complexity 2 87 0 7 1258 666 231 20 34 chr12 88270014 88270162 -32987368 + B1_Mur3 SINE Alu 3 148 -1 7 1258 771 224 33 80 chr12 88270315 88270435 -32987095 + B3 SINE B2 1 121 -95 7 1258 450 65 0 0 chr12 88270435 88270497 -32987033 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1258 771 224 33 80 chr12 88270497 88270589 -32986941 + B3 SINE B2 122 203 -13 7 1258 254 298 147 17 chr12 88270638 88270754 -32986776 - ORR1E LTR MaLR -214 145 15 7 1258 490 303 90 0 chr12 88270900 88271045 -32986485 + B4 SINE B4 7 164 -128 7 1258 492 260 139 25 chr12 88271081 88271282 -32986248 + B4 SINE B4 1 224 -68 7 1258 1019 62 98 18 chr12 88271287 88271445 -32986085 + B2_Mm2 SINE B2 2 173 -22 7 1258 180 77 0 0 chr12 88271445 88271471 -32986059 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 7 1258 213 328 0 0 chr12 88271525 88271589 -32985941 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1258 380 288 23 23 chr12 88271612 88271740 -32985790 + RSINE1 SINE B4 38 165 0 7 1258 501 158 148 0 chr12 88271778 88271879 -32985651 + B1_Mur1 SINE Alu 34 149 0 7 1258 1249 190 143 16 chr12 88271936 88272257 -32985273 + ORR1D1 LTR MaLR 1 362 -12 7 1258 318 148 0 0 chr12 88272710 88272764 -32984766 + (TCC)n Simple_repeat Simple_repeat 2 55 0 7 1258 714 288 33 9 chr12 88273669 88273879 -32983651 + ID_B1 SINE B4 8 222 -2 7 1258 541 224 245 37 chr12 88273914 88274155 -32983375 + B4 SINE B4 2 292 0 7 1258 688 304 75 24 chr12 88274713 88275006 -32982524 + MLT1A0 LTR MaLR 6 313 -52 7 1258 1190 61 0 0 chr12 88275030 88275178 -32982352 - B1_Mus1 SINE Alu 0 148 1 7 1258 866 125 0 71 chr12 88275183 88275338 -32982192 - B1_Mus1 SINE Alu 0 148 5 7 1258 303 182 14 43 chr12 88275342 88275411 -32982119 + MLT1A0 LTR MaLR 297 363 -2 7 1258 468 295 60 0 chr12 88275424 88275573 -32981957 - MER20 DNA MER1_type -27 192 35 7 1258 256 336 207 0 chr12 88275759 88275875 -32981655 + ID_B1 SINE B4 84 223 -1 7 1258 423 0 0 0 chr12 88275911 88275958 -32981572 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1258 364 162 263 2 chr12 88276138 88276234 -32981296 + B1_Mus1 SINE Alu 5 110 -38 7 1258 998 205 10 24 chr12 88276570 88276775 -32980755 - B3 SINE B2 -14 202 1 7 1258 180 0 0 0 chr12 88276996 88277016 -32980514 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1258 383 266 88 134 chr12 88277204 88277418 -32980112 - FordPrefect DNA Tip100 -3 1680 1489 7 1258 795 21 0 0 chr12 88277418 88277511 -32980019 + (TTC)n Simple_repeat Simple_repeat 3 95 0 7 1258 383 266 88 134 chr12 88277511 88277535 -32979995 - FordPrefect DNA Tip100 -195 1488 1453 7 1258 382 323 112 55 chr12 88277582 88277893 -32979637 - Zaphod DNA Tip100 -2050 1981 1653 7 1258 340 335 92 31 chr12 88278335 88278498 -32979032 + ID_B1 SINE B4 2 174 -50 7 1258 190 77 51 0 chr12 88278726 88278746 -32978784 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 1258 243 0 0 0 chr12 88278746 88278773 -32978757 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1258 190 77 51 0 chr12 88278773 88278791 -32978739 + (TA)n Simple_repeat Simple_repeat 2 19 0 7 1258 1061 72 43 0 chr12 88278791 88278929 -32978601 - B1_Mus2 SINE Alu -2 145 2 7 1258 396 351 62 14 chr12 88279097 88279305 -32978225 + Kanga1a DNA Tc2 274 491 -263 7 1258 415 195 26 13 chr12 88279301 88279379 -32978151 - B3A SINE B2 -119 79 1 7 1258 189 0 0 0 chr12 88279431 88279452 -32978078 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1258 278 294 0 0 chr12 88279461 88279529 -32978001 - RSINE1 SINE B4 -12 153 86 7 1258 289 231 0 0 chr12 88279594 88279653 -32977877 - B1_Mus2 SINE Alu -90 59 1 7 1258 759 227 62 76 chr12 88280141 88280351 -32977179 - ID_B1 SINE B4 -17 207 1 7 1258 251 229 49 0 chr12 88280394 88280405 -32977125 - PB1D10 SINE Alu -2 115 82 7 1258 263 186 0 0 chr12 88280405 88280448 -32977082 - ID_B1 SINE B4 -13 211 169 7 1258 1110 50 0 21 chr12 88280478 88280620 -32976910 - B1_Mm SINE Alu 0 147 9 7 1258 920 219 28 6 chr12 88280624 88280803 -32976727 - B3 SINE B2 0 216 34 7 1258 375 188 8 17 chr12 88280807 88280926 -32976604 + GA-rich Low_complexity Low_complexity 6 123 0 7 1258 237 33 0 0 chr12 88280996 88281026 -32976504 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1258 397 206 196 0 chr12 88281026 88281118 -32976412 - PB1D9 SINE Alu -9 111 2 7 1258 905 170 7 0 chr12 88281139 88281286 -32976244 + B1_Mur3 SINE Alu 2 149 0 7 1258 680 237 23 23 chr12 88281307 88281484 -32976046 + B3A SINE B2 6 182 -16 7 1258 25 51 0 0 chr12 88281525 88281564 -32975966 + AT_rich Low_complexity Low_complexity 1 39 0 7 1258 22 56 0 0 chr12 88281936 88281972 -32975558 + AT_rich Low_complexity Low_complexity 1 36 0 7 1258 514 192 3 24 chr12 88283958 88284087 -32973443 - B3 SINE B2 -72 123 2 7 1258 393 22 0 0 chr12 88284190 88284236 -32973294 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1258 237 296 0 0 chr12 88284237 88284291 -32973239 - ID_B1 SINE B4 -16 208 155 7 1258 331 296 86 9 chr12 88284757 88284856 -32972674 + Charlie18a DNA MER1_type 4 112 -230 7 1258 897 153 14 0 chr12 88284856 88285000 -32972530 - B1_Mm SINE Alu -1 146 1 7 1258 331 296 86 9 chr12 88285000 88285016 -32972514 + Charlie18a DNA MER1_type 113 128 -214 7 1258 1022 58 45 0 chr12 88285161 88285306 -32972224 + B2_Mm2 SINE B2 2 171 -22 7 1258 186 71 0 0 chr12 88285306 88285334 -32972196 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 7 1258 842 136 161 0 chr12 88285334 88285350 -32972180 + B2_Mm1t SINE B2 172 188 -5 7 1258 801 125 81 0 chr12 88285361 88285497 -32972033 + B1_Mus1 SINE Alu 2 148 0 7 1258 829 134 7 7 chr12 88285545 88285695 -32971835 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 7 1258 261 231 31 0 chr12 88285701 88285766 -32971764 - ID4 SINE ID -16 67 1 7 1258 368 286 12 0 chr12 88285777 88285861 -32971669 - PB1 SINE Alu -40 87 3 7 1258 584 259 7 35 chr12 88285905 88286049 -32971481 + B1F2 SINE Alu 10 149 0 7 1258 394 304 73 7 chr12 88287365 88287501 -32970029 + MER3 DNA MER1_type 8 152 -57 7 1258 913 180 138 5 chr12 88290307 88290502 -32967028 - URR1B DNA MER1_type -4 221 1 7 1258 736 164 78 0 chr12 88292003 88292131 -32965399 - B1_Mur1 SINE Alu -7 142 5 7 1258 497 242 3 5 chr12 88292141 88292248 -32965282 - B3 SINE B2 -92 106 2 7 1258 331 159 14 0 chr12 88292291 88292360 -32965170 - Lx4A LINE L1 0 7058 6989 7 1258 378 215 37 37 chr12 88292407 88292489 -32965041 - ID SINE ID -141 83 2 7 1258 198 0 0 0 chr12 88292519 88292541 -32964989 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7 1258 217 208 132 0 chr12 88292569 88292622 -32964908 + B2_Mm2 SINE B2 3 62 -133 7 1258 251 160 0 0 chr12 88292633 88292683 -32964847 + B3 SINE B2 167 216 0 7 1258 1389 61 66 0 chr12 88292703 88292884 -32964646 + B2_Mm1t SINE B2 1 193 0 7 1258 530 256 168 0 chr12 88292912 88293049 -32964481 + RSINE1 SINE B4 2 161 -4 7 1258 300 159 0 0 chr12 88293109 88293153 -32964377 - HAL1-3A_ME LINE L1 -840 2018 1975 7 1258 440 126 11 0 chr12 88293153 88293240 -32964290 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 1258 294 29 0 0 chr12 88294070 88294105 -32963425 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 7 1258 888 221 25 120 chr12 88294219 88294378 -32963152 + ID_B1 SINE B4 2 150 -74 7 1258 1192 99 4 147 chr12 88294378 88294562 -32962968 - B2_Mm1t SINE B2 0 193 35 7 1258 1256 41 0 0 chr12 88294562 88294709 -32962821 - B1_Mus2 SINE Alu 0 147 1 7 1258 1192 99 4 147 chr12 88294709 88294749 -32962781 - B2_Mm1t SINE B2 -159 34 1 7 1258 888 221 25 120 chr12 88294749 88294831 -32962699 + ID_B1 SINE B4 151 220 -4 7 1258 750 293 6 6 chr12 88295272 88295454 -32962076 + B3A SINE B2 1 182 -16 7 1258 252 0 0 0 chr12 88295468 88295496 -32962034 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1258 871 172 14 7 chr12 88295518 88295664 -32961866 + B1_Mur2 SINE Alu 1 147 -2 7 1258 984 86 43 0 chr12 88295714 88295876 -32961654 + (TTTTC)n Simple_repeat Simple_repeat 2 170 0 7 1258 1325 85 11 6 chr12 88295877 88296055 -32961475 - B2_Mm2 SINE B2 -15 180 2 7 1258 26 0 0 0 chr12 88296066 88296092 -32961438 + AT_rich Low_complexity Low_complexity 1 26 0 7 1258 527 204 10 0 chr12 88296092 88296190 -32961340 - B1_Mur2 SINE Alu -7 142 44 7 1258 2051 96 59 7 chr12 88296306 88296609 -32960921 - ORR1A2 LTR MaLR -8 319 1 7 1258 284 373 29 75 chr12 88296883 88297057 -32960473 - MamRep605 Unknown Unknown -260 616 451 7 1258 231 196 22 0 chr12 88297629 88297675 -32959855 - U2 snRNA snRNA -138 50 4 7 1258 817 171 0 15 chr12 88297699 88297830 -32959700 + B3 SINE B2 2 130 -86 7 1258 361 303 68 33 chr12 88298125 88298419 -32959111 - L1MC4 LINE L1 -113 7769 7479 7 1258 252 86 0 0 chr12 88298484 88298519 -32959011 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1258 1386 77 22 0 chr12 88298524 88298707 -32958823 - B2_Mm2 SINE B2 -8 187 1 7 1258 327 78 0 0 chr12 88298890 88298941 -32958589 + (CTTG)n Simple_repeat Simple_repeat 2 52 0 7 1258 261 0 0 0 chr12 88299050 88299079 -32958451 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 7 1258 620 134 196 0 chr12 88299085 88299197 -32958333 - B3A SINE B2 -64 134 1 8 1258 370 238 75 9 chr12 88299207 88299313 -32958217 - PB1D10 SINE Alu -1 116 4 8 1258 576 288 29 0 chr12 88299343 88299482 -32958048 - ID_B1 SINE B4 -71 153 11 8 1258 279 316 93 28 chr12 88299710 88299892 -32957638 - ORR1E LTR MaLR -165 194 1 8 1258 1325 264 64 21 chr12 88300031 88300412 -32957118 - MTE2b LTR MaLR -8 371 5 8 1258 1217 55 0 0 chr12 88300499 88300644 -32956886 - B1_Mus1 SINE Alu -1 147 3 8 1258 401 276 250 0 chr12 88300758 88300874 -32956656 + RSINE1 SINE B4 6 150 -15 8 1258 270 0 0 0 chr12 88301602 88301632 -32955898 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1258 378 74 0 0 chr12 88301701 88301755 -32955775 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1258 261 0 0 0 chr12 88301755 88301783 -32955747 + (GA)n Simple_repeat Simple_repeat 2 30 0 8 1258 723 286 24 10 chr12 88301949 88302157 -32955373 - ID_B1 SINE B4 -2 222 12 8 1258 613 238 85 0 chr12 88302287 88302451 -32955079 + B3A SINE B2 3 180 -18 8 1258 182 108 54 0 chr12 88302514 88302551 -32954979 + T-rich Low_complexity Low_complexity 3 41 0 8 1258 570 230 71 8 chr12 88304406 88304533 -32952997 + RSINE1 SINE B4 2 136 -29 8 1258 287 243 14 0 chr12 88306352 88306426 -32951104 + ID4_ SINE ID 2 76 -7 8 1258 194 291 74 25 chr12 88307246 88307327 -32950203 + MIRc SINE MIR 25 109 -159 8 1258 709 272 6 30 chr12 88307402 88307569 -32949961 + RSINE1 SINE B4 3 165 0 8 1258 1269 48 0 0 chr12 88307649 88307796 -32949734 + B1_Mm SINE Alu 1 147 0 8 1258 234 0 0 0 chr12 88307796 88307822 -32949708 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1258 639 196 82 15 chr12 88308029 88308164 -32949366 + B1_Mur3 SINE Alu 3 146 -3 8 1258 354 229 0 67 chr12 88308178 88308267 -32949263 - PB1D10 SINE Alu 0 117 35 8 1258 307 213 32 32 chr12 88308294 88308357 -32949173 - ID4_ SINE ID -19 64 2 8 1258 1086 260 46 25 chr12 88308397 88308681 -32948849 - B4A SINE B4 -2 290 1 8 1258 842 142 0 0 chr12 88308694 88308814 -32948716 - B1_Mus2 SINE Alu -11 136 17 8 1258 804 40 0 0 chr12 88310564 88310664 -32946866 + (TG)n Simple_repeat Simple_repeat 1 100 0 8 1258 546 290 68 37 chr12 88310692 88310882 -32946648 - B4A SINE B4 -41 251 56 8 1258 231 305 0 17 chr12 88311761 88311821 -32945709 + ID4_ SINE ID 24 82 -1 8 1258 322 277 39 29 chr12 88311906 88312010 -32945520 + PB1D10 SINE Alu 3 107 -10 8 1258 853 268 143 32 chr12 88312261 88312604 -32944926 - MTB LTR MaLR -14 386 6 8 1258 840 147 0 15 chr12 88312607 88312724 -32944806 + B1_Mur3 SINE Alu 21 136 -13 8 1258 405 0 0 0 chr12 88312724 88312769 -32944761 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 8 1258 840 147 0 15 chr12 88312769 88312782 -32944748 + B1_Mur3 SINE Alu 137 149 0 8 1258 607 212 36 7 chr12 88313421 88313559 -32943971 - B1_Mus2 SINE Alu -1 146 5 8 1258 198 0 0 0 chr12 88313579 88313601 -32943929 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 8 1258 415 130 565 0 chr12 88313747 88313885 -32943645 - B3 SINE B2 0 216 1 8 1258 521 228 9 0 chr12 88313890 88314004 -32943526 - PB1D7 SINE Alu -5 115 1 8 1258 32 0 0 0 chr12 88314656 88314688 -32942842 + AT_rich Low_complexity Low_complexity 1 32 0 8 1258 303 225 32 119 chr12 88314688 88314814 -32942716 + MER5B DNA MER1_type 50 164 -14 8 1258 525 16 0 0 chr12 88314976 88315038 -32942492 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1258 306 311 48 0 chr12 88315220 88315323 -32942207 + MIRb SINE MIR 72 179 -89 8 1258 21 36 0 0 chr12 88315750 88315778 -32941752 + GC_rich Low_complexity Low_complexity 1 28 0 8 1258 536 320 23 76 chr12 88317516 88317780 -32939750 + MIR SINE MIR 12 261 -1 8 1258 458 129 236 57 chr12 88317879 88318002 -32939528 + B2_Mm2 SINE B2 44 188 -7 8 1258 233 302 135 77 chr12 88318775 88319087 -32938443 + L2c LINE L2 3057 3386 -1 8 1258 615 229 77 66 chr12 88319304 88319486 -32938044 - B3A SINE B2 -14 184 1 8 1258 251 157 0 19 chr12 88319486 88319538 -32937992 + CT-rich Low_complexity Low_complexity 1 51 0 8 1258 1207 78 0 8 chr12 88320377 88320613 -32936917 + (TTC)n Simple_repeat Simple_repeat 1 233 0 8 1258 1319 82 21 21 chr12 88322911 88323097 -32934433 - B2_Mm2 SINE B2 -7 188 3 8 1258 226 355 138 6 chr12 88323155 88323322 -32934208 - L3 LINE CR1 -12 4477 4289 8 1258 465 50 0 0 chr12 88323407 88323467 -32934063 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1258 243 79 0 0 chr12 88324042 88324080 -32933450 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1258 224 312 28 5 chr12 88325388 88325499 -32932031 + MIRb SINE MIR 21 139 -129 8 1258 183 80 0 0 chr12 88328059 88328084 -32929446 + (CAGGC)n Simple_repeat Simple_repeat 5 29 0 8 1258 218 333 66 71 chr12 88328148 88328345 -32929185 + MIRb SINE MIR 4 199 -69 8 1258 299 275 124 26 chr12 88328895 88329048 -32928482 - MER53 DNA hAT -17 176 9 8 1258 253 263 63 50 chr12 88332193 88332316 -32925214 - MIRm SINE MIR -120 156 13 8 1258 183 42 0 0 chr12 88333153 88333177 -32924353 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1258 189 378 31 0 chr12 88333495 88333593 -32923937 + MIR SINE MIR 68 175 -93 8 1258 189 0 0 0 chr12 88333786 88333807 -32923723 + (CAA)n Simple_repeat Simple_repeat 2 22 0 8 1258 244 270 28 57 chr12 88334652 88334758 -32922772 - MIRc SINE MIR -52 216 114 8 1258 286 348 17 17 chr12 88334816 88334933 -32922597 + PB1D10 SINE Alu 1 117 0 8 1258 411 304 59 68 chr12 88335056 88335278 -32922252 + L2a LINE L2 3196 3415 -11 8 1258 294 29 0 0 chr12 88335707 88335742 -32921788 + (GGA)n Simple_repeat Simple_repeat 1 35 0 8 1258 188 257 64 51 chr12 88336156 88336234 -32921296 + MIR SINE MIR 43 121 -141 8 1258 322 268 40 104 chr12 88336273 88336398 -32921132 - PB1D7 SINE Alu -1 119 3 8 1258 626 335 28 0 chr12 88336398 88336478 -32921052 - ID SINE ID -137 87 3 8 1258 554 223 106 15 chr12 88336641 88336773 -32920757 - B1_Mur1 SINE Alu -5 144 1 8 1258 243 318 55 77 chr12 88336773 88336937 -32920593 - MT2B LTR ERVL -435 166 10 8 1258 1192 166 53 10 chr12 88336982 88337189 -32920341 + B3 SINE B2 1 216 0 8 1258 351 326 65 12 chr12 88337309 88337501 -32920029 - MIRb SINE MIR -68 200 3 8 1258 456 225 94 62 chr12 88337828 88337956 -32919574 - MLT1A1 LTR MaLR 0 408 277 8 1258 259 324 95 40 chr12 88338189 88338337 -32919193 + MIR SINE MIR 104 259 -3 8 1258 255 377 96 44 chr12 88338477 88338613 -32918917 - MLT1J LTR MaLR -110 402 260 8 1258 736 216 12 7 chr12 88338634 88338783 -32918747 - MTEa LTR MaLR 0 379 224 8 1258 180 97 0 0 chr12 88338860 88338891 -32918639 + (GA)n Simple_repeat Simple_repeat 2 32 0 8 1258 270 338 0 70 chr12 88338902 88338988 -32918542 - MTEa LTR MaLR -192 167 88 8 1258 540 241 157 12 chr12 88339128 88339300 -32918230 + B3A SINE B2 1 197 -1 8 1258 25 102 0 0 chr12 88339679 88339767 -32917763 + AT_rich Low_complexity Low_complexity 1 88 0 8 1258 1099 157 65 10 chr12 88339767 88339967 -32917563 - B3 SINE B2 -1 215 5 8 1258 338 323 15 0 chr12 88340401 88340531 -32916999 - L1M5 LINE L1 -376 5748 5617 8 1258 197 333 116 20 chr12 88340746 88340893 -32916637 - MIRb SINE MIR -11 257 97 8 1258 253 294 8 128 chr12 88341641 88341766 -32915764 + MER91B DNA Tip100 14 123 -67 8 1258 522 0 0 0 chr12 88341766 88341824 -32915706 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 1258 396 59 0 0 chr12 88341825 88341876 -32915654 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1258 192 333 101 29 chr12 88342104 88342243 -32915287 + MIR SINE MIR 40 188 -74 8 1259 940 56 50 0 chr12 88343079 88343240 -32914290 + (TC)n Simple_repeat Simple_repeat 1 169 0 8 1259 374 58 19 0 chr12 88343724 88343776 -32913754 + HAL1-3A_ME LINE L1 1966 2018 -840 8 1259 202 278 0 0 chr12 88343776 88343830 -32913700 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1259 297 296 116 36 chr12 88343833 88343872 -32913658 + B4A SINE B4 37 84 -208 8 1259 320 213 39 39 chr12 88343872 88343950 -32913580 + B1F1 SINE Alu 1 78 -71 8 1259 317 243 43 0 chr12 88343983 88344053 -32913477 + ID4 SINE ID 1 73 -10 8 1259 324 255 0 0 chr12 88345003 88345148 -32912382 + (CA)n Simple_repeat Simple_repeat 1 145 0 8 1259 504 101 0 0 chr12 88345209 88345298 -32912232 + (GA)n Simple_repeat Simple_repeat 2 90 0 8 1259 610 176 7 7 chr12 88345327 88345481 -32912049 + (CA)n Simple_repeat Simple_repeat 2 155 0 8 1259 322 270 109 34 chr12 88346807 88346926 -32910604 + MER45A DNA Tip100 31 158 -20 8 1259 261 219 0 0 chr12 88347186 88347227 -32910303 - B3A SINE B2 -65 133 93 8 1259 302 295 125 10 chr12 88347771 88347867 -32909663 + PB1D7 SINE Alu 7 113 -7 8 1259 1380 130 46 5 chr12 88347899 88348115 -32909415 + URR1B DNA MER1_type 1 225 0 8 1259 470 101 50 8 chr12 88348872 88348992 -32908538 + (TCTG)n Simple_repeat Simple_repeat 2 126 0 8 1259 225 207 0 49 chr12 88349313 88349374 -32908156 + L1MEf LINE L1 1152 1209 -4991 8 1259 695 203 159 0 chr12 88349529 88349711 -32907819 - B3 SINE B2 -4 212 2 8 1259 490 266 124 70 chr12 88349924 88350239 -32907291 - L1M4 LINE L1 -5378 1164 833 8 1259 801 226 11 47 chr12 88350534 88350706 -32906824 + B3A SINE B2 1 170 -28 8 1259 1104 133 0 0 chr12 88350706 88350886 -32906644 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1259 801 226 11 47 chr12 88350886 88350903 -32906627 + B3A SINE B2 171 183 -15 8 1259 1073 123 6 0 chr12 88350920 88351099 -32906431 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1259 315 269 42 16 chr12 88351598 88351697 -32905833 - PB1D10 SINE Alu -5 144 37 9 1259 1272 82 15 15 chr12 88352019 88352217 -32905313 - L1VL4 LINE L1 -5926 376 179 9 1259 264 224 17 0 chr12 88352450 88352508 -32905022 + 4.5SRNA scRNA scRNA 1 59 -35 9 1259 270 0 0 0 chr12 88352739 88352769 -32904761 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1259 6131 62 12 6 chr12 88352941 88353992 -32903538 + MusHAL1 LINE L1 495 1550 -1803 9 1259 9255 110 16 6 chr12 88353991 88355614 -32901916 + Lx2 LINE L1 5348 6996 -1 9 1259 559 264 41 8 chr12 88355644 88355766 -32901764 - RSINE1 SINE B4 -2 163 38 9 1259 657 259 14 0 chr12 88355819 88355958 -32901572 - B1_Mur2 SINE Alu -8 141 1 9 1259 415 347 118 39 chr12 88355961 88356216 -32901314 + L1M5 LINE L1 5083 5357 -789 9 1259 322 295 115 10 chr12 88356222 88356395 -32901135 + L1MCa LINE L1 1 184 -6324 9 1259 248 0 0 30 chr12 88356395 88356428 -32901102 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 9 1259 322 295 115 10 chr12 88356428 88356463 -32901067 + L1MCa LINE L1 185 231 -6277 9 1259 264 233 0 14 chr12 88356479 88356553 -32900977 + L1MB2 LINE L1 5858 5930 -253 9 1259 938 202 64 0 chr12 88356564 88356767 -32900763 + B3 SINE B2 1 216 0 9 1259 733 186 269 0 chr12 88356779 88356946 -32900584 + B3 SINE B2 5 216 0 9 1259 323 289 17 46 chr12 88356950 88357080 -32900450 + L1MB2 LINE L1 5932 6053 -118 9 1259 354 233 301 0 chr12 88357161 88357264 -32900266 + B1F SINE Alu 5 138 -11 9 1259 686 185 85 0 chr12 88357314 88357444 -32900086 + RSINE1 SINE B4 2 142 -23 9 1259 238 224 26 26 chr12 88357536 88357614 -32899916 + T-rich Low_complexity Low_complexity 1 78 0 9 1259 258 197 0 0 chr12 88357751 88357793 -32899737 + B3 SINE B2 1 42 -156 9 1259 491 45 0 0 chr12 88357793 88357859 -32899671 + L1_Mus2 LINE L1 6500 6565 -1 9 1259 1658 40 15 0 chr12 88357872 88358072 -32899458 + L1_Mus1 LINE L1 6365 6567 0 9 1259 848 233 55 6 chr12 88358092 88358273 -32899257 + B3 SINE B2 27 216 0 9 1259 255 329 0 28 chr12 88358385 88358400 -32899130 + ID SINE ID 8 77 -147 9 1259 282 263 0 0 chr12 88358400 88358457 -32899073 + ID4 SINE ID 20 76 -7 9 1259 22 0 0 0 chr12 88358467 88358489 -32899041 + AT_rich Low_complexity Low_complexity 1 22 0 9 1259 1133 263 108 24 chr12 88358557 88359133 -32898397 + L1MCa LINE L1 3399 4022 -2299 9 1259 1244 48 0 0 chr12 88359136 88359283 -32898247 + B1_Mm SINE Alu 1 147 0 9 1259 189 0 0 0 chr12 88359286 88359307 -32898223 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 9 1259 1282 89 11 27 chr12 88359325 88359509 -32898021 + B2_Mm2 SINE B2 1 181 -14 9 1259 228 224 0 20 chr12 88359831 88359881 -32897649 + L1MCa LINE L1 4091 4139 -2182 9 1259 510 300 15 37 chr12 88359884 88359994 -32897536 + RSINE1 SINE B4 5 115 -50 9 1259 324 0 0 0 chr12 88359994 88360030 -32897500 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1259 510 300 15 37 chr12 88360030 88360054 -32897476 + RSINE1 SINE B4 116 136 -29 9 1259 812 229 141 23 chr12 88360079 88360342 -32897188 + L1MCa LINE L1 4124 4417 -1904 9 1259 1372 226 114 12 chr12 88360390 88360722 -32896808 - ORR1D1 LTR MaLR -8 366 1 9 1259 1562 223 101 34 chr12 88360730 88361411 -32896119 + L1MCa LINE L1 5038 5740 -768 9 1259 509 294 43 58 chr12 88361582 88361911 -32895619 + L1ME3B LINE L1 5912 6235 -5 9 1259 660 87 0 0 chr12 88363882 88363974 -32893556 + (TC)n Simple_repeat Simple_repeat 2 93 0 9 1259 305 252 126 39 chr12 88364680 88364783 -32892747 - ORR1E LTR MaLR -4 375 264 9 1259 335 360 27 0 chr12 88364911 88365022 -32892508 - ORR1E LTR MaLR -212 147 34 9 1259 197 167 71 153 chr12 88365596 88365681 -32891849 - MIRb SINE MIR -77 191 114 9 1259 261 0 0 0 chr12 88365751 88365780 -32891750 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1259 239 250 0 0 chr12 88365782 88365834 -32891696 - B1_Mur4 SINE Alu -79 71 20 9 1259 23 33 0 0 chr12 88365852 88365882 -32891648 + AT_rich Low_complexity Low_complexity 1 30 0 9 1259 730 179 244 17 chr12 88365889 88366065 -32891465 - B3 SINE B2 0 216 1 9 1259 192 257 50 75 chr12 88366192 88366272 -32891258 - MIRm SINE MIR -148 128 51 9 1259 1229 36 0 0 chr12 88366764 88366903 -32890627 + B1_Mm SINE Alu 1 139 -8 9 1259 200 178 43 22 chr12 88368213 88368259 -32889271 - MIR SINE MIR -76 132 86 9 1259 214 139 47 0 chr12 88368294 88368337 -32889193 + C-rich Low_complexity Low_complexity 2 46 0 9 1259 192 40 0 0 chr12 88370018 88370043 -32887487 + (CCCCG)n Simple_repeat Simple_repeat 5 29 0 9 1259 414 264 0 35 chr12 88372814 88372928 -32884602 - PB1D9 SINE Alu -6 114 5 9 1259 444 37 0 0 chr12 88373218 88373272 -32884258 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1259 421 138 67 22 chr12 88373643 88373733 -32883797 - PB1D10 SINE Alu 0 127 25 9 1259 846 251 67 29 chr12 88373732 88374048 -32883482 - RLTR15 LTR ERVK -31 328 1 9 1259 564 271 24 8 chr12 88374094 88374217 -32883313 - ID_B1 SINE B4 -6 218 94 9 1259 4277 49 6 0 chr12 88374400 88374914 -32882616 - L1_Mus1 LINE L1 0 6567 6051 9 1259 423 0 0 0 chr12 88375043 88375090 -32882440 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1259 240 35 0 0 chr12 88375524 88375553 -32881977 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1259 822 169 0 29 chr12 88375554 88375694 -32881836 - B1_Mur4 SINE Alu -11 139 4 9 1259 651 247 34 87 chr12 88375694 88375745 -32881785 - B3A SINE B2 0 198 151 9 1259 180 111 0 0 chr12 88375745 88375772 -32881758 + (TA)n Simple_repeat Simple_repeat 2 28 0 9 1259 402 21 0 0 chr12 88375772 88375818 -32881712 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1259 651 247 34 87 chr12 88375818 88375973 -32881557 - B3A SINE B2 -48 150 3 9 1259 261 57 0 0 chr12 88376240 88376275 -32881255 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1259 1038 157 24 14 chr12 88376523 88376729 -32880801 - B2_Mm2 SINE B2 0 216 1 9 1259 840 212 93 0 chr12 88376754 88376947 -32880583 - B3 SINE B2 -5 211 1 9 1259 506 262 53 38 chr12 88376958 88377089 -32880441 - ID_B1 SINE B4 -8 216 84 9 1259 206 222 0 0 chr12 88377138 88377183 -32880347 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1259 280 234 25 49 chr12 88377212 88377293 -32880237 - L1M2 LINE L1 -3408 2735 2657 9 1259 205 159 36 24 chr12 88377331 88377415 -32880115 + GA-rich Low_complexity Low_complexity 1 85 0 9 1259 593 203 49 0 chr12 88377663 88377786 -32879744 + B1_Mur3 SINE Alu 2 130 -19 9 1259 319 274 120 64 chr12 88377953 88378078 -32879452 + B1F1 SINE Alu 1 132 -17 9 1259 311 266 38 12 chr12 88378489 88378569 -32878961 - ID4 SINE ID -1 82 1 9 1259 303 339 77 23 chr12 88380694 88380824 -32876706 + MIR SINE MIR 107 243 -19 9 1259 938 163 0 11 chr12 88381450 88381630 -32875900 + CT-rich Low_complexity Low_complexity 3 180 0 9 1259 183 276 51 17 chr12 88381737 88381796 -32875734 + MIRc SINE MIR 95 155 -113 9 1259 197 246 92 62 chr12 88382229 88382294 -32875236 - MIRm SINE MIR -46 230 164 9 1259 471 284 0 18 chr12 88382374 88382485 -32875045 - PB1D7 SINE Alu -9 111 3 9 1259 819 229 50 11 chr12 88382618 88382799 -32874731 + B3 SINE B2 1 188 -28 9 1259 40 31 0 15 chr12 88382822 88382873 -32874657 + AT_rich Low_complexity Low_complexity 1 51 0 9 1259 1410 71 0 16 chr12 88382873 88383059 -32874471 + B2_Mm2 SINE B2 2 184 -11 9 1259 40 31 0 15 chr12 88383059 88383072 -32874458 + AT_rich Low_complexity Low_complexity 1 13 0 9 1259 251 351 0 50 chr12 88385027 88385126 -32872404 + MER5A1 DNA MER1_type 10 103 -63 9 1259 185 240 100 0 chr12 88385467 88385517 -32872013 + MIRm SINE MIR 203 257 -19 9 1259 389 0 59 0 chr12 88386201 88386252 -32871278 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 9 1259 390 329 84 6 chr12 88386510 88386720 -32870810 - MIR SINE MIR -34 234 1 9 1259 315 0 0 0 chr12 88387789 88387824 -32869706 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 9 1259 978 148 14 0 chr12 88387824 88387966 -32869564 - B1_Mur3 SINE Alu -4 145 2 9 1259 192 77 0 0 chr12 88387974 88388000 -32869530 + (TC)n Simple_repeat Simple_repeat 1 26 0 9 1259 459 82 0 0 chr12 88388010 88388083 -32869447 + (CA)n Simple_repeat Simple_repeat 2 74 0 9 1259 189 249 188 0 chr12 88388387 88388464 -32869066 + MIRb SINE MIR 81 171 -97 9 1259 324 0 0 0 chr12 88389490 88389526 -32868004 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1259 181 242 31 31 chr12 88389644 88389708 -32867822 + L3 LINE CR1 3501 3564 -925 9 1259 639 262 36 41 chr12 88390083 88390278 -32867252 - B3A SINE B2 -2 196 3 9 1259 265 304 141 16 chr12 88390923 88391101 -32866429 - MIR SINE MIR -61 201 17 9 1259 853 174 6 6 chr12 88391277 88391297 -32866233 + polypyrimidine Low_complexity Low_complexity 161 179 0 9 1259 1373 75 26 11 chr12 88391297 88391487 -32866043 - B2_Mm2 SINE B2 -1 194 2 9 1259 853 174 6 6 chr12 88391487 88391645 -32865885 + CT-rich Low_complexity Low_complexity 2 160 0 9 1259 1046 140 0 6 chr12 88391647 88391827 -32865703 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 9 1259 932 164 6 0 chr12 88391853 88392030 -32865500 + CT-rich Low_complexity Low_complexity 1 178 0 9 1259 958 118 40 27 chr12 88392030 88392178 -32865352 - B1_Mur4 SINE Alu 0 150 1 9 1259 1088 108 5 158 chr12 88392250 88392313 -32865217 - B2_Mm2 SINE B2 -8 187 142 9 1259 432 118 0 0 chr12 88392313 88392381 -32865149 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1259 1088 108 5 158 chr12 88392381 88392538 -32864992 - B2_Mm2 SINE B2 -54 141 1 9 1259 1029 173 110 0 chr12 88393096 88393287 -32864243 - B3 SINE B2 -4 212 1 9 1259 188 352 144 0 chr12 88393361 88393486 -32864044 + L2b LINE L2 3002 3144 -231 9 1259 230 293 85 0 chr12 88393535 88393617 -32863913 + B3 SINE B2 87 175 -41 9 1259 23 0 0 0 chr12 88393625 88393648 -32863882 + AT_rich Low_complexity Low_complexity 1 23 0 9 1259 942 58 0 0 chr12 88393860 88393981 -32863549 + (TG)n Simple_repeat Simple_repeat 2 122 0 9 1259 1650 269 136 29 chr12 88394402 88394536 -32862994 - Lx8 LINE L1 -3 7470 7326 1 1259 1386 109 10 0 chr12 88394536 88394729 -32862801 + B2_Mm2 SINE B2 1 195 0 1 1259 1650 269 136 29 chr12 88394729 88395190 -32862340 - Lx8 LINE L1 -148 7325 6811 1 1259 329 391 10 40 chr12 88395342 88395542 -32861988 - MIR SINE MIR -14 248 55 1 1259 246 322 129 68 chr12 88395907 88396247 -32861283 + L2a LINE L2 2480 2840 -579 1 1259 217 298 135 16 chr12 88396373 88396499 -32861031 + L2a LINE L2 3286 3426 0 1 1259 1065 278 19 8 chr12 88396678 88396939 -32860591 + B4 SINE B4 4 267 -25 1 1259 231 342 26 0 chr12 88399405 88399481 -32858049 + Charlie12 DNA MER1_type 2 79 -2794 1 1259 233 318 117 53 chr12 88401835 88402041 -32855489 - MLT1K LTR MaLR -27 568 350 1 1259 250 340 0 57 chr12 88403019 88403178 -32854352 + (CATG)n Simple_repeat Simple_repeat 3 152 0 1 1259 251 253 0 51 chr12 88403096 88403175 -32854355 + (CATA)n Simple_repeat Simple_repeat 1 75 0 1 1259 1219 209 21 48 chr12 88403321 88403612 -32853918 - MT2B LTR ERVL 0 601 319 1 1259 186 43 0 0 chr12 88404483 88404506 -32853024 + (TTCCC)n Simple_repeat Simple_repeat 1 23 0 1 1259 738 190 230 22 chr12 88405437 88405615 -32851915 - B3 SINE B2 0 216 2 1 1259 670 202 0 0 chr12 88405621 88405740 -32851790 - ID_B1 SINE B4 -3 221 103 1 1259 300 318 121 48 chr12 88405781 88406029 -32851501 - L1M5 LINE L1 -449 5724 5459 1 1259 200 384 118 16 chr12 88406612 88406739 -32850791 + MIRm SINE MIR 13 152 -124 1 1259 1363 147 117 23 chr12 88408157 88408421 -32849109 - MTC LTR MaLR 0 421 133 1 1259 614 117 117 0 chr12 88408595 88408698 -32848832 - MTC LTR MaLR -301 120 6 1 1259 227 284 33 25 chr12 88409746 88409871 -32847659 + MIR SINE MIR 84 206 -56 1 1259 365 0 0 22 chr12 88410580 88410626 -32846904 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1259 718 303 47 67 chr12 88410641 88410938 -32846592 - B4A SINE B4 0 292 2 1 1259 387 0 0 0 chr12 88411410 88411453 -32846077 + (CCCCCA)n Simple_repeat Simple_repeat 1 43 0 1 1259 253 238 22 77 chr12 88411471 88411562 -32845968 - MTEb LTR MaLR 0 379 294 1 1259 1202 68 0 0 chr12 88414643 88414789 -32842741 + B1_Mm SINE Alu 1 146 -1 1 1259 1075 214 43 5 chr12 88414884 88415091 -32842439 - B3 SINE B2 0 216 2 1 1259 914 86 0 26 chr12 88415112 88415267 -32842263 + (TCCCC)n Simple_repeat Simple_repeat 1 151 0 1 1259 544 224 52 0 chr12 88415273 88415407 -32842123 - B1_Mur4 SINE Alu -5 145 5 1 1259 414 0 0 0 chr12 88415480 88415526 -32842004 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1 1259 246 319 110 0 chr12 88417692 88417783 -32839747 - MER117 DNA MER1_type 0 197 97 1 1259 297 307 0 0 chr12 88417762 88417837 -32839693 - MER117 DNA MER1_type -33 164 90 1 1259 842 172 0 27 chr12 88417926 88418075 -32839455 - B1_Mur2 SINE Alu 0 149 5 1 1259 570 54 0 0 chr12 88418517 88418591 -32838939 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1259 249 262 73 55 chr12 88419026 88419135 -32838395 - Charlie4 DNA MER1_type -9 1952 1842 1 1259 328 333 7 28 chr12 88419146 88419288 -32838242 - L1MD2 LINE L1 -85 6274 6136 1 1259 548 214 75 146 chr12 88419313 88419526 -32838004 + B3A SINE B2 1 198 0 1 1259 427 326 105 61 chr12 88419528 88419986 -32837544 - Charlie4 DNA MER1_type -134 1827 1350 1 1259 396 0 0 0 chr12 88420258 88420302 -32837228 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1259 246 32 0 0 chr12 88420302 88420333 -32837197 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1259 180 0 0 0 chr12 88420333 88420352 -32837178 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1259 249 275 0 0 chr12 88420381 88420450 -32837080 - Charlie4 DNA MER1_type -1822 139 71 1 1259 763 210 82 23 chr12 88420457 88420628 -32836902 + B3A SINE B2 2 182 -16 1 1259 213 39 0 0 chr12 88421008 88421034 -32836496 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1259 2879 184 30 15 chr12 88421034 88421570 -32835960 - Lx4B LINE L1 -14 7044 6501 1 1259 207 114 0 0 chr12 88424545 88424580 -32832950 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1259 291 164 0 0 chr12 88426176 88426237 -32831293 + GA-rich Low_complexity Low_complexity 4 64 0 1 1259 900 146 7 0 chr12 88426646 88426790 -32830740 + B1_Mur4 SINE Alu 6 150 0 1 1259 821 152 0 13 chr12 88426879 88427032 -32830498 + GA-rich Low_complexity Low_complexity 2 152 0 1 1259 831 55 15 30 chr12 88427060 88427191 -32830339 + (GGAAA)n Simple_repeat Simple_repeat 2 130 0 1 1259 268 303 73 39 chr12 88428034 88428240 -32829290 - L2c LINE L2 -192 3195 2983 1 1259 270 0 0 0 chr12 88428715 88428745 -32828785 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1 1259 497 228 32 24 chr12 88428770 88428896 -32828634 - PB1 SINE Alu 0 127 1 1 1259 360 0 0 0 chr12 88431022 88431062 -32826468 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1259 230 280 39 39 chr12 88434830 88434934 -32822596 - L2a LINE L2 -143 3283 3180 1 1259 249 337 129 11 chr12 88435014 88435200 -32822330 - L2a LINE L2 -406 3013 2806 1 1259 1127 114 74 0 chr12 88435216 88435391 -32822139 - B2_Mm2 SINE B2 -6 189 2 1 1259 258 296 135 8 chr12 88435480 88435606 -32821924 - L1MB4 LINE L1 -36 6144 6003 1 1259 275 353 178 16 chr12 88436614 88436856 -32820674 - L2a LINE L2 -1308 2111 1831 1 1259 450 0 0 0 chr12 88436869 88436919 -32820611 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1259 324 0 0 0 chr12 88436919 88436954 -32820576 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1259 477 0 0 0 chr12 88436954 88437006 -32820524 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1259 422 369 66 22 chr12 88437670 88437944 -32819586 - ORR1E LTR MaLR -31 328 43 1 1259 234 296 169 43 chr12 88438111 88438295 -32819235 - MLT1J2 LTR MaLR -233 215 9 1 1259 233 343 88 0 chr12 88440333 88440435 -32817095 + MLT1H2 LTR MaLR 287 397 -92 1 1259 590 153 144 8 chr12 88440592 88440717 -32816813 - B1_Mus1 SINE Alu 0 148 7 1 1259 190 237 174 51 chr12 88440739 88440837 -32816693 - MIRm SINE MIR -96 180 71 1 1259 378 0 0 0 chr12 88441508 88441550 -32815980 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1259 211 253 19 46 chr12 88442170 88442257 -32815273 - MIRc SINE MIR -129 139 47 1 1259 446 136 0 12 chr12 88442501 88442583 -32814947 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 1 1259 279 243 125 28 chr12 88443663 88443735 -32813795 + PB1D10 SINE Alu 12 90 -27 1 1259 290 250 101 11 chr12 88444264 88444278 -32813252 + B4 SINE B4 73 94 -198 1 1259 511 184 101 0 chr12 88444278 88444387 -32813143 + PB1D9 SINE Alu 1 120 0 1 1259 309 289 131 7 chr12 88444393 88444546 -32812984 + B4A SINE B4 82 253 -39 1 1259 1125 81 0 33 chr12 88445530 88445683 -32811847 + B1_Mus1 SINE Alu 1 148 0 1 1259 326 307 110 61 chr12 88445729 88445892 -32811638 - MIRb SINE MIR -80 188 18 1 1259 607 263 56 17 chr12 88445963 88446141 -32811389 + MER63A DNA AcHobo 14 198 -12 1 1259 860 119 30 0 chr12 88446478 88446612 -32810918 + B1_Mur3 SINE Alu 10 147 -2 1 1259 351 0 0 0 chr12 88446631 88446670 -32810860 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1259 234 62 0 0 chr12 88446703 88446735 -32810795 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1259 200 272 151 11 chr12 88447522 88447615 -32809915 - L3 LINE CR1 -2252 2237 2132 1 1259 348 237 43 0 chr12 88451431 88451524 -32806006 + MIR SINE MIR 36 132 -76 1 1259 288 299 78 50 chr12 88451943 88452084 -32805446 + MIR SINE MIR 7 151 -111 1 1259 319 292 53 15 chr12 88453227 88453359 -32804171 - MER106B DNA MER1_type -4 1055 919 1 1259 335 325 103 44 chr12 88453617 88453820 -32803710 - MER20 DNA MER1_type -4 215 1 1 1259 1191 147 44 10 chr12 88454006 88454212 -32803318 - ORR1C2 LTR MaLR 0 384 172 1 1259 180 219 0 0 chr12 88454217 88454258 -32803272 + GA-rich Low_complexity Low_complexity 1 41 0 1 1259 289 240 74 61 chr12 88454259 88454490 -32803040 - RMER17A LTR ERVK -334 417 184 1 1259 801 129 73 0 chr12 88454458 88454582 -32802948 + B1_Mus2 SINE Alu 12 144 -3 1 1259 355 94 46 15 chr12 88454595 88454660 -32802870 - ORR1C2 LTR MaLR -238 146 80 1 1259 1203 75 0 0 chr12 88454698 88454844 -32802686 - B1_Mus1 SINE Alu -1 147 2 1 1259 658 73 31 0 chr12 88454847 88454943 -32802587 - ORR1C2 LTR MaLR -285 99 1 1 1259 324 70 0 0 chr12 88455163 88455206 -32802324 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1259 276 149 0 0 chr12 88455278 88455325 -32802205 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 1259 225 370 78 11 chr12 88455853 88456044 -32801486 + Charlie22a DNA MER1_type 21 224 -267 1 1259 400 310 103 6 chr12 88456232 88456388 -32801142 + MIR SINE MIR 10 180 -82 1 1259 180 125 0 0 chr12 88456390 88456422 -32801108 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1259 960 264 43 129 chr12 88456440 88456847 -32800683 + MTD LTR MaLR 1 372 -47 1 1259 2386 140 28 3 chr12 88456847 88457205 -32800325 + ORR1B2 LTR MaLR 1 367 0 1 1259 960 265 43 110 chr12 88457205 88457252 -32800278 + MTD LTR MaLR 330 405 -14 1 1259 687 232 0 27 chr12 88459896 88460042 -32797488 - RSINE1 SINE B4 -20 145 4 1 1259 799 151 64 7 chr12 88460224 88460364 -32797166 + B1_Mur1 SINE Alu 2 149 0 1 1259 218 32 32 0 chr12 88461239 88461270 -32796260 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1259 237 132 0 0 chr12 88461271 88461309 -32796221 + (CACG)n Simple_repeat Simple_repeat 1 38 0 1 1259 331 310 124 58 chr12 88461312 88461569 -32795961 - L1MEg LINE L1 -5375 709 436 1 1259 273 250 47 103 chr12 88461783 88461820 -32795710 + B4 SINE B4 49 79 -213 1 1259 425 170 182 91 chr12 88461820 88461930 -32795600 + B1_Mur4 SINE Alu 1 120 0 1 1259 1289 87 27 0 chr12 88462504 88462689 -32794841 + B2_Mm1t SINE B2 1 190 -3 1 1259 405 0 0 0 chr12 88465381 88465426 -32792104 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1259 180 0 0 0 chr12 88465426 88465445 -32792085 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1259 876 169 250 0 chr12 88466172 88466344 -32791186 + B3 SINE B2 2 216 0 1 1259 929 263 75 8 chr12 88466363 88466631 -32790899 + B4A SINE B4 2 287 -5 1 1259 379 330 47 58 chr12 88466775 88466965 -32790565 + L1ME4a LINE L1 5680 5867 -257 1 1259 308 380 77 11 chr12 88466998 88467179 -32790351 - MIR SINE MIR -37 225 33 1 1259 660 160 136 0 chr12 88469373 88469498 -32788032 - B1_Mus2 SINE Alu -5 142 1 1 1259 252 0 0 0 chr12 88469796 88469824 -32787706 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1259 951 148 7 0 chr12 88470039 88470188 -32787342 + B1_Mur4 SINE Alu 1 150 0 1 1259 224 389 70 16 chr12 88470253 88470381 -32787149 + MIRb SINE MIR 3 137 -131 1 1259 1370 75 37 21 chr12 88470381 88470572 -32786958 - B2_Mm2 SINE B2 -1 194 1 1 1259 320 59 59 0 chr12 88470666 88470734 -32786796 + (TTTTTG)n Simple_repeat Simple_repeat 2 73 0 1 1259 1176 61 0 0 chr12 88470735 88470882 -32786648 - B1_Mus2 SINE Alu 0 147 1 1 1259 300 186 0 0 chr12 88471483 88471542 -32785988 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1259 183 80 0 0 chr12 88471789 88471814 -32785716 + (TCTCC)n Simple_repeat Simple_repeat 4 28 0 1 1259 383 317 74 65 chr12 88471955 88472171 -32785359 + MIR SINE MIR 28 245 -17 1 1259 226 257 0 121 chr12 88472876 88473000 -32784530 + Charlie4z DNA MER1_type 3 111 -56 1 1259 385 340 80 37 chr12 88473148 88473310 -32784220 - MIRb SINE MIR -14 254 86 1 1259 261 213 82 0 chr12 88473496 88473557 -32783973 + ID2 SINE ID 1 66 -17 1 1260 306 349 138 15 chr12 88474788 88475056 -32782474 + L2 LINE L2 2782 3082 -337 1 1260 592 265 96 0 chr12 88475209 88475345 -32782185 + RSINE1 SINE B4 3 151 -14 1 1260 503 260 177 28 chr12 88476043 88476292 -32781238 + B4A SINE B4 2 287 -5 1 1260 1031 98 0 0 chr12 88477528 88477661 -32779869 + B1_Mus2 SINE Alu 1 133 -14 1 1260 180 111 0 0 chr12 88477674 88477701 -32779829 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1260 851 156 16 0 chr12 88478209 88478337 -32779193 + B1_Mur2 SINE Alu 3 132 -17 1 1260 216 0 0 0 chr12 88478343 88478367 -32779163 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1260 585 42 0 0 chr12 88479348 88479420 -32778110 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1260 519 17 0 0 chr12 88479664 88479724 -32777806 + (GGGGA)n Simple_repeat Simple_repeat 1 60 0 1 1260 346 278 11 22 chr12 88480242 88480334 -32777196 - L1MB7 LINE L1 -72 6112 6022 1 1260 265 244 44 44 chr12 88480328 88480418 -32777112 - L1MB7 LINE L1 -337 5837 5748 1 1260 5466 64 3 6 chr12 88480787 88481516 -32776014 + L1Md_F2 LINE L1 5882 6582 0 1 1260 267 286 44 0 chr12 88482615 88482706 -32774824 + LTR40c LTR ERVL 8 102 -363 1 1260 452 252 37 30 chr12 88482691 88482826 -32774704 + LTR40c LTR ERVL 326 461 -4 1 1260 730 247 114 5 chr12 88483007 88483227 -32774303 + B4A SINE B4 43 286 -6 1 1260 662 192 281 0 chr12 88483668 88483835 -32773695 - B3 SINE B2 -1 215 2 1 1260 4252 38 20 4 chr12 88483860 88484368 -32773162 - L1Md_F2 LINE L1 -3 6579 6064 1 1260 2726 137 19 2 chr12 88484368 88484779 -32772751 + MTC LTR MaLR 4 421 0 1 1260 1165 316 132 15 chr12 88485030 88485627 -32771903 + HERVL40-int LTR ERVL 3502 4168 -1362 1 1260 709 259 17 17 chr12 88486606 88486783 -32770747 + HERVL40-int LTR ERVL 5348 5524 -6 1 1260 1220 54 7 0 chr12 88486828 88486975 -32770555 + B1_Mus1 SINE Alu 1 148 0 1 1260 658 287 132 55 chr12 88487084 88487438 -32770092 + LTR40c LTR ERVL 56 478 -41 1 1260 428 223 18 55 chr12 88489217 88489326 -32768204 - PB1D10 SINE Alu 0 117 13 1 1260 1093 246 74 94 chr12 88489802 88490152 -32767378 + MTE2a LTR MaLR 35 377 -2 1 1260 1171 75 0 7 chr12 88490198 88490346 -32767184 + B1_Mm SINE Alu 1 147 0 1 1260 1710 168 58 0 chr12 88490384 88490676 -32766854 - RLTR27 LTR ERVK 0 309 1 1 1260 1529 150 4 34 chr12 88490676 88490945 -32766585 - MMERVK10C-int LTR ERVK 0 7581 7321 1 1260 6729 296 36 50 chr12 88491244 88494725 -32762805 - MMERVK10C-int LTR ERVK -2103 5478 2044 1 1260 597 25 13 0 chr12 88494734 88494813 -32762717 - RLTRETN_Mm LTR ERVK -242 80 1 1 1260 1436 316 58 32 chr12 88494841 88495671 -32761859 - MMERVK10C-int LTR ERVK -4954 1588 738 1 1260 704 222 45 64 chr12 88496040 88496242 -32761288 - RLTR10-int LTR ERVK -1135 852 655 1 1260 333 67 38 0 chr12 88496274 88496327 -32761203 - RLTR10-int LTR ERVK -7314 267 163 1 1260 2053 134 10 13 chr12 88496352 88496661 -32760869 - RLTR27 LTR ERVK 0 309 2 1 1260 290 329 98 17 chr12 88497324 88497497 -32760033 - Charlie8 DNA MER1_type -2174 254 68 1 1260 703 166 28 5 chr12 88497502 88497650 -32759880 + B3 SINE B2 1 157 -38 1 1260 833 206 39 73 chr12 88497650 88497854 -32759676 - B3A SINE B2 -1 197 1 1 1260 695 219 94 17 chr12 88497854 88497886 -32759644 + B2_Mm2 SINE B2 158 195 0 1 1260 629 263 6 25 chr12 88497926 88498086 -32759444 - Tigger5 DNA MER2_type -2246 160 4 1 1260 519 301 80 13 chr12 88499365 88499574 -32757956 - MIR SINE MIR -32 236 20 1 1260 292 312 0 30 chr12 88499686 88499785 -32757745 - MIR SINE MIR -134 128 33 1 1260 243 0 0 0 chr12 88500899 88500926 -32756604 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1260 268 256 148 30 chr12 88501609 88501778 -32755752 + Tigger1 DNA MER2_type 2228 2416 -2 2 1260 1155 164 14 9 chr12 88503224 88503440 -32754090 + URR1A DNA MER1_type 1 217 -9 3 1260 1498 127 138 13 chr12 88504829 88505141 -32752389 - ORR1B2 LTR MaLR -11 356 6 4 1260 1079 240 113 9 chr12 88505387 88505723 -32751807 + MTE2b LTR MaLR 7 377 -2 5 1260 913 173 0 13 chr12 88505772 88505924 -32751606 + B1_Mur4 SINE Alu 1 150 0 6 1260 863 235 14 36 chr12 88506589 88506810 -32750720 - B3 SINE B2 0 216 1 7 1260 894 234 10 10 chr12 88506831 88507030 -32750500 - B3 SINE B2 -17 199 1 8 1260 900 179 146 5 chr12 88514188 88514373 -32743157 + B3 SINE B2 1 211 -5 9 1260 1073 72 7 0 chr12 88514408 88514546 -32742984 + B1_Mm SINE Alu 1 139 -8 1 1260 207 0 0 0 chr12 88514546 88514569 -32742961 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1260 216 111 0 0 chr12 88515004 88515040 -32742490 + (TCC)n Simple_repeat Simple_repeat 2 37 0 1 1260 279 0 0 0 chr12 88516145 88516176 -32741354 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1260 712 219 6 66 chr12 88516188 88516354 -32741176 - B3A SINE B2 -42 156 1 1 1260 434 250 238 48 chr12 88517296 88517464 -32740066 - RMER30 DNA MER1_type -1 201 2 1 1260 291 266 35 148 chr12 88518218 88518421 -32739109 - B3A SINE B2 -16 182 3 1 1260 238 248 123 80 chr12 88518630 88518792 -32738738 + RMER15 LTR ERVL 392 560 -15 1 1260 781 287 102 42 chr12 88518951 88519346 -32738184 + Charlie1b DNA MER1_type 12 426 -97 1 1260 505 295 0 0 chr12 88519346 88519458 -32738072 - PB1D7 SINE Alu -8 112 1 1 1260 781 287 102 42 chr12 88519458 88519513 -32738017 + Charlie1b DNA MER1_type 427 489 -34 1 1260 1134 62 7 7 chr12 88519524 88519671 -32737859 + B1_Mus1 SINE Alu 2 148 0 2 1260 399 41 0 0 chr12 88520177 88520226 -32737304 + (CAA)n Simple_repeat Simple_repeat 3 51 0 2 1260 288 0 0 0 chr12 88520591 88520623 -32736907 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1260 309 151 0 0 chr12 88520766 88520819 -32736711 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1260 231 203 48 63 chr12 88521283 88521346 -32736184 - B3 SINE B2 -37 179 118 2 1260 426 264 97 79 chr12 88521311 88521578 -32735952 - B4A SINE B4 -10 282 11 2 1260 768 213 73 34 chr12 88521959 88522163 -32735367 + B3 SINE B2 3 214 -2 2 1260 1190 54 0 13 chr12 88522497 88522647 -32734883 - B1_Mus1 SINE Alu 0 148 1 2 1260 356 198 139 0 chr12 88522648 88522662 -32734868 + B1F SINE Alu 26 140 -9 2 1260 438 184 11 0 chr12 88522662 88522749 -32734781 + ID_B1 SINE B4 128 215 -9 2 1260 1003 225 14 0 chr12 88522799 88523012 -32734518 + B3 SINE B2 1 216 0 3 1260 686 12 0 0 chr12 88523181 88523265 -32734265 + L1Md_T LINE L1 6499 6582 0 3 1260 315 122 0 0 chr12 88523442 88523491 -32734039 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1260 1139 48 164 23 chr12 88523500 88523671 -32733859 + B2_Mm2 SINE B2 1 195 0 3 1260 488 288 42 42 chr12 88523671 88523875 -32733655 + L1M2 LINE L1 5392 5598 -699 3 1260 448 303 25 19 chr12 88523924 88524082 -32733448 + B4A SINE B4 49 207 -85 3 1260 334 232 108 31 chr12 88524165 88524294 -32733236 + L1M2 LINE L1 5597 5735 -454 3 1260 272 313 0 0 chr12 88524429 88524496 -32733034 - B4A SINE B4 0 292 226 3 1260 258 256 101 13 chr12 88526357 88526436 -32731094 + MLT1A1 LTR MaLR 289 374 -34 3 1260 237 259 37 0 chr12 88526444 88526498 -32731032 + ID4_ SINE ID 23 78 -5 3 1260 408 263 29 22 chr12 88526672 88526808 -32730722 + L1M3 LINE L1 2223 2359 -3781 3 1260 227 288 0 40 chr12 88526965 88527041 -32730489 + L1M3 LINE L1 2357 2429 -3711 3 1260 268 272 12 24 chr12 88527048 88527131 -32730399 + PB1D10 SINE Alu 36 117 0 4 1260 1924 119 37 25 chr12 88527194 88527548 -32729982 + ORR1B1 LTR MaLR 29 386 -8 4 1260 493 264 0 7 chr12 88527820 88527939 -32729591 - PB1 SINE Alu 0 120 10 4 1260 1085 247 40 170 chr12 88527954 88528284 -32729246 + MTE2b LTR MaLR 1 271 -108 4 1260 1521 172 113 62 chr12 88528284 88528638 -32728892 + ORR1D1 LTR MaLR 1 372 -2 4 1260 1085 247 40 170 chr12 88528638 88528736 -32728794 + MTE2b LTR MaLR 272 373 -6 4 1260 21 36 0 0 chr12 88529033 88529061 -32728469 + AT_rich Low_complexity Low_complexity 1 28 0 4 1260 372 77 0 0 chr12 88529152 88529204 -32728326 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1260 871 185 7 0 chr12 88529241 88529387 -32728143 - B1_Mur1 SINE Alu 0 149 3 4 1260 321 26 0 0 chr12 88529412 88529450 -32728080 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1260 437 248 65 86 chr12 88529484 88529762 -32727768 - B4 SINE B4 -17 275 4 4 1260 647 266 148 20 chr12 88529763 88529966 -32727564 - B4A SINE B4 -62 230 2 5 1260 22 56 0 0 chr12 88530033 88530069 -32727461 + AT_rich Low_complexity Low_complexity 1 36 0 5 1260 232 371 128 15 chr12 88530090 88530377 -32727153 - L2b LINE L2 -5 3382 3071 5 1260 432 0 0 0 chr12 88530380 88530428 -32727102 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1260 273 324 0 0 chr12 88530467 88530535 -32726995 + ID4_ SINE ID 2 69 -14 5 1260 764 132 93 98 chr12 88530622 88530816 -32726714 - B2_Mm2 SINE B2 -1 194 2 5 1260 289 267 38 38 chr12 88531472 88531577 -32725953 + MLT1N2 LTR MaLR 451 555 -7 5 1260 800 319 44 7 chr12 88531743 88532040 -32725490 - Tigger1 DNA MER2_type -2109 309 2 5 1260 186 43 0 0 chr12 88532603 88532626 -32724904 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 5 1260 1197 61 0 0 chr12 88533206 88533353 -32724177 + B1_Mus1 SINE Alu 2 148 0 5 1260 1191 82 52 52 chr12 88533380 88533573 -32723957 + B2_Mm1t SINE B2 1 193 0 6 1260 203 176 0 0 chr12 88534112 88534146 -32723384 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 6 1260 746 212 134 26 chr12 88534373 88534567 -32722963 + B3 SINE B2 1 215 -1 6 1260 371 322 93 33 chr12 88534599 88534782 -32722748 + B3A SINE B2 1 194 -4 6 1260 321 208 274 4 chr12 88534790 88534895 -32722635 + B1_Mus1 SINE Alu 2 123 -25 6 1260 252 0 0 0 chr12 88534895 88534923 -32722607 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 6 1260 1130 83 0 0 chr12 88535181 88535325 -32722205 + B1_Mus2 SINE Alu 2 145 -2 6 1260 180 0 0 0 chr12 88535325 88535345 -32722185 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 1260 1294 111 26 0 chr12 88535448 88535638 -32721892 - B2_Mm2 SINE B2 0 195 1 6 1260 274 198 164 55 chr12 88535942 88536070 -32721460 - L1MC LINE L1 -2054 5828 5687 6 1260 209 33 33 0 chr12 88537067 88537097 -32720433 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1260 725 197 7 28 chr12 88537097 88537238 -32720292 - B1_Mur3 SINE Alu -11 138 1 7 1260 234 0 0 0 chr12 88537451 88537477 -32720053 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1260 790 249 20 82 chr12 88538225 88538531 -32718999 - RLTR12B LTR ERVK -195 333 47 7 1260 223 170 0 0 chr12 88538685 88538732 -32718798 + A-rich Low_complexity Low_complexity 1 47 0 7 1260 392 211 0 0 chr12 88539271 88539342 -32718188 - MER20 DNA MER1_type -146 73 3 7 1260 231 242 152 0 chr12 88539703 88539769 -32717761 - ID4_ SINE ID 0 83 8 7 1260 277 317 15 45 chr12 88540081 88540213 -32717317 - MIR SINE MIR -50 212 85 7 1260 22 0 0 0 chr12 88541318 88541340 -32716190 + GC_rich Low_complexity Low_complexity 1 22 0 7 1260 379 301 9 0 chr12 88543620 88543733 -32713797 + B1F1 SINE Alu 24 137 -12 7 1260 414 0 0 0 chr12 88543746 88543792 -32713738 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1260 25 0 0 0 chr12 88543886 88543911 -32713619 + AT_rich Low_complexity Low_complexity 1 25 0 8 1260 12053 146 12 45 chr12 88544773 88544832 -32712698 - MurERV4_19-int LTR ERVK -3341 2439 2389 8 1260 3451 45 40 5 chr12 88544832 88545253 -32712277 - RLTR10C LTR ERVK 0 436 1 8 1260 12053 146 12 45 chr12 88545253 88546631 -32710899 - MurERV4_19-int LTR ERVK -3392 2388 1014 8 1260 272 25 50 0 chr12 88546631 88546671 -32710859 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 8 1260 2213 110 91 27 chr12 88546671 88547046 -32710484 - RLTR9D LTR ERVK -4 399 1 8 1260 1050 83 21 0 chr12 88547055 88547200 -32710330 - B1_Mus1 SINE Alu 0 148 1 8 1260 12053 146 12 45 chr12 88547200 88547526 -32710004 - MurERV4_19-int LTR ERVK -4769 1011 714 8 1260 1484 73 5 5 chr12 88547526 88547720 -32709810 + B2_Mm2 SINE B2 2 195 0 8 1260 12053 146 12 45 chr12 88547720 88548011 -32709519 - MurERV4_19-int LTR ERVK -5067 713 440 8 1260 339 255 201 70 chr12 88548373 88548854 -32708676 - L1MC4a LINE L1 -1467 6528 5921 8 1260 847 36 0 0 chr12 88548928 88549038 -32708492 + B1_Mus1 SINE Alu 2 111 -37 8 1260 3720 38 20 0 chr12 88549058 88549509 -32708021 - L1Md_F2 LINE L1 0 6582 6123 9 1260 1326 51 74 0 chr12 88549911 88549935 -32707595 - B2_Mm1a SINE B2 -3 190 162 9 1260 270 0 0 0 chr12 88549935 88549965 -32707565 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 9 1260 1326 51 74 0 chr12 88549965 88550116 -32707414 - B2_Mm1a SINE B2 -32 161 3 9 1260 1037 122 194 0 chr12 88550201 88550381 -32707149 + B3 SINE B2 2 216 0 9 1260 36 70 0 0 chr12 88550500 88550571 -32706959 + AT_rich Low_complexity Low_complexity 1 71 0 9 1260 1278 27 0 0 chr12 88550927 88551074 -32706456 + B1_Mm SINE Alu 1 147 0 9 1260 14768 73 18 16 chr12 88551304 88554007 -32703523 - L1VL2 LINE L1 -626 2989 281 9 1260 243 348 113 0 chr12 88554163 88554278 -32703252 + B1_Mur2 SINE Alu 1 128 -21 9 1260 843 72 336 7 chr12 88554905 88555045 -32702485 + B2_Mm2 SINE B2 3 188 -7 9 1260 215 292 21 0 chr12 88555069 88555117 -32702413 + B1_Mus2 SINE Alu 2 50 -97 9 1260 1307 91 37 16 chr12 88555144 88555333 -32702197 + B2_Mm2 SINE B2 2 194 -1 1 1260 1248 85 56 11 chr12 88555543 88555721 -32701809 - B2_Mm2 SINE B2 -9 186 1 1 1260 353 246 52 17 chr12 88555801 88555917 -32701613 + RSINE1 SINE B4 2 121 -44 1 1260 396 0 0 0 chr12 88555936 88555980 -32701550 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1260 937 151 129 5 chr12 88556059 88556245 -32701285 + B3 SINE B2 2 210 -6 1 1260 1982 94 21 58 chr12 88556322 88556649 -32700881 - ORR1A2 LTR MaLR -12 315 1 1 1260 306 0 0 0 chr12 88556687 88556721 -32700809 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1260 713 98 96 16 chr12 88557425 88557550 -32699980 - B1_Mur4 SINE Alu 0 150 16 1 1260 1036 77 58 0 chr12 88557551 88557706 -32699824 + B2_Mm1t SINE B2 2 165 -28 1 1260 360 0 0 0 chr12 88557707 88557747 -32699783 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 1260 195 42 0 0 chr12 88557841 88557865 -32699665 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1260 438 36 0 0 chr12 88557985 88558041 -32699489 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1260 1205 52 4 17 chr12 88558044 88558280 -32699250 + (TTC)n Simple_repeat Simple_repeat 1 233 0 1 1260 318 50 0 0 chr12 88558287 88558327 -32699203 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1260 321 281 17 26 chr12 88558356 88558473 -32699057 + Lx8 LINE L1 7154 7269 -204 1 1260 236 254 0 0 chr12 88558478 88558537 -32698993 + RMER15 LTR ERVL 412 470 -105 1 1260 260 260 120 16 chr12 88558536 88558661 -32698869 - MER67C LTR ERV1 -70 641 504 1 1260 353 317 118 0 chr12 88558746 88558907 -32698623 - MER67C LTR ERV1 -419 292 113 1 1260 785 249 36 15 chr12 88558912 88559108 -32698422 - B3 SINE B2 -16 200 1 1 1260 585 259 161 0 chr12 88559113 88559275 -32698255 - B4 SINE B4 -65 227 40 1 1260 558 237 322 12 chr12 88559277 88559567 -32697963 - MTEb LTR MaLR -15 404 33 1 1260 431 262 10 0 chr12 88559840 88559943 -32697587 - ID_B1 SINE B4 0 224 121 1 1260 330 336 19 39 chr12 88560035 88560190 -32697340 - RSINE1 SINE B4 -6 159 8 1 1260 231 36 0 0 chr12 88560229 88560257 -32697273 + (ATG)n Simple_repeat Simple_repeat 2 29 0 1 1260 528 247 104 48 chr12 88560300 88560568 -32696962 - B4A SINE B4 -6 286 4 1 1260 682 129 62 0 chr12 88560797 88560926 -32696604 - B1_Mur3 SINE Alu -14 136 1 1 1260 26 0 0 49 chr12 88561187 88561202 -32696328 + AT_rich Low_complexity Low_complexity 1 14 0 1 1260 1214 61 0 0 chr12 88561202 88561349 -32696181 + B1_Mm SINE Alu 1 147 0 1 1260 26 0 0 49 chr12 88561349 88561374 -32696156 + AT_rich Low_complexity Low_complexity 1 25 0 1 1260 758 291 5 14 chr12 88561577 88561793 -32695737 - ID_B1 SINE B4 -5 219 6 1 1260 270 211 42 0 chr12 88562450 88562521 -32695009 + L1MCa LINE L1 1094 1167 -5341 1 1260 744 190 73 0 chr12 88562732 88562869 -32694661 + B1_Mur1 SINE Alu 1 147 -2 1 1260 317 336 29 0 chr12 88563020 88563157 -32694373 + HAL1 LINE L1 1506 1646 -861 1 1260 547 254 16 0 chr12 88563423 88563549 -32693981 + RSINE1 SINE B4 2 129 -36 1 1260 1391 69 21 11 chr12 88563593 88563783 -32693747 + B2_Mm2 SINE B2 3 194 -1 1 1260 930 145 0 20 chr12 88563793 88563941 -32693589 + B1_Mus1 SINE Alu 3 147 -1 1 1260 318 107 0 0 chr12 88564572 88564628 -32692902 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 1 1260 561 277 14 0 chr12 88564643 88564784 -32692746 - ID_B1 SINE B4 0 224 82 1 1260 498 46 0 0 chr12 88564946 88565011 -32692519 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1260 402 21 0 0 chr12 88565011 88565057 -32692473 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1260 252 0 0 0 chr12 88565482 88565510 -32692020 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1260 355 253 22 18 chr12 88566747 88566870 -32690660 - L1ME2 LINE L1 -261 6183 6059 1 1260 478 103 0 0 chr12 88566871 88566949 -32690581 - URR1B DNA MER1_type 0 225 148 1 1260 1189 43 0 0 chr12 88566952 88567093 -32690437 + B1_Mm SINE Alu 1 141 -6 1 1260 195 69 0 0 chr12 88567095 88567124 -32690406 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1260 879 109 7 35 chr12 88567155 88567298 -32690232 - B1_Mur4 SINE Alu 0 150 12 1 1260 775 186 70 0 chr12 88567290 88567446 -32690084 - URR1B DNA MER1_type -57 168 2 1 1260 339 232 121 0 chr12 88567451 88567550 -32689980 - L1ME2 LINE L1 -107 6057 5947 1 1260 445 47 348 35 chr12 88568104 88568216 -32689314 - B2_Mm2 SINE B2 -2 193 47 1 1260 1072 98 37 70 chr12 88568244 88568283 -32689247 - B2_Mm2 SINE B2 -14 181 153 1 1260 1453 79 11 0 chr12 88568283 88568473 -32689057 + B2_Mm1t SINE B2 2 193 0 1 1260 1072 98 37 70 chr12 88568473 88568620 -32688910 - B2_Mm2 SINE B2 -43 152 1 1 1260 1196 29 0 0 chr12 88568891 88569027 -32688503 + B1_Mm SINE Alu 2 137 -10 1 1260 459 217 50 0 chr12 88569433 88569537 -32687993 - PB1D10 SINE Alu 0 127 9 1 1260 1301 192 118 14 chr12 88569588 88569922 -32687608 - ORR1D1 LTR MaLR -12 347 3 1 1260 394 286 90 8 chr12 88569937 88570071 -32687459 - MTE2b LTR MaLR -72 307 163 1 1260 549 259 126 0 chr12 88570118 88570297 -32687233 - L1M3 LINE L1 -688 5468 5266 1 1260 853 134 21 0 chr12 88570325 88570467 -32687063 - B1_Mur4 SINE Alu 0 150 6 1 1260 662 273 122 11 chr12 88570486 88570749 -32686781 - L1M3 LINE L1 -1997 4143 3852 1 1260 920 256 147 64 chr12 88571082 88571490 -32686040 - MT2A LTR ERVL -8 525 84 1 1260 7029 93 22 17 chr12 88571844 88572848 -32684682 + Lx LINE L1 5646 6654 0 1 1260 408 240 35 5 chr12 88572874 88573021 -32684509 - L1M3 LINE L1 -2275 3871 3718 1 1260 266 84 17 57 chr12 88573039 88573098 -32684432 - B1_Mur4 SINE Alu -4 146 87 1 1260 251 127 4 1 chr12 88573105 88573146 -32684384 - L1M3 LINE L1 -2647 3499 3453 1 1260 236 30 30 0 chr12 88573146 88573179 -32684351 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1260 258 252 333 29 chr12 88573179 88573361 -32684169 - L1M3 LINE L1 -2688 3452 3210 1 1260 189 0 0 0 chr12 88573371 88573392 -32684138 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1260 688 127 9 9 chr12 88573425 88573536 -32683994 - B2_Mm2 SINE B2 -84 111 1 1 1260 1015 58 0 14 chr12 88573571 88573711 -32683819 - B1_Mm SINE Alu 0 147 10 1 1260 597 209 6 51 chr12 88573573 88573729 -32683801 - ID_B1 SINE B4 0 224 76 1 1260 1197 71 52 52 chr12 88574100 88574293 -32683237 + B2_Mm2 SINE B2 2 194 -1 1 1260 1218 48 0 7 chr12 88575208 88575356 -32682174 - B1_Mus1 SINE Alu 0 148 2 1 1260 232 272 113 28 chr12 88575594 88575700 -32681830 + RSINE1 SINE B4 43 157 -8 1 1260 254 284 40 0 chr12 88575888 88575962 -32681568 - ID4_ SINE ID -5 78 2 1 1260 364 186 0 55 chr12 88576073 88576122 -32681408 - L1MB5 LINE L1 -13 6161 6113 1 1260 1423 63 21 21 chr12 88576122 88576280 -32681250 + B2_Mm2 SINE B2 2 158 -37 1 1260 387 0 0 0 chr12 88576280 88576323 -32681207 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1260 1423 63 21 21 chr12 88576323 88576357 -32681173 + B2_Mm2 SINE B2 159 194 -1 1 1260 364 186 0 55 chr12 88576357 88576398 -32681132 - L1MB5 LINE L1 -62 6112 6077 1 1260 898 126 28 62 chr12 88576401 88576579 -32680951 - B2_Mm2 SINE B2 -5 190 19 1 1260 1836 95 82 0 chr12 88576562 88576856 -32680674 - ORR1A3 LTR MaLR -8 318 1 1 1260 458 256 52 23 chr12 88577740 88577912 -32679618 - L1MB5 LINE L1 -119 6055 5879 1 1260 862 292 155 9 chr12 88578084 88578419 -32679111 + MLT2F LTR ERVL 1 384 -279 1 1260 1792 148 46 16 chr12 88578433 88578812 -32678718 + MTC LTR MaLR 1 413 -8 1 1260 302 273 64 83 chr12 88578822 88579026 -32678504 + MLT2F LTR ERVL 442 641 -22 1 1260 442 282 51 8 chr12 88579180 88579298 -32678232 - RSINE1 SINE B4 -11 154 32 1 1260 301 224 307 0 chr12 88579335 88579462 -32678068 - MER20 DNA MER1_type -20 199 34 1 1260 498 265 29 7 chr12 88580887 88581024 -32676506 - B1F SINE Alu 0 149 10 1 1260 1053 249 83 0 chr12 88581043 88581296 -32676234 - B4 SINE B4 -14 278 5 1 1260 1137 81 0 26 chr12 88581812 88581964 -32675566 - B1_Mus1 SINE Alu 0 148 1 1 1260 300 128 0 21 chr12 88581966 88582014 -32675516 - B4 SINE B4 -66 226 180 1 1260 1481 63 16 0 chr12 88582477 88582668 -32674862 - B2_Mm2 SINE B2 -1 194 1 1 1260 310 158 0 0 chr12 88584189 88584246 -32673284 + L1M3 LINE L1 4640 4696 -1444 1 1260 456 171 27 0 chr12 88584391 88584502 -32673028 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 1260 36 23 0 0 chr12 88584552 88584595 -32672935 + AT_rich Low_complexity Low_complexity 1 43 0 1 1260 597 207 0 8 chr12 88584602 88584719 -32672811 + B3 SINE B2 1 116 -100 1 1260 208 53 53 0 chr12 88584741 88584779 -32672751 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1260 527 224 48 66 chr12 88584865 88585032 -32672498 + B3 SINE B2 1 164 -52 1 1260 197 157 0 56 chr12 88586083 88586137 -32671393 + T-rich Low_complexity Low_complexity 1 51 0 1 1260 288 77 0 0 chr12 88586197 88586236 -32671294 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1 1260 1033 230 10 0 chr12 88586238 88586438 -32671092 + B3 SINE B2 1 202 -14 1 1260 721 180 0 0 chr12 88586438 88586566 -32670964 + B1_Mur3 SINE Alu 21 148 -1 1 1260 1438 71 27 0 chr12 88586634 88586818 -32670712 + B2_Mm2 SINE B2 2 190 -5 1 1260 352 245 33 117 chr12 88587370 88587490 -32670040 + PB1D10 SINE Alu 7 116 -1 1 1260 208 256 0 0 chr12 88587492 88587535 -32669995 + GA-rich Low_complexity Low_complexity 2 44 0 1 1260 658 254 135 0 chr12 88588049 88588234 -32669296 + ID_B1 SINE B4 1 210 -14 1 1260 267 133 0 0 chr12 88588235 88588280 -32669250 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1260 40 0 0 0 chr12 88588515 88588555 -32668975 + AT_rich Low_complexity Low_complexity 1 40 0 1 1260 1415 42 0 0 chr12 88588557 88588722 -32668808 - L1Md_F3 LINE L1 -248 6336 6172 1 1260 1810 32 0 5 chr12 88588722 88588941 -32668589 + L1Md_F3 LINE L1 6366 6583 -1 1 1260 373 260 110 0 chr12 88589024 88589124 -32668406 + ID_B1 SINE B4 91 201 -23 1 1260 1204 77 112 0 chr12 88589481 88589650 -32667880 - B2_Mm2 SINE B2 -6 189 2 1 1260 702 207 27 22 chr12 88589883 88590052 -32667478 + B3 SINE B2 19 186 -9 1 1260 186 43 0 0 chr12 88590544 88590567 -32666963 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 1260 213 39 0 0 chr12 88590640 88590666 -32666864 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1260 189 0 0 0 chr12 88590666 88590686 -32666844 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1260 216 0 0 0 chr12 88590699 88590723 -32666807 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1260 762 228 61 6 chr12 88590807 88590988 -32666542 - B3A SINE B2 -6 192 2 2 1260 500 228 162 25 chr12 88590989 88591187 -32666343 - B4 SINE B4 -63 229 5 2 1260 242 323 48 6 chr12 88592343 88592499 -32665031 - MIRb SINE MIR -92 176 6 2 1260 1292 156 52 0 chr12 88592933 88593144 -32664386 - URR1A DNA MER1_type 0 226 5 2 1260 1094 66 7 7 chr12 88593169 88593321 -32664209 - B2_Mm2 SINE B2 -35 160 9 2 1260 195 42 0 0 chr12 88593453 88593477 -32664053 + (ATGTG)n Simple_repeat Simple_repeat 1 24 0 2 1260 429 310 78 16 chr12 88594439 88594682 -32662848 - L1ME1 LINE L1 -24 6155 5898 2 1260 285 215 82 31 chr12 88594677 88594828 -32662702 + L1MD LINE L1 4845 5003 -1143 2 1260 368 262 44 10 chr12 88594856 88594990 -32662540 - B1F SINE Alu -10 139 2 2 1260 1203 61 0 7 chr12 88595373 88595521 -32662009 + B1_Mus2 SINE Alu 1 147 0 2 1260 216 0 0 0 chr12 88595521 88595545 -32661985 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1260 388 191 11 11 chr12 88595581 88595676 -32661854 + CT-rich Low_complexity Low_complexity 2 96 0 2 1260 497 165 33 0 chr12 88595682 88595773 -32661757 - B1_Mur4 SINE Alu -7 143 50 2 1260 633 12 12 0 chr12 88595773 88595856 -32661674 + L1Md_F2 LINE L1 6499 6582 0 2 1260 344 222 16 0 chr12 88595878 88595941 -32661589 - B1_Mur4 SINE Alu -85 65 2 2 1260 283 259 48 36 chr12 88595941 88595962 -32661568 - B4 SINE B4 -143 149 65 2 1260 240 35 0 0 chr12 88596484 88596513 -32661017 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1260 295 243 80 9 chr12 88596522 88596634 -32660896 - B4A SINE B4 -8 284 165 2 1260 585 268 0 13 chr12 88597020 88597171 -32660359 + B1F SINE Alu 1 149 0 2 1260 428 266 0 11 chr12 88597181 88597276 -32660254 + RSINE1 SINE B4 37 130 -35 2 1260 447 35 0 0 chr12 88597293 88597350 -32660180 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1260 210 238 0 0 chr12 88597586 88597628 -32659902 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1260 268 258 225 72 chr12 88597629 88597721 -32659809 - RSINE1 SINE B4 -1 164 43 2 1260 1805 158 133 6 chr12 88597721 88598059 -32659471 + ORR1C2 LTR MaLR 4 384 0 2 1260 268 258 225 72 chr12 88598059 88598104 -32659426 - RSINE1 SINE B4 -123 42 6 2 1260 894 172 125 0 chr12 88598525 88598717 -32658813 + B3 SINE B2 1 216 0 2 1260 1241 284 126 29 chr12 88598776 88599093 -32658437 - L1MB4 LINE L1 -1 6179 5804 2 1260 1367 71 49 0 chr12 88599093 88599276 -32658254 + B2_Mm2 SINE B2 2 193 -2 2 1260 1241 284 126 29 chr12 88599276 88599570 -32657960 - L1MB4 LINE L1 -377 5803 5509 2 1260 1100 89 0 14 chr12 88599761 88599909 -32657621 + B1_Mus2 SINE Alu 1 146 -1 2 1260 363 44 0 0 chr12 88599958 88600003 -32657527 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 2 1260 35 24 0 0 chr12 88600394 88600436 -32657094 + AT_rich Low_complexity Low_complexity 1 42 0 2 1260 223 220 0 48 chr12 88600460 88600504 -32657026 + T-rich Low_complexity Low_complexity 16 59 0 2 1260 756 152 97 15 chr12 88600504 88600638 -32656892 - B1_Mur3 SINE Alu 0 149 5 2 1260 223 220 0 48 chr12 88600638 88600655 -32656875 + T-rich Low_complexity Low_complexity 1 15 0 2 1260 1685 26 5 0 chr12 88600723 88600915 -32656615 + B2_Mm1t SINE B2 1 193 0 2 1260 1152 76 7 0 chr12 88600928 88601073 -32656457 + B1_Mus2 SINE Alu 2 147 0 2 1260 917 110 0 20 chr12 88602102 88602251 -32655279 + B1_Mus1 SINE Alu 3 148 0 2 1260 317 264 28 0 chr12 88602258 88602330 -32655200 - MurSatRep1 Unknown Unknown -1839 298 225 2 1260 279 225 117 16 chr12 88602363 88602457 -32655073 + PB1D9 SINE Alu 5 106 -44 2 1260 234 0 0 0 chr12 88602496 88602522 -32655008 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1260 1815 159 46 26 chr12 88602547 88602896 -32654634 - MTC LTR MaLR 0 421 66 2 1260 433 275 114 8 chr12 88602898 88603030 -32654500 + RSINE1 SINE B4 18 163 -2 2 1260 1351 85 16 26 chr12 88603063 88603257 -32654273 + B2_Mm2 SINE B2 4 195 0 2 1260 413 212 39 39 chr12 88603271 88603374 -32654156 + ID_B1 SINE B4 122 224 0 2 1260 244 319 166 48 chr12 88603553 88603606 -32653924 - RSINE1 SINE B4 0 165 116 2 1260 1303 166 320 6 chr12 88603606 88603922 -32653608 + MTD LTR MaLR 2 416 -3 2 1260 244 319 166 48 chr12 88603922 88604013 -32653517 - RSINE1 SINE B4 -50 115 4 2 1260 294 335 70 49 chr12 88604017 88604202 -32653328 + ORR1E LTR MaLR 4 192 -167 2 1260 1144 68 7 0 chr12 88604319 88604466 -32653064 + B1_Mus1 SINE Alu 1 148 0 2 1260 193 29 29 29 chr12 88604469 88604504 -32653026 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1260 599 85 68 0 chr12 88604505 88604657 -32652873 + L1_Mus3 LINE L1 6501 6638 0 2 1261 216 307 49 10 chr12 88605331 88605433 -32652097 - L2a LINE L2 0 3426 3321 2 1261 419 244 0 0 chr12 88605979 88606061 -32651469 - ID4_ SINE ID -1 82 1 2 1261 317 296 73 48 chr12 88610210 88610416 -32647114 - Tigger9b DNA MER2_type -132 492 282 2 1261 538 242 112 40 chr12 88611594 88611844 -32645686 + MER33 DNA MER1_type 36 303 -21 2 1261 671 233 53 59 chr12 88612542 88612729 -32644801 - B3A SINE B2 -2 196 11 2 1261 183 164 0 47 chr12 88613114 88613178 -32644352 + CT-rich Low_complexity Low_complexity 3 63 0 2 1261 313 152 136 0 chr12 88613813 88613872 -32643658 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 2 1261 303 264 113 0 chr12 88613872 88613893 -32643637 + ID4 SINE ID 8 95 -57 2 1261 434 272 29 0 chr12 88615046 88615149 -32642381 + ID_B1 SINE B4 93 198 -26 2 1261 681 156 318 0 chr12 88615160 88615314 -32642216 + B3 SINE B2 3 205 -11 2 1261 216 0 0 0 chr12 88615650 88615674 -32641856 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 2 1261 455 198 9 73 chr12 88615674 88615777 -32641753 - PB1D10 SINE Alu -9 108 13 2 1261 183 189 54 0 chr12 88616718 88616755 -32640775 + MIR SINE MIR 122 160 -102 2 1261 265 305 43 95 chr12 88616783 88616899 -32640631 + B1_Mur1 SINE Alu 9 118 -31 2 1261 785 179 29 0 chr12 88616980 88617120 -32640410 + B1_Mur4 SINE Alu 2 145 -5 2 1261 1096 98 84 18 chr12 88617125 88617291 -32640239 + B2_Mm2 SINE B2 1 177 -18 2 1261 257 295 116 48 chr12 88617377 88617523 -32640007 - MER5A DNA MER1_type -27 162 7 2 1261 352 273 20 29 chr12 88618107 88618209 -32639321 + PB1 SINE Alu 11 111 -16 2 1261 427 221 75 68 chr12 88618164 88618310 -32639220 + MT2B LTR ERVL 132 278 -323 2 1261 1034 55 0 0 chr12 88618209 88618337 -32639193 + B1_Mus2 SINE Alu 20 147 0 2 1261 189 0 0 0 chr12 88618337 88618358 -32639172 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1261 292 303 0 0 chr12 88618418 88618484 -32639046 - ID4_ SINE ID -16 67 2 2 1261 780 119 17 8 chr12 88618876 88618995 -32638535 + PB1D9 SINE Alu 1 120 0 2 1261 948 158 220 0 chr12 88621334 88621511 -32636019 + B3 SINE B2 1 216 0 2 1261 27 0 0 0 chr12 88621511 88621538 -32635992 + AT_rich Low_complexity Low_complexity 1 27 0 2 1261 800 273 27 31 chr12 88621733 88621956 -32635574 - ID_B1 SINE B4 0 224 3 2 1261 778 220 119 16 chr12 88621989 88622174 -32635356 - B3 SINE B2 -11 205 2 2 1261 1214 49 0 0 chr12 88622212 88622354 -32635176 - B1_Mus1 SINE Alu -4 144 3 2 1261 200 122 24 0 chr12 88622535 88622576 -32634954 + (TTC)n Simple_repeat Simple_repeat 1 42 0 2 1261 685 194 7 41 chr12 88622576 88622735 -32634795 - B1_Mur3 SINE Alu 0 150 1 2 1261 360 240 27 0 chr12 88623836 88623911 -32633619 - MER91A DNA Tip100 -104 92 16 2 1261 220 278 83 49 chr12 88623911 88624028 -32633502 + MIRb SINE MIR 16 143 -125 2 1261 413 315 97 0 chr12 88624037 88624170 -32633360 + ID_B1 SINE B4 8 155 -69 2 1261 1474 58 15 36 chr12 88624171 88624366 -32633164 + B2_Mm2 SINE B2 2 192 -3 2 1261 500 200 0 9 chr12 88624367 88624483 -32633047 + GA-rich Low_complexity Low_complexity 2 116 0 2 1261 607 344 8 45 chr12 88625077 88625345 -32632185 - B4A SINE B4 -2 290 33 2 1261 207 0 0 0 chr12 88625395 88625418 -32632112 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1261 498 241 72 7 chr12 88625418 88625556 -32631974 - B1F1 SINE Alu 0 149 3 2 1261 404 269 21 56 chr12 88625556 88625698 -32631832 - MIR SINE MIR -61 201 65 2 1261 855 138 65 0 chr12 88626831 88626969 -32630561 + B1_Mur3 SINE Alu 1 147 -2 2 1261 585 0 0 0 chr12 88627071 88627136 -32630394 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1261 889 62 0 0 chr12 88627136 88627248 -32630282 - B1_Mus1 SINE Alu -32 116 5 2 1261 216 0 0 0 chr12 88627267 88627291 -32630239 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1261 378 0 0 0 chr12 88628571 88628613 -32628917 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1261 2229 121 34 63 chr12 88628844 88629225 -32628305 - ORR1C1 LTR MaLR 0 378 9 2 1261 378 0 0 0 chr12 88629642 88629684 -32627846 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1261 268 397 72 39 chr12 88629697 88629786 -32627744 - B4 SINE B4 0 292 198 2 1261 1153 101 0 0 chr12 88629786 88629935 -32627595 + B1_Mur4 SINE Alu 2 150 0 2 1261 268 397 72 39 chr12 88629935 88630052 -32627478 - B4 SINE B4 -95 197 80 2 1261 614 278 134 16 chr12 88630075 88630097 -32627433 - ID_B1 SINE B4 -52 240 199 3 1261 325 244 38 25 chr12 88630097 88630177 -32627353 - PB1D10 SINE Alu -2 115 35 3 1261 614 278 134 16 chr12 88630177 88630272 -32627258 - ID_B1 SINE B4 -52 198 7 3 1261 493 303 14 14 chr12 88630325 88630469 -32627061 - MIR SINE MIR -99 163 20 3 1261 709 200 180 16 chr12 88631668 88631851 -32625679 + B3 SINE B2 1 213 -3 3 1261 1026 67 0 0 chr12 88631863 88631998 -32625532 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 3 1261 211 321 35 47 chr12 88632159 88632244 -32625286 + MIRm SINE MIR 193 276 0 3 1261 231 324 0 0 chr12 88632374 88632445 -32625085 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1261 1035 104 7 0 chr12 88632742 88632886 -32624644 - B1_Mur4 SINE Alu 0 150 6 3 1261 625 257 18 4 chr12 88633002 88633166 -32624364 + B3A SINE B2 48 214 -2 3 1261 1304 20 0 0 chr12 88633171 88633318 -32624212 + B1_Mm SINE Alu 1 147 0 3 1261 204 40 0 0 chr12 88633318 88633343 -32624187 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1261 1149 100 65 0 chr12 88633352 88633522 -32624008 + B2_Mm2 SINE B2 1 181 -14 3 1261 3008 71 18 18 chr12 88633555 88633955 -32623575 - MTB LTR MaLR 0 400 1 3 1261 452 248 0 117 chr12 88633956 88634084 -32623446 + PB1D10 SINE Alu 4 116 -1 3 1261 351 65 0 0 chr12 88634108 88634154 -32623376 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 3 1261 1632 42 0 0 chr12 88634155 88634346 -32623184 - B2_Mm1a SINE B2 -2 191 1 3 1261 1236 62 88 33 chr12 88634347 88634529 -32623001 - B2_Mm2 SINE B2 -2 193 2 3 1261 360 0 0 0 chr12 88634645 88634685 -32622845 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1261 279 0 0 0 chr12 88634685 88634715 -32622815 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1261 1222 48 0 0 chr12 88635515 88635660 -32621870 - B1_Mus1 SINE Alu -2 146 2 3 1261 678 178 127 0 chr12 88635683 88635801 -32621729 - B1_Mus1 SINE Alu -14 134 2 3 1261 323 244 0 37 chr12 88635812 88635893 -32621637 - ID4_ SINE ID -1 82 5 3 1261 189 107 0 0 chr12 88636229 88636257 -32621273 + (TCCCC)n Simple_repeat Simple_repeat 2 29 0 3 1261 719 232 22 0 chr12 88637018 88637156 -32620374 + B1F SINE Alu 1 141 -8 3 1261 203 0 37 0 chr12 88637164 88637191 -32620339 + (CCCCCA)n Simple_repeat Simple_repeat 1 28 0 3 1261 335 258 55 22 chr12 88637386 88637477 -32620053 - PB1D10 SINE Alu 0 117 24 3 1261 22 56 0 0 chr12 88637640 88637676 -32619854 + AT_rich Low_complexity Low_complexity 1 36 0 3 1261 1347 72 39 0 chr12 88637678 88637858 -32619672 - B2_Mm2 SINE B2 -7 188 2 3 1261 320 224 134 0 chr12 88637874 88637941 -32619589 - B1_Mur4 SINE Alu -73 77 2 3 1261 599 283 43 0 chr12 88637953 88638091 -32619439 - B1F2 SINE Alu -5 144 1 3 1261 1156 65 0 0 chr12 88638109 88638248 -32619282 - B1_Mus1 SINE Alu -8 140 2 3 1261 626 231 0 0 chr12 88638380 88638497 -32619033 - PB1D9 SINE Alu -3 117 1 3 1261 243 0 0 0 chr12 88638682 88638709 -32618821 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1261 993 52 0 81 chr12 88638726 88638874 -32618656 - B1_Mm SINE Alu -1 146 11 3 1261 439 250 21 0 chr12 88638872 88638968 -32618562 - ID_B1 SINE B4 -41 183 86 3 1261 198 0 0 0 chr12 88639082 88639104 -32618426 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1261 336 293 75 33 chr12 88639108 88639228 -32618302 - B1F SINE Alu -5 144 20 3 1261 1186 70 0 0 chr12 88639722 88639865 -32617665 + B1_Mus1 SINE Alu 1 143 -5 3 1261 188 111 0 27 chr12 88641708 88641745 -32615785 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 3 1261 1120 97 96 12 chr12 88641980 88642147 -32615383 - B2_Mm2 SINE B2 -14 181 1 3 1261 225 0 0 0 chr12 88642268 88642293 -32615237 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 3 1261 603 258 29 121 chr12 88642517 88642617 -32614913 + B3 SINE B2 1 82 -134 3 1261 523 207 0 51 chr12 88642617 88642734 -32614796 - PB1D9 SINE Alu -7 113 3 3 1261 1337 202 148 6 chr12 88642741 88643065 -32614465 + ORR1D1 LTR MaLR 5 374 0 3 1261 603 258 29 121 chr12 88643065 88643163 -32614367 + B3 SINE B2 91 187 -29 3 1261 624 256 43 14 chr12 88643237 88643376 -32614154 + RSINE1 SINE B4 3 145 -20 3 1261 365 276 103 86 chr12 88643474 88643708 -32613822 + LTR37A LTR ERV1 1 238 -188 3 1261 186 43 0 0 chr12 88643778 88643801 -32613729 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 3 1261 375 117 12 33 chr12 88643809 88643882 -32613648 - B2_Mm2 SINE B2 -95 121 47 3 1261 894 113 205 0 chr12 88643950 88644101 -32613429 - B2_Mm2 SINE B2 -13 182 1 3 1261 912 174 0 0 chr12 88644157 88644295 -32613235 + B1_Mus1 SINE Alu 5 142 -6 3 1261 840 187 157 16 chr12 88644308 88644493 -32613037 - B3 SINE B2 -3 213 3 3 1261 1254 41 0 0 chr12 88644540 88644687 -32612843 - B1_Mus1 SINE Alu 0 148 2 3 1261 328 300 426 18 chr12 88644744 88644906 -32612624 - B4A SINE B4 -64 228 1 3 1261 235 314 195 15 chr12 88644911 88645244 -32612286 - L1M5 LINE L1 -1127 5019 4627 3 1261 467 304 79 7 chr12 88645278 88645417 -32612113 + RSINE1 SINE B4 5 153 -12 3 1261 1249 68 0 0 chr12 88645460 88645607 -32611923 + B1_Mus2 SINE Alu 1 147 0 3 1261 182 340 94 21 chr12 88645903 88645999 -32611531 + L2b LINE L2 3272 3374 -1 3 1261 225 65 0 0 chr12 88646148 88646179 -32611351 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 3 1261 258 266 146 21 chr12 88647730 88647826 -32609704 - PB1D7 SINE Alu 0 120 13 3 1261 268 268 39 14 chr12 88647750 88647838 -32609692 - MT2B LTR ERVL -350 251 162 3 1261 706 212 309 0 chr12 88648323 88648488 -32609042 - B3 SINE B2 0 216 1 3 1261 523 198 42 0 chr12 88649263 88649359 -32608171 - PB1D9 SINE Alu -19 101 2 3 1261 423 291 65 29 chr12 88651267 88651405 -32606125 + RSINE1 SINE B4 23 165 0 3 1261 373 248 31 3 chr12 88651544 88651634 -32605896 - PB1D10 SINE Alu -34 83 1 3 1261 299 173 112 28 chr12 88651954 88652061 -32605469 + Lx9 LINE L1 7523 7638 -6 3 1261 426 289 8 50 chr12 88652281 88652401 -32605129 - PB1D10 SINE Alu 0 117 3 3 1261 330 26 0 0 chr12 88652413 88652452 -32605078 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1261 1080 122 0 0 chr12 88652482 88652630 -32604900 - B1_Mus1 SINE Alu 0 148 1 3 1261 842 196 7 26 chr12 88652712 88652864 -32604666 + B1_Mur2 SINE Alu 1 149 0 3 1261 270 231 43 61 chr12 88652956 88653053 -32604477 + B1_Mur4 SINE Alu 17 117 -3 3 1261 367 262 143 0 chr12 88653323 88653449 -32604081 + B1F1 SINE Alu 3 146 -3 3 1261 375 194 369 0 chr12 88653812 88653915 -32603615 + B1_Mus2 SINE Alu 7 147 0 3 1261 1435 58 37 5 chr12 88654495 88654684 -32602846 - B2_Mm2 SINE B2 0 195 1 3 1261 24 0 0 0 chr12 88654731 88654755 -32602775 + AT_rich Low_complexity Low_complexity 1 24 0 3 1261 411 206 75 47 chr12 88654767 88654874 -32602656 + PB1D9 SINE Alu 4 113 -7 3 1261 382 336 9 0 chr12 88655221 88655331 -32602199 - PB1D10 SINE Alu -2 115 5 3 1261 376 256 35 11 chr12 88655418 88655505 -32602025 - ID SINE ID -135 89 1 3 1261 232 239 0 0 chr12 88655556 88655602 -32601928 + ID4 SINE ID 2 47 -36 3 1261 1333 90 17 0 chr12 88655634 88655811 -32601719 - B2_Mm2 SINE B2 -14 181 2 3 1261 305 256 78 0 chr12 88656193 88656283 -32601247 - PB1D9 SINE Alu 0 120 24 3 1261 246 32 0 0 chr12 88656902 88656933 -32600597 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 3 1261 1507 45 6 0 chr12 88656933 88657109 -32600421 - B2_Mm1t SINE B2 -16 177 1 3 1261 252 122 0 75 chr12 88657109 88657162 -32600368 - ORR1C2 LTR MaLR -6 388 340 3 1261 572 165 0 0 chr12 88657193 88657278 -32600252 - B1_Mur4 SINE Alu -47 103 19 3 1261 1458 148 114 24 chr12 88657280 88657577 -32599953 - ORR1C2 LTR MaLR -56 328 5 3 1261 266 263 132 0 chr12 88657599 88657675 -32599855 - ID_B1 SINE B4 -52 172 87 3 1261 244 294 158 18 chr12 88657717 88657939 -32599591 + L1MEc LINE L1 15 267 -6133 3 1261 744 308 163 44 chr12 88658041 88658242 -32599288 + L1MEc LINE L1 440 650 -5750 3 1261 711 179 21 35 chr12 88658242 88658387 -32599143 + B1_Mus2 SINE Alu 5 147 0 3 1261 744 308 163 44 chr12 88658387 88658681 -32598849 + L1MEc LINE L1 651 994 -5406 3 1261 244 286 0 49 chr12 88658689 88658770 -32598760 + PB1D10 SINE Alu 41 117 0 3 1261 1193 196 88 72 chr12 88658991 88659382 -32598148 + RMER16 LTR ERVK 1 533 0 3 1261 299 320 39 32 chr12 88659385 88659540 -32597990 + L1ME1 LINE L1 6014 6169 -10 3 1261 1278 85 23 0 chr12 88659545 88659721 -32597809 + B2_Mm1t SINE B2 1 180 -13 3 1261 319 96 355 10 chr12 88659756 88659866 -32597664 + B2_Mm2 SINE B2 45 192 -3 3 1261 536 291 28 14 chr12 88659970 88660113 -32597417 + ORR1E LTR MaLR 1 145 -214 3 1261 657 85 33 66 chr12 88660100 88660251 -32597279 + RMER17B LTR ERVK 286 431 -527 3 1261 235 169 271 0 chr12 88660279 88660338 -32597192 - B1F SINE Alu -5 144 70 3 1261 405 240 39 20 chr12 88660356 88660458 -32597072 - B1F SINE Alu -23 126 23 3 1261 766 250 25 25 chr12 88660767 88660964 -32596566 + B3A SINE B2 1 197 -1 3 1261 210 118 0 0 chr12 88661160 88661194 -32596336 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 3 1261 246 175 30 200 chr12 88661346 88661446 -32596084 - ID4_ SINE ID 0 83 1 3 1261 218 234 0 0 chr12 88661517 88661564 -32595966 - RSINE1 SINE B4 -35 130 84 3 1261 808 142 90 0 chr12 88661903 88662037 -32595493 + B1_Mus1 SINE Alu 2 147 -1 4 1261 189 0 0 0 chr12 88662242 88662263 -32595267 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1261 832 43 93 17 chr12 88662263 88662381 -32595149 - B1_Mm SINE Alu 0 147 21 4 1261 414 237 76 42 chr12 88662309 88662428 -32595102 - MT2B LTR ERVL -344 257 135 4 1261 387 244 173 124 chr12 88662422 88662472 -32595058 + B4A SINE B4 40 149 -143 4 1261 410 234 71 45 chr12 88662472 88662584 -32594946 + PB1D9 SINE Alu 6 120 0 4 1261 387 244 173 124 chr12 88662584 88662631 -32594899 + B4A SINE B4 150 258 -34 4 1261 329 299 10 10 chr12 88663916 88664014 -32593516 + PB1D10 SINE Alu 1 98 -19 4 1261 584 232 30 44 chr12 88664117 88664252 -32593278 + RSINE1 SINE B4 2 134 -31 4 1261 842 276 43 32 chr12 88664279 88664560 -32592970 + RLTR12B LTR ERVK 47 330 -198 4 1261 866 248 61 23 chr12 88664542 88664806 -32592724 + RLTR12B LTR ERVK 246 519 -9 4 1261 346 276 78 125 chr12 88665353 88665539 -32591991 + MTE2a LTR MaLR 154 359 -20 4 1261 912 81 73 7 chr12 88665621 88665758 -32591772 - B1_Mur4 SINE Alu 0 150 5 4 1261 435 316 97 56 chr12 88666105 88666249 -32591281 + RSINE1 SINE B4 16 165 0 4 1261 845 230 126 0 chr12 88666277 88666468 -32591062 + B3 SINE B2 1 215 -1 4 1261 275 309 124 0 chr12 88666628 88666725 -32590805 - RSINE1 SINE B4 -1 164 56 4 1261 560 265 13 26 chr12 88667126 88667281 -32590249 + B4A SINE B4 1 153 -139 4 1261 442 241 170 47 chr12 88667295 88667548 -32589982 + B4A SINE B4 3 286 -6 4 1261 327 233 0 0 chr12 88669057 88669117 -32588413 - ID4_ SINE ID -22 61 2 4 1261 227 200 80 0 chr12 88669888 88669938 -32587592 - PB1D10 SINE Alu -12 105 52 4 1261 332 307 166 46 chr12 88670130 88670506 -32587024 + MER31A LTR ERV1 1 464 -21 4 1261 272 305 12 0 chr12 88670506 88670588 -32586942 + ID4_ SINE ID 1 83 0 4 1261 332 303 216 43 chr12 88670588 88670601 -32586929 + MER31A LTR ERV1 465 482 -3 4 1261 24 67 0 0 chr12 88673451 88673496 -32584034 + AT_rich Low_complexity Low_complexity 1 45 0 4 1261 486 284 43 0 chr12 88673572 88673713 -32583817 - B1F1 SINE Alu -2 147 1 4 1261 286 169 32 48 chr12 88674441 88674503 -32583027 - B1_Mur4 SINE Alu -2 148 88 4 1261 309 230 135 0 chr12 88674513 88674587 -32582943 - MLT1G3 LTR MaLR -69 526 443 4 1261 685 136 0 0 chr12 88674574 88674677 -32582853 - B1_Mur4 SINE Alu -42 108 6 4 1261 561 247 127 39 chr12 88674898 88675079 -32582451 + MLT1G3 LTR MaLR 373 569 -26 4 1261 428 0 19 0 chr12 88675795 88675847 -32581683 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 4 1261 304 295 219 0 chr12 88675849 88675954 -32581576 - ID_B1 SINE B4 -11 213 86 4 1261 1564 74 0 0 chr12 88676344 88676533 -32580997 + B2_Mm1t SINE B2 2 190 -3 4 1261 24 0 0 0 chr12 88676533 88676557 -32580973 + AT_rich Low_complexity Low_complexity 1 24 0 4 1261 562 221 133 8 chr12 88676580 88676708 -32580822 + B1_Mur2 SINE Alu 4 147 -2 4 1261 496 95 0 23 chr12 88676708 88676794 -32580736 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 4 1261 1226 82 0 0 chr12 88677343 88677490 -32580040 - B1_Mus1 SINE Alu 0 148 2 4 1261 362 297 31 71 chr12 88677696 88677742 -32579788 + B1F1 SINE Alu 5 50 -99 4 1261 3520 35 17 12 chr12 88677742 88678151 -32579379 + IAPLTR2a LTR ERVK 1 411 0 4 1261 362 297 31 71 chr12 88678151 88678202 -32579328 + B1F1 SINE Alu 51 98 -51 4 1261 308 272 62 0 chr12 88678526 88678607 -32578923 + RMER15 LTR ERVL 490 575 0 4 1261 279 262 106 10 chr12 88679164 88679268 -32578262 + PB1D10 SINE Alu 2 115 -2 4 1261 213 196 0 0 chr12 88679767 88679806 -32577724 + T-rich Low_complexity Low_complexity 13 51 0 4 1261 1276 68 0 0 chr12 88679806 88679953 -32577577 - B1_Mus2 SINE Alu 0 147 1 4 1261 523 69 0 44 chr12 88679953 88679970 -32577560 - L1Md_F2 LINE L1 0 6582 6577 4 1261 1277 34 7 20 chr12 88679970 88680119 -32577411 - B1_Mm SINE Alu 0 147 1 4 1261 523 69 0 44 chr12 88680119 88680203 -32577327 - L1Md_F2 LINE L1 -6 6576 6496 4 1261 1489 143 19 0 chr12 88680259 88680515 -32577015 + L1_Mus4 LINE L1 6128 6419 -219 4 1261 487 103 11 2 chr12 88680715 88680796 -32576734 + B1_Mus1 SINE Alu 8 92 -55 4 1261 333 309 0 0 chr12 88681282 88681363 -32576167 - ID4_ SINE ID -1 82 2 4 1261 794 255 28 117 chr12 88681379 88681517 -32576013 - L1MB7 LINE L1 0 6184 6052 4 1261 953 89 81 0 chr12 88681517 88681640 -32575890 + B1_Mus1 SINE Alu 3 135 -13 4 1261 794 255 28 117 chr12 88681640 88681825 -32575705 - L1MB7 LINE L1 -133 6051 5890 4 1261 209 33 33 0 chr12 88682722 88682752 -32574778 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1261 344 259 12 12 chr12 88682907 88682989 -32574541 - ID4_ SINE ID 0 83 2 4 1261 330 158 35 0 chr12 88683089 88683146 -32574384 + MTD LTR MaLR 361 419 0 4 1261 243 252 304 9 chr12 88683173 88683192 -32574338 + ID_B1 SINE B4 79 223 -1 4 1261 273 261 75 11 chr12 88683192 88683285 -32574245 + PB1D10 SINE Alu 19 117 0 4 1261 314 311 3 14 chr12 88683299 88683402 -32574128 - ID4 SINE ID -47 105 6 4 1261 310 301 61 9 chr12 88684103 88684217 -32573313 + B2_Mm2 SINE B2 1 120 -75 4 1261 21 0 0 0 chr12 88684523 88684544 -32572986 + AT_rich Low_complexity Low_complexity 1 21 0 4 1261 203 161 0 0 chr12 88685188 88685219 -32572311 + polypyrimidine Low_complexity Low_complexity 1 31 0 4 1261 1195 70 0 0 chr12 88685221 88685363 -32572167 - B1_Mus1 SINE Alu -6 142 1 4 1261 237 341 12 0 chr12 88685909 88685994 -32571536 + (TATG)n Simple_repeat Simple_repeat 3 88 0 4 1261 1978 80 91 0 chr12 88686039 88686326 -32571204 - ORR1A3 LTR MaLR -8 318 6 4 1261 726 270 125 0 chr12 88686332 88686532 -32570998 - B4A SINE B4 -62 230 6 4 1261 799 266 31 5 chr12 88686561 88686754 -32570776 - B3A SINE B2 0 198 1 4 1261 465 246 76 8 chr12 88686780 88686899 -32570631 - RSINE1 SINE B4 -37 128 2 4 1261 189 107 0 0 chr12 88686909 88686937 -32570593 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 4 1261 323 347 0 0 chr12 88687185 88687260 -32570270 - PB1D10 SINE Alu -33 84 10 4 1261 804 169 254 6 chr12 88687283 88687456 -32570074 - B3 SINE B2 0 216 1 4 1261 186 43 0 0 chr12 88688221 88688244 -32569286 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1261 236 289 77 26 chr12 88688283 88688361 -32569169 + ID4 SINE ID 1 82 -1 4 1261 694 279 163 42 chr12 88688412 88688462 -32569068 + L1MC4a LINE L1 6941 6989 -893 4 1261 734 183 21 14 chr12 88688462 88688606 -32568924 + B1_Mus2 SINE Alu 1 145 -2 4 1261 1040 125 113 0 chr12 88688610 88688778 -32568752 - B2_Mm2 SINE B2 -6 189 3 4 1261 694 279 163 42 chr12 88688778 88689538 -32567992 + L1MC4a LINE L1 6990 7847 -35 4 1261 824 144 177 24 chr12 88689540 88689704 -32567826 - B2_Mm2 SINE B2 -5 190 2 4 1261 300 326 11 0 chr12 88689862 88689951 -32567579 - ID4_ SINE ID -51 101 12 4 1261 262 337 44 78 chr12 88690015 88690105 -32567425 - PB1 SINE Alu -34 93 7 4 1261 567 0 0 0 chr12 88690509 88690572 -32566958 + (GAGAA)n Simple_repeat Simple_repeat 4 66 0 4 1261 1198 81 0 0 chr12 88690789 88690937 -32566593 - B1_Mus1 SINE Alu 0 148 1 4 1261 562 217 171 14 chr12 88691414 88691554 -32565976 + RSINE1 SINE B4 4 165 0 4 1261 306 0 0 0 chr12 88691605 88691639 -32565891 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1261 212 273 52 0 chr12 88691782 88691859 -32565671 + ID4_ SINE ID 3 83 0 4 1261 245 311 47 86 chr12 88691882 88692114 -32565416 + MLT1B LTR MaLR 91 313 -77 4 1261 316 231 167 0 chr12 88692339 88692417 -32565113 + PB1D10 SINE Alu 2 92 -25 4 1261 287 282 165 0 chr12 88692417 88692434 -32565096 + ID_B1 SINE B4 108 194 -30 4 1261 842 270 119 58 chr12 88692490 88692919 -32564611 + L1MB7 LINE L1 5536 5990 -194 4 1261 274 86 0 0 chr12 88692952 88692987 -32564543 - B1_Mus1 SINE Alu -113 35 1 4 1261 637 54 31 41 chr12 88693473 88693570 -32563960 + B2_Mm2 SINE B2 98 193 -2 4 1261 1200 48 7 46 chr12 88693804 88693957 -32563573 + B1_Mus1 SINE Alu 1 147 -1 4 1261 198 0 0 0 chr12 88693958 88693980 -32563550 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 4 1261 851 177 13 39 chr12 88694957 88695110 -32562420 + B1_Mur2 SINE Alu 1 149 0 4 1261 212 244 0 0 chr12 88695112 88695157 -32562373 + GA-rich Low_complexity Low_complexity 3 47 0 4 1261 307 284 27 18 chr12 88695589 88695700 -32561830 + MLT1H1 LTR MaLR 1 112 -443 4 1261 373 148 0 0 chr12 88697044 88697098 -32560432 - B2_Mm2 SINE B2 -139 56 3 4 1261 862 157 0 41 chr12 88697098 88697241 -32560289 + B1_Mm SINE Alu 10 146 -1 4 1261 234 215 119 30 chr12 88697279 88697346 -32560184 + ID4 SINE ID 1 73 -10 4 1261 324 278 97 65 chr12 88698198 88698352 -32559178 + B3A SINE B2 40 198 0 4 1261 456 172 65 0 chr12 88698370 88698463 -32559067 + B1_Mur2 SINE Alu 50 148 -1 4 1261 455 289 24 54 chr12 88699034 88699202 -32558328 - RSINE1 SINE B4 0 165 3 4 1261 278 303 32 110 chr12 88699889 88700108 -32557422 + RLTR11B LTR ERVK 85 286 -167 4 1261 339 241 65 65 chr12 88700118 88700273 -32557257 + BGLII_B LTR ERVK 259 413 -28 4 1261 511 226 9 19 chr12 88701069 88701177 -32556353 + B1_Mur2 SINE Alu 43 149 0 4 1261 788 193 20 33 chr12 88701188 88701338 -32556192 + B1_Mur3 SINE Alu 2 149 0 4 1261 659 249 166 11 chr12 88701359 88701534 -32555996 + B3 SINE B2 15 216 0 4 1261 25 0 0 0 chr12 88701536 88701561 -32555969 + AT_rich Low_complexity Low_complexity 1 25 0 4 1261 247 252 205 6 chr12 88701816 88701972 -32555558 + L1M4 LINE L1 5618 5804 -370 4 1261 410 226 89 73 chr12 88702271 88702407 -32555123 + B3A SINE B2 81 216 0 5 1261 22 80 0 0 chr12 88702691 88702741 -32554789 + AT_rich Low_complexity Low_complexity 1 50 0 5 1261 1539 123 219 18 chr12 88702778 88703052 -32554478 + ORR1A4 LTR MaLR 1 329 0 5 1261 531 186 128 0 chr12 88703201 88703303 -32554227 + B1_Mus2 SINE Alu 2 116 -31 5 1261 287 226 0 0 chr12 88703589 88703642 -32553888 + B3A SINE B2 1 53 -145 5 1261 363 307 68 58 chr12 88703836 88704026 -32553504 - L2 LINE L2 -1321 2098 1907 5 1261 302 258 169 32 chr12 88704481 88704605 -32552925 + B1_Mur2 SINE Alu 1 141 -8 5 1261 834 184 240 0 chr12 88704646 88704825 -32552705 - URR1A DNA MER1_type 0 226 5 5 1261 3006 39 45 6 chr12 88704935 88705292 -32552238 + L1Md_F2 LINE L1 6212 6582 0 5 1261 355 160 191 0 chr12 88705473 88705567 -32551963 - Lx9 LINE L1 -2 7642 7531 5 1261 613 153 36 139 chr12 88705722 88705859 -32551671 - B1_Mur3 SINE Alu -8 141 19 5 1261 733 230 40 46 chr12 88707052 88707225 -32550305 - B3 SINE B2 0 216 45 5 1261 495 259 18 9 chr12 88707208 88707321 -32550209 - B1_Mus2 SINE Alu -32 115 2 5 1261 407 240 68 29 chr12 88707475 88707578 -32549952 - B3 SINE B2 -5 211 105 5 1261 511 133 194 28 chr12 88707559 88707667 -32549863 + B1_Mm SINE Alu 21 146 -1 5 1261 932 157 83 11 chr12 88707669 88707849 -32549681 + B2_Mm2 SINE B2 2 194 -1 5 1261 207 184 41 0 chr12 88707889 88707938 -32549592 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 5 1261 455 176 142 44 chr12 88707955 88708068 -32549462 - B3 SINE B2 -92 124 1 5 1261 281 288 10 46 chr12 88708153 88708268 -32549262 - B1F SINE Alu -14 106 4 5 1261 626 262 28 0 chr12 88708284 88708429 -32549101 - B1F SINE Alu 0 149 1 5 1261 184 200 36 0 chr12 88708659 88708714 -32548816 + GA-rich Low_complexity Low_complexity 2 58 0 5 1261 779 217 28 0 chr12 88709322 88709465 -32548065 + B1_Mus1 SINE Alu 2 148 0 5 1261 479 200 69 20 chr12 88709503 88709605 -32547925 - B3 SINE B2 -109 107 1 5 1261 401 194 0 0 chr12 88709698 88709765 -32547765 - PB1D7 SINE Alu -7 113 47 5 1261 512 281 0 95 chr12 88710546 88710715 -32546815 + RSINE1 SINE B4 11 163 -2 5 1261 29 0 0 0 chr12 88710966 88710995 -32546535 + AT_rich Low_complexity Low_complexity 1 29 0 5 1261 909 170 13 13 chr12 88711004 88711153 -32546377 + B1_Mur4 SINE Alu 1 149 -1 5 1261 299 363 22 0 chr12 88711289 88711380 -32546150 - PB1D10 SINE Alu -12 105 13 5 1261 902 155 0 57 chr12 88711434 88711591 -32545939 + B1_Mur4 SINE Alu 3 150 0 5 1261 1058 249 41 96 chr12 88712117 88712553 -32544977 + BGLII_B LTR ERVK 1 412 -29 5 1261 484 239 11 0 chr12 88712689 88712781 -32544749 + B4A SINE B4 112 204 -88 5 1261 246 346 18 55 chr12 88712781 88712799 -32544731 + B1F2 SINE Alu 27 132 -17 5 1261 1186 35 20 20 chr12 88713318 88713466 -32544064 + B1_Mus1 SINE Alu 1 148 0 5 1261 307 272 24 24 chr12 88713488 88713571 -32543959 + B4A SINE B4 202 284 -8 5 1261 381 295 96 196 chr12 88713804 88713895 -32543635 - B4 SINE B4 -12 280 87 5 1261 498 256 136 0 chr12 88713895 88714020 -32543510 - B1_Mur1 SINE Alu -6 143 2 5 1261 835 262 11 16 chr12 88714020 88714204 -32543326 - B4 SINE B4 -61 231 49 5 1261 29 0 0 0 chr12 88714355 88714384 -32543146 + AT_rich Low_complexity Low_complexity 1 29 0 5 1261 812 184 21 28 chr12 88714702 88714847 -32542683 - B1_Mur4 SINE Alu -6 144 1 5 1261 251 93 0 23 chr12 88715078 88715122 -32542408 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 5 1261 578 276 12 49 chr12 88715551 88715715 -32541815 + ID_B1 SINE B4 66 223 -1 5 1261 721 0 22 0 chr12 88715950 88716039 -32541491 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1261 231 103 0 0 chr12 88716061 88716100 -32541430 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1261 397 219 47 0 chr12 88716125 88716218 -32541312 - PB1D9 SINE Alu 0 150 47 5 1261 265 258 16 0 chr12 88716254 88716316 -32541214 - RMER30 DNA MER1_type -134 68 6 5 1261 386 316 45 8 chr12 88716467 88716601 -32540929 + ID_B1 SINE B4 86 224 0 5 1261 582 274 134 22 chr12 88716702 88716881 -32540649 - B3 SINE B2 -17 199 1 5 1261 402 259 0 0 chr12 88716918 88717034 -32540496 + (TA)n Simple_repeat Simple_repeat 1 116 0 5 1261 207 161 0 0 chr12 88717037 88717068 -32540462 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1261 1393 179 0 0 chr12 88717142 88717349 -32540181 - B3 SINE B2 -9 207 1 5 1261 261 0 0 0 chr12 88717597 88717626 -32539904 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1261 286 154 132 5 chr12 88717752 88717822 -32539708 - RMER1A Other Other -915 115 49 5 1261 728 236 58 19 chr12 88717838 88718050 -32539480 + RMER1B Other Other 264 536 -530 5 1261 409 159 0 0 chr12 88718054 88718117 -32539413 + ORR1C2 LTR MaLR 318 380 -4 5 1261 1134 225 30 56 chr12 88718397 88718665 -32538865 - B4A SINE B4 -30 262 2 5 1261 627 293 5 91 chr12 88718697 88718907 -32538623 + B3A SINE B2 2 193 -5 5 1261 674 184 97 62 chr12 88718911 88719056 -32538474 + B1_Mur4 SINE Alu 1 150 0 5 1261 878 156 98 18 chr12 88719059 88719201 -32538329 + B2_Mm2 SINE B2 1 154 -41 5 1261 351 0 0 0 chr12 88719201 88719240 -32538290 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 5 1261 878 156 98 18 chr12 88719240 88719260 -32538270 + B2_Mm2 SINE B2 155 176 -19 5 1261 664 224 7 56 chr12 88719263 88719405 -32538125 + B3 SINE B2 2 136 -80 5 1261 851 255 17 96 chr12 88719730 88719785 -32537745 - ID_B1 SINE B4 -11 213 168 5 1261 1270 99 54 11 chr12 88719785 88719969 -32537561 + B2_Mm2 SINE B2 2 193 -2 5 1261 851 255 17 96 chr12 88719969 88720143 -32537387 - ID_B1 SINE B4 -57 167 2 5 1261 235 320 62 23 chr12 88720313 88720441 -32537089 - L1M3 LINE L1 -1168 4972 4840 5 1261 923 237 5 0 chr12 88720615 88720809 -32536721 - MTD LTR MaLR -204 215 21 5 1261 1465 80 5 16 chr12 88721079 88721270 -32536260 + B2_Mm1a SINE B2 3 191 -2 5 1261 722 217 16 0 chr12 88721379 88721508 -32536022 + B1_Mur4 SINE Alu 2 132 -18 5 1261 533 309 130 23 chr12 88721862 88722170 -32535360 + ORR1E LTR MaLR 18 358 -1 5 1261 610 293 158 48 chr12 88722893 88723291 -32534239 - Lx8 LINE L1 -6 7467 7026 5 1261 516 239 165 31 chr12 88723336 88723530 -32534000 - ID_B1 SINE B4 -3 221 2 5 1261 272 299 0 0 chr12 88723930 88723997 -32533533 + B4 SINE B4 2 68 -224 5 1261 323 330 91 0 chr12 88724001 88724089 -32533441 + ID_B1 SINE B4 87 182 -42 5 1261 315 316 81 40 chr12 88724089 88724100 -32533430 + PB1D10 SINE Alu 6 108 -9 5 1261 258 239 30 80 chr12 88724103 88724203 -32533327 + L1MA6 LINE L1 6157 6251 -49 5 1261 1645 31 0 5 chr12 88724328 88724521 -32533009 - B2_Mm1a SINE B2 0 193 2 5 1261 490 222 27 18 chr12 88725430 88725540 -32531990 + PB1D9 SINE Alu 10 120 0 5 1261 1214 42 0 0 chr12 88725583 88725721 -32531809 + B1_Mus1 SINE Alu 2 139 -9 5 1261 221 0 0 33 chr12 88725721 88725751 -32531779 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1261 484 191 128 0 chr12 88727158 88727285 -32530245 - B1_Mm SINE Alu -4 145 3 5 1261 964 87 43 14 chr12 88727656 88727796 -32529734 + B1_Mur4 SINE Alu 1 144 -6 5 1261 412 179 70 78 chr12 88727846 88727961 -32529569 + B1_Mus1 SINE Alu 35 148 0 5 1261 204 40 0 0 chr12 88728905 88728930 -32528600 + (CCCGG)n Simple_repeat Simple_repeat 1 25 0 5 1261 492 229 260 11 chr12 88730108 88730285 -32527245 + MIR SINE MIR 42 262 0 5 1261 1117 188 14 14 chr12 88730485 88730696 -32526834 + B3 SINE B2 1 211 -5 5 1261 27 29 0 0 chr12 88730701 88730735 -32526795 + AT_rich Low_complexity Low_complexity 1 34 0 5 1261 495 308 15 0 chr12 88730750 88730883 -32526647 + ID_B1 SINE B4 81 215 -9 5 1261 573 278 15 15 chr12 88730972 88731096 -32526434 + B4A SINE B4 112 237 -55 5 1261 860 153 14 27 chr12 88731096 88731244 -32526286 + B1_Mur4 SINE Alu 5 150 0 5 1261 191 167 0 23 chr12 88731254 88731297 -32526233 + GA-rich Low_complexity Low_complexity 3 44 0 5 1261 375 285 162 2 chr12 88731424 88731587 -32525943 + B3 SINE B2 6 191 -2 5 1261 322 156 26 13 chr12 88731601 88731679 -32525851 + GA-rich Low_complexity Low_complexity 4 82 0 5 1261 1141 86 37 0 chr12 88731681 88731844 -32525686 + B2_Mm2 SINE B2 27 195 0 5 1261 1259 41 0 0 chr12 88731846 88731993 -32525537 + B1_Mm SINE Alu 1 147 0 5 1261 228 288 0 17 chr12 88731994 88732054 -32525476 + GA-rich Low_complexity Low_complexity 3 61 0 5 1261 303 265 71 28 chr12 88732829 88732979 -32524551 + MIR SINE MIR 13 175 -101 5 1261 453 90 0 0 chr12 88733052 88733119 -32524411 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1261 195 42 0 0 chr12 88733153 88733177 -32524353 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1261 27 0 0 0 chr12 88733177 88733204 -32524326 + AT_rich Low_complexity Low_complexity 1 27 0 5 1261 1030 110 7 7 chr12 88733335 88733481 -32524049 - B1_Mur4 SINE Alu 0 150 5 5 1261 564 166 415 7 chr12 88733491 88733643 -32523887 - B3 SINE B2 -1 215 2 5 1261 1223 41 14 0 chr12 88733654 88733800 -32523730 - B1_Mus1 SINE Alu 0 148 1 5 1261 450 200 0 0 chr12 88733800 88733895 -32523635 + RLTR31B_Mm LTR ERVK 271 365 -192 5 1261 21 0 0 0 chr12 88733934 88733955 -32523575 + AT_rich Low_complexity Low_complexity 1 21 0 5 1261 340 349 0 28 chr12 88733958 88734106 -32523424 - ID_B1 SINE B4 -23 201 65 5 1261 1169 223 48 41 chr12 88734736 88735031 -32522499 - MTD LTR MaLR -14 405 109 6 1261 678 111 0 20 chr12 88735085 88735186 -32522344 - B1_Mur3 SINE Alu 0 149 51 6 1261 293 233 20 91 chr12 88735131 88735230 -32522300 - MT2B LTR ERVL -344 257 166 6 157 856 254 122 14 chr12 88735665 88735944 -32521586 + Lx3C LINE L1 6665 6973 -3 6 1262 878 180 0 6 chr12 88735969 88736148 -32521382 + GA-rich Low_complexity Low_complexity 3 180 0 6 1262 1111 92 0 0 chr12 88736260 88736401 -32521129 + B1_Mus1 SINE Alu 2 142 -6 6 1262 213 39 0 0 chr12 88736405 88736431 -32521099 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 6 1262 186 43 0 0 chr12 88736538 88736561 -32520969 + (GGGAGA)n Simple_repeat Simple_repeat 3 25 0 6 1262 499 204 20 108 chr12 88736941 88737062 -32520468 + ID_B1 SINE B4 90 208 -16 6 1262 276 30 0 0 chr12 88737062 88737095 -32520435 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 6 1262 499 204 20 108 chr12 88737095 88737107 -32520423 + ID_B1 SINE B4 209 214 -10 6 1262 303 284 25 0 chr12 88737107 88737188 -32520342 + ID4_ SINE ID 1 83 0 6 1262 499 204 20 108 chr12 88737188 88737201 -32520329 + ID_B1 SINE B4 215 224 0 6 1262 293 184 42 79 chr12 88737223 88737299 -32520231 + B1F SINE Alu 46 119 -1 6 1262 387 0 0 0 chr12 88737490 88737533 -32519997 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1262 892 149 28 0 chr12 88737584 88737725 -32519805 + B1_Mur4 SINE Alu 6 150 0 6 1262 22 0 0 0 chr12 88737738 88737760 -32519770 + AT_rich Low_complexity Low_complexity 1 22 0 6 1262 363 279 13 0 chr12 88737855 88737934 -32519596 + ID4_ SINE ID 2 81 -2 6 1262 267 250 29 59 chr12 88738247 88738349 -32519181 + PB1D10 SINE Alu 18 116 -1 6 1262 243 125 0 0 chr12 88738385 88738425 -32519105 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1262 931 138 7 7 chr12 88738425 88738571 -32518959 - B1_Mur4 SINE Alu 0 150 5 6 1262 272 262 73 139 chr12 88738460 88738611 -32518919 - MT2B LTR ERVL -337 264 124 6 1262 390 269 185 7 chr12 88738954 88739089 -32518441 + RSINE1 SINE B4 3 161 -4 6 1262 745 234 0 14 chr12 88739123 88739270 -32518260 - B1_Mus2 SINE Alu 0 147 3 6 1262 1870 155 37 16 chr12 88739272 88739593 -32517937 + Lx5 LINE L1 6723 7050 0 6 1262 587 187 0 9 chr12 88739722 88739830 -32517700 - B3 SINE B2 -109 107 1 6 1262 930 155 0 7 chr12 88739967 88740116 -32517414 - B1_Mur4 SINE Alu -2 148 1 6 1262 437 242 247 18 chr12 88740342 88740565 -32516965 - RMER15 LTR ERVL 0 575 302 6 1262 277 255 39 96 chr12 88740589 88740745 -32516785 - RMER15 LTR ERVL -414 161 15 6 1262 369 0 0 0 chr12 88740857 88740898 -32516632 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1262 847 145 35 0 chr12 88740966 88741111 -32516419 - B1_Mur4 SINE Alu 0 150 1 6 1262 901 224 26 65 chr12 88741115 88741344 -32516186 - ID_B1 SINE B4 0 224 5 6 1262 227 65 0 0 chr12 88741385 88741416 -32516114 + B3 SINE B2 1 31 -185 6 1262 297 51 0 0 chr12 88741427 88741466 -32516064 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1262 1079 73 0 0 chr12 88741466 88741602 -32515928 - B1_Mus2 SINE Alu -10 137 2 6 1262 652 319 60 9 chr12 88741790 88742005 -32515525 - B4A SINE B4 -66 226 1 6 1262 547 254 18 0 chr12 88742106 88742220 -32515310 - PB1D10 SINE Alu -1 116 1 6 1262 615 51 0 0 chr12 88742241 88742320 -32515210 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1262 526 167 94 109 chr12 88742320 88742439 -32515091 - B1_Mm SINE Alu -28 119 1 6 1262 1178 56 14 0 chr12 88742622 88742766 -32514764 + B1_Mur4 SINE Alu 5 150 0 6 1262 713 269 56 38 chr12 88742784 88743104 -32514426 + L1MB7 LINE L1 3845 4170 -1976 6 1262 485 227 36 9 chr12 88743107 88743218 -32514312 + PB1D10 SINE Alu 4 117 0 6 1262 1134 256 131 41 chr12 88743254 88743889 -32513641 + L1MB7 LINE L1 5417 6108 -76 6 1262 462 108 0 39 chr12 88743972 88744049 -32513481 - B1_Mur3 SINE Alu -1 148 75 6 1262 324 0 0 0 chr12 88744164 88744200 -32513330 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1262 598 185 0 34 chr12 88744248 88744397 -32513133 - B2_Mm2 SINE B2 -80 136 2 6 1262 577 288 26 7 chr12 88744488 88744642 -32512888 - RSINE1 SINE B4 -6 159 3 6 1262 236 293 52 0 chr12 88744739 88744797 -32512733 + B4 SINE B4 86 146 -146 6 1262 223 312 129 0 chr12 88744797 88744832 -32512698 + PB1D10 SINE Alu 1 105 -12 6 1262 693 193 36 0 chr12 88744838 88744978 -32512552 - B1_Mur4 SINE Alu -5 145 1 6 1262 1433 71 16 0 chr12 88745117 88745300 -32512230 + B2_Mm2 SINE B2 2 187 -8 6 1262 893 147 0 0 chr12 88745496 88745625 -32511905 + B3 SINE B2 2 130 -86 6 1262 492 18 0 0 chr12 88745654 88745711 -32511819 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1262 299 275 10 90 chr12 88745717 88745817 -32511713 - PB1D7 SINE Alu -28 92 1 6 1262 568 180 72 0 chr12 88745819 88745930 -32511600 - PB1D9 SINE Alu -1 119 1 6 1262 261 353 0 47 chr12 88745950 88746057 -32511473 - PB1 SINE Alu -11 116 15 6 1262 419 270 107 60 chr12 88746465 88746706 -32510824 + MLT1L LTR MaLR 232 487 -123 6 1262 21 36 0 0 chr12 88747110 88747138 -32510392 + AT_rich Low_complexity Low_complexity 1 28 0 6 1262 192 77 0 0 chr12 88747181 88747207 -32510323 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1262 857 155 16 0 chr12 88747207 88747336 -32510194 - B1_Mur4 SINE Alu -10 140 10 6 1262 258 324 0 39 chr12 88747314 88747391 -32510139 - MT2B LTR ERVL -314 287 214 6 1262 270 0 0 0 chr12 88747568 88747598 -32509932 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1262 257 243 68 0 chr12 88747616 88747687 -32509843 - B1_Mus1 SINE Alu -61 87 12 6 1262 251 287 33 44 chr12 88747621 88747707 -32509823 - ID_B1 SINE B4 -63 161 77 6 1262 1203 153 13 73 chr12 88747707 88747758 -32509772 - URR1B DNA MER1_type 0 225 186 6 1262 1342 66 65 11 chr12 88747758 88747943 -32509587 + B2_Mm2 SINE B2 1 195 0 6 1262 1203 153 13 73 chr12 88747943 88748123 -32509407 - URR1B DNA MER1_type -40 185 8 6 1262 226 250 29 115 chr12 88748129 88748233 -32509297 + YREP_Mm Unknown Unknown 172 266 -1546 6 1262 481 155 23 23 chr12 88748148 88748234 -32509296 - ID_B1 SINE B4 -8 216 131 6 1262 441 95 0 0 chr12 88748234 88748297 -32509233 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1262 180 0 0 0 chr12 88748371 88748391 -32509139 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 6 1262 1152 58 0 0 chr12 88748392 88748529 -32509001 - B1_Mus1 SINE Alu -10 138 2 6 1262 256 234 0 0 chr12 88749820 88749867 -32507663 - MIR SINE MIR -112 150 104 6 1262 29 28 0 0 chr12 88749916 88749952 -32507578 + AT_rich Low_complexity Low_complexity 1 36 0 6 1262 358 243 143 48 chr12 88750507 88750654 -32506876 - LTR33A_ LTR ERVL -4 527 367 6 1262 1201 68 0 0 chr12 88750770 88750916 -32506614 - B1_Mus2 SINE Alu 0 147 2 6 1262 381 277 110 32 chr12 88750924 88751087 -32506443 - MLT1B LTR MaLR -69 321 158 6 1262 370 287 29 10 chr12 88751120 88751222 -32506308 - ID_B1 SINE B4 0 224 121 6 1262 557 177 0 10 chr12 88751236 88751333 -32506197 - B1F2 SINE Alu -24 125 30 6 1262 260 232 19 78 chr12 88751253 88751356 -32506174 - MT2B LTR ERVL -338 263 167 6 1262 256 229 164 0 chr12 88751615 88751675 -32505855 + B1F2 SINE Alu 35 104 -45 6 1262 1265 49 0 18 chr12 88751675 88751841 -32505689 + B2_Mm2 SINE B2 1 163 -32 6 1262 239 261 0 44 chr12 88751873 88751941 -32505589 + ID_B1 SINE B4 113 177 -47 6 1262 452 341 32 0 chr12 88752048 88752171 -32505359 + B1F SINE Alu 18 144 -5 6 1262 220 211 0 50 chr12 88752235 88752295 -32505235 + G-rich Low_complexity Low_complexity 3 59 0 6 1262 225 247 122 132 chr12 88752772 88752977 -32504553 + MT2B2 LTR ERVL 36 238 -346 6 1262 703 117 24 40 chr12 88752922 88753047 -32504483 + B1_Mur3 SINE Alu 27 149 0 6 1262 518 259 33 33 chr12 88753102 88753222 -32504308 + RSINE1 SINE B4 46 165 0 6 1262 237 206 66 211 chr12 88753109 88753253 -32504277 + B2_Mm2 SINE B2 54 182 -13 6 1262 1188 21 7 14 chr12 88753253 88753401 -32504129 + B1_Mus1 SINE Alu 2 148 0 6 1262 237 206 66 211 chr12 88753401 88753422 -32504108 + B2_Mm2 SINE B2 183 195 0 6 1262 550 307 17 6 chr12 88753443 88753623 -32503907 + B3A SINE B2 1 182 -16 6 1262 206 32 0 31 chr12 88753716 88753748 -32503782 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1262 559 152 0 29 chr12 88753753 88753855 -32503675 - B1_Mur4 SINE Alu -2 148 50 6 1262 288 0 0 0 chr12 88753980 88754012 -32503518 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1262 1631 130 6 232 chr12 88754556 88754876 -32502654 + RMER17C LTR ERVK 1 209 -201 6 1262 1218 107 11 6 chr12 88754876 88755054 -32502476 - B2_Mm1t SINE B2 -14 179 1 6 1262 1631 130 6 232 chr12 88755054 88755263 -32502267 + RMER17C LTR ERVK 210 410 0 6 1262 1319 128 191 4 chr12 88755263 88755514 -32502016 - RLTR11A LTR ERVK -230 298 1 6 1262 252 257 13 13 chr12 88755584 88755659 -32501871 + CT-rich Low_complexity Low_complexity 3 77 0 6 1262 369 247 12 0 chr12 88755667 88755748 -32501782 - ID4_ SINE ID 0 83 2 6 1262 486 352 41 9 chr12 88755833 88756051 -32501479 + MLT1F1 LTR MaLR 88 312 -257 6 1262 285 29 0 0 chr12 88756120 88756154 -32501376 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1262 200 59 29 0 chr12 88756211 88756245 -32501285 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1262 1052 74 22 0 chr12 88756245 88756380 -32501150 - B1_Mur4 SINE Alu -11 139 2 6 1262 223 191 0 21 chr12 88756535 88756583 -32500947 + T-rich Low_complexity Low_complexity 3 49 0 6 1262 737 148 241 6 chr12 88756592 88756762 -32500768 - B3 SINE B2 -2 214 5 6 1262 280 356 27 49 chr12 88756766 88756949 -32500581 - LTR79 LTR ERVL -322 205 27 6 1262 235 315 0 27 chr12 88757545 88757620 -32499910 - tRNA-Ala-GCA tRNA tRNA 0 75 3 7 1262 517 198 9 26 chr12 88757799 88757913 -32499617 + B2_Mm2 SINE B2 65 176 -19 7 1262 378 0 0 0 chr12 88757988 88758030 -32499500 + (TTA)n Simple_repeat Simple_repeat 3 44 0 7 1262 280 320 94 28 chr12 88758030 88758125 -32499405 - PB1D10 SINE Alu -12 105 1 7 1262 824 92 232 13 chr12 88758366 88758521 -32499009 + B2_Mm2 SINE B2 2 190 -5 7 1262 460 97 365 10 chr12 88758597 88758701 -32498829 - B2_Mm2 SINE B2 -6 189 49 7 1262 1122 85 20 120 chr12 88758746 88758946 -32498584 - B2_Mm2 SINE B2 -14 181 2 7 1262 1669 32 0 0 chr12 88759508 88759697 -32497833 + B2_Mm1a SINE B2 1 189 -4 7 1262 212 59 29 0 chr12 88760657 88760691 -32496839 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 7 1262 549 77 39 0 chr12 88761312 88761390 -32496140 + B2_Mm2 SINE B2 111 191 -4 7 1262 270 0 0 0 chr12 88761966 88761996 -32495534 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1262 1260 54 0 0 chr12 88762073 88762221 -32495309 - B1_Mus1 SINE Alu 0 148 1 7 1262 517 164 203 8 chr12 88762223 88762346 -32495184 - B1_Mus1 SINE Alu 0 148 2 7 1262 2797 30 0 6 chr12 88762352 88762682 -32494848 + L1_Mus1 LINE L1 6240 6567 0 7 1262 431 200 65 19 chr12 88763294 88763401 -32494129 - PB1D10 SINE Alu -2 115 4 7 1262 427 150 11 81 chr12 88763620 88763707 -32493823 + B1_Mus1 SINE Alu 5 85 -63 7 1262 386 293 65 71 chr12 88763694 88763712 -32493818 - B4 SINE B4 -55 237 174 7 1262 560 208 104 0 chr12 88763712 88763837 -32493693 - B1_Mm SINE Alu -1 146 9 7 1262 386 293 65 71 chr12 88763837 88763863 -32493667 - B4 SINE B4 -55 173 70 7 1262 354 304 36 0 chr12 88763854 88763890 -32493640 - PB1D7 SINE Alu 0 120 5 7 1262 392 263 0 0 chr12 88763890 88763966 -32493564 - ID_B1 SINE B4 -63 161 86 7 1262 1443 69 0 5 chr12 88764053 88764242 -32493288 - B2_Mm2 SINE B2 -7 188 1 7 1262 817 120 17 0 chr12 88764272 88764389 -32493141 - PB1D9 SINE Alu -1 119 1 7 1262 251 215 101 0 chr12 88764482 88764561 -32492969 - L1M5 LINE L1 -544 5580 5494 7 1262 240 236 125 0 chr12 88765750 88765822 -32491708 + L1M5 LINE L1 5616 5696 -428 7 1262 261 0 0 0 chr12 88765961 88765990 -32491540 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1262 833 56 0 0 chr12 88765990 88766097 -32491433 + B2_Mm2 SINE B2 52 158 -37 7 1262 1136 83 7 0 chr12 88766171 88766316 -32491214 + B1_Mus2 SINE Alu 2 147 0 7 1262 493 206 135 0 chr12 88766340 88766466 -32491064 - B1_Mur4 SINE Alu -7 143 1 7 1262 282 273 129 20 chr12 88766473 88766574 -32490956 - B3 SINE B2 -7 209 98 7 1262 328 291 0 79 chr12 88766664 88766791 -32490739 - PB1D9 SINE Alu -1 119 3 7 1262 751 297 10 15 chr12 88766927 88767132 -32490398 + B3 SINE B2 8 211 -5 7 1262 21 36 0 0 chr12 88767150 88767178 -32490352 + AT_rich Low_complexity Low_complexity 1 28 0 7 1262 554 220 76 45 chr12 88768005 88768162 -32489368 - B3 SINE B2 -9 207 46 7 1262 641 182 79 57 chr12 88768302 88768442 -32489088 - B1_Mm SINE Alu -4 143 1 7 1262 401 296 164 7 chr12 88769131 88769277 -32488253 - ID_B1 SINE B4 -55 169 1 7 1262 486 0 0 0 chr12 88769476 88769530 -32488000 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1262 468 263 70 0 chr12 88770345 88770459 -32487071 - RSINE1 SINE B4 -33 132 11 7 1262 628 277 62 29 chr12 88770547 88770755 -32486775 - B3 SINE B2 0 216 2 7 1262 263 219 368 9 chr12 88770803 88770909 -32486621 - RSINE1 SINE B4 -10 155 12 7 1262 1688 229 117 100 chr12 88771018 88771761 -32485769 - RMER6A LTR ERVK 0 756 1 7 1262 397 256 139 52 chr12 88771761 88771952 -32485578 - B4A SINE B4 -83 209 2 7 1262 207 0 0 0 chr12 88772301 88772324 -32485206 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 7 1262 395 300 27 9 chr12 88772668 88772779 -32484751 - B1F2 SINE Alu -6 143 31 7 1262 225 0 0 0 chr12 88772786 88772811 -32484719 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1262 228 313 216 46 chr12 88773279 88773520 -32484010 - Lx8 LINE L1 -20 7453 7172 7 1262 1157 92 92 0 chr12 88773862 88774035 -32483495 + B2_Mm2 SINE B2 1 189 -6 7 1262 797 170 0 22 chr12 88774192 88774330 -32483200 - B1_Mus2 SINE Alu 0 147 13 7 1262 588 211 125 0 chr12 88774714 88774842 -32482688 - B3 SINE B2 -10 206 63 7 1262 271 149 0 21 chr12 88775242 88775290 -32482240 - B2_Mm2 SINE B2 -102 93 47 7 1262 1277 107 11 0 chr12 88775324 88775501 -32482029 - B2_Mm1t SINE B2 -14 179 1 7 1262 855 260 109 19 chr12 88775521 88775916 -32481614 + RLTR12B LTR ERVK 42 491 -37 7 1262 308 252 86 78 chr12 88776191 88776307 -32481223 - B4 SINE B4 -2 290 174 7 1262 271 353 108 0 chr12 88776309 88776411 -32481119 - ID_B1 SINE B4 -109 115 3 7 1262 239 269 38 25 chr12 88776468 88776548 -32480982 - B4 SINE B4 -210 82 2 7 1262 189 344 71 16 chr12 88776889 88777016 -32480514 - L2 LINE L2 -632 2787 2654 7 1262 475 228 82 39 chr12 88777816 88777833 -32479697 - ID_B1 SINE B4 -46 246 167 7 1262 844 78 85 0 chr12 88777833 88777962 -32479568 - B1_Mus1 SINE Alu 0 148 9 7 1262 475 228 82 39 chr12 88777962 88777979 -32479551 - ID_B1 SINE B4 -46 166 73 7 1262 317 264 22 11 chr12 88778219 88778311 -32479219 - MIR SINE MIR -149 113 21 7 1262 234 0 0 0 chr12 88778770 88778796 -32478734 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1262 198 0 0 0 chr12 88778796 88778817 -32478713 + (GA)n Simple_repeat Simple_repeat 1 22 0 7 1262 1166 75 0 0 chr12 88779580 88779727 -32477803 - B1_Mm SINE Alu 0 147 1 7 1262 1231 48 0 0 chr12 88779928 88780074 -32477456 + B1_Mus2 SINE Alu 2 147 0 7 1262 322 278 62 0 chr12 88780299 88780396 -32477134 + B3 SINE B2 98 200 -16 7 1262 215 346 39 19 chr12 88780512 88780615 -32476915 + B3A SINE B2 84 188 -10 7 1262 369 193 145 0 chr12 88780630 88780713 -32476817 + B3 SINE B2 3 97 -119 7 1262 1166 124 0 10 chr12 88780718 88780913 -32476617 + B2_Mm2 SINE B2 2 194 -1 7 1262 973 198 45 20 chr12 88781595 88781796 -32475734 - B3 SINE B2 -9 207 2 7 1262 28 0 0 0 chr12 88782093 88782121 -32475409 + AT_rich Low_complexity Low_complexity 1 28 0 7 1262 533 183 132 37 chr12 88782196 88782332 -32475198 + B1_Mur3 SINE Alu 1 149 0 7 1262 386 198 62 54 chr12 88782571 88782683 -32474847 - PB1D9 SINE Alu -7 113 1 7 1262 207 0 0 0 chr12 88783609 88783632 -32473898 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1262 849 147 21 7 chr12 88783645 88783789 -32473741 + B1_Mur4 SINE Alu 2 147 -3 7 1262 530 245 20 65 chr12 88783899 88784052 -32473478 - B3 SINE B2 -70 146 1 7 1262 276 149 0 0 chr12 88784288 88784335 -32473195 + (T)n Simple_repeat Simple_repeat 1 47 0 7 1262 216 67 0 0 chr12 88785124 88785154 -32472376 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 7 1262 595 261 6 18 chr12 88786039 88786207 -32471323 - B3A SINE B2 -6 192 27 7 1262 1105 50 36 0 chr12 88786228 88786367 -32471163 - B1_Mus1 SINE Alu -3 145 2 7 1262 265 290 168 0 chr12 88787245 88787400 -32470130 + Tigger11a DNA MER2_type 554 734 -1 7 1262 1429 194 40 22 chr12 88787580 88787902 -32469628 - ORR1D1 LTR MaLR -46 328 1 7 1262 262 240 0 18 chr12 88788634 88788708 -32468822 + ID4 SINE ID 21 90 -62 7 1262 671 85 88 52 chr12 88788811 88788947 -32468583 + B1_Mus1 SINE Alu 6 146 -2 7 1262 339 308 10 0 chr12 88789026 88789130 -32468400 - Lx8 LINE L1 -916 6557 6453 7 1262 377 223 102 51 chr12 88789135 88789253 -32468277 - ID_B1 SINE B4 -15 209 86 7 1262 215 283 17 0 chr12 88789655 88789715 -32467815 + RSINE1 SINE B4 23 83 -82 7 1262 675 250 6 68 chr12 88789663 88789839 -32467691 + B3A SINE B2 31 195 -21 7 1262 189 74 0 0 chr12 88789997 88790024 -32467506 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1262 229 219 75 45 chr12 88790449 88790516 -32467014 - ID4_ SINE ID -9 74 6 7 1262 1082 167 49 5 chr12 88791238 88791443 -32466087 - Lx3B LINE L1 0 6973 6760 7 1262 376 250 78 0 chr12 88792078 88792194 -32465336 + B1_Mur2 SINE Alu 24 148 -1 7 1262 454 241 50 43 chr12 88792226 88792365 -32465165 + B1_Mur2 SINE Alu 2 141 -6 7 1262 303 202 149 28 chr12 88792383 88792490 -32465040 + Lx8 LINE L1 7353 7472 -1 7 1262 526 326 28 31 chr12 88792835 88793126 -32464404 + B4A SINE B4 1 290 -2 7 1262 422 245 27 36 chr12 88793379 88793489 -32464041 + MTC LTR MaLR 305 413 -8 7 1262 225 184 105 0 chr12 88795012 88795088 -32462442 - PB1D7 SINE Alu -31 89 6 7 1262 581 248 247 4 chr12 88795362 88795593 -32461937 + B4A SINE B4 2 288 -4 7 1262 389 189 81 0 chr12 88795676 88795750 -32461780 + B4A SINE B4 149 228 -64 7 1262 485 268 75 29 chr12 88795751 88795924 -32461606 + Lx8 LINE L1 6471 6651 -822 7 1262 257 333 47 23 chr12 88796001 88796130 -32461400 + L2a LINE L2 3036 3167 -259 7 1262 296 311 18 36 chr12 88796208 88796318 -32461212 - PB1D10 SINE Alu 0 117 10 7 1262 479 250 0 35 chr12 88797010 88797126 -32460404 + PB1D9 SINE Alu 2 113 -7 7 1262 321 302 17 0 chr12 88797200 88797316 -32460214 + PB1D7 SINE Alu 3 120 0 7 1262 211 219 195 0 chr12 88798429 88798511 -32459019 + B1F2 SINE Alu 52 149 0 8 1262 1173 124 26 26 chr12 88798635 88798826 -32458704 + B2_Mm1t SINE B2 2 192 -1 8 1262 404 218 11 0 chr12 88799084 88799171 -32458359 - B1_Mus2 SINE Alu -18 129 42 8 1262 457 261 27 0 chr12 88799207 88799318 -32458212 - PB1D10 SINE Alu -2 115 2 8 1262 413 278 37 31 chr12 88800755 88800918 -32456612 - RSINE1 SINE B4 0 165 2 8 1262 377 244 146 34 chr12 88800922 88801100 -32456430 - L1ME1 LINE L1 -242 5937 5740 8 1262 1010 120 56 62 chr12 88801104 88801299 -32456231 - B2_Mm2 SINE B2 -1 194 1 8 1262 612 209 67 13 chr12 88801779 88801929 -32455601 + B3 SINE B2 2 159 -57 8 1262 22 0 0 0 chr12 88802029 88802051 -32455479 + AT_rich Low_complexity Low_complexity 1 22 0 8 1262 247 207 17 33 chr12 88802169 88802229 -32455301 - PB1D9 SINE Alu -5 115 57 8 1262 1398 73 10 40 chr12 88802246 88802445 -32455085 - B2_Mm1t SINE B2 0 193 1 8 1262 614 294 93 59 chr12 88803184 88803539 -32453991 - MTE2a LTR MaLR -12 367 1 8 1262 750 39 0 19 chr12 88804935 88805040 -32452490 - B1_Mus1 SINE Alu -12 136 34 8 1262 776 149 173 28 chr12 88805035 88805214 -32452316 - URR1A DNA MER1_type -21 205 1 8 1262 2215 147 37 8 chr12 88805952 88806335 -32451195 + ORR1B1 LTR MaLR 1 394 0 8 1262 228 222 0 0 chr12 88806374 88806419 -32451111 + G-rich Low_complexity Low_complexity 2 46 0 8 1262 227 194 0 0 chr12 88806443 88806479 -32451051 - PB1D9 SINE Alu -84 36 1 8 1262 192 40 0 0 chr12 88806559 88806584 -32450946 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 8 1262 1523 78 0 0 chr12 88806584 88806777 -32450753 + B2_Mm1a SINE B2 1 193 0 8 1262 687 212 164 22 chr12 88807991 88808174 -32449356 + B3 SINE B2 1 209 -7 8 1262 783 149 28 0 chr12 88808212 88808353 -32449177 - B1_Mus2 SINE Alu 0 147 3 8 1262 210 143 0 0 chr12 88808897 88808932 -32448598 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1262 1468 64 37 0 chr12 88808989 88809176 -32448354 + B2_Mm2 SINE B2 1 194 -1 8 1262 255 295 112 11 chr12 88809177 88809266 -32448264 - RSINE1 SINE B4 -56 109 12 8 1262 790 129 22 1 chr12 88809887 88810027 -32447503 - B2_Mm1t SINE B2 -43 155 2 8 1262 3669 53 13 0 chr12 88810102 88810554 -32446976 - L1_Mus1 LINE L1 0 6567 6110 8 1262 317 231 60 35 chr12 88810562 88810659 -32446871 - PB1D10 SINE Alu -7 110 12 8 1262 432 172 11 22 chr12 88810833 88810922 -32446608 - B3 SINE B2 -127 89 2 8 1262 351 254 48 56 chr12 88811241 88811317 -32446213 - MTD LTR MaLR -1 378 308 8 1262 2789 103 2 17 chr12 88811317 88811730 -32445800 - MTB_Mm LTR MaLR 0 407 1 8 1262 421 276 98 72 chr12 88811730 88812099 -32445431 - MTD LTR MaLR -72 307 5 8 1262 236 203 33 17 chr12 88812130 88812190 -32445340 - B1F2 SINE Alu -40 109 49 8 1262 207 88 0 0 chr12 88812705 88812739 -32444791 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1262 596 240 16 0 chr12 88813803 88813932 -32443598 - B1_Mus1 SINE Alu -5 143 13 8 1262 652 189 136 0 chr12 88813960 88814092 -32443438 + B1_Mur4 SINE Alu 1 150 0 8 1262 1261 192 61 67 chr12 88814098 88814428 -32443102 - ORR1A4 LTR MaLR 0 329 2 8 1262 1199 75 0 0 chr12 88814723 88814870 -32442660 + B1_Mus1 SINE Alu 2 148 0 8 1262 524 116 0 11 chr12 88814871 88814958 -32442572 + (GAA)n Simple_repeat Simple_repeat 2 87 0 8 1262 504 0 0 0 chr12 88814959 88815015 -32442515 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1262 465 269 76 28 chr12 88815032 88815177 -32442353 + RSINE1 SINE B4 13 164 -1 8 1262 873 212 66 15 chr12 88815202 88815398 -32442132 - B3 SINE B2 -9 207 2 8 1262 222 37 0 0 chr12 88815571 88815598 -32441932 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 8 1262 980 112 23 12 chr12 88816066 88816237 -32441293 + ORR1A3-int LTR MaLR 869 1041 -922 8 1262 988 118 14 0 chr12 88816238 88816382 -32441148 + B1_Mus2 SINE Alu 2 147 0 8 1262 597 160 80 44 chr12 88816654 88816791 -32440739 - Lx4B LINE L1 -11 7047 6906 8 1262 540 253 19 19 chr12 88816989 88817150 -32440380 + MLT1B LTR MaLR 1 161 -229 8 1262 654 107 116 0 chr12 88817150 88817262 -32440268 + B2_Mm1t SINE B2 1 125 -68 8 1262 1052 91 0 27 chr12 88817279 88817426 -32440104 - B1_Mus1 SINE Alu -1 147 5 8 1262 399 265 50 17 chr12 88817581 88817700 -32439830 - ORR1B1 LTR MaLR -1 378 256 8 1262 475 246 18 0 chr12 88818017 88818127 -32439403 - B1_Mus1 SINE Alu 0 148 37 8 1262 425 229 14 152 chr12 88818113 88818324 -32439206 - ORR1B1 LTR MaLR -174 220 39 8 1262 297 0 0 0 chr12 88818331 88818364 -32439166 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1262 704 182 6 83 chr12 88818502 88818670 -32438860 + B2_Mm1t SINE B2 22 176 -17 8 1262 320 110 324 82 chr12 88818704 88818815 -32438715 + B2_Mm2 SINE B2 48 186 -7 8 1262 234 0 0 0 chr12 88818934 88818960 -32438570 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 8 1262 402 176 137 72 chr12 88818965 88819118 -32438412 + MTE2a LTR MaLR 39 201 -193 8 1262 409 234 18 18 chr12 88819124 88819233 -32438297 + B1_Mus1 SINE Alu 38 146 -2 8 1262 406 239 50 17 chr12 88819541 88819660 -32437870 + MTE2a LTR MaLR 256 378 -1 8 1262 296 231 15 0 chr12 88819976 88820041 -32437489 + B3A SINE B2 1 66 -132 8 1262 838 166 7 7 chr12 88820058 88820198 -32437332 + Lx7 LINE L1 7194 7333 -363 8 1262 939 152 6 24 chr12 88820466 88820635 -32436895 - B2_Mm2 SINE B2 -28 167 2 8 1262 205 175 0 0 chr12 88822629 88822669 -32434861 + CT-rich Low_complexity Low_complexity 2 41 0 8 1262 26 0 0 0 chr12 88824218 88824244 -32433286 + AT_rich Low_complexity Low_complexity 1 26 0 8 1262 3022 76 5 5 chr12 88824367 88824763 -32432767 + MTA_Mm LTR MaLR 1 396 0 8 1262 1000 107 0 0 chr12 88825889 88826038 -32431492 + B2_Mm2 SINE B2 2 150 -45 8 1262 229 26 26 26 chr12 88826040 88826079 -32431451 + (TAA)n Simple_repeat Simple_repeat 1 39 0 8 1262 2854 49 3 0 chr12 88826757 88827102 -32430428 + ORR1A1 LTR MaLR 1 346 0 8 1262 4442 74 16 7 chr12 88827102 88827800 -32429730 + ORR1A1-int LTR MaLR 1 704 -1088 8 1262 22 35 0 0 chr12 88827835 88827864 -32429666 + AT_rich Low_complexity Low_complexity 1 29 0 8 1262 5447 112 71 81 chr12 88827987 88828506 -32429024 + L1_Mus3 LINE L1 5599 6143 -495 8 1262 434 17 0 17 chr12 88828506 88828566 -32428964 - LTRIS4 LTR ERV1 -448 59 1 8 1262 5447 112 71 81 chr12 88828566 88829013 -32428517 + L1_Mus3 LINE L1 6144 6614 -24 8 1262 679 107 18 0 chr12 88829013 88829125 -32428405 + B1_Mus1 SINE Alu 35 148 0 8 1262 252 186 0 0 chr12 88829125 88829184 -32428346 + A-rich Low_complexity Low_complexity 1 59 0 8 1262 588 14 0 0 chr12 88829192 88829261 -32428269 + (GAA)n Simple_repeat Simple_repeat 2 70 0 8 1262 2546 207 35 20 chr12 88829576 88830697 -32426833 - ORR1A2-int LTR MaLR -787 1176 1 8 1262 1540 194 6 78 chr12 88830697 88830878 -32426652 - ORR1A2 LTR MaLR 0 327 170 8 1262 1691 31 0 0 chr12 88830878 88831071 -32426459 - B2_Mm1a SINE B2 0 193 1 8 1262 1540 194 6 78 chr12 88831071 88831236 -32426294 - ORR1A2 LTR MaLR -158 169 6 8 1262 21 0 0 0 chr12 88831806 88831827 -32425703 + AT_rich Low_complexity Low_complexity 1 21 0 8 1262 594 232 13 32 chr12 88831855 88832011 -32425519 + B3 SINE B2 64 216 0 8 1262 407 256 135 0 chr12 88832063 88832196 -32425334 - RSINE1 SINE B4 -2 163 13 8 1262 291 85 0 0 chr12 88832370 88832417 -32425113 + (T)n Simple_repeat Simple_repeat 1 47 0 8 1262 1189 68 0 0 chr12 88832417 88832564 -32424966 - B1_Mm SINE Alu 0 147 1 8 1262 380 181 136 71 chr12 88832593 88832748 -32424782 + MTE2a LTR MaLR 39 203 -191 8 1262 452 239 18 0 chr12 88832752 88832861 -32424669 + B1_Mus1 SINE Alu 38 148 0 8 1262 384 261 68 17 chr12 88833174 88833291 -32424239 + MTE2a LTR MaLR 256 378 -1 8 1262 706 158 7 76 chr12 88833458 88833602 -32423928 + B1_Mus1 SINE Alu 15 148 0 8 1262 237 139 0 0 chr12 88833626 88833669 -32423861 + (A)n Simple_repeat Simple_repeat 1 43 0 8 1262 397 178 14 0 chr12 88833814 88833887 -32423643 + B3A SINE B2 1 74 -124 8 1262 732 178 48 7 chr12 88833887 88834034 -32423496 + Lx7 LINE L1 7181 7333 -363 8 1262 741 221 6 24 chr12 88834300 88834467 -32423063 - B2_Mm2 SINE B2 -30 165 2 8 1262 192 91 0 0 chr12 88834656 88834669 -32422861 + (T)n Simple_repeat Simple_repeat 1 13 0 8 1262 1158 81 0 0 chr12 88834669 88834817 -32422713 - B1_Mus1 SINE Alu 0 148 1 8 1262 192 91 0 0 chr12 88834817 88834836 -32422694 + (T)n Simple_repeat Simple_repeat 1 19 0 8 1262 2154 122 9 0 chr12 88834896 88835225 -32422305 + L1_Mus3 LINE L1 6302 6633 -5 8 1262 426 39 0 0 chr12 88835298 88835350 -32422180 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 8 1262 978 90 38 0 chr12 88837438 88837571 -32419959 - B1_Mm SINE Alu -9 138 1 8 1262 896 129 155 30 chr12 88837571 88837738 -32419792 - B2_Mm2 SINE B2 -6 189 1 8 1262 32872 81 13 4 chr12 88838098 88843291 -32414239 + L1Md_F2 LINE L1 346 5584 -299 8 1262 7611 71 14 2 chr12 88843293 88844277 -32413253 + L1Md_F2 LINE L1 5587 6582 0 8 1262 958 118 0 0 chr12 88844491 88844635 -32412895 + B1_Mus2 SINE Alu 2 145 -2 8 1262 1059 203 40 59 chr12 88844906 88845178 -32412352 - ORR1D1 LTR MaLR -1 373 107 8 1262 3931 65 6 0 chr12 88845178 88845674 -32411856 + L1_Mus1 LINE L1 5611 6109 -458 8 1262 180 0 0 0 chr12 88846591 88846611 -32410919 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1262 2097 158 15 44 chr12 88846829 88847234 -32410296 - ORR1B1 LTR MaLR 0 394 2 8 1262 207 323 0 15 chr12 88848646 88848712 -32408818 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1262 980 148 22 22 chr12 88849363 88849543 -32407987 + B2_Mm2 SINE B2 2 181 -14 8 1262 6228 138 9 26 chr12 88849673 88850258 -32407272 + L1_Mus3 LINE L1 5599 6174 -464 8 1262 3389 113 22 10 chr12 88850258 88850759 -32406771 - LTRIS4 LTR ERV1 0 507 1 8 1262 6228 138 9 26 chr12 88850759 88851209 -32406321 + L1_Mus3 LINE L1 6175 6616 -22 8 1262 689 117 9 0 chr12 88851209 88851320 -32406210 + B1_Mus1 SINE Alu 37 148 0 9 1262 465 122 0 0 chr12 88851334 88851408 -32406122 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 9 1262 2520 206 34 50 chr12 88851776 88852916 -32404614 - ORR1A2-int LTR MaLR -760 1203 1 9 1262 1680 191 6 9 chr12 88852916 88853239 -32404291 - ORR1A2 LTR MaLR 0 327 6 9 1262 219 274 0 46 chr12 88853492 88853557 -32403973 - B4A SINE B4 -229 63 2 9 1262 500 250 26 20 chr12 88853857 88853988 -32403542 + B3 SINE B2 64 197 -19 9 1262 233 98 24 0 chr12 88853988 88854029 -32403501 + (TA)n Simple_repeat Simple_repeat 1 42 0 9 1262 500 250 26 20 chr12 88854029 88854048 -32403482 + B3 SINE B2 198 214 -2 9 1262 218 188 0 0 chr12 88854063 88854111 -32403419 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1262 180 0 0 0 chr12 88854407 88854427 -32403103 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1262 1097 102 0 7 chr12 88854427 88854575 -32402955 - B1_Mm SINE Alu 0 147 1 9 1262 297 122 313 70 chr12 88854577 88854692 -32402838 - B2_Mm2 SINE B2 -3 190 47 9 1262 656 238 18 0 chr12 88854706 88854874 -32402656 - B2_Mm1t SINE B2 -19 174 4 9 1262 375 224 40 72 chr12 88854973 88855015 -32402515 - B4 SINE B4 -86 206 86 9 1262 552 108 0 0 chr12 88855015 88855098 -32402432 - B1_Mus2 SINE Alu -64 83 1 9 1262 431 154 142 77 chr12 88855135 88855290 -32402240 + ORR1B1 LTR MaLR 39 203 -191 9 1262 395 269 19 0 chr12 88855295 88855403 -32402127 + B1_Mus1 SINE Alu 39 148 0 9 1262 576 0 0 0 chr12 88855648 88855712 -32401818 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 9 1262 424 240 57 16 chr12 88855731 88855868 -32401662 + ORR1B1 LTR MaLR 256 405 -14 9 1262 356 208 14 0 chr12 88856191 88856263 -32401267 + B3A SINE B2 2 74 -124 9 1262 754 191 40 7 chr12 88856263 88856411 -32401119 + Lx7 LINE L1 7181 7333 -363 9 1262 716 233 6 24 chr12 88856677 88856844 -32400686 - B2_Mm2 SINE B2 -30 165 2 9 1262 2067 130 9 0 chr12 88857095 88857417 -32400113 + L1_Mus3 LINE L1 6302 6626 -12 9 1262 23 0 0 0 chr12 88857499 88857522 -32400008 + AT_rich Low_complexity Low_complexity 1 23 0 9 1262 1062 68 0 0 chr12 88859608 88859740 -32397790 - B1_Mm SINE Alu -14 133 2 9 1262 1240 115 27 6 chr12 88859751 88859934 -32397596 - B2_Mm2 SINE B2 -8 187 1 9 1262 1116 133 11 22 chr12 88861948 88862133 -32395397 + B2_Mm2 SINE B2 2 184 -11 9 1262 204 125 0 0 chr12 88862515 88862547 -32394983 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1262 3642 196 35 33 chr12 88862578 88863527 -32394003 - RLTR13A2 LTR ERVK 0 958 8 9 1262 6476 69 35 3 chr12 88863532 88864637 -32392893 - L1Md_F2 LINE L1 -39 6543 5386 9 1262 393 327 73 31 chr12 88864749 88865008 -32392522 - RLTR4_MM-int LTR ERV1 -3307 4299 4009 9 1262 1320 149 5 0 chr12 88865331 88865553 -32391977 - Lx2 LINE L1 0 6997 6775 9 1262 4583 131 3 4 chr12 88865551 88866269 -32391261 - Lx2 LINE L1 -352 6645 5923 9 157 278 382 27 41 chr12 88866588 88867000 -32390530 - MuRRS4-int LTR ERV1 -3357 1706 1301 9 1263 279 0 0 0 chr12 88867000 88867031 -32390499 + (TGG)n Simple_repeat Simple_repeat 3 33 0 9 1263 3089 147 14 21 chr12 88868526 88868986 -32388544 - RMER2 LTR ERV1 0 567 111 9 1263 3094 62 18 3 chr12 88868986 88869376 -32388154 + MTA_Mm LTR MaLR 1 396 0 9 1263 3089 147 14 21 chr12 88869376 88869486 -32388044 - RMER2 LTR ERV1 -457 110 1 9 1263 4264 167 23 4 chr12 88869486 88870304 -32387226 + ORR1A3-int LTR MaLR 1055 1888 -75 9 1263 35550 73 2 4 chr12 88870311 88876540 -32380990 - L1Md_F2 LINE L1 -14 6571 274 9 1263 1579 179 10 0 chr12 88876589 88876886 -32380644 + ORR1A3 LTR MaLR 27 326 0 9 1263 4409 50 0 13 chr12 88876905 88877457 -32380073 - L1Md_F2 LINE L1 0 6582 6038 9 1263 275 176 0 0 chr12 88877457 88877508 -32380022 + ORR1A3 LTR MaLR 276 326 0 9 1263 308 130 37 0 chr12 88877886 88877940 -32379590 - ORR1B2 LTR MaLR 0 367 312 9 1263 4768 64 0 3 chr12 88877947 88878546 -32378984 - L1_Mus2 LINE L1 -4 6562 5966 9 1263 1539 71 0 0 chr12 88878546 88878743 -32378787 - L1_Mm LINE L1 -3392 2491 2295 9 1263 2786 102 56 2 chr12 88879617 88880048 -32377482 - L1_Mm LINE L1 -3573 2310 1857 9 1263 492 257 27 14 chr12 88880822 88880968 -32376562 + B3 SINE B2 64 211 -5 9 1263 295 309 171 0 chr12 88881016 88881139 -32376391 - RSINE1 SINE B4 -2 163 20 9 1263 351 122 0 25 chr12 88881302 88881409 -32376121 - B2_Mm2 SINE B2 -8 187 47 9 1263 657 182 125 6 chr12 88881441 88881601 -32375929 - B2_Mm2 SINE B2 -16 179 1 9 1263 368 261 9 48 chr12 88881751 88881919 -32375611 + ORR1B1 LTR MaLR 3 214 -180 9 1263 310 280 50 0 chr12 88881913 88882013 -32375517 + B1_Mus1 SINE Alu 39 143 -5 9 1263 7577 93 11 4 chr12 88882472 88883488 -32374042 - RLTR13D5 LTR ERVK 0 1023 1 9 1263 336 119 0 0 chr12 88883949 88884008 -32373522 + (TCC)n Simple_repeat Simple_repeat 1 59 0 9 1263 257 169 42 84 chr12 88884181 88884229 -32373301 + PB1D10 SINE Alu 49 97 -20 9 1263 1927 148 15 6 chr12 88884229 88884555 -32372975 + ORR1A4 LTR MaLR 1 329 0 9 1263 257 169 42 84 chr12 88884555 88884577 -32372953 + PB1D10 SINE Alu 98 116 -1 9 1263 3110 167 146 17 chr12 88884686 88885339 -32372191 + RMER19A LTR ERVK 1 737 0 9 1263 1208 41 14 0 chr12 88885424 88885569 -32371961 + B1_Mus2 SINE Alu 1 147 0 9 1263 269 283 86 11 chr12 88885755 88885848 -32371682 - MTEb LTR MaLR -8 371 272 9 1263 282 214 0 0 chr12 88886000 88886056 -32371474 - B1_Mur4 SINE Alu -83 67 12 9 1263 459 294 51 64 chr12 88886249 88886497 -32371033 + MTE2a LTR MaLR 3 263 -116 9 1263 182 353 35 12 chr12 88886793 88886879 -32370651 - MIR3 SINE MIR -7 201 114 9 1263 330 252 47 31 chr12 88887176 88887303 -32370227 - CYRA11_Mm Unknown Y-chromosome -250 367 239 9 1263 615 155 35 0 chr12 88887190 88887306 -32370224 + URR1A DNA MER1_type 46 165 -61 9 1263 1280 157 0 41 chr12 88887307 88887359 -32370171 + ORR1A2 LTR MaLR 1 44 -283 9 1263 1062 157 11 17 chr12 88887359 88887540 -32369990 + B2_Mm2 SINE B2 3 182 -13 9 1263 1280 170 12 42 chr12 88887540 88887758 -32369772 + ORR1A2 LTR MaLR 45 315 -69 9 1263 363 248 8 71 chr12 88888308 88888434 -32369096 + ORR1A2 LTR MaLR 209 326 0 9 1263 2927 176 24 5 chr12 88888434 88889021 -32368509 + ORR1A2-int LTR MaLR 1 598 -1194 9 1263 439 229 73 0 chr12 88888982 88889078 -32368452 + MT2B LTR ERVL 157 259 -342 9 1263 4171 35 0 8 chr12 88889094 88889580 -32367950 + LTRIS_Mm LTR ERV1 1 482 0 9 1263 32892 61 24 18 chr12 88889580 88894012 -32363518 + MuRRS-int LTR ERV1 1 4690 0 9 1263 4225 29 0 6 chr12 88894012 88894497 -32363033 + LTRIS_Mm LTR ERV1 1 482 0 9 1263 180 0 0 0 chr12 88894497 88894517 -32363013 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 1263 960 130 0 0 chr12 88894517 88894655 -32362875 - B1_Mus2 SINE Alu -9 138 1 9 1263 429 156 89 0 chr12 88894655 88894745 -32362785 + MT2B LTR ERVL 154 251 -350 9 1263 355 214 92 0 chr12 88894745 88894828 -32362702 + ORR1A2-int LTR MaLR 718 906 -1057 9 1263 4728 59 14 0 chr12 88895318 88895897 -32361633 - LTRIS_Mus LTR ERV1 0 587 1 9 1263 3672 193 16 26 chr12 88895972 88896578 -32360952 - MMVL30-int LTR ERV1 -93 3605 2997 9 1263 351 0 0 0 chr12 88896578 88896617 -32360913 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 1263 3672 288 42 65 chr12 88896617 88897682 -32359848 - MMVL30-int LTR ERV1 -3169 4432 2875 9 1263 896 150 7 7 chr12 88897738 88897910 -32359620 - MMVL30-int LTR ERV1 -1913 1785 1649 9 1263 1473 39 0 0 chr12 88897911 88898091 -32359439 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 9 1263 519 60 0 0 chr12 88898091 88898158 -32359372 + (TCC)n Simple_repeat Simple_repeat 3 69 0 9 1263 716 204 11 35 chr12 88898158 88898344 -32359186 - MMVL30-int LTR ERV1 -2037 1661 1519 9 1263 210 305 0 0 chr12 88898357 88898416 -32359114 - B1F2 SINE Alu -90 59 1 9 1263 240 111 0 0 chr12 88898483 88898519 -32359011 + (TCTCCC)n Simple_repeat Simple_repeat 5 40 0 9 1263 366 88 0 0 chr12 88898623 88898680 -32358850 - MMVL30-int LTR ERV1 -2187 1511 1455 9 1263 348 209 244 41 chr12 88899012 88899276 -32358254 - MMVL30-int LTR ERV1 -2206 1492 1172 9 1263 306 225 69 84 chr12 88899680 88899811 -32357719 - MMVL30-int LTR ERV1 -2726 972 844 9 1263 296 94 19 19 chr12 88899894 88899948 -32357582 - MMVL30-int LTR ERV1 -2870 828 775 9 1263 188 103 51 0 chr12 88900183 88900222 -32357308 + (CAGA)n Simple_repeat Simple_repeat 3 43 0 9 1263 5328 40 0 5 chr12 88900487 88901122 -32356408 - L1Md_F2 LINE L1 0 6582 5951 9 1263 7926 67 4 43 chr12 88901149 88901239 -32356291 + L1Md_F2 LINE L1 189 278 -6338 9 1263 4573 64 0 12 chr12 88901239 88901810 -32355720 - LTRIS2 LTR ERV1 0 564 1 9 1263 34980 74 2 8 chr12 88901810 88907708 -32349822 + L1Md_F2 LINE L1 279 6137 -445 9 1263 3407 57 31 0 chr12 88907708 88908131 -32349399 + RLTR10C LTR ERVK 1 436 0 9 1263 805 101 0 0 chr12 88908131 88908240 -32349290 + MuRRS-int LTR ERV1 4582 4690 0 9 1263 4118 35 4 0 chr12 88908240 88908720 -32348810 + LTRIS_Mm LTR ERV1 1 482 0 9 1263 16823 97 19 14 chr12 88908720 88910154 -32347376 - L1Md_F LINE L1 -286 5597 4170 9 1263 3607 181 33 60 chr12 88910154 88911033 -32346497 + RLTR13A LTR ERVK 1 855 0 9 1263 16823 97 19 14 chr12 88911033 88912065 -32345465 - L1Md_F LINE L1 -1714 4169 3117 9 1263 2916 161 8 8 chr12 88912054 88912561 -32344969 - L1Md_F LINE L1 -5711 905 399 9 1263 243 239 0 0 chr12 88912722 88912789 -32344741 + CT-rich Low_complexity Low_complexity 2 68 0 9 1263 8371 177 19 25 chr12 88912789 88915185 -32342345 - Lx2B LINE L1 0 7000 4638 9 1263 242 29 29 0 chr12 88915185 88915220 -32342310 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 9 1263 8371 184 20 46 chr12 88915220 88915747 -32341783 - Lx2B LINE L1 -1240 4637 4105 9 1263 3340 252 112 13 chr12 88915751 88916761 -32340769 - Lx2B LINE L1 -24 6976 5867 9 1263 1537 195 10 7 chr12 88916772 88917072 -32340458 + Lx4B LINE L1 5589 5889 -1169 9 1263 329 237 0 0 chr12 88917069 88917145 -32340385 - L1_Mur2 LINE L1 -1297 4580 4505 9 1263 284 226 45 36 chr12 88917161 88917271 -32340259 - Lx4B LINE L1 -4 7054 6944 9 1263 244 182 23 0 chr12 88917556 88917600 -32339930 + RLTR19B LTR ERVK 6 50 -665 9 1263 2841 82 0 5 chr12 88917600 88917967 -32339563 - RLTR8 LTR ERVK 0 365 1 9 1263 5241 125 8 32 chr12 88917967 88918462 -32339068 - SRV_MM-int LTR ERVK 0 6167 5674 9 1263 3284 21 57 0 chr12 88918462 88918851 -32338679 + IAPLTR2a LTR ERVK 1 411 0 9 1263 5241 125 8 32 chr12 88918851 88919155 -32338375 - SRV_MM-int LTR ERVK -494 5673 5388 9 1263 30354 79 8 35 chr12 88919181 88919498 -32338032 - SRV_MM-int LTR ERVK -770 5397 5091 9 1263 1217 41 0 0 chr12 88919498 88919644 -32337886 + B1_Mm SINE Alu 1 146 -1 9 1263 30354 79 8 35 chr12 88919644 88923501 -32334029 - SRV_MM-int LTR ERVK -1077 5090 1336 9 1263 2417 147 24 0 chr12 88923511 88923885 -32333645 - SRV_MM-int LTR ERVK -5157 1010 628 9 1263 1664 214 48 2 chr12 88924171 88924565 -32332965 + RMER4B LTR ERVK 10 421 -164 9 1263 20753 74 13 8 chr12 88924641 88928692 -32328838 + L1Md_Gf LINE L1 412 5586 -300 9 1263 3595 163 40 20 chr12 88928692 88929336 -32328194 - Lx2 LINE L1 -70 6927 6271 9 1263 349 321 0 67 chr12 88929442 88929562 -32327968 + B1_Mur1 SINE Alu 6 117 -32 9 1263 284 232 229 10 chr12 88929666 88929762 -32327768 + B3 SINE B2 64 180 -36 9 1263 241 231 39 0 chr12 88929756 88929808 -32327722 + B1F1 SINE Alu 88 141 -8 9 1263 257 182 0 127 chr12 88929936 88929999 -32327531 - PB1 SINE Alu -26 101 47 9 1263 203 61 0 29 chr12 88930463 88930497 -32327033 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 9 1263 586 235 30 0 chr12 88930498 88930630 -32326900 + ID_B1 SINE B4 80 215 -9 9 1263 262 304 114 0 chr12 88930632 88930711 -32326819 + RSINE1 SINE B4 1 88 -77 1 1263 207 0 0 0 chr12 88930711 88930734 -32326796 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1 1263 533 282 100 25 chr12 88930831 88931031 -32326499 + B3 SINE B2 2 216 0 1 1263 1059 69 20 20 chr12 88931455 88931467 -32326063 - B1_Mm SINE Alu 0 147 138 1 1263 274 23 23 23 chr12 88931467 88931511 -32326019 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1263 1059 69 20 20 chr12 88931511 88931645 -32325885 - B1_Mm SINE Alu -10 137 1 1 1263 428 236 102 39 chr12 88931674 88931802 -32325728 + B1_Mur2 SINE Alu 5 140 -9 1 1263 436 167 19 47 chr12 88931942 88932049 -32325481 + B1_Mur3 SINE Alu 14 117 -32 1 1263 261 0 0 0 chr12 88932049 88932078 -32325452 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1263 269 293 0 51 chr12 88932266 88932345 -32325185 - ID_B1 SINE B4 -26 198 124 1 1263 575 240 45 13 chr12 88932350 88932506 -32325024 - URR1A DNA MER1_type -6 220 60 1 1263 228 269 0 0 chr12 88932701 88932753 -32324777 - B1F2 SINE Alu -89 60 9 1 1263 381 132 0 0 chr12 88932955 88933040 -32324490 - RLTR22_Mus LTR ERVK -822 1026 915 1 1263 24 53 0 0 chr12 88933040 88933078 -32324452 + AT_rich Low_complexity Low_complexity 1 38 0 1 1263 38803 30 0 0 chr12 88933143 88939743 -32317787 - L1Md_T LINE L1 0 6585 1 1 1263 2775 139 18 137 chr12 88939743 88940459 -32317071 - RLTR22_Mur LTR ERVK -852 996 366 1 1263 1741 194 72 21 chr12 88940492 88940923 -32316607 + MTC-int LTR MaLR 2 454 -804 1 1263 567 275 8 0 chr12 88940950 88941081 -32316449 + B3A SINE B2 45 176 -22 1 1263 296 287 58 0 chr12 88942037 88942124 -32315406 + B1_Mm SINE Alu 7 98 -49 1 1263 1018 176 25 149 chr12 88942493 88942861 -32314669 + RLTRETN_Mm LTR ERVK 1 322 0 1 1263 261 83 0 0 chr12 88942873 88942909 -32314621 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 1 1263 353 262 3 6 chr12 88943216 88943315 -32314215 - ORR1A2 LTR MaLR -179 150 54 1 1263 240 329 0 37 chr12 88943338 88943420 -32314110 - B1_Mus1 SINE Alu -61 87 9 1 1263 234 0 0 0 chr12 88943816 88943842 -32313688 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1263 3354 170 9 2 chr12 88943842 88944504 -32313026 - Lx3C LINE L1 -607 5975 5319 1 1263 1227 225 140 12 chr12 88944491 88944819 -32312711 + Lx3C LINE L1 6607 6976 0 1 1263 805 213 21 32 chr12 88945139 88945328 -32312202 + B2_Mm2 SINE B2 1 187 -8 1 1263 494 256 0 6 chr12 88945425 88945590 -32311940 + (TATATG)n Simple_repeat Simple_repeat 2 165 0 1 1263 227 79 26 0 chr12 88945774 88945812 -32311718 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1263 507 262 7 58 chr12 88946620 88946774 -32310756 + B1_Mur2 SINE Alu 3 148 -1 1 1263 31201 86 58 9 chr12 88950104 88955793 -32301737 + L1Md_F3 LINE L1 206 6194 -390 1 1263 3399 200 85 34 chr12 88955815 88956740 -32300790 - ORR1A2-int LTR MaLR -990 973 1 1 1263 1686 216 6 6 chr12 88956740 88957062 -32300468 - ORR1A2 LTR MaLR 0 327 6 1 1263 723 233 7 7 chr12 88957681 88957832 -32299698 + B3 SINE B2 64 214 -2 1 1263 487 279 101 0 chr12 88957882 88958011 -32299519 - RSINE1 SINE B4 -4 161 20 1 1263 1087 117 0 7 chr12 88958226 88958372 -32299158 - B1_Mm SINE Alu -2 145 1 1 1263 302 143 319 71 chr12 88958374 88958487 -32299043 - B2_Mm2 SINE B2 -5 188 47 1 1263 21 0 0 0 chr12 88958559 88958580 -32298950 + AT_rich Low_complexity Low_complexity 1 21 0 1 1263 180 0 0 0 chr12 88958961 88958981 -32298549 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1263 1149 95 0 7 chr12 88958981 88959129 -32298401 - B1_Mm SINE Alu 0 147 1 1 1263 338 114 319 71 chr12 88959132 88959245 -32298285 - B2_Mm2 SINE B2 -5 188 47 1 1263 761 220 18 0 chr12 88959259 88959427 -32298103 - B2_Mm1t SINE B2 -19 174 4 1 1263 360 259 40 72 chr12 88959525 88959567 -32297963 - B4 SINE B4 -86 206 86 1 1263 540 145 0 0 chr12 88959567 88959650 -32297880 - B1_Mus2 SINE Alu -64 83 1 1 1263 503 172 129 65 chr12 88959687 88959842 -32297688 + ORR1B1 LTR MaLR 39 203 -191 1 1263 386 284 18 0 chr12 88959846 88959955 -32297575 + B1_Mus1 SINE Alu 38 148 0 1 1263 486 0 0 0 chr12 88960202 88960256 -32297274 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 1 1263 456 261 47 21 chr12 88960274 88960418 -32297112 + ORR1B1 LTR MaLR 219 378 -1 1 1263 421 192 14 0 chr12 88960734 88960807 -32296723 + B3A SINE B2 1 74 -124 1 1263 793 182 34 7 chr12 88960807 88960956 -32296574 + Lx7 LINE L1 7181 7333 -363 1 1263 467 209 48 43 chr12 88961209 88961335 -32296195 - B2_Mm2 SINE B2 -10 183 56 1 1263 1639 52 5 0 chr12 88961556 88961748 -32295782 - B2_Mm1t SINE B2 0 193 1 1 1263 2145 131 12 0 chr12 88961824 88962145 -32295385 + L1_Mus3 LINE L1 6302 6626 -12 1 1263 978 106 15 0 chr12 88964298 88964430 -32293100 - B1_Mm SINE Alu -12 135 2 1 1263 568 106 53 0 chr12 88964432 88964526 -32293004 - B2_Mm2 SINE B2 0 195 97 1 1263 755 127 8 0 chr12 88964529 88964655 -32292875 - Lx2 LINE L1 -96 6901 6775 1 1263 4417 139 3 6 chr12 88964653 88965372 -32292158 - Lx2 LINE L1 -352 6645 5923 1 1263 490 365 27 34 chr12 88965691 88966100 -32291430 - MuRRS4-int LTR ERV1 -3357 1706 1301 1 1263 3115 137 60 22 chr12 88967505 88967940 -32289590 - RMER2 LTR ERV1 0 567 111 1 1263 3289 76 2 0 chr12 88967940 88968335 -32289195 + MTA_Mm LTR MaLR 1 396 0 1 1263 3115 137 60 22 chr12 88968335 88968445 -32289085 - RMER2 LTR ERV1 -457 110 1 1 1263 4709 166 22 5 chr12 88968445 88969290 -32288240 + ORR1A3-int LTR MaLR 1055 1914 -49 1 1263 1734 187 3 12 chr12 88969278 88969598 -32287932 + ORR1A3 LTR MaLR 10 326 0 1 1263 379 125 0 0 chr12 88969977 88970033 -32287497 - ORR1B2 LTR MaLR 0 367 312 1 1263 4698 84 0 2 chr12 88970040 88970624 -32286906 - L1_Mus2 LINE L1 -4 6562 5980 1 1263 1419 103 5 0 chr12 88970636 88970839 -32286691 - L1_Mm LINE L1 -3392 2491 2288 1 1263 2936 109 13 2 chr12 88971721 88972170 -32285360 - L1_Mm LINE L1 -3573 2310 1857 1 1263 431 287 35 14 chr12 88972946 88973091 -32284439 + B3 SINE B2 64 211 -5 1 1263 315 237 204 10 chr12 88973171 88973269 -32284261 - RSINE1 SINE B4 -35 130 14 1 1263 411 124 302 50 chr12 88973424 88973543 -32283987 - B2_Mm2 SINE B2 -4 191 43 1 1263 526 248 38 0 chr12 88973575 88973708 -32283822 - B2_Mm1t SINE B2 -48 145 8 1 1263 375 260 133 67 chr12 88973829 88973994 -32283536 + ORR1B1 LTR MaLR 39 214 -180 1 1263 413 272 19 0 chr12 88973988 88974091 -32283439 + B1_Mus1 SINE Alu 39 143 -5 1 1263 4418 99 28 9 chr12 88974553 88975198 -32282332 - RLTR13D5 LTR ERVK 0 1023 367 1 1263 6834 22 5 0 chr12 88975198 88976008 -32281522 + RLTR13B2 LTR ERVK 1 814 -8 1 1263 36050 169 35 31 chr12 88976008 88977790 -32279740 + ETnERV3-int LTR ERVK 186 1685 -5568 1 1263 333 0 0 0 chr12 88977790 88977827 -32279703 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 1263 36050 99 36 29 chr12 88977827 88980413 -32277117 + ETnERV3-int LTR ERVK 1431 3976 -1832 1 1263 297 0 0 0 chr12 88980413 88980446 -32277084 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1263 36050 99 36 29 chr12 88980446 88982119 -32275411 + ETnERV3-int LTR ERVK 3977 5759 -49 1 1263 7649 22 5 0 chr12 88982141 88982959 -32274571 + RLTR13B2 LTR ERVK 1 822 0 1 1263 2796 73 8 0 chr12 88982959 88983328 -32274202 - RLTR13D5 LTR ERVK -651 372 1 1 1263 339 182 0 0 chr12 88983816 88983893 -32273637 + CT-rich Low_complexity Low_complexity 1 77 0 1 1263 385 134 5 5 chr12 88984669 88984740 -32272790 + MT-int LTR MaLR 668 730 -368 1 1263 1252 140 20 8 chr12 88984825 88985071 -32272459 + MT-int LTR MaLR 739 963 -135 1 1263 1110 217 14 5 chr12 88985695 88985908 -32271622 - B3 SINE B2 0 216 2 1 1263 420 259 49 86 chr12 88986213 88986369 -32271161 - MTE2a LTR MaLR -1 420 250 1 1263 234 62 0 0 chr12 88986397 88986429 -32271101 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1263 534 70 0 0 chr12 88986467 88986538 -32270992 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 1263 230 281 48 24 chr12 88986943 88987027 -32270503 - ORR1B1 LTR MaLR -2 368 283 1 1263 357 287 37 0 chr12 88987379 88987487 -32270043 - B1_Mus1 SINE Alu 0 148 37 1 1263 408 188 136 71 chr12 88987490 88987645 -32269885 - ORR1B1 LTR MaLR -191 203 39 1 1263 180 0 0 0 chr12 88987650 88987670 -32269860 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1263 1084 131 12 0 chr12 88988048 88988216 -32269314 + B2_Mm1t SINE B2 2 171 -22 1 1263 1638 124 114 3 chr12 88988217 88988516 -32269014 - RLTR47_MM LTR ERV1 -200 332 1 1 1263 673 165 17 17 chr12 88988867 88988984 -32268546 - B1_Mus1 SINE Alu -19 129 13 1 1263 668 189 150 0 chr12 88989010 88989137 -32268393 + B1_Mus1 SINE Alu 3 148 0 1 1263 1148 191 152 24 chr12 88989326 88989615 -32267915 - ORR1B1 LTR MaLR -32 362 37 1 1263 3512 120 45 7 chr12 88989721 88990276 -32267254 - MT2B2 LTR ERVL -8 576 1 1 1263 570 294 48 0 chr12 88990490 88990636 -32266894 + RSINE1 SINE B4 13 165 0 1 1263 1013 192 57 29 chr12 88990678 88990887 -32266643 - B3 SINE B2 0 216 2 1 1263 1168 112 94 6 chr12 88991012 88991192 -32266338 - MT2B2 LTR ERVL -245 339 144 1 1263 295 290 40 70 chr12 88991365 88991465 -32266065 + B4 SINE B4 2 98 -194 1 1263 268 218 0 0 chr12 88991696 88991754 -32265776 + ORR1A2 LTR MaLR 1 58 -269 1 1263 348 125 0 0 chr12 88991794 88991858 -32265672 + (T)n Simple_repeat Simple_repeat 1 64 0 1 1263 1167 102 0 0 chr12 88991858 88992005 -32265525 - B1_Mm SINE Alu 0 147 1 1 1263 460 195 0 44 chr12 88992007 88992098 -32265432 + ORR1A2 LTR MaLR 46 132 -195 1 1263 2274 149 47 99 chr12 88992352 88992603 -32264927 + L1VL4 LINE L1 483 734 -5568 1 1263 1175 89 0 0 chr12 88992603 88992749 -32264781 + B1_Mus2 SINE Alu 1 146 -1 1 1263 2274 136 16 96 chr12 88992749 88993320 -32264210 + L1VL4 LINE L1 735 1250 -2309 1 1263 2068 179 3 14 chr12 88993327 88993689 -32263841 + Lx2A1 LINE L1 6331 6688 -320 1 1263 1107 218 57 89 chr12 88993689 88994061 -32263469 + RMER16 LTR ERVK 174 533 0 1 1263 377 203 0 0 chr12 88994061 88994130 -32263400 - Lx8 LINE L1 -727 6746 6678 1 1263 331 321 28 56 chr12 88994539 88994681 -32262849 - B1F1 SINE Alu -1 148 11 1 1263 212 278 75 17 chr12 88994685 88994800 -32262730 - MIR SINE MIR -102 160 39 1 1263 275 200 0 48 chr12 88994867 88994930 -32262600 + HY3 scRNA scRNA 1 60 -41 1 1263 249 143 0 23 chr12 88994933 88994976 -32262554 + B1_Mur4 SINE Alu 9 50 -100 1 1263 780 175 0 0 chr12 88995130 88995250 -32262280 - B1_Mur3 SINE Alu -6 143 24 1 1263 424 238 28 28 chr12 88995267 88995375 -32262155 - PB1 SINE Alu -7 120 13 1 1263 233 254 0 29 chr12 88995494 88995563 -32261967 + B3A SINE B2 5 71 -127 1 1263 1225 174 113 0 chr12 88995563 88995747 -32261783 + RLTR14 LTR ERV1 1 191 -191 1 1263 180 0 0 0 chr12 88995747 88995767 -32261763 + (CTAA)n Simple_repeat Simple_repeat 1 20 0 1 1263 1225 174 113 0 chr12 88995767 88995847 -32261683 + RLTR14 LTR ERV1 192 294 -88 1 1263 474 138 32 65 chr12 88995847 88995865 -32261665 - B1_Mur2 SINE Alu -49 100 86 1 1263 3505 61 7 0 chr12 88995865 88996289 -32261241 - L1Md_F2 LINE L1 -1 6581 6155 1 1263 480 137 0 1 chr12 88996289 88996363 -32261167 - B1_Mus1 SINE Alu -64 85 11 1 1263 1133 223 0 5 chr12 88996484 88996691 -32260839 - B3 SINE B2 -7 209 4 1 1263 297 75 0 0 chr12 88996779 88996819 -32260711 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 1263 273 29 0 0 chr12 88996819 88996853 -32260677 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1264 207 323 0 15 chr12 89046902 89046968 -32210562 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1264 997 142 22 22 chr12 89047621 89047801 -32209729 + B2_Mm2 SINE B2 2 181 -14 2 1264 6286 141 6 20 chr12 89047931 89048516 -32209014 + L1_Mus3 LINE L1 5599 6174 -464 3 1264 3454 99 22 18 chr12 89048516 89049021 -32208509 - LTRIS4 LTR ERV1 0 507 1 4 1264 6286 141 6 20 chr12 89049021 89049468 -32208062 + L1_Mus3 LINE L1 6175 6616 -22 3 1264 716 99 9 0 chr12 89049468 89049579 -32207951 + B1_Mus1 SINE Alu 37 148 0 5 1264 399 113 0 0 chr12 89049593 89049655 -32207875 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 6 1264 2614 209 34 24 chr12 89050024 89050913 -32206617 - ORR1A2-int LTR MaLR -760 1203 239 7 1264 188 34 0 33 chr12 89050913 89050943 -32206587 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1264 2614 189 20 20 chr12 89050943 89051181 -32206349 - ORR1A2-int LTR MaLR -1725 238 1 7 1264 1582 216 6 6 chr12 89051181 89051503 -32206027 - ORR1A2 LTR MaLR 0 327 6 7 1264 671 233 7 7 chr12 89052122 89052273 -32205257 + B3 SINE B2 64 214 -2 9 1264 437 279 101 0 chr12 89052323 89052452 -32205078 - RSINE1 SINE B4 -4 161 20 1 1264 1024 117 0 7 chr12 89052667 89052813 -32204717 - B1_Mm SINE Alu -2 145 1 1 1264 281 143 319 71 chr12 89052815 89052928 -32204602 - B2_Mm2 SINE B2 -5 188 47 1 1264 21 0 0 0 chr12 89053000 89053021 -32204509 + AT_rich Low_complexity Low_complexity 1 21 0 1 1264 1024 117 0 7 chr12 89053432 89053578 -32203952 - B1_Mm SINE Alu -2 145 1 1 1264 281 143 319 71 chr12 89053580 89053693 -32203837 - B2_Mm2 SINE B2 -5 188 47 1 1264 21 0 0 0 chr12 89053765 89053786 -32203744 + AT_rich Low_complexity Low_complexity 1 21 0 1 1264 1089 95 0 7 chr12 89054186 89054334 -32203196 - B1_Mm SINE Alu 0 147 1 1 1264 317 111 310 69 chr12 89054336 89054452 -32203078 - B2_Mm2 SINE B2 -2 191 47 1 1264 702 220 18 0 chr12 89054466 89054634 -32202896 - B2_Mm1t SINE B2 -19 174 4 1 1264 485 157 0 0 chr12 89054774 89054857 -32202673 - B1_Mus2 SINE Alu -64 83 1 2 1264 437 179 129 65 chr12 89054894 89055049 -32202481 + ORR1B1 LTR MaLR 39 203 -191 2 1264 352 284 18 0 chr12 89055053 89055162 -32202368 + B1_Mus1 SINE Alu 38 148 0 2 1264 612 0 0 0 chr12 89055406 89055474 -32202056 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 2 1264 421 261 47 21 chr12 89055492 89055636 -32201894 + ORR1B1 LTR MaLR 219 378 -1 2 1264 393 192 14 0 chr12 89055952 89056025 -32201505 + B3A SINE B2 1 74 -124 2 1264 793 182 34 7 chr12 89056025 89056174 -32201356 + Lx7 LINE L1 7181 7333 -363 2 1264 420 216 51 43 chr12 89056427 89056544 -32200986 - B2_Mm2 SINE B2 -10 183 65 2 1264 1611 47 0 0 chr12 89056774 89056967 -32200563 - B2_Mm1a SINE B2 0 193 1 2 1264 2012 131 12 0 chr12 89057043 89057364 -32200166 + L1_Mus3 LINE L1 6302 6626 -12 2 1264 920 106 15 0 chr12 89059517 89059649 -32197881 - B1_Mm SINE Alu -12 135 2 2 1264 538 106 53 0 chr12 89059651 89059745 -32197785 - B2_Mm2 SINE B2 0 195 97 3 1264 765 127 8 0 chr12 89059748 89059874 -32197656 - Lx2 LINE L1 -96 6901 6775 3 1264 4442 139 3 6 chr12 89059872 89060591 -32196939 - Lx2 LINE L1 -352 6645 5923 3 1264 476 365 27 34 chr12 89060910 89061319 -32196211 - MuRRS4-int LTR ERV1 -3357 1706 1301 3 1264 2905 137 60 22 chr12 89062722 89063157 -32194373 - RMER2 LTR ERV1 0 567 111 3 1264 3126 76 2 0 chr12 89063157 89063552 -32193978 + MTA_Mm LTR MaLR 1 396 0 3 1264 2905 137 60 22 chr12 89063552 89063662 -32193868 - RMER2 LTR ERV1 -457 110 1 3 1264 4400 166 22 5 chr12 89063662 89064507 -32193023 + ORR1A3-int LTR MaLR 1055 1914 -49 3 1264 1617 177 3 0 chr12 89064516 89064815 -32192715 + ORR1A3 LTR MaLR 27 326 0 3 1264 358 125 0 0 chr12 89065194 89065250 -32192280 - ORR1B2 LTR MaLR 0 367 312 3 1264 4456 84 0 2 chr12 89065257 89065841 -32191689 - L1_Mus2 LINE L1 -4 6562 5980 3 1264 1406 103 5 0 chr12 89065853 89066056 -32191474 - L1_Mm LINE L1 -3392 2491 2288 3 1264 2907 109 13 2 chr12 89066938 89067387 -32190143 - L1_Mm LINE L1 -3573 2310 1857 3 1264 382 287 35 14 chr12 89068163 89068308 -32189222 + B3 SINE B2 64 211 -5 3 1264 276 237 204 10 chr12 89068388 89068486 -32189044 - RSINE1 SINE B4 -35 130 14 4 1264 375 110 313 52 chr12 89068641 89068756 -32188774 - B2_Mm2 SINE B2 -4 191 47 4 1264 465 224 26 0 chr12 89068792 89068908 -32188622 - B2_Mm1t SINE B2 -48 145 27 4 1264 339 268 12 48 chr12 89069044 89069211 -32188319 + ORR1B1 LTR MaLR 3 214 -180 4 1264 369 282 19 0 chr12 89069205 89069308 -32188222 + B1_Mus1 SINE Alu 39 143 -5 4 1264 4173 99 28 9 chr12 89069770 89070415 -32187115 - RLTR13D5 LTR ERVK 0 1023 367 4 1264 6494 22 5 0 chr12 89070415 89071225 -32186305 + RLTR13B2 LTR ERVK 1 814 -8 4 1264 35787 169 35 31 chr12 89071225 89073007 -32184523 + ETnERV3-int LTR ERVK 186 1685 -5568 4 1264 333 0 0 0 chr12 89073007 89073044 -32184486 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 1264 35787 99 36 29 chr12 89073044 89075630 -32181900 + ETnERV3-int LTR ERVK 1431 3976 -1832 4 1264 297 0 0 0 chr12 89075630 89075663 -32181867 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1264 35787 99 36 29 chr12 89075663 89077336 -32180194 + ETnERV3-int LTR ERVK 3977 5759 -49 4 1264 7347 20 5 0 chr12 89077358 89078176 -32179354 + RLTR13B2 LTR ERVK 1 822 0 5 1264 2647 73 8 0 chr12 89078176 89078545 -32178985 - RLTR13D5 LTR ERVK -651 372 1 5 1264 360 169 0 0 chr12 89079033 89079110 -32178420 + CT-rich Low_complexity Low_complexity 1 77 0 5 1264 361 128 2 0 chr12 89079886 89079957 -32177573 + MT-int LTR MaLR 668 730 -368 5 1264 1174 140 20 8 chr12 89080042 89080288 -32177242 + MT-int LTR MaLR 739 963 -135 5 1264 1068 204 15 0 chr12 89080924 89081125 -32176405 - B3 SINE B2 -11 205 2 5 1264 352 254 52 103 chr12 89081430 89081566 -32175964 - ORR1B1 LTR MaLR -1 378 250 5 1264 234 62 0 0 chr12 89081617 89081649 -32175881 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1264 606 63 0 0 chr12 89081687 89081766 -32175764 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 5 1264 322 287 37 0 chr12 89082607 89082715 -32174815 - B1_Mus1 SINE Alu 0 148 37 5 1264 364 184 25 75 chr12 89082718 89082877 -32174653 - ORR1B1 LTR MaLR -191 203 1 5 1264 180 0 0 0 chr12 89082878 89082898 -32174632 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1264 1019 131 12 0 chr12 89083276 89083444 -32174086 + B2_Mm1t SINE B2 2 171 -22 6 1264 1526 124 114 3 chr12 89083445 89083744 -32173786 - RLTR47_MM LTR ERV1 -200 332 1 6 1264 627 165 17 17 chr12 89084094 89084211 -32173319 - B1_Mus1 SINE Alu -19 129 13 6 1264 615 189 150 0 chr12 89084237 89084364 -32173166 + B1_Mus1 SINE Alu 3 148 0 6 1264 227 232 18 0 chr12 89084369 89084425 -32173105 - ORR1A4 LTR MaLR 0 329 273 6 1264 1066 191 152 24 chr12 89084557 89084846 -32172684 - ORR1B1 LTR MaLR -32 362 37 6 1264 3306 122 45 7 chr12 89084952 89085507 -32172023 - MT2B2 LTR ERVL -8 576 1 6 1264 516 294 48 0 chr12 89085721 89085867 -32171663 + RSINE1 SINE B4 13 165 0 6 1264 936 192 57 29 chr12 89085909 89086118 -32171412 - B3 SINE B2 0 216 2 6 1264 1131 95 94 6 chr12 89086243 89086423 -32171107 - MT2B2 LTR ERVL -245 339 144 6 1264 266 290 40 70 chr12 89086598 89086698 -32170832 + B4 SINE B4 2 98 -194 7 1264 250 211 0 0 chr12 89086935 89086987 -32170543 + ORR1A2 LTR MaLR 7 58 -271 7 1264 420 111 0 0 chr12 89087027 89087099 -32170431 + (T)n Simple_repeat Simple_repeat 1 72 0 7 1264 1113 102 0 0 chr12 89087099 89087246 -32170284 - B1_Mm SINE Alu 0 147 1 7 1264 427 195 0 44 chr12 89087248 89087339 -32170191 + ORR1A2 LTR MaLR 46 132 -195 7 1264 234 200 0 20 chr12 89087366 89087417 -32170113 + L1VL2 LINE L1 443 492 -5843 7 1264 2267 149 47 99 chr12 89087594 89087845 -32169685 + L1VL4 LINE L1 483 734 -5568 7 1264 1102 96 0 0 chr12 89087845 89087991 -32169539 + B1_Mus2 SINE Alu 1 146 -1 7 1264 2267 138 16 96 chr12 89087991 89088562 -32168968 + L1VL4 LINE L1 735 1250 -2309 7 1264 2073 179 3 16 chr12 89088569 89088932 -32168598 + Lx2A1 LINE L1 6331 6688 -320 7 1264 1000 221 57 89 chr12 89088932 89089304 -32168226 + RMER16 LTR ERVK 174 533 0 7 1264 382 203 0 0 chr12 89089304 89089373 -32168157 - Lx8 LINE L1 -727 6746 6678 7 1264 294 320 8 53 chr12 89089782 89089914 -32167616 - B1F1 SINE Alu -1 148 23 8 1264 190 273 38 25 chr12 89089927 89090006 -32167524 - MIR SINE MIR -102 160 81 8 1264 257 200 0 48 chr12 89090109 89090172 -32167358 + HY3 scRNA scRNA 1 60 -41 8 1264 231 143 0 23 chr12 89090175 89090218 -32167312 + B1_Mur4 SINE Alu 9 50 -100 8 1264 733 175 0 0 chr12 89090372 89090492 -32167038 - B1_Mur3 SINE Alu -6 143 24 8 1264 388 238 28 28 chr12 89090509 89090617 -32166913 - PB1 SINE Alu -7 120 13 8 1264 212 254 0 29 chr12 89090736 89090805 -32166725 + B3A SINE B2 5 71 -127 8 1264 1137 174 113 0 chr12 89090805 89090989 -32166541 + RLTR14 LTR ERV1 1 191 -191 8 1264 180 0 0 0 chr12 89090989 89091009 -32166521 + (CTAA)n Simple_repeat Simple_repeat 1 20 0 8 1264 1137 174 113 0 chr12 89091009 89091089 -32166441 + RLTR14 LTR ERV1 192 294 -88 8 1264 437 138 32 65 chr12 89091089 89091107 -32166423 - B1_Mur2 SINE Alu -49 100 86 8 1264 3332 62 7 0 chr12 89091107 89091530 -32166000 - L1Md_F2 LINE L1 -2 6580 6155 9 1264 450 137 0 1 chr12 89091530 89091604 -32165926 - B1_Mus1 SINE Alu -64 85 11 8 1264 1051 223 0 5 chr12 89091725 89091932 -32165598 - B3 SINE B2 -7 209 4 9 1264 297 75 0 0 chr12 89092020 89092060 -32165470 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 9 1264 273 29 0 0 chr12 89092060 89092094 -32165436 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1264 412 288 102 0 chr12 89092110 89092228 -32165302 - RSINE1 SINE B4 -32 133 4 9 1264 185 0 40 0 chr12 89092490 89092515 -32165015 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 9 1264 221 306 58 58 chr12 89092554 89092645 -32164885 + PB1D7 SINE Alu 6 100 -20 9 1264 1882 163 9 24 chr12 89092645 89092979 -32164551 + ORR1A4 LTR MaLR 1 329 0 9 1264 221 306 58 58 chr12 89092979 89092991 -32164539 + PB1D7 SINE Alu 101 109 -11 9 1264 246 32 0 0 chr12 89092991 89093022 -32164508 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1264 3133 166 140 17 chr12 89093110 89093766 -32163764 + RMER19A LTR ERVK 1 737 0 9 1264 1163 54 0 39 chr12 89093851 89094004 -32163526 + B1_Mus2 SINE Alu 1 147 0 1 1264 231 312 0 0 chr12 89094186 89094250 -32163280 - MTEb LTR MaLR -5 374 311 1 1264 293 200 0 0 chr12 89094434 89094489 -32163041 - B1_Mur4 SINE Alu -83 67 13 1 1264 473 293 87 142 chr12 89094663 89095009 -32162521 + MTEa LTR MaLR 3 329 -50 1 1264 182 353 35 12 chr12 89095205 89095291 -32162239 - MIR3 SINE MIR -7 201 114 1 1264 329 252 47 31 chr12 89095586 89095713 -32161817 - CYRA11_Mm Unknown Y-chromosome -250 367 239 1 1264 598 164 35 0 chr12 89095600 89095716 -32161814 + URR1A DNA MER1_type 46 165 -61 1 1264 1256 141 4 42 chr12 89095717 89095769 -32161761 + ORR1A2 LTR MaLR 1 44 -283 1 1264 1043 163 11 17 chr12 89095769 89095950 -32161580 + B2_Mm2 SINE B2 3 182 -13 1 1264 1256 141 4 42 chr12 89095950 89096134 -32161396 + ORR1A2 LTR MaLR 45 228 -99 1 1264 516 200 0 70 chr12 89096717 89096846 -32160684 + ORR1A2 LTR MaLR 207 326 0 1 1264 2897 184 13 2 chr12 89096846 89097400 -32160130 + ORR1A2-int LTR MaLR 1 560 -1403 1 1264 519 235 11 164 chr12 89097367 89097506 -32160024 + MT2B LTR ERVL 133 257 -344 1 1264 234 0 0 0 chr12 89097506 89097532 -32159998 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1264 1051 95 0 0 chr12 89097533 89097670 -32159860 - B1_Mus2 SINE Alu -10 137 1 1 1264 519 145 29 0 chr12 89097670 89097739 -32159791 + MT2B LTR ERVL 154 287 -314 1 1264 266 216 162 7 chr12 89097672 89097826 -32159704 + ORR1A2-int LTR MaLR 560 737 -1055 1 1264 612 0 0 0 chr12 89098163 89098231 -32159299 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 1 1264 361 280 49 24 chr12 89098249 89098393 -32159137 + ORR1A2 LTR MaLR 219 378 -1 1 1264 349 169 15 0 chr12 89098709 89098774 -32158756 + B3A SINE B2 2 67 -131 1 1264 743 218 32 0 chr12 89098775 89098931 -32158599 + Lx7 LINE L1 7175 7335 -361 1 1264 961 132 51 22 chr12 89099186 89099364 -32158166 - B2_Mm2 SINE B2 -8 187 5 1 1264 270 0 0 0 chr12 89099572 89099602 -32157928 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1264 252 0 0 0 chr12 89099602 89099629 -32157901 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1264 28 0 0 0 chr12 89102850 89102878 -32154652 + AT_rich Low_complexity Low_complexity 1 28 0 1 1264 2619 76 6 3 chr12 89104898 89105243 -32152287 + ORR1A1 LTR MaLR 1 346 0 1 1264 958 174 11 11 chr12 89106819 89106999 -32150531 + B2_Mm2 SINE B2 2 181 -14 1 1264 5261 133 65 80 chr12 89107130 89107652 -32149878 + L1_Mus3 LINE L1 5599 6141 -497 1 1264 401 35 18 0 chr12 89107652 89107709 -32149821 - LTRIS4 LTR ERV1 -448 59 2 1 1264 5261 133 65 80 chr12 89107709 89108164 -32149366 + L1_Mus3 LINE L1 6142 6616 -22 1 1264 696 117 9 0 chr12 89108164 89108275 -32149255 + B1_Mus1 SINE Alu 37 148 0 1 1264 548 108 21 0 chr12 89108288 89108381 -32149149 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1 1264 351 0 0 0 chr12 89108407 89108446 -32149084 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1 1264 264 59 0 0 chr12 89108446 89108480 -32149050 + (GGA)n Simple_repeat Simple_repeat 2 35 0 1 1264 1137 85 0 0 chr12 89108480 89108656 -32148874 + (GAA)n Simple_repeat Simple_repeat 3 178 0 1 1264 4416 176 85 42 chr12 89108953 89110135 -32147395 - ORR1A2-int LTR MaLR -783 1180 1 1 1264 1711 194 6 6 chr12 89110135 89110457 -32147073 - ORR1A2 LTR MaLR 0 327 6 1 1264 638 230 6 32 chr12 89111077 89111234 -32146296 + B3 SINE B2 64 216 0 1 1264 390 279 101 0 chr12 89111280 89111409 -32146121 - RSINE1 SINE B4 -4 161 20 1 1264 1025 136 0 0 chr12 89111621 89111768 -32145762 - B1_Mm SINE Alu 0 147 1 1 1264 28 29 0 0 chr12 89111772 89111807 -32145723 + AT_rich Low_complexity Low_complexity 1 35 0 1 1264 317 141 0 4 chr12 89111820 89111884 -32145646 - B2_Mm2 SINE B2 -108 108 47 1 1264 604 254 17 0 chr12 89111897 89112070 -32145460 - B2_Mm1t SINE B2 -17 176 1 1 1264 1106 88 0 0 chr12 89112210 89112357 -32145173 - B1_Mus2 SINE Alu 0 147 1 1 1264 406 223 19 68 chr12 89112386 89112545 -32144985 + ORR1B1 LTR MaLR 1 203 -191 1 1264 382 245 19 19 chr12 89112550 89112658 -32144872 + B1_Mus1 SINE Alu 39 146 -2 1 1264 371 267 68 17 chr12 89112975 89113093 -32144437 + ORR1B1 LTR MaLR 255 378 -1 1 1264 333 222 14 0 chr12 89113408 89113480 -32144050 + B3A SINE B2 2 74 -124 1 1264 746 182 33 13 chr12 89113480 89113630 -32143900 + Lx7 LINE L1 7181 7333 -363 1 1264 585 246 28 39 chr12 89113878 89114060 -32143470 - B2_Mm2 SINE B2 -14 181 2 1 1264 1950 140 12 0 chr12 89114312 89114641 -32142889 + L1_Mus3 LINE L1 6302 6634 -4 1 1264 945 99 8 0 chr12 89116785 89116916 -32140614 - B1_Mm SINE Alu -14 133 2 1 1264 1316 107 27 0 chr12 89116917 89117104 -32140426 - B2_Mm2 SINE B2 -3 192 1 1 1264 291 324 29 19 chr12 89117147 89117251 -32140279 - B3A SINE B2 -7 191 87 1 1264 995 212 44 32 chr12 89117922 89118171 -32139359 - ORR1D1 LTR MaLR -1 373 122 1 1264 7719 72 0 7 chr12 89118171 89118996 -32138534 + L1_Mus1 LINE L1 5588 6412 -155 1 1264 1577 188 39 76 chr12 89118996 89119404 -32138126 + RLTR9C LTR ERVK 1 393 0 1 1264 7719 72 0 7 chr12 89119404 89119565 -32137965 + L1_Mus1 LINE L1 6413 6567 0 1 1264 762 84 0 0 chr12 89119576 89119683 -32137847 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 1 1264 3133 17 0 0 chr12 89119683 89120029 -32137501 - ORR1A0 LTR MaLR 0 346 1 1 1264 14035 57 8 2 chr12 89120029 89121810 -32135720 - ORR1A0-int LTR MaLR 0 1792 1 1 1264 2858 47 3 0 chr12 89121810 89122154 -32135376 - ORR1A0 LTR MaLR 0 346 2 1 1264 624 27 0 0 chr12 89122154 89122228 -32135302 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 1 1264 666 179 7 56 chr12 89122229 89122371 -32135159 - ORR1D1 LTR MaLR -237 137 3 1 1264 447 325 47 50 chr12 89122789 89123022 -32134508 + MTD LTR MaLR 4 242 -128 1 1264 1657 205 18 3 chr12 89123139 89123477 -32134053 + ORR1C1 LTR MaLR 1 343 -35 1 1264 189 175 0 0 chr12 89123588 89123628 -32133902 + (TTGG)n Simple_repeat Simple_repeat 1 40 0 1 1264 402 202 45 0 chr12 89123633 89123722 -32133808 - B1F1 SINE Alu -9 140 48 1 1264 192 77 0 0 chr12 89124995 89125021 -32132509 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1264 408 292 6 27 chr12 89125037 89125220 -32132310 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1264 788 159 203 0 chr12 89125265 89125447 -32132083 + MTD LTR MaLR 201 419 0 1 1264 2087 155 12 87 chr12 89125631 89126056 -32131474 - ORR1B1 LTR MaLR 0 394 2 1 1264 546 16 0 0 chr12 89127356 89127419 -32130111 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 1 1264 207 323 0 15 chr12 89127524 89127590 -32129940 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1264 849 183 28 11 chr12 89128242 89128419 -32129111 + B2_Mm2 SINE B2 2 181 -14 1 19 3101 91 17 20 chr12 89128551 89129011 -32128519 + L1_Mus3 LINE L1 5599 6057 -581 1 1265 1007 193 10 10 chr12 89129011 89129210 -32128320 - ORR1A2 LTR MaLR -123 204 6 1 1265 458 273 14 34 chr12 89129829 89129960 -32127570 + B3 SINE B2 64 194 -22 1 1265 225 94 0 0 chr12 89129960 89129992 -32127538 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1265 458 273 14 34 chr12 89129992 89130008 -32127522 + B3 SINE B2 195 208 -8 1 1265 395 302 101 0 chr12 89130051 89130180 -32127350 - RSINE1 SINE B4 -4 161 20 1 1265 318 26 0 0 chr12 89130376 89130415 -32127115 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1265 907 145 0 0 chr12 89130415 89130560 -32126970 - B1_Mm SINE Alu -2 145 1 1 1265 310 160 0 5 chr12 89130609 89130674 -32126856 - B2_Mm2 SINE B2 -107 109 47 1 1265 563 257 18 0 chr12 89130686 89130857 -32126673 - B2_Mm1a SINE B2 -16 177 4 1 1265 558 108 0 0 chr12 89130997 89131080 -32126450 - B1_Mus2 SINE Alu -64 83 1 1 1265 432 167 136 71 chr12 89131117 89131272 -32126258 + ORR1B1 LTR MaLR 39 203 -191 1 1265 351 269 28 0 chr12 89131276 89131384 -32126146 + B1_Mus1 SINE Alu 38 148 0 1 1265 609 14 0 0 chr12 89131635 89131705 -32125825 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 1 1265 345 288 47 24 chr12 89131725 89131866 -32125664 + ORR1B1 LTR MaLR 256 405 -14 1 1265 378 206 14 0 chr12 89132178 89132251 -32125279 + B3A SINE B2 1 74 -124 1 1265 728 203 34 7 chr12 89132251 89132400 -32125130 + Lx7 LINE L1 7181 7333 -363 1 1265 721 222 12 24 chr12 89132664 89132830 -32124700 - B2_Mm2 SINE B2 -30 165 2 1 1265 2054 137 9 0 chr12 89133083 89133405 -32124125 + L1_Mus3 LINE L1 6302 6626 -12 1 1265 917 120 8 0 chr12 89135550 89135683 -32121847 - B1_Mm SINE Alu -12 135 2 1 1265 490 106 52 21 chr12 89135684 89135780 -32121750 - B2_Mm2 SINE B2 0 195 97 1 1265 728 135 8 0 chr12 89135783 89135909 -32121621 - Lx2 LINE L1 -96 6901 6775 1 1265 4104 155 24 2 chr12 89135907 89136618 -32120912 - Lx2 LINE L1 -352 6645 5923 1 1265 363 362 20 29 chr12 89136936 89137280 -32120250 - MuRRS4-int LTR ERV1 -3357 1706 1366 1 1265 1191 184 22 30 chr12 89137954 89138223 -32119307 + RMER2 LTR ERV1 301 567 0 1 1265 250 338 29 29 chr12 89139742 89139879 -32117651 + MuRRS4-int LTR ERV1 1301 1437 -3626 1 1265 464 213 229 50 chr12 89139953 89140215 -32117315 - RLTR6_Mm LTR ERV1 -70 584 276 1 1265 797 136 6 99 chr12 89140228 89140400 -32117130 - RLTR6_Mm LTR ERV1 -498 156 1 1 1265 17119 58 24 22 chr12 89140400 89142761 -32114769 - MMVL30-int LTR ERV1 0 3698 960 1 1265 4874 109 30 25 chr12 89142832 89143595 -32113935 - MMVL30-int LTR ERV1 -2224 1474 708 1 1265 1043 201 62 51 chr12 89143628 89143960 -32113570 - MMVL30-int LTR ERV1 -7105 347 25 1 1265 550 195 220 30 chr12 89143978 89144242 -32113288 - RLTR6_Mm LTR ERV1 -65 589 276 1 1265 797 136 6 99 chr12 89144255 89144427 -32113103 - RLTR6_Mm LTR ERV1 -498 156 1 1 1265 4513 137 4 3 chr12 89144953 89145670 -32111860 + Lx2 LINE L1 5923 6645 -352 1 1265 1249 167 5 0 chr12 89145668 89145890 -32111640 + Lx2 LINE L1 6775 6997 0 1 1265 433 356 51 5 chr12 89146209 89146426 -32111104 + RLTR4_MM-int LTR ERV1 4006 4232 -3369 1 1265 6414 71 35 3 chr12 89146582 89147687 -32109843 + L1Md_F2 LINE L1 5386 6543 -39 1 1265 3595 199 35 33 chr12 89147692 89148641 -32108889 + RLTR13A2 LTR ERVK 8 958 0 1 1265 291 54 0 0 chr12 89148670 89148707 -32108823 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1265 1144 127 11 22 chr12 89149095 89149280 -32108250 - B2_Mm2 SINE B2 -11 184 2 1 1265 180 0 0 0 chr12 89150769 89150789 -32106741 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1265 267 330 29 19 chr12 89151127 89151232 -32106298 + B3A SINE B2 87 192 -6 1 1265 1295 110 28 0 chr12 89151274 89151456 -32106074 + B2_Mm2 SINE B2 1 187 -8 1 1265 1008 91 0 0 chr12 89151467 89151599 -32105931 + B1_Mm SINE Alu 2 133 -14 1 1265 6963 61 0 0 chr12 89152367 89153508 -32104022 - L1_Mm LINE L1 -3725 2161 924 1 1265 18473 61 48 0 chr12 89153506 89156299 -32101231 + L1_Mm LINE L1 2153 5592 -297 1 1265 9115 8 0 0 chr12 89156299 89157295 -32100235 + L1Md_T LINE L1 5587 6582 0 1 1265 2004 140 9 0 chr12 89158717 89159039 -32098491 - L1_Mus3 LINE L1 -12 6626 6302 1 1265 589 276 6 24 chr12 89159290 89159457 -32098073 + B2_Mm2 SINE B2 2 165 -30 1 1265 731 189 14 7 chr12 89159724 89159863 -32097667 - Lx7 LINE L1 -363 7333 7194 2 1265 340 222 14 0 chr12 89159872 89159944 -32097586 - B3A SINE B2 -124 74 2 2 1265 398 269 47 21 chr12 89160261 89160405 -32097125 - MTE2a LTR MaLR -1 378 219 2 1265 720 0 0 0 chr12 89160423 89160503 -32097027 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 2 1265 365 294 18 0 chr12 89160749 89160858 -32096672 - B1_Mus1 SINE Alu 0 148 38 2 1265 376 181 136 71 chr12 89160862 89161017 -32096513 - MTE2a LTR MaLR -191 203 39 2 1265 578 84 0 0 chr12 89161054 89161137 -32096393 + B1_Mus2 SINE Alu 1 83 -64 2 1265 392 216 40 72 chr12 89161137 89161179 -32096351 + B4 SINE B4 86 206 -86 2 1265 655 244 18 0 chr12 89161278 89161446 -32096084 + B2_Mm1t SINE B2 4 174 -19 2 1265 310 124 319 71 chr12 89161460 89161573 -32095957 + B2_Mm2 SINE B2 47 188 -5 2 1265 1038 109 0 7 chr12 89161575 89161722 -32095808 + B1_Mm SINE Alu 1 146 -1 2 1265 180 167 0 0 chr12 89162036 89162084 -32095446 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1265 306 125 0 0 chr12 89162118 89162166 -32095364 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1265 490 260 16 8 chr12 89162169 89162297 -32095233 - B3 SINE B2 -24 192 64 2 1265 1806 178 6 6 chr12 89162916 89163238 -32094292 + ORR1A2 LTR MaLR 6 327 0 2 1265 2043 188 31 77 chr12 89163238 89163761 -32093769 + ORR1A2-int LTR MaLR 1 499 -1293 2 1265 180 0 0 0 chr12 89163835 89163855 -32093675 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1265 2131 165 12 40 chr12 89164072 89164476 -32093054 - ORR1B1 LTR MaLR 0 394 2 2 1265 207 323 0 15 chr12 89165891 89165957 -32091573 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1265 980 148 22 22 chr12 89166610 89166790 -32090740 + B2_Mm2 SINE B2 2 181 -14 2 1265 3852 118 0 15 chr12 89166920 89167505 -32090025 + L1_Mus3 LINE L1 5599 6174 -464 2 1265 2981 107 21 57 chr12 89167505 89167713 -32089817 - LTRIS4 LTR ERV1 0 507 325 2 1265 2583 30 0 0 chr12 89167713 89168011 -32089519 - L1Md_T LINE L1 -1 6581 6284 2 1265 2981 107 21 57 chr12 89168011 89168328 -32089202 - LTRIS4 LTR ERV1 -183 324 1 2 1265 2404 148 29 31 chr12 89168328 89168775 -32088755 + L1_Mus3 LINE L1 6171 6616 -22 2 1265 709 108 9 0 chr12 89168775 89168886 -32088644 + B1_Mus1 SINE Alu 37 148 0 2 1265 492 132 0 0 chr12 89168898 89168981 -32088549 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 2 1265 2331 153 21 12 chr12 89169360 89169842 -32087688 - ORR1A3-int LTR MaLR -760 1203 718 2 1265 365 104 0 193 chr12 89169801 89169884 -32087646 - MT2B LTR ERVL -314 287 221 2 1265 5474 109 1 22 chr12 89169884 89170659 -32086871 - SRV_MM-int LTR ERVK -4073 2094 1336 2 1265 2380 152 24 0 chr12 89170669 89171043 -32086487 - SRV_MM-int LTR ERVK -5157 1010 628 2 1265 1594 222 54 3 chr12 89171329 89171721 -32085809 + RMER4B LTR ERVK 10 421 -164 2 1265 3827 129 45 23 chr12 89171798 89173056 -32084474 + L1Md_Gf LINE L1 412 1722 -4164 2 1265 2232 102 227 44 chr12 89173165 89173646 -32083884 + RLTR6_Mm LTR ERV1 37 605 -49 2 1265 68879 13 14 0 chr12 89173646 89181319 -32076211 + RLTR6-int LTR ERV1 1 7778 0 2 1265 2095 105 238 44 chr12 89181428 89181887 -32075643 + RLTR6_Mm LTR ERV1 37 584 -70 2 1265 2200 24 0 0 chr12 89181887 89182142 -32075388 + L1Md_Gf LINE L1 1719 1973 -3913 2 1265 20891 48 0 0 chr12 89182142 89184686 -32072844 + L1Md_Gf LINE L1 3046 5589 -297 2 1265 3584 155 47 23 chr12 89184683 89185325 -32072205 - Lx2 LINE L1 -70 6927 6271 2 1265 384 304 0 67 chr12 89185431 89185551 -32071979 + B1_Mur1 SINE Alu 6 117 -32 2 1265 309 229 216 10 chr12 89185654 89185751 -32071779 + B3 SINE B2 64 180 -36 2 1265 241 231 39 0 chr12 89185745 89185797 -32071733 + B1F1 SINE Alu 88 141 -8 2 1265 249 226 0 114 chr12 89185918 89185988 -32071542 - PB1 SINE Alu -19 108 47 2 1265 587 245 29 0 chr12 89186480 89186619 -32070911 + ID_B1 SINE B4 73 215 -9 2 1265 262 304 114 0 chr12 89186621 89186700 -32070830 + RSINE1 SINE B4 1 88 -77 2 1265 207 0 0 0 chr12 89186700 89186723 -32070807 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2 1265 599 267 100 25 chr12 89186823 89187023 -32070507 + B3 SINE B2 2 216 0 2 1265 336 171 0 0 chr12 89187473 89187555 -32069975 + T-rich Low_complexity Low_complexity 1 82 0 2 1265 1092 71 21 0 chr12 89187556 89187697 -32069833 - B1_Mm SINE Alu 0 147 4 2 1265 436 244 102 39 chr12 89187728 89187856 -32069674 + B1_Mur2 SINE Alu 5 140 -9 2 1265 406 176 19 47 chr12 89187996 89188103 -32069427 + B1_Mur3 SINE Alu 14 117 -32 2 1265 405 0 0 0 chr12 89188103 89188148 -32069382 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1265 260 307 0 51 chr12 89188336 89188415 -32069115 - ID_B1 SINE B4 -26 198 124 2 1265 575 240 45 13 chr12 89188420 89188576 -32068954 - URR1A DNA MER1_type -6 220 60 2 1265 228 365 61 0 chr12 89188718 89188833 -32068697 - B1F1 SINE Alu -20 129 8 2 1265 3178 131 18 121 chr12 89189035 89189772 -32067758 - RLTR22_Mur LTR ERVK -822 1026 366 2 1265 1741 194 72 21 chr12 89189805 89190236 -32067294 + MTC-int LTR MaLR 2 454 -804 2 1265 550 282 8 0 chr12 89190263 89190394 -32067136 + B3A SINE B2 45 176 -22 2 1265 296 287 58 0 chr12 89191358 89191445 -32066085 + B1_Mm SINE Alu 7 98 -49 2 1265 916 192 25 149 chr12 89191814 89192182 -32065348 + RLTRETN_Mm LTR ERVK 1 322 0 2 1265 216 0 0 0 chr12 89192194 89192218 -32065312 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 2 1265 353 262 3 6 chr12 89192525 89192624 -32064906 - ORR1A2 LTR MaLR -179 150 54 2 1265 293 19 55 18 chr12 89193123 89193178 -32064352 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 2 1265 3311 173 10 3 chr12 89193178 89193844 -32063686 - Lx3C LINE L1 -601 5981 5319 2 1265 1230 225 140 12 chr12 89193831 89194159 -32063371 + Lx3C LINE L1 6607 6976 0 2 1265 740 213 21 32 chr12 89194480 89194669 -32062861 + B2_Mm2 SINE B2 1 187 -8 2 1265 533 230 7 0 chr12 89194767 89194919 -32062611 + (TA)n Simple_repeat Simple_repeat 1 153 0 2 1265 243 103 0 0 chr12 89195102 89195141 -32062389 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1265 471 278 7 65 chr12 89195949 89196103 -32061427 + B1_Mus1 SINE Alu 3 147 -1 2 1265 31073 87 57 9 chr12 89199430 89205133 -32052397 + L1Md_F3 LINE L1 206 6194 -390 2 1265 3065 222 77 26 chr12 89205155 89206081 -32051449 - ORR1A2-int LTR MaLR -990 973 1 2 1265 1610 206 6 6 chr12 89206081 89206403 -32051127 - ORR1A2 LTR MaLR 0 327 6 2 1265 671 233 7 7 chr12 89207020 89207171 -32050359 + B3 SINE B2 64 214 -2 2 1265 427 287 101 0 chr12 89207221 89207350 -32050180 - RSINE1 SINE B4 -4 161 20 2 1265 994 131 0 7 chr12 89207565 89207711 -32049819 - B1_Mm SINE Alu -2 145 1 2 1265 281 152 319 71 chr12 89207713 89207826 -32049704 - B2_Mm2 SINE B2 -5 188 47 2 1265 1060 109 0 7 chr12 89208316 89208464 -32049066 - B1_Mm SINE Alu 0 147 1 2 1265 317 112 313 70 chr12 89208466 89208581 -32048949 - B2_Mm2 SINE B2 -3 190 47 2 1265 693 226 18 0 chr12 89208595 89208763 -32048767 - B2_Mm1t SINE B2 -19 174 4 2 1265 459 181 0 0 chr12 89208903 89208986 -32048544 - B1_Mus2 SINE Alu -64 83 1 2 1265 423 179 129 65 chr12 89209023 89209178 -32048352 + ORR1B1 LTR MaLR 39 203 -191 2 1265 368 262 37 0 chr12 89209182 89209289 -32048241 + B1_Mus1 SINE Alu 38 148 0 2 1265 981 104 0 0 chr12 89209531 89209675 -32047855 + (TTCC)n Simple_repeat Simple_repeat 2 145 0 2 1265 413 261 47 21 chr12 89209693 89209837 -32047693 + ORR1B1 LTR MaLR 219 378 -1 2 1265 387 206 14 0 chr12 89210153 89210226 -32047304 + B3A SINE B2 1 74 -124 2 1265 802 182 34 7 chr12 89210226 89210375 -32047155 + Lx7 LINE L1 7181 7333 -363 2 1265 436 210 9 48 chr12 89210641 89210746 -32046784 - B2_Mm2 SINE B2 -30 165 65 2 1265 1596 52 0 0 chr12 89210976 89211169 -32046361 - B2_Mm1a SINE B2 0 193 1 2 1265 1998 134 12 0 chr12 89211245 89211566 -32045964 + L1_Mus3 LINE L1 6302 6626 -12 2 1265 41663 12 0 7 chr12 89212204 89218452 -32039078 - L1Md_A LINE L1 -2 6580 382 2 1265 957 105 8 0 chr12 89219984 89220117 -32037413 - B1_Mm SINE Alu -12 135 2 2 1265 529 106 53 0 chr12 89220121 89220215 -32037315 - B2_Mm2 SINE B2 0 195 97 2 1265 771 119 8 0 chr12 89220218 89220344 -32037186 - Lx2 LINE L1 -96 6901 6775 2 1265 4503 132 3 6 chr12 89220342 89221061 -32036469 - Lx2 LINE L1 -352 6645 5923 2 1265 462 362 27 34 chr12 89221381 89221790 -32035740 - MuRRS4-int LTR ERV1 -3357 1706 1301 2 1265 3111 137 60 22 chr12 89223201 89223636 -32033894 - RMER2 LTR ERV1 0 567 111 2 1265 3283 74 5 0 chr12 89223636 89224030 -32033500 + MTA_Mm LTR MaLR 1 396 0 2 1265 3111 137 60 22 chr12 89224030 89224140 -32033390 - RMER2 LTR ERV1 -457 110 1 2 1265 4608 172 22 5 chr12 89224140 89224963 -32032567 + ORR1A3-int LTR MaLR 1055 1892 -71 2 1265 1668 206 3 15 chr12 89224963 89225293 -32032237 + ORR1A3 LTR MaLR 1 326 0 2 1265 379 125 0 0 chr12 89225672 89225728 -32031802 - ORR1B2 LTR MaLR 0 367 312 2 1265 4862 82 0 2 chr12 89225735 89226333 -32031197 - L1_Mus2 LINE L1 -4 6562 5966 2 1265 1408 108 5 0 chr12 89226333 89226536 -32030994 - L1_Mm LINE L1 -3392 2491 2288 2 1265 2916 112 13 2 chr12 89227422 89227871 -32029659 - L1_Mm LINE L1 -3573 2310 1857 2 1265 441 287 35 14 chr12 89228648 89228793 -32028737 + B3 SINE B2 64 211 -5 2 1265 326 262 200 31 chr12 89228841 89228971 -32028559 - RSINE1 SINE B4 0 165 14 2 1265 429 138 305 17 chr12 89229126 89229244 -32028286 - B2_Mm2 SINE B2 -1 194 43 2 1265 569 233 38 0 chr12 89229276 89229409 -32028121 - B2_Mm1t SINE B2 -48 145 8 2 1265 366 260 133 67 chr12 89229530 89229695 -32027835 + ORR1B1 LTR MaLR 39 214 -180 2 1265 410 272 19 0 chr12 89229689 89229792 -32027738 + B1_Mus1 SINE Alu 39 143 -5 2 1265 7101 89 21 11 chr12 89230253 89230896 -32026634 - RLTR13D5 LTR ERVK 0 1023 373 2 1265 7588 26 5 0 chr12 89230896 89231714 -32025816 + RLTR13B2 LTR ERVK 1 822 0 2 1265 7101 89 21 11 chr12 89231714 89232083 -32025447 - RLTR13D5 LTR ERVK -651 372 1 2 1265 339 182 0 0 chr12 89232571 89232648 -32024882 + CT-rich Low_complexity Low_complexity 1 77 0 2 1265 367 118 5 20 chr12 89233424 89233496 -32024034 + MT-int LTR MaLR 668 730 -368 2 1265 1279 135 20 8 chr12 89233581 89233827 -32023703 + MT-int LTR MaLR 739 963 -135 2 1265 1186 198 14 5 chr12 89234455 89234663 -32022867 - B3 SINE B2 -5 211 2 3 1265 403 266 45 82 chr12 89234968 89235124 -32022406 - MTE2a LTR MaLR -1 420 250 3 1265 579 66 0 0 chr12 89235221 89235297 -32022233 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 3 1265 360 287 37 0 chr12 89236135 89236243 -32021287 - B1_Mus1 SINE Alu 0 148 37 3 1265 401 194 15 127 chr12 89236244 89236424 -32021106 - MTE2a LTR MaLR -191 203 1 3 1265 254 104 377 0 chr12 89236723 89236800 -32020730 - RLTR47_MM LTR ERV1 0 532 427 3 1265 1093 125 12 0 chr12 89236800 89236968 -32020562 + B2_Mm1t SINE B2 2 171 -22 3 1265 1652 121 114 3 chr12 89236969 89237268 -32020262 - RLTR47_MM LTR ERV1 -200 332 1 3 1265 629 197 17 17 chr12 89237617 89237736 -32019794 - B1_Mus1 SINE Alu -17 131 13 3 1265 680 181 150 0 chr12 89237762 89237889 -32019641 + B1_Mus1 SINE Alu 3 148 0 3 1265 243 232 18 0 chr12 89237894 89237950 -32019580 - ORR1A4 LTR MaLR 0 329 273 3 1265 1191 184 152 24 chr12 89238082 89238371 -32019159 - ORR1B1 LTR MaLR -32 362 37 3 1265 3843 117 47 9 chr12 89238477 89239036 -32018494 - MT2B2 LTR ERVL -4 580 1 3 1265 570 294 48 0 chr12 89239250 89239396 -32018134 + RSINE1 SINE B4 13 165 0 3 1265 1012 209 46 5 chr12 89239451 89239648 -32017882 - B3 SINE B2 -10 206 2 3 1265 1140 145 97 1 chr12 89239773 89239982 -32017548 - MT2B2 LTR ERVL -261 340 112 3 1265 200 257 39 51 chr12 89240049 89240127 -32017403 + MIRm SINE MIR 110 186 -90 3 1265 306 276 53 0 chr12 89240129 89240205 -32017325 + B4 SINE B4 7 86 -206 3 1265 287 199 0 0 chr12 89240455 89240513 -32017017 + ORR1A2 LTR MaLR 1 58 -269 3 1265 248 169 15 30 chr12 89240513 89240580 -32016950 + T-rich Low_complexity Low_complexity 2 67 0 3 1265 1117 116 0 0 chr12 89240582 89240729 -32016801 - B1_Mm SINE Alu 0 147 1 3 1265 453 207 0 44 chr12 89240731 89240822 -32016708 + ORR1A2 LTR MaLR 46 132 -195 3 1265 2475 193 60 92 chr12 89240849 89241335 -32016195 + L1VL4 LINE L1 322 790 -5568 3 1265 1156 85 0 0 chr12 89241335 89241476 -32016054 + B1_Mus2 SINE Alu 1 141 -6 3 1265 189 0 0 0 chr12 89241477 89241498 -32016032 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 1265 2475 152 24 45 chr12 89241498 89242023 -32015507 + L1VL4 LINE L1 791 1306 -2309 3 1265 1984 183 8 6 chr12 89242030 89242387 -32015143 + Lx2A1 LINE L1 6331 6688 -320 3 1265 1102 219 59 91 chr12 89242387 89242759 -32014771 + RMER16 LTR ERVK 174 533 0 3 1265 396 188 0 0 chr12 89242759 89242828 -32014702 - Lx8 LINE L1 -727 6746 6678 3 1265 9437 60 1 5 chr12 89242996 89244520 -32013010 + L1Md_F3 LINE L1 4679 6194 -390 3 1265 3496 206 92 26 chr12 89244532 89245458 -32012072 - ORR1A2-int LTR MaLR -976 987 1 3 1265 1830 196 3 6 chr12 89245458 89245781 -32011749 - ORR1A2 LTR MaLR 0 327 6 3 1265 21 0 0 0 chr12 89246350 89246371 -32011159 + AT_rich Low_complexity Low_complexity 1 21 0 3 1265 732 240 7 7 chr12 89246399 89246550 -32010980 + B3 SINE B2 64 214 -2 3 1265 1122 109 0 7 chr12 89246922 89247070 -32010460 - B1_Mm SINE Alu 0 147 1 3 1265 339 113 316 70 chr12 89247072 89247186 -32010344 - B2_Mm1t SINE B2 -4 189 48 3 1265 768 220 18 0 chr12 89247200 89247368 -32010162 - B2_Mm1t SINE B2 -19 174 4 3 1265 545 157 0 0 chr12 89247509 89247592 -32009938 - B1_Mus2 SINE Alu -64 83 1 3 1265 476 184 115 64 chr12 89247629 89247786 -32009744 + ORR1B1 LTR MaLR 39 203 -191 3 1265 403 262 37 0 chr12 89247790 89247897 -32009633 + B1_Mus1 SINE Alu 38 148 0 3 1265 684 0 0 0 chr12 89248139 89248215 -32009315 + (TTCC)n Simple_repeat Simple_repeat 2 77 0 3 1265 413 261 47 72 chr12 89248235 89248376 -32009154 + ORR1B1 LTR MaLR 256 405 -14 3 1265 401 219 14 0 chr12 89248692 89248765 -32008765 + B3A SINE B2 1 74 -124 3 1265 727 191 40 7 chr12 89248765 89248913 -32008617 + Lx7 LINE L1 7181 7333 -363 3 1265 480 229 9 44 chr12 89249179 89249293 -32008237 - B2_Mm2 SINE B2 -30 165 56 3 1265 2071 138 10 0 chr12 89249576 89249888 -32007642 + L1_Mus3 LINE L1 6312 6626 -12 3 1265 28240 77 3 0 chr12 89251706 89255426 -32002104 + L1Md_F2 LINE L1 1854 5585 -298 3 1265 8531 51 2 0 chr12 89255427 89256419 -32001111 + L1Md_F2 LINE L1 5587 6580 -2 3 1265 1824 179 19 3 chr12 89257624 89257944 -31999586 - L1_Mus3 LINE L1 -12 6626 6302 3 1265 757 245 6 24 chr12 89258196 89258363 -31999167 + B2_Mm2 SINE B2 2 165 -30 3 1265 699 193 43 0 chr12 89258635 89258775 -31998755 - Lx7 LINE L1 -370 7326 7181 3 1265 394 206 14 0 chr12 89258775 89258848 -31998682 - B3A SINE B2 -124 74 1 3 1265 327 233 148 71 chr12 89259164 89259293 -31998237 - ORR1B1 LTR MaLR -14 405 256 3 1265 356 271 37 18 chr12 89259582 89259691 -31997839 - B1_Mus1 SINE Alu 0 148 38 3 1265 497 160 134 83 chr12 89259695 89259852 -31997678 - ORR1B1 LTR MaLR -191 203 39 3 1265 553 110 12 0 chr12 89259889 89259971 -31997559 + B1_Mus2 SINE Alu 1 83 -64 3 1266 725 241 18 0 chr12 89260111 89260281 -31997249 + B2_Mm1t SINE B2 4 176 -17 3 1266 331 118 298 91 chr12 89260294 89260407 -31997123 + B2_Mm2 SINE B2 47 186 -7 3 1266 1049 137 7 0 chr12 89260407 89260553 -31996977 + B1_Mm SINE Alu 1 147 0 3 1266 240 188 0 0 chr12 89260867 89260915 -31996615 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1266 27 0 0 0 chr12 89260930 89260957 -31996573 + AT_rich Low_complexity Low_complexity 1 27 0 3 1266 565 273 7 21 chr12 89260967 89261109 -31996421 - B3 SINE B2 -13 203 64 3 1266 2014 184 3 6 chr12 89261721 89262049 -31995481 + ORR1A2 LTR MaLR 1 327 0 3 1266 1474 155 0 31 chr12 89262049 89262283 -31995247 + ORR1A2-int LTR MaLR 1 234 -1729 3 1266 264 30 0 0 chr12 89262283 89262316 -31995214 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1266 1474 155 0 31 chr12 89262316 89262341 -31995189 + ORR1A2-int LTR MaLR 235 252 -1711 3 1266 2390 193 15 100 chr12 89262347 89262568 -31994962 + ORR1B1-int LTR MaLR 19 236 -1727 3 1266 288 0 0 0 chr12 89262568 89262600 -31994930 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1266 2390 193 15 100 chr12 89262600 89262970 -31994560 + ORR1B1-int LTR MaLR 237 560 -1403 3 1266 578 189 34 59 chr12 89262960 89263079 -31994451 + MT2B LTR ERVL 152 211 -390 3 1266 249 292 121 30 chr12 89263079 89263178 -31994352 + B1F1 SINE Alu 3 110 -39 3 1266 470 247 121 64 chr12 89263342 89263515 -31994015 + ORR1B1 LTR MaLR 39 221 -173 3 1266 428 224 28 18 chr12 89263500 89263609 -31993921 + B1_Mus1 SINE Alu 37 146 -2 3 1266 377 255 58 19 chr12 89263928 89264032 -31993498 + ORR1B1 LTR MaLR 255 362 -17 3 1266 353 225 14 0 chr12 89264078 89264149 -31993381 + B3A SINE B2 3 74 -124 3 1266 759 193 7 0 chr12 89264158 89264293 -31993237 + Lx7 LINE L1 7194 7329 -367 3 1266 489 194 34 122 chr12 89264550 89264570 -31992960 - B2_Mm2 SINE B2 -9 186 168 3 1266 1176 148 11 0 chr12 89264570 89264752 -31992778 + B2_Mm1t SINE B2 2 185 -8 3 1266 489 194 34 122 chr12 89264752 89264878 -31992652 - B2_Mm2 SINE B2 -28 167 53 3 1266 28 29 0 0 chr12 89266006 89266041 -31991489 + AT_rich Low_complexity Low_complexity 1 35 0 3 1266 1174 78 0 0 chr12 89266144 89266286 -31991244 + B1_Mus1 SINE Alu 1 142 -6 3 1266 603 0 0 0 chr12 89266288 89266355 -31991175 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1266 342 91 0 0 chr12 89267913 89267968 -31989562 + (CAG)n Simple_repeat Simple_repeat 2 56 0 3 1266 1191 171 11 75 chr12 89268401 89268666 -31988864 + RLTRETN_Mm LTR ERVK 74 321 -1 3 1266 24025 60 2 29 chr12 89268668 89271887 -31985643 + MMETn-int LTR ERVK 2 3134 -1710 3 1266 10320 124 13 29 chr12 89271944 89273655 -31983875 + MMETn-int LTR ERVK 3219 5714 -2503 3 1266 1947 122 9 62 chr12 89273655 89273995 -31983535 + RLTRETN_Mm LTR ERVK 1 322 0 3 1266 3329 142 38 2 chr12 89273995 89274526 -31983004 + Lx2 LINE L1 6095 6644 -353 3 1266 596 130 10 0 chr12 89274525 89274625 -31982905 + Lx2 LINE L1 6775 6875 -122 3 1266 490 133 63 11 chr12 89274627 89274735 -31982795 + B2_Mm2 SINE B2 71 189 -6 3 1266 949 121 15 0 chr12 89274736 89274868 -31982662 + B1_Mus2 SINE Alu 2 135 -12 3 1266 1246 126 11 11 chr12 89276196 89276381 -31981149 + B2_Mm2 SINE B2 2 186 -9 3 1266 1076 107 0 0 chr12 89276383 89276523 -31981007 - B1_Mus2 SINE Alu -5 142 3 3 1266 1225 142 5 31 chr12 89276523 89276719 -31980811 - B2_Mm1t SINE B2 -2 191 1 3 1266 2636 40 3 30 chr12 89276719 89277052 -31980478 + L1Md_F2 LINE L1 6122 6445 -137 3 1266 246 95 0 0 chr12 89277193 89277235 -31980295 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1266 467 78 0 13 chr12 89277319 89277397 -31980133 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 3 1266 625 204 41 34 chr12 89277416 89277563 -31979967 - B1_Mur4 SINE Alu -1 149 2 3 1266 348 220 84 14 chr12 89278408 89278531 -31978999 + B1_Mus2 SINE Alu 1 149 0 3 1266 237 108 0 0 chr12 89278537 89278574 -31978956 + (GGA)n Simple_repeat Simple_repeat 2 38 0 3 1266 885 212 29 39 chr12 89278613 89278819 -31978711 + B3 SINE B2 8 211 -5 3 1266 4467 85 8 7 chr12 89279254 89279867 -31977663 - L1_Mus2 LINE L1 0 6566 5953 3 1266 1166 156 5 36 chr12 89280422 89280641 -31976889 + Lx3B LINE L1 6762 6973 0 3 1266 313 325 0 0 chr12 89280692 89280772 -31976758 - LTR86A1 LTR ERVL -433 80 1 3 1266 29 28 0 0 chr12 89280878 89280914 -31976616 + AT_rich Low_complexity Low_complexity 1 36 0 3 1266 261 83 0 0 chr12 89281329 89281365 -31976165 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1266 216 162 0 0 chr12 89281365 89281402 -31976128 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 3 1266 3381 154 29 35 chr12 89281491 89282123 -31975407 + RLTR5_Mm LTR ERV1 1 628 0 3 1266 1542 131 11 35 chr12 89282189 89282475 -31975055 + Lx2A1 LINE L1 6729 7007 -1 3 1266 399 266 6 55 chr12 89282520 89282617 -31974913 + ORR1A4 LTR MaLR 3 99 -230 3 1266 186 43 0 0 chr12 89282617 89282640 -31974890 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 3 1266 399 266 6 55 chr12 89282640 89282705 -31974825 + ORR1A4 LTR MaLR 100 157 -172 3 1266 454 171 23 0 chr12 89282693 89282781 -31974749 + B1_Mus1 SINE Alu 39 128 -20 3 1266 3891 167 53 24 chr12 89283399 89284268 -31973262 + RLTR13D6 LTR ERVK 1 929 0 3 1266 1360 144 98 7 chr12 89284318 89284605 -31972925 + MT-int LTR MaLR 668 980 -118 3 1266 974 248 19 0 chr12 89285229 89285439 -31972091 - B3 SINE B2 -1 215 2 3 1266 373 238 59 0 chr12 89286019 89286120 -31971410 - B1_Mus1 SINE Alu -5 143 37 3 1266 302 278 6 95 chr12 89286106 89286282 -31971248 - ORR1B1 LTR MaLR -191 203 1 3 1266 350 107 0 21 chr12 89286501 89286609 -31970921 + B2_Mm2 SINE B2 49 190 -5 3 1266 406 277 72 72 chr12 89286766 89286918 -31970612 + RSINE1 SINE B4 13 164 -1 4 1266 528 286 7 7 chr12 89286952 89287093 -31970437 - B3 SINE B2 -5 211 71 4 1266 466 193 25 16 chr12 89287168 89287289 -31970241 + ORR1A3-int LTR MaLR 869 990 -973 4 1266 2448 49 0 3 chr12 89287300 89287626 -31969904 + IAPEY2_LTR LTR ERVK 33 357 0 4 1266 715 127 57 51 chr12 89287626 89287784 -31969746 + IAPLTR4_I LTR ERVK 22 180 -1290 4 1266 7804 143 24 76 chr12 89287783 89289219 -31968311 + IAPEY3-int LTR ERVK 524 1885 -5795 4 1266 1529 81 43 0 chr12 89289219 89289430 -31968100 + IAPEY3-int LTR ERVK 2504 2723 -4957 4 1266 457 68 0 0 chr12 89289397 89289456 -31968074 + IAPEY3-int LTR ERVK 4852 4910 -2770 4 1266 3337 84 56 0 chr12 89289456 89290189 -31967341 + IAPEY3-int LTR ERVK 6907 7680 0 4 1266 1748 57 0 0 chr12 89290189 89290416 -31967114 + IAPEY2_LTR LTR ERVK 1 227 -130 4 1266 3881 109 40 31 chr12 89290410 89290753 -31966777 + RMER17A LTR ERVK 22 374 -377 4 1266 1191 112 0 0 chr12 89290753 89290932 -31966598 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 4 1266 3881 109 40 31 chr12 89290932 89291296 -31966234 + RMER17A LTR ERVK 375 734 -17 4 1266 1550 202 37 3 chr12 89291335 89291683 -31965847 - RMER2 LTR ERV1 -130 437 78 4 1266 425 186 0 0 chr12 89291680 89291750 -31965780 + RLTR31B_Mm LTR ERVK 488 557 0 4 1266 423 352 51 14 chr12 89291944 89292160 -31965370 - RLTR4_MM-int LTR ERV1 -3354 4247 4024 4 1266 1167 174 9 5 chr12 89292469 89292689 -31964841 - Lx2 LINE L1 -2 6995 6775 4 1266 3885 154 41 35 chr12 89292689 89293408 -31964122 - Lx2 LINE L1 -354 6643 5914 4 1266 470 178 140 0 chr12 89293579 89293686 -31963844 + RLTR47_MM LTR ERV1 199 320 -212 4 1266 1149 128 17 0 chr12 89293686 89293865 -31963665 - B2_Mm1t SINE B2 -10 183 2 4 1266 230 103 359 0 chr12 89293865 89293943 -31963587 + RLTR47_MM LTR ERV1 427 532 0 4 1266 285 214 24 58 chr12 89294245 89294422 -31963108 + ORR1A4 LTR MaLR 1 203 -191 4 1266 329 306 25 3 chr12 89294396 89294535 -31962995 + B1_Mus1 SINE Alu 6 149 0 4 1266 756 32 0 0 chr12 89295373 89295468 -31962062 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 4 1266 279 274 44 140 chr12 89295586 89295722 -31961808 + MTD LTR MaLR 296 418 -1 4 1266 1017 207 34 5 chr12 89296037 89296241 -31961289 + B3 SINE B2 2 211 -5 4 1266 1148 145 20 12 chr12 89296867 89297114 -31960416 - MT-int LTR MaLR -135 963 742 4 1266 302 145 16 0 chr12 89297199 89297261 -31960269 - MT-int LTR MaLR -368 730 668 4 1266 216 170 0 0 chr12 89298045 89298098 -31959432 + GA-rich Low_complexity Low_complexity 1 53 0 4 1266 7579 88 17 3 chr12 89298588 89299597 -31957933 + RLTR13D5 LTR ERVK 1 1023 0 4 1266 350 259 18 18 chr12 89300052 89300162 -31957368 - B1_Mus1 SINE Alu -2 146 37 4 1266 260 291 19 66 chr12 89300165 89300322 -31957208 - ORR1B1 LTR MaLR -191 203 3 4 1266 476 225 25 16 chr12 89300451 89300573 -31956957 + B2_Mm1t SINE B2 22 144 -49 4 1266 357 125 330 46 chr12 89300610 89300719 -31956811 + B2_Mm1t SINE B2 48 187 -6 4 1266 259 214 233 11 chr12 89300882 89300972 -31956558 + RSINE1 SINE B4 20 129 -36 4 1266 453 272 29 7 chr12 89301053 89301190 -31956340 - B3 SINE B2 -5 211 72 4 1266 2795 106 20 28 chr12 89301972 89302430 -31955100 + L1_Mm LINE L1 1857 2310 -3573 4 1266 207 0 0 0 chr12 89302430 89302453 -31955077 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1266 1391 90 15 0 chr12 89303323 89303524 -31954006 + L1_Mm LINE L1 2288 2491 -3392 4 1266 4689 75 0 7 chr12 89303524 89304129 -31953401 + L1_Mus2 LINE L1 5966 6566 0 4 1266 358 125 0 0 chr12 89304130 89304186 -31953344 + ORR1B2 LTR MaLR 312 367 0 4 1266 1584 191 3 0 chr12 89304564 89304863 -31952667 - ORR1A3 LTR MaLR 0 326 27 4 1266 368 296 0 7 chr12 89305697 89305840 -31951690 + GA-rich Low_complexity Low_complexity 1 142 0 4 1266 662 214 8 0 chr12 89306019 89306171 -31951359 - ORR1A2 LTR MaLR -173 154 11 4 1266 4483 160 26 4 chr12 89306156 89306997 -31950533 - ORR1A2-int LTR MaLR -49 1914 1055 4 1266 3086 147 14 30 chr12 89306998 89307107 -31950423 + RMER2 LTR ERV1 2 110 -457 4 1266 3209 59 3 0 chr12 89307107 89307498 -31950032 - MTA_Mm LTR MaLR 0 396 5 4 1266 3086 147 14 30 chr12 89307498 89307963 -31949567 + RMER2 LTR ERV1 111 567 0 4 1266 278 312 54 58 chr12 89309543 89309856 -31947674 + MuLV-int LTR ERV1 1499 1810 -5796 4 1266 4201 145 8 15 chr12 89310189 89310912 -31946618 + Lx2 LINE L1 5923 6645 -352 4 1266 715 143 8 0 chr12 89310910 89311036 -31946494 + Lx2 LINE L1 6775 6901 -96 4 1266 480 124 56 0 chr12 89311039 89311128 -31946402 + B2_Mm2 SINE B2 97 190 -5 4 1266 860 131 8 0 chr12 89311132 89311262 -31946268 + B1_Mm SINE Alu 5 135 -12 4 1266 21 71 0 0 chr12 89311706 89311748 -31945782 + AT_rich Low_complexity Low_complexity 1 42 0 4 1266 17278 87 2 1 chr12 89312212 89314591 -31942939 + L1_Mm LINE L1 1854 4234 -1649 4 1266 1809 165 12 0 chr12 89314653 89314974 -31942556 - L1_Mus3 LINE L1 -12 6626 6302 4 1266 679 251 6 24 chr12 89315228 89315395 -31942135 + B2_Mm2 SINE B2 2 165 -30 4 1266 698 197 40 7 chr12 89315659 89315807 -31941723 - Lx7 LINE L1 -363 7333 7181 4 1266 390 192 14 0 chr12 89315807 89315880 -31941650 - B3A SINE B2 -124 74 1 4 1266 377 274 50 17 chr12 89316196 89316315 -31941215 - ORR1B1 LTR MaLR -1 378 256 4 1266 275 287 36 27 chr12 89316627 89316738 -31940792 - B1_Mus1 SINE Alu 0 148 37 4 1266 478 147 142 77 chr12 89316741 89316896 -31940634 - ORR1B1 LTR MaLR -191 203 39 4 1266 512 132 0 0 chr12 89316933 89317016 -31940514 + B1_Mus2 SINE Alu 1 83 -64 4 1266 644 231 12 6 chr12 89317157 89317318 -31940212 + B2_Mm1t SINE B2 4 165 -28 4 1266 290 139 310 69 chr12 89317341 89317457 -31940073 + B2_Mm2 SINE B2 47 191 -2 4 1266 1023 122 0 7 chr12 89317459 89317607 -31939923 + B1_Mm SINE Alu 1 147 0 4 1266 289 280 23 47 chr12 89317846 89317932 -31939598 + RSINE1 SINE B4 82 165 0 4 1266 546 263 7 19 chr12 89317986 89318141 -31939389 - B3 SINE B2 0 216 64 4 1266 1582 207 9 6 chr12 89318760 89319076 -31938454 + ORR1A2 LTR MaLR 6 322 -5 4 1266 2492 201 7 38 chr12 89319081 89319659 -31937871 + ORR1A2-int LTR MaLR 1 560 -1403 4 1266 590 196 24 70 chr12 89319626 89319770 -31937760 + MT2B LTR ERVL 133 214 -387 4 1266 241 289 120 30 chr12 89319770 89319870 -31937660 + B1F1 SINE Alu 3 111 -38 4 1266 367 272 0 107 chr12 89320028 89320205 -31937325 + ORR1A2 LTR MaLR 1 158 -171 4 1266 425 206 28 18 chr12 89320190 89320299 -31937231 + B1_Mus1 SINE Alu 37 146 -2 4 1266 373 250 69 10 chr12 89320618 89320719 -31936811 + ORR1A2 LTR MaLR 255 361 -18 4 1266 325 239 14 0 chr12 89320768 89320839 -31936691 + B3A SINE B2 3 74 -124 4 1266 752 200 7 0 chr12 89320848 89320983 -31936547 + Lx7 LINE L1 7194 7329 -367 4 1266 446 188 0 120 chr12 89321238 89321260 -31936270 - B2_Mm2 SINE B2 -7 188 168 4 1266 1136 136 11 16 chr12 89321260 89321447 -31936083 + B2_Mm1t SINE B2 2 187 -6 4 1266 446 188 0 120 chr12 89321447 89321557 -31935973 - B2_Mm2 SINE B2 -28 167 72 4 1266 23 54 0 0 chr12 89322699 89322736 -31934794 + AT_rich Low_complexity Low_complexity 1 37 0 4 1266 429 20 0 0 chr12 89322798 89322848 -31934682 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1266 378 61 0 0 chr12 89324403 89324452 -31933078 + (CAG)n Simple_repeat Simple_repeat 2 50 0 4 1266 1190 125 11 11 chr12 89326013 89326199 -31931331 + B2_Mm2 SINE B2 2 187 -8 4 1266 998 108 0 0 chr12 89326199 89326338 -31931192 - B1_Mus2 SINE Alu -5 142 4 4 1266 715 112 0 0 chr12 89326338 89326454 -31931076 - B2_Mm1a SINE B2 -1 192 77 4 1266 794 94 0 0 chr12 89326459 89326471 -31931059 - B1_Mus2 SINE Alu -29 118 2 4 1266 426 239 57 41 chr12 89326471 89326576 -31930954 - B4 SINE B4 -95 197 87 4 1266 1303 105 5 31 chr12 89326576 89326772 -31930758 - B2_Mm1a SINE B2 -2 191 1 4 1266 3324 74 4 39 chr12 89326772 89327235 -31930295 + L1Md_F2 LINE L1 6122 6568 -14 4 1266 426 239 57 41 chr12 89327235 89327250 -31930280 - B4 SINE B4 -206 86 75 4 1266 7544 10 2 0 chr12 89328579 89329399 -31928131 + RLTR13B2 LTR ERVK 1 822 0 4 1266 1159 111 16 27 chr12 89329401 89329587 -31927943 + ETnERV3-int LTR ERVK 3 186 -5622 4 1266 319 277 0 0 chr12 89329659 89329760 -31927770 + ETnERV3-int LTR ERVK 279 379 -6874 4 1266 605 182 11 154 chr12 89329953 89330141 -31927389 + RLTR6_Mm LTR ERV1 1 161 -493 4 1266 512 191 242 35 chr12 89330149 89330409 -31927121 + RLTR6_Mm LTR ERV1 276 589 -65 4 1266 19700 252 19 12 chr12 89330410 89336711 -31920819 + RLTR6-int LTR ERV1 7 6548 -1230 4 1266 4467 248 43 14 chr12 89336977 89338085 -31919445 + MMERGLN-int LTR ERV1 6416 7556 0 4 1266 605 182 11 154 chr12 89338085 89338273 -31919257 + RLTR6_Mm LTR ERV1 1 161 -493 4 1266 463 197 59 75 chr12 89338281 89338536 -31918994 + RLTR6_Mm LTR ERV1 223 447 0 4 1266 24804 173 34 33 chr12 89338586 89340441 -31917089 + ETnERV3-int LTR ERVK 186 1685 -5568 4 1266 204 40 0 0 chr12 89340441 89340466 -31917064 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 4 1266 24804 101 36 33 chr12 89340466 89343008 -31914522 + ETnERV3-int LTR ERVK 1431 3976 -1832 4 1266 225 0 0 0 chr12 89343008 89343033 -31914497 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 4 1266 24804 108 67 55 chr12 89343033 89344623 -31912907 + ETnERV3-int LTR ERVK 3977 6069 -1175 4 1266 7496 9 5 0 chr12 89344633 89345451 -31912079 + RLTR13B2 LTR ERVK 1 822 0 4 1266 195 69 0 0 chr12 89345501 89345530 -31912000 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 1266 785 90 0 8 chr12 89345611 89345745 -31911785 + (TC)n Simple_repeat Simple_repeat 1 133 0 4 1266 221 0 0 33 chr12 89345745 89345774 -31911756 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1266 640 175 8 38 chr12 89345791 89345922 -31911608 - B1_Mur4 SINE Alu -22 128 2 4 1266 277 289 50 58 chr12 89345814 89345935 -31911595 - B4 SINE B4 -94 198 79 4 1266 1162 156 5 36 chr12 89346829 89347048 -31910482 + Lx3B LINE L1 6762 6973 0 4 1266 21 36 0 0 chr12 89347049 89347077 -31910453 + AT_rich Low_complexity Low_complexity 1 28 0 4 1266 23 0 0 0 chr12 89347285 89347308 -31910222 + AT_rich Low_complexity Low_complexity 1 23 0 4 1266 225 94 0 0 chr12 89347735 89347767 -31909763 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1266 205 162 0 0 chr12 89347767 89347804 -31909726 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 4 1266 3928 126 14 28 chr12 89347893 89348530 -31909000 + RLTR5_Mm LTR ERV1 1 628 0 4 1266 1466 154 11 22 chr12 89348599 89348877 -31908653 + Lx2A1 LINE L1 6733 7007 -1 4 1266 309 250 11 11 chr12 89348922 89349015 -31908515 + ORR1A4 LTR MaLR 3 95 -234 4 1266 351 203 0 0 chr12 89349018 89349092 -31908438 + (TATG)n Simple_repeat Simple_repeat 2 75 0 4 1266 269 184 49 73 chr12 89349137 89349219 -31908311 + MT2B LTR ERVL 185 264 -337 4 1266 517 213 19 0 chr12 89349146 89349254 -31908276 + B1_Mus1 SINE Alu 39 148 0 4 1266 3915 174 52 22 chr12 89349858 89350730 -31906800 + RLTR13D6 LTR ERVK 1 862 -40 4 1266 1408 146 86 7 chr12 89350780 89351070 -31906460 + MT-int LTR MaLR 668 980 -118 4 1266 1039 64 7 0 chr12 89351127 89351268 -31906262 + B1_Mus2 SINE Alu 6 147 0 4 1266 1035 227 14 5 chr12 89351869 89352077 -31905453 - B3 SINE B2 -5 211 2 4 1266 382 228 59 0 chr12 89352661 89352762 -31904768 - B1_Mus1 SINE Alu -5 143 37 4 1266 353 259 6 69 chr12 89352765 89352924 -31904606 - ORR1B1 LTR MaLR -191 203 1 4 1266 377 114 336 19 chr12 89353142 89353249 -31904281 + B2_Mm2 SINE B2 49 189 -6 5 1266 430 286 93 0 chr12 89353406 89353546 -31903984 + RSINE1 SINE B4 13 165 0 5 1266 481 307 7 7 chr12 89353592 89353733 -31903797 - B3 SINE B2 -5 211 71 5 1266 557 182 8 16 chr12 89353814 89353937 -31903593 + ORR1A3-int LTR MaLR 869 990 -973 5 1266 2784 45 62 0 chr12 89353937 89354273 -31903257 + IAPEY2_LTR LTR ERVK 1 357 0 5 1266 7758 141 23 86 chr12 89354273 89355893 -31901637 + IAPEY3-int LTR ERVK 1 1885 -5795 5 1266 1448 81 5 0 chr12 89355893 89356078 -31901452 + IAPEY3-int LTR ERVK 2504 2689 -4991 5 1266 507 34 0 0 chr12 89356071 89356130 -31901400 + IAPEY3-int LTR ERVK 4852 4910 -2770 5 1266 3446 122 16 29 chr12 89356130 89356863 -31900667 + IAPEY3-int LTR ERVK 6907 7581 0 5 1266 1758 48 0 0 chr12 89356863 89357090 -31900440 + IAPEY2_LTR LTR ERVK 1 227 -130 5 1266 3749 102 81 28 chr12 89357084 89357397 -31900133 + RMER17A LTR ERVK 22 334 -417 5 1266 1017 142 0 0 chr12 89357397 89357566 -31899964 + (TCTCC)n Simple_repeat Simple_repeat 2 170 0 5 1266 3749 102 81 28 chr12 89357566 89357930 -31899600 + RMER17A LTR ERVK 335 734 -17 5 1266 1612 187 37 3 chr12 89357968 89358316 -31899214 - RMER2 LTR ERV1 -130 437 78 5 1266 466 202 30 20 chr12 89358282 89358383 -31899147 + RLTR31B_Mm LTR ERVK 456 557 0 5 1266 452 352 51 14 chr12 89358578 89358794 -31898736 - RLTR4_MM-int LTR ERV1 -3354 4247 4024 5 1266 1215 174 9 5 chr12 89359103 89359323 -31898207 - Lx2 LINE L1 -2 6995 6775 5 1266 4002 143 39 34 chr12 89359321 89360022 -31897508 - Lx2 LINE L1 -352 6645 5942 5 1266 504 165 123 8 chr12 89360211 89360333 -31897197 + RLTR47_MM LTR ERV1 199 334 -198 5 1266 1038 125 12 0 chr12 89360330 89360498 -31897032 - B2_Mm1t SINE B2 -22 171 2 5 1266 230 103 359 0 chr12 89360498 89360576 -31896954 + RLTR47_MM LTR ERV1 427 532 0 5 1266 294 195 154 59 chr12 89360900 89361036 -31896494 + MTE2a LTR MaLR 39 187 -207 5 1266 337 300 18 0 chr12 89361057 89361167 -31896363 + B1_Mus1 SINE Alu 37 148 0 5 1266 531 0 0 0 chr12 89362002 89362061 -31895469 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 5 1266 351 269 51 95 chr12 89362156 89362313 -31895217 + MTE2a LTR MaLR 250 420 -1 5 1266 965 217 29 10 chr12 89362621 89362826 -31894704 + B3 SINE B2 3 211 -5 5 1266 1215 132 20 8 chr12 89363454 89363700 -31893830 - MT-int LTR MaLR -135 963 739 5 1266 348 127 0 0 chr12 89363785 89363848 -31893682 - MT-int LTR MaLR -368 730 668 5 1266 195 170 0 0 chr12 89364638 89364685 -31892845 + GA-rich Low_complexity Low_complexity 1 47 0 5 1266 7662 84 17 3 chr12 89365175 89366184 -31891346 + RLTR13D5 LTR ERVK 1 1023 0 5 1266 384 250 29 9 chr12 89366645 89366750 -31890780 - B1_Mus1 SINE Alu -5 143 37 5 1266 303 276 19 69 chr12 89366754 89366910 -31890620 - ORR1B1 LTR MaLR -192 202 3 5 1266 469 231 24 16 chr12 89367039 89367162 -31890368 + B2_Mm1t SINE B2 22 145 -48 5 1266 406 145 302 17 chr12 89367193 89367312 -31890218 + B2_Mm2 SINE B2 42 194 -1 5 1266 231 233 220 11 chr12 89367468 89367559 -31889971 + RSINE1 SINE B4 20 129 -36 5 1266 459 280 35 7 chr12 89367640 89367784 -31889746 - B3 SINE B2 -5 211 64 5 1266 2872 112 16 7 chr12 89368560 89369010 -31888520 + L1_Mm LINE L1 1857 2310 -3573 5 1266 198 0 0 0 chr12 89369013 89369035 -31888495 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1266 1438 89 10 0 chr12 89369899 89370101 -31887429 + L1_Mm LINE L1 2288 2491 -3392 5 1266 4709 74 0 2 chr12 89370101 89370699 -31886831 + L1_Mus2 LINE L1 5966 6562 -4 5 1266 358 125 0 0 chr12 89370706 89370762 -31886768 + ORR1B2 LTR MaLR 312 367 0 5 1266 1719 177 0 12 chr12 89371191 89371512 -31886018 - ORR1A3 LTR MaLR 0 326 10 5 1266 4562 153 26 5 chr12 89371500 89372342 -31885188 - ORR1A3-int LTR MaLR -49 1914 1055 5 1266 2858 141 60 29 chr12 89372342 89372452 -31885078 + RMER2 LTR ERV1 1 110 -457 5 1266 3049 82 3 0 chr12 89372452 89372843 -31884687 - MTA_Mm LTR MaLR 0 396 5 5 1266 2858 141 60 29 chr12 89372843 89373282 -31884248 + RMER2 LTR ERV1 111 567 0 5 1266 423 353 40 45 chr12 89374692 89375092 -31882438 + MuRRS4-int LTR ERV1 1309 1706 -3357 5 1266 4392 139 5 6 chr12 89375413 89376131 -31881399 + Lx2 LINE L1 5923 6645 -352 5 1266 692 161 15 0 chr12 89376120 89376250 -31881280 + Lx2 LINE L1 6765 6896 -101 5 1266 492 100 54 32 chr12 89376258 89376351 -31881179 + B2_Mm2 SINE B2 97 191 -4 5 1266 856 114 7 50 chr12 89376352 89376491 -31881039 + B1_Mm SINE Alu 2 134 -13 5 1266 2003 134 12 0 chr12 89378641 89378962 -31878568 - L1_Mus3 LINE L1 -12 6626 6302 5 1266 396 230 9 48 chr12 89379245 89379350 -31878180 + B2_Mm2 SINE B2 65 165 -30 5 1266 793 182 34 7 chr12 89379614 89379763 -31877767 - Lx7 LINE L1 -363 7333 7181 5 1266 393 192 14 0 chr12 89379763 89379836 -31877694 - B3A SINE B2 -124 74 1 5 1266 403 269 47 21 chr12 89380152 89380296 -31877234 - ORR1B1 LTR MaLR -1 378 219 5 1266 381 103 0 0 chr12 89380314 89380382 -31877148 + (GGAA)n Simple_repeat Simple_repeat 2 69 0 5 1266 352 284 18 0 chr12 89380628 89380737 -31876793 - B1_Mus1 SINE Alu 0 148 38 5 1266 416 172 129 65 chr12 89380741 89380896 -31876634 - ORR1B1 LTR MaLR -191 203 39 5 1266 536 121 0 0 chr12 89380933 89381016 -31876514 + B1_Mus2 SINE Alu 1 83 -64 5 1266 686 232 18 0 chr12 89381157 89381325 -31876205 + B2_Mm1t SINE B2 4 174 -19 5 1266 16583 55 0 16 chr12 89381329 89383966 -31873564 - L1Md_Gf LINE L1 -2634 3252 563 5 1266 281 188 0 0 chr12 89383959 89384007 -31873523 - L1Md_Gf LINE L1 -6282 337 290 5 1266 7739 62 0 0 chr12 89384007 89384969 -31872561 + L1Md_T LINE L1 5621 6582 0 5 1266 216 0 0 0 chr12 89385035 89385059 -31872471 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1266 317 142 0 5 chr12 89385072 89385137 -31872393 + B2_Mm2 SINE B2 47 109 -107 5 1266 567 42 0 0 chr12 89385177 89385188 -31872342 + (A)n Simple_repeat Simple_repeat 1 11 0 5 1266 1079 102 0 7 chr12 89385188 89385336 -31872194 + B1_Mm SINE Alu 1 147 0 5 1266 567 42 0 0 chr12 89385336 89385396 -31872134 + (A)n Simple_repeat Simple_repeat 1 60 0 5 1266 660 240 7 7 chr12 89385759 89385906 -31871624 - B3 SINE B2 -6 210 64 5 1266 21 0 0 0 chr12 89385934 89385955 -31871575 + AT_rich Low_complexity Low_complexity 1 21 0 5 1266 1656 199 3 6 chr12 89386524 89386847 -31870683 + ORR1A2 LTR MaLR 6 327 0 5 1266 3175 218 80 19 chr12 89386847 89387778 -31869752 + ORR1A2-int LTR MaLR 1 987 -976 5 1266 2595 62 0 3 chr12 89387790 89388115 -31869415 - L1Md_F3 LINE L1 -390 6194 5871 5 1266 20765 37 0 0 chr12 89388111 89390598 -31866932 - L1_Mm LINE L1 -1247 4639 2153 5 158 6956 61 0 0 chr12 89390596 89391737 -31865793 + L1_Mm LINE L1 924 2161 -3725 5 1267 1008 91 0 0 chr12 89392505 89392637 -31864893 - B1_Mm SINE Alu -14 133 2 5 1267 1281 115 28 0 chr12 89392648 89392830 -31864700 - B2_Mm2 SINE B2 -8 187 1 5 1267 267 330 29 19 chr12 89392872 89392977 -31864553 - B3A SINE B2 -6 192 87 5 1267 180 0 0 0 chr12 89393315 89393335 -31864195 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1267 1144 127 11 22 chr12 89394824 89395009 -31862521 + B2_Mm2 SINE B2 2 184 -11 5 1267 282 56 0 0 chr12 89395397 89395433 -31862097 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1267 3573 201 35 33 chr12 89395462 89396411 -31861119 - RLTR13A2 LTR ERVK 0 958 8 5 1267 6392 72 35 3 chr12 89396416 89397521 -31860009 - L1Md_F2 LINE L1 -39 6543 5386 5 1267 433 356 51 5 chr12 89397677 89397894 -31859636 - RLTR4_MM-int LTR ERV1 -3369 4232 4006 5 1267 1249 167 5 0 chr12 89398213 89398435 -31859095 - Lx2 LINE L1 0 6997 6775 5 1267 4513 137 4 3 chr12 89398433 89399150 -31858380 - Lx2 LINE L1 -352 6645 5923 5 1267 797 136 6 99 chr12 89399676 89399848 -31857682 + RLTR6_Mm LTR ERV1 1 156 -498 5 1267 532 175 234 49 chr12 89399861 89400126 -31857404 + RLTR6_Mm LTR ERV1 276 589 -65 5 1267 1043 201 62 51 chr12 89400144 89400476 -31857054 + MMVL30-int LTR ERV1 25 347 -7105 5 1267 4874 109 30 25 chr12 89400509 89401272 -31856258 + MMVL30-int LTR ERV1 708 1474 -2224 5 1267 17119 58 24 22 chr12 89401343 89403704 -31853826 + MMVL30-int LTR ERV1 960 3698 0 5 1267 797 136 6 99 chr12 89403704 89403876 -31853654 + RLTR6_Mm LTR ERV1 1 156 -498 5 1267 459 214 215 49 chr12 89403889 89404154 -31853376 + RLTR6_Mm LTR ERV1 276 584 -70 5 1267 250 338 29 29 chr12 89404227 89404364 -31853166 - MuRRS4-int LTR ERV1 -3626 1437 1301 5 1267 1191 184 22 30 chr12 89405882 89406151 -31851379 - RMER2 LTR ERV1 0 567 301 5 1267 357 362 20 32 chr12 89406825 89407170 -31850360 + MuRRS4-int LTR ERV1 1366 1706 -3357 5 1267 3148 156 30 3 chr12 89407488 89408054 -31849476 + Lx2 LINE L1 5923 6500 -497 5 1267 1705 0 0 0 chr12 89408054 89408246 -31849284 + L1Md_T LINE L1 6391 6582 0 5 1267 276 188 0 0 chr12 89408254 89408323 -31849207 + A-rich Low_complexity Low_complexity 1 69 0 5 1267 30577 93 63 12 chr12 89408325 89413727 -31843803 - L1Md_F LINE L1 -1 5882 206 5 1267 445 267 7 58 chr12 89417058 89417213 -31840317 - B1_Mur2 SINE Alu -1 148 2 5 1267 228 35 0 0 chr12 89418031 89418060 -31839470 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1267 593 232 6 0 chr12 89418243 89418411 -31839119 + (TA)n Simple_repeat Simple_repeat 2 170 0 5 1267 740 213 21 32 chr12 89418509 89418698 -31838832 - B2_Mm2 SINE B2 -8 187 1 5 1267 1226 226 144 12 chr12 89419076 89419403 -31838127 - Lx3C LINE L1 0 6976 6607 5 1267 3332 161 9 1 chr12 89419390 89420001 -31837529 + Lx3C LINE L1 5319 5931 -1045 5 1267 224 104 0 40 chr12 89420036 89420086 -31837444 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 5 1267 217 342 0 37 chr12 89420480 89420562 -31836968 + B1_Mus1 SINE Alu 9 87 -61 5 1267 360 251 3 6 chr12 89420585 89420684 -31836846 + ORR1A2 LTR MaLR 54 150 -179 5 1267 363 96 0 0 chr12 89420991 89421043 -31836487 + (TCTG)n Simple_repeat Simple_repeat 3 54 0 5 1267 1063 176 25 149 chr12 89421055 89421423 -31836107 - RLTRETN_Mm LTR ERVK 0 322 1 5 1267 195 100 0 0 chr12 89421480 89421510 -31836020 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1267 283 299 58 0 chr12 89421791 89421878 -31835652 - B1_Mm SINE Alu -49 98 7 5 1267 567 275 8 0 chr12 89422843 89422974 -31834556 - B3A SINE B2 -22 176 45 5 1267 1724 199 72 21 chr12 89423001 89423432 -31834098 - MTC-int LTR MaLR -804 454 2 5 1267 3046 142 16 119 chr12 89423465 89424202 -31833328 + RLTR22_Mur LTR ERVK 366 1026 -822 5 1267 243 310 33 0 chr12 89424404 89424518 -31833012 + B1F2 SINE Alu 9 129 -20 5 1267 574 234 45 13 chr12 89424660 89424816 -31832714 + URR1A DNA MER1_type 60 220 -6 5 1267 260 307 0 51 chr12 89424821 89424900 -31832630 + ID_B1 SINE B4 124 198 -26 5 1267 324 0 0 0 chr12 89425087 89425123 -31832407 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1267 429 176 19 47 chr12 89425123 89425230 -31832300 - B1_Mur3 SINE Alu -32 117 14 5 1267 455 228 102 39 chr12 89425370 89425498 -31832032 - B1_Mur2 SINE Alu -9 140 5 5 1267 1086 76 14 20 chr12 89425527 89425662 -31831868 + B1_Mm SINE Alu 1 137 -10 6 1267 216 0 0 0 chr12 89425662 89425686 -31831844 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1267 1086 76 14 20 chr12 89425686 89425698 -31831832 + B1_Mm SINE Alu 138 147 0 6 1267 559 277 100 25 chr12 89426152 89426352 -31831178 - B3 SINE B2 0 216 2 6 1267 260 317 110 0 chr12 89426464 89426546 -31830984 - RSINE1 SINE B4 -74 91 1 6 1267 561 242 30 0 chr12 89426548 89426680 -31830850 - ID_B1 SINE B4 -9 215 80 6 1267 203 61 0 29 chr12 89426681 89426715 -31830815 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1267 259 210 0 114 chr12 89427142 89427212 -31830318 + PB1 SINE Alu 47 108 -19 6 1267 229 250 39 0 chr12 89427333 89427385 -31830145 - B1F1 SINE Alu -8 141 88 6 1267 339 208 216 10 chr12 89427379 89427476 -31830054 - B3 SINE B2 -36 180 64 6 1267 395 308 0 64 chr12 89427579 89427704 -31829826 - B1_Mur1 SINE Alu -32 117 1 6 1267 4021 158 36 18 chr12 89427805 89428519 -31829011 + Lx2 LINE L1 6271 6997 0 6 1267 311 179 0 82 chr12 89428615 89428700 -31828830 - ID_B1 SINE B4 -34 190 113 6 1267 203 241 0 75 chr12 89428982 89429046 -31828484 + A-rich Low_complexity Low_complexity 2 61 0 6 1267 378 243 0 209 chr12 89429046 89429233 -31828297 + B1_Mus1 SINE Alu 1 148 0 6 1267 203 241 0 75 chr12 89429233 89429262 -31828268 + A-rich Low_complexity Low_complexity 62 88 0 6 1267 4293 27 0 0 chr12 89429436 89429918 -31827612 - LTRIS_Mm LTR ERV1 0 482 1 6 1267 35592 52 9 13 chr12 89429918 89434473 -31823057 - MuRRS-int LTR ERV1 0 4690 1 6 1267 4160 33 6 0 chr12 89434473 89434952 -31822578 - LTRIS_Mm LTR ERV1 0 482 1 6 1267 262 152 0 0 chr12 89436043 89436089 -31821441 - RMER4B LTR ERVK 0 585 540 6 1267 330 26 0 0 chr12 89436089 89436128 -31821402 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1267 730 72 0 0 chr12 89436128 89436225 -31821305 - B1_Mm SINE Alu -9 138 42 6 1267 273 169 0 106 chr12 89436167 89436233 -31821297 - RLTR25B LTR ERVK -529 499 441 6 1267 226 94 215 15 chr12 89436243 89436308 -31821222 - RMER4B LTR ERVK -29 556 479 6 1267 1608 222 54 3 chr12 89436322 89436714 -31820816 - RMER4B LTR ERVK -164 421 10 6 1267 2378 152 24 0 chr12 89436999 89437373 -31820157 + SRV_MM-int LTR ERVK 628 1010 -5157 6 1267 30577 82 9 20 chr12 89437383 89441172 -31816358 + SRV_MM-int LTR ERVK 1336 5086 -1081 6 1267 1090 50 43 0 chr12 89441172 89441312 -31816218 - B1_Mm SINE Alu -1 146 1 6 1267 30577 82 9 20 chr12 89441312 89441630 -31815900 + SRV_MM-int LTR ERVK 5087 5397 -770 6 1267 5253 129 8 24 chr12 89441656 89442449 -31815081 + SRV_MM-int LTR ERVK 5388 6167 0 6 1267 2858 79 0 5 chr12 89442449 89442816 -31814714 + RLTR8 LTR ERVK 1 365 0 6 1267 244 182 23 0 chr12 89442816 89442860 -31814670 - RLTR19B LTR ERVK -665 50 6 6 1267 284 226 45 36 chr12 89443145 89443255 -31814275 + Lx4B LINE L1 6944 7054 -4 6 1267 329 237 0 0 chr12 89443271 89443347 -31814183 + L1_Mur2 LINE L1 4505 4580 -1297 6 1267 1465 205 10 7 chr12 89443344 89443644 -31813886 - Lx4B LINE L1 -1169 5889 5589 6 1267 3422 249 111 13 chr12 89443655 89444666 -31812864 + Lx2B LINE L1 5867 6976 -24 6 1267 6360 167 20 61 chr12 89444670 89445205 -31812325 + L1_Mur2 LINE L1 4105 4637 -1240 6 1267 262 0 53 0 chr12 89445205 89445243 -31812287 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 6 1267 6360 167 20 61 chr12 89445243 89446064 -31811466 + L1_Mur2 LINE L1 4638 5405 -472 6 1267 3586 204 8 37 chr12 89446241 89446995 -31810535 + MMVL30-int LTR ERV1 2874 3605 -93 6 1267 4981 48 2 0 chr12 89447071 89447657 -31809873 + LTRIS_Mus LTR ERV1 1 587 0 6 1267 373 227 24 6 chr12 89448170 89448334 -31809196 - ORR1A2-int LTR MaLR -1066 726 560 6 1267 437 187 55 0 chr12 89448244 89448335 -31809195 - MT2B LTR ERVL -350 251 156 6 1267 1029 102 0 0 chr12 89448336 89448473 -31809057 + B1_Mus2 SINE Alu 1 137 -10 6 1267 180 0 0 0 chr12 89448474 89448494 -31809036 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1267 4110 40 2 0 chr12 89448494 89448975 -31808555 - LTRIS_Mm LTR ERV1 0 482 1 6 1267 32977 62 19 19 chr12 89448975 89453434 -31804096 - MuRRS-int LTR ERV1 0 4690 1 6 1267 4168 42 0 0 chr12 89453434 89453916 -31803614 - LTRIS_Mm LTR ERV1 0 482 1 6 1267 460 219 73 0 chr12 89453932 89454028 -31803502 - MT2B LTR ERVL -342 259 157 6 1267 2837 182 24 7 chr12 89453989 89454565 -31802965 - ORR1A2-int LTR MaLR -1194 598 13 6 1267 490 208 0 70 chr12 89454578 89454707 -31802823 - ORR1A2 LTR MaLR 0 326 207 6 1267 1129 156 46 59 chr12 89455281 89455463 -31802067 - ORR1A2 LTR MaLR -91 236 44 6 1267 1036 174 11 0 chr12 89455463 89455641 -31801889 - B2_Mm2 SINE B2 -13 182 3 6 1267 1129 156 46 59 chr12 89455641 89455697 -31801833 - ORR1A2 LTR MaLR -284 43 1 6 1267 602 164 35 0 chr12 89455698 89455814 -31801716 - URR1A DNA MER1_type -61 165 46 6 1267 317 260 47 31 chr12 89455701 89455828 -31801702 + CYRA11_Mm Unknown Y-chromosome 239 367 -250 6 1267 182 341 35 12 chr12 89456123 89456209 -31801321 + MIR3 SINE MIR 114 201 -7 6 1267 459 287 52 64 chr12 89456502 89456751 -31800779 - MTE2a LTR MaLR -115 264 3 6 1267 293 200 0 0 chr12 89456925 89456980 -31800550 + B1_Mur4 SINE Alu 13 67 -83 6 1267 250 275 65 21 chr12 89457135 89457228 -31800302 + MTEb LTR MaLR 278 374 -5 6 1267 1616 31 0 15 chr12 89457390 89457585 -31799945 - B2_Mm1t SINE B2 0 193 2 6 1267 1148 88 0 0 chr12 89457599 89457747 -31799783 - B1_Mus1 SINE Alu 0 148 1 6 1267 3420 152 128 15 chr12 89457832 89458494 -31799036 - RMER19A LTR ERVK 0 737 1 6 1267 237 235 0 81 chr12 89458599 89458624 -31798906 - PB1D10 SINE Alu -1 116 94 6 1267 1854 165 12 6 chr12 89458624 89458948 -31798582 - ORR1A4 LTR MaLR -3 326 1 6 1267 237 235 0 81 chr12 89458948 89458996 -31798534 - PB1D10 SINE Alu -24 93 49 6 1267 525 105 0 0 chr12 89459169 89459255 -31798275 + (GGA)n Simple_repeat Simple_repeat 1 86 0 6 1267 7547 97 10 3 chr12 89459717 89460733 -31796797 + RLTR13D5 LTR ERVK 1 1023 0 6 1267 389 262 19 0 chr12 89461193 89461296 -31796234 - B1_Mus1 SINE Alu -5 143 39 6 1267 358 261 9 48 chr12 89461290 89461458 -31796072 - ORR1B1 LTR MaLR -180 214 3 6 1267 618 189 125 6 chr12 89461609 89461769 -31795761 + B2_Mm2 SINE B2 1 179 -16 6 1267 328 104 336 19 chr12 89461801 89461908 -31795622 + B2_Mm2 SINE B2 47 187 -8 6 1267 298 309 171 0 chr12 89462071 89462194 -31795336 + RSINE1 SINE B4 20 163 -2 6 1267 429 264 27 20 chr12 89462242 89462389 -31795141 - B3 SINE B2 -5 211 64 6 1267 2929 106 20 2 chr12 89463164 89463610 -31793920 + L1_Mm LINE L1 1857 2310 -3573 6 1267 1461 86 0 0 chr12 89464498 89464695 -31792835 + L1_Mm LINE L1 2295 2491 -3392 6 1267 4637 79 0 3 chr12 89464695 89465294 -31792236 + L1_Mus2 LINE L1 5966 6562 -4 6 1267 345 143 0 0 chr12 89465301 89465357 -31792173 + ORR1B2 LTR MaLR 312 367 0 6 1267 295 157 0 0 chr12 89465735 89465786 -31791744 - ORR1A3 LTR MaLR 0 326 276 6 1267 4357 55 0 11 chr12 89465786 89466337 -31791193 + L1Md_F2 LINE L1 6038 6582 0 6 1267 1654 182 6 15 chr12 89466357 89466686 -31790844 - ORR1A3 LTR MaLR 0 326 1 6 1267 6264 95 8 15 chr12 89466704 89467986 -31789544 + L1Md_Gf LINE L1 239 1613 -4273 6 1267 36078 37 0 0 chr12 89467980 89473209 -31784321 + L1Md_T LINE L1 265 5589 -297 6 1267 9177 5 0 0 chr12 89473209 89474205 -31783325 + L1Md_T LINE L1 5590 6585 0 6 1267 30052 79 6 0 chr12 89474213 89478229 -31779301 + L1Md_F2 LINE L1 1545 5585 -298 6 1267 8116 49 3 2 chr12 89478230 89479224 -31778306 + L1Md_F2 LINE L1 5587 6581 -1 6 1267 4348 161 23 4 chr12 89479226 89480042 -31777488 - ORR1A3-int LTR MaLR -77 1886 1055 6 1267 3027 151 18 25 chr12 89480043 89480152 -31777378 + RMER2 LTR ERV1 2 110 -457 6 1267 3213 71 2 0 chr12 89480152 89480547 -31776983 - MTA_Mm LTR MaLR 0 396 1 6 1267 3027 151 18 25 chr12 89480547 89481007 -31776523 + RMER2 LTR ERV1 111 567 0 6 1267 219 36 0 0 chr12 89482509 89482537 -31774993 + (CCA)n Simple_repeat Simple_repeat 3 30 0 6 1267 250 346 29 29 chr12 89482537 89482674 -31774856 + RLTR4_MM-int LTR ERV1 1301 1437 -3626 6 1267 204 67 0 0 chr12 89482710 89482740 -31774790 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1267 302 318 25 19 chr12 89482795 89482952 -31774578 + RLTR4_MM-int LTR ERV1 1549 1706 -3357 6 1267 4270 147 12 3 chr12 89483271 89483974 -31773556 + Lx2 LINE L1 5923 6645 -352 6 1267 1219 162 5 5 chr12 89483972 89484195 -31773335 + Lx2 LINE L1 6775 6997 0 6 1267 451 348 72 26 chr12 89484514 89484780 -31772750 + RLTR4_MM-int LTR ERV1 4006 4232 -3369 6 1267 4142 58 113 3 chr12 89484888 89485598 -31771932 + L1Md_F2 LINE L1 5386 6174 -408 6 1267 3558 203 34 32 chr12 89485601 89486548 -31770982 + RLTR13A2 LTR ERVK 10 958 0 6 1267 186 133 0 0 chr12 89486579 89486609 -31770921 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1267 2068 133 9 0 chr12 89488952 89489274 -31768256 - L1_Mus3 LINE L1 -12 6626 6302 6 1267 732 216 12 24 chr12 89489527 89489693 -31767837 + B2_Mm2 SINE B2 2 165 -30 6 1267 728 203 34 7 chr12 89489957 89490106 -31767424 - Lx7 LINE L1 -363 7333 7181 6 1267 368 206 14 0 chr12 89490106 89490179 -31767351 - B3A SINE B2 -124 74 1 6 1267 1399 69 16 21 chr12 89490220 89490412 -31767118 + B2_Mm1t SINE B2 3 193 0 6 1267 331 283 52 17 chr12 89490707 89490822 -31766708 - ORR1B1 LTR MaLR -1 378 260 6 1267 501 17 0 0 chr12 89490867 89490925 -31766605 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 6 1267 339 278 28 0 chr12 89491177 89491285 -31766245 - B1_Mus1 SINE Alu 0 148 38 6 1267 430 174 136 71 chr12 89491289 89491444 -31766086 - ORR1B1 LTR MaLR -191 203 39 6 1267 558 108 0 0 chr12 89491481 89491564 -31765966 + B1_Mus2 SINE Alu 1 83 -64 6 1267 563 257 18 0 chr12 89491704 89491875 -31765655 + B2_Mm1a SINE B2 4 177 -16 6 1267 310 160 0 5 chr12 89491887 89491952 -31765578 + B2_Mm2 SINE B2 47 109 -107 6 1267 291 125 0 0 chr12 89491991 89492001 -31765529 + (A)n Simple_repeat Simple_repeat 1 10 0 6 1267 1033 122 0 0 chr12 89492001 89492148 -31765382 + B1_Mm SINE Alu 1 147 0 6 1267 291 125 0 0 chr12 89492148 89492193 -31765337 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1267 383 289 109 0 chr12 89492381 89492509 -31765021 + RSINE1 SINE B4 20 161 -4 6 1267 378 0 0 0 chr12 89492565 89492607 -31764923 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1267 467 268 16 8 chr12 89492610 89492738 -31764792 - B3 SINE B2 -24 192 64 6 1267 1701 185 9 6 chr12 89493359 89493680 -31763850 + ORR1A2 LTR MaLR 6 327 0 6 1267 3975 205 83 30 chr12 89493680 89494825 -31762705 + ORR1A2-int LTR MaLR 1 1183 -780 6 1267 407 132 26 0 chr12 89495190 89495266 -31762264 + CT-rich Low_complexity Low_complexity 3 80 0 6 1267 747 64 36 0 chr12 89495266 89495376 -31762154 - B1_Mus1 SINE Alu 0 148 35 6 1267 255 178 62 99 chr12 89495309 89495390 -31762140 - RLTR25B LTR ERVK -519 509 432 6 1267 6196 114 14 19 chr12 89495444 89495822 -31761708 - L1_Mus3 LINE L1 -90 6548 6175 6 1267 3199 126 32 4 chr12 89495822 89496315 -31761215 + LTRIS4 LTR ERV1 1 507 0 6 1267 6196 114 14 19 chr12 89496315 89496891 -31760639 - L1_Mus3 LINE L1 -464 6174 5599 6 1267 900 171 28 11 chr12 89497021 89497198 -31760332 - B2_Mm2 SINE B2 -14 181 2 6 1267 207 323 0 15 chr12 89497849 89497915 -31759615 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1267 720 35 0 0 chr12 89498020 89498107 -31759423 + (TTTC)n Simple_repeat Simple_repeat 3 89 0 7 1267 2143 147 12 87 chr12 89499405 89499830 -31757700 + ORR1B1 LTR MaLR 2 394 0 7 1267 780 165 203 0 chr12 89500014 89500196 -31757334 - MTD LTR MaLR 0 419 201 1 1267 350 324 6 6 chr12 89500244 89500424 -31757106 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1267 213 39 0 0 chr12 89500440 89500466 -31757064 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1267 433 128 70 2 chr12 89501736 89501831 -31755699 + B1_Mur1 SINE Alu 36 140 -9 4 1267 189 175 0 0 chr12 89501836 89501876 -31755654 + (CCAA)n Simple_repeat Simple_repeat 1 40 0 5 1267 1623 214 18 3 chr12 89501987 89502325 -31755205 - ORR1C1 LTR MaLR -35 343 1 6 1267 457 322 46 49 chr12 89502442 89502675 -31754855 - MTD LTR MaLR -128 242 4 1 1267 662 150 14 63 chr12 89503093 89503235 -31754295 + ORR1D1 LTR MaLR 3 137 -237 7 1267 437 0 19 0 chr12 89503236 89503289 -31754241 + (TTTC)n Simple_repeat Simple_repeat 4 57 0 8 1267 2832 52 3 0 chr12 89503289 89503633 -31753897 + ORR1A0 LTR MaLR 2 346 0 9 1267 13987 58 8 2 chr12 89503633 89505414 -31752116 + ORR1A0-int LTR MaLR 1 1792 0 9 1267 3077 20 3 0 chr12 89505414 89505759 -31751771 + ORR1A0 LTR MaLR 1 346 0 9 1267 948 65 0 0 chr12 89505759 89505883 -31751647 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 1 1267 7479 75 0 7 chr12 89505904 89506065 -31751465 - L1_Mus1 LINE L1 0 6567 6413 1 1267 1577 188 39 76 chr12 89506065 89506473 -31751057 - RLTR9C LTR ERVK 0 393 1 1 1267 7479 75 0 7 chr12 89506473 89507275 -31750255 - L1_Mus1 LINE L1 -155 6412 5611 1 1267 996 223 40 59 chr12 89507275 89507547 -31749983 + ORR1D1 LTR MaLR 107 373 -1 7 1267 291 324 29 19 chr12 89508214 89508318 -31749212 + B3A SINE B2 87 191 -7 1 1267 1300 108 27 0 chr12 89508361 89508546 -31748984 + B2_Mm2 SINE B2 1 190 -5 1 1267 945 99 8 0 chr12 89508547 89508678 -31748852 + B1_Mm SINE Alu 2 133 -14 1 1267 2025 136 9 0 chr12 89510823 89511153 -31746377 - L1_Mus3 LINE L1 -4 6634 6302 1 1267 625 230 33 39 chr12 89511404 89511585 -31745945 + B2_Mm2 SINE B2 2 181 -14 1 1267 746 182 33 13 chr12 89511833 89511983 -31745547 - Lx7 LINE L1 -363 7333 7181 1 1267 333 222 14 0 chr12 89511983 89512055 -31745475 - B3A SINE B2 -124 74 2 1 1267 371 267 68 17 chr12 89512370 89512488 -31745042 - ORR1B1 LTR MaLR -1 378 255 2 1267 401 236 19 19 chr12 89512805 89512913 -31744617 - B1_Mus1 SINE Alu -2 146 39 2 1267 392 223 19 68 chr12 89512918 89513077 -31744453 - ORR1B1 LTR MaLR -191 203 1 2 1267 1120 82 0 0 chr12 89513106 89513253 -31744277 + B1_Mus2 SINE Alu 1 147 0 2 1267 604 254 17 0 chr12 89513394 89513567 -31743963 + B2_Mm1t SINE B2 1 176 -17 2 1267 317 142 0 5 chr12 89513580 89513645 -31743885 + B2_Mm2 SINE B2 47 109 -107 2 1267 29 28 0 0 chr12 89513657 89513693 -31743837 + AT_rich Low_complexity Low_complexity 1 36 0 2 1267 1058 129 0 0 chr12 89513697 89513844 -31743686 + B1_Mm SINE Alu 1 147 0 2 1267 379 279 101 0 chr12 89514053 89514182 -31743348 + RSINE1 SINE B4 20 161 -4 2 1267 638 230 6 32 chr12 89514228 89514385 -31743145 - B3 SINE B2 0 216 64 2 1267 1675 194 6 6 chr12 89515005 89515327 -31742203 + ORR1A2 LTR MaLR 6 327 0 2 1267 2581 191 35 41 chr12 89515327 89516454 -31741076 + ORR1A2-int LTR MaLR 1 1180 -783 2 1267 1074 102 0 0 chr12 89516806 89516982 -31740548 + (TTC)n Simple_repeat Simple_repeat 3 178 0 3 1267 207 0 0 0 chr12 89516984 89517007 -31740523 + (TCC)n Simple_repeat Simple_repeat 2 24 0 3 1267 216 0 0 0 chr12 89517007 89517031 -31740499 + (TTA)n Simple_repeat Simple_repeat 2 25 0 3 1267 674 106 18 0 chr12 89517057 89517170 -31740360 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 3 1267 696 117 9 0 chr12 89517174 89517285 -31740245 - B1_Mus1 SINE Alu 0 148 37 3 1267 5259 133 69 84 chr12 89517285 89517739 -31739791 - L1_Mus3 LINE L1 -22 6616 6144 3 1267 434 35 0 0 chr12 89517739 89517797 -31739733 + LTRIS4 LTR ERV1 2 59 -448 3 1267 5259 133 69 84 chr12 89517797 89518319 -31739211 - L1_Mus3 LINE L1 -22 6143 5599 3 1267 983 169 11 11 chr12 89518451 89518631 -31738899 - B2_Mm2 SINE B2 -14 181 2 3 1267 2635 73 6 3 chr12 89520203 89520548 -31736982 - ORR1A1 LTR MaLR 0 346 1 3 1268 28 0 0 0 chr12 89522518 89522546 -31734984 + AT_rich Low_complexity Low_complexity 1 28 0 3 1268 201 108 0 0 chr12 89525683 89525720 -31731810 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 4 1268 972 132 51 22 chr12 89525929 89526107 -31731423 + B2_Mm2 SINE B2 5 187 -8 4 1268 761 211 32 0 chr12 89526362 89526518 -31731012 - Lx7 LINE L1 -361 7335 7175 4 1268 360 154 15 0 chr12 89526519 89526584 -31730946 - B3A SINE B2 -131 67 2 4 1268 383 272 49 24 chr12 89526900 89527044 -31730486 - ORR1A2 LTR MaLR -1 378 219 4 1268 295 203 162 7 chr12 89527416 89527570 -31729960 - ORR1A2-int LTR MaLR -1055 737 560 4 1268 544 145 29 0 chr12 89527503 89527572 -31729958 - MT2B LTR ERVL -314 287 154 4 1268 1021 102 0 0 chr12 89527572 89527709 -31729821 + B1_Mus2 SINE Alu 1 137 -10 4 1268 234 0 0 0 chr12 89527710 89527736 -31729794 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1268 544 222 11 164 chr12 89527736 89527875 -31729655 - MT2B LTR ERVL -344 257 133 4 1268 2888 184 13 2 chr12 89527842 89528396 -31729134 - ORR1A2-int LTR MaLR -1403 560 1 4 1268 467 225 0 70 chr12 89528396 89528525 -31729005 - ORR1A2 LTR MaLR 0 326 207 4 1268 1260 145 4 42 chr12 89529109 89529293 -31728237 - ORR1A2 LTR MaLR -99 228 45 4 1268 1043 163 11 17 chr12 89529293 89529474 -31728056 - B2_Mm2 SINE B2 -13 182 3 4 1268 1260 145 4 42 chr12 89529474 89529526 -31728004 - ORR1A2 LTR MaLR -283 44 1 4 1268 602 164 35 0 chr12 89529527 89529643 -31727887 - URR1A DNA MER1_type -61 165 46 4 1268 316 260 47 31 chr12 89529530 89529657 -31727873 + CYRA11_Mm Unknown Y-chromosome 239 367 -250 5 1268 182 353 35 12 chr12 89529952 89530038 -31727492 + MIR3 SINE MIR 114 201 -7 5 1268 439 292 84 141 chr12 89530233 89530580 -31726950 - MTE2b LTR MaLR -50 329 3 5 1268 301 196 0 0 chr12 89530763 89530819 -31726711 + B1_Mur4 SINE Alu 12 67 -83 5 1268 242 292 73 93 chr12 89530798 89531056 -31726474 + MTEb LTR MaLR 115 374 -5 5 1268 1214 41 0 39 chr12 89531238 89531391 -31726139 - B1_Mus2 SINE Alu 0 147 1 5 1268 3212 163 132 14 chr12 89531476 89532135 -31725395 - RMER19A LTR ERVK 0 737 1 5 1268 249 57 0 0 chr12 89532223 89532258 -31725272 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1268 249 337 0 29 chr12 89532258 89532270 -31725260 - PB1D10 SINE Alu -11 106 96 5 1268 1883 157 9 24 chr12 89532270 89532604 -31724926 - ORR1A4 LTR MaLR 0 329 1 5 1268 249 337 0 29 chr12 89532604 89532695 -31724835 - PB1D10 SINE Alu -22 95 6 5 1268 185 0 40 0 chr12 89532734 89532759 -31724771 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1268 403 280 102 0 chr12 89533021 89533139 -31724391 + RSINE1 SINE B4 4 133 -32 6 1268 201 39 0 0 chr12 89533155 89533181 -31724349 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1268 293 96 0 55 chr12 89533181 89533198 -31724332 + (TAAA)n Simple_repeat Simple_repeat 1 16 0 6 1268 2234 91 22 12 chr12 89533198 89533522 -31724008 - IAPLTR2b LTR ERVK 0 327 1 6 1268 293 96 0 55 chr12 89533522 89533559 -31723971 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 1268 1051 223 0 5 chr12 89533641 89533848 -31723682 + B3 SINE B2 4 209 -7 6 1268 450 137 0 0 chr12 89533969 89534042 -31723488 + B1_Mus1 SINE Alu 12 84 -64 6 1268 3364 58 0 0 chr12 89534043 89534459 -31723071 + L1Md_F2 LINE L1 6155 6570 -12 6 1268 1146 178 150 0 chr12 89534461 89534563 -31722967 - RLTR14 LTR ERV1 -52 330 213 6 1268 180 0 0 0 chr12 89534563 89534583 -31722947 + (TTAG)n Simple_repeat Simple_repeat 1 20 0 7 1268 1146 178 150 0 chr12 89534583 89534767 -31722763 - RLTR14 LTR ERV1 -170 212 3 6 1268 212 254 0 29 chr12 89534767 89534836 -31722694 - B3A SINE B2 -127 71 5 7 1268 216 0 0 0 chr12 89534918 89534942 -31722588 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1268 408 229 28 28 chr12 89534959 89535067 -31722463 + PB1 SINE Alu 13 120 -7 7 1268 727 171 0 0 chr12 89535084 89535201 -31722329 + B1_Mur3 SINE Alu 24 140 -9 7 1268 231 143 0 23 chr12 89535358 89535401 -31722129 - B1_Mur4 SINE Alu -100 50 9 7 1268 257 200 0 48 chr12 89535404 89535467 -31722063 - HY3 scRNA scRNA -41 60 1 7 1268 190 273 38 25 chr12 89535570 89535649 -31721881 + MIR SINE MIR 81 160 -102 7 1268 277 328 8 53 chr12 89535662 89535794 -31721736 + B1F1 SINE Alu 23 148 -1 7 1268 382 203 0 0 chr12 89536203 89536272 -31721258 + Lx8 LINE L1 6678 6746 -727 7 1268 1053 212 57 89 chr12 89536272 89536644 -31720886 - RMER16 LTR ERVK 0 533 174 8 1268 2094 168 3 32 chr12 89536644 89537013 -31720517 - Lx2A1 LINE L1 -320 6688 6331 8 1268 189 0 0 0 chr12 89537013 89537034 -31720496 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1268 2308 161 28 48 chr12 89537034 89537562 -31719968 - L1VL4 LINE L1 -2319 1296 791 8 1268 1102 96 0 0 chr12 89537562 89537708 -31719822 - B1_Mus2 SINE Alu -1 146 1 8 1268 2308 196 66 103 chr12 89537708 89538186 -31719344 - L1VL4 LINE L1 -5568 790 326 8 1268 427 195 0 44 chr12 89538213 89538304 -31719226 - ORR1A2 LTR MaLR -195 132 46 8 1268 1034 95 0 58 chr12 89538306 89538462 -31719068 + B1_Mm SINE Alu 1 147 0 8 1268 226 141 14 27 chr12 89538499 89538572 -31718958 + A-rich Low_complexity Low_complexity 2 73 0 8 1268 255 211 0 0 chr12 89538572 89538624 -31718906 - ORR1A2 LTR MaLR -271 58 7 8 1268 262 307 43 43 chr12 89538861 89538953 -31718577 - B4 SINE B4 -194 98 7 8 1268 223 0 0 98 chr12 89539061 89539102 -31718428 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 8 1268 1106 114 101 1 chr12 89539122 89539321 -31718209 + MT2B2 LTR ERVL 123 340 -244 9 1268 961 209 43 14 chr12 89539445 89539654 -31717876 + B3 SINE B2 2 216 0 9 1268 506 292 49 0 chr12 89539696 89539840 -31717690 - RSINE1 SINE B4 0 165 15 9 1268 3374 127 54 9 chr12 89540057 89540612 -31716918 + MT2B2 LTR ERVL 1 580 -4 9 1268 557 162 23 0 chr12 89540693 89540825 -31716705 - ORR1A2-int LTR MaLR -252 846 739 8 1268 358 127 0 0 chr12 89540907 89540970 -31716560 - ORR1A2-int LTR MaLR -368 730 668 8 1268 282 152 0 0 chr12 89541754 89541813 -31715717 + GA-rich Low_complexity Low_complexity 1 59 0 9 1268 7437 94 18 3 chr12 89542304 89543312 -31714218 + RLTR13D5 LTR ERVK 1 1023 0 9 1268 343 283 19 19 chr12 89543767 89543875 -31713655 - B1_Mus1 SINE Alu -2 146 39 9 1268 339 277 9 48 chr12 89543869 89544037 -31713493 - ORR1B1 LTR MaLR -180 214 3 9 1268 518 200 25 16 chr12 89544166 89544288 -31713242 + B2_Mm1t SINE B2 22 144 -49 9 1268 337 135 161 31 chr12 89544325 89544435 -31713095 + B2_Mm2 SINE B2 47 188 -5 9 1268 257 202 233 11 chr12 89544598 89544688 -31712842 + RSINE1 SINE B4 20 129 -36 1 1268 466 285 28 7 chr12 89544769 89544914 -31712616 - B3 SINE B2 -5 211 64 1 1268 2516 106 83 9 chr12 89545696 89546116 -31711414 + L1_Mm LINE L1 1860 2310 -3573 1 1268 1389 112 0 0 chr12 89547001 89547198 -31710332 + L1_Mm LINE L1 2295 2491 -3392 1 1268 4585 77 2 3 chr12 89547198 89547796 -31709734 + L1_Mus2 LINE L1 5966 6562 -4 1 1268 358 125 0 0 chr12 89547806 89547862 -31709668 + ORR1B2 LTR MaLR 312 367 0 1 1268 1549 191 0 31 chr12 89548245 89548514 -31709016 - ORR1A3 LTR MaLR -8 318 55 1 1268 2997 29 0 3 chr12 89548514 89548861 -31708669 + ORR1A0 LTR MaLR 1 346 0 1 1268 1549 191 0 31 chr12 89548861 89548910 -31708620 - ORR1A3 LTR MaLR -272 54 10 1 1268 4424 157 23 23 chr12 89548898 89549042 -31708488 - ORR1A3-int LTR MaLR -49 1914 1785 1 1268 1660 26 0 20 chr12 89549042 89549238 -31708292 - B2_Mm1a SINE B2 0 193 2 1 1268 4424 157 23 23 chr12 89549238 89549953 -31707577 - ORR1A3-int LTR MaLR -179 1784 1055 1 1268 2935 143 36 25 chr12 89549954 89550059 -31707471 + RMER2 LTR ERV1 2 110 -457 1 1268 3227 61 3 0 chr12 89550059 89550450 -31707080 - MTA_Mm LTR MaLR 0 396 5 1 1268 2935 143 36 25 chr12 89550450 89550904 -31706626 + RMER2 LTR ERV1 111 567 0 1 1268 2199 162 6 2 chr12 89553116 89553515 -31704015 + Lx2 LINE L1 5923 6328 -669 1 1268 455 312 77 35 chr12 89553675 89553934 -31703596 + RLTR4_MM-int LTR ERV1 4009 4299 -3307 1 1268 1651 87 1 5 chr12 89554021 89554247 -31703283 + L1Md_F2 LINE L1 5383 5607 -633 1 1268 7085 101 8 6 chr12 89554248 89555242 -31702288 + L1Md_F2 LINE L1 5587 6582 0 1 1268 1165 122 11 22 chr12 89555658 89555843 -31701687 - B2_Mm2 SINE B2 -11 184 2 1 1268 209 30 0 57 chr12 89557345 89557380 -31700150 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1268 257 330 28 19 chr12 89557722 89557830 -31699700 + B3A SINE B2 87 195 -3 1 1268 994 110 134 0 chr12 89557871 89558035 -31699495 + B2_Mm2 SINE B2 3 188 -7 1 1268 1094 53 0 0 chr12 89558045 89558177 -31699353 + B1_Mm SINE Alu 2 133 -14 1 1268 201 200 18 18 chr12 89559497 89559553 -31697977 + (CAT)n Simple_repeat Simple_repeat 3 58 0 1 1268 2033 137 9 0 chr12 89560334 89560656 -31696874 - L1_Mus3 LINE L1 -12 6626 6302 1 1268 633 236 43 25 chr12 89560907 89561068 -31696462 + B2_Mm2 SINE B2 2 165 -30 1 1268 748 223 36 12 chr12 89561300 89561326 -31696204 - Lx7 LINE L1 -344 7352 7328 1 1268 180 0 0 0 chr12 89561326 89561346 -31696184 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1268 748 223 36 12 chr12 89561346 89561487 -31696043 - Lx7 LINE L1 -369 7327 7181 1 1268 383 181 14 0 chr12 89561487 89561559 -31695971 - B3A SINE B2 -124 74 2 1 1268 198 0 0 0 chr12 89561726 89561748 -31695782 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1268 361 267 59 17 chr12 89561906 89562024 -31695506 - ORR1B1 LTR MaLR -1 378 256 1 1268 373 262 18 18 chr12 89562336 89562445 -31695085 - B1_Mus1 SINE Alu -2 146 38 1 1268 419 167 136 71 chr12 89562449 89562604 -31694926 - ORR1B1 LTR MaLR -191 203 39 1 1268 333 94 0 36 chr12 89562641 89562696 -31694834 + B1_Mus2 SINE Alu 1 53 -94 1 1268 742 222 18 0 chr12 89562700 89562871 -31694659 + B2_Mm1t SINE B2 4 177 -16 1 1268 293 160 0 5 chr12 89562883 89562948 -31694582 + B2_Mm2 SINE B2 47 109 -107 1 1268 1034 122 0 0 chr12 89562996 89563143 -31694387 + B1_Mm SINE Alu 1 147 0 1 1268 246 320 26 0 chr12 89563401 89563479 -31694051 + RSINE1 SINE B4 82 161 -4 1 1268 564 232 13 32 chr12 89563525 89563681 -31693849 - B3 SINE B2 0 216 64 1 1268 1541 215 6 6 chr12 89564298 89564616 -31692914 + ORR1A2 LTR MaLR 6 323 -4 1 1268 2423 180 16 68 chr12 89564621 89565192 -31692338 + ORR1A2-int LTR MaLR 2 542 -1421 1 1268 571 202 17 62 chr12 89565176 89565397 -31692133 + MT2B LTR ERVL 132 287 -314 1 1268 438 232 17 124 chr12 89565580 89565757 -31691773 + ORR1A2 LTR MaLR 1 158 -171 1 1268 397 224 28 18 chr12 89565742 89565851 -31691679 + B1_Mus1 SINE Alu 37 146 -2 1 1268 337 280 69 10 chr12 89566170 89566271 -31691259 + ORR1A2 LTR MaLR 255 361 -18 1 1268 320 239 14 0 chr12 89566320 89566391 -31691139 + B3A SINE B2 3 74 -124 1 1268 761 179 15 7 chr12 89566400 89566535 -31690995 + Lx7 LINE L1 7194 7329 -367 1 1268 436 153 0 126 chr12 89566789 89566812 -31690718 - B2_Mm2 SINE B2 -6 189 168 1 1268 1176 136 11 0 chr12 89566812 89566996 -31690534 + B2_Mm1t SINE B2 2 187 -6 1 1268 436 153 0 126 chr12 89566996 89567099 -31690431 - B2_Mm2 SINE B2 -28 167 79 1 1268 24 0 0 0 chr12 89567349 89567373 -31690157 + AT_rich Low_complexity Low_complexity 1 24 0 1 1268 22 56 0 0 chr12 89568250 89568286 -31689244 + AT_rich Low_complexity Low_complexity 1 36 0 1 1268 1095 92 0 0 chr12 89568389 89568531 -31688999 + B1_Mus1 SINE Alu 1 142 -6 1 1268 441 0 0 0 chr12 89568533 89568582 -31688948 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1268 198 0 0 0 chr12 89570142 89570164 -31687366 + (CAG)n Simple_repeat Simple_repeat 2 23 0 1 1268 1140 138 11 11 chr12 89571741 89571924 -31685606 + B2_Mm2 SINE B2 4 186 -9 1 1268 1026 116 0 0 chr12 89571928 89572075 -31685455 - B1_Mus2 SINE Alu 0 147 1 1 1268 1179 138 5 31 chr12 89572075 89572268 -31685262 - B2_Mm1a SINE B2 -4 189 1 1 1268 3411 70 2 28 chr12 89572268 89572726 -31684804 + L1Md_F2 LINE L1 6122 6567 -15 1 1268 713 84 8 0 chr12 89574224 89574343 -31683187 + (TC)n Simple_repeat Simple_repeat 2 121 0 1 1268 405 0 0 0 chr12 89574345 89574390 -31683140 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1268 645 175 8 38 chr12 89574407 89574538 -31682992 - B1_Mur4 SINE Alu -22 128 2 1 1268 281 289 50 58 chr12 89574430 89574551 -31682979 - B4 SINE B4 -94 198 79 1 1268 464 195 202 8 chr12 89575399 89575523 -31682007 + B1_Mus1 SINE Alu 1 148 0 1 1268 237 108 0 0 chr12 89575529 89575566 -31681964 + (GGA)n Simple_repeat Simple_repeat 2 38 0 1 1268 848 226 24 43 chr12 89575603 89575811 -31681719 + B3 SINE B2 8 211 -5 1 1268 4389 89 10 11 chr12 89576243 89576857 -31680673 - L1_Mus2 LINE L1 -1 6565 5953 1 1268 1591 124 18 11 chr12 89577263 89577549 -31679981 + RLTR5_Mm LTR ERV1 341 628 0 1 1268 1494 154 11 22 chr12 89577619 89577897 -31679633 + Lx2A1 LINE L1 6733 7007 -1 1 1268 341 228 11 11 chr12 89577942 89578035 -31679495 + ORR1A4 LTR MaLR 3 95 -234 1 1268 507 221 0 0 chr12 89578038 89578160 -31679370 + (TA)n Simple_repeat Simple_repeat 2 123 0 1 1268 229 211 49 73 chr12 89578206 89578288 -31679242 + MT2B LTR ERVL 185 264 -337 1 1268 493 222 19 0 chr12 89578215 89578323 -31679207 + B1_Mus1 SINE Alu 39 148 0 1 1268 3647 65 63 2 chr12 89578559 89579082 -31678448 + LTRIS2 LTR ERV1 10 564 0 1 1268 3807 176 50 33 chr12 89579464 89580347 -31677183 + RLTR13D6 LTR ERVK 1 862 -40 1 1268 1432 133 94 7 chr12 89580397 89580685 -31676845 + MT-int LTR MaLR 668 980 -118 1 1268 1042 76 7 0 chr12 89580741 89580886 -31676644 + B1_Mus2 SINE Alu 2 147 0 1 1268 396 0 0 0 chr12 89581140 89581184 -31676346 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1268 335 262 12 0 chr12 89581234 89581318 -31676212 - B3 SINE B2 -5 211 127 1 1268 1261 84 51 0 chr12 89581623 89581801 -31675729 + B2_Mm2 SINE B2 1 187 -8 1 1268 400 243 39 0 chr12 89582198 89582301 -31675229 - B1_Mus1 SINE Alu -5 143 37 1 1268 373 246 6 72 chr12 89582304 89582463 -31675067 - ORR1B1 LTR MaLR -191 203 1 1 1268 416 105 336 19 chr12 89582682 89582789 -31674741 + B2_Mm2 SINE B2 49 189 -6 1 1268 393 271 93 0 chr12 89582946 89583064 -31674466 + RSINE1 SINE B4 13 141 -24 1 1268 351 0 0 0 chr12 89583071 89583110 -31674420 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1268 563 259 7 7 chr12 89583160 89583300 -31674230 - B3 SINE B2 -5 211 72 1 1268 1948 155 7 3 chr12 89583365 89583675 -31673855 + RLTR10E LTR ERVK 1 311 0 1 1268 684 77 22 0 chr12 89583675 89583766 -31673764 + MMERVK10C-int LTR ERVK 1 93 -7488 1 1268 229 278 0 18 chr12 89583766 89583821 -31673709 + RLTR27 LTR ERVK 222 275 -34 1 1268 1317 146 0 10 chr12 89583821 89584029 -31673501 + MMERVK10C-int LTR ERVK 225 430 -7151 1 1268 2836 118 0 0 chr12 89584122 89584529 -31673001 + MMERVK10C-int LTR ERVK 441 847 -6734 1 1268 1390 163 122 56 chr12 89584533 89584957 -31672573 + MMERVK10C-int LTR ERVK 323 819 -4587 1 1268 352 150 48 0 chr12 89584959 89585039 -31672491 + MMERVK10C-int LTR ERVK 1721 1779 -5627 1 1268 2848 19 0 0 chr12 89585039 89585361 -31672169 - RLTRETN_Mm LTR ERVK 0 322 1 1 1268 4440 77 0 9 chr12 89585362 89585928 -31671602 + MMERVK10C-int LTR ERVK 1885 2445 -5136 1 1268 1687 75 302 4 chr12 89585926 89586185 -31671345 + MMERVK10C-int LTR ERVK 2730 3066 -4515 1 1268 30208 83 14 21 chr12 89586181 89590236 -31667294 + MMERVK10C-int LTR ERVK 3552 7581 0 1 1268 34 0 0 0 chr12 89590236 89590270 -31667260 + AT_rich Low_complexity Low_complexity 1 34 0 1 1268 21 57 0 0 chr12 89593060 89593095 -31664435 + GC_rich Low_complexity Low_complexity 1 35 0 1 1268 9883 78 38 35 chr12 89593140 89594475 -31663055 + RMER16-int LTR ERVK 1519 2851 -2555 1 1268 198 0 0 0 chr12 89594475 89594497 -31663033 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 1 1268 9883 78 38 35 chr12 89594497 89594612 -31662918 + RMER16-int LTR ERVK 2852 2973 -2433 1 1268 2891 72 2 30 chr12 89594613 89595014 -31662516 + L1_Mus2 LINE L1 6175 6564 -2 1 1268 356 99 155 0 chr12 89595015 89595086 -31662444 - RMER16-int LTR ERVK -1770 3636 3555 1 1268 2304 115 3 33 chr12 89595097 89595456 -31662074 - L1_Mm LINE L1 -653 5230 4883 1 1268 365 317 30 10 chr12 89595820 89596021 -31661509 - L1M5 LINE L1 -1369 4777 4573 1 1268 330 26 0 0 chr12 89596246 89596285 -31661245 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1 1268 187 324 56 0 chr12 89596341 89596412 -31661118 + MIRc SINE MIR 89 163 -105 1 1268 515 130 15 61 chr12 89596428 89596559 -31660971 - L1_Mus4 LINE L1 -1 6635 6511 1 1268 222 143 0 0 chr12 89596559 89596608 -31660922 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1268 805 176 31 21 chr12 89596609 89596660 -31660870 - B2_Mm2 SINE B2 0 195 147 1 1268 1513 52 0 5 chr12 89596660 89596854 -31660676 - L1_Mus1 LINE L1 0 6567 6375 1 1268 805 176 31 21 chr12 89596854 89596994 -31660536 - B2_Mm2 SINE B2 -49 146 3 1 1268 333 0 0 0 chr12 89597001 89597038 -31660492 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1268 333 288 56 50 chr12 89599741 89599902 -31657628 - MER5A DNA MER1_type -18 171 10 1 1268 308 239 69 15 chr12 89601257 89601373 -31656157 - B3 SINE B2 -53 163 1 1 1268 557 244 32 74 chr12 89601753 89601943 -31655587 + B3A SINE B2 1 182 -16 1 1268 255 266 0 41 chr12 89601943 89602041 -31655489 + (CATATA)n Simple_repeat Simple_repeat 1 94 0 1 1268 359 202 8 0 chr12 89602053 89602177 -31655353 + (CA)n Simple_repeat Simple_repeat 2 126 0 1 1268 417 115 67 40 chr12 89603468 89603566 -31653964 + B1_Mur1 SINE Alu 36 140 -9 2 1268 231 146 0 0 chr12 89603571 89603612 -31653918 + (CCAA)n Simple_repeat Simple_repeat 1 41 0 2 1268 1846 170 19 8 chr12 89603711 89604072 -31653458 - ORR1C1 LTR MaLR -13 365 1 2 1268 489 289 85 69 chr12 89604119 89604424 -31653106 - ORR1E LTR MaLR -46 313 4 2 1268 1766 182 26 52 chr12 89604687 89605069 -31652461 + ORR1D1 LTR MaLR 3 374 0 2 1268 687 223 46 36 chr12 89605145 89605340 -31652190 + B3A SINE B2 2 198 0 2 1268 1272 97 28 0 chr12 89605382 89605558 -31651972 + B2_Mm2 SINE B2 1 181 -14 2 1268 327 358 96 6 chr12 89606554 89606731 -31650799 - MIRb SINE MIR -34 234 42 2 1268 702 247 36 16 chr12 89607623 89607653 -31649877 - B3 SINE B2 -12 204 176 2 1268 207 69 0 0 chr12 89607653 89607682 -31649848 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 2 1268 702 247 36 16 chr12 89607682 89607844 -31649686 - B3 SINE B2 -41 175 8 2 1268 942 164 0 0 chr12 89607870 89608091 -31649439 + CT-rich Low_complexity Low_complexity 1 221 0 2 1268 896 173 0 0 chr12 89608092 89608242 -31649288 - B1_Mur4 SINE Alu 0 150 1 2 1268 290 281 50 58 chr12 89609090 89609103 -31648427 + B4 SINE B4 79 90 -202 2 1268 687 156 8 38 chr12 89609103 89609236 -31648294 + B1_Mur4 SINE Alu 2 130 -20 2 1268 362 134 0 15 chr12 89609268 89609336 -31648194 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 1268 471 219 246 17 chr12 89611222 89611454 -31646076 - B4A SINE B4 -6 286 2 2 1268 322 260 32 68 chr12 89611488 89611678 -31645852 - L1MC5 LINE L1 -398 7563 7381 2 1268 448 162 175 75 chr12 89612093 89612213 -31645317 + BGLII_B LTR ERVK 12 143 -298 2 1268 1411 158 96 17 chr12 89612152 89612476 -31645054 - BGLII_B LTR ERVK -27 394 55 2 1268 1310 57 11 0 chr12 89612482 89612657 -31644873 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 2 1268 459 0 0 0 chr12 89612657 89612708 -31644822 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1268 1195 68 0 0 chr12 89612708 89612855 -31644675 - B1_Mus2 SINE Alu 0 147 1 2 1268 296 260 112 28 chr12 89612876 89612983 -31644547 - RMER4A LTR ERVK -37 429 314 2 1268 2262 190 85 65 chr12 89612997 89613610 -31643920 - MYSERV16_I-int LTR ERVK -1417 909 285 2 1268 277 246 267 17 chr12 89613617 89613733 -31643797 - MYSERV16_I-int LTR ERVK -2168 158 14 2 1268 411 268 33 26 chr12 89614143 89614296 -31643234 - RMER6-int LTR ERVK -2222 955 802 2 1268 2749 107 37 2 chr12 89615895 89616298 -31641232 - BGLII_B LTR ERVK -7 434 18 2 1268 261 341 236 14 chr12 89616918 89617126 -31640404 + MLT1K LTR MaLR 342 595 0 2 1268 210 91 0 0 chr12 89617478 89617511 -31640019 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1268 677 253 168 29 chr12 89617530 89617774 -31639756 - B4A SINE B4 -12 280 3 2 1268 644 288 158 21 chr12 89618247 89618538 -31638992 - ORR1E LTR MaLR -2 357 27 2 1268 1181 138 6 0 chr12 89618713 89618887 -31638643 - B2_Mm1t SINE B2 -18 175 1 2 1268 236 212 0 70 chr12 89618944 89619003 -31638527 + (CAGAGA)n Simple_repeat Simple_repeat 3 59 0 2 1268 216 0 0 0 chr12 89619003 89619027 -31638503 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1268 236 212 0 70 chr12 89619027 89619053 -31638477 + (CAGAGA)n Simple_repeat Simple_repeat 6 28 0 2 1268 1338 107 21 0 chr12 89619236 89619423 -31638107 - B2_Mm2 SINE B2 -1 194 4 2 1268 815 251 82 5 chr12 89620682 89620716 -31636814 - B3 SINE B2 -1 215 166 2 1268 246 32 0 0 chr12 89620716 89620747 -31636783 + (TATG)n Simple_repeat Simple_repeat 1 31 0 2 1268 815 251 82 5 chr12 89620747 89620908 -31636622 - B3 SINE B2 -51 165 6 2 1268 1239 89 0 0 chr12 89620910 89621089 -31636441 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1268 1314 89 0 0 chr12 89621112 89621564 -31635966 + (TG)n Simple_repeat Simple_repeat 1 452 0 2 1268 375 255 71 10 chr12 89621564 89621663 -31635867 - RSINE1 SINE B4 -56 109 5 2 1268 201 219 50 0 chr12 89622595 89622648 -31634882 - MIR SINE MIR -114 162 98 2 1268 457 248 43 60 chr12 89622671 89622838 -31634692 - MLT1C LTR MaLR -26 441 231 2 1268 237 33 0 0 chr12 89623452 89623482 -31634048 + (CTG)n Simple_repeat Simple_repeat 3 32 0 2 1268 184 286 0 0 chr12 89623982 89624024 -31633506 - MIRb SINE MIR -8 260 219 2 1268 196 339 0 0 chr12 89623995 89624051 -31633479 - L2b LINE L2 -25 3350 3295 2 1268 633 116 209 26 chr12 89624070 89624185 -31633345 - B1_Mus1 SINE Alu -12 136 1 2 1268 204 40 0 0 chr12 89624187 89624212 -31633318 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2 1268 264 245 189 0 chr12 89624265 89624371 -31633159 + L2a LINE L2 3299 3424 -2 2 1268 297 380 161 55 chr12 89624581 89625040 -31632490 - MER45C DNA Tip100 -356 597 90 2 1268 653 269 87 6 chr12 89625040 89625223 -31632307 - MLT1D LTR MaLR 0 505 308 2 1268 510 17 0 0 chr12 89625241 89625300 -31632230 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2 1268 751 220 35 0 chr12 89625309 89625450 -31632080 - B1_Mur1 SINE Alu 0 149 4 2 1268 1723 144 91 85 chr12 89625450 89625741 -31631789 + ORR1B2 LTR MaLR 3 308 -59 2 1268 852 143 75 0 chr12 89625741 89625874 -31631656 - B1_Mus1 SINE Alu -3 145 3 2 1268 1723 144 91 85 chr12 89625874 89625945 -31631585 + ORR1B2 LTR MaLR 309 367 0 2 1268 924 129 208 0 chr12 89626470 89626648 -31630882 - URR1A DNA MER1_type -4 222 8 2 1268 936 293 65 82 chr12 89626645 89627073 -31630457 - MT2A LTR ERVL -20 513 93 2 1268 233 288 0 70 chr12 89627050 89627121 -31630409 - MTEa LTR MaLR -292 87 22 2 1268 568 279 89 37 chr12 89627894 89628084 -31629446 + B4 SINE B4 9 208 -84 2 1268 560 274 0 0 chr12 89627973 89628097 -31629433 + B1_Mur1 SINE Alu 9 132 -17 2 1268 368 105 18 0 chr12 89628102 89628159 -31629371 - ORR1D2 LTR MaLR -3 367 310 2 1268 280 309 102 9 chr12 89628255 89628363 -31629167 - B1F2 SINE Alu -31 118 1 2 1268 273 314 72 8 chr12 89628363 89628376 -31629154 - ID_B1 SINE B4 -22 198 70 2 1268 496 265 123 41 chr12 89628391 89628733 -31628797 - L1MEc LINE L1 -5484 916 547 2 1268 7587 107 26 16 chr12 89628867 89630935 -31626595 - L1_Mus4 LINE L1 0 6636 4558 2 1268 3801 101 0 7 chr12 89630935 89631502 -31626028 + L1_Mus4 LINE L1 4030 4592 -1291 2 1268 797 350 131 25 chr12 89632007 89632487 -31625043 + MER74A LTR ERVL 3 533 -25 2 1268 251 227 152 51 chr12 89632547 89632626 -31624904 - MIRb SINE MIR -87 181 95 2 1268 343 218 52 25 chr12 89633510 89633615 -31623915 - B1F1 SINE Alu -5 115 12 2 1268 333 0 0 0 chr12 89633747 89633784 -31623746 + (TATG)n Simple_repeat Simple_repeat 2 38 0 2 1268 992 139 7 0 chr12 89633788 89633932 -31623598 - B1_Mur4 SINE Alu -5 145 1 2 1268 715 192 13 25 chr12 89633933 89634152 -31623378 - L1_Mur3 LINE L1 -877 5482 5277 2 1268 306 336 57 0 chr12 89634220 89634342 -31623188 - MIRc SINE MIR -103 165 37 2 1268 1048 243 8 48 chr12 89634752 89635003 -31622527 + B4 SINE B4 1 241 -51 2 1268 660 36 0 0 chr12 89635021 89635104 -31622426 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 1268 227 244 25 25 chr12 89635120 89635200 -31622330 + (CAGAGA)n Simple_repeat Simple_repeat 4 83 0 2 1268 1339 84 26 5 chr12 89635261 89635452 -31622078 + B2_Mm2 SINE B2 1 195 0 2 1268 306 247 261 19 chr12 89635562 89635723 -31621807 - MER3 DNA MER1_type -4 205 6 2 1268 192 97 0 0 chr12 89636155 89636186 -31621344 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1268 390 108 0 0 chr12 89636189 89636254 -31621276 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1268 561 249 0 0 chr12 89636720 89636897 -31620633 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1268 348 24 0 0 chr12 89636984 89637025 -31620505 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1268 263 290 149 21 chr12 89637132 89637273 -31620257 - LTR41 LTR ERVL -31 737 579 2 1268 643 230 147 56 chr12 89637695 89637893 -31619637 + B4A SINE B4 1 216 -76 2 1268 1099 84 19 0 chr12 89637945 89638100 -31619430 - B2_Mm2 SINE B2 -3 192 35 2 1268 213 318 112 11 chr12 89638296 89638385 -31619145 - BC1_Mm scRNA scRNA -49 103 6 2 1268 1081 159 73 24 chr12 89638724 89638930 -31618600 - B3 SINE B2 0 216 1 2 1268 1001 199 119 0 chr12 89638955 89639156 -31618374 - URR1B DNA MER1_type 0 225 1 2 1268 1124 74 14 5 chr12 89640072 89640292 -31617238 + (TG)n Simple_repeat Simple_repeat 1 222 0 2 1268 224 243 171 0 chr12 89640918 89640988 -31616542 - MIRc SINE MIR -58 210 129 2 1268 662 205 31 8 chr12 89641177 89641285 -31616245 + B1_Mur2 SINE Alu 2 109 -40 2 1268 378 0 0 0 chr12 89641285 89641327 -31616203 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1268 662 205 31 8 chr12 89641327 89641346 -31616184 + B1_Mur2 SINE Alu 110 131 -18 2 1268 180 322 68 0 chr12 89641503 89641562 -31615968 + MIR SINE MIR 124 186 -76 2 1268 194 0 0 37 chr12 89641993 89642020 -31615510 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1268 759 292 128 23 chr12 89644052 89644395 -31613135 - MTEa LTR MaLR 0 379 1 2 1268 181 336 7 59 chr12 89644770 89644906 -31612624 - L2c LINE L2 -233 3154 3026 2 1268 954 155 0 0 chr12 89645143 89645291 -31612239 - B1_Mur3 SINE Alu 0 149 2 2 1268 227 270 144 11 chr12 89645529 89645619 -31611911 + PB1D7 SINE Alu 19 120 0 2 1268 672 280 98 28 chr12 89646334 89646656 -31610874 - MLT2D LTR ERVL 0 555 107 2 1268 409 253 0 0 chr12 89646648 89646743 -31610787 + PB1D10 SINE Alu 15 109 -8 2 1268 402 200 59 76 chr12 89646753 89646872 -31610658 + BC1_Mm scRNA scRNA 2 118 -34 2 1268 25 31 0 0 chr12 89647518 89647550 -31609980 + AT_rich Low_complexity Low_complexity 1 32 0 2 1268 787 224 14 0 chr12 89647945 89648092 -31609438 - B1_Mur3 SINE Alu 0 149 1 2 1268 1031 231 10 0 chr12 89648208 89648403 -31609127 - B3 SINE B2 -10 206 10 3 1268 186 314 41 41 chr12 89648660 89648733 -31608797 + L2b LINE L2 3296 3368 -7 3 1268 202 333 62 62 chr12 89648895 89649055 -31608475 + MIRb SINE MIR 40 199 -69 3 1268 560 287 86 59 chr12 89649064 89649315 -31608215 + L1MA5 LINE L1 5053 5309 -834 3 1268 763 196 72 0 chr12 89649315 89649453 -31608077 + B1_Mur1 SINE Alu 1 148 -1 3 1268 560 236 53 26 chr12 89649453 89649557 -31607973 + L1MA5 LINE L1 5310 5423 -868 3 1268 437 264 95 8 chr12 89649574 89649700 -31607830 + B1F SINE Alu 3 139 -10 3 1268 466 273 11 79 chr12 89649775 89650038 -31607492 - RMER4B LTR ERVK -9 576 335 3 1268 808 152 63 8 chr12 89650075 89650233 -31607297 - RMER4B LTR ERVK -407 178 5 3 1268 383 248 215 0 chr12 89650302 89650423 -31607107 - B1F2 SINE Alu -1 148 2 3 1268 1594 283 93 13 chr12 89650449 89651125 -31606405 + L1MA5 LINE L1 5571 6300 0 3 1268 2318 107 92 3 chr12 89651355 89651692 -31605838 - ORR1B2 LTR MaLR 0 367 1 3 1268 192 286 79 0 chr12 89651692 89651755 -31605775 - MIR3 SINE MIR -32 176 109 3 1268 311 217 167 42 chr12 89652293 89652389 -31605141 - MLT1C LTR MaLR -274 193 86 3 1268 477 243 442 8 chr12 89652651 89652900 -31604630 - MTEb LTR MaLR 0 379 23 3 1268 209 281 15 15 chr12 89652989 89653054 -31604476 + GA-rich Low_complexity Low_complexity 4 68 0 3 1269 1156 88 0 0 chr12 89653472 89653620 -31603910 + B1_Mus1 SINE Alu 1 148 0 3 1269 207 0 0 0 chr12 89653962 89653985 -31603545 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1269 7057 63 0 8 chr12 89653987 89654923 -31602607 - L1Md_F2 LINE L1 -2 6580 5652 3 1269 203 278 90 100 chr12 89655316 89655516 -31602014 - MIRb SINE MIR -10 258 61 3 1269 310 268 19 41 chr12 89656151 89656465 -31601065 + (TATATG)n Simple_repeat Simple_repeat 1 306 0 3 1269 200 263 0 50 chr12 89657829 89657889 -31599641 - L2 LINE L2 -673 2746 2690 3 1269 219 220 0 0 chr12 89657932 89657982 -31599548 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1269 1181 234 51 0 chr12 89658205 89658461 -31599069 + B4 SINE B4 1 269 -23 3 1269 338 271 0 67 chr12 89659400 89659502 -31598028 - ID4_ SINE ID -54 98 2 3 1269 438 69 0 0 chr12 89659522 89659580 -31597950 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1269 560 229 29 0 chr12 89659581 89659686 -31597844 - RSINE1 SINE B4 -41 124 17 3 1269 246 233 66 16 chr12 89659728 89659789 -31597741 - MLT1D LTR MaLR -415 90 27 3 1269 180 0 0 0 chr12 89659933 89659953 -31597577 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1269 603 296 34 93 chr12 89659956 89660161 -31597369 - B4 SINE B4 -6 286 94 3 1269 732 193 21 35 chr12 89660018 89660163 -31597367 - B1_Mur4 SINE Alu 0 150 8 3 1269 793 262 105 0 chr12 89660167 89660377 -31597153 - B4A SINE B4 -60 232 1 3 1269 276 259 150 9 chr12 89661285 89661398 -31596132 + MIRc SINE MIR 133 261 -7 3 1269 211 355 116 0 chr12 89662847 89662968 -31594562 - MIRb SINE MIR -81 187 53 3 1269 1032 245 23 9 chr12 89663130 89663344 -31594186 + ID_B1 SINE B4 6 222 -2 3 1269 393 250 16 39 chr12 89664063 89664192 -31593338 + MER117 DNA MER1_type 28 153 -44 3 1269 533 257 7 75 chr12 89664197 89664344 -31593186 - MLT1F1 LTR MaLR 0 569 433 3 1269 406 280 108 85 chr12 89664346 89664604 -31592926 - Ricksha_c DNA MuDR -1151 897 634 3 1269 331 333 68 28 chr12 89664668 89664844 -31592686 - Ricksha_c DNA MuDR -1505 543 361 3 1269 252 291 128 0 chr12 89664873 89664959 -31592571 - MLT1F1 LTR MaLR -168 401 305 3 1269 254 179 18 0 chr12 89665063 89665119 -31592411 + GA-rich Low_complexity Low_complexity 4 60 0 3 1269 243 88 0 0 chr12 89665127 89665161 -31592369 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 1269 281 224 90 0 chr12 89665180 89665247 -31592283 - MLT1F1 LTR MaLR -458 111 39 3 1269 304 151 27 27 chr12 89666913 89666988 -31590542 + (TATG)n Simple_repeat Simple_repeat 4 78 0 3 1269 291 259 187 29 chr12 89667801 89667972 -31589558 - MLT1K LTR MaLR 0 595 398 3 1269 1547 88 32 9 chr12 89668097 89668316 -31589214 + L1Md_F2 LINE L1 6347 6570 -12 3 1269 189 121 0 0 chr12 89669275 89669308 -31588222 + (TCCTG)n Simple_repeat Simple_repeat 3 35 0 3 1269 189 238 76 45 chr12 89670441 89670507 -31587023 - L2c LINE L2 -66 3321 3254 3 1269 247 297 92 48 chr12 89671636 89671887 -31585643 - L2 LINE L2 -1739 1680 1419 3 1269 24 53 0 0 chr12 89672142 89672180 -31585350 + AT_rich Low_complexity Low_complexity 1 38 0 3 1269 385 365 121 38 chr12 89673025 89673338 -31584192 - MLT1L LTR MaLR -115 495 157 3 1269 677 200 57 0 chr12 89674889 89675029 -31582501 + B1_Mur2 SINE Alu 2 149 0 3 1269 225 0 0 0 chr12 89675080 89675105 -31582425 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 3 1269 338 267 5 18 chr12 89675240 89675347 -31582183 - B1F SINE Alu -1 116 12 3 1269 238 282 0 71 chr12 89675283 89675367 -31582163 - B4A SINE B4 -134 158 81 3 1269 375 23 0 0 chr12 89676084 89676128 -31581402 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1269 225 0 0 0 chr12 89676128 89676152 -31581378 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 1269 548 269 233 29 chr12 89676352 89676597 -31580933 + MER44A DNA MER2_type 37 331 -8 3 1269 240 59 0 0 chr12 89677092 89677126 -31580404 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 1269 196 235 100 29 chr12 89677568 89677638 -31579892 - L3 LINE CR1 -3688 801 727 3 1269 306 0 0 0 chr12 89677887 89677921 -31579609 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 3 1269 21 0 0 0 chr12 89678253 89678274 -31579256 + AT_rich Low_complexity Low_complexity 1 21 0 3 1269 248 275 0 55 chr12 89678516 89678589 -31578941 + ID4_ SINE ID 5 73 -10 3 1269 1080 248 82 71 chr12 89678976 89679428 -31578102 - RLTR12B LTR ERVK -25 503 47 3 1269 405 366 64 24 chr12 89681479 89681728 -31575802 - MIR SINE MIR -1 261 3 3 1269 188 303 30 15 chr12 89681988 89682055 -31575475 - MIRc SINE MIR -140 128 61 3 1269 834 131 7 7 chr12 89683370 89683508 -31574022 - B1_Mur3 SINE Alu -1 148 11 3 1269 468 91 0 0 chr12 89683528 89683594 -31573936 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 3 1269 763 265 25 0 chr12 89683608 89683770 -31573760 + B3A SINE B2 3 168 -30 3 1269 440 336 68 27 chr12 89683870 89684090 -31573440 - MLT1L LTR MaLR -180 430 202 3 1269 625 323 49 78 chr12 89684377 89684723 -31572807 - ORR1E LTR MaLR -23 336 1 3 1269 204 291 96 48 chr12 89686414 89686497 -31571033 + MIR3 SINE MIR 109 195 -13 3 1269 196 121 30 0 chr12 89687360 89687393 -31570137 - L2a LINE L2 -18 3408 3375 3 1269 243 163 79 89 chr12 89687428 89687529 -31570001 + MIR SINE MIR 8 107 -155 3 1269 483 272 69 94 chr12 89688557 89688881 -31568649 - MTEa LTR MaLR -12 367 43 3 1269 330 87 0 0 chr12 89690110 89690156 -31567374 + (TCCCC)n Simple_repeat Simple_repeat 2 47 0 3 1269 226 259 203 22 chr12 89690157 89690295 -31567235 + LTR37B LTR ERV1 92 254 -214 3 1269 1137 176 13 35 chr12 89690310 89690540 -31566990 - URR1B DNA MER1_type 0 225 1 3 1269 1142 276 46 34 chr12 89691303 89691652 -31565878 + Charlie19a DNA Charlie 29 381 -5 3 1269 375 318 24 0 chr12 89692228 89692313 -31565217 - PB1D10 SINE Alu -29 88 2 3 1269 357 86 0 0 chr12 89692647 89692705 -31564825 + (A)n Simple_repeat Simple_repeat 1 58 0 3 1269 321 93 0 0 chr12 89692722 89692776 -31564754 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1269 207 0 0 0 chr12 89692894 89692917 -31564613 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1269 184 243 120 13 chr12 89693652 89693727 -31563803 - MER5B DNA MER1_type -6 172 90 3 1269 2268 88 28 12 chr12 89694190 89694512 -31563018 - ORR1A2 LTR MaLR 0 327 1 3 1269 389 287 79 22 chr12 89696115 89696254 -31561276 - MLT1K LTR MaLR -125 470 324 3 1269 275 278 157 62 chr12 89696354 89696621 -31560909 - L2a LINE L2 -1 3425 3110 3 1269 270 0 0 0 chr12 89698941 89698971 -31558559 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1269 486 0 0 0 chr12 89698971 89699024 -31558506 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1269 2694 62 3 8 chr12 89700401 89700758 -31556772 + L1_Mus2 LINE L1 6212 6566 0 3 1269 221 311 14 0 chr12 89702327 89702401 -31555129 + CT-rich Low_complexity Low_complexity 2 76 0 3 1269 317 347 27 0 chr12 89702820 89702967 -31554563 - MER5A1 DNA MER1_type -15 151 1 3 1269 471 297 41 41 chr12 89702976 89703148 -31554382 + MER5A DNA MER1_type 2 173 -16 3 1269 589 281 158 47 chr12 89703279 89703723 -31553807 - L1MD3 LINE L1 -13 7982 7490 3 1269 796 257 20 50 chr12 89703959 89704160 -31553370 + B3 SINE B2 20 214 -2 3 1269 4522 39 6 2 chr12 89704301 89704838 -31552692 + L1Md_F2 LINE L1 6044 6582 0 3 1269 1270 34 0 0 chr12 89704849 89704996 -31552534 + B1_Mm SINE Alu 1 147 0 3 1269 216 200 0 0 chr12 89704996 89705041 -31552489 + A-rich Low_complexity Low_complexity 1 45 0 3 1269 229 306 71 0 chr12 89705066 89705151 -31552379 + MLT1L LTR MaLR 309 399 -211 3 1269 585 314 139 38 chr12 89705177 89705521 -31552009 + MLT1B LTR MaLR 1 379 -11 3 1269 472 281 88 18 chr12 89706128 89706298 -31551232 - MLT1D LTR MaLR -260 245 64 3 1269 234 0 0 0 chr12 89708994 89709020 -31548510 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1269 231 351 46 13 chr12 89710070 89710223 -31547307 - MER117 DNA MER1_type -5 192 35 3 1269 1618 126 33 69 chr12 89710419 89710752 -31546778 + RLTRETN_Mm LTR ERVK 1 321 -1 3 1269 1230 201 201 45 chr12 89710803 89711136 -31546394 + MTD LTR MaLR 5 389 -30 3 1269 218 29 59 0 chr12 89711138 89711172 -31546358 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1269 318 325 249 21 chr12 89711395 89711784 -31545746 + MER20B DNA MER1_type 1 478 -305 4 1269 332 303 30 0 chr12 89711825 89711924 -31545606 + MER20B DNA MER1_type 681 782 -1 4 1269 360 111 0 0 chr12 89712127 89712181 -31545349 + (TATG)n Simple_repeat Simple_repeat 2 55 0 4 1269 405 209 54 21 chr12 89712185 89712278 -31545252 + MLT1A LTR MaLR 266 361 -13 4 1269 948 208 0 0 chr12 89712315 89712488 -31545042 - Charlie13b DNA Charlie -162 350 178 4 1269 208 204 23 0 chr12 89712488 89712532 -31544998 - L2c LINE L2 -2 3385 3341 4 1269 397 293 24 24 chr12 89712838 89712964 -31544566 + PB1 SINE Alu 2 127 0 4 1269 356 376 50 39 chr12 89713269 89713449 -31544081 - MLT1A LTR MaLR -8 366 185 4 1269 212 304 0 0 chr12 89713526 89713572 -31543958 - B4A SINE B4 -163 129 84 4 1269 288 275 173 58 chr12 89713568 89713707 -31543823 - MLT1A LTR MaLR -206 159 5 4 1269 358 336 185 46 chr12 89715355 89715723 -31541807 - L1MC4 LINE L1 -5694 521 103 4 1269 304 214 116 74 chr12 89715873 89715994 -31541536 + L1MEg LINE L1 654 779 -5436 4 1269 1061 269 178 24 chr12 89716178 89716712 -31540818 + L1MC4a LINE L1 6112 6727 -1155 4 1269 1208 299 33 9 chr12 89716829 89717166 -31540364 + MLT1A LTR MaLR 18 362 -12 4 1269 286 254 270 58 chr12 89717228 89717446 -31540084 + L1ME3 LINE L1 5821 6084 -78 4 1269 929 278 101 40 chr12 89717463 89717969 -31539561 + L1MC4a LINE L1 7139 7675 -207 4 1269 241 194 59 15 chr12 89718042 89718110 -31539420 + L1M3e LINE L1 1984 2054 -4976 4 1269 1919 132 9 69 chr12 89718563 89718913 -31538617 - ORR1A4 LTR MaLR 0 329 1 4 1269 283 268 166 37 chr12 89718929 89719224 -31538306 + L1M3e LINE L1 3165 3497 -3606 4 1269 267 236 33 11 chr12 89719254 89719344 -31538186 + L1M3e LINE L1 4265 4356 -2747 4 1269 798 326 47 66 chr12 89719344 89719830 -31537700 + L1M3e LINE L1 4472 4948 -2155 4 1269 1311 287 76 73 chr12 89720333 89721224 -31536306 + L1M3e LINE L1 5092 5985 -1118 4 1269 3049 242 32 23 chr12 89721362 89722174 -31535356 - Lx9 LINE L1 -171 7473 6655 4 1269 308 292 49 16 chr12 89722281 89722403 -31535127 + L1MEg LINE L1 2040 2165 -4145 4 1269 752 109 34 7 chr12 89722305 89722452 -31535078 + GA-rich Low_complexity Low_complexity 2 152 0 4 1269 672 156 155 8 chr12 89722510 89722639 -31534891 - B1_Mur4 SINE Alu -1 149 2 4 1269 486 0 0 0 chr12 89722964 89723018 -31534512 + (TTA)n Simple_repeat Simple_repeat 1 54 0 4 1269 457 287 8 0 chr12 89723619 89723741 -31533789 - MTEa LTR MaLR -46 333 211 4 1269 600 206 44 7 chr12 89723754 89723891 -31533639 + MT2A LTR ERVL 1 142 -391 4 1269 416 336 169 4 chr12 89724627 89724899 -31532631 - Arthur1 DNA Tip100 -3498 449 133 4 1269 613 164 19 0 chr12 89725086 89725190 -31532340 + B1_Mur4 SINE Alu 1 106 -44 4 1269 576 289 7 0 chr12 89725208 89725343 -31532187 - B3A SINE B2 -62 136 1 4 1269 986 223 19 0 chr12 89725424 89725635 -31531895 - B3 SINE B2 0 216 2 4 1269 231 172 52 0 chr12 89726368 89726426 -31531104 - MIRc SINE MIR -14 254 194 4 1269 7019 168 40 14 chr12 89727722 89729014 -31528516 - Lx2B LINE L1 -4 6996 5671 4 1269 1946 148 83 0 chr12 89729020 89729239 -31528291 - RMER19B LTR ERVK -6 896 670 4 1269 369 0 0 0 chr12 89729239 89729280 -31528250 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1269 1946 148 83 0 chr12 89729280 89729397 -31528133 - RMER19B LTR ERVK -233 669 533 4 1269 618 288 47 0 chr12 89730145 89730315 -31527215 - ID_B1 SINE B4 -6 218 41 4 1269 336 24 0 0 chr12 89730487 89730528 -31527002 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1269 339 291 55 0 chr12 89730535 89730662 -31526868 - L2 LINE L2 -588 2831 2698 4 1269 238 259 135 31 chr12 89731015 89731178 -31526352 - L2 LINE L2 -1244 2175 1996 4 1269 21 36 0 0 chr12 89731347 89731375 -31526155 + AT_rich Low_complexity Low_complexity 1 28 0 4 1269 231 175 0 0 chr12 89731595 89731635 -31525895 - tRNA-Leu-TTG tRNA tRNA -46 40 1 4 1269 3350 16 39 0 chr12 89731759 89732140 -31525390 + MTA_Mm LTR MaLR 1 396 0 4 1269 9114 32 19 1 chr12 89732140 89733217 -31524313 + MTA_Mm-int LTR MaLR 1 1096 -2 4 1269 3350 16 39 0 chr12 89733219 89733600 -31523930 + MTA_Mm LTR MaLR 1 396 0 4 1269 467 16 48 0 chr12 89733735 89733797 -31523733 + (TTTTC)n Simple_repeat Simple_repeat 5 69 0 4 1269 4131 120 7 8 chr12 89733797 89733819 -31523711 - L1_Mm LINE L1 -712 5171 5150 4 1269 1704 39 55 30 chr12 89733819 89734055 -31523475 - L1Md_F3 LINE L1 -1 6583 6342 4 1269 4131 120 7 8 chr12 89734055 89734647 -31522883 - L1_Mm LINE L1 -734 5149 4559 4 1269 2164 96 10 0 chr12 89734646 89734947 -31522583 + L1_Mm LINE L1 4247 4550 -1333 4 1269 187 29 27 54 chr12 89735420 89735457 -31522073 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 4 1269 804 258 57 14 chr12 89735459 89735671 -31521859 - B4 SINE B4 -69 223 3 4 1269 702 178 65 22 chr12 89735997 89736135 -31521395 - RMER1C Other Other -1 1341 1198 4 1269 336 102 0 0 chr12 89736135 89736184 -31521346 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 4 1269 1726 295 108 23 chr12 89736193 89736749 -31520781 - RMER1C Other Other -365 977 375 4 1269 2012 140 11 55 chr12 89736781 89737144 -31520386 + ORR1C1 LTR MaLR 3 349 -29 4 1269 247 246 0 14 chr12 89737205 89737275 -31520255 - MER46C DNA MER2_type -6 332 264 4 1269 326 0 74 0 chr12 89737419 89737473 -31520057 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1269 365 305 160 6 chr12 89737562 89737914 -31519616 - MLT2B3 LTR ERVL -109 406 1 4 1269 345 233 251 77 chr12 89738015 89738210 -31519320 + MLT1E3 LTR MaLR 396 624 0 4 1269 238 286 31 52 chr12 89738234 89738330 -31519200 + L1MC4 LINE L1 7360 7453 -589 4 1269 998 272 47 7 chr12 89738493 89738771 -31518759 + B4A SINE B4 2 290 -2 4 1269 369 292 68 38 chr12 89738897 89739276 -31518254 + L1MC5 LINE L1 7384 7893 -149 4 1269 604 308 55 7 chr12 89739727 89740158 -31517372 + Arthur1 DNA Tip100 133 613 -3334 4 1269 5859 72 6 0 chr12 89740158 89741050 -31516480 - L1_Mus3 LINE L1 -317 6321 5426 4 1269 2175 68 10 3 chr12 89741050 89741344 -31516186 + L1_Mus3 LINE L1 6325 6620 -18 4 1269 534 70 0 0 chr12 89741344 89741415 -31516115 + (CTA)n Simple_repeat Simple_repeat 1 71 0 4 1269 287 293 30 0 chr12 89741418 89741517 -31516013 + Arthur1 DNA Tip100 582 683 -3264 4 1269 1814 194 0 9 chr12 89741637 89741981 -31515549 - Lx LINE L1 -6 6648 6308 4 1269 242 308 54 21 chr12 89742044 89742137 -31515393 + ID_B1 SINE B4 96 191 -33 4 1269 375 87 75 19 chr12 89742716 89742822 -31514708 + (CAGAGA)n Simple_repeat Simple_repeat 3 114 0 4 1269 587 202 28 0 chr12 89742971 89743080 -31514450 - PB1D10 SINE Alu -5 112 1 4 1269 387 311 89 12 chr12 89743132 89743301 -31514229 + MLT1J LTR MaLR 327 508 -4 4 1269 692 220 130 6 chr12 89743302 89743471 -31514059 + L1MC LINE L1 5600 5789 -2093 4 1269 4123 80 0 7 chr12 89743766 89744342 -31513188 - L1Md_F2 LINE L1 0 6582 6041 4 1269 2842 47 0 0 chr12 89744342 89744685 -31512845 + L1Md_F2 LINE L1 5722 6064 -518 4 1269 569 246 7 78 chr12 89744685 89744726 -31512804 - ID_B1 SINE B4 0 224 192 4 1269 2777 102 86 12 chr12 89744726 89745154 -31512376 - RMER6B LTR ERVK -1 460 1 4 1269 569 246 7 78 chr12 89745154 89745266 -31512264 - ID_B1 SINE B4 -33 191 82 4 1269 374 234 0 13 chr12 89745269 89745347 -31512183 - ID4 SINE ID -6 77 1 4 1269 1214 56 0 0 chr12 89745456 89745600 -31511930 + B1_Mus1 SINE Alu 3 146 -2 4 1269 1293 96 17 6 chr12 89745654 89745832 -31511698 - B2_Mm2 SINE B2 -14 181 2 4 1269 207 205 0 0 chr12 89746610 89746649 -31510881 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 4 1269 302 230 65 35 chr12 89747487 89747612 -31509918 + MIR SINE MIR 49 169 -93 4 1269 368 288 19 70 chr12 89747613 89747636 -31509894 + ID_B1 SINE B4 70 218 -6 4 1269 466 246 52 30 chr12 89747636 89747770 -31509760 + B1F2 SINE Alu 7 143 -6 4 1269 311 350 15 0 chr12 89748311 89748448 -31509082 - MLT1A0 LTR MaLR -1 373 235 4 1269 459 330 5 37 chr12 89748853 89749042 -31508488 - MLT1A0 LTR MaLR -165 200 18 4 1269 459 35 0 0 chr12 89749328 89749385 -31508145 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1269 2134 102 3 70 chr12 89750144 89750503 -31507027 + IAPLTR1a_Mm LTR ERVK 1 335 -2 4 1269 335 148 0 0 chr12 89750504 89750558 -31506972 + IAPEz-int LTR ERVK 3 56 -1931 4 1269 3506 55 5 29 chr12 89750540 89751279 -31506251 + IAPEz-int LTR ERVK 17 662 -5819 4 1269 953 50 0 8 chr12 89751279 89751399 -31506131 + IAPEz-int LTR ERVK 1359 1477 -5004 4 1269 1826 110 0 0 chr12 89751400 89751646 -31505884 + IAPEz-int LTR ERVK 2252 2497 -5183 4 1269 923 96 24 0 chr12 89751641 89751766 -31505764 + IAPEz-int LTR ERVK 4783 4910 -2770 4 1269 26828 15 4 0 chr12 89751766 89754712 -31502818 + IAPEz-int LTR ERVK 3525 6481 0 4 1269 2133 96 11 70 chr12 89754712 89755070 -31502460 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1269 261 119 0 0 chr12 89755156 89755198 -31502332 + (TGG)n Simple_repeat Simple_repeat 2 43 0 4 1269 492 18 0 0 chr12 89756440 89756497 -31501033 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 4 1269 2962 120 12 0 chr12 89756682 89757098 -31500432 - L1_Mur2 LINE L1 -34 5843 5423 4 1269 4048 156 98 24 chr12 89757371 89758289 -31499241 - RMER17B LTR ERVK 0 958 3 4 1269 434 194 3 11 chr12 89758602 89758706 -31498824 - Lx7 LINE L1 0 7696 7610 4 1269 648 70 0 0 chr12 89758707 89758793 -31498737 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 4 1269 3663 173 74 30 chr12 89758798 89759556 -31497974 - Lx7 LINE L1 -151 7545 6755 4 1269 824 260 54 22 chr12 89759565 89759789 -31497741 - Lx8 LINE L1 -137 7336 7106 4 1269 452 213 10 41 chr12 89759896 89759994 -31497536 + MTE2b LTR MaLR 205 299 -80 4 1269 308 264 95 8 chr12 89760027 89760153 -31497377 - MIR SINE MIR -17 245 109 4 1269 3771 158 54 101 chr12 89760168 89760348 -31497182 - RMER19B LTR ERVK -77 825 624 4 1269 2003 121 206 25 chr12 89760348 89760712 -31496818 - RLTR23 LTR ERV1 0 430 1 4 1269 3771 158 54 101 chr12 89760712 89761396 -31496134 - RMER19B LTR ERVK -279 623 2 4 1269 1664 105 39 0 chr12 89761405 89761662 -31495868 + RLTR10C LTR ERVK 1 267 -169 4 1269 460 103 0 0 chr12 89761662 89761730 -31495800 + RLTR10C LTR ERVK 200 267 -169 4 1269 1970 106 13 7 chr12 89761725 89762030 -31495500 + RLTR10C LTR ERVK 127 433 -3 4 1269 214 256 57 107 chr12 89762389 89762529 -31495001 + MIR SINE MIR 120 252 -10 4 1269 1106 272 28 81 chr12 89762677 89763009 -31494521 - MER31A LTR ERV1 -4 481 148 4 1269 2224 63 50 3 chr12 89763009 89763311 -31494219 + L1_Mus1 LINE L1 6248 6563 -4 4 1269 1106 272 28 81 chr12 89763311 89763327 -31494203 - MER31A LTR ERV1 -338 147 140 4 1269 261 0 0 0 chr12 89763327 89763356 -31494174 + (GAA)n Simple_repeat Simple_repeat 2 30 0 4 1269 1106 272 28 81 chr12 89763356 89763514 -31494016 - MER31A LTR ERV1 -346 139 1 4 1269 441 0 0 0 chr12 89764409 89764458 -31493072 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1269 933 169 80 21 chr12 89764765 89764952 -31492578 - MTC LTR MaLR 0 421 224 4 1269 3708 33 0 0 chr12 89764960 89765409 -31492121 - L1Md_F3 LINE L1 0 6584 6139 4 1269 657 174 14 35 chr12 89765409 89765552 -31491978 + RLTR46 LTR ERVK 1 140 -180 4 1269 304 271 35 69 chr12 89765596 89765798 -31491732 + RLTR46 LTR ERVK 126 320 0 4 1269 3271 38 10 0 chr12 89765798 89766198 -31491332 - L1Md_F3 LINE L1 -440 6144 5741 4 1269 4978 53 0 0 chr12 89766197 89766797 -31490733 + L1Md_F3 LINE L1 5089 5688 -195 4 1269 872 161 155 6 chr12 89766797 89766978 -31490552 - MTC LTR MaLR -213 208 1 4 1269 239 71 24 0 chr12 89767011 89767053 -31490477 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1269 530 259 71 14 chr12 89767061 89767202 -31490328 - B1F SINE Alu 0 149 1 4 1269 359 326 66 53 chr12 89767211 89767363 -31490167 + MLT1K LTR MaLR 331 484 -111 4 1269 1277 61 0 6 chr12 89767944 89768125 -31489405 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1269 1231 83 0 6 chr12 89768136 89768796 -31488734 + (CA)n Simple_repeat Simple_repeat 1 655 0 5 1269 401 339 0 18 chr12 89770164 89770275 -31487255 + MER58A DNA MER1_type 2 110 -114 5 1269 286 264 77 0 chr12 89770837 89770928 -31486602 + MER58A DNA MER1_type 112 209 -15 5 1269 2513 171 45 23 chr12 89771493 89772009 -31485521 - RLTR11A2 LTR ERVK 0 527 1 5 1269 700 307 137 27 chr12 89772105 89772544 -31484986 + MLT1D LTR MaLR 3 489 -16 5 1269 261 0 0 0 chr12 89772650 89772679 -31484851 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 5 1269 2394 151 5 8 chr12 89773503 89773898 -31483632 + ORR1B1 LTR MaLR 1 394 0 5 1269 396 345 80 25 chr12 89774729 89775003 -31482527 - B4A SINE B4 -1 291 3 5 1269 405 0 0 0 chr12 89775009 89775054 -31482476 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1269 683 252 41 118 chr12 89775056 89775371 -31482159 - B4 SINE B4 -1 291 1 5 1269 1438 138 4 22 chr12 89775807 89776036 -31481494 + URR1B DNA MER1_type 1 225 0 5 1269 618 82 0 0 chr12 89776124 89776209 -31481321 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1269 326 298 75 0 chr12 89776212 89776306 -31481224 - PB1D7 SINE Alu -7 113 13 5 1269 4889 149 42 46 chr12 89776636 89778398 -31479132 - Lx LINE L1 0 6997 5264 5 1269 3580 153 3 2 chr12 89778396 89778977 -31478553 + Lx LINE L1 4674 5255 -628 5 1269 280 101 58 0 chr12 89779227 89779296 -31478234 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 5 1269 1152 79 0 0 chr12 89779297 89779475 -31478055 + (TC)n Simple_repeat Simple_repeat 1 178 0 5 1269 312 91 0 0 chr12 89779475 89779518 -31478012 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1269 1648 127 32 0 chr12 89780417 89780669 -31476861 - RMER19B LTR ERVK -12 890 631 5 1269 715 255 9 105 chr12 89780654 89780873 -31476657 - RMER19B LTR ERVK -539 198 1 5 1269 692 283 62 42 chr12 89780884 89781124 -31476406 - Tigger5 DNA MER2_type -2140 266 22 5 1269 1215 57 0 28 chr12 89781313 89781493 -31476037 + (TTCCC)n Simple_repeat Simple_repeat 4 178 0 5 1269 334 274 148 0 chr12 89781524 89781659 -31475871 - HAL1-3A_ME LINE L1 -419 2439 2285 5 1269 343 283 120 28 chr12 89781654 89781796 -31475734 - HAL1-3A_ME LINE L1 -419 2439 2285 5 1269 216 182 0 0 chr12 89781798 89781842 -31475688 + C-rich Low_complexity Low_complexity 6 49 0 5 1269 1103 44 31 6 chr12 89781844 89782005 -31475525 + (TTTCC)n Simple_repeat Simple_repeat 3 167 0 5 1269 571 244 8 25 chr12 89782005 89782127 -31475403 - PB1D9 SINE Alu 0 120 1 5 1269 411 314 65 112 chr12 89782228 89782504 -31475026 - ORR1E LTR MaLR -2 357 95 5 1269 1521 287 122 42 chr12 89782690 89783995 -31473535 - L1MD2 LINE L1 -164 6413 4995 5 1269 2065 76 7 21 chr12 89783999 89784282 -31473248 - L1Md_F2 LINE L1 -8 6574 6296 5 158 8070 67 4 2 chr12 89784282 89785314 -31472216 + L1_Mm LINE L1 4365 5398 -485 5 1270 215 227 15 0 chr12 89785616 89785682 -31471848 + CT-rich Low_complexity Low_complexity 4 70 0 5 1270 2096 289 88 28 chr12 89785698 89786898 -31470632 - L1MD2 LINE L1 -2475 4069 2799 5 1270 7453 114 11 4 chr12 89787004 89788510 -31469020 - L1_Mus4 LINE L1 -1 6635 5120 5 1270 1063 321 109 91 chr12 89788522 89788589 -31468941 - L1MD2 LINE L1 -4003 2637 2584 5 1270 380 318 9 0 chr12 89788589 89788699 -31468831 - PB1D10 SINE Alu -6 111 1 5 1270 1063 321 109 91 chr12 89788699 89789385 -31468145 - L1MD2 LINE L1 -4057 2583 1850 5 1270 288 210 15 61 chr12 89789385 89789451 -31468079 + ID4_ SINE ID 16 78 -5 5 1270 1063 321 109 91 chr12 89789451 89790288 -31467242 - L1MD2 LINE L1 -4057 1849 951 5 1270 342 0 0 0 chr12 89790331 89790369 -31467161 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1270 225 118 0 0 chr12 89790387 89790421 -31467109 - ID4_ SINE ID -46 37 4 5 1270 348 317 86 21 chr12 89790434 89790621 -31466909 - L1MD2 LINE L1 -5604 943 745 5 1270 221 75 0 24 chr12 89790633 89790674 -31466856 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1270 1188 119 17 0 chr12 89790681 89790857 -31466673 - L1_Mus3 LINE L1 -6 6632 6454 5 1270 1159 34 7 33 chr12 89790858 89791011 -31466519 + L1_Mus2 LINE L1 6234 6382 -184 5 1270 496 281 11 60 chr12 89791286 89791468 -31466062 - L1MD2 LINE L1 -6144 403 231 5 1270 550 281 152 0 chr12 89792279 89792489 -31465041 + MER44A DNA MER2_type 98 339 0 5 1270 425 224 93 12 chr12 89792559 89792645 -31464885 - B3 SINE B2 -122 94 2 5 1270 281 226 0 12 chr12 89793504 89793589 -31463941 + CT-rich Low_complexity Low_complexity 1 84 0 5 1270 723 248 0 0 chr12 89793589 89793738 -31463792 - B1_Mur3 SINE Alu 0 149 1 5 1270 1172 285 23 31 chr12 89793771 89794282 -31463248 - Lx8 LINE L1 -1474 5999 5465 5 1270 1244 289 99 31 chr12 89794279 89795001 -31462529 - L1M2 LINE L1 -2356 3787 3014 5 1270 1936 124 0 4 chr12 89795001 89795277 -31462253 - Lx LINE L1 -6 6648 6374 5 1270 1244 289 99 31 chr12 89795277 89795315 -31462215 - L1M2 LINE L1 -3130 3013 2976 5 1270 1007 264 46 4 chr12 89795327 89795589 -31461941 + ORR1D2 LTR MaLR 2 274 -96 5 1270 824 322 52 37 chr12 89795644 89796185 -31461345 - L1M2 LINE L1 -3174 2969 2421 5 1270 854 179 14 7 chr12 89796995 89797141 -31460389 - B1_Mur4 SINE Alu -1 149 3 5 1270 321 303 35 35 chr12 89797167 89797280 -31460250 + B4A SINE B4 1 113 -179 5 1270 1431 123 5 5 chr12 89797384 89797597 -31459933 + URR1A DNA MER1_type 14 226 0 5 1270 210 189 27 0 chr12 89797654 89797691 -31459839 + RSINE1 SINE B4 94 131 -34 5 1270 459 35 0 0 chr12 89797746 89797803 -31459727 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1270 409 231 9 9 chr12 89797812 89797921 -31459609 - L1MB7 LINE L1 -255 5929 5821 5 1270 953 258 0 23 chr12 89797963 89798181 -31459349 - B3 SINE B2 -2 214 2 5 1270 281 336 37 9 chr12 89799070 89799178 -31458352 + MIRb SINE MIR 73 183 -85 5 1270 209 344 0 0 chr12 89800517 89800578 -31456952 + CT-rich Low_complexity Low_complexity 4 64 0 5 1270 205 268 18 18 chr12 89800597 89800654 -31456876 - L2b LINE L2 -19 3368 3312 5 1270 248 280 107 25 chr12 89800796 89800917 -31456613 - L2b LINE L2 -213 3162 3032 5 1270 408 308 97 81 chr12 89800937 89801245 -31456285 + ORR1E LTR MaLR 47 359 0 5 1270 570 100 0 0 chr12 89801354 89801454 -31456076 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 5 1270 668 49 0 0 chr12 89801457 89801539 -31455991 - B1_Mm SINE Alu -5 142 61 5 1270 29 28 0 0 chr12 89801622 89801658 -31455872 + AT_rich Low_complexity Low_complexity 1 36 0 5 1270 1280 48 7 0 chr12 89801846 89801993 -31455537 + B1_Mus1 SINE Alu 1 148 0 5 1270 246 156 0 0 chr12 89801996 89802041 -31455489 + A-rich Low_complexity Low_complexity 2 46 0 5 1270 331 298 50 55 chr12 89802071 89802270 -31455260 - L1MC5 LINE L1 -280 7681 7484 5 1270 1174 142 147 0 chr12 89802486 89802683 -31454847 + URR1A DNA MER1_type 1 226 0 5 1270 362 304 0 11 chr12 89803419 89803512 -31454018 + MLT1H2 LTR MaLR 63 154 -335 5 1270 259 384 101 41 chr12 89803777 89804214 -31453316 + L2a LINE L2 2338 2800 -619 5 1270 2016 260 123 32 chr12 89804279 89805203 -31452327 + L1MB3 LINE L1 5168 6181 -2 5 1270 1068 231 14 0 chr12 89805221 89805429 -31452101 + B3 SINE B2 1 211 -5 5 1270 1343 114 9 14 chr12 89805622 89805836 -31451694 - ORR1C2 LTR MaLR 0 384 172 5 1270 235 211 39 0 chr12 89805836 89805888 -31451642 + GA-rich Low_complexity Low_complexity 4 57 0 5 1270 315 135 19 0 chr12 89805911 89805963 -31451567 - ORR1C2 LTR MaLR -331 53 1 5 1270 226 381 111 13 chr12 89806335 89806561 -31450969 + L2a LINE L2 2921 3168 -258 5 1270 235 265 21 135 chr12 89807105 89807201 -31450329 + ORR1D-int LTR MaLR 1 85 -1285 5 1270 423 0 0 0 chr12 89807401 89807448 -31450082 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1270 420 303 0 0 chr12 89807615 89807704 -31449826 - PB1D7 SINE Alu -31 89 1 5 1270 191 286 188 36 chr12 89807952 89808090 -31449440 - MIRc SINE MIR -76 192 34 5 1270 420 321 9 103 chr12 89808322 89808555 -31448975 - Tigger8 DNA MER2_type -126 540 330 5 1270 1533 168 92 0 chr12 89808791 89809083 -31448447 - IAPEY3_LTR LTR ERVK -12 320 2 5 1270 319 290 69 24 chr12 89809241 89809415 -31448115 - MIRm SINE MIR -71 197 18 5 1270 490 274 0 0 chr12 89809666 89809779 -31447751 + PB1D9 SINE Alu 3 115 -5 5 1270 281 293 117 33 chr12 89809862 89809982 -31447548 - LTR84a LTR ERVL -310 447 318 5 1270 738 173 173 0 chr12 89809983 89810122 -31447408 + B3A SINE B2 2 164 -34 5 1270 222 37 0 0 chr12 89810132 89810159 -31447371 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1270 1878 219 120 23 chr12 89810206 89810823 -31446707 - L1_Rod LINE L1 -746 5101 4425 5 1270 3230 59 7 9 chr12 89810810 89811237 -31446293 + MusHAL1 LINE L1 2259 2684 -28 5 1270 325 279 129 29 chr12 89811238 89811578 -31445952 - HAL1b LINE L1 -1110 899 526 5 1270 201 22 0 159 chr12 89812713 89812820 -31444710 + (CAAGC)n Simple_repeat Simple_repeat 5 94 0 5 1270 288 0 0 0 chr12 89813533 89813565 -31443965 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1270 828 271 4 28 chr12 89813566 89813820 -31443710 - MER2 DNA MER2_type -1 344 97 5 1270 300 342 30 37 chr12 89813935 89814099 -31443431 - MER2B DNA MER2_type -172 164 2 5 1270 858 332 25 31 chr12 89814144 89814464 -31443066 - MLT2C1 LTR ERVL -59 338 21 5 1270 249 33 0 0 chr12 89814658 89814688 -31442842 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1270 232 295 0 62 chr12 89815655 89815720 -31441810 + RSINE1 SINE B4 3 63 -102 5 1270 315 0 0 0 chr12 89815721 89815756 -31441774 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1270 314 227 148 0 chr12 89815853 89815941 -31441589 + PB1D7 SINE Alu 9 109 -11 5 1270 296 269 167 81 chr12 89816143 89816317 -31441213 + L2c LINE L2 3192 3380 -7 5 1270 609 228 35 62 chr12 89817094 89817239 -31440291 - B1_Mur2 SINE Alu -8 141 1 5 1270 204 67 0 0 chr12 89817806 89817836 -31439694 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1270 213 39 0 0 chr12 89818405 89818431 -31439099 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1270 688 179 0 24 chr12 89819350 89819476 -31438054 + MT2A LTR ERVL 1 123 -410 5 1270 1198 271 35 7 chr12 89819523 89819805 -31437725 - B4A SINE B4 -1 291 2 5 1270 1066 254 99 83 chr12 89819878 89820251 -31437279 + MTEa LTR MaLR 1 379 0 5 1270 318 266 114 0 chr12 89820516 89820595 -31436935 + L2c LINE L2 3260 3347 -40 5 1270 1070 114 0 39 chr12 89820779 89820934 -31436596 - B1_Mur3 SINE Alu 0 149 1 5 1270 2660 17 10 13 chr12 89821053 89821353 -31436177 + L1Md_F3 LINE L1 6271 6569 -15 6 1270 630 196 164 31 chr12 89821388 89821583 -31435947 - Lx8 LINE L1 -5 7468 7248 6 1270 241 361 26 53 chr12 89821708 89821822 -31435708 - MLT1K LTR MaLR -435 160 50 6 1270 243 328 28 0 chr12 89821932 89822035 -31435495 - MIR SINE MIR -138 130 25 6 1270 317 349 69 11 chr12 89822241 89822415 -31435115 - L1MEc LINE L1 -5787 613 430 6 1270 230 326 30 10 chr12 89822550 89822649 -31434881 - L1MEc LINE L1 -6154 246 146 6 1270 733 266 104 21 chr12 89823378 89823635 -31433895 + MLT1B LTR MaLR 5 346 -159 6 1270 334 20 39 20 chr12 89823635 89823686 -31433844 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 6 1270 309 244 38 59 chr12 89823686 89823817 -31433713 + MLT1B LTR MaLR 347 473 -32 6 1270 447 35 0 0 chr12 89824023 89824080 -31433450 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1270 1695 246 50 12 chr12 89824153 89824573 -31432957 + Lx8 LINE L1 6339 6774 -699 6 1270 348 321 54 0 chr12 89824613 89824668 -31432862 - B1F2 SINE Alu -5 144 90 6 1270 2223 131 25 3 chr12 89824668 89824990 -31432540 + ORR1A4 LTR MaLR 1 329 0 6 1270 348 321 54 0 chr12 89824990 89825046 -31432484 - B1F2 SINE Alu -60 89 28 6 1270 713 306 89 19 chr12 89825136 89825349 -31432181 - B4A SINE B4 -16 276 49 6 1270 23 0 0 0 chr12 89825367 89825390 -31432140 + AT_rich Low_complexity Low_complexity 1 23 0 6 1270 1611 283 63 88 chr12 89825403 89826455 -31431075 - L1M5 LINE L1 -745 5401 4377 6 1270 289 347 76 29 chr12 89826455 89826627 -31430903 + MLT1F LTR MaLR 1 180 -368 6 1270 647 247 62 43 chr12 89826854 89827015 -31430515 - RSINE1 SINE B4 -1 164 1 6 1270 547 119 0 35 chr12 89827226 89827313 -31430217 - 4.5SRNA scRNA scRNA 0 94 11 6 1270 3205 104 34 21 chr12 89827321 89827790 -31429740 + Lx2 LINE L1 6523 6997 0 6 1270 234 0 0 0 chr12 89828045 89828071 -31429459 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 6 1270 1467 67 6 6 chr12 89828239 89828418 -31429112 - B2_Mm2 SINE B2 -14 181 3 6 1270 392 283 96 0 chr12 89828756 89828922 -31428608 - L1M5 LINE L1 -2192 3954 3773 6 1270 468 0 0 0 chr12 89828927 89828979 -31428551 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1270 249 274 0 14 chr12 89830167 89830241 -31427289 + MLT1G LTR MaLR 56 128 -237 6 1270 895 257 195 32 chr12 89830740 89831053 -31426477 + ORR1D2 LTR MaLR 1 364 -6 6 1270 384 22 0 0 chr12 89831073 89831118 -31426412 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1270 333 0 0 0 chr12 89831118 89831154 -31426376 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1270 506 224 31 0 chr12 89831585 89831683 -31425847 - Lx8 LINE L1 -1088 6385 6285 6 1270 1584 278 46 50 chr12 89832783 89833441 -31424089 + L1MA9 LINE L1 5428 6082 -230 6 1270 428 329 84 40 chr12 89833759 89833984 -31423546 + MLT1G LTR MaLR 345 579 -12 6 1270 892 304 33 28 chr12 89834677 89835066 -31422464 - L1MA5 LINE L1 -371 5929 5539 6 1270 216 0 0 0 chr12 89835077 89835101 -31422429 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 1270 696 24 0 0 chr12 89835117 89835199 -31422331 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1270 369 275 11 32 chr12 89835199 89835293 -31422237 - B3 SINE B2 -87 129 38 6 1270 2362 266 58 32 chr12 89835524 89836450 -31421080 - Charlie2b DNA MER1_type -58 2724 1775 6 1270 399 357 88 20 chr12 89836460 89836709 -31420821 - Charlie2b DNA MER1_type -2431 351 86 6 1270 933 246 131 45 chr12 89836756 89836817 -31420713 - B4 SINE B4 0 292 229 6 1270 573 15 0 0 chr12 89836817 89836883 -31420647 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1270 933 246 131 45 chr12 89836883 89837089 -31420441 - B4 SINE B4 -64 228 4 6 1270 276 291 57 19 chr12 89837254 89837359 -31420171 - MIRb SINE MIR -25 243 135 6 1270 712 262 120 113 chr12 89837608 89837630 -31419900 + B4 SINE B4 3 20 -272 6 1270 1755 174 42 62 chr12 89837630 89838016 -31419514 + ORR1C1 LTR MaLR 1 378 0 6 1270 712 262 120 113 chr12 89838016 89838268 -31419262 + B4 SINE B4 21 279 -13 6 1270 8068 53 14 0 chr12 89838559 89840065 -31417465 - L1Md_F3 LINE L1 0 6584 5055 6 1270 193 274 32 0 chr12 89840291 89840353 -31417177 - MER5A DNA MER1_type -80 109 46 6 1270 529 316 9 0 chr12 89840902 89841016 -31416514 - ID_B1 SINE B4 -109 115 1 6 1270 450 268 52 97 chr12 89841483 89841703 -31415827 - MTE2a LTR MaLR -62 357 145 6 1270 2552 170 39 5 chr12 89841778 89842185 -31415345 + MTC LTR MaLR 1 421 0 6 1270 825 11 0 0 chr12 89842473 89842567 -31414963 + (GAA)n Simple_repeat Simple_repeat 2 95 0 6 1270 238 355 78 43 chr12 89842617 89842732 -31414798 - MTE2a LTR MaLR -235 124 6 6 1270 600 271 35 45 chr12 89842766 89842967 -31414563 + MER20 DNA MER1_type 20 218 -1 6 1270 234 281 134 45 chr12 89843535 89843669 -31413861 + MER103 DNA DNA 19 164 -2 6 1270 299 279 38 0 chr12 89844158 89844237 -31413293 - MER20 DNA MER1_type -136 83 2 6 1270 207 0 0 0 chr12 89845206 89845229 -31412301 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1270 222 185 14 58 chr12 89845257 89845326 -31412204 + (CAAA)n Simple_repeat Simple_repeat 3 68 0 6 1270 252 172 0 0 chr12 89845326 89845384 -31412146 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1270 477 0 0 0 chr12 89845384 89845437 -31412093 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1270 1287 205 26 11 chr12 89845441 89845712 -31411818 - Lx7 LINE L1 -383 7313 7039 6 1270 345 47 0 0 chr12 89845713 89845756 -31411774 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1270 361 248 170 95 chr12 89845936 89846083 -31411447 + MLT1A LTR MaLR 170 327 -47 6 1270 283 163 29 79 chr12 89846083 89846223 -31411307 + T-rich Low_complexity Low_complexity 3 135 0 6 1270 321 259 117 27 chr12 89846348 89846459 -31411071 - RMER15 LTR ERVL -154 421 301 6 1270 398 220 42 107 chr12 89846479 89846647 -31410883 - RMER15 LTR ERVL -418 157 1 6 1270 925 293 62 53 chr12 89846720 89847152 -31410378 - L1MC3 LINE L1 -194 7591 7156 6 1270 425 289 73 59 chr12 89847239 89847511 -31410019 + RLTR12B LTR ERVK 233 508 -20 6 1270 246 128 0 0 chr12 89847546 89847585 -31409945 + (TATG)n Simple_repeat Simple_repeat 4 42 0 6 1270 617 236 262 34 chr12 89847616 89847822 -31409708 - B4 SINE B4 0 292 40 6 1270 301 253 161 119 chr12 89847822 89848176 -31409354 + ORR1D1 LTR MaLR 6 374 0 6 1270 2304 149 10 60 chr12 89848562 89848948 -31408582 - ORR1B2 LTR MaLR 0 367 1 6 1270 414 244 20 140 chr12 89848961 89849185 -31408345 + MT2B LTR ERVL 65 263 -321 6 1270 706 184 28 28 chr12 89849078 89849223 -31408307 + B1_Mur4 SINE Alu 6 150 0 6 1270 232 250 34 56 chr12 89849277 89849366 -31408164 - MER46C DNA MER2_type -151 187 101 6 1270 499 304 63 85 chr12 89849423 89849822 -31407708 - MLT1B LTR MaLR 0 390 1 6 1270 400 290 11 11 chr12 89849852 89849946 -31407584 - PB1D10 SINE Alu -22 95 2 6 1270 23 0 0 0 chr12 89850406 89850429 -31407101 + AT_rich Low_complexity Low_complexity 1 23 0 6 1270 27175 129 33 15 chr12 89850454 89852099 -31405431 - Lx LINE L1 0 6654 4992 6 1270 2308 144 19 45 chr12 89852099 89852477 -31405053 + RLTR9A LTR ERVK 1 368 0 6 1270 27175 150 13 7 chr12 89852477 89854710 -31402820 - Lx LINE L1 -892 4991 2746 6 1270 3283 39 70 3 chr12 89854710 89855095 -31402435 - IAPLTR2a LTR ERVK 0 411 1 6 1270 27175 137 11 7 chr12 89855095 89856702 -31400828 - Lx LINE L1 -3138 2745 1117 6 1270 1279 128 0 39 chr12 89856706 89856910 -31400620 - L1VL2 LINE L1 -5827 508 313 6 1270 562 223 151 50 chr12 89856910 89857189 -31400341 - Lx7 LINE L1 -25 7671 7365 6 1270 315 0 0 0 chr12 89857797 89857832 -31399698 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 6 1270 393 22 0 0 chr12 89857834 89857880 -31399650 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 6 1270 225 247 18 0 chr12 89859191 89859357 -31398173 + (CA)n Simple_repeat Simple_repeat 2 170 0 6 1270 203 162 0 0 chr12 89859358 89859395 -31398135 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 6 1270 559 196 14 0 chr12 89859417 89859565 -31397965 + GA-rich Low_complexity Low_complexity 1 150 0 6 1270 341 293 58 116 chr12 89859565 89859824 -31397706 - MER102a DNA MER1_type -86 244 1 6 1270 937 254 19 0 chr12 89860355 89860560 -31396970 - ORR1D1 LTR MaLR 0 374 166 6 1270 424 171 0 28 chr12 89860560 89860668 -31396862 + GA-rich Low_complexity Low_complexity 1 105 0 6 1270 868 192 5 57 chr12 89860672 89860865 -31396665 - ORR1D1 LTR MaLR -191 183 1 6 1270 339 269 65 0 chr12 89861115 89861208 -31396322 - MIRb SINE MIR -73 195 97 6 1270 258 348 28 70 chr12 89861535 89861677 -31395853 + MLT1A1 LTR MaLR 265 400 -8 6 1270 265 238 0 19 chr12 89862284 89862387 -31395143 + CT-rich Low_complexity Low_complexity 2 102 0 6 1270 1248 274 32 35 chr12 89862411 89862675 -31394855 + MTE2b LTR MaLR 5 263 -116 6 1270 1167 284 97 0 chr12 89862675 89863017 -31394513 + MTE2a LTR MaLR 5 379 0 6 1270 1248 274 32 35 chr12 89863017 89863093 -31394437 + MTE2b LTR MaLR 264 343 -36 6 1270 281 309 119 92 chr12 89863269 89863592 -31393938 + MLT1L LTR MaLR 192 510 -100 6 1270 690 164 56 59 chr12 89863616 89863810 -31393720 - ORR1D1 LTR MaLR -8 413 175 6 1270 561 125 0 0 chr12 89863811 89863899 -31393631 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 1270 782 210 52 64 chr12 89863899 89864072 -31393458 - ORR1D1 LTR MaLR -193 181 11 6 1270 749 258 137 0 chr12 89864199 89864389 -31393141 - B3 SINE B2 0 216 1 6 1270 556 268 73 62 chr12 89864394 89864573 -31392957 - B3A SINE B2 -4 194 14 6 1270 284 250 9 0 chr12 89864623 89864735 -31392795 + (TA)n Simple_repeat Simple_repeat 1 113 0 6 1270 504 0 0 0 chr12 89864756 89864812 -31392718 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 6 1270 470 338 46 33 chr12 89865265 89865418 -31392112 - ID_B1 SINE B4 0 224 70 6 1270 1199 231 75 51 chr12 89865419 89865889 -31391641 - L1M4 LINE L1 -1386 4760 4280 6 1270 3802 162 50 5 chr12 89866445 89867109 -31390421 - Lx9 LINE L1 -245 7399 6706 6 1270 1807 198 87 77 chr12 89867202 89867617 -31389913 + MTD LTR MaLR 1 419 0 6 1270 246 308 212 0 chr12 89867762 89867908 -31389622 + MER63B DNA AcHobo 10 186 -250 6 1270 409 299 146 6 chr12 89867939 89868117 -31389413 + MER63B DNA AcHobo 224 426 -10 6 1270 378 269 97 67 chr12 89868214 89868502 -31389028 - MLT1A1 LTR MaLR 0 408 75 6 1270 1640 209 34 14 chr12 89869530 89869914 -31387616 + MTD LTR MaLR 1 421 0 6 1270 807 229 62 12 chr12 89869929 89870132 -31387398 + B3A SINE B2 2 216 0 6 1270 236 286 45 91 chr12 89870272 89870426 -31387104 - MER5B DNA MER1_type -31 147 1 7 1270 507 33 0 0 chr12 89871066 89871127 -31386403 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1270 22 35 0 0 chr12 89871664 89871693 -31385837 + AT_rich Low_complexity Low_complexity 1 29 0 7 1270 520 268 92 27 chr12 89872316 89872500 -31385030 - MER58A DNA MER1_type -2 222 27 7 1270 1425 256 15 58 chr12 89873989 89874383 -31383147 + MTEb LTR MaLR 1 377 -2 7 1270 350 336 54 0 chr12 89874816 89874965 -31382565 - MER5A1 DNA MER1_type -6 160 4 7 1270 466 291 192 32 chr12 89875032 89875344 -31382186 + MLT1A1 LTR MaLR 45 406 -2 7 1270 309 234 42 21 chr12 89875673 89875769 -31381761 + MLT1A1 LTR MaLR 465 562 0 7 1270 331 326 116 16 chr12 89876642 89876832 -31380698 - MLT1D LTR MaLR -13 492 284 7 1270 247 375 31 0 chr12 89876891 89877007 -31380523 - MLT1D LTR MaLR -288 179 60 7 1270 267 229 76 106 chr12 89877007 89877139 -31380391 + MLT1A1 LTR MaLR 1 128 -280 7 1270 1217 298 36 20 chr12 89877182 89877538 -31379992 + MTE2b LTR MaLR 1 362 -17 7 1270 200 313 35 35 chr12 89878129 89878215 -31379315 - MIRb SINE MIR -36 232 147 7 1270 231 61 0 0 chr12 89878290 89878323 -31379207 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1270 4313 7 0 0 chr12 89878325 89878776 -31378754 - L1Md_A LINE L1 0 6582 6132 7 1270 375 344 45 8 chr12 89879083 89879198 -31378332 - Tigger5 DNA MER2_type -2164 242 123 7 1270 429 333 75 17 chr12 89879198 89879372 -31378158 + B4A SINE B4 4 187 -105 7 1270 349 351 60 0 chr12 89879514 89879648 -31377882 - Tigger5 DNA MER2_type -2259 147 6 7 1270 369 0 0 0 chr12 89879699 89879740 -31377790 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1270 229 304 12 81 chr12 89879841 89879927 -31377603 + RMER17B LTR ERVK 821 900 -58 7 1270 432 0 0 0 chr12 89880554 89880602 -31376928 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1270 4403 184 96 2 chr12 89880603 89880702 -31376828 - RMER1A Other Other -15 1015 910 7 1270 231 36 0 0 chr12 89880702 89880730 -31376800 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1270 390 42 0 0 chr12 89880731 89880779 -31376751 + (CCA)n Simple_repeat Simple_repeat 1 48 0 7 1270 4403 184 96 2 chr12 89880779 89881534 -31375996 - RMER1A Other Other -121 909 81 7 1270 198 291 0 35 chr12 89881572 89881629 -31375901 + MIR SINE MIR 30 84 -178 7 1270 609 214 14 41 chr12 89881639 89881785 -31375745 + RLTR16 LTR ERVK 364 505 0 7 1270 544 320 22 0 chr12 89883113 89883294 -31374236 + MLT1B LTR MaLR 95 279 -111 7 1270 1272 250 90 30 chr12 89883326 89883660 -31373870 - MTEa LTR MaLR 0 379 26 7 1270 356 314 85 7 chr12 89883656 89883797 -31373733 + MLT1B LTR MaLR 239 390 0 7 1270 225 261 40 68 chr12 89884435 89884498 -31373032 + PB1D10 SINE Alu 42 107 -10 7 1270 248 0 0 30 chr12 89884498 89884531 -31372999 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 7 1270 2754 250 52 10 chr12 89884549 89885268 -31372262 - L1_Mur3 LINE L1 -147 5733 4985 7 1270 6187 90 9 1 chr12 89885269 89886067 -31371463 - L1_Mus3 LINE L1 0 6638 5835 7 1270 724 271 17 21 chr12 89886067 89886304 -31371226 - Lx7 LINE L1 -390 7306 7071 7 1270 10391 122 16 7 chr12 89886307 89887919 -31369611 + L1_Mm LINE L1 3631 5256 -627 7 1270 1112 306 87 40 chr12 89888281 89888985 -31368545 - L1MEc LINE L1 -3050 3269 2533 7 1270 271 282 99 0 chr12 89888997 89889068 -31368462 + ID4_ SINE ID 2 79 -4 7 1270 317 283 157 58 chr12 89889114 89889305 -31368225 - L1MEc LINE L1 -6169 231 22 7 1270 723 257 86 0 chr12 89889328 89889550 -31367980 - L1MA6 LINE L1 -1 6299 6059 7 1270 242 333 58 0 chr12 89889605 89889692 -31367838 + MLT1A0 LTR MaLR 1 92 -282 7 1270 315 311 33 13 chr12 89889767 89889903 -31367627 + MLT1A0 LTR MaLR 195 334 -31 7 1270 207 0 0 0 chr12 89889903 89889926 -31367604 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1270 315 311 33 13 chr12 89889926 89889939 -31367591 + MLT1A0 LTR MaLR 335 346 -19 7 1270 523 354 75 11 chr12 89890113 89890379 -31367151 + LTR16C LTR ERVL 207 489 0 7 1270 1088 292 81 43 chr12 89890828 89891306 -31366224 - MER44B DNA MER2_type -24 526 1 7 1270 1185 285 38 70 chr12 89891568 89892123 -31365407 - L1MC LINE L1 -2089 5793 5257 7 1270 702 298 132 8 chr12 89893579 89893836 -31363694 - B4A SINE B4 -3 289 1 7 1270 362 267 28 65 chr12 89895126 89895216 -31362314 + MER5A1 DNA MER1_type 4 95 -71 7 1270 1827 206 24 14 chr12 89895216 89895585 -31361945 + ORR1D1 LTR MaLR 1 373 -1 7 1270 362 267 28 65 chr12 89895585 89895602 -31361928 + MER5A1 DNA MER1_type 96 107 -59 7 1270 19258 67 3 0 chr12 89895739 89898189 -31359341 + L1Md_F2 LINE L1 3130 5586 -297 7 1270 8842 42 0 0 chr12 89898189 89899173 -31358357 + L1Md_F2 LINE L1 5587 6570 -12 7 1270 605 311 164 49 chr12 89900485 89901038 -31356492 + L2a LINE L2 2668 3268 -107 7 1270 467 292 0 38 chr12 89901840 89902025 -31355505 + (TATG)n Simple_repeat Simple_repeat 3 180 0 7 1270 435 19 0 0 chr12 89902039 89902091 -31355439 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1270 266 335 105 76 chr12 89903013 89903223 -31354307 + MIR SINE MIR 13 228 -34 7 1270 462 293 39 104 chr12 89903632 89903891 -31353639 + MIR SINE MIR 1 242 -20 7 1270 317 304 9 29 chr12 89904445 89904550 -31352980 + Ricksha_c DNA MuDR 2 104 -1944 7 1270 4686 206 59 31 chr12 89904553 89905610 -31351920 + Lx5 LINE L1 5765 6850 -200 7 1270 690 220 17 9 chr12 89905614 89905749 -31351781 + RSINE1 SINE B4 3 141 -24 7 1270 795 57 0 0 chr12 89905756 89905861 -31351669 + (CA)n Simple_repeat Simple_repeat 2 106 0 7 1270 216 0 0 0 chr12 89905878 89905902 -31351628 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1270 1100 103 0 0 chr12 89905902 89906038 -31351492 - B1_Mm SINE Alu -11 136 1 7 1270 329 296 107 0 chr12 89906044 89906203 -31351327 - Ricksha DNA MuDR -108 3138 2963 7 1270 35556 83 3 7 chr12 89906221 89912381 -31345149 - L1Md_F2 LINE L1 -12 6570 218 7 1270 1569 244 63 24 chr12 89912409 89912900 -31344630 - Ricksha DNA MuDR -280 2966 2457 7 1270 759 250 157 74 chr12 89912909 89913246 -31344284 - MTEa LTR MaLR -13 366 2 7 1270 3212 261 57 37 chr12 89913249 89914309 -31343221 - Ricksha DNA MuDR -831 2415 1335 7 1270 332 43 22 0 chr12 89914327 89914373 -31343157 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 7 1270 414 161 115 0 chr12 89914384 89914471 -31343059 - PB1D9 SINE Alu 0 120 24 7 1270 1356 166 9 18 chr12 89914551 89914778 -31342752 + URR1B DNA MER1_type 1 225 0 7 1270 185 0 40 0 chr12 89914902 89914927 -31342603 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 158 5073 60 11 3 chr12 89914999 89915613 -31341917 - L1Md_F2 LINE L1 -1 6581 5963 7 1271 6869 6 0 0 chr12 89915621 89916334 -31341196 - L1Md_T LINE L1 0 6582 5870 7 1271 757 72 0 0 chr12 89916334 89916431 -31341099 - B2_Mm2 SINE B2 -97 98 2 7 1271 283 260 13 0 chr12 89916468 89916545 -31340985 - Ricksha DNA MuDR -3146 100 23 7 1271 261 139 0 0 chr12 89916739 89916782 -31340748 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1271 932 149 6 0 chr12 89916796 89916970 -31340560 + (TG)n Simple_repeat Simple_repeat 2 176 0 7 1271 799 320 32 18 chr12 89916985 89917265 -31340265 - B4A SINE B4 -6 286 3 7 1271 1403 130 77 5 chr12 89917266 89917475 -31340055 - URR1B DNA MER1_type -1 224 1 7 1271 480 18 0 0 chr12 89918133 89918190 -31339340 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1271 267 214 0 0 chr12 89918215 89918285 -31339245 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1271 596 38 13 0 chr12 89918288 89918367 -31339163 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 7 1271 441 0 0 0 chr12 89918884 89918933 -31338597 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1271 240 161 0 0 chr12 89919679 89919741 -31337789 + GA-rich Low_complexity Low_complexity 1 62 0 7 1271 324 0 0 0 chr12 89919895 89919931 -31337599 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1271 2947 309 106 10 chr12 89920639 89920736 -31336794 + Lx8 LINE L1 6051 6162 -1311 7 1271 333 0 0 0 chr12 89920736 89920773 -31336757 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1271 2947 309 106 10 chr12 89920773 89921968 -31335562 + Lx8 LINE L1 6163 7466 -7 7 1271 465 34 0 0 chr12 89922181 89922240 -31335290 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1271 229 202 86 43 chr12 89922266 89922359 -31335171 + L1MA9 LINE L1 6206 6302 -10 7 1271 503 286 65 114 chr12 89922456 89922575 -31334955 - MLT1A LTR MaLR -8 366 253 7 1271 192 40 0 0 chr12 89922575 89922600 -31334930 + (TGG)n Simple_repeat Simple_repeat 1 25 0 7 1271 503 286 65 114 chr12 89922600 89922847 -31334683 - MLT1A LTR MaLR -122 252 18 7 1271 1340 191 19 35 chr12 89923354 89923615 -31333915 + Lx5 LINE L1 6793 7049 -1 7 1271 609 243 63 21 chr12 89923675 89923818 -31333712 - RSINE1 SINE B4 -15 150 2 7 1271 252 0 0 0 chr12 89923891 89923919 -31333611 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1271 288 305 111 28 chr12 89924261 89924369 -31333161 + PB1D10 SINE Alu 3 119 -1 7 1271 23 33 0 0 chr12 89925317 89925347 -31332183 + AT_rich Low_complexity Low_complexity 1 30 0 7 1271 517 332 10 35 chr12 89925587 89925748 -31331782 + B3A SINE B2 1 162 -36 7 1271 617 69 11 0 chr12 89925748 89925835 -31331695 + (TC)n Simple_repeat Simple_repeat 1 88 0 7 1271 517 332 10 35 chr12 89925835 89925873 -31331657 + B3A SINE B2 163 195 -3 7 1271 332 332 91 45 chr12 89925982 89926181 -31331349 + MIRb SINE MIR 53 260 -8 7 1271 7668 19 7 2 chr12 89928338 89929222 -31328308 + L1Md_T LINE L1 4699 5586 -297 7 1271 8609 53 0 0 chr12 89929222 89930218 -31327312 + L1Md_T LINE L1 5587 6582 0 7 1271 2016 180 75 28 chr12 89930549 89930577 -31326953 + MTC LTR MaLR 1 28 -393 7 1271 7328 69 24 8 chr12 89930577 89931491 -31326039 + RLTR13B3 LTR ERVK 1 929 0 7 1271 2016 180 75 28 chr12 89931491 89931862 -31325668 + MTC LTR MaLR 29 419 -2 7 1271 348 340 13 39 chr12 89933842 89933998 -31323532 - MARNA DNA Mariner -48 538 387 7 1271 23 0 0 0 chr12 89933998 89934021 -31323509 + AT_rich Low_complexity Low_complexity 1 23 0 7 1271 898 272 90 26 chr12 89934280 89934548 -31322982 + B4A SINE B4 2 286 -6 7 1271 604 284 0 22 chr12 89934650 89934787 -31322743 - RSINE1 SINE B4 -28 137 4 7 1271 948 223 53 11 chr12 89935195 89935385 -31322145 - B3 SINE B2 -11 205 8 7 1271 564 140 0 0 chr12 89935402 89935495 -31322035 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 7 1271 221 176 101 7 chr12 89935502 89935651 -31321879 + (TA)n Simple_repeat Simple_repeat 1 163 0 7 1271 224 248 25 58 chr12 89935598 89935675 -31321855 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 7 1271 350 42 21 0 chr12 89935675 89935723 -31321807 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1271 224 248 25 58 chr12 89935723 89935765 -31321765 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 7 1271 186 103 0 0 chr12 89935994 89936023 -31321507 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1271 849 88 7 14 chr12 89936126 89936265 -31321265 + (GGAGAA)n Simple_repeat Simple_repeat 6 143 0 8 1271 257 356 6 0 chr12 89936527 89936687 -31320843 + (TATATG)n Simple_repeat Simple_repeat 5 165 0 8 1271 1171 89 0 14 chr12 89936922 89937070 -31320460 - B1_Mus1 SINE Alu 0 148 3 8 1271 222 346 99 0 chr12 89937315 89937416 -31320114 + L2a LINE L2 3272 3382 -44 8 1271 408 20 0 0 chr12 89937521 89937570 -31319960 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1271 224 314 28 37 chr12 89937818 89937927 -31319603 - L2c LINE L2 -269 3118 3011 8 1271 234 321 125 36 chr12 89937935 89938103 -31319427 - MLT1L LTR MaLR -8 602 420 8 1271 346 327 108 39 chr12 89938176 89938408 -31319122 - MLT1L LTR MaLR -313 297 50 8 1271 825 175 0 0 chr12 89939175 89939341 -31318189 + CT-rich Low_complexity Low_complexity 1 166 0 8 1271 5108 112 20 8 chr12 89940483 89941241 -31316289 - Lx LINE L1 -23 6631 5865 8 1271 588 29 0 0 chr12 89941241 89941311 -31316219 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 8 1271 2240 65 0 0 chr12 89941329 89941604 -31315926 + Lx LINE L1 5587 5861 -793 8 1271 190 329 112 12 chr12 89943117 89943197 -31314333 + L3 LINE CR1 3352 3439 -1050 8 1271 212 143 0 0 chr12 89943730 89943765 -31313765 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 8 1271 205 223 64 12 chr12 89944695 89944776 -31312754 - MIRb SINE MIR -68 200 107 8 1271 265 321 54 67 chr12 89946244 89946468 -31311062 - L2c LINE L2 -232 3155 2935 8 1271 305 136 17 0 chr12 89946683 89946742 -31310788 - Lx9 LINE L1 -1 7643 7584 8 1271 1041 231 51 102 chr12 89946742 89947074 -31310456 - Lx9 LINE L1 -1044 6600 6286 8 1271 530 184 23 31 chr12 89947142 89947271 -31310259 - Lx9 LINE L1 -1592 6052 5925 8 1271 191 36 36 0 chr12 89948183 89948211 -31309319 + (TAA)n Simple_repeat Simple_repeat 3 31 0 8 1271 222 328 18 9 chr12 89948822 89948936 -31308594 - MIR SINE MIR -10 252 138 8 1271 531 242 77 19 chr12 89948977 89949133 -31308397 - RSINE1 SINE B4 0 165 1 8 1271 227 330 11 11 chr12 89949173 89949268 -31308262 - MIRb SINE MIR -161 107 13 8 1271 336 77 0 0 chr12 89950837 89950889 -31306641 + (GTTTG)n Simple_repeat Simple_repeat 3 54 0 8 1271 1125 97 0 0 chr12 89950891 89951036 -31306494 - B1_Mus1 SINE Alu -2 146 2 8 1271 815 276 21 51 chr12 89951297 89951534 -31305996 - B4A SINE B4 -62 230 1 8 1271 325 333 30 0 chr12 89952429 89952528 -31305002 + PB1D7 SINE Alu 8 109 -11 8 1271 421 310 18 72 chr12 89952740 89952925 -31304605 + B4 SINE B4 122 291 -1 8 1271 794 166 0 7 chr12 89953560 89953712 -31303818 + CT-rich Low_complexity Low_complexity 2 152 0 8 1271 1258 222 103 101 chr12 89953721 89954127 -31303403 + MTD LTR MaLR 13 419 0 8 1271 25 31 0 0 chr12 89954127 89954159 -31303371 + AT_rich Low_complexity Low_complexity 1 32 0 8 1271 1172 266 75 13 chr12 89954255 89954528 -31303002 - MTD LTR MaLR -1 418 129 8 1271 798 102 0 0 chr12 89954528 89954646 -31302884 + (TCCA)n Simple_repeat Simple_repeat 1 118 0 8 1271 1172 266 75 13 chr12 89954646 89954756 -31302774 - MTD LTR MaLR -291 128 12 8 1271 208 176 26 105 chr12 89954896 89954972 -31302558 + MIR SINE MIR 109 178 -84 8 1271 890 252 0 15 chr12 89955016 89955213 -31302317 - B3A SINE B2 -4 194 1 8 1271 185 306 14 14 chr12 89956167 89956240 -31301290 - MIR SINE MIR -48 214 142 8 1271 616 294 56 42 chr12 89957649 89957862 -31299668 + ID_B1 SINE B4 8 223 -1 8 1271 231 233 29 19 chr12 89957862 89957967 -31299563 + A-rich Low_complexity Low_complexity 1 106 0 8 1271 364 256 210 26 chr12 89958082 89958315 -31299215 + B4A SINE B4 1 276 -16 8 1271 361 53 0 35 chr12 89958340 89958398 -31299132 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1271 450 0 0 0 chr12 89958821 89958871 -31298659 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1271 848 271 28 36 chr12 89958953 89958968 -31298562 - B4 SINE B4 -44 248 235 8 1271 390 21 0 0 chr12 89958968 89959015 -31298515 + (TATG)n Simple_repeat Simple_repeat 4 50 0 8 1271 449 310 22 45 chr12 89959015 89959194 -31298336 - B3A SINE B2 -19 179 5 8 1271 848 271 28 36 chr12 89959194 89959426 -31298104 - B4 SINE B4 -58 234 3 8 1271 261 0 0 0 chr12 89959692 89959721 -31297809 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1271 254 95 24 0 chr12 89961015 89961057 -31296473 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 8 1271 204 158 0 0 chr12 89961751 89961789 -31295741 + T-rich Low_complexity Low_complexity 1 38 0 8 1271 198 0 0 0 chr12 89962145 89962167 -31295363 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1271 402 21 0 0 chr12 89962273 89962320 -31295210 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1271 675 25 0 0 chr12 89962574 89962655 -31294875 + (TC)n Simple_repeat Simple_repeat 2 82 0 8 1271 23 0 0 0 chr12 89963806 89963829 -31293701 + AT_rich Low_complexity Low_complexity 1 23 0 8 1271 194 91 30 0 chr12 89964390 89964423 -31293107 + (GA)n Simple_repeat Simple_repeat 2 35 0 8 1271 319 311 56 93 chr12 89966748 89967045 -31290485 + L2a LINE L2 3110 3425 -1 8 1271 597 64 0 0 chr12 89967890 89967968 -31289562 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 1271 252 178 0 0 chr12 89968571 89968616 -31288914 + MER94 DNA AcHobo 89 133 -1 8 1271 389 318 69 0 chr12 89968838 89969011 -31288519 - MIRb SINE MIR -9 259 75 8 1271 903 287 42 35 chr12 89970609 89970898 -31286632 + B4A SINE B4 2 292 0 8 1271 251 306 236 64 chr12 89971110 89971267 -31286263 - MIRb SINE MIR -20 248 65 8 1271 396 0 0 0 chr12 89971483 89971527 -31286003 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1271 188 67 0 32 chr12 89972261 89972292 -31285238 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1271 383 310 102 16 chr12 89972511 89972698 -31284832 - L2a LINE L2 0 3426 3224 8 1271 323 300 27 54 chr12 89972766 89972914 -31284616 - MIR SINE MIR -10 252 109 8 1271 315 268 22 52 chr12 89973232 89973366 -31284164 + ID_B1 SINE B4 92 221 -3 8 1271 441 0 0 0 chr12 89973368 89973417 -31284113 + (CCA)n Simple_repeat Simple_repeat 3 51 0 8 1271 194 62 0 30 chr12 89973417 89973450 -31284080 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 1271 4280 72 6 0 chr12 89973871 89974412 -31283118 - L1_Mus1 LINE L1 0 6567 6024 8 1271 264 204 0 0 chr12 89975592 89975652 -31281878 - L2a LINE L2 0 3426 3328 8 1271 294 95 0 0 chr12 89977793 89977835 -31279695 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 8 1271 241 302 2 53 chr12 89978316 89978439 -31279091 - MIR SINE MIR -91 177 60 8 1271 194 247 51 25 chr12 89979675 89979754 -31277776 + L4 LINE RTE 365 445 -1584 8 1271 414 0 0 0 chr12 89980298 89980344 -31277186 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1271 270 56 0 0 chr12 89980372 89980408 -31277122 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1271 429 339 0 0 chr12 89980424 89980542 -31276988 - RSINE1 SINE B4 -36 129 12 8 1271 235 349 20 22 chr12 89980635 89980804 -31276726 + L2b LINE L2 2891 3058 -361 8 1271 765 330 4 17 chr12 89981358 89981589 -31275941 + B4 SINE B4 1 228 -64 8 1271 769 178 13 64 chr12 89981589 89981745 -31275785 + B1_Mur1 SINE Alu 1 148 -1 8 1271 474 18 0 0 chr12 89981955 89982010 -31275520 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 1271 322 104 14 43 chr12 89982107 89982177 -31275353 + C-rich Low_complexity Low_complexity 2 69 0 8 1271 384 171 0 0 chr12 89982293 89982375 -31275155 + T-rich Low_complexity Low_complexity 1 82 0 8 1271 602 39 0 0 chr12 89982382 89982460 -31275070 - B1_Mm SINE Alu -2 145 68 8 1271 769 264 146 33 chr12 89982633 89983073 -31274457 - MER44B DNA MER2_type -46 504 6 8 1271 216 135 0 0 chr12 89983202 89983239 -31274291 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1271 972 119 0 0 chr12 89983602 89983761 -31273769 + (TCCC)n Simple_repeat Simple_repeat 4 162 0 8 1271 189 341 39 54 chr12 89984023 89984153 -31273377 - MIR3 SINE MIR -9 199 72 8 1271 584 87 11 0 chr12 89984881 89984973 -31272557 + (TG)n Simple_repeat Simple_repeat 2 94 0 8 1271 498 75 0 0 chr12 89985927 89985994 -31271536 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 8 1271 189 219 29 72 chr12 89986119 89986188 -31271342 - MIR SINE MIR -91 171 106 8 1271 180 287 106 29 chr12 89986343 89986447 -31271083 - MIRb SINE MIR -120 148 37 8 1271 2238 115 48 3 chr12 89986646 89986977 -31270553 - ORR1A1 LTR MaLR 0 346 1 8 1271 197 296 94 17 chr12 89987305 89987422 -31270108 - L2a LINE L2 0 3426 3301 8 1271 3971 212 30 63 chr12 89987529 89988464 -31269066 - RMER13B LTR ERVK 0 908 5 8 1271 325 298 32 0 chr12 89990972 89991066 -31266464 + CT-rich Low_complexity Low_complexity 2 98 0 8 1271 350 209 133 83 chr12 89991966 89992086 -31265444 + MER5A DNA MER1_type 39 164 -25 8 1271 675 112 0 0 chr12 89993095 89993202 -31264328 + (GA)n Simple_repeat Simple_repeat 2 108 0 8 1271 252 0 0 0 chr12 89994841 89994869 -31262661 + (CATA)n Simple_repeat Simple_repeat 1 28 0 8 1271 1881 236 16 19 chr12 89994873 89995568 -31261962 - Lx9 LINE L1 -1508 6188 5463 8 1271 1571 201 49 60 chr12 89995815 89996319 -31261211 - Lx7 LINE L1 -23 7673 7118 8 1271 719 221 28 0 chr12 89996305 89996450 -31261080 + Lx7 LINE L1 6928 7076 -620 8 1271 515 265 163 0 chr12 89996450 89996597 -31260933 - B4A SINE B4 -120 172 2 8 1271 395 206 0 19 chr12 89996655 89996794 -31260736 + (TG)n Simple_repeat Simple_repeat 1 136 0 8 1271 255 31 0 0 chr12 89996794 89996826 -31260704 + (TC)n Simple_repeat Simple_repeat 2 33 0 8 1271 395 206 0 19 chr12 89996826 89996844 -31260686 + (TG)n Simple_repeat Simple_repeat 1 18 0 8 1271 237 255 0 0 chr12 89996850 89996897 -31260633 - ID4 SINE ID -25 58 12 9 1271 386 174 9 22 chr12 89996903 89996994 -31260536 - PB1D10 SINE Alu -5 144 48 9 1271 417 312 42 42 chr12 89998809 89999093 -31258437 + L3 LINE CR1 4033 4316 -173 9 1271 180 346 120 13 chr12 89999349 89999507 -31258023 - L2c LINE L2 -173 3214 3040 9 1271 246 32 0 0 chr12 90000236 90000267 -31257263 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1271 490 125 0 0 chr12 90001075 90001147 -31256383 - B2_Mm2 SINE B2 -122 73 2 2 1271 188 111 0 27 chr12 90001905 90001942 -31255588 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 3 1271 230 268 0 0 chr12 90002358 90002414 -31255116 + L2a LINE L2 3371 3426 0 4 1271 293 288 101 76 chr12 90002481 90002748 -31254782 - L1ME1 LINE L1 -4 6160 5877 5 1271 229 305 35 92 chr12 90002894 90003035 -31254495 + MIR SINE MIR 128 260 -2 6 1271 226 338 48 139 chr12 90004635 90004800 -31252730 - Charlie15a DNA MER1_type -38 186 37 7 1271 1025 294 37 23 chr12 90005222 90005570 -31251960 - ORR1E LTR MaLR -6 353 1 8 1271 496 367 50 28 chr12 90005573 90005856 -31251674 - LTR16B1 LTR ERVL -188 292 4 9 1271 257 257 120 34 chr12 90006448 90006565 -31250965 + L2b LINE L2 3237 3363 -12 1 1271 473 280 89 6 chr12 90007730 90007899 -31249631 - MTEb LTR MaLR -6 373 191 1 1271 1720 236 37 26 chr12 90008524 90008911 -31248619 - Lx5 LINE L1 0 7050 6671 1 1271 347 322 69 96 chr12 90009196 90009325 -31248205 - MLT1C LTR MaLR -1 466 343 1 1271 1423 78 16 0 chr12 90009325 90009517 -31248013 - B2_Mm2 SINE B2 0 195 1 1 1271 347 322 69 96 chr12 90009517 90009720 -31247810 - MLT1C LTR MaLR -125 342 143 1 1271 964 228 86 73 chr12 90009729 90010042 -31247488 - MTE2b LTR MaLR -2 377 61 1 1271 369 0 0 0 chr12 90010309 90010350 -31247180 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1271 489 255 9 9 chr12 90010375 90010486 -31247044 - PB1D7 SINE Alu -8 112 2 1 1271 481 250 64 29 chr12 90010724 90010864 -31246666 + MER20 DNA MER1_type 73 217 -2 1 1271 279 236 27 14 chr12 90011208 90011281 -31246249 + PB1 SINE Alu 49 122 -5 1 1271 3174 14 0 0 chr12 90011350 90011696 -31245834 - ORR1A0 LTR MaLR 0 346 1 2 1271 632 321 18 18 chr12 90012012 90012297 -31245233 - MLT1B LTR MaLR -86 304 20 2 1271 258 111 0 0 chr12 90012474 90012510 -31245020 - L1_Mus4 LINE L1 -357 6279 6244 2 1271 2524 106 0 0 chr12 90012510 90012869 -31244661 + L1_Mus4 LINE L1 6277 6635 -1 2 1271 504 0 0 0 chr12 90014171 90014227 -31243303 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1271 225 261 0 0 chr12 90015363 90015409 -31242121 - MLT1H2 LTR MaLR -372 117 72 2 1271 204 97 0 0 chr12 90015823 90015854 -31241676 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1271 345 140 0 0 chr12 90016148 90016205 -31241325 + (T)n Simple_repeat Simple_repeat 1 57 0 2 1271 255 297 106 30 chr12 90017015 90017147 -31240383 - RMER1C Other Other -136 1206 1065 2 1271 503 267 17 0 chr12 90017043 90017159 -31240371 - Lx8 LINE L1 -181 7292 7175 2 1271 678 25 0 0 chr12 90017210 90017290 -31240240 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 1271 239 204 53 53 chr12 90017302 90017359 -31240171 - Lx8 LINE L1 -495 6978 6922 2 1271 1229 164 5 0 chr12 90017437 90017656 -31239874 - URR1B DNA MER1_type -5 220 1 3 1271 345 198 0 0 chr12 90018810 90018896 -31238634 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 1271 227 318 0 0 chr12 90018907 90018973 -31238557 + (TATG)n Simple_repeat Simple_repeat 4 69 0 3 1271 774 203 182 0 chr12 90020370 90020557 -31236973 + URR1A DNA MER1_type 1 221 -5 3 1271 253 324 35 35 chr12 90020430 90020574 -31236956 - CYRA11_Mm Unknown Y-chromosome -313 304 161 3 1271 318 206 0 0 chr12 90020896 90020964 -31236566 + (TGG)n Simple_repeat Simple_repeat 3 70 0 3 1271 252 0 0 0 chr12 90021787 90021815 -31235715 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 3 1271 215 216 20 0 chr12 90023190 90023241 -31234289 + C-rich Low_complexity Low_complexity 6 57 0 3 1271 2771 21 37 0 chr12 90023737 90024063 -31233467 + L1Md_F3 LINE L1 6233 6570 -14 3 1271 843 103 14 14 chr12 90024215 90024362 -31233168 + (TTTTC)n Simple_repeat Simple_repeat 1 147 0 3 1271 675 96 29 22 chr12 90024382 90024520 -31233010 + (TTCC)n Simple_repeat Simple_repeat 1 139 0 4 1271 449 331 0 14 chr12 90024540 90024684 -31232846 - B1F1 SINE Alu -7 142 1 4 1271 363 23 0 0 chr12 90025119 90025163 -31232367 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1271 270 0 0 0 chr12 90025163 90025192 -31232338 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1271 712 304 57 13 chr12 90025253 90025483 -31232047 - B4 SINE B4 -10 282 43 4 1271 272 276 26 13 chr12 90025730 90025828 -31231702 - MIR SINE MIR -107 155 64 4 1271 384 77 0 0 chr12 90026032 90026084 -31231446 + (TCC)n Simple_repeat Simple_repeat 1 52 0 4 1271 297 0 0 0 chr12 90026357 90026390 -31231140 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1271 324 0 0 0 chr12 90026390 90026425 -31231105 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1271 648 259 25 25 chr12 90026933 90027131 -31230399 - B3A SINE B2 0 198 1 4 1271 791 93 0 8 chr12 90027134 90027253 -31230277 + (TTTC)n Simple_repeat Simple_repeat 2 119 0 5 1271 1080 94 0 0 chr12 90027253 90027391 -31230139 - B1_Mus1 SINE Alu -10 138 1 5 1271 423 52 0 0 chr12 90027480 90027538 -31229992 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1271 357 43 0 0 chr12 90027538 90027585 -31229945 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1271 229 244 0 0 chr12 90028010 90028051 -31229479 + (CG)n Simple_repeat Simple_repeat 2 42 0 5 1271 336 24 0 0 chr12 90028051 90028092 -31229438 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1271 382 255 127 80 chr12 90028287 90028649 -31228881 - L1ME3A LINE L1 -161 6012 5634 5 1271 257 316 103 22 chr12 90029247 90029383 -31228147 - MLT1K LTR MaLR -39 556 410 5 1271 246 364 50 17 chr12 90029484 90029604 -31227926 - MLT1K LTR MaLR -309 286 163 5 1271 597 14 0 0 chr12 90032103 90032173 -31225357 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1271 460 171 20 7 chr12 90035071 90035224 -31222306 + GA-rich Low_complexity Low_complexity 1 155 0 5 1271 296 56 0 0 chr12 90035172 90035208 -31222322 + (GGA)n Simple_repeat Simple_repeat 3 38 0 6 1271 342 286 81 38 chr12 90035574 90035734 -31221796 + MER5B DNA MER1_type 10 176 -2 6 1271 252 139 23 0 chr12 90036883 90036926 -31220604 - RMER30 DNA MER1_type -152 50 7 6 1271 414 0 0 0 chr12 90037328 90037374 -31220156 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1271 226 0 59 0 chr12 90039577 90039611 -31217919 + (CAGCC)n Simple_repeat Simple_repeat 5 40 0 6 1271 251 247 87 33 chr12 90040413 90040505 -31217025 - MIR SINE MIR -56 206 110 6 1271 322 355 109 5 chr12 90040703 90040887 -31216643 - MIR SINE MIR -45 217 15 6 1271 258 347 80 8 chr12 90041962 90042087 -31215443 + Arthur1A DNA Tip100 24 157 -20 6 1271 579 232 0 0 chr12 90043006 90043161 -31214369 + (TG)n Simple_repeat Simple_repeat 1 155 0 6 1271 640 306 105 76 chr12 90043166 90043442 -31214088 - B4 SINE B4 0 292 9 6 1271 434 254 66 0 chr12 90044678 90044800 -31212730 - RMER30 DNA MER1_type -2 200 71 7 1271 1000 236 10 0 chr12 90045007 90045210 -31212320 - B3 SINE B2 -5 211 7 7 1271 7767 70 12 1 chr12 90045233 90046321 -31211209 - L1_Mus1 LINE L1 0 6567 5468 7 1272 223 297 14 0 chr12 90047293 90047367 -31210163 + L3 LINE CR1 4123 4197 -292 7 1272 2703 144 57 15 chr12 90047692 90048163 -31209367 - Lx2B LINE L1 -2 6998 6508 7 1272 297 75 0 0 chr12 90049243 90049283 -31208247 - MTD LTR MaLR -379 40 1 7 1272 1726 163 121 11 chr12 90049783 90050131 -31207399 + RMER4A LTR ERVK 6 391 -75 7 1272 246 323 0 0 chr12 90050131 90050193 -31207337 + polypyrimidine Low_complexity Low_complexity 1 62 0 7 1272 527 153 90 36 chr12 90050193 90050330 -31207200 + RMER4A LTR ERVK 346 585 0 7 1272 253 247 110 0 chr12 90051134 90051207 -31206323 - L2a LINE L2 -10 3416 3336 7 1272 2809 41 0 3 chr12 90051404 90051745 -31205785 - L1Md_F3 LINE L1 0 6584 6245 7 1272 1860 9 0 0 chr12 90051893 90052103 -31205427 + L1Md_A LINE L1 6373 6582 0 8 1272 213 271 82 21 chr12 90052137 90052265 -31205265 - MIR SINE MIR -92 176 35 8 1272 186 43 0 0 chr12 90053409 90053432 -31204098 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1272 2904 323 64 27 chr12 90053524 90054766 -31202764 - Lx8 LINE L1 -59 7414 6127 8 1272 252 225 69 14 chr12 90055797 90055869 -31201661 - MIR SINE MIR -113 149 74 8 1272 279 0 0 0 chr12 90056465 90056496 -31201034 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 8 1272 221 111 18 53 chr12 90056590 90056632 -31200898 + T-rich Low_complexity Low_complexity 17 56 0 8 1272 1281 61 0 0 chr12 90056632 90056779 -31200751 - B1_Mm SINE Alu 0 147 1 8 1272 221 111 18 53 chr12 90056779 90056793 -31200737 + T-rich Low_complexity Low_complexity 2 16 0 8 1272 491 245 9 9 chr12 90058312 90058423 -31199107 + PB1D7 SINE Alu 1 111 -9 8 1272 267 335 46 39 chr12 90060763 90060903 -31196627 - MIRb SINE MIR -38 230 83 9 1272 980 231 114 30 chr12 90060928 90061227 -31196303 + L1MB3 LINE L1 5767 6090 -93 9 1272 229 184 0 58 chr12 90061345 90061397 -31196133 + L1MB3 LINE L1 6121 6169 -2 9 1272 374 346 65 16 chr12 90061709 90061894 -31195636 - MIRb SINE MIR -23 245 52 9 1272 382 303 0 0 chr12 90062376 90062475 -31195055 - MIR SINE MIR -6 256 158 9 1272 889 239 78 16 chr12 90062477 90062720 -31194810 + Tigger9b DNA MER2_type 1 258 -366 9 1272 4652 29 0 6 chr12 90062824 90063338 -31194192 + L1Md_F2 LINE L1 6069 6579 -3 9 1272 301 348 0 0 chr12 90064400 90064518 -31193012 + (TG)n Simple_repeat Simple_repeat 1 118 0 9 1272 830 256 185 12 chr12 90064518 90064767 -31192763 - B4 SINE B4 0 292 1 9 1272 440 298 0 16 chr12 90064995 90065118 -31192412 + MIRb SINE MIR 115 235 -33 9 1272 351 0 0 0 chr12 90065133 90065172 -31192358 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1272 261 83 0 0 chr12 90065283 90065319 -31192211 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 1 1272 713 266 61 88 chr12 90065769 90066066 -31191464 - B4A SINE B4 -1 291 3 1 1272 3101 142 26 2 chr12 90066454 90066912 -31190618 - Lx4A LINE L1 0 7058 6590 1 1272 180 320 153 47 chr12 90067481 90067671 -31189859 + L2a LINE L2 3053 3262 -164 1 1272 237 311 122 10 chr12 90067839 90067968 -31189562 - MIRb SINE MIR -96 166 30 1 1272 487 335 133 9 chr12 90068065 90068276 -31189254 - MLT1K LTR MaLR -308 287 51 1 1272 257 272 161 24 chr12 90068937 90069101 -31188429 - MIR SINE MIR -45 217 30 1 1272 476 72 14 0 chr12 90072320 90072389 -31185141 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1272 740 336 42 32 chr12 90072394 90072677 -31184853 + B4 SINE B4 1 286 -6 1 1272 222 333 13 13 chr12 90072779 90072858 -31184672 - L2a LINE L2 -50 3376 3298 1 1272 234 0 0 0 chr12 90073028 90073054 -31184476 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1272 185 358 24 36 chr12 90073797 90073881 -31183649 + L2c LINE L2 3296 3378 -9 1 1272 259 367 72 0 chr12 90075162 90075342 -31182188 + MER58B DNA MER1_type 71 263 -78 1 1272 289 297 121 39 chr12 90075400 90075582 -31181948 + MIR SINE MIR 21 217 -45 1 1272 5193 56 11 8 chr12 90075672 90076299 -31181231 - L1Md_F2 LINE L1 0 6582 5954 1 1272 189 310 0 0 chr12 90076553 90076611 -31180919 - MIRc SINE MIR -121 147 90 1 1272 349 258 62 31 chr12 90076973 90077101 -31180429 - MIR SINE MIR -11 251 120 1 1272 182 377 13 0 chr12 90077215 90077292 -31180238 + L2c LINE L2 3348 3425 -1 1 1272 237 265 25 164 chr12 90077685 90077807 -31179723 + MT2B2 LTR ERVL 154 258 -326 1 1272 425 314 24 24 chr12 90077710 90077837 -31179693 + B1F SINE Alu 9 135 -14 1 1272 473 229 19 19 chr12 90078457 90078564 -31178966 + PB1D10 SINE Alu 2 108 -9 1 1272 194 200 22 22 chr12 90078921 90078967 -31178563 + MER5A DNA MER1_type 144 189 0 1 1272 546 306 137 41 chr12 90079437 90079928 -31177602 - L3 LINE CR1 -195 4294 3757 1 1272 208 306 0 0 chr12 90080542 90080591 -31176939 + (CCA)n Simple_repeat Simple_repeat 1 49 0 1 1272 23 0 0 0 chr12 90080780 90080803 -31176727 + AT_rich Low_complexity Low_complexity 1 23 0 1 1272 342 244 110 0 chr12 90081327 90081409 -31176121 - PB1D10 SINE Alu -6 111 21 1 1272 293 363 11 0 chr12 90081337 90081428 -31176102 - ID_B1 SINE B4 -50 174 83 1 1272 202 344 38 30 chr12 90081466 90081598 -31175932 - L3 LINE CR1 -821 3668 3536 1 1272 582 361 10 38 chr12 90082027 90082315 -31175215 + B4A SINE B4 11 290 -2 1 1272 307 295 135 8 chr12 90082806 90082939 -31174591 + HAL1-3A_ME LINE L1 2288 2437 -421 1 1272 522 67 0 0 chr12 90082979 90083054 -31174476 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 1272 929 270 122 27 chr12 90084774 90085037 -31172493 - B4 SINE B4 -3 289 2 1 1272 828 155 293 0 chr12 90085328 90085502 -31172028 + URR1A DNA MER1_type 1 225 -1 1 1272 314 326 97 23 chr12 90085516 90085692 -31171838 - MIR SINE MIR -73 189 1 1 1272 244 223 101 62 chr12 90085886 90086015 -31171515 - Lx9 LINE L1 0 7644 7511 1 1272 501 17 0 0 chr12 90086448 90086506 -31171024 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1272 216 0 0 0 chr12 90086523 90086547 -31170983 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1272 479 60 15 0 chr12 90087382 90087449 -31170081 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 1 1272 297 220 87 11 chr12 90088256 90088348 -31169182 + L1ME4a LINE L1 6006 6104 -20 1 1272 423 0 0 0 chr12 90088655 90088702 -31168828 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1272 24 53 0 0 chr12 90089269 90089307 -31168223 + AT_rich Low_complexity Low_complexity 1 38 0 1 1272 407 19 19 0 chr12 90090487 90090539 -31166991 + (AATAG)n Simple_repeat Simple_repeat 4 56 0 1 1272 21 0 0 0 chr12 90091686 90091707 -31165823 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 209 243 0 14 chr12 90092912 90092983 -31164547 + CT-rich Low_complexity Low_complexity 5 74 0 1 1272 324 299 73 40 chr12 90093097 90093247 -31164283 - MIRb SINE MIR -10 258 104 1 1272 305 333 26 17 chr12 90095379 90095495 -31162035 - MER102c DNA MER1_type -1 330 214 1 1272 21 0 0 0 chr12 90096519 90096540 -31160990 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 442 159 9 9 chr12 90097821 90097929 -31159601 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 1272 495 0 0 0 chr12 90098804 90098859 -31158671 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1272 441 0 0 0 chr12 90099186 90099235 -31158295 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1272 330 45 0 0 chr12 90100045 90100089 -31157441 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1272 252 0 0 0 chr12 90101463 90101491 -31156039 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1272 366 61 0 0 chr12 90101786 90101835 -31155695 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 1 1272 293 307 105 35 chr12 90101978 90102150 -31155380 - MIR3 SINE MIR -6 202 19 1 1272 21 0 0 0 chr12 90102245 90102266 -31155264 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 522 0 0 0 chr12 90102619 90102677 -31154853 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 1 1272 293 256 41 8 chr12 90103559 90103681 -31153849 + (TA)n Simple_repeat Simple_repeat 1 126 0 1 1272 1145 211 379 7 chr12 90103697 90103995 -31153535 - Lx9 LINE L1 -70 7574 7166 1 1272 33 85 0 0 chr12 90104185 90104267 -31153263 + AT_rich Low_complexity Low_complexity 1 82 0 1 1272 207 88 0 0 chr12 90104511 90104545 -31152985 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1272 222 174 0 0 chr12 90104544 90104590 -31152940 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1272 250 233 0 16 chr12 90104695 90104756 -31152774 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1272 218 391 99 40 chr12 90104778 90105031 -31152499 - B4 SINE B4 -14 278 11 1 1272 270 0 0 0 chr12 90105031 90105061 -31152469 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1272 302 0 26 0 chr12 90105071 90105109 -31152421 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1272 746 302 61 19 chr12 90105197 90105460 -31152070 + B4 SINE B4 1 274 -18 1 1272 427 320 112 47 chr12 90105587 90105820 -31151710 - MLT1J2 LTR MaLR 0 448 201 1 1272 180 0 0 0 chr12 90106675 90106695 -31150835 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1272 297 0 0 0 chr12 90107388 90107421 -31150109 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1272 333 47 0 0 chr12 90107709 90107752 -31149778 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1272 534 118 0 0 chr12 90107752 90107854 -31149676 + (GA)n Simple_repeat Simple_repeat 1 102 0 1 1272 310 270 302 33 chr12 90107857 90108181 -31149349 - MLT2B1 LTR ERVL -72 448 23 1 1272 1623 291 137 3 chr12 90108202 90108851 -31148679 - ERVL-B4-int LTR ERVL -1 5713 4978 1 1272 390 292 13 39 chr12 90109906 90110059 -31147471 - MER5A1 DNA MER1_type 0 166 18 1 1272 271 198 18 5 chr12 90111750 90111810 -31145720 - MIRc SINE MIR -98 178 113 1 1272 281 89 0 22 chr12 90112317 90112363 -31145167 + (TTTTC)n Simple_repeat Simple_repeat 2 46 0 1 1272 226 267 191 43 chr12 90113919 90114107 -31143423 + MIRc SINE MIR 52 267 -1 1 1272 268 267 131 16 chr12 90116012 90116134 -31141396 + MIR SINE MIR 127 262 0 1 1272 232 324 0 14 chr12 90116449 90116521 -31141009 - MTEb LTR MaLR -31 348 278 1 1272 254 358 12 0 chr12 90117002 90117083 -31140447 + MER81 DNA AcHobo 32 113 -1 1 1272 628 262 28 0 chr12 90117318 90117463 -31140067 - RSINE1 SINE B4 -14 151 3 1 1272 337 280 174 67 chr12 90118023 90118218 -31139312 + MIRb SINE MIR 24 239 -29 1 1272 270 353 117 21 chr12 90118741 90118929 -31138601 - L2a LINE L2 0 3426 3221 1 1272 1906 169 60 35 chr12 90119214 90119583 -31137947 - ORR1C1 LTR MaLR 0 378 1 1 1272 432 266 55 24 chr12 90121943 90122070 -31135460 - ID_B1 SINE B4 -14 210 80 1 1272 2559 62 0 24 chr12 90122165 90122317 -31135213 + L1_Mus2 LINE L1 6247 6397 -169 1 1272 3220 61 5 8 chr12 90122317 90122714 -31134816 + MTA_Mm LTR MaLR 1 396 0 1 1272 2559 62 0 24 chr12 90122714 90122889 -31134641 + L1_Mus2 LINE L1 6398 6566 0 1 1272 24 0 0 0 chr12 90123150 90123174 -31134356 + AT_rich Low_complexity Low_complexity 1 24 0 1 1272 600 14 0 0 chr12 90123624 90123693 -31133837 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 1 1272 319 354 61 7 chr12 90124305 90124453 -31133077 + MIRb SINE MIR 39 194 -74 1 1272 224 217 0 48 chr12 90124507 90124570 -31132960 + CT-rich Low_complexity Low_complexity 3 62 0 1 1272 555 273 102 77 chr12 90125486 90125967 -31131563 - L2 LINE L2 -396 3023 2531 1 1272 243 247 0 64 chr12 90126312 90126390 -31131140 - L2 LINE L2 -1044 2375 2303 1 1272 1009 301 17 34 chr12 90126752 90127048 -31130482 - B4 SINE B4 0 292 2 1 1272 33 25 0 0 chr12 90127835 90127875 -31129655 + AT_rich Low_complexity Low_complexity 1 40 0 1 1272 546 325 66 28 chr12 90128618 90128830 -31128700 + MTE2b LTR MaLR 1 220 -159 1 1272 1470 136 18 0 chr12 90129375 90129595 -31127935 + URR1B DNA MER1_type 2 225 0 1 1272 334 283 18 28 chr12 90130018 90130127 -31127403 - MER3 DNA MER1_type -2 207 100 1 1272 949 294 17 73 chr12 90130166 90130467 -31127063 - B4 SINE B4 -8 284 1 1 1272 265 192 147 92 chr12 90130467 90130494 -31127036 - MER3 DNA MER1_type -98 111 76 1 1272 387 0 0 0 chr12 90130494 90130537 -31126993 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1272 265 192 147 92 chr12 90130537 90130610 -31126920 - MER3 DNA MER1_type -134 75 2 1 1272 339 346 10 10 chr12 90131339 90131441 -31126089 - B1F1 SINE Alu -44 105 4 1 1272 181 310 83 14 chr12 90131507 90131579 -31125951 - MIRc SINE MIR -142 126 50 1 1272 191 213 85 0 chr12 90132230 90132277 -31125253 - MER5B DNA MER1_type 0 178 128 1 1272 306 365 29 7 chr12 90132622 90132760 -31124770 + B1F1 SINE Alu 1 141 -8 1 1272 834 249 66 0 chr12 90132807 90132988 -31124542 + B4A SINE B4 10 202 -90 2 1272 339 330 118 28 chr12 90132971 90133149 -31124381 - MLT1H LTR MaLR -280 269 76 2 1272 287 175 48 0 chr12 90133327 90133390 -31124140 - MER53 DNA hAT -91 102 37 2 1272 307 287 19 47 chr12 90133553 90133659 -31123871 - MER5A1 DNA MER1_type -62 104 2 2 1272 476 319 55 50 chr12 90133667 90133868 -31123662 - MER58A DNA MER1_type -19 205 4 2 1272 430 49 11 0 chr12 90134054 90134114 -31123416 + L1Md_F2 LINE L1 5540 5616 -675 2 1272 8952 36 0 5 chr12 90134114 90135114 -31122416 + L1Md_F2 LINE L1 5588 6582 0 2 1272 313 242 0 16 chr12 90135375 90135438 -31122092 - MER81 DNA AcHobo -9 105 44 2 1272 405 274 75 29 chr12 90135768 90135990 -31121540 - MIR SINE MIR -2 260 28 2 1272 180 356 23 11 chr12 90136604 90136692 -31120838 - MIR SINE MIR -75 133 45 2 1272 349 262 180 33 chr12 90136748 90136898 -31120632 + MER5B DNA MER1_type 2 173 -5 2 1272 345 277 145 47 chr12 90137682 90137875 -31119655 + MER44A DNA MER2_type 1 212 -127 2 1272 273 293 49 57 chr12 90138206 90138329 -31119201 + MER44A DNA MER2_type 215 336 -3 2 1272 223 298 55 74 chr12 90139965 90140117 -31117413 - MIRc SINE MIR -86 190 33 2 1272 244 329 63 21 chr12 90141661 90141804 -31115726 + MER5A DNA MER1_type 16 164 -25 2 1272 187 275 0 0 chr12 90142661 90142701 -31114829 + MIRm SINE MIR 156 195 -81 2 1272 308 333 60 74 chr12 90144165 90144583 -31112947 - L1M5 LINE L1 -865 5281 4870 2 1272 458 286 65 53 chr12 90144700 90144870 -31112660 + B4A SINE B4 1 172 -120 2 1272 405 0 0 0 chr12 90144871 90144916 -31112614 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1272 444 51 0 0 chr12 90145211 90145270 -31112260 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1272 197 314 0 16 chr12 90145694 90145775 -31111755 - MIR SINE MIR -45 163 86 2 1272 500 342 21 40 chr12 90145858 90146121 -31111409 - MLT1A1 LTR MaLR -35 373 150 2 1272 292 239 30 0 chr12 90146094 90146161 -31111369 - RSINE1 SINE B4 -95 70 2 2 1272 835 278 110 0 chr12 90146492 90146719 -31110811 - Lx9 LINE L1 -1028 6616 6365 2 1272 261 0 0 0 chr12 90146733 90146762 -31110768 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1272 253 333 0 0 chr12 90147388 90147454 -31110076 - ID4 SINE ID -16 67 2 2 1272 505 271 58 32 chr12 90148242 90148398 -31109132 + B4 SINE B4 122 281 -11 2 1272 195 288 13 27 chr12 90150275 90150350 -31107180 + MIRc SINE MIR 45 118 -150 2 1272 8304 27 2 2 chr12 90150365 90151323 -31106207 - L1Md_T LINE L1 0 6582 5625 2 1272 217 231 172 103 chr12 90151455 90151571 -31105959 - MIRb SINE MIR -128 140 17 2 1272 250 245 0 19 chr12 90151903 90151957 -31105573 - B2_Mm2 SINE B2 -142 53 1 2 1272 391 302 12 65 chr12 90152014 90152184 -31105346 - MER5B DNA MER1_type 0 178 18 2 1272 286 333 50 10 chr12 90152218 90152318 -31105212 + MER45A DNA Tip100 74 177 -1 2 1272 204 344 34 79 chr12 90152987 90153164 -31104366 + MER5A DNA MER1_type 21 189 0 2 1272 252 339 241 0 chr12 90153275 90153470 -31104060 + MIR SINE MIR 1 242 -20 2 1272 183 42 0 0 chr12 90155693 90155717 -31101813 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1272 387 165 0 0 chr12 90156167 90156284 -31101246 + CT-rich Low_complexity Low_complexity 1 117 0 2 1272 196 306 69 0 chr12 90156319 90156391 -31101139 - MIRc SINE MIR -189 79 3 2 1272 396 314 15 69 chr12 90157204 90157406 -31100124 + Charlie7 DNA MER1_type 250 440 -2172 2 1272 731 318 63 26 chr12 90157464 90157923 -31099607 - Lx9 LINE L1 -44 7600 7125 2 1272 493 283 72 110 chr12 90158019 90158392 -31099138 - ORR1E LTR MaLR 0 359 1 2 1272 252 244 76 13 chr12 90158851 90158930 -31098600 - L2a LINE L2 -5 3421 3338 2 1272 22 0 0 0 chr12 90159005 90159027 -31098503 + AT_rich Low_complexity Low_complexity 1 22 0 2 1272 239 333 18 44 chr12 90159219 90159332 -31098198 + MIRb SINE MIR 145 254 -14 2 1272 455 0 0 18 chr12 90159982 90160038 -31097492 + (TTA)n Simple_repeat Simple_repeat 3 57 0 2 1272 734 143 0 8 chr12 90160367 90160501 -31097029 + GA-rich Low_complexity Low_complexity 1 133 0 2 1272 252 250 83 0 chr12 90161593 90161653 -31095877 - MIRc SINE MIR -93 175 111 2 1272 537 223 10 0 chr12 90162972 90163075 -31094455 + B1F2 SINE Alu 25 128 -21 2 1272 421 267 28 28 chr12 90163093 90163201 -31094329 + PB1D10 SINE Alu 1 108 -9 2 1272 187 273 179 15 chr12 90164409 90164543 -31092987 - L3 LINE CR1 -294 4195 4040 2 1272 211 333 0 13 chr12 90164582 90164658 -31092872 - L2c LINE L2 0 3387 3313 2 1272 321 100 0 0 chr12 90164821 90164871 -31092659 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1272 480 280 25 51 chr12 90165148 90165306 -31092224 - MER102c DNA MER1_type -112 219 66 2 1272 381 240 125 0 chr12 90165310 90165414 -31092116 + L1MD1 LINE L1 16 132 -6501 2 1272 715 276 118 40 chr12 90165712 90166192 -31091338 + Lx7 LINE L1 5536 6073 -1623 2 1272 253 189 0 42 chr12 90166471 90166543 -31090987 + CT-rich Low_complexity Low_complexity 1 69 0 2 1272 295 299 96 82 chr12 90166546 90166765 -31090765 - MLT1B LTR MaLR -159 231 10 2 1272 2427 264 129 30 chr12 90166771 90168046 -31089484 + L1MD1 LINE L1 3006 4406 -2131 2 1272 350 257 108 28 chr12 90168050 90168226 -31089304 + L1MD1 LINE L1 5487 5676 -861 2 1272 417 316 90 22 chr12 90168417 90168782 -31088748 + L1MD1 LINE L1 5863 6252 -381 2 1272 229 295 85 27 chr12 90168941 90169129 -31088401 + L1MD1 LINE L1 6335 6533 -100 2 1272 646 280 21 3 chr12 90169131 90169302 -31088228 + B3A SINE B2 5 184 -9 2 1272 226 318 11 23 chr12 90170903 90170990 -31086540 + MIRc SINE MIR 88 173 -95 2 1272 302 292 10 30 chr12 90171538 90171637 -31085893 + MIR3 SINE MIR 67 163 -45 2 1272 261 369 25 57 chr12 90171708 90171866 -31085664 - Charlie15a DNA MER1_type -71 153 1 2 1272 1736 165 38 22 chr12 90172690 90173006 -31084524 + ORR1A4 LTR MaLR 1 321 -8 2 1272 1021 226 14 9 chr12 90174016 90174230 -31083300 - B3 SINE B2 0 216 2 2 1272 218 158 17 50 chr12 90174834 90174894 -31082636 + T-rich Low_complexity Low_complexity 2 59 0 2 1272 262 331 59 30 chr12 90175168 90175327 -31082203 - MIRb SINE MIR -95 173 10 2 1272 240 353 88 66 chr12 90175671 90175853 -31081677 - ORR1E LTR MaLR -167 192 7 2 1272 590 0 14 0 chr12 90175992 90176062 -31081468 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1272 1200 55 0 0 chr12 90176062 90176207 -31081323 - B1_Mus2 SINE Alu -2 145 1 2 1272 181 310 100 33 chr12 90176624 90176714 -31080816 - MIRc SINE MIR -155 113 18 2 1272 464 333 42 0 chr12 90177043 90177208 -31080322 + MER58A DNA MER1_type 49 220 -4 2 1272 870 59 68 0 chr12 90177383 90177501 -31080029 - B1_Mm SINE Alu -21 126 1 2 1273 24 0 0 0 chr12 90177851 90177875 -31079655 + AT_rich Low_complexity Low_complexity 1 24 0 2 1273 210 118 0 0 chr12 90178017 90178051 -31079479 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1273 895 247 95 23 chr12 90178059 90178467 -31079063 - L1MA5A LINE L1 -365 5935 5517 2 1273 6354 80 10 9 chr12 90178611 90179508 -31078022 - Lx3_Mus LINE L1 0 7009 6112 2 1273 412 328 38 22 chr12 90180269 90180453 -31077077 + MER58A DNA MER1_type 38 224 0 2 1273 339 269 13 46 chr12 90183530 90183682 -31073848 - L1MD LINE L1 -883 5476 5330 2 1273 1678 290 108 76 chr12 90183734 90184126 -31073404 - L1MD LINE L1 -890 5256 4879 2 1273 270 0 0 0 chr12 90184126 90184156 -31073374 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1273 1678 290 108 76 chr12 90184156 90185551 -31071979 - L1MD LINE L1 -1268 4878 3409 2 1273 405 0 0 0 chr12 90185551 90185596 -31071934 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1273 1678 290 108 76 chr12 90185596 90185907 -31071623 - L1MD LINE L1 -2738 3408 3090 2 1273 1204 21 14 0 chr12 90185912 90186057 -31071473 - B1_Mus2 SINE Alu 0 147 1 2 1273 259 172 17 33 chr12 90186301 90186361 -31071169 + RMER15 LTR ERVL 399 457 -118 2 1273 185 0 40 0 chr12 90186371 90186396 -31071134 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1273 21 82 0 0 chr12 90186509 90186558 -31070972 + AT_rich Low_complexity Low_complexity 1 49 0 2 1273 379 279 136 16 chr12 90186579 90187013 -31070517 - L1MD LINE L1 -3117 3029 2544 2 1273 1115 48 14 20 chr12 90187102 90187250 -31070280 - B1_Mm SINE Alu 0 147 1 2 1273 377 342 9 4 chr12 90187262 90187491 -31070039 + L1MD LINE L1 2205 2434 -3712 2 1273 494 198 21 10 chr12 90189133 90189230 -31068300 - MLT1A0 LTR MaLR -41 324 227 2 1273 363 290 108 7 chr12 90189247 90189386 -31068144 - MLT1A0 LTR MaLR -205 160 8 2 1273 249 236 110 14 chr12 90189468 90189541 -31067989 - MamSINE1 SINE tRNA -202 88 9 2 1273 213 360 99 61 chr12 90190386 90190519 -31067011 + MIRc SINE MIR 4 157 -111 2 1273 2574 121 37 7 chr12 90190519 90190928 -31066602 + MTC LTR MaLR 1 421 0 2 1273 213 382 25 50 chr12 90190928 90191017 -31066513 + MIRc SINE MIR 158 243 -25 2 1273 862 249 9 41 chr12 90193972 90194190 -31063340 - ID_B1 SINE B4 -13 211 1 2 1273 256 307 100 39 chr12 90194274 90194405 -31063125 - MIRb SINE MIR -64 204 59 2 1273 1349 158 9 22 chr12 90194708 90194935 -31062595 - URR1B DNA MER1_type 0 225 2 2 1273 419 0 20 0 chr12 90194980 90195031 -31062499 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1273 243 0 0 0 chr12 90195839 90195866 -31061664 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1273 254 213 40 0 chr12 90196406 90196481 -31061049 - Lx8 LINE L1 -1 7472 7395 2 1273 273 276 10 31 chr12 90196529 90196626 -31060904 + RMER12 LTR ERVK 750 844 -478 2 1273 978 147 121 0 chr12 90198858 90199048 -31058482 - URR1A DNA MER1_type -1 225 13 2 1273 283 304 95 20 chr12 90200101 90200249 -31057281 + MIRb SINE MIR 42 200 -68 2 1273 292 229 0 35 chr12 90200499 90200585 -31056945 + L3 LINE CR1 4403 4485 -4 2 1273 1684 68 0 12 chr12 90201181 90201433 -31056097 - L1_Mur1 LINE L1 -2215 3671 3423 2 1273 566 294 26 52 chr12 90201469 90201663 -31055867 - B3 SINE B2 0 216 28 2 1273 273 364 10 0 chr12 90201715 90201814 -31055716 - MIR SINE MIR -155 107 8 2 1273 22 35 0 0 chr12 90202032 90202061 -31055469 + AT_rich Low_complexity Low_complexity 1 29 0 3 1273 270 304 44 18 chr12 90202123 90202237 -31055293 - LTR16A1 LTR ERVL -6 450 334 3 1273 188 387 81 0 chr12 90203025 90203149 -31054381 - MIR SINE MIR -88 174 41 3 1273 433 320 62 19 chr12 90203200 90203410 -31054120 - MIRb SINE MIR -5 263 45 3 1273 35 24 0 0 chr12 90203641 90203683 -31053847 + AT_rich Low_complexity Low_complexity 1 42 0 3 1273 341 75 19 0 chr12 90203867 90203920 -31053610 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1273 1173 175 13 9 chr12 90204738 90204963 -31052567 - URR1A DNA MER1_type 0 226 1 3 1273 1040 240 14 5 chr12 90205343 90205552 -31051978 + B3 SINE B2 1 211 -5 3 1273 231 320 29 88 chr12 90206085 90206222 -31051308 + RLTR23 LTR ERV1 253 381 -49 3 1273 414 0 0 0 chr12 90206869 90206915 -31050615 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1273 921 71 95 0 chr12 90208207 90208333 -31049197 - B1_Mus1 SINE Alu -9 139 2 3 1273 257 27 54 0 chr12 90208334 90208371 -31049159 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1273 4464 51 0 7 chr12 90208786 90209341 -31048189 + L1_Mus1 LINE L1 6016 6566 -1 3 1273 185 0 40 0 chr12 90210074 90210099 -31047431 + (CTTAT)n Simple_repeat Simple_repeat 1 26 0 3 1273 389 269 35 34 chr12 90211371 90211526 -31046004 - MER34 LTR ERV1 -3 568 382 3 1273 516 309 0 0 chr12 90212855 90212991 -31044539 + B1F SINE Alu 3 138 -11 3 1273 256 256 8 24 chr12 90213634 90213758 -31043772 + GA-rich Low_complexity Low_complexity 5 126 0 3 1273 1043 282 33 47 chr12 90213775 90214124 -31043406 - MLT2B4 LTR ERVL -107 449 7 3 1273 206 323 0 0 chr12 90214129 90214194 -31043336 + (CCCTAA)n Simple_repeat Simple_repeat 3 67 0 3 1273 185 325 65 73 chr12 90214886 90215009 -31042521 - MIR3 SINE MIR -49 159 38 3 1273 306 50 0 0 chr12 90215337 90215377 -31042153 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1273 366 61 0 0 chr12 90215409 90215458 -31042072 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1273 513 0 0 0 chr12 90215458 90215514 -31042016 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1273 1613 89 81 0 chr12 90216192 90216428 -31041102 + L1_Mus1 LINE L1 6313 6567 0 3 1273 1284 156 4 39 chr12 90216464 90216697 -31040833 + URR1A DNA MER1_type 1 225 -1 3 1273 1853 177 30 6 chr12 90216895 90217259 -31040271 + ORR1D1 LTR MaLR 1 373 -1 3 1273 204 0 54 27 chr12 90218220 90218257 -31039273 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 3 1273 245 286 13 13 chr12 90218296 90218374 -31039156 - MLT1C LTR MaLR -11 613 536 3 1273 642 232 135 12 chr12 90218400 90218570 -31038960 + ORR1D1 LTR MaLR 1 191 -183 3 1273 341 282 100 10 chr12 90218801 90218933 -31038597 - MLT1C LTR MaLR -36 431 224 3 1273 418 287 16 0 chr12 90218983 90219105 -31038425 - MLT1C LTR MaLR -343 124 1 3 1273 3276 242 80 24 chr12 90220040 90220955 -31036575 - RCHARR1 DNA MER1_type -2 972 7 3 1273 391 308 53 67 chr12 90221907 90222116 -31035414 - MIR SINE MIR -27 235 30 3 1273 360 277 0 38 chr12 90222120 90222225 -31035305 - Lx7 LINE L1 -421 7275 7175 3 1273 333 140 0 0 chr12 90222749 90222806 -31034724 + (TTA)n Simple_repeat Simple_repeat 2 58 0 3 1273 1197 239 138 21 chr12 90223861 90224029 -31033501 - MTEb LTR MaLR -5 374 187 3 1273 492 18 0 0 chr12 90224029 90224086 -31033444 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1273 1197 239 138 21 chr12 90224086 90224250 -31033280 - MTEb LTR MaLR -193 186 4 3 1273 23 0 0 0 chr12 90224487 90224510 -31033020 + AT_rich Low_complexity Low_complexity 1 23 0 3 1273 223 270 87 33 chr12 90224778 90224870 -31032660 - MIRc SINE MIR -17 251 155 3 1273 272 329 0 0 chr12 90224969 90225042 -31032488 + ID2 SINE ID 4 76 -7 3 1273 23 33 0 0 chr12 90225086 90225116 -31032414 + AT_rich Low_complexity Low_complexity 1 30 0 3 1273 747 242 88 0 chr12 90225135 90225329 -31032201 - B3 SINE B2 -4 212 2 3 1273 444 67 0 0 chr12 90225611 90225671 -31031859 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1273 1308 246 92 12 chr12 90227546 90227892 -31029638 - MTEb LTR MaLR -5 374 1 3 1273 220 361 63 25 chr12 90228392 90228551 -31028979 - MIRb SINE MIR -20 248 84 3 1273 198 0 0 0 chr12 90228571 90228593 -31028937 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1273 332 356 69 40 chr12 90229279 90229481 -31028049 + MIRc SINE MIR 13 220 -48 3 1273 483 100 0 0 chr12 90231160 90231230 -31026300 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 3 1273 1026 152 0 0 chr12 90231233 90231410 -31026120 + CT-rich Low_complexity Low_complexity 2 178 0 3 1273 825 308 16 83 chr12 90231658 90231970 -31025560 + B4A SINE B4 2 292 0 3 1273 685 297 10 15 chr12 90232063 90232268 -31025262 - B3 SINE B2 -10 206 3 3 1273 413 254 142 40 chr12 90232280 90232456 -31025074 - B3A SINE B2 -1 197 4 3 1273 3162 280 88 19 chr12 90232492 90233391 -31024139 - Lx8 LINE L1 -9 7464 6514 3 1273 183 42 0 0 chr12 90233391 90233415 -31024115 + (CCCCAA)n Simple_repeat Simple_repeat 1 24 0 3 1273 3162 280 88 19 chr12 90233415 90233719 -31023811 - Lx8 LINE L1 -960 6513 6168 3 1273 228 67 0 0 chr12 90233719 90233749 -31023781 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1273 3162 280 88 19 chr12 90233749 90233838 -31023692 - Lx8 LINE L1 -1306 6167 6083 3 1273 207 364 0 10 chr12 90235489 90235589 -31021941 + MIRb SINE MIR 148 246 -22 3 1273 290 358 104 0 chr12 90236289 90236482 -31021048 + MIR SINE MIR 2 214 -48 3 1273 203 309 52 21 chr12 90236479 90236575 -31020955 - MIRb SINE MIR -103 165 67 3 1273 620 302 42 110 chr12 90237047 90237430 -31020100 + ORR1E LTR MaLR 3 359 0 3 1273 1070 133 0 39 chr12 90237476 90237656 -31019874 + B2_Mm2 SINE B2 6 178 -17 3 1273 23 0 0 0 chr12 90237673 90237696 -31019834 + AT_rich Low_complexity Low_complexity 1 23 0 3 1273 24 0 0 0 chr12 90237942 90237966 -31019564 + AT_rich Low_complexity Low_complexity 1 24 0 3 1273 1214 319 50 23 chr12 90238320 90238757 -31018773 + MLT1C LTR MaLR 18 466 -1 3 1273 280 327 98 25 chr12 90238976 90239139 -31018391 + MER5B DNA MER1_type 4 178 0 3 1273 198 241 86 69 chr12 90239168 90239226 -31018304 - L4 LINE RTE -491 1538 1480 3 1273 198 338 13 90 chr12 90239255 90239333 -31018197 + L2b LINE L2 3275 3346 -29 3 1273 25 0 0 0 chr12 90240460 90240485 -31017045 + AT_rich Low_complexity Low_complexity 1 25 0 3 1273 851 301 0 72 chr12 90241682 90241904 -31015626 + B3 SINE B2 1 206 -10 3 1273 342 258 0 41 chr12 90242215 90242312 -31015218 - MTEb LTR MaLR 0 379 287 3 1273 4440 67 0 0 chr12 90243182 90243750 -31013780 - L1_Mus1 LINE L1 0 6567 6000 3 1273 3977 93 56 3 chr12 90243750 90244357 -31013173 + L1_Mus1 LINE L1 5245 5883 0 3 1273 442 50 28 0 chr12 90244544 90244622 -31012908 + L1Md_F3 LINE L1 5939 6013 -625 3 1273 250 351 37 15 chr12 90245066 90245202 -31012328 + MIRc SINE MIR 77 215 -53 3 1273 23 33 0 0 chr12 90245504 90245534 -31011996 + AT_rich Low_complexity Low_complexity 1 30 0 3 1273 1133 175 90 5 chr12 90245544 90245756 -31011774 - MTC LTR MaLR -8 413 184 3 1273 2288 175 2 20 chr12 90245753 90246150 -31011380 + MTC LTR MaLR 32 421 0 3 1273 551 316 65 15 chr12 90246150 90246348 -31011182 - MER21B LTR ERV1 -427 436 229 3 1273 1662 204 41 27 chr12 90246348 90246686 -31010844 + ORR1D1 LTR MaLR 1 343 -31 3 1273 280 326 14 62 chr12 90246835 90246979 -31010551 - RMER12 LTR ERVK -474 848 712 3 1273 634 322 140 8 chr12 90246998 90247377 -31010153 - Lx8 LINE L1 -223 7250 6822 3 1273 1185 298 97 4 chr12 90247379 90247841 -31009689 + Lx8 LINE L1 6451 6955 -518 3 1273 347 311 45 15 chr12 90247943 90248142 -31009388 + Lx8 LINE L1 7090 7294 -179 3 1273 313 304 18 9 chr12 90248324 90248437 -31009093 - Lx8 LINE L1 -673 6800 6687 3 1273 180 97 0 0 chr12 90248536 90248567 -31008963 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1273 950 173 12 0 chr12 90248819 90248987 -31008543 - Lx9 LINE L1 -687 6957 6788 3 1273 520 196 31 143 chr12 90248998 90249284 -31008246 + Lx9 LINE L1 7389 7642 -2 3 1273 1218 54 0 0 chr12 90251280 90251427 -31006103 + B1_Mus2 SINE Alu 1 147 0 3 1273 483 160 27 45 chr12 90251547 90251658 -31005872 + RMER1A Other Other 921 1029 -1 3 1273 1079 105 0 9 chr12 90251761 90251995 -31005535 + (CA)n Simple_repeat Simple_repeat 1 231 0 3 1273 4003 78 0 0 chr12 90253112 90253622 -31003908 - L1_Mus1 LINE L1 -2 6565 6056 3 1273 650 194 33 40 chr12 90254458 90254608 -31002922 + B1_Mur3 SINE Alu 1 149 0 3 1273 351 98 0 0 chr12 90254610 90254671 -31002859 + (A)n Simple_repeat Simple_repeat 1 61 0 3 1273 1134 294 72 49 chr12 90254776 90255262 -31002268 - MLT1H LTR MaLR 0 549 53 3 1273 3909 46 11 0 chr12 90255632 90256107 -31001423 + L1Md_T LINE L1 6103 6582 0 3 1273 232 307 130 9 chr12 90256230 90256345 -31001185 - MER5B DNA MER1_type -49 129 1 3 1273 441 66 0 0 chr12 90257069 90257130 -31000400 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1273 441 0 0 0 chr12 90257130 90257178 -31000352 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1273 1118 161 93 0 chr12 90257264 90257469 -31000061 + URR1B DNA MER1_type 2 225 0 3 1273 288 0 0 0 chr12 90258275 90258307 -30999223 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1273 686 275 121 52 chr12 90258320 90258592 -30998938 - B4 SINE B4 -1 291 1 3 1273 1079 91 0 34 chr12 90258617 90258765 -30998765 - B1_Mus1 SINE Alu -5 143 1 3 1273 318 347 39 37 chr12 90259043 90259221 -30998309 - MIRb SINE MIR -87 181 2 3 1273 26 0 0 0 chr12 90259234 90259260 -30998270 + AT_rich Low_complexity Low_complexity 1 26 0 3 1273 489 308 11 27 chr12 90260020 90260207 -30997323 - MLT1F1 LTR MaLR 0 569 386 3 1273 252 0 0 0 chr12 90260549 90260577 -30996953 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3 1273 203 158 0 0 chr12 90260581 90260619 -30996911 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1273 334 331 28 14 chr12 90260625 90260766 -30996764 - B1F SINE Alu -6 143 1 4 1273 378 0 0 0 chr12 90260769 90260811 -30996719 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1273 318 281 138 16 chr12 90261205 90261393 -30996137 - L2a LINE L2 -5 3421 3211 4 1273 620 161 8 0 chr12 90261576 90261700 -30995830 + G-rich Low_complexity Low_complexity 4 128 0 4 1273 23 54 0 0 chr12 90262189 90262226 -30995304 + AT_rich Low_complexity Low_complexity 1 37 0 4 1273 219 218 0 0 chr12 90263392 90263447 -30994083 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1273 308 147 9 64 chr12 90264609 90264718 -30992812 + (TA)n Simple_repeat Simple_repeat 1 103 0 4 1273 214 337 82 0 chr12 90264828 90264926 -30992604 - MER5B DNA MER1_type -69 109 4 4 1273 345 381 7 15 chr12 90264956 90265092 -30992438 - MER5A DNA MER1_type -34 155 21 4 1273 1062 64 0 0 chr12 90265452 90265593 -30991937 + Lx3B LINE L1 5738 5878 -1095 4 1273 2139 116 9 9 chr12 90265590 90265930 -30991600 + Lx3B LINE L1 6505 6844 -129 4 1273 27 62 0 0 chr12 90265939 90265987 -30991543 + AT_rich Low_complexity Low_complexity 1 48 0 4 1273 1159 241 46 23 chr12 90266221 90266527 -30991003 + Lx5 LINE L1 6731 7043 -7 4 1273 2470 51 39 0 chr12 90266878 90267189 -30990341 - L1_Mus1 LINE L1 -1 6566 6244 4 1273 338 196 9 0 chr12 90267437 90267549 -30989981 + GA-rich Low_complexity Low_complexity 2 114 0 4 1273 1411 240 98 8 chr12 90267720 90268086 -30989444 + MTD LTR MaLR 18 416 -3 4 1273 408 20 0 0 chr12 90268258 90268332 -30989198 + L1Md_F2 LINE L1 6516 6582 0 4 1273 7333 188 22 121 chr12 90268364 90269597 -30987933 - L1VL4 LINE L1 -2505 3372 2190 4 1273 2676 102 10 2 chr12 90269597 90269990 -30987540 + L1_Mus1 LINE L1 6172 6567 0 4 1273 7333 195 30 90 chr12 90269990 90271737 -30985793 - L1VL4 LINE L1 -3688 2189 616 4 1273 744 267 167 16 chr12 90272879 90273130 -30984400 - B4 SINE B4 0 292 4 4 1273 220 338 14 14 chr12 90273468 90273537 -30983993 - ID4_ SINE ID -3 80 12 4 1273 1774 62 9 0 chr12 90273552 90273779 -30983751 + L1_Mus1 LINE L1 6339 6567 0 4 1273 279 0 0 0 chr12 90275160 90275191 -30982339 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1273 357 24 0 0 chr12 90275990 90276032 -30981498 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1273 315 0 0 0 chr12 90276032 90276067 -30981463 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1273 550 296 88 84 chr12 90276072 90276356 -30981174 - B4 SINE B4 -6 286 2 4 1273 460 370 18 6 chr12 90276437 90276600 -30980930 - B4A SINE B4 -126 166 2 4 1273 578 292 23 64 chr12 90277776 90277948 -30979582 + B3 SINE B2 47 211 -5 4 1273 24 53 0 0 chr12 90279615 90279653 -30977877 + AT_rich Low_complexity Low_complexity 1 38 0 4 1273 248 219 0 118 chr12 90279868 90279961 -30977569 - PB1D10 SINE Alu -35 82 1 4 1273 196 319 122 49 chr12 90280958 90281169 -30976361 + MIRc SINE MIR 15 237 -31 4 1273 5859 55 14 0 chr12 90281333 90282101 -30975429 - L1Md_F2 LINE L1 -108 5775 4997 4 1273 5990 73 10 3 chr12 90282101 90282884 -30974646 + L1Md_F2 LINE L1 5793 6581 -1 4 1273 810 188 43 43 chr12 90282909 90283093 -30974437 + B2_Mm2 SINE B2 2 185 -10 4 1273 28 79 0 0 chr12 90283243 90283306 -30974224 + AT_rich Low_complexity Low_complexity 1 63 0 4 1273 291 28 0 0 chr12 90284328 90284364 -30973166 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1273 203 373 119 0 chr12 90285732 90285850 -30971680 - L2 LINE L2 -507 2912 2781 4 1273 3495 160 34 5 chr12 90285989 90286603 -30970927 + Lx2B LINE L1 6369 7000 0 4 1273 416 228 9 0 chr12 90286952 90287066 -30970464 + (TCCA)n Simple_repeat Simple_repeat 4 118 0 4 1273 251 298 128 10 chr12 90287106 90287275 -30970255 + MIRc SINE MIR 3 196 -72 4 1273 597 28 0 0 chr12 90287368 90287439 -30970091 + (TTTTC)n Simple_repeat Simple_repeat 4 74 0 4 1273 813 206 0 27 chr12 90287451 90287601 -30969929 - B1_Mus1 SINE Alu -2 146 1 4 1273 483 18 0 0 chr12 90287670 90287726 -30969804 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1273 519 319 55 14 chr12 90288392 90288611 -30968919 + MIR SINE MIR 35 262 0 4 1273 533 369 118 43 chr12 90289192 90289676 -30967854 - MLT1F2 LTR MaLR 0 560 41 4 1273 209 224 30 0 chr12 90289956 90290023 -30967507 + CT-rich Low_complexity Low_complexity 3 71 0 4 1273 210 294 15 0 chr12 90290653 90290721 -30966809 - L2a LINE L2 -1 3425 3357 4 1273 619 369 58 51 chr12 90291062 90291513 -30966017 - MLT1F2 LTR MaLR 0 560 107 4 1273 365 259 6 0 chr12 90291757 90291915 -30965615 + (TA)n Simple_repeat Simple_repeat 1 159 0 4 1273 1091 294 62 70 chr12 90294062 90294417 -30963113 - ORR1E LTR MaLR -6 353 2 4 1273 319 262 85 0 chr12 90295685 90295826 -30961704 + L1MA7 LINE L1 6104 6256 -35 4 1273 658 310 142 18 chr12 90295864 90296574 -30960956 - L1MA10 LINE L1 -7 6327 5530 4 1273 270 136 0 0 chr12 90296651 90296695 -30960835 + (CCAA)n Simple_repeat Simple_repeat 1 44 0 4 1273 279 244 116 0 chr12 90296733 90296819 -30960711 - L1MA10 LINE L1 -689 5479 5384 4 1273 394 369 31 12 chr12 90296867 90297029 -30960501 - RSINE1 SINE B4 0 165 1 4 1273 275 211 64 16 chr12 90297032 90297157 -30960373 - L1MA10 LINE L1 -785 5393 5263 4 1273 547 306 0 63 chr12 90297243 90297386 -30960144 + RSINE1 SINE B4 30 163 -2 4 1273 492 278 52 17 chr12 90297742 90297973 -30959557 + Lx9 LINE L1 7399 7637 -7 4 1273 3347 27 22 7 chr12 90299285 90299693 -30957837 + L1Md_F3 LINE L1 6171 6584 0 4 1273 295 264 73 28 chr12 90299961 90300070 -30957460 - MamGypLTR1a LTR Gypsy -12 772 659 4 1273 435 38 0 0 chr12 90300678 90300731 -30956799 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1273 208 319 25 100 chr12 90300758 90300838 -30956692 + MIR SINE MIR 29 102 -160 4 1273 492 286 152 0 chr12 90301304 90301475 -30956055 - MLT1J1 LTR MaLR -245 199 3 4 1273 347 185 0 11 chr12 90301920 90302013 -30955517 + CT-rich Low_complexity Low_complexity 3 94 0 4 1273 211 253 128 75 chr12 90302080 90302174 -30955356 + MIR SINE MIR 14 112 -156 4 1273 333 0 0 0 chr12 90302532 90302569 -30954961 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1273 351 0 0 0 chr12 90302569 90302607 -30954923 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1273 330 26 0 0 chr12 90303372 90303411 -30954119 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 4 1273 228 339 0 0 chr12 90303423 90303485 -30954045 - L2a LINE L2 -20 3406 3345 4 1273 228 35 0 0 chr12 90306105 90306134 -30951396 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1273 551 230 40 7 chr12 90307333 90307482 -30950048 + MTC LTR MaLR 266 419 -2 4 1273 214 178 0 22 chr12 90307846 90307892 -30949638 + C-rich Low_complexity Low_complexity 2 46 0 4 1273 405 0 0 0 chr12 90308020 90308065 -30949465 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 159 3722 69 0 39 chr12 90308111 90308623 -30948907 + L1Md_F2 LINE L1 6079 6570 -12 4 1274 687 259 10 34 chr12 90309203 90309407 -30948123 - B3 SINE B2 -13 203 5 4 1274 180 77 0 0 chr12 90309538 90309564 -30947966 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1274 450 0 0 0 chr12 90309707 90309757 -30947773 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1274 307 330 45 45 chr12 90309789 90309900 -30947630 - MIRb SINE MIR -127 141 31 4 1274 865 236 171 27 chr12 90310218 90310510 -30947020 - ORR1D1 LTR MaLR -40 334 1 4 1274 310 331 39 24 chr12 90311074 90311201 -30946329 + MER5B DNA MER1_type 1 129 -49 4 1274 185 0 0 39 chr12 90312083 90312109 -30945421 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 4 1274 474 333 29 12 chr12 90312224 90312397 -30945133 + Lx8 LINE L1 7154 7329 -144 4 1274 23 33 0 0 chr12 90312418 90312448 -30945082 + AT_rich Low_complexity Low_complexity 1 30 0 4 1274 295 330 53 88 chr12 90312605 90312718 -30944812 + RSINE1 SINE B4 55 163 -2 4 1274 636 152 0 0 chr12 90312725 90312843 -30944687 + (CA)n Simple_repeat Simple_repeat 1 118 0 4 1274 310 270 69 20 chr12 90313975 90314077 -30943453 - MIRb SINE MIR -2 266 160 4 1274 524 285 34 130 chr12 90314418 90314741 -30942789 - B4 SINE B4 0 292 1 4 1274 657 164 0 33 chr12 90314812 90314932 -30942598 - B1_Mm SINE Alu 0 147 32 4 1274 243 85 68 0 chr12 90315201 90315260 -30942270 + T-rich Low_complexity Low_complexity 2 64 0 4 1274 346 312 14 14 chr12 90315742 90315882 -30941648 - MER96B DNA hAT -235 182 43 4 1274 413 279 18 18 chr12 90315948 90316061 -30941469 - MTEb LTR MaLR -10 369 257 4 1274 364 258 0 11 chr12 90316193 90316287 -30941243 - MTEb LTR MaLR -239 120 28 4 1274 674 328 72 18 chr12 90316848 90317180 -30940350 - Lx8 LINE L1 0 7473 7124 4 1274 625 180 250 23 chr12 90318218 90318394 -30939136 - B3 SINE B2 0 216 1 4 1274 1305 186 0 17 chr12 90318896 90319126 -30938404 + URR1A DNA MER1_type 1 226 0 4 1274 250 217 34 34 chr12 90319971 90320119 -30937411 + CT-rich Low_complexity Low_complexity 5 152 0 4 1274 302 369 74 31 chr12 90320744 90320973 -30936557 + MIRb SINE MIR 13 251 -17 4 1274 272 315 81 40 chr12 90321059 90321208 -30936322 + MIRb SINE MIR 59 213 -55 4 1274 25 0 0 0 chr12 90321360 90321385 -30936145 + AT_rich Low_complexity Low_complexity 1 25 0 4 1274 1115 75 0 33 chr12 90321388 90321539 -30935991 - B1_Mus1 SINE Alu -1 147 2 4 1274 225 345 44 0 chr12 90322526 90322639 -30934891 + Charlie4z DNA MER1_type 11 128 -39 4 1274 500 339 8 0 chr12 90323104 90323222 -30934308 + RSINE1 SINE B4 39 157 -8 4 1274 32 26 0 0 chr12 90323232 90323271 -30934259 + AT_rich Low_complexity Low_complexity 1 39 0 4 1274 271 300 17 0 chr12 90323299 90323359 -30934171 - PB1D7 SINE Alu -9 111 51 4 1274 1668 21 0 0 chr12 90323778 90323968 -30933562 - B2_Mm1t SINE B2 -2 191 2 4 1274 321 203 34 40 chr12 90324446 90324595 -30932935 + (TA)n Simple_repeat Simple_repeat 1 148 0 5 1274 227 332 39 26 chr12 90325218 90325447 -30932083 - L1M5 LINE L1 -598 5526 5295 5 1274 285 326 18 50 chr12 90325755 90325969 -30931561 - MIR SINE MIR -8 260 47 5 1274 26 50 0 0 chr12 90326643 90326683 -30930847 + AT_rich Low_complexity Low_complexity 1 40 0 5 1274 552 284 109 16 chr12 90326683 90326930 -30930600 - Lx8 LINE L1 -5 7468 7199 5 1274 428 177 51 0 chr12 90326954 90327033 -30930497 - Lx8 LINE L1 -353 7120 7038 5 1274 1518 290 112 27 chr12 90327047 90327791 -30929739 - Lx8 LINE L1 -469 7004 6198 5 1274 234 0 0 0 chr12 90327872 90327898 -30929632 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1274 209 331 131 29 chr12 90327965 90328102 -30929428 + L2c LINE L2 3008 3158 -229 5 1274 381 22 0 0 chr12 90328689 90328735 -30928795 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1274 3226 49 0 36 chr12 90329621 90330042 -30927488 + L1_Mus1 LINE L1 6162 6567 0 5 1274 228 267 9 47 chr12 90330155 90330261 -30927269 + CT-rich Low_complexity Low_complexity 3 104 0 5 1274 279 300 23 29 chr12 90330285 90330460 -30927070 + CT-rich Low_complexity Low_complexity 3 176 0 5 1274 534 291 191 28 chr12 90330870 90331116 -30926414 + B4 SINE B4 1 286 -6 5 1274 252 122 0 0 chr12 90331140 90331181 -30926349 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1274 198 0 0 0 chr12 90332912 90332934 -30924596 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1274 360 0 0 0 chr12 90332936 90332976 -30924554 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1274 588 298 127 0 chr12 90332977 90333135 -30924395 - B4 SINE B4 -39 253 76 5 1274 180 302 16 16 chr12 90334068 90334132 -30923398 + MIRc SINE MIR 84 147 -121 5 1274 234 325 183 22 chr12 90334300 90334474 -30923056 + L4 LINE RTE 1193 1394 -635 5 1274 409 267 188 6 chr12 90334511 90334692 -30922838 - MIR SINE MIR -22 240 27 5 1274 496 300 32 41 chr12 90336089 90336308 -30921222 - L1M5 LINE L1 -531 5663 5447 5 1274 260 258 162 20 chr12 90337521 90337620 -30919910 - MLT1I LTR MaLR 0 411 299 5 1274 303 322 106 25 chr12 90338121 90338357 -30919173 - L3 LINE CR1 -393 4096 3842 5 1274 266 312 21 31 chr12 90338419 90338515 -30919015 + MLT1G1 LTR MaLR 1 95 -484 5 1274 668 98 10 0 chr12 90338548 90338650 -30918880 + (TC)n Simple_repeat Simple_repeat 2 104 0 5 1274 222 37 0 0 chr12 90339286 90339313 -30918217 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1274 273 297 11 11 chr12 90339340 90339432 -30918098 - Lx8 LINE L1 -198 7275 7184 5 1274 284 0 28 0 chr12 90339433 90339469 -30918061 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1274 1257 68 0 0 chr12 90339474 90339621 -30917909 - B1_Mus2 SINE Alu 0 147 1 5 1274 830 348 60 54 chr12 90339843 90340308 -30917222 - MLT1I-int LTR MaLR -930 479 12 5 1274 213 65 0 0 chr12 90340328 90340359 -30917171 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1274 1758 284 46 12 chr12 90340359 90341039 -30916491 - L1M2 LINE L1 -1140 5003 4301 5 1274 784 304 30 47 chr12 90341636 90341933 -30915597 + B4 SINE B4 1 292 0 5 1274 211 318 0 12 chr12 90341950 90342036 -30915494 + (CATA)n Simple_repeat Simple_repeat 4 88 0 5 1274 289 265 44 0 chr12 90344017 90344085 -30913445 + MIR SINE MIR 110 180 -82 5 1274 272 348 0 0 chr12 90346622 90346711 -30910819 + MLT1A0 LTR MaLR 166 254 -111 5 1274 264 120 0 0 chr12 90347112 90347162 -30910368 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1274 548 325 42 18 chr12 90347184 90347350 -30910180 - ID_B1 SINE B4 -9 215 46 5 1274 284 270 13 13 chr12 90349059 90349134 -30908396 + ID SINE ID 2 76 -148 5 1274 1064 89 7 0 chr12 90349648 90349783 -30907747 + B1_Mus1 SINE Alu 2 137 -11 5 1274 243 0 0 0 chr12 90349783 90349810 -30907720 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1274 21 0 0 0 chr12 90350396 90350417 -30907113 + AT_rich Low_complexity Low_complexity 1 21 0 5 1274 235 309 126 31 chr12 90351846 90351973 -30905557 - MLT1H LTR MaLR -379 170 32 5 1274 777 51 0 0 chr12 90352632 90352730 -30904800 + (GAA)n Simple_repeat Simple_repeat 2 99 0 5 1274 576 346 0 57 chr12 90353006 90353199 -30904331 + B3A SINE B2 1 182 -16 5 1274 1067 254 126 31 chr12 90353215 90353605 -30903925 - BGLII_B LTR ERVK -10 431 5 5 1274 23 0 0 0 chr12 90353667 90353690 -30903840 + AT_rich Low_complexity Low_complexity 1 23 0 5 1274 377 302 23 70 chr12 90354692 90354863 -30902667 + MIR SINE MIR 100 262 0 5 1274 916 66 42 12 chr12 90355232 90355400 -30902130 + (TCTCCC)n Simple_repeat Simple_repeat 2 174 0 5 1274 691 335 21 48 chr12 90356094 90356383 -30901147 - MLT1A0 LTR MaLR -20 345 65 5 1274 228 247 70 58 chr12 90358094 90358180 -30899350 - Charlie8 DNA MER1_type -2140 288 202 5 1274 195 342 189 0 chr12 90358978 90359089 -30898441 + MIRc SINE MIR 75 206 -62 5 1274 316 292 173 9 chr12 90359637 90359851 -30897679 - L2 LINE L2 -927 2492 2244 5 1274 341 294 86 18 chr12 90359924 90360087 -30897443 + MER58A DNA MER1_type 50 223 -1 5 1274 238 250 0 16 chr12 90360117 90360230 -30897300 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1274 194 256 0 23 chr12 90360230 90360274 -30897256 + L2b LINE L2 3317 3359 -16 5 1274 26 0 0 0 chr12 90360683 90360709 -30896821 + AT_rich Low_complexity Low_complexity 1 26 0 5 1274 216 304 62 53 chr12 90361091 90361234 -30896296 + MIRb SINE MIR 55 200 -68 5 1274 2366 311 56 29 chr12 90361682 90362536 -30894994 - Lx8 LINE L1 -2 7471 6595 5 1274 259 333 58 22 chr12 90362673 90362811 -30894719 + MIRc SINE MIR 21 163 -105 5 1274 788 205 0 19 chr12 90363765 90363919 -30893611 + MTC LTR MaLR 271 421 0 5 1274 2086 302 123 41 chr12 90364037 90364703 -30892827 - Lx9 LINE L1 -22 7622 6926 5 1274 844 168 69 0 chr12 90364703 90364834 -30892696 + B1_Mur4 SINE Alu 5 144 -6 5 1274 2086 302 123 41 chr12 90364834 90365153 -30892377 - Lx9 LINE L1 -719 6925 6556 5 1274 1136 179 114 0 chr12 90365698 90365899 -30891631 - URR1A DNA MER1_type -1 225 2 5 1274 189 74 0 0 chr12 90366886 90366913 -30890617 + (TTTTTG)n Simple_repeat Simple_repeat 5 31 0 5 1274 521 298 0 16 chr12 90369286 90369409 -30888121 + ID_B1 SINE B4 104 224 0 5 1274 22 0 0 0 chr12 90369412 90369434 -30888096 + AT_rich Low_complexity Low_complexity 1 22 0 5 1274 581 218 0 0 chr12 90371021 90371122 -30886408 + URR1B DNA MER1_type 5 105 -120 5 1274 1158 185 5 5 chr12 90371113 90371314 -30886216 + URR1B DNA MER1_type 22 222 -3 5 1274 221 307 0 39 chr12 90371332 90371410 -30886120 + CT-rich Low_complexity Low_complexity 3 77 0 5 1274 225 0 0 0 chr12 90372054 90372079 -30885451 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1274 1218 75 0 0 chr12 90372426 90372573 -30884957 + B1_Mus2 SINE Alu 1 147 0 5 1274 271 302 0 0 chr12 90373062 90373158 -30884372 + C-rich Low_complexity Low_complexity 1 96 0 5 1274 184 156 31 0 chr12 90374184 90374216 -30883314 + MIR3 SINE MIR 125 157 -51 5 1274 9579 95 16 21 chr12 90375441 90375459 -30882071 - Lx3A LINE L1 -4 6977 6967 5 1274 195 42 0 0 chr12 90375459 90375483 -30882047 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5 1274 9579 85 14 11 chr12 90375483 90377621 -30879909 - Lx3A LINE L1 -15 6966 4824 5 1274 209 83 0 27 chr12 90378849 90378864 -30878666 + (CAT)n Simple_repeat Simple_repeat 1 15 0 5 1274 750 11 0 0 chr12 90378864 90378951 -30878579 + (TTC)n Simple_repeat Simple_repeat 2 88 0 5 1274 209 83 0 27 chr12 90378951 90378972 -30878558 + (CAT)n Simple_repeat Simple_repeat 1 21 0 5 1274 249 33 0 0 chr12 90378972 90379002 -30878528 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5 1274 190 109 43 21 chr12 90380101 90380148 -30877382 + T-rich Low_complexity Low_complexity 2 49 0 5 1274 22 0 0 0 chr12 90381702 90381724 -30875806 + AT_rich Low_complexity Low_complexity 1 22 0 5 1274 910 302 48 45 chr12 90382534 90382825 -30874705 - B4 SINE B4 0 292 1 5 1274 8941 34 1 0 chr12 90385124 90386118 -30871412 + L1Md_T LINE L1 5587 6581 -1 5 1274 638 245 153 39 chr12 90386773 90387002 -30870528 - Lx2B LINE L1 -7 6993 6739 5 1274 324 395 38 30 chr12 90388030 90388265 -30869265 - MIRc SINE MIR -19 249 13 5 1274 463 97 36 36 chr12 90389400 90389539 -30867991 + T-rich Low_complexity Low_complexity 6 144 0 5 1274 781 323 29 35 chr12 90389550 90389864 -30867666 - Lx8 LINE L1 -156 7317 7006 5 1274 1314 296 8 46 chr12 90389930 90390408 -30867122 - Lx8 LINE L1 -643 6830 6371 5 1274 31 44 0 0 chr12 90390960 90391005 -30866525 + AT_rich Low_complexity Low_complexity 1 45 0 5 1274 924 144 14 7 chr12 90391425 90391572 -30865958 - B1_Mur3 SINE Alu 0 149 2 5 1274 605 266 52 14 chr12 90391606 90391788 -30865742 - B3 SINE B2 -15 183 3 5 1274 535 124 10 15 chr12 90391952 90392056 -30865474 - L1_Mus2 LINE L1 -164 6474 6329 5 1274 1234 76 6 0 chr12 90392056 90392227 -30865303 + L1_Mus2 LINE L1 6395 6566 0 5 1274 411 21 0 0 chr12 90392339 90392387 -30865143 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1274 539 336 51 11 chr12 90392397 90392463 -30865067 - B4 SINE B4 -4 288 224 5 1274 369 0 0 0 chr12 90392463 90392504 -30865026 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 5 1274 539 336 51 11 chr12 90392504 90392711 -30864819 - B4 SINE B4 -69 223 6 5 1274 265 369 45 32 chr12 90392715 90392869 -30864661 + Charlie10 DNA MER1_type 102 257 -2565 5 1274 436 364 45 38 chr12 90393843 90394134 -30863396 + L2b LINE L2 2599 2891 -528 5 1274 1053 135 120 0 chr12 90394166 90394366 -30863164 + URR1A DNA MER1_type 1 224 -2 5 1274 259 374 77 30 chr12 90394504 90394802 -30862728 + L2b LINE L2 3114 3425 -1 5 1274 7210 65 18 1 chr12 90395784 90397220 -30860310 - L1Md_F2 LINE L1 -15 6567 5108 5 1274 938 62 0 0 chr12 90397221 90397349 -30860181 + L1Md_F2 LINE L1 4991 5118 -765 5 1274 210 237 85 0 chr12 90397362 90397421 -30860109 + MIR SINE MIR 83 146 -62 5 1274 253 171 57 0 chr12 90397525 90397595 -30859935 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 5 1274 729 319 42 93 chr12 90398785 90398936 -30858594 + MLT1A LTR MaLR 36 186 -188 5 1274 1080 84 0 0 chr12 90398936 90399078 -30858452 - B1_Mus2 SINE Alu -1 146 5 5 1274 729 319 42 93 chr12 90399078 90399282 -30858248 + MLT1A LTR MaLR 187 373 -1 5 1274 205 376 39 56 chr12 90399867 90400047 -30857483 - MIR SINE MIR -2 260 84 6 1274 1015 215 9 53 chr12 90401362 90401588 -30855942 - B3 SINE B2 0 216 1 6 1274 5780 81 49 1 chr12 90402145 90402962 -30854568 - L1_Mus3 LINE L1 -4 6634 5779 6 1274 779 105 0 8 chr12 90403139 90403264 -30854266 + (GGAA)n Simple_repeat Simple_repeat 3 126 0 6 1274 224 139 23 0 chr12 90403541 90403584 -30853946 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1274 186 337 170 52 chr12 90404355 90404549 -30852981 + MIRc SINE MIR 2 218 -50 6 1274 891 75 0 0 chr12 90404891 90405011 -30852519 + (GGAAA)n Simple_repeat Simple_repeat 5 124 0 6 1274 1239 114 0 3 chr12 90405596 90405959 -30851571 + (TCC)n Simple_repeat Simple_repeat 1 361 0 6 1274 459 113 0 0 chr12 90405961 90406032 -30851498 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1274 243 243 69 28 chr12 90408218 90408290 -30849240 + Tigger14a DNA MER2_type 73 147 -177 6 1274 890 149 31 12 chr12 90408522 90408685 -30848845 + URR1A DNA MER1_type 59 224 -2 6 1274 226 368 0 0 chr12 90408785 90408853 -30848677 + MER81 DNA AcHobo 38 105 -9 6 1274 698 265 122 0 chr12 90409279 90409468 -30848062 + B3 SINE B2 1 212 -4 6 1274 664 117 8 24 chr12 90409485 90409608 -30847922 + (GA)n Simple_repeat Simple_repeat 1 121 0 6 1274 899 299 12 51 chr12 90409618 90409875 -30847655 + B4 SINE B4 3 249 -43 6 1274 327 25 0 0 chr12 90409887 90409927 -30847603 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1274 231 368 23 0 chr12 90409980 90410067 -30847463 + L2a LINE L2 3329 3417 -9 6 1274 744 240 74 30 chr12 90410135 90410337 -30847193 - B3 SINE B2 -5 211 1 6 1274 368 247 21 11 chr12 90410859 90410953 -30846577 + PB1D9 SINE Alu 26 120 0 6 1274 227 412 9 9 chr12 90411580 90411695 -30845835 + ID_B1 SINE B4 4 118 -106 6 1274 547 270 71 0 chr12 90411696 90411822 -30845708 + B4 SINE B4 150 284 -8 6 1274 514 140 10 10 chr12 90411847 90411948 -30845582 + GA-rich Low_complexity Low_complexity 6 106 0 6 1274 335 371 79 14 chr12 90412004 90412221 -30845309 + MIRb SINE MIR 1 228 -40 6 1274 1959 145 70 15 chr12 90414323 90414666 -30842864 - ORR1B2 LTR MaLR -3 364 3 6 1274 210 37 0 0 chr12 90415082 90415109 -30842421 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1274 505 218 6 23 chr12 90415109 90415283 -30842247 + (TA)n Simple_repeat Simple_repeat 1 171 0 6 1274 669 313 35 15 chr12 90415299 90415497 -30842033 - B4A SINE B4 0 292 91 6 1274 2273 148 70 20 chr12 90416334 90416733 -30840797 - MTC LTR MaLR -2 419 1 6 1274 366 305 167 26 chr12 90417753 90418049 -30839481 - ORR1D1 LTR MaLR -1 369 25 6 1274 1729 55 5 0 chr12 90420219 90420436 -30837094 + L1_Mus1 LINE L1 6350 6567 0 6 1274 362 307 26 29 chr12 90420939 90421076 -30836454 + ID_B1 SINE B4 79 218 -74 6 1274 278 302 120 30 chr12 90420953 90421086 -30836444 + B1F1 SINE Alu 5 149 0 6 1274 567 0 0 0 chr12 90421125 90421188 -30836342 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 6 1274 466 246 6 11 chr12 90423471 90423481 -30834049 + (CATA)n Simple_repeat Simple_repeat 1 10 0 6 1274 243 0 0 0 chr12 90423481 90423508 -30834022 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1274 466 246 6 11 chr12 90423508 90423678 -30833852 + (CATA)n Simple_repeat Simple_repeat 3 171 0 6 1274 498 75 0 0 chr12 90423709 90423776 -30833754 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1274 419 362 52 40 chr12 90424355 90424605 -30832925 - MER115 DNA Tip100 -94 599 347 6 1274 192 152 0 0 chr12 90427644 90427677 -30829853 + MIRc SINE MIR 85 117 -151 6 1274 492 18 0 0 chr12 90428464 90428521 -30829009 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1274 200 203 0 72 chr12 90430015 90430084 -30827446 + CT-rich Low_complexity Low_complexity 3 66 0 6 1274 327 146 0 0 chr12 90430398 90430453 -30827077 + (T)n Simple_repeat Simple_repeat 1 55 0 6 1274 192 200 0 0 chr12 90430994 90431039 -30826491 + A-rich Low_complexity Low_complexity 1 45 0 6 1274 489 120 0 0 chr12 90431698 90431790 -30825740 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 1274 189 219 0 0 chr12 90432709 90432750 -30824780 + L2b LINE L2 3330 3370 -5 6 1274 214 339 113 64 chr12 90432794 90433059 -30824471 - L2c LINE L2 -67 3320 3043 6 1274 435 294 42 46 chr12 90433264 90433548 -30823982 - RLTR15 LTR ERVK -65 294 45 6 1274 1065 196 55 10 chr12 90434721 90434922 -30822608 + B3 SINE B2 1 210 -6 6 1274 641 302 42 16 chr12 90435502 90435694 -30821836 - ID_B1 SINE B4 -19 205 9 6 1274 215 0 67 0 chr12 90435851 90435881 -30821649 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1274 23 0 0 0 chr12 90435909 90435932 -30821598 + AT_rich Low_complexity Low_complexity 1 23 0 6 1274 303 366 48 27 chr12 90435946 90436092 -30821438 - MLT1A LTR MaLR -75 299 151 6 1274 577 310 25 5 chr12 90436175 90436373 -30821157 + Lx8 LINE L1 7167 7368 -105 6 1274 313 333 165 20 chr12 90436517 90436814 -30820716 - L2c LINE L2 -22 3365 3026 6 1274 282 250 0 45 chr12 90438426 90438493 -30819037 - B1_Mur2 SINE Alu -7 142 79 6 1274 26 50 0 0 chr12 90439051 90439091 -30818439 + AT_rich Low_complexity Low_complexity 1 40 0 6 1274 318 330 53 18 chr12 90439108 90439222 -30818308 - B1F SINE Alu -31 118 1 6 1275 894 39 8 16 chr12 90440159 90440288 -30817242 + (TA)n Simple_repeat Simple_repeat 1 128 0 6 1275 1113 99 0 0 chr12 90440289 90440431 -30817099 - B1_Mus1 SINE Alu -6 142 1 6 1275 492 132 0 0 chr12 90440502 90440585 -30816945 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 1275 288 209 0 30 chr12 90442800 90442879 -30814651 - L1M1 LINE L1 -565 5726 5650 6 1275 25 31 0 0 chr12 90442905 90442937 -30814593 + AT_rich Low_complexity Low_complexity 1 32 0 6 1275 702 258 90 10 chr12 90443287 90443487 -30814043 + B3 SINE B2 1 216 0 6 1275 210 200 20 0 chr12 90444091 90444141 -30813389 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1275 432 188 52 39 chr12 90444163 90444318 -30813212 + Lx9 LINE L1 7486 7642 -2 6 1275 405 0 0 0 chr12 90444423 90444468 -30813062 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1275 24 77 0 0 chr12 90444870 90444922 -30812608 + AT_rich Low_complexity Low_complexity 1 52 0 6 1275 442 346 13 92 chr12 90445313 90445542 -30811988 + MER20 DNA MER1_type 4 214 -5 6 1275 377 282 63 16 chr12 90445556 90445682 -30811848 - MER58A DNA MER1_type -34 190 59 6 1275 1788 189 39 28 chr12 90445778 90446137 -30811393 - ORR1B2 LTR MaLR -4 363 1 6 1275 1167 292 45 64 chr12 90446626 90447094 -30810436 + Lx8 LINE L1 7010 7468 -5 6 1275 675 91 0 20 chr12 90448302 90448403 -30809127 - L1_Mm LINE L1 -1368 4515 4417 6 1275 591 15 0 0 chr12 90448446 90448514 -30809016 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 6 1275 287 307 117 34 chr12 90449221 90449429 -30808101 - MLT1A LTR MaLR -16 374 131 6 1275 448 255 30 10 chr12 90449514 90449613 -30807917 + B4 SINE B4 1 101 -191 6 1275 307 255 40 69 chr12 90450009 90450110 -30807420 + B4 SINE B4 116 213 -79 6 1275 1123 211 251 18 chr12 90451546 90451889 -30805641 - Lx9 LINE L1 -457 7187 6765 6 1275 1016 247 154 8 chr12 90451877 90452160 -30805370 + Lx9 LINE L1 7198 7518 -126 6 1275 2158 172 37 5 chr12 90452160 90452568 -30804962 + MTC LTR MaLR 1 421 0 6 1275 1016 247 154 8 chr12 90452568 90452668 -30804862 + Lx9 LINE L1 7519 7636 -8 6 1275 358 330 61 34 chr12 90453310 90453571 -30803959 - L1M5 LINE L1 -606 5753 5481 6 1275 1051 55 0 7 chr12 90454401 90454548 -30802982 - L1Md_F2 LINE L1 0 6582 6437 6 1275 931 62 141 0 chr12 90454589 90454717 -30802813 - B1_Mus1 SINE Alu -1 147 2 6 1275 372 352 102 28 chr12 90455915 90456745 -30800785 + L1MEg LINE L1 224 1115 -4969 6 1275 567 278 28 23 chr12 90456767 90456981 -30800549 + B3 SINE B2 1 215 -1 6 1275 292 305 0 79 chr12 90457056 90457068 -30800462 + MT2B LTR ERVL 154 156 -445 6 1275 606 211 18 0 chr12 90457068 90457182 -30800348 + B1_Mus1 SINE Alu 1 116 -32 6 1275 545 0 0 15 chr12 90457187 90457253 -30800277 + (CAAAA)n Simple_repeat Simple_repeat 3 67 0 6 1275 321 24 0 0 chr12 90457471 90457549 -30799981 - L1Md_F3 LINE L1 0 6584 6522 6 1275 2266 29 11 4 chr12 90457550 90457824 -30799706 + L1Md_F3 LINE L1 6232 6507 -77 6 1275 258 314 0 54 chr12 90457955 90458029 -30799501 + ID4 SINE ID 3 72 -11 6 1275 1116 88 0 0 chr12 90458030 90458177 -30799353 - B1_Mus2 SINE Alu 0 147 1 6 1275 1166 68 0 0 chr12 90458751 90458899 -30798631 - B1_Mus1 SINE Alu 0 148 1 6 1275 23 0 0 0 chr12 90459733 90459756 -30797774 + AT_rich Low_complexity Low_complexity 1 23 0 6 1275 489 299 54 0 chr12 90460021 90460168 -30797362 + Lx8 LINE L1 6878 7032 -441 6 1275 187 31 30 30 chr12 90460168 90460201 -30797329 + (GAGAA)n Simple_repeat Simple_repeat 5 37 0 6 1275 314 350 90 7 chr12 90460209 90460353 -30797177 + HAL1-3A_ME LINE L1 2284 2439 -419 6 1275 318 308 57 132 chr12 90460366 90460684 -30796846 + Lx9 LINE L1 7124 7417 -227 6 1275 231 257 109 9 chr12 90460734 90460844 -30796686 + Lx8 LINE L1 7348 7468 -5 6 1275 304 0 0 0 chr12 90461087 90461126 -30796404 + L1Md_F2 LINE L1 6530 6568 -14 6 1275 573 15 0 0 chr12 90461130 90461196 -30796334 + (GAA)n Simple_repeat Simple_repeat 3 68 0 6 1275 29 94 0 0 chr12 90461252 90461337 -30796193 + AT_rich Low_complexity Low_complexity 1 85 0 6 1275 506 309 57 52 chr12 90461432 90461856 -30795674 + L1ME3A LINE L1 5403 5828 -345 6 1275 1015 230 94 104 chr12 90462454 90462837 -30794693 + MTE2a LTR MaLR 1 379 0 6 1275 1212 299 91 70 chr12 90462837 90463858 -30793672 + MTE2a-int LTR MaLR 1 1383 -197 6 1275 26 30 0 0 chr12 90463870 90463903 -30793627 + AT_rich Low_complexity Low_complexity 1 33 0 6 1275 189 107 0 0 chr12 90463913 90463941 -30793589 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1275 409 148 158 0 chr12 90464109 90464210 -30793320 - Lx LINE L1 0 6654 6538 7 1275 351 0 0 0 chr12 90464210 90464249 -30793281 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1275 470 272 57 7 chr12 90464314 90464455 -30793075 + MTE2a-int LTR MaLR 1445 1580 0 6 1275 757 307 23 119 chr12 90464455 90464799 -30792731 + MTE2a LTR MaLR 1 311 -68 6 1275 369 361 73 36 chr12 90465214 90465461 -30792069 - LTR86A1 LTR ERVL -245 268 13 7 1275 200 359 25 37 chr12 90466377 90466458 -30791072 - MIR SINE MIR -170 92 13 7 1275 635 300 31 21 chr12 90466600 90466886 -30790644 + MER33 DNA MER1_type 5 293 -31 7 1275 21 0 0 0 chr12 90467523 90467544 -30789986 + AT_rich Low_complexity Low_complexity 1 21 0 7 1275 298 282 12 12 chr12 90467621 90467707 -30789823 - Lx9 LINE L1 -233 7411 7326 7 1275 1797 78 0 4 chr12 90467892 90468125 -30789405 + L1_Mus1 LINE L1 6001 6232 -335 7 1275 232 342 51 70 chr12 90468500 90468714 -30788816 + L2a LINE L2 2683 2892 -527 7 1275 234 304 58 0 chr12 90469066 90469135 -30788395 + L2a LINE L2 3352 3424 -2 7 1275 270 0 0 0 chr12 90469532 90469562 -30787968 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1275 315 0 0 0 chr12 90470041 90470076 -30787454 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1275 197 333 79 33 chr12 90470259 90470411 -30787119 - L2 LINE L2 -703 2716 2558 7 1275 535 309 55 40 chr12 90470420 90470619 -30786911 - MLT1I LTR MaLR -15 396 195 7 1275 723 254 40 35 chr12 90470644 90470844 -30786686 - B3 SINE B2 -14 202 2 7 1275 347 283 0 20 chr12 90471519 90471620 -30785910 - PB1D10 SINE Alu -2 115 17 7 1275 385 259 0 0 chr12 90472455 90472540 -30784990 + PB1D10 SINE Alu 19 103 -14 7 1275 279 0 0 0 chr12 90472696 90472727 -30784803 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 7 1275 396 317 29 0 chr12 90472743 90472847 -30784683 - RSINE1 SINE B4 -36 129 23 7 1275 242 147 25 51 chr12 90473207 90473286 -30784244 + CT-rich Low_complexity Low_complexity 1 77 0 7 1275 279 0 0 0 chr12 90473311 90473342 -30784188 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1275 252 0 0 0 chr12 90473662 90473690 -30783840 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1275 197 296 19 0 chr12 90476089 90476143 -30781387 + L2 LINE L2 2596 2650 -769 7 1275 420 324 84 47 chr12 90477760 90478039 -30779491 - MLT1D LTR MaLR 0 505 188 7 1275 239 309 39 58 chr12 90478090 90478193 -30779337 - MLT1D LTR MaLR -398 107 7 7 1275 252 77 0 0 chr12 90478234 90478273 -30779257 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1275 202 367 41 24 chr12 90479035 90479158 -30778372 + MIR SINE MIR 29 153 -109 7 1275 200 308 45 27 chr12 90479191 90479301 -30778229 - MIRb SINE MIR -70 198 87 7 1275 232 300 33 0 chr12 90479719 90479779 -30777751 - MER117 DNA MER1_type -134 63 2 7 1275 200 167 0 20 chr12 90480345 90480394 -30777136 + CT-rich Low_complexity Low_complexity 2 49 0 7 1275 299 286 10 0 chr12 90480396 90480494 -30777036 + Lx7 LINE L1 7585 7683 -13 7 1275 25 0 0 0 chr12 90480494 90480519 -30777011 + AT_rich Low_complexity Low_complexity 1 25 0 7 1275 275 177 0 16 chr12 90483399 90483462 -30774068 + CT-rich Low_complexity Low_complexity 1 62 0 7 1275 9858 6 0 0 chr12 90484705 90485814 -30771716 + L1Md_A LINE L1 4478 5586 -297 7 1275 9046 1 0 0 chr12 90485814 90486810 -30770720 + L1Md_A LINE L1 5587 6582 0 7 1275 312 83 0 0 chr12 90487140 90487188 -30770342 + (TATG)n Simple_repeat Simple_repeat 2 49 0 7 1275 317 321 93 21 chr12 90488342 90488560 -30768970 + MIR SINE MIR 36 261 -1 7 1275 23 33 0 0 chr12 90488633 90488663 -30768867 + AT_rich Low_complexity Low_complexity 1 30 0 7 1275 22 0 0 0 chr12 90488835 90488857 -30768673 + AT_rich Low_complexity Low_complexity 1 22 0 7 1275 513 339 93 50 chr12 90491261 90491559 -30765971 + B4 SINE B4 1 277 -15 7 1275 461 396 59 26 chr12 90492114 90492386 -30765144 - B4 SINE B4 -11 281 1 7 1275 228 135 0 0 chr12 90494244 90494281 -30763249 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1275 1118 230 78 97 chr12 90495575 90495936 -30761594 - ORR1E LTR MaLR -5 354 1 7 1275 918 276 61 46 chr12 90496052 90496379 -30761151 - Lx8 LINE L1 -2 7471 7140 7 1275 225 164 13 52 chr12 90496527 90496604 -30760926 + (TAAA)n Simple_repeat Simple_repeat 3 76 0 7 1275 474 65 0 0 chr12 90497277 90497339 -30760191 + (TAA)n Simple_repeat Simple_repeat 3 64 0 7 1275 194 282 77 0 chr12 90497445 90497523 -30760007 + L2a LINE L2 2998 3081 -345 7 1275 680 228 0 14 chr12 90497823 90497970 -30759560 + B1F2 SINE Alu 3 147 -2 7 1275 339 299 167 20 chr12 90498144 90498294 -30759236 - MIR SINE MIR -41 221 50 7 1275 260 350 104 30 chr12 90499403 90499633 -30757897 + MIR SINE MIR 14 260 -2 7 1275 405 0 0 0 chr12 90500017 90500062 -30757468 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1275 444 240 110 52 chr12 90502851 90503005 -30754525 - RSINE1 SINE B4 -1 164 2 2 1275 304 309 87 14 chr12 90503306 90503462 -30754068 + MIRb SINE MIR 2 166 -102 3 1275 983 171 44 0 chr12 90504389 90504570 -30752960 + URR1A DNA MER1_type 38 226 0 4 1275 5897 37 0 4 chr12 90504722 90505425 -30752105 - L1Md_F2 LINE L1 0 6582 5883 5 1275 243 289 11 11 chr12 90505512 90505603 -30751927 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1275 261 265 15 0 chr12 90505532 90505600 -30751930 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 7 1275 522 83 0 0 chr12 90506844 90506916 -30750614 + (TA)n Simple_repeat Simple_repeat 2 73 0 8 1275 240 165 22 11 chr12 90506927 90507019 -30750511 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 9 1275 2757 178 54 74 chr12 90507099 90507670 -30749860 - RLTR20B2 LTR ERVK 0 560 1 1 1275 318 310 18 9 chr12 90508213 90508327 -30749203 + MIR3 SINE MIR 87 201 -7 1 1275 229 352 9 37 chr12 90509425 90509534 -30747996 - MIRb SINE MIR -42 226 121 1 1275 531 0 0 0 chr12 90509658 90509717 -30747813 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1275 1956 188 38 6 chr12 90512074 90512416 -30745114 + MTC LTR MaLR 1 353 -68 1 1275 305 336 23 85 chr12 90512995 90513125 -30744405 + PB1 SINE Alu 6 127 0 1 1275 258 310 67 98 chr12 90513757 90513950 -30743580 - MIR3 SINE MIR -6 202 16 1 1275 304 248 168 0 chr12 90514459 90514560 -30742970 + MIRb SINE MIR 112 229 -39 1 1275 195 100 0 0 chr12 90514723 90514753 -30742777 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1275 2855 222 189 18 chr12 90514841 90515852 -30741678 - RMER1A Other Other -97 933 1 1 1275 430 309 55 12 chr12 90515856 90516020 -30741510 - RMER1A Other Other -788 242 72 2 1275 276 30 0 0 chr12 90519706 90519739 -30737791 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1275 535 42 42 10 chr12 90519739 90519834 -30737696 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1275 271 284 98 0 chr12 90520265 90520367 -30737163 - L2a LINE L2 -91 3335 3224 2 1275 546 163 0 0 chr12 90524260 90524358 -30733172 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 1275 184 314 62 41 chr12 90526928 90527074 -30730456 + L2 LINE L2 2279 2427 -992 2 1275 1074 314 70 51 chr12 90528226 90528830 -30728700 - MamRep605 Unknown Unknown -188 688 74 2 1275 270 0 0 0 chr12 90529004 90529034 -30728496 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1275 459 0 0 0 chr12 90529574 90529625 -30727905 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1275 213 274 123 0 chr12 90530501 90530574 -30726956 + MIRb SINE MIR 112 193 -75 2 1275 270 0 0 0 chr12 90530579 90530609 -30726921 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1275 1203 232 111 29 chr12 90533589 90533939 -30723591 - ORR1C2 LTR MaLR 0 384 6 3 1275 24 32 0 0 chr12 90535103 90535134 -30722396 + AT_rich Low_complexity Low_complexity 1 31 0 3 1275 259 357 56 7 chr12 90535518 90535662 -30721868 + MER5A1 DNA MER1_type 16 166 0 3 1275 665 79 24 3 chr12 90535963 90536081 -30721449 - L1_Mus3 LINE L1 -445 6191 6104 3 1275 3141 93 4 15 chr12 90536081 90536539 -30720991 + L1_Mus3 LINE L1 6181 6633 -5 3 1275 270 73 0 0 chr12 90536542 90536583 -30720947 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1275 215 297 95 0 chr12 90537281 90537355 -30720175 + ID4_ SINE ID 1 81 -2 3 1275 341 43 21 0 chr12 90537356 90537403 -30720127 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 3 1275 375 236 0 96 chr12 90537584 90537720 -30719810 - MER57E1 LTR ERV1 -199 173 51 3 1275 198 255 0 0 chr12 90538298 90538349 -30719181 + MER5A DNA MER1_type 62 112 -77 3 1275 189 0 0 0 chr12 90539346 90539367 -30718163 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 1275 291 254 126 8 chr12 90539893 90540020 -30717510 + L1MD3 LINE L1 7732 7873 -122 4 1275 477 259 12 36 chr12 90540427 90540595 -30716935 - Lx6 LINE L1 -99 7361 7198 4 1275 213 39 0 0 chr12 90541430 90541456 -30716074 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1275 400 342 64 68 chr12 90541991 90542226 -30715304 + B4A SINE B4 48 281 -11 4 1275 477 0 0 0 chr12 90542260 90542313 -30715217 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1275 483 18 0 0 chr12 90542313 90542368 -30715162 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 1275 329 62 0 20 chr12 90542881 90542930 -30714600 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1275 623 323 84 25 chr12 90542982 90543220 -30714310 - B4A SINE B4 -35 257 6 4 1275 507 355 25 62 chr12 90544273 90544516 -30713014 - B4A SINE B4 -58 234 1 4 1275 323 294 19 19 chr12 90545486 90545611 -30711919 - PB1D10 SINE Alu -24 125 8 5 1275 198 103 0 0 chr12 90545647 90545676 -30711854 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 5 1275 324 316 10 20 chr12 90545677 90545777 -30711753 - PB1D9 SINE Alu -20 100 2 5 1275 257 75 25 0 chr12 90546132 90546172 -30711358 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 5 1275 8985 129 34 1 chr12 90546174 90548522 -30709008 - Lx LINE L1 -14 6640 4215 5 1275 180 30 29 57 chr12 90549025 90549060 -30708470 + L2b LINE L2 3342 3375 0 5 1275 475 360 72 34 chr12 90550090 90550227 -30707303 - MLT1E LTR MaLR -2 651 503 5 1275 882 243 150 39 chr12 90550227 90550561 -30706969 - ORR1D1 LTR MaLR -3 371 1 5 1275 475 360 72 34 chr12 90550561 90550685 -30706845 - MLT1E LTR MaLR -151 502 380 5 1275 279 0 0 0 chr12 90551885 90551916 -30705614 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1275 341 350 50 101 chr12 90552387 90552546 -30704984 + B4 SINE B4 1 151 -141 5 1275 343 255 92 61 chr12 90554015 90554178 -30703352 + MER113 DNA MER1_type 140 307 -214 6 1275 222 105 0 0 chr12 90554528 90554566 -30702964 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1275 238 286 39 13 chr12 90554766 90554844 -30702686 - MER5A1 DNA MER1_type -3 163 84 6 1275 297 0 0 0 chr12 90556108 90556141 -30701389 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1275 223 275 0 14 chr12 90556150 90556220 -30701310 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 6 1275 22 0 0 0 chr12 90556450 90556472 -30701058 + AT_rich Low_complexity Low_complexity 1 22 0 6 1275 22 35 0 0 chr12 90557619 90557648 -30699882 + AT_rich Low_complexity Low_complexity 1 29 0 6 1275 228 290 130 43 chr12 90558418 90558580 -30698950 - MER5B DNA MER1_type 0 178 3 6 1275 24 0 0 0 chr12 90559015 90559039 -30698491 + AT_rich Low_complexity Low_complexity 1 24 0 6 1275 707 343 65 43 chr12 90559574 90560348 -30697182 + L1ME3B LINE L1 4514 5304 -842 6 1275 441 334 151 34 chr12 90560454 90561012 -30696518 + L1ME3B LINE L1 5438 6060 -180 6 1275 501 62 0 0 chr12 90561413 90561478 -30696052 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 7 1275 528 81 0 0 chr12 90562477 90562551 -30694979 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1275 747 317 68 12 chr12 90562759 90563263 -30694267 + L1MC4a LINE L1 7104 7635 -247 7 1275 441 0 0 0 chr12 90563282 90563331 -30694199 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 1275 235 360 126 25 chr12 90563752 90563991 -30693539 - L2 LINE L2 -493 2926 2664 7 1275 229 312 143 0 chr12 90565316 90565393 -30692137 + L2a LINE L2 3300 3387 -39 7 1275 213 132 0 0 chr12 90566119 90566157 -30691373 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1275 321 26 0 0 chr12 90566217 90566255 -30691275 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1275 402 314 126 48 chr12 90566321 90566488 -30691042 - B3A SINE B2 -15 180 1 7 1275 640 261 14 21 chr12 90566488 90566624 -30690906 - B4 SINE B4 -67 225 91 7 1275 303 28 0 0 chr12 90566650 90566686 -30690844 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1275 326 273 13 0 chr12 90566711 90566788 -30690742 - B4A SINE B4 -212 80 3 7 1275 331 389 81 75 chr12 90567500 90567822 -30689708 + LTR33 LTR ERVL 33 356 -159 8 1275 297 118 0 0 chr12 90567838 90567889 -30689641 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1275 196 267 65 127 chr12 90568012 90568144 -30689386 - MIR SINE MIR -107 161 49 8 1275 243 381 87 5 chr12 90568314 90568509 -30689021 + L2 LINE L2 2747 2957 -462 8 1275 532 317 73 15 chr12 90568530 90568735 -30688795 + MER20 DNA MER1_type 1 217 -2 8 1275 1436 198 76 29 chr12 90569014 90569357 -30688173 - Lx9 LINE L1 -862 6782 6424 8 1275 887 173 28 158 chr12 90569350 90569514 -30688016 + Lx9 LINE L1 6979 7119 -525 8 1275 2337 94 58 0 chr12 90569514 90569856 -30687674 + L1_Mus3 LINE L1 6275 6636 -2 8 1275 887 173 28 158 chr12 90569856 90569945 -30687585 + Lx9 LINE L1 7120 7199 -445 8 1275 273 264 114 11 chr12 90569951 90570039 -30687491 + Lx9 LINE L1 7154 7250 -394 8 159 23 54 0 0 chr12 90570737 90570774 -30686756 + AT_rich Low_complexity Low_complexity 1 37 0 8 1276 2301 77 27 9 chr12 90571396 90571725 -30685805 - L1_Mus3 LINE L1 -1 6637 6303 9 1276 411 390 0 25 chr12 90572371 90572529 -30685001 + RSINE1 SINE B4 8 161 -4 9 1276 491 96 12 0 chr12 90572532 90572615 -30684915 + (CATA)n Simple_repeat Simple_repeat 2 85 0 9 1276 456 288 9 9 chr12 90572615 90572720 -30684810 + B1F SINE Alu 32 136 -13 9 1276 330 271 0 0 chr12 90572823 90572893 -30684637 + ID4_ SINE ID 4 73 -10 9 1276 22 0 0 0 chr12 90573109 90573131 -30684399 + AT_rich Low_complexity Low_complexity 1 22 0 9 1276 8882 91 8 6 chr12 90573260 90574536 -30682994 - L1_Mus1 LINE L1 -642 5241 3963 9 1276 7701 72 8 0 chr12 90574532 90575853 -30681677 + L1_Mus1 LINE L1 5237 6567 0 9 1276 1282 255 65 42 chr12 90576042 90576398 -30681132 + MTEa LTR MaLR 16 379 0 9 1276 309 358 71 93 chr12 90576416 90576739 -30680791 - MER77 LTR ERVL -58 549 234 9 1276 268 280 27 27 chr12 90577228 90577338 -30680192 + HAL1b LINE L1 1835 1944 -65 9 1276 34 24 0 0 chr12 90577383 90577424 -30680106 + AT_rich Low_complexity Low_complexity 1 41 0 1 1276 270 390 0 9 chr12 90578027 90578133 -30679397 + B4A SINE B4 16 120 -172 1 1276 571 288 30 53 chr12 90578182 90578351 -30679179 + B4A SINE B4 124 288 -4 1 1276 236 411 99 34 chr12 90578405 90578790 -30678740 + L1M4b LINE L1 169 578 -6756 1 1276 952 164 120 34 chr12 90578799 90579007 -30678523 - URR1A DNA MER1_type 0 226 1 1 1276 347 343 20 10 chr12 90579968 90580171 -30677359 + L1M4b LINE L1 1383 1587 -5747 1 1276 2384 296 34 78 chr12 90580174 90581190 -30676340 + RCHARR1 DNA MER1_type 3 974 0 1 1276 251 253 144 5 chr12 90581192 90581379 -30676151 + L1M4b LINE L1 1583 1795 -5539 1 1276 393 75 0 0 chr12 90581411 90581464 -30676066 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1276 847 271 93 52 chr12 90581471 90582475 -30675055 + L1M4b LINE L1 1896 3048 -4286 1 1276 810 328 30 19 chr12 90582726 90583099 -30674431 - MTEa LTR MaLR -2 377 1 1 1276 203 156 0 0 chr12 90583221 90583253 -30674277 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1276 244 216 0 0 chr12 90583853 90583904 -30673626 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1276 208 289 65 28 chr12 90584072 90584179 -30673351 + MIR SINE MIR 152 262 0 1 1276 933 326 52 21 chr12 90584734 90585063 -30672467 - MER2 DNA MER2_type -6 339 1 1 1276 943 182 141 5 chr12 90586306 90586505 -30671025 - URR1A DNA MER1_type 0 226 1 1 1276 205 317 36 98 chr12 90586509 90586621 -30670909 - MIR3 SINE MIR -157 119 11 1 1276 198 0 0 0 chr12 90587025 90587047 -30670483 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1276 211 286 13 79 chr12 90589445 90589521 -30668009 - B1F SINE Alu -6 143 73 1 1276 260 279 0 112 chr12 90589915 90590004 -30667526 - MIR3 SINE MIR -115 93 15 1 1276 31 0 0 0 chr12 90591229 90591260 -30666270 + AT_rich Low_complexity Low_complexity 1 31 0 1 1276 24 0 0 0 chr12 90592345 90592369 -30665161 + AT_rich Low_complexity Low_complexity 1 24 0 1 1276 243 236 0 0 chr12 90592623 90592695 -30664835 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1276 237 314 11 23 chr12 90593709 90593797 -30663733 - MLT1J1 LTR MaLR -14 430 344 1 1276 277 315 36 42 chr12 90594591 90594783 -30662747 - L1MB8 LINE L1 -78 6100 5910 1 1276 777 325 99 3 chr12 90598164 90598507 -30659023 + MTEa LTR MaLR 4 379 0 1 1276 235 319 104 72 chr12 90598698 90598948 -30658582 - L1M5 LINE L1 -438 5686 5429 1 1276 201 271 0 40 chr12 90599254 90599304 -30658226 + MIRc SINE MIR 113 160 -108 1 1276 195 139 0 0 chr12 90599835 90599871 -30657659 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 1 1276 425 203 0 0 chr12 90601272 90601346 -30656184 + MER57F LTR ERV1 3 76 -360 1 1276 563 333 82 33 chr12 90601357 90601514 -30656016 + MER57F LTR ERV1 118 288 -148 1 1276 3280 55 2 5 chr12 90601514 90601934 -30655596 - L1Md_F2 LINE L1 -1 6581 6163 1 1276 563 333 82 33 chr12 90601934 90602080 -30655450 + MER57F LTR ERV1 289 436 0 1 1276 209 119 24 0 chr12 90602221 90602263 -30655267 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1276 1488 11 11 0 chr12 90603760 90603940 -30653590 + L1Md_A LINE L1 6401 6582 0 1 1276 396 0 0 0 chr12 90606640 90606684 -30650846 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1276 566 292 40 66 chr12 90606702 90606929 -30650601 - B4A SINE B4 -2 290 70 1 1276 650 230 0 36 chr12 90606950 90607090 -30650440 - B1F2 SINE Alu -1 148 14 1 1276 536 305 13 94 chr12 90606959 90607194 -30650336 - B4A SINE B4 -75 217 2 1 1276 22 0 0 0 chr12 90607214 90607236 -30650294 + AT_rich Low_complexity Low_complexity 1 22 0 1 1276 249 299 0 72 chr12 90607245 90607328 -30650202 - MER45R DNA Tip100 -1 1580 1504 1 1276 416 315 44 53 chr12 90609314 90609539 -30647991 - MER58A DNA MER1_type -1 223 1 1 1276 218 309 52 67 chr12 90609833 90609968 -30647562 - L2c LINE L2 -233 3154 3022 1 1276 360 0 0 0 chr12 90610992 90611032 -30646498 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1276 2001 138 76 3 chr12 90611376 90611718 -30645812 - ORR1B2 LTR MaLR 0 367 1 1 1276 257 314 50 8 chr12 90614268 90614387 -30643143 - MIRb SINE MIR -20 248 125 1 1276 222 200 227 15 chr12 90614400 90614466 -30643064 - L2a LINE L2 -8 3418 3339 1 1276 639 0 0 0 chr12 90615384 90615455 -30642075 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1276 324 0 0 0 chr12 90616065 90616101 -30641429 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1276 7484 94 11 5 chr12 90616184 90617519 -30640011 - L1_Mus3 LINE L1 -1 6637 5297 1 1276 5499 129 10 2 chr12 90617516 90618388 -30639142 + L1_Mm LINE L1 4239 5117 -766 1 1276 1442 80 0 5 chr12 90618382 90618582 -30638948 + L1_Mus1 LINE L1 5766 5964 -603 1 1276 816 136 14 7 chr12 90618573 90618714 -30638816 + L1_Mur2 LINE L1 5136 5277 -600 1 1276 2113 150 46 5 chr12 90619247 90619616 -30637914 - ORR1B1 LTR MaLR -8 386 3 1 1276 5819 161 46 162 chr12 90619634 90620718 -30636812 - ORR1B1-int LTR MaLR -51 1912 868 1 1276 324 70 0 0 chr12 90620718 90620761 -30636769 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1 1276 5819 161 46 162 chr12 90620761 90621362 -30636168 - ORR1B1-int LTR MaLR -1096 867 422 1 1276 570 235 43 48 chr12 90622108 90622296 -30635234 + B3A SINE B2 3 189 -9 1 1276 346 351 73 30 chr12 90623283 90623515 -30634015 - MIRb SINE MIR -2 266 25 1 1276 470 310 54 43 chr12 90623803 90624034 -30633496 - MTEa LTR MaLR 0 379 136 1 1276 1052 79 7 0 chr12 90624058 90624210 -30633320 + (GA)n Simple_repeat Simple_repeat 2 154 0 1 1276 575 226 219 6 chr12 90624301 90624479 -30633051 - B3 SINE B2 0 216 1 1 1276 449 327 84 6 chr12 90624481 90624647 -30632883 - MTEa LTR MaLR -192 187 9 1 1276 217 326 0 22 chr12 90624693 90624784 -30632746 + CT-rich Low_complexity Low_complexity 2 90 0 1 1276 219 69 0 0 chr12 90625107 90625136 -30632394 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1276 181 344 31 54 chr12 90627190 90627319 -30630211 - MIRb SINE MIR -136 132 7 1 1276 22 80 0 0 chr12 90627655 90627705 -30629825 + AT_rich Low_complexity Low_complexity 1 50 0 1 1276 293 304 0 0 chr12 90628039 90628108 -30629422 - ID4 SINE ID 0 83 15 1 1276 239 220 17 0 chr12 90628247 90628306 -30629224 + MIR SINE MIR 126 185 -77 1 1276 184 257 38 63 chr12 90628731 90628810 -30628720 - MIR3 SINE MIR 0 208 132 1 1276 241 336 56 9 chr12 90629221 90629329 -30628201 - MLT1C LTR MaLR -61 406 294 1 1276 192 40 0 0 chr12 90629492 90629517 -30628013 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1276 279 356 35 9 chr12 90630146 90630262 -30627268 + MIRb SINE MIR 102 220 -48 1 1276 568 271 0 46 chr12 90630688 90630839 -30626691 + B1F SINE Alu 4 147 -2 1 1276 207 100 0 0 chr12 90630839 90630869 -30626661 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1 1276 225 163 0 0 chr12 90631691 90631740 -30625790 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1276 213 330 122 9 chr12 90634793 90634933 -30622597 + MIR SINE MIR 4 151 -111 1 1276 755 297 79 12 chr12 90634936 90635188 -30622342 + B4A SINE B4 1 269 -23 1 1276 390 42 0 0 chr12 90635189 90635237 -30622293 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1276 561 30 0 0 chr12 90636085 90636152 -30621378 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1276 301 309 56 24 chr12 90636159 90636285 -30621245 - MIR SINE MIR -57 151 22 1 1276 270 342 0 50 chr12 90636411 90636491 -30621039 + RSINE1 SINE B4 84 159 -6 1 1276 588 179 0 0 chr12 90636794 90636911 -30620619 + (TA)n Simple_repeat Simple_repeat 2 118 0 1 1276 279 79 0 0 chr12 90637280 90637318 -30620212 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 1276 319 336 26 26 chr12 90637347 90637460 -30620070 - MER63A DNA AcHobo -79 131 19 1 1276 361 329 42 14 chr12 90637994 90638136 -30619394 + RSINE1 SINE B4 18 163 -2 1 1276 30 0 0 0 chr12 90638255 90638285 -30619245 + AT_rich Low_complexity Low_complexity 1 30 0 1 1276 189 0 0 0 chr12 90640415 90640436 -30617094 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1276 21 36 0 0 chr12 90641845 90641873 -30615657 + AT_rich Low_complexity Low_complexity 1 28 0 1 1276 225 0 0 0 chr12 90642156 90642181 -30615349 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1276 414 0 0 0 chr12 90643552 90643598 -30613932 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1276 256 385 25 35 chr12 90646315 90646517 -30611013 + MIRb SINE MIR 69 268 0 1 1276 26 0 0 0 chr12 90646702 90646728 -30610802 + AT_rich Low_complexity Low_complexity 1 26 0 1 1276 271 0 0 49 chr12 90647957 90647998 -30609532 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1276 1045 86 0 0 chr12 90647998 90648137 -30609393 - B1_Mus1 SINE Alu -9 139 1 1 1276 190 292 130 17 chr12 90649002 90649117 -30608413 - MIR SINE MIR -54 208 81 1 1276 7187 145 40 139 chr12 90649184 90650706 -30606824 + ORR1A4-int LTR MaLR 425 1770 -193 1 1276 224 59 29 0 chr12 90650706 90650740 -30606790 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1276 7187 145 40 139 chr12 90650740 90650903 -30606627 + ORR1A4-int LTR MaLR 1771 1942 -21 1 1276 1763 154 32 62 chr12 90650903 90651242 -30606288 + ORR1A4 LTR MaLR 1 329 0 1 1276 257 266 129 53 chr12 90651724 90651895 -30605635 - Lx8 LINE L1 -1 7472 7289 1 1276 698 275 71 46 chr12 90652089 90652371 -30605159 + B4 SINE B4 2 290 -2 1 1276 339 167 0 0 chr12 90652407 90652473 -30605057 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1276 308 342 0 0 chr12 90652847 90652961 -30604569 - PB1D10 SINE Alu -3 114 1 1 1276 2599 72 122 5 chr12 90653407 90653784 -30603746 - BGLII LTR ERVK 0 421 1 1 1276 200 297 11 21 chr12 90653796 90653889 -30603641 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 1 1276 4243 46 9 2 chr12 90653956 90654496 -30603034 - LTRIS2 LTR ERV1 -16 548 5 1 1276 23 0 0 0 chr12 90655681 90655704 -30601826 + AT_rich Low_complexity Low_complexity 1 23 0 1 1276 3253 74 51 30 chr12 90655704 90656176 -30601354 - Lx3_Mus LINE L1 0 7009 6528 1 1276 1045 130 48 11 chr12 90656176 90656363 -30601167 - B2_Mm2 SINE B2 -1 194 1 1 1276 809 297 86 71 chr12 90656518 90656996 -30600534 - MER31A LTR ERV1 0 485 1 2 1276 2360 80 25 0 chr12 90657314 90657638 -30599892 - L1Md_F2 LINE L1 -446 6136 5805 2 1276 3217 92 5 2 chr12 90657638 90658076 -30599454 + L1_Mus1 LINE L1 6129 6567 0 2 1276 320 354 13 26 chr12 90658220 90658371 -30599159 - MLT1E1A LTR MaLR -382 298 150 2 1276 221 119 0 23 chr12 90659318 90659361 -30598169 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 2 1276 666 357 17 17 chr12 90659496 90659798 -30597732 - Lx9 LINE L1 -271 7373 7072 2 1276 228 305 20 40 chr12 90660765 90660864 -30596666 + MER5A DNA MER1_type 4 100 -89 2 1276 1189 325 72 21 chr12 90660918 90661442 -30596088 + Lx8 LINE L1 6923 7473 0 2 1276 4043 2 0 0 chr12 90661551 90662029 -30595501 + L1Md_A LINE L1 6135 6582 0 2 1276 203 311 16 0 chr12 90662091 90662152 -30595378 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1276 475 311 91 24 chr12 90662154 90662319 -30595211 - B4A SINE B4 -71 221 46 2 1276 279 0 0 0 chr12 90663274 90663305 -30594225 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1276 452 323 0 0 chr12 90663580 90663707 -30593823 - RSINE1 SINE B4 -36 129 3 2 1276 730 215 0 7 chr12 90663858 90664008 -30593522 + B1_Mur4 SINE Alu 2 150 0 2 1276 240 348 61 18 chr12 90664070 90664184 -30593346 - MIR SINE MIR -128 134 16 2 1276 517 305 37 11 chr12 90664819 90665008 -30592522 + MIR SINE MIR 69 262 0 2 1276 194 398 65 0 chr12 90665959 90666052 -30591478 - L2b LINE L2 -22 3353 3255 2 1276 1303 291 58 73 chr12 90666730 90667153 -30590377 - L1MA8 LINE L1 -50 6241 5824 2 1276 255 31 0 0 chr12 90667153 90667185 -30590345 + (CTTG)n Simple_repeat Simple_repeat 1 32 0 2 1276 1292 63 6 0 chr12 90667186 90667361 -30590169 + (TTTC)n Simple_repeat Simple_repeat 4 179 0 2 1276 1303 291 58 73 chr12 90667361 90667586 -30589944 - L1MA8 LINE L1 -468 5823 5589 2 1276 2919 90 2 12 chr12 90667586 90667990 -30589540 - MTB LTR MaLR 0 400 1 2 1276 1303 291 58 73 chr12 90667990 90668119 -30589411 - L1MA8 LINE L1 -703 5588 5455 2 1276 3501 36 0 5 chr12 90668119 90668540 -30588990 + L1Md_F3 LINE L1 6165 6583 -1 2 1276 1303 291 58 73 chr12 90668540 90668761 -30588769 - L1MA8 LINE L1 -837 5454 5258 2 1276 234 322 55 85 chr12 90669353 90669553 -30587977 - MLT1B LTR MaLR -193 197 4 2 1276 479 95 14 0 chr12 90669771 90669845 -30587685 + (TATG)n Simple_repeat Simple_repeat 1 75 0 2 1276 446 365 48 24 chr12 90671377 90671585 -30585945 + MIR SINE MIR 21 233 -29 2 1276 379 294 14 105 chr12 90671641 90671850 -30585680 - B2_Mm2 SINE B2 -5 190 1 2 1276 350 370 36 29 chr12 90672090 90672229 -30585301 - RSINE1 SINE B4 -22 143 4 2 1276 908 190 130 0 chr12 90672637 90672837 -30584693 - URR1A DNA MER1_type 0 226 1 2 1276 310 333 10 0 chr12 90673170 90673266 -30584264 - MLT1J1 LTR MaLR -285 159 63 2 1276 980 84 21 14 chr12 90675687 90675832 -30581698 + B1_Mm SINE Alu 2 147 0 2 1276 243 0 0 0 chr12 90675939 90675966 -30581564 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 2 1276 540 0 0 0 chr12 90676232 90676292 -30581238 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1276 414 0 0 0 chr12 90676293 90676339 -30581191 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1276 605 242 144 0 chr12 90676475 90676669 -30580861 + Lx9 LINE L1 7267 7488 -156 2 1276 195 42 0 0 chr12 90676669 90676693 -30580837 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1276 292 219 100 8 chr12 90676693 90676800 -30580730 + Lx9 LINE L1 7519 7637 -7 2 1276 721 187 173 21 chr12 90677374 90677565 -30579965 - URR1B DNA MER1_type -5 220 1 2 1276 233 312 25 38 chr12 90679616 90679696 -30577834 - ID4_ SINE ID 0 83 5 2 1276 509 105 12 0 chr12 90680121 90680207 -30577323 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 1276 750 283 115 25 chr12 90680225 90680468 -30577062 - B4A SINE B4 -26 266 2 2 1276 294 235 62 0 chr12 90680620 90680701 -30576829 + CT-rich Low_complexity Low_complexity 4 89 0 2 1276 697 306 24 0 chr12 90681731 90681940 -30575590 - ID_B1 SINE B4 -9 215 2 2 1276 405 0 0 0 chr12 90682252 90682297 -30575233 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1276 279 0 0 0 chr12 90682297 90682327 -30575203 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1276 190 136 85 0 chr12 90682330 90682389 -30575141 + (TCTCTG)n Simple_repeat Simple_repeat 6 69 0 2 1276 1818 187 83 16 chr12 90682680 90683065 -30574465 - MTD LTR MaLR -8 411 1 2 1276 478 366 107 15 chr12 90683082 90683171 -30574359 + MER58A DNA MER1_type 1 93 -131 2 1276 324 0 0 0 chr12 90683171 90683207 -30574323 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1276 495 0 0 0 chr12 90683207 90683261 -30574269 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1276 478 366 107 15 chr12 90683261 90683375 -30574155 + MER58A DNA MER1_type 94 223 -1 2 1276 260 137 0 19 chr12 90684073 90684125 -30573405 + (TATG)n Simple_repeat Simple_repeat 4 54 0 2 1276 432 82 0 0 chr12 90684579 90684640 -30572890 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1276 441 0 0 0 chr12 90684884 90684933 -30572597 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1276 261 0 0 0 chr12 90684933 90684961 -30572569 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1276 337 190 0 20 chr12 90685570 90685672 -30571858 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1276 534 289 49 14 chr12 90686533 90686677 -30570853 - B3 SINE B2 -66 150 2 2 1276 257 315 133 36 chr12 90687063 90687263 -30570267 - MIRc SINE MIR -40 228 3 2 1276 514 197 0 14 chr12 90687390 90687529 -30570001 + (TA)n Simple_repeat Simple_repeat 2 138 0 2 1276 479 258 64 8 chr12 90687529 90687654 -30569876 - B4A SINE B4 -48 244 113 2 1276 360 0 0 0 chr12 90688168 90688208 -30569322 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1276 667 340 91 8 chr12 90688226 90688469 -30569061 - B4 SINE B4 -28 264 2 2 1276 728 85 0 102 chr12 90688659 90688856 -30568674 + CT-rich Low_complexity Low_complexity 1 177 0 2 1276 850 129 29 0 chr12 90688872 90688918 -30568612 + polypyrimidine Low_complexity Low_complexity 132 178 0 2 1276 1281 56 6 11 chr12 90688918 90689099 -30568431 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1276 850 129 29 0 chr12 90689099 90689222 -30568308 + polypyrimidine Low_complexity Low_complexity 5 131 0 2 1276 360 353 60 0 chr12 90689669 90689785 -30567745 + ID_B1 SINE B4 93 215 -9 2 1276 349 305 99 25 chr12 90689814 90689935 -30567595 + B1F SINE Alu 13 142 -7 2 1276 701 289 15 30 chr12 90689939 90690139 -30567391 + B3 SINE B2 1 197 -19 2 1276 23 0 0 0 chr12 90690284 90690307 -30567223 + AT_rich Low_complexity Low_complexity 1 23 0 2 1276 2743 195 42 42 chr12 90690525 90691092 -30566438 - RLTR20D LTR ERVK 0 568 2 2 1276 5723 154 50 13 chr12 90691093 90692306 -30565224 - MYSERV16_I-int LTR ERVK -2 2324 1067 2 1276 566 96 0 11 chr12 90692311 90692406 -30565124 - MYSERV16_I-int LTR ERVK -1393 933 840 2 1276 207 0 0 0 chr12 90692439 90692462 -30565068 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1276 725 264 42 21 chr12 90693040 90693058 -30564472 - B3A SINE B2 0 198 181 2 1276 333 0 0 0 chr12 90693058 90693095 -30564435 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1276 423 56 0 0 chr12 90693095 90693148 -30564382 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1276 725 264 42 21 chr12 90693148 90693318 -30564212 - B3A SINE B2 -18 180 6 2 1276 236 189 0 0 chr12 90693328 90693365 -30564165 - B3A SINE B2 -160 38 2 2 1276 350 320 46 18 chr12 90693693 90693865 -30563665 - MIRb SINE MIR -42 226 45 2 1276 405 295 197 11 chr12 90693897 90694075 -30563455 + MER20 DNA MER1_type 1 211 -8 2 1276 21 0 0 0 chr12 90695126 90695147 -30562383 + AT_rich Low_complexity Low_complexity 1 21 0 2 1276 23 33 0 0 chr12 90695254 90695284 -30562246 + AT_rich Low_complexity Low_complexity 1 30 0 2 1276 497 316 103 32 chr12 90697060 90697314 -30560216 + B4A SINE B4 2 268 -24 2 1276 2645 36 9 6 chr12 90697864 90698195 -30559335 - L1Md_F3 LINE L1 -14 6570 6239 2 1276 233 366 56 28 chr12 90698514 90698694 -30558836 - L3 LINE CR1 -645 3844 3660 2 1276 270 344 73 16 chr12 90698738 90698930 -30558600 - MIR SINE MIR -26 236 34 2 1276 216 0 0 0 chr12 90699069 90699093 -30558437 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1276 376 366 14 50 chr12 90699103 90699244 -30558286 - B4A SINE B4 0 292 157 2 1276 562 240 36 121 chr12 90699256 90699422 -30558108 - B4A SINE B4 -131 161 10 2 1276 1290 250 69 14 chr12 90699434 90699824 -30557706 - MTD LTR MaLR -6 413 6 2 1276 23 33 0 0 chr12 90699831 90699861 -30557669 + AT_rich Low_complexity Low_complexity 1 30 0 2 1276 259 362 92 48 chr12 90700352 90700581 -30556949 - L4 LINE RTE -182 1847 1609 2 1276 588 65 0 0 chr12 90700997 90701074 -30556456 + (TA)n Simple_repeat Simple_repeat 2 78 0 2 1276 225 65 0 0 chr12 90701089 90701120 -30556410 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1276 432 320 87 45 chr12 90701153 90701418 -30556112 - B4 SINE B4 -16 276 1 2 159 471 295 79 10 chr12 90701689 90701891 -30555639 - ID_B1 SINE B4 -7 217 2 2 1277 598 250 0 13 chr12 90701985 90702135 -30555395 - B1_Mur1 SINE Alu 0 149 2 2 1277 945 50 0 0 chr12 90702431 90702550 -30554980 + (TCTCC)n Simple_repeat Simple_repeat 5 123 0 2 1277 477 122 0 0 chr12 90702550 90702624 -30554906 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 2 1277 650 174 31 31 chr12 90702643 90702803 -30554727 - Lx4B LINE L1 -3 7055 6896 2 1277 244 316 86 26 chr12 90702950 90703067 -30554463 - MER94 DNA AcHobo -10 124 1 2 1277 768 278 74 58 chr12 90703487 90703859 -30553671 - MLT1B LTR MaLR -10 398 8 2 1277 955 164 141 5 chr12 90703893 90704077 -30553453 - ORR1B1 LTR MaLR -184 210 2 2 1277 223 171 0 0 chr12 90705897 90705932 -30551598 - MIRc SINE MIR -148 120 86 2 1277 535 345 50 17 chr12 90706696 90706935 -30550595 - MLT1I LTR MaLR -14 397 151 2 1277 377 245 9 47 chr12 90706967 90707074 -30550456 - MLT1A1 LTR MaLR -2 406 304 3 1277 261 261 32 11 chr12 90707156 90707249 -30550281 + GA-rich Low_complexity Low_complexity 1 95 0 3 1277 182 160 20 0 chr12 90707265 90707315 -30550215 + GA-rich Low_complexity Low_complexity 3 53 0 3 1277 207 0 0 0 chr12 90707465 90707488 -30550042 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1277 1099 109 0 0 chr12 90707513 90707660 -30549870 - B1_Mus2 SINE Alu 0 147 1 3 1277 676 378 54 36 chr12 90708105 90708495 -30549035 - MER21B LTR ERV1 -429 434 38 3 1277 328 335 89 120 chr12 90709462 90709821 -30547709 + ORR1E LTR MaLR 1 348 -11 3 1277 638 295 53 37 chr12 90711390 90711580 -30545950 + B4A SINE B4 27 219 -73 3 1277 444 291 62 75 chr12 90711585 90711745 -30545785 + B4 SINE B4 3 160 -132 3 1277 2028 100 0 3 chr12 90711767 90712079 -30545451 + Lx LINE L1 6274 6584 -70 3 1277 270 286 91 0 chr12 90712115 90712192 -30545338 + B4 SINE B4 197 280 -12 3 1277 447 100 0 0 chr12 90712257 90712327 -30545203 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1277 651 179 57 8 chr12 90713089 90713213 -30544317 - B1_Mus2 SINE Alu -17 130 1 3 1277 22 35 0 0 chr12 90713513 90713542 -30543988 + AT_rich Low_complexity Low_complexity 1 29 0 3 1277 239 346 100 88 chr12 90713770 90714030 -30543500 + LTR16C LTR ERVL 212 474 -15 3 1277 230 269 212 34 chr12 90714116 90714262 -30543268 + MIR SINE MIR 91 262 0 3 1277 911 242 4 35 chr12 90715074 90715305 -30542225 - URR1A DNA MER1_type -2 224 1 3 1277 231 137 0 56 chr12 90716845 90716899 -30540631 + T-rich Low_complexity Low_complexity 2 52 0 3 1277 210 37 0 0 chr12 90716924 90716951 -30540579 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1277 313 215 109 20 chr12 90718923 90719031 -30538499 + B4A SINE B4 149 280 -12 3 1277 465 19 0 0 chr12 90719095 90719149 -30538381 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1277 516 234 14 81 chr12 90720290 90720499 -30537031 - RMER17C LTR ERVK -215 195 1 3 1277 245 339 8 67 chr12 90720533 90720653 -30536877 - MIRb SINE MIR -134 134 22 3 1277 1620 177 134 25 chr12 90721767 90722126 -30535404 - RMER10B LTR ERVL 0 398 1 3 1277 591 15 0 0 chr12 90723171 90723239 -30534291 + (TTTTG)n Simple_repeat Simple_repeat 2 69 0 3 1277 1078 59 0 0 chr12 90723241 90723376 -30534154 - B1_Mus1 SINE Alu -12 136 2 3 1277 276 300 0 0 chr12 90723750 90723830 -30533700 + RMER10B LTR ERVL 145 224 -174 3 1277 848 247 41 10 chr12 90723823 90724019 -30533511 - RMER10B LTR ERVL -12 386 185 3 1277 696 28 28 9 chr12 90724781 90724890 -30532640 + L1Md_F3 LINE L1 6474 6584 0 3 1277 687 122 91 21 chr12 90725259 90725402 -30532128 - RMER17B LTR ERVK -495 463 311 3 1277 450 0 0 0 chr12 90727965 90728015 -30529515 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1277 227 347 88 58 chr12 90728263 90728468 -30529062 - MLT1I LTR MaLR 0 411 201 3 1277 192 179 0 0 chr12 90728720 90728759 -30528771 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1277 903 242 14 5 chr12 90728840 90729048 -30528482 - B3 SINE B2 -6 210 1 3 1277 1226 88 55 6 chr12 90729056 90729238 -30528292 - B2_Mm2 SINE B2 -4 191 1 3 1277 1698 206 56 31 chr12 90729280 90729670 -30527860 - Lx5 LINE L1 -148 6902 6503 3 1277 3254 51 0 0 chr12 90729662 90730093 -30527437 + L1_Mm LINE L1 3624 4054 -1829 3 1277 294 29 0 0 chr12 90730435 90730470 -30527060 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1277 27 0 0 0 chr12 90730671 90730698 -30526832 + AT_rich Low_complexity Low_complexity 1 27 0 3 1277 920 287 157 28 chr12 90730707 90731460 -30526070 - Lx8 LINE L1 -18 7455 6606 3 1277 215 167 20 20 chr12 90732681 90732730 -30524800 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1277 237 360 102 55 chr12 90733903 90734138 -30523392 + L2 LINE L2 2575 2820 -599 3 1277 336 316 0 12 chr12 90734138 90734218 -30523312 + B4A SINE B4 1 79 -213 3 1277 231 61 0 0 chr12 90734218 90734251 -30523279 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 3 1277 1056 194 45 27 chr12 90734268 90734490 -30523040 + URR1A DNA MER1_type 1 226 0 3 1277 324 323 105 58 chr12 90735111 90735282 -30522248 + B4A SINE B4 106 284 -8 3 1277 383 52 17 0 chr12 90735638 90735696 -30521834 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 3 1277 423 0 0 0 chr12 90735788 90735835 -30521695 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1277 1337 236 34 75 chr12 90735844 90736522 -30521008 - RLTR18B LTR ERVK -4 508 1 3 1277 248 0 31 0 chr12 90737983 90738015 -30519515 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1277 383 20 0 38 chr12 90738763 90738816 -30518714 + (TAA)n Simple_repeat Simple_repeat 1 51 0 3 1277 243 0 0 0 chr12 90740056 90740083 -30517447 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 3 1277 513 0 0 0 chr12 90740791 90740848 -30516682 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 3 1277 278 348 102 18 chr12 90742035 90742202 -30515328 - L2b LINE L2 -1 3425 3245 3 1277 188 362 68 17 chr12 90742740 90742917 -30514613 + MIR3 SINE MIR 13 198 -10 3 1277 270 0 0 0 chr12 90742993 90743023 -30514507 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1277 256 61 39 39 chr12 90743023 90743074 -30514456 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 3 1277 246 323 37 66 chr12 90743126 90743262 -30514268 - MIRb SINE MIR -46 222 91 3 1277 255 61 0 0 chr12 90744131 90744164 -30513366 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1277 237 139 0 0 chr12 90745054 90745097 -30512433 + (TTA)n Simple_repeat Simple_repeat 2 44 0 3 1277 183 318 48 0 chr12 90745907 90745970 -30511560 + L4 LINE RTE 1049 1114 -915 3 1277 192 97 0 0 chr12 90747731 90747762 -30509768 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1277 29 0 0 0 chr12 90747777 90747806 -30509724 + AT_rich Low_complexity Low_complexity 1 29 0 3 1277 186 338 118 0 chr12 90747843 90747911 -30509619 + MER5A DNA MER1_type 51 126 -63 3 1277 280 295 0 0 chr12 90748292 90748353 -30509177 + polypyrimidine Low_complexity Low_complexity 4 64 0 3 1277 607 179 18 9 chr12 90748359 90748472 -30509058 - B1_Mur4 SINE Alu 0 150 37 3 1277 312 345 0 0 chr12 90749549 90749633 -30507897 - U1 snRNA snRNA -2 163 80 3 1277 825 302 9 14 chr12 90749703 90749918 -30507612 + ID_B1 SINE B4 2 215 -9 3 1277 365 321 18 0 chr12 90750042 90750151 -30507379 + PB1D10 SINE Alu 2 112 -5 3 1277 304 264 145 30 chr12 90752084 90752268 -30505262 + MIR SINE MIR 46 262 0 3 1277 930 162 0 0 chr12 90752871 90753050 -30504480 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1277 396 314 91 17 chr12 90753335 90753480 -30504050 + B3A SINE B2 2 149 -67 3 1277 315 0 0 0 chr12 90753480 90753515 -30504015 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1277 342 347 65 84 chr12 90753515 90753583 -30503947 + B3 SINE B2 150 211 -5 3 1277 361 317 91 77 chr12 90753713 90754000 -30503530 + B4A SINE B4 2 292 0 3 1277 653 294 56 36 chr12 90754047 90754350 -30503180 - MER33 DNA MER1_type -15 309 1 3 1277 24 0 0 0 chr12 90755230 90755254 -30502276 + AT_rich Low_complexity Low_complexity 1 24 0 3 1277 276 53 0 0 chr12 90755559 90755597 -30501933 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1277 876 294 74 24 chr12 90757899 90758237 -30499293 - ORR1E LTR MaLR -2 357 3 3 1277 248 111 22 0 chr12 90759697 90759742 -30497788 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3 1277 393 287 47 40 chr12 90760085 90760234 -30497296 - RSINE1 SINE B4 -13 152 3 3 1277 207 295 206 15 chr12 90760731 90760862 -30496668 - MIRb SINE MIR -57 211 56 3 1277 28 0 0 0 chr12 90760969 90760997 -30496533 + AT_rich Low_complexity Low_complexity 1 28 0 3 1277 1867 207 37 10 chr12 90761022 90761225 -30496305 - MTC LTR MaLR 0 421 206 3 1277 255 79 0 0 chr12 90761225 90761263 -30496267 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 3 1277 1867 207 37 10 chr12 90761263 90761469 -30496061 - MTC LTR MaLR -216 205 1 3 1277 489 227 13 19 chr12 90761494 90761651 -30495879 + CT-rich Low_complexity Low_complexity 6 161 0 3 1277 473 0 18 0 chr12 90761651 90761708 -30495822 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1277 833 178 0 20 chr12 90763446 90763595 -30493935 - B1_Mus2 SINE Alu 0 147 2 3 1277 180 0 0 0 chr12 90763651 90763671 -30493859 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1277 281 26 26 0 chr12 90763674 90763712 -30493818 + (CAAT)n Simple_repeat Simple_repeat 1 39 0 3 1277 328 312 12 38 chr12 90763849 90764009 -30493521 + CT-rich Low_complexity Low_complexity 2 157 0 3 1277 785 169 28 67 chr12 90764053 90764231 -30493299 + URR1A DNA MER1_type 56 226 0 3 1277 318 286 38 106 chr12 90764303 90764643 -30492887 + L1MA7 LINE L1 5022 5338 -805 3 1277 1357 239 33 6 chr12 90764681 90765042 -30492488 + L1MA7 LINE L1 5406 5776 -515 3 1277 271 365 0 0 chr12 90765085 90765159 -30492371 + ID SINE ID 2 75 -149 3 1277 421 354 0 0 chr12 90765287 90765417 -30492113 + B4 SINE B4 76 205 -87 3 1277 511 277 107 28 chr12 90765566 90765960 -30491570 + L1MA7 LINE L1 5858 6282 -9 3 1277 2144 131 3 55 chr12 90766234 90766283 -30491247 + L1_Mus3 LINE L1 5522 5569 -314 3 1277 6244 45 1 10 chr12 90766283 90767065 -30490465 + L1Md_F2 LINE L1 5808 6582 0 3 1277 7158 86 5 26 chr12 90767065 90768167 -30489363 + L1_Mus3 LINE L1 5570 6630 -8 3 1277 926 34 8 0 chr12 90768226 90768344 -30489186 + (GAGAA)n Simple_repeat Simple_repeat 2 120 0 3 1277 277 303 110 0 chr12 90768345 90768454 -30489076 - MER5A DNA MER1_type -33 156 36 3 1277 821 50 8 0 chr12 90768462 90768581 -30488949 + L1Md_A LINE L1 6463 6582 0 3 1277 308 269 127 36 chr12 90769388 90769554 -30487976 + MER121 Unknown Unknown 141 321 -91 3 1277 37 0 0 0 chr12 90769903 90769940 -30487590 + AT_rich Low_complexity Low_complexity 1 37 0 3 1277 238 297 149 0 chr12 90770286 90770434 -30487096 - Charlie7a DNA MER1_type -87 185 16 3 1277 390 308 149 12 chr12 90770493 90770654 -30486876 - MER5A DNA MER1_type -2 187 5 3 1277 694 22 22 0 chr12 90772013 90772105 -30485425 + (TCTA)n Simple_repeat Simple_repeat 2 95 0 4 1277 928 92 43 25 chr12 90773724 90774001 -30483529 + (TCTA)n Simple_repeat Simple_repeat 1 281 0 4 1277 336 176 44 0 chr12 90774032 90774168 -30483362 + (TCTA)n Simple_repeat Simple_repeat 1 142 0 4 1277 688 284 69 87 chr12 90775190 90775522 -30482008 - Lx8 LINE L1 -8 7465 7140 4 1277 306 0 0 0 chr12 90775549 90775583 -30481947 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1277 1034 289 3 24 chr12 90777984 90778282 -30479248 - B4A SINE B4 0 292 1 4 1277 22 0 0 0 chr12 90778510 90778532 -30478998 + AT_rich Low_complexity Low_complexity 1 22 0 4 1277 311 337 59 95 chr12 90778547 90778990 -30478540 - LTR37B LTR ERV1 -9 459 33 4 1277 238 155 52 0 chr12 90779464 90779522 -30478008 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 4 1277 403 328 109 23 chr12 90780661 90780926 -30476604 - L1ME2 LINE L1 0 6164 5877 4 1277 247 364 20 7 chr12 90780946 90781098 -30476432 - L1MEc LINE L1 -6076 324 171 4 1277 217 246 16 66 chr12 90782047 90782108 -30475422 + L2a LINE L2 3367 3424 -2 4 1277 405 0 0 0 chr12 90782822 90782867 -30474663 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1277 221 304 0 35 chr12 90786461 90786519 -30471011 + ID4 SINE ID 17 72 -11 4 1277 359 224 0 9 chr12 90786528 90786636 -30470894 + (CA)n Simple_repeat Simple_repeat 1 107 0 4 1277 896 159 142 10 chr12 90787990 90788187 -30469343 + URR1A DNA MER1_type 4 226 0 4 1277 340 20 41 0 chr12 90788512 90788561 -30468969 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1277 387 0 0 0 chr12 90788561 90788603 -30468927 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1277 888 256 57 121 chr12 90789413 90789818 -30467712 - MTE2a LTR MaLR 0 379 1 4 1277 246 32 0 0 chr12 90792677 90792708 -30464822 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1277 201 74 0 0 chr12 90793626 90793653 -30463877 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1277 188 380 42 0 chr12 90794263 90794334 -30463196 - L2b LINE L2 -24 3351 3278 4 1277 255 156 47 0 chr12 90796078 90796142 -30461388 + (TTTG)n Simple_repeat Simple_repeat 3 69 0 4 1277 929 123 0 19 chr12 90796965 90797182 -30460348 + (TG)n Simple_repeat Simple_repeat 1 212 0 4 1277 355 317 116 7 chr12 90797900 90798046 -30459484 + RSINE1 SINE B4 4 165 0 4 1277 180 0 0 0 chr12 90798210 90798230 -30459300 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1277 854 153 28 7 chr12 90798468 90798613 -30458917 + B2_Mm2 SINE B2 1 148 -47 4 1277 336 299 0 43 chr12 90799624 90799664 -30457866 - BC1_Mm scRNA scRNA -18 134 98 4 1277 197 33 0 32 chr12 90799664 90799695 -30457835 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 4 1277 336 299 0 43 chr12 90799695 90799794 -30457736 - BC1_Mm scRNA scRNA -55 97 1 4 1277 23 33 0 0 chr12 90799799 90799829 -30457701 + AT_rich Low_complexity Low_complexity 1 30 0 4 1277 503 326 54 36 chr12 90799922 90800107 -30457423 - B4A SINE B4 -10 282 98 4 1277 1086 153 10 16 chr12 90800107 90800299 -30457231 - B2_Mm2 SINE B2 -4 191 1 4 1277 503 326 54 36 chr12 90800299 90800390 -30457140 - B4A SINE B4 -195 97 1 4 1277 360 0 0 0 chr12 90800402 90800442 -30457088 + (CATA)n Simple_repeat Simple_repeat 3 42 0 4 1277 205 288 81 81 chr12 90800641 90800728 -30456802 + MIRc SINE MIR 32 118 -150 4 1277 2939 255 54 17 chr12 90801254 90802081 -30455449 - RCHARR1 DNA MER1_type -65 909 52 4 1277 1305 250 48 39 chr12 90804258 90804616 -30452914 - MTE2a LTR MaLR 0 379 19 4 1277 429 20 0 0 chr12 90805498 90805548 -30451982 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1277 202 299 48 58 chr12 90806198 90806301 -30451229 - L2c LINE L2 -17 3370 3269 4 1277 200 102 0 71 chr12 90807804 90807846 -30449684 + T-rich Low_complexity Low_complexity 2 40 0 4 1277 261 0 0 0 chr12 90808005 90808034 -30449496 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1277 701 135 0 0 chr12 90808167 90808278 -30449252 + URR1B DNA MER1_type 112 222 -3 4 1277 297 0 0 0 chr12 90808927 90808960 -30448570 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1277 252 244 71 82 chr12 90810248 90810333 -30447197 - MLT1N2 LTR MaLR -407 155 72 4 1277 245 336 139 38 chr12 90810414 90810652 -30446878 + MIRb SINE MIR 1 262 -6 4 1277 271 299 18 61 chr12 90812054 90812168 -30445362 + MIRb SINE MIR 37 145 -123 4 1277 280 281 20 20 chr12 90812223 90812321 -30445209 - PB1D10 SINE Alu -7 110 13 4 1277 192 154 0 57 chr12 90812444 90812497 -30445033 - MIR SINE MIR -195 81 36 4 1277 625 318 1 48 chr12 90812661 90812869 -30444661 + B3A SINE B2 28 214 -2 4 1277 399 41 0 0 chr12 90814000 90814049 -30443481 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1277 938 132 95 6 chr12 90814095 90814263 -30443267 - B2_Mm2 SINE B2 -11 184 2 4 1277 303 312 13 0 chr12 90814456 90814533 -30442997 - B4A SINE B4 -209 83 6 4 1277 418 330 31 36 chr12 90814869 90815064 -30442466 - MER20 DNA MER1_type -21 198 5 4 1277 638 25 0 12 chr12 90815412 90815493 -30442037 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 4 1277 900 233 69 0 chr12 90815570 90815772 -30441758 - B3 SINE B2 0 216 1 4 1277 1186 122 33 6 chr12 90816337 90816519 -30441011 + B2_Mm2 SINE B2 1 187 -8 4 1277 676 309 40 23 chr12 90816739 90817041 -30440489 + LTR90B LTR LTR 94 400 -396 4 1277 344 181 0 0 chr12 90817182 90817254 -30440276 + L1_Mus3 LINE L1 6561 6632 -6 4 1277 2150 70 102 10 chr12 90817529 90817833 -30439697 + IAPEY3_LTR LTR ERVK 1 332 0 4 1277 269 287 92 34 chr12 90818345 90818464 -30439066 + MIRb SINE MIR 60 185 -83 4 1277 239 351 52 15 chr12 90818544 90818680 -30438850 + L2b LINE L2 3019 3159 -216 4 1277 288 140 0 106 chr12 90818741 90818845 -30438685 + RMER17C LTR ERVK 172 264 -146 4 1277 225 59 38 38 chr12 90820005 90820058 -30437472 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 4 1277 697 280 0 32 chr12 90820555 90820743 -30436787 + B3A SINE B2 1 182 -16 4 1277 26 74 0 0 chr12 90821902 90821956 -30435574 + AT_rich Low_complexity Low_complexity 1 54 0 4 1277 594 236 37 11 chr12 90821958 90822146 -30435384 - Lx5 LINE L1 -8 7042 6850 4 1277 246 39 0 38 chr12 90822840 90822893 -30434637 + L1Md_F2 LINE L1 6532 6582 0 4 1277 28 0 0 0 chr12 90822918 90822946 -30434584 + AT_rich Low_complexity Low_complexity 1 28 0 4 1277 189 107 0 0 chr12 90822948 90822976 -30434554 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1277 1012 225 14 0 chr12 90823353 90823575 -30433955 - URR1A DNA MER1_type 0 226 2 4 1277 223 350 47 40 chr12 90825867 90826016 -30431514 - MIRb SINE MIR -118 150 1 4 1277 198 0 0 0 chr12 90826364 90826386 -30431144 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1277 198 291 152 0 chr12 90826905 90826984 -30430546 + MIRb SINE MIR 120 210 -58 4 1277 195 226 77 0 chr12 90828090 90828180 -30429350 - MIRb SINE MIR -111 157 55 4 1277 591 112 0 0 chr12 90828264 90828353 -30429177 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 4 1277 545 286 61 18 chr12 90829533 90829697 -30427833 - MER20 DNA MER1_type -4 215 45 4 1277 217 302 50 95 chr12 90829882 90830061 -30427469 + MIRb SINE MIR 83 253 -15 4 1277 613 167 6 44 chr12 90830188 90830370 -30427160 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 1277 201 143 48 0 chr12 90830788 90830830 -30426700 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 4 159 1346 258 55 53 chr12 90832739 90833136 -30424394 - MTD LTR MaLR -12 407 10 4 1278 456 104 0 0 chr12 90833149 90833216 -30424314 + (CATA)n Simple_repeat Simple_repeat 2 68 0 4 1278 376 345 11 35 chr12 90833231 90833331 -30424199 + L1MC LINE L1 5071 5167 -979 4 1278 940 173 116 24 chr12 90833331 90833538 -30423992 + URR1A DNA MER1_type 1 226 0 4 1278 376 345 11 35 chr12 90833538 90833611 -30423919 + L1MC LINE L1 5168 5240 -906 4 1278 36491 11 0 7 chr12 90833665 90839042 -30418488 + L1Md_A LINE L1 252 5586 -297 4 1278 8853 14 0 0 chr12 90839042 90840038 -30417492 + L1Md_A LINE L1 5587 6582 0 4 1278 345 247 151 0 chr12 90840065 90840231 -30417299 + L1ME3 LINE L1 5296 5486 -676 4 1278 390 101 0 0 chr12 90840367 90840436 -30417094 + (T)n Simple_repeat Simple_repeat 1 69 0 4 1278 369 307 42 10 chr12 90840673 90840905 -30416625 + L1ME3 LINE L1 5903 6146 -298 4 1278 481 260 24 8 chr12 90842023 90842147 -30415383 + RMER30 DNA MER1_type 39 164 -38 4 1278 191 317 46 37 chr12 90842171 90842279 -30415251 - MIR SINE MIR -118 144 36 4 1278 198 167 0 0 chr12 90843459 90843495 -30414035 + T-rich Low_complexity Low_complexity 1 36 0 4 1278 203 382 68 8 chr12 90844018 90844150 -30413380 - MIRb SINE MIR -8 260 121 4 1278 821 186 21 0 chr12 90845600 90845740 -30411790 + B1_Mus1 SINE Alu 6 148 0 4 1278 348 254 33 174 chr12 90845810 90846080 -30411450 - MTEb LTR MaLR -8 371 97 4 1278 374 250 14 35 chr12 90846176 90846321 -30411209 + (TG)n Simple_repeat Simple_repeat 2 143 0 4 1278 575 251 65 87 chr12 90846364 90846593 -30410937 - B4A SINE B4 -56 236 2 4 1278 1032 90 0 0 chr12 90848555 90848700 -30408830 + (TTCC)n Simple_repeat Simple_repeat 4 148 0 4 1278 233 111 37 0 chr12 90848709 90848763 -30408767 + (TCTCTG)n Simple_repeat Simple_repeat 4 59 0 4 1278 192 97 0 0 chr12 90849374 90849405 -30408125 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 4 1278 207 0 0 0 chr12 90849479 90849502 -30408028 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1278 416 35 0 17 chr12 90849502 90849561 -30407969 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1278 624 74 0 0 chr12 90850529 90850624 -30406906 + (TC)n Simple_repeat Simple_repeat 2 96 0 4 1278 226 268 92 41 chr12 90850836 90850969 -30406561 + MIR SINE MIR 92 226 -50 4 1278 401 116 0 14 chr12 90851297 90851367 -30406163 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1278 22 35 0 0 chr12 90852545 90852574 -30404956 + AT_rich Low_complexity Low_complexity 1 29 0 5 1278 25 0 0 0 chr12 90852811 90852836 -30404694 + AT_rich Low_complexity Low_complexity 1 25 0 5 1278 207 100 0 0 chr12 90853471 90853501 -30404029 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 5 1278 1855 194 37 27 chr12 90853954 90854054 -30403476 + ORR1C2 LTR MaLR 1 100 -284 5 1278 2137 147 88 6 chr12 90854054 90854416 -30403114 + ORR1B1 LTR MaLR 1 392 -2 5 1278 1855 194 37 27 chr12 90854416 90854690 -30402840 + ORR1C2 LTR MaLR 101 379 -5 5 1278 180 0 0 0 chr12 90854896 90854916 -30402614 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1278 754 185 14 7 chr12 90855166 90855313 -30402217 - B1_Mur3 SINE Alu 0 149 2 5 1278 1527 242 54 30 chr12 90855323 90855728 -30401802 - MTD LTR MaLR 0 419 5 5 1278 502 323 150 26 chr12 90855939 90856285 -30401245 - MLT1C LTR MaLR -78 389 1 5 1278 236 273 51 25 chr12 90856429 90856508 -30401022 + ZP3AR Satellite Satellite 14 94 -118 5 1278 539 265 12 21 chr12 90856619 90856762 -30400768 + ID_B1 SINE B4 78 216 -8 5 1278 1016 260 51 128 chr12 90856801 90856867 -30400663 - ORR1E LTR MaLR 0 359 303 5 1278 2591 62 19 63 chr12 90856867 90857246 -30400284 + L1_Mus2 LINE L1 6195 6556 -10 5 1278 978 9 0 0 chr12 90857248 90857359 -30400171 + (GAA)n Simple_repeat Simple_repeat 2 112 0 5 1278 1016 260 51 128 chr12 90857359 90857678 -30399852 - ORR1E LTR MaLR -57 302 1 5 1278 1094 183 32 0 chr12 90859147 90859366 -30398164 + URR1A DNA MER1_type 1 226 0 5 1278 227 229 135 54 chr12 90859562 90859636 -30397894 - ORR1E LTR MaLR -10 349 270 5 1278 422 250 67 0 chr12 90860047 90860151 -30397379 + B1F SINE Alu 39 149 0 5 1278 438 297 93 88 chr12 90860965 90861330 -30396200 - RMER17C LTR ERVK -34 376 10 5 1278 369 0 0 0 chr12 90862050 90862091 -30395439 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1278 386 343 0 10 chr12 90862265 90862368 -30395162 + RSINE1 SINE B4 50 151 -14 5 1278 33 25 0 0 chr12 90862377 90862417 -30395113 + AT_rich Low_complexity Low_complexity 1 40 0 5 1278 266 324 17 75 chr12 90863852 90863972 -30393558 - PB1D10 SINE Alu 0 117 5 5 1278 797 344 111 40 chr12 90864876 90865382 -30392148 - MLT1F2 LTR MaLR 0 560 19 5 1278 225 0 0 0 chr12 90865383 90865408 -30392122 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1278 193 57 57 0 chr12 90866151 90866186 -30391344 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1278 324 292 11 0 chr12 90867396 90867485 -30390045 + MIR3 SINE MIR 119 208 0 5 1278 207 0 0 0 chr12 90868111 90868134 -30389396 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1278 189 0 0 0 chr12 90868134 90868154 -30389376 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1278 3737 145 0 9 chr12 90869703 90870385 -30387145 - L1_Mur1 LINE L1 -2002 3884 3209 5 1278 257 169 17 0 chr12 90870511 90870570 -30386960 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 5 1278 201 279 15 0 chr12 90870603 90870671 -30386859 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1278 506 313 11 38 chr12 90870795 90870981 -30386549 - B3A SINE B2 -16 182 2 5 1278 403 337 0 11 chr12 90871099 90871279 -30386251 + (TATG)n Simple_repeat Simple_repeat 1 178 0 5 1278 377 189 11 0 chr12 90871288 90871378 -30386152 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 1278 208 91 22 22 chr12 90872322 90872367 -30385163 + (TTTTTA)n Simple_repeat Simple_repeat 3 47 0 5 1278 338 332 202 33 chr12 90874442 90874685 -30382845 + B4A SINE B4 7 290 -2 5 1278 185 316 50 50 chr12 90874831 90874911 -30382619 - MIRm SINE MIR -195 81 2 5 1278 538 307 110 7 chr12 90876364 90876518 -30381012 + B3A SINE B2 2 171 -27 5 1278 1023 156 0 0 chr12 90877300 90877479 -30380051 + GA-rich Low_complexity Low_complexity 2 180 0 5 1278 213 65 0 0 chr12 90877479 90877510 -30380020 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 5 1278 2011 41 12 0 chr12 90877852 90878097 -30379433 - L1_Mus1 LINE L1 0 6567 6320 5 1278 403 299 109 76 chr12 90878375 90878745 -30378785 - ORR1E LTR MaLR 0 370 1 5 1278 950 80 7 0 chr12 90879107 90879244 -30378286 + (GAAA)n Simple_repeat Simple_repeat 1 138 0 5 1278 210 91 0 0 chr12 90880802 90880835 -30376695 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1278 528 93 0 0 chr12 90881020 90881095 -30376435 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1278 4611 58 11 0 chr12 90881491 90882278 -30375252 - L1Md_F2 LINE L1 -371 6211 5414 5 1278 2521 100 8 48 chr12 90882278 90882677 -30374853 + L1Md_F2 LINE L1 6200 6582 0 5 1278 197 108 0 26 chr12 90882745 90882783 -30374747 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1278 2518 91 49 54 chr12 90882791 90883197 -30374333 - L1_Mus2 LINE L1 -2 6564 6161 5 1278 2625 57 6 14 chr12 90883197 90883321 -30374209 + L1_Mus2 LINE L1 5809 5932 -634 5 1278 2752 108 161 13 chr12 90883321 90883773 -30373757 - MURVY-LTR LTR ERV1 0 519 1 5 1278 2625 57 6 14 chr12 90883773 90884004 -30373526 + L1_Mus2 LINE L1 5933 6161 -405 5 1278 449 34 17 0 chr12 90884348 90884407 -30373123 + (TTCA)n Simple_repeat Simple_repeat 4 63 0 5 1278 180 196 83 42 chr12 90884622 90884670 -30372860 + L3 LINE CR1 2130 2179 -2310 5 1278 210 143 0 0 chr12 90885306 90885341 -30372189 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1278 2443 60 0 9 chr12 90885482 90885803 -30371727 + L1Md_F3 LINE L1 6267 6584 0 5 1278 482 273 137 16 chr12 90886133 90886167 -30371363 - B3 SINE B2 0 216 182 5 1278 195 100 0 0 chr12 90886167 90886197 -30371333 + (TATG)n Simple_repeat Simple_repeat 1 30 0 5 1278 482 273 137 16 chr12 90886197 90886352 -30371178 - B3 SINE B2 -35 181 5 5 1278 1208 292 181 24 chr12 90886375 90886828 -30370702 - Lx8 LINE L1 0 7473 6956 5 1278 426 20 0 0 chr12 90886828 90886879 -30370651 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1278 1208 292 181 24 chr12 90886879 90887166 -30370364 - Lx8 LINE L1 -518 6955 6618 5 1278 632 224 21 7 chr12 90887343 90887487 -30370043 + B1_Mur2 SINE Alu 1 146 -3 5 1278 339 113 0 0 chr12 90887531 90887584 -30369946 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1278 222 192 52 52 chr12 90887771 90887848 -30369682 + (CCTTG)n Simple_repeat Simple_repeat 4 80 0 5 1278 787 297 52 8 chr12 90888787 90889055 -30368475 + B4 SINE B4 1 280 -12 5 1278 302 156 167 0 chr12 90893180 90893270 -30364260 - L1MA5A LINE L1 -339 5958 5854 5 1278 378 0 0 0 chr12 90893572 90893614 -30363916 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1278 347 0 23 0 chr12 90893893 90893936 -30363594 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 1278 733 324 39 122 chr12 90894424 90894891 -30362639 + MLT1C LTR MaLR 4 431 -36 5 1278 441 0 0 0 chr12 90895114 90895163 -30362367 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1278 471 265 90 103 chr12 90895177 90895195 -30362335 + MTE2a LTR MaLR 121 138 -241 5 1278 3354 38 5 0 chr12 90895195 90895589 -30361941 - MTA_Mm LTR MaLR 0 396 1 5 1278 471 265 90 103 chr12 90895589 90895793 -30361737 + MTE2a LTR MaLR 139 340 -39 5 1278 316 325 141 28 chr12 90896722 90897013 -30360517 - L2 LINE L2 -812 2607 2284 5 1278 657 86 0 0 chr12 90897304 90897397 -30360133 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1278 279 233 0 0 chr12 90897450 90897553 -30359977 + (CA)n Simple_repeat Simple_repeat 2 104 0 5 1278 835 340 58 25 chr12 90897749 90898108 -30359422 + MTE2b LTR MaLR 9 379 0 5 1278 387 0 0 0 chr12 90898194 90898237 -30359293 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 5 1278 618 290 70 46 chr12 90899779 90900064 -30357466 + RMER13A LTR ERVK 103 394 -466 5 1278 697 305 11 17 chr12 90901226 90901406 -30356124 - B4A SINE B4 -113 179 1 5 1278 396 0 0 0 chr12 90901955 90901999 -30355531 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1278 191 146 24 0 chr12 90902374 90902415 -30355115 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1278 288 237 0 0 chr12 90902830 90902889 -30354641 - ORR1D2 LTR MaLR 0 370 312 5 1278 979 137 7 0 chr12 90902914 90903067 -30354463 + URR1B DNA MER1_type 72 225 0 5 1278 884 262 15 10 chr12 90903126 90903330 -30354200 - ORR1D2 LTR MaLR -165 205 1 5 1278 243 0 0 0 chr12 90903958 90903985 -30353545 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1278 1246 51 0 0 chr12 90904633 90904790 -30352740 - L1Md_T LINE L1 0 6582 6426 5 1278 236 345 79 35 chr12 90904936 90905050 -30352480 + L2a LINE L2 3306 3424 -2 5 1278 414 100 0 0 chr12 90905153 90905213 -30352317 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 5 1278 5954 177 30 30 chr12 90905381 90906569 -30350961 + Lx5 LINE L1 5861 7048 -2 5 1278 21 0 0 0 chr12 90907194 90907215 -30350315 + AT_rich Low_complexity Low_complexity 1 21 0 5 1278 549 273 11 188 chr12 90907939 90908291 -30349239 + B4A SINE B4 3 292 0 5 1278 239 224 0 0 chr12 90908291 90908340 -30349190 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1278 416 230 51 36 chr12 90908408 90908557 -30348973 - B3 SINE B2 -7 188 44 5 1278 337 358 111 28 chr12 90908736 90908917 -30348613 - MER20 DNA MER1_type -23 196 1 5 1278 397 342 25 12 chr12 90909436 90909599 -30347931 - MER5A DNA MER1_type -22 167 3 5 1278 234 293 64 39 chr12 90909718 90909796 -30347734 + MER20 DNA MER1_type 1 80 -139 5 1278 292 333 0 36 chr12 90909838 90909922 -30347608 + MER20B DNA MER1_type 92 172 -611 5 1278 198 312 34 41 chr12 90909999 90910146 -30347384 + L2 LINE L2 2256 2401 -1018 5 1278 804 272 44 36 chr12 90910806 90911081 -30346449 + B4 SINE B4 2 278 -14 5 1278 201 74 0 0 chr12 90912485 90912512 -30345018 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 5 1278 930 98 45 0 chr12 90912629 90912761 -30344769 + B1_Mus2 SINE Alu 1 138 -9 5 1278 243 0 0 0 chr12 90912762 90912789 -30344741 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1278 457 266 11 11 chr12 90914164 90914259 -30343271 - B1_Mur1 SINE Alu -22 127 33 5 1278 318 306 141 7 chr12 90916186 90916321 -30341209 - Tigger6a DNA MER2_type -621 462 310 5 1278 367 344 113 0 chr12 90916388 90916583 -30340947 - Tigger6a DNA MER2_type -866 217 1 5 1278 202 327 19 38 chr12 90917224 90917329 -30340201 + MIRc SINE MIR 2 104 -164 6 1278 279 0 0 0 chr12 90917662 90917693 -30339837 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 1278 181 347 24 48 chr12 90918113 90918237 -30339293 - L2c LINE L2 -8 3379 3259 6 1278 337 288 0 0 chr12 90919879 90919952 -30337578 + RSINE1 SINE B4 2 74 -91 6 1278 486 0 0 0 chr12 90919955 90920009 -30337521 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1278 909 166 166 0 chr12 90920321 90920514 -30337016 + URR1B DNA MER1_type 1 225 0 6 1278 364 268 0 10 chr12 90921025 90921123 -30336407 + Charlie5 DNA MER1_type 26 122 -2502 6 1278 427 250 46 33 chr12 90921115 90921268 -30336262 + Charlie5 DNA MER1_type 2228 2382 -242 6 1278 1198 112 0 6 chr12 90921283 90921454 -30336076 + B2_Mm2 SINE B2 2 171 -24 6 1278 692 144 0 0 chr12 90921584 90921688 -30335842 - B1_Mur3 SINE Alu -13 136 33 6 1278 248 308 51 0 chr12 90921911 90921989 -30335541 - LTR16A LTR ERVL 0 451 370 6 1278 201 294 15 0 chr12 90922356 90922424 -30335106 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1278 740 379 18 4 chr12 90922427 90922708 -30334822 - B4A SINE B4 -2 290 6 6 1278 1356 297 30 16 chr12 90923248 90923618 -30333912 - MTE2b LTR MaLR -4 375 1 6 1278 192 309 11 56 chr12 90924463 90924552 -30332978 - MIRc SINE MIR -74 194 110 6 1278 759 330 102 14 chr12 90925438 90925930 -30331600 - Lx8 LINE L1 -253 7220 6686 6 1278 215 392 53 8 chr12 90926235 90926366 -30331164 - MIRb SINE MIR -129 139 3 6 1278 25 65 0 0 chr12 90928471 90928517 -30329013 + AT_rich Low_complexity Low_complexity 1 46 0 6 1278 587 301 89 34 chr12 90928517 90928809 -30328721 - Lx8 LINE L1 -2 7471 7164 6 1278 234 127 42 0 chr12 90929543 90929614 -30327916 + T-rich Low_complexity Low_complexity 2 75 0 6 1278 696 319 75 49 chr12 90931247 90931596 -30325934 - MT2A LTR ERVL -7 526 169 6 1278 260 331 27 33 chr12 90932148 90932332 -30325198 - MIRc SINE MIR -66 202 20 6 1278 603 0 0 0 chr12 90932524 90932591 -30324939 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1278 323 254 8 48 chr12 90934350 90934474 -30323056 + CT-rich Low_complexity Low_complexity 2 120 0 6 1278 405 303 40 0 chr12 90936086 90936185 -30321345 + B1_Mur1 SINE Alu 15 117 -32 6 1278 672 296 40 0 chr12 90936218 90936417 -30321113 + ID_B1 SINE B4 2 208 -16 6 1278 837 56 0 0 chr12 90936446 90936553 -30320977 + (GA)n Simple_repeat Simple_repeat 2 108 0 6 1278 219 273 0 0 chr12 90936556 90936600 -30320930 - MIR SINE MIR -207 55 12 6 1278 1276 230 43 62 chr12 90937073 90937425 -30320105 - RMER6C LTR ERVK 0 690 346 6 1278 486 193 0 0 chr12 90937493 90937576 -30319954 - MT2B LTR ERVL -338 263 181 6 1278 241 179 0 0 chr12 90937586 90937625 -30319905 - RMER6C LTR ERVK -681 39 1 6 1278 211 184 0 0 chr12 90938645 90938683 -30318847 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1278 347 305 134 29 chr12 90938688 90938880 -30318650 - B4A SINE B4 0 292 69 6 1278 411 21 0 0 chr12 90938880 90938928 -30318602 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1278 341 324 163 62 chr12 90938928 90938992 -30318538 - B4 SINE B4 -224 68 10 6 1278 200 342 44 50 chr12 90939550 90939710 -30317820 - L2b LINE L2 -239 3136 2978 6 1278 271 300 10 29 chr12 90939829 90939932 -30317598 + CT-rich Low_complexity Low_complexity 2 102 0 6 1278 225 0 0 0 chr12 90939936 90939961 -30317569 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 6 1278 781 131 61 15 chr12 90939964 90940096 -30317434 - B1_Mus1 SINE Alu -6 142 5 6 1278 240 35 0 0 chr12 90940570 90940599 -30316931 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1278 1133 285 96 12 chr12 90940759 90941093 -30316437 - ORR1D2 LTR MaLR -8 362 1 6 1278 242 250 34 0 chr12 90942247 90942335 -30315195 - L1MA7 LINE L1 -2 6289 6199 6 1278 420 20 0 0 chr12 90942513 90942562 -30314968 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1278 204 122 0 0 chr12 90943659 90943700 -30313830 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1278 271 329 24 0 chr12 90943836 90943918 -30313612 + MER91C DNA Tip100 53 136 -4 6 1278 286 281 83 0 chr12 90944262 90944358 -30313172 + MIRc SINE MIR 104 207 -61 6 1278 477 284 59 77 chr12 90945142 90945363 -30312167 - MER113 DNA MER1_type -95 426 210 6 1278 242 152 0 17 chr12 90946144 90946204 -30311326 + A-rich Low_complexity Low_complexity 3 61 0 6 1278 403 301 64 29 chr12 90946445 90946585 -30310945 + B1F2 SINE Alu 5 149 0 6 1278 296 307 147 16 chr12 90946677 90946806 -30310724 - MER20 DNA MER1_type -5 214 69 6 1278 184 267 15 77 chr12 90946990 90947055 -30310475 + L3 LINE CR1 3184 3244 -1245 6 1278 1313 67 0 11 chr12 90948479 90948661 -30308869 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1278 897 110 0 0 chr12 90948661 90948797 -30308733 + (TCC)n Simple_repeat Simple_repeat 3 138 0 6 1278 1871 167 0 6 chr12 90949673 90949986 -30307544 - RLTR10E LTR ERVK 0 311 1 6 1278 247 314 21 28 chr12 90950786 90950927 -30306603 + CT-rich Low_complexity Low_complexity 3 142 0 6 1278 351 0 0 0 chr12 90952940 90952979 -30304551 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1278 330 296 45 27 chr12 90953011 90953041 -30304489 - B4A SINE B4 -37 255 229 6 1278 417 39 0 0 chr12 90953041 90953092 -30304438 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 6 1278 330 296 45 27 chr12 90953092 90953172 -30304358 - B4A SINE B4 -64 228 144 6 1278 195 42 0 0 chr12 90954487 90954511 -30303019 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 6 1278 221 327 0 0 chr12 90954680 90954732 -30302798 + ID4_ SINE ID 17 68 -15 6 1278 1186 245 147 0 chr12 90955936 90956262 -30301268 - ORR1D1 LTR MaLR 0 374 1 6 1278 575 345 146 34 chr12 90956998 90957355 -30300175 - MTC LTR MaLR -15 406 10 6 1278 189 132 0 0 chr12 90957402 90957440 -30300090 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1278 216 111 0 0 chr12 90958361 90958397 -30299133 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1278 183 184 0 0 chr12 90958529 90958567 -30298963 + GA-rich Low_complexity Low_complexity 4 41 0 6 1278 338 394 49 16 chr12 90958942 90959187 -30298343 + L1M5 LINE L1 4768 5020 -1126 6 1278 217 200 22 0 chr12 90959281 90959326 -30298204 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1278 815 241 54 20 chr12 90962251 90962454 -30295076 - B3 SINE B2 -6 210 1 6 1278 378 0 0 0 chr12 90962951 90962993 -30294537 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 159 351 0 0 0 chr12 90963945 90963984 -30293546 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1279 576 42 0 0 chr12 90964505 90964576 -30292954 + (TA)n Simple_repeat Simple_repeat 2 72 0 6 1279 1183 141 10 20 chr12 90964624 90964820 -30292710 - URR1B DNA MER1_type 0 225 32 6 1279 678 296 56 56 chr12 90964832 90964982 -30292548 - B4A SINE B4 -90 202 52 6 1279 2265 120 3 12 chr12 90964982 90965312 -30292218 - ORR1A2 LTR MaLR 0 327 1 6 1279 678 296 56 56 chr12 90965312 90965358 -30292172 - B4A SINE B4 -241 51 6 6 1279 348 302 9 45 chr12 90966043 90966154 -30291376 + MER5A DNA MER1_type 69 175 -14 6 1279 22 0 0 0 chr12 90966445 90966467 -30291063 + AT_rich Low_complexity Low_complexity 1 22 0 6 1279 185 178 32 43 chr12 90967426 90967520 -30290010 + GA-rich Low_complexity Low_complexity 2 94 0 6 1279 375 154 0 0 chr12 90968788 90968853 -30288677 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1279 22 0 0 0 chr12 90969525 90969547 -30287983 + AT_rich Low_complexity Low_complexity 1 22 0 6 1279 386 279 24 27 chr12 90970317 90970438 -30287092 + PB1D10 SINE Alu 14 132 -17 6 1279 318 347 0 39 chr12 90971682 90971811 -30285719 - MIRb SINE MIR -44 224 101 6 1279 372 43 0 0 chr12 90972164 90972210 -30285320 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1279 2456 235 62 4 chr12 90973640 90974200 -30283330 + Lx9 LINE L1 6306 6898 -746 6 1279 600 371 48 18 chr12 90975543 90975815 -30281715 + B4A SINE B4 2 281 -11 6 1279 1256 170 13 5 chr12 90977340 90977564 -30279966 - URR1A DNA MER1_type 0 226 1 6 1279 1499 172 134 37 chr12 90980875 90981032 -30276498 + ORR1C2 LTR MaLR 1 174 -210 6 1279 597 64 0 0 chr12 90981032 90981110 -30276420 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1279 1499 172 134 37 chr12 90981110 90981302 -30276228 + ORR1C2 LTR MaLR 175 384 0 6 1279 4305 243 97 43 chr12 90981304 90982227 -30275303 + ORR1C2-int LTR MaLR 3 1002 -368 6 1279 4125 50 0 0 chr12 90982227 90982732 -30274798 + L1Md_F2 LINE L1 6078 6582 0 6 1279 4305 243 97 43 chr12 90982732 90983102 -30274428 + ORR1C2-int LTR MaLR 1003 1364 -6 6 1279 1929 155 36 107 chr12 90983104 90983515 -30274015 + ORR1C2 LTR MaLR 1 382 -2 6 1279 23 0 0 0 chr12 90983542 90983565 -30273965 + AT_rich Low_complexity Low_complexity 1 23 0 6 1279 184 371 0 0 chr12 90983568 90983630 -30273900 + MIRm SINE MIR 196 257 -19 6 1279 309 162 0 0 chr12 90986471 90986539 -30270991 + (CTA)n Simple_repeat Simple_repeat 3 70 0 6 1279 326 308 134 30 chr12 90987011 90987175 -30270355 - MIR SINE MIR -34 228 48 6 1279 269 288 115 18 chr12 90987528 90987641 -30269889 - L3 LINE CR1 -847 3642 3519 6 1279 411 339 108 31 chr12 90988007 90988202 -30269328 - MER63A DNA AcHobo 0 210 1 6 1279 1211 182 157 3 chr12 90989086 90989403 -30268127 + MTC LTR MaLR 5 413 -8 6 1279 492 18 0 0 chr12 90990253 90990310 -30267220 + (TTC)n Simple_repeat Simple_repeat 1 57 0 6 1279 495 107 0 0 chr12 90991274 90991349 -30266181 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 1279 419 255 62 18 chr12 90991875 90991987 -30265543 - ID_B1 SINE B4 -9 215 99 6 1279 243 0 0 0 chr12 90992422 90992449 -30265081 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1279 556 137 16 33 chr12 90992681 90992802 -30264728 + Lx3C LINE L1 6856 6974 -2 6 1279 691 330 57 0 chr12 90992939 90993133 -30264397 - MLT1G LTR MaLR -76 515 311 6 1279 2320 213 60 57 chr12 90993483 90993802 -30263728 + Lx7 LINE L1 7009 7324 -372 6 1279 216 97 0 0 chr12 90993802 90993833 -30263697 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1279 2320 213 60 57 chr12 90993833 90994199 -30263331 + Lx7 LINE L1 7325 7696 0 6 1279 252 379 43 0 chr12 90994558 90994674 -30262856 - MER5B DNA MER1_type -51 127 7 7 1279 183 267 87 65 chr12 90995091 90995183 -30262347 + MIR SINE MIR 28 121 -141 7 1279 602 314 32 5 chr12 90995528 90995717 -30261813 - ID_B1 SINE B4 -30 194 1 7 1279 22 0 0 0 chr12 90995762 90995784 -30261746 + AT_rich Low_complexity Low_complexity 1 22 0 7 1279 613 212 150 46 chr12 90996484 90996637 -30260893 - B3 SINE B2 -3 213 45 7 1279 407 272 63 54 chr12 90997286 90997572 -30259958 - L1MC LINE L1 -2528 5467 5182 7 1279 887 274 20 81 chr12 90997760 90998154 -30259376 - L1_Rod LINE L1 -2560 3287 2918 7 1279 234 0 0 0 chr12 90998162 90998188 -30259342 + (TTA)n Simple_repeat Simple_repeat 2 27 0 7 1279 350 316 75 88 chr12 90999214 90999453 -30258077 + MLT1C LTR MaLR 62 297 -170 7 1279 1957 107 20 10 chr12 91000000 91000294 -30257236 + ORR1A4 LTR MaLR 33 329 0 1 1279 194 260 65 52 chr12 91002504 91002581 -30254949 - MIR3 SINE MIR -33 175 98 2 1279 721 86 62 35 chr12 91003891 91004220 -30253310 - L1_Mus3 LINE L1 0 6638 6488 3 1279 579 237 8 0 chr12 91004405 91004523 -30253007 - B1F SINE Alu -5 144 26 4 1279 229 269 84 84 chr12 91004465 91004656 -30252874 - MT2B2 LTR ERVL -345 239 49 5 1279 429 263 14 43 chr12 91004523 91004543 -30252987 - ID_B1 SINE B4 -4 219 86 6 1279 321 47 0 0 chr12 91004934 91004977 -30252553 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 7 1279 251 278 86 51 chr12 91005669 91005866 -30251664 + Lx8 LINE L1 7197 7400 -73 8 1279 197 86 57 0 chr12 91007112 91007147 -30250383 + (TCTCCC)n Simple_repeat Simple_repeat 6 42 0 9 1279 204 217 0 0 chr12 91007146 91007192 -30250338 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1279 459 279 26 33 chr12 91007209 91007361 -30250169 - RSINE1 SINE B4 -11 154 4 1 1279 994 214 67 0 chr12 91007468 91007692 -30249838 + RLTR42 LTR ERVK 1 239 0 1 1279 465 252 28 97 chr12 91007692 91007868 -30249662 + RLTR42-int LTR ERVK 1 164 -5358 1 1279 362 325 0 0 chr12 91008891 91009005 -30248525 - MER103 DNA DNA -46 120 7 1 1279 280 314 153 15 chr12 91009537 91009870 -30247660 - Lx8 LINE L1 -2 7471 7093 1 1279 474 65 0 0 chr12 91010702 91010764 -30246766 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1279 180 0 0 0 chr12 91011266 91011286 -30246244 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1279 1832 142 29 76 chr12 91012108 91012450 -30245080 - ORR1A3 LTR MaLR 0 326 1 1 1279 256 266 55 37 chr12 91012475 91012582 -30244948 + MIRm SINE MIR 77 189 -87 1 1279 295 340 39 0 chr12 91012725 91012828 -30244702 + MER45R DNA Tip100 1 107 -1474 1 1279 218 344 37 61 chr12 91013559 91013723 -30243807 - L2c LINE L2 -226 3161 3002 2 1279 234 0 0 0 chr12 91015157 91015183 -30242347 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1279 741 285 19 99 chr12 91015414 91015726 -30241804 - MTEb LTR MaLR 0 379 93 2 1279 1143 142 23 47 chr12 91015906 91016120 -30241410 + URR1A DNA MER1_type 16 224 -2 2 1279 226 334 70 62 chr12 91016771 91017016 -30240514 - L2c LINE L2 -3 3423 3153 2 1279 324 261 17 17 chr12 91018658 91018775 -30238755 + GA-rich Low_complexity Low_complexity 1 117 0 2 1279 2378 192 58 63 chr12 91019090 91019784 -30237746 - RMER6C LTR ERVK 0 690 1 2 1279 963 272 140 3 chr12 91020447 91020812 -30236718 - MTD LTR MaLR 0 419 5 2 1279 423 0 0 0 chr12 91020840 91020887 -30236643 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1279 881 321 21 31 chr12 91021560 91021846 -30235684 + B4A SINE B4 8 290 -2 2 1279 231 308 21 76 chr12 91021848 91021992 -30235538 - RMER12 LTR ERVK -476 846 711 3 1279 282 143 0 0 chr12 91022733 91022782 -30234748 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1279 198 188 188 0 chr12 91023372 91023420 -30234110 - L2 LINE L2 -542 2877 2821 3 1279 657 309 33 14 chr12 91026085 91026361 -30231169 + Lx9 LINE L1 7177 7457 -187 3 1279 368 125 16 0 chr12 91026688 91026752 -30230778 + (TCTCC)n Simple_repeat Simple_repeat 2 66 0 3 1279 1064 289 32 26 chr12 91026926 91027303 -30230227 + MTE2a LTR MaLR 1 379 0 3 1279 894 221 5 22 chr12 91027918 91028103 -30229427 + RMER1C Other Other 858 1039 -303 3 1279 3125 119 85 6 chr12 91028133 91028625 -30228905 - Lx4A LINE L1 -4 7054 6524 3 1279 1031 220 50 23 chr12 91028625 91028927 -30228603 + RMER1C Other Other 1032 1341 -1 3 1279 1153 112 5 83 chr12 91029240 91029445 -30228085 - B2_Mm2 SINE B2 -5 190 2 3 1279 256 267 48 0 chr12 91029490 91029595 -30227935 + (TCTCTG)n Simple_repeat Simple_repeat 5 114 0 3 1279 395 192 0 23 chr12 91030640 91030768 -30226762 + (TGG)n Simple_repeat Simple_repeat 1 125 0 4 1279 222 91 0 0 chr12 91032207 91032240 -30225290 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1279 375 23 0 0 chr12 91032803 91032847 -30224683 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1279 852 299 27 72 chr12 91032914 91033206 -30224324 - B4A SINE B4 -12 280 2 4 1279 229 164 12 99 chr12 91035681 91035762 -30221768 + Charlie4 DNA MER1_type 1512 1585 -376 4 1279 185 314 81 11 chr12 91035867 91035954 -30221576 + MIR3 SINE MIR 109 201 -7 4 1279 402 274 93 89 chr12 91036381 91036638 -30220892 - MLT1B LTR MaLR -94 296 39 4 1279 2812 41 23 116 chr12 91037594 91038035 -30219495 + MTB LTR MaLR 1 400 0 4 1279 7201 80 24 70 chr12 91038035 91039185 -30218345 + MTB-int LTR MaLR 1 1098 0 4 1279 2670 62 87 0 chr12 91039185 91039553 -30217977 + MTB LTR MaLR 1 400 0 4 1279 861 278 59 39 chr12 91039767 91040022 -30217508 + B4A SINE B4 24 283 -9 4 1279 243 0 0 0 chr12 91040048 91040075 -30217455 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1279 893 166 0 27 chr12 91040916 91041065 -30216465 - B1_Mus2 SINE Alu 0 147 3 5 1279 333 347 135 45 chr12 91041517 91041603 -30215927 - L1MEd LINE L1 -4876 1243 1143 5 1279 246 32 0 0 chr12 91041603 91041634 -30215896 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1279 333 347 135 45 chr12 91041634 91041991 -30215539 - L1MEd LINE L1 -4977 1142 761 5 1279 234 62 0 0 chr12 91042207 91042239 -30215291 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1279 477 0 0 0 chr12 91042329 91042382 -30215148 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1279 651 26 0 0 chr12 91042382 91042458 -30215072 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1279 504 0 0 0 chr12 91043974 91044030 -30213500 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1279 228 375 0 0 chr12 91044040 91044120 -30213410 - ID4_ SINE ID -2 81 2 5 1279 1500 171 93 48 chr12 91044911 91045224 -30212306 + ORR1A4 LTR MaLR 1 327 -2 5 1279 201 347 97 24 chr12 91046032 91046156 -30211374 - MIRb SINE MIR -11 257 125 5 1279 314 61 20 0 chr12 91046589 91046638 -30210892 + (TAA)n Simple_repeat Simple_repeat 1 50 0 6 1279 219 103 0 0 chr12 91047423 91047462 -30210068 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1279 250 329 119 24 chr12 91048969 91049137 -30208393 - MIRm SINE MIR 0 276 93 6 1279 519 17 0 0 chr12 91049636 91049696 -30207834 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 1279 371 21 0 20 chr12 91049696 91049744 -30207786 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1279 198 0 0 0 chr12 91051288 91051310 -30206220 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 6 1279 291 212 0 0 chr12 91051592 91051677 -30205853 + T-rich Low_complexity Low_complexity 1 85 0 6 1279 186 43 0 0 chr12 91053419 91053442 -30204088 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1279 622 143 17 0 chr12 91053488 91053607 -30203923 + GA-rich Low_complexity Low_complexity 2 122 0 6 1279 186 43 0 0 chr12 91054686 91054709 -30202821 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1279 608 315 50 72 chr12 91056288 91056609 -30200921 - MLT1B LTR MaLR -63 327 14 7 1279 471 18 0 0 chr12 91057016 91057072 -30200458 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1279 217 238 36 0 chr12 91057348 91057432 -30200098 + CT-rich Low_complexity Low_complexity 2 88 0 7 1279 424 350 80 5 chr12 91059047 91059271 -30198259 - MIRb SINE MIR -25 243 3 7 1279 276 30 0 0 chr12 91061257 91061290 -30196240 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1279 371 310 57 43 chr12 91064244 91064472 -30193058 - MIRc SINE MIR -19 249 13 7 1279 722 251 28 6 chr12 91065848 91066024 -30191506 + B3A SINE B2 2 181 -17 7 1279 356 237 161 31 chr12 91066727 91066888 -30190642 - MER53 DNA hAT -1 192 11 7 1279 462 362 101 34 chr12 91068904 91069290 -30188240 - MLT1H LTR MaLR 0 549 138 7 1279 180 0 0 0 chr12 91069595 91069615 -30187915 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1279 249 0 73 0 chr12 91070495 91070536 -30186994 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 1279 256 331 74 22 chr12 91070699 91070882 -30186648 - MIRb SINE MIR -15 253 53 8 1279 22 0 0 0 chr12 91071374 91071396 -30186134 + AT_rich Low_complexity Low_complexity 1 22 0 8 1279 275 0 0 28 chr12 91071412 91071448 -30186082 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1279 676 307 62 92 chr12 91072199 91072505 -30185025 - MER57F LTR ERV1 0 436 138 8 1279 252 0 0 0 chr12 91072505 91072533 -30184997 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 1279 676 307 62 92 chr12 91072533 91072674 -30184856 - MER57F LTR ERV1 -299 137 2 8 1279 236 30 0 29 chr12 91072932 91072966 -30184564 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 8 1279 207 0 0 0 chr12 91073251 91073274 -30184256 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1279 212 250 111 12 chr12 91074871 91074952 -30182578 - MIR SINE MIR -62 146 58 8 1279 822 289 45 49 chr12 91075068 91075315 -30182215 - MLT1F1 LTR MaLR -24 545 300 8 1279 344 345 98 16 chr12 91075466 91075722 -30181808 - MLT1B LTR MaLR -1 389 113 9 1279 831 170 0 0 chr12 91075872 91076025 -30181505 + (TA)n Simple_repeat Simple_repeat 2 154 0 9 1279 186 43 0 0 chr12 91077020 91077043 -30180487 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 9 1279 233 247 37 12 chr12 91078432 91078514 -30179016 + CT-rich Low_complexity Low_complexity 2 85 0 9 1279 621 332 124 43 chr12 91078609 91079005 -30178525 - MLT1C LTR MaLR -31 436 9 9 1279 253 251 66 87 chr12 91079061 91079257 -30178273 + Charlie7a DNA MER1_type 58 249 -23 9 1279 209 33 0 32 chr12 91084314 91084345 -30173185 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 9 1279 400 312 56 14 chr12 91084549 91084692 -30172838 - B1F SINE Alu 0 149 1 9 1279 612 282 51 41 chr12 91084692 91084771 -30172759 - ID SINE ID -141 83 3 9 1279 248 358 67 18 chr12 91086288 91086453 -30171077 - MIRb SINE MIR -2 266 94 9 1279 223 125 0 40 chr12 91088312 91088362 -30169168 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 1 1279 906 309 35 21 chr12 91088392 91088676 -30168854 - ORR1E LTR MaLR -71 288 1 1 1279 366 269 32 0 chr12 91088706 91088799 -30168731 - MER45B DNA Tip100 -536 504 409 1 1279 420 247 22 22 chr12 91088980 91089071 -30168459 + RSINE1 SINE B4 1 91 -74 1 1279 796 235 53 11 chr12 91089212 91089401 -30168129 - URR1B DNA MER1_type 0 225 29 1 1279 333 290 65 0 chr12 91089597 91089690 -30167840 - MER58A DNA MER1_type -124 100 2 1 1279 205 128 0 41 chr12 91090060 91090109 -30167421 + A-rich Low_complexity Low_complexity 2 48 0 1 1279 261 0 0 0 chr12 91090677 91090706 -30166824 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1279 307 284 5 83 chr12 91091141 91091259 -30166271 - B1F SINE Alu 0 149 10 1 1279 296 317 82 41 chr12 91092259 91092430 -30165100 + L2b LINE L2 3198 3375 0 1 1279 242 286 0 0 chr12 91092768 91092824 -30164706 + GA-rich Low_complexity Low_complexity 4 59 0 1 1279 198 398 43 0 chr12 91093977 91094070 -30163460 - L2 LINE L2 -346 3073 2977 1 1279 441 0 0 0 chr12 91094204 91094253 -30163277 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 159 410 79 16 0 chr12 91095004 91095067 -30162463 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1280 2185 112 91 19 chr12 91095111 91095483 -30162047 + Lx LINE L1 6253 6651 -3 1 1280 201 170 37 19 chr12 91095862 91095916 -30161614 + (TTATA)n Simple_repeat Simple_repeat 3 57 0 1 1280 732 43 0 0 chr12 91098680 91098772 -30158758 + (GA)n Simple_repeat Simple_repeat 2 93 0 1 1280 395 304 40 20 chr12 91098812 91098963 -30158567 + MIRb SINE MIR 64 217 -51 1 1280 346 308 49 43 chr12 91099698 91099861 -30157669 + MER5A1 DNA MER1_type 1 164 -2 1 1280 182 297 96 35 chr12 91099942 91100057 -30157473 + MIRb SINE MIR 93 214 -54 1 1280 363 263 17 32 chr12 91100994 91101128 -30156402 + MER5A DNA MER1_type 3 127 -62 1 1280 225 352 47 47 chr12 91102197 91102388 -30155142 - MLT1K LTR MaLR -3 592 402 1 1280 408 183 0 42 chr12 91102599 91102719 -30154811 + GA-rich Low_complexity Low_complexity 3 117 0 1 1280 215 313 30 0 chr12 91102915 91102982 -30154548 - MIRb SINE MIR -167 101 33 1 1280 211 416 35 38 chr12 91104205 91104495 -30153035 + L2b LINE L2 2603 2891 -528 1 1280 181 358 30 0 chr12 91104784 91104851 -30152679 + L2b LINE L2 3286 3354 -21 1 1280 245 89 22 0 chr12 91105606 91105651 -30151879 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1280 28 0 0 0 chr12 91105931 91105959 -30151571 + AT_rich Low_complexity Low_complexity 1 28 0 1 1280 408 55 0 0 chr12 91106584 91106639 -30150891 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1280 501 314 63 92 chr12 91106643 91107022 -30150508 + MLT1B LTR MaLR 23 390 0 1 1280 375 23 0 0 chr12 91107067 91107111 -30150419 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1280 408 272 28 11 chr12 91107137 91107319 -30150211 + Lx7 LINE L1 7512 7696 0 1 1280 256 325 124 23 chr12 91108121 91108250 -30149280 - MIRb SINE MIR -77 191 50 1 1280 839 249 18 18 chr12 91108417 91108646 -30148884 + Lx6 LINE L1 7206 7434 -26 1 1280 2439 279 74 25 chr12 91109002 91109962 -30147568 - Lx8 LINE L1 0 7473 6467 1 1280 315 49 0 0 chr12 91110703 91110744 -30146786 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1280 3404 30 2 2 chr12 91111567 91111963 -30145567 - MTA_Mm LTR MaLR 0 396 1 1 1280 314 183 14 0 chr12 91112188 91112259 -30145271 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1280 468 35 0 0 chr12 91114542 91114600 -30142930 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1280 417 308 73 118 chr12 91114640 91114927 -30142603 - B4A SINE B4 -18 274 1 1 1280 417 86 0 0 chr12 91115566 91115624 -30141906 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1280 224 280 11 0 chr12 91116714 91116807 -30140723 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1280 456 62 0 0 chr12 91117733 91117797 -30139733 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1280 21 0 0 0 chr12 91118376 91118397 -30139133 + AT_rich Low_complexity Low_complexity 1 21 0 1 1280 369 356 90 8 chr12 91119304 91119586 -30137944 + B4 SINE B4 1 276 -16 1 1280 278 324 73 45 chr12 91120826 91120936 -30136594 + PB1D10 SINE Alu 5 117 0 1 1280 180 0 0 0 chr12 91123451 91123471 -30134059 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1280 486 304 6 36 chr12 91123634 91123801 -30133729 - RSINE1 SINE B4 -2 163 2 1 1280 222 245 147 28 chr12 91124906 91125015 -30132515 - MIRb SINE MIR -15 253 132 1 1280 180 0 0 0 chr12 91125873 91125893 -30131637 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1280 719 328 30 30 chr12 91126299 91126569 -30130961 + B4A SINE B4 13 282 -10 1 1280 656 12 12 0 chr12 91126602 91126683 -30130847 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1280 991 76 0 22 chr12 91127818 91127953 -30129577 + B1_Mus1 SINE Alu 5 136 -12 1 1280 354 45 0 0 chr12 91127953 91127997 -30129533 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1280 364 289 58 0 chr12 91128013 91128117 -30129413 + PB1D9 SINE Alu 4 113 -7 1 1280 1788 154 46 19 chr12 91129525 91129850 -30127680 - Lx2B LINE L1 -18 6982 6649 1 1280 554 276 48 14 chr12 91129881 91130028 -30127502 - RSINE1 SINE B4 -2 163 12 1 1280 239 245 0 0 chr12 91130997 91131050 -30126480 + A-rich Low_complexity Low_complexity 2 54 0 1 1280 304 271 185 8 chr12 91131860 91131990 -30125540 - HAL1-3A_ME LINE L1 -420 2438 2286 1 1280 221 154 0 25 chr12 91132150 91132190 -30125340 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1280 333 281 32 27 chr12 91132325 91132435 -30125095 - B4A SINE B4 -115 109 2 1 1280 300 53 0 0 chr12 91134083 91134121 -30123409 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1280 361 333 0 7 chr12 91134643 91134788 -30122742 + B1_Mur3 SINE Alu 2 145 -4 1 1280 705 340 68 57 chr12 91134878 91135246 -30122284 + MTEb LTR MaLR 6 377 -2 1 1280 274 229 29 0 chr12 91136263 91136333 -30121197 + CT-rich Low_complexity Low_complexity 2 73 0 1 1280 246 128 0 0 chr12 91136956 91136995 -30120535 + (CTA)n Simple_repeat Simple_repeat 2 40 0 1 1280 810 216 0 0 chr12 91137000 91137148 -30120382 - B1_Mus1 SINE Alu 0 148 1 1 1280 336 231 231 0 chr12 91138555 91138676 -30118854 + MIR SINE MIR 104 252 -10 1 1280 266 208 104 94 chr12 91140207 91140313 -30117217 - RSINE1 SINE B4 0 165 59 1 1280 21 0 0 0 chr12 91140611 91140632 -30116898 + AT_rich Low_complexity Low_complexity 1 21 0 1 1280 400 176 10 10 chr12 91140936 91141039 -30116491 + (TG)n Simple_repeat Simple_repeat 2 104 0 1 1280 387 340 95 45 chr12 91141105 91141327 -30116203 - B4A SINE B4 -59 233 1 1 1280 31 0 0 0 chr12 91141498 91141529 -30116001 + AT_rich Low_complexity Low_complexity 1 31 0 1 1280 245 250 0 0 chr12 91143638 91143694 -30113836 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1280 678 140 0 0 chr12 91144669 91144783 -30112747 + (GAA)n Simple_repeat Simple_repeat 1 114 0 1 1280 247 306 101 65 chr12 91145528 91145696 -30111834 - MIR SINE MIR -68 194 21 1 1280 197 33 33 0 chr12 91145898 91145928 -30111602 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1280 478 294 29 14 chr12 91148812 91148950 -30108580 - B1F1 SINE Alu -8 141 2 1 1280 225 0 0 0 chr12 91149466 91149491 -30108039 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1280 912 87 0 0 chr12 91149491 91149639 -30107891 + (GA)n Simple_repeat Simple_repeat 2 150 0 1 1280 263 270 139 19 chr12 91150375 91150567 -30106963 + Lx9 LINE L1 7404 7617 -27 1 1280 1221 75 75 0 chr12 91150567 91150741 -30106789 + B2_Mm2 SINE B2 1 187 -8 1 1280 263 270 139 19 chr12 91150741 91150763 -30106767 + Lx9 LINE L1 7618 7643 -1 1 1280 26 30 0 0 chr12 91151513 91151546 -30105984 + AT_rich Low_complexity Low_complexity 1 33 0 1 1280 487 43 29 0 chr12 91151641 91151711 -30105819 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1280 1392 257 66 38 chr12 91151741 91152194 -30105336 - Lx7 LINE L1 -314 7382 6917 1 1280 281 306 25 90 chr12 91152544 91152666 -30104864 + MER5A DNA MER1_type 2 115 -74 1 1280 1042 96 120 0 chr12 91152716 91152883 -30104647 + B2_Mm2 SINE B2 2 188 -7 1 1280 498 106 57 34 chr12 91152905 91152993 -30104537 + B2_Mm2 SINE B2 106 195 0 1 1280 444 19 0 0 chr12 91153265 91153318 -30104212 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1280 198 118 0 0 chr12 91153886 91153920 -30103610 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 1 1280 674 136 8 8 chr12 91154758 91154877 -30102653 - URR1B DNA MER1_type 0 225 107 1 1280 22 0 0 0 chr12 91154877 91154899 -30102631 + AT_rich Low_complexity Low_complexity 1 22 0 1 1280 628 238 16 0 chr12 91154912 91155038 -30102492 - B1_Mur4 SINE Alu -6 144 17 1 1280 729 182 0 0 chr12 91155036 91155162 -30102368 - URR1B DNA MER1_type -100 125 1 1 1280 1096 68 0 26 chr12 91156195 91156332 -30101198 + B1_Mm SINE Alu 1 134 -13 1 1280 280 59 0 38 chr12 91156332 91156385 -30101145 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 1 1280 1096 68 0 26 chr12 91156385 91156398 -30101132 + B1_Mm SINE Alu 135 147 0 1 1280 462 196 0 0 chr12 91157411 91157508 -30100022 + A-rich Low_complexity Low_complexity 1 97 0 1 1280 21 0 0 0 chr12 91157657 91157678 -30099852 + AT_rich Low_complexity Low_complexity 1 21 0 1 1280 589 304 0 0 chr12 91158071 91158206 -30099324 - ID_B1 SINE B4 -2 222 88 1 1280 192 158 0 0 chr12 91158820 91158858 -30098672 + CT-rich Low_complexity Low_complexity 2 39 0 1 1280 435 19 0 0 chr12 91158867 91158919 -30098611 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1280 1028 238 53 50 chr12 91159741 91160082 -30097448 - Lx7 LINE L1 -1 7695 7354 1 1280 387 0 0 0 chr12 91160086 91160129 -30097401 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1280 201 121 0 0 chr12 91160173 91160206 -30097324 + (GGGGA)n Simple_repeat Simple_repeat 1 33 0 2 1280 2702 228 72 62 chr12 91160206 91161225 -30096305 - Lx7 LINE L1 -331 7365 6238 1 1280 246 128 0 0 chr12 91163009 91163048 -30094482 + (ATG)n Simple_repeat Simple_repeat 2 40 0 2 1280 240 359 103 27 chr12 91163054 91163200 -30094330 + MER102b DNA MER1_type 120 276 -65 2 1280 513 0 0 0 chr12 91163385 91163442 -30094088 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1280 815 337 43 14 chr12 91163453 91163733 -30093797 - B4A SINE B4 -3 289 2 2 1280 216 0 0 0 chr12 91164302 91164326 -30093204 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1280 214 98 73 0 chr12 91164804 91164845 -30092685 + (TTATA)n Simple_repeat Simple_repeat 4 47 0 2 1280 256 276 109 103 chr12 91165893 91166067 -30091463 + MER58A DNA MER1_type 50 224 0 2 1280 1424 299 44 26 chr12 91166663 91167343 -30090187 - L1MA9 LINE L1 -6 6306 5615 2 1280 387 0 0 0 chr12 91168417 91168460 -30089070 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2 1280 186 388 26 26 chr12 91168612 91168768 -30088762 + MIRc SINE MIR 2 157 -111 2 1280 396 0 0 0 chr12 91169586 91169630 -30087900 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1280 188 342 98 16 chr12 91171103 91171225 -30086305 + L3 LINE CR1 4164 4295 -194 2 1280 23 0 0 0 chr12 91172426 91172449 -30085081 + AT_rich Low_complexity Low_complexity 1 23 0 2 1280 624 94 0 0 chr12 91172622 91172728 -30084802 + (TC)n Simple_repeat Simple_repeat 1 106 0 2 1280 207 0 0 0 chr12 91172728 91172751 -30084779 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1280 387 83 0 0 chr12 91173098 91173158 -30084372 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1280 21 36 0 0 chr12 91175390 91175418 -30082112 + AT_rich Low_complexity Low_complexity 1 28 0 2 1280 557 353 26 44 chr12 91177384 91177493 -30080037 + B4A SINE B4 2 103 -189 2 1280 1758 193 80 6 chr12 91177493 91177857 -30079673 - ORR1B1 LTR MaLR -2 392 2 2 1280 557 353 26 44 chr12 91177857 91178017 -30079513 + B4A SINE B4 104 266 -26 2 1280 396 0 0 0 chr12 91178019 91178063 -30079467 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1280 236 435 17 0 chr12 91179457 91179572 -30077958 - PB1D10 SINE Alu 0 117 1 2 1280 450 0 0 0 chr12 91180779 91180829 -30076701 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1280 614 13 13 0 chr12 91181722 91181797 -30075733 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1280 336 137 135 14 chr12 91182236 91182310 -30075220 - URR1B DNA MER1_type 0 225 143 2 1280 695 185 37 74 chr12 91182413 91182576 -30074954 - URR1B DNA MER1_type -68 157 1 2 1280 395 68 17 0 chr12 91184892 91184951 -30072579 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1280 264 59 0 0 chr12 91185774 91185808 -30071722 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2 1280 279 295 16 32 chr12 91186054 91186180 -30071350 + CT-rich Low_complexity Low_complexity 6 129 0 2 1280 464 217 5 42 chr12 91188322 91188478 -30069052 - ORR1B2 LTR MaLR -113 261 133 2 1280 25 0 0 0 chr12 91190089 91190114 -30067416 + AT_rich Low_complexity Low_complexity 1 25 0 2 1280 797 67 0 8 chr12 91190114 91190235 -30067295 - L1Md_F2 LINE L1 -10 6572 6453 2 1280 2422 38 0 0 chr12 91190235 91190527 -30067003 + L1Md_F2 LINE L1 6203 6494 -88 2 1280 300 70 0 0 chr12 91190822 91190865 -30066665 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1280 309 315 144 20 chr12 91190969 91191115 -30066415 - RSINE1 SINE B4 0 165 2 2 1280 233 57 0 28 chr12 91192638 91192674 -30064856 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1280 189 271 21 0 chr12 91193281 91193329 -30064201 - MIR3 SINE MIR -37 171 123 2 1280 535 339 19 22 chr12 91193547 91193735 -30063795 - ID_B1 SINE B4 -74 218 16 2 1280 218 157 58 35 chr12 91194580 91194666 -30062864 + CT-rich Low_complexity Low_complexity 3 90 0 2 1280 223 343 42 14 chr12 91195415 91195557 -30061973 - L2 LINE L2 -445 2974 2829 2 1280 555 16 0 0 chr12 91196064 91196128 -30061402 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1280 235 289 72 84 chr12 91196156 91196322 -30061208 - RSINE1 SINE B4 0 165 2 2 1280 333 0 0 0 chr12 91196494 91196531 -30060999 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1280 330 115 0 0 chr12 91197419 91197471 -30060059 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 2 1280 213 314 101 37 chr12 91197971 91198080 -30059450 + L2a LINE L2 2947 3062 -364 2 1280 270 143 0 0 chr12 91198522 91198571 -30058959 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1280 2913 71 0 0 chr12 91199051 91199430 -30058100 + L1Md_F2 LINE L1 6192 6570 -12 2 1280 220 172 17 17 chr12 91199488 91199547 -30057983 + CT-rich Low_complexity Low_complexity 3 61 0 2 1280 194 128 26 0 chr12 91200051 91200090 -30057440 + CT-rich Low_complexity Low_complexity 1 40 0 2 1280 392 279 48 30 chr12 91200193 91200359 -30057171 + L1MA7 LINE L1 5916 6084 -207 2 1280 222 282 123 27 chr12 91201003 91201076 -30056454 + ID4_ SINE ID 1 80 -3 2 1280 225 0 0 0 chr12 91201853 91201878 -30055652 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1280 315 231 51 13 chr12 91202340 91202419 -30055111 - MTEa LTR MaLR -5 374 293 2 1280 228 254 51 0 chr12 91202915 91202974 -30054556 - ID4_ SINE ID -16 67 6 2 1280 306 347 98 36 chr12 91203308 91203664 -30053866 - L1M5 LINE L1 -1959 4187 3810 2 1280 280 350 35 55 chr12 91204052 91204197 -30053333 - MLT1A0 LTR MaLR 0 365 224 2 1280 509 244 57 36 chr12 91204332 91204472 -30053058 + B1F1 SINE Alu 6 148 -1 2 1280 846 332 63 8 chr12 91204897 91205149 -30052381 - B4A SINE B4 -2 290 25 2 1280 745 292 78 42 chr12 91205218 91205525 -30052005 - Lx8 LINE L1 -16 7457 7140 2 1280 335 186 26 17 chr12 91206494 91206507 -30051023 + polypyrimidine Low_complexity Low_complexity 109 121 0 2 1280 1320 44 0 16 chr12 91206507 91206690 -30050840 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1280 335 186 26 17 chr12 91206690 91206791 -30050739 + CT-rich Low_complexity Low_complexity 7 108 0 2 1280 280 59 39 0 chr12 91207096 91207147 -30050383 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 2 1280 181 239 22 0 chr12 91210031 91210077 -30047453 + L3 LINE CR1 4134 4180 -309 2 1280 22 35 0 0 chr12 91211134 91211163 -30046367 + AT_rich Low_complexity Low_complexity 1 29 0 2 1280 1011 309 46 17 chr12 91213086 91213432 -30044098 - MTE2b LTR MaLR -13 366 11 2 1280 185 184 0 125 chr12 91213708 91213764 -30043766 - L2 LINE L2 -1598 1821 1773 2 1280 216 0 0 0 chr12 91213843 91213867 -30043663 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1280 326 259 0 8 chr12 91214071 91214188 -30043342 + (TA)n Simple_repeat Simple_repeat 1 116 0 2 1280 21 0 0 0 chr12 91217186 91217207 -30040323 + AT_rich Low_complexity Low_complexity 1 21 0 2 1280 516 309 82 4 chr12 91217328 91217505 -30040025 + B3A SINE B2 1 186 -30 2 1280 222 37 0 0 chr12 91217587 91217614 -30039916 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1280 513 0 0 0 chr12 91217614 91217670 -30039860 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1280 612 314 50 38 chr12 91217679 91218020 -30039510 - L1MA6 LINE L1 -364 5936 5592 2 1280 350 325 39 52 chr12 91218085 91218393 -30039137 - L1MA6 LINE L1 -689 5608 5305 2 1280 427 322 78 50 chr12 91218444 91218663 -30038867 - MLT1A1 LTR MaLR 0 408 184 2 1280 966 306 17 4 chr12 91219691 91219924 -30037606 - B4A SINE B4 -4 288 53 2 1280 2368 24 0 0 chr12 91219972 91220261 -30037269 - L1_Mm LINE L1 -2505 3378 3090 2 1280 1717 42 0 5 chr12 91220264 91220481 -30037049 + L1Md_F3 LINE L1 6365 6580 -4 2 1280 294 148 0 0 chr12 91220484 91220538 -30036992 + (GGGAGA)n Simple_repeat Simple_repeat 1 54 0 2 1280 351 0 0 0 chr12 91222588 91222627 -30034903 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1280 235 67 21 43 chr12 91222721 91222768 -30034762 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1280 214 189 0 0 chr12 91223760 91223797 -30033733 - MIRb SINE MIR -15 253 217 2 1280 378 342 69 49 chr12 91223886 91224132 -30033398 + B4A SINE B4 37 287 -5 2 1280 333 102 0 0 chr12 91224176 91224235 -30033295 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1280 298 376 0 0 chr12 91225525 91225634 -30031896 - MIR SINE MIR -106 156 48 2 19 308 264 177 26 chr12 91226063 91226276 -30031254 + MIR SINE MIR 3 235 -27 2 1281 21 0 0 0 chr12 91226431 91226452 -30031078 + AT_rich Low_complexity Low_complexity 1 21 0 2 1281 240 326 39 71 chr12 91226545 91226700 -30030830 + RMER12 LTR ERVK 701 850 -472 2 1281 227 287 25 38 chr12 91227805 91227887 -30029643 - RSINE1 SINE B4 -206 86 7 2 1281 404 37 19 0 chr12 91227935 91227989 -30029541 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1281 1196 96 6 0 chr12 91228072 91228249 -30029281 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 2 1281 1231 35 7 0 chr12 91228330 91228475 -30029055 + B1_Mus2 SINE Alu 1 146 -1 2 1281 1167 268 39 66 chr12 91228491 91228855 -30028675 - ORR1E LTR MaLR 0 359 6 2 1281 231 384 36 0 chr12 91229306 91229418 -30028112 - MIRb SINE MIR -46 222 107 2 1281 194 91 30 0 chr12 91229526 91229559 -30027971 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 1281 264 77 0 0 chr12 91229805 91229844 -30027686 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 1281 413 234 6 19 chr12 91229912 91230009 -30027521 - B4 SINE B4 -128 96 2 2 1281 400 248 19 38 chr12 91231008 91231113 -30026417 - L2a LINE L2 -25 3401 3299 2 1281 307 290 70 39 chr12 91231516 91231645 -30025885 + ID_B1 SINE B4 1 133 -91 2 1281 432 0 0 0 chr12 91232777 91232825 -30024705 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1281 266 412 21 27 chr12 91233171 91233358 -30024172 + MER102a DNA MER1_type 89 274 -56 2 1281 226 363 43 78 chr12 91234092 91234450 -30023080 - L3b LINE CR1 -216 4292 3934 3 1281 1240 84 0 11 chr12 91235333 91235514 -30022016 + L1Md_F2 LINE L1 6391 6569 -13 3 1281 412 301 5 99 chr12 91235543 91235735 -30021795 + B4A SINE B4 2 175 -117 3 1281 186 224 0 0 chr12 91235742 91235791 -30021739 + G-rich Low_complexity Low_complexity 6 54 0 3 1281 504 0 0 0 chr12 91235865 91235921 -30021609 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1281 267 31 0 0 chr12 91235921 91235952 -30021578 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1281 215 31 31 0 chr12 91236230 91236262 -30021268 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1281 355 221 8 227 chr12 91236752 91236886 -30020644 + MIR SINE MIR 47 151 -111 3 1281 1364 204 164 3 chr12 91237218 91237528 -30020002 + ORR1B2 LTR MaLR 8 367 0 3 1281 180 303 0 108 chr12 91238352 91238426 -30019104 + MIR3 SINE MIR 11 76 -132 3 1281 300 111 0 0 chr12 91238485 91238530 -30019000 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1281 235 143 0 0 chr12 91240970 91241025 -30016505 + (CATA)n Simple_repeat Simple_repeat 1 55 0 3 1281 665 309 73 11 chr12 91242681 91242953 -30014577 - B4A SINE B4 0 292 4 3 1281 249 33 0 0 chr12 91243055 91243085 -30014445 + (CAAAC)n Simple_repeat Simple_repeat 2 31 0 3 1281 1546 223 58 3 chr12 91243191 91243533 -30013997 + ORR1D1 LTR MaLR 1 361 -13 3 1281 999 317 21 39 chr12 91243822 91244104 -30013426 - B4A SINE B4 -8 284 8 3 1281 451 242 71 11 chr12 91244741 91244925 -30012605 - L1MD3 LINE L1 -14 7981 7787 3 1281 1077 68 7 0 chr12 91245239 91245387 -30012143 + Lx2 LINE L1 6495 6643 -354 3 1281 1317 153 0 14 chr12 91245387 91245605 -30011925 + Lx2 LINE L1 6775 6989 -8 3 1281 218 121 0 57 chr12 91245879 91245949 -30011581 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1281 870 278 107 15 chr12 91246373 91246636 -30010894 + B4A SINE B4 6 292 0 3 1281 541 281 8 15 chr12 91246994 91247124 -30010406 + B1_Mm SINE Alu 1 129 -18 3 1281 789 11 0 0 chr12 91247126 91247216 -30010314 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 1281 432 0 0 0 chr12 91247216 91247263 -30010267 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1281 21 36 0 0 chr12 91247282 91247310 -30010220 + AT_rich Low_complexity Low_complexity 1 28 0 3 1281 429 279 95 39 chr12 91247912 91248091 -30009439 - MIR SINE MIR 0 262 74 3 1281 207 0 0 0 chr12 91248594 91248617 -30008913 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1281 386 319 123 4 chr12 91248714 91248950 -30008580 - Tigger14a DNA MER2_type -60 264 1 3 1281 394 248 128 12 chr12 91249090 91249206 -30008324 + B1F SINE Alu 13 140 -9 3 1281 1975 254 16 20 chr12 91249379 91249888 -30007642 + Lx6 LINE L1 6930 7436 -24 3 1281 1245 61 0 0 chr12 91249888 91250036 -30007494 + B1_Mus1 SINE Alu 1 148 0 3 1281 490 172 77 32 chr12 91250167 91250290 -30007240 + B1_Mus2 SINE Alu 19 145 -4 3 1281 234 345 22 11 chr12 91250680 91250771 -30006759 + L2b LINE L2 2957 3048 -327 3 1281 208 350 48 14 chr12 91250874 91251019 -30006511 + L2b LINE L2 3186 3335 -91 3 1281 974 147 4 4 chr12 91251737 91251975 -30005555 + (TG)n Simple_repeat Simple_repeat 1 238 0 3 1281 186 43 0 0 chr12 91253496 91253519 -30004011 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1281 182 0 0 97 chr12 91254073 91254104 -30003426 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1281 1179 48 0 20 chr12 91254324 91254335 -30003195 - B1_Mm SINE Alu -1 146 138 3 1281 208 0 62 0 chr12 91254335 91254367 -30003163 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1281 1179 48 0 20 chr12 91254367 91254503 -30003027 - B1_Mm SINE Alu -10 137 2 3 1281 961 197 113 0 chr12 91254732 91254935 -30002595 + URR1A DNA MER1_type 1 226 0 3 1281 574 342 158 43 chr12 91255135 91255596 -30001934 - MLT1F2 LTR MaLR 0 560 47 3 1281 477 0 0 0 chr12 91256086 91256139 -30001391 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1281 387 0 0 0 chr12 91256139 91256181 -30001349 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1281 687 298 104 20 chr12 91256202 91256452 -30001078 - B4A SINE B4 -21 271 1 3 1281 272 417 16 36 chr12 91257705 91257956 -29999574 + MIR SINE MIR 15 260 -2 3 1281 397 236 48 34 chr12 91258267 91258473 -29999057 + L1MA7 LINE L1 6082 6290 -1 3 1281 1203 54 0 0 chr12 91258789 91258936 -29998594 + B1_Mus1 SINE Alu 2 148 0 3 1281 429 20 0 0 chr12 91258936 91258986 -29998544 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1281 422 314 0 0 chr12 91259796 91259901 -29997629 + B1F SINE Alu 9 113 -36 3 1281 35 83 0 0 chr12 91260573 91260657 -29996873 + AT_rich Low_complexity Low_complexity 1 84 0 3 1281 461 301 114 14 chr12 91260738 91260957 -29996573 + MER2 DNA MER2_type 91 331 -14 3 1281 186 118 0 0 chr12 91261950 91261984 -29995546 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 1281 3879 102 14 10 chr12 91262184 91262805 -29994725 - Lx3B LINE L1 -516 6457 5834 3 1281 1309 141 71 25 chr12 91262805 91263045 -29994485 + Lx3B LINE L1 6722 6972 -1 3 1281 342 0 0 0 chr12 91263049 91263087 -29994443 + (TAA)n Simple_repeat Simple_repeat 1 38 0 3 1281 181 149 20 41 chr12 91264001 91264050 -29993480 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 3 1281 1524 230 116 54 chr12 91264367 91264831 -29992699 - RLTR33 LTR ERVK -23 655 163 3 1281 369 381 78 7 chr12 91266399 91266695 -29990835 - L1MC LINE L1 -2247 5635 5319 3 1281 6602 90 5 10 chr12 91266759 91267720 -29989810 - Lx LINE L1 -6 6648 5693 3 1281 1598 143 1 4 chr12 91267718 91267989 -29989541 + Lx6 LINE L1 5414 5682 -1778 3 1281 252 149 0 0 chr12 91268051 91268098 -29989432 + (TCC)n Simple_repeat Simple_repeat 3 49 0 3 1281 250 300 0 0 chr12 91269055 91269115 -29988415 + B3 SINE B2 39 98 -118 3 1281 4326 14 0 0 chr12 91271499 91271981 -29985549 - LTRIS_Mm LTR ERV1 0 482 1 3 1281 231 299 68 107 chr12 91272873 91273079 -29984451 - L2c LINE L2 -11 3376 3179 3 1281 294 296 109 60 chr12 91273125 91273308 -29984222 - MLT1A0 LTR MaLR -12 353 162 3 1281 184 341 21 64 chr12 91274656 91274797 -29982733 + MIRm SINE MIR 35 169 -107 3 1281 22 0 0 0 chr12 91274952 91274974 -29982556 + AT_rich Low_complexity Low_complexity 1 22 0 3 1281 239 29 0 54 chr12 91275377 91275414 -29982116 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 3 1281 4334 52 7 0 chr12 91277410 91277951 -29979579 + L1Md_F3 LINE L1 6026 6570 -14 3 1281 193 247 80 27 chr12 91278802 91278877 -29978653 - MIR SINE MIR -92 170 92 3 1281 641 156 18 9 chr12 91278881 91278991 -29978539 + PB1D9 SINE Alu 3 113 -7 3 1281 418 288 70 31 chr12 91281803 91281932 -29975598 + RSINE1 SINE B4 15 148 -17 3 1281 315 0 0 0 chr12 91281936 91281971 -29975559 + (TAA)n Simple_repeat Simple_repeat 1 35 0 3 1281 293 261 64 80 chr12 91282178 91282206 -29975324 + MT2B LTR ERVL 135 160 -441 3 1281 551 182 50 0 chr12 91282206 91282305 -29975225 + B1_Mur2 SINE Alu 3 106 -43 3 1281 460 256 64 0 chr12 91282418 91282543 -29974987 - B1F SINE Alu -14 135 3 3 1281 198 322 21 11 chr12 91282775 91282885 -29974645 - MIRc SINE MIR -121 147 32 3 1281 525 294 119 6 chr12 91283652 91283688 -29973842 - B3A SINE B2 -5 193 153 3 1281 534 16 0 0 chr12 91283688 91283751 -29973779 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1281 525 294 119 6 chr12 91283751 91283882 -29973648 - B3A SINE B2 -46 152 7 3 1281 300 262 0 45 chr12 91284011 91284099 -29973431 - MTEa LTR MaLR -3 376 293 3 1281 726 261 79 51 chr12 91284133 91284347 -29973183 - MTEa LTR MaLR -154 225 6 3 1281 311 295 66 37 chr12 91284351 91284515 -29973015 - MLT1C LTR MaLR -32 435 284 3 1281 365 340 66 29 chr12 91284927 91285228 -29972302 - MER90 LTR ERV1 0 614 298 3 1281 1107 269 119 9 chr12 91285246 91285565 -29971965 + ORR1E LTR MaLR 1 354 -5 3 1281 269 329 54 60 chr12 91285635 91285784 -29971746 - MER90 LTR ERV1 -427 148 1 3 1281 907 324 16 8 chr12 91287955 91288207 -29969323 + B4A SINE B4 39 292 0 3 1281 495 33 0 0 chr12 91288258 91288319 -29969211 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1281 374 347 75 35 chr12 91288751 91288978 -29968552 - MLT1D LTR MaLR 0 505 270 3 1281 342 0 0 0 chr12 91289232 91289270 -29968260 + (TTA)n Simple_repeat Simple_repeat 3 40 0 3 1281 861 302 29 44 chr12 91290734 91291118 -29966412 - MTEa LTR MaLR -1 378 1 3 1281 339 354 39 28 chr12 91291638 91291818 -29965712 - MamRep137 DNA TcMar? -10 434 253 3 1281 195 232 0 0 chr12 91291825 91291881 -29965649 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1281 607 300 78 46 chr12 91292757 91293040 -29964490 - B4A SINE B4 0 292 1 3 1281 238 263 127 34 chr12 91293362 91293480 -29964050 + MIR SINE MIR 91 219 -43 3 1281 230 310 47 12 chr12 91293615 91293700 -29963830 + MIRc SINE MIR 61 148 -120 3 1281 1006 289 67 25 chr12 91294743 91295144 -29962386 + RMER5 LTR ERV1 48 465 -69 3 1281 1652 67 0 0 chr12 91295652 91295930 -29961600 + L1_Mus2 LINE L1 6353 6566 0 3 1281 181 400 49 14 chr12 91297998 91298140 -29959390 - L2b LINE L2 -189 3186 3040 3 1281 314 211 28 14 chr12 91298882 91298954 -29958576 + B3A SINE B2 1 73 -125 3 1281 1456 106 139 4 chr12 91298972 91299011 -29958519 - Lx2 LINE L1 -74 6923 6884 3 1281 204 40 0 0 chr12 91299011 91299036 -29958494 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 3 1281 1456 106 139 4 chr12 91299036 91299270 -29958260 - Lx2 LINE L1 -114 6883 6615 3 1281 468 0 0 0 chr12 91299941 91299993 -29957537 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1281 343 290 93 40 chr12 91300302 91300453 -29957077 + HAL1-3A_ME LINE L1 2279 2437 -421 3 1281 333 100 0 0 chr12 91300455 91300505 -29957025 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1281 568 275 17 70 chr12 91301034 91301206 -29956324 + RSINE1 SINE B4 3 165 0 4 1281 584 27 14 0 chr12 91301231 91301305 -29956225 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1281 270 95 0 0 chr12 91301305 91301347 -29956183 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1281 228 293 108 12 chr12 91301734 91301817 -29955713 - MIR SINE MIR -97 111 21 4 1281 585 91 32 16 chr12 91302403 91302526 -29955004 + (TCTCTG)n Simple_repeat Simple_repeat 2 126 0 4 1281 333 0 0 0 chr12 91302527 91302564 -29954966 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1281 549 318 106 8 chr12 91302579 91302833 -29954697 - B4 SINE B4 -10 282 4 4 1281 7066 103 7 4 chr12 91305219 91306371 -29951159 - L1_Mus4 LINE L1 -22 6614 5461 4 1281 336 360 34 0 chr12 91307586 91307733 -29949797 + RSINE1 SINE B4 5 156 -9 4 1281 25 0 0 0 chr12 91307766 91307791 -29949739 + AT_rich Low_complexity Low_complexity 1 25 0 4 1281 451 260 15 75 chr12 91308283 91308416 -29949114 + AmnSINE1 SINE SINE 245 369 -206 4 1281 23 54 0 0 chr12 91308590 91308627 -29948903 + AT_rich Low_complexity Low_complexity 1 37 0 4 1281 1166 62 5 33 chr12 91310776 91310960 -29946570 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 4 1281 826 139 17 17 chr12 91310961 91311137 -29946393 + GA-rich Low_complexity Low_complexity 3 178 0 4 1281 342 0 0 0 chr12 91311137 91311175 -29946355 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1281 768 283 128 41 chr12 91311282 91311749 -29945781 + Lx8 LINE L1 6966 7473 0 4 1281 495 0 0 0 chr12 91311888 91311943 -29945587 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1281 484 324 84 81 chr12 91312563 91312859 -29944671 - MLT1A LTR MaLR -4 370 74 4 1281 36176 31 1 1 chr12 91313905 91320740 -29936790 - L1Md_T LINE L1 0 6585 1 4 1281 330 244 0 24 chr12 91320780 91320864 -29936666 - MTEb LTR MaLR -19 360 279 4 1281 675 171 0 0 chr12 91322206 91322335 -29935195 + GA-rich Low_complexity Low_complexity 3 131 0 4 1281 21 0 0 0 chr12 91323490 91323511 -29934019 + AT_rich Low_complexity Low_complexity 1 21 0 4 1281 315 0 0 0 chr12 91324336 91324371 -29933159 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1281 459 0 0 0 chr12 91324371 91324421 -29933109 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1281 800 311 76 38 chr12 91325102 91325416 -29932114 + Tigger7 DNA MER2_type 29 354 -2137 4 1281 810 102 0 0 chr12 91325699 91325817 -29931713 + (TA)n Simple_repeat Simple_repeat 1 118 0 4 1281 375 23 0 0 chr12 91325817 91325861 -29931669 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1281 546 260 168 24 chr12 91325929 91326138 -29931392 - B4A SINE B4 -44 248 10 4 1281 234 143 18 18 chr12 91326193 91326250 -29931280 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 4 1281 694 339 87 59 chr12 91326463 91327002 -29930528 - MER77 LTR ERVL -6 601 48 4 1281 454 253 85 16 chr12 91327278 91327467 -29930063 - MER97a DNA MER1_type? -48 846 645 4 1281 1314 217 14 120 chr12 91327672 91328090 -29929440 - ORR1D1 LTR MaLR 0 374 1 4 1281 429 327 66 35 chr12 91328246 91328474 -29929056 + ORR1E LTR MaLR 1 235 -124 4 1281 1039 103 0 14 chr12 91328557 91328704 -29928826 - B1_Mus1 SINE Alu -3 145 1 4 1281 477 319 105 28 chr12 91328870 91329193 -29928337 - MER97a DNA MER1_type? -352 542 195 4 1281 240 35 0 0 chr12 91329263 91329292 -29928238 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1281 414 0 0 0 chr12 91330732 91330778 -29926752 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1281 30 27 0 0 chr12 91331596 91331633 -29925897 + AT_rich Low_complexity Low_complexity 1 37 0 4 1281 296 136 61 0 chr12 91331672 91331738 -29925792 - Lx4B LINE L1 -64 6994 6925 4 1281 454 262 9 37 chr12 91332295 91332402 -29925128 + B1F SINE Alu 28 131 -18 4 1281 220 0 86 0 chr12 91332409 91332444 -29925086 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1281 319 232 23 145 chr12 91332444 91332460 -29925070 + ID_B1 SINE B4 214 223 -1 4 1281 960 35 0 0 chr12 91332590 91332706 -29924824 + (CAAAG)n Simple_repeat Simple_repeat 2 117 0 4 1281 487 60 0 0 chr12 91332706 91332773 -29924757 + L1_Mus2 LINE L1 6500 6566 0 4 1281 1069 83 0 0 chr12 91332829 91332985 -29924545 - L1Md_F2 LINE L1 0 6582 6427 4 1281 509 283 29 0 chr12 91333410 91333548 -29923982 - ID_B1 SINE B4 -5 219 78 4 1281 411 295 0 9 chr12 91333834 91333940 -29923590 + RSINE1 SINE B4 4 108 -57 4 1281 395 306 45 0 chr12 91334517 91334651 -29922879 + B1F2 SINE Alu 2 141 -8 4 1281 240 320 0 0 chr12 91335734 91335809 -29921721 - L1MA5 LINE L1 -49 6251 6177 4 1281 34 0 0 0 chr12 91335840 91335874 -29921656 + AT_rich Low_complexity Low_complexity 1 34 0 4 1281 541 278 40 0 chr12 91335893 91336019 -29921511 - RSINE1 SINE B4 -32 133 3 4 1281 198 0 0 0 chr12 91336107 91336129 -29921401 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 1281 1052 149 68 29 chr12 91336551 91336758 -29920772 - URR1A DNA MER1_type -11 215 1 4 1281 548 206 47 0 chr12 91338640 91338747 -29918783 - B3 SINE B2 0 216 105 4 1281 325 379 25 17 chr12 91338708 91338826 -29918704 - B4 SINE B4 -172 120 2 4 1281 2498 147 91 23 chr12 91338873 91339355 -29918175 + RLTR11A LTR ERVK 1 515 -13 4 1281 34 0 0 0 chr12 91339964 91339998 -29917532 + AT_rich Low_complexity Low_complexity 1 34 0 4 1281 21 0 0 0 chr12 91340110 91340131 -29917399 + AT_rich Low_complexity Low_complexity 1 21 0 4 1281 8413 120 31 6 chr12 91340132 91341436 -29916094 - Lx2 LINE L1 -2 6995 5660 4 1281 514 263 109 20 chr12 91343130 91343378 -29914152 - L1MA6 LINE L1 -6 6294 6025 4 1281 399 314 50 0 chr12 91344508 91344648 -29912882 + B1F1 SINE Alu 3 149 0 4 1281 675 57 19 9 chr12 91344675 91344781 -29912749 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 4 1281 547 253 25 76 chr12 91344795 91344992 -29912538 - Lx8 LINE L1 -593 6880 6694 4 1281 1371 186 111 0 chr12 91345001 91345280 -29912250 - Lx2A1 LINE L1 -61 6947 6638 4 1281 643 241 21 0 chr12 91345282 91345427 -29912103 - Lx8 LINE L1 -941 6532 6385 4 1281 1173 68 0 0 chr12 91345811 91345958 -29911572 + B1_Mm SINE Alu 1 147 0 4 1281 24 32 0 0 chr12 91345958 91345989 -29911541 + AT_rich Low_complexity Low_complexity 1 31 0 4 1281 591 139 24 107 chr12 91346168 91346337 -29911193 + Lx3A LINE L1 6822 6976 -5 4 1281 198 0 0 0 chr12 91346356 91346378 -29911152 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1281 24 32 0 0 chr12 91347103 91347134 -29910396 + AT_rich Low_complexity Low_complexity 1 31 0 4 1281 5808 3 0 0 chr12 91347865 91348508 -29909022 - L1Md_A LINE L1 0 6582 5940 4 1281 4645 102 48 10 chr12 91348710 91349416 -29908114 - Lx LINE L1 0 6654 5922 4 1281 468 36 0 0 chr12 91349416 91349472 -29908058 + HY1 scRNA scRNA 8 63 -49 4 1281 376 348 0 15 chr12 91350959 91351096 -29906434 - B1F2 SINE Alu -5 144 10 4 1281 21 36 0 0 chr12 91352672 91352700 -29904830 + AT_rich Low_complexity Low_complexity 1 28 0 4 1281 984 302 34 25 chr12 91355025 91355351 -29902179 - Lx8 LINE L1 -10 7463 7135 4 1281 326 190 191 40 chr12 91355377 91355503 -29902027 - Lx5 LINE L1 0 7050 6906 4 1281 478 293 43 31 chr12 91356010 91356172 -29901358 + RSINE1 SINE B4 2 165 0 4 1281 22 35 0 0 chr12 91356173 91356202 -29901328 + AT_rich Low_complexity Low_complexity 1 29 0 4 1282 200 35 35 0 chr12 91357434 91357463 -29900067 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1282 234 316 0 13 chr12 91358995 91359072 -29898458 + GA-rich Low_complexity Low_complexity 2 77 0 4 1282 1020 149 0 0 chr12 91359072 91359246 -29898284 + (GAA)n Simple_repeat Simple_repeat 3 176 0 4 1282 320 313 85 71 chr12 91359420 91359561 -29897969 - MIRb SINE MIR -74 194 52 4 1282 260 200 11 0 chr12 91360126 91360221 -29897309 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 1282 862 26 9 9 chr12 91360502 91360616 -29896914 + (TA)n Simple_repeat Simple_repeat 1 114 0 4 1282 758 296 42 18 chr12 91360876 91361093 -29896437 - B4A SINE B4 -63 229 8 4 1282 258 231 0 0 chr12 91362255 91362320 -29895210 + CT-rich Low_complexity Low_complexity 4 68 0 4 1282 441 81 0 0 chr12 91362859 91362921 -29894609 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1282 264 331 71 16 chr12 91364135 91364261 -29893269 + MER5A1 DNA MER1_type 2 134 -32 4 1282 707 298 83 53 chr12 91366539 91367205 -29890325 - L1MA9 LINE L1 -76 6236 5551 4 1282 692 268 60 15 chr12 91367561 91367762 -29889768 - B3 SINE B2 -5 211 2 4 1282 21 0 0 0 chr12 91367786 91367807 -29889723 + AT_rich Low_complexity Low_complexity 1 21 0 4 1282 402 281 108 38 chr12 91369062 91369247 -29888283 - B3A SINE B2 0 198 1 4 1282 998 95 7 0 chr12 91370156 91370304 -29887226 + (GAAA)n Simple_repeat Simple_repeat 1 149 0 4 1282 369 0 0 0 chr12 91371240 91371281 -29886249 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1282 1101 256 38 90 chr12 91372005 91372405 -29885125 - MTEb LTR MaLR 0 379 1 4 1282 2251 197 79 13 chr12 91372694 91373239 -29884291 + Lx9 LINE L1 6993 7573 -71 4 1282 297 0 0 0 chr12 91373242 91373275 -29884255 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1282 242 109 65 0 chr12 91373302 91373348 -29884182 - Lx9 LINE L1 -6 7638 7590 4 1282 233 395 45 11 chr12 91373803 91373982 -29883548 - MIRb SINE MIR -39 229 45 4 1282 399 366 123 66 chr12 91374132 91374429 -29883101 - B4 SINE B4 -18 274 1 4 1282 4633 213 58 44 chr12 91375970 91377085 -29880445 - Lx5 LINE L1 -39 7011 5881 4 1282 374 356 79 0 chr12 91377382 91377559 -29879971 - MLT1B LTR MaLR -188 202 12 5 1282 210 91 0 0 chr12 91377751 91377784 -29879746 + (ATG)n Simple_repeat Simple_repeat 1 33 0 5 1282 182 372 58 0 chr12 91378063 91378149 -29879381 - MIR3 SINE MIR -17 191 101 5 1282 3964 246 64 18 chr12 91378209 91379270 -29878260 + Lx7 LINE L1 5927 7036 -660 5 1282 599 281 22 0 chr12 91379390 91379529 -29878001 - MTE2b LTR MaLR -52 327 186 5 1282 255 61 0 0 chr12 91380110 91380143 -29877387 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 5 1282 300 143 0 0 chr12 91383156 91383212 -29874318 + (TTCA)n Simple_repeat Simple_repeat 4 59 0 5 1282 318 343 29 29 chr12 91383213 91383315 -29874215 - B1F1 SINE Alu -7 110 9 5 1282 181 383 12 0 chr12 91383706 91383787 -29873743 - L3 LINE CR1 -907 3582 3501 5 1282 1061 112 31 0 chr12 91384143 91384303 -29873227 + L1_Mus2 LINE L1 6381 6545 -21 5 1282 2437 97 3 34 chr12 91384548 91384900 -29872630 - Lx LINE L1 -307 6347 6007 5 1282 1819 127 22 31 chr12 91384900 91385218 -29872312 + Lx LINE L1 6340 6654 0 5 1282 542 71 12 0 chr12 91386252 91386336 -29871194 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1282 711 81 0 0 chr12 91386336 91386434 -29871096 + (TA)n Simple_repeat Simple_repeat 1 99 0 5 1282 347 306 45 50 chr12 91386959 91387138 -29870392 - MIRc SINE MIR -2 266 89 5 1282 286 331 22 75 chr12 91387514 91387648 -29869882 - PB1 SINE Alu 0 127 1 5 1282 432 117 0 0 chr12 91387700 91387777 -29869753 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 5 1282 771 66 0 0 chr12 91387778 91387884 -29869646 + (TG)n Simple_repeat Simple_repeat 1 106 0 5 1282 647 207 8 0 chr12 91387909 91388030 -29869500 - B3A SINE B2 -76 122 1 5 1282 25 31 0 0 chr12 91390815 91390847 -29866683 + AT_rich Low_complexity Low_complexity 1 32 0 5 1282 3207 144 47 40 chr12 91391381 91391960 -29865570 - RMER4B LTR ERVK -2 583 1 5 1282 245 268 0 0 chr12 91392869 91392925 -29864605 - MLT1A LTR MaLR -32 342 287 5 1282 512 116 11 0 chr12 91393316 91393411 -29864119 + (CA)n Simple_repeat Simple_repeat 2 97 0 5 1282 450 0 0 0 chr12 91394117 91394167 -29863363 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1282 308 296 0 12 chr12 91394292 91394374 -29863156 + B3A SINE B2 1 81 -117 5 1282 235 238 16 0 chr12 91395151 91395214 -29862316 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1282 341 237 170 88 chr12 91395578 91395749 -29861781 + B3 SINE B2 27 211 -5 5 1282 683 319 48 41 chr12 91396867 91397161 -29860369 - MER70A LTR ERVL -8 464 169 5 1282 463 259 19 89 chr12 91397433 91397590 -29859940 - MER58B DNA MER1_type -23 318 173 5 1282 537 148 9 18 chr12 91397597 91397707 -29859823 - Lx5 LINE L1 -977 6073 5965 5 1282 1097 277 19 19 chr12 91397696 91397954 -29859576 + Lx5 LINE L1 6790 7047 -3 5 1282 260 158 0 17 chr12 91398827 91398885 -29858645 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1282 313 353 58 29 chr12 91398996 91399133 -29858397 - MER20 DNA MER1_type -69 150 10 5 1282 210 360 81 0 chr12 91399176 91399312 -29858218 - MER5A DNA MER1_type -6 183 37 5 1282 596 161 22 14 chr12 91399827 91399966 -29857564 + CT-rich Low_complexity Low_complexity 6 145 0 5 1282 205 221 0 42 chr12 91400405 91400476 -29857054 + (CAT)n Simple_repeat Simple_repeat 1 68 0 5 1282 1149 82 0 0 chr12 91401870 91402017 -29855513 + B1_Mus1 SINE Alu 2 148 0 5 1282 249 298 141 58 chr12 91402097 91402218 -29855312 - MLT1I LTR MaLR -97 314 184 5 1282 750 339 42 24 chr12 91403608 91403895 -29853635 + B4 SINE B4 1 292 0 5 1282 191 241 23 0 chr12 91405602 91405689 -29851841 + (TGGA)n Simple_repeat Simple_repeat 1 89 0 5 1282 2853 46 74 0 chr12 91405693 91406060 -29851470 - MTA_Mm LTR MaLR -2 394 1 5 1282 201 250 0 0 chr12 91406133 91406177 -29851353 + CT-rich Low_complexity Low_complexity 2 45 0 5 1282 267 31 0 0 chr12 91408761 91408793 -29848737 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 5 1282 407 19 19 0 chr12 91409549 91409601 -29847929 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1282 3203 81 11 19 chr12 91411780 91412244 -29845286 - L1_Mus3 LINE L1 -3 6635 6176 5 1282 738 76 0 0 chr12 91412252 91412344 -29845186 + L1_Mus3 LINE L1 6087 6178 -460 5 1282 236 318 0 106 chr12 91412739 91412880 -29844650 - MER20 DNA MER1_type -1 218 93 5 1282 29 0 0 0 chr12 91414052 91414081 -29843449 + AT_rich Low_complexity Low_complexity 1 29 0 5 1282 4907 29 3 2 chr12 91414431 91415019 -29842511 - L1Md_F2 LINE L1 0 6582 5994 5 1282 305 102 0 17 chr12 91415248 91415308 -29842222 + (CAAA)n Simple_repeat Simple_repeat 1 59 0 5 1282 200 169 41 27 chr12 91416387 91416460 -29841070 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1282 306 0 0 0 chr12 91417000 91417034 -29840496 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1282 551 336 15 8 chr12 91417035 91417167 -29840363 - RSINE1 SINE B4 -18 147 15 5 1282 5287 71 68 1 chr12 91418213 91418934 -29838596 - Lx3_Mus LINE L1 -7 7002 6234 5 1282 225 274 116 23 chr12 91419196 91419282 -29838248 - MIRm SINE MIR -4 272 179 5 1282 190 350 35 35 chr12 91419379 91419524 -29838006 - MIR SINE MIR -68 194 50 5 1282 654 79 0 0 chr12 91419782 91419871 -29837659 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 1282 232 365 7 56 chr12 91420677 91420819 -29836711 - MIRb SINE MIR -78 190 48 5 1282 352 290 57 64 chr12 91420966 91421106 -29836424 - MER58A DNA MER1_type -49 175 37 5 1282 265 269 20 52 chr12 91421969 91422080 -29835450 - L1MA9 LINE L1 -289 6002 5897 5 1282 231 88 0 0 chr12 91422881 91422915 -29834615 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1282 526 314 79 51 chr12 91424689 91424867 -29832663 + B3A SINE B2 2 184 -14 5 1282 423 0 0 0 chr12 91426407 91426454 -29831076 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1282 548 96 48 8 chr12 91427185 91427311 -29830219 + (TCTCTG)n Simple_repeat Simple_repeat 6 136 0 5 1282 398 324 97 104 chr12 91429017 91429438 -29828092 - MLT1F1 LTR MaLR -53 516 99 5 1282 747 195 219 0 chr12 91429442 91429606 -29827924 + B3 SINE B2 2 201 -15 5 1282 377 339 26 26 chr12 91429761 91429988 -29827542 + L3 LINE CR1 3554 3780 -709 5 1282 480 357 42 42 chr12 91430163 91430400 -29827130 + Tigger5 DNA MER2_type 2 238 -2168 5 1282 613 300 14 39 chr12 91430715 91430996 -29826534 + L1_Rod LINE L1 4804 5077 -770 5 1282 199 360 87 8 chr12 91431293 91431413 -29826117 - MIRc SINE MIR -19 249 119 5 1282 1458 78 16 0 chr12 91431413 91431604 -29825926 + B2_Mm2 SINE B2 2 195 0 5 1282 477 0 0 0 chr12 91432896 91432949 -29824581 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1282 297 0 0 0 chr12 91432949 91432981 -29824549 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1282 480 77 0 0 chr12 91433584 91433649 -29823881 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1282 189 94 0 0 chr12 91436163 91436195 -29821335 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1282 351 0 0 0 chr12 91439290 91439329 -29818201 + (TATG)n Simple_repeat Simple_repeat 2 40 0 5 1282 362 328 51 28 chr12 91439616 91439792 -29817738 + MIR SINE MIR 51 230 -32 5 1282 180 0 0 0 chr12 91441985 91442005 -29815525 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1282 690 42 0 0 chr12 91443933 91444028 -29813502 - L1Md_T LINE L1 0 6582 6488 5 1282 280 133 16 16 chr12 91445769 91445830 -29811700 + GA-rich Low_complexity Low_complexity 2 62 0 5 1282 1145 279 64 0 chr12 91447047 91447345 -29810185 + MTE2b LTR MaLR 51 367 -12 5 1282 270 136 0 0 chr12 91447401 91447445 -29810085 + (CAT)n Simple_repeat Simple_repeat 2 45 0 5 1282 266 181 27 14 chr12 91449442 91449515 -29808015 - MADE2 DNA Mariner 0 80 7 5 1282 1134 23 0 0 chr12 91449728 91449861 -29807669 + (TC)n Simple_repeat Simple_repeat 2 134 0 5 1282 267 259 25 0 chr12 91450259 91450340 -29807190 + GA-rich Low_complexity Low_complexity 1 83 0 5 1282 640 261 146 5 chr12 91451115 91451300 -29806230 + ID_B1 SINE B4 10 220 -4 5 1282 388 288 89 22 chr12 91451331 91451466 -29806064 + ID_B1 SINE B4 81 224 0 5 1282 1416 48 0 16 chr12 91451619 91451809 -29805721 - L1_Mus2 LINE L1 -2 6564 6378 5 1282 23 0 0 0 chr12 91451932 91451955 -29805575 + AT_rich Low_complexity Low_complexity 1 23 0 5 1282 284 160 59 10 chr12 91452547 91452648 -29804882 + CT-rich Low_complexity Low_complexity 4 109 0 5 1282 253 313 0 10 chr12 91452656 91452756 -29804774 + GA-rich Low_complexity Low_complexity 1 99 0 5 1282 205 121 69 0 chr12 91454066 91454124 -29803406 + (TCTCTG)n Simple_repeat Simple_repeat 6 67 0 5 1282 182 71 36 0 chr12 91454356 91454384 -29803146 - L2 LINE L2 -578 2841 2813 5 1282 441 0 0 0 chr12 91454533 91454582 -29802948 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 5 1282 429 20 0 0 chr12 91454698 91454748 -29802782 + (TTCTCC)n Simple_repeat Simple_repeat 4 53 0 5 1282 198 0 0 0 chr12 91454812 91454834 -29802696 + (TTG)n Simple_repeat Simple_repeat 1 22 0 5 1282 816 193 0 0 chr12 91454834 91454969 -29802561 - B1_Mus1 SINE Alu -13 135 1 5 1282 272 183 68 40 chr12 91454969 91455043 -29802487 - 4.5SRNA scRNA scRNA -2 92 17 5 1282 317 24 24 0 chr12 91455519 91455561 -29801969 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1282 226 257 26 17 chr12 91455748 91455863 -29801667 - HAL1 LINE L1 -274 2233 2118 5 1282 240 304 86 43 chr12 91455901 91456018 -29801512 - L2a LINE L2 -4 3422 3301 5 1282 422 298 122 37 chr12 91456295 91456591 -29800939 - HAL1 LINE L1 -743 1764 1444 5 1282 261 167 0 0 chr12 91456751 91456805 -29800725 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1282 236 297 16 0 chr12 91456934 91456998 -29800532 + CT-rich Low_complexity Low_complexity 6 70 0 5 1282 348 287 67 98 chr12 91457045 91457300 -29800230 - B4 SINE B4 -11 281 35 6 1282 184 130 43 0 chr12 91458349 91458395 -29799135 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 6 1282 744 182 29 7 chr12 91459077 91459215 -29798315 + B1_Mur3 SINE Alu 9 149 0 6 1282 1217 212 121 32 chr12 91459520 91459802 -29797728 + ORR1C1 LTR MaLR 1 307 -71 6 1282 458 275 47 0 chr12 91459813 91459962 -29797568 - Lx5 LINE L1 -3 7047 6892 6 1282 479 160 0 136 chr12 91459966 91460077 -29797453 + ORR1C1 LTR MaLR 274 387 -7 6 1282 419 127 0 0 chr12 91461164 91461235 -29796295 + Lx4A LINE L1 6986 7056 -2 6 1282 203 0 37 0 chr12 91462014 91462041 -29795489 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 6 1282 308 253 0 95 chr12 91462519 91462624 -29794906 + MIR SINE MIR 165 259 -3 6 1282 198 103 0 0 chr12 91463204 91463233 -29794297 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1282 315 0 0 0 chr12 91463256 91463291 -29794239 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1282 270 0 0 0 chr12 91463291 91463320 -29794210 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1282 207 0 0 0 chr12 91464451 91464474 -29793056 + (CCCCAA)n Simple_repeat Simple_repeat 1 23 0 6 1282 270 206 0 0 chr12 91464721 91464789 -29792741 + (TTCA)n Simple_repeat Simple_repeat 4 71 0 6 1282 900 0 0 0 chr12 91465361 91465461 -29792069 + (TTC)n Simple_repeat Simple_repeat 2 101 0 6 1282 216 0 0 0 chr12 91468221 91468245 -29789285 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1282 213 221 0 0 chr12 91470078 91470146 -29787384 + CT-rich Low_complexity Low_complexity 1 68 0 6 1282 678 327 41 18 chr12 91470542 91470760 -29786770 + B4 SINE B4 2 224 -68 6 1282 564 15 0 0 chr12 91470890 91470955 -29786575 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1282 203 227 90 15 chr12 91471423 91471490 -29786040 + MIR SINE MIR 173 244 -18 6 1282 194 175 75 0 chr12 91473318 91473358 -29784172 - L2c LINE L2 -24 3363 3321 6 1282 375 23 0 0 chr12 91475507 91475551 -29781979 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1282 504 105 0 0 chr12 91475671 91475747 -29781783 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1282 232 375 55 10 chr12 91476240 91476442 -29781088 - MIR SINE MIR 0 262 52 6 1282 202 106 43 0 chr12 91476821 91476868 -29780662 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1282 303 162 0 0 chr12 91477267 91477347 -29780183 + (TA)n Simple_repeat Simple_repeat 1 80 0 6 1282 315 0 0 0 chr12 91477669 91477704 -29779826 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1282 205 282 166 19 chr12 91478373 91478502 -29779028 - MIRc SINE MIR -115 153 10 6 1282 630 318 34 0 chr12 91479953 91480101 -29777429 + RSINE1 SINE B4 11 163 -2 6 1282 258 105 0 0 chr12 91480103 91480141 -29777389 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1282 354 309 59 3 chr12 91481422 91481573 -29775957 + MLT1D LTR MaLR 21 189 -438 6 1282 734 32 11 0 chr12 91483039 91483132 -29774398 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 6 1282 324 48 0 0 chr12 91483166 91483208 -29774322 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1282 373 305 75 53 chr12 91483403 91483590 -29773940 - MLT1L LTR MaLR -256 354 164 6 1282 5676 34 4 6 chr12 91483623 91484306 -29773224 - L1Md_F3 LINE L1 -14 6570 5889 6 1282 267 89 0 0 chr12 91486732 91486755 -29770775 + (TA)n Simple_repeat Simple_repeat 2 24 0 6 1282 536 42 0 14 chr12 91486755 91486827 -29770703 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1282 267 89 0 0 chr12 91486827 91486848 -29770682 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1283 1937 212 78 8 chr12 91488525 91488910 -29768620 - MTC LTR MaLR -8 413 2 6 1283 208 392 20 20 chr12 91489172 91489271 -29768259 + MIRc SINE MIR 3 101 -167 6 1283 396 0 0 0 chr12 91489832 91489876 -29767654 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1283 408 313 107 45 chr12 91490394 91490638 -29766892 + B4A SINE B4 5 263 -29 6 1283 432 0 0 0 chr12 91490679 91490727 -29766803 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1283 573 15 0 0 chr12 91490727 91490792 -29766738 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1283 537 88 0 0 chr12 91490814 91490894 -29766636 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 6 1283 776 316 106 43 chr12 91492416 91492717 -29764813 - MLT1A0 LTR MaLR -35 330 11 6 1283 189 0 0 0 chr12 91492851 91492872 -29764658 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1283 558 184 0 0 chr12 91493738 91493863 -29763667 + (CA)n Simple_repeat Simple_repeat 1 125 0 6 1283 264 260 822 28 chr12 91494338 91494445 -29763085 + RMER30 DNA MER1_type 7 198 -4 6 1283 692 301 68 29 chr12 91496567 91496847 -29760683 + B4A SINE B4 2 292 0 6 1283 510 216 0 0 chr12 91496861 91496986 -29760544 + (CA)n Simple_repeat Simple_repeat 2 126 0 6 1283 4154 95 9 124 chr12 91498019 91498550 -29758980 - RMER17A LTR ERVK -3 748 287 6 1283 1128 128 0 0 chr12 91498550 91498729 -29758801 + (GA)n Simple_repeat Simple_repeat 1 179 0 6 1283 4154 95 9 124 chr12 91498729 91499042 -29758488 - RMER17A LTR ERVK -465 286 1 6 1283 491 266 65 4 chr12 91499610 91499855 -29757675 - L1M2 LINE L1 -2946 3197 2938 6 1283 456 51 0 0 chr12 91500012 91500071 -29757459 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1283 3864 225 66 26 chr12 91500801 91501782 -29755748 - Lx2B LINE L1 -15 6985 5966 2 1283 1917 180 0 9 chr12 91501786 91502134 -29755396 - L1_Mur2 LINE L1 -645 5232 4888 3 1283 22 0 0 0 chr12 91502759 91502781 -29754749 + AT_rich Low_complexity Low_complexity 1 22 0 4 1283 539 122 0 11 chr12 91503137 91503228 -29754302 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1283 509 307 32 64 chr12 91503378 91503566 -29753964 + B3A SINE B2 17 198 0 6 1283 564 42 0 0 chr12 91503838 91503909 -29753621 + (TTTTC)n Simple_repeat Simple_repeat 4 74 0 7 1283 780 69 15 15 chr12 91503912 91504044 -29753486 - L1_Mus3 LINE L1 -15 6623 6492 8 1283 326 23 23 0 chr12 91505100 91505143 -29752387 + (GA)n Simple_repeat Simple_repeat 2 45 0 9 1283 248 291 13 0 chr12 91505984 91506063 -29751467 + (CAA)n Simple_repeat Simple_repeat 3 82 0 1 1283 254 194 0 69 chr12 91506105 91506177 -29751353 + CT-rich Low_complexity Low_complexity 4 70 0 1 1283 333 0 0 0 chr12 91506471 91506508 -29751022 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1283 185 94 0 30 chr12 91506864 91506897 -29750633 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1283 195 69 0 0 chr12 91507025 91507054 -29750476 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1283 1018 244 178 48 chr12 91507497 91507992 -29749538 + RMER4B LTR ERVK 16 574 -11 1 1283 246 62 0 0 chr12 91507993 91508025 -29749505 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1 1283 196 151 27 27 chr12 91508548 91508623 -29748907 + T-rich Low_complexity Low_complexity 4 78 0 1 1283 291 361 52 0 chr12 91508812 91508909 -29748621 - MamRep38 DNA hAT -193 102 1 1 1283 790 38 9 9 chr12 91509815 91509891 -29747639 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1283 1063 119 6 6 chr12 91509891 91510068 -29747462 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2 1283 790 38 9 9 chr12 91510068 91510098 -29747432 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1283 39 22 0 0 chr12 91510328 91510374 -29747156 + AT_rich Low_complexity Low_complexity 1 46 0 2 1283 209 149 60 0 chr12 91510374 91510441 -29747089 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 1283 402 308 0 0 chr12 91510441 91510545 -29746985 - B3A SINE B2 -94 104 1 2 1283 310 117 0 48 chr12 91510663 91510726 -29746804 + Lx2 LINE L1 6936 6995 -2 2 1283 879 288 124 13 chr12 91510747 91510960 -29746570 - L1MA7 LINE L1 -35 6256 6028 2 1283 468 51 0 0 chr12 91510960 91511019 -29746511 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1283 879 288 124 13 chr12 91511019 91511256 -29746274 - L1MA7 LINE L1 -264 6027 5757 2 1283 892 120 7 7 chr12 91511930 91512081 -29745449 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 2 1283 1289 196 0 9 chr12 91512382 91512609 -29744921 + URR1B DNA MER1_type 1 225 0 2 1283 794 121 6 0 chr12 91512649 91512806 -29744724 + (GA)n Simple_repeat Simple_repeat 1 158 0 3 1283 198 0 0 0 chr12 91513042 91513064 -29744466 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1283 561 315 7 7 chr12 91513620 91513764 -29743766 - RSINE1 SINE B4 -20 145 2 3 1283 22 0 0 0 chr12 91514629 91514651 -29742879 + AT_rich Low_complexity Low_complexity 1 22 0 3 1283 300 339 8 25 chr12 91515219 91515340 -29742190 - MER45C DNA Tip100 -2 951 833 3 1283 221 0 35 0 chr12 91516588 91516617 -29740913 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 3 1283 21 36 0 0 chr12 91519129 91519157 -29738373 + AT_rich Low_complexity Low_complexity 1 28 0 3 1283 526 236 8 45 chr12 91520197 91520330 -29737200 - ORR1D2 LTR MaLR 0 370 243 3 1283 636 336 34 4 chr12 91520335 91520568 -29736962 - MLT1B LTR MaLR -108 282 43 3 1283 910 49 0 0 chr12 91520731 91520853 -29736677 - L1_Mus1 LINE L1 0 6567 6446 3 1283 426 20 0 0 chr12 91521138 91521189 -29736341 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1283 283 257 9 28 chr12 91522145 91522253 -29735277 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 1283 443 75 0 15 chr12 91525586 91525654 -29731876 - B1_Mm SINE Alu 0 147 81 4 1283 272 127 0 40 chr12 91525665 91525739 -29731791 + T-rich Low_complexity Low_complexity 1 71 0 4 1283 1039 70 35 0 chr12 91525740 91525882 -29731648 - B1_Mm SINE Alu 0 147 1 4 1283 24 0 0 0 chr12 91525892 91525916 -29731614 + AT_rich Low_complexity Low_complexity 1 24 0 4 1283 400 48 35 35 chr12 91526434 91526520 -29731010 + (TTTTG)n Simple_repeat Simple_repeat 4 89 0 4 1283 1119 68 7 7 chr12 91526520 91526667 -29730863 - B1_Mus2 SINE Alu 0 147 1 4 1283 180 333 66 60 chr12 91526995 91527177 -29730353 - L2c LINE L2 -2 3385 3203 4 1283 255 264 14 0 chr12 91527978 91528050 -29729480 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1283 245 347 0 21 chr12 91530222 91530319 -29727211 + GA-rich Low_complexity Low_complexity 4 98 0 5 1283 298 304 104 39 chr12 91530377 91530531 -29726999 + RSINE1 SINE B4 2 165 0 5 1283 239 348 86 16 chr12 91530575 91530762 -29726768 - MER63B DNA AcHobo -50 386 187 5 1283 25 0 0 0 chr12 91530805 91530830 -29726700 + AT_rich Low_complexity Low_complexity 1 25 0 5 1283 298 307 59 34 chr12 91530957 91531075 -29726455 - MIRb SINE MIR -103 165 45 5 1283 243 0 0 0 chr12 91531346 91531373 -29726157 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1283 367 327 0 0 chr12 91531483 91531587 -29725943 + B4 SINE B4 120 223 -69 5 1283 649 371 13 4 chr12 91532787 91533017 -29724513 + B4A SINE B4 61 292 0 5 1283 21 36 0 0 chr12 91533231 91533259 -29724271 + AT_rich Low_complexity Low_complexity 1 28 0 5 1283 315 0 0 0 chr12 91533259 91533294 -29724236 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1283 473 277 14 49 chr12 91533878 91534022 -29723508 - MER58B DNA MER1_type -12 329 191 6 1283 328 204 45 55 chr12 91535319 91535433 -29722097 + MTEa LTR MaLR 267 379 0 6 1283 29 60 0 0 chr12 91535514 91535564 -29721966 + AT_rich Low_complexity Low_complexity 1 50 0 6 1283 279 0 0 0 chr12 91535593 91535624 -29721906 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 1283 327 49 0 0 chr12 91535647 91535688 -29721842 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 6 1283 219 139 0 0 chr12 91536490 91536526 -29721004 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1283 459 63 0 0 chr12 91538656 91538719 -29718811 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1283 207 69 0 0 chr12 91539070 91539099 -29718431 + (TAA)n Simple_repeat Simple_repeat 1 29 0 6 1283 24 0 0 0 chr12 91540407 91540431 -29717099 + AT_rich Low_complexity Low_complexity 1 24 0 6 1283 192 135 0 0 chr12 91541505 91541542 -29715988 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1283 346 351 58 5 chr12 91541850 91542056 -29715474 + MER20 DNA MER1_type 1 217 -2 7 1283 23 0 0 0 chr12 91542666 91542689 -29714841 + AT_rich Low_complexity Low_complexity 1 23 0 7 1283 929 130 7 0 chr12 91542980 91543126 -29714404 - B1_Mus1 SINE Alu 0 148 2 7 1283 22 88 0 0 chr12 91543126 91543183 -29714347 + AT_rich Low_complexity Low_complexity 1 57 0 7 1283 261 167 0 97 chr12 91543643 91543736 -29713794 + (TTATA)n Simple_repeat Simple_repeat 3 86 0 7 1283 631 320 43 70 chr12 91544998 91545297 -29712233 - B4A SINE B4 -1 291 1 7 1283 4182 62 0 52 chr12 91545431 91546013 -29711517 + L1_Mus2 LINE L1 6014 6565 -1 7 1283 237 260 78 68 chr12 91546961 91547064 -29710466 - MIR SINE MIR -109 153 50 7 1283 213 121 0 0 chr12 91547294 91547327 -29710203 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1283 720 321 12 28 chr12 91548310 91548557 -29708973 + B4 SINE B4 2 244 -48 7 1283 522 297 98 19 chr12 91549742 91550006 -29707524 - RLTR15 LTR ERVK -30 329 45 8 1283 404 278 22 22 chr12 91551230 91551366 -29706164 + B1_Mur4 SINE Alu 1 136 -14 8 1283 25 31 0 0 chr12 91552713 91552745 -29704785 + AT_rich Low_complexity Low_complexity 1 32 0 8 1283 286 351 23 68 chr12 91552810 91553076 -29704454 - L1MA9 LINE L1 -157 6155 5902 8 1283 464 176 10 0 chr12 91553089 91553191 -29704339 + CT-rich Low_complexity Low_complexity 2 104 0 8 1283 576 42 0 0 chr12 91553191 91553262 -29704268 + (CA)n Simple_repeat Simple_repeat 1 71 0 8 1283 304 145 25 38 chr12 91553282 91553361 -29704169 + CT-rich Low_complexity Low_complexity 1 78 0 8 1283 229 313 153 5 chr12 91553375 91553590 -29703940 - L1MA9 LINE L1 -746 5394 5148 8 1283 21 0 0 0 chr12 91553590 91553611 -29703919 + AT_rich Low_complexity Low_complexity 1 21 0 8 1283 839 267 19 5 chr12 91553666 91553873 -29703657 + B3 SINE B2 1 210 -6 8 1283 252 374 96 13 chr12 91554211 91554368 -29703162 - L2 LINE L2 -972 2447 2278 8 1283 301 265 40 10 chr12 91554382 91554481 -29703049 - ORR1E LTR MaLR 0 379 270 9 1283 439 324 43 34 chr12 91555819 91556052 -29701478 - MIRc SINE MIR -1 267 33 9 1283 21 0 0 0 chr12 91556419 91556440 -29701090 + AT_rich Low_complexity Low_complexity 1 21 0 9 1283 519 95 0 0 chr12 91559066 91559140 -29698390 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 1283 24 77 0 0 chr12 91559682 91559734 -29697796 + AT_rich Low_complexity Low_complexity 1 52 0 9 1283 22 0 0 0 chr12 91560737 91560759 -29696771 + AT_rich Low_complexity Low_complexity 1 22 0 9 1283 324 70 0 0 chr12 91560924 91560967 -29696563 + (CAA)n Simple_repeat Simple_repeat 2 44 0 9 1283 390 42 0 0 chr12 91561160 91561208 -29696322 + (TC)n Simple_repeat Simple_repeat 2 49 0 9 1283 908 18 0 9 chr12 91561992 91562103 -29695427 + (TCTCC)n Simple_repeat Simple_repeat 3 112 0 9 1283 486 0 0 0 chr12 91563132 91563186 -29694344 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1283 228 280 53 120 chr12 91563763 91563913 -29693617 - LTR86C LTR ERVL -396 225 86 1 1283 1392 269 39 6 chr12 91564263 91564599 -29692931 + MTE2b LTR MaLR 33 379 0 1 1283 424 261 65 32 chr12 91564624 91564747 -29692783 + PB1 SINE Alu 1 127 0 1 1283 611 305 68 4 chr12 91564750 91564984 -29692546 - MER2 DNA MER2_type -89 256 8 1 1283 441 359 45 49 chr12 91565047 91565270 -29692260 + B4A SINE B4 2 223 -69 1 1283 234 250 14 14 chr12 91565322 91565391 -29692139 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1283 415 188 0 111 chr12 91566060 91566168 -29691362 + MT2B LTR ERVL 169 264 -337 1 1283 957 50 0 0 chr12 91566072 91566192 -29691338 + B1_Mus1 SINE Alu 18 137 -11 1 1283 269 26 26 0 chr12 91566192 91566230 -29691300 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1283 183 42 0 0 chr12 91566241 91566265 -29691265 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1283 1095 139 0 0 chr12 91566867 91567047 -29690483 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1283 180 176 0 0 chr12 91567047 91567081 -29690449 + C-rich Low_complexity Low_complexity 2 35 0 1 1283 560 130 0 9 chr12 91567144 91567260 -29690270 + (TC)n Simple_repeat Simple_repeat 2 116 0 1 1283 297 0 0 0 chr12 91567260 91567293 -29690237 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1283 558 43 0 0 chr12 91569010 91569079 -29688451 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1283 221 153 0 65 chr12 91571302 91571379 -29686151 + A-rich Low_complexity Low_complexity 1 72 0 1 1283 209 125 25 0 chr12 91572198 91572238 -29685292 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1283 384 48 48 0 chr12 91574482 91574545 -29682985 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 1 1283 258 32 0 0 chr12 91575355 91575386 -29682144 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1283 252 0 0 0 chr12 91575517 91575545 -29681985 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1283 771 243 97 0 chr12 91575728 91575934 -29681596 - URR1A DNA MER1_type 0 226 1 1 1283 966 123 100 0 chr12 91575959 91576129 -29681401 - L1Md_F2 LINE L1 -12 6570 6384 1 1283 420 248 45 122 chr12 91577185 91577341 -29680189 - B1_Mur1 SINE Alu -1 148 5 1 1283 746 206 93 11 chr12 91577477 91577621 -29679909 + B3A SINE B2 2 158 -40 1 1283 843 82 0 0 chr12 91577621 91577755 -29679775 + (TC)n Simple_repeat Simple_repeat 1 134 0 1 1283 746 206 93 11 chr12 91577755 91577792 -29679738 + B3A SINE B2 159 197 -1 1 1283 405 0 0 0 chr12 91577860 91577905 -29679625 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1283 348 324 86 93 chr12 91578057 91578326 -29679204 - MLT1A LTR MaLR -4 370 104 1 1283 341 263 31 10 chr12 91578778 91578874 -29678656 + MIRb SINE MIR 156 253 -15 1 1283 1698 168 44 3 chr12 91578991 91579332 -29678198 - RLTR15 LTR ERVK -3 356 2 1 1283 841 219 21 114 chr12 91579338 91579575 -29677955 + B3 SINE B2 2 216 0 1 1283 473 0 18 0 chr12 91581271 91581328 -29676202 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 1 1283 29 0 0 0 chr12 91582047 91582076 -29675454 + AT_rich Low_complexity Low_complexity 1 29 0 1 1283 5722 206 48 34 chr12 91582127 91583431 -29674099 - Lx5 LINE L1 -188 6862 5536 1 1283 2171 179 40 12 chr12 91583413 91583838 -29673692 + L1_Mur2 LINE L1 4757 5193 -684 1 1283 276 271 0 14 chr12 91584904 91584975 -29672555 + CT-rich Low_complexity Low_complexity 1 70 0 1 1283 324 325 53 32 chr12 91585159 91585362 -29672168 - MIRb SINE MIR -19 249 37 1 1283 1170 173 55 7 chr12 91585399 91585672 -29671858 - ORR1B2 LTR MaLR -4 390 102 1 1283 828 249 18 0 chr12 91585631 91585800 -29671730 - B3 SINE B2 -42 174 3 1 1283 788 184 13 33 chr12 91585899 91586051 -29671479 - B1_Mur3 SINE Alu 0 149 1 1 1283 360 260 89 61 chr12 91586380 91586560 -29670970 - HAL1 LINE L1 0 2507 2323 1 1283 468 0 0 0 chr12 91586839 91586891 -29670639 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1 1283 820 197 178 29 chr12 91586894 91587209 -29670321 + RMER4B LTR ERVK 56 417 -168 1 1283 228 291 51 0 chr12 91587203 91587282 -29670248 + RMER19C LTR ERVK 483 565 -46 1 1283 251 307 32 73 chr12 91587691 91587814 -29669716 - L1MEe LINE L1 -4601 253 136 1 1283 198 0 0 0 chr12 91588856 91588878 -29668652 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1 1283 459 247 82 49 chr12 91590082 91590265 -29667265 + Lx7 LINE L1 5634 5822 -1874 1 1283 453 299 23 38 chr12 91590940 91591072 -29666458 - B4 SINE B4 -162 130 1 1 1283 268 250 15 15 chr12 91592401 91592466 -29665064 + ID4 SINE ID 1 65 -18 1 1283 239 93 70 0 chr12 91592590 91592633 -29664897 - MT2A LTR ERVL 0 533 488 1 1283 200 59 0 29 chr12 91592637 91592672 -29664858 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1283 3955 164 84 1 chr12 91592672 91593399 -29664131 - MERVL_2A-int LTR ERVL -80 5681 4895 1 1283 2331 135 149 40 chr12 91593399 91593764 -29663766 - RMER16 LTR ERVK 0 533 153 1 1283 2016 58 0 15 chr12 91593764 91594029 -29663501 + L1Md_F2 LINE L1 6310 6570 -12 1 1283 2331 135 149 40 chr12 91594029 91594140 -29663390 - RMER16 LTR ERVK -381 152 5 1 1283 9122 194 54 9 chr12 91594140 91595903 -29661627 - MERVL_2A-int LTR ERVL -858 4903 3061 1 1283 4333 169 31 34 chr12 91595902 91596708 -29660822 - MERVL_2A-int LTR ERVL -2807 2954 2151 1 1283 3379 188 10 2 chr12 91596723 91597329 -29660201 - MERVL_2A-int LTR ERVL -3927 1834 1224 1 1283 233 213 33 0 chr12 91597351 91597412 -29660118 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1 1283 35493 68 0 5 chr12 91597415 91603632 -29653898 - L1Md_F2 LINE L1 -13 6572 288 1 1283 5051 114 147 5 chr12 91604173 91605047 -29652483 - Lx LINE L1 -37 6617 5622 1 1283 1080 207 0 22 chr12 91605149 91605376 -29652154 - MERVL_2A-int LTR ERVL -5510 251 30 1 1283 239 307 91 0 chr12 91606313 91606401 -29651129 + MLT1J1 LTR MaLR 315 410 -34 1 1283 25 0 0 0 chr12 91606582 91606607 -29650923 + AT_rich Low_complexity Low_complexity 1 25 0 1 1283 1013 243 52 17 chr12 91606619 91606770 -29650760 - 7SK RNA RNA -92 239 83 1 1283 2157 195 27 5 chr12 91606770 91607182 -29650348 - MTC LTR MaLR 0 421 1 1 1283 1013 243 52 17 chr12 91607182 91607260 -29650270 - 7SK RNA RNA -249 82 2 1 1283 24 0 0 0 chr12 91607412 91607436 -29650094 + AT_rich Low_complexity Low_complexity 1 24 0 1 1283 24 0 0 0 chr12 91609182 91609206 -29648324 + AT_rich Low_complexity Low_complexity 1 24 0 1 1283 570 279 161 12 chr12 91609310 91609502 -29648028 + ORR1E LTR MaLR 81 303 -56 1 1283 660 26 0 0 chr12 91609502 91609580 -29647950 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1283 570 279 161 12 chr12 91609580 91609630 -29647900 + ORR1E LTR MaLR 304 358 -1 1 1283 7512 112 19 7 chr12 91609694 91611640 -29645890 - L1_Mus4 LINE L1 -1 6635 4678 1 1283 411 309 15 31 chr12 91612191 91612321 -29645209 - RSINE1 SINE B4 -35 130 3 1 1283 362 173 13 0 chr12 91612781 91612856 -29644674 + (CACCAT)n Simple_repeat Simple_repeat 4 79 0 1 1283 1682 104 4 4 chr12 91613666 91613916 -29643614 - L1_Mus4 LINE L1 -1 6635 6386 1 1283 1081 262 94 39 chr12 91613944 91614309 -29643221 + MTE2b LTR MaLR 2 390 -6 1 1283 567 0 0 0 chr12 91614401 91614464 -29643066 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1283 241 226 0 0 chr12 91614464 91614526 -29643004 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1283 2578 114 90 2 chr12 91614611 91615024 -29642506 - Lx2 LINE L1 -2 6995 6547 1 1283 623 326 26 10 chr12 91615029 91615221 -29642309 - B4A SINE B4 -89 203 9 1 1283 266 323 21 41 chr12 91615724 91615821 -29641709 - RSINE1 SINE B4 -69 96 2 1 1283 2427 129 132 47 chr12 91616522 91617060 -29640470 - L1_Mus4 LINE L1 -19 6617 6055 1 1283 1214 273 107 81 chr12 91617166 91617289 -29640241 - Lx9 LINE L1 -22 7622 7513 1 1283 219 69 0 0 chr12 91617289 91617318 -29640212 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1283 1214 273 107 81 chr12 91617318 91618178 -29639352 - Lx9 LINE L1 -132 7512 6614 1 1283 321 221 65 28 chr12 91618165 91618272 -29639258 + Lx9 LINE L1 6521 6631 -1013 1 1283 25 0 0 0 chr12 91618659 91618684 -29638846 + AT_rich Low_complexity Low_complexity 1 25 0 1 1283 534 198 17 25 chr12 91619121 91619240 -29638290 + MER21-int LTR ERV1 3583 3700 -491 1 160 552 299 30 35 chr12 91619318 91619550 -29637980 + MER21-int LTR ERV1 3870 4100 -91 1 1284 24 0 0 0 chr12 91619653 91619677 -29637853 + AT_rich Low_complexity Low_complexity 1 24 0 1 1284 5573 52 9 4 chr12 91619786 91620486 -29637044 - L1Md_F2 LINE L1 -1 6581 5879 1 1284 645 356 20 106 chr12 91620910 91621315 -29636215 + MER89 LTR ERV1 173 542 -17 1 1284 238 337 32 32 chr12 91622611 91622706 -29634824 + MLT1H LTR MaLR 224 318 -231 1 1284 5329 66 10 0 chr12 91622848 91623568 -29633962 - L1_Mus1 LINE L1 0 6567 5874 1 1284 2994 93 5 0 chr12 91623568 91623997 -29633533 + L1_Mus1 LINE L1 5401 5831 -52 1 1284 961 313 84 21 chr12 91624232 91624659 -29632871 - RMER5 LTR ERV1 -48 486 33 1 1284 28 48 0 0 chr12 91625339 91625381 -29632149 + AT_rich Low_complexity Low_complexity 1 42 0 1 1284 1532 202 107 124 chr12 91625381 91625850 -29631680 - MT2A LTR ERVL -69 464 4 1 1284 506 82 12 0 chr12 91625850 91625935 -29631595 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1284 201 100 60 0 chr12 91626140 91626190 -29631340 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1284 201 167 0 0 chr12 91626274 91626310 -29631220 + T-rich Low_complexity Low_complexity 1 36 0 1 1284 310 250 6 77 chr12 91626619 91626744 -29630786 - B3A SINE B2 -14 184 1 1 1284 445 363 82 10 chr12 91626890 91627085 -29630445 + Tigger5 DNA MER2_type 1 209 -2197 1 1284 316 296 92 0 chr12 91627113 91627211 -29630319 + Tigger5 DNA MER2_type 2300 2406 0 1 1284 240 35 0 0 chr12 91627271 91627300 -29630230 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1284 1544 173 56 56 chr12 91627406 91627748 -29629782 - Lx4A LINE L1 0 7058 6717 1 1284 353 316 94 21 chr12 91628363 91628554 -29628976 - LTR50 LTR ERVL -590 205 1 1 1284 2305 89 3 3 chr12 91628682 91628997 -29628533 + ORR1A2 LTR MaLR 5 319 -8 1 1284 1913 201 6 17 chr12 91629635 91629995 -29627535 + ORR1B1 LTR MaLR 3 358 -36 1 1284 350 331 36 22 chr12 91629994 91630133 -29627397 + B4A SINE B4 10 150 -142 1 1284 312 163 52 42 chr12 91630136 91630232 -29627298 + Lx9 LINE L1 7548 7644 0 1 1284 432 336 113 8 chr12 91630289 91630508 -29627022 + MLT1G1 LTR MaLR 41 277 -302 1 1284 492 303 19 38 chr12 91630619 91630777 -29626753 + RSINE1 SINE B4 5 159 -6 2 1284 21 36 0 0 chr12 91630784 91630812 -29626718 + AT_rich Low_complexity Low_complexity 1 28 0 2 1284 274 309 72 93 chr12 91631205 91631397 -29626133 + MLT1G1 LTR MaLR 248 435 -160 1 1284 720 318 214 16 chr12 91631397 91632001 -29625529 + MER54A LTR ERVL 1 725 -176 2 1284 670 278 17 28 chr12 91632001 91632179 -29625351 + ORR1D2 LTR MaLR 1 176 -198 2 1284 892 235 9 5 chr12 91632216 91632434 -29625096 + ORR1D2 LTR MaLR 149 367 -3 2 1284 351 246 52 17 chr12 91632453 91632569 -29624961 + MER54A LTR ERVL 782 901 0 2 1284 303 277 22 37 chr12 91632653 91632788 -29624742 - L1MB3 LINE L1 -11 6172 6040 2 1284 938 223 141 37 chr12 91632811 91633109 -29624421 - MTD LTR MaLR -90 329 1 2 1284 334 224 164 0 chr12 91633112 91633246 -29624284 - L1MB2 LINE L1 -126 6045 5890 2 1284 732 273 17 0 chr12 91633323 91633499 -29624031 - B3A SINE B2 -18 180 2 2 1284 261 0 0 0 chr12 91633528 91633557 -29623973 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1284 254 148 0 18 chr12 91633578 91633633 -29623897 + T-rich Low_complexity Low_complexity 2 55 0 2 1284 2091 312 62 44 chr12 91633730 91635599 -29621931 - L1M4c LINE L1 -1346 5654 3754 2 1284 3537 101 76 4 chr12 91635935 91636464 -29621066 + RMER2 LTR ERV1 1 567 0 2 1284 204 167 0 0 chr12 91636466 91636514 -29621016 + T-rich Low_complexity Low_complexity 1 48 0 2 1284 304 248 101 8 chr12 91636598 91636803 -29620727 - L1M4c LINE L1 -3653 3681 3489 2 1284 239 265 61 10 chr12 91637073 91637172 -29620358 - L1M4c LINE L1 -4892 2116 2013 2 1284 843 278 102 16 chr12 91637546 91638112 -29619418 - L1M4c LINE L1 -5031 1977 1363 2 1284 1792 210 80 29 chr12 91638255 91638632 -29618898 + MTC LTR MaLR 26 421 0 2 1284 647 322 92 41 chr12 91638642 91639008 -29618522 - L1M4c LINE L1 -5925 1083 694 2 1284 885 296 118 12 chr12 91639008 91639347 -29618183 - MTE2b LTR MaLR -4 375 1 2 1284 647 322 92 41 chr12 91639347 91639395 -29618135 - L1M4c LINE L1 -6315 693 648 2 1284 462 261 0 34 chr12 91640499 91640617 -29616913 - PB1D7 SINE Alu -11 138 35 2 1284 239 300 18 107 chr12 91640837 91640949 -29616581 + RMER12 LTR ERVK 745 846 -476 2 1284 521 323 67 48 chr12 91640974 91641244 -29616286 - B4 SINE B4 -16 276 2 2 1284 24151 119 13 13 chr12 91641586 91644886 -29612644 - L1_Mur2 LINE L1 -529 5348 2062 2 1284 261 0 0 0 chr12 91644886 91644915 -29612615 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1284 24151 136 19 29 chr12 91644915 91646278 -29611252 - L1_Mur2 LINE L1 -3816 2061 703 2 1284 652 255 227 71 chr12 91647825 91648231 -29609299 + MT2B2 LTR ERVL 1 469 -115 2 1284 935 110 63 25 chr12 91648218 91648376 -29609154 - B2_Mm2 SINE B2 -19 176 13 2 1284 437 0 19 0 chr12 91648418 91648471 -29609059 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 2 1284 279 113 0 0 chr12 91648844 91648897 -29608633 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1284 252 0 0 0 chr12 91648897 91648925 -29608605 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1284 378 0 0 0 chr12 91648925 91648966 -29608564 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1284 268 276 47 101 chr12 91649858 91649987 -29607543 + B1F SINE Alu 27 148 -1 2 1284 549 80 0 0 chr12 91651426 91651501 -29606029 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 1284 3176 180 39 43 chr12 91652346 91652995 -29604535 + RLTR25B LTR ERVK 8 653 -375 2 1284 1024 192 86 5 chr12 91652997 91653217 -29604313 + Lx4A LINE L1 6820 7057 -1 2 1284 3299 78 31 11 chr12 91653255 91653708 -29603822 - L1_Mus3 LINE L1 -9 6629 6168 2 1284 481 299 29 67 chr12 91654420 91654628 -29602902 + MLT2B4 LTR ERVL 1 200 -356 2 1284 323 266 16 31 chr12 91654671 91654799 -29602731 + ERVL-B4-int LTR ERVL 23 148 -5566 2 1284 200 34 0 33 chr12 91655469 91655499 -29602031 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 1284 592 266 38 29 chr12 91655847 91656056 -29601474 + ERVL-B4-int LTR ERVL 311 521 -5193 2 1284 2314 233 40 5 chr12 91656068 91656642 -29600888 + ERVL-B4-int LTR ERVL 1362 1955 -3759 2 1284 246 95 0 0 chr12 91656877 91656919 -29600611 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 2 1284 199 296 112 11 chr12 91657153 91657298 -29600232 - MIR SINE MIR -15 253 83 2 1284 212 171 12 50 chr12 91657969 91658049 -29599481 + CT-rich Low_complexity Low_complexity 5 81 0 2 1284 1849 176 75 27 chr12 91658262 91658636 -29598894 + ORR1B1 LTR MaLR 1 392 -2 2 1284 422 332 28 33 chr12 91660146 91660361 -29597169 + ID_B1 SINE B4 4 217 -7 2 1284 920 328 73 26 chr12 91660938 91661454 -29596076 + MER34A LTR ERV1 3 537 -5 2 1284 594 342 100 5 chr12 91661992 91662212 -29595318 + B4A SINE B4 34 274 -18 2 1284 474 18 0 0 chr12 91662265 91662320 -29595210 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1284 24 0 0 0 chr12 91662400 91662424 -29595106 + AT_rich Low_complexity Low_complexity 1 24 0 2 1284 543 296 75 86 chr12 91662837 91663150 -29594380 - B4A SINE B4 0 292 10 2 1284 340 274 151 81 chr12 91663934 91664192 -29593338 - AmnSINE1 SINE SINE -110 465 190 2 1284 24 0 0 0 chr12 91664554 91664578 -29592952 + AT_rich Low_complexity Low_complexity 1 24 0 2 1284 181 292 21 0 chr12 91665005 91665053 -29592477 - L2c LINE L2 -6 3381 3333 2 1284 892 282 35 42 chr12 91665113 91665398 -29592132 - B4A SINE B4 0 292 10 2 1284 240 111 0 0 chr12 91665596 91665641 -29591889 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1284 272 344 54 0 chr12 91665672 91665765 -29591765 - MLT2C2 LTR ERVL -186 278 181 2 1284 311 141 51 0 chr12 91665824 91665902 -29591628 + GA-rich Low_complexity Low_complexity 2 83 0 2 1284 851 61 61 0 chr12 91665903 91666068 -29591462 + (GA)n Simple_repeat Simple_repeat 2 176 0 2 1284 289 308 117 32 chr12 91666227 91666415 -29591115 + L2a LINE L2 3223 3426 0 2 1284 497 369 28 53 chr12 91666482 91666800 -29590730 + MLT1J LTR MaLR 3 312 -200 2 1284 228 259 22 66 chr12 91666938 91667029 -29590501 - MLT1A1 LTR MaLR -4 404 318 2 1284 302 276 101 29 chr12 91667315 91667453 -29590077 - MTE-int LTR MaLR -25 1555 1408 2 1284 450 269 92 0 chr12 91667464 91667583 -29589947 + ID_B1 SINE B4 94 223 -1 2 1284 206 190 0 33 chr12 91667595 91667655 -29589875 + A-rich Low_complexity Low_complexity 2 59 0 2 1284 859 347 44 65 chr12 91667656 91668136 -29589394 - MTE-int LTR MaLR -156 1424 955 2 1284 3408 40 2 0 chr12 91668169 91668694 -29588836 + L1Md_F2 LINE L1 5448 5973 -609 2 1284 341 354 130 11 chr12 91668799 91668976 -29588554 - MLT-int LTR MaLR -933 802 605 2 1284 418 395 18 27 chr12 91668990 91669214 -29588316 - MTE-int LTR MaLR -1107 473 252 2 1284 701 281 69 133 chr12 91669429 91669801 -29587729 + RLTR23 LTR ERV1 8 347 -83 2 1284 522 0 0 0 chr12 91669801 91669859 -29587671 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 2 1284 701 281 69 133 chr12 91669859 91669938 -29587592 + RLTR23 LTR ERV1 348 429 -1 2 1284 1056 72 0 61 chr12 91670652 91670799 -29586731 + B1_Mm SINE Alu 3 140 -7 2 1284 207 0 0 0 chr12 91671518 91671541 -29585989 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2 1284 297 0 0 0 chr12 91671541 91671573 -29585957 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 2 1284 210 37 0 0 chr12 91671719 91671746 -29585784 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1284 837 28 0 0 chr12 91671746 91671852 -29585678 - B1_Mus2 SINE Alu -10 137 32 2 1284 1032 313 42 11 chr12 91671852 91672330 -29585200 + L1MA5 LINE L1 5775 6267 -33 2 1284 1481 93 0 5 chr12 91672496 91672711 -29584819 - L1_Mus1 LINE L1 0 6567 6354 2 1284 23 0 0 0 chr12 91672918 91672941 -29584589 + AT_rich Low_complexity Low_complexity 1 23 0 2 1284 2166 199 17 7 chr12 91673700 91674109 -29583421 - MTC LTR MaLR -3 418 6 2 1284 510 241 8 28 chr12 91674887 91675049 -29582481 - L1MC1 LINE L1 -278 6076 5916 2 1284 1180 278 51 23 chr12 91675143 91675496 -29582034 - MTE2a LTR MaLR -2 377 15 2 1284 396 244 12 0 chr12 91675509 91675595 -29581935 + PB1D10 SINE Alu 12 98 -19 2 1284 1772 79 0 4 chr12 91675596 91675837 -29581693 + L1_Mus2 LINE L1 6327 6566 0 2 1284 9885 15 2 0 chr12 91675837 91676972 -29580558 + L1Md_T LINE L1 4450 5586 -297 2 1284 8382 36 0 0 chr12 91676972 91677968 -29579562 + L1Md_T LINE L1 5587 6582 0 2 1284 252 0 93 0 chr12 91678037 91678080 -29579450 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1284 2118 279 43 63 chr12 91678083 91678278 -29579252 - L1MC1 LINE L1 -1117 5204 5017 2 1284 684 324 9 5 chr12 91678278 91678495 -29579035 - ID_B1 SINE B4 -5 219 2 2 1284 2118 279 43 63 chr12 91678495 91679403 -29578127 - L1MC1 LINE L1 -1305 5016 4123 2 1284 542 331 47 39 chr12 91679533 91679791 -29577739 - Lx8 LINE L1 -135 7338 7079 2 1284 586 272 191 27 chr12 91679801 91680251 -29577279 - L1MC1 LINE L1 -2196 4125 3602 2 1284 283 270 218 50 chr12 91680339 91680511 -29577019 - L1MC1 LINE L1 -4399 2109 1932 2 1284 294 29 0 0 chr12 91680511 91680546 -29576984 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1284 283 270 218 50 chr12 91680546 91680872 -29576658 - L1MC1 LINE L1 -4577 1931 1528 2 1284 1011 68 0 0 chr12 91681093 91681225 -29576305 + B1_Mm SINE Alu 7 138 -9 2 1284 343 19 18 53 chr12 91681225 91681282 -29576248 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2 1284 907 220 13 18 chr12 91681377 91681595 -29575935 + B3A SINE B2 2 210 -6 2 1284 419 362 53 13 chr12 91681775 91681926 -29575604 + RSINE1 SINE B4 2 158 -7 2 1284 5369 58 1 1 chr12 91682166 91682844 -29574686 + L1_Mm LINE L1 4968 5645 -238 2 1284 311 333 46 115 chr12 91682844 91683166 -29574364 + MLT1C LTR MaLR 56 362 -28 2 1284 257 324 48 27 chr12 91683394 91683540 -29573990 + B1F SINE Alu 1 149 0 2 1284 363 145 0 0 chr12 91684154 91684223 -29573307 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1284 2038 238 13 19 chr12 91685183 91685658 -29571872 + RLTR16 LTR ERVK 7 478 -27 2 1284 3014 68 0 10 chr12 91685871 91686271 -29571259 - MTA_Mm LTR MaLR 0 396 1 2 1284 705 264 130 32 chr12 91686320 91686567 -29570963 - B4A SINE B4 -17 275 5 2 1284 640 235 14 22 chr12 91686648 91686787 -29570743 + RSINE1 SINE B4 2 139 -26 2 1284 594 41 0 0 chr12 91687794 91687867 -29569663 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 1284 493 340 62 20 chr12 91688359 91688554 -29568976 + B4 SINE B4 2 204 -88 2 1284 23 33 0 0 chr12 91689199 91689229 -29568301 + AT_rich Low_complexity Low_complexity 1 30 0 2 1284 297 0 0 0 chr12 91690087 91690120 -29567410 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1284 32 26 0 0 chr12 91690122 91690161 -29567369 + AT_rich Low_complexity Low_complexity 1 39 0 2 1284 29 0 0 0 chr12 91690238 91690267 -29567263 + AT_rich Low_complexity Low_complexity 1 29 0 2 1284 180 158 0 0 chr12 91690267 91690305 -29567225 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1284 225 310 69 10 chr12 91691117 91691218 -29566312 + MIRb SINE MIR 54 160 -108 2 1284 195 100 0 0 chr12 91691253 91691283 -29566247 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 3 1284 2538 206 21 26 chr12 91691289 91691818 -29565712 - RMER5 LTR ERV1 -8 526 1 3 1284 1655 165 16 13 chr12 91692816 91693123 -29564407 + Lx LINE L1 6342 6649 -5 3 1284 594 41 0 0 chr12 91693162 91693235 -29564295 + (GAGAA)n Simple_repeat Simple_repeat 4 76 0 3 1284 573 15 0 0 chr12 91694008 91694074 -29563456 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1284 1293 219 12 44 chr12 91694084 91694404 -29563126 + Lx9 LINE L1 7020 7329 -315 3 1284 891 187 53 41 chr12 91694556 91694638 -29562892 + Lx9 LINE L1 7386 7474 -170 3 1284 2202 141 3 0 chr12 91694638 91694964 -29562566 - ORR1A2 LTR MaLR 0 327 1 3 1284 891 187 53 41 chr12 91694964 91695126 -29562404 + Lx9 LINE L1 7475 7633 -11 3 1284 198 0 0 0 chr12 91695126 91695148 -29562382 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1284 315 277 36 0 chr12 91695317 91695400 -29562130 - B1F2 SINE Alu -12 137 52 3 1284 1146 224 131 20 chr12 91696195 91696584 -29560946 + RMER15 LTR ERVL 27 557 -18 3 1284 269 299 193 27 chr12 91696816 91696939 -29560591 + L1MEc LINE L1 1714 1858 -4542 3 1284 441 0 0 0 chr12 91696939 91696988 -29560542 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1284 269 299 193 27 chr12 91696988 91697116 -29560414 + L1MEc LINE L1 1859 2014 -4386 3 1284 324 0 0 0 chr12 91697116 91697152 -29560378 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1284 269 299 193 27 chr12 91697152 91697267 -29560263 + L1MEc LINE L1 2015 2141 -4259 3 1284 238 26 51 0 chr12 91697828 91697867 -29559663 + (GTTTG)n Simple_repeat Simple_repeat 5 45 0 3 1284 228 35 0 0 chr12 91697873 91697902 -29559628 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1284 789 342 32 53 chr12 91697932 91698364 -29559166 + MT2A LTR ERVL 3 425 -108 3 1284 2308 156 53 18 chr12 91699111 91699510 -29558020 + MTC LTR MaLR 1 413 -8 3 1284 613 270 36 16 chr12 91699581 91699773 -29557757 - Lx8 LINE L1 -578 6895 6700 3 1284 183 100 0 0 chr12 91700811 91700841 -29556689 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1284 387 0 0 0 chr12 91700841 91700884 -29556646 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1284 263 104 20 59 chr12 91700940 91700991 -29556539 - B3 SINE B2 -163 53 5 3 1284 300 340 11 0 chr12 91700990 91701084 -29556446 - MLT1J LTR MaLR -329 183 89 3 1284 283 254 0 0 chr12 91701748 91701803 -29555727 + PB1 SINE Alu 19 73 -54 3 1284 198 111 54 36 chr12 91701837 91701893 -29555637 + A-rich Low_complexity Low_complexity 4 60 0 3 1284 2752 42 0 68 chr12 91702313 91702698 -29554832 - RLTR10B2 LTR ERVK -6 359 1 3 1284 287 337 93 11 chr12 91702707 91702923 -29554607 - MLT1G3 LTR MaLR -243 352 74 3 1284 1801 312 45 150 chr12 91703208 91704460 -29553070 - MLT1G3-int LTR MaLR -252 1157 38 3 1284 190 389 0 0 chr12 91705028 91705082 -29552448 - MIRb SINE MIR -198 70 17 3 1284 1025 267 47 89 chr12 91706272 91706654 -29550876 + MTE2a LTR MaLR 1 366 -13 3 1284 394 382 58 78 chr12 91707208 91707552 -29549978 + LTR78 LTR ERV1 554 890 -414 3 1284 300 137 0 0 chr12 91707554 91707605 -29549925 + (TTC)n Simple_repeat Simple_repeat 2 52 0 3 1284 304 373 49 9 chr12 91707907 91708156 -29549374 + MIRb SINE MIR 2 268 0 3 1284 254 382 39 59 chr12 91708329 91708482 -29549048 - AmnSINE1 SINE SINE -160 415 266 3 1284 7290 158 33 2 chr12 91709326 91710554 -29546976 + Lx2B LINE L1 5730 6996 -4 3 1284 275 261 77 52 chr12 91710906 91711195 -29546335 - L1M5 LINE L1 -753 5420 5129 3 1284 360 0 0 0 chr12 91711387 91711427 -29546103 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1284 233 259 75 55 chr12 91711890 91712090 -29545440 + L1_Mur2 LINE L1 4728 4931 -946 3 1284 2173 77 54 3 chr12 91712167 91712480 -29545050 - L1_Mus3 LINE L1 -6 6632 6304 3 1284 368 316 61 0 chr12 91712805 91712903 -29544627 + B3 SINE B2 23 126 -90 3 1284 8809 142 31 17 chr12 91712915 91715200 -29542330 + Lx2 LINE L1 351 3757 -2129 3 1284 36912 28 2 7 chr12 91715195 91720390 -29537140 + L1Md_A LINE L1 423 5586 -297 3 1284 8077 35 20 0 chr12 91720390 91721366 -29536164 + L1Md_A LINE L1 5587 6582 0 3 1284 1533 144 8 0 chr12 91721366 91721622 -29535908 + Lx2 LINE L1 3740 3997 -1889 3 1284 3551 156 5 0 chr12 91721616 91722214 -29535316 - L1_Mur1 LINE L1 -837 5049 4449 3 1284 7795 156 19 7 chr12 91722217 91723715 -29533815 + Lx2 LINE L1 5485 6997 0 3 1284 473 226 19 19 chr12 91723754 91723858 -29533672 + B3 SINE B2 112 215 -1 3 1284 311 342 139 0 chr12 91724164 91724366 -29533164 - MLT1C LTR MaLR -237 230 1 3 1284 1095 80 0 0 chr12 91724369 91724520 -29533010 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 3 1284 786 149 22 22 chr12 91724520 91724657 -29532873 - B1_Mus1 SINE Alu -1 147 11 3 1284 444 336 14 7 chr12 91724726 91724864 -29532666 - ID_B1 SINE B4 -5 219 81 3 1284 427 329 47 0 chr12 91725123 91725272 -29532258 + MER5A DNA MER1_type 4 159 -30 3 1284 374 355 76 25 chr12 91725302 91725539 -29531991 + MIR SINE MIR 11 259 -3 3 1284 1376 252 15 35 chr12 91725550 91725872 -29531658 + MT2A LTR ERVL 156 576 -25 3 1284 459 35 0 0 chr12 91725872 91725929 -29531601 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1284 323 289 148 29 chr12 91725929 91725954 -29531576 + MT2A LTR ERVL 577 601 0 3 1284 528 278 53 0 chr12 91726840 91726973 -29530557 - RSINE1 SINE B4 -22 143 4 3 1284 530 291 48 31 chr12 91727061 91727352 -29530178 - L1MEb LINE L1 -1117 5029 4734 3 1284 741 276 14 5 chr12 91727565 91727776 -29529754 - B3 SINE B2 0 216 4 3 1284 362 352 40 10 chr12 91727984 91728182 -29529348 - L1MEb LINE L1 -5438 698 495 3 1284 3899 157 24 29 chr12 91728367 91729127 -29528403 + RMER6A LTR ERVK 1 756 0 3 1284 269 336 14 29 chr12 91729131 91729269 -29528261 - MLT1A1 LTR MaLR 0 408 273 3 1284 265 304 68 17 chr12 91729420 91729537 -29527993 - ORR1E LTR MaLR -216 143 21 3 1284 439 246 8 16 chr12 91729780 91729908 -29527622 + Lx8 LINE L1 4464 4590 -1290 3 1284 419 0 20 0 chr12 91730686 91730737 -29526793 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1284 314 58 39 0 chr12 91730740 91730792 -29526738 + (CAGAGA)n Simple_repeat Simple_repeat 2 55 0 3 1284 24 53 0 0 chr12 91730877 91730915 -29526615 + AT_rich Low_complexity Low_complexity 1 38 0 3 1284 2141 307 89 29 chr12 91731795 91734157 -29523373 + Lx8 LINE L1 4617 7123 -350 3 1284 549 0 0 0 chr12 91734282 91734343 -29523187 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1284 297 346 81 34 chr12 91734537 91734746 -29522784 + LTR85c LTR Gypsy? 10 228 -595 3 1284 649 381 45 25 chr12 91735789 91736238 -29521292 - MLT1C LTR MaLR -6 461 4 3 1284 372 43 0 0 chr12 91736530 91736576 -29520954 + (TTAG)n Simple_repeat Simple_repeat 1 46 0 3 1284 192 77 0 0 chr12 91736577 91736603 -29520927 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1284 228 209 11 44 chr12 91736704 91736794 -29520736 - RMER17C LTR ERVK -139 271 185 3 1284 516 338 107 81 chr12 91736777 91736913 -29520617 - MLT2B4 LTR ERVL -48 472 309 3 1284 934 101 20 80 chr12 91736913 91737064 -29520466 + B1_Mus1 SINE Alu 1 142 -6 3 1284 843 280 53 60 chr12 91737064 91737384 -29520146 - MLT2B4 LTR ERVL -236 320 4 3 1284 3038 40 0 3 chr12 91737588 91737961 -29519569 - L1Md_F3 LINE L1 -1 6583 6212 3 1284 2379 43 0 0 chr12 91737961 91738262 -29519268 + L1Md_F3 LINE L1 5890 6190 -394 3 1284 345 341 109 6 chr12 91739721 91739904 -29517626 - L1M5 LINE L1 -597 5527 5326 3 1284 22 0 0 0 chr12 91739995 91740017 -29517513 + AT_rich Low_complexity Low_complexity 1 22 0 3 1284 374 399 66 4 chr12 91740363 91740635 -29516895 - MLT1F LTR MaLR -33 515 227 3 1284 226 195 0 0 chr12 91741418 91741459 -29516071 + B3A SINE B2 1 41 -157 3 1284 220 217 15 91 chr12 91741459 91741484 -29516046 + B4 SINE B4 1 61 -231 3 1284 261 286 131 42 chr12 91741606 91741774 -29515756 - RLTR21 LTR ERVK -322 1250 1068 3 1284 1810 181 34 37 chr12 91741933 91742312 -29515218 - ORR1C1 LTR MaLR 0 378 1 3 1284 1217 299 34 38 chr12 91742550 91742998 -29514532 - Lx5 LINE L1 -18 7032 6587 3 1284 422 131 141 21 chr12 91743015 91743134 -29514396 + L1_Mur3 LINE L1 523 615 -7097 3 1284 1122 252 88 13 chr12 91743166 91743483 -29514047 + RMER20B LTR ERVK 12 352 -275 3 1284 2192 196 167 33 chr12 91743485 91744097 -29513433 + L1_Mur3 LINE L1 232 925 -6803 3 1284 573 181 0 0 chr12 91744094 91744199 -29513331 + L1_Mur3 LINE L1 1302 1406 -4474 3 1284 4479 230 31 49 chr12 91744198 91745399 -29512131 + Lx7 LINE L1 5597 6775 -921 3 1284 1818 241 32 103 chr12 91745393 91745731 -29511799 + Lx7 LINE L1 7010 7354 -342 3 1284 555 16 0 0 chr12 91745731 91745795 -29511735 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 3 1284 887 65 8 0 chr12 91745795 91745918 -29511612 + (TTTC)n Simple_repeat Simple_repeat 3 126 0 3 1284 1818 241 32 103 chr12 91745918 91746317 -29511213 + Lx7 LINE L1 7355 7695 -1 3 1284 351 0 0 0 chr12 91746544 91746583 -29510947 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1284 338 367 22 38 chr12 91747065 91747124 -29510406 + Tigger5 DNA MER2_type 1 56 -2350 3 1284 537 16 0 0 chr12 91747124 91747186 -29510344 + (CTTG)n Simple_repeat Simple_repeat 2 63 0 3 1284 338 367 22 38 chr12 91747186 91747310 -29510220 + Tigger5 DNA MER2_type 57 180 -2226 3 1284 513 264 53 30 chr12 91747547 91747680 -29509850 + MTEa LTR MaLR 3 138 -241 3 1284 246 128 0 0 chr12 91747691 91747730 -29509800 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1284 380 102 23 78 chr12 91747988 91748116 -29509414 + (CAGAGA)n Simple_repeat Simple_repeat 2 122 0 3 1284 569 318 40 52 chr12 91748263 91748535 -29508995 - MLT2D LTR ERVL -195 269 1 3 1284 207 266 31 0 chr12 91749322 91749386 -29508144 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1284 477 0 0 0 chr12 91749413 91749466 -29508064 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3 1284 196 324 0 14 chr12 91749469 91749538 -29507992 - MIR SINE MIR -10 252 185 3 160 3933 165 145 21 chr12 91749911 91750816 -29506714 - Lx4B LINE L1 -8 7050 6034 3 1285 841 148 118 21 chr12 91750816 91751003 -29506527 + Lx4B LINE L1 5816 6020 -1038 3 1285 314 254 90 83 chr12 91751981 91752114 -29505416 - B1F SINE Alu -15 134 1 3 1285 1513 294 39 43 chr12 91752342 91753245 -29504285 - L1MB8 LINE L1 -1 6177 5279 3 1285 234 0 0 0 chr12 91753308 91753334 -29504196 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1285 1204 61 0 0 chr12 91753334 91753482 -29504048 - B1_Mus1 SINE Alu 0 148 1 3 1285 809 175 21 0 chr12 91754060 91754203 -29503327 + B1_Mur2 SINE Alu 4 149 0 3 1285 225 94 0 0 chr12 91754308 91754340 -29503190 + (TATAA)n Simple_repeat Simple_repeat 5 36 0 3 1285 237 65 0 0 chr12 91754409 91754440 -29503090 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 3 1285 216 97 0 0 chr12 91754510 91754541 -29502989 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 4 1285 216 97 0 0 chr12 91754611 91754642 -29502888 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 4 1285 213 128 49 37 chr12 91755473 91755554 -29501976 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 4 1285 21 0 0 0 chr12 91755839 91755860 -29501670 + AT_rich Low_complexity Low_complexity 1 21 0 4 1285 617 245 78 24 chr12 91755870 91756037 -29501493 + MTE2b LTR MaLR 1 176 -203 4 1285 1967 262 119 42 chr12 91756047 91756693 -29500837 + MTE-int LTR MaLR 841 1536 -44 4 1285 584 303 142 8 chr12 91756704 91756950 -29500580 + ORR1E LTR MaLR 41 319 -40 4 1285 242 120 0 107 chr12 91756950 91756996 -29500534 + A-rich Low_complexity Low_complexity 1 38 0 4 1285 1137 68 0 7 chr12 91756996 91757144 -29500386 + B1_Mus1 SINE Alu 2 148 0 4 1285 242 120 0 107 chr12 91757144 91757181 -29500349 + A-rich Low_complexity Low_complexity 39 75 0 4 1285 2071 152 15 6 chr12 91757459 91757802 -29499728 + ORR1A1 LTR MaLR 1 346 0 4 1285 210 37 0 0 chr12 91758502 91758529 -29499001 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1285 925 168 0 7 chr12 91758535 91758685 -29498845 - B1_Mur3 SINE Alu 0 149 1 4 1285 272 271 0 63 chr12 91758767 91758830 -29498700 + MER2 DNA MER2_type 10 68 -277 4 1285 294 295 11 0 chr12 91758859 91758954 -29498576 + MER2 DNA MER2_type 129 224 -121 4 1285 3836 206 41 82 chr12 91758957 91759524 -29498006 + Lx6 LINE L1 51 567 -7161 4 1285 2137 151 60 60 chr12 91759524 91759954 -29497576 + RLTR23 LTR ERV1 1 430 0 4 1285 3836 206 41 82 chr12 91759954 91760551 -29496979 + Lx6 LINE L1 568 1168 -6560 4 1285 1533 198 3 19 chr12 91760665 91760990 -29496540 + Lx6 LINE L1 6435 6754 -706 4 1285 510 17 0 0 chr12 91760990 91761049 -29496481 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1285 276 320 62 26 chr12 91761795 91761911 -29495619 - MLT1A0 LTR MaLR -8 400 248 4 1285 370 330 89 16 chr12 91762070 91762261 -29495269 + MIR SINE MIR 58 262 0 4 1285 764 297 109 48 chr12 91762310 91762667 -29494863 + MTEa LTR MaLR 1 379 0 4 1285 2324 48 3 0 chr12 91763292 91763582 -29493948 - L1Md_F2 LINE L1 -2 6580 6290 4 1285 329 109 18 0 chr12 91763931 91763986 -29493544 + (GGA)n Simple_repeat Simple_repeat 1 56 0 4 1285 235 208 0 0 chr12 91764001 91764054 -29493476 + GA-rich Low_complexity Low_complexity 1 53 0 4 1285 215 203 0 17 chr12 91764074 91764098 -29493432 + (TGG)n Simple_repeat Simple_repeat 3 26 0 4 1285 4108 152 53 89 chr12 91764098 91765038 -29492492 + RMER17A2 LTR ERVK 1 906 0 4 1285 215 203 0 17 chr12 91765038 91765073 -29492457 + (TGG)n Simple_repeat Simple_repeat 3 37 0 4 1285 277 382 0 0 chr12 91765089 91765191 -29492339 - PB1D7 SINE Alu -16 104 3 4 1285 189 37 52 69 chr12 91765213 91765271 -29492259 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 4 1285 180 0 0 0 chr12 91765302 91765322 -29492208 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1285 492 68 0 0 chr12 91766367 91766440 -29491090 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 1285 414 0 0 0 chr12 91766440 91766486 -29491044 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1285 742 149 7 49 chr12 91766802 91767110 -29490420 + GA-rich Low_complexity Low_complexity 1 294 0 4 1285 1510 5 0 18 chr12 91767136 91767358 -29490172 + (GGAAA)n Simple_repeat Simple_repeat 1 218 0 4 1285 638 191 23 45 chr12 91768313 91768445 -29489085 + B1_Mur1 SINE Alu 18 146 -3 4 1285 1271 74 6 0 chr12 91768467 91768643 -29488887 + (GGAGAA)n Simple_repeat Simple_repeat 3 179 0 4 1285 1312 173 0 13 chr12 91770066 91770294 -29487236 + URR1B DNA MER1_type 1 225 0 4 1285 1216 250 101 67 chr12 91771325 91771801 -29485729 - RMER13A LTR ERVK -367 493 2 4 1285 422 265 88 0 chr12 91772008 91772110 -29485420 + PB1D7 SINE Alu 8 118 -2 4 1285 1005 295 148 81 chr12 91772161 91772973 -29484557 + Zaphod DNA Tip100 112 977 -3054 4 1285 311 96 0 19 chr12 91773055 91773108 -29484422 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1285 229 292 27 14 chr12 91773418 91773491 -29484039 + MIRc SINE MIR 88 161 -107 4 1285 22 56 0 0 chr12 91773795 91773831 -29483699 + AT_rich Low_complexity Low_complexity 1 36 0 4 1285 348 64 0 0 chr12 91773836 91773883 -29483647 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1285 723 254 21 0 chr12 91773888 91774030 -29483500 - RSINE1 SINE B4 -17 148 4 4 1285 222 237 0 0 chr12 91775274 91775350 -29482180 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1285 725 234 26 74 chr12 91775350 91775539 -29481991 - B4A SINE B4 0 292 113 4 1285 1280 57 0 0 chr12 91775744 91775903 -29481627 + B2_Mm1t SINE B2 2 160 -33 4 1285 243 0 0 0 chr12 91775903 91775930 -29481600 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1285 257 280 0 0 chr12 91776167 91776217 -29481313 + B3A SINE B2 2 51 -147 4 1285 361 322 7 47 chr12 91776510 91776660 -29480870 + AmnSINE1 SINE SINE 227 370 -205 4 1285 243 386 55 18 chr12 91777304 91777523 -29480007 - MIRb SINE MIR -8 260 34 4 1285 260 250 12 24 chr12 91777578 91777660 -29479870 + GA-rich Low_complexity Low_complexity 4 84 0 4 1285 297 0 0 0 chr12 91777724 91777757 -29479773 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1285 1343 196 129 6 chr12 91778439 91778714 -29478816 + ORR1D1 LTR MaLR 1 317 -57 4 1285 279 0 0 0 chr12 91778714 91778745 -29478785 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1285 1343 196 129 6 chr12 91778745 91778802 -29478728 + ORR1D1 LTR MaLR 318 373 -1 4 1285 278 342 51 0 chr12 91778912 91779029 -29478501 - MER5A DNA MER1_type -65 124 2 4 1285 3687 53 0 0 chr12 91779534 91779988 -29477542 - L1Md_F2 LINE L1 -12 6570 6117 4 1285 5624 44 3 1 chr12 91779988 91780676 -29476854 + L1_Mm LINE L1 5013 5701 -182 4 1285 303 28 0 0 chr12 91781909 91781945 -29475585 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1285 560 108 0 18 chr12 91781945 91782058 -29475472 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 4 1285 237 65 0 0 chr12 91782549 91782580 -29474950 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 4 1285 373 253 11 0 chr12 91782848 91782935 -29474595 - B1_Mur3 SINE Alu -5 144 57 4 1285 248 203 205 51 chr12 91782888 91782966 -29474564 - MT2B2 LTR ERVL -327 257 168 4 1285 234 365 47 20 chr12 91784408 91784556 -29472974 + LTR16A LTR ERVL 93 244 -207 4 1285 268 235 25 34 chr12 91784580 91784699 -29472831 - Lx9 LINE L1 -5 7639 7522 4 1285 396 0 0 0 chr12 91784699 91784743 -29472787 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1285 695 223 81 81 chr12 91784747 91785020 -29472510 - Lx9 LINE L1 -204 7440 7168 4 1285 377 296 24 0 chr12 91785049 91785174 -29472356 + Lx7 LINE L1 986 1113 -6615 4 1285 209 33 33 0 chr12 91785196 91785226 -29472304 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1285 1329 299 48 30 chr12 91785234 91785627 -29471903 + Lx5 LINE L1 6643 7042 -8 4 1285 4870 285 41 20 chr12 91785660 91787222 -29470308 + Lx7 LINE L1 5720 7314 -382 4 1285 396 0 0 0 chr12 91787225 91787269 -29470261 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1285 248 156 25 49 chr12 91787278 91787359 -29470171 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 4 1285 360 322 97 27 chr12 91787485 91787670 -29469860 - MLT1D LTR MaLR -52 453 256 4 1285 725 289 42 5 chr12 91787771 91788032 -29469498 + L1MA4 LINE L1 5679 5946 -228 4 1285 1892 185 25 71 chr12 91788187 91788482 -29469048 + ORR1C1 LTR MaLR 1 304 -74 4 1285 3286 143 33 7 chr12 91788482 91789023 -29468507 + Lx4A LINE L1 6501 7055 -3 4 1285 1892 185 25 71 chr12 91789023 91789123 -29468407 + ORR1C1 LTR MaLR 305 378 0 4 1285 292 336 29 58 chr12 91789185 91789324 -29468206 - MLT1D LTR MaLR -368 137 3 4 1285 264 339 71 28 chr12 91789389 91789571 -29467959 + B3A SINE B2 1 190 -8 4 1285 185 267 0 22 chr12 91789602 91789648 -29467882 + MIRb SINE MIR 201 245 -23 4 1285 212 169 52 0 chr12 91790571 91790648 -29466882 + (TAGA)n Simple_repeat Simple_repeat 3 83 0 4 1285 9377 176 54 88 chr12 91792187 91793667 -29463863 + Lx7 LINE L1 3768 5265 -2431 4 1285 720 200 82 16 chr12 91793667 91793850 -29463680 + B2_Mm2 SINE B2 1 195 0 4 1285 9377 176 54 88 chr12 91793850 91795026 -29462504 + Lx7 LINE L1 5266 6458 -1238 4 1285 1281 102 32 0 chr12 91795026 91795212 -29462318 - B2_Mm2 SINE B2 -2 193 2 4 1285 4080 227 39 86 chr12 91795212 91795458 -29462072 + Lx7 LINE L1 6459 6732 -964 4 1285 544 332 48 0 chr12 91795643 91795914 -29461616 - L1M4 LINE L1 -3314 2832 2549 4 1285 1565 248 20 8 chr12 91795911 91796269 -29461261 - Lx7 LINE L1 -540 7156 6795 4 1285 1457 206 82 78 chr12 91796253 91796716 -29460814 + Lx7 LINE L1 7232 7696 0 4 1285 311 259 261 7 chr12 91796876 91797148 -29460382 + L1M2 LINE L1 4989 5329 -814 4 1285 711 253 22 22 chr12 91797151 91797329 -29460201 + ID_B1 SINE B4 8 185 -39 4 1285 2926 47 0 8 chr12 91797329 91797698 -29459832 + L1Md_F2 LINE L1 6217 6582 0 4 1285 679 245 56 0 chr12 91797745 91797888 -29459642 + B3A SINE B2 1 151 -47 4 1285 24 0 0 0 chr12 91797895 91797919 -29459611 + AT_rich Low_complexity Low_complexity 1 24 0 4 1285 978 76 0 0 chr12 91797937 91798069 -29459461 + (GGAA)n Simple_repeat Simple_repeat 1 132 0 4 1285 319 262 51 31 chr12 91798070 91798268 -29459262 + L1M2 LINE L1 5417 5623 -551 4 1285 589 292 71 58 chr12 91798498 91798723 -29458807 + Charlie1a DNA MER1_type 1 228 -1227 4 1285 1320 254 14 66 chr12 91798726 91799088 -29458442 - MTEa LTR MaLR -28 351 9 4 1285 216 67 0 0 chr12 91799096 91799126 -29458404 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1285 265 268 0 53 chr12 91799536 91799611 -29457919 - ID_B1 SINE B4 -8 216 146 4 1285 360 311 136 45 chr12 91799669 91799757 -29457773 + L1ME1 LINE L1 4664 4750 -1396 4 1285 4452 10 0 0 chr12 91799757 91800250 -29457280 + MT2_Mm LTR ERVL 1 493 0 4 1285 466 308 118 35 chr12 91800250 91801029 -29456501 + L1ME1 LINE L1 4751 5607 -837 4 1285 908 52 15 15 chr12 91801090 91801227 -29456303 + (TTC)n Simple_repeat Simple_repeat 1 137 0 4 1285 417 86 0 0 chr12 91801227 91801285 -29456245 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 4 1285 459 52 0 0 chr12 91801281 91801339 -29456191 + (TCC)n Simple_repeat Simple_repeat 3 60 0 4 1285 225 287 76 45 chr12 91801536 91801693 -29455837 + L1ME1 LINE L1 5964 6125 -54 4 1285 285 316 13 0 chr12 91801781 91801860 -29455670 - PB1 SINE Alu -47 80 1 4 1285 444 174 0 0 chr12 91802087 91802208 -29455322 + A-rich Low_complexity Low_complexity 1 121 0 4 1285 2492 125 42 48 chr12 91802974 91803452 -29454078 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1285 546 210 65 7 chr12 91803499 91803638 -29453892 - Lx4A LINE L1 -1 7057 6911 5 1285 623 277 45 13 chr12 91804302 91804459 -29453071 + RSINE1 SINE B4 2 163 -2 5 1285 279 0 0 0 chr12 91804469 91804500 -29453030 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1285 246 324 0 0 chr12 91804727 91804798 -29452732 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1285 450 0 0 0 chr12 91804798 91804848 -29452682 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1285 238 359 40 81 chr12 91805682 91805855 -29451675 + MIRb SINE MIR 68 233 -35 5 1285 234 395 97 0 chr12 91806718 91806832 -29450698 - MIR SINE MIR -137 125 1 5 1285 542 268 69 19 chr12 91807739 91807833 -29449697 - RLTR20C LTR ERVK 0 568 477 5 1285 261 0 0 0 chr12 91807833 91807862 -29449668 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1285 881 235 358 82 chr12 91807862 91808228 -29449302 - RLTR20C LTR ERVK -92 476 4 5 1285 315 0 0 0 chr12 91808246 91808281 -29449249 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1285 297 0 0 0 chr12 91808281 91808313 -29449217 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1285 5318 139 55 15 chr12 91808317 91809327 -29448203 - MYSERV16_I-int LTR ERVK -21 2305 1255 5 1285 889 200 55 43 chr12 91809329 91809669 -29447861 - MYSERV16_I-int LTR ERVK -1464 1378 1112 5 1285 1126 227 55 67 chr12 91810345 91810812 -29446718 - RLTR20C LTR ERVK -4 564 3 5 1285 758 280 21 11 chr12 91810835 91811026 -29446504 - MTE2b LTR MaLR -182 197 5 5 1285 237 108 0 0 chr12 91811125 91811162 -29446368 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1285 336 294 113 75 chr12 91811820 91812033 -29445497 - L1MC4 LINE L1 -5 8037 7817 5 1285 189 74 0 0 chr12 91813284 91813311 -29444219 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1285 310 282 187 46 chr12 91813408 91813713 -29443817 + L1M5 LINE L1 2480 2827 -3319 5 1285 227 203 0 17 chr12 91814288 91814348 -29443182 + (TTA)n Simple_repeat Simple_repeat 2 60 0 5 1285 376 315 125 55 chr12 91815081 91815353 -29442177 + B4A SINE B4 2 292 0 5 1285 535 229 13 7 chr12 91815367 91815521 -29442009 + (TATG)n Simple_repeat Simple_repeat 2 156 0 5 1285 311 150 0 16 chr12 91815601 91815662 -29441868 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1285 28 79 0 0 chr12 91816222 91816285 -29441245 + AT_rich Low_complexity Low_complexity 1 63 0 5 1285 421 273 41 205 chr12 91816859 91817103 -29440427 + MLT2B2 LTR ERVL 347 550 -6 5 1285 336 277 14 35 chr12 91817114 91817256 -29440274 + L1M4 LINE L1 3205 3343 -2803 5 1285 327 301 50 50 chr12 91817411 91817572 -29439958 + RSINE1 SINE B4 3 163 -2 5 1285 258 213 49 0 chr12 91817601 91817662 -29439868 + L1M4 LINE L1 3498 3561 -2585 5 1285 258 248 229 28 chr12 91817749 91818002 -29439528 + L1M4 LINE L1 3698 4001 -2145 5 1285 263 335 144 48 chr12 91818928 91819116 -29438414 - B3 SINE B2 -9 207 2 5 1285 24 0 0 0 chr12 91819121 91819145 -29438385 + AT_rich Low_complexity Low_complexity 1 24 0 5 1285 457 319 96 36 chr12 91819632 91819798 -29437732 + B3 SINE B2 39 214 -2 5 1285 2191 323 48 12 chr12 91820168 91820980 -29436550 + Lx8 LINE L1 6469 7309 -164 5 1285 477 34 0 0 chr12 91821467 91821526 -29436004 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 5 1285 1306 56 6 11 chr12 91821526 91821707 -29435823 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1285 470 61 15 0 chr12 91821708 91821774 -29435756 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 5 1285 206 269 14 56 chr12 91823779 91823850 -29433680 + L2a LINE L2 3349 3416 -10 5 1285 22 35 0 0 chr12 91824584 91824613 -29432917 + AT_rich Low_complexity Low_complexity 1 29 0 5 1285 529 271 0 16 chr12 91824932 91825056 -29432474 + Lx8 LINE L1 7071 7192 -281 5 1285 346 250 82 69 chr12 91825056 91825215 -29432315 + Lx8 LINE L1 7309 7469 -4 5 1285 282 163 0 0 chr12 91825402 91825445 -29432085 - ORR1C1 LTR MaLR 0 378 336 5 1285 420 130 0 0 chr12 91825721 91825790 -29431740 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1285 1210 178 22 70 chr12 91827251 91827608 -29429922 + Lx7 LINE L1 7357 7696 0 5 1285 468 279 21 35 chr12 91827757 91827898 -29429632 - B4A SINE B4 -144 148 10 5 1285 459 0 0 0 chr12 91828747 91828798 -29428732 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1285 203 238 0 0 chr12 91829601 91829643 -29427887 - MIRc SINE MIR -113 155 114 5 1285 287 315 189 15 chr12 91829740 91829946 -29427584 + B4 SINE B4 5 246 -46 5 1285 219 69 0 0 chr12 91829946 91829975 -29427555 + (GGA)n Simple_repeat Simple_repeat 2 30 0 5 1285 459 165 0 10 chr12 91830327 91830425 -29427105 + Lx3A LINE L1 6871 6967 -14 5 1285 4904 105 18 12 chr12 91830427 91831162 -29426368 + Lx LINE L1 5906 6644 -10 5 1285 484 261 74 104 chr12 91831463 91831694 -29425836 + ID_B1 SINE B4 1 224 0 5 1285 869 130 0 42 chr12 91832077 91832221 -29425309 + B1_Mus2 SINE Alu 9 146 -1 5 1285 1930 100 3 14 chr12 91832382 91832666 -29424864 + ORR1A2 LTR MaLR 1 281 -46 5 1285 1193 185 28 137 chr12 91832666 91833060 -29424470 - RMER16 LTR ERVK 0 533 183 5 1285 428 129 88 10 chr12 91833043 91833190 -29424340 + ORR1A2 LTR MaLR 238 406 -1 5 1285 3258 147 11 31 chr12 91833502 91834055 -29423475 + RLTR1D LTR ERV1 64 605 0 5 1285 211 0 28 56 chr12 91834757 91834793 -29422737 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1285 282 29 0 0 chr12 91835066 91835101 -29422429 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1285 185 286 0 20 chr12 91835909 91835959 -29421571 - L3 LINE CR1 -2358 2131 2083 5 1285 2505 225 55 3 chr12 91836592 91837159 -29420371 - Lx6 LINE L1 -345 7115 6520 5 1285 972 199 12 6 chr12 91837159 91837331 -29420199 - MTD LTR MaLR -234 185 13 5 1285 290 322 39 60 chr12 91837284 91837350 -29420180 - MT2A LTR ERVL -353 180 3 5 1285 546 235 9 9 chr12 91837350 91837466 -29420064 - MTE2a LTR MaLR -261 118 3 5 1285 482 270 96 145 chr12 91837659 91838053 -29419477 + MTE2a LTR MaLR 1 375 -4 5 1285 343 354 116 43 chr12 91838139 91838440 -29419090 - MLT1A0 LTR MaLR -42 323 1 5 1285 1281 83 0 0 chr12 91838506 91838686 -29418844 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1285 1083 89 0 0 chr12 91838702 91838881 -29418649 + (GAA)n Simple_repeat Simple_repeat 2 180 0 5 1285 384 22 0 0 chr12 91838881 91838926 -29418604 + (CAA)n Simple_repeat Simple_repeat 1 45 0 5 1285 453 375 43 30 chr12 91839380 91839682 -29417848 + MLT1K LTR MaLR 281 586 -9 5 1285 293 62 0 20 chr12 91840449 91840498 -29417032 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 5 1285 2466 184 70 2 chr12 91840634 91841416 -29416114 - Lx5 LINE L1 -372 6678 5780 5 1285 9427 82 14 11 chr12 91841423 91843103 -29414427 - Lx3_Mus LINE L1 -5 7004 5320 5 1285 2196 26 0 0 chr12 91844148 91844417 -29413113 - L1Md_T LINE L1 -637 5945 5677 5 1285 3968 83 0 0 chr12 91844417 91844945 -29412585 + L1Md_T LINE L1 6055 6582 0 5 1285 784 191 6 6 chr12 91844993 91845167 -29412363 + GA-rich Low_complexity Low_complexity 3 176 0 5 1285 498 274 0 0 chr12 91845215 91845332 -29412198 + ID_B1 SINE B4 103 219 -5 5 1285 198 143 0 0 chr12 91845427 91845462 -29412068 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 1285 933 190 97 5 chr12 91845749 91845955 -29411575 - URR1B DNA MER1_type 0 225 1 5 1285 402 21 0 0 chr12 91846272 91846319 -29411211 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1285 493 187 38 34 chr12 91848581 91849034 -29408496 + (TCTA)n Simple_repeat Simple_repeat 1 455 0 5 1285 21 57 0 0 chr12 91849718 91849753 -29407777 + AT_rich Low_complexity Low_complexity 1 35 0 5 1285 425 305 68 22 chr12 91849828 91850106 -29407424 + B4A SINE B4 2 292 0 5 1285 24 0 0 0 chr12 91851022 91851046 -29406484 + AT_rich Low_complexity Low_complexity 1 24 0 5 1285 704 313 40 20 chr12 91851051 91851250 -29406280 + B3 SINE B2 3 205 -11 5 1285 853 269 65 97 chr12 91853015 91853477 -29404053 + Lx8 LINE L1 6967 7413 -60 5 1285 3741 206 39 8 chr12 91853920 91854682 -29402848 + Lx5 LINE L1 6245 7030 -20 5 1285 8423 107 39 16 chr12 91855353 91855370 -29402160 - Lx3A LINE L1 0 6981 6970 5 1285 315 71 0 0 chr12 91855370 91855412 -29402118 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 5 1285 8423 105 23 21 chr12 91855412 91857449 -29400081 - Lx3A LINE L1 -12 6969 4919 5 1285 227 350 89 10 chr12 91857475 91857576 -29399954 + PB1D10 SINE Alu 1 109 -8 5 1285 4683 60 3 0 chr12 91857589 91858209 -29399321 + L1Md_F2 LINE L1 4965 5586 -297 5 1285 7907 42 29 0 chr12 91858210 91858237 -29399293 + L1Md_F2 LINE L1 5588 5614 -968 5 1285 522 0 0 0 chr12 91858237 91858295 -29399235 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1285 7907 42 29 0 chr12 91858295 91859232 -29398298 + L1Md_F2 LINE L1 5615 6578 -4 5 1285 342 351 123 89 chr12 91860027 91860230 -29397300 + Tigger7 DNA MER2_type 5 214 -2277 5 1285 255 304 13 0 chr12 91860249 91860328 -29397202 + Tigger7 DNA MER2_type 326 405 -2086 5 1285 2523 270 72 75 chr12 91860338 91860976 -29396554 + Lx6 LINE L1 6396 7093 -367 5 1285 520 131 18 18 chr12 91860976 91861085 -29396445 + Lx6 LINE L1 7337 7445 -15 5 1285 287 208 56 0 chr12 91861089 91861161 -29396369 + Tigger7 DNA MER2_type 434 509 -1982 5 1285 2523 270 72 75 chr12 91861161 91861467 -29396063 + Lx6 LINE L1 7098 7412 -48 5 1285 437 271 116 0 chr12 91861467 91861622 -29395908 + Tigger7 DNA MER2_type 398 570 -1921 5 1285 207 0 0 0 chr12 91861624 91861647 -29395883 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1285 26 0 0 0 chr12 91861710 91861736 -29395794 + AT_rich Low_complexity Low_complexity 1 26 0 5 1285 24 0 0 0 chr12 91862396 91862420 -29395110 + AT_rich Low_complexity Low_complexity 1 24 0 5 1285 195 42 0 0 chr12 91862751 91862775 -29394755 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1285 5897 219 76 49 chr12 91862975 91864756 -29392774 - Lx7 LINE L1 0 7696 5868 5 1285 1708 222 27 5 chr12 91864751 91865153 -29392377 - L1_Mur3 LINE L1 -115 5765 5355 5 1285 628 301 15 16 chr12 91865201 91865467 -29392063 - Lx6 LINE L1 -656 6402 6092 5 1285 1871 197 45 15 chr12 91865462 91865930 -29391600 - L1_Mur3 LINE L1 -7191 537 56 5 1285 26 64 0 0 chr12 91865931 91865978 -29391552 + AT_rich Low_complexity Low_complexity 1 47 0 5 1285 297 347 16 95 chr12 91866356 91866598 -29390932 + L2 LINE L2 2858 3080 -339 5 1285 1195 319 68 32 chr12 91866714 91867436 -29390094 + Lx8 LINE L1 6475 7222 -251 5 1285 6986 137 8 3 chr12 91867759 91869800 -29387730 + Lx LINE L1 4598 6650 -4 5 1285 237 159 0 0 chr12 91869844 91869888 -29387642 + (CTTG)n Simple_repeat Simple_repeat 1 44 0 6 1285 613 319 166 32 chr12 91869900 91870311 -29387219 - Charlie13a DNA Charlie -1040 474 9 6 1285 245 406 24 19 chr12 91870313 91870519 -29387011 + MIRc SINE MIR 25 231 -37 6 1285 22 56 0 0 chr12 91871137 91871173 -29386357 + AT_rich Low_complexity Low_complexity 1 36 0 6 1285 306 50 0 0 chr12 91871316 91871356 -29386174 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1285 425 115 0 11 chr12 91871358 91871446 -29386084 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1285 476 212 92 7 chr12 91872654 91872806 -29384724 - L1MA5 LINE L1 -4 6296 6132 6 1285 23 0 0 0 chr12 91872824 91872847 -29384683 + AT_rich Low_complexity Low_complexity 1 23 0 6 1285 7125 22 6 4 chr12 91872882 91873702 -29383828 + RLTR13B2 LTR ERVK 1 822 0 6 1285 780 82 0 0 chr12 91873790 91873912 -29383618 + (GA)n Simple_repeat Simple_repeat 1 122 0 6 1285 928 324 18 13 chr12 91873976 91874364 -29383166 - Lx7 LINE L1 -393 7303 6914 6 1285 183 189 0 51 chr12 91875429 91875468 -29382062 - L3 LINE CR1 -398 4091 4055 6 1285 340 375 50 6 chr12 91875739 91875900 -29381630 - MLT1H2 LTR MaLR -300 189 22 6 1285 1549 190 80 8 chr12 91876397 91876748 -29380782 - ORR1C1 LTR MaLR -2 376 1 6 1285 270 312 0 12 chr12 91877405 91877486 -29380044 - L2a LINE L2 -7 3419 3340 6 1285 24 0 0 0 chr12 91877989 91878013 -29379517 + AT_rich Low_complexity Low_complexity 1 24 0 6 1285 230 353 19 29 chr12 91878188 91878293 -29379237 - L2c LINE L2 -11 3376 3273 6 1285 225 291 12 12 chr12 91878768 91878848 -29378682 + MTEa LTR MaLR 300 379 0 6 1285 328 308 0 0 chr12 91879062 91879140 -29378390 + MER21B LTR ERV1 19 96 -767 6 1285 253 376 10 0 chr12 91879262 91879363 -29378167 + MER21B LTR ERV1 275 376 -487 6 1285 739 305 82 32 chr12 91879546 91879861 -29377669 - MLT1A0 LTR MaLR -32 333 3 6 1286 985 150 37 37 chr12 91881865 91882052 -29375478 + B2_Mm2 SINE B2 1 187 -8 6 1286 803 277 57 9 chr12 91883228 91883545 -29373985 + Lx7 LINE L1 5593 5924 -1772 6 1286 306 280 33 94 chr12 91884799 91884827 -29372703 - CYRA11_Mm Unknown Y-chromosome -200 417 403 6 1286 1101 218 0 9 chr12 91884827 91885040 -29372490 + URR1A DNA MER1_type 1 211 -15 6 1286 443 276 14 139 chr12 91884983 91885117 -29372413 - B4 SINE B4 -95 197 87 6 1286 189 74 0 0 chr12 91885117 91885144 -29372386 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1286 448 233 0 13 chr12 91885144 91885232 -29372298 - B4A SINE B4 -204 88 3 6 1286 299 286 40 85 chr12 91885613 91885789 -29371741 + L2 LINE L2 1850 2017 -1402 6 1286 597 28 0 0 chr12 91885963 91886034 -29371496 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 6 1286 805 290 62 22 chr12 91886135 91886410 -29371120 - B4A SINE B4 -4 288 3 6 1286 2795 205 42 39 chr12 91886455 91887073 -29370457 - RMER20B LTR ERVK -7 620 1 6 1286 322 151 0 0 chr12 91887647 91887700 -29369830 - HAL1-3A_ME LINE L1 -830 2028 1976 6 1286 885 136 26 13 chr12 91887747 91888030 -29369500 + CT-rich Low_complexity Low_complexity 1 286 0 6 1286 312 91 0 0 chr12 91888239 91888283 -29369247 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1286 297 51 0 0 chr12 91888284 91888323 -29369207 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 6 1286 437 306 122 52 chr12 91888431 91888758 -29368772 + MLT1C LTR MaLR 118 467 0 6 1286 260 111 22 0 chr12 91888783 91888828 -29368702 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 6 1286 205 317 0 79 chr12 91889616 91889705 -29367825 - MIRc SINE MIR -58 210 129 6 1286 290 324 142 0 chr12 91889820 91889968 -29367562 - MIR SINE MIR -10 252 84 6 1286 1570 249 40 6 chr12 91891037 91891384 -29366146 - ORR1D2 LTR MaLR -3 367 9 6 1286 240 375 0 54 chr12 91891467 91891560 -29365970 + PB1D10 SINE Alu 4 91 -26 6 1286 389 344 15 15 chr12 91891828 91891961 -29365569 + B1F SINE Alu 1 133 -16 6 1286 434 17 0 33 chr12 91891961 91892021 -29365509 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 6 1286 23 33 0 0 chr12 91892982 91893012 -29364518 + AT_rich Low_complexity Low_complexity 1 30 0 6 1286 28 0 0 0 chr12 91893215 91893243 -29364287 + AT_rich Low_complexity Low_complexity 1 28 0 6 1286 546 357 20 15 chr12 91893854 91894056 -29363474 - B4 SINE B4 -6 286 84 6 1286 6571 91 12 2 chr12 91895373 91896712 -29360818 + L1_Mus2 LINE L1 4883 6240 -326 6 1286 523 60 24 0 chr12 91896714 91896798 -29360732 + L1_Mus3 LINE L1 6553 6638 0 6 1286 26 101 0 0 chr12 91897288 91897377 -29360153 + AT_rich Low_complexity Low_complexity 1 89 0 6 1286 215 56 56 0 chr12 91898148 91898184 -29359346 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 6 1286 613 308 78 51 chr12 91898221 91898591 -29358939 - Lx9 LINE L1 -264 7380 7001 6 1286 413 279 0 16 chr12 91898590 91898714 -29358816 + Lx9 LINE L1 6898 7019 -625 6 1286 274 341 81 11 chr12 91899404 91899578 -29357952 - MIR SINE MIR -78 190 5 6 1286 1206 48 29 12 chr12 91899749 91899919 -29357611 - L1Md_F3 LINE L1 -2 6582 6410 6 1286 9787 19 2 0 chr12 91900046 91901182 -29356348 + L1Md_T LINE L1 4449 5586 -297 6 1286 8360 34 0 0 chr12 91901182 91902174 -29355356 + L1Md_T LINE L1 5587 6578 -4 6 1286 253 122 49 0 chr12 91903516 91903557 -29353973 - Lx3A LINE L1 -593 6388 6346 6 1286 264 302 61 45 chr12 91903741 91903873 -29353657 + RLTR22_Mur LTR ERVK 1234 1367 -481 6 1286 244 208 0 36 chr12 91903873 91903928 -29353602 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 6 1286 6787 117 37 14 chr12 91905791 91907125 -29350405 - Lx LINE L1 0 6654 5288 6 1286 5051 37 0 0 chr12 91907312 91907909 -29349621 - L1Md_T LINE L1 0 6582 5986 6 1286 2352 18 0 0 chr12 91907909 91908184 -29349346 + L1Md_T LINE L1 5711 5985 -597 6 1286 2390 157 11 2 chr12 91908180 91908613 -29348917 - L1_Mur2 LINE L1 -579 5298 4862 6 1286 2617 135 19 2 chr12 91908614 91909046 -29348484 + L1_Mur2 LINE L1 4388 4826 -1051 6 1286 1500 40 40 0 chr12 91909827 91910027 -29347503 + L1Md_F3 LINE L1 6376 6583 -1 6 1286 3375 72 0 0 chr12 91910042 91910474 -29347056 - L1Md_F2 LINE L1 -367 6215 5784 6 1286 1528 83 0 23 chr12 91910474 91910695 -29346835 - L1Md_F2 LINE L1 -12 6570 6355 6 1286 333 275 15 44 chr12 91910695 91910716 -29346814 - L1MA4A LINE L1 -486 5817 5798 6 1286 8010 57 0 2 chr12 91910798 91912260 -29345270 - L1Md_F2 LINE L1 -14 6568 5109 6 1286 2235 64 14 0 chr12 91912260 91912555 -29344975 + L1_Mus1 LINE L1 6269 6567 0 6 1286 3069 43 0 0 chr12 91912763 91913133 -29344397 - L1Md_F2 LINE L1 -625 5957 5588 6 1286 524 130 93 0 chr12 91913141 91913249 -29344281 + L1Md_F2 LINE L1 6462 6579 -3 6 1286 30 27 0 0 chr12 91913249 91913286 -29344244 + AT_rich Low_complexity Low_complexity 1 37 0 6 1286 1114 76 14 0 chr12 91913303 91913448 -29344082 + B1_Mus1 SINE Alu 2 148 0 6 1286 223 49 49 0 chr12 91913450 91913491 -29344039 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1286 33 56 0 0 chr12 91913581 91913635 -29343895 + AT_rich Low_complexity Low_complexity 1 54 0 6 1286 315 350 58 13 chr12 91913750 91913976 -29343554 - L1MA8 LINE L1 -386 5905 5670 6 1286 211 159 31 31 chr12 91914054 91914119 -29343411 + T-rich Low_complexity Low_complexity 1 65 0 6 1286 227 359 0 0 chr12 91914119 91914197 -29343333 - ID4_ SINE ID -1 82 5 6 1286 650 253 7 0 chr12 91914403 91914549 -29342981 + B1F2 SINE Alu 3 149 0 6 1286 26 82 0 0 chr12 91914556 91914617 -29342913 + AT_rich Low_complexity Low_complexity 1 61 0 6 1286 2708 77 0 0 chr12 91915188 91915552 -29341978 + L1Md_A LINE L1 6219 6582 0 6 1286 1093 161 0 11 chr12 91915675 91915863 -29341667 + RMER6C LTR ERVK 505 690 0 6 1286 2797 27 30 0 chr12 91915990 91916326 -29341204 + ORR1A0 LTR MaLR 1 346 0 6 1286 244 311 0 0 chr12 91916503 91916564 -29340966 + PB1D10 SINE Alu 44 104 -13 6 1286 29 0 0 0 chr12 91917167 91917196 -29340334 + AT_rich Low_complexity Low_complexity 1 29 0 6 1286 282 206 0 0 chr12 91917396 91917459 -29340071 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1286 1001 338 78 77 chr12 91917543 91918053 -29339477 - MLT2B2 LTR ERVL -3 512 2 6 1286 22 0 0 0 chr12 91918975 91918997 -29338533 + AT_rich Low_complexity Low_complexity 1 22 0 6 1286 270 239 122 22 chr12 91918999 91919089 -29338441 + RMER15 LTR ERVL 1 99 -476 6 1286 229 294 39 116 chr12 91919089 91919270 -29338260 + RMER15 LTR ERVL 55 221 -354 6 1286 348 338 36 0 chr12 91919285 91919424 -29338106 + RMER15 LTR ERVL 429 572 -3 6 1286 21 71 0 0 chr12 91919813 91919855 -29337675 + AT_rich Low_complexity Low_complexity 1 42 0 6 1286 21 0 0 0 chr12 91919928 91919949 -29337581 + AT_rich Low_complexity Low_complexity 1 21 0 6 1286 408 125 0 0 chr12 91920406 91920470 -29337060 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1286 409 328 83 99 chr12 91920762 91921137 -29336393 - HAL1 LINE L1 -594 1913 1545 6 1286 262 277 123 25 chr12 91921953 91922075 -29335455 + MER5A1 DNA MER1_type 2 135 -31 6 1286 561 321 62 16 chr12 91922161 91922481 -29335049 - L1MC4a LINE L1 -1340 6542 6208 6 1286 408 326 158 0 chr12 91922644 91922840 -29334690 + Lx8 LINE L1 7141 7367 -106 6 1286 234 291 0 0 chr12 91923279 91923334 -29334196 + Lx9 LINE L1 6831 6885 -759 6 1286 486 88 0 0 chr12 91923335 91923403 -29334127 + (CTA)n Simple_repeat Simple_repeat 1 68 0 6 1286 267 103 0 0 chr12 91923403 91923442 -29334088 + (TAA)n Simple_repeat Simple_repeat 3 41 0 6 1286 1327 295 35 39 chr12 91923484 91924027 -29333503 + Lx9 LINE L1 6930 7470 -174 6 1286 3713 45 23 17 chr12 91924114 91924593 -29332937 - L1Md_F2 LINE L1 -1 6581 6100 6 1286 260 53 0 26 chr12 91924713 91924752 -29332778 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1286 21 71 0 0 chr12 91924771 91924813 -29332717 + AT_rich Low_complexity Low_complexity 1 42 0 6 1286 324 188 0 0 chr12 91925226 91925290 -29332240 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1286 295 242 91 0 chr12 91925453 91925519 -29332011 + B1_Mur2 SINE Alu 67 138 -11 6 1286 207 0 0 0 chr12 91925535 91925558 -29331972 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1286 708 267 49 15 chr12 91925840 91926045 -29331485 - B3 SINE B2 -4 212 1 7 1286 209 341 11 23 chr12 91926257 91926344 -29331186 - L4 LINE RTE -229 1800 1715 7 1286 39743 22 0 7 chr12 91926352 91932368 -29325162 - L1Md_A LINE L1 -1 6581 615 7 1286 643 166 114 54 chr12 91932368 91932534 -29324996 + RMER16 LTR ERVK 234 409 -124 7 1286 2303 60 0 0 chr12 91933111 91933393 -29324137 - L1_Mus1 LINE L1 -133 6434 6153 7 1286 474 157 8 73 chr12 91933393 91933517 -29324013 + L1Md_F3 LINE L1 6469 6584 0 7 1286 734 187 0 6 chr12 91933763 91933919 -29323611 + CT-rich Low_complexity Low_complexity 1 155 0 7 1286 678 130 17 0 chr12 91934173 91934288 -29323242 + BC1_Mm scRNA scRNA 2 118 -34 7 1286 1231 339 73 59 chr12 91934843 91935745 -29321785 - Lx8 LINE L1 -299 7174 6260 7 1286 230 250 33 16 chr12 91936202 91936263 -29321267 - RMER15 LTR ERVL -92 483 422 7 1286 200 132 26 0 chr12 91936985 91937023 -29320507 + (ATG)n Simple_repeat Simple_repeat 2 40 0 7 1286 548 95 12 0 chr12 91937159 91937243 -29320287 + (GA)n Simple_repeat Simple_repeat 2 86 0 7 1286 895 253 45 104 chr12 91938246 91938618 -29318912 + MER33 DNA MER1_type 1 316 -8 7 1286 208 385 11 0 chr12 91938759 91938850 -29318680 + L2c LINE L2 3057 3148 -239 7 1286 241 152 207 37 chr12 91939189 91939271 -29318259 - Lx8 LINE L1 -5 7468 7373 7 1286 207 0 0 0 chr12 91940448 91940471 -29317059 + (TA)n Simple_repeat Simple_repeat 1 23 0 7 1286 1101 259 76 26 chr12 91940585 91941084 -29316446 + L1MA5 LINE L1 4192 4715 -1428 7 1286 373 312 10 0 chr12 91941133 91941229 -29316301 + B3A SINE B2 4 100 -98 7 1286 322 314 60 93 chr12 91941228 91941340 -29316190 + B3 SINE B2 66 166 -50 7 1286 921 128 0 0 chr12 91941340 91941488 -29316042 + (TAGA)n Simple_repeat Simple_repeat 1 148 0 7 1286 322 314 60 93 chr12 91941488 91941526 -29316004 + B3 SINE B2 167 211 -5 7 1286 22 35 0 0 chr12 91941634 91941663 -29315867 + AT_rich Low_complexity Low_complexity 1 29 0 7 1286 387 0 0 0 chr12 91941666 91941709 -29315821 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1286 453 36 0 0 chr12 91941709 91941763 -29315767 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 1286 766 248 83 42 chr12 91941763 91942042 -29315488 + MTD LTR MaLR 92 417 -2 7 1286 595 289 75 58 chr12 91942072 91942575 -29314955 + L1MA5 LINE L1 5728 6239 -61 7 1286 327 253 34 22 chr12 91942646 91942735 -29314795 + BC1_Mm scRNA scRNA 3 92 -60 7 1286 306 0 0 0 chr12 91943278 91943312 -29314218 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1286 879 287 74 4 chr12 91943558 91943789 -29313741 - Lx8 LINE L1 -164 7309 7063 7 1286 5066 62 0 32 chr12 91944729 91945407 -29312123 + L1_Mus2 LINE L1 5911 6566 0 7 1286 1347 63 10 5 chr12 91945841 91946033 -29311497 + L1_Mus3 LINE L1 6440 6632 -6 7 1286 243 299 30 40 chr12 91946928 91947029 -29310501 + L2 LINE L2 2799 2898 -521 7 1286 30 69 0 0 chr12 91947117 91947175 -29310355 + AT_rich Low_complexity Low_complexity 1 58 0 7 1286 306 0 0 0 chr12 91948163 91948197 -29309333 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1286 309 346 80 14 chr12 91949789 91949927 -29307603 - MIRm SINE MIR -125 151 5 7 1286 310 305 56 121 chr12 91950411 91950642 -29306888 + Charlie8 DNA MER1_type 12 227 -2201 7 1286 1043 81 0 26 chr12 91951684 91951836 -29305694 - B1_Mus1 SINE Alu 0 148 1 7 1286 215 229 21 0 chr12 91951985 91952033 -29305497 + ID4_ SINE ID 35 83 0 7 1286 4997 188 40 9 chr12 91952212 91953183 -29304347 + Lx5 LINE L1 6046 7046 -4 7 1286 787 106 0 22 chr12 91953185 91953320 -29304210 + (GGA)n Simple_repeat Simple_repeat 2 133 0 7 1286 23 54 0 0 chr12 91953919 91953956 -29303574 + AT_rich Low_complexity Low_complexity 1 37 0 7 1286 405 0 0 0 chr12 91954470 91954515 -29303015 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1286 302 356 33 52 chr12 91954528 91954741 -29302789 + L1M5 LINE L1 4550 4758 -1388 7 1286 281 250 17 0 chr12 91954844 91954904 -29302626 - MLT1K LTR MaLR -136 459 399 7 1286 261 123 15 30 chr12 91955072 91955139 -29302391 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 1286 518 191 8 0 chr12 91955384 91955515 -29302015 + CT-rich Low_complexity Low_complexity 1 132 0 7 1286 483 240 121 24 chr12 91955516 91955640 -29301890 - B1_Mur1 SINE Alu -7 142 7 7 1286 225 303 101 38 chr12 91955652 91955731 -29301799 + MLT1J LTR MaLR 45 128 -384 7 1286 521 300 63 14 chr12 91955749 91955891 -29301639 + ORR1E LTR MaLR 1 149 -210 7 1286 665 150 152 26 chr12 91955892 91956043 -29301487 - B2_Mm2 SINE B2 -21 174 5 7 1286 702 277 29 87 chr12 91956036 91956277 -29301253 + ORR1E LTR MaLR 128 354 -5 7 1286 653 313 39 15 chr12 91958380 91958584 -29298946 - B4A SINE B4 -2 290 82 7 1286 607 302 15 5 chr12 91958719 91958925 -29298605 - Lx9 LINE L1 -171 7473 7266 7 1286 402 225 0 0 chr12 91958950 91959021 -29298509 - B4A SINE B4 -221 71 1 7 1286 510 96 0 0 chr12 91959142 91959215 -29298315 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 7 1286 513 242 11 125 chr12 91959243 91959427 -29298103 - RSINE1 SINE B4 0 165 3 7 1286 1502 281 56 49 chr12 91960118 91960478 -29297052 + L1MCa LINE L1 29 401 -6107 7 1286 579 29 0 0 chr12 91960478 91960547 -29296983 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1286 1502 281 56 49 chr12 91960547 91960911 -29296619 + L1MCa LINE L1 402 783 -5725 7 1286 363 78 0 0 chr12 91960911 91960962 -29296568 + (TAG)n Simple_repeat Simple_repeat 2 52 0 7 1286 1502 281 56 49 chr12 91960962 91961054 -29296476 + L1MCa LINE L1 784 851 -5657 7 1286 875 220 32 105 chr12 91961027 91961438 -29296092 + L1MCa LINE L1 1382 1762 -4746 7 1286 666 55 0 0 chr12 91961714 91961805 -29295725 + (TG)n Simple_repeat Simple_repeat 2 92 0 7 1286 265 325 137 51 chr12 91961805 91961980 -29295550 + B3A SINE B2 9 198 0 7 1286 26 0 0 0 chr12 91962065 91962091 -29295439 + AT_rich Low_complexity Low_complexity 1 26 0 7 1286 21 57 0 0 chr12 91962216 91962251 -29295279 + AT_rich Low_complexity Low_complexity 1 35 0 7 1286 236 222 0 0 chr12 91968439 91968484 -29289046 + A-rich Low_complexity Low_complexity 1 45 0 7 1286 180 163 0 0 chr12 91968539 91968582 -29288948 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1286 207 0 0 0 chr12 91968739 91968762 -29288768 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 1286 234 116 0 0 chr12 91969038 91969081 -29288449 + (TATG)n Simple_repeat Simple_repeat 4 46 0 7 1286 647 157 28 9 chr12 91969088 91969197 -29288333 - RSINE1 SINE B4 -32 133 23 7 1286 481 124 35 0 chr12 91971622 91971735 -29285795 + (CAGA)n Simple_repeat Simple_repeat 4 120 0 7 1286 312 27 0 0 chr12 91972888 91972925 -29284605 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 7 1286 193 75 50 0 chr12 91974391 91974431 -29283099 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 7 1286 282 143 0 0 chr12 91976015 91976064 -29281466 + (CAT)n Simple_repeat Simple_repeat 1 49 0 7 1286 330 98 0 0 chr12 91977264 91977315 -29280215 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 7 1286 186 43 0 0 chr12 91978141 91978164 -29279366 + (CAA)n Simple_repeat Simple_repeat 3 25 0 7 1286 256 339 40 8 chr12 91978943 91979068 -29278462 + L2a LINE L2 3298 3426 0 7 1286 732 80 0 0 chr12 91979226 91979326 -29278204 + (TTCTC)n Simple_repeat Simple_repeat 1 100 0 7 1286 489 34 0 0 chr12 91979327 91979386 -29278144 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 7 1286 2168 54 0 0 chr12 91980137 91980413 -29277117 - L1_Mus3 LINE L1 -172 6466 6191 7 1286 898 83 14 14 chr12 91980413 91980559 -29276971 + L1_Mus3 LINE L1 6493 6638 0 7 1286 325 321 82 51 chr12 91980572 91980828 -29276702 - L1MC LINE L1 -2020 4126 3863 7 1286 504 0 0 0 chr12 91980868 91980924 -29276606 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 7 1286 557 52 0 13 chr12 91980926 91981004 -29276526 + (GGGGA)n Simple_repeat Simple_repeat 3 79 0 7 1286 1190 103 16 42 chr12 91981723 91981916 -29275614 + B2_Mm2 SINE B2 2 189 -6 7 1286 1590 236 45 34 chr12 91982523 91982901 -29274629 - MTD LTR MaLR -17 402 21 7 1286 489 17 0 0 chr12 91982901 91982959 -29274571 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1286 849 231 117 22 chr12 91982964 91983194 -29274336 + B4 SINE B4 19 270 -22 7 1286 550 303 33 17 chr12 91983300 91983481 -29274049 - LFSINE_Vert SINE SINE -216 243 60 7 1286 958 139 28 1 chr12 91984827 91984992 -29272538 + Lx5 LINE L1 6362 6541 -459 7 1286 638 194 90 0 chr12 91985618 91985752 -29271778 - B1_Mur2 SINE Alu -3 146 1 7 1286 4454 192 20 16 chr12 91986150 91987014 -29270516 + Lx5 LINE L1 6175 7041 -9 7 1286 22 35 0 0 chr12 91987283 91987312 -29270218 + AT_rich Low_complexity Low_complexity 1 29 0 7 1286 408 40 0 0 chr12 91987578 91987628 -29269902 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1286 513 0 0 0 chr12 91988361 91988418 -29269112 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1286 292 304 82 63 chr12 91989359 91989517 -29268013 - MIRb SINE MIR -17 251 91 7 1286 307 306 8 47 chr12 91989638 91989765 -29267765 + MLT1D LTR MaLR 71 192 -313 7 1286 21 36 0 0 chr12 91989874 91989902 -29267628 + AT_rich Low_complexity Low_complexity 1 28 0 7 1286 231 294 23 34 chr12 91990158 91990246 -29267284 - MER20 DNA MER1_type -116 103 17 7 1286 222 37 0 0 chr12 91990308 91990335 -29267195 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1286 605 296 78 30 chr12 91991015 91991228 -29266302 + B4A SINE B4 3 227 -65 7 1286 1128 36 0 0 chr12 91991228 91991365 -29266165 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 7 1286 605 296 78 30 chr12 91991365 91991422 -29266108 + B4A SINE B4 228 285 -7 7 1286 550 79 11 11 chr12 91991450 91991540 -29265990 + (CA)n Simple_repeat Simple_repeat 1 90 0 7 1286 27 29 0 0 chr12 91991630 91991664 -29265866 + AT_rich Low_complexity Low_complexity 1 34 0 7 1286 320 209 0 11 chr12 91991702 91991789 -29265741 + (TA)n Simple_repeat Simple_repeat 2 87 0 7 1286 339 25 0 0 chr12 91991802 91991842 -29265688 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1286 810 289 87 24 chr12 91992374 91992789 -29264741 - Arthur1 DNA Tip100 -30 3917 3477 8 1286 250 347 195 8 chr12 91992909 91993150 -29264380 - Arthur1 DNA Tip100 -3554 393 108 8 1286 719 293 30 30 chr12 91993474 91993738 -29263792 + Lx8 LINE L1 7055 7318 -155 8 1286 3628 55 20 12 chr12 91993838 91994332 -29263198 - L1_Mus2 LINE L1 -232 6334 5837 8 1286 1446 80 55 0 chr12 91994332 91994533 -29262997 + L1_Mus2 LINE L1 6353 6564 -2 8 1286 38 0 0 0 chr12 91994630 91994668 -29262862 + AT_rich Low_complexity Low_complexity 1 38 0 8 1286 1038 235 187 9 chr12 91995109 91995425 -29262105 + MTEb LTR MaLR 8 379 0 8 1286 219 61 19 58 chr12 91995981 91996033 -29261497 + (TAAAAA)n Simple_repeat Simple_repeat 1 50 0 8 1286 10263 18 0 0 chr12 91996151 91997383 -29260147 + L1Md_T LINE L1 4355 5586 -297 8 1286 8206 45 1 0 chr12 91997384 91998377 -29259153 + L1Md_T LINE L1 5588 6581 -1 8 1286 358 302 33 66 chr12 91999206 91999447 -29258083 + L1MEg LINE L1 365 597 -5487 8 1286 369 0 0 0 chr12 91999452 91999493 -29258037 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1286 339 250 0 99 chr12 91999618 91999760 -29257770 + L1MEg LINE L1 711 838 -5246 8 1286 3738 104 19 9 chr12 92000181 92000745 -29256785 - Lx2 LINE L1 -823 6174 5605 1 1286 740 100 0 16 chr12 92000745 92000867 -29256663 + Lx2 LINE L1 6878 6997 0 2 1286 806 326 64 14 chr12 92000878 92001173 -29256357 + MER21B LTR ERV1 202 511 -352 3 1286 603 319 48 110 chr12 92001265 92001575 -29255955 + B4A SINE B4 2 292 0 4 1286 481 329 49 62 chr12 92001597 92001821 -29255709 + MER21B LTR ERV1 623 843 -20 3 1286 332 318 0 43 chr12 92002151 92002243 -29255287 - ID_B1 SINE B4 -51 173 86 5 1286 488 368 18 22 chr12 92002256 92002531 -29254999 + Lx9 LINE L1 7222 7495 -149 6 1286 486 287 260 17 chr12 92002667 92003075 -29254455 + L1M5 LINE L1 3472 3978 -2168 7 1286 1188 118 0 36 chr12 92003080 92003240 -29254290 + B2_Mm2 SINE B2 1 158 -37 8 1286 243 0 0 0 chr12 92003240 92003267 -29254263 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 1286 1188 118 0 36 chr12 92003267 92003300 -29254230 + B2_Mm2 SINE B2 159 187 -8 8 1286 261 0 0 0 chr12 92003522 92003551 -29253979 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 1 1286 27 49 0 0 chr12 92003647 92003688 -29253842 + AT_rich Low_complexity Low_complexity 1 41 0 1 1286 1281 282 99 29 chr12 92005005 92005461 -29252069 + Lx8 LINE L1 6534 7021 -452 1 1286 2022 105 3 69 chr12 92005461 92005810 -29251720 + IAPLTR1a_Mm LTR ERVK 1 326 -11 1 1286 4673 38 31 0 chr12 92005811 92006415 -29251115 + IAPEz-int LTR ERVK 1 662 -5819 1 1286 433 82 0 32 chr12 92006415 92006478 -29251052 + IAPEz-int LTR ERVK 1359 1419 -5062 1 1286 1808 119 4 4 chr12 92006467 92006729 -29250801 + IAPEz-int LTR ERVK 2236 2497 -5183 1 1286 917 81 24 0 chr12 92006726 92006849 -29250681 + IAPEz-int LTR ERVK 4785 4910 -2770 1 1286 26175 17 4 0 chr12 92006849 92009793 -29247737 + IAPEz-int LTR ERVK 3525 6481 0 1 1286 2028 102 3 69 chr12 92009793 92010142 -29247388 + IAPLTR1a_Mm LTR ERVK 1 326 -11 1 1286 1013 318 102 7 chr12 92010145 92010567 -29246963 + Lx8 LINE L1 7010 7471 -2 1 1286 354 98 0 0 chr12 92011267 92011318 -29246212 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1286 258 308 245 7 chr12 92011400 92011547 -29245983 + L3 LINE CR1 3910 4091 -398 1 1286 243 189 0 0 chr12 92011743 92011796 -29245734 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1286 681 304 88 12 chr12 92012179 92012419 -29245111 - B4A SINE B4 0 292 35 1 1287 237 324 56 61 chr12 92012615 92012812 -29244718 - L1M5 LINE L1 -632 5608 5413 1 1287 432 0 0 0 chr12 92013203 92013251 -29244279 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2 1287 525 298 60 0 chr12 92013258 92013409 -29244121 - RSINE1 SINE B4 -4 161 2 2 1287 483 48 0 0 chr12 92013529 92013591 -29243939 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1287 431 318 56 43 chr12 92014031 92014051 -29243479 + ID_B1 SINE B4 60 222 -2 2 1287 440 256 85 28 chr12 92014051 92014192 -29243338 + B1F SINE Alu 1 149 0 2 1287 662 325 168 16 chr12 92014561 92014773 -29242757 - L1M5 LINE L1 -2062 4084 3857 1 1287 222 128 0 0 chr12 92014773 92014812 -29242718 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1287 662 303 185 34 chr12 92014812 92015853 -29241677 - L1M5 LINE L1 -2290 3856 2601 1 1287 195 314 65 56 chr12 92018351 92018488 -29239042 + L2b LINE L2 3021 3153 -234 2 1287 203 337 80 23 chr12 92018816 92018904 -29238626 - L2b LINE L2 -7 3368 3276 2 1287 384 312 48 0 chr12 92018919 92019044 -29238486 + RSINE1 SINE B4 26 156 -9 2 1287 552 30 0 0 chr12 92019054 92019120 -29238410 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1287 1090 52 0 29 chr12 92019146 92019285 -29238245 + B1_Mm SINE Alu 4 138 -9 3 1287 243 0 0 0 chr12 92019285 92019312 -29238218 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1287 244 293 0 0 chr12 92019864 92019922 -29237608 - L2b LINE L2 -750 2669 2612 2 1287 184 216 243 0 chr12 92020275 92020349 -29237181 + MIRb SINE MIR 60 151 -117 3 1287 473 0 18 0 chr12 92021440 92021497 -29236033 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 3 1287 2749 164 29 27 chr12 92021891 92022461 -29235069 - L1_Mur3 LINE L1 -618 5546 4935 3 1287 7281 231 74 47 chr12 92022463 92024533 -29232997 + Lx7 LINE L1 5450 7578 -118 3 1287 279 0 0 0 chr12 92024533 92024564 -29232966 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1287 396 0 0 0 chr12 92024564 92024607 -29232923 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1287 7281 237 79 32 chr12 92024607 92024716 -29232814 + Lx7 LINE L1 7579 7695 -1 3 1287 23 0 0 0 chr12 92024716 92024739 -29232791 + AT_rich Low_complexity Low_complexity 1 23 0 3 1287 203 183 49 16 chr12 92026027 92026088 -29231442 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 3 1287 194 288 172 81 chr12 92026344 92026468 -29231062 - L2 LINE L2 -842 2577 2427 4 1287 1299 56 56 6 chr12 92026468 92026647 -29230883 + B2_Mm2 SINE B2 2 189 -6 4 1287 194 288 172 81 chr12 92026647 92026696 -29230834 - L2 LINE L2 -993 2426 2388 4 1287 518 224 132 15 chr12 92026736 92026940 -29230590 + Lx9 LINE L1 7417 7644 0 4 1287 297 343 66 38 chr12 92027607 92027774 -29229756 - L2b LINE L2 0 3426 3238 4 1287 3950 104 30 38 chr12 92028162 92028801 -29228729 + Lx LINE L1 6016 6649 -5 4 1287 283 275 8 24 chr12 92028866 92028989 -29228541 + L1MC5 LINE L1 7466 7586 -375 4 1287 180 0 0 0 chr12 92029493 92029513 -29228017 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 4 1287 314 356 144 7 chr12 92029805 92030011 -29227519 + MIR SINE MIR 10 238 -24 4 1287 433 0 35 0 chr12 92030082 92030139 -29227391 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1287 333 0 0 0 chr12 92030149 92030186 -29227344 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1287 260 231 138 0 chr12 92030190 92030271 -29227259 + PB1D7 SINE Alu 14 101 -16 5 1287 903 121 131 18 chr12 92030338 92030506 -29227024 + B2_Mm2 SINE B2 1 187 -8 5 1287 27 0 0 0 chr12 92031070 92031097 -29226433 + AT_rich Low_complexity Low_complexity 1 27 0 5 1287 255 61 0 0 chr12 92032418 92032451 -29225079 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 5 1287 559 368 77 42 chr12 92034189 92034646 -29222884 + MLT1L LTR MaLR 137 609 -1 5 1287 500 226 16 80 chr12 92034747 92034872 -29222658 + MTD LTR MaLR 43 159 -260 5 1287 618 247 7 58 chr12 92034898 92035053 -29222477 + B1_Mur1 SINE Alu 2 148 -1 5 1287 886 59 46 55 chr12 92035080 92035317 -29222213 + GA-rich Low_complexity Low_complexity 1 234 0 5 1287 1169 40 11 33 chr12 92035317 92035499 -29222031 + (GGAAA)n Simple_repeat Simple_repeat 2 179 0 5 1287 405 284 168 10 chr12 92035502 92035617 -29221913 + MTD LTR MaLR 191 344 -75 5 1287 243 0 0 0 chr12 92035617 92035644 -29221886 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1287 405 279 169 6 chr12 92035644 92035712 -29221818 + MTD LTR MaLR 345 416 -3 5 1287 195 178 0 43 chr12 92037376 92037423 -29220107 + L3 LINE CR1 2350 2394 -2095 6 1287 679 269 207 27 chr12 92037585 92037914 -29219616 - MLT2B4 LTR ERVL -166 390 3 6 1287 1104 82 7 0 chr12 92037935 92038082 -29219448 + B1_Mus1 SINE Alu 1 148 0 6 1287 949 232 62 34 chr12 92038108 92038305 -29219225 + Lx7 LINE L1 7165 7356 -340 6 1287 360 0 0 0 chr12 92038305 92038345 -29219185 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 6 1287 949 259 90 72 chr12 92038345 92038638 -29218892 + Lx7 LINE L1 7254 7525 -171 6 1287 413 301 99 9 chr12 92038736 92038924 -29218606 - MIRb SINE MIR -3 205 2 6 1287 2399 82 9 0 chr12 92039726 92040057 -29217473 - Lx3_Mus LINE L1 -8 7001 6668 6 1287 772 104 17 0 chr12 92040061 92040176 -29217354 + 5S rRNA rRNA 4 120 -1 6 1287 601 311 35 22 chr12 92040943 92041170 -29216360 - Lx8 LINE L1 -336 7137 6908 6 1287 222 128 0 0 chr12 92041354 92041393 -29216137 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1287 569 62 12 0 chr12 92041396 92041476 -29216054 - B1_Mus2 SINE Alu 0 147 67 7 1287 4041 67 11 1 chr12 92042222 92042854 -29214676 - L1_Mus2 LINE L1 -479 6087 5452 7 1287 1109 92 0 6 chr12 92042854 92043029 -29214501 - L1Md_F2 LINE L1 -1 6581 6408 7 1287 4041 98 19 5 chr12 92043029 92043172 -29214358 - L1_Mus2 LINE L1 -432 5451 5302 7 1287 3268 83 24 53 chr12 92043172 92043666 -29213864 + L1_Mus2 LINE L1 6080 6559 -7 7 1287 606 337 62 52 chr12 92043761 92044421 -29213109 + L1ME3A LINE L1 5463 6129 -44 7 1287 488 316 30 54 chr12 92044467 92044765 -29212765 - B4A SINE B4 0 292 2 7 1287 279 0 0 0 chr12 92044846 92044877 -29212653 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1287 1124 292 87 106 chr12 92044879 92045304 -29212226 - L1MC1 LINE L1 -110 6223 5804 7 1287 649 262 0 68 chr12 92045304 92045480 -29212050 - RSINE1 SINE B4 0 165 2 7 1287 1124 272 71 77 chr12 92045480 92046087 -29211443 - L1MC1 LINE L1 -530 5803 5208 7 1287 297 265 31 0 chr12 92046185 92046283 -29211247 - L1MB3 LINE L1 -23 6160 6060 7 1287 758 290 78 8 chr12 92047109 92047366 -29210164 + B4A SINE B4 2 276 -16 8 1287 180 0 0 0 chr12 92047396 92047416 -29210114 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1287 336 48 0 0 chr12 92047429 92047471 -29210059 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 1287 458 295 0 8 chr12 92047764 92047881 -29209649 + PB1D7 SINE Alu 1 112 -8 8 1287 854 276 62 19 chr12 92048180 92048505 -29209025 - L1MB7 LINE L1 -9 6175 5837 8 1287 743 275 13 8 chr12 92048530 92048741 -29208789 - B3A SINE B2 0 216 6 8 1287 993 300 59 39 chr12 92048762 92049946 -29207584 - L1MB7 LINE L1 -375 5809 4614 8 1287 280 297 50 14 chr12 92050239 92050379 -29207151 + ORSL-2a DNA Tip100 86 230 -112 8 1287 243 219 94 0 chr12 92051812 92051876 -29205654 - MLT1A1 LTR MaLR -338 70 1 8 1287 423 337 76 67 chr12 92052138 92052494 -29205036 - ORR1E LTR MaLR 0 359 1 8 1287 281 312 0 0 chr12 92053193 92053270 -29204260 - ID4 SINE ID -5 78 2 8 1287 1203 210 160 7 chr12 92054021 92054309 -29203221 + RMER1B Other Other 45 376 -690 9 1287 1329 94 0 3 chr12 92054312 92054602 -29202928 + (TCC)n Simple_repeat Simple_repeat 1 288 0 9 1287 1050 254 168 7 chr12 92054602 92054966 -29202564 + RMER1A Other Other 81 455 -575 9 1287 7332 44 1 2 chr12 92054970 92055862 -29201668 + L1_Mus1 LINE L1 5677 6567 0 9 1287 2360 212 49 70 chr12 92055966 92055981 -29201549 + RMER1B Other Other 462 476 -590 9 1287 2003 141 10 0 chr12 92055981 92056287 -29201243 - RLTR27 LTR ERVK 0 309 1 9 1287 2360 212 49 70 chr12 92056287 92056885 -29200645 + RMER1B Other Other 477 1062 -4 9 1287 411 309 81 87 chr12 92057220 92057369 -29200161 - B3A SINE B2 -4 194 47 9 1287 354 45 0 0 chr12 92057384 92057428 -29200102 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 1287 313 357 35 7 chr12 92057436 92057577 -29199953 - MIRb SINE MIR -60 208 64 9 1287 278 340 29 10 chr12 92057743 92057847 -29199683 + ID_B1 SINE B4 81 186 -38 9 1287 217 75 50 0 chr12 92058929 92058969 -29198561 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1287 749 271 113 23 chr12 92058999 92059256 -29198274 - B4A SINE B4 -8 284 5 1 1287 1260 213 21 7 chr12 92060172 92060451 -29197079 - Lx7 LINE L1 -940 6756 6474 1 1287 316 140 0 17 chr12 92060453 92060511 -29197019 - Lx7 LINE L1 -1440 6256 6200 1 1287 389 152 0 0 chr12 92060510 92060576 -29196954 + Lx7 LINE L1 6745 6810 -886 1 1287 776 256 101 14 chr12 92060576 92060906 -29196624 - MTD LTR MaLR -20 380 19 1 1287 2778 90 5 8 chr12 92060990 92061380 -29196150 + MTB LTR MaLR 1 389 -11 1 1287 511 239 212 86 chr12 92061381 92061499 -29196031 - MTC-int LTR MaLR -70 1188 1019 1 1287 243 0 0 0 chr12 92061499 92061526 -29196004 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1287 511 239 212 86 chr12 92061526 92061709 -29195821 - MTC-int LTR MaLR -240 1018 850 1 1287 4731 164 39 43 chr12 92061909 92062815 -29194715 + RMER19B LTR ERVK 1 902 0 1 1287 1501 139 24 8 chr12 92062995 92063241 -29194289 - MTC LTR MaLR 0 421 172 1 1287 1797 218 9 84 chr12 92063245 92063791 -29193739 - MERVL-int LTR ERVL -4980 505 1 1 1287 3212 152 17 67 chr12 92063791 92064423 -29193107 - MT2B LTR ERVL 0 601 1 1 1287 742 142 0 8 chr12 92064423 92064544 -29192986 - MTC LTR MaLR -287 120 1 1 1287 965 278 57 102 chr12 92064860 92065329 -29192201 - MTE-int LTR MaLR -739 1224 744 1 1287 342 0 0 0 chr12 92065333 92065371 -29192159 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1287 238 246 35 0 chr12 92065388 92065445 -29192085 - MTE-int LTR MaLR -1461 119 61 1 1287 21 0 0 0 chr12 92066488 92066509 -29191021 + AT_rich Low_complexity Low_complexity 1 21 0 1 1287 2336 136 24 3 chr12 92066690 92067073 -29190457 + ORR1B1 LTR MaLR 2 392 -2 1 1287 5883 83 19 15 chr12 92067289 92068133 -29189397 - Lx3_Mus LINE L1 0 7009 6163 1 1287 279 325 31 39 chr12 92068281 92068409 -29189121 - ID4 SINE ID -24 128 2 1 1287 331 336 9 17 chr12 92068414 92068529 -29189001 - PB1D10 SINE Alu -3 114 1 1 1287 21 36 0 0 chr12 92068570 92068598 -29188932 + AT_rich Low_complexity Low_complexity 1 28 0 1 1287 200 143 0 28 chr12 92069024 92069046 -29188484 + polypurine Low_complexity Low_complexity 3 24 0 1 1287 1101 106 0 16 chr12 92069046 92069229 -29188301 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1287 200 143 0 28 chr12 92069229 92069242 -29188288 + polypurine Low_complexity Low_complexity 25 37 0 1 1287 180 330 73 21 chr12 92069403 92069499 -29188031 - MER5A DNA MER1_type -85 104 4 1 1287 1117 95 0 0 chr12 92070298 92070445 -29187085 + B1_Mus1 SINE Alu 2 148 0 1 1287 232 315 129 11 chr12 92071012 92071105 -29186425 - RMER15 LTR ERVL -68 507 404 1 1287 189 211 25 123 chr12 92071760 92071841 -29185689 + L3 LINE CR1 3889 3961 -528 1 1287 252 83 0 0 chr12 92072380 92072416 -29185114 - ORR1D2 LTR MaLR 0 370 335 1 1287 2174 239 57 8 chr12 92072409 92072915 -29184615 - ORR1D2-int LTR MaLR -173 1197 667 1 1287 450 0 0 0 chr12 92072960 92073010 -29184520 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1287 2192 47 0 7 chr12 92073010 92073277 -29184253 - L1Md_F3 LINE L1 -21 6563 6297 1 1287 243 0 0 0 chr12 92073278 92073305 -29184225 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1287 26 0 0 0 chr12 92073321 92073347 -29184183 + AT_rich Low_complexity Low_complexity 1 26 0 1 1287 36264 30 0 0 chr12 92073348 92079863 -29177667 - L1Md_T LINE L1 0 6585 1 1 1287 1398 278 77 114 chr12 92079872 92080572 -29176958 - ORR1D2-int LTR MaLR -725 645 3 1 1287 1412 227 66 14 chr12 92080574 92080922 -29176608 - ORR1D2 LTR MaLR -4 366 1 1 1287 201 74 0 0 chr12 92081572 92081599 -29175931 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1287 294 29 0 0 chr12 92083022 92083057 -29174473 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1287 441 0 0 0 chr12 92083057 92083105 -29174425 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1287 3564 46 0 0 chr12 92083877 92084312 -29173218 - L1Md_F2 LINE L1 -12 6570 6136 1 1287 234 184 0 0 chr12 92084491 92084540 -29172990 + A-rich Low_complexity Low_complexity 1 49 0 1 1287 3268 77 36 24 chr12 92084972 92085440 -29172090 - L1Md_F2 LINE L1 0 6582 6109 1 1287 21 0 0 0 chr12 92085444 92085465 -29172065 + AT_rich Low_complexity Low_complexity 1 21 0 1 1287 4085 180 88 41 chr12 92085471 92086332 -29171198 + RMER19B LTR ERVK 1 902 0 1 1287 512 223 32 40 chr12 92086619 92086745 -29170785 - Lx9 LINE L1 -457 7187 7063 1 1287 1943 284 46 31 chr12 92086754 92087882 -29169648 - L1M4c LINE L1 -2486 3893 2749 1 1287 393 75 0 0 chr12 92087987 92088040 -29169490 + (CTAGGG)n Simple_repeat Simple_repeat 1 53 0 1 1287 340 306 88 69 chr12 92088649 92088998 -29168532 - L1M4c LINE L1 -4598 1880 1391 1 1287 2423 141 77 26 chr12 92089444 92089896 -29167634 + Lx2 LINE L1 6523 6997 0 1 1287 7793 127 27 19 chr12 92089948 92092172 -29165358 - Lx LINE L1 -2 6652 4417 1 1287 3679 127 7 2 chr12 92092167 92092781 -29164749 + Lx LINE L1 3808 4424 -1459 1 1287 324 0 0 0 chr12 92093432 92093468 -29164062 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1287 204 67 0 0 chr12 92094276 92094306 -29163224 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1287 464 338 47 0 chr12 92095099 92095247 -29162283 + RSINE1 SINE B4 1 155 -10 1 1287 395 87 14 0 chr12 92095347 92095416 -29162114 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1287 1275 107 53 0 chr12 92097022 92097228 -29160302 + L1Md_F2 LINE L1 6365 6581 -1 1 1287 234 0 0 0 chr12 92097244 92097270 -29160260 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1287 693 331 35 16 chr12 92097270 92097525 -29160005 + B4A SINE B4 33 292 0 1 1287 669 56 0 0 chr12 92097529 92097619 -29159911 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1287 324 0 0 0 chr12 92097619 92097654 -29159876 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1287 2334 64 19 16 chr12 92098008 92098324 -29159206 - L1Md_F2 LINE L1 -1 6581 6265 1 1287 221 286 56 93 chr12 92098630 92098792 -29158738 + MIRm SINE MIR 9 164 -112 1 1287 6872 93 10 8 chr12 92101576 92102578 -29154952 - Lx LINE L1 0 6654 5651 1 1287 1279 130 14 0 chr12 92102578 92102786 -29154744 + Lx LINE L1 5404 5614 -269 1 1287 441 0 0 0 chr12 92102846 92102895 -29154635 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1287 1053 84 0 0 chr12 92102895 92103048 -29154482 + (TG)n Simple_repeat Simple_repeat 1 154 0 1 1287 478 328 142 22 chr12 92103048 92103450 -29154080 + MLT1D LTR MaLR 58 505 0 1 1287 301 321 44 18 chr12 92103867 92103981 -29153549 - L2b LINE L2 0 3375 3259 1 1287 2263 182 47 17 chr12 92104100 92104509 -29153021 + MTC LTR MaLR 1 421 0 1 1287 228 358 12 24 chr12 92104531 92104614 -29152916 + MLT1A1 LTR MaLR 1 82 -283 1 1287 280 274 62 69 chr12 92104846 92104991 -29152539 + MLT1A1 LTR MaLR 248 391 -17 1 1287 252 403 6 38 chr12 92105129 92105289 -29152241 - MER5A DNA MER1_type -5 184 30 1 1287 408 300 0 0 chr12 92105443 92105533 -29151997 + ID_B1 SINE B4 126 215 -9 1 1287 276 170 0 0 chr12 92105544 92105597 -29151933 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1287 26 50 0 0 chr12 92105598 92105638 -29151892 + AT_rich Low_complexity Low_complexity 1 40 0 1 1287 348 342 114 31 chr12 92105833 92106452 -29151078 - L1M5 LINE L1 -1724 4422 3749 1 1287 231 114 0 0 chr12 92107451 92107486 -29150044 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1287 201 156 67 0 chr12 92107659 92107704 -29149826 + (CAAAG)n Simple_repeat Simple_repeat 2 49 0 1 1287 182 219 0 47 chr12 92107712 92107755 -29149775 - MIR3 SINE MIR -158 50 10 1 1287 712 329 35 21 chr12 92107929 92108212 -29149318 + B4 SINE B4 2 288 -4 1 1287 278 307 0 29 chr12 92108274 92108378 -29149152 + GA-rich Low_complexity Low_complexity 2 102 0 1 1287 396 338 87 39 chr12 92108451 92108808 -29148722 + L1MD LINE L1 2439 2812 -3334 1 1287 233 191 16 0 chr12 92108835 92108853 -29148677 + (TAGA)n Simple_repeat Simple_repeat 2 20 0 1 1287 425 18 0 34 chr12 92108853 92108912 -29148618 + (CATA)n Simple_repeat Simple_repeat 3 59 0 1 1287 233 191 16 0 chr12 92108912 92108956 -29148574 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 1 1287 483 120 27 18 chr12 92108972 92109042 -29148488 + polypurine Low_complexity Low_complexity 5 74 0 1 1287 957 145 0 0 chr12 92109042 92109221 -29148309 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 1287 483 120 27 18 chr12 92109221 92109260 -29148270 + polypurine Low_complexity Low_complexity 75 114 0 1 1287 1116 84 0 0 chr12 92109263 92109442 -29148088 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 1287 225 0 0 0 chr12 92109442 92109467 -29148063 + (CAA)n Simple_repeat Simple_repeat 1 25 0 1 1287 669 168 0 0 chr12 92109467 92109646 -29147884 + GA-rich Low_complexity Low_complexity 2 180 0 1 1287 786 140 0 0 chr12 92109650 92109829 -29147701 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 1287 435 160 9 28 chr12 92109834 92109943 -29147587 + Lx9 LINE L1 7532 7638 -6 1 1287 1271 24 6 46 chr12 92110183 92110357 -29147173 - L1_Mus1 LINE L1 0 6567 6401 1 1287 351 97 37 37 chr12 92110662 92110769 -29146761 + T-rich Low_complexity Low_complexity 2 108 0 1 1287 1109 89 7 0 chr12 92110792 92110938 -29146592 - B1_Mm SINE Alu 0 147 1 1 1287 354 250 126 19 chr12 92110957 92111116 -29146414 + L2a LINE L2 3005 3180 -246 1 1287 311 211 11 0 chr12 92111174 92111264 -29146266 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1 1287 628 285 10 51 chr12 92111367 92111484 -29146046 + MLT2D LTR ERVL 9 121 -293 1 1287 621 72 0 0 chr12 92111484 92111567 -29145963 + (TATG)n Simple_repeat Simple_repeat 2 84 0 1 1287 628 285 10 51 chr12 92111567 92111645 -29145885 + MLT2D LTR ERVL 122 196 -218 1 1287 2152 140 10 59 chr12 92112378 92112766 -29144764 + ORR1C1 LTR MaLR 1 369 -9 1 1287 180 111 0 0 chr12 92113535 92113562 -29143968 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 1 1287 212 229 53 0 chr12 92115511 92115568 -29141962 - MIR SINE MIR -92 170 119 1 1287 800 187 0 12 chr12 92117366 92117539 -29139991 + GA-rich Low_complexity Low_complexity 2 172 0 1 1287 830 146 0 13 chr12 92117629 92117782 -29139748 + GA-rich Low_complexity Low_complexity 2 152 0 1 1287 231 322 0 0 chr12 92118233 92118292 -29139238 + MLT1A LTR MaLR 1 59 -315 1 1287 3931 152 6 3 chr12 92118328 92118995 -29138535 - Lx LINE L1 -39 6615 5947 1 1287 24 0 0 0 chr12 92118995 92119019 -29138511 + AT_rich Low_complexity Low_complexity 1 24 0 1 1287 2408 233 86 24 chr12 92119019 92119766 -29137764 - Lx7 LINE L1 -28 7668 6876 2 1287 4306 198 16 45 chr12 92119764 92120696 -29136834 - Lx7 LINE L1 -499 7197 6293 2 1287 226 433 24 0 chr12 92120849 92120976 -29136554 + L2b LINE L2 3244 3373 -2 2 1287 1063 312 40 11 chr12 92121456 92121809 -29135721 - MLT1C LTR MaLR -15 452 90 2 1287 1483 205 90 97 chr12 92121811 92121845 -29135685 - MTD LTR MaLR 0 419 387 2 1287 1220 33 0 25 chr12 92121845 92122002 -29135528 + L1Md_F3 LINE L1 6418 6570 -14 2 1287 1483 205 90 97 chr12 92122002 92122389 -29135141 - MTD LTR MaLR -33 386 1 2 1287 261 306 45 45 chr12 92122389 92122478 -29135052 - MLT1C LTR MaLR -375 92 4 2 1287 302 270 14 0 chr12 92122827 92122900 -29134630 + ID4 SINE ID 14 90 -62 2 1287 393 22 0 0 chr12 92122902 92122948 -29134582 + (CACG)n Simple_repeat Simple_repeat 2 47 0 2 1287 303 245 150 99 chr12 92123182 92123395 -29134135 + MLT1E1 LTR MaLR 430 653 -1 2 1287 219 256 34 34 chr12 92123675 92123764 -29133766 + A-rich Low_complexity Low_complexity 3 91 0 2 1287 838 252 112 31 chr12 92124977 92125264 -29132266 - MER58B DNA MER1_type 0 341 32 2 1287 358 133 0 39 chr12 92126366 92126444 -29131086 + CT-rich Low_complexity Low_complexity 4 78 0 2 1287 717 165 23 16 chr12 92126478 92126743 -29130787 + CT-rich Low_complexity Low_complexity 1 267 0 2 1287 21 0 0 0 chr12 92127374 92127395 -29130135 + AT_rich Low_complexity Low_complexity 1 21 0 2 1287 28 29 0 0 chr12 92127437 92127472 -29130058 + AT_rich Low_complexity Low_complexity 1 35 0 2 1287 2169 181 24 7 chr12 92127942 92128354 -29129176 + MTC LTR MaLR 3 421 0 2 1287 187 350 48 41 chr12 92128794 92128940 -29128590 + L2 LINE L2 1948 2094 -1325 2 1287 614 276 43 52 chr12 92129530 92129763 -29127767 + Lx8 LINE L1 7093 7323 -150 2 1287 25 51 0 0 chr12 92130250 92130289 -29127241 + AT_rich Low_complexity Low_complexity 1 39 0 2 1287 828 252 84 63 chr12 92130807 92131091 -29126439 - B4 SINE B4 0 292 3 2 1287 412 297 133 21 chr12 92134441 92134925 -29122605 - L1ME1 LINE L1 0 6178 5662 2 1287 722 293 95 67 chr12 92135481 92135839 -29121691 + MLT1A LTR MaLR 2 369 -5 2 1287 496 244 155 16 chr12 92136118 92136305 -29121225 - B3 SINE B2 -2 214 2 2 1287 371 325 48 0 chr12 92137630 92137796 -29119734 - MER53 DNA hAT -3 190 17 2 1287 446 0 19 0 chr12 92138157 92138211 -29119319 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1287 305 215 136 65 chr12 92138688 92138842 -29118688 + MER121 Unknown Unknown 94 258 -154 2 1287 21 0 0 0 chr12 92139557 92139578 -29117952 + AT_rich Low_complexity Low_complexity 1 21 0 2 1287 439 347 26 51 chr12 92139750 92139984 -29117546 + MIRb SINE MIR 29 256 -12 2 1287 405 0 0 0 chr12 92140226 92140271 -29117259 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1287 414 0 0 0 chr12 92140271 92140316 -29117214 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1287 374 305 45 8 chr12 92140669 92140794 -29116736 + MER58A DNA MER1_type 30 159 -65 2 1287 1473 265 35 14 chr12 92140794 92141165 -29116365 + MTE2b LTR MaLR 1 379 0 2 1287 530 326 92 67 chr12 92141255 92141613 -29115917 - MLT1A LTR MaLR -5 369 3 2 1287 206 347 124 12 chr12 92142788 92142957 -29114573 + MIRb SINE MIR 14 201 -67 2 1287 391 294 76 32 chr12 92142970 92143128 -29114402 + B4 SINE B4 1 165 -127 2 1287 188 135 27 0 chr12 92143192 92143229 -29114301 + (CATA)n Simple_repeat Simple_repeat 1 38 0 2 160 518 323 52 98 chr12 92143365 92143712 -29113818 - MLT1B LTR MaLR 0 390 60 2 1288 614 361 28 45 chr12 92143722 92144009 -29113521 + MTE2b LTR MaLR 3 284 -95 2 1288 328 194 0 0 chr12 92144010 92144072 -29113458 + Lx4A LINE L1 6501 6562 -496 2 1288 508 263 53 14 chr12 92144079 92144240 -29113290 - MTEa LTR MaLR -14 405 236 2 1288 478 174 16 0 chr12 92144240 92144361 -29113169 - Lx2B LINE L1 -857 6143 6021 2 1288 294 250 103 35 chr12 92144357 92144473 -29113057 + Lx3B LINE L1 6751 6874 -99 2 1288 246 62 0 0 chr12 92144482 92144514 -29113016 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1288 216 0 0 0 chr12 92145252 92145276 -29112254 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1288 383 354 94 45 chr12 92145598 92145979 -29111551 + L1MC3 LINE L1 6992 7391 -394 2 1288 499 313 14 7 chr12 92146046 92146194 -29111336 + B3A SINE B2 34 182 -16 2 1288 239 335 67 6 chr12 92146237 92146402 -29111128 + L1MC3 LINE L1 7721 7895 -100 2 1288 283 208 12 38 chr12 92146447 92146527 -29111003 - L1MB7 LINE L1 -53 6131 6054 2 1288 194 176 0 19 chr12 92146810 92146862 -29110668 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1288 555 322 74 29 chr12 92146885 92147128 -29110402 - B4A SINE B4 -4 288 35 2 1288 228 298 114 0 chr12 92147159 92147273 -29110257 - L1MB7 LINE L1 -56 6128 6002 2 1288 495 256 74 35 chr12 92147500 92147783 -29109747 - L1M4 LINE L1 -409 5770 5477 2 1288 279 330 34 0 chr12 92147792 92147803 -29109727 - ID_B1 SINE B4 -131 93 3 2 1288 336 258 0 0 chr12 92147811 92147873 -29109657 - tRNA-Ala-GCY_ tRNA tRNA -9 66 5 2 1288 872 256 107 9 chr12 92147887 92148312 -29109218 - L1M4 LINE L1 -695 5479 5015 2 1288 636 303 102 8 chr12 92149345 92149591 -29107939 + Lx8 LINE L1 7052 7320 -153 2 1288 843 10 0 0 chr12 92149606 92149702 -29107828 + (GAGAA)n Simple_repeat Simple_repeat 4 99 0 2 1288 450 36 0 0 chr12 92150009 92150065 -29107465 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 2 1288 703 270 58 10 chr12 92150096 92150302 -29107228 + B3 SINE B2 1 216 0 2 1288 353 294 0 12 chr12 92150750 92150836 -29106694 - PB1D7 SINE Alu -1 119 35 2 1288 265 330 28 9 chr12 92151104 92151211 -29106319 - L2a LINE L2 -2 3424 3316 2 1288 250 211 103 26 chr12 92151328 92151406 -29106124 + MTEb LTR MaLR 296 379 0 2 1288 315 0 0 0 chr12 92155268 92155303 -29102227 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 2 1288 745 329 16 112 chr12 92155518 92156028 -29101502 - MT2A LTR ERVL -11 522 62 2 1288 324 345 111 25 chr12 92155827 92156062 -29101468 - MTEa LTR MaLR -101 278 24 2 1288 766 122 68 7 chr12 92156194 92156342 -29101188 + Lx2B LINE L1 6839 6995 -5 2 1288 434 327 6 19 chr12 92157034 92157046 -29100484 - RSINE1 SINE B4 -4 161 151 2 1288 423 98 0 0 chr12 92157046 92157107 -29100423 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1288 434 327 6 19 chr12 92157107 92157253 -29100277 - RSINE1 SINE B4 -15 150 5 2 1288 225 0 0 0 chr12 92158031 92158056 -29099474 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1288 700 244 7 0 chr12 92158463 92158598 -29098932 + RSINE1 SINE B4 4 139 -26 2 1288 311 0 26 0 chr12 92158601 92158640 -29098890 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1288 270 0 0 0 chr12 92159112 92159142 -29098388 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1288 267 253 53 0 chr12 92160161 92160236 -29097294 - MIRb SINE MIR -10 258 180 2 1288 548 241 103 0 chr12 92160498 92160722 -29096808 + Lx9 LINE L1 7391 7637 -7 2 1288 493 285 53 29 chr12 92160732 92160902 -29096628 - MLT1A0 LTR MaLR -75 290 117 2 1288 1083 321 86 19 chr12 92162465 92162884 -29094646 + MLT1C LTR MaLR 1 447 -20 2 1288 235 402 69 6 chr12 92163224 92163384 -29094146 - L2b LINE L2 -33 3393 3222 2 1288 700 301 92 11 chr12 92164629 92164891 -29092639 + B4A SINE B4 2 284 -8 2 1288 274 373 23 16 chr12 92165104 92165232 -29092298 + MER5A DNA MER1_type 26 154 -35 2 1288 336 48 0 0 chr12 92166260 92166302 -29091228 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1288 207 203 0 0 chr12 92166543 92166602 -29090928 + T-rich Low_complexity Low_complexity 1 59 0 2 1288 23 68 0 0 chr12 92168174 92168218 -29089312 + AT_rich Low_complexity Low_complexity 1 44 0 2 1288 438 313 48 37 chr12 92169331 92169520 -29088010 - Arthur1B DNA Tip100 -1034 191 1 2 1288 21 0 0 0 chr12 92171164 92171185 -29086345 + AT_rich Low_complexity Low_complexity 1 21 0 2 1288 556 281 71 86 chr12 92171425 92171694 -29085836 - MLT1L LTR MaLR -342 268 4 2 1288 205 333 21 132 chr12 92171920 92172110 -29085420 - L2c LINE L2 -29 3358 3190 2 1288 539 291 121 72 chr12 92172310 92172755 -29084775 + Charlie4a DNA MER1_type 1 467 -41 2 1288 668 12 12 0 chr12 92172886 92172967 -29084563 + (TC)n Simple_repeat Simple_repeat 2 83 0 2 1288 281 267 93 0 chr12 92173302 92173388 -29084142 - LTR50 LTR ERVL -1 794 701 2 1288 320 296 28 0 chr12 92173421 92173492 -29084038 + ID4_ SINE ID 9 81 -2 2 1288 240 279 81 11 chr12 92173564 92173651 -29083879 - MER58B DNA MER1_type -38 303 211 2 1288 363 308 67 30 chr12 92173714 92173780 -29083750 - LTR50 LTR ERVL -201 594 528 2 1288 1497 192 95 35 chr12 92173780 92174126 -29083404 + ORR1B2 LTR MaLR 1 367 0 2 1288 363 308 67 30 chr12 92174126 92174193 -29083337 - LTR50 LTR ERVL -268 527 456 2 1288 381 317 98 16 chr12 92174273 92174456 -29083074 - LTR50 LTR ERVL -592 203 6 2 1288 790 304 41 0 chr12 92174631 92174851 -29082679 + MER44D DNA MER2_type 2 230 -475 2 1288 542 169 101 8 chr12 92174859 92174978 -29082552 + MER44D DNA MER2_type 468 597 -108 2 1288 671 322 7 0 chr12 92175092 92175244 -29082286 + RSINE1 SINE B4 7 159 -6 2 1288 207 0 0 0 chr12 92175261 92175284 -29082246 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1288 947 155 7 0 chr12 92175293 92175441 -29082089 + B1_Mur4 SINE Alu 1 149 -1 2 1288 396 0 0 0 chr12 92175449 92175493 -29082037 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 2 1288 1263 94 0 0 chr12 92175500 92175680 -29081850 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1288 22 0 0 0 chr12 92175831 92175853 -29081677 + AT_rich Low_complexity Low_complexity 1 22 0 2 1288 216 0 0 0 chr12 92176226 92176250 -29081280 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1288 233 241 19 0 chr12 92176572 92176626 -29080904 + MER34A LTR ERV1 4 58 -513 2 1288 1096 237 114 26 chr12 92177238 92177580 -29079950 + ORR1D1 LTR MaLR 3 374 0 2 1288 313 283 135 37 chr12 92177596 92177805 -29079725 + MER34A1 LTR ERV1 376 782 -5 2 1288 423 0 0 0 chr12 92177839 92177886 -29079644 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1288 749 115 16 0 chr12 92178601 92178723 -29078807 + (TTCC)n Simple_repeat Simple_repeat 2 125 0 3 1288 1192 102 37 5 chr12 92178724 92178912 -29078618 - B2_Mm2 SINE B2 0 195 2 3 1288 442 352 88 36 chr12 92178915 92179189 -29078341 + MER74B LTR ERVL 71 358 -264 3 1288 1105 282 81 67 chr12 92179208 92179638 -29077892 + MT2A LTR ERVL 3 438 -95 3 1288 1176 240 102 11 chr12 92180471 92180745 -29076785 - MTE2b LTR MaLR -78 301 3 3 1288 417 39 0 0 chr12 92181832 92181883 -29075647 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1288 244 302 75 0 chr12 92182457 92182583 -29074947 + L1M5 LINE L1 4485 4619 -1527 3 1288 301 323 155 19 chr12 92182855 92183016 -29074514 + B3A SINE B2 1 183 -15 3 1288 1001 253 106 38 chr12 92183252 92183544 -29073986 - ORR1D2 LTR MaLR -56 314 3 3 1288 492 93 0 0 chr12 92184392 92184467 -29073063 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1288 332 332 60 140 chr12 92185814 92186263 -29071267 + L1MB8 LINE L1 4517 4929 -1217 3 1288 1768 31 0 4 chr12 92186417 92186643 -29070887 + L1Md_F2 LINE L1 5718 5942 -640 3 1288 1276 50 0 0 chr12 92186639 92186799 -29070731 + L1Md_F2 LINE L1 5427 5586 -297 3 1288 8006 49 1 5 chr12 92186799 92187787 -29069743 + L1Md_F2 LINE L1 5587 6570 -12 3 1288 4815 66 0 25 chr12 92187788 92188455 -29069075 + L1Md_F2 LINE L1 5933 6582 0 3 1288 1138 255 93 73 chr12 92188644 92189041 -29068489 - MTD LTR MaLR -12 407 3 3 1288 744 265 77 93 chr12 92189041 92189753 -29067777 + L1MB8 LINE L1 5235 5939 -239 3 1288 576 286 71 33 chr12 92189949 92190133 -29067397 + B3A SINE B2 1 191 -7 3 1288 406 321 67 74 chr12 92190151 92190434 -29067096 + B4 SINE B4 1 281 -11 3 1288 218 278 146 58 chr12 92190551 92190654 -29066876 + PB1D10 SINE Alu 2 113 -4 3 1288 192 111 0 0 chr12 92190799 92190835 -29066695 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1288 746 275 31 15 chr12 92191328 92191524 -29066006 - B3 SINE B2 -11 205 7 3 1288 22 35 0 0 chr12 92191543 92191572 -29065958 + AT_rich Low_complexity Low_complexity 1 29 0 3 1288 363 154 0 0 chr12 92192167 92192232 -29065298 + CT-rich Low_complexity Low_complexity 4 68 0 3 1288 369 245 56 19 chr12 92192253 92192361 -29065169 - PB1D10 SINE Alu -4 113 2 3 1288 839 286 58 8 chr12 92192438 92192695 -29064835 + B4A SINE B4 3 272 -20 3 1288 184 289 90 81 chr12 92192946 92193122 -29064408 + MIRb SINE MIR 3 173 -89 3 1288 486 0 0 0 chr12 92193227 92193281 -29064249 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1288 450 0 0 0 chr12 92193285 92193335 -29064195 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1288 24 32 0 0 chr12 92194974 92195005 -29062525 + AT_rich Low_complexity Low_complexity 1 31 0 3 1288 265 367 47 12 chr12 92195044 92195215 -29062315 + MIR SINE MIR 80 256 -6 3 1288 290 253 110 0 chr12 92195464 92195555 -29061975 + MLT1L LTR MaLR 143 243 -367 3 1288 824 290 35 18 chr12 92195593 92195877 -29061653 + B4A SINE B4 2 290 -2 3 1288 218 189 0 0 chr12 92195906 92195943 -29061587 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 3 1288 693 298 18 12 chr12 92196186 92196356 -29061174 + B3 SINE B2 2 172 -44 3 1288 5077 92 7 1 chr12 92196738 92197444 -29060086 - L1_Mus3 LINE L1 -3 6635 5926 3 1288 228 310 56 22 chr12 92198668 92198757 -29058773 + MIRb SINE MIR 144 235 -33 3 1288 3693 274 100 66 chr12 92199195 92200540 -29056990 + MTE-int LTR MaLR 28 1417 -163 3 1288 36303 29 0 0 chr12 92200540 92206745 -29050785 - L1Md_T LINE L1 -3 6582 281 3 1288 263 184 171 11 chr12 92206749 92206837 -29050693 + MTE-int LTR MaLR 1393 1494 -15 3 1288 260 346 28 0 chr12 92207050 92207157 -29050373 + MIRb SINE MIR 100 209 -59 3 1288 355 309 0 92 chr12 92207571 92207724 -29049806 - B2_Mm2 SINE B2 -56 139 1 3 1288 2661 263 28 98 chr12 92207934 92208899 -29048631 + RMER1C Other Other 442 1338 -4 3 1288 318 312 37 0 chr12 92209777 92209886 -29047644 + MIRc SINE MIR 4 116 -152 3 1288 40 49 0 0 chr12 92209958 92210019 -29047511 + AT_rich Low_complexity Low_complexity 1 61 0 3 1288 279 161 0 0 chr12 92210744 92210800 -29046730 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 1288 285 128 0 0 chr12 92210816 92210863 -29046667 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1288 580 211 7 72 chr12 92211554 92211692 -29045838 - B1F2 SINE Alu 0 149 21 3 1288 287 85 21 0 chr12 92211945 92211992 -29045538 + (AGGGGG)n Simple_repeat Simple_repeat 4 51 0 3 1288 411 21 0 0 chr12 92212139 92212187 -29045343 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1288 293 147 15 0 chr12 92213258 92213326 -29044204 - Lx LINE L1 0 6654 6586 3 1288 315 0 0 0 chr12 92213332 92213367 -29044163 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1288 345 210 16 25 chr12 92213388 92213510 -29044020 + Lx9 LINE L1 7523 7643 -1 3 1288 823 202 81 76 chr12 92214011 92214396 -29043134 + RLTRETN_Mm LTR ERVK 1 393 0 3 1288 4220 53 31 11 chr12 92214722 92215271 -29042259 + LTRIS2 LTR ERV1 5 564 0 3 1288 36 70 0 0 chr12 92215333 92215404 -29042126 + AT_rich Low_complexity Low_complexity 1 71 0 3 1288 617 280 13 45 chr12 92215847 92216071 -29041459 + MER20 DNA MER1_type 3 219 0 3 1288 434 286 79 43 chr12 92216341 92216480 -29041050 + ID_B1 SINE B4 81 224 0 3 1288 1068 304 28 17 chr12 92216490 92216783 -29040747 + B4 SINE B4 11 292 0 3 1288 564 106 0 0 chr12 92216865 92216950 -29040580 + (TAG)n Simple_repeat Simple_repeat 1 85 0 3 1288 1310 294 33 8 chr12 92217332 92217695 -29039835 - MTE2b LTR MaLR -7 372 1 3 1288 637 282 91 13 chr12 92217695 92217917 -29039613 - MTE2b-int LTR MaLR 0 1580 1341 3 1288 452 293 24 16 chr12 92217917 92218042 -29039488 + RSINE1 SINE B4 4 129 -36 3 1288 1427 284 140 0 chr12 92218115 92218169 -29039361 - MTE2b-int LTR MaLR -225 1355 1302 3 1288 774 0 0 0 chr12 92218169 92218255 -29039275 + (GAAA)n Simple_repeat Simple_repeat 1 86 0 3 1288 1427 284 140 0 chr12 92218255 92218636 -29038894 - MTE2b-int LTR MaLR -279 1301 861 3 1288 3695 157 32 85 chr12 92218710 92219664 -29037866 - L1_Mur3 LINE L1 -1994 3886 2983 3 1288 1397 184 0 8 chr12 92219665 92219901 -29037629 + 7SK RNA RNA 2 235 -96 3 1288 2095 186 16 5 chr12 92219901 92220339 -29037191 - L1_Mur3 LINE L1 -2884 2993 2551 3 1288 1138 305 17 6 chr12 92220339 92220726 -29036804 + Lx6 LINE L1 6525 7294 -166 3 1288 712 177 23 1 chr12 92220749 92220895 -29036635 + URR1B DNA MER1_type 79 225 0 3 1288 1040 232 194 0 chr12 92220893 92221212 -29036318 - MTD LTR MaLR 0 419 39 3 1288 3795 60 14 0 chr12 92221220 92221724 -29035806 + L1Md_F3 LINE L1 5076 5586 -297 3 1288 8019 41 5 4 chr12 92221725 92222721 -29034809 + L1Md_F3 LINE L1 5588 6584 0 3 1288 560 314 20 0 chr12 92222766 92222919 -29034611 - MTE2b-int LTR MaLR -1424 156 1 3 1288 1415 258 39 8 chr12 92222932 92223288 -29034242 - MTE2b LTR MaLR -12 367 1 3 1288 258 324 0 14 chr12 92223632 92223646 -29033884 + ID SINE ID 70 82 -142 3 1288 325 315 26 53 chr12 92223646 92223760 -29033770 + B1F2 SINE Alu 2 112 -37 3 1288 443 275 69 14 chr12 92223775 92223919 -29033611 + MLT1D LTR MaLR 35 186 -319 3 1288 337 316 15 7 chr12 92223977 92224114 -29033416 + MLT1D LTR MaLR 362 499 -6 3 1288 283 246 0 0 chr12 92224708 92224769 -29032761 + MER20 DNA MER1_type 118 178 -41 3 1288 214 303 184 0 chr12 92226688 92226797 -29030733 + MIR SINE MIR 13 141 -121 3 1288 423 149 0 0 chr12 92228508 92228582 -29028948 + (GGA)n Simple_repeat Simple_repeat 3 76 0 3 1288 245 227 30 15 chr12 92228582 92228649 -29028881 + GA-rich Low_complexity Low_complexity 3 70 0 3 1288 3483 28 0 0 chr12 92230820 92231215 -29026315 - MTA_Mm LTR MaLR 0 396 2 3 1288 247 322 33 0 chr12 92231632 92231722 -29025808 - MER5A DNA MER1_type -92 97 5 3 1288 694 271 29 12 chr12 92232922 92233160 -29024370 + B4A SINE B4 15 284 -8 3 1288 1854 267 162 40 chr12 92235295 92235598 -29021932 + Lx8 LINE L1 6345 6681 -792 3 1288 198 0 0 0 chr12 92235598 92235620 -29021910 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1288 288 0 0 0 chr12 92235622 92235654 -29021876 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1288 1854 267 162 40 chr12 92235654 92236201 -29021329 + Lx8 LINE L1 6682 7296 -177 3 1288 198 71 0 0 chr12 92238463 92238491 -29019039 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1288 238 152 17 17 chr12 92238602 92238662 -29018868 + (TAA)n Simple_repeat Simple_repeat 1 60 0 3 1288 180 0 0 0 chr12 92240872 92240892 -29016638 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1288 243 61 0 0 chr12 92241184 92241217 -29016313 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1288 2090 257 37 14 chr12 92241347 92241920 -29015610 + Lx6 LINE L1 6865 7450 -10 3 1288 678 271 67 5 chr12 92242529 92242722 -29014808 - B3 SINE B2 -11 205 1 3 1288 347 100 0 32 chr12 92242762 92242824 -29014706 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 3 1288 541 284 89 7 chr12 92242825 92242960 -29014570 - RSINE1 SINE B4 -17 148 3 3 1288 8118 27 0 0 chr12 92242964 92244163 -29013367 - L1Md_T LINE L1 0 6582 5411 3 1288 6699 15 1 0 chr12 92244152 92244962 -29012568 + L1Md_T LINE L1 4603 5413 -470 3 1288 1254 34 0 0 chr12 92247813 92247960 -29009570 + B1_Mm SINE Alu 1 147 0 3 1288 267 103 0 0 chr12 92247960 92247999 -29009531 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1288 23 68 0 0 chr12 92248127 92248171 -29009359 + AT_rich Low_complexity Low_complexity 1 44 0 3 1288 304 361 25 25 chr12 92248801 92248963 -29008567 - RSINE1 SINE B4 -2 163 2 3 1288 1426 69 32 0 chr12 92248983 92249172 -29008358 - B2_Mm2 SINE B2 0 195 1 3 1288 440 239 127 57 chr12 92249834 92250204 -29007326 - L1M4 LINE L1 -3170 2976 2582 3 1288 367 284 172 100 chr12 92250457 92250576 -29006954 + B3A SINE B2 1 150 -48 3 1288 366 23 0 0 chr12 92250576 92250619 -29006911 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1288 367 284 172 100 chr12 92250619 92250679 -29006851 + B3A SINE B2 151 193 -5 3 1288 25 0 0 0 chr12 92253869 92253894 -29003636 + AT_rich Low_complexity Low_complexity 1 25 0 3 1288 180 0 0 0 chr12 92254724 92254744 -29002786 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1288 284 293 63 31 chr12 92254744 92254871 -29002659 - MER58B DNA MER1_type -23 318 188 3 1288 774 191 100 11 chr12 92254897 92255077 -29002453 - MTC LTR MaLR -45 376 181 3 1288 319 246 0 0 chr12 92255085 92255146 -29002384 - B4A SINE B4 -213 79 19 4 1288 21 0 0 0 chr12 92255177 92255198 -29002332 + AT_rich Low_complexity Low_complexity 1 21 0 4 1288 1146 171 0 15 chr12 92255225 92255421 -29002109 - MTC LTR MaLR -228 193 1 3 1288 451 132 13 13 chr12 92255421 92255498 -29002032 - MTD LTR MaLR -342 77 1 4 1288 375 60 0 0 chr12 92256823 92256873 -29000657 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1288 369 0 0 0 chr12 92256877 92256918 -29000612 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1288 639 277 15 75 chr12 92256918 92257112 -29000418 + MER20 DNA MER1_type 8 189 -30 4 1288 1138 105 0 12 chr12 92257906 92258079 -28999451 + B2_Mm2 SINE B2 1 171 -24 4 1288 239 125 0 40 chr12 92259063 92259113 -28998417 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 4 1288 223 221 18 0 chr12 92259323 92259379 -28998151 + MIRc SINE MIR 109 162 -106 4 1288 23 33 0 0 chr12 92259432 92259462 -28998068 + AT_rich Low_complexity Low_complexity 1 30 0 4 1288 1146 116 12 0 chr12 92261885 92262057 -28995473 - B2_Mm2 SINE B2 -19 176 3 4 1288 27 0 0 0 chr12 92262933 92262960 -28994570 + AT_rich Low_complexity Low_complexity 1 27 0 4 1288 234 0 0 0 chr12 92263471 92263497 -28994033 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1288 294 29 0 0 chr12 92263498 92263533 -28993997 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1288 268 214 0 18 chr12 92263778 92263835 -28993695 + CT-rich Low_complexity Low_complexity 4 59 0 4 1288 486 0 0 0 chr12 92264087 92264141 -28993389 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1288 459 0 0 0 chr12 92264405 92264456 -28993074 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1288 344 314 29 0 chr12 92264594 92264696 -28992834 + PB1D10 SINE Alu 5 109 -8 4 1288 189 26 79 0 chr12 92265118 92265156 -28992374 + (CAAAC)n Simple_repeat Simple_repeat 5 45 0 4 1288 1820 287 78 18 chr12 92266658 92267379 -28990151 + Lx8 LINE L1 6689 7452 -21 4 1288 321 196 37 31 chr12 92268205 92268368 -28989162 + RMER17C LTR ERVK 112 275 -135 4 1288 432 0 0 0 chr12 92269078 92269126 -28988404 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1288 1089 240 82 14 chr12 92269629 92269921 -28987609 + RMER5 LTR ERV1 109 420 -114 4 2 31821 63 8 7 chr12 92270290 92275236 -28982294 + L1Md_F3 LINE L1 643 5586 -297 4 1289 8040 31 24 3 chr12 92275237 92276212 -28981318 + L1Md_F3 LINE L1 5588 6582 -2 4 1289 871 279 10 24 chr12 92276235 92276444 -28981086 - B4A SINE B4 -76 216 11 4 1289 219 333 13 0 chr12 92277480 92277558 -28979972 - ID2 SINE ID -3 80 2 4 1289 238 336 61 17 chr12 92277881 92277996 -28979534 + MIR3 SINE MIR 2 121 -87 4 1289 440 263 23 7 chr12 92278125 92278431 -28979099 + (TG)n Simple_repeat Simple_repeat 1 311 0 4 1289 382 351 22 44 chr12 92278927 92279109 -28978421 + MIR SINE MIR 4 181 -81 4 1289 258 326 20 0 chr12 92281157 92281255 -28976275 - MLT1A LTR MaLR -16 358 259 4 1289 226 206 45 45 chr12 92281282 92281348 -28976182 - MLT1A LTR MaLR -285 80 15 4 1289 2011 104 7 7 chr12 92281631 92281898 -28975632 - L1_Mus1 LINE L1 -489 6078 5811 4 1289 3738 73 41 0 chr12 92281898 92282361 -28975169 + L1_Mus1 LINE L1 6086 6567 0 4 1289 2011 104 7 7 chr12 92282361 92282392 -28975138 - L1_Mus1 LINE L1 -757 5810 5781 4 1289 544 278 247 22 chr12 92282622 92282946 -28974584 - Looper DNA PiggyBac -3 1555 1159 4 1289 529 283 147 22 chr12 92283087 92283318 -28974212 + B4A SINE B4 9 268 -24 4 1289 548 284 125 21 chr12 92283362 92283548 -28973982 - Looper DNA PiggyBac -788 770 563 4 1289 2447 157 12 17 chr12 92283548 92283957 -28973573 + MTB_Mm LTR MaLR 1 407 0 4 1289 548 284 125 21 chr12 92283957 92284058 -28973472 - Looper DNA PiggyBac -996 562 454 4 1289 2465 107 3 3 chr12 92284167 92284494 -28973036 + ORR1A2 LTR MaLR 1 327 0 4 1289 2382 211 11 98 chr12 92284507 92285076 -28972454 + Lx6 LINE L1 6741 7259 -201 4 1289 421 296 19 0 chr12 92285150 92285258 -28972272 + Lx7 LINE L1 7199 7308 -388 4 1289 573 162 21 35 chr12 92285516 92285657 -28971873 + RCHARR1 DNA MER1_type 383 521 -453 4 1289 192 40 0 0 chr12 92286334 92286359 -28971171 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 4 1289 198 316 38 50 chr12 92288069 92288149 -28969381 - MIR SINE MIR -143 119 41 4 1289 270 0 0 0 chr12 92290345 92290375 -28967155 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1289 323 326 81 7 chr12 92290384 92290520 -28967010 - B4A SINE B4 -22 270 125 4 1289 1380 275 239 21 chr12 92290737 92291469 -28966061 + Lx8 LINE L1 6232 7122 -351 4 1289 1213 102 66 0 chr12 92291469 92291635 -28965895 + B2_Mm1t SINE B2 3 179 -14 4 1289 197 33 33 0 chr12 92291711 92291741 -28965789 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1289 1887 185 149 70 chr12 92291894 92292564 -28964966 + Lx7 LINE L1 6856 7684 -12 4 1289 1882 60 39 0 chr12 92292583 92292817 -28964713 + L1_Mus1 LINE L1 6324 6566 -1 4 1289 3018 279 79 21 chr12 92293098 92294166 -28963364 + Lx8 LINE L1 6197 7326 -147 4 1289 1799 186 72 8 chr12 92294290 92294762 -28962768 + Lx4B LINE L1 6457 6976 0 4 1289 731 276 79 30 chr12 92295179 92295482 -28962048 - Charlie2b DNA MER1_type -716 2066 1749 4 1289 25 0 0 0 chr12 92295828 92295853 -28961677 + AT_rich Low_complexity Low_complexity 1 25 0 4 1289 400 340 127 37 chr12 92295949 92296405 -28961125 - L1M5 LINE L1 -2282 3864 3368 4 1289 292 267 124 30 chr12 92296635 92296836 -28960694 - L1M5 LINE L1 -3106 3040 2821 4 1289 183 42 0 0 chr12 92296836 92296860 -28960670 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1289 240 294 15 0 chr12 92298129 92298197 -28959333 + C-rich Low_complexity Low_complexity 1 69 0 4 1289 321 275 45 9 chr12 92298206 92298316 -28959214 + LTR37A LTR ERV1 283 396 -30 4 1289 188 325 23 57 chr12 92299074 92299162 -28958368 - L2a LINE L2 -5 3421 3337 4 1289 24 32 0 0 chr12 92300383 92300414 -28957116 + AT_rich Low_complexity Low_complexity 1 31 0 4 1289 397 250 0 0 chr12 92300738 92300814 -28956716 - ID4 SINE ID -6 77 2 4 1289 475 270 35 0 chr12 92303438 92303553 -28953977 + RSINE1 SINE B4 35 153 -12 4 1289 894 56 16 24 chr12 92303749 92303876 -28953654 + B1_Mus1 SINE Alu 23 148 0 4 1289 200 0 100 0 chr12 92303876 92303906 -28953624 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1289 387 0 0 0 chr12 92304677 92304720 -28952810 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1289 666 288 164 0 chr12 92305677 92305927 -28951603 - B4A SINE B4 0 292 2 4 1289 320 0 25 0 chr12 92306087 92306127 -28951403 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1289 279 0 0 0 chr12 92306664 92306695 -28950835 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1289 6566 114 28 3 chr12 92307318 92308293 -28949237 + Lx LINE L1 5656 6654 0 4 1289 351 0 0 0 chr12 92308302 92308341 -28949189 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1289 182 171 0 24 chr12 92308341 92308383 -28949147 + GA-rich Low_complexity Low_complexity 2 42 0 4 1289 505 261 172 13 chr12 92310458 92310691 -28946839 + MER58B DNA MER1_type 1 270 -71 4 1289 291 54 0 0 chr12 92310861 92310898 -28946632 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1289 317 229 0 0 chr12 92311801 92311862 -28945668 - PB1D10 SINE Alu -24 93 33 4 1289 184 263 52 17 chr12 92312820 92312878 -28944652 + L3b LINE CR1 93 152 -330 4 1289 437 161 0 11 chr12 92313300 92313388 -28944142 + GA-rich Low_complexity Low_complexity 2 88 0 4 1289 245 336 93 9 chr12 92313501 92313609 -28943921 + MIRb SINE MIR 121 237 -31 4 1289 251 217 56 28 chr12 92313714 92313785 -28943745 - PB1D7 SINE Alu -1 119 47 4 1289 2113 42 4 0 chr12 92314844 92315104 -28942426 - RLTR10-int LTR ERVK -1686 301 41 4 1289 3025 20 0 226 chr12 92315114 92315618 -28941912 - RLTR10 LTR ERVK 0 390 1 4 1289 11378 86 57 60 chr12 92315620 92317570 -28939960 - RLTR10-int LTR ERVK -3 1984 41 4 1289 3036 18 0 226 chr12 92317580 92318084 -28939446 - RLTR10 LTR ERVK 0 390 1 4 1289 21 0 0 0 chr12 92319471 92319492 -28938038 + AT_rich Low_complexity Low_complexity 1 21 0 4 1289 205 242 15 29 chr12 92319813 92319881 -28937649 + GA-rich Low_complexity Low_complexity 2 68 0 4 1289 935 55 0 8 chr12 92321050 92321177 -28936353 + (CTATG)n Simple_repeat Simple_repeat 3 128 0 4 1289 307 293 36 12 chr12 92322883 92322966 -28934564 + AmnSINE1 SINE SINE 1 85 -490 4 1289 265 325 53 76 chr12 92323609 92323872 -28933658 + MLT1H LTR MaLR 206 462 -87 4 1289 472 237 113 19 chr12 92326446 92326605 -28930925 + MER2 DNA MER2_type 86 259 -86 4 1289 21 36 0 0 chr12 92326714 92326742 -28930788 + AT_rich Low_complexity Low_complexity 1 28 0 4 1289 997 231 126 56 chr12 92327772 92328185 -28929345 - RMER10A LTR ERVL 0 442 1 4 1289 436 294 0 16 chr12 92328403 92328524 -28929006 + MLT1D LTR MaLR 252 370 -135 4 1289 359 297 65 11 chr12 92329446 92329630 -28927900 + L1MDa LINE L1 1601 1794 -4839 4 1289 229 290 112 31 chr12 92329667 92329777 -28927753 + L1MDa LINE L1 1855 1969 -4664 4 1289 867 140 34 122 chr12 92329777 92329981 -28927549 + B2_Mm2 SINE B2 5 190 -5 4 1289 229 290 112 31 chr12 92329981 92330094 -28927436 + L1MDa LINE L1 1970 2096 -4537 4 1289 805 248 22 36 chr12 92330103 92330325 -28927205 + B4 SINE B4 5 223 -69 4 1289 1411 241 19 109 chr12 92330571 92330985 -28926545 + MTE2a LTR MaLR 3 379 0 4 1289 251 226 0 0 chr12 92331098 92331160 -28926370 + L1M5 LINE L1 5717 5778 -401 4 1289 5180 201 46 78 chr12 92331577 92332929 -28924601 + Lx9 LINE L1 6333 7641 -3 4 1289 582 281 19 109 chr12 92333350 92333670 -28923860 + B4A SINE B4 2 292 0 4 1289 596 317 111 50 chr12 92333961 92334305 -28923225 - ORR1E LTR MaLR -2 368 4 4 1289 182 197 77 62 chr12 92335546 92335611 -28921919 + MER5B DNA MER1_type 78 143 -35 4 1289 624 116 0 0 chr12 92337573 92337668 -28919862 + (TA)n Simple_repeat Simple_repeat 1 95 0 4 1289 922 264 41 25 chr12 92337706 92338062 -28919468 + MT2A LTR ERVL 3 481 -52 4 1289 212 224 15 0 chr12 92338068 92338135 -28919395 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1289 306 0 0 0 chr12 92338154 92338188 -28919342 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1289 353 372 77 52 chr12 92339065 92339414 -28918116 + MLT1A1 LTR MaLR 9 366 -42 4 1289 24 32 0 0 chr12 92339674 92339705 -28917825 + AT_rich Low_complexity Low_complexity 1 31 0 4 1289 420 302 149 27 chr12 92340123 92340344 -28917186 - MamSINE1 SINE tRNA -32 258 11 5 1289 607 241 96 87 chr12 92341131 92341454 -28916076 - RMER1C Other Other -1 1341 1016 5 1289 2401 213 115 10 chr12 92341430 92342055 -28915475 - RMER1B Other Other -4 1062 372 5 1289 648 300 43 35 chr12 92342054 92342310 -28915220 - RMER1C Other Other -287 1055 798 5 1289 567 71 0 0 chr12 92343716 92343801 -28913729 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1289 279 0 0 0 chr12 92343803 92343834 -28913696 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1289 5798 81 16 12 chr12 92343846 92344625 -28912905 + Lx3A LINE L1 6165 6953 -28 5 1289 2971 58 0 21 chr12 92344625 92344998 -28912532 + RLTR10B2 LTR ERVK 1 365 0 5 1289 5798 81 16 12 chr12 92344998 92345026 -28912504 + Lx3A LINE L1 6954 6975 -6 5 1289 231 282 99 0 chr12 92345283 92345354 -28912176 + ID2 SINE ID 2 79 -4 5 1289 2382 218 46 49 chr12 92346147 92346803 -28910727 + Lx6 LINE L1 6293 6946 -514 5 1289 823 268 33 0 chr12 92346976 92347159 -28910371 - B3 SINE B2 -14 202 14 5 1289 285 307 145 5 chr12 92347911 92348104 -28909426 - MIRb SINE MIR -8 260 41 5 1289 625 255 25 15 chr12 92348441 92348644 -28908886 + Lx6 LINE L1 7230 7434 -26 5 1289 2276 156 57 10 chr12 92349548 92349950 -28907580 - MTC LTR MaLR 0 421 1 5 1289 6310 149 69 22 chr12 92349950 92351152 -28906378 - MTC-int LTR MaLR 0 1258 1 5 1289 1911 166 50 65 chr12 92351152 92351552 -28905978 - MTC LTR MaLR 0 394 1 5 1289 960 175 0 138 chr12 92351862 92352087 -28905443 + ORR1B1 LTR MaLR 120 313 -81 5 1289 207 69 0 0 chr12 92352322 92352351 -28905179 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1289 280 324 113 42 chr12 92352843 92353056 -28904474 + RMER5 LTR ERV1 33 260 -274 5 1289 239 342 0 0 chr12 92354095 92354174 -28903356 - MER58B DNA MER1_type -15 326 248 5 1289 230 132 26 0 chr12 92354567 92354605 -28902925 + Charlie24 DNA MER1_type 2395 2433 -17 5 1289 186 167 0 0 chr12 92355762 92355798 -28901732 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1289 28949 21 5 1 chr12 92355815 92360016 -28897514 - L1Md_T LINE L1 -1 6581 2358 5 1289 282 56 0 0 chr12 92361720 92361756 -28895774 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1289 345 197 0 0 chr12 92361756 92361827 -28895703 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 1289 180 214 0 45 chr12 92361886 92361930 -28895600 + L4 LINE RTE 975 1016 -1013 5 1289 207 100 0 0 chr12 92362061 92362091 -28895439 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1289 238 261 21 93 chr12 92363002 92363099 -28894431 + MT2B2 LTR ERVL 152 241 -343 5 1289 524 323 0 0 chr12 92363027 92363157 -28894373 + B1F1 SINE Alu 15 144 -5 5 1289 22 56 0 0 chr12 92363430 92363466 -28894064 + AT_rich Low_complexity Low_complexity 1 36 0 5 1289 3357 51 11 42 chr12 92363474 92363921 -28893609 - L1_Mus2 LINE L1 0 6566 6134 5 1289 429 20 0 0 chr12 92364002 92364052 -28893478 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 5 1289 764 243 69 10 chr12 92364839 92365043 -28892487 - ID_B1 SINE B4 -6 218 3 5 1289 186 143 0 0 chr12 92365652 92365687 -28891843 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 1289 199 306 93 12 chr12 92366828 92366914 -28890616 - L2a LINE L2 -4 3422 3330 5 1289 580 321 38 38 chr12 92367118 92367409 -28890121 + B4A SINE B4 2 292 0 5 1289 395 333 51 76 chr12 92367959 92368196 -28889334 + MLT1D LTR MaLR 3 233 -272 5 1289 23 54 0 0 chr12 92369719 92369756 -28887774 + AT_rich Low_complexity Low_complexity 1 37 0 5 1289 279 0 0 0 chr12 92370241 92370272 -28887258 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1289 414 0 0 0 chr12 92370272 92370317 -28887213 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1289 1229 288 57 6 chr12 92372193 92372511 -28885019 + MTD LTR MaLR 1 333 -86 5 1289 234 0 0 0 chr12 92372511 92372537 -28884993 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1289 1229 288 57 6 chr12 92372537 92372567 -28884963 + MTD LTR MaLR 334 367 -52 5 1289 315 49 0 0 chr12 92374083 92374124 -28883406 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1289 455 333 38 25 chr12 92374127 92374284 -28883246 - RSINE1 SINE B4 -1 164 6 5 1289 304 347 19 34 chr12 92374347 92374553 -28882977 - L1M6 LINE L1 -5456 1040 838 5 1289 750 250 11 22 chr12 92374586 92374766 -28882764 + MER20 DNA MER1_type 37 214 -5 5 1289 727 176 220 21 chr12 92375095 92375281 -28882249 + URR1A DNA MER1_type 1 223 -3 5 1289 22 0 0 0 chr12 92375909 92375931 -28881599 + AT_rich Low_complexity Low_complexity 1 22 0 5 1289 3071 62 33 9 chr12 92376154 92376576 -28880954 + L1_Mus3 LINE L1 6202 6633 -5 5 1289 768 166 0 0 chr12 92376589 92376728 -28880802 + GA-rich Low_complexity Low_complexity 2 140 0 5 1289 311 256 111 0 chr12 92376881 92376971 -28880559 + L1M2 LINE L1 2784 2883 -3260 5 1289 625 243 0 48 chr12 92376990 92377137 -28880393 + B1_Mur2 SINE Alu 2 141 -8 5 1289 284 64 21 0 chr12 92377237 92377284 -28880246 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1289 405 263 61 47 chr12 92377464 92377736 -28879794 + L1M4c LINE L1 2765 3045 -3800 5 1289 420 307 156 12 chr12 92377736 92377993 -28879537 + L1M4c LINE L1 3464 3757 -3088 5 1289 2830 26 6 192 chr12 92378184 92378663 -28878867 + RLTR10 LTR ERVK 1 390 0 5 1289 15504 34 5 32 chr12 92378664 92380719 -28876811 + RLTR10-int LTR ERVK 9 1984 -3 5 1289 2865 21 6 192 chr12 92380721 92381200 -28876330 + RLTR10 LTR ERVK 1 390 0 5 1289 21 0 0 0 chr12 92383217 92383238 -28874292 + AT_rich Low_complexity Low_complexity 1 21 0 5 1289 315 0 0 0 chr12 92383986 92384021 -28873509 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1289 372 365 66 54 chr12 92384256 92384414 -28873116 + L3 LINE CR1 833 1001 -3488 5 1289 7594 103 24 3 chr12 92384414 92385557 -28871973 + Lx2 LINE L1 5828 6994 -3 5 1289 372 365 66 54 chr12 92385557 92385656 -28871874 + L3 LINE CR1 1002 1093 -3396 5 1289 226 197 152 0 chr12 92385874 92385940 -28871590 + Lx5 LINE L1 6975 7050 0 5 1289 283 246 0 91 chr12 92386203 92386400 -28871130 + (CAGAG)n Simple_repeat Simple_repeat 2 180 0 5 1289 216 295 0 92 chr12 92386398 92386551 -28870979 + (CAGGG)n Simple_repeat Simple_repeat 2 140 0 5 1289 189 0 0 0 chr12 92386749 92386770 -28870760 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1289 274 239 28 0 chr12 92386772 92386843 -28870687 - RMER20A LTR ERVK -132 384 312 5 1289 24 53 0 0 chr12 92386964 92387002 -28870528 + AT_rich Low_complexity Low_complexity 1 38 0 5 1289 272 25 0 48 chr12 92387888 92387930 -28869600 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 1289 288 0 0 0 chr12 92391675 92391707 -28865823 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1289 497 279 180 0 chr12 92392034 92392195 -28865335 - B4A SINE B4 -102 190 1 5 1289 1384 177 0 17 chr12 92394039 92394269 -28863261 - URR1A DNA MER1_type 0 226 1 5 1289 570 79 0 0 chr12 92394631 92394720 -28862810 + (CAGG)n Simple_repeat Simple_repeat 2 90 0 5 1289 5194 68 9 3 chr12 92395783 92396429 -28861101 + L1Md_F2 LINE L1 5933 6582 0 5 1289 380 330 58 39 chr12 92396463 92396668 -28860862 + B4 SINE B4 1 209 -83 5 1289 322 263 257 22 chr12 92396811 92396990 -28860540 + HAL1-3A_ME LINE L1 1991 2211 -647 5 1289 3276 17 0 0 chr12 92397795 92398141 -28859389 - ORR1A0 LTR MaLR 0 346 1 5 1289 1456 51 79 0 chr12 92398788 92398948 -28858582 + B2_Mm1t SINE B2 1 160 -33 5 1289 279 0 0 0 chr12 92398948 92398979 -28858551 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 1289 1456 51 79 0 chr12 92398979 92398995 -28858535 + B2_Mm1t SINE B2 161 189 -4 5 1289 444 221 0 0 chr12 92399950 92400036 -28857494 + B3A SINE B2 2 87 -111 5 1289 333 339 93 44 chr12 92400233 92400715 -28856815 - L1M3 LINE L1 -538 5774 5269 5 1289 227 350 0 0 chr12 92401111 92401171 -28856359 - ID4 SINE ID -13 70 11 5 1289 239 309 0 0 chr12 92401214 92401298 -28856232 - L1M3 LINE L1 -1361 4779 4696 5 1289 422 320 74 0 chr12 92401301 92401504 -28856026 + L1M3 LINE L1 4511 4728 -1415 5 1289 268 318 0 0 chr12 92401505 92401593 -28855937 + (CACCT)n Simple_repeat Simple_repeat 5 92 0 5 1289 516 279 23 8 chr12 92401711 92401841 -28855689 + B4 SINE B4 1 132 -160 5 161 39335 8 0 1 chr12 92402404 92408191 -28849339 + L1Md_A LINE L1 1 5586 -297 5 1290 9610 3 0 0 chr12 92408191 92409187 -28848343 + L1Md_A LINE L1 5587 6582 0 5 1290 341 365 61 11 chr12 92409288 92409468 -28848062 - Charlie25 DNA MER1_type -207 2317 2129 5 1290 358 299 17 8 chr12 92409682 92409800 -28847730 - PB1D9 SINE Alu -1 119 1 5 1290 198 91 0 0 chr12 92411082 92411115 -28846415 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1290 344 338 36 14 chr12 92412294 92412315 -28845215 + ID_B1 SINE B4 76 216 -8 5 1290 400 274 60 0 chr12 92412315 92412432 -28845098 + B1F SINE Alu 18 141 -8 5 1290 818 252 106 26 chr12 92412451 92412481 -28845049 + Lx5 LINE L1 5725 5752 -902 5 1290 1236 263 100 58 chr12 92412481 92412669 -28844861 - MTD LTR MaLR -3 416 225 5 1290 297 0 0 0 chr12 92412669 92412702 -28844828 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1290 1236 263 100 58 chr12 92412702 92412912 -28844618 - MTD LTR MaLR -195 224 2 5 1290 5583 200 74 20 chr12 92412912 92414139 -28843391 + Lx5 LINE L1 5752 7042 -8 5 1290 736 115 10 0 chr12 92414273 92414377 -28843153 + Lx LINE L1 5902 6006 -648 5 1290 956 141 53 0 chr12 92414419 92414589 -28842941 + Lx LINE L1 6470 6648 -6 5 1290 6968 126 3 5 chr12 92414585 92415575 -28841955 + Lx2 LINE L1 6010 6997 0 5 1290 1190 88 0 0 chr12 92416818 92416965 -28840565 + B1_Mus2 SINE Alu 1 147 0 5 1290 234 0 0 0 chr12 92416965 92416991 -28840539 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1290 227 31 0 30 chr12 92416996 92417029 -28840501 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 5 1290 2361 160 3 0 chr12 92417725 92418113 -28839417 - L1_Mm LINE L1 -750 5133 4745 5 1290 7755 84 14 6 chr12 92418111 92419356 -28838174 + L1_Mus4 LINE L1 5376 6630 -6 5 1290 23 54 0 0 chr12 92420498 92420535 -28836995 + AT_rich Low_complexity Low_complexity 1 37 0 5 1290 515 178 6 0 chr12 92421634 92421803 -28835727 + (CA)n Simple_repeat Simple_repeat 1 170 0 5 1290 233 393 8 0 chr12 92423755 92423872 -28833658 + L2a LINE L2 3000 3117 -309 5 1290 997 269 24 31 chr12 92424905 92425196 -28832334 - B4 SINE B4 0 292 4 5 1290 2463 148 39 15 chr12 92425443 92425854 -28831676 - MTC LTR MaLR 0 421 1 5 1290 1789 234 34 7 chr12 92425964 92426372 -28831158 + MTD LTR MaLR 1 419 0 5 1290 267 54 0 0 chr12 92426427 92426464 -28831066 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 6 1290 2451 136 5 17 chr12 92426821 92427225 -28830305 + MTB_Mm LTR MaLR 1 399 -8 6 1290 23 0 0 0 chr12 92427484 92427507 -28830023 + AT_rich Low_complexity Low_complexity 1 23 0 6 1290 241 243 26 39 chr12 92428104 92428181 -28829349 - L1MD LINE L1 -777 5582 5507 6 1290 7599 56 26 9 chr12 92428801 92429795 -28827735 - L1Md_F2 LINE L1 -23 6559 5549 6 1290 276 254 0 0 chr12 92430020 92430079 -28827451 - ID SINE ID -160 64 6 6 1290 1205 124 62 0 chr12 92430779 92430956 -28826574 - B2_Mm1t SINE B2 -3 190 3 6 1290 2503 249 87 21 chr12 92431110 92431780 -28825750 + Lx6 LINE L1 6742 7455 -5 6 1290 252 246 0 0 chr12 92434422 92434491 -28823039 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1290 27 0 0 0 chr12 92435348 92435375 -28822155 + AT_rich Low_complexity Low_complexity 1 27 0 6 1290 766 329 8 33 chr12 92435677 92435919 -28821611 + B4A SINE B4 57 292 0 6 1290 840 239 49 115 chr12 92436054 92436342 -28821188 - B4 SINE B4 -23 269 1 6 1290 300 256 76 71 chr12 92436411 92436609 -28820921 - Tigger7 DNA MER2_type -22 2469 2271 6 1290 270 293 50 10 chr12 92436599 92436699 -28820831 - Tigger7 DNA MER2_type -2370 121 18 6 1290 259 297 58 7 chr12 92436941 92437080 -28820450 - L1MB8 LINE L1 -1 6177 6032 6 1290 313 304 115 76 chr12 92437182 92437339 -28820191 - RSINE1 SINE B4 0 165 3 6 1290 265 246 73 41 chr12 92437446 92437569 -28819961 - L1MB8 LINE L1 -289 5889 5763 6 1290 697 277 128 30 chr12 92437944 92438249 -28819281 - L1MB8 LINE L1 -437 5747 5413 6 1290 307 194 39 77 chr12 92438252 92438330 -28819200 + B1_Mur4 SINE Alu 76 150 0 6 1290 234 188 0 0 chr12 92438330 92438378 -28819152 + A-rich Low_complexity Low_complexity 1 48 0 6 1290 207 88 0 0 chr12 92439854 92439888 -28817642 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 6 1290 622 248 23 0 chr12 92439893 92440022 -28817508 - B1_Mur3 SINE Alu -13 136 5 6 1290 314 286 163 27 chr12 92440219 92440505 -28817025 + MER33 DNA MER1_type 5 323 -1 6 1290 461 144 0 11 chr12 92440803 92440894 -28816636 + GA-rich Low_complexity Low_complexity 4 93 0 6 1290 5449 63 25 10 chr12 92441225 92441909 -28815621 + L1Md_F2 LINE L1 5888 6581 -1 6 1290 182 37 37 0 chr12 92442136 92442163 -28815367 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 6 1290 216 0 0 0 chr12 92442261 92442285 -28815245 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 6 1290 22 0 0 0 chr12 92443714 92443736 -28813794 + AT_rich Low_complexity Low_complexity 1 22 0 6 1290 593 256 0 67 chr12 92445179 92445313 -28812217 - B1_Mur1 SINE Alu -11 138 14 6 1290 200 315 96 70 chr12 92445620 92445777 -28811753 + MIRb SINE MIR 50 210 -58 6 1290 2040 195 113 40 chr12 92445986 92446148 -28811382 + RMER1B Other Other 476 634 -432 6 1290 3385 43 2 0 chr12 92446148 92446543 -28810987 - MTA_Mm LTR MaLR 0 396 1 6 1290 2040 195 113 40 chr12 92446543 92446929 -28810601 + RMER1B Other Other 635 1064 -2 6 1290 415 314 36 22 chr12 92447028 92447165 -28810365 + B3 SINE B2 3 141 -75 6 1290 454 235 33 57 chr12 92447177 92447299 -28810231 + MLT2B1 LTR ERVL 65 183 -337 6 1290 846 147 18 47 chr12 92447299 92447427 -28810103 - URR1A DNA MER1_type -1 225 101 6 1290 1623 217 97 25 chr12 92447427 92447755 -28809775 + RMER4A LTR ERVK 1 347 -119 6 1290 324 0 0 0 chr12 92447755 92447791 -28809739 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1290 690 13 0 0 chr12 92447791 92447869 -28809661 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1290 1623 217 97 25 chr12 92447869 92447974 -28809556 + RMER4A LTR ERVK 348 465 -1 6 1290 846 147 18 47 chr12 92447974 92448016 -28809514 - URR1A DNA MER1_type -126 100 60 6 1290 354 219 14 14 chr12 92449142 92449236 -28808294 + B1_Mur1 SINE Alu 56 149 0 6 1290 981 94 0 0 chr12 92449245 92449405 -28808125 + (TG)n Simple_repeat Simple_repeat 2 161 0 6 1290 202 271 114 34 chr12 92450380 92450468 -28807062 - L2a LINE L2 -24 3402 3308 6 1290 306 0 0 0 chr12 92450650 92450684 -28806846 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1290 220 312 113 65 chr12 92451490 92451658 -28805872 + L2a LINE L2 3247 3422 -4 6 1290 270 0 0 0 chr12 92451725 92451755 -28805775 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1290 279 0 0 0 chr12 92451755 92451785 -28805745 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1290 204 294 0 0 chr12 92451866 92451917 -28805613 + GA-rich Low_complexity Low_complexity 1 51 0 6 1290 487 303 91 26 chr12 92453036 92453544 -28803986 + L1MB8 LINE L1 5563 6103 -75 6 1290 447 73 0 0 chr12 92453573 92453641 -28803889 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1290 964 299 41 0 chr12 92453642 92453886 -28803644 - B4A SINE B4 -28 264 11 6 1290 351 0 0 0 chr12 92454212 92454251 -28803279 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1290 266 0 0 29 chr12 92455693 92455728 -28801802 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1290 1646 319 99 41 chr12 92455768 92456860 -28800670 + Lx9 LINE L1 6415 7569 -75 6 1290 459 130 0 0 chr12 92458084 92458161 -28799369 + (GGA)n Simple_repeat Simple_repeat 3 79 0 6 1290 330 294 119 60 chr12 92458504 92458739 -28798791 + MLT1B LTR MaLR 127 375 -15 6 1290 247 289 26 0 chr12 92459589 92459665 -28797865 - ID2 SINE ID -2 81 4 6 1290 321 245 85 38 chr12 92459670 92459776 -28797754 - PB1D7 SINE Alu 0 120 10 6 1290 19815 18 0 0 chr12 92459797 92462944 -28794586 - L1Md_T LINE L1 0 6582 3460 6 1290 907 245 10 0 chr12 92464763 92464963 -28792567 - B3 SINE B2 -12 204 3 6 1290 213 156 22 0 chr12 92465446 92465491 -28792039 + (CAAT)n Simple_repeat Simple_repeat 1 46 0 6 1290 3119 39 57 0 chr12 92465984 92466373 -28791157 + IAPLTR2a LTR ERVK 1 411 0 6 1290 890 99 87 71 chr12 92466374 92466558 -28790972 + IAPEz-int LTR ERVK 9 195 -6286 6 1290 248 302 0 0 chr12 92466558 92466611 -28790919 + RLTR27 LTR ERVK 223 275 -34 6 1290 3652 61 2 18 chr12 92466611 92467114 -28790416 + IAPEz-int LTR ERVK 168 662 -5819 6 1290 2180 47 0 0 chr12 92467114 92467392 -28790138 + IAPEz-int LTR ERVK 1359 1636 -4845 6 1290 5292 61 13 20 chr12 92467391 92468140 -28789390 + IAPEz-int LTR ERVK 5736 6479 -2 6 1290 3114 48 35 0 chr12 92468142 92468539 -28788991 + IAPLTR2a LTR ERVK 1 411 0 6 1290 465 244 8 34 chr12 92468826 92468945 -28788585 + B1_Mur1 SINE Alu 34 149 0 6 1290 378 61 0 0 chr12 92468953 92469002 -28788528 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1290 222 105 0 0 chr12 92469003 92469041 -28788489 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 6 1290 243 256 0 0 chr12 92469041 92469131 -28788399 + (TGGG)n Simple_repeat Simple_repeat 3 92 0 6 1290 189 74 0 0 chr12 92469134 92469161 -28788369 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1290 297 75 0 0 chr12 92469474 92469514 -28788016 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1290 1161 75 0 0 chr12 92469514 92469661 -28787869 - B1_Mm SINE Alu 0 147 1 6 1290 304 299 107 43 chr12 92470462 92470602 -28786928 - B1_Mur2 SINE Alu 0 149 1 6 1290 1167 210 5 0 chr12 92475024 92475238 -28782292 + B3 SINE B2 1 215 -1 6 1290 290 206 0 0 chr12 92475242 92475315 -28782215 - Lx6 LINE L1 -1 7459 7387 6 1290 2446 203 107 20 chr12 92475920 92476474 -28781056 - RMER20B LTR ERVK -25 602 1 6 1290 278 340 41 48 chr12 92476478 92476623 -28780907 + B1F1 SINE Alu 4 147 -2 6 1290 863 175 0 7 chr12 92476652 92476790 -28780740 + B1_Mur2 SINE Alu 1 137 -12 6 1290 711 0 0 0 chr12 92476790 92476869 -28780661 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 6 1290 294 143 0 0 chr12 92476872 92476921 -28780609 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 6 1290 22 0 0 0 chr12 92477329 92477351 -28780179 + AT_rich Low_complexity Low_complexity 1 22 0 6 1290 180 111 0 0 chr12 92477787 92477814 -28779716 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1290 360 262 142 0 chr12 92477814 92477955 -28779575 + RSINE1 SINE B4 5 165 0 6 1290 197 0 71 0 chr12 92478547 92478575 -28778955 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1290 346 70 0 78 chr12 92478583 92478660 -28778870 + (T)n Simple_repeat Simple_repeat 1 71 0 6 1290 1194 42 0 0 chr12 92478672 92478815 -28778715 - B1_Mus1 SINE Alu -5 143 1 6 1290 31940 72 0 16 chr12 92478905 92484014 -28773516 + L1Md_F2 LINE L1 561 5586 -297 6 1290 8034 49 4 2 chr12 92484015 92485008 -28772522 + L1Md_F2 LINE L1 5588 6582 0 6 1290 3673 20 121 0 chr12 92486315 92486755 -28770775 + MT2_Mm LTR ERVL 1 493 0 6 1290 717 283 40 100 chr12 92486955 92487047 -28770483 + B4A SINE B4 57 141 -151 6 1290 562 206 72 14 chr12 92487047 92487185 -28770345 + B1_Mur3 SINE Alu 2 147 -2 6 1290 717 283 40 100 chr12 92487185 92487343 -28770187 + B4A SINE B4 142 292 0 6 1290 225 0 0 0 chr12 92487371 92487396 -28770134 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1290 1063 143 107 60 chr12 92487860 92488076 -28769454 - URR1A DNA MER1_type 0 226 1 6 1290 312 91 0 0 chr12 92490796 92490840 -28766690 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1290 351 113 0 0 chr12 92491426 92491479 -28766051 + (CCA)n Simple_repeat Simple_repeat 1 53 0 6 1290 1563 242 22 25 chr12 92491508 92491876 -28765654 + ORR1D1 LTR MaLR 1 367 -7 6 1290 1899 159 111 23 chr12 92491876 92492262 -28765268 + MTC LTR MaLR 1 420 -1 6 1290 689 166 83 57 chr12 92493053 92493245 -28764285 - B3A SINE B2 0 198 2 6 1290 780 114 0 0 chr12 92493395 92493544 -28763986 + (CAGAG)n Simple_repeat Simple_repeat 5 153 0 6 1290 249 143 0 0 chr12 92493576 92493618 -28763912 + PB1D7 SINE Alu 18 59 -61 6 1290 261 180 0 0 chr12 92493648 92493698 -28763832 + GA-rich Low_complexity Low_complexity 2 51 0 6 1290 180 0 0 0 chr12 92494696 92494716 -28762814 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1290 262 145 65 0 chr12 92494782 92494844 -28762686 - Lx9 LINE L1 -7 7637 7572 6 1290 211 279 253 16 chr12 92496813 92496995 -28760535 + MIR SINE MIR 28 252 -10 6 1290 253 308 44 76 chr12 92497106 92497264 -28760266 + MER104 DNA Tc2 1 153 -28 6 1290 1149 75 0 0 chr12 92497483 92497629 -28759901 + B1_Mus2 SINE Alu 2 147 0 6 1290 203 189 0 0 chr12 92499086 92499123 -28758407 + A-rich Low_complexity Low_complexity 1 37 0 6 1290 25 31 0 0 chr12 92499918 92499950 -28757580 + AT_rich Low_complexity Low_complexity 1 32 0 6 1290 1912 79 0 8 chr12 92500028 92500283 -28757247 - L1_Mus1 LINE L1 0 6567 6315 1 1290 349 258 32 21 chr12 92500752 92500847 -28756683 + MLT1A LTR MaLR 261 356 -18 2 1290 203 103 26 0 chr12 92501595 92501634 -28755896 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 1290 1129 74 0 7 chr12 92501634 92501783 -28755747 - B1_Mus1 SINE Alu 0 148 1 4 1290 21 36 0 0 chr12 92503111 92503139 -28754391 + AT_rich Low_complexity Low_complexity 1 28 0 5 1290 393 133 0 0 chr12 92503194 92503269 -28754261 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 6 1290 336 239 0 0 chr12 92503269 92503340 -28754190 - ID4_ SINE ID -11 72 2 7 1290 453 276 224 25 chr12 92503353 92503554 -28753976 - B4A SINE B4 -49 243 3 8 1290 452 251 54 108 chr12 92506603 92506880 -28750650 + Lx7 LINE L1 5916 6177 -1519 9 1290 204 40 0 0 chr12 92506896 92506921 -28750609 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1290 378 143 0 0 chr12 92506939 92507002 -28750528 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1290 530 169 67 30 chr12 92507041 92507175 -28750355 + Lx7 LINE L1 7555 7693 -3 1 1290 443 291 84 62 chr12 92508510 92508875 -28748655 - MER68 LTR ERVL -24 539 140 1 1290 294 307 0 0 chr12 92509409 92509484 -28748046 + ID4_ SINE ID 1 75 -8 1 1290 600 257 7 20 chr12 92509517 92509664 -28747866 + B1F SINE Alu 2 146 -3 1 1290 1137 94 0 0 chr12 92511326 92511757 -28745773 + (TG)n Simple_repeat Simple_repeat 1 431 0 1 1290 541 204 7 7 chr12 92511779 92511932 -28745598 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 1290 240 111 0 0 chr12 92512073 92512109 -28745421 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1 1290 937 222 38 10 chr12 92513738 92513947 -28743583 + B3 SINE B2 2 216 0 1 1290 367 249 142 9 chr12 92514542 92514753 -28742777 + L1M4b LINE L1 1349 1587 -5747 2 1290 255 242 0 29 chr12 92514952 92515020 -28742510 + MTEa LTR MaLR 314 379 0 2 1290 216 0 0 0 chr12 92515150 92515174 -28742356 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1290 405 102 0 0 chr12 92515326 92515385 -28742145 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2 1290 35360 27 5 7 chr12 92516350 92521536 -28735994 + L1Md_A LINE L1 416 5585 -298 2 1290 8385 32 4 0 chr12 92521538 92522530 -28735000 + L1Md_A LINE L1 5587 6582 0 2 1290 957 99 0 0 chr12 92523705 92523857 -28733673 + (TC)n Simple_repeat Simple_repeat 1 152 0 2 1290 342 0 0 0 chr12 92523857 92523894 -28733636 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1290 201 147 0 0 chr12 92523901 92523935 -28733595 + (CAAG)n Simple_repeat Simple_repeat 3 36 0 2 1290 861 140 12 6 chr12 92524209 92524374 -28733156 + Lx2 LINE L1 6832 6997 0 2 1290 270 0 0 0 chr12 92524927 92524957 -28732573 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1290 348 24 0 0 chr12 92524957 92524997 -28732533 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1290 180 111 0 0 chr12 92525329 92525356 -28732174 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1290 504 293 71 24 chr12 92525395 92525602 -28731928 + B4 SINE B4 14 230 -62 3 1290 609 268 55 61 chr12 92525602 92525765 -28731765 + RSINE1 SINE B4 4 165 0 3 1290 396 0 0 0 chr12 92525928 92525972 -28731558 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1290 290 291 88 35 chr12 92526261 92526375 -28731155 + B1F SINE Alu 22 141 -8 3 1290 1990 153 67 6 chr12 92532943 92533299 -28724231 + ORR1C1 LTR MaLR 1 378 0 3 1290 504 204 34 34 chr12 92533331 92533448 -28724082 - PB1D10 SINE Alu 0 117 1 3 1290 25 0 0 0 chr12 92535367 92535392 -28722138 + AT_rich Low_complexity Low_complexity 1 25 0 3 1290 899 317 64 23 chr12 92535850 92536115 -28721415 - B4A SINE B4 -14 278 3 3 161 2020 163 33 73 chr12 92536659 92537057 -28720473 + ORR1C2 LTR MaLR 3 384 0 4 1291 1714 156 116 9 chr12 92537841 92538005 -28719525 - ORR1C2 LTR MaLR -12 372 172 4 1291 189 0 0 0 chr12 92538005 92538026 -28719504 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 4 1291 1714 156 116 9 chr12 92538026 92538197 -28719333 - ORR1C2 LTR MaLR -213 171 1 4 1291 1125 102 0 0 chr12 92538467 92538614 -28718916 + B1_Mus1 SINE Alu 2 148 0 4 1291 371 21 21 0 chr12 92539012 92539060 -28718470 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1291 285 29 0 0 chr12 92540002 92540036 -28717494 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1291 261 0 0 0 chr12 92540036 92540064 -28717466 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1291 188 330 41 71 chr12 92540183 92540281 -28717249 + L2c LINE L2 3277 3371 -16 4 1291 517 295 6 92 chr12 92540393 92540485 -28717045 - B3A SINE B2 0 198 111 4 1291 1878 219 28 137 chr12 92540485 92541055 -28716475 + RLTR18B LTR ERVK 1 508 -4 4 1291 517 295 6 92 chr12 92541055 92541126 -28716404 - B3A SINE B2 -88 110 49 4 1291 753 176 13 60 chr12 92541363 92541514 -28716016 - B1_Mur2 SINE Alu 0 149 6 5 1291 258 286 17 148 chr12 92541411 92541526 -28716004 - MT2B LTR ERVL -344 257 158 5 1291 378 269 146 22 chr12 92541532 92541848 -28715682 - L1MD3 LINE L1 -9 7986 7632 5 1291 1124 43 0 41 chr12 92542906 92543051 -28714479 - B1_Mus1 SINE Alu -9 139 1 5 1291 540 234 0 0 chr12 92545518 92545629 -28711901 + PB1D9 SINE Alu 2 112 -8 5 1291 1188 62 0 0 chr12 92545722 92545867 -28711663 - B1_Mm SINE Alu 0 147 3 5 1291 537 303 79 44 chr12 92546214 92546442 -28711088 + MamSINE1 SINE tRNA 23 258 -32 5 1291 4816 72 62 26 chr12 92547654 92548097 -28709433 - Lx3_Mus LINE L1 -635 6374 5911 5 1291 183 42 0 0 chr12 92548097 92548121 -28709409 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1291 4816 73 55 22 chr12 92548121 92548500 -28709030 - Lx3_Mus LINE L1 -1099 5910 5528 5 1291 4736 57 73 0 chr12 92548501 92549119 -28708411 + Lx3_Mus LINE L1 6347 7009 0 5 1291 420 55 0 0 chr12 92549246 92549301 -28708229 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1291 661 82 102 0 chr12 92549443 92549541 -28707989 + B1_Mus1 SINE Alu 1 108 -40 6 1291 24 0 0 0 chr12 92549953 92549977 -28707553 + AT_rich Low_complexity Low_complexity 1 24 0 6 1291 270 73 0 0 chr12 92550669 92550710 -28706820 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 6 1291 261 175 0 0 chr12 92550851 92550866 -28706664 + A-rich Low_complexity Low_complexity 1 15 0 6 1291 1100 62 13 27 chr12 92550866 92551015 -28706515 + B1_Mus2 SINE Alu 1 147 0 6 1291 261 175 0 0 chr12 92551015 92551056 -28706474 + A-rich Low_complexity Low_complexity 16 56 0 6 1291 197 408 109 0 chr12 92551069 92551253 -28706277 - L2a LINE L2 -234 3192 2989 6 1291 346 304 69 0 chr12 92551299 92551401 -28706129 - RSINE1 SINE B4 -53 112 4 6 1291 186 345 89 18 chr12 92551402 92551514 -28706016 - L2a LINE L2 -423 2996 2877 6 1291 21 0 0 0 chr12 92553410 92553431 -28704099 + AT_rich Low_complexity Low_complexity 1 21 0 6 1291 619 295 75 15 chr12 92553991 92554256 -28703274 + B4A SINE B4 4 284 -8 7 1291 202 219 0 0 chr12 92554284 92554325 -28703205 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1291 439 204 41 81 chr12 92554652 92554775 -28702755 + PB1D9 SINE Alu 1 118 -2 7 1291 22 0 0 0 chr12 92555120 92555142 -28702388 + AT_rich Low_complexity Low_complexity 1 22 0 7 1291 858 157 15 0 chr12 92555175 92555309 -28702221 + B1_Mur4 SINE Alu 2 137 -13 7 1291 22 0 0 0 chr12 92555319 92555341 -28702189 + AT_rich Low_complexity Low_complexity 1 22 0 7 1291 594 41 0 0 chr12 92555341 92555414 -28702116 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1291 320 224 80 85 chr12 92555692 92555868 -28701662 + L1M2 LINE L1 3480 3654 -2489 7 1291 7692 199 106 7 chr12 92555894 92558428 -28699102 - Lx7 LINE L1 -1 7695 4925 7 1291 256 277 62 21 chr12 92558429 92558573 -28698957 + L1M5 LINE L1 3649 3798 -2348 7 1291 230 240 40 0 chr12 92559180 92559230 -28698300 + L1M5 LINE L1 4566 4617 -1529 7 1291 494 183 73 24 chr12 92559738 92559861 -28697669 + ORR1D2 LTR MaLR 242 370 0 8 1291 209 213 0 21 chr12 92561379 92561427 -28696103 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 8 1291 272 315 88 17 chr12 92561506 92561687 -28695843 + L1MC4 LINE L1 7179 7372 -670 8 1291 1437 237 60 52 chr12 92562686 92563087 -28694443 + MTD LTR MaLR 1 404 -15 8 1291 276 233 55 0 chr12 92563788 92563861 -28693669 - ID_B1 SINE B4 -78 146 70 8 1291 839 35 0 17 chr12 92564165 92564304 -28693226 - L1Md_F2 LINE L1 0 6582 6451 8 1291 1715 57 9 5 chr12 92564304 92564515 -28693015 + L1Md_F2 LINE L1 6239 6450 -132 8 1291 487 258 91 57 chr12 92565193 92565456 -28692074 + B4 SINE B4 2 273 -19 8 1291 1306 149 37 0 chr12 92565458 92565673 -28691857 + URR1B DNA MER1_type 1 223 -2 8 1291 224 219 12 0 chr12 92565695 92565777 -28691753 + GA-rich Low_complexity Low_complexity 2 84 0 8 1291 286 271 58 43 chr12 92565810 92565949 -28691581 + L1MB7 LINE L1 6043 6183 -1 8 1291 463 284 34 8 chr12 92565951 92566068 -28691462 + ID_B1 SINE B4 75 194 -30 9 1291 1039 216 172 22 chr12 92566095 92566450 -28691080 + MTD LTR MaLR 12 419 0 9 1291 259 301 176 34 chr12 92568080 92568228 -28689302 + B4A SINE B4 41 209 -83 9 1291 180 0 0 0 chr12 92568662 92568682 -28688848 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1291 225 94 0 0 chr12 92568930 92568962 -28688568 + (CAT)n Simple_repeat Simple_repeat 2 33 0 9 1291 324 0 0 0 chr12 92568969 92569005 -28688525 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1291 422 276 82 0 chr12 92569012 92569146 -28688384 - RSINE1 SINE B4 -19 146 2 9 1291 508 163 0 44 chr12 92569376 92569423 -28688107 + polypurine Low_complexity Low_complexity 2 48 0 9 1291 1317 61 0 0 chr12 92569423 92569603 -28687927 + (GGA)n Simple_repeat Simple_repeat 1 180 0 9 1291 508 163 0 44 chr12 92569603 92569627 -28687903 + polypurine Low_complexity Low_complexity 49 72 0 9 1291 1323 62 0 0 chr12 92569627 92570146 -28687384 + (GGA)n Simple_repeat Simple_repeat 1 519 0 1 1291 508 163 0 44 chr12 92570146 92570204 -28687326 + polypurine Low_complexity Low_complexity 73 129 0 1 1291 256 298 92 25 chr12 92570280 92570476 -28687054 + Charlie11 DNA MER1_type 1309 1517 -679 1 1291 23 0 0 0 chr12 92570555 92570578 -28686952 + AT_rich Low_complexity Low_complexity 1 23 0 1 1291 246 170 18 54 chr12 92570599 92570655 -28686875 - B1F SINE Alu -1 148 95 1 1291 461 308 92 44 chr12 92570744 92571104 -28686426 - MTEb LTR MaLR 0 379 3 1 1291 249 345 71 14 chr12 92571515 92571656 -28685874 - B1F SINE Alu 0 149 1 1 1291 418 165 25 0 chr12 92571837 92571916 -28685614 - BC1_Mm scRNA scRNA -70 82 2 1 1291 358 217 98 0 chr12 92571960 92572052 -28685478 - MER5A DNA MER1_type -40 149 49 1 1291 210 71 0 0 chr12 92572057 92572085 -28685445 + (CTGGGG)n Simple_repeat Simple_repeat 5 32 0 1 1291 21 0 0 0 chr12 92573017 92573038 -28684492 + AT_rich Low_complexity Low_complexity 1 21 0 1 1291 281 296 164 30 chr12 92574416 92574684 -28682846 + L2 LINE L2 2395 2698 -721 1 1291 797 211 14 0 chr12 92574823 92574970 -28682560 + B1_Mur2 SINE Alu 1 149 0 1 1291 354 98 0 0 chr12 92574971 92575022 -28682508 + (GGA)n Simple_repeat Simple_repeat 2 52 0 1 1291 245 137 39 0 chr12 92575014 92575065 -28682465 + GA-rich Low_complexity Low_complexity 4 56 0 1 1291 228 239 14 40 chr12 92575610 92575684 -28681846 + MIR SINE MIR 1 72 -190 1 1291 950 153 11 0 chr12 92575751 92575927 -28681603 + GA-rich Low_complexity Low_complexity 1 178 0 1 1291 555 301 20 65 chr12 92576465 92576706 -28680824 + B4A SINE B4 1 230 -62 1 1291 525 212 216 10 chr12 92576706 92576885 -28680645 + B3A SINE B2 2 203 -13 1 1291 1015 80 0 0 chr12 92577039 92577177 -28680353 + B1_Mus2 SINE Alu 2 139 -8 1 1291 1043 229 5 23 chr12 92578290 92578509 -28679021 + B3 SINE B2 2 216 0 1 1291 25 0 0 0 chr12 92578682 92578707 -28678823 + AT_rich Low_complexity Low_complexity 1 25 0 1 1291 339 230 40 0 chr12 92579998 92580098 -28677432 + RLTR40 LTR ERVK 1 104 -713 1 1291 680 269 146 2 chr12 92580184 92580430 -28677100 - MTC LTR MaLR -131 269 1 1 1291 272 158 42 90 chr12 92580430 92580502 -28677028 + RLTR40 LTR ERVK 120 171 -646 1 1291 480 18 0 0 chr12 92580502 92580559 -28676971 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1291 245 144 77 135 chr12 92580559 92580623 -28676907 + RLTR40 LTR ERVK 298 367 -450 1 1291 3838 91 100 25 chr12 92580624 92581399 -28676131 + RLTR13D4 LTR ERVK 1 1033 0 1 1291 420 183 70 70 chr12 92581399 92581528 -28676002 + RLTR40 LTR ERVK 363 491 -326 1 1291 741 148 74 0 chr12 92581534 92581656 -28675874 + B1_Mur4 SINE Alu 6 136 -14 1 1291 774 246 97 37 chr12 92581687 92581987 -28675543 + RLTR40 LTR ERVK 487 804 -13 1 1291 2191 135 62 3 chr12 92582115 92582501 -28675029 + MTC LTR MaLR 11 419 -2 1 1291 2874 302 95 56 chr12 92582520 92583767 -28673763 - Lx8 LINE L1 -1 7472 6195 1 1291 375 23 0 0 chr12 92583767 92583811 -28673719 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1291 2874 302 95 56 chr12 92583811 92583848 -28673682 - Lx8 LINE L1 -1279 6194 6146 1 1291 1389 87 11 0 chr12 92583848 92584033 -28673497 - B2_Mm1a SINE B2 -6 187 1 1 1291 2874 302 95 56 chr12 92584033 92584183 -28673347 - Lx8 LINE L1 -1328 6145 5982 1 1291 3549 162 49 18 chr12 92584583 92585543 -28671987 + L1_Mur3 LINE L1 892 1880 -3997 1 1291 433 208 19 47 chr12 92585730 92585836 -28671694 + Lx7 LINE L1 5826 5928 -1768 1 1291 387 0 0 0 chr12 92586956 92586999 -28670531 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 1 1291 1933 237 137 87 chr12 92587890 92588871 -28668659 + RMER12 LTR ERVK 1 1338 -234 1 1291 306 0 0 0 chr12 92588888 92588922 -28668608 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1291 248 259 44 11 chr12 92588925 92589015 -28668515 + RMER12B LTR ERVK 1106 1198 -124 1 1291 251 241 86 0 chr12 92589168 92589226 -28668304 + RMER12B LTR ERVK 1342 1404 0 1 1291 292 257 124 0 chr12 92590075 92590180 -28667350 - PB1D7 SINE Alu 0 120 3 1 1291 229 289 117 63 chr12 92590400 92590511 -28667019 - L1MEg LINE L1 -5581 503 387 1 1291 234 225 25 32 chr12 92590881 92591037 -28666493 + (CAGA)n Simple_repeat Simple_repeat 1 155 0 1 1291 458 289 33 13 chr12 92591646 92591797 -28665733 - RSINE1 SINE B4 -4 161 8 1 1291 1761 235 59 33 chr12 92592111 92592586 -28664944 + RLTR20A2 LTR ERVK 1 479 -99 1 1291 390 42 0 0 chr12 92592586 92592634 -28664896 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1291 1761 235 59 33 chr12 92592634 92592669 -28664861 + RLTR20A2 LTR ERVK 480 523 -55 1 1291 678 179 57 0 chr12 92592675 92592824 -28664706 - Lx2B LINE L1 -422 6586 6407 1 1291 530 252 40 8 chr12 92593377 92593536 -28663994 + B3A SINE B2 13 182 -13 1 1291 383 284 52 121 chr12 92593900 92594148 -28663382 + L1MA4A LINE L1 5666 5896 -407 1 1291 1067 195 28 5 chr12 92595089 92595300 -28662230 - B3 SINE B2 0 216 1 1 1291 25 0 0 0 chr12 92595300 92595325 -28662205 + AT_rich Low_complexity Low_complexity 1 25 0 1 1291 886 280 31 41 chr12 92595339 92595633 -28661897 + B4 SINE B4 2 292 0 1 1291 288 0 0 0 chr12 92595777 92595809 -28661721 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1291 233 227 0 0 chr12 92595876 92595920 -28661610 + GA-rich Low_complexity Low_complexity 1 44 0 1 1291 14430 178 92 18 chr12 92596705 92598805 -28658725 + Lx LINE L1 2601 4937 -943 1 1291 4181 153 29 63 chr12 92598805 92599571 -28657959 - Lx LINE L1 -10 6644 5905 1 1291 14430 123 43 10 chr12 92599571 92601283 -28656247 + Lx LINE L1 4938 6654 0 1 1291 326 100 17 0 chr12 92601480 92601540 -28655990 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1 1291 1164 186 5 5 chr12 92601593 92601809 -28655721 - URR1B DNA MER1_type -3 222 7 1 1291 732 254 36 140 chr12 92601788 92602117 -28655413 - MTE2a LTR MaLR -71 308 14 1 1291 673 228 22 3 chr12 92602330 92602499 -28655031 + B3 SINE B2 2 183 -10 1 1291 389 171 14 0 chr12 92602556 92602626 -28654904 - B3 SINE B2 -145 71 1 1 1291 222 105 0 0 chr12 92603328 92603366 -28654164 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 1 1291 240 296 80 15 chr12 92604251 92604388 -28653142 + MLT1E2 LTR MaLR 44 189 -316 1 1291 317 267 11 0 chr12 92604623 92604713 -28652817 + MLT1E2 LTR MaLR 532 622 -5 1 1291 349 283 50 94 chr12 92605353 92605513 -28652017 + B4A SINE B4 140 292 0 1 1291 393 314 57 103 chr12 92606615 92607002 -28650528 + MTEa LTR MaLR 3 371 -8 1 1291 202 128 0 60 chr12 92607258 92607308 -28650222 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1291 21 0 0 0 chr12 92608172 92608193 -28649337 + AT_rich Low_complexity Low_complexity 1 21 0 1 1291 832 226 32 0 chr12 92609074 92609264 -28648266 + Lx9 LINE L1 7265 7460 -184 1 1291 576 42 0 0 chr12 92609267 92609338 -28648192 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1291 23 33 0 0 chr12 92609561 92609591 -28647939 + AT_rich Low_complexity Low_complexity 1 30 0 1 1291 3336 259 84 73 chr12 92610989 92611074 -28646456 + Lx5 LINE L1 5706 5785 -1265 1 1291 198 0 0 0 chr12 92611074 92611096 -28646434 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1291 3336 259 84 73 chr12 92611096 92611497 -28646033 + Lx5 LINE L1 5786 6230 -820 1 1291 396 0 0 0 chr12 92611497 92611541 -28645989 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1291 3336 259 84 73 chr12 92611541 92612365 -28645165 + Lx5 LINE L1 6231 7029 -21 1 1291 1732 5 0 0 chr12 92612532 92612729 -28644801 + L1Md_T LINE L1 6386 6582 0 1 1291 328 298 19 9 chr12 92613915 92614020 -28643510 + PB1D10 SINE Alu 3 108 -9 1 1291 235 250 27 14 chr12 92614026 92614099 -28643431 + ID4 SINE ID 2 75 -8 1 1291 231 179 70 18 chr12 92614301 92614358 -28643172 + Charlie15a DNA MER1_type 103 162 -62 1 1291 212 211 0 0 chr12 92614401 92614439 -28643091 + B3A SINE B2 3 40 -158 1 1291 196 327 9 55 chr12 92616382 92616492 -28641038 + L2c LINE L2 3100 3204 -183 1 1291 948 105 291 0 chr12 92616680 92616852 -28640678 - URR1A DNA MER1_type 0 226 5 1 1291 464 250 161 0 chr12 92618487 92618611 -28638919 + RSINE1 SINE B4 5 148 -17 1 1291 230 265 164 19 chr12 92618670 92618774 -28638756 + L1M5 LINE L1 5560 5678 -446 1 1291 399 212 40 0 chr12 92618953 92619052 -28638478 + PB1D10 SINE Alu 3 105 -12 1 1291 3081 68 2 8 chr12 92620299 92620697 -28636833 + MTA_Mm LTR MaLR 1 396 0 1 1291 1200 192 0 13 chr12 92621334 92621561 -28635969 - URR1B DNA MER1_type -1 224 1 1 1291 505 273 7 7 chr12 92621742 92621882 -28635648 + B1F1 SINE Alu 9 148 -1 1 1291 200 97 0 31 chr12 92621883 92621915 -28635615 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1291 300 273 71 18 chr12 92621979 92622091 -28635439 + Charlie5 DNA MER1_type 2500 2617 -7 1 1291 211 256 0 0 chr12 92622116 92622159 -28635371 - MIRb SINE MIR -22 246 204 1 1291 333 0 0 0 chr12 92623529 92623566 -28633964 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1291 337 215 54 45 chr12 92623720 92623832 -28633698 + URR1B DNA MER1_type 113 225 0 1 1291 294 226 0 0 chr12 92624952 92625014 -28632516 - MLT1B LTR MaLR -4 386 325 1 1291 183 100 0 0 chr12 92625019 92625049 -28632481 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1291 288 0 0 0 chr12 92625186 92625218 -28632312 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1291 234 218 86 37 chr12 92625218 92625299 -28632231 - MLT1B LTR MaLR -229 161 77 1 1291 1232 112 137 0 chr12 92625944 92626141 -28631389 + URR1A DNA MER1_type 1 224 -2 1 1291 369 0 0 0 chr12 92626436 92626477 -28631053 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1291 6546 83 17 7 chr12 92626479 92627354 -28630176 - Lx LINE L1 -25 6629 5746 1 1291 2202 125 12 0 chr12 92627354 92627698 -28629832 - ORR1B2 LTR MaLR -19 348 1 1 1291 289 274 14 0 chr12 92627976 92628049 -28629481 - MER45A DNA Tip100 0 178 105 1 1291 334 278 65 71 chr12 92628058 92628213 -28629317 + RSINE1 SINE B4 12 165 0 1 1291 198 0 0 0 chr12 92628244 92628266 -28629264 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1291 368 271 55 47 chr12 92628274 92628402 -28629128 - MER45R DNA Tip100 -1451 130 2 1 1291 342 0 0 0 chr12 92628458 92628496 -28629034 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1291 702 307 117 56 chr12 92629729 92629913 -28627617 + L1MEc LINE L1 142 339 -6061 2 1291 198 71 0 0 chr12 92629913 92629941 -28627589 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1291 702 307 117 56 chr12 92629941 92630314 -28627216 + L1MEc LINE L1 340 733 -5667 2 1291 813 265 127 119 chr12 92630315 92630922 -28626608 + RLTR18B LTR ERVK 5 616 0 2 1291 362 66 33 0 chr12 92631483 92631544 -28625986 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 2 1291 910 246 96 33 chr12 92631867 92632170 -28625360 - RLTR23 LTR ERV1 0 430 109 2 1291 1121 296 87 54 chr12 92632469 92633632 -28623898 - MuRRS4-int LTR ERV1 -3255 4523 2763 2 1291 1433 98 0 5 chr12 92633774 92633968 -28623562 + B2_Mm2 SINE B2 2 194 -1 2 1291 548 274 68 14 chr12 92634529 92634736 -28622794 - MuRRS-int LTR ERV1 -2657 2033 1816 2 1291 448 312 51 71 chr12 92634924 92635125 -28622405 + RLTR4_MM-int LTR ERV1 1253 1454 -6147 2 1291 2116 168 59 92 chr12 92635125 92635279 -28622251 - RLTR31_Mm LTR ERVK 0 561 408 2 1291 1190 41 7 20 chr12 92635279 92635427 -28622103 + B1_Mm SINE Alu 2 147 0 2 1291 2116 168 59 92 chr12 92635427 92635848 -28621682 - RLTR31_Mm LTR ERVK -154 407 5 2 1291 448 332 47 65 chr12 92635848 92636083 -28621447 + RLTR4_MM-int LTR ERV1 1455 1735 -5821 2 1291 1500 205 73 17 chr12 92636255 92636612 -28620918 + MTE2b LTR MaLR 2 378 -1 2 1291 1037 261 35 57 chr12 92636612 92636929 -28620601 + Lx9 LINE L1 6972 7281 -363 2 1291 521 198 0 8 chr12 92637034 92637049 -28620481 + polypurine Low_complexity Low_complexity 3 17 0 2 1291 1186 55 7 0 chr12 92637049 92637194 -28620336 + B1_Mm SINE Alu 2 147 0 2 1291 521 198 0 8 chr12 92637194 92637300 -28620230 + GA-rich Low_complexity Low_complexity 18 123 0 2 1291 280 316 92 37 chr12 92637566 92637839 -28619691 + L1M5 LINE L1 3584 3871 -2275 2 1291 615 249 108 0 chr12 92637948 92638133 -28619397 - ID_B1 SINE B4 -18 206 2 2 1291 245 224 49 62 chr12 92638291 92638372 -28619158 - L1M5 LINE L1 -390 5774 5695 2 1291 561 242 23 0 chr12 92640116 92640244 -28617286 + B1_Mur2 SINE Alu 6 136 -13 2 1291 225 0 0 0 chr12 92640253 92640278 -28617252 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1291 698 252 65 40 chr12 92640463 92640711 -28616819 - Lx8 LINE L1 -201 7272 7019 2 1291 725 218 7 14 chr12 92641175 92641319 -28616211 + RSINE1 SINE B4 4 146 -19 2 1291 348 145 130 0 chr12 92642213 92642287 -28615243 + B3 SINE B2 18 101 -97 2 1291 2161 126 26 164 chr12 92642296 92642687 -28614843 + ORR1B1 LTR MaLR 1 346 -48 2 1291 1207 48 7 0 chr12 92642687 92642832 -28614698 + B1_Mus1 SINE Alu 2 147 -1 2 1291 2161 126 26 164 chr12 92642832 92642897 -28614633 + ORR1B1 LTR MaLR 347 394 0 2 1291 517 180 0 29 chr12 92644577 92644680 -28612850 - B1_Mur4 SINE Alu -1 149 50 2 1291 230 207 0 17 chr12 92644739 92644798 -28612732 + CT-rich Low_complexity Low_complexity 3 60 0 2 1291 362 335 47 67 chr12 92645015 92645268 -28612262 - MLT1A0 LTR MaLR -112 253 6 2 1291 223 290 64 11 chr12 92645823 92645917 -28611613 - L2 LINE L2 -757 2662 2564 2 1291 456 39 25 38 chr12 92646340 92646420 -28611110 + (GTTTG)n Simple_repeat Simple_repeat 1 79 0 2 1291 523 191 217 0 chr12 92646420 92646535 -28610995 - B1_Mur4 SINE Alu -9 141 2 2 1291 640 276 70 60 chr12 92646563 92646848 -28610682 - B4A SINE B4 -4 288 1 2 1291 352 61 0 0 chr12 92647193 92647242 -28610288 + ORR1A4 LTR MaLR 14 62 -267 2 1291 489 138 0 0 chr12 92647232 92647312 -28610218 + ORR1A4 LTR MaLR 181 260 -69 2 1291 583 129 17 0 chr12 92647299 92647415 -28610115 - ORR1A4-int LTR MaLR -1845 118 1 2 1291 1889 110 97 3 chr12 92647415 92647715 -28609815 - ORR1A4 LTR MaLR 0 329 2 2 1291 976 237 145 60 chr12 92647782 92647976 -28609554 - RMER4B LTR ERVK -137 448 225 2 1291 432 0 0 0 chr12 92647976 92648024 -28609506 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1291 976 237 145 60 chr12 92648024 92648242 -28609288 - RMER4B LTR ERVK -361 224 1 2 1291 190 136 45 0 chr12 92648249 92648293 -28609237 + CT-rich Low_complexity Low_complexity 2 47 0 2 1291 731 259 25 37 chr12 92648362 92648603 -28608927 - L1MB5 LINE L1 -65 6109 5872 2 1291 195 100 0 0 chr12 92649062 92649092 -28608438 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1291 912 122 102 27 chr12 92649093 92649279 -28608251 - Lx LINE L1 0 6654 6455 2 1291 813 248 69 5 chr12 92649414 92649617 -28607913 - B3 SINE B2 0 216 1 2 1291 505 268 34 27 chr12 92649689 92649835 -28607695 - B1_Mur1 SINE Alu 0 149 3 2 1291 423 0 0 0 chr12 92649865 92649912 -28607618 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1291 334 326 71 110 chr12 92650084 92650394 -28607136 + ORR1E LTR MaLR 8 305 -54 2 1291 324 263 34 74 chr12 92650431 92650514 -28607016 + ORR1E LTR MaLR 50 128 -231 2 1291 1067 108 208 36 chr12 92650514 92650706 -28606824 - URR1A DNA MER1_type 0 226 2 2 1291 324 263 34 74 chr12 92650706 92650770 -28606760 + ORR1E LTR MaLR 129 191 -168 2 1291 1413 11 11 6 chr12 92652632 92652808 -28604722 + (GAA)n Simple_repeat Simple_repeat 3 179 0 2 1291 527 139 10 0 chr12 92652808 92652909 -28604621 + (GA)n Simple_repeat Simple_repeat 1 102 0 2 1291 940 163 124 5 chr12 92652987 92653172 -28604358 + B3 SINE B2 2 208 -8 2 1291 978 113 0 0 chr12 92653175 92653326 -28604204 + (GGAA)n Simple_repeat Simple_repeat 4 154 0 2 1291 219 295 65 28 chr12 92654838 92654946 -28602584 + L2 LINE L2 1921 2032 -1387 2 1291 246 62 0 0 chr12 92655307 92655339 -28602191 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1291 234 250 0 16 chr12 92656430 92656491 -28601039 + B3 SINE B2 35 94 -122 2 1291 341 260 0 50 chr12 92656548 92656649 -28600881 + B3A SINE B2 87 182 -16 2 1291 260 258 15 0 chr12 92656687 92656753 -28600777 - MER47A DNA MER2_type -271 95 29 2 1291 226 47 22 44 chr12 92657157 92657202 -28600328 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1291 342 0 0 0 chr12 92657684 92657722 -28599808 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1291 297 89 0 0 chr12 92657739 92657784 -28599746 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 2 1291 462 138 0 0 chr12 92657825 92657905 -28599625 + B2_Mm2 SINE B2 5 84 -111 2 1291 450 314 44 0 chr12 92658091 92658228 -28599302 + B3A SINE B2 1 143 -55 2 1291 791 230 78 24 chr12 92658605 92658810 -28598720 + B3 SINE B2 1 216 0 2 1291 1257 164 47 0 chr12 92659010 92659223 -28598307 - URR1B DNA MER1_type -1 224 2 2 1291 423 52 0 0 chr12 92659236 92659294 -28598236 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2 1291 848 258 83 42 chr12 92660242 92660526 -28597004 - RMER5 LTR ERV1 -104 430 136 2 1291 1265 265 33 25 chr12 92660526 92660893 -28596637 + ORR1D2 LTR MaLR 1 370 0 2 1291 848 258 83 42 chr12 92660893 92660992 -28596538 - RMER5 LTR ERV1 -399 135 31 2 1291 1357 179 121 15 chr12 92661855 92662185 -28595345 - RLTR30 LTR ERV1 -12 367 3 2 1291 243 125 0 0 chr12 92662521 92662561 -28594969 + (CCCCCT)n Simple_repeat Simple_repeat 3 42 0 2 1291 601 208 6 6 chr12 92662621 92662800 -28594730 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1291 271 250 79 10 chr12 92662817 92662918 -28594612 - MIRb SINE MIR -77 191 84 2 1291 704 261 103 0 chr12 92663116 92663300 -28594230 + B3 SINE B2 1 203 -13 2 1291 287 78 0 19 chr12 92663512 92663564 -28593966 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 1291 8179 47 6 0 chr12 92663586 92664565 -28592965 + L1_Mus1 LINE L1 5587 7000 0 2 1291 865 123 0 15 chr12 92665418 92665550 -28591980 + B3 SINE B2 1 130 -86 2 1291 324 0 0 0 chr12 92665558 92665594 -28591936 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 2 1291 181 263 233 17 chr12 92666557 92666677 -28590853 - L3 LINE CR1 -12 4477 4332 2 1291 624 62 0 0 chr12 92666717 92666798 -28590732 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 2 1291 633 255 77 94 chr12 92666839 92667125 -28590405 - B4 SINE B4 -11 281 1 2 1292 496 344 6 58 chr12 92668068 92668241 -28589289 + RSINE1 SINE B4 2 165 0 2 1292 22 35 0 0 chr12 92668250 92668279 -28589251 + AT_rich Low_complexity Low_complexity 1 29 0 2 1292 353 58 0 19 chr12 92668367 92668420 -28589110 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1292 607 168 113 40 chr12 92668421 92668545 -28588985 - B1_Mur1 SINE Alu -3 146 14 2 1292 444 269 28 2 chr12 92668712 92668924 -28588606 - L1MA5A LINE L1 -382 5918 5657 2 1292 324 0 0 0 chr12 92668969 92669005 -28588525 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2 1292 977 283 107 77 chr12 92669027 92669151 -28588379 - L1MA5A LINE L1 -2407 3736 3617 2 1292 711 0 0 0 chr12 92669151 92669230 -28588300 + (TTTCC)n Simple_repeat Simple_repeat 1 79 0 2 1292 977 283 107 77 chr12 92669230 92669952 -28587578 - L1MA5A LINE L1 -2527 3616 2866 2 1292 362 333 46 56 chr12 92670127 92670343 -28587187 - RMER12 LTR ERVK -8 1314 1101 2 1292 436 157 67 0 chr12 92670599 92670688 -28586842 - RLTR22_Mur LTR ERVK -1017 831 737 2 1292 1334 113 11 0 chr12 92670688 92670865 -28586665 + B2_Mm1t SINE B2 1 179 -14 2 1292 393 108 385 19 chr12 92670878 92670982 -28586548 + B2_Mm2 SINE B2 47 188 -7 2 1292 5276 74 8 8 chr12 92670977 92671727 -28585803 - RLTR22_Mur LTR ERVK -1098 750 1 2 1292 263 336 31 8 chr12 92672243 92672372 -28585158 + L2 LINE L2 2347 2478 -941 2 1292 742 312 85 26 chr12 92672771 92672831 -28584699 - L1_Mur3 LINE L1 -260 5620 5562 2 1292 207 0 0 0 chr12 92672831 92672854 -28584676 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1292 742 312 85 26 chr12 92672854 92673253 -28584277 - L1_Mur3 LINE L1 -319 5561 5135 2 1292 407 48 0 100 chr12 92673343 92673413 -28584117 - MusHAL1 LINE L1 -632 2080 2018 2 1292 939 147 0 0 chr12 92673417 92673553 -28583977 - L1VL2 LINE L1 -5921 414 279 2 1292 3551 64 5 2 chr12 92674002 92674440 -28583090 + L1_Mus3 LINE L1 6200 6638 0 2 1292 905 272 158 32 chr12 92674541 92675008 -28582522 - Lx8 LINE L1 -2 7471 6946 2 1292 261 286 136 14 chr12 92675089 92675218 -28582312 - MIRc SINE MIR -28 240 105 2 1292 241 286 11 21 chr12 92675302 92675395 -28582135 - L1MC3 LINE L1 0 7785 7694 2 1292 533 264 7 44 chr12 92675405 92675540 -28581990 - MLT1B LTR MaLR -24 366 237 2 1292 280 303 62 21 chr12 92675544 92675689 -28581841 - L1MC3 LINE L1 -114 7671 7521 2 1292 534 281 35 9 chr12 92675816 92675931 -28581599 + B3A SINE B2 55 172 -26 2 1292 606 357 35 60 chr12 92675940 92676259 -28581271 + MLT1A LTR MaLR 59 369 -5 3 1292 769 294 42 57 chr12 92676261 92676614 -28580916 - L1MC3 LINE L1 -281 7504 7157 2 1292 7902 63 0 1 chr12 92677528 92678515 -28579015 + L1Md_F2 LINE L1 4601 5586 -297 3 1292 8693 44 4 0 chr12 92678515 92679506 -28578024 + L1Md_F2 LINE L1 5587 6581 -1 3 1292 2458 205 67 78 chr12 92679596 92680176 -28577354 + Lx9 LINE L1 6954 7517 -127 3 1292 297 0 0 0 chr12 92680176 92680209 -28577321 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1292 2458 205 67 78 chr12 92680209 92680325 -28577205 + Lx9 LINE L1 7518 7643 -1 3 1292 238 70 0 109 chr12 92681147 92681211 -28576319 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 3 1292 2430 260 92 33 chr12 92682564 92683712 -28573818 - L1MA8 LINE L1 -10 6281 5061 3 1292 39302 6 0 0 chr12 92683716 92689303 -28568227 + L1Md_F2 LINE L1 1 5586 -297 3 1292 8693 44 4 0 chr12 92689303 92690294 -28567236 + L1Md_F2 LINE L1 5587 6581 -1 3 1292 2458 205 67 78 chr12 92690384 92690964 -28566566 + Lx9 LINE L1 6954 7517 -127 3 1292 297 0 0 0 chr12 92690964 92690997 -28566533 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1292 2458 205 67 78 chr12 92690997 92691113 -28566417 + Lx9 LINE L1 7518 7643 -1 3 1292 238 70 0 109 chr12 92691936 92692000 -28565530 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 3 1292 2430 260 92 33 chr12 92693353 92694501 -28563029 - L1MA8 LINE L1 -10 6281 5061 3 1292 39451 4 0 1 chr12 92694505 92700093 -28557437 + L1Md_A LINE L1 1 5586 -297 3 1292 9619 3 0 0 chr12 92700093 92701089 -28556441 + L1Md_A LINE L1 5587 6582 0 3 1292 260 253 48 12 chr12 92701160 92701244 -28556286 - L1MA8 LINE L1 -1143 4997 4911 3 1292 763 230 102 5 chr12 92701618 92701815 -28555715 - B3 SINE B2 0 216 1 3 1292 570 256 106 72 chr12 92701905 92702170 -28555360 + B4 SINE B4 3 276 -16 3 1292 246 323 31 0 chr12 92702275 92702340 -28555190 + BC1_Mm scRNA scRNA 14 80 -72 3 1292 216 122 0 0 chr12 92702342 92702383 -28555147 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 3 1292 351 44 0 0 chr12 92702815 92702860 -28554670 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1292 21 0 0 0 chr12 92703745 92703766 -28553764 + AT_rich Low_complexity Low_complexity 1 21 0 3 1292 340 331 81 59 chr12 92703768 92703954 -28553576 + Charlie4a DNA MER1_type 45 234 -274 3 1292 201 132 0 50 chr12 92703983 92704023 -28553507 + T-rich Low_complexity Low_complexity 5 42 0 3 1292 225 340 27 27 chr12 92704313 92704425 -28553105 + MIR SINE MIR 94 205 -57 3 1292 210 105 0 0 chr12 92705146 92705184 -28552346 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1292 403 281 11 0 chr12 92705216 92705305 -28552225 + B3 SINE B2 41 130 -86 3 1292 1282 140 22 5 chr12 92705366 92705588 -28551942 + Lx LINE L1 6421 6646 -8 3 1292 297 0 0 0 chr12 92705589 92705622 -28551908 + (TAA)n Simple_repeat Simple_repeat 1 33 0 3 1292 38810 32 2 1 chr12 92705863 92713406 -28544124 - L1Md_T LINE L1 0 6585 1 3 1292 4100 29 0 8 chr12 92713419 92713903 -28543627 - L1Md_T LINE L1 -458 6124 5645 3 1292 4118 44 11 2 chr12 92713903 92714378 -28543152 + L1Md_T LINE L1 6104 6582 0 3 1292 195 100 0 0 chr12 92715264 92715294 -28542236 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 3 1292 699 355 108 14 chr12 92715882 92716327 -28541203 - MLT1H1 LTR MaLR -7 548 62 3 1292 342 0 0 0 chr12 92716540 92716578 -28540952 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1292 525 294 62 84 chr12 92716934 92717254 -28540276 + Lx8 LINE L1 7129 7441 -32 3 1292 834 64 0 0 chr12 92717317 92717426 -28540104 + (CTTTG)n Simple_repeat Simple_repeat 1 109 0 3 1292 676 131 31 39 chr12 92717427 92717554 -28539976 - B1_Mus2 SINE Alu -13 134 9 3 1292 328 343 78 46 chr12 92717555 92717772 -28539758 + L1MEf LINE L1 1255 1478 -4922 3 1292 381 288 65 41 chr12 92717851 92718021 -28539509 + L1MEf LINE L1 1629 1836 -4579 3 1292 907 142 59 59 chr12 92718282 92718469 -28539061 - B2_Mm2 SINE B2 -8 187 1 3 1292 239 279 20 68 chr12 92718552 92718698 -28538832 + RMER17D2 LTR ERVK 399 537 -272 3 1292 255 313 0 43 chr12 92718918 92718988 -28538542 - ID2 SINE ID -14 69 3 3 1292 470 256 86 23 chr12 92718993 92719121 -28538409 - ID_B1 SINE B4 -3 221 86 3 1292 313 200 133 0 chr12 92719384 92719506 -28538024 - Lx7 LINE L1 -15 7681 7562 3 1292 228 67 0 0 chr12 92719509 92719539 -28537991 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1292 2367 260 160 34 chr12 92719582 92720343 -28537187 - Lx7 LINE L1 -410 7286 6430 3 1292 1909 44 0 0 chr12 92721773 92721999 -28535531 - L1Md_F2 LINE L1 -403 6179 5954 3 1292 2450 90 0 0 chr12 92721997 92722319 -28535211 + L1_Mus1 LINE L1 6169 6490 -77 3 1292 322 287 80 44 chr12 92722708 92722753 -28534777 - PB1D7 SINE Alu 0 120 78 3 1292 2861 119 43 39 chr12 92722753 92723270 -28534260 - MURVY-LTR LTR ERV1 0 519 1 3 1292 322 287 80 44 chr12 92723270 92723337 -28534193 - PB1D7 SINE Alu -43 77 4 3 1292 1577 206 37 60 chr12 92723783 92724166 -28533364 + ORR1D1 LTR MaLR 1 374 0 3 1292 180 111 0 0 chr12 92724705 92724732 -28532798 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 1292 204 97 0 0 chr12 92725363 92725394 -28532136 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1292 369 228 51 0 chr12 92725528 92725607 -28531923 + B4 SINE B4 4 86 -206 3 1292 249 108 0 0 chr12 92725609 92725646 -28531884 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1292 1082 59 0 0 chr12 92725649 92725784 -28531746 + B1_Mus2 SINE Alu 1 135 -12 3 1292 496 213 11 0 chr12 92725817 92725911 -28531619 + B4 SINE B4 117 211 -81 3 1292 374 0 22 0 chr12 92725921 92725967 -28531563 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1292 534 31 0 0 chr12 92725967 92726030 -28531500 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1292 1212 202 163 12 chr12 92726488 92726676 -28530854 - ORR1D1 LTR MaLR 0 374 139 3 1292 342 45 0 0 chr12 92726676 92726720 -28530810 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1292 1212 202 163 12 chr12 92726720 92726856 -28530674 - ORR1D1 LTR MaLR -236 138 1 3 1292 252 0 0 0 chr12 92727230 92727258 -28530272 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1292 270 0 0 0 chr12 92728529 92728559 -28528971 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 3 1292 207 0 0 0 chr12 92728624 92728647 -28528883 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1292 1625 24 9 28 chr12 92729501 92729713 -28527817 - L1Md_F3 LINE L1 -2 6582 6375 3 1292 956 190 40 15 chr12 92729766 92729964 -28527566 + B3 SINE B2 1 203 -13 3 1292 22 35 0 0 chr12 92730013 92730042 -28527488 + AT_rich Low_complexity Low_complexity 1 29 0 3 1292 24 85 0 0 chr12 92730101 92730160 -28527370 + AT_rich Low_complexity Low_complexity 1 59 0 3 1292 324 305 28 9 chr12 92730169 92730275 -28527255 - PB1D10 SINE Alu -8 109 2 3 1292 24 0 0 0 chr12 92730370 92730394 -28527136 + AT_rich Low_complexity Low_complexity 1 24 0 3 1292 204 125 0 0 chr12 92730987 92731019 -28526511 + (GGA)n Simple_repeat Simple_repeat 2 33 0 3 1292 1905 211 57 100 chr12 92732331 92732541 -28524989 - RLTR40 LTR ERVK -7 810 602 3 1292 195 42 0 0 chr12 92732541 92732565 -28524965 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 3 1292 1905 211 57 100 chr12 92732565 92732584 -28524946 - RLTR40 LTR ERVK -216 601 601 3 1292 192 40 0 0 chr12 92732584 92732609 -28524921 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1292 1905 211 57 100 chr12 92732609 92732978 -28524552 - RLTR40 LTR ERVK -216 601 237 3 1292 929 206 48 64 chr12 92733822 92734071 -28523459 - RLTR40 LTR ERVK -7 810 566 3 1292 205 349 0 45 chr12 92734071 92734248 -28523282 + C-rich Low_complexity Low_complexity 3 171 0 3 1292 333 0 0 0 chr12 92734248 92734285 -28523245 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1292 2314 166 114 9 chr12 92734293 92734817 -28522713 - RLTR40 LTR ERVK -237 580 2 3 1292 780 278 15 5 chr12 92735384 92735590 -28521940 + B4 SINE B4 84 291 -1 3 1292 621 259 82 39 chr12 92735625 92735895 -28521635 + L1MA9 LINE L1 5607 5936 -376 3 1292 414 294 105 0 chr12 92736311 92736454 -28521076 - RSINE1 SINE B4 -6 159 2 3 1292 226 286 102 0 chr12 92736567 92736665 -28520865 + L1MEg LINE L1 1532 1639 -4445 3 1292 444 293 81 25 chr12 92736760 92737043 -28520487 - Tigger6a DNA MER2_type -66 1017 719 3 1292 504 0 0 0 chr12 92737159 92737215 -28520315 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 3 1292 359 300 69 10 chr12 92737219 92737320 -28520210 - PB1D7 SINE Alu -8 112 6 3 1292 233 274 0 16 chr12 92737264 92737327 -28520203 - ID_B1 SINE B4 -83 141 80 3 1292 361 254 0 0 chr12 92737343 92737414 -28520116 - B1F SINE Alu -10 139 69 3 1292 297 280 154 27 chr12 92737414 92737453 -28520077 - ID_B1 SINE B4 -10 214 91 3 1292 470 232 65 79 chr12 92737792 92738031 -28519499 + LTRIS4 LTR ERV1 281 507 0 3 1292 397 317 49 0 chr12 92738032 92738215 -28519315 - Tigger6a DNA MER2_type -890 193 2 3 1292 421 237 85 70 chr12 92738216 92738316 -28519214 + L1MEg LINE L1 1636 1736 -4348 3 1292 1129 235 141 24 chr12 92738316 92738691 -28518839 - MTD LTR MaLR 0 419 1 3 1292 421 237 85 70 chr12 92738691 92738862 -28518668 + L1MEg LINE L1 1737 1910 -4174 3 1292 1001 102 0 38 chr12 92739271 92739454 -28518076 + (GGGAA)n Simple_repeat Simple_repeat 2 177 0 3 1292 298 289 32 24 chr12 92739573 92739697 -28517833 + L1MB8 LINE L1 6053 6177 -1 3 1292 395 349 25 30 chr12 92739742 92739940 -28517590 - LTR82A LTR ERVL -409 463 267 3 1292 1194 73 0 0 chr12 92740669 92740848 -28516682 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1292 300 80 60 0 chr12 92740880 92740930 -28516600 - HAL1-3A_ME LINE L1 -830 2028 1976 3 1292 1023 112 0 0 chr12 92740939 92741236 -28516294 + (TG)n Simple_repeat Simple_repeat 1 297 0 3 1292 289 125 30 30 chr12 92741566 92741665 -28515865 + T-rich Low_complexity Low_complexity 1 99 0 3 1292 1172 40 0 0 chr12 92742004 92742153 -28515377 - L1Md_F2 LINE L1 0 6582 6434 3 1292 495 233 7 110 chr12 92743135 92743280 -28514250 - B1_Mur2 SINE Alu -12 137 8 3 1292 263 122 41 0 chr12 92743973 92744022 -28513508 + MTE2a LTR MaLR 275 325 -54 3 1292 681 204 61 0 chr12 92744026 92744173 -28513357 - B3 SINE B2 -60 156 1 3 1292 197 242 0 16 chr12 92744217 92744280 -28513250 + L2 LINE L2 1884 1945 -1474 3 1292 1376 162 4 4 chr12 92744280 92744516 -28513014 - MTC LTR MaLR 0 421 186 3 1292 182 419 0 13 chr12 92744528 92744603 -28512927 - L2 LINE L2 -1405 2014 1941 3 1292 1168 159 5 10 chr12 92744603 92744812 -28512718 + MTC LTR MaLR 1 208 -213 3 1292 325 302 56 9 chr12 92744801 92744908 -28512622 - MTE2b LTR MaLR -191 188 77 3 1292 264 318 0 0 chr12 92744998 92745061 -28512469 - RSINE1 SINE B4 -86 79 17 3 1292 610 160 167 8 chr12 92745510 92745636 -28511894 - B1_Mus1 SINE Alu -1 147 2 4 1292 186 143 0 0 chr12 92746304 92746339 -28511191 + (C)n Simple_repeat Simple_repeat 1 35 0 4 1292 1425 91 80 14 chr12 92746713 92746925 -28510605 + URR1A DNA MER1_type 1 226 0 4 1292 761 242 5 27 chr12 92747133 92747320 -28510210 + ID_B1 SINE B4 8 190 -34 4 1292 429 20 0 0 chr12 92748311 92748361 -28509169 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1292 962 270 10 37 chr12 92748395 92748691 -28508839 - B4A SINE B4 -3 289 2 4 1292 197 289 40 20 chr12 92749049 92749148 -28508382 - MIRc SINE MIR -107 161 61 4 1292 347 197 0 0 chr12 92749873 92749934 -28507596 + B3A SINE B2 1 61 -137 4 1292 342 0 0 0 chr12 92749940 92749978 -28507552 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 1292 283 268 14 40 chr12 92750247 92750321 -28507209 - ID SINE ID -142 82 11 4 1292 387 0 0 0 chr12 92750685 92750728 -28506802 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1292 710 215 0 0 chr12 92750886 92751021 -28506509 - B1_Mur2 SINE Alu -1 148 14 4 1292 180 0 0 0 chr12 92751156 92751176 -28506354 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 4 1292 489 295 20 0 chr12 92751250 92751399 -28506131 - MER5A1 DNA MER1_type -3 163 12 4 1292 349 292 33 82 chr12 92752168 92752351 -28505179 - B4 SINE B4 -118 174 1 4 1292 847 240 71 0 chr12 92753764 92753960 -28503570 + B3 SINE B2 1 210 -6 4 1292 186 71 0 0 chr12 92754009 92754037 -28503493 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1292 287 234 0 0 chr12 92754760 92754824 -28502706 + PB1D10 SINE Alu 53 116 -1 4 1292 443 245 176 0 chr12 92757032 92757191 -28500339 - MER53 DNA hAT -5 188 2 4 1292 1020 17 0 0 chr12 92757574 92757692 -28499838 + (TC)n Simple_repeat Simple_repeat 1 118 0 4 1292 501 137 0 50 chr12 92757883 92757983 -28499547 - ORR1B2 LTR MaLR -33 334 240 4 1292 414 0 0 0 chr12 92757983 92758029 -28499501 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1292 375 241 35 63 chr12 92758029 92758070 -28499460 - ORR1B2 LTR MaLR -129 197 157 4 1292 2497 116 23 23 chr12 92758311 92758709 -28498821 - RMER10B LTR ERVL 0 398 1 4 1292 284 333 0 9 chr12 92758764 92758873 -28498657 + B4A SINE B4 184 291 -1 4 1292 228 284 27 0 chr12 92758883 92758957 -28498573 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1292 531 251 172 16 chr12 92758975 92759161 -28498369 + B3 SINE B2 2 216 0 4 1292 327 198 195 17 chr12 92759210 92759328 -28498202 - RMER10A LTR ERVL -6 436 298 4 1292 195 42 0 0 chr12 92759338 92759362 -28498168 + (GGGAGA)n Simple_repeat Simple_repeat 2 25 0 4 1292 234 215 62 0 chr12 92759610 92759675 -28497855 + (CAGAGA)n Simple_repeat Simple_repeat 3 71 0 4 1292 257 167 19 0 chr12 92759692 92759746 -28497784 + G-rich Low_complexity Low_complexity 3 57 0 4 1292 26 50 0 0 chr12 92759878 92759918 -28497612 + AT_rich Low_complexity Low_complexity 1 40 0 4 1292 658 141 310 13 chr12 92761091 92761249 -28496281 - B3 SINE B2 -10 206 2 4 1292 307 243 14 14 chr12 92761360 92761431 -28496099 - ID4_ SINE ID -11 72 2 4 1292 668 245 20 5 chr12 92761523 92761720 -28495810 - L1M5 LINE L1 -682 5482 5283 4 1292 22 35 0 0 chr12 92763041 92763070 -28494460 + AT_rich Low_complexity Low_complexity 1 29 0 4 1292 1099 261 50 50 chr12 92764780 92765123 -28492407 - MTE2b LTR MaLR -36 343 1 4 1292 1030 248 40 40 chr12 92765266 92765615 -28491915 - Lx8 LINE L1 -5 7468 7120 4 1292 329 339 50 58 chr12 92766232 92766595 -28490935 + HAL1 LINE L1 1095 1454 -1053 4 1292 200 93 0 44 chr12 92766681 92766726 -28490804 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 1292 993 296 55 13 chr12 92768003 92768315 -28489215 - MER2 DNA MER2_type -10 335 11 4 1292 187 323 0 0 chr12 92768526 92768591 -28488939 - L2 LINE L2 -958 2461 2397 4 1292 1595 130 4 11 chr12 92768791 92769056 -28488474 - MTC LTR MaLR -8 413 151 4 1292 306 0 0 0 chr12 92769681 92769715 -28487815 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1292 4155 184 59 13 chr12 92769864 92770714 -28486816 - Lx9 LINE L1 0 7644 6756 4 1292 553 250 15 23 chr12 92770714 92770845 -28486685 - ID_B1 SINE B4 -14 210 81 4 1292 592 196 12 128 chr12 92770851 92771015 -28486515 - B1_Mur2 SINE Alu 0 149 5 4 1292 23 0 0 0 chr12 92771027 92771050 -28486480 + AT_rich Low_complexity Low_complexity 1 23 0 4 1292 225 180 0 0 chr12 92771625 92771675 -28485855 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1292 475 286 42 78 chr12 92771897 92772064 -28485466 + RSINE1 SINE B4 4 164 -1 4 1292 2608 189 45 11 chr12 92773428 92773988 -28483542 + Lx9 LINE L1 7059 7637 -7 4 1292 189 274 20 0 chr12 92774049 92774100 -28483430 - L2a LINE L2 -3 3423 3372 4 1292 325 271 45 27 chr12 92774667 92774777 -28482753 + RSINE1 SINE B4 8 119 -46 4 1292 208 98 49 0 chr12 92777454 92777495 -28480035 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 4 1292 354 211 0 84 chr12 92778313 92778396 -28479134 + MT2B LTR ERVL 165 240 -361 4 1292 668 139 111 32 chr12 92778324 92778450 -28479080 + B1_Mus2 SINE Alu 12 147 0 4 1292 375 23 0 0 chr12 92779176 92779220 -28478310 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1292 1837 251 182 11 chr12 92779243 92779787 -28477743 + RMER1A Other Other 70 706 -324 4 1292 502 234 43 90 chr12 92779815 92780003 -28477527 + B4A SINE B4 114 292 0 4 1292 474 143 0 0 chr12 92780004 92780095 -28477435 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 1292 218 32 32 0 chr12 92780454 92780485 -28477045 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1292 1685 176 102 0 chr12 92780678 92780803 -28476727 - ORR1D1 LTR MaLR -5 369 244 4 1292 405 0 0 0 chr12 92780803 92780848 -28476682 + (CAGG)n Simple_repeat Simple_repeat 4 48 0 4 1292 1685 176 102 0 chr12 92780848 92781057 -28476473 - ORR1D1 LTR MaLR -131 243 3 4 1292 422 250 19 9 chr12 92781062 92781167 -28476363 - B4A SINE B4 -185 107 2 4 1292 335 281 47 37 chr12 92781641 92781748 -28475782 + PB1D7 SINE Alu 5 112 -8 4 1292 621 237 202 21 chr12 92782316 92782549 -28474981 + B4A SINE B4 1 275 -17 4 1292 535 272 33 22 chr12 92783426 92783610 -28473920 + MTD LTR MaLR 6 191 -228 4 1292 420 323 31 19 chr12 92784482 92784612 -28472918 - B3 SINE B2 -53 163 32 4 1292 1085 94 0 6 chr12 92784612 92784773 -28472757 + (TTTCC)n Simple_repeat Simple_repeat 4 163 0 4 1292 597 61 0 0 chr12 92784776 92784858 -28472672 + (TTCTC)n Simple_repeat Simple_repeat 4 85 0 4 1292 420 323 31 19 chr12 92784858 92784884 -28472646 - B3 SINE B2 -185 31 5 4 1292 285 29 0 0 chr12 92784894 92784928 -28472602 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1292 393 279 195 11 chr12 92784928 92785014 -28472516 - B4A SINE B4 -86 206 99 4 1292 459 0 0 0 chr12 92785014 92785065 -28472465 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1292 393 279 195 11 chr12 92785065 92785152 -28472378 - B4A SINE B4 -194 98 1 4 1292 444 78 123 49 chr12 92786249 92786330 -28471200 - BC1_Mm scRNA scRNA -64 88 2 4 1292 830 262 14 24 chr12 92786328 92786539 -28470991 - B4 SINE B4 -67 225 17 4 1292 4571 125 44 67 chr12 92787052 92787887 -28469643 + Lx4B LINE L1 5822 6637 -421 4 1292 264 382 24 6 chr12 92788027 92788193 -28469337 - MER58B DNA MER1_type -24 317 149 4 1292 454 257 63 116 chr12 92788251 92788458 -28469072 + B4A SINE B4 1 196 -96 4 1292 830 221 33 0 chr12 92788527 92788708 -28468822 + B3 SINE B2 27 213 -3 4 1292 402 288 95 30 chr12 92788721 92788889 -28468641 - L1MB2 LINE L1 -34 6137 5959 4 1292 3762 25 4 40 chr12 92788981 92789450 -28468080 + L1Md_F2 LINE L1 6131 6582 0 4 1292 907 233 47 5 chr12 92789684 92789874 -28467656 + ID_B1 SINE B4 15 212 -12 4 1292 213 108 0 0 chr12 92789882 92789919 -28467611 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1292 269 336 39 16 chr12 92790738 92790865 -28466665 - MLT1A0 LTR MaLR 0 365 236 4 1292 258 278 11 32 chr12 92790974 92791067 -28466463 - MLT1A0 LTR MaLR -274 91 1 4 1292 28 29 0 0 chr12 92791304 92791339 -28466191 + AT_rich Low_complexity Low_complexity 1 35 0 4 1292 783 28 9 0 chr12 92791339 92791445 -28466085 - B1_Mus2 SINE Alu 0 147 41 4 1292 343 204 51 120 chr12 92791344 92791461 -28466069 - B4 SINE B4 -71 221 113 4 1292 2492 81 164 2 chr12 92791946 92792355 -28465175 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1292 269 217 180 45 chr12 92792842 92792953 -28464577 + Lx8 LINE L1 6258 6383 -1090 4 1292 994 219 19 19 chr12 92793125 92793339 -28464191 + B3 SINE B2 3 216 0 4 1292 22 70 0 0 chr12 92793708 92793751 -28463779 + AT_rich Low_complexity Low_complexity 1 43 0 4 1292 22 0 0 0 chr12 92796473 92796495 -28461035 + AT_rich Low_complexity Low_complexity 1 22 0 4 1292 35 24 0 0 chr12 92797118 92797160 -28460370 + AT_rich Low_complexity Low_complexity 1 42 0 4 1292 21 89 0 0 chr12 92798372 92798428 -28459102 + AT_rich Low_complexity Low_complexity 1 56 0 4 1292 184 267 21 75 chr12 92798738 92798831 -28458699 - L3 LINE CR1 -183 4306 4219 4 1293 353 134 0 0 chr12 92799581 92799648 -28457882 + Lx3A LINE L1 6915 6981 0 4 1293 1087 186 0 5 chr12 92800482 92800682 -28456848 + B3 SINE B2 8 206 -10 4 1293 183 100 0 0 chr12 92800695 92800725 -28456805 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1293 248 250 143 114 chr12 92801099 92801239 -28456291 + ID_B1 SINE B4 81 224 0 4 1293 797 211 29 6 chr12 92801686 92801858 -28455672 + B3 SINE B2 28 203 -13 4 1293 304 164 0 5 chr12 92802466 92802526 -28455004 - L1MB5 LINE L1 -198 5985 5928 4 1293 629 278 81 55 chr12 92802545 92802926 -28454604 - L1MB5 LINE L1 -310 5864 5474 4 1293 775 101 0 163 chr12 92802978 92803021 -28454509 + B1_Mus2 SINE Alu 1 41 -106 5 1293 189 0 0 0 chr12 92803021 92803042 -28454488 + (G)n Simple_repeat Simple_repeat 1 21 0 5 1293 775 101 0 163 chr12 92803042 92803164 -28454366 + B1_Mus2 SINE Alu 42 139 -8 5 1293 758 204 65 12 chr12 92803182 92803351 -28454179 + B3 SINE B2 27 204 -12 5 1293 498 267 100 26 chr12 92803409 92803640 -28453890 - MLT1E1A LTR MaLR -4 676 429 5 1293 479 172 216 0 chr12 92803723 92803839 -28453691 + B1_Mur2 SINE Alu 8 148 -1 5 1293 270 165 77 0 chr12 92803891 92803974 -28453556 + B1_Mur1 SINE Alu 14 142 -7 5 1293 22 0 0 0 chr12 92804000 92804022 -28453508 + AT_rich Low_complexity Low_complexity 1 22 0 5 1293 737 137 17 0 chr12 92804033 92804150 -28453380 + PB1D9 SINE Alu 2 120 0 5 1293 306 169 0 0 chr12 92804150 92804215 -28453315 + A-rich Low_complexity Low_complexity 1 65 0 5 1293 315 49 0 0 chr12 92804554 92804595 -28452935 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 1293 285 211 14 27 chr12 92805237 92805310 -28452220 + RLTR25B LTR ERVK 427 498 -530 5 1293 741 57 0 0 chr12 92805253 92805359 -28452171 + B1_Mus2 SINE Alu 42 147 0 5 1293 434 289 66 20 chr12 92805739 92805891 -28451639 + MTE2a LTR MaLR 56 214 -165 5 1293 288 275 0 0 chr12 92805978 92806069 -28451461 + CT-rich Low_complexity Low_complexity 1 91 0 5 1293 739 260 50 10 chr12 92806891 92807089 -28450441 + B3 SINE B2 11 216 0 5 1293 1218 120 15 20 chr12 92807200 92807396 -28450134 + B2_Mm2 SINE B2 1 195 0 5 1293 1165 48 0 20 chr12 92807482 92807630 -28449900 + B1_Mus2 SINE Alu 3 147 0 5 1293 222 262 81 35 chr12 92807925 92808012 -28449518 - ID_B1 SINE B4 -52 172 82 5 1293 501 127 0 0 chr12 92808527 92808606 -28448924 + (CACG)n Simple_repeat Simple_repeat 1 79 0 5 1293 452 269 43 29 chr12 92808708 92808846 -28448684 - B1F1 SINE Alu 0 149 10 5 1293 382 187 76 0 chr12 92808855 92808964 -28448566 - PB1D7 SINE Alu 0 120 5 5 1293 695 231 72 43 chr12 92809282 92809490 -28448040 + B3 SINE B2 1 214 -2 5 1293 480 184 165 0 chr12 92810191 92810294 -28447236 + PB1D9 SINE Alu 1 120 0 5 1293 192 97 0 0 chr12 92810294 92810325 -28447205 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1293 312 298 110 19 chr12 92810342 92810496 -28447034 + Lx8 LINE L1 7279 7446 -27 5 1293 24 0 0 0 chr12 92810510 92810534 -28446996 + AT_rich Low_complexity Low_complexity 1 24 0 5 1293 724 106 42 7 chr12 92810546 92810689 -28446841 + RMER17B LTR ERVK 316 463 -495 5 1293 25 51 0 0 chr12 92811259 92811298 -28446232 + AT_rich Low_complexity Low_complexity 1 39 0 5 1293 543 244 9 0 chr12 92811307 92811422 -28446108 + PB1D10 SINE Alu 1 116 -1 5 1293 431 283 92 77 chr12 92811510 92811770 -28445760 + B4 SINE B4 18 281 -11 5 1293 598 242 15 0 chr12 92812042 92812174 -28445356 + RSINE1 SINE B4 8 141 -24 5 1293 297 0 0 0 chr12 92812186 92812219 -28445311 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1293 760 143 0 0 chr12 92812518 92812637 -28444893 - B1_Mus2 SINE Alu -6 141 23 5 1293 183 290 28 28 chr12 92812641 92812712 -28444818 + MIRc SINE MIR 98 168 -100 5 1293 1385 71 33 0 chr12 92812830 92813012 -28444518 + B2_Mm1t SINE B2 2 189 -4 5 1293 265 132 56 19 chr12 92813475 92813529 -28444001 - PB1D9 SINE Alu 0 120 65 5 1293 909 187 41 41 chr12 92813483 92813678 -28443852 - ID_B1 SINE B4 -7 217 23 5 1293 1333 93 0 5 chr12 92813771 92813955 -28443575 + B2_Mm2 SINE B2 2 184 -11 5 1293 180 77 0 0 chr12 92814097 92814123 -28443407 + (TGG)n Simple_repeat Simple_repeat 1 26 0 5 1293 240 35 0 0 chr12 92815895 92815924 -28441606 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5 1293 315 191 0 0 chr12 92815926 92815989 -28441541 + GA-rich Low_complexity Low_complexity 3 65 0 5 1293 260 347 14 0 chr12 92815991 92816063 -28441467 + RSINE1 SINE B4 85 157 -8 5 1293 528 218 0 7 chr12 92816158 92816274 -28441256 + B1_Mur3 SINE Alu 1 112 -8 5 1293 276 100 0 0 chr12 92816350 92816390 -28441140 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1293 1157 61 7 0 chr12 92816390 92816537 -28440993 - B1_Mus1 SINE Alu 0 148 1 5 1293 240 111 0 0 chr12 92816602 92816638 -28440892 + (TATG)n Simple_repeat Simple_repeat 2 37 0 5 1293 335 271 127 66 chr12 92816657 92816823 -28440707 - B3A SINE B2 -21 177 2 5 1293 277 94 18 36 chr12 92817080 92817095 -28440435 + (GAAAA)n Simple_repeat Simple_repeat 4 18 0 5 1293 1680 16 11 0 chr12 92817095 92817285 -28440245 + B2_Mm1a SINE B2 2 193 0 5 1293 277 94 18 36 chr12 92817285 92817324 -28440206 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 5 1293 748 181 7 35 chr12 92817534 92817677 -28439853 + B1_Mus2 SINE Alu 1 139 -8 5 1293 482 200 158 91 chr12 92818001 92818210 -28439320 - Tigger7 DNA MER2_type -88 2403 2181 5 1293 702 357 18 0 chr12 92818238 92818521 -28439009 - Tigger7 DNA MER2_type -2188 303 16 5 1293 938 212 26 10 chr12 92818521 92818716 -28438814 + B3 SINE B2 5 202 -14 5 1293 504 176 39 10 chr12 92819000 92819103 -28438427 + PB1D9 SINE Alu 2 107 -13 5 1293 550 220 17 17 chr12 92819675 92819795 -28437735 - B3 SINE B2 -96 120 1 5 1293 191 361 16 40 chr12 92820125 92820249 -28437281 - MIRc SINE MIR -85 183 63 5 1293 426 276 152 17 chr12 92821677 92821854 -28435676 - MER3 DNA MER1_type -7 202 2 5 1293 360 297 167 20 chr12 92823631 92823882 -28433648 - B4A SINE B4 -2 290 3 5 1293 843 200 39 44 chr12 92824000 92824023 -28433507 - B3 SINE B2 -13 203 186 5 1293 3319 43 5 2 chr12 92824023 92824418 -28433112 + MTA_Mm LTR MaLR 1 396 0 5 1293 843 200 39 44 chr12 92824418 92824598 -28432932 - B3 SINE B2 -31 185 1 5 1293 219 345 42 25 chr12 92824860 92824979 -28432551 - MIR SINE MIR -28 234 114 5 1293 24 0 0 0 chr12 92825303 92825327 -28432203 + AT_rich Low_complexity Low_complexity 1 24 0 5 1293 300 180 32 0 chr12 92825408 92825477 -28432053 + B1F2 SINE Alu 35 105 -15 5 1293 28 0 0 0 chr12 92827075 92827103 -28430427 + AT_rich Low_complexity Low_complexity 1 28 0 5 1293 198 103 0 0 chr12 92827472 92827501 -28430029 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 5 1293 37 107 0 0 chr12 92827730 92827879 -28429651 + GC_rich Low_complexity Low_complexity 1 149 0 5 1293 207 100 0 0 chr12 92827879 92827909 -28429621 + (TCCG)n Simple_repeat Simple_repeat 2 31 0 5 1293 305 78 0 56 chr12 92828040 92828094 -28429436 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1293 198 0 0 0 chr12 92828452 92828474 -28429056 + (CCG)n Simple_repeat Simple_repeat 1 22 0 5 1293 202 262 0 16 chr12 92828475 92828537 -28428993 + (CGGGG)n Simple_repeat Simple_repeat 4 64 0 5 1293 26 74 0 0 chr12 92828595 92828649 -28428881 + GC_rich Low_complexity Low_complexity 1 54 0 5 1293 376 195 49 0 chr12 92829839 92829921 -28427609 - PB1D9 SINE Alu -34 86 1 5 1293 195 129 0 0 chr12 92829960 92829991 -28427539 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1293 540 160 0 168 chr12 92829991 92830134 -28427396 - PB1D9 SINE Alu 0 120 2 5 1293 1193 41 0 7 chr12 92830344 92830492 -28427038 + B1_Mus2 SINE Alu 1 147 0 5 1293 225 0 0 0 chr12 92830496 92830521 -28427009 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1293 1333 92 16 0 chr12 92831085 92831269 -28426261 - B2_Mm2 SINE B2 -8 187 1 5 1293 433 229 101 0 chr12 92831396 92831505 -28426025 + PB1D9 SINE Alu 1 120 0 5 1293 207 69 0 0 chr12 92831681 92831710 -28425820 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1293 231 203 189 0 chr12 92831733 92831807 -28425723 - MLT2B1 LTR ERVL -333 187 100 5 1293 305 318 47 0 chr12 92832174 92832281 -28425249 + L1MC5 LINE L1 6640 6751 -1210 5 1293 1922 141 78 8 chr12 92832293 92832650 -28424880 + RLTR14 LTR ERV1 1 382 0 5 1293 510 285 108 5 chr12 92832696 92832890 -28424640 + ID_B1 SINE B4 11 224 0 5 1293 345 269 0 11 chr12 92833106 92833200 -28424330 + MLT2B1 LTR ERVL 1 93 -422 5 1293 438 340 68 91 chr12 92833606 92833984 -28423546 + MLT2B1 LTR ERVL 107 493 -61 5 1293 419 224 8 47 chr12 92834064 92834191 -28423339 - B1F SINE Alu -22 128 6 5 1293 2962 40 13 0 chr12 92834214 92834594 -28422936 + MTA_Mm LTR MaLR 1 385 -11 5 1293 8208 70 17 3 chr12 92834595 92835678 -28421852 + MTA_Mm-int LTR MaLR 1 1098 0 5 1293 3390 46 2 0 chr12 92835678 92836073 -28421457 + MTA_Mm LTR MaLR 1 396 0 5 1293 918 130 65 0 chr12 92836186 92836324 -28421206 + B1_Mus1 SINE Alu 1 147 -1 5 1293 456 19 0 0 chr12 92836324 92836377 -28421153 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1293 577 246 73 47 chr12 92836377 92836569 -28420961 + B3A SINE B2 2 198 0 5 1293 241 379 11 0 chr12 92836806 92836893 -28420637 - ID_B1 SINE B4 -57 167 80 5 1293 707 196 34 27 chr12 92836895 92837042 -28420488 - B1_Mus1 SINE Alu 0 148 1 5 1293 230 213 81 16 chr12 92837591 92837653 -28419877 - MTEa LTR MaLR 0 379 314 5 1293 707 170 52 39 chr12 92837655 92837808 -28419722 + ORR1C1 LTR MaLR 3 157 -221 5 1293 960 96 89 0 chr12 92837808 92837943 -28419587 + B1_Mus1 SINE Alu 1 147 -1 5 1293 468 132 0 0 chr12 92838009 92838085 -28419445 + ORR1C1 LTR MaLR 273 348 -19 5 1293 637 305 59 37 chr12 92838090 92838362 -28419168 - MTEa LTR MaLR -86 293 16 5 1293 350 264 66 0 chr12 92838509 92838600 -28418930 + B1F2 SINE Alu 33 129 -20 5 1293 29 0 0 0 chr12 92838600 92838629 -28418901 + AT_rich Low_complexity Low_complexity 1 29 0 5 1293 277 86 0 33 chr12 92838693 92838753 -28418777 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 5 1293 891 243 19 9 chr12 92839023 92839235 -28418295 - B3 SINE B2 0 216 3 5 1293 346 206 40 40 chr12 92839590 92839691 -28417839 + MTEb LTR MaLR 272 372 -7 5 1293 9487 30 0 0 chr12 92839790 92841547 -28415983 - L1Md_T LINE L1 0 6582 4827 5 1293 21 36 0 0 chr12 92841681 92841709 -28415821 + AT_rich Low_complexity Low_complexity 1 28 0 6 1293 606 206 143 0 chr12 92841817 92841943 -28415587 + B1_Mur1 SINE Alu 5 148 -1 6 1293 1146 75 0 0 chr12 92841948 92842095 -28415435 + B1_Mus1 SINE Alu 2 148 0 6 1293 189 94 0 0 chr12 92842096 92842128 -28415402 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1293 341 326 28 7 chr12 92842551 92842696 -28414834 + MIRb SINE MIR 111 258 -10 6 1293 484 240 16 24 chr12 92843807 92843931 -28413599 - ID_B1 SINE B4 -7 217 95 6 1293 782 265 16 113 chr12 92843983 92844159 -28413371 + RCHARR1 DNA MER1_type 3 168 -806 6 1293 1112 56 0 40 chr12 92844159 92844308 -28413222 - B1_Mus1 SINE Alu -5 143 1 6 1293 782 265 16 113 chr12 92844308 92844450 -28413080 + RCHARR1 DNA MER1_type 169 290 -684 6 1293 634 275 26 16 chr12 92844444 92844636 -28412894 - ID_B1 SINE B4 -29 195 2 6 1293 282 196 0 0 chr12 92844636 92844692 -28412838 + RCHARR1 DNA MER1_type 882 937 -37 6 1293 513 300 47 0 chr12 92844698 92844848 -28412682 + B3A SINE B2 1 157 -41 6 1293 660 250 0 26 chr12 92844875 92845027 -28412503 + B1_Mur2 SINE Alu 2 149 0 6 1293 1661 302 85 24 chr12 92846573 92846907 -28410623 - L1MB3 LINE L1 -8 6175 5826 6 1293 1315 73 68 0 chr12 92846907 92847084 -28410446 - B2_Mm1t SINE B2 -3 190 2 6 1293 1661 302 85 24 chr12 92847084 92847598 -28409932 - L1MB3 LINE L1 -358 5825 5275 6 1293 316 138 17 33 chr12 92847605 92847665 -28409865 + B1_Mus1 SINE Alu 2 60 -88 6 1293 416 37 0 0 chr12 92847759 92847813 -28409717 + B1_Mus2 SINE Alu 42 95 -52 6 1293 756 281 121 7 chr12 92847919 92848191 -28409339 - L1M4c LINE L1 -6014 370 68 6 1293 210 128 0 0 chr12 92848326 92848365 -28409165 + (TTCTC)n Simple_repeat Simple_repeat 2 40 0 6 1293 1447 40 11 11 chr12 92848716 92848895 -28408635 + B2_Mm2 SINE B2 2 180 -15 6 1293 462 36 0 0 chr12 92848895 92848951 -28408579 + (GAAA)n Simple_repeat Simple_repeat 4 59 0 6 1293 406 244 0 0 chr12 92848965 92849043 -28408487 + B3A SINE B2 1 78 -120 6 1293 396 0 0 0 chr12 92849073 92849117 -28408413 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1293 234 0 0 0 chr12 92849117 92849142 -28408388 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1293 1238 246 31 43 chr12 92849147 92849496 -28408034 + ORR1C1 LTR MaLR 33 377 -1 6 1293 698 174 0 24 chr12 92849509 92849633 -28407897 + B3 SINE B2 88 208 -8 6 1293 457 246 172 12 chr12 92849639 92849808 -28407722 - MLT1A1 LTR MaLR -49 359 164 6 1293 2089 249 134 114 chr12 92849808 92850332 -28407198 + Lx8 LINE L1 6302 6829 -644 6 1293 332 22 22 0 chr12 92850332 92850377 -28407153 + (TTTG)n Simple_repeat Simple_repeat 4 49 0 6 1293 2089 249 134 114 chr12 92850377 92850999 -28406531 + Lx8 LINE L1 6830 7471 -2 6 1293 222 191 0 0 chr12 92851133 92851180 -28406350 + (CTG)n Simple_repeat Simple_repeat 1 47 0 6 1293 551 152 250 0 chr12 92851180 92851292 -28406238 - B1_Mus1 SINE Alu -6 142 3 6 1293 289 156 0 0 chr12 92851422 92851467 -28406063 - B1F1 SINE Alu -100 49 5 6 1293 262 196 0 0 chr12 92851426 92851472 -28406058 - ID_B1 SINE B4 -98 126 81 6 1293 407 255 47 0 chr12 92851761 92851867 -28405663 + PB1D7 SINE Alu 3 113 -7 6 1293 198 191 0 0 chr12 92851876 92851918 -28405612 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 6 1293 321 100 0 0 chr12 92851918 92851968 -28405562 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1293 315 0 0 0 chr12 92851968 92852002 -28405528 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1293 1241 108 17 0 chr12 92852070 92852246 -28405284 + B2_Mm2 SINE B2 3 181 -14 6 1293 778 248 18 8 chr12 92852297 92852483 -28405047 + B3A SINE B2 9 193 -23 6 1293 273 57 0 0 chr12 92852483 92852518 -28405012 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 6 1293 541 259 34 61 chr12 92852539 92852687 -28404843 + RSINE1 SINE B4 3 146 -19 6 1293 2108 151 5 5 chr12 92852704 92852849 -28404681 - RLTR14 LTR ERV1 0 382 239 6 1293 324 120 0 0 chr12 92852849 92852899 -28404631 + (CACG)n Simple_repeat Simple_repeat 1 50 0 6 1293 2108 151 5 5 chr12 92852899 92853133 -28404397 - RLTR14 LTR ERV1 -144 238 3 6 1293 306 0 0 0 chr12 92853155 92853189 -28404341 + (CAA)n Simple_repeat Simple_repeat 2 35 0 6 1293 857 232 113 67 chr12 92853230 92853407 -28404123 + Lx7 LINE L1 7020 7215 -481 6 1293 468 0 0 0 chr12 92853407 92853459 -28404071 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1293 807 139 279 0 chr12 92853460 92853618 -28403912 - B3 SINE B2 -12 204 3 6 1293 857 232 113 67 chr12 92853618 92853826 -28403704 + Lx7 LINE L1 7216 7425 -271 6 1293 779 145 13 46 chr12 92853915 92854067 -28403463 + B1_Mur4 SINE Alu 3 149 -1 6 1293 334 270 18 92 chr12 92854156 92854319 -28403211 + L1M2 LINE L1 5171 5321 -822 6 1293 324 262 28 9 chr12 92854368 92854380 -28403150 + L1M2 LINE L1 5321 5334 -963 6 1293 1539 201 66 14 chr12 92854380 92854729 -28402801 - ORR1B2 LTR MaLR 0 367 1 6 1293 384 249 54 87 chr12 92854729 92855023 -28402507 + L1M2 LINE L1 5335 5683 -506 6 1293 613 261 23 50 chr12 92855201 92855419 -28402111 - RLTR42-int LTR ERVK -4122 1400 1189 6 1293 409 191 9 9 chr12 92855852 92855968 -28401562 + GA-rich Low_complexity Low_complexity 3 118 0 6 1293 2151 172 29 17 chr12 92855990 92856288 -28401242 - MTC LTR MaLR -8 413 106 6 1293 1529 73 0 5 chr12 92856288 92856482 -28401048 + B2_Mm2 SINE B2 2 194 -1 6 1293 2151 172 29 17 chr12 92856482 92856591 -28400939 - MTC LTR MaLR -316 105 1 6 1293 389 301 73 35 chr12 92856913 92857211 -28400319 - MLT1G3 LTR MaLR -90 489 173 6 1293 214 29 0 54 chr12 92857695 92857732 -28399798 + (TTA)n Simple_repeat Simple_repeat 2 36 0 6 1293 700 206 119 11 chr12 92857736 92857913 -28399617 - B3 SINE B2 -18 198 3 6 1293 743 47 68 30 chr12 92858121 92858253 -28399277 + L1_Mus3 LINE L1 6502 6638 0 6 1293 225 274 16 0 chr12 92858283 92858345 -28399185 + RSINE1 SINE B4 56 118 -47 6 1293 840 124 0 0 chr12 92858392 92858521 -28399009 + B1_Mur4 SINE Alu 9 137 -13 6 1293 784 224 209 5 chr12 92858522 92858733 -28398797 + Lx5 LINE L1 6792 7045 -5 6 1293 25 0 0 0 chr12 92858734 92858759 -28398771 + AT_rich Low_complexity Low_complexity 1 25 0 6 1293 263 203 0 15 chr12 92858788 92858853 -28398677 + GA-rich Low_complexity Low_complexity 2 65 0 6 1293 809 189 47 134 chr12 92859237 92859469 -28398061 + B3 SINE B2 5 216 0 6 1293 997 124 0 0 chr12 92859493 92859638 -28397892 + B1_Mus1 SINE Alu 1 145 -3 6 1293 539 142 33 0 chr12 92859789 92859909 -28397621 + CT-rich Low_complexity Low_complexity 1 124 0 6 1293 706 169 30 15 chr12 92860205 92860337 -28397193 + B1_Mus1 SINE Alu 6 139 -9 6 1293 594 0 0 0 chr12 92860337 92860403 -28397127 + (CAAAC)n Simple_repeat Simple_repeat 2 67 0 6 1293 1417 229 65 36 chr12 92860424 92860872 -28396658 + Lx7 LINE L1 491 951 -6777 6 1293 636 192 8 0 chr12 92860878 92861003 -28396527 + B1_Mur2 SINE Alu 23 148 -1 6 1293 395 171 0 0 chr12 92861006 92861076 -28396454 + Lx7 LINE L1 4140 4209 -1671 6 1293 2515 80 0 12 chr12 92861076 92861406 -28396124 + ORR1A3 LTR MaLR 1 326 0 6 1293 5142 165 55 25 chr12 92861406 92862823 -28394707 + Lx7 LINE L1 4836 6298 -1398 6 1293 1857 197 156 58 chr12 92862819 92863273 -28394257 + Lx7 LINE L1 7040 7564 -132 6 1293 1152 48 7 27 chr12 92863273 92863423 -28394107 - B1_Mus2 SINE Alu 0 147 1 6 1293 1857 197 156 58 chr12 92863423 92863566 -28393964 + Lx7 LINE L1 7565 7695 -1 6 1293 1410 235 75 62 chr12 92863758 92864144 -28393386 - Lx5 LINE L1 -17 7033 6643 6 1293 207 249 6 112 chr12 92864153 92864277 -28393253 + MIR SINE MIR 90 203 -59 6 1293 249 297 40 112 chr12 92864348 92864405 -28393125 - Lx8 LINE L1 -172 7301 7242 6 1293 1164 115 5 27 chr12 92864405 92864593 -28392937 + B2_Mm1t SINE B2 3 186 -7 6 1293 249 297 40 112 chr12 92864593 92864660 -28392870 - Lx8 LINE L1 -232 7241 7186 6 1293 2850 159 28 130 chr12 92864901 92865717 -28391813 - RMER6A LTR ERVK 0 756 24 6 1293 205 152 0 0 chr12 92865942 92865975 -28391555 + CT-rich Low_complexity Low_complexity 2 34 0 6 1293 588 153 36 0 chr12 92866674 92866785 -28390745 + PB1D9 SINE Alu 5 119 -1 6 1293 1194 211 46 21 chr12 92866978 92867263 -28390267 - ORR1D1 LTR MaLR -82 292 1 6 1293 262 174 85 0 chr12 92867420 92867498 -28390032 - B1_Mur2 SINE Alu -17 132 12 6 1293 628 223 7 35 chr12 92867556 92867700 -28389830 + B1_Mur4 SINE Alu 11 150 0 6 1293 464 326 89 50 chr12 92867735 92868034 -28389496 - RMER4A LTR ERVK -13 453 155 6 1293 228 35 0 0 chr12 92868034 92868063 -28389467 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1293 464 326 89 50 chr12 92868063 92868199 -28389331 - RMER4A LTR ERVK -312 154 1 6 1293 514 264 101 0 chr12 92868205 92868364 -28389166 - B3A SINE B2 -16 182 8 6 1293 1196 74 117 0 chr12 92868740 92868902 -28388628 - B2_Mm2 SINE B2 -14 181 1 6 1293 12191 58 34 32 chr12 92869398 92871202 -28386328 - RLTR22_Mus LTR ERVK 0 1808 1 6 1293 233 57 0 28 chr12 92872560 92872596 -28384934 + (AGGGGG)n Simple_repeat Simple_repeat 2 36 0 6 1293 22 35 0 0 chr12 92873657 92873686 -28383844 + AT_rich Low_complexity Low_complexity 1 29 0 6 1293 1202 55 0 7 chr12 92873934 92874082 -28383448 + B1_Mm SINE Alu 1 147 0 6 1293 239 194 0 111 chr12 92874978 92875071 -28382459 - ID4_ SINE ID -54 98 16 6 1293 256 354 10 39 chr12 92876235 92876338 -28381192 - L3 LINE CR1 -432 4057 3958 6 1293 327 19 38 19 chr12 92876488 92876541 -28380989 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1293 794 194 14 0 chr12 92876977 92877121 -28380409 - B1_Mus1 SINE Alu 0 148 3 6 1293 1281 96 37 0 chr12 92878762 92878949 -28378581 + B2_Mm2 SINE B2 2 195 0 6 1293 886 124 231 23 chr12 92878981 92879154 -28378376 + B3 SINE B2 2 210 -6 6 1293 220 297 154 0 chr12 92879552 92879643 -28377887 + PB1D7 SINE Alu 8 112 -8 6 1293 709 193 189 22 chr12 92880592 92880777 -28376753 + B3 SINE B2 1 216 0 6 1293 369 0 0 0 chr12 92881626 92881667 -28375863 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1293 306 355 17 34 chr12 92881806 92881981 -28375549 - MIRb SINE MIR -92 176 5 6 1293 1121 110 0 0 chr12 92882123 92882269 -28375261 - B1_Mus1 SINE Alu 0 148 3 6 1293 604 104 142 0 chr12 92882566 92882672 -28374858 + B1_Mus1 SINE Alu 18 138 -10 6 1293 214 182 0 0 chr12 92883291 92883335 -28374195 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 6 1293 1205 68 0 0 chr12 92883348 92883495 -28374035 + B1_Mus1 SINE Alu 2 148 0 7 1293 1146 132 71 0 chr12 92883519 92883701 -28373829 + B2_Mm2 SINE B2 1 195 0 7 1293 833 223 14 28 chr12 92884928 92885145 -28372385 + B3 SINE B2 2 215 -1 7 1293 565 291 12 35 chr12 92885174 92885345 -28372185 + B4 SINE B4 124 290 -2 7 1293 1157 68 7 0 chr12 92887901 92888047 -28369483 - B1_Mus1 SINE Alu 0 148 2 7 1293 546 132 11 21 chr12 92888105 92888198 -28369332 + B1_Mus2 SINE Alu 55 146 -1 7 1293 180 0 0 0 chr12 92888207 92888227 -28369303 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1293 241 371 71 15 chr12 92888480 92888677 -28368853 + RMER4A LTR ERVK 6 213 -253 7 1293 2585 59 226 8 chr12 92888856 92889214 -28368316 + RLTR10C LTR ERVK 1 436 0 7 1293 802 68 10 0 chr12 92889214 92889317 -28368213 + MMERVK10C-int LTR ERVK 1 104 -7477 7 1293 248 227 0 0 chr12 92889317 92889361 -28368169 + RLTR27 LTR ERVK 232 275 -34 7 1293 364 22 0 61 chr12 92889361 92889410 -28368120 + MMERVK10C-int LTR ERVK 225 270 -7311 7 1293 295 96 30 69 chr12 92889496 92889597 -28367933 + GA-rich Low_complexity Low_complexity 3 99 0 7 1293 357 89 0 0 chr12 92889597 92889642 -28367888 + RLTR10-int LTR ERVK 93 137 -6405 7 1293 2859 44 9 0 chr12 92889645 92889983 -28367547 + RLTR10-int LTR ERVK 652 992 -995 7 1293 569 298 37 34 chr12 92890122 92890402 -28367128 + IAP-d-int LTR ERVK 822 1063 -5479 7 1293 349 175 0 0 chr12 92890419 92890476 -28367054 + IAP-d-int LTR ERVK 447 503 -6039 7 1293 1424 121 112 0 chr12 92890476 92890700 -28366830 + IAP-d-int LTR ERVK 5007 5255 -1287 7 1293 4207 145 15 13 chr12 92890704 92891389 -28366141 + IAPEY3-int LTR ERVK 6995 7680 0 7 1293 2545 65 226 8 chr12 92891389 92891747 -28365783 + RLTR10C LTR ERVK 1 436 0 7 1293 300 211 0 0 chr12 92892074 92892145 -28365385 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1293 355 301 21 0 chr12 92892364 92892457 -28365073 + B1F1 SINE Alu 1 95 -54 7 1293 287 218 89 13 chr12 92892489 92892568 -28364962 + B4 SINE B4 1 85 -207 7 1293 378 0 0 0 chr12 92893393 92893435 -28364095 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1293 362 309 119 38 chr12 92893451 92893636 -28363894 + L1M5 LINE L1 5622 5821 -303 7 1293 215 365 54 20 chr12 92893695 92893843 -28363687 + MIR SINE MIR 18 170 -92 7 1293 322 293 115 2 chr12 92894061 92894180 -28363350 + B4A SINE B4 10 140 -152 7 1293 194 265 145 14 chr12 92894877 92894946 -28362584 - MIR3 SINE MIR -38 170 93 7 1293 553 251 180 0 chr12 92894946 92895129 -28362401 + B3 SINE B2 1 216 0 7 1293 941 212 42 24 chr12 92896774 92896986 -28360544 + B3 SINE B2 1 216 0 7 1293 794 143 57 7 chr12 92897425 92897545 -28359985 + B1_Mur2 SINE Alu 2 127 -22 7 1293 776 11 11 0 chr12 92897545 92897638 -28359892 + (GA)n Simple_repeat Simple_repeat 1 94 0 7 1293 794 143 57 7 chr12 92897638 92897658 -28359872 + B1_Mur2 SINE Alu 128 148 -1 7 1293 394 256 37 0 chr12 92897696 92897778 -28359752 + B4A SINE B4 1 85 -207 7 1293 2307 169 29 0 chr12 92897799 92898183 -28359347 + RMER1B Other Other 400 794 -272 7 1293 514 103 0 0 chr12 92898182 92898260 -28359270 + RMER1B Other Other 976 1053 -13 7 1293 577 329 0 0 chr12 92898305 92898445 -28359085 + B4A SINE B4 82 221 -71 7 1293 437 269 154 0 chr12 92898457 92898561 -28358969 + B3A SINE B2 1 120 -78 7 1293 237 313 66 44 chr12 92898561 92898594 -28358936 + B4A SINE B4 1 140 -152 7 1293 1213 54 0 0 chr12 92898728 92898875 -28358655 - B1_Mus1 SINE Alu -1 147 1 7 1293 23 0 0 0 chr12 92898927 92898950 -28358580 + AT_rich Low_complexity Low_complexity 1 23 0 7 1293 22 0 0 0 chr12 92899013 92899035 -28358495 + AT_rich Low_complexity Low_complexity 1 22 0 7 1293 243 0 0 0 chr12 92899354 92899381 -28358149 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1293 620 130 23 61 chr12 92899505 92899636 -28357894 + RMER1A Other Other 903 1028 -2 7 1293 2490 140 167 29 chr12 92899689 92900203 -28357327 - RMER4B LTR ERVK 0 585 1 7 1293 1273 34 0 0 chr12 92900310 92900457 -28357073 + B1_Mus1 SINE Alu 2 148 0 7 1293 254 65 0 0 chr12 92900533 92900564 -28356966 - PB1D9 SINE Alu -73 47 17 7 1293 228 295 95 0 chr12 92900759 92900854 -28356676 + MLT1N2 LTR MaLR 435 538 -24 7 1293 414 0 0 0 chr12 92901171 92901217 -28356313 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1293 394 328 55 59 chr12 92901912 92902211 -28355319 + MLT1A1 LTR MaLR 5 332 -76 7 1293 506 277 76 15 chr12 92903166 92903298 -28354232 + ID_B1 SINE B4 84 223 -1 7 1293 186 302 40 40 chr12 92903950 92904050 -28353480 - MIRc SINE MIR -106 162 63 7 1293 222 279 104 19 chr12 92904182 92904288 -28353242 - PB1 SINE Alu -11 116 2 7 1293 304 308 28 103 chr12 92904477 92904514 -28353016 - B1_Mur4 SINE Alu -2 148 117 7 1293 477 270 296 0 chr12 92904514 92904673 -28352857 - B3 SINE B2 -6 210 5 7 1293 474 255 13 14 chr12 92904673 92904780 -28352750 - PB1D10 SINE Alu -34 116 14 7 1293 814 179 21 0 chr12 92904866 92905006 -28352524 + B1_Mus2 SINE Alu 5 147 0 7 1293 203 0 37 0 chr12 92905008 92905035 -28352495 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1293 22 70 0 0 chr12 92907622 92907665 -28349865 + AT_rich Low_complexity Low_complexity 1 43 0 7 1293 591 94 0 0 chr12 92907666 92907762 -28349768 + (TC)n Simple_repeat Simple_repeat 1 96 0 7 1293 374 0 22 0 chr12 92907762 92907808 -28349722 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1293 700 234 47 29 chr12 92907816 92907988 -28349542 - B3A SINE B2 -23 175 1 7 1293 272 284 53 76 chr12 92908163 92908388 -28349142 - L1ME3A LINE L1 0 6173 5954 7 1293 301 335 97 0 chr12 92908401 92908556 -28348974 - L1ME3A LINE L1 -359 5814 5645 7 1293 404 325 28 54 chr12 92908586 92908844 -28348686 - L1ME3A LINE L1 -603 5570 5325 7 1293 531 205 5 161 chr12 92908844 92909036 -28348494 - RSINE1 SINE B4 -1 164 3 7 1293 404 291 15 109 chr12 92909036 92909288 -28348242 - L1ME3A LINE L1 -822 5324 5089 7 1293 1181 40 0 69 chr12 92909322 92909481 -28348049 + B1_Mus1 SINE Alu 1 148 0 7 1293 219 139 0 0 chr12 92909481 92909517 -28348013 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1293 325 259 81 23 chr12 92909817 92909904 -28347626 - ORR1E LTR MaLR 0 379 288 7 1293 1287 171 23 0 chr12 92909913 92910130 -28347400 - URR1A DNA MER1_type 0 226 5 7 1293 465 71 0 0 chr12 92910306 92910376 -28347154 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1293 333 68 0 0 chr12 92910376 92910420 -28347110 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1293 653 243 116 47 chr12 92910422 92910612 -28346918 - ORR1E LTR MaLR -153 206 4 7 1293 231 247 52 73 chr12 92911207 92911303 -28346227 - MARNA DNA Mariner -166 420 327 7 1293 225 361 73 9 chr12 92912134 92912243 -28345287 + MIRb SINE MIR 118 233 -35 7 1293 896 216 71 16 chr12 92912418 92912602 -28344928 - B3 SINE B2 -1 215 22 7 1293 721 160 0 8 chr12 92914032 92914152 -28343378 + B1_Mus2 SINE Alu 22 140 -7 7 1293 396 0 0 0 chr12 92914211 92914255 -28343275 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1293 450 0 0 0 chr12 92914670 92914720 -28342810 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1293 1182 113 11 6 chr12 92914962 92915140 -28342390 + B2_Mm1t SINE B2 1 179 -14 7 1293 381 110 322 76 chr12 92915224 92915342 -28342188 + B2_Mm2 SINE B2 47 193 -2 7 1293 652 64 85 0 chr12 92915437 92915531 -28341999 - B2_Mm2 SINE B2 -5 190 89 7 1293 363 290 92 0 chr12 92916069 92916223 -28341307 + L1MEg LINE L1 1804 1952 -4132 7 1293 425 267 6 112 chr12 92916231 92916243 -28341287 - MT2B LTR ERVL -329 272 250 7 1293 636 82 31 0 chr12 92916243 92916340 -28341190 - B1_Mus1 SINE Alu -39 109 10 7 1293 425 267 6 112 chr12 92916340 92916400 -28341130 - MT2B LTR ERVL -329 249 122 7 1293 932 147 47 37 chr12 92916769 92916960 -28340570 - B2_Mm2 SINE B2 -1 194 2 7 1293 667 204 91 79 chr12 92917050 92917215 -28340315 + B3 SINE B2 37 203 -13 7 1293 669 157 19 97 chr12 92918452 92918607 -28338923 + URR1A DNA MER1_type 81 223 -3 7 1293 245 258 81 0 chr12 92919065 92919127 -28338403 + B4A SINE B4 185 251 -41 7 1293 430 165 99 20 chr12 92919105 92919219 -28338311 + PB1D9 SINE Alu 6 132 -17 7 1293 228 190 51 17 chr12 92919362 92919421 -28338109 - PB1D10 SINE Alu -12 105 45 7 1293 183 129 0 0 chr12 92919996 92920027 -28337503 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1293 631 126 0 16 chr12 92920031 92920160 -28337370 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 7 1293 400 214 204 0 chr12 92920163 92920266 -28337264 - B1_Mur3 SINE Alu -9 140 17 7 1293 245 216 148 40 chr12 92920190 92920291 -28337239 - MT2B LTR ERVL -344 257 146 7 1293 299 284 34 11 chr12 92921044 92921133 -28336397 - MLT1H LTR MaLR 0 549 459 7 1293 368 278 61 10 chr12 92921266 92921364 -28336166 - MLT1H LTR MaLR -312 237 135 7 1293 858 118 96 0 chr12 92921391 92921526 -28336004 + B1_Mur4 SINE Alu 2 149 -1 7 1293 246 307 137 10 chr12 92925646 92925748 -28331782 + PB1D7 SINE Alu 6 120 0 7 1293 464 169 101 0 chr12 92925769 92925858 -28331672 + B1_Mur1 SINE Alu 45 142 -7 7 1293 290 24 0 45 chr12 92925863 92925907 -28331623 + (CAACT)n Simple_repeat Simple_repeat 1 42 0 7 1293 421 254 126 41 chr12 92925929 92926106 -28331424 + B3A SINE B2 7 196 -20 7 1293 608 154 214 0 chr12 92926249 92926366 -28331164 + B1_Mur4 SINE Alu 2 143 -7 7 1293 231 250 43 29 chr12 92926897 92926967 -28330563 + ID4 SINE ID 2 72 -11 7 1293 25 31 0 0 chr12 92927017 92927049 -28330481 + AT_rich Low_complexity Low_complexity 1 32 0 7 1293 747 121 25 17 chr12 92927057 92927175 -28330355 + PB1D9 SINE Alu 1 119 -1 7 1293 1232 147 37 32 chr12 92927304 92927522 -28330008 + URR1B DNA MER1_type 7 225 0 7 1293 181 364 40 20 chr12 92927578 92927679 -28329851 - MIR SINE MIR -6 256 154 7 1293 1426 60 49 0 chr12 92927893 92928078 -28329452 + B2_Mm2 SINE B2 1 194 -1 7 1293 378 259 110 89 chr12 92928186 92928226 -28329304 + B3A SINE B2 1 37 -161 7 1293 1101 121 0 0 chr12 92928226 92928375 -28329155 + B1_Mur4 SINE Alu 2 150 0 7 1293 1404 69 31 16 chr12 92928377 92928569 -28328961 + B2_Mm2 SINE B2 1 195 0 7 1293 378 259 110 89 chr12 92928569 92928716 -28328814 + B3A SINE B2 38 195 -3 7 1293 504 0 0 0 chr12 92928736 92928792 -28328738 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1293 543 308 40 14 chr12 92928799 92928947 -28328583 - RSINE1 SINE B4 -4 161 10 8 1293 189 0 0 0 chr12 92929031 92929052 -28328478 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1293 408 20 0 0 chr12 92929052 92929100 -28328430 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1293 321 89 0 0 chr12 92929205 92929250 -28328280 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1293 676 251 121 49 chr12 92929346 92929472 -28328058 - Lx8 LINE L1 -257 7216 7068 8 1293 222 37 0 0 chr12 92929472 92929499 -28328031 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 8 1293 676 251 121 49 chr12 92929499 92929636 -28327894 - Lx8 LINE L1 -406 7067 6934 8 1293 865 97 6 45 chr12 92929900 92930046 -28327484 - B1_Mur4 SINE Alu 0 150 1 8 1294 189 0 0 0 chr12 92930084 92930105 -28327425 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1294 571 196 10 0 chr12 92930809 92930906 -28326624 - B1_Mur2 SINE Alu -51 98 1 8 1294 392 204 0 120 chr12 92930821 92930921 -28326609 - MT2B LTR ERVL -361 240 153 8 1294 234 203 24 48 chr12 92930955 92931038 -28326492 - L1MC5 LINE L1 -44 7917 7837 8 1294 1103 215 94 43 chr12 92931284 92931634 -28325896 + ORR1D2 LTR MaLR 3 370 0 8 1294 258 311 11 22 chr12 92931640 92931732 -28325798 + MLT1A1 LTR MaLR 318 408 0 8 1294 228 283 59 20 chr12 92931794 92931895 -28325635 + MLT1D LTR MaLR 71 175 -292 8 1294 480 241 0 1 chr12 92931968 92932075 -28325455 + MLT1D LTR MaLR 404 617 -7 8 1294 529 281 28 37 chr12 92932574 92932788 -28324742 - L1M2 LINE L1 -791 5512 5301 8 1294 655 223 7 67 chr12 92932864 92933013 -28324517 + B1F SINE Alu 1 140 -9 8 1294 721 226 20 7 chr12 92933455 92933602 -28323928 - B1_Mur1 SINE Alu 0 149 1 8 1294 1231 178 13 18 chr12 92933758 92933987 -28323543 + Lx9 LINE L1 7249 7476 -168 8 1294 332 103 17 0 chr12 92933987 92934045 -28323485 + (TATG)n Simple_repeat Simple_repeat 3 61 0 8 1294 333 242 60 38 chr12 92934045 92934164 -28323366 + Lx9 LINE L1 7517 7638 -6 8 1294 356 294 53 25 chr12 92934226 92934411 -28323119 + L1ME1 LINE L1 5795 5996 -183 8 1294 348 247 186 0 chr12 92936014 92936111 -28321419 - B4 SINE B4 0 292 178 8 1294 2652 167 67 62 chr12 92936164 92936732 -28320798 + RMER15 LTR ERVL 3 573 -2 8 1294 843 124 84 42 chr12 92937732 92937875 -28319655 + B1_Mur4 SINE Alu 2 150 0 8 1294 390 321 117 46 chr12 92938000 92938196 -28319334 + Lx8 LINE L1 7075 7284 -189 8 1294 216 86 0 0 chr12 92938517 92938552 -28318978 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 8 1294 740 139 82 62 chr12 92938579 92938725 -28318805 + B1_Mur3 SINE Alu 1 149 0 8 1294 851 252 28 9 chr12 92938878 92939090 -28318440 + B3 SINE B2 1 216 0 8 1294 192 77 0 0 chr12 92939631 92939657 -28317873 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 8 1294 395 239 122 9 chr12 92939660 92939775 -28317755 - B1F SINE Alu -14 135 9 8 1294 709 177 100 0 chr12 92939912 92940042 -28317488 + B1_Mur2 SINE Alu 2 144 -5 8 1294 1904 148 81 20 chr12 92940459 92940805 -28316725 + ORR1B2 LTR MaLR 1 367 0 8 1294 731 206 109 0 chr12 92941008 92941173 -28316357 + MLT1B LTR MaLR 1 183 -207 8 1294 1016 236 94 57 chr12 92941178 92941378 -28316152 - ORR1D2 LTR MaLR -4 366 149 8 1294 924 119 53 53 chr12 92941378 92941565 -28315965 - B2_Mm2 SINE B2 -6 189 3 8 1294 1016 236 94 57 chr12 92941565 92941661 -28315869 - ORR1D2 LTR MaLR -222 148 59 8 1294 238 256 52 72 chr12 92941668 92941765 -28315765 - ORR1C1 LTR MaLR -14 364 270 8 1294 603 310 58 15 chr12 92941864 92942070 -28315460 - B3 SINE B2 -1 215 1 8 1294 405 58 0 0 chr12 92942436 92942488 -28315042 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1294 615 179 92 17 chr12 92942848 92942967 -28314563 - B1_Mur4 SINE Alu -22 128 1 8 1294 459 206 108 31 chr12 92943034 92943164 -28314366 - MER3 DNA MER1_type -18 191 52 8 1294 390 340 34 69 chr12 92943625 92943685 -28313845 - Charlie4a DNA MER1_type -3 505 446 8 1294 524 229 0 0 chr12 92943685 92943790 -28313740 + PB1D9 SINE Alu 2 106 -14 8 1294 390 340 34 69 chr12 92943790 92943810 -28313720 - Charlie4a DNA MER1_type -63 445 427 8 1294 2430 78 16 0 chr12 92943810 92944132 -28313398 - ORR1A2 LTR MaLR 0 327 1 8 1294 390 340 34 69 chr12 92944132 92944341 -28313189 - Charlie4a DNA MER1_type -82 426 226 8 1294 1503 258 21 12 chr12 92944349 92944675 -28312855 + MTEa LTR MaLR 51 379 0 8 1294 293 335 46 56 chr12 92944675 92944840 -28312690 - Charlie4a DNA MER1_type -317 191 29 8 1294 221 180 20 0 chr12 92946653 92946703 -28310827 + CT-rich Low_complexity Low_complexity 2 52 0 8 1294 189 107 0 0 chr12 92946703 92946731 -28310799 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 8 1294 1217 202 71 22 chr12 92946743 92947089 -28310441 - Lx2B LINE L1 -42 6934 6557 8 1294 209 292 44 44 chr12 92947128 92947196 -28310334 + MIRb SINE MIR 201 268 0 8 1294 396 0 0 0 chr12 92947681 92947725 -28309805 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1294 2828 64 0 8 chr12 92948801 92949161 -28308369 - L1Md_A LINE L1 0 6582 6226 8 1294 1761 179 76 31 chr12 92949825 92950145 -28307385 + RMER10B LTR ERVL 1 326 -72 8 1294 207 0 0 0 chr12 92950145 92950168 -28307362 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 8 1294 1761 179 76 31 chr12 92950168 92950228 -28307302 + RMER10B LTR ERVL 327 397 -1 8 1294 225 336 38 9 chr12 92950451 92950556 -28306974 - MIRc SINE MIR -60 208 101 8 1294 257 307 40 0 chr12 92950556 92950631 -28306899 + ID4 SINE ID 2 79 -4 8 1294 595 265 114 105 chr12 92950672 92951014 -28306516 + ORR1E LTR MaLR 9 353 -6 8 1294 670 275 126 41 chr12 92952739 92952764 -28304766 + B4A SINE B4 1 25 -267 8 1294 946 179 358 32 chr12 92952764 92953046 -28304484 + ORR1D1 LTR MaLR 1 374 0 8 1294 670 275 126 41 chr12 92953046 92953289 -28304241 + B4A SINE B4 26 292 0 8 1294 1387 108 0 0 chr12 92953590 92953784 -28303746 + B2_Mm2 SINE B2 2 195 0 8 1294 627 24 12 12 chr12 92953787 92953872 -28303658 + B1_Mus2 SINE Alu 63 147 0 8 1294 381 43 0 0 chr12 92954594 92954641 -28302889 + (TTTCC)n Simple_repeat Simple_repeat 3 49 0 8 1294 289 266 175 45 chr12 92954643 92954745 -28302785 + L2a LINE L2 3205 3319 -107 8 1294 5033 51 3 3 chr12 92954745 92955370 -28302160 - L1_Mus2 LINE L1 0 6566 5942 8 1294 289 266 175 45 chr12 92955370 92955444 -28302086 + L2a LINE L2 3320 3403 -23 8 1294 317 344 96 62 chr12 92956445 92956767 -28300763 + L1ME3B LINE L1 541 873 -5263 8 1294 3369 53 33 2 chr12 92956787 92957206 -28300324 + L1Md_F2 LINE L1 6141 6572 -10 8 1294 1210 259 98 9 chr12 92957629 92957978 -28299552 - MTD LTR MaLR -15 404 33 8 1294 1109 123 0 6 chr12 92958216 92958396 -28299134 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1294 924 177 0 0 chr12 92958425 92958600 -28298930 + (CA)n Simple_repeat Simple_repeat 2 176 0 8 1294 374 222 24 47 chr12 92958713 92958798 -28298732 + ID SINE ID 2 84 -140 8 1294 456 359 73 38 chr12 92958807 92959123 -28298407 + L1ME3B LINE L1 3416 3742 -2404 8 1294 243 253 0 62 chr12 92959195 92959275 -28298255 - MER106B DNA MER1_type 0 1059 985 8 1294 910 230 19 14 chr12 92959337 92959544 -28297986 - B3 SINE B2 -7 209 2 8 1294 708 285 5 0 chr12 92959617 92959803 -28297727 - B3A SINE B2 -11 187 1 8 1294 1175 296 72 111 chr12 92959837 92960091 -28297439 - L1MD2 LINE L1 -126 6233 5980 8 1294 3439 33 5 0 chr12 92960091 92960485 -28297045 + MTA_Mm LTR MaLR 1 396 0 8 1294 1175 296 72 111 chr12 92960485 92961003 -28296527 - L1MD2 LINE L1 -380 5979 5478 8 1294 401 0 20 0 chr12 92961003 92961052 -28296478 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1294 1175 296 72 111 chr12 92961052 92961086 -28296444 - L1MD2 LINE L1 -882 5477 5443 8 1294 349 276 141 66 chr12 92961086 92961342 -28296188 - B4 SINE B4 -14 278 4 8 1294 1175 296 72 111 chr12 92961342 92961532 -28295998 - L1MD2 LINE L1 -917 5442 5274 8 1294 792 218 70 38 chr12 92961534 92961720 -28295810 - B3 SINE B2 -3 192 1 8 1294 320 24 119 0 chr12 92961721 92961763 -28295767 - HAL1-3A_ME LINE L1 -833 2025 1979 8 1294 198 0 0 0 chr12 92961763 92961785 -28295745 + (GA)n Simple_repeat Simple_repeat 2 23 0 8 1294 438 20 0 0 chr12 92961784 92961835 -28295695 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1294 270 0 0 0 chr12 92961834 92961864 -28295666 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 1294 367 291 103 0 chr12 92961864 92961981 -28295549 - RSINE1 SINE B4 -1 164 36 8 1294 319 392 39 43 chr12 92961984 92962216 -28295314 + L1ME3B LINE L1 4909 5139 -1007 8 1294 327 316 34 68 chr12 92962290 92962436 -28295094 + L1ME3B LINE L1 5296 5436 -804 8 1294 345 281 17 42 chr12 92962635 92962754 -28294776 + ID_B1 SINE B4 7 122 -102 8 1294 832 113 15 8 chr12 92962802 92962936 -28294594 - RLTR25A LTR ERVK 0 1103 969 8 1294 1361 198 17 50 chr12 92962939 92963237 -28294293 - RLTR25A LTR ERVK -815 288 1 8 1294 305 318 47 0 chr12 92963299 92963406 -28294124 + Lx8 LINE L1 6827 6938 -535 8 1294 2227 113 50 125 chr12 92963482 92963937 -28293593 + RLTR23 LTR ERV1 10 430 0 8 1294 439 300 104 32 chr12 92963937 92964188 -28293342 + Lx7 LINE L1 7044 7312 -384 8 1294 937 146 84 27 chr12 92964195 92964430 -28293100 - RMER17C LTR ERVK -384 425 1 8 1294 189 74 0 0 chr12 92964443 92964470 -28293060 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 8 1294 263 274 26 78 chr12 92964511 92964626 -28292904 + RMER1C Other Other 1225 1333 -9 8 1294 257 307 66 13 chr12 92964628 92964704 -28292826 + ID_B1 SINE B4 143 222 -2 8 1294 330 289 63 107 chr12 92964926 92965178 -28292352 + L1ME3B LINE L1 5887 6127 -113 8 1294 201 341 254 12 chr12 92965853 92966191 -28291339 + L2a LINE L2 2389 2808 -611 8 1294 323 306 94 75 chr12 92966234 92966552 -28290978 - Lx8 LINE L1 -16 7457 7134 8 1294 186 269 102 51 chr12 92966775 92966912 -28290618 + L2a LINE L2 3051 3194 -232 8 1294 1871 150 154 6 chr12 92967412 92967755 -28289775 - ORR1B1 LTR MaLR 0 394 1 8 1294 750 183 15 22 chr12 92968051 92968185 -28289345 + B1_Mus2 SINE Alu 2 134 -13 8 1294 216 299 26 0 chr12 92968323 92968400 -28289130 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 8 1294 204 67 0 0 chr12 92968414 92968444 -28289086 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1294 719 158 6 18 chr12 92968533 92968701 -28288829 + GA-rich Low_complexity Low_complexity 2 167 0 8 1294 264 122 0 0 chr12 92968746 92968787 -28288743 + (TGG)n Simple_repeat Simple_repeat 1 41 0 8 1294 841 204 88 10 chr12 92969146 92969339 -28288191 + ID_B1 SINE B4 3 210 -14 8 1294 306 98 0 0 chr12 92969343 92969394 -28288136 + (CAATG)n Simple_repeat Simple_repeat 2 52 0 8 1294 926 197 42 42 chr12 92970689 92970901 -28286629 - B3 SINE B2 -1 215 4 8 1294 883 212 100 6 chr12 92972279 92972459 -28285071 - B3 SINE B2 -19 197 1 8 1294 332 308 53 84 chr12 92972506 92972637 -28284893 + RSINE1 SINE B4 4 130 -35 9 1294 742 309 130 59 chr12 92973450 92973911 -28283619 - MLT1D LTR MaLR -6 499 6 9 1294 966 123 14 0 chr12 92974416 92974554 -28282976 - B1_Mur4 SINE Alu -9 141 2 9 1294 335 313 30 8 chr12 92974958 92975090 -28282440 + MIR SINE MIR 66 200 -62 9 1294 435 156 171 114 chr12 92975146 92975186 -28282344 + B1_Mur3 SINE Alu 1 25 -123 9 1294 2168 115 132 0 chr12 92975186 92975534 -28281996 + ORR1B1 LTR MaLR 1 394 0 9 1294 435 142 202 50 chr12 92975534 92975637 -28281893 + B1_Mur3 SINE Alu 24 145 -4 9 1294 642 235 67 50 chr12 92975610 92975789 -28281741 + ID_B1 SINE B4 43 224 0 9 1294 868 277 105 67 chr12 92975832 92976176 -28281354 - MLT1A0 LTR MaLR -8 357 1 9 1294 890 223 19 10 chr12 92976457 92976665 -28280865 - B3 SINE B2 -5 211 2 9 1294 802 259 133 53 chr12 92976748 92977087 -28280443 - ORR1D2 LTR MaLR 0 370 5 9 1294 329 291 25 0 chr12 92977089 92977168 -28280362 - PB1 SINE Alu -15 112 32 9 1294 784 312 77 62 chr12 92977442 92977535 -28279995 + MLT1D LTR MaLR 28 116 -389 9 1294 2157 160 8 21 chr12 92977535 92977918 -28279612 + ORR1C1 LTR MaLR 1 378 0 9 1294 784 299 76 68 chr12 92977918 92978238 -28279292 + MLT1D LTR MaLR 117 485 -20 9 1294 405 303 36 59 chr12 92979571 92979819 -28277711 - B4 SINE B4 -8 284 2 9 1294 195 42 0 0 chr12 92979991 92980015 -28277515 + (CG)n Simple_repeat Simple_repeat 2 25 0 9 1294 288 0 0 0 chr12 92980015 92980046 -28277484 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1294 351 0 0 0 chr12 92980160 92980199 -28277331 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1294 195 45 0 83 chr12 92980204 92980252 -28277278 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1294 255 279 0 0 chr12 92980272 92980358 -28277172 + A-rich Low_complexity Low_complexity 1 86 0 9 1294 418 313 90 43 chr12 92980402 92980679 -28276851 - B4A SINE B4 0 292 3 9 1294 254 192 206 0 chr12 92980716 92980789 -28276741 - MER33 DNA MER1_type -235 89 2 9 1294 570 242 24 0 chr12 92981120 92981244 -28276286 + B1_Mur2 SINE Alu 2 128 -21 9 1294 805 199 7 7 chr12 92981266 92981413 -28276117 + B1_Mus2 SINE Alu 1 147 0 9 1294 813 275 92 8 chr12 92981454 92981703 -28275827 + B4A SINE B4 4 273 -19 9 1294 187 427 21 10 chr12 92981758 92981855 -28275675 - MIR SINE MIR -157 105 8 9 1294 365 246 169 0 chr12 92983399 92983529 -28274001 - ID_B1 SINE B4 -2 222 71 9 1294 1210 175 9 44 chr12 92983516 92983743 -28273787 + URR1A DNA MER1_type 8 226 0 9 1294 222 288 15 0 chr12 92983745 92983811 -28273719 - B4 SINE B4 -209 83 17 9 1294 342 0 0 0 chr12 92984836 92984874 -28272656 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1294 341 322 11 0 chr12 92984875 92984962 -28272568 - RSINE1 SINE B4 -75 90 3 9 1294 2026 147 100 18 chr12 92984979 92985270 -28272260 - MTC LTR MaLR 0 421 97 9 1294 3304 60 0 56 chr12 92985270 92985733 -28271797 - L1Md_F2 LINE L1 0 6582 6146 9 1294 2026 147 100 18 chr12 92985733 92985830 -28271700 - MTC LTR MaLR -325 96 1 9 1294 936 216 58 5 chr12 92985999 92986190 -28271340 + ID_B1 SINE B4 24 224 0 9 1294 850 122 92 0 chr12 92987345 92987476 -28270054 + B1_Mur4 SINE Alu 1 143 -7 9 1294 207 0 0 0 chr12 92987476 92987499 -28270031 + (GA)n Simple_repeat Simple_repeat 2 24 0 9 1294 1358 165 0 18 chr12 92988723 92988951 -28268579 - URR1B DNA MER1_type 0 225 2 9 1294 314 294 83 16 chr12 92989344 92989465 -28268065 + MLT1N2 LTR MaLR 427 555 -7 9 1294 1270 20 0 13 chr12 92989701 92989850 -28267680 + B1_Mus2 SINE Alu 1 147 0 9 1294 1455 173 38 29 chr12 92989865 92990181 -28267349 - Lx7 LINE L1 -7 7689 7371 9 1294 343 284 77 73 chr12 92990389 92990682 -28266848 + MTEb LTR MaLR 40 372 -7 9 1294 1175 15 0 0 chr12 92992140 92992273 -28265257 - B1_Mus1 SINE Alu -11 137 5 9 1294 304 305 91 40 chr12 92992358 92992556 -28264974 + MLT1E3 LTR MaLR 1 208 -416 9 1294 307 281 92 21 chr12 92992545 92992687 -28264843 + MLT1E3 LTR MaLR 364 515 -109 9 1294 226 241 0 33 chr12 92993382 92993442 -28264088 + CT-rich Low_complexity Low_complexity 4 61 0 9 1294 259 289 11 46 chr12 92993444 92993473 -28264057 - ID_B1 SINE B4 -55 169 86 9 1294 273 196 0 35 chr12 92993473 92993531 -28263999 - PB1D7 SINE Alu -60 60 5 9 1294 267 301 103 37 chr12 92994361 92994519 -28263011 - MIR SINE MIR -65 203 31 9 1294 722 113 0 9 chr12 92994757 92994873 -28262657 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 9 1294 369 138 25 12 chr12 92995196 92995277 -28262253 + GA-rich Low_complexity Low_complexity 4 85 0 9 1294 186 43 0 0 chr12 92995665 92995688 -28261842 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 9 1294 224 167 0 0 chr12 92995698 92995740 -28261790 - PB1D10 SINE Alu 0 117 76 9 1294 216 0 0 0 chr12 92996140 92996164 -28261366 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1294 1176 74 0 0 chr12 92996929 92997077 -28260453 + B1_Mus1 SINE Alu 1 148 0 9 1294 207 0 0 0 chr12 92997077 92997100 -28260430 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1294 3810 123 132 26 chr12 92997375 92998059 -28259471 - RMER6A LTR ERVK 0 756 1 9 1294 243 0 0 0 chr12 92998213 92998240 -28259290 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1294 867 208 0 0 chr12 92998584 92998728 -28258802 - RSINE1 SINE B4 -21 144 1 9 1294 21 0 0 0 chr12 92999063 92999084 -28258446 + AT_rich Low_complexity Low_complexity 1 21 0 9 1294 344 273 101 8 chr12 92999317 92999446 -28258084 - MIRc SINE MIR -54 214 74 9 1294 863 171 190 16 chr12 92999551 92999735 -28257795 - B3 SINE B2 0 216 1 9 1294 24 0 0 0 chr12 92999763 92999787 -28257743 + AT_rich Low_complexity Low_complexity 1 24 0 9 1294 433 331 114 16 chr12 93000294 93000540 -28256990 - LTR16D LTR ERVL -295 356 87 1 1294 282 56 0 0 chr12 93002332 93002368 -28255162 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1294 933 97 7 52 chr12 93002368 93002521 -28255009 - B1_Mur3 SINE Alu 0 149 4 3 1294 393 22 0 0 chr12 93002996 93003042 -28254488 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1294 390 57 0 0 chr12 93003498 93003551 -28253979 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1294 360 272 87 97 chr12 93004211 93004500 -28253030 + B4A SINE B4 1 286 -6 6 1294 204 232 34 79 chr12 93005033 93005122 -28252408 - MIRc SINE MIR -101 167 83 7 1294 1988 159 5 64 chr12 93005382 93005779 -28251751 - ORR1C2 LTR MaLR -3 376 12 8 1294 584 326 22 11 chr12 93006012 93006195 -28251335 + B4A SINE B4 66 250 -42 9 1294 207 0 0 0 chr12 93006217 93006240 -28251290 + (GGA)n Simple_repeat Simple_repeat 3 25 0 1 1294 363 167 0 0 chr12 93006448 93006538 -28250992 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 1294 310 154 0 37 chr12 93006545 93006599 -28250931 + HAL1-3A_ME LINE L1 1974 2025 -833 1 1294 184 207 117 33 chr12 93006610 93006670 -28250860 + L2 LINE L2 2528 2592 -827 1 1294 299 284 67 101 chr12 93006902 93007118 -28250412 - MIR SINE MIR -30 232 22 1 1294 564 239 0 0 chr12 93007687 93007829 -28249701 + GA-rich Low_complexity Low_complexity 3 144 0 1 1294 192 152 0 0 chr12 93007860 93007893 -28249637 + GA-rich Low_complexity Low_complexity 28 60 0 1 1294 207 0 0 0 chr12 93008286 93008309 -28249221 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1294 4351 160 79 50 chr12 93008595 93009455 -28248075 - RMER19B LTR ERVK -12 890 6 1 1294 6310 93 53 23 chr12 93009456 93010382 -28247148 + RMER17B LTR ERVK 1 954 -4 1 1294 630 230 16 93 chr12 93010398 93010580 -28246950 + B4A SINE B4 7 174 -118 1 1294 311 206 103 0 chr12 93010637 93010705 -28246825 + B4 SINE B4 201 275 -17 1 1294 243 61 0 0 chr12 93010713 93010746 -28246784 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1294 272 179 0 29 chr12 93010762 93010831 -28246699 + GA-rich Low_complexity Low_complexity 2 68 0 2 1294 216 158 0 0 chr12 93011032 93011070 -28246460 + T-rich Low_complexity Low_complexity 1 38 0 2 1294 1094 63 28 0 chr12 93011070 93011213 -28246317 - B1_Mus2 SINE Alu 0 147 1 2 1294 355 280 17 8 chr12 93013790 93013909 -28243621 + PB1D7 SINE Alu 1 120 0 2 1294 423 288 37 73 chr12 93014059 93014250 -28243280 + MER5A DNA MER1_type 4 187 -2 2 1294 401 167 0 26 chr12 93014651 93014768 -28242762 + (CA)n Simple_repeat Simple_repeat 1 114 0 2 1294 279 0 0 0 chr12 93014873 93014904 -28242626 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1294 217 312 185 15 chr12 93016540 93016670 -28240860 - MIR SINE MIR -2 260 109 2 1294 423 0 0 0 chr12 93016790 93016837 -28240693 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1294 21 0 0 0 chr12 93017371 93017392 -28240138 + GC_rich Low_complexity Low_complexity 1 21 0 3 1294 337 253 66 0 chr12 93019690 93019781 -28237749 + L1MB5 LINE L1 5540 5636 -542 3 1294 564 189 80 9 chr12 93019793 93019905 -28237625 + B1_Mur1 SINE Alu 12 131 -18 3 1294 836 286 102 19 chr12 93019976 93020339 -28237191 + L1MB5 LINE L1 5655 6047 -127 3 1294 291 268 103 48 chr12 93020641 93020664 -28236866 + YREP_Mm Unknown Unknown 151 260 -1552 3 1294 536 271 53 15 chr12 93020664 93020795 -28236735 - ID_B1 SINE B4 -5 219 84 3 1294 291 268 103 48 chr12 93020795 93020806 -28236724 + YREP_Mm Unknown Unknown 261 324 -1488 3 1294 251 294 63 18 chr12 93020797 93020908 -28236622 + MER3 DNA MER1_type 35 150 -59 3 1294 875 130 0 0 chr12 93020899 93021022 -28236508 - B1_Mur4 SINE Alu -1 149 27 3 1294 746 227 0 0 chr12 93021130 93021258 -28236272 + B1_Mur1 SINE Alu 1 128 -21 3 1294 231 36 0 0 chr12 93021263 93021291 -28236239 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 3 1294 1363 88 10 35 chr12 93021559 93021759 -28235771 + B2_Mm2 SINE B2 1 195 0 3 1294 475 294 56 0 chr12 93021776 93021919 -28235611 + B3A SINE B2 12 162 -36 4 1294 425 310 0 0 chr12 93022156 93022256 -28235274 - RSINE1 SINE B4 -36 129 30 4 1294 354 176 162 0 chr12 93022841 93022909 -28234621 + ID2 SINE ID 5 83 0 4 1294 223 327 123 29 chr12 93023384 93023554 -28233976 + MIRb SINE MIR 35 220 -48 4 1294 234 0 0 0 chr12 93023587 93023613 -28233917 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 4 1294 243 0 0 0 chr12 93023622 93023649 -28233881 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1294 418 172 394 0 chr12 93023666 93023765 -28233765 - B1_Mur2 SINE Alu 0 148 10 4 1294 279 336 43 36 chr12 93024485 93024624 -28232906 - MER5A1 DNA MER1_type -11 155 16 4 1294 224 289 50 30 chr12 93024631 93024731 -28232799 - MER5B DNA MER1_type -9 169 68 4 1294 188 173 0 37 chr12 93025296 93025350 -28232180 + C-rich Low_complexity Low_complexity 4 55 0 4 1294 246 267 26 39 chr12 93025843 93025921 -28231609 - ID SINE ID -145 79 3 5 1294 2005 244 37 21 chr12 93026445 93026960 -28230570 - MT2A LTR ERVL -8 525 3 5 1294 1395 79 21 11 chr12 93026961 93027152 -28230378 + B2_Mm2 SINE B2 2 194 -1 5 1294 700 291 91 42 chr12 93027187 93027474 -28230056 + MLT1A0 LTR MaLR 65 365 0 5 1294 498 280 39 16 chr12 93028104 93028231 -28229299 + RSINE1 SINE B4 1 130 -35 5 1294 594 0 0 0 chr12 93028255 93028321 -28229209 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1294 239 271 83 28 chr12 93028853 93028925 -28228605 + MTEa LTR MaLR 19 94 -285 5 1294 420 300 198 54 chr12 93028956 93029270 -28228260 + MT2A LTR ERVL 171 529 -4 5 1294 850 220 15 75 chr12 93029866 93030052 -28227478 + B3A SINE B2 10 185 -13 5 1294 464 60 30 0 chr12 93030052 93030119 -28227411 + (CATA)n Simple_repeat Simple_repeat 4 72 0 5 1294 850 220 15 75 chr12 93030119 93030133 -28227397 + B3A SINE B2 186 198 0 5 1294 1986 201 21 31 chr12 93031746 93032166 -28225364 + MTD LTR MaLR 4 419 0 6 1294 1531 273 73 128 chr12 93032216 93033074 -28224456 + RLTR22_Mur LTR ERVK 1 811 -1037 6 1294 1115 253 179 108 chr12 93033087 93033317 -28224213 + RLTR22_Mur LTR ERVK 739 889 -433 6 1294 497 88 12 0 chr12 93033317 93033397 -28224133 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1294 1115 210 227 140 chr12 93033397 93033803 -28223727 + RLTR22_Mur LTR ERVK 890 1322 0 6 1294 1149 68 0 22 chr12 93034204 93034384 -28223146 + (TTCC)n Simple_repeat Simple_repeat 4 179 0 6 1294 229 222 37 0 chr12 93034384 93034438 -28223092 + CT-rich Low_complexity Low_complexity 2 57 0 6 1294 269 109 22 0 chr12 93034439 93034485 -28223045 + (TCC)n Simple_repeat Simple_repeat 3 49 0 6 1294 830 186 0 14 chr12 93034515 93034662 -28222868 + B1_Mur4 SINE Alu 1 145 -5 6 1294 1079 198 41 0 chr12 93034813 93035010 -28222520 + B3 SINE B2 2 206 -10 6 1294 287 154 19 37 chr12 93035087 93035141 -28222389 + RSINE1 SINE B4 81 133 -32 6 1294 245 29 0 29 chr12 93035835 93035870 -28221660 + (TCTCCC)n Simple_repeat Simple_repeat 3 36 0 6 1294 713 318 86 43 chr12 93035887 93036085 -28221445 - B4A SINE B4 0 292 95 7 1294 1702 21 0 0 chr12 93036085 93036276 -28221254 - B2_Mm1a SINE B2 -2 191 1 7 1294 713 318 86 43 chr12 93036276 93036356 -28221174 - B4A SINE B4 -198 94 2 7 1294 868 159 0 7 chr12 93036598 93036738 -28220792 + B1_Mur4 SINE Alu 5 143 -7 7 1294 186 103 0 0 chr12 93036738 93036767 -28220763 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 7 1294 2517 67 0 63 chr12 93036782 93037131 -28220399 + ORR1A2 LTR MaLR 1 327 0 7 1294 208 0 62 0 chr12 93037808 93037840 -28219690 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1294 26 30 0 0 chr12 93037856 93037889 -28219641 + AT_rich Low_complexity Low_complexity 1 33 0 7 1294 235 72 0 45 chr12 93037939 93037983 -28219547 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 7 1294 651 272 63 32 chr12 93038350 93038540 -28218990 + RMER30 DNA MER1_type 7 202 0 7 1294 246 316 40 71 chr12 93039470 93039596 -28217934 - L2b LINE L2 -36 3339 3218 7 1294 1231 55 0 0 chr12 93040408 93040554 -28216976 - B1_Mus2 SINE Alu 0 147 2 8 1294 480 237 113 9 chr12 93041102 93041217 -28216313 - URR1B DNA MER1_type -98 127 1 8 1294 606 63 0 0 chr12 93041605 93041684 -28215846 + (TG)n Simple_repeat Simple_repeat 1 79 0 8 1294 180 0 0 0 chr12 93042356 93042376 -28215154 + (TGG)n Simple_repeat Simple_repeat 2 21 0 8 1294 1580 60 0 0 chr12 93042436 93042635 -28214895 + L1_Mus1 LINE L1 6368 6566 -1 8 1294 642 145 179 0 chr12 93043011 93043128 -28214402 - B1_Mur3 SINE Alu -7 142 5 8 1294 204 67 0 0 chr12 93049193 93049223 -28208307 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1294 225 325 35 11 chr12 93051225 93051312 -28206218 + Charlie2a DNA MER1_type 645 733 -2128 8 1294 403 242 133 0 chr12 93051551 93051671 -28205859 - ID_B1 SINE B4 -5 219 84 8 1294 201 272 35 120 chr12 93053716 93053858 -28203672 - MIR SINE MIR -26 236 107 8 1294 255 133 0 0 chr12 93056937 93056982 -28200548 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1294 276 294 96 21 chr12 93057044 93057138 -28200392 - RSINE1 SINE B4 0 165 65 9 1294 1063 230 66 40 chr12 93057343 93057615 -28199915 + B4 SINE B4 4 282 -10 9 1294 381 123 14 0 chr12 93058673 93058746 -28198784 + L1_Mus3 LINE L1 6565 6638 0 9 1294 195 255 39 0 chr12 93060128 93060179 -28197351 + L2a LINE L2 3342 3394 -32 9 1295 614 280 28 113 chr12 93061200 93061413 -28196117 - B3A SINE B2 0 195 1 9 1295 840 210 5 32 chr12 93061526 93061713 -28195817 + B3A SINE B2 1 182 -16 9 1295 390 154 0 0 chr12 93061718 93061796 -28195734 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1295 437 325 78 24 chr12 93062302 93062557 -28194973 - B4A SINE B4 -21 271 3 9 1295 655 179 0 14 chr12 93067101 93067248 -28190282 + (TG)n Simple_repeat Simple_repeat 2 146 0 9 1295 669 224 53 77 chr12 93067251 93067459 -28190071 - B3 SINE B2 -13 203 1 1 1295 414 0 0 0 chr12 93067908 93067954 -28189576 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1295 288 269 15 0 chr12 93067966 93068033 -28189497 - ID SINE ID -155 69 2 1 1295 578 285 11 27 chr12 93068085 93068269 -28189261 + B3A SINE B2 2 182 -16 1 1295 414 262 112 0 chr12 93068612 93068772 -28188758 + B3A SINE B2 5 182 -16 1 1295 261 0 0 0 chr12 93068772 93068801 -28188729 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1295 1043 192 9 38 chr12 93068857 93069068 -28188462 + B3 SINE B2 1 205 -11 1 1295 906 211 56 28 chr12 93070602 93070817 -28186713 - ID_B1 SINE B4 0 224 4 1 1295 1341 93 103 0 chr12 93072636 93072840 -28184690 + URR1A DNA MER1_type 2 226 0 1 1295 214 106 43 0 chr12 93072864 93072911 -28184619 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 1 1295 734 279 93 108 chr12 93072960 93073434 -28184096 + RMER5 LTR ERV1 68 534 0 1 1295 601 241 37 19 chr12 93073861 93074022 -28183508 + MER68 LTR ERVL 155 318 -245 1 1295 186 43 0 0 chr12 93074393 93074416 -28183114 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1295 319 227 0 29 chr12 93074467 93074535 -28182995 - B3A SINE B2 -86 112 47 1 1295 290 237 0 0 chr12 93074619 93074678 -28182852 + MER68 LTR ERVL 497 555 -8 1 1295 536 312 61 37 chr12 93075188 93075514 -28182016 + MER68-int LTR ERVL 574 907 -2083 1 1295 311 218 58 0 chr12 93075548 93075635 -28181895 + MER68-int LTR ERVL 955 1046 -1944 1 1295 523 162 17 43 chr12 93075650 93075766 -28181764 - PB1D9 SINE Alu -6 114 2 1 1295 1346 298 112 19 chr12 93075769 93076449 -28181081 + MER68-int LTR ERVL 1040 1782 -1208 1 1295 545 271 84 34 chr12 93076467 93076704 -28180826 + MER68-int LTR ERVL 1855 2103 -887 1 1295 1016 239 233 25 chr12 93076840 93077244 -28180286 + MER68-int LTR ERVL 2328 2815 -175 1 1295 263 325 0 24 chr12 93077320 93077405 -28180125 + MER68 LTR ERVL 466 548 -15 1 1295 971 48 61 0 chr12 93077573 93077803 -28179727 + (CCTG)n Simple_repeat Simple_repeat 1 244 0 1 1295 264 295 132 9 chr12 93078542 93078648 -28178882 + LTR80B LTR ERVL 31 149 -435 1 1295 1400 276 60 34 chr12 93078711 93079210 -28178320 + MER21B LTR ERV1 272 783 -80 1 1295 795 218 13 13 chr12 93080783 93080932 -28176598 + B1_Mur1 SINE Alu 1 149 0 1 1295 464 259 26 0 chr12 93080951 93081067 -28176463 + ID_B1 SINE B4 86 204 -20 1 1295 291 47 449 0 chr12 93081276 93081363 -28176167 - B2_Mm2 SINE B2 0 195 70 1 1295 1301 91 11 0 chr12 93081385 93081561 -28175969 - B2_Mm1t SINE B2 -14 179 2 1 1295 465 259 121 24 chr12 93082333 93082499 -28175031 - B3A SINE B2 -16 182 1 1 1295 321 207 0 0 chr12 93082523 93082610 -28174920 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 1295 717 225 126 22 chr12 93082610 93082792 -28174738 + B3 SINE B2 10 210 -6 1 1295 891 125 13 40 chr12 93082842 93082975 -28174555 + B1_Mur4 SINE Alu 5 137 -13 1 1295 288 0 0 0 chr12 93082975 93083007 -28174523 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1 1295 891 125 13 40 chr12 93083007 93083023 -28174507 + B1_Mur4 SINE Alu 138 150 0 1 1295 261 0 0 0 chr12 93085047 93085076 -28172454 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1295 263 236 28 0 chr12 93087491 93087563 -28169967 + (CCG)n Simple_repeat Simple_repeat 3 76 0 1 1295 23 33 0 0 chr12 93088116 93088146 -28169384 + AT_rich Low_complexity Low_complexity 1 30 0 1 1295 594 281 26 128 chr12 93088794 93089067 -28168463 - B4A SINE B4 0 292 48 1 1295 231 177 0 0 chr12 93089636 93089698 -28167832 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1295 4029 230 60 0 chr12 93089725 93090535 -28166995 + RMER1A Other Other 147 1005 -25 1 1295 2206 121 6 14 chr12 93090542 93090893 -28166637 + MTC LTR MaLR 67 414 -7 1 1295 252 0 0 0 chr12 93091112 93091140 -28166390 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1295 204 176 0 0 chr12 93091479 93091500 -28166030 + T-rich Low_complexity Low_complexity 31 51 0 1 1295 1352 81 47 21 chr12 93091500 93091690 -28165840 - B2_Mm2 SINE B2 0 195 1 1 1295 204 176 0 0 chr12 93091690 93091719 -28165811 + T-rich Low_complexity Low_complexity 2 30 0 1 1295 200 175 0 48 chr12 93093802 93093844 -28163686 + CT-rich Low_complexity Low_complexity 1 40 0 1 1295 227 31 31 0 chr12 93094123 93094155 -28163375 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1295 2875 157 7 33 chr12 93094493 93095035 -28162495 - RLTR11A LTR ERVK 0 528 1 1 1295 476 263 0 0 chr12 93095184 93095283 -28162247 - MER90a LTR ERV1 0 614 516 1 1295 1522 172 72 41 chr12 93095283 93095357 -28162173 - ORR1D1 LTR MaLR 0 374 306 1 1295 2333 190 71 22 chr12 93095357 93095895 -28161635 + RLTR12A LTR ERVK 1 564 -4 1 1295 1522 172 72 41 chr12 93095895 93096016 -28161514 - ORR1D1 LTR MaLR -69 305 177 1 1295 504 0 0 0 chr12 93096016 93096072 -28161458 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1295 1522 172 72 41 chr12 93096072 93096238 -28161292 - ORR1D1 LTR MaLR -198 176 3 1 1295 303 309 110 25 chr12 93096238 93096472 -28161058 - MER90a LTR ERV1 -104 510 257 1 1295 1635 249 100 25 chr12 93096567 93097078 -28160452 - RMER15 LTR ERVL 0 575 27 1 1295 289 260 51 72 chr12 93097130 93097274 -28160256 - MER90a LTR ERV1 -432 182 2 1 1295 441 326 94 37 chr12 93097306 93097688 -28159842 - L2a LINE L2 -60 3366 2963 1 1295 403 318 109 34 chr12 93098201 93098468 -28159062 - L1MC4 LINE L1 -160 7882 7596 1 1295 402 242 155 42 chr12 93098548 93098716 -28158814 - Lx8 LINE L1 -17 7456 7270 1 1295 326 281 84 84 chr12 93098714 93098928 -28158602 - L1MC4 LINE L1 -341 7541 7328 1 1295 298 268 215 32 chr12 93098933 93099091 -28158439 + ORR1E LTR MaLR 6 192 -167 1 1295 386 197 0 0 chr12 93099210 93099281 -28158249 - ORR1D1 LTR MaLR 0 374 304 1 1295 4187 255 37 35 chr12 93099281 93100413 -28157117 + Lx7 LINE L1 6227 7361 -335 1 1295 29 28 0 0 chr12 93100545 93100581 -28156949 + AT_rich Low_complexity Low_complexity 1 36 0 1 1295 948 210 74 5 chr12 93100609 93100824 -28156706 - ORR1D1 LTR MaLR -144 230 1 1 1295 287 224 15 0 chr12 93101018 93101085 -28156445 - L1MC4 LINE L1 -856 7186 7119 1 1295 435 38 0 0 chr12 93101097 93101150 -28156380 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1295 2928 298 104 16 chr12 93101254 93102415 -28155115 - Lx8 LINE L1 -6 7467 6204 1 1295 211 73 73 0 chr12 93102417 93102458 -28155072 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 1 1295 2077 258 102 39 chr12 93102482 93102795 -28154735 - L1_Mur3 LINE L1 -593 5287 4945 1 1295 288 0 0 0 chr12 93102795 93102827 -28154703 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1295 2077 258 102 39 chr12 93102827 93103333 -28154197 - L1_Mur3 LINE L1 -936 4944 4416 1 1295 2894 146 32 12 chr12 93103336 93103842 -28153688 + RMER20A LTR ERVK 1 516 0 1 1295 2756 217 42 10 chr12 93103844 93104532 -28152998 - L1_Mur3 LINE L1 -1451 4429 3720 1 1295 1344 98 0 49 chr12 93104746 93104951 -28152579 - B2_Mm2 SINE B2 0 195 1 1 1295 270 0 0 0 chr12 93106296 93106326 -28151204 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1295 493 206 49 78 chr12 93106378 93106520 -28151010 - B1_Mur1 SINE Alu -11 138 1 1 1295 988 207 250 22 chr12 93106525 93106849 -28150681 + RLTR20A2 LTR ERVK 1 398 -136 1 1295 642 13 0 0 chr12 93106850 93106925 -28150605 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 1 1295 293 164 230 14 chr12 93106925 93106999 -28150531 + RLTR20A2 LTR ERVK 452 541 0 1 1295 1066 37 0 0 chr12 93107059 93107194 -28150336 - B1_Mm SINE Alu 0 147 13 1 1295 855 171 120 26 chr12 93107219 93107411 -28150119 - B3 SINE B2 -6 210 1 1 1295 651 120 44 12 chr12 93110273 93110433 -28147097 + GA-rich Low_complexity Low_complexity 2 166 0 1 1295 1943 172 31 8 chr12 93110457 93110843 -28146687 + MTB_Mm LTR MaLR 6 400 -7 1 1295 698 197 28 0 chr12 93110857 93110999 -28146531 - B1_Mur4 SINE Alu 0 150 5 1 1295 34 18 0 50 chr12 93111006 93111038 -28146492 + AT_rich Low_complexity Low_complexity 1 31 0 1 1295 188 0 74 0 chr12 93111038 93111065 -28146465 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1295 1200 41 14 0 chr12 93111065 93111211 -28146319 - B1_Mur4 SINE Alu -2 148 1 1 1295 34 18 0 50 chr12 93111211 93111237 -28146293 + AT_rich Low_complexity Low_complexity 1 25 0 1 1295 1149 262 51 7 chr12 93112375 93112671 -28144859 + ORR1E LTR MaLR 3 311 -48 1 1295 342 0 0 0 chr12 93112702 93112740 -28144790 + (GGA)n Simple_repeat Simple_repeat 1 38 0 1 1295 612 206 0 0 chr12 93113375 93113506 -28144024 + CT-rich Low_complexity Low_complexity 2 132 0 1 1295 3425 43 35 9 chr12 93115036 93115461 -28142069 + RLTR10C LTR ERVK 1 436 0 1 1295 369 0 0 0 chr12 93116167 93116208 -28141322 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1295 263 278 52 88 chr12 93117741 93117934 -28139596 - MamGypLTR1c LTR Gypsy -580 223 38 1 1295 308 316 92 29 chr12 93118057 93118230 -28139300 + HAL1b LINE L1 627 810 -1199 1 1295 270 167 36 0 chr12 93118338 93118422 -28139108 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 1295 1203 119 5 1 chr12 93118505 93118712 -28138818 - ORR1A2 LTR MaLR 0 367 147 1 1295 497 293 162 16 chr12 93118712 93119225 -28138305 + L1MB1 LINE L1 5586 6181 -8 1 1295 240 278 40 40 chr12 93119332 93119433 -28138097 + HAL1b LINE L1 1351 1451 -558 1 1295 891 291 8 44 chr12 93119543 93119795 -28137735 - B4A SINE B4 -2 290 48 1 1295 693 275 57 5 chr12 93119800 93119994 -28137536 - ID_B1 SINE B4 -16 208 5 1 1295 403 246 82 71 chr12 93120080 93120264 -28137266 + HAL1b LINE L1 1588 1773 -236 1 1295 648 307 159 4 chr12 93120496 93120568 -28136962 - B4A SINE B4 0 292 222 1 1295 228 67 0 0 chr12 93120568 93120598 -28136932 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 1295 648 307 159 4 chr12 93120598 93120777 -28136753 - B4A SINE B4 -71 221 4 1 1295 702 176 66 0 chr12 93120855 93120991 -28136539 + ID_B1 SINE B4 80 224 0 1 1295 590 277 12 6 chr12 93121191 93121351 -28136179 + RSINE1 SINE B4 5 165 0 1 1295 220 184 0 0 chr12 93121361 93121399 -28136131 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1295 1069 241 69 31 chr12 93122061 93122352 -28135178 + ORR1D1 LTR MaLR 1 302 -72 1 1295 549 135 0 0 chr12 93122356 93122445 -28135085 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 1 1295 309 188 0 15 chr12 93122445 93122510 -28135020 + ORR1D1 LTR MaLR 311 374 0 1 1295 227 278 80 36 chr12 93122893 93123005 -28134525 - MIR3 SINE MIR -54 154 38 1 1295 365 247 32 11 chr12 93123101 93123195 -28134335 + B4 SINE B4 1 96 -196 1 1295 319 278 10 40 chr12 93123785 93123886 -28133644 + RMER20B LTR ERVK 28 125 -502 1 1295 588 14 0 0 chr12 93125031 93125100 -28132430 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1295 217 191 21 0 chr12 93125830 93125877 -28131653 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1295 348 111 0 0 chr12 93126629 93126683 -28130847 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1295 1161 316 38 36 chr12 93126771 93127270 -28130260 + Ricksha_c DNA MuDR 436 935 -1113 1 1295 991 265 92 24 chr12 93127658 93127994 -28129536 + ORR1E LTR MaLR 1 359 0 1 1295 430 307 9 9 chr12 93128094 93128209 -28129321 - B1_Mur1 SINE Alu -33 116 2 2 1295 210 244 0 0 chr12 93129246 93129287 -28128243 + PB1D10 SINE Alu 28 68 -49 2 1295 487 336 117 30 chr12 93131655 93132023 -28125507 - LTR16E1 LTR ERVL -3 535 136 2 1295 511 286 98 68 chr12 93132171 93132467 -28125063 - MER33 DNA MER1_type -10 314 10 2 1295 230 203 0 135 chr12 93133261 93133335 -28124195 + L2c LINE L2 3317 3380 -7 2 1295 686 186 39 8 chr12 93133634 93133764 -28123766 + Lx7 LINE L1 7049 7182 -514 2 1295 743 228 72 52 chr12 93133778 93134020 -28123510 - RMER12 LTR ERVK -35 1287 998 2 1295 20643 65 7 2 chr12 93134359 93137006 -28120524 + L1_Mm LINE L1 3109 5768 -115 2 1295 4999 35 8 7 chr12 93137006 93137609 -28119921 + L1Md_F2 LINE L1 5979 6582 0 2 1295 1587 216 70 35 chr12 93137684 93138293 -28119237 - RMER12 LTR ERVK -596 808 1 2 1295 1122 222 31 51 chr12 93138293 93138649 -28118881 + Lx7 LINE L1 7178 7526 -170 2 1295 825 161 0 32 chr12 93138655 93138809 -28118721 - B1_Mur3 SINE Alu 0 149 1 2 1295 413 147 62 21 chr12 93138812 93138909 -28118621 + Lx7 LINE L1 7569 7669 -27 2 1295 735 139 7 65 chr12 93138909 93139063 -28118467 + ORR1B2 LTR MaLR 1 145 -222 2 1295 321 26 0 0 chr12 93139064 93139102 -28118428 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1295 245 167 0 18 chr12 93139178 93139233 -28118297 + CT-rich Low_complexity Low_complexity 2 55 0 2 1295 276 327 3 50 chr12 93139589 93139786 -28117744 + MIRb SINE MIR 69 260 -2 2 1295 3324 57 2 12 chr12 93139867 93140278 -28117252 - MTB_Mm LTR MaLR 0 407 1 2 1295 629 238 120 26 chr12 93140358 93140625 -28116905 + B4 SINE B4 1 292 0 2 1295 303 310 26 34 chr12 93140818 93140935 -28116595 - ORR1E LTR MaLR -224 135 20 2 1295 567 0 0 0 chr12 93143195 93143258 -28114272 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1295 808 313 103 6 chr12 93143502 93143814 -28113716 + MTE-int LTR MaLR 2 343 -1237 2 1295 1711 278 130 21 chr12 93143808 93144378 -28113152 + MTE-int LTR MaLR 728 1359 -221 2 1295 502 191 89 30 chr12 93144680 93144815 -28112715 + RMER15 LTR ERVL 347 489 -86 2 1295 513 331 16 16 chr12 93144876 93145060 -28112470 + MTE-int LTR MaLR 1362 1545 -35 2 1295 400 342 146 49 chr12 93145048 93145377 -28112153 + ORR1D2 LTR MaLR 7 367 -3 2 1295 1570 160 125 0 chr12 93145593 93145912 -28111618 - ORR1B2 LTR MaLR -8 359 1 2 1295 27 29 0 0 chr12 93146794 93146828 -28110702 + AT_rich Low_complexity Low_complexity 1 34 0 2 1295 693 264 107 52 chr12 93146929 93147220 -28110310 + ORR1E LTR MaLR 22 328 -31 2 1295 193 128 43 0 chr12 93148548 93148595 -28108935 + T-rich Low_complexity Low_complexity 2 50 0 2 1295 353 264 11 0 chr12 93150297 93150388 -28107142 - MLT1N2 LTR MaLR -7 555 464 2 1295 232 135 37 37 chr12 93150537 93150591 -28106939 + ORR1A3-int LTR MaLR 1317 1370 0 2 1295 1708 139 0 0 chr12 93150591 93150865 -28106665 + ORR1A3 LTR MaLR 1 274 -52 2 1295 3319 167 217 58 chr12 93151978 93152117 -28105413 - Lx7 LINE L1 0 7696 7520 2 1295 186 43 0 0 chr12 93152117 93152140 -28105390 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 2 1295 3319 189 109 92 chr12 93152140 93152292 -28105238 - Lx7 LINE L1 -177 7519 7387 2 1295 1104 109 68 6 chr12 93152292 93152468 -28105062 + B2_Mm2 SINE B2 1 187 -8 2 1295 3319 189 109 92 chr12 93152468 93153070 -28104460 - Lx7 LINE L1 -310 7386 6801 2 1295 576 232 0 35 chr12 93153803 93153946 -28103584 + ID_B1 SINE B4 84 221 -3 2 1295 237 211 14 14 chr12 93154818 93154889 -28102641 + MIRb SINE MIR 194 268 0 2 1295 557 274 70 113 chr12 93155044 93155414 -28102116 - ORR1E LTR MaLR 0 359 6 2 1295 756 309 160 50 chr12 93156029 93156530 -28101000 + MER74A LTR ERVL 3 558 0 2 1295 474 282 85 12 chr12 93156747 93156912 -28100618 + MER89 LTR ERV1 241 417 -142 2 1295 561 169 23 8 chr12 93156912 93156932 -28100598 + polypyrimidine Low_complexity Low_complexity 117 136 0 2 1295 1370 55 0 6 chr12 93156932 93157113 -28100417 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1295 561 169 23 8 chr12 93157113 93157223 -28100307 + CT-rich Low_complexity Low_complexity 4 116 0 2 1295 290 344 104 24 chr12 93157266 93157377 -28100153 - Lx8 LINE L1 -8 7465 7332 2 1295 372 22 0 0 chr12 93157377 93157422 -28100108 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1295 290 344 104 24 chr12 93157422 93157599 -28099931 - Lx8 LINE L1 -142 7331 7154 2 1295 9910 61 6 12 chr12 93158018 93159377 -28098153 - L1Md_F2 LINE L1 0 6582 5251 2 1295 861 66 0 0 chr12 93159377 93159498 -28098032 + (TA)n Simple_repeat Simple_repeat 1 121 0 2 1295 9910 73 16 15 chr12 93159498 93160169 -28097361 - L1Md_F2 LINE L1 -633 5250 4560 2 1295 4019 61 0 0 chr12 93160169 93160678 -28096852 + L1Md_F2 LINE L1 4030 4538 -1345 2 1295 1008 267 5 18 chr12 93160693 93160914 -28096616 - ID_B1 SINE B4 -6 218 1 2 1295 338 293 67 149 chr12 93160972 93161241 -28096289 + MTEa LTR MaLR 103 366 -13 2 1295 1795 145 164 34 chr12 93161863 93162278 -28095252 + RMER15 LTR ERVL 22 490 -85 2 1295 199 205 0 0 chr12 93162651 93162690 -28094840 + MIR SINE MIR 214 252 -10 2 1295 318 192 101 13 chr12 93163714 93163793 -28093737 - AmnSINE1 SINE SINE -487 88 3 2 1295 432 303 31 31 chr12 93164478 93164638 -28092892 - RSINE1 SINE B4 -3 162 3 2 1295 461 305 86 39 chr12 93164793 93164854 -28092676 - Lx6 LINE L1 -1495 5965 5909 2 1295 284 0 28 0 chr12 93164854 93164890 -28092640 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 2 1295 724 244 94 22 chr12 93164890 93165166 -28092364 - Lx7 LINE L1 -1789 5907 5612 2 1295 473 329 92 22 chr12 93166418 93166732 -28090798 - MLT1C LTR MaLR 0 467 132 2 1295 991 183 63 115 chr12 93166751 93167071 -28090459 + MT2A LTR ERVL 2 302 -231 2 1295 425 202 10 21 chr12 93169162 93169258 -28088272 - B4 SINE B4 -191 101 7 2 1295 182 289 96 0 chr12 93170645 93170697 -28086833 + L2a LINE L2 3365 3421 -5 2 1295 24 67 0 0 chr12 93171216 93171261 -28086269 + AT_rich Low_complexity Low_complexity 1 45 0 2 1295 395 263 10 10 chr12 93172832 93172932 -28084598 - B4A SINE B4 -10 282 183 2 1295 201 121 0 0 chr12 93173011 93173044 -28084486 + (CATG)n Simple_repeat Simple_repeat 2 34 0 2 1295 492 322 11 60 chr12 93173056 93173238 -28084292 - B4A SINE B4 -118 174 2 2 1295 739 181 0 15 chr12 93173316 93173451 -28084079 + B1_Mus1 SINE Alu 1 133 -15 2 1295 405 0 0 0 chr12 93173451 93173496 -28084034 + (CCAA)n Simple_repeat Simple_repeat 3 47 0 2 1295 205 191 24 0 chr12 93173499 93173541 -28083989 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1295 769 247 11 11 chr12 93173541 93173721 -28083809 - B3A SINE B2 -14 184 5 2 1295 731 338 118 22 chr12 93174172 93174529 -28083001 + MER115 DNA Tip100 290 680 -13 2 1295 236 372 0 0 chr12 93174542 93174620 -28082910 - MIRb SINE MIR -83 185 108 2 1295 25 0 0 0 chr12 93174635 93174660 -28082870 + AT_rich Low_complexity Low_complexity 1 25 0 2 1295 38748 30 1 0 chr12 93174660 93182189 -28075341 - L1Md_T LINE L1 -1 6584 1 2 1295 417 306 24 62 chr12 93183550 93183759 -28073771 - MER20 DNA MER1_type -18 201 1 2 1295 390 94 0 0 chr12 93184176 93184240 -28073290 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1295 246 326 191 7 chr12 93184414 93184550 -28072980 - B3A SINE B2 -19 179 19 2 1295 21 0 0 0 chr12 93184707 93184728 -28072802 + AT_rich Low_complexity Low_complexity 1 21 0 2 1295 21 0 0 0 chr12 93186307 93186328 -28071202 + AT_rich Low_complexity Low_complexity 1 21 0 2 1295 341 187 196 11 chr12 93188234 93188326 -28069204 + RMER19C LTR ERVK 309 417 -485 2 1295 1147 179 9 105 chr12 93188326 93188657 -28068873 + RMER19C LTR ERVK 335 664 -238 2 1295 2411 80 6 58 chr12 93188807 93189152 -28068378 - ORR1A2 LTR MaLR 0 327 1 2 1295 21 0 0 0 chr12 93189523 93189544 -28067986 + AT_rich Low_complexity Low_complexity 1 21 0 2 1295 380 325 39 44 chr12 93190194 93190414 -28067116 - MIRb SINE MIR -13 255 31 2 1295 313 391 120 60 chr12 93190832 93191332 -28066198 + LTR16E1 LTR ERVL 5 534 -4 2 1296 522 288 19 56 chr12 93192312 93192474 -28065056 - RSINE1 SINE B4 -8 157 2 2 1296 304 364 65 52 chr12 93192796 93193121 -28064409 + MLT1A LTR MaLR 41 369 -5 2 1296 582 287 102 5 chr12 93193350 93193546 -28063984 + B3 SINE B2 1 215 -1 2 1296 304 316 27 68 chr12 93193742 93193888 -28063642 + MER58B DNA MER1_type 197 336 -5 2 1296 342 0 0 0 chr12 93194463 93194501 -28063029 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1296 440 310 37 19 chr12 93194632 93194793 -28062737 - B3 SINE B2 -11 205 42 2 1296 671 255 19 0 chr12 93195390 93195547 -28061983 - B3A SINE B2 -26 172 13 2 1296 495 0 0 0 chr12 93195565 93195620 -28061910 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2 1296 497 228 216 0 chr12 93195620 93195791 -28061739 - B4A SINE B4 -75 217 10 2 1296 181 324 59 0 chr12 93195862 93195930 -28061600 + L2b LINE L2 3304 3375 0 2 1296 193 299 69 40 chr12 93196370 93196471 -28061059 + MIRb SINE MIR 74 177 -91 2 1296 1661 26 5 0 chr12 93197421 93197612 -28059918 - B2_Mm1t SINE B2 0 193 2 2 1296 226 247 0 25 chr12 93197621 93197700 -28059830 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 2 1296 226 268 0 0 chr12 93197930 93197986 -28059544 + L2 LINE L2 2303 2358 -1061 2 1296 788 39 0 0 chr12 93198639 93198742 -28058788 + L1_Mus1 LINE L1 6465 6567 0 2 1296 246 271 0 0 chr12 93198810 93198869 -28058661 + MLT1N2 LTR MaLR 374 432 -130 2 1296 870 272 128 29 chr12 93199420 93199765 -28057765 + MTE2b LTR MaLR 1 379 0 2 1296 1773 216 33 10 chr12 93199953 93200350 -28057180 + MTD LTR MaLR 13 418 -1 2 1296 543 279 0 23 chr12 93200351 93200483 -28057047 + ID_B1 SINE B4 96 224 0 2 1296 326 252 17 35 chr12 93201087 93201202 -28056328 + MTEa LTR MaLR 267 379 0 2 1296 1174 208 49 40 chr12 93201233 93201584 -28055946 + Lx7 LINE L1 7177 7642 -54 2 1296 333 0 0 0 chr12 93202256 93202293 -28055237 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1296 249 250 0 0 chr12 93202819 93202883 -28054647 + LTR85a LTR Gypsy? 284 347 -355 2 1296 306 0 0 0 chr12 93202931 93202965 -28054565 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1296 396 191 178 15 chr12 93204171 93204309 -28053221 - RLTR26 LTR ERVK -643 166 8 3 1296 2166 222 87 0 chr12 93205061 93205589 -28051941 - Lx9 LINE L1 -2 7642 7069 3 1296 318 263 132 8 chr12 93205947 93206066 -28051464 - MIR SINE MIR -55 153 19 3 1296 405 0 0 0 chr12 93206605 93206650 -28050880 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1296 1335 23 34 17 chr12 93207776 93207952 -28049578 + L1Md_F3 LINE L1 6406 6584 0 3 1296 28 29 0 0 chr12 93208537 93208572 -28048958 + AT_rich Low_complexity Low_complexity 1 35 0 3 1296 23 0 0 0 chr12 93208601 93208624 -28048906 + AT_rich Low_complexity Low_complexity 1 23 0 3 1296 326 107 0 18 chr12 93208920 93208977 -28048553 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1296 1000 244 31 16 chr12 93208982 93209240 -28048290 - B4 SINE B4 -21 271 10 3 1296 282 87 0 0 chr12 93209578 93209624 -28047906 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1296 1572 222 50 104 chr12 93209662 93210104 -28047426 + Lx6 LINE L1 6915 7332 -128 3 1296 576 0 0 0 chr12 93210351 93210415 -28047115 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 3 1296 542 266 188 20 chr12 93210624 93210981 -28046549 + MER99 DNA hAT? 12 428 -403 3 1296 350 266 0 0 chr12 93211433 93211512 -28046018 + ID4_ SINE ID 2 80 -3 3 1296 1933 107 146 19 chr12 93211561 93211884 -28045646 - ORR1B2 LTR MaLR 0 367 4 3 1296 1363 319 75 25 chr12 93212105 93212736 -28044794 - Lx8 LINE L1 0 7473 6812 3 1296 406 223 29 19 chr12 93212900 93213005 -28044525 - RLTR23 LTR ERV1 0 430 325 3 1296 267 320 60 38 chr12 93213611 93213744 -28043786 + LTR80B LTR ERVL 38 173 -411 3 1296 242 250 25 38 chr12 93213740 93213819 -28043711 + LTR80B LTR ERVL 276 353 -230 3 1296 987 40 0 0 chr12 93214255 93214379 -28043151 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 3 1296 664 164 172 0 chr12 93214406 93214534 -28042996 - B1_Mur4 SINE Alu 0 150 1 3 1296 360 0 0 0 chr12 93214683 93214723 -28042807 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1296 306 0 0 0 chr12 93214723 93214756 -28042774 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1296 734 299 86 8 chr12 93214768 93215024 -28042506 - Lx9 LINE L1 -272 7372 7097 3 1296 1313 120 0 5 chr12 93215480 93215681 -28041849 - Lx2 LINE L1 0 6997 6798 3 1296 5493 105 7 34 chr12 93215734 93216605 -28040925 - L1_Mur1 LINE L1 -1337 4549 3703 3 1296 6293 111 50 12 chr12 93216607 93217605 -28039925 + Lx3C LINE L1 5937 6972 -4 3 1296 209 33 33 0 chr12 93217608 93217638 -28039892 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1296 304 351 83 37 chr12 93218072 93218288 -28039242 + Tigger15a DNA TcMar 10 235 -480 3 1296 502 41 27 0 chr12 93218309 93218382 -28039148 + (GA)n Simple_repeat Simple_repeat 1 75 0 3 1296 187 183 52 78 chr12 93218449 93218526 -28039004 + L2c LINE L2 3293 3367 -20 3 1296 234 0 0 0 chr12 93218735 93218761 -28038769 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 1296 834 98 0 0 chr12 93219312 93219434 -28038096 + (TTCC)n Simple_repeat Simple_repeat 1 122 0 3 1296 1369 132 46 25 chr12 93219476 93219717 -28037813 - Lx LINE L1 -7 6647 6402 3 1296 408 286 32 0 chr12 93220044 93220170 -28037360 + CT-rich Low_complexity Low_complexity 3 132 0 3 1296 409 276 16 39 chr12 93220376 93220504 -28037026 + B3A SINE B2 1 125 -73 3 1296 360 0 0 0 chr12 93220549 93220589 -28036941 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1296 225 245 19 19 chr12 93222628 93222691 -28034839 - L2a LINE L2 -1 3425 3324 3 1296 1086 256 187 79 chr12 93224094 93224730 -28032800 + MER67C LTR ERV1 1 705 -6 3 1296 673 306 138 21 chr12 93226124 93226599 -28030931 - MER68 LTR ERVL -2 561 31 3 1296 437 0 19 0 chr12 93227105 93227158 -28030372 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1296 868 187 0 0 chr12 93227171 93227310 -28030220 - B1_Mus2 SINE Alu -4 143 5 3 1296 988 286 3 54 chr12 93227649 93227982 -28029548 - Lx9 LINE L1 -407 7237 6922 3 1296 25 0 0 0 chr12 93228777 93228802 -28028728 + AT_rich Low_complexity Low_complexity 1 25 0 3 1296 252 86 0 0 chr12 93229361 93229396 -28028134 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1296 1774 50 45 32 chr12 93229703 93229950 -28027580 + Lx3_Mus LINE L1 6760 7009 0 3 1296 393 22 0 0 chr12 93230425 93230471 -28027059 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1296 186 43 0 0 chr12 93230471 93230493 -28027037 + (CG)n Simple_repeat Simple_repeat 2 24 0 3 1296 833 288 40 33 chr12 93230499 93230772 -28026758 - B4A SINE B4 -16 276 2 3 1296 469 351 50 50 chr12 93232040 93232340 -28025190 + MLT1F2 LTR MaLR 48 347 -213 3 1296 558 329 56 34 chr12 93232345 93232578 -28024952 + MLT1F2 LTR MaLR 310 547 -13 3 1296 3387 36 8 5 chr12 93232821 93233208 -28024322 - RLTR10 LTR ERVK -2 388 1 3 1296 1801 251 37 20 chr12 93233394 93233854 -28023676 - Lx6 LINE L1 -8 7452 6985 3 1296 1227 260 6 22 chr12 93233858 93234209 -28023321 + Lx6 LINE L1 6083 6459 -591 3 1296 652 101 0 0 chr12 93234284 93234373 -28023157 - L1_Mus3 LINE L1 -268 6370 6282 3 1296 885 116 76 41 chr12 93234373 93234544 -28022986 + L1_Mus3 LINE L1 6462 6638 0 3 1296 306 0 0 0 chr12 93234551 93234585 -28022945 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1296 411 21 0 0 chr12 93234585 93234632 -28022898 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1296 222 37 0 0 chr12 93234760 93234787 -28022743 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1296 230 325 188 19 chr12 93234803 93235010 -28022520 + LTR16A1 LTR ERVL 215 456 0 3 1296 223 302 0 16 chr12 93236287 93236351 -28021179 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1296 323 157 14 0 chr12 93236377 93236447 -28021083 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1296 3899 224 72 20 chr12 93237034 93237960 -28019570 + Lx6 LINE L1 6446 7419 -41 3 1296 1576 202 44 25 chr12 93238668 93239028 -28018502 + Lx5 LINE L1 6684 7050 0 3 1296 712 234 41 40 chr12 93239070 93239272 -28018258 - B3A SINE B2 -13 203 1 3 1296 249 230 0 0 chr12 93239504 93239578 -28017952 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1296 459 0 0 0 chr12 93239581 93239632 -28017898 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1296 28 79 0 0 chr12 93240127 93240190 -28017340 + AT_rich Low_complexity Low_complexity 1 63 0 3 1296 351 0 0 0 chr12 93240627 93240666 -28016864 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1296 1868 209 81 13 chr12 93240691 93241074 -28016456 + MTD LTR MaLR 11 419 0 3 1296 1834 241 46 46 chr12 93241074 93241617 -28015913 + MTD-int LTR MaLR 1 543 -715 3 1296 202 390 21 10 chr12 93241918 93242014 -28015516 + L3b LINE CR1 123 219 -263 3 1296 2797 69 55 6 chr12 93242050 93242416 -28015114 + Lx3A LINE L1 6592 6975 -6 3 1296 759 92 0 0 chr12 93242417 93242526 -28015004 + (GA)n Simple_repeat Simple_repeat 1 109 0 3 1296 2302 166 115 3 chr12 93242537 93242912 -28014618 + MTC LTR MaLR 5 421 0 3 1296 704 282 93 8 chr12 93243868 93244104 -28013426 + MIRb SINE MIR 13 268 0 3 1296 255 286 83 8 chr12 93244107 93244227 -28013303 - L2c LINE L2 -63 3324 3196 3 1296 676 280 73 107 chr12 93244358 93244658 -28012872 - B4 SINE B4 0 292 3 3 1296 184 330 53 35 chr12 93244660 93244773 -28012757 + L2c LINE L2 3041 3155 -232 3 1296 405 39 0 0 chr12 93245403 93245454 -28012076 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1296 4573 42 2 2 chr12 93245458 93245977 -28011553 - L1_Mus1 LINE L1 -10 6557 6039 3 1296 1030 253 91 101 chr12 93246144 93246552 -28010978 + Lx6 LINE L1 7048 7451 -9 3 1296 21 0 0 0 chr12 93246597 93246618 -28010912 + AT_rich Low_complexity Low_complexity 1 21 0 3 1296 219 281 0 0 chr12 93247042 93247099 -28010431 + CT-rich Low_complexity Low_complexity 3 59 0 3 1296 1109 222 10 5 chr12 93247841 93248045 -28009485 + B3 SINE B2 1 205 -11 3 1296 27 29 0 0 chr12 93248102 93248136 -28009394 + AT_rich Low_complexity Low_complexity 1 34 0 3 1296 207 286 0 0 chr12 93249431 93249494 -28008036 + T-rich Low_complexity Low_complexity 1 63 0 3 1296 241 255 84 11 chr12 93249648 93249743 -28007787 - MTEa LTR MaLR -18 361 260 3 1296 2418 198 67 6 chr12 93249744 93250221 -28007309 + Lx5 LINE L1 6542 7047 -3 3 1296 423 302 76 103 chr12 93250226 93250528 -28007002 - ORR1E LTR MaLR -53 317 24 3 1296 242 279 0 16 chr12 93250682 93250744 -28006786 + tRNA-Gly-GGA tRNA tRNA 1 61 -14 3 1296 204 135 0 0 chr12 93251922 93251959 -28005571 + (ATG)n Simple_repeat Simple_repeat 3 39 0 3 1296 189 94 0 0 chr12 93252902 93252934 -28004596 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1296 360 64 0 0 chr12 93253702 93253749 -28003781 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1296 809 286 10 10 chr12 93253749 93253943 -28003587 - B3 SINE B2 -22 194 1 3 1296 354 279 115 0 chr12 93254414 93254536 -28002994 - RMER15 LTR ERVL -15 560 425 3 1296 326 306 102 60 chr12 93254848 93254963 -28002567 - B4A SINE B4 -49 243 113 3 1296 483 18 0 0 chr12 93254963 93255019 -28002511 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1296 326 306 102 60 chr12 93255019 93255070 -28002460 - B4A SINE B4 -180 112 70 3 1296 1225 75 7 0 chr12 93255098 93255244 -28002286 - B1_Mm SINE Alu 0 147 1 3 1296 403 245 21 11 chr12 93255244 93255339 -28002191 - B4A SINE B4 -196 96 1 3 1296 1217 154 71 51 chr12 93255837 93255910 -28001620 - Lx2A1 LINE L1 -4 7004 6929 3 1296 203 0 37 0 chr12 93255910 93255937 -28001593 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1296 1217 154 71 51 chr12 93255937 93256158 -28001372 - Lx2A1 LINE L1 -80 6928 6704 3 1296 1558 133 4 47 chr12 93256351 93256587 -28000943 - URR1A DNA MER1_type 0 226 1 3 1296 190 200 27 0 chr12 93257842 93257883 -27999647 - MIRc SINE MIR -142 120 79 3 1296 281 350 65 0 chr12 93258245 93258368 -27999162 - MIRb SINE MIR -112 156 26 3 1296 448 294 89 0 chr12 93260995 93261141 -27996389 + Tigger5 DNA MER2_type 2 160 -2246 3 1296 374 304 52 45 chr12 93261287 93261442 -27996088 + MLT1A1 LTR MaLR 26 181 -227 4 1296 449 329 0 41 chr12 93261825 93261971 -27995559 - B4A SINE B4 -150 142 3 4 1296 266 167 42 0 chr12 93261978 93262026 -27995504 + MLT1E3 LTR MaLR 565 614 -10 4 1296 477 0 0 0 chr12 93263337 93263390 -27994140 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 4 1296 525 246 59 0 chr12 93263394 93263512 -27994018 - B1_Mur1 SINE Alu -13 136 12 4 1296 203 346 0 13 chr12 93263554 93263633 -27993897 - MIRm SINE MIR -130 146 69 4 1296 704 313 18 43 chr12 93263855 93264135 -27993395 + B4A SINE B4 2 274 -18 4 1296 210 290 10 31 chr12 93264154 93264250 -27993280 + (CATA)n Simple_repeat Simple_repeat 4 97 0 4 1296 184 161 0 0 chr12 93264901 93264932 -27992598 - L2a LINE L2 -6 3420 3390 4 1296 661 215 44 7 chr12 93265241 93265377 -27992153 - B1F SINE Alu -7 142 2 4 1296 25 0 0 0 chr12 93265553 93265578 -27991952 + AT_rich Low_complexity Low_complexity 1 25 0 4 1296 307 311 0 0 chr12 93265740 93265814 -27991716 - ID4 SINE ID 0 83 10 4 1296 531 147 0 0 chr12 93265814 93265930 -27991600 + (TATG)n Simple_repeat Simple_repeat 1 116 0 4 1296 472 230 29 23 chr12 93266890 93267002 -27990528 - PB1 SINE Alu -12 115 4 4 1296 534 175 8 53 chr12 93267036 93267169 -27990361 - Lx9 LINE L1 -1 7643 7517 4 1296 414 0 0 0 chr12 93267193 93267239 -27990291 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1296 487 301 62 17 chr12 93267445 93267621 -27989909 + B3A SINE B2 15 198 0 4 1296 7799 54 10 18 chr12 93268727 93269729 -27987801 - L1Md_F2 LINE L1 0 6582 5589 4 1296 180 0 0 0 chr12 93269949 93269969 -27987561 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1296 849 84 0 0 chr12 93271408 93271527 -27986003 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 4 1296 304 354 65 24 chr12 93271889 93272057 -27985473 - MLT1G1 LTR MaLR -302 277 103 4 1296 220 210 16 0 chr12 93273123 93273185 -27984345 + (CAA)n Simple_repeat Simple_repeat 2 64 0 4 1296 222 37 0 0 chr12 93274279 93274306 -27983224 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1296 253 254 16 33 chr12 93274825 93274886 -27982644 - MIRm SINE MIR -4 272 213 4 1296 1108 262 29 8 chr12 93275120 93275366 -27982164 - B4A SINE B4 -41 251 1 4 1296 2062 199 33 24 chr12 93275570 93275992 -27981538 - Lx3C LINE L1 -2 6974 6549 4 1296 226 221 118 50 chr12 93276016 93276135 -27981395 - Lx8 LINE L1 -9 7464 7338 4 1296 2060 99 9 74 chr12 93276165 93276243 -27981287 - ORR1A2 LTR MaLR 0 327 270 4 1296 3460 115 8 2 chr12 93276243 93276722 -27980808 - L1_Mus3 LINE L1 -8 6630 6149 4 1296 2060 99 9 74 chr12 93276722 93276993 -27980537 - ORR1A2 LTR MaLR -58 269 1 4 1296 1045 278 93 42 chr12 93277009 93277460 -27980070 - Lx8 LINE L1 -94 7379 6906 4 1296 594 307 53 0 chr12 93277610 93277760 -27979770 + RSINE1 SINE B4 4 161 -4 4 1296 219 257 0 0 chr12 93277820 93277855 -27979675 - Alu_5 SINE Alu -129 46 12 4 1296 1546 164 99 58 chr12 93278194 93278557 -27978973 + ORR1C1 LTR MaLR 1 378 0 4 1296 32 43 0 0 chr12 93278792 93278838 -27978692 + AT_rich Low_complexity Low_complexity 1 46 0 4 1296 261 0 0 0 chr12 93279482 93279511 -27978019 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1296 342 345 79 0 chr12 93280089 93280228 -27977302 + Tigger16a DNA Tigger 485 634 -299 4 1296 342 45 0 0 chr12 93280268 93280312 -27977218 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1296 26986 67 3 7 chr12 93281042 93285466 -27972064 - L1Md_F2 LINE L1 -9 6573 2170 4 1296 564 53 0 0 chr12 93285516 93285592 -27971938 + (TC)n Simple_repeat Simple_repeat 2 77 0 4 1296 183 133 0 0 chr12 93286410 93286440 -27971090 + L2a LINE L2 3397 3426 0 4 1296 262 340 29 68 chr12 93287357 93287562 -27969968 - MIRc SINE MIR -44 224 28 4 1296 260 379 78 0 chr12 93287973 93288089 -27969441 - MER91A DNA Tip100 0 196 72 4 1296 265 292 80 51 chr12 93288297 93288434 -27969096 - MIR SINE MIR -13 249 109 4 1296 4613 140 32 0 chr12 93288459 93289167 -27968363 - Lx4A LINE L1 -1 7057 6327 4 1296 393 321 39 53 chr12 93289168 93289375 -27968155 + MIR SINE MIR 22 225 -37 4 1296 677 214 0 11 chr12 93289394 93289574 -27967956 + CT-rich Low_complexity Low_complexity 1 178 0 4 1296 1001 32 8 0 chr12 93289582 93289707 -27967823 + (TTC)n Simple_repeat Simple_repeat 2 127 0 4 1296 2561 50 44 18 chr12 93289734 93290077 -27967453 - L1_Mus2 LINE L1 0 6566 6215 4 1296 321 263 61 74 chr12 93292922 93293070 -27964460 - RMER15 LTR ERVL -105 470 325 4 1296 409 325 51 0 chr12 93293535 93293692 -27963838 + MER5A1 DNA MER1_type 1 165 -1 4 1296 402 287 11 0 chr12 93293986 93294080 -27963450 + MTE2b LTR MaLR 1 95 -284 4 1296 982 314 43 25 chr12 93294066 93294389 -27963141 + MTE2b LTR MaLR 42 370 -9 4 1296 1600 246 3 3 chr12 93294400 93294738 -27962792 + MTE2b-int LTR MaLR 1 338 -1242 4 1296 379 239 30 0 chr12 93294806 93294973 -27962557 + GA-rich Low_complexity Low_complexity 2 173 0 4 1296 1122 249 206 8 chr12 93294973 93295366 -27962164 + MTE2b-int LTR MaLR 1110 1580 0 4 1296 877 274 39 18 chr12 93295366 93295699 -27961831 + MTE2b LTR MaLR 1 379 0 4 1296 385 262 135 20 chr12 93295699 93295847 -27961683 - MIRb SINE MIR -53 215 51 4 1296 1457 279 183 44 chr12 93296496 93297288 -27960242 - RMER19B LTR ERVK 0 902 1 4 1296 270 353 51 73 chr12 93297986 93298261 -27959269 - L2c LINE L2 -2 3385 3117 4 1296 261 0 0 0 chr12 93298426 93298455 -27959075 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1296 242 116 23 0 chr12 93299644 93299687 -27957843 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 1296 867 143 0 20 chr12 93299688 93299838 -27957692 - B1_Mus1 SINE Alu -1 147 1 4 1296 233 338 51 70 chr12 93300081 93300237 -27957293 - MER50 LTR ERV1 -10 724 572 4 1296 344 312 54 0 chr12 93300719 93300831 -27956699 + MER5A DNA MER1_type 45 162 -27 4 1296 378 0 0 0 chr12 93301041 93301083 -27956447 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1296 579 282 0 40 chr12 93301919 93302067 -27955463 + B1_Mur1 SINE Alu 1 142 -7 4 1296 203 57 86 0 chr12 93302077 93302112 -27955418 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1296 1138 194 14 5 chr12 93302551 93302774 -27954756 - URR1B DNA MER1_type 0 225 1 4 1296 1591 170 40 32 chr12 93302870 93303247 -27954283 - L1_Mur2 LINE L1 -1986 3891 3512 4 1296 1406 271 86 45 chr12 93303243 93304044 -27953486 + Lx6 LINE L1 6291 7460 0 4 1296 668 45 0 11 chr12 93304136 93304225 -27953305 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 4 1296 844 288 108 27 chr12 93304307 93304603 -27952927 - MTE2b LTR MaLR -25 354 35 4 1296 322 282 34 68 chr12 93304499 93304617 -27952913 - MT2A LTR ERVL -403 130 17 4 1296 180 0 0 0 chr12 93304694 93304714 -27952816 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1296 850 257 28 39 chr12 93305229 93305484 -27952046 + Charlie13b DNA Charlie 155 406 -106 4 1296 297 51 0 0 chr12 93305544 93305583 -27951947 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1296 413 372 75 47 chr12 93306414 93306733 -27950797 + ORR1E LTR MaLR 32 359 0 4 1296 298 226 105 16 chr12 93306829 93307060 -27950470 + L1_Rod LINE L1 5137 5448 -996 4 1296 310 247 0 11 chr12 93307086 93307176 -27950354 + L1MA4A LINE L1 5517 5605 -695 4 1296 555 311 17 64 chr12 93307178 93307323 -27950207 + RSINE1 SINE B4 2 143 -22 4 1296 483 33 0 0 chr12 93307323 93307384 -27950146 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1296 555 311 17 64 chr12 93307384 93307410 -27950120 + RSINE1 SINE B4 144 165 0 4 1296 455 237 25 38 chr12 93307433 93307591 -27949939 + L1MA4A LINE L1 5593 5748 -555 4 1296 355 113 0 19 chr12 93307611 93307665 -27949865 - ORR1B1 LTR MaLR -2 382 330 4 1296 1609 138 28 4 chr12 93307711 93307966 -27949564 - ORR1B1 LTR MaLR -42 352 92 4 1296 273 302 28 0 chr12 93307966 93308072 -27949458 + L1MA4A LINE L1 5809 5917 -386 4 1296 276 170 0 0 chr12 93309185 93309238 -27948292 + CT-rich Low_complexity Low_complexity 1 53 0 4 1296 455 0 18 0 chr12 93309351 93309406 -27948124 + (TATG)n Simple_repeat Simple_repeat 2 57 0 4 1296 331 248 21 156 chr12 93309424 93309610 -27947920 - RSINE1 SINE B4 0 165 5 4 1296 1365 78 0 59 chr12 93309659 93309863 -27947667 + B2_Mm2 SINE B2 4 195 0 4 1296 25 0 0 0 chr12 93310031 93310056 -27947474 + AT_rich Low_complexity Low_complexity 1 25 0 4 1296 1345 293 25 25 chr12 93310243 93310610 -27946920 + MTE2a LTR MaLR 13 379 0 4 1296 739 298 62 21 chr12 93310614 93310854 -27946676 + B4A SINE B4 41 290 -2 4 1296 405 0 0 0 chr12 93310872 93310917 -27946613 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1296 226 200 22 0 chr12 93311333 93311378 -27946152 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1296 254 260 57 48 chr12 93311402 93311507 -27946023 - MIRb SINE MIR -119 149 44 4 1296 310 178 63 56 chr12 93313071 93313214 -27944316 + (TTAAA)n Simple_repeat Simple_repeat 1 144 0 4 1296 509 290 14 0 chr12 93313263 93313408 -27944122 + RSINE1 SINE B4 3 149 -16 4 1296 369 93 0 0 chr12 93314421 93314475 -27943055 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1296 671 251 51 28 chr12 93315053 93315230 -27942300 + B3A SINE B2 36 216 0 4 1296 486 215 124 7 chr12 93315514 93315659 -27941871 - ORR1D2 LTR MaLR -3 367 206 4 1296 37 0 0 0 chr12 93316109 93316146 -27941384 + AT_rich Low_complexity Low_complexity 1 37 0 4 1296 1162 143 24 24 chr12 93316146 93316354 -27941176 - Lx4A LINE L1 -2 7056 6849 4 1296 2299 107 3 0 chr12 93316618 93316944 -27940586 - ORR1A2 LTR MaLR 0 327 1 4 1296 9511 138 149 4 chr12 93316944 93318658 -27938872 - ORR1A2-int LTR MaLR 0 1963 2 4 1296 1460 123 0 9 chr12 93318663 93318884 -27938646 - ORR1A2 LTR MaLR -8 319 101 4 1296 828 57 0 0 chr12 93318931 93319037 -27938493 + (TCCA)n Simple_repeat Simple_repeat 4 109 0 4 1296 288 154 39 0 chr12 93319074 93319138 -27938392 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 4 1296 255 61 0 0 chr12 93319138 93319171 -27938359 + (CAT)n Simple_repeat Simple_repeat 2 34 0 4 1296 288 154 39 0 chr12 93319171 93319184 -27938346 + (TCTA)n Simple_repeat Simple_repeat 3 16 0 4 1296 250 330 8 50 chr12 93322255 93322376 -27935154 - PB1D10 SINE Alu -1 116 1 5 1296 194 331 63 40 chr12 93322427 93322553 -27934977 - MIR SINE MIR -2 260 132 5 1296 28 0 0 0 chr12 93322611 93322639 -27934891 + AT_rich Low_complexity Low_complexity 1 28 0 5 1296 198 71 0 0 chr12 93322652 93322680 -27934850 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 5 20 4301 180 22 7 chr12 93322680 93323514 -27934016 - Lx4B LINE L1 -21 7037 6192 5 1297 394 53 0 17 chr12 93323506 93323564 -27933966 + L1_Mur2 LINE L1 2356 2412 -3465 5 1297 195 167 0 0 chr12 93326358 93326388 -27931142 - MIR SINE MIR -59 149 120 5 1297 1081 312 4 25 chr12 93326580 93326856 -27930674 - B4A SINE B4 -20 272 3 5 1297 7484 95 22 40 chr12 93326962 93328073 -27929457 - Lx3_Mus LINE L1 0 7009 5915 5 1297 701 53 11 0 chr12 93328073 93328167 -27929363 + (TC)n Simple_repeat Simple_repeat 2 96 0 5 1297 12528 70 5 38 chr12 93328167 93330054 -27927476 - Lx3_Mus LINE L1 -1095 5914 4098 5 1297 270 219 0 0 chr12 93330576 93330640 -27926890 + CT-rich Low_complexity Low_complexity 1 64 0 5 1297 747 284 139 32 chr12 93330898 93331272 -27926258 + L1M2 LINE L1 4787 5200 -943 5 1297 402 108 0 0 chr12 93331958 93332032 -27925498 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1297 478 252 46 30 chr12 93332051 93332182 -27925348 + B3A SINE B2 63 195 -3 5 1297 3014 66 24 7 chr12 93333287 93333701 -27923829 - BGLII LTR ERVK 0 421 1 5 1297 1820 161 13 3 chr12 93334138 93334450 -27923080 + Lx LINE L1 6340 6654 0 5 1297 384 111 0 0 chr12 93334581 93334644 -27922886 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1297 2829 228 20 24 chr12 93334665 93335372 -27922158 - Lx9 LINE L1 -217 7427 6724 5 1297 4459 164 29 12 chr12 93335370 93336228 -27921302 - Lx4B LINE L1 -122 6936 6064 5 1297 3578 144 30 2 chr12 93336225 93336849 -27920681 - L1_Mur2 LINE L1 -340 5537 4896 5 1297 414 331 53 25 chr12 93336849 93337131 -27920399 - L1MC3 LINE L1 -1239 6546 6257 5 1297 381 261 45 13 chr12 93337148 93337303 -27920227 - L1MC3 LINE L1 -1914 5871 5712 5 1297 1137 259 146 14 chr12 93339585 93339941 -27917589 + MTC LTR MaLR 1 403 -18 5 1297 273 135 26 26 chr12 93340044 93340120 -27917410 + (TATG)n Simple_repeat Simple_repeat 3 78 0 5 1297 231 345 36 12 chr12 93340490 93340611 -27916919 - Lx8 LINE L1 -2 7471 7348 5 1297 1788 186 85 48 chr12 93340611 93341152 -27916378 + RLTR31_Mm LTR ERVK 1 561 0 5 1297 231 345 36 12 chr12 93341152 93341197 -27916333 - Lx8 LINE L1 -126 7347 7302 5 1297 1177 226 87 45 chr12 93341216 93341573 -27915957 - Lx8 LINE L1 -333 7140 6769 5 1297 235 143 0 23 chr12 93341722 93341765 -27915765 - Lx8 LINE L1 -987 6486 6445 5 1297 384 22 0 0 chr12 93341794 93341839 -27915691 + (CAA)n Simple_repeat Simple_repeat 2 46 0 5 1297 2287 159 69 31 chr12 93341841 93342322 -27915208 - RMER5 LTR ERV1 -19 515 17 5 1297 394 274 0 31 chr12 93342333 93342461 -27915069 - Lx8 LINE L1 -1024 6449 6326 5 1297 7485 83 19 4 chr12 93342919 93343937 -27913593 + RLTR13D4 LTR ERVK 1 1033 0 5 1297 371 305 30 72 chr12 93344401 93344567 -27912963 - RLTR14 LTR ERV1 0 382 224 5 1297 1067 80 7 0 chr12 93345789 93345940 -27911590 + (GGAAA)n Simple_repeat Simple_repeat 4 155 0 5 1297 271 310 190 31 chr12 93345941 93346104 -27911426 - ORR1E LTR MaLR -162 197 9 5 1297 32067 87 13 3 chr12 93348517 93354690 -27902840 - L1Md_F2 LINE L1 -13 6569 331 5 1297 273 229 18 127 chr12 93356092 93356202 -27901328 + MT2B LTR ERVL 160 257 -344 5 1297 702 201 14 28 chr12 93356107 93356238 -27901292 + B1_Mur2 SINE Alu 9 140 -9 5 1297 501 17 0 0 chr12 93356238 93356296 -27901234 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 5 1297 702 201 14 28 chr12 93356296 93356307 -27901223 + B1_Mur2 SINE Alu 141 149 0 5 1297 1312 249 39 53 chr12 93356332 93356764 -27900766 + Lx9 LINE L1 6701 7126 -518 5 1297 370 283 50 0 chr12 93356773 93356893 -27900637 + Lx9 LINE L1 7307 7432 -212 5 1297 339 25 0 0 chr12 93356944 93356984 -27900546 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1297 23 54 0 0 chr12 93357083 93357120 -27900410 + AT_rich Low_complexity Low_complexity 1 37 0 5 1297 435 290 0 80 chr12 93357120 93357270 -27900260 - MER58A DNA MER1_type -39 185 48 5 1297 308 291 10 0 chr12 93357684 93357787 -27899743 + Lx9 LINE L1 7357 7460 -184 5 1297 349 301 9 0 chr12 93357787 93357900 -27899630 + Lx9 LINE L1 7359 7472 -172 5 1297 186 388 19 19 chr12 93357930 93358035 -27899495 + MIRb SINE MIR 163 267 -1 5 1297 1116 92 0 0 chr12 93358230 93358393 -27899137 + (GA)n Simple_repeat Simple_repeat 2 164 0 5 1297 471 18 0 0 chr12 93360600 93360656 -27896874 + (TTTTG)n Simple_repeat Simple_repeat 3 58 0 5 1297 1121 51 7 0 chr12 93360657 93360794 -27896736 - B1_Mus1 SINE Alu -10 138 1 5 1297 1559 45 0 0 chr12 93360992 93361190 -27896340 + L1Md_F2 LINE L1 5389 5586 -297 5 1297 7611 52 24 7 chr12 93361190 93362158 -27895372 + L1Md_F2 LINE L1 5587 6570 -12 5 1297 234 33 0 0 chr12 93362158 93362188 -27895342 + MTB_Mm LTR MaLR 323 352 -55 5 1297 905 285 34 37 chr12 93362436 93362731 -27894799 + MTE2a LTR MaLR 57 350 -29 5 1297 629 0 26 0 chr12 93362734 93362810 -27894720 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 5 1297 918 209 102 0 chr12 93362815 93362992 -27894538 - B3 SINE B2 -21 195 1 5 1297 253 143 0 0 chr12 93362997 93363039 -27894491 + MTE2a LTR MaLR 338 379 0 5 1297 836 283 77 18 chr12 93363117 93363466 -27894064 - MLT2B4 LTR ERVL -99 468 13 5 1297 405 102 0 0 chr12 93363671 93363730 -27893800 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 5 1297 1396 265 12 22 chr12 93363788 93364183 -27893347 + MTE2b LTR MaLR 3 399 -20 5 1297 302 117 64 13 chr12 93364197 93364275 -27893255 + GA-rich Low_complexity Low_complexity 5 86 0 5 1297 537 90 0 0 chr12 93366662 93366751 -27890779 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 1297 704 174 9 164 chr12 93367314 93367380 -27890150 + ORR1D1 LTR MaLR 97 156 -218 5 1297 210 37 0 0 chr12 93367380 93367407 -27890123 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 5 1297 704 174 9 164 chr12 93367407 93367553 -27889977 + ORR1D1 LTR MaLR 157 276 -98 5 1297 3359 151 18 8 chr12 93367553 93368176 -27889354 - L1_Mm LINE L1 -840 5043 4415 5 1297 4427 142 4 1 chr12 93368171 93368918 -27888612 + L1_Mm LINE L1 5093 5841 -42 5 1297 15424 36 1 2 chr12 93368918 93370878 -27886652 + L1Md_T LINE L1 3630 5586 -297 5 1297 8491 33 0 0 chr12 93370878 93371874 -27885656 + L1Md_T LINE L1 5587 6582 0 5 1297 5605 102 10 6 chr12 93371876 93372683 -27884847 + L1_Mus4 LINE L1 5827 6636 0 5 1297 366 59 0 0 chr12 93372691 93372704 -27884826 + (GGA)n Simple_repeat Simple_repeat 3 15 0 5 1297 1196 96 6 0 chr12 93372704 93372881 -27884649 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 5 1297 366 59 0 0 chr12 93372881 93372918 -27884612 + (GGA)n Simple_repeat Simple_repeat 1 37 0 5 1297 228 309 0 0 chr12 93372918 93372973 -27884557 + MTE2b LTR MaLR 330 384 0 5 1297 221 344 73 0 chr12 93373264 93373360 -27884170 + MIR SINE MIR 38 140 -122 5 1297 675 276 13 13 chr12 93374236 93374394 -27883136 + ID_B1 SINE B4 64 221 -3 5 1297 739 316 18 77 chr12 93375337 93375622 -27881908 + B4A SINE B4 2 269 -23 5 1297 399 73 0 0 chr12 93375623 93375678 -27881852 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1297 211 328 70 9 chr12 93375997 93376111 -27881419 + MIR SINE MIR 37 157 -105 5 1297 252 214 0 18 chr12 93376173 93376230 -27881300 + L2a LINE L2 3095 3150 -276 5 1297 249 57 0 0 chr12 93377470 93377505 -27880025 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1297 1235 48 0 0 chr12 93377509 93377655 -27879875 - B1_Mm SINE Alu 0 147 2 5 1297 427 363 54 44 chr12 93377868 93378161 -27879369 - MER74B LTR ERVL -286 336 1 5 1297 6662 29 12 0 chr12 93378195 93379031 -27878499 - L1Md_F3 LINE L1 -14 6570 5725 5 1297 244 33 0 0 chr12 93379028 93379058 -27878472 + L1_Mm LINE L1 5206 5235 -648 5 1297 28 29 0 0 chr12 93379566 93379601 -27877929 + AT_rich Low_complexity Low_complexity 1 35 0 5 1297 12979 44 1 2 chr12 93379601 93381999 -27875531 - L1Md_F2 LINE L1 -3 6579 4185 5 1297 274 365 63 43 chr12 93382850 93383105 -27874425 - L3 LINE CR1 -1 4488 4229 5 1297 30 0 0 0 chr12 93383163 93383193 -27874337 + AT_rich Low_complexity Low_complexity 1 30 0 5 1297 8347 131 28 13 chr12 93383193 93385083 -27872447 - Lx2B LINE L1 -762 6238 4304 5 1297 1775 240 47 20 chr12 93385089 93385546 -27871984 - Lx6 LINE L1 -174 7522 6795 5 1297 3636 175 25 26 chr12 93385543 93386126 -27871404 - L1_Mur3 LINE L1 -7 5873 5282 5 1297 3412 28 2 2 chr12 93386126 93386522 -27871008 + MTA_Mm LTR MaLR 1 396 0 5 1297 3636 175 25 26 chr12 93386522 93386707 -27870823 - L1_Mur3 LINE L1 -599 5281 5106 5 1297 922 47 23 40 chr12 93386707 93386884 -27870646 + (TTC)n Simple_repeat Simple_repeat 2 175 0 5 1297 407 128 64 0 chr12 93386887 93386996 -27870534 + CT-rich Low_complexity Low_complexity 2 117 0 5 1297 758 141 16 33 chr12 93386999 93387079 -27870451 + polypyrimidine Low_complexity Low_complexity 103 180 0 5 1297 1260 0 0 48 chr12 93387079 93387268 -27870262 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1297 758 141 16 33 chr12 93387268 93387370 -27870160 + polypyrimidine Low_complexity Low_complexity 1 102 0 5 1297 1076 80 0 0 chr12 93387372 93387509 -27870021 - B1_Mus2 SINE Alu -9 138 2 5 1297 794 161 68 26 chr12 93387509 93387647 -27869883 - L1_Mur3 LINE L1 -767 5113 4974 5 1297 183 80 0 0 chr12 93387647 93387672 -27869858 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 5 1297 794 161 68 26 chr12 93387672 93387724 -27869806 - L1_Mur3 LINE L1 -907 4973 4915 5 1297 421 256 0 22 chr12 93387752 93387932 -27869598 + CT-rich Low_complexity Low_complexity 3 178 0 5 1297 293 125 31 0 chr12 93387989 93388053 -27869477 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 5 1297 562 265 17 0 chr12 93388102 93388219 -27869311 - B4A SINE B4 -73 219 101 5 1297 3621 93 30 18 chr12 93388357 93388841 -27868689 - Lx3_Mus LINE L1 -611 6398 5907 5 1297 221 0 0 33 chr12 93388841 93388871 -27868659 + (TTA)n Simple_repeat Simple_repeat 1 29 0 5 1297 3621 93 30 18 chr12 93388871 93388957 -27868573 - Lx3_Mus LINE L1 -1103 5906 5821 5 1297 4742 78 9 14 chr12 93388957 93389598 -27867932 + Lx3_Mus LINE L1 6372 7009 0 5 1297 486 326 41 21 chr12 93389798 93389992 -27867538 + MER3 DNA MER1_type 12 209 0 5 1297 210 71 0 0 chr12 93390164 93390192 -27867338 + (TA)n Simple_repeat Simple_repeat 1 28 0 5 1297 275 315 73 9 chr12 93391842 93391951 -27865579 - MIRm SINE MIR -5 271 156 5 1297 531 269 21 28 chr12 93392786 93392931 -27864599 - ID_B1 SINE B4 0 224 81 5 1297 1439 313 61 20 chr12 93393314 93393923 -27863607 + MER92B LTR ERV1 1 634 -2 5 1297 217 136 23 0 chr12 93394038 93394072 -27863458 + CT-rich Low_complexity Low_complexity 12 46 0 5 1297 907 0 16 24 chr12 93394072 93394198 -27863332 + (TCTCC)n Simple_repeat Simple_repeat 2 126 0 6 1297 805 289 31 52 chr12 93394232 93394520 -27863010 - B4A SINE B4 -7 285 4 6 1297 307 342 13 25 chr12 93394684 93394843 -27862687 - MER34A LTR ERV1 -134 437 281 6 1297 243 0 0 0 chr12 93395728 93395755 -27861775 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1297 788 321 51 36 chr12 93396260 93396651 -27860879 + MER34A LTR ERV1 27 423 -148 6 1297 3253 48 2 0 chr12 93396660 93397055 -27860475 + MTA_Mm LTR MaLR 1 396 0 6 1297 795 103 22 7 chr12 93397550 93397687 -27859843 + (TTCC)n Simple_repeat Simple_repeat 3 141 0 6 1297 640 336 42 0 chr12 93397689 93397903 -27859627 - ID_B1 SINE B4 0 224 2 6 1297 1068 317 73 26 chr12 93397976 93398361 -27859169 + MTD LTR MaLR 5 407 -12 6 1297 1659 185 15 87 chr12 93398430 93398649 -27858881 - ORR1D1 LTR MaLR 0 374 176 6 1297 450 0 0 0 chr12 93398649 93398699 -27858831 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1297 1659 185 15 87 chr12 93398699 93398882 -27858648 - ORR1D1 LTR MaLR -199 175 1 6 1297 222 37 0 0 chr12 93400076 93400103 -27857427 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1297 2576 99 6 3 chr12 93400816 93401182 -27856348 - L1_Mus3 LINE L1 0 6638 6272 6 1297 441 0 0 0 chr12 93401254 93401303 -27856227 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1297 251 281 49 49 chr12 93402389 93402531 -27854999 - L2a LINE L2 -52 3374 3233 6 1297 278 321 72 14 chr12 93403035 93403174 -27854356 - L2a LINE L2 -722 2697 2551 6 1297 372 294 22 0 chr12 93403299 93403391 -27854139 + B4A SINE B4 1 94 -198 6 1297 229 284 104 0 chr12 93403434 93403501 -27854029 + B4 SINE B4 201 274 -18 6 1297 437 160 17 0 chr12 93403528 93403647 -27853883 + (CAGA)n Simple_repeat Simple_repeat 2 122 0 6 1297 235 261 0 0 chr12 93403967 93404013 -27853517 + MLT1D LTR MaLR 7 52 -453 6 1297 39475 8 1 1 chr12 93404015 93411213 -27846317 - L1Md_A LINE L1 0 6582 1 6 1297 486 277 67 78 chr12 93411476 93411731 -27845799 - RLTR14 LTR ERV1 0 382 131 6 1297 338 340 12 62 chr12 93411904 93412064 -27845466 + MLT1D LTR MaLR 354 505 0 6 1297 189 74 0 0 chr12 93412403 93412430 -27845100 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 6 1297 502 308 107 18 chr12 93413002 93413227 -27844303 - MIRb SINE MIR -8 260 16 6 1297 189 0 0 0 chr12 93413541 93413562 -27843968 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1297 929 210 38 27 chr12 93414019 93414205 -27843325 + B3 SINE B2 1 188 -28 6 1297 213 324 68 59 chr12 93415448 93415566 -27841964 - MIRb SINE MIR -90 172 54 6 1297 26 50 0 0 chr12 93416245 93416285 -27841245 + AT_rich Low_complexity Low_complexity 1 40 0 6 1297 807 31 0 0 chr12 93416809 93416907 -27840623 + (GA)n Simple_repeat Simple_repeat 2 99 0 6 1297 304 325 73 8 chr12 93417140 93417264 -27840266 + MER3 DNA MER1_type 1 132 -77 6 1297 350 312 74 36 chr12 93418233 93418542 -27838988 - L1MA5 LINE L1 -9 6291 5971 6 1297 359 254 64 24 chr12 93419093 93419218 -27838312 - MER58B DNA MER1_type -123 218 89 6 1297 632 163 45 13 chr12 93419738 93419893 -27837637 + Lx9 LINE L1 7365 7524 -120 6 1297 321 82 0 0 chr12 93421016 93421065 -27836465 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1297 293 314 48 55 chr12 93421703 93421848 -27835682 + MIRm SINE MIR 18 161 -115 6 1297 549 30 0 0 chr12 93422035 93422102 -27835428 + (CAAAC)n Simple_repeat Simple_repeat 2 68 0 6 1297 879 308 58 24 chr12 93422358 93422687 -27834843 - MLT1B LTR MaLR -3 387 48 6 1297 1016 282 20 16 chr12 93422807 93423056 -27834474 - B4A SINE B4 -10 282 33 6 1297 471 395 48 18 chr12 93423135 93423362 -27834168 - MLT2B3 LTR ERVL -180 374 141 6 1297 1741 187 45 48 chr12 93423362 93423739 -27833791 + ORR1C2 LTR MaLR 1 376 -8 6 1297 482 281 63 28 chr12 93423739 93423882 -27833648 - MLT2B3 LTR ERVL -406 148 1 6 1297 281 344 74 37 chr12 93425805 93425968 -27831562 + MIRb SINE MIR 20 188 -80 6 1297 237 191 91 45 chr12 93426103 93426169 -27831361 - ORR1E LTR MaLR -44 315 247 6 1297 243 228 18 0 chr12 93426236 93426293 -27831237 - ORR1E LTR MaLR -214 145 88 6 1297 228 269 28 56 chr12 93426349 93426420 -27831110 - ORR1E LTR MaLR -290 69 1 6 1297 240 286 87 36 chr12 93427681 93427819 -27829711 - MIR SINE MIR -7 255 111 6 1297 351 184 26 26 chr12 93427882 93427960 -27829570 - MER5A1 DNA MER1_type -61 105 28 6 1297 274 322 38 83 chr12 93429809 93429941 -27827589 + MLT1J LTR MaLR 91 216 -296 6 1297 461 181 45 38 chr12 93430259 93430391 -27827139 - Lx4B LINE L1 -7 7051 6919 6 1297 1475 184 55 81 chr12 93430564 93430948 -27826582 - ORR1D1 LTR MaLR 0 374 1 6 1297 225 287 89 33 chr12 93431259 93431349 -27826181 + MLT1J LTR MaLR 417 511 -1 6 1297 180 111 0 0 chr12 93431479 93431506 -27826024 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1297 409 250 17 26 chr12 93432325 93432440 -27825090 - Tigger5 DNA MER2_type -1 2405 2292 6 1297 2825 199 34 2 chr12 93432535 93433070 -27824460 - RMER15 LTR ERVL -5 570 19 6 1297 3943 48 0 0 chr12 93433150 93433673 -27823857 - L1Md_T LINE L1 0 6582 6109 6 1297 401 293 28 35 chr12 93433788 93433933 -27823597 + B1F1 SINE Alu 1 144 -5 6 1297 2890 180 122 27 chr12 93435659 93436332 -27821198 - RMER19A LTR ERVK 0 737 1 6 1297 395 325 45 22 chr12 93436524 93436750 -27820780 + MLT1D LTR MaLR 35 265 -362 6 1297 1236 67 0 0 chr12 93436750 93436930 -27820600 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1297 327 375 40 58 chr12 93436930 93436978 -27820552 + MLT1D LTR MaLR 266 304 -323 6 1297 181 293 35 0 chr12 93439287 93439345 -27818185 + L2a LINE L2 3272 3331 -95 6 1297 207 0 0 0 chr12 93439735 93439758 -27817772 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1297 664 276 68 11 chr12 93439845 93440021 -27817509 - B4A SINE B4 0 292 107 6 1297 231 333 14 0 chr12 93440035 93440107 -27817423 + B4A SINE B4 61 133 -159 6 1297 307 347 127 26 chr12 93440159 93440387 -27817143 + MLT1D LTR MaLR 335 585 -10 6 1297 666 37 0 0 chr12 93440407 93440488 -27817042 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1297 257 348 97 21 chr12 93441317 93441337 -27816193 - RSINE1 SINE B4 -9 156 2 6 1297 524 234 129 0 chr12 93441337 93441461 -27816069 - B3A SINE B2 -58 140 1 6 1297 22 0 0 0 chr12 93441557 93441579 -27815951 + AT_rich Low_complexity Low_complexity 1 22 0 6 1297 7455 167 21 18 chr12 93441687 93441699 -27815831 - Lx4B LINE L1 -7 7051 7040 6 1297 306 0 0 0 chr12 93441699 93441733 -27815797 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 6 1297 7455 167 21 18 chr12 93441733 93443172 -27814358 - Lx4B LINE L1 -19 7039 5595 6 1297 5907 171 30 14 chr12 93443157 93443190 -27814340 - L1_Mur2 LINE L1 -3197 2680 2632 6 1297 1330 6 0 0 chr12 93443190 93443346 -27814184 - L1Md_T LINE L1 0 6582 6427 6 1297 6699 171 31 12 chr12 93443346 93443930 -27813600 - L1_Mur2 LINE L1 -3246 2631 2054 6 1297 351 0 0 0 chr12 93443930 93443969 -27813561 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1297 270 0 0 0 chr12 93443969 93443998 -27813532 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1297 6699 176 26 12 chr12 93443998 93445128 -27812402 - L1_Mur2 LINE L1 -3824 2053 907 6 1297 1182 55 7 0 chr12 93445719 93445865 -27811665 - B1_Mm SINE Alu 0 147 1 6 1297 263 232 111 14 chr12 93446077 93446221 -27811309 - Lx9 LINE L1 -1 7643 7486 6 1297 225 0 0 0 chr12 93446221 93446246 -27811284 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1297 338 195 0 11 chr12 93446245 93446333 -27811197 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1297 182 171 0 24 chr12 93446418 93446460 -27811070 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 6 1297 310 280 0 8 chr12 93446462 93446581 -27810949 - Lx9 LINE L1 -126 7518 7401 6 1297 21 82 0 0 chr12 93446715 93446764 -27810766 + AT_rich Low_complexity Low_complexity 1 49 0 6 1297 210 133 0 43 chr12 93446937 93446984 -27810546 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 6 1297 2646 54 17 26 chr12 93446997 93447342 -27810188 - ORR1A1 LTR MaLR -4 342 1 6 1297 6675 8 0 0 chr12 93447523 93448305 -27809225 + L1Md_A LINE L1 4805 5586 -297 6 1297 8931 10 0 0 chr12 93448305 93449301 -27808229 + L1Md_A LINE L1 5587 6582 0 6 1297 21 36 0 0 chr12 93449414 93449442 -27808088 + AT_rich Low_complexity Low_complexity 1 28 0 6 1297 916 229 108 37 chr12 93449469 93449567 -27807963 - RMER1B Other Other -15 1051 937 6 1297 441 0 0 0 chr12 93449567 93449616 -27807914 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1297 916 229 108 37 chr12 93449616 93449785 -27807745 - RMER1B Other Other -130 936 765 6 1297 1213 162 116 63 chr12 93449789 93450091 -27807439 - ORR1A3 LTR MaLR -8 318 1 6 1297 2080 238 30 60 chr12 93450094 93450796 -27806734 - RMER1A Other Other -326 704 45 6 1297 1346 235 62 10 chr12 93450797 93451282 -27806248 - RMER4A LTR ERVK 0 585 70 6 1297 1152 280 6 21 chr12 93451306 93451634 -27805896 - RMER1B Other Other -737 329 7 6 1297 257 188 0 30 chr12 93452992 93453058 -27804472 - L1M3e LINE L1 -6935 95 32 6 1297 230 95 24 0 chr12 93453163 93453205 -27804325 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1297 570 308 43 60 chr12 93453206 93453441 -27804089 - B4A SINE B4 -10 282 52 6 1297 237 293 0 118 chr12 93453593 93453686 -27803844 - ID4 SINE ID -1 82 1 6 1298 215 370 132 30 chr12 93454861 93455095 -27802435 + MIR SINE MIR 1 258 -10 6 1298 266 268 124 9 chr12 93455225 93455338 -27802192 + ID_B1 SINE B4 93 218 -6 6 1298 306 180 0 0 chr12 93455338 93455399 -27802131 + (CCA)n Simple_repeat Simple_repeat 3 63 0 6 1298 489 190 25 0 chr12 93455981 93456102 -27801428 - Lx9 LINE L1 -1 7643 7520 6 1298 682 250 233 17 chr12 93456166 93456402 -27801128 - B4A SINE B4 -5 287 1 6 1298 21 36 0 0 chr12 93456811 93456839 -27800691 + AT_rich Low_complexity Low_complexity 1 28 0 6 1298 25 31 0 0 chr12 93457580 93457612 -27799918 + AT_rich Low_complexity Low_complexity 1 32 0 6 1298 486 253 192 20 chr12 93458756 93459163 -27798367 + L1MD1 LINE L1 982 1458 -5175 6 1298 809 151 0 11 chr12 93459170 93459351 -27798179 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1298 415 292 23 23 chr12 93459389 93459561 -27797969 + L1MD1 LINE L1 1487 1658 -4975 6 1298 371 329 0 0 chr12 93459561 93459646 -27797884 + RSINE1 SINE B4 45 129 -36 6 1298 216 97 0 0 chr12 93459666 93459697 -27797833 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1298 425 317 50 58 chr12 93459709 93459967 -27797563 + L1MD1 LINE L1 1646 1901 -4732 6 1298 467 160 11 0 chr12 93459967 93460061 -27797469 + (TA)n Simple_repeat Simple_repeat 1 95 0 6 1298 21 71 0 0 chr12 93460154 93460196 -27797334 + AT_rich Low_complexity Low_complexity 1 42 0 6 1298 267 318 40 87 chr12 93460228 93460734 -27796796 + L1MD1 LINE L1 2547 3028 -3509 6 1298 599 276 92 0 chr12 93460735 93460887 -27796643 + ORR1D2 LTR MaLR 181 346 -24 7 1298 290 307 13 0 chr12 93460883 93460958 -27796572 + MTE-int LTR MaLR 294 369 -1211 7 1298 449 237 20 0 chr12 93460945 93461062 -27796468 - MTD LTR MaLR -35 384 268 7 1298 1533 254 66 9 chr12 93461116 93461520 -27796010 + MTD LTR MaLR 1 407 -12 7 1298 727 322 51 35 chr12 93461531 93462181 -27795349 + L1MD1 LINE L1 4930 5589 -948 6 1298 1145 212 150 39 chr12 93462353 93462509 -27795021 + ORR1D1 LTR MaLR 2 181 -193 7 1298 243 0 0 0 chr12 93462509 93462536 -27794994 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1298 1145 212 150 39 chr12 93462536 93462712 -27794818 + ORR1D1 LTR MaLR 182 371 -3 7 1298 317 184 13 0 chr12 93462712 93462788 -27794742 + L1MD1 LINE L1 5771 5847 -903 6 1298 287 311 30 80 chr12 93462944 93463049 -27794481 + L1MD1 LINE L1 5980 6083 -550 6 1298 502 271 86 27 chr12 93463049 93463235 -27794295 + B3A SINE B2 2 198 0 7 1298 287 311 30 80 chr12 93463235 93463328 -27794202 + L1MD1 LINE L1 6084 6168 -465 6 1298 298 260 63 29 chr12 93463398 93463572 -27793958 + L1MD1 LINE L1 6448 6627 -6 6 1298 180 125 0 0 chr12 93463683 93463715 -27793815 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1298 229 346 46 18 chr12 93463923 93464032 -27793498 + L2b LINE L2 3262 3373 -2 7 1298 347 291 165 57 chr12 93466783 93467031 -27790499 + B4A SINE B4 2 276 -16 7 1298 264 329 168 40 chr12 93467640 93467944 -27789586 + L3 LINE CR1 4016 4358 -131 7 1298 425 322 0 17 chr12 93468326 93468446 -27789084 - B1F1 SINE Alu -21 128 11 7 1298 258 32 0 0 chr12 93469029 93469060 -27788470 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1298 239 115 0 37 chr12 93469067 93469121 -27788409 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 7 1298 369 0 0 0 chr12 93469823 93469864 -27787666 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1298 206 118 0 0 chr12 93470073 93470107 -27787423 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1298 480 319 187 1 chr12 93471345 93471554 -27785976 + B4A SINE B4 1 247 -45 7 1298 225 291 22 133 chr12 93471541 93471676 -27785854 + B3A SINE B2 5 124 -74 7 1298 207 69 0 0 chr12 93472151 93472180 -27785350 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 7 1298 198 0 0 0 chr12 93473323 93473345 -27784185 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1298 26 0 0 0 chr12 93473620 93473646 -27783884 + AT_rich Low_complexity Low_complexity 1 26 0 7 1298 405 0 0 0 chr12 93474845 93474890 -27782640 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1298 606 109 0 0 chr12 93475866 93475958 -27781572 + (TAA)n Simple_repeat Simple_repeat 2 93 0 7 1298 294 29 0 0 chr12 93476713 93476748 -27780782 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1298 795 229 48 24 chr12 93477453 93477659 -27779871 - B3 SINE B2 -5 211 1 7 1298 324 282 113 0 chr12 93477663 93477787 -27779743 - L1MC3 LINE L1 -316 7469 7332 7 1298 1145 211 67 40 chr12 93477812 93477940 -27779590 - ORR1D1 LTR MaLR 0 374 245 7 1298 1176 34 25 12 chr12 93477940 93478111 -27779419 + (CAGG)n Simple_repeat Simple_repeat 1 177 -74 7 1298 1176 34 25 12 chr12 93478118 93478188 -27779342 + (CAGG)n Simple_repeat Simple_repeat 178 251 0 7 1298 1145 211 67 40 chr12 93478188 93478348 -27779182 - ORR1D1 LTR MaLR -144 230 73 7 1298 208 311 126 25 chr12 93478719 93478861 -27778669 - MIR SINE MIR -57 151 2 7 1298 439 317 122 41 chr12 93479888 93480158 -27777372 - B4A SINE B4 0 292 1 7 1298 728 304 84 13 chr12 93480450 93480677 -27776853 + Tigger5 DNA MER2_type 2 244 -2162 7 1298 560 230 9 0 chr12 93480671 93480784 -27776746 + Tigger5 DNA MER2_type 2291 2404 -2 7 1298 366 23 0 0 chr12 93481132 93481175 -27776355 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 1298 575 324 27 7 chr12 93481300 93481446 -27776084 + RSINE1 SINE B4 7 155 -10 7 1298 396 59 0 0 chr12 93481447 93481498 -27776032 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 7 1298 1088 158 72 91 chr12 93481594 93481659 -27775871 - RMER16 LTR ERVK 0 533 470 7 1298 1691 41 14 9 chr12 93481659 93481879 -27775651 + L1Md_F2 LINE L1 6361 6581 -1 7 1298 1088 158 72 91 chr12 93481879 93482078 -27775452 - RMER16 LTR ERVK -64 469 274 7 1298 3438 57 6 0 chr12 93482091 93482559 -27774971 - L1_Mm LINE L1 -1522 4361 3891 7 1298 1817 62 45 4 chr12 93482559 93482802 -27774728 + L1_Mus1 LINE L1 6307 6559 -8 7 1298 1086 242 51 12 chr12 93482831 93483086 -27774444 - RMER16 LTR ERVK -268 265 1 7 1298 236 188 0 40 chr12 93483980 93484030 -27773500 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 7 1298 836 323 51 8 chr12 93484042 93484295 -27773235 - B4 SINE B4 -4 288 25 7 1298 189 0 0 0 chr12 93485358 93485379 -27772151 + (CCCCCT)n Simple_repeat Simple_repeat 3 23 0 7 1298 270 322 75 27 chr12 93486067 93486478 -27771052 + L1M5 LINE L1 4972 5402 -744 7 1298 1420 64 5 26 chr12 93486834 93487027 -27770503 + B2_Mm1a SINE B2 2 190 -3 7 1298 338 317 98 72 chr12 93487264 93487458 -27770072 - B3A SINE B2 -17 199 1 7 1298 403 267 128 8 chr12 93487788 93487851 -27769679 + B3 SINE B2 57 130 -86 7 1298 1557 86 18 9 chr12 93487851 93488074 -27769456 - L1Md_F2 LINE L1 -2 6580 6356 7 1298 403 267 128 8 chr12 93488074 93488127 -27769403 + B3 SINE B2 131 185 -31 7 1298 21 36 0 0 chr12 93488308 93488336 -27769194 + AT_rich Low_complexity Low_complexity 1 28 0 7 1298 207 139 0 0 chr12 93488349 93488385 -27769145 + (TCC)n Simple_repeat Simple_repeat 3 38 0 7 1298 463 269 60 23 chr12 93488388 93488521 -27769009 - ID_B1 SINE B4 -14 210 73 7 1298 1676 72 48 12 chr12 93489140 93489392 -27768138 + L1_Mus3 LINE L1 6371 6631 -7 7 1298 610 281 140 7 chr12 93489755 93490054 -27767476 + MER34A LTR ERV1 218 556 -15 7 1298 257 309 136 72 chr12 93490045 93490310 -27767220 - LTR37A LTR ERV1 -140 286 5 7 1298 419 310 139 36 chr12 93491182 93491483 -27766047 - MLT1A1 LTR MaLR -76 332 1 7 1298 885 350 103 40 chr12 93491499 93492004 -27765526 - MLT1A1-int LTR MaLR -26 1709 1173 7 1298 23 54 0 0 chr12 93492018 93492055 -27765475 + AT_rich Low_complexity Low_complexity 1 37 0 7 1298 4896 50 2 0 chr12 93492352 93492946 -27764584 + L1_Mus1 LINE L1 5954 6548 -19 7 1298 2316 35 3 3 chr12 93492967 93493250 -27764280 + L1Md_F2 LINE L1 6300 6582 0 7 1298 2189 157 6 3 chr12 93493294 93493645 -27763885 - RLTR15 LTR ERVK -7 352 1 7 1298 501 272 69 23 chr12 93493645 93493818 -27763712 - RLTR11A2 LTR ERVK -346 181 1 7 1298 447 374 11 62 chr12 93493836 93494110 -27763420 - MLT1A1-int LTR MaLR -580 1155 896 7 1298 1177 279 94 0 chr12 93494395 93494735 -27762795 + MTEa LTR MaLR 8 379 0 7 1298 978 364 54 95 chr12 93494735 93495178 -27762352 + Tigger7 DNA MER2_type 10 458 -2033 7 1298 5843 102 53 49 chr12 93495178 93495943 -27761587 - Lx3_Mus LINE L1 0 7009 6212 7 1298 1190 68 0 0 chr12 93495943 93496090 -27761440 - B1_Mus2 SINE Alu 0 147 1 7 1298 5843 102 53 49 chr12 93496090 93496285 -27761245 - Lx3_Mus LINE L1 -798 6211 6045 7 1298 978 364 54 95 chr12 93496285 93496449 -27761081 + Tigger7 DNA MER2_type 459 592 -1899 7 1298 4060 70 0 2 chr12 93496449 93497247 -27760283 - L1_Mus2 LINE L1 -440 6126 5332 7 1298 3267 65 14 2 chr12 93497247 93497676 -27759854 + L1_Mus2 LINE L1 6133 6566 0 7 1298 29 78 0 0 chr12 93497684 93497748 -27759782 + AT_rich Low_complexity Low_complexity 1 64 0 7 1298 791 280 90 63 chr12 93497901 93498264 -27759266 - MLT1A1 LTR MaLR -4 463 39 7 1298 4218 125 7 80 chr12 93498271 93499080 -27758450 - RMER17A LTR ERVK -1 750 1 7 1298 1712 299 63 42 chr12 93499122 93499720 -27757810 - MER82 DNA MER2_type -42 611 1 7 1298 201 74 0 0 chr12 93499902 93499929 -27757601 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1298 749 201 0 0 chr12 93500707 93500846 -27756684 + B1_Mus2 SINE Alu 9 147 0 1 1298 266 50 25 0 chr12 93500857 93500897 -27756633 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 1298 237 264 34 22 chr12 93501339 93501428 -27756102 + MIR SINE MIR 127 216 -46 3 1298 959 324 77 22 chr12 93501428 93501921 -27755609 + Lx8 LINE L1 6647 7166 -307 4 1298 34 84 0 0 chr12 93501932 93502015 -27755515 + AT_rich Low_complexity Low_complexity 1 83 0 5 1298 332 323 70 58 chr12 93502347 93502745 -27754785 - LTR37A LTR ERV1 -6 420 18 6 1298 383 350 27 54 chr12 93503109 93503293 -27754237 - MLT1A0 LTR MaLR -8 357 179 7 1298 1357 221 27 107 chr12 93503768 93503932 -27753598 + MTD LTR MaLR 43 203 -216 8 1298 1520 26 25 20 chr12 93503932 93504128 -27753402 + L1Md_A LINE L1 6386 6582 0 9 1298 2263 122 60 38 chr12 93504132 93504531 -27752999 + Lx2 LINE L1 6583 6990 -7 1 1298 1357 221 27 107 chr12 93504531 93504771 -27752759 + MTD LTR MaLR 204 419 0 8 1298 281 284 18 64 chr12 93504829 93504938 -27752592 + RMER12 LTR ERVK 746 849 -473 1 1298 880 255 39 10 chr12 93504911 93505117 -27752413 - B4A SINE B4 0 292 81 1 1298 1416 284 178 24 chr12 93505493 93506088 -27751442 - Lx6 LINE L1 -27 7433 6747 1 1298 386 321 94 74 chr12 93506303 93506594 -27750936 - MER31B LTR ERV1 0 466 153 1 1298 2027 127 31 3 chr12 93506594 93506919 -27750611 + Lx LINE L1 6314 6647 -7 1 1298 386 321 94 74 chr12 93506919 93507084 -27750446 - MER31B LTR ERV1 -314 152 1 1 1298 537 347 96 96 chr12 93507353 93507780 -27749750 + MLT1G3 LTR MaLR 169 595 0 1 1298 4249 92 3 2 chr12 93508182 93508769 -27748761 - L1_Mus3 LINE L1 -3 6635 6048 1 1298 243 0 0 0 chr12 93508996 93509023 -27748507 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1298 1196 48 0 7 chr12 93509023 93509171 -27748359 - B1_Mus2 SINE Alu 0 147 1 1 1298 248 294 0 86 chr12 93509495 93509588 -27747942 - MLT1J2 LTR MaLR -1 447 363 2 1298 2033 175 8 0 chr12 93510112 93510467 -27747063 + Lx2B LINE L1 6643 7000 0 2 1298 272 288 23 99 chr12 93511121 93511278 -27746252 - MIRc SINE MIR -90 186 37 2 1298 903 297 153 12 chr12 93512397 93512819 -27744711 + RMER5 LTR ERV1 43 523 -11 2 1298 210 71 0 0 chr12 93513066 93513094 -27744436 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1298 240 352 14 0 chr12 93513126 93513197 -27744333 - ID4_ SINE ID -1 82 11 2 1298 395 352 8 0 chr12 93513946 93514071 -27743459 - B1F SINE Alu -5 144 19 2 1298 302 203 151 12 chr12 93514149 93514283 -27743247 - Arthur1 DNA Tip100 -239 3708 3554 2 1298 281 301 139 44 chr12 93514321 93514595 -27742935 - Arthur1 DNA Tip100 -3203 744 445 2 1298 1365 150 9 0 chr12 93514606 93514826 -27742704 - Lx2 LINE L1 -1 6996 6775 2 1298 248 75 0 0 chr12 93514826 93514866 -27742664 - Lx2 LINE L1 -353 6644 6605 2 1298 2196 128 33 3 chr12 93514865 93515257 -27742273 + Lx2 LINE L1 5849 6252 -745 2 1298 517 291 52 26 chr12 93515356 93515511 -27742019 + B3A SINE B2 39 197 -1 3 1298 463 351 100 7 chr12 93515844 93516154 -27741376 - Arthur1 DNA Tip100 -3608 339 1 2 1298 2450 245 49 62 chr12 93516543 93517407 -27740123 + RMER1C Other Other 43 1249 -93 3 1298 288 0 0 0 chr12 93517407 93517439 -27740091 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1298 2450 239 52 69 chr12 93517439 93517523 -27740007 + RMER1C Other Other 1250 1337 -5 3 1298 815 248 23 56 chr12 93517528 93517742 -27739788 - B3A SINE B2 -1 215 9 3 1298 728 0 23 0 chr12 93518172 93518259 -27739271 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 3 1298 3011 259 71 18 chr12 93520165 93521262 -27736268 - Lx6 LINE L1 -30 7430 6058 3 1298 853 222 113 20 chr12 93521295 93521543 -27735987 + RMER5 LTR ERV1 261 531 -3 3 1298 755 180 0 0 chr12 93521606 93521728 -27735802 - B3 SINE B2 -92 124 3 3 1298 221 139 23 0 chr12 93522628 93522671 -27734859 + CT-rich Low_complexity Low_complexity 5 48 0 3 1298 450 0 0 0 chr12 93522681 93522731 -27734799 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1298 459 305 79 6 chr12 93523235 93523400 -27734130 - Lx8 LINE L1 -136 7337 7161 4 1298 2251 185 52 25 chr12 93525285 93525800 -27731730 - Lx2B LINE L1 -366 6634 6106 4 1298 589 170 0 24 chr12 93525795 93525938 -27731592 + Lx2B LINE L1 6636 6768 -290 4 1298 191 375 0 0 chr12 93526531 93526603 -27730927 - MIRc SINE MIR -136 132 61 4 1298 632 182 8 0 chr12 93526926 93527058 -27730472 + (TA)n Simple_repeat Simple_repeat 2 134 0 4 1298 1219 264 7 26 chr12 93527092 93527399 -27730131 - Lx5 LINE L1 -93 6957 6657 4 1298 30 27 0 0 chr12 93527408 93527445 -27730085 + AT_rich Low_complexity Low_complexity 1 37 0 4 1298 2243 119 25 0 chr12 93527515 93527834 -27729696 - ORR1A2 LTR MaLR 0 327 1 4 1298 225 0 0 0 chr12 93528131 93528156 -27729374 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1298 352 325 43 104 chr12 93528724 93529023 -27728507 + Tigger13a DNA MER2_type 270 550 -221 4 1298 382 279 81 0 chr12 93529033 93529119 -27728411 + PB1D10 SINE Alu 1 93 -24 4 1298 366 264 171 17 chr12 93530626 93530807 -27726723 - B3 SINE B2 -6 210 2 5 1298 23 0 0 0 chr12 93532131 93532154 -27725376 + AT_rich Low_complexity Low_complexity 1 23 0 5 1298 2738 99 79 5 chr12 93532364 93532780 -27724750 + Lx3B LINE L1 6523 6969 -4 5 1298 198 0 0 0 chr12 93532786 93532808 -27724722 + (TAA)n Simple_repeat Simple_repeat 2 23 0 5 1298 50 0 0 0 chr12 93534645 93534695 -27722835 + AT_rich Low_complexity Low_complexity 1 50 0 5 1298 3668 117 15 0 chr12 93534695 93535227 -27722303 - Lx3A LINE L1 -10 6971 6432 5 1298 3908 115 25 5 chr12 93535227 93535875 -27721655 + Lx3A LINE L1 5759 6419 -562 5 1298 521 77 26 0 chr12 93536046 93536124 -27721406 + (GGAGA)n Simple_repeat Simple_repeat 3 82 0 5 1298 652 170 22 22 chr12 93536314 93536452 -27721078 - Lx5 LINE L1 -3 7047 6910 5 1298 2116 201 43 5 chr12 93536455 93536895 -27720635 - Lx5 LINE L1 -452 6598 6142 5 1298 303 238 87 19 chr12 93537646 93537749 -27719781 - MLT1N2 LTR MaLR -3 559 450 5 1298 1098 109 0 111 chr12 93538070 93538277 -27719253 + B2_Mm2 SINE B2 1 184 -11 5 1298 449 115 305 25 chr12 93538317 93538447 -27719083 + B2_Mm2 SINE B2 47 191 -2 6 1298 24 0 0 0 chr12 93538562 93538586 -27718944 + AT_rich Low_complexity Low_complexity 1 24 0 6 1298 367 329 74 32 chr12 93540050 93540267 -27717263 - B4A SINE B4 -66 226 1 6 1298 198 298 53 80 chr12 93542554 93542667 -27714863 + MIRb SINE MIR 117 226 -42 6 1298 385 328 22 7 chr12 93543074 93543209 -27714321 + B1F1 SINE Alu 5 141 -8 6 1298 231 114 0 0 chr12 93544100 93544135 -27713395 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1298 312 316 182 10 chr12 93544773 93544965 -27712565 - MIRb SINE MIR -28 240 16 6 1298 318 83 0 0 chr12 93545288 93545308 -27712222 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1298 207 0 0 0 chr12 93545308 93545331 -27712199 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1298 318 83 0 0 chr12 93545331 93545358 -27712172 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1298 1187 68 0 0 chr12 93545358 93545505 -27712025 - B1_Mm SINE Alu 0 147 1 7 1298 1154 269 60 62 chr12 93545802 93546170 -27711360 + MTE2a LTR MaLR 11 377 -2 7 1298 3588 206 34 5 chr12 93547266 93548043 -27709487 + Lx2B LINE L1 6155 6953 -47 7 1298 186 43 0 0 chr12 93548068 93548091 -27709439 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1298 7200 16 0 0 chr12 93548304 93549118 -27708412 - L1Md_A LINE L1 -1 6581 5768 7 1298 366 273 117 0 chr12 93549483 93549637 -27707893 + MER58C DNA MER1_type 44 215 0 7 1298 609 14 0 0 chr12 93550739 93550809 -27706721 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1298 751 190 11 11 chr12 93550883 93550912 -27706618 - Lx7 LINE L1 0 7696 7670 7 1298 2779 56 0 8 chr12 93550912 93551272 -27706258 + L1Md_F2 LINE L1 6226 6582 0 7 1298 751 190 11 11 chr12 93551272 93551418 -27706112 - Lx7 LINE L1 -27 7669 7523 7 1298 236 146 0 35 chr12 93553220 93553277 -27704253 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 7 1298 608 310 70 9 chr12 93553349 93553542 -27703988 - B3A SINE B2 -3 213 10 8 1298 984 225 59 27 chr12 93553808 93554027 -27703503 + RLTR42 LTR ERVK 1 226 -13 8 1298 239 344 0 32 chr12 93554315 93554408 -27703122 + MER5A DNA MER1_type 15 104 -85 8 1298 360 0 0 0 chr12 93554832 93554872 -27702658 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1298 205 291 69 11 chr12 93555713 93555800 -27701730 - MIR SINE MIR -64 144 53 8 1298 461 238 156 0 chr12 93556168 93556290 -27701240 - B1F1 SINE Alu 0 149 9 8 1298 363 96 0 0 chr12 93557413 93557465 -27700065 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1298 204 303 29 29 chr12 93557596 93557664 -27699866 - L2b LINE L2 0 3375 3308 8 1298 339 393 9 0 chr12 93557887 93557999 -27699531 - PB1D7 SINE Alu -7 113 1 8 1298 575 249 121 32 chr12 93558008 93558057 -27699473 - L1MB3 LINE L1 -4 6179 6130 8 1298 690 278 23 41 chr12 93558057 93558278 -27699252 - ID_B1 SINE B4 -7 217 1 9 1298 575 249 121 32 chr12 93558278 93558477 -27699053 - L1MB3 LINE L1 -54 6129 5909 8 1298 230 311 14 0 chr12 93558584 93558658 -27698872 - L1MB3 LINE L1 -369 5814 5740 8 1298 312 312 86 7 chr12 93559550 93559689 -27697841 + MER5A DNA MER1_type 40 189 0 8 1298 244 190 0 79 chr12 93559959 93560022 -27697508 + polypurine Low_complexity Low_complexity 4 61 0 9 1298 544 250 18 0 chr12 93560024 93560136 -27697394 + RSINE1 SINE B4 2 115 -50 9 1298 261 342 0 0 chr12 93560153 93560226 -27697304 + C-rich Low_complexity Low_complexity 1 73 0 9 1298 3342 187 16 32 chr12 93560227 93560874 -27696656 + RMER1B Other Other 428 1063 -3 9 1298 687 155 0 0 chr12 93560897 93561052 -27696478 + GA-rich Low_complexity Low_complexity 1 155 0 9 1298 3404 108 123 0 chr12 93562489 93563034 -27694496 - Lx3C LINE L1 -8 6968 6357 9 1298 672 48 0 0 chr12 93563477 93563561 -27693969 + (TG)n Simple_repeat Simple_repeat 1 84 0 9 1298 7317 99 24 5 chr12 93563721 93564782 -27692748 - Lx3_Mus LINE L1 0 7009 5929 9 1298 693 146 0 0 chr12 93564783 93564934 -27692596 + (TATG)n Simple_repeat Simple_repeat 2 152 0 9 1298 7491 82 15 2 chr12 93564960 93565985 -27691545 - L1_Mur1 LINE L1 0 5886 4849 1 1298 11083 94 18 20 chr12 93565985 93567696 -27689834 + L1_Mur1 LINE L1 3155 4861 -1025 1 1298 312 374 52 6 chr12 93568378 93568556 -27688974 - MLT1E1 LTR MaLR -8 646 361 1 1298 252 349 63 78 chr12 93568633 93568838 -27688692 - MLT1E1 LTR MaLR -333 227 26 1 1298 1067 319 142 80 chr12 93568849 93569841 -27687689 - MLT1E1-int LTR MaLR -407 1082 29 1 1298 1265 143 19 9 chr12 93569914 93570126 -27687404 + URR1B DNA MER1_type 7 220 -5 1 1298 735 44 0 0 chr12 93570189 93570280 -27687250 + (GA)n Simple_repeat Simple_repeat 1 91 0 1 1298 280 274 153 78 chr12 93571383 93571743 -27685787 + Kanga2_a DNA Tc2 151 537 -351 1 1298 319 289 133 5 chr12 93571757 93571945 -27685585 + Kanga2_a DNA Tc2 598 809 -79 1 1298 2514 251 41 5 chr12 93571979 93572544 -27684986 + Lx5 LINE L1 6255 6839 -211 1 1298 633 134 0 0 chr12 93572635 93572747 -27684783 + (GA)n Simple_repeat Simple_repeat 1 112 0 1 1298 263 299 68 8 chr12 93573791 93573909 -27683621 + LTR80B LTR ERVL 75 199 -385 1 1298 194 191 21 0 chr12 93574255 93574302 -27683228 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1298 561 181 0 0 chr12 93574301 93574439 -27683091 + GA-rich Low_complexity Low_complexity 1 138 0 1 1298 1295 259 93 39 chr12 93576247 93576633 -27680897 + MTD LTR MaLR 13 419 0 1 1298 6099 39 1 1 chr12 93576667 93577404 -27680126 - L1Md_T LINE L1 0 6582 5846 1 1298 1451 64 0 0 chr12 93577402 93577590 -27679940 + L1Md_T LINE L1 6395 6582 0 1 1298 25596 115 17 28 chr12 93577608 93582140 -27675390 - L1Md_T LINE L1 -1007 4876 409 1 1298 21 36 0 0 chr12 93583040 93583068 -27674462 + AT_rich Low_complexity Low_complexity 1 28 0 1 1298 4229 215 38 13 chr12 93583068 93583911 -27673619 - Lx5 LINE L1 -4 7046 6183 1 1298 938 329 30 45 chr12 93584449 93584920 -27672610 - MLT1C LTR MaLR -3 464 1 1 1299 806 323 46 66 chr12 93586634 93586982 -27670548 + ORR1E LTR MaLR 19 359 0 1 1299 1624 249 55 12 chr12 93586985 93587407 -27670123 + ORR1E-int LTR MaLR 3 442 -1138 1 1299 2025 357 30 30 chr12 93587410 93588225 -27669305 + ORR1E-int LTR MaLR 716 1530 -50 1 1299 375 238 12 0 chr12 93588225 93588309 -27669221 + ORR1E LTR MaLR 4 88 -271 1 1299 525 278 14 130 chr12 93588313 93588520 -27669010 + ORR1E LTR MaLR 197 379 0 1 1299 1177 267 90 61 chr12 93588648 93589191 -27668339 + L1MA10 LINE L1 5765 6323 -11 1 1299 26 0 0 0 chr12 93591559 93591585 -27665945 + AT_rich Low_complexity Low_complexity 1 26 0 1 1299 183 325 100 0 chr12 93591846 93591926 -27665604 + MIR SINE MIR 109 196 -66 1 1299 359 332 98 47 chr12 93591976 93592169 -27665361 - MIRb SINE MIR -26 242 40 1 1299 2612 47 0 3 chr12 93593419 93593741 -27663789 + L1Md_F2 LINE L1 5264 5584 -299 1 1299 7560 72 7 5 chr12 93593750 93594743 -27662787 + L1Md_F2 LINE L1 5588 6582 0 1 1299 245 289 39 13 chr12 93595595 93595672 -27661858 - ID4 SINE ID -3 80 2 1 1299 614 13 0 0 chr12 93596029 93596106 -27661424 + L1Md_A LINE L1 6506 6582 0 1 1299 258 32 0 0 chr12 93596489 93596520 -27661010 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1299 404 106 47 0 chr12 93596943 93597028 -27660502 + GA-rich Low_complexity Low_complexity 1 89 0 1 1299 1189 256 12 30 chr12 93597029 93597359 -27660171 + RMER5 LTR ERV1 202 525 -9 1 1299 195 42 0 0 chr12 93597359 93597383 -27660147 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1299 1306 64 0 0 chr12 93597396 93597569 -27659961 - L1Md_A LINE L1 -1 6581 6409 1 1299 38026 35 0 3 chr12 93597571 93603799 -27653731 - L1Md_T LINE L1 0 6585 275 1 1299 474 65 0 0 chr12 93603868 93603930 -27653600 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1299 509 360 41 15 chr12 93604308 93604720 -27652810 + L1MEb LINE L1 48 470 -5600 1 1299 1092 88 0 33 chr12 93605564 93605716 -27651814 + B1_Mm SINE Alu 1 147 0 1 1299 230 0 33 0 chr12 93605716 93605746 -27651784 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 1 1299 6630 102 34 23 chr12 93606091 93607209 -27650321 - L1_Mus3 LINE L1 -1 6637 5495 1 1299 1886 148 9 3 chr12 93607210 93607536 -27649994 + L1_Mur2 LINE L1 5035 5362 -515 1 1299 28569 92 38 9 chr12 93607546 93612711 -27644819 + L1Md_F2 LINE L1 238 5586 -297 1 1299 7411 80 5 3 chr12 93612711 93613703 -27643827 + L1Md_F2 LINE L1 5587 6580 -2 1 1299 910 182 66 4 chr12 93613710 93613916 -27643614 + L1_Mm LINE L1 5360 5602 -2280 1 1299 566 277 82 29 chr12 93615263 93615471 -27642059 - MLT1C LTR MaLR -17 450 232 1 1299 374 20 40 0 chr12 93615741 93615791 -27641739 + (TATAA)n Simple_repeat Simple_repeat 1 52 0 1 1299 180 0 0 0 chr12 93615941 93615961 -27641569 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1299 23 33 0 0 chr12 93616023 93616053 -27641477 + AT_rich Low_complexity Low_complexity 1 30 0 1 1299 278 329 35 0 chr12 93616081 93616166 -27641364 - PB1D7 SINE Alu -10 110 23 1 1299 446 354 18 35 chr12 93616091 93616261 -27641269 - ID_B1 SINE B4 -46 178 12 1 1299 450 168 37 0 chr12 93616347 93616508 -27641022 + GA-rich Low_complexity Low_complexity 2 168 0 1 1299 360 0 0 0 chr12 93616629 93616669 -27640861 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1299 254 279 92 16 chr12 93616988 93617115 -27640415 - MIRb SINE MIR -92 176 37 1 1299 254 354 80 58 chr12 93617159 93617297 -27640233 + MER5A DNA MER1_type 7 147 -42 1 1299 231 36 0 0 chr12 93617365 93617393 -27640137 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1299 275 338 36 67 chr12 93618223 93618388 -27639142 - MLT1I LTR MaLR 0 411 252 1 1299 8358 143 49 63 chr12 93618430 93620523 -27637007 - Lx4B LINE L1 -863 6195 4126 1 1299 1912 162 3 3 chr12 93620532 93620872 -27636658 + L1_Mur2 LINE L1 1502 1841 -4036 1 1299 624 294 36 18 chr12 93620873 93621039 -27636491 + MTE2a LTR MaLR 200 368 -11 1 1299 282 382 32 7 chr12 93621992 93622134 -27635396 + MIRc SINE MIR 44 191 -77 1 1299 306 0 0 0 chr12 93623526 93623560 -27633970 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1299 426 20 0 0 chr12 93623560 93623610 -27633920 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1299 329 326 80 55 chr12 93624126 93624327 -27633203 + MLT1D LTR MaLR 16 221 -284 1 1299 358 309 129 37 chr12 93624350 93624668 -27632862 + MTEa LTR MaLR 1 379 0 1 1299 511 236 146 35 chr12 93624692 93624863 -27632667 + MLT1D LTR MaLR 307 496 -9 1 1299 746 278 30 102 chr12 93625508 93625841 -27631689 - Lx8 LINE L1 0 7473 7165 1 1299 1721 247 178 54 chr12 93625849 93626663 -27630867 + RMER17B LTR ERVK 1 915 -43 1 1299 1549 301 69 39 chr12 93626696 93626831 -27630699 - Lx8 LINE L1 -324 7149 7008 1 1299 222 62 0 0 chr12 93626831 93626863 -27630667 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1299 1549 301 69 39 chr12 93626863 93627480 -27630050 - Lx8 LINE L1 -466 7007 6374 1 1299 342 339 17 8 chr12 93627639 93627758 -27629772 + PB1 SINE Alu 6 125 -2 1 1299 313 402 0 0 chr12 93628816 93628928 -27628602 - PB1D10 SINE Alu -5 112 1 1 1299 198 118 0 0 chr12 93629056 93629090 -27628440 + (CATA)n Simple_repeat Simple_repeat 4 37 0 1 1299 375 327 25 19 chr12 93630522 93630681 -27626849 - Lx8 LINE L1 -362 7111 6952 1 1299 246 194 0 0 chr12 93630729 93630791 -27626739 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1299 806 259 4 35 chr12 93630791 93631023 -27626507 - Lx8 LINE L1 -519 6954 6730 1 1299 679 287 112 35 chr12 93631017 93631302 -27626228 + Lx8 LINE L1 7159 7465 -8 1 1299 487 309 92 10 chr12 93632012 93632208 -27625322 - B3 SINE B2 -4 212 1 1 1299 1728 128 83 0 chr12 93632297 93632586 -27624944 + RLTR9A LTR ERVK 1 313 -55 1 1299 8902 4 0 0 chr12 93632586 93634262 -27623268 - L1Md_A LINE L1 -14 6568 4893 1 1299 525 141 0 0 chr12 93634262 93634347 -27623183 + RLTR9A LTR ERVK 284 368 0 1 1299 283 268 10 58 chr12 93635911 93636014 -27621516 - MLT1A1 LTR MaLR 0 408 311 1 1299 229 337 75 80 chr12 93636586 93636786 -27620744 - MLT1A1 LTR MaLR -209 199 1 1 1299 692 281 170 55 chr12 93636797 93637144 -27620386 - MLT1A1-int LTR MaLR -11 1724 1338 1 1299 243 217 0 0 chr12 93637384 93637444 -27620086 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1299 207 0 0 0 chr12 93637446 93637469 -27620061 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1299 273 330 30 89 chr12 93637679 93637882 -27619648 + ORR1E LTR MaLR 2 192 -167 1 1299 334 296 0 0 chr12 93638372 93638443 -27619087 - ID4_ SINE ID -7 76 6 1 1299 319 277 184 26 chr12 93638588 93638740 -27618790 - HAL1-3A_ME LINE L1 -669 2189 2014 1 1299 997 131 72 72 chr12 93640091 93640313 -27617217 - Lx3A LINE L1 -2 6979 6758 1 1299 495 178 0 0 chr12 93640317 93640418 -27617112 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1299 4209 107 14 5 chr12 93640465 93641102 -27616428 - Lx3A LINE L1 -213 6768 6126 1 1299 255 125 0 0 chr12 93641106 93641146 -27616384 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1 1299 3937 158 32 8 chr12 93641191 93641899 -27615631 + Lx3C LINE L1 6250 6974 -2 1 1299 183 129 0 0 chr12 93641937 93641968 -27615562 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1299 657 0 0 0 chr12 93642224 93642297 -27615233 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1299 534 328 126 0 chr12 93642325 93642508 -27615022 - B4A SINE B4 0 292 87 1 1299 675 0 0 0 chr12 93642553 93642628 -27614902 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 1 1299 305 293 12 0 chr12 93645008 93645090 -27612440 - RMER15 LTR ERVL -17 558 476 1 1299 1134 271 84 29 chr12 93645093 93645476 -27612054 + Lx8 LINE L1 6835 7238 -235 1 1299 9060 103 13 18 chr12 93646003 93647862 -27609668 + Lx3B LINE L1 5090 6936 -37 1 1299 640 328 21 8 chr12 93648936 93649170 -27608360 + MLT2C1 LTR ERVL 5 241 -156 1 1299 9143 48 11 1 chr12 93649199 93651066 -27606464 - L1Md_F2 LINE L1 0 6582 4696 1 1299 5988 83 25 0 chr12 93651050 93651907 -27605623 - L1Md_F2 LINE L1 -2656 3227 2350 1 1299 241 253 23 57 chr12 93652037 93652125 -27605405 + MER74A LTR ERVL 154 238 -320 1 1299 521 302 46 10 chr12 93652129 93652323 -27605207 - MLT1A1 LTR MaLR 0 408 208 1 1299 443 329 84 34 chr12 93652456 93652695 -27604835 + MER74A LTR ERVL 245 495 -63 1 1299 216 0 0 0 chr12 93653166 93653190 -27604340 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1299 207 189 0 0 chr12 93653209 93653262 -27604268 + CT-rich Low_complexity Low_complexity 1 53 0 1 1299 293 283 115 16 chr12 93653296 93653418 -27604112 - B1F1 SINE Alu -10 139 6 1 1299 345 345 89 10 chr12 93653751 93653953 -27603577 - LTR40b LTR ERVL 0 462 245 1 1299 821 208 13 0 chr12 93653978 93654132 -27603398 + URR1B DNA MER1_type 5 160 -65 1 1299 3531 220 94 14 chr12 93654516 93655306 -27602224 - Lx5 LINE L1 0 7050 6198 1 1299 22 70 0 0 chr12 93655408 93655451 -27602079 + AT_rich Low_complexity Low_complexity 1 43 0 1 1299 1433 63 34 0 chr12 93655626 93655832 -27601698 - L1Md_F3 LINE L1 0 6584 6372 1 1299 1938 209 45 10 chr12 93655939 93656336 -27601194 + MTC LTR MaLR 3 413 -8 1 1299 2859 89 20 0 chr12 93656410 93656803 -27600727 - L1_Mus3 LINE L1 -2 6636 6236 2 1299 366 23 0 0 chr12 93657703 93657746 -27599784 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1299 724 50 20 0 chr12 93657903 93658004 -27599526 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 2 1299 207 333 0 22 chr12 93658148 93658240 -27599290 + (TATATG)n Simple_repeat Simple_repeat 2 91 0 2 1299 1890 173 58 0 chr12 93658299 93658645 -27598885 + ORR1C2 LTR MaLR 19 384 0 2 1299 582 294 138 14 chr12 93658645 93658858 -27598672 - B4A SINE B4 -39 253 14 2 1299 1124 68 7 0 chr12 93659743 93659889 -27597641 + B1_Mus1 SINE Alu 1 147 -1 2 1299 582 131 0 0 chr12 93659889 93659988 -27597542 + (GAAA)n Simple_repeat Simple_repeat 1 99 0 2 1299 1309 80 27 5 chr12 93660128 93660316 -27597214 - B2_Mm1a SINE B2 0 193 2 2 1299 10430 77 38 8 chr12 93660639 93661924 -27595606 - L1_Mus2 LINE L1 -1 6565 5239 2 1299 4085 39 55 0 chr12 93661924 93662435 -27595095 - L1Md_F3 LINE L1 -14 6570 6032 2 1299 10430 102 26 17 chr12 93662435 93663416 -27594114 - L1_Mus2 LINE L1 -645 5238 4263 2 1299 222 91 0 0 chr12 93665056 93665089 -27592441 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1299 28 79 0 0 chr12 93666026 93666089 -27591441 + AT_rich Low_complexity Low_complexity 1 63 0 2 1299 517 127 25 0 chr12 93666346 93666425 -27591105 + MTC LTR MaLR 1 81 -340 2 1299 25198 142 32 6 chr12 93666425 93672016 -27585514 + L1_Mus3 LINE L1 892 6638 0 2 1299 1199 221 112 16 chr12 93672016 93672330 -27585200 + MTC LTR MaLR 69 411 -10 2 1299 2121 97 7 0 chr12 93672361 93672650 -27584880 - L1_Mus4 LINE L1 -258 6378 6088 2 1299 288 277 114 63 chr12 93672951 93673109 -27584421 - MLT1D LTR MaLR -313 192 27 2 1299 404 316 36 36 chr12 93673431 93673625 -27583905 - MIR SINE MIR 0 262 69 2 1299 411 280 11 33 chr12 93673793 93673974 -27583556 + GA-rich Low_complexity Low_complexity 1 177 0 2 1299 22 0 0 0 chr12 93674503 93674525 -27583005 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 324 48 0 0 chr12 93674719 93674761 -27582769 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1299 216 0 0 0 chr12 93675104 93675128 -27582402 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1299 846 257 117 12 chr12 93675512 93675752 -27581778 - Lx7 LINE L1 -27 7669 7405 2 1299 600 147 0 0 chr12 93675757 93675852 -27581678 - ORR1B1 LTR MaLR -8 386 292 2 1299 1757 108 0 0 chr12 93675854 93676112 -27581418 + L1_Mus4 LINE L1 6373 6630 -6 2 1299 279 244 56 34 chr12 93676366 93676455 -27581075 + MLT1A1 LTR MaLR 307 397 -11 2 1299 1877 151 0 12 chr12 93676629 93676952 -27580578 - Lx LINE L1 -4 6650 6332 2 1299 308 313 216 15 chr12 93677680 93677949 -27579581 - LTR52 LTR ERVL -98 323 1 2 1299 188 200 24 48 chr12 93678269 93678311 -27579219 - L2 LINE L2 -3149 270 230 2 1299 7297 63 14 0 chr12 93678424 93679357 -27578173 - L1_Mus1 LINE L1 0 6567 5644 2 1299 2178 115 3 9 chr12 93679535 93679868 -27577662 - L1_Mus4 LINE L1 0 6636 6306 2 1299 22 0 0 0 chr12 93680260 93680282 -27577248 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 8425 128 25 11 chr12 93680282 93681740 -27575790 - Lx3A LINE L1 -3 6978 5505 2 1299 8300 38 0 1 chr12 93681843 93682840 -27574690 + L1Md_T LINE L1 5587 6582 0 2 1299 246 32 0 0 chr12 93683103 93683134 -27574396 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1299 21 57 0 0 chr12 93683386 93683421 -27574109 + AT_rich Low_complexity Low_complexity 1 35 0 2 1299 1481 279 67 51 chr12 93683473 93683808 -27573722 + Lx9 LINE L1 6775 7125 -519 2 1299 1344 82 27 0 chr12 93683808 93683992 -27573538 + B2_Mm2 SINE B2 1 189 -6 2 1299 1481 279 67 51 chr12 93683992 93684220 -27573310 + Lx9 LINE L1 7126 7347 -297 2 1299 282 73 0 0 chr12 93684247 93684288 -27573242 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 2 1299 2666 151 20 63 chr12 93684304 93684847 -27572683 + RLTR11A2 LTR ERVK 8 527 0 2 1299 227 140 20 0 chr12 93685662 93685712 -27571818 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1299 209 111 0 43 chr12 93685805 93685852 -27571678 + A-rich Low_complexity Low_complexity 2 46 0 2 1299 436 338 64 15 chr12 93687162 93687366 -27570164 + MLT1H1 LTR MaLR 1 214 -341 2 1299 22 0 0 0 chr12 93687462 93687484 -27570046 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 604 337 50 62 chr12 93687515 93687835 -27569695 - MER74A LTR ERVL -109 449 134 2 1299 531 0 0 0 chr12 93687852 93687911 -27569619 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2 1299 1073 279 25 46 chr12 93688297 93688433 -27569097 - MTE2b LTR MaLR -59 320 185 2 1299 342 0 0 0 chr12 93688433 93688471 -27569059 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1299 1073 279 25 46 chr12 93688471 93688661 -27568869 - MTE2b LTR MaLR -195 184 1 2 1299 734 238 83 32 chr12 93688775 93688992 -27568538 - MTE2a LTR MaLR -2 377 150 2 1299 448 323 113 0 chr12 93689093 93689217 -27568313 + B3A SINE B2 38 175 -23 2 1299 411 21 0 0 chr12 93689431 93689479 -27568051 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1299 229 325 16 49 chr12 93690341 93690464 -27567066 - MIR SINE MIR -5 257 139 2 1299 5348 209 61 13 chr12 93691194 93692325 -27565205 - Lx5 LINE L1 -36 7014 5830 2 1299 3365 122 35 25 chr12 93693106 93693676 -27563854 + Lx2 LINE L1 6403 6978 -19 2 1299 200 122 24 0 chr12 93693682 93693723 -27563807 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 2 1299 21 36 0 0 chr12 93694531 93694559 -27562971 + AT_rich Low_complexity Low_complexity 1 28 0 2 1299 222 164 110 0 chr12 93694902 93694975 -27562555 + (TGAA)n Simple_repeat Simple_repeat 4 84 0 2 1299 2769 186 24 8 chr12 93695580 93696088 -27561442 + RMER20A LTR ERVK 1 516 0 2 1299 387 327 84 93 chr12 93696698 93697032 -27560498 + MTEa LTR MaLR 6 336 -43 2 1299 510 347 51 42 chr12 93698545 93698879 -27558651 + Lx9 LINE L1 7036 7372 -272 2 1299 324 0 0 0 chr12 93699205 93699241 -27558289 + (CAAAC)n Simple_repeat Simple_repeat 4 39 0 2 1299 314 296 75 30 chr12 93699319 93699528 -27558002 + LTR33 LTR ERVL 260 489 -42 2 1299 198 0 0 0 chr12 93699639 93699661 -27557869 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1299 303 28 0 0 chr12 93699877 93699913 -27557617 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1299 728 78 0 0 chr12 93700556 93700658 -27556872 - BC1_Mm scRNA scRNA -50 102 1 2 1299 251 0 59 0 chr12 93701074 93701108 -27556422 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 2 1299 189 0 0 0 chr12 93701939 93701960 -27555570 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 2 1299 27 0 0 0 chr12 93704787 93704814 -27552716 + AT_rich Low_complexity Low_complexity 1 27 0 2 1299 942 178 29 6 chr12 93704951 93705126 -27552404 - Lx3A LINE L1 0 6981 6803 2 1299 534 67 0 0 chr12 93705128 93705203 -27552327 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1299 25 0 0 0 chr12 93705886 93705911 -27551619 + AT_rich Low_complexity Low_complexity 1 25 0 2 1299 321 79 123 31 chr12 93706585 93706650 -27550880 + RMER4B LTR ERVK 1 71 -514 2 1299 1576 162 186 9 chr12 93706658 93707007 -27550523 + RMER4B LTR ERVK 175 585 0 2 1299 570 296 58 44 chr12 93707207 93707550 -27549980 - L1MC LINE L1 -2273 3873 3526 2 1299 22 0 0 0 chr12 93708359 93708381 -27549149 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 21 36 0 0 chr12 93708530 93708558 -27548972 + AT_rich Low_complexity Low_complexity 1 28 0 2 1299 941 167 42 5 chr12 93708560 93708753 -27548777 - Lx3A LINE L1 -5 6976 6777 2 1299 540 298 41 92 chr12 93708783 93708979 -27548551 + B3 SINE B2 4 189 -27 2 1299 432 0 0 0 chr12 93709343 93709391 -27548139 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1299 3481 36 0 12 chr12 93710398 93710823 -27546707 + L1Md_F2 LINE L1 6151 6570 -12 2 1299 726 12 0 0 chr12 93710834 93710917 -27546613 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 2 1299 2258 222 55 25 chr12 93711068 93711557 -27545973 - Lx5 LINE L1 -1 7049 6546 2 1299 232 194 31 31 chr12 93712740 93712868 -27544662 + CT-rich Low_complexity Low_complexity 2 129 0 2 1299 539 259 54 78 chr12 93712872 93713077 -27544453 + RMER10B LTR ERVL 195 394 -4 2 1299 462 306 47 42 chr12 93714650 93714841 -27542689 - B3A SINE B2 -5 193 2 2 1299 234 0 0 0 chr12 93715034 93715060 -27542470 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 2 1299 357 188 0 0 chr12 93715068 93715153 -27542377 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 2 1299 207 184 0 0 chr12 93715231 93715269 -27542261 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 1299 1338 243 120 16 chr12 93715376 93715752 -27541778 + MTD LTR MaLR 1 415 -4 2 162 3764 106 3 16 chr12 93716401 93716975 -27540555 + L1_Mus3 LINE L1 6071 6637 -1 2 1300 979 143 0 13 chr12 93717037 93717186 -27540344 - B1_Mus2 SINE Alu 0 147 1 2 1300 423 0 0 0 chr12 93717821 93717868 -27539662 + (CAAAC)n Simple_repeat Simple_repeat 1 47 0 2 1300 19509 140 13 26 chr12 93718571 93720989 -27536541 + L1_Mus3 LINE L1 2532 4923 -960 2 1300 1523 99 14 0 chr12 93720989 93721211 -27536319 - L1_Mus2 LINE L1 -1 6565 6341 2 1300 19509 122 45 13 chr12 93721211 93722887 -27534643 + L1_Mus3 LINE L1 4924 6630 -8 2 1300 243 277 0 30 chr12 93724224 93724291 -27533239 + MER57D LTR ERV1 152 216 -195 2 1300 25 31 0 0 chr12 93724730 93724762 -27532768 + AT_rich Low_complexity Low_complexity 1 32 0 2 1300 288 0 0 0 chr12 93725885 93725917 -27531613 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1300 501 240 0 17 chr12 93725929 93726107 -27531423 + (TA)n Simple_repeat Simple_repeat 2 176 0 2 1300 315 191 0 0 chr12 93726117 93726185 -27531345 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1300 225 324 122 22 chr12 93726211 93726350 -27531180 + L1_Mur3 LINE L1 4942 5094 -786 2 1300 914 341 66 24 chr12 93726365 93726939 -27530591 + Lx8 LINE L1 6871 7468 -5 2 1300 472 316 124 8 chr12 93726995 93727267 -27530263 + MTE-int LTR MaLR 890 1189 -391 3 1300 316 152 63 0 chr12 93727451 93727530 -27530000 - L1Md_F3 LINE L1 0 6584 6501 3 1300 4821 114 34 29 chr12 93727535 93728301 -27529229 - Lx LINE L1 -13 6641 5872 3 1300 6252 172 52 62 chr12 93728302 93729890 -27527640 + Lx4B LINE L1 5501 7054 -4 3 1300 22 35 0 0 chr12 93729897 93729926 -27527604 + AT_rich Low_complexity Low_complexity 1 29 0 3 1300 222 156 0 22 chr12 93730031 93730077 -27527453 + T-rich Low_complexity Low_complexity 2 46 0 3 1300 772 285 80 18 chr12 93730281 93730617 -27526913 + L1M2 LINE L1 4610 4966 -1177 3 1300 764 241 60 99 chr12 93731259 93731722 -27525808 + RMER2 LTR ERV1 1 540 -27 3 1300 728 295 64 46 chr12 93731968 93732022 -27525508 + B4 SINE B4 6 57 -235 3 1300 3936 162 12 35 chr12 93732022 93732796 -27524734 + RMER6A LTR ERVK 1 756 0 3 1300 728 295 64 46 chr12 93732796 93733022 -27524508 + B4 SINE B4 58 291 -1 3 1300 908 248 53 30 chr12 93733281 93733543 -27523987 - Lx9 LINE L1 -179 7465 7198 3 1300 260 236 84 9 chr12 93733542 93733649 -27523881 + Lx9 LINE L1 7508 7622 -22 3 1300 4796 59 14 12 chr12 93735084 93735732 -27521798 - L1Md_F2 LINE L1 0 6582 5934 3 1300 232 180 39 20 chr12 93736210 93736261 -27521269 - Lx7 LINE L1 -1794 5902 5851 3 1300 917 262 4 4 chr12 93736275 93736516 -27521014 + L1_Rod LINE L1 5550 5790 -57 3 1300 261 269 0 0 chr12 93736569 93736618 -27520912 + T-rich Low_complexity Low_complexity 45 93 0 3 1300 1100 62 7 27 chr12 93736618 93736766 -27520764 - B1_Mus1 SINE Alu 0 148 4 3 1300 261 269 0 0 chr12 93736766 93736809 -27520721 + T-rich Low_complexity Low_complexity 2 44 0 3 1300 236 345 39 85 chr12 93737180 93737310 -27520220 + LTR33B LTR ERVL 230 353 -150 3 1300 22 0 0 0 chr12 93737962 93737984 -27519546 + AT_rich Low_complexity Low_complexity 1 22 0 3 1300 253 345 8 63 chr12 93738321 93738448 -27519082 - MLT1B LTR MaLR -20 370 251 3 1300 270 0 0 0 chr12 93738640 93738670 -27518860 + (CTCA)n Simple_repeat Simple_repeat 1 30 0 3 1300 5018 126 3 31 chr12 93738861 93739707 -27517823 + Lx3_Mus LINE L1 6179 7001 -8 3 1300 417 39 0 0 chr12 93739818 93739869 -27517661 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1300 859 333 7 68 chr12 93740008 93740096 -27517434 - B4A SINE B4 -4 288 214 3 1300 387 0 0 0 chr12 93740096 93740139 -27517391 + (TTA)n Simple_repeat Simple_repeat 1 43 0 3 1300 859 333 7 68 chr12 93740139 93740346 -27517184 - B4A SINE B4 -79 213 11 3 1300 4225 190 64 20 chr12 93741745 93742786 -27514744 - L1_Mur3 LINE L1 -728 5456 4341 3 1300 470 204 146 0 chr12 93742796 93742933 -27514597 - RLTR12A LTR ERVK -15 553 397 3 1300 22173 76 3 1 chr12 93742933 93746000 -27511530 + L1Md_F2 LINE L1 2851 5924 -658 3 1300 3957 65 13 11 chr12 93746005 93746535 -27510995 + L1Md_F2 LINE L1 6052 6582 0 3 1300 4431 96 42 6 chr12 93746534 93747177 -27510353 + L1Md_F2 LINE L1 5917 6582 0 3 1300 311 246 0 0 chr12 93747562 93747631 -27509899 + MYSERV6-int LTR ERVK 55 123 -8836 3 1300 697 203 14 7 chr12 93748028 93748172 -27509358 + MYSERV-int LTR ERVK 3957 4101 -2449 3 1300 1990 306 51 51 chr12 93748198 93749134 -27508396 + MYSERV-int LTR ERVK 4202 5137 -1413 3 1300 556 328 5 22 chr12 93749134 93749318 -27508212 + RMER4A LTR ERVK 259 439 -27 3 1300 4988 221 25 18 chr12 93749321 93750547 -27506983 + MYSERV-int LTR ERVK 5316 6550 0 3 1300 807 272 54 27 chr12 93750548 93750881 -27506649 + RLTR15 LTR ERVK 2 343 -16 3 1300 350 57 0 19 chr12 93750899 93750953 -27506577 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 3 1300 306 0 0 0 chr12 93751526 93751560 -27505970 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1300 1379 92 0 0 chr12 93751575 93751760 -27505770 - MusHAL1 LINE L1 -147 2565 2381 3 1300 216 0 0 0 chr12 93751870 93751894 -27505636 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1300 184 77 51 0 chr12 93752036 93752075 -27505455 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 3 1300 392 253 0 13 chr12 93752130 93752206 -27505324 - RSINE1 SINE B4 -35 130 56 3 1300 290 202 23 35 chr12 93753135 93753222 -27504308 + L1_Rod LINE L1 5146 5231 -616 3 1300 228 240 0 128 chr12 93753366 93753452 -27504078 + RLTR13D3 LTR ERVK 756 830 -284 3 1300 434 324 58 14 chr12 93753436 93753574 -27503956 - ID_B1 SINE B4 0 224 81 3 1300 225 0 0 0 chr12 93754175 93754200 -27503330 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1300 558 98 0 0 chr12 93754337 93754419 -27503111 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1300 1391 221 53 162 chr12 93754422 93754892 -27502638 - MTC LTR MaLR 0 421 3 3 1300 543 56 0 0 chr12 93754893 93754964 -27502566 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1300 3091 251 65 7 chr12 93756496 93757265 -27500265 + Lx6 LINE L1 6478 7291 -169 3 1300 405 295 57 6 chr12 93757531 93757688 -27499842 + LTR40b LTR ERVL 4 168 -294 3 1300 835 63 16 0 chr12 93757754 93757880 -27499650 - L1Md_T LINE L1 0 6582 6455 3 1300 263 401 107 80 chr12 93758996 93759221 -27498309 - LTR81A LTR ERV1? -228 1122 892 3 1300 463 298 112 52 chr12 93759247 93759630 -27497900 - Lx9 LINE L1 -228 7416 7011 3 1300 2138 161 5 75 chr12 93759631 93760055 -27497475 + ORR1B1 LTR MaLR 1 394 0 3 1300 7359 189 73 82 chr12 93760055 93762036 -27495494 + ORR1B1-int LTR MaLR 1 1963 0 3 1300 1771 154 70 78 chr12 93762042 93762416 -27495114 + ORR1B1 LTR MaLR 17 387 -7 3 1300 2652 41 3 17 chr12 93762422 93762767 -27494763 - ORR1A0 LTR MaLR 0 346 7 3 1300 1895 68 19 11 chr12 93763256 93763522 -27494008 - L1_Mus1 LINE L1 0 6567 6300 3 1300 21 82 0 0 chr12 93763724 93763773 -27493757 + AT_rich Low_complexity Low_complexity 1 49 0 3 1300 965 285 23 41 chr12 93764345 93764689 -27492841 - L1MA9 LINE L1 -2 6310 5973 3 1300 348 278 79 40 chr12 93764866 93765068 -27492462 - L1M4 LINE L1 -1856 4284 4075 3 1300 547 312 157 6 chr12 93765121 93765472 -27492058 - L1M4 LINE L1 -2786 3360 2957 3 1300 1165 285 106 46 chr12 93765472 93765862 -27491668 - Lx8 LINE L1 -626 6847 6428 3 1300 261 0 0 0 chr12 93765862 93765891 -27491639 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 3 1300 1165 285 106 46 chr12 93765891 93765982 -27491548 - Lx8 LINE L1 -1046 6427 6337 3 1300 228 338 0 0 chr12 93765993 93766064 -27491466 - Lx8 LINE L1 -1206 6267 6197 3 1300 266 296 27 18 chr12 93766344 93766454 -27491076 - Lx7 LINE L1 -1790 5906 5796 3 1300 6335 181 15 14 chr12 93766454 93767649 -27489881 - Lx2B LINE L1 0 7000 5805 3 1300 398 354 78 18 chr12 93767961 93768128 -27489402 + B3A SINE B2 6 182 -16 3 1300 411 21 0 0 chr12 93768133 93768181 -27489349 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1300 264 278 51 97 chr12 93769566 93769741 -27487789 + MLT1D LTR MaLR 46 212 -293 3 1300 705 66 0 0 chr12 93769914 93770005 -27487525 - L1_Mur1 LINE L1 -2898 2988 2898 3 1300 8460 101 55 7 chr12 93770005 93770759 -27486771 + Lx3_Mus LINE L1 5662 6481 -528 3 1300 2931 64 5 32 chr12 93770759 93771160 -27486370 + RLTR10 LTR ERVK 1 390 0 3 1300 8460 101 55 7 chr12 93771160 93771687 -27485843 + Lx3_Mus LINE L1 6482 7005 -4 3 1300 25 31 0 0 chr12 93771880 93771912 -27485618 + AT_rich Low_complexity Low_complexity 1 32 0 3 1300 268 333 13 0 chr12 93771912 93771990 -27485540 - ID4 SINE ID -3 80 2 3 1300 348 240 0 0 chr12 93771995 93772116 -27485414 + (TTGG)n Simple_repeat Simple_repeat 2 122 0 3 1300 200 213 21 0 chr12 93772220 93772267 -27485263 + (CCAA)n Simple_repeat Simple_repeat 1 48 0 3 1300 204 402 92 25 chr12 93772501 93772621 -27484909 - L2a LINE L2 -360 3066 2939 3 1300 240 323 78 66 chr12 93772777 93773019 -27484511 + RLTR20A LTR ERVK 23 267 -274 3 1300 246 273 39 29 chr12 93773506 93773608 -27483922 - L1M7 LINE L1 -4518 1700 1598 3 1300 4478 74 0 5 chr12 93773836 93774432 -27483098 - L1Md_F2 LINE L1 -13 6569 5977 3 1300 329 261 70 0 chr12 93774432 93774547 -27482983 - L1MA4 LINE L1 -388 5912 5790 3 1300 774 269 19 9 chr12 93774548 93774758 -27482772 + B3 SINE B2 1 212 -4 3 1300 290 253 101 0 chr12 93774772 93774851 -27482679 - L1MA4 LINE L1 -507 5793 5707 3 1300 297 362 40 13 chr12 93777213 93777364 -27480166 + MER115 DNA Tip100 465 619 -74 3 1300 1521 254 112 71 chr12 93778566 93778736 -27478794 + RLTR40 LTR ERVK 21 191 -626 3 1300 1053 254 110 31 chr12 93778736 93779090 -27478440 - ORR1C2 LTR MaLR 0 384 3 3 1300 1521 254 112 71 chr12 93779090 93779623 -27477907 + RLTR40 LTR ERVK 192 753 -64 3 1300 192 40 0 0 chr12 93780635 93780660 -27476870 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1300 26 0 0 0 chr12 93780713 93780739 -27476791 + AT_rich Low_complexity Low_complexity 1 26 0 3 1300 5265 189 94 8 chr12 93781004 93782069 -27475461 - Lx5 LINE L1 -2 7048 5893 3 1300 456 289 71 37 chr12 93782291 93782599 -27474931 - Lx8 LINE L1 -1673 5971 5654 3 1300 669 331 5 0 chr12 93782877 93783061 -27474469 - B3A SINE B2 -1 197 13 3 1300 1409 210 55 7 chr12 93784116 93784409 -27473121 - MTD LTR MaLR -112 307 1 3 1300 2695 72 3 19 chr12 93784570 93784936 -27472594 + L1_Mus1 LINE L1 6208 6567 0 3 1300 1442 181 38 67 chr12 93785119 93785144 -27472386 - L1_Mur3 LINE L1 -3789 2091 2069 3 1300 297 0 0 0 chr12 93785144 93785177 -27472353 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1300 1442 181 38 67 chr12 93785177 93785200 -27472330 - L1_Mur3 LINE L1 -3812 2068 2057 3 1300 678 58 0 0 chr12 93785200 93785287 -27472243 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1300 1442 181 38 67 chr12 93785287 93785610 -27471920 - L1_Mur3 LINE L1 -3824 2056 1730 3 1300 727 341 57 0 chr12 93785647 93785946 -27471584 + MER2 DNA MER2_type 12 327 -18 3 1300 311 306 55 37 chr12 93786072 93786235 -27471295 + L1M1 LINE L1 5677 5842 -461 3 1300 330 80 0 0 chr12 93786447 93786497 -27471033 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1300 420 207 24 0 chr12 93786575 93786657 -27470873 - MT2A LTR ERVL -355 178 95 3 1300 23 33 0 0 chr12 93786678 93786708 -27470822 + AT_rich Low_complexity Low_complexity 1 30 0 3 1300 695 306 82 84 chr12 93786741 93787368 -27470162 + L1M4b LINE L1 2160 3147 -4187 3 1300 4828 196 27 22 chr12 93787368 93788026 -27469504 + Lx3C LINE L1 5957 6610 -366 3 1300 5518 114 37 106 chr12 93788026 93789082 -27468448 + RLTR13C1 LTR ERVK 1 983 0 3 1300 4828 196 27 22 chr12 93789082 93789433 -27468097 + Lx3C LINE L1 6611 6971 -5 3 1300 695 312 78 67 chr12 93789433 93789781 -27467749 + L1M4b LINE L1 2852 3329 -4005 3 1300 522 279 72 89 chr12 93789788 93790128 -27467402 - MT2B LTR ERVL -2 531 292 3 1300 5147 100 50 3 chr12 93790551 93791314 -27466216 - L1_Mus4 LINE L1 -2 6634 5836 3 1300 8078 147 5 0 chr12 93791314 93792623 -27464907 + L1_Mus4 LINE L1 4549 5864 -19 3 1300 366 238 8 103 chr12 93792626 93792743 -27464787 - MT2A LTR ERVL -427 106 1 3 1300 253 301 105 9 chr12 93792953 93793067 -27464463 - ORR1E LTR MaLR -234 125 1 3 1300 908 191 107 5 chr12 93793652 93793857 -27463673 + URR1A DNA MER1_type 1 226 0 4 1300 263 281 86 26 chr12 93793865 93793982 -27463548 + L1M4 LINE L1 4551 4674 -1472 4 1300 591 347 63 108 chr12 93794837 93795234 -27462296 + MTE2b LTR MaLR 1 379 0 4 1300 181 346 79 0 chr12 93795770 93795871 -27461659 - MIR SINE MIR -67 141 33 4 1300 183 129 0 0 chr12 93796713 93796744 -27460786 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1300 504 0 0 0 chr12 93796837 93796893 -27460637 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1300 1887 199 62 17 chr12 93797339 93797401 -27460129 - MTC LTR MaLR 0 421 361 4 1300 1729 156 3 130 chr12 93797401 93797778 -27459752 + ORR1A4 LTR MaLR 1 329 0 4 1300 1887 199 62 17 chr12 93797778 93798118 -27459412 - MTC LTR MaLR -61 360 1 4 1300 39 22 0 0 chr12 93798905 93798951 -27458579 + AT_rich Low_complexity Low_complexity 1 46 0 4 1300 295 293 36 48 chr12 93799311 93799562 -27457968 + L1M2 LINE L1 5151 5398 -745 4 1300 7656 63 7 6 chr12 93799671 93800826 -27456704 - L1Md_F2 LINE L1 -5 6577 5423 4 1300 403 39 0 0 chr12 93800824 93800875 -27456655 - L1Md_F2 LINE L1 -1146 4737 4687 4 1300 21 36 0 0 chr12 93800988 93801016 -27456514 + AT_rich Low_complexity Low_complexity 1 28 0 4 1300 382 344 38 30 chr12 93801142 93801180 -27456350 + B1F2 SINE Alu 17 55 -94 4 1300 495 121 0 0 chr12 93801180 93801263 -27456267 + L1Md_F2 LINE L1 6488 6570 -12 4 1300 382 344 38 30 chr12 93801263 93801356 -27456174 + B1F2 SINE Alu 56 149 0 4 1300 712 115 8 8 chr12 93801485 93801608 -27455922 + (TC)n Simple_repeat Simple_repeat 1 123 0 4 1300 333 0 0 0 chr12 93801608 93801645 -27455885 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1300 223 336 35 96 chr12 93801649 93801764 -27455766 - B3A SINE B2 -27 171 64 4 1300 1119 306 41 18 chr12 93801747 93802139 -27455391 - MTD LTR MaLR -14 405 5 4 1300 1089 288 49 99 chr12 93802228 93803001 -27454529 - L1_Mur3 LINE L1 -661 5495 4733 4 1300 218 32 0 31 chr12 93803001 93803033 -27454497 + (TTA)n Simple_repeat Simple_repeat 1 31 0 4 1300 600 246 209 0 chr12 93803041 93803228 -27454302 - URR1A DNA MER1_type 0 226 1 4 1300 1089 288 52 98 chr12 93803228 93803284 -27454246 - L1_Mur3 LINE L1 -1396 4744 4666 4 1300 4180 140 19 6 chr12 93803284 93803954 -27453576 + Lx2 LINE L1 6319 6997 0 4 1300 536 292 98 16 chr12 93803954 93804018 -27453512 - L1_Mur3 LINE L1 -1451 4689 4615 4 1300 505 301 55 0 chr12 93804044 93804300 -27453230 - L1_Mur3 LINE L1 -1595 4285 4016 4 1300 23 68 0 0 chr12 93804715 93804759 -27452771 + AT_rich Low_complexity Low_complexity 1 44 0 4 1300 21 0 0 0 chr12 93805504 93805525 -27452005 + AT_rich Low_complexity Low_complexity 1 21 0 4 1300 1649 66 5 0 chr12 93805597 93805810 -27451720 - L1Md_T LINE L1 0 6582 6369 4 1300 343 248 45 45 chr12 93807167 93807277 -27450253 - LTR33 LTR ERVL -5 510 401 4 1300 385 240 131 27 chr12 93807441 93807589 -27449941 - MTE2b LTR MaLR -2 377 190 4 1300 4500 140 21 5 chr12 93807860 93808606 -27448924 - L1_Mur2 LINE L1 -1303 4574 3817 4 1300 3809 93 2 24 chr12 93808605 93809147 -27448383 + Lx LINE L1 5918 6447 -207 4 1300 269 304 21 145 chr12 93809147 93809271 -27448259 - RMER12 LTR ERVK -396 1008 955 4 1300 1120 76 0 0 chr12 93809271 93809415 -27448115 + B1_Mm SINE Alu 2 145 -2 4 1300 269 299 24 148 chr12 93809415 93809531 -27447999 - RMER12 LTR ERVK -450 954 861 4 1300 1601 230 31 74 chr12 93809548 93810123 -27447407 - RMER12 LTR ERVK -1265 583 1 4 1300 700 215 35 24 chr12 93810384 93810565 -27446965 - B3 SINE B2 -9 186 2 4 1300 4833 212 52 31 chr12 93811465 93812579 -27444951 + Lx6 LINE L1 4602 5762 -118 4 1300 2189 171 7 5 chr12 93812579 93812989 -27444541 + Lx LINE L1 6243 6653 -1 4 1300 4833 245 42 53 chr12 93812989 93813407 -27444123 + Lx6 LINE L1 5763 6168 -1292 4 1300 2592 201 145 15 chr12 93813431 93813745 -27443785 + RMER6D LTR ERVK 1 366 -354 4 1300 436 68 27 0 chr12 93813745 93813818 -27443712 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 4 1300 2592 201 145 15 chr12 93813818 93814110 -27443420 + RMER6D LTR ERVK 367 685 -35 4 1300 4733 90 8 6 chr12 93814113 93814775 -27442755 + L1Md_F2 LINE L1 5916 6578 -4 4 1300 5139 236 44 29 chr12 93814790 93815306 -27442224 + Lx6 LINE L1 6209 6740 -720 4 1300 423 0 0 0 chr12 93815306 93815353 -27442177 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 1300 5139 236 44 29 chr12 93815353 93815924 -27441606 + Lx6 LINE L1 6741 7344 -116 4 1300 1920 213 16 27 chr12 93815924 93816368 -27441162 - BGLII_B LTR ERVK 0 441 3 4 1300 5139 236 44 29 chr12 93816368 93816509 -27441021 + Lx6 LINE L1 7345 7455 -5 4 1300 1158 56 7 0 chr12 93816730 93816874 -27440656 + B1_Mus2 SINE Alu 2 146 -1 4 1300 212 0 0 35 chr12 93817452 93817481 -27440049 + (CAA)n Simple_repeat Simple_repeat 2 29 0 4 1300 212 188 16 0 chr12 93817845 93817909 -27439621 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 4 1300 294 227 121 0 chr12 93817997 93818063 -27439467 - ID4_ SINE ID -2 81 8 4 1300 608 373 67 39 chr12 93818175 93818565 -27438965 - LTR40a LTR ERVL 0 519 119 4 1300 181 213 43 0 chr12 93819589 93819636 -27437894 - MIR SINE MIR -110 152 104 4 1300 1030 258 4 0 chr12 93819699 93819951 -27437579 + L1_Mur2 LINE L1 152 404 -6308 4 1300 4940 192 38 20 chr12 93819956 93821021 -27436509 + Lx4A LINE L1 5973 7056 -2 4 1300 305 320 86 47 chr12 93821152 93821385 -27436145 + MIR SINE MIR 11 252 -10 4 1300 284 367 132 11 chr12 93821973 93822045 -27435485 - B4A SINE B4 -3 289 209 4 1300 625 24 24 0 chr12 93822045 93822128 -27435402 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 4 1300 284 367 132 11 chr12 93822128 93822237 -27435293 - B4A SINE B4 -84 208 88 4 1300 1390 315 25 53 chr12 93822512 93822985 -27434545 + MT2A LTR ERVL 3 462 -71 4 1300 231 36 0 0 chr12 93823034 93823062 -27434468 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1300 17205 44 9 7 chr12 93823271 93826370 -27431160 - L1Md_T LINE L1 0 6997 3880 4 1300 920 316 19 35 chr12 93826370 93826685 -27430845 + MTE2b LTR MaLR 29 338 -41 4 1300 21 57 0 0 chr12 93827080 93827115 -27430415 + AT_rich Low_complexity Low_complexity 1 35 0 4 1300 270 116 0 0 chr12 93828709 93828752 -27428778 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1300 951 352 47 15 chr12 93829050 93829711 -27427819 + L1_Mur3 LINE L1 4996 5677 -203 4 1300 29387 14 3 4 chr12 93829731 93834936 -27422594 + L1Md_A LINE L1 397 5586 -297 4 1300 8682 19 0 2 chr12 93834936 93835934 -27421596 + L1Md_A LINE L1 5587 6582 0 4 1300 274 243 0 14 chr12 93835954 93836025 -27421505 + L1P5 LINE L1 5724 5793 -363 4 1300 666 68 0 0 chr12 93836050 93836138 -27421392 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 1300 35 0 0 0 chr12 93836569 93836604 -27420926 + AT_rich Low_complexity Low_complexity 1 35 0 4 1300 200 342 83 51 chr12 93836725 93836882 -27420648 - MIRc SINE MIR -65 203 42 4 1300 286 189 19 0 chr12 93838004 93838057 -27419473 + MTE2a LTR MaLR 15 68 -311 4 1300 1204 175 9 9 chr12 93838057 93838276 -27419254 - URR1B DNA MER1_type -1 224 6 4 1300 884 261 111 34 chr12 93838284 93838581 -27418949 + MTE2a LTR MaLR 60 379 0 4 1300 1392 267 127 67 chr12 93840169 93840767 -27416763 + MTC-int LTR MaLR 623 1256 -2 4 1300 768 303 159 6 chr12 93840774 93841119 -27416411 + MTC LTR MaLR 10 407 -14 4 1300 1967 249 2 11 chr12 93841304 93841739 -27415791 - Lx6 LINE L1 -5 7455 7025 4 1300 1282 216 225 11 chr12 93842355 93842702 -27414828 + MTC LTR MaLR 1 421 0 4 1300 1203 62 0 0 chr12 93842770 93842916 -27414614 + B1_Mm SINE Alu 2 147 0 4 1300 260 307 72 14 chr12 93843136 93843357 -27414173 - L1MEc LINE L1 -3998 2417 2184 4 1300 308 329 11 58 chr12 93843496 93843670 -27413860 + MER20 DNA MER1_type 39 204 -15 4 1300 251 297 39 10 chr12 93843985 93844087 -27413443 + Lx9 LINE L1 6305 6409 -1235 4 1300 2748 176 13 23 chr12 93844087 93844611 -27412919 + RLTR11A LTR ERVK 1 519 -9 4 1300 1502 259 81 52 chr12 93844616 93845039 -27412491 + Lx9 LINE L1 7017 7472 -172 4 1300 567 94 31 16 chr12 93845039 93845168 -27412362 + (TA)n Simple_repeat Simple_repeat 1 131 0 4 1300 1502 259 81 52 chr12 93845168 93845202 -27412328 + Lx9 LINE L1 7473 7502 -142 4 1300 225 0 0 0 chr12 93845202 93845227 -27412303 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1300 1502 259 81 52 chr12 93845227 93845346 -27412184 + Lx9 LINE L1 7503 7611 -33 4 1300 548 307 133 15 chr12 93845542 93845939 -27411591 - L1MEc LINE L1 -4537 1863 1420 4 1300 339 315 57 42 chr12 93846028 93846293 -27411237 - L1MA4A LINE L1 -390 5913 5645 4 1300 2116 232 57 9 chr12 93846488 93847035 -27410495 + RMER15 LTR ERVL 1 573 -2 4 1300 246 156 0 0 chr12 93847035 93847080 -27410450 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 4 1300 210 71 0 0 chr12 93847078 93847106 -27410424 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 4 1301 303 339 87 71 chr12 93847719 93847903 -27409627 + MLT1G LTR MaLR 91 277 -314 4 1301 25 0 0 0 chr12 93848214 93848239 -27409291 + AT_rich Low_complexity Low_complexity 1 25 0 4 1301 207 100 0 0 chr12 93848484 93848514 -27409016 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1301 455 279 223 51 chr12 93850126 93850556 -27406974 + MLT1D LTR MaLR 2 505 0 4 1301 184 306 32 16 chr12 93851506 93851569 -27405961 - L2c LINE L2 -74 3313 3250 4 1301 188 315 124 0 chr12 93852097 93852186 -27405344 - MER5A DNA MER1_type -8 181 82 4 1301 201 167 0 0 chr12 93853097 93853133 -27404397 + A-rich Low_complexity Low_complexity 1 36 0 4 1301 913 281 111 23 chr12 93854225 93854568 -27402962 - MTEb LTR MaLR -5 374 2 4 1301 2239 186 96 73 chr12 93855924 93856515 -27401015 - Lx2B LINE L1 -1 6999 6395 4 1301 695 298 111 69 chr12 93856608 93857141 -27400389 + LTR82B Low_complexity ERVL 1 555 -275 4 1301 299 389 112 15 chr12 93857481 93857687 -27399843 - MER77 LTR ERVL -16 591 366 4 1301 538 289 168 7 chr12 93857708 93857851 -27399679 + B3A SINE B2 2 167 -31 4 1301 361 341 101 120 chr12 93857903 93858229 -27399301 - MER77 LTR ERVL -266 341 22 4 1301 2679 204 42 46 chr12 93858967 93859657 -27397873 + RMER6C LTR ERVK 1 687 -3 4 1301 305 233 0 110 chr12 93859818 93859900 -27397630 + MTEa LTR MaLR 5 77 -302 4 1301 311 318 40 17 chr12 93860592 93860768 -27396762 + L1ME4a LINE L1 5940 6119 -5 4 1301 4902 180 36 16 chr12 93861312 93862283 -27395247 - Lx2 LINE L1 0 6997 6008 4 1301 609 312 26 10 chr12 93863333 93863527 -27394003 + RMER30 DNA MER1_type 5 201 -1 4 1301 484 265 131 43 chr12 93863608 93863944 -27393586 - MTD LTR MaLR -14 405 25 4 1301 324 284 186 36 chr12 93863966 93864218 -27393312 - Tigger7 DNA MER2_type -107 2384 2095 4 1301 431 323 71 0 chr12 93864210 93864365 -27393165 - Tigger7 DNA MER2_type -2212 279 114 4 1301 459 0 0 0 chr12 93865010 93865061 -27392469 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1301 26 30 0 0 chr12 93865074 93865107 -27392423 + AT_rich Low_complexity Low_complexity 1 33 0 4 1301 484 74 31 21 chr12 93865167 93865264 -27392266 + (TA)n Simple_repeat Simple_repeat 2 99 0 5 1301 26 82 0 0 chr12 93865314 93865375 -27392155 + AT_rich Low_complexity Low_complexity 1 61 0 5 1301 442 317 98 61 chr12 93866591 93867081 -27390449 + MER67D LTR ERV1 3 510 -4 5 1301 200 114 0 43 chr12 93867081 93867127 -27390403 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1301 225 211 135 0 chr12 93867576 93867628 -27389902 - ID SINE ID -159 65 7 5 1301 21 57 0 0 chr12 93867742 93867777 -27389753 + AT_rich Low_complexity Low_complexity 1 35 0 5 1301 645 56 0 0 chr12 93867841 93867931 -27389599 + (TC)n Simple_repeat Simple_repeat 1 90 0 5 1301 665 358 21 0 chr12 93867956 93868196 -27389334 - B4A SINE B4 -46 246 2 5 1301 254 182 0 0 chr12 93868827 93868882 -27388648 + T-rich Low_complexity Low_complexity 1 55 0 5 1301 609 72 0 0 chr12 93869038 93869121 -27388409 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 1301 2368 50 0 3 chr12 93869672 93869970 -27387560 + L1Md_F3 LINE L1 6288 6584 0 5 1301 815 216 92 166 chr12 93870103 93870398 -27387132 - RMER19B LTR ERVK -322 580 308 5 1301 227 250 50 0 chr12 93870550 93870670 -27386860 - L1MEf LINE L1 -4216 1984 1859 5 1301 22 35 0 0 chr12 93870731 93870760 -27386770 + AT_rich Low_complexity Low_complexity 1 29 0 5 1301 682 238 9 19 chr12 93870882 93871092 -27386438 + Lx9 LINE L1 7310 7517 -127 5 1301 663 144 0 0 chr12 93871103 93871214 -27386316 + (TA)n Simple_repeat Simple_repeat 2 112 0 5 1301 22 56 0 0 chr12 93871559 93871595 -27385935 + AT_rich Low_complexity Low_complexity 1 36 0 5 1301 544 131 0 0 chr12 93872623 93872707 -27384823 + Lx LINE L1 5886 5969 -685 5 1301 5295 152 2 9 chr12 93872703 93873560 -27383970 + Lx LINE L1 5703 6553 -101 5 1301 441 0 0 0 chr12 93873689 93873738 -27383792 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1301 459 0 0 0 chr12 93873738 93873788 -27383742 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1301 306 352 80 15 chr12 93874781 93874980 -27382550 - B4A SINE B4 0 292 81 5 1301 310 372 40 20 chr12 93877641 93877792 -27379738 + MLT2B1 LTR ERVL 336 489 -78 5 1301 182 299 0 29 chr12 93877821 93877890 -27379640 + L3 LINE CR1 2114 2180 -2309 5 1301 285 100 0 0 chr12 93879229 93879279 -27378251 + (TTAA)n Simple_repeat Simple_repeat 3 52 0 5 1301 5548 170 9 3 chr12 93879437 93880400 -27377130 + Lx4A LINE L1 6090 7058 0 5 1301 727 130 23 0 chr12 93880627 93880758 -27376772 - Lx LINE L1 -229 6425 6292 5 1301 1443 107 0 0 chr12 93880750 93880955 -27376575 - Lx3_Mus LINE L1 -477 6532 6328 5 1301 739 296 81 38 chr12 93881309 93881731 -27375799 - L1MC LINE L1 -1829 4317 3878 5 1301 224 239 16 74 chr12 93881830 93881952 -27375578 + T-rich Low_complexity Low_complexity 4 118 0 5 1301 2952 172 6 11 chr12 93881969 93882492 -27375038 - Lx4A LINE L1 -53 7005 6486 5 1301 402 57 0 0 chr12 93882567 93882620 -27374910 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1301 181 289 62 62 chr12 93883400 93883496 -27374034 - MIR SINE MIR -150 112 17 5 1301 288 0 0 0 chr12 93884048 93884080 -27373450 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 5 1301 266 273 39 0 chr12 93884492 93884569 -27372961 + ID4 SINE ID 2 81 -2 5 1301 255 269 54 36 chr12 93885018 93885130 -27372400 + MLT1B LTR MaLR 54 167 -223 5 1301 1079 272 108 12 chr12 93885123 93885447 -27372083 + ORR1D2 LTR MaLR 15 369 -1 5 1301 1437 274 7 14 chr12 93885782 93886201 -27371329 + MTD LTR MaLR 1 416 -3 5 1301 270 318 11 23 chr12 93887241 93887328 -27370202 + B4A SINE B4 1 86 -206 5 1301 366 23 0 0 chr12 93887337 93887380 -27370150 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1301 383 83 17 0 chr12 93888583 93888643 -27368887 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1301 392 357 58 32 chr12 93888648 93888836 -27368694 + MER58A DNA MER1_type 7 199 -25 5 1301 33288 77 2 16 chr12 93888936 93894289 -27363241 + L1Md_F2 LINE L1 307 5586 -297 5 1301 7980 56 2 0 chr12 93894289 93895283 -27362247 + L1Md_F2 LINE L1 5587 6582 0 5 1301 477 0 0 0 chr12 93895399 93895452 -27362078 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1301 1846 191 58 34 chr12 93895454 93895865 -27361665 + MTC LTR MaLR 1 421 0 5 1301 225 237 117 13 chr12 93896935 93897012 -27360518 - MIRc SINE MIR -94 182 95 5 1301 208 139 0 0 chr12 93897152 93897188 -27360342 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1301 459 0 0 0 chr12 93897452 93897503 -27360027 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1301 1640 212 33 6 chr12 93897996 93898055 -27359475 - ORR1C1 LTR MaLR -2 376 318 5 1301 261 0 0 0 chr12 93898055 93898084 -27359446 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1301 1640 212 33 6 chr12 93898084 93898390 -27359140 - ORR1C1 LTR MaLR -61 317 2 5 1301 5234 73 16 4 chr12 93898729 93899434 -27358096 - L1Md_F2 LINE L1 0 6582 5870 5 1301 5474 64 0 0 chr12 93899434 93900137 -27357393 + L1_Mm LINE L1 4261 4963 -920 5 1301 273 93 19 0 chr12 93900138 93900192 -27357338 - Lx2B LINE L1 -6 6994 6940 5 1301 303 333 60 51 chr12 93900530 93900745 -27356785 - L3 LINE CR1 -473 4016 3800 5 1301 25 31 0 0 chr12 93900831 93900863 -27356667 + AT_rich Low_complexity Low_complexity 1 32 0 5 1301 444 105 30 40 chr12 93901381 93901480 -27356050 + Lx2 LINE L1 6899 6996 -1 5 1301 488 127 54 23 chr12 93901528 93901657 -27355873 + Lx9 LINE L1 7511 7643 -1 5 1301 5409 75 3 15 chr12 93901731 93902474 -27355056 - L1Md_F2 LINE L1 -14 6568 5835 5 1301 907 139 36 0 chr12 93902646 93902811 -27354719 + L1_Mus3 LINE L1 6450 6620 -18 5 1301 522 0 0 0 chr12 93902962 93903020 -27354510 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1301 384 22 0 0 chr12 93903482 93903527 -27354003 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1301 32 43 0 0 chr12 93903534 93903580 -27353950 + AT_rich Low_complexity Low_complexity 1 46 0 5 1301 2477 66 0 57 chr12 93903587 93903941 -27353589 + L1_Mus1 LINE L1 6234 6567 0 5 1301 3034 258 65 7 chr12 93904498 93905313 -27352217 - Lx6 LINE L1 -23 7437 6576 5 1301 676 315 107 27 chr12 93905610 93905976 -27351554 - Lx8 LINE L1 -144 7329 6935 5 1301 279 0 0 0 chr12 93906011 93906042 -27351488 + (TAA)n Simple_repeat Simple_repeat 1 31 0 5 1301 363 323 16 0 chr12 93906043 93906170 -27351360 - Lx8 LINE L1 -631 6842 6714 5 1301 755 294 57 47 chr12 93906176 93906488 -27351042 - RMER15 LTR ERVL 0 575 147 5 1301 515 16 0 15 chr12 93906488 93906553 -27350977 + (CTG)n Simple_repeat Simple_repeat 2 65 0 5 1301 339 243 107 45 chr12 93906553 93906691 -27350839 - RMER15 LTR ERVL -429 146 2 5 1301 2268 310 94 16 chr12 93907838 93908770 -27348760 + Lx8 LINE L1 6277 7281 -192 5 1301 216 0 0 0 chr12 93909248 93909272 -27348258 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1301 712 231 55 76 chr12 93909272 93909401 -27348129 - Lx7 LINE L1 -12 7684 7562 5 1301 1129 75 0 0 chr12 93909401 93909540 -27347990 + B1_Mus2 SINE Alu 1 139 -8 5 1301 216 0 0 0 chr12 93909540 93909564 -27347966 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1301 180 0 0 0 chr12 93909575 93909595 -27347935 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1301 712 231 55 76 chr12 93909595 93909788 -27347742 - Lx7 LINE L1 -135 7561 7366 5 1301 250 176 87 11 chr12 93909794 93909886 -27347644 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 5 1301 224 213 0 16 chr12 93909914 93909976 -27347554 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1301 5106 239 73 31 chr12 93909977 93911405 -27346125 - Lx7 LINE L1 -342 7354 5868 5 1301 387 0 0 0 chr12 93911568 93911611 -27345919 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1301 1137 202 5 5 chr12 93912951 93913175 -27344355 - URR1B DNA MER1_type 0 225 2 5 1301 1079 102 0 0 chr12 93913371 93913518 -27344012 + B1_Mm SINE Alu 1 147 0 5 1301 228 212 0 0 chr12 93913542 93913608 -27343922 + A-rich Low_complexity Low_complexity 1 66 0 5 1301 21 0 0 0 chr12 93915542 93915563 -27341967 + AT_rich Low_complexity Low_complexity 1 21 0 5 1301 231 103 0 0 chr12 93916182 93916221 -27341309 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1301 258 32 0 0 chr12 93917010 93917041 -27340489 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1301 2041 268 29 10 chr12 93917810 93918330 -27339200 - Lx6 LINE L1 -1 7459 6930 5 1301 5378 198 42 8 chr12 93918400 93919590 -27337940 - Lx2B LINE L1 -8 6992 5763 5 1301 1150 232 38 48 chr12 93919592 93919972 -27337558 - RMER19C LTR ERVK -385 352 1 5 1301 1723 206 40 5 chr12 93919974 93920349 -27337181 - Lx6 LINE L1 -539 6921 6534 5 1301 188 405 62 9 chr12 93920503 93920615 -27336915 - MER5A DNA MER1_type -70 119 2 5 1301 1668 294 48 8 chr12 93921399 93921920 -27335610 - Lx9 LINE L1 -797 6847 6306 5 1301 28 29 0 0 chr12 93921923 93921958 -27335572 + AT_rich Low_complexity Low_complexity 1 35 0 5 1301 2203 263 30 34 chr12 93922071 93922713 -27334817 + Lx9 LINE L1 6845 7483 -161 5 1301 1637 215 134 5 chr12 93922898 93923300 -27334230 - Lx4B LINE L1 -1 7057 6604 5 1301 264 192 0 0 chr12 93923302 93923354 -27334176 + Lx2A1 LINE L1 6597 6648 -360 5 1301 240 111 0 0 chr12 93923350 93923386 -27334144 - Lx4B LINE L1 -1184 5874 5839 5 1301 478 316 75 12 chr12 93925423 93925596 -27331934 - B4A SINE B4 -1 291 108 5 1301 1270 184 5 5 chr12 93925628 93925852 -27331678 - Lx2B LINE L1 -24 6976 6753 5 1301 376 207 1 18 chr12 93925882 93925961 -27331569 - B4A SINE B4 -88 77 2 5 1301 1504 278 170 19 chr12 93926067 93926603 -27330927 - Lx6 LINE L1 -28 7432 6816 5 1301 289 355 42 14 chr12 93927226 93927369 -27330161 - L2c LINE L2 -9 3378 3232 5 1301 345 280 70 70 chr12 93928123 93928338 -27329192 + L1_Mur3 LINE L1 5305 5519 -361 5 1301 271 300 74 74 chr12 93928353 93928461 -27329069 - B1F SINE Alu -3 114 7 5 1301 558 0 0 0 chr12 93928482 93928544 -27328986 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1301 229 236 33 33 chr12 93928545 93928637 -27328893 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 6 1301 31 0 0 0 chr12 93928777 93928808 -27328722 + AT_rich Low_complexity Low_complexity 1 31 0 6 1301 272 308 64 18 chr12 93929120 93929229 -27328301 + PB1D9 SINE Alu 5 118 -2 6 1301 1419 152 102 4 chr12 93931566 93931831 -27325699 - ORR1A3-int LTR MaLR -727 1236 946 6 1301 2036 153 58 50 chr12 93931831 93932230 -27325300 + Lx2 LINE L1 6595 6996 -1 6 1301 639 277 8 13 chr12 93932253 93932487 -27325043 - ORR1A3-int LTR MaLR -1013 950 718 6 1301 1258 206 55 59 chr12 93932445 93932734 -27324796 - MT2B LTR ERVL -313 288 1 6 1301 334 228 68 75 chr12 93933972 93934105 -27323425 + LTR79 LTR ERVL 363 494 -33 6 1301 25 31 0 0 chr12 93934336 93934368 -27323162 + AT_rich Low_complexity Low_complexity 1 32 0 6 1301 228 35 0 0 chr12 93935287 93935316 -27322214 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1301 549 55 0 0 chr12 93935423 93935496 -27322034 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 1301 297 0 0 0 chr12 93935666 93935699 -27321831 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1301 271 313 51 40 chr12 93936246 93936522 -27321008 + L1M4b LINE L1 1460 1738 -5596 6 1301 523 310 176 24 chr12 93936523 93937029 -27320501 + L1M4b LINE L1 3537 4119 -2887 6 1301 242 91 0 0 chr12 93937272 93937316 -27320214 - Lx2 LINE L1 0 6997 6954 6 1301 231 327 45 63 chr12 93937396 93937618 -27319912 + L1M4b LINE L1 6361 6578 -460 6 1301 381 276 73 57 chr12 93937685 93937862 -27319668 + MLT2C1 LTR ERVL 13 192 -205 6 1301 303 98 0 47 chr12 93938480 93938544 -27318986 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 1301 1758 316 118 23 chr12 93938646 93939565 -27317965 + Lx9 LINE L1 6426 7431 -213 6 1301 652 22 11 42 chr12 93940429 93940524 -27317006 + (TC)n Simple_repeat Simple_repeat 1 92 0 6 1301 419 282 64 71 chr12 93940709 93940850 -27316680 - B1F1 SINE Alu -4 145 6 6 1301 833 304 55 11 chr12 93941307 93941580 -27315950 - B4 SINE B4 -6 286 2 6 1301 34 42 0 0 chr12 93942489 93942537 -27314993 + AT_rich Low_complexity Low_complexity 1 48 0 6 1301 279 171 63 31 chr12 93942588 93942715 -27314815 + (TA)n Simple_repeat Simple_repeat 2 132 0 6 1301 24 32 0 0 chr12 93943062 93943093 -27314437 + AT_rich Low_complexity Low_complexity 1 31 0 6 1301 636 111 0 0 chr12 93943094 93943193 -27314337 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 1301 477 316 148 42 chr12 93943891 93943914 -27313616 + Lx9 LINE L1 6976 6996 -648 6 1301 1280 89 22 0 chr12 93943914 93944094 -27313436 + B2_Mm2 SINE B2 3 186 -9 6 1301 477 316 148 42 chr12 93944094 93944354 -27313176 + Lx9 LINE L1 6997 7289 -355 6 1301 396 0 0 0 chr12 93944360 93944404 -27313126 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1301 3784 126 21 2 chr12 93944935 93945506 -27312024 + Lx LINE L1 6063 6644 -10 6 1301 627 228 36 42 chr12 93945877 93946042 -27311488 - B4 SINE B4 0 292 129 6 1301 2365 120 79 3 chr12 93946167 93946559 -27310971 - BGLII_Mus LTR ERVK 0 422 1 6 1301 969 76 0 0 chr12 93948369 93948500 -27309030 + (GAA)n Simple_repeat Simple_repeat 2 132 0 6 1301 449 106 12 0 chr12 93948574 93948659 -27308871 - L1Md_F2 LINE L1 0 6582 6497 6 1301 525 105 0 0 chr12 93949035 93949121 -27308409 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 6 1301 4076 286 36 28 chr12 93949159 93950483 -27307047 - Lx7 LINE L1 -393 7303 5969 6 1301 402 304 8 60 chr12 93951851 93951910 -27305620 - RSINE1 SINE B4 -32 133 79 6 1301 2162 98 13 7 chr12 93951910 93952217 -27305313 - RLTR27 LTR ERVK 0 309 1 6 1301 402 304 8 60 chr12 93952217 93952290 -27305240 - RSINE1 SINE B4 -87 78 8 6 1301 229 347 159 25 chr12 93952697 93952942 -27304588 - B4A SINE B4 -10 282 5 6 1301 252 122 0 0 chr12 93953783 93953824 -27303706 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 6 1301 317 297 21 21 chr12 93953824 93953917 -27303613 + B4A SINE B4 3 95 -197 6 1301 1016 278 72 21 chr12 93953942 93954276 -27303254 + RMER4B LTR ERVK 60 410 -175 6 1301 306 0 0 0 chr12 93954562 93954596 -27302934 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1301 232 267 147 0 chr12 93954763 93954838 -27302692 + MTEa LTR MaLR 9 94 -265 6 1301 406 185 21 21 chr12 93954962 93955056 -27302474 + MTEa LTR MaLR 286 379 0 6 1301 4909 68 14 5 chr12 93955199 93955854 -27301676 + L1_Mm LINE L1 4506 5166 -717 6 1301 189 0 0 0 chr12 93955967 93955988 -27301542 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 6 1301 328 261 179 30 chr12 93957565 93957766 -27299764 - L2c LINE L2 -41 3346 3116 6 1301 23 0 0 0 chr12 93958675 93958698 -27298832 + AT_rich Low_complexity Low_complexity 1 23 0 6 1301 297 355 0 7 chr12 93958724 93958860 -27298670 - RSINE1 SINE B4 -29 136 2 6 1301 362 203 40 87 chr12 93958888 93959018 -27298512 - Lx9 LINE L1 -2 7642 7517 6 1301 1038 67 0 62 chr12 93959018 93959210 -27298320 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1301 362 203 40 87 chr12 93959210 93959252 -27298278 - Lx9 LINE L1 -128 7516 7478 6 1301 426 161 0 0 chr12 93959261 93959354 -27298176 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 1301 656 199 55 24 chr12 93959354 93959519 -27298011 - Lx9 LINE L1 -125 7519 7350 6 1301 250 232 0 0 chr12 93959520 93959576 -27297954 + Lx9 LINE L1 6726 6781 -863 6 1301 1879 289 33 35 chr12 93959819 93960539 -27296991 - Lx9 LINE L1 -205 7439 6721 6 1301 611 316 152 0 chr12 93960542 93960779 -27296751 + MTEa LTR MaLR 107 379 0 6 1301 214 348 42 49 chr12 93960974 93961116 -27296414 + MIR SINE MIR 71 211 -51 6 1301 226 309 112 28 chr12 93962468 93962611 -27294919 + MER58A DNA MER1_type 49 203 -21 6 1301 4793 74 1 11 chr12 93963025 93963677 -27293853 + L1Md_F2 LINE L1 5937 6582 0 6 1301 1141 128 15 0 chr12 93963677 93963880 -27293650 + Lx LINE L1 6447 6652 -2 6 1301 498 216 101 7 chr12 93963919 93964068 -27293462 + Lx5 LINE L1 6888 7050 0 6 1301 7345 50 1 7 chr12 93964418 93965522 -27292008 - L1Md_F2 LINE L1 -82 6500 5408 6 1301 1069 62 62 0 chr12 93965522 93965666 -27291864 - Lx2 LINE L1 -201 6796 6644 6 1301 996 74 0 26 chr12 93965683 93965836 -27291694 + L1Md_F2 LINE L1 6422 6570 -12 6 1301 1018 228 115 15 chr12 93966163 93966502 -27291028 + Lx9 LINE L1 7271 7643 -1 6 1301 422 328 21 21 chr12 93966960 93967100 -27290430 - B1F SINE Alu 0 149 10 6 1301 345 324 0 9 chr12 93967866 93967972 -27289558 + Lx7 LINE L1 6661 6765 -931 6 1301 666 270 49 0 chr12 93968199 93968384 -27289146 - B3A SINE B2 0 198 5 6 1301 242 302 40 85 chr12 93968689 93968769 -27288761 - L1M5 LINE L1 -3439 2707 2639 6 1301 757 277 43 10 chr12 93968769 93968977 -27288553 + B3 SINE B2 1 215 -1 6 1301 242 302 40 85 chr12 93968977 93969120 -27288410 - L1M5 LINE L1 -3508 2638 2494 6 1301 22 56 0 0 chr12 93969507 93969543 -27287987 + AT_rich Low_complexity Low_complexity 1 36 0 6 1301 622 204 9 13 chr12 93969710 93969951 -27287579 + (TG)n Simple_repeat Simple_repeat 1 239 0 6 1301 297 312 0 61 chr12 93969967 93970031 -27287499 - B4 SINE B4 -4 288 228 6 1301 195 42 0 0 chr12 93970031 93970055 -27287475 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 6 1301 297 278 452 96 chr12 93970055 93970170 -27287360 - B4 SINE B4 -65 227 72 6 1301 22 70 0 0 chr12 93970350 93970393 -27287137 + AT_rich Low_complexity Low_complexity 1 43 0 6 1301 389 369 28 11 chr12 93970491 93970669 -27286861 + MER44D DNA MER2_type 8 188 -517 6 1301 445 294 88 11 chr12 93970677 93970859 -27286671 + MER44D DNA MER2_type 487 682 -23 6 1301 1491 180 75 87 chr12 93971147 93971505 -27286025 - ORR1B1 LTR MaLR 0 394 41 6 1301 567 71 0 0 chr12 93971611 93971696 -27285834 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 1301 432 0 0 0 chr12 93972029 93972077 -27285453 + (TTA)n Simple_repeat Simple_repeat 2 49 0 6 1301 278 185 0 12 chr12 93972079 93972161 -27285369 + (CTA)n Simple_repeat Simple_repeat 1 81 0 6 1301 794 183 6 0 chr12 93972977 93973146 -27284384 + GA-rich Low_complexity Low_complexity 2 171 0 6 1301 208 0 0 36 chr12 93973146 93973174 -27284356 + (GGA)n Simple_repeat Simple_repeat 2 28 0 6 1301 191 204 0 20 chr12 93973174 93973224 -27284306 + GA-rich Low_complexity Low_complexity 5 53 0 6 1301 270 0 0 0 chr12 93974450 93974480 -27283050 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1301 477 0 0 0 chr12 93975102 93975155 -27282375 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1301 470 84 52 21 chr12 93975206 93975303 -27282227 + GA-rich Low_complexity Low_complexity 4 103 0 6 1301 234 62 0 0 chr12 93975940 93975972 -27281558 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1301 435 112 0 0 chr12 93975972 93976052 -27281478 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1301 215 194 32 0 chr12 93977576 93977638 -27279892 + A-rich Low_complexity Low_complexity 2 65 0 6 1301 25 0 0 0 chr12 93978300 93978325 -27279205 + AT_rich Low_complexity Low_complexity 1 25 0 6 1302 718 218 0 0 chr12 93978627 93978760 -27278770 + B1_Mus2 SINE Alu 1 133 -14 6 1302 315 0 0 0 chr12 93979093 93979128 -27278402 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1302 207 0 0 0 chr12 93979185 93979208 -27278322 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1302 1518 168 93 64 chr12 93979366 93979678 -27277852 + ORR1A3 LTR MaLR 6 326 0 6 1302 2000 175 3 6 chr12 93979777 93980128 -27277402 - ORR1B1 LTR MaLR -8 386 37 6 1302 38871 17 12 17 chr12 93980257 93981907 -27275623 - L1Md_A LINE L1 -1 6581 4926 6 1302 225 183 46 77 chr12 93981907 93981972 -27275558 + RMER20A LTR ERVK 186 248 -268 6 1302 38871 17 12 17 chr12 93981972 93986463 -27271067 - L1Md_A LINE L1 -1 4925 414 6 1302 22 35 0 0 chr12 93987218 93987247 -27270283 + AT_rich Low_complexity Low_complexity 1 29 0 6 1302 228 100 0 0 chr12 93987477 93987517 -27270013 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1302 207 0 0 0 chr12 93987517 93987540 -27269990 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1302 718 305 83 16 chr12 93987865 93988217 -27269313 - MTD LTR MaLR -14 405 23 6 1302 243 88 0 0 chr12 93988217 93988251 -27269279 + (CAA)n Simple_repeat Simple_repeat 3 36 0 6 1302 1153 41 29 0 chr12 93988306 93988478 -27269052 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 6 1302 643 296 73 49 chr12 93989774 93990062 -27267468 + MER34A LTR ERV1 3 297 -274 6 1302 903 316 87 16 chr12 93990062 93990384 -27267146 + ORR1D2 LTR MaLR 1 345 -25 6 1302 1547 242 25 123 chr12 93990432 93990618 -27266912 + RMER19C LTR ERVK 1 160 -451 7 1302 2415 116 79 15 chr12 93990618 93990838 -27266692 - BGLII LTR ERVK -2 419 175 7 1302 1200 57 0 0 chr12 93990838 93990995 -27266535 + (TTTC)n Simple_repeat Simple_repeat 4 160 0 7 1302 2415 116 79 15 chr12 93990995 93991168 -27266362 - BGLII LTR ERVK -247 174 1 7 1302 1547 242 25 123 chr12 93991168 93991508 -27266022 + RMER19C LTR ERVK 161 475 -136 7 1302 1755 32 0 9 chr12 93991508 93991747 -27265783 - L1Md_F3 LINE L1 0 6584 6344 7 1302 419 99 42 0 chr12 93991747 93991818 -27265712 + RMER19B LTR ERVK 829 902 0 7 1302 285 29 0 0 chr12 93992210 93992244 -27265286 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1302 494 287 128 87 chr12 93992255 93992404 -27265126 - B3A SINE B2 -39 156 2 7 1302 381 344 36 52 chr12 93992707 93992900 -27264630 - MER31A LTR ERV1 -33 452 263 7 1302 275 194 86 0 chr12 93993000 93993093 -27264437 - Lx9 LINE L1 -6 7638 7538 7 1302 487 279 41 0 chr12 93993115 93993287 -27264243 - Lx9 LINE L1 -157 7487 7309 7 1302 245 281 12 24 chr12 93993277 93993361 -27264169 + Lx9 LINE L1 6853 6935 -709 7 1302 4696 124 0 6 chr12 93993659 93994381 -27263149 + Lx2 LINE L1 6280 6997 0 7 1302 3112 149 54 11 chr12 93994794 93995349 -27262181 + Lx4B LINE L1 6470 7048 -10 7 1302 15148 21 34 34 chr12 93996596 93997804 -27259726 + L1_Mm LINE L1 3660 4908 -975 7 1302 225 183 46 77 chr12 93997804 93997869 -27259661 - RMER20A LTR ERVK -268 248 186 7 1302 15148 21 34 34 chr12 93997869 93998523 -27259007 + L1_Mm LINE L1 4909 5586 -297 7 1302 8961 6 0 0 chr12 93998523 93999567 -27257963 + L1Md_T LINE L1 5587 6582 0 7 1302 1153 180 16 12 chr12 93999659 93999907 -27257623 - RMER3D-int LTR ERVK -1551 1291 1043 7 1302 303 244 0 44 chr12 93999910 94000000 -27257530 - RMER13B LTR ERVK -4 904 819 7 1302 2850 196 30 23 chr12 94000000 94000610 -27256920 - RMER13B LTR ERVK -90 818 205 1 1302 305 311 55 11 chr12 94000960 94001051 -27256479 - PB1D7 SINE Alu -5 115 21 2 1302 250 356 26 9 chr12 94002759 94002875 -27254655 - Lx9 LINE L1 -412 7232 7115 3 1302 242 254 81 8 chr12 94002919 94003042 -27254488 + Lx9 LINE L1 7482 7613 -31 4 1302 277 271 148 44 chr12 94003108 94003243 -27254287 + MLT1E3 LTR MaLR 474 622 -2 5 1302 22 0 0 0 chr12 94003402 94003424 -27254106 + AT_rich Low_complexity Low_complexity 1 22 0 6 1302 295 321 28 0 chr12 94004310 94004419 -27253111 - MER5A DNA MER1_type -60 129 18 7 1302 324 0 0 0 chr12 94004859 94004895 -27252635 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1302 261 0 0 0 chr12 94004897 94004926 -27252604 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1302 221 281 289 11 chr12 94005006 94005279 -27252251 + L2 LINE L2 1694 2042 -1377 1 1302 251 311 66 15 chr12 94005731 94005868 -27251662 + MER2 DNA MER2_type 83 226 -119 1 1302 1034 293 124 19 chr12 94006902 94007482 -27250048 + Lx8 LINE L1 6805 7445 -28 1 1302 189 371 14 43 chr12 94007649 94007787 -27249743 - MIRb SINE MIR -112 156 23 1 1302 236 352 0 62 chr12 94008614 94008711 -27248819 + ID_B1 SINE B4 93 183 -41 1 1302 3930 61 0 2 chr12 94008740 94009292 -27248238 + L1Md_F2 LINE L1 6090 6582 0 1 1302 536 309 18 29 chr12 94009307 94009477 -27248053 + B4A SINE B4 5 172 -120 1 1302 288 0 0 0 chr12 94009513 94009545 -27247985 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1302 665 126 22 22 chr12 94009685 94009864 -27247666 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1 1302 403 329 104 36 chr12 94009959 94010180 -27247350 + MT2A LTR ERVL 3 238 -295 1 1302 262 294 90 36 chr12 94010276 94010442 -27247088 + MT2A LTR ERVL 410 584 0 1 1302 188 333 119 20 chr12 94010732 94010833 -27246697 - MIR3 SINE MIR -44 164 54 2 1302 237 108 0 0 chr12 94010976 94011013 -27246517 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 2 1302 1617 209 125 3 chr12 94011076 94011451 -27246079 - MTC LTR MaLR 0 421 1 2 1302 278 364 57 50 chr12 94011567 94011726 -27245804 + RSINE1 SINE B4 2 161 -4 2 1302 1622 31 5 0 chr12 94012085 94012276 -27245254 - B2_Mm1t SINE B2 0 193 2 2 1302 4619 45 0 0 chr12 94014783 94015340 -27242190 - L1Md_F2 LINE L1 -233 6349 5793 2 1302 1028 94 0 18 chr12 94015340 94015503 -27242027 + L1Md_F2 LINE L1 6421 6580 -2 2 1302 719 280 44 0 chr12 94016115 94016297 -27241233 + B3 SINE B2 9 198 -18 2 1302 756 22 0 0 chr12 94016299 94016389 -27241141 + (GA)n Simple_repeat Simple_repeat 1 90 0 2 1302 1124 69 29 0 chr12 94016419 94016594 -27240936 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1302 390 322 88 75 chr12 94017269 94017564 -27239966 + MTEb LTR MaLR 81 379 0 2 1302 234 0 0 0 chr12 94018891 94018917 -27238613 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1302 290 250 56 40 chr12 94018917 94019042 -27238488 + Lx7 LINE L1 7570 7696 0 3 1302 394 286 58 81 chr12 94019289 94019548 -27237982 - MER57D LTR ERV1 0 411 159 3 1302 464 105 13 0 chr12 94020176 94020252 -27237278 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1302 1050 132 17 0 chr12 94020259 94020433 -27237097 - L1_Mus3 LINE L1 -5 6633 6457 3 1302 419 260 144 22 chr12 94020755 94020936 -27236594 - MER3 DNA MER1_type -5 204 2 3 1302 299 340 94 16 chr12 94021123 94021377 -27236153 + B4A SINE B4 1 274 -18 3 1302 196 213 75 90 chr12 94021515 94021582 -27235948 - MER5A DNA MER1_type -113 76 11 3 1302 511 322 64 23 chr12 94022094 94022313 -27235217 - B4A SINE B4 -60 232 5 3 1302 228 35 0 0 chr12 94023067 94023096 -27234434 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1302 1012 99 0 47 chr12 94024391 94024539 -27232991 + B1_Mus1 SINE Alu 2 142 -6 4 1302 379 0 0 38 chr12 94024545 94024598 -27232932 + (TAA)n Simple_repeat Simple_repeat 1 51 0 4 1302 794 314 65 51 chr12 94024874 94024896 -27232634 + MTE2a LTR MaLR 2 23 -356 4 1302 1369 44 44 0 chr12 94024896 94025079 -27232451 - L1Md_A LINE L1 -1 6581 6391 4 1302 794 314 65 51 chr12 94025079 94025260 -27232270 + MTE2a LTR MaLR 24 212 -167 4 1302 813 110 0 0 chr12 94025260 94025405 -27232125 + (TC)n Simple_repeat Simple_repeat 2 146 0 4 1302 794 314 65 51 chr12 94025405 94025559 -27231971 + MTE2a LTR MaLR 213 367 -12 4 1302 5260 46 3 6 chr12 94025559 94026217 -27231313 + L1Md_F2 LINE L1 5927 6582 0 4 1302 794 314 65 51 chr12 94026217 94026229 -27231301 + MTE2a LTR MaLR 368 378 -1 4 1302 198 0 0 0 chr12 94026242 94026264 -27231266 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1302 21 0 0 0 chr12 94026570 94026591 -27230939 + AT_rich Low_complexity Low_complexity 1 21 0 4 1302 3433 151 18 5 chr12 94026721 94027334 -27230196 - Lx3C LINE L1 -860 5026 4406 4 1302 7255 160 42 18 chr12 94027334 94029225 -27228305 + Lx3C LINE L1 5025 6963 -13 4 1302 491 0 0 17 chr12 94029225 94029285 -27228245 + (TAA)n Simple_repeat Simple_repeat 2 60 0 4 1302 512 234 136 25 chr12 94030067 94030229 -27227301 + B3A SINE B2 3 182 -16 5 1302 180 0 0 0 chr12 94031015 94031035 -27226495 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 1302 765 127 25 0 chr12 94031594 94031712 -27225818 + B1_Mus1 SINE Alu 22 142 -6 5 1302 189 0 0 0 chr12 94031713 94031734 -27225796 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1302 1214 25 162 0 chr12 94031747 94031907 -27225623 + B2_Mm1a SINE B2 2 187 -6 5 1302 21 0 0 0 chr12 94031972 94031993 -27225537 + AT_rich Low_complexity Low_complexity 1 21 0 5 1302 210 233 0 0 chr12 94032042 94032102 -27225428 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1302 426 20 0 0 chr12 94032642 94032693 -27224837 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1302 197 83 0 27 chr12 94032899 94032936 -27224594 + (TATTG)n Simple_repeat Simple_repeat 4 39 0 5 1302 2279 214 21 10 chr12 94033012 94033494 -27224036 - Lx2B LINE L1 -6 6994 6508 5 1302 660 324 65 52 chr12 94033494 94033862 -27223668 - Lx8 LINE L1 -168 7305 6933 6 1302 3125 222 35 81 chr12 94034074 94034296 -27223234 + L1_Mur3 LINE L1 3672 3870 -2010 6 1302 4698 63 0 10 chr12 94034296 94034917 -27222613 - L1Md_F2 LINE L1 -12 6570 5956 6 1302 3125 222 35 81 chr12 94034917 94034963 -27222567 + L1_Mur3 LINE L1 3871 3882 -1998 6 1302 1523 76 0 9 chr12 94034963 94035176 -27222354 + L1_Mus2 LINE L1 6356 6566 0 6 1302 3125 222 35 81 chr12 94035176 94035915 -27221615 + L1_Mur3 LINE L1 3883 4633 -1247 6 1302 31 68 0 0 chr12 94038148 94038207 -27219323 + AT_rich Low_complexity Low_complexity 1 59 0 6 1302 368 362 70 5 chr12 94038577 94038763 -27218767 + MTD LTR MaLR 19 216 -203 6 1302 263 251 128 52 chr12 94038777 94038916 -27218614 + MTD LTR MaLR 240 384 -16 6 1302 593 314 6 12 chr12 94038915 94039086 -27218444 - ID_B1 SINE B4 -54 170 1 6 1302 21 36 0 0 chr12 94039109 94039137 -27218393 + AT_rich Low_complexity Low_complexity 1 28 0 6 1302 728 237 42 29 chr12 94039617 94039821 -27217709 - ORR1D1 LTR MaLR -15 379 172 6 1302 835 241 6 0 chr12 94040073 94040247 -27217283 + MTE2b LTR MaLR 11 185 -194 6 1302 22 35 0 0 chr12 94040300 94040329 -27217201 + AT_rich Low_complexity Low_complexity 1 29 0 7 1302 332 58 54 71 chr12 94040406 94040462 -27217068 - HAL1-3A_ME LINE L1 -828 2030 1976 7 1302 217 208 0 27 chr12 94040482 94040556 -27216974 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1302 263 301 79 43 chr12 94040890 94041029 -27216501 + MLT1J LTR MaLR 75 218 -294 7 1302 3252 48 0 10 chr12 94041483 94041883 -27215647 - MTA_Mm LTR MaLR 0 396 1 7 1302 2866 232 69 6 chr12 94042000 94042815 -27214715 + Lx7 LINE L1 4947 5812 -68 7 1302 2041 92 3 3 chr12 94042812 94043119 -27214411 - L1_Mm LINE L1 -2604 3279 2973 7 1302 524 85 0 0 chr12 94043127 94043209 -27214321 + L1Md_F2 LINE L1 6498 6579 -3 7 1302 578 299 88 23 chr12 94043242 94043550 -27213980 + Lx7 LINE L1 5809 6136 -1560 7 1302 15279 90 15 14 chr12 94043562 94046638 -27210892 - L1Md_F2 LINE L1 0 6997 3856 7 1302 3784 90 0 27 chr12 94046635 94047192 -27210338 + L1Md_F2 LINE L1 3321 3862 -2021 7 1302 2158 76 24 0 chr12 94047189 94047479 -27210051 - L1_Mus2 LINE L1 -349 6217 5921 7 1302 2612 250 3 30 chr12 94047484 94048095 -27209435 + Lx6 LINE L1 6131 6725 -735 8 1302 795 206 19 0 chr12 94048093 94048253 -27209277 + Lx7 LINE L1 6808 6970 -726 8 1302 2717 111 20 7 chr12 94049560 94049968 -27207562 - Lx3B LINE L1 -3 6970 6558 8 1302 471 18 0 0 chr12 94050252 94050308 -27207222 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1302 240 224 43 43 chr12 94051103 94051173 -27206357 + MTD LTR MaLR 1 70 -351 8 1302 385 275 31 18 chr12 94051188 94051320 -27206210 + MTD LTR MaLR 235 397 -22 8 1302 613 173 6 11 chr12 94051477 94051658 -27205872 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 8 1302 459 168 0 0 chr12 94051629 94051748 -27205782 + (CAGAGA)n Simple_repeat Simple_repeat 2 120 0 8 1302 360 288 143 8 chr12 94051759 94051885 -27205645 - RSINE1 SINE B4 -20 145 3 8 1302 530 87 0 12 chr12 94051970 94052052 -27205478 + (CATA)n Simple_repeat Simple_repeat 4 84 0 8 1302 291 113 0 0 chr12 94052610 94052663 -27204867 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1302 206 209 0 0 chr12 94052682 94052725 -27204805 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1302 531 31 0 0 chr12 94052726 94052791 -27204739 + (TC)n Simple_repeat Simple_repeat 2 66 0 9 1302 351 44 0 0 chr12 94052791 94052835 -27204695 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1302 333 283 50 0 chr12 94053028 94053127 -27204403 + MTD LTR MaLR 1 104 -317 9 1302 345 190 215 0 chr12 94053088 94053167 -27204363 - B1F SINE Alu -13 136 41 9 1302 420 100 0 0 chr12 94053117 94053177 -27204353 - 4.5SRNA scRNA scRNA -6 88 29 9 1302 2791 53 31 0 chr12 94053177 94053537 -27203993 + L1_Mus1 LINE L1 6193 6563 -4 9 1302 870 271 106 26 chr12 94053549 94053822 -27203708 + MTD LTR MaLR 84 378 -41 9 1302 685 79 52 9 chr12 94055479 94055594 -27201936 + L1_Mus4 LINE L1 6515 6634 -2 9 1302 21 0 0 0 chr12 94055595 94055616 -27201914 + AT_rich Low_complexity Low_complexity 1 21 0 9 1302 195 0 0 79 chr12 94055641 94055679 -27201851 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1302 198 342 38 0 chr12 94055686 94055765 -27201765 - MER5A DNA MER1_type -54 135 54 9 1302 760 191 12 18 chr12 94056024 94056189 -27201341 - Lx9 LINE L1 -179 7465 7302 1 1302 2483 258 58 6 chr12 94056231 94056943 -27200587 + Lx2B LINE L1 6251 6999 -1 1 1302 441 198 0 0 chr12 94057815 94057906 -27199624 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1302 202 189 19 19 chr12 94057906 94057960 -27199570 + (TATAA)n Simple_repeat Simple_repeat 5 58 0 1 1302 28 48 0 0 chr12 94058714 94058756 -27198774 + AT_rich Low_complexity Low_complexity 1 42 0 1 1302 637 252 114 51 chr12 94059912 94060167 -27197363 + Lx7 LINE L1 5900 6170 -1526 1 1302 471 63 0 0 chr12 94060172 94060235 -27197295 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1302 1091 86 0 0 chr12 94060543 94060682 -27196848 + B1_Mus1 SINE Alu 1 139 -9 1 1302 414 0 0 0 chr12 94060760 94060806 -27196724 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1302 377 349 65 57 chr12 94060873 94061119 -27196411 + B4A SINE B4 1 248 -44 1 1302 323 370 36 0 chr12 94061333 94061471 -27196059 + B1_Mur2 SINE Alu 1 143 -6 1 1302 432 82 0 0 chr12 94061891 94061952 -27195578 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1302 207 69 0 0 chr12 94062784 94062813 -27194717 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1302 471 18 0 0 chr12 94064313 94064369 -27193161 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1302 495 33 0 0 chr12 94064371 94064432 -27193098 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1302 294 335 118 30 chr12 94065870 94066104 -27191426 + B4A SINE B4 3 260 -32 1 1302 471 63 0 0 chr12 94066104 94066167 -27191363 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1302 294 335 118 30 chr12 94066167 94066194 -27191336 + B4A SINE B4 261 287 -5 1 1302 1374 184 67 168 chr12 94066292 94066803 -27190727 + RMER6B LTR ERVK 3 461 0 1 1302 229 304 11 11 chr12 94067014 94067107 -27190423 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1302 250 371 47 12 chr12 94067565 94067737 -27189793 + MIRb SINE MIR 53 230 -38 1 1302 232 346 47 0 chr12 94068193 94068300 -27189230 + L1M5 LINE L1 5537 5648 -476 1 1302 1134 62 0 20 chr12 94068764 94068913 -27188617 + B1_Mus2 SINE Alu 1 146 -1 1 1302 231 333 82 20 chr12 94070351 94070449 -27187081 + MER58B DNA MER1_type 2 105 -236 1 1302 5274 41 3 0 chr12 94070477 94071114 -27186416 + L1Md_F2 LINE L1 5941 6579 -3 1 1302 25 31 0 0 chr12 94073727 94073759 -27183771 + AT_rich Low_complexity Low_complexity 1 32 0 1 1302 353 353 32 7 chr12 94073852 94074006 -27183524 - MER89 LTR ERV1 -24 535 378 1 1302 1681 168 73 18 chr12 94074475 94074815 -27182715 - ORR1B2 LTR MaLR -8 359 1 1 1302 369 0 0 0 chr12 94074845 94074886 -27182644 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 1 1302 1144 96 0 11 chr12 94074886 94075065 -27182465 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 1 1302 414 0 0 0 chr12 94075071 94075117 -27182413 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1 1302 307 319 92 23 chr12 94075286 94075459 -27182071 + MLT1A0 LTR MaLR 5 189 -176 1 1302 33549 73 1 17 chr12 94076886 94082050 -27175480 + L1Md_F2 LINE L1 511 5586 -297 1 1302 7927 55 2 0 chr12 94082050 94083042 -27174488 + L1Md_F2 LINE L1 5587 6580 -2 1 1302 2057 80 55 0 chr12 94083208 94083497 -27174033 - L1_Mus1 LINE L1 -118 6449 6145 1 1302 2858 238 118 11 chr12 94084242 94085908 -27171622 + L1_Mur3 LINE L1 115 1965 -3915 1 1302 890 251 87 33 chr12 94085954 94086089 -27171441 - ORR1B2 LTR MaLR -75 292 163 1 1302 1213 73 6 11 chr12 94086089 94086268 -27171262 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1302 890 251 87 33 chr12 94086268 94086408 -27171122 - ORR1B2 LTR MaLR -205 162 2 1 1302 2398 262 62 12 chr12 94086411 94087076 -27170454 + Lx6 LINE L1 5894 6591 -869 1 1302 2491 261 95 6 chr12 94087115 94087821 -27169709 + Lx6 LINE L1 6691 7459 -1 1 1302 22 35 0 0 chr12 94088761 94088790 -27168740 + AT_rich Low_complexity Low_complexity 1 29 0 1 1302 29 60 0 0 chr12 94088867 94088917 -27168613 + AT_rich Low_complexity Low_complexity 1 50 0 1 1302 1852 168 9 6 chr12 94088921 94089244 -27168286 - ORR1A3 LTR MaLR -2 324 1 1 1302 2262 88 33 15 chr12 94091070 94091405 -27166125 + L1Md_F2 LINE L1 6174 6514 -68 1 1302 441 0 0 0 chr12 94091936 94091985 -27165545 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1302 615 27 0 0 chr12 94092131 94092204 -27165326 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1302 3890 72 4 4 chr12 94093112 94093632 -27163898 - L1_Mus2 LINE L1 0 6566 6047 1 1302 243 0 0 0 chr12 94094875 94094902 -27162628 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1302 2151 143 24 3 chr12 94094902 94095274 -27162256 - Lx3B LINE L1 -7 6966 6587 1 1302 672 94 0 0 chr12 94095274 94095370 -27162160 + L1_Mur1 LINE L1 2218 2313 -3573 1 1302 436 364 94 28 chr12 94096308 94096596 -27160934 + MLT1E1A LTR MaLR 372 678 -2 1 1302 342 0 0 0 chr12 94096682 94096720 -27160810 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 1302 477 0 0 0 chr12 94097371 94097424 -27160106 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1302 595 200 147 6 chr12 94097426 94097582 -27159948 + URR1B DNA MER1_type 47 224 -1 1 1302 1544 254 81 10 chr12 94097758 94098197 -27159333 + Lx3C LINE L1 6474 7040 -18 1 1302 294 106 0 0 chr12 94098197 94098244 -27159286 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1302 544 236 162 12 chr12 94098244 94098257 -27159273 + Lx3C LINE L1 7041 7055 -3 1 1302 1361 207 47 0 chr12 94098564 94098863 -27158667 + Lx5 LINE L1 6738 7050 0 1 1302 470 275 29 7 chr12 94099536 94099675 -27157855 - MIR SINE MIR 0 262 121 1 1302 41218 5 0 0 chr12 94100413 94106780 -27150750 - L1Md_A LINE L1 0 6582 215 1 1302 324 0 0 0 chr12 94107007 94107043 -27150487 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1302 244 289 81 6 chr12 94107705 94107865 -27149665 - MER53 DNA hAT -1 192 21 1 1302 414 100 0 0 chr12 94108099 94108159 -27149371 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1302 415 330 0 0 chr12 94108175 94108290 -27149240 - B3A SINE B2 -83 115 1 1 1302 21 0 0 0 chr12 94109535 94109556 -27147974 + AT_rich Low_complexity Low_complexity 1 21 0 1 1303 1479 134 0 20 chr12 94111530 94111781 -27145749 + Lx LINE L1 6402 6647 -7 1 1303 2025 198 47 5 chr12 94111878 94112280 -27145250 + MTC LTR MaLR 1 419 -2 1 1303 4152 91 0 3 chr12 94112646 94113230 -27144300 - L1_Mur1 LINE L1 -744 5142 4561 1 1303 4595 136 14 3 chr12 94113230 94113951 -27143579 + Lx3B LINE L1 6241 6969 -4 1 1303 5609 43 6 0 chr12 94113955 94114636 -27142894 + L1Md_F2 LINE L1 5882 6566 -16 1 1303 23 54 0 0 chr12 94114636 94114673 -27142857 + AT_rich Low_complexity Low_complexity 1 37 0 1 1303 391 347 141 40 chr12 94116378 94116804 -27140726 - L1ME3 LINE L1 -67 6095 5627 1 1303 302 387 6 55 chr12 94118621 94118804 -27138726 - B3A SINE B2 -16 182 9 1 1303 2058 122 9 32 chr12 94119209 94119549 -27137981 - Lx LINE L1 -7 6647 6316 1 1303 1046 78 0 0 chr12 94119986 94120127 -27137403 - L1_Mus1 LINE L1 -564 6003 5863 1 1303 4222 68 2 0 chr12 94120127 94120667 -27136863 + L1_Mus1 LINE L1 6027 6567 0 1 1303 1693 140 0 4 chr12 94120706 94120972 -27136558 + Lx2 LINE L1 6412 6676 -321 1 1303 10672 62 2 2 chr12 94120979 94122307 -27135223 - RLTR3_Mm LTR ERVK 0 1328 1 1 1303 61123 43 1 0 chr12 94122307 94129552 -27127978 - MMTV-int LTR ERVK 0 7253 1 1 1303 10672 62 2 2 chr12 94129552 94130880 -27126650 - RLTR3_Mm LTR ERVK 0 1328 1 1 1303 1855 137 33 0 chr12 94130883 94131190 -27126340 + Lx2 LINE L1 6681 6997 0 1 1303 318 285 89 0 chr12 94131832 94131955 -27125575 - MER121 Unknown Unknown -140 272 139 1 1303 186 133 0 0 chr12 94132457 94132487 -27125043 + (ATG)n Simple_repeat Simple_repeat 3 32 0 1 1303 447 387 55 38 chr12 94132846 94133190 -27124340 - ORR1E LTR MaLR -5 354 5 1 1303 222 62 0 0 chr12 94134220 94134252 -27123278 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1303 236 164 36 18 chr12 94135673 94135729 -27121801 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 1 1303 261 319 57 25 chr12 94136106 94136228 -27121302 + MLT1A1 LTR MaLR 283 408 0 1 1303 597 366 54 31 chr12 94136312 94136704 -27120826 + MLT-int LTR MaLR 160 560 -1175 1 1303 33096 86 6 4 chr12 94136786 94141209 -27116321 - L1Md_F2 LINE L1 -661 5921 1494 1 1303 2199 71 10 10 chr12 94141209 94141522 -27116008 - L1Md_F2 LINE L1 0 6582 6270 1 1303 33096 119 49 1 chr12 94141522 94142591 -27114939 - L1Md_F2 LINE L1 -4390 1493 364 1 1303 1344 225 67 13 chr12 94142671 94143093 -27114437 - RMER6D LTR ERVK 0 720 186 1 1303 1181 297 28 79 chr12 94143717 94143870 -27113660 + MTD LTR MaLR 1 132 -287 1 1303 1652 92 0 4 chr12 94143870 94144100 -27113430 - L1_Mus1 LINE L1 0 6567 6339 1 1303 1181 297 28 79 chr12 94144100 94144374 -27113156 + MTD LTR MaLR 133 406 -13 1 1303 450 154 0 0 chr12 94144789 94144867 -27112663 + CT-rich Low_complexity Low_complexity 3 80 0 1 1303 1025 125 0 0 chr12 94145220 94145364 -27112166 - B1_Mus1 SINE Alu -2 146 3 1 1303 387 0 0 0 chr12 94145624 94145667 -27111863 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1303 21 57 0 0 chr12 94147380 94147415 -27110115 + AT_rich Low_complexity Low_complexity 1 35 0 1 1303 261 241 0 0 chr12 94149873 94149927 -27107603 - 5S rRNA rRNA -66 55 2 1 1303 444 19 0 0 chr12 94150121 94150174 -27107356 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1 1303 1073 103 7 0 chr12 94150174 94150319 -27107211 - B1_Mus1 SINE Alu -1 147 2 1 1303 1306 202 141 25 chr12 94150331 94150651 -27106879 + ORR1B2 LTR MaLR 9 365 -2 1 1303 347 0 23 0 chr12 94150965 94151008 -27106522 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1303 315 0 0 0 chr12 94153187 94153222 -27104308 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1303 498 72 12 23 chr12 94153222 94153307 -27104223 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1303 207 114 0 0 chr12 94153310 94153345 -27104185 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1303 318 342 18 18 chr12 94153954 94154067 -27103463 - L2 LINE L2 -582 2837 2725 1 1303 496 281 194 48 chr12 94154977 94155183 -27102347 + RMER15 LTR ERVL 325 560 -15 1 1303 2596 52 0 0 chr12 94156675 94157002 -27100528 - L1_Mus1 LINE L1 -503 6064 5738 1 1303 3753 67 15 0 chr12 94157002 94157483 -27100047 + L1_Mus1 LINE L1 6080 6567 0 1 1303 302 259 168 9 chr12 94157775 94157888 -27099642 - MLT1A1 LTR MaLR -219 189 59 2 1303 1768 181 3 3 chr12 94158398 94158720 -27098810 - Lx2A1 LINE L1 -10 6998 6677 2 1303 805 135 0 20 chr12 94158713 94158864 -27098666 + Lx LINE L1 6503 6650 -4 2 1303 1996 202 5 0 chr12 94158864 94159235 -27098295 + L1_Mur1 LINE L1 5297 5669 -217 2 1303 225 273 83 0 chr12 94159821 94159953 -27097577 + L1MA6 LINE L1 6030 6172 -128 2 1303 37 23 0 0 chr12 94160055 94160099 -27097431 + AT_rich Low_complexity Low_complexity 1 44 0 2 1303 418 209 23 17 chr12 94160206 94160381 -27097149 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 2 1303 22 56 0 0 chr12 94161082 94161118 -27096412 + AT_rich Low_complexity Low_complexity 1 36 0 2 1303 24 0 0 0 chr12 94161515 94161539 -27095991 + AT_rich Low_complexity Low_complexity 1 24 0 2 1303 322 71 0 0 chr12 94161599 94161641 -27095889 + U2 snRNA snRNA 1 42 -146 2 1303 509 267 28 72 chr12 94161690 94161940 -27095590 - L1MEf LINE L1 -5282 918 680 2 1303 531 112 0 0 chr12 94162009 94162098 -27095432 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1303 210 118 0 0 chr12 94162880 94162914 -27094616 + (ATG)n Simple_repeat Simple_repeat 2 35 0 2 1303 25 51 0 0 chr12 94163231 94163270 -27094260 + AT_rich Low_complexity Low_complexity 1 39 0 2 1303 23 0 0 0 chr12 94164061 94164084 -27093446 + AT_rich Low_complexity Low_complexity 1 23 0 2 1303 205 175 0 0 chr12 94164192 94164232 -27093298 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 1303 2448 132 60 21 chr12 94164238 94164672 -27092858 - Lx LINE L1 -1 6653 6203 2 1303 384 88 0 0 chr12 94164825 94164882 -27092648 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1303 842 128 0 11 chr12 94166481 94166663 -27090867 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1303 24 0 0 0 chr12 94167794 94167818 -27089712 + AT_rich Low_complexity Low_complexity 1 24 0 2 1303 262 365 17 34 chr12 94168259 94168378 -27089152 - B1F SINE Alu -1 148 32 2 1303 1129 320 21 26 chr12 94168380 94168759 -27088771 - MTEa LTR MaLR 0 379 3 2 1303 280 295 105 0 chr12 94168900 94168995 -27088535 + MLT1A0 LTR MaLR 52 156 -209 2 1303 870 45 0 0 chr12 94170732 94170843 -27086687 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 2 1303 637 296 65 35 chr12 94170853 94171230 -27086300 - Lx5 LINE L1 -733 6727 6125 2 1303 32 67 0 0 chr12 94171466 94171526 -27086004 + AT_rich Low_complexity Low_complexity 1 60 0 2 1303 499 313 75 35 chr12 94171554 94171882 -27085648 + MLT1A0 LTR MaLR 4 363 -2 2 1303 426 331 47 0 chr12 94172678 94172805 -27084725 + B3 SINE B2 47 179 -37 2 1303 2152 238 30 0 chr12 94172984 94173421 -27084109 + Lx5 LINE L1 6601 7050 0 2 1303 240 226 18 70 chr12 94174668 94174782 -27082748 - L1ME2z LINE L1 -28 6416 6309 2 1303 336 336 8 57 chr12 94175601 94175619 -27081911 - Lx8 LINE L1 -198 7275 7258 2 1303 4052 179 6 43 chr12 94175619 94176456 -27081074 - RLTR13D1 LTR ERVK 0 806 1 2 1303 336 336 8 57 chr12 94176456 94176560 -27080970 - Lx8 LINE L1 -216 7257 7159 2 1303 555 314 88 9 chr12 94176579 94176807 -27080723 - Lx8 LINE L1 -992 6481 6236 2 1303 1884 183 51 3 chr12 94177287 94177637 -27079893 + ORR1B2 LTR MaLR 1 367 0 2 1303 1886 168 15 6 chr12 94177661 94178003 -27079527 - Lx2 LINE L1 -7 6990 6646 2 1303 749 296 18 40 chr12 94179699 94179921 -27077609 - ID_B1 SINE B4 0 224 8 2 1303 361 411 104 31 chr12 94180076 94180402 -27077128 - MER21B LTR ERV1 -415 448 99 2 1303 6801 141 30 26 chr12 94180503 94181756 -27075774 - Lx4B LINE L1 -359 5518 4261 2 1303 7120 196 31 10 chr12 94181755 94183255 -27074275 + Lx4B LINE L1 5516 7054 -4 2 1303 1029 113 0 7 chr12 94183278 94183414 -27074116 + B1_Mus1 SINE Alu 3 138 -10 2 1303 182 37 0 36 chr12 94183414 94183442 -27074088 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1303 441 257 9 0 chr12 94183875 94183988 -27073542 + Lx8 LINE L1 6318 6431 -1042 2 1303 310 348 17 8 chr12 94184183 94184405 -27073125 - L1MC4a LINE L1 -1199 6586 6365 2 1303 390 42 0 0 chr12 94184432 94184480 -27073050 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1303 666 332 58 8 chr12 94184634 94184895 -27072635 - Lx8 LINE L1 -153 7320 7047 2 1303 236 292 139 19 chr12 94185130 94185238 -27072292 + RMER5 LTR ERV1 143 263 -271 2 1303 316 253 57 11 chr12 94185383 94185471 -27072059 + RMER5 LTR ERV1 432 523 -11 2 1303 310 291 83 27 chr12 94185591 94185726 -27071804 - B1F SINE Alu -22 127 2 2 1303 188 135 0 26 chr12 94187045 94187083 -27070447 + (TATG)n Simple_repeat Simple_repeat 3 39 0 2 1303 25 51 0 0 chr12 94188169 94188208 -27069322 + AT_rich Low_complexity Low_complexity 1 39 0 2 1303 24 32 0 0 chr12 94188306 94188337 -27069193 + AT_rich Low_complexity Low_complexity 1 31 0 2 1303 1741 241 21 38 chr12 94188665 94189083 -27068447 + MTD LTR MaLR 1 411 -8 2 1303 27 0 0 0 chr12 94189562 94189589 -27067941 + AT_rich Low_complexity Low_complexity 1 27 0 2 1303 430 325 60 1 chr12 94192288 94192495 -27065035 + Lx9 LINE L1 6879 7227 -417 2 1303 423 0 0 0 chr12 94192583 94192630 -27064900 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1303 353 189 92 28 chr12 94193220 94193329 -27064201 - Lx9 LINE L1 -7 7637 7522 2 1303 1423 264 81 0 chr12 94193324 94193718 -27063812 - Lx9 LINE L1 -258 7386 6961 2 1303 27 0 0 0 chr12 94194232 94194259 -27063271 + AT_rich Low_complexity Low_complexity 1 27 0 2 1303 1774 31 123 0 chr12 94195321 94195549 -27061981 - L1_Mus2 LINE L1 -709 5857 5602 2 1303 5323 75 5 23 chr12 94195549 94195728 -27061802 + L1_Mus2 LINE L1 5832 6011 -555 2 1303 1090 76 0 33 chr12 94195728 94195878 -27061652 + B1_Mm SINE Alu 1 145 -2 2 1303 407 28 40 27 chr12 94195878 94195952 -27061578 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 2 1303 5323 75 5 23 chr12 94195952 94196518 -27061012 + L1_Mus2 LINE L1 6012 6564 -2 2 1303 486 228 52 9 chr12 94196519 94196707 -27060823 - Lx9 LINE L1 -418 7226 6959 2 1303 331 198 138 11 chr12 94196704 94196791 -27060739 + Lx9 LINE L1 7380 7477 -167 2 1303 31 26 0 0 chr12 94196857 94196895 -27060635 + AT_rich Low_complexity Low_complexity 1 38 0 2 1303 1458 129 25 8 chr12 94197011 94197254 -27060276 + L1_Mus2 LINE L1 6316 6562 -4 2 1303 21 0 0 0 chr12 94197254 94197275 -27060255 + AT_rich Low_complexity Low_complexity 1 21 0 2 1303 195 42 0 0 chr12 94197333 94197357 -27060173 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1303 26 0 0 0 chr12 94197463 94197489 -27060041 + AT_rich Low_complexity Low_complexity 1 26 0 2 1303 182 217 85 21 chr12 94197708 94197755 -27059775 + L3 LINE CR1 117 166 -4323 2 1303 647 238 0 1 chr12 94198027 94198166 -27059364 + Lx7 LINE L1 5583 5754 -1942 2 1303 180 0 0 0 chr12 94198604 94198624 -27058906 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 2 1303 574 291 44 48 chr12 94202060 94202293 -27055237 - ORR1E LTR MaLR -27 352 97 2 1303 2253 118 6 22 chr12 94202307 94202670 -27054860 - L1_Mus3 LINE L1 -16 6622 6266 2 1303 276 355 56 21 chr12 94202920 94203064 -27054466 + B1F2 SINE Alu 1 149 0 2 1303 214 337 12 0 chr12 94203073 94203159 -27054371 + ID SINE ID 1 87 -137 2 1303 350 225 91 19 chr12 94203424 94203578 -27053952 - Lx9 LINE L1 -8 7636 7472 2 1303 207 0 0 0 chr12 94203789 94203812 -27053718 + (GGAAA)n Simple_repeat Simple_repeat 3 25 0 2 1303 246 81 0 0 chr12 94205497 94205534 -27051996 + (ATG)n Simple_repeat Simple_repeat 2 38 0 2 1303 231 114 0 0 chr12 94205697 94205732 -27051798 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1303 1138 82 0 0 chr12 94205732 94205878 -27051652 - B1_Mus2 SINE Alu 0 147 2 2 1303 182 130 0 61 chr12 94206308 94206357 -27051173 + (CTG)n Simple_repeat Simple_repeat 2 47 0 2 1303 740 216 6 97 chr12 94206838 94207014 -27050516 + B3 SINE B2 45 216 0 2 1303 251 357 9 0 chr12 94207131 94207243 -27050287 + (CAT)n Simple_repeat Simple_repeat 2 114 0 2 1303 190 274 0 0 chr12 94207252 94207303 -27050227 - L2a LINE L2 -14 3412 3362 2 1303 411 354 64 21 chr12 94207523 94207806 -27049724 - MER5C DNA MER1_type -12 301 7 2 1303 212 270 139 10 chr12 94208074 94208175 -27049355 + MIR SINE MIR 139 252 -10 2 1303 237 361 120 0 chr12 94209045 94209153 -27048377 - Cheshire DNA MER1_type -2143 277 157 2 1303 1149 95 0 0 chr12 94210066 94210213 -27047317 - B1_Mus2 SINE Alu 0 147 1 2 1303 917 333 72 44 chr12 94211924 94212399 -27045131 + Lx8 LINE L1 6826 7313 -160 2 1303 308 152 15 0 chr12 94212408 94212474 -27045056 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1303 183 213 0 0 chr12 94212477 94212552 -27044978 + GA-rich Low_complexity Low_complexity 1 75 0 2 1303 39 50 0 0 chr12 94212639 94212699 -27044831 + AT_rich Low_complexity Low_complexity 1 60 0 2 1303 615 51 0 0 chr12 94213093 94213172 -27044358 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 2 1303 224 292 194 20 chr12 94213426 94213524 -27044006 + PB1D9 SINE Alu 2 116 -4 2 1303 702 302 107 32 chr12 94214202 94214708 -27042822 + L1MEc LINE L1 369 912 -5488 2 1303 306 361 64 18 chr12 94214904 94215124 -27042406 + LTR16C LTR ERVL 230 459 -30 2 1303 806 257 46 5 chr12 94215631 94215850 -27041680 - Lx6 LINE L1 -2 7458 7231 2 1303 294 260 123 68 chr12 94215853 94216097 -27041433 + MTE2a-int LTR MaLR 1078 1252 -6 2 1303 749 314 45 92 chr12 94216121 94216464 -27041066 + MTE2a LTR MaLR 18 357 -62 2 1303 1933 261 18 10 chr12 94216479 94216978 -27040552 - Lx5 LINE L1 0 7050 6548 2 1303 26 64 0 0 chr12 94217027 94217074 -27040456 + AT_rich Low_complexity Low_complexity 1 47 0 2 1303 1607 229 9 3 chr12 94217085 94217422 -27040108 - Lx5 LINE L1 -501 6549 6211 2 1303 1101 200 54 18 chr12 94217433 94217713 -27039817 + Lx4A LINE L1 5706 5995 -1063 2 1303 13064 110 22 68 chr12 94217711 94220111 -27037419 + L1_Mur1 LINE L1 2826 5114 -772 2 1303 3768 73 0 2 chr12 94220106 94220580 -27036950 - L1Md_F2 LINE L1 0 5883 5410 2 1303 5059 74 1 40 chr12 94220580 94221299 -27036231 + L1Md_F2 LINE L1 5880 6570 -12 2 1303 1982 135 9 18 chr12 94221299 94221638 -27035892 + L1_Mur1 LINE L1 5102 5437 -449 2 1303 6614 65 2 0 chr12 94221634 94222475 -27035055 + L1_Mus1 LINE L1 5724 6566 -1 2 1303 337 256 101 19 chr12 94222793 94222952 -27034578 + Lx5 LINE L1 5999 6170 -880 2 1303 247 331 49 16 chr12 94224185 94224308 -27033222 - MER34 LTR ERV1 -403 139 13 3 1303 298 233 40 23 chr12 94224541 94224717 -27032813 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 3 1303 246 127 70 23 chr12 94224731 94224860 -27032670 + (TA)n Simple_repeat Simple_repeat 1 135 0 3 1303 30 69 0 0 chr12 94224880 94224938 -27032592 + AT_rich Low_complexity Low_complexity 1 58 0 3 1303 26 30 0 0 chr12 94226694 94226727 -27030803 + AT_rich Low_complexity Low_complexity 1 33 0 3 1303 7201 116 11 10 chr12 94226898 94228340 -27029190 - L1_Mus3 LINE L1 -7 6631 5191 3 1303 407 83 0 0 chr12 94228340 94228400 -27029130 - B1_Mur4 SINE Alu -90 60 1 3 1303 359 171 14 14 chr12 94228400 94228411 -27029119 - ID_B1 SINE B4 -84 140 70 3 1303 237 61 61 0 chr12 94228411 94228444 -27029086 - L1_Mur2 LINE L1 -734 5143 5109 3 1303 471 14 56 0 chr12 94229914 94229985 -27027545 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 3 1303 3489 112 57 9 chr12 94230007 94230565 -27026965 - Lx3A LINE L1 -671 6310 5726 3 1303 1562 98 21 0 chr12 94230560 94230771 -27026759 + Lx9 LINE L1 4420 4635 -1251 3 1303 324 83 0 0 chr12 94230771 94230819 -27026711 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1303 1562 98 21 0 chr12 94230819 94230841 -27026689 + Lx9 LINE L1 4636 4657 -1229 3 1303 1653 109 36 41 chr12 94230879 94231177 -27026353 - L1_Mus3 LINE L1 0 6567 6275 3 1303 7351 95 5 9 chr12 94231172 94232246 -27025284 + Lx9 LINE L1 4662 5728 -1916 3 1303 2604 241 48 46 chr12 94234107 94235084 -27022446 - RMER1B Other Other -15 1051 101 3 1303 1167 283 18 0 chr12 94235899 94236182 -27021348 - RMER1B Other Other -742 324 37 3 1303 329 287 32 0 chr12 94236588 94236682 -27020848 - RMER1B Other Other -915 151 55 3 1303 282 188 24 52 chr12 94237240 94237453 -27020077 + RMER17D LTR ERVK 297 503 -386 3 1303 322 325 89 19 chr12 94237724 94237881 -27019649 + MTD LTR MaLR 5 172 -247 3 1303 607 272 0 0 chr12 94238015 94238184 -27019346 - L1_Mur3 LINE L1 -1085 4795 4627 3 1303 867 187 68 0 chr12 94238224 94238429 -27019101 - L1_Mur3 LINE L1 -1215 4662 4445 3 1303 1809 231 39 77 chr12 94238443 94238534 -27018996 - L1_Mur3 LINE L1 -1607 4270 4212 3 1303 2078 32 4 0 chr12 94238534 94238783 -27018747 - L1Md_F2 LINE L1 -14 6568 6319 3 1303 1127 89 0 0 chr12 94238783 94238929 -27018601 - B1_Mus2 SINE Alu 0 147 2 3 1303 2052 209 46 14 chr12 94238929 94239460 -27018070 - L1_Mur3 LINE L1 -1668 4212 3672 3 1303 1728 208 26 15 chr12 94239504 94239968 -27017562 - L1_Mur3 LINE L1 -2579 3301 2833 3 162 6137 81 8 16 chr12 94239979 94240830 -27016700 + L1_Mus3 LINE L1 5793 6636 -2 3 1304 233 275 14 0 chr12 94240989 94241058 -27016472 + L1M2 LINE L1 5196 5265 -878 3 1304 443 118 0 0 chr12 94241225 94241293 -27016237 + L1_Mur1 LINE L1 5386 5453 -433 3 1304 351 280 111 77 chr12 94241328 94241656 -27015874 + L1MB5 LINE L1 5467 5827 -337 3 1304 1071 168 16 0 chr12 94241656 94241841 -27015689 + B2_Mm2 SINE B2 1 188 -7 3 1304 351 271 105 82 chr12 94241841 94241920 -27015610 + L1MB5 LINE L1 5825 5898 -276 3 1304 310 336 15 22 chr12 94241969 94242106 -27015424 + L1MB5 LINE L1 5998 6133 -51 3 1304 207 0 0 0 chr12 94243017 94243040 -27014490 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1304 247 299 89 45 chr12 94244097 94244209 -27013321 - PB1D9 SINE Alu -2 118 2 3 1304 25 0 0 0 chr12 94244287 94244312 -27013218 + AT_rich Low_complexity Low_complexity 1 25 0 3 1304 365 116 14 0 chr12 94245206 94245275 -27012255 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1304 4656 68 2 13 chr12 94246446 94247057 -27010473 - L1_Mus2 LINE L1 0 6566 5963 3 1304 4285 78 0 46 chr12 94247058 94247772 -27009758 + L1_Mus2 LINE L1 5267 5947 -619 3 1304 507 17 0 0 chr12 94247943 94248003 -27009527 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1304 930 303 79 19 chr12 94248100 94248612 -27008918 - L1_Mur3 LINE L1 -81 5766 5240 3 1304 260 300 0 0 chr12 94248837 94248917 -27008613 + Lx8 LINE L1 7392 7471 -2 3 1304 491 258 174 59 chr12 94249358 94249528 -27008002 + B3 SINE B2 5 202 -14 3 1304 21 0 0 0 chr12 94249657 94249678 -27007852 + AT_rich Low_complexity Low_complexity 1 21 0 3 1304 276 160 0 0 chr12 94250652 94250702 -27006828 - Lx8 LINE L1 -671 6802 6753 3 1304 21 36 0 0 chr12 94250784 94250812 -27006718 + AT_rich Low_complexity Low_complexity 1 28 0 3 1304 1696 318 71 3 chr12 94251010 94251642 -27005888 - Lx8 LINE L1 -212 7261 6587 3 1304 358 301 58 19 chr12 94251713 94251869 -27005661 - Lx8 LINE L1 -888 6585 6424 3 1304 194 0 39 0 chr12 94252021 94252047 -27005483 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1304 520 322 74 79 chr12 94252080 94252269 -27005261 + B3A SINE B2 5 192 -3 3 1304 641 211 33 0 chr12 94252508 94252660 -27004870 + URR1A DNA MER1_type 46 202 -24 3 1304 220 366 0 14 chr12 94252734 94252806 -27004724 + ID4 SINE ID 2 72 -11 3 1304 288 0 0 0 chr12 94252812 94252844 -27004686 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1304 1535 171 93 69 chr12 94253015 94253167 -27004363 - RLTR41 LTR ERV1 0 446 282 3 1304 371 0 0 63 chr12 94253167 94253230 -27004300 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 3 1304 1535 171 93 69 chr12 94253230 94253453 -27004077 - RLTR41 LTR ERV1 -165 281 63 3 1304 657 313 147 43 chr12 94253582 94253895 -27003635 - ORR1D2 LTR MaLR 0 370 20 3 1304 519 56 0 0 chr12 94253895 94253966 -27003564 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1304 657 313 147 43 chr12 94253966 94253979 -27003551 - ORR1D2 LTR MaLR -351 19 10 3 1304 2683 103 48 22 chr12 94253981 94254396 -27003134 - Lx3A LINE L1 -3 6978 6553 3 1304 361 296 34 47 chr12 94254763 94254912 -27002618 - RLTR11A2 LTR ERVK -380 147 1 3 1304 637 226 0 46 chr12 94256146 94256299 -27001231 - RMER5 LTR ERV1 -44 490 345 3 1304 2484 171 22 9 chr12 94256301 94256749 -27000781 - Lx3B LINE L1 -45 6928 6475 3 1304 2584 154 40 18 chr12 94256748 94257203 -27000327 + Lx3B LINE L1 6052 6516 -457 3 1304 225 186 0 0 chr12 94258841 94258884 -26998646 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1304 1622 218 33 33 chr12 94258966 94259355 -26998175 - RLTR11B LTR ERVK -64 389 1 3 1304 1338 168 9 0 chr12 94259514 94259734 -26997796 - Lx4A LINE L1 -262 6796 6575 3 1304 31387 78 8 51 chr12 94259921 94263499 -26994031 - L1Md_F2 LINE L1 0 6582 3014 3 1304 4647 42 5 12 chr12 94263499 94264082 -26993448 + L1Md_F3 LINE L1 5992 6570 -14 3 1304 31387 82 12 65 chr12 94264082 94264152 -26993378 - L1Md_F2 LINE L1 -2870 3013 3006 3 1304 6216 39 0 0 chr12 94264152 94264899 -26992631 - L1Md_A LINE L1 -1 6581 5835 3 1304 31387 89 20 57 chr12 94264899 94267521 -26990009 - L1Md_F2 LINE L1 -2878 3005 578 3 1304 396 0 0 0 chr12 94267576 94267620 -26989910 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1304 528 93 0 0 chr12 94267620 94267695 -26989835 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 1304 2610 59 27 3 chr12 94267846 94268184 -26989346 + ORR1A1 LTR MaLR 1 346 0 3 1304 268 331 37 30 chr12 94268189 94268323 -26989207 - MLT1C LTR MaLR 0 467 333 3 1304 639 340 5 0 chr12 94268747 94268962 -26988568 + ID_B1 SINE B4 2 217 -7 3 1304 24 0 0 0 chr12 94269441 94269465 -26988065 + AT_rich Low_complexity Low_complexity 1 24 0 3 1304 315 0 0 0 chr12 94269818 94269853 -26987677 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1304 620 37 0 0 chr12 94271251 94271333 -26986197 - L1Md_T LINE L1 0 6582 6501 3 1304 1939 220 29 2 chr12 94273125 94273535 -26983995 - MTC LTR MaLR 0 421 1 3 1304 483 322 46 0 chr12 94273788 94273962 -26983568 + B3 SINE B2 2 183 -33 3 1304 339 100 0 0 chr12 94274243 94274293 -26983237 - Lx LINE L1 -820 5834 5785 3 1304 261 0 0 0 chr12 94274304 94274333 -26983197 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1304 3130 119 8 44 chr12 94274426 94274951 -26982579 - Lx LINE L1 -4 6650 6145 3 1304 5550 77 8 8 chr12 94274967 94275740 -26981790 - RLTR13D1 LTR ERVK -12 843 2 3 1304 1071 177 6 0 chr12 94275740 94275921 -26981609 - Lx LINE L1 -499 6155 5974 3 1304 3648 138 11 0 chr12 94275923 94276497 -26981033 - Lx LINE L1 -104 5779 5200 3 1304 4544 121 41 16 chr12 94276497 94277201 -26980329 + Lx LINE L1 5926 6647 -7 3 1304 281 82 0 20 chr12 94277894 94277944 -26979586 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 3 1304 23 0 0 0 chr12 94278275 94278298 -26979232 + AT_rich Low_complexity Low_complexity 1 23 0 3 1304 835 76 34 23 chr12 94279089 94279264 -26978266 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 3 1304 313 389 9 0 chr12 94279272 94279380 -26978150 - PB1D10 SINE Alu -8 109 1 3 1304 192 40 0 0 chr12 94281151 94281176 -26976354 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 3 1304 306 296 104 71 chr12 94281439 94281621 -26975909 + B2_Mm2 SINE B2 8 195 0 3 1304 22 0 0 0 chr12 94282286 94282308 -26975222 + AT_rich Low_complexity Low_complexity 1 22 0 3 1304 4440 147 54 0 chr12 94282315 94283052 -26974478 - Lx4A LINE L1 -2 7056 6280 3 1304 201 396 53 40 chr12 94283896 94284122 -26973408 + MIRb SINE MIR 28 256 -12 3 1304 228 67 0 0 chr12 94285648 94285678 -26971852 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1304 378 91 0 0 chr12 94285678 94285732 -26971798 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1304 26 30 0 0 chr12 94286089 94286122 -26971408 + AT_rich Low_complexity Low_complexity 1 33 0 3 1304 21 0 0 0 chr12 94286506 94286527 -26971003 + AT_rich Low_complexity Low_complexity 1 21 0 3 1304 258 32 0 0 chr12 94286578 94286609 -26970921 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 3 1304 635 120 9 0 chr12 94286609 94286717 -26970813 + (TC)n Simple_repeat Simple_repeat 2 110 0 3 1304 228 77 38 19 chr12 94286797 94286850 -26970680 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1304 39 38 0 0 chr12 94286857 94286910 -26970620 + AT_rich Low_complexity Low_complexity 1 53 0 3 1304 393 22 0 0 chr12 94287104 94287150 -26970380 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 3 1304 1175 95 26 11 chr12 94287152 94287343 -26970187 - L1_Mus3 LINE L1 -16 6622 6429 3 1304 276 30 0 0 chr12 94288524 94288557 -26968973 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1304 459 128 0 0 chr12 94288663 94288749 -26968781 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 1304 201 196 0 0 chr12 94288811 94288857 -26968673 + T-rich Low_complexity Low_complexity 1 46 0 3 1304 22 35 0 0 chr12 94289533 94289562 -26967968 + AT_rich Low_complexity Low_complexity 1 29 0 3 1304 242 250 99 62 chr12 94289637 94289718 -26967812 - ORR1E LTR MaLR -6 353 270 3 1304 329 82 0 0 chr12 94290364 94290413 -26967117 + B1_Mm SINE Alu 99 147 0 3 1304 410 269 14 0 chr12 94291981 94292122 -26965408 + Lx7 LINE L1 7282 7424 -272 3 1304 34109 88 5 4 chr12 94292770 94298897 -26958633 - L1Md_F2 LINE L1 -15 6567 217 3 1304 4098 278 75 17 chr12 94299033 94299492 -26958038 - Lx6 LINE L1 -188 7272 6781 4 1304 6309 161 20 10 chr12 94299492 94300648 -26956882 + Lx2 LINE L1 5831 6997 0 4 1304 4098 278 75 17 chr12 94300648 94301474 -26956056 - Lx6 LINE L1 -680 6780 5913 4 1304 267 103 0 0 chr12 94301820 94301859 -26955671 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1304 207 0 0 0 chr12 94302759 94302782 -26954748 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1304 427 266 246 11 chr12 94302916 94303091 -26954439 + ID_B1 SINE B4 2 217 -7 4 1304 222 211 19 0 chr12 94303124 94303195 -26954335 + GA-rich Low_complexity Low_complexity 1 72 0 4 1304 4425 148 12 25 chr12 94303349 94304116 -26953414 - Lx3A LINE L1 0 6981 6225 4 1304 34 65 0 0 chr12 94304489 94304551 -26952979 + AT_rich Low_complexity Low_complexity 1 62 0 4 1304 194 81 27 0 chr12 94304758 94304795 -26952735 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1304 1055 88 0 0 chr12 94304795 94304932 -26952598 - B1_Mus1 SINE Alu -10 138 2 4 1304 313 294 96 72 chr12 94304952 94305161 -26952369 + L1MC4 LINE L1 1449 1662 -4553 4 1304 404 301 56 51 chr12 94305284 94305480 -26952050 + ORR1E LTR MaLR 1 197 -162 4 1304 5060 150 4 6 chr12 94305820 94306657 -26950873 + Lx LINE L1 5651 6451 -203 4 1304 467 270 88 55 chr12 94306658 94306987 -26950543 + L1MC4 LINE L1 2045 2384 -3831 4 1304 8734 143 13 18 chr12 94307450 94309193 -26948337 + Lx2 LINE L1 5262 6997 0 4 1304 1896 206 53 5 chr12 94309823 94310237 -26947293 + RMER20A LTR ERVK 1 434 -82 4 1304 209 100 50 0 chr12 94310280 94310320 -26947210 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 4 1304 257 380 23 23 chr12 94311024 94311199 -26946331 - MIR SINE MIR -24 238 64 4 1304 376 278 31 0 chr12 94312191 94312288 -26945242 + MTEb LTR MaLR 279 378 -1 4 1304 21 0 0 0 chr12 94312700 94312721 -26944809 + AT_rich Low_complexity Low_complexity 1 21 0 4 1304 226 229 0 32 chr12 94312978 94313041 -26944489 + CT-rich Low_complexity Low_complexity 3 63 0 4 1304 275 0 29 0 chr12 94314336 94314371 -26943159 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4 1304 8971 10 0 0 chr12 94315134 94316864 -26940666 - L1Md_T LINE L1 0 6582 4876 4 1304 23 68 0 0 chr12 94317395 94317439 -26940091 + AT_rich Low_complexity Low_complexity 1 44 0 4 1304 852 176 6 0 chr12 94317516 94317681 -26939849 + L1_Mur1 LINE L1 4889 5054 -832 4 1304 34 24 0 0 chr12 94317740 94317781 -26939749 + AT_rich Low_complexity Low_complexity 1 41 0 4 1304 447 130 0 0 chr12 94318297 94318374 -26939156 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1304 343 361 74 0 chr12 94318700 94318822 -26938708 + ID_B1 SINE B4 80 210 -14 4 1304 25 0 0 0 chr12 94319468 94319493 -26938037 + AT_rich Low_complexity Low_complexity 1 25 0 4 1304 451 255 30 65 chr12 94320729 94320897 -26936633 - RLTR43A LTR ERVK -2 362 201 4 1304 1252 263 29 20 chr12 94321419 94321761 -26935769 + ORR1D1 LTR MaLR 3 347 -27 4 1304 198 0 0 0 chr12 94321767 94321789 -26935741 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1304 21 36 0 0 chr12 94321885 94321913 -26935617 + AT_rich Low_complexity Low_complexity 1 28 0 4 1304 561 287 70 25 chr12 94322252 94322452 -26935078 + ORR1E LTR MaLR 1 209 -150 4 1304 245 333 40 20 chr12 94322491 94322592 -26934938 + ORR1E LTR MaLR 267 369 -10 4 1304 418 290 37 69 chr12 94323453 94323683 -26933847 + Lx8 LINE L1 7000 7236 -237 4 1304 450 0 0 0 chr12 94323765 94323815 -26933715 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1304 567 0 0 0 chr12 94323815 94323877 -26933653 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1304 897 209 87 43 chr12 94324826 94325056 -26932474 + RMER1C Other Other 796 1035 -307 4 1304 470 286 70 81 chr12 94325244 94325529 -26932001 + MLT1C LTR MaLR 5 286 -181 4 1304 1178 68 0 0 chr12 94325558 94325704 -26931826 - B1_Mus2 SINE Alu 0 147 2 4 1304 336 64 0 0 chr12 94326043 94326090 -26931440 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 1304 210 150 0 48 chr12 94326901 94326943 -26930587 + L3 LINE CR1 3721 3760 -729 4 1304 200 200 40 0 chr12 94328551 94328601 -26928929 + A-rich Low_complexity Low_complexity 3 54 0 4 1304 2003 203 73 13 chr12 94328640 94329105 -26928425 + Lx3C LINE L1 6482 6974 -2 4 1304 249 33 0 0 chr12 94329806 94329836 -26927694 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1304 899 206 132 15 chr12 94331026 94331352 -26926178 + Lx9 LINE L1 7280 7643 -1 4 1304 255 263 25 62 chr12 94331543 94331624 -26925906 - MER67B LTR ERV1 -581 80 3 4 1304 1319 188 48 0 chr12 94332205 94332455 -26925075 - L1_Mur2 LINE L1 -702 5175 4914 4 1304 5611 123 8 22 chr12 94332455 94333355 -26924175 + Lx2 LINE L1 6108 6994 -3 4 1304 648 259 0 26 chr12 94333543 94333694 -26923836 - B1_Mur1 SINE Alu -1 148 2 4 1304 26 0 0 0 chr12 94333780 94333806 -26923724 + AT_rich Low_complexity Low_complexity 1 26 0 4 1304 319 325 112 6 chr12 94334187 94334348 -26923182 - MER20 DNA MER1_type -38 181 4 4 1304 209 33 0 32 chr12 94334359 94334390 -26923140 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1304 261 0 0 0 chr12 94334790 94334819 -26922711 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1304 30 27 0 0 chr12 94335951 94335988 -26921542 + AT_rich Low_complexity Low_complexity 1 37 0 4 1304 22 35 0 0 chr12 94336861 94336890 -26920640 + AT_rich Low_complexity Low_complexity 1 29 0 4 1304 275 274 10 31 chr12 94337521 94337619 -26919911 + CT-rich Low_complexity Low_complexity 5 100 0 4 1304 719 188 7 32 chr12 94337620 94337774 -26919756 - RMER4A LTR ERVK 0 466 317 4 1304 2100 164 70 64 chr12 94337790 94338245 -26919285 - RMER4A LTR ERVK -6 460 3 4 1304 191 146 24 0 chr12 94338514 94338555 -26918975 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 1304 21 0 0 0 chr12 94339004 94339025 -26918505 + AT_rich Low_complexity Low_complexity 1 21 0 4 1304 1276 217 52 3 chr12 94340601 94340888 -26916642 + ORR1B1 LTR MaLR 1 301 -93 4 1304 4266 112 9 6 chr12 94340936 94341586 -26915944 - Lx3A LINE L1 0 6981 6330 4 1304 1821 109 31 22 chr12 94341586 94341905 -26915625 - RLTRETN_Mm LTR ERVK 0 322 1 4 1304 14040 25 25 8 chr12 94341905 94343588 -26913942 - MMETn-int LTR ERVK 0 4844 3133 4 1304 14623 184 28 23 chr12 94343584 94347280 -26910250 - ETnERV-int LTR ERVK -2565 3602 1 4 1304 1808 109 31 22 chr12 94347280 94347599 -26909931 - RLTRETN_Mm LTR ERVK 0 322 1 4 1304 683 108 0 0 chr12 94347599 94347692 -26909838 - Lx3A LINE L1 -646 6335 6243 4 1304 1156 68 0 0 chr12 94347713 94347859 -26909671 + B1_Mus2 SINE Alu 2 147 0 4 1304 311 0 0 25 chr12 94347865 94347905 -26909625 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1304 2514 97 75 36 chr12 94347906 94348345 -26909185 + Lx3A LINE L1 5785 6240 -741 4 1304 553 159 47 0 chr12 94348345 94348452 -26909078 + ORR1A4 LTR MaLR 209 320 -9 4 1304 180 0 0 0 chr12 94348475 94348495 -26909035 + (ATG)n Simple_repeat Simple_repeat 2 21 0 4 1304 621 229 126 13 chr12 94348495 94348614 -26908916 - Lx9 LINE L1 -28 7616 7480 4 1304 378 0 0 0 chr12 94348614 94348656 -26908874 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1304 621 229 126 13 chr12 94348656 94348702 -26908828 - Lx9 LINE L1 -165 7479 7425 4 1304 198 0 0 0 chr12 94348702 94348724 -26908806 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 1304 621 229 126 13 chr12 94348724 94348787 -26908743 - Lx9 LINE L1 -220 7424 7361 4 1304 313 258 6 165 chr12 94348779 94348937 -26908593 + Lx9 LINE L1 7245 7377 -267 4 1304 249 33 0 0 chr12 94349388 94349418 -26908112 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1304 2612 208 30 0 chr12 94349619 94350153 -26907377 - Lx4B LINE L1 -839 6219 5670 4 1304 2454 214 71 6 chr12 94350155 94350828 -26906702 + Lx4B LINE L1 6225 7020 -38 4 1304 198 0 0 0 chr12 94350843 94350865 -26906665 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 4 1304 726 255 55 28 chr12 94350865 94351124 -26906406 + Lx4B LINE L1 6356 6648 -410 4 1304 495 194 9 37 chr12 94351166 94351273 -26906257 - Lx7 LINE L1 -856 6840 6737 4 1304 392 91 0 38 chr12 94351281 94351361 -26906169 + (T)n Simple_repeat Simple_repeat 1 77 0 4 1304 2337 249 71 17 chr12 94351361 94351994 -26905536 - Lx7 LINE L1 -963 6733 6067 4 1304 399 285 112 34 chr12 94352166 94352274 -26905256 + B4A SINE B4 100 224 -68 4 1304 210 37 0 0 chr12 94352274 94352301 -26905229 + (AAATG)n Simple_repeat Simple_repeat 4 30 0 4 1304 399 285 112 34 chr12 94352301 94352370 -26905160 + B4A SINE B4 225 290 -2 4 1304 26 30 0 0 chr12 94352664 94352697 -26904833 + AT_rich Low_complexity Low_complexity 1 33 0 4 1304 185 0 47 70 chr12 94352881 94352924 -26904606 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 4 1304 304 333 28 9 chr12 94353105 94353214 -26904316 + RSINE1 SINE B4 47 157 -8 4 1304 300 229 75 92 chr12 94354306 94354426 -26903104 + B2_Mm2 SINE B2 3 120 -75 4 1304 254 203 47 0 chr12 94354633 94354697 -26902833 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1304 22 56 0 0 chr12 94354697 94354733 -26902797 + AT_rich Low_complexity Low_complexity 1 36 0 4 1304 30 0 0 0 chr12 94356004 94356034 -26901496 + AT_rich Low_complexity Low_complexity 1 30 0 4 1304 266 295 13 67 chr12 94356291 94356440 -26901090 - MER2 DNA MER2_type -124 221 81 4 1304 294 345 26 9 chr12 94358488 94358602 -26898928 - PB1D10 SINE Alu -1 116 1 4 1304 330 273 173 0 chr12 94358638 94358788 -26898742 - L1MC3 LINE L1 -243 7542 7367 4 1304 291 28 0 0 chr12 94358953 94358989 -26898541 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1304 426 20 0 0 chr12 94359037 94359088 -26898442 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4 1304 741 291 11 11 chr12 94359153 94359344 -26898186 - RMER30 DNA MER1_type -2 200 10 4 1304 2337 39 0 0 chr12 94360216 94360499 -26897031 + L1Md_A LINE L1 6300 6582 0 4 1304 219 114 0 0 chr12 94361300 94361335 -26896195 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1304 317 131 16 0 chr12 94361335 94361396 -26896134 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1304 387 0 0 0 chr12 94361660 94361703 -26895827 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1304 312 351 35 0 chr12 94361744 94361858 -26895672 - MLT1A0 LTR MaLR -222 143 26 4 1304 198 0 0 0 chr12 94361888 94361910 -26895620 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1304 398 287 38 62 chr12 94362355 94362515 -26895015 - Charlie1 DNA MER1_type -2619 162 7 5 1304 1144 71 0 0 chr12 94362957 94363098 -26894432 - B1_Mus2 SINE Alu -5 142 2 5 1304 359 288 44 22 chr12 94365061 94365194 -26892336 - RMER15 LTR ERVL -15 560 425 5 1304 977 307 53 39 chr12 94365194 94365553 -26891977 - MTE2a LTR MaLR 0 379 16 5 1304 25 0 0 0 chr12 94365849 94365874 -26891656 + AT_rich Low_complexity Low_complexity 1 25 0 5 1304 354 324 97 49 chr12 94366790 94367118 -26890412 - MER57C2 LTR ERV1 -63 371 2 5 1304 250 241 169 0 chr12 94367351 94367434 -26890096 - RSINE1 SINE B4 -56 109 13 5 1304 888 302 139 28 chr12 94367970 94368293 -26889237 - MTEb LTR MaLR -12 367 9 5 1304 462 343 25 22 chr12 94368705 94368979 -26888551 - Lx9 LINE L1 -204 7440 7166 5 1304 2111 266 20 66 chr12 94368980 94369583 -26887947 - RMER15 LTR ERVL 0 575 1 5 1304 649 263 78 49 chr12 94369592 94369876 -26887654 - Lx9 LINE L1 -484 7160 6869 5 1304 1284 60 12 0 chr12 94370216 94370382 -26887148 + B2_Mm2 SINE B2 9 176 -19 5 1304 254 240 54 107 chr12 94370373 94370485 -26887045 + RLTR8 LTR ERVK 253 358 -7 5 1304 301 283 11 11 chr12 94370490 94370583 -26886947 - RMER15-int LTR ERVL -334 4665 4573 5 1304 396 0 0 0 chr12 94370609 94370653 -26886877 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1304 387 350 0 8 chr12 94370742 94370866 -26886664 - MTE2a LTR MaLR -198 181 59 5 1304 207 88 0 0 chr12 94370980 94371014 -26886516 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1304 306 248 35 104 chr12 94371491 94371635 -26885895 + HAL1b LINE L1 376 509 -1500 5 20 709 280 107 104 chr12 94371751 94372154 -26885376 + MLT1C LTR MaLR 60 463 -4 5 1305 2833 64 20 32 chr12 94372757 94373162 -26884368 + MTB LTR MaLR 1 400 0 5 1305 387 331 87 11 chr12 94373420 94373603 -26883927 + MER2 DNA MER2_type 1 197 -148 5 1305 189 0 0 0 chr12 94375666 94375687 -26881843 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1305 27 29 0 0 chr12 94375768 94375802 -26881728 + AT_rich Low_complexity Low_complexity 1 34 0 5 1305 1040 133 6 0 chr12 94376247 94376428 -26881102 + Lx2A1 LINE L1 6827 7008 0 5 1305 198 0 0 0 chr12 94376623 94376645 -26880885 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 5 1305 264 364 42 21 chr12 94376657 94376800 -26880730 + RMER15 LTR ERVL 383 528 -47 5 1305 3187 172 2 17 chr12 94377060 94377687 -26879843 - Lx2B LINE L1 -715 5921 5306 5 1305 6004 158 29 17 chr12 94377687 94378794 -26878736 + Lx2B LINE L1 5880 6999 -1 5 1305 952 302 40 27 chr12 94378794 94378854 -26878676 - L1MC LINE L1 -2554 5328 5260 5 1305 189 107 0 0 chr12 94379068 94379096 -26878434 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1305 248 389 21 0 chr12 94379439 94379583 -26877947 - B1_Mm SINE Alu 0 147 1 5 1305 189 0 0 0 chr12 94380542 94380563 -26876967 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1305 535 394 60 46 chr12 94382527 94383160 -26874370 + BLACKJACK DNA AcHobo 76 717 -2227 5 1305 395 258 10 0 chr12 94383142 94383239 -26874291 - BC1_Mm scRNA scRNA -53 99 2 5 1305 608 303 54 9 chr12 94383266 94383489 -26874041 + BLACKJACK DNA AcHobo 721 953 -1991 5 1305 234 339 86 41 chr12 94383642 94383798 -26873732 + BLACKJACK DNA AcHobo 1200 1358 -1586 5 1305 297 0 0 0 chr12 94383798 94383831 -26873699 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1305 234 339 86 41 chr12 94383831 94383917 -26873613 + BLACKJACK DNA AcHobo 1359 1452 -1492 5 1305 258 207 50 25 chr12 94384008 94384127 -26873403 + (TTTA)n Simple_repeat Simple_repeat 3 124 0 5 1305 24 85 0 0 chr12 94384135 94384194 -26873336 + AT_rich Low_complexity Low_complexity 1 59 0 5 1305 4300 151 71 11 chr12 94384195 94384998 -26872532 - Lx4A LINE L1 0 7058 6208 5 1305 214 297 0 30 chr12 94385071 94385137 -26872393 + GA-rich Low_complexity Low_complexity 1 64 0 5 1305 842 152 14 0 chr12 94385273 94385418 -26872112 - Lx4A LINE L1 -833 6225 6079 5 1305 3276 154 4 6 chr12 94385418 94385967 -26871563 - Lx4A LINE L1 -147 5730 5183 5 1305 6149 181 68 12 chr12 94385965 94387641 -26869889 - Lx4A LINE L1 -3276 2601 833 5 1305 551 337 48 11 chr12 94389059 94389299 -26868231 + B4 SINE B4 28 292 0 5 1305 362 309 64 114 chr12 94392306 94392649 -26864881 - ORR1D2 LTR MaLR -2 368 43 5 1305 219 146 0 0 chr12 94392823 94392864 -26864666 + (TATG)n Simple_repeat Simple_repeat 2 42 0 5 1305 655 312 58 27 chr12 94392887 94393147 -26864383 - B4A SINE B4 -23 269 2 5 1305 2440 292 34 21 chr12 94393328 94394145 -26863385 - Lx9 LINE L1 -171 7473 6646 5 1305 281 208 68 14 chr12 94394150 94394223 -26863307 - Lx9 LINE L1 -1166 6478 6402 5 1305 180 111 0 0 chr12 94395572 94395599 -26861931 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1305 491 306 12 12 chr12 94396065 94396227 -26861303 + RSINE1 SINE B4 4 165 0 5 1305 288 0 0 0 chr12 94396745 94396777 -26860753 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1305 232 274 128 87 chr12 94397395 94397591 -26859939 - LTR88b LTR Gypsy? -13 824 621 5 1305 3623 140 4 0 chr12 94398051 94398607 -26858923 - Lx LINE L1 -1 6653 6096 5 1305 390 253 0 0 chr12 94398607 94398682 -26858848 + tRNA-Asn-AAC tRNA tRNA 3 77 0 5 1305 210 150 0 0 chr12 94399531 94399571 -26857959 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1305 390 352 60 71 chr12 94399661 94399927 -26857603 - B4 SINE B4 -21 271 9 5 1305 982 262 207 42 chr12 94399935 94400509 -26857021 + Lx7 LINE L1 7028 7696 0 5 1305 6432 82 35 0 chr12 94400527 94401390 -26856140 + RLTR13B1 LTR ERVK 1 893 0 5 1305 239 321 33 117 chr12 94401426 94401546 -26855984 + B4 SINE B4 69 178 -114 5 1305 272 384 39 25 chr12 94401788 94402071 -26855459 + Charlie20a DNA Charlie 51 337 -470 5 1305 423 361 26 20 chr12 94403975 94404170 -26853360 + B4A SINE B4 3 198 -94 5 1305 374 267 40 13 chr12 94404569 94404721 -26852809 + L1MA5 LINE L1 5759 5914 -386 5 1305 383 269 26 43 chr12 94404857 94405005 -26852525 - MTEb LTR MaLR -2 377 217 5 1305 1511 365 88 62 chr12 94405073 94406214 -26851316 - MTE-int LTR MaLR -36 1544 374 5 1305 544 301 41 29 chr12 94406227 94406398 -26851132 + MTE2a LTR MaLR 207 379 0 5 1305 605 273 96 71 chr12 94407364 94407687 -26849843 + LTR29 LTR ERV1 49 379 -243 5 1305 4420 69 16 0 chr12 94408819 94409395 -26848135 + L1_Mus2 LINE L1 5982 6566 0 5 1305 432 319 26 9 chr12 94410126 94410295 -26847235 + MLT1J2 LTR MaLR 71 247 -265 5 1305 434 206 16 99 chr12 94410302 94410415 -26847115 + ORR1E LTR MaLR 143 271 -108 5 1305 664 282 49 61 chr12 94410534 94410798 -26846732 + MTE-int LTR MaLR 2 262 -1318 5 1305 480 384 43 43 chr12 94410957 94411327 -26846203 + MTE-int LTR MaLR 129 498 -1082 5 1305 569 324 33 9 chr12 94411870 94412085 -26845445 + MTE-int LTR MaLR 1220 1439 -141 5 1305 1286 167 13 9 chr12 94412666 94412890 -26844640 - URR1A DNA MER1_type -1 225 1 5 1305 180 111 0 0 chr12 94412992 94413019 -26844511 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1305 1105 225 0 5 chr12 94413559 94413782 -26843748 - URR1B DNA MER1_type -3 222 1 5 1305 2201 84 48 0 chr12 94414158 94414467 -26843063 - L1_Mus3 LINE L1 -6 6632 6309 5 1305 425 19 0 18 chr12 94414608 94414663 -26842867 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1305 304 374 79 19 chr12 94414781 94414996 -26842534 + MLT2B1 LTR ERVL 340 567 0 5 1305 463 328 112 23 chr12 94415276 94415625 -26841905 - Lx8 LINE L1 -194 7279 6900 5 1305 635 94 0 10 chr12 94416198 94416295 -26841235 + (TA)n Simple_repeat Simple_repeat 1 96 0 5 1305 991 48 0 0 chr12 94417181 94417305 -26840225 + B1_Mus1 SINE Alu 25 148 0 5 1305 211 135 40 26 chr12 94417308 94417384 -26840146 + A-rich Low_complexity Low_complexity 2 78 0 5 1305 499 224 93 93 chr12 94417793 94418009 -26839521 - B3 SINE B2 0 216 1 5 1305 208 0 62 0 chr12 94418352 94418384 -26839146 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1305 248 132 0 0 chr12 94418536 94418574 -26838956 - MIRm SINE MIR -10 266 229 5 1305 500 0 17 0 chr12 94418638 94418698 -26838832 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1305 281 135 0 19 chr12 94420464 94420517 -26837013 + CT-rich Low_complexity Low_complexity 3 54 0 5 1305 407 350 41 87 chr12 94420563 94420829 -26836701 - B4 SINE B4 -9 283 30 5 1305 193 385 62 0 chr12 94421376 94421472 -26836058 + L2b LINE L2 3273 3374 -1 5 1305 2073 179 14 3 chr12 94421855 94422219 -26835311 - RMER20B LTR ERVK -259 368 1 5 1305 2208 161 13 30 chr12 94423132 94423593 -26833937 + RLTR11B LTR ERVK 1 453 0 5 1305 356 365 292 5 chr12 94423819 94424031 -26833499 - B4 SINE B4 -16 276 4 5 1305 277 303 33 11 chr12 94424075 94424165 -26833365 + ID_B1 SINE B4 121 212 -12 5 1305 261 0 0 0 chr12 94424177 94424206 -26833324 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1305 24 32 0 0 chr12 94426358 94426389 -26831141 + AT_rich Low_complexity Low_complexity 1 31 0 5 1305 2140 127 144 8 chr12 94426558 94426955 -26830575 - RLTR44E LTR ERVK -1 451 1 5 1305 3641 202 87 70 chr12 94427588 94428475 -26829055 + RMER19B LTR ERVK 1 902 0 5 1305 23 54 0 0 chr12 94430504 94430541 -26826989 + AT_rich Low_complexity Low_complexity 1 37 0 5 1305 321 135 0 0 chr12 94430601 94430653 -26826877 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1305 223 352 14 0 chr12 94431264 94431335 -26826195 - ID4_ SINE ID -10 73 2 5 1305 25 0 0 0 chr12 94431401 94431426 -26826104 + AT_rich Low_complexity Low_complexity 1 25 0 5 1305 433 314 148 14 chr12 94432388 94432611 -26824919 - RMER20B LTR ERVK -228 399 147 5 1305 432 0 0 0 chr12 94433465 94433513 -26824017 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1305 201 74 0 0 chr12 94433517 94433544 -26823986 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1305 350 268 91 112 chr12 94433576 94433719 -26823811 - B4A SINE B4 -20 272 133 5 1305 231 88 0 0 chr12 94433969 94434003 -26823527 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 5 1305 183 80 0 0 chr12 94434094 94434119 -26823411 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 6 1305 792 192 7 0 chr12 94435535 94435681 -26821849 - B1_Mur4 SINE Alu -1 149 3 6 1305 866 116 14 7 chr12 94435943 94436090 -26821440 - Lx2A LINE L1 -6 7002 6855 6 1305 297 0 0 0 chr12 94437087 94437120 -26820410 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1305 198 0 0 0 chr12 94437861 94437883 -26819647 + (TATG)n Simple_repeat Simple_repeat 2 23 0 6 1305 3609 70 10 10 chr12 94438577 94439069 -26818461 + Lx3_Mus LINE L1 6510 7001 -8 6 1305 668 12 12 0 chr12 94440359 94440440 -26817090 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1305 1555 235 98 53 chr12 94440457 94441006 -26816524 + Lx9 LINE L1 7070 7643 -1 6 1305 21 0 0 0 chr12 94442434 94442455 -26815075 + AT_rich Low_complexity Low_complexity 1 21 0 6 1305 213 121 0 0 chr12 94442456 94442489 -26815041 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1305 2932 88 5 5 chr12 94442735 94443135 -26814395 + MTB LTR MaLR 1 400 0 6 1305 253 47 23 23 chr12 94443366 94443410 -26814120 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1305 23 33 0 0 chr12 94443473 94443503 -26814027 + AT_rich Low_complexity Low_complexity 1 30 0 6 1305 1733 214 81 13 chr12 94444107 94444501 -26813029 + MTD LTR MaLR 2 405 -14 6 1305 1679 173 30 7 chr12 94444662 94444965 -26812565 - Lx4A LINE L1 -2 7056 6747 6 1305 695 260 75 13 chr12 94445331 94445639 -26811891 + Lx9 LINE L1 7316 7642 -2 6 1305 234 128 0 0 chr12 94445759 94445798 -26811732 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 6 1305 911 127 7 0 chr12 94446960 94447110 -26810420 + (GAA)n Simple_repeat Simple_repeat 1 151 0 6 1305 284 64 21 0 chr12 94447408 94447455 -26810075 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 6 1305 23 33 0 0 chr12 94447521 94447551 -26809979 + AT_rich Low_complexity Low_complexity 1 30 0 6 1305 305 312 99 12 chr12 94447614 94447786 -26809744 + L1MC LINE L1 4776 4962 -1184 6 1305 29 0 0 0 chr12 94447799 94447828 -26809702 + AT_rich Low_complexity Low_complexity 1 29 0 6 1305 232 297 31 15 chr12 94447956 94448021 -26809509 + RSINE1 SINE B4 88 153 -12 6 1305 1651 149 114 0 chr12 94448076 94448365 -26809165 - Lx LINE L1 -6 6648 6327 6 1305 260 333 63 0 chr12 94448610 94448736 -26808794 + MER2 DNA MER2_type 89 222 -123 6 1305 208 204 39 39 chr12 94449349 94449451 -26808079 + (TTATA)n Simple_repeat Simple_repeat 4 105 0 6 1305 810 267 39 0 chr12 94450642 94450874 -26806656 + L1_Mur3 LINE L1 843 1083 -6629 6 1305 201 139 44 44 chr12 94451567 94451612 -26805918 + A-rich Low_complexity Low_complexity 3 47 0 6 1305 504 246 0 23 chr12 94451619 94451752 -26805778 + Lx7 LINE L1 7567 7696 0 6 1305 538 326 152 47 chr12 94451809 94452105 -26805425 + MTEa LTR MaLR 1 327 -52 6 1305 21 0 0 0 chr12 94452113 94452134 -26805396 + AT_rich Low_complexity Low_complexity 1 21 0 6 1305 22 35 0 0 chr12 94452652 94452681 -26804849 + AT_rich Low_complexity Low_complexity 1 29 0 6 1305 24 91 0 0 chr12 94453478 94453544 -26803986 + AT_rich Low_complexity Low_complexity 1 66 0 6 1305 801 71 0 0 chr12 94454111 94454224 -26803306 + (CA)n Simple_repeat Simple_repeat 2 114 0 6 1305 222 62 0 0 chr12 94454227 94454259 -26803271 + (CATG)n Simple_repeat Simple_repeat 4 35 0 6 1305 300 355 45 62 chr12 94454290 94454626 -26802904 + L1M5 LINE L1 4723 5052 -1094 6 1305 261 0 0 0 chr12 94454851 94454880 -26802650 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1305 4615 244 73 62 chr12 94454890 94455119 -26802411 + Lx7 LINE L1 6248 6521 -1175 6 1305 711 0 0 0 chr12 94455119 94455198 -26802332 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 1305 4615 244 73 62 chr12 94455198 94456058 -26801472 + Lx7 LINE L1 6522 7358 -338 6 1305 834 126 0 0 chr12 94456058 94456193 -26801337 + (TCCC)n Simple_repeat Simple_repeat 2 136 0 6 1305 4615 244 73 62 chr12 94456193 94456534 -26800996 + Lx7 LINE L1 7359 7694 -2 6 1305 1043 215 129 7 chr12 94457938 94458247 -26799283 - Lx9 LINE L1 0 7644 7298 6 1305 428 276 38 38 chr12 94459353 94459485 -26798045 - RSINE1 SINE B4 -28 137 6 6 1305 9407 112 10 42 chr12 94460088 94462366 -26795164 - Lx3_Mus LINE L1 0 7009 4823 6 1305 6820 93 23 2 chr12 94462357 94463360 -26794170 + Lx3_Mus LINE L1 3767 4790 -1096 6 1305 759 11 0 0 chr12 94464247 94464335 -26793195 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 1305 204 135 0 0 chr12 94464757 94464794 -26792736 + (CAA)n Simple_repeat Simple_repeat 2 38 0 6 1305 564 340 73 5 chr12 94464805 94464997 -26792533 + B3 SINE B2 6 210 -6 6 1305 441 293 148 11 chr12 94465256 94465439 -26792091 - MTD LTR MaLR -209 210 3 6 1305 375 225 134 9 chr12 94465927 94466039 -26791491 + B1_Mus1 SINE Alu 23 148 0 6 1305 1101 110 0 0 chr12 94466247 94466393 -26791137 + B1_Mus2 SINE Alu 2 147 0 6 1305 204 40 0 0 chr12 94466407 94466432 -26791098 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 1305 951 130 7 0 chr12 94467409 94467555 -26789975 + B1_Mus1 SINE Alu 2 148 0 6 1305 301 21 20 59 chr12 94467555 94467606 -26789924 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 6 1305 261 398 46 9 chr12 94467719 94467937 -26789593 + MIR SINE MIR 23 248 -14 6 1305 306 369 96 102 chr12 94468269 94468334 -26789196 - MLT1E3 LTR MaLR -9 615 557 6 1305 1614 242 63 108 chr12 94468334 94468973 -26788557 - RMER19C LTR ERVK -1 610 1 6 1305 306 359 113 64 chr12 94468973 94469455 -26788075 - MLT1E3 LTR MaLR -68 556 69 6 1305 1003 238 4 13 chr12 94470214 94470440 -26787090 + URR1B DNA MER1_type 2 225 0 6 1305 21 0 0 0 chr12 94471140 94471161 -26786369 + AT_rich Low_complexity Low_complexity 1 21 0 6 1305 280 0 50 0 chr12 94471686 94471726 -26785804 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 6 1305 39097 30 2 6 chr12 94471947 94478121 -26779409 - L1Md_T LINE L1 -1 6581 439 6 1305 6801 142 58 6 chr12 94479645 94481637 -26775893 + Lx LINE L1 4536 6632 -22 6 1305 426 20 0 0 chr12 94481637 94481688 -26775842 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1305 6195 112 79 9 chr12 94481688 94481709 -26775821 + Lx LINE L1 6633 6653 -1 6 1305 1685 220 26 56 chr12 94481817 94482207 -26775323 + ORR1C1 LTR MaLR 1 378 0 6 1305 203 244 13 0 chr12 94482235 94482313 -26775217 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 1305 21 36 0 0 chr12 94483526 94483554 -26773976 + AT_rich Low_complexity Low_complexity 1 28 0 6 1305 229 287 87 39 chr12 94483983 94484110 -26773420 + MLT1J2 LTR MaLR 282 414 -34 6 1305 187 278 56 0 chr12 94484623 94484677 -26772853 + MIR3 SINE MIR 110 166 -42 6 1305 886 173 16 16 chr12 94485689 94485871 -26771659 + L1_Mus3 LINE L1 6452 6633 -5 6 1305 314 45 0 22 chr12 94486502 94486547 -26770983 + (TTA)n Simple_repeat Simple_repeat 2 45 0 6 1305 3381 129 2 2 chr12 94486548 94487062 -26770468 - Lx3A LINE L1 -14 6967 6454 6 1305 796 221 11 7 chr12 94487075 94487274 -26770256 - Lx4B LINE L1 -242 6758 6562 6 1305 220 53 53 0 chr12 94488067 94488105 -26769425 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1305 22 35 0 0 chr12 94488118 94488147 -26769383 + AT_rich Low_complexity Low_complexity 1 29 0 6 1305 617 320 42 56 chr12 94488797 94489154 -26768376 + Lx8 LINE L1 6856 7207 -266 6 1305 2845 258 29 13 chr12 94489652 94490468 -26767062 - Lx2B LINE L1 0 6981 6134 6 1305 450 0 0 0 chr12 94490624 94490674 -26766856 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1305 216 291 44 55 chr12 94490825 94490916 -26766614 - PB1D7 SINE Alu -13 107 18 6 1305 234 0 0 0 chr12 94491433 94491459 -26766071 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 6 1305 2352 199 25 17 chr12 94491459 94491938 -26765592 - Lx2 LINE L1 -3 6994 6512 6 1305 3404 94 4 8 chr12 94492206 94492687 -26764843 - L1_Mus3 LINE L1 0 6638 6160 6 1305 210 184 127 109 chr12 94494050 94494160 -26763370 + MIRb SINE MIR 104 215 -53 6 1305 297 0 0 0 chr12 94494541 94494574 -26762956 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1305 215 330 91 25 chr12 94495313 94495434 -26762096 - MIRm SINE MIR -142 134 6 6 1305 24 0 0 0 chr12 94496096 94496120 -26761410 + AT_rich Low_complexity Low_complexity 1 24 0 6 1305 3395 140 52 4 chr12 94496121 94496678 -26760852 + Lx3B LINE L1 6318 7008 -50 6 1305 4921 34 5 2 chr12 94496678 94497267 -26760263 + L1Md_F3 LINE L1 5994 6584 0 6 1305 225 329 135 14 chr12 94497267 94497290 -26760240 + Lx3B LINE L1 7009 7030 -28 6 1305 10778 96 3 51 chr12 94497268 94500000 -26757530 + L1Md_F LINE L1 99 2594 -3289 6 163 25558 21 0 0 chr12 94500000 94502992 -26754538 + L1Md_T LINE L1 2595 5586 -297 1 1306 7994 57 0 0 chr12 94502992 94504024 -26753506 + L1Md_T LINE L1 5587 6582 0 1 1306 374 85 0 89 chr12 94504053 94504143 -26753387 + A-rich Low_complexity Low_complexity 1 82 0 2 1306 33 25 0 0 chr12 94504154 94504194 -26753336 + AT_rich Low_complexity Low_complexity 1 40 0 3 1306 205 53 0 73 chr12 94504412 94504453 -26753077 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1306 372 326 34 11 chr12 94504697 94504874 -26752656 + L1MEc LINE L1 57 237 -6163 5 1306 25 0 0 0 chr12 94507516 94507541 -26749989 + AT_rich Low_complexity Low_complexity 1 25 0 6 1306 248 322 95 99 chr12 94509387 94509670 -26747860 + MLT1E1A LTR MaLR 135 416 -264 7 1306 363 274 32 0 chr12 94509821 94509916 -26747614 + MTD LTR MaLR 1 98 -321 8 1306 714 310 10 34 chr12 94509914 94510121 -26747409 + B4A SINE B4 91 292 0 9 1306 485 105 0 10 chr12 94510818 94510914 -26746616 + (CA)n Simple_repeat Simple_repeat 1 95 0 1 1306 726 336 24 67 chr12 94510972 94511035 -26746495 + Lx8 LINE L1 6721 6780 -693 1 1306 1124 75 0 0 chr12 94511035 94511182 -26746348 - B1_Mus1 SINE Alu -1 147 1 1 1306 750 312 27 62 chr12 94511182 94511588 -26745942 + Lx9 LINE L1 6910 7301 -343 1 1306 276 102 0 0 chr12 94511824 94511873 -26745657 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1306 273 128 0 0 chr12 94512423 94512470 -26745060 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 1 1306 1421 216 71 0 chr12 94513004 94513300 -26744230 - MTC LTR MaLR 0 421 105 1 1306 810 249 5 14 chr12 94513300 94513516 -26744014 - L1_Mur2 LINE L1 -646 5231 5018 1 1306 3553 172 26 8 chr12 94513519 94514420 -26743110 + Lx5 LINE L1 5247 6177 -873 1 1306 186 43 0 0 chr12 94515478 94515501 -26742029 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1306 267 365 107 72 chr12 94516456 94516719 -26740811 - B4 SINE B4 -20 272 1 2 1306 552 294 92 151 chr12 94517954 94518443 -26739087 - Lx9 LINE L1 -749 6895 6436 2 1306 220 246 35 0 chr12 94518444 94518501 -26739029 + (TTG)n Simple_repeat Simple_repeat 1 59 0 2 1306 330 26 0 0 chr12 94518567 94518606 -26738924 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1306 22 70 0 0 chr12 94519245 94519288 -26738242 + AT_rich Low_complexity Low_complexity 1 43 0 2 1306 204 133 67 0 chr12 94519291 94519336 -26738194 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2 1306 585 169 7 14 chr12 94519337 94519475 -26738055 + (CATATA)n Simple_repeat Simple_repeat 2 138 0 2 1306 261 0 0 0 chr12 94519477 94519506 -26738024 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1306 198 71 0 0 chr12 94520131 94520159 -26737371 + (CATATA)n Simple_repeat Simple_repeat 4 31 0 2 1306 26 30 0 0 chr12 94521104 94521137 -26736393 + AT_rich Low_complexity Low_complexity 1 33 0 2 1306 383 297 30 23 chr12 94521138 94521269 -26736261 - B3 SINE B2 0 216 85 3 1306 291 335 69 25 chr12 94521199 94521401 -26736129 + MLT1D LTR MaLR 293 503 -2 3 1306 366 332 20 14 chr12 94521555 94521777 -26735753 + B4 SINE B4 3 265 -27 3 1306 549 99 0 0 chr12 94521777 94521858 -26735672 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1306 360 0 0 0 chr12 94521858 94521897 -26735633 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1306 22 56 0 0 chr12 94522475 94522511 -26735019 + AT_rich Low_complexity Low_complexity 1 36 0 3 1306 647 294 6 16 chr12 94522722 94522905 -26734625 - Lx6 LINE L1 -26 7434 7254 3 1306 22 0 0 0 chr12 94523132 94523154 -26734376 + AT_rich Low_complexity Low_complexity 1 22 0 3 1306 273 167 0 0 chr12 94523789 94523843 -26733687 + CT-rich Low_complexity Low_complexity 5 58 0 3 1306 414 0 0 0 chr12 94524648 94524694 -26732836 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1306 488 269 96 25 chr12 94525237 94525435 -26732095 - B3 SINE B2 -3 213 2 4 1306 2961 108 23 41 chr12 94525468 94525951 -26731579 + L1_Mus4 LINE L1 6163 6636 0 4 1306 776 91 0 0 chr12 94525969 94526079 -26731451 - L1_Mm LINE L1 -1513 4370 4261 4 1306 9348 84 0 1 chr12 94526075 94527301 -26730229 + L1_Mm LINE L1 4362 5586 -297 4 1306 7011 87 7 5 chr12 94527301 94528283 -26729247 + L1Md_F2 LINE L1 5587 6570 -12 4 1306 9348 84 0 1 chr12 94528283 94528303 -26729227 + L1_Mm LINE L1 5587 5606 -277 4 1306 293 333 84 73 chr12 94528551 94528742 -26728788 - B3A SINE B2 -5 193 1 4 1306 180 0 0 0 chr12 94530283 94530303 -26727227 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1306 6405 128 87 28 chr12 94530546 94531808 -26725722 + L1_Mur1 LINE L1 298 1635 -4251 4 1306 5933 31 17 1 chr12 94531808 94532520 -26725010 + L1Md_F3 LINE L1 5861 6583 -1 4 1306 6405 86 26 3 chr12 94532520 94533069 -26724461 + L1_Mur1 LINE L1 1636 2203 -3683 4 1306 4507 217 42 8 chr12 94533544 94534560 -26722970 - Lx2B LINE L1 -22 6978 5928 4 1306 4144 163 13 7 chr12 94534586 94535275 -26722255 + L1_Mur2 LINE L1 4574 5266 -611 4 1306 243 0 0 0 chr12 94535275 94535302 -26722228 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 5 1306 4144 163 13 7 chr12 94535302 94535383 -26722147 + L1_Mur2 LINE L1 5267 5349 -528 4 1306 37812 42 1 3 chr12 94535415 94541663 -26715867 - L1Md_T LINE L1 -1 6584 253 5 1306 525 32 0 0 chr12 94542400 94542463 -26715067 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 1306 3297 97 60 0 chr12 94542592 94543076 -26714454 + Lx3_Mus LINE L1 6496 7008 -1 5 1306 23 0 0 0 chr12 94543077 94543100 -26714430 + AT_rich Low_complexity Low_complexity 1 23 0 5 1306 257 169 91 15 chr12 94543521 94543587 -26713943 - L2c LINE L2 -1 3386 3316 5 1306 267 203 26 26 chr12 94543640 94543716 -26713814 + GA-rich Low_complexity Low_complexity 3 78 0 5 1306 815 168 19 25 chr12 94544581 94544740 -26712790 + URR1A DNA MER1_type 60 217 -9 5 1306 743 329 36 36 chr12 94544751 94545085 -26712445 - MT2A LTR ERVL -20 513 180 5 1306 22 0 0 0 chr12 94545399 94545421 -26712109 + AT_rich Low_complexity Low_complexity 1 22 0 5 1306 853 332 100 12 chr12 94545655 94545996 -26711534 - MTE2b LTR MaLR -4 375 5 6 1306 3459 60 0 9 chr12 94546853 94547293 -26710237 + L1_Mus1 LINE L1 6131 6566 -1 6 1306 1890 141 13 19 chr12 94547725 94548036 -26709494 - RLTR27 LTR ERVK 0 309 1 6 1306 231 381 8 8 chr12 94548054 94548173 -26709357 + Lx9 LINE L1 7070 7188 -456 6 1306 243 79 0 0 chr12 94548174 94548212 -26709318 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 6 1306 289 328 0 8 chr12 94548295 94548421 -26709109 + Lx9 LINE L1 7314 7438 -206 6 1306 580 93 10 10 chr12 94548489 94548587 -26708943 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 1306 1615 159 41 76 chr12 94548813 94549154 -26708376 + ORR1A4 LTR MaLR 1 329 0 6 1306 246 206 0 0 chr12 94550326 94550394 -26707136 + CT-rich Low_complexity Low_complexity 3 70 0 6 1306 252 268 24 24 chr12 94550646 94550730 -26706800 - Lx9 LINE L1 -213 7431 7348 6 1306 257 351 17 28 chr12 94551110 94551289 -26706241 - Lx8 LINE L1 -1192 6281 6105 6 1306 495 156 40 32 chr12 94551701 94551827 -26705703 + Lx3A LINE L1 6840 6966 -15 7 1306 609 14 0 0 chr12 94551829 94551899 -26705631 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 7 1306 291 353 113 19 chr12 94553279 94553438 -26704092 - B3 SINE B2 -6 210 37 7 1306 195 42 0 0 chr12 94553438 94553462 -26704068 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1306 427 48 0 16 chr12 94553475 94553539 -26703991 - L1Md_F2 LINE L1 -7 6575 6513 7 1306 289 29 0 0 chr12 94553541 94553575 -26703955 - L1Md_F2 LINE L1 -162 6420 6387 7 1306 5246 119 56 54 chr12 94553986 94555290 -26702240 + L1_Mus2 LINE L1 5251 6559 -7 7 1306 254 50 0 24 chr12 94555294 94555335 -26702195 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 1306 37993 8 3 0 chr12 94555942 94561260 -26696270 + L1Md_A LINE L1 249 5582 -301 7 1306 8849 10 0 0 chr12 94561264 94562258 -26695272 + L1Md_A LINE L1 5587 6580 -2 7 1306 1505 344 82 29 chr12 94562835 94563835 -26693695 - Lx8 LINE L1 -2 7471 6419 7 1306 7521 117 15 20 chr12 94564459 94565685 -26691845 + Lx3A LINE L1 5759 6977 -4 7 1306 3579 147 73 46 chr12 94565720 94566456 -26691074 - RMER6A LTR ERVK 0 756 1 8 1306 292 333 94 35 chr12 94567397 94567599 -26689931 - B3 SINE B2 0 216 3 8 1306 203 0 0 36 chr12 94567614 94567642 -26689888 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1306 8412 143 21 11 chr12 94569139 94570535 -26686995 + Lx2 LINE L1 5587 6995 -2 8 1306 218 81 0 26 chr12 94570625 94570663 -26686867 + (TA)n Simple_repeat Simple_repeat 1 37 0 8 1306 216 0 0 0 chr12 94570815 94570839 -26686691 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1306 502 283 8 94 chr12 94571545 94571779 -26685751 - B3 SINE B2 0 216 3 8 1306 269 333 94 0 chr12 94572383 94572500 -26685030 - MLT1A0 LTR MaLR -3 362 235 8 1306 294 179 32 0 chr12 94572750 94572845 -26684685 + (TA)n Simple_repeat Simple_repeat 2 99 0 8 1306 24 53 0 0 chr12 94572869 94572907 -26684623 + AT_rich Low_complexity Low_complexity 1 38 0 8 1306 298 153 47 47 chr12 94573556 94573727 -26683803 + (CAGAGA)n Simple_repeat Simple_repeat 4 174 0 9 1306 233 191 32 0 chr12 94573752 94573815 -26683715 + (CAGAGA)n Simple_repeat Simple_repeat 6 70 0 9 1306 510 91 0 0 chr12 94573820 94573897 -26683633 + (CA)n Simple_repeat Simple_repeat 2 78 0 9 1306 328 354 50 67 chr12 94574114 94574353 -26683177 + L1MEc LINE L1 507 741 -5659 9 1306 6143 113 3 50 chr12 94574714 94575716 -26681814 + L1Md_F2 LINE L1 5616 6570 -12 9 1306 5615 156 9 30 chr12 94575716 94576741 -26680789 + Lx3B LINE L1 5966 6968 -5 9 1306 5314 119 31 1 chr12 94576761 94577576 -26679954 + Lx LINE L1 5808 6646 -8 9 1306 203 0 0 36 chr12 94577630 94577658 -26679872 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 9 1306 1460 238 32 32 chr12 94578495 94578666 -26678864 + ORR1C1 LTR MaLR 1 165 -213 9 1306 189 0 0 0 chr12 94578666 94578687 -26678843 + (TC)n Simple_repeat Simple_repeat 2 22 0 9 1306 1460 238 32 32 chr12 94578687 94578892 -26678638 + ORR1C1 LTR MaLR 166 376 -2 9 1306 883 47 0 30 chr12 94578946 94579077 -26678453 + (TATAG)n Simple_repeat Simple_repeat 4 130 0 9 1306 1779 45 0 5 chr12 94579147 94579371 -26678159 + L1Md_F2 LINE L1 6357 6579 -3 1 1306 22 0 0 0 chr12 94579371 94579393 -26678137 + AT_rich Low_complexity Low_complexity 1 22 0 1 1306 240 359 40 33 chr12 94579420 94579570 -26677960 + MER21B LTR ERV1 651 801 -62 1 1306 446 297 155 39 chr12 94579692 94580288 -26677242 + L1MEc LINE L1 2747 3403 -2916 9 1306 257 283 162 21 chr12 94580626 94581008 -26676522 + L1MA5 LINE L1 5865 6300 0 1 1306 412 309 15 53 chr12 94582024 94582157 -26675373 + B1F SINE Alu 9 136 -13 1 1306 237 65 0 0 chr12 94582190 94582221 -26675309 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1306 501 17 0 0 chr12 94582282 94582340 -26675190 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1306 387 0 0 0 chr12 94582340 94582382 -26675148 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1306 1784 213 41 9 chr12 94582522 94582963 -26674567 - Lx3C LINE L1 -2 6974 6520 1 1306 1702 214 43 65 chr12 94583021 94583510 -26674020 + RMER1B Other Other 589 1066 0 1 1306 31 44 0 0 chr12 94583973 94584018 -26673512 + AT_rich Low_complexity Low_complexity 1 45 0 1 1306 202 194 0 0 chr12 94584531 94584567 -26672963 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1306 327 284 27 0 chr12 94584964 94585038 -26672492 + ID4 SINE ID 8 83 0 1 1306 1960 164 25 3 chr12 94585149 94585503 -26672027 + Lx4A LINE L1 6697 7058 0 1 1306 242 56 28 0 chr12 94585532 94585568 -26671962 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1306 360 164 0 0 chr12 94585787 94585848 -26671682 - HAL1-3A_ME LINE L1 -823 2035 1975 1 1306 462 18 0 0 chr12 94585884 94585939 -26671591 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1306 1296 49 82 0 chr12 94585947 94586131 -26671399 - L1_Mus2 LINE L1 0 6566 6368 1 1306 1150 317 94 48 chr12 94586134 94586455 -26671075 + Lx9 LINE L1 6722 7051 -593 1 1306 1006 119 14 0 chr12 94586455 94586598 -26670932 + B1_Mus2 SINE Alu 1 145 -2 1 1306 1071 24 0 0 chr12 94586598 94586724 -26670806 + (GA)n Simple_repeat Simple_repeat 2 127 0 1 1306 1150 317 94 48 chr12 94586724 94587137 -26670393 + Lx9 LINE L1 7052 7490 -154 1 1306 2065 130 3 69 chr12 94587224 94587572 -26669958 - Lx3A LINE L1 -93 6888 6564 1 1306 21 0 0 0 chr12 94588098 94588119 -26669411 + AT_rich Low_complexity Low_complexity 1 21 0 1 1306 1694 243 128 18 chr12 94588129 94588623 -26668907 - Lx5 LINE L1 -3 7047 6500 1 1306 509 189 0 31 chr12 94588627 94588725 -26668805 - Lx5 LINE L1 -736 6314 6220 1 1306 5471 60 1 7 chr12 94588725 94589429 -26668101 + L1Md_F2 LINE L1 5878 6577 -5 1 1306 2309 32 11 0 chr12 94589429 94589710 -26667820 - L1_Mm LINE L1 -905 4978 4695 1 1306 1088 213 48 41 chr12 94589743 94590057 -26667473 - Lx5 LINE L1 -822 6228 5913 1 1306 498 122 0 0 chr12 94590058 94590156 -26667374 + (TC)n Simple_repeat Simple_repeat 2 99 0 1 1306 288 0 0 0 chr12 94590157 94590189 -26667341 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1306 969 49 0 0 chr12 94590226 94590349 -26667181 - B1_Mus1 SINE Alu 0 148 26 1 1306 4807 155 3 54 chr12 94590488 94591002 -26666528 - Lx4A LINE L1 -569 6489 6014 1 1306 1067 47 67 0 chr12 94591002 94591151 -26666379 - L1Md_F3 LINE L1 -15 6569 6411 1 1306 4807 153 2 68 chr12 94591151 94591804 -26665726 - Lx4A LINE L1 -1045 6013 5395 1 1306 3049 165 18 13 chr12 94591804 94592349 -26665181 + Lx4A LINE L1 6506 7053 -5 1 1306 216 135 0 0 chr12 94592349 94592386 -26665144 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1 1306 1004 321 47 16 chr12 94593269 94593661 -26663869 - MTD LTR MaLR -14 405 8 1 1306 263 285 69 49 chr12 94594789 94594933 -26662597 - L1MA7 LINE L1 -330 5961 5815 1 1306 565 322 45 27 chr12 94595148 94595483 -26662047 - L1M3c LINE L1 -4978 1163 823 1 1306 713 326 39 39 chr12 94595723 94596004 -26661526 + B4A SINE B4 12 292 0 1 1306 22 56 0 0 chr12 94596053 94596089 -26661441 + AT_rich Low_complexity Low_complexity 1 36 0 1 1306 762 43 0 0 chr12 94596214 94596308 -26661222 + (GAAA)n Simple_repeat Simple_repeat 4 97 0 1 1306 250 278 42 62 chr12 94596987 94597083 -26660447 - MLT1B LTR MaLR 0 390 297 1 1306 25 75 0 0 chr12 94597676 94597729 -26659801 + AT_rich Low_complexity Low_complexity 1 53 0 1 1306 375 157 0 0 chr12 94597844 94597914 -26659616 + GA-rich Low_complexity Low_complexity 1 70 0 1 1306 2891 43 0 0 chr12 94597979 94598329 -26659201 + L1Md_F2 LINE L1 5237 5586 -297 1 1306 8156 43 0 7 chr12 94598329 94599331 -26658199 + L1Md_F2 LINE L1 5587 6581 -1 1 1306 625 167 79 50 chr12 94599456 94599595 -26657935 + B2_Mm2 SINE B2 47 189 -6 1 1306 23 68 0 0 chr12 94599712 94599756 -26657774 + AT_rich Low_complexity Low_complexity 1 44 0 1 1306 341 299 260 34 chr12 94600368 94600715 -26656815 + MLT1B LTR MaLR 14 459 -8 1 1306 250 232 40 0 chr12 94600948 94601047 -26656483 + GA-rich Low_complexity Low_complexity 3 105 0 1 1306 274 358 18 44 chr12 94601750 94601864 -26655666 - ORR1E LTR MaLR -185 174 64 1 1306 687 254 79 7 chr12 94602510 94602787 -26654743 - Lx9 LINE L1 -122 7522 7226 1 1306 5061 88 4 0 chr12 94602818 94603501 -26654029 + L1_Mus2 LINE L1 5880 6565 -1 1 1306 676 315 9 0 chr12 94603708 94603927 -26653603 + ID_B1 SINE B4 4 224 0 1 1306 251 122 20 0 chr12 94604174 94604223 -26653307 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1306 408 157 86 9 chr12 94604632 94604748 -26652782 - Lx9 LINE L1 -2 7642 7518 1 1306 318 26 0 0 chr12 94604749 94604788 -26652742 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1306 21 36 0 0 chr12 94605120 94605148 -26652382 + AT_rich Low_complexity Low_complexity 1 28 0 1 1306 6022 42 0 3 chr12 94605422 94606157 -26651373 - L1Md_F2 LINE L1 -10 6572 5840 1 1306 24 0 0 0 chr12 94606215 94606239 -26651291 + AT_rich Low_complexity Low_complexity 1 24 0 1 1306 258 200 141 0 chr12 94606738 94606823 -26650707 + Lx9 LINE L1 7547 7643 -1 1 1306 440 314 43 31 chr12 94606881 94607042 -26650488 + MLT1A0 LTR MaLR 156 318 -47 1 1306 513 115 0 0 chr12 94607838 94607916 -26649614 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1306 22 0 0 0 chr12 94608143 94608165 -26649365 + AT_rich Low_complexity Low_complexity 1 22 0 1 1306 226 182 45 15 chr12 94608730 94608797 -26648733 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1306 1467 301 70 39 chr12 94609402 94610075 -26647455 + Lx6 LINE L1 6456 7322 -138 1 1306 1943 68 0 0 chr12 94610075 94610323 -26647207 - L1_Mus2 LINE L1 -1 6565 6318 1 1306 1467 286 56 50 chr12 94610323 94610427 -26647103 + Lx6 LINE L1 7323 7433 -27 1 1306 478 384 31 21 chr12 94610750 94611217 -26646313 - MLT1F1 LTR MaLR -59 510 8 1 1306 493 300 85 55 chr12 94612318 94612519 -26645011 - MTEa LTR MaLR -160 219 13 1 1306 563 382 26 35 chr12 94613342 94613681 -26643849 + MER54A LTR ERVL 1 336 -565 1 1306 184 352 26 44 chr12 94613872 94613985 -26643545 + MIR SINE MIR 54 164 -98 1 1306 1498 145 14 92 chr12 94614481 94614830 -26642700 - RLTRETN_Mm LTR ERVK 0 322 1 1 1306 230 379 0 10 chr12 94615030 94615126 -26642404 + Lx7 LINE L1 6617 6711 -985 1 1306 427 309 112 138 chr12 94615396 94615772 -26641758 - RMER20B LTR ERVK -28 599 234 1 1306 474 33 0 0 chr12 94615906 94615966 -26641564 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 1 1306 1025 82 0 0 chr12 94615966 94616101 -26641429 - B1_Mus1 SINE Alu -10 138 4 1 1306 484 345 137 14 chr12 94616208 94616493 -26641037 + Lx7 LINE L1 6984 7303 -393 1 1306 575 75 11 0 chr12 94616681 94616775 -26640755 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 1 1306 23 33 0 0 chr12 94616978 94617008 -26640522 + AT_rich Low_complexity Low_complexity 1 30 0 1 1306 438 316 56 129 chr12 94617552 94617678 -26639852 + Lx7 LINE L1 7114 7215 -481 1 1306 279 0 0 0 chr12 94617678 94617709 -26639821 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1306 438 316 56 129 chr12 94617709 94618211 -26639319 + Lx7 LINE L1 7216 7696 0 1 1306 29 90 0 0 chr12 94618235 94618313 -26639217 + AT_rich Low_complexity Low_complexity 1 78 0 1 1306 331 336 87 70 chr12 94618908 94619138 -26638392 - MLT1D LTR MaLR 0 505 272 1 1306 426 20 0 0 chr12 94620015 94620066 -26637464 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1306 286 277 110 34 chr12 94620453 94620662 -26636868 + Lx8 LINE L1 5729 5953 -1520 1 1306 1582 250 25 80 chr12 94621366 94621918 -26635612 - Lx6 LINE L1 -431 7029 6508 1 1306 2043 219 3 12 chr12 94621926 94622442 -26635088 + Lx7 LINE L1 5462 5974 -1722 1 1306 1083 198 9 0 chr12 94622442 94622659 -26634871 + URR1A DNA MER1_type 5 223 -3 1 1306 1809 225 5 32 chr12 94622659 94622700 -26634830 + Lx7 LINE L1 5975 6011 -1685 1 1306 342 0 0 0 chr12 94622707 94622745 -26634785 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1306 1210 278 60 8 chr12 94622755 94623125 -26634405 + Lx6 LINE L1 6121 6509 -951 1 1306 4329 119 53 22 chr12 94623772 94624511 -26633019 + RLTR22_Mur LTR ERVK 3 764 -1084 1 1306 3803 130 56 0 chr12 94624517 94625124 -26632406 - Lx3B LINE L1 -221 6752 6112 1 1306 207 0 0 0 chr12 94625169 94625192 -26632338 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1306 663 78 0 0 chr12 94625442 94625532 -26631998 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 1306 21 0 0 0 chr12 94626668 94626689 -26630841 + AT_rich Low_complexity Low_complexity 1 21 0 1 1306 1213 41 0 0 chr12 94627160 94627307 -26630223 + B1_Mus2 SINE Alu 1 147 0 1 1306 21 0 0 0 chr12 94627794 94627815 -26629715 + AT_rich Low_complexity Low_complexity 1 21 0 1 1306 721 295 9 55 chr12 94628134 94628353 -26629177 - ID_B1 SINE B4 -1 223 15 1 1306 186 191 0 0 chr12 94628436 94628483 -26629047 + GA-rich Low_complexity Low_complexity 2 48 0 1 1306 226 342 84 13 chr12 94628988 94629142 -26628388 + MIR3 SINE MIR 10 174 -34 1 1306 34 42 0 0 chr12 94629266 94629314 -26628216 + AT_rich Low_complexity Low_complexity 1 48 0 1 1306 395 52 0 17 chr12 94629424 94629483 -26628047 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1306 621 27 0 0 chr12 94630087 94630162 -26627368 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1306 300 77 15 30 chr12 94630164 94630231 -26627299 + (TTTTTG)n Simple_repeat Simple_repeat 2 67 0 1 1306 1032 88 0 33 chr12 94630235 94630387 -26627143 - B1_Mm SINE Alu 0 147 1 2 1306 3248 64 0 0 chr12 94630551 94630972 -26626558 - L1_Mm LINE L1 -1142 4741 4321 2 1306 30 27 0 0 chr12 94631042 94631079 -26626451 + AT_rich Low_complexity Low_complexity 1 37 0 2 1306 374 20 0 0 chr12 94631131 94631182 -26626348 - L1Md_T LINE L1 0 6582 6532 2 1306 781 20 0 0 chr12 94631188 94631289 -26626241 + L1Md_T LINE L1 6482 6582 0 2 1306 1449 47 0 4 chr12 94631292 94631489 -26626041 + L1Md_F3 LINE L1 6277 6466 -116 2 1306 183 296 120 20 chr12 94631911 94632011 -26625519 + MIR SINE MIR 40 149 -113 2 1306 660 231 51 70 chr12 94632019 94632233 -26625297 - Lx6 LINE L1 -68 7392 7183 2 1306 600 62 0 0 chr12 94632297 94632378 -26625152 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 1306 432 0 0 0 chr12 94632381 94632429 -26625101 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1306 234 0 0 0 chr12 94632429 94632454 -26625076 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1306 4273 196 51 21 chr12 94632454 94633500 -26624030 - L1_Mur3 LINE L1 -28 5852 4776 2 163 1447 222 127 8 chr12 94633482 94634195 -26623335 - L1_Mur3 LINE L1 -4260 1620 836 2 1307 660 309 20 56 chr12 94634214 94634516 -26623014 - L1_Mur3 LINE L1 -7190 538 248 2 1307 2477 152 52 0 chr12 94634564 94634991 -26622539 + Lx3B LINE L1 6501 6949 -24 2 1307 224 77 0 25 chr12 94634995 94635035 -26622495 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1307 779 101 8 0 chr12 94635683 94635802 -26621728 + (TTCCC)n Simple_repeat Simple_repeat 2 121 0 2 1307 425 149 28 9 chr12 94635810 94635918 -26621612 + Lx3C LINE L1 6864 6973 -3 2 1307 758 67 9 0 chr12 94635920 94636025 -26621505 + (GAAA)n Simple_repeat Simple_repeat 1 106 0 2 1307 391 113 28 0 chr12 94636025 94636096 -26621434 + (GGGAGA)n Simple_repeat Simple_repeat 2 74 0 2 1307 3852 185 102 19 chr12 94636096 94637072 -26620458 - Lx5 LINE L1 -546 6504 5469 2 1307 304 286 62 112 chr12 94637179 94637419 -26620111 - Lx5 LINE L1 -2072 4074 3847 2 1307 318 106 0 0 chr12 94638208 94638255 -26619275 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 1307 493 349 24 6 chr12 94638593 94638760 -26618770 - B3 SINE B2 -10 206 37 2 1307 1312 253 47 52 chr12 94639148 94639511 -26618019 + MTD LTR MaLR 5 365 -54 2 1307 634 274 36 46 chr12 94639511 94639706 -26617824 + ORR1C2 LTR MaLR 3 195 -189 2 1307 839 128 24 0 chr12 94639743 94639907 -26617623 + CT-rich Low_complexity Low_complexity 1 168 0 2 1307 636 210 110 25 chr12 94639921 94640096 -26617434 + ORR1C2 LTR MaLR 179 368 -26 2 1307 8565 176 20 11 chr12 94640108 94642751 -26614779 - Lx3C LINE L1 -1 6975 4305 2 1307 248 164 71 18 chr12 94642785 94642841 -26614689 + ORR1C2 LTR MaLR 359 417 -2 2 1307 22 56 0 0 chr12 94643002 94643038 -26614492 + AT_rich Low_complexity Low_complexity 1 36 0 2 1307 21 36 0 0 chr12 94643283 94643311 -26614219 + AT_rich Low_complexity Low_complexity 1 28 0 2 1307 8174 128 19 8 chr12 94644202 94645480 -26612050 + Lx3A LINE L1 5686 6977 -4 2 1307 22 0 0 0 chr12 94645481 94645503 -26612027 + AT_rich Low_complexity Low_complexity 1 22 0 2 1307 1118 261 62 17 chr12 94645769 94646127 -26611403 - ORR1D1 LTR MaLR 0 374 1 2 1307 290 200 41 41 chr12 94647427 94647500 -26610030 - MER58B DNA MER1_type -1 340 268 2 1307 287 275 75 0 chr12 94648003 94648083 -26609447 - LFSINE_Vert SINE SINE -1 458 373 2 1307 300 27 0 0 chr12 94648210 94648247 -26609283 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1307 398 120 13 0 chr12 94648319 94648394 -26609136 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1307 198 0 0 0 chr12 94648450 94648472 -26609058 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1307 323 356 26 9 chr12 94648472 94648588 -26608942 - RSINE1 SINE B4 -18 147 30 2 1307 1773 197 60 31 chr12 94648588 94648970 -26608560 - ORR1B1 LTR MaLR 0 394 2 2 1307 336 127 0 0 chr12 94649050 94649105 -26608425 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1307 762 73 82 0 chr12 94649526 94649636 -26607894 - L1_Mur1 LINE L1 -1765 4121 4003 2 1307 3149 129 52 4 chr12 94649625 94650169 -26607361 - L1_Mur1 LINE L1 -2851 3035 2466 2 1307 11284 109 12 9 chr12 94650165 94650758 -26606772 + Lx3A LINE L1 4130 4735 -1151 2 1307 216 67 0 0 chr12 94650758 94650788 -26606742 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1307 11284 127 26 6 chr12 94650788 94652907 -26604623 + Lx3A LINE L1 4736 6895 -86 2 1307 724 134 27 0 chr12 94652906 94653018 -26604512 - Lx3A LINE L1 -592 6389 6275 2 1307 358 169 0 0 chr12 94653025 94653096 -26604434 + Lx3A LINE L1 6904 6974 -7 2 1307 26 0 0 0 chr12 94653560 94653586 -26603944 + AT_rich Low_complexity Low_complexity 1 26 0 2 1307 575 117 0 10 chr12 94653591 94653695 -26603835 + (GA)n Simple_repeat Simple_repeat 1 103 0 2 1307 415 306 45 28 chr12 94653719 94653897 -26603633 - B3A SINE B2 -16 182 2 2 1307 780 50 0 0 chr12 94653992 94654093 -26603437 + (GA)n Simple_repeat Simple_repeat 2 102 0 2 1307 5000 206 27 77 chr12 94655403 94656112 -26601418 + Lx4A LINE L1 4655 5379 -507 2 1307 1111 116 0 0 chr12 94656112 94656259 -26601271 + B1_Mus2 SINE Alu 1 147 0 2 1307 7083 194 55 19 chr12 94656259 94657953 -26599577 + Lx4A LINE L1 5380 7056 -2 2 1307 23 54 0 0 chr12 94657954 94657991 -26599539 + AT_rich Low_complexity Low_complexity 1 37 0 2 1307 4167 163 8 3 chr12 94658433 94659146 -26598384 - Lx2B LINE L1 -1 6999 6283 2 1307 378 117 54 0 chr12 94659228 94659339 -26598191 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 1307 600 14 0 0 chr12 94660030 94660099 -26597431 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 2 1307 376 208 262 16 chr12 94662830 94662952 -26594578 + Lx9 LINE L1 7078 7229 -415 2 1307 399 41 0 0 chr12 94663131 94663180 -26594350 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1307 198 167 0 0 chr12 94663323 94663359 -26594171 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1307 802 315 97 42 chr12 94663421 94664072 -26593458 - Lx7 LINE L1 -625 7071 6385 2 1307 269 306 48 11 chr12 94664080 94664268 -26593262 + Lx7 LINE L1 5151 5345 -535 2 1307 468 313 36 31 chr12 94664334 94664558 -26592972 + Lx7 LINE L1 6142 6366 -1330 2 1307 448 403 61 50 chr12 94664992 94665269 -26592261 - B4A SINE B4 -11 281 2 2 1307 1716 105 19 4 chr12 94665821 94666089 -26591441 + L1_Mus3 LINE L1 6360 6631 -7 2 1307 21 36 0 0 chr12 94666091 94666119 -26591411 + AT_rich Low_complexity Low_complexity 1 28 0 2 1307 242 245 0 36 chr12 94667366 94667421 -26590109 + ID2 SINE ID 31 83 0 2 1307 189 0 0 0 chr12 94668220 94668241 -26589289 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1307 489 34 0 0 chr12 94669693 94669752 -26587778 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1307 577 346 67 46 chr12 94672376 94672658 -26584872 + B4 SINE B4 1 288 -4 2 1307 285 75 0 0 chr12 94674278 94674318 -26583212 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1307 190 51 0 71 chr12 94674379 94674421 -26583109 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 2 1307 761 0 11 0 chr12 94674583 94674672 -26582858 + (TTTC)n Simple_repeat Simple_repeat 4 93 0 2 1307 1144 75 0 0 chr12 94674673 94674820 -26582710 - B1_Mus2 SINE Alu 0 147 1 2 1307 277 261 14 14 chr12 94674843 94674913 -26582617 - MTC LTR MaLR -58 363 294 2 1307 2915 173 11 8 chr12 94674951 94675481 -26582049 - Lx3A LINE L1 -7 6974 6443 2 1307 414 0 0 0 chr12 94676612 94676658 -26580872 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 1307 434 333 87 35 chr12 94677947 94678292 -26579238 + L2 LINE L2 1990 2352 -1067 2 1307 4461 105 22 10 chr12 94678299 94678982 -26578548 - Lx3_Mus LINE L1 -3 7006 6316 2 1307 3357 122 60 2 chr12 94678984 94679533 -26577997 + Lx3_Mus LINE L1 5732 6312 -697 2 1307 212 279 65 37 chr12 94679536 94679644 -26577886 + L2 LINE L2 2363 2473 -946 2 1307 296 377 135 39 chr12 94681299 94681936 -26575594 + MLT-int LTR MaLR 158 855 -880 2 1307 3182 30 2 20 chr12 94683428 94683496 -26574034 + MTA_Mm LTR MaLR 1 66 -330 2 1307 3158 60 3 0 chr12 94683496 94683880 -26573650 + IAPEY_LTR LTR ERVK 1 385 0 2 1307 3182 30 2 20 chr12 94683880 94684214 -26573316 + MTA_Mm LTR MaLR 67 396 0 2 1307 381 93 0 0 chr12 94684237 94684291 -26573239 + (A)n Simple_repeat Simple_repeat 1 54 0 2 1307 1146 181 92 82 chr12 94684293 94684685 -26572845 - RMER17C LTR ERVK -14 396 1 2 1307 510 17 0 0 chr12 94684688 94684747 -26572783 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1307 580 152 11 38 chr12 94685096 94685281 -26572249 + CT-rich Low_complexity Low_complexity 1 180 0 2 1307 1013 142 12 23 chr12 94685662 94685835 -26571695 + B2_Mm1t SINE B2 4 174 -19 2 1307 277 182 0 35 chr12 94685875 94685932 -26571598 + B2_Mm2 SINE B2 47 101 -94 2 1307 274 365 61 0 chr12 94686164 94686279 -26571251 - RSINE1 SINE B4 -24 141 20 2 1307 24 53 0 0 chr12 94686295 94686333 -26571197 + AT_rich Low_complexity Low_complexity 1 38 0 2 1307 243 373 68 77 chr12 94687101 94687452 -26570078 + ORR1E LTR MaLR 1 348 -11 2 1307 765 323 37 24 chr12 94689610 94689905 -26567625 - MTE2b LTR MaLR -80 299 1 2 1307 237 325 0 25 chr12 94690099 94690178 -26567352 - Charlie6 DNA MER1_type -1866 1634 1558 2 1307 234 0 0 0 chr12 94690289 94690315 -26567215 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1307 2064 201 89 27 chr12 94690610 94691095 -26566435 - Lx5 LINE L1 -595 6455 5941 2 1307 414 0 0 0 chr12 94692183 94692229 -26565301 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1307 23 0 0 0 chr12 94693095 94693118 -26564412 + AT_rich Low_complexity Low_complexity 1 23 0 2 1307 333 342 67 77 chr12 94693152 94693628 -26563902 - L1MC1 LINE L1 0 6333 5860 2 1307 1767 103 14 17 chr12 94693628 94693915 -26563615 + L1_Mus3 LINE L1 6348 6633 -5 2 1307 333 342 67 77 chr12 94693915 94693932 -26563598 - L1MC1 LINE L1 -474 5859 5845 2 1307 199 0 65 0 chr12 94693935 94693966 -26563564 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1307 318 320 60 22 chr12 94694159 94694344 -26563186 - L1MC1 LINE L1 -714 5619 5428 2 1307 493 308 284 20 chr12 94694506 94694802 -26562728 - MTEb LTR MaLR -2 377 4 2 1307 1935 332 91 45 chr12 94694806 94695799 -26561731 - MTEb-int LTR MaLR -1 1579 542 2 1307 288 320 44 27 chr12 94695833 94696058 -26561472 - L1MC1 LINE L1 -920 5226 4998 2 1307 40 21 0 0 chr12 94696068 94696115 -26561415 + AT_rich Low_complexity Low_complexity 1 47 0 2 1307 348 184 0 0 chr12 94696210 94696308 -26561222 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 1307 21 57 0 0 chr12 94696432 94696467 -26561063 + AT_rich Low_complexity Low_complexity 1 35 0 2 1307 29 0 0 0 chr12 94696774 94696803 -26560727 + AT_rich Low_complexity Low_complexity 1 29 0 2 1307 22 35 0 0 chr12 94696842 94696871 -26560659 + AT_rich Low_complexity Low_complexity 1 29 0 2 1307 185 83 28 0 chr12 94697257 94697293 -26560237 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2 1307 519 17 0 0 chr12 94698568 94698628 -26558902 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 2 1307 811 255 73 0 chr12 94699905 94700191 -26557339 - Lx9 LINE L1 -9 7635 7329 3 1307 327 343 182 10 chr12 94700531 94700734 -26556796 - RMER15 LTR ERVL 0 575 338 3 1307 207 0 0 0 chr12 94701672 94701695 -26555835 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1307 3876 102 14 21 chr12 94701695 94702265 -26555265 - Lx LINE L1 -9 6645 6080 3 1307 267 54 0 0 chr12 94702535 94702572 -26554958 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1307 781 304 125 14 chr12 94703919 94704206 -26553324 + MTC LTR MaLR 1 319 -102 3 1307 429 20 0 0 chr12 94705140 94705190 -26552340 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 1307 466 146 10 10 chr12 94705252 94705339 -26552191 + CT-rich Low_complexity Low_complexity 21 106 0 3 1307 1250 83 0 11 chr12 94705339 94705521 -26552009 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1307 466 146 10 10 chr12 94705521 94705537 -26551993 + polypyrimidine Low_complexity Low_complexity 4 20 0 3 1307 816 251 25 5 chr12 94705897 94706093 -26551437 - Lx9 LINE L1 -393 7251 7052 3 1307 295 270 16 8 chr12 94706142 94706269 -26551261 + Lx9 LINE L1 7517 7644 0 3 1307 237 312 15 15 chr12 94707535 94707665 -26549865 + (TA)n Simple_repeat Simple_repeat 2 131 0 3 1307 3201 144 12 27 chr12 94707716 94708316 -26549214 - RLTR19-int LTR ERVK -2161 3976 3386 3 1307 2512 49 40 0 chr12 94708322 94708649 -26548881 - L1Md_F2 LINE L1 -1 6581 6242 3 1307 507 17 0 0 chr12 94709098 94709158 -26548372 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1307 24 0 0 0 chr12 94709863 94709887 -26547643 + AT_rich Low_complexity Low_complexity 1 24 0 3 1307 27 29 0 0 chr12 94710137 94710171 -26547359 + AT_rich Low_complexity Low_complexity 1 34 0 3 1307 1702 137 109 0 chr12 94711130 94711414 -26546116 + Lx3B LINE L1 6659 6973 0 3 1307 29 60 0 0 chr12 94712746 94712796 -26544734 + AT_rich Low_complexity Low_complexity 1 50 0 3 1307 23 0 0 0 chr12 94712896 94712919 -26544611 + AT_rich Low_complexity Low_complexity 1 23 0 3 1307 661 338 19 19 chr12 94712931 94713142 -26544388 + B3 SINE B2 1 211 -5 3 1307 255 31 0 0 chr12 94713307 94713339 -26544191 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1307 1971 134 67 28 chr12 94713483 94713843 -26543687 - Lx LINE L1 -6 6648 6275 3 1307 209 220 0 20 chr12 94714748 94714799 -26542731 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1307 486 321 41 35 chr12 94715258 94715455 -26542075 - ID_B1 SINE B4 -9 215 18 3 1307 285 29 0 0 chr12 94718012 94718046 -26539484 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1307 8165 45 1 2 chr12 94718060 94719572 -26537958 - L1Md_F2 LINE L1 0 6582 5074 3 1307 313 116 0 0 chr12 94719569 94719612 -26537918 + L1Md_F2 LINE L1 5031 5073 -810 3 1307 533 296 105 5 chr12 94719612 94719802 -26537728 - B3 SINE B2 -6 210 2 3 1307 394 285 78 44 chr12 94720425 94720605 -26536925 + LTR50 LTR ERVL 9 194 -601 3 1307 219 164 16 32 chr12 94720823 94720886 -26536644 + T-rich Low_complexity Low_complexity 4 65 0 3 1307 23 0 0 0 chr12 94721286 94721309 -26536221 + AT_rich Low_complexity Low_complexity 1 23 0 3 1307 221 352 11 54 chr12 94721333 94721426 -26536104 - RSINE1 SINE B4 -36 129 41 3 1307 2506 160 0 5 chr12 94721438 94721853 -26535677 + Lx2B LINE L1 6588 7000 0 3 1307 420 55 0 0 chr12 94721932 94721987 -26535543 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1307 582 15 0 0 chr12 94722676 94722743 -26534787 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 1307 306 0 0 0 chr12 94722743 94722776 -26534754 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1307 399 411 5 55 chr12 94725465 94725666 -26531864 + B3A SINE B2 2 192 -6 3 1307 288 328 43 14 chr12 94725752 94725891 -26531639 + RSINE1 SINE B4 4 146 -19 3 1307 317 241 58 166 chr12 94725965 94726104 -26531426 + Lx9 LINE L1 7287 7410 -234 3 1307 441 0 0 0 chr12 94726162 94726211 -26531319 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1307 201 207 37 0 chr12 94726214 94726296 -26531234 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 1307 4407 44 22 2 chr12 94726304 94726852 -26530678 + L1_Mm LINE L1 5237 5795 -88 3 1307 27992 5 0 0 chr12 94726847 94730019 -26527511 + L1Md_A LINE L1 2415 5586 -297 3 1307 8977 5 0 0 chr12 94730019 94731015 -26526515 + L1Md_A LINE L1 5587 6582 0 3 1307 207 0 0 0 chr12 94731030 94731053 -26526477 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1307 225 0 0 0 chr12 94731168 94731193 -26526337 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1307 6349 48 10 2 chr12 94731193 94731987 -26525543 + L1Md_F2 LINE L1 5783 6582 0 3 1307 220 87 85 21 chr12 94732464 94732511 -26525019 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 3 1307 319 129 29 0 chr12 94732534 94732572 -26524958 + polypyrimidine Low_complexity Low_complexity 34 73 0 3 1307 1359 67 0 0 chr12 94732572 94732751 -26524779 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 3 1307 319 129 29 0 chr12 94732751 94732782 -26524748 + polypyrimidine Low_complexity Low_complexity 3 33 0 3 1307 4622 112 94 4 chr12 94732934 94733659 -26523871 - Lx3_Mus LINE L1 -11 6998 6209 3 1307 470 368 21 25 chr12 94733659 94733999 -26523531 - Lx8 LINE L1 -605 7091 6764 3 1307 686 228 14 0 chr12 94734034 94734179 -26523351 + B1_Mur4 SINE Alu 4 150 0 3 1307 486 117 0 0 chr12 94734181 94734247 -26523283 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 3 1307 1272 89 0 0 chr12 94734247 94734427 -26523103 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1307 486 117 0 0 chr12 94734427 94734437 -26523093 + (GGAA)n Simple_repeat Simple_repeat 1 10 0 3 1307 472 162 204 18 chr12 94734442 94734555 -26522975 - URR1B DNA MER1_type -91 134 1 3 1307 741 279 76 22 chr12 94734639 94734863 -26522667 + Kanga1c DNA Tc2 40 275 -454 3 1307 967 319 73 4 chr12 94737081 94737501 -26520029 + RMER1C Other Other 194 746 -596 3 1307 1711 332 35 5 chr12 94737501 94738097 -26519433 + RMER1C Other Other 385 998 -344 3 1307 379 206 0 10 chr12 94738146 94738244 -26519286 + RMER1C Other Other 1245 1341 -1 3 1307 1087 341 82 25 chr12 94738285 94739001 -26518529 + Lx8 LINE L1 6712 7468 -5 3 1307 323 304 48 13 chr12 94739199 94739426 -26518104 - L1MC LINE L1 -917 5229 4995 3 1307 465 19 0 0 chr12 94739428 94739482 -26518048 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1307 580 217 16 13 chr12 94739482 94739793 -26517737 + (TA)n Simple_repeat Simple_repeat 1 312 0 3 1307 375 371 34 65 chr12 94739815 94740031 -26517499 - L1MC LINE L1 -1178 4968 4772 3 1307 495 316 21 0 chr12 94740031 94740224 -26517306 - B3A SINE B2 0 198 2 3 1307 375 371 34 65 chr12 94740224 94740359 -26517171 - L1MC LINE L1 -1375 4771 4628 3 1307 369 267 73 112 chr12 94740546 94740970 -26516560 - RMER20A LTR ERVK -23 604 213 3 1307 369 331 98 33 chr12 94741212 94741518 -26516012 - L1M4 LINE L1 -1661 4485 4160 3 1307 757 281 58 88 chr12 94741754 94742387 -26515143 - L1MC LINE L1 -3173 2973 2360 3 1307 270 0 0 0 chr12 94742611 94742641 -26514889 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1307 257 361 31 30 chr12 94744519 94744694 -26512836 - MIRb SINE MIR -45 217 41 3 1307 509 219 69 7 chr12 94746231 94746371 -26511159 + RMER6B LTR ERVK 4 148 -608 3 1307 5389 90 52 5 chr12 94746382 94747196 -26510334 - L1_Mus3 LINE L1 -4 6634 5783 3 1307 5609 73 5 8 chr12 94747194 94747954 -26509576 - L1Md_F2 LINE L1 0 6582 5825 3 1307 3007 12 0 0 chr12 94747954 94748291 -26509239 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1307 56034 22 7 6 chr12 94748291 94754760 -26502770 + IAPEz-int LTR ERVK 8 6481 0 3 1307 2977 18 0 0 chr12 94754760 94755097 -26502433 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1307 11207 125 28 9 chr12 94755097 94755624 -26501906 - L1_Mm LINE L1 -53 5830 5296 3 1307 2882 118 0 77 chr12 94755624 94756120 -26501410 - L1_Mus2 LINE L1 -2 6564 6107 3 1307 11207 125 28 9 chr12 94756120 94757396 -26500134 - L1_Mm LINE L1 -588 5295 3994 3 1307 994 197 217 43 chr12 94757424 94757700 -26499830 + RMER6B LTR ERVK 138 461 0 3 1307 235 244 0 0 chr12 94758244 94758289 -26499241 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 3 1307 22 0 0 0 chr12 94758313 94758335 -26499195 + AT_rich Low_complexity Low_complexity 1 22 0 3 1307 2325 124 34 58 chr12 94759161 94759606 -26497924 + Lx LINE L1 6218 6651 -3 3 1307 184 59 29 29 chr12 94761377 94761412 -26496118 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 1307 1672 189 6 9 chr12 94761461 94761781 -26495749 + Lx2A1 LINE L1 6690 7008 0 3 1307 28 0 0 0 chr12 94761928 94761956 -26495574 + AT_rich Low_complexity Low_complexity 1 28 0 3 1307 231 309 54 18 chr12 94762105 94762217 -26495313 + L1MEa LINE L1 46 161 -5909 3 1307 22 56 0 0 chr12 94762450 94762486 -26495044 + AT_rich Low_complexity Low_complexity 1 36 0 3 1307 189 171 0 0 chr12 94762597 94762632 -26494898 + (TATG)n Simple_repeat Simple_repeat 4 38 0 3 1307 1453 203 258 39 chr12 94763423 94763880 -26493650 + RMER19B LTR ERVK 346 902 0 3 1307 231 381 0 0 chr12 94764121 94764205 -26493325 + MTEa LTR MaLR 18 101 -278 3 1307 1034 205 98 87 chr12 94764281 94764640 -26492890 - Lx4A LINE L1 0 7058 6655 3 1307 632 305 70 37 chr12 94764641 94764883 -26492647 + MTEa LTR MaLR 127 376 -3 3 1308 339 355 32 69 chr12 94765390 94765608 -26491922 - MER63A DNA AcHobo 0 210 1 3 1308 5490 68 4 1 chr12 94766474 94767215 -26490315 + L1_Mm LINE L1 2908 3650 -2233 3 1308 1995 48 0 0 chr12 94767493 94767743 -26489787 + L1_Mm LINE L1 3657 3906 -1977 3 1308 203 170 0 21 chr12 94767794 94767842 -26489688 + (CCA)n Simple_repeat Simple_repeat 3 49 0 3 1308 939 229 161 15 chr12 94767882 94768206 -26489324 - ORR1D1 LTR MaLR 0 374 4 3 1308 264 309 128 23 chr12 94768579 94768837 -26488693 - L1M2 LINE L1 -409 5891 5607 3 1308 352 283 348 43 chr12 94769080 94769454 -26488076 - L1M2 LINE L1 -804 5339 4852 3 1308 234 0 0 0 chr12 94769529 94769555 -26487975 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 3 1308 384 103 0 0 chr12 94769556 94769614 -26487916 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 3 1308 550 308 24 27 chr12 94769653 94769950 -26487580 - L1M2 LINE L1 -1320 4823 4528 3 1308 581 249 174 32 chr12 94770147 94770549 -26486981 + L1M2 LINE L1 3171 3629 -2514 3 1308 514 295 145 0 chr12 94770888 94771054 -26486476 - B3 SINE B2 -13 203 14 3 1308 214 162 25 63 chr12 94771268 94771347 -26486183 + A-rich Low_complexity Low_complexity 1 76 0 3 1308 979 65 50 7 chr12 94771772 94771911 -26485619 - B1_Mm SINE Alu 0 147 3 3 1308 408 313 87 2 chr12 94772245 94772443 -26485087 + ORR1D1 LTR MaLR 3 210 -168 4 1308 224 79 0 50 chr12 94772447 94772487 -26485043 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 4 1308 459 35 0 0 chr12 94772504 94772561 -26484969 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1308 589 292 33 52 chr12 94772565 94772778 -26484752 + ORR1D1 LTR MaLR 166 374 0 4 1308 251 361 156 18 chr12 94772919 94773252 -26484278 - MLT2C1 LTR ERVL -9 388 10 4 1308 1228 116 5 16 chr12 94773744 94773937 -26483593 - B2_Mm2 SINE B2 -4 191 1 4 1308 277 330 11 11 chr12 94774560 94774652 -26482878 + B4A SINE B4 1 92 -200 4 1308 1651 142 12 61 chr12 94775826 94776171 -26481359 + L1_Mus4 LINE L1 6309 6636 0 4 1308 22 56 0 0 chr12 94776544 94776580 -26480950 + AT_rich Low_complexity Low_complexity 1 36 0 4 1308 211 146 0 24 chr12 94776936 94776978 -26480552 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1308 3262 39 3 0 chr12 94777018 94777402 -26480128 - IAPEY_LTR LTR ERVK 0 385 1 4 1308 20755 45 3 6 chr12 94777402 94780121 -26477409 - IAPEy-int LTR ERVK 0 7513 4804 4 1308 2582 138 12 21 chr12 94780121 94780800 -26476730 - IAPEy-int LTR ERVK -6455 1058 1 4 1308 3287 42 3 0 chr12 94780800 94781184 -26476346 - IAPEY_LTR LTR ERVK 0 385 1 4 1308 589 68 0 0 chr12 94781802 94781875 -26475655 + B1_Mm SINE Alu 24 96 -51 4 1308 222 37 0 0 chr12 94783989 94784016 -26473514 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1308 361 0 41 0 chr12 94785085 94785134 -26472396 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1308 22 0 0 0 chr12 94786794 94786816 -26470714 + AT_rich Low_complexity Low_complexity 1 22 0 4 1308 21 71 0 0 chr12 94786871 94786913 -26470617 + AT_rich Low_complexity Low_complexity 1 42 0 4 1308 252 0 0 0 chr12 94788397 94788425 -26469105 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1308 249 33 0 0 chr12 94788692 94788722 -26468808 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1308 1567 94 0 13 chr12 94789714 94789940 -26467590 + L1Md_F2 LINE L1 6360 6582 0 4 1308 24 53 0 0 chr12 94790185 94790223 -26467307 + AT_rich Low_complexity Low_complexity 1 38 0 4 1308 841 306 31 76 chr12 94790255 94790609 -26466921 - MTEb LTR MaLR -8 371 34 4 1308 579 112 0 0 chr12 94790650 94790757 -26466773 + (GA)n Simple_repeat Simple_repeat 1 107 0 4 1308 336 24 0 0 chr12 94791113 94791154 -26466376 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1308 381 330 17 0 chr12 94791159 94791274 -26466256 - RSINE1 SINE B4 0 165 49 4 1308 3283 94 11 2 chr12 94791604 94792061 -26465469 - L1_Mus1 LINE L1 0 6567 6107 4 1308 494 304 138 16 chr12 94792138 94792456 -26465074 + L1MC4a LINE L1 7462 7818 -64 4 1308 429 326 62 17 chr12 94794608 94794786 -26462744 + Lx8 LINE L1 6928 7113 -360 4 1308 386 271 0 0 chr12 94794791 94794898 -26462632 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 1308 5623 188 40 20 chr12 94795331 94797489 -26460041 - Lx4B LINE L1 -46 7012 4717 4 1308 307 127 0 16 chr12 94797575 94797639 -26459891 + L1Md_A LINE L1 632 694 -6030 4 1308 33670 32 2 46 chr12 94797637 94803067 -26454463 + L1Md_T LINE L1 398 5586 -297 4 1308 8343 41 0 0 chr12 94803067 94804063 -26453467 + L1Md_T LINE L1 5587 6582 0 4 1308 183 42 0 0 chr12 94804406 94804430 -26453100 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1308 4285 175 47 21 chr12 94804504 94804920 -26452610 - L1_Mur2 LINE L1 -1349 4528 4091 4 1308 2217 79 219 0 chr12 94804920 94805248 -26452282 - MTB LTR MaLR 0 400 1 4 1308 4285 175 47 21 chr12 94805248 94805450 -26452080 - L1_Mur2 LINE L1 -1787 4090 3883 4 1308 180 0 0 0 chr12 94805450 94805470 -26452060 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1308 1038 96 0 0 chr12 94805470 94805605 -26451925 - B1_Mus2 SINE Alu -12 135 1 4 1308 4285 175 47 21 chr12 94805605 94805967 -26451563 - L1_Mur2 LINE L1 -1995 3882 3522 4 1308 5045 176 108 34 chr12 94805967 94807019 -26450511 + Lx4B LINE L1 4502 5585 -292 4 1308 429 20 0 0 chr12 94807019 94807069 -26450461 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1308 5726 192 91 5 chr12 94807069 94808377 -26449153 + Lx4B LINE L1 5604 7023 -35 4 1308 320 190 12 48 chr12 94808797 94808880 -26448650 + HAL1-3A_ME LINE L1 1955 2034 -824 4 1308 252 137 0 0 chr12 94808880 94808931 -26448599 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1308 230 0 33 0 chr12 94808976 94809006 -26448524 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1308 32 26 0 0 chr12 94809466 94809505 -26448025 + AT_rich Low_complexity Low_complexity 1 39 0 4 1308 305 319 73 15 chr12 94809940 94810077 -26447453 + MLT2B4 LTR ERVL 20 164 -392 4 1308 2077 142 6 3 chr12 94810337 94810663 -26446867 - ORR1A2 LTR MaLR 0 327 1 4 1308 976 123 14 0 chr12 94810721 94810867 -26446663 + B1_Mus1 SINE Alu 1 148 0 4 1308 3441 132 61 2 chr12 94810910 94811352 -26446178 + Lx LINE L1 6059 6533 -121 4 1308 189 0 0 0 chr12 94811352 94811373 -26446157 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 4 1308 3441 132 61 2 chr12 94811373 94811490 -26446040 + Lx LINE L1 6534 6650 -4 4 1308 26 30 0 0 chr12 94811629 94811662 -26445868 + AT_rich Low_complexity Low_complexity 1 33 0 4 1308 345 47 0 0 chr12 94812148 94812191 -26445339 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1308 348 111 0 0 chr12 94812358 94812412 -26445118 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1308 613 354 55 18 chr12 94813261 94813718 -26443812 + Lx8 LINE L1 6656 7129 -344 4 1308 400 360 74 74 chr12 94814185 94814401 -26443129 + B3A SINE B2 1 216 0 4 1308 2312 129 3 21 chr12 94814480 94814853 -26442677 - Lx2A1 LINE L1 0 7008 6643 4 1308 268 336 63 0 chr12 94814870 94815013 -26442517 + ORR1E LTR MaLR 1 152 -207 4 1308 212 77 0 25 chr12 94815121 94815161 -26442369 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 4 1308 1521 19 0 0 chr12 94815426 94815691 -26441839 + (TTAGGG)n Simple_repeat Simple_repeat 1 265 0 4 1308 1032 301 65 49 chr12 94815860 94816289 -26441241 - LTR40c LTR ERVL -29 436 1 4 1308 4142 128 27 5 chr12 94816880 94817541 -26439989 - Lx3A LINE L1 0 6981 6306 4 1308 3852 121 20 14 chr12 94817558 94817667 -26439863 + Lx3A LINE L1 5593 5701 -1280 4 1308 207 0 0 0 chr12 94817667 94817690 -26439840 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1308 3852 121 20 14 chr12 94817690 94817894 -26439636 + Lx3A LINE L1 5702 5909 -1072 4 1308 195 42 0 0 chr12 94817894 94817918 -26439612 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 1308 3852 121 20 14 chr12 94817918 94818257 -26439273 + Lx3A LINE L1 5910 6249 -732 4 1308 1140 76 0 0 chr12 94818277 94818421 -26439109 - B1_Mm SINE Alu -2 145 2 4 1308 2460 293 39 30 chr12 94818919 94819207 -26438323 + L1_Mur3 LINE L1 61 360 -7352 4 1308 2347 79 3 0 chr12 94819207 94819524 -26438006 - L1_Mus2 LINE L1 0 6566 6249 4 1308 2460 293 39 30 chr12 94819524 94820199 -26437331 + L1_Mur3 LINE L1 361 1033 -6679 4 1308 282 394 45 50 chr12 94820869 94821067 -26436463 + MLT1A LTR MaLR 19 215 -159 4 1308 510 17 0 0 chr12 94822586 94822645 -26434885 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1308 483 18 0 0 chr12 94822770 94822826 -26434704 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1308 36258 30 0 1 chr12 94822863 94829336 -26428194 - L1Md_T LINE L1 0 6585 48 4 1308 637 238 6 58 chr12 94829832 94829988 -26427542 + B1_Mur4 SINE Alu 3 150 0 4 1308 809 47 9 0 chr12 94829994 94830100 -26427430 + (GA)n Simple_repeat Simple_repeat 2 108 0 4 1308 434 348 9 0 chr12 94830222 94830334 -26427196 + PB1D7 SINE Alu 1 113 -7 4 1308 22 94 0 0 chr12 94830444 94830508 -26427022 + AT_rich Low_complexity Low_complexity 1 64 0 4 1308 225 0 0 0 chr12 94830549 94830574 -26426956 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1308 360 0 0 0 chr12 94830885 94830925 -26426605 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1308 1047 96 0 0 chr12 94830929 94831065 -26426465 - B1_Mus1 SINE Alu -12 136 1 4 1308 536 271 87 73 chr12 94831140 94831359 -26426171 + RLTR23 LTR ERV1 209 430 0 4 1308 1624 205 35 22 chr12 94831360 94831729 -26425801 + RMER6-int LTR ERVK 2802 3175 -2 4 1308 2069 225 56 62 chr12 94831733 94832004 -26425526 + RMER6C LTR ERVK 3 286 -404 4 1308 3536 33 12 0 chr12 94832004 94832426 -26425104 + L1Md_F3 LINE L1 6144 6570 -14 4 1308 2069 225 56 62 chr12 94832426 94832846 -26424684 + RMER6C LTR ERVK 287 689 -1 4 1308 212 0 36 0 chr12 94833304 94833332 -26424198 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1308 7077 118 34 42 chr12 94833332 94834415 -26423115 - Lx3A LINE L1 -13 6968 5905 4 1308 342 0 0 0 chr12 94834415 94834453 -26423077 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1308 180 0 0 0 chr12 94834453 94834472 -26423058 + (CG)n Simple_repeat Simple_repeat 2 21 0 4 1308 7077 118 34 42 chr12 94834472 94834612 -26422918 - Lx3A LINE L1 -1077 5904 5755 4 1308 1266 94 0 6 chr12 94834637 94834818 -26422712 + B2_Mm2 SINE B2 13 192 -3 4 1308 3258 202 74 89 chr12 94835526 94836427 -26421103 - RMER19B LTR ERVK -14 888 1 4 1308 768 256 396 11 chr12 94836800 94837085 -26420445 - RMER6B LTR ERVK 0 461 67 4 1308 22 0 0 0 chr12 94837912 94837934 -26419596 + AT_rich Low_complexity Low_complexity 1 22 0 4 1308 180 0 0 0 chr12 94838355 94838375 -26419155 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 4 1308 644 315 88 21 chr12 94838560 94838888 -26418642 - Lx8 LINE L1 -158 7315 6966 4 1308 261 147 71 29 chr12 94838996 94839066 -26418464 + MLT1D LTR MaLR 411 483 -22 4 1308 273 330 125 0 chr12 94839596 94839708 -26417822 - Lx8 LINE L1 -180 7293 7168 4 1308 797 96 8 0 chr12 94839821 94839946 -26417584 + (TTCC)n Simple_repeat Simple_repeat 1 126 0 4 1308 287 277 75 9 chr12 94840560 94840668 -26416862 - B3A SINE B2 -77 118 6 4 1308 468 0 0 0 chr12 94840819 94840871 -26416659 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1308 506 127 0 106 chr12 94841550 94841673 -26415857 - Lx LINE L1 0 6654 6545 4 1308 265 326 43 5 chr12 94842671 94842859 -26414671 - L1MA6 LINE L1 -68 6232 6038 4 1308 250 224 90 0 chr12 94842925 94842992 -26414538 - Lx6 LINE L1 -564 6896 6824 4 1308 1127 245 35 12 chr12 94843538 94843877 -26413653 + Lx7 LINE L1 6976 7322 -374 4 1308 219 217 11 46 chr12 94843909 94843996 -26413534 + T-rich Low_complexity Low_complexity 1 84 0 4 1308 1109 211 78 11 chr12 94844003 94844271 -26413259 - Lx3C LINE L1 -2 6974 6689 4 1308 1005 213 67 61 chr12 94844261 94844591 -26412939 + Lx7 LINE L1 7365 7696 0 4 1308 32 26 0 0 chr12 94845151 94845190 -26412340 + AT_rich Low_complexity Low_complexity 1 39 0 4 1308 304 222 100 18 chr12 94845214 94845324 -26412206 - Lx9 LINE L1 0 7644 7526 4 1308 692 173 6 16 chr12 94845714 94845896 -26411634 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1308 360 111 0 0 chr12 94845899 94845953 -26411577 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1308 539 216 0 6 chr12 94845976 94846144 -26411386 + (CCA)n Simple_repeat Simple_repeat 1 167 0 5 1308 4627 164 14 61 chr12 94849023 94850011 -26407519 - L1_Mur2 LINE L1 -749 5128 4187 5 1308 706 164 0 0 chr12 94850013 94850141 -26407389 - L1_Mur2 LINE L1 -2153 3724 3597 5 1308 3899 163 12 65 chr12 94850144 94850478 -26407052 + Lx2 LINE L1 5115 5440 -437 5 1308 3585 68 2 0 chr12 94850478 94850936 -26406594 + L1_Mus2 LINE L1 6108 6566 0 5 1308 3899 163 12 65 chr12 94850936 94851019 -26406511 + Lx2 LINE L1 5441 5511 -366 5 1308 2080 130 148 35 chr12 94851019 94851450 -26406080 + RLTR45 LTR ERVK 3 482 0 5 1308 6725 151 14 42 chr12 94851450 94852759 -26404771 + Lx2 LINE L1 5512 6795 -202 5 1308 812 267 108 29 chr12 94854022 94854365 -26403165 + ORR1D1 LTR MaLR 5 374 0 5 1308 218 386 63 32 chr12 94856895 94857085 -26400445 - L2 LINE L2 -339 3080 2885 5 1308 227 336 93 86 chr12 94857374 94857394 -26400136 + B4 SINE B4 63 83 -209 5 1308 502 246 33 72 chr12 94857394 94857547 -26399983 + B1_Mur1 SINE Alu 1 147 -2 5 1308 28 0 0 0 chr12 94857779 94857807 -26399723 + AT_rich Low_complexity Low_complexity 1 28 0 5 1308 185 65 32 0 chr12 94857842 94857873 -26399657 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 5 1308 3047 53 10 25 chr12 94859142 94859544 -26397986 + MTA_Mm LTR MaLR 1 396 0 5 1308 396 344 35 62 chr12 94859815 94860041 -26397489 + L1M4 LINE L1 4040 4259 -1887 5 1308 507 82 0 0 chr12 94860165 94860238 -26397292 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1308 306 287 0 0 chr12 94860286 94860373 -26397157 + RMER1A Other Other 932 1018 -12 5 1308 239 79 0 26 chr12 94860373 94860412 -26397118 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 1308 213 39 0 0 chr12 94860673 94860699 -26396831 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1308 718 73 0 27 chr12 94860709 94860821 -26396709 + (GAAA)n Simple_repeat Simple_repeat 3 111 0 5 1308 29 0 0 0 chr12 94861009 94861038 -26396492 + AT_rich Low_complexity Low_complexity 1 29 0 5 1308 482 335 21 0 chr12 94861041 94861232 -26396298 - B3A SINE B2 -2 196 2 5 1308 859 216 80 102 chr12 94861508 94861921 -26395609 - Lx7 LINE L1 -1 7695 7292 5 1308 3603 157 12 12 chr12 94861950 94862548 -26394982 + Lx4A LINE L1 6461 7058 0 5 1308 225 83 0 0 chr12 94862877 94862913 -26394617 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1308 288 0 0 0 chr12 94864422 94864454 -26393076 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1308 859 223 25 0 chr12 94864454 94864651 -26392879 - Lx9 LINE L1 -180 7464 7263 5 1308 297 197 0 0 chr12 94865351 94865422 -26392108 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1308 249 269 25 16 chr12 94866057 94866178 -26391352 + (TA)n Simple_repeat Simple_repeat 2 123 0 5 1308 6107 54 34 2 chr12 94866615 94867407 -26390123 - L1Md_F2 LINE L1 -10 6572 5756 5 1308 280 59 0 0 chr12 94867820 94867854 -26389676 + L1Md_A LINE L1 6362 6395 -187 5 1308 31 44 0 0 chr12 94867864 94867909 -26389621 + AT_rich Low_complexity Low_complexity 1 45 0 5 1308 383 0 0 21 chr12 94870397 94870445 -26387085 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 5 1308 1189 43 0 0 chr12 94870447 94870588 -26386942 - B1_Mm SINE Alu -6 141 1 5 1308 1563 291 104 61 chr12 94870871 94871672 -26385858 + RMER13A LTR ERVK 1 835 -25 5 1308 302 224 0 0 chr12 94872406 94872464 -26385066 - RLTR14 LTR ERV1 -317 65 8 5 1308 522 83 0 0 chr12 94872496 94872568 -26384962 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 1308 1104 85 0 0 chr12 94872579 94872732 -26384798 + (GAAA)n Simple_repeat Simple_repeat 3 155 0 5 1308 329 0 24 0 chr12 94872766 94872807 -26384723 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1308 531 313 102 14 chr12 94872807 94873367 -26384163 + L1M2 LINE L1 3091 3701 -2442 5 1308 229 227 0 57 chr12 94873634 94873675 -26383855 + polypurine Low_complexity Low_complexity 2 39 0 5 1308 6179 64 14 8 chr12 94873675 94874478 -26383052 + RLTR13C2 LTR ERVK 1 808 0 5 1308 229 227 0 57 chr12 94874478 94874506 -26383024 + polypurine Low_complexity Low_complexity 40 67 0 5 1308 210 118 0 0 chr12 94875365 94875399 -26382131 + (CATA)n Simple_repeat Simple_repeat 3 36 0 5 1308 189 107 0 0 chr12 94875704 94875732 -26381798 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 5 1308 222 62 0 0 chr12 94875969 94876001 -26381529 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1308 22 0 0 0 chr12 94876376 94876398 -26381132 + AT_rich Low_complexity Low_complexity 1 22 0 5 1308 3397 296 81 33 chr12 94876398 94877029 -26380501 - Lx6 LINE L1 -11 7449 6738 5 1308 211 28 56 0 chr12 94877029 94877065 -26380465 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1308 3397 296 81 33 chr12 94877065 94877719 -26379811 - Lx6 LINE L1 -723 6737 6102 5 1308 437 34 0 17 chr12 94878672 94878732 -26378798 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1308 23 33 0 0 chr12 94878774 94878804 -26378726 + AT_rich Low_complexity Low_complexity 1 30 0 5 1308 288 209 0 0 chr12 94879124 94879210 -26378320 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 1308 216 250 14 27 chr12 94879211 94879285 -26378245 + (TATG)n Simple_repeat Simple_repeat 2 74 0 5 1308 246 62 0 0 chr12 94879339 94879371 -26378159 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1308 1026 83 7 40 chr12 94879376 94879527 -26378003 + B1_Mus1 SINE Alu 3 148 0 5 1308 929 138 6 0 chr12 94879682 94879841 -26377689 + (TTCC)n Simple_repeat Simple_repeat 1 160 0 5 1308 1840 229 13 46 chr12 94879906 94880012 -26377518 + L1_Mur3 LINE L1 1863 1966 -3914 5 1308 216 0 0 0 chr12 94880012 94880036 -26377494 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1308 1840 229 13 46 chr12 94880036 94880557 -26376973 + L1_Mur3 LINE L1 1967 2469 -3411 5 1308 1055 72 19 13 chr12 94880524 94880678 -26376852 + L1_Mus3 LINE L1 5841 5995 -643 5 1308 3216 51 2 24 chr12 94880678 94881103 -26376427 - L1Md_F3 LINE L1 -1 6583 6168 5 1308 3766 108 86 0 chr12 94881100 94881683 -26375847 + L1_Mus3 LINE L1 6002 6634 -4 5 1308 1793 232 58 84 chr12 94881697 94882456 -26375074 + L1_Mur3 LINE L1 2454 3192 -2688 5 1308 219 114 0 0 chr12 94882505 94882540 -26374990 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1308 385 316 55 39 chr12 94882561 94882742 -26374788 + ORR1E LTR MaLR 58 241 -118 5 1308 254 360 49 28 chr12 94883147 94883290 -26374240 - MamSINE1 SINE tRNA -128 162 17 5 1308 243 0 0 0 chr12 94883421 94883448 -26374082 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1308 401 279 0 81 chr12 94883448 94883608 -26373922 - RMER10B LTR ERVL -61 337 191 5 1308 1508 239 27 85 chr12 94883980 94884428 -26373102 + MT2A LTR ERVL 6 427 -106 5 1308 25 0 0 0 chr12 94885295 94885320 -26372210 + AT_rich Low_complexity Low_complexity 1 25 0 5 1308 202 291 25 0 chr12 94885874 94885953 -26371577 + (TATATG)n Simple_repeat Simple_repeat 5 85 0 5 1308 510 280 114 0 chr12 94886153 94886346 -26371184 + L1_Rod LINE L1 5633 5847 0 5 1308 4269 127 5 6 chr12 94886370 94887028 -26370502 - Lx LINE L1 -1 6653 5997 5 1308 7426 178 26 90 chr12 94887028 94888240 -26369290 + L1_Mm LINE L1 4178 5308 -575 5 1308 1433 69 0 0 chr12 94888240 94888429 -26369101 + L1_Mus1 LINE L1 6379 6567 0 5 1308 872 120 19 19 chr12 94888429 94888468 -26369062 + L1_Mus3 LINE L1 6601 6638 0 5 1308 3305 148 6 2 chr12 94888462 94889002 -26368528 + L1_Mm LINE L1 5309 5850 -33 5 1308 26 50 0 0 chr12 94889607 94889647 -26367883 + AT_rich Low_complexity Low_complexity 1 40 0 5 1308 238 174 14 28 chr12 94890843 94890914 -26366616 + (TTTG)n Simple_repeat Simple_repeat 1 70 0 5 1308 23 0 0 0 chr12 94891064 94891087 -26366443 + AT_rich Low_complexity Low_complexity 1 23 0 5 1308 297 302 85 14 chr12 94891558 94891699 -26365831 - L1MA5 LINE L1 -24 6276 6126 5 1308 617 309 58 34 chr12 94891796 94892208 -26365322 - L1MA5 LINE L1 -484 5816 5395 5 1308 512 348 84 17 chr12 94892517 94892815 -26364715 + MLT2D LTR ERVL 8 325 -89 5 1308 367 296 0 43 chr12 94894722 94894814 -26362716 + ORR1E LTR MaLR 24 111 -248 5 1308 3235 194 23 0 chr12 94894814 94895462 -26362068 - Lx3C LINE L1 -660 6316 5654 5 1308 297 262 75 37 chr12 94895462 94895569 -26361961 + ORR1E LTR MaLR 246 356 -23 5 1308 864 114 0 0 chr12 94895829 94895960 -26361570 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 5 1309 280 276 23 0 chr12 94896484 94896571 -26360959 + Lx7 LINE L1 7580 7668 -28 5 1309 275 376 27 9 chr12 94896612 94896722 -26360808 + ID_B1 SINE B4 88 199 -25 5 1309 25 0 0 0 chr12 94897285 94897310 -26360220 + AT_rich Low_complexity Low_complexity 1 25 0 5 1309 34 89 0 0 chr12 94897361 94897451 -26360079 + AT_rich Low_complexity Low_complexity 1 90 0 5 1309 200 239 0 42 chr12 94897682 94897730 -26359800 + polypurine Low_complexity Low_complexity 3 48 0 5 1309 411 38 0 0 chr12 94898562 94898615 -26358915 + (TTTTG)n Simple_repeat Simple_repeat 1 53 0 5 1309 954 70 39 0 chr12 94898615 94898744 -26358786 - B1_Mus1 SINE Alu -13 135 2 5 1309 207 0 0 0 chr12 94899272 94899295 -26358235 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1309 642 89 0 0 chr12 94899345 94899435 -26358095 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 5 1309 950 125 11 11 chr12 94899435 94899613 -26357917 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 1309 906 70 78 0 chr12 94899658 94899786 -26357744 + B1_Mus1 SINE Alu 3 140 -8 5 1309 255 31 0 0 chr12 94899787 94899819 -26357711 + (CAA)n Simple_repeat Simple_repeat 3 34 0 5 1309 313 318 34 120 chr12 94901167 94901342 -26356188 + RSINE1 SINE B4 4 163 -2 5 1309 223 149 55 18 chr12 94902425 94902534 -26354996 + (TA)n Simple_repeat Simple_repeat 1 113 0 5 1309 657 0 0 0 chr12 94903203 94903276 -26354254 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1309 1818 216 86 99 chr12 94903277 94903965 -26353565 + RMER6C LTR ERVK 8 686 -4 5 1309 784 141 11 0 chr12 94903965 94904142 -26353388 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1309 393 22 0 0 chr12 94905211 94905257 -26352273 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 5 1309 191 191 97 56 chr12 94906260 94906332 -26351198 - MIRb SINE MIR -56 212 138 5 1309 189 0 0 0 chr12 94906435 94906456 -26351074 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 1309 1415 126 31 35 chr12 94906456 94906711 -26350819 - Lx LINE L1 -16 6638 6385 6 1309 3778 161 173 75 chr12 94906866 94907306 -26350224 - RLTR25A LTR ERVK 0 1103 724 6 1309 2448 119 23 2 chr12 94907306 94907703 -26349827 - Lx2 LINE L1 -1 6996 6592 6 1309 3778 161 173 75 chr12 94907703 94908266 -26349264 - RLTR25A LTR ERVK -380 723 1 6 1309 243 366 0 41 chr12 94908266 94908345 -26349185 - ID_B1 SINE B4 -69 155 81 6 1309 696 245 13 0 chr12 94908873 94909024 -26348506 - RLTR26 LTR ERVK 0 642 490 6 1309 1395 168 103 14 chr12 94909064 94909286 -26348244 - RLTR26 LTR ERVK -228 414 172 6 1309 180 0 0 0 chr12 94909286 94909306 -26348224 + (G)n Simple_repeat Simple_repeat 1 20 0 6 1309 1395 168 103 14 chr12 94909306 94909373 -26348157 - RLTR26 LTR ERVK -471 171 100 6 1309 706 253 47 0 chr12 94909354 94909504 -26348026 + RLTR25A LTR ERVK 70 226 -877 6 1309 310 350 68 37 chr12 94909486 94909649 -26347881 + MLT1D LTR MaLR 231 398 -107 6 1309 390 21 0 0 chr12 94909661 94909708 -26347822 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1309 519 324 7 0 chr12 94909717 94909856 -26347674 - B3A SINE B2 -50 148 9 6 1309 450 363 29 24 chr12 94910000 94910209 -26347321 + B3 SINE B2 6 215 -1 6 1309 25 31 0 0 chr12 94910288 94910320 -26347210 + AT_rich Low_complexity Low_complexity 1 32 0 6 1309 269 257 43 17 chr12 94911165 94911280 -26346250 + L1MDb LINE L1 978 1095 -5314 6 1309 424 343 33 11 chr12 94911973 94912153 -26345377 - LTR52 LTR ERVL -237 184 1 6 1309 27 29 0 0 chr12 94912434 94912468 -26345062 + AT_rich Low_complexity Low_complexity 1 34 0 6 1309 291 202 0 0 chr12 94912512 94912591 -26344939 + CT-rich Low_complexity Low_complexity 2 80 0 6 1309 207 88 0 0 chr12 94912940 94912974 -26344556 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1309 318 106 0 0 chr12 94913358 94913405 -26344125 + (T)n Simple_repeat Simple_repeat 1 47 0 6 1309 1044 108 0 0 chr12 94913846 94913985 -26343545 + B1_Mus2 SINE Alu 2 140 -7 6 1309 216 67 0 0 chr12 94913986 94914016 -26343514 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 6 1309 316 352 37 0 chr12 94914017 94914125 -26343405 - RSINE1 SINE B4 -46 119 8 6 1309 24 32 0 0 chr12 94914334 94914365 -26343165 + AT_rich Low_complexity Low_complexity 1 31 0 6 1309 538 248 8 16 chr12 94914380 94914507 -26343023 - B3 SINE B2 -89 127 2 6 1309 434 289 115 5 chr12 94914510 94914701 -26342829 - B3 SINE B2 -4 212 1 6 1309 186 43 0 0 chr12 94916983 94917006 -26340524 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 6 1309 1773 162 53 78 chr12 94917371 94917745 -26339785 - L1VL4 LINE L1 -5802 500 136 6 1309 432 0 0 0 chr12 94917862 94917910 -26339620 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1309 24 0 0 0 chr12 94918173 94918197 -26339333 + AT_rich Low_complexity Low_complexity 1 24 0 6 1309 270 0 0 0 chr12 94918439 94918469 -26339061 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1309 315 304 113 51 chr12 94918480 94918657 -26338873 - B3A SINE B2 -10 188 1 6 1309 353 290 179 12 chr12 94918787 94919038 -26338492 + RMER20B LTR ERVK 100 392 -235 6 1309 204 40 0 0 chr12 94919469 94919494 -26338036 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1309 654 13 0 0 chr12 94920152 94920227 -26337303 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1309 314 241 34 25 chr12 94921237 94921356 -26336174 + Lx9 LINE L1 7378 7497 -147 6 1309 32 0 0 0 chr12 94921439 94921471 -26336059 + AT_rich Low_complexity Low_complexity 1 32 0 6 1309 21 0 0 0 chr12 94922024 94922045 -26335485 + AT_rich Low_complexity Low_complexity 1 21 0 6 1309 24 0 0 0 chr12 94924305 94924329 -26333201 + AT_rich Low_complexity Low_complexity 1 24 0 6 1309 592 267 7 7 chr12 94924688 94924823 -26332707 + B1_Mus2 SINE Alu 1 136 -11 6 1309 228 86 0 0 chr12 94924823 94924858 -26332672 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1309 592 267 7 7 chr12 94924858 94924869 -26332661 + B1_Mus2 SINE Alu 137 147 0 6 1309 721 260 11 55 chr12 94924892 94925075 -26332455 + B3 SINE B2 27 201 -15 6 1309 449 248 8 0 chr12 94925080 94925209 -26332321 + GA-rich Low_complexity Low_complexity 1 130 0 6 1309 26 30 0 0 chr12 94925349 94925382 -26332148 + AT_rich Low_complexity Low_complexity 1 33 0 6 1309 22 0 0 0 chr12 94926122 94926144 -26331386 + AT_rich Low_complexity Low_complexity 1 22 0 6 1309 24 0 0 0 chr12 94926620 94926644 -26330886 + AT_rich Low_complexity Low_complexity 1 24 0 6 1309 718 142 0 63 chr12 94927238 94927396 -26330134 + Lx LINE L1 6507 6654 0 6 1309 21 57 0 0 chr12 94927397 94927432 -26330098 + AT_rich Low_complexity Low_complexity 1 35 0 6 1309 2273 121 27 5 chr12 94927470 94927845 -26329685 - Lx2 LINE L1 -12 6985 6603 6 1309 30 45 0 0 chr12 94927892 94927936 -26329594 + AT_rich Low_complexity Low_complexity 1 44 0 6 1309 5574 55 0 11 chr12 94928118 94928832 -26328698 + L1Md_F2 LINE L1 5877 6582 0 6 1309 319 339 92 8 chr12 94930700 94930831 -26326699 + B3A SINE B2 18 159 -39 6 1309 225 65 0 0 chr12 94930834 94930865 -26326665 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1309 248 239 0 43 chr12 94931257 94931327 -26326203 - L1_Rod LINE L1 -314 5533 5467 6 1309 487 278 40 27 chr12 94931325 94931557 -26325973 - L1_Mur3 LINE L1 -803 5340 5115 6 1309 6943 135 16 2 chr12 94931573 94933115 -26324415 - L1_Mus4 LINE L1 -1 6635 5063 6 1309 1674 134 28 7 chr12 94933118 94933246 -26324284 - Lx LINE L1 -19 6635 6500 6 1309 447 35 0 0 chr12 94933246 94933303 -26324227 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1309 1674 134 28 7 chr12 94933303 94933459 -26324071 - Lx LINE L1 -155 6499 6345 6 1309 242 29 29 0 chr12 94933516 94933551 -26323979 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 6 1309 296 292 25 59 chr12 94933638 94933797 -26323733 + B3A SINE B2 53 211 -5 6 1309 1442 49 43 0 chr12 94934295 94934479 -26323051 - B2_Mm2 SINE B2 -3 192 1 6 1309 570 271 16 0 chr12 94936050 94936179 -26321351 - B1_Mur2 SINE Alu -13 136 6 6 1309 23 0 0 0 chr12 94936706 94936729 -26320801 + AT_rich Low_complexity Low_complexity 1 23 0 6 1309 5660 249 43 31 chr12 94937713 94938361 -26319169 + Lx7 LINE L1 5480 6177 -1519 6 1309 435 106 0 0 chr12 94938361 94938427 -26319103 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1309 5660 271 75 62 chr12 94938427 94939755 -26317775 + Lx7 LINE L1 6178 7467 -229 6 1309 189 0 0 0 chr12 94939755 94939776 -26317754 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1309 5660 271 75 62 chr12 94939776 94939984 -26317546 + Lx7 LINE L1 7468 7695 -1 6 1309 1252 345 72 12 chr12 94940015 94940684 -26316846 + Lx8 LINE L1 6156 6864 -609 6 1309 2622 102 15 10 chr12 94940740 94941136 -26316394 - MTB LTR MaLR -2 398 1 6 1309 811 327 21 48 chr12 94941149 94941528 -26316002 + Lx8 LINE L1 6969 7337 -136 6 1309 286 250 164 34 chr12 94941676 94941883 -26315647 + L1_Mur3 LINE L1 3353 3586 -2294 6 1309 208 288 17 0 chr12 94941902 94941961 -26315569 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1309 291 81 0 0 chr12 94942158 94942195 -26315335 + U2 snRNA snRNA 1 37 -151 6 1309 2641 201 100 22 chr12 94942199 94942867 -26314663 + RMER6D LTR ERVK 1 720 0 6 1309 254 349 0 0 chr12 94943431 94943494 -26314036 + PB1D10 SINE Alu 45 107 -10 6 1309 821 221 18 0 chr12 94944394 94944557 -26312973 - Lx7 LINE L1 -856 6840 6675 6 1309 569 326 24 63 chr12 94944555 94944665 -26312865 + Lx7 LINE L1 7048 7153 -543 6 1309 1321 211 99 19 chr12 94944665 94945028 -26312502 + ORR1B1 LTR MaLR 3 394 0 6 1309 569 326 24 63 chr12 94945028 94945297 -26312233 + Lx7 LINE L1 7154 7412 -284 6 1309 836 123 6 28 chr12 94945310 94945486 -26312044 + GA-rich Low_complexity Low_complexity 3 174 0 6 1309 810 145 0 0 chr12 94945488 94945626 -26311904 + (GGAA)n Simple_repeat Simple_repeat 4 141 0 6 1309 278 397 89 15 chr12 94945768 94945970 -26311560 - MLT1E2 LTR MaLR -72 555 339 6 1309 288 0 0 0 chr12 94946001 94946033 -26311497 + (TTA)n Simple_repeat Simple_repeat 1 32 0 6 1309 2859 43 3 0 chr12 94946187 94946530 -26311000 + L1_Mm LINE L1 5243 5586 -297 6 1309 7969 48 1 8 chr12 94946530 94947532 -26309998 + L1Md_F2 LINE L1 5587 6581 -1 6 1309 36 23 0 0 chr12 94948144 94948187 -26309343 + AT_rich Low_complexity Low_complexity 1 43 0 6 1309 399 89 0 0 chr12 94948472 94948528 -26309002 + (TTA)n Simple_repeat Simple_repeat 1 56 0 6 1309 2026 189 15 20 chr12 94948528 94948933 -26308597 - Lx2B LINE L1 -10 6990 6588 6 1309 468 204 101 11 chr12 94950351 94950529 -26307001 + RMER17C LTR ERVK 80 273 -137 6 1309 675 0 0 0 chr12 94950537 94950612 -26306918 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 6 1309 702 201 7 29 chr12 94950922 94951060 -26306470 - B1_Mus1 SINE Alu -7 141 7 6 1309 309 333 15 68 chr12 94950968 94951100 -26306430 - MT2B LTR ERVL -348 253 129 6 1309 1731 274 37 0 chr12 94951105 94951562 -26305968 - Lx6 LINE L1 -13 7447 6974 6 1309 236 104 60 0 chr12 94952097 94952164 -26305366 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 6 1309 180 0 0 0 chr12 94953310 94953330 -26304200 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1309 241 210 151 55 chr12 94953710 94953856 -26303674 - Lx9 LINE L1 -21 7623 7464 6 1309 192 179 0 0 chr12 94953864 94953903 -26303627 + (CATA)n Simple_repeat Simple_repeat 2 40 0 6 1309 636 324 53 33 chr12 94953909 94954266 -26303264 - Lx9 LINE L1 -127 7517 7154 6 1309 266 0 29 0 chr12 94954266 94954300 -26303230 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1309 636 324 53 33 chr12 94954300 94954341 -26303189 - Lx9 LINE L1 -491 7153 7112 6 1309 2707 125 70 13 chr12 94954388 94954860 -26302670 - Lx3B LINE L1 0 6973 6433 6 1309 330 318 59 53 chr12 94956150 94956472 -26301058 + L1MA6 LINE L1 5575 5898 -402 6 1309 22 35 0 0 chr12 94956645 94956674 -26300856 + AT_rich Low_complexity Low_complexity 1 29 0 6 1309 182 91 0 29 chr12 94957519 94957553 -26299977 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 6 1309 958 212 113 129 chr12 94958460 94958838 -26298692 + MT2A LTR ERVL 1 518 -83 6 1309 540 77 0 0 chr12 94958844 94958922 -26298608 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 1309 358 413 76 0 chr12 94959184 94959356 -26298174 + ID_B1 SINE B4 8 192 -32 7 1309 270 160 0 0 chr12 94959370 94959420 -26298110 + GA-rich Low_complexity Low_complexity 3 52 0 7 1309 4925 31 0 0 chr12 94959681 94960255 -26297275 + L1Md_T LINE L1 6007 6580 -2 7 1309 493 86 0 0 chr12 94961012 94961082 -26296448 + L1_Mus1 LINE L1 5924 5993 -574 7 1309 266 180 16 0 chr12 94961374 94961435 -26296095 + (TATG)n Simple_repeat Simple_repeat 3 64 0 7 1309 394 354 71 21 chr12 94962357 94962695 -26294835 - L1MEf LINE L1 -5281 919 565 7 1309 213 39 0 0 chr12 94962765 94962791 -26294739 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1309 283 355 0 5 chr12 94963080 94963173 -26294357 - B1F SINE Alu -15 102 13 7 1309 375 326 65 22 chr12 94963343 94963481 -26294049 - B4A SINE B4 -147 145 2 7 1309 771 179 21 72 chr12 94964451 94964619 -26292911 + B2_Mm2 SINE B2 4 164 -31 7 1309 441 0 0 0 chr12 94964619 94964668 -26292862 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1309 771 179 21 72 chr12 94964668 94964692 -26292838 + B2_Mm2 SINE B2 165 186 -9 7 1309 637 95 0 0 chr12 94964713 94964797 -26292733 - L1_Mus2 LINE L1 -97 6469 6386 7 1309 402 240 113 27 chr12 94965001 94965151 -26292379 - L1MD3 LINE L1 -559 7436 7274 7 1309 37999 42 0 2 chr12 94965624 94971756 -26285774 - L1Md_T LINE L1 0 6585 372 7 1309 3382 150 30 28 chr12 94971766 94972369 -26285161 - Lx2 LINE L1 0 6997 6394 7 1309 4971 129 11 1 chr12 94972370 94973133 -26284397 + Lx2 LINE L1 5596 6365 -632 7 1309 828 201 94 103 chr12 94974300 94974660 -26282870 + Lx9 LINE L1 7288 7644 0 7 1309 32 43 0 0 chr12 94974677 94974723 -26282807 + AT_rich Low_complexity Low_complexity 1 46 0 7 1309 4594 168 44 12 chr12 94975664 94976519 -26281011 + Lx2 LINE L1 6115 6997 0 7 1309 263 231 76 13 chr12 94976542 94976621 -26280909 + MTEa LTR MaLR 293 376 -3 7 1309 181 328 16 16 chr12 94976719 94976781 -26280749 - MIR SINE MIR 0 262 201 7 1309 1134 126 0 0 chr12 94978259 94978494 -26279036 + (TG)n Simple_repeat Simple_repeat 1 235 0 7 1309 313 200 0 0 chr12 94980384 94980439 -26277091 + Lx4B LINE L1 6785 6839 -219 7 1309 1604 203 8 16 chr12 94980420 94980864 -26276666 + Lx4B LINE L1 6483 7009 -49 7 1309 387 0 0 0 chr12 94980901 94980944 -26276586 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 7 1309 233 127 36 0 chr12 94981314 94981369 -26276161 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 7 1309 1637 81 21 0 chr12 94981502 94981736 -26275794 - L1_Mm LINE L1 -420 5463 5225 7 1309 207 100 0 0 chr12 94981907 94981937 -26275593 + (TGG)n Simple_repeat Simple_repeat 1 30 0 7 1309 274 203 203 0 chr12 94981952 94982016 -26275514 + MIRb SINE MIR 161 237 -31 7 1309 183 156 0 0 chr12 94982260 94982292 -26275238 + A-rich Low_complexity Low_complexity 1 32 0 7 1309 24 32 0 0 chr12 94983257 94983288 -26274242 + AT_rich Low_complexity Low_complexity 1 31 0 7 1309 288 0 0 0 chr12 94984178 94984210 -26273320 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1309 3008 61 0 30 chr12 94984226 94984631 -26272899 + L1_Mus1 LINE L1 6174 6566 -1 7 1309 694 230 19 6 chr12 94984941 94985103 -26272427 + U1 snRNA snRNA 1 164 -1 7 1309 2707 99 16 0 chr12 94985210 94985592 -26271938 + L1_Mus4 LINE L1 6000 6387 -249 7 1309 1673 129 17 38 chr12 94986002 94986293 -26271237 + L1_Mus4 LINE L1 6349 6633 -3 7 1309 1236 195 52 33 chr12 94988434 94988704 -26268826 - Lx2B LINE L1 -1 6999 6725 7 1309 2475 52 28 3 chr12 94989226 94989552 -26267978 - L1_Mus3 LINE L1 -7 6631 6298 7 1309 195 188 0 0 chr12 94989616 94989664 -26267866 + T-rich Low_complexity Low_complexity 1 48 0 7 1309 1137 82 0 0 chr12 94989665 94989811 -26267719 - B1_Mm SINE Alu -1 146 1 7 1309 21 0 0 0 chr12 94990076 94990097 -26267433 + AT_rich Low_complexity Low_complexity 1 21 0 7 1309 393 75 0 0 chr12 94990153 94990206 -26267324 + (TCC)n Simple_repeat Simple_repeat 3 55 0 7 1309 2126 174 10 28 chr12 94990211 94990607 -26266923 - Lx4A LINE L1 -5 7053 6665 7 1309 594 157 0 0 chr12 94990615 94990717 -26266813 + Lx4A LINE L1 5866 5967 -1091 7 1309 4661 126 18 7 chr12 94990863 94992024 -26265506 + Lx LINE L1 5101 6251 -403 7 1309 423 0 0 0 chr12 94992024 94992071 -26265459 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1309 4012 132 4 55 chr12 94992071 94992364 -26265166 + Lx LINE L1 6248 6619 -35 7 1309 7248 85 4 6 chr12 94992716 94993709 -26263821 - L1_Mus3 LINE L1 -13 6625 5635 7 1309 1023 107 0 17 chr12 94993888 94994060 -26263470 + (TTTC)n Simple_repeat Simple_repeat 3 171 0 7 1309 984 110 0 0 chr12 94994061 94994197 -26263333 - B1_Mus1 SINE Alu -12 136 1 7 1309 606 214 43 0 chr12 94994306 94994446 -26263084 + B1_Mus1 SINE Alu 1 146 -2 7 1309 582 95 0 0 chr12 94995617 94995712 -26261818 + (CA)n Simple_repeat Simple_repeat 2 96 0 7 1309 1341 131 135 0 chr12 94996283 94996527 -26261003 - Lx3_Mus LINE L1 -8 7001 6725 7 1309 665 323 116 30 chr12 94996752 94997295 -26260235 + Lx8 LINE L1 6596 7185 -288 7 1309 679 352 57 31 chr12 94997328 94997454 -26260076 - MTD LTR MaLR -17 402 281 7 1309 663 13 0 0 chr12 94997454 94997530 -26260000 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1309 679 352 57 31 chr12 94997530 94997752 -26259778 - MTD LTR MaLR -139 280 45 7 1309 22 56 0 0 chr12 94999145 94999181 -26258349 + AT_rich Low_complexity Low_complexity 1 36 0 7 1309 336 333 18 9 chr12 94999391 94999503 -26258027 + LTR53 LTR ERVL 229 341 -178 7 1309 21 0 0 0 chr12 94999665 94999686 -26257844 + AT_rich Low_complexity Low_complexity 1 21 0 7 1309 446 396 0 15 chr12 94999799 94999999 -26257531 - Lx8 LINE L1 -141 7332 7136 7 1309 1573 340 45 31 chr12 95000000 95000771 -26256759 - Lx8 LINE L1 -339 7134 6353 1 1309 1834 316 95 43 chr12 95000782 95001741 -26255789 + MTC-int LTR MaLR 245 1253 -5 2 1309 1508 290 75 46 chr12 95002224 95003105 -26254425 + RMER1B Other Other 1 1060 -6 3 1309 31 44 0 0 chr12 95004494 95004539 -26252991 + AT_rich Low_complexity Low_complexity 1 45 0 4 1309 821 118 63 0 chr12 95005082 95005209 -26252321 + B1_Mus1 SINE Alu 3 137 -11 5 1309 197 0 71 0 chr12 95005209 95005237 -26252293 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1309 4417 229 48 23 chr12 95005594 95006029 -26251501 + L1_Mur1 LINE L1 833 1258 -5726 7 1309 522 0 0 0 chr12 95006029 95006087 -26251443 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1309 4417 187 35 28 chr12 95006087 95007088 -26250442 + L1_Mur1 LINE L1 1259 2267 -3619 7 1309 230 245 0 19 chr12 95007269 95007323 -26250207 - L1M4 LINE L1 -2305 3841 3789 9 1309 600 275 14 0 chr12 95007789 95007927 -26249603 + B1_Mur4 SINE Alu 9 148 -2 1 1309 729 317 97 71 chr12 95007987 95008639 -26248891 - RMER13A LTR ERVK -97 763 95 1 1309 21 0 0 0 chr12 95008776 95008797 -26248733 + AT_rich Low_complexity Low_complexity 1 21 0 1 1309 1099 102 0 0 chr12 95008832 95008979 -26248551 + B1_Mus2 SINE Alu 1 147 0 1 1309 714 84 0 0 chr12 95010217 95010324 -26247206 + (TG)n Simple_repeat Simple_repeat 2 108 0 1 1309 299 361 83 7 chr12 95010329 95010474 -26247056 - B3A SINE B2 -38 160 5 1 1309 28 29 0 0 chr12 95011087 95011122 -26246408 + AT_rich Low_complexity Low_complexity 1 35 0 1 1309 420 309 169 16 chr12 95011249 95011433 -26246097 - B3 SINE B2 -4 212 1 1 1309 21 0 0 0 chr12 95011530 95011551 -26245979 + AT_rich Low_complexity Low_complexity 1 21 0 1 1309 402 74 0 0 chr12 95011634 95011688 -26245842 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 1309 1054 336 62 35 chr12 95011690 95012291 -26245239 - Lx8 LINE L1 -729 6744 6128 2 1309 2944 249 45 9 chr12 95012983 95013664 -26243866 - Lx5 LINE L1 -3 7047 6342 2 1309 285 116 0 0 chr12 95013906 95013949 -26243581 - Lx2B LINE L1 -674 6326 6284 2 1309 838 260 74 9 chr12 95013948 95014177 -26243353 + Lx2 LINE L1 6754 6997 0 2 1309 509 369 30 35 chr12 95014187 95014555 -26242975 - Lx8 LINE L1 -214 7259 6894 2 1309 240 340 19 0 chr12 95014925 95015031 -26242499 - Lx8 LINE L1 -952 6521 6414 2 1309 229 287 104 0 chr12 95015567 95015682 -26241848 - Lx5 LINE L1 -1188 5862 5736 2 1309 310 306 152 18 chr12 95017076 95017299 -26240231 + L1M2 LINE L1 5073 5325 -818 2 1309 2166 204 69 69 chr12 95017633 95018046 -26239484 + Lx5 LINE L1 869 1358 -4519 2 1309 967 73 73 0 chr12 95018046 95018183 -26239347 - B1_Mm SINE Alu 0 147 1 2 1309 2166 172 44 140 chr12 95018183 95018584 -26238946 + Lx5 LINE L1 1359 1690 -4187 2 1309 180 0 0 0 chr12 95018584 95018604 -26238926 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1309 2166 172 44 140 chr12 95018604 95018763 -26238767 + Lx5 LINE L1 1691 1865 -4012 2 1309 2739 86 58 0 chr12 95018763 95019157 -26238373 + RLTR10C LTR ERVK 1 417 -19 2 1309 9436 224 69 108 chr12 95019162 95019336 -26238194 + Lx5 LINE L1 1882 2057 -3823 2 1309 324 120 0 0 chr12 95019336 95019386 -26238144 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1309 9436 224 69 108 chr12 95019386 95020228 -26237302 + Lx5 LINE L1 2058 2918 -2962 2 1309 1734 110 135 6 chr12 95020228 95020547 -26236983 + BGLII LTR ERVK 62 421 0 3 1309 9436 224 69 108 chr12 95020547 95021450 -26236080 + Lx5 LINE L1 2919 3844 -2036 2 1309 249 57 0 0 chr12 95021450 95021485 -26236045 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1309 9436 224 69 108 chr12 95021485 95022740 -26234790 + Lx5 LINE L1 3845 5238 -642 2 1309 3659 113 62 24 chr12 95022741 95023401 -26234129 + RMER17A LTR ERVK 1 685 -66 3 1309 3191 184 24 0 chr12 95023402 95023555 -26233975 + Lx5 LINE L1 5288 5444 -433 2 1309 288 0 0 0 chr12 95023555 95023587 -26233943 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1309 3191 237 40 20 chr12 95023587 95024681 -26232849 + Lx5 LINE L1 5445 6219 -831 2 1309 333 0 0 0 chr12 95024701 95024738 -26232792 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 3 1309 22 35 0 0 chr12 95024928 95024957 -26232573 + AT_rich Low_complexity Low_complexity 1 29 0 3 1309 305 334 276 52 chr12 95025503 95025922 -26231608 + Lx9 LINE L1 6601 7113 -531 3 1310 1678 51 0 0 chr12 95027647 95027862 -26229668 - L1Md_A LINE L1 0 6582 6368 3 1310 249 128 0 0 chr12 95028879 95028926 -26228604 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1310 226 217 75 0 chr12 95028935 95029041 -26228489 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 4 1310 495 0 0 0 chr12 95029075 95029130 -26228400 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 4 1310 226 94 0 0 chr12 95030209 95030241 -26227289 - L1_Mus2 LINE L1 -630 5936 5905 4 1310 1393 91 0 0 chr12 95030241 95030439 -26227091 + L1Md_F2 LINE L1 6374 6571 -11 4 1310 315 336 23 31 chr12 95031333 95031462 -26226068 + MER34 LTR ERV1 1 128 -414 4 1310 33 56 0 0 chr12 95032060 95032114 -26225416 + AT_rich Low_complexity Low_complexity 1 54 0 4 1310 405 347 62 5 chr12 95032179 95032373 -26225157 - B3 SINE B2 -11 205 1 4 1310 36 23 0 0 chr12 95032463 95032506 -26225024 + AT_rich Low_complexity Low_complexity 1 43 0 4 1310 612 261 28 0 chr12 95032655 95032835 -26224695 - Lx9 LINE L1 -180 7464 7280 4 1310 27 49 0 0 chr12 95033134 95033175 -26224355 + AT_rich Low_complexity Low_complexity 1 41 0 4 1310 240 111 0 0 chr12 95033216 95033261 -26224269 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 4 1310 3335 84 4 0 chr12 95033816 95034270 -26223260 - L1_Mus1 LINE L1 -1 6566 6111 5 1310 413 333 14 0 chr12 95034363 95034501 -26223029 + B1_Mur1 SINE Alu 2 141 -8 5 1310 327 183 141 8 chr12 95036279 95036400 -26221130 - Lx9 LINE L1 -1 7643 7507 5 1310 21 71 0 0 chr12 95036694 95036736 -26220794 + AT_rich Low_complexity Low_complexity 1 42 0 5 1310 1075 121 12 0 chr12 95036741 95036906 -26220624 - L1_Mm LINE L1 -794 5089 4923 5 1310 579 84 84 0 chr12 95036907 95037002 -26220528 + L1_Mus1 LINE L1 6463 6565 -2 5 1310 21 0 0 0 chr12 95037109 95037130 -26220400 + AT_rich Low_complexity Low_complexity 1 21 0 5 1310 345 317 33 82 chr12 95038324 95038336 -26219194 - B2_Mm2 SINE B2 -21 174 163 5 1310 627 60 0 0 chr12 95038336 95038420 -26219110 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1310 488 281 34 28 chr12 95038420 95038589 -26218941 - B3A SINE B2 -33 162 2 5 1310 1120 258 71 49 chr12 95039511 95039614 -26217916 - RMER19C LTR ERVK -2 609 510 5 1310 888 240 48 74 chr12 95039614 95039772 -26217758 + RLTR9A LTR ERVK 1 165 -203 6 1310 243 0 0 0 chr12 95039772 95039799 -26217731 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1310 888 240 48 74 chr12 95039799 95040018 -26217512 + RLTR9A LTR ERVK 166 367 -1 6 1310 1120 258 71 49 chr12 95040018 95040264 -26217266 - RMER19C LTR ERVK -102 509 253 5 1310 192 97 0 0 chr12 95040995 95041026 -26216504 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1310 240 273 26 0 chr12 95041267 95041344 -26216186 + CT-rich Low_complexity Low_complexity 1 79 0 6 1310 359 297 102 0 chr12 95042685 95042803 -26214727 + B1_Mur2 SINE Alu 1 130 -19 6 1310 531 45 0 0 chr12 95042803 95042869 -26214661 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1310 29 28 0 0 chr12 95043611 95043647 -26213883 + AT_rich Low_complexity Low_complexity 1 36 0 6 1310 32 75 0 0 chr12 95044457 95044524 -26213006 + AT_rich Low_complexity Low_complexity 1 67 0 6 1310 285 281 90 109 chr12 95045320 95045476 -26212054 + B3A SINE B2 46 198 0 6 1310 315 0 0 0 chr12 95045594 95045629 -26211901 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1310 342 0 0 0 chr12 95045783 95045821 -26211709 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1310 257 182 52 0 chr12 95046063 95046140 -26211390 + (TA)n Simple_repeat Simple_repeat 1 81 0 7 1310 203 138 50 33 chr12 95047045 95047105 -26210425 + T-rich Low_complexity Low_complexity 4 64 0 7 1310 22 0 0 0 chr12 95048737 95048759 -26208771 + AT_rich Low_complexity Low_complexity 1 22 0 7 1310 292 311 134 21 chr12 95050472 95050666 -26206864 - B3 SINE B2 0 216 1 7 1310 321 351 114 28 chr12 95052185 95052296 -26205234 + HAL1-3A_ME LINE L1 1976 2091 -767 7 1310 1053 101 5 32 chr12 95052296 95052481 -26205049 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1310 321 351 114 28 chr12 95052481 95052580 -26204950 + HAL1-3A_ME LINE L1 2092 2203 -655 7 1310 370 31 113 0 chr12 95052584 95052681 -26204849 + (GA)n Simple_repeat Simple_repeat 2 109 0 7 1310 21 0 0 0 chr12 95053868 95053889 -26203641 + AT_rich Low_complexity Low_complexity 1 21 0 7 1310 192 200 0 0 chr12 95053910 95053955 -26203575 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1310 828 242 84 10 chr12 95054004 95054313 -26203217 - Lx9 LINE L1 -22 7622 7291 8 1310 775 251 19 23 chr12 95054307 95054523 -26203007 + Lx9 LINE L1 5750 5964 -1680 8 1310 24 77 0 0 chr12 95054524 95054576 -26202954 + AT_rich Low_complexity Low_complexity 1 52 0 8 1310 342 0 0 0 chr12 95055120 95055158 -26202372 + (TAG)n Simple_repeat Simple_repeat 1 38 0 8 1310 728 361 7 24 chr12 95055231 95055526 -26202004 + B4A SINE B4 1 290 -2 8 1310 320 67 0 22 chr12 95055573 95055619 -26201911 + HAL1-3A_ME LINE L1 1975 2019 -839 8 1310 234 191 0 0 chr12 95056048 95056095 -26201435 + GA-rich Low_complexity Low_complexity 3 49 0 8 1310 500 297 15 65 chr12 95057885 95058091 -26199439 + ORR1D2 LTR MaLR 193 394 0 8 1310 21 36 0 0 chr12 95058243 95058271 -26199259 + AT_rich Low_complexity Low_complexity 1 28 0 8 1310 467 336 14 0 chr12 95059593 95059733 -26197797 + B3A SINE B2 1 142 -56 8 1310 574 227 27 34 chr12 95060710 95060856 -26196674 - B1_Mus1 SINE Alu -1 147 3 9 1310 4147 143 6 86 chr12 95061032 95061814 -26195716 + Lx3B LINE L1 6251 6970 -3 9 1310 351 78 0 0 chr12 95061817 95061868 -26195662 + (TAA)n Simple_repeat Simple_repeat 1 51 0 9 1310 223 240 20 0 chr12 95062528 95062578 -26194952 + B4A SINE B4 27 77 -215 9 1310 2499 319 111 25 chr12 95062958 95064342 -26193188 - Tigger1 DNA MER2_type -8 2410 909 9 1310 23 33 0 0 chr12 95064506 95064536 -26192994 + AT_rich Low_complexity Low_complexity 1 30 0 9 1310 28 61 0 0 chr12 95064583 95064632 -26192898 + AT_rich Low_complexity Low_complexity 1 49 0 9 1310 291 320 103 39 chr12 95066974 95067130 -26190400 - RMER2 LTR ERV1 -29 538 373 9 1310 1673 257 93 24 chr12 95067283 95067745 -26189785 - RMER13A LTR ERVK -194 666 173 9 1310 699 266 102 75 chr12 95067981 95068424 -26189106 - RMER17A-int LTR ERVK -190 1538 1084 9 1310 204 155 69 0 chr12 95068434 95068447 -26189083 + A-rich Low_complexity Low_complexity 2 14 0 1 1310 180 0 0 0 chr12 95068447 95068467 -26189063 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1310 204 155 69 0 chr12 95068467 95068511 -26189019 + A-rich Low_complexity Low_complexity 15 62 0 1 1310 435 211 21 0 chr12 95068613 95068708 -26188822 - RMER17A-int LTR ERVK -644 1084 988 9 1310 320 225 43 79 chr12 95068761 95068901 -26188629 - RMER17A-int LTR ERVK -746 982 848 9 1310 586 120 24 16 chr12 95069334 95069461 -26188069 + GA-rich Low_complexity Low_complexity 2 129 0 1 1310 466 309 29 105 chr12 95069567 95069777 -26187753 - RMER13A LTR ERVK 0 860 667 1 1310 526 292 0 7 chr12 95070348 95070486 -26187044 - B1_Mur1 SINE Alu -1 148 12 1 1310 1112 95 0 0 chr12 95070560 95070708 -26186822 + B1_Mus1 SINE Alu 1 148 0 1 1310 3709 53 2 15 chr12 95070803 95071283 -26186247 + L1Md_F3 LINE L1 6111 6584 0 1 1310 257 89 22 0 chr12 95071742 95071787 -26185743 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 1 1310 22 56 0 0 chr12 95071876 95071912 -26185618 + AT_rich Low_complexity Low_complexity 1 36 0 1 1310 568 340 75 16 chr12 95072262 95072582 -26184948 + Lx8 LINE L1 6881 7219 -254 1 1310 227 183 70 0 chr12 95072677 95072748 -26184782 + A-rich Low_complexity Low_complexity 2 77 0 1 1310 31 26 0 0 chr12 95073631 95073669 -26183861 + AT_rich Low_complexity Low_complexity 1 38 0 1 1310 32025 90 7 6 chr12 95073737 95078903 -26178627 + L1Md_F2 LINE L1 416 5585 -298 1 1310 7683 70 1 5 chr12 95078904 95079904 -26177626 + L1Md_F2 LINE L1 5587 6582 0 1 1310 396 155 0 0 chr12 95080156 95080227 -26177303 + (CATA)n Simple_repeat Simple_repeat 2 72 0 1 1310 232 247 52 0 chr12 95081417 95081494 -26176036 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 1 1310 535 208 0 0 chr12 95081543 95081639 -26175891 + Lx5 LINE L1 6478 6573 -477 1 1310 8684 137 17 6 chr12 95081662 95083047 -26174483 - Lx2 LINE L1 -4 6993 5593 1 1310 1519 252 55 35 chr12 95083033 95083436 -26174094 + Lx5 LINE L1 6584 6994 -56 1 1310 21 82 0 0 chr12 95083447 95083496 -26174034 + AT_rich Low_complexity Low_complexity 1 49 0 1 1310 25 65 0 0 chr12 95084268 95084314 -26173216 + AT_rich Low_complexity Low_complexity 1 46 0 1 1310 23 0 0 0 chr12 95084536 95084559 -26172971 + AT_rich Low_complexity Low_complexity 1 23 0 1 1310 3554 120 93 9 chr12 95085027 95085990 -26171540 + L1_Mus3 LINE L1 5622 6479 -159 1 1310 847 83 0 8 chr12 95085990 95086112 -26171418 + B2_Mm2 SINE B2 1 121 -74 1 1310 1058 75 0 88 chr12 95086113 95086273 -26171257 + B1_Mus1 SINE Alu 2 147 -1 1 1310 207 0 0 0 chr12 95086274 95086297 -26171233 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1310 773 117 28 0 chr12 95086297 95086442 -26171088 + L1_Mus3 LINE L1 6471 6619 -19 1 1310 432 0 0 0 chr12 95086442 95086490 -26171040 + (TAA)n Simple_repeat Simple_repeat 3 50 0 1 1310 1296 252 94 24 chr12 95086553 95086743 -26170787 + Lx6 LINE L1 6920 7134 -326 1 1310 1030 88 0 45 chr12 95086743 95086754 -26170776 - B1_Mus1 SINE Alu -1 147 137 1 1310 338 0 24 0 chr12 95086754 95086796 -26170734 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1310 1030 88 0 45 chr12 95086796 95086938 -26170592 - B1_Mus1 SINE Alu -12 136 1 1 1310 1296 229 109 30 chr12 95086938 95087205 -26170325 + Lx6 LINE L1 7135 7271 -189 1 1310 639 316 39 16 chr12 95087237 95087491 -26170039 - Lx9 LINE L1 -695 6949 6690 1 1310 889 58 34 28 chr12 95087908 95088085 -26169445 + (CAAAA)n Simple_repeat Simple_repeat 3 180 0 1 1310 506 336 35 22 chr12 95088168 95088396 -26169134 - Lx9 LINE L1 -1072 6572 6342 1 1310 540 289 77 10 chr12 95088791 95088987 -26168543 - B3 SINE B2 -6 210 2 1 1310 702 105 0 0 chr12 95089110 95089224 -26168306 + (GA)n Simple_repeat Simple_repeat 2 115 0 1 1310 372 158 0 0 chr12 95089294 95089370 -26168160 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1310 202 205 0 0 chr12 95090082 95090121 -26167409 + A-rich Low_complexity Low_complexity 4 42 0 1 1310 732 274 96 19 chr12 95090988 95091111 -26166419 - Lx9 LINE L1 -5 7639 7499 1 1310 207 69 0 0 chr12 95091111 95091140 -26166390 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1310 732 274 96 19 chr12 95091140 95091329 -26166201 - Lx9 LINE L1 -146 7498 7304 1 1310 453 36 0 0 chr12 95091373 95091428 -26166102 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1310 414 0 0 0 chr12 95091427 95091473 -26166057 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1310 1880 251 108 27 chr12 95091473 95092314 -26165216 + Lx9 LINE L1 6343 7251 -393 1 1310 402 159 0 0 chr12 95092500 95092607 -26164923 + A-rich Low_complexity Low_complexity 1 107 0 1 1310 23 33 0 0 chr12 95092989 95093019 -26164511 + AT_rich Low_complexity Low_complexity 1 30 0 1 1310 548 189 15 34 chr12 95093091 95093227 -26164303 + Lx4A LINE L1 6495 6630 -428 1 1310 447 35 0 0 chr12 95093316 95093373 -26164157 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1310 21 0 0 0 chr12 95093662 95093683 -26163847 + AT_rich Low_complexity Low_complexity 1 21 0 1 1310 261 250 0 0 chr12 95095586 95095678 -26161852 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 1310 564 267 11 120 chr12 95095678 95095861 -26161669 - RSINE1 SINE B4 0 165 3 1 1310 1809 163 149 46 chr12 95096556 95096973 -26160557 + RMER16 LTR ERVK 74 533 0 1 1310 279 114 0 0 chr12 95097284 95097328 -26160202 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 1 1310 525 176 55 70 chr12 95097752 95097880 -26159650 + ORR1B1 LTR MaLR 9 134 -260 1 1310 256 200 66 16 chr12 95098148 95098209 -26159321 - RSINE1 SINE B4 -91 74 11 1 1310 1567 138 124 0 chr12 95098251 95098542 -26158988 + IAPEY3_LTR LTR ERVK 1 327 -5 1 1310 447 73 0 0 chr12 95098617 95098685 -26158845 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1310 24 0 0 0 chr12 95098830 95098854 -26158676 + AT_rich Low_complexity Low_complexity 1 24 0 1 1310 21 0 0 0 chr12 95099088 95099109 -26158421 + AT_rich Low_complexity Low_complexity 1 21 0 1 1310 332 304 24 0 chr12 95099173 95099298 -26158232 + L1MA5 LINE L1 6143 6270 -30 1 1310 417 86 0 0 chr12 95099310 95099368 -26158162 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1 1310 8259 110 26 30 chr12 95099368 95100958 -26156572 - Lx3A LINE L1 -14 6967 5374 1 1310 639 313 40 36 chr12 95101276 95101498 -26156032 + B4A SINE B4 2 224 -68 1 1310 396 232 24 0 chr12 95101497 95101579 -26155951 + B1_Mus2 SINE Alu 59 142 -5 1 1310 829 175 6 6 chr12 95101579 95101680 -26155850 + polypurine Low_complexity Low_complexity 1 101 0 1 1310 1229 89 0 11 chr12 95101680 95101862 -26155668 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1310 829 175 6 6 chr12 95101862 95101932 -26155598 + polypurine Low_complexity Low_complexity 102 172 0 1 1310 21 0 0 0 chr12 95103181 95103202 -26154328 + AT_rich Low_complexity Low_complexity 1 21 0 1 1310 255 290 66 46 chr12 95104234 95104386 -26153144 + MER3 DNA MER1_type 15 169 -40 1 1310 242 309 191 0 chr12 95105089 95105183 -26152347 - B1_Mur3 SINE Alu -8 112 1 1 1310 305 187 13 0 chr12 95105405 95105480 -26152050 + GA-rich Low_complexity Low_complexity 3 78 0 1 1310 32 26 0 0 chr12 95106015 95106054 -26151476 + AT_rich Low_complexity Low_complexity 1 39 0 1 1310 25 0 0 0 chr12 95106094 95106119 -26151411 + AT_rich Low_complexity Low_complexity 1 25 0 1 1310 3200 135 96 17 chr12 95106134 95106716 -26150814 - Lx2 LINE L1 0 6997 6370 1 1310 466 286 121 42 chr12 95106724 95106914 -26150616 - Lx5 LINE L1 -46 7004 6800 1 1310 679 326 8 36 chr12 95106901 95107149 -26150381 - Lx6 LINE L1 -46 7414 7174 1 1310 642 286 12 6 chr12 95107089 95107254 -26150276 + Lx5 LINE L1 6651 6816 -234 1 1310 238 280 152 20 chr12 95107438 95107557 -26149973 - L1M4 LINE L1 -903 5243 5102 1 1310 414 0 0 0 chr12 95107557 95107603 -26149927 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 1310 238 280 152 20 chr12 95107603 95107680 -26149850 - L1M4 LINE L1 -1045 5101 5022 1 1310 366 309 126 41 chr12 95107778 95108048 -26149482 - L1M4 LINE L1 -1304 4842 4550 1 1310 284 295 31 21 chr12 95108052 95108149 -26149381 - MTE2a LTR MaLR -4 375 278 1 1310 403 259 97 9 chr12 95108438 95108551 -26148979 + RMER20B LTR ERVK 1 123 -504 1 1310 189 0 0 0 chr12 95108725 95108746 -26148784 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1310 456 264 135 35 chr12 95108746 95108946 -26148584 + RMER20B LTR ERVK 162 381 -246 1 1310 354 108 0 0 chr12 95109017 95109082 -26148448 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 1 1310 323 294 94 30 chr12 95109129 95109459 -26148071 - L1M4 LINE L1 -1635 4511 4161 1 1310 251 343 61 0 chr12 95110001 95110100 -26147430 + MT2A LTR ERVL 294 398 -135 1 1310 26211 73 70 20 chr12 95110256 95112124 -26145406 - L1Md_F2 LINE L1 0 6582 4732 1 1310 288 70 0 0 chr12 95112124 95112167 -26145363 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1310 26211 100 121 14 chr12 95112167 95115938 -26141592 - L1Md_F2 LINE L1 -1152 4731 446 1 1310 259 250 165 29 chr12 95116190 95116293 -26141237 + Lx5 LINE L1 6298 6414 -636 1 1310 1448 269 130 70 chr12 95116305 95117028 -26140502 + Lx6 LINE L1 6695 7460 0 1 1310 5089 155 44 6 chr12 95118798 95119706 -26137824 - Lx2 LINE L1 -2 6995 6053 1 1310 390 306 98 53 chr12 95120568 95121292 -26136238 + L1MC3 LINE L1 4930 5686 -2099 1 1310 320 183 170 11 chr12 95121523 95121617 -26135913 + PB1D7 SINE Alu 12 120 0 1 1310 459 333 51 76 chr12 95121619 95121971 -26135559 + L1MC3 LINE L1 5897 6240 -1545 1 1310 351 0 0 0 chr12 95121971 95122010 -26135520 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1310 854 81 8 0 chr12 95122012 95122136 -26135394 + (TCTA)n Simple_repeat Simple_repeat 1 125 0 1 1310 459 333 51 76 chr12 95122136 95122215 -26135315 + L1MC3 LINE L1 6241 6320 -1465 1 1310 228 256 96 32 chr12 95122312 95122437 -26135093 + L1MC3 LINE L1 6441 6573 -1212 1 1310 232 296 0 27 chr12 95122488 95122561 -26134969 - MER65D LTR ERV1 -375 98 28 1 1310 473 71 0 14 chr12 95122738 95122809 -26134721 + (TTA)n Simple_repeat Simple_repeat 1 70 0 1 1310 431 340 19 25 chr12 95122815 95122975 -26134555 - Tigger9b DNA MER2_type -465 159 1 1 1310 219 186 0 0 chr12 95123651 95123694 -26133836 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1 1310 487 241 11 48 chr12 95123745 95123932 -26133598 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1310 443 63 0 16 chr12 95125171 95125235 -26132295 + (TTTTG)n Simple_repeat Simple_repeat 1 63 0 1 1310 1041 103 7 0 chr12 95125235 95125380 -26132150 - B1_Mus2 SINE Alu 0 147 2 1 1310 712 162 6 22 chr12 95126302 95126446 -26131084 - ORR1C1 LTR MaLR -261 133 1 1 1310 443 18 0 18 chr12 95127300 95127357 -26130173 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1 1310 285 129 46 23 chr12 95127607 95127694 -26129836 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 1 1310 357 93 0 0 chr12 95127699 95127753 -26129777 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1310 369 298 97 22 chr12 95130458 95130592 -26126938 + B4A SINE B4 6 149 -143 2 1310 357 296 139 87 chr12 95132237 95132346 -26125184 - MLT1A0 LTR MaLR -3 362 258 2 1310 632 233 39 81 chr12 95132346 95132580 -26124950 + URR1B DNA MER1_type 2 225 0 2 1310 357 296 139 87 chr12 95132580 95132814 -26124716 - MLT1A0 LTR MaLR -108 257 1 2 1310 276 77 0 0 chr12 95132970 95133009 -26124521 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1310 22 35 0 0 chr12 95133969 95133998 -26123532 + AT_rich Low_complexity Low_complexity 1 29 0 2 1310 609 263 39 17 chr12 95134215 95134393 -26123137 + B3A SINE B2 1 182 -16 2 1310 698 306 36 11 chr12 95135986 95136267 -26121263 - Lx7 LINE L1 -619 7077 6790 2 1310 529 357 112 34 chr12 95136372 95136639 -26120891 - B4A SINE B4 0 292 5 2 1310 1495 58 0 0 chr12 95136827 95137017 -26120513 - L1_Mus2 LINE L1 -748 5819 5630 2 1310 5672 82 9 1 chr12 95137017 95137775 -26119755 + L1_Mus2 LINE L1 5803 6566 0 2 1310 1572 181 87 43 chr12 95139492 95139839 -26117691 + ORR1B2 LTR MaLR 1 362 -5 2 1310 242 309 24 24 chr12 95139949 95140032 -26117498 - RMER15 LTR ERVL -40 535 453 2 1310 379 286 8 0 chr12 95140406 95140532 -26116998 + L1MD LINE L1 5315 5441 -918 2 1310 418 318 73 12 chr12 95140923 95141244 -26116286 + MLT2B4 LTR ERVL 151 541 -15 2 1310 27 0 0 0 chr12 95143003 95143030 -26114500 + AT_rich Low_complexity Low_complexity 1 27 0 2 1310 442 316 40 0 chr12 95143056 95143208 -26114322 - RSINE1 SINE B4 -6 159 2 2 1310 4050 202 141 30 chr12 95143303 95144003 -26113527 + RMER12 LTR ERVK 1 757 -565 2 1310 513 47 0 0 chr12 95144003 95144067 -26113463 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2 1310 4050 202 141 30 chr12 95144067 95144467 -26113063 + RMER12 LTR ERVK 758 1223 -99 2 1310 333 283 62 48 chr12 95144533 95144839 -26112691 - L1M5 LINE L1 -623 5617 5309 2 1310 521 32 0 126 chr12 95144846 95144866 -26112664 + polypyrimidine Low_complexity Low_complexity 107 126 0 2 1310 1312 17 0 43 chr12 95144866 95145054 -26112476 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 2 1310 521 32 0 126 chr12 95145054 95145176 -26112354 + CT-rich Low_complexity Low_complexity 2 106 0 2 1310 524 15 15 0 chr12 95145178 95145243 -26112287 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 2 1310 788 255 9 49 chr12 95145564 95145787 -26111743 + B3 SINE B2 1 214 -2 2 1310 832 368 62 50 chr12 95146015 95146279 -26111251 + Lx8 LINE L1 6549 6807 -666 2 1310 338 42 21 0 chr12 95146279 95146327 -26111203 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1310 832 368 62 50 chr12 95146327 95146760 -26110770 + Lx8 LINE L1 6808 7254 -219 2 1310 501 349 32 32 chr12 95146926 95147145 -26110385 + B4 SINE B4 11 229 -63 2 1310 396 0 0 0 chr12 95147151 95147195 -26110335 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1310 333 0 0 0 chr12 95147195 95147231 -26110299 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1310 1841 142 46 3 chr12 95147240 95147543 -26109987 + ORR1A3 LTR MaLR 3 318 -8 2 1310 36 0 0 0 chr12 95147805 95147841 -26109689 + AT_rich Low_complexity Low_complexity 1 36 0 2 1310 9137 114 14 39 chr12 95147842 95148987 -26108543 - Lx3_Mus LINE L1 -2 7007 5907 2 1310 522 0 0 0 chr12 95148987 95149045 -26108485 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 2 1310 405 0 0 0 chr12 95149045 95149089 -26108441 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 2 1310 11694 102 37 22 chr12 95149089 95150287 -26107243 - Lx3_Mus LINE L1 -1103 5906 4661 2 1310 1784 137 54 31 chr12 95150287 95150604 -26106926 + L1_Mus3 LINE L1 6313 6636 -2 2 1310 11694 101 37 22 chr12 95150604 95151245 -26106285 - Lx3_Mus LINE L1 -1226 4660 4043 2 1310 11383 126 95 14 chr12 95151242 95153772 -26103758 - Lx3_Mus LINE L1 -2698 3188 119 2 163 28694 70 6 0 chr12 95153795 95158337 -26099193 - L1Md_F2 LINE L1 -12 6570 1998 2 1311 36667 11 3 26 chr12 95158498 95164065 -26093465 + L1Md_A LINE L1 147 5586 -297 2 1311 8957 5 0 0 chr12 95164065 95165061 -26092469 + L1Md_A LINE L1 5587 6582 0 2 1311 201 74 0 0 chr12 95165073 95165100 -26092430 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1311 378 0 0 0 chr12 95165120 95165162 -26092368 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1311 27 0 0 0 chr12 95167479 95167506 -26090024 + AT_rich Low_complexity Low_complexity 1 27 0 2 1311 4461 105 8 68 chr12 95167590 95168790 -26088740 - L1Md_F2 LINE L1 -4376 1507 3 2 1311 345 265 151 55 chr12 95168842 95169114 -26088416 - L1M5 LINE L1 -1898 4248 3951 2 1311 254 316 15 146 chr12 95169159 95169250 -26088280 + Lx8 LINE L1 6552 6642 -831 2 1311 180 0 0 0 chr12 95169250 95169270 -26088260 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1311 254 316 15 146 chr12 95169270 95169315 -26088215 + Lx8 LINE L1 6643 6670 -803 2 1311 23 78 0 0 chr12 95170368 95170419 -26087111 + AT_rich Low_complexity Low_complexity 1 51 0 2 1311 327 141 39 0 chr12 95170438 95170516 -26087014 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 2 1311 434 181 0 9 chr12 95170968 95171074 -26086456 + (TA)n Simple_repeat Simple_repeat 2 106 0 2 1311 330 26 0 0 chr12 95171092 95171131 -26086399 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1311 2240 164 37 2 chr12 95171500 95171904 -26085626 + Lx3C LINE L1 6540 6957 -19 2 1311 189 107 0 0 chr12 95172184 95172212 -26085318 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1311 3129 192 48 18 chr12 95172541 95173214 -26084316 + Lx4B LINE L1 5832 6524 -534 2 1311 1455 236 77 82 chr12 95173255 95173797 -26083733 - RMER19C LTR ERVK 0 611 13 2 1311 34 42 0 0 chr12 95174082 95174130 -26083400 + AT_rich Low_complexity Low_complexity 1 48 0 2 1311 180 0 0 0 chr12 95174152 95174172 -26083358 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 1311 498 208 14 7 chr12 95174601 95174746 -26082784 + (TA)n Simple_repeat Simple_repeat 1 146 0 2 1311 344 272 158 0 chr12 95174795 95174909 -26082621 + Lx9 LINE L1 7279 7410 -234 2 1311 473 47 0 15 chr12 95174909 95174974 -26082556 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 2 1311 362 74 19 0 chr12 95174961 95175015 -26082515 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 2 1311 944 40 0 16 chr12 95175017 95175143 -26082387 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 2 1311 864 0 0 0 chr12 95176163 95176259 -26081271 + (TTC)n Simple_repeat Simple_repeat 3 98 0 2 1311 471 340 128 8 chr12 95176274 95176517 -26081013 - MTD LTR MaLR -101 318 47 2 1311 474 166 15 66 chr12 95178253 95178366 -26079164 + Lx2A1 LINE L1 5877 5978 -1030 2 1311 4154 127 30 2 chr12 95178351 95178988 -26078542 - Lx LINE L1 -101 6553 5899 2 1311 23 0 0 0 chr12 95179379 95179402 -26078128 + AT_rich Low_complexity Low_complexity 1 23 0 2 1311 396 0 0 0 chr12 95179405 95179449 -26078081 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1311 29 47 0 0 chr12 95179624 95179667 -26077863 + AT_rich Low_complexity Low_complexity 1 43 0 2 1311 593 276 64 37 chr12 95180446 95180664 -26076866 - RMER15 LTR ERVL -5 570 347 2 1311 1705 198 44 9 chr12 95181018 95181359 -26076171 - Lx5 LINE L1 -571 6479 6127 2 1311 1976 296 44 13 chr12 95181760 95181988 -26075542 + Lx6 LINE L1 6652 6898 -562 2 1311 522 0 0 0 chr12 95181988 95182046 -26075484 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1311 312 27 0 0 chr12 95182046 95182082 -26075448 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1311 1976 296 44 13 chr12 95182082 95182469 -26075061 + Lx6 LINE L1 6899 7286 -174 2 1311 23 33 0 0 chr12 95183350 95183380 -26074150 + AT_rich Low_complexity Low_complexity 1 30 0 2 1311 225 320 98 30 chr12 95183529 95183732 -26073798 + Lx8 LINE L1 7252 7468 -5 2 1311 22 0 0 0 chr12 95183829 95183851 -26073679 + AT_rich Low_complexity Low_complexity 1 22 0 2 1311 436 133 35 0 chr12 95184619 95184732 -26072798 + (CAGA)n Simple_repeat Simple_repeat 4 120 0 2 1311 333 47 0 0 chr12 95185311 95185354 -26072176 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 2 1311 289 365 37 0 chr12 95185943 95186050 -26071480 + RSINE1 SINE B4 54 164 -1 2 1311 234 0 0 0 chr12 95186090 95186116 -26071414 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 2 1311 27689 84 10 6 chr12 95187390 95191808 -26065722 + L1Md_F LINE L1 443 4880 -1003 2 1311 2401 83 24 6 chr12 95191808 95192148 -26065382 + IAPEY2_LTR LTR ERVK 8 353 -4 2 1311 340 315 20 40 chr12 95192159 95192308 -26065222 - Lx8 LINE L1 -581 6892 6747 2 1311 23 54 0 0 chr12 95192842 95192879 -26064651 + AT_rich Low_complexity Low_complexity 1 37 0 2 1311 1059 107 0 0 chr12 95194155 95194324 -26063206 + (CA)n Simple_repeat Simple_repeat 2 170 0 2 1311 840 85 0 0 chr12 95194936 95195054 -26062476 + (TG)n Simple_repeat Simple_repeat 2 119 0 2 1311 367 355 21 42 chr12 95195061 95195205 -26062325 - B4A SINE B4 -18 274 134 2 1311 445 108 12 12 chr12 95195442 95195526 -26062004 + Lx LINE L1 6566 6649 -5 2 1311 225 139 0 0 chr12 95195530 95195573 -26061957 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1311 486 248 43 0 chr12 95195988 95196105 -26061425 - ORR1D1 LTR MaLR -4 370 249 2 1311 560 332 29 5 chr12 95196298 95196507 -26061023 + B3 SINE B2 1 214 -2 2 1311 23 33 0 0 chr12 95196925 95196955 -26060575 + AT_rich Low_complexity Low_complexity 1 30 0 2 1311 695 258 83 37 chr12 95199209 95199426 -26058104 - MTD LTR MaLR -16 403 177 2 1311 9197 75 2 5 chr12 95199429 95201332 -26056198 - L1Md_F2 LINE L1 -10 6572 4674 2 1311 232 91 45 0 chr12 95202402 95202446 -26055084 + (TCTCC)n Simple_repeat Simple_repeat 1 46 0 2 1311 2503 69 27 0 chr12 95202808 95203141 -26054389 + ORR1A1 LTR MaLR 1 342 -4 2 1311 1311 97 6 0 chr12 95203274 95203449 -26054081 - B2_Mm1t SINE B2 -16 177 2 2 1311 1699 71 8 4 chr12 95203759 95203998 -26053532 - L1_Mus2 LINE L1 0 6566 6327 2 1311 1638 73 5 5 chr12 95203998 95204218 -26053312 + L1_Mus2 LINE L1 6159 6378 -188 2 1311 225 83 0 0 chr12 95205448 95205484 -26052046 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 2 1311 958 97 11 0 chr12 95205484 95205659 -26051871 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 2 1311 321 187 0 0 chr12 95205700 95205775 -26051755 + CT-rich Low_complexity Low_complexity 2 76 0 2 1311 1777 142 21 3 chr12 95206360 95206642 -26050888 - Lx3A LINE L1 -2 6979 6693 2 1311 306 284 88 0 chr12 95206676 95206824 -26050706 + L1MC LINE L1 4454 4614 -1532 2 1311 308 282 132 11 chr12 95206974 95207254 -26050276 + L1MCa LINE L1 2021 2334 -4174 2 1311 27 49 0 0 chr12 95207293 95207334 -26050196 + AT_rich Low_complexity Low_complexity 1 41 0 3 1311 21 0 0 0 chr12 95208363 95208384 -26049146 + AT_rich Low_complexity Low_complexity 1 21 0 3 1311 38 22 0 0 chr12 95208692 95208737 -26048793 + AT_rich Low_complexity Low_complexity 1 45 0 3 1311 7121 80 0 0 chr12 95208742 95209662 -26047868 - L1_Mus2 LINE L1 0 6566 5647 3 1311 3460 83 19 2 chr12 95209662 95210144 -26047386 - Lx3_Mus LINE L1 -2 7007 6518 3 1311 25 0 0 0 chr12 95210652 95210677 -26046853 + AT_rich Low_complexity Low_complexity 1 25 0 3 1311 22 0 0 0 chr12 95211061 95211083 -26046447 + AT_rich Low_complexity Low_complexity 1 22 0 3 1311 357 24 0 0 chr12 95211459 95211501 -26046029 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1311 5048 111 46 0 chr12 95211654 95212463 -26045067 - Lx3A LINE L1 -7 6974 6129 3 1311 204 40 0 0 chr12 95212467 95212492 -26045038 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1311 21 0 0 0 chr12 95212494 95212515 -26045015 + AT_rich Low_complexity Low_complexity 1 21 0 3 1311 606 362 49 64 chr12 95212548 95213201 -26044329 - Lx8 LINE L1 -63 7410 6768 3 1311 301 267 24 57 chr12 95213237 95213360 -26044170 + L1_Mur3 LINE L1 5341 5459 -421 3 1311 23 0 0 0 chr12 95213535 95213558 -26043972 + AT_rich Low_complexity Low_complexity 1 23 0 3 1311 350 368 70 43 chr12 95213698 95214037 -26043493 - MLT1A1 LTR MaLR -1 407 1 3 1311 24 53 0 0 chr12 95215006 95215044 -26042486 + AT_rich Low_complexity Low_complexity 1 38 0 3 1311 474 18 0 0 chr12 95215157 95215212 -26042318 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 3 1311 1269 149 84 0 chr12 95216490 95216705 -26040825 + RMER19B LTR ERVK 653 885 -17 3 1311 1081 74 0 0 chr12 95216705 95216840 -26040690 + B1_Mus1 SINE Alu 1 135 -13 3 1311 330 26 0 0 chr12 95216840 95216879 -26040651 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 3 1311 558 214 109 91 chr12 95216879 95216895 -26040635 + RMER19C LTR ERVK 585 599 -12 3 1311 3171 194 74 7 chr12 95216906 95217581 -26039949 + Lx2B LINE L1 6261 6980 -20 3 1311 5003 248 39 15 chr12 95217606 95219256 -26038274 + Lx5 LINE L1 5348 7045 -5 3 1311 24 0 0 0 chr12 95219550 95219574 -26037956 + AT_rich Low_complexity Low_complexity 1 24 0 3 1311 189 341 102 23 chr12 95220045 95220178 -26037352 + MIRm SINE MIR 48 193 -83 3 1311 254 333 103 27 chr12 95220233 95220495 -26037035 - B4A SINE B4 -8 284 3 3 1311 8659 136 3 3 chr12 95221241 95222647 -26034883 + L1_Mus3 LINE L1 3384 4789 -1094 3 1311 7278 105 16 0 chr12 95222649 95223792 -26033738 + L1_Mus3 LINE L1 5478 6638 0 3 1311 33 43 0 0 chr12 95223792 95223839 -26033691 + AT_rich Low_complexity Low_complexity 1 47 0 3 1311 462 340 6 66 chr12 95224219 95224385 -26033145 - B3A SINE B2 -25 191 36 3 1311 204 270 0 13 chr12 95224613 95224688 -26032842 + A-rich Low_complexity Low_complexity 5 78 0 3 1311 5446 261 52 33 chr12 95224739 95225369 -26032161 - Lx7 LINE L1 -402 7294 6675 3 1311 3197 46 8 0 chr12 95225369 95225760 -26031770 + MTA_Mm LTR MaLR 3 396 0 3 1311 5446 261 52 33 chr12 95225760 95226796 -26030734 - Lx7 LINE L1 -1022 6674 5596 3 1311 438 332 133 23 chr12 95226924 95227399 -26030131 - L1M5 LINE L1 -1201 4945 4419 3 1311 525 291 13 74 chr12 95227399 95227629 -26029901 - B3 SINE B2 0 216 1 3 1311 427 33 16 16 chr12 95227635 95227697 -26029833 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 1311 22 0 0 0 chr12 95227711 95227733 -26029797 + AT_rich Low_complexity Low_complexity 1 22 0 3 1311 403 323 37 8 chr12 95227965 95228099 -26029431 + B1_Mur1 SINE Alu 1 138 -11 3 1311 348 348 55 47 chr12 95228349 95228584 -26028946 - L1M5 LINE L1 -2320 3826 3590 3 1311 975 47 0 0 chr12 95229038 95229167 -26028363 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 1311 23 54 0 0 chr12 95229431 95229468 -26028062 + AT_rich Low_complexity Low_complexity 1 37 0 3 1311 900 237 20 0 chr12 95230331 95230529 -26027001 - B3 SINE B2 -13 203 2 3 1311 1256 264 50 15 chr12 95231212 95231550 -26025980 - Lx6 LINE L1 -26 7434 7085 3 1311 252 330 24 65 chr12 95232621 95232744 -26024786 + B1F SINE Alu 1 118 -31 3 1311 33 43 0 0 chr12 95232863 95232910 -26024620 + AT_rich Low_complexity Low_complexity 1 47 0 3 1311 423 0 0 0 chr12 95234649 95234696 -26022834 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 3 1311 417 20 0 0 chr12 95234714 95234764 -26022766 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1311 511 220 8 68 chr12 95235182 95235299 -26022231 + B1_Mur3 SINE Alu 2 111 -38 3 1311 354 289 67 45 chr12 95235299 95235316 -26022214 + B4 SINE B4 87 223 -69 3 1311 1395 148 70 0 chr12 95235372 95235503 -26022027 + Lx LINE L1 6388 6518 -136 3 1311 255 61 0 0 chr12 95235503 95235536 -26021994 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 3 1311 1395 148 70 0 chr12 95235536 95235647 -26021883 + Lx LINE L1 6519 6645 -9 3 1311 332 326 43 0 chr12 95236256 95236397 -26021133 + Lx6 LINE L1 7284 7430 -30 3 1311 324 0 0 0 chr12 95236458 95236494 -26021036 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1311 480 329 33 0 chr12 95236612 95236677 -26020853 + ID SINE ID 12 81 -143 3 1311 211 333 69 59 chr12 95236677 95236779 -26020751 + B1_Mm SINE Alu 1 103 -44 3 1311 183 245 19 58 chr12 95237181 95237233 -26020297 + L2 LINE L2 2881 2930 -489 3 1311 26 0 0 0 chr12 95237300 95237326 -26020204 + AT_rich Low_complexity Low_complexity 1 26 0 3 1311 885 93 0 0 chr12 95237326 95237455 -26020075 - L1_Mus1 LINE L1 -1 6566 6438 3 1311 906 286 111 35 chr12 95237474 95237844 -26019686 + MTD LTR MaLR 8 405 -14 3 1311 186 206 0 0 chr12 95238036 95238099 -26019431 + CT-rich Low_complexity Low_complexity 2 64 0 3 1311 203 133 0 0 chr12 95238133 95238163 -26019367 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1311 261 57 0 0 chr12 95238271 95238306 -26019224 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1311 279 54 0 0 chr12 95238417 95238454 -26019076 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1311 258 32 0 0 chr12 95238537 95238568 -26018962 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1311 309 109 0 0 chr12 95238647 95238693 -26018837 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1311 22 35 0 0 chr12 95239383 95239412 -26018118 + AT_rich Low_complexity Low_complexity 1 29 0 3 1311 313 325 0 6 chr12 95239431 95239589 -26017941 + CT-rich Low_complexity Low_complexity 2 158 0 3 1311 2496 212 101 6 chr12 95240151 95240776 -26016754 - Lx3C LINE L1 -11 6989 6304 3 1311 2561 160 48 2 chr12 95240776 95241259 -26016271 - Lx3C LINE L1 -794 6182 5678 3 1311 436 360 45 41 chr12 95241292 95241512 -26016018 - B4 SINE B4 -69 223 3 3 1311 351 0 0 0 chr12 95242300 95242339 -26015191 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1311 896 140 75 43 chr12 95243741 95243928 -26013602 - B2_Mm2 SINE B2 -1 194 2 3 1311 313 39 19 19 chr12 95244421 95244473 -26013057 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 3 1311 4144 166 20 0 chr12 95244624 95244729 -26012801 + Lx3C LINE L1 5167 5271 -615 3 1311 222 37 0 0 chr12 95244729 95244756 -26012774 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1311 6989 175 20 16 chr12 95244756 95246164 -26011366 + Lx3C LINE L1 5272 6678 -298 3 1311 3225 145 6 8 chr12 95246164 95246691 -26010839 - Lx LINE L1 0 6654 6129 3 1311 6989 182 20 27 chr12 95246691 95246987 -26010543 + Lx3C LINE L1 6679 6976 0 3 1311 320 274 71 62 chr12 95248300 95248410 -26009120 + B4A SINE B4 119 229 -63 3 1311 719 306 38 0 chr12 95248410 95248593 -26008937 + B3 SINE B2 1 190 -26 3 1311 1247 183 32 0 chr12 95249058 95249304 -26008226 + Lx2A1 LINE L1 6752 7005 -3 3 1311 288 0 0 0 chr12 95250715 95250747 -26006783 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1311 968 139 0 6 chr12 95250971 95251144 -26006386 + (TTC)n Simple_repeat Simple_repeat 2 173 0 3 1311 3182 43 8 0 chr12 95251203 95251595 -26005935 - L1Md_F2 LINE L1 -12 6570 6176 3 1311 201 74 0 0 chr12 95252714 95252741 -26004789 + (TATAA)n Simple_repeat Simple_repeat 2 28 0 3 1311 295 404 0 0 chr12 95255144 95255238 -26002292 - B4A SINE B4 -180 112 19 3 1311 475 226 0 14 chr12 95255933 95256072 -26001458 + Lx7 LINE L1 7555 7691 -5 3 1311 243 0 0 0 chr12 95256564 95256591 -26000939 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1311 297 75 0 0 chr12 95256622 95256662 -26000868 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1311 812 242 95 36 chr12 95256663 95256980 -26000550 - MTD LTR MaLR -54 346 6 3 1311 19147 61 1 17 chr12 95257639 95260902 -25996628 - L1Md_F2 LINE L1 0 6582 3373 3 1311 1354 201 0 21 chr12 95260902 95261192 -25996338 - L1VL1 LINE L1 -6136 286 3 3 1311 4341 71 4 0 chr12 95261195 95261755 -25995775 - L1Md_F2 LINE L1 -22 6560 5999 3 1311 1103 78 0 25 chr12 95261763 95261921 -25995609 - L1_Mm LINE L1 -2357 3526 3373 3 1311 432 229 0 0 chr12 95261921 95262017 -25995513 - L1VL1 LINE L1 -6136 286 191 3 1311 1748 60 0 0 chr12 95262015 95262231 -25995299 + L1Md_F2 LINE L1 6133 6348 -234 3 1311 271 61 0 0 chr12 95262230 95262263 -25995267 + L1Md_F3 LINE L1 5978 6010 -574 3 1311 465 34 0 0 chr12 95263428 95263487 -25994043 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1311 978 304 52 40 chr12 95263607 95264125 -25993405 + Lx9 LINE L1 6636 7159 -485 3 1311 531 186 60 34 chr12 95264173 95264290 -25993240 - RLTR20B3 LTR ERVK -14 563 444 3 1311 436 294 79 0 chr12 95264371 95264497 -25993033 + B1_Mur1 SINE Alu 13 148 -1 3 1311 437 0 19 0 chr12 95264769 95264822 -25992708 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1311 532 215 14 14 chr12 95265258 95265404 -25992126 - Lx7 LINE L1 -1 7695 7550 3 1311 193 29 59 0 chr12 95265406 95265440 -25992090 + (TATAA)n Simple_repeat Simple_repeat 2 37 0 3 1311 489 17 0 0 chr12 95266314 95266372 -25991158 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1311 1151 321 34 26 chr12 95266477 95267005 -25990525 - Lx9 LINE L1 -492 7152 6621 4 1311 23 0 0 0 chr12 95267855 95267878 -25989652 + AT_rich Low_complexity Low_complexity 1 23 0 4 1311 267 287 60 69 chr12 95268248 95268364 -25989166 + B3A SINE B2 6 120 -78 4 1311 387 354 8 0 chr12 95268506 95268636 -25988894 + B3A SINE B2 63 193 -5 4 1311 25 0 0 0 chr12 95269975 95270000 -25987530 + AT_rich Low_complexity Low_complexity 1 25 0 4 1311 258 143 0 0 chr12 95270086 95270135 -25987395 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1311 540 0 0 0 chr12 95270222 95270282 -25987248 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1311 24 53 0 0 chr12 95270671 95270709 -25986821 + AT_rich Low_complexity Low_complexity 1 38 0 4 1311 381 376 58 70 chr12 95270905 95271148 -25986382 + 7SK RNA RNA 17 256 -75 4 1311 589 319 21 5 chr12 95271967 95272153 -25985377 + B3 SINE B2 27 215 -1 4 1311 313 319 132 78 chr12 95272810 95273014 -25984516 - LTR75 LTR ERVL -82 480 266 4 1311 704 289 10 49 chr12 95273282 95273486 -25984044 + B3A SINE B2 3 198 0 4 1311 1083 97 0 0 chr12 95273524 95273668 -25983862 - B1_Mus1 SINE Alu -3 145 2 4 1311 186 71 0 0 chr12 95273748 95273776 -25983754 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1311 324 0 0 0 chr12 95273833 95273869 -25983661 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1311 473 294 40 25 chr12 95273876 95274122 -25983408 + Lx7 LINE L1 5613 5864 -718 4 1311 218 81 27 0 chr12 95274207 95274244 -25983286 + (TATG)n Simple_repeat Simple_repeat 2 39 0 4 1311 2845 16 2 151 chr12 95274590 95275021 -25982509 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1311 38513 24 9 3 chr12 95275021 95281493 -25976037 - IAPEz-int LTR ERVK 0 6481 3 4 1311 2878 16 2 151 chr12 95281495 95281926 -25975604 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1311 441 289 19 114 chr12 95282250 95282461 -25975069 + B4A SINE B4 102 292 0 4 1311 192 135 0 0 chr12 95283067 95283104 -25974426 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1311 242 239 80 27 chr12 95283755 95283867 -25973663 - Lx5 LINE L1 0 7050 6933 4 1311 207 162 0 0 chr12 95284932 95284969 -25972561 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1311 214 325 26 13 chr12 95285331 95285409 -25972121 + RSINE1 SINE B4 12 90 -75 4 1311 210 192 0 71 chr12 95285441 95285497 -25972033 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 4 1311 274 412 47 19 chr12 95285605 95285820 -25971710 - B4A SINE B4 -8 284 64 4 1311 423 132 0 0 chr12 95286566 95286634 -25970896 + (CAA)n Simple_repeat Simple_repeat 2 69 0 4 1311 398 309 37 37 chr12 95287099 95287314 -25970216 - Lx8 LINE L1 -28 7445 7231 4 1311 22 0 0 0 chr12 95287357 95287379 -25970151 + AT_rich Low_complexity Low_complexity 1 22 0 4 1311 738 329 38 31 chr12 95287538 95287958 -25969572 - Lx8 LINE L1 -234 7239 6817 4 1311 664 200 31 0 chr12 95288955 95289085 -25968445 - B1_Mur4 SINE Alu -16 134 1 4 1312 718 177 27 60 chr12 95289744 95289894 -25967636 + B1_Mur4 SINE Alu 6 150 0 4 1312 222 128 0 0 chr12 95290201 95290240 -25967290 + (CATA)n Simple_repeat Simple_repeat 4 42 0 4 1312 7755 154 29 8 chr12 95290672 95291485 -25966045 + Lx4A LINE L1 5614 6449 -609 4 1312 1456 187 63 30 chr12 95291485 95291882 -25965648 - RMER17C LTR ERVK 0 410 1 4 1312 7755 154 29 8 chr12 95291882 95292478 -25965052 + Lx4A LINE L1 6450 7053 -5 4 1312 274 45 0 43 chr12 95292478 95292524 -25965006 + (TAA)n Simple_repeat Simple_repeat 2 45 0 4 1312 228 342 34 67 chr12 95292633 95292752 -25964778 + Tigger7 DNA MER2_type 213 327 -2164 4 1312 289 270 23 23 chr12 95292893 95293022 -25964508 + Tigger7 DNA MER2_type 2287 2415 -76 4 1312 1022 205 169 44 chr12 95293197 95293493 -25964037 + RMER19B LTR ERVK 309 641 -261 4 1312 596 201 128 34 chr12 95293490 95293639 -25963891 + RMER19C LTR ERVK 449 611 0 4 1312 335 273 68 16 chr12 95293639 95293829 -25963701 - L1M5 LINE L1 -3041 3105 2906 4 1312 2435 49 3 0 chr12 95294548 95294853 -25962677 - L1Md_F2 LINE L1 -12 6570 6265 4 1312 906 222 49 16 chr12 95295443 95295686 -25961844 - Lx9 LINE L1 -158 7486 7236 4 1312 25 0 0 0 chr12 95296651 95296676 -25960854 + AT_rich Low_complexity Low_complexity 1 25 0 4 1312 288 0 0 0 chr12 95298187 95298219 -25959311 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1312 2506 101 81 16 chr12 95299536 95299918 -25957612 + MTB_Mm LTR MaLR 1 407 0 4 1312 260 395 32 37 chr12 95299921 95300108 -25957422 + ID_B1 SINE B4 37 222 -2 4 1312 2474 285 56 6 chr12 95300343 95301151 -25956379 - Lx5 LINE L1 -8 7042 6195 4 1312 2643 224 33 51 chr12 95301288 95302147 -25955383 - L1_Mur2 LINE L1 -3546 2331 1489 4 1312 653 258 29 48 chr12 95302224 95302307 -25955223 - L1_Mur2 LINE L1 -6419 1309 1236 4 1312 520 103 0 0 chr12 95302307 95302385 -25955145 - L1_Mus2 LINE L1 0 6566 6489 4 1312 850 208 6 65 chr12 95302385 95302664 -25954866 - L1_Mur2 LINE L1 -6493 1235 907 4 1312 608 48 0 12 chr12 95303173 95303258 -25954272 + (CAAAA)n Simple_repeat Simple_repeat 2 85 0 4 1312 1077 102 0 0 chr12 95304174 95304331 -25953199 + (TTTTC)n Simple_repeat Simple_repeat 4 160 0 4 1312 497 16 16 0 chr12 95305367 95305429 -25952101 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 4 1312 938 87 7 0 chr12 95305430 95305568 -25951962 + (TC)n Simple_repeat Simple_repeat 2 140 0 4 1312 268 276 0 13 chr12 95305684 95305761 -25951769 + CT-rich Low_complexity Low_complexity 3 78 0 4 1312 3139 209 3 15 chr12 95305862 95306478 -25951052 + Lx2B LINE L1 6392 7000 0 4 1312 570 301 109 51 chr12 95306495 95306622 -25950908 - ORR1D1 LTR MaLR 0 374 244 4 1312 531 0 0 0 chr12 95306622 95306681 -25950849 + (CAGG)n Simple_repeat Simple_repeat 4 62 0 4 1312 570 301 109 51 chr12 95306681 95306903 -25950627 - ORR1D1 LTR MaLR -131 243 7 4 1312 1595 266 58 37 chr12 95308140 95308792 -25948738 + Lx9 LINE L1 6967 7632 -12 4 1312 21 57 0 0 chr12 95308950 95308985 -25948545 + AT_rich Low_complexity Low_complexity 1 35 0 4 1312 2105 194 7 33 chr12 95309971 95310423 -25947107 - RMER6A LTR ERVK 0 756 317 4 1312 198 0 0 0 chr12 95310423 95310445 -25947085 + (TCC)n Simple_repeat Simple_repeat 2 23 0 4 1312 3156 77 29 47 chr12 95310729 95311220 -25946310 - RLTR45 LTR ERVK 0 482 1 4 1312 429 321 105 20 chr12 95311377 95311577 -25945953 + RMER15 LTR ERVL 356 572 -3 4 1312 311 0 0 0 chr12 95311912 95311948 -25945582 - ORR1A3 LTR MaLR 0 326 291 4 1312 5075 59 9 3 chr12 95311941 95312606 -25944924 - ORR1A3-int LTR MaLR -265 1527 859 4 1312 7716 49 0 1 chr12 95312610 95313729 -25943801 - L1Md_F3 LINE L1 -10 6574 5457 4 1312 1039 188 51 4 chr12 95313730 95314003 -25943527 - Lx2B LINE L1 -790 6210 5925 4 1312 359 329 136 52 chr12 95314705 95315050 -25942480 + MTEa LTR MaLR 4 377 -2 4 1312 1132 48 7 33 chr12 95315327 95315477 -25942053 - B1_Mm SINE Alu 0 147 2 4 1312 492 226 57 0 chr12 95315684 95315790 -25941740 + MT2B LTR ERVL 1 112 -489 4 1312 800 194 32 6 chr12 95315784 95315940 -25941590 + ORR1B1 LTR MaLR 191 350 -44 4 1312 2526 148 139 7 chr12 95315943 95316432 -25941098 - Lx3_Mus LINE L1 -566 6443 5883 4 1312 5734 69 22 25 chr12 95316432 95317236 -25940294 - L1Md_F2 LINE L1 -10 6572 5771 4 1312 2526 148 139 7 chr12 95317236 95317291 -25940239 - Lx3_Mus LINE L1 -1127 5882 5828 4 1312 291 54 0 0 chr12 95317291 95317328 -25940202 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1312 7462 36 0 0 chr12 95317365 95318292 -25939238 - L1Md_T LINE L1 -2 6580 5654 4 1312 10069 26 0 0 chr12 95318291 95319534 -25937996 + L1_Mm LINE L1 3713 4955 -928 4 1312 615 59 0 0 chr12 95319527 95319612 -25937918 - Lx3_Mus LINE L1 -1128 5845 5761 4 1312 362 216 97 26 chr12 95319989 95320103 -25937427 + MTEa LTR MaLR 258 379 0 4 1312 440 327 67 53 chr12 95320359 95320643 -25936887 - MER2 DNA MER2_type -31 314 27 4 1312 1784 206 9 0 chr12 95321519 95321845 -25935685 - ORR1B2 LTR MaLR -8 359 31 4 1312 447 406 50 25 chr12 95322368 95322689 -25934841 + LTR16E2 LTR ERVL 238 566 -2 4 1312 5874 52 1 3 chr12 95324428 95325159 -25932371 - L1Md_F2 LINE L1 -11 6571 5842 4 1312 219 140 0 0 chr12 95325237 95325287 -25932243 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1312 285 51 0 0 chr12 95325869 95325908 -25931622 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 4 1312 35685 44 2 5 chr12 95327137 95333268 -25924262 - L1Md_T LINE L1 0 6585 277 4 1312 276 121 17 33 chr12 95333301 95333361 -25924169 - RLTR13D1 LTR ERVK -156 650 592 4 1312 502 227 6 36 chr12 95333355 95333525 -25924005 - RMER19C LTR ERVK -73 538 339 4 1312 549 106 75 0 chr12 95333525 95333619 -25923911 - L1Md_A LINE L1 -6416 308 208 4 1312 1129 88 7 0 chr12 95333654 95333801 -25923729 + B1_Mus1 SINE Alu 1 148 0 4 1312 1615 31 5 0 chr12 95334422 95334614 -25922916 - B2_Mm1t SINE B2 0 193 1 4 1312 344 348 14 21 chr12 95335172 95335313 -25922217 - ORR1E LTR MaLR -219 140 1 4 1312 183 302 19 94 chr12 95335726 95335832 -25921698 + L2 LINE L2 2415 2512 -907 4 1312 730 207 11 0 chr12 95335910 95336084 -25921446 + GA-rich Low_complexity Low_complexity 2 177 0 4 1312 229 366 43 73 chr12 95336309 95336542 -25920988 + RMER2 LTR ERV1 330 555 -12 4 1312 1426 295 146 47 chr12 95337011 95337703 -25919827 - Lx8 LINE L1 -179 7294 6533 4 1312 859 16 32 16 chr12 95337703 95337829 -25919701 + (GGA)n Simple_repeat Simple_repeat 3 130 0 4 1312 1426 295 146 47 chr12 95337829 95337947 -25919583 - Lx8 LINE L1 -941 6532 6404 4 1312 1820 186 181 84 chr12 95337975 95338604 -25918926 + RMER6C LTR ERVK 1 690 0 4 1312 2860 249 54 125 chr12 95339391 95340426 -25917104 + RMER1B Other Other 51 1012 -54 4 1312 1870 124 47 7 chr12 95340682 95340981 -25916549 + Lx3_Mus LINE L1 6691 7001 -8 4 1312 186 167 0 0 chr12 95341004 95341040 -25916490 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 1312 472 336 92 68 chr12 95342117 95342398 -25915132 + B4 SINE B4 1 288 -4 4 1312 1216 48 0 0 chr12 95342675 95342822 -25914708 + B1_Mus2 SINE Alu 1 147 0 4 1312 422 348 29 26 chr12 95342862 95343058 -25914472 - B3A SINE B2 -17 199 1 4 1312 25 0 0 0 chr12 95343549 95343574 -25913956 + AT_rich Low_complexity Low_complexity 1 25 0 4 1312 231 352 41 8 chr12 95344687 95344810 -25912720 + MLT1C LTR MaLR 9 135 -332 5 1312 398 223 0 3 chr12 95345395 95345655 -25911875 + (TA)n Simple_repeat Simple_repeat 1 259 0 5 1312 694 255 34 68 chr12 95346269 95346475 -25911055 - B3 SINE B2 -17 199 1 5 1312 1343 278 126 24 chr12 95347928 95348396 -25909134 + Lx6 LINE L1 6928 7443 -17 5 1312 259 314 136 51 chr12 95348710 95348945 -25908585 - Lx8 LINE L1 -40 7433 7179 5 1312 700 215 34 86 chr12 95348981 95349215 -25908315 + L1_Mur3 LINE L1 5192 5413 -467 5 1312 3538 274 24 55 chr12 95349214 95350283 -25907247 + Lx7 LINE L1 6122 7152 -544 5 1312 293 0 27 0 chr12 95350283 95350320 -25907210 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1312 3538 274 24 55 chr12 95350320 95350416 -25907114 + Lx7 LINE L1 7153 7251 -445 5 1312 6368 117 78 2 chr12 95350437 95351447 -25906083 - Lx LINE L1 0 6654 5564 5 1312 378 254 34 42 chr12 95351416 95351535 -25905995 + Lx7 LINE L1 7250 7367 -329 5 1312 33 0 0 0 chr12 95351536 95351569 -25905961 + AT_rich Low_complexity Low_complexity 1 33 0 5 1312 1205 227 57 7 chr12 95351589 95351886 -25905644 + Lx7 LINE L1 7370 7681 -15 5 1312 266 338 73 64 chr12 95352063 95352297 -25905233 + MLT1A1 LTR MaLR 3 238 -170 5 1312 1114 69 7 0 chr12 95352472 95352616 -25904914 - B1_Mm SINE Alu -2 145 1 5 1312 649 359 17 0 chr12 95352648 95352829 -25904701 - B4A SINE B4 -108 184 1 5 1312 331 369 91 21 chr12 95354061 95354435 -25903095 + MLT1C LTR MaLR 68 467 0 5 1312 414 57 0 0 chr12 95354862 95354915 -25902615 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1312 2961 243 84 13 chr12 95355278 95355995 -25901535 + Lx5 LINE L1 6280 7047 -3 5 1312 2703 106 9 24 chr12 95357676 95358100 -25899430 + L1_Mus3 LINE L1 6214 6631 -7 5 1312 255 232 18 0 chr12 95358617 95358673 -25898857 - RSINE1 SINE B4 -106 59 3 5 1312 934 323 83 6 chr12 95359161 95359497 -25898033 + MTD LTR MaLR 46 407 -12 5 1312 481 325 68 71 chr12 95360853 95361459 -25896071 + L1MA7 LINE L1 5335 5938 -353 5 1312 31192 84 19 1 chr12 95361700 95363256 -25894274 + L1Md_F2 LINE L1 389 1970 -3913 5 1312 351 0 0 0 chr12 95363256 95363295 -25894235 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1312 31192 83 8 2 chr12 95363295 95366883 -25890647 + L1Md_F2 LINE L1 1971 5585 -298 5 1312 7785 53 10 2 chr12 95366884 95367860 -25889670 + L1Md_F2 LINE L1 5587 6570 -12 5 1312 666 266 14 56 chr12 95368121 95368336 -25889194 - B3 SINE B2 -10 206 1 5 1312 21 0 0 0 chr12 95368875 95368896 -25888634 + AT_rich Low_complexity Low_complexity 1 21 0 5 1312 1045 283 50 4 chr12 95369242 95369519 -25888011 - MTD LTR MaLR -14 405 116 5 1312 987 48 0 0 chr12 95369582 95369707 -25887823 + (GAAA)n Simple_repeat Simple_repeat 1 125 0 5 1312 857 88 292 0 chr12 95369821 95369968 -25887562 + B2_Mm2 SINE B2 2 191 -4 5 1312 405 0 0 0 chr12 95370309 95370354 -25887176 + (TTA)n Simple_repeat Simple_repeat 3 47 0 5 1312 25 0 0 0 chr12 95370758 95370783 -25886747 + AT_rich Low_complexity Low_complexity 1 25 0 5 1312 23 92 0 0 chr12 95371855 95371920 -25885610 + AT_rich Low_complexity Low_complexity 1 65 0 5 1312 253 228 126 10 chr12 95372086 95372233 -25885297 - L1M4 LINE L1 -668 5516 5346 5 1312 22 0 0 0 chr12 95372574 95372596 -25884934 + AT_rich Low_complexity Low_complexity 1 22 0 5 1312 270 0 0 0 chr12 95373071 95373101 -25884429 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1312 608 59 12 0 chr12 95374029 95374114 -25883416 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 5 1312 1543 172 21 65 chr12 95374479 95374815 -25882715 + Lx2 LINE L1 6677 6997 0 5 1312 3271 175 9 2 chr12 95374902 95375457 -25882073 + RLTR21 LTR ERVK 1 559 -1013 5 1312 288 299 21 0 chr12 95375457 95375554 -25881976 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 1312 23 33 0 0 chr12 95375984 95376014 -25881516 + AT_rich Low_complexity Low_complexity 1 30 0 5 1312 26 0 0 0 chr12 95376716 95376742 -25880788 + AT_rich Low_complexity Low_complexity 1 26 0 5 1312 235 149 0 75 chr12 95377254 95377334 -25880196 + (TA)n Simple_repeat Simple_repeat 1 74 0 5 1312 432 0 0 0 chr12 95377526 95377574 -25879956 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1312 459 148 0 0 chr12 95377632 95377720 -25879810 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1312 281 314 29 14 chr12 95378220 95378359 -25879171 + B1F1 SINE Alu 1 141 -8 5 1312 766 103 8 16 chr12 95378834 95378962 -25878568 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 5 1312 337 314 29 22 chr12 95382954 95383091 -25874439 + MER63B DNA AcHobo 299 436 0 5 1312 245 148 33 0 chr12 95384136 95384197 -25873333 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 5 1312 23 0 0 0 chr12 95384403 95384426 -25873104 + AT_rich Low_complexity Low_complexity 1 23 0 5 1312 4172 8 0 2 chr12 95384438 95384909 -25872621 - L1Md_A LINE L1 0 6582 6113 5 1312 233 296 25 25 chr12 95384925 95385043 -25872487 - Lx6 LINE L1 -169 7291 7174 5 1312 3140 59 34 14 chr12 95385743 95386156 -25871374 - L1_Mus1 LINE L1 -4 6563 6143 5 1312 260 103 0 0 chr12 95386157 95386196 -25871334 + L1_Mus1 LINE L1 6079 6117 -450 5 1312 22 0 0 0 chr12 95386217 95386239 -25871291 + AT_rich Low_complexity Low_complexity 1 22 0 5 1312 390 321 0 18 chr12 95386315 95386426 -25871104 - B3A SINE B2 -69 129 21 5 1312 815 261 29 96 chr12 95388912 95389147 -25868383 - RMER17C LTR ERVK -23 387 169 5 1312 1169 35 28 22 chr12 95389147 95389325 -25868205 + (GGGAA)n Simple_repeat Simple_repeat 1 179 0 5 1312 815 261 29 96 chr12 95389325 95389504 -25868026 - RMER17C LTR ERVK -242 168 1 5 1312 309 26 0 0 chr12 95390224 95390262 -25867268 + (CATA)n Simple_repeat Simple_repeat 3 40 0 5 1312 25 65 0 0 chr12 95391014 95391060 -25866470 + AT_rich Low_complexity Low_complexity 1 46 0 5 1312 811 359 56 34 chr12 95391542 95391989 -25865541 + MLT1C LTR MaLR 11 467 0 5 1312 238 306 0 59 chr12 95392364 95392482 -25865048 + CT-rich Low_complexity Low_complexity 2 112 0 5 1312 243 0 0 0 chr12 95392605 95392632 -25864898 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1312 916 167 35 0 chr12 95394613 95394787 -25862743 + B2_Mm2 SINE B2 2 181 -14 5 1312 366 215 12 12 chr12 95395876 95395956 -25861574 + Lx9 LINE L1 6822 6901 -743 5 1312 4478 96 50 1 chr12 95396170 95396824 -25860706 + L1Md_F2 LINE L1 5860 6545 -37 5 1312 2500 48 3 3 chr12 95396816 95397131 -25860399 + L1Md_F2 LINE L1 5270 5584 -299 5 1312 7808 60 1 5 chr12 95397133 95398132 -25859398 + L1Md_F2 LINE L1 5587 6581 -1 5 1312 4250 127 12 62 chr12 95398221 95398333 -25859197 + Lx3B LINE L1 5162 5271 -615 5 1312 279 0 0 0 chr12 95398333 95398364 -25859166 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1312 6582 152 59 32 chr12 95398364 95400007 -25857523 + Lx3B LINE L1 5272 6973 0 5 1312 22 0 0 0 chr12 95400252 95400274 -25857256 + AT_rich Low_complexity Low_complexity 1 22 0 5 1312 430 212 195 0 chr12 95400478 95400591 -25856939 - B1_Mus1 SINE Alu -13 135 1 5 1312 21 0 0 0 chr12 95400593 95400614 -25856916 + AT_rich Low_complexity Low_complexity 1 21 0 5 1312 438 165 0 0 chr12 95401564 95401643 -25855887 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1312 304 194 53 61 chr12 95401668 95401800 -25855730 + Lx9 LINE L1 7507 7637 -7 5 1312 763 276 25 5 chr12 95401951 95402155 -25855375 + B3 SINE B2 3 210 -6 5 1312 207 0 0 0 chr12 95402373 95402396 -25855134 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1312 288 358 16 24 chr12 95402413 95402536 -25854994 + B4 SINE B4 19 140 -152 5 1312 437 345 23 0 chr12 95402562 95402733 -25854797 + B4A SINE B4 118 292 0 5 1312 243 0 0 0 chr12 95404346 95404373 -25853157 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1312 535 350 5 25 chr12 95405266 95405465 -25852065 - B3A SINE B2 0 198 4 5 1312 22 0 0 0 chr12 95405623 95405645 -25851885 + AT_rich Low_complexity Low_complexity 1 22 0 5 1312 21 0 0 0 chr12 95406119 95406140 -25851390 + AT_rich Low_complexity Low_complexity 1 21 0 5 1312 281 89 22 0 chr12 95407423 95407468 -25850062 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1312 214 0 53 95 chr12 95408308 95408403 -25849127 + (TATATG)n Simple_repeat Simple_repeat 1 91 0 5 1312 6975 153 26 113 chr12 95408722 95409821 -25847709 - Lx LINE L1 -2 6652 5526 5 1312 1429 87 0 42 chr12 95409821 95410038 -25847492 - MTA_Mm LTR MaLR 0 396 189 5 1312 975 92 7 0 chr12 95410000 95410141 -25847389 + MTB LTR MaLR 259 400 0 5 1312 6975 153 26 113 chr12 95410141 95411254 -25846276 - Lx LINE L1 -2 5525 4382 5 1312 425 373 19 0 chr12 95411317 95411478 -25846052 - MTE2b LTR MaLR -210 169 6 5 1312 1053 201 21 0 chr12 95412075 95412269 -25845261 - RMER15 LTR ERVL 0 575 378 5 1312 669 231 14 7 chr12 95412288 95412436 -25845094 - RMER15 LTR ERVL -424 151 3 5 1312 223 174 57 14 chr12 95413003 95413073 -25844457 + (TTAA)n Simple_repeat Simple_repeat 4 76 0 5 1312 486 0 0 0 chr12 95413122 95413176 -25844354 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1312 831 198 226 44 chr12 95413232 95413507 -25844023 - RMER15 LTR ERVL -142 433 109 5 1312 232 48 48 0 chr12 95413533 95413575 -25843955 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 5 1312 1080 257 54 122 chr12 95413925 95414500 -25843030 + Lx7 LINE L1 7161 7696 0 5 1312 452 333 44 48 chr12 95414794 95415046 -25842484 + MLT2C2 LTR ERVL 10 260 -204 5 1312 21 57 0 0 chr12 95415275 95415310 -25842220 + AT_rich Low_complexity Low_complexity 1 35 0 5 1312 1126 0 0 0 chr12 95415323 95415457 -25842073 + L1Md_T LINE L1 6430 6563 -19 5 1312 483 285 21 78 chr12 95415464 95415556 -25841974 - B3 SINE B2 -2 214 127 5 1312 195 69 0 0 chr12 95415556 95415585 -25841945 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1312 483 285 21 78 chr12 95415585 95415633 -25841897 - B3 SINE B2 -90 126 82 5 1312 336 102 0 0 chr12 95416179 95416228 -25841302 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1312 1056 82 7 0 chr12 95416228 95416374 -25841156 - B1_Mus1 SINE Alu 0 148 2 5 1312 1152 132 5 31 chr12 95416440 95416636 -25840894 + B2_Mm2 SINE B2 2 192 -3 5 1312 2687 54 3 6 chr12 95416640 95416974 -25840556 + L1Md_F2 LINE L1 6064 6396 -186 5 1312 207 0 0 0 chr12 95417343 95417366 -25840164 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1312 4328 222 43 20 chr12 95417599 95418646 -25838884 + Lx2B LINE L1 5928 6998 -2 5 1312 504 86 0 0 chr12 95418723 95418793 -25838737 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1312 272 276 80 25 chr12 95418808 95418928 -25838602 + MLT1A LTR MaLR 228 366 -8 6 1313 209 326 12 0 chr12 95421360 95421446 -25836084 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 6 1313 573 352 42 18 chr12 95421832 95422214 -25835316 + Lx8 LINE L1 6849 7239 -234 6 1313 571 252 191 12 chr12 95423493 95423734 -25833796 - Lx9 LINE L1 0 7644 7361 6 1313 303 214 0 0 chr12 95424119 95424189 -25833341 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1313 646 304 103 10 chr12 95424662 95424974 -25832556 + MER2 DNA MER2_type 3 343 -2 6 1313 210 204 20 0 chr12 95425225 95425274 -25832256 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 6 1313 196 339 0 33 chr12 95425303 95425364 -25832166 + L2b LINE L2 3254 3312 -63 6 1313 230 282 42 14 chr12 95427351 95427423 -25830107 + MLT1C LTR MaLR 15 88 -379 6 1313 315 128 35 0 chr12 95427504 95427590 -25829940 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 1313 451 365 62 44 chr12 95427613 95427885 -25829645 + MLT1C LTR MaLR 188 464 -3 6 1313 396 0 0 0 chr12 95428788 95428832 -25828698 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1313 444 355 53 11 chr12 95429989 95430251 -25827279 - MER58B DNA MER1_type -5 336 64 6 1313 222 156 0 22 chr12 95430586 95430632 -25826898 + A-rich Low_complexity Low_complexity 5 49 0 6 1313 370 202 101 0 chr12 95432170 95432289 -25825241 + Lx9 LINE L1 7514 7644 0 6 1313 22 35 0 0 chr12 95432567 95432596 -25824934 + AT_rich Low_complexity Low_complexity 1 29 0 6 1313 48 43 0 0 chr12 95432741 95432810 -25824720 + AT_rich Low_complexity Low_complexity 1 69 0 6 1313 40 73 0 0 chr12 95432877 95432959 -25824571 + AT_rich Low_complexity Low_complexity 1 82 0 6 1313 21 71 0 0 chr12 95432993 95433035 -25824495 + AT_rich Low_complexity Low_complexity 1 42 0 6 1313 233 227 0 26 chr12 95433080 95433157 -25824373 - Lx5 LINE L1 0 7050 6976 6 1313 3037 204 7 20 chr12 95433145 95433835 -25823695 + L1_Mur2 LINE L1 4936 5660 -631 6 1313 638 322 8 5 chr12 95434218 95434411 -25823119 - B3 SINE B2 -5 193 4 6 1313 21 36 0 0 chr12 95434525 95434553 -25822977 + AT_rich Low_complexity Low_complexity 1 28 0 6 1313 23 0 0 0 chr12 95435425 95435448 -25822082 + AT_rich Low_complexity Low_complexity 1 23 0 6 1313 426 20 0 0 chr12 95435866 95435917 -25821613 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1313 438 20 0 0 chr12 95435919 95435970 -25821560 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1313 372 297 118 8 chr12 95436028 95436147 -25821383 - RSINE1 SINE B4 -30 135 4 6 1313 701 201 14 21 chr12 95436716 95436858 -25820672 + B1_Mus1 SINE Alu 2 142 -6 6 1313 183 42 0 0 chr12 95436862 95436886 -25820644 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1313 1984 253 22 4 chr12 95436889 95437353 -25820177 - Lx6 LINE L1 -654 6806 6335 6 1313 3177 51 0 5 chr12 95437353 95437747 -25819783 + L1Md_F2 LINE L1 6177 6568 -14 6 1313 1957 234 33 31 chr12 95437791 95438315 -25819215 - Lx6 LINE L1 -1123 6337 5813 6 1313 315 0 0 0 chr12 95439317 95439352 -25818178 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 6 1313 23 0 0 0 chr12 95439404 95439427 -25818103 + AT_rich Low_complexity Low_complexity 1 23 0 6 1313 1154 224 35 113 chr12 95439455 95439975 -25817555 - Lx6 LINE L1 -1303 4577 4099 6 1313 189 234 0 0 chr12 95440004 95440068 -25817462 + (TGG)n Simple_repeat Simple_repeat 1 64 0 6 1313 2256 113 50 3 chr12 95440091 95440455 -25817075 + L1_Mus4 LINE L1 6253 6633 -3 6 1313 1920 202 75 24 chr12 95440462 95440968 -25816562 - RLTR31_Mm LTR ERVK -26 535 4 6 1313 2627 239 60 120 chr12 95440970 95442935 -25814595 - Lx6 LINE L1 -3814 2066 219 6 1313 1422 149 4 8 chr12 95442935 95443178 -25814352 + Lx LINE L1 6412 6653 -1 6 1313 1709 269 81 145 chr12 95443178 95443335 -25814195 - Lx6 LINE L1 -7510 218 61 6 1313 264 240 21 5 chr12 95444542 95444745 -25812785 + CT-rich Low_complexity Low_complexity 1 206 0 6 1313 410 268 189 40 chr12 95444756 95444858 -25812672 - ID_B1 SINE B4 -22 202 91 6 1313 282 0 85 17 chr12 95444858 95444917 -25812613 + (TTTG)n Simple_repeat Simple_repeat 4 66 0 6 1313 410 268 189 40 chr12 95444917 95444989 -25812541 - ID_B1 SINE B4 -134 90 4 6 1313 1671 323 81 43 chr12 95445605 95446437 -25811093 - Lx8 LINE L1 -219 7254 6392 6 1313 320 0 25 0 chr12 95446455 95446495 -25811035 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1313 252 280 53 13 chr12 95446508 95446584 -25810946 - Lx8 LINE L1 -1107 6366 6288 6 1313 8106 49 1 0 chr12 95446584 95447575 -25809955 - L1Md_T LINE L1 0 6582 5591 6 1313 31 26 0 0 chr12 95447711 95447749 -25809781 + AT_rich Low_complexity Low_complexity 1 38 0 6 1313 5289 69 6 0 chr12 95448734 95449417 -25808113 - L1_Mus2 LINE L1 -266 6300 5614 6 1313 2130 70 7 3 chr12 95449417 95449703 -25807827 + L1_Mus2 LINE L1 6280 6566 0 6 1313 210 290 140 0 chr12 95450676 95450769 -25806761 - B1F1 SINE Alu -18 131 26 6 1313 899 351 72 21 chr12 95451210 95451586 -25805944 + MER70A LTR ERVL 76 470 -2 6 1313 371 314 0 153 chr12 95451593 95451661 -25805869 + Lx9 LINE L1 7226 7286 -358 6 1313 934 155 6 11 chr12 95451661 95451837 -25805693 + Lx2 LINE L1 6820 6994 -3 6 1313 371 318 0 147 chr12 95451837 95452032 -25805498 + Lx9 LINE L1 7163 7435 -209 6 1313 288 0 0 0 chr12 95452032 95452064 -25805466 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1313 432 0 0 0 chr12 95452064 95452111 -25805419 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1313 307 364 0 75 chr12 95452111 95452125 -25805405 + Lx9 LINE L1 7322 7334 -139 6 1313 330 312 48 53 chr12 95452421 95452648 -25804882 - L1MC5 LINE L1 -431 7530 7305 6 1313 39 50 0 0 chr12 95452657 95452717 -25804813 + AT_rich Low_complexity Low_complexity 1 60 0 6 1313 27 0 0 0 chr12 95452784 95452811 -25804719 + AT_rich Low_complexity Low_complexity 1 27 0 6 1313 639 347 13 13 chr12 95453054 95453282 -25804248 - B4 SINE B4 -38 254 27 6 1313 270 0 0 0 chr12 95453881 95453911 -25803619 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 6 1313 292 301 9 17 chr12 95453944 95454059 -25803471 + MLT1B LTR MaLR 35 148 -242 6 1313 239 306 23 70 chr12 95454480 95454652 -25802878 + MER2 DNA MER2_type 86 249 -96 6 1313 402 172 0 29 chr12 95454652 95454754 -25802776 + (TA)n Simple_repeat Simple_repeat 2 100 0 6 1313 420 111 0 0 chr12 95454783 95454846 -25802684 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1313 1518 184 60 13 chr12 95456549 95456863 -25800667 - RMER1B Other Other 0 1066 738 6 1313 400 0 0 0 chr12 95456967 95457020 -25800510 - L1Md_T LINE L1 0 6582 6530 6 1313 497 185 0 52 chr12 95457055 95457152 -25800378 - RMER1B Other Other -337 729 638 6 1313 262 61 41 0 chr12 95457477 95457526 -25800004 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 1313 23 0 0 0 chr12 95458890 95458913 -25798617 + AT_rich Low_complexity Low_complexity 1 23 0 6 1313 307 271 213 52 chr12 95458958 95459094 -25798436 - RSINE1 SINE B4 -4 161 4 6 1313 1823 229 48 33 chr12 95459274 95459794 -25797736 + RLTR12B LTR ERVK 1 528 0 6 1313 380 189 43 43 chr12 95459805 95459899 -25797631 + Lx8 LINE L1 6318 6411 -1062 6 1313 230 269 90 0 chr12 95459903 95459970 -25797560 - RLTR19A LTR ERVK -153 343 271 6 1313 773 365 71 13 chr12 95459991 95460524 -25797006 + Lx8 LINE L1 6501 7064 -409 6 1313 357 350 54 99 chr12 95460949 95461171 -25796359 + B4A SINE B4 19 230 -62 6 1313 1135 320 42 21 chr12 95461183 95461607 -25795923 + Lx8 LINE L1 7041 7473 0 6 1313 408 40 0 0 chr12 95461684 95461734 -25795796 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1313 225 94 0 0 chr12 95461962 95461994 -25795536 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1313 198 164 0 0 chr12 95462086 95462141 -25795389 + T-rich Low_complexity Low_complexity 1 55 0 6 1313 1075 90 0 7 chr12 95462143 95462289 -25795241 - B1_Mus1 SINE Alu -2 146 2 6 1313 495 289 10 52 chr12 95463801 95464014 -25793516 + L1_Rod LINE L1 5500 5685 -162 6 1313 549 296 19 12 chr12 95464015 95464176 -25793354 + Lx8 LINE L1 7163 7324 -149 6 1313 504 59 0 0 chr12 95464178 95464246 -25793284 + (CATA)n Simple_repeat Simple_repeat 4 71 0 6 1313 1017 72 65 0 chr12 95464434 95464572 -25792958 + B1_Mm SINE Alu 1 147 0 6 1313 243 161 0 0 chr12 95466113 95466169 -25791361 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1313 624 147 0 0 chr12 95466710 95466860 -25790670 + (A)n Simple_repeat Simple_repeat 1 150 0 6 1313 225 0 0 0 chr12 95467206 95467231 -25790299 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1313 2710 155 60 0 chr12 95467233 95467698 -25789832 - Lx3B LINE L1 -11 6962 6470 6 1313 407 394 18 12 chr12 95468064 95468231 -25789299 - B4 SINE B4 -61 231 64 6 1313 461 167 21 0 chr12 95468552 95468648 -25788882 + GA-rich Low_complexity Low_complexity 5 102 0 6 1313 1950 180 65 37 chr12 95469165 95469593 -25787937 + RMER19A LTR ERVK 298 737 0 6 1313 1207 287 55 49 chr12 95469594 95470121 -25787409 - Lx7 LINE L1 -1305 6391 5862 6 1313 1649 206 59 20 chr12 95470125 95470466 -25787064 + ORR1B1 LTR MaLR 41 394 0 6 1313 5186 186 30 71 chr12 95470513 95471802 -25785728 - Lx7 LINE L1 -371 5509 4275 6 1313 13611 63 1 0 chr12 95471808 95474291 -25783239 - L1Md_F2 LINE L1 -2 6580 4098 6 1313 266 232 0 0 chr12 95474297 95474353 -25783177 - Lx7 LINE L1 -1550 4330 4275 6 1313 2986 79 0 5 chr12 95474445 95474841 -25782689 - L1Md_F3 LINE L1 -99 6483 6090 6 1313 513 85 0 11 chr12 95474842 95474937 -25782593 + L1Md_F3 LINE L1 6490 6583 -1 6 1313 673 244 150 7 chr12 95475014 95475321 -25782209 - ORR1D1 LTR MaLR -8 366 16 6 1313 1163 205 48 0 chr12 95475404 95475672 -25781858 - Lx7 LINE L1 -1609 4271 3991 6 1313 729 277 24 10 chr12 95475905 95476113 -25781417 - B3 SINE B2 -5 211 1 6 1313 547 135 29 0 chr12 95477020 95477124 -25780406 + CT-rich Low_complexity Low_complexity 2 108 0 6 1313 1182 54 0 0 chr12 95477125 95477272 -25780258 - B1_Mm SINE Alu 0 147 1 6 1313 25 0 0 0 chr12 95479090 95479115 -25778415 + AT_rich Low_complexity Low_complexity 1 25 0 6 1313 257 286 40 20 chr12 95479437 95479537 -25777993 + Lx8 LINE L1 6903 7004 -469 6 1313 7751 101 2 26 chr12 95479537 95480719 -25776811 + Lx3_Mus LINE L1 5856 7008 -1 6 1313 26 0 0 0 chr12 95480720 95480746 -25776784 + AT_rich Low_complexity Low_complexity 1 26 0 6 1313 396 331 16 0 chr12 95481100 95481221 -25776309 + B3 SINE B2 94 216 0 6 1313 744 278 5 5 chr12 95481735 95481923 -25775607 + B3 SINE B2 2 189 -27 6 1313 24 0 0 0 chr12 95482069 95482093 -25775437 + AT_rich Low_complexity Low_complexity 1 24 0 6 1313 237 293 51 8 chr12 95482200 95482317 -25775213 + L1MC4 LINE L1 6249 6370 -1672 6 1313 1033 114 0 0 chr12 95482326 95482466 -25775064 + B1_Mus1 SINE Alu 2 141 -7 6 1313 405 58 0 0 chr12 95482468 95482520 -25775010 + (A)n Simple_repeat Simple_repeat 1 52 0 7 1313 243 0 0 0 chr12 95482582 95482609 -25774921 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 1313 252 122 0 0 chr12 95483122 95483163 -25774367 + (GGA)n Simple_repeat Simple_repeat 2 42 0 7 1313 906 282 122 18 chr12 95484894 95484976 -25772554 + MTE2b LTR MaLR 1 89 -290 7 1313 279 0 42 42 chr12 95484976 95485024 -25772506 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 7 1313 906 282 122 18 chr12 95485024 95485284 -25772246 + MTE2b LTR MaLR 90 379 0 7 1313 226 378 23 23 chr12 95486271 95486401 -25771129 - B4A SINE B4 -119 173 44 7 1313 21 0 0 0 chr12 95486507 95486528 -25771002 + AT_rich Low_complexity Low_complexity 1 21 0 7 1313 3435 25 2 0 chr12 95486836 95487231 -25770299 - MTA_Mm LTR MaLR 0 396 1 7 1313 24 0 0 0 chr12 95488677 95488701 -25768829 + AT_rich Low_complexity Low_complexity 1 24 0 7 1313 25 31 0 0 chr12 95488742 95488774 -25768756 + AT_rich Low_complexity Low_complexity 1 32 0 7 1313 387 0 0 0 chr12 95488826 95488869 -25768661 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 1313 3030 74 14 19 chr12 95489036 95489465 -25768065 + L1_Mus3 LINE L1 6208 6634 -4 7 1313 534 70 0 0 chr12 95489501 95489572 -25767958 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 1313 23 33 0 0 chr12 95489676 95489706 -25767824 + AT_rich Low_complexity Low_complexity 1 30 0 7 1313 218 235 14 14 chr12 95489826 95489895 -25767635 + ID4_ SINE ID 4 72 -11 7 1313 1030 117 0 0 chr12 95489931 95490076 -25767454 + B1_Mus2 SINE Alu 3 147 0 7 1313 195 184 0 0 chr12 95490099 95490137 -25767393 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 1313 32 26 0 0 chr12 95490268 95490307 -25767223 + AT_rich Low_complexity Low_complexity 1 39 0 7 1313 242 26 26 0 chr12 95490307 95490346 -25767184 - L1Md_T LINE L1 -3 6579 6540 7 1313 227 326 60 20 chr12 95490524 95490624 -25766906 + MIR SINE MIR 44 147 -115 7 1313 705 118 0 0 chr12 95490934 95491044 -25766486 + (TA)n Simple_repeat Simple_repeat 2 111 0 7 1313 280 326 87 34 chr12 95492815 95492964 -25764566 - MTEa LTR MaLR -220 159 3 7 1313 219 265 59 18 chr12 95493019 95493188 -25764342 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 7 1313 1919 53 24 0 chr12 95493514 95493760 -25763770 - L1Md_A LINE L1 -1 6581 6330 7 1313 23 0 0 0 chr12 95494771 95494794 -25762736 + AT_rich Low_complexity Low_complexity 1 23 0 7 1313 210 184 0 20 chr12 95494945 95494995 -25762535 + T-rich Low_complexity Low_complexity 2 50 0 7 1313 417 39 0 0 chr12 95496123 95496174 -25761356 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 7 1313 1903 142 6 28 chr12 95497440 95497765 -25759765 + ORR1A3 LTR MaLR 1 318 -8 7 1313 516 105 0 0 chr12 95497983 95498059 -25759471 + (TC)n Simple_repeat Simple_repeat 1 76 0 7 1313 2051 353 16 13 chr12 95498175 95499045 -25758485 - RodERV21-int LTR ERV1 -145 4846 3974 7 1313 757 248 25 20 chr12 95499046 95499248 -25758282 - ORR1A4 LTR MaLR -126 203 1 7 1313 459 0 0 0 chr12 95499393 95499444 -25758086 + (CAG)n Simple_repeat Simple_repeat 1 51 0 7 1313 243 0 0 0 chr12 95499444 95499471 -25758059 + (GGA)n Simple_repeat Simple_repeat 2 28 0 7 1313 257 327 0 9 chr12 95500227 95500335 -25757195 - MER52-int LTR ERV1 -1319 5772 5666 1 1313 3753 108 36 40 chr12 95500381 95501011 -25756519 + RLTR13D6 LTR ERVK 275 902 0 2 1313 333 0 0 0 chr12 95501725 95501762 -25755768 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1313 418 324 71 11 chr12 95503931 95504115 -25753415 - MamRep1161 DNA TcMar -751 206 12 4 1313 205 298 41 8 chr12 95505650 95505772 -25751758 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 5 1313 399 371 82 40 chr12 95505819 95506198 -25751332 - MLT1C LTR MaLR -5 462 68 6 1313 1042 36 21 0 chr12 95506487 95506627 -25750903 - L1Md_F2 LINE L1 0 6582 6440 7 1313 2039 95 3 69 chr12 95506709 95507058 -25750472 - IAPLTR1a_Mm LTR ERVK -11 326 1 8 1313 28728 15 4 0 chr12 95507058 95510283 -25747247 - IAPEz-int LTR ERVK 0 6481 3244 8 1313 24071 8 18 0 chr12 95510275 95512977 -25744553 - IAPEz-int LTR ERVK -3730 2751 1 8 1313 2022 98 3 69 chr12 95512978 95513327 -25744203 - IAPLTR1a_Mm LTR ERVK -11 326 1 8 1313 213 94 0 0 chr12 95513650 95513682 -25743848 + (TTG)n Simple_repeat Simple_repeat 2 33 0 9 1313 1648 241 168 73 chr12 95514256 95514910 -25742620 + RMER6D LTR ERVK 1 716 -4 1 1313 1543 57 0 0 chr12 95515288 95515480 -25742050 - B2_Mm1a SINE B2 -1 192 1 1 1313 487 274 109 43 chr12 95515974 95516213 -25741317 - MTD LTR MaLR -79 340 61 1 1313 2624 108 15 5 chr12 95516213 95516612 -25740918 + RLTR9D LTR ERVK 1 403 0 1 1313 487 301 103 53 chr12 95516612 95516667 -25740863 - MTD LTR MaLR -359 60 1 1 1313 980 125 0 6 chr12 95516740 95516901 -25740629 + (GAA)n Simple_repeat Simple_repeat 3 162 0 1 1313 251 183 0 27 chr12 95516911 95516984 -25740546 + GA-rich Low_complexity Low_complexity 2 72 0 1 1313 1213 54 0 0 chr12 95517070 95517217 -25740313 + B1_Mus2 SINE Alu 1 147 0 1 1313 38 39 0 0 chr12 95517383 95517435 -25740095 + AT_rich Low_complexity Low_complexity 1 52 0 1 1313 381 22 0 0 chr12 95517607 95517653 -25739877 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 1 1313 1356 312 103 20 chr12 95517687 95518472 -25739058 - Lx8 LINE L1 -213 7260 6411 1 1313 186 71 0 0 chr12 95519977 95520005 -25737525 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1313 205 167 25 37 chr12 95522390 95522471 -25735059 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1313 713 118 8 0 chr12 95522822 95522941 -25734589 + (TCC)n Simple_repeat Simple_repeat 2 121 0 2 1313 462 248 126 36 chr12 95523037 95523204 -25734326 + MTD LTR MaLR 1 182 -237 2 1313 3945 62 7 11 chr12 95523762 95524813 -25732717 - L1Md_F2 LINE L1 -11 6571 5425 2 1313 1594 51 5 14 chr12 95524812 95525030 -25732500 + L1Md_F2 LINE L1 5199 5414 -469 2 1313 391 384 69 25 chr12 95525031 95525234 -25732296 - B4A SINE B4 -63 229 18 2 1313 291 306 0 9 chr12 95525325 95525434 -25732096 + CT-rich Low_complexity Low_complexity 3 110 0 2 1313 243 61 0 0 chr12 95525436 95525469 -25732061 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1313 234 150 0 0 chr12 95527004 95527044 -25730486 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1313 306 0 0 0 chr12 95527044 95527078 -25730452 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1313 2502 49 0 24 chr12 95527079 95527413 -25730117 + IAPEY2_LTR LTR ERVK 32 357 0 3 1313 529 178 8 8 chr12 95527413 95527532 -25729998 + (TA)n Simple_repeat Simple_repeat 2 120 0 3 1313 855 317 75 40 chr12 95527966 95528341 -25729189 + MTD LTR MaLR 18 405 -14 3 1313 189 0 0 0 chr12 95528530 95528551 -25728979 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 1313 671 0 13 0 chr12 95528606 95528685 -25728845 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 3 1313 509 281 150 46 chr12 95528690 95529108 -25728422 - MT2A LTR ERVL -125 459 2 3 1313 24 32 0 0 chr12 95529142 95529173 -25728357 + AT_rich Low_complexity Low_complexity 1 31 0 3 1313 226 314 69 84 chr12 95529863 95530138 -25727392 - MER110A LTR ERV1 0 468 198 3 1313 515 299 53 53 chr12 95531011 95531198 -25726332 + MTEa LTR MaLR 3 189 -190 3 1313 786 37 0 0 chr12 95531953 95532062 -25725468 - L1Md_T LINE L1 0 6582 6474 3 1313 22 35 0 0 chr12 95532184 95532213 -25725317 + AT_rich Low_complexity Low_complexity 1 29 0 4 1313 181 57 57 0 chr12 95532330 95532365 -25725165 + (CAA)n Simple_repeat Simple_repeat 3 39 0 4 1313 407 348 67 4 chr12 95532388 95532613 -25724917 - MLT1D LTR MaLR -4 501 263 4 1313 264 355 0 0 chr12 95532646 95532767 -25724763 - MLT1D LTR MaLR -322 183 63 4 1313 315 0 0 0 chr12 95532940 95532975 -25724555 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1313 432 0 0 0 chr12 95533829 95533877 -25723653 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1313 444 19 0 0 chr12 95534033 95534086 -25723444 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1313 390 240 0 50 chr12 95534166 95534267 -25723263 - B1_Mur4 SINE Alu -21 129 34 4 1313 432 0 0 0 chr12 95535206 95535254 -25722276 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1313 5142 260 41 71 chr12 95535263 95536643 -25720887 - Lx7 LINE L1 -224 7472 6176 4 1313 3404 65 38 0 chr12 95536643 95537090 -25720440 - L1_Mus1 LINE L1 -3 6564 6101 4 1313 5142 266 39 75 chr12 95537090 95537499 -25720031 - Lx7 LINE L1 -1521 6175 5746 4 1313 21 0 0 0 chr12 95538391 95538412 -25719118 + AT_rich Low_complexity Low_complexity 1 21 0 5 1313 21 0 0 0 chr12 95538535 95538556 -25718974 + AT_rich Low_complexity Low_complexity 1 21 0 5 1313 271 305 27 60 chr12 95541037 95541187 -25716343 + RLTR14 LTR ERV1 237 381 -1 5 1313 21 89 0 0 chr12 95541256 95541312 -25716218 + AT_rich Low_complexity Low_complexity 1 56 0 5 1313 497 185 22 39 chr12 95541668 95541848 -25715682 + CT-rich Low_complexity Low_complexity 4 180 0 5 1313 23 86 0 0 chr12 95542099 95542157 -25715373 + AT_rich Low_complexity Low_complexity 1 58 0 5 1313 408 324 99 67 chr12 95542312 95542626 -25714904 - Lx8 LINE L1 -199 7274 6951 5 1313 994 70 7 65 chr12 95542629 95542782 -25714748 + B1_Mus1 SINE Alu 5 148 0 5 1313 320 43 0 21 chr12 95542804 95542851 -25714679 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 5 1313 2108 94 16 44 chr12 95543310 95543631 -25713899 + ORR1A2 LTR MaLR 8 319 -8 5 1313 405 329 70 14 chr12 95543939 95544152 -25713378 + MLT1E1A LTR MaLR 432 656 -24 6 1313 2006 203 49 9 chr12 95544358 95544806 -25712724 - RMER4A LTR ERVK 0 466 1 6 1313 317 274 36 0 chr12 95546103 95546187 -25711343 + B3 SINE B2 129 215 -1 6 1313 1074 173 34 5 chr12 95546340 95546549 -25710981 + Lx2B LINE L1 6781 6995 -5 6 1313 221 57 29 0 chr12 95546834 95546869 -25710661 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 6 1313 470 197 0 8 chr12 95548375 95548498 -25709032 + GA-rich Low_complexity Low_complexity 6 127 0 6 1313 1123 107 0 11 chr12 95548499 95548679 -25708851 + (GAA)n Simple_repeat Simple_repeat 2 179 0 6 1313 994 193 20 10 chr12 95548928 95549132 -25708398 - Lx9 LINE L1 -429 7215 7010 6 1313 3316 291 40 38 chr12 95549133 95550192 -25707338 - RMER1B Other Other -5 1061 1 6 1313 2301 112 12 0 chr12 95550549 95550872 -25706658 + ORR1A2 LTR MaLR 1 327 0 6 1313 2412 151 24 5 chr12 95550872 95551256 -25706274 + ORR1A2-int LTR MaLR 1 392 -1571 6 164 2886 78 30 44 chr12 95551256 95551687 -25705843 + RLTR13B4 LTR ERVK 1 425 -378 7 1314 527 258 153 25 chr12 95551730 95551965 -25705565 + RLTR10A LTR ERVK 147 411 0 7 1314 349 206 71 53 chr12 95551984 95552097 -25705433 + RLTR10-int LTR ERVK 319 433 -1554 7 1314 3948 314 57 47 chr12 95552799 95553084 -25704446 + IAP-d-int LTR ERVK 2135 2414 -4128 7 1314 1684 173 9 44 chr12 95553084 95553404 -25704126 + RLTR27 LTR ERVK 1 309 0 7 1314 3948 293 52 43 chr12 95553404 95556723 -25700807 + IAP-d-int LTR ERVK 992 7040 -204 7 1314 523 258 136 13 chr12 95556768 95557004 -25700526 + RLTR10A LTR ERVK 147 411 0 7 1314 2907 85 0 17 chr12 95557004 95557411 -25700119 + RLTR13B4 LTR ERVK 404 803 0 7 1314 5112 184 55 29 chr12 95557414 95558527 -25699003 + ORR1A3-int LTR MaLR 384 1525 -438 7 1314 397 260 10 62 chr12 95558536 95558745 -25698785 - Lx7 LINE L1 -5 7691 7494 7 1314 421 279 20 48 chr12 95558815 95558962 -25698568 - B1_Mur2 SINE Alu -6 143 1 7 1314 261 0 0 0 chr12 95559604 95559633 -25697897 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1314 294 73 0 0 chr12 95560114 95560155 -25697375 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1314 493 322 58 4 chr12 95560156 95560396 -25697134 - Lx7 LINE L1 -384 7312 7060 7 1314 426 69 0 0 chr12 95561270 95561328 -25696202 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1314 413 18 54 0 chr12 95562042 95562098 -25695432 + (TTTTA)n Simple_repeat Simple_repeat 1 59 0 8 1314 465 322 63 6 chr12 95562306 95562481 -25695049 + B4A SINE B4 102 286 -6 8 1314 254 224 12 0 chr12 95562577 95562662 -25694868 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 8 1314 26 50 0 0 chr12 95562699 95562739 -25694791 + AT_rich Low_complexity Low_complexity 1 40 0 8 1314 3678 37 2 34 chr12 95563206 95563681 -25693849 - L1Md_F2 LINE L1 -535 6047 5588 8 1314 4104 54 0 37 chr12 95563690 95564233 -25693297 + L1Md_F2 LINE L1 6060 6582 0 8 1314 26 88 0 0 chr12 95564852 95564920 -25692610 + AT_rich Low_complexity Low_complexity 1 68 0 8 1314 4897 81 4 30 chr12 95565667 95566356 -25691174 + L1_Mus2 LINE L1 5895 6565 -1 8 1314 8696 179 49 7 chr12 95567201 95569163 -25688367 - Lx3C LINE L1 -901 6075 4026 8 1314 3535 233 52 31 chr12 95569186 95570239 -25687291 + Lx3C LINE L1 6019 6999 -1 8 1314 336 337 42 12 chr12 95570940 95571108 -25686422 + L1MC3 LINE L1 7609 7781 -4 9 1314 387 292 83 23 chr12 95571727 95571860 -25685670 + RSINE1 SINE B4 25 165 0 9 1314 242 236 18 0 chr12 95571863 95571918 -25685612 + GA-rich Low_complexity Low_complexity 2 57 0 9 1314 270 152 0 0 chr12 95571933 95571992 -25685538 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 9 1314 1260 289 47 5 chr12 95572306 95572723 -25684807 - Lx5 LINE L1 -741 6719 6051 9 1314 21 0 0 0 chr12 95573512 95573533 -25683997 + AT_rich Low_complexity Low_complexity 1 21 0 9 1314 234 0 0 0 chr12 95573600 95573626 -25683904 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1314 1117 71 0 0 chr12 95573629 95573770 -25683760 - B1_Mus1 SINE Alu -7 141 1 9 1314 185 35 69 0 chr12 95574148 95574177 -25683353 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 1314 357 363 35 50 chr12 95574360 95574560 -25682970 - L1MD3 LINE L1 -209 7786 7590 9 1314 180 0 0 0 chr12 95574699 95574719 -25682811 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1314 1121 261 60 18 chr12 95574728 95575059 -25682471 - Lx9 LINE L1 -194 7450 7106 1 1314 3956 87 4 0 chr12 95576739 95577291 -25680239 - L1_Mur1 LINE L1 -1318 4568 4015 1 1314 23 33 0 0 chr12 95577384 95577414 -25680116 + AT_rich Low_complexity Low_complexity 1 30 0 1 1314 184 250 36 55 chr12 95577435 95577490 -25680040 + MIR SINE MIR 63 116 -92 1 1314 39347 28 2 6 chr12 95577825 95583850 -25673680 - L1Md_T LINE L1 -1 6581 591 1 1314 23 0 0 0 chr12 95584330 95584353 -25673177 + AT_rich Low_complexity Low_complexity 1 23 0 1 1314 2096 76 0 68 chr12 95584802 95585128 -25672402 - L1_Mus2 LINE L1 -4 6562 6259 1 1314 1205 295 63 0 chr12 95585307 95585690 -25671840 + Lx6 LINE L1 7042 7448 -12 1 1314 1230 237 103 3 chr12 95585966 95586216 -25671314 + Lx2B LINE L1 6636 6901 -99 1 1314 717 121 0 0 chr12 95586216 95586340 -25671190 + (TG)n Simple_repeat Simple_repeat 1 124 0 1 1314 1230 254 79 22 chr12 95586340 95586416 -25671114 + Lx2B LINE L1 6902 6965 -35 1 1314 422 322 20 36 chr12 95587199 95587419 -25670111 - Lx8 LINE L1 -1067 6577 6307 1 1314 35 0 0 0 chr12 95588477 95588512 -25669018 + AT_rich Low_complexity Low_complexity 1 35 0 1 1314 827 250 164 14 chr12 95589378 95589679 -25667851 + L1_Mur3 LINE L1 4316 4652 -1228 1 1314 2560 80 0 19 chr12 95589679 95590048 -25667482 + L1Md_F2 LINE L1 6220 6581 -1 1 1314 827 250 164 14 chr12 95590048 95590168 -25667362 + L1_Mur3 LINE L1 4653 4800 -1080 1 1314 450 0 0 0 chr12 95590502 95590552 -25666978 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1314 3596 179 152 13 chr12 95590629 95591408 -25666122 - RMER19B LTR ERVK -12 890 4 1 1314 21 57 0 0 chr12 95591584 95591619 -25665911 + AT_rich Low_complexity Low_complexity 1 35 0 1 1314 555 326 15 35 chr12 95592353 95592550 -25664980 + B3A SINE B2 6 198 0 1 1314 27 29 0 0 chr12 95592551 95592585 -25664945 + AT_rich Low_complexity Low_complexity 1 34 0 1 1314 23 0 0 0 chr12 95592747 95592770 -25664760 + AT_rich Low_complexity Low_complexity 1 23 0 1 1314 247 256 22 34 chr12 95593210 95593279 -25664251 + RLTR15 LTR ERVK 1 71 -288 1 1314 2587 90 3 11 chr12 95593279 95593649 -25663881 + L1Md_F2 LINE L1 6204 6570 -12 1 1314 247 256 22 34 chr12 95593649 95593668 -25663862 + RLTR15 LTR ERVK 72 88 -271 1 1314 219 114 0 0 chr12 95594187 95594222 -25663308 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1314 1066 61 0 7 chr12 95594309 95594458 -25663072 + L1_Mus2 LINE L1 6418 6565 -1 1 1314 871 347 44 11 chr12 95595257 95595712 -25661818 - Lx8 LINE L1 0 7473 7004 1 1314 1267 315 67 16 chr12 95595800 95596306 -25661224 - Lx8 LINE L1 -665 6808 6277 1 1314 836 147 0 11 chr12 95596587 95596766 -25660764 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 1 1314 462 36 0 0 chr12 95596809 95596865 -25660665 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1314 410 332 103 55 chr12 95597146 95597436 -25660094 - MER54A LTR ERVL -491 410 107 1 1314 2497 174 128 0 chr12 95597440 95597933 -25659597 + RMER1B Other Other 511 1066 0 1 1314 1815 136 51 31 chr12 95597935 95598291 -25659239 + Lx3C LINE L1 5783 6145 -831 1 1314 417 20 0 0 chr12 95598674 95598724 -25658806 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1314 515 310 53 16 chr12 95598930 95599120 -25658410 - Tigger7 DNA MER2_type -2037 454 258 1 1314 489 383 16 8 chr12 95599104 95599346 -25658184 - MER44D DNA MER2_type -460 245 2 1 1314 328 333 0 80 chr12 95600678 95600815 -25656715 - B1F1 SINE Alu -13 136 11 1 1314 585 42 0 0 chr12 95601338 95601410 -25656120 + (TCCA)n Simple_repeat Simple_repeat 4 75 0 1 1314 294 372 120 33 chr12 95601779 95602079 -25655451 - MLT1A0 LTR MaLR -36 329 4 1 1314 432 286 213 20 chr12 95603204 95603354 -25654176 + B3 SINE B2 3 181 -35 1 1314 464 365 37 57 chr12 95603450 95603749 -25653781 - MLT1A0 LTR MaLR -44 321 29 1 1314 261 66 77 26 chr12 95603749 95603827 -25653703 + T-rich Low_complexity Low_complexity 4 85 0 1 1314 1137 75 0 0 chr12 95603827 95603974 -25653556 - B1_Mm SINE Alu 0 147 1 1 1314 22 0 0 0 chr12 95604335 95604357 -25653173 + AT_rich Low_complexity Low_complexity 1 22 0 1 1314 236 295 13 0 chr12 95604391 95604469 -25653061 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 1314 423 0 0 0 chr12 95604523 95604570 -25652960 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 1 1314 402 39 0 0 chr12 95604848 95604900 -25652630 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1314 1488 216 10 98 chr12 95605084 95605490 -25652040 - ORR1C1 LTR MaLR -8 370 1 1 1314 680 252 114 16 chr12 95605726 95605972 -25651558 - L1MC LINE L1 -2061 5724 5455 1 1314 355 311 149 6 chr12 95605982 95606150 -25651380 + MER34 LTR ERV1 83 274 -268 1 1314 248 289 62 67 chr12 95606161 95606339 -25651191 + MER34 LTR ERV1 313 489 -53 1 1314 180 0 0 0 chr12 95606525 95606545 -25650985 + (GTGTG)n Simple_repeat Simple_repeat 1 20 0 1 1314 322 146 21 0 chr12 95606678 95606774 -25650756 + (TA)n Simple_repeat Simple_repeat 1 98 0 1 1314 215 0 0 159 chr12 95606776 95606883 -25650647 + (CATAG)n Simple_repeat Simple_repeat 1 90 0 1 1314 423 0 0 0 chr12 95606885 95606932 -25650598 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1314 445 309 53 36 chr12 95607451 95607676 -25649854 - MLT2B2 LTR ERVL -275 240 12 1 1314 793 104 9 0 chr12 95607927 95608042 -25649488 + Lx3A LINE L1 6368 6483 -498 1 1314 275 262 0 149 chr12 95608042 95608076 -25649454 + MT2B LTR ERVL 137 152 -449 1 1314 572 177 141 31 chr12 95608076 95608204 -25649326 + B1_Mus1 SINE Alu 1 142 -6 1 1314 333 47 0 0 chr12 95608206 95608249 -25649281 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1314 2313 147 9 9 chr12 95608251 95608670 -25648860 + Lx3A LINE L1 6536 6971 -38 1 1314 188 67 33 0 chr12 95608752 95608782 -25648748 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1314 257 301 8 96 chr12 95609108 95609121 -25648409 + MT2B2 LTR ERVL 152 153 -431 1 1314 524 267 0 8 chr12 95609121 95609242 -25648288 + B1_Mur4 SINE Alu 2 121 -29 1 1314 2308 82 6 53 chr12 95609346 95609705 -25647825 + L1_Mus2 LINE L1 6225 6566 0 1 1314 23 0 0 0 chr12 95611057 95611080 -25646450 + AT_rich Low_complexity Low_complexity 1 23 0 1 1314 511 314 69 5 chr12 95611460 95611649 -25645881 + B3 SINE B2 2 202 -14 1 1314 463 263 29 12 chr12 95611837 95612010 -25645520 + Lx9 LINE L1 7320 7495 -149 1 1314 29 28 0 0 chr12 95612098 95612134 -25645396 + AT_rich Low_complexity Low_complexity 1 36 0 1 1314 24 0 0 0 chr12 95613179 95613203 -25644327 + AT_rich Low_complexity Low_complexity 1 24 0 1 1314 27 49 0 0 chr12 95613951 95613992 -25643538 + AT_rich Low_complexity Low_complexity 1 41 0 1 1314 24 32 0 0 chr12 95614310 95614341 -25643189 + AT_rich Low_complexity Low_complexity 1 31 0 1 1314 503 309 114 25 chr12 95614748 95614984 -25642546 + B4 SINE B4 2 258 -34 1 1314 4144 136 54 10 chr12 95615552 95615875 -25641655 - Lx2 LINE L1 -4 6993 6675 1 1314 933 35 0 0 chr12 95615875 95615988 -25641542 + (TTC)n Simple_repeat Simple_repeat 2 114 0 1 1314 4144 136 54 10 chr12 95615988 95616383 -25641147 - Lx2 LINE L1 -323 6674 6245 1 1314 3238 89 0 7 chr12 95616485 95617016 -25640514 - L1_Mus2 LINE L1 0 6566 6127 1 1314 748 92 17 0 chr12 95617398 95617517 -25640013 + (TCCC)n Simple_repeat Simple_repeat 1 121 0 1 1314 525 32 0 0 chr12 95617518 95617581 -25639949 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 1 1314 244 227 91 26 chr12 95617948 95618025 -25639505 + LTR84b LTR ERVL 40 121 -640 1 1314 429 141 0 0 chr12 95618262 95618333 -25639197 + (CAA)n Simple_repeat Simple_repeat 2 72 0 1 1314 270 197 0 84 chr12 95618515 95618681 -25638849 + CT-rich Low_complexity Low_complexity 5 156 0 1 1314 1094 82 0 7 chr12 95619082 95619230 -25638300 - B1_Mm SINE Alu 0 147 1 1 1314 586 274 30 79 chr12 95620205 95620407 -25637123 + B3A SINE B2 5 196 -2 1 1314 219 139 0 0 chr12 95621465 95621501 -25636029 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1314 22 35 0 0 chr12 95621939 95621968 -25635562 + AT_rich Low_complexity Low_complexity 1 29 0 1 1314 1645 102 23 30 chr12 95622198 95622461 -25635069 - L1_Mus2 LINE L1 -1 6565 6305 1 1314 387 0 0 0 chr12 95623096 95623139 -25634391 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1314 1074 90 7 0 chr12 95623139 95623283 -25634247 - B1_Mm SINE Alu -2 145 1 1 1314 1995 128 42 58 chr12 95623620 95624002 -25633528 - L1_Mus4 LINE L1 -4 6632 6257 1 1314 306 211 186 21 chr12 95624284 95624381 -25633149 + B4A SINE B4 180 292 0 1 1314 2853 45 0 3 chr12 95626287 95626642 -25630888 + L1Md_F2 LINE L1 6229 6582 0 1 1314 432 0 0 0 chr12 95626685 95626733 -25630797 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1 1314 602 89 11 0 chr12 95626868 95626958 -25630572 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 1314 2133 137 23 6 chr12 95627313 95627665 -25629865 - L1_Mur1 LINE L1 -188 5698 5341 1 1314 300 170 19 0 chr12 95628883 95628936 -25628594 - HAL1-3A_ME LINE L1 -829 2029 1976 1 1314 313 385 82 38 chr12 95630778 95631118 -25626412 + LTR16C LTR ERVL 73 427 -62 1 1314 213 312 13 0 chr12 95631739 95631816 -25625714 + GA-rich Low_complexity Low_complexity 3 80 0 1 1314 210 37 0 0 chr12 95631825 95631852 -25625678 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 1 1314 254 132 0 19 chr12 95631890 95631944 -25625586 + A-rich Low_complexity Low_complexity 4 56 0 1 1314 468 51 0 0 chr12 95632124 95632183 -25625347 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1314 22 35 0 0 chr12 95632722 95632751 -25624779 + AT_rich Low_complexity Low_complexity 1 29 0 1 1314 540 0 0 0 chr12 95632904 95632964 -25624566 + (TTTTG)n Simple_repeat Simple_repeat 5 64 0 1 1314 381 330 99 18 chr12 95633433 95633655 -25623875 - LTR16E2 LTR ERVL -32 536 297 1 1314 758 315 12 60 chr12 95633992 95634266 -25623264 - ORR1D2 LTR MaLR -92 267 2 2 1314 220 310 14 0 chr12 95634963 95635034 -25622496 + GA-rich Low_complexity Low_complexity 3 74 0 2 1314 323 42 0 40 chr12 95635245 95635295 -25622235 + (CATA)n Simple_repeat Simple_repeat 3 50 0 2 1314 649 302 10 45 chr12 95635677 95635875 -25621655 - B3A SINE B2 -7 191 1 2 1314 5201 112 16 11 chr12 95636375 95637167 -25620363 - Lx2A LINE L1 -2 7006 6211 2 1314 679 87 9 37 chr12 95637167 95637274 -25620256 + Lx2A LINE L1 6111 6214 -794 2 1314 490 342 78 56 chr12 95638987 95639306 -25618224 - MLT1A LTR MaLR -43 331 6 2 1314 279 262 149 0 chr12 95639874 95639981 -25617549 + Lx8 LINE L1 7002 7124 -349 2 1314 260 111 22 0 chr12 95640011 95640056 -25617474 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 2 1314 617 229 4 4 chr12 95640353 95640609 -25616921 + (TA)n Simple_repeat Simple_repeat 1 256 0 2 1314 789 67 0 0 chr12 95642392 95642496 -25615034 + (TTTCC)n Simple_repeat Simple_repeat 3 106 0 2 1314 1538 283 60 85 chr12 95643551 95644235 -25613295 + Lx6 LINE L1 6449 7115 -345 2 1314 9670 94 14 32 chr12 95644253 95646065 -25611465 + Lx3_Mus LINE L1 5227 7005 -4 2 1314 183 80 0 0 chr12 95646316 95646341 -25611189 + (TATG)n Simple_repeat Simple_repeat 3 27 0 2 1314 2943 160 16 40 chr12 95646343 95646897 -25610633 + RLTR26 LTR ERVK 1 541 -101 2 1314 880 132 14 0 chr12 95646915 95647198 -25610332 + (TCTA)n Simple_repeat Simple_repeat 1 287 0 2 1314 237 65 0 0 chr12 95649946 95649977 -25607553 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1314 513 298 83 27 chr12 95650131 95650414 -25607116 - L1_Rod LINE L1 -92 5785 5457 2 1314 271 350 35 42 chr12 95650581 95650724 -25606806 + Lx8 LINE L1 7105 7246 -227 2 1314 8070 41 2 1 chr12 95650736 95651908 -25605622 - L1Md_F2 LINE L1 -2 6580 5408 2 1314 377 132 29 0 chr12 95651907 95651975 -25605555 + L1_Mm LINE L1 5356 5425 -458 2 1314 593 279 102 6 chr12 95652643 95652809 -25604721 - MTD LTR MaLR -72 347 166 2 1314 28 29 0 0 chr12 95652827 95652862 -25604668 + AT_rich Low_complexity Low_complexity 1 35 0 2 1314 498 289 119 27 chr12 95652862 95653047 -25604483 - MTD LTR MaLR -217 204 3 2 1314 5155 70 27 7 chr12 95653439 95654139 -25603391 + L1Md_F2 LINE L1 5867 6580 -2 2 1314 416 290 46 38 chr12 95654802 95655042 -25602488 - RMER17C LTR ERVK -168 242 1 2 1314 1775 158 30 37 chr12 95655150 95655478 -25602052 + ORR1B2 LTR MaLR 42 367 0 2 1314 853 9 19 0 chr12 95655679 95655785 -25601745 + (TTTTC)n Simple_repeat Simple_repeat 2 109 0 2 1314 760 105 192 8 chr12 95655794 95655919 -25601611 - B1_Mus1 SINE Alu 0 148 1 2 1314 1622 262 65 24 chr12 95656207 95656712 -25600818 - RMER1C Other Other -1 1341 816 2 1314 189 132 0 0 chr12 95656730 95656768 -25600762 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 1314 1084 90 14 0 chr12 95656771 95656916 -25600614 - B1_Mus1 SINE Alu 0 148 2 2 1314 503 333 38 80 chr12 95658112 95658376 -25599154 + MTEb LTR MaLR 5 257 -122 2 1314 260 295 0 0 chr12 95658793 95658854 -25598676 - B4A SINE B4 -214 78 18 2 1314 210 105 0 0 chr12 95659887 95659925 -25597605 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1314 974 118 0 7 chr12 95660461 95660606 -25596924 + B1_Mus1 SINE Alu 2 145 -3 2 1314 270 336 93 33 chr12 95660636 95660787 -25596743 + ID_B1 SINE B4 8 167 -57 2 1314 207 125 0 0 chr12 95661184 95661224 -25596306 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1314 203 240 0 0 chr12 95661224 95661274 -25596256 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1314 24 67 0 0 chr12 95661879 95661924 -25595606 + AT_rich Low_complexity Low_complexity 1 45 0 2 1314 335 140 0 0 chr12 95663198 95663248 -25594282 + B3 SINE B2 5 54 -162 2 1314 261 353 77 88 chr12 95663393 95663654 -25593876 - MLT1C LTR MaLR -7 460 203 2 1314 301 338 55 74 chr12 95663838 95664055 -25593475 + L1M4 LINE L1 5375 5587 -597 2 1314 256 252 77 10 chr12 95664678 95664782 -25592748 + L1M5 LINE L1 3466 3576 -2570 2 1314 386 143 0 13 chr12 95664999 95665077 -25592453 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1314 404 303 35 151 chr12 95665081 95665365 -25592165 - B4A SINE B4 0 292 42 2 1314 331 260 20 0 chr12 95665764 95665864 -25591666 + PB1D10 SINE Alu 5 106 -11 2 1314 283 254 45 0 chr12 95665959 95666026 -25591504 + 5S rRNA rRNA 21 90 -31 2 1314 281 336 106 50 chr12 95666370 95666511 -25591019 - B1F2 SINE Alu 0 149 1 2 1314 599 278 84 17 chr12 95666511 95666586 -25590944 - ID_B1 SINE B4 -133 91 5 2 1314 22 70 0 0 chr12 95667319 95667362 -25590168 + AT_rich Low_complexity Low_complexity 1 43 0 2 1314 24 0 0 0 chr12 95667933 95667957 -25589573 + AT_rich Low_complexity Low_complexity 1 24 0 2 1314 225 0 0 0 chr12 95668079 95668104 -25589426 + (AAATG)n Simple_repeat Simple_repeat 1 25 0 2 1314 500 296 112 42 chr12 95668313 95668761 -25588769 + L1MA6 LINE L1 5746 6224 -76 2 1314 261 139 0 0 chr12 95668808 95668851 -25588679 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2 1314 564 89 0 0 chr12 95670206 95670285 -25587245 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1314 189 0 0 0 chr12 95670285 95670306 -25587224 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 1314 192 152 0 0 chr12 95670513 95670546 -25586984 + CT-rich Low_complexity Low_complexity 2 34 0 2 1314 7834 173 35 7 chr12 95670559 95671988 -25585542 - Lx4A LINE L1 -1 7057 5589 2 1314 6883 183 42 70 chr12 95672016 95673665 -25583865 - Lx4A LINE L1 -802 5075 3472 2 1314 241 202 32 106 chr12 95673665 95673759 -25583771 - ORR1B1-int LTR MaLR -293 1216 1130 2 1314 508 196 0 9 chr12 95673760 95673868 -25583662 - Lx4A LINE L1 -2498 3379 3273 2 1314 2011 204 0 5 chr12 95673871 95674285 -25583245 - Lx4A LINE L1 -3019 2858 2447 2 1314 903 254 20 29 chr12 95674284 95674592 -25582938 - Lx4A LINE L1 -6427 1301 908 2 1314 35519 41 0 3 chr12 95675579 95680634 -25576896 + L1Md_T LINE L1 455 5589 -297 2 1314 8435 31 0 1 chr12 95680634 95681631 -25575899 + L1Md_T LINE L1 5590 6585 0 2 1314 228 374 119 34 chr12 95681769 95682123 -25575407 + L3 LINE CR1 4092 4475 -14 2 1315 4167 97 7 7 chr12 95682725 95683327 -25574203 - L1_Mus2 LINE L1 -2 6564 5963 2 1315 1007 147 16 5 chr12 95683327 95683512 -25574018 + L1_Mm LINE L1 3559 3745 -2138 2 1315 1020 80 6 28 chr12 95683650 95683829 -25573701 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2 1315 462 18 0 0 chr12 95684177 95684232 -25573298 + (TTA)n Simple_repeat Simple_repeat 3 57 0 2 1315 387 0 0 0 chr12 95684422 95684465 -25573065 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1315 407 107 13 0 chr12 95684465 95684540 -25572990 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1315 447 145 0 0 chr12 95684539 95684622 -25572908 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1315 216 24 23 47 chr12 95684843 95684886 -25572644 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 2 1315 964 100 0 41 chr12 95684887 95685033 -25572497 - B1_Mus1 SINE Alu 0 148 9 2 1315 310 179 38 13 chr12 95685142 95685221 -25572309 - Lx3C LINE L1 -2 6974 6894 2 1315 450 373 31 15 chr12 95685880 95686076 -25571454 + MTEa LTR MaLR 179 377 -2 2 1315 24 32 0 0 chr12 95686286 95686317 -25571213 + AT_rich Low_complexity Low_complexity 1 31 0 2 1315 21 0 0 0 chr12 95686939 95686960 -25570570 + AT_rich Low_complexity Low_complexity 1 21 0 2 1315 322 329 0 7 chr12 95687308 95687446 -25570084 + (TATG)n Simple_repeat Simple_repeat 3 139 0 2 1315 356 188 8 23 chr12 95687449 95687580 -25569950 + (TATATG)n Simple_repeat Simple_repeat 2 130 0 2 1315 465 19 0 0 chr12 95687600 95687654 -25569876 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1315 261 0 0 0 chr12 95687654 95687683 -25569847 + (TAG)n Simple_repeat Simple_repeat 2 30 0 2 1315 273 306 83 0 chr12 95687760 95687868 -25569662 - MIRc SINE MIR -88 180 64 2 1315 6426 146 6 22 chr12 95688410 95689545 -25567985 + Lx2 LINE L1 5878 6994 -3 2 1315 21 0 0 0 chr12 95689610 95689631 -25567899 + AT_rich Low_complexity Low_complexity 1 21 0 2 1315 27 0 0 0 chr12 95689645 95689672 -25567858 + AT_rich Low_complexity Low_complexity 1 27 0 2 1315 204 156 0 62 chr12 95689797 95689845 -25567685 + A-rich Low_complexity Low_complexity 4 48 0 2 1315 1503 115 0 17 chr12 95690990 95691229 -25566301 - L1Md_F2 LINE L1 0 6582 6348 2 1315 320 343 63 74 chr12 95691450 95691749 -25565781 - RMER15 LTR ERVL -17 558 263 2 1315 246 132 0 0 chr12 95691896 95691949 -25565581 + (TTTTTG)n Simple_repeat Simple_repeat 5 57 0 2 1315 459 286 63 103 chr12 95691952 95692205 -25565325 - RMER15-int LTR ERVL -62 4937 4695 2 1315 415 103 0 37 chr12 95693077 95693158 -25564372 + (TCTCCC)n Simple_repeat Simple_repeat 3 80 0 2 1315 538 342 0 24 chr12 95693390 95693555 -25563975 + MLT1A0 LTR MaLR 17 177 -188 2 1315 1038 60 0 0 chr12 95693648 95693782 -25563748 + (GA)n Simple_repeat Simple_repeat 2 135 0 2 1315 7863 60 5 1 chr12 95693811 95694851 -25562679 - L1Md_F2 LINE L1 -1 6581 5538 2 1315 28 29 0 0 chr12 95695069 95695104 -25562426 + AT_rich Low_complexity Low_complexity 1 35 0 2 1315 459 92 0 0 chr12 95696319 95696384 -25561146 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1315 875 148 6 6 chr12 95696477 95696640 -25560890 + Lx3A LINE L1 6817 6979 -2 2 1315 27 92 0 0 chr12 95696640 95696716 -25560814 + AT_rich Low_complexity Low_complexity 1 76 0 2 1315 25 31 0 0 chr12 95696782 95696814 -25560716 + AT_rich Low_complexity Low_complexity 1 32 0 2 1315 745 301 16 56 chr12 95697243 95697493 -25560037 + RMER15 LTR ERVL 336 575 0 2 1315 756 223 166 0 chr12 95697787 95697980 -25559550 - URR1B DNA MER1_type 0 225 1 2 1315 30 27 0 0 chr12 95698174 95698211 -25559319 + AT_rich Low_complexity Low_complexity 1 37 0 2 1315 485 328 105 11 chr12 95698411 95698688 -25558842 + L1M4 LINE L1 4642 4944 -1202 2 1315 231 279 47 0 chr12 95698714 95698800 -25558730 + Lx9 LINE L1 7529 7618 -26 2 1315 1800 93 8 0 chr12 95698897 95699156 -25558374 + L1_Mus4 LINE L1 6369 6629 -7 2 1315 522 0 0 0 chr12 95700749 95700807 -25556723 + (TAAAA)n Simple_repeat Simple_repeat 3 60 0 3 1315 434 120 0 13 chr12 95700873 95700949 -25556581 + (TCC)n Simple_repeat Simple_repeat 2 76 0 3 1315 1349 317 115 13 chr12 95701353 95702059 -25555471 - Lx8 LINE L1 -135 7338 6561 3 1315 1753 120 0 4 chr12 95702062 95702329 -25555201 + MusHAL1 LINE L1 1553 1818 -894 3 1315 839 53 0 9 chr12 95702512 95702626 -25554904 + (GGGAA)n Simple_repeat Simple_repeat 3 115 0 3 1315 441 296 70 0 chr12 95703218 95703275 -25554255 - Lx6 LINE L1 -28 7432 7375 3 1315 489 17 0 0 chr12 95703275 95703333 -25554197 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1315 441 296 70 0 chr12 95703333 95703417 -25554113 - Lx6 LINE L1 -86 7374 7283 3 1315 186 344 81 32 chr12 95703517 95703703 -25553827 + L2 LINE L2 2324 2518 -901 3 1315 26 50 0 0 chr12 95704124 95704164 -25553366 + AT_rich Low_complexity Low_complexity 1 40 0 3 1315 987 80 0 0 chr12 95705262 95705400 -25552130 + (GA)n Simple_repeat Simple_repeat 1 138 0 3 1315 468 0 0 0 chr12 95706084 95706136 -25551394 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1315 330 26 0 0 chr12 95706136 95706174 -25551356 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1315 1009 121 0 0 chr12 95707447 95707588 -25549942 + B1_Mus1 SINE Alu 1 141 -7 3 1315 219 167 0 0 chr12 95707702 95707744 -25549786 + (CATA)n Simple_repeat Simple_repeat 2 43 0 3 1315 21 0 0 0 chr12 95709014 95709035 -25548495 + AT_rich Low_complexity Low_complexity 1 21 0 3 1315 23 0 0 0 chr12 95710012 95710035 -25547495 + AT_rich Low_complexity Low_complexity 1 23 0 3 1315 270 0 0 0 chr12 95710590 95710620 -25546910 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1315 1960 181 23 10 chr12 95710658 95711044 -25546486 + ORR1B1 LTR MaLR 3 393 -1 3 1315 259 302 69 63 chr12 95711220 95711379 -25546151 - RSINE1 SINE B4 -1 164 5 3 1315 2055 176 19 5 chr12 95711380 95711791 -25545739 - L1_Mur2 LINE L1 -3411 2466 2050 3 1315 31 26 0 0 chr12 95712690 95712728 -25544802 + AT_rich Low_complexity Low_complexity 1 38 0 3 1315 2276 132 3 19 chr12 95712786 95713156 -25544374 - L1_Mus4 LINE L1 -3 6633 6270 3 1315 23 0 0 0 chr12 95713359 95713382 -25544148 + AT_rich Low_complexity Low_complexity 1 23 0 3 1315 346 109 184 19 chr12 95714429 95714532 -25542998 - Lx9 LINE L1 -8 7636 7517 3 1315 436 230 0 15 chr12 95714601 95714738 -25542792 + (TA)n Simple_repeat Simple_repeat 2 136 0 3 1315 1158 275 77 19 chr12 95714743 95715175 -25542355 - Lx9 LINE L1 -127 7517 6917 3 1315 187 175 35 0 chr12 95715228 95715285 -25542245 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1315 27 62 0 0 chr12 95715623 95715671 -25541859 + AT_rich Low_complexity Low_complexity 1 48 0 3 1315 588 107 0 0 chr12 95715859 95715962 -25541568 + (GA)n Simple_repeat Simple_repeat 1 103 0 3 1315 393 288 54 64 chr12 95715981 95716185 -25541345 + MLT1B LTR MaLR 180 381 -9 3 1315 280 241 47 87 chr12 95716450 95716577 -25540953 + BC1_Mm scRNA scRNA 1 122 -30 3 1315 461 229 23 11 chr12 95716964 95717141 -25540389 + (CATA)n Simple_repeat Simple_repeat 2 180 0 3 1315 186 43 0 0 chr12 95717373 95717396 -25540134 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1315 348 369 71 84 chr12 95717599 95717824 -25539706 + B4 SINE B4 11 232 -60 3 1315 1109 295 88 52 chr12 95717910 95718465 -25539065 - RMER15 LTR ERVL 0 575 1 3 1315 27 81 0 0 chr12 95718838 95718900 -25538630 + AT_rich Low_complexity Low_complexity 1 62 0 3 1315 661 241 23 0 chr12 95719611 95719744 -25537786 + B1_Mur3 SINE Alu 1 136 -13 3 1315 524 115 10 0 chr12 95719766 95719870 -25537660 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1315 1129 84 0 19 chr12 95720106 95720312 -25537218 + (TC)n Simple_repeat Simple_repeat 1 202 0 3 1315 360 0 0 0 chr12 95720312 95720351 -25537179 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1315 304 366 90 33 chr12 95720590 95720802 -25536728 - RMER15 LTR ERVL -41 534 311 3 1315 9530 151 25 14 chr12 95721595 95724138 -25533392 + Lx LINE L1 4086 6648 -6 3 1315 1001 349 37 32 chr12 95724412 95724977 -25532553 - Lx8 LINE L1 -191 7282 6715 3 1315 273 292 20 30 chr12 95725042 95725141 -25532389 - Lx8 LINE L1 -1078 6395 6298 3 1315 1797 129 14 10 chr12 95725561 95725851 -25531679 + Lx3A LINE L1 6677 6967 -14 3 1315 270 0 0 0 chr12 95725851 95725881 -25531649 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3 1315 306 0 0 0 chr12 95725916 95725950 -25531580 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 3 1315 25941 142 20 5 chr12 95727332 95732674 -25524856 - L1_Mus3 LINE L1 -7 6631 1203 3 1315 1901 119 0 0 chr12 95732673 95732959 -25524571 - L1VL2 LINE L1 -5497 921 636 3 1315 876 236 39 36 chr12 95732968 95733270 -25524260 - L1VL2 LINE L1 -5991 427 2 3 1315 260 326 20 128 chr12 95733886 95733988 -25523542 + B1F2 SINE Alu 7 97 -52 3 1315 225 65 0 0 chr12 95734004 95734035 -25523495 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 3 1315 24 0 0 0 chr12 95734152 95734176 -25523354 + AT_rich Low_complexity Low_complexity 1 24 0 3 1315 295 412 80 29 chr12 95734494 95734769 -25522761 - MLT1E3 LTR MaLR -77 547 259 3 1315 1245 68 0 0 chr12 95735049 95735226 -25522304 + (GAA)n Simple_repeat Simple_repeat 3 179 0 3 1315 585 314 48 38 chr12 95735674 95736044 -25521486 + Lx7 LINE L1 5592 5971 -1673 3 1315 1426 60 15 5 chr12 95736066 95736267 -25521263 + L1Md_F3 LINE L1 6379 6581 -3 3 1315 571 331 26 26 chr12 95736353 95736397 -25521133 + ORR1D2 LTR MaLR 30 73 -297 3 1315 1131 266 44 25 chr12 95736397 95736760 -25520770 + ORR1D1 LTR MaLR 5 374 0 3 1315 571 331 26 26 chr12 95736760 95736907 -25520623 + ORR1D2 LTR MaLR 74 221 -149 3 1315 285 273 57 0 chr12 95736926 95737014 -25520516 + ORR1D2 LTR MaLR 282 374 0 3 1315 1336 291 71 20 chr12 95737121 95737260 -25520270 + Lx7 LINE L1 5188 5332 -548 3 1315 1354 138 66 19 chr12 95737260 95737519 -25520011 + Lx3A LINE L1 6705 6975 -6 3 1315 4440 292 49 20 chr12 95737519 95739422 -25518108 + Lx7 LINE L1 5333 7300 -396 3 1315 219 36 0 0 chr12 95739446 95739474 -25518056 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 3 1315 237 159 0 0 chr12 95739474 95739518 -25518012 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1315 220 207 34 17 chr12 95739529 95739588 -25517942 + T-rich Low_complexity Low_complexity 2 61 0 3 1315 201 39 0 0 chr12 95739624 95739650 -25517880 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 3 1315 203 114 23 0 chr12 95739830 95739874 -25517656 + (CAAAA)n Simple_repeat Simple_repeat 5 49 0 3 1315 240 260 55 0 chr12 95740663 95740736 -25516794 + Lx8 LINE L1 6572 6648 -825 3 1315 2547 134 3 0 chr12 95740800 95741174 -25516356 + Lx LINE L1 5933 6307 -347 3 1315 1722 156 54 29 chr12 95741186 95741536 -25515994 - RMER17D2 LTR ERVK -11 895 537 3 1315 1683 67 9 0 chr12 95741536 95741759 -25515771 + L1_Mus1 LINE L1 6213 6437 -130 3 1315 2184 189 80 19 chr12 95741759 95742283 -25515247 - RMER17D2 LTR ERVK -253 556 1 3 1315 1428 167 142 19 chr12 95742283 95742594 -25514936 + Lx LINE L1 6302 6650 -4 3 1315 1170 55 0 14 chr12 95742692 95742840 -25514690 - B1_Mm SINE Alu 0 147 2 3 1315 668 161 46 13 chr12 95742841 95742992 -25514538 - Lx2 LINE L1 -2 6995 6840 3 1315 482 157 34 34 chr12 95743178 95743297 -25514233 + Lx3B LINE L1 6852 6970 -3 3 1315 365 348 99 38 chr12 95745144 95745356 -25512174 - MLT2B1 LTR ERVL -65 455 231 3 1315 252 0 0 0 chr12 95745359 95745387 -25512143 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 3 1315 233 331 71 24 chr12 95745586 95745713 -25511817 - MLT2B1 LTR ERVL -414 142 10 3 1315 194 0 39 0 chr12 95747161 95747187 -25510343 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 3 1315 282 29 0 0 chr12 95747265 95747300 -25510230 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1315 200 205 0 0 chr12 95748764 95748803 -25508727 + A-rich Low_complexity Low_complexity 2 40 0 3 1315 498 124 200 0 chr12 95749119 95749224 -25508306 + Lx3B LINE L1 6841 6966 -7 3 1315 432 0 0 0 chr12 95749230 95749278 -25508252 + (TAA)n Simple_repeat Simple_repeat 1 48 0 3 1315 289 203 15 15 chr12 95749500 95749565 -25507965 + B1_Mur4 SINE Alu 84 148 -2 3 1315 327 75 61 24 chr12 95749568 95749650 -25507880 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 3 1315 30 77 0 0 chr12 95749650 95749715 -25507815 + AT_rich Low_complexity Low_complexity 1 65 0 3 1315 216 158 0 0 chr12 95750069 95750107 -25507423 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 1315 23 68 0 0 chr12 95750623 95750667 -25506863 + AT_rich Low_complexity Low_complexity 1 44 0 3 1315 7932 18 0 0 chr12 95751017 95751929 -25505601 + L1Md_T LINE L1 4675 5586 -297 3 1315 8979 6 0 0 chr12 95751929 95752925 -25504605 + L1Md_T LINE L1 5587 6582 0 3 1315 23 0 0 0 chr12 95753290 95753313 -25504217 + AT_rich Low_complexity Low_complexity 1 23 0 3 1315 216 67 0 0 chr12 95753793 95753823 -25503707 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1315 240 143 0 0 chr12 95753909 95753951 -25503579 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 3 1315 2910 55 0 0 chr12 95756059 95756426 -25501104 + L1Md_F2 LINE L1 6216 6582 0 3 1315 807 102 0 0 chr12 95756483 95756620 -25500910 + (GA)n Simple_repeat Simple_repeat 2 138 0 3 1315 711 316 67 45 chr12 95756742 95757077 -25500453 + MTEb LTR MaLR 43 357 -2 3 1315 809 284 123 3 chr12 95757185 95757559 -25499971 + MTD LTR MaLR 1 419 0 3 1315 459 0 0 0 chr12 95757812 95757863 -25499667 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1315 219 88 0 0 chr12 95758075 95758109 -25499421 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 1315 1971 102 3 64 chr12 95759308 95759654 -25497876 + L1_Mus4 LINE L1 6304 6628 -8 3 1315 947 276 60 29 chr12 95760297 95760667 -25496863 - RLTR18B LTR ERVK -22 490 130 3 1315 745 246 105 82 chr12 95760636 95760893 -25496637 - RLTR18B LTR ERVK -311 305 43 3 1315 3013 200 110 53 chr12 95760894 95761779 -25495751 - RLTR25B LTR ERVK 0 1028 1 3 1315 25 31 0 0 chr12 95761838 95761870 -25495660 + AT_rich Low_complexity Low_complexity 1 32 0 3 1315 396 383 73 21 chr12 95761936 95762128 -25495402 - ID_B1 SINE B4 -1 223 22 3 1315 37 39 0 0 chr12 95762689 95762740 -25494790 + AT_rich Low_complexity Low_complexity 1 51 0 3 1315 1290 257 75 9 chr12 95763174 95763523 -25494007 + ORR1B1 LTR MaLR 3 374 -20 3 1315 207 0 0 0 chr12 95763523 95763546 -25493984 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1315 430 339 59 38 chr12 95763871 95764107 -25493423 + Lx5 LINE L1 6123 6363 -687 4 1315 773 343 56 10 chr12 95764093 95764396 -25493134 + Lx5 LINE L1 6466 6782 -268 4 1315 354 176 0 0 chr12 95764583 95764668 -25492862 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1315 3912 39 25 0 chr12 95764944 95765426 -25492104 - L1Md_T LINE L1 0 6582 6089 4 1315 22 35 0 0 chr12 95765532 95765561 -25491969 + AT_rich Low_complexity Low_complexity 1 29 0 4 1315 387 0 0 0 chr12 95766211 95766254 -25491276 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1315 1535 198 86 8 chr12 95766854 95767205 -25490325 - ORR1C1 LTR MaLR 0 378 1 4 1315 300 161 0 0 chr12 95767213 95767275 -25490255 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1315 5033 202 103 44 chr12 95767350 95768606 -25488924 + RLTR21 LTR ERVK 10 1289 -283 4 1315 780 32 0 0 chr12 95768606 95768701 -25488829 + (TG)n Simple_repeat Simple_repeat 2 96 0 4 1315 5033 210 84 66 chr12 95768701 95768855 -25488675 + RLTR21 LTR ERVK 1253 1453 -119 4 1315 22 0 0 0 chr12 95769166 95769188 -25488342 + AT_rich Low_complexity Low_complexity 1 22 0 4 1315 272 376 71 0 chr12 95769611 95769696 -25487834 + PB1D10 SINE Alu 1 91 -26 4 1315 1528 221 190 65 chr12 95770043 95770644 -25486886 + RMER6C LTR ERVK 15 690 0 4 1315 236 213 0 0 chr12 95771280 95771327 -25486203 + T-rich Low_complexity Low_complexity 1 47 0 4 1315 389 309 102 27 chr12 95772186 95772372 -25485158 - MIRb SINE MIR -32 236 37 4 1315 568 341 67 30 chr12 95772483 95772782 -25484748 + Tigger9b DNA MER2_type 1 310 -314 4 1315 332 328 101 39 chr12 95772990 95773298 -25484232 + L1M4c LINE L1 1658 1984 -4400 4 1315 30 45 0 0 chr12 95773298 95773342 -25484188 + AT_rich Low_complexity Low_complexity 1 44 0 4 1315 198 0 0 0 chr12 95773342 95773364 -25484166 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1315 319 234 8 51 chr12 95773365 95773482 -25484048 - RMER1A Other Other -33 997 886 4 1315 1937 93 46 3 chr12 95773493 95773795 -25483735 + IAPEY2_LTR LTR ERVK 33 347 -10 4 1315 3153 228 48 93 chr12 95773798 95774815 -25482715 - RMER1A Other Other -151 879 5 4 1315 4461 244 54 29 chr12 95774993 95776115 -25481415 + Lx7 LINE L1 50 1204 -6524 4 1315 219 36 0 0 chr12 95776115 95776143 -25481387 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1315 4461 184 45 29 chr12 95776143 95776563 -25480967 + Lx7 LINE L1 1205 1631 -4249 4 1315 5780 201 21 23 chr12 95776561 95777358 -25480172 + Lx7 LINE L1 4256 5048 -832 4 1315 252 0 0 0 chr12 95777358 95777386 -25480144 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1315 5780 201 21 23 chr12 95777386 95777940 -25479590 + Lx7 LINE L1 5049 5605 -275 4 1315 4230 212 27 45 chr12 95777941 95778836 -25478694 + RMER19B LTR ERVK 4 882 -20 4 1315 525 172 50 36 chr12 95778842 95778981 -25478549 + Lx2A1 LINE L1 6863 7003 -5 4 1315 778 167 0 8 chr12 95779012 95779145 -25478385 - Lx2B LINE L1 -637 6363 6232 4 1315 2168 176 3 3 chr12 95779148 95779513 -25478017 + Lx2B LINE L1 6387 6751 -249 4 1315 3123 280 114 14 chr12 95779520 95780695 -25476835 + Lx7 LINE L1 5861 7152 -544 4 1315 1963 137 41 18 chr12 95780707 95781049 -25476481 + MTB_Mm LTR MaLR 1 350 -57 4 1315 501 301 38 91 chr12 95781090 95781199 -25476331 + Lx7 LINE L1 7162 7254 -442 4 1315 279 0 0 0 chr12 95781199 95781230 -25476300 + (TTA)n Simple_repeat Simple_repeat 1 31 0 4 1315 3227 149 43 27 chr12 95781230 95781816 -25475714 - Lx LINE L1 -16 6638 6044 4 1315 501 301 38 91 chr12 95781816 95782125 -25475405 + Lx7 LINE L1 7255 7558 -138 4 1315 313 262 39 62 chr12 95782559 95782689 -25474841 + L1MEe LINE L1 391 517 -4337 4 1315 1048 109 0 7 chr12 95782715 95782726 -25474804 - B1_Mus1 SINE Alu 0 148 138 4 1315 258 32 0 0 chr12 95782726 95782757 -25474773 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1315 1048 109 0 7 chr12 95782757 95782893 -25474637 - B1_Mus1 SINE Alu -11 137 3 4 1315 310 300 62 62 chr12 95783277 95783437 -25474093 + B2_Mm2 SINE B2 1 160 -35 4 1315 471 363 5 9 chr12 95785399 95785613 -25471917 + Lx8 LINE L1 6707 6919 -554 4 1315 341 309 120 16 chr12 95785620 95785745 -25471785 - B1_Mus1 SINE Alu 0 148 11 4 1315 1523 194 112 32 chr12 95785777 95786117 -25471413 - ORR1B2 LTR MaLR 0 367 1 4 1315 563 337 129 15 chr12 95786146 95786556 -25470974 + Lx8 LINE L1 6973 7429 -44 4 1315 23 54 0 0 chr12 95787168 95787205 -25470325 + AT_rich Low_complexity Low_complexity 1 37 0 4 1315 34174 48 8 3 chr12 95788187 95793382 -25464148 + L1Md_T LINE L1 271 5589 -297 4 1315 8398 36 0 0 chr12 95793382 95794376 -25463154 + L1Md_T LINE L1 5590 6583 -2 4 1315 428 299 58 16 chr12 95795272 95795462 -25462068 - MER33 DNA MER1_type -1 323 126 4 1315 217 184 0 20 chr12 95796479 95796529 -25461001 + (TAA)n Simple_repeat Simple_repeat 2 50 0 4 1315 279 0 0 0 chr12 95796995 95797026 -25460504 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1315 239 317 57 24 chr12 95801055 95801178 -25456352 - Lx7 LINE L1 -349 7347 7221 4 1315 309 48 0 23 chr12 95801199 95801242 -25456288 + L1_Mur1 LINE L1 5526 5567 -319 4 1315 2764 107 2 4 chr12 95801230 95801672 -25455858 - Lx3A LINE L1 -993 5988 5550 4 1315 5297 100 4 3 chr12 95802040 95802814 -25454716 - Lx3A LINE L1 -322 5564 4790 4 1315 2763 178 71 45 chr12 95802814 95803479 -25454051 + RMER6C LTR ERVK 9 690 0 4 1315 287 113 16 0 chr12 95803592 95803654 -25453876 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 4 1315 1208 61 0 0 chr12 95803656 95803803 -25453727 - B1_Mm SINE Alu 0 147 1 4 1315 32 43 0 0 chr12 95804161 95804207 -25453323 + AT_rich Low_complexity Low_complexity 1 46 0 4 1315 546 86 0 0 chr12 95804801 95804882 -25452648 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 1315 206 214 0 0 chr12 95804882 95804924 -25452606 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1315 22 0 0 0 chr12 95805096 95805118 -25452412 + AT_rich Low_complexity Low_complexity 1 22 0 4 1315 831 310 51 18 chr12 95805526 95805920 -25451610 + Lx9 LINE L1 7058 7464 -180 4 1315 553 256 0 159 chr12 95806570 95806784 -25450746 - RMER2 LTR ERV1 -164 403 224 4 1315 370 117 33 0 chr12 95806788 95806848 -25450682 - RMER2 LTR ERV1 -505 62 1 4 1315 3775 189 155 30 chr12 95806987 95808013 -25449517 + L1_Mur2 LINE L1 915 2048 -3829 4 1315 207 69 0 0 chr12 95808013 95808042 -25449488 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1315 3775 190 116 43 chr12 95808042 95808312 -25449218 + L1_Mur2 LINE L1 2049 2354 -3523 4 1315 27 73 0 0 chr12 95808361 95808416 -25449114 + AT_rich Low_complexity Low_complexity 1 55 0 4 1315 22 0 0 0 chr12 95808898 95808920 -25448610 + AT_rich Low_complexity Low_complexity 1 22 0 4 1315 378 91 0 0 chr12 95809052 95809107 -25448423 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1315 268 277 9 38 chr12 95809304 95809409 -25448121 - L1M2 LINE L1 -1491 4652 4551 4 1315 253 402 42 30 chr12 95809496 95809760 -25447770 - LTR16E1 LTR ERVL -9 529 263 4 1315 738 154 0 0 chr12 95810502 95810632 -25446898 + (TA)n Simple_repeat Simple_repeat 1 130 0 4 1315 257 297 33 0 chr12 95811073 95811164 -25446366 + MER94 DNA AcHobo 33 126 -8 4 1315 23 68 0 0 chr12 95811495 95811539 -25445991 + AT_rich Low_complexity Low_complexity 1 44 0 4 1315 204 111 0 0 chr12 95812248 95812284 -25445246 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1315 626 224 42 7 chr12 95812285 95812429 -25445101 - B1_Mur3 SINE Alu 0 149 1 4 1316 5413 63 1 3 chr12 95813711 95814407 -25443123 - L1Md_F2 LINE L1 -12 6570 5876 4 1316 180 0 0 0 chr12 95814509 95814529 -25443001 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1316 392 55 0 18 chr12 95814926 95814982 -25442548 + (CTA)n Simple_repeat Simple_repeat 1 55 0 4 1316 23 33 0 0 chr12 95815460 95815490 -25442040 + AT_rich Low_complexity Low_complexity 1 30 0 4 1316 441 66 0 0 chr12 95815564 95815625 -25441905 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1316 25 65 0 0 chr12 95816020 95816066 -25441464 + AT_rich Low_complexity Low_complexity 1 46 0 4 1316 337 54 36 0 chr12 95816475 95816531 -25440999 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 4 1316 495 260 8 16 chr12 95817031 95817160 -25440370 - Lx5 LINE L1 -500 6550 6423 4 1316 1028 303 11 4 chr12 95817139 95817404 -25440126 + Lx5 LINE L1 6768 7034 -16 4 1316 252 0 0 0 chr12 95817404 95817432 -25440098 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 4 1316 740 11 11 0 chr12 95817646 95817735 -25439795 + (GAA)n Simple_repeat Simple_repeat 1 90 0 4 1316 411 21 0 0 chr12 95818024 95818072 -25439458 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1316 348 24 0 0 chr12 95818207 95818248 -25439282 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1316 378 0 0 0 chr12 95818307 95818349 -25439181 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1316 447 52 0 0 chr12 95818349 95818406 -25439124 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1316 528 16 0 0 chr12 95818955 95819016 -25438514 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1316 34 65 0 0 chr12 95819018 95819080 -25438450 + AT_rich Low_complexity Low_complexity 1 62 0 4 1316 704 296 141 38 chr12 95819540 95819831 -25437699 + ORR1D1 LTR MaLR 1 321 -53 4 1316 3574 60 0 0 chr12 95820720 95821169 -25436361 + L1Md_F2 LINE L1 5136 5584 -299 4 1316 7965 49 2 2 chr12 95821172 95822172 -25435358 + L1Md_F2 LINE L1 5588 6582 0 4 1316 7965 49 2 2 chr12 95822172 95822192 -25435338 + L1Md_F2 LINE L1 6561 6581 -1 4 1316 413 301 13 71 chr12 95823486 95823640 -25433890 + B4A SINE B4 148 292 0 4 1316 316 340 11 11 chr12 95824578 95824673 -25432857 + B4A SINE B4 188 282 -10 4 1316 21 57 0 0 chr12 95826142 95826177 -25431353 + AT_rich Low_complexity Low_complexity 1 35 0 4 1316 463 206 97 60 chr12 95826318 95826448 -25431082 - Lx9 LINE L1 0 7644 7517 4 1316 324 70 0 0 chr12 95826448 95826491 -25431039 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1316 463 206 97 60 chr12 95826491 95826577 -25430953 - Lx9 LINE L1 -128 7516 7420 4 1316 241 324 92 20 chr12 95827679 95827831 -25429699 + B3 SINE B2 25 216 0 4 1316 315 0 0 0 chr12 95828056 95828091 -25429439 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1316 238 26 51 0 chr12 95828175 95828214 -25429316 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1316 6408 38 0 0 chr12 95828226 95828994 -25428536 - L1Md_F2 LINE L1 -8 6574 5807 4 1316 316 322 51 82 chr12 95829044 95829240 -25428290 - B3A SINE B2 0 198 9 4 1316 1515 158 48 11 chr12 95829371 95829640 -25427890 + Lx3A LINE L1 6694 6972 -9 4 1316 26 30 0 0 chr12 95829657 95829690 -25427840 + AT_rich Low_complexity Low_complexity 1 33 0 4 1316 332 233 33 16 chr12 95829692 95829814 -25427716 + (TATG)n Simple_repeat Simple_repeat 1 124 0 4 1316 631 257 0 22 chr12 95829841 95829980 -25427550 - B3A SINE B2 -62 136 1 4 1316 5708 154 73 13 chr12 95830949 95832009 -25425521 - Lx2B LINE L1 -10 6990 5868 4 1316 36 53 0 0 chr12 95832894 95832951 -25424579 + AT_rich Low_complexity Low_complexity 1 57 0 4 1316 198 71 0 0 chr12 95832982 95833010 -25424520 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1316 1169 81 0 0 chr12 95833320 95833468 -25424062 + B1_Mus1 SINE Alu 1 148 0 5 1316 218 281 0 50 chr12 95833510 95833570 -25423960 + PB1D10 SINE Alu 33 89 -28 5 1316 1056 136 0 0 chr12 95833632 95833808 -25423722 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 5 1316 209 146 21 0 chr12 95833813 95833861 -25423669 + GA-rich Low_complexity Low_complexity 2 50 0 5 1316 972 197 46 23 chr12 95833903 95834121 -25423409 + ORR1B1 LTR MaLR 3 225 -169 5 1316 487 233 66 41 chr12 95834158 95834279 -25423251 - B1_Mur3 SINE Alu -7 142 19 5 1316 22 35 0 0 chr12 95835621 95835650 -25421880 + AT_rich Low_complexity Low_complexity 1 29 0 5 1316 557 129 40 0 chr12 95835684 95835785 -25421745 - L1_Mus2 LINE L1 -3 6563 6459 5 1316 249 57 0 0 chr12 95836930 95836965 -25420565 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1316 632 265 36 68 chr12 95837024 95837303 -25420227 + RMER15 LTR ERVL 306 575 0 5 1316 1777 189 94 11 chr12 95837419 95837793 -25419737 - RMER15 LTR ERVL -105 470 66 5 1316 1285 49 0 0 chr12 95837867 95838031 -25419499 + B2_Mm1a SINE B2 1 164 -29 5 1316 267 133 0 0 chr12 95839985 95840030 -25417500 + (TTA)n Simple_repeat Simple_repeat 1 45 0 5 1316 5129 136 31 1 chr12 95840034 95840873 -25416657 - Lx3B LINE L1 -4 6969 6106 5 1316 202 224 0 0 chr12 95841378 95841427 -25416103 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5 1316 363 322 78 47 chr12 95841450 95841642 -25415888 + B3A SINE B2 1 198 0 5 1316 1783 117 59 0 chr12 95841768 95842041 -25415489 + Lx3A LINE L1 6616 6904 -77 5 1316 243 88 0 0 chr12 95842111 95842145 -25415385 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1316 327 316 23 28 chr12 95842210 95842386 -25415144 + Lx9 LINE L1 7316 7490 -154 5 1316 375 324 65 33 chr12 95842646 95842761 -25414769 + RSINE1 SINE B4 6 124 -41 5 1316 420 37 0 0 chr12 95842761 95842815 -25414715 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1316 375 324 65 33 chr12 95842815 95842852 -25414678 + RSINE1 SINE B4 125 163 -2 5 1316 504 32 0 0 chr12 95843306 95843368 -25414162 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1316 318 26 0 0 chr12 95844822 95844861 -25412669 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1316 21 36 0 0 chr12 95845336 95845364 -25412166 + AT_rich Low_complexity Low_complexity 1 28 0 5 1316 240 330 0 20 chr12 95845964 95846063 -25411467 + GA-rich Low_complexity Low_complexity 3 99 0 5 1316 23 54 0 0 chr12 95846421 95846458 -25411072 + AT_rich Low_complexity Low_complexity 1 37 0 5 1316 2881 74 51 0 chr12 95846458 95846849 -25410681 + RLTR10A LTR ERVK 1 411 0 5 1316 225 320 58 58 chr12 95847145 95847248 -25410282 - RLTR25A LTR ERVK -481 622 520 5 1316 548 229 19 0 chr12 95847171 95847276 -25410254 - B1_Mus1 SINE Alu -27 121 15 5 1316 2166 63 0 0 chr12 95848081 95848349 -25409181 + L1Md_F2 LINE L1 5317 5584 -299 5 1316 7670 58 2 23 chr12 95848352 95849388 -25408142 + L1Md_F2 LINE L1 5588 6582 0 5 1316 28 29 0 0 chr12 95849840 95849875 -25407655 + AT_rich Low_complexity Low_complexity 1 35 0 5 1316 769 291 5 22 chr12 95850269 95850513 -25407017 + ORR1E LTR MaLR 2 232 -138 5 1316 235 267 0 0 chr12 95851198 95851258 -25406272 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1316 609 308 20 25 chr12 95851355 95851558 -25405972 - B4 SINE B4 -89 203 2 5 1316 1705 48 0 69 chr12 95852707 95852967 -25404563 + L1Md_F3 LINE L1 6345 6584 0 5 1316 1705 48 0 69 chr12 95852967 95852983 -25404547 + L1Md_F3 LINE L1 6560 6574 -10 5 1316 32 26 0 0 chr12 95853215 95853254 -25404276 + AT_rich Low_complexity Low_complexity 1 39 0 5 1316 7455 68 26 0 chr12 95853279 95854329 -25403201 - L1_Mus1 LINE L1 -1 6566 5495 5 1316 22 35 0 0 chr12 95855230 95855259 -25402271 + AT_rich Low_complexity Low_complexity 1 29 0 5 1316 207 0 0 0 chr12 95855416 95855439 -25402091 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1316 569 278 53 14 chr12 95855555 95855836 -25401694 - L1MA4 LINE L1 -291 6009 5718 5 1316 36540 33 1 0 chr12 95855837 95861110 -25396420 - L1Md_T LINE L1 0 6582 1378 5 1316 29 0 0 0 chr12 95861295 95861324 -25396206 + AT_rich Low_complexity Low_complexity 1 29 0 5 1316 24 67 0 0 chr12 95862594 95862639 -25394891 + AT_rich Low_complexity Low_complexity 1 45 0 5 1316 227 29 57 0 chr12 95862692 95862727 -25394803 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5 1316 3786 41 9 0 chr12 95862735 95863198 -25394332 - L1Md_F3 LINE L1 -14 6570 6104 5 1316 297 352 54 42 chr12 95863209 95863375 -25394155 - B4 SINE B4 -123 169 2 5 1316 27 29 0 0 chr12 95863497 95863531 -25393999 + AT_rich Low_complexity Low_complexity 1 34 0 5 1316 1212 88 16 27 chr12 95863853 95864040 -25393490 + B2_Mm2 SINE B2 1 185 -10 5 1316 180 0 0 0 chr12 95865189 95865209 -25392321 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1316 378 0 0 0 chr12 95865699 95865741 -25391789 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1316 299 176 0 0 chr12 95865753 95865804 -25391726 - Lx7 LINE L1 -393 7303 7253 5 1316 1257 305 37 21 chr12 95865840 95866356 -25391174 + Lx7 LINE L1 6655 7178 -518 5 1316 230 0 33 0 chr12 95867128 95867158 -25390372 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1316 722 312 98 87 chr12 95867323 95868077 -25389453 + RMER13A LTR ERVK 1 806 -102 5 1316 198 0 0 0 chr12 95868240 95868262 -25389268 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1316 362 322 86 73 chr12 95869104 95869476 -25388054 + L1MEf LINE L1 1258 1634 -4566 5 1316 292 240 129 52 chr12 95869619 95869852 -25387678 + L1MEf LINE L1 1841 2091 -4109 5 1316 385 348 67 79 chr12 95869938 95870178 -25387352 - B4A SINE B4 -55 237 1 5 1316 232 299 114 11 chr12 95870296 95870384 -25387146 - RSINE1 SINE B4 -5 160 64 5 1316 972 258 103 10 chr12 95870405 95870706 -25386824 - ORR1D2 LTR MaLR 0 370 42 5 1316 266 330 68 21 chr12 95871258 95871450 -25386080 + L1ME3A LINE L1 5973 6173 0 5 1316 2784 23 20 6 chr12 95871965 95872309 -25385221 - L1Md_F3 LINE L1 -14 6570 6222 5 1316 4518 34 22 0 chr12 95872309 95872864 -25384666 + L1Md_F3 LINE L1 5625 6191 -393 5 1316 1050 99 0 0 chr12 95872896 95873038 -25384492 + B1_Mus1 SINE Alu 1 142 -6 5 1316 1003 123 12 6 chr12 95873055 95873227 -25384303 + (GGAAA)n Simple_repeat Simple_repeat 4 176 0 5 1316 1147 31 12 42 chr12 95873376 95873543 -25383987 - L1Md_F3 LINE L1 0 6584 6423 5 1316 595 30 0 0 chr12 95873543 95873610 -25383920 + L1Md_F3 LINE L1 6344 6410 -174 5 1316 189 160 157 20 chr12 95875188 95875239 -25382291 - MIRb SINE MIR -166 102 45 5 1316 2251 195 33 11 chr12 95876667 95877123 -25380407 + RMER4A LTR ERVK 1 466 0 5 1316 1160 55 0 0 chr12 95877135 95877280 -25380250 - B1_Mm SINE Alu -1 146 2 5 1316 3122 37 0 0 chr12 95877301 95877677 -25379853 - L1Md_T LINE L1 0 6582 6207 5 1316 343 341 171 47 chr12 95877891 95878125 -25379405 + B4 SINE B4 12 274 -18 5 1316 23 0 0 0 chr12 95879190 95879213 -25378317 + AT_rich Low_complexity Low_complexity 1 23 0 5 1316 447 354 19 0 chr12 95879367 95879528 -25378002 + B3A SINE B2 1 164 -34 5 1316 2215 281 75 10 chr12 95879882 95880693 -25376837 + Lx9 LINE L1 6738 7601 -43 5 1316 369 269 110 43 chr12 95880836 95880999 -25376531 - MTEb LTR MaLR -205 174 1 5 1316 23 54 0 0 chr12 95881296 95881333 -25376197 + AT_rich Low_complexity Low_complexity 1 37 0 5 1316 189 259 93 0 chr12 95881720 95881774 -25375756 + L2 LINE L2 2713 2771 -648 5 1316 3911 126 9 6 chr12 95881843 95882473 -25375057 + L1_Mus3 LINE L1 6004 6635 -3 5 1316 571 314 58 0 chr12 95882598 95882770 -25374760 - ID_B1 SINE B4 -34 190 9 5 1316 21 36 0 0 chr12 95882999 95883027 -25374503 + AT_rich Low_complexity Low_complexity 1 28 0 5 1316 225 310 0 0 chr12 95883786 95883844 -25373686 + CT-rich Low_complexity Low_complexity 3 60 0 5 1316 5888 216 64 16 chr12 95883905 95885238 -25372292 - Lx5 LINE L1 0 7050 5654 5 1316 1122 83 0 0 chr12 95885239 95885384 -25372146 + B1_Mus1 SINE Alu 1 145 -3 5 1316 522 0 0 0 chr12 95885384 95885442 -25372088 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1316 261 98 0 0 chr12 95885443 95885484 -25372046 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1316 387 0 0 0 chr12 95885645 95885688 -25371842 + (CCTAA)n Simple_repeat Simple_repeat 4 46 0 5 1316 180 0 0 0 chr12 95885893 95885913 -25371617 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1316 608 376 65 60 chr12 95886013 95886564 -25370966 + MLT2B3 LTR ERVL 1 554 0 5 1316 891 45 0 0 chr12 95887470 95887582 -25369948 + (TA)n Simple_repeat Simple_repeat 2 113 0 5 1316 428 333 41 41 chr12 95887768 95887937 -25369593 - B4A SINE B4 -77 215 47 5 1316 2036 227 8 0 chr12 95888073 95888456 -25369074 - Lx5 LINE L1 -153 6897 6512 5 1316 195 42 0 0 chr12 95888810 95888834 -25368696 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1316 564 29 0 0 chr12 95889076 95889146 -25368384 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 1316 1032 80 14 0 chr12 95889177 95889315 -25368215 + B1_Mus1 SINE Alu 1 140 -8 5 1316 198 0 0 0 chr12 95889328 95889350 -25368180 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1316 333 279 45 0 chr12 95889586 95889697 -25367833 - Lx8 LINE L1 -101 7372 7257 5 1316 393 39 0 0 chr12 95891124 95891175 -25366355 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 1316 399 291 86 0 chr12 95891196 95891313 -25366217 + Lx6 LINE L1 7246 7372 -88 5 1316 274 297 0 0 chr12 95891563 95891627 -25365903 + MLT1A0 LTR MaLR 236 299 -66 5 1316 491 224 17 8 chr12 95891682 95891799 -25365731 + PB1D9 SINE Alu 2 119 -1 5 1316 207 100 0 0 chr12 95891799 95891829 -25365701 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 5 1316 459 337 47 0 chr12 95892410 95892665 -25364865 + L1MA4 LINE L1 5315 5581 -710 5 1316 380 306 31 20 chr12 95892739 95892942 -25364588 + L1MA4 LINE L1 5715 5919 -393 5 1316 445 17 0 0 chr12 95892996 95893056 -25364474 - B2_Mm1t SINE B2 -4 189 130 6 1316 228 28 0 27 chr12 95893056 95893093 -25364437 - L1Md_T LINE L1 -13 6569 6534 6 1316 1332 286 32 0 chr12 95893367 95893710 -25363820 + MTEb LTR MaLR 1 354 -25 6 1316 866 254 29 0 chr12 95894165 95894370 -25363160 - B3 SINE B2 -4 212 2 6 1316 593 280 0 0 chr12 95894462 95894587 -25362943 - B1_Mur1 SINE Alu -5 144 20 6 1316 255 349 60 23 chr12 95894928 95895145 -25362385 - MLT1B LTR MaLR -165 225 1 6 1316 232 220 40 0 chr12 95897710 95897760 -25359770 - L1M2c LINE L1 -6412 377 326 6 1316 1277 246 64 27 chr12 95897794 95898200 -25359330 - MTC LTR MaLR 0 421 1 6 1316 1000 340 51 21 chr12 95898219 95898649 -25358881 - MTE-int LTR MaLR -143 1437 995 6 1316 227 306 0 0 chr12 95899181 95899243 -25358287 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1316 2723 94 39 0 chr12 95899913 95900329 -25357201 - L1Md_A LINE L1 -6140 584 153 6 1316 1171 343 74 16 chr12 95900334 95901013 -25356517 + Lx8 LINE L1 6158 6875 -598 6 1316 568 40 0 51 chr12 95901058 95901137 -25356393 - MTB LTR MaLR -2 398 324 6 1316 265 200 22 0 chr12 95901228 95901273 -25356257 - B4A SINE B4 -230 62 17 6 1316 1169 48 7 0 chr12 95901322 95901467 -25356063 + B1_Mm SINE Alu 2 147 0 6 1316 603 318 64 23 chr12 95903025 95903289 -25354241 + RMER15 LTR ERVL 276 550 -25 6 1316 22 0 0 0 chr12 95905306 95905328 -25352202 + AT_rich Low_complexity Low_complexity 1 22 0 6 1316 3368 138 0 78 chr12 95905449 95906091 -25351439 - Lx3C LINE L1 -437 6539 5948 6 1316 2557 143 31 5 chr12 95906095 95906517 -25351013 + Lx3C LINE L1 6542 6974 -2 6 1316 378 61 0 0 chr12 95906959 95907008 -25350522 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1316 2012 197 23 14 chr12 95907010 95907443 -25350087 - Lx4B LINE L1 -16 7042 6606 6 1316 333 0 0 0 chr12 95907457 95907494 -25350036 + (TAA)n Simple_repeat Simple_repeat 2 38 0 6 1316 480 18 0 0 chr12 95907615 95907672 -25349858 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1316 1402 38 0 56 chr12 95907803 95908001 -25349529 + L1Md_F3 LINE L1 6384 6570 -14 6 1316 234 0 0 0 chr12 95908491 95908517 -25349013 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1316 308 262 35 23 chr12 95908687 95908773 -25348757 - BC1_Mm scRNA scRNA -65 87 1 6 1316 5535 77 3 5 chr12 95908825 95909567 -25347963 + L1Md_F2 LINE L1 5841 6580 -2 6 1316 195 69 0 0 chr12 95909573 95909602 -25347928 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1316 951 99 0 0 chr12 95909784 95909925 -25347605 + (TC)n Simple_repeat Simple_repeat 1 141 0 6 1316 332 0 0 44 chr12 95912547 95912592 -25344938 + (CAA)n Simple_repeat Simple_repeat 2 44 0 6 1316 315 0 0 0 chr12 95913537 95913572 -25343958 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1316 25 51 0 0 chr12 95913939 95913978 -25343552 + AT_rich Low_complexity Low_complexity 1 39 0 6 1316 305 326 83 0 chr12 95914370 95914514 -25343016 - RSINE1 SINE B4 -6 159 4 6 1316 1418 319 36 23 chr12 95914802 95915364 -25342166 + Lx7 LINE L1 6615 7183 -513 6 1316 266 340 70 14 chr12 95916006 95916149 -25341381 - MIR SINE MIR -94 168 18 6 1316 243 146 0 0 chr12 95916455 95916510 -25341020 + (T)n Simple_repeat Simple_repeat 1 55 0 6 1316 565 285 38 70 chr12 95916578 95916763 -25340767 - B3A SINE B2 -6 192 14 6 1316 327 130 0 0 chr12 95916790 95916844 -25340686 + (TTA)n Simple_repeat Simple_repeat 2 55 0 6 1316 1518 176 15 27 chr12 95917681 95918013 -25339517 - L1_Mur2 LINE L1 -1421 4456 4129 6 1316 4500 182 14 56 chr12 95918012 95919560 -25337970 + Lx5 LINE L1 5025 6537 -513 6 1316 257 218 0 65 chr12 95919553 95919646 -25337884 + Lx5 LINE L1 6968 7054 -4 6 1316 182 274 15 46 chr12 95920880 95920945 -25336585 + L3 LINE CR1 4119 4181 -308 6 1316 180 0 0 0 chr12 95921140 95921160 -25336370 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1316 23 33 0 0 chr12 95921550 95921580 -25335950 + AT_rich Low_complexity Low_complexity 1 30 0 6 1316 564 344 35 49 chr12 95923066 95923292 -25334238 - ID_B1 SINE B4 0 224 2 6 1316 2472 184 123 62 chr12 95923316 95923895 -25333635 - RMER20B LTR ERVK -11 616 3 6 1316 3520 253 87 28 chr12 95923926 95924913 -25332617 - RMER1B Other Other -2 1064 20 6 1316 952 269 84 62 chr12 95925041 95925410 -25332120 + MTD LTR MaLR 25 401 -18 6 1316 184 77 25 25 chr12 95925576 95925616 -25331914 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 6 1316 3948 81 0 6 chr12 95925627 95926147 -25331383 - L1_Mus1 LINE L1 -3 6564 6048 6 1316 2395 281 62 65 chr12 95926206 95926822 -25330708 + Lx6 LINE L1 6585 7240 -220 6 1316 2391 39 10 3 chr12 95926822 95927128 -25330402 + L1Md_F2 LINE L1 6275 6582 0 6 1316 2395 281 62 65 chr12 95927128 95927376 -25330154 + Lx6 LINE L1 7241 7446 -14 6 1316 3652 196 76 49 chr12 95927380 95927634 -25329896 - RLTR25A LTR ERVK 0 1103 847 6 1316 652 12 0 0 chr12 95927634 95927716 -25329814 + L1Md_T LINE L1 6501 6582 0 6 1316 3652 196 76 49 chr12 95927716 95928364 -25329166 - RLTR25A LTR ERVK -257 846 176 6 1316 243 0 0 0 chr12 95928899 95928926 -25328604 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1316 272 25 0 48 chr12 95928932 95928974 -25328556 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1316 927 217 37 5 chr12 95930148 95930366 -25327164 + URR1B DNA MER1_type 1 225 0 6 1316 243 0 0 0 chr12 95930478 95930505 -25327025 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1316 858 109 0 0 chr12 95930765 95930893 -25326637 + (TTTC)n Simple_repeat Simple_repeat 1 128 0 6 1316 2553 60 8 3 chr12 95930903 95931257 -25326273 - BGLII LTR ERVK -64 357 2 6 1316 2971 128 12 12 chr12 95931714 95932197 -25325333 - L1_Mus3 LINE L1 0 6638 6156 6 1316 263 250 0 30 chr12 95932235 95932296 -25325234 - MTEb LTR MaLR -12 367 309 6 1316 735 182 8 0 chr12 95932296 95932422 -25325108 + RLTR12A LTR ERVK 1 127 -441 6 1316 3265 50 0 0 chr12 95932422 95932909 -25324621 - L1_Mus2 LINE L1 -589 5977 5491 6 1316 4442 68 16 2 chr12 95932909 95933483 -25324047 + L1_Mus2 LINE L1 5984 6565 -1 6 1316 1773 212 85 21 chr12 95933487 95933911 -25323619 + RLTR12A LTR ERVK 117 567 -1 6 1316 269 297 0 39 chr12 95933939 95934016 -25323514 - MTD LTR MaLR -64 355 282 6 1316 469 307 105 11 chr12 95934234 95934415 -25323115 - MTD LTR MaLR -221 198 1 6 1316 273 398 120 6 chr12 95935136 95935303 -25322227 - ORR1E LTR MaLR -173 186 1 6 1316 249 315 35 84 chr12 95935315 95935457 -25322073 - MTE-int LTR MaLR -67 1513 1379 6 1316 222 167 0 85 chr12 95935510 95935569 -25321961 + A-rich Low_complexity Low_complexity 1 54 0 6 1316 3247 48 0 0 chr12 95935587 95935980 -25321550 - L1_Mus2 LINE L1 0 5883 5491 6 1316 4450 68 16 2 chr12 95935980 95936555 -25320975 + L1_Mus2 LINE L1 5984 6566 0 6 1316 1773 212 85 21 chr12 95936559 95936983 -25320547 + RLTR12A LTR ERVK 117 567 -1 6 1316 279 284 0 39 chr12 95937011 95937088 -25320442 - MTD LTR MaLR -64 355 282 6 1316 469 307 105 11 chr12 95937306 95937487 -25320043 - MTD LTR MaLR -221 198 1 6 1316 273 398 120 6 chr12 95938208 95938375 -25319155 - ORR1E LTR MaLR -173 186 1 6 1316 249 315 35 84 chr12 95938387 95938529 -25319001 - MTEb-int LTR MaLR -67 1513 1379 6 1316 222 167 0 85 chr12 95938582 95938641 -25318889 + A-rich Low_complexity Low_complexity 1 54 0 6 1316 6953 13 0 0 chr12 95938659 95939453 -25318077 - L1Md_T LINE L1 0 5883 5090 6 1316 5634 40 0 1 chr12 95939453 95940133 -25317397 + L1Md_T LINE L1 5904 6582 0 6 1316 387 198 0 0 chr12 95940164 95940204 -25317326 + A-rich Low_complexity Low_complexity 1 40 0 6 1316 1139 88 0 0 chr12 95940204 95940352 -25317178 + B1_Mus1 SINE Alu 1 148 0 6 1316 387 198 0 0 chr12 95940352 95940402 -25317128 + A-rich Low_complexity Low_complexity 41 90 0 6 1316 511 331 22 78 chr12 95940405 95940585 -25316945 + B3A SINE B2 2 171 -27 6 1316 979 226 19 105 chr12 95940752 95941019 -25316511 + ORR1A4 LTR MaLR 3 246 -83 6 1316 236 154 0 55 chr12 95941018 95941073 -25316457 - ORR1A4 LTR MaLR -277 52 1 6 1316 265 298 35 12 chr12 95941087 95941172 -25316358 - MTEb-int LTR MaLR -629 951 865 6 1316 1686 168 5 123 chr12 95941176 95941549 -25315981 - ORR1A4 LTR MaLR 0 329 1 6 1316 1655 360 66 19 chr12 95941560 95942327 -25315203 - MTEb-int LTR MaLR -751 829 26 6 1316 197 0 71 0 chr12 95942327 95942355 -25315175 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1316 1655 360 66 19 chr12 95942355 95942379 -25315151 - MTEb-int LTR MaLR -1555 25 2 6 1316 231 269 114 53 chr12 95942379 95942493 -25315037 - MTEb LTR MaLR 0 379 259 6 1316 486 0 0 0 chr12 95943313 95943367 -25314163 + (TAA)n Simple_repeat Simple_repeat 3 56 0 6 1316 306 0 0 0 chr12 95943368 95943402 -25314128 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6 1316 216 0 0 0 chr12 95943678 95943702 -25313828 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 164 1421 152 45 4 chr12 95944703 95944947 -25312583 + Lx3C LINE L1 6689 6942 -34 6 1317 865 156 44 44 chr12 95945597 95945778 -25311752 + URR1B DNA MER1_type 45 225 0 6 1317 183 129 0 0 chr12 95946385 95946416 -25311114 + (CATA)n Simple_repeat Simple_repeat 2 32 0 6 1317 364 298 54 47 chr12 95946839 95947056 -25310474 - ORR1E LTR MaLR -146 228 10 6 1317 1529 244 159 31 chr12 95947096 95947617 -25309913 + Lx6 LINE L1 6844 7431 -29 6 1317 236 255 0 0 chr12 95947634 95947681 -25309849 + polypurine Low_complexity Low_complexity 3 49 0 6 1317 22 0 0 0 chr12 95948211 95948233 -25309297 + AT_rich Low_complexity Low_complexity 1 22 0 6 1317 588 276 89 12 chr12 95948244 95948581 -25308949 + L1_Mur3 LINE L1 1878 2240 -3640 6 1317 838 246 6 6 chr12 95948601 95948773 -25308757 + URR1A DNA MER1_type 1 172 -54 6 1317 3967 209 114 24 chr12 95948780 95949913 -25307617 - L1_Mur3 LINE L1 -968 4912 3678 6 1317 1214 47 6 39 chr12 95949925 95950103 -25307427 + L1Md_F3 LINE L1 6413 6584 0 6 1317 235 231 0 0 chr12 95950196 95950248 -25307282 - L1_Mur3 LINE L1 -2237 3643 3592 6 1317 5009 11 0 0 chr12 95950575 95951141 -25306389 - L1Md_A LINE L1 -79 5804 5239 6 1317 6684 18 0 0 chr12 95951141 95951905 -25305625 + L1Md_A LINE L1 5819 6582 0 6 1317 225 0 0 0 chr12 95951927 95951952 -25305578 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1317 992 122 0 12 chr12 95952642 95952808 -25304722 - L1Md_F2 LINE L1 -19 6563 6400 6 1317 27243 85 10 1 chr12 95952810 95957060 -25300470 - L1Md_F2 LINE L1 -279 6303 2018 6 1317 2685 124 70 0 chr12 95957060 95957487 -25300043 - L1Md_F2 LINE L1 -5666 950 494 6 1317 891 165 27 32 chr12 95959722 95959910 -25297620 - B2_Mm2 SINE B2 -7 188 2 6 1317 276 360 20 36 chr12 95959998 95960194 -25297336 - RLTR12B LTR ERVK -45 483 291 6 1317 304 303 13 66 chr12 95960243 95960395 -25297135 - RLTR11A2 LTR ERVK -266 261 118 7 1317 290 273 15 0 chr12 95960503 95960569 -25296961 + MER63D DNA AcHobo 311 377 -684 7 1317 1236 184 262 0 chr12 95961786 95962131 -25295399 - RMER1B Other Other -138 928 395 7 1317 180 0 0 0 chr12 95962140 95962160 -25295370 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 7 1317 1968 157 31 0 chr12 95963374 95963831 -25293699 - Lx LINE L1 -2 6652 6079 7 1317 1142 316 21 35 chr12 95964414 95964841 -25292689 + Lx8 LINE L1 6270 6690 -783 7 1317 670 308 93 17 chr12 95964843 95965187 -25292343 + ORR1D2 LTR MaLR 1 370 0 7 1317 356 323 26 31 chr12 95965202 95965394 -25292136 + Lx8 LINE L1 6686 6876 -597 7 1317 511 289 25 13 chr12 95965446 95965604 -25291926 + ORR1D2 LTR MaLR 1 160 -210 7 1317 420 238 0 0 chr12 95965606 95965690 -25291840 + Lx8 LINE L1 6880 6963 -510 7 1317 660 229 108 6 chr12 95967362 95967441 -25290089 + ORR1D1 LTR MaLR 1 89 -285 7 1317 3656 68 2 6 chr12 95967441 95967929 -25289601 + L1Md_F2 LINE L1 6097 6582 0 7 1317 660 263 111 5 chr12 95967929 95968108 -25289422 + ORR1D1 LTR MaLR 90 283 -87 7 1317 255 152 0 0 chr12 95968153 95968199 -25289331 + GA-rich Low_complexity Low_complexity 2 47 0 7 1317 27 0 0 0 chr12 95968538 95968565 -25288965 + AT_rich Low_complexity Low_complexity 1 27 0 7 1317 23 0 0 0 chr12 95968933 95968956 -25288574 + AT_rich Low_complexity Low_complexity 1 23 0 7 1317 726 224 55 22 chr12 95969139 95969322 -25288208 - B3A SINE B2 -8 190 2 7 1317 693 85 0 0 chr12 95972047 95972153 -25285377 + (TG)n Simple_repeat Simple_repeat 1 106 0 7 1317 449 357 55 43 chr12 95972188 95972443 -25285087 - B4A SINE B4 -11 281 24 7 1317 252 59 0 0 chr12 95973168 95973202 -25284328 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1317 552 171 17 33 chr12 95973203 95973384 -25284146 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 1317 327 303 44 21 chr12 95973392 95973496 -25284034 + B1F1 SINE Alu 1 107 -10 7 1317 180 27 81 0 chr12 95974676 95974713 -25282817 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 1317 2048 261 29 23 chr12 95974829 95975389 -25282141 - Lx5 LINE L1 -11 7039 6477 7 1317 227 334 14 13 chr12 95976241 95976328 -25281202 + ID4 SINE ID 3 90 -62 7 1317 210 244 0 0 chr12 95976924 95976965 -25280565 + polypyrimidine Low_complexity Low_complexity 2 42 0 7 1317 184 229 156 91 chr12 95977153 95977307 -25280223 - L3 LINE CR1 -1801 2688 2525 7 1317 241 329 50 12 chr12 95977564 95977644 -25279886 - B4 SINE B4 -209 83 1 7 1317 1042 206 25 0 chr12 95977700 95977899 -25279631 - URR1B DNA MER1_type 0 225 22 7 1317 243 0 0 0 chr12 95977991 95978018 -25279512 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 7 1317 1543 288 27 10 chr12 95978071 95978572 -25278958 + Lx6 LINE L1 6517 7398 -62 7 1317 439 284 42 14 chr12 95979090 95979233 -25278297 - B1_Mur1 SINE Alu 0 149 3 7 1317 1257 83 0 0 chr12 95979247 95979427 -25278103 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1317 424 231 200 30 chr12 95979445 95979610 -25277920 - Lx8 LINE L1 -28 7445 7253 7 1317 4938 104 14 1 chr12 95979610 95980322 -25277208 + Lx3_Mus LINE L1 6289 7009 0 7 1317 735 22 0 0 chr12 95980355 95980444 -25277086 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 7 1317 546 321 85 16 chr12 95980558 95980726 -25276804 + L1_Mur2 LINE L1 4491 4672 -1208 7 1317 392 19 39 0 chr12 95980726 95980778 -25276752 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 7 1317 546 301 142 22 chr12 95980778 95981026 -25276504 + L1_Mur2 LINE L1 4673 4987 -1156 7 1317 2899 192 68 11 chr12 95981182 95981803 -25275727 - Lx2B LINE L1 -20 6980 6325 7 1317 2033 195 75 7 chr12 95981801 95981941 -25275589 + L1_Mur2 LINE L1 5121 5277 -600 7 1317 203 0 0 36 chr12 95981941 95981969 -25275561 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1317 2033 195 75 7 chr12 95981969 95982257 -25275273 + L1_Mur2 LINE L1 5278 5578 -299 7 1317 249 163 0 0 chr12 95982586 95982635 -25274895 + T-rich Low_complexity Low_complexity 1 49 0 7 1317 31 58 0 0 chr12 95983153 95983205 -25274325 + AT_rich Low_complexity Low_complexity 1 52 0 7 1317 372 323 36 83 chr12 95986257 95986510 -25271020 - MTEb LTR MaLR 0 379 139 7 1317 826 359 11 18 chr12 95987021 95987299 -25270231 - B4A SINE B4 -4 288 13 7 1317 27 29 0 0 chr12 95987365 95987399 -25270131 + AT_rich Low_complexity Low_complexity 1 34 0 7 1317 231 88 0 0 chr12 95989301 95989335 -25268195 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1317 304 104 0 40 chr12 95989337 95989387 -25268143 - HAL1-3A_ME LINE L1 -840 2018 1971 7 1317 407 319 113 23 chr12 95989471 95989728 -25267802 - B4A SINE B4 -11 281 2 7 1317 412 325 30 6 chr12 95989792 95989959 -25267571 - L1MA4 LINE L1 -431 5869 5699 7 1317 341 294 48 30 chr12 95990229 95990397 -25267133 - L1MA4 LINE L1 -856 5287 5117 7 1317 838 242 80 45 chr12 95990422 95990441 -25267089 + Lx9 LINE L1 7176 7193 -451 7 1317 5897 166 7 17 chr12 95990441 95991520 -25266010 + Lx2 LINE L1 5929 6997 0 7 1317 838 242 80 45 chr12 95991520 95991786 -25265744 + Lx9 LINE L1 7194 7471 -173 7 1317 426 39 0 0 chr12 95991791 95991843 -25265687 + (CATA)n Simple_repeat Simple_repeat 3 54 0 7 1317 255 302 117 0 chr12 95992012 95992191 -25265339 - L1MA4 LINE L1 -1153 4990 4791 7 1317 28 29 0 0 chr12 95993242 95993277 -25264253 + AT_rich Low_complexity Low_complexity 1 35 0 7 1317 363 296 78 0 chr12 95993338 95993517 -25264013 - Zaphod2 DNA Tip100 -1826 1698 1506 7 1317 378 341 70 43 chr12 95993525 95993825 -25263705 + Lx8 LINE L1 7075 7382 -91 7 1317 180 0 0 0 chr12 95993914 95993934 -25263596 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1317 289 336 54 18 chr12 95994021 95994133 -25263397 + RSINE1 SINE B4 50 165 0 7 1317 2536 118 21 0 chr12 95994274 95994655 -25262875 + Lx3A LINE L1 6577 6965 -16 7 1317 450 0 0 0 chr12 95994655 95994705 -25262825 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 7 1317 295 260 59 59 chr12 95994791 95994893 -25262637 + LTR48B LTR ERV1 142 243 -401 7 1317 262 331 104 60 chr12 95994941 95995192 -25262338 + LTR48B LTR ERV1 507 768 -19 7 1317 277 213 62 62 chr12 95995162 95995242 -25262288 + RLTR25B LTR ERVK 430 509 -519 7 1317 716 55 0 0 chr12 95995184 95995275 -25262255 + B1_Mus2 SINE Alu 47 137 -10 7 1317 2419 223 46 36 chr12 95996665 95997227 -25260303 + Lx5 LINE L1 6478 7045 -5 7 1317 261 118 0 0 chr12 95997502 95997553 -25259977 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1317 697 298 69 26 chr12 95997611 95997914 -25259616 + Lx7 LINE L1 7088 7403 -293 7 1317 483 18 0 0 chr12 95998045 95998101 -25259429 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1317 261 261 0 0 chr12 95998163 95998232 -25259298 + L1_Mur3 LINE L1 5051 5119 -761 7 1317 278 294 201 7 chr12 95998874 95999028 -25258502 - Zaphod2 DNA Tip100 -2908 616 433 7 1317 3931 191 11 78 chr12 96000207 96001119 -25256411 - Lx4A LINE L1 -344 6714 5864 1 1317 33 56 0 0 chr12 96001639 96001693 -25255837 + AT_rich Low_complexity Low_complexity 1 54 0 2 1317 405 39 0 0 chr12 96001739 96001790 -25255740 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1317 457 332 22 5 chr12 96002015 96002239 -25255291 + Lx8 LINE L1 6472 6699 -774 4 1317 2099 245 25 8 chr12 96002258 96002781 -25254749 + Lx5 LINE L1 6518 7049 -1 5 1317 739 289 61 149 chr12 96002816 96003519 -25254011 + Lx8 LINE L1 6727 7367 -106 4 1317 724 291 31 4 chr12 96003581 96003809 -25253721 + Lx6 LINE L1 6083 6316 -1144 6 1317 742 30 20 0 chr12 96003843 96003944 -25253586 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 7 1317 263 248 54 93 chr12 96004156 96004285 -25253245 - MTEb LTR MaLR -5 374 251 8 1317 1536 176 225 114 chr12 96004648 96005200 -25252330 - Lx4B LINE L1 -5 7053 6441 9 1317 1971 239 60 39 chr12 96005217 96005866 -25251664 - RMER6C LTR ERVK -12 678 16 1 1317 417 66 0 0 chr12 96006623 96006684 -25250846 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1 1317 819 57 0 0 chr12 96007955 96008060 -25249470 + (TC)n Simple_repeat Simple_repeat 2 106 0 1 1317 21 0 0 0 chr12 96009115 96009136 -25248394 + AT_rich Low_complexity Low_complexity 1 21 0 1 1317 207 0 0 0 chr12 96009486 96009509 -25248021 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1317 29 47 0 0 chr12 96010001 96010044 -25247486 + AT_rich Low_complexity Low_complexity 1 43 0 1 1317 1366 193 43 7 chr12 96010761 96011038 -25246492 + Lx2 LINE L1 6707 6993 -4 1 1317 5247 38 0 0 chr12 96012115 96012740 -25244790 + L1Md_F2 LINE L1 5946 6570 -12 1 1317 1038 116 0 0 chr12 96014148 96014295 -25243235 + B1_Mus2 SINE Alu 1 147 0 1 1317 186 43 0 0 chr12 96014304 96014327 -25243203 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1317 741 79 0 0 chr12 96014392 96014493 -25243037 + (GA)n Simple_repeat Simple_repeat 1 101 0 2 1317 3105 103 83 4 chr12 96015429 96015935 -25241595 - Lx3_Mus LINE L1 -8 7001 6456 2 1317 21 36 0 0 chr12 96016146 96016174 -25241356 + AT_rich Low_complexity Low_complexity 1 28 0 2 1317 23 33 0 0 chr12 96016280 96016310 -25241220 + AT_rich Low_complexity Low_complexity 1 30 0 2 1317 180 250 0 67 chr12 96017388 96017448 -25240082 - MIR SINE MIR -93 169 114 2 1317 4250 67 12 7 chr12 96018010 96018603 -25238927 - L1Md_F2 LINE L1 0 6582 6007 2 1317 23 0 0 0 chr12 96018605 96018628 -25238902 + AT_rich Low_complexity Low_complexity 1 23 0 2 1317 2877 100 55 0 chr12 96018798 96019217 -25238313 - L1_Mus4 LINE L1 -202 6434 5993 2 1317 247 203 30 30 chr12 96019213 96019279 -25238251 + L1_Rod LINE L1 5152 5217 -630 2 1317 517 246 0 23 chr12 96019591 96019724 -25237806 - Lx7 LINE L1 0 7696 7567 2 1317 881 266 101 3 chr12 96020314 96020679 -25236851 - Lx7 LINE L1 -1464 6232 5832 2 1317 1566 211 13 35 chr12 96020682 96021080 -25236450 + L1_Mur3 LINE L1 4781 5169 -711 3 1317 484 290 121 41 chr12 96022438 96022908 -25234622 + Lx8 LINE L1 6758 7278 -195 3 1317 324 48 0 0 chr12 96022959 96023001 -25234529 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1317 368 306 104 50 chr12 96023322 96023841 -25233689 + L1MB8 LINE L1 4040 4586 -1560 3 1317 29 78 0 0 chr12 96024001 96024065 -25233465 + AT_rich Low_complexity Low_complexity 1 64 0 3 1317 962 313 68 54 chr12 96024285 96025156 -25232374 + L1MB8 LINE L1 5286 6168 -10 3 1317 329 117 17 0 chr12 96025500 96025560 -25231970 + (TTA)n Simple_repeat Simple_repeat 1 61 0 3 1317 362 309 99 13 chr12 96025580 96025731 -25231799 - RSINE1 SINE B4 0 165 2 3 1317 24 0 0 0 chr12 96026191 96026215 -25231315 + AT_rich Low_complexity Low_complexity 1 24 0 3 1317 3254 185 13 3 chr12 96026754 96027357 -25230173 + Lx2B LINE L1 6392 7000 0 3 1317 548 349 35 0 chr12 96027411 96027583 -25229947 - B3A SINE B2 -20 178 1 3 1317 888 298 14 44 chr12 96028353 96028697 -25228833 - Lx9 LINE L1 -640 7004 6671 4 1317 1101 277 48 98 chr12 96028721 96028974 -25228556 + Lx9 LINE L1 7052 7320 -324 4 1317 297 0 0 0 chr12 96028974 96029007 -25228523 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 4 1317 1101 277 48 98 chr12 96029007 96029377 -25228153 + Lx9 LINE L1 7321 7643 -1 4 1317 341 276 19 48 chr12 96029412 96029515 -25228015 - MTE2b LTR MaLR 0 379 280 4 1317 5730 146 19 9 chr12 96029610 96030607 -25226923 - Lx2 LINE L1 -4 6993 5987 4 1317 282 307 27 0 chr12 96030636 96030711 -25226819 - MTE2b LTR MaLR -292 82 6 4 1317 575 60 0 12 chr12 96032162 96032247 -25225283 + (TC)n Simple_repeat Simple_repeat 2 85 0 4 1317 562 101 0 18 chr12 96032247 96032357 -25225173 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 1317 294 348 77 62 chr12 96032396 96032665 -25224865 - B4A SINE B4 -16 276 4 4 1317 225 94 0 0 chr12 96034430 96034462 -25223068 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1317 234 0 0 0 chr12 96034840 96034866 -25222664 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1317 3472 107 57 16 chr12 96035694 96036253 -25221277 - Lx LINE L1 -8 6646 6065 5 1317 25 31 0 0 chr12 96038586 96038618 -25218912 + AT_rich Low_complexity Low_complexity 1 32 0 5 1317 8526 194 22 9 chr12 96038940 96040778 -25216752 - L1_Mur2 LINE L1 -1608 4269 2408 5 1317 2419 199 3 23 chr12 96040775 96040972 -25216558 + L1_Mur2 LINE L1 1860 2047 -3830 5 1317 435 52 0 0 chr12 96040972 96041030 -25216500 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1317 2419 199 3 23 chr12 96041030 96041399 -25216131 + L1_Mur2 LINE L1 2048 2415 -3462 5 1317 200 269 19 0 chr12 96042707 96042759 -25214771 + CT-rich Low_complexity Low_complexity 1 53 0 5 1317 5206 75 6 3 chr12 96043696 96044394 -25213136 + L1Md_F2 LINE L1 5883 6582 0 5 1317 338 278 109 70 chr12 96044536 96044737 -25212793 - MER20 DNA MER1_type -3 216 8 5 1317 412 359 45 0 chr12 96045254 96045410 -25212120 + RSINE1 SINE B4 3 165 0 5 1317 477 0 0 0 chr12 96045875 96045928 -25211602 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1317 21 0 0 0 chr12 96046823 96046844 -25210686 + AT_rich Low_complexity Low_complexity 1 21 0 6 1317 751 228 12 91 chr12 96047085 96047326 -25210204 + URR1B DNA MER1_type 1 222 -3 6 1317 28 0 0 0 chr12 96048703 96048731 -25208799 + AT_rich Low_complexity Low_complexity 1 28 0 6 1317 751 269 70 62 chr12 96048937 96049353 -25208177 + MTD LTR MaLR 1 419 0 6 1317 216 0 0 0 chr12 96050422 96050446 -25207084 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1317 368 316 42 95 chr12 96050596 96050764 -25206766 + B3A SINE B2 53 211 -5 6 1317 3410 179 104 8 chr12 96051063 96051767 -25205763 - Lx3C LINE L1 -177 5700 4930 6 1317 1448 168 0 81 chr12 96051764 96052074 -25205456 + Lx3C LINE L1 5702 5986 -990 6 1317 830 223 57 5 chr12 96052056 96052250 -25205280 - Lx5 LINE L1 -383 6667 6464 6 1317 4886 214 18 8 chr12 96052677 96053767 -25203763 - Lx3C LINE L1 -2 6974 5874 6 1317 3933 81 40 0 chr12 96053761 96054306 -25203224 + L1_Mus1 LINE L1 5997 6563 -4 6 1317 1620 31 0 0 chr12 96054328 96054614 -25202916 + (GGAGAA)n Simple_repeat Simple_repeat 1 286 0 7 1317 297 0 0 0 chr12 96054614 96054647 -25202883 + (GAA)n Simple_repeat Simple_repeat 1 33 0 7 1317 1481 275 54 11 chr12 96054647 96055089 -25202441 + Lx5 LINE L1 6587 7047 -3 7 1317 21 36 0 0 chr12 96056098 96056126 -25201404 + AT_rich Low_complexity Low_complexity 1 28 0 7 1317 213 222 0 0 chr12 96056343 96056388 -25201142 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 7 1317 336 339 191 38 chr12 96056677 96056913 -25200617 + RMER15 LTR ERVL 290 561 -14 7 1317 378 0 0 0 chr12 96058315 96058357 -25199173 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1317 231 140 0 0 chr12 96059985 96060035 -25197495 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 7 1317 5789 183 51 19 chr12 96060035 96061162 -25196368 - Lx4A LINE L1 -2 7056 5895 7 1317 442 132 13 0 chr12 96061163 96061239 -25196291 + L1_Mur2 LINE L1 4542 4618 -1259 7 1317 251 160 20 0 chr12 96061235 96061285 -25196245 + L1_Mur2 LINE L1 4978 5028 -849 7 1317 1918 159 11 17 chr12 96061286 96061637 -25195893 + L1_Mur2 LINE L1 5510 5858 -19 7 1317 414 0 0 0 chr12 96061956 96062002 -25195528 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1317 468 0 0 0 chr12 96062002 96062053 -25195477 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1317 192 77 0 0 chr12 96062148 96062174 -25195356 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1317 1782 201 77 49 chr12 96062176 96062719 -25194811 - RMER19B LTR ERVK -6 896 247 8 1317 414 0 0 0 chr12 96062719 96062765 -25194765 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1317 1712 232 139 99 chr12 96062765 96063044 -25194486 - RMER19B LTR ERVK -656 246 5 8 1317 210 91 0 0 chr12 96063051 96063084 -25194446 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1317 395 338 93 34 chr12 96063132 96063368 -25194162 - B4A SINE B4 0 292 43 8 1317 491 137 8 41 chr12 96063504 96063626 -25193904 + (CA)n Simple_repeat Simple_repeat 2 119 0 8 1317 396 0 0 0 chr12 96064241 96064285 -25193245 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1317 528 16 0 0 chr12 96064285 96064345 -25193185 + (GA)n Simple_repeat Simple_repeat 1 61 0 8 1317 569 349 68 31 chr12 96064890 96065245 -25192285 + MTEa LTR MaLR 12 379 0 9 1317 459 0 0 0 chr12 96065772 96065823 -25191707 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1317 201 180 20 0 chr12 96066761 96066811 -25190719 + A-rich Low_complexity Low_complexity 5 55 0 9 1317 22 56 0 0 chr12 96067728 96067764 -25189766 + AT_rich Low_complexity Low_complexity 1 36 0 9 1317 509 319 37 11 chr12 96069277 96069467 -25188063 + MLT1D LTR MaLR 310 504 -1 9 1317 383 362 27 7 chr12 96070353 96070503 -25187027 + RSINE1 SINE B4 1 153 -12 9 1317 207 0 0 0 chr12 96070503 96070526 -25187004 + (TC)n Simple_repeat Simple_repeat 1 23 0 9 1317 360 43 0 0 chr12 96070526 96070571 -25186959 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1317 202 139 23 0 chr12 96070647 96070690 -25186840 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 9 1317 1069 75 0 13 chr12 96070691 96070840 -25186690 - B1_Mus2 SINE Alu 0 147 1 9 1317 309 100 0 0 chr12 96071836 96071886 -25185644 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 1317 21 0 0 0 chr12 96072468 96072489 -25185041 + AT_rich Low_complexity Low_complexity 1 21 0 1 1317 498 319 75 18 chr12 96072576 96072962 -25184568 + L1_Mur3 LINE L1 2292 2699 -3181 1 1317 615 318 94 71 chr12 96072977 96073285 -25184245 - MTE2a LTR MaLR 0 379 65 1 1317 778 261 55 24 chr12 96073433 96073723 -25183807 - Lx7 LINE L1 -4 7692 7394 1 1317 263 304 0 0 chr12 96073934 96074003 -25183527 - ID2 SINE ID -10 73 5 1 1317 186 271 21 0 chr12 96074466 96074514 -25183016 - MER5A DNA MER1_type -75 114 66 1 1318 21 0 0 0 chr12 96077919 96077940 -25179590 + AT_rich Low_complexity Low_complexity 1 21 0 1 1318 411 336 95 7 chr12 96077969 96078116 -25179414 - B3A SINE B2 -30 168 9 1 1318 769 291 32 19 chr12 96078540 96078597 -25178933 + L1_Mur1 LINE L1 5461 5522 -325 1 1318 4062 147 23 20 chr12 96078597 96079306 -25178224 + Lx LINE L1 5944 6654 0 1 1318 1752 122 1 4 chr12 96079306 96079563 -25177967 + L1_Mur1 LINE L1 5523 5818 -68 1 1318 2280 68 0 61 chr12 96079563 96079907 -25177623 + L1_Mus2 LINE L1 6237 6559 -7 1 1318 6528 13 0 0 chr12 96079908 96080656 -25176874 + L1_Mm LINE L1 4696 5443 -440 1 1318 233 226 0 12 chr12 96081094 96081179 -25176351 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1318 626 99 30 0 chr12 96081442 96081543 -25175987 - L1_Mur3 LINE L1 -1287 4593 4490 1 1318 2294 339 48 21 chr12 96082078 96083207 -25174323 - Lx8 LINE L1 -147 7326 6168 1 1318 432 37 0 0 chr12 96083282 96083336 -25174194 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1318 28 29 0 0 chr12 96083528 96083563 -25173967 + AT_rich Low_complexity Low_complexity 1 35 0 1 1318 221 167 24 0 chr12 96083584 96083626 -25173904 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1318 7451 66 21 3 chr12 96083728 96084888 -25172642 - L1Md_F2 LINE L1 -12 6570 5392 1 1318 8936 79 4 2 chr12 96084883 96086102 -25171428 + L1Md_F2 LINE L1 4178 5398 -485 1 1318 37978 30 0 0 chr12 96086681 96093329 -25164201 - L1Md_T LINE L1 0 6585 1 1 1318 1387 291 15 8 chr12 96093366 96093760 -25163770 + Lx7 LINE L1 6146 6542 -1154 1 1318 828 128 0 0 chr12 96093800 96093933 -25163597 + (TA)n Simple_repeat Simple_repeat 2 134 0 1 1318 530 258 100 6 chr12 96094217 96094377 -25163153 - MTC LTR MaLR -21 398 224 1 1318 456 128 0 0 chr12 96094379 96094457 -25163073 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 1 1318 657 271 61 47 chr12 96094462 96094675 -25162855 - MTC LTR MaLR -205 216 1 1 1318 622 339 70 35 chr12 96095088 96095345 -25162185 - B4 SINE B4 -22 270 5 1 1318 235 349 119 6 chr12 96095807 96095983 -25161547 + MARNA DNA Mariner 350 545 -41 1 1318 29 0 0 0 chr12 96096815 96096844 -25160686 + AT_rich Low_complexity Low_complexity 1 29 0 1 1318 4507 231 62 12 chr12 96097005 96098364 -25159166 + L1_Mur3 LINE L1 56 1482 -4398 1 1318 1905 266 85 52 chr12 96098333 96099086 -25158444 + Lx6 LINE L1 6681 7458 -2 1 1318 510 131 0 0 chr12 96099147 96099246 -25158284 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1318 294 340 86 76 chr12 96099782 96100017 -25157513 + MLT1A0 LTR MaLR 42 287 -78 1 1318 3578 119 80 30 chr12 96100017 96100658 -25156872 + Lx LINE L1 5969 6641 -13 1 1318 294 340 86 76 chr12 96100658 96100724 -25156806 + MLT1A0 LTR MaLR 288 346 -19 1 1318 8668 142 18 7 chr12 96101999 96103471 -25154059 - Lx2 LINE L1 -1 6996 5501 1 1318 6603 161 17 9 chr12 96103482 96104745 -25152785 + L1_Mur2 LINE L1 2810 4082 -1795 1 1318 528 354 56 41 chr12 96104773 96105115 -25152415 - ORR1E LTR MaLR -5 354 8 1 1318 294 29 0 0 chr12 96105513 96105548 -25151982 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1318 1121 140 35 0 chr12 96105563 96105763 -25151767 - MusHAL1 LINE L1 -304 2408 2202 1 1318 181 111 67 0 chr12 96105969 96106014 -25151516 + A-rich Low_complexity Low_complexity 1 48 0 1 1318 252 216 10 19 chr12 96108865 96108969 -25148561 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 1318 1641 190 38 5 chr12 96109493 96109829 -25147701 + Lx3C LINE L1 5587 5929 -1531 1 1318 576 241 9 0 chr12 96110312 96110424 -25147106 + B3 SINE B2 1 113 -103 1 1318 1567 220 66 5 chr12 96110510 96110903 -25146627 - MTC LTR MaLR 0 421 5 1 1318 270 0 0 0 chr12 96112518 96112548 -25144982 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1318 31 99 0 0 chr12 96112711 96112812 -25144718 + AT_rich Low_complexity Low_complexity 1 101 0 1 1318 2478 125 119 34 chr12 96112961 96113222 -25144308 + MT2C_Mm LTR ERVL 1 247 -228 1 1318 513 0 0 0 chr12 96113222 96113279 -25144251 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1318 2478 125 119 34 chr12 96113279 96113455 -25144075 + MT2C_Mm LTR ERVL 248 474 -1 1 1318 180 111 0 0 chr12 96113646 96113673 -25143857 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1318 1154 68 0 0 chr12 96113673 96113819 -25143711 - B1_Mus2 SINE Alu 0 147 2 1 1318 409 363 93 0 chr12 96114229 96114433 -25143097 - MER2 DNA MER2_type 0 345 123 1 1318 5856 108 21 7 chr12 96114505 96115405 -25142125 + Lx3_Mus LINE L1 6036 6948 -61 1 1318 300 53 0 0 chr12 96115609 96115647 -25141883 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1318 398 104 0 25 chr12 96115679 96115758 -25141772 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 1 1318 1498 11 0 11 chr12 96116549 96116731 -25140799 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1318 738 154 0 20 chr12 96116731 96116874 -25140656 + GA-rich Low_complexity Low_complexity 10 150 0 1 1318 379 271 24 16 chr12 96117728 96117852 -25139678 - MER3 DNA MER1_type -8 201 77 1 1318 23 0 0 0 chr12 96118700 96118723 -25138807 + AT_rich Low_complexity Low_complexity 1 23 0 1 1318 495 112 0 0 chr12 96119026 96119106 -25138424 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1318 222 318 35 12 chr12 96119194 96119280 -25138250 - RSINE1 SINE B4 0 165 78 1 1318 21 36 0 0 chr12 96119981 96120009 -25137521 + AT_rich Low_complexity Low_complexity 1 28 0 1 1318 236 362 20 68 chr12 96120221 96120369 -25137161 - B4A SINE B4 -151 141 1 1 1318 405 0 0 0 chr12 96120398 96120443 -25137087 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1318 486 0 0 0 chr12 96120443 96120496 -25137034 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1318 348 350 60 0 chr12 96120533 96120650 -25136880 - RSINE1 SINE B4 -38 127 4 1 1318 32 26 0 0 chr12 96121680 96121719 -25135811 + AT_rich Low_complexity Low_complexity 1 39 0 1 1318 3169 39 5 3 chr12 96121719 96122110 -25135420 - L1Md_F3 LINE L1 -17 6567 6176 1 1318 1769 51 0 0 chr12 96122110 96122326 -25135204 + L1Md_T LINE L1 5948 6163 -419 1 1318 316 273 139 32 chr12 96122377 96122593 -25134937 - RLTR16 LTR ERVK -243 262 24 1 1318 198 91 0 0 chr12 96122988 96123021 -25134509 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1318 492 94 0 23 chr12 96123229 96123316 -25134214 - Lx LINE L1 -4 6650 6566 1 1318 587 160 14 14 chr12 96123531 96123747 -25133783 + (CA)n Simple_repeat Simple_repeat 1 216 0 1 1318 501 119 10 19 chr12 96123839 96123942 -25133588 + (CA)n Simple_repeat Simple_repeat 2 103 0 1 1318 182 105 0 26 chr12 96124153 96124192 -25133338 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1318 356 316 10 39 chr12 96125326 96125428 -25132102 - PB1D10 SINE Alu -6 111 13 1 1318 25 0 0 0 chr12 96125496 96125521 -25132009 + AT_rich Low_complexity Low_complexity 1 25 0 1 1318 309 252 56 0 chr12 96125675 96125782 -25131748 + CT-rich Low_complexity Low_complexity 5 117 0 1 1318 558 0 0 0 chr12 96125811 96125873 -25131657 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1318 38 61 0 0 chr12 96126523 96126589 -25130941 + AT_rich Low_complexity Low_complexity 1 66 0 1 1318 313 361 47 34 chr12 96126622 96126771 -25130759 - B3 SINE B2 -53 163 13 1 1318 180 0 0 0 chr12 96127292 96127312 -25130218 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1318 21 0 0 0 chr12 96128818 96128839 -25128691 + AT_rich Low_complexity Low_complexity 1 21 0 1 1318 666 37 0 0 chr12 96129703 96129784 -25127746 + (TTC)n Simple_repeat Simple_repeat 3 83 0 1 1318 923 50 8 0 chr12 96129784 96129905 -25127625 + (TCTCC)n Simple_repeat Simple_repeat 2 123 0 1 1318 222 167 24 0 chr12 96129905 96129947 -25127583 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1318 15062 4 0 0 chr12 96129972 96132352 -25125178 - L1Md_A LINE L1 -1 6581 4202 1 1318 1438 0 0 0 chr12 96132350 96132509 -25125021 + L1Md_A LINE L1 4042 4200 -1683 1 1318 252 297 231 47 chr12 96132581 96132858 -25124672 - L1M2 LINE L1 -571 5729 5402 1 1318 327 295 140 5 chr12 96132886 96133107 -25124423 - L1M2 LINE L1 -1454 4689 4439 1 1318 337 305 60 32 chr12 96133402 96133717 -25123813 + L1M2 LINE L1 4000 4323 -1820 1 1318 181 184 26 26 chr12 96134476 96134515 -25123015 + L2 LINE L2 2403 2441 -978 1 1318 612 188 0 0 chr12 96134701 96134839 -25122691 + (CA)n Simple_repeat Simple_repeat 2 139 0 1 1318 944 125 95 17 chr12 96135014 96135031 -25122499 - B2_Mm2 SINE B2 0 195 177 1 1318 1216 41 0 0 chr12 96135031 96135177 -25122353 - B1_Mm SINE Alu 0 147 2 1 1318 207 0 0 0 chr12 96135177 96135200 -25122330 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1318 944 125 95 17 chr12 96135200 96135360 -25122170 - B2_Mm2 SINE B2 -19 176 4 1 1318 1215 120 16 5 chr12 96136008 96136192 -25121338 - B2_Mm2 SINE B2 -6 189 4 1 1318 256 354 0 20 chr12 96136476 96136574 -25120956 - B4A SINE B4 -29 263 168 1 1318 2012 77 3 40 chr12 96136576 96136873 -25120657 + L1_Mus2 LINE L1 6281 6566 0 1 1318 202 121 0 29 chr12 96136878 96136912 -25120618 + GA-rich Low_complexity Low_complexity 4 36 0 1 1318 1616 196 141 5 chr12 96136920 96137304 -25120226 + Lx2A1 LINE L1 6572 7007 -1 1 1318 23 68 0 0 chr12 96137336 96137380 -25120150 + AT_rich Low_complexity Low_complexity 1 44 0 1 1318 1325 263 56 5 chr12 96137380 96137773 -25119757 - Lx7 LINE L1 -455 7241 6829 1 1318 323 227 15 0 chr12 96137749 96137815 -25119715 + Lx7 LINE L1 7219 7285 -411 1 1318 1257 105 21 5 chr12 96138999 96139191 -25118339 + MTA_Mm LTR MaLR 1 195 -201 1 1318 526 82 20 30 chr12 96139192 96139292 -25118238 - L1_Mm LINE L1 -521 5362 5264 2 1318 306 271 86 50 chr12 96139435 96139575 -25117955 - MLT1A0 LTR MaLR 0 365 221 2 1318 767 205 170 14 chr12 96139737 96139955 -25117575 - Lx2A1 LINE L1 -3 7005 6754 2 1318 2551 206 61 37 chr12 96140202 96140793 -25116737 - Lx5 LINE L1 -457 6593 5989 2 1318 1941 220 13 30 chr12 96140802 96141262 -25116268 + Lx4B LINE L1 6606 7057 -1 2 1318 21 0 0 0 chr12 96141815 96141836 -25115694 + AT_rich Low_complexity Low_complexity 1 21 0 2 1318 348 164 0 0 chr12 96142182 96142249 -25115281 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 1318 461 299 172 12 chr12 96142259 96142428 -25115102 - B3 SINE B2 -13 203 8 2 1318 1012 94 7 26 chr12 96142458 96142611 -25114919 + L1_Mus1 LINE L1 6416 6565 -2 2 1318 412 122 24 0 chr12 96142657 96142739 -25114791 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1318 585 76 0 0 chr12 96142942 96143021 -25114509 + (GAAAA)n Simple_repeat Simple_repeat 2 80 0 2 1318 626 77 0 0 chr12 96143021 96143112 -25114418 + L1_Mus2 LINE L1 6474 6564 -2 2 1318 906 60 0 0 chr12 96143118 96143235 -25114295 + (GAGAA)n Simple_repeat Simple_repeat 2 118 0 2 1318 207 339 30 53 chr12 96144891 96145022 -25112508 + MIR SINE MIR 11 138 -124 2 1318 288 77 0 0 chr12 96145485 96145524 -25112006 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2 1318 1120 68 0 40 chr12 96145524 96145676 -25111854 - B1_Mm SINE Alu 0 147 2 2 1318 23 0 0 0 chr12 96145712 96145735 -25111795 + AT_rich Low_complexity Low_complexity 1 23 0 2 1318 22 56 0 0 chr12 96146228 96146264 -25111266 + AT_rich Low_complexity Low_complexity 1 36 0 2 1318 278 330 69 9 chr12 96146329 96146445 -25111085 - Lx8 LINE L1 -137 7336 7214 2 1318 267 93 0 0 chr12 96146445 96146488 -25111042 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1318 225 220 20 0 chr12 96146496 96146546 -25110984 - Lx8 LINE L1 -247 7226 7176 2 1318 781 38 19 0 chr12 96146562 96146667 -25110863 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 2 1318 2157 216 70 44 chr12 96147541 96148084 -25109446 - Lx5 LINE L1 -3 7047 6491 2 1318 261 0 0 0 chr12 96148977 96149006 -25108524 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1318 214 139 58 0 chr12 96149508 96149594 -25107936 + (TA)n Simple_repeat Simple_repeat 2 92 0 2 1318 555 320 54 12 chr12 96149666 96149925 -25107605 + MuRRS4-int LTR ERV1 1167 1436 -3627 2 1318 218 301 52 31 chr12 96150467 96150563 -25106967 - B4 SINE B4 -191 101 4 2 1318 344 319 81 46 chr12 96151849 96152109 -25105421 + L1M2 LINE L1 3072 3340 -2803 2 1318 268 140 32 21 chr12 96152109 96152204 -25105326 + A-rich Low_complexity Low_complexity 5 100 0 2 1318 383 112 0 12 chr12 96152228 96152309 -25105221 + (CAAA)n Simple_repeat Simple_repeat 2 81 0 2 1318 2375 172 65 51 chr12 96155033 96155541 -25101989 - RMER15 LTR ERVL -57 518 4 2 1318 260 322 11 0 chr12 96155721 96155808 -25101722 - B4A SINE B4 -203 89 2 2 1318 428 343 69 10 chr12 96156831 96157053 -25100477 + B4 SINE B4 5 241 -51 2 1318 24988 20 1 0 chr12 96157421 96160352 -25097178 + L1Md_A LINE L1 2654 5586 -297 2 1318 8345 38 0 0 chr12 96160353 96161348 -25096182 + L1Md_A LINE L1 5588 6582 0 2 1318 276 128 23 23 chr12 96161610 96161698 -25095832 + (TTTG)n Simple_repeat Simple_repeat 2 89 0 2 1318 318 369 38 6 chr12 96162322 96162480 -25095050 - MER5B DNA MER1_type -2 176 14 2 1318 301 321 43 21 chr12 96162498 96162638 -25094892 + MER5A1 DNA MER1_type 24 166 0 2 1318 1794 163 0 50 chr12 96163649 96163991 -25093539 - ORR1A4 LTR MaLR -3 326 2 2 1318 3115 235 86 97 chr12 96163992 96165546 -25091984 - ORR1A4-int LTR MaLR 0 1963 517 2 1318 1125 231 14 46 chr12 96165546 96165934 -25091596 - RMER19B LTR ERVK -2 900 255 2 1318 285 79 0 92 chr12 96165945 96166043 -25091487 + A-rich Low_complexity Low_complexity 2 90 0 2 1318 543 221 73 100 chr12 96166054 96166364 -25091166 - RMER19B LTR ERVK -336 275 13 2 1318 2422 157 53 0 chr12 96166363 96166796 -25090734 - ORR1A4-int LTR MaLR -1507 456 1 2 1318 1245 201 7 71 chr12 96166820 96167114 -25090416 - ORR1A4 LTR MaLR -50 276 2 2 1318 22 0 0 0 chr12 96168130 96168152 -25089378 + AT_rich Low_complexity Low_complexity 1 22 0 2 1318 244 255 40 20 chr12 96168729 96168829 -25088701 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 2 1318 372 333 64 43 chr12 96169925 96170207 -25087323 + B4A SINE B4 5 292 0 2 1318 22 35 0 0 chr12 96170302 96170331 -25087199 + AT_rich Low_complexity Low_complexity 1 29 0 2 1318 31 44 0 0 chr12 96170345 96170390 -25087140 + AT_rich Low_complexity Low_complexity 1 45 0 2 1318 553 247 71 49 chr12 96171448 96171631 -25085899 - B3 SINE B2 -27 189 3 2 1318 213 65 0 0 chr12 96172062 96172093 -25085437 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1318 31 26 0 0 chr12 96172180 96172218 -25085312 + AT_rich Low_complexity Low_complexity 1 38 0 2 1318 25 51 0 0 chr12 96173461 96173500 -25084030 + AT_rich Low_complexity Low_complexity 1 39 0 2 1318 3232 103 143 4 chr12 96173861 96174414 -25083116 - Lx3_Mus LINE L1 0 7009 6380 2 1318 5669 159 24 25 chr12 96174569 96175656 -25081874 - Lx2B LINE L1 -1 6999 5914 2 1318 356 331 64 68 chr12 96176447 96176713 -25080817 + MamGypLTR1a LTR Gypsy 40 304 -480 2 1318 243 0 0 0 chr12 96177079 96177106 -25080424 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1318 323 253 133 64 chr12 96177298 96177501 -25080029 - ID_B1 SINE B4 -6 218 2 2 1318 21 0 0 0 chr12 96177658 96177679 -25079851 + AT_rich Low_complexity Low_complexity 1 21 0 2 1318 493 309 0 7 chr12 96178908 96179045 -25078485 - B1_Mur1 SINE Alu 0 149 14 2 1318 759 80 8 16 chr12 96179239 96179366 -25078164 + (TA)n Simple_repeat Simple_repeat 2 127 0 2 1318 399 162 40 0 chr12 96180526 96180600 -25076930 - L1_Mur2 LINE L1 -1427 4450 4374 2 1318 717 203 35 14 chr12 96182991 96183136 -25074394 - B1_Mus1 SINE Alu 0 148 1 2 1318 21 0 0 0 chr12 96184242 96184263 -25073267 + AT_rich Low_complexity Low_complexity 1 21 0 2 1318 1299 301 16 21 chr12 96188356 96188733 -25068797 - MTE2b LTR MaLR -4 375 1 2 1318 313 289 22 0 chr12 96188758 96188848 -25068682 + GA-rich Low_complexity Low_complexity 1 92 0 2 1318 435 19 0 0 chr12 96189118 96189170 -25068360 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1318 24 0 0 0 chr12 96190208 96190232 -25067298 + AT_rich Low_complexity Low_complexity 1 24 0 2 1318 447 145 0 0 chr12 96190301 96190384 -25067146 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 2 1318 258 81 0 0 chr12 96190987 96191024 -25066506 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1318 2216 59 21 0 chr12 96191216 96191502 -25066028 + L1_Mus1 LINE L1 6275 6566 -1 2 1318 186 43 0 0 chr12 96191649 96191672 -25065858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1318 243 143 77 13 chr12 96191877 96191955 -25065575 + (CAAA)n Simple_repeat Simple_repeat 3 85 0 2 1318 272 300 25 0 chr12 96191955 96192075 -25065455 + L1MC1 LINE L1 5825 5947 -386 2 1318 4414 109 27 1 chr12 96192254 96192913 -25064617 - L1_Mus4 LINE L1 0 6636 5961 2 1318 608 42 0 0 chr12 96192915 96192986 -25064544 + L1_Mus4 LINE L1 5874 5944 -692 2 1318 297 0 0 0 chr12 96193148 96193181 -25064349 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1318 507 244 14 37 chr12 96193322 96193476 -25064054 - ORR1D2 LTR MaLR 0 374 216 2 1318 263 224 0 0 chr12 96193510 96193568 -25063962 + (CAG)n Simple_repeat Simple_repeat 3 60 0 2 1318 467 265 29 7 chr12 96193617 96193754 -25063776 - Lx7 LINE L1 -327 7369 7230 2 1318 521 55 14 0 chr12 96193776 96193849 -25063681 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1318 237 347 91 0 chr12 96194129 96194250 -25063280 - MER2B DNA MER2_type -3 333 202 2 1318 2495 291 20 45 chr12 96194316 96194775 -25062755 - Lx6 LINE L1 -185 7275 6827 2 1318 2772 88 7 47 chr12 96194775 96195182 -25062348 + L1_Mus2 LINE L1 6176 6566 0 2 1318 2495 291 20 45 chr12 96195182 96195538 -25061992 - Lx6 LINE L1 -634 6826 6481 2 1318 621 72 0 0 chr12 96195600 96195683 -25061847 + (TTTTTG)n Simple_repeat Simple_repeat 2 84 0 2 1318 1023 89 0 0 chr12 96195685 96195820 -25061710 - B1_Mus2 SINE Alu 0 147 13 2 1318 724 259 77 5 chr12 96195884 96196078 -25061452 - B3 SINE B2 -6 210 3 2 1318 22 0 0 0 chr12 96196093 96196115 -25061415 + AT_rich Low_complexity Low_complexity 1 22 0 2 1318 288 278 0 0 chr12 96196590 96196685 -25060845 + (TG)n Simple_repeat Simple_repeat 1 95 0 2 1318 546 91 0 0 chr12 96197881 96197958 -25059572 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1318 233 140 34 34 chr12 96197959 96198018 -25059512 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 2 1318 277 330 131 30 chr12 96200050 96200416 -25057114 + L2 LINE L2 2497 2899 -520 2 1318 228 35 0 0 chr12 96200954 96200983 -25056547 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1318 1716 232 38 5 chr12 96201445 96201843 -25055687 - MTD LTR MaLR -8 411 1 2 1318 341 315 116 34 chr12 96201843 96202048 -25055482 + RMER15 LTR ERVL 63 284 -291 2 1318 912 281 104 19 chr12 96202052 96202368 -25055162 + RMER15 LTR ERVL 169 511 -64 2 1318 4409 93 23 12 chr12 96202682 96203327 -25054203 - L1_Mus1 LINE L1 0 6567 5916 2 1318 1432 263 22 6 chr12 96203645 96204001 -25053529 - ORR1D1 LTR MaLR -12 362 1 2 1318 258 171 60 51 chr12 96205781 96205827 -25051703 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2 1318 420 20 0 0 chr12 96205827 96205876 -25051654 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 1318 258 171 60 51 chr12 96205876 96205946 -25051584 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 2 164 7588 98 13 5 chr12 96206288 96207848 -25049682 - L1_Mus3 LINE L1 -7 6631 5061 2 1319 363 132 0 0 chr12 96207999 96208067 -25049463 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1319 907 296 88 34 chr12 96210519 96210872 -25046658 + MLT1C LTR MaLR 1 372 -95 2 1319 569 303 79 0 chr12 96211284 96211462 -25046068 + Lx8 LINE L1 7032 7223 -250 2 1319 1004 54 8 0 chr12 96211502 96211631 -25045899 + B1_Mus1 SINE Alu 13 142 -6 3 1319 180 0 0 0 chr12 96211770 96211790 -25045740 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 3 1319 3803 265 37 20 chr12 96211790 96212820 -25044710 - Lx5 LINE L1 -16 7034 5988 3 1319 2074 43 0 4 chr12 96212848 96213106 -25044424 + L1Md_F3 LINE L1 6325 6581 -3 3 1319 26 30 0 0 chr12 96213260 96213293 -25044237 + AT_rich Low_complexity Low_complexity 1 33 0 3 1319 22 35 0 0 chr12 96213912 96213941 -25043589 + AT_rich Low_complexity Low_complexity 1 29 0 3 1319 226 222 22 0 chr12 96213956 96214001 -25043529 - tRNA-Ala-GCA tRNA tRNA -16 59 14 3 1319 205 346 88 22 chr12 96214172 96214308 -25043222 - MIR SINE MIR -32 230 86 3 1319 22 103 0 0 chr12 96214552 96214630 -25042900 + AT_rich Low_complexity Low_complexity 1 78 0 3 1319 468 0 0 0 chr12 96214740 96214792 -25042738 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1319 225 0 0 0 chr12 96215032 96215057 -25042473 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3 1319 477 47 0 0 chr12 96215342 96215406 -25042124 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 3 1319 1131 76 0 0 chr12 96215406 96215550 -25041980 - B1_Mus2 SINE Alu -3 144 1 3 1319 1277 256 84 75 chr12 96216060 96216474 -25041056 + MTD LTR MaLR 2 419 0 3 1319 2612 26 0 0 chr12 96216608 96216913 -25040617 + L1Md_A LINE L1 6277 6581 -1 3 1319 778 328 71 8 chr12 96217073 96217427 -25040103 + MER31A LTR ERV1 13 388 -97 3 1319 1117 68 7 0 chr12 96217995 96218141 -25039389 + B1_Mus2 SINE Alu 1 147 0 3 1319 1114 234 41 96 chr12 96218565 96218801 -25038729 - RMER10A LTR ERVL 0 442 217 3 1319 195 42 0 0 chr12 96218801 96218825 -25038705 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1319 1114 234 41 96 chr12 96218825 96219024 -25038506 - RMER10A LTR ERVL -226 216 31 3 1319 181 279 79 34 chr12 96219956 96220045 -25037485 + L3 LINE CR1 4324 4416 -73 3 1319 21 36 0 0 chr12 96221165 96221193 -25036337 + AT_rich Low_complexity Low_complexity 1 28 0 3 1319 329 135 0 43 chr12 96221216 96221309 -25036221 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 1319 373 70 11 55 chr12 96221409 96221500 -25036030 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 3 1319 1000 103 14 7 chr12 96221505 96221652 -25035878 - B1_Mus1 SINE Alu 0 148 1 3 1319 21 36 0 0 chr12 96221802 96221830 -25035700 + AT_rich Low_complexity Low_complexity 1 28 0 3 1319 25 0 0 0 chr12 96222010 96222035 -25035495 + AT_rich Low_complexity Low_complexity 1 25 0 3 1319 273 242 83 71 chr12 96222066 96222218 -25035312 - MTD LTR MaLR -13 406 241 3 1319 594 306 81 5 chr12 96223194 96223391 -25034139 + B3 SINE B2 1 212 -4 3 1319 1813 245 7 7 chr12 96223786 96224197 -25033333 - MTC LTR MaLR -4 417 7 3 1319 544 281 15 15 chr12 96224398 96224528 -25033002 + RSINE1 SINE B4 3 132 -33 3 1319 25 31 0 0 chr12 96226108 96226140 -25031390 + AT_rich Low_complexity Low_complexity 1 32 0 3 1319 1185 62 0 0 chr12 96226146 96226292 -25031238 + B1_Mus1 SINE Alu 1 146 -2 3 1319 24 32 0 0 chr12 96226568 96226599 -25030931 + AT_rich Low_complexity Low_complexity 1 31 0 3 1319 528 208 49 55 chr12 96226689 96226872 -25030658 + Lx2B LINE L1 6819 7000 0 3 1319 1632 71 9 13 chr12 96226910 96226924 -25030606 + L1_Mm LINE L1 4695 4710 -1173 3 1319 183 42 0 0 chr12 96226924 96226948 -25030582 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1319 1953 41 12 0 chr12 96226954 96227200 -25030330 - L1Md_F2 LINE L1 -14 6568 6320 3 1319 1632 71 9 13 chr12 96227200 96227406 -25030124 + L1_Mm LINE L1 4717 4920 -963 3 1319 244 17 48 79 chr12 96227406 96227469 -25030061 + (TTTTG)n Simple_repeat Simple_repeat 4 64 0 3 1319 1073 99 0 0 chr12 96227470 96227612 -25029918 - B1_Mm SINE Alu -2 145 4 3 1319 26138 12 21 20 chr12 96228019 96230468 -25027062 + L1_Mm LINE L1 2418 4917 -966 3 1319 225 183 46 77 chr12 96230468 96230533 -25026997 - RMER20A LTR ERVK -268 248 186 3 1319 26138 12 21 20 chr12 96230533 96231187 -25026343 + L1_Mm LINE L1 4918 5586 -297 3 1319 8656 19 0 1 chr12 96231187 96232183 -25025347 + L1Md_A LINE L1 5587 6581 -1 3 1319 358 348 28 14 chr12 96233396 96233539 -25023991 - B1F1 SINE Alu -2 147 3 3 1319 406 370 128 9 chr12 96235139 96235357 -25022173 - MTD LTR MaLR -118 301 58 3 1319 1916 162 49 36 chr12 96235402 96235813 -25021717 - RLTR28 LTR ERVL -2 522 107 3 1319 394 232 22 44 chr12 96235814 96235847 -25021683 + L1Md_F3 LINE L1 5653 5682 -618 3 1319 6466 48 1 2 chr12 96235847 96236654 -25020876 - L1Md_F3 LINE L1 -16 6568 5763 3 1319 860 65 1 26 chr12 96236654 96236755 -25020775 + L1Md_F3 LINE L1 5652 5784 -516 3 1319 1340 219 4 18 chr12 96236843 96237118 -25020412 + RLTR28 LTR ERVL 1 271 -253 3 1319 1663 229 183 16 chr12 96237125 96237639 -25019891 + RMER19B LTR ERVK 303 902 0 3 1319 1017 235 19 19 chr12 96237639 96237892 -25019638 + RLTR28 LTR ERVL 259 511 -13 3 1319 23 33 0 0 chr12 96238144 96238174 -25019356 + AT_rich Low_complexity Low_complexity 1 30 0 3 1319 275 302 149 122 chr12 96238174 96238355 -25019175 + B3A SINE B2 13 198 0 3 1319 433 116 12 0 chr12 96238674 96238760 -25018770 + L1Md_A LINE L1 6495 6581 -1 3 1319 732 62 0 59 chr12 96239020 96239122 -25018408 - L1Md_F2 LINE L1 -392 6190 6095 3 1319 2774 82 5 0 chr12 96239123 96239499 -25018031 + L1_Mus1 LINE L1 6189 6566 -1 3 1319 22 0 0 0 chr12 96239528 96239550 -25017980 + AT_rich Low_complexity Low_complexity 1 22 0 3 1319 680 255 0 7 chr12 96239558 96239696 -25017834 + ID_B1 SINE B4 87 223 -1 3 1319 756 304 54 68 chr12 96239729 96240156 -25017374 + L1MC3 LINE L1 4888 5308 -838 3 1319 565 311 139 41 chr12 96240205 96240818 -25016712 + L1MC3 LINE L1 5400 6072 -1713 3 1319 189 0 0 0 chr12 96241314 96241335 -25016195 + (TAAAAA)n Simple_repeat Simple_repeat 3 23 0 3 1319 23 0 0 0 chr12 96241508 96241531 -25015999 + AT_rich Low_complexity Low_complexity 1 23 0 3 1319 314 45 23 0 chr12 96241764 96241808 -25015722 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 3 1319 1459 317 143 50 chr12 96241815 96242593 -25014937 - Lx5 LINE L1 -51 7409 6456 3 1319 1422 275 72 67 chr12 96242578 96242690 -25014840 + Lx5 LINE L1 5799 5887 -1163 3 1319 800 131 62 12 chr12 96242690 96242852 -25014678 - Lx2 LINE L1 -1 6996 6827 3 1319 1422 275 72 67 chr12 96242852 96243292 -25014238 + Lx5 LINE L1 5888 6354 -696 3 1319 615 306 73 28 chr12 96243440 96243726 -25013804 - MER46C DNA MER2_type -35 303 5 3 1319 10367 23 1 2 chr12 96244038 96245260 -25012270 + L1_Mm LINE L1 4367 5616 -540 3 1319 8529 28 0 0 chr12 96245260 96246254 -25011276 + L1Md_T LINE L1 5588 6581 -1 3 1319 1374 246 23 16 chr12 96246254 96246323 -25011207 + L1_Mm LINE L1 5617 5689 -467 3 1319 2250 166 112 5 chr12 96246700 96247009 -25010521 + RLTR19 LTR ERVK 2 315 -184 3 1319 621 49 0 0 chr12 96247009 96247090 -25010440 + (TTTTG)n Simple_repeat Simple_repeat 2 82 0 3 1319 2250 166 112 5 chr12 96247090 96247228 -25010302 + RLTR19 LTR ERVK 316 497 -2 3 1319 1126 87 69 6 chr12 96248845 96249018 -25008512 - B2_Mm2 SINE B2 -9 186 3 3 1319 632 161 28 11 chr12 96250053 96250215 -25007315 + (TA)n Simple_repeat Simple_repeat 1 164 0 3 1319 217 22 0 133 chr12 96250215 96250320 -25007210 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 3 1319 632 161 28 11 chr12 96250320 96250333 -25007197 + (TA)n Simple_repeat Simple_repeat 1 14 0 3 1319 304 332 186 17 chr12 96250445 96250687 -25006843 - MLT2D LTR ERVL -107 307 25 3 1319 306 282 13 0 chr12 96251599 96251677 -25005853 - ID4_ SINE ID -3 80 2 3 1319 181 286 41 0 chr12 96252403 96252452 -25005078 - MIR SINE MIR -69 139 89 3 1319 24 32 0 0 chr12 96252503 96252534 -25004996 + AT_rich Low_complexity Low_complexity 1 31 0 3 1319 388 298 81 19 chr12 96252541 96252738 -25004792 - MLT1A LTR MaLR -11 397 177 3 1319 579 117 0 0 chr12 96252931 96253034 -25004496 + (TG)n Simple_repeat Simple_repeat 1 103 0 3 1319 334 390 0 34 chr12 96253057 96253203 -25004327 - RSINE1 SINE B4 -22 143 3 3 1319 715 50 0 20 chr12 96254050 96254152 -25003378 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 3 1319 6745 226 75 81 chr12 96254727 96256666 -25000864 + L1_Mus2 LINE L1 2914 4838 -1048 3 1319 396 0 0 0 chr12 96256666 96256710 -25000820 + (CCA)n Simple_repeat Simple_repeat 3 46 0 3 1319 7114 147 43 36 chr12 96256710 96258441 -24999089 + L1_Mus2 LINE L1 4839 6565 -1 3 1319 247 330 113 0 chr12 96258465 96258571 -24998959 - MLT2D LTR ERVL -296 118 1 3 1319 764 303 22 6 chr12 96259581 96259760 -24997770 + B3A SINE B2 1 182 -16 3 1319 213 39 0 0 chr12 96259780 96259806 -24997724 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1319 751 78 26 0 chr12 96262355 96262470 -24995060 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 3 1319 3008 140 19 2 chr12 96263550 96264031 -24993499 + Lx3_Mus LINE L1 6510 6998 -11 3 1319 219 88 0 0 chr12 96264032 96264066 -24993464 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 3 1319 386 324 40 76 chr12 96265417 96265641 -24991889 + B3 SINE B2 1 216 0 3 1319 25 51 0 0 chr12 96266307 96266346 -24991184 + AT_rich Low_complexity Low_complexity 1 39 0 3 1319 243 0 0 0 chr12 96266491 96266518 -24991012 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1319 21 0 0 0 chr12 96266672 96266693 -24990837 + AT_rich Low_complexity Low_complexity 1 21 0 3 1319 307 153 44 29 chr12 96267208 96267285 -24990245 - ORR1D-int LTR MaLR -1430 79 1 3 1319 447 52 0 0 chr12 96267390 96267448 -24990082 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1319 756 271 146 76 chr12 96268039 96268681 -24988849 - MT2A LTR ERVL -40 561 1 3 1319 364 291 0 0 chr12 96272638 96272724 -24984806 + BC1_Mm scRNA scRNA 2 87 -65 3 1319 398 162 0 8 chr12 96273025 96273143 -24984387 + CT-rich Low_complexity Low_complexity 2 118 0 3 1319 5241 211 116 11 chr12 96273347 96274210 -24983320 + Lx7 LINE L1 4153 5113 -767 3 1319 1951 250 139 74 chr12 96274210 96275018 -24982512 + RMER13A LTR ERVK 1 860 0 3 1319 5241 211 116 11 chr12 96275018 96275637 -24981893 + Lx7 LINE L1 5114 5790 -90 3 1319 3288 273 47 31 chr12 96275673 96276862 -24980668 + RMER1A Other Other 2 1026 -4 3 1319 1092 252 70 28 chr12 96276855 96277312 -24980218 + Lx7 LINE L1 5779 6254 -1442 3 1319 461 300 31 12 chr12 96277306 96277399 -24980131 + Lx6 LINE L1 6572 6663 -797 3 1319 333 68 0 0 chr12 96277399 96277443 -24980087 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 4 1319 461 300 31 12 chr12 96277443 96277511 -24980019 + Lx6 LINE L1 6664 6735 -725 3 1319 519 17 0 0 chr12 96277511 96277571 -24979959 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1319 1320 43 0 0 chr12 96277571 96277734 -24979796 + (GAA)n Simple_repeat Simple_repeat 3 165 0 4 1319 233 194 16 31 chr12 96277747 96277811 -24979719 + GA-rich Low_complexity Low_complexity 3 65 0 4 1319 228 135 0 0 chr12 96277813 96277850 -24979680 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 4 1319 1244 242 4 14 chr12 96277854 96278154 -24979376 + L1_Mur3 LINE L1 5503 5838 -286 4 1319 29 0 0 0 chr12 96278242 96278271 -24979259 + AT_rich Low_complexity Low_complexity 1 29 0 4 1319 1150 55 7 20 chr12 96278271 96278420 -24979110 - B1_Mus2 SINE Alu 0 147 1 4 1319 612 50 0 0 chr12 96279963 96280043 -24977487 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 1319 259 333 92 15 chr12 96281155 96281199 -24976331 - L1ME1 LINE L1 -207 5972 5926 4 1319 513 0 0 0 chr12 96281199 96281256 -24976274 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1319 263 327 85 34 chr12 96281256 96281486 -24976044 - L1ME1 LINE L1 -254 5925 5683 4 1319 23 0 0 0 chr12 96281776 96281799 -24975731 + AT_rich Low_complexity Low_complexity 1 23 0 4 1319 459 0 0 0 chr12 96281858 96281909 -24975621 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1319 388 315 16 9 chr12 96281995 96282138 -24975392 - Lx7 LINE L1 -1730 5743 5596 4 1319 225 0 0 0 chr12 96282385 96282410 -24975120 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1319 7875 62 1 4 chr12 96282550 96284033 -24973497 - L1Md_F2 LINE L1 -12 6570 5091 4 1319 259 302 12 0 chr12 96284602 96284688 -24972842 + CT-rich Low_complexity Low_complexity 2 88 0 4 1319 490 250 62 15 chr12 96284692 96284822 -24972708 - B1_Mur3 SINE Alu -8 141 6 4 1319 188 140 0 39 chr12 96284827 96284879 -24972651 + T-rich Low_complexity Low_complexity 2 51 0 4 1319 390 21 0 0 chr12 96285755 96285802 -24971728 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1319 618 355 19 5 chr12 96285886 96286098 -24971432 + B3 SINE B2 2 216 0 4 1319 1057 129 5 86 chr12 96286303 96286524 -24971006 + Lx LINE L1 6447 6649 -5 4 1319 1079 93 12 0 chr12 96286650 96286811 -24970719 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 4 1319 487 62 12 12 chr12 96287545 96287626 -24969904 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1319 925 164 26 2 chr12 96287714 96287885 -24969645 - Lx2B LINE L1 -455 6545 6375 4 1319 1085 64 0 14 chr12 96288027 96288169 -24969361 + B1_Mm SINE Alu 3 142 -5 4 1319 22 0 0 0 chr12 96289600 96289622 -24967908 + AT_rich Low_complexity Low_complexity 1 22 0 4 1319 609 286 96 115 chr12 96289631 96290006 -24967524 + ORR1D2 LTR MaLR 3 370 0 4 1319 485 303 59 48 chr12 96290994 96291181 -24966349 + ORR1D2 LTR MaLR 27 215 -155 4 1319 639 307 124 0 chr12 96291500 96291741 -24965789 - ORR1D2 LTR MaLR -29 341 71 4 1319 484 317 0 99 chr12 96292059 96292241 -24965289 + RSINE1 SINE B4 2 165 0 4 1319 465 19 0 0 chr12 96292246 96292300 -24965230 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1319 1323 283 52 43 chr12 96292343 96292577 -24964953 + RMER4A LTR ERVK 17 253 -213 4 1319 182 91 30 0 chr12 96292577 96292610 -24964920 + (CTG)n Simple_repeat Simple_repeat 2 35 0 4 1319 1323 283 52 43 chr12 96292610 96292821 -24964709 + RMER4A LTR ERVK 254 466 0 4 1319 634 191 17 123 chr12 96293697 96293876 -24963654 - Lx3C LINE L1 -2 6974 6815 4 1319 22 0 0 0 chr12 96293889 96293911 -24963619 + AT_rich Low_complexity Low_complexity 1 22 0 4 1319 453 357 74 26 chr12 96294002 96294272 -24963258 + B4A SINE B4 8 290 -2 4 1319 436 346 62 14 chr12 96295919 96296127 -24961403 - MLT1E2 LTR MaLR -388 239 22 4 1319 187 354 24 0 chr12 96296683 96296765 -24960765 - L2c LINE L2 -43 3344 3261 4 1319 277 241 76 0 chr12 96297522 96297601 -24959929 + Lx5 LINE L1 6959 7043 -7 4 1319 545 40 13 0 chr12 96298125 96298201 -24959329 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 4 1319 198 191 0 0 chr12 96298212 96298254 -24959276 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1319 477 110 0 0 chr12 96298405 96298478 -24959052 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1319 5552 72 0 6 chr12 96298568 96299292 -24958238 - L1_Mus1 LINE L1 0 6567 5848 4 1319 396 0 0 0 chr12 96299538 96299582 -24957948 + (TTA)n Simple_repeat Simple_repeat 1 44 0 4 1319 379 300 44 90 chr12 96299697 96299864 -24957666 - RSINE1 SINE B4 -2 163 3 4 1319 1781 162 16 64 chr12 96300242 96300617 -24956913 - Lx3C LINE L1 -10 6966 6610 4 1319 1013 188 100 26 chr12 96300617 96300847 -24956683 - Lx3C LINE L1 -662 6314 6068 4 1319 2468 168 4 13 chr12 96300834 96301298 -24956232 - L1_Mur1 LINE L1 -1940 3946 3487 4 1319 17368 158 80 12 chr12 96301300 96304186 -24953344 - L1_Mus4 LINE L1 -15 6621 3353 4 1319 6876 21 1 0 chr12 96304186 96304979 -24952551 - L1Md_A LINE L1 0 6582 5789 4 1319 17368 185 114 11 chr12 96304979 96305529 -24952001 - L1_Mus4 LINE L1 -2534 3352 2794 4 1319 243 0 0 0 chr12 96305529 96305556 -24951974 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1319 17368 195 88 14 chr12 96305556 96307816 -24949714 - L1_Mus4 LINE L1 -3093 2793 70 4 1319 21 36 0 0 chr12 96308065 96308093 -24949437 + AT_rich Low_complexity Low_complexity 1 28 0 4 1319 257 328 87 8 chr12 96308183 96308309 -24949221 - L2a LINE L2 -203 3223 3088 4 1319 188 369 62 0 chr12 96308506 96308636 -24948894 - L2a LINE L2 -589 2830 2693 4 1319 21 71 0 0 chr12 96309020 96309062 -24948468 + AT_rich Low_complexity Low_complexity 1 42 0 4 1319 459 0 0 0 chr12 96309252 96309303 -24948227 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1319 203 309 101 16 chr12 96309722 96309889 -24947641 - MIR SINE MIR -53 209 29 4 1319 678 109 0 0 chr12 96310137 96310238 -24947292 + (GGA)n Simple_repeat Simple_repeat 3 103 0 4 1319 796 285 101 38 chr12 96310953 96311459 -24946071 - L1MA8 LINE L1 -2 6289 5752 4 1319 279 0 0 0 chr12 96311911 96311942 -24945588 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1319 196 213 0 113 chr12 96311978 96312031 -24945499 + L3 LINE CR1 1117 1163 -3326 4 1319 333 286 0 67 chr12 96312429 96312549 -24944981 + RLTR12B LTR ERVK 47 158 -370 4 1319 243 0 0 0 chr12 96312553 96312580 -24944950 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1319 1010 129 0 13 chr12 96312580 96312729 -24944801 - B1_Mus2 SINE Alu 0 147 1 4 1319 243 281 58 0 chr12 96312622 96312743 -24944787 - ORR1B1-int LTR MaLR -755 754 627 4 1319 1091 137 30 0 chr12 96312905 96313102 -24944428 - Lx3_Mus LINE L1 0 7009 6807 4 1319 374 304 78 48 chr12 96313125 96313395 -24944135 + RLTR12B LTR ERVK 226 503 -25 4 1319 198 0 0 0 chr12 96313510 96313532 -24943998 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4 1319 548 314 25 12 chr12 96314723 96314884 -24942646 + RSINE1 SINE B4 3 165 0 4 1319 603 168 0 0 chr12 96315217 96315336 -24942194 + (TG)n Simple_repeat Simple_repeat 1 119 0 4 1319 360 59 0 0 chr12 96315348 96315399 -24942131 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 1319 204 70 0 65 chr12 96315715 96315761 -24941769 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4 1319 376 289 0 22 chr12 96316380 96316472 -24941058 - PB1D10 SINE Alu -5 112 23 4 1319 33210 72 18 2 chr12 96316681 96322598 -24934932 - L1Md_F2 LINE L1 -1 6581 570 4 1319 826 214 131 71 chr12 96323399 96323651 -24933879 - RLTR25B LTR ERVK -2 1026 760 4 1319 1427 74 0 0 chr12 96323844 96324034 -24933496 + L1_Mus1 LINE L1 6378 6567 0 4 1319 228 196 19 19 chr12 96324051 96324103 -24933427 - U7 snRNA snRNA -6 57 6 4 1319 2920 191 73 30 chr12 96324189 96324233 -24933297 - RLTR25B LTR ERVK -170 858 795 4 1319 348 48 48 0 chr12 96324233 96324296 -24933234 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1319 2920 191 73 30 chr12 96324296 96324461 -24933069 - RLTR25B LTR ERVK -234 794 608 4 1319 648 0 0 0 chr12 96324461 96324533 -24932997 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 4 1319 2920 191 73 30 chr12 96324533 96324562 -24932968 - RLTR25B LTR ERVK -421 607 579 4 1319 207 0 0 0 chr12 96324562 96324585 -24932945 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1319 1137 70 0 0 chr12 96324592 96324734 -24932796 - B1_Mm SINE Alu -5 142 1 4 1319 2920 191 73 30 chr12 96324734 96325156 -24932374 - RLTR25B LTR ERVK -450 578 161 4 1319 198 0 0 0 chr12 96325202 96325224 -24932306 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1319 372 125 0 0 chr12 96325757 96325821 -24931709 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 4 1319 186 103 0 0 chr12 96325844 96325873 -24931657 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1319 579 15 0 0 chr12 96325929 96325997 -24931533 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 4 1319 7668 149 55 5 chr12 96326005 96326868 -24930662 - Lx2B LINE L1 -1 6999 6083 4 1319 369 0 0 0 chr12 96326868 96326909 -24930621 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1319 7668 153 46 4 chr12 96326909 96327501 -24930029 - Lx2B LINE L1 -918 6082 5479 4 1319 806 205 56 6 chr12 96327504 96327666 -24929864 - ORR1A1-int LTR MaLR -1719 244 75 4 1319 1568 146 0 4 chr12 96327683 96327924 -24929606 - ORR1A1 LTR MaLR -8 338 99 4 1319 483 222 38 68 chr12 96327924 96328152 -24929378 - L1VL4 LINE L1 -5675 660 443 4 1319 249 139 0 0 chr12 96329885 96329928 -24927602 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 4 1319 24 32 0 0 chr12 96330034 96330065 -24927465 + AT_rich Low_complexity Low_complexity 1 31 0 4 1319 1055 98 0 0 chr12 96330077 96330220 -24927310 - B1_Mus1 SINE Alu -4 144 2 4 1319 3801 241 59 51 chr12 96330773 96331031 -24926499 - Lx5 LINE L1 0 7050 6812 4 1319 213 39 0 0 chr12 96331031 96331057 -24926473 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 4 1319 3801 241 59 51 chr12 96331057 96331941 -24925589 - Lx5 LINE L1 -239 6811 5899 4 1319 301 97 0 46 chr12 96332003 96332068 -24925462 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 4 1319 687 236 20 0 chr12 96333428 96333576 -24923954 + ORR1D1 LTR MaLR 1 151 -223 4 1319 2723 154 102 26 chr12 96333799 96334427 -24923103 - Lx2 LINE L1 -352 6645 6024 4 1319 29 28 0 0 chr12 96336581 96336617 -24920913 + AT_rich Low_complexity Low_complexity 1 36 0 4 1319 207 204 0 0 chr12 96337013 96337067 -24920463 + CT-rich Low_complexity Low_complexity 2 55 0 4 1319 335 226 10 0 chr12 96337070 96337172 -24920358 + (TA)n Simple_repeat Simple_repeat 2 104 0 4 1319 424 32 32 0 chr12 96337207 96337269 -24920261 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1319 1116 58 0 0 chr12 96337269 96337406 -24920124 - B1_Mus2 SINE Alu -10 137 1 5 1320 317 109 18 0 chr12 96338035 96338090 -24919440 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 5 1320 243 365 65 65 chr12 96338348 96338638 -24918892 - MLT1H2 LTR MaLR -114 375 86 5 1320 446 309 61 0 chr12 96338963 96339149 -24918381 + MER102b DNA MER1_type 50 265 -76 5 1320 646 127 35 24 chr12 96342705 96342874 -24914656 + (TCTA)n Simple_repeat Simple_repeat 3 173 0 5 1320 1864 135 73 13 chr12 96344880 96345181 -24912349 + ORR1A2 LTR MaLR 1 319 -8 5 1320 2729 123 7 5 chr12 96345231 96345640 -24911890 - L1_Mus3 LINE L1 -7 6631 6222 5 1320 515 366 54 48 chr12 96346358 96346731 -24910799 + MLT1B LTR MaLR 14 388 -2 5 1320 1623 65 0 0 chr12 96346967 96347183 -24910347 + L1Md_F2 LINE L1 6365 6580 -2 5 1320 21 0 0 0 chr12 96349733 96349754 -24907776 + AT_rich Low_complexity Low_complexity 1 21 0 5 1320 201 39 0 0 chr12 96349826 96349852 -24907678 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 5 1320 558 211 91 13 chr12 96349858 96350012 -24907518 + Lx7 LINE L1 5661 5826 -1870 5 1320 4598 275 84 17 chr12 96351326 96351891 -24905639 - Lx6 LINE L1 -9 7451 6868 5 1320 3009 88 0 0 chr12 96351891 96352289 -24905241 - MTB LTR MaLR -2 398 1 5 1320 4598 275 84 17 chr12 96352289 96352397 -24905133 - Lx6 LINE L1 -593 6867 6751 5 1320 396 0 0 0 chr12 96352397 96352441 -24905089 + (TCC)n Simple_repeat Simple_repeat 2 45 0 5 1320 4598 275 84 17 chr12 96352441 96353141 -24904389 - Lx6 LINE L1 -710 6750 5985 5 1320 28 0 0 0 chr12 96353349 96353377 -24904153 + AT_rich Low_complexity Low_complexity 1 28 0 5 1320 491 186 25 58 chr12 96353810 96353930 -24903600 + Lx7 LINE L1 6537 6652 -2 5 1320 2302 228 82 15 chr12 96355446 96356042 -24901488 - Lx2B LINE L1 0 7000 6365 5 1320 280 175 94 59 chr12 96356080 96356165 -24901365 - RLTR42 LTR ERVK 0 239 152 5 1320 497 250 62 41 chr12 96356602 96356748 -24900782 + B1_Mur4 SINE Alu 1 149 -1 5 1320 266 177 49 25 chr12 96356766 96356847 -24900683 + A-rich Low_complexity Low_complexity 4 86 0 5 1320 431 78 16 0 chr12 96357628 96357692 -24899838 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1320 586 294 144 5 chr12 96358850 96359038 -24898492 - ID_B1 SINE B4 -5 219 6 5 1320 228 293 0 26 chr12 96359851 96359928 -24897602 + CT-rich Low_complexity Low_complexity 40 114 0 5 1320 7793 56 2 2 chr12 96360017 96361647 -24895883 - L1Md_F3 LINE L1 -3 6581 4952 5 1320 282 29 0 0 chr12 96362119 96362154 -24895376 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1320 4949 88 40 0 chr12 96362415 96363108 -24894422 + Lx3_Mus LINE L1 6285 7005 -4 5 1320 25 0 0 0 chr12 96363108 96363133 -24894397 + AT_rich Low_complexity Low_complexity 1 25 0 5 1320 3592 49 2 2 chr12 96364008 96364455 -24893075 - L1Md_F2 LINE L1 0 6582 6136 5 1320 533 312 35 0 chr12 96365287 96365431 -24892099 + RSINE1 SINE B4 1 149 -16 5 1320 298 344 71 101 chr12 96366616 96366984 -24890546 + ORR1E LTR MaLR 3 359 0 5 1320 276 127 0 0 chr12 96368701 96368756 -24888774 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1320 623 150 0 62 chr12 96368805 96369051 -24888479 + (TG)n Simple_repeat Simple_repeat 1 230 0 5 1320 183 42 0 0 chr12 96369090 96369114 -24888416 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1320 28 29 0 0 chr12 96369368 96369403 -24888127 + AT_rich Low_complexity Low_complexity 1 35 0 5 1320 205 343 27 21 chr12 96369437 96369528 -24888002 - MIR SINE MIR -88 188 86 5 1320 324 0 0 0 chr12 96370580 96370616 -24886914 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1320 303 49 0 0 chr12 96370616 96370656 -24886874 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1320 500 168 9 17 chr12 96370675 96370790 -24886740 - Lx9 LINE L1 -8 7636 7523 5 1320 240 111 0 0 chr12 96372445 96372481 -24885049 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 1320 1864 40 0 0 chr12 96374215 96374443 -24883087 - L1Md_A LINE L1 -1 6581 6354 5 1320 719 324 29 21 chr12 96374466 96374747 -24882783 + B4 SINE B4 4 286 -6 5 1320 315 302 19 9 chr12 96374829 96374936 -24882594 - MLT1E1A LTR MaLR -2 678 571 5 1320 255 331 75 0 chr12 96374947 96375080 -24882450 - RMER15 LTR ERVL -5 570 428 5 1320 235 269 13 0 chr12 96375635 96375713 -24881817 - Lx9 LINE L1 -6 7638 7560 5 1320 1937 244 10 39 chr12 96375835 96376318 -24881212 + Lx5 LINE L1 6579 7047 -3 5 1320 364 245 32 20 chr12 96376332 96376469 -24881061 + Lx9 LINE L1 5740 5914 -1730 5 1320 322 314 132 55 chr12 96376584 96376857 -24880673 - L1M5 LINE L1 -3631 2515 2222 5 1320 213 240 0 0 chr12 96376969 96377019 -24880511 + T-rich Low_complexity Low_complexity 1 50 0 5 1320 684 248 0 39 chr12 96377269 96377424 -24880106 + B1_Mur3 SINE Alu 1 149 0 5 1320 405 125 38 9 chr12 96377426 96377531 -24879999 + (CAAAC)n Simple_repeat Simple_repeat 1 108 0 5 1320 222 0 79 0 chr12 96377902 96377940 -24879590 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1320 1013 44 88 0 chr12 96377950 96378086 -24879444 - B1_Mus1 SINE Alu 0 148 1 5 1320 21 71 0 0 chr12 96378646 96378688 -24878842 + AT_rich Low_complexity Low_complexity 1 42 0 5 1320 557 298 95 5 chr12 96379177 96379366 -24878164 + B3 SINE B2 5 210 -6 5 1320 395 325 31 31 chr12 96379400 96379530 -24878000 + RSINE1 SINE B4 2 131 -34 5 1320 288 0 0 0 chr12 96379601 96379633 -24877897 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 5 1320 343 312 64 0 chr12 96380534 96380643 -24876887 - RSINE1 SINE B4 -36 129 14 5 1320 3693 47 2 0 chr12 96380773 96381221 -24876309 + L1Md_F2 LINE L1 6121 6569 -13 5 1320 23 68 0 0 chr12 96381230 96381274 -24876256 + AT_rich Low_complexity Low_complexity 1 44 0 5 1320 532 220 87 0 chr12 96381276 96381426 -24876104 - Lx5 LINE L1 -3 7047 6885 5 1320 3091 223 16 5 chr12 96381423 96382037 -24875493 + Lx5 LINE L1 6276 6896 -154 5 1320 470 358 37 5 chr12 96383385 96383573 -24873957 - MLT1A0 LTR MaLR 0 365 172 5 1320 215 225 14 0 chr12 96386152 96386223 -24871307 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1320 21 0 0 0 chr12 96386555 96386576 -24870954 + AT_rich Low_complexity Low_complexity 1 21 0 5 1320 751 289 111 43 chr12 96386814 96387613 -24869917 - L1MA7 LINE L1 -142 6149 5296 5 1320 1479 103 30 8 chr12 96387703 96387937 -24869593 - L1Md_F2 LINE L1 -2 6580 6342 5 1320 832 48 0 0 chr12 96387937 96388040 -24869490 + L1Md_F2 LINE L1 6225 6327 -255 5 1320 309 341 28 42 chr12 96388041 96388185 -24869345 - L1MA7 LINE L1 -1151 4992 4851 5 1320 1838 251 58 49 chr12 96388318 96388866 -24868664 - RMER2 LTR ERV1 -14 553 1 5 1320 1134 57 0 0 chr12 96388983 96389123 -24868407 + B1_Mus1 SINE Alu 3 142 -6 5 1320 180 0 0 0 chr12 96389124 96389144 -24868386 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1320 341 279 38 16 chr12 96389257 96389443 -24868087 + L1M2 LINE L1 5132 5321 -822 5 1320 477 84 0 0 chr12 96390247 96390318 -24867212 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 5 1320 316 314 28 14 chr12 96390470 96390612 -24866918 + Tigger5 DNA MER2_type 2132 2275 -131 5 1320 391 263 66 66 chr12 96391023 96391206 -24866324 - B3A SINE B2 -15 183 1 5 1320 21 36 0 0 chr12 96391379 96391407 -24866123 + AT_rich Low_complexity Low_complexity 1 28 0 5 1320 256 305 12 24 chr12 96392607 96392732 -24864798 - MIRc SINE MIR -106 162 37 5 1320 192 97 0 0 chr12 96393166 96393197 -24864333 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1320 235 201 35 21 chr12 96393192 96393334 -24864196 + (TA)n Simple_repeat Simple_repeat 1 144 0 5 1320 463 274 117 62 chr12 96393838 96394017 -24863513 + B4A SINE B4 31 219 -73 5 1320 25 0 0 0 chr12 96395124 96395149 -24862381 + AT_rich Low_complexity Low_complexity 1 25 0 5 1320 665 308 40 0 chr12 96395277 96395475 -24862055 - B3 SINE B2 -6 210 5 5 1320 1395 50 0 0 chr12 96395647 96396881 -24860649 + (CA)n Simple_repeat Simple_repeat 1 1234 0 5 1320 381 58 0 0 chr12 96396894 96396946 -24860584 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1320 382 321 54 8 chr12 96396999 96397238 -24860292 - L1MEg LINE L1 -1277 4869 4620 5 1320 564 95 0 0 chr12 96398275 96398359 -24859171 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 5 1320 24 0 0 0 chr12 96398537 96398561 -24858969 + AT_rich Low_complexity Low_complexity 1 24 0 5 1320 615 291 42 33 chr12 96398561 96398774 -24858756 - B3 SINE B2 0 216 2 5 1320 288 323 26 0 chr12 96398788 96398943 -24858587 - L1MEg LINE L1 -5253 989 831 5 1320 920 98 0 0 chr12 96399239 96399372 -24858158 - L1_Mus1 LINE L1 -1 6566 6434 5 1320 2324 70 0 7 chr12 96399372 96399674 -24857856 + L1_Mus1 LINE L1 6138 6437 -130 5 1320 849 80 0 0 chr12 96399665 96399777 -24857753 - L1_Mus2 LINE L1 -21 6545 6434 5 1320 741 102 0 0 chr12 96400042 96400150 -24857380 + (GAAA)n Simple_repeat Simple_repeat 2 109 0 5 1320 931 280 45 24 chr12 96400319 96400608 -24856922 + Lx6 LINE L1 7132 7426 -34 5 1320 186 43 0 0 chr12 96400616 96400639 -24856891 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1320 614 317 111 19 chr12 96400666 96401270 -24856260 + L1MA4 LINE L1 5280 5936 -364 5 1320 187 311 0 22 chr12 96401356 96401402 -24856128 + MIR SINE MIR 49 93 -169 5 1320 5645 128 41 5 chr12 96401742 96402671 -24854859 - Lx3A LINE L1 0 6981 6020 5 1320 229 288 56 8 chr12 96402770 96402896 -24854634 - L1MC3 LINE L1 -222 7773 7642 5 1320 230 300 14 0 chr12 96402957 96403027 -24854503 - L1MC3 LINE L1 -437 7348 7278 5 1320 250 157 0 67 chr12 96403774 96403863 -24853667 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 5 1320 331 331 25 18 chr12 96403897 96404060 -24853470 - Ricksha DNA MuDR -2728 518 355 5 1320 387 364 89 5 chr12 96404115 96404371 -24853159 + LTR40b LTR ERVL 105 406 -59 5 1320 214 195 0 0 chr12 96404490 96404531 -24852999 + T-rich Low_complexity Low_complexity 1 41 0 5 1320 5292 107 20 9 chr12 96404554 96405338 -24852192 - Lx3_Mus LINE L1 -16 6993 6201 5 1320 191 114 23 0 chr12 96405745 96405789 -24851741 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 5 1320 203 278 30 20 chr12 96406257 96406356 -24851174 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 1320 348 234 45 39 chr12 96406325 96406503 -24851027 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 1320 263 255 18 48 chr12 96406483 96406648 -24850882 + (CATA)n Simple_repeat Simple_repeat 3 162 0 6 1320 261 75 0 0 chr12 96407529 96407569 -24849961 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1320 27 73 0 0 chr12 96409945 96410000 -24847530 + AT_rich Low_complexity Low_complexity 1 55 0 6 1320 224 211 0 34 chr12 96410081 96410140 -24847390 + A-rich Low_complexity Low_complexity 3 59 0 6 1320 1474 189 6 1 chr12 96410438 96410724 -24846806 - Lx3_Mus LINE L1 -1318 5691 5415 6 1320 405 0 0 0 chr12 96410951 96410996 -24846534 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1320 181 98 0 47 chr12 96411481 96411524 -24846006 + (TTAAA)n Simple_repeat Simple_repeat 5 45 0 6 1320 822 48 0 0 chr12 96411531 96411634 -24845896 + (TC)n Simple_repeat Simple_repeat 2 104 0 6 1320 1093 102 0 0 chr12 96411634 96411781 -24845749 - B1_Mus1 SINE Alu 0 148 2 6 1320 352 0 42 0 chr12 96411861 96411909 -24845621 + (CAA)n Simple_repeat Simple_repeat 2 51 0 6 1320 22 0 0 0 chr12 96412589 96412611 -24844919 + AT_rich Low_complexity Low_complexity 1 22 0 6 1320 21 0 0 0 chr12 96412662 96412683 -24844847 + AT_rich Low_complexity Low_complexity 1 21 0 6 1320 1712 124 4 0 chr12 96412885 96413160 -24844370 + Lx LINE L1 6373 6648 -6 6 1320 23 0 0 0 chr12 96413283 96413306 -24844224 + AT_rich Low_complexity Low_complexity 1 23 0 6 1320 457 83 24 0 chr12 96413366 96413450 -24844080 + (CA)n Simple_repeat Simple_repeat 2 87 0 6 1320 25 31 0 0 chr12 96413510 96413542 -24843988 + AT_rich Low_complexity Low_complexity 1 32 0 6 1320 25 0 0 0 chr12 96414902 96414927 -24842603 + AT_rich Low_complexity Low_complexity 1 25 0 6 1320 780 128 0 0 chr12 96415220 96415353 -24842177 + (CA)n Simple_repeat Simple_repeat 2 134 0 6 1320 663 298 42 81 chr12 96417569 96417828 -24839702 + B4A SINE B4 9 257 -35 6 1320 396 0 0 0 chr12 96417901 96417945 -24839585 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1320 474 18 0 0 chr12 96417945 96417999 -24839531 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1320 205 300 0 54 chr12 96418679 96418753 -24838777 - L2c LINE L2 -40 3347 3278 6 1320 315 0 0 0 chr12 96419753 96419788 -24837742 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1320 266 0 0 0 chr12 96420285 96420324 -24837206 + Lx LINE L1 6610 6648 -6 6 1320 253 378 38 62 chr12 96420361 96420601 -24836929 - ORR1D2 LTR MaLR -132 238 5 6 1320 1305 269 78 8 chr12 96420603 96420963 -24836567 + MTC LTR MaLR 1 385 -36 6 1320 229 200 0 0 chr12 96421091 96421136 -24836394 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1320 288 0 0 0 chr12 96422449 96422481 -24835049 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 6 1320 268 45 0 0 chr12 96422527 96422571 -24834959 - Lx2 LINE L1 -1 6996 6953 6 1320 2881 162 15 0 chr12 96422572 96423034 -24834496 + RMER13B LTR ERVK 1 469 -439 6 1320 21 36 0 0 chr12 96424068 96424096 -24833434 + AT_rich Low_complexity Low_complexity 1 28 0 6 1320 558 0 0 0 chr12 96424924 96424986 -24832544 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 6 1320 24 0 0 0 chr12 96426904 96426928 -24830602 + AT_rich Low_complexity Low_complexity 1 24 0 6 1320 3266 85 13 17 chr12 96426987 96427455 -24830075 - L1_Mus2 LINE L1 0 6566 6101 6 1320 610 281 25 44 chr12 96427530 96427690 -24829840 + RSINE1 SINE B4 9 165 0 6 1320 5027 96 10 4 chr12 96427711 96428426 -24829104 + L1_Mus4 LINE L1 5917 6635 -1 6 1320 5802 28 0 0 chr12 96428427 96429106 -24828424 + L1Md_A LINE L1 5904 6582 0 6 1320 904 316 78 20 chr12 96429315 96429660 -24827870 + MTE2b LTR MaLR 1 365 -14 6 1320 346 333 57 83 chr12 96430639 96430940 -24826590 - L1ME1 LINE L1 -159 6020 5728 6 1320 872 66 0 0 chr12 96430963 96431107 -24826423 + L1_Mus1 LINE L1 6443 6567 0 6 1320 23 0 0 0 chr12 96431107 96431130 -24826400 + AT_rich Low_complexity Low_complexity 1 23 0 6 1320 669 361 99 41 chr12 96431131 96432286 -24825244 - L1MD LINE L1 -1153 4993 3755 6 1320 210 207 0 0 chr12 96432286 96432344 -24825186 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1320 1713 44 13 4 chr12 96432568 96432795 -24824735 + L1Md_F2 LINE L1 6352 6580 -2 6 1320 381 273 9 120 chr12 96433050 96433275 -24824255 - L1MD LINE L1 -2849 3297 3098 6 1320 254 308 101 46 chr12 96433472 96433581 -24823949 + MLT1H2 LTR MaLR 194 308 -181 6 1320 229 390 66 66 chr12 96433631 96433859 -24823671 + MLT1A0 LTR MaLR 32 259 -106 6 1320 2355 233 2 29 chr12 96433892 96434475 -24823055 - L1_Mur1 LINE L1 -73 5813 5247 6 1320 379 165 28 16 chr12 96434489 96434611 -24822919 - L1_Mur1 LINE L1 -590 5296 5158 6 1320 5189 208 34 24 chr12 96434610 96435772 -24821758 + Lx2B LINE L1 5812 6985 -15 6 1320 26 74 0 0 chr12 96437326 96437380 -24820150 + AT_rich Low_complexity Low_complexity 1 54 0 6 1320 657 213 0 0 chr12 96437411 96437585 -24819945 + (TA)n Simple_repeat Simple_repeat 1 174 0 6 1320 270 315 94 104 chr12 96437751 96437953 -24819577 - ID_B1 SINE B4 -12 212 13 6 1320 357 302 0 48 chr12 96438516 96438662 -24818868 - Lx5 LINE L1 0 7050 6912 6 1320 621 275 80 22 chr12 96439170 96439411 -24818119 - Lx8 LINE L1 -220 7253 6993 6 1320 671 82 0 20 chr12 96439411 96439511 -24818019 + MTA_Mm LTR MaLR 1 98 -298 6 1320 190 296 152 10 chr12 96439613 96439712 -24817818 - MIRc SINE MIR -57 211 99 6 1320 180 77 0 0 chr12 96440601 96440627 -24816903 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1320 1915 170 123 70 chr12 96440733 96441263 -24816267 - RLTR31_Mm LTR ERVK 0 561 4 6 1320 1374 83 0 0 chr12 96441605 96441847 -24815683 + (CA)n Simple_repeat Simple_repeat 1 242 0 6 1320 564 375 13 50 chr12 96442263 96442561 -24814969 + B4A SINE B4 6 292 0 6 1320 432 0 0 0 chr12 96442996 96443044 -24814486 + (TTA)n Simple_repeat Simple_repeat 2 49 0 6 1320 321 260 21 10 chr12 96444285 96444382 -24813148 + CT-rich Low_complexity Low_complexity 2 99 0 6 1320 1776 109 11 0 chr12 96445380 96445646 -24811884 - L1_Mus3 LINE L1 -4 6634 6366 6 1320 225 316 0 0 chr12 96446599 96446656 -24810874 + polypurine Low_complexity Low_complexity 1 57 0 6 1320 356 319 225 29 chr12 96447180 96447495 -24810035 + MLT2B1 LTR ERVL 21 402 -118 6 1320 470 312 103 13 chr12 96447819 96448121 -24809409 + L1M3 LINE L1 3973 4301 -1839 6 1320 3603 7 0 0 chr12 96448962 96449365 -24808165 + L1Md_A LINE L1 6180 6582 0 6 1320 21 0 0 0 chr12 96450035 96450056 -24807474 + AT_rich Low_complexity Low_complexity 1 21 0 6 1320 3268 192 85 57 chr12 96450186 96450785 -24806745 + RMER12B LTR ERVK 518 1174 -230 6 1320 549 0 0 0 chr12 96450785 96450846 -24806684 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1320 3268 192 85 57 chr12 96450846 96451109 -24806421 + RMER12B LTR ERVK 1175 1404 0 6 1320 214 333 0 22 chr12 96451120 96451209 -24806321 + CT-rich Low_complexity Low_complexity 2 88 0 6 1320 734 249 86 30 chr12 96451210 96451481 -24806049 - RLTR12B LTR ERVK -255 313 42 6 1320 183 80 0 0 chr12 96452144 96452169 -24805361 + (CATATA)n Simple_repeat Simple_repeat 4 28 0 6 1320 738 194 6 0 chr12 96452170 96452330 -24805200 + Lx2 LINE L1 6837 6997 0 6 1320 22 35 0 0 chr12 96452433 96452462 -24805068 + AT_rich Low_complexity Low_complexity 1 29 0 6 1320 376 329 22 7 chr12 96452462 96452600 -24804930 - B1_Mur2 SINE Alu 0 149 10 6 1320 403 344 6 6 chr12 96452833 96452991 -24804539 - Tigger7 DNA MER2_type -16 2475 2318 6 1320 533 98 36 0 chr12 96453061 96453173 -24804357 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 6 1320 818 278 74 10 chr12 96453187 96453485 -24804045 - Tigger7 DNA MER2_type -1394 1097 781 6 1320 566 227 34 84 chr12 96453536 96453714 -24803816 + RLTR31_Mur LTR ERVK 359 527 -26 6 1320 332 356 7 33 chr12 96453761 96453912 -24803618 - Tigger7 DNA MER2_type -2118 373 227 6 1320 261 306 54 0 chr12 96454865 96454976 -24802554 - L1M5 LINE L1 -359 5805 5689 6 1320 7232 111 8 1 chr12 96455177 96456983 -24800547 - L1_Mus2 LINE L1 0 6566 4750 6 1320 476 242 0 0 chr12 96456990 96457085 -24800445 - Lx7 LINE L1 -727 6969 6875 6 1320 1402 274 120 23 chr12 96457083 96457250 -24800280 - Lx7 LINE L1 -979 6717 6538 6 1320 261 57 0 0 chr12 96457250 96457285 -24800245 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1320 1402 274 120 23 chr12 96457285 96457633 -24799897 - Lx7 LINE L1 -1159 6537 6152 6 1320 997 225 140 171 chr12 96457641 96458262 -24799268 - RMER6A LTR ERVK -12 708 107 6 1320 27 29 0 0 chr12 96459201 96459235 -24798295 + AT_rich Low_complexity Low_complexity 1 34 0 6 1320 2638 187 35 0 chr12 96459319 96459801 -24797729 - RLTR19 LTR ERVK 0 499 1 6 1320 365 209 0 0 chr12 96459806 96459873 -24797657 - RLTR19-int LTR ERVK -2 6135 6069 6 1320 260 344 8 8 chr12 96459952 96460084 -24797446 - RLTR14-int LTR ERV1 -286 5031 4900 6 1320 278 316 25 58 chr12 96459977 96460098 -24797432 - RNERVK23-int LTR ERVK -691 7526 7410 6 1320 322 147 191 0 chr12 96460163 96460231 -24797299 - RLTR19-int LTR ERVK -110 6027 5947 6 1320 742 247 53 0 chr12 96460467 96460617 -24796913 - RLTR19-int LTR ERVK -529 5608 5451 6 1320 1002 90 28 7 chr12 96460628 96460773 -24796757 - B1_Mus1 SINE Alu 0 148 1 6 1320 2487 174 32 30 chr12 96460778 96461271 -24796259 - RLTR19-int LTR ERVK -1096 5041 4548 6 1320 826 136 70 19 chr12 96461342 96461500 -24796030 + Lx4B LINE L1 6651 6816 -242 6 1320 4055 185 60 7 chr12 96461500 96462317 -24795213 - RLTR19-int LTR ERVK -1584 4553 3694 6 1320 2160 160 3 8 chr12 96462317 96462683 -24794847 - RLTR19-int LTR ERVK -2944 3193 2830 6 1320 3486 171 47 33 chr12 96462680 96463407 -24794123 - RLTR19-int LTR ERVK -4904 1233 497 6 1320 1111 49 7 40 chr12 96463717 96463865 -24793665 - B1_Mus1 SINE Alu -5 143 1 6 1320 801 107 0 0 chr12 96464577 96464699 -24792831 + L1_Mus1 LINE L1 6446 6567 0 6 1320 644 337 11 22 chr12 96464931 96465116 -24792414 + B3A SINE B2 1 183 -15 6 1320 414 0 0 0 chr12 96465148 96465194 -24792336 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 6 1320 216 0 0 0 chr12 96467538 96467562 -24789968 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1320 558 0 0 0 chr12 96467847 96467909 -24789621 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 20 3413 138 185 2 chr12 96468489 96469111 -24788419 - RMER19A LTR ERVK -1 736 1 6 1321 24 0 0 0 chr12 96469122 96469146 -24788384 + AT_rich Low_complexity Low_complexity 1 24 0 6 1321 4590 245 55 17 chr12 96469165 96470299 -24787231 - Lx5 LINE L1 -7 7043 5872 6 1321 849 18 35 0 chr12 96470299 96470413 -24787117 + (TTTC)n Simple_repeat Simple_repeat 4 121 0 6 1321 436 0 0 48 chr12 96470416 96470478 -24787052 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 7 1321 4590 245 55 17 chr12 96470478 96470495 -24787035 - Lx5 LINE L1 -1179 5871 5850 6 1321 1851 207 11 51 chr12 96470495 96470944 -24786586 + Lx5 LINE L1 5435 5865 -12 6 1321 281 236 77 106 chr12 96473369 96473473 -24784057 - RMER12 LTR ERVK -2 1320 1220 7 1321 4999 167 78 10 chr12 96473574 96473657 -24783873 - RMER12 LTR ERVK -281 1041 906 7 1321 516 81 0 0 chr12 96473657 96473731 -24783799 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 1321 4999 167 78 10 chr12 96473731 96474619 -24782911 - RMER12 LTR ERVK -417 905 5 7 1321 698 360 22 11 chr12 96474678 96474948 -24782582 + B4 SINE B4 20 292 0 7 1321 203 88 29 0 chr12 96474984 96475018 -24782512 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1321 25 0 0 0 chr12 96475023 96475048 -24782482 + AT_rich Low_complexity Low_complexity 1 25 0 7 1321 393 22 0 0 chr12 96475877 96475923 -24781607 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1321 619 214 48 41 chr12 96476490 96476636 -24780894 - B1_Mm SINE Alu 0 147 1 7 1321 261 0 0 0 chr12 96479337 96479366 -24778164 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 1321 984 124 7 0 chr12 96479949 96480094 -24777436 + B1_Mus1 SINE Alu 3 148 0 7 1321 186 356 181 0 chr12 96480144 96480304 -24777226 - MIR SINE MIR -4 258 70 7 1321 480 314 69 44 chr12 96480861 96481021 -24776509 + RSINE1 SINE B4 2 165 0 7 1321 227 278 96 51 chr12 96481021 96481039 -24776491 + B2_Mm2 SINE B2 2 187 -8 7 1321 668 74 9 0 chr12 96481096 96481204 -24776326 + (TA)n Simple_repeat Simple_repeat 2 110 0 7 1321 318 26 0 0 chr12 96481872 96481911 -24775619 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 7 1321 294 170 0 0 chr12 96481912 96481965 -24775565 + RMER6A LTR ERVK 6 58 -403 7 1321 665 126 0 9 chr12 96481965 96482077 -24775453 + (GAAA)n Simple_repeat Simple_repeat 1 111 0 7 1321 751 190 0 78 chr12 96482078 96482232 -24775298 + RMER6A LTR ERVK 52 193 -563 7 1321 7276 83 22 4 chr12 96482250 96482870 -24774660 + Lx3_Mus LINE L1 4864 5500 -386 7 1321 513 0 0 0 chr12 96482870 96482927 -24774603 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1321 10015 87 19 5 chr12 96482927 96484412 -24773118 + Lx3_Mus LINE L1 5501 7002 -7 7 1321 2416 194 56 4 chr12 96484412 96484946 -24772584 + RMER6A LTR ERVK 195 756 0 7 1321 35612 53 1 4 chr12 96486577 96492671 -24764859 + L1Md_T LINE L1 1 5589 -297 7 1321 8487 29 0 2 chr12 96492671 96493701 -24763829 + L1Md_T LINE L1 5590 6585 0 7 1321 238 167 12 49 chr12 96494002 96494084 -24763446 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 1321 357 93 0 0 chr12 96494658 96494712 -24762818 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 1321 1041 159 0 2 chr12 96494714 96495130 -24762400 + (CA)n Simple_repeat Simple_repeat 1 415 0 7 1321 321 230 0 86 chr12 96495133 96495214 -24762316 + HAL1-3A_ME LINE L1 1976 2049 -809 7 1321 1394 161 118 14 chr12 96495874 96496163 -24761367 + RMER6D LTR ERVK 1 319 -401 7 1321 292 98 0 0 chr12 96496282 96496323 -24761207 + ORR1A3 LTR MaLR 134 174 -152 7 1321 22493 36 2 1 chr12 96496586 96500000 -24757530 - L1Md_T LINE L1 -1 6581 3165 7 1321 15906 41 4 14 chr12 96500000 96502757 -24754773 - L1Md_A LINE L1 -2719 3164 440 1 1321 247 200 53 13 chr12 96503147 96503223 -24754307 + ORR1A4 LTR MaLR 1 79 -250 2 1321 2517 185 76 28 chr12 96503236 96503838 -24753692 - RMER6C LTR ERVK -35 655 25 3 1321 207 0 0 0 chr12 96503892 96503915 -24753615 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1321 236 303 154 8 chr12 96504268 96504391 -24753139 + RMER15 LTR ERVL 376 516 -59 5 1321 21 0 0 0 chr12 96504706 96504727 -24752803 + AT_rich Low_complexity Low_complexity 1 21 0 6 1321 396 40 0 0 chr12 96504760 96504810 -24752720 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1321 781 293 27 5 chr12 96506785 96507008 -24750522 - B4A SINE B4 -64 228 1 8 1321 573 358 27 60 chr12 96508844 96509144 -24748386 + B4 SINE B4 2 291 -1 9 1321 414 305 228 44 chr12 96510891 96511207 -24746323 + MTEb LTR MaLR 3 376 -3 1 1321 21 36 0 0 chr12 96512566 96512594 -24744936 + AT_rich Low_complexity Low_complexity 1 28 0 1 1321 492 72 0 0 chr12 96512894 96512963 -24744567 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1321 590 65 46 0 chr12 96513422 96513530 -24744000 + L1Md_F3 LINE L1 6471 6583 -1 1 1321 252 320 0 0 chr12 96513530 96513608 -24743922 + GA-rich Low_complexity Low_complexity 1 78 0 1 1321 1055 127 0 6 chr12 96513611 96513785 -24743745 + (GGGGA)n Simple_repeat Simple_repeat 4 176 0 1 1321 459 0 0 0 chr12 96513787 96513838 -24743692 + (GAGAA)n Simple_repeat Simple_repeat 1 51 0 1 1321 5426 69 0 0 chr12 96513982 96514677 -24742853 - L1Md_T LINE L1 0 6582 5888 1 1321 12376 25 0 0 chr12 96514677 96516155 -24741375 + L1_Mm LINE L1 2511 3988 -1895 1 1321 244 336 30 0 chr12 96516525 96516656 -24740874 + CT-rich Low_complexity Low_complexity 6 140 0 1 1321 190 320 0 0 chr12 96516957 96517007 -24740523 - L2b LINE L2 -6 3369 3320 2 1321 631 74 0 36 chr12 96517415 96517527 -24740003 - L1Md_F2 LINE L1 -4 6578 6471 2 1321 489 110 0 0 chr12 96517651 96517724 -24739806 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 2 1321 543 66 0 0 chr12 96518147 96518223 -24739307 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1321 201 393 42 28 chr12 96518813 96519030 -24738500 + L4 LINE RTE 1491 1710 -319 2 1321 291 289 72 66 chr12 96519581 96519733 -24737797 + MLT1A1 LTR MaLR 249 401 -7 2 1321 2836 158 136 17 chr12 96519734 96519753 -24737777 - Lx LINE L1 -6 6648 6633 2 1321 1568 150 25 0 chr12 96519753 96520027 -24737503 - Lx LINE L1 0 6654 6374 2 1321 2836 158 136 17 chr12 96520027 96520595 -24736935 - Lx LINE L1 -22 6632 5991 2 1321 528 68 0 0 chr12 96520894 96520967 -24736563 + (TTTC)n Simple_repeat Simple_repeat 3 75 0 2 1321 31 26 0 0 chr12 96521130 96521168 -24736362 + AT_rich Low_complexity Low_complexity 1 38 0 2 1321 21 36 0 0 chr12 96521924 96521952 -24735578 + AT_rich Low_complexity Low_complexity 1 28 0 3 1321 227 196 0 0 chr12 96522232 96522283 -24735247 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1321 552 56 0 0 chr12 96525604 96525676 -24731854 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1321 468 0 0 0 chr12 96526185 96526237 -24731293 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1321 14569 13 0 0 chr12 96526313 96527978 -24729552 + L1Md_A LINE L1 3922 5586 -297 3 1321 8729 17 0 0 chr12 96527978 96528973 -24728557 + L1Md_A LINE L1 5587 6581 -1 3 1321 365 301 13 47 chr12 96529090 96529240 -24728290 - B1_Mur1 SINE Alu 0 149 5 3 1321 4043 213 19 29 chr12 96529488 96530318 -24727212 + RMER13A LTR ERVK 1 822 -38 3 1321 2770 197 1 136 chr12 96530349 96530747 -24726783 - RMER19C LTR ERVK -2 609 294 3 1321 482 0 17 0 chr12 96530747 96530805 -24726725 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1321 2770 197 1 136 chr12 96530805 96531110 -24726420 - RMER19C LTR ERVK -318 293 1 3 1321 672 169 35 52 chr12 96531145 96531376 -24726154 - MurERV4_19-int LTR ERVK -30 5750 5524 3 1321 319 280 80 90 chr12 96531417 96531629 -24725901 - RMER4A LTR ERVK -12 454 245 3 1321 4964 158 34 68 chr12 96531629 96532694 -24724836 - MurERV4_19-int LTR ERVK -440 5340 4312 3 1321 9661 143 28 29 chr12 96532689 96533087 -24724443 - MurERV4_19-int LTR ERVK -2180 3600 3172 3 1321 279 54 0 0 chr12 96533087 96533124 -24724406 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 4 1321 9661 143 28 29 chr12 96533124 96534465 -24723065 - MurERV4_19-int LTR ERVK -2609 3171 1862 3 1321 8850 194 20 9 chr12 96534463 96536145 -24721385 - MurERV4_19-int LTR ERVK -4081 1699 1 3 1321 2708 192 62 47 chr12 96536145 96536747 -24720783 - RMER19C LTR ERVK 0 611 1 3 1321 1073 248 169 22 chr12 96536879 96537435 -24720095 + Lx7 LINE L1 6780 7417 -279 4 1321 477 161 105 58 chr12 96537481 96537653 -24719877 + Lx7 LINE L1 7517 7696 0 4 1321 338 312 18 0 chr12 96539165 96539277 -24718253 + L1M5 LINE L1 5520 5633 -540 4 1321 978 292 46 72 chr12 96539879 96540422 -24717108 + L1MD2 LINE L1 5631 6159 -200 4 1321 25 31 0 0 chr12 96540936 96540968 -24716562 + AT_rich Low_complexity Low_complexity 1 32 0 4 1321 325 227 155 8 chr12 96541135 96541264 -24716266 - L1M5 LINE L1 -1512 4634 4487 4 1321 1121 287 67 14 chr12 96542493 96542853 -24714677 + MTE2a LTR MaLR 1 379 0 4 1321 355 274 58 97 chr12 96544158 96544364 -24713166 + B3A SINE B2 1 198 0 4 1321 324 47 0 0 chr12 96545151 96545194 -24712336 - L1Md_F2 LINE L1 -756 5826 5784 4 1321 5443 47 9 13 chr12 96545194 96545888 -24711642 + L1Md_F2 LINE L1 5892 6582 0 4 1321 482 300 144 43 chr12 96547624 96547931 -24709599 - MLT2B4 LTR ERVL -92 322 5 4 1321 1164 105 2 12 chr12 96547957 96548371 -24709159 + (CA)n Simple_repeat Simple_repeat 1 410 0 5 1321 714 313 26 71 chr12 96549284 96549552 -24707978 - MTE2b LTR MaLR -122 257 2 5 1321 280 325 65 19 chr12 96549714 96549868 -24707662 - LTR48B LTR ERV1 -350 294 134 5 1321 23 0 0 0 chr12 96550693 96550716 -24706814 + AT_rich Low_complexity Low_complexity 1 23 0 5 1321 942 268 59 17 chr12 96550803 96551092 -24706438 - Tigger1 DNA MER2_type -3 2415 2115 5 1321 1885 296 111 31 chr12 96551105 96551855 -24705675 - Lx6 LINE L1 -5 7455 6646 5 1321 1190 314 24 17 chr12 96551852 96552266 -24705264 - Lx6 LINE L1 -916 6544 6128 5 1321 290 342 27 0 chr12 96552363 96552474 -24705056 - PB1D7 SINE Alu -4 116 3 5 1321 719 315 103 24 chr12 96552479 96552905 -24704625 - Tigger1 DNA MER2_type -397 2021 1562 5 1321 195 333 60 40 chr12 96552983 96553083 -24704447 - MIRb SINE MIR -5 263 162 5 1321 520 268 73 0 chr12 96553111 96553234 -24704296 + B1_Mur3 SINE Alu 1 132 -17 5 1321 274 362 72 26 chr12 96553234 96553256 -24704274 + B4 SINE B4 113 235 -57 5 1321 332 302 10 0 chr12 96553531 96553627 -24703903 + MER34A LTR ERV1 5 101 -470 6 1321 560 247 45 85 chr12 96553929 96554106 -24703424 - MTE2b LTR MaLR -46 333 164 6 1321 614 307 34 0 chr12 96554124 96554303 -24703227 - MTE2b LTR MaLR -189 190 6 6 1321 738 361 29 23 chr12 96554533 96554842 -24702688 - ORR1E LTR MaLR -45 314 4 6 1321 374 320 79 28 chr12 96555150 96555327 -24702203 - MER5A DNA MER1_type 0 189 4 6 1321 234 156 0 0 chr12 96555438 96555483 -24702047 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1321 198 103 0 0 chr12 96555485 96555514 -24702016 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1321 2404 85 0 0 chr12 96555932 96556251 -24701279 - L1_Mus1 LINE L1 0 6567 6249 6 1321 476 350 11 53 chr12 96557415 96557699 -24699831 + B4A SINE B4 4 275 -17 6 1321 450 65 0 0 chr12 96557736 96557798 -24699732 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1321 329 289 29 0 chr12 96558715 96558819 -24698711 - MER5A DNA MER1_type -2 187 81 6 1321 288 0 0 0 chr12 96559021 96559053 -24698477 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1321 522 83 0 0 chr12 96559601 96559673 -24697857 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 7 1321 21 0 0 0 chr12 96559704 96559725 -24697805 + AT_rich Low_complexity Low_complexity 1 21 0 7 1321 24 0 0 0 chr12 96559780 96559804 -24697726 + AT_rich Low_complexity Low_complexity 1 24 0 7 1321 511 252 35 35 chr12 96561079 96561223 -24696307 - RMER1C Other Other 0 1342 1199 7 1321 929 190 13 10 chr12 96561232 96561521 -24696009 + GA-rich Low_complexity Low_complexity 1 289 0 7 1321 326 127 0 18 chr12 96561534 96561590 -24695940 - RMER1C Other Other -171 1171 1117 7 1321 230 270 0 108 chr12 96561676 96561759 -24695771 - Charlie6 DNA MER1_type -1015 2485 2412 7 1321 260 291 23 0 chr12 96561811 96561897 -24695633 - Lx7 LINE L1 -396 7300 7213 7 1321 37 0 0 0 chr12 96561897 96561934 -24695596 + AT_rich Low_complexity Low_complexity 1 37 0 7 1321 3419 249 29 93 chr12 96563475 96564562 -24692968 + RMER1B Other Other 46 1062 -4 8 1321 251 229 6 37 chr12 96565277 96565293 -24692237 + polypurine Low_complexity Low_complexity 3 18 0 8 1321 633 61 0 0 chr12 96565293 96565375 -24692155 + (GGGAGA)n Simple_repeat Simple_repeat 3 84 0 8 1321 251 229 6 37 chr12 96565375 96565521 -24692009 + GA-rich Low_complexity Low_complexity 19 159 0 8 1321 837 148 0 0 chr12 96565507 96565649 -24691881 + (GA)n Simple_repeat Simple_repeat 2 143 0 8 1321 803 78 9 0 chr12 96565660 96565776 -24691754 + (GGAA)n Simple_repeat Simple_repeat 1 117 0 8 1321 576 53 0 0 chr12 96565850 96565926 -24691604 + (TTTTC)n Simple_repeat Simple_repeat 4 79 0 8 1321 976 43 39 85 chr12 96566535 96566688 -24690842 + B1_Mm SINE Alu 2 147 0 8 1321 322 39 39 0 chr12 96566688 96566740 -24690790 + (CAAAAA)n Simple_repeat Simple_repeat 6 59 0 8 1321 23 33 0 0 chr12 96568389 96568419 -24689111 + AT_rich Low_complexity Low_complexity 1 30 0 8 1321 378 61 0 0 chr12 96568597 96568646 -24688884 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1321 416 275 0 27 chr12 96568739 96568885 -24688645 + Lx9 LINE L1 7344 7485 -159 9 1321 22 35 0 0 chr12 96568983 96569012 -24688518 + AT_rich Low_complexity Low_complexity 1 29 0 9 1321 251 225 110 27 chr12 96569270 96569343 -24688187 + MT2B2 LTR ERVL 174 252 -332 9 1321 286 224 0 29 chr12 96569279 96569348 -24688182 + RLTR25A LTR ERVK 510 576 -527 9 1321 743 59 0 0 chr12 96569291 96569393 -24688137 + B1_Mm SINE Alu 46 147 0 9 1321 25 31 0 0 chr12 96569523 96569555 -24687975 + AT_rich Low_complexity Low_complexity 1 32 0 9 1321 447 292 29 0 chr12 96569855 96569992 -24687538 + B1_Mur1 SINE Alu 2 142 -7 9 1321 1903 282 90 74 chr12 96570181 96571113 -24686417 + Lx5 LINE L1 6029 7013 -37 9 1321 297 260 0 0 chr12 96571542 96571646 -24685884 + T-rich Low_complexity Low_complexity 1 104 0 9 1321 1132 88 0 7 chr12 96572132 96572281 -24685249 + B1_Mus1 SINE Alu 1 148 0 1 1321 533 108 0 26 chr12 96572290 96572404 -24685126 + (A)n Simple_repeat Simple_repeat 1 111 0 1 1321 210 71 0 0 chr12 96572572 96572600 -24684930 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1321 233 342 25 25 chr12 96572757 96572838 -24684692 + ID4_ SINE ID 2 82 -1 1 1321 1710 79 15 52 chr12 96573658 96573925 -24683605 - L1_Mus2 LINE L1 0 6566 6310 1 1321 390 136 0 0 chr12 96573925 96573984 -24683546 + L1_Mus2 LINE L1 6259 6317 -250 1 1321 235 376 60 60 chr12 96576675 96576842 -24680688 - MLT1A0 LTR MaLR -198 167 1 1 1321 1939 120 229 0 chr12 96576912 96577278 -24680252 + RLTR44E LTR ERVK 3 452 0 1 1321 239 245 62 26 chr12 96577624 96577737 -24679793 - Lx8 LINE L1 -4 7469 7353 1 1321 35361 35 1 0 chr12 96578696 96584176 -24673354 + L1Md_T LINE L1 7 5589 -297 1 1321 8984 5 0 0 chr12 96584176 96585172 -24672358 + L1Md_T LINE L1 5590 6585 0 1 1321 244 296 59 59 chr12 96586091 96586260 -24671270 - MTEa LTR MaLR -7 372 204 1 1321 303 233 14 14 chr12 96587278 96587352 -24670178 + Lx9 LINE L1 7158 7231 -413 1 1321 365 100 33 16 chr12 96587464 96587525 -24670005 + Lx9 LINE L1 7411 7472 -172 1 1321 397 241 9 9 chr12 96587612 96587725 -24669805 + Lx9 LINE L1 7523 7635 -9 1 1321 363 314 30 66 chr12 96588314 96588481 -24669049 - RMER30 DNA MER1_type -4 198 38 1 1321 201 39 0 0 chr12 96588746 96588772 -24668758 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1321 228 262 16 0 chr12 96588776 96588837 -24668693 + L1_Mur3 LINE L1 56 117 -7611 1 1321 2597 254 16 92 chr12 96588840 96589612 -24667918 - RMER1C Other Other -3 1339 627 1 1321 576 323 99 5 chr12 96589617 96589838 -24667692 + RMER1C Other Other 485 726 -616 1 1321 700 284 90 5 chr12 96589838 96590061 -24667469 + L1_Mur3 LINE L1 107 348 -7380 1 1321 968 215 39 0 chr12 96590057 96590147 -24667383 + L1_Mur3 LINE L1 1329 1418 -4462 1 1321 180 0 0 0 chr12 96590147 96590167 -24667363 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1 1321 968 215 39 0 chr12 96590167 96590336 -24667194 + L1_Mur3 LINE L1 1419 1597 -4283 1 1321 7031 206 66 39 chr12 96590334 96592252 -24665278 + L1_Mur3 LINE L1 1839 3807 -2073 1 1321 1373 238 66 160 chr12 96592247 96592800 -24664730 + Lx7 LINE L1 7063 7520 -176 1 1321 186 43 0 0 chr12 96592800 96592823 -24664707 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 1 1321 1373 238 66 160 chr12 96592823 96592969 -24664561 + Lx7 LINE L1 7521 7696 0 1 1321 446 362 0 13 chr12 96594190 96594344 -24663186 + B3A SINE B2 42 193 -5 1 1321 2318 91 14 22 chr12 96594546 96594905 -24662625 - L1_Mus3 LINE L1 0 6638 6283 1 1321 1402 125 0 5 chr12 96594906 96595115 -24662415 + L1_Mus2 LINE L1 5406 5613 -270 1 1321 4879 126 118 11 chr12 96595119 96595975 -24661555 - RMER17B LTR ERVK -3 955 8 1 1321 2357 107 60 5 chr12 96595975 96596388 -24661142 + L1_Mus2 LINE L1 5606 5936 -630 1 1321 654 49 0 0 chr12 96596500 96596582 -24660948 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 1321 189 94 0 0 chr12 96596582 96596614 -24660916 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1321 220 189 0 39 chr12 96596614 96596691 -24660839 + (TTTAA)n Simple_repeat Simple_repeat 1 74 0 1 1321 323 282 145 21 chr12 96597066 96597211 -24660319 - MER57E1 LTR ERV1 -209 163 1 1 1321 21 36 0 0 chr12 96597256 96597284 -24660246 + AT_rich Low_complexity Low_complexity 1 28 0 1 1321 1100 70 7 0 chr12 96597299 96597441 -24660089 + B1_Mus2 SINE Alu 5 147 0 1 1321 576 42 0 0 chr12 96597441 96597512 -24660018 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 1321 246 68 23 0 chr12 96597524 96597568 -24659962 + B1_Mm SINE Alu 103 147 0 1 1321 306 273 23 0 chr12 96597937 96598040 -24659490 - Lx8 LINE L1 -677 6796 6716 1 1321 275 238 116 23 chr12 96598177 96598263 -24659267 + B4A SINE B4 3 96 -196 1 1321 423 0 0 0 chr12 96598335 96598382 -24659148 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1321 673 163 7 72 chr12 96598583 96598735 -24658795 - URR1B DNA MER1_type -1 224 83 1 1321 506 311 51 84 chr12 96599081 96599355 -24658175 + L3b LINE CR1 24 288 -194 1 165 247 361 8 16 chr12 96599978 96600099 -24657431 - MER34 LTR ERV1 -17 525 406 1 1322 333 0 0 0 chr12 96600313 96600350 -24657180 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1322 6784 65 25 2 chr12 96600406 96601279 -24656251 - L1_Mus1 LINE L1 0 6567 5675 1 1322 231 36 0 0 chr12 96601279 96601307 -24656223 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1322 527 325 106 29 chr12 96602168 96602545 -24654985 + MLT1A1 LTR MaLR 1 406 -2 1 1322 1006 129 25 54 chr12 96602974 96603178 -24654352 + Lx2B LINE L1 6556 6753 -247 1 1322 4056 186 70 51 chr12 96603356 96604246 -24653284 + RMER13B LTR ERVK 1 907 -1 1 1322 491 284 112 50 chr12 96604393 96604667 -24652863 + MTEa LTR MaLR 49 376 -3 1 1322 23 33 0 0 chr12 96604868 96604898 -24652632 + AT_rich Low_complexity Low_complexity 1 30 0 1 1322 633 151 0 0 chr12 96604931 96605083 -24652447 + CT-rich Low_complexity Low_complexity 1 152 0 1 1322 207 69 0 0 chr12 96605083 96605112 -24652418 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1322 379 336 8 0 chr12 96605113 96605238 -24652292 - RSINE1 SINE B4 -38 127 2 1 1322 350 271 0 12 chr12 96606735 96606746 -24650784 + MT2B LTR ERVL 155 164 -437 1 1322 556 116 91 0 chr12 96606746 96606841 -24650689 + B1_Mus2 SINE Alu 2 114 -6 1 1322 250 330 40 20 chr12 96607113 96607212 -24650318 + B3 SINE B2 17 117 -99 1 1322 494 31 0 15 chr12 96607235 96607300 -24650230 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1322 321 26 0 0 chr12 96607300 96607337 -24650193 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1322 1031 134 0 6 chr12 96607791 96607971 -24649559 + (TCCC)n Simple_repeat Simple_repeat 1 179 0 1 1322 198 0 0 0 chr12 96607971 96607993 -24649537 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 1 1322 23 0 0 0 chr12 96608421 96608444 -24649086 + AT_rich Low_complexity Low_complexity 1 23 0 1 1322 372 331 29 41 chr12 96608731 96608901 -24648629 - Lx8 LINE L1 -345 7128 6961 1 1322 1895 208 49 13 chr12 96608911 96609296 -24648234 + MTB_Mm LTR MaLR 1 399 -8 1 1322 1302 48 96 0 chr12 96609296 96609483 -24648047 + L1Md_F3 LINE L1 6380 6584 0 1 1322 342 0 0 0 chr12 96609491 96609529 -24648001 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1322 662 314 55 11 chr12 96609565 96609836 -24647694 - Lx8 LINE L1 -552 6921 6639 1 1322 3213 242 53 17 chr12 96609831 96610077 -24647453 + Lx5 LINE L1 6168 6427 -623 1 1322 3082 68 0 5 chr12 96610077 96610479 -24647051 + MTB LTR MaLR 1 400 0 1 1322 3213 248 56 20 chr12 96610479 96611066 -24646464 + Lx5 LINE L1 6428 7057 -1 1 1322 309 157 0 19 chr12 96612311 96612363 -24645167 + HAL1-3A_ME LINE L1 1976 2026 -832 1 1322 26 64 0 0 chr12 96612443 96612490 -24645040 + AT_rich Low_complexity Low_complexity 1 47 0 1 1322 477 0 0 0 chr12 96612986 96613039 -24644491 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1322 184 333 49 67 chr12 96613053 96613217 -24644313 + L2 LINE L2 2602 2762 -657 1 1322 4609 207 44 28 chr12 96613568 96614819 -24642711 + Lx5 LINE L1 4910 6178 -872 1 1322 3032 179 55 111 chr12 96614819 96615582 -24641948 + RMER6D LTR ERVK 1 720 0 1 1322 3662 263 69 96 chr12 96615582 96616465 -24641065 + Lx5 LINE L1 6179 7030 -20 1 1322 22 35 0 0 chr12 96616820 96616849 -24640681 + AT_rich Low_complexity Low_complexity 1 29 0 1 1322 855 84 0 0 chr12 96617054 96617161 -24640369 - U6 snRNA snRNA 0 107 1 1 1322 280 294 85 30 chr12 96617173 96617338 -24640192 + MER63C DNA AcHobo 450 623 -307 1 1322 216 349 24 0 chr12 96617445 96617528 -24640002 - MIRm SINE MIR 0 276 192 1 1322 186 43 0 0 chr12 96618243 96618266 -24639264 + (CAAG)n Simple_repeat Simple_repeat 1 23 0 1 1322 200 231 0 37 chr12 96618275 96618329 -24639201 + GA-rich Low_complexity Low_complexity 2 53 0 1 1322 285 154 138 0 chr12 96618595 96618660 -24638870 - 4.5SRNA scRNA scRNA 0 94 21 1 1322 838 226 20 31 chr12 96618687 96618883 -24638647 + Lx3B LINE L1 6779 6972 -1 1 1322 439 70 42 0 chr12 96618902 96618973 -24638557 + (CATA)n Simple_repeat Simple_repeat 2 75 0 1 1322 5811 196 63 58 chr12 96619548 96620838 -24636692 + RLTR21 LTR ERVK 1 1306 -266 1 1322 288 0 0 0 chr12 96620838 96620870 -24636660 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1322 5811 196 63 58 chr12 96620870 96621000 -24636530 + RLTR21 LTR ERVK 1307 1428 -144 1 1322 596 14 14 0 chr12 96621002 96621075 -24636455 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1322 394 178 6 89 chr12 96621077 96621256 -24636274 + RMER17C LTR ERVK 112 275 -135 1 1322 486 0 0 0 chr12 96622765 96622819 -24634711 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1322 663 142 0 0 chr12 96623850 96623998 -24633532 + (GA)n Simple_repeat Simple_repeat 2 149 0 1 1322 462 229 10 0 chr12 96624994 96625090 -24632440 + B4A SINE B4 184 280 -12 1 1322 288 77 0 0 chr12 96625092 96625131 -24632399 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1322 247 302 100 42 chr12 96625625 96625791 -24631739 - MIRb SINE MIR -90 178 5 1 1322 1189 214 32 159 chr12 96627153 96627586 -24629944 - ORR1C1 LTR MaLR 0 378 1 1 1322 186 43 0 0 chr12 96628447 96628470 -24629060 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1322 1115 88 0 0 chr12 96628493 96628641 -24628889 - B1_Mus1 SINE Alu 0 148 1 1 1322 204 67 0 0 chr12 96629200 96629230 -24628300 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 1 1322 310 405 6 31 chr12 96629593 96629756 -24627774 + RSINE1 SINE B4 5 163 -2 1 1322 21 82 0 0 chr12 96629756 96629805 -24627725 + AT_rich Low_complexity Low_complexity 1 49 0 1 1322 30 0 0 0 chr12 96630222 96630252 -24627278 + AT_rich Low_complexity Low_complexity 1 30 0 1 1322 252 122 0 0 chr12 96630534 96630575 -24626955 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1322 363 78 0 0 chr12 96634028 96634079 -24623451 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1322 327 243 95 54 chr12 96634196 96634344 -24623186 - RMER12 LTR ERVK -471 851 698 1 1322 246 105 0 0 chr12 96635803 96635841 -24621689 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 1 1322 591 155 0 0 chr12 96636196 96636299 -24621231 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 1322 243 88 0 0 chr12 96636306 96636340 -24621190 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1322 2155 76 0 65 chr12 96637364 96637689 -24619841 - L1_Mus2 LINE L1 0 6566 6263 2 1322 5673 112 64 110 chr12 96637714 96638846 -24618684 + L1_Mus3 LINE L1 5556 6638 0 2 1322 762 19 19 9 chr12 96638846 96638934 -24618596 + (GAA)n Simple_repeat Simple_repeat 1 90 0 2 1322 1221 106 0 0 chr12 96638934 96639114 -24618416 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1322 762 19 19 9 chr12 96639114 96639130 -24618400 + (GAA)n Simple_repeat Simple_repeat 1 16 0 2 1322 929 111 0 11 chr12 96640523 96640705 -24616825 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1322 232 391 41 56 chr12 96640740 96640935 -24616595 - L2c LINE L2 -78 3309 3118 2 1322 276 188 0 0 chr12 96640979 96641043 -24616487 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1322 1162 53 0 7 chr12 96641677 96641829 -24615701 + L1Md_F3 LINE L1 6420 6570 -14 2 1322 249 348 98 88 chr12 96642390 96642696 -24614834 - MLT1A0 LTR MaLR -4 361 53 2 1322 526 354 42 52 chr12 96644282 96644682 -24612848 + MLT1C LTR MaLR 10 405 -62 2 1322 600 111 0 0 chr12 96644697 96644787 -24612743 + (TATG)n Simple_repeat Simple_repeat 1 90 0 2 1322 222 357 10 10 chr12 96644833 96644932 -24612598 + MIR SINE MIR 45 143 -65 2 1322 294 325 24 57 chr12 96645335 96645459 -24612071 + ID_B1 SINE B4 18 137 -87 2 1322 519 17 0 0 chr12 96645462 96645522 -24612008 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1322 393 303 113 44 chr12 96645539 96645698 -24611832 - B4A SINE B4 -94 198 29 2 1322 24 32 0 0 chr12 96645725 96645756 -24611774 + AT_rich Low_complexity Low_complexity 1 31 0 2 1322 207 0 0 0 chr12 96647814 96647837 -24609693 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1322 195 159 36 24 chr12 96648908 96648992 -24608538 + (CAAA)n Simple_repeat Simple_repeat 2 86 0 2 1322 257 222 83 0 chr12 96649721 96649793 -24607737 + MTEb LTR MaLR 297 374 -5 2 1322 189 195 0 0 chr12 96650055 96650096 -24607434 + CT-rich Low_complexity Low_complexity 4 44 0 2 1322 493 330 34 38 chr12 96650106 96650170 -24607360 - Lx8 LINE L1 -50 7423 7355 2 1322 1197 271 59 117 chr12 96650170 96650710 -24606820 + RLTR18B LTR ERVK 1 509 -3 2 1322 260 102 0 20 chr12 96650715 96650765 -24606765 + (TTCA)n Simple_repeat Simple_repeat 2 50 0 2 1322 493 330 34 38 chr12 96650765 96650933 -24606597 - Lx8 LINE L1 -119 7354 7186 2 1322 24015 64 1 4 chr12 96651739 96653308 -24604222 + L1Md_F2 LINE L1 2462 4024 -1859 2 1322 3231 44 3 0 chr12 96653308 96653692 -24603838 - IAPEY_LTR LTR ERVK 0 385 1 2 1322 24015 64 1 4 chr12 96653692 96655257 -24602273 + L1Md_F2 LINE L1 4025 5585 -298 2 1322 7812 55 5 9 chr12 96655258 96656256 -24601274 + L1Md_F2 LINE L1 5587 6580 -2 2 1322 200 368 79 0 chr12 96656261 96656375 -24601155 - MIRb SINE MIR -112 156 34 2 1322 754 79 9 0 chr12 96656565 96656679 -24600851 - L1Md_F2 LINE L1 -13 6569 6455 2 1322 3169 102 19 0 chr12 96656759 96657221 -24600309 - Lx3_Mus LINE L1 0 7009 6539 2 1322 244 260 82 0 chr12 96657983 96658056 -24599474 - MLT1I LTR MaLR 0 374 296 2 1322 24 0 0 0 chr12 96658532 96658556 -24598974 + AT_rich Low_complexity Low_complexity 1 24 0 2 1322 666 84 0 0 chr12 96658933 96659040 -24598490 + (TC)n Simple_repeat Simple_repeat 2 108 0 2 1322 225 0 0 0 chr12 96659040 96659064 -24598466 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1322 335 308 83 15 chr12 96659240 96659372 -24598158 - MLT1I LTR MaLR -121 290 150 2 1322 4868 204 29 19 chr12 96660435 96661531 -24595999 + Lx2B LINE L1 5891 6997 -3 2 1322 210 37 0 0 chr12 96661667 96661694 -24595836 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 1322 273 209 96 57 chr12 96661702 96661859 -24595671 + RLTR40 LTR ERVK 569 731 -86 2 1322 1146 148 62 0 chr12 96662920 96663130 -24594400 - Lx2 LINE L1 0 6997 6775 2 1322 6635 133 26 6 chr12 96663130 96664214 -24593316 - Lx2 LINE L1 -354 6643 5538 2 1322 327 367 124 0 chr12 96664375 96664544 -24592986 - MLT1D LTR MaLR -32 473 284 2 1322 25 0 0 0 chr12 96666924 96666949 -24590581 + AT_rich Low_complexity Low_complexity 1 25 0 2 1322 5274 103 48 1 chr12 96667054 96667848 -24589682 - Lx3A LINE L1 0 6981 6151 2 1322 199 310 51 42 chr12 96668466 96668584 -24588946 - L2 LINE L2 -493 2926 2808 2 1322 303 28 0 0 chr12 96669940 96669976 -24587554 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 2 1322 1200 262 171 36 chr12 96669977 96670480 -24587050 - Lx4B LINE L1 -18 7040 6462 2 1322 708 175 28 7 chr12 96670588 96670732 -24586798 - Lx3C LINE L1 -2 6974 6828 2 1322 261 83 0 0 chr12 96671013 96671049 -24586481 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1322 25 51 0 0 chr12 96672493 96672532 -24584998 + AT_rich Low_complexity Low_complexity 1 39 0 2 1322 664 319 30 50 chr12 96672821 96672997 -24584533 + Lx8 LINE L1 6520 6702 -771 2 1322 258 56 0 0 chr12 96672997 96673033 -24584497 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 1322 664 319 30 50 chr12 96673033 96673159 -24584371 + Lx8 LINE L1 6703 6816 -657 2 1322 324 0 0 0 chr12 96673280 96673316 -24584214 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1322 264 383 0 8 chr12 96673666 96673787 -24583743 - MLT1A0 LTR MaLR -12 353 234 2 1322 809 314 27 27 chr12 96674293 96674594 -24582936 - MLT-int LTR MaLR -19 1716 1416 2 1322 5081 19 0 0 chr12 96674625 96675208 -24582322 + L1Md_A LINE L1 6000 6582 0 2 1322 29 90 0 0 chr12 96675209 96675287 -24582243 + AT_rich Low_complexity Low_complexity 1 78 0 2 1322 730 285 70 37 chr12 96675409 96675558 -24581972 - ID_B1 SINE B4 0 224 68 2 1322 2457 132 12 26 chr12 96675558 96675986 -24581544 + BGLII_Mus LTR ERVK 1 422 0 2 1322 730 285 70 37 chr12 96675986 96676051 -24581479 - ID SINE ID -157 67 3 2 1322 1175 74 0 0 chr12 96676779 96676927 -24580603 - B1_Mus1 SINE Alu 0 148 1 2 1322 27 49 0 0 chr12 96676997 96677038 -24580492 + AT_rich Low_complexity Low_complexity 1 41 0 2 1322 247 310 126 35 chr12 96677559 96677678 -24579852 + Lx8 LINE L1 7197 7325 -148 2 1322 627 14 0 0 chr12 96677678 96677750 -24579780 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1322 247 310 126 35 chr12 96677750 96677805 -24579725 + Lx8 LINE L1 7326 7391 -82 2 1322 1680 261 33 28 chr12 96677805 96678377 -24579153 - RMER15 LTR ERVL 0 575 1 2 1322 247 310 126 35 chr12 96678377 96678455 -24579075 + Lx8 LINE L1 7392 7472 -1 2 1322 1024 104 0 0 chr12 96678529 96678664 -24578866 - B1_Mm SINE Alu -12 135 1 2 1322 1191 294 58 21 chr12 96678758 96679193 -24578337 + Tigger1 DNA MER2_type 1260 1710 -708 2 1322 465 353 73 27 chr12 96679833 96680203 -24577327 + Tigger15a DNA TcMar 219 605 -110 2 1322 917 210 21 26 chr12 96680433 96680624 -24576906 + MTC LTR MaLR 5 194 -213 2 1322 4895 122 92 4 chr12 96680645 96681421 -24576109 + Lx3B LINE L1 6123 6966 -7 2 1322 219 36 0 0 chr12 96681428 96681456 -24576074 + (TAA)n Simple_repeat Simple_repeat 2 29 0 2 1322 1346 176 5 9 chr12 96681494 96681717 -24575813 + MTC LTR MaLR 200 421 0 2 1322 21 0 0 0 chr12 96682043 96682064 -24575466 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 25 0 0 0 chr12 96682083 96682108 -24575422 + AT_rich Low_complexity Low_complexity 1 25 0 2 1322 8902 5 1 0 chr12 96682120 96683111 -24574419 - L1Md_A LINE L1 0 6582 5591 2 1322 555 134 0 0 chr12 96683554 96683673 -24573857 + (GA)n Simple_repeat Simple_repeat 1 119 0 2 1322 189 0 0 0 chr12 96684244 96684265 -24573265 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2 1322 235 456 22 0 chr12 96684462 96684598 -24572932 - ORR1E LTR MaLR -220 139 1 2 1322 270 330 0 63 chr12 96685117 96685243 -24572287 + PB1D9 SINE Alu 1 118 -2 2 1322 2076 155 46 16 chr12 96685243 96685616 -24571914 + Lx3C LINE L1 6591 6974 -2 2 1322 689 163 17 11 chr12 96686734 96686908 -24570622 + GA-rich Low_complexity Low_complexity 6 180 0 2 1322 180 268 94 35 chr12 96687279 96687364 -24570166 + MIR SINE MIR 50 139 -69 2 1322 388 321 101 26 chr12 96687929 96688118 -24569412 - MLT1H LTR MaLR -318 231 29 2 1322 21 0 0 0 chr12 96688164 96688185 -24569345 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 2492 58 9 9 chr12 96688199 96688529 -24569001 + L1_Mus1 LINE L1 6237 6566 -1 2 1322 393 331 85 33 chr12 96688529 96688860 -24568670 - Charlie4a DNA MER1_type -81 427 80 2 1322 3821 52 0 10 chr12 96690133 96690617 -24566913 - L1Md_F2 LINE L1 0 6582 6104 2 1322 508 232 27 19 chr12 96690779 96691033 -24566497 + (TAGA)n Simple_repeat Simple_repeat 1 256 0 2 1322 306 0 0 0 chr12 96691532 96691566 -24565964 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1322 300 194 20 46 chr12 96691992 96692143 -24565387 + (CATATA)n Simple_repeat Simple_repeat 1 147 0 2 1322 643 333 48 15 chr12 96693330 96693601 -24563929 - B4 SINE B4 -10 282 3 2 1322 380 368 48 16 chr12 96693662 96693913 -24563617 + L1MD3 LINE L1 7728 7986 -9 2 1322 216 0 0 0 chr12 96694696 96694720 -24562810 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 2 1322 481 335 71 9 chr12 96696065 96696291 -24561239 - MER2 DNA MER2_type -12 333 94 2 1322 479 345 65 45 chr12 96697155 96697535 -24559995 + MLT1B LTR MaLR 1 374 -16 2 1322 617 92 0 10 chr12 96697664 96697763 -24559767 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 2 1322 1699 188 88 0 chr12 96698679 96699041 -24558489 + ORR1B1 LTR MaLR 1 394 0 2 1322 1566 169 16 87 chr12 96699552 96699875 -24557655 + ORR1B1 LTR MaLR 52 351 -43 2 1322 825 118 81 0 chr12 96699876 96700012 -24557518 + B1_Mus1 SINE Alu 1 147 -1 2 1322 188 61 0 57 chr12 96700012 96700047 -24557483 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 2 1322 389 91 0 0 chr12 96700047 96700102 -24557428 + ORR1A4 LTR MaLR 275 329 0 2 1322 255 215 0 0 chr12 96701524 96701589 -24555941 + CT-rich Low_complexity Low_complexity 4 68 0 2 1322 498 86 0 0 chr12 96701987 96702068 -24555462 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1322 315 96 0 0 chr12 96702068 96702120 -24555410 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1322 21 36 0 0 chr12 96702566 96702594 -24554936 + AT_rich Low_complexity Low_complexity 1 28 0 2 1322 26 50 0 0 chr12 96702739 96702779 -24554751 + AT_rich Low_complexity Low_complexity 1 40 0 2 1322 193 311 75 43 chr12 96702959 96703053 -24554477 - L2a LINE L2 -79 3347 3251 3 1322 180 290 146 27 chr12 96703116 96703226 -24554304 - L2a LINE L2 -277 3149 3027 3 1322 520 308 57 81 chr12 96703388 96703671 -24553859 - LTR37B LTR ERV1 0 468 151 3 1322 414 0 0 0 chr12 96705032 96705078 -24552452 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1322 638 114 19 0 chr12 96706693 96706798 -24550732 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 3 1322 2335 0 0 0 chr12 96707720 96707980 -24549550 - L1Md_T LINE L1 0 6582 6323 3 1322 1023 9 0 0 chr12 96708479 96708595 -24548935 + (TC)n Simple_repeat Simple_repeat 1 116 0 3 1322 333 0 0 0 chr12 96708595 96708631 -24548899 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1322 21 0 0 0 chr12 96710208 96710229 -24547301 + AT_rich Low_complexity Low_complexity 1 21 0 3 1322 366 277 77 54 chr12 96710923 96711091 -24546439 - ORR1E LTR MaLR -167 192 21 3 1322 220 243 52 104 chr12 96711178 96711293 -24546237 - L2 LINE L2 -979 2440 2332 3 1322 226 318 92 23 chr12 96711309 96711396 -24546134 - L2a LINE L2 -3 3423 3331 3 1322 231 323 58 29 chr12 96711457 96711594 -24545936 + MLT2D LTR ERVL 9 149 -265 3 1322 627 67 0 0 chr12 96711978 96712067 -24545463 + L1_Mus2 LINE L1 6478 6566 0 3 1322 702 343 12 8 chr12 96712121 96712365 -24545165 + B4 SINE B4 4 248 -44 3 1322 24 0 0 0 chr12 96712797 96712821 -24544709 + AT_rich Low_complexity Low_complexity 1 24 0 3 1322 249 350 139 0 chr12 96713780 96713960 -24543570 + MIR SINE MIR 53 257 -5 3 1322 593 277 102 0 chr12 96714033 96714210 -24543320 + MLT1D LTR MaLR 48 242 -263 3 1322 1569 219 59 25 chr12 96714637 96715044 -24542486 - MTC LTR MaLR 0 421 1 3 1322 421 189 252 19 chr12 96715181 96715391 -24542139 - Lx9 LINE L1 0 7644 7386 3 1322 23 0 0 0 chr12 96716414 96716437 -24541093 + AT_rich Low_complexity Low_complexity 1 23 0 3 1322 217 383 19 19 chr12 96716465 96716622 -24540908 - MIRb SINE MIR -110 158 2 3 1322 233 318 26 52 chr12 96717312 96717428 -24540102 - MLT1A1 LTR MaLR -294 114 2 3 1322 376 337 43 11 chr12 96717535 96717718 -24539812 + MIRc SINE MIR 1 182 -94 3 1322 27 49 0 0 chr12 96717755 96717796 -24539734 + AT_rich Low_complexity Low_complexity 1 41 0 3 1322 200 294 0 42 chr12 96719180 96719251 -24538279 - L2c LINE L2 -4 3383 3316 3 1322 360 111 0 0 chr12 96719857 96719911 -24537619 + (A)n Simple_repeat Simple_repeat 1 54 0 3 1322 1286 271 103 16 chr12 96722008 96722375 -24535155 - Lx5 LINE L1 0 7050 6652 3 1322 2686 235 17 30 chr12 96722527 96723172 -24534358 + Lx5 LINE L1 6088 6724 -326 3 1322 234 253 147 0 chr12 96723179 96723274 -24534256 + Lx5 LINE L1 6926 7034 -16 3 1322 314 45 0 0 chr12 96723275 96723319 -24534211 - L1_Mus2 LINE L1 -429 6137 6094 3 1322 2958 94 5 12 chr12 96723320 96723741 -24533789 + L1_Mus2 LINE L1 6149 6566 0 3 1322 21 0 0 0 chr12 96723770 96723791 -24533739 + AT_rich Low_complexity Low_complexity 1 21 0 3 1322 302 335 78 73 chr12 96725280 96725344 -24532186 - MER20 DNA MER1_type 0 219 155 3 1322 6642 37 0 12 chr12 96725344 96726164 -24531366 - L1Md_F3 LINE L1 0 6584 5775 3 1322 302 335 78 73 chr12 96726164 96726305 -24531225 - MER20 DNA MER1_type -65 154 13 3 1322 22 0 0 0 chr12 96727886 96727908 -24529622 + AT_rich Low_complexity Low_complexity 1 22 0 3 1322 844 299 143 13 chr12 96728035 96728343 -24529187 - ORR1E LTR MaLR -11 348 1 3 1322 362 340 115 8 chr12 96728884 96729127 -24528403 + Tigger7 DNA MER2_type 2 270 -2221 3 1322 267 262 0 0 chr12 96729181 96729242 -24528288 + Tigger7 DNA MER2_type 977 1037 -1454 3 1322 940 307 93 9 chr12 96729334 96729656 -24527874 - MTD LTR MaLR -15 404 56 3 1322 2771 86 8 3 chr12 96730326 96730719 -24526811 + MTB LTR MaLR 1 386 -14 3 165 1213 203 122 8 chr12 96731011 96731274 -24526256 + ORR1C1 LTR MaLR 86 378 0 3 1323 425 335 13 32 chr12 96731845 96732002 -24525528 - ID_B1 SINE B4 -1 223 70 3 1323 25 31 0 0 chr12 96732514 96732546 -24524984 + AT_rich Low_complexity Low_complexity 1 32 0 3 1323 216 0 0 0 chr12 96734733 96734757 -24522773 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1323 588 126 0 0 chr12 96734757 96734876 -24522654 + (GA)n Simple_repeat Simple_repeat 2 120 0 3 1323 206 41 19 93 chr12 96735358 96735412 -24522118 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 3 1323 1534 252 47 6 chr12 96736425 96736784 -24520746 - ORR1D1 LTR MaLR 0 374 1 3 1323 213 326 134 36 chr12 96737194 96737388 -24520142 + L3 LINE CR1 4150 4362 -127 3 1323 748 310 38 52 chr12 96737458 96737747 -24519783 + MTE2a LTR MaLR 63 347 -32 3 1323 729 207 9 20 chr12 96737762 96737940 -24519590 - B2_Mm2 SINE B2 -14 179 2 3 1323 263 102 42 28 chr12 96738409 96738480 -24519050 + T-rich Low_complexity Low_complexity 2 73 0 3 1323 333 0 0 0 chr12 96738564 96738601 -24518929 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1323 417 341 85 17 chr12 96739453 96739488 -24518042 - B3A SINE B2 -9 189 155 3 1323 240 111 0 0 chr12 96739488 96739524 -24518006 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1323 417 341 85 17 chr12 96739524 96739664 -24517866 - B3A SINE B2 -44 154 2 3 1323 310 369 95 71 chr12 96739805 96740088 -24517442 + B4 SINE B4 3 292 0 3 1323 453 36 0 0 chr12 96740139 96740194 -24517336 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1323 186 209 0 0 chr12 96740349 96740392 -24517138 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 3 1323 279 51 0 0 chr12 96740447 96740456 -24517074 + (TG)n Simple_repeat Simple_repeat 1 9 0 3 1323 507 56 0 0 chr12 96740456 96740527 -24517003 + (TCTCTG)n Simple_repeat Simple_repeat 6 76 0 3 1323 279 51 0 0 chr12 96740527 96740556 -24516974 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1323 684 302 6 6 chr12 96740556 96740736 -24516794 - B3A SINE B2 -16 182 3 3 1323 420 305 20 66 chr12 96740787 96740938 -24516592 - RSINE1 SINE B4 0 165 22 3 1323 25 0 0 0 chr12 96741008 96741033 -24516497 + AT_rich Low_complexity Low_complexity 1 25 0 3 1323 981 276 92 24 chr12 96741162 96741455 -24516075 + ORR1E LTR MaLR 1 313 -46 3 1323 288 270 98 9 chr12 96742900 96743012 -24514518 + MLT1F LTR MaLR 3 124 -424 3 1323 318 314 82 8 chr12 96743924 96744046 -24513484 + MER5B DNA MER1_type 4 134 -44 3 1323 723 126 0 0 chr12 96744061 96744180 -24513350 + Lx2 LINE L1 6879 6997 0 3 1323 430 377 84 52 chr12 96744315 96744754 -24512776 + MER21B LTR ERV1 100 552 -311 3 1323 22 0 0 0 chr12 96744977 96744999 -24512531 + AT_rich Low_complexity Low_complexity 1 22 0 3 1323 4371 127 9 19 chr12 96745005 96745698 -24511832 - Lx3B LINE L1 -1 6972 6287 3 1323 1355 264 101 43 chr12 96745714 96746884 -24510646 + Lx9 LINE L1 5485 6847 -797 3 1323 182 326 0 0 chr12 96747248 96747294 -24510236 + MIR SINE MIR 192 237 -25 3 1323 551 358 115 29 chr12 96748157 96748772 -24508758 - MER21B LTR ERV1 -119 744 48 3 1323 577 86 21 0 chr12 96749964 96750057 -24507473 + (CA)n Simple_repeat Simple_repeat 2 96 0 3 1323 361 329 90 39 chr12 96750589 96750744 -24506786 + B4A SINE B4 10 172 -120 3 1323 560 14 14 0 chr12 96750821 96750890 -24506640 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1323 369 0 0 0 chr12 96750890 96750930 -24506600 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1323 270 0 0 0 chr12 96750930 96750960 -24506570 + (CCA)n Simple_repeat Simple_repeat 3 32 0 3 1323 698 340 105 16 chr12 96751204 96751518 -24506012 - MTE2b LTR MaLR -13 366 25 3 1323 187 359 132 14 chr12 96751718 96751862 -24505668 - MIRb SINE MIR -57 211 51 3 1323 240 280 23 14 chr12 96752987 96753076 -24504454 + MTE2a LTR MaLR 9 101 -278 3 1323 1026 303 57 7 chr12 96753081 96753380 -24504150 + MTE2a LTR MaLR 66 379 0 3 1323 355 237 143 36 chr12 96753547 96753687 -24503843 - HAL1-3A_ME LINE L1 -729 2129 1975 3 1323 2965 90 0 5 chr12 96753726 96754129 -24503401 - L1_Mus3 LINE L1 -272 6366 5966 3 1323 1583 113 15 26 chr12 96754129 96754402 -24503128 + L1_Mus3 LINE L1 6368 6637 -1 3 1323 257 20 80 0 chr12 96755848 96755898 -24501632 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 3 1323 216 182 0 0 chr12 96756559 96756603 -24500927 + A-rich Low_complexity Low_complexity 1 44 0 3 1323 1109 263 7 30 chr12 96756983 96757285 -24500245 - Lx6 LINE L1 -12 7448 7154 3 1323 660 227 84 56 chr12 96757343 96757558 -24499972 + Lx6 LINE L1 6912 7132 -328 3 1323 794 284 39 0 chr12 96758644 96758848 -24498682 - Lx8 LINE L1 -469 7004 6793 3 1323 2131 142 14 0 chr12 96758888 96759241 -24498289 + Lx2 LINE L1 6634 6991 -6 3 1323 878 309 70 8 chr12 96759265 96759634 -24497896 - Lx8 LINE L1 -969 6504 6113 3 1323 204 40 0 0 chr12 96760211 96760236 -24497294 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1323 23 0 0 0 chr12 96760691 96760714 -24496816 + AT_rich Low_complexity Low_complexity 1 23 0 3 1323 235 340 9 9 chr12 96761167 96761274 -24496256 + GA-rich Low_complexity Low_complexity 1 107 0 3 1323 238 228 0 17 chr12 96761267 96761325 -24496205 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 3 1323 270 0 0 0 chr12 96761421 96761451 -24496079 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1323 5241 195 39 12 chr12 96762070 96763198 -24494332 + Lx2B LINE L1 5830 6987 -13 3 1323 700 299 51 36 chr12 96765745 96765998 -24491532 + B4 SINE B4 19 275 -17 3 1323 235 314 0 0 chr12 96766041 96766111 -24491419 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1323 961 290 114 20 chr12 96766681 96767014 -24490516 + ORR1D2 LTR MaLR 21 370 0 3 1323 212 235 28 56 chr12 96767818 96767926 -24489604 + T-rich Low_complexity Low_complexity 1 105 0 3 1323 527 363 114 40 chr12 96769112 96769586 -24487944 + MLT2B3 LTR ERVL 1 509 -45 3 1323 990 108 6 18 chr12 96770427 96770597 -24486933 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 3 1323 368 255 43 3 chr12 96771391 96771522 -24486008 - B1F SINE Alu -2 147 10 3 1323 1048 116 0 0 chr12 96771775 96771922 -24485608 + B1_Mus2 SINE Alu 1 147 0 3 1323 513 44 0 0 chr12 96771931 96771999 -24485531 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 4 1323 236 121 0 108 chr12 96771999 96772075 -24485455 + A-rich Low_complexity Low_complexity 10 76 0 4 1323 218 32 32 0 chr12 96772075 96772106 -24485424 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1323 236 121 0 108 chr12 96772106 96772122 -24485408 + A-rich Low_complexity Low_complexity 77 92 0 4 1323 192 97 0 0 chr12 96772167 96772198 -24485332 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 1323 185 286 142 61 chr12 96772688 96772885 -24484645 + MIRm SINE MIR 3 215 -61 4 1323 651 274 73 5 chr12 96772951 96773156 -24484374 - ID_B1 SINE B4 0 224 6 4 1323 23 0 0 0 chr12 96773341 96773364 -24484166 + AT_rich Low_complexity Low_complexity 1 23 0 4 1323 21 36 0 0 chr12 96773573 96773601 -24483929 + AT_rich Low_complexity Low_complexity 1 28 0 4 1323 201 167 32 48 chr12 96773731 96773794 -24483736 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 4 1323 537 328 21 16 chr12 96773800 96773989 -24483541 - B3A SINE B2 -1 197 8 4 1323 773 362 6 56 chr12 96774184 96774521 -24483009 - MTEb LTR MaLR -23 356 37 4 1323 453 66 0 0 chr12 96775244 96775305 -24482225 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1323 21 0 0 0 chr12 96776305 96776326 -24481204 + AT_rich Low_complexity Low_complexity 1 21 0 4 1323 23 0 0 0 chr12 96776349 96776372 -24481158 + AT_rich Low_complexity Low_complexity 1 23 0 4 1323 270 0 0 0 chr12 96776637 96776667 -24480863 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1323 238 62 20 40 chr12 96776883 96776933 -24480597 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 4 1323 456 200 0 0 chr12 96777165 96777285 -24480245 + GA-rich Low_complexity Low_complexity 2 121 0 4 1323 326 338 73 20 chr12 96777305 96777456 -24480074 + HAL1-3A_ME LINE L1 2284 2442 -416 4 1323 4851 70 0 9 chr12 96777723 96778370 -24479160 + L1Md_F2 LINE L1 5941 6581 -1 4 1323 267 341 87 0 chr12 96778689 96778815 -24478715 + MER3 DNA MER1_type 1 137 -72 4 1323 180 0 0 0 chr12 96779521 96779541 -24477989 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1323 384 363 19 19 chr12 96779691 96779899 -24477631 - MIR SINE MIR -54 208 1 4 1323 1002 39 0 30 chr12 96780373 96780506 -24477024 + B1_Mus2 SINE Alu 19 147 0 4 1323 189 163 0 0 chr12 96780509 96780558 -24476972 + A-rich Low_complexity Low_complexity 1 49 0 4 1323 22 0 0 0 chr12 96781714 96781736 -24475794 + AT_rich Low_complexity Low_complexity 1 22 0 4 1323 450 0 0 0 chr12 96782112 96782162 -24475368 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1323 465 19 0 0 chr12 96782163 96782217 -24475313 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1323 4663 45 2 10 chr12 96782548 96783129 -24474401 + L1Md_F2 LINE L1 5994 6569 -13 4 1323 25 0 0 0 chr12 96783129 96783154 -24474376 + AT_rich Low_complexity Low_complexity 1 25 0 4 1323 396 0 0 0 chr12 96783396 96783440 -24474090 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1323 270 0 0 0 chr12 96783440 96783469 -24474061 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1323 263 122 20 0 chr12 96783488 96783537 -24473993 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1323 2846 75 23 15 chr12 96783560 96783955 -24473575 + MTB LTR MaLR 3 400 0 4 1323 204 308 18 45 chr12 96784867 96784979 -24472551 + GA-rich Low_complexity Low_complexity 1 109 0 4 1323 271 340 70 65 chr12 96784984 96785185 -24472345 - MIRb SINE MIR -38 230 29 4 1323 700 11 11 11 chr12 96788284 96788374 -24469156 + (GA)n Simple_repeat Simple_repeat 2 91 0 4 1323 260 78 30 45 chr12 96788465 96788532 -24468998 + T-rich Low_complexity Low_complexity 2 67 0 4 1323 23 33 0 0 chr12 96790161 96790191 -24467339 + AT_rich Low_complexity Low_complexity 1 30 0 4 1323 508 331 28 28 chr12 96790459 96790745 -24466785 - B4A SINE B4 -4 288 3 4 1323 333 0 0 0 chr12 96791793 96791830 -24465700 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 4 1323 990 116 0 52 chr12 96791839 96791993 -24465537 - B1_Mus2 SINE Alu -1 146 1 4 1323 567 285 44 0 chr12 96792013 96792150 -24465380 - B1_Mur1 SINE Alu 0 149 7 4 1323 252 0 0 0 chr12 96792589 96792617 -24464913 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1323 22 35 0 0 chr12 96792843 96792872 -24464658 + AT_rich Low_complexity Low_complexity 1 29 0 4 1323 246 289 13 13 chr12 96792958 96793035 -24464495 + PB1D10 SINE Alu 18 94 -23 4 1323 536 206 0 16 chr12 96793254 96793382 -24464148 + Lx4A LINE L1 6868 6993 -65 4 1323 516 270 29 0 chr12 96793447 96793584 -24463946 + B1_Mur3 SINE Alu 1 141 -8 4 1323 215 279 0 0 chr12 96793601 96793680 -24463850 + A-rich Low_complexity Low_complexity 1 79 0 4 1323 216 86 0 0 chr12 96793864 96793899 -24463631 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 4 1323 1729 219 19 5 chr12 96794550 96794922 -24462608 + Lx6 LINE L1 7079 7455 -5 4 1323 229 26 0 50 chr12 96795551 96795591 -24461939 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4 1323 633 119 41 33 chr12 96795591 96795713 -24461817 - B1_Mus1 SINE Alu -12 136 14 4 1323 403 126 165 0 chr12 96795971 96796074 -24461456 + Lx9 LINE L1 7523 7642 -2 4 1323 548 87 0 11 chr12 96796515 96796524 -24461006 + (GA)n Simple_repeat Simple_repeat 2 10 0 4 1323 438 20 0 0 chr12 96796524 96796575 -24460955 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1323 548 87 0 11 chr12 96796575 96796658 -24460872 + (GA)n Simple_repeat Simple_repeat 1 83 0 4 1323 271 321 108 14 chr12 96796842 96796981 -24460549 - MIRc SINE MIR -114 154 3 4 1323 203 333 71 77 chr12 96798956 96799320 -24458210 - L2a LINE L2 -81 3345 2984 4 1323 293 367 26 48 chr12 96799587 96799776 -24457754 - L2a LINE L2 -736 2683 2499 4 1323 604 365 34 26 chr12 96801169 96801436 -24456094 + B4A SINE B4 2 270 -22 4 1323 408 40 0 0 chr12 96801438 96801488 -24456042 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1323 588 126 0 0 chr12 96801490 96801609 -24455921 + (GA)n Simple_repeat Simple_repeat 1 119 0 4 1323 477 390 43 86 chr12 96803087 96803390 -24454140 + B4 SINE B4 1 290 -2 4 1323 1047 281 68 12 chr12 96803573 96803894 -24453636 + MTD LTR MaLR 81 419 0 4 1323 294 253 33 11 chr12 96804933 96805025 -24452505 + MTE2a LTR MaLR 286 379 0 4 1323 1942 121 16 35 chr12 96805479 96805847 -24451683 - L1_Mur2 LINE L1 -2179 3698 3338 4 1323 2283 157 51 12 chr12 96805845 96806335 -24451195 + L1_Mur2 LINE L1 3687 4195 -1682 4 1323 1750 176 5 38 chr12 96806340 96806711 -24450819 + L1_Mur2 LINE L1 4545 4903 -974 4 1323 3841 204 18 9 chr12 96806712 96807555 -24449975 + Lx5 LINE L1 5739 6588 -462 4 1323 459 270 186 38 chr12 96807551 96807814 -24449716 + Lx5 LINE L1 6713 7050 -8 4 1323 27 0 0 0 chr12 96808056 96808083 -24449447 + AT_rich Low_complexity Low_complexity 1 27 0 4 1323 198 143 0 0 chr12 96808822 96808857 -24448673 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1323 427 339 106 32 chr12 96809340 96809623 -24447907 + LTR16C LTR ERVL 186 489 0 4 1323 1282 168 18 14 chr12 96811715 96811938 -24445592 + URR1B DNA MER1_type 2 225 0 4 1323 499 152 0 67 chr12 96812989 96813109 -24444421 - Lx3A LINE L1 -3 6978 6867 4 1323 330 239 0 0 chr12 96813123 96813190 -24444340 - Lx9 LINE L1 -950 6694 6628 4 1323 279 0 0 0 chr12 96813875 96813906 -24443624 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1323 861 291 29 4 chr12 96814373 96814652 -24442878 + RMER1B Other Other 65 350 -716 4 1323 2534 222 39 113 chr12 96814683 96815502 -24442028 + RMER1B Other Other 162 898 -168 4 1323 183 100 0 0 chr12 96815502 96815532 -24441998 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 1323 2534 222 39 113 chr12 96815532 96815685 -24441845 + RMER1B Other Other 899 1061 -5 4 1323 197 211 77 0 chr12 96815941 96815993 -24441537 - L2 LINE L2 -496 2923 2868 4 1323 600 330 27 16 chr12 96816071 96816256 -24441274 + B4 SINE B4 93 279 -13 4 1323 462 36 0 0 chr12 96816267 96816323 -24441207 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1323 765 161 12 12 chr12 96816328 96816492 -24441038 + GA-rich Low_complexity Low_complexity 3 166 0 4 1323 395 272 10 0 chr12 96816640 96816743 -24440787 + PB1D10 SINE Alu 4 107 -10 4 1323 481 364 43 12 chr12 96816837 96817093 -24440437 - RMER15 LTR ERVL -9 566 303 4 1323 311 325 0 0 chr12 96817528 96817605 -24439925 - B4A SINE B4 0 292 216 4 1323 36264 30 1 0 chr12 96817605 96824247 -24433283 - L1Md_T LINE L1 -6 6579 1 4 1323 760 253 5 38 chr12 96825006 96825191 -24432339 - B3A SINE B2 0 198 20 4 1323 588 45 11 22 chr12 96825382 96825472 -24432058 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 4 1323 5276 124 39 6 chr12 96825517 96826329 -24431201 - Lx2A1 LINE L1 -6 7002 6164 4 1323 458 291 35 0 chr12 96826348 96826489 -24431041 - B1_Mur2 SINE Alu -3 146 1 4 1323 500 45 0 15 chr12 96827073 96827141 -24430389 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1323 313 323 92 35 chr12 96827762 96827935 -24429595 - LTR50 LTR ERVL -605 190 8 4 1323 665 347 77 52 chr12 96829477 96829914 -24427616 + MLT-int LTR MaLR 15 536 -835 4 1323 492 385 37 72 chr12 96829945 96830401 -24427129 + MLT-int LTR MaLR 600 1039 -696 4 1323 954 348 56 14 chr12 96830439 96830885 -24426645 + MLT-int LTR MaLR 1226 1690 -45 4 1323 3840 155 15 6 chr12 96830888 96831621 -24425909 - L1_Mur2 LINE L1 -1609 4268 3529 4 1323 1164 220 103 8 chr12 96831623 96831981 -24425549 + Lx2B LINE L1 6608 6999 -1 4 1323 4074 39 12 2 chr12 96832068 96832556 -24424974 - MT2_Mm LTR ERVL 0 493 1 4 1323 350 154 82 55 chr12 96832568 96832678 -24424852 + Lx3A LINE L1 6041 6153 -828 4 1323 845 60 8 0 chr12 96832675 96832792 -24424738 - L1_Mus2 LINE L1 -756 5882 5765 4 1323 4760 95 1 39 chr12 96832792 96833502 -24424028 + L1_Mus2 LINE L1 5884 6566 0 4 1323 5455 115 12 28 chr12 96833513 96834371 -24423159 + Lx3A LINE L1 6134 6977 -4 4 1323 474 101 0 0 chr12 96834372 96834441 -24423089 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 4 1323 21 36 0 0 chr12 96834447 96834475 -24423055 + AT_rich Low_complexity Low_complexity 1 28 0 4 1323 570 296 20 49 chr12 96834576 96834913 -24422617 + MT2A LTR ERVL 109 465 -68 4 1323 528 94 31 10 chr12 96834917 96835014 -24422516 + (TTTC)n Simple_repeat Simple_repeat 1 99 0 5 1323 588 14 0 0 chr12 96835019 96835088 -24422442 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 1323 2250 259 39 28 chr12 96835113 96835685 -24421845 + RLTR20A2 LTR ERVK 1 578 0 5 1323 231 179 64 0 chr12 96835685 96835745 -24421785 + MT2A LTR ERVL 469 533 0 4 1323 203 157 0 19 chr12 96835857 96835909 -24421621 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1323 881 297 99 9 chr12 96836872 96837215 -24420315 - MTEa LTR MaLR -4 375 2 5 1323 1700 18 9 35 chr12 96839354 96839581 -24417949 - L1Md_F3 LINE L1 -1 6583 6363 5 1323 279 375 81 23 chr12 96839811 96840032 -24417498 + MLT1B LTR MaLR 157 390 0 5 1323 197 376 119 18 chr12 96841012 96841180 -24416350 + MIRb SINE MIR 76 260 -8 5 1323 6499 78 3 0 chr12 96841186 96842032 -24415498 + L1_Mus1 LINE L1 5714 6562 -5 5 1323 190 37 0 0 chr12 96842128 96842155 -24415375 - L2c LINE L2 0 3387 3361 5 1323 261 0 0 0 chr12 96842592 96842621 -24414909 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1323 387 0 0 0 chr12 96842621 96842663 -24414867 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1323 206 151 38 0 chr12 96842671 96842724 -24414806 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 5 1323 477 0 0 0 chr12 96842730 96842783 -24414747 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 5 1323 252 0 0 0 chr12 96843615 96843643 -24413887 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1323 1166 298 56 23 chr12 96845186 96845702 -24411828 + MT2A LTR ERVL 1 533 0 5 1323 283 283 0 89 chr12 96846658 96846782 -24410748 - Lx8 LINE L1 -1 7472 7360 5 1323 441 0 0 0 chr12 96846799 96846848 -24410682 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1323 1146 311 36 3 chr12 96847596 96847928 -24409602 + MTE2b LTR MaLR 35 377 -2 5 1323 333 323 109 31 chr12 96848024 96848216 -24409314 - B4A SINE B4 -59 233 27 5 1323 324 311 171 8 chr12 96848845 96848968 -24408562 + B4A SINE B4 150 292 0 5 1323 630 233 38 0 chr12 96849000 96849133 -24408397 + B1_Mur2 SINE Alu 4 141 -8 5 1323 441 0 0 0 chr12 96849133 96849182 -24408348 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1323 40899 13 1 6 chr12 96849619 96856420 -24401110 - L1Md_A LINE L1 -1 6581 1 5 1323 236 30 0 29 chr12 96857530 96857564 -24399966 + (CATTT)n Simple_repeat Simple_repeat 3 35 0 5 1323 2485 205 56 44 chr12 96857937 96858022 -24399508 + Lx2B LINE L1 5216 5287 -593 5 1323 988 0 0 0 chr12 96858027 96858134 -24399396 + U6 snRNA snRNA 1 107 0 5 1323 2982 39 3 0 chr12 96858134 96858492 -24399038 + L1Md_T LINE L1 6220 6578 -4 5 1323 5189 204 69 6 chr12 96858492 96860091 -24397439 + Lx2B LINE L1 5283 6856 -144 5 1323 4081 131 21 14 chr12 96860263 96860915 -24396615 - Lx LINE L1 -16 6638 5982 5 1323 353 279 31 19 chr12 96861131 96861292 -24396238 + L1ME1 LINE L1 5999 6161 -18 5 1323 299 167 0 15 chr12 96861442 96861509 -24396021 + CT-rich Low_complexity Low_complexity 3 68 0 5 1324 51 42 0 0 chr12 96863847 96863919 -24393611 + AT_rich Low_complexity Low_complexity 1 72 0 5 1324 369 0 0 0 chr12 96865875 96865916 -24391614 + (CCAA)n Simple_repeat Simple_repeat 2 42 0 5 1324 2111 173 18 3 chr12 96867322 96867705 -24389825 + Lx3B LINE L1 6584 6972 -1 5 1324 1747 28 5 0 chr12 96868687 96868903 -24388627 + L1Md_F2 LINE L1 6365 6581 -1 5 1324 225 288 0 17 chr12 96868911 96868970 -24388560 + B1F SINE Alu 11 68 -81 5 1324 3210 198 42 19 chr12 96868995 96869670 -24387860 - Lx4B LINE L1 -37 7021 6332 5 1324 12390 69 8 5 chr12 96870541 96872875 -24384655 - L1Md_F2 LINE L1 -12 6570 4231 5 1324 4402 62 2 0 chr12 96872868 96873445 -24384085 + L1Md_F2 LINE L1 3685 4262 -1621 5 1324 245 325 12 24 chr12 96873561 96873628 -24383902 + polypyrimidine Low_complexity Low_complexity 101 168 0 5 1324 1823 194 180 19 chr12 96873628 96874222 -24383308 - RMER6C LTR ERVK 0 690 1 5 1324 245 325 12 24 chr12 96874222 96874321 -24383209 + CT-rich Low_complexity Low_complexity 5 100 0 5 1324 228 200 20 0 chr12 96874333 96874383 -24383147 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1324 272 256 21 43 chr12 96875710 96875804 -24381726 + L1MA8 LINE L1 5944 6035 -256 5 1324 450 0 0 0 chr12 96875867 96875917 -24381613 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1324 3555 82 6 0 chr12 96876473 96876947 -24380583 - L1_Mus1 LINE L1 -1 6566 6090 5 1324 21 0 0 0 chr12 96877064 96877085 -24380445 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 254 324 65 28 chr12 96877322 96877430 -24380100 - ORR1E LTR MaLR -2 357 246 5 1324 423 0 0 0 chr12 96878763 96878810 -24378720 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1324 267 31 0 0 chr12 96878810 96878841 -24378689 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1324 645 269 162 4 chr12 96878867 96879102 -24378428 - B4A SINE B4 -16 276 5 5 1324 684 239 0 0 chr12 96879301 96879435 -24378095 - B1_Mus2 SINE Alu -9 138 5 5 1324 356 0 0 22 chr12 96879654 96879699 -24377831 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 5 1324 329 283 76 0 chr12 96881732 96881824 -24375706 + ID_B1 SINE B4 118 216 -8 5 1324 432 143 0 0 chr12 96883856 96883919 -24373611 + B1_Mur4 SINE Alu 44 106 -44 5 1324 5612 27 0 0 chr12 96884831 96885572 -24371958 - L1Md_A LINE L1 -333 6249 5509 5 1324 2636 35 0 0 chr12 96885572 96885889 -24371641 + L1Md_T LINE L1 6263 6579 -3 5 1324 21 0 0 0 chr12 96886486 96886507 -24371023 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 8111 42 0 2 chr12 96886784 96887768 -24369762 - L1Md_F2 LINE L1 -1 6581 5600 5 1324 1970 184 31 29 chr12 96887992 96888378 -24369152 - ORR1B1 LTR MaLR -7 387 1 5 1324 501 17 0 0 chr12 96888772 96888830 -24368700 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1324 570 29 0 0 chr12 96888833 96888901 -24368629 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1324 1326 253 16 44 chr12 96891768 96892156 -24365374 + MTEb LTR MaLR 1 377 -2 5 1324 270 0 0 0 chr12 96892270 96892300 -24365230 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1324 264 245 42 21 chr12 96892976 96893118 -24364412 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 5 1324 912 44 0 0 chr12 96893343 96893456 -24364074 + (TA)n Simple_repeat Simple_repeat 1 113 0 5 1324 227 188 22 66 chr12 96893673 96893764 -24363766 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 5 1324 399 331 87 73 chr12 96894901 96895346 -24362184 + MLT1G3 LTR MaLR 1 451 -144 5 1324 487 320 25 46 chr12 96895346 96895585 -24361945 + MER31A LTR ERV1 1 234 -251 5 1324 291 227 0 57 chr12 96895985 96896055 -24361475 - Lx8 LINE L1 -367 7106 7041 5 1324 309 26 0 0 chr12 96896097 96896135 -24361395 + (TATG)n Simple_repeat Simple_repeat 2 39 0 5 1324 2716 176 89 10 chr12 96896137 96896722 -24360808 - Lx4B LINE L1 -4 7054 6424 5 1324 1876 292 58 13 chr12 96896727 96897414 -24360116 - Lx8 LINE L1 -519 6954 6237 5 1324 551 356 5 50 chr12 96898399 96898618 -24358912 + B4A SINE B4 4 212 -80 5 1324 504 48 0 0 chr12 96899281 96899344 -24358186 + (GAAAA)n Simple_repeat Simple_repeat 4 66 0 5 1324 391 293 92 41 chr12 96900281 96900573 -24356957 + MLT1A1 LTR MaLR 57 406 -2 5 1324 274 273 60 97 chr12 96900656 96900790 -24356740 + RMER15 LTR ERVL 2 130 -445 5 1324 417 365 71 31 chr12 96900808 96901102 -24356428 + RMER15 LTR ERVL 270 575 0 5 1324 371 74 0 18 chr12 96903633 96903688 -24353842 - L1Md_F3 LINE L1 -397 6187 6134 5 1324 3310 40 2 2 chr12 96903688 96904092 -24353438 + L1Md_F3 LINE L1 6181 6584 0 5 1324 1090 132 39 31 chr12 96904999 96905258 -24352272 + Lx LINE L1 6340 6632 -6 5 1324 227 309 88 26 chr12 96905650 96905763 -24351767 + MIRb SINE MIR 67 186 -82 5 1324 218 226 101 109 chr12 96905769 96905888 -24351642 - L2a LINE L2 0 3426 3309 5 1324 207 0 0 0 chr12 96906053 96906076 -24351454 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 5 1324 1869 154 67 44 chr12 96907499 96907885 -24349645 + Lx3C LINE L1 6582 6976 0 5 1324 198 103 0 0 chr12 96907903 96907932 -24349598 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 5 1324 591 348 15 10 chr12 96908424 96908630 -24348900 + B3 SINE B2 9 215 -1 5 1324 437 303 78 26 chr12 96908759 96909016 -24348514 - Lx7 LINE L1 -5 7691 7357 5 1324 237 65 0 0 chr12 96909016 96909047 -24348483 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1324 437 300 126 32 chr12 96909047 96909271 -24348259 - Lx7 LINE L1 -340 7356 7120 5 1324 429 20 0 0 chr12 96909376 96909426 -24348104 + (TTAG)n Simple_repeat Simple_repeat 3 52 0 5 1324 880 239 23 51 chr12 96909651 96909867 -24347663 + B3 SINE B2 5 214 -2 5 1324 7719 28 0 4 chr12 96910385 96911295 -24346235 + L1Md_A LINE L1 5677 6582 0 5 1324 1628 50 0 0 chr12 96911300 96911502 -24346028 + L1Md_T LINE L1 6381 6582 0 5 1324 303 28 0 0 chr12 96911776 96911812 -24345718 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1324 297 0 0 0 chr12 96911858 96911891 -24345639 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1324 289 271 44 53 chr12 96912637 96912750 -24344780 - B3A SINE B2 -84 114 3 5 1324 21 0 0 0 chr12 96912750 96912771 -24344759 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 257 137 0 38 chr12 96913080 96913133 -24344397 + (CATA)n Simple_repeat Simple_repeat 4 54 0 5 1324 288 0 0 0 chr12 96913604 96913636 -24343894 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 1324 359 290 29 20 chr12 96914647 96914749 -24342781 + MER58A DNA MER1_type 10 112 -112 5 1324 291 159 0 0 chr12 96914764 96914833 -24342697 - Lx2B LINE L1 0 7000 6932 5 1324 242 139 96 14 chr12 96915508 96915581 -24341949 - RMER1B Other Other 0 1066 988 5 1324 1205 40 0 0 chr12 96915612 96915762 -24341768 - L1_Mus1 LINE L1 -1 6566 6417 5 1324 269 70 0 44 chr12 96917567 96917612 -24339918 + (CAT)n Simple_repeat Simple_repeat 3 45 0 5 1324 691 203 49 0 chr12 96917612 96917735 -24339795 - B1_Mus1 SINE Alu -19 129 1 6 1324 759 83 0 0 chr12 96917736 96917857 -24339673 + (TAG)n Simple_repeat Simple_repeat 1 121 0 6 1324 1988 297 60 40 chr12 96919887 96920709 -24336821 - Lx8 LINE L1 -2 7471 6644 6 1324 495 0 0 0 chr12 96920709 96920764 -24336766 + (TAA)n Simple_repeat Simple_repeat 3 57 0 6 1324 1988 297 60 40 chr12 96920764 96920847 -24336683 - Lx8 LINE L1 -830 6643 6548 6 1324 1267 276 42 24 chr12 96921206 96921632 -24335898 + Lx8 LINE L1 6134 6567 -906 6 1324 378 0 0 0 chr12 96921995 96922037 -24335493 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1324 668 202 22 50 chr12 96923179 96923361 -24334169 - Lx7 LINE L1 0 7696 7520 6 1324 234 163 82 0 chr12 96923364 96923413 -24334117 + Lx6 LINE L1 6529 6581 -879 6 1324 579 256 25 40 chr12 96923413 96923632 -24333898 + MTEa-int LTR MaLR 120 356 -1224 6 1324 1824 307 136 7 chr12 96923617 96924300 -24333230 + MTEa-int LTR MaLR 809 1579 -1 6 1324 966 308 49 28 chr12 96924301 96924628 -24332902 + MTEa LTR MaLR 1 334 -45 6 1324 219 299 197 0 chr12 96925340 96925477 -24332053 - MIRc SINE MIR -71 197 34 6 1324 883 351 87 29 chr12 96927060 96927712 -24329818 + Lx9 LINE L1 6624 7313 -331 6 1324 717 128 0 0 chr12 96927842 96927990 -24329540 + (TC)n Simple_repeat Simple_repeat 1 148 0 6 1324 378 0 0 0 chr12 96927991 96928033 -24329497 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1324 453 36 0 0 chr12 96928140 96928195 -24329335 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 6 1324 611 26 13 0 chr12 96928195 96928272 -24329258 + (GGGA)n Simple_repeat Simple_repeat 3 80 0 6 1324 586 135 92 268 chr12 96928285 96928599 -24328931 - L1_Mur2 LINE L1 -998 4879 4621 6 1324 186 43 0 0 chr12 96931022 96931045 -24326485 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1324 21 0 0 0 chr12 96933624 96933645 -24323885 + GC_rich Low_complexity Low_complexity 1 21 0 6 1324 243 200 62 0 chr12 96934341 96934421 -24323109 + G-rich Low_complexity Low_complexity 1 85 0 6 1324 1086 48 0 0 chr12 96940104 96940249 -24317281 + (TG)n Simple_repeat Simple_repeat 2 146 0 6 1324 530 235 49 70 chr12 96940993 96941135 -24316395 - B1_Mur4 SINE Alu -7 143 5 6 1324 1021 191 53 47 chr12 96941541 96941860 -24315670 - Lx9 LINE L1 -9 7635 7315 6 1324 202 365 26 52 chr12 96942235 96942388 -24315142 + MIRc SINE MIR 14 162 -106 6 1324 210 200 0 43 chr12 96942441 96942488 -24315042 + GA-rich Low_complexity Low_complexity 2 46 0 6 1324 712 313 75 40 chr12 96943217 96943578 -24313952 + MTD LTR MaLR 2 409 -12 6 1324 363 44 0 0 chr12 96943780 96943825 -24313705 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1324 25 0 0 0 chr12 96944164 96944189 -24313341 + AT_rich Low_complexity Low_complexity 1 25 0 6 1324 414 0 0 0 chr12 96944677 96944723 -24312807 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1324 221 38 113 0 chr12 96946720 96946773 -24310757 + T-rich Low_complexity Low_complexity 3 61 0 6 1324 1002 116 7 0 chr12 96946776 96946922 -24310608 - B1_Mus1 SINE Alu 0 148 2 6 1324 981 46 138 0 chr12 96947901 96948031 -24309499 - B1_Mus1 SINE Alu 0 148 1 6 1324 261 0 0 0 chr12 96950640 96950669 -24306861 + (TTA)n Simple_repeat Simple_repeat 3 31 0 6 1324 511 85 0 24 chr12 96950669 96950753 -24306777 + (TAG)n Simple_repeat Simple_repeat 1 82 0 6 1324 409 328 62 10 chr12 96950806 96951000 -24306530 - B3 SINE B2 -10 206 3 6 1324 229 262 219 7 chr12 96954768 96954914 -24302616 - Lx7 LINE L1 0 7696 7520 6 1324 272 48 0 23 chr12 96955194 96955237 -24302293 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 1324 26 30 0 0 chr12 96955695 96955728 -24301802 + AT_rich Low_complexity Low_complexity 1 33 0 6 1324 333 328 127 47 chr12 96955736 96955989 -24301541 + B4 SINE B4 2 274 -18 6 1324 444 37 0 0 chr12 96956180 96956234 -24301296 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1324 360 119 0 0 chr12 96956234 96956293 -24301237 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1324 368 306 73 9 chr12 96956302 96956411 -24301119 - RSINE1 SINE B4 -46 119 4 6 1324 1119 69 7 0 chr12 96956712 96956857 -24300673 + B1_Mm SINE Alu 1 146 -1 6 1324 1032 151 0 0 chr12 96956865 96957044 -24300486 + GA-rich Low_complexity Low_complexity 2 180 0 6 1324 258 32 0 0 chr12 96957045 96957076 -24300454 + (GAAA)n Simple_repeat Simple_repeat 1 31 0 6 1324 432 170 0 0 chr12 96958242 96958348 -24299182 + (TG)n Simple_repeat Simple_repeat 1 106 0 6 1324 21 0 0 0 chr12 96959082 96959103 -24298427 + AT_rich Low_complexity Low_complexity 1 21 0 6 1324 222 37 0 0 chr12 96959697 96959724 -24297806 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1324 900 254 16 5 chr12 96961536 96961730 -24295800 + B3 SINE B2 4 199 -17 6 1324 195 42 0 0 chr12 96961733 96961757 -24295773 + (TAA)n Simple_repeat Simple_repeat 3 26 0 6 1324 297 0 0 0 chr12 96964340 96964373 -24293157 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1324 330 26 0 0 chr12 96964693 96964732 -24292798 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 6 1324 537 55 0 0 chr12 96965781 96965854 -24291676 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 6 1324 219 69 0 0 chr12 96965858 96965887 -24291643 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1324 699 35 0 0 chr12 96966876 96966962 -24290568 + (CA)n Simple_repeat Simple_repeat 2 87 0 6 1324 326 327 39 0 chr12 96967169 96967325 -24290205 + MER2 DNA MER2_type 132 293 -52 6 1324 312 331 83 0 chr12 96969048 96969169 -24288361 - ID_B1 SINE B4 -6 218 88 6 1324 197 366 48 16 chr12 96970460 96970585 -24286945 + L2c LINE L2 3073 3201 -186 6 1324 23 0 0 0 chr12 96971430 96971453 -24286077 + AT_rich Low_complexity Low_complexity 1 23 0 6 1324 1030 269 143 41 chr12 96971480 96972095 -24285435 + Lx9 LINE L1 6965 7642 -2 6 1324 201 139 0 0 chr12 96973603 96973646 -24283884 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1324 22 70 0 0 chr12 96976070 96976113 -24281417 + AT_rich Low_complexity Low_complexity 1 43 0 6 1324 288 0 0 0 chr12 96978309 96978341 -24279189 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1324 270 0 0 0 chr12 96978375 96978405 -24279125 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1324 189 0 0 0 chr12 96978586 96978607 -24278923 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1324 1042 85 35 0 chr12 96978896 96979037 -24278493 + B1_Mm SINE Alu 2 147 0 6 1324 397 245 37 103 chr12 96979129 96979402 -24278128 + RMER17D LTR ERVK 175 429 -460 6 1324 258 136 0 0 chr12 96981194 96981238 -24276292 + (TAA)n Simple_repeat Simple_repeat 3 46 0 6 1324 283 309 0 0 chr12 96984123 96984191 -24273339 - ID2 SINE ID -14 69 2 6 1324 279 286 28 28 chr12 96984197 96984305 -24273225 - MIRb SINE MIR -77 191 84 6 1324 461 233 19 0 chr12 96984652 96984755 -24272775 + B3A SINE B2 1 105 -93 6 1324 210 37 0 0 chr12 96985307 96985334 -24272196 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1324 1133 82 0 0 chr12 96986067 96986214 -24271316 - B1_Mus1 SINE Alu 0 148 2 6 1324 228 86 0 0 chr12 96986343 96986378 -24271152 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 6 1324 252 224 89 130 chr12 96986698 96986821 -24270709 - MER20 DNA MER1_type -47 172 55 6 1324 194 207 207 0 chr12 96987153 96987211 -24270319 + MIRm SINE MIR 42 111 -165 6 1324 327 177 0 0 chr12 96987230 96987292 -24270238 + CT-rich Low_complexity Low_complexity 2 63 0 6 1324 229 149 0 0 chr12 96988860 96988907 -24268623 - MER33 DNA MER1_type -104 220 174 6 1324 579 81 0 0 chr12 96989002 96989088 -24268442 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1324 1128 219 49 14 chr12 96989149 96989436 -24268094 + Lx9 LINE L1 7101 7397 -247 6 1324 387 148 22 11 chr12 96989509 96989598 -24267932 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 1324 1706 136 4 4 chr12 96990149 96990423 -24267107 + Lx LINE L1 6375 6648 -6 6 1324 261 0 0 0 chr12 96990425 96990454 -24267076 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 1324 1202 306 33 6 chr12 96991775 96992140 -24265390 + MTE2b LTR MaLR 1 375 -4 6 1325 525 16 0 0 chr12 96993956 96994018 -24263512 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1325 638 338 71 8 chr12 96994054 96994322 -24263208 - B4A SINE B4 -5 287 3 6 1325 22 56 0 0 chr12 96994876 96994912 -24262618 + AT_rich Low_complexity Low_complexity 1 36 0 6 1325 2939 103 26 0 chr12 96994914 96995379 -24262151 - MusHAL1 LINE L1 -662 2050 1574 6 1325 6750 49 4 10 chr12 96995371 96996270 -24261260 + L1_Mus1 LINE L1 5673 6566 -1 6 1325 638 342 30 70 chr12 96998468 96998770 -24258760 + B4A SINE B4 2 291 -1 6 1325 227 227 0 15 chr12 96998819 96998886 -24258644 + CT-rich Low_complexity Low_complexity 3 68 0 6 1325 552 30 0 0 chr12 96998980 96999046 -24258484 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 6 1325 882 138 0 0 chr12 96999075 96999205 -24258325 - B2_Mm2 SINE B2 -65 130 1 6 1325 27 49 0 0 chr12 97000915 97000956 -24256574 + AT_rich Low_complexity Low_complexity 1 41 0 1 1325 255 203 0 0 chr12 97002244 97002303 -24255227 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1325 303 247 71 0 chr12 97003113 97003198 -24254332 - L1MEg LINE L1 -4125 1959 1869 3 1325 228 333 13 0 chr12 97004576 97004651 -24252879 + PB1D10 SINE Alu 13 88 -29 4 1325 216 333 73 18 chr12 97004830 97004940 -24252590 + MIR SINE MIR 79 194 -68 5 1325 189 179 275 29 chr12 97005574 97005643 -24251887 + L3 LINE CR1 2127 2212 -2277 6 1325 618 276 37 77 chr12 97005946 97006256 -24251274 - MLT1B LTR MaLR -18 372 28 7 1325 261 146 0 0 chr12 97007616 97007664 -24249866 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 8 1325 200 273 0 0 chr12 97007664 97007708 -24249822 - L4 LINE RTE -4 2025 1982 9 1325 534 366 39 35 chr12 97008467 97008722 -24248808 + B4 SINE B4 14 269 -23 1 1325 181 185 36 18 chr12 97009688 97009743 -24247787 + CT-rich Low_complexity Low_complexity 2 57 0 1 1325 225 246 65 16 chr12 97011655 97011717 -24245813 - LTR88c LTR Genie? -787 75 11 1 1325 231 286 16 0 chr12 97011955 97012018 -24245512 - MIRb SINE MIR -181 87 24 1 1325 381 297 22 0 chr12 97013236 97013327 -24244203 - ID_B1 SINE B4 -107 117 25 1 1325 231 250 169 15 chr12 97013273 97013338 -24244192 - ID4_ SINE ID -6 77 3 1 1325 1950 212 24 102 chr12 97014403 97014913 -24242617 - RLTR40 LTR ERVK -10 807 338 1 1325 255 340 94 28 chr12 97014915 97015021 -24242509 - B4A SINE B4 -179 113 1 1 1325 24 0 0 0 chr12 97015120 97015144 -24242386 + AT_rich Low_complexity Low_complexity 1 24 0 1 1325 462 36 0 0 chr12 97015977 97016033 -24241497 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1325 22 0 0 0 chr12 97019306 97019328 -24238202 + AT_rich Low_complexity Low_complexity 1 22 0 2 1325 191 327 45 63 chr12 97022795 97022906 -24234624 + L3 LINE CR1 2151 2259 -2230 2 1325 3716 73 2 57 chr12 97025049 97025589 -24231941 + L1_Mus2 LINE L1 6049 6558 -8 2 1325 608 236 8 8 chr12 97026075 97026199 -24231331 - RSINE1 SINE B4 -38 127 4 2 1325 250 321 78 50 chr12 97026949 97027105 -24230425 + MIR SINE MIR 12 175 -93 2 1325 350 280 149 62 chr12 97028938 97029132 -24228398 + B3 SINE B2 5 215 -1 2 1325 21 0 0 0 chr12 97030076 97030097 -24227433 + AT_rich Low_complexity Low_complexity 1 21 0 2 1325 24 0 0 0 chr12 97030350 97030374 -24227156 + AT_rich Low_complexity Low_complexity 1 24 0 2 1325 283 0 47 23 chr12 97032761 97032804 -24224726 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2 1325 283 364 162 39 chr12 97032983 97033292 -24224238 + LTR16A LTR ERVL 85 431 -20 2 1325 39214 34 3 6 chr12 97035288 97041658 -24215872 - L1Md_T LINE L1 -3 6579 232 3 1325 409 324 47 12 chr12 97042316 97042488 -24215042 - MTEa-int LTR MaLR -1399 181 4 3 1325 739 295 98 90 chr12 97042478 97042854 -24214676 - MTEa LTR MaLR 0 379 1 3 1325 296 299 10 30 chr12 97043467 97043567 -24213963 - MLT1A1 LTR MaLR 0 408 311 3 1325 845 37 0 9 chr12 97043618 97043728 -24213802 + (TTC)n Simple_repeat Simple_repeat 3 111 0 3 1325 1242 100 0 0 chr12 97043728 97043908 -24213622 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1325 5173 132 18 6 chr12 97043917 97044742 -24212788 - Lx LINE L1 -4 6650 5816 3 1325 3018 128 0 0 chr12 97044742 97045196 -24212334 + Lx LINE L1 5357 5810 -73 3 1325 271 276 37 19 chr12 97046049 97046156 -24211374 + ERVL-B4-int LTR ERVL 4516 4624 -1090 3 1325 872 138 7 28 chr12 97047735 97047877 -24209653 - Lx3B LINE L1 -161 6812 6674 3 1325 727 183 70 25 chr12 97047879 97048036 -24209494 + Lx3B LINE L1 6808 6971 -2 3 1325 7949 57 2 2 chr12 97048879 97050007 -24207523 - L1Md_F2 LINE L1 0 6582 5455 3 1325 813 192 160 0 chr12 97050047 97050260 -24207270 - Lx9 LINE L1 -9 7635 7389 3 1325 281 290 67 18 chr12 97050383 97050548 -24206982 - L1MEe LINE L1 -4154 700 528 4 1325 2533 226 57 60 chr12 97050734 97051403 -24206127 - RMER1B Other Other -13 1053 387 4 1325 1232 301 58 80 chr12 97051403 97051950 -24205580 - RMER1A Other Other -542 524 54 4 1325 233 197 0 15 chr12 97051950 97052017 -24205513 + GA-rich Low_complexity Low_complexity 3 68 0 4 1325 276 299 10 10 chr12 97052028 97052126 -24205404 + (CAA)n Simple_repeat Simple_repeat 3 100 0 4 1325 396 0 0 0 chr12 97052265 97052309 -24205221 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1325 29 28 0 0 chr12 97052820 97052856 -24204674 + AT_rich Low_complexity Low_complexity 1 36 0 4 1325 380 316 82 44 chr12 97054101 97054260 -24203270 + B3A SINE B2 12 176 -22 4 1325 630 305 132 8 chr12 97054363 97054598 -24202932 + L1_Mur3 LINE L1 287 550 -7162 4 1325 2306 243 41 4 chr12 97054604 97055146 -24202384 + Lx7 LINE L1 6803 7364 -332 4 1325 1081 214 73 45 chr12 97055233 97055546 -24201984 + Lx7 LINE L1 7375 7696 0 4 1325 215 135 0 88 chr12 97056839 97056896 -24200634 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 5 1325 193 306 123 14 chr12 97057142 97057215 -24200315 + MIRb SINE MIR 39 119 -149 5 1325 1114 267 86 12 chr12 97057663 97058000 -24199530 - ORR1D1 LTR MaLR -12 362 1 5 1325 516 360 51 28 chr12 97058993 97059247 -24198283 + B4A SINE B4 17 276 -16 5 1325 23 54 0 0 chr12 97059524 97059561 -24197969 + AT_rich Low_complexity Low_complexity 1 37 0 5 1325 315 0 0 0 chr12 97059677 97059712 -24197818 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1325 35420 37 1 1 chr12 97060255 97066538 -24190992 + L1Md_Gf LINE L1 1 5589 -297 5 1325 8990 5 0 0 chr12 97066538 97067534 -24189996 + L1Md_T LINE L1 5587 6582 0 5 1325 35420 43 0 1 chr12 97067534 97067559 -24189971 + L1Md_Gf LINE L1 5590 5613 -273 5 1325 183 129 0 0 chr12 97068157 97068188 -24189342 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1325 21 0 0 0 chr12 97068204 97068225 -24189305 + AT_rich Low_complexity Low_complexity 1 21 0 5 1325 2679 167 15 2 chr12 97068232 97068688 -24188842 - Lx4A LINE L1 0 7058 6597 6 1325 255 206 143 0 chr12 97068691 97068754 -24188776 + ORR1D1-int LTR MaLR 1297 1368 -2 6 1325 1353 221 111 54 chr12 97068750 97069066 -24188464 + ORR1D1 LTR MaLR 2 347 -27 6 1325 1663 185 3 55 chr12 97069066 97069409 -24188121 - ORR1A4 LTR MaLR -4 325 1 6 1325 1353 221 111 54 chr12 97069409 97069445 -24188085 + ORR1D1 LTR MaLR 348 374 0 6 1325 346 327 140 97 chr12 97069752 97070094 -24187436 - ORR1E LTR MaLR -2 357 1 6 1325 241 356 72 20 chr12 97070314 97070466 -24187064 - MLT2B4 LTR ERVL -60 496 337 6 1325 1690 209 44 24 chr12 97070544 97071064 -24186466 + RLTR12A LTR ERVK 1 564 -4 6 1325 23 33 0 0 chr12 97071158 97071188 -24186342 + AT_rich Low_complexity Low_complexity 1 30 0 6 1325 4725 32 2 4 chr12 97071188 97071751 -24185779 - L1Md_F2 LINE L1 -14 6568 6007 6 1325 899 137 202 0 chr12 97072364 97072547 -24184983 + URR1A DNA MER1_type 1 220 -6 6 1325 232 279 27 54 chr12 97072626 97072774 -24184756 - L1M1 LINE L1 -378 5922 5779 6 1325 251 358 46 6 chr12 97072774 97072948 -24184582 + L1_Mur3 LINE L1 2365 2545 -3335 7 1325 288 0 0 0 chr12 97073252 97073284 -24184246 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1325 30 59 0 0 chr12 97073362 97073413 -24184117 + AT_rich Low_complexity Low_complexity 1 51 0 7 1325 315 122 0 0 chr12 97074109 97074158 -24183372 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1325 188 198 0 71 chr12 97074763 97074861 -24182669 + T-rich Low_complexity Low_complexity 4 94 0 7 1325 719 204 7 20 chr12 97075450 97075600 -24181930 - B1_Mur4 SINE Alu -1 149 2 7 1325 1300 229 76 23 chr12 97075957 97076362 -24181168 + Lx9 LINE L1 6991 7478 -166 7 1325 333 0 0 0 chr12 97076362 97076399 -24181131 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1325 1300 194 95 35 chr12 97076399 97076532 -24180998 + Lx9 LINE L1 7479 7635 -9 7 1325 890 252 76 139 chr12 97077544 97077926 -24179604 - MTE2a LTR MaLR -19 360 3 7 1325 444 304 18 53 chr12 97078517 97078687 -24178843 - RSINE1 SINE B4 -1 164 1 7 1325 415 274 95 17 chr12 97079256 97079497 -24178033 - L1MC4a LINE L1 -236 7646 7387 8 1325 261 0 0 0 chr12 97080683 97080712 -24176818 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1325 389 322 130 38 chr12 97080723 97080962 -24176568 - RMER20B LTR ERVK -242 385 125 8 1325 317 371 64 17 chr12 97081110 97081283 -24176247 + B4A SINE B4 95 275 -17 8 1325 545 72 12 0 chr12 97081292 97081375 -24176155 + (CA)n Simple_repeat Simple_repeat 2 85 0 8 1325 6582 245 45 47 chr12 97081633 97083406 -24174124 + Lx6 LINE L1 5688 7456 -4 8 1325 1077 108 0 0 chr12 97083571 97083719 -24173811 - B1_Mus1 SINE Alu 0 148 1 8 1325 309 131 0 0 chr12 97083886 97083947 -24173583 + (T)n Simple_repeat Simple_repeat 1 61 0 8 1325 203 191 24 0 chr12 97084394 97084436 -24173094 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 1325 228 211 41 251 chr12 97085553 97085724 -24171806 + RLTR13D1 LTR ERVK 85 219 -587 8 1325 734 349 39 49 chr12 97086245 97086531 -24170999 - B4A SINE B4 0 292 10 9 1325 609 14 0 0 chr12 97086555 97086625 -24170905 + (GA)n Simple_repeat Simple_repeat 1 70 0 9 1325 684 191 61 0 chr12 97086632 97086779 -24170751 - MT2B LTR ERVL -55 546 391 9 1325 21 0 0 0 chr12 97087811 97087832 -24169698 + AT_rich Low_complexity Low_complexity 1 21 0 9 1325 237 75 37 19 chr12 97087979 97088033 -24169497 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 9 1325 1097 195 75 11 chr12 97089630 97089899 -24167631 - RLTR15 LTR ERVK 0 359 1 9 1325 1085 202 28 0 chr12 97090106 97090324 -24167206 + URR1B DNA MER1_type 1 224 -1 9 1325 25 0 0 0 chr12 97090899 97090924 -24166606 + AT_rich Low_complexity Low_complexity 1 25 0 9 1325 283 279 58 11 chr12 97091293 97091380 -24166150 + Lx9 LINE L1 7103 7193 -451 9 1325 265 276 35 0 chr12 97091530 97091617 -24165913 + (CATA)n Simple_repeat Simple_repeat 1 90 0 9 1325 2451 184 33 10 chr12 97091633 97092149 -24165381 + RLTR11A LTR ERVK 1 528 0 1 1325 21 0 0 0 chr12 97092393 97092414 -24165116 + AT_rich Low_complexity Low_complexity 1 21 0 1 1325 506 156 9 9 chr12 97092437 97092547 -24164983 - Lx3A LINE L1 -5 6976 6867 1 1325 29 28 0 0 chr12 97092717 97092753 -24164777 + AT_rich Low_complexity Low_complexity 1 36 0 1 1325 243 0 0 0 chr12 97094010 97094037 -24163493 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1325 1163 68 0 13 chr12 97095020 97095169 -24162361 - B1_Mm SINE Alu 0 147 1 1 1325 261 369 6 71 chr12 97095359 97095528 -24162002 - RMER4B LTR ERVK -402 183 26 1 1325 2861 103 2 17 chr12 97095542 97095955 -24161575 + MTB_Mm LTR MaLR 1 407 0 1 1325 184 93 70 0 chr12 97095961 97096004 -24161526 + T-rich Low_complexity Low_complexity 4 49 0 1 1325 1620 161 84 16 chr12 97096032 97096342 -24161188 - Lx4B LINE L1 -240 6818 6488 1 1325 895 195 40 36 chr12 97096341 97096564 -24160966 + Lx4B LINE L1 6828 7051 -7 1 1325 1475 254 52 8 chr12 97096604 97096970 -24160560 + MTD LTR MaLR 35 416 -3 1 1325 25436 81 14 1 chr12 97097146 97100672 -24156858 + L1Md_F2 LINE L1 2013 5585 -298 1 1325 7224 79 7 3 chr12 97100673 97101653 -24155877 + L1Md_F2 LINE L1 5587 6570 -12 1 1325 770 188 7 7 chr12 97101688 97101833 -24155697 + B1_Mur4 SINE Alu 5 149 -1 1 1325 1441 276 184 34 chr12 97101908 97102434 -24155096 + MTE-int LTR MaLR 974 1578 -2 1 1325 26 30 0 0 chr12 97103965 97103998 -24153532 + AT_rich Low_complexity Low_complexity 1 33 0 1 1325 8527 113 50 9 chr12 97104008 97105484 -24152046 + Lx3A LINE L1 5464 6974 -7 1 1325 1144 62 0 14 chr12 97105504 97105652 -24151878 + B1_Mus2 SINE Alu 1 146 -1 1 1325 344 255 10 0 chr12 97105694 97105792 -24151738 - Lx2B LINE L1 -39 6961 6863 1 1325 590 187 7 0 chr12 97108132 97108282 -24149248 + CT-rich Low_complexity Low_complexity 2 152 0 1 1325 504 0 0 0 chr12 97108897 97108953 -24148577 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1325 324 294 29 0 chr12 97109100 97109202 -24148328 + L1MC3 LINE L1 6681 6785 -1000 1 1325 307 320 81 5 chr12 97109369 97109567 -24147963 + L1MC3 LINE L1 6951 7163 -622 1 1325 372 63 16 0 chr12 97109631 97109694 -24147836 + Lx LINE L1 6591 6654 0 1 1325 310 352 96 64 chr12 97110414 97110696 -24146834 + B4 SINE B4 2 292 0 1 1325 2181 146 141 39 chr12 97111291 97111775 -24145755 - RMER16 LTR ERVK 0 533 1 1 1325 280 323 20 20 chr12 97111986 97112084 -24145446 - MER5B DNA MER1_type -16 162 65 1 1325 297 0 0 0 chr12 97114051 97114084 -24143446 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1325 210 132 0 50 chr12 97114342 97114382 -24143148 + B3 SINE B2 93 130 -86 1 1325 26 30 0 0 chr12 97114417 97114450 -24143080 + AT_rich Low_complexity Low_complexity 1 33 0 1 1325 491 311 93 41 chr12 97115407 97115675 -24141855 + Tigger9a DNA Tigger 30 311 -421 1 1325 844 289 50 50 chr12 97115881 97116223 -24141307 + ORR1E LTR MaLR 14 355 -4 1 1325 262 339 75 40 chr12 97116593 97116820 -24140710 - MLT1B LTR MaLR -89 301 67 1 1325 533 319 0 0 chr12 97119497 97119613 -24137917 + RSINE1 SINE B4 20 135 -30 1 1325 450 0 0 0 chr12 97119639 97119689 -24137841 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1 1325 690 190 43 0 chr12 97120250 97120413 -24137117 + Lx2 LINE L1 6827 6996 -1 1 1325 395 140 6 12 chr12 97120462 97120543 -24136987 - L1_Mm LINE L1 -2401 3745 3634 1 1325 11979 166 13 15 chr12 97120536 97123330 -24134200 - L1VL4 LINE L1 -507 3052 273 1 1325 723 320 4 38 chr12 97123719 97123956 -24133574 + B4 SINE B4 1 229 -63 1 1326 1139 245 51 7 chr12 97124627 97124903 -24132627 - ORR1D1 LTR MaLR -86 288 1 1 1326 2475 142 0 12 chr12 97126237 97126643 -24130887 - Lx LINE L1 -7 6647 6247 1 1326 216 0 0 0 chr12 97127043 97127067 -24130463 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1326 268 282 0 53 chr12 97127309 97127384 -24130146 - B4A SINE B4 -219 73 3 1 1326 261 364 30 0 chr12 97127387 97127486 -24130044 - B1_Mus1 SINE Alu -46 102 1 1 1326 2653 171 87 12 chr12 97127702 97128210 -24129320 + Lx4A LINE L1 6503 7048 -10 1 1326 315 0 0 0 chr12 97128216 97128251 -24129279 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1326 327 363 83 11 chr12 97128380 97128561 -24128969 - MLT1F LTR MaLR -171 377 184 1 1326 28 29 0 0 chr12 97129608 97129643 -24127887 + AT_rich Low_complexity Low_complexity 1 35 0 1 1326 7570 58 0 1 chr12 97130257 97131211 -24126319 + L1Md_T LINE L1 5630 6582 0 1 1326 2850 121 6 38 chr12 97131218 97131698 -24125832 - Lx3A LINE L1 -585 6396 5932 1 1326 1978 119 0 10 chr12 97131698 97131996 -24125534 + Lx3A LINE L1 6390 6684 -297 1 1326 1050 103 0 7 chr12 97132008 97132154 -24125376 + B1_Mm SINE Alu 1 145 -2 1 1326 396 0 0 0 chr12 97132154 97132198 -24125332 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 1326 689 237 7 14 chr12 97132471 97132612 -24124918 - B3A SINE B2 -57 141 2 1 1326 363 212 0 0 chr12 97133286 97133366 -24124164 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 1326 1184 65 0 0 chr12 97133557 97133710 -24123820 - L1Md_F2 LINE L1 -541 6041 5889 1 1326 1682 111 4 8 chr12 97133710 97133965 -24123565 + L1Md_F2 LINE L1 6322 6575 -7 1 1326 3146 159 23 14 chr12 97134042 97134616 -24122914 - L1_Mur2 LINE L1 -374 5503 4925 1 1326 7483 96 14 2 chr12 97134613 97135719 -24121811 + L1_Mus4 LINE L1 5513 6629 -7 1 1326 346 265 92 64 chr12 97135877 97136018 -24121512 - L1MEf LINE L1 -4703 1497 1353 1 1326 1918 166 64 19 chr12 97136037 97136411 -24121119 + Lx3A LINE L1 6583 6973 -8 1 1326 21 0 0 0 chr12 97137922 97137943 -24119587 + AT_rich Low_complexity Low_complexity 1 21 0 1 1326 714 136 0 0 chr12 97138026 97138144 -24119386 + (TC)n Simple_repeat Simple_repeat 2 119 0 1 1326 2541 219 27 27 chr12 97138155 97138704 -24118826 - Lx4A LINE L1 -8 7050 6502 1 1326 1522 180 7 13 chr12 97138697 97138995 -24118535 - L1_Mur2 LINE L1 -30 5847 5552 1 1326 235 299 0 13 chr12 97139956 97140034 -24117496 + T-rich Low_complexity Low_complexity 3 79 0 1 1326 207 0 0 0 chr12 97140127 97140150 -24117380 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1326 1111 260 132 15 chr12 97140537 97140869 -24116661 - Lx5 LINE L1 -5 7045 6675 1 1326 651 48 0 0 chr12 97140886 97140969 -24116561 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 1 1326 247 271 0 30 chr12 97141497 97141596 -24115934 + L1_Rod LINE L1 5019 5114 -733 1 1326 587 317 58 24 chr12 97141682 97141973 -24115557 + Lx7 LINE L1 5614 5914 -1782 1 1326 450 0 0 0 chr12 97142189 97142239 -24115291 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1326 441 0 0 0 chr12 97142239 97142287 -24115243 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1326 286 262 51 86 chr12 97142414 97142531 -24114999 + Lx8 LINE L1 7115 7227 -246 1 1326 265 256 22 11 chr12 97142531 97142622 -24114908 + GA-rich Low_complexity Low_complexity 1 92 0 1 1326 24 0 0 0 chr12 97143136 97143160 -24114370 + AT_rich Low_complexity Low_complexity 1 24 0 1 1326 1653 209 66 30 chr12 97143265 97143631 -24113899 + Lx5 LINE L1 6666 7044 -6 1 1326 387 0 0 0 chr12 97146360 97146403 -24111127 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1326 659 186 8 0 chr12 97146927 97147051 -24110479 + B1_Mus1 SINE Alu 11 135 -13 1 1326 378 74 0 0 chr12 97147051 97147105 -24110425 + (CAA)n Simple_repeat Simple_repeat 1 54 0 1 1326 24 0 0 0 chr12 97147423 97147447 -24110083 + AT_rich Low_complexity Low_complexity 1 24 0 1 1326 990 48 0 0 chr12 97147607 97147731 -24109799 + (TTC)n Simple_repeat Simple_repeat 3 126 0 1 1326 309 51 0 0 chr12 97147731 97147770 -24109760 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1326 807 237 105 0 chr12 97147868 97148087 -24109443 + MERVL_2A-int LTR ERVL 1599 1840 -3921 1 1326 1924 222 52 5 chr12 97148089 97148497 -24109033 + MERVL_2A-int LTR ERVL 1992 2418 -3343 1 1326 281 263 25 38 chr12 97148497 97148576 -24108954 + PB1D9 SINE Alu 43 120 0 1 1326 265 314 68 41 chr12 97149133 97149428 -24108102 + L1MD LINE L1 4636 4938 -1208 1 1326 23 0 0 0 chr12 97149552 97149575 -24107955 + AT_rich Low_complexity Low_complexity 1 23 0 1 1326 9877 194 107 33 chr12 97149689 97150372 -24107158 + L1_Mur2 LINE L1 3171 3814 -2063 1 1326 589 25 25 0 chr12 97150372 97150451 -24107079 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 1326 9877 194 107 33 chr12 97150451 97152252 -24105278 + L1_Mur2 LINE L1 3815 5841 -36 1 1326 4041 244 26 8 chr12 97152278 97153176 -24104354 + Lx5 LINE L1 6137 7050 0 1 1326 228 368 61 27 chr12 97153340 97153488 -24104042 - MER5A DNA MER1_type -33 156 4 1 1326 960 129 7 0 chr12 97153495 97153642 -24103888 + B2_Mm2 SINE B2 20 167 -28 1 1326 2129 235 33 14 chr12 97153996 97154513 -24103017 - RLTR12B LTR ERVK 0 528 2 1 1326 379 327 77 13 chr12 97154514 97154669 -24102861 - Lx8 LINE L1 -238 7235 7071 1 1326 526 86 32 0 chr12 97155856 97155949 -24101581 + (CAGAGA)n Simple_repeat Simple_repeat 1 96 0 1 1326 296 200 0 14 chr12 97155952 97156023 -24101507 + GA-rich Low_complexity Low_complexity 3 72 0 1 1326 435 83 0 0 chr12 97157064 97157124 -24100406 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1 1326 6799 200 48 4 chr12 97157141 97159296 -24098234 - Lx5 LINE L1 -37 7013 4747 1 1326 1013 305 50 96 chr12 97160082 97160726 -24096804 + L1MB3 LINE L1 5403 6062 -121 1 1326 1088 90 0 7 chr12 97160726 97160872 -24096658 + B1_Mus1 SINE Alu 3 147 -1 1 1326 1013 305 50 96 chr12 97160872 97161029 -24096501 + L1MB3 LINE L1 6063 6167 -16 1 1326 2234 138 22 6 chr12 97162431 97162796 -24094734 - Lx LINE L1 0 6654 6284 1 1326 368 341 65 17 chr12 97163208 97163438 -24094092 + MLT1A0 LTR MaLR 117 357 -8 1 1326 272 188 93 12 chr12 97163572 97163658 -24093872 - L1M2 LINE L1 -803 5488 5396 1 1326 269 297 93 39 chr12 97163695 97163975 -24093555 + L1MB1 LINE L1 5815 6109 -59 2 1326 768 216 49 58 chr12 97164028 97164254 -24093276 - Lx7 LINE L1 -74 7622 7399 2 1326 8132 75 1 0 chr12 97164255 97165997 -24091533 + L1Md_F2 LINE L1 4814 6556 -26 2 1326 549 0 0 0 chr12 97165997 97166058 -24091472 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1326 199 93 0 44 chr12 97166104 97166149 -24091381 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1326 1278 252 86 22 chr12 97166167 97166572 -24090958 - Lx7 LINE L1 -345 7351 6921 2 1326 318 87 0 0 chr12 97166972 97167018 -24090512 + (GAAAA)n Simple_repeat Simple_repeat 4 49 0 2 1326 909 108 0 0 chr12 97167088 97167255 -24090275 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 2 1326 661 93 0 176 chr12 97167318 97167488 -24090042 - Lx2 LINE L1 0 6997 6858 2 1326 2144 278 53 75 chr12 97167787 97168903 -24088627 + MYSERV-int LTR ERVK 4040 5130 -1420 2 1326 385 321 83 6 chr12 97168903 97169072 -24088458 + RMER4A LTR ERVK 260 441 -25 2 1326 535 175 91 22 chr12 97169073 97169256 -24088274 + MYSERV6-int LTR ERVK 7768 7946 -1013 2 1326 462 167 0 61 chr12 97169266 97169381 -24088149 - L1Md_F2 LINE L1 0 6582 6475 2 1326 3217 79 21 5 chr12 97169381 97169812 -24087718 + L1_Mus2 LINE L1 6046 6483 -83 2 1326 4201 201 33 36 chr12 97169812 97170820 -24086710 + MYSERV6-int LTR ERVK 7954 8958 -1 2 1326 621 310 29 46 chr12 97170822 97171167 -24086363 + RLTR15 LTR ERVK 1 339 -20 2 1326 3836 249 53 33 chr12 97171172 97172236 -24085294 - Lx6 LINE L1 -634 6826 5741 2 1326 1193 176 0 18 chr12 97172236 97172461 -24085069 - Lx7 LINE L1 0 6654 6434 2 1326 1556 131 215 3 chr12 97172463 97172784 -24084746 + L1_Mur2 LINE L1 3524 3912 -1965 2 1326 298 230 34 11 chr12 97172773 97172861 -24084669 - L1_Mur3 LINE L1 -137 5743 5654 2 1326 581 191 38 0 chr12 97172856 97172987 -24084543 - L1_Mur3 LINE L1 -2463 3417 3282 2 1326 3376 53 9 16 chr12 97173003 97173444 -24084086 - L1Md_F3 LINE L1 -2 6582 6145 2 1326 4687 38 0 6 chr12 97173444 97174117 -24083413 + L1Md_F3 LINE L1 5478 6147 -437 2 1326 1002 173 22 17 chr12 97174133 97174363 -24083167 - L1_Mur3 LINE L1 -2624 3256 3026 2 1326 741 266 24 0 chr12 97174501 97174708 -24082822 - L1_Mur3 LINE L1 -6930 798 587 2 1326 663 238 8 0 chr12 97174823 97174949 -24082581 + B1F2 SINE Alu 1 127 -22 2 1326 25 0 0 0 chr12 97176457 97176482 -24081048 + AT_rich Low_complexity Low_complexity 1 25 0 2 1326 625 358 27 62 chr12 97176895 97177187 -24080343 - B4A SINE B4 0 292 11 2 1326 292 214 34 8 chr12 97177188 97177306 -24080224 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 1326 24 65 0 16 chr12 97177308 97177346 -24080184 + AT_rich Low_complexity Low_complexity 1 38 0 2 1326 1024 128 0 0 chr12 97177346 97177494 -24080036 - B1_Mus1 SINE Alu 0 148 1 2 1326 24 65 0 16 chr12 97177494 97177518 -24080012 + AT_rich Low_complexity Low_complexity 1 24 0 2 1326 22 80 0 0 chr12 97178290 97178340 -24079190 + AT_rich Low_complexity Low_complexity 1 50 0 2 1326 254 337 45 15 chr12 97178940 97179139 -24078391 + MIR SINE MIR 17 221 -41 2 1326 276 91 30 15 chr12 97179283 97179324 -24078206 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 1326 1085 103 7 0 chr12 97179324 97179470 -24078060 + B1_Mus2 SINE Alu 1 147 0 2 1326 276 91 30 15 chr12 97179470 97179495 -24078035 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2 1326 204 40 0 0 chr12 97179521 97179546 -24077984 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 1326 25 31 0 0 chr12 97179645 97179677 -24077853 + AT_rich Low_complexity Low_complexity 1 32 0 2 1326 565 281 50 14 chr12 97179682 97179823 -24077707 - B1F SINE Alu -2 147 2 2 1326 782 136 13 52 chr12 97179934 97180089 -24077441 - L1_Mus1 LINE L1 -35 6547 6399 2 1326 499 208 0 0 chr12 97180070 97180176 -24077354 - L1_Mur3 LINE L1 -1026 4854 4749 2 1326 33745 77 14 14 chr12 97180172 97186237 -24071293 - L1Md_F2 LINE L1 -12 6570 505 2 1326 4983 204 35 48 chr12 97186266 97186298 -24071232 - L1_Mur3 LINE L1 -1226 4654 4627 2 1326 456 86 0 0 chr12 97186298 97186368 -24071162 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1326 4983 204 35 48 chr12 97186368 97186479 -24071051 - L1_Mur3 LINE L1 -1254 4626 4514 2 1326 1022 84 28 0 chr12 97186479 97186622 -24070908 + B1_Mus1 SINE Alu 2 148 0 2 1326 4983 204 35 48 chr12 97186622 97187858 -24069672 - L1_Mur3 LINE L1 -1367 4513 3292 2 1326 7513 73 7 11 chr12 97187844 97188839 -24068691 - L1Md_F2 LINE L1 -1 6581 5591 2 1326 720 231 16 51 chr12 97188837 97189152 -24068378 - L1_Mur3 LINE L1 -2580 3300 2997 2 1326 842 143 7 0 chr12 97189174 97189321 -24068209 + (TC)n Simple_repeat Simple_repeat 2 149 0 2 1326 2022 170 65 72 chr12 97189322 97189733 -24067797 - L1_Mur3 LINE L1 -2872 3008 2595 2 1326 2875 159 54 131 chr12 97189733 97190078 -24067452 + RMER6C LTR ERVK 1 332 -358 2 1326 557 52 0 13 chr12 97190078 97190156 -24067374 + (GGAGA)n Simple_repeat Simple_repeat 3 79 0 2 1326 2875 159 54 131 chr12 97190156 97190556 -24066974 + RMER6C LTR ERVK 333 688 -2 2 1326 2022 170 65 72 chr12 97190556 97190671 -24066859 - L1_Mur3 LINE L1 -3286 2594 2486 2 1326 3405 270 55 26 chr12 97190688 97191943 -24065587 - L1_Mur3 LINE L1 -6531 1197 65 2 1326 210 150 0 0 chr12 97192908 97192948 -24064582 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1326 276 38 18 54 chr12 97193216 97193272 -24064258 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 2 1326 396 234 12 81 chr12 97193279 97193394 -24064136 - Lx9 LINE L1 -29 7615 7504 2 1326 689 34 11 0 chr12 97193394 97193482 -24064048 + (TC)n Simple_repeat Simple_repeat 1 89 0 2 1326 189 107 0 0 chr12 97193482 97193509 -24064021 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1326 396 234 12 81 chr12 97193509 97193564 -24063966 - Lx9 LINE L1 -141 7503 7457 2 1326 2056 259 15 64 chr12 97193602 97193635 -24063895 - Lx9 LINE L1 -134 7510 7478 2 1326 181 83 56 0 chr12 97193635 97193671 -24063859 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1326 2056 259 15 64 chr12 97193671 97194359 -24063171 - Lx9 LINE L1 -167 7477 6824 2 1326 1274 299 72 35 chr12 97194362 97194931 -24062599 + Lx9 LINE L1 6085 6674 -970 2 1326 399 331 0 16 chr12 97195569 97195692 -24061838 + B3 SINE B2 2 122 -94 2 1326 198 0 0 0 chr12 97195739 97195761 -24061769 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1326 261 0 0 0 chr12 97195786 97195815 -24061715 + (CAATT)n Simple_repeat Simple_repeat 3 31 0 2 1326 262 361 92 0 chr12 97196550 97196669 -24060861 + MLT1A0 LTR MaLR 2 131 -234 2 1326 23 0 0 0 chr12 97196869 97196892 -24060638 + AT_rich Low_complexity Low_complexity 1 23 0 2 1326 796 331 66 18 chr12 97196997 97197332 -24060198 - MTE2b LTR MaLR -2 377 27 2 1326 309 309 30 30 chr12 97197426 97197526 -24060004 - B4A SINE B4 -1 291 192 2 1326 396 0 0 0 chr12 97197595 97197639 -24059891 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2 1326 1677 173 11 77 chr12 97200466 97200842 -24056688 + Lx4B LINE L1 6708 7058 0 2 1326 200 184 0 20 chr12 97201580 97201630 -24055900 + GA-rich Low_complexity Low_complexity 1 49 0 2 1326 257 277 32 108 chr12 97202344 97202372 -24055158 - BC1_Mm scRNA scRNA -51 101 16 2 1326 278 308 0 0 chr12 97202372 97202437 -24055093 - tRNA-Ala-GCY_ tRNA tRNA -1 74 10 2 1326 278 123 18 0 chr12 97203355 97203412 -24054118 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 2 1326 1133 50 0 0 chr12 97203416 97203557 -24053973 - B1_Mus1 SINE Alu -6 142 2 2 1326 532 317 71 12 chr12 97204358 97204527 -24053003 + B4A SINE B4 2 180 -112 2 1326 297 0 0 0 chr12 97204605 97204638 -24052892 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1326 40 73 0 0 chr12 97204781 97204863 -24052667 + AT_rich Low_complexity Low_complexity 1 82 0 2 1326 761 101 8 16 chr12 97206909 97207030 -24050500 + LTRIS2 LTR ERV1 364 483 -81 2 1326 26 0 0 0 chr12 97207680 97207706 -24049824 + AT_rich Low_complexity Low_complexity 1 26 0 2 1326 387 180 29 0 chr12 97207747 97207919 -24049611 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 2 1326 8199 168 22 37 chr12 97209885 97210719 -24046811 + L1_Mur2 LINE L1 3784 4621 -1256 2 1326 198 71 0 0 chr12 97210719 97210747 -24046783 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2 1326 8199 168 22 37 chr12 97210747 97211142 -24046388 + L1_Mur2 LINE L1 4622 4988 -889 2 1326 234 0 0 0 chr12 97211142 97211168 -24046362 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1326 8199 168 22 37 chr12 97211168 97211604 -24045926 + L1_Mur2 LINE L1 4989 5423 -454 2 1326 1508 167 4 4 chr12 97211608 97211873 -24045657 + Lx LINE L1 6385 6649 -5 2 1326 2870 173 80 7 chr12 97212048 97212585 -24044945 - RLTR20A2 LTR ERVK 0 578 3 2 1326 3866 163 66 4 chr12 97212589 97213357 -24044173 - MYSERV16_I-int LTR ERVK -2 2324 1509 2 1326 1517 118 78 0 chr12 97213364 97213634 -24043896 + MYSERV16_I-int LTR ERVK 1210 1500 -826 2 1326 242 29 29 0 chr12 97213645 97213680 -24043850 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1326 1937 203 60 48 chr12 97213793 97214289 -24043241 - MYSERV16_I-int LTR ERVK -1392 934 433 2 1326 33756 17 1 2 chr12 97214289 97218273 -24039257 + L1Md_A LINE L1 1606 5585 -298 2 1326 8458 31 0 0 chr12 97218274 97219269 -24038261 + L1Md_A LINE L1 5587 6581 -1 2 1326 2015 169 73 10 chr12 97219269 97219682 -24037848 - MYSERV16_I-int LTR ERVK -1887 439 1 2 1326 481 203 24 67 chr12 97219682 97219818 -24037712 - RMER3D-int LTR ERVK -1593 1249 1121 2 1326 1506 43 5 0 chr12 97220051 97220236 -24037294 - B2_Mm1t SINE B2 -6 187 2 2 1326 2323 166 184 16 chr12 97220808 97220894 -24036636 - RLTR20A2 LTR ERVK 0 578 492 2 1326 270 0 0 0 chr12 97220894 97220924 -24036606 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1326 2323 166 184 16 chr12 97220924 97221209 -24036321 - RLTR20A2 LTR ERVK -87 491 138 2 1326 495 0 0 0 chr12 97221209 97221264 -24036266 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1326 2323 166 184 16 chr12 97221264 97221386 -24036144 - RLTR20A2 LTR ERVK -441 137 3 2 1326 541 335 41 12 chr12 97221421 97221590 -24035940 - MTE2b LTR MaLR -194 185 12 2 1326 2161 63 0 0 chr12 97221687 97221957 -24035573 + L1Md_F2 LINE L1 5317 5586 -297 2 1326 7601 63 12 3 chr12 97221957 97222939 -24034591 + L1Md_F2 LINE L1 5587 6577 -5 2 1326 1162 82 58 6 chr12 97223353 97223525 -24034005 - B2_Mm2 SINE B2 -14 181 1 2 1326 21 0 0 0 chr12 97225142 97225163 -24032367 + AT_rich Low_complexity Low_complexity 1 21 0 2 1326 1068 82 0 20 chr12 97225403 97225416 -24032114 - B1_Mus1 SINE Alu -1 147 136 2 1326 251 28 0 27 chr12 97225416 97225453 -24032077 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1326 1068 82 0 20 chr12 97225453 97225589 -24031941 - B1_Mus1 SINE Alu -13 135 1 2 1326 195 42 0 0 chr12 97225785 97225809 -24031721 + (TATG)n Simple_repeat Simple_repeat 4 27 0 2 1326 180 400 29 29 chr12 97225878 97225981 -24031549 - MIRb SINE MIR -62 206 104 2 1326 249 145 30 61 chr12 97226207 97226273 -24031257 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 2 1326 234 279 0 93 chr12 97227246 97227321 -24030209 + Charlie13b DNA Charlie 338 405 -107 2 1326 404 150 12 0 chr12 97227434 97227514 -24030016 + CT-rich Low_complexity Low_complexity 2 82 0 2 1326 353 116 14 0 chr12 97227575 97227644 -24029886 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1326 219 36 0 0 chr12 97228444 97228472 -24029058 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1326 410 275 46 12 chr12 97228481 97228654 -24028876 - B3A SINE B2 -16 182 4 2 1326 2976 164 39 19 chr12 97229141 97229712 -24027818 - Lx2B LINE L1 -4 6996 6415 2 1326 672 13 0 0 chr12 97230432 97230509 -24027021 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1326 183 100 0 0 chr12 97230512 97230542 -24026988 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1326 1044 111 0 0 chr12 97230877 97231021 -24026509 - B1_Mus1 SINE Alu 0 148 5 2 1326 873 67 22 0 chr12 97231074 97231208 -24026322 + (TA)n Simple_repeat Simple_repeat 1 137 0 3 1326 584 144 40 0 chr12 97231470 97231643 -24025887 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 3 1326 487 316 40 0 chr12 97233411 97233585 -24023945 + MIR3 SINE MIR 21 201 -7 3 1326 292 294 12 0 chr12 97233669 97233754 -24023776 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 1326 361 372 35 30 chr12 97236033 97236202 -24021328 - MIRb SINE MIR -32 236 67 3 1326 198 208 0 0 chr12 97236616 97236669 -24020861 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1326 2011 118 17 0 chr12 97236710 97237007 -24020523 - Lx3C LINE L1 -555 6421 6120 3 1326 7553 159 34 11 chr12 97237012 97238536 -24018994 - L1_Mur1 LINE L1 -2636 3250 1693 3 1326 40502 16 3 6 chr12 97238526 97245501 -24012029 - L1Md_A LINE L1 0 6582 1 3 1326 2934 166 28 1 chr12 97245505 97246475 -24011055 - L1_Mur1 LINE L1 -4171 1715 713 3 1326 386 178 2 0 chr12 97246607 97246681 -24010849 - L1_Mur1 LINE L1 -6231 753 690 3 1326 30 0 0 0 chr12 97246742 97246772 -24010758 + AT_rich Low_complexity Low_complexity 1 30 0 3 1326 271 372 11 0 chr12 97247205 97247299 -24010231 - PB1D10 SINE Alu -12 105 11 3 1326 220 259 0 53 chr12 97247318 97247375 -24010155 - ID2 SINE ID -29 54 1 3 1326 187 270 13 63 chr12 97248830 97248909 -24008621 - L2a LINE L2 -12 3414 3340 3 1326 387 344 145 42 chr12 97249137 97249544 -24007986 - L2a LINE L2 -382 3037 2589 3 1326 25 51 0 0 chr12 97249591 97249630 -24007900 + AT_rich Low_complexity Low_complexity 1 39 0 3 1326 497 353 65 0 chr12 97249721 97249922 -24007608 - ORR1D2 LTR MaLR -155 215 2 3 1326 180 0 0 0 chr12 97251179 97251199 -24006331 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1326 492 18 0 0 chr12 97251376 97251433 -24006097 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1326 27 0 0 0 chr12 97251966 97251993 -24005537 + AT_rich Low_complexity Low_complexity 1 27 0 3 1326 347 60 20 0 chr12 97252256 97252306 -24005224 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 3 1326 2037 234 72 20 chr12 97252314 97252854 -24004676 - Lx4B LINE L1 -1 7057 6490 3 1326 906 76 0 0 chr12 97253149 97253268 -24004262 + B1_Mus1 SINE Alu 30 148 0 3 1326 191 122 53 26 chr12 97253268 97253344 -24004186 + A-rich Low_complexity Low_complexity 2 79 0 3 1326 236 175 286 0 chr12 97253603 97253666 -24003864 - RLTR12B LTR ERVK -434 94 14 3 165 36488 28 0 8 chr12 97253678 97258683 -23998847 + L1Md_T LINE L1 631 5586 -297 3 1327 8153 42 1 0 chr12 97258684 97259676 -23997854 + L1Md_T LINE L1 5588 6580 -2 3 1327 216 67 0 0 chr12 97259704 97259734 -23997796 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 3 1327 3851 140 76 1 chr12 97259734 97260393 -23997137 - Lx LINE L1 -9 6645 5938 3 1327 11648 174 111 25 chr12 97260393 97262955 -23994575 - L1_Mm LINE L1 -826 5057 2276 3 1327 28 107 0 0 chr12 97263149 97263261 -23994269 + AT_rich Low_complexity Low_complexity 1 112 0 3 1327 22 0 0 0 chr12 97263400 97263422 -23994108 + AT_rich Low_complexity Low_complexity 1 22 0 3 1327 195 204 0 0 chr12 97264158 97264202 -23993328 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1327 255 156 178 0 chr12 97264339 97264411 -23993119 - Lx LINE L1 -206 6432 6350 3 1327 364 326 29 36 chr12 97264663 97264803 -23992727 + ID_B1 SINE B4 6 144 -80 3 1327 248 281 29 77 chr12 97264758 97264862 -23992668 + PB1D9 SINE Alu 22 120 0 3 1327 1583 166 26 4 chr12 97264862 97265134 -23992396 + Lx2B LINE L1 6591 6868 -132 3 1327 2091 106 13 10 chr12 97265136 97265450 -23992080 + L1_Mus4 LINE L1 6313 6627 -9 3 1327 28 0 0 0 chr12 97265475 97265503 -23992027 + AT_rich Low_complexity Low_complexity 1 28 0 3 1327 975 254 5 0 chr12 97265560 97265769 -23991761 - URR1B DNA MER1_type -15 210 1 3 1327 706 258 76 9 chr12 97265779 97265990 -23991540 - MTC LTR MaLR 0 421 197 3 1327 813 102 0 21 chr12 97266015 97266156 -23991374 - Lx LINE L1 0 6654 6517 3 1327 733 125 97 32 chr12 97266158 97266282 -23991248 + Lx LINE L1 6355 6486 -168 3 1327 6087 90 14 9 chr12 97266334 97267201 -23990329 - L1_Mus3 LINE L1 -1 6637 5767 3 1327 4703 117 1 17 chr12 97267202 97267918 -23989612 + L1_Mus3 LINE L1 4952 5656 -227 3 1327 21 57 0 0 chr12 97270432 97270467 -23987063 + AT_rich Low_complexity Low_complexity 1 35 0 3 1327 280 299 61 20 chr12 97271746 97271893 -23985637 + L1MB2 LINE L1 5861 6013 -158 3 1327 216 185 0 0 chr12 97272170 97272224 -23985306 + (TCTG)n Simple_repeat Simple_repeat 3 56 0 3 1327 221 98 0 24 chr12 97272252 97272294 -23985236 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1327 536 168 34 35 chr12 97272294 97272468 -23985062 + ORR1B1 LTR MaLR 41 144 -250 3 1327 473 16 33 0 chr12 97272468 97272529 -23985001 + (TATG)n Simple_repeat Simple_repeat 2 64 0 3 1327 229 284 128 7 chr12 97272547 97272696 -23984834 - L1ME3A LINE L1 -205 5968 5802 3 1327 2325 198 25 39 chr12 97272752 97273279 -23984251 - ORR1A4-int LTR MaLR -1253 539 1 3 1327 369 0 0 0 chr12 97273279 97273320 -23984210 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 3 1327 2325 202 32 8 chr12 97273320 97273585 -23983945 - ORR1A4-int LTR MaLR -1696 267 2 3 1327 2185 157 65 41 chr12 97273585 97273993 -23983537 - MT2B LTR ERVL -183 418 1 3 1327 221 0 35 0 chr12 97275903 97275932 -23981598 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1327 347 200 30 10 chr12 97276590 97276691 -23980839 - Lx2B LINE L1 -4 6996 6894 3 1327 557 205 51 8 chr12 97277042 97277160 -23980370 + ETnERV2-int LTR ERVK 7070 7192 -214 3 1327 317 293 21 21 chr12 97277746 97277889 -23979641 + RMER16-int LTR ERVK 187 329 -6915 3 1327 1936 171 148 35 chr12 97278076 97278584 -23978946 + RMER16-int LTR ERVK 255 819 -4587 3 1327 637 175 25 0 chr12 97278589 97278709 -23978821 + RMER16-int LTR ERVK 938 1060 -5077 3 1327 1070 233 70 34 chr12 97278722 97279020 -23978510 + ETnERV2-int LTR ERVK 2454 2762 -4644 3 1327 8200 139 42 27 chr12 97279034 97279308 -23978222 + ETnERV2-int LTR ERVK 2935 3221 -4185 3 1327 498 33 0 0 chr12 97279308 97279368 -23978162 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 3 1327 441 0 30 30 chr12 97279371 97279437 -23978093 + (TTTA)n Simple_repeat Simple_repeat 2 67 0 3 1327 1119 71 0 0 chr12 97279439 97279579 -23977951 - B1_Mus2 SINE Alu -6 141 2 3 1327 8200 139 42 27 chr12 97279579 97280351 -23977179 + ETnERV2-int LTR ERVK 3222 4013 -3393 3 1327 2562 63 97 0 chr12 97280351 97280701 -23976829 + L1Md_F2 LINE L1 6199 6582 0 3 1327 8200 139 42 27 chr12 97280701 97281201 -23976329 + ETnERV2-int LTR ERVK 4014 4510 -2896 3 1327 380 177 12 25 chr12 97281204 97281285 -23976245 + ETnERV3-int LTR ERVK 3141 3220 -2186 3 1327 216 0 0 0 chr12 97281290 97281314 -23976216 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 3 1327 4760 178 61 53 chr12 97281314 97282545 -23974985 + ETnERV3-int LTR ERVK 4148 5388 -420 3 1327 1134 86 41 28 chr12 97282558 97282765 -23974765 + RLTR13D5 LTR ERVK 285 509 -524 3 1327 269 272 0 0 chr12 97282796 97282877 -23974653 + RNERVK23-int LTR ERVK 6808 6888 -1329 3 1327 279 299 0 0 chr12 97283009 97283116 -23974414 + RNERVK23-int LTR ERVK 7642 7748 -469 3 1327 3621 139 17 22 chr12 97283225 97283808 -23973722 + ETnERV3-int LTR ERVK 6494 7073 -333 3 1327 455 240 58 0 chr12 97283987 97284091 -23973439 + ETnERV3-int LTR ERVK 7083 7192 -214 3 1327 2688 223 80 19 chr12 97285947 97286773 -23970757 - Lx2B LINE L1 -1 7057 6100 3 1327 532 209 20 80 chr12 97286773 97286924 -23970606 + ORR1A2 LTR MaLR 1 142 -185 3 1327 2043 134 0 7 chr12 97286812 97287120 -23970410 - MT2B LTR ERVL -294 307 2 3 1327 2777 154 25 0 chr12 97287125 97287713 -23969817 - Lx2B LINE L1 -903 6097 5496 3 1327 2565 141 38 0 chr12 97287713 97288111 -23969419 + MTC LTR MaLR 9 421 0 3 1327 28906 110 13 29 chr12 97288574 97294544 -23962986 - L1_Mus1 LINE L1 -1 6566 725 3 1327 401 260 16 8 chr12 97294552 97294680 -23962850 - L1_Mus1 LINE L1 -5813 803 675 3 1327 405 258 17 75 chr12 97294711 97294969 -23962561 - L1VL1 LINE L1 -5941 477 253 3 1327 2917 72 15 8 chr12 97295269 97295662 -23961868 - MTA_Mm LTR MaLR 0 396 1 3 1327 301 91 15 29 chr12 97296014 97296082 -23961448 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 3 1327 22 35 0 0 chr12 97296298 97296327 -23961203 + AT_rich Low_complexity Low_complexity 1 29 0 3 1327 1118 330 24 44 chr12 97296824 97297277 -23960253 - MT2A LTR ERVL -89 444 1 3 1327 294 376 0 35 chr12 97298030 97298143 -23959387 + RSINE1 SINE B4 14 122 -43 3 1327 195 69 0 0 chr12 97298159 97298188 -23959342 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1327 269 318 108 36 chr12 97299112 97299223 -23958307 - B4 SINE B4 -14 278 160 3 1327 26 82 0 0 chr12 97299580 97299641 -23957889 + AT_rich Low_complexity Low_complexity 1 61 0 3 1327 225 159 0 64 chr12 97300426 97300473 -23957057 - MIR3 SINE MIR -20 188 145 3 1327 6985 64 10 12 chr12 97300887 97301940 -23955590 - L1_Mus1 LINE L1 0 6567 5507 3 1327 1376 114 4 0 chr12 97301931 97302159 -23955371 + L1_Mm LINE L1 5174 5402 -481 3 1327 427 323 83 24 chr12 97302173 97302226 -23955304 - B4A SINE B4 -6 286 225 3 1327 346 65 16 16 chr12 97302226 97302289 -23955241 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 1327 1059 95 0 0 chr12 97302289 97302426 -23955104 - B1_Mm SINE Alu -8 139 3 3 1327 427 323 83 24 chr12 97302426 97302539 -23954991 - B4A SINE B4 -68 224 110 3 1327 657 0 0 0 chr12 97302708 97302781 -23954749 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 3 1327 533 303 73 73 chr12 97302974 97303306 -23954224 - Lx8 LINE L1 -347 7126 6793 3 1327 1509 57 0 0 chr12 97303306 97303498 -23954032 - L1_Mus2 LINE L1 0 6566 6375 3 1327 533 303 73 73 chr12 97303498 97303646 -23953884 - Lx8 LINE L1 -681 6792 6646 3 1327 821 295 48 8 chr12 97303706 97304082 -23953448 - Lx8 LINE L1 -1098 5902 5512 3 1327 262 310 11 45 chr12 97304091 97304179 -23953351 - B4A SINE B4 -206 86 2 3 1327 2705 163 133 5 chr12 97305084 97305663 -23951867 + RMER6C LTR ERVK 38 690 0 3 1327 690 184 0 0 chr12 97306123 97306302 -23951228 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1327 958 264 24 0 chr12 97306380 97306630 -23950900 - Lx9 LINE L1 -345 7299 7044 3 1327 232 204 0 0 chr12 97306653 97306702 -23950828 - ORR1D1 LTR MaLR 0 370 322 3 1327 4160 107 13 13 chr12 97306727 97307344 -23950186 - Lx3_Mus LINE L1 0 7009 6393 3 1327 1006 130 0 0 chr12 97307360 97307506 -23950024 - B1_Mus1 SINE Alu -2 146 1 3 1327 254 275 13 53 chr12 97307506 97307555 -23949975 - ORR1B1-int LTR MaLR -863 646 604 3 1327 223 365 0 50 chr12 97307552 97307566 -23949964 - RSINE1 SINE B4 -69 96 40 3 1327 514 150 0 0 chr12 97307566 97307646 -23949884 - B2_Mm2 SINE B2 -111 84 5 3 1327 3932 88 77 18 chr12 97307653 97308304 -23949226 - Lx3_Mus LINE L1 -608 6401 5713 3 1327 1409 297 33 18 chr12 97308786 97309277 -23948253 - Lx6 LINE L1 -2 7458 6961 3 1327 1165 32 19 13 chr12 97309322 97309479 -23948051 + (GGGAGA)n Simple_repeat Simple_repeat 1 158 0 3 1327 515 277 89 34 chr12 97309481 97309627 -23947903 - ORR1D1 LTR MaLR -220 154 1 3 1327 1073 92 12 0 chr12 97309665 97309828 -23947702 + (TCTCCC)n Simple_repeat Simple_repeat 3 167 0 3 1327 360 0 0 0 chr12 97309828 97309867 -23947663 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1327 1896 41 4 16 chr12 97310185 97310198 -23947332 + L1Md_F2 LINE L1 6227 6236 -346 4 1327 753 19 9 0 chr12 97310198 97310303 -23947227 - L1Md_F2 LINE L1 -3 6579 6474 4 1327 1896 41 4 16 chr12 97310303 97310537 -23946993 + L1Md_F2 LINE L1 6237 6471 -111 4 1327 210 37 0 0 chr12 97310967 97310994 -23946536 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 4 1327 489 81 22 22 chr12 97311011 97311100 -23946430 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 4 1327 234 0 0 0 chr12 97311119 97311145 -23946385 + (TGAG)n Simple_repeat Simple_repeat 1 26 0 4 1327 285 342 0 49 chr12 97311147 97311310 -23946220 - RSINE1 SINE B4 0 165 11 4 1327 222 62 0 0 chr12 97311829 97311861 -23945669 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1327 790 180 47 18 chr12 97311861 97312031 -23945499 - Lx3B LINE L1 -5 6968 6794 4 1327 22 0 0 0 chr12 97312051 97312073 -23945457 + AT_rich Low_complexity Low_complexity 1 22 0 4 1327 189 0 0 0 chr12 97312493 97312514 -23945016 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1327 192 77 0 0 chr12 97312609 97312635 -23944895 + (CAG)n Simple_repeat Simple_repeat 1 26 0 4 1327 21 0 0 0 chr12 97312709 97312730 -23944800 + AT_rich Low_complexity Low_complexity 1 21 0 4 1327 3045 78 2 5 chr12 97312763 97313164 -23944366 + MTB LTR MaLR 1 400 0 4 1327 423 149 19 9 chr12 97314497 97314605 -23942925 + (TG)n Simple_repeat Simple_repeat 1 109 0 4 1327 285 125 0 0 chr12 97314619 97314675 -23942855 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1327 492 18 0 0 chr12 97314678 97314735 -23942795 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1327 192 77 0 0 chr12 97315071 97315097 -23942433 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1327 251 278 0 0 chr12 97315168 97315222 -23942308 - B3A SINE B2 -139 59 6 4 1327 251 293 35 47 chr12 97315275 97315361 -23942169 - Charlie1 DNA MER1_type -5 2776 2692 4 1327 39413 5 0 1 chr12 97315905 97322528 -23935002 - L1Md_A LINE L1 0 6582 1 4 1327 382 318 75 84 chr12 97322535 97322701 -23934829 - MER45B DNA Tip100 -199 841 689 4 1327 450 0 0 0 chr12 97322701 97322751 -23934779 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1327 382 318 75 84 chr12 97322751 97322999 -23934531 - MER45B DNA Tip100 -352 688 432 4 1327 261 245 63 132 chr12 97323204 97323378 -23934152 - Charlie1 DNA MER1_type -766 2015 1854 4 1327 2980 158 9 17 chr12 97324312 97324841 -23932689 + Lx3B LINE L1 6448 6972 -1 4 1327 528 81 0 0 chr12 97325014 97325088 -23932442 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1327 3483 93 2 6 chr12 97325187 97325664 -23931866 - MT2C_Mm LTR ERVL 0 475 1 4 1327 2340 108 3 6 chr12 97325908 97326253 -23931277 + Lx3_Mus LINE L1 6666 7009 0 4 1327 497 321 43 7 chr12 97326735 97326876 -23930654 + RSINE1 SINE B4 3 148 -17 4 1327 7800 40 9 2 chr12 97327282 97328329 -23929201 - L1Md_F2 LINE L1 -12 6570 5518 4 1327 752 319 86 15 chr12 97328999 97329266 -23928264 + B4A SINE B4 1 286 -6 4 1327 222 160 0 0 chr12 97330514 97330564 -23926966 + (TCTCTG)n Simple_repeat Simple_repeat 2 51 0 4 1327 24 0 0 0 chr12 97332055 97332079 -23925451 + AT_rich Low_complexity Low_complexity 1 24 0 4 1327 29 28 0 0 chr12 97332172 97332208 -23925322 + AT_rich Low_complexity Low_complexity 1 36 0 4 1327 458 284 30 30 chr12 97332276 97332493 -23925037 + B3A SINE B2 4 213 -3 4 1327 6238 84 23 2 chr12 97333114 97334010 -23923520 - L1_Mus3 LINE L1 -7 6631 5717 4 1327 1470 171 164 9 chr12 97334171 97334489 -23923041 - ORR1B2 LTR MaLR 0 367 1 4 1327 263 285 10 118 chr12 97334651 97334678 -23922852 - Lx4B LINE L1 -1 7057 7038 4 1327 207 0 0 0 chr12 97334678 97334701 -23922829 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4 1327 263 285 10 118 chr12 97334701 97334876 -23922654 - Lx4B LINE L1 -21 7037 6877 4 1327 2983 184 87 1 chr12 97334930 97335576 -23921954 - Lx4B LINE L1 -298 6760 6060 4 1327 1702 168 51 0 chr12 97335613 97335965 -23921565 + Lx4B LINE L1 5816 6185 -873 4 1327 21 0 0 0 chr12 97337037 97337058 -23920472 + AT_rich Low_complexity Low_complexity 1 21 0 4 1327 21 0 0 0 chr12 97337664 97337685 -23919845 + AT_rich Low_complexity Low_complexity 1 21 0 4 1327 1600 248 90 25 chr12 97337927 97338448 -23919082 - Lx7 LINE L1 -264 7432 6878 4 1327 418 271 48 42 chr12 97339772 97339961 -23917569 + RCHARR1 DNA MER1_type 674 863 -111 4 1327 481 307 34 6 chr12 97339975 97340152 -23917378 - B3A SINE B2 -16 182 1 4 1327 21 57 0 0 chr12 97340545 97340580 -23916950 + AT_rich Low_complexity Low_complexity 1 35 0 4 1327 333 0 0 0 chr12 97342660 97342697 -23914833 + (TTA)n Simple_repeat Simple_repeat 3 39 0 4 1327 279 316 117 43 chr12 97343110 97343272 -23914258 + RMER15 LTR ERVL 366 539 -36 4 1327 634 249 110 45 chr12 97343330 97343439 -23914091 - MTD LTR MaLR -14 405 297 4 1327 6554 121 34 7 chr12 97343439 97344477 -23913053 + Lx3A LINE L1 5908 6973 -8 4 1327 634 340 106 103 chr12 97344477 97344762 -23912768 - MTD LTR MaLR -123 296 18 4 1327 626 270 104 87 chr12 97344781 97345183 -23912347 - MTD-int LTR MaLR -4 1254 846 4 1327 7931 35 0 0 chr12 97345190 97346336 -23911194 - L1Md_F2 LINE L1 -12 6570 5424 4 1327 685 290 130 46 chr12 97346382 97346826 -23910704 - MTD-int LTR MaLR -713 545 2 4 1327 292 352 40 16 chr12 97346874 97346998 -23910532 - MTD LTR MaLR -100 319 193 4 1327 254 246 0 0 chr12 97346986 97347058 -23910472 - MTD LTR MaLR -345 74 5 4 1327 659 148 11 17 chr12 97347760 97347939 -23909591 + CT-rich Low_complexity Low_complexity 2 179 0 4 1327 21 36 0 0 chr12 97348248 97348276 -23909254 + AT_rich Low_complexity Low_complexity 1 28 0 4 1327 243 188 0 0 chr12 97348279 97348327 -23909203 + (TATG)n Simple_repeat Simple_repeat 1 48 0 4 1327 3330 40 2 0 chr12 97348327 97348722 -23908808 + MTA_Mm LTR MaLR 1 396 0 4 1327 8957 46 2 1 chr12 97348722 97349819 -23907711 + MTA_Mm-int LTR MaLR 1 1098 0 4 1327 3350 31 10 0 chr12 97349819 97350211 -23907319 + MTA_Mm LTR MaLR 1 396 0 4 1327 405 0 0 0 chr12 97350222 97350267 -23907263 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1327 508 189 29 36 chr12 97351017 97351154 -23906376 + Lx6 LINE L1 6792 6927 -533 4 1327 3666 94 19 4 chr12 97351788 97352309 -23905221 + L1_Mus1 LINE L1 6039 6567 0 4 1327 308 243 215 23 chr12 97354672 97354871 -23902659 + ORR1C2 LTR MaLR 1 259 -115 4 1327 215 0 0 159 chr12 97354871 97354978 -23902552 + (CTCTG)n Simple_repeat Simple_repeat 5 94 0 4 1327 861 229 69 18 chr12 97354978 97355196 -23902334 + ORR1C2 LTR MaLR 156 384 0 4 1327 495 0 0 0 chr12 97355377 97355432 -23902098 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1327 270 0 0 0 chr12 97355432 97355461 -23902069 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1327 203 0 0 36 chr12 97355568 97355596 -23901934 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1327 417 298 104 72 chr12 97355631 97356137 -23901393 + L1MA4 LINE L1 5221 5743 -137 4 1327 276 30 0 0 chr12 97356137 97356170 -23901360 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 4 1327 417 254 50 88 chr12 97356170 97356321 -23901209 + L1MA4 LINE L1 5744 5932 -368 4 1327 525 276 129 48 chr12 97356395 97356735 -23900795 - RMER20B LTR ERVK -37 479 127 4 1327 2637 308 17 28 chr12 97356887 97357905 -23899625 - MERVK26-int LTR ERVK 0 6919 5913 4 1327 2751 281 55 21 chr12 97357904 97358800 -23898730 - MERVK26-int LTR ERVK -2540 4379 3454 4 1327 573 88 0 0 chr12 97358894 97358974 -23898556 + (TTTTC)n Simple_repeat Simple_repeat 5 84 0 4 1327 1151 112 6 0 chr12 97358974 97359153 -23898377 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 4 1327 508 278 121 66 chr12 97359516 97359960 -23897570 - RMER20B LTR ERVK -5 511 57 4 1327 417 54 0 0 chr12 97359972 97360028 -23897502 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1327 22 88 0 0 chr12 97360290 97360347 -23897183 + AT_rich Low_complexity Low_complexity 1 57 0 4 1327 247 80 39 20 chr12 97360455 97360506 -23897024 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 4 1327 558 0 0 0 chr12 97360899 97360961 -23896569 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1327 459 0 0 0 chr12 97360962 97361013 -23896517 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 4 1327 478 361 128 18 chr12 97361023 97361310 -23896220 - Lx8 LINE L1 -146 7327 7004 4 1327 1153 101 0 11 chr12 97361310 97361491 -23896039 + (TCC)n Simple_repeat Simple_repeat 2 180 0 4 1327 478 361 128 18 chr12 97361491 97361539 -23895991 - Lx8 LINE L1 -470 7003 6955 4 1327 641 73 0 10 chr12 97362294 97362391 -23895139 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 4 1327 1025 94 7 0 chr12 97363854 97363992 -23893538 + B1_Mm SINE Alu 2 140 -7 4 1327 611 13 13 0 chr12 97363998 97364074 -23893456 + (CAAAA)n Simple_repeat Simple_repeat 4 80 0 4 1327 452 94 50 50 chr12 97364221 97364401 -23893129 + A-rich Low_complexity Low_complexity 1 180 0 4 1327 474 18 0 0 chr12 97364870 97364925 -23892605 + (CAAAC)n Simple_repeat Simple_repeat 2 56 0 4 1327 627 195 0 0 chr12 97366117 97366245 -23891285 + (CATA)n Simple_repeat Simple_repeat 1 128 0 4 1327 534 31 0 0 chr12 97367166 97367230 -23890300 + (TTCTC)n Simple_repeat Simple_repeat 1 64 0 4 1327 1149 20 13 7 chr12 97367231 97367380 -23890150 + (TCTCCC)n Simple_repeat Simple_repeat 3 152 0 4 1327 231 214 0 18 chr12 97367380 97367437 -23890093 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1327 287 290 100 88 chr12 97370317 97370679 -23886851 - ORR1E LTR MaLR -5 369 4 4 1327 351 0 0 0 chr12 97371155 97371194 -23886336 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1327 342 0 0 0 chr12 97371194 97371231 -23886299 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1327 33 0 0 0 chr12 97371362 97371395 -23886135 + AT_rich Low_complexity Low_complexity 1 33 0 4 1327 194 116 23 0 chr12 97372241 97372284 -23885246 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1327 1301 259 36 9 chr12 97372406 97372741 -23884789 + ORR1E LTR MaLR 1 344 -15 4 1327 1003 241 116 49 chr12 97372902 97373600 -23883930 - Lx7 LINE L1 0 7696 6873 4 1327 196 414 18 0 chr12 97373794 97373905 -23883625 + L2 LINE L2 2772 2884 -535 4 1327 1935 151 102 3 chr12 97374063 97374269 -23883261 + BGLII_Mus LTR ERVK 1 210 -212 4 1327 447 19 0 0 chr12 97374269 97374321 -23883209 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1327 1935 151 102 3 chr12 97374321 97374498 -23883032 + BGLII_Mus LTR ERVK 211 421 -1 4 1327 331 286 3 3 chr12 97375166 97375262 -23882268 + B3A SINE B2 91 186 -30 4 1327 23 33 0 0 chr12 97375552 97375582 -23881948 + AT_rich Low_complexity Low_complexity 1 30 0 4 1327 250 289 63 38 chr12 97375854 97376091 -23881439 - L1MA4 LINE L1 -376 5924 5682 4 1327 2523 26 2 265 chr12 97376346 97376875 -23880655 - RLTR10 LTR ERVK 0 390 1 4 1327 8349 20 0 6 chr12 97376877 97377878 -23879652 - RLTR10-int LTR ERVK -3 1984 990 4 1327 324 232 62 39 chr12 97377960 97378090 -23879440 - RLTR10-int LTR ERVK -5987 1594 1462 4 1327 7793 53 1 8 chr12 97378154 97379180 -23878350 - RLTR10-int LTR ERVK -989 998 3 4 1327 2315 26 2 271 chr12 97379182 97379709 -23877821 - RLTR10 LTR ERVK -5 385 1 4 1327 232 214 18 18 chr12 97379806 97379863 -23877667 - MER58D DNA MER1_type -5 381 325 4 1327 263 270 54 33 chr12 97380734 97380826 -23876704 - MLT2C1 LTR ERVL -48 515 422 5 1327 297 128 0 0 chr12 97381177 97381224 -23876306 + (A)n Simple_repeat Simple_repeat 1 47 0 5 1327 208 245 20 0 chr12 97381446 97381495 -23876035 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1327 513 315 0 14 chr12 97381574 97381719 -23875811 - B4A SINE B4 -131 161 19 5 1327 297 400 30 0 chr12 97381770 97381935 -23875595 + MLT1H-int LTR MaLR 1240 1409 0 5 1327 313 191 73 0 chr12 97383276 97383344 -23874186 + MT2A LTR ERVL 1 73 -460 5 1327 656 145 8 0 chr12 97383347 97383464 -23874066 + CT-rich Low_complexity Low_complexity 2 119 0 5 1327 202 42 0 0 chr12 97383464 97383488 -23874042 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1327 1184 81 12 0 chr12 97383493 97383666 -23873864 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 5 1327 476 142 3 86 chr12 97383669 97383796 -23873734 - Lx LINE L1 -25 6629 6529 5 1327 1124 263 34 142 chr12 97383821 97384207 -23873323 + MT2A LTR ERVL 94 437 -96 5 1327 208 104 62 0 chr12 97384208 97384256 -23873274 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1327 234 119 16 48 chr12 97384277 97384339 -23873191 + (TAA)n Simple_repeat Simple_repeat 3 62 0 5 1327 580 307 40 6 chr12 97385027 97385145 -23872385 - Lx6 LINE L1 -19 7441 7324 5 1327 351 0 0 0 chr12 97385145 97385184 -23872346 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1327 580 307 40 6 chr12 97385184 97385242 -23872288 - Lx6 LINE L1 -137 7323 7259 5 1327 3021 252 42 4 chr12 97385258 97385498 -23872032 - Lx6 LINE L1 -332 7128 6880 5 1327 378 0 0 0 chr12 97385498 97385540 -23871990 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1327 3021 252 42 4 chr12 97385540 97386100 -23871430 - Lx6 LINE L1 -581 6879 6298 5 165 2231 271 80 75 chr12 97386101 97386955 -23870575 + RMER13A LTR ERVK 3 860 0 5 1328 1876 222 45 37 chr12 97386955 97387928 -23869602 - Lx6 LINE L1 -1383 6313 5278 5 1328 225 0 0 0 chr12 97388242 97388267 -23869263 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1328 233 233 16 62 chr12 97388595 97388659 -23868871 + ID4_ SINE ID 4 64 -19 5 1328 248 0 31 0 chr12 97388691 97388723 -23868807 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1328 6926 110 58 24 chr12 97388736 97389137 -23868393 + L1_Mus3 LINE L1 5276 5677 -206 5 1328 288 0 0 0 chr12 97389137 97389169 -23868361 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 5 1328 1052 96 0 0 chr12 97389169 97389305 -23868225 - B1_Mm SINE Alu -11 136 1 5 1328 6926 88 45 4 chr12 97389305 97390237 -23867293 + L1_Mus3 LINE L1 5678 6637 -1 5 1328 242 308 128 32 chr12 97390625 97390719 -23866811 - B1F SINE Alu -17 132 30 5 1328 214 346 94 36 chr12 97392956 97393094 -23864436 + B1F SINE Alu 1 146 -3 5 1328 2039 191 11 35 chr12 97393574 97394009 -23863521 - Lx LINE L1 -12 6642 6218 5 1328 2171 144 3 3 chr12 97394009 97394352 -23863178 + L1_Mm LINE L1 5452 5795 -88 5 1328 313 314 24 16 chr12 97394411 97394537 -23862993 + Lx8 LINE L1 6667 6793 -680 5 1328 542 323 39 24 chr12 97394543 97394554 -23862976 - B3 SINE B2 -5 211 202 5 1328 378 0 0 0 chr12 97394554 97394596 -23862934 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 1328 542 323 39 24 chr12 97394596 97394790 -23862740 - B3 SINE B2 -15 201 3 5 1328 292 398 45 0 chr12 97394994 97395170 -23862360 + Lx8 LINE L1 7089 7272 -201 5 1328 2295 182 35 2 chr12 97396071 97396505 -23861025 - Lx2 LINE L1 -3 6994 6547 5 1328 308 372 6 24 chr12 97396622 97396790 -23860740 + RSINE1 SINE B4 1 165 0 5 1328 24 0 0 0 chr12 97396807 97396831 -23860699 + AT_rich Low_complexity Low_complexity 1 24 0 5 1328 21 71 0 0 chr12 97397554 97397596 -23859934 + AT_rich Low_complexity Low_complexity 1 42 0 5 1328 300 339 23 76 chr12 97397863 97397974 -23859556 - B4 SINE B4 -87 205 99 5 1328 1358 24 123 0 chr12 97397974 97398144 -23859386 + B2_Mm1a SINE B2 1 191 -2 5 1328 300 339 23 76 chr12 97398144 97398163 -23859367 - B4 SINE B4 -194 98 82 5 1328 503 105 11 0 chr12 97398198 97398293 -23859237 - Lx4A LINE L1 -1 7057 6962 5 1328 333 159 0 0 chr12 97398293 97398362 -23859168 - L1_Mur2 LINE L1 -551 5326 5258 5 1328 2594 98 65 2 chr12 97398362 97398759 -23858771 + BGLII_Mus LTR ERVK 1 422 0 5 1328 5909 205 89 90 chr12 97399146 97400617 -23856913 + RMER3D-int LTR ERVK 652 2119 -723 5 1328 1062 80 0 0 chr12 97400617 97400754 -23856776 + B1_Mm SINE Alu 1 137 -10 5 1328 195 42 0 0 chr12 97400754 97400778 -23856752 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1328 5909 205 89 90 chr12 97400778 97401497 -23856033 + RMER3D-int LTR ERVK 2120 2840 -2 5 1328 330 162 29 0 chr12 97401498 97401566 -23855964 + BGLII_Mus LTR ERVK 1 70 -352 5 1328 21 0 0 0 chr12 97401711 97401732 -23855798 + AT_rich Low_complexity Low_complexity 1 21 0 5 1328 275 293 13 26 chr12 97402291 97402368 -23855162 + MTD LTR MaLR 18 93 -326 5 1328 2244 16 0 0 chr12 97402370 97402626 -23854904 + L1Md_T LINE L1 6173 6428 -154 5 1328 244 314 0 67 chr12 97402643 97402718 -23854812 + MTD LTR MaLR 52 121 -258 5 1328 779 191 169 0 chr12 97402805 97402988 -23854542 - B3 SINE B2 -2 214 1 5 1328 233 393 0 43 chr12 97403136 97403229 -23854301 + B1_Mur2 SINE Alu 9 97 -52 5 1328 450 36 0 0 chr12 97403399 97403455 -23854075 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1328 377 266 110 77 chr12 97403484 97403794 -23853736 - L1MC LINE L1 -716 5617 5298 5 1328 495 48 0 0 chr12 97404115 97404177 -23853353 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1328 337 392 48 0 chr12 97404195 97404320 -23853210 - RSINE1 SINE B4 -32 133 3 5 1328 216 0 0 0 chr12 97404599 97404623 -23852907 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1328 206 174 0 21 chr12 97405368 97405415 -23852115 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1328 31 0 0 0 chr12 97406523 97406554 -23850976 + AT_rich Low_complexity Low_complexity 1 31 0 5 1328 429 88 38 0 chr12 97408277 97408357 -23849173 + (TA)n Simple_repeat Simple_repeat 1 83 0 5 1328 261 57 0 0 chr12 97408556 97408591 -23848939 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1328 221 224 0 20 chr12 97408591 97408641 -23848889 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1328 680 162 7 0 chr12 97408641 97408789 -23848741 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 5 1328 675 308 56 0 chr12 97410325 97410520 -23847010 - ID_B1 SINE B4 -7 217 12 5 1328 459 52 0 0 chr12 97410609 97410667 -23846863 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1328 240 283 54 11 chr12 97410746 97410839 -23846691 - B4A SINE B4 -10 282 186 5 1328 286 258 11 21 chr12 97410958 97411053 -23846477 - Lx9 LINE L1 -10 7634 7541 5 1328 492 277 51 7 chr12 97411073 97411211 -23846319 + MT2A LTR ERVL 1 144 -389 5 1328 4401 212 64 6 chr12 97411366 97413082 -23844448 - Lx5 LINE L1 -230 6820 4971 5 1328 1013 239 73 4 chr12 97413083 97413398 -23844132 - Lx3C LINE L1 -5 6995 6630 5 1328 720 161 42 0 chr12 97413400 97413543 -23843987 - Lx5 LINE L1 -909 4968 4820 5 1328 32576 89 13 7 chr12 97413531 97419446 -23838084 - L1Md_F2 LINE L1 -2 6580 218 5 1328 366 156 0 0 chr12 97419449 97419513 -23838017 + T-rich Low_complexity Low_complexity 1 64 0 5 1328 1671 173 3 12 chr12 97419513 97419846 -23837684 - Lx5 LINE L1 -1014 4863 4534 5 1328 1472 160 4 8 chr12 97419840 97420092 -23837438 + L1_Mur2 LINE L1 3586 3836 -2041 5 1328 429 129 0 0 chr12 97420108 97420178 -23837352 + (TATG)n Simple_repeat Simple_repeat 2 71 0 5 1328 302 224 29 15 chr12 97420179 97420247 -23837283 - HAL1-3A_ME LINE L1 -846 2012 1944 5 1328 21 57 0 0 chr12 97420266 97420301 -23837229 + AT_rich Low_complexity Low_complexity 1 35 0 5 1328 231 143 0 0 chr12 97420468 97420510 -23837020 - MT2A LTR ERVL -3 530 489 5 1328 501 47 0 0 chr12 97420510 97420574 -23836956 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1328 2193 126 24 42 chr12 97420580 97420961 -23836569 - L1_Mus4 LINE L1 -17 6619 6246 5 1328 198 0 0 0 chr12 97420961 97420983 -23836547 + (TC)n Simple_repeat Simple_repeat 2 23 0 5 1328 801 146 0 0 chr12 97421048 97421185 -23836345 + (TA)n Simple_repeat Simple_repeat 1 137 0 5 1328 204 55 0 53 chr12 97421186 97421224 -23836306 + (GAGAA)n Simple_repeat Simple_repeat 5 40 0 5 1328 21 57 0 0 chr12 97421633 97421668 -23835862 + AT_rich Low_complexity Low_complexity 1 35 0 5 1328 315 381 26 6 chr12 97422431 97422587 -23834943 + MIR SINE MIR 15 173 -89 5 1328 458 275 26 87 chr12 97422593 97422972 -23834558 - L1MC3 LINE L1 -8 7777 7422 5 1328 253 289 0 11 chr12 97423292 97423383 -23834147 + Lx2B LINE L1 6853 6942 -58 5 1328 22 56 0 0 chr12 97423388 97423424 -23834106 + AT_rich Low_complexity Low_complexity 1 36 0 5 1328 252 212 12 0 chr12 97423613 97423657 -23833873 - Lx9 LINE L1 -82 7562 7519 5 1328 351 0 0 0 chr12 97423657 97423696 -23833834 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1328 252 212 12 0 chr12 97423696 97423736 -23833794 - Lx9 LINE L1 -126 7518 7478 5 1328 225 236 15 30 chr12 97423753 97423884 -23833646 + (TA)n Simple_repeat Simple_repeat 1 129 0 5 1328 1445 281 42 11 chr12 97423884 97423927 -23833603 - Lx9 LINE L1 -127 7517 7475 5 1328 267 31 0 0 chr12 97423927 97423959 -23833571 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1328 1445 281 42 11 chr12 97423959 97424387 -23833143 - Lx9 LINE L1 -170 7474 7032 5 1328 1609 261 389 24 chr12 97424407 97424628 -23832902 + L1_Rod LINE L1 4499 4787 -1060 5 1328 423 56 0 0 chr12 97424628 97424682 -23832848 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1328 1609 261 233 21 chr12 97424682 97425112 -23832418 + L1_Rod LINE L1 4788 5358 -489 5 1328 1531 150 4 0 chr12 97425112 97425365 -23832165 + Lx2 LINE L1 6744 6997 0 5 1328 1609 261 233 21 chr12 97425365 97425677 -23831853 + L1_Rod LINE L1 5359 5701 -146 5 1328 1320 163 44 0 chr12 97425788 97426039 -23831491 - Lx2A LINE L1 0 7008 6747 5 1328 28 29 0 0 chr12 97426059 97426094 -23831436 + AT_rich Low_complexity Low_complexity 1 35 0 5 1328 21 89 0 0 chr12 97426402 97426458 -23831072 + AT_rich Low_complexity Low_complexity 1 56 0 5 1328 340 292 0 0 chr12 97427145 97427234 -23830296 + PB1D10 SINE Alu 27 115 -2 5 1328 6097 87 11 11 chr12 97427378 97428917 -23828613 - L1VL2 LINE L1 -1789 1826 291 5 1328 326 306 127 39 chr12 97428925 97429378 -23828152 - L1MC LINE L1 -2417 3729 3265 5 1328 979 31 0 0 chr12 97429378 97429505 -23828025 - L1Md_T LINE L1 0 6582 6456 5 1328 326 306 127 39 chr12 97429505 97430331 -23827199 - L1MC LINE L1 -2882 3264 2338 5 1328 276 373 88 15 chr12 97430841 97430977 -23826553 + RSINE1 SINE B4 11 156 -9 5 1328 405 0 0 0 chr12 97431135 97431180 -23826350 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1328 2508 90 8 5 chr12 97431201 97431570 -23825960 + L1_Mus3 LINE L1 6262 6631 -7 5 1328 786 146 0 68 chr12 97431570 97431746 -23825784 - Lx2 LINE L1 -4 6993 6830 5 1328 1468 149 11 19 chr12 97431747 97432013 -23825517 + Lx2 LINE L1 6027 6290 -707 6 1328 423 0 0 0 chr12 97432200 97432247 -23825283 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1328 525 32 0 0 chr12 97432247 97432309 -23825221 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1328 1403 164 20 182 chr12 97432323 97432779 -23824751 - RLTR23 LTR ERV1 -48 382 1 6 1328 654 323 36 31 chr12 97432830 97433258 -23824272 - MuRRS4-int LTR ERV1 -128 4935 4550 6 1328 10563 69 12 1 chr12 97433543 97434937 -23822593 + L1Md_F2 LINE L1 4176 5585 -298 6 1328 7822 54 3 3 chr12 97434938 97435921 -23821609 + L1Md_F2 LINE L1 5587 6569 -13 6 1328 563 191 0 9 chr12 97436866 97436977 -23820553 - RLTR23 LTR ERV1 -2 428 319 6 1328 189 0 0 0 chr12 97437923 97437944 -23819586 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 1328 468 0 0 0 chr12 97437944 97437995 -23819535 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1328 572 296 51 28 chr12 97438074 97438437 -23819093 + L1_Mur2 LINE L1 4512 4889 -1254 6 1328 2598 82 58 0 chr12 97438437 97438816 -23818714 - Lx3_Mus LINE L1 0 7009 6609 6 1328 520 308 31 122 chr12 97438816 97439401 -23818129 + L1_Mur2 LINE L1 4860 5374 -506 6 1328 21 0 0 0 chr12 97439460 97439481 -23818049 + AT_rich Low_complexity Low_complexity 1 21 0 6 1328 229 371 10 0 chr12 97439633 97439730 -23817800 + Lx8 LINE L1 6835 6932 -541 6 1328 40 59 0 0 chr12 97439730 97439798 -23817732 + AT_rich Low_complexity Low_complexity 1 68 0 6 1328 25 65 0 0 chr12 97439851 97439897 -23817633 + AT_rich Low_complexity Low_complexity 1 46 0 6 1328 2817 171 78 20 chr12 97440142 97440733 -23816797 + Lx4B LINE L1 6434 7058 0 6 1328 253 320 35 18 chr12 97440780 97440906 -23816624 + L1_Mur2 LINE L1 5440 5567 -733 6 1328 287 307 205 0 chr12 97440986 97441227 -23816303 + Lx7 LINE L1 5616 5912 -1561 6 1328 315 0 0 0 chr12 97442474 97442509 -23815021 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1328 236 278 16 14 chr12 97443185 97443264 -23814266 + B1F SINE Alu 60 139 -10 6 1328 411 289 58 0 chr12 97443465 97443586 -23813944 - Lx8 LINE L1 -458 7015 6888 6 1328 223 243 40 0 chr12 97443858 97443932 -23813598 + (TATATG)n Simple_repeat Simple_repeat 5 81 0 6 1328 37 23 0 0 chr12 97444439 97444483 -23813047 + AT_rich Low_complexity Low_complexity 1 44 0 6 1328 237 353 118 15 chr12 97444598 97444733 -23812797 + ID_B1 SINE B4 76 224 0 6 1328 381 297 134 10 chr12 97444965 97445343 -23812187 + L1M5 LINE L1 5317 5764 -476 6 1328 2962 46 3 3 chr12 97446035 97446405 -23811125 - L1Md_F2 LINE L1 -1 6581 6212 6 1328 238 250 52 96 chr12 97447297 97447412 -23810118 + Arthur1 DNA Tip100 2064 2173 -1774 6 1328 309 364 30 60 chr12 97447869 97448103 -23809427 - MLT1B LTR MaLR 0 390 164 6 1328 21 0 0 0 chr12 97448105 97448126 -23809404 + AT_rich Low_complexity Low_complexity 1 21 0 6 1328 19935 17 0 0 chr12 97448126 97451125 -23806405 - L1Md_A LINE L1 -2 6580 3583 6 1328 4669 119 1 3 chr12 97451120 97451796 -23805734 - Lx LINE L1 -366 6288 5614 6 1328 256 227 208 21 chr12 97453178 97453214 -23804316 + Lx9 LINE L1 5677 5727 -120 6 1328 441 0 0 0 chr12 97453214 97453263 -23804267 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1328 492 245 159 27 chr12 97453263 97453522 -23804008 + Lx9 LINE L1 5728 6048 -1596 6 1328 588 170 75 0 chr12 97453677 97453836 -23803694 + Lx9 LINE L1 7466 7636 -8 6 1328 3197 282 66 28 chr12 97453864 97454944 -23802586 + Lx9 LINE L1 6331 7451 -193 6 1328 365 70 18 0 chr12 97454959 97455016 -23802514 + (CATA)n Simple_repeat Simple_repeat 2 59 0 6 1328 2816 85 15 5 chr12 97456109 97456512 -23801018 - MTB_Mm LTR MaLR 0 407 1 6 1328 266 184 0 13 chr12 97456547 97456624 -23800906 - Lx3C LINE L1 -11 6965 6890 6 1328 25 65 0 0 chr12 97458087 97458133 -23799397 + AT_rich Low_complexity Low_complexity 1 46 0 6 1328 687 125 7 14 chr12 97458319 97458457 -23799073 + (TA)n Simple_repeat Simple_repeat 1 137 0 6 1328 225 0 0 0 chr12 97458484 97458509 -23799021 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1328 1145 82 0 0 chr12 97458569 97458716 -23798814 + B1_Mus1 SINE Alu 2 148 0 6 1328 336 161 0 0 chr12 97458716 97458778 -23798752 + A-rich Low_complexity Low_complexity 1 62 0 6 1328 278 284 39 10 chr12 97459007 97459110 -23798420 + MLT1E2 LTR MaLR 82 187 -440 6 1328 396 0 0 0 chr12 97460214 97460258 -23797272 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1328 441 324 13 52 chr12 97460266 97460419 -23797111 - B3A SINE B2 -48 150 4 6 1328 25 51 0 0 chr12 97460687 97460726 -23796804 + AT_rich Low_complexity Low_complexity 1 39 0 6 1328 5615 147 22 11 chr12 97460801 97461758 -23795772 - Lx2B LINE L1 -75 6925 5959 6 1328 1709 66 18 0 chr12 97461759 97461985 -23795545 - L1_Mus1 LINE L1 0 6567 6338 6 1328 799 322 113 35 chr12 97462093 97462862 -23794668 - L1ME2 LINE L1 -9 6155 5327 6 1328 433 321 11 49 chr12 97462857 97463122 -23794408 - L1MC LINE L1 -839 5307 5053 6 1328 543 172 23 0 chr12 97463312 97463440 -23794090 - Lx2A1 LINE L1 0 7008 6878 6 1328 335 264 129 20 chr12 97463745 97464039 -23793491 - L1ME2 LINE L1 -1616 4530 4205 6 1328 435 38 0 0 chr12 97464274 97464327 -23793203 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 6 1328 24 53 0 0 chr12 97464508 97464546 -23792984 + AT_rich Low_complexity Low_complexity 1 38 0 6 1328 238 314 23 92 chr12 97464785 97464915 -23792615 - B2_Mm2 SINE B2 -70 125 5 6 1328 466 332 64 42 chr12 97464940 97465393 -23792137 + L1M2 LINE L1 3779 4241 -1902 6 1328 213 65 0 0 chr12 97465533 97465564 -23791966 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 6 1328 327 25 0 0 chr12 97466255 97466295 -23791235 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1328 1527 280 37 2 chr12 97466314 97466751 -23790779 - Lx9 LINE L1 -254 7390 6939 6 1328 1136 252 23 13 chr12 97466754 97467060 -23790470 + Lx9 LINE L1 6620 6928 -716 6 1328 316 333 119 23 chr12 97467730 97467991 -23789539 - L1MEc LINE L1 -4347 2053 1768 6 1328 203 179 0 0 chr12 97468167 97468206 -23789324 + T-rich Low_complexity Low_complexity 1 39 0 6 1328 3152 11 0 39 chr12 97468368 97468750 -23788780 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1328 9282 30 3 0 chr12 97468750 97469826 -23787704 - IAPEz-int LTR ERVK 0 6481 5403 6 1328 20917 36 48 4 chr12 97469804 97472360 -23785170 - IAPEz-int LTR ERVK -3807 2674 8 6 1328 3152 11 0 39 chr12 97472360 97472742 -23784788 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1328 609 14 0 0 chr12 97473627 97473697 -23783833 + (TCC)n Simple_repeat Simple_repeat 3 72 0 6 1328 246 281 128 26 chr12 97475950 97476067 -23781463 - L2 LINE L2 -666 2753 2625 6 1328 317 230 13 13 chr12 97476143 97476218 -23781312 + MTEa LTR MaLR 243 317 -62 6 1328 342 289 0 0 chr12 97476453 97476536 -23780994 - Lx7 LINE L1 -376 7320 7238 6 1328 2368 58 0 0 chr12 97476618 97476913 -23780617 - L1Md_F2 LINE L1 -286 6296 6002 6 1328 2307 41 7 0 chr12 97476913 97477204 -23780326 + L1Md_F2 LINE L1 6290 6582 0 6 1328 261 0 0 0 chr12 97477234 97477263 -23780267 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1328 2511 286 43 8 chr12 97477356 97478122 -23779408 - Lx7 LINE L1 -596 7100 6308 6 1328 374 385 26 26 chr12 97478441 97478593 -23778937 + RSINE1 SINE B4 13 164 -1 6 1328 930 218 92 10 chr12 97478759 97479051 -23778479 - Lx9 LINE L1 -1 7643 7328 6 1328 322 394 7 0 chr12 97479480 97479617 -23777913 + RSINE1 SINE B4 6 143 -22 6 1328 391 35 35 0 chr12 97479733 97479790 -23777740 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1328 3486 83 17 0 chr12 97480053 97480522 -23777008 + L1_Mus2 LINE L1 6090 6566 0 6 1328 22 35 0 0 chr12 97480562 97480591 -23776939 + AT_rich Low_complexity Low_complexity 1 29 0 6 1328 35 83 0 0 chr12 97480761 97480845 -23776685 + AT_rich Low_complexity Low_complexity 1 84 0 6 1328 1144 163 16 0 chr12 97480894 97481084 -23776446 - B2_Mm2 SINE B2 -2 193 1 6 1328 22 56 0 0 chr12 97481366 97481402 -23776128 + AT_rich Low_complexity Low_complexity 1 36 0 6 1328 2544 89 102 8 chr12 97481716 97482088 -23775442 - MTB_Mm LTR MaLR 0 407 1 6 1328 296 292 14 0 chr12 97482366 97482438 -23775092 - PB1D10 SINE Alu -9 108 36 6 1328 202 222 0 18 chr12 97482453 97482508 -23775022 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 6 1328 462 189 20 40 chr12 97483110 97483209 -23774321 - B3 SINE B2 -109 107 11 6 1328 450 267 130 0 chr12 97483210 97483371 -23774159 + Lx4B LINE L1 6869 7050 -8 6 1328 314 217 68 17 chr12 97483383 97483500 -23774030 + L1M4 LINE L1 3400 3522 -2624 6 1328 8954 20 10 0 chr12 97483491 97484534 -23772996 - L1Md_A LINE L1 -112 5771 4719 6 1328 6952 40 0 1 chr12 97484534 97485370 -23772160 + L1Md_A LINE L1 5745 6579 -3 6 1328 222 37 0 0 chr12 97485548 97485575 -23771955 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 6 1328 533 314 31 5 chr12 97485576 97485771 -23771759 - B3 SINE B2 -14 202 3 6 1328 744 93 291 7 chr12 97486234 97486375 -23771155 + B2_Mm2 SINE B2 1 181 -14 6 1328 35 0 0 0 chr12 97486378 97486413 -23771117 + AT_rich Low_complexity Low_complexity 1 35 0 6 1328 3711 134 47 38 chr12 97486414 97487120 -23770410 - Lx3A LINE L1 -7 6974 6263 6 1328 1332 121 13 21 chr12 97487120 97487356 -23770174 - Lx3A LINE L1 -799 6174 5941 6 1328 22 35 0 0 chr12 97487358 97487387 -23770143 + AT_rich Low_complexity Low_complexity 1 29 0 6 1328 428 248 0 16 chr12 97487942 97488065 -23769465 + Lx9 LINE L1 7517 7637 -7 6 1328 611 48 12 0 chr12 97489003 97489086 -23768444 + (CA)n Simple_repeat Simple_repeat 2 85 0 6 1328 25 0 0 0 chr12 97489162 97489187 -23768343 + AT_rich Low_complexity Low_complexity 1 25 0 6 1328 216 0 0 0 chr12 97489260 97489284 -23768246 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1328 406 351 53 30 chr12 97489540 97490337 -23767193 - L1M2 LINE L1 -425 5455 4673 6 1328 1067 200 70 0 chr12 97490326 97490556 -23766974 + Lx4B LINE L1 5747 5992 -1066 6 1328 1093 143 0 110 chr12 97490556 97490617 -23766913 + Lx LINE L1 6452 6505 -149 6 1328 1155 76 0 0 chr12 97490617 97490762 -23766768 + B1_Mm SINE Alu 1 145 -2 6 1328 237 65 0 0 chr12 97490762 97490793 -23766737 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1328 1093 143 0 110 chr12 97490793 97490958 -23766572 + Lx LINE L1 6506 6653 -1 6 1328 4160 210 68 12 chr12 97490951 97491929 -23765601 + Lx4B LINE L1 6010 7041 -17 6 1328 645 14 0 0 chr12 97491999 97492073 -23765457 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 6 1328 233 247 11 34 chr12 97492105 97492193 -23765337 + A-rich Low_complexity Low_complexity 5 90 0 6 1328 568 218 92 0 chr12 97492193 97492335 -23765195 - Lx6 LINE L1 -1221 6239 6085 6 1328 550 268 47 8 chr12 97492336 97492464 -23765066 + ETnERV2-int LTR ERVK 7070 7202 -204 7 1328 960 252 33 33 chr12 97492874 97493174 -23764356 - Lx6 LINE L1 -1401 6059 5760 6 1328 1109 187 5 19 chr12 97494205 97494412 -23763118 - 7SK RNA RNA -93 238 35 7 1328 4335 113 21 5 chr12 97494412 97495077 -23762453 + Lx3_Mus LINE L1 6334 7009 0 7 1328 241 273 13 0 chr12 97495543 97495620 -23761910 + (TA)n Simple_repeat Simple_repeat 1 78 0 7 1328 1597 26 0 10 chr12 97496049 97496241 -23761289 - B2_Mm1t SINE B2 -3 190 1 7 1328 424 271 62 54 chr12 97497432 97497561 -23759969 + MTEb LTR MaLR 1 130 -249 7 1328 492 100 0 0 chr12 97497613 97497693 -23759837 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1328 269 298 133 14 chr12 97498887 97499030 -23758500 - MLT1C LTR MaLR -57 410 251 7 1328 369 58 0 0 chr12 97499512 97499564 -23757966 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1328 499 246 93 65 chr12 97499647 97499691 -23757839 + Lx7 LINE L1 7408 7456 -240 7 1328 381 43 0 0 chr12 97499691 97499738 -23757792 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1328 499 246 93 65 chr12 97499738 97499971 -23757559 + Lx7 LINE L1 7457 7692 -4 7 1328 406 338 24 19 chr12 97500371 97500579 -23756951 + B3 SINE B2 2 210 -6 1 1328 430 352 132 21 chr12 97502570 97502956 -23754574 + MLT1H LTR MaLR 118 546 -3 2 1328 306 0 0 0 chr12 97503824 97503858 -23753672 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 3 1328 228 35 0 0 chr12 97504540 97504569 -23752961 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1328 31 44 0 0 chr12 97504739 97504784 -23752746 + AT_rich Low_complexity Low_complexity 1 45 0 5 1328 664 219 42 54 chr12 97504905 97505166 -23752364 - Lx9 LINE L1 -126 7518 7261 6 1328 306 108 40 0 chr12 97505215 97505289 -23752241 + (TTTTG)n Simple_repeat Simple_repeat 4 80 0 7 1328 4580 136 5 4 chr12 97505295 97506085 -23751445 - L1_Mur1 LINE L1 -2395 3491 2701 8 1328 2691 126 20 138 chr12 97506081 97506682 -23750848 + L1_Mur1 LINE L1 4310 4839 -1047 9 1328 1057 188 118 15 chr12 97506675 97507005 -23750525 + Lx3C LINE L1 5963 6363 -646 1 1328 3359 64 21 40 chr12 97507007 97507482 -23750048 + L1Md_F2 LINE L1 6103 6568 -14 1 1328 3338 157 22 28 chr12 97507495 97508136 -23749394 + Lx3C LINE L1 6337 6973 -3 1 1328 284 354 133 29 chr12 97511166 97511575 -23745955 - MLT2B4 LTR ERVL -41 526 3 1 1328 491 0 17 0 chr12 97511868 97511927 -23745603 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1328 24 32 0 0 chr12 97512499 97512530 -23745000 + AT_rich Low_complexity Low_complexity 1 31 0 1 1328 677 284 9 43 chr12 97512886 97513096 -23744434 + B3 SINE B2 7 209 -7 1 1328 2250 235 38 42 chr12 97515274 97515697 -23741833 + MYSERV6-int LTR ERVK 3956 4383 -4576 1 1328 180 0 0 0 chr12 97515697 97515717 -23741813 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1328 2250 250 42 48 chr12 97515717 97516053 -23741477 + MYSERV6-int LTR ERVK 4165 4614 -4345 1 1328 457 146 41 10 chr12 97516134 97516231 -23741299 - L1_Mus4 LINE L1 -5 6633 6534 1 1328 2828 123 9 4 chr12 97516231 97516405 -23741125 - L1_Mus4 LINE L1 -591 6045 5870 1 1328 315 0 0 0 chr12 97516405 97516440 -23741090 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 20 32441 89 12 0 chr12 97516440 97521803 -23735727 - L1_Mus4 LINE L1 -767 5869 443 1 1329 25 0 0 0 chr12 97521927 97521952 -23735578 + AT_rich Low_complexity Low_complexity 1 25 0 2 1329 191 146 0 24 chr12 97522484 97522526 -23735004 + CT-rich Low_complexity Low_complexity 4 44 0 2 1329 199 381 41 0 chr12 97523189 97523286 -23734244 + L2b LINE L2 3275 3375 0 2 1329 198 71 0 0 chr12 97523359 97523387 -23734143 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1329 576 0 0 0 chr12 97523406 97523470 -23734060 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1329 3027 114 40 8 chr12 97523724 97524203 -23733327 + L1_Mus3 LINE L1 6145 6638 0 2 1329 653 338 66 50 chr12 97524621 97525045 -23732485 + Lx8 LINE L1 6468 6898 -575 2 1329 288 0 0 0 chr12 97525073 97525105 -23732425 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1329 237 304 130 17 chr12 97525124 97525301 -23732229 - Tigger1 DNA MER2_type -11 2407 2211 2 1329 995 196 55 18 chr12 97525308 97525526 -23732004 + URR1A DNA MER1_type 1 226 0 2 1329 1484 314 57 79 chr12 97525550 97526535 -23730995 - Tigger1 DNA MER2_type -227 2191 1229 2 1329 22 35 0 0 chr12 97526624 97526653 -23730877 + AT_rich Low_complexity Low_complexity 1 29 0 3 1329 1035 69 28 0 chr12 97526653 97526797 -23730733 - B1_Mus1 SINE Alu 0 148 1 3 1329 8339 35 3 2 chr12 97526811 97528126 -23729404 - L1Md_F2 LINE L1 0 6582 5267 3 1329 1621 51 19 0 chr12 97528158 97528372 -23729158 - L1Md_F2 LINE L1 -1 6581 6364 3 1329 3620 70 0 0 chr12 97528372 97528829 -23728701 + L1Md_F2 LINE L1 5914 6370 -212 3 1329 501 329 75 29 chr12 97529074 97529381 -23728149 - Lx8 LINE L1 -256 7217 6897 3 1329 357 351 40 0 chr12 97529406 97529554 -23727976 - Tigger1 DNA MER2_type -1262 1156 1003 2 1329 660 339 51 15 chr12 97529585 97529917 -23727613 - Tigger1 DNA MER2_type -1495 923 580 2 1329 549 0 0 0 chr12 97531678 97531739 -23725791 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1329 3960 128 50 0 chr12 97531752 97532414 -23725116 - Lx3B LINE L1 -2 6971 6277 3 1329 988 161 18 0 chr12 97532414 97532582 -23724948 + Lx3B LINE L1 6122 6292 -681 3 1329 333 283 30 12 chr12 97532661 97532829 -23724701 - L1_Mur3 LINE L1 -4248 1632 1462 3 1329 21 0 0 0 chr12 97533675 97533696 -23723834 + AT_rich Low_complexity Low_complexity 1 21 0 3 1329 423 315 58 10 chr12 97533948 97534153 -23723377 - ID_B1 SINE B4 -8 216 2 3 1329 38 85 0 0 chr12 97534166 97534260 -23723270 + AT_rich Low_complexity Low_complexity 1 94 0 4 1329 279 204 71 0 chr12 97534389 97534502 -23723028 + (TA)n Simple_repeat Simple_repeat 2 122 0 4 1329 3080 61 10 10 chr12 97534900 97535313 -23722217 - L1Md_F2 LINE L1 -2 6580 6168 4 1329 645 71 0 0 chr12 97535313 97535397 -23722133 + L1Md_F2 LINE L1 6066 6149 -433 4 1329 2705 180 97 26 chr12 97535405 97535929 -23721601 - Lx2B LINE L1 -4 6996 6431 4 1329 3436 25 2 0 chr12 97535929 97536324 -23721206 - MTA_Mm LTR MaLR 0 396 1 4 1329 2705 180 97 26 chr12 97536324 97536376 -23721154 - Lx2B LINE L1 -570 6430 6379 4 1329 605 324 88 8 chr12 97539635 97539884 -23717646 + B4A SINE B4 22 290 -2 4 1329 273 350 53 47 chr12 97540012 97540183 -23717347 + B4 SINE B4 1 172 -120 4 1329 2164 132 9 0 chr12 97540468 97540800 -23716730 - Lx3A LINE L1 -10 6971 6637 4 1329 981 40 0 0 chr12 97541246 97541372 -23716158 + (TC)n Simple_repeat Simple_repeat 1 126 0 4 1329 270 0 0 0 chr12 97541372 97541401 -23716129 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1329 573 110 0 0 chr12 97541565 97541656 -23715874 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1329 232 229 29 0 chr12 97542405 97542475 -23715055 + (TTA)n Simple_repeat Simple_repeat 2 73 0 5 1329 513 181 15 8 chr12 97543513 97543647 -23713883 + GA-rich Low_complexity Low_complexity 2 136 0 5 1329 22 0 0 0 chr12 97544071 97544093 -23713437 + AT_rich Low_complexity Low_complexity 1 22 0 5 1329 286 287 64 0 chr12 97544716 97544810 -23712720 - ID_B1 SINE B4 -1 223 124 5 1329 25 51 0 0 chr12 97545326 97545365 -23712165 + AT_rich Low_complexity Low_complexity 1 39 0 5 1329 192 217 0 0 chr12 97546400 97546446 -23711084 + GA-rich Low_complexity Low_complexity 3 48 0 5 1329 673 275 24 63 chr12 97546456 97546662 -23710868 + B3A SINE B2 1 198 0 5 1329 858 214 169 31 chr12 97546679 97547035 -23710495 + RLTR9E LTR ERVK 5 409 0 5 1329 189 0 0 0 chr12 97547090 97547111 -23710419 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1329 211 365 109 33 chr12 97547789 97547999 -23709531 - L2 LINE L2 -1150 2269 2044 6 1329 217 260 20 0 chr12 97548470 97548520 -23709010 + (CATA)n Simple_repeat Simple_repeat 1 51 0 6 1329 696 154 0 0 chr12 97549899 97550022 -23707508 + (TA)n Simple_repeat Simple_repeat 2 124 0 6 1329 826 355 78 9 chr12 97550837 97551375 -23706155 - Lx9 LINE L1 -627 7017 6443 6 1329 572 179 0 53 chr12 97551427 97551616 -23705914 + CT-rich Low_complexity Low_complexity 2 180 0 6 1329 387 0 0 0 chr12 97551616 97551659 -23705871 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1329 204 40 0 0 chr12 97551663 97551688 -23705842 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 1329 201 60 0 91 chr12 97552280 97552335 -23705195 + A-rich Low_complexity Low_complexity 4 53 0 6 1329 7697 75 4 2 chr12 97552581 97554183 -23703347 - L1Md_F2 LINE L1 -4 6578 4971 6 1329 1969 112 3 13 chr12 97554181 97554496 -23703034 + L1_Mm LINE L1 3795 4106 -1777 6 1329 243 327 39 124 chr12 97554625 97554754 -23702776 - B4A SINE B4 0 292 175 7 1329 477 263 59 20 chr12 97555290 97555492 -23702038 - L1MA7 LINE L1 -282 6009 5800 7 1329 446 0 19 0 chr12 97555646 97555700 -23701830 + (CTA)n Simple_repeat Simple_repeat 1 55 0 7 1329 618 193 17 0 chr12 97556963 97557139 -23700391 + GA-rich Low_complexity Low_complexity 2 180 0 7 1329 267 354 61 9 chr12 97557333 97557447 -23700083 - B4 SINE B4 -170 122 3 7 1329 257 155 17 0 chr12 97557671 97557729 -23699801 + GA-rich Low_complexity Low_complexity 2 60 0 7 1329 3116 226 84 8 chr12 97557930 97558713 -23698817 + Lx2B LINE L1 6153 6995 -5 7 1329 22 35 0 0 chr12 97559865 97559894 -23697636 + AT_rich Low_complexity Low_complexity 1 29 0 7 1329 28 91 0 0 chr12 97560087 97560164 -23697366 + AT_rich Low_complexity Low_complexity 1 77 0 7 1329 22 35 0 0 chr12 97560435 97560464 -23697066 + AT_rich Low_complexity Low_complexity 1 29 0 7 1329 452 365 40 10 chr12 97562355 97562557 -23694973 - MLT2D LTR ERVL -169 245 38 7 1329 21 0 0 0 chr12 97562801 97562822 -23694708 + AT_rich Low_complexity Low_complexity 1 21 0 8 1329 3038 127 24 2 chr12 97562823 97563289 -23694241 - Lx3A LINE L1 -4 6977 6502 8 1329 348 397 35 13 chr12 97563522 97563554 -23693976 - Lx9 LINE L1 -147 7326 7294 8 1329 425 50 17 0 chr12 97563554 97563614 -23693916 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1329 467 356 15 10 chr12 97563614 97563832 -23693698 - Lx9 LINE L1 -237 7407 7095 8 1329 24 32 0 0 chr12 97564362 97564393 -23693137 + AT_rich Low_complexity Low_complexity 1 31 0 8 1329 2968 196 197 20 chr12 97564556 97565286 -23692244 + Lx4A LINE L1 6200 7058 0 8 1329 23 54 0 0 chr12 97566325 97566362 -23691168 + AT_rich Low_complexity Low_complexity 1 37 0 8 1329 2906 193 23 26 chr12 97566683 97567154 -23690376 + RLTR20D LTR ERVK 3 478 -90 8 1329 996 106 0 0 chr12 97567154 97567324 -23690206 + (TG)n Simple_repeat Simple_repeat 2 171 0 8 1329 2906 193 23 26 chr12 97567324 97567417 -23690113 + RLTR20D LTR ERVK 479 565 -3 8 1329 2262 53 0 0 chr12 97567937 97568220 -23689310 + L1_Mus1 LINE L1 6284 6566 -1 8 1329 390 213 188 21 chr12 97568768 97568960 -23688570 - Lx9 LINE L1 0 7644 7421 9 1329 280 190 138 12 chr12 97568957 97569037 -23688493 + Lx9 LINE L1 7339 7428 -216 9 1329 501 32 0 0 chr12 97569490 97569553 -23687977 + (GA)n Simple_repeat Simple_repeat 2 64 0 9 1329 32842 89 18 6 chr12 97571137 97577275 -23680255 - L1Md_F2 LINE L1 -12 6570 366 9 1329 25 90 0 0 chr12 97577322 97577389 -23680141 + AT_rich Low_complexity Low_complexity 1 67 0 9 1329 508 278 87 5 chr12 97577411 97577606 -23679924 - B3 SINE B2 -3 213 3 9 1329 28 0 0 0 chr12 97578053 97578081 -23679449 + AT_rich Low_complexity Low_complexity 1 28 0 9 1329 553 319 72 69 chr12 97578987 97579378 -23678152 - MLT1D LTR MaLR 0 505 114 9 1329 423 0 0 0 chr12 97579708 97579755 -23677775 + (TA)n Simple_repeat Simple_repeat 1 47 0 9 1329 315 0 0 0 chr12 97579755 97579789 -23677741 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1329 411 21 0 0 chr12 97580551 97580599 -23676931 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1329 351 153 14 42 chr12 97580615 97580728 -23676802 + B1_Mur4 SINE Alu 41 150 0 1 1329 641 233 39 0 chr12 97581380 97581509 -23676021 - B1_Mur3 SINE Alu -6 143 10 1 1329 441 0 0 0 chr12 97586541 97586590 -23670940 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1329 262 291 11 11 chr12 97586900 97586987 -23670543 + GA-rich Low_complexity Low_complexity 1 87 0 1 1329 804 80 0 0 chr12 97586989 97587102 -23670428 + (GGAA)n Simple_repeat Simple_repeat 2 114 0 1 1329 401 341 118 94 chr12 97587231 97587561 -23669969 + ORR1D2 LTR MaLR 6 343 -16 1 1329 399 21 0 0 chr12 97587941 97587989 -23669541 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1329 1021 117 0 0 chr12 97588019 97588164 -23669366 + B1_Mus1 SINE Alu 3 147 -1 1 1329 24 0 0 0 chr12 97588177 97588201 -23669329 + AT_rich Low_complexity Low_complexity 1 24 0 1 1329 182 174 22 0 chr12 97588374 97588420 -23669110 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1329 1454 101 0 0 chr12 97590166 97590365 -23667165 - Lx LINE L1 -493 6161 5963 1 1329 2936 132 32 11 chr12 97590365 97590831 -23666699 + Lx LINE L1 6146 6621 -33 1 1329 6028 77 6 0 chr12 97590832 97591628 -23665902 - RLTR13B1 LTR ERVK 0 893 93 1 1329 6388 34 0 1 chr12 97591628 97592399 -23665131 - L1_Mm LINE L1 -854 5029 4260 1 1329 990 151 0 0 chr12 97592782 97592954 -23664576 + GA-rich Low_complexity Low_complexity 2 173 0 1 1329 21 71 0 0 chr12 97593162 97593204 -23664326 + AT_rich Low_complexity Low_complexity 1 42 0 1 1329 633 207 29 22 chr12 97593624 97593762 -23663768 + B1_Mur1 SINE Alu 10 148 -1 1 1329 407 338 37 17 chr12 97593994 97594172 -23663358 + B3 SINE B2 1 180 -13 1 1329 21 0 0 0 chr12 97594172 97594193 -23663337 + AT_rich Low_complexity Low_complexity 1 21 0 1 1329 1179 56 0 0 chr12 97594339 97594483 -23663047 - B1_Mus1 SINE Alu 0 148 5 1 1329 365 294 202 0 chr12 97595799 97595908 -23661622 + B1_Mur1 SINE Alu 1 131 -18 1 1329 495 82 0 0 chr12 97595920 97595993 -23661537 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1 1329 23 92 0 0 chr12 97596030 97596095 -23661435 + AT_rich Low_complexity Low_complexity 1 65 0 1 1329 209 341 0 12 chr12 97596816 97596899 -23660631 + (CACCAT)n Simple_repeat Simple_repeat 2 83 0 1 1329 288 0 0 0 chr12 97596900 97596932 -23660598 + (CAG)n Simple_repeat Simple_repeat 1 32 0 1 1329 254 83 0 0 chr12 97597311 97597347 -23660183 + B1_Mus1 SINE Alu 2 37 -111 1 1329 7992 62 3 5 chr12 97597347 97598392 -23659138 + L1Md_F2 LINE L1 4544 5586 -297 1 1329 8211 36 7 1 chr12 97598392 97599378 -23658152 + L1Md_F2 LINE L1 5587 6578 -4 1 1329 923 167 0 11 chr12 97600228 97600410 -23657120 + CT-rich Low_complexity Low_complexity 1 180 0 1 1329 1097 226 59 22 chr12 97601535 97601807 -23655723 + Lx4B LINE L1 6760 7041 -17 1 1329 443 291 54 16 chr12 97602189 97602318 -23655212 - B1F2 SINE Alu -7 142 9 1 1329 260 311 11 0 chr12 97602842 97602932 -23654598 + L1MA9 LINE L1 6201 6291 -21 1 1329 1055 245 88 0 chr12 97602940 97603201 -23654329 - Lx6 LINE L1 -786 6674 6391 1 1329 1717 137 44 35 chr12 97604107 97604424 -23653106 - Lx LINE L1 -4 6650 6331 1 1329 189 0 0 0 chr12 97605691 97605712 -23651818 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1329 459 0 0 0 chr12 97605712 97605762 -23651768 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1329 23 33 0 0 chr12 97606738 97606768 -23650762 + AT_rich Low_complexity Low_complexity 1 30 0 1 1329 1325 145 16 31 chr12 97606995 97607252 -23650278 + Lx LINE L1 6402 6654 0 1 1329 2798 16 0 0 chr12 97607571 97607892 -23649638 - L1Md_A LINE L1 0 6582 6262 1 1329 26 0 0 0 chr12 97608039 97608065 -23649465 + AT_rich Low_complexity Low_complexity 1 26 0 1 1329 302 366 42 47 chr12 97608096 97608288 -23649242 - B3A SINE B2 0 198 8 1 1329 7249 144 28 14 chr12 97608337 97609566 -23647964 - Lx2 LINE L1 -47 6950 5705 1 1329 2689 158 70 8 chr12 97609566 97610096 -23647434 + L1_Mur2 LINE L1 3847 4409 -1468 1 1329 291 54 0 0 chr12 97610125 97610162 -23647368 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1329 2647 69 3 11 chr12 97610162 97610530 -23647000 - Lx2 LINE L1 -255 5631 5267 1 1329 216 60 59 20 chr12 97610530 97610581 -23646949 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1329 402 88 14 14 chr12 97610581 97610650 -23646880 - Lx2 LINE L1 -611 5275 5207 1 1329 6076 117 61 5 chr12 97610659 97611631 -23645899 + Lx3_Mus LINE L1 5984 7009 0 1 1329 227 213 0 0 chr12 97611641 97611688 -23645842 + A-rich Low_complexity Low_complexity 1 47 0 1 1329 3323 140 95 5 chr12 97611692 97612302 -23645228 - L1_Mus4 LINE L1 -4 6632 5968 1 1329 720 0 0 0 chr12 97612302 97612382 -23645148 + (TTC)n Simple_repeat Simple_repeat 1 80 0 1 1329 1011 161 0 0 chr12 97612382 97612562 -23644968 + CT-rich Low_complexity Low_complexity 1 180 0 1 1329 6362 137 35 6 chr12 97612568 97614280 -23643250 - L1_Mus3 LINE L1 -9 6629 4862 1 1329 7487 112 25 42 chr12 97614268 97615670 -23641860 - L1VL4 LINE L1 -1428 2131 764 1 1329 1667 55 5 9 chr12 97615670 97615892 -23641638 - L1_Mus2 LINE L1 0 6566 6346 1 1329 3162 202 61 57 chr12 97615892 97616459 -23641071 - L1VL4 LINE L1 -5539 763 156 1 1329 2122 158 45 45 chr12 97616468 97616886 -23640644 + L1_Mus4 LINE L1 6213 6630 -6 1 1329 358 214 60 20 chr12 97616882 97616982 -23640548 + L1_Mm LINE L1 4413 4516 -1367 1 1329 420 82 0 0 chr12 97617021 97617082 -23640448 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1329 24 67 0 0 chr12 97618048 97618093 -23639437 + AT_rich Low_complexity Low_complexity 1 45 0 1 1329 4316 47 4 0 chr12 97618356 97618886 -23638644 + L1Md_F2 LINE L1 6050 6581 -1 1 1329 21 0 0 0 chr12 97620113 97620134 -23637396 + AT_rich Low_complexity Low_complexity 1 21 0 1 1329 5478 137 9 20 chr12 97620135 97621070 -23636460 - Lx3A LINE L1 -7 6974 6051 1 1329 668 301 82 37 chr12 97621127 97621455 -23636075 - MTEb LTR MaLR -7 372 30 1 1329 1131 365 40 32 chr12 97621535 97622259 -23635271 - MTEb-int LTR MaLR 0 1580 851 1 1329 264 292 39 77 chr12 97622240 97622370 -23635160 - MTE2b LTR MaLR -251 128 4 1 1329 515 292 79 31 chr12 97622705 97622890 -23634640 - B4 SINE B4 -100 192 2 1 1329 1043 71 43 0 chr12 97623433 97623574 -23633956 + B1_Mus1 SINE Alu 1 147 -1 1 1329 21 57 0 0 chr12 97625072 97625107 -23632423 + AT_rich Low_complexity Low_complexity 1 35 0 1 1329 213 135 27 0 chr12 97625146 97625183 -23632347 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1 1329 240 243 13 13 chr12 97625164 97625239 -23632291 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 1 1329 305 204 71 0 chr12 97625620 97625718 -23631812 + L1_Rod LINE L1 5692 5796 -51 1 1329 414 0 0 0 chr12 97626255 97626301 -23631229 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 1 1329 1643 333 57 25 chr12 97626340 97627143 -23630387 + Lx8 LINE L1 6636 7464 -9 1 1329 1877 348 67 22 chr12 97627169 97628299 -23629231 + Lx8 LINE L1 6191 7371 -102 1 1329 562 367 69 19 chr12 97630160 97630538 -23626992 - Lx8 LINE L1 -528 6945 6549 1 1329 486 0 0 0 chr12 97630588 97630642 -23626888 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1329 4603 139 26 14 chr12 97632623 97633389 -23624141 + Lx3A LINE L1 6207 6981 0 1 1329 37 0 0 0 chr12 97633393 97633430 -23624100 + AT_rich Low_complexity Low_complexity 1 37 0 1 1329 450 0 0 0 chr12 97634287 97634337 -23623193 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1329 324 0 0 0 chr12 97634337 97634372 -23623158 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1329 297 310 19 29 chr12 97634372 97634475 -23623055 - B1_Mur3 SINE Alu -6 143 42 1 1329 965 232 78 12 chr12 97634721 97634965 -23622565 + RMER6C LTR ERVK 103 362 -328 1 1329 230 225 36 48 chr12 97636560 97636644 -23620886 - L2 LINE L2 -923 2496 2414 1 1329 451 324 42 52 chr12 97638431 97638624 -23618906 - B3A SINE B2 -4 212 22 1 1329 252 0 0 0 chr12 97638641 97638669 -23618861 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1329 2549 175 16 18 chr12 97638672 97639162 -23618368 - Lx2 LINE L1 -5 6992 6504 1 1329 350 129 0 14 chr12 97639188 97639259 -23618271 - Lx LINE L1 -3 6651 6582 1 1329 192 137 19 38 chr12 97639891 97639944 -23617586 + CT-rich Low_complexity Low_complexity 2 53 0 1 1329 1908 190 38 0 chr12 97640012 97640380 -23617150 - Lx2A1 LINE L1 -7 7001 6620 1 1329 22 0 0 0 chr12 97641265 97641287 -23616243 + AT_rich Low_complexity Low_complexity 1 22 0 1 1329 455 375 37 21 chr12 97641490 97641505 -23616025 - B3A SINE B2 -5 193 179 1 1329 864 99 0 0 chr12 97641505 97641647 -23615883 + (TC)n Simple_repeat Simple_repeat 2 143 0 1 1329 455 375 37 21 chr12 97641647 97641819 -23615711 - B3A SINE B2 -20 178 4 1 1329 31 0 0 0 chr12 97642254 97642285 -23615245 + AT_rich Low_complexity Low_complexity 1 31 0 1 1329 941 119 0 14 chr12 97642379 97642524 -23615006 + B1_Mus1 SINE Alu 6 148 0 1 1329 23 33 0 0 chr12 97642826 97642856 -23614674 + AT_rich Low_complexity Low_complexity 1 30 0 1 1329 184 77 25 25 chr12 97642908 97642948 -23614582 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1 1329 557 282 11 11 chr12 97642950 97643126 -23614404 - Lx4B LINE L1 -17 7041 6866 1 1329 21 0 0 0 chr12 97644189 97644210 -23613320 + AT_rich Low_complexity Low_complexity 1 21 0 1 1329 22 0 0 0 chr12 97644403 97644425 -23613105 + AT_rich Low_complexity Low_complexity 1 22 0 1 1329 1188 74 0 0 chr12 97644918 97645066 -23612464 + B1_Mus1 SINE Alu 1 148 0 1 1329 297 370 21 21 chr12 97645133 97645274 -23612256 - ID_B1 SINE B4 -2 222 82 1 1329 602 267 108 87 chr12 97645324 97645760 -23611770 - RMER2 LTR ERV1 -11 556 5 1 1329 1361 104 33 5 chr12 97645795 97646008 -23611522 + L1_Mus3 LINE L1 6414 6632 -6 1 1329 21 0 0 0 chr12 97646190 97646211 -23611319 + AT_rich Low_complexity Low_complexity 1 21 0 1 1329 513 0 0 0 chr12 97646821 97646878 -23610652 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1329 243 366 20 47 chr12 97647132 97647281 -23610249 + LTR33B LTR ERVL 334 478 -25 2 166 7651 169 23 1 chr12 97647753 97649065 -23608465 - Lx4A LINE L1 -130 6928 5589 2 1330 6450 96 23 15 chr12 97649065 97650051 -23607479 + Lx3_Mus LINE L1 6013 7006 -3 2 1330 29 47 0 0 chr12 97650188 97650231 -23607299 + AT_rich Low_complexity Low_complexity 1 43 0 2 1330 490 241 30 8 chr12 97652060 97652194 -23605336 + MTD LTR MaLR 1 137 -282 2 1330 479 279 21 7 chr12 97652212 97652353 -23605177 - ORR1D2 LTR MaLR -225 145 3 2 1330 306 50 0 0 chr12 97652404 97652444 -23605086 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2 1330 1193 34 0 7 chr12 97652697 97652844 -23604686 + B1_Mm SINE Alu 2 147 0 2 1330 393 55 0 53 chr12 97653805 97653881 -23603649 + (TCTCTG)n Simple_repeat Simple_repeat 6 77 0 2 1330 900 78 19 25 chr12 97653904 97654061 -23603469 - Lx3_Mus LINE L1 0 7009 6854 2 1330 218 237 0 70 chr12 97654069 97654169 -23603361 + T-rich Low_complexity Low_complexity 3 95 0 2 1330 311 292 105 63 chr12 97654284 97654569 -23602961 + L1M5 LINE L1 5475 5771 -393 2 1330 452 175 0 10 chr12 97654909 97655007 -23602523 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 2 1330 351 0 0 0 chr12 97655255 97655294 -23602236 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1330 452 143 10 0 chr12 97655296 97655394 -23602136 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 2 1330 228 135 0 0 chr12 97655755 97655792 -23601738 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1330 227 53 51 51 chr12 97655849 97655908 -23601622 + T-rich Low_complexity Low_complexity 2 60 0 2 1330 1346 67 83 0 chr12 97656189 97656382 -23601148 + L1_Mus3 LINE L1 6427 6635 -3 2 1330 289 318 0 23 chr12 97656816 97656903 -23600627 - RSINE1 SINE B4 0 165 81 2 1330 180 0 0 0 chr12 97656903 97656923 -23600607 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 2 1330 579 333 63 36 chr12 97658573 97658875 -23598655 - MTE2b LTR MaLR -6 373 64 2 1330 261 0 21 64 chr12 97658902 97658949 -23598581 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 2 1330 227 274 41 0 chr12 97659081 97659154 -23598376 - Lx7 LINE L1 -476 7220 7145 2 1330 388 308 62 62 chr12 97659186 97659411 -23598119 + Lx7 LINE L1 6303 6527 -1169 2 1330 409 358 32 43 chr12 97659579 97659766 -23597764 - B4A SINE B4 0 292 108 2 1330 3520 60 0 0 chr12 97659966 97660413 -23597117 + L1Md_F2 LINE L1 5140 5586 -297 2 1330 7195 88 9 4 chr12 97660413 97661404 -23596126 + L1Md_F2 LINE L1 5587 6582 0 2 1330 24 0 0 0 chr12 97661481 97661505 -23596025 + AT_rich Low_complexity Low_complexity 1 24 0 2 1330 192 40 0 0 chr12 97661757 97661782 -23595748 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 1330 1402 294 39 51 chr12 97661785 97662191 -23595339 - Lx5 LINE L1 -17 7033 6633 2 1330 495 33 0 0 chr12 97662191 97662252 -23595278 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1330 1402 294 39 51 chr12 97662252 97662358 -23595172 - Lx5 LINE L1 -418 6632 6527 2 1330 21 0 0 0 chr12 97662425 97662446 -23595084 + AT_rich Low_complexity Low_complexity 1 21 0 2 1330 363 23 0 0 chr12 97662535 97662579 -23594951 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1330 671 303 94 35 chr12 97662585 97663304 -23594226 - Lx7 LINE L1 -1539 6157 5398 2 1330 477 0 0 0 chr12 97663349 97663402 -23594128 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1330 823 291 42 102 chr12 97663418 97664034 -23593496 - Lx7 LINE L1 -810 5070 4492 2 1330 4273 104 51 40 chr12 97664250 97664993 -23592537 + RMER17A LTR ERVK 1 751 0 2 1330 1234 159 98 0 chr12 97664993 97665238 -23592292 + Lx LINE L1 6386 6654 0 2 1330 2583 209 57 45 chr12 97666589 97667206 -23590324 - RMER20B LTR ERVK 0 627 4 2 1330 448 283 108 32 chr12 97667209 97667395 -23590135 + B3 SINE B2 17 216 0 2 1330 12468 133 25 5 chr12 97667466 97670032 -23587498 + L1VL4 LINE L1 514 3118 -699 2 1330 7902 149 8 16 chr12 97670031 97670895 -23586635 + L1_Mus3 LINE L1 4538 5410 -473 2 1330 1637 16 21 0 chr12 97670895 97671084 -23586446 + B2_Mm1t SINE B2 1 193 0 2 1330 7902 114 3 15 chr12 97671084 97672295 -23585235 + L1_Mus3 LINE L1 5411 6590 -48 2 1330 1074 58 0 0 chr12 97672982 97673120 -23584410 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 2 1330 258 254 0 0 chr12 97673493 97673548 -23583982 + RLTR25A LTR ERVK 1 55 -1048 2 1330 276 77 0 0 chr12 97673953 97673992 -23583538 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1330 21 36 0 0 chr12 97674455 97674483 -23583047 + AT_rich Low_complexity Low_complexity 1 28 0 2 1330 21 57 0 0 chr12 97674977 97675012 -23582518 + AT_rich Low_complexity Low_complexity 1 35 0 2 1330 285 372 22 14 chr12 97675630 97675769 -23581761 - MLT2B4 LTR ERVL -362 194 55 2 1330 277 339 141 47 chr12 97675792 97675984 -23581546 - RMER15 LTR ERVL -16 559 350 2 1330 605 316 56 0 chr12 97676368 97676564 -23580966 - B3 SINE B2 -4 212 6 2 1330 1182 73 0 0 chr12 97676577 97676756 -23580774 + (CCTTG)n Simple_repeat Simple_repeat 2 180 0 2 1330 252 0 0 0 chr12 97676756 97676784 -23580746 + (TTCCC)n Simple_repeat Simple_repeat 1 28 0 2 1330 910 39 31 0 chr12 97676850 97676979 -23580551 + (TTCCC)n Simple_repeat Simple_repeat 4 136 0 2 1330 22 0 0 0 chr12 97677491 97677513 -23580017 + AT_rich Low_complexity Low_complexity 1 22 0 2 1330 24 0 0 0 chr12 97677580 97677604 -23579926 + AT_rich Low_complexity Low_complexity 1 24 0 2 1330 26 30 0 0 chr12 97677866 97677899 -23579631 + AT_rich Low_complexity Low_complexity 1 33 0 2 1330 33 25 0 0 chr12 97678361 97678401 -23579129 + AT_rich Low_complexity Low_complexity 1 40 0 2 1330 29 0 0 0 chr12 97678710 97678739 -23578791 + AT_rich Low_complexity Low_complexity 1 29 0 2 1330 196 177 20 40 chr12 97678743 97678843 -23578687 + (TATATG)n Simple_repeat Simple_repeat 4 101 0 2 1330 421 398 40 12 chr12 97678847 97679020 -23578510 - B3 SINE B2 -38 178 1 2 1330 192 271 86 78 chr12 97679072 97679188 -23578342 + L2 LINE L2 2613 2729 -690 2 1330 319 306 10 10 chr12 97679237 97679336 -23578194 + L2 LINE L2 2813 2911 -508 2 1330 30 59 0 0 chr12 97679340 97679391 -23578139 + AT_rich Low_complexity Low_complexity 1 51 0 2 1330 28 0 0 0 chr12 97679929 97679957 -23577573 + AT_rich Low_complexity Low_complexity 1 28 0 2 1330 215 286 47 12 chr12 97680574 97680659 -23576871 - MIRc SINE MIR -107 161 74 2 1330 534 314 99 23 chr12 97681256 97681608 -23575922 - MTEb LTR MaLR 0 379 1 2 1330 28 29 0 0 chr12 97681723 97681758 -23575772 + AT_rich Low_complexity Low_complexity 1 35 0 2 1330 452 384 43 36 chr12 97682001 97682277 -23575253 + B4A SINE B4 4 281 -11 2 1330 25 31 0 0 chr12 97682612 97682644 -23574886 + AT_rich Low_complexity Low_complexity 1 32 0 2 1330 618 216 71 89 chr12 97682651 97682819 -23574711 - B3 SINE B2 -10 185 21 2 1330 213 303 91 0 chr12 97682763 97682829 -23574701 - ID4 SINE ID -9 74 3 2 1330 466 181 9 9 chr12 97682951 97683057 -23574473 + GA-rich Low_complexity Low_complexity 3 108 0 2 1330 295 250 15 0 chr12 97683133 97683201 -23574329 - Lx7 LINE L1 -395 7301 7233 2 1330 2277 219 95 26 chr12 97684139 97684200 -23573330 - Lx4B LINE L1 0 7058 6998 2 1330 540 30 0 0 chr12 97684200 97684266 -23573264 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1330 2277 219 95 26 chr12 97684266 97684781 -23572749 - Lx4B LINE L1 -61 6997 6442 2 1330 2415 102 11 3 chr12 97684781 97685134 -23572396 + L1_Mus3 LINE L1 6280 6635 -3 2 1330 1713 160 17 3 chr12 97685134 97685428 -23572102 - Lx4B LINE L1 -453 6605 6308 2 1330 315 188 30 30 chr12 97685431 97685497 -23572033 + Lx4B LINE L1 6208 6273 -785 2 1330 461 348 32 6 chr12 97685528 97685684 -23571846 + RSINE1 SINE B4 4 163 -2 2 1330 335 180 141 33 chr12 97686311 97686403 -23571127 - HAL1-3A_ME LINE L1 -781 2077 1976 2 1330 290 412 8 0 chr12 97686558 97686677 -23570853 - B4A SINE B4 -169 123 4 2 1330 273 119 0 0 chr12 97686981 97687023 -23570507 + (CAT)n Simple_repeat Simple_repeat 2 43 0 2 1330 463 319 21 0 chr12 97687078 97687219 -23570311 - B3A SINE B2 -47 151 8 2 1330 207 0 0 0 chr12 97687777 97687800 -23569730 + (CTATG)n Simple_repeat Simple_repeat 5 27 0 2 1330 23 0 0 0 chr12 97688751 97688774 -23568756 + AT_rich Low_complexity Low_complexity 1 23 0 2 1330 1938 231 54 6 chr12 97688778 97689313 -23568217 - RMER1A Other Other -4 1062 417 2 1330 25 0 0 0 chr12 97689372 97689397 -23568133 + AT_rich Low_complexity Low_complexity 1 25 0 2 1330 184 327 83 58 chr12 97689600 97689720 -23567810 + MIRm SINE MIR 115 237 -39 2 1330 190 270 0 63 chr12 97689776 97689855 -23567675 - L4 LINE RTE -229 1800 1727 2 1330 431 315 63 19 chr12 97692588 97692795 -23564735 - B3 SINE B2 0 216 1 2 1330 22 0 0 0 chr12 97692802 97692824 -23564706 + AT_rich Low_complexity Low_complexity 1 22 0 2 1330 432 290 166 21 chr12 97692865 97693052 -23564478 - B3 SINE B2 0 216 3 2 1330 25 0 0 0 chr12 97693088 97693113 -23564417 + AT_rich Low_complexity Low_complexity 1 25 0 2 1330 180 0 0 0 chr12 97693148 97693168 -23564362 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1330 208 227 0 0 chr12 97693665 97693709 -23563821 + (CCA)n Simple_repeat Simple_repeat 1 44 0 2 1330 462 346 31 27 chr12 97694481 97694704 -23562826 - MER44B DNA MER2_type -313 237 14 2 1330 3021 241 82 50 chr12 97695226 97696052 -23561478 - Lx5 LINE L1 -38 7012 6160 2 1330 2859 188 95 8 chr12 97696664 97697297 -23560233 + RMER6C LTR ERVK 1 688 -2 2 1330 475 15 29 15 chr12 97697700 97697768 -23559762 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 2 1330 1135 51 0 0 chr12 97697768 97697906 -23559624 - B1_Mus2 SINE Alu -9 138 1 2 1330 2027 90 23 7 chr12 97698274 97698577 -23558953 - L1Md_F2 LINE L1 -1 6581 6274 2 1330 7417 159 39 10 chr12 97698597 97700168 -23557362 - Lx2B LINE L1 -5 6995 5384 2 1330 1694 153 97 6 chr12 97700166 97700515 -23557015 + L1_Mur2 LINE L1 2121 2501 -3376 2 1330 1158 209 107 39 chr12 97700514 97700852 -23556678 + L1_Mur2 LINE L1 4733 5093 -784 2 1330 2103 233 9 27 chr12 97700829 97700936 -23556594 + L1_Mur2 LINE L1 5332 5436 -441 2 1330 521 15 15 0 chr12 97700936 97701002 -23556528 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 2 1330 2103 233 9 27 chr12 97701002 97701450 -23556080 + L1_Mur2 LINE L1 5437 5876 -1 2 1330 2297 193 91 30 chr12 97701484 97702013 -23555517 + RLTR20B1 LTR ERVK 3 563 0 3 1330 3519 245 42 22 chr12 97702013 97703064 -23554466 + Lx4B LINE L1 5919 7000 0 3 1330 23 0 0 0 chr12 97703211 97703234 -23554296 + AT_rich Low_complexity Low_complexity 1 23 0 3 1330 4860 50 3 0 chr12 97703392 97703990 -23553540 - L1Md_F2 LINE L1 -17 6565 5966 3 1330 2391 144 71 9 chr12 97703990 97704411 -23553119 - L1Md_F LINE L1 -897 4986 4540 3 1330 3189 148 24 2 chr12 97704412 97705174 -23552356 + L1Md_F LINE L1 422 1198 -5418 3 1330 3581 68 6 0 chr12 97705169 97705638 -23551892 + L1Md_F2 LINE L1 5114 5585 -298 3 1330 7466 72 3 1 chr12 97705640 97706623 -23550907 + L1Md_F2 LINE L1 5588 6572 -10 3 1330 20429 129 4 6 chr12 97706652 97709045 -23548485 - L1Md_F LINE L1 -1329 4554 2154 3 1330 917 114 13 0 chr12 97709045 97709194 -23548336 + (TTCC)n Simple_repeat Simple_repeat 3 153 0 3 1330 20429 134 6 10 chr12 97709194 97710192 -23547338 - L1Md_F LINE L1 -3730 2153 1171 3 1330 441 0 0 0 chr12 97710192 97710241 -23547289 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1330 2572 229 32 96 chr12 97710241 97711272 -23546258 - L1Md_F LINE L1 -5468 1170 224 3 1330 244 319 0 0 chr12 97711309 97711403 -23546127 - Lx9 LINE L1 -34 7610 7517 3 1330 311 311 0 10 chr12 97711897 97712001 -23545529 + GA-rich Low_complexity Low_complexity 2 104 0 3 1330 371 56 27 27 chr12 97712539 97712612 -23544918 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1330 30 45 0 0 chr12 97712690 97712734 -23544796 + AT_rich Low_complexity Low_complexity 1 44 0 3 1330 976 259 12 27 chr12 97713811 97714069 -23543461 - RMER6B LTR ERVK -21 440 187 3 1330 21 0 0 0 chr12 97715681 97715702 -23541828 + AT_rich Low_complexity Low_complexity 1 21 0 3 1330 263 219 0 10 chr12 97715976 97716073 -23541457 + (CA)n Simple_repeat Simple_repeat 2 97 0 3 1330 329 118 0 19 chr12 97716076 97716128 -23541402 + HAL1-3A_ME LINE L1 1975 2025 -833 3 1330 1125 23 0 0 chr12 97716148 97716280 -23541250 + (GA)n Simple_repeat Simple_repeat 2 133 0 3 1330 3646 94 54 16 chr12 97716308 97716867 -23540663 + L1_Mus4 LINE L1 6053 6632 -4 3 1330 857 187 0 46 chr12 97716988 97717184 -23540346 + L1_Mur2 LINE L1 5126 5312 -565 3 1330 639 0 0 0 chr12 97717184 97717255 -23540275 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1330 7519 71 2 3 chr12 97717255 97718401 -23539129 - L1Md_F2 LINE L1 -21 6561 5418 3 1330 1046 106 0 0 chr12 97718403 97718545 -23538985 - B1_Mus2 SINE Alu -5 142 1 3 1330 1713 158 81 0 chr12 97718547 97718845 -23538685 + L1_Mur2 LINE L1 5302 5623 -254 3 1330 505 267 8 15 chr12 97718845 97718978 -23538552 + Lx2B LINE L1 6668 6799 -201 3 1330 323 254 58 50 chr12 97718977 97719097 -23538433 + Lx4B LINE L1 6933 7053 -5 3 1330 774 258 99 5 chr12 97719108 97719331 -23538199 + L1_Mur2 LINE L1 5359 5601 -285 3 1330 3099 154 10 0 chr12 97719333 97719548 -23537982 + Lx5 LINE L1 5366 5580 -297 3 1330 8089 51 1 0 chr12 97719548 97720543 -23536987 + L1Md_T LINE L1 5587 6582 0 3 1330 3099 155 17 3 chr12 97720543 97721082 -23536448 + Lx5 LINE L1 5581 6139 -911 3 1330 22 70 0 0 chr12 97721277 97721320 -23536210 + AT_rich Low_complexity Low_complexity 1 43 0 3 1330 221 204 21 54 chr12 97721443 97721536 -23535994 + (TTTA)n Simple_repeat Simple_repeat 2 91 0 3 1330 468 253 105 0 chr12 97722216 97722378 -23535152 + L1MC1 LINE L1 4466 4644 -1502 3 1330 315 332 48 128 chr12 97722821 97723094 -23534436 + L1MD LINE L1 5128 5378 -768 3 1330 1104 197 256 3 chr12 97723268 97723569 -23533961 - Lx3C LINE L1 -6 6970 6594 3 1330 329 276 99 12 chr12 97723677 97723849 -23533681 + L1MC1 LINE L1 5729 5915 -418 3 1330 332 271 50 30 chr12 97723895 97723994 -23533536 + B3A SINE B2 6 106 -92 3 1330 6852 141 21 34 chr12 97724071 97725337 -23532193 - Lx3A LINE L1 -8 6973 5724 3 1330 486 0 0 0 chr12 97725344 97725398 -23532132 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1330 647 161 0 20 chr12 97725398 97725550 -23531980 + GA-rich Low_complexity Low_complexity 2 150 0 3 1330 267 318 67 22 chr12 97725897 97726032 -23531498 - RMER15 LTR ERVL 0 575 435 3 1330 272 306 7 113 chr12 97727805 97727956 -23529574 - ID_B1 SINE B4 -2 222 88 3 1330 305 323 29 51 chr12 97727825 97727962 -23529568 - B1F SINE Alu -15 134 1 3 1330 26 0 0 0 chr12 97728094 97728120 -23529410 + AT_rich Low_complexity Low_complexity 1 26 0 3 1330 450 0 0 0 chr12 97728763 97728813 -23528717 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1330 204 67 0 0 chr12 97728813 97728842 -23528688 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1330 270 132 0 0 chr12 97729284 97729337 -23528193 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1330 949 92 41 34 chr12 97729659 97729806 -23527724 - B1_Mus1 SINE Alu 0 148 1 3 1330 1189 268 25 19 chr12 97730147 97730463 -23527067 + ORR1D1 LTR MaLR 1 318 -56 3 1330 204 97 0 0 chr12 97731092 97731123 -23526407 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 1330 369 337 29 46 chr12 97731710 97731990 -23525540 - Lx7 LINE L1 -78 7618 7344 3 1330 5112 190 20 4 chr12 97732174 97733151 -23524379 + Lx4B LINE L1 5705 6697 -361 3 1330 1852 272 56 4 chr12 97733130 97733662 -23523868 - Lx7 LINE L1 -722 6974 6415 3 1330 324 119 0 0 chr12 97734397 97734456 -23523074 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1330 382 312 63 47 chr12 97734835 97735110 -23522420 - MER47B DNA MER2_type -39 379 35 3 1330 33 80 0 0 chr12 97735425 97735500 -23522030 + AT_rich Low_complexity Low_complexity 1 75 0 3 1330 23 33 0 0 chr12 97736224 97736254 -23521276 + AT_rich Low_complexity Low_complexity 1 30 0 3 1330 696 74 0 0 chr12 97736829 97736924 -23520606 + (TC)n Simple_repeat Simple_repeat 1 95 0 3 1330 1380 62 0 0 chr12 97736925 97737104 -23520426 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 3 1330 405 167 307 7 chr12 97737209 97737348 -23520182 + RMER6A LTR ERVK 136 316 -440 3 1330 12722 144 27 1 chr12 97737355 97739713 -23517817 - L1_Mus4 LINE L1 -706 5932 3508 3 1330 4690 119 4 3 chr12 97739713 97740414 -23517116 + L1_Mus4 LINE L1 5933 6634 -2 3 1330 826 247 47 42 chr12 97740432 97740497 -23517033 + RMER6A LTR ERVK 300 373 -317 3 1330 738 78 0 0 chr12 97740497 97740599 -23516931 + (GGA)n Simple_repeat Simple_repeat 3 104 0 3 1330 1670 209 23 36 chr12 97740599 97740990 -23516540 + RMER6A LTR ERVK 346 728 -28 3 1330 23 54 0 0 chr12 97741169 97741206 -23516324 + AT_rich Low_complexity Low_complexity 1 37 0 3 1330 622 48 12 0 chr12 97741663 97741747 -23515783 + B1_Mm SINE Alu 63 147 0 3 1330 244 25 24 48 chr12 97741750 97741792 -23515738 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1330 384 179 0 0 chr12 97742405 97742483 -23515047 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1330 279 304 0 0 chr12 97742506 97742562 -23514968 - ID4 SINE ID -11 72 17 3 1330 21 0 0 0 chr12 97742852 97742873 -23514657 + AT_rich Low_complexity Low_complexity 1 21 0 3 1330 498 139 0 29 chr12 97742873 97742977 -23514553 - L1Md_F2 LINE L1 -3 6579 6479 3 1330 319 314 26 31 chr12 97743735 97743926 -23513604 - Lx9 LINE L1 -206 7438 7249 3 1330 206 174 22 0 chr12 97744086 97744132 -23513398 + GA-rich Low_complexity Low_complexity 2 48 0 3 1330 10960 45 6 0 chr12 97744150 97746189 -23511341 - L1Md_F2 LINE L1 -3 6579 4529 3 1330 866 296 124 27 chr12 97746207 97746996 -23510534 + L1_Rod LINE L1 3616 4461 -1386 3 1330 507 33 0 0 chr12 97747663 97747724 -23509806 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1330 644 337 17 21 chr12 97747909 97748200 -23509330 - B4A SINE B4 0 292 3 3 1330 207 0 0 0 chr12 97748374 97748397 -23509133 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1330 35393 36 1 0 chr12 97748958 97754962 -23502568 + L1Md_T LINE L1 1 5589 -297 3 1330 8984 5 0 0 chr12 97754962 97755999 -23501531 + L1Md_T LINE L1 5590 6585 0 3 1330 1086 350 62 55 chr12 97756477 97757238 -23500292 - Lx8 LINE L1 -270 7203 6438 3 1330 1013 338 26 37 chr12 97757429 97757810 -23499720 + MTEa LTR MaLR 1 377 -2 3 1330 236 83 48 32 chr12 97757895 97757957 -23499573 + A-rich Low_complexity Low_complexity 3 65 0 3 1330 243 226 0 56 chr12 97758898 97758987 -23498543 + A-rich Low_complexity Low_complexity 6 89 0 3 1330 298 204 0 0 chr12 97759048 97759102 -23498428 + Lx6 LINE L1 6654 6707 -753 3 1330 1869 286 134 25 chr12 97759154 97759883 -23497647 - Lx6 LINE L1 -3 7457 6649 3 1330 657 167 21 111 chr12 97759872 97760061 -23497469 + Lx5 LINE L1 5627 5798 -1252 3 1330 2503 278 45 15 chr12 97760063 97760776 -23496754 + Lx6 LINE L1 6712 7445 -15 3 1330 333 0 0 0 chr12 97760776 97760813 -23496717 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1330 3453 45 28 5 chr12 97760817 97761243 -23496287 + RLTR10C LTR ERVK 1 436 0 3 1330 190 219 31 0 chr12 97761244 97761308 -23496222 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1330 618 366 15 23 chr12 97761491 97761754 -23495776 - B4A SINE B4 -8 284 24 3 1330 233 244 22 65 chr12 97762538 97762630 -23494900 - RLTR40 LTR ERVK -159 658 571 3 1330 282 29 0 0 chr12 97763969 97764004 -23493526 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1330 555 16 0 0 chr12 97764004 97764067 -23493463 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1330 209 154 19 19 chr12 97764720 97764773 -23492757 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1330 820 138 42 35 chr12 97765866 97766009 -23491521 + B1_Mur3 SINE Alu 5 148 -1 3 1330 414 39 0 0 chr12 97766024 97766076 -23491454 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1330 202 220 0 65 chr12 97766209 97766316 -23491214 + T-rich Low_complexity Low_complexity 2 101 0 3 1330 21 57 0 0 chr12 97766412 97766447 -23491083 + AT_rich Low_complexity Low_complexity 1 35 0 3 1330 207 0 0 0 chr12 97766469 97766492 -23491038 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3 1330 22 35 0 0 chr12 97766711 97766740 -23490790 + AT_rich Low_complexity Low_complexity 1 29 0 3 1330 315 176 0 0 chr12 97766814 97766905 -23490625 + T-rich Low_complexity Low_complexity 1 91 0 3 1330 687 150 5 139 chr12 97766970 97766995 -23490535 - Lx LINE L1 -5 6631 6610 3 1330 1744 129 9 41 chr12 97766995 97767310 -23490220 + L1Md_F2 LINE L1 6261 6565 -17 3 1330 871 168 4 127 chr12 97767310 97767507 -23490023 - Lx LINE L1 -30 6624 6395 3 1330 192 77 0 0 chr12 97767920 97767946 -23489584 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1330 1899 174 6 0 chr12 97768094 97768444 -23489086 - L1_Mur2 LINE L1 -1323 4554 4203 3 1330 2751 200 10 13 chr12 97768445 97769043 -23488487 - MusHAL1 LINE L1 -805 1907 1312 3 1330 429 20 0 0 chr12 97769057 97769107 -23488423 + (TAAAA)n Simple_repeat Simple_repeat 3 52 0 4 1330 401 103 15 0 chr12 97769243 97769311 -23488219 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 4 1330 960 46 25 38 chr12 97770243 97770402 -23487128 + L1_Mus3 LINE L1 6476 6632 -6 4 1330 751 105 8 8 chr12 97770531 97770656 -23486874 + (GA)n Simple_repeat Simple_repeat 1 125 0 4 1330 396 361 30 0 chr12 97770667 97770800 -23486730 - RSINE1 SINE B4 -22 143 7 4 1330 1241 82 0 12 chr12 97771179 97771352 -23486178 + B2_Mm2 SINE B2 2 172 -23 4 1330 389 354 49 27 chr12 97771381 97771564 -23485966 - B3 SINE B2 -28 188 2 4 1330 912 104 0 0 chr12 97772066 97772200 -23485330 + (CATATA)n Simple_repeat Simple_repeat 5 138 0 4 1330 1059 104 0 0 chr12 97772211 97772355 -23485175 - B1_Mus1 SINE Alu -4 144 1 4 1330 304 143 21 21 chr12 97773353 97773446 -23484084 + (TCTCTG)n Simple_repeat Simple_repeat 4 96 0 4 1330 450 0 0 0 chr12 97773448 97773498 -23484032 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1330 24 32 0 0 chr12 97774043 97774074 -23483456 + AT_rich Low_complexity Low_complexity 1 31 0 4 1330 779 233 260 24 chr12 97774188 97774527 -23483003 - RMER12 LTR ERVK -145 1177 759 4 1330 450 225 0 0 chr12 97774528 97774670 -23482860 + (TGGA)n Simple_repeat Simple_repeat 1 142 0 4 1330 1489 159 188 4 chr12 97774719 97775063 -23482467 - RMER12 LTR ERVK -572 750 372 4 1330 939 66 11 0 chr12 97775061 97775198 -23482332 - B1_Mm SINE Alu 0 150 3 4 1330 32 43 0 0 chr12 97775499 97775545 -23481985 + AT_rich Low_complexity Low_complexity 1 46 0 4 1330 22 0 0 0 chr12 97776764 97776786 -23480744 + AT_rich Low_complexity Low_complexity 1 22 0 4 1330 344 227 30 20 chr12 97776832 97776931 -23480599 - Lx6 LINE L1 -176 7284 7185 4 1330 3297 251 101 19 chr12 97776927 97778285 -23479245 - Lx6 LINE L1 -764 6696 5197 4 1330 216 0 0 0 chr12 97778285 97778309 -23479221 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1330 2447 245 133 18 chr12 97778309 97778548 -23478982 - Lx6 LINE L1 -684 5196 4941 4 1330 1790 192 59 11 chr12 97778881 97779255 -23478275 - ORR1B1 LTR MaLR 0 394 3 4 1330 416 244 105 15 chr12 97779457 97779590 -23477940 - Lx7 LINE L1 0 7696 7552 4 1330 576 29 0 0 chr12 97779590 97779660 -23477870 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 166 366 129 0 0 chr12 97779691 97779753 -23477777 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1331 221 163 23 0 chr12 97779767 97779810 -23477720 + GA-rich Low_complexity Low_complexity 1 44 0 4 1331 1052 299 23 43 chr12 97779810 97779822 -23477708 - Lx7 LINE L1 -363 7333 7324 4 1331 180 0 0 0 chr12 97779822 97779842 -23477688 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1331 1052 299 23 43 chr12 97779842 97780221 -23477309 - Lx7 LINE L1 -373 7323 6950 4 1331 1542 151 7 18 chr12 97780619 97780896 -23476634 + Lx2 LINE L1 6724 6997 0 4 1331 25 51 0 0 chr12 97780952 97780991 -23476539 + AT_rich Low_complexity Low_complexity 1 39 0 4 1331 249 209 0 0 chr12 97781382 97781449 -23476081 + T-rich Low_complexity Low_complexity 3 69 0 4 1331 223 260 178 0 chr12 97782371 97782444 -23475086 + B4 SINE B4 2 87 -205 4 1331 21 0 0 0 chr12 97784013 97784034 -23473496 + AT_rich Low_complexity Low_complexity 1 21 0 4 1331 215 194 175 16 chr12 97784968 97785031 -23472499 - B1F2 SINE Alu -55 94 22 4 1331 500 0 0 16 chr12 97785296 97785357 -23472173 + (TTA)n Simple_repeat Simple_repeat 1 60 0 4 1331 648 0 0 0 chr12 97785761 97785833 -23471697 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1331 285 29 0 0 chr12 97786101 97786135 -23471395 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1331 597 28 0 0 chr12 97786135 97786205 -23471325 + (GA)n Simple_repeat Simple_repeat 1 71 0 4 1331 300 276 79 0 chr12 97786321 97786397 -23471133 - B4A SINE B4 -206 86 5 4 1331 2173 275 43 2 chr12 97786834 97787195 -23470335 - Lx5 LINE L1 -64 6986 6617 4 1331 225 0 0 0 chr12 97787195 97787220 -23470310 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1331 2173 275 43 2 chr12 97787220 97787415 -23470115 - Lx5 LINE L1 -434 6616 6409 4 1331 2855 236 99 5 chr12 97787822 97789009 -23468521 - Lx5 LINE L1 -637 6413 5110 4 1331 4881 196 43 53 chr12 97789010 97790263 -23467267 + Lx5 LINE L1 3871 5110 -767 4 1331 460 197 91 146 chr12 97790306 97790579 -23466951 + RLTR20C LTR ERVK 3 228 -340 4 1331 332 258 62 70 chr12 97790569 97790607 -23466923 + RLTR20C LTR ERVK 443 488 -90 4 1331 378 0 0 0 chr12 97790607 97790649 -23466881 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1331 459 35 0 0 chr12 97790649 97790705 -23466825 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1331 332 258 62 70 chr12 97790705 97790794 -23466736 + RLTR20C LTR ERVK 489 569 -9 4 1331 294 50 0 0 chr12 97791114 97791154 -23466376 + (TTG)n Simple_repeat Simple_repeat 1 40 0 4 1331 1116 68 0 13 chr12 97791155 97791166 -23466364 - B1_Mus1 SINE Alu -1 147 137 4 1331 261 0 0 0 chr12 97791166 97791195 -23466335 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1331 1116 68 0 13 chr12 97791195 97791332 -23466198 - B1_Mus1 SINE Alu -12 136 2 4 1331 839 331 27 11 chr12 97791394 97791654 -23465876 + ORR1D2 LTR MaLR 36 299 -71 4 1331 670 152 42 18 chr12 97791658 97791826 -23465704 - Lx LINE L1 -5 6649 6478 4 1331 4481 122 6 2 chr12 97791833 97792680 -23464850 - Lx LINE L1 -403 6251 5402 4 1331 226 158 0 0 chr12 97792680 97792718 -23464812 + ORR1D2 LTR MaLR 368 405 -14 4 1331 258 178 0 0 chr12 97792686 97792731 -23464799 + ORR1D2 LTR MaLR 326 370 0 4 1331 28 48 0 0 chr12 97792771 97792813 -23464717 + AT_rich Low_complexity Low_complexity 1 42 0 4 1331 330 359 87 53 chr12 97793393 97793599 -23463931 + B4 SINE B4 1 213 -79 4 1331 236 91 0 22 chr12 97793607 97793652 -23463878 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 4 1331 259 61 0 58 chr12 97793665 97793717 -23463813 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 1331 230 269 73 15 chr12 97793823 97793891 -23463639 - RMER3D2 LTR ERVK 0 590 519 4 1331 2257 191 36 18 chr12 97793872 97794315 -23463215 - RLTR31A_Mm LTR ERVK -133 451 1 4 1331 257 102 0 39 chr12 97794356 97794407 -23463123 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 4 1331 4328 199 65 29 chr12 97794531 97795449 -23462081 + Lx4A LINE L1 6105 7055 -3 4 1331 30 27 0 0 chr12 97795451 97795488 -23462042 + AT_rich Low_complexity Low_complexity 1 37 0 4 1331 437 330 168 15 chr12 97795776 97796044 -23461486 + MTE2a LTR MaLR 58 366 -13 4 1331 23 0 0 0 chr12 97796760 97796783 -23460747 + AT_rich Low_complexity Low_complexity 1 23 0 4 1331 432 0 0 0 chr12 97797418 97797466 -23460064 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1331 396 279 134 9 chr12 97797971 97798202 -23459328 + L1ME2z LINE L1 5731 5990 -454 4 1331 366 23 0 0 chr12 97798252 97798295 -23459235 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1331 4608 83 18 0 chr12 97799262 97799877 -23457653 - L1_Mus3 LINE L1 -81 6557 5932 4 1331 361 326 0 0 chr12 97799926 97800024 -23457506 + B3A SINE B2 38 135 -63 4 1331 441 103 0 0 chr12 97800039 97800107 -23457423 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1331 33 25 0 0 chr12 97800142 97800182 -23457348 + AT_rich Low_complexity Low_complexity 1 40 0 4 1331 575 126 63 0 chr12 97800278 97800405 -23457125 + Lx3_Mus LINE L1 6875 7009 0 4 1331 228 145 41 55 chr12 97800413 97800486 -23457044 + A-rich Low_complexity Low_complexity 2 73 0 4 1331 212 370 55 0 chr12 97800539 97800612 -23456918 - B1F SINE Alu -66 83 7 4 1331 216 158 0 0 chr12 97800865 97800903 -23456627 + (CACG)n Simple_repeat Simple_repeat 1 38 0 4 1331 886 260 246 47 chr12 97800912 97801356 -23456174 - MT2B LTR ERVL -61 540 9 4 1331 235 247 44 56 chr12 97801303 97801393 -23456137 - ORR1A3-int LTR MaLR -1291 672 584 4 1331 311 284 84 25 chr12 97801411 97801613 -23455917 - Lx9 LINE L1 -563 7081 6868 4 1331 356 111 0 16 chr12 97802026 97802090 -23455440 + (ATG)n Simple_repeat Simple_repeat 1 63 0 4 1331 468 35 0 0 chr12 97802092 97802150 -23455380 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1331 380 399 65 19 chr12 97802170 97802431 -23455099 - B4A SINE B4 -19 273 1 4 1331 315 0 0 0 chr12 97802941 97802976 -23454554 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1331 492 192 0 0 chr12 97803019 97803118 -23454412 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 1331 2935 71 31 0 chr12 97803688 97804116 -23453414 - L1_Mus1 LINE L1 -577 5990 5551 4 1331 4296 89 17 0 chr12 97804117 97804698 -23452832 + L1_Mus1 LINE L1 5977 6567 0 4 1331 183 80 0 0 chr12 97804754 97804779 -23452751 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1331 533 304 40 19 chr12 97806153 97806513 -23451017 - MTD LTR MaLR -3 416 18 4 1331 21 36 0 0 chr12 97807151 97807179 -23450351 + AT_rich Low_complexity Low_complexity 1 28 0 4 1331 24313 36 0 1 chr12 97808271 97811870 -23445660 - L1Md_F2 LINE L1 0 6582 2989 4 1331 24 67 0 0 chr12 97811882 97811927 -23445603 + AT_rich Low_complexity Low_complexity 1 45 0 4 1331 315 289 0 0 chr12 97811938 97812028 -23445502 + L1_Mur1 LINE L1 207 296 -6686 4 1331 3106 98 36 0 chr12 97812033 97812472 -23445058 + Lx3A LINE L1 6321 6775 -206 4 1331 28 29 0 0 chr12 97812492 97812527 -23445003 + AT_rich Low_complexity Low_complexity 1 35 0 4 1331 286 287 91 50 chr12 97812895 97812994 -23444536 - PB1D10 SINE Alu -12 105 3 4 1331 1234 282 123 24 chr12 97813288 97813906 -23443624 - Lx7 LINE L1 0 7696 7018 4 1331 1999 83 3 71 chr12 97813932 97814242 -23443288 + L1_Mus2 LINE L1 6277 6565 -1 4 1331 4942 247 41 47 chr12 97814258 97814784 -23442746 - L1_Mur3 LINE L1 -653 5227 4755 4 1331 2505 118 10 22 chr12 97814784 97815198 -23442332 - RLTR9E LTR ERVK 0 409 1 4 1331 4942 247 41 47 chr12 97815198 97816436 -23441094 - L1_Mur3 LINE L1 -1126 4754 3472 4 1331 324 103 0 0 chr12 97816441 97816499 -23441031 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 4 1331 1352 202 54 29 chr12 97816514 97816951 -23440579 - RMER17C LTR ERVK -521 437 17 4 1331 204 229 16 0 chr12 97816961 97817022 -23440508 + T-rich Low_complexity Low_complexity 3 64 0 4 1331 404 204 73 29 chr12 97817027 97817163 -23440367 - L1_Mur3 LINE L1 -2395 3485 3344 4 1331 481 219 20 7 chr12 97817146 97817293 -23440237 - L1_Mur3 LINE L1 -4447 1433 1285 4 1331 414 368 19 56 chr12 97817519 97817735 -23439795 + B3 SINE B2 3 210 -6 4 1331 2595 162 81 2 chr12 97818692 97819198 -23438332 - L1_Mur2 LINE L1 -1278 4599 4054 4 1331 7735 72 2 3 chr12 97819222 97820809 -23436721 - L1Md_F2 LINE L1 0 6582 4997 4 1331 3710 79 0 0 chr12 97820803 97821294 -23436236 + L1Md_F2 LINE L1 4513 5003 -880 4 1331 1281 201 13 16 chr12 97821286 97821599 -23435931 - L1_Mur2 LINE L1 -1819 4058 3747 4 1331 2004 163 47 7 chr12 97821596 97822004 -23435526 + L1_Mur2 LINE L1 4594 5017 -860 4 1331 515 305 17 11 chr12 97822008 97822187 -23435343 + Lx6 LINE L1 7275 7454 -6 4 1331 25 0 0 0 chr12 97822499 97822524 -23435006 + AT_rich Low_complexity Low_complexity 1 25 0 4 1331 34 65 0 0 chr12 97823338 97823400 -23434130 + AT_rich Low_complexity Low_complexity 1 62 0 5 1331 1093 63 35 0 chr12 97823404 97823546 -23433984 + B1_Mus2 SINE Alu 1 147 0 5 1331 397 48 35 46 chr12 97823546 97823633 -23433897 + (CAAAA)n Simple_repeat Simple_repeat 1 86 0 5 1331 21 0 0 0 chr12 97824451 97824472 -23433058 + AT_rich Low_complexity Low_complexity 1 21 0 5 1331 5840 122 20 16 chr12 97824472 97825440 -23432090 - Lx3A LINE L1 0 6981 6011 5 1331 3026 170 34 48 chr12 97826066 97826151 -23431379 - RLTR20A2 LTR ERVK 0 578 493 5 1331 588 29 0 0 chr12 97826151 97826221 -23431309 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1331 3026 170 34 48 chr12 97826221 97826721 -23430809 - RLTR20A2 LTR ERVK -86 492 3 5 1331 543 341 49 18 chr12 97826780 97827093 -23430437 + Lx8 LINE L1 7031 7368 -105 5 1331 222 115 38 19 chr12 97827348 97827401 -23430129 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 1331 434 209 0 42 chr12 97827407 97827502 -23430028 - B1_Mur4 SINE Alu -19 131 41 5 1331 468 232 0 0 chr12 97827533 97827800 -23429730 + CT-rich Low_complexity Low_complexity 1 267 0 5 1331 265 337 31 52 chr12 97827800 97827897 -23429633 - B4 SINE B4 -148 144 50 5 1331 1627 21 0 0 chr12 97828349 97828535 -23428995 - L1Md_F3 LINE L1 -810 5772 5587 5 1331 6361 35 1 3 chr12 97828536 97829301 -23428229 + L1Md_F3 LINE L1 5821 6584 0 5 1331 529 286 89 21 chr12 97829355 97829558 -23427972 + B3A SINE B2 15 216 0 5 1331 638 331 79 41 chr12 97829883 97830187 -23427343 + ORR1E LTR MaLR 1 319 -40 5 1331 312 48 0 0 chr12 97830187 97830229 -23427301 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1331 638 331 79 41 chr12 97830229 97830264 -23427266 + ORR1E LTR MaLR 320 353 -6 5 1331 600 93 0 0 chr12 97830343 97830440 -23427090 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 1331 180 97 0 0 chr12 97830441 97830472 -23427058 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1331 592 346 59 83 chr12 97830524 97830896 -23426634 - MTE2a LTR MaLR -14 365 3 5 1331 279 0 0 0 chr12 97830992 97831023 -23426507 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1331 689 127 30 0 chr12 97831023 97831157 -23426373 + GA-rich Low_complexity Low_complexity 2 139 0 5 1331 3932 166 6 14 chr12 97831157 97831872 -23425658 + RMER12 LTR ERVK 16 726 -596 5 1331 949 180 35 40 chr12 97831873 97832060 -23425470 - L1_Mm LINE L1 -1066 4817 4632 5 1331 198 0 0 0 chr12 97832060 97832082 -23425448 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 5 1331 949 180 35 40 chr12 97832082 97832096 -23425434 - L1_Mm LINE L1 -1252 4631 4618 5 1331 1050 160 95 0 chr12 97832095 97832295 -23425235 + L1_Mm LINE L1 4816 5034 -849 5 1331 25 51 0 0 chr12 97833521 97833560 -23423970 + AT_rich Low_complexity Low_complexity 1 39 0 5 1331 21 0 0 0 chr12 97833677 97833698 -23423832 + AT_rich Low_complexity Low_complexity 1 21 0 5 1331 25 31 0 0 chr12 97833884 97833916 -23423614 + AT_rich Low_complexity Low_complexity 1 32 0 5 1331 658 272 124 4 chr12 97835137 97835362 -23422168 - MTD LTR MaLR 0 419 168 5 1331 371 119 0 15 chr12 97835623 97835691 -23421839 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1331 658 305 71 25 chr12 97836056 97836295 -23421235 - 7SK RNA RNA -69 262 13 5 1331 354 80 0 0 chr12 97836304 97836354 -23421176 + (GGA)n Simple_repeat Simple_repeat 1 50 0 5 1331 1500 202 51 10 chr12 97836766 97837080 -23420450 - MTC LTR MaLR -4 417 91 5 1331 1371 170 12 0 chr12 97837083 97837324 -23420206 - L1_Mur1 LINE L1 -333 5553 5310 5 1331 4830 48 18 2 chr12 97837325 97837932 -23419598 + L1Md_F2 LINE L1 5953 6569 -13 5 1331 6265 156 12 9 chr12 97837971 97839022 -23418508 + Lx2B LINE L1 5587 6641 -359 5 1331 285 205 143 111 chr12 97839001 97839049 -23418481 + Lx2B LINE L1 6840 6892 -108 5 1331 1832 88 50 0 chr12 97839049 97839309 -23418221 - L1_Mus1 LINE L1 0 6567 6295 5 1331 285 205 143 111 chr12 97839309 97839386 -23418144 + Lx2B LINE L1 6893 6969 -31 5 1331 243 0 0 0 chr12 97839386 97839413 -23418117 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 5 1331 2459 145 52 38 chr12 97839415 97839910 -23417620 + Lx2 LINE L1 6492 6993 -4 5 1331 216 0 0 0 chr12 97839942 97839966 -23417564 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1331 362 253 10 10 chr12 97839973 97840069 -23417461 - MTC LTR MaLR -325 96 1 5 1331 195 129 0 0 chr12 97840097 97840128 -23417402 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1331 474 335 39 19 chr12 97840391 97840598 -23416932 + B3 SINE B2 4 214 -2 5 1331 237 385 22 0 chr12 97840786 97840921 -23416609 + MER5B DNA MER1_type 1 138 -40 5 1331 354 45 0 0 chr12 97843755 97843799 -23413731 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 1331 8411 109 19 28 chr12 97843799 97845946 -23411584 - Lx3A LINE L1 -13 6968 4857 5 1331 657 230 142 0 chr12 97846787 97847026 -23410504 + Lx5 LINE L1 896 1168 -5918 5 1331 2567 189 74 64 chr12 97847032 97847778 -23409752 + Lx5 LINE L1 1511 2263 -3614 5 1331 871 183 13 0 chr12 97847778 97847931 -23409599 - RMER19C LTR ERVK 0 611 457 5 1331 443 241 0 0 chr12 97847937 97848024 -23409506 - RMER19C LTR ERVK -273 338 252 5 1331 619 252 22 15 chr12 97848046 97848180 -23409350 - RMER19C LTR ERVK -333 278 144 5 1331 2182 176 97 32 chr12 97848180 97848643 -23408887 + RLTR25B LTR ERVK 1 493 -535 5 1331 7597 196 80 11 chr12 97848704 97851269 -23406261 + Lx5 LINE L1 4219 6920 -53 5 1331 4660 111 31 6 chr12 97851343 97852056 -23405474 + Lx3_Mus LINE L1 6271 7001 -8 5 1331 28 0 0 0 chr12 97852056 97852084 -23405446 + AT_rich Low_complexity Low_complexity 1 28 0 5 1331 668 77 10 0 chr12 97853647 97853751 -23403779 + (TC)n Simple_repeat Simple_repeat 1 105 0 5 1331 189 121 0 0 chr12 97853751 97853783 -23403747 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1331 189 0 0 0 chr12 97854862 97854883 -23402647 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1331 3421 179 34 13 chr12 97855534 97856212 -23401318 + RLTR17 LTR ERVK 1 692 0 5 1331 21 0 0 0 chr12 97856620 97856641 -23400889 + AT_rich Low_complexity Low_complexity 1 21 0 5 1331 411 350 65 54 chr12 97857825 97858103 -23399427 + MLT2B1 LTR ERVL 25 305 -215 5 1331 1302 154 74 42 chr12 97858391 97858703 -23398827 - RLTRETN_Mm LTR ERVK 0 322 1 5 1331 225 0 0 0 chr12 97858860 97858885 -23398645 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1331 752 304 74 84 chr12 97858885 97859387 -23398143 - Tigger7 DNA MER2_type -1939 552 56 5 1331 5170 207 43 71 chr12 97859426 97860555 -23396975 - Lx6 LINE L1 -1527 5933 4852 5 1331 1188 48 7 0 chr12 97860555 97860701 -23396829 - B1_Mm SINE Alu 0 147 1 5 1331 5170 206 43 73 chr12 97860701 97861129 -23396401 - Lx6 LINE L1 -1029 4851 4418 5 1331 26 30 0 0 chr12 97862411 97862444 -23395086 + AT_rich Low_complexity Low_complexity 1 33 0 5 1331 748 238 87 10 chr12 97862486 97862694 -23394836 + URR1B DNA MER1_type 2 225 0 5 1331 9162 103 7 4 chr12 97863262 97864622 -23392908 - L1_Mur1 LINE L1 -194 5692 4329 5 1331 2717 159 13 9 chr12 97864623 97865073 -23392457 + Lx3A LINE L1 6527 6978 -3 5 1331 563 280 38 0 chr12 97865167 97865299 -23392231 - B1_Mus1 SINE Alu -7 141 5 5 1331 23 0 0 0 chr12 97866717 97866740 -23390790 + AT_rich Low_complexity Low_complexity 1 23 0 5 1331 25 0 0 0 chr12 97867689 97867714 -23389816 + AT_rich Low_complexity Low_complexity 1 25 0 5 1331 558 146 0 0 chr12 97867972 97868082 -23389448 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 1331 576 62 0 0 chr12 97868082 97868163 -23389367 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 1331 1159 171 0 51 chr12 97868252 97868505 -23389025 + L1_Mur3 LINE L1 2658 2897 -2983 5 1331 4518 156 4 3 chr12 97868511 97869281 -23388249 + Lx2 LINE L1 6226 6996 -1 5 1331 855 156 17 8 chr12 97869355 97869578 -23387952 - Lx2B LINE L1 -549 6451 6174 5 1331 829 239 24 89 chr12 97869588 97869924 -23387606 + Lx7 LINE L1 7380 7693 -3 5 1331 24 77 0 0 chr12 97869945 97869997 -23387533 + AT_rich Low_complexity Low_complexity 1 52 0 5 1331 21 0 0 0 chr12 97870263 97870284 -23387246 + AT_rich Low_complexity Low_complexity 1 21 0 5 1331 204 125 0 0 chr12 97870424 97870456 -23387074 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 5 1331 631 298 339 3 chr12 97870614 97870924 -23386606 - MTD LTR MaLR -5 414 1 5 1331 329 332 80 11 chr12 97870938 97871215 -23386315 + L1M4 LINE L1 3721 4014 -2132 5 1331 486 70 0 0 chr12 97871523 97871594 -23385936 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1331 643 245 46 25 chr12 97871609 97871893 -23385637 - L1_Mur3 LINE L1 -4182 1698 1409 5 1331 34 24 0 0 chr12 97872156 97872197 -23385333 + AT_rich Low_complexity Low_complexity 1 41 0 5 1331 352 333 78 47 chr12 97872917 97873450 -23384080 + L1MA6 LINE L1 5414 5958 -333 5 1331 495 0 0 0 chr12 97873450 97873505 -23384025 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1331 252 0 0 0 chr12 97873505 97873532 -23383998 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1331 352 332 77 46 chr12 97873532 97873587 -23383943 + L1MA6 LINE L1 5959 6019 -281 5 1331 2949 85 41 39 chr12 97874053 97874495 -23383035 - L1_Mus1 LINE L1 -1 6566 6124 5 1331 243 0 0 0 chr12 97874711 97874738 -23382792 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1331 26 0 0 0 chr12 97876368 97876394 -23381136 + AT_rich Low_complexity Low_complexity 1 26 0 5 1331 23 0 0 0 chr12 97877316 97877339 -23380191 + AT_rich Low_complexity Low_complexity 1 23 0 5 1331 27 62 0 0 chr12 97877561 97877609 -23379921 + AT_rich Low_complexity Low_complexity 1 48 0 5 1331 381 280 92 64 chr12 97878359 97878377 -23379153 - RSINE1 SINE B4 0 165 150 5 1331 514 75 12 12 chr12 97878377 97878458 -23379072 + (TATG)n Simple_repeat Simple_repeat 2 82 0 5 1331 381 280 92 64 chr12 97878458 97878580 -23378950 - RSINE1 SINE B4 -16 149 21 5 1331 7948 131 36 6 chr12 97878582 97880176 -23377354 + Lx3A LINE L1 5345 6975 -6 5 1331 305 349 54 23 chr12 97880654 97880783 -23376747 + ID_B1 SINE B4 32 164 -60 5 1331 265 316 71 10 chr12 97880718 97880817 -23376713 + PB1D10 SINE Alu 12 116 -1 5 1331 489 368 37 26 chr12 97881561 97881829 -23375701 + B4A SINE B4 21 291 -1 5 1331 1206 79 115 5 chr12 97882169 97882360 -23375170 + MusHAL1 LINE L1 1627 1838 -874 5 1331 3051 189 65 28 chr12 97882772 97883720 -23373810 + Lx5 LINE L1 5119 6113 -937 5 1331 1652 270 36 78 chr12 97883724 97884355 -23373175 + RMER19C LTR ERVK 1 605 -6 5 1331 1658 259 60 16 chr12 97884360 97884846 -23372684 + Lx5 LINE L1 6119 6625 -425 5 1331 1034 239 29 11 chr12 97884889 97885168 -23372362 + Lx5 LINE L1 6767 7050 0 5 1331 521 315 45 10 chr12 97886630 97886829 -23370701 - B3 SINE B2 -9 207 2 5 1331 1209 68 17 0 chr12 97887243 97887420 -23370110 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 1331 2377 13 269 0 chr12 97888101 97888413 -23369117 + MTA_Mm LTR MaLR 1 396 0 6 1331 8895 45 2 1 chr12 97888413 97889510 -23368020 + MTA_Mm-int LTR MaLR 1 1098 0 6 1331 3508 13 2 0 chr12 97889510 97889905 -23367625 + MTA_Mm LTR MaLR 1 396 0 6 1331 2373 259 8 2 chr12 97892157 97892680 -23364850 + Lx5 LINE L1 6522 7047 -3 6 1331 23 0 0 0 chr12 97893703 97893726 -23363804 + AT_rich Low_complexity Low_complexity 1 23 0 6 1331 411 162 0 0 chr12 97894006 97894086 -23363444 + A-rich Low_complexity Low_complexity 1 80 0 6 1331 21429 82 7 6 chr12 97894344 97897313 -23360217 + L1_Mm LINE L1 2579 5550 -333 6 1331 1738 94 4 23 chr12 97897313 97897575 -23359955 + L1Md_F2 LINE L1 6326 6582 0 6 1331 188 290 75 11 chr12 97897882 97897976 -23359554 - L3 LINE CR1 -1167 3322 3223 6 1331 297 0 0 0 chr12 97898212 97898245 -23359285 + (CAA)n Simple_repeat Simple_repeat 2 34 0 6 1331 343 314 50 28 chr12 97898410 97898551 -23358979 + MTD LTR MaLR 13 156 -263 6 1331 414 0 0 0 chr12 97898565 97898611 -23358919 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1331 744 323 13 54 chr12 97898717 97898956 -23358574 + ORR1E LTR MaLR 9 237 -122 6 1331 968 112 18 6 chr12 97899003 97899173 -23358357 - L1_Mus3 LINE L1 -13 6625 6454 6 1331 3661 82 0 6 chr12 97899173 97899674 -23357856 + L1_Mus3 LINE L1 5772 6269 -369 6 1331 1989 267 35 17 chr12 97900085 97900622 -23356908 - Lx5 LINE L1 0 7050 6504 6 1331 1944 244 102 32 chr12 97900622 97901220 -23356310 + Lx5 LINE L1 5842 6481 -569 6 1331 287 320 28 51 chr12 97901431 97901609 -23355921 + L1MA6 LINE L1 6013 6186 -114 6 1331 26 0 0 0 chr12 97901667 97901693 -23355837 + AT_rich Low_complexity Low_complexity 1 26 0 6 1331 571 116 18 0 chr12 97902382 97902494 -23355036 + (GA)n Simple_repeat Simple_repeat 2 115 0 6 1331 420 322 118 43 chr12 97902793 97903098 -23354432 - MTE2a LTR MaLR -38 341 14 6 1331 311 277 52 86 chr12 97903307 97903540 -23353990 - Charlie2a DNA MER1_type -980 1881 1657 6 1331 282 384 62 62 chr12 97903726 97903887 -23353643 + RSINE1 SINE B4 5 165 0 6 1331 5443 92 21 16 chr12 97903901 97904700 -23352830 - Lx3_Mus LINE L1 -2 7007 6205 6 1331 4222 104 11 0 chr12 97904700 97905247 -23352283 + L1_Mur1 LINE L1 4743 5290 -596 6 1331 366 23 0 0 chr12 97905247 97905290 -23352240 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 6 1331 4222 104 11 0 chr12 97905290 97905366 -23352164 + L1_Mur1 LINE L1 5291 5371 -515 6 1331 23 54 0 0 chr12 97906007 97906044 -23351486 + AT_rich Low_complexity Low_complexity 1 37 0 6 1331 26 0 0 0 chr12 97906535 97906561 -23350969 + AT_rich Low_complexity Low_complexity 1 26 0 6 1331 247 325 62 0 chr12 97907102 97907182 -23350348 + B1F1 SINE Alu 25 109 -40 6 1331 3729 35 5 0 chr12 97907241 97907675 -23349855 - RLTR10C LTR ERVK 0 436 1 6 1331 21 0 0 0 chr12 97909318 97909339 -23348191 + AT_rich Low_complexity Low_complexity 1 21 0 6 1331 182 273 37 61 chr12 97909562 97909644 -23347886 - L2 LINE L2 -1019 2400 2321 6 1331 183 156 0 0 chr12 97910448 97910480 -23347050 + CT-rich Low_complexity Low_complexity 4 35 0 6 1332 21 0 0 0 chr12 97910825 97910846 -23346684 + AT_rich Low_complexity Low_complexity 1 21 0 6 1332 203 79 0 26 chr12 97913920 97913959 -23343571 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 6 1332 6197 226 54 8 chr12 97914007 97916656 -23340874 - Lx5 LINE L1 -1 7049 4266 6 1332 1304 135 10 18 chr12 97916729 97916954 -23340576 + MTB_Mm LTR MaLR 1 212 -167 6 1332 2034 107 3 3 chr12 97916954 97917254 -23340276 - L1_Mus3 LINE L1 -818 5065 4766 6 1332 5360 150 34 28 chr12 97917255 97918765 -23338765 + L1_Mus3 LINE L1 5120 6631 -7 6 1332 633 117 19 46 chr12 97918790 97918898 -23338632 + MTB_Mm LTR MaLR 182 286 -114 6 1332 2711 194 46 3 chr12 97918898 97919488 -23338042 - Lx5 LINE L1 -1660 4217 3603 6 1332 890 191 24 19 chr12 97919490 97919703 -23337827 - Lx5 LINE L1 -2526 3351 3138 6 1332 2537 172 4 7 chr12 97919697 97920153 -23337377 - L1_Mm LINE L1 -227 5656 5202 6 1332 1066 118 6 11 chr12 97920321 97920501 -23337029 + (TTC)n Simple_repeat Simple_repeat 2 180 0 6 1332 322 333 71 71 chr12 97921312 97921496 -23336034 + MIR SINE MIR 47 230 -32 6 1332 1240 122 16 11 chr12 97921721 97921912 -23335618 - B2_Mm2 SINE B2 -2 193 2 6 1332 952 240 15 0 chr12 97922522 97922722 -23334808 - RMER15 LTR ERVL -202 373 171 6 1332 1623 50 0 0 chr12 97922960 97923161 -23334369 + L1Md_T LINE L1 6371 6571 -11 6 1332 234 0 0 0 chr12 97923164 97923190 -23334340 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1332 470 61 15 0 chr12 97926296 97926362 -23331168 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1332 405 0 0 0 chr12 97926470 97926515 -23331015 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1332 956 312 121 11 chr12 97926744 97927232 -23330298 - Lx6 LINE L1 -65 7395 6484 6 1332 241 328 88 61 chr12 97927372 97927635 -23329895 + B4A SINE B4 4 273 -19 6 1332 279 0 0 0 chr12 97927695 97927726 -23329804 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1332 405 0 0 0 chr12 97927726 97927770 -23329760 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1332 240 200 0 0 chr12 97929557 97929617 -23327913 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1332 417 246 0 0 chr12 97929724 97929858 -23327672 + (TG)n Simple_repeat Simple_repeat 1 134 0 6 1332 3456 20 5 0 chr12 97929923 97930317 -23327213 - MTA_Mm LTR MaLR 0 396 1 6 1332 453 283 43 70 chr12 97930898 97930924 -23326606 - B3A SINE B2 -15 183 159 6 1332 468 0 0 0 chr12 97930924 97930976 -23326554 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1332 453 283 43 70 chr12 97930976 97931135 -23326395 - B3A SINE B2 -40 158 3 6 1332 236 313 6 53 chr12 97931691 97931860 -23325670 + GA-rich Low_complexity Low_complexity 4 164 0 6 1332 225 345 11 33 chr12 97931874 97931910 -23325620 + polypurine Low_complexity Low_complexity 4 39 0 6 1332 594 75 0 0 chr12 97931910 97931990 -23325540 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 6 1332 522 316 15 22 chr12 97931990 97932473 -23325057 + GA-rich Low_complexity Low_complexity 1 479 0 6 1332 206 418 19 12 chr12 97932367 97932527 -23325003 + G-rich Low_complexity Low_complexity 5 165 0 6 1332 37 52 0 0 chr12 97933079 97933137 -23324393 + AT_rich Low_complexity Low_complexity 1 58 0 6 1332 411 119 0 0 chr12 97934164 97934231 -23323299 + (CATA)n Simple_repeat Simple_repeat 4 70 0 6 1332 238 371 105 0 chr12 97934568 97934673 -23322857 + MER20 DNA MER1_type 95 210 -9 6 1332 508 344 29 48 chr12 97935893 97936208 -23321322 - ORR1E LTR MaLR -57 313 18 6 1332 1481 158 61 87 chr12 97936220 97936660 -23320870 - RMER17C LTR ERVK -523 435 15 6 1332 222 116 0 0 chr12 97936697 97936740 -23320790 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1332 742 207 34 11 chr12 97936865 97937041 -23320489 + URR1A DNA MER1_type 47 226 0 6 1332 1976 216 228 16 chr12 97937662 97938268 -23319262 - Lx3C LINE L1 -2 6974 6241 6 1332 2171 169 49 18 chr12 97938281 97938749 -23318781 - Lx3C LINE L1 -834 6142 5685 6 1332 19769 155 78 5 chr12 97939375 97944946 -23312584 - L1Md_F2 LINE L1 0 6585 610 6 1332 536 29 14 0 chr12 97945213 97945283 -23312247 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1332 22 0 0 0 chr12 97946054 97946076 -23311454 + AT_rich Low_complexity Low_complexity 1 22 0 6 1332 228 312 0 13 chr12 97948164 97948242 -23309288 + GA-rich Low_complexity Low_complexity 3 79 0 6 1332 402 319 101 107 chr12 97948407 97948762 -23308768 - ORR1E LTR MaLR -6 353 1 6 1332 311 295 0 0 chr12 97948889 97948967 -23308563 - B4A SINE B4 0 292 215 6 1332 439 318 122 45 chr12 97949074 97949295 -23308235 - B4A SINE B4 -14 278 41 6 1332 2905 93 8 0 chr12 97950234 97950631 -23306899 - MTB LTR MaLR 0 400 1 6 1332 1519 331 59 46 chr12 97950740 97950796 -23306734 - Lx8 LINE L1 0 7473 7416 6 1332 1852 69 4 0 chr12 97950796 97951043 -23306487 - L1Md_T LINE L1 -1 6581 6334 6 1332 1519 331 59 46 chr12 97951043 97951884 -23305646 - Lx8 LINE L1 -58 7415 6564 6 1332 589 321 14 14 chr12 97951887 97952102 -23305428 - Lx8 LINE L1 -1037 6436 6222 6 1332 269 203 0 0 chr12 97952572 97952636 -23304894 - L1M2 LINE L1 -931 5360 5297 6 1332 459 298 8 0 chr12 97952666 97952787 -23304743 + Lx8 LINE L1 6991 7112 -361 6 1332 559 264 62 88 chr12 97952881 97953292 -23304238 - L1M2 LINE L1 -1278 4865 4434 6 1332 977 151 36 48 chr12 97955014 97955282 -23302248 - Lx3_Mus LINE L1 -1 7008 6698 6 1332 366 284 17 17 chr12 97955747 97955865 -23301665 - L1MC4 LINE L1 -688 7354 7237 6 1332 186 43 0 0 chr12 97956010 97956033 -23301497 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1332 180 0 0 0 chr12 97956839 97956859 -23300671 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1332 261 0 0 0 chr12 97956859 97956887 -23300643 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1332 219 69 0 0 chr12 97957965 97957994 -23299536 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 6 1332 1264 44 0 0 chr12 97957994 97958152 -23299378 - B2_Mm1t SINE B2 -33 160 3 6 1332 1718 226 55 30 chr12 97959171 97959664 -23297866 - RLTR16 LTR ERVK 0 505 1 6 1332 1171 290 32 24 chr12 97960029 97960368 -23297162 + MTD LTR MaLR 50 391 -28 6 1332 21 71 0 0 chr12 97960527 97960569 -23296961 + AT_rich Low_complexity Low_complexity 1 42 0 6 1332 21 0 0 0 chr12 97960628 97960649 -23296881 + AT_rich Low_complexity Low_complexity 1 21 0 6 1332 356 347 133 43 chr12 97960720 97961208 -23296322 - L1M4 LINE L1 -362 5822 5291 6 1332 289 21 83 0 chr12 97962180 97962228 -23295302 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1332 231 114 0 0 chr12 97963232 97963267 -23294263 + (TTC)n Simple_repeat Simple_repeat 2 36 0 6 1332 302 98 20 0 chr12 97964189 97964240 -23293290 + (TATG)n Simple_repeat Simple_repeat 3 54 0 6 1332 266 318 26 26 chr12 97964684 97964797 -23292733 + B3 SINE B2 104 216 0 6 1332 22 56 0 0 chr12 97964797 97964833 -23292697 + AT_rich Low_complexity Low_complexity 1 36 0 6 1332 423 138 0 0 chr12 97965419 97965506 -23292024 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 6 1332 57 0 0 0 chr12 97968640 97968697 -23288833 + AT_rich Low_complexity Low_complexity 1 57 0 6 1332 6701 133 20 7 chr12 97968702 97968963 -23288567 + Lx LINE L1 5588 5847 -807 6 1332 2554 81 0 39 chr12 97968963 97969323 -23288207 - ORR1A1 LTR MaLR 0 346 1 6 1332 6701 133 20 7 chr12 97969323 97970108 -23287422 + Lx LINE L1 5848 6648 -6 6 1332 826 322 92 49 chr12 97970228 97971350 -23286180 + Lx8 LINE L1 5305 6518 -955 7 1332 2770 66 3 3 chr12 97971378 97971742 -23285788 - L1_Mus2 LINE L1 0 6566 6203 7 1332 21 0 0 0 chr12 97972870 97972891 -23284639 + AT_rich Low_complexity Low_complexity 1 21 0 7 1332 533 144 92 39 chr12 97973062 97973192 -23284338 - Lx3_Mus LINE L1 0 7009 6873 7 1332 22 35 0 0 chr12 97973602 97973631 -23283899 + AT_rich Low_complexity Low_complexity 1 29 0 7 1332 1024 142 6 51 chr12 97973828 97974006 -23283524 + B2_Mm2 SINE B2 2 171 -24 7 1332 28 29 0 0 chr12 97974059 97974094 -23283436 + AT_rich Low_complexity Low_complexity 1 35 0 7 1332 21 36 0 0 chr12 97974212 97974240 -23283290 + AT_rich Low_complexity Low_complexity 1 28 0 7 1332 323 350 67 50 chr12 97975482 97975858 -23281672 + L1M5 LINE L1 2742 3123 -3023 7 1332 1669 229 115 70 chr12 97975869 97976290 -23281240 + Lx9 LINE L1 6862 7331 -313 7 1332 3909 109 50 26 chr12 97976290 97976911 -23280619 + Lx3A LINE L1 6323 6966 -15 7 1332 216 67 0 0 chr12 97976911 97976941 -23280589 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 7 1332 3909 109 50 26 chr12 97976941 97976961 -23280569 + Lx3A LINE L1 6967 6979 -2 7 1332 1669 229 115 70 chr12 97976961 97977150 -23280380 + Lx9 LINE L1 7332 7499 -145 7 1332 1059 87 37 0 chr12 97977199 97977360 -23280170 + RLTR44C LTR ERVK 30 196 -306 7 1332 340 345 102 8 chr12 97978118 97978372 -23279158 + L1M5 LINE L1 4414 4691 -1455 7 1332 4957 91 6 3 chr12 97979570 97980252 -23277278 + L1_Mus1 LINE L1 5880 6563 -4 7 1332 278 212 18 24 chr12 97980386 97980550 -23276980 + (TA)n Simple_repeat Simple_repeat 2 164 0 7 1332 2223 258 196 72 chr12 97980614 97981819 -23275711 + RLTR22_Mus LTR ERVK 1 1270 -538 7 1332 192 97 0 0 chr12 97981819 97981850 -23275680 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1332 2223 258 196 72 chr12 97981850 97982222 -23275308 + RLTR22_Mus LTR ERVK 1271 1773 -35 7 1332 1026 216 172 41 chr12 97982473 97982792 -23274738 + RLTR11A LTR ERVK 1 361 -167 7 1332 236 271 43 0 chr12 97982971 97983041 -23274489 + B1F SINE Alu 52 124 -25 7 1332 312 278 108 20 chr12 97983113 97983308 -23274222 + L1MD LINE L1 3357 3568 -2578 7 1332 2733 225 65 30 chr12 97983312 97984022 -23273508 + Lx9 LINE L1 6769 7503 -141 7 1332 390 199 75 7 chr12 97984158 97984305 -23273225 + Lx9 LINE L1 7486 7642 -2 7 1332 440 207 9 0 chr12 97984710 97984826 -23272704 + (TG)n Simple_repeat Simple_repeat 2 118 0 7 1332 243 305 93 19 chr12 97984920 97985027 -23272503 - B3 SINE B2 0 216 102 7 1332 3885 75 18 40 chr12 97985662 97986216 -23271314 + L1Md_F2 LINE L1 6027 6568 -14 7 1332 25 65 0 0 chr12 97987045 97987091 -23270439 + AT_rich Low_complexity Low_complexity 1 46 0 7 1332 23 33 0 0 chr12 97988267 97988297 -23269233 + AT_rich Low_complexity Low_complexity 1 30 0 7 1332 235 288 0 0 chr12 97988566 97988632 -23268898 + (TATG)n Simple_repeat Simple_repeat 1 66 0 7 1332 434 328 130 31 chr12 97988633 97988894 -23268636 - B4 SINE B4 -1 291 5 7 1332 461 148 9 35 chr12 97988916 97989034 -23268496 - L1_Mur1 LINE L1 -570 5307 5198 7 1332 384 200 33 42 chr12 97989051 97989171 -23268359 + Lx3C LINE L1 6856 6974 -2 7 1332 246 62 0 0 chr12 97989172 97989204 -23268326 + (GAA)n Simple_repeat Simple_repeat 2 33 0 7 1332 1749 205 35 49 chr12 97989439 97989864 -23267666 + MTC LTR MaLR 3 421 0 7 1332 305 299 106 26 chr12 97990265 97990416 -23267114 - RLTR25A LTR ERVK 0 1103 941 7 1332 430 279 51 114 chr12 97991195 97991527 -23266003 - RLTR25A LTR ERVK -791 312 2 7 1332 3098 107 46 44 chr12 97991981 97992481 -23265049 - L1_Mus4 LINE L1 -9 6627 6127 7 1332 319 276 24 24 chr12 97992492 97992618 -23264912 - ETnERV3-int LTR ERVK -554 5254 5129 7 1332 21 36 0 0 chr12 97993428 97993456 -23264074 + AT_rich Low_complexity Low_complexity 1 28 0 7 1332 611 233 31 78 chr12 97993553 97993744 -23263786 + B2_Mm2 SINE B2 2 183 -12 7 1332 891 167 29 0 chr12 97994316 97994490 -23263040 + Lx LINE L1 6462 6640 -14 7 1332 471 301 58 142 chr12 97994503 97994898 -23262632 + MLT1B LTR MaLR 11 372 -18 7 1332 22 35 0 0 chr12 97995227 97995256 -23262274 + AT_rich Low_complexity Low_complexity 1 29 0 7 1332 263 113 19 0 chr12 97996866 97996919 -23260611 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 7 1332 180 77 0 0 chr12 97997869 97997895 -23259635 + (CAAAG)n Simple_repeat Simple_repeat 2 27 0 7 1332 1271 7 0 0 chr12 97998210 97998360 -23259170 - L1Md_A LINE L1 0 6582 6433 7 1332 403 365 116 40 chr12 97998648 97999122 -23258408 - L1MD3 LINE L1 -379 7616 7107 7 1332 24 53 0 0 chr12 97999239 97999277 -23258253 + AT_rich Low_complexity Low_complexity 1 38 0 7 1332 2831 71 53 0 chr12 97999338 97999718 -23257812 - MTB LTR MaLR 0 400 1 7 1332 1195 61 0 0 chr12 97999752 97999899 -23257631 + B1_Mm SINE Alu 1 147 0 7 1332 402 39 0 0 chr12 97999899 97999951 -23257579 + (A)n Simple_repeat Simple_repeat 1 52 0 7 1332 180 0 0 0 chr12 97999962 97999982 -23257548 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1332 217 174 0 21 chr12 98000102 98000149 -23257381 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 1 1332 374 293 19 103 chr12 98000556 98000712 -23256818 - B3A SINE B2 -55 143 1 2 1332 748 37 0 9 chr12 98000864 98000974 -23256556 - L1Md_F3 LINE L1 0 6584 6476 3 1332 345 47 0 0 chr12 98001153 98001196 -23256334 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 4 1332 1862 226 27 17 chr12 98001917 98002326 -23255204 - MTC LTR MaLR -6 415 3 5 1332 711 118 0 0 chr12 98002872 98003007 -23254523 + (TC)n Simple_repeat Simple_repeat 1 135 0 6 1332 869 49 138 0 chr12 98003881 98004004 -23253526 - B1_Mus1 SINE Alu -8 140 1 7 1332 1014 30 0 0 chr12 98004109 98004240 -23253290 + L1Md_T LINE L1 6452 6582 0 8 1332 21 57 0 0 chr12 98004300 98004335 -23253195 + AT_rich Low_complexity Low_complexity 1 35 0 9 1332 1033 314 52 20 chr12 98004372 98004775 -23252755 - Lx6 LINE L1 -100 7360 6945 1 1332 3451 94 8 5 chr12 98004787 98005289 -23252241 - RLTR1C LTR ERV1 0 507 1 1 1332 345 157 0 0 chr12 98005290 98005341 -23252189 - Lx5 LINE L1 -493 6557 6507 1 1332 288 0 0 0 chr12 98005382 98005414 -23252116 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1332 259 281 107 38 chr12 98005445 98005604 -23251926 - L1MD3 LINE L1 -358 7637 7468 1 1332 1254 28 0 0 chr12 98006048 98006193 -23251337 + L1Md_A LINE L1 5442 5586 -297 1 1332 8706 16 1 0 chr12 98006193 98007188 -23250342 + L1Md_A LINE L1 5587 6582 0 1 1332 1076 342 109 33 chr12 98007321 98008108 -23249422 - Charlie11 DNA MER1_type -514 1682 836 1 1332 212 322 0 0 chr12 98008452 98008511 -23249019 - ID4 SINE ID -22 61 3 1 1332 290 363 35 65 chr12 98011646 98011876 -23245654 + MLT1D LTR MaLR 261 483 -22 1 1332 239 393 0 0 chr12 98012363 98012452 -23245078 - LTR16C LTR ERVL -44 445 357 1 1332 525 38 63 0 chr12 98013148 98013227 -23244303 - L1Md_F3 LINE L1 -1 6583 6500 2 1332 645 133 0 0 chr12 98013350 98013485 -23244045 + (GA)n Simple_repeat Simple_repeat 2 136 0 2 1332 1666 146 9 28 chr12 98013563 98013798 -23243732 + MT-int LTR MaLR 748 981 -117 2 1332 1276 91 16 0 chr12 98013798 98013984 -23243546 + B2_Mm1t SINE B2 2 190 -3 2 1332 1666 146 9 28 chr12 98013984 98014065 -23243465 + MT-int LTR MaLR 982 1058 -40 2 1332 288 0 0 0 chr12 98014128 98014160 -23243370 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1332 1868 189 244 14 chr12 98014244 98014801 -23242729 - RMER6C LTR ERVK 0 690 6 2 1332 21 71 0 0 chr12 98015058 98015100 -23242430 + AT_rich Low_complexity Low_complexity 1 42 0 2 1332 24 0 0 0 chr12 98015238 98015262 -23242268 + AT_rich Low_complexity Low_complexity 1 24 0 2 1332 25 75 0 0 chr12 98015718 98015771 -23241759 + AT_rich Low_complexity Low_complexity 1 53 0 2 1332 228 100 0 0 chr12 98015991 98016031 -23241499 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 2 1332 572 326 59 58 chr12 98016104 98016811 -23240719 - L1_Rod LINE L1 -11 5836 5129 3 1332 966 264 96 48 chr12 98016852 98017226 -23240304 + Lx9 LINE L1 7241 7632 -12 3 1332 265 351 0 0 chr12 98017345 98017439 -23240091 + Lx9 LINE L1 7215 7308 -336 3 1332 243 57 0 0 chr12 98017940 98017949 -23239581 + (CA)n Simple_repeat Simple_repeat 2 10 0 3 1332 279 0 0 0 chr12 98017949 98017980 -23239550 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1332 243 57 0 0 chr12 98017980 98018005 -23239525 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1332 209 111 44 0 chr12 98017996 98018041 -23239489 + (CAGAGA)n Simple_repeat Simple_repeat 6 52 0 3 1332 3638 29 11 32 chr12 98018107 98018396 -23239134 + L1Md_F3 LINE L1 6132 6419 -165 3 1332 1391 75 16 0 chr12 98018396 98018584 -23238946 + B2_Mm1a SINE B2 1 191 -2 3 1332 3638 29 11 32 chr12 98018584 98018755 -23238775 + L1Md_F3 LINE L1 6420 6582 -2 3 1332 9542 231 84 80 chr12 98019049 98020830 -23236700 + Lx4B LINE L1 879 2699 -3178 3 1332 4421 122 10 10 chr12 98020830 98021531 -23235999 + L1_Mus4 LINE L1 5924 6624 -12 4 1332 567 0 0 0 chr12 98021532 98021595 -23235935 + (GAA)n Simple_repeat Simple_repeat 1 63 0 4 1332 9542 230 85 88 chr12 98021595 98024718 -23232812 + Lx4B LINE L1 2700 5828 -49 3 1332 1646 91 0 0 chr12 98024718 98024948 -23232582 + L1Md_F2 LINE L1 6348 6577 -5 4 1332 9542 208 61 17 chr12 98024948 98026117 -23231413 + Lx4B LINE L1 5829 7055 -3 3 1332 225 0 0 0 chr12 98026227 98026252 -23231278 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 1332 251 130 0 18 chr12 98026252 98026307 -23231223 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1332 198 150 0 0 chr12 98027368 98027408 -23230122 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 4 1332 310 252 29 19 chr12 98028631 98028736 -23228794 + CT-rich Low_complexity Low_complexity 2 107 0 4 1332 774 299 17 26 chr12 98031080 98031313 -23226217 - Lx8 LINE L1 -137 7336 7106 4 1332 377 298 26 40 chr12 98031968 98032192 -23225338 + Lx8 LINE L1 5741 5964 -1680 4 1332 3007 30 6 0 chr12 98032760 98033121 -23224409 - L1Md_F3 LINE L1 -3 6581 6219 4 1332 450 36 0 0 chr12 98033263 98033319 -23224211 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1332 501 326 54 0 chr12 98034429 98034613 -23222917 + Lx8 LINE L1 6828 7021 -452 4 1332 1682 196 132 100 chr12 98034769 98035358 -23222172 - RMER6C LTR ERVK 0 690 83 5 1332 234 0 0 0 chr12 98035425 98035451 -23222079 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1332 26 30 0 0 chr12 98036166 98036199 -23221331 + AT_rich Low_complexity Low_complexity 1 33 0 5 1332 1385 183 35 42 chr12 98036672 98037049 -23220481 + L1_Mur3 LINE L1 2802 3175 -2705 5 1332 1955 246 72 4 chr12 98037049 98037560 -23219970 + Lx5 LINE L1 6497 7042 -8 5 1332 464 150 97 9 chr12 98037610 98037724 -23219806 + L1_Mur3 LINE L1 3238 3361 -2519 5 1332 33 25 0 0 chr12 98037767 98037807 -23219723 + AT_rich Low_complexity Low_complexity 1 40 0 5 1332 8370 118 10 8 chr12 98037807 98039065 -23218465 - Lx3A LINE L1 -10 6971 5711 5 1332 1550 186 18 3 chr12 98039065 98039394 -23218136 + L1_Mur3 LINE L1 3436 3769 -2111 5 1332 2648 295 7 14 chr12 98039373 98040111 -23217419 + Lx6 LINE L1 6560 7292 -168 5 1332 1115 56 14 0 chr12 98040154 98040297 -23217233 + B1_Mm SINE Alu 2 146 -1 5 1332 206 32 0 31 chr12 98040552 98040584 -23216946 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1332 21 36 0 0 chr12 98040710 98040738 -23216792 + AT_rich Low_complexity Low_complexity 1 28 0 6 1332 3079 33 0 0 chr12 98040838 98041241 -23216289 - L1Md_T LINE L1 0 6582 6216 6 1332 4550 37 0 0 chr12 98041241 98041783 -23215747 + L1Md_T LINE L1 5692 6233 -349 6 1333 600 70 0 0 chr12 98042233 98042319 -23215211 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 6 1333 516 68 0 0 chr12 98042452 98042525 -23215005 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1333 604 368 54 75 chr12 98042549 98042843 -23214687 - B4 SINE B4 -3 289 2 6 1333 21 71 0 0 chr12 98044534 98044576 -23212954 + AT_rich Low_complexity Low_complexity 1 42 0 6 1333 273 271 131 8 chr12 98045284 98045414 -23212116 - MLT2B2 LTR ERVL -248 306 161 6 1333 2991 87 10 10 chr12 98045516 98045933 -23211597 - L1_Mus2 LINE L1 -6 6560 6144 6 1333 760 219 28 6 chr12 98046170 98046349 -23211181 - B2_Mm2 SINE B2 -11 184 2 6 1333 243 0 0 0 chr12 98046349 98046376 -23211154 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 7 1333 257 109 18 0 chr12 98047233 98047288 -23210242 + (TTTTTG)n Simple_repeat Simple_repeat 3 58 0 7 1333 4048 140 53 11 chr12 98048403 98049106 -23208424 - Lx LINE L1 -6 6648 5917 7 1333 3463 180 40 3 chr12 98049106 98049784 -23207746 + Lx LINE L1 5165 5867 -16 7 1333 272 0 61 20 chr12 98049793 98049842 -23207688 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 7 1333 285 191 16 0 chr12 98049844 98049907 -23207623 + L1_Mus4 LINE L1 5862 5925 -711 7 1333 206 167 0 20 chr12 98050343 98050392 -23207138 + T-rich Low_complexity Low_complexity 3 50 0 7 1333 258 81 0 0 chr12 98050439 98050476 -23207054 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1333 22 0 0 0 chr12 98051053 98051075 -23206455 + AT_rich Low_complexity Low_complexity 1 22 0 7 1333 365 344 23 8 chr12 98051287 98051419 -23206111 - ID_B1 SINE B4 -6 218 85 7 1333 2081 129 36 11 chr12 98052394 98052754 -23204776 + Lx LINE L1 6285 6653 -1 7 1333 879 244 39 48 chr12 98052865 98053201 -23204329 - Lx7 LINE L1 0 7696 7364 7 1333 213 175 0 0 chr12 98053214 98053254 -23204276 + (CATA)n Simple_repeat Simple_repeat 4 43 0 8 1333 319 175 0 0 chr12 98053254 98053311 -23204219 + Lx7 LINE L1 5815 5871 -1825 8 1333 3016 221 38 40 chr12 98053347 98053582 -23203948 - L1_Mur3 LINE L1 -656 5224 4985 8 1333 213 39 0 0 chr12 98053582 98053608 -23203922 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1333 3016 221 38 40 chr12 98053608 98054173 -23203357 - L1_Mur3 LINE L1 -896 4984 4426 8 1333 279 0 0 0 chr12 98054173 98054204 -23203326 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1333 3016 221 38 40 chr12 98054204 98054282 -23203248 - L1_Mur3 LINE L1 -1455 4425 4348 8 1333 747 325 27 62 chr12 98054274 98054642 -23202888 - L1_Mur3 LINE L1 -6920 808 454 8 1333 1831 246 74 23 chr12 98054629 98055142 -23202388 - L1_Mur3 LINE L1 -7127 601 63 8 1333 1721 270 50 49 chr12 98055154 98055949 -23201581 - L1_Rod LINE L1 -3584 2263 1471 8 1333 315 0 0 0 chr12 98055949 98055984 -23201546 + (TTA)n Simple_repeat Simple_repeat 2 36 0 8 1333 1721 270 50 49 chr12 98055984 98056064 -23201466 - L1_Rod LINE L1 -4377 1470 1387 8 1333 1823 258 60 33 chr12 98056069 98056414 -23201116 + RLTR18B LTR ERVK 6 374 -138 8 1333 3201 71 7 2 chr12 98056414 98056826 -23200704 + L1_Mus1 LINE L1 6153 6566 -1 8 1333 1823 258 60 33 chr12 98056826 98056965 -23200565 + RLTR18B LTR ERVK 375 503 -9 8 1333 307 273 108 37 chr12 98056982 98057195 -23200335 - L1_Rod LINE L1 -4459 1388 1162 8 1333 679 318 30 7 chr12 98057351 98057590 -23199940 - MTE-int LTR MaLR -395 1185 997 8 1333 986 287 94 42 chr12 98057590 98057994 -23199536 + MTE2a-int LTR MaLR 1155 1579 -1 9 1333 783 263 65 119 chr12 98058000 98058337 -23199193 + MTE2a LTR MaLR 6 324 -55 9 1333 393 22 0 0 chr12 98058337 98058383 -23199147 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 9 1333 224 310 84 0 chr12 98058768 98058839 -23198691 + ID2 SINE ID 6 82 -1 9 1333 712 139 14 14 chr12 98058839 98058938 -23198592 + polypurine Low_complexity Low_complexity 1 101 0 9 1333 1228 79 11 0 chr12 98058938 98059116 -23198414 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1333 712 139 14 14 chr12 98059116 98059155 -23198375 + polypurine Low_complexity Low_complexity 102 139 0 9 1333 210 157 0 56 chr12 98059162 98059216 -23198314 + (CAGA)n Simple_repeat Simple_repeat 3 53 0 9 1333 204 115 0 76 chr12 98059224 98059290 -23198240 + (CAGAGA)n Simple_repeat Simple_repeat 4 64 0 9 1333 423 0 0 0 chr12 98059906 98059953 -23197577 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1333 258 32 0 0 chr12 98060027 98060058 -23197472 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1333 231 186 0 17 chr12 98061390 98061450 -23196080 - Lx2B LINE L1 -9 6991 6933 1 1333 22 56 0 0 chr12 98061729 98061765 -23195765 + AT_rich Low_complexity Low_complexity 1 36 0 1 1333 295 257 35 17 chr12 98062893 98063008 -23194522 + (CATATA)n Simple_repeat Simple_repeat 1 117 0 1 1333 1151 66 72 0 chr12 98063091 98063258 -23194272 + L1Md_F3 LINE L1 6392 6570 -14 1 1333 228 176 32 42 chr12 98063261 98063356 -23194174 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1333 469 382 54 57 chr12 98065453 98065733 -23191797 + B4A SINE B4 10 288 -4 1 1333 305 331 50 0 chr12 98066590 98066729 -23190801 + L1M4b LINE L1 713 858 -6476 1 1333 21 36 0 0 chr12 98067068 98067096 -23190434 + AT_rich Low_complexity Low_complexity 1 28 0 1 1333 22 0 0 0 chr12 98067251 98067273 -23190257 + AT_rich Low_complexity Low_complexity 1 22 0 1 1333 436 246 254 7 chr12 98067576 98067985 -23189545 + L1M4b LINE L1 3554 4063 -2943 1 1333 1112 198 40 0 chr12 98068074 98068326 -23189204 + Lx3C LINE L1 6714 6975 -1 1 1333 22 80 0 0 chr12 98068349 98068399 -23189131 + AT_rich Low_complexity Low_complexity 1 50 0 1 1333 2711 107 34 0 chr12 98068912 98069322 -23188208 - Lx3_Mus LINE L1 -22 6987 6564 1 1333 314 374 120 30 chr12 98069322 98069556 -23187974 - B4 SINE B4 -37 255 1 1 1333 383 207 14 14 chr12 98070688 98070835 -23186695 + (TA)n Simple_repeat Simple_repeat 1 147 0 1 1333 24 0 0 0 chr12 98071590 98071614 -23185916 + AT_rich Low_complexity Low_complexity 1 24 0 1 1333 22 35 0 0 chr12 98071744 98071773 -23185757 + AT_rich Low_complexity Low_complexity 1 29 0 1 1333 1793 332 92 28 chr12 98071962 98073087 -23184443 + Lx8 LINE L1 6098 7294 -179 1 1333 189 0 0 0 chr12 98073314 98073335 -23184195 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1333 777 150 0 0 chr12 98073403 98073550 -23183980 + (TA)n Simple_repeat Simple_repeat 1 147 0 1 1333 743 303 72 43 chr12 98073566 98073911 -23183619 - MLT1A0 LTR MaLR -10 355 1 1 1333 522 0 0 0 chr12 98074386 98074444 -23183086 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1333 2371 45 0 0 chr12 98074454 98074741 -23182789 + L1_Mus1 LINE L1 5587 5873 -694 1 1333 280 337 0 0 chr12 98076136 98076228 -23181302 + CT-rich Low_complexity Low_complexity 3 94 0 1 1333 1930 42 12 4 chr12 98076271 98076513 -23181017 - MMERVK10C-int LTR ERVK -7314 267 24 1 1333 578 38 0 0 chr12 98076513 98076592 -23180938 - L1Md_T LINE L1 0 6582 6504 1 1333 5045 16 0 0 chr12 98076592 98077166 -23180364 + L1_Mm LINE L1 5257 5830 -53 1 1333 3724 37 5 0 chr12 98077197 98077631 -23179899 - RLTR10C LTR ERVK 0 436 1 1 1333 7441 45 2 51 chr12 98077631 98078615 -23178915 - MMERVK10C-int LTR ERVK 0 7581 6646 1 1333 8724 36 0 0 chr12 98078601 98079622 -23177908 - MMERVK10C-int LTR ERVK -1771 5810 4790 1 1333 1317 37 0 0 chr12 98079615 98079776 -23177754 - MMERVK10C-int LTR ERVK -3838 3743 3583 1 1333 21 0 0 0 chr12 98079776 98079797 -23177733 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 37511 52 1 4 chr12 98079824 98086733 -23170797 - L1Md_T LINE L1 0 6585 1 1 1333 543 41 0 14 chr12 98086734 98086808 -23170722 - MMERVK10C-int LTR ERVK -3997 3584 3512 1 1333 1980 5 0 0 chr12 98086789 98087010 -23170520 - RLTR10-int LTR ERVK -1115 872 652 1 1333 361 67 0 0 chr12 98087013 98087058 -23170472 - RLTR10-int LTR ERVK -6405 137 93 1 1333 298 203 0 68 chr12 98087058 98087190 -23170340 + T-rich Low_complexity Low_complexity 2 124 0 1 1333 420 0 0 0 chr12 98087235 98087281 -23170249 - MMERVK10C-int LTR ERVK -7314 267 222 1 1333 242 191 0 0 chr12 98087281 98087323 -23170207 - RLTR27 LTR ERVK -37 272 231 1 1333 1447 61 0 0 chr12 98087323 98087503 -23170027 - MMERVK10C-int LTR ERVK -7401 180 1 1 1333 3304 41 2 128 chr12 98087503 98088002 -23169528 - RLTR10C LTR ERVK 0 436 1 1 1333 3188 156 58 43 chr12 98088002 98088759 -23168771 + Lx2 LINE L1 6113 6998 -2 1 1333 547 327 31 36 chr12 98088770 98088995 -23168535 - Lx8 LINE L1 -1017 6456 6233 1 1333 405 0 0 0 chr12 98089019 98089064 -23168466 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1333 181 200 25 0 chr12 98089685 98089725 -23167805 - L2 LINE L2 -1398 2021 1981 1 1333 725 104 200 0 chr12 98089996 98090111 -23167419 + B1_Mus2 SINE Alu 1 138 -9 1 1333 392 15 30 30 chr12 98090111 98090178 -23167352 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 1 1333 771 195 23 41 chr12 98092446 98092617 -23164913 - B2_Mm2 SINE B2 -17 178 11 1 1333 4121 236 42 27 chr12 98092617 98093595 -23163935 + Lx5 LINE L1 6058 7050 0 1 1333 213 216 59 0 chr12 98093885 98093936 -23163594 + GA-rich Low_complexity Low_complexity 3 56 0 1 1333 1382 138 43 0 chr12 98094864 98095096 -23162434 + RMER6C LTR ERVK 1 242 -448 1 1333 1261 230 46 7 chr12 98095098 98095400 -23162130 + RMER6C LTR ERVK 377 690 0 1 1333 1144 267 76 6 chr12 98095775 98096092 -23161438 - ORR1D1 LTR MaLR -35 339 1 1 1333 945 276 80 6 chr12 98096244 98096569 -23160961 + L1_Mur3 LINE L1 275 623 -7089 1 1333 343 244 122 86 chr12 98096723 98097133 -23160397 - L1M2 LINE L1 -1432 4711 4328 1 1333 846 317 40 30 chr12 98097142 98097674 -23159856 + Lx9 LINE L1 5390 5968 -1676 1 1333 1011 308 69 67 chr12 98097884 98098406 -23159124 + Lx9 LINE L1 6369 6891 -753 1 1333 297 0 0 0 chr12 98098423 98098456 -23159074 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1333 297 75 0 0 chr12 98098740 98098780 -23158750 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1333 232 223 58 40 chr12 98100255 98100428 -23157102 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 1 1333 23 0 0 0 chr12 98100848 98100871 -23156659 + AT_rich Low_complexity Low_complexity 1 23 0 1 1333 23 97 0 0 chr12 98100993 98101065 -23156465 + AT_rich Low_complexity Low_complexity 1 72 0 1 1333 383 70 0 0 chr12 98101245 98101302 -23156228 + RLTR10 LTR ERVK 1 57 -333 1 1333 274 114 0 0 chr12 98101287 98101331 -23156199 + RLTR10 LTR ERVK 249 292 0 1 1333 1559 38 4 83 chr12 98101341 98101570 -23155960 + RLTR10-int LTR ERVK 41 251 -1736 1 1333 3457 37 0 0 chr12 98101567 98101972 -23155558 + RLTR10-int LTR ERVK 588 992 -995 1 1333 465 300 45 49 chr12 98102135 98102422 -23155108 + RLTR10-int LTR ERVK 1309 1594 -5987 1 1333 8143 40 6 6 chr12 98102504 98103501 -23154029 + RLTR10-int LTR ERVK 990 1986 -1 1 1333 2499 53 56 0 chr12 98103501 98103843 -23153687 + RLTR10 LTR ERVK 1 361 -29 1 1333 31 0 0 0 chr12 98104403 98104434 -23153096 + AT_rich Low_complexity Low_complexity 1 31 0 1 1333 1013 274 44 25 chr12 98104590 98104957 -23152573 + ORR1D1 LTR MaLR 1 374 0 1 1333 507 316 64 35 chr12 98105133 98105193 -23152337 - L1MA4 LINE L1 -7 6293 6225 1 1333 263 93 23 0 chr12 98105193 98105236 -23152294 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1333 507 316 64 35 chr12 98105236 98105549 -23151981 - L1MA4 LINE L1 -76 6224 5909 1 1333 23 33 0 0 chr12 98105673 98105703 -23151827 + AT_rich Low_complexity Low_complexity 1 30 0 1 1333 1085 70 7 7 chr12 98105755 98105900 -23151630 - B1_Mm SINE Alu -1 146 2 1 1333 830 362 76 31 chr12 98106007 98106483 -23151047 + MLT2B2 LTR ERVL 1 497 -18 1 1333 200 118 29 0 chr12 98106884 98106918 -23150612 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1333 275 177 47 31 chr12 98108323 98108387 -23149143 + B1_Mus2 SINE Alu 80 144 -3 1 1333 330 115 0 0 chr12 98108387 98108439 -23149091 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1333 407 145 29 0 chr12 98109155 98109224 -23148306 + RMER6A LTR ERVK 1 71 -649 1 1333 1073 229 146 61 chr12 98109218 98109806 -23147724 + RMER6A LTR ERVK 209 716 -4 1 1333 321 287 132 54 chr12 98110275 98110441 -23147089 - B4A SINE B4 0 292 114 1 1333 234 0 0 0 chr12 98111878 98111904 -23145626 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1333 207 69 0 0 chr12 98113149 98113178 -23144352 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1333 285 320 87 49 chr12 98113182 98113756 -23143774 - L1MB7 LINE L1 -25 6159 5564 1 1333 694 105 28 0 chr12 98114170 98114313 -23143217 + (CAGAGA)n Simple_repeat Simple_repeat 2 148 0 1 1333 1504 166 0 11 chr12 98114324 98114593 -23142937 + Lx2 LINE L1 6731 6996 -1 1 1333 231 36 0 0 chr12 98115321 98115349 -23142181 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1333 886 294 87 64 chr12 98116150 98116417 -23141113 + Lx7 LINE L1 7216 7487 -209 1 1333 689 78 8 49 chr12 98116417 98116539 -23140991 - L1Md_F2 LINE L1 -1 6581 6465 1 1333 886 294 87 64 chr12 98116539 98116596 -23140934 + Lx7 LINE L1 7488 7537 -159 1 1333 306 0 0 0 chr12 98116596 98116630 -23140900 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1 1333 886 294 87 64 chr12 98116630 98116773 -23140757 + Lx7 LINE L1 7538 7694 -2 1 1333 3374 253 78 14 chr12 98118275 98119288 -23138242 + Lx9 LINE L1 6549 7626 -18 1 1333 183 231 96 0 chr12 98119798 98119850 -23137680 - MIRb SINE MIR -17 251 195 1 1333 21 0 0 0 chr12 98120277 98120298 -23137232 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 248 0 0 30 chr12 98120535 98120568 -23136962 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1 1333 268 346 78 15 chr12 98120940 98121210 -23136320 + Arthur1 DNA Tip100 3289 3575 -372 1 1333 21 0 0 0 chr12 98122597 98122618 -23134912 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 647 348 58 32 chr12 98126569 98126979 -23130551 - L2 LINE L2 -1141 2278 1858 1 1333 1543 56 5 27 chr12 98127309 98127530 -23130000 + L1Md_F2 LINE L1 6367 6582 0 1 1333 600 14 0 0 chr12 98128250 98128319 -23129211 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1333 208 286 14 14 chr12 98129336 98129407 -23128123 + CT-rich Low_complexity Low_complexity 2 72 0 1 1333 608 220 25 0 chr12 98129625 98129757 -23127773 - Lx4B LINE L1 -425 6633 6498 1 1333 228 189 100 75 chr12 98129931 98130011 -23127519 - Tigger5 DNA MER2_type -1983 423 342 1 1333 19428 166 34 33 chr12 98130528 98132660 -23124870 + L1VL4 LINE L1 387 2569 -3314 1 1333 871 44 0 17 chr12 98132660 98132776 -23124754 + B1_Mm SINE Alu 26 139 -8 1 1333 19428 166 34 33 chr12 98132776 98135474 -23122056 + L1VL4 LINE L1 2570 5334 -549 1 1333 34 55 0 0 chr12 98135478 98135533 -23121997 + AT_rich Low_complexity Low_complexity 1 55 0 1 1333 261 139 0 0 chr12 98135873 98135916 -23121614 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1 1333 21 0 0 0 chr12 98136468 98136489 -23121041 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 334 94 15 15 chr12 98136504 98136569 -23120961 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1333 441 0 0 0 chr12 98136569 98136617 -23120913 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1333 2517 60 0 0 chr12 98136749 98137065 -23120465 + L1_Mus1 LINE L1 6040 6355 -212 1 1333 285 29 0 0 chr12 98137149 98137183 -23120347 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1333 396 265 26 33 chr12 98137977 98138129 -23119401 - Lx6 LINE L1 -15 7445 7295 1 1333 246 267 146 24 chr12 98138471 98138594 -23118936 + MIRc SINE MIR 130 267 -1 1 1333 243 0 0 0 chr12 98139565 98139592 -23117938 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 1333 186 133 0 0 chr12 98140150 98140180 -23117350 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 1 1333 8767 102 38 59 chr12 98140247 98140340 -23117190 - L1VL2 LINE L1 -626 2989 2901 2 1333 2969 56 13 13 chr12 98140340 98140736 -23116794 + MTA_Mm LTR MaLR 1 396 0 2 1333 8767 102 38 59 chr12 98140736 98140809 -23116721 - L1VL2 LINE L1 -715 2900 2830 2 1333 5693 37 34 0 chr12 98140809 98141506 -23116024 - L1Md_T LINE L1 0 6582 5862 2 1333 8767 102 38 59 chr12 98141506 98142952 -23114578 - L1VL2 LINE L1 -786 2829 1409 2 1333 3506 87 2 2 chr12 98142953 98143423 -23114107 - L1Md_F2 LINE L1 -2 6580 6111 2 1333 2991 70 0 0 chr12 98143423 98143811 -23113719 + L1Md_F2 LINE L1 5703 6090 -492 2 1333 6209 94 16 65 chr12 98143807 98145282 -23112248 - L1VL2 LINE L1 -2196 1419 21 2 1333 4928 125 31 1 chr12 98145594 98146249 -23111281 + Lx LINE L1 5334 6014 -640 2 1333 234 0 0 0 chr12 98146249 98146275 -23111255 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 1333 4928 102 30 1 chr12 98146275 98146594 -23110936 + Lx LINE L1 6015 6332 -322 2 1333 452 314 74 16 chr12 98148105 98148361 -23109169 - L1_Rod LINE L1 -2622 3225 2955 2 1333 817 260 60 14 chr12 98148360 98148641 -23108889 + L1_Rod LINE L1 3239 3532 -2315 2 1333 353 306 7 22 chr12 98148646 98148783 -23108747 + L1_Rod LINE L1 4856 4990 -857 2 1333 233 184 20 139 chr12 98148954 98148993 -23108537 - ORR1C1 LTR MaLR -275 103 71 2 1333 2627 87 3 0 chr12 98148993 98149338 -23108192 - ORR1A1 LTR MaLR 0 346 1 2 1333 7602 138 10 5 chr12 98149338 98150576 -23106954 - ORR1A1-int LTR MaLR 0 1963 720 2 1333 770 135 0 107 chr12 98150537 98150686 -23106844 - MT2B LTR ERVL -314 287 155 2 1333 299 45 0 22 chr12 98150686 98150732 -23106798 + (TTTTTG)n Simple_repeat Simple_repeat 5 49 0 2 1333 984 112 0 14 chr12 98150733 98150878 -23106652 - B1_Mus2 SINE Alu -2 145 3 2 1333 4660 82 25 6 chr12 98150891 98151542 -23105988 - L1Md_F2 LINE L1 -3 6579 5917 2 1333 1024 25 0 0 chr12 98151543 98151661 -23105869 + L1Md_F2 LINE L1 5770 5887 -695 2 1333 837 176 134 94 chr12 98151661 98151862 -23105668 - ORR1A1-int LTR MaLR -1229 734 526 2 1333 911 51 8 0 chr12 98151853 98151970 -23105560 - MT2C_Mm LTR ERVL -356 119 2 2 1333 3151 176 21 12 chr12 98151970 98152535 -23104995 + Lx4A LINE L1 6486 7055 -3 2 1333 850 246 49 32 chr12 98152686 98152988 -23104542 + ORR1C1 LTR MaLR 27 378 0 2 1333 5558 192 48 28 chr12 98153119 98154344 -23103186 + Lx4B LINE L1 5813 7052 -6 2 1333 7534 36 0 0 chr12 98154344 98155244 -23102286 + L1Md_T LINE L1 5683 6582 0 2 1333 1707 128 58 14 chr12 98155283 98155575 -23101955 + Lx2 LINE L1 6688 6992 -5 2 1333 382 65 0 31 chr12 98155577 98155641 -23101889 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 2 1333 5481 135 9 0 chr12 98155672 98156555 -23100975 - L1_Mus2 LINE L1 -3087 2796 1906 2 1333 19903 126 4 2 chr12 98156552 98156942 -23100588 + L1_Mus2 LINE L1 2786 3177 -2706 2 1333 279 0 0 0 chr12 98156942 98156973 -23100557 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1333 19903 114 15 4 chr12 98156973 98160329 -23097201 + L1_Mus2 LINE L1 3178 6566 0 2 1333 225 65 0 0 chr12 98160473 98160504 -23097026 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1333 236 207 85 59 chr12 98161931 98162049 -23095481 + Zaphod2 DNA Tip100 3344 3464 -60 2 1333 249 230 65 2 chr12 98162636 98162755 -23094775 - L1MC1 LINE L1 -366 5967 5843 2 1333 1236 127 18 23 chr12 98162763 98162980 -23094550 - RLTR9F LTR ERVK 0 415 200 2 1333 479 61 195 0 chr12 98162981 98163063 -23094467 - RLTR9F LTR ERVK -317 98 1 2 1333 357 222 44 80 chr12 98163078 98163215 -23094315 - L1MC1 LINE L1 -507 5826 5695 2 1333 527 241 79 21 chr12 98165143 98165283 -23092247 - B1_Mur3 SINE Alu 0 149 2 2 1333 24 32 0 0 chr12 98165500 98165531 -23091999 + AT_rich Low_complexity Low_complexity 1 31 0 2 1333 588 176 22 0 chr12 98165993 98166129 -23091401 + (TA)n Simple_repeat Simple_repeat 1 139 0 2 1333 1289 105 5 21 chr12 98166237 98166431 -23091099 + B2_Mm1t SINE B2 1 191 -2 2 1333 929 311 74 15 chr12 98166444 98166783 -23090747 - MTD LTR MaLR -13 406 48 2 1333 416 359 86 65 chr12 98166786 98167124 -23090406 - MTE2b LTR MaLR -22 357 6 2 1333 203 96 57 19 chr12 98167179 98167232 -23090298 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1333 205 178 0 0 chr12 98167239 98167284 -23090246 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 2 1333 249 330 18 55 chr12 98167295 98167404 -23090126 - MER58B DNA MER1_type -60 281 177 2 1333 350 23 0 0 chr12 98167404 98167447 -23090083 - L1_Mus2 LINE L1 -277 6289 6247 2 1333 1095 86 12 0 chr12 98167447 98167609 -23089921 + L1_Mus2 LINE L1 6403 6566 0 2 1333 333 0 0 0 chr12 98167969 98168006 -23089524 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1333 2895 94 0 8 chr12 98168528 98168926 -23088604 - MTA_Mm LTR MaLR -1 395 1 2 1333 277 356 10 0 chr12 98169203 98169307 -23088223 - Lx8 LINE L1 -223 7250 7146 2 1333 22 80 0 0 chr12 98169540 98169590 -23087940 + AT_rich Low_complexity Low_complexity 1 50 0 2 1333 3210 44 3 0 chr12 98169665 98170049 -23087481 + IAPEY_LTR LTR ERVK 1 385 0 2 1333 842 307 11 0 chr12 98170692 98170881 -23086649 - B3 SINE B2 -25 191 1 2 1334 704 272 27 45 chr12 98173051 98173274 -23084256 - Lx9 LINE L1 -1120 6524 6306 2 1334 198 0 0 0 chr12 98173465 98173487 -23084043 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1334 288 181 14 27 chr12 98173579 98173653 -23083877 + Lx2 LINE L1 6889 6961 -36 2 1334 345 102 0 0 chr12 98173663 98173722 -23083808 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 2 1334 2361 221 21 43 chr12 98173864 98174445 -23083085 - Lx2B LINE L1 -3 6997 6430 2 1334 2491 134 138 2 chr12 98174443 98174893 -23082637 - Lx2B LINE L1 -718 6282 5772 2 1334 2449 49 6 87 chr12 98174893 98175249 -23082281 + IAPLTR2b LTR ERVK 1 327 0 2 1334 908 128 92 6 chr12 98175250 98175423 -23082107 + IAPEz-int LTR ERVK 9 196 -6285 2 1334 236 321 0 0 chr12 98175425 98175478 -23082052 + RLTR27 LTR ERVK 223 275 -34 2 1334 3571 56 3 16 chr12 98175478 98176055 -23081475 + IAPEz-int LTR ERVK 168 662 -5819 2 1334 915 43 26 0 chr12 98176055 98176171 -23081359 + IAPEz-int LTR ERVK 1359 1477 -5004 2 1334 1802 89 24 0 chr12 98176166 98176414 -23081116 + IAPEz-int LTR ERVK 2244 2497 -5183 2 1334 14013 73 7 11 chr12 98176394 98178243 -23079287 + IAPEz-int LTR ERVK 4639 6479 -2 2 1334 3073 39 62 0 chr12 98178245 98178632 -23078898 + IAPLTR2a LTR ERVK 1 411 0 2 1334 1190 204 0 8 chr12 98178632 98178869 -23078661 - L1_Mur2 LINE L1 -106 5771 5537 2 1334 338 271 81 16 chr12 98178882 98179006 -23078524 + B3 SINE B2 80 211 -5 2 1334 2889 81 13 0 chr12 98180205 98180600 -23076930 - MTB LTR MaLR 0 400 1 2 1334 495 0 0 0 chr12 98181073 98181128 -23076402 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1334 390 308 42 7 chr12 98181189 98181333 -23076197 + B1_Mur3 SINE Alu 1 149 0 2 1334 186 43 0 0 chr12 98181399 98181422 -23076108 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1334 22 35 0 0 chr12 98181627 98181656 -23075874 + AT_rich Low_complexity Low_complexity 1 29 0 2 1334 248 339 43 17 chr12 98182014 98182131 -23075399 - PB1D7 SINE Alu 0 120 1 2 1334 938 282 95 4 chr12 98183266 98183540 -23073990 - ORR1D2 LTR MaLR -13 357 59 2 1334 640 266 111 0 chr12 98183548 98183707 -23073823 + Lx7 LINE L1 5562 5741 -139 2 1334 342 0 0 0 chr12 98183707 98183745 -23073785 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1334 2379 282 155 8 chr12 98183745 98184543 -23072987 + Lx7 LINE L1 5742 6653 -1043 2 1334 366 23 0 0 chr12 98184650 98184693 -23072837 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1334 414 165 0 0 chr12 98184693 98184796 -23072734 + GA-rich Low_complexity Low_complexity 2 104 0 2 1334 599 281 60 0 chr12 98184840 98185025 -23072505 - RMER20B LTR ERVK -189 438 243 2 1334 2653 236 82 43 chr12 98185351 98186206 -23071324 + Lx7 LINE L1 6807 7694 -2 2 1334 246 200 18 18 chr12 98186227 98186283 -23071247 - ORR1D2 LTR MaLR -312 58 3 2 1334 522 245 154 45 chr12 98186283 98186464 -23071066 - MTEb LTR MaLR -39 340 138 2 1334 180 158 0 0 chr12 98186713 98186751 -23070779 + (CATA)n Simple_repeat Simple_repeat 4 41 0 2 1334 216 67 0 0 chr12 98186902 98186932 -23070598 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1334 476 157 99 22 chr12 98186933 98187024 -23070506 + RMER6C LTR ERVK 3 100 -620 2 1334 767 209 67 25 chr12 98187205 98187466 -23070064 + RMER6C LTR ERVK 339 690 0 2 1334 373 333 7 60 chr12 98187471 98187621 -23069909 - RSINE1 SINE B4 -21 144 3 2 1334 447 92 30 20 chr12 98188487 98188587 -23068943 + (TTTTG)n Simple_repeat Simple_repeat 2 102 0 2 1334 864 159 0 0 chr12 98189103 98189260 -23068270 + GA-rich Low_complexity Low_complexity 4 160 0 2 1334 237 345 8 68 chr12 98190155 98190273 -23067257 + MIR SINE MIR 46 156 -106 2 1334 387 262 9 80 chr12 98191318 98191430 -23066100 + PB1D7 SINE Alu 17 120 0 2 1334 21 0 0 0 chr12 98191610 98191631 -23065899 + AT_rich Low_complexity Low_complexity 1 21 0 2 1334 1139 82 0 0 chr12 98191637 98191784 -23065746 + B1_Mus2 SINE Alu 1 147 0 2 1334 207 61 19 58 chr12 98191795 98191847 -23065683 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 2 1334 1395 192 15 103 chr12 98194115 98194504 -23063026 - RMER10B LTR ERVL 0 398 44 2 1334 2028 91 14 0 chr12 98195159 98195444 -23062086 - Lx3_Mus LINE L1 0 7009 6721 2 1334 189 0 0 0 chr12 98195751 98195772 -23061758 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1334 198 0 0 0 chr12 98195827 98195849 -23061681 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1334 29 0 0 0 chr12 98196159 98196188 -23061342 + AT_rich Low_complexity Low_complexity 1 29 0 2 1334 252 59 0 0 chr12 98197344 98197378 -23060152 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1334 276 30 0 0 chr12 98197378 98197410 -23060120 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 1334 186 231 0 0 chr12 98197846 98197885 -23059645 + L2c LINE L2 3330 3368 -19 2 1334 1555 277 107 41 chr12 98198693 98199205 -23058325 - Lx5 LINE L1 0 7050 6505 2 1334 7172 13 2 0 chr12 98199467 98200294 -23057236 + L1Md_A LINE L1 4758 5586 -297 2 1334 8490 24 3 1 chr12 98200294 98201287 -23056243 + L1Md_A LINE L1 5587 6581 -1 2 1334 699 12 0 0 chr12 98201316 98201396 -23056134 + (GA)n Simple_repeat Simple_repeat 2 81 0 2 1334 35 54 0 0 chr12 98201748 98201804 -23055726 + AT_rich Low_complexity Low_complexity 1 56 0 2 1334 521 250 46 59 chr12 98202467 98202620 -23054910 - MER67D LTR ERV1 -308 206 56 2 1334 183 80 0 0 chr12 98202673 98202698 -23054832 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1334 230 231 0 0 chr12 98202873 98202925 -23054605 + L1_Rod LINE L1 5697 5748 -99 2 1334 348 24 0 0 chr12 98205338 98205379 -23052151 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1334 351 44 0 0 chr12 98205379 98205424 -23052106 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1334 434 366 78 0 chr12 98205582 98205724 -23051806 - B4A SINE B4 -137 155 3 2 1334 201 162 0 0 chr12 98206136 98206173 -23051357 + T-rich Low_complexity Low_complexity 3 39 0 2 1334 230 318 86 50 chr12 98206781 98206920 -23050610 + LTR16A LTR ERVL 244 387 -64 2 1334 583 318 46 75 chr12 98207055 98207443 -23050087 + MTE2a LTR MaLR 2 378 -1 2 1334 3323 178 28 12 chr12 98207671 98208318 -23049212 - Lx4A LINE L1 -488 6570 5914 2 1334 2158 117 12 26 chr12 98208307 98208718 -23048812 + Lx4A LINE L1 5514 5921 -1137 2 1334 958 237 183 0 chr12 98208767 98209046 -23048484 + Lx9 LINE L1 6596 6925 -719 2 1334 1774 312 11 31 chr12 98209064 98209340 -23048190 - Lx5 LINE L1 -7 7043 6775 3 1334 2829 105 2 5 chr12 98209340 98209741 -23047789 - MTB LTR MaLR 0 400 1 3 1334 1774 312 11 31 chr12 98209741 98210037 -23047493 - Lx5 LINE L1 -276 6774 6483 3 1334 1798 227 96 14 chr12 98210037 98210556 -23046974 + Lx9 LINE L1 6921 7482 -162 2 1334 465 127 0 0 chr12 98210561 98210640 -23046890 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 1334 39 38 0 0 chr12 98210874 98210927 -23046603 + AT_rich Low_complexity Low_complexity 1 53 0 3 1334 281 209 178 0 chr12 98210927 98211056 -23046474 + Lx9 LINE L1 7493 7644 0 2 1334 378 0 0 0 chr12 98211749 98211791 -23045739 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1334 228 344 0 47 chr12 98211932 98211996 -23045534 + B4 SINE B4 159 219 -73 3 1334 1793 132 22 13 chr12 98212101 98212415 -23045115 + Lx LINE L1 6332 6648 -6 3 1334 6696 187 42 78 chr12 98212426 98215278 -23042252 + Lx2B LINE L1 4266 6996 -4 3 1334 748 293 5 0 chr12 98215309 98215517 -23042013 - B3 SINE B2 -4 212 4 3 1334 454 334 64 91 chr12 98216340 98216658 -23040872 + B4 SINE B4 4 277 -15 3 1334 495 33 0 0 chr12 98216680 98216741 -23040789 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1334 307 294 24 40 chr12 98217837 98217961 -23039569 + MLT2B1 LTR ERVL 11 132 -388 3 1334 25 0 0 0 chr12 98218475 98218500 -23039030 + AT_rich Low_complexity Low_complexity 1 25 0 3 1334 2188 66 6 36 chr12 98219188 98219517 -23038013 - L1Md_F2 LINE L1 -3 6579 6261 3 1334 6138 63 1 0 chr12 98219515 98220278 -23037252 - L1_Mus1 LINE L1 -9 6558 5795 3 1334 21 71 0 0 chr12 98220291 98220333 -23037197 + AT_rich Low_complexity Low_complexity 1 42 0 3 1334 5830 150 30 12 chr12 98220830 98222294 -23035236 + Lx2 LINE L1 5110 6603 -394 3 1334 1197 167 80 0 chr12 98222310 98222549 -23034981 + Lx2 LINE L1 6739 6996 -1 3 1334 28 29 0 0 chr12 98222549 98222584 -23034946 + AT_rich Low_complexity Low_complexity 1 35 0 3 1334 279 0 0 0 chr12 98223732 98223763 -23033767 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1334 333 161 0 0 chr12 98223764 98223851 -23033679 + GA-rich Low_complexity Low_complexity 2 88 0 3 1334 1131 85 17 6 chr12 98223879 98224057 -23033473 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1334 817 124 35 0 chr12 98224057 98224226 -23033304 + G-rich Low_complexity Low_complexity 4 178 0 3 1334 237 315 113 35 chr12 98224298 98224528 -23033002 - L1MD2 LINE L1 -277 6082 5835 3 1334 274 293 80 55 chr12 98224874 98225073 -23032457 - L1MD2 LINE L1 -610 5632 5429 3 1334 309 253 0 0 chr12 98225099 98225182 -23032348 - L1MD2 LINE L1 -901 5458 5376 3 1334 278 301 11 0 chr12 98225298 98225391 -23032139 + L1MD LINE L1 4851 4944 -1202 3 1334 341 233 1 6 chr12 98225669 98225777 -23031753 + L1MD LINE L1 5358 5464 -980 3 1334 1345 49 0 0 chr12 98226422 98226584 -23030946 - L1Md_F2 LINE L1 -308 6274 6113 3 1334 2194 87 52 6 chr12 98226584 98226909 -23030621 + L1Md_F2 LINE L1 6241 6580 -2 3 1334 258 260 39 52 chr12 98227633 98227710 -23029820 - MLT1H LTR MaLR -393 156 81 3 1334 198 0 0 0 chr12 98228406 98228428 -23029102 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1334 270 56 0 0 chr12 98229706 98229742 -23027788 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1334 210 71 0 0 chr12 98229757 98229785 -23027745 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1334 25 24 0 23 chr12 98230261 98230283 -23027247 + AT_rich Low_complexity Low_complexity 1 22 0 3 1334 4645 184 39 13 chr12 98230283 98231190 -23026340 + Lx2B LINE L1 6071 7000 0 3 1334 25 24 0 23 chr12 98231190 98231210 -23026320 + AT_rich Low_complexity Low_complexity 1 20 0 3 1334 260 83 0 0 chr12 98231247 98231283 -23026247 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1334 918 170 4 0 chr12 98231283 98231536 -23025994 + GA-rich Low_complexity Low_complexity 1 253 0 3 1334 1309 97 16 11 chr12 98232351 98232538 -23024992 - B2_Mm2 SINE B2 -6 189 2 3 1334 207 0 0 0 chr12 98232869 98232892 -23024638 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1334 1509 278 31 9 chr12 98232948 98233406 -23024124 - Lx3C LINE L1 -3 6973 6506 3 1334 224 77 26 0 chr12 98234609 98234648 -23022882 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1334 384 22 0 0 chr12 98237662 98237707 -23019823 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1334 366 23 0 0 chr12 98237725 98237768 -23019762 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1334 3201 53 5 0 chr12 98237964 98238358 -23019172 + MTA_Mm LTR MaLR 1 396 0 3 1334 22 0 0 0 chr12 98240030 98240052 -23017478 + AT_rich Low_complexity Low_complexity 1 22 0 3 1334 5378 113 32 7 chr12 98240745 98241598 -23015932 - Lx LINE L1 0 6654 5781 3 1334 2883 80 8 3 chr12 98241602 98241991 -23015539 - L1_Mus2 LINE L1 0 6566 6176 3 1334 8498 167 84 6 chr12 98241990 98242100 -23015430 - L1_Mm LINE L1 -87 5796 5687 3 1334 252 0 0 0 chr12 98242100 98242128 -23015402 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1334 8498 167 84 6 chr12 98242128 98243662 -23013868 - L1_Mm LINE L1 -197 5686 4024 3 1334 225 0 0 0 chr12 98244275 98244300 -23013230 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 3 1334 656 270 0 0 chr12 98244303 98244440 -23013090 - B1_Mur4 SINE Alu -13 137 1 3 1334 597 333 40 30 chr12 98245941 98245997 -23011533 - B3 SINE B2 -5 211 156 3 1334 399 73 0 0 chr12 98245997 98246052 -23011478 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1334 462 49 0 0 chr12 98246052 98246113 -23011417 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1334 597 333 40 30 chr12 98246113 98246256 -23011274 - B3 SINE B2 -61 155 10 3 1334 363 23 0 0 chr12 98246257 98246301 -23011229 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1334 320 223 26 0 chr12 98246340 98246426 -23011104 - ORR1D1 LTR MaLR 0 384 291 3 1334 36235 32 4 8 chr12 98246426 98251575 -23005955 + L1Md_T LINE L1 464 5585 -298 3 1334 8380 35 0 0 chr12 98251576 98252572 -23004958 + L1Md_T LINE L1 5587 6582 0 3 1334 661 231 20 72 chr12 98252572 98252908 -23004622 - ORR1D1 LTR MaLR -61 333 38 3 1334 529 96 0 0 chr12 98253011 98253094 -23004436 - L1_Mus3 LINE L1 -7 6631 6549 3 1334 2776 143 54 0 chr12 98253098 98253601 -23003929 + Lx LINE L1 5550 6078 -576 3 1334 795 186 6 0 chr12 98253602 98253758 -23003772 + Lx2 LINE L1 5933 6089 -908 3 1334 5358 98 9 1 chr12 98253779 98254538 -23002992 - Lx3_Mus LINE L1 -1 7008 6244 3 1334 3975 91 29 60 chr12 98254539 98255344 -23002186 + Lx3_Mus LINE L1 5460 6236 -773 3 1334 251 301 84 42 chr12 98255413 98255555 -23001975 - L1MA9 LINE L1 -34 6278 6131 3 1334 424 243 33 85 chr12 98255558 98255582 -23001948 + ID_B1 SINE B4 79 223 -1 3 1334 516 210 16 39 chr12 98255582 98255711 -23001819 + B1F SINE Alu 23 148 -1 3 1334 225 0 0 0 chr12 98255716 98255741 -23001789 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1334 189 171 0 0 chr12 98255747 98255782 -23001748 + CT-rich Low_complexity Low_complexity 3 37 0 3 1334 1591 160 0 0 chr12 98255870 98256138 -23001392 + L1_Mm LINE L1 4638 4905 -978 3 1334 796 241 95 51 chr12 98256144 98256459 -23001071 - Lx7 LINE L1 0 7696 7368 3 1334 315 226 36 81 chr12 98256543 98256654 -23000876 + Lx7 LINE L1 7264 7369 -327 3 1334 222 118 0 0 chr12 98258390 98258424 -22999106 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1334 373 232 0 38 chr12 98259266 98259388 -22998142 - LTR37A LTR ERV1 0 468 323 3 1334 226 260 143 9 chr12 98259518 98259623 -22997907 - LTR37A LTR ERV1 -302 124 6 3 1334 1132 183 188 69 chr12 98259647 98259969 -22997561 - MTB LTR MaLR -10 390 29 3 1334 1791 39 8 13 chr12 98259969 98260206 -22997324 - L1Md_F3 LINE L1 0 6584 6349 3 1334 1132 183 188 69 chr12 98260206 98260229 -22997301 - MTB LTR MaLR -372 28 4 3 1334 399 272 132 8 chr12 98260327 98260483 -22997047 - Lx7 LINE L1 -451 7193 6888 3 1334 522 214 11 92 chr12 98260651 98260836 -22996694 - L1_Rod LINE L1 -1485 4362 4193 3 1334 186 43 0 0 chr12 98260979 98261002 -22996528 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1334 236 247 13 0 chr12 98261028 98261105 -22996425 + Lx9 LINE L1 7559 7636 -8 3 1334 425 19 19 0 chr12 98261366 98261420 -22996110 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1334 1026 278 53 34 chr12 98261588 98262081 -22995449 - Lx7 LINE L1 -1648 6048 5512 3 1334 397 289 36 10 chr12 98262102 98262294 -22995236 + Lx7 LINE L1 6061 6257 -1439 3 1334 920 160 0 0 chr12 98263510 98263654 -22993876 - B1_Mus1 SINE Alu 0 148 5 3 1334 483 280 65 77 chr12 98263654 98263673 -22993857 - B4A SINE B4 -59 195 66 3 1334 913 240 38 31 chr12 98264707 98265027 -22992503 - Lx7 LINE L1 -3 7693 7302 3 1334 333 0 0 0 chr12 98265027 98265064 -22992466 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1334 3451 82 19 4 chr12 98265073 98265553 -22991977 + RLTR1C LTR ERV1 1 487 -16 3 1334 188 35 35 0 chr12 98265702 98265731 -22991799 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1334 1104 292 47 15 chr12 98265763 98266104 -22991426 - MTD LTR MaLR -50 369 18 3 1334 468 331 80 29 chr12 98267166 98267528 -22990002 + L1M5 LINE L1 3223 3604 -2542 3 1334 189 74 0 0 chr12 98267651 98267678 -22989852 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 1334 250 340 101 5 chr12 98267862 98268051 -22989479 + Lx8 LINE L1 6686 6892 -581 3 1334 715 34 0 0 chr12 98268049 98268137 -22989393 - L1Md_T LINE L1 -648 5934 5847 3 1334 5411 36 0 3 chr12 98268137 98268781 -22988749 + L1Md_T LINE L1 5938 6579 -3 3 1334 654 343 35 32 chr12 98268784 98269130 -22988400 + Lx8 LINE L1 6883 7229 -244 3 1334 261 57 0 0 chr12 98269237 98269272 -22988258 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1334 1030 122 0 0 chr12 98269646 98269793 -22987737 + B1_Mus1 SINE Alu 2 148 0 3 1334 240 114 56 14 chr12 98271087 98271158 -22986372 + T-rich Low_complexity Low_complexity 2 75 0 3 1334 628 333 123 23 chr12 98271296 98271557 -22985973 - Lx8 LINE L1 -135 7338 7052 3 1334 351 0 0 0 chr12 98272068 98272107 -22985423 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1334 243 343 60 22 chr12 98272266 98272448 -22985082 + Charlie20a DNA Charlie 36 224 -583 3 1334 1888 274 41 98 chr12 98272456 98273256 -22984274 + Lx5 LINE L1 6296 7050 0 3 1334 35283 36 1 0 chr12 98275443 98281514 -22976016 + L1Md_T LINE L1 1 5589 -297 3 1334 8987 5 0 0 chr12 98281514 98282510 -22975020 + L1Md_T LINE L1 5590 6585 0 3 1334 31 44 0 0 chr12 98282524 98282569 -22974961 + AT_rich Low_complexity Low_complexity 1 45 0 3 1334 363 106 0 0 chr12 98283188 98283254 -22974276 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 3 1334 192 40 0 0 chr12 98283254 98283278 -22974252 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1334 474 18 0 0 chr12 98283301 98283356 -22974174 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1334 233 302 92 56 chr12 98283927 98284059 -22973471 - L2a LINE L2 -8 3418 3258 3 1334 561 304 40 20 chr12 98284716 98284914 -22972616 + B3 SINE B2 3 204 -12 4 1334 1136 29 305 0 chr12 98285147 98285386 -22972144 - L1Md_A LINE L1 0 6582 6271 4 1334 414 0 0 0 chr12 98285673 98285719 -22971811 + (TTTTA)n Simple_repeat Simple_repeat 3 48 0 4 1334 23 0 0 0 chr12 98286893 98286916 -22970614 + AT_rich Low_complexity Low_complexity 1 23 0 4 1334 1681 40 18 26 chr12 98286972 98287201 -22970329 + L1Md_F3 LINE L1 6358 6584 0 4 1334 195 349 73 36 chr12 98287333 98287470 -22970060 - MIRb SINE MIR -12 256 115 4 1334 258 59 0 0 chr12 98287618 98287652 -22969878 + MusHAL1 LINE L1 1453 1486 -1226 4 1334 2092 110 0 7 chr12 98287651 98287952 -22969578 - L1_Mur1 LINE L1 -195 5691 5393 4 1334 530 93 0 23 chr12 98287950 98288024 -22969506 + L1_Mur1 LINE L1 2147 2219 -3667 4 1334 1062 95 0 7 chr12 98288024 98288172 -22969358 + B1_Mus1 SINE Alu 1 147 -1 4 1334 530 93 0 23 chr12 98288172 98288185 -22969345 + L1_Mur1 LINE L1 2220 2232 -3654 4 1334 264 100 0 54 chr12 98288185 98288259 -22969271 + A-rich Low_complexity Low_complexity 6 75 0 4 1334 263 28 28 0 chr12 98288272 98288308 -22969222 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1334 6978 78 7 3 chr12 98288308 98289279 -22968251 + L1_Mur1 LINE L1 2211 3185 -2701 4 1334 218 236 206 33 chr12 98289455 98289547 -22967983 - B2_Mm2 SINE B2 -87 108 1 4 1334 21 36 0 0 chr12 98289668 98289696 -22967834 + AT_rich Low_complexity Low_complexity 1 28 0 4 1334 4051 204 22 55 chr12 98290012 98290887 -22966643 - Lx5 LINE L1 -3 7047 6202 4 1334 482 350 78 91 chr12 98290942 98291326 -22966204 + MLT1D LTR MaLR 127 505 0 4 1334 969 103 14 7 chr12 98291885 98292031 -22965499 + B1_Mus1 SINE Alu 2 148 0 4 1334 281 333 50 100 chr12 98292631 98292811 -22964719 - ORR1E LTR MaLR -125 234 64 4 1334 740 287 9 14 chr12 98292811 98293023 -22964507 + B3 SINE B2 1 211 -5 4 1334 210 188 20 40 chr12 98293440 98293490 -22964040 + MIRm SINE MIR 220 268 -8 4 1334 210 302 21 104 chr12 98294942 98294959 -22962571 - PB1D10 SINE Alu -11 106 19 4 1334 212 304 0 127 chr12 98294959 98295038 -22962492 - ID_B1 SINE B4 -56 168 100 4 1334 1071 96 0 0 chr12 98295642 98295788 -22961742 - B1_Mus1 SINE Alu -2 146 1 4 1334 182 386 0 0 chr12 98296355 98296425 -22961105 - L2 LINE L2 -703 2716 2647 4 1334 268 24 0 0 chr12 98296695 98296737 -22960793 - L1Md_T LINE L1 0 6582 6541 4 1334 360 59 0 0 chr12 98297002 98297053 -22960477 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 1334 590 309 62 50 chr12 98297377 98297714 -22959816 + L1M2 LINE L1 4512 4852 -1291 4 1334 354 393 36 10 chr12 98297725 98297918 -22959612 - B3A SINE B2 0 198 1 4 1334 350 215 12 22 chr12 98297919 98298017 -22959513 + L1M2 LINE L1 4823 4927 -1219 4 1334 512 319 22 63 chr12 98299071 98299238 -22958292 - L1Md_A LINE L1 -2 7458 7297 4 1334 414 94 0 0 chr12 98299238 98299302 -22958228 + (CAATA)n Simple_repeat Simple_repeat 2 65 0 4 1334 512 296 67 87 chr12 98299302 98299640 -22957890 - L1Md_A LINE L1 -149 7547 7202 4 1334 8783 102 18 27 chr12 98299997 98301983 -22955547 - L1Md_A LINE L1 -476 7220 5287 4 1334 1383 289 25 16 chr12 98301979 98302415 -22955115 - Lx7 LINE L1 -1167 6529 6090 4 1334 471 186 0 0 chr12 98302938 98303035 -22954495 + (TG)n Simple_repeat Simple_repeat 1 97 0 4 1334 548 324 0 63 chr12 98303774 98303965 -22953565 + B3A SINE B2 14 192 -6 4 166 749 286 8 16 chr12 98303982 98304234 -22953296 + Lx9 LINE L1 7178 7427 -217 4 1335 354 239 133 0 chr12 98304273 98304386 -22953144 + Lx9 LINE L1 7509 7636 -8 4 1335 21 36 0 0 chr12 98305203 98305231 -22952299 + AT_rich Low_complexity Low_complexity 1 28 0 4 1335 834 321 68 52 chr12 98306393 98306761 -22950769 + MTEb LTR MaLR 6 379 0 4 1335 30030 111 25 29 chr12 98307370 98308976 -22948554 + L1Md_F2 LINE L1 386 1966 -3917 4 1335 236 30 30 0 chr12 98308976 98309009 -22948521 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1335 30030 80 11 36 chr12 98309009 98312703 -22944827 + L1Md_F2 LINE L1 1967 5584 -299 4 1335 6690 93 35 13 chr12 98312704 98313679 -22943851 + L1Md_F2 LINE L1 5587 6582 0 4 1335 21 36 0 0 chr12 98313690 98313718 -22943812 + AT_rich Low_complexity Low_complexity 1 28 0 4 1335 4091 53 0 4 chr12 98314369 98314881 -22942649 + L1Md_F3 LINE L1 6061 6570 -14 4 1335 2967 35 0 0 chr12 98316649 98316995 -22940535 - ORR1A0 LTR MaLR 0 346 1 4 1335 594 0 0 0 chr12 98317008 98317074 -22940456 + (TC)n Simple_repeat Simple_repeat 2 67 0 4 1335 303 85 0 0 chr12 98317074 98317120 -22940410 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1335 192 125 0 0 chr12 98317126 98317158 -22940372 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1335 1226 71 0 6 chr12 98318123 98318294 -22939236 + (GGATG)n Simple_repeat Simple_repeat 4 173 0 4 1335 408 40 0 0 chr12 98318661 98318711 -22938819 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1335 24 53 0 0 chr12 98319359 98319397 -22938133 + AT_rich Low_complexity Low_complexity 1 38 0 4 1335 2519 275 23 67 chr12 98320438 98321279 -22936251 - Lx9 LINE L1 -468 7176 6373 4 1335 22 0 0 0 chr12 98321789 98321811 -22935719 + AT_rich Low_complexity Low_complexity 1 22 0 4 1335 201 39 0 0 chr12 98322425 98322451 -22935079 + (TAA)n Simple_repeat Simple_repeat 3 28 0 4 1335 21 36 0 0 chr12 98322724 98322752 -22934778 + AT_rich Low_complexity Low_complexity 1 28 0 4 1335 831 148 142 0 chr12 98323028 98323190 -22934340 - B2_Mm2 SINE B2 -10 185 1 4 1335 249 211 0 0 chr12 98323271 98323328 -22934202 + CT-rich Low_complexity Low_complexity 4 60 0 4 1335 599 112 0 10 chr12 98323887 98323986 -22933544 + (TTC)n Simple_repeat Simple_repeat 1 98 0 4 1335 1038 336 71 73 chr12 98324082 98324660 -22932870 + MTEa-int LTR MaLR 997 1573 -7 4 1335 588 306 9 91 chr12 98324668 98324898 -22932632 + MTEa LTR MaLR 3 213 -166 4 1335 490 293 121 69 chr12 98325031 98325379 -22932151 + RLTR9A LTR ERVK 3 368 0 4 1335 361 305 70 99 chr12 98326618 98326789 -22930741 + ID_B1 SINE B4 1 166 -58 4 1335 414 322 107 15 chr12 98326793 98327055 -22930475 + Lx8 LINE L1 7184 7469 -4 4 1335 333 298 90 8 chr12 98327276 98327398 -22930132 - MER3 DNA MER1_type -5 204 73 4 1335 1198 75 0 0 chr12 98327643 98327804 -22929726 + L1Md_T LINE L1 6422 6582 0 4 1335 201 39 0 0 chr12 98327807 98327833 -22929697 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 1335 315 320 16 98 chr12 98330379 98330635 -22926895 - MLT2B4 LTR ERVL -53 503 269 4 1335 290 284 53 45 chr12 98331314 98331447 -22926083 - MLT1A1 LTR MaLR -10 398 265 4 1335 6513 109 38 4 chr12 98331448 98333114 -22924416 + L1VL2 LINE L1 314 2040 -1575 4 1335 1865 144 75 0 chr12 98333094 98333441 -22924089 + L1VL2 LINE L1 2898 3270 -345 4 1335 5196 123 81 15 chr12 98333444 98334324 -22923206 + Lx LINE L1 5705 6642 -12 4 1335 838 40 58 26 chr12 98334324 98334479 -22923051 + (GAAAA)n Simple_repeat Simple_repeat 3 162 0 4 1335 422 301 16 8 chr12 98334937 98335061 -22922469 - B1_Mur2 SINE Alu -13 136 12 4 1335 321 89 0 0 chr12 98335462 98335507 -22922023 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 1335 337 324 43 16 chr12 98335742 98335909 -22921621 - MLT1A1 LTR MaLR -190 175 5 4 1335 246 279 93 0 chr12 98335911 98335997 -22921533 + MLT1C LTR MaLR 358 451 -16 4 1335 686 45 124 9 chr12 98336626 98336739 -22920791 - L1Md_F3 LINE L1 -2 6582 6457 4 1335 368 322 0 25 chr12 98336775 98336893 -22920637 + PB1D7 SINE Alu 1 115 -5 4 1335 184 286 0 75 chr12 98337440 98337493 -22920037 - MER5A DNA MER1_type -133 56 8 4 1335 773 353 19 6 chr12 98338411 98338730 -22918800 - L3 LINE CR1 -633 3856 3534 4 1335 202 241 0 17 chr12 98338858 98338917 -22918613 + T-rich Low_complexity Low_complexity 2 59 0 4 1335 645 14 0 0 chr12 98339915 98339989 -22917541 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1335 344 352 87 72 chr12 98340619 98340895 -22916635 + B4A SINE B4 1 280 -12 4 1335 198 0 0 0 chr12 98340928 98340950 -22916580 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1335 21 0 0 0 chr12 98341639 98341660 -22915870 + AT_rich Low_complexity Low_complexity 1 21 0 4 1335 921 322 87 22 chr12 98341727 98342083 -22915447 + MTE2a LTR MaLR 1 379 0 4 1335 646 269 63 44 chr12 98342720 98342926 -22914604 + MTD LTR MaLR 1 210 -209 4 1335 919 169 16 11 chr12 98342926 98343117 -22914413 + Lx4A LINE L1 6864 7055 -3 4 1335 563 109 0 21 chr12 98343118 98343212 -22914318 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 4 1335 718 250 70 5 chr12 98343216 98343417 -22914113 + MTD LTR MaLR 206 419 0 4 1335 1786 218 57 136 chr12 98345054 98345586 -22911944 + RMER1C Other Other 760 1220 -122 4 1335 976 101 6 22 chr12 98345586 98345768 -22911762 + (TCC)n Simple_repeat Simple_repeat 2 180 0 4 1335 1786 218 57 136 chr12 98345768 98345868 -22911662 + RMER1C Other Other 1221 1342 0 4 1335 207 235 0 0 chr12 98347121 98347172 -22910358 + (TATG)n Simple_repeat Simple_repeat 4 54 0 4 1335 230 364 90 60 chr12 98347185 98347368 -22910162 - B4 SINE B4 -19 273 78 4 1335 206 291 0 0 chr12 98347672 98347727 -22909803 + CT-rich Low_complexity Low_complexity 2 56 0 4 1335 302 152 15 0 chr12 98348183 98348233 -22909297 + T-rich Low_complexity Low_complexity 21 71 0 4 1335 1079 131 0 6 chr12 98348233 98348410 -22909120 - B2_Mm2 SINE B2 -19 176 1 4 1335 302 152 15 0 chr12 98348410 98348425 -22909105 + T-rich Low_complexity Low_complexity 6 20 0 4 1335 205 175 30 45 chr12 98349189 98349255 -22908275 + (TAAA)n Simple_repeat Simple_repeat 1 65 0 4 1335 204 209 29 15 chr12 98349582 98349650 -22907880 + (AATAG)n Simple_repeat Simple_repeat 1 69 0 4 1335 4294 223 41 72 chr12 98349913 98351623 -22905907 + Lx7 LINE L1 303 2056 -3824 4 1335 315 0 0 0 chr12 98351623 98351658 -22905872 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1335 4294 211 66 113 chr12 98351658 98352461 -22905069 + Lx7 LINE L1 2057 2726 -3154 4 1335 3193 182 67 7 chr12 98352461 98353484 -22904046 + Lx3C LINE L1 5253 6340 -636 4 1335 25 0 0 0 chr12 98353536 98353561 -22903969 + AT_rich Low_complexity Low_complexity 1 25 0 4 1335 663 13 0 0 chr12 98353615 98353691 -22903839 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1335 297 267 25 17 chr12 98353695 98353813 -22903717 + Lx7 LINE L1 4731 4849 -1031 4 1335 4009 243 40 17 chr12 98353817 98355447 -22902083 + Lx7 LINE L1 5098 6769 -927 4 1335 802 289 46 0 chr12 98355857 98356054 -22901476 + B3 SINE B2 6 211 -5 4 1335 618 194 23 8 chr12 98357077 98357207 -22900323 + URR1B DNA MER1_type 94 225 0 4 1335 22 0 0 0 chr12 98358610 98358632 -22898898 + AT_rich Low_complexity Low_complexity 1 22 0 4 1335 198 103 0 0 chr12 98360024 98360053 -22897477 + (CAGGG)n Simple_repeat Simple_repeat 2 30 0 5 1335 243 0 0 0 chr12 98361364 98361391 -22896139 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1335 25 0 0 0 chr12 98361586 98361611 -22895919 + AT_rich Low_complexity Low_complexity 1 25 0 5 1335 587 296 134 14 chr12 98361699 98361915 -22895615 - ORR1E LTR MaLR -7 352 111 5 1335 359 213 40 24 chr12 98363886 98364011 -22893519 - Lx9 LINE L1 -1 7643 7517 5 1335 726 106 0 0 chr12 98364017 98364149 -22893381 + (TG)n Simple_repeat Simple_repeat 2 133 0 5 1335 214 373 0 0 chr12 98364290 98364357 -22893173 - ID_B1 SINE B4 -66 158 92 5 1335 279 0 0 0 chr12 98364767 98364798 -22892732 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1335 909 271 126 15 chr12 98364879 98365213 -22892317 + Lx8 LINE L1 6519 6889 -584 5 1335 571 297 112 45 chr12 98365828 98366096 -22891434 - B4 SINE B4 -2 290 5 5 1335 196 122 0 58 chr12 98366487 98366539 -22890991 + T-rich Low_complexity Low_complexity 2 50 0 5 1335 198 150 0 0 chr12 98366890 98366930 -22890600 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1335 238 311 99 83 chr12 98366984 98367286 -22890244 - MLT1H2 LTR MaLR 0 489 183 5 1335 195 362 73 24 chr12 98367516 98367680 -22889850 - L2 LINE L2 -652 2767 2596 5 1335 1562 211 102 11 chr12 98368857 98369221 -22888309 + Lx2B LINE L1 6599 6995 -5 5 1335 447 162 0 0 chr12 98369636 98369716 -22887814 + (TAA)n Simple_repeat Simple_repeat 2 81 0 5 1335 1365 217 29 26 chr12 98369716 98370128 -22887402 + RMER17C LTR ERVK 16 441 -517 5 1335 28 0 0 0 chr12 98370520 98370548 -22886982 + AT_rich Low_complexity Low_complexity 1 28 0 5 1335 545 150 10 0 chr12 98370785 98370885 -22886645 + (TAG)n Simple_repeat Simple_repeat 1 101 0 5 1335 270 215 96 144 chr12 98370885 98371010 -22886520 - RLTR25B LTR ERVK -466 562 444 5 1335 531 206 27 27 chr12 98370930 98371040 -22886490 - B1_Mus2 SINE Alu -26 121 12 5 1335 252 0 0 0 chr12 98371158 98371186 -22886344 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1335 414 139 0 0 chr12 98371212 98371284 -22886246 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1335 21 0 0 0 chr12 98372336 98372357 -22885173 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 309 357 38 6 chr12 98373953 98374111 -22883419 - RMER15 LTR ERVL -17 558 396 5 1335 21 0 0 0 chr12 98375469 98375490 -22882040 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 422 200 12 37 chr12 98376877 98377038 -22880492 - Lx9 LINE L1 -11 7633 7477 5 1335 258 123 30 30 chr12 98377061 98377128 -22880402 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 5 1335 1122 216 103 0 chr12 98377138 98377420 -22880110 - Lx9 LINE L1 -133 7511 7201 5 1335 374 290 40 0 chr12 98377390 98377514 -22880016 + Lx9 LINE L1 7049 7177 -467 5 1335 11336 73 0 5 chr12 98378122 98379626 -22877904 + L1_Mm LINE L1 4031 5527 -356 5 1335 896 0 0 9 chr12 98380001 98380106 -22877424 + (GAA)n Simple_repeat Simple_repeat 2 105 0 5 1335 236 194 42 0 chr12 98380399 98380471 -22877059 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 5 1335 462 286 65 23 chr12 98382907 98383096 -22874434 + B3 SINE B2 1 186 -9 5 1335 494 135 10 0 chr12 98383385 98383489 -22874041 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 1335 230 231 0 0 chr12 98383800 98383852 -22873678 + (CAT)n Simple_repeat Simple_repeat 3 54 0 5 1335 22 80 0 0 chr12 98383953 98384003 -22873527 + AT_rich Low_complexity Low_complexity 1 50 0 5 1335 447 239 82 7 chr12 98384539 98384674 -22872856 + MER2 DNA MER2_type 71 215 -130 5 1335 301 250 73 24 chr12 98384955 98385078 -22872452 - L1MD LINE L1 -3873 2273 2145 5 1335 207 0 0 0 chr12 98385239 98385262 -22872268 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1335 2496 156 89 31 chr12 98385958 98386974 -22870556 - L1Md_F2 LINE L1 -13 6569 5459 5 1335 3413 34 5 7 chr12 98386974 98387389 -22870141 + L1Md_F2 LINE L1 6166 6579 -3 5 1335 26 0 0 0 chr12 98387422 98387448 -22870082 + AT_rich Low_complexity Low_complexity 1 26 0 5 1335 682 230 201 0 chr12 98387616 98387790 -22869740 + Lx6 LINE L1 7236 7444 -16 5 1335 573 52 0 0 chr12 98387953 98388030 -22869500 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1335 405 0 0 0 chr12 98388030 98388074 -22869456 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1335 523 320 56 93 chr12 98388966 98389287 -22868243 + MLT1B LTR MaLR 69 377 -13 5 1335 365 277 4 12 chr12 98389877 98389978 -22867552 + ID4 SINE ID 3 104 -48 5 1335 180 186 0 65 chr12 98390019 98390065 -22867465 - MIRc SINE MIR -102 166 124 5 1335 333 0 0 0 chr12 98391465 98391502 -22866028 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1335 4033 111 76 2 chr12 98392422 98393054 -22864476 - Lx2 LINE L1 0 6997 6319 5 1335 1270 292 75 35 chr12 98393142 98393713 -22863817 + Lx8 LINE L1 6835 7428 -45 5 1335 22 0 0 0 chr12 98393753 98393775 -22863755 + AT_rich Low_complexity Low_complexity 1 22 0 5 1335 316 278 175 24 chr12 98395904 98395953 -22861577 - Lx9 LINE L1 -161 7483 7435 5 1335 396 0 0 0 chr12 98395953 98395997 -22861533 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1335 316 278 175 24 chr12 98395997 98396113 -22861417 - Lx9 LINE L1 -210 7434 7294 5 1335 218 176 19 19 chr12 98396291 98396343 -22861187 + A-rich Low_complexity Low_complexity 2 53 0 5 1335 180 0 0 0 chr12 98396427 98396447 -22861083 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1335 24 0 0 0 chr12 98397057 98397081 -22860449 + AT_rich Low_complexity Low_complexity 1 24 0 5 1335 239 175 25 0 chr12 98397141 98397221 -22860309 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 5 1335 1607 152 7 7 chr12 98397526 98397810 -22859720 - Lx2 LINE L1 -6 6991 6708 5 1335 537 16 0 0 chr12 98398071 98398133 -22859397 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1335 576 42 0 0 chr12 98398284 98398355 -22859175 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1335 2201 219 45 0 chr12 98398675 98399169 -22858361 + RMER20A LTR ERVK 1 516 0 5 1335 1057 231 156 52 chr12 98400181 98400547 -22856983 - Lx4B LINE L1 -5 7053 6650 5 1335 703 265 31 0 chr12 98400753 98400949 -22856581 + L1_Mur3 LINE L1 234 435 -7293 5 1335 2178 191 18 37 chr12 98400948 98401458 -22856072 + L1_Mur3 LINE L1 3454 3953 -1927 5 1335 627 26 0 0 chr12 98401528 98401605 -22855925 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1335 4927 263 49 8 chr12 98401606 98402566 -22854964 + Lx7 LINE L1 5743 6751 -945 5 1335 2376 188 18 114 chr12 98402566 98403189 -22854341 + RLTR12A LTR ERVK 5 567 -1 5 1335 4927 263 49 8 chr12 98403189 98403678 -22853852 + Lx7 LINE L1 6752 7250 -446 5 1335 937 181 15 20 chr12 98403670 98403873 -22853657 + L1_Mur2 LINE L1 1664 1865 -4012 5 1335 6610 145 26 9 chr12 98403882 98404104 -22853426 + ORR1A2-int LTR MaLR 783 1010 -953 5 1335 1067 58 0 25 chr12 98404104 98404264 -22853266 + L1Md_F2 LINE L1 6427 6582 0 5 1335 6610 145 26 9 chr12 98404264 98405203 -22852327 + ORR1A2-int LTR MaLR 1011 1963 0 5 1335 1109 141 27 0 chr12 98405224 98405408 -22852122 + ORR1A2 LTR MaLR 81 269 -58 5 1335 6654 168 14 31 chr12 98405408 98406751 -22850779 + L1_Mur2 LINE L1 4019 5338 -539 5 1335 3020 172 49 84 chr12 98406751 98407444 -22850086 + Lx2B LINE L1 6143 6811 -189 5 1335 233 392 55 61 chr12 98407502 98407525 -22850005 - MER45C DNA Tip100 -139 814 790 5 1335 546 91 0 0 chr12 98407525 98407602 -22849928 + (TGG)n Simple_repeat Simple_repeat 1 77 0 5 1335 233 392 55 61 chr12 98407602 98407741 -22849789 - MER45C DNA Tip100 -164 789 653 5 1335 895 233 18 0 chr12 98408682 98408901 -22848629 - URR1A DNA MER1_type -1 225 3 5 1335 395 298 29 37 chr12 98409102 98409238 -22848292 - MLT1A1 LTR MaLR -273 135 1 5 1335 1117 88 0 7 chr12 98409660 98409808 -22847722 - B1_Mus1 SINE Alu 0 148 2 5 1335 221 120 40 0 chr12 98409885 98409935 -22847595 + (CATA)n Simple_repeat Simple_repeat 3 54 0 5 1335 7755 40 2 1 chr12 98410320 98411252 -22846278 - L1Md_T LINE L1 -1 6581 5649 5 1335 30 27 0 0 chr12 98411814 98411851 -22845679 + AT_rich Low_complexity Low_complexity 1 37 0 5 1335 21 36 0 0 chr12 98412040 98412068 -22845462 + AT_rich Low_complexity Low_complexity 1 28 0 5 1335 25 51 0 0 chr12 98412100 98412139 -22845391 + AT_rich Low_complexity Low_complexity 1 39 0 5 1335 8648 36 1 0 chr12 98413229 98414935 -22842595 - L1Md_F2 LINE L1 -2 6580 4874 5 1335 185 185 0 36 chr12 98415002 98415058 -22842472 + CT-rich Low_complexity Low_complexity 3 56 0 5 1335 476 342 70 27 chr12 98416040 98416226 -22841304 + B3A SINE B2 9 202 -14 5 1335 243 61 0 0 chr12 98416243 98416276 -22841254 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1335 4738 241 41 3 chr12 98416941 98418021 -22839509 - Lx7 LINE L1 -376 7320 6200 5 1335 423 0 0 0 chr12 98418025 98418072 -22839458 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1335 441 0 0 0 chr12 98418072 98418120 -22839410 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1335 230 271 92 69 chr12 98418683 98418814 -22838716 - MLT1L LTR MaLR -19 591 458 5 1335 488 115 0 0 chr12 98419924 98420011 -22837519 + L1_Mus3 LINE L1 6549 6635 -3 5 1335 304 205 100 46 chr12 98420719 98420939 -22836591 - Lx9 LINE L1 -2 7642 7325 5 1335 249 33 0 0 chr12 98421539 98421569 -22835961 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 5 1335 3172 43 3 0 chr12 98422128 98422571 -22834959 + L1Md_T LINE L1 6191 6582 0 5 1335 21 0 0 0 chr12 98422840 98422861 -22834669 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 2368 112 0 64 chr12 98424216 98424606 -22832924 - Lx LINE L1 -3 6651 6287 5 1335 222 150 0 0 chr12 98425099 98425139 -22832391 + (TCC)n Simple_repeat Simple_repeat 2 41 0 5 1335 31 0 0 0 chr12 98425204 98425235 -22832295 + AT_rich Low_complexity Low_complexity 1 31 0 5 1335 2232 148 23 8 chr12 98425235 98425623 -22831907 - Lx3B LINE L1 -5 6968 6575 5 1335 314 248 68 4 chr12 98425735 98425936 -22831594 + Lx9 LINE L1 7396 7638 -6 5 1335 23 0 0 0 chr12 98427356 98427379 -22830151 + AT_rich Low_complexity Low_complexity 1 23 0 5 1335 1230 41 0 0 chr12 98428284 98428430 -22829100 - B1_Mm SINE Alu 0 147 2 6 1335 1218 34 0 7 chr12 98428760 98428908 -22828622 + B1_Mm SINE Alu 1 147 0 6 1335 191 36 0 35 chr12 98429661 98429690 -22827840 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 6 1335 974 300 87 40 chr12 98429690 98430037 -22827493 - MTD LTR MaLR -52 367 5 6 1335 1096 289 113 115 chr12 98430050 98430865 -22826665 - MTD-int LTR MaLR -10 1570 362 6 1335 709 235 99 15 chr12 98431000 98431202 -22826328 - MTD LTR MaLR 0 419 208 6 1335 661 26 59 25 chr12 98431701 98431819 -22825711 + (CAAAAA)n Simple_repeat Simple_repeat 6 127 0 6 1335 337 326 35 74 chr12 98432201 98432403 -22825127 + MLT1A LTR MaLR 1 194 -180 6 1335 1803 169 75 11 chr12 98433638 98433986 -22823544 - ORR1B1 LTR MaLR -4 390 21 6 1335 491 31 15 0 chr12 98433997 98434062 -22823468 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 166 6382 126 18 40 chr12 98434121 98435239 -22822291 + Lx3A LINE L1 5879 6971 -10 6 1336 479 17 17 0 chr12 98435307 98435367 -22822163 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1336 1106 122 0 6 chr12 98435368 98435549 -22821981 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1336 326 360 44 79 chr12 98436057 98436286 -22821244 - MLT1A LTR MaLR 0 374 154 6 1336 396 0 0 0 chr12 98436804 98436848 -22820682 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1336 21 0 0 0 chr12 98436985 98437006 -22820524 + AT_rich Low_complexity Low_complexity 1 21 0 6 1336 281 303 33 11 chr12 98437323 98437413 -22820117 - MIR SINE MIR -161 101 10 6 1336 504 285 44 20 chr12 98439559 98439763 -22817767 + L1MB7 LINE L1 5939 6147 -37 6 1336 33 25 0 0 chr12 98439782 98439822 -22817708 + AT_rich Low_complexity Low_complexity 1 40 0 6 1336 402 74 0 0 chr12 98439823 98439877 -22817653 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1336 3469 70 43 2 chr12 98440434 98440904 -22816626 - L1Md_F2 LINE L1 -4 6578 6090 6 1336 2888 50 3 0 chr12 98440907 98441268 -22816262 + L1Md_F2 LINE L1 5634 5995 -587 6 1336 494 31 0 15 chr12 98441276 98441341 -22816189 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 6 1336 396 0 0 0 chr12 98443088 98443132 -22814398 + (TAA)n Simple_repeat Simple_repeat 3 46 0 6 1336 434 312 31 23 chr12 98443398 98443526 -22814004 + B3A SINE B2 4 132 -66 6 1336 24 32 0 0 chr12 98443864 98443895 -22813635 + AT_rich Low_complexity Low_complexity 1 31 0 6 1336 880 283 156 28 chr12 98443967 98444228 -22813302 - L1_Mur3 LINE L1 -384 5502 5212 6 1336 318 50 0 0 chr12 98444228 98444268 -22813262 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1336 383 98 16 0 chr12 98444268 98444328 -22813202 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1336 880 273 169 29 chr12 98444328 98444648 -22812882 - L1_Mur3 LINE L1 -669 5211 4821 6 1336 1902 60 4 31 chr12 98444968 98445225 -22812305 - L1_Mus2 LINE L1 0 6566 6317 6 1336 225 338 19 49 chr12 98445555 98445717 -22811813 - L1MC1 LINE L1 -108 6225 6069 6 1336 338 308 28 7 chr12 98446132 98446276 -22811254 - L1MC1 LINE L1 -337 5996 5850 6 1336 313 145 48 0 chr12 98447715 98447798 -22809732 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 6 1336 314 282 108 46 chr12 98447839 98447969 -22809561 - B2_Mm2 SINE B2 -56 139 2 6 1336 593 269 193 8 chr12 98448466 98448710 -22808820 + Lx8 LINE L1 6713 7001 -472 6 1336 250 330 92 92 chr12 98449086 98449206 -22808324 + B3A SINE B2 73 192 -6 6 1336 22 0 0 0 chr12 98449216 98449238 -22808292 + AT_rich Low_complexity Low_complexity 1 22 0 6 1336 233 288 0 88 chr12 98449835 98449915 -22807615 + BC1_Mm scRNA scRNA 28 100 -52 6 1336 371 241 6 0 chr12 98450020 98450182 -22807348 + (TG)n Simple_repeat Simple_repeat 2 164 0 6 1336 273 253 39 39 chr12 98450187 98450265 -22807265 - B4A SINE B4 0 292 215 6 1336 931 250 0 16 chr12 98450485 98450676 -22806854 - B3 SINE B2 -27 189 2 6 1336 242 274 107 27 chr12 98450702 98450777 -22806753 - B4A SINE B4 -211 81 1 6 1336 259 255 137 90 chr12 98450781 98450992 -22806538 - Charlie26a DNA MER1_type -9 316 96 6 1336 270 268 139 14 chr12 98451447 98451519 -22806011 + B3A SINE B2 2 82 -116 6 1336 489 17 0 0 chr12 98452466 98452524 -22805006 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1336 23 0 0 0 chr12 98453611 98453634 -22803896 + AT_rich Low_complexity Low_complexity 1 23 0 6 1336 3372 174 19 24 chr12 98453645 98454271 -22803259 - Lx2B LINE L1 -27 6973 6351 6 1336 468 375 20 7 chr12 98457240 98457393 -22800137 + RSINE1 SINE B4 11 165 0 6 1336 2573 205 74 7 chr12 98458056 98458597 -22798933 - Lx5 LINE L1 -18 7032 6456 6 1336 1103 276 149 26 chr12 98458799 98458880 -22798650 - L1MA7 LINE L1 -399 5892 5801 6 1336 633 249 108 10 chr12 98458880 98459075 -22798455 + B3 SINE B2 1 214 -2 6 1336 1103 283 122 28 chr12 98459075 98459872 -22797658 - L1MA7 LINE L1 -491 5800 4924 6 1336 492 152 0 39 chr12 98459992 98460122 -22797408 + (TATG)n Simple_repeat Simple_repeat 4 128 0 6 1336 249 304 0 54 chr12 98460178 98460422 -22797108 + (TATG)n Simple_repeat Simple_repeat 1 230 0 6 1336 257 337 6 44 chr12 98460452 98460635 -22796895 + (TATG)n Simple_repeat Simple_repeat 4 179 0 6 1336 288 343 17 0 chr12 98460547 98460719 -22796811 + (TATATG)n Simple_repeat Simple_repeat 1 175 0 6 1336 324 333 17 12 chr12 98460678 98460851 -22796679 + (TATG)n Simple_repeat Simple_repeat 4 177 0 6 1336 242 256 6 23 chr12 98460866 98461038 -22796492 + (TATATG)n Simple_repeat Simple_repeat 6 174 0 6 1336 310 326 5 33 chr12 98461060 98461244 -22796286 + (TATG)n Simple_repeat Simple_repeat 1 179 0 6 1336 374 292 130 8 chr12 98461256 98461578 -22795952 - L1MA7 LINE L1 -1347 4796 4438 6 1336 737 58 10 0 chr12 98463700 98463803 -22793727 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 1336 195 139 0 0 chr12 98463804 98463840 -22793690 + (CATG)n Simple_repeat Simple_repeat 3 38 0 6 1336 219 69 0 0 chr12 98463896 98463925 -22793605 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1336 275 336 14 58 chr12 98463972 98464111 -22793419 + MLT2B1 LTR ERVL 345 477 -90 6 1336 1040 57 20 47 chr12 98464126 98464274 -22793256 + B1_Mm SINE Alu 4 147 0 6 1336 270 0 0 0 chr12 98464673 98464703 -22792827 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1336 865 286 38 15 chr12 98464704 98464967 -22792563 - Lx9 LINE L1 -236 7408 7140 6 1336 237 284 88 0 chr12 98464967 98465069 -22792461 + Lx9 LINE L1 7370 7480 -164 6 1336 411 182 70 141 chr12 98465715 98465900 -22791630 + Lx2B LINE L1 6822 6993 -7 6 1336 321 93 0 0 chr12 98467022 98467076 -22790454 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 6 1336 180 0 0 0 chr12 98467082 98467102 -22790428 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 6 1336 459 52 0 0 chr12 98467289 98467347 -22790183 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1336 419 308 58 0 chr12 98468019 98468139 -22789391 + RSINE1 SINE B4 3 129 -36 6 1336 1007 300 31 47 chr12 98468482 98468863 -22788667 - MTEa LTR MaLR 0 379 5 6 1336 672 13 0 0 chr12 98468912 98468989 -22788541 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1336 22 88 0 0 chr12 98469981 98470038 -22787492 + AT_rich Low_complexity Low_complexity 1 57 0 6 1336 1626 37 0 0 chr12 98470237 98470426 -22787104 - B2_Mm1t SINE B2 -3 190 2 6 1336 638 236 200 11 chr12 98470451 98470631 -22786899 - B3 SINE B2 -2 214 1 6 1336 549 311 95 5 chr12 98470673 98470883 -22786647 + Tigger7 DNA MER2_type 169 397 -2094 6 1336 371 349 48 116 chr12 98471257 98471358 -22786172 + MTEa LTR MaLR 96 196 -183 6 1336 1184 101 0 6 chr12 98471358 98471537 -22785993 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 6 1336 380 348 18 44 chr12 98471537 98471727 -22785803 + MTEa LTR MaLR 197 367 -12 6 1336 24 32 0 0 chr12 98472153 98472184 -22785346 + AT_rich Low_complexity Low_complexity 1 31 0 6 1336 260 254 0 0 chr12 98472705 98472764 -22784766 + CT-rich Low_complexity Low_complexity 2 60 0 6 1336 25 0 0 0 chr12 98473229 98473254 -22784276 + AT_rich Low_complexity Low_complexity 1 25 0 6 1336 258 276 0 0 chr12 98474202 98474260 -22783270 + Lx9 LINE L1 5850 5907 -1737 6 1336 1119 328 40 17 chr12 98474541 98475010 -22782520 + Lx8 LINE L1 6228 6707 -766 6 1336 759 331 94 29 chr12 98475093 98475476 -22782054 + Lx8 LINE L1 6828 7235 -238 6 1336 432 284 297 32 chr12 98475710 98476066 -22781464 - L1MA5 LINE L1 -462 5838 5389 6 1336 249 266 85 0 chr12 98476076 98476170 -22781360 - L1_Rod LINE L1 -637 5210 5109 6 1336 413 224 0 25 chr12 98476170 98476330 -22781200 + CT-rich Low_complexity Low_complexity 3 158 0 6 1336 589 323 69 33 chr12 98476333 98476785 -22780745 - L1MA5 LINE L1 -984 5159 4692 6 1336 999 312 80 43 chr12 98477097 98477249 -22780281 - Lx8 LINE L1 -66 7407 7266 6 1336 1426 233 100 28 chr12 98477249 98477638 -22779892 + MTD LTR MaLR 1 417 -2 6 1336 999 312 80 43 chr12 98477638 98478048 -22779482 - Lx8 LINE L1 -208 7265 6824 6 1336 1172 321 60 19 chr12 98478079 98479004 -22778526 - L1MA5 LINE L1 -1511 4629 3668 6 1336 609 40 0 0 chr12 98480171 98480247 -22777283 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1336 530 319 68 79 chr12 98480324 98480576 -22776954 - B4A SINE B4 -3 289 41 6 1336 255 31 0 0 chr12 98482019 98482051 -22775479 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1336 24 32 0 0 chr12 98482305 98482336 -22775194 + AT_rich Low_complexity Low_complexity 1 31 0 6 1336 653 246 7 7 chr12 98482439 98482582 -22774948 - B1_Mur1 SINE Alu -6 143 1 6 1336 483 285 123 5 chr12 98482674 98482861 -22774669 - Lx8 LINE L1 -256 7217 7009 6 1336 196 301 149 11 chr12 98483097 98483191 -22774339 - MIRb SINE MIR -32 236 130 6 1336 452 333 119 69 chr12 98483324 98483601 -22773929 + B4A SINE B4 1 291 -1 6 1336 396 0 0 0 chr12 98483620 98483664 -22773866 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1336 378 0 0 0 chr12 98483664 98483705 -22773825 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1336 4281 88 3 3 chr12 98484856 98485447 -22772083 - L1_Mus3 LINE L1 -2 6636 6046 6 1336 270 73 0 0 chr12 98485622 98485663 -22771867 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1336 534 374 60 67 chr12 98485732 98486016 -22771514 - B4 SINE B4 -8 284 3 6 1336 1177 54 0 0 chr12 98486727 98486875 -22770655 - B1_Mus1 SINE Alu 0 148 1 6 1336 207 0 0 0 chr12 98488934 98488957 -22768573 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1336 2745 166 153 5 chr12 98489744 98490345 -22767185 - RMER6C LTR ERVK 0 690 1 6 1336 2264 160 60 5 chr12 98490345 98490652 -22766878 + Lx LINE L1 6213 6518 -136 6 1336 210 37 0 0 chr12 98490652 98490679 -22766851 + (TGGG)n Simple_repeat Simple_repeat 3 29 0 6 1336 2264 160 60 5 chr12 98490679 98490774 -22766756 + Lx LINE L1 6519 6636 -18 6 1336 1064 305 110 28 chr12 98491195 98491657 -22765873 + MLT2B2 LTR ERVL 8 507 -8 7 1336 5181 83 16 1 chr12 98491838 98492546 -22764984 - L1_Mus4 LINE L1 -1 6635 5918 7 1336 518 133 0 11 chr12 98494429 98494520 -22763010 + (TAA)n Simple_repeat Simple_repeat 3 92 0 7 1336 384 200 0 0 chr12 98495891 98495971 -22761559 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1336 270 288 39 86 chr12 98495979 98496211 -22761319 + L1MA4 LINE L1 5782 6002 -298 7 1336 388 233 19 19 chr12 98496208 98496313 -22761217 + Lx7 LINE L1 7590 7694 -2 7 1336 482 366 41 63 chr12 98496496 98496767 -22760763 + B4 SINE B4 22 286 -6 7 1336 327 25 0 0 chr12 98496828 98496868 -22760662 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1336 355 361 66 20 chr12 98497011 98497209 -22760321 + B4A SINE B4 57 263 -29 7 1336 1185 56 0 0 chr12 98497292 98497454 -22760076 + (GA)n Simple_repeat Simple_repeat 1 162 0 7 1336 252 89 22 22 chr12 98500063 98500109 -22757421 - MER83B-int LTR ERV1 -1061 3819 3774 1 1336 269 80 31 83 chr12 98500979 98501075 -22756455 + T-rich Low_complexity Low_complexity 3 93 0 2 1336 357 259 84 38 chr12 98501116 98501263 -22756267 + B4 SINE B4 2 143 -149 3 1336 417 115 0 0 chr12 98501373 98501451 -22756079 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 1336 203 114 0 22 chr12 98501519 98501564 -22755966 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1336 344 238 29 0 chr12 98502428 98502533 -22754997 - Lx9 LINE L1 -4 7640 7533 6 1336 450 65 0 0 chr12 98502560 98502622 -22754908 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1336 553 321 103 29 chr12 98502925 98503274 -22754256 - LTR40b LTR ERVL 0 462 88 8 1336 230 321 0 13 chr12 98503372 98503451 -22754079 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 9 1336 23 0 0 0 chr12 98503517 98503540 -22753990 + AT_rich Low_complexity Low_complexity 1 23 0 1 1336 195 42 0 0 chr12 98503921 98503945 -22753585 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1 1336 3130 57 96 12 chr12 98504153 98504582 -22752948 + L1Md_F2 LINE L1 6107 6571 -11 1 1336 467 282 76 0 chr12 98504722 98504853 -22752677 - B1_Mur1 SINE Alu -8 141 1 1 1336 903 150 0 0 chr12 98505238 98505378 -22752152 + B1_Mus1 SINE Alu 1 140 -8 1 1336 306 0 0 0 chr12 98505856 98505890 -22751640 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1336 2782 175 28 47 chr12 98505890 98506471 -22751059 + RMER4B LTR ERVK 4 573 -12 1 1336 625 343 75 116 chr12 98507075 98507636 -22749894 + MER77 LTR ERVL 62 599 -8 1 1336 240 341 108 40 chr12 98508175 98508306 -22749224 - MLT1A0 LTR MaLR -22 343 199 1 1336 1192 74 0 0 chr12 98508306 98508454 -22749076 - B1_Mus1 SINE Alu 0 148 1 1 1336 240 341 108 40 chr12 98508454 98508545 -22748985 - MLT1A0 LTR MaLR -167 198 106 1 1336 597 72 0 0 chr12 98509940 98510023 -22747507 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1336 823 231 18 31 chr12 98510183 98510411 -22747119 + URR1B DNA MER1_type 1 225 0 2 1336 293 348 126 27 chr12 98512598 98512781 -22744749 + MIRb SINE MIR 14 214 -54 2 1336 225 0 0 0 chr12 98514536 98514561 -22742969 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1336 525 215 7 49 chr12 98517026 98517168 -22740362 - Lx6 LINE L1 -9 7451 7316 2 1336 803 20 0 20 chr12 98518995 98519089 -22738441 + (TTC)n Simple_repeat Simple_repeat 1 93 0 2 1336 1291 62 11 0 chr12 98519089 98519267 -22738263 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 1336 803 20 0 20 chr12 98519267 98519274 -22738256 + (TTC)n Simple_repeat Simple_repeat 3 9 0 2 1336 438 186 80 53 chr12 98519275 98519462 -22738068 - RMER17C LTR ERVK -139 271 80 2 1336 2855 67 24 0 chr12 98519502 98519873 -22737657 + L1_Mus2 LINE L1 6187 6566 0 2 1336 198 0 0 0 chr12 98520929 98520951 -22736579 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1336 1082 95 0 20 chr12 98521748 98521886 -22735644 + B1_Mus1 SINE Alu 1 138 -10 3 1336 204 40 0 0 chr12 98521886 98521911 -22735619 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1336 1082 95 0 20 chr12 98521911 98521923 -22735607 + B1_Mus1 SINE Alu 139 148 0 3 1336 482 245 145 18 chr12 98522604 98522770 -22734760 + B4A SINE B4 106 292 0 3 1336 447 106 0 0 chr12 98522806 98522872 -22734658 + (GGGAGA)n Simple_repeat Simple_repeat 6 71 0 3 1336 34 0 0 0 chr12 98523322 98523356 -22734174 + AT_rich Low_complexity Low_complexity 1 34 0 3 1336 653 272 35 0 chr12 98523761 98523934 -22733596 - B3A SINE B2 -19 179 1 3 1336 293 299 0 10 chr12 98524733 98524831 -22732699 + GA-rich Low_complexity Low_complexity 2 98 0 3 1336 381 253 0 0 chr12 98525756 98525843 -22731687 - L1MC4a LINE L1 -159 7836 7750 3 1336 301 319 17 25 chr12 98525857 98525976 -22731554 + MLT1A1 LTR MaLR 10 127 -281 3 1336 215 231 38 13 chr12 98525976 98526055 -22731475 + (ATTG)n Simple_repeat Simple_repeat 2 82 0 4 1336 276 111 0 0 chr12 98526225 98526270 -22731260 + (ATG)n Simple_repeat Simple_repeat 2 46 0 4 1336 863 318 100 15 chr12 98526325 98526925 -22730605 - L1MC4a LINE L1 -276 7606 6956 3 1336 325 178 121 11 chr12 98527919 98528010 -22729520 + L1_Mus3 LINE L1 6496 6596 -42 4 1336 856 73 0 0 chr12 98528010 98528119 -22729411 + L1Md_F3 LINE L1 5478 5586 -297 4 1336 8196 31 4 6 chr12 98528119 98529107 -22728423 + L1Md_F3 LINE L1 5587 6572 -12 4 1336 337 285 129 14 chr12 98529370 98529509 -22728021 - MIR SINE MIR -43 219 65 4 1336 7530 62 9 3 chr12 98529531 98530724 -22726806 - L1Md_F2 LINE L1 -8 6574 5371 4 1336 23 92 0 0 chr12 98531121 98531186 -22726344 + AT_rich Low_complexity Low_complexity 1 65 0 4 1336 28 29 0 0 chr12 98531425 98531460 -22726070 + AT_rich Low_complexity Low_complexity 1 35 0 4 1336 366 23 0 0 chr12 98531702 98531745 -22725785 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1336 204 167 49 16 chr12 98531748 98531809 -22725721 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 4 1336 1216 70 6 6 chr12 98532667 98532840 -22724690 + (AGGGGG)n Simple_repeat Simple_repeat 6 178 0 5 1336 204 40 0 0 chr12 98533657 98533682 -22723848 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1336 204 67 0 0 chr12 98533826 98533856 -22723674 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 1336 2841 76 2 20 chr12 98533977 98534382 -22723148 - L1Md_F2 LINE L1 0 6582 6185 5 1336 3800 60 2 8 chr12 98534382 98534871 -22722659 + L1Md_F2 LINE L1 5707 6192 -390 5 1336 24 32 0 0 chr12 98535456 98535487 -22722043 + AT_rich Low_complexity Low_complexity 1 31 0 5 1336 22 56 0 0 chr12 98536020 98536056 -22721474 + AT_rich Low_complexity Low_complexity 1 36 0 5 1336 7085 36 8 0 chr12 98536361 98537204 -22720326 + L1Md_F2 LINE L1 5733 6582 0 5 1336 498 302 37 70 chr12 98537691 98537990 -22719540 + B4A SINE B4 3 291 -1 5 1336 500 221 16 0 chr12 98538027 98538154 -22719376 + GA-rich Low_complexity Low_complexity 2 130 0 5 1336 540 291 67 48 chr12 98538930 98539139 -22718391 - MER58A DNA MER1_type -11 213 1 5 1336 793 261 15 44 chr12 98540113 98540317 -22717213 + MTEb LTR MaLR 2 199 -180 6 1336 1085 84 14 0 chr12 98540948 98541091 -22716439 - B1_Mus2 SINE Alu -2 145 1 6 1336 270 0 0 0 chr12 98541695 98541725 -22715805 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1336 23 33 0 0 chr12 98543289 98543319 -22714211 + AT_rich Low_complexity Low_complexity 1 30 0 6 1336 238 254 66 66 chr12 98543689 98543765 -22713765 - MTE2b LTR MaLR -16 363 288 6 1336 347 385 116 28 chr12 98545101 98545464 -22712066 + L1MCa LINE L1 116 510 -5998 6 1336 243 333 50 10 chr12 98545572 98545672 -22711858 + MLT1B LTR MaLR 251 415 -52 6 1336 483 18 0 0 chr12 98546700 98546756 -22710774 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1336 916 304 23 57 chr12 98546786 98547086 -22710444 - B4 SINE B4 0 292 3 6 1336 182 330 128 87 chr12 98547385 98547604 -22709926 + MIRb SINE MIR 22 249 -19 6 1336 199 338 102 34 chr12 98547675 98547822 -22709708 + MIRc SINE MIR 101 257 -11 7 1336 390 21 0 0 chr12 98548354 98548401 -22709129 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1336 241 338 61 15 chr12 98548408 98548474 -22709056 - B3A SINE B2 -33 165 97 7 1336 378 290 56 0 chr12 98548943 98549050 -22708480 - L2 LINE L2 -1016 2403 2291 7 1336 423 0 0 0 chr12 98549561 98549608 -22707922 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1336 360 0 0 0 chr12 98549608 98549647 -22707883 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1336 1028 128 6 0 chr12 98551108 98551287 -22706243 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1336 270 297 90 0 chr12 98551303 98551401 -22706129 - MLT1A1 LTR MaLR -70 338 185 7 1336 1244 342 8 11 chr12 98551844 98552205 -22705325 - MTE2b LTR MaLR -19 360 1 7 1336 576 42 0 0 chr12 98552326 98552397 -22705133 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 7 1336 1405 90 35 30 chr12 98552529 98552759 -22704771 - Lx2A1 LINE L1 -6 7002 6772 8 1336 213 39 0 0 chr12 98553087 98553113 -22704417 + (TTA)n Simple_repeat Simple_repeat 1 26 0 8 1336 375 60 0 0 chr12 98553165 98553215 -22704315 + (TTA)n Simple_repeat Simple_repeat 1 50 0 8 1336 808 328 99 66 chr12 98553542 98554039 -22703491 + MLT2B2 LTR ERVL 3 515 0 8 1336 22 0 0 0 chr12 98554538 98554560 -22702970 + AT_rich Low_complexity Low_complexity 1 22 0 8 1336 3982 166 74 13 chr12 98555174 98555943 -22701587 - Lx2B LINE L1 0 7000 6185 8 1336 252 59 0 0 chr12 98556206 98556240 -22701290 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1336 1485 24 0 0 chr12 98556610 98556778 -22700752 + L1Md_F2 LINE L1 5419 5586 -297 8 1336 8096 42 1 2 chr12 98556779 98557763 -22699767 + L1Md_F2 LINE L1 5588 6570 -12 8 1336 226 222 12 0 chr12 98557835 98557916 -22699614 + RMER17C LTR ERVK 181 262 -148 8 1336 263 247 41 41 chr12 98559256 98559353 -22698177 - MLT1E1A LTR MaLR -2 678 582 8 1336 264 77 19 37 chr12 98559380 98559434 -22698096 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 8 1336 423 101 55 22 chr12 98559594 98559685 -22697845 - L1_Mus3 LINE L1 -6 6632 6539 9 1336 259 359 19 0 chr12 98559869 98559972 -22697558 - MIRb SINE MIR -127 141 37 9 1336 581 242 24 0 chr12 98560138 98560262 -22697268 + B3 SINE B2 9 135 -81 9 1336 426 53 0 0 chr12 98560291 98560348 -22697182 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1336 263 364 72 25 chr12 98560560 98560881 -22696649 + MT2A LTR ERVL 192 527 -6 9 1336 318 0 0 20 chr12 98560949 98560998 -22696532 - L1Md_T LINE L1 -1 6581 6534 9 1336 483 266 136 25 chr12 98561096 98561223 -22696307 + B3A SINE B2 13 156 -42 9 1336 621 90 0 0 chr12 98561223 98561312 -22696218 + (TG)n Simple_repeat Simple_repeat 1 89 0 9 1336 483 266 136 25 chr12 98561312 98561346 -22696184 + B3A SINE B2 157 192 -6 9 1336 197 119 24 0 chr12 98562020 98562062 -22695468 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 9 1336 24 53 0 0 chr12 98562247 98562285 -22695245 + AT_rich Low_complexity Low_complexity 1 38 0 9 1336 264 279 65 85 chr12 98562371 98562524 -22695006 + RSINE1 SINE B4 16 165 0 1 1336 238 195 0 25 chr12 98562530 98562609 -22694921 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1336 324 306 112 6 chr12 98563527 98563688 -22693842 + MT2A LTR ERVL 356 533 0 1 1336 813 116 20 0 chr12 98563985 98564131 -22693399 + (TC)n Simple_repeat Simple_repeat 1 149 0 1 1336 1674 173 65 88 chr12 98565531 98565917 -22691613 - ORR1B1 LTR MaLR 0 394 18 1 1337 2024 302 117 84 chr12 98566256 98567405 -22690125 + Lx9 LINE L1 5654 6797 -847 1 1337 3169 45 8 0 chr12 98567405 98567802 -22689728 + L1Md_F2 LINE L1 6182 6581 -1 1 1337 2024 302 117 84 chr12 98567802 98568432 -22689098 + Lx9 LINE L1 6798 7492 -152 1 1337 1338 175 9 0 chr12 98568640 98568863 -22688667 - URR1B DNA MER1_type 0 225 1 1 1337 479 290 104 6 chr12 98570429 98570592 -22686938 + MTEa LTR MaLR 1 179 -200 1 1337 2159 166 18 18 chr12 98570597 98570650 -22686880 + RMER6B LTR ERVK 1 53 -408 1 1337 240 35 0 0 chr12 98570650 98570679 -22686851 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1337 2159 166 18 18 chr12 98570679 98571012 -22686518 + RMER6B LTR ERVK 54 386 -75 1 1337 682 200 108 6 chr12 98570975 98571141 -22686389 - RMER6B LTR ERVK -278 183 1 1 1337 211 226 16 0 chr12 98571351 98571413 -22686117 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 1 1337 395 356 76 59 chr12 98572037 98572333 -22685197 - B4 SINE B4 -20 272 12 1 1337 28 79 0 0 chr12 98572448 98572511 -22685019 + AT_rich Low_complexity Low_complexity 1 63 0 1 1337 21 57 0 0 chr12 98572575 98572610 -22684920 + AT_rich Low_complexity Low_complexity 1 35 0 1 1337 195 139 0 0 chr12 98573076 98573112 -22684418 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1337 414 0 0 0 chr12 98573143 98573189 -22684341 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1337 369 0 0 0 chr12 98573189 98573229 -22684301 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1337 23 0 0 0 chr12 98574267 98574290 -22683240 + AT_rich Low_complexity Low_complexity 1 23 0 1 1337 550 298 88 137 chr12 98574834 98574929 -22682601 + MLT2B3 LTR ERVL 4 98 -456 1 1337 4513 49 2 7 chr12 98574929 98575500 -22682030 + L1Md_F2 LINE L1 6015 6582 0 1 1337 550 306 109 125 chr12 98575500 98575930 -22681600 + MLT2B3 LTR ERVL 98 546 -10 1 1337 441 0 0 0 chr12 98576468 98576517 -22681013 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1337 403 293 36 3 chr12 98576718 98576851 -22680679 + B1_Mur2 SINE Alu 8 142 -7 1 1337 342 0 0 0 chr12 98577400 98577438 -22680092 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1337 605 304 39 57 chr12 98577778 98578218 -22679312 + Lx9 LINE L1 7213 7644 0 1 1337 335 373 32 63 chr12 98580060 98580312 -22677218 + LTR40a LTR ERVL 118 361 -158 1 1337 1218 205 192 9 chr12 98581657 98582006 -22675524 + MTD LTR MaLR 7 419 0 1 1337 465 273 15 36 chr12 98582160 98582297 -22675233 - B1_Mur2 SINE Alu -2 147 14 1 1337 1142 69 0 0 chr12 98582299 98582444 -22675086 + B1_Mus2 SINE Alu 2 146 -1 1 1337 195 42 0 0 chr12 98582823 98582847 -22674683 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1337 464 378 54 29 chr12 98582900 98583178 -22674352 - B4A SINE B4 -6 286 2 1 1337 1206 295 115 48 chr12 98584674 98585404 -22672126 + Lx9 LINE L1 6624 7402 -242 1 1337 886 206 102 5 chr12 98585458 98585663 -22671867 + URR1B DNA MER1_type 1 225 0 1 1337 329 227 22 22 chr12 98585899 98585989 -22671541 - RMER4A LTR ERVK -373 93 4 1 1337 342 0 0 0 chr12 98586146 98586184 -22671346 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1337 531 0 0 0 chr12 98586184 98586242 -22671288 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1337 419 384 44 32 chr12 98586515 98586951 -22670579 + L2 LINE L2 2299 2739 -680 1 1337 21 36 0 0 chr12 98587031 98587059 -22670471 + AT_rich Low_complexity Low_complexity 1 28 0 1 1337 222 179 0 0 chr12 98588017 98588073 -22669457 + GA-rich Low_complexity Low_complexity 1 56 0 1 1337 343 327 68 111 chr12 98588613 98589009 -22668521 + MLT2B4 LTR ERVL 4 382 -174 1 1337 4062 114 2 5 chr12 98589856 98590436 -22667094 - Lx LINE L1 -2 6652 6075 1 1337 1144 319 44 9 chr12 98590597 98590935 -22666595 + MTEa LTR MaLR 30 379 0 1 1337 21 57 0 0 chr12 98592228 98592263 -22665267 + AT_rich Low_complexity Low_complexity 1 35 0 1 1337 484 262 9 27 chr12 98592699 98592809 -22664721 - PB1D10 SINE Alu 0 117 10 1 1337 1233 78 0 0 chr12 98592887 98593097 -22664433 + (TC)n Simple_repeat Simple_repeat 1 210 0 1 1337 229 274 19 120 chr12 98593406 98593514 -22664016 + Charlie1 DNA MER1_type 185 281 -2500 1 1337 2417 136 40 21 chr12 98593737 98594165 -22663365 - Lx2B LINE L1 -3 6997 6562 1 1337 1059 29 7 0 chr12 98594585 98594723 -22662807 + B1_Mus2 SINE Alu 9 147 0 1 1337 291 294 97 10 chr12 98594874 98594977 -22662553 + MTE2a LTR MaLR 251 362 -17 1 1337 738 307 130 22 chr12 98596623 98597083 -22660447 + MER67D LTR ERV1 1 510 -4 1 1337 1065 78 14 0 chr12 98597281 98597423 -22660107 + B1_Mus2 SINE Alu 2 145 -2 1 1337 23 33 0 0 chr12 98597642 98597672 -22659858 + AT_rich Low_complexity Low_complexity 1 30 0 1 1337 369 0 0 0 chr12 98600362 98600403 -22657127 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1337 2763 169 6 46 chr12 98601641 98602167 -22655363 - RLTR28 LTR ERVL -17 507 3 1 1337 25 51 0 0 chr12 98602311 98602350 -22655180 + AT_rich Low_complexity Low_complexity 1 39 0 1 1337 246 62 0 0 chr12 98602632 98602664 -22654866 + (TATATG)n Simple_repeat Simple_repeat 6 37 0 1 1337 398 256 58 25 chr12 98603497 98603617 -22653913 - B1F SINE Alu -15 134 11 1 1337 336 24 0 0 chr12 98603899 98603940 -22653590 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1337 6317 209 53 52 chr12 98604811 98607166 -22650364 + Lx7 LINE L1 4782 7174 -522 1 1337 633 90 0 0 chr12 98607166 98607255 -22650275 + (CCCTAG)n Simple_repeat Simple_repeat 1 89 0 1 1337 6317 235 42 60 chr12 98607255 98607388 -22650142 + Lx7 LINE L1 7175 7301 -395 1 1337 425 184 20 0 chr12 98607419 98607517 -22650013 + CT-rich Low_complexity Low_complexity 3 102 0 1 1337 262 321 9 27 chr12 98607688 98607800 -22649730 + MLT1B LTR MaLR 1 110 -280 1 1337 356 171 34 0 chr12 98607889 98607977 -22649553 + Lx4A LINE L1 6968 7058 0 1 1337 3587 107 19 2 chr12 98607996 98608513 -22649017 - Lx3A LINE L1 -2 6979 6454 1 1337 2215 119 3 3 chr12 98608513 98608842 -22648688 + Lx3A LINE L1 6095 6423 -558 1 1337 467 267 111 28 chr12 98608859 98609040 -22648490 + MLT1B LTR MaLR 195 390 0 1 1337 256 213 119 9 chr12 98609126 98609235 -22648295 - L1M2 LINE L1 -745 5546 5426 1 1337 367 267 0 0 chr12 98609242 98609317 -22648213 - 5S rRNA rRNA -1 120 46 1 1337 205 111 26 53 chr12 98609483 98609559 -22647971 + T-rich Low_complexity Low_complexity 4 77 0 1 1337 445 273 102 0 chr12 98609581 98609797 -22647733 - L1M4 LINE L1 -851 5295 5058 1 1337 251 157 20 0 chr12 98609882 98609933 -22647597 + (TATG)n Simple_repeat Simple_repeat 4 55 0 1 1337 225 178 0 0 chr12 98609936 98609981 -22647549 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 1 1337 339 323 15 0 chr12 98610061 98610191 -22647339 - L1M4 LINE L1 -1148 4998 4867 1 1337 393 22 0 0 chr12 98610200 98610246 -22647284 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1337 10900 143 5 16 chr12 98610408 98612210 -22645320 - L1_Mm LINE L1 -73 5810 4028 1 1337 6934 108 1 33 chr12 98612194 98612594 -22644936 + L1_Mus4 LINE L1 5506 5874 -762 1 1337 207 0 0 0 chr12 98612594 98612617 -22644913 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1337 6934 99 2 34 chr12 98612617 98613375 -22644155 + L1_Mus4 LINE L1 5875 6630 -6 1 1337 234 310 171 47 chr12 98613969 98614226 -22643304 + L2 LINE L2 2789 3077 -342 1 1337 298 143 26 0 chr12 98614323 98614400 -22643130 + CT-rich Low_complexity Low_complexity 2 80 0 1 1337 313 223 48 0 chr12 98615256 98615359 -22642171 - Lx9 LINE L1 -6 7638 7531 1 1337 731 145 23 0 chr12 98615373 98615504 -22642026 + Lx9 LINE L1 6962 7095 -549 1 1337 398 298 41 28 chr12 98615608 98615753 -22641777 - B1_Mur1 SINE Alu -1 148 2 1 1337 35959 43 5 3 chr12 98615889 98622260 -22635270 - L1Md_T LINE L1 -11 6574 92 1 1337 213 154 0 0 chr12 98623047 98623086 -22634444 + A-rich Low_complexity Low_complexity 1 39 0 1 1337 1211 218 35 24 chr12 98623160 98623579 -22633951 + Lx2B LINE L1 6226 6872 -125 1 1337 355 311 73 25 chr12 98624756 98624960 -22632570 - L2a LINE L2 0 3426 3213 1 1337 414 0 0 0 chr12 98625156 98625202 -22632328 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1337 7257 68 3 1 chr12 98625271 98626263 -22631267 - L1Md_F2 LINE L1 -649 5234 4241 1 1337 2524 53 6 3 chr12 98626260 98626601 -22630929 + L1Md_F2 LINE L1 5244 5585 -298 1 1337 7417 79 1 11 chr12 98626602 98627604 -22629926 + L1Md_F2 LINE L1 5587 6578 -4 1 1337 701 263 63 0 chr12 98628061 98628251 -22629279 + B3 SINE B2 2 203 -13 1 1337 1308 79 0 0 chr12 98628280 98628458 -22629072 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 1337 259 273 130 0 chr12 98628959 98629036 -22628494 - B4A SINE B4 -162 130 44 1 1337 711 164 119 6 chr12 98629036 98629196 -22628334 + L1_Mus4 LINE L1 6455 6632 -4 1 1337 2670 39 3 3 chr12 98629233 98629571 -22627959 - ORR1A1 LTR MaLR -8 338 1 1 1337 207 139 0 0 chr12 98629648 98629684 -22627846 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1337 354 134 0 0 chr12 98629819 98629886 -22627644 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1337 281 302 43 12 chr12 98629952 98630116 -22627414 + L1M5 LINE L1 3743 3911 -2235 1 1337 316 270 176 69 chr12 98630299 98630560 -22626970 - B4 SINE B4 -18 274 1 1 1337 26 74 0 0 chr12 98630905 98630959 -22626571 + AT_rich Low_complexity Low_complexity 1 54 0 1 1337 356 316 292 11 chr12 98631125 98631406 -22626124 - MTC LTR MaLR -14 407 48 1 1337 477 0 0 0 chr12 98631860 98631913 -22625617 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1337 555 16 0 0 chr12 98631913 98631976 -22625554 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1337 252 111 0 0 chr12 98632328 98632373 -22625157 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1337 225 0 0 0 chr12 98632543 98632568 -22624962 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1337 23 0 0 0 chr12 98634686 98634709 -22622821 + AT_rich Low_complexity Low_complexity 1 23 0 2 1337 749 323 42 57 chr12 98635679 98636033 -22621497 - MER77 LTR ERVL -6 601 253 2 1337 684 103 0 0 chr12 98636377 98636484 -22621046 + (TCTCCC)n Simple_repeat Simple_repeat 5 111 0 2 1337 384 22 0 0 chr12 98636485 98636530 -22621000 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1337 222 228 19 29 chr12 98637891 98637995 -22619535 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 1337 446 337 48 83 chr12 98638286 98638684 -22618846 - Lx8 LINE L1 -203 7270 6887 2 1337 195 42 0 0 chr12 98640981 98641005 -22616525 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 2 1337 225 143 41 0 chr12 98641602 98641651 -22615879 + A-rich Low_complexity Low_complexity 4 54 0 2 1337 974 120 6 17 chr12 98642252 98642430 -22615100 + (GGGGA)n Simple_repeat Simple_repeat 5 180 0 2 1337 376 80 0 155 chr12 98642430 98642637 -22614893 + GA-rich Low_complexity Low_complexity 4 178 0 2 1337 1148 98 0 6 chr12 98642669 98642843 -22614687 + (GGAAA)n Simple_repeat Simple_repeat 3 175 0 2 1337 1551 246 8 38 chr12 98643114 98643486 -22614044 - ORR1D1 LTR MaLR -9 365 5 2 1337 307 333 0 0 chr12 98644578 98644650 -22612880 + ID4 SINE ID 6 77 -6 2 1337 294 152 0 0 chr12 98644653 98644712 -22612818 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1337 2156 248 24 24 chr12 98644858 98645391 -22612139 + RLTR20C LTR ERVK 2 534 0 2 1337 250 332 0 20 chr12 98646264 98646373 -22611157 + MIR SINE MIR 50 155 -107 2 1337 561 219 55 102 chr12 98646851 98647034 -22610496 + ORR1C2 LTR MaLR 11 184 -190 2 1337 357 145 0 0 chr12 98647038 98647114 -22610416 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1337 814 251 19 14 chr12 98647114 98647324 -22610206 + ORR1C2 LTR MaLR 174 384 0 2 1337 286 348 258 9 chr12 98648325 98648595 -22608935 - MLT2C2 LTR ERVL -65 332 1 2 1337 252 314 128 0 chr12 98650416 98650518 -22607012 + MLT1B LTR MaLR 49 163 -227 2 1337 354 252 177 18 chr12 98650533 98650646 -22606884 - B1_Mur1 SINE Alu -7 142 12 2 1337 289 325 36 101 chr12 98650709 98650877 -22606653 + MLT1B LTR MaLR 234 390 0 2 1337 366 263 10 21 chr12 98651627 98651724 -22605806 + ORR1E LTR MaLR 31 126 -233 2 1337 1069 60 13 0 chr12 98652736 98652886 -22604644 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 2 1337 259 201 12 19 chr12 98652922 98653084 -22604446 + (TA)n Simple_repeat Simple_repeat 2 162 0 2 1337 3845 170 151 82 chr12 98653430 98653876 -22603654 - RLTR25B LTR ERVK -2 1026 453 2 1337 1779 73 36 4 chr12 98653876 98654125 -22603405 + L1Md_F3 LINE L1 6311 6567 -17 2 1337 234 0 0 0 chr12 98654131 98654157 -22603373 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1337 3845 170 151 82 chr12 98654157 98654663 -22602867 - RLTR25B LTR ERVK -576 452 1 2 1337 234 0 0 0 chr12 98654754 98654780 -22602750 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1337 609 14 0 0 chr12 98655292 98655362 -22602168 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1337 239 361 69 0 chr12 98655610 98655740 -22601790 - B1F SINE Alu -10 139 1 2 1337 20318 170 74 10 chr12 98656804 98662402 -22595128 - Lx3C LINE L1 -216 6760 802 2 1337 207 88 0 0 chr12 98662748 98662782 -22594748 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1337 22 35 0 0 chr12 98664853 98664882 -22592648 + AT_rich Low_complexity Low_complexity 1 29 0 2 1337 279 304 29 0 chr12 98665163 98665232 -22592298 - ID4_ SINE ID -11 72 2 2 1337 1004 279 61 56 chr12 98665267 98665837 -22591693 - Lx9 LINE L1 -17 7627 7055 2 1337 1676 189 57 43 chr12 98666132 98666503 -22591027 - ORR1C2 LTR MaLR -8 376 1 2 1337 562 319 49 24 chr12 98666767 98666931 -22590599 + B3A SINE B2 1 168 -30 2 1337 450 0 0 0 chr12 98666935 98666985 -22590545 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1337 297 283 85 99 chr12 98666993 98667287 -22590243 + Lx8 LINE L1 7176 7465 -8 2 1337 345 47 0 0 chr12 98667373 98667416 -22590114 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1337 528 261 38 90 chr12 98667426 98667716 -22589814 - Lx8 LINE L1 -9 7464 7190 2 1337 21 0 0 0 chr12 98670051 98670072 -22587458 + AT_rich Low_complexity Low_complexity 1 21 0 2 1337 577 296 5 82 chr12 98670157 98670352 -22587178 + B3A SINE B2 5 184 -32 2 1337 182 0 107 0 chr12 98670561 98670589 -22586941 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1337 707 83 9 0 chr12 98672724 98672832 -22584698 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 2 1337 252 0 0 0 chr12 98672943 98672971 -22584559 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2 1337 344 261 101 36 chr12 98672981 98673120 -22584410 + B1F SINE Alu 1 148 -1 2 1337 425 355 51 44 chr12 98673193 98673488 -22584042 + L1M4 LINE L1 85 381 -6161 2 1337 308 312 99 6 chr12 98673740 98673901 -22583629 + L1MB7 LINE L1 5744 5919 -265 2 1337 1086 67 7 0 chr12 98673972 98674107 -22583423 + B1_Mm SINE Alu 2 137 -10 2 1337 678 58 0 0 chr12 98674107 98674194 -22583336 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 2 1337 959 182 45 17 chr12 98675202 98675381 -22582149 + URR1A DNA MER1_type 2 185 -41 2 1337 294 29 0 0 chr12 98675526 98675561 -22581969 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1337 234 0 0 0 chr12 98675595 98675621 -22581909 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1337 414 0 0 0 chr12 98675621 98675666 -22581864 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1337 247 208 0 0 chr12 98675958 98676006 -22581524 + URR1A DNA MER1_type 178 225 -1 2 1337 297 0 0 0 chr12 98676069 98676102 -22581428 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 1337 349 348 8 0 chr12 98676110 98676228 -22581302 - ID_B1 SINE B4 -22 202 84 2 1337 1024 190 17 47 chr12 98676807 98677039 -22580491 + URR1B DNA MER1_type 1 225 0 2 1337 359 321 120 12 chr12 98677160 98677327 -22580203 + MIRb SINE MIR 63 247 -21 2 1337 5177 70 14 8 chr12 98677693 98678398 -22579132 + L1_Mus3 LINE L1 5920 6628 -10 2 1337 229 324 27 64 chr12 98678494 98678682 -22578848 + B3A SINE B2 2 182 -16 2 1337 225 0 0 0 chr12 98679150 98679175 -22578355 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 2 1337 528 81 0 0 chr12 98679214 98679288 -22578242 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1337 308 372 95 14 chr12 98679305 98679452 -22578078 - B4 SINE B4 -9 283 125 2 1337 816 90 0 20 chr12 98679513 98679661 -22577869 + (TA)n Simple_repeat Simple_repeat 2 146 0 2 1337 374 316 51 0 chr12 98679791 98679949 -22577581 - MER53 DNA hAT -5 188 23 2 1337 334 103 0 0 chr12 98680417 98680475 -22577055 - L1Md_F2 LINE L1 -7 6575 6518 2 1337 13886 63 8 4 chr12 98680475 98682541 -22574989 - L1Md_F2 LINE L1 -470 6112 4044 2 1337 1120 62 0 7 chr12 98684054 98684201 -22573329 + B1_Mm SINE Alu 2 147 0 2 1337 2488 282 68 38 chr12 98684447 98685468 -22572062 - RMER16-int LTR ERVK -682 4724 3674 2 1337 7586 95 11 1 chr12 98685719 98686994 -22570536 - L1_Mus3 LINE L1 -2 6636 5346 2 1337 4103 134 13 6 chr12 98687005 98687689 -22569841 + L1_Mm LINE L1 4717 5405 -478 2 1337 58 98 0 0 chr12 98687716 98687900 -22569630 + AT_rich Low_complexity Low_complexity 1 184 0 2 1337 1058 111 0 0 chr12 98687951 98688095 -22569435 - B1_Mus1 SINE Alu -2 146 3 2 1337 2846 149 82 47 chr12 98688199 98688860 -22568670 - RLTR19-int LTR ERVK -2187 3950 3267 2 1337 432 214 127 22 chr12 98688915 98689049 -22568481 - RMER16-int LTR ERVK -5069 337 190 2 1337 2638 123 37 6 chr12 98689152 98689720 -22567810 + Lx4A LINE L1 5468 6028 -1030 2 1337 1027 317 52 54 chr12 98689737 98690277 -22567253 - Lx8 LINE L1 -480 6993 6455 2 1337 460 303 53 0 chr12 98690280 98690432 -22567098 - MTE2b LTR MaLR -219 160 1 2 1337 4463 118 9 12 chr12 98692013 98692701 -22564829 + Lx3_Mus LINE L1 6324 7009 0 2 1337 250 301 100 50 chr12 98692802 98692942 -22564588 - MLT1B LTR MaLR -243 147 1 2 1337 389 269 112 67 chr12 98693005 98693184 -22564346 + B4A SINE B4 2 188 -104 2 1337 224 0 65 0 chr12 98693554 98693585 -22563945 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 2 1337 222 37 0 0 chr12 98694572 98694599 -22562931 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2 1337 333 286 131 50 chr12 98695568 98695767 -22561763 + MER31B LTR ERV1 13 227 -239 2 1337 304 276 34 69 chr12 98696850 98696992 -22560538 + B1F SINE Alu 3 142 -7 2 1338 391 315 55 8 chr12 98699503 98699631 -22557899 + ID_B1 SINE B4 82 215 -9 2 1338 430 96 191 0 chr12 98700108 98700202 -22557328 - Lx2B LINE L1 -1 6999 6888 2 1338 1212 326 105 33 chr12 98700678 98701432 -22556098 + Lx8 LINE L1 6666 7473 0 2 1338 343 321 110 54 chr12 98701432 98701840 -22555690 + L1MC5 LINE L1 7476 7906 -55 2 1338 964 250 0 0 chr12 98702031 98702235 -22555295 + B3 SINE B2 5 208 -8 2 1338 283 251 162 46 chr12 98702320 98702579 -22554951 + L1M5 LINE L1 4901 5189 -957 2 1338 590 278 28 11 chr12 98702810 98702988 -22554542 + B3 SINE B2 9 189 -27 2 1338 213 65 0 0 chr12 98702989 98703020 -22554510 + (TAA)n Simple_repeat Simple_repeat 3 33 0 2 1338 336 365 133 19 chr12 98703023 98703339 -22554191 + L1M5 LINE L1 5423 5774 -466 2 1338 492 18 0 0 chr12 98705828 98705885 -22551645 + (CATA)n Simple_repeat Simple_repeat 4 60 0 2 1338 750 336 61 42 chr12 98705897 98706158 -22551372 + B4 SINE B4 4 269 -23 2 1338 518 29 15 0 chr12 98706166 98706234 -22551296 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1338 187 320 130 0 chr12 98706284 98706384 -22551146 + MIRc SINE MIR 40 152 -116 2 1338 237 324 14 0 chr12 98708673 98708744 -22548786 - MIRm SINE MIR -18 258 187 2 1338 22 56 0 0 chr12 98708772 98708808 -22548722 + AT_rich Low_complexity Low_complexity 1 36 0 2 1338 1210 268 21 7 chr12 98709285 98709641 -22547889 + Lx5 LINE L1 6172 6751 -709 2 1338 929 168 6 0 chr12 98709646 98709825 -22547705 + GA-rich Low_complexity Low_complexity 1 180 0 3 1338 1343 311 59 7 chr12 98709912 98710352 -22547178 + Lx5 LINE L1 6568 7030 -20 3 1338 207 100 0 0 chr12 98710353 98710383 -22547147 + (TTA)n Simple_repeat Simple_repeat 3 32 0 3 1338 275 268 23 20 chr12 98712528 98712684 -22544846 - L1MA5 LINE L1 -1671 5973 5833 3 1338 464 45 30 0 chr12 98712938 98713004 -22544526 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 3 1338 378 287 34 15 chr12 98713997 98714129 -22543401 - RSINE1 SINE B4 -30 135 3 3 1338 327 344 87 9 chr12 98716104 98716436 -22541094 + L1MB7 LINE L1 5817 6174 -10 3 1338 594 93 0 0 chr12 98716683 98716769 -22540761 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 1338 580 272 31 19 chr12 98716836 98716997 -22540533 + RSINE1 SINE B4 3 165 0 3 1338 248 203 0 48 chr12 98717307 98717369 -22540161 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 3 1338 3599 109 21 0 chr12 98718105 98718639 -22538891 + L1_Mus3 LINE L1 6088 6632 -6 3 1338 24 0 0 0 chr12 98718639 98718663 -22538867 + AT_rich Low_complexity Low_complexity 1 24 0 3 1338 1883 201 56 3 chr12 98719587 98719961 -22537569 - ORR1B1 LTR MaLR 0 394 1 3 1338 453 90 0 0 chr12 98720930 98720997 -22536533 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1338 414 0 0 0 chr12 98722166 98722212 -22535318 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1338 432 0 0 0 chr12 98722221 98722269 -22535261 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1338 263 28 0 27 chr12 98722877 98722883 -22534647 + (TCCC)n Simple_repeat Simple_repeat 3 8 0 3 1338 1081 107 6 17 chr12 98722883 98723064 -22534466 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 3 1338 263 28 0 27 chr12 98723064 98723094 -22534436 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 3 1338 920 95 7 0 chr12 98723094 98723231 -22534299 + (TTTC)n Simple_repeat Simple_repeat 2 139 0 3 1338 543 288 28 14 chr12 98723234 98723375 -22534155 - B1_Mur2 SINE Alu -3 146 4 3 1338 258 306 40 8 chr12 98724653 98724778 -22532752 + GA-rich Low_complexity Low_complexity 6 134 0 3 1338 399 89 0 0 chr12 98725336 98725392 -22532138 + (CTG)n Simple_repeat Simple_repeat 1 56 0 3 1338 558 337 79 8 chr12 98725575 98725829 -22531701 + B4A SINE B4 3 274 -18 3 1338 250 292 14 0 chr12 98725852 98725924 -22531606 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1338 3215 216 41 62 chr12 98727622 98728450 -22529080 - Lx7 LINE L1 -6 7690 6880 3 1338 3492 230 66 26 chr12 98728454 98729388 -22528142 + Lx7 LINE L1 5913 6884 -812 3 1338 17568 58 5 6 chr12 98729898 98732930 -22524600 - L1Md_F2 LINE L1 -4 6578 3553 3 1338 17034 78 2 13 chr12 98732926 98735387 -22522143 + L1Md_F2 LINE L1 1133 3568 -2315 3 1338 1105 263 8 4 chr12 98735970 98736233 -22521297 - Lx5 LINE L1 -8 7042 6779 3 1338 7227 80 18 5 chr12 98736240 98737515 -22520015 - L1_Mus1 LINE L1 -1 6566 5278 3 1338 1427 252 23 13 chr12 98737521 98737913 -22519617 - Lx5 LINE L1 -237 6821 6369 3 1338 229 332 10 75 chr12 98738311 98738444 -22519086 - B1F SINE Alu 0 149 1 3 1338 584 73 12 0 chr12 98740450 98740532 -22516998 + B1_Mm SINE Alu 60 142 -5 3 1338 734 32 11 0 chr12 98740535 98740628 -22516902 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 3 1338 536 35 46 0 chr12 98741044 98741131 -22516399 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 3 1338 318 376 16 8 chr12 98741223 98741349 -22516181 - Lx8 LINE L1 -207 7266 7140 3 1338 371 342 8 0 chr12 98741364 98741484 -22516046 - Lx9 LINE L1 -470 7174 7054 3 1338 626 327 27 12 chr12 98741522 98741779 -22515751 + Lx9 LINE L1 6784 7044 -600 3 1338 992 304 35 18 chr12 98742236 98742578 -22514952 + Lx8 LINE L1 6896 7243 -230 3 1338 1521 239 39 78 chr12 98742967 98743513 -22514017 - Lx9 LINE L1 -1683 5961 5389 3 1338 1003 301 140 39 chr12 98743489 98744110 -22513420 + Lx9 LINE L1 6941 7624 -20 3 1338 824 231 59 32 chr12 98744109 98744328 -22513202 - Lx6 LINE L1 -4 7456 7232 3 1338 198 0 0 0 chr12 98744345 98744367 -22513163 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1338 7369 190 49 41 chr12 98744371 98746094 -22511436 - L1_Mur3 LINE L1 -283 5597 3861 3 1338 1281 80 28 6 chr12 98746145 98746322 -22511208 + B2_Mm2 SINE B2 1 181 -14 3 1338 474 159 19 9 chr12 98747392 98747500 -22510030 + CT-rich Low_complexity Low_complexity 2 110 0 3 1338 333 243 14 0 chr12 98748899 98748973 -22508557 - PB1D10 SINE Alu 0 117 43 3 1338 555 29 0 0 chr12 98750916 98750985 -22506545 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1338 514 323 29 18 chr12 98751059 98751229 -22506301 - B4A SINE B4 -119 173 2 3 1338 290 45 23 0 chr12 98752016 98752060 -22505470 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 3 1338 599 191 99 0 chr12 98752060 98752191 -22505339 - B1_Mus1 SINE Alu 0 148 5 3 1338 22 35 0 0 chr12 98752692 98752721 -22504809 + AT_rich Low_complexity Low_complexity 1 29 0 3 1338 205 258 32 11 chr12 98752979 98753073 -22504457 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 1338 514 178 46 9 chr12 98753076 98753184 -22504346 + Lx9 LINE L1 7354 7465 -179 3 1338 180 111 0 0 chr12 98753187 98753214 -22504316 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1338 188 0 74 0 chr12 98755019 98755046 -22502484 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1338 1705 139 0 11 chr12 98755308 98755591 -22501939 - Lx LINE L1 -2 6652 6373 3 1338 344 350 33 0 chr12 98755960 98756080 -22501450 + B1F1 SINE Alu 1 124 -25 3 1338 655 251 73 5 chr12 98759779 98759971 -22497559 + B3 SINE B2 2 206 -10 3 1338 203 0 37 0 chr12 98760083 98760110 -22497420 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1338 978 288 59 41 chr12 98760533 98761026 -22496504 + L1MC3 LINE L1 7218 7719 -66 3 1338 370 351 65 42 chr12 98762179 98762393 -22495137 + MIRc SINE MIR 45 263 -5 3 1338 23 92 0 0 chr12 98762650 98762715 -22494815 + AT_rich Low_complexity Low_complexity 1 65 0 3 1338 763 301 109 8 chr12 98762933 98763181 -22494349 - B4A SINE B4 -16 276 4 3 1338 2857 179 33 26 chr12 98763219 98763763 -22493767 + RMER12B LTR ERVK 1 548 -856 3 1338 2139 188 165 26 chr12 98763764 98764185 -22493345 + RMER12B LTR ERVK 694 1176 -228 3 1338 363 44 0 0 chr12 98764185 98764230 -22493300 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1338 2139 188 165 26 chr12 98764230 98764432 -22493098 + RMER12B LTR ERVK 1177 1404 0 3 1338 376 250 242 0 chr12 98765329 98765449 -22492081 + RMER30 DNA MER1_type 21 169 -33 3 1338 366 23 0 0 chr12 98765755 98765798 -22491732 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1338 543 31 0 0 chr12 98765878 98765943 -22491587 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1338 21 0 0 0 chr12 98766406 98766427 -22491103 + AT_rich Low_complexity Low_complexity 1 21 0 3 1338 924 196 0 0 chr12 98766448 98766621 -22490909 - Lx5 LINE L1 -1027 6023 5851 3 1338 4434 146 136 25 chr12 98766668 98767496 -22490034 + Lx3C LINE L1 6054 6973 0 3 1338 312 353 52 20 chr12 98768429 98768582 -22488948 + MIRb SINE MIR 53 210 -58 3 1338 660 174 33 46 chr12 98768928 98769079 -22488451 - B2_Mm2 SINE B2 -5 190 42 3 1338 599 188 203 0 chr12 98770079 98770212 -22487318 + URR1A DNA MER1_type 1 160 -66 3 1338 614 314 135 38 chr12 98770453 98770763 -22486767 + LTR16D LTR ERVL 181 524 -127 3 1338 846 305 98 39 chr12 98770763 98771121 -22486409 + MTE2b LTR MaLR 1 379 0 3 1338 614 314 135 38 chr12 98771121 98771231 -22486299 + LTR16D LTR ERVL 525 642 -9 3 1338 271 258 135 31 chr12 98771444 98771540 -22485990 + MLT1A0 LTR MaLR 243 348 -17 3 1338 660 162 60 20 chr12 98772021 98772162 -22485368 + RMER17C LTR ERVK 2 149 -261 3 1338 450 0 0 0 chr12 98772162 98772212 -22485318 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1338 660 206 45 1460 chr12 98772212 98772388 -22485142 + RMER17C LTR ERVK 150 409 -1 3 1338 7636 91 77 8 chr12 98772753 98773776 -22483754 - Lx3_Mus LINE L1 0 7009 5907 3 1338 203 61 0 29 chr12 98773776 98773810 -22483720 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 3 1338 7636 91 77 8 chr12 98773810 98773934 -22483596 - Lx3_Mus LINE L1 -1103 5906 5783 3 1338 4733 121 40 14 chr12 98773943 98775230 -22482300 - L1_Mus1 LINE L1 0 6567 5240 3 1338 7704 124 51 26 chr12 98775224 98777143 -22480387 - L1_Mur1 LINE L1 -3458 2428 4 3 1338 408 71 0 0 chr12 98777515 98777571 -22479959 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1338 363 239 88 33 chr12 98777919 98778101 -22479429 - MER53 DNA hAT -1 192 1 3 1338 22 94 0 0 chr12 98778430 98778494 -22479036 + AT_rich Low_complexity Low_complexity 1 64 0 3 1338 207 0 0 0 chr12 98778587 98778610 -22478920 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1338 805 306 88 37 chr12 98778639 98779046 -22478484 - Lx7 LINE L1 -334 7362 6935 3 1338 1056 289 69 52 chr12 98779061 98779488 -22478042 - Lx7 LINE L1 -980 6716 6284 3 1338 333 0 0 0 chr12 98779488 98779525 -22478005 + (CATA)n Simple_repeat Simple_repeat 2 38 0 3 1338 1056 289 69 52 chr12 98779525 98779616 -22477914 - Lx7 LINE L1 -1413 6283 6189 3 1338 270 0 0 0 chr12 98779616 98779646 -22477884 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1338 394 255 0 0 chr12 98779662 98779760 -22477770 - Lx7 LINE L1 -232 5648 5551 3 1338 483 264 137 0 chr12 98779759 98779956 -22477574 - Lx7 LINE L1 -715 5165 4942 3 1338 808 214 13 51 chr12 98779950 98780186 -22477344 + Lx7 LINE L1 4704 4930 -950 3 1338 234 62 0 0 chr12 98780268 98780300 -22477230 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1338 693 254 8 127 chr12 98780467 98780711 -22476819 - MTE2b LTR MaLR 0 379 165 3 1338 451 318 0 0 chr12 98780795 98780905 -22476625 - MTE2b LTR MaLR -269 110 1 3 1338 258 154 80 0 chr12 98781653 98781719 -22475811 + MIRc SINE MIR 54 123 -85 3 1338 783 323 54 93 chr12 98782059 98782544 -22474986 + MLT1C LTR MaLR 2 467 0 3 1338 207 167 0 0 chr12 98782714 98782756 -22474774 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1338 195 204 0 0 chr12 98782834 98782878 -22474652 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 1338 473 351 24 12 chr12 98783130 98783297 -22474233 - MTD LTR MaLR -232 187 19 3 1338 595 304 66 41 chr12 98783787 98784058 -22473472 + B4 SINE B4 2 279 -13 3 1338 351 362 78 62 chr12 98784377 98784621 -22472909 + B4A SINE B4 29 276 -16 3 1338 213 196 0 0 chr12 98784635 98784681 -22472849 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 3 1338 347 147 0 29 chr12 98784708 98784778 -22472752 + GA-rich Low_complexity Low_complexity 2 69 0 3 1338 204 188 19 94 chr12 98785130 98785183 -22472347 + L4 LINE RTE 1966 2014 -15 4 1338 1135 294 41 50 chr12 98786087 98786602 -22470928 + Lx8 LINE L1 6949 7458 -15 4 1338 622 229 138 23 chr12 98786800 98786974 -22470556 + B3A SINE B2 1 194 -4 4 1338 944 302 43 56 chr12 98788332 98788707 -22468823 + MTE2b LTR MaLR 10 379 0 4 1338 532 302 62 40 chr12 98788741 98789017 -22468513 + B4 SINE B4 5 286 -6 4 1338 409 351 30 44 chr12 98789183 98789478 -22468052 + B4A SINE B4 2 292 0 4 1338 800 200 0 6 chr12 98789613 98789794 -22467736 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1338 246 327 26 26 chr12 98790245 98790358 -22467172 + MER5B DNA MER1_type 66 178 0 4 1338 2416 296 59 21 chr12 98790669 98791774 -22465756 - Lx9 LINE L1 -130 7514 6368 4 1338 567 258 40 27 chr12 98791885 98792124 -22465406 - Lx9 LINE L1 -1673 5971 5694 4 1338 227 349 83 28 chr12 98795015 98795124 -22462406 + MLT1B LTR MaLR 276 390 0 4 1338 287 330 73 64 chr12 98795217 98795327 -22462203 + MLT-int LTR MaLR 63 173 -1562 4 1338 16758 97 126 1 chr12 98795342 98799518 -22458012 - L1Md_T LINE L1 0 6582 1170 4 1338 4387 144 28 35 chr12 98799524 98800438 -22457092 - L1Md_T LINE L1 -5411 1205 298 4 1338 21 36 0 0 chr12 98801381 98801409 -22456121 + AT_rich Low_complexity Low_complexity 1 28 0 4 1338 2770 107 38 30 chr12 98803306 98803777 -22453753 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1338 660 219 0 12 chr12 98804059 98804246 -22453284 + L1Md_T LINE L1 6422 6582 0 4 1338 519 107 0 0 chr12 98804309 98804393 -22453137 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 4 1338 2720 196 69 3 chr12 98804393 98804973 -22452557 - Lx LINE L1 0 6654 6037 4 1338 31109 70 2 2 chr12 98805005 98810017 -22447513 + L1Md_F2 LINE L1 575 5585 -298 4 1338 8147 43 3 0 chr12 98810018 98810999 -22446531 + L1Md_F2 LINE L1 5587 6570 -12 4 1338 6333 114 6 9 chr12 98810999 98812653 -22444877 - L1VL4 LINE L1 -1891 1668 20 4 1338 243 139 23 0 chr12 98812654 98812697 -22444833 - L1VL4 LINE L1 -6258 44 1 4 1338 1757 226 82 51 chr12 98813250 98813801 -22443729 + RMER1C Other Other 772 1339 -3 4 1338 558 322 174 67 chr12 98816701 98817163 -22440367 - MLT1F2 LTR MaLR -7 541 30 4 1338 467 334 112 68 chr12 98817163 98817458 -22440072 + B4 SINE B4 1 278 -14 4 1338 220 91 0 43 chr12 98817462 98817508 -22440022 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1338 401 36 18 0 chr12 98817864 98817919 -22439611 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 4 1338 493 319 14 0 chr12 98817954 98818095 -22439435 - ID_B1 SINE B4 0 224 82 4 1338 497 226 116 0 chr12 98819865 98820064 -22437466 + Lx9 LINE L1 7401 7622 -22 4 1338 390 42 0 0 chr12 98820075 98820123 -22437407 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1338 669 319 42 0 chr12 98821680 98821846 -22435684 + B4 SINE B4 2 174 -118 4 1338 564 56 0 0 chr12 98823025 98823097 -22434433 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1338 860 220 46 74 chr12 98823652 98823868 -22433662 + MTC LTR MaLR 1 210 -211 4 1338 3802 89 104 10 chr12 98823868 98824532 -22432998 - L1_Mus3 LINE L1 -623 6015 5288 4 1338 5259 94 3 0 chr12 98824536 98825251 -22432279 - L1_Mus1 LINE L1 -1 6566 5850 4 1338 4408 93 79 43 chr12 98825251 98826335 -22431195 + L1_Mus2 LINE L1 5429 6566 0 4 1338 1464 156 4 0 chr12 98826346 98826571 -22430959 + MTC LTR MaLR 196 421 0 4 1338 264 59 0 0 chr12 98826604 98826638 -22430892 + (CATA)n Simple_repeat Simple_repeat 4 37 0 4 1338 224 274 32 0 chr12 98826784 98826879 -22430651 + (TTTA)n Simple_repeat Simple_repeat 3 100 0 4 1338 566 362 80 52 chr12 98826997 98827283 -22430247 - MLT1F LTR MaLR -57 491 198 4 1338 357 315 122 25 chr12 98827289 98827527 -22430003 - L1M5 LINE L1 -1491 4655 4395 4 1338 543 193 60 17 chr12 98827585 98827701 -22429829 - MTC LTR MaLR 0 421 301 4 167 5766 16 0 0 chr12 98827701 98828392 -22429138 + L1Md_T LINE L1 4896 5586 -297 4 1339 8578 28 0 0 chr12 98828392 98829386 -22428144 + L1Md_T LINE L1 5587 6580 -2 4 1339 293 254 0 0 chr12 98829477 98829544 -22427986 - MTC LTR MaLR -108 311 245 4 1339 924 199 16 0 chr12 98829547 98829733 -22427797 - Lx9 LINE L1 -750 6894 6706 4 1339 1181 221 65 0 chr12 98829732 98830053 -22427477 + Lx9 LINE L1 7300 7641 -3 4 1339 492 291 18 50 chr12 98830233 98830454 -22427076 + Lx7 LINE L1 5642 5855 -1841 4 1339 788 329 38 28 chr12 98830709 98831109 -22426421 - Lx8 LINE L1 -251 7222 6819 4 1339 25 31 0 0 chr12 98831202 98831234 -22426296 + AT_rich Low_complexity Low_complexity 1 32 0 4 1339 456 347 55 15 chr12 98832046 98832318 -22425212 - Lx8 LINE L1 -243 7230 6948 4 1339 535 319 60 97 chr12 98833147 98833498 -22424032 + ORR1E LTR MaLR 4 341 -18 4 1339 1211 43 0 0 chr12 98833549 98833690 -22423840 + B1_Mus1 SINE Alu 3 143 -5 4 1339 1116 0 0 0 chr12 98833701 98833825 -22423705 + (GGAAA)n Simple_repeat Simple_repeat 2 125 0 4 1339 1325 251 128 16 chr12 98835150 98835526 -22422004 - MTD LTR MaLR -1 418 1 4 1339 360 0 0 0 chr12 98835556 98835596 -22421934 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1339 307 316 56 51 chr12 98835761 98835923 -22421607 + MLT1D LTR MaLR 1 170 -335 4 1339 682 287 57 34 chr12 98836525 98836821 -22420709 - MER90 LTR ERV1 -272 303 1 4 1339 190 276 52 0 chr12 98837061 98837119 -22420411 - L2c LINE L2 -278 3109 3049 4 1339 21 0 0 0 chr12 98837749 98837770 -22419760 + AT_rich Low_complexity Low_complexity 1 21 0 4 1339 4621 141 2 11 chr12 98837870 98838659 -22418871 + Lx2A LINE L1 6032 6813 -195 4 1339 1835 154 93 25 chr12 98838659 98839013 -22418517 - RLTR9A2 LTR ERVK 0 383 6 4 1339 292 140 88 0 chr12 98839049 98839106 -22418424 - ETnERV2-int LTR ERVK -14 7392 7331 4 1339 397 287 156 0 chr12 98839316 98839483 -22418047 - ETnERV2-int LTR ERVK -981 6425 6233 4 1339 385 257 0 52 chr12 98839565 98839680 -22417850 - ETnERV2-int LTR ERVK -1201 6205 6097 4 1339 14228 155 49 51 chr12 98839694 98841371 -22416159 - ETnERV2-int LTR ERVK -1236 4170 2491 4 1339 2906 104 26 49 chr12 98841371 98841864 -22415666 - RLTR45 LTR ERVK 0 482 1 4 1339 14228 148 30 61 chr12 98841864 98844391 -22413139 - ETnERV2-int LTR ERVK -3858 3548 1086 4 1339 414 0 0 0 chr12 98844391 98844437 -22413093 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1339 423 0 0 0 chr12 98844475 98844522 -22413008 + (TTTTA)n Simple_repeat Simple_repeat 4 50 0 4 1339 1867 120 118 23 chr12 98844830 98845179 -22412351 - RLTR9A2 LTR ERVK 0 383 2 4 1339 599 138 65 59 chr12 98845179 98845348 -22412182 + Lx2A LINE L1 6807 6976 -32 4 1339 505 94 0 12 chr12 98845341 98845427 -22412103 + Lx2A LINE L1 6923 7007 -1 4 1339 195 42 0 0 chr12 98845705 98845729 -22411801 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1339 577 296 56 12 chr12 98847102 98847263 -22410267 + B3 SINE B2 3 170 -46 4 1339 693 0 0 0 chr12 98848523 98848600 -22408930 + (GAA)n Simple_repeat Simple_repeat 1 77 0 4 1339 180 111 0 0 chr12 98850580 98850607 -22406923 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 4 1339 252 0 0 0 chr12 98851009 98851037 -22406493 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1339 314 73 0 0 chr12 98851569 98851610 -22405920 - tRNA-Gly-GGA tRNA tRNA -34 41 1 4 1339 1692 225 21 5 chr12 98852701 98853085 -22404445 + Lx6 LINE L1 7064 7453 -7 4 1339 306 0 0 0 chr12 98853130 98853164 -22404366 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 1339 1691 282 100 16 chr12 98853276 98854042 -22403488 + Lx6 LINE L1 5896 6760 -936 4 1339 1819 70 0 0 chr12 98854044 98854285 -22403245 - L1_Mus1 LINE L1 -142 6425 6185 4 1339 1157 99 0 0 chr12 98854285 98854446 -22403084 + L1_Mus1 LINE L1 6407 6567 0 4 1339 35183 30 1 7 chr12 98854467 98859649 -22397881 + L1Md_T LINE L1 445 5586 -297 4 1339 8291 42 0 0 chr12 98859649 98860642 -22396888 + L1Md_T LINE L1 5587 6579 -3 4 1339 1934 258 88 57 chr12 98860649 98861024 -22396506 + Lx6 LINE L1 6756 7136 -324 4 1339 516 16 0 0 chr12 98861024 98861085 -22396445 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1339 1934 258 88 57 chr12 98861085 98861378 -22396152 + Lx6 LINE L1 7137 7444 -16 4 1339 233 141 266 0 chr12 98861429 98861493 -22396037 + LTR37A LTR ERV1 316 396 -30 4 1339 243 346 9 70 chr12 98861750 98861865 -22395665 + PB1D10 SINE Alu 9 116 -1 4 1339 7435 163 13 34 chr12 98862196 98863712 -22393818 - Lx2B LINE L1 0 7000 5516 4 1339 369 0 0 0 chr12 98863843 98863884 -22393646 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1339 347 219 61 0 chr12 98865045 98865127 -22392403 - B1_Mur1 SINE Alu 0 149 63 4 1339 255 61 0 0 chr12 98865273 98865306 -22392224 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 1339 486 305 0 0 chr12 98865310 98865428 -22392102 - B1F SINE Alu -22 127 10 4 1339 480 262 38 25 chr12 98865852 98866023 -22391507 + B3A SINE B2 5 176 -19 4 1339 428 295 54 0 chr12 98866059 98866171 -22391359 - B1F1 SINE Alu 0 149 32 4 1339 306 311 41 58 chr12 98866667 98866838 -22390692 + MLT1C LTR MaLR 8 175 -292 4 1339 646 55 35 26 chr12 98866865 98866978 -22390552 + L1Md_F2 LINE L1 6465 6578 -4 4 1339 207 0 0 0 chr12 98866998 98867021 -22390509 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1339 25 31 0 0 chr12 98867191 98867223 -22390307 + AT_rich Low_complexity Low_complexity 1 32 0 4 1339 283 195 16 25 chr12 98867349 98867470 -22390060 + CT-rich Low_complexity Low_complexity 1 120 0 4 1339 1422 264 54 22 chr12 98867617 98868023 -22389507 - MTD LTR MaLR 0 419 1 4 1339 198 0 0 0 chr12 98868149 98868171 -22389359 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1339 754 314 114 22 chr12 98868782 98869140 -22388390 - MTD LTR MaLR -23 396 6 4 1339 1175 55 7 0 chr12 98869330 98869475 -22388055 + B1_Mus2 SINE Alu 1 146 -1 4 1339 181 72 45 45 chr12 98869475 98869519 -22388011 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 1339 579 271 138 5 chr12 98869597 98869786 -22387744 - B3 SINE B2 -1 215 2 4 1339 430 333 32 60 chr12 98869814 98870095 -22387435 + B4A SINE B4 2 274 -18 4 1339 348 24 0 0 chr12 98870125 98870166 -22387364 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1339 290 195 13 0 chr12 98871885 98871962 -22385568 + GA-rich Low_complexity Low_complexity 4 81 0 4 1339 249 200 121 15 chr12 98871981 98872047 -22385483 + MER31A LTR ERV1 2 74 -411 4 1339 1437 38 0 5 chr12 98872082 98872267 -22385263 + L1Md_F3 LINE L1 6399 6582 -2 4 1339 969 175 27 25 chr12 98872324 98872607 -22384923 + RMER4B LTR ERVK 261 576 -9 4 1339 954 319 89 6 chr12 98872785 98873122 -22384408 - MTD LTR MaLR -37 382 18 5 1339 253 301 14 0 chr12 98873161 98873234 -22384296 - B4A SINE B4 -208 84 11 5 1339 278 296 97 48 chr12 98873456 98873683 -22383847 + Arthur1 DNA Tip100 3707 3944 -3 5 1339 512 314 23 103 chr12 98873690 98874041 -22383489 + Charlie2a DNA MER1_type 661 983 -1878 5 1339 22 56 0 0 chr12 98874436 98874472 -22383058 + AT_rich Low_complexity Low_complexity 1 36 0 5 1339 797 353 81 20 chr12 98874625 98874969 -22382561 + MLT2B3 LTR ERVL 119 483 -71 5 1339 198 0 0 0 chr12 98875584 98875606 -22381924 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1339 963 211 116 7 chr12 98876440 98876750 -22380780 + Lx9 LINE L1 7294 7637 -7 5 1339 29 28 0 0 chr12 98876823 98876859 -22380671 + AT_rich Low_complexity Low_complexity 1 36 0 5 1339 29 0 0 0 chr12 98876994 98877023 -22380507 + AT_rich Low_complexity Low_complexity 1 29 0 5 1339 618 255 36 41 chr12 98877033 98877229 -22380301 + B3A SINE B2 3 197 -1 5 1339 257 347 0 0 chr12 98877284 98877359 -22380171 - ID4 SINE ID -4 79 5 5 1339 574 119 56 0 chr12 98877410 98877536 -22379994 + Lx2A LINE L1 6844 6976 -32 5 1339 407 83 0 67 chr12 98877527 98877617 -22379913 + Lx2A LINE L1 6921 7004 -4 5 1339 234 0 0 0 chr12 98877787 98877813 -22379717 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1339 1359 329 56 8 chr12 98878017 98878496 -22379034 + MLT1E2 LTR MaLR 1 502 -125 5 1339 253 241 0 0 chr12 98879044 98879102 -22378428 + (TAA)n Simple_repeat Simple_repeat 3 60 0 5 1339 645 296 30 72 chr12 98879119 98879381 -22378149 - RMER15 LTR ERVL -53 522 272 5 1339 24 0 0 0 chr12 98879388 98879412 -22378118 + AT_rich Low_complexity Low_complexity 1 24 0 5 1339 180 288 86 12 chr12 98879554 98879635 -22377895 + L2 LINE L2 2891 2977 -442 5 1339 350 319 8 25 chr12 98880107 98880245 -22377285 - MLT1A1 LTR MaLR 0 408 246 5 1339 330 316 68 68 chr12 98880262 98880469 -22377061 - MLT1A1 LTR MaLR -201 207 1 5 1339 502 178 42 0 chr12 98880592 98880710 -22376820 - Lx9 LINE L1 0 7644 7522 5 1339 225 0 0 0 chr12 98880710 98880735 -22376795 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 1339 1780 209 23 8 chr12 98880739 98881134 -22376396 + Lx9 LINE L1 7075 7475 -169 5 1339 1360 233 184 23 chr12 98881138 98881494 -22376036 + RLTR16 LTR ERVK 1 401 -104 5 1339 318 26 0 0 chr12 98881494 98881533 -22375997 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1339 1360 233 184 23 chr12 98881533 98881611 -22375919 + RLTR16 LTR ERVK 402 504 -1 5 1339 2034 205 14 21 chr12 98882104 98882528 -22375002 + MTC LTR MaLR 1 421 0 5 1339 337 200 0 0 chr12 98882634 98882694 -22374836 - 4.5SRNA scRNA scRNA -31 63 4 5 1339 2228 168 13 3 chr12 98882697 98883084 -22374446 + Lx2 LINE L1 6604 6994 -3 5 1339 731 194 88 26 chr12 98883153 98883380 -22374150 - Lx9 LINE L1 0 7644 7404 5 1339 302 352 47 0 chr12 98883670 98883798 -22373732 - MER110 LTR ERV1 -3 488 355 5 1339 4505 136 25 15 chr12 98883897 98884642 -22372888 + Lx2 LINE L1 6244 6996 -1 5 1339 743 293 35 25 chr12 98884836 98885039 -22372491 + B3 SINE B2 1 205 -11 5 1339 318 260 0 0 chr12 98885820 98885897 -22371633 + MLT2B4 LTR ERVL 1 77 -479 5 1339 738 349 44 35 chr12 98885838 98886218 -22371312 - MLT1-int LTR MaLR -150 1585 955 5 1339 779 345 68 41 chr12 98886681 98887197 -22370333 - MLT1-int LTR MaLR -836 535 6 5 1339 427 333 0 35 chr12 98888494 98888637 -22368893 + ID_B1 SINE B4 80 217 -7 5 1339 351 65 0 0 chr12 98888654 98888700 -22368830 + (CATA)n Simple_repeat Simple_repeat 2 47 0 5 1339 396 320 135 78 chr12 98888757 98889076 -22368454 + MLT1B LTR MaLR 2 338 -52 5 1339 183 42 0 0 chr12 98889410 98889434 -22368096 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1339 330 288 0 0 chr12 98891119 98891199 -22366331 + ID_B1 SINE B4 143 222 -2 5 1339 617 322 77 56 chr12 98891433 98891719 -22365811 - B4A SINE B4 0 292 1 5 1339 225 0 0 0 chr12 98892629 98892654 -22364876 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1339 328 319 106 0 chr12 98892720 98892833 -22364697 + B1F SINE Alu 17 141 -8 5 1339 905 322 4 4 chr12 98892906 98893180 -22364350 + B4A SINE B4 1 274 -18 5 1339 252 276 47 99 chr12 98894205 98894370 -22363160 - L2c LINE L2 0 3387 3199 5 1339 932 310 29 31 chr12 98894758 98895237 -22362293 + Lx6 LINE L1 120 597 -7131 5 1339 2211 227 21 23 chr12 98895278 98895842 -22361688 + Lx6 LINE L1 5669 6231 -1229 5 1339 2424 235 98 14 chr12 98895838 98896421 -22361109 + Lx6 LINE L1 6825 7456 -4 5 1339 3004 84 0 45 chr12 98896828 98897252 -22360278 - L1_Mus2 LINE L1 -1 6565 6161 5 1339 186 43 0 0 chr12 98897253 98897276 -22360254 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5 1339 515 306 12 12 chr12 98897293 98897455 -22360075 + B3 SINE B2 2 163 -53 5 1339 306 0 0 0 chr12 98897459 98897493 -22360037 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1339 298 246 0 0 chr12 98898075 98898132 -22359398 + B3 SINE B2 94 150 -66 5 1339 317 93 0 18 chr12 98898132 98898187 -22359343 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1339 245 70 0 44 chr12 98898343 98898388 -22359142 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1339 386 346 68 6 chr12 98898393 98898556 -22358974 - MTEa LTR MaLR -206 173 1 5 1339 270 0 0 0 chr12 98899141 98899171 -22358359 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1339 544 264 45 67 chr12 98899285 98899464 -22358066 + MLT1E3 LTR MaLR 62 236 -388 5 1339 432 319 171 27 chr12 98899674 98900003 -22357527 + MLT1E3 LTR MaLR 244 615 -12 5 1339 401 81 0 16 chr12 98900237 98900300 -22357230 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1339 786 109 0 0 chr12 98902105 98902233 -22355297 + (GA)n Simple_repeat Simple_repeat 1 128 0 5 1339 375 125 0 0 chr12 98903118 98903190 -22354340 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1339 733 259 88 0 chr12 98903699 98903869 -22353661 + B3 SINE B2 25 209 -7 5 1339 477 0 0 0 chr12 98903937 98903990 -22353540 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 5 1339 194 265 117 48 chr12 98904280 98904383 -22353147 + L2a LINE L2 3315 3424 -2 5 1339 272 344 38 56 chr12 98904428 98904588 -22352942 + L2c LINE L2 3223 3379 -8 5 1339 763 289 56 5 chr12 98904699 98904894 -22352636 - B4 SINE B4 -87 205 1 5 1339 3228 34 0 10 chr12 98905039 98905430 -22352100 - L1Md_F3 LINE L1 -14 6570 6184 5 1339 2435 50 3 0 chr12 98905430 98905748 -22351782 + L1Md_F3 LINE L1 5875 6193 -391 5 1339 940 99 46 0 chr12 98905805 98905957 -22351573 - Lx2 LINE L1 -1 6996 6838 5 1339 1148 225 67 70 chr12 98906545 98906918 -22350612 + ORR1D1 LTR MaLR 3 374 0 5 1339 21 57 0 0 chr12 98907200 98907235 -22350295 + AT_rich Low_complexity Low_complexity 1 35 0 5 1339 281 343 34 92 chr12 98907590 98907709 -22349821 - B1F SINE Alu -8 112 1 5 1339 274 164 63 32 chr12 98907764 98907827 -22349703 - ID4_ SINE ID -16 67 3 5 1339 977 195 65 32 chr12 98908070 98908287 -22349243 - URR1B DNA MER1_type 0 225 2 5 1339 37865 27 0 6 chr12 98908564 98914547 -22342983 - L1Md_T LINE L1 0 6582 642 5 1339 347 0 0 23 chr12 98914686 98914730 -22342800 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1339 325 16 31 46 chr12 98914921 98914986 -22342544 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 5 1339 388 306 26 68 chr12 98915767 98915963 -22341567 + B3 SINE B2 2 187 -29 5 1339 333 0 0 0 chr12 98915963 98916000 -22341530 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1339 305 281 31 69 chr12 98916000 98916014 -22341516 + B3A SINE B2 184 198 0 5 1339 286 341 23 12 chr12 98916155 98916241 -22341289 - PB1D10 SINE Alu -21 96 10 5 1339 33862 34 0 0 chr12 98916408 98921851 -22335679 + L1Md_T LINE L1 50 5589 -297 5 1339 9035 5 0 0 chr12 98921851 98922847 -22334683 + L1Md_T LINE L1 5590 6585 0 5 1339 180 0 0 0 chr12 98924189 98924209 -22333321 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1339 287 222 0 12 chr12 98924768 98924850 -22332680 + GA-rich Low_complexity Low_complexity 1 81 0 5 1339 203 262 21 131 chr12 98925441 98925586 -22331944 - L2a LINE L2 -284 3142 3014 5 1339 940 153 16 0 chr12 98925712 98925965 -22331565 + CT-rich Low_complexity Low_complexity 1 257 0 5 1339 210 37 0 0 chr12 98925985 98926012 -22331518 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 5 1339 453 141 30 0 chr12 98926413 98926512 -22331018 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 1339 236 54 54 0 chr12 98926612 98926649 -22330881 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1339 5681 90 8 12 chr12 98926652 98927454 -22330076 - L1_Mus4 LINE L1 -2 6634 5837 5 1339 3353 92 6 0 chr12 98927454 98927932 -22329598 + L1_Mus4 LINE L1 5373 5853 -30 5 1339 347 239 64 16 chr12 98928465 98928581 -22328949 - B3 SINE B2 -64 134 10 5 1339 455 269 29 58 chr12 98928792 98928930 -22328600 + B1_Mur4 SINE Alu 1 134 -16 5 1339 412 288 116 12 chr12 98928941 98929113 -22328417 + L1M4 LINE L1 5199 5388 -758 5 1339 3442 75 9 2 chr12 98929376 98929832 -22327698 - L1_Mus3 LINE L1 -10 6628 6170 5 1339 226 372 30 97 chr12 98929979 98930113 -22327417 - B1_Mm SINE Alu -21 126 2 5 1339 760 262 15 10 chr12 98930517 98930714 -22326816 + B3 SINE B2 5 202 -14 5 1339 250 340 0 117 chr12 98930957 98931137 -22326393 + RSINE1 SINE B4 5 163 -2 5 1339 222 232 169 34 chr12 98931682 98931771 -22325759 - MIRm SINE MIR -13 263 163 5 1339 640 316 29 36 chr12 98934048 98934324 -22323206 + B4A SINE B4 1 274 -18 5 1339 532 287 21 5 chr12 98934802 98934991 -22322539 - MER53 DNA hAT 0 193 2 5 1339 22 0 0 0 chr12 98936704 98936726 -22320804 + AT_rich Low_complexity Low_complexity 1 22 0 5 1339 222 37 0 0 chr12 98936911 98936938 -22320592 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1339 249 33 0 0 chr12 98936940 98936970 -22320560 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1339 876 327 56 17 chr12 98937276 98937634 -22319896 + MTEb LTR MaLR 4 375 -4 5 1339 324 319 62 55 chr12 98937661 98937933 -22319597 + B4 SINE B4 2 275 -17 6 1339 2640 155 26 73 chr12 98937949 98938023 -22319507 - RLTR28 LTR ERVL -6 518 470 6 1339 261 0 0 0 chr12 98938023 98938052 -22319478 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1339 2640 155 26 73 chr12 98938052 98938521 -22319009 - RLTR28 LTR ERVL -55 469 1 6 1339 789 11 0 0 chr12 98938570 98938660 -22318870 + (TC)n Simple_repeat Simple_repeat 1 90 0 6 1339 195 100 0 0 chr12 98938660 98938689 -22318841 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1339 598 332 20 27 chr12 98938695 98938989 -22318541 + B4A SINE B4 1 292 0 6 1339 497 305 67 140 chr12 98939031 98939551 -22317979 + RMER20B LTR ERVK 30 555 -72 6 1339 1957 199 8 8 chr12 98939684 98940064 -22317466 - RMER15 LTR ERVL -2 573 194 6 1339 1982 263 45 33 chr12 98940074 98940673 -22316857 - RMER19C LTR ERVK -5 606 1 6 1339 988 142 25 0 chr12 98940673 98940834 -22316696 - RMER15 LTR ERVL -410 165 1 6 1339 23 0 0 0 chr12 98941652 98941675 -22315855 + AT_rich Low_complexity Low_complexity 1 23 0 6 1339 189 0 0 0 chr12 98942765 98942786 -22314744 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1339 388 132 0 24 chr12 98942817 98942902 -22314628 + Lx LINE L1 6572 6654 0 6 1339 353 254 282 16 chr12 98942941 98943065 -22314465 + MIRb SINE MIR 33 189 -79 6 1339 589 323 60 19 chr12 98945311 98945579 -22311951 - B4A SINE B4 -12 280 2 6 1339 645 38 0 0 chr12 98947206 98947286 -22310244 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 6 1339 662 276 41 49 chr12 98947288 98947517 -22310013 + MTE-int LTR MaLR 1302 1528 -52 6 1339 251 360 75 43 chr12 98947517 98947703 -22309827 + ORR1E LTR MaLR 2 193 -166 6 1339 407 286 18 37 chr12 98947834 98947943 -22309587 - PB1D7 SINE Alu -8 112 6 6 1339 429 205 0 0 chr12 98947969 98948081 -22309449 + (CA)n Simple_repeat Simple_repeat 2 113 0 6 1339 421 248 152 38 chr12 98948908 98949067 -22308463 - ID_B1 SINE B4 -37 255 83 6 1339 686 294 115 41 chr12 98949303 98949693 -22307837 - Kanga1b DNA Tc2 -59 720 302 6 1339 289 362 35 70 chr12 98950612 98950784 -22306746 + LTR33 LTR ERVL 57 222 -293 6 1339 1670 115 67 0 chr12 98951132 98951401 -22306129 - L1_Mus3 LINE L1 0 6638 6352 6 1339 1923 197 25 16 chr12 98951900 98952267 -22305263 - MTC LTR MaLR -51 370 1 6 1339 5437 200 15 47 chr12 98952267 98953567 -22303963 - MTC-int LTR MaLR 0 1258 1 6 1339 2130 186 12 43 chr12 98953567 98953989 -22303541 - MTC LTR MaLR 0 421 13 6 1339 1526 260 124 17 chr12 98954259 98954856 -22302674 - Lx7 LINE L1 -16 7680 7036 6 1339 182 296 211 0 chr12 98955900 98955971 -22301559 + L4 LINE RTE 79 164 -1865 6 1339 283 286 113 31 chr12 98956867 98957026 -22300504 - MER46C DNA MER2_type -51 287 116 6 1339 4635 171 122 13 chr12 98958158 98959081 -22298449 + RLTR25B LTR ERVK 1 1024 -4 6 167 28 48 0 0 chr12 98959342 98959384 -22298146 + AT_rich Low_complexity Low_complexity 1 42 0 6 1340 264 323 60 18 chr12 98960041 98960208 -22297322 - L1MA4 LINE L1 -278 6022 5849 6 1340 323 365 141 10 chr12 98960533 98960846 -22296684 - L2a LINE L2 -47 3379 3026 6 1340 234 302 199 15 chr12 98960951 98961223 -22296307 - L2a LINE L2 -1633 1786 1465 6 1340 339 332 68 51 chr12 98962776 98962957 -22294573 - MIR SINE MIR -52 216 28 6 1340 585 315 122 43 chr12 98963080 98963641 -22293889 - MLT1E2 LTR MaLR -74 550 3 6 1340 19853 48 2 0 chr12 98963811 98966295 -22291235 - L1Md_F2 LINE L1 -356 5527 3040 6 1340 478 65 16 0 chr12 98966286 98966348 -22291182 + L1Md_F2 LINE L1 5524 5586 -297 6 1340 8065 44 2 4 chr12 98966348 98967343 -22290187 + L1Md_F2 LINE L1 5587 6579 -3 6 1340 3157 83 0 12 chr12 98967436 98967848 -22289682 - MTB_Mm LTR MaLR 0 407 1 6 1340 2292 260 83 30 chr12 98967969 98968802 -22288728 + Lx9 LINE L1 6760 7636 -8 6 1340 1091 122 15 36 chr12 98968852 98969048 -22288482 + B2_Mm2 SINE B2 2 193 -2 6 1340 867 273 17 65 chr12 98969745 98970035 -22287495 - B4 SINE B4 -5 287 12 6 1340 22 0 0 0 chr12 98971360 98971382 -22286148 + AT_rich Low_complexity Low_complexity 1 22 0 6 1340 267 239 28 0 chr12 98971759 98971830 -22285700 - LTR33A_ LTR ERVL -8 523 451 6 1340 552 30 0 0 chr12 98973481 98973547 -22283983 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1340 1516 208 74 49 chr12 98973620 98974010 -22283520 - MTD LTR MaLR -19 400 1 6 1340 266 369 36 48 chr12 98974695 98974860 -22282670 + RSINE1 SINE B4 3 165 0 6 1340 203 0 0 36 chr12 98974921 98974949 -22282581 + (TAA)n Simple_repeat Simple_repeat 2 28 0 6 1340 453 57 20 2 chr12 98974982 98975052 -22282478 + L1_Mm LINE L1 5538 5616 -696 6 1340 7962 53 3 0 chr12 98975052 98976044 -22281486 + L1Md_F2 LINE L1 5588 6582 0 6 1340 475 224 0 75 chr12 98976344 98976518 -22281012 + Lx9 LINE L1 7477 7637 -7 6 1340 198 0 0 0 chr12 98976695 98976717 -22280813 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 6 1340 387 298 91 52 chr12 98977978 98978307 -22279223 - LTR37B LTR ERV1 -6 462 121 6 1340 292 309 61 10 chr12 98978329 98978427 -22279103 + Lx8 LINE L1 7175 7277 -196 6 1340 228 289 12 24 chr12 98978368 98978453 -22279077 + RMER1C Other Other 1109 1192 -150 6 1340 432 0 0 0 chr12 98979577 98979625 -22277905 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1340 342 0 0 0 chr12 98979700 98979738 -22277792 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1340 471 35 0 0 chr12 98979738 98979794 -22277736 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1340 352 264 0 65 chr12 98980540 98980624 -22276906 - MER119 DNA MER1_type -227 356 279 6 1340 1036 37 0 0 chr12 98980624 98980759 -22276771 - L1Md_T LINE L1 -1 6581 6447 6 1340 244 416 78 0 chr12 98980786 98980952 -22276578 - MER119 DNA MER1_type -378 205 27 6 1340 2124 355 49 9 chr12 98981230 98982231 -22275299 + Lx8 LINE L1 6323 7343 -130 6 1340 327 49 0 0 chr12 98982231 98982272 -22275258 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1340 2124 355 49 9 chr12 98982272 98982348 -22275182 + Lx8 LINE L1 7344 7442 -31 6 1340 310 260 17 15 chr12 98982382 98982544 -22274986 + L1MA4 LINE L1 2056 2328 -4601 6 1340 6789 76 5 1 chr12 98982642 98983536 -22273994 + L1_Mus3 LINE L1 5736 6632 -6 6 1340 1127 295 56 24 chr12 98983538 98984356 -22273174 + L1MA4 LINE L1 2729 3576 -3269 6 1340 500 0 17 0 chr12 98984455 98984515 -22273015 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1340 382 331 8 16 chr12 98984515 98984641 -22272889 + RSINE1 SINE B4 6 130 -35 6 1340 1178 297 76 40 chr12 98984718 98985360 -22272170 + L1MA4 LINE L1 4545 5209 -1636 6 1340 284 271 0 0 chr12 98985360 98985430 -22272100 + GA-rich Low_complexity Low_complexity 1 70 0 6 1340 328 256 213 47 chr12 98985430 98985684 -22271846 + L1MA4 LINE L1 5185 5480 -1365 6 1340 579 246 8 8 chr12 98985768 98985887 -22271643 - RSINE1 SINE B4 -44 121 3 6 1340 419 262 26 32 chr12 98985973 98986127 -22271403 + L1MA4 LINE L1 5659 5811 -1034 6 1340 238 297 0 0 chr12 98986119 98986183 -22271347 - L1M3 LINE L1 -978 5162 5099 6 1340 721 339 173 14 chr12 98986186 98986713 -22270817 + L1MA4 LINE L1 5863 6463 -539 6 1340 225 0 0 0 chr12 98986713 98986738 -22270792 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 6 1340 721 339 80 7 chr12 98986738 98986954 -22270576 + L1MA4 LINE L1 6464 6704 -298 6 1340 198 191 0 0 chr12 98988327 98988369 -22269161 + GA-rich Low_complexity Low_complexity 4 45 0 6 1340 549 0 0 0 chr12 98989164 98989225 -22268305 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 6 1340 250 297 47 85 chr12 98989303 98989432 -22268098 + MT2B LTR ERVL 155 278 -323 6 1340 547 252 8 30 chr12 98989331 98989462 -22268068 + B1_Mur2 SINE Alu 21 148 -1 6 1340 204 269 48 71 chr12 98989695 98989779 -22267751 - MIRb SINE MIR -21 247 166 6 1340 397 365 97 12 chr12 98990429 98990770 -22266760 + Charlie4a DNA MER1_type 139 508 0 6 1340 249 33 0 0 chr12 98991091 98991121 -22266409 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1340 405 0 0 0 chr12 98991242 98991287 -22266243 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1340 319 340 24 65 chr12 98991528 98991698 -22265832 + RSINE1 SINE B4 3 165 0 6 1340 31 0 0 0 chr12 98992650 98992681 -22264849 + AT_rich Low_complexity Low_complexity 1 31 0 6 1340 369 0 0 0 chr12 98993194 98993235 -22264295 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1340 305 100 20 0 chr12 98993235 98993285 -22264245 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1340 388 343 43 29 chr12 98993601 98993739 -22263791 + RSINE1 SINE B4 26 165 0 6 1340 440 230 0 0 chr12 98993819 98993906 -22263624 + RMER2 LTR ERV1 1 87 -480 6 1340 2033 33 0 0 chr12 98993906 98994148 -22263382 - L1Md_F2 LINE L1 -652 5930 5689 6 1340 5207 42 5 2 chr12 98994148 98994788 -22262742 + L1Md_F2 LINE L1 5941 6582 0 6 1340 892 258 79 67 chr12 98994794 98995189 -22262341 + RMER2 LTR ERV1 72 567 0 6 1340 214 386 16 25 chr12 98996022 98996144 -22261386 - L3 LINE CR1 -190 4299 4179 6 1340 344 317 64 29 chr12 98996421 98996593 -22260937 - L1MC4a LINE L1 -20 7862 7685 6 1340 435 19 0 0 chr12 98997333 98997385 -22260145 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1340 308 316 267 25 chr12 98997578 98997941 -22259589 + L2 LINE L2 1590 2040 -1379 6 1340 615 335 45 16 chr12 98998118 98998357 -22259173 + B4A SINE B4 5 263 -29 6 1340 879 37 0 0 chr12 98998399 98998506 -22259024 + (TC)n Simple_repeat Simple_repeat 1 107 0 6 1340 375 23 0 0 chr12 98998506 98998550 -22258980 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1340 842 293 76 29 chr12 98998966 98999282 -22258248 + MLT1A1 LTR MaLR 2 332 -76 6 1340 315 0 0 0 chr12 98999449 98999484 -22258046 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1340 262 290 14 28 chr12 98999486 98999557 -22257973 - MTEb LTR MaLR -23 356 287 6 1340 665 43 0 11 chr12 99000561 99000655 -22256875 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 1 1340 22 0 0 0 chr12 99000850 99000872 -22256658 + AT_rich Low_complexity Low_complexity 1 22 0 2 1340 605 202 46 0 chr12 99000900 99001009 -22256521 - RSINE1 SINE B4 -36 129 16 3 1340 4718 223 42 73 chr12 99001756 99002973 -22254557 + Lx7 LINE L1 6308 7471 -225 4 1340 4368 12 0 0 chr12 99002973 99003455 -22254075 - LTRIS_Mm LTR ERV1 0 482 1 5 1340 4718 230 59 63 chr12 99003455 99003668 -22253862 + Lx7 LINE L1 7472 7651 -45 4 1340 629 312 97 13 chr12 99003691 99003968 -22253562 - MTE2b LTR MaLR 0 379 76 6 1340 212 0 36 0 chr12 99004452 99004480 -22253050 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 7 1340 210 71 0 0 chr12 99004764 99004792 -22252738 + (TC)n Simple_repeat Simple_repeat 2 29 0 8 1340 16607 59 11 2 chr12 99004851 99007840 -22249690 - L1Md_F2 LINE L1 0 6582 3561 9 1340 1148 159 0 8 chr12 99007843 99008077 -22249453 - L1Md_Gf LINE L1 -6013 509 278 1 1340 32 0 0 0 chr12 99008091 99008123 -22249407 + AT_rich Low_complexity Low_complexity 1 32 0 1 1340 6850 100 14 2 chr12 99008204 99009219 -22248311 + L1_Mus4 LINE L1 5603 6629 -7 1 1340 255 31 0 0 chr12 99009330 99009362 -22248168 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1340 204 146 21 43 chr12 99009461 99009554 -22247976 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1340 310 220 176 83 chr12 99009727 99009801 -22247729 - RMER17C LTR ERVK -135 275 184 1 1340 582 54 0 0 chr12 99009801 99009875 -22247655 + (GGGGA)n Simple_repeat Simple_repeat 2 75 0 1 1340 1110 125 0 0 chr12 99009878 99010054 -22247476 + (GAGAA)n Simple_repeat Simple_repeat 3 178 0 1 1340 310 220 176 83 chr12 99010054 99010168 -22247362 - RMER17C LTR ERVK -227 183 68 1 1340 523 325 56 69 chr12 99010340 99010660 -22246870 + MLT1A LTR MaLR 53 368 -6 1 1340 572 296 68 65 chr12 99011856 99012049 -22245481 - Lx8 LINE L1 -29 7444 7240 1 1340 231 36 0 0 chr12 99012049 99012077 -22245453 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 2 1340 572 296 68 65 chr12 99012077 99012237 -22245293 - Lx8 LINE L1 -234 7239 7090 1 1340 2092 113 6 66 chr12 99012493 99012843 -22244687 - ORR1A4 LTR MaLR 0 329 1 2 1340 542 75 0 12 chr12 99012869 99012950 -22244580 + (CTA)n Simple_repeat Simple_repeat 1 80 0 2 1340 369 0 0 0 chr12 99013642 99013683 -22243847 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1340 641 194 6 0 chr12 99013683 99013843 -22243687 + (TG)n Simple_repeat Simple_repeat 1 161 0 2 1340 478 333 106 16 chr12 99013950 99014139 -22243391 - B4A SINE B4 -64 228 23 2 1340 1481 194 59 104 chr12 99014143 99014499 -22243031 + ORR1B1 LTR MaLR 42 381 -13 2 1340 2164 207 5 2 chr12 99014500 99014917 -22242613 + ORR1B1-int LTR MaLR 2 419 -1544 2 1340 1445 152 92 18 chr12 99014908 99015190 -22242340 + RLTR17 LTR ERVK 320 622 -70 2 1340 5950 163 59 153 chr12 99015211 99016945 -22240585 + ORR1B1-int LTR MaLR 392 1963 0 2 1340 1557 204 42 51 chr12 99016952 99017308 -22240222 + ORR1B1 LTR MaLR 41 393 -1 2 1340 331 262 90 36 chr12 99017407 99017518 -22240012 + MER5A1 DNA MER1_type 46 162 -4 2 1340 252 0 0 0 chr12 99017633 99017661 -22239869 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1340 321 227 0 57 chr12 99018058 99018128 -22239402 + ID4_ SINE ID 1 66 -17 3 1340 283 324 0 0 chr12 99018135 99018237 -22239293 + GA-rich Low_complexity Low_complexity 2 103 0 3 1340 1088 320 79 39 chr12 99018839 99019373 -22238157 - MER34A1 LTR ERV1 0 587 33 3 1340 528 207 4 15 chr12 99020063 99020179 -22237351 + MTC LTR MaLR 249 416 -5 3 1340 212 268 0 67 chr12 99020174 99020234 -22237296 + ID4_ SINE ID 25 80 -3 3 1340 373 339 40 13 chr12 99020389 99020608 -22236922 - MIR SINE MIR -18 250 32 3 1340 309 419 69 6 chr12 99022108 99022281 -22235249 - MLT1A1 LTR MaLR -224 184 1 3 1340 474 65 0 0 chr12 99022769 99022831 -22234699 + (TTA)n Simple_repeat Simple_repeat 2 63 0 3 1340 258 32 0 0 chr12 99023710 99023741 -22233789 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1340 251 334 112 40 chr12 99025029 99025197 -22232333 + MIRb SINE MIR 35 219 -49 3 1340 324 323 11 0 chr12 99025348 99025441 -22232089 - ID_B1 SINE B4 -130 94 1 4 1340 336 320 15 23 chr12 99025519 99025650 -22231880 + MIRc SINE MIR 38 167 -101 4 1340 273 234 0 25 chr12 99026384 99026422 -22231108 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 4 1340 2041 148 58 22 chr12 99026422 99026787 -22230743 + ORR1C1 LTR MaLR 1 378 0 4 1340 273 234 0 25 chr12 99026787 99026827 -22230703 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 4 1340 183 420 0 0 chr12 99027449 99027549 -22229981 - L2c LINE L2 -40 3347 3248 4 1340 397 362 92 0 chr12 99028308 99028515 -22229015 - MLT1C LTR MaLR -1 466 241 4 1340 638 292 29 29 chr12 99028517 99028690 -22228840 + B3 SINE B2 1 173 -43 4 1340 284 299 14 76 chr12 99028754 99028899 -22228631 - MLT1C LTR MaLR -179 211 76 4 1340 21 0 0 0 chr12 99029183 99029204 -22228326 + AT_rich Low_complexity Low_complexity 1 21 0 4 1340 645 300 70 33 chr12 99029206 99029478 -22228052 + B4A SINE B4 3 284 -8 4 1340 468 0 0 0 chr12 99029506 99029558 -22227972 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1340 299 333 0 0 chr12 99029793 99029862 -22227668 + BC1_Mm scRNA scRNA 2 70 -82 5 1340 25 0 0 0 chr12 99030504 99030529 -22227001 + AT_rich Low_complexity Low_complexity 1 25 0 5 1340 334 214 29 0 chr12 99032395 99032465 -22225065 - B1F1 SINE Alu -77 72 1 5 1340 1922 106 9 71 chr12 99033210 99033534 -22223996 + Lx3A LINE L1 6675 6978 -3 5 1340 249 222 0 0 chr12 99033543 99033597 -22223933 + A-rich Low_complexity Low_complexity 1 54 0 5 1340 992 83 0 7 chr12 99033651 99033796 -22223734 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 5 1340 753 284 65 27 chr12 99034036 99034433 -22223097 - L1MA4 LINE L1 -372 5928 5493 5 1340 355 359 99 18 chr12 99034786 99035007 -22222523 - L1MEd LINE L1 -5005 1114 876 5 1340 3857 198 102 30 chr12 99035299 99036246 -22221284 - Lx4B LINE L1 -4 7054 6039 5 1340 191 400 66 9 chr12 99037616 99037722 -22219808 + MIR3 SINE MIR 71 182 -26 6 1340 3387 63 29 0 chr12 99039252 99039697 -22217833 - L1_Mus3 LINE L1 -7 6631 6174 6 1340 262 333 0 0 chr12 99039933 99040011 -22217519 - MLT1J LTR MaLR -342 170 93 6 1340 327 288 112 0 chr12 99040440 99040600 -22216930 - L1MCa LINE L1 -4200 2308 2131 6 1340 1260 34 0 0 chr12 99040600 99040747 -22216783 - B1_Mus2 SINE Alu 0 147 1 6 1340 371 248 28 9 chr12 99041502 99041608 -22215922 + PB1D7 SINE Alu 5 112 -8 6 1340 315 319 21 36 chr12 99042549 99042633 -22214897 + Lx8 LINE L1 7265 7348 -125 6 1340 186 43 0 0 chr12 99042633 99042656 -22214874 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1340 315 319 21 36 chr12 99042656 99042763 -22214767 + Lx8 LINE L1 7349 7452 -21 6 1340 7225 79 0 1 chr12 99043395 99044540 -22212990 + L1_Mus2 LINE L1 5423 6566 0 6 1340 1517 117 41 12 chr12 99044643 99044885 -22212645 + RLTR15 LTR ERVK 111 359 0 6 1340 383 363 62 19 chr12 99045056 99045264 -22212266 - MIR SINE MIR -17 245 29 7 1340 770 228 55 0 chr12 99046163 99046382 -22211148 + Lx9 LINE L1 7405 7635 -9 7 1340 824 299 119 20 chr12 99046756 99047067 -22210463 - ORR1E LTR MaLR -2 377 9 7 1340 286 235 24 56 chr12 99047385 99047511 -22210019 + GA-rich Low_complexity Low_complexity 3 124 0 7 1340 646 174 174 0 chr12 99047602 99047757 -22209773 + Lx2 LINE L1 6815 6996 -1 7 1340 644 296 110 54 chr12 99047830 99048165 -22209365 + MTEa LTR MaLR 3 356 -23 7 1340 222 37 0 0 chr12 99048413 99048440 -22209090 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1340 261 321 15 0 chr12 99048644 99048781 -22208749 + (TA)n Simple_repeat Simple_repeat 2 140 0 7 1340 331 211 79 0 chr12 99048794 99048870 -22208660 - MLT2B4 LTR ERVL -415 141 60 7 1340 1152 268 68 15 chr12 99049017 99049415 -22208115 - MTD LTR MaLR 0 419 1 7 1340 359 312 62 39 chr12 99049540 99049732 -22207798 + MIRb SINE MIR 43 242 -26 8 1340 626 165 0 12 chr12 99050943 99051109 -22206421 + (TAGA)n Simple_repeat Simple_repeat 3 166 0 8 1340 560 150 0 8 chr12 99051111 99051239 -22206291 + (TG)n Simple_repeat Simple_repeat 2 128 0 8 1340 781 290 123 33 chr12 99051303 99051635 -22205895 - MLT2D LTR ERVL -50 364 3 8 1340 186 346 170 22 chr12 99051651 99052056 -22205474 - L2 LINE L2 -407 3012 2548 8 1340 1761 122 31 28 chr12 99052444 99052765 -22204765 + RLTRETN_Mm LTR ERVK 1 322 0 8 1340 531 0 0 0 chr12 99052881 99052940 -22204590 + (TAAAA)n Simple_repeat Simple_repeat 3 61 0 8 1340 1695 20 5 0 chr12 99052971 99053172 -22204358 + L1Md_F3 LINE L1 6366 6567 -17 8 1340 315 0 0 0 chr12 99053382 99053417 -22204113 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1340 318 303 114 70 chr12 99053437 99053710 -22203820 - B4A SINE B4 -7 285 1 8 1340 666 297 11 6 chr12 99054687 99054863 -22202667 - MTE2a LTR MaLR -9 370 194 9 1340 2329 150 8 8 chr12 99054891 99055267 -22202263 + RLTR14 LTR ERV1 7 382 0 9 1340 516 300 90 43 chr12 99055272 99055460 -22202070 - MTE2a LTR MaLR -182 197 1 9 1340 525 191 0 0 chr12 99056439 99056544 -22200986 + (CA)n Simple_repeat Simple_repeat 2 106 0 9 1340 34935 74 1 25 chr12 99058070 99064578 -22192952 + L1Md_T LINE L1 99 5586 -297 9 1340 7974 59 0 0 chr12 99064578 99065640 -22191890 + L1Md_T LINE L1 5587 6582 0 9 1340 405 300 112 82 chr12 99065882 99066078 -22191452 + MLT1E2 LTR MaLR 3 204 -423 9 1340 416 321 70 150 chr12 99066116 99066289 -22191241 - MLT1B LTR MaLR 0 390 257 9 1340 771 200 71 40 chr12 99066289 99066487 -22191043 - B3 SINE B2 -12 204 1 9 1340 416 321 70 150 chr12 99066487 99066713 -22190817 - MLT1B LTR MaLR -134 256 23 9 1340 199 378 36 46 chr12 99067043 99067237 -22190293 - MIRm SINE MIR -14 262 71 9 1340 470 315 93 27 chr12 99067320 99067503 -22190027 + B3A SINE B2 2 196 -2 9 1340 24 0 0 0 chr12 99068038 99068062 -22189468 + AT_rich Low_complexity Low_complexity 1 24 0 9 1340 525 32 0 0 chr12 99068826 99068889 -22188641 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1340 26 0 0 0 chr12 99069224 99069250 -22188280 + AT_rich Low_complexity Low_complexity 1 26 0 1 1340 417 277 30 48 chr12 99069756 99069923 -22187607 - RNLTR23 LTR ERVK 0 642 479 1 1340 270 303 169 46 chr12 99070404 99070672 -22186858 - ORR1D2 LTR MaLR -57 302 6 1 1340 21 0 0 0 chr12 99071091 99071112 -22186418 + AT_rich Low_complexity Low_complexity 1 21 0 1 1340 1133 280 56 20 chr12 99072042 99072344 -22185186 - MTD LTR MaLR -89 330 18 1 1340 249 304 42 62 chr12 99072356 99072500 -22185030 + ORR1D1 LTR MaLR 230 370 -4 1 1340 26 0 0 0 chr12 99073248 99073274 -22184256 + AT_rich Low_complexity Low_complexity 1 26 0 1 1340 1923 256 143 25 chr12 99073274 99074050 -22183480 - Lx7 LINE L1 0 7696 6829 1 1340 376 301 88 22 chr12 99076544 99076680 -22180850 + L1MCa LINE L1 814 958 -5550 1 1340 566 315 101 22 chr12 99076703 99076930 -22180600 + B4A SINE B4 43 287 -5 1 1340 294 95 0 0 chr12 99077063 99077105 -22180425 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 1 1340 6511 158 42 55 chr12 99077122 99078976 -22178554 - Lx5 LINE L1 -37 7013 5143 1 1340 3946 152 55 32 chr12 99078976 99079998 -22177532 + RLTR13D1 LTR ERVK 1 1023 0 1 1340 906 177 0 0 chr12 99079998 99080173 -22177357 - Lx5 LINE L1 -731 5149 4975 1 1340 409 335 90 9 chr12 99080184 99080395 -22177135 + L1MC2 LINE L1 6116 6343 -1 1 1340 3787 66 6 10 chr12 99081092 99081594 -22175936 - L1_Mus2 LINE L1 -1 6565 6066 1 1340 492 62 0 0 chr12 99081778 99081842 -22175688 + (GAGAA)n Simple_repeat Simple_repeat 2 65 0 1 1340 989 286 34 52 chr12 99081888 99082216 -22175314 - MTE2a LTR MaLR -19 360 39 1 1340 310 163 0 7 chr12 99082291 99082349 -22175181 - MTE2a LTR MaLR -366 55 1 1 1340 3600 144 25 3 chr12 99083489 99084095 -22173435 - Lx3B LINE L1 -95 6878 6260 1 1340 8126 105 14 43 chr12 99084120 99084143 -22173387 - Lx3A LINE L1 0 6981 6967 1 1340 405 58 0 0 chr12 99084143 99084195 -22173335 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1 1340 8126 105 14 43 chr12 99084195 99085453 -22172077 - Lx3A LINE L1 -15 6966 5737 1 1340 757 251 39 22 chr12 99085474 99085642 -22171888 + B3A SINE B2 12 185 -13 1 1340 222 37 0 0 chr12 99085642 99085669 -22171861 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1340 435 207 7 19 chr12 99086390 99086510 -22171020 - RLTR31A_Mm LTR ERVK 0 584 439 1 1340 1480 119 30 8 chr12 99086531 99086768 -22170762 - RLTR31A_Mm LTR ERVK -215 369 128 1 1340 433 299 55 14 chr12 99087134 99087280 -22170250 - MER5A1 DNA MER1_type -2 164 13 1 1340 1362 327 143 31 chr12 99087420 99088105 -22169425 - MER21B LTR ERV1 -87 776 15 1 1340 267 146 76 68 chr12 99088980 99089098 -22168432 + (TTATA)n Simple_repeat Simple_repeat 3 121 0 1 1340 534 119 0 0 chr12 99089486 99089570 -22167960 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1340 210 91 0 0 chr12 99089751 99089784 -22167746 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1340 320 267 90 29 chr12 99090219 99090366 -22167164 + MIRb SINE MIR 8 164 -112 1 1341 422 79 16 0 chr12 99091254 99091317 -22166213 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1341 490 301 108 20 chr12 99091352 99091603 -22165927 - B4A SINE B4 -18 274 2 1 1341 201 316 114 0 chr12 99091624 99091703 -22165827 + MIRb SINE MIR 136 223 -45 1 1341 1494 133 132 16 chr12 99091831 99092355 -22165175 + RMER6A LTR ERVK 1 745 -11 1 1341 649 247 59 64 chr12 99092582 99092785 -22164745 - B3A SINE B2 -1 215 14 1 1341 21 0 0 0 chr12 99093028 99093049 -22164481 + AT_rich Low_complexity Low_complexity 1 21 0 1 1341 2095 108 12 60 chr12 99093365 99093700 -22163830 - ORR1A2 LTR MaLR -8 319 1 1 1341 985 254 70 103 chr12 99095015 99095384 -22162146 + ORR1D1 LTR MaLR 18 374 0 1 1341 211 155 0 65 chr12 99096104 99096166 -22161364 + T-rich Low_complexity Low_complexity 5 62 0 1 1341 622 250 128 51 chr12 99097668 99097925 -22159605 + B4 SINE B4 2 278 -14 1 1341 200 217 50 0 chr12 99097934 99097994 -22159536 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1 1341 213 39 0 0 chr12 99098019 99098045 -22159485 + (TAA)n Simple_repeat Simple_repeat 3 28 0 1 1341 578 338 35 25 chr12 99098050 99098335 -22159195 + B4A SINE B4 3 290 -2 1 1341 378 309 8 60 chr12 99099144 99099278 -22158252 + MT2A LTR ERVL 336 462 -71 1 1341 289 304 32 86 chr12 99099874 99100061 -22157469 - ORR1D2 LTR MaLR -48 322 146 1 1341 263 271 222 15 chr12 99100094 99100229 -22157301 - ORR1D2 LTR MaLR -194 165 3 1 1341 692 143 0 8 chr12 99100276 99100403 -22157127 + CT-rich Low_complexity Low_complexity 2 127 0 1 1341 1464 152 4 0 chr12 99100410 99100654 -22156876 - Lx2B LINE L1 -2 6998 6754 1 1341 315 0 0 0 chr12 99100963 99100998 -22156532 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1341 411 73 0 0 chr12 99100998 99101052 -22156478 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1341 27 0 0 0 chr12 99101054 99101081 -22156449 + AT_rich Low_complexity Low_complexity 1 27 0 1 1341 201 175 0 0 chr12 99101205 99101245 -22156285 + A-rich Low_complexity Low_complexity 1 40 0 1 1341 210 184 81 0 chr12 99101569 99101656 -22155874 + (CATATA)n Simple_repeat Simple_repeat 6 99 0 1 1341 183 162 0 0 chr12 99101863 99101900 -22155630 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1341 212 255 0 10 chr12 99101979 99102082 -22155448 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 1341 561 306 53 14 chr12 99102162 99102371 -22155159 + MLT1A1 LTR MaLR 192 408 0 1 1341 25 51 0 0 chr12 99102513 99102552 -22154978 + AT_rich Low_complexity Low_complexity 1 39 0 1 1341 1146 78 0 0 chr12 99102564 99102731 -22154799 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 1341 517 373 7 7 chr12 99102732 99102883 -22154647 - RSINE1 SINE B4 -12 153 3 1 1341 237 219 39 47 chr12 99103168 99103297 -22154233 + (TTATA)n Simple_repeat Simple_repeat 1 128 0 1 1341 339 336 130 15 chr12 99103994 99104263 -22153267 + L1M4 LINE L1 4700 4999 -1147 1 1341 209 154 51 0 chr12 99104264 99104303 -22153227 + GA-rich Low_complexity Low_complexity 3 43 0 1 1341 23 0 0 0 chr12 99104416 99104439 -22153091 + AT_rich Low_complexity Low_complexity 1 23 0 1 1341 7002 53 8 0 chr12 99104495 99105368 -22152162 + L1Md_F2 LINE L1 5702 6581 -1 1 1341 905 312 77 7 chr12 99105466 99106034 -22151496 - L1MA4A LINE L1 -385 5918 5302 1 1341 747 296 113 24 chr12 99106126 99106870 -22150660 + L1MC4a LINE L1 6701 7510 -372 1 1341 1500 147 108 7 chr12 99106911 99107206 -22150324 + ORR1A4 LTR MaLR 1 325 -4 1 1341 1933 129 21 0 chr12 99107215 99107502 -22150028 + MERVL_2A-int LTR ERVL 4229 4521 -1240 1 1341 245 217 0 0 chr12 99107524 99107570 -22149960 + ID_B1 SINE B4 107 152 -72 1 1341 219 264 10 125 chr12 99107570 99107628 -22149902 + PB1D10 SINE Alu 26 117 0 1 1341 591 15 0 0 chr12 99107926 99107994 -22149536 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1341 314 275 37 22 chr12 99108545 99108679 -22148851 - L1ME2z LINE L1 -118 6326 6191 1 1341 590 112 22 29 chr12 99109044 99109182 -22148348 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 1 1341 1029 185 227 28 chr12 99109228 99109466 -22148064 + Lx9 LINE L1 7212 7477 -167 1 1341 558 79 0 0 chr12 99109466 99109542 -22147988 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1341 1029 185 227 28 chr12 99109542 99109664 -22147866 + Lx9 LINE L1 7478 7643 -1 1 1341 410 181 0 21 chr12 99110586 99110682 -22146848 + CT-rich Low_complexity Low_complexity 3 96 0 1 1341 761 145 0 22 chr12 99114631 99114814 -22142716 + CT-rich Low_complexity Low_complexity 2 180 0 1 1341 2259 110 6 0 chr12 99115326 99115643 -22141887 - ORR1A2 LTR MaLR -8 319 1 1 1341 276 285 44 50 chr12 99115644 99115803 -22141727 + Lx6 LINE L1 7299 7456 -4 1 1341 324 383 28 7 chr12 99116310 99116452 -22141078 - L3 LINE CR1 -193 4296 4152 1 1341 1133 141 109 20 chr12 99116993 99117195 -22140335 - URR1A DNA MER1_type -6 220 1 1 1341 206 354 119 22 chr12 99117392 99117577 -22139953 - L3 LINE CR1 -899 3590 3388 1 1341 371 257 61 9 chr12 99117664 99117778 -22139752 - MLT2B2 LTR ERVL -14 548 429 1 1341 946 84 7 7 chr12 99117883 99117905 -22139625 + (GAA)n Simple_repeat Simple_repeat 3 24 0 1 1341 1455 39 0 0 chr12 99117905 99118083 -22139447 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 1 1341 946 84 7 7 chr12 99118083 99118203 -22139327 + (GAA)n Simple_repeat Simple_repeat 1 121 0 1 1341 744 175 81 6 chr12 99118212 99118378 -22139152 - MLT2B2 LTR ERVL -387 169 1 1 1341 203 271 41 41 chr12 99118614 99118687 -22138843 - MIRc SINE MIR -109 167 92 1 1341 29 84 0 0 chr12 99118868 99118939 -22138591 + AT_rich Low_complexity Low_complexity 1 71 0 1 1341 724 355 102 30 chr12 99119089 99119461 -22138069 - MER45B DNA Tip100 -483 557 159 1 1341 1464 254 70 8 chr12 99119532 99119889 -22137641 + MTE2b LTR MaLR 1 379 0 1 1341 36 0 0 0 chr12 99120005 99120041 -22137489 + AT_rich Low_complexity Low_complexity 1 36 0 1 1341 332 275 117 32 chr12 99120048 99120142 -22137388 + PB1D10 SINE Alu 11 112 -5 1 1341 333 0 0 0 chr12 99120223 99120260 -22137270 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1341 352 293 114 64 chr12 99120331 99120550 -22136980 + L2a LINE L2 3193 3422 -4 1 1341 288 0 0 0 chr12 99121811 99121843 -22135687 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1341 207 0 0 0 chr12 99121852 99121875 -22135655 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1341 275 314 126 53 chr12 99122137 99122399 -22135131 - B4 SINE B4 -10 282 2 1 1341 2346 306 49 39 chr12 99122499 99123446 -22134084 - Lx8 LINE L1 -4 7469 6514 1 1341 438 20 0 0 chr12 99123447 99123498 -22134032 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1341 1870 311 69 30 chr12 99123549 99124413 -22133117 + Lx8 LINE L1 6628 7445 -28 1 1341 417 326 119 46 chr12 99124797 99125402 -22132128 - L1M2 LINE L1 -834 5309 4661 1 1341 1392 114 10 0 chr12 99125410 99125603 -22131927 - B2_Mm2 SINE B2 0 195 1 1 1341 280 128 28 47 chr12 99125621 99125728 -22131802 + T-rich Low_complexity Low_complexity 1 105 0 1 1341 1300 47 0 0 chr12 99125728 99125876 -22131654 - B1_Mus1 SINE Alu 0 148 1 2 1341 1510 155 180 3 chr12 99126130 99126447 -22131083 - ORR1B1 LTR MaLR 0 394 22 2 1341 249 301 200 16 chr12 99129890 99130015 -22127515 - MIRc SINE MIR -13 255 108 2 1341 375 78 0 0 chr12 99130350 99130401 -22127129 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1341 201 197 0 184 chr12 99131221 99131308 -22126222 + L2 LINE L2 2797 2867 -552 2 1341 357 247 96 112 chr12 99131547 99131734 -22125796 - MLT1C LTR MaLR -228 239 56 2 1341 196 54 81 0 chr12 99133208 99133245 -22124285 + (GGAGAA)n Simple_repeat Simple_repeat 3 42 0 2 1341 190 306 31 31 chr12 99136645 99136709 -22120821 - L3 LINE CR1 -24 4465 4402 2 1341 328 344 83 36 chr12 99136939 99137132 -22120398 - L3 LINE CR1 -310 4179 3978 2 1341 297 267 48 32 chr12 99137965 99138089 -22119441 - L1M2 LINE L1 -627 5685 5560 2 1341 762 341 70 31 chr12 99138235 99138622 -22118908 + MLT1A1 LTR MaLR 1 402 -6 2 1341 6423 50 0 1 chr12 99139276 99140055 -22117475 - L1_Mm LINE L1 -719 5164 4387 2 1341 262 201 93 22 chr12 99140875 99140990 -22116540 - B3 SINE B2 -6 210 2 2 1341 3060 93 17 7 chr12 99141129 99141588 -22115942 - L1_Mus3 LINE L1 0 6638 6213 2 1341 239 308 0 33 chr12 99141588 99141671 -22115859 + T-rich Low_complexity Low_complexity 3 83 0 2 1341 21 0 0 0 chr12 99141929 99141950 -22115580 + AT_rich Low_complexity Low_complexity 1 21 0 2 1341 234 250 65 13 chr12 99142057 99142134 -22115396 + L1M2 LINE L1 2280 2360 -3520 2 1341 409 342 21 13 chr12 99142641 99142875 -22114655 + L1M2 LINE L1 2552 2787 -3356 2 1341 400 299 80 23 chr12 99142911 99143130 -22114400 + L1M2 LINE L1 4747 5023 -1120 2 1341 1993 151 15 0 chr12 99143132 99143456 -22114074 - MTC LTR MaLR -90 331 3 2 1341 414 0 0 0 chr12 99143774 99143820 -22113710 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1341 203 272 60 24 chr12 99144195 99144278 -22113252 - MIR SINE MIR -2 260 175 2 1341 1194 308 59 26 chr12 99144575 99145032 -22112498 - MER70A LTR ERVL 0 472 1 2 1341 501 26 65 0 chr12 99145418 99145495 -22112035 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 2 1341 888 322 48 0 chr12 99145675 99145964 -22111566 - MER2 DNA MER2_type -42 303 1 2 1341 21 0 0 0 chr12 99146289 99146310 -22111220 + AT_rich Low_complexity Low_complexity 1 21 0 2 1341 697 188 14 0 chr12 99146391 99146529 -22111001 - Lx7 LINE L1 0 7696 7557 2 1341 462 61 0 0 chr12 99146543 99146609 -22110921 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1341 435 320 69 41 chr12 99146899 99147059 -22110471 + Charlie10 DNA MER1_type 18 182 -2640 2 1341 2208 161 17 38 chr12 99147059 99147478 -22110052 - RMER17C LTR ERVK 0 410 1 2 1341 435 320 69 41 chr12 99147478 99147535 -22109995 + Charlie10 DNA MER1_type 183 241 -2581 2 1341 557 288 62 56 chr12 99147575 99147770 -22109760 - RMER30 DNA MER1_type -6 196 1 2 1341 3031 171 9 30 chr12 99148206 99148744 -22108786 + RLTR11A2 LTR ERVK 1 527 0 2 1341 227 245 20 0 chr12 99148787 99148836 -22108694 + GA-rich Low_complexity Low_complexity 3 52 0 2 1341 340 81 58 11 chr12 99148876 99148963 -22108567 + T-rich Low_complexity Low_complexity 5 95 0 2 1341 1278 34 7 0 chr12 99148963 99149109 -22108421 - B1_Mus1 SINE Alu 0 148 2 2 1341 254 302 52 32 chr12 99149527 99149681 -22107849 + LTR86A2 LTR ERVL 107 263 -245 2 1341 1051 242 74 7 chr12 99150986 99151256 -22106274 + Lx8 LINE L1 6990 7277 -196 2 1341 200 262 16 47 chr12 99152120 99152173 -22105357 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1341 1364 51 6 0 chr12 99152173 99152350 -22105180 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 2 1341 200 262 16 47 chr12 99152350 99152360 -22105170 + (CA)n Simple_repeat Simple_repeat 1 8 0 2 1341 224 336 40 79 chr12 99153068 99153194 -22104336 - L2c LINE L2 0 3387 3267 2 1341 937 315 29 29 chr12 99153480 99153823 -22103707 - MLT1A LTR MaLR 0 374 32 2 1341 261 312 39 39 chr12 99154937 99155067 -22102463 - MLT1A0 LTR MaLR 0 365 236 2 1341 441 265 138 114 chr12 99156129 99156427 -22101103 + MLT1D LTR MaLR 187 491 -14 2 1341 22 56 0 0 chr12 99156935 99156971 -22100559 + AT_rich Low_complexity Low_complexity 1 36 0 2 1341 205 277 168 11 chr12 99157090 99157185 -22100345 - MIRc SINE MIR -120 148 39 2 1341 1291 47 0 0 chr12 99160583 99160731 -22096799 - B1_Mus1 SINE Alu 0 148 1 2 1341 16964 22 0 0 chr12 99160768 99163381 -22094149 - L1Md_T LINE L1 0 6582 3969 2 1341 509 33 0 0 chr12 99163380 99163441 -22094089 + L1Md_T LINE L1 3888 3948 -1935 2 1341 289 286 205 43 chr12 99163763 99163997 -22093533 + B4A SINE B4 4 275 -17 2 1341 456 19 0 0 chr12 99164036 99164089 -22093441 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1341 491 0 17 0 chr12 99164089 99164147 -22093383 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1341 1934 156 23 72 chr12 99164147 99164576 -22092954 - RMER17C LTR ERVK -2 408 1 2 1341 772 225 46 46 chr12 99164727 99164923 -22092607 + B3A SINE B2 3 198 0 2 1341 418 271 91 27 chr12 99165115 99165196 -22092334 - RMER17C LTR ERVK -104 306 181 2 1341 882 107 0 0 chr12 99165196 99165346 -22092184 + (GA)n Simple_repeat Simple_repeat 2 151 0 2 1341 418 196 180 24 chr12 99165346 99165492 -22092038 - RMER17C LTR ERVK -230 180 6 2 1341 227 188 74 12 chr12 99165910 99165991 -22091539 + LTR37A LTR ERV1 329 414 -12 2 1341 396 0 0 0 chr12 99166035 99166079 -22091451 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1341 211 241 33 33 chr12 99166132 99166192 -22091338 - RSINE1 SINE B4 -104 61 2 2 1341 279 0 0 0 chr12 99166477 99166508 -22091022 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2 1341 656 114 0 103 chr12 99166530 99166676 -22090854 - Lx3A LINE L1 -2 6979 6849 2 1341 246 255 191 37 chr12 99166766 99167039 -22090491 + RMER17C LTR ERVK 47 361 -49 2 1341 1030 235 61 46 chr12 99167137 99167463 -22090067 - L1MC1 LINE L1 -8 6325 5995 2 1341 843 309 36 30 chr12 99167465 99167802 -22089728 - L1MD3 LINE L1 -312 7683 7345 2 1341 452 274 54 41 chr12 99168199 99168420 -22089110 - L1MD3 LINE L1 -772 7110 6887 2 1341 197 284 13 39 chr12 99168502 99168579 -22088951 - MIR SINE MIR 0 262 188 2 1341 438 108 0 0 chr12 99168741 99168806 -22088724 + (CCA)n Simple_repeat Simple_repeat 1 65 0 2 1341 2884 159 47 63 chr12 99169097 99169635 -22087895 - RLTR24 LTR ERV1 0 529 1 2 1341 551 300 0 0 chr12 99169710 99169840 -22087690 - ID_B1 SINE B4 -1 223 94 2 1341 508 321 46 21 chr12 99171175 99171369 -22086161 + MamGypLTR1a LTR Gypsy 571 769 -15 2 1341 3571 43 0 5 chr12 99171710 99172108 -22085422 + MTA_Mm LTR MaLR 1 396 0 2 1341 237 83 0 0 chr12 99172685 99172721 -22084809 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1341 252 0 0 0 chr12 99172738 99172766 -22084764 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 2 1341 267 360 35 42 chr12 99172868 99173010 -22084520 + MIRb SINE MIR 37 181 -87 2 1341 3675 23 2 0 chr12 99173101 99173496 -22084034 - MTA_Mm LTR MaLR 0 396 1 2 1341 1026 228 84 20 chr12 99173496 99173726 -22083804 + B4A SINE B4 2 245 -47 2 1341 336 305 21 10 chr12 99174350 99174446 -22083084 + MTEa LTR MaLR 4 100 -259 2 1341 386 244 78 99 chr12 99174535 99174676 -22082854 + MTEa LTR MaLR 240 377 -2 2 1341 1210 264 53 25 chr12 99175836 99176185 -22081345 + ORR1D2 LTR MaLR 1 417 -2 2 1341 307 250 135 0 chr12 99176892 99176988 -22080542 + MIRc SINE MIR 102 210 -58 2 1341 540 0 0 0 chr12 99177041 99177101 -22080429 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1341 484 291 45 114 chr12 99177162 99177364 -22080166 - MER20 DNA MER1_type -2 217 30 2 1341 230 342 98 12 chr12 99178276 99178439 -22079091 + MIRc SINE MIR 26 202 -66 2 1341 227 371 34 5 chr12 99178826 99178956 -22078574 - MIR SINE MIR -81 187 55 2 1341 244 343 9 19 chr12 99178991 99179098 -22078432 - L1MC4 LINE L1 -150 7892 7787 2 1341 709 220 131 6 chr12 99179178 99179361 -22078169 + B3 SINE B2 1 206 -10 2 1341 1970 192 66 16 chr12 99179761 99180142 -22077388 - MTD LTR MaLR 0 419 20 2 1341 256 197 56 0 chr12 99180162 99180233 -22077297 + L1MC4 LINE L1 6492 6566 -1476 2 1341 400 324 48 7 chr12 99180259 99180405 -22077125 + L1MC4 LINE L1 6729 6880 -1162 2 1341 351 0 0 0 chr12 99180530 99180569 -22076961 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1341 623 248 106 10 chr12 99180950 99181134 -22076396 - B3A SINE B2 -4 191 2 2 1341 641 302 125 68 chr12 99181169 99181521 -22076009 + MTEa LTR MaLR 1 372 -7 2 1341 1367 339 115 31 chr12 99181535 99182807 -22074723 + MTEa-int LTR MaLR 12 1655 -308 2 1341 5776 60 23 9 chr12 99182807 99183595 -22073935 - MusHAL1 LINE L1 -1284 1428 630 2 1341 867 324 57 55 chr12 99183624 99184001 -22073529 + MTEa LTR MaLR 1 370 0 2 1341 1212 68 0 26 chr12 99184053 99184192 -22073338 + B1_Mus1 SINE Alu 2 140 -8 2 1341 258 32 0 0 chr12 99184192 99184223 -22073307 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1341 1212 68 0 26 chr12 99184223 99184234 -22073296 + B1_Mus1 SINE Alu 141 148 0 2 1341 403 352 68 0 chr12 99184392 99184568 -22072962 - MER20 DNA MER1_type -5 214 27 2 1341 267 383 34 17 chr12 99184922 99185039 -22072491 - MIRc SINE MIR -146 122 4 2 1341 351 0 0 0 chr12 99185307 99185346 -22072184 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1341 279 301 169 0 chr12 99186408 99186491 -22071039 + MLT1K LTR MaLR 156 252 -343 2 1341 378 200 12 18 chr12 99187122 99187290 -22070240 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 2 1341 234 62 0 0 chr12 99187313 99187345 -22070185 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 2 1341 677 246 132 16 chr12 99187493 99187683 -22069847 + ID_B1 SINE B4 5 216 -8 2 1341 682 326 64 23 chr12 99187704 99187968 -22069562 + B4A SINE B4 5 279 -13 2 1341 315 0 0 0 chr12 99187998 99188033 -22069497 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1341 672 314 33 5 chr12 99188663 99188874 -22068656 + ID_B1 SINE B4 5 221 -3 2 1341 505 234 24 127 chr12 99188907 99189073 -22068457 + B1F SINE Alu 1 149 0 2 1341 1276 270 55 19 chr12 99189154 99189516 -22068014 - MTE2b LTR MaLR -4 375 1 2 1341 195 42 0 0 chr12 99189811 99189835 -22067695 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1341 450 258 0 0 chr12 99192648 99192745 -22064785 - ID_B1 SINE B4 -7 217 121 3 1341 549 0 0 0 chr12 99193698 99193759 -22063771 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1341 441 0 0 0 chr12 99193759 99193807 -22063723 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1341 268 250 15 0 chr12 99193816 99193884 -22063646 - B3A SINE B2 -127 71 3 3 1341 304 256 25 13 chr12 99193890 99193969 -22063561 - B4 SINE B4 -212 80 1 3 1341 550 293 39 50 chr12 99194456 99194763 -22062767 - ORR1E LTR MaLR -37 333 36 3 1341 242 87 22 0 chr12 99195067 99195113 -22062417 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1341 593 345 63 43 chr12 99195966 99196429 -22061101 - MLT1J LTR MaLR -34 478 7 3 1341 408 352 109 53 chr12 99196747 99197215 -22060315 - MLT1J-int LTR MaLR -440 947 454 3 1341 565 253 66 7 chr12 99197234 99197369 -22060161 + RSINE1 SINE B4 1 141 -24 3 1341 297 51 0 0 chr12 99197403 99197442 -22060088 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 1341 2778 68 29 0 chr12 99198302 99198653 -22058877 - L1Md_F2 LINE L1 -24 5859 5499 3 1341 5773 43 1 0 chr12 99198652 99199332 -22058198 + L1Md_F2 LINE L1 5879 6559 -23 3 1341 183 42 0 0 chr12 99199332 99199356 -22058174 + (TAA)n Simple_repeat Simple_repeat 1 24 0 3 1341 322 227 0 51 chr12 99199365 99199444 -22058086 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 3 1341 446 81 79 26 chr12 99199374 99199450 -22058080 - BC1_Mm scRNA scRNA -72 80 1 3 1341 803 150 0 0 chr12 99199450 99199583 -22057947 + URR1B DNA MER1_type 92 224 -1 3 1341 254 273 41 123 chr12 99200448 99200619 -22056911 - MIR SINE MIR 0 262 106 3 1341 1198 89 0 0 chr12 99201126 99201272 -22056258 + B1_Mus1 SINE Alu 1 146 -2 3 1341 345 352 37 32 chr12 99201386 99201574 -22055956 - MER58A DNA MER1_type -35 189 1 3 1341 694 32 21 0 chr12 99201689 99201782 -22055748 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 3 1341 233 314 87 10 chr12 99202164 99202267 -22055263 + Lx8 LINE L1 7146 7256 -217 3 1341 207 167 0 0 chr12 99202367 99202409 -22055121 + A-rich Low_complexity Low_complexity 1 42 0 3 1341 183 42 0 0 chr12 99202519 99202543 -22054987 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1341 432 0 0 0 chr12 99203041 99203089 -22054441 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1341 2338 105 31 12 chr12 99203092 99203411 -22054119 - ORR1A4 LTR MaLR 0 329 5 3 1341 693 98 0 0 chr12 99203411 99203523 -22054007 + (CA)n Simple_repeat Simple_repeat 1 112 0 3 1341 321 68 0 0 chr12 99204087 99204131 -22053399 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1341 324 325 82 78 chr12 99204200 99204444 -22053086 - ORR1E LTR MaLR -38 321 77 3 1341 360 0 0 0 chr12 99206735 99206775 -22050755 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1341 855 268 123 27 chr12 99207980 99208241 -22049289 - B4A SINE B4 -4 288 3 3 1341 332 308 35 86 chr12 99208242 99208416 -22049114 + MER20 DNA MER1_type 55 219 0 3 1341 239 332 90 37 chr12 99209571 99209815 -22047715 + L1MC LINE L1 5614 5870 -2012 3 1341 180 0 0 0 chr12 99209822 99209842 -22047688 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1341 621 0 0 0 chr12 99210061 99210130 -22047400 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 1341 1571 234 60 3 chr12 99210301 99210649 -22046881 + ORR1D2 LTR MaLR 1 368 -2 3 1341 720 33 0 0 chr12 99211267 99211358 -22046172 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 1341 238 281 0 0 chr12 99211481 99211545 -22045985 + MLT1L LTR MaLR 19 82 -528 3 1341 249 329 0 47 chr12 99211611 99211697 -22045833 + MLT1L LTR MaLR 181 262 -348 3 1341 405 234 41 50 chr12 99213292 99213512 -22044018 + RMER17D LTR ERVK 226 443 -446 3 1341 255 248 0 43 chr12 99213518 99213657 -22043873 + (CATA)n Simple_repeat Simple_repeat 1 133 0 3 1341 244 282 63 24 chr12 99213816 99213943 -22043587 - L1M2 LINE L1 -3653 2490 2359 3 1341 219 287 57 85 chr12 99213963 99214104 -22043426 - ID_B1 SINE B4 -37 187 51 3 1341 287 330 127 22 chr12 99214112 99214379 -22043151 - L2 LINE L2 -640 2779 2485 3 1341 234 0 0 0 chr12 99214397 99214423 -22043107 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1341 229 388 10 10 chr12 99214640 99214739 -22042791 + B4A SINE B4 75 173 -119 3 1341 481 296 21 69 chr12 99214657 99214753 -22042777 + B1_Mur2 SINE Alu 7 95 -54 3 1341 5012 29 5 0 chr12 99214753 99215306 -22042224 + L1Md_F3 LINE L1 6028 6583 -1 3 1341 481 296 21 69 chr12 99215306 99215354 -22042176 + B1_Mur2 SINE Alu 96 144 -5 3 1341 279 0 0 0 chr12 99215788 99215819 -22041711 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1341 292 283 21 11 chr12 99216665 99216758 -22040772 + L2a LINE L2 3330 3423 -3 3 1341 228 285 8 68 chr12 99216792 99216895 -22040635 + MIRb SINE MIR 162 267 -1 3 1341 371 272 40 13 chr12 99217654 99217803 -22039727 + L1MA6 LINE L1 6148 6300 0 3 1341 415 300 232 6 chr12 99217880 99218061 -22039469 - ID_B1 SINE B4 -2 222 1 3 1341 235 346 49 0 chr12 99218588 99218669 -22038861 - MIRc SINE MIR -130 138 54 3 1341 1944 132 27 51 chr12 99218982 99219316 -22038214 + ORR1A3 LTR MaLR 1 326 0 3 1341 6255 61 7 0 chr12 99219898 99220639 -22036891 - L1_Mus2 LINE L1 -1 6565 5820 3 1341 3899 89 6 2 chr12 99220639 99221157 -22036373 + L1_Mus2 LINE L1 5291 5810 -73 3 1342 189 333 47 38 chr12 99221599 99221705 -22035825 - MIRb SINE MIR -132 136 30 3 1342 522 346 5 31 chr12 99221946 99222137 -22035393 + MER63A DNA AcHobo 25 210 0 3 1342 698 62 10 0 chr12 99222225 99222321 -22035209 + (TAGA)n Simple_repeat Simple_repeat 3 99 0 3 1342 23 54 0 0 chr12 99222329 99222366 -22035164 + AT_rich Low_complexity Low_complexity 1 37 0 3 1342 526 332 30 30 chr12 99222375 99222577 -22034953 - B3A SINE B2 -13 203 2 3 1342 927 92 0 0 chr12 99223964 99224095 -22033435 + (CCA)n Simple_repeat Simple_repeat 1 131 0 3 1342 6749 92 34 8 chr12 99224101 99225038 -22032492 - L1_Mus4 LINE L1 -10 6626 5666 3 1342 1655 102 13 15 chr12 99225035 99225293 -22032237 + Lx5 LINE L1 5492 5743 -1307 3 1342 742 275 111 23 chr12 99225524 99225866 -22031664 - MLT1B LTR MaLR -18 372 1 3 1342 286 394 69 20 chr12 99226067 99226417 -22031113 - L2a LINE L2 -8 3418 3052 3 1342 532 152 0 10 chr12 99226598 99226698 -22030832 + RMER20B LTR ERVK 103 201 -426 3 1342 407 266 37 37 chr12 99226981 99227145 -22030385 + RLTR23 LTR ERV1 267 430 0 3 1342 369 0 0 0 chr12 99227251 99227292 -22030238 + (TCTTG)n Simple_repeat Simple_repeat 2 42 0 3 1342 431 325 63 69 chr12 99228228 99228840 -22028690 + MuLV-int LTR ERV1 1308 1828 -5728 3 1342 438 304 37 66 chr12 99229021 99229297 -22028233 + MuLV-int LTR ERV1 1816 2248 -5353 3 1342 2680 152 259 45 chr12 99229299 99230094 -22027436 + RMER17B LTR ERVK 1 958 0 3 1342 1367 343 81 54 chr12 99230482 99232182 -22025348 + MuLV-int LTR ERV1 2651 4396 -3210 3 1342 1007 318 0 0 chr12 99232580 99232904 -22024626 + MuLV-int LTR ERV1 4743 5066 -2490 3 1342 781 239 73 94 chr12 99233580 99233866 -22023664 + RMER20B LTR ERVK 319 598 -29 3 1342 243 164 191 15 chr12 99233871 99233939 -22023591 + RMER20B LTR ERVK 528 607 -20 3 1342 208 321 36 0 chr12 99234011 99234147 -22023383 - MIRb SINE MIR 0 262 118 3 1342 416 312 220 42 chr12 99234507 99234748 -22022782 - B4A SINE B4 -8 284 1 3 1342 1343 188 62 48 chr12 99235186 99235543 -22021987 - ORR1D2 LTR MaLR -1 369 8 3 1342 618 131 0 0 chr12 99236442 99236541 -22020989 + (CTG)n Simple_repeat Simple_repeat 1 99 0 3 1342 1483 275 67 57 chr12 99236554 99237133 -22020397 + Lx8 LINE L1 6527 7111 -362 3 1342 314 340 74 69 chr12 99238858 99239089 -22018441 + MLT1B LTR MaLR 6 237 -153 3 1342 426 208 10 10 chr12 99239089 99239191 -22018339 + Lx9 LINE L1 7539 7640 -4 3 1342 213 297 75 75 chr12 99241265 99241425 -22016105 + MIR SINE MIR 41 200 -68 3 1342 360 0 0 0 chr12 99241431 99241471 -22016059 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1342 498 17 0 0 chr12 99241471 99241529 -22016001 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1342 212 350 50 0 chr12 99241976 99242056 -22015474 - B1F1 SINE Alu -65 84 1 3 1342 1234 110 33 5 chr12 99242674 99242884 -22014646 + Lx LINE L1 6439 6654 0 3 1342 329 310 25 49 chr12 99243338 99243501 -22014029 + RLTR14 LTR ERV1 224 382 0 3 1342 649 318 21 12 chr12 99243504 99243746 -22013784 - MTE2b LTR MaLR -37 342 99 3 1342 243 0 0 0 chr12 99244717 99244744 -22012786 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1342 2282 215 53 36 chr12 99244833 99245416 -22012114 + Lx7 LINE L1 29 621 -7107 3 1342 6284 144 30 49 chr12 99245420 99245799 -22011731 + Lx7 LINE L1 4718 5115 -765 3 1342 1371 78 5 50 chr12 99245799 99246001 -22011529 + B2_Mm2 SINE B2 3 195 0 3 1342 6284 157 46 44 chr12 99246001 99247083 -22010447 + Lx7 LINE L1 5116 6190 -1506 3 1342 1044 173 54 10 chr12 99247090 99247275 -22010255 - ORR1C2 LTR MaLR 0 384 189 3 1342 285 89 0 0 chr12 99247275 99247320 -22010210 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 3 1342 1044 173 54 10 chr12 99247320 99247338 -22010192 - ORR1C2 LTR MaLR -196 188 172 3 1342 519 164 0 0 chr12 99247338 99247466 -22010064 + GA-rich Low_complexity Low_complexity 1 128 0 3 1342 950 137 5 103 chr12 99247466 99247669 -22009861 - ORR1C2 LTR MaLR -199 185 3 3 1342 4995 249 18 9 chr12 99247670 99248811 -22008719 + Lx7 LINE L1 6192 7342 -354 3 1342 426 39 0 0 chr12 99248827 99248879 -22008651 + (TCTCC)n Simple_repeat Simple_repeat 5 56 0 3 1342 190 111 0 43 chr12 99248879 99248917 -22008613 + T-rich Low_complexity Low_complexity 3 38 0 3 1342 28 48 0 0 chr12 99248935 99248977 -22008553 + AT_rich Low_complexity Low_complexity 1 42 0 3 1342 1440 173 77 40 chr12 99248986 99249311 -22008219 + Lx7 LINE L1 7360 7696 0 3 1342 5139 184 39 10 chr12 99250202 99252238 -22005292 - Lx4B LINE L1 -277 6781 5050 3 1342 233 216 11 0 chr12 99252996 99253084 -22004446 + CT-rich Low_complexity Low_complexity 2 90 0 3 1342 591 342 67 66 chr12 99253255 99253938 -22003592 - MER57A-int LTR ERV1 -546 5641 4958 3 1342 486 0 0 0 chr12 99254210 99254264 -22003266 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1342 951 292 44 84 chr12 99254469 99254992 -22002538 - MER57A-int LTR ERV1 -1322 4865 4364 3 1342 349 306 0 46 chr12 99255613 99255764 -22001766 - MER57-int LTR ERV1 -2099 5438 5295 3 1342 2707 111 97 25 chr12 99255764 99256208 -22001322 - Lx LINE L1 -1 6653 6178 3 1342 299 152 0 0 chr12 99256209 99256255 -22001275 + L1_Mur2 LINE L1 5565 5610 -267 4 1342 209 57 29 0 chr12 99256419 99256454 -22001076 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 4 1342 330 26 0 0 chr12 99257177 99257216 -22000314 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1342 180 0 0 0 chr12 99257216 99257235 -22000295 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1342 270 0 0 0 chr12 99257235 99257264 -22000266 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 4 1342 512 264 14 14 chr12 99257285 99257431 -22000099 - RMER15 LTR ERVL -52 523 378 4 1342 1055 219 118 12 chr12 99257432 99257472 -22000058 + Lx6 LINE L1 6843 6909 -551 4 1342 369 0 0 0 chr12 99257472 99257513 -22000017 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1342 1055 219 118 12 chr12 99257513 99257717 -21999813 + Lx6 LINE L1 6910 7112 -348 4 1342 510 125 0 0 chr12 99257992 99258072 -21999458 + (TC)n Simple_repeat Simple_repeat 2 81 0 4 1342 24 32 0 0 chr12 99258327 99258358 -21999172 + AT_rich Low_complexity Low_complexity 1 31 0 4 1342 337 264 76 15 chr12 99258373 99258504 -21999026 + MLT1A LTR MaLR 1 139 -235 4 1342 720 0 0 0 chr12 99258504 99258584 -21998946 + (GAA)n Simple_repeat Simple_repeat 1 80 0 4 1342 419 293 90 32 chr12 99260099 99260254 -21997276 + RSINE1 SINE B4 2 165 0 4 1342 760 251 69 14 chr12 99260414 99260632 -21996898 - MER58D DNA MER1_type -156 230 1 4 1342 1160 254 76 18 chr12 99260690 99261031 -21996499 - MTD LTR MaLR -12 407 47 4 1342 283 312 121 33 chr12 99261119 99261385 -21996145 - MLT1D LTR MaLR -190 315 20 4 1342 984 282 52 7 chr12 99262452 99262759 -21994771 - MTD LTR MaLR -3 416 96 4 1342 2374 294 42 11 chr12 99263350 99264068 -21993462 + Lx9 LINE L1 6423 7162 -482 4 1342 339 25 0 0 chr12 99264074 99264114 -21993416 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 4 1342 746 202 6 0 chr12 99264132 99264305 -21993225 + GA-rich Low_complexity Low_complexity 4 177 0 4 1342 396 295 77 30 chr12 99264307 99264541 -21992989 + Lx9 LINE L1 7214 7458 -186 4 1342 566 178 195 0 chr12 99264914 99265032 -21992498 - URR1A DNA MER1_type -80 146 6 4 1342 332 283 37 28 chr12 99265950 99266059 -21991471 + PB1D9 SINE Alu 1 110 -10 4 1342 273 119 0 0 chr12 99266060 99266102 -21991428 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 4 1342 717 153 0 0 chr12 99266095 99266219 -21991311 + GA-rich Low_complexity Low_complexity 1 124 0 4 1342 332 292 17 17 chr12 99266717 99266832 -21990698 + GA-rich Low_complexity Low_complexity 3 117 0 4 1342 387 378 144 0 chr12 99268144 99268422 -21989108 - MLT1F LTR MaLR -40 508 191 4 1342 225 65 0 0 chr12 99268745 99268776 -21988754 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1342 199 373 25 33 chr12 99269461 99269583 -21987947 + MIRb SINE MIR 58 178 -90 4 1342 424 277 203 16 chr12 99270871 99271117 -21986413 + B4A SINE B4 1 292 0 4 1342 217 239 0 0 chr12 99271160 99271206 -21986324 + (CATA)n Simple_repeat Simple_repeat 4 49 0 4 1342 1305 197 78 22 chr12 99271480 99271802 -21985728 + RLTR15 LTR ERVK 1 340 -19 4 1342 385 34 17 17 chr12 99272289 99272349 -21985181 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 4 1342 1013 102 0 0 chr12 99272349 99272486 -21985044 - B1_Mus1 SINE Alu -10 138 2 4 1342 345 47 0 0 chr12 99272526 99272569 -21984961 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1342 248 292 101 0 chr12 99272680 99272769 -21984761 - MLT2B4 LTR ERVL 0 560 463 4 1342 1132 213 16 24 chr12 99272986 99273104 -21984426 - RLTR21 LTR ERVK -32 1540 1425 4 1342 4882 51 5 0 chr12 99273104 99273692 -21983838 - L1Md_F2 LINE L1 0 6582 5992 4 1342 1132 213 16 24 chr12 99273692 99273828 -21983702 - RLTR21 LTR ERVK -148 1424 1288 4 1342 6413 145 47 10 chr12 99273842 99273899 -21983631 - RLTR21 LTR ERVK -388 1184 1128 4 1342 477 0 0 0 chr12 99273899 99273952 -21983578 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1342 6413 145 47 10 chr12 99273952 99275035 -21982495 - RLTR21 LTR ERVK -445 1127 1 4 1342 599 340 46 18 chr12 99275035 99275141 -21982389 - MLT2B4 LTR ERVL -247 309 194 4 1342 234 0 0 0 chr12 99275141 99275167 -21982363 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1342 599 340 46 18 chr12 99275167 99275342 -21982188 - MLT2B4 LTR ERVL -363 193 21 4 1342 832 273 114 8 chr12 99276073 99276335 -21981195 - MLT1A0 LTR MaLR -4 361 72 4 1342 543 81 0 0 chr12 99276600 99276686 -21980844 + (TC)n Simple_repeat Simple_repeat 1 86 0 4 1342 294 277 0 35 chr12 99277317 99277403 -21980127 - MLT1A1 LTR MaLR 0 408 326 4 1342 457 204 31 0 chr12 99277471 99277569 -21979961 + BC1_Mm scRNA scRNA 2 102 -50 4 1342 1672 205 18 3 chr12 99279318 99279655 -21977875 + Lx7 LINE L1 6688 7029 -667 4 1342 2698 34 3 3 chr12 99279736 99280051 -21977479 + Lx7 LINE L1 5271 5586 -297 4 1342 9011 33 0 0 chr12 99280051 99281047 -21976483 + L1Md_T LINE L1 5587 6582 0 4 1342 2698 270 15 26549 chr12 99281047 99281109 -21976421 + Lx7 LINE L1 5587 5591 -292 4 1342 180 0 0 0 chr12 99281235 99281255 -21976275 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1342 2115 243 185 76 chr12 99281368 99282312 -21975218 - MTC-int LTR MaLR -174 1084 38 4 1342 1140 285 60 37 chr12 99282354 99282736 -21974794 - MTD LTR MaLR -13 406 16 4 1342 267 319 8 58 chr12 99283036 99283156 -21974374 + L2c LINE L2 3260 3373 -14 4 1342 277 250 35 80 chr12 99283986 99284099 -21973431 - LTR33B LTR ERVL -43 460 353 4 1342 469 258 8 31 chr12 99285468 99285596 -21971934 - ID_B1 SINE B4 -9 215 91 4 1342 202 184 0 37 chr12 99286540 99286647 -21970883 + (TCTCTG)n Simple_repeat Simple_repeat 2 104 0 4 1342 559 166 0 23 chr12 99286670 99286843 -21970687 + (TCTCTG)n Simple_repeat Simple_repeat 6 174 0 4 1342 387 0 0 0 chr12 99286838 99286881 -21970649 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1342 653 333 0 0 chr12 99286911 99287085 -21970445 - B4 SINE B4 -109 183 10 4 1342 819 172 33 40 chr12 99287150 99287301 -21970229 - B1_Mur4 SINE Alu 0 150 1 4 1342 324 209 21 21 chr12 99289399 99289492 -21968038 - LTR41 LTR ERVL -3 765 673 4 1342 957 70 0 0 chr12 99289516 99289644 -21967886 - L1Md_A LINE L1 -5649 1075 948 4 1342 5382 33 20 2 chr12 99289644 99290250 -21967280 + L1Md_F3 LINE L1 5967 6583 -1 4 1342 2094 110 0 64 chr12 99290380 99290710 -21966820 - L1Md_F2 LINE L1 -1 6581 6273 4 1342 264 291 69 69 chr12 99290821 99290980 -21966550 - LTR41B LTR ERVL -586 172 14 4 1342 229 286 39 39 chr12 99291089 99291191 -21966339 + HAL1 LINE L1 32 133 -2374 4 1342 213 67 0 118 chr12 99291666 99291734 -21965796 + (TCTCTG)n Simple_repeat Simple_repeat 1 60 0 4 1342 492 237 0 0 chr12 99291737 99291910 -21965620 + (TG)n Simple_repeat Simple_repeat 1 173 0 4 1342 753 185 0 0 chr12 99291934 99292112 -21965418 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1342 763 290 125 7 chr12 99292291 99292586 -21964944 - MLT1B LTR MaLR -60 330 1 4 1342 201 197 40 0 chr12 99292657 99292733 -21964797 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1342 285 29 0 0 chr12 99292965 99292999 -21964531 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 4 1342 1384 178 5 5 chr12 99293160 99293375 -21964155 + B3 SINE B2 2 216 0 4 1342 1004 287 117 27 chr12 99293698 99293809 -21963721 + Lx9 LINE L1 7073 7182 -462 4 1342 770 48 29 0 chr12 99293809 99293914 -21963616 + (CATATA)n Simple_repeat Simple_repeat 2 109 0 4 1342 1004 287 117 27 chr12 99293914 99294324 -21963206 + Lx9 LINE L1 7183 7640 -4 4 1342 1271 235 69 56 chr12 99294354 99294568 -21962962 + Lx9 LINE L1 6577 6791 -853 4 1342 2308 162 47 37 chr12 99294568 99294998 -21962532 - Lx LINE L1 -5 6649 6216 4 1342 1271 235 69 56 chr12 99294998 99295233 -21962297 + Lx9 LINE L1 6792 7032 -612 4 1342 3612 30 5 0 chr12 99295585 99295979 -21961551 - MTA_Mm LTR MaLR 0 396 1 4 1342 22 0 0 0 chr12 99296511 99296533 -21960997 + AT_rich Low_complexity Low_complexity 1 22 0 4 1342 440 100 0 192 chr12 99297844 99297943 -21959587 + URR1B DNA MER1_type 146 225 0 4 1342 22 35 0 0 chr12 99298701 99298730 -21958800 + AT_rich Low_complexity Low_complexity 1 29 0 4 1342 191 61 0 29 chr12 99298848 99298882 -21958648 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1342 1259 244 40 77 chr12 99299178 99299622 -21957908 + L1_Mur3 LINE L1 259 686 -7026 4 1342 1295 48 0 0 chr12 99299640 99299785 -21957745 + B1_Mm SINE Alu 1 145 -2 4 1342 717 12 0 0 chr12 99299785 99299867 -21957663 + (GAA)n Simple_repeat Simple_repeat 2 83 0 4 1342 822 159 0 0 chr12 99299868 99300013 -21957517 + GA-rich Low_complexity Low_complexity 4 148 0 4 1342 1366 188 151 3 chr12 99300013 99300338 -21957192 + L1_Mur3 LINE L1 699 1071 -6641 4 1342 182 366 32 16 chr12 99300399 99300524 -21957006 - L2 LINE L2 -725 2694 2568 4 1342 1338 307 148 17 chr12 99301751 99301944 -21955586 - Lx8 LINE L1 -427 7046 6785 4 1342 402 74 0 0 chr12 99301944 99301998 -21955532 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1342 1338 307 148 17 chr12 99301998 99302390 -21955140 - Lx8 LINE L1 -689 6784 6385 4 1342 606 120 16 8 chr12 99302702 99302828 -21954702 + (TC)n Simple_repeat Simple_repeat 1 127 0 4 1342 501 308 131 48 chr12 99303104 99303356 -21954174 - B4A SINE B4 -19 273 1 4 1342 273 57 0 0 chr12 99303404 99303439 -21954091 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1342 3492 24 31 3 chr12 99304008 99304393 -21953137 + MTA_Mm LTR MaLR 1 396 0 4 1342 344 103 17 0 chr12 99304408 99304466 -21953064 + (TTTTC)n Simple_repeat Simple_repeat 1 59 0 4 1342 9936 79 14 28 chr12 99304470 99306525 -21951005 - Lx3A LINE L1 0 6981 4964 4 1342 307 281 12 12 chr12 99307384 99307467 -21950063 + MER21B LTR ERV1 15 97 -766 4 1342 386 316 241 58 chr12 99307483 99307886 -21949644 + MER21B LTR ERV1 63 539 -324 4 1342 235 370 25 0 chr12 99307995 99308076 -21949454 - MTE2b LTR MaLR -296 83 1 4 1342 270 294 11 21 chr12 99308208 99308302 -21949228 - MLT2D LTR ERVL -217 197 105 4 1342 347 240 101 30 chr12 99308348 99308447 -21949083 - PB1D9 SINE Alu -2 118 13 4 1342 255 303 62 35 chr12 99308444 99308557 -21948973 - MLT2D LTR ERVL -277 120 5 4 1342 327 261 121 0 chr12 99308715 99308872 -21948658 - ERVL-B4-int LTR ERVL -226 5441 5266 4 1342 909 277 17 25 chr12 99308912 99309153 -21948377 + MTE2a LTR MaLR 141 379 0 4 1342 491 303 6 49 chr12 99309248 99309411 -21948119 + ERVL-B4-int LTR ERVL 1564 1719 -3995 4 1342 271 283 37 19 chr12 99309478 99309586 -21947944 + MLT1C LTR MaLR 117 226 -164 4 1342 2372 100 24 59 chr12 99309736 99310075 -21947455 + ORR1A2 LTR MaLR 1 327 0 4 1342 322 273 273 0 chr12 99310239 99310338 -21947192 + MLT1C LTR MaLR 333 458 -9 4 1342 2436 272 90 56 chr12 99310374 99311133 -21946397 + ERVL-B4-int LTR ERVL 1757 2538 -3176 4 1342 654 214 156 0 chr12 99311133 99311306 -21946224 + B3 SINE B2 2 201 -15 4 1342 2436 272 90 56 chr12 99311306 99311503 -21946027 + ERVL-B4-int LTR ERVL 2539 2745 -2969 4 1342 1646 321 91 20 chr12 99311875 99312685 -21944845 + ERVL-B4-int LTR ERVL 3935 4802 -955 4 1342 894 231 97 38 chr12 99312689 99312927 -21944603 + ERVL-B4-int LTR ERVL 4771 5022 -692 4 1342 695 264 74 31 chr12 99313047 99313312 -21944218 - ERVL-B4-int LTR ERVL -4284 1430 1092 4 1342 400 290 126 29 chr12 99313361 99313722 -21943808 - ERVL-B4-int LTR ERVL -4710 1047 688 4 1342 842 218 229 18 chr12 99313781 99314061 -21943469 + ORR1D1 LTR MaLR 6 344 -30 5 1342 462 305 135 37 chr12 99314045 99314290 -21943240 + MLT1A0 LTR MaLR 83 351 -14 5 1342 267 184 92 0 chr12 99314323 99314399 -21943131 - ERVL-B4-int LTR ERVL -5344 370 288 4 1342 200 255 32 11 chr12 99314652 99314722 -21942808 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1342 603 225 235 6 chr12 99314722 99314892 -21942638 - B3 SINE B2 -7 209 1 5 1342 200 255 32 11 chr12 99314892 99314916 -21942614 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 1342 605 288 103 28 chr12 99314970 99315231 -21942299 - MLT2C1 LTR ERVL -178 286 9 5 1342 41 36 0 0 chr12 99315584 99315639 -21941891 + AT_rich Low_complexity Low_complexity 1 55 0 5 1342 279 329 81 20 chr12 99316170 99316319 -21941211 - Zaphod DNA Tip100 0 4031 3874 5 1342 668 281 67 115 chr12 99316527 99316889 -21940641 - ORR1E LTR MaLR -2 377 2 5 1342 1048 254 51 7 chr12 99316889 99317158 -21940372 - ORR1E-int LTR MaLR -52 1528 1247 5 1342 186 227 0 0 chr12 99317813 99317857 -21939673 + GA-rich Low_complexity Low_complexity 3 46 0 5 1342 215 245 0 0 chr12 99317857 99317910 -21939620 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1342 1352 234 60 52 chr12 99318049 99318380 -21939150 + ORR1D2 LTR MaLR 1 341 -29 5 1342 6101 49 1 0 chr12 99318380 99319076 -21938454 - L1_Mus1 LINE L1 0 6567 5871 5 1342 1352 234 60 52 chr12 99319076 99319109 -21938421 + ORR1D2 LTR MaLR 342 368 -2 5 1342 453 363 59 0 chr12 99319454 99319589 -21937941 - RSINE1 SINE B4 -12 153 11 5 1342 1254 14 0 0 chr12 99319926 99320070 -21937460 + (TC)n Simple_repeat Simple_repeat 2 145 0 5 1342 378 0 0 0 chr12 99320070 99320111 -21937419 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1342 272 103 0 0 chr12 99320407 99320446 -21937084 - L1Md_F LINE L1 -6190 329 291 5 1342 2395 29 0 0 chr12 99320440 99320716 -21936814 + L1Md_F2 LINE L1 5311 5586 -297 5 1342 8424 52 7 6 chr12 99320716 99321711 -21935819 + L1Md_F2 LINE L1 5587 6582 0 5 1342 240 326 40 30 chr12 99323172 99323273 -21934257 + MER5B DNA MER1_type 77 178 0 5 1342 234 292 13 40 chr12 99323696 99323771 -21933759 + MIRb SINE MIR 157 229 -39 5 1342 423 0 0 0 chr12 99323849 99323896 -21933634 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1342 189 315 128 21 chr12 99324096 99324190 -21933340 - L3b LINE CR1 -351 131 28 5 1342 273 228 58 25 chr12 99324716 99324813 -21932717 + MIR SINE MIR 79 180 -96 5 1342 193 111 0 53 chr12 99324823 99324861 -21932669 + L2b LINE L2 3330 3365 -10 5 1342 1027 124 0 7 chr12 99325486 99325632 -21931898 + B1_Mus1 SINE Alu 3 147 -1 5 1342 273 208 42 0 chr12 99325936 99326008 -21931522 + (TCTA)n Simple_repeat Simple_repeat 1 75 0 5 1342 242 312 39 0 chr12 99326670 99326747 -21930783 + MLT1H LTR MaLR 85 164 -385 5 1342 863 293 65 45 chr12 99326772 99327108 -21930422 - MER90a LTR ERV1 0 614 272 5 1342 315 0 0 0 chr12 99327299 99327334 -21930196 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1342 584 50 12 0 chr12 99327334 99327413 -21930117 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 1342 795 304 163 4 chr12 99327815 99328221 -21929309 - MLT2B1 LTR ERVL 0 554 31 5 1342 1731 72 0 26 chr12 99328994 99329223 -21928307 - L1_Mus2 LINE L1 0 6566 6344 5 1342 437 176 11 45 chr12 99329312 99329401 -21928129 - B2_Mm2 SINE B2 -108 87 2 5 1342 1788 269 15 15 chr12 99329479 99329899 -21927631 + Lx3C LINE L1 6430 6848 -128 5 1342 2556 234 35 52 chr12 99329899 99330520 -21927010 + RMER19C LTR ERVK 1 611 0 5 1342 1788 269 15 15 chr12 99330520 99330643 -21926887 + Lx3C LINE L1 6849 6973 -3 5 1342 256 294 130 38 chr12 99330656 99330734 -21926796 - MER33 DNA MER1_type -173 151 70 5 1342 473 0 0 17 chr12 99330734 99330792 -21926738 + (GAAAA)n Simple_repeat Simple_repeat 4 60 0 5 1342 256 294 130 38 chr12 99330792 99330844 -21926686 - MER33 DNA MER1_type -255 69 11 5 1342 2082 229 30 158 chr12 99332101 99332433 -21925097 + RMER19C LTR ERVK 1 320 -291 5 1342 2618 69 30 3 chr12 99332433 99332769 -21924761 - IAPLTR4 LTR ERVK 0 345 1 5 1342 2108 229 30 158 chr12 99332769 99333137 -21924393 + RMER19C LTR ERVK 321 611 0 5 1342 200 235 0 0 chr12 99333141 99333192 -21924338 - MIR SINE MIR -60 148 98 5 1342 360 254 206 21 chr12 99333356 99333497 -21924033 + MER5B DNA MER1_type 7 173 -5 5 1342 446 260 10 0 chr12 99333510 99333610 -21923920 + MER5B DNA MER1_type 1 101 -77 5 1342 331 329 45 13 chr12 99333654 99333808 -21923722 - MER5A1 DNA MER1_type -2 164 6 5 1342 748 267 12 0 chr12 99334773 99334934 -21922596 - RSINE1 SINE B4 -1 164 2 5 1342 258 290 91 58 chr12 99334974 99335128 -21922402 + MIR SINE MIR 33 191 -71 5 1342 240 182 0 0 chr12 99336229 99336273 -21921257 - MLT1D LTR MaLR -207 260 217 5 1342 303 235 0 0 chr12 99336335 99336403 -21921127 + MER57-int LTR ERV1 7195 7262 -275 5 1342 574 236 32 74 chr12 99336655 99336842 -21920688 - MLT1D LTR MaLR -447 180 1 5 1342 3407 122 5 14 chr12 99337187 99337776 -21919754 - RLTR19-int LTR ERVK -4125 2012 1429 5 1342 413 320 0 0 chr12 99337821 99337971 -21919559 + (CCA)n Simple_repeat Simple_repeat 1 150 0 5 1342 1804 169 38 124 chr12 99339096 99339326 -21918204 + ORR1C2 LTR MaLR 1 191 -193 5 1342 471 73 0 0 chr12 99339326 99339394 -21918136 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1342 1804 169 38 124 chr12 99339394 99339583 -21917947 + ORR1C2 LTR MaLR 192 384 0 5 1342 828 336 37 40 chr12 99340106 99340404 -21917126 + MLT1A0 LTR MaLR 31 327 -38 5 1342 396 0 0 0 chr12 99342335 99342379 -21915151 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1342 725 306 119 44 chr12 99343053 99343466 -21914064 - MLT1D LTR MaLR -61 444 1 5 1342 292 314 86 86 chr12 99343608 99343946 -21913584 + ORR1E LTR MaLR 20 357 -2 5 1342 300 245 9 78 chr12 99344023 99344138 -21913392 + L1MA6 LINE L1 5894 6000 -300 5 1342 313 328 113 26 chr12 99344466 99344660 -21912870 + LTR78 LTR ERV1 1092 1302 -2 5 1342 603 40 0 0 chr12 99344940 99345014 -21912516 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1342 505 156 31 15 chr12 99345986 99346116 -21911414 + CT-rich Low_complexity Low_complexity 2 133 0 5 1342 205 110 32 0 chr12 99346537 99346574 -21910956 + MIR SINE MIR 116 156 -120 5 1342 677 291 10 16 chr12 99347319 99347511 -21910019 - B3A SINE B2 -7 191 1 5 1342 232 323 10 30 chr12 99347798 99347897 -21909633 - L1MDa LINE L1 -5785 848 752 5 1342 252 53 89 51 chr12 99347978 99348057 -21909473 + (GTTTG)n Simple_repeat Simple_repeat 2 83 0 5 1342 733 192 30 50 chr12 99348158 99348399 -21909131 - ORR1C1 LTR MaLR 0 378 88 5 1342 1112 134 124 0 chr12 99348399 99348600 -21908930 + URR1A DNA MER1_type 1 226 0 5 1342 282 215 139 0 chr12 99348600 99348679 -21908851 - ORR1C1 LTR MaLR -288 90 1 5 1342 337 257 32 29 chr12 99349141 99349292 -21908238 + L1MCb LINE L1 563 687 -5358 5 1342 481 325 160 0 chr12 99350059 99350253 -21907277 + Tigger5 DNA MER2_type 18 242 -2164 5 1342 315 319 0 17 chr12 99350249 99350364 -21907166 + Tigger5 DNA MER2_type 2291 2403 -3 5 1343 632 147 92 4 chr12 99352678 99352944 -21904586 - Lx9 LINE L1 0 7644 7314 5 1343 499 318 189 55 chr12 99353037 99353364 -21904166 + MLT1B LTR MaLR 20 390 -77 5 1343 1500 145 130 7 chr12 99353640 99353917 -21903613 + ORR1B2 LTR MaLR 1 311 -56 5 1343 37832 29 1 6 chr12 99353917 99360098 -21897432 - L1Md_A LINE L1 -2 6580 440 5 1343 456 91 0 0 chr12 99360098 99360164 -21897366 + ORR1B2 LTR MaLR 326 391 -3 5 1343 1152 311 49 16 chr12 99360125 99360182 -21897348 - MTE2b LTR MaLR -1 378 315 5 1343 519 45 0 0 chr12 99360182 99360248 -21897282 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 5 1343 1152 311 49 16 chr12 99360248 99360556 -21896974 - MTE2b LTR MaLR -65 314 1 5 1343 6231 90 14 5 chr12 99360580 99361442 -21896088 - L1_Mus3 LINE L1 -6 6632 5763 5 1343 249 300 62 70 chr12 99362541 99362670 -21894860 + MER94 DNA AcHobo 1 128 -6 5 1343 939 277 29 119 chr12 99362842 99363219 -21894311 - MTE2a LTR MaLR -18 361 19 5 1343 959 121 74 11 chr12 99363296 99363472 -21894058 + B2_Mm1t SINE B2 2 188 -5 5 1343 1319 272 8 83 chr12 99364494 99364879 -21892651 + MTE2b LTR MaLR 6 361 -18 5 1343 267 93 99 7 chr12 99365021 99365162 -21892368 + (TA)n Simple_repeat Simple_repeat 1 154 0 5 1343 277 221 0 14 chr12 99365208 99365277 -21892253 + MER57D LTR ERV1 343 410 -1 5 1343 217 94 58 77 chr12 99365295 99365399 -21892131 + (TA)n Simple_repeat Simple_repeat 1 102 0 5 1343 5998 51 1 3 chr12 99365420 99366166 -21891364 + L1Md_F2 LINE L1 5835 6579 -3 5 1343 261 321 77 24 chr12 99366363 99366532 -21890998 + MER57C2 LTR ERV1 251 428 -6 5 1343 766 280 73 28 chr12 99366543 99366899 -21890631 - L1MC3 LINE L1 -90 7695 7324 5 1343 1526 243 45 34 chr12 99366927 99367460 -21890070 - L1MC3 LINE L1 -536 7249 6711 5 1343 192 189 22 32 chr12 99367750 99367803 -21889727 - MIRb SINE MIR -99 169 120 5 1343 23 0 0 0 chr12 99368343 99368366 -21889164 + AT_rich Low_complexity Low_complexity 1 23 0 5 1343 212 323 0 0 chr12 99369938 99370000 -21887530 + MIRb SINE MIR 27 88 -180 5 1343 293 191 0 22 chr12 99370752 99370843 -21886687 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 5 1343 478 146 0 20 chr12 99371554 99371652 -21885878 + CT-rich Low_complexity Low_complexity 3 98 0 5 1343 261 349 28 0 chr12 99372231 99372337 -21885193 + MLT1H2 LTR MaLR 68 176 -313 5 1343 434 385 49 34 chr12 99373941 99374473 -21883057 - L3 LINE CR1 -751 3738 3199 5 1343 544 212 7 7 chr12 99374641 99374779 -21882751 + GA-rich Low_complexity Low_complexity 3 140 0 5 1343 603 273 94 68 chr12 99375697 99376048 -21881482 - MLT2B2 LTR ERVL -92 475 1 5 1343 450 0 0 0 chr12 99376141 99376191 -21881339 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1343 203 344 21 92 chr12 99376456 99376693 -21880837 - L2b LINE L2 -39 3348 3126 5 1343 4419 148 69 27 chr12 99377925 99378783 -21878747 - RLTR13D6 LTR ERVK -8 894 1 5 1343 24 32 0 0 chr12 99379117 99379148 -21878382 + AT_rich Low_complexity Low_complexity 1 31 0 5 1343 458 350 14 28 chr12 99379183 99379327 -21878203 - RSINE1 SINE B4 -21 144 3 5 1343 1714 178 38 6 chr12 99379487 99379831 -21877699 - Lx9 LINE L1 -302 7342 6988 5 1343 395 326 56 42 chr12 99379978 99380263 -21877267 + B4A SINE B4 1 289 -3 5 1343 313 338 75 63 chr12 99380331 99380758 -21876772 + L1MEd LINE L1 742 1173 -4946 5 1343 266 254 14 27 chr12 99381730 99381803 -21875727 + GA-rich Low_complexity Low_complexity 1 72 0 6 1343 185 111 56 0 chr12 99382344 99382380 -21875150 + (CTTTG)n Simple_repeat Simple_repeat 3 40 0 6 1343 189 94 0 0 chr12 99383451 99383483 -21874047 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1343 765 278 83 53 chr12 99386318 99386546 -21870984 + B4 SINE B4 4 238 -54 6 1343 336 24 0 0 chr12 99388651 99388692 -21868838 + (CAA)n Simple_repeat Simple_repeat 3 43 0 6 1343 274 291 171 35 chr12 99389205 99389433 -21868097 + MLT1E1A LTR MaLR 417 675 -5 6 1343 288 331 32 32 chr12 99389727 99389980 -21867550 + Lx9 LINE L1 6212 6464 -1180 6 1343 194 335 148 38 chr12 99390006 99390189 -21867341 - L2a LINE L2 -43 3383 3181 6 1343 8841 76 20 1 chr12 99390401 99392325 -21865205 - L1_Mus1 LINE L1 0 6654 4607 6 1343 2900 118 135 24 chr12 99392322 99392826 -21864704 + Lx4A LINE L1 6499 7058 0 6 1343 357 214 71 0 chr12 99392845 99392943 -21864587 + MER58B DNA MER1_type 92 196 -145 6 1343 2077 71 14 21 chr12 99393339 99393625 -21863905 - L1Md_F2 LINE L1 -12 6570 6287 6 1343 1929 74 0 0 chr12 99393625 99393867 -21863663 + L1Md_F2 LINE L1 6057 6298 -284 6 1343 453 66 0 0 chr12 99394393 99394454 -21863076 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1343 315 0 0 0 chr12 99394454 99394488 -21863042 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1343 490 269 56 21 chr12 99394501 99394645 -21862885 + B1F SINE Alu 1 149 0 6 1343 237 247 23 23 chr12 99395332 99395419 -21862111 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 6 1343 491 336 92 70 chr12 99395429 99395787 -21861743 - MLT2D LTR ERVL -48 366 1 6 1343 4309 128 55 3 chr12 99395820 99396384 -21861146 + Lx2 LINE L1 6287 6866 -131 6 1343 300 27 0 0 chr12 99396384 99396421 -21861109 + (TGGG)n Simple_repeat Simple_repeat 1 37 0 6 1343 4309 128 55 3 chr12 99396421 99396532 -21860998 + Lx2 LINE L1 6867 6995 -2 6 1343 363 326 30 15 chr12 99400406 99400479 -21857051 + ID_B1 SINE B4 77 152 -72 6 1343 3187 41 18 3 chr12 99400479 99400871 -21856659 + L1Md_F2 LINE L1 6185 6582 0 6 1343 363 326 30 15 chr12 99400871 99400931 -21856599 + ID_B1 SINE B4 153 212 -12 6 1343 448 208 24 0 chr12 99400933 99401058 -21856472 + C-rich Low_complexity Low_complexity 6 133 0 6 1343 360 282 8 100 chr12 99401305 99401435 -21856095 + RCHARR1 DNA MER1_type 37 154 -820 6 1343 453 278 151 69 chr12 99401421 99401726 -21855804 + MLT1A LTR MaLR 42 371 -3 6 1343 706 259 35 48 chr12 99401785 99402016 -21855514 - Lx7 LINE L1 -367 7329 7102 6 1343 1471 165 73 27 chr12 99402045 99402543 -21854987 + RMER6A LTR ERVK 103 756 0 6 1343 1040 81 0 57 chr12 99402748 99402905 -21854625 + B1_Mus1 SINE Alu 1 148 0 6 1343 318 67 0 0 chr12 99403213 99403258 -21854272 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1343 272 200 27 0 chr12 99403564 99403639 -21853891 - Lx9 LINE L1 -3 7641 7565 6 1343 261 0 0 0 chr12 99403655 99403684 -21853846 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1343 237 132 0 0 chr12 99404723 99404761 -21852769 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1343 518 293 32 45 chr12 99404893 99405050 -21852480 + RSINE1 SINE B4 3 157 -8 6 1343 375 23 0 0 chr12 99405171 99405215 -21852315 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1343 712 248 75 93 chr12 99405250 99405501 -21852029 - B4A SINE B4 -16 276 26 6 1343 1982 159 63 6 chr12 99405501 99405848 -21851682 - ORR1B2 LTR MaLR 0 367 1 6 1343 712 248 75 93 chr12 99405848 99405876 -21851654 - B4A SINE B4 -267 25 2 6 1343 263 330 76 88 chr12 99406572 99406834 -21850696 - LTR84b LTR ERVL 0 761 503 6 1343 326 171 0 41 chr12 99407775 99407848 -21849682 - B1_Mm SINE Alu -2 145 76 6 1343 216 0 0 0 chr12 99407919 99407943 -21849587 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1343 973 183 84 0 chr12 99408056 99408258 -21849272 - URR1B DNA MER1_type -5 220 2 6 1343 4279 117 99 6 chr12 99408919 99409609 -21847921 + RMER6A LTR ERVK 3 756 0 6 1343 259 374 58 17 chr12 99409717 99409891 -21847639 - LTR78 LTR ERV1 -779 525 345 6 1343 480 62 0 0 chr12 99410013 99410077 -21847453 + (CTTG)n Simple_repeat Simple_repeat 1 64 0 6 1343 492 314 82 5 chr12 99410077 99410272 -21847258 - ID_B1 SINE B4 -13 211 2 6 1343 1122 235 141 39 chr12 99411426 99411865 -21845665 + MLT1D LTR MaLR 20 503 -2 6 1343 2749 50 9 118 chr12 99411922 99412355 -21845175 + RLTR10 LTR ERVK 1 386 -4 6 1343 17280 21 2 13 chr12 99412371 99414336 -21843194 + RLTR10-int LTR ERVK 41 1984 -3 6 1343 2821 47 9 117 chr12 99414338 99414773 -21842757 + RLTR10 LTR ERVK 1 388 -2 6 1343 259 180 0 0 chr12 99414775 99414825 -21842705 - ID4_ SINE ID -33 50 1 6 1343 401 331 20 27 chr12 99415159 99415296 -21842234 - MLT1A0 LTR MaLR -8 357 222 6 1343 986 124 108 130 chr12 99415296 99415464 -21842066 + URR1A DNA MER1_type 1 166 -60 6 1343 3184 58 5 2 chr12 99415464 99415859 -21841671 - MTA_Mm LTR MaLR 0 396 1 6 1343 986 124 108 130 chr12 99415859 99415921 -21841609 + URR1A DNA MER1_type 167 226 0 6 1343 776 269 36 5 chr12 99416071 99416265 -21841265 - ID_B1 SINE B4 -21 203 4 6 1343 306 0 0 0 chr12 99417336 99417370 -21840160 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1343 993 207 49 0 chr12 99418697 99418900 -21838630 - B3 SINE B2 0 216 4 6 1343 391 283 23 70 chr12 99419921 99420092 -21837438 + RSINE1 SINE B4 3 165 0 6 1343 354 194 111 10 chr12 99420935 99421014 -21836516 + Lx9 LINE L1 7388 7477 -167 6 1343 192 77 0 0 chr12 99421014 99421040 -21836490 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1343 354 194 111 10 chr12 99421040 99421059 -21836471 + Lx9 LINE L1 7478 7496 -148 6 1343 681 49 36 73 chr12 99421051 99421161 -21836369 - Lx4A LINE L1 -1098 5960 5855 6 1343 247 200 200 0 chr12 99421257 99421342 -21836188 + Lx9 LINE L1 7533 7634 -10 6 1343 6856 134 67 9 chr12 99421691 99422824 -21834706 + Lx4A LINE L1 5857 7055 -3 6 1343 235 330 75 75 chr12 99423034 99423260 -21834270 - MIRb SINE MIR 0 268 43 6 1343 219 69 0 0 chr12 99423420 99423449 -21834081 + (CATA)n Simple_repeat Simple_repeat 2 30 0 6 1343 415 299 29 7 chr12 99423925 99424063 -21833467 - B1F2 SINE Alu -1 148 8 6 1343 210 245 0 0 chr12 99424581 99424634 -21832896 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 6 1343 204 40 0 0 chr12 99424691 99424716 -21832814 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1343 300 154 0 0 chr12 99426108 99426160 -21831370 + CT-rich Low_complexity Low_complexity 4 55 0 6 1343 27 0 0 0 chr12 99426275 99426302 -21831228 + AT_rich Low_complexity Low_complexity 1 27 0 6 1343 478 335 72 44 chr12 99426373 99426597 -21830933 + L2 LINE L2 2313 2543 -876 6 1343 5354 42 0 11 chr12 99426597 99427248 -21830282 - L1Md_F2 LINE L1 0 6582 5939 6 1343 478 335 72 44 chr12 99427248 99427454 -21830076 + L2 LINE L2 2544 2755 -664 6 1343 400 277 152 55 chr12 99427778 99428015 -21829515 + MER31B LTR ERV1 54 313 -153 6 1343 311 272 21 42 chr12 99428141 99428237 -21829293 + MER58B DNA MER1_type 220 313 -28 6 1343 180 77 0 0 chr12 99428270 99428296 -21829234 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1343 296 119 17 0 chr12 99428730 99428789 -21828741 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 1343 430 81 72 0 chr12 99429382 99429493 -21828037 + (TA)n Simple_repeat Simple_repeat 1 119 0 6 1343 513 303 118 4 chr12 99430189 99430461 -21827069 + MLT1A LTR MaLR 59 361 -13 6 1343 603 265 88 0 chr12 99430857 99431027 -21826503 + B4 SINE B4 82 266 -26 6 1343 396 59 0 0 chr12 99431037 99431088 -21826442 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1343 235 342 69 25 chr12 99431316 99431520 -21826010 + L3 LINE CR1 4150 4362 -127 6 1343 1333 168 59 121 chr12 99432515 99433031 -21824499 + MT2B LTR ERVL 4 590 -11 6 1343 270 325 0 11 chr12 99433276 99433363 -21824167 + B4 SINE B4 206 291 -1 6 1343 215 205 0 0 chr12 99433368 99433407 -21824123 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1343 258 292 115 0 chr12 99433527 99433623 -21823907 + MIRb SINE MIR 87 193 -75 6 1343 329 239 93 42 chr12 99433724 99433842 -21823688 - Lx8 LINE L1 -450 7023 6900 6 1343 221 185 0 97 chr12 99433948 99434020 -21823510 + GA-rich Low_complexity Low_complexity 5 69 0 6 1343 207 0 0 0 chr12 99434756 99434779 -21822751 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1343 419 323 18 31 chr12 99435022 99435185 -21822345 + MER5B DNA MER1_type 2 162 -16 6 1343 3192 53 15 12 chr12 99435848 99436247 -21821283 + MTB LTR MaLR 1 400 0 6 1343 543 232 28 42 chr12 99436701 99436845 -21820685 + Lx4B LINE L1 6900 7041 -17 6 1343 1127 234 57 21 chr12 99437031 99437310 -21820220 + B4A SINE B4 2 290 -2 6 1343 1357 176 84 132 chr12 99437590 99437983 -21819547 + ORR1D1 LTR MaLR 1 374 0 6 1343 549 271 16 73 chr12 99438331 99438522 -21819008 - B3A SINE B2 -18 180 1 6 1343 1070 231 111 29 chr12 99438698 99439148 -21818382 + RMER5 LTR ERV1 33 519 -15 6 1343 285 202 180 11 chr12 99439407 99439500 -21818030 - PB1D10 SINE Alu -11 106 3 6 1343 180 0 0 0 chr12 99439592 99439612 -21817918 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1343 286 340 93 39 chr12 99439709 99440321 -21817209 + L1MD LINE L1 3599 4243 -1903 6 1343 604 314 104 33 chr12 99440343 99440938 -21816592 + L1ME2 LINE L1 5514 6154 -10 6 1343 249 254 0 0 chr12 99441630 99441685 -21815845 + G-rich Low_complexity Low_complexity 2 56 0 6 1343 1233 48 0 0 chr12 99442523 99442670 -21814860 + B1_Mus2 SINE Alu 1 147 0 6 1343 215 271 118 50 chr12 99443358 99443499 -21814031 - MIR SINE MIR -59 149 6 6 1343 573 115 0 0 chr12 99443580 99443676 -21813854 + (CA)n Simple_repeat Simple_repeat 2 97 0 6 1343 208 261 19 0 chr12 99444244 99444314 -21813216 - MIR SINE MIR -157 119 48 6 1343 1167 321 23 25 chr12 99444331 99444728 -21812802 + Lx8 LINE L1 6681 7077 -396 6 1343 309 51 0 0 chr12 99444728 99444767 -21812763 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1343 1167 321 23 25 chr12 99444767 99444839 -21812691 + Lx8 LINE L1 7078 7149 -324 6 1343 180 0 0 0 chr12 99445147 99445167 -21812363 + (CTG)n Simple_repeat Simple_repeat 1 20 0 7 1343 713 241 62 29 chr12 99447604 99447813 -21809717 + B3 SINE B2 1 216 0 7 1343 375 258 57 0 chr12 99447886 99448010 -21809520 - MER5A DNA MER1_type -52 137 7 7 1343 4605 104 34 10 chr12 99449119 99449830 -21807700 + Lx3C LINE L1 6247 6974 -2 7 1343 3173 63 35 2 chr12 99450412 99450840 -21806690 - L1_Mus3 LINE L1 -1 6637 6196 7 1343 207 0 0 0 chr12 99451519 99451542 -21805988 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1343 1224 155 92 0 chr12 99452238 99452445 -21805085 + URR1A DNA MER1_type 1 226 0 7 1343 3384 33 5 0 chr12 99455245 99455639 -21801891 + MTA_Mm LTR MaLR 1 396 0 7 1343 7155 40 20 1 chr12 99455639 99456584 -21800946 + MTA_Mm-int LTR MaLR 1 963 -135 7 1343 959 47 0 51 chr12 99457282 99457365 -21800165 + MTA_Mm-int LTR MaLR 949 1031 -67 7 1343 987 98 60 18 chr12 99457365 99457532 -21799998 + L1Md_F2 LINE L1 6409 6582 0 7 1343 959 47 0 51 chr12 99457532 99457606 -21799924 + MTA_Mm-int LTR MaLR 1032 1098 0 7 1343 3323 24 34 3 chr12 99457606 99457990 -21799540 + MTA_Mm LTR MaLR 1 396 0 7 1343 1138 119 10 29 chr12 99458537 99458745 -21798785 + Lx2B LINE L1 6797 7000 0 7 1343 194 105 26 0 chr12 99459165 99459203 -21798327 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1343 331 321 39 107 chr12 99459403 99459461 -21798069 + ID SINE ID 17 54 -170 7 1343 7273 5 0 0 chr12 99459461 99460253 -21797277 - L1Md_A LINE L1 0 6582 5791 7 1343 331 321 39 107 chr12 99460253 99460400 -21797130 + ID_B1 SINE B4 55 208 -16 7 1343 183 114 0 0 chr12 99460402 99460437 -21797093 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1343 497 292 30 119 chr12 99460560 99460762 -21796768 - B3A SINE B2 -10 185 2 7 1343 415 179 117 43 chr12 99461086 99461249 -21796281 + L1M4b LINE L1 2714 2888 -4446 7 1343 277 204 156 22 chr12 99461890 99461980 -21795550 + Lx2B LINE L1 6826 6927 -73 7 1343 468 0 0 0 chr12 99462004 99462056 -21795474 + (TAA)n Simple_repeat Simple_repeat 2 53 0 7 1343 550 256 93 30 chr12 99462272 99462639 -21794891 + L1M4b LINE L1 3641 4030 -2976 7 1343 180 0 0 0 chr12 99463251 99463271 -21794259 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1343 378 310 21 0 chr12 99463287 99463432 -21794098 + L1M4b LINE L1 5918 6065 -941 7 1343 1831 154 25 34 chr12 99463537 99464062 -21793468 - RLTR20D LTR ERVK -2 566 1 7 1343 2626 164 77 34 chr12 99464102 99464659 -21792871 - MYSERV16_I-int LTR ERVK -21 2305 1725 7 1343 1781 147 41 14 chr12 99464814 99465159 -21792371 + RLTR15 LTR ERVK 1 354 -5 7 1343 21 0 0 0 chr12 99465820 99465841 -21791689 + AT_rich Low_complexity Low_complexity 1 21 0 7 1343 183 239 0 0 chr12 99466304 99466350 -21791180 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1343 14415 76 10 2 chr12 99466702 99469400 -21788130 - L1_Mus3 LINE L1 -4 6634 3914 7 1343 612 116 0 0 chr12 99469779 99469874 -21787656 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 7 1343 537 16 0 0 chr12 99470068 99470130 -21787400 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1343 194 250 19 19 chr12 99470203 99470256 -21787274 + MIR SINE MIR 18 70 -192 7 1343 1105 42 0 0 chr12 99471278 99471421 -21786109 - B1_Mus1 SINE Alu 0 148 6 7 1343 1401 70 37 5 chr12 99471433 99471620 -21785910 - B2_Mm2 SINE B2 0 195 3 7 1343 200 111 43 22 chr12 99471857 99471903 -21785627 + T-rich Low_complexity Low_complexity 3 49 0 7 1343 249 33 0 0 chr12 99472704 99472734 -21784796 + (GAA)n Simple_repeat Simple_repeat 1 30 0 7 1343 420 276 31 8 chr12 99474108 99474236 -21783294 - B1_Mur1 SINE Alu -1 148 18 7 1343 419 289 91 10 chr12 99474496 99474695 -21782835 - MER33 DNA MER1_type -109 215 1 7 1343 629 250 96 6 chr12 99475104 99475281 -21782249 + MTC LTR MaLR 1 193 -228 7 1343 2808 42 0 3 chr12 99475317 99475654 -21781876 - L1_Mus1 LINE L1 0 6567 6232 7 1343 6610 54 3 2 chr12 99475654 99476848 -21780682 + L1_Mus1 LINE L1 5028 6222 -345 7 1343 748 126 156 116 chr12 99476848 99477032 -21780498 + MTC LTR MaLR 183 377 -44 7 1343 1377 105 16 0 chr12 99477032 99477222 -21780308 - B2_Mm2 SINE B2 0 195 3 7 1343 748 126 156 116 chr12 99477222 99477262 -21780268 + MTC LTR MaLR 378 416 -5 7 1343 513 319 14 40 chr12 99478146 99478368 -21779162 - MER20 DNA MER1_type 0 219 4 7 1343 390 253 77 62 chr12 99478561 99478755 -21778775 + B3A SINE B2 2 198 0 7 1343 22 56 0 0 chr12 99478843 99478879 -21778651 + AT_rich Low_complexity Low_complexity 1 36 0 7 1343 338 241 180 107 chr12 99479511 99479877 -21777653 + L1MC5 LINE L1 7292 7684 -277 7 1343 282 254 0 42 chr12 99480105 99480217 -21777313 + ID4 SINE ID 6 107 -45 7 1343 279 212 71 0 chr12 99481802 99481887 -21775643 + (CCCA)n Simple_repeat Simple_repeat 3 93 0 7 1343 1018 258 143 51 chr12 99482614 99483068 -21774462 + RMER5 LTR ERV1 1 496 -38 7 167 650 301 129 18 chr12 99483476 99483845 -21773685 + MTD LTR MaLR 1 421 0 7 1344 376 213 126 16 chr12 99484019 99484142 -21773388 - B1_Mus2 SINE Alu -7 143 6 7 1344 792 215 56 10 chr12 99484717 99484914 -21772616 + B3 SINE B2 1 206 -10 7 1344 4207 73 31 2 chr12 99485513 99486065 -21771465 + L1Md_F2 LINE L1 6014 6581 -1 7 1344 2224 35 0 0 chr12 99486288 99486544 -21770986 + L1Md_F2 LINE L1 5331 5586 -297 7 1344 8821 17 2 4 chr12 99486544 99487540 -21769990 + L1Md_F2 LINE L1 5587 6580 -2 7 1344 1769 214 69 9 chr12 99488422 99488869 -21768661 - Lx9 LINE L1 -145 7499 7026 7 1344 243 0 0 0 chr12 99488873 99488900 -21768630 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1344 538 223 8 62 chr12 99488966 99489095 -21768435 - B1_Mur4 SINE Alu -23 127 6 7 1344 324 180 0 212 chr12 99489010 99489123 -21768407 - MT2B LTR ERVL -361 240 152 7 1344 23 0 0 0 chr12 99489220 99489243 -21768287 + AT_rich Low_complexity Low_complexity 1 23 0 7 1344 1149 182 19 5 chr12 99489831 99490041 -21767489 + B3 SINE B2 1 213 -3 7 1344 2309 157 10 7 chr12 99491594 99491944 -21765586 + MTC LTR MaLR 3 352 -69 7 1344 180 0 0 0 chr12 99491944 99491964 -21765566 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1344 2309 157 10 7 chr12 99491964 99492023 -21765507 + MTC LTR MaLR 353 412 -9 7 1344 426 265 81 0 chr12 99492046 99492182 -21765348 + B1F SINE Alu 1 147 -2 7 1344 394 191 16 0 chr12 99492551 99492677 -21764853 + (CA)n Simple_repeat Simple_repeat 2 129 0 7 1344 675 290 39 15 chr12 99494009 99494212 -21763318 + B3 SINE B2 9 216 0 7 1344 216 0 0 0 chr12 99496265 99496289 -21761241 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1344 21 0 0 0 chr12 99496318 99496339 -21761191 + AT_rich Low_complexity Low_complexity 1 21 0 7 1344 271 210 0 0 chr12 99498324 99498386 -21759144 + MER34 LTR ERV1 235 296 -246 7 1344 447 289 50 45 chr12 99498386 99498585 -21758945 - RMER30 DNA MER1_type -1 201 2 7 1344 298 239 0 0 chr12 99498599 99498666 -21758864 - B1_Mur3 SINE Alu -43 106 40 7 1344 275 225 18 0 chr12 99498666 99498777 -21758753 + (CCTG)n Simple_repeat Simple_repeat 2 114 0 7 1344 237 269 154 46 chr12 99498781 99498849 -21758681 + MER34 LTR ERV1 302 375 -167 7 1344 198 0 0 0 chr12 99498849 99498871 -21758659 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 7 1344 237 269 154 46 chr12 99498871 99498977 -21758553 + MER34 LTR ERV1 376 495 -47 7 1344 453 36 0 0 chr12 99499106 99499161 -21758369 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1344 1265 226 112 24 chr12 99499349 99499689 -21757841 - MTEa LTR MaLR -9 370 1 7 1344 200 167 0 0 chr12 99499766 99499796 -21757734 + polypyrimidine Low_complexity Low_complexity 1 30 0 7 1344 306 0 0 0 chr12 99499796 99499830 -21757700 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1344 225 338 0 51 chr12 99500019 99500097 -21757433 - B4 SINE B4 -123 169 96 1 1344 277 234 0 15 chr12 99500140 99500205 -21757325 - B4A SINE B4 -45 247 184 2 1344 391 254 45 131 chr12 99501124 99501323 -21756207 + B3A SINE B2 1 182 -16 3 1344 236 278 30 41 chr12 99501324 99501493 -21756037 + (CATATA)n Simple_repeat Simple_repeat 6 172 0 4 1344 935 211 61 6 chr12 99501526 99501707 -21755823 + B3 SINE B2 23 213 -3 5 1344 243 370 12 5 chr12 99501854 99501983 -21755547 + MIR SINE MIR 18 146 -122 6 1344 340 302 171 0 chr12 99502291 99502420 -21755110 - RSINE1 SINE B4 -12 153 3 7 1344 649 263 126 16 chr12 99503180 99503497 -21754033 - ORR1E LTR MaLR -7 352 1 8 1344 235 288 208 31 chr12 99503531 99503757 -21753773 - Charlie5 DNA MER1_type 0 2624 2359 9 1344 515 287 128 26 chr12 99504769 99505034 -21752496 - B4 SINE B4 0 292 1 1 1344 339 113 0 0 chr12 99505194 99505247 -21752283 + (CTTG)n Simple_repeat Simple_repeat 2 54 0 1 1344 721 179 8 0 chr12 99505257 99505374 -21752156 - B1_Mus2 SINE Alu -28 119 2 1 1344 403 241 115 76 chr12 99505374 99505430 -21752100 - MT2B LTR ERVL -445 156 95 1 1344 511 263 43 36 chr12 99505374 99505385 -21752145 - B4 SINE B4 -76 159 78 1 1344 627 285 81 36 chr12 99506324 99506546 -21750984 + B4A SINE B4 1 232 -60 1 1344 211 257 0 54 chr12 99506601 99506675 -21750855 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 1 1344 212 282 155 0 chr12 99507892 99507963 -21749567 - MIRb SINE MIR -70 198 117 1 1344 394 349 85 35 chr12 99508525 99508959 -21748571 - L1MEg LINE L1 -4707 1518 1063 1 1344 310 351 9 17 chr12 99509092 99509208 -21748322 - PB1D7 SINE Alu -5 115 1 1 1344 3362 176 112 12 chr12 99509363 99510460 -21747070 - Lx2B LINE L1 -11 6989 5783 2 1344 285 346 9 27 chr12 99510452 99510562 -21746968 - L1MEg LINE L1 -5431 688 581 1 1344 368 320 20 20 chr12 99510808 99510958 -21746572 - L1ME3A LINE L1 -58 6115 5966 2 1344 387 0 0 0 chr12 99511284 99511327 -21746203 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1344 246 276 0 0 chr12 99511327 99511385 -21746145 - L1ME3A LINE L1 -723 5450 5393 2 1344 435 176 0 0 chr12 99511479 99511570 -21745960 + CT-rich Low_complexity Low_complexity 2 92 0 2 1344 5485 55 6 14 chr12 99515129 99515792 -21741738 - L1_Mus1 LINE L1 -1 6566 5909 2 1344 246 236 22 33 chr12 99518369 99518461 -21739069 - Lx6 LINE L1 -4 7456 7366 2 1344 754 199 137 38 chr12 99519099 99519282 -21738248 + B3 SINE B2 10 210 -6 2 1344 355 347 94 40 chr12 99519697 99519973 -21737557 + B4A SINE B4 1 291 -1 2 1344 249 33 0 0 chr12 99520001 99520031 -21737499 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1344 306 0 0 0 chr12 99520445 99520479 -21737051 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1344 471 35 0 0 chr12 99520479 99520535 -21736995 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1344 634 155 201 55 chr12 99521173 99521337 -21736193 - B3 SINE B2 -28 188 1 3 1344 369 0 0 0 chr12 99521410 99521451 -21736079 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1344 225 389 44 37 chr12 99521474 99521610 -21735920 - MamGypLTR1c LTR Gypsy -92 711 575 3 1344 2020 63 4 0 chr12 99522062 99522317 -21735213 - L1Md_F2 LINE L1 -480 6102 5847 3 1344 4192 45 12 0 chr12 99522317 99522803 -21734727 + L1Md_F2 LINE L1 6090 6581 -1 3 1344 331 291 89 18 chr12 99523097 99523209 -21734321 + ORR1E LTR MaLR 1 120 -239 3 1344 3950 133 51 9 chr12 99523502 99524148 -21733382 + RLTR33 LTR ERVK 6 678 0 3 1344 799 274 143 27 chr12 99524253 99524512 -21733018 + B4A SINE B4 2 290 -2 3 1344 1707 257 37 24 chr12 99524840 99525303 -21732227 - Lx8 LINE L1 -862 6611 6143 3 1344 1005 132 28 11 chr12 99525357 99525533 -21731997 + URR1A DNA MER1_type 45 223 -3 3 1344 1680 36 5 0 chr12 99525723 99525919 -21731611 - L1Md_F2 LINE L1 -12 6570 6374 4 1344 974 211 16 21 chr12 99525920 99526162 -21731368 - Lx7 LINE L1 -1769 5927 5687 4 1344 900 206 27 104 chr12 99526160 99526458 -21731072 - Lx7 LINE L1 -437 5443 5169 4 1344 873 76 0 0 chr12 99526475 99526593 -21730937 + (TCTCCC)n Simple_repeat Simple_repeat 1 118 0 4 1344 378 0 0 0 chr12 99526602 99526644 -21730886 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1344 347 0 23 0 chr12 99526644 99526686 -21730844 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1344 186 359 131 34 chr12 99528857 99529125 -21728405 - L2 LINE L2 -403 3016 2723 4 1344 2251 98 69 0 chr12 99529870 99530176 -21727354 + ORR1A2 LTR MaLR 1 327 0 4 1344 1774 164 13 22 chr12 99533559 99533877 -21723653 - MTC LTR MaLR 0 421 107 4 1344 189 0 0 0 chr12 99534606 99534627 -21722903 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 1344 540 108 85 11 chr12 99534633 99534727 -21722803 - MTC LTR MaLR -320 101 1 4 1344 210 302 182 0 chr12 99535060 99535186 -21722344 + MER5B DNA MER1_type 21 169 -9 4 1344 408 325 37 25 chr12 99535782 99535943 -21721587 - B4A SINE B4 -129 163 1 5 1344 243 255 0 0 chr12 99537214 99537265 -21720265 - ID4 SINE ID -27 56 6 5 1344 316 250 68 95 chr12 99537265 99537455 -21720075 - L1M5 LINE L1 -1348 4798 4614 5 1344 1200 250 46 107 chr12 99537509 99537903 -21719627 - ORR1D2 LTR MaLR 0 370 1 5 1344 751 132 0 37 chr12 99538511 99538645 -21718885 - L1Md_F2 LINE L1 -14 6568 6440 5 1344 1118 218 48 78 chr12 99538700 99539138 -21718392 + ORR1D2 LTR MaLR 18 405 -14 5 1344 289 336 70 0 chr12 99539400 99539528 -21718002 + L2 LINE L2 1897 2033 -1386 5 1344 400 373 0 53 chr12 99540565 99540735 -21716795 + MLT1J-int LTR MaLR 190 350 -1037 5 1344 22 0 0 0 chr12 99540747 99540769 -21716761 + AT_rich Low_complexity Low_complexity 1 22 0 5 1344 709 177 0 37 chr12 99541205 99541340 -21716190 + URR1B DNA MER1_type 1 130 -95 5 1344 6856 162 19 198 chr12 99541340 99543256 -21714274 + RLTR21 LTR ERVK 1 1572 0 6 1344 527 135 11 0 chr12 99543265 99543354 -21714176 + URR1B DNA MER1_type 125 214 -11 5 1344 1221 239 124 19 chr12 99543390 99543769 -21713761 - MTD LTR MaLR 0 419 1 6 1344 6018 78 15 6 chr12 99543934 99544804 -21712726 - RLTR13A3 LTR ERVK 0 978 1 6 1344 1408 334 130 42 chr12 99545479 99546899 -21710631 + L2 LINE L2 1168 2712 -707 6 1344 2523 89 3 58 chr12 99547478 99547824 -21709706 - ORR1A2 LTR MaLR 0 327 1 6 1344 253 271 14 0 chr12 99549062 99549132 -21708398 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1344 768 288 30 54 chr12 99549135 99549432 -21708098 - B4A SINE B4 -2 290 1 6 1344 206 128 26 0 chr12 99549540 99549579 -21707951 + GA-rich Low_complexity Low_complexity 2 41 0 6 1344 1170 94 109 5 chr12 99550676 99550722 -21706808 - Lx4B LINE L1 -1108 5950 5905 6 1344 210 26 24 49 chr12 99550722 99550763 -21706767 + (TAA)n Simple_repeat Simple_repeat 1 40 0 6 1344 1170 94 109 5 chr12 99550763 99550909 -21706621 - Lx4B LINE L1 -1154 5904 5738 6 1344 3807 189 74 10 chr12 99550908 99551797 -21705733 + Lx4B LINE L1 6036 6981 -19 7 1344 1919 243 87 44 chr12 99551806 99552885 -21704645 - Lx9 LINE L1 -1060 6584 5430 7 1344 4234 184 128 16 chr12 99552888 99553832 -21703698 + Lx9 LINE L1 6591 7640 -4 7 1344 453 383 85 43 chr12 99554424 99554705 -21702825 - L2b LINE L2 -20 3355 3063 7 1344 252 260 0 0 chr12 99554707 99554757 -21702773 + MLT1A0 LTR MaLR 89 138 -227 7 1344 501 161 0 0 chr12 99554856 99554986 -21702544 + CT-rich Low_complexity Low_complexity 2 131 0 7 1344 267 182 0 0 chr12 99554987 99555042 -21702488 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 7 1344 741 65 0 0 chr12 99555043 99555151 -21702379 + (TC)n Simple_repeat Simple_repeat 1 108 0 7 1344 3071 29 0 0 chr12 99556458 99556804 -21700726 - ORR1A0 LTR MaLR 0 346 1 7 1344 5164 105 12 59 chr12 99556963 99557806 -21699724 - RLTR13B4 LTR ERVK 0 803 1 7 1344 4802 36 0 2 chr12 99558781 99559345 -21698185 + L1Md_F3 LINE L1 6022 6584 0 7 1344 213 355 32 8 chr12 99559494 99559619 -21697911 - MIR SINE MIR -74 188 61 8 1344 5298 15 2 0 chr12 99561924 99562515 -21695015 - L1Md_A LINE L1 0 6582 5991 8 1344 462 295 45 6 chr12 99562846 99563003 -21694527 + ORR1E LTR MaLR 1 163 -196 8 1344 1041 296 109 106 chr12 99563214 99564151 -21693379 + Lx8 LINE L1 5672 6611 -862 8 1344 432 281 77 64 chr12 99564164 99564450 -21693080 + L1MDa LINE L1 1087 1391 -5149 8 1344 2233 79 9 6 chr12 99564450 99564781 -21692749 + IAPLTR1a_Mm LTR ERVK 1 332 -5 8 1344 632 262 97 20 chr12 99564803 99565105 -21692425 + L1MDa LINE L1 1443 1795 -4838 8 1344 2330 194 107 6 chr12 99565113 99565610 -21691920 + Lx5 LINE L1 6504 7050 0 8 1344 266 322 26 0 chr12 99565676 99565791 -21691739 - MLT1D LTR MaLR -348 157 40 8 1344 1816 66 29 4 chr12 99566112 99566357 -21691173 - L1Md_F2 LINE L1 0 6582 6332 8 1344 1161 287 59 83 chr12 99567563 99568438 -21689092 + L1MCa LINE L1 1215 2068 -4440 8 1344 1070 300 92 14 chr12 99568435 99569097 -21688433 + L1MCa LINE L1 3614 4344 -1977 8 1344 2416 214 70 29 chr12 99569159 99569747 -21687783 - RLTR18 LTR ERVK -4 612 1 9 1344 383 56 19 0 chr12 99569761 99569815 -21687715 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1344 803 259 0 0 chr12 99569816 99569982 -21687548 - B3A SINE B2 -31 167 2 9 1344 292 290 55 18 chr12 99569982 99570091 -21687439 + L1MCa LINE L1 4363 4475 -1846 8 1344 24 67 0 0 chr12 99570155 99570200 -21687330 + AT_rich Low_complexity Low_complexity 1 45 0 9 1344 489 250 39 25 chr12 99570327 99570471 -21687059 + B3A SINE B2 63 188 -10 9 1344 693 284 115 23 chr12 99570473 99570952 -21686578 + L1MCa LINE L1 4616 5138 -1183 8 1344 885 224 8 19 chr12 99571201 99571418 -21686112 + ORR1E LTR MaLR 10 248 -131 9 1344 285 51 0 0 chr12 99571459 99571498 -21686032 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1344 370 241 23 0 chr12 99571512 99571599 -21685931 + L1MCa LINE L1 5268 5356 -965 8 1344 416 321 17 40 chr12 99571689 99571864 -21685666 + B4A SINE B4 35 205 -87 9 1344 459 0 0 0 chr12 99571864 99571915 -21685615 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1344 279 0 0 0 chr12 99571915 99571945 -21685585 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1344 1035 282 78 11 chr12 99572033 99572445 -21685085 + L1MCa LINE L1 5495 5928 -591 8 1344 560 296 94 0 chr12 99574903 99575106 -21682424 + B4A SINE B4 39 260 -32 1 1344 351 60 0 0 chr12 99575113 99575163 -21682367 + (TCTCTG)n Simple_repeat Simple_repeat 4 53 0 1 1344 360 0 0 0 chr12 99575163 99575202 -21682328 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1344 902 169 0 26 chr12 99575460 99575612 -21681918 - B1_Mur4 SINE Alu 0 150 3 1 1344 219 324 96 23 chr12 99575913 99576131 -21681399 - L3 LINE CR1 -99 4390 4157 1 1344 495 0 0 0 chr12 99576192 99576247 -21681283 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1344 181 341 61 23 chr12 99576297 99576429 -21681101 + L2 LINE L2 2710 2846 -573 1 1344 390 187 0 0 chr12 99577479 99577570 -21679960 + (ATG)n Simple_repeat Simple_repeat 2 92 0 1 1344 372 344 89 18 chr12 99578624 99578849 -21678681 - MIR SINE MIR -21 241 1 1 1344 220 325 9 17 chr12 99578930 99579046 -21678484 - MIRc SINE MIR -31 237 123 1 1344 933 301 83 39 chr12 99579092 99579686 -21677844 + L1ME1 LINE L1 5267 5885 -294 1 1344 806 234 23 6 chr12 99579964 99580136 -21677394 + B3A SINE B2 2 176 -22 1 1344 363 23 0 0 chr12 99580143 99580187 -21677343 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1344 333 0 0 0 chr12 99580187 99580223 -21677307 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1344 559 207 93 0 chr12 99580505 99580655 -21676875 + B3 SINE B2 53 216 0 1 1344 306 310 41 27 chr12 99581278 99581424 -21676106 - MLT1J LTR MaLR -364 148 1 1 1344 484 325 29 15 chr12 99581496 99581702 -21675828 + LTR79 LTR ERVL 310 518 -9 1 1344 2989 302 87 22 chr12 99583185 99584388 -21673142 - Lx8 LINE L1 -2 7471 6191 1 1344 440 343 20 20 chr12 99585281 99585483 -21672047 + B4A SINE B4 1 202 -90 1 1344 942 273 10 56 chr12 99585506 99585812 -21671718 + B4 SINE B4 1 292 0 1 1344 333 102 0 0 chr12 99585834 99585893 -21671637 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1344 324 191 29 0 chr12 99586157 99586225 -21671305 + B3A SINE B2 1 70 -128 1 1344 2225 100 36 10 chr12 99586228 99586658 -21670872 + RLTR44D LTR ERVK 2 452 0 1 1344 626 255 43 0 chr12 99586658 99586803 -21670727 + B3 SINE B2 63 214 -2 1 1344 333 0 0 0 chr12 99586860 99586897 -21670633 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1344 528 16 0 0 chr12 99587089 99587150 -21670380 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1344 4401 198 28 45 chr12 99587747 99588784 -21668746 - RMER1A Other Other -11 1019 1 1 1344 557 293 38 19 chr12 99588789 99588949 -21668581 - RMER1A Other Other -789 241 79 1 1344 583 283 13 17 chr12 99588937 99589125 -21668405 - RMER1A Other Other -810 220 84 1 1344 327 232 10 10 chr12 99589126 99589222 -21668308 + MLT1B LTR MaLR 80 175 -215 1 1344 1106 63 7 0 chr12 99589222 99589364 -21668166 - L1_Mus3 LINE L1 -832 5806 5664 1 1344 4773 34 16 0 chr12 99589366 99589925 -21667605 + L1Md_F3 LINE L1 6003 6570 -14 1 1344 366 345 87 13 chr12 99590794 99591002 -21666528 - MLT1C LTR MaLR -2 465 246 1 1344 501 17 0 0 chr12 99591002 99591060 -21666470 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1344 366 345 87 13 chr12 99591060 99591080 -21666450 - MLT1C LTR MaLR -222 245 222 1 1344 423 0 0 0 chr12 99591098 99591145 -21666385 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1344 343 107 13 34 chr12 99591158 99591225 -21666305 - B2_Mm2 SINE B2 -82 116 46 1 1344 355 191 0 0 chr12 99591312 99591375 -21666155 - B2_Mm1t SINE B2 -38 155 93 1 1344 377 177 13 0 chr12 99591458 99591537 -21665993 + CT-rich Low_complexity Low_complexity 3 82 0 1 1344 947 262 84 7 chr12 99591816 99592112 -21665418 - ORR1E LTR MaLR 0 359 41 1 1344 1207 55 7 0 chr12 99592430 99592575 -21664955 - B1_Mm SINE Alu 0 147 2 1 1344 1167 68 7 0 chr12 99593124 99593270 -21664260 + B1_Mus1 SINE Alu 2 148 0 1 1344 1959 92 3 69 chr12 99593443 99593792 -21663738 + IAPLTR1a_Mm LTR ERVK 1 326 -11 1 1344 58667 11 11 0 chr12 99593793 99600201 -21657329 + IAPEz-int LTR ERVK 1 6481 0 1 1344 1949 95 3 69 chr12 99600201 99600550 -21656980 + IAPLTR1a_Mm LTR ERVK 1 326 -11 1 1344 310 323 0 0 chr12 99600709 99600805 -21656725 - RMER15-int LTR ERVL -2576 2423 2328 1 1344 585 212 27 4 chr12 99600903 99601171 -21656359 + (TA)n Simple_repeat Simple_repeat 1 274 0 1 1344 228 182 140 54 chr12 99601196 99601289 -21656241 - Lx9 LINE L1 -124 7520 7420 1 1344 1194 226 60 79 chr12 99601289 99601697 -21655833 - MT2A LTR ERVL -94 490 1 1 1344 2060 107 0 27 chr12 99601890 99602218 -21655312 + ORR1A3 LTR MaLR 1 319 -7 1 1344 326 247 50 20 chr12 99602322 99602421 -21655109 - RMER15-int LTR ERVL -3283 1716 1615 1 1344 1080 166 30 0 chr12 99602631 99602830 -21654700 + URR1A DNA MER1_type 22 226 0 1 1344 781 287 52 103 chr12 99602830 99602941 -21654589 - RMER15-int LTR ERVL -3390 1609 1500 1 1344 1126 49 35 0 chr12 99602941 99603083 -21654447 + B1_Mus1 SINE Alu 2 148 0 1 1344 781 287 52 103 chr12 99603083 99603349 -21654181 - RMER15-int LTR ERVL -3500 1499 1250 1 1344 1266 199 154 39 chr12 99603349 99603679 -21653851 - ORR1D1 LTR MaLR -2 372 5 1 1344 781 287 52 103 chr12 99603679 99603719 -21653811 - RMER15-int LTR ERVL -3750 1249 1212 1 1344 267 351 0 26 chr12 99603792 99603944 -21653586 - RMER15-int LTR ERVL -4338 661 514 1 1344 324 0 0 0 chr12 99603944 99603980 -21653550 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1344 616 319 25 22 chr12 99604060 99604336 -21653194 - B4A SINE B4 -6 286 10 1 1344 634 323 40 0 chr12 99604378 99604579 -21652951 - RMER15-int LTR ERVL -4588 411 203 1 1344 396 0 0 0 chr12 99604645 99604689 -21652841 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1344 292 330 92 9 chr12 99604733 99604962 -21652568 - L1MEc LINE L1 -4474 1926 1679 1 1344 870 226 100 19 chr12 99605937 99606207 -21651323 - RMER21B LTR ERV1 -275 567 276 1 1344 315 191 0 0 chr12 99606779 99606842 -21650688 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1344 226 263 17 17 chr12 99606850 99606908 -21650622 - L1MEc LINE L1 -6303 97 40 1 1344 22 0 0 0 chr12 99606910 99606932 -21650598 + AT_rich Low_complexity Low_complexity 1 22 0 1 1344 450 200 45 167 chr12 99607161 99607383 -21650147 + RMER15 LTR ERVL 1 195 -380 1 1344 417 231 160 34 chr12 99607431 99607606 -21649924 + RMER15 LTR ERVL 379 575 0 1 1344 326 308 130 8 chr12 99607649 99607780 -21649750 + MER58A DNA MER1_type 46 192 -32 1 1344 2923 120 63 37 chr12 99608052 99608563 -21648967 + RLTR28 LTR ERVL 1 524 0 1 1344 289 281 14 79 chr12 99608591 99608730 -21648800 + L1MB7 LINE L1 5974 6105 -79 1 1344 225 231 0 0 chr12 99608754 99608806 -21648724 - L1MB5 LINE L1 -211 5963 5912 1 1344 335 333 14 14 chr12 99608972 99609112 -21648418 - MER63D DNA AcHobo -443 618 479 1 1344 653 214 14 28 chr12 99609324 99609468 -21648062 + B3A SINE B2 1 142 -56 1 1344 369 43 0 0 chr12 99609475 99609522 -21648008 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1344 698 242 125 102 chr12 99609634 99609947 -21647583 - RMER12 LTR ERVK 0 1322 1003 1 1344 843 105 0 0 chr12 99609966 99610090 -21647440 + (CA)n Simple_repeat Simple_repeat 1 124 0 1 1344 4190 139 89 28 chr12 99610095 99610930 -21646600 - RMER12 LTR ERVK -436 886 1 1 1344 384 216 68 51 chr12 99611687 99611804 -21645726 + RMER15 LTR ERVL 336 454 -121 1 1344 621 0 0 0 chr12 99612745 99612814 -21644716 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 1 1344 1166 76 0 0 chr12 99612814 99612959 -21644571 - B1_Mus1 SINE Alu -2 146 2 1 1344 1043 313 94 9 chr12 99613056 99613585 -21643945 - Lx8 LINE L1 -28 7445 6872 1 1344 1491 327 118 6 chr12 99613614 99614401 -21643129 - Lx8 LINE L1 0 7473 6599 1 1344 266 0 29 0 chr12 99614533 99614567 -21642963 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1344 30 45 0 0 chr12 99614594 99614638 -21642892 + AT_rich Low_complexity Low_complexity 1 44 0 1 20 1002 261 98 22 chr12 99614658 99615014 -21642516 + Lx8 LINE L1 6228 6610 -863 1 1345 2203 118 9 26 chr12 99615595 99615944 -21641586 + Lx3A LINE L1 6633 6975 -6 1 1345 36 23 0 0 chr12 99615944 99615987 -21641543 + AT_rich Low_complexity Low_complexity 1 43 0 1 1345 241 311 23 58 chr12 99615987 99616158 -21641372 + L1M2 LINE L1 4597 4761 -1382 1 1345 435 92 0 0 chr12 99616192 99616257 -21641273 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1345 414 45 0 15 chr12 99616606 99616674 -21640856 - L1Md_F3 LINE L1 0 6584 6518 1 1345 238 361 98 0 chr12 99616812 99616934 -21640596 + ORR1E LTR MaLR 3 136 -223 1 1345 522 89 11 22 chr12 99616962 99617054 -21640476 + (TCC)n Simple_repeat Simple_repeat 2 92 0 1 1345 495 0 0 0 chr12 99617050 99617105 -21640425 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1345 334 257 8 68 chr12 99617598 99617715 -21639815 + MT2A LTR ERVL 3 112 -421 1 1345 623 286 6 0 chr12 99617730 99617898 -21639632 + MT2A LTR ERVL 231 399 -134 1 1345 210 191 0 0 chr12 99619921 99619963 -21637567 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1345 469 260 94 0 chr12 99620669 99620796 -21636734 + ID_B1 SINE B4 84 222 -2 1 1345 2647 103 8 5 chr12 99621205 99621587 -21635943 + RLTR9A2 LTR ERVK 1 383 0 1 1345 451 246 14 0 chr12 99622005 99622125 -21635405 + ORR1E LTR MaLR 3 128 -242 1 1345 229 309 191 0 chr12 99622495 99622589 -21634941 - MLT1J-int LTR MaLR -633 754 643 1 1345 356 336 71 30 chr12 99623241 99623508 -21634022 - HAL1 LINE L1 -760 1747 1470 1 1345 194 0 0 37 chr12 99623864 99623891 -21633639 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1345 181 53 25 50 chr12 99623935 99623975 -21633555 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1345 234 0 0 0 chr12 99623995 99624021 -21633509 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1345 270 138 154 0 chr12 99625043 99625108 -21632422 + Zaphod DNA Tip100 3887 3961 -70 1 1345 552 30 0 0 chr12 99627058 99627124 -21630406 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 1 1345 1194 63 0 0 chr12 99627125 99627267 -21630263 - B1_Mus2 SINE Alu -5 142 1 1 1345 1779 237 69 31 chr12 99628635 99629306 -21628224 + Lx5 LINE L1 5843 6759 -701 1 1345 468 0 0 0 chr12 99630629 99630681 -21626849 + (TGG)n Simple_repeat Simple_repeat 1 52 0 1 1345 221 0 35 0 chr12 99630682 99630711 -21626819 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 1345 1062 78 0 41 chr12 99630713 99630860 -21626670 - B1_Mus1 SINE Alu -7 141 1 1 1345 272 224 17 0 chr12 99632755 99632813 -21624717 + MamRep1894 DNA hAT 2 60 -63 1 1345 299 311 85 43 chr12 99633348 99633583 -21623947 + ORR1E LTR MaLR 9 253 -106 2 1345 2456 344 107 28 chr12 99633711 99635124 -21622406 + ORR1E-int LTR MaLR 1 1527 -53 2 1345 369 317 67 75 chr12 99635124 99635502 -21622028 + ORR1E LTR MaLR 1 370 0 2 1345 205 176 0 0 chr12 99638935 99638969 -21618561 + CT-rich Low_complexity Low_complexity 5 38 0 2 1345 200 271 0 0 chr12 99644233 99644281 -21613249 + (CCA)n Simple_repeat Simple_repeat 2 49 0 2 1345 345 202 47 12 chr12 99645561 99645646 -21611884 + MTEb LTR MaLR 278 365 -14 2 1345 598 322 98 57 chr12 99645685 99646073 -21611457 + MTE-int LTR MaLR 41 444 -1136 2 1345 500 300 44 88 chr12 99646398 99646716 -21610814 + MTE-int LTR MaLR 824 1127 -453 2 1345 1831 5 0 0 chr12 99648704 99648911 -21608619 + L1Md_T LINE L1 6376 6582 0 2 1345 1109 95 0 0 chr12 99650609 99650757 -21606773 + B1_Mus1 SINE Alu 1 148 0 2 1345 1485 34 0 0 chr12 99650758 99650937 -21606593 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 1345 602 69 23 0 chr12 99650937 99651024 -21606506 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 2 1345 417 232 97 21 chr12 99653109 99653254 -21604276 - Lx9 LINE L1 -177 7467 7312 2 1345 274 301 63 38 chr12 99653572 99653731 -21603799 - MER5A1 DNA MER1_type -2 164 2 2 1345 197 278 48 58 chr12 99656792 99656895 -21600635 - MIRb SINE MIR -101 167 66 2 1345 277 86 17 17 chr12 99657048 99657107 -21600423 + (CAAAAA)n Simple_repeat Simple_repeat 6 64 0 2 1345 378 0 0 0 chr12 99657638 99657680 -21599850 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1345 295 305 0 54 chr12 99659412 99659561 -21597969 + GA-rich Low_complexity Low_complexity 1 141 0 2 1345 282 211 18 0 chr12 99660266 99660323 -21597207 + L2c LINE L2 3325 3382 -5 2 1345 218 158 35 0 chr12 99664919 99664976 -21592554 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 1345 272 200 10 133 chr12 99665161 99665259 -21592271 - URR1B DNA MER1_type -139 86 1 2 1345 1955 155 36 36 chr12 99666292 99666709 -21590821 - Lx4B LINE L1 -30 7028 6690 2 1345 252 67 89 0 chr12 99666696 99666741 -21590789 + Lx4B LINE L1 6632 6680 -378 2 1345 242 339 0 26 chr12 99666906 99667021 -21590509 - Charlie1a DNA MER1_type -1342 113 2 2 1345 441 95 0 0 chr12 99669519 99669582 -21587948 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1345 189 0 0 0 chr12 99669583 99669604 -21587926 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1345 261 83 0 0 chr12 99670379 99670415 -21587115 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1345 282 295 84 60 chr12 99670533 99670699 -21586831 + MIRb SINE MIR 73 242 -26 2 1345 208 28 26 53 chr12 99672943 99672981 -21584549 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 2 1345 310 239 0 33 chr12 99674127 99674218 -21583312 + BC1_Mm scRNA scRNA 5 92 -60 2 1345 302 217 0 16 chr12 99674215 99674276 -21583254 + MER81 DNA AcHobo 54 113 -1 2 1345 540 271 0 15 chr12 99674916 99675047 -21582483 + B1F2 SINE Alu 15 143 -6 2 1345 211 122 0 39 chr12 99675091 99675142 -21582388 + (ATG)n Simple_repeat Simple_repeat 3 51 0 2 1345 254 271 10 50 chr12 99675164 99675265 -21582265 + GA-rich Low_complexity Low_complexity 5 101 0 2 1345 1213 54 0 0 chr12 99675929 99676076 -21581454 + B1_Mm SINE Alu 1 147 0 2 1345 636 224 178 11 chr12 99676130 99676315 -21581215 + B3 SINE B2 1 216 0 2 1345 814 325 28 19 chr12 99676795 99677112 -21580418 + MER2 DNA MER2_type 2 321 -24 2 1345 394 323 12 12 chr12 99677236 99677396 -21580134 + B4A SINE B4 3 162 -130 2 1345 192 158 0 0 chr12 99677440 99677478 -21580052 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1345 488 93 13 0 chr12 99678469 99678544 -21578986 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 2 1345 292 210 0 0 chr12 99678649 99678711 -21578819 - BC1_Mm scRNA scRNA -89 63 2 2 1345 363 337 59 18 chr12 99680070 99680239 -21577291 - MIRm SINE MIR -9 199 24 2 1345 248 91 0 22 chr12 99681933 99681978 -21575552 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 2 1345 26 0 0 0 chr12 99682668 99682694 -21574836 + AT_rich Low_complexity Low_complexity 1 26 0 2 1345 216 0 0 0 chr12 99683713 99683737 -21573793 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1345 558 217 146 84 chr12 99684273 99684357 -21573173 - RMER15 LTR ERVL 0 575 485 2 1345 306 0 39 39 chr12 99684357 99684408 -21573122 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1345 558 217 146 84 chr12 99684408 99684549 -21572981 - RMER15 LTR ERVL -91 484 337 2 1345 216 0 0 0 chr12 99684862 99684886 -21572644 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1345 217 230 13 13 chr12 99686226 99686301 -21571229 + GA-rich Low_complexity Low_complexity 3 77 0 2 1345 286 276 22 22 chr12 99686312 99686401 -21571129 + GA-rich Low_complexity Low_complexity 3 91 0 2 1345 375 105 0 0 chr12 99686800 99686857 -21570673 + (T)n Simple_repeat Simple_repeat 1 57 0 2 1345 1195 48 0 20 chr12 99686857 99687007 -21570523 - B1_Mus1 SINE Alu 0 148 2 2 1345 1057 215 10 5 chr12 99687779 99687985 -21569545 + B3 SINE B2 1 207 -9 2 1345 844 129 7 7 chr12 99688918 99689066 -21568464 + (GAA)n Simple_repeat Simple_repeat 3 150 0 2 1345 666 0 0 0 chr12 99689066 99689140 -21568390 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 2 1345 207 162 0 0 chr12 99689596 99689633 -21567897 + (CCA)n Simple_repeat Simple_repeat 2 38 0 2 1345 437 207 86 8 chr12 99689638 99689755 -21567775 + RLTR28B LTR ERVL 1 126 -355 2 1345 232 200 0 57 chr12 99689848 99689901 -21567629 + RLTR28B LTR ERVL 461 510 -14 2 1345 212 213 0 16 chr12 99690850 99690912 -21566618 + (CCA)n Simple_repeat Simple_repeat 2 62 0 2 1345 639 121 0 0 chr12 99692449 99692548 -21564982 + (TTCTCC)n Simple_repeat Simple_repeat 3 101 0 2 1345 1070 128 45 10 chr12 99692786 99692984 -21564546 + MTD LTR MaLR 215 419 0 2 1345 673 219 166 59 chr12 99693545 99693798 -21563732 - B4 SINE B4 -8 284 5 2 1345 325 250 92 26 chr12 99694011 99694163 -21563367 + MER20B DNA MER1_type 558 719 -64 2 1345 360 0 0 0 chr12 99694741 99694781 -21562749 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1345 544 236 223 6 chr12 99694958 99695124 -21562406 + B3 SINE B2 8 209 -7 2 1345 860 249 178 11 chr12 99695402 99695678 -21561852 - ORR1D2 LTR MaLR -7 363 42 2 1345 267 31 0 0 chr12 99697267 99697299 -21560231 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1345 877 128 0 39 chr12 99697946 99698100 -21559430 - URR1B DNA MER1_type 0 225 78 2 1345 288 286 12 0 chr12 99698101 99698185 -21559345 + L1MB4 LINE L1 6094 6178 -2 2 1345 769 230 15 51 chr12 99698228 99698425 -21559105 - B3A SINE B2 -1 197 8 2 1345 306 330 9 18 chr12 99698524 99698635 -21558895 + RSINE1 SINE B4 25 134 -31 2 1345 309 51 0 0 chr12 99698648 99698687 -21558843 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1345 483 18 0 0 chr12 99698687 99698743 -21558787 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 1345 697 281 76 33 chr12 99699282 99699558 -21557972 + B4A SINE B4 1 288 -4 2 1345 4462 16 0 12 chr12 99699637 99700136 -21557394 + MT2_Mm LTR ERVL 1 493 0 2 1345 48991 14 0 0 chr12 99700136 99705495 -21552035 + MERVL-int LTR ERVL 1 5360 -125 2 1345 344 179 46 35 chr12 99705495 99705582 -21551948 + ORR1A3-int LTR MaLR 553 640 -1323 2 1345 309 26 0 0 chr12 99705582 99705620 -21551910 + MERVL-int LTR ERVL 5448 5485 0 2 1345 3767 11 119 14 chr12 99705620 99706066 -21551464 + MT2_Mm LTR ERVL 1 493 0 2 1345 332 295 104 26 chr12 99706431 99706678 -21550852 - ORR1E LTR MaLR -1 378 96 2 1345 551 281 15 80 chr12 99706905 99707100 -21550430 + B4A SINE B4 59 240 -52 2 1345 975 115 0 0 chr12 99707100 99707248 -21550282 + (TGGA)n Simple_repeat Simple_repeat 2 149 0 2 1345 771 221 114 53 chr12 99708695 99708958 -21548572 + B4A SINE B4 1 279 -13 2 1345 270 0 0 0 chr12 99708976 99709006 -21548524 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 1345 333 102 0 0 chr12 99709006 99709064 -21548466 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1345 486 135 0 0 chr12 99709064 99709168 -21548362 + (TC)n Simple_repeat Simple_repeat 2 105 0 2 1345 1218 47 0 7 chr12 99709309 99709458 -21548072 + B1_Mus1 SINE Alu 1 148 0 2 1345 306 73 0 0 chr12 99710151 99710192 -21547338 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1345 420 71 0 0 chr12 99710290 99710346 -21547184 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1345 285 74 74 0 chr12 99710388 99710442 -21547088 + L1_Mus4 LINE L1 6579 6636 0 2 1345 276 274 19 0 chr12 99710482 99710588 -21546942 + (TCTCTG)n Simple_repeat Simple_repeat 3 110 0 2 1345 208 115 66 0 chr12 99710588 99710649 -21546881 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 2 1345 738 188 0 0 chr12 99710651 99710811 -21546719 + CT-rich Low_complexity Low_complexity 2 161 0 2 1345 4802 104 19 3 chr12 99711149 99711841 -21545689 + L1_Mus3 LINE L1 5933 6635 -3 2 1345 353 86 17 0 chr12 99712180 99712238 -21545292 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1345 3154 70 15 10 chr12 99712756 99713161 -21544369 + MTB_Mm LTR MaLR 1 407 0 2 1345 325 234 13 25 chr12 99714251 99714330 -21543200 - MER5A DNA MER1_type -4 185 108 2 1345 246 143 31 16 chr12 99714564 99714628 -21542902 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1345 818 255 108 12 chr12 99714663 99714913 -21542617 + L1MC1 LINE L1 4680 4953 -1193 2 1345 453 50 0 0 chr12 99714919 99714979 -21542551 + (TGGA)n Simple_repeat Simple_repeat 4 63 0 2 1345 749 313 85 0 chr12 99715012 99715271 -21542259 + B4A SINE B4 2 282 -10 2 1345 1529 282 137 43 chr12 99715441 99716071 -21541459 + L1MC1 LINE L1 5320 6029 -304 2 1345 2820 123 74 22 chr12 99716071 99716568 -21540962 + RLTR28 LTR ERVL 1 523 -1 2 1345 1529 282 137 43 chr12 99716568 99716782 -21540748 + L1MC1 LINE L1 6030 6244 -89 2 1345 238 238 16 0 chr12 99716815 99716878 -21540652 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1345 272 224 60 0 chr12 99716894 99716961 -21540569 + L1MC1 LINE L1 6254 6324 -9 2 1345 285 345 9 26 chr12 99717011 99717124 -21540406 + MLT1L LTR MaLR 310 420 -190 2 1345 189 0 0 0 chr12 99717124 99717145 -21540385 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1345 531 293 171 19 chr12 99717637 99717901 -21539629 + MLT1E2 LTR MaLR 93 396 -231 2 1345 512 304 85 22 chr12 99718027 99718299 -21539231 + RMER15 LTR ERVL 272 560 -15 2 1345 418 307 97 20 chr12 99718332 99718528 -21539002 + MLT1E2 LTR MaLR 413 623 -4 2 1345 405 0 0 0 chr12 99718811 99718856 -21538674 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1345 1047 274 18 14 chr12 99720353 99720634 -21536896 + B4A SINE B4 1 282 -10 3 1345 1179 78 0 0 chr12 99721244 99721452 -21536078 + (TG)n Simple_repeat Simple_repeat 1 208 0 3 1345 258 261 130 0 chr12 99721494 99721563 -21535967 - RSINE1 SINE B4 -83 82 5 3 1345 36619 35 0 0 chr12 99721641 99726541 -21530989 + L1Md_T LINE L1 593 5589 -297 3 1345 8686 29 0 0 chr12 99726541 99727535 -21529995 + L1Md_T LINE L1 5590 6583 -2 3 1345 555 294 156 20 chr12 99727555 99727850 -21529680 + MLT1A1 LTR MaLR 73 407 -1 3 1345 1389 170 5 80 chr12 99730145 99730478 -21527052 - MTB_Mm LTR MaLR -70 309 5 3 1345 229 333 24 12 chr12 99730530 99730615 -21526915 - MER2B DNA MER2_type -247 89 4 3 1345 4192 67 14 9 chr12 99732839 99733397 -21524133 + L1Md_F2 LINE L1 6022 6582 0 3 1345 292 242 9 104 chr12 99733399 99733505 -21524025 + Ricksha_c DNA MuDR 350 445 -1603 3 1345 198 0 0 0 chr12 99733603 99733625 -21523905 + (TCCC)n Simple_repeat Simple_repeat 1 22 0 3 1345 432 0 0 0 chr12 99734069 99734117 -21523413 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1345 524 307 7 7 chr12 99734709 99734860 -21522670 - RSINE1 SINE B4 -14 151 1 3 1345 721 306 60 0 chr12 99735914 99736179 -21521351 - B4A SINE B4 -2 290 10 3 1345 195 393 94 0 chr12 99736668 99736869 -21520661 - MIRb SINE MIR -23 245 26 3 1345 1007 248 46 15 chr12 99737105 99737367 -21520163 + B4 SINE B4 5 274 -18 3 1345 612 91 0 0 chr12 99737395 99737483 -21520047 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1345 774 111 24 8 chr12 99737586 99737713 -21519817 + B1_Mur3 SINE Alu 21 149 0 3 1345 22 56 0 0 chr12 99737927 99737963 -21519567 + AT_rich Low_complexity Low_complexity 1 36 0 3 1345 396 293 90 0 chr12 99738161 99738294 -21519236 + ID_B1 SINE B4 80 224 0 3 1345 302 225 35 70 chr12 99738400 99738486 -21519044 + ID2 SINE ID 1 83 0 3 1345 521 128 10 0 chr12 99738739 99738841 -21518689 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 3 1345 248 286 47 12 chr12 99740434 99740519 -21517011 + MIRb SINE MIR 99 186 -82 3 1345 186 43 0 0 chr12 99740813 99740836 -21516694 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1345 189 0 0 0 chr12 99741842 99741863 -21515667 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 3 1345 453 358 0 12 chr12 99741863 99742014 -21515516 + RSINE1 SINE B4 11 159 -6 3 1345 921 136 11 6 chr12 99743110 99743288 -21514242 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1345 1877 141 78 23 chr12 99744201 99744549 -21512981 + ORR1B2 LTR MaLR 1 367 0 3 1345 213 370 0 12 chr12 99744718 99744800 -21512730 + ID4_ SINE ID 1 81 -2 3 1346 216 123 52 17 chr12 99745880 99745938 -21511592 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1346 617 212 27 7 chr12 99746113 99746260 -21511270 + B3A SINE B2 1 150 -48 3 1346 369 0 0 0 chr12 99746261 99746302 -21511228 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1346 219 339 22 60 chr12 99747820 99748002 -21509528 + MIR SINE MIR 41 215 -47 3 1346 349 314 76 0 chr12 99748143 99748261 -21509269 - MER20 DNA MER1_type -77 142 16 3 1346 251 28 28 0 chr12 99749392 99749428 -21508102 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 3 1346 187 278 86 69 chr12 99749512 99749628 -21507902 + MIRc SINE MIR 39 156 -112 3 1346 624 257 43 107 chr12 99750277 99750530 -21507000 + B4 SINE B4 56 292 0 3 1346 195 100 0 0 chr12 99750555 99750585 -21506945 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1346 24534 63 0 0 chr12 99750597 99753679 -21503851 + L1Md_F2 LINE L1 2504 5586 -297 3 1346 8197 50 0 1 chr12 99753679 99754664 -21502866 + L1Md_F2 LINE L1 5587 6570 -12 3 1346 183 80 0 0 chr12 99757057 99757082 -21500448 + (GAGAA)n Simple_repeat Simple_repeat 1 25 0 3 1346 180 0 0 0 chr12 99757226 99757246 -21500284 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1346 515 167 46 0 chr12 99757636 99757744 -21499786 + RLTR11A LTR ERVK 1 113 -414 3 1346 1134 123 342 6 chr12 99757838 99758165 -21499365 + RLTR11A LTR ERVK 92 528 0 3 1346 308 238 35 12 chr12 99758165 99758247 -21499283 + B4A SINE B4 209 292 0 3 1346 262 134 30 0 chr12 99758307 99758374 -21499156 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1346 441 0 0 0 chr12 99758374 99758423 -21499107 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1346 187 411 9 0 chr12 99759493 99759600 -21497930 + L2 LINE L2 2670 2777 -642 3 1346 236 286 252 0 chr12 99759667 99759786 -21497744 + MLT1D LTR MaLR 22 170 -335 3 1346 253 218 0 0 chr12 99759989 99760044 -21497486 + L2a LINE L2 3348 3402 -24 3 1346 391 306 0 9 chr12 99760349 99760458 -21497072 - PB1D10 SINE Alu -1 116 9 3 1346 1227 259 16 16 chr12 99761433 99761743 -21495787 + Lx8 LINE L1 6702 7011 -462 3 1346 431 176 0 11 chr12 99761890 99761982 -21495548 + GA-rich Low_complexity Low_complexity 3 93 0 3 1346 292 309 72 9 chr12 99762845 99762956 -21494574 + MIRc SINE MIR 85 202 -66 3 1346 297 172 0 0 chr12 99763286 99763350 -21494180 + (TGG)n Simple_repeat Simple_repeat 3 66 0 3 1346 697 334 36 68 chr12 99763455 99763924 -21493606 - LTR16B2 LTR ERVL -8 454 1 3 1346 1346 83 28 0 chr12 99764345 99764526 -21493004 - B2_Mm2 SINE B2 -9 186 1 3 1346 213 305 47 35 chr12 99764759 99764844 -21492686 - L2c LINE L2 -4 3383 3298 3 1346 191 256 60 120 chr12 99764861 99764994 -21492536 - MIR SINE MIR -39 223 99 3 1346 484 274 79 57 chr12 99765737 99765865 -21491665 + L1MA4 LINE L1 5699 5832 -468 3 1346 844 157 22 0 chr12 99765865 99765999 -21491531 + B1_Mur4 SINE Alu 1 137 -13 3 1346 213 39 0 0 chr12 99765999 99766025 -21491505 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 3 1346 484 293 94 60 chr12 99766025 99766225 -21491305 + L1MA4 LINE L1 5800 6009 -1635 3 1346 308 335 85 30 chr12 99766341 99766541 -21490989 + Lx8 LINE L1 7173 7383 -90 3 1346 279 79 0 0 chr12 99766599 99766637 -21490893 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 3 1346 2053 113 18 83 chr12 99768111 99768508 -21489022 + ORR1B1 LTR MaLR 1 371 -23 3 1346 531 278 115 17 chr12 99769157 99769391 -21488139 + B4A SINE B4 1 257 -35 3 1346 540 30 0 0 chr12 99769622 99769688 -21487842 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 3 1346 270 0 0 0 chr12 99771371 99771401 -21486129 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 1346 637 162 60 0 chr12 99771405 99771522 -21486008 - B1_Mur3 SINE Alu -23 126 3 3 1346 447 145 53 0 chr12 99771696 99771772 -21485758 + B2_Mm2 SINE B2 61 140 -55 3 1346 279 0 0 0 chr12 99771782 99771813 -21485717 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 1346 298 230 221 38 chr12 99772346 99772504 -21485026 + MLT1A0 LTR MaLR 179 365 0 3 1346 1123 248 139 3 chr12 99772669 99773001 -21484529 + MTEb LTR MaLR 1 377 -2 3 1346 186 167 0 0 chr12 99775420 99775456 -21482074 + T-rich Low_complexity Low_complexity 5 40 0 3 1346 547 249 97 27 chr12 99775470 99775656 -21481874 - ID_B1 SINE B4 0 224 26 3 1346 414 272 102 17 chr12 99775823 99775999 -21481531 + MER53 DNA hAT 3 193 0 3 1346 279 302 0 0 chr12 99776177 99776240 -21481290 + tRNA-Ala-GCY_ tRNA tRNA 1 63 -12 3 1346 258 279 0 71 chr12 99776240 99776256 -21481274 + ID4_ SINE ID 20 80 -3 3 1346 455 97 33 58 chr12 99776622 99776743 -21480787 + CT-rich Low_complexity Low_complexity 3 120 0 3 1346 441 160 119 28 chr12 99776799 99776908 -21480622 - Lx7 LINE L1 0 7696 7578 3 1346 443 258 53 50 chr12 99776911 99777177 -21480353 + MLT1A1 LTR MaLR 123 408 0 3 1346 755 146 80 7 chr12 99777340 99777478 -21480052 + B1_Mur3 SINE Alu 2 149 0 3 1346 203 419 15 7 chr12 99777583 99777720 -21479810 + L2a LINE L2 3031 3168 -258 3 1346 1091 308 28 35 chr12 99777730 99778130 -21479400 + MLT2D LTR ERVL 9 405 -9 3 1346 383 56 19 0 chr12 99778383 99778437 -21479093 + (TAA)n Simple_repeat Simple_repeat 2 56 0 3 1346 6054 63 30 1 chr12 99779354 99780127 -21477403 + L1_Mus1 LINE L1 5773 6567 0 3 1346 32 43 0 0 chr12 99780172 99780218 -21477312 + AT_rich Low_complexity Low_complexity 1 46 0 3 1346 645 58 0 0 chr12 99780337 99780423 -21477107 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 1346 586 285 76 72 chr12 99780440 99780731 -21476799 - B4A SINE B4 0 292 1 3 1346 441 296 148 0 chr12 99780746 99780888 -21476642 - B3 SINE B2 -53 163 1 3 1346 261 243 16 116 chr12 99782184 99782305 -21475225 - RMER1C Other Other -1 1341 1233 3 1346 744 297 107 46 chr12 99782201 99782611 -21474919 - Lx8 LINE L1 0 7473 7039 3 1346 407 292 175 55 chr12 99782840 99783148 -21474382 + MLT1G3 LTR MaLR 204 548 -47 3 1346 262 309 194 0 chr12 99783335 99783500 -21474030 - MIR SINE MIR -39 223 27 3 1346 215 224 20 0 chr12 99783544 99783593 -21473937 + MIRb SINE MIR 197 246 -22 3 1346 329 225 55 22 chr12 99783731 99783822 -21473708 - PB1D9 SINE Alu -18 102 9 3 1346 270 0 0 0 chr12 99784613 99784643 -21472887 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3 1346 627 282 33 59 chr12 99784721 99785211 -21472319 + Lx9 LINE L1 5690 6173 -1300 3 1346 211 291 22 34 chr12 99785363 99785452 -21472078 + GA-rich Low_complexity Low_complexity 1 88 0 3 1346 473 240 182 0 chr12 99786063 99786184 -21471346 + B3A SINE B2 1 143 -55 3 1346 441 36 0 0 chr12 99786196 99786251 -21471279 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1346 183 42 0 0 chr12 99787137 99787161 -21470369 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1346 275 198 29 29 chr12 99787172 99787276 -21470254 + (TTTG)n Simple_repeat Simple_repeat 1 104 0 3 1346 21 0 0 0 chr12 99787316 99787337 -21470193 + AT_rich Low_complexity Low_complexity 1 21 0 3 1346 203 314 71 0 chr12 99788008 99788111 -21469419 + MIRb SINE MIR 1 116 -152 4 1346 426 261 221 12 chr12 99789878 99790041 -21467489 - B4A SINE B4 -43 249 53 4 1346 497 16 16 0 chr12 99790054 99790116 -21467414 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1346 932 293 131 6 chr12 99790416 99790776 -21466754 + Lx8 LINE L1 7063 7467 -6 4 1346 287 284 12 0 chr12 99792152 99792233 -21465297 - MTEb LTR MaLR -1 378 297 4 1346 245 259 34 80 chr12 99792906 99792994 -21464536 + MT2B2 LTR ERVL 157 240 -344 4 1346 390 320 0 0 chr12 99792922 99793022 -21464508 + PB1D10 SINE Alu 11 110 -7 4 1346 288 261 107 13 chr12 99793062 99793221 -21464309 + Lx9 LINE L1 6164 6337 -1307 4 1346 500 167 7 36 chr12 99793224 99793361 -21464169 + (CATA)n Simple_repeat Simple_repeat 2 134 0 4 1346 2769 281 65 35 chr12 99793366 99794252 -21463278 + Lx9 LINE L1 6251 7163 -481 4 1346 448 234 46 9 chr12 99794346 99794454 -21463076 - PB1D10 SINE Alu -1 116 5 4 1346 335 141 0 15 chr12 99794923 99794988 -21462542 + (CAT)n Simple_repeat Simple_repeat 2 65 0 4 1346 222 196 0 35 chr12 99795793 99795851 -21461679 + (CAGA)n Simple_repeat Simple_repeat 2 57 0 4 1346 438 327 6 24 chr12 99796335 99796423 -21461107 + polypurine Low_complexity Low_complexity 5 90 0 4 1346 1578 160 129 51 chr12 99796423 99796595 -21460935 + ORR1C2 LTR MaLR 1 170 -214 4 1346 594 0 0 0 chr12 99796595 99796661 -21460869 + (TC)n Simple_repeat Simple_repeat 2 67 0 4 1346 1578 160 129 51 chr12 99796661 99796844 -21460686 + ORR1C2 LTR MaLR 171 384 0 4 1346 438 327 6 24 chr12 99796844 99796924 -21460606 + polypurine Low_complexity Low_complexity 91 169 0 4 1346 258 81 0 0 chr12 99797225 99797262 -21460268 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 4 1346 22 0 0 0 chr12 99797829 99797851 -21459679 + AT_rich Low_complexity Low_complexity 1 22 0 4 1346 1100 54 0 45 chr12 99797906 99797919 -21459611 - B1_Mus1 SINE Alu 0 148 136 4 1346 243 61 0 0 chr12 99797919 99797952 -21459578 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 4 1346 1100 54 0 45 chr12 99797952 99798092 -21459438 - B1_Mus1 SINE Alu -13 135 2 4 1346 834 315 135 31 chr12 99798264 99798856 -21458674 - MER82 DNA MER2_type 0 653 1 4 1346 357 326 50 61 chr12 99799142 99799466 -21458064 - LTR16C LTR ERVL -1 537 145 4 1346 333 260 79 50 chr12 99799529 99799630 -21457900 + PB1D10 SINE Alu 1 104 -13 4 1346 345 93 0 0 chr12 99799686 99799740 -21457790 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1346 475 290 115 54 chr12 99799884 99800198 -21457332 - ORR1E LTR MaLR -5 354 22 4 1346 668 167 152 7 chr12 99801794 99801945 -21455585 + B3 SINE B2 43 215 -1 4 1346 447 271 36 0 chr12 99802049 99802189 -21455341 + B4A SINE B4 75 219 -73 4 1346 333 62 0 0 chr12 99802191 99802239 -21455291 + (A)n Simple_repeat Simple_repeat 1 48 0 4 1346 219 218 0 0 chr12 99802337 99802392 -21455138 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1346 471 281 18 0 chr12 99802401 99802515 -21455015 + RSINE1 SINE B4 3 118 -47 4 1346 198 103 0 0 chr12 99802517 99802546 -21454984 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 4 1346 21 36 0 0 chr12 99802596 99802624 -21454906 + AT_rich Low_complexity Low_complexity 1 28 0 4 1346 250 39 55 73 chr12 99803376 99803431 -21454099 + T-rich Low_complexity Low_complexity 1 54 0 4 1346 423 0 0 0 chr12 99803717 99803764 -21453766 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1346 264 310 102 34 chr12 99803934 99804081 -21453449 - MIRc SINE MIR -26 242 86 4 1346 393 264 105 53 chr12 99805040 99805192 -21452338 + B4A SINE B4 55 214 -78 4 1346 583 13 26 0 chr12 99805195 99805271 -21452259 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 4 1346 359 121 30 0 chr12 99805302 99805368 -21452162 + (CATA)n Simple_repeat Simple_repeat 1 68 0 4 1346 198 0 0 0 chr12 99805901 99805923 -21451607 + (CCA)n Simple_repeat Simple_repeat 2 23 0 4 1346 221 294 15 0 chr12 99806487 99806555 -21450975 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1346 240 200 0 0 chr12 99806555 99806625 -21450905 + GA-rich Low_complexity Low_complexity 1 70 0 4 1346 229 257 13 13 chr12 99807492 99807567 -21449963 + MIRc SINE MIR 188 262 -6 4 1346 279 203 0 0 chr12 99808090 99808149 -21449381 + (TCCA)n Simple_repeat Simple_repeat 2 60 0 4 1346 238 259 66 19 chr12 99808166 99808286 -21449244 - L2a LINE L2 -7 3419 3245 4 1346 388 273 20 67 chr12 99808688 99808837 -21448693 - MIRc SINE MIR -125 143 2 4 1346 497 303 25 6 chr12 99809105 99809289 -21448241 + MIR SINE MIR 47 234 -28 4 1346 687 202 81 23 chr12 99809453 99809625 -21447905 + B3 SINE B2 29 210 -6 4 1346 433 241 70 42 chr12 99810708 99810851 -21446679 - B1F SINE Alu -2 147 1 4 1346 252 0 0 0 chr12 99811404 99811432 -21446098 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1346 381 117 0 0 chr12 99812851 99812911 -21444619 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1346 189 311 29 0 chr12 99814154 99814274 -21443256 - L2a LINE L2 -2 3424 3249 4 1346 222 37 0 0 chr12 99814435 99814462 -21443068 + (CCA)n Simple_repeat Simple_repeat 3 29 0 4 1346 491 88 44 0 chr12 99815767 99815858 -21441672 + (GA)n Simple_repeat Simple_repeat 2 96 0 4 1346 209 268 0 0 chr12 99817435 99817506 -21440024 + T-rich Low_complexity Low_complexity 1 71 0 4 1346 264 330 25 34 chr12 99817571 99817690 -21439840 + B1F SINE Alu 23 140 -9 4 1346 262 250 0 0 chr12 99817702 99817750 -21439780 + ID4 SINE ID 8 55 -28 4 1346 1157 55 0 52 chr12 99817766 99817920 -21439610 + B1_Mus2 SINE Alu 2 147 0 4 1346 589 146 14 21 chr12 99817970 99818110 -21439420 + GA-rich Low_complexity Low_complexity 3 141 0 4 1346 346 250 222 65 chr12 99818150 99818398 -21439132 + B4A SINE B4 1 287 -5 4 1346 907 264 172 3 chr12 99818441 99818790 -21438740 + MLT1A1 LTR MaLR 1 408 0 4 1346 675 272 35 55 chr12 99818840 99818960 -21438570 - MER2 DNA MER2_type -6 339 227 4 1346 666 284 0 39 chr12 99818960 99819165 -21438365 - B3A SINE B2 0 198 2 4 1346 675 272 35 55 chr12 99819165 99819301 -21438229 - MER2 DNA MER2_type -119 226 88 4 1346 564 189 118 22 chr12 99819469 99819483 -21438047 - B1F SINE Alu 0 149 137 4 1346 245 27 54 0 chr12 99819483 99819520 -21438010 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 4 1346 564 189 118 22 chr12 99819520 99819640 -21437890 - B1F SINE Alu -13 136 2 4 1346 866 207 64 5 chr12 99819651 99819855 -21437675 - B3 SINE B2 0 216 1 4 1346 1045 182 113 0 chr12 99820356 99820559 -21436971 + URR1A DNA MER1_type 1 226 0 4 1346 381 210 0 24 chr12 99820816 99820899 -21436631 - BC1_Mm scRNA scRNA -70 82 2 4 1346 285 269 62 76 chr12 99820903 99821048 -21436482 - ID_B1 SINE B4 -1 223 81 4 1346 2797 184 7 47 chr12 99821077 99821625 -21435905 + RMER1B Other Other 493 1018 -48 4 1346 434 221 12 0 chr12 99821625 99821711 -21435819 - B4 SINE B4 -204 88 2 4 1346 997 303 35 9 chr12 99822748 99823091 -21434439 - Lx8 LINE L1 -163 7310 6959 4 1346 497 196 0 27 chr12 99824764 99824874 -21432656 - MLT1A1 LTR MaLR 0 408 302 4 1346 234 0 0 0 chr12 99825156 99825182 -21432348 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 1346 339 283 40 60 chr12 99825600 99825805 -21431725 - MTEa LTR MaLR -170 209 5 4 1346 290 115 0 16 chr12 99825910 99825972 -21431558 + (TTTTTG)n Simple_repeat Simple_repeat 3 63 0 4 1346 239 162 222 86 chr12 99826102 99826183 -21431347 - B3A SINE B2 -106 92 1 4 1346 25 31 0 0 chr12 99826739 99826771 -21430759 + AT_rich Low_complexity Low_complexity 1 32 0 4 1346 342 0 0 0 chr12 99827315 99827353 -21430177 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1346 513 0 0 0 chr12 99827533 99827590 -21429940 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 4 1346 278 303 156 13 chr12 99827623 99827777 -21429753 + L1M5 LINE L1 5386 5561 -633 4 1346 526 301 21 14 chr12 99828044 99828189 -21429341 + RSINE1 SINE B4 3 148 -17 4 1346 243 0 0 0 chr12 99828189 99828216 -21429314 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1346 433 207 0 0 chr12 99828262 99828344 -21429186 + ID4_ SINE ID 2 83 0 4 1346 374 256 87 31 chr12 99828980 99829142 -21428388 + MLT1D LTR MaLR 1 170 -457 4 1346 855 252 53 19 chr12 99829190 99829453 -21428077 + B4A SINE B4 1 272 -20 4 1346 1968 161 69 8 chr12 99829478 99829840 -21427690 + ORR1C2 LTR MaLR 1 384 0 4 1346 530 227 114 84 chr12 99829900 99830102 -21427428 + B3A SINE B2 9 216 0 4 1346 292 162 0 81 chr12 99830537 99830611 -21426919 + ID_B1 SINE B4 157 224 0 4 1346 423 48 0 16 chr12 99830548 99830612 -21426918 + B1_Mm SINE Alu 85 147 0 4 1346 604 247 45 17 chr12 99830649 99830826 -21426704 + LTRIS4 LTR ERV1 326 507 0 4 1346 324 0 0 0 chr12 99830842 99830878 -21426652 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1346 483 327 102 38 chr12 99831319 99831355 -21426175 + B4A SINE B4 7 41 -251 4 1346 1879 83 120 65 chr12 99831355 99831664 -21425866 - ORR1A3 LTR MaLR 0 326 1 4 1346 483 327 102 38 chr12 99831664 99831862 -21425668 + B4A SINE B4 42 256 -36 4 1346 891 170 7 0 chr12 99831937 99832084 -21425446 + B1_Mur4 SINE Alu 3 150 0 4 1346 215 310 112 86 chr12 99832181 99832274 -21425256 - B3A SINE B2 -6 192 1 4 1346 293 244 0 128 chr12 99832274 99832368 -21425162 - B4A SINE B4 -210 82 1 4 1346 281 298 58 45 chr12 99832369 99832612 -21424918 - L1MC5 LINE L1 -81 7880 7635 4 1346 21 36 0 0 chr12 99832635 99832663 -21424867 + AT_rich Low_complexity Low_complexity 1 28 0 4 1346 1535 39 32 32 chr12 99832858 99833044 -21424486 + B2_Mm1a SINE B2 2 187 -6 4 1346 243 0 0 0 chr12 99833055 99833082 -21424448 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 1346 2700 132 68 29 chr12 99833173 99833617 -21423913 + RMER6B LTR ERVK 1 461 0 5 1346 201 184 20 0 chr12 99833973 99834022 -21423508 + A-rich Low_complexity Low_complexity 5 54 0 5 1346 1555 175 69 94 chr12 99834513 99834905 -21422625 - ORR1C2 LTR MaLR 0 384 3 5 1346 392 193 10 83 chr12 99835363 99835459 -21422071 - RSINE1 SINE B4 -45 120 32 5 1346 531 0 0 0 chr12 99836005 99836064 -21421466 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1346 396 0 0 0 chr12 99836064 99836107 -21421423 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1346 368 331 106 15 chr12 99836110 99836242 -21421288 - RSINE1 SINE B4 -17 148 5 5 1346 4486 157 41 19 chr12 99836405 99837232 -21420298 + RLTR25A LTR ERVK 1 845 -258 5 1346 263 208 19 0 chr12 99837250 99837303 -21420227 + U7 snRNA snRNA 8 61 -2 5 1346 34 0 0 0 chr12 99837449 99837483 -21420047 + AT_rich Low_complexity Low_complexity 1 34 0 5 1346 904 293 181 33 chr12 99837509 99837822 -21419708 + L1ME3A LINE L1 5339 5727 -446 5 1346 183 42 0 0 chr12 99837822 99837846 -21419684 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 1346 904 293 181 33 chr12 99837846 99838256 -21419274 + L1ME3A LINE L1 5728 6168 -5 5 1346 248 145 0 28 chr12 99838503 99838574 -21418956 + T-rich Low_complexity Low_complexity 5 73 0 5 1346 346 232 0 55 chr12 99839465 99839538 -21417992 + ID4_ SINE ID 1 69 -14 5 1346 354 181 0 0 chr12 99839544 99839649 -21417881 + GA-rich Low_complexity Low_complexity 2 106 0 5 1346 183 156 0 0 chr12 99840796 99840828 -21416702 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 5 1346 417 326 60 57 chr12 99841331 99841666 -21415864 - L1MC LINE L1 -339 5785 5450 5 1346 193 203 47 78 chr12 99841959 99842023 -21415507 - MIRb SINE MIR -201 67 6 5 1346 292 289 65 102 chr12 99842088 99842113 -21415417 + ID SINE ID 68 88 -136 5 1346 463 206 134 0 chr12 99842113 99842210 -21415320 + B1_Mur1 SINE Alu 1 110 -39 5 1346 585 139 194 14 chr12 99842330 99842469 -21415061 - RMER4A LTR ERVK -289 177 14 5 1346 515 227 13 66 chr12 99842471 99842622 -21414908 + MTEb LTR MaLR 237 379 0 5 1346 703 293 6 12 chr12 99842982 99843148 -21414382 - RSINE1 SINE B4 0 165 1 5 1346 1004 276 148 31 chr12 99843257 99843575 -21413955 - MLT1A0 LTR MaLR -10 355 1 5 1346 192 40 0 0 chr12 99844317 99844342 -21413188 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1346 1295 221 41 22 chr12 99844356 99844671 -21412859 + Lx7 LINE L1 7013 7333 -363 5 1346 1931 125 91 0 chr12 99844821 99845117 -21412413 - ORR1A2 LTR MaLR 0 327 5 5 1346 382 338 144 34 chr12 99845578 99845814 -21411716 + MLT1J1 LTR MaLR 109 370 -74 5 1346 405 280 0 10 chr12 99845892 99845993 -21411537 - L1MD3 LINE L1 -420 7575 7476 5 1346 2200 109 18 42 chr12 99846017 99846351 -21411179 - ORR1A3 LTR MaLR 0 326 1 5 1346 911 91 13 59 chr12 99846351 99846503 -21411027 - ORR1A3-int LTR MaLR 0 1963 1819 5 1346 6658 146 19 17 chr12 99846502 99847666 -21409864 - ORR1A3-int LTR MaLR -797 1166 1 5 1346 1904 96 7 24 chr12 99847666 99847954 -21409576 - ORR1A3 LTR MaLR 0 329 47 5 1346 202 234 0 0 chr12 99847961 99848008 -21409522 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1346 250 143 60 20 chr12 99848008 99848058 -21409472 + B1F SINE Alu 88 139 -10 5 1346 243 0 0 0 chr12 99848566 99848593 -21408937 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 1346 213 267 0 0 chr12 99848940 99848985 -21408545 - MIR SINE MIR -57 151 107 5 1346 468 326 113 56 chr12 99849386 99849705 -21407825 - MLT1J LTR MaLR -69 443 107 5 1346 1089 109 114 6 chr12 99849840 99850006 -21407524 + B2_Mm2 SINE B2 2 185 -10 5 1346 3305 44 10 0 chr12 99851275 99851659 -21405871 + RLTR10 LTR ERVK 1 388 -2 5 1346 1653 139 139 9 chr12 99851714 99852030 -21405500 + ORR1B2 LTR MaLR 1 371 -8 5 1346 252 111 0 0 chr12 99852030 99852075 -21405455 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 5 1346 6297 87 2 23 chr12 99852083 99852919 -21404611 + Lx2 LINE L1 6179 6997 0 5 1346 195 232 0 0 chr12 99853602 99853658 -21403872 + CT-rich Low_complexity Low_complexity 6 61 0 5 1346 732 23 0 0 chr12 99854257 99854343 -21403187 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1346 777 225 33 0 chr12 99854345 99854496 -21403034 - B3A SINE B2 -42 156 1 5 1346 252 0 0 0 chr12 99854674 99854702 -21402828 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 5 1346 509 330 81 44 chr12 99855121 99855441 -21402089 - LTR16C LTR ERVL -14 475 144 5 1346 699 254 0 7 chr12 99855463 99855602 -21401928 + B1_Mur1 SINE Alu 4 141 -8 5 1346 679 231 117 51 chr12 99855960 99856156 -21401374 + B3 SINE B2 2 210 -6 5 1346 376 73 330 9 chr12 99856192 99856301 -21401229 - B2_Mm2 SINE B2 -5 190 47 5 1346 1296 114 11 0 chr12 99856344 99856520 -21401010 - B2_Mm1t SINE B2 -14 179 2 5 1346 234 0 0 0 chr12 99856600 99856626 -21400904 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 1346 300 122 102 0 chr12 99856650 99856699 -21400831 - B2_Mm2 SINE B2 -94 101 48 5 1346 1107 113 19 141 chr12 99856710 99856916 -21400614 - B2_Mm2 SINE B2 -14 181 1 5 1346 478 296 24 65 chr12 99857089 99857259 -21400271 + MTEa LTR MaLR 9 171 -188 5 1346 556 249 12 81 chr12 99857291 99857502 -21400028 + MTEa LTR MaLR 187 371 -8 5 1346 198 0 0 0 chr12 99857581 99857603 -21399927 + (TTG)n Simple_repeat Simple_repeat 2 23 0 5 1346 660 227 246 17 chr12 99858052 99858227 -21399303 + B3 SINE B2 2 216 0 5 1346 1200 146 29 80 chr12 99858258 99858496 -21399034 - URR1A DNA MER1_type 0 226 1 5 1346 301 311 94 28 chr12 99858500 99858606 -21398924 + PB1D7 SINE Alu 7 119 -1 5 1346 237 308 22 133 chr12 99858616 99858706 -21398824 + ID4_ SINE ID 2 81 -2 5 1346 1706 42 0 10 chr12 99859078 99859272 -21398258 - B2_Mm1t SINE B2 0 193 2 5 1346 225 231 60 60 chr12 99859542 99859625 -21397905 + RLTR19A LTR ERVK 93 175 -321 5 1346 1139 152 18 4 chr12 99859760 99859959 -21397571 + B3 SINE B2 1 198 0 5 1346 378 279 264 0 chr12 99859990 99860119 -21397411 + RSINE1 SINE B4 3 165 0 5 1346 616 235 89 58 chr12 99860526 99860716 -21396814 + B3A SINE B2 3 198 0 5 1346 827 200 31 12 chr12 99861414 99861576 -21395954 - Lx7 LINE L1 0 7696 7532 5 1346 1060 61 0 64 chr12 99861580 99861647 -21395883 + B1_Mm SINE Alu 1 64 -83 5 1346 2002 119 9 59 chr12 99861647 99861986 -21395544 + RLTRETN_Mm LTR ERVK 1 322 0 5 1346 1060 61 0 64 chr12 99861986 99862075 -21395455 + B1_Mm SINE Alu 65 147 0 5 1346 245 52 16 79 chr12 99862075 99862138 -21395392 + (CAAAAA)n Simple_repeat Simple_repeat 6 64 0 5 1346 264 244 0 113 chr12 99862207 99862304 -21395226 - Lx6 LINE L1 -276 7184 7099 5 1346 714 280 61 12 chr12 99862572 99862780 -21394750 - B3A SINE B2 0 198 1 5 1346 6344 49 61 1 chr12 99862967 99863436 -21394094 - L1_Mus2 LINE L1 -1 6565 6068 5 1346 198 0 0 0 chr12 99863436 99863458 -21394072 + (TTCC)n Simple_repeat Simple_repeat 2 23 0 5 1346 6344 49 61 1 chr12 99863458 99863745 -21393785 - L1_Mus2 LINE L1 -499 6067 5764 5 1346 1113 200 90 9 chr12 99864010 99864232 -21393298 - MTD LTR MaLR 0 419 180 5 1346 1524 157 199 47 chr12 99864238 99864732 -21392798 - RMER6C LTR ERVK -4 686 1 5 1346 405 0 0 0 chr12 99864792 99864837 -21392693 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1346 557 339 101 26 chr12 99864926 99864943 -21392587 - MT2A LTR ERVL -96 437 420 5 1346 198 0 0 0 chr12 99864943 99864965 -21392565 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 5 1346 557 339 101 26 chr12 99864965 99865253 -21392277 - MT2A LTR ERVL -114 419 110 5 1346 384 22 0 0 chr12 99865262 99865307 -21392223 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 5 1346 929 92 134 0 chr12 99865307 99865449 -21392081 - B2_Mm2 SINE B2 -34 161 1 5 1346 460 234 65 52 chr12 99865594 99865747 -21391783 + MER20 DNA MER1_type 1 155 -64 5 1346 293 208 11 125 chr12 99866102 99866190 -21391340 + B4A SINE B4 27 105 -60 5 1346 234 312 42 21 chr12 99866816 99866911 -21390619 + MIRb SINE MIR 126 222 -46 5 1346 210 71 0 0 chr12 99866934 99866962 -21390568 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 5 1346 311 303 101 0 chr12 99866980 99867079 -21390451 - MER5A1 DNA MER1_type -55 111 3 5 1346 241 289 81 35 chr12 99867959 99868045 -21389485 + MIR3 SINE MIR 99 188 -20 5 1346 250 260 121 30 chr12 99868438 99868537 -21388993 - LTR41B LTR ERVL -3 755 648 5 1346 597 250 23 46 chr12 99868992 99869122 -21388408 + PB1 SINE Alu 1 127 0 5 1346 255 193 100 78 chr12 99869527 99869617 -21387913 - MTC LTR MaLR -320 99 8 5 1346 673 295 41 57 chr12 99869626 99869820 -21387710 - B4A SINE B4 -100 192 2 5 1346 797 218 14 0 chr12 99869911 99870053 -21387477 - B1_Mur1 SINE Alu -5 144 1 5 1346 23 33 0 0 chr12 99870570 99870600 -21386930 + AT_rich Low_complexity Low_complexity 1 30 0 5 1346 320 23 0 43 chr12 99870769 99870815 -21386715 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 1346 563 252 37 0 chr12 99870830 99870965 -21386565 + B1F SINE Alu 10 149 0 5 1346 235 203 152 30 chr12 99870984 99871050 -21386480 + ID2 SINE ID 4 77 -6 5 1346 315 0 0 0 chr12 99871057 99871092 -21386438 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1346 664 252 89 92 chr12 99871479 99871772 -21385758 + B4A SINE B4 1 292 0 5 1346 619 290 8 119 chr12 99872861 99872950 -21384580 - B4A SINE B4 0 292 216 5 1346 1646 47 0 30 chr12 99872950 99873149 -21384381 + B2_Mm1a SINE B2 1 193 0 5 1346 619 290 8 119 chr12 99873149 99873310 -21384220 - B4A SINE B4 -77 215 70 5 1346 251 325 13 0 chr12 99873308 99873385 -21384145 - PB1D10 SINE Alu -3 114 37 5 1346 545 327 106 11 chr12 99873653 99873928 -21383602 + MER58B DNA MER1_type 39 339 -2 5 1346 250 254 134 0 chr12 99873966 99874100 -21383430 - L1ME1 LINE L1 -211 6228 6077 6 1346 879 225 108 4 chr12 99874114 99874373 -21383157 - B4 SINE B4 -5 287 2 6 1346 614 216 30 0 chr12 99874412 99874546 -21382984 + B1_Mus2 SINE Alu 10 147 0 6 1346 242 279 126 69 chr12 99874553 99874784 -21382746 - L1ME1 LINE L1 -361 6063 5820 6 1346 517 327 128 0 chr12 99875075 99875442 -21382088 - L1ME1 LINE L1 -1031 5375 4962 6 1346 325 244 88 8 chr12 99875499 99875660 -21381870 - L1ME1 LINE L1 -5057 1352 1120 6 1346 27 49 0 0 chr12 99875725 99875766 -21381764 + AT_rich Low_complexity Low_complexity 1 41 0 6 1346 424 277 89 118 chr12 99875862 99876221 -21381309 - L1MB4 LINE L1 -11 6169 5821 6 1346 417 299 37 37 chr12 99876221 99876384 -21381146 - RSINE1 SINE B4 0 165 3 6 1346 424 277 89 118 chr12 99876384 99876441 -21381089 - L1MB4 LINE L1 -360 5820 5765 6 1346 235 339 57 0 chr12 99876497 99876621 -21380909 - L1MB4 LINE L1 -532 5651 5521 6 168 865 166 72 0 chr12 99876760 99876899 -21380631 + B1_Mur4 SINE Alu 1 149 -1 6 1347 207 0 0 0 chr12 99876944 99876967 -21380563 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1347 995 269 122 123 chr12 99876967 99878348 -21379182 + L1M3 LINE L1 2147 3526 -2614 6 1347 8195 99 27 19 chr12 99878410 99879822 -21377708 + L1_Mus3 LINE L1 5531 6898 -83 6 1347 41 21 0 0 chr12 99879828 99879876 -21377654 + AT_rich Low_complexity Low_complexity 1 48 0 6 1347 689 245 97 12 chr12 99879896 99880061 -21377469 - B3A SINE B2 -17 181 3 6 1347 320 289 60 56 chr12 99880061 99880271 -21377259 - MER2 DNA MER2_type -119 226 1 6 1347 1109 281 148 38 chr12 99880450 99881160 -21376370 - L1MA9 LINE L1 -46 6266 5479 6 1347 302 250 22 134 chr12 99881162 99881183 -21376347 - RSINE1 SINE B4 0 165 144 6 1347 195 129 0 0 chr12 99881183 99881214 -21376316 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1347 302 250 22 134 chr12 99881214 99881326 -21376204 - RSINE1 SINE B4 -22 143 47 6 1347 285 284 45 73 chr12 99881396 99881506 -21376024 + B4A SINE B4 186 292 0 6 1347 343 348 170 34 chr12 99881546 99881957 -21375573 - L2a LINE L2 -15 3411 2945 6 1347 580 308 168 36 chr12 99881972 99882250 -21375280 - L2a LINE L2 -522 2897 2566 6 1347 854 60 8 0 chr12 99882250 99882367 -21375163 + (GGAGA)n Simple_repeat Simple_repeat 2 119 0 6 1347 580 308 168 36 chr12 99882367 99882506 -21375024 - L2a LINE L2 -854 2565 2426 6 1347 356 293 211 0 chr12 99882512 99882635 -21374895 + RSINE1 SINE B4 2 150 -15 6 1347 259 191 202 0 chr12 99882679 99882763 -21374767 - L2a LINE L2 -1010 2409 2309 6 1347 775 194 172 32 chr12 99883170 99883356 -21374174 - B3 SINE B2 -4 212 1 6 1347 639 210 231 43 chr12 99883470 99883704 -21373826 - B4 SINE B4 -12 280 3 6 1347 4710 166 85 43 chr12 99883792 99884769 -21372761 + Lx5 LINE L1 6030 7047 -3 6 1347 444 333 62 0 chr12 99884964 99885093 -21372437 + B1F1 SINE Alu 2 138 -11 6 1347 448 285 62 49 chr12 99885086 99885230 -21372300 + RSINE1 SINE B4 15 160 -5 6 1347 3605 136 63 7 chr12 99885230 99885833 -21371697 - Lx5 LINE L1 -1043 6007 5361 6 1347 1270 68 0 0 chr12 99885833 99885980 -21371550 - B1_Mm SINE Alu 0 147 1 6 1347 3605 146 32 13 chr12 99885980 99886073 -21371457 - Lx5 LINE L1 -517 5360 5268 6 1347 568 198 49 16 chr12 99887286 99887409 -21370121 - B1_Mur2 SINE Alu 0 149 23 6 1347 3476 41 5 2 chr12 99887432 99887827 -21369703 + MTA_Mm LTR MaLR 1 396 0 6 1347 2515 66 6 19 chr12 99887871 99888195 -21369335 + L1_Mus3 LINE L1 6319 6638 0 6 1347 245 191 28 56 chr12 99888720 99888792 -21368738 + GA-rich Low_complexity Low_complexity 5 74 0 6 1347 738 278 29 5 chr12 99889482 99889692 -21367838 - B3 SINE B2 0 216 2 6 1347 25 99 0 0 chr12 99889781 99889862 -21367668 + AT_rich Low_complexity Low_complexity 1 81 0 6 1347 1860 227 30 7 chr12 99890009 99890511 -21367019 - Lx5 LINE L1 -9 7049 6492 6 1347 198 0 0 0 chr12 99890541 99890563 -21366967 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 6 1347 545 68 0 0 chr12 99890563 99890637 -21366893 - B1_Mus2 SINE Alu -71 76 3 6 1347 394 182 0 72 chr12 99890572 99890655 -21366875 - B4 SINE B4 -140 152 76 6 1347 15043 167 193 14 chr12 99890656 99891947 -21365583 - L1_Mur2 LINE L1 -536 5344 3460 6 1347 195 42 0 0 chr12 99891947 99891971 -21365559 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 6 1347 15043 167 193 14 chr12 99891971 99894121 -21363409 - L1_Mur2 LINE L1 -2421 3459 1267 6 1347 1619 27 27 0 chr12 99894121 99894309 -21363221 - B2_Mm1t SINE B2 0 193 1 6 1347 15043 141 256 41 chr12 99894309 99894410 -21363120 - L1_Mur2 LINE L1 -5813 1273 1159 6 1347 1087 88 0 7 chr12 99894410 99894559 -21362971 - B1_Mus1 SINE Alu 0 148 1 6 1347 1367 141 256 41 chr12 99894559 99894734 -21362796 - L1_Mur2 LINE L1 -5928 1158 905 6 1347 231 254 99 0 chr12 99897268 99897339 -21360191 + U6 snRNA snRNA 2 79 -28 6 1347 335 336 76 0 chr12 99898071 99898202 -21359328 + B1F2 SINE Alu 1 141 -8 6 1347 260 253 36 48 chr12 99898209 99898292 -21359238 + ID4_ SINE ID 2 83 0 6 1347 297 308 10 62 chr12 99898611 99898708 -21358822 + RSINE1 SINE B4 74 165 0 6 1347 568 278 51 23 chr12 99898936 99899021 -21358509 + ID_B1 SINE B4 2 92 -132 6 1347 573 228 233 6 chr12 99899021 99899193 -21358337 - B3 SINE B2 -5 211 1 6 1347 568 278 51 23 chr12 99899193 99899324 -21358206 + ID_B1 SINE B4 93 224 0 6 1347 319 200 57 0 chr12 99899607 99899677 -21357853 - 5S rRNA rRNA -31 90 17 6 1347 532 194 192 8 chr12 99899679 99899804 -21357726 + B1_Mur2 SINE Alu 1 148 -1 6 1347 377 245 63 11 chr12 99900301 99900396 -21357134 + PB1D7 SINE Alu 9 108 -12 6 1347 462 310 37 31 chr12 99900654 99900817 -21356713 + RSINE1 SINE B4 2 165 0 6 1347 33 0 0 0 chr12 99902689 99902722 -21354808 + AT_rich Low_complexity Low_complexity 1 33 0 6 1347 615 219 107 20 chr12 99902848 99902997 -21354533 - RSINE1 SINE B4 0 165 4 6 1347 420 264 79 79 chr12 99903391 99903683 -21353847 + B4A SINE B4 1 292 0 6 1347 9022 65 10 1 chr12 99903710 99905600 -21351930 - L1_Mus1 LINE L1 -1 6566 4660 6 1347 311 277 35 18 chr12 99905631 99905745 -21351785 + L1MB2 LINE L1 6029 6144 -27 6 1347 336 64 0 0 chr12 99905942 99905989 -21351541 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1347 310 136 309 0 chr12 99906466 99906547 -21350983 + PB1D9 SINE Alu 2 107 -13 6 1347 512 289 82 107 chr12 99907986 99908304 -21349226 - MLT1F2 LTR MaLR -16 544 235 6 1347 840 227 64 5 chr12 99908859 99909063 -21348467 - ID_B1 SINE B4 -8 216 1 6 1347 327 78 0 0 chr12 99909297 99909348 -21348182 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1347 432 0 0 0 chr12 99910351 99910399 -21347131 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1347 378 0 0 0 chr12 99910399 99910440 -21347090 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1347 1112 269 110 29 chr12 99910446 99910929 -21346601 - Lx9 LINE L1 -272 7372 6851 6 1347 999 158 172 8 chr12 99911065 99911311 -21346219 + MTD LTR MaLR 1 276 -145 6 1347 1014 260 75 27 chr12 99911354 99911686 -21345844 - Lx9 LINE L1 -882 6762 6415 6 1347 33 73 0 0 chr12 99911727 99911795 -21345735 + AT_rich Low_complexity Low_complexity 1 68 0 6 1347 714 178 150 86 chr12 99911895 99912129 -21345401 + ORR1D1 LTR MaLR 1 249 -125 6 1347 261 188 0 0 chr12 99912140 99912188 -21345342 - ORR1D2 LTR MaLR -4 366 319 6 1347 1241 167 122 7 chr12 99912184 99912455 -21345075 + ORR1D1 LTR MaLR 69 370 -4 6 1347 529 214 76 38 chr12 99913813 99913944 -21343586 + B1_Mur1 SINE Alu 4 139 -10 6 1347 259 232 50 10 chr12 99913949 99914049 -21343481 + (TA)n Simple_repeat Simple_repeat 1 104 0 6 1347 247 95 84 19 chr12 99914077 99914184 -21343346 + (TA)n Simple_repeat Simple_repeat 2 115 0 6 1347 557 242 32 32 chr12 99917884 99918042 -21339488 + RSINE1 SINE B4 6 163 -2 6 1347 254 29 29 0 chr12 99918042 99918077 -21339453 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1347 531 240 16 0 chr12 99919780 99919905 -21337625 + B1_Mur1 SINE Alu 23 149 0 6 1347 435 173 0 0 chr12 99919915 99919996 -21337534 + (TAGG)n Simple_repeat Simple_repeat 2 82 0 6 1347 503 248 80 7 chr12 99922189 99922327 -21335203 - B1_Mur1 SINE Alu 0 149 2 6 1347 252 122 0 0 chr12 99922336 99922377 -21335153 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1347 665 157 12 93 chr12 99922377 99922539 -21334991 - B1_Mur4 SINE Alu 0 150 2 6 1347 1209 41 0 13 chr12 99922583 99922732 -21334798 + B1_Mus1 SINE Alu 2 148 0 6 1347 216 0 0 0 chr12 99922732 99922756 -21334774 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1347 594 289 88 13 chr12 99923240 99923468 -21334062 - B4A SINE B4 -47 245 1 6 1347 338 279 23 0 chr12 99925542 99925628 -21331902 + MIR SINE MIR 57 144 -118 6 1347 1201 48 7 0 chr12 99928915 99929061 -21328469 - B1_Mus2 SINE Alu 0 147 1 6 1347 350 262 0 0 chr12 99930846 99930926 -21326604 + PB1D10 SINE Alu 11 90 -27 6 1347 424 254 72 29 chr12 99931903 99932041 -21325489 + B1F SINE Alu 4 147 -2 6 1347 267 103 0 0 chr12 99932164 99932203 -21325327 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1347 740 191 37 0 chr12 99932957 99933093 -21324437 + B1_Mus2 SINE Alu 1 141 -6 6 1347 207 0 0 0 chr12 99933110 99933133 -21324397 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1347 243 114 0 0 chr12 99933367 99933411 -21324119 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1347 438 291 103 32 chr12 99933700 99933885 -21323645 - MIRb SINE MIR -44 224 27 6 1347 360 88 0 0 chr12 99933901 99933958 -21323572 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1347 248 0 31 0 chr12 99933958 99933990 -21323540 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1347 395 38 19 0 chr12 99936010 99936063 -21321467 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1347 581 258 0 0 chr12 99936106 99936234 -21321296 + B1F SINE Alu 5 132 -17 6 1347 525 203 40 24 chr12 99936590 99936716 -21320814 + B1_Mur1 SINE Alu 3 130 -19 6 1347 239 219 30 30 chr12 99936723 99936789 -21320741 + B4 SINE B4 7 72 -220 6 1347 274 205 32 0 chr12 99936734 99936804 -21320726 + ID2 SINE ID 16 90 -62 6 1347 1354 51 102 0 chr12 99937754 99937930 -21319600 + B2_Mm2 SINE B2 1 194 -1 6 1347 25 83 0 0 chr12 99938337 99938397 -21319133 + AT_rich Low_complexity Low_complexity 1 60 0 6 1347 329 141 30 10 chr12 99938431 99938531 -21318999 + (TA)n Simple_repeat Simple_repeat 1 102 0 6 1347 510 232 47 47 chr12 99938536 99938685 -21318845 + MTEa LTR MaLR 231 379 0 7 1347 1242 41 0 0 chr12 99938853 99938999 -21318531 + B1_Mm SINE Alu 2 147 0 7 1347 225 83 0 0 chr12 99939001 99939037 -21318493 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1347 1110 68 0 0 chr12 99939096 99939229 -21318301 + B1_Mus1 SINE Alu 2 134 -14 7 1347 216 224 17 0 chr12 99940214 99940272 -21317258 + A-rich Low_complexity Low_complexity 2 60 0 7 1347 182 414 62 0 chr12 99940335 99940463 -21317067 + MIRb SINE MIR 92 227 -41 7 1347 940 25 8 0 chr12 99940625 99940747 -21316783 + B1_Mus2 SINE Alu 25 147 0 7 1347 1449 251 148 17 chr12 99940905 99941508 -21316022 + Lx8 LINE L1 6431 7112 -361 7 1347 660 287 90 14 chr12 99941519 99941798 -21315732 + Lx8 LINE L1 7172 7471 -2 7 1347 622 245 28 0 chr12 99942672 99942815 -21314715 - RSINE1 SINE B4 -4 161 15 7 1347 1337 105 11 5 chr12 99942843 99943034 -21314496 + B2_Mm1a SINE B2 2 193 0 7 1347 1090 166 54 29 chr12 99943758 99943963 -21313567 + B3 SINE B2 1 210 -6 7 1347 645 49 0 0 chr12 99944199 99944280 -21313250 + (TCC)n Simple_repeat Simple_repeat 1 81 0 7 1347 654 13 0 0 chr12 99944598 99944673 -21312857 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 7 1347 6900 72 48 29 chr12 99945081 99946088 -21311442 + Lx3_Mus LINE L1 5976 7001 -8 7 1347 263 301 0 52 chr12 99946417 99946494 -21311036 + ID4_ SINE ID 2 74 -9 7 1347 399 98 0 0 chr12 99946506 99946567 -21310963 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1347 632 67 0 11 chr12 99946591 99946682 -21310848 + (GGGA)n Simple_repeat Simple_repeat 2 91 0 7 1347 197 138 0 0 chr12 99946879 99946908 -21310622 + MIR SINE MIR 210 238 -24 7 1347 596 199 94 14 chr12 99948239 99948377 -21309153 - B1_Mur1 SINE Alu 0 149 1 7 1347 477 0 0 0 chr12 99948717 99948770 -21308760 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 7 1347 263 235 59 0 chr12 99949337 99949405 -21308125 + ID4 SINE ID 1 72 -11 7 1347 218 363 52 7 chr12 99949735 99949871 -21307659 + MIRb SINE MIR 37 178 -90 7 1347 180 320 117 0 chr12 99950398 99950526 -21307004 + L4 LINE RTE 1321 1463 -566 7 1347 200 316 26 0 chr12 99950663 99950739 -21306791 + L4 LINE RTE 1637 1714 -315 7 1347 23 0 0 0 chr12 99950874 99950897 -21306633 + AT_rich Low_complexity Low_complexity 1 23 0 7 1347 447 290 21 42 chr12 99953664 99953808 -21303722 - RSINE1 SINE B4 -11 154 14 7 1347 459 250 33 79 chr12 99953983 99954019 -21303511 + B4 SINE B4 60 88 -204 7 1347 905 41 0 24 chr12 99954019 99954145 -21303385 + B1_Mus1 SINE Alu 2 124 -24 7 1347 688 22 22 0 chr12 99954156 99954246 -21303284 + (TC)n Simple_repeat Simple_repeat 1 92 0 7 1347 313 268 39 58 chr12 99954346 99954449 -21303081 + PB1D10 SINE Alu 1 101 -16 7 1347 180 0 0 0 chr12 99954451 99954471 -21303059 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1347 393 308 23 0 chr12 99954696 99954826 -21302704 + MER3 DNA MER1_type 1 133 -76 7 1347 1103 75 0 39 chr12 99954923 99955076 -21302454 + B1_Mus1 SINE Alu 2 148 0 7 1347 344 275 71 14 chr12 99955141 99955281 -21302249 + B1F SINE Alu 2 149 0 7 1347 386 219 165 10 chr12 99955311 99955408 -21302122 + PB1D7 SINE Alu 1 112 -8 7 1347 1082 97 0 0 chr12 99955424 99955569 -21301961 - B1_Mus1 SINE Alu -2 146 2 7 1347 811 224 88 5 chr12 99955588 99955781 -21301749 + B3 SINE B2 2 210 -6 7 1347 402 254 27 0 chr12 99956274 99956384 -21301146 + B1F SINE Alu 19 131 -18 7 1347 26 30 0 0 chr12 99956769 99956802 -21300728 + AT_rich Low_complexity Low_complexity 1 33 0 7 1347 457 245 36 9 chr12 99957103 99957214 -21300316 - B1F SINE Alu 0 149 36 7 1347 943 159 72 67 chr12 99957305 99957514 -21300016 + B3 SINE B2 2 211 -5 7 1347 838 50 0 62 chr12 99957527 99957656 -21299874 - B1_Mus1 SINE Alu 0 148 28 7 1347 290 174 168 84 chr12 99957694 99957801 -21299729 + PB1D9 SINE Alu 1 116 -4 7 1347 525 218 117 29 chr12 99957931 99958068 -21299462 + B1F SINE Alu 1 149 0 7 1347 210 233 0 0 chr12 99959921 99959964 -21297566 + ID2 SINE ID 2 44 -39 7 1347 224 333 42 0 chr12 99960010 99960082 -21297448 + ID4 SINE ID 2 76 -7 7 1347 834 209 19 65 chr12 99960696 99960911 -21296619 - B3 SINE B2 -3 213 9 7 1347 329 246 89 67 chr12 99960953 99960965 -21296565 + B1F1 SINE Alu 12 81 -68 7 1347 465 272 53 0 chr12 99960965 99961079 -21296451 + ID_B1 SINE B4 98 217 -7 7 1347 366 310 61 55 chr12 99961088 99961252 -21296278 + RSINE1 SINE B4 1 165 0 7 1347 1303 14 0 0 chr12 99961271 99961418 -21296112 + B1_Mus2 SINE Alu 1 147 0 7 1347 288 237 26 0 chr12 99962094 99962170 -21295360 + PB1D10 SINE Alu 33 110 -7 7 1347 375 216 0 22 chr12 99962528 99962618 -21294912 + PB1D10 SINE Alu 27 114 -3 7 1347 367 255 52 31 chr12 99962620 99962717 -21294813 + RSINE1 SINE B4 3 101 -64 7 1347 1093 59 22 0 chr12 99962763 99962899 -21294631 + B1_Mm SINE Alu 1 139 -8 7 1347 369 205 82 20 chr12 99962951 99963050 -21294480 + B1F SINE Alu 25 141 -8 7 1347 247 184 26 13 chr12 99963500 99963577 -21293953 + CT-rich Low_complexity Low_complexity 2 79 0 7 1347 262 302 79 50 chr12 99963618 99963719 -21293811 + B1F SINE Alu 38 141 -8 7 1347 886 220 30 15 chr12 99963736 99963939 -21293591 + B3 SINE B2 5 210 -6 7 1347 183 80 0 0 chr12 99963965 99963990 -21293540 + (ATGGTG)n Simple_repeat Simple_repeat 2 26 0 7 1347 551 300 40 26 chr12 99964128 99964354 -21293176 + L1MA6 LINE L1 6048 6276 -24 7 1347 621 266 87 5 chr12 99964670 99964855 -21292675 - ID_B1 SINE B4 -13 211 12 7 1347 215 288 96 0 chr12 99965065 99965138 -21292392 + B4 SINE B4 2 81 -211 7 1347 253 286 10 52 chr12 99965750 99965846 -21291684 + RMER15 LTR ERVL 379 470 -105 7 1347 797 247 6 0 chr12 99965875 99966045 -21291485 + B3 SINE B2 45 215 -1 7 1347 246 279 143 9 chr12 99966081 99966193 -21291337 + PB1 SINE Alu 1 127 0 7 1347 1284 20 0 0 chr12 99966224 99966371 -21291159 + B1_Mm SINE Alu 1 147 0 7 1347 277 125 0 35 chr12 99966424 99966482 -21291048 + GA-rich Low_complexity Low_complexity 1 56 0 7 1347 203 297 178 0 chr12 99966644 99966745 -21290785 - L2a LINE L2 -4 3422 3304 7 1347 231 0 77 0 chr12 99966814 99966853 -21290677 + (CAA)n Simple_repeat Simple_repeat 2 43 0 7 1347 526 175 18 0 chr12 99967122 99967236 -21290294 + (CA)n Simple_repeat Simple_repeat 2 117 0 7 1347 356 202 50 11 chr12 99967290 99967390 -21290140 + B1F2 SINE Alu 9 115 -2 7 1347 556 25 38 0 chr12 99967684 99967763 -21289767 + L1Md_F2 LINE L1 6501 6582 0 7 1347 243 0 0 0 chr12 99967893 99967920 -21289610 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 7 1347 1089 67 0 0 chr12 99967920 99968054 -21289476 - B1_Mus1 SINE Alu -13 135 2 7 1347 214 170 32 159 chr12 99968233 99968263 -21289267 - PB1 SINE Alu -37 90 64 7 1347 2690 146 52 0 chr12 99968263 99968708 -21288822 + Lx2B LINE L1 6532 6999 -1 7 1347 214 170 32 159 chr12 99968708 99968740 -21288790 - PB1 SINE Alu -64 63 36 7 1347 279 202 159 28 chr12 99969275 99969382 -21288148 + PB1 SINE Alu 3 123 -4 7 1347 354 80 0 0 chr12 99969391 99969441 -21288089 + (GGA)n Simple_repeat Simple_repeat 3 52 0 7 1347 675 213 192 18 chr12 99969529 99969696 -21287834 - B3 SINE B2 -7 209 14 7 1347 276 364 14 14 chr12 99971136 99971281 -21286249 - MIR SINE MIR -82 180 36 7 1347 187 273 0 0 chr12 99976858 99976913 -21280617 + L2a LINE L2 3368 3422 -4 7 1347 537 288 30 12 chr12 99977404 99977569 -21279961 + B3A SINE B2 4 171 -27 7 1347 327 65 0 0 chr12 99977574 99977620 -21279910 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1347 369 0 0 0 chr12 99977661 99977702 -21279828 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1347 367 288 103 81 chr12 99977802 99977938 -21279592 - B3A SINE B2 -15 183 45 7 1347 1183 68 0 0 chr12 99977969 99978116 -21279414 - B1_Mus1 SINE Alu 0 148 2 7 1347 673 202 0 8 chr12 99978318 99978443 -21279087 + B3 SINE B2 1 124 -92 7 1347 1439 63 26 16 chr12 99978603 99978796 -21278734 + B2_Mm2 SINE B2 1 195 0 7 1347 408 289 16 62 chr12 99978877 99979006 -21278524 - RSINE1 SINE B4 -21 144 22 7 1347 378 0 0 0 chr12 99979382 99979424 -21278106 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1347 1326 96 11 0 chr12 99979975 99980152 -21277378 + B2_Mm1t SINE B2 1 179 -14 7 1347 305 106 409 0 chr12 99980238 99980331 -21277199 + B2_Mm2 SINE B2 47 177 -18 7 1347 267 31 0 0 chr12 99980455 99980487 -21277043 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1347 912 253 76 4 chr12 99980488 99980738 -21276792 - B4A SINE B4 -23 269 2 7 1347 363 329 97 0 chr12 99981018 99981234 -21276296 - MIR SINE MIR -5 257 21 7 1347 687 53 263 9 chr12 99981533 99981640 -21275890 + B1_Mus1 SINE Alu 1 137 -11 7 1347 321 47 0 0 chr12 99981640 99981683 -21275847 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1347 359 363 17 0 chr12 99982056 99982222 -21275308 + MLT1E LTR MaLR 474 648 -32 7 1347 2348 187 132 5 chr12 99982307 99982870 -21274660 + RMER1B Other Other 6 1056 -10 7 1347 236 282 14 14 chr12 99982890 99982962 -21274568 + PB1D10 SINE Alu 5 76 -41 7 1347 344 216 51 10 chr12 99982987 99983085 -21274445 + HAL1-2a_MD LINE L1 2402 2503 -521 7 1347 626 123 19 0 chr12 99984583 99984689 -21272841 + B1_Mur3 SINE Alu 32 139 -10 8 1347 234 0 0 0 chr12 99984689 99984715 -21272815 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 8 1347 290 115 19 0 chr12 99985188 99985240 -21272290 + (CGG)n Simple_repeat Simple_repeat 1 53 0 8 1347 180 77 0 0 chr12 99985535 99985561 -21271969 + (CGG)n Simple_repeat Simple_repeat 2 27 0 8 1347 207 0 0 0 chr12 99986152 99986175 -21271355 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1347 697 135 31 113 chr12 99986599 99986758 -21270772 + B1_Mur4 SINE Alu 5 150 0 8 1347 1132 228 164 9 chr12 99986897 99987233 -21270297 + MTD LTR MaLR 18 405 -14 8 1347 1028 293 129 29 chr12 99987243 99987872 -21269658 + Charlie1a DNA MER1_type 550 1241 -214 8 1347 362 317 16 16 chr12 99988768 99988893 -21268637 - B1F SINE Alu -7 142 18 8 1347 911 144 204 11 chr12 99989950 99990126 -21267404 - B3 SINE B2 -6 210 1 8 1347 225 0 0 0 chr12 99990637 99990662 -21266868 + (TA)n Simple_repeat Simple_repeat 1 25 0 8 1347 22 0 0 0 chr12 99991581 99991603 -21265927 + AT_rich Low_complexity Low_complexity 1 22 0 8 1347 1131 56 28 0 chr12 99992017 99992159 -21265371 - B1_Mus2 SINE Alu 0 147 2 8 1347 1176 61 0 0 chr12 99992546 99992694 -21264836 - B1_Mus1 SINE Alu 0 148 1 8 1347 23 0 0 0 chr12 99992705 99992728 -21264802 + AT_rich Low_complexity Low_complexity 1 23 0 8 1347 631 269 42 88 chr12 99992773 99993013 -21264517 - B4A SINE B4 0 292 64 8 1347 234 0 0 0 chr12 99993191 99993217 -21264313 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1347 202 194 0 0 chr12 99993589 99993625 -21263905 + GA-rich Low_complexity Low_complexity 2 37 0 8 1347 198 0 0 0 chr12 99993763 99993785 -21263745 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 8 1347 433 180 51 12 chr12 99993891 99993991 -21263539 + PB1D10 SINE Alu 5 110 -7 8 1347 524 296 57 6 chr12 99994894 99995071 -21262459 + ID_B1 SINE B4 19 204 -20 8 1347 357 330 57 80 chr12 99995528 99995900 -21261630 - ORR1E LTR MaLR 0 370 13 8 1347 24 0 0 0 chr12 99995900 99995924 -21261606 + AT_rich Low_complexity Low_complexity 1 24 0 8 1347 821 233 68 11 chr12 99995924 99996115 -21261415 - B3 SINE B2 -14 202 1 8 1347 22 56 0 0 chr12 99996180 99996216 -21261314 + AT_rich Low_complexity Low_complexity 1 36 0 8 1347 799 251 60 0 chr12 99996255 99996454 -21261076 - B3 SINE B2 -4 212 2 8 1347 430 211 67 0 chr12 99996454 99996544 -21260986 + PB1D9 SINE Alu 13 108 -12 8 1347 270 0 0 0 chr12 99996545 99996575 -21260955 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 1347 369 126 14 0 chr12 99997565 99997630 -21259900 - B2_Mm2 SINE B2 -82 116 46 8 1347 949 92 91 7 chr12 99997677 99997831 -21259699 - B2_Mm2 SINE B2 -27 168 2 8 1347 247 254 0 15 chr12 99998976 99999044 -21258486 - ID4_ SINE ID -1 82 16 8 1347 1217 48 0 13 chr12 99999390 99999539 -21257991 - B1_Mus1 SINE Alu 0 148 2 8 1347 493 200 9 52 chr12 99999878 99999994 -21257536 - B3 SINE B2 -68 148 38 8 1347 664 191 66 7 chr12 100000592 100000729 -21256801 - B1_Mur2 SINE Alu 0 149 5 1 1347 407 225 66 57 chr12 100001024 100001199 -21256331 + B3 SINE B2 2 216 0 2 1347 434 351 69 0 chr12 100001230 100001361 -21256169 + ID_B1 SINE B4 78 217 -7 3 1347 273 75 0 0 chr12 100001455 100001495 -21256035 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1347 240 35 0 0 chr12 100001535 100001564 -21255966 + (GTTTG)n Simple_repeat Simple_repeat 5 33 0 5 1347 313 262 125 0 chr12 100001565 100001645 -21255885 - PB1D10 SINE Alu -7 110 21 6 1347 333 0 0 0 chr12 100001720 100001757 -21255773 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 7 1347 1223 69 6 0 chr12 100001757 100001916 -21255614 - B2_Mm1t SINE B2 -33 160 1 8 1347 221 314 124 34 chr12 100002270 100002359 -21255171 - B3 SINE B2 -101 115 19 9 1347 379 326 34 47 chr12 100002687 100002835 -21254695 - ID_B1 SINE B4 -2 222 77 1 1347 401 220 63 18 chr12 100002858 100002969 -21254561 - MER47B DNA MER2_type 0 418 303 1 1347 481 278 152 64 chr12 100003031 100003392 -21254138 - Lx8 LINE L1 -35 7438 7046 1 1347 246 267 0 0 chr12 100004242 100004287 -21253243 - Tigger5 DNA MER2_type 0 2406 2362 1 1347 639 204 13 52 chr12 100004309 100004464 -21253066 - B1_Mur2 SINE Alu 0 149 1 1 1347 378 317 69 106 chr12 100004704 100005007 -21252523 - MER47B DNA MER2_type -117 301 10 1 1347 335 60 20 0 chr12 100005224 100005274 -21252256 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1 1347 243 0 0 0 chr12 100005970 100005997 -21251533 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1347 877 165 0 0 chr12 100005997 100006130 -21251400 - B1_Mus1 SINE Alu -15 133 1 1 1347 327 275 205 0 chr12 100006192 100006317 -21251213 - ID_B1 SINE B4 -56 236 84 1 1347 220 242 226 0 chr12 100006366 100006428 -21251102 + B4A SINE B4 86 161 -131 1 1347 478 300 143 22 chr12 100006582 100006896 -21250634 - Lx8 LINE L1 -1 7472 7121 2 1347 1164 287 113 52 chr12 100006923 100007191 -21250339 - Lx8 LINE L1 -839 6634 6336 2 1347 333 0 0 0 chr12 100007191 100007228 -21250302 + (TGG)n Simple_repeat Simple_repeat 3 39 0 2 1347 1164 287 113 52 chr12 100007228 100007728 -21249802 - Lx8 LINE L1 -1138 6335 5819 2 1347 339 25 0 0 chr12 100007741 100007781 -21249749 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 168 1347 63 6 17 chr12 100007785 100007963 -21249567 - B2_Mm2 SINE B2 -18 177 2 2 1348 515 308 110 40 chr12 100007963 100008413 -21249117 + L1M4 LINE L1 4508 4976 -1170 2 1348 225 0 0 0 chr12 100008413 100008438 -21249092 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1348 515 308 110 40 chr12 100008438 100008616 -21248914 + L1M4 LINE L1 4977 5180 -966 2 1348 206 121 0 0 chr12 100008625 100008658 -21248872 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2 1348 299 295 13 0 chr12 100008804 100008882 -21248648 - ID4_ SINE ID -2 81 3 2 1348 230 279 21 75 chr12 100010000 100010093 -21247437 - BC1_Mm scRNA scRNA -61 91 4 2 1348 467 159 72 36 chr12 100010105 100010216 -21247314 + PB1D9 SINE Alu 1 115 -5 2 1348 1046 198 19 9 chr12 100010988 100011202 -21246328 + B3 SINE B2 1 216 0 3 1348 626 279 44 12 chr12 100011230 100011390 -21246140 + 7SK RNA RNA 2 166 -165 3 1348 22 0 0 0 chr12 100011512 100011534 -21245996 + AT_rich Low_complexity Low_complexity 1 22 0 3 1348 1180 167 47 0 chr12 100011548 100011763 -21245767 + URR1B DNA MER1_type 1 225 0 3 1348 387 288 44 18 chr12 100013140 100013253 -21244277 - PB1D10 SINE Alu 0 117 2 3 1348 245 279 103 0 chr12 100013196 100013264 -21244266 - B4 SINE B4 -148 144 70 3 1348 312 247 163 69 chr12 100013710 100014102 -21243428 - HAL1 LINE L1 -1407 1100 672 3 1348 204 298 59 34 chr12 100015764 100015882 -21241648 + L2 LINE L2 2392 2512 -907 3 1348 559 221 38 8 chr12 100016038 100016170 -21241360 - B1_Mur1 SINE Alu -9 140 5 3 1348 824 163 138 21 chr12 100019030 100019218 -21238312 - B3 SINE B2 -6 210 1 3 1348 330 169 0 0 chr12 100020154 100020219 -21237311 + (TTA)n Simple_repeat Simple_repeat 2 66 0 4 1348 1319 86 27 0 chr12 100021108 100021295 -21236235 + B2_Mm1a SINE B2 2 193 0 4 1348 666 182 16 32 chr12 100022377 100022502 -21235028 + B3 SINE B2 8 130 -86 4 1348 709 252 19 0 chr12 100022862 100023017 -21234513 - B3A SINE B2 -38 160 3 4 1348 253 260 108 14 chr12 100024195 100024269 -21233261 - ID4_ SINE ID 0 83 3 4 1348 410 279 98 25 chr12 100024378 100024610 -21232920 + B4 SINE B4 7 292 0 4 1348 599 245 199 37 chr12 100026401 100026592 -21230938 - ID_B1 SINE B4 -1 223 2 4 1348 307 254 19 167 chr12 100029180 100029297 -21228233 - B1_Mus2 SINE Alu -4 116 2 4 1348 272 211 39 0 chr12 100029705 100029757 -21227773 - B1_Mus1 SINE Alu -87 61 8 4 1348 246 306 93 12 chr12 100029712 100029798 -21227732 - B4A SINE B4 -155 137 45 4 1348 371 319 54 47 chr12 100029965 100030113 -21227417 - B1_Mur1 SINE Alu 0 149 1 5 1348 344 333 54 50 chr12 100029970 100030191 -21227339 - ID_B1 SINE B4 -1 223 2 5 1348 566 233 51 29 chr12 100031123 100031260 -21226270 - B1_Mur3 SINE Alu -9 140 1 5 1348 423 299 18 27 chr12 100031620 100031730 -21225800 + RSINE1 SINE B4 44 152 -13 5 1348 213 369 0 0 chr12 100032131 100032196 -21225334 + ID SINE ID 5 69 -155 5 1348 464 248 9 0 chr12 100033128 100033233 -21224297 + PB1D10 SINE Alu 2 107 -10 5 1348 189 171 0 0 chr12 100033511 100033546 -21223984 + CT-rich Low_complexity Low_complexity 1 35 0 5 1348 253 272 96 71 chr12 100033547 100033588 -21223942 + YREP_Mm Unknown Unknown 135 247 -1565 5 1348 728 108 24 47 chr12 100033588 100033715 -21223815 - B1_Mus2 SINE Alu -10 137 14 5 1348 253 272 96 71 chr12 100033715 100033745 -21223785 + YREP_Mm Unknown Unknown 248 337 -1475 5 1348 298 256 0 126 chr12 100034019 100034122 -21223408 + B3A SINE B2 4 93 -105 5 1348 900 243 63 0 chr12 100034255 100034494 -21223036 + Lx5 LINE L1 6791 7044 -6 6 1348 366 238 75 9 chr12 100035140 100035246 -21222284 - RSINE1 SINE B4 -6 159 47 6 1348 344 124 305 0 chr12 100035749 100035854 -21221676 - B1_Mur2 SINE Alu -11 138 2 6 1348 342 0 0 0 chr12 100035903 100035941 -21221589 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1348 304 193 0 0 chr12 100035945 100036002 -21221528 - B3 SINE B2 -159 57 1 6 1348 385 281 8 76 chr12 100036155 100036286 -21221244 - B4 SINE B4 -168 124 3 6 1348 455 324 72 14 chr12 100036630 100036768 -21220762 + RSINE1 SINE B4 3 148 -17 6 1348 270 207 0 0 chr12 100037541 100037599 -21219931 + T-rich Low_complexity Low_complexity 1 58 0 6 1348 689 126 17 0 chr12 100037586 100037705 -21219825 + (TTCC)n Simple_repeat Simple_repeat 1 121 0 6 1348 1352 57 39 22 chr12 100037706 100037886 -21219644 - B2_Mm2 SINE B2 -9 186 4 6 1348 23 54 0 0 chr12 100038357 100038394 -21219136 + AT_rich Low_complexity Low_complexity 1 37 0 7 1348 485 224 10 39 chr12 100039615 100039717 -21217813 + B1_Mur2 SINE Alu 27 125 -24 7 1348 306 264 11 21 chr12 100039849 100039942 -21217588 + (TG)n Simple_repeat Simple_repeat 2 93 0 7 1348 258 277 3 0 chr12 100039957 100040021 -21217509 + ID4_ SINE ID 9 73 -10 7 1348 622 246 14 0 chr12 100040023 100040161 -21217369 - B1F SINE Alu -7 142 3 7 1348 210 258 48 0 chr12 100041341 100041403 -21216127 - ID SINE ID -153 71 7 7 1348 553 310 23 27 chr12 100041821 100042040 -21215490 + ID_B1 SINE B4 1 218 -6 7 1348 369 276 93 100 chr12 100042082 100042372 -21215158 + RLTR12B LTR ERVK 223 500 -27 7 1348 577 280 74 127 chr12 100042452 100042751 -21214779 - Cheshire DNA MER1_type -2118 302 20 7 1348 23 33 0 0 chr12 100042933 100042963 -21214567 + AT_rich Low_complexity Low_complexity 1 30 0 7 1348 360 0 0 0 chr12 100043198 100043238 -21214292 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1348 566 219 193 25 chr12 100043266 100043510 -21214020 - B4A SINE B4 -6 286 2 8 1348 29 70 0 0 chr12 100043753 100043810 -21213720 + AT_rich Low_complexity Low_complexity 1 57 0 8 1348 3094 29 8 5 chr12 100043912 100044299 -21213231 + MTA_Mm LTR MaLR 1 388 -8 8 1348 285 276 143 43 chr12 100044831 100044971 -21212559 + RMER15 LTR ERVL 407 560 -15 8 1348 191 314 29 0 chr12 100045262 100045332 -21212198 + L3 LINE CR1 4048 4119 -370 8 1348 315 65 0 0 chr12 100045462 100045508 -21212022 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1348 372 77 0 0 chr12 100045508 100045560 -21211970 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1348 424 86 29 0 chr12 100045654 100045724 -21211806 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 8 1348 748 259 49 54 chr12 100045724 100045746 -21211784 - B4 SINE B4 -69 223 203 8 1348 3414 25 5 0 chr12 100045746 100046140 -21211390 + MTA_Mm LTR MaLR 1 396 0 9 1348 748 259 49 54 chr12 100046140 100046341 -21211189 - B4 SINE B4 -90 202 1 8 1348 575 280 146 12 chr12 100046472 100046794 -21210736 + MLT1A0 LTR MaLR 1 365 0 9 1348 258 271 17 0 chr12 100047317 100047376 -21210154 - B1F SINE Alu -87 62 3 9 1348 495 300 74 75 chr12 100047376 100047588 -21209942 + B4A SINE B4 64 276 -16 9 1348 426 69 0 0 chr12 100047588 100047646 -21209884 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1348 495 291 83 83 chr12 100047646 100047660 -21209870 + B4A SINE B4 277 290 -2 9 1348 743 76 246 0 chr12 100047775 100047893 -21209637 + B1_Mus1 SINE Alu 2 148 0 9 1348 219 232 0 0 chr12 100047893 100047942 -21209588 + A-rich Low_complexity Low_complexity 7 55 0 9 1348 189 0 0 0 chr12 100049216 100049237 -21208293 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1348 336 277 35 9 chr12 100049628 100049741 -21207789 + B1F SINE Alu 34 149 0 9 1348 290 295 147 0 chr12 100050830 100050925 -21206605 + B1F SINE Alu 33 141 -8 9 1348 22 0 0 0 chr12 100050981 100051003 -21206527 + AT_rich Low_complexity Low_complexity 1 22 0 1 1348 21 0 0 0 chr12 100051090 100051111 -21206419 + AT_rich Low_complexity Low_complexity 1 21 0 1 1348 13174 81 17 26 chr12 100051283 100051681 -21205849 - L1VL2 LINE L1 -632 2983 2591 1 1348 527 310 0 0 chr12 100051681 100051826 -21205704 - RSINE1 SINE B4 -16 149 5 1 1348 13174 81 21 22 chr12 100051826 100053834 -21203696 - L1VL2 LINE L1 -1025 2590 583 1 1348 653 178 89 48 chr12 100053834 100053958 -21203572 + B1_Mur1 SINE Alu 13 141 -8 1 1348 230 125 0 48 chr12 100053970 100054012 -21203518 + PB1D9 SINE Alu 81 120 0 1 1348 241 250 0 0 chr12 100054438 100054486 -21203044 + (CATA)n Simple_repeat Simple_repeat 1 48 0 1 1348 410 315 83 43 chr12 100054486 100054861 -21202669 - Lx8 LINE L1 -20 7453 7064 1 1348 2103 107 7 0 chr12 100055390 100055689 -21201841 - Lx2 LINE L1 -16 6981 6681 1 1348 195 129 0 0 chr12 100057121 100057152 -21200378 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1348 774 251 16 16 chr12 100057169 100057355 -21200175 - B3 SINE B2 -30 186 1 1 1348 534 295 0 23 chr12 100058492 100058624 -21198906 + B1F1 SINE Alu 7 135 -14 1 1348 259 340 39 29 chr12 100058676 100058779 -21198751 + PB1D10 SINE Alu 14 117 0 1 1348 225 0 0 0 chr12 100060447 100060472 -21197058 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1348 407 265 52 0 chr12 100060482 100060618 -21196912 + B1F SINE Alu 1 143 -6 1 1348 1675 31 0 0 chr12 100060626 100060819 -21196711 + B2_Mm1t SINE B2 1 193 0 1 1348 475 158 211 0 chr12 100061258 100061372 -21196158 - B1F2 SINE Alu -11 138 1 1 1348 202 353 88 15 chr12 100061462 100061614 -21195916 - MIRb SINE MIR -65 197 39 1 1348 281 312 13 0 chr12 100062009 100062086 -21195444 - ID4 SINE ID -4 79 2 1 1348 340 174 130 0 chr12 100062177 100062246 -21195284 + B4 SINE B4 2 79 -213 1 1348 22 0 0 0 chr12 100063880 100063902 -21193628 + AT_rich Low_complexity Low_complexity 1 22 0 1 1348 225 0 0 0 chr12 100063957 100063982 -21193548 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 1348 441 297 51 19 chr12 100064223 100064381 -21193149 + RSINE1 SINE B4 3 165 0 1 1348 497 285 82 44 chr12 100064460 100064618 -21192912 + RSINE1 SINE B4 2 165 0 1 1348 25 0 0 0 chr12 100065263 100065288 -21192242 + AT_rich Low_complexity Low_complexity 1 25 0 1 1348 26 0 0 0 chr12 100065312 100065338 -21192192 + AT_rich Low_complexity Low_complexity 1 26 0 1 1348 1002 65 258 0 chr12 100066034 100066189 -21191341 - B2_Mm2 SINE B2 0 195 1 1 1348 470 17 0 17 chr12 100066550 100066610 -21190920 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1 1348 637 187 1 9 chr12 100066610 100066719 -21190811 - B1_Mur1 SINE Alu 0 149 41 1 1348 442 274 118 34 chr12 100067188 100067426 -21190104 + RMER5 LTR ERV1 119 376 -158 1 1348 983 283 15 42 chr12 100067431 100067766 -21189764 - Lx5 LINE L1 -22 7028 6703 1 1348 635 87 22 0 chr12 100067801 100067893 -21189637 + L1_Mur2 LINE L1 4795 4888 -989 1 1348 695 276 25 10 chr12 100067896 100068094 -21189436 + RMER5 LTR ERV1 334 534 0 1 1348 372 320 0 52 chr12 100068138 100068273 -21189257 + B1F SINE Alu 22 149 0 1 1348 1174 68 0 0 chr12 100068426 100068574 -21188956 - B1_Mus1 SINE Alu 0 148 1 1 1348 1691 177 138 8 chr12 100070674 100071045 -21186485 + MTD LTR MaLR 1 419 0 1 1348 22 0 0 0 chr12 100073919 100073941 -21183589 + AT_rich Low_complexity Low_complexity 1 22 0 1 1348 1206 241 16 10 chr12 100074152 100074462 -21183068 - Lx3C LINE L1 -2 6974 6663 1 1348 975 137 25 0 chr12 100074460 100074621 -21182909 + Lx3C LINE L1 6463 6627 -349 1 1348 740 171 16 0 chr12 100074679 100074802 -21182728 + B1_Mur1 SINE Alu 19 143 -6 1 1348 368 318 138 52 chr12 100075626 100075915 -21181615 + L1M4b LINE L1 14 327 -7007 1 1348 638 295 195 6 chr12 100076324 100076672 -21180858 + L1M4b LINE L1 4473 4886 -2120 1 1348 405 302 56 0 chr12 100076686 100076812 -21180718 + B1F SINE Alu 16 148 -1 1 1348 207 177 0 46 chr12 100076813 100076878 -21180652 + GA-rich Low_complexity Low_complexity 4 65 0 1 1348 989 243 90 32 chr12 100076899 100077299 -21180231 + L1M4b LINE L1 4912 5334 -1672 1 1348 492 324 21 0 chr12 100077669 100077811 -21179719 + RSINE1 SINE B4 6 150 -15 1 1348 297 292 0 0 chr12 100078206 100078271 -21179259 + tRNA-Ala-GCY_ tRNA tRNA 4 68 -7 1 1348 442 286 95 71 chr12 100078301 100078651 -21178879 + MER57D LTR ERV1 12 409 -2 1 1348 28 0 0 0 chr12 100078983 100079011 -21178519 + AT_rich Low_complexity Low_complexity 1 28 0 1 1348 265 179 0 82 chr12 100079198 100079259 -21178271 + 4.5SRNA scRNA scRNA 33 88 -6 1 1348 499 232 42 0 chr12 100079206 100079301 -21178229 + B1F2 SINE Alu 41 139 -10 1 1348 268 253 79 22 chr12 100080546 100080635 -21176895 - RSINE1 SINE B4 -40 125 32 1 1348 199 244 42 17 chr12 100081329 100081396 -21176134 + MIRm SINE MIR 187 258 -18 1 1348 180 0 0 0 chr12 100081430 100081450 -21176080 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1348 472 168 32 8 chr12 100081450 100081576 -21175954 + GA-rich Low_complexity Low_complexity 2 130 0 1 1348 367 252 227 8 chr12 100081576 100081708 -21175822 - RSINE1 SINE B4 -1 164 4 1 1348 818 117 13 25 chr12 100081708 100081866 -21175664 + T-rich Low_complexity Low_complexity 5 160 0 1 1348 674 213 67 54 chr12 100081876 100082025 -21175505 - ID_B1 SINE B4 0 224 74 1 1348 14567 169 20 50 chr12 100083027 100084788 -21172742 + L1VL4 LINE L1 704 2459 -3417 1 1348 773 121 39 24 chr12 100084788 100084915 -21172615 + B1_Mus1 SINE Alu 1 129 -19 1 1348 230 0 33 0 chr12 100084916 100084946 -21172584 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1348 14567 166 24 62 chr12 100084946 100085671 -21171859 + L1VL4 LINE L1 2461 3147 -2730 1 1348 180 77 0 0 chr12 100085671 100085697 -21171833 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1348 14567 166 24 62 chr12 100085697 100086941 -21170589 + L1VL4 LINE L1 3148 4432 -1445 1 1348 2314 174 82 18 chr12 100086941 100087451 -21170079 + Lx3C LINE L1 6431 6973 -3 1 1348 241 320 108 33 chr12 100088112 100088325 -21169205 - L2a LINE L2 -37 3389 3161 1 1348 792 161 7 59 chr12 100088760 100088912 -21168618 - B1_Mur3 SINE Alu -4 145 2 1 1348 499 173 9 9 chr12 100088957 100089068 -21168462 + CT-rich Low_complexity Low_complexity 2 112 0 1 1348 579 205 148 47 chr12 100089108 100089277 -21168253 - B3 SINE B2 -27 189 4 1 1348 534 261 27 16 chr12 100089344 100089527 -21168003 - L1MD3 LINE L1 -81 7914 7730 1 1348 476 276 80 29 chr12 100090067 100090205 -21167325 - RSINE1 SINE B4 -15 150 6 1 1348 24 0 0 0 chr12 100090363 100090387 -21167143 + AT_rich Low_complexity Low_complexity 1 24 0 1 1348 26 50 0 0 chr12 100090629 100090669 -21166861 + AT_rich Low_complexity Low_complexity 1 40 0 1 1348 217 51 51 0 chr12 100090694 100090733 -21166797 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 1 1348 371 123 15 0 chr12 100091151 100091216 -21166314 + Lx4B LINE L1 6815 6880 -178 1 1348 332 261 43 36 chr12 100091406 100091545 -21165985 + MLT1A1 LTR MaLR 268 407 -1 1 1348 515 265 73 29 chr12 100091666 100091802 -21165728 - RSINE1 SINE B4 -12 153 12 1 1348 250 276 0 22 chr12 100091889 100091978 -21165552 + L1MA6 LINE L1 6167 6253 -47 1 1348 248 268 18 0 chr12 100091979 100092035 -21165495 + ID4 SINE ID 1 57 -26 1 1348 254 202 59 71 chr12 100092766 100092851 -21164679 - B2_Mm2 SINE B2 -2 193 110 1 1348 5449 61 1 3 chr12 100092851 100093597 -21163933 + L1Md_F2 LINE L1 5838 6582 0 1 1348 1260 76 52 0 chr12 100093606 100093778 -21163752 - B2_Mm2 SINE B2 -14 181 1 1 1348 193 267 50 0 chr12 100094732 100094792 -21162738 - MIRb SINE MIR -17 251 189 1 1348 236 364 21 35 chr12 100095803 100095948 -21161582 - MIRb SINE MIR -7 261 119 1 1348 1188 75 0 0 chr12 100096278 100096424 -21161106 + B1_Mm SINE Alu 2 147 0 1 1348 1138 215 9 5 chr12 100096644 100096859 -21160671 + B3 SINE B2 1 216 0 1 1348 492 237 0 0 chr12 100097822 100097915 -21159615 - B3A SINE B2 -104 94 2 1 1348 1439 282 112 13 chr12 100099746 100100531 -21156999 + Lx9 LINE L1 6390 7412 -232 1 1348 203 61 30 0 chr12 100100535 100100568 -21156962 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1348 27 0 0 0 chr12 100100686 100100713 -21156817 + AT_rich Low_complexity Low_complexity 1 27 0 1 1348 266 273 130 0 chr12 100100743 100100820 -21156710 + PB1D7 SINE Alu 4 90 -30 1 1348 666 83 37 0 chr12 100101646 100101755 -21155775 + Lx2A LINE L1 6891 7003 -5 1 1348 220 218 0 60 chr12 100102157 100102274 -21155256 + GA-rich Low_complexity Low_complexity 3 112 0 1 1348 303 93 0 0 chr12 100102668 100102711 -21154819 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1 1348 1388 89 16 0 chr12 100102711 100102902 -21154628 - B2_Mm2 SINE B2 -1 194 1 1 1348 333 242 111 87 chr12 100102917 100103089 -21154441 + L1MA9 LINE L1 6068 6243 -69 1 1348 469 174 275 0 chr12 100103109 100103218 -21154312 + B1F2 SINE Alu 2 140 -9 1 1348 824 51 248 0 chr12 100104274 100104391 -21153139 + B1_Mus1 SINE Alu 1 146 -2 1 1348 429 279 43 0 chr12 100104616 100104728 -21152802 - B1F1 SINE Alu 0 117 1 1 1348 261 0 0 0 chr12 100104736 100104765 -21152765 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1348 378 204 11 11 chr12 100105545 100105634 -21151896 + RMER3D-int LTR ERVK 2282 2370 -472 1 1348 1618 189 50 8 chr12 100105734 100106197 -21151333 + MYSERV16_I-int LTR ERVK 1807 2241 -85 1 1348 574 314 20 48 chr12 100106286 100106537 -21150993 + RLTR17 LTR ERVK 125 368 -324 1 1348 307 274 48 0 chr12 100107046 100107108 -21150422 - ID4 SINE ID -1 82 18 1 1348 276 269 171 9 chr12 100107114 100107219 -21150311 - B1F SINE Alu -23 126 5 1 1348 551 164 29 0 chr12 100107368 100107472 -21150058 + Lx8 LINE L1 6435 6541 -932 2 1348 270 331 63 29 chr12 100107481 100107655 -21149875 + Lx8 LINE L1 7146 7325 -148 2 1348 231 88 0 0 chr12 100108181 100108215 -21149315 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1348 619 242 30 0 chr12 100108216 100108348 -21149182 - B1_Mur1 SINE Alu -13 136 1 2 1348 365 261 198 6 chr12 100108587 100108764 -21148766 - B3 SINE B2 -3 213 3 2 1348 25 31 0 0 chr12 100109117 100109149 -21148381 + AT_rich Low_complexity Low_complexity 1 32 0 2 1348 270 311 189 0 chr12 100109296 100109428 -21148102 + RSINE1 SINE B4 1 157 -8 2 1348 811 173 22 0 chr12 100109588 100109727 -21147803 + B1_Mur1 SINE Alu 3 144 -5 2 1348 595 296 15 65 chr12 100109905 100110104 -21147426 + B3A SINE B2 1 189 -9 2 1348 503 302 71 11 chr12 100110359 100110543 -21146987 - B3A SINE B2 -3 195 1 2 1348 388 259 122 7 chr12 100110783 100110931 -21146599 + Cheshire DNA MER1_type 1 165 -2255 2 1348 21 0 0 0 chr12 100112210 100112231 -21145299 + AT_rich Low_complexity Low_complexity 1 21 0 2 1348 240 293 13 0 chr12 100113204 100113279 -21144251 - ID4_ SINE ID -6 77 2 2 1348 713 233 165 11 chr12 100113745 100113927 -21143603 + B3 SINE B2 1 210 -6 2 1348 22 35 0 0 chr12 100114147 100114176 -21143354 + AT_rich Low_complexity Low_complexity 1 29 0 2 1348 2488 282 116 27 chr12 100114805 100114889 -21142641 + Lx8 LINE L1 6086 6177 -1296 2 1348 297 0 0 0 chr12 100114889 100114922 -21142608 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1348 2488 282 116 27 chr12 100114922 100116074 -21141456 + Lx8 LINE L1 6178 7432 -41 2 1348 480 59 0 0 chr12 100116076 100116144 -21141386 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1348 322 260 26 0 chr12 100116256 100116333 -21141197 + ID2 SINE ID 3 81 -2 2 1348 31 58 0 0 chr12 100116689 100116741 -21140789 + AT_rich Low_complexity Low_complexity 1 52 0 2 1348 237 246 18 0 chr12 100116942 100116999 -21140531 + MER5B DNA MER1_type 3 60 -118 2 1348 529 259 54 0 chr12 100117194 100117360 -21140170 + MER3 DNA MER1_type 35 209 0 2 1348 40 37 0 0 chr12 100117557 100117611 -21139919 + AT_rich Low_complexity Low_complexity 1 54 0 2 1348 1563 43 0 11 chr12 100117899 100118088 -21139442 + B2_Mm1a SINE B2 1 187 -6 2 1348 702 158 67 42 chr12 100118091 100118256 -21139274 + Lx6 LINE L1 7288 7456 -4 2 1348 220 27 26 26 chr12 100118379 100118417 -21139113 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1348 1083 88 0 0 chr12 100118417 100118554 -21138976 - B1_Mus2 SINE Alu -9 138 2 2 1348 336 246 133 12 chr12 100119868 100120041 -21137489 - L1MB7 LINE L1 -3 6175 5982 2 1348 381 334 69 101 chr12 100120782 100121448 -21136082 + L1MEd LINE L1 374 1018 -5101 2 1348 239 310 15 44 chr12 100122146 100122281 -21135249 + L1MEf LINE L1 621 751 -5449 2 1348 737 274 81 56 chr12 100122310 100122557 -21134973 + B4A SINE B4 2 249 -43 2 1348 262 328 98 26 chr12 100122637 100122831 -21134699 + MIR SINE MIR 51 258 -4 2 1348 689 251 86 31 chr12 100123448 100123680 -21133850 + MIRb SINE MIR 2 246 -22 2 1348 21 0 0 0 chr12 100124560 100124581 -21132949 + AT_rich Low_complexity Low_complexity 1 21 0 2 1348 46 33 0 0 chr12 100124906 100124966 -21132564 + AT_rich Low_complexity Low_complexity 1 60 0 2 1348 781 171 8 0 chr12 100124993 100125122 -21132408 - B3 SINE B2 -86 130 1 2 1348 313 347 56 45 chr12 100125744 100126031 -21131499 + B4A SINE B4 3 292 0 2 1348 763 250 250 3 chr12 100126590 100126945 -21130585 + L1MB7 LINE L1 5508 5949 -235 2 1348 921 226 128 29 chr12 100126957 100127231 -21130299 - RMER15 LTR ERVL -15 560 260 2 1348 512 228 65 8 chr12 100127453 100127577 -21129953 - Lx8 LINE L1 -723 6750 6620 2 1348 1751 189 14 63 chr12 100127586 100127936 -21129594 + ORR1C1 LTR MaLR 6 338 -40 2 1348 635 23 58 11 chr12 100127936 100128023 -21129507 + BC1_Mm scRNA scRNA 1 91 -61 2 1348 316 182 0 0 chr12 100128021 100128076 -21129454 + ORR1C1 LTR MaLR 324 378 0 2 1348 457 236 0 0 chr12 100128076 100128165 -21129365 - Lx8 LINE L1 -853 6620 6532 2 1348 284 231 40 136 chr12 100128157 100128282 -21129248 - L1_Rod LINE L1 -367 5480 5368 2 1348 262 171 24 24 chr12 100128291 100128375 -21129155 - Lx9 LINE L1 -1 7643 7560 2 1348 1890 138 127 25 chr12 100128375 100128944 -21128586 + RMER6A LTR ERVK 1 753 -3 2 1348 963 228 82 11 chr12 100128991 100129261 -21128269 - Lx9 LINE L1 -160 7484 7196 2 1348 1626 208 109 3 chr12 100129268 100129645 -21127885 + Lx9 LINE L1 6426 6842 -802 2 1348 299 199 25 197 chr12 100129643 100129711 -21127819 - L1M2 LINE L1 -485 5395 5329 2 1348 217 25 23 70 chr12 100129711 100129754 -21127776 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 2 1348 299 199 25 197 chr12 100129754 100129777 -21127753 - L1M2 LINE L1 -552 5328 5317 2 1348 1163 62 14 0 chr12 100129777 100129921 -21127609 - B1_Mus2 SINE Alu 0 147 2 2 1348 299 199 25 197 chr12 100129921 100130072 -21127458 - L1M2 LINE L1 -564 5316 5194 2 1348 485 275 16 10 chr12 100130072 100130250 -21127280 - L1M2 LINE L1 -1146 4997 4792 2 1348 827 133 41 21 chr12 100130253 100130520 -21127010 - RMER17C LTR ERVK -80 330 1 2 1348 2943 115 38 0 chr12 100130638 100131063 -21126467 - RMER20A LTR ERVK -74 442 2 2 1348 354 230 142 60 chr12 100131073 100131207 -21126323 - RSINE1 SINE B4 -19 146 2 2 1348 267 304 211 28 chr12 100131207 100131420 -21126110 + L2 LINE L2 2793 3044 -375 2 1348 189 171 0 0 chr12 100131642 100131677 -21125853 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1348 960 69 0 8 chr12 100131693 100131824 -21125706 - B1_Mus1 SINE Alu 0 148 19 2 1348 225 261 10 42 chr12 100132874 100132970 -21124560 + CT-rich Low_complexity Low_complexity 6 98 0 2 1348 225 0 0 0 chr12 100133156 100133181 -21124349 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1348 1203 54 0 0 chr12 100133181 100133328 -21124202 - B1_Mus2 SINE Alu 0 147 1 2 1348 1342 337 79 54 chr12 100133521 100134216 -21123314 + L2a LINE L2 2158 2834 -585 2 1348 1972 142 70 59 chr12 100134216 100134590 -21122940 - ORR1C1 LTR MaLR 0 378 1 2 1348 1342 362 94 32 chr12 100134590 100134877 -21122653 + L2a LINE L2 2835 3169 -257 2 1348 360 0 0 0 chr12 100134925 100134965 -21122565 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1348 1930 169 65 12 chr12 100134995 100135336 -21122194 + ORR1B2 LTR MaLR 1 359 -8 2 1348 636 253 130 41 chr12 100135339 100135730 -21121800 + L1MA6 LINE L1 5819 6244 -56 2 1348 334 321 14 51 chr12 100135774 100135912 -21121618 - L2 LINE L2 -1309 2110 1978 2 1348 21 0 0 0 chr12 100137176 100137197 -21120333 + AT_rich Low_complexity Low_complexity 1 21 0 2 1348 252 268 46 11 chr12 100137344 100137431 -21120099 + BC1_Mm scRNA scRNA 14 103 -49 2 1349 29 0 0 0 chr12 100139823 100139852 -21117678 + GC_rich Low_complexity Low_complexity 1 29 0 2 1349 377 308 33 10 chr12 100140157 100140283 -21117247 - PB1D10 SINE Alu -9 140 5 2 1349 203 189 0 19 chr12 100140289 100140343 -21117187 + C-rich Low_complexity Low_complexity 3 55 0 2 1349 486 266 166 11 chr12 100141206 100141381 -21116149 + B4A SINE B4 6 207 -85 2 1349 470 305 29 44 chr12 100141382 100141519 -21116011 + RSINE1 SINE B4 3 137 -28 2 1349 192 77 0 0 chr12 100141533 100141559 -21115971 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 2 1349 253 294 63 32 chr12 100142411 100142506 -21115024 - MamRep1879 DNA hAT? -50 166 69 2 1349 23 33 0 0 chr12 100142718 100142748 -21114782 + AT_rich Low_complexity Low_complexity 1 30 0 2 1349 697 191 13 45 chr12 100143066 100143220 -21114310 + B1_Mur3 SINE Alu 1 149 0 2 1349 722 93 9 0 chr12 100143487 100143595 -21113935 + (TA)n Simple_repeat Simple_repeat 1 109 0 2 1349 25 0 0 0 chr12 100144145 100144170 -21113360 + AT_rich Low_complexity Low_complexity 1 25 0 2 1349 519 241 144 41 chr12 100144711 100144906 -21112624 - B3 SINE B2 -1 215 1 2 1349 725 271 36 21 chr12 100144996 100145194 -21112336 - B4 SINE B4 -18 274 70 2 1349 391 234 0 80 chr12 100145215 100145303 -21112227 - B4 SINE B4 -207 85 5 2 1349 980 265 109 55 chr12 100145580 100145947 -21111583 + MLT1C LTR MaLR 1 387 -80 2 1349 511 310 0 76 chr12 100146499 100146577 -21110953 - ID_B1 SINE B4 0 224 148 2 1349 1582 32 0 5 chr12 100146577 100146766 -21110764 - B2_Mm2 SINE B2 -5 190 3 2 1349 511 310 0 76 chr12 100146766 100146844 -21110686 - ID_B1 SINE B4 -77 147 80 2 1349 1393 221 162 51 chr12 100147288 100147799 -21109731 + RMER4B LTR ERVK 4 571 -14 2 1349 373 361 68 37 chr12 100147846 100148171 -21109359 + L1MCa LINE L1 1062 1396 -5027 2 1349 707 342 161 7 chr12 100148180 100148621 -21108909 + MLT2B1 LTR ERVL 2 510 -10 2 1349 238 190 35 0 chr12 100148631 100148689 -21108841 + L1MCa LINE L1 1438 1497 -4926 2 1349 497 302 118 37 chr12 100148872 100149168 -21108362 + L1MCa LINE L1 1674 1993 -5135 2 1349 952 98 12 0 chr12 100149174 100149338 -21108192 + (TAGA)n Simple_repeat Simple_repeat 3 168 0 2 1349 766 225 7 0 chr12 100149449 100149587 -21107943 - B3 SINE B2 -77 139 1 2 1349 204 97 0 0 chr12 100149789 100149820 -21107710 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1349 9006 98 13 4 chr12 100150032 100152153 -21105377 - L1_Mus3 LINE L1 -20 6618 4477 2 1349 7285 101 14 57 chr12 100152150 100153459 -21104071 - MusHAL1 LINE L1 -392 2320 1067 2 1349 2428 165 14 12 chr12 100153473 100153891 -21103639 - MTC LTR MaLR 0 421 3 2 1349 359 358 14 7 chr12 100154057 100154195 -21103335 - L2a LINE L2 -8 3418 3280 2 1349 352 162 80 13 chr12 100154685 100154760 -21102770 - ORR1C2 LTR MaLR -114 270 191 2 1349 459 0 0 0 chr12 100154760 100154811 -21102719 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1349 805 213 31 44 chr12 100155194 100155641 -21101889 + RMER17C LTR ERVK 1 380 -30 2 1349 801 0 0 0 chr12 100155643 100155732 -21101798 + (TTC)n Simple_repeat Simple_repeat 2 90 0 2 1349 274 281 131 23 chr12 100156633 100156808 -21100722 + L1MC3 LINE L1 7577 7770 -15 2 1349 886 223 14 19 chr12 100156818 100157033 -21100497 + B3 SINE B2 2 215 -1 2 1349 188 0 74 0 chr12 100157177 100157204 -21100326 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1349 351 257 18 90 chr12 100157808 100157919 -21099611 + BC1_Mm scRNA scRNA 2 104 -48 2 1349 328 305 10 40 chr12 100158216 100158315 -21099215 + MIR3 SINE MIR 96 191 -17 3 1349 427 188 0 34 chr12 100159674 100159762 -21097768 + ID_B1 SINE B4 132 216 -8 3 1349 486 0 0 0 chr12 100160508 100160562 -21096968 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1349 4216 101 27 19 chr12 100160670 100161304 -21096226 - L1_Mus4 LINE L1 0 6636 5998 3 1349 1228 77 5 0 chr12 100161304 100161499 -21096031 - L1VL4 LINE L1 -2219 1340 1145 3 1349 36268 30 0 0 chr12 100161510 100167737 -21089793 - L1Md_T LINE L1 0 6585 262 3 1349 3764 111 4 7 chr12 100167738 100168537 -21088993 - L1VL4 LINE L1 -2403 1156 361 3 1349 21 0 0 0 chr12 100168616 100168637 -21088893 + AT_rich Low_complexity Low_complexity 1 21 0 3 1349 21 0 0 0 chr12 100168654 100168675 -21088855 + AT_rich Low_complexity Low_complexity 1 21 0 3 1349 201 136 0 43 chr12 100169508 100169554 -21087976 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 1349 862 215 195 37 chr12 100169825 100169864 -21087666 - MTD LTR MaLR -8 411 371 3 1349 216 86 0 0 chr12 100169864 100169899 -21087631 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1349 862 215 195 37 chr12 100169899 100170106 -21087424 - MTD LTR MaLR -49 370 123 3 1349 344 22 22 0 chr12 100170106 100170151 -21087379 + (TAA)n Simple_repeat Simple_repeat 1 46 0 3 1349 862 215 195 37 chr12 100170151 100170226 -21087304 - MTD LTR MaLR -297 122 40 3 1349 319 271 109 48 chr12 100170380 100170397 -21087133 - B4 SINE B4 -67 225 147 3 1349 588 184 35 17 chr12 100170397 100170513 -21087017 - B1_Mur4 SINE Alu -30 120 3 3 1349 319 271 109 48 chr12 100170513 100170527 -21087003 - B4 SINE B4 -67 146 70 3 1349 1172 263 41 28 chr12 100171636 100172000 -21085530 - MTE2b LTR MaLR -10 369 1 3 1349 27 0 0 0 chr12 100172578 100172605 -21084925 + AT_rich Low_complexity Low_complexity 1 27 0 3 1349 1218 34 7 0 chr12 100174037 100174183 -21083347 + B1_Mus1 SINE Alu 2 148 0 3 1349 198 0 0 0 chr12 100174212 100174234 -21083296 + (CAA)n Simple_repeat Simple_repeat 2 23 0 3 1349 625 269 57 72 chr12 100174483 100174747 -21082783 - MTEa LTR MaLR 0 379 120 3 1349 796 256 114 16 chr12 100174922 100175168 -21082362 + B4A SINE B4 2 271 -21 3 1349 27 0 0 0 chr12 100177038 100177065 -21080465 + AT_rich Low_complexity Low_complexity 1 27 0 3 1349 1629 188 19 3 chr12 100177261 100177581 -21079949 - MTD LTR MaLR 0 419 95 3 1349 1129 236 191 70 chr12 100177610 100178610 -21078920 - MTC-int LTR MaLR -4 1254 32 3 1349 375 250 24 0 chr12 100178916 100179000 -21078530 + PB1D10 SINE Alu 5 90 -27 3 1349 229 228 17 17 chr12 100179376 100179434 -21078096 + CT-rich Low_complexity Low_complexity 1 58 0 3 1349 272 326 10 21 chr12 100182743 100182838 -21074692 + B4 SINE B4 2 95 -197 3 1349 635 325 0 0 chr12 100182838 100183001 -21074529 + RSINE1 SINE B4 3 165 0 3 1349 890 244 50 114 chr12 100183074 100183476 -21074054 + MTE2a LTR MaLR 1 376 -3 3 1349 297 169 31 30 chr12 100183483 100183555 -21073975 + B4A SINE B4 157 226 -66 3 1349 530 300 39 39 chr12 100183555 100183836 -21073694 + B4A SINE B4 2 282 -10 3 1349 269 269 30 23 chr12 100183836 100183896 -21073634 + B4 SINE B4 227 289 -3 3 1349 186 43 0 0 chr12 100184081 100184104 -21073426 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 3 1349 834 117 65 7 chr12 100184138 100184276 -21073254 + B1_Mus1 SINE Alu 3 148 0 3 1349 194 57 57 0 chr12 100184283 100184318 -21073212 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 3 1349 343 224 23 34 chr12 100185171 100185259 -21072271 - L1MC5 LINE L1 -50 7911 7825 3 1349 832 176 28 0 chr12 100185407 100185549 -21071981 - B1_Mus1 SINE Alu 0 148 3 3 1349 352 322 0 0 chr12 100185748 100185838 -21071692 + PB1D10 SINE Alu 6 95 -22 3 1349 450 250 35 18 chr12 100186547 100186661 -21070869 - PB1D10 SINE Alu -1 116 1 3 1349 194 33 67 0 chr12 100186678 100186708 -21070822 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1349 194 314 67 44 chr12 100186923 100187013 -21070517 + MER5B DNA MER1_type 87 178 0 3 1349 565 272 47 12 chr12 100187430 100187601 -21069929 + B4 SINE B4 2 178 -114 3 1349 460 282 141 38 chr12 100187833 100187978 -21069552 - B4A SINE B4 -2 290 140 3 1349 2698 37 61 3 chr12 100187978 100188305 -21069225 - ORR1A1 LTR MaLR 0 346 1 3 1349 460 282 141 38 chr12 100188305 100188340 -21069190 - B4A SINE B4 -153 139 97 3 1349 1203 106 0 0 chr12 100188340 100188681 -21068849 + (CA)n Simple_repeat Simple_repeat 1 341 0 3 1349 460 282 141 38 chr12 100188681 100188759 -21068771 - B4A SINE B4 -196 96 2 3 1349 310 315 35 41 chr12 100189067 100189236 -21068294 + L1ME4a LINE L1 5719 5886 -238 3 1349 773 122 23 0 chr12 100189762 100189893 -21067637 + (TCTCCC)n Simple_repeat Simple_repeat 4 137 0 3 1349 339 25 0 0 chr12 100189893 100189933 -21067597 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1349 1171 41 7 0 chr12 100190391 100190528 -21067002 + B1_Mus2 SINE Alu 2 138 -9 3 1349 243 0 0 0 chr12 100190528 100190555 -21066975 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1349 575 276 8 0 chr12 100190585 100190719 -21066811 + RSINE1 SINE B4 11 145 -20 3 1349 195 42 0 0 chr12 100190802 100190826 -21066704 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 1349 36 77 0 0 chr12 100191053 100191131 -21066399 + AT_rich Low_complexity Low_complexity 1 78 0 3 1349 1997 158 11 30 chr12 100191136 100191507 -21066023 - ORR1C1 LTR MaLR -14 364 1 3 1349 754 326 115 35 chr12 100191516 100191626 -21065904 - Lx8 LINE L1 -17 7456 7349 3 1349 414 0 0 0 chr12 100191626 100191672 -21065858 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1349 754 326 115 35 chr12 100191672 100192162 -21065368 - Lx8 LINE L1 -125 7348 6808 3 1349 1001 243 57 50 chr12 100192359 100192640 -21064890 + B4 SINE B4 10 292 0 3 1349 671 35 12 0 chr12 100192677 100192763 -21064767 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1349 1346 236 75 3 chr12 100192951 100193296 -21064234 - ORR1D2 LTR MaLR 0 370 1 3 1349 516 222 37 111 chr12 100194448 100194610 -21062920 + B3A SINE B2 6 155 -43 3 1349 188 67 33 0 chr12 100194617 100194647 -21062883 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 3 1349 371 336 18 0 chr12 100194835 100194945 -21062585 - B4A SINE B4 -163 129 18 3 1349 234 0 0 0 chr12 100195644 100195670 -21061860 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1349 205 171 0 0 chr12 100195804 100195839 -21061691 - MIR SINE MIR -125 83 49 3 1349 470 210 28 9 chr12 100196103 100196209 -21061321 - PB1D10 SINE Alu -1 116 12 3 1349 235 256 110 0 chr12 100196897 100196979 -21060551 - L2c LINE L2 0 3387 3297 3 1349 1329 131 61 5 chr12 100197234 100197448 -21060082 - URR1A DNA MER1_type 0 226 1 3 1349 444 67 0 0 chr12 100198100 100198160 -21059370 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1349 306 0 0 0 chr12 100198160 100198193 -21059337 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1349 231 36 0 0 chr12 100198193 100198221 -21059309 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 3 1349 790 294 81 15 chr12 100198221 100198480 -21059050 - B4 SINE B4 -10 282 7 3 1349 26 0 0 0 chr12 100198550 100198576 -21058954 + AT_rich Low_complexity Low_complexity 1 26 0 3 1349 292 248 88 10 chr12 100200004 100200106 -21057424 - PB1D10 SINE Alu -7 110 1 3 1349 895 184 130 10 chr12 100200649 100200841 -21056689 + B3 SINE B2 2 216 0 3 1349 249 212 110 21 chr12 100201160 100201278 -21056252 + Lx5 LINE L1 6929 7054 -4 3 1349 448 311 97 59 chr12 100201313 100201440 -21056090 + Lx8 LINE L1 6996 7118 -355 3 1349 5327 12 0 0 chr12 100201440 100202028 -21055502 + L1Md_A LINE L1 5995 6582 0 3 1349 448 311 97 59 chr12 100202028 100202290 -21055240 + Lx8 LINE L1 7119 7400 -73 3 1349 1091 95 0 7 chr12 100202312 100202461 -21055069 - B1_Mus1 SINE Alu 0 148 1 3 1349 472 298 29 53 chr12 100203627 100203833 -21053697 - MER68 LTR ERVL 0 563 363 3 1349 1692 208 67 100 chr12 100203861 100204400 -21053130 - RMER15 LTR ERVL -33 542 22 3 1349 626 262 194 29 chr12 100204428 100204742 -21052788 - MER68 LTR ERVL -195 368 3 3 1349 24 32 0 0 chr12 100204914 100204945 -21052585 + AT_rich Low_complexity Low_complexity 1 31 0 3 1349 351 330 9 0 chr12 100205204 100205319 -21052211 - B1F SINE Alu -33 116 1 3 1349 242 272 0 0 chr12 100205819 100205900 -21051630 - PB1D10 SINE Alu -34 83 3 3 1349 183 42 0 0 chr12 100206369 100206393 -21051137 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1349 912 251 69 14 chr12 100207026 100207301 -21050229 - B4 SINE B4 -2 290 1 3 1349 772 265 107 41 chr12 100207346 100207665 -21049865 - MTE2a LTR MaLR 0 379 40 3 1349 1193 41 0 26 chr12 100207686 100207837 -21049693 + B1_Mus1 SINE Alu 2 148 0 3 1349 256 68 25 75 chr12 100207838 100207918 -21049612 + A-rich Low_complexity Low_complexity 3 78 0 3 1349 228 200 16 62 chr12 100207918 100207982 -21049548 - MTE2a LTR MaLR -316 63 3 3 1349 371 252 66 126 chr12 100208059 100208241 -21049289 - B2_Mm2 SINE B2 -8 187 17 3 1349 376 277 0 0 chr12 100208326 100208340 -21049190 + B4 SINE B4 74 153 -136 3 1349 417 136 0 0 chr12 100208340 100208406 -21049124 + PB1D9 SINE Alu 3 68 -52 3 1349 24 32 0 0 chr12 100208426 100208457 -21049073 + AT_rich Low_complexity Low_complexity 1 31 0 3 1349 319 255 0 11 chr12 100208567 100208662 -21048868 + MLT1A1 LTR MaLR 305 398 -10 3 1349 479 355 20 36 chr12 100209659 100209855 -21047675 + B4A SINE B4 100 292 0 3 1349 436 278 17 9 chr12 100209971 100210087 -21047443 + B4 SINE B4 172 288 -4 3 1349 669 215 50 58 chr12 100210279 100210513 -21047017 - L1MA4A LINE L1 -273 6027 5784 3 1349 333 0 0 0 chr12 100210513 100210550 -21046980 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1349 669 208 34 62 chr12 100210550 100210564 -21046966 - L1MA4A LINE L1 -520 5783 5770 3 1349 335 255 38 0 chr12 100210671 100210777 -21046753 + Kanga1a DNA Tc2 250 359 -395 3 1349 312 292 31 10 chr12 100211379 100211476 -21046054 + PB1 SINE Alu 21 119 -8 3 1349 351 276 40 16 chr12 100212644 100212769 -21044761 + L2a LINE L2 3298 3425 -1 3 1349 368 266 6 28 chr12 100213546 100213675 -21043855 - RSINE1 SINE B4 -169 123 2 3 1349 447 214 0 0 chr12 100214818 100214907 -21042623 + MIRb SINE MIR 36 124 -144 3 1349 285 98 0 0 chr12 100215249 100215290 -21042240 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 3 1349 2469 121 226 70 chr12 100215298 100215895 -21041635 + RMER6C LTR ERVK 1 690 0 3 1349 438 221 158 9 chr12 100216433 100216547 -21040983 + B4A SINE B4 1 131 -161 4 1349 348 24 0 0 chr12 100216548 100216589 -21040941 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1349 453 293 60 60 chr12 100216610 100216759 -21040771 - RSINE1 SINE B4 -14 151 3 4 1349 222 37 0 0 chr12 100216860 100216887 -21040643 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1349 2569 129 34 26 chr12 100217051 100217466 -21040064 + MTC LTR MaLR 4 421 0 4 1349 643 139 8 25 chr12 100218616 100218734 -21038796 - B1_Mur3 SINE Alu -31 118 3 4 1349 289 268 0 118 chr12 100218628 100218755 -21038775 - MT2B LTR ERVL -343 258 147 4 1349 1459 68 16 5 chr12 100218834 100219025 -21038505 + B2_Mm2 SINE B2 2 194 -1 4 1349 235 304 54 11 chr12 100219250 100219343 -21038187 - L2a LINE L2 -24 3402 3306 4 1349 683 239 45 15 chr12 100219510 100219702 -21037828 + B3A SINE B2 12 215 -1 4 1349 240 32 0 0 chr12 100220116 100220128 -21037402 + (T)n Simple_repeat Simple_repeat 1 12 0 4 1349 1105 102 0 0 chr12 100220128 100220275 -21037255 - B1_Mus2 SINE Alu 0 147 1 4 1349 240 32 0 0 chr12 100220275 100220293 -21037237 + (T)n Simple_repeat Simple_repeat 1 18 0 4 1349 336 24 0 0 chr12 100221655 100221696 -21035834 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1349 1646 223 60 3 chr12 100224075 100224461 -21033069 + MTD LTR MaLR 12 419 0 4 1349 198 0 0 0 chr12 100224891 100224913 -21032617 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1349 283 218 49 37 chr12 100225551 100225632 -21031898 + MLT1A1 LTR MaLR 320 401 -7 4 1349 350 292 0 0 chr12 100225639 100225735 -21031795 - MLT1C LTR MaLR -321 146 51 4 1349 4321 48 6 0 chr12 100225865 100226388 -21031142 - L1Md_F2 LINE L1 -1 6581 6056 4 1349 2410 123 6 11 chr12 100226513 100226874 -21030656 + RLTR15 LTR ERVK 1 359 0 4 1349 241 24 0 68 chr12 100226913 100226957 -21030573 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1349 908 142 284 0 chr12 100226971 100227147 -21030383 + URR1A DNA MER1_type 1 226 0 4 1349 369 346 29 0 chr12 100229162 100229266 -21028264 + PB1D10 SINE Alu 3 109 -8 4 1349 351 0 0 0 chr12 100229283 100229322 -21028208 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1349 543 16 0 0 chr12 100229322 100229385 -21028145 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1349 513 0 0 0 chr12 100230005 100230062 -21027468 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1349 324 0 0 0 chr12 100230541 100230577 -21026953 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1349 323 344 26 78 chr12 100230603 100230871 -21026659 - Lx8 LINE L1 -6 7467 7214 4 1349 267 402 24 0 chr12 100230899 100231068 -21026462 + Lx8 LINE L1 6998 7170 -303 4 1349 229 64 0 60 chr12 100231300 100231350 -21026180 + (TGGGGG)n Simple_repeat Simple_repeat 3 49 0 4 1349 1765 193 70 28 chr12 100231461 100231861 -21025669 - MTD LTR MaLR -2 417 1 4 1349 1101 164 16 95 chr12 100231910 100232153 -21025377 - URR1A DNA MER1_type 0 226 3 4 1349 783 299 122 10 chr12 100232437 100232822 -21024708 - MER95 LTR ERV 0 431 4 4 1349 396 311 0 48 chr12 100233959 100234128 -21023402 + MER44C DNA MER2_type 5 163 -570 4 1349 347 252 38 45 chr12 100234151 100234284 -21023246 + MER44C DNA MER2_type 247 378 -355 4 1349 216 319 62 21 chr12 100234732 100234828 -21022702 + MIRc SINE MIR 141 240 -28 4 1349 2111 174 114 14 chr12 100235207 100235708 -21021822 - RMER4B LTR ERVK -18 567 17 4 1349 506 313 191 22 chr12 100235972 100236292 -21021238 + Tigger7 DNA MER2_type 64 437 -2054 4 1349 467 277 31 0 chr12 100236659 100236789 -21020741 - RMER15 LTR ERVL 0 575 442 4 1349 1665 143 21 10 chr12 100236790 100237080 -21020450 - ORR1B2 LTR MaLR 0 367 75 4 1349 1011 253 178 18 chr12 100237104 100237486 -21020044 - RMER15 LTR ERVL -130 445 3 4 1349 319 176 11 11 chr12 100237800 100237892 -21019638 + CT-rich Low_complexity Low_complexity 1 92 0 4 1349 305 179 0 0 chr12 100237914 100237970 -21019560 + RLTR12A LTR ERVK 14 69 -499 4 1349 4655 110 21 6 chr12 100238024 100238699 -21018831 - Lx4A LINE L1 -2 7056 6372 4 1349 306 0 0 0 chr12 100238699 100238733 -21018797 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1349 985 156 139 0 chr12 100238740 100238920 -21018610 + Lx4A LINE L1 6169 6373 -685 4 1349 277 267 67 65 chr12 100238920 100239249 -21018281 + RLTR12A LTR ERVK 36 303 -56 4 1349 270 341 126 28 chr12 100239447 100239661 -21017869 - MIR SINE MIR -9 253 19 4 1349 232 219 0 45 chr12 100239935 100240002 -21017528 + RMER15 LTR ERVL 507 570 -5 4 1349 297 329 128 8 chr12 100240078 100240335 -21017195 - L2 LINE L2 -1661 1758 1471 4 1349 262 360 13 57 chr12 100241807 100241966 -21015564 - MER63A DNA AcHobo -56 154 3 4 1349 1325 91 27 0 chr12 100242628 100242814 -21014716 + B2_Mm1t SINE B2 1 191 -2 4 1349 279 0 0 0 chr12 100242876 100242907 -21014623 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1349 186 319 121 43 chr12 100242911 100243052 -21014478 - MIRc SINE MIR -108 160 9 4 1349 207 290 0 0 chr12 100243981 100244050 -21013480 + (CCAA)n Simple_repeat Simple_repeat 3 71 0 4 1349 297 0 0 0 chr12 100244168 100244201 -21013329 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1349 678 193 0 16 chr12 100244227 100244348 -21013182 - PB1D9 SINE Alu 0 120 2 4 1349 24 32 0 0 chr12 100244459 100244490 -21013040 + AT_rich Low_complexity Low_complexity 1 31 0 4 1349 204 125 0 0 chr12 100244724 100244756 -21012774 + (TTG)n Simple_repeat Simple_repeat 3 34 0 4 1349 888 116 35 0 chr12 100244782 100244954 -21012576 + CT-rich Low_complexity Low_complexity 3 180 0 4 1349 380 225 41 16 chr12 100244959 100245081 -21012449 - B4A SINE B4 -46 246 122 4 1349 396 59 0 0 chr12 100245406 100245457 -21012073 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1349 232 260 137 0 chr12 100246201 100246274 -21011256 - LTR16A LTR ERVL -368 83 1 4 1349 219 258 15 15 chr12 100246342 100246409 -21011121 + GA-rich Low_complexity Low_complexity 4 70 0 4 1349 369 0 0 0 chr12 100246485 100246526 -21011004 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1349 277 213 0 62 chr12 100246532 100246597 -21010933 - ID4 SINE ID -19 64 4 4 1349 498 138 0 0 chr12 100247267 100247347 -21010183 - MTD LTR MaLR -172 247 168 4 1349 905 252 88 29 chr12 100248282 100248556 -21008974 - B4A SINE B4 -2 290 1 4 1349 298 263 13 0 chr12 100248737 100248813 -21008717 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1349 395 19 0 19 chr12 100250224 100250277 -21007253 + (TAA)n Simple_repeat Simple_repeat 3 54 0 4 1349 804 274 13 77 chr12 100250491 100250761 -21006769 - B4A SINE B4 0 292 42 4 1349 3360 35 5 0 chr12 100250761 100251155 -21006375 + MTA_Mm LTR MaLR 1 396 0 4 1349 804 274 13 77 chr12 100251155 100251196 -21006334 - B4A SINE B4 -251 41 1 4 1349 329 256 0 12 chr12 100251578 100251661 -21005869 + B4A SINE B4 2 83 -209 4 1349 623 239 78 47 chr12 100252028 100252352 -21005178 - ORR1D1 LTR MaLR -81 293 1 4 1349 224 257 25 63 chr12 100252828 100252907 -21004623 + B1F SINE Alu 68 143 -6 4 1349 597 133 0 0 chr12 100253356 100253454 -21004076 + (TC)n Simple_repeat Simple_repeat 1 98 0 4 1349 397 336 16 8 chr12 100253481 100253607 -21003923 + B1F SINE Alu 13 139 -10 4 1349 477 0 0 0 chr12 100253683 100253736 -21003794 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1349 205 156 0 0 chr12 100253984 100254016 -21003514 + CT-rich Low_complexity Low_complexity 2 33 0 4 1349 244 133 16 16 chr12 100254055 100254116 -21003414 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1349 459 271 17 0 chr12 100255009 100255127 -21002403 + MLT1C LTR MaLR 51 170 -297 4 1349 406 334 106 43 chr12 100255129 100255451 -21002079 - MLT1A LTR MaLR -2 372 31 4 1349 788 235 77 39 chr12 100255715 100255923 -21001607 - B3 SINE B2 0 216 1 4 1349 719 181 7 0 chr12 100256260 100256415 -21001115 + (TG)n Simple_repeat Simple_repeat 1 156 0 4 1349 953 256 72 45 chr12 100256415 100256700 -21000830 - B4A SINE B4 0 292 1 4 1349 1263 92 49 0 chr12 100256700 100256884 -21000646 + L1Md_A LINE L1 348 540 -6184 4 1349 874 201 101 20 chr12 100258080 100258278 -20999252 + B3 SINE B2 3 216 0 4 1349 828 131 0 0 chr12 100258448 100258578 -20998952 + B1_Mus1 SINE Alu 12 141 -7 4 1349 402 21 0 0 chr12 100258580 100258627 -20998903 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1349 382 277 76 45 chr12 100259758 100259941 -20997589 + MLT1D LTR MaLR 6 191 -314 4 1349 5862 167 25 12 chr12 100259942 100260998 -20996532 - L1_Mur2 LINE L1 -13 5864 4796 4 1349 427 337 31 31 chr12 100261458 100261654 -20995876 + B4A SINE B4 56 251 -41 4 1349 204 245 0 19 chr12 100261686 100261740 -20995790 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 1349 189 121 0 0 chr12 100261750 100261783 -20995747 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1349 246 345 84 81 chr12 100261974 100262331 -20995199 - ORR1E LTR MaLR -1 358 1 4 1349 199 297 31 15 chr12 100262969 100263034 -20994496 + L4 LINE RTE 1786 1851 -178 4 1349 268 331 69 14 chr12 100263551 100263695 -20993835 - Helitron3Na_Mam RC Helitron -306 180 29 4 1349 238 200 0 0 chr12 100265600 100265650 -20991880 - MTEb LTR MaLR 0 379 330 4 1349 371 336 54 14 chr12 100265747 100265895 -20991635 - MTEb LTR MaLR -83 296 143 4 1349 264 313 24 73 chr12 100266230 100266354 -20991176 - MTEb LTR MaLR -252 127 10 4 1349 22 0 0 0 chr12 100267670 100267692 -20989838 + AT_rich Low_complexity Low_complexity 1 22 0 4 1349 341 202 85 37 chr12 100269107 100269189 -20988341 + PB1D10 SINE Alu 1 86 -31 4 1349 546 200 54 39 chr12 100269119 100269249 -20988281 + ID_B1 SINE B4 91 222 -2 4 168 7932 58 0 22 chr12 100269736 100270738 -20986792 - L1_Mus2 LINE L1 0 6566 5587 4 1350 421 296 92 37 chr12 100272072 100272365 -20985165 + B4 SINE B4 1 274 -18 4 1350 474 304 13 33 chr12 100272659 100272812 -20984718 - RSINE1 SINE B4 -13 152 3 5 1350 1135 273 139 9 chr12 100273246 100273678 -20983852 + MLT1D LTR MaLR 1 488 -17 5 1350 298 250 78 42 chr12 100273839 100273981 -20983549 - MTEa LTR MaLR -3 376 230 5 1350 278 297 47 16 chr12 100274843 100274969 -20982561 + L2b LINE L2 2979 3112 -314 5 1350 845 200 139 5 chr12 100275063 100275264 -20982266 + MTE2b LTR MaLR 1 228 -151 5 1350 382 328 10 61 chr12 100275345 100275543 -20981987 + Lx8 LINE L1 6135 6322 -1151 5 1350 460 276 86 0 chr12 100275849 100276001 -20981529 + Lx8 LINE L1 6341 6505 -968 5 1350 875 266 79 53 chr12 100276019 100276361 -20981169 + Lx8 LINE L1 7121 7471 -2 5 1350 1014 241 5 0 chr12 100276384 100276587 -20980943 + B3 SINE B2 1 204 -12 5 1350 901 159 7 0 chr12 100276596 100276741 -20980789 - B1_Mus1 SINE Alu 0 148 3 5 1350 245 219 67 27 chr12 100276759 100276834 -20980696 + MTE2b LTR MaLR 301 378 -1 5 1350 474 235 183 14 chr12 100277043 100277274 -20980256 + B4A SINE B4 1 270 -22 5 1350 460 81 13 13 chr12 100277275 100277350 -20980180 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1350 23 68 0 0 chr12 100277350 100277394 -20980136 + AT_rich Low_complexity Low_complexity 1 44 0 5 1350 589 238 52 41 chr12 100277394 100277583 -20979947 + B3A SINE B2 1 180 -36 5 1350 28 0 0 0 chr12 100277585 100277613 -20979917 + AT_rich Low_complexity Low_complexity 1 28 0 5 1350 249 281 11 58 chr12 100278805 100278874 -20978656 + LTR33A LTR ERVL 311 375 -145 5 1350 1676 171 35 7 chr12 100278874 100279163 -20978367 - MTC LTR MaLR 0 421 125 5 1350 332 307 56 91 chr12 100279271 100279303 -20978227 - B2_Mm2 SINE B2 -4 191 159 5 1350 207 100 0 0 chr12 100279303 100279333 -20978197 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1350 718 275 14 4 chr12 100279333 100279497 -20978033 - B3A SINE B2 -38 160 2 5 1350 183 339 113 84 chr12 100279703 100279845 -20977685 - MIR SINE MIR -113 149 4 5 1350 261 211 97 14 chr12 100280278 100280350 -20977180 + MIRc SINE MIR 165 242 -26 5 1350 923 300 8 34 chr12 100280700 100280966 -20976564 - B4 SINE B4 -4 288 30 5 1350 1583 256 99 130 chr12 100283560 100283795 -20973735 + RLTR40 LTR ERVK 16 216 -601 5 1350 1221 34 0 20 chr12 100283795 100283945 -20973585 - B1_Mm SINE Alu 0 147 1 5 1350 1583 256 99 130 chr12 100283945 100283987 -20973543 + RLTR40 LTR ERVK 217 230 -587 5 1350 759 214 141 21 chr12 100283987 100284178 -20973352 - B3 SINE B2 -1 215 2 5 1350 1583 256 99 130 chr12 100284178 100284233 -20973297 + RLTR40 LTR ERVK 231 281 -536 5 1350 482 46 15 0 chr12 100284233 100284298 -20973232 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1350 1583 256 99 130 chr12 100284298 100284718 -20972812 + RLTR40 LTR ERVK 282 746 -71 5 1350 252 269 184 54 chr12 100284742 100284927 -20972603 - L2 LINE L2 -956 2463 2255 5 1350 934 268 61 48 chr12 100286480 100286778 -20970752 + L1_Rod LINE L1 5467 5775 -72 5 1350 2339 117 70 3 chr12 100286778 100287122 -20970408 + ORR1B2 LTR MaLR 1 367 0 5 1350 934 268 61 48 chr12 100287122 100287199 -20970331 + L1_Rod LINE L1 5776 5846 -1 5 1350 387 0 0 0 chr12 100287233 100287276 -20970254 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1350 26 30 0 0 chr12 100287493 100287526 -20970004 + AT_rich Low_complexity Low_complexity 1 33 0 5 1350 367 248 148 0 chr12 100287627 100287728 -20969802 - PB1D9 SINE Alu -1 119 4 5 1350 372 43 0 0 chr12 100287776 100287822 -20969708 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1350 984 248 50 0 chr12 100287830 100288032 -20969498 - ID_B1 SINE B4 -4 220 9 5 1350 216 0 0 0 chr12 100289507 100289531 -20967999 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 5 1350 226 300 67 0 chr12 100290179 100290269 -20967261 - MIRb SINE MIR -69 199 104 5 1350 541 220 9 0 chr12 100293145 100293254 -20964276 - PB1D10 SINE Alu -7 110 1 5 1350 418 333 111 0 chr12 100293447 100293618 -20963912 + MLT2D LTR ERVL 1 190 -366 5 1350 2269 87 132 11 chr12 100293620 100293968 -20963562 - RLTR10 LTR ERVK 0 390 1 5 1350 506 251 3 42 chr12 100293982 100294139 -20963391 + MLT2D LTR ERVL 414 561 -2 5 1350 313 361 74 0 chr12 100294341 100294463 -20963067 - MLT1A LTR MaLR -243 131 1 5 1350 288 0 0 0 chr12 100294797 100294829 -20962701 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1350 489 229 20 7 chr12 100294848 100294963 -20962567 - B3A SINE B2 -68 130 18 5 1350 237 83 0 0 chr12 100295100 100295136 -20962394 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 5 1350 825 316 70 38 chr12 100295249 100295694 -20961836 + Lx8 LINE L1 7009 7467 -6 5 1350 357 24 0 0 chr12 100296465 100296507 -20961023 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1350 1002 265 48 26 chr12 100296510 100296820 -20960710 - MTE-int LTR MaLR -54 1526 1210 5 1350 701 277 66 45 chr12 100296822 100296989 -20960541 + MTE-int LTR MaLR 820 987 -593 5 1350 1172 174 9 35 chr12 100296989 100297221 -20960309 + URR1A DNA MER1_type 1 226 0 5 1350 701 277 66 45 chr12 100297221 100297295 -20960235 + MTE-int LTR MaLR 988 1066 -514 5 1350 1814 102 28 145 chr12 100297273 100297673 -20959857 + ORR1B1 LTR MaLR 42 394 0 5 1350 588 319 12 6 chr12 100297676 100297840 -20959690 + MTE-int LTR MaLR 1035 1199 -381 5 1350 185 244 103 0 chr12 100298522 100298600 -20958930 - L3 LINE CR1 -3699 790 705 5 1350 201 39 0 0 chr12 100298854 100298880 -20958650 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 5 1350 318 148 0 0 chr12 100299542 100299596 -20957934 + (ATG)n Simple_repeat Simple_repeat 3 56 0 5 1350 273 336 25 16 chr12 100299893 100300014 -20957516 + MLT1I LTR MaLR 290 411 0 5 1350 346 332 90 69 chr12 100300024 100300257 -20957273 - MIR SINE MIR -12 250 13 5 1350 258 32 0 0 chr12 100301067 100301098 -20956432 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1350 985 306 92 47 chr12 100303056 100304092 -20953438 + L1MB8 LINE L1 5085 6168 -10 5 1350 312 332 66 115 chr12 100304181 100304467 -20953063 + MLT1J LTR MaLR 130 401 -111 5 1350 459 0 0 0 chr12 100304468 100304519 -20953011 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1350 441 209 206 52 chr12 100304520 100304565 -20952965 - B4A SINE B4 -22 270 233 5 1350 336 24 0 0 chr12 100304565 100304606 -20952924 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 5 1350 441 209 206 52 chr12 100304606 100304696 -20952834 - B4A SINE B4 -60 232 116 5 1350 427 267 103 0 chr12 100305633 100305749 -20951781 - B4A SINE B4 -164 128 1 5 1350 375 330 9 18 chr12 100305766 100305877 -20951653 - PB1D9 SINE Alu -2 118 9 5 1350 287 205 106 24 chr12 100305891 100305976 -20951554 + MLT1J LTR MaLR 411 502 -10 5 1350 25 0 0 0 chr12 100306160 100306185 -20951345 + AT_rich Low_complexity Low_complexity 1 25 0 5 1350 1372 222 57 0 chr12 100306265 100306562 -20950968 - MTE2b LTR MaLR -63 316 3 5 1350 257 336 18 0 chr12 100307526 100307636 -20949894 + MIR SINE MIR 111 222 -40 5 1350 606 207 63 60 chr12 100307703 100307884 -20949646 - B3 SINE B2 -9 184 2 5 1350 319 314 58 83 chr12 100308703 100308943 -20948587 + MLT1K LTR MaLR 159 392 -203 5 1350 403 235 0 22 chr12 100309828 100310011 -20947519 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1350 1194 153 109 0 chr12 100310167 100310369 -20947161 + URR1A DNA MER1_type 2 225 -1 5 1350 257 286 119 125 chr12 100311163 100311272 -20946258 - MLT1D LTR MaLR -293 334 229 5 1350 1299 148 54 5 chr12 100311272 100311476 -20946054 - B3 SINE B2 -2 214 1 5 1350 444 240 154 54 chr12 100311476 100311702 -20945828 - MLT1D LTR MaLR -399 228 1 5 1350 21 57 0 0 chr12 100311881 100311916 -20945614 + AT_rich Low_complexity Low_complexity 1 35 0 5 1350 960 293 121 30 chr12 100312175 100312615 -20944915 - RMER5 LTR ERV1 -7 527 48 5 1350 267 31 0 0 chr12 100312641 100312673 -20944857 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1350 494 248 31 31 chr12 100312691 100312820 -20944710 - RSINE1 SINE B4 -35 130 2 5 1350 180 125 0 0 chr12 100312907 100312939 -20944591 + (GGAGA)n Simple_repeat Simple_repeat 4 35 0 5 1350 994 231 15 5 chr12 100313122 100313322 -20944208 + ID_B1 SINE B4 21 222 -2 5 1350 293 179 18 0 chr12 100313861 100313917 -20943613 + MIRc SINE MIR 99 155 -113 5 1350 471 292 220 39 chr12 100314088 100314419 -20943111 - L1MB8 LINE L1 -39 6139 5749 5 1350 495 329 84 77 chr12 100314606 100314879 -20942651 + RMER15 LTR ERVL 299 573 -2 5 1350 503 278 148 14 chr12 100315088 100315365 -20942165 - L1MB8 LINE L1 -612 5572 5259 5 1350 994 266 156 48 chr12 100315984 100316906 -20940624 - L1MB8 LINE L1 -908 5238 4218 5 1350 1452 250 81 56 chr12 100317518 100318039 -20939491 + RMER5 LTR ERV1 1 534 0 5 1350 414 283 133 0 chr12 100319423 100319543 -20937987 - MLT1G1 LTR MaLR -28 551 416 5 1350 1849 225 48 45 chr12 100319567 100320051 -20937479 - RCHARR1 DNA MER1_type -21 953 469 5 1350 1000 113 7 0 chr12 100320055 100320196 -20937334 + B1_Mus1 SINE Alu 1 142 -6 5 1350 433 298 123 88 chr12 100320228 100320545 -20936985 - MLT1G1 LTR MaLR -268 327 2 5 1350 482 109 11 0 chr12 100320568 100320660 -20936870 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 1350 840 191 20 0 chr12 100320680 100320827 -20936703 + B1_Mur4 SINE Alu 1 150 0 5 1350 699 139 0 0 chr12 100321080 100321195 -20936335 + (GA)n Simple_repeat Simple_repeat 2 116 0 5 1350 190 278 254 48 chr12 100321335 100321524 -20936006 + MIRm SINE MIR 7 234 -42 5 1350 1490 223 96 6 chr12 100323775 100324109 -20933421 + MTE2b LTR MaLR 1 364 -15 5 1350 270 0 0 0 chr12 100324223 100324253 -20933277 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1350 423 264 0 0 chr12 100324254 100324383 -20933147 + (TA)n Simple_repeat Simple_repeat 1 129 0 5 1350 249 128 0 0 chr12 100324549 100324596 -20932934 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1350 988 177 63 15 chr12 100325172 100325378 -20932152 + URR1A DNA MER1_type 1 216 -10 5 1350 315 0 0 0 chr12 100325443 100325478 -20932052 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1350 271 275 24 48 chr12 100326039 100326123 -20931407 + ID4_ SINE ID 1 82 -1 5 1350 739 226 124 16 chr12 100326748 100326941 -20930589 - MTEb LTR MaLR -4 375 162 5 1350 563 279 86 17 chr12 100327096 100327271 -20930259 - B4A SINE B4 -102 190 4 5 1350 529 227 33 8 chr12 100327302 100327422 -20930108 - MTEb LTR MaLR -256 123 1 5 1350 183 42 0 0 chr12 100328060 100328084 -20929446 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 5 1350 1082 133 138 5 chr12 100328440 100328636 -20928894 - URR1A DNA MER1_type -4 222 1 5 1350 427 257 20 10 chr12 100328871 100328973 -20928557 - PB1D10 SINE Alu 0 117 15 5 1350 400 321 10 74 chr12 100329006 100329208 -20928322 + Charlie5 DNA MER1_type 2369 2557 -67 5 1350 1258 82 0 12 chr12 100329251 100329423 -20928107 - B2_Mm2 SINE B2 -25 170 1 5 1350 293 250 12 24 chr12 100329730 100329812 -20927718 - ID4_ SINE ID -1 82 2 5 1350 435 19 0 0 chr12 100329881 100329933 -20927597 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1350 611 292 146 16 chr12 100331983 100332237 -20925293 - B4 SINE B4 -5 287 1 6 1350 264 59 0 0 chr12 100332745 100332779 -20924751 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 6 1350 592 200 82 16 chr12 100333591 100333713 -20923817 + B1F SINE Alu 9 138 -11 6 1350 245 265 14 29 chr12 100334472 100334542 -20922988 - MER117 DNA MER1_type -42 155 87 6 1350 380 264 38 0 chr12 100337052 100337158 -20920372 - PB1D7 SINE Alu -7 113 4 6 1350 976 324 91 8 chr12 100337345 100337743 -20919787 + MLT1D LTR MaLR 65 495 -10 6 1350 314 330 103 9 chr12 100337937 100338053 -20919477 + L1M5 LINE L1 3935 4061 -2085 6 1350 763 339 54 33 chr12 100338165 100338501 -20919029 - MTE2b LTR MaLR -36 343 1 6 1350 405 247 85 42 chr12 100338535 100338700 -20918830 + L1M5 LINE L1 4215 4386 -1760 6 1350 322 248 65 28 chr12 100339711 100339819 -20917711 + L1M5 LINE L1 5571 5682 -558 6 1350 564 285 84 29 chr12 100340221 100340532 -20916998 + L1MCa LINE L1 792 1119 -5389 6 1350 351 303 107 11 chr12 100340536 100340731 -20916799 + MER2 DNA MER2_type 3 219 -126 6 1350 4968 246 81 51 chr12 100340824 100341833 -20915697 + L1MCa LINE L1 3018 4096 -2225 6 1350 748 237 29 6 chr12 100341833 100342007 -20915523 + B3A SINE B2 2 179 -19 6 1350 4968 246 81 51 chr12 100342007 100342871 -20914659 + L1MCa LINE L1 4097 4946 -1375 6 1350 559 258 92 29 chr12 100343008 100343248 -20914282 + L1MCa LINE L1 4962 5216 -1105 6 1350 1919 204 26 47 chr12 100343248 100343292 -20914238 + MTC LTR MaLR 1 42 -379 6 1350 3167 51 10 5 chr12 100343292 100343686 -20913844 + MTA_Mm LTR MaLR 1 396 0 6 1350 1919 204 26 47 chr12 100343686 100344063 -20913467 + MTC LTR MaLR 43 413 -8 6 1350 1059 247 94 10 chr12 100344070 100344501 -20913029 + L1MCa LINE L1 5224 5689 -819 6 1350 245 121 288 0 chr12 100344539 100344605 -20912925 - ORR1D2 LTR MaLR -81 289 205 6 1350 576 130 0 0 chr12 100344612 100344704 -20912826 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 1350 987 200 6 17 chr12 100344704 100344882 -20912648 - ORR1D2 LTR MaLR -194 176 1 6 1350 1661 304 68 39 chr12 100344898 100345851 -20911679 - ORR1D2-int LTR MaLR -394 976 2 6 1350 525 313 82 43 chr12 100345856 100346213 -20911317 - ORR1D2 LTR MaLR -5 365 6 6 1350 514 217 0 34 chr12 100346217 100346336 -20911194 + PB1D9 SINE Alu 5 119 -1 6 1350 211 288 91 65 chr12 100346751 100346914 -20910616 + L2a LINE L2 3199 3413 -13 6 1350 180 348 68 47 chr12 100346881 100347029 -20910501 - MIRb SINE MIR -38 230 80 6 1350 1087 82 7 27 chr12 100347458 100347591 -20909939 + B1_Mus2 SINE Alu 1 134 -13 6 1350 327 25 0 0 chr12 100347591 100347631 -20909899 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 1350 1087 82 7 27 chr12 100347631 100347647 -20909883 + B1_Mus2 SINE Alu 135 147 0 6 1350 472 257 139 50 chr12 100347716 100347896 -20909634 - B3A SINE B2 -2 196 1 6 1350 282 237 17 0 chr12 100348078 100348137 -20909393 - MLT1C LTR MaLR -12 396 337 6 1350 770 320 124 0 chr12 100348628 100348853 -20908677 + B4 SINE B4 22 274 -18 6 1350 315 0 0 0 chr12 100348869 100348904 -20908626 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1350 27 73 0 0 chr12 100348985 100349040 -20908490 + AT_rich Low_complexity Low_complexity 1 55 0 6 1350 180 125 0 0 chr12 100349041 100349073 -20908457 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 1350 652 151 38 0 chr12 100349078 100349184 -20908346 - B1_Mus2 SINE Alu -5 142 33 6 1350 441 95 0 0 chr12 100349199 100349262 -20908268 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 6 1350 1159 183 19 14 chr12 100349276 100349487 -20908043 - B3 SINE B2 -1 215 4 6 1350 1484 195 33 7 chr12 100349822 100350122 -20907408 + MTD LTR MaLR 1 308 -111 6 1350 283 291 52 83 chr12 100350176 100350359 -20907171 + MTEb LTR MaLR 169 377 -2 6 1350 648 252 84 40 chr12 100350359 100350577 -20906953 - MLT1C LTR MaLR -216 251 24 6 1350 318 350 182 16 chr12 100351440 100351748 -20905782 + L2a LINE L2 3055 3413 -13 6 1350 423 327 26 116 chr12 100352139 100352329 -20905201 - MLT1C LTR MaLR 0 467 295 6 1350 413 252 9 83 chr12 100352529 100352678 -20904852 + B4A SINE B4 146 290 -2 6 1350 189 147 0 0 chr12 100352683 100352717 -20904813 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1350 2122 181 83 0 chr12 100353036 100353423 -20904107 - MTD LTR MaLR 0 419 1 6 1350 658 200 18 6 chr12 100353661 100353827 -20903703 + (CATATA)n Simple_repeat Simple_repeat 2 169 0 6 1350 662 242 172 4 chr12 100353870 100354114 -20903416 - B4A SINE B4 -7 285 1 6 1350 262 164 115 0 chr12 100355214 100355275 -20902255 - B2_Mm2 SINE B2 -125 70 3 6 1350 437 293 25 45 chr12 100355445 100355602 -20901928 - MER5B DNA MER1_type -22 156 3 6 1350 228 300 44 11 chr12 100355814 100355905 -20901625 + L1M5 LINE L1 5736 5829 -411 6 1350 352 252 104 104 chr12 100356142 100356306 -20901224 + RSINE1 SINE B4 1 164 -1 6 1350 467 248 201 7 chr12 100357121 100357275 -20900255 + MTE2b LTR MaLR 4 187 -192 6 1350 583 212 9 26 chr12 100357286 100357402 -20900128 + MTE2b LTR MaLR 264 377 -2 6 1350 296 181 0 27 chr12 100357870 100357944 -20899586 + GA-rich Low_complexity Low_complexity 6 77 0 6 1350 258 316 67 17 chr12 100358192 100358311 -20899219 - MER5A DNA MER1_type -51 138 14 6 1350 778 299 59 11 chr12 100358993 100359264 -20898266 + B4A SINE B4 3 286 -6 6 1350 201 121 0 0 chr12 100359289 100359322 -20898208 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1350 448 262 82 33 chr12 100359406 100359558 -20897972 - ID_B1 SINE B4 -130 162 9 6 1350 742 277 14 5 chr12 100359617 100359831 -20897699 - B3 SINE B2 0 216 1 6 1350 1024 168 53 48 chr12 100359917 100360123 -20897407 + B3 SINE B2 6 212 -4 6 1350 1219 229 30 134 chr12 100361034 100361437 -20896093 - MTE2a LTR MaLR -18 361 1 6 1350 233 399 23 0 chr12 100361743 100361876 -20895654 + RMER15 LTR ERVL 372 507 -68 6 1350 338 171 0 14 chr12 100362776 100362847 -20894683 + CT-rich Low_complexity Low_complexity 1 70 0 6 1350 289 311 71 32 chr12 100362847 100362867 -20894663 - MT2B LTR ERVL -316 285 212 6 1350 357 206 151 11 chr12 100362867 100362960 -20894570 - B1_Mur1 SINE Alu -41 108 3 6 1350 289 311 71 32 chr12 100362960 100362973 -20894557 - MT2B LTR ERVL -316 211 155 6 1350 325 327 9 18 chr12 100362961 100363070 -20894460 - MLT1A1 LTR MaLR -10 398 291 6 1350 675 240 52 0 chr12 100363497 100363651 -20893879 + RSINE1 SINE B4 4 165 0 6 1350 391 115 42 0 chr12 100364346 100364442 -20893088 + (TAGA)n Simple_repeat Simple_repeat 4 103 0 6 1350 880 126 97 7 chr12 100364494 100364638 -20892892 - B2_Mm2 SINE B2 -36 159 3 6 1350 396 0 0 0 chr12 100365083 100365127 -20892403 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 6 1350 466 304 157 53 chr12 100365446 100365714 -20891816 + LTR48B LTR ERV1 236 527 -117 6 1350 600 14 0 0 chr12 100365714 100365783 -20891747 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 1350 447 19 0 0 chr12 100365784 100365836 -20891694 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1350 466 304 157 53 chr12 100365836 100365902 -20891628 + LTR48B LTR ERV1 528 605 -39 6 1350 353 300 51 29 chr12 100366075 100366250 -20891280 + L1ME3A LINE L1 5984 6162 -11 6 1350 464 175 58 124 chr12 100366258 100366395 -20891135 + B1_Mur1 SINE Alu 1 128 -21 6 1350 356 240 10 0 chr12 100366397 100366497 -20891033 + GA-rich Low_complexity Low_complexity 2 102 0 6 1350 875 188 33 116 chr12 100366586 100366827 -20890703 - URR1A DNA MER1_type -4 222 2 6 1350 370 303 10 0 chr12 100366999 100367098 -20890432 + PB1D10 SINE Alu 2 101 -16 6 1350 270 114 68 0 chr12 100367429 100367473 -20890057 - ORR1E LTR MaLR 0 379 333 6 1350 891 242 10 20 chr12 100367503 100367705 -20889825 - ORR1E LTR MaLR -156 203 4 6 1350 392 207 11 11 chr12 100368844 100368932 -20888598 - ORR1E LTR MaLR -213 146 59 6 1350 342 0 0 0 chr12 100369242 100369280 -20888250 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1350 477 243 10 10 chr12 100369309 100369413 -20888117 + B1_Mus1 SINE Alu 24 127 -21 6 1350 426 88 0 0 chr12 100369413 100369481 -20888049 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1350 470 31 0 15 chr12 100369494 100369559 -20887971 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6 1350 263 227 44 29 chr12 100369786 100369854 -20887676 - RSINE1 SINE B4 -95 70 2 6 1350 708 242 108 0 chr12 100369854 100370047 -20887483 - MLT1B LTR MaLR -167 223 10 6 1350 272 273 112 31 chr12 100370817 100371028 -20886502 - ORR1E LTR MaLR -79 247 25 6 1350 211 276 99 87 chr12 100371209 100371275 -20886255 - L2 LINE L2 -368 3051 3001 6 1350 569 105 0 45 chr12 100371275 100371385 -20886145 + L1Md_F2 LINE L1 6478 6582 0 6 1350 211 276 99 87 chr12 100371385 100371560 -20885970 - L2 LINE L2 -419 3000 2808 6 1350 189 0 0 0 chr12 100371826 100371847 -20885683 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1350 588 14 0 0 chr12 100371847 100371915 -20885615 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1350 271 302 45 94 chr12 100372141 100372342 -20885188 - MIRb SINE MIR -32 236 46 6 1350 207 0 0 0 chr12 100373306 100373329 -20884201 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1350 1217 216 73 72 chr12 100373521 100373915 -20883615 + Lx9 LINE L1 6098 6635 -1009 6 1350 315 0 0 0 chr12 100373931 100373966 -20883564 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 6 1350 1640 226 157 27 chr12 100373969 100374562 -20882968 - Lx9 LINE L1 -185 7459 6790 6 1350 504 0 0 0 chr12 100374636 100374692 -20882838 + (CTG)n Simple_repeat Simple_repeat 2 57 0 6 1350 891 143 0 0 chr12 100374693 100374826 -20882704 - B1_Mus1 SINE Alu -11 137 5 6 1350 1787 23 5 5 chr12 100374890 100375107 -20882423 + L1Md_F2 LINE L1 6366 6582 0 6 1350 1319 246 67 44 chr12 100375132 100375493 -20882037 - MTE2a LTR MaLR 0 379 11 6 1350 570 258 92 11 chr12 100375706 100375890 -20881640 + B3 SINE B2 3 201 -15 6 1350 312 48 0 0 chr12 100375905 100375947 -20881583 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1350 197 438 16 47 chr12 100375986 100376113 -20881417 + L2b LINE L2 3230 3352 -23 6 1350 585 211 0 9 chr12 100376204 100376319 -20881211 + B1F SINE Alu 3 116 -33 6 1350 22 35 0 0 chr12 100376563 100376592 -20880938 + AT_rich Low_complexity Low_complexity 1 29 0 6 1350 401 148 58 23 chr12 100376627 100376800 -20880730 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 1350 1355 215 197 20 chr12 100378664 100379020 -20878510 - MTD LTR MaLR 0 419 1 6 1350 230 263 128 92 chr12 100379116 100379225 -20878305 - PB1D7 SINE Alu -7 113 1 6 1350 189 0 0 0 chr12 100379308 100379329 -20878201 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1350 387 0 0 0 chr12 100379329 100379371 -20878159 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1350 518 233 0 6 chr12 100379515 100379696 -20877834 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1350 674 184 6 0 chr12 100379715 100379894 -20877636 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1350 276 30 0 0 chr12 100380150 100380183 -20877347 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1350 38575 30 0 0 chr12 100380215 100386873 -20870657 - L1Md_T LINE L1 0 6585 1 7 1350 1250 246 21 115 chr12 100387254 100387393 -20870137 + MTE2a LTR MaLR 1 113 -266 7 1350 1517 212 88 3 chr12 100387393 100387733 -20869797 - ORR1D2 LTR MaLR -1 369 1 7 1350 1250 246 21 115 chr12 100387733 100388011 -20869519 + MTE2a LTR MaLR 114 379 0 7 1350 336 255 50 30 chr12 100389032 100389133 -20868397 - MER5B DNA MER1_type -75 103 1 7 1350 225 0 0 0 chr12 100389319 100389344 -20868186 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1350 867 142 33 22 chr12 100390153 100390342 -20867188 - B3 SINE B2 0 195 1 7 1350 489 293 62 41 chr12 100390343 100390489 -20867041 - ID_B1 SINE B4 0 224 76 7 1350 288 0 0 0 chr12 100390685 100390717 -20866813 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 7 1350 1318 89 33 0 chr12 100390717 100390897 -20866633 + B2_Mm1t SINE B2 4 189 -4 7 1350 1133 140 52 82 chr12 100391322 100391555 -20865975 + URR1A DNA MER1_type 1 226 0 7 1350 396 59 0 0 chr12 100393022 100393073 -20864457 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1350 619 299 48 26 chr12 100393086 100393315 -20864215 - B4A SINE B4 -39 253 20 7 1350 2298 142 26 26 chr12 100393315 100393637 -20863893 - ORR1C1 LTR MaLR -1 377 48 7 1350 1872 159 57 36 chr12 100393637 100394023 -20863507 - ORR1B1 LTR MaLR 0 394 1 7 1350 2298 142 26 26 chr12 100394023 100394077 -20863453 - ORR1C1 LTR MaLR -331 47 1 7 1350 830 294 90 8 chr12 100394137 100394404 -20863126 - MTE2b-int LTR MaLR -562 1018 730 7 1350 2233 248 118 29 chr12 100394554 100395240 -20862290 - MTE2b-int LTR MaLR -833 747 1 7 1350 1242 238 88 41 chr12 100395312 100395654 -20861876 - MTE2b LTR MaLR -21 358 1 7 1350 199 383 9 18 chr12 100396305 100396414 -20861116 + L2a LINE L2 2917 3024 -351 7 1350 939 183 5 62 chr12 100396505 100396697 -20860833 + B3A SINE B2 2 182 -16 7 1350 296 355 0 26 chr12 100396765 100396878 -20860652 + L2a LINE L2 3293 3402 -24 7 1350 451 195 0 0 chr12 100398104 100398181 -20859349 - ID_B1 SINE B4 -11 213 137 7 1350 235 227 34 148 chr12 100398181 100398192 -20859338 - PB1D9 SINE Alu -11 109 32 7 1350 371 331 12 89 chr12 100398663 100398832 -20858698 + MLT1N2 LTR MaLR 44 199 -363 7 1350 314 200 22 66 chr12 100398864 100398955 -20858575 + B4 SINE B4 2 88 -204 7 1350 312 182 168 20 chr12 100399028 100399129 -20858401 - PB1D10 SINE Alu -1 116 1 7 1350 350 342 54 0 chr12 100399499 100399610 -20857920 - RSINE1 SINE B4 -9 156 40 7 1351 721 323 86 13 chr12 100402122 100402517 -20855013 - L1MA4A LINE L1 -398 5905 5482 7 1351 313 264 78 62 chr12 100403363 100403426 -20854104 - L1MEg LINE L1 -4140 1944 1884 7 1351 909 158 27 0 chr12 100403426 100403572 -20853958 - B1_Mur4 SINE Alu 0 150 1 7 1351 313 264 78 62 chr12 100403572 100403637 -20853893 - L1MEg LINE L1 -4201 1883 1814 7 1351 743 135 59 35 chr12 100403670 100403852 -20853678 + B2_Mm2 SINE B2 13 192 -1 7 1351 294 221 59 0 chr12 100403980 100404048 -20853482 - MER117 DNA MER1_type -49 148 77 7 1351 573 253 114 30 chr12 100404895 100405062 -20852468 - MER2 DNA MER2_type -1 344 164 7 1351 339 25 0 0 chr12 100405297 100405337 -20852193 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1351 237 245 53 11 chr12 100405392 100405487 -20852043 + L1ME4a LINE L1 6020 6118 -6 7 1351 689 186 155 0 chr12 100405694 100405823 -20851707 + B1_Mur1 SINE Alu 1 149 0 7 1351 207 25 49 24 chr12 100405829 100405870 -20851660 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 7 1351 525 301 0 46 chr12 100405964 100406117 -20851413 - ID_B1 SINE B4 0 224 79 7 1351 307 255 176 39 chr12 100406382 100406484 -20851046 + PB1D10 SINE Alu 1 116 -1 7 1351 312 120 0 0 chr12 100406513 100406563 -20850967 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1351 907 227 76 22 chr12 100407663 100407912 -20849618 - MTEa LTR MaLR 0 379 111 7 1351 1350 131 28 5 chr12 100407939 100408153 -20849377 + URR1B DNA MER1_type 1 219 -6 7 1351 374 187 67 0 chr12 100408170 100408245 -20849285 - MTEa LTR MaLR -299 80 1 7 1351 363 212 0 0 chr12 100408766 100408832 -20848698 - PB1D9 SINE Alu -54 66 1 7 1351 603 217 118 22 chr12 100408832 100409011 -20848519 + B3A SINE B2 27 216 0 7 1351 502 197 8 8 chr12 100409024 100409147 -20848383 + GA-rich Low_complexity Low_complexity 2 124 0 7 1351 1010 350 98 55 chr12 100409175 100409903 -20847627 + MER97b DNA MER1_type? 40 798 -255 7 1351 1110 287 29 27 chr12 100409950 100410312 -20847218 + MLT1A0 LTR MaLR 2 465 -2 7 1351 1295 136 14 18 chr12 100410431 100410648 -20846882 + B3 SINE B2 1 216 0 7 1351 180 0 0 0 chr12 100410648 100410668 -20846862 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1351 982 257 9 0 chr12 100410712 100410922 -20846608 + B3 SINE B2 5 216 0 7 1351 689 213 70 55 chr12 100411082 100411281 -20846249 + B3 SINE B2 5 206 -10 7 1351 459 0 0 0 chr12 100411367 100411418 -20846112 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1351 207 0 0 0 chr12 100411418 100411440 -20846090 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1351 618 152 188 0 chr12 100411445 100411557 -20845973 - B1_Mur1 SINE Alu -16 133 1 7 1351 267 54 0 0 chr12 100412029 100412066 -20845464 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1351 663 226 7 55 chr12 100412571 100412716 -20844814 - B1_Mur1 SINE Alu 0 149 12 7 1351 270 266 42 11 chr12 100412801 100412896 -20844634 + ID_B1 SINE B4 104 201 -23 7 1351 255 93 0 0 chr12 100412896 100412939 -20844591 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1351 487 314 0 0 chr12 100414086 100414206 -20843324 + ID_B1 SINE B4 82 201 -23 7 1351 491 303 66 15 chr12 100414206 100414404 -20843126 + B4A SINE B4 4 211 -81 7 1351 321 161 0 0 chr12 100414408 100414495 -20843035 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 7 1351 360 0 0 0 chr12 100414611 100414651 -20842879 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1351 234 0 0 0 chr12 100414651 100414676 -20842854 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1351 261 232 43 0 chr12 100414840 100414909 -20842621 + PB1D10 SINE Alu 40 111 -6 7 1351 629 73 10 0 chr12 100414923 100415019 -20842511 + (GA)n Simple_repeat Simple_repeat 2 98 0 7 1351 312 248 170 73 chr12 100415040 100415205 -20842325 + L1MEc LINE L1 1427 1607 -4793 7 1351 398 296 35 69 chr12 100415213 100415329 -20842201 - PB1D10 SINE Alu 0 117 6 7 1351 302 232 183 6 chr12 100415336 100415505 -20842025 + L1MEc LINE L1 1657 1855 -4545 7 1351 1618 32 11 0 chr12 100415531 100415721 -20841809 - B2_Mm1a SINE B2 0 193 2 7 1351 193 320 96 10 chr12 100415853 100415957 -20841573 + MIR SINE MIR 86 198 -64 7 1351 1085 52 8 0 chr12 100415989 100416123 -20841407 + B1_Mm SINE Alu 1 135 -12 7 1351 198 0 0 0 chr12 100416124 100416146 -20841384 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 7 1351 26 0 0 0 chr12 100416152 100416178 -20841352 + AT_rich Low_complexity Low_complexity 1 26 0 7 1351 863 149 0 81 chr12 100416243 100416404 -20841126 - B1_Mur4 SINE Alu 0 150 3 7 1351 945 78 0 0 chr12 100416424 100416540 -20840990 - B2_Mm2 SINE B2 -78 117 2 7 1351 216 293 0 35 chr12 100416698 100416783 -20840747 + GA-rich Low_complexity Low_complexity 4 85 0 7 1351 1141 82 0 0 chr12 100416940 100417086 -20840444 + B1_Mm SINE Alu 2 147 0 7 1351 453 36 0 0 chr12 100417093 100417148 -20840382 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1351 550 222 176 0 chr12 100417171 100417324 -20840206 - B3A SINE B2 -18 180 1 7 1351 2114 159 15 78 chr12 100417389 100417698 -20839832 - ORR1C2 LTR MaLR 0 384 93 7 1351 1555 56 0 10 chr12 100417698 100417895 -20839635 - B2_Mm2 SINE B2 0 195 1 7 1351 2114 159 15 78 chr12 100417895 100417995 -20839535 - ORR1C2 LTR MaLR -292 92 1 7 1351 573 192 61 71 chr12 100418079 100418275 -20839255 - MER33 DNA MER1_type -27 297 104 7 1351 1157 266 17 56 chr12 100418277 100418564 -20838966 + B4 SINE B4 17 292 0 7 1351 375 269 23 78 chr12 100418662 100418791 -20838739 - MIRb SINE MIR -71 197 76 7 1351 1185 208 6 6 chr12 100419716 100420049 -20837481 + (TCCA)n Simple_repeat Simple_repeat 1 333 0 7 1351 575 258 59 29 chr12 100420086 100420222 -20837308 - ORR1E LTR MaLR -211 148 9 7 1351 989 283 7 36 chr12 100421038 100421313 -20836217 - B4A SINE B4 0 292 26 7 1351 1514 63 16 0 chr12 100421355 100421544 -20835986 + B2_Mm2 SINE B2 2 193 -2 7 1351 249 290 117 11 chr12 100421835 100421929 -20835601 - MTEb LTR MaLR -4 375 272 7 1351 436 247 10 87 chr12 100421957 100422152 -20835378 + GA-rich Low_complexity Low_complexity 1 180 0 7 1351 463 146 39 0 chr12 100422198 100422328 -20835202 + (TG)n Simple_repeat Simple_repeat 1 135 0 7 1351 226 297 44 59 chr12 100422445 100422513 -20835017 - ORR1E LTR MaLR -292 67 1 7 1351 537 205 0 38 chr12 100422570 100422697 -20834833 + PB1D9 SINE Alu 2 120 0 7 1351 792 198 61 114 chr12 100422703 100422931 -20834599 - B3 SINE B2 0 216 1 7 1351 188 311 42 62 chr12 100423032 100423128 -20834402 - L2 LINE L2 -548 2871 2778 7 1351 1208 228 53 103 chr12 100423181 100423558 -20833972 + MTE2a LTR MaLR 19 376 -3 7 1351 246 325 103 26 chr12 100423806 100423923 -20833607 - ID_B1 SINE B4 -49 175 50 7 1351 198 383 38 23 chr12 100424287 100424418 -20833112 + MIR3 SINE MIR 54 186 -22 7 1351 430 222 43 77 chr12 100425017 100425134 -20832396 + PB1D9 SINE Alu 2 114 -6 7 1351 315 297 55 0 chr12 100425420 100425511 -20832019 + SSU-rRNA_Hsa rRNA rRNA 1171 1266 -603 7 1351 1062 221 5 0 chr12 100425512 100425702 -20831828 + B3 SINE B2 20 210 -6 7 1351 854 124 71 21 chr12 100425730 100425870 -20831660 + B1_Mus1 SINE Alu 2 148 0 7 1351 210 324 0 14 chr12 100425906 100425978 -20831552 + (CATA)n Simple_repeat Simple_repeat 4 74 0 8 1351 1001 109 7 0 chr12 100426189 100426326 -20831204 + B1_Mur3 SINE Alu 2 139 -10 8 1351 414 0 0 0 chr12 100426326 100426372 -20831158 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 8 1351 311 283 5 175 chr12 100426679 100426902 -20830628 + MLT1A1 LTR MaLR 20 204 -204 8 1351 536 264 172 34 chr12 100427290 100427494 -20830036 + B4A SINE B4 2 233 -59 8 1351 425 305 45 30 chr12 100427490 100427622 -20829908 + B3A SINE B2 48 181 -17 8 1351 3112 163 15 54 chr12 100427622 100428212 -20829318 + RLTR20D LTR ERVK 2 568 0 8 1351 205 311 136 0 chr12 100429085 100429188 -20828342 + L3 LINE CR1 3562 3678 -811 8 1351 189 0 0 0 chr12 100429690 100429711 -20827819 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 8 1351 27 62 0 0 chr12 100429830 100429878 -20827652 + AT_rich Low_complexity Low_complexity 1 48 0 8 1351 212 0 36 0 chr12 100431806 100431834 -20825696 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 8 1351 243 88 0 0 chr12 100432284 100432318 -20825212 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1351 378 187 0 0 chr12 100432928 100433019 -20824511 + A-rich Low_complexity Low_complexity 1 91 0 8 1351 255 125 0 0 chr12 100433172 100433212 -20824318 + (T)n Simple_repeat Simple_repeat 1 40 0 8 1351 255 125 0 0 chr12 100433614 100433654 -20823876 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1351 319 297 74 52 chr12 100434263 100434398 -20823132 + L1MD LINE L1 3068 3205 -2941 8 1351 212 284 129 60 chr12 100435571 100435687 -20821843 - MIRm SINE MIR -100 176 53 8 1351 270 275 24 32 chr12 100436590 100436714 -20820816 - RSINE1 SINE B4 0 165 43 8 1351 236 325 18 42 chr12 100438718 100438885 -20818645 + L1MEf LINE L1 618 780 -5356 8 1351 443 253 11 0 chr12 100438972 100439074 -20818456 + PB1D10 SINE Alu 4 107 -10 8 1351 372 336 16 8 chr12 100439180 100439306 -20818224 + B4A SINE B4 71 197 -95 8 1351 447 259 43 8 chr12 100439329 100439446 -20818084 + ID_B1 SINE B4 102 222 -2 8 1351 336 291 150 26 chr12 100439488 100439683 -20817847 + L1MEf LINE L1 1160 1376 -4866 8 1351 267 304 65 11 chr12 100439763 100439856 -20817674 + PB1 SINE Alu 1 98 -29 8 1351 285 283 84 9 chr12 100440020 100440127 -20817403 + L1MEf LINE L1 1612 1726 -4440 8 1351 1103 93 0 0 chr12 100440460 100440599 -20816931 + B1_Mus2 SINE Alu 1 139 -8 8 1351 215 31 31 0 chr12 100440599 100440631 -20816899 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 8 1351 228 285 86 71 chr12 100440856 100440996 -20816534 + L1MEf LINE L1 2424 2565 -3581 8 1351 393 22 0 0 chr12 100441010 100441056 -20816474 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1351 229 224 13 26 chr12 100441332 100441410 -20816120 + L1MEf LINE L1 2854 2930 -3216 8 1351 641 148 276 21 chr12 100441515 100441660 -20815870 + B3A SINE B2 1 182 -16 8 1351 271 353 110 16 chr12 100441745 100442128 -20815402 + L1MEf LINE L1 3260 3678 -2468 8 1351 378 208 180 40 chr12 100442443 100442543 -20814987 - PB1D10 SINE Alu 0 117 4 8 1351 519 248 31 16 chr12 100442719 100442740 -20814790 + B3 SINE B2 77 99 -117 8 1351 243 0 0 0 chr12 100442740 100442767 -20814763 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 8 1351 519 248 31 16 chr12 100442767 100442872 -20814658 + B3 SINE B2 100 205 -11 8 1351 288 0 0 0 chr12 100442879 100442911 -20814619 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 8 1351 729 146 44 44 chr12 100443589 100443725 -20813805 - B1_Mur4 SINE Alu -13 137 2 8 1351 197 59 59 0 chr12 100443809 100443843 -20813687 + (CACAA)n Simple_repeat Simple_repeat 4 39 0 8 1351 538 302 16 0 chr12 100444534 100444660 -20812870 + RSINE1 SINE B4 3 130 -35 8 1351 448 303 89 13 chr12 100444698 100444855 -20812675 + B3 SINE B2 10 178 -38 8 1351 228 35 0 0 chr12 100444866 100444895 -20812635 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1351 285 128 0 0 chr12 100446060 100446107 -20811423 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1351 394 152 152 57 chr12 100446126 100446231 -20811299 + MTE2a LTR MaLR 265 379 0 8 1351 927 73 0 0 chr12 100446260 100446384 -20811146 + (GAAA)n Simple_repeat Simple_repeat 2 125 0 8 1351 891 285 60 30 chr12 100446636 100447002 -20810528 + MTE2a LTR MaLR 1 377 -2 8 1351 215 315 104 35 chr12 100447323 100447438 -20810092 - MIRb SINE MIR -55 213 91 8 1351 356 286 184 28 chr12 100448076 100448298 -20809232 + B4A SINE B4 2 281 -11 8 1351 620 262 80 18 chr12 100449290 100449453 -20808077 + ID_B1 SINE B4 2 174 -50 8 1351 496 269 26 39 chr12 100449592 100449747 -20807783 - RSINE1 SINE B4 -9 156 4 8 1351 410 338 79 29 chr12 100450137 100450414 -20807116 + L1M5 LINE L1 4715 5005 -1141 8 1351 866 209 317 14 chr12 100450994 100451275 -20806255 + ORR1D2 LTR MaLR 1 366 -4 8 1351 272 215 15 15 chr12 100452067 100452133 -20805397 + MIRb SINE MIR 165 230 -38 8 1351 2491 136 57 12 chr12 100452763 100453165 -20804365 + MTC LTR MaLR 1 420 -1 8 1351 287 279 210 14 chr12 100453542 100453680 -20803850 - B4A SINE B4 -123 169 5 8 1351 790 181 43 0 chr12 100455224 100455362 -20802168 + B1_Mus1 SINE Alu 2 145 -3 8 1351 466 276 106 31 chr12 100455809 100455970 -20801560 + ID_B1 SINE B4 48 220 -4 8 1351 420 245 0 31 chr12 100460065 100460162 -20797368 + Tigger7 DNA MER2_type 2398 2491 0 8 1351 264 259 144 51 chr12 100461413 100461552 -20795978 + MIRc SINE MIR 9 156 -52 8 1351 230 106 21 0 chr12 100461899 100461946 -20795584 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 8 1351 1095 208 132 55 chr12 100462523 100462924 -20794606 - RMER10A LTR ERVL -10 432 1 8 1351 431 229 0 59 chr12 100463162 100463264 -20794266 + MER20 DNA MER1_type 4 99 -120 8 1351 520 242 7 50 chr12 100463964 100464103 -20793427 + B1F2 SINE Alu 12 144 -5 8 1351 278 268 55 129 chr12 100464146 100464309 -20793221 + B4A SINE B4 24 174 -118 8 1351 21 36 0 0 chr12 100464416 100464444 -20793086 + AT_rich Low_complexity Low_complexity 1 28 0 8 1351 680 200 102 91 chr12 100466145 100466332 -20791198 + B2_Mm2 SINE B2 7 195 0 8 1351 432 0 0 0 chr12 100466366 100466414 -20791116 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 1351 189 0 0 0 chr12 100466414 100466434 -20791096 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1351 207 0 0 0 chr12 100467453 100467476 -20790054 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 8 1351 203 0 37 0 chr12 100468002 100468029 -20789501 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1351 299 328 55 64 chr12 100468965 100469183 -20788347 + B4A SINE B4 2 217 -75 8 1351 230 190 0 23 chr12 100469318 100469361 -20788169 + B1F2 SINE Alu 17 58 -91 8 1351 617 165 0 18 chr12 100469390 100469501 -20788029 + B1_Mus2 SINE Alu 39 147 0 8 1351 252 0 0 0 chr12 100469534 100469562 -20787968 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1351 299 278 156 16 chr12 100469568 100469696 -20787834 + ID_B1 SINE B4 77 222 -2 8 1351 234 0 0 0 chr12 100469853 100469879 -20787651 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1351 195 69 0 0 chr12 100469988 100470017 -20787513 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1351 330 273 75 48 chr12 100470019 100470165 -20787365 + RSINE1 SINE B4 2 151 -14 8 1351 423 272 160 39 chr12 100470898 100471154 -20786376 + B4A SINE B4 2 288 -4 8 1351 186 133 0 0 chr12 100471205 100471235 -20786295 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1351 379 250 21 61 chr12 100472464 100472602 -20784928 + ID_B1 SINE B4 32 204 -20 8 1351 288 0 0 0 chr12 100473513 100473545 -20783985 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 8 1351 340 304 55 5 chr12 100474575 100474709 -20782821 + MIRb SINE MIR 55 191 -77 8 1351 192 40 0 0 chr12 100475450 100475475 -20782055 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1351 631 270 67 39 chr12 100475503 100475753 -20781777 + B4 SINE B4 8 275 -17 8 1351 319 336 99 33 chr12 100475844 100476087 -20781443 - L1MC4a LINE L1 -1959 5923 5665 8 1351 211 236 40 53 chr12 100476124 100476200 -20781330 + MIR3 SINE MIR 112 186 -22 8 1351 246 301 0 14 chr12 100476589 100476663 -20780867 + MIR SINE MIR 105 177 -85 8 1351 436 341 40 0 chr12 100477059 100477185 -20780345 + MIR SINE MIR 12 142 -120 8 1351 204 121 29 43 chr12 100477298 100477367 -20780163 + (CAGA)n Simple_repeat Simple_repeat 4 71 0 8 1351 216 0 0 0 chr12 100479209 100479233 -20778297 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 8 1351 830 99 0 47 chr12 100479388 100479515 -20778015 - B1_Mus2 SINE Alu 0 147 27 8 1351 23 33 0 0 chr12 100479515 100479545 -20777985 + AT_rich Low_complexity Low_complexity 1 30 0 8 1351 694 262 51 62 chr12 100479872 100480067 -20777463 - ID_B1 SINE B4 -25 199 7 8 1351 541 303 93 58 chr12 100481544 100481920 -20775610 + MLT1B LTR MaLR 1 390 0 8 1351 567 304 38 0 chr12 100483278 100483436 -20774094 - B4A SINE B4 -128 164 1 8 1351 237 330 55 0 chr12 100483455 100483564 -20773966 + L2a LINE L2 3312 3426 0 8 1351 189 0 0 0 chr12 100483843 100483864 -20773666 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1351 316 217 116 0 chr12 100484457 100484526 -20773004 + B4A SINE B4 1 77 -215 8 1351 1270 48 0 0 chr12 100484751 100484898 -20772632 + B1_Mm SINE Alu 1 147 0 8 1351 471 263 101 14 chr12 100487507 100487646 -20769884 + RSINE1 SINE B4 3 153 -12 8 1351 332 325 23 39 chr12 100488186 100488314 -20769216 - MLT1C LTR MaLR -34 433 308 8 1351 261 304 32 11 chr12 100488436 100488529 -20769001 - MLT1C LTR MaLR -295 95 1 8 1351 293 0 27 0 chr12 100488930 100488967 -20768563 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1351 267 196 0 0 chr12 100489878 100489924 -20767606 - B3A SINE B2 -148 50 5 8 1351 1761 271 102 37 chr12 100489998 100491030 -20766500 + L1MD LINE L1 3673 4771 -1375 8 1351 226 191 43 0 chr12 100491290 100491337 -20766193 + ALINE LINE RTE 54 102 -515 8 1351 213 39 0 0 chr12 100493194 100493220 -20764310 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 9 1351 249 211 0 0 chr12 100493220 100493277 -20764253 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1351 303 93 0 0 chr12 100493306 100493349 -20764181 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 9 1351 217 244 0 0 chr12 100493349 100493390 -20764140 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1351 189 107 0 0 chr12 100493419 100493447 -20764083 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 9 1351 213 121 0 0 chr12 100493462 100493495 -20764035 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1351 225 94 0 0 chr12 100493525 100493557 -20763973 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 9 1351 186 133 0 0 chr12 100493558 100493588 -20763942 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1351 225 94 0 0 chr12 100493617 100493649 -20763881 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 9 1351 309 230 0 0 chr12 100493651 100493725 -20763805 + (CA)n Simple_repeat Simple_repeat 2 75 0 9 1351 225 94 0 0 chr12 100493755 100493787 -20763743 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 9 1351 246 174 0 0 chr12 100493788 100493834 -20763696 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1351 678 268 0 103 chr12 100494510 100494714 -20762816 - RMER30 DNA MER1_type -12 190 8 9 1351 351 78 0 0 chr12 100497924 100497975 -20759555 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1351 836 59 0 0 chr12 100499486 100499588 -20757942 + B1_Mus2 SINE Alu 37 138 -9 9 1351 294 29 0 0 chr12 100499588 100499623 -20757907 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 1351 209 333 14 0 chr12 100499734 100499803 -20757727 + (CCCA)n Simple_repeat Simple_repeat 2 71 0 9 1351 424 216 24 12 chr12 100499806 100499970 -20757560 + (TCCA)n Simple_repeat Simple_repeat 2 167 0 9 1351 586 167 43 26 chr12 100500285 100500402 -20757128 - PB1D9 SINE Alu 0 120 2 1 1351 240 328 187 23 chr12 100500418 100500680 -20756850 + L2a LINE L2 3028 3332 -94 2 1351 590 306 88 27 chr12 100502098 100502394 -20755136 + MER58B DNA MER1_type 14 327 -14 3 1351 232 337 52 21 chr12 100503145 100503242 -20754288 + ORSL-2b DNA Tip100 399 498 -10 4 1351 426 228 211 0 chr12 100503700 100503814 -20753716 + ID_B1 SINE B4 81 218 -6 5 1351 316 297 72 33 chr12 100505429 100505582 -20751948 - MER102c DNA MER1_type -132 199 41 6 1351 340 286 77 42 chr12 100505638 100505806 -20751724 + ID_B1 SINE B4 48 221 -3 7 1351 985 274 24 65 chr12 100506573 100506866 -20750664 - B4A SINE B4 -9 283 3 8 1351 1441 64 37 0 chr12 100509721 100509908 -20747622 - B2_Mm2 SINE B2 -1 194 1 9 1351 786 255 33 136 chr12 100510494 100510646 -20746884 + MTEa LTR MaLR 3 155 -224 1 1351 1397 136 22 26 chr12 100510646 100510873 -20746657 + URR1A DNA MER1_type 1 226 0 1 1351 786 255 33 136 chr12 100510873 100510992 -20746538 + MTEa LTR MaLR 156 246 -133 1 1351 613 221 18 42 chr12 100511691 100511856 -20745674 + MTEa LTR MaLR 208 368 -11 1 1351 312 137 0 0 chr12 100513556 100513607 -20743923 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 1 1351 1293 252 119 13 chr12 100515214 100515532 -20741998 - ORR1D2 LTR MaLR 0 370 19 1 1351 422 238 260 83 chr12 100515741 100515989 -20741541 + B4 SINE B4 1 292 0 1 1351 273 29 0 0 chr12 100516027 100516061 -20741469 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1351 3928 121 81 31 chr12 100516257 100516972 -20740558 + RMER17A LTR ERVK 1 751 0 1 1351 906 267 111 34 chr12 100517072 100517396 -20740134 - ORR1E LTR MaLR 0 379 1 1 1351 1391 40 17 6 chr12 100517472 100517648 -20739882 + B2_Mm2 SINE B2 2 179 -16 1 1351 826 306 77 20 chr12 100518252 100518593 -20738937 - MLT1B LTR MaLR -2 388 19 1 1351 229 301 42 57 chr12 100518627 100518752 -20738778 - L2c LINE L2 -9 3378 3225 2 1351 310 323 40 0 chr12 100520922 100521021 -20736509 + B1F1 SINE Alu 1 103 -46 2 1351 467 263 210 22 chr12 100522434 100522663 -20734867 + B4 SINE B4 4 275 -17 2 1351 215 167 15 0 chr12 100522708 100522774 -20734756 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1351 318 298 84 11 chr12 100523084 100523130 -20734400 + ID SINE ID 29 81 -143 2 1351 225 321 91 36 chr12 100523130 100523240 -20734290 + PB1D10 SINE Alu 1 116 -1 2 1351 1004 209 44 0 chr12 100524022 100524228 -20733302 + B3 SINE B2 1 215 -1 2 1351 366 171 0 0 chr12 100525951 100526021 -20731509 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1351 410 262 182 32 chr12 100526696 100526822 -20730708 + ID_B1 SINE B4 80 224 0 2 1351 254 378 10 10 chr12 100526866 100526965 -20730565 + Tigger5 DNA MER2_type 146 244 -2162 2 1351 669 114 15 8 chr12 100527158 100527291 -20730239 + (CA)n Simple_repeat Simple_repeat 2 135 0 3 1351 279 0 0 0 chr12 100530448 100530479 -20727051 + (CAGC)n Simple_repeat Simple_repeat 1 31 0 3 1351 198 0 0 0 chr12 100530479 100530501 -20727029 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1351 606 300 44 20 chr12 100530882 100531086 -20726444 + Tigger1 DNA MER2_type 2196 2404 -14 3 1352 435 301 89 32 chr12 100533524 100533840 -20723690 + L1MB2 LINE L1 5837 6170 -1 3 1352 198 0 0 0 chr12 100534109 100534131 -20723399 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1352 612 67 0 0 chr12 100534591 100534681 -20722849 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 1352 301 223 17 51 chr12 100534689 100534807 -20722723 + Lx8 LINE L1 7360 7473 0 3 1352 549 0 0 0 chr12 100535315 100535376 -20722154 + (TCC)n Simple_repeat Simple_repeat 1 61 0 3 1352 319 228 143 45 chr12 100536001 100536134 -20721396 + RMER5 LTR ERV1 353 498 -36 3 1352 275 281 90 40 chr12 100536087 100536187 -20721343 + MLT1A LTR MaLR 268 372 -2 4 1352 922 280 65 14 chr12 100536353 100536632 -20720898 - MLT1C LTR MaLR -153 314 22 4 1352 806 305 28 38 chr12 100538712 100539002 -20718528 + B4A SINE B4 3 289 -3 4 1352 953 241 109 50 chr12 100539119 100539596 -20717934 + L1MB2 LINE L1 5663 6167 -4 4 1352 695 151 8 0 chr12 100539698 100539824 -20717706 + (TGGA)n Simple_repeat Simple_repeat 3 129 0 4 1352 228 233 34 166 chr12 100539965 100540140 -20717390 + ORR1D2 LTR MaLR 205 356 -14 4 1352 379 287 36 14 chr12 100542390 100542528 -20715002 + B1F SINE Alu 1 141 -8 4 1352 812 219 91 17 chr12 100542765 100542997 -20714533 - L1MA5 LINE L1 0 6300 6052 4 1352 198 0 0 0 chr12 100543850 100543872 -20713658 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 4 1352 670 150 32 97 chr12 100543874 100544029 -20713501 + B1_Mur2 SINE Alu 5 149 0 4 1352 288 130 0 0 chr12 100544175 100544221 -20713309 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1352 411 21 0 0 chr12 100545518 100545566 -20711964 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1352 471 318 17 61 chr12 100545726 100545831 -20711699 - MER2 DNA MER2_type -159 186 83 5 1352 1489 59 0 16 chr12 100545831 100546020 -20711510 + B2_Mm2 SINE B2 2 187 -8 5 1352 471 318 17 61 chr12 100546020 100546095 -20711435 - MER2 DNA MER2_type -263 82 14 5 1352 261 0 0 0 chr12 100546234 100546263 -20711267 + (CGGG)n Simple_repeat Simple_repeat 1 29 0 5 1352 486 75 0 0 chr12 100546263 100546329 -20711201 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1352 284 344 15 30 chr12 100546455 100546587 -20710943 + MER58B DNA MER1_type 115 244 -97 5 1352 378 0 0 0 chr12 100547299 100547341 -20710189 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1352 513 305 128 18 chr12 100547351 100547578 -20709952 - B4A SINE B4 -40 252 1 5 1352 342 0 0 0 chr12 100548938 100548976 -20708554 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1352 335 250 199 41 chr12 100549903 100550049 -20707481 + LTR16A1 LTR ERVL 286 454 -2 6 1352 1287 151 54 14 chr12 100550309 100550531 -20706999 + ORR1C2 LTR MaLR 154 384 0 6 1352 389 306 101 27 chr12 100550601 100550789 -20706741 + L1MB2 LINE L1 5779 5980 -191 6 1352 268 282 13 0 chr12 100550803 100550881 -20706649 + L1MB2 LINE L1 6034 6112 -59 6 1352 343 336 24 56 chr12 100550889 100551015 -20706515 + ID_B1 SINE B4 85 206 -18 6 1352 312 315 32 89 chr12 100551015 100551044 -20706486 + B1F2 SINE Alu 4 149 0 6 1352 282 326 40 20 chr12 100551201 100551301 -20706229 + ORR1E LTR MaLR 7 108 -251 6 1352 1169 49 21 0 chr12 100551730 100551873 -20705657 + B1_Mus1 SINE Alu 2 147 -1 6 1352 238 318 0 0 chr12 100552019 100552082 -20705448 - ID4 SINE ID -16 67 5 6 1352 522 203 0 0 chr12 100552277 100552400 -20705130 + (CA)n Simple_repeat Simple_repeat 2 124 0 6 1352 232 386 83 16 chr12 100553571 100553763 -20703767 + MLT1H2 LTR MaLR 74 278 -211 6 1352 966 291 84 30 chr12 100555294 100555723 -20701807 - MER68 LTR ERVL -105 458 7 7 1352 474 263 86 12 chr12 100556317 100556444 -20701086 - B4A SINE B4 -92 132 2 7 1352 1124 38 8 0 chr12 100556758 100556889 -20700641 + B1_Mm SINE Alu 2 133 -14 7 1352 468 0 0 0 chr12 100556889 100556941 -20700589 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1352 350 259 147 9 chr12 100556965 100557074 -20700456 + ORR1E LTR MaLR 1 124 -235 7 1352 378 314 120 28 chr12 100558129 100558420 -20699110 - L2a LINE L2 0 3426 3109 7 1352 1236 89 6 23 chr12 100558770 100558943 -20698587 + B2_Mm1t SINE B2 2 171 -22 7 1352 369 0 0 0 chr12 100558950 100558991 -20698539 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1352 189 0 0 0 chr12 100559406 100559427 -20698103 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1352 306 0 0 0 chr12 100559427 100559460 -20698070 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1352 214 379 39 0 chr12 100561271 100561374 -20696156 - MIR3 SINE MIR -21 187 81 8 1352 1252 34 7 0 chr12 100561456 100561602 -20695928 + B1_Mus2 SINE Alu 1 147 0 8 1352 307 261 87 116 chr12 100561956 100562129 -20695401 + B4A SINE B4 57 224 -68 8 1352 745 104 9 0 chr12 100562026 100562132 -20695398 + B1_Mus2 SINE Alu 41 147 0 8 1352 293 0 0 26 chr12 100562132 100562170 -20695360 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 8 1352 207 0 0 0 chr12 100562172 100562195 -20695335 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 8 1352 1018 119 14 0 chr12 100562397 100562540 -20694990 + B1_Mur4 SINE Alu 2 146 -4 8 1352 281 330 0 36 chr12 100562551 100562661 -20694869 + GA-rich Low_complexity Low_complexity 5 110 0 8 1352 359 225 88 58 chr12 100564013 100564150 -20693380 - L1MB4 LINE L1 -9 6171 6031 8 1352 247 268 192 27 chr12 100564163 100564309 -20693221 - L1MB4 LINE L1 -273 5898 5729 8 1352 280 311 118 31 chr12 100564489 100564718 -20692812 - MER112 DNA MER1_type -11 250 2 8 1352 468 0 0 0 chr12 100565409 100565461 -20692069 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1352 24 53 0 0 chr12 100565545 100565583 -20691947 + AT_rich Low_complexity Low_complexity 1 38 0 9 1352 270 0 0 0 chr12 100565940 100565970 -20691560 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1352 523 245 20 37 chr12 100566553 100566699 -20690831 - MTE2b LTR MaLR -28 351 195 9 1352 228 294 78 0 chr12 100566733 100566784 -20690746 - RSINE1 SINE B4 -4 161 107 9 1352 291 28 0 0 chr12 100566793 100566829 -20690701 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1352 428 202 12 12 chr12 100567004 100567084 -20690446 - MTE2b LTR MaLR -207 172 93 9 1352 200 74 0 0 chr12 100567353 100567380 -20690150 + L2b LINE L2 3326 3352 -23 9 1352 21 0 0 0 chr12 100569537 100569558 -20687972 + AT_rich Low_complexity Low_complexity 1 21 0 9 1352 225 315 14 0 chr12 100569659 100569732 -20687798 + GA-rich Low_complexity Low_complexity 1 74 0 9 1352 21 0 0 0 chr12 100569842 100569863 -20687667 + GC_rich Low_complexity Low_complexity 1 21 0 9 1352 291 93 0 0 chr12 100571166 100571209 -20686321 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1352 818 254 43 82 chr12 100571227 100571531 -20685999 - B4A SINE B4 0 292 1 1 1352 351 284 62 28 chr12 100571562 100571707 -20685823 - RSINE1 SINE B4 -11 154 5 1 1352 351 44 0 0 chr12 100573157 100573202 -20684328 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1352 496 236 117 35 chr12 100574339 100574484 -20683046 + RSINE1 SINE B4 2 158 -7 1 1352 717 278 73 38 chr12 100574944 100575314 -20682216 - L1MC3 LINE L1 -67 7718 7336 1 1352 541 141 0 45 chr12 100575626 100575715 -20681815 - B3 SINE B2 -129 87 3 1 1352 2227 150 74 10 chr12 100575784 100576175 -20681355 + MTC LTR MaLR 5 420 -1 1 1352 765 297 222 16 chr12 100576445 100576832 -20680698 + MLT1C LTR MaLR 1 467 0 1 1352 194 241 73 18 chr12 100578051 100578106 -20679424 + MIR SINE MIR 38 95 -167 1 1352 1130 211 10 5 chr12 100578698 100578907 -20678623 + B3 SINE B2 1 210 -6 1 1352 270 222 0 138 chr12 100581477 100581571 -20675959 + RLTR25A LTR ERVK 492 572 -531 1 1352 727 104 0 34 chr12 100581490 100581609 -20675921 + B1_Mus1 SINE Alu 22 136 -12 1 1352 387 0 0 0 chr12 100581610 100581653 -20675877 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1352 534 133 0 0 chr12 100583283 100583373 -20674157 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 1 1352 363 44 0 0 chr12 100583597 100583642 -20673888 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1352 434 238 23 30 chr12 100583744 100583889 -20673641 - B4A SINE B4 -105 187 50 1 1352 229 213 0 21 chr12 100584775 100584823 -20672707 + GA-rich Low_complexity Low_complexity 3 49 0 1 1352 241 207 10 146 chr12 100584904 100585000 -20672530 + RMER12 LTR ERVK 693 775 -547 1 1352 238 326 53 108 chr12 100585016 100585057 -20672473 - MT2_Mm LTR ERVL -57 436 379 1 1352 450 209 18 54 chr12 100585057 100585168 -20672362 + ID_B1 SINE B4 50 156 -68 1 1352 238 326 53 108 chr12 100585168 100585268 -20672262 - MT2_Mm LTR ERVL -57 378 203 1 1352 351 304 70 63 chr12 100585268 100585426 -20672104 - MER58B DNA MER1_type -3 338 180 1 1352 572 310 44 3 chr12 100585902 100586095 -20671435 + MIRc SINE MIR 27 220 -48 1 1352 221 109 22 0 chr12 100586258 100586304 -20671226 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1352 404 319 102 40 chr12 100586314 100586588 -20670942 + B4A SINE B4 2 292 0 1 1352 222 231 0 19 chr12 100586595 100586648 -20670882 + (CATA)n Simple_repeat Simple_repeat 4 55 0 1 1352 1752 16 0 0 chr12 100588973 100589166 -20668364 + B2_Mm1a SINE B2 1 193 0 1 1352 463 267 94 88 chr12 100589333 100589493 -20668037 + RSINE1 SINE B4 4 164 -1 1 1352 217 245 18 36 chr12 100589589 100589644 -20667886 - PB1D9 SINE Alu -3 117 64 1 1352 376 340 86 13 chr12 100589686 100589838 -20667692 + RSINE1 SINE B4 3 165 0 1 1352 776 320 50 63 chr12 100591227 100591607 -20665923 - MTE2b LTR MaLR -4 375 1 1 1352 342 67 0 0 chr12 100592372 100592417 -20665113 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1352 1229 97 57 0 chr12 100592886 100593062 -20664468 + B2_Mm1t SINE B2 2 187 -6 1 1352 644 256 22 0 chr12 100593140 100593277 -20664253 + ID_B1 SINE B4 82 221 -3 1 1352 414 0 0 0 chr12 100593277 100593323 -20664207 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1352 279 240 238 10 chr12 100593440 100593541 -20663989 + B4A SINE B4 122 245 -47 1 1352 459 227 107 101 chr12 100593642 100593830 -20663700 + B4A SINE B4 58 246 -46 1 1352 425 296 190 29 chr12 100594040 100594214 -20663316 - ID_B1 SINE B4 -18 206 5 1 1352 328 283 33 0 chr12 100594707 100594827 -20662703 + LTR33 LTR ERVL 390 513 -2 1 1352 273 300 12 12 chr12 100595457 100595538 -20661992 - ID4_ SINE ID -1 82 2 1 1352 317 171 0 0 chr12 100595557 100595627 -20661903 - B1F SINE Alu -50 70 1 1 1352 294 347 10 10 chr12 100595627 100595659 -20661871 - B4A SINE B4 -207 85 54 1 1352 372 22 0 0 chr12 100596009 100596054 -20661476 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1352 383 276 142 8 chr12 100596143 100596285 -20661245 - ID_B1 SINE B4 -117 175 5 1 1352 499 168 26 0 chr12 100596451 100596564 -20660966 - RMER1B Other Other -11 1055 940 1 1352 1442 154 147 0 chr12 100596584 100596857 -20660673 - RMER1B Other Other -179 887 575 1 1352 240 319 85 85 chr12 100596903 100597033 -20660497 - B4A SINE B4 -159 133 4 1 1352 306 306 23 31 chr12 100597327 100597542 -20659988 + L1M5 LINE L1 5568 5787 -392 1 1352 250 209 14 40 chr12 100597688 100597777 -20659753 - RSINE1 SINE B4 -209 83 2 1 1352 378 0 0 0 chr12 100597869 100597911 -20659619 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1352 237 224 0 109 chr12 100597945 100597966 -20659564 + B4A SINE B4 71 85 -207 1 1352 246 220 40 0 chr12 100597966 100598016 -20659514 + B1F1 SINE Alu 1 52 -97 1 1352 499 243 44 0 chr12 100598153 100598289 -20659241 + L1MC4 LINE L1 6925 7066 -976 1 1352 684 268 40 53 chr12 100598971 100599222 -20658308 + B4 SINE B4 9 290 -2 1 1352 244 196 0 0 chr12 100600238 100600284 -20657246 + C-rich Low_complexity Low_complexity 1 46 0 1 1352 189 0 0 0 chr12 100600400 100600421 -20657109 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 1352 331 254 128 152 chr12 100603226 100603297 -20654233 + B4 SINE B4 3 68 -224 1 1352 1241 68 0 0 chr12 100603297 100603443 -20654087 + B1_Mus2 SINE Alu 2 147 0 1 1352 331 254 128 152 chr12 100603443 100603668 -20653862 + B4 SINE B4 69 292 0 1 1352 268 191 29 0 chr12 100603668 100603736 -20653794 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1352 333 286 75 125 chr12 100604447 100604687 -20652843 - MLT1A LTR MaLR -11 363 136 1 1352 1410 64 37 16 chr12 100604736 100604926 -20652604 - B2_Mm2 SINE B2 -1 194 1 1 1352 255 259 152 36 chr12 100604936 100605048 -20652482 - MLT1A LTR MaLR -249 125 1 1 1352 351 238 172 82 chr12 100606095 100606351 -20651179 - RMER10A LTR ERVL 0 442 164 1 1352 21 0 0 0 chr12 100607155 100607176 -20650354 + GC_rich Low_complexity Low_complexity 1 21 0 1 1352 204 333 0 0 chr12 100607204 100607258 -20650272 + polypurine Low_complexity Low_complexity 2 55 0 1 1352 180 247 137 88 chr12 100607479 100607581 -20649949 + MIR SINE MIR 40 146 -62 1 1352 253 296 21 54 chr12 100607701 100607794 -20649736 - MLT1B LTR MaLR 0 390 301 1 1352 221 190 282 12 chr12 100609119 100609204 -20648326 - MIR3 SINE MIR -95 113 6 1 1352 655 258 119 15 chr12 100610405 100610584 -20646946 + B4A SINE B4 71 271 -21 1 1352 261 0 0 0 chr12 100610584 100610613 -20646917 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1352 615 27 0 0 chr12 100610613 100610685 -20646845 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1352 655 258 119 15 chr12 100610685 100610705 -20646825 + B4A SINE B4 272 291 -1 1 1352 372 192 41 0 chr12 100611372 100611445 -20646085 + Lx6 LINE L1 6902 6977 -483 1 1352 1322 175 19 11 chr12 100611478 100611744 -20645786 + Lx7 LINE L1 7382 7649 -47 1 1352 198 0 0 0 chr12 100611744 100611766 -20645764 + (GGGGA)n Simple_repeat Simple_repeat 1 22 0 1 1352 225 256 184 11 chr12 100612117 100612204 -20645326 + MIRc SINE MIR 91 192 -76 1 1352 1119 226 85 72 chr12 100612871 100613234 -20644296 - MTE2a LTR MaLR -10 369 2 1 1352 274 272 75 155 chr12 100613776 100614015 -20643515 + MLT1K LTR MaLR 371 590 -5 1 1352 252 0 0 0 chr12 100614341 100614369 -20643161 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1352 204 330 39 10 chr12 100614645 100614749 -20642781 + L2a LINE L2 2335 2441 -978 1 1352 227 31 31 0 chr12 100614753 100614785 -20642745 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1352 687 212 0 0 chr12 100614796 100614914 -20642616 + PB1D9 SINE Alu 2 119 -1 1 1352 381 338 30 15 chr12 100614914 100614926 -20642604 + B4A SINE B4 87 218 -74 1 1352 204 245 55 36 chr12 100615094 100615149 -20642381 + L2a LINE L2 2992 3047 -379 1 1352 273 342 0 0 chr12 100616400 100616479 -20641051 + MLT1J2 LTR MaLR 52 130 -318 1 1352 243 240 52 96 chr12 100617267 100617382 -20640148 - ID_B1 SINE B4 0 224 115 1 1352 231 36 0 0 chr12 100618846 100618874 -20638656 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1352 1285 40 0 0 chr12 100618874 100619022 -20638508 - B1_Mus1 SINE Alu 0 148 1 1 1352 1994 138 30 57 chr12 100619136 100619542 -20637988 - Lx4A LINE L1 -40 7018 6624 1 1352 1292 79 269 0 chr12 100619543 100619770 -20637760 + Lx4A LINE L1 6303 6590 -468 1 1352 258 235 0 81 chr12 100619770 100619844 -20637686 - ID4 SINE ID -9 74 7 1 1352 201 74 0 0 chr12 100619991 100620018 -20637512 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1 1352 1084 190 34 0 chr12 100620208 100620413 -20637117 + B3 SINE B2 3 214 -2 1 1352 1061 52 81 0 chr12 100620675 100620811 -20636719 - B1_Mus2 SINE Alu 0 147 1 1 1352 942 237 123 16 chr12 100620870 100621189 -20636341 - MTD LTR MaLR 0 379 40 1 1352 254 219 172 0 chr12 100621232 100621296 -20636234 + B3A SINE B2 2 76 -122 1 1352 746 176 16 0 chr12 100621355 100621480 -20636050 + B1_Mus2 SINE Alu 8 134 -13 1 1352 225 0 0 0 chr12 100621480 100621505 -20636025 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1352 243 215 0 0 chr12 100621781 100621796 -20635734 + A-rich Low_complexity Low_complexity 1 15 0 1 1352 1437 84 5 10 chr12 100621796 100621989 -20635541 + B2_Mm2 SINE B2 3 194 -1 1 1352 1134 62 0 76 chr12 100621991 100622149 -20635381 + B1_Mus2 SINE Alu 2 147 0 1 1352 243 215 0 0 chr12 100622149 100622195 -20635335 + A-rich Low_complexity Low_complexity 16 61 0 1 1352 616 199 27 27 chr12 100623083 100623233 -20634297 + B1_Mur4 SINE Alu 1 150 0 1 1352 472 221 80 0 chr12 100623768 100623881 -20633649 + ID_B1 SINE B4 99 220 -4 1 1352 513 262 0 0 chr12 100625435 100625542 -20631988 + B3A SINE B2 8 114 -84 1 1352 315 0 0 0 chr12 100625580 100625615 -20631915 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1352 438 20 0 0 chr12 100625615 100625665 -20631865 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1352 953 34 0 0 chr12 100626266 100626277 -20631253 + B1_Mus1 SINE Alu 30 146 -2 2 1352 354 250 34 161 chr12 100626277 100626383 -20631147 + RLTR25B LTR ERVK 441 536 -492 2 1352 224 30 30 0 chr12 100626383 100626416 -20631114 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1352 354 250 34 161 chr12 100626416 100626514 -20631016 + RLTR25B LTR ERVK 537 619 -409 2 1352 1127 88 0 0 chr12 100627336 100627483 -20630047 + B1_Mus1 SINE Alu 2 148 0 2 1352 242 245 148 30 chr12 100627601 100627612 -20629918 + ID_B1 SINE B4 104 216 -8 2 1352 337 300 33 0 chr12 100627612 100627702 -20629828 + PB1D10 SINE Alu 17 109 -8 2 1352 232 265 0 0 chr12 100627829 100627878 -20629652 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 2 1352 333 118 0 0 chr12 100627884 100627935 -20629595 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1352 436 250 41 24 chr12 100627978 100628020 -20629510 + B4 SINE B4 43 86 -206 2 1352 688 47 0 0 chr12 100628020 100628105 -20629425 + B1_Mus1 SINE Alu 1 85 -63 2 1352 1194 42 0 14 chr12 100628923 100629069 -20628461 + B1_Mus1 SINE Alu 5 148 0 2 1352 258 156 0 0 chr12 100629069 100629114 -20628416 + A-rich Low_complexity Low_complexity 1 45 0 2 1352 26 0 0 0 chr12 100631068 100631094 -20626436 + GC_rich Low_complexity Low_complexity 1 26 0 2 1352 22 111 0 0 chr12 100631147 100631246 -20626284 + GC_rich Low_complexity Low_complexity 1 99 0 2 1352 354 98 0 0 chr12 100632283 100632334 -20625196 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 2 1352 507 60 0 15 chr12 100632906 100632974 -20624556 + B1_Mus2 SINE Alu 79 145 -2 2 1352 198 71 0 0 chr12 100633759 100633787 -20623743 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2 1352 900 157 0 0 chr12 100633836 100633970 -20623560 - B1_Mus1 SINE Alu -13 135 2 2 1352 754 224 6 38 chr12 100635337 100635495 -20622035 + B3A SINE B2 2 154 -44 2 1352 459 52 0 61 chr12 100635496 100635578 -20621952 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1352 270 164 0 0 chr12 100635654 100635709 -20621821 + T-rich Low_complexity Low_complexity 1 55 0 2 1352 502 276 124 7 chr12 100635785 100635938 -20621592 - MER5A DNA MER1_type -18 171 1 2 1352 904 236 45 0 chr12 100636645 100636844 -20620686 - B3 SINE B2 -7 209 2 2 1352 247 308 108 65 chr12 100637022 100637161 -20620369 + RSINE1 SINE B4 21 165 0 2 1352 22 35 0 0 chr12 100637258 100637287 -20620243 + AT_rich Low_complexity Low_complexity 1 29 0 2 1352 290 300 52 62 chr12 100637505 100637697 -20619833 - ORR1E LTR MaLR -169 190 1 2 1352 216 275 109 11 chr12 100637697 100637789 -20619741 + MIR SINE MIR 157 257 -5 2 1352 435 236 0 54 chr12 100637919 100638031 -20619499 + ID_B1 SINE B4 81 186 -38 2 1352 461 284 9 0 chr12 100638095 100638204 -20619326 - PB1D10 SINE Alu -7 110 1 2 1352 1173 68 0 7 chr12 100638935 100639083 -20618447 + B1_Mus2 SINE Alu 1 147 0 2 1352 3881 173 81 20 chr12 100639247 100639985 -20617545 + RMER19B LTR ERVK 1 783 -119 2 1352 2111 112 85 54 chr12 100639988 100640109 -20617421 - RLTR23 LTR ERV1 -4 426 308 2 1352 2766 66 145 139 chr12 100640109 100640618 -20616912 - RLTR1B LTR ERV1 0 512 1 2 1352 2111 112 85 54 chr12 100640618 100640884 -20616646 - RLTR23 LTR ERV1 -123 307 27 2 1352 692 76 0 11 chr12 100640878 100640971 -20616559 + RMER19B LTR ERVK 799 890 -12 2 1352 1079 312 155 18 chr12 100641232 100641747 -20615783 + MER82 DNA MER2_type 67 652 -1 2 1352 348 291 141 29 chr12 100641812 100641982 -20615548 + ORR1E LTR MaLR 9 197 -162 2 1352 1400 71 11 0 chr12 100642075 100642258 -20615272 - B2_Mm1t SINE B2 -7 186 2 2 1352 436 271 57 25 chr12 100642332 100642491 -20615039 - MIR SINE MIR -68 194 31 2 1352 276 155 0 0 chr12 100642698 100642769 -20614761 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 2 1352 659 117 11 34 chr12 100642784 100642961 -20614569 + (TCTCTG)n Simple_repeat Simple_repeat 4 176 0 2 1352 210 105 0 0 chr12 100642952 100642990 -20614540 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1352 256 42 40 40 chr12 100642993 100643043 -20614487 + (TCTCTG)n Simple_repeat Simple_repeat 2 51 0 2 1352 180 0 0 0 chr12 100643043 100643063 -20614467 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1352 561 280 82 12 chr12 100643077 100643247 -20614283 + B3A SINE B2 2 183 -15 2 1352 784 189 0 13 chr12 100643261 100643411 -20614119 + B1_Mur4 SINE Alu 1 148 -2 2 1352 21 57 0 0 chr12 100643456 100643491 -20614039 + AT_rich Low_complexity Low_complexity 1 35 0 2 1352 2388 166 29 10 chr12 100643678 100644091 -20613439 + MTC LTR MaLR 1 421 0 2 1352 290 217 0 16 chr12 100644129 100644190 -20613340 + B4 SINE B4 229 288 -4 2 1352 1476 34 0 0 chr12 100644198 100644376 -20613154 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 2 1352 207 0 0 0 chr12 100644417 100644440 -20613090 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1352 562 214 150 8 chr12 100646208 100646335 -20611195 - B1_Mur2 SINE Alu -4 145 1 2 1352 469 282 37 43 chr12 100646474 100646637 -20610893 - RSINE1 SINE B4 -1 164 3 2 1352 263 331 40 24 chr12 100647055 100647179 -20610351 - MIRb SINE MIR -37 231 106 2 1352 1133 165 43 5 chr12 100647213 100647400 -20610130 + B3 SINE B2 2 196 -20 2 1352 2407 95 3 35 chr12 100647400 100647738 -20609792 + ORR1A2 LTR MaLR 1 327 0 2 1352 1133 165 43 5 chr12 100647738 100647757 -20609773 + B3 SINE B2 197 215 -1 2 1352 233 243 17 127 chr12 100647766 100647884 -20609646 + MLT1A0 LTR MaLR 39 143 -222 2 1352 262 257 135 0 chr12 100647909 100647983 -20609547 + PB1D7 SINE Alu 27 110 -10 2 1352 470 91 0 13 chr12 100649275 100649353 -20608177 + (GGAGA)n Simple_repeat Simple_repeat 1 77 0 2 1352 651 326 89 29 chr12 100649370 100649787 -20607743 + Arthur1 DNA Tip100 3447 3888 -59 2 1352 246 289 103 121 chr12 100649847 100649867 -20607663 - MT2B2 LTR ERVL -312 272 240 2 1352 407 241 17 0 chr12 100649867 100649962 -20607568 - B1_Mus2 SINE Alu -19 101 1 2 1352 246 289 103 121 chr12 100649962 100650071 -20607459 - MT2B2 LTR ERVL -312 239 53 2 1352 212 310 0 123 chr12 100651504 100651563 -20605967 - BC1_Mm scRNA scRNA -52 100 46 2 1352 1219 111 67 0 chr12 100651563 100651743 -20605787 - B2_Mm1t SINE B2 0 193 2 2 1352 212 310 0 123 chr12 100651743 100651797 -20605733 - BC1_Mm scRNA scRNA -107 45 1 2 1352 225 288 151 0 chr12 100651800 100651873 -20605657 - PB1 SINE Alu -5 122 39 2 1352 820 262 60 20 chr12 100651948 100652147 -20605383 + ID_B1 SINE B4 6 212 -12 2 1352 398 250 59 52 chr12 100652029 100652164 -20605366 + B1F2 SINE Alu 14 149 0 2 1352 320 333 101 0 chr12 100652236 100652374 -20605156 + MIR SINE MIR 90 241 -21 2 1352 233 269 103 15 chr12 100652423 100652491 -20605039 + RSINE1 SINE B4 18 91 -74 2 1352 384 160 52 67 chr12 100652561 100652695 -20604835 + RMER17B LTR ERVK 328 459 -499 2 1352 559 273 0 16 chr12 100652845 100652968 -20604562 + RSINE1 SINE B4 4 124 -41 2 1352 1226 41 14 0 chr12 100653513 100653659 -20603871 + B1_Mus1 SINE Alu 1 148 0 2 1352 601 275 94 0 chr12 100654774 100654923 -20602607 - RSINE1 SINE B4 0 165 3 2 1352 552 30 0 0 chr12 100654988 100655054 -20602476 + (GGA)n Simple_repeat Simple_repeat 3 68 0 2 1352 887 270 123 67 chr12 100655558 100655915 -20601615 + MTE2a LTR MaLR 1 377 -2 2 1352 180 0 0 0 chr12 100656618 100656638 -20600892 + (CACAC)n Simple_repeat Simple_repeat 2 21 0 2 1352 591 148 6 45 chr12 100657004 100657127 -20600403 - B1_Mm SINE Alu -20 128 5 2 1352 300 243 127 93 chr12 100658103 100658221 -20599309 - RSINE1 SINE B4 -29 136 15 2 1352 324 0 0 0 chr12 100658721 100658757 -20598773 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1352 771 160 8 22 chr12 100659528 100659662 -20597868 + B1_Mur3 SINE Alu 2 133 -16 2 1352 422 312 27 14 chr12 100659675 100659821 -20597709 + RSINE1 SINE B4 2 149 -16 2 1352 233 301 81 20 chr12 100659821 100659970 -20597560 - RLTR22_Mur LTR ERVK -384 1464 1307 2 1352 438 242 0 0 chr12 100659974 100660098 -20597432 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1352 216 0 0 0 chr12 100660658 100660682 -20596848 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 2 1352 413 274 85 39 chr12 100660690 100660819 -20596711 - RSINE1 SINE B4 -29 136 2 2 1352 329 248 47 27 chr12 100661491 100661601 -20595929 + B1F SINE Alu 14 149 0 2 1352 910 279 65 22 chr12 100661624 100661899 -20595631 + B4 SINE B4 2 288 -4 2 1352 781 204 0 33 chr12 100661999 100662151 -20595379 + B1_Mur1 SINE Alu 1 147 -2 2 1352 361 281 39 47 chr12 100662482 100662609 -20594921 + MLT1A LTR MaLR 27 152 -222 2 1352 539 291 43 0 chr12 100662925 100663066 -20594464 + B1F1 SINE Alu 1 147 -2 2 1353 713 243 114 21 chr12 100663488 100663681 -20593849 - B3 SINE B2 -5 211 1 2 1353 787 226 40 108 chr12 100665044 100665267 -20592263 + B3 SINE B2 9 216 0 2 1353 232 268 36 0 chr12 100665470 100665526 -20592004 - RLTR25B LTR ERVK -946 82 25 2 1353 606 51 0 0 chr12 100665578 100665656 -20591874 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 1353 234 0 0 0 chr12 100665656 100665681 -20591849 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1353 483 303 49 70 chr12 100665703 100665845 -20591685 - ID_B1 SINE B4 -13 211 73 2 1353 603 190 41 16 chr12 100665829 100665952 -20591578 - B1F2 SINE Alu -3 146 21 2 1353 284 264 77 39 chr12 100665989 100666087 -20591443 + B4A SINE B4 111 215 -77 2 1353 402 21 0 0 chr12 100666087 100666134 -20591396 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 2 1353 284 264 77 39 chr12 100666134 100666165 -20591365 + B4A SINE B4 216 245 -47 2 1353 908 160 4 17 chr12 100666166 100666402 -20591128 + GA-rich Low_complexity Low_complexity 1 232 0 2 1353 421 239 50 58 chr12 100666442 100666562 -20590968 + PB1D9 SINE Alu 1 119 -1 2 1353 424 130 0 55 chr12 100666858 100666931 -20590599 - URR1B DNA MER1_type 0 225 157 2 1353 3361 48 0 2 chr12 100666962 100667359 -20590171 - MTA_Mm LTR MaLR 0 396 1 3 1353 933 159 147 10 chr12 100667779 100667976 -20589554 + URR1A DNA MER1_type 1 224 -2 3 1353 182 218 167 0 chr12 100667992 100668070 -20589460 + L2a LINE L2 3332 3422 -4 3 1353 21 82 0 0 chr12 100668281 100668330 -20589200 + AT_rich Low_complexity Low_complexity 1 49 0 3 1353 248 240 0 0 chr12 100668505 100668552 -20588978 - ID_B1 SINE B4 -6 218 172 3 1353 722 195 199 5 chr12 100668552 100668748 -20588782 - ORR1D2 LTR MaLR -2 368 135 3 1353 813 291 11 6 chr12 100668749 100668929 -20588601 - ID_B1 SINE B4 -43 181 1 3 1353 669 293 11 11 chr12 100668983 100669173 -20588357 + B3A SINE B2 3 192 -6 3 1353 314 270 6 0 chr12 100669173 100669351 -20588179 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1353 293 291 12 12 chr12 100669376 100669456 -20588074 + ORR1D2 LTR MaLR 127 206 -164 3 1353 1531 37 37 5 chr12 100669457 100669645 -20587885 + B2_Mm2 SINE B2 2 195 0 3 1353 219 69 0 0 chr12 100669706 100669735 -20587795 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 1353 1076 267 61 53 chr12 100669816 100670192 -20587338 - MTE2a LTR MaLR 0 379 1 3 1353 204 320 0 0 chr12 100670265 100670315 -20587215 + MIR SINE MIR 99 148 -114 3 1353 322 258 59 59 chr12 100670345 100670481 -20587049 + ORR1E LTR MaLR 14 149 -210 3 1353 24 0 0 0 chr12 100670618 100670642 -20586888 + AT_rich Low_complexity Low_complexity 1 24 0 3 1353 26 0 0 0 chr12 100670780 100670806 -20586724 + AT_rich Low_complexity Low_complexity 1 26 0 3 1353 1230 54 0 0 chr12 100670806 100670953 -20586577 - B1_Mus1 SINE Alu 0 148 2 3 1353 23 33 0 0 chr12 100671399 100671429 -20586101 + AT_rich Low_complexity Low_complexity 1 30 0 3 1353 207 0 0 0 chr12 100672195 100672218 -20585312 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1353 1153 42 14 0 chr12 100672218 100672360 -20585170 - B1_Mus2 SINE Alu -2 145 2 3 1353 325 316 14 76 chr12 100672486 100672630 -20584900 + B4 SINE B4 4 138 -154 3 1353 234 0 0 0 chr12 100672630 100672656 -20584874 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1353 394 106 35 23 chr12 100672656 100672743 -20584787 + L1Md_F2 LINE L1 6495 6582 0 3 1353 1475 74 5 0 chr12 100672871 100673060 -20584470 + B2_Mm1a SINE B2 1 190 -3 3 1353 252 0 0 0 chr12 100673072 100673100 -20584430 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1353 342 67 0 0 chr12 100673174 100673219 -20584311 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1353 299 150 17 0 chr12 100674089 100674149 -20583381 + CT-rich Low_complexity Low_complexity 3 63 0 3 1353 990 111 7 0 chr12 100674198 100674333 -20583197 - B1_Mus2 SINE Alu -11 136 1 3 1353 26 0 0 0 chr12 100674694 100674720 -20582810 + AT_rich Low_complexity Low_complexity 1 26 0 3 1353 411 21 0 0 chr12 100674754 100674802 -20582728 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 3 1353 1168 62 0 40 chr12 100674802 100674953 -20582577 - B1_Mus2 SINE Alu -2 145 1 3 1353 804 161 119 11 chr12 100674979 100675155 -20582375 - B2_Mm2 SINE B2 0 195 1 3 1353 1381 232 56 66 chr12 100675202 100675613 -20581917 - MTD LTR MaLR -8 411 5 3 1353 245 381 8 74 chr12 100675616 100675738 -20581792 + MLT1I LTR MaLR 253 366 -45 3 1353 247 143 31 16 chr12 100676108 100676172 -20581358 + CT-rich Low_complexity Low_complexity 4 68 0 3 1353 278 202 62 12 chr12 100676191 100676271 -20581259 - PB1D7 SINE Alu -33 87 4 3 1353 1256 41 0 0 chr12 100676401 100676547 -20580983 + B1_Mm SINE Alu 2 147 0 3 1353 216 97 0 0 chr12 100676547 100676578 -20580952 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1353 244 307 27 0 chr12 100677773 100677848 -20579682 + ID4 SINE ID 4 80 -3 3 1353 313 259 227 0 chr12 100677791 100677955 -20579575 + ID_B1 SINE B4 24 224 0 3 1353 369 0 0 0 chr12 100678297 100678338 -20579192 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1353 28 29 0 0 chr12 100678614 100678649 -20578881 + AT_rich Low_complexity Low_complexity 1 35 0 3 1353 537 160 8 94 chr12 100678649 100678766 -20578764 - B3 SINE B2 -105 111 5 3 1353 951 274 5 0 chr12 100678916 100679128 -20578402 - ID_B1 SINE B4 -11 213 1 3 1353 378 258 208 0 chr12 100679474 100679594 -20577936 + MER113 DNA MER1_type 123 267 -254 3 1353 1182 240 152 59 chr12 100679954 100680361 -20577169 + RCHARR1 DNA MER1_type 137 581 -393 3 1353 936 221 29 21 chr12 100680393 100680633 -20576897 + RCHARR1 DNA MER1_type 725 966 -8 3 1353 2670 56 0 0 chr12 100680717 100681040 -20576490 + L1_Mus3 LINE L1 6141 6463 -175 3 1353 516 261 104 0 chr12 100681158 100681292 -20576238 + B1_Mur3 SINE Alu 2 149 0 3 1353 806 155 0 63 chr12 100681388 100681546 -20575984 + B1_Mur3 SINE Alu 2 149 0 3 1353 24 0 0 0 chr12 100682167 100682191 -20575339 + AT_rich Low_complexity Low_complexity 1 24 0 3 1353 1141 275 39 52 chr12 100682395 100682779 -20574751 - MTEa LTR MaLR 0 379 1 3 1353 243 0 0 0 chr12 100683767 100683794 -20573736 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1353 303 337 23 0 chr12 100684649 100684735 -20572795 - ID SINE ID -136 88 1 3 1353 599 253 66 22 chr12 100684777 100684959 -20572571 - B3 SINE B2 0 216 27 3 1353 812 142 31 8 chr12 100684974 100685102 -20572428 - B1_Mur2 SINE Alu -1 148 18 3 1353 312 91 0 0 chr12 100685199 100685243 -20572287 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1353 541 210 12 123 chr12 100685251 100685414 -20572116 - RSINE1 SINE B4 -19 146 2 3 1353 811 186 22 43 chr12 100685435 100685620 -20571910 - B2_Mm2 SINE B2 -14 181 1 3 1353 260 218 55 0 chr12 100686206 100686261 -20571269 - MER58D DNA MER1_type 0 386 329 3 1353 435 279 65 22 chr12 100686380 100686519 -20571011 - ID_B1 SINE B4 -15 209 65 3 1353 1172 176 0 114 chr12 100686526 100686789 -20570741 + RMER10A LTR ERVL 1 233 -209 3 1353 1221 48 0 13 chr12 100686792 100686941 -20570589 - B1_Mus2 SINE Alu 0 147 1 3 1353 228 35 0 0 chr12 100686943 100686972 -20570558 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1353 998 50 196 12 chr12 100687925 100688088 -20569442 + B2_Mm2 SINE B2 3 195 0 3 1353 1872 109 17 17 chr12 100688640 100688930 -20568600 - L1Md_F2 LINE L1 0 6582 6293 3 1353 1499 57 10 15 chr12 100689219 100689415 -20568115 + B2_Mm2 SINE B2 1 195 0 3 1353 344 312 64 19 chr12 100689494 100689651 -20567879 + MER5A DNA MER1_type 1 164 -25 3 1353 318 325 63 143 chr12 100690039 100690262 -20567268 + B4 SINE B4 25 229 -63 3 1353 363 44 0 0 chr12 100690299 100690344 -20567186 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1353 780 274 19 10 chr12 100690399 100690605 -20566925 + ID_B1 SINE B4 4 211 -13 3 1353 198 0 0 0 chr12 100690605 100690627 -20566903 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 1353 484 311 79 65 chr12 100691485 100691755 -20565775 + B4 SINE B4 24 291 -1 3 1353 646 35 0 0 chr12 100692379 100692518 -20565012 + L1Md_T LINE L1 6498 6582 0 3 1353 420 20 0 0 chr12 100692534 100692583 -20564947 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1353 297 320 77 10 chr12 100693185 100693289 -20564241 + ID_B1 SINE B4 70 180 -44 3 1353 301 250 24 36 chr12 100693225 100693308 -20564222 + PB1D10 SINE Alu 36 117 0 3 1353 971 80 22 14 chr12 100693679 100693818 -20563712 + B1_Mur4 SINE Alu 2 141 -9 3 1353 835 278 55 96 chr12 100693870 100694236 -20563294 + ORR1E LTR MaLR 3 353 -6 3 1353 264 327 0 67 chr12 100694247 100694352 -20563178 - ID_B1 SINE B4 -46 178 81 3 1353 300 87 0 61 chr12 100694423 100694472 -20563058 + HAL1-3A_ME LINE L1 1975 2020 -838 3 1353 27 0 0 0 chr12 100696369 100696396 -20561134 + AT_rich Low_complexity Low_complexity 1 27 0 3 1353 269 234 31 0 chr12 100696706 100696770 -20560760 - ID4_ SINE ID -16 67 2 3 1353 380 313 50 64 chr12 100697619 100697899 -20559631 + B4A SINE B4 1 276 -16 3 1353 974 172 101 0 chr12 100698418 100698587 -20558943 - URR1A DNA MER1_type -40 186 1 3 1353 343 303 8 16 chr12 100698603 100698622 -20558908 - Lx7 LINE L1 -1894 5802 5785 3 1353 1230 34 0 27 chr12 100698622 100698772 -20558758 - B1_Mus2 SINE Alu -1 146 1 3 1353 1141 252 93 78 chr12 100698772 100699246 -20558284 - L1M3 LINE L1 -354 5817 5337 3 1353 1194 48 0 20 chr12 100699246 100699396 -20558134 + B1_Mm SINE Alu 1 147 0 3 1353 519 294 96 89 chr12 100699396 100699439 -20558091 - L1M5 LINE L1 -842 5337 5296 3 1353 515 276 66 0 chr12 100699439 100699591 -20557939 - RSINE1 SINE B4 0 165 4 3 1353 519 294 96 89 chr12 100699591 100699624 -20557906 - L1M5 LINE L1 -884 5295 5262 3 1353 414 284 61 41 chr12 100700203 100700350 -20557180 - Tigger15a DNA TcMar -366 349 200 3 1353 342 91 0 0 chr12 100700372 100700427 -20557103 + (CAGAGA)n Simple_repeat Simple_repeat 3 57 0 3 1353 405 0 0 0 chr12 100701078 100701123 -20556407 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1353 258 32 0 0 chr12 100701313 100701344 -20556186 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1353 612 49 0 24 chr12 100701344 100701428 -20556102 - B1_Mur4 SINE Alu 0 150 69 3 1353 711 157 7 59 chr12 100701453 100701588 -20555942 - B1_Mus1 SINE Alu 0 148 21 3 1353 192 77 0 0 chr12 100701599 100701625 -20555905 + (TCC)n Simple_repeat Simple_repeat 3 28 0 3 1353 1128 63 0 0 chr12 100701638 100701796 -20555734 + (TTC)n Simple_repeat Simple_repeat 3 160 0 3 1353 1753 125 16 26 chr12 100701796 100702100 -20555430 - Lx LINE L1 -12 6642 6342 3 1353 200 35 35 0 chr12 100702100 100702129 -20555401 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 3 1353 382 264 241 19 chr12 100702147 100702305 -20555225 - B4A SINE B4 -61 231 39 4 1353 881 265 19 0 chr12 100702821 100703036 -20554494 + ID_B1 SINE B4 3 221 -3 4 1353 192 125 0 0 chr12 100703150 100703182 -20554348 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1353 838 196 7 0 chr12 100703184 100703332 -20554198 - B1_Mur4 SINE Alu 0 150 2 4 1353 857 254 5 24 chr12 100703366 100703576 -20553954 + B3 SINE B2 5 210 -6 4 1353 3263 58 7 14 chr12 100703581 100704018 -20553512 + L1Md_F2 LINE L1 6148 6581 -1 4 1353 1236 223 78 128 chr12 100704618 100705015 -20552515 + MTEb LTR MaLR 3 379 0 4 1353 964 121 0 21 chr12 100705089 100705233 -20552297 + B1_Mur4 SINE Alu 1 141 -9 4 1353 510 17 0 0 chr12 100705242 100705301 -20552229 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 4 1353 201 176 0 0 chr12 100705455 100705489 -20552041 + A-rich Low_complexity Low_complexity 1 34 0 4 1353 21 0 0 0 chr12 100705989 100706010 -20551520 + AT_rich Low_complexity Low_complexity 1 21 0 4 1353 207 259 0 0 chr12 100707940 100707994 -20549536 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1353 265 316 50 22 chr12 100708853 100708992 -20548538 - MER5A1 DNA MER1_type 0 166 24 4 1353 486 263 72 7 chr12 100710445 100710583 -20546947 + ID_B1 SINE B4 77 223 -1 4 1353 465 34 0 0 chr12 100711175 100711234 -20546296 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1353 300 274 20 75 chr12 100711235 100711381 -20546149 + HAL1-3A_ME LINE L1 1986 2123 -735 4 1353 1297 128 11 0 chr12 100711387 100711575 -20545955 + B2_Mm1t SINE B2 3 192 -1 4 1353 21 0 0 0 chr12 100712300 100712321 -20545209 + GC_rich Low_complexity Low_complexity 1 21 0 4 1353 516 262 163 94 chr12 100714324 100714367 -20543163 + LTR55 LTR ERV 61 97 -451 4 1353 1202 102 57 0 chr12 100714367 100714544 -20542986 + B2_Mm2 SINE B2 2 188 -7 4 1353 516 262 163 94 chr12 100714544 100714612 -20542918 + LTR55 LTR ERV 98 147 -401 4 1353 733 194 234 0 chr12 100714612 100714787 -20542743 - B3 SINE B2 0 216 1 4 1353 516 262 163 94 chr12 100714787 100715129 -20542401 + LTR55 LTR ERV 148 545 -3 4 1353 345 264 106 26 chr12 100715380 100715493 -20542037 + L1M2 LINE L1 3088 3209 -2934 4 1353 470 282 40 0 chr12 100715546 100715670 -20541860 + ID_B1 SINE B4 91 219 -5 4 1353 1132 279 102 70 chr12 100715670 100715872 -20541658 + L1MA4 LINE L1 3168 3387 -2493 4 1353 1110 86 0 0 chr12 100715872 100716012 -20541518 + B1_Mus1 SINE Alu 1 140 -8 4 1353 303 28 0 0 chr12 100716013 100716049 -20541481 + (CAAAC)n Simple_repeat Simple_repeat 4 39 0 4 1353 414 0 0 0 chr12 100716052 100716098 -20541432 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 4 1353 210 105 0 0 chr12 100716105 100716143 -20541387 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1353 1989 273 133 42 chr12 100716143 100716396 -20541134 + L1MA4 LINE L1 3396 3691 -2452 4 1353 183 100 0 0 chr12 100716396 100716426 -20541104 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1353 1989 271 146 31 chr12 100716426 100717001 -20540529 + L1MA4 LINE L1 3692 4337 -1806 4 1353 1229 41 0 0 chr12 100717001 100717147 -20540383 + B1_Mm SINE Alu 2 147 0 4 1353 1989 271 146 31 chr12 100717147 100717533 -20539997 + L1MA4 LINE L1 4338 4789 -1354 4 1353 532 258 0 68 chr12 100717536 100717669 -20539861 + B3 SINE B2 91 214 -2 4 1353 579 326 68 56 chr12 100717675 100718189 -20539341 + L1MA4 LINE L1 5276 5795 -502 4 1353 591 195 344 6 chr12 100718236 100718321 -20539209 - B3 SINE B2 -1 215 82 4 1353 501 17 0 0 chr12 100718321 100718379 -20539151 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1353 591 195 344 6 chr12 100718379 100718453 -20539077 - B3 SINE B2 -135 81 2 4 1353 349 261 31 98 chr12 100718453 100718698 -20538832 + L1MA4 LINE L1 5791 6019 -281 4 1353 856 183 96 5 chr12 100718799 100718986 -20538544 + B3 SINE B2 2 205 -11 4 1353 363 251 219 4 chr12 100719328 100719584 -20537946 + L1ME1 LINE L1 2459 2769 -3377 4 1353 1131 249 169 6 chr12 100719870 100720226 -20537304 + MTD LTR MaLR 6 419 0 4 1353 4118 131 70 49 chr12 100720680 100721453 -20536077 - Lx4B LINE L1 -6 7052 6264 4 1353 1049 258 91 78 chr12 100721495 100721869 -20535661 + MTE2a LTR MaLR 1 379 0 4 1353 315 71 0 0 chr12 100723306 100723348 -20534182 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1353 241 264 28 19 chr12 100723468 100723576 -20533954 + L1ME1 LINE L1 2761 2869 -3277 4 1353 408 254 126 8 chr12 100723577 100723696 -20533834 - Tigger7 DNA MER2_type -1 2490 2358 4 1353 412 204 105 21 chr12 100723738 100723833 -20533697 + B4A SINE B4 184 286 -6 4 1353 237 132 0 0 chr12 100723845 100723883 -20533647 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1353 1439 281 15 38 chr12 100723885 100724439 -20533091 + L1ME1 LINE L1 5484 6026 -138 4 1353 256 306 40 104 chr12 100724458 100724659 -20532871 - MER57C2 LTR ERV1 0 434 247 4 1353 213 278 0 0 chr12 100724998 100725052 -20532478 + B4 SINE B4 13 66 -226 4 1353 306 0 0 0 chr12 100725301 100725335 -20532195 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1353 798 89 0 0 chr12 100725408 100725520 -20532010 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 4 1353 487 281 39 7 chr12 100725547 100725701 -20531829 - RSINE1 SINE B4 -2 163 5 4 1353 243 0 0 0 chr12 100726054 100726081 -20531449 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1353 260 230 130 54 chr12 100726426 100726518 -20531012 - MER5A1 DNA MER1_type -42 124 26 4 1353 266 317 0 0 chr12 100726540 100726622 -20530908 + MER5A DNA MER1_type 1 82 -107 4 1353 1042 248 108 58 chr12 100726624 100726967 -20530563 + MTEa LTR MaLR 20 379 0 4 1353 199 321 25 84 chr12 100726967 100727086 -20530444 + MER5A DNA MER1_type 78 189 0 4 1353 525 104 0 0 chr12 100727094 100727171 -20530359 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 4 1353 22 0 0 0 chr12 100727315 100727337 -20530193 + AT_rich Low_complexity Low_complexity 1 22 0 4 1353 862 159 7 0 chr12 100727676 100727814 -20529716 + B1_Mur1 SINE Alu 5 143 -6 4 1353 185 0 40 0 chr12 100728002 100728027 -20529503 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1353 204 274 39 0 chr12 100728062 100728113 -20529417 + MER5A DNA MER1_type 136 188 -1 4 1353 643 266 161 10 chr12 100729523 100729728 -20527802 + B4A SINE B4 1 236 -56 4 1353 405 0 0 0 chr12 100729728 100729773 -20527757 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1353 717 34 0 0 chr12 100729773 100729860 -20527670 + (GA)n Simple_repeat Simple_repeat 2 89 0 4 1353 300 53 0 0 chr12 100729909 100729947 -20527583 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1353 507 273 0 0 chr12 100729949 100730059 -20527471 - PB1 SINE Alu -17 110 1 4 1353 821 156 0 8 chr12 100730555 100730813 -20526717 + (TGGA)n Simple_repeat Simple_repeat 1 255 0 4 1353 942 148 0 0 chr12 100730828 100731004 -20526526 + (TGGA)n Simple_repeat Simple_repeat 4 179 0 4 1353 256 289 85 104 chr12 100731683 100731895 -20525635 + MT2B LTR ERVL 52 259 -342 4 1353 305 320 75 85 chr12 100731741 100731791 -20525739 + B4 SINE B4 33 80 -212 4 1353 733 181 27 20 chr12 100731791 100731938 -20525592 + B1F SINE Alu 2 149 0 4 1353 180 200 0 0 chr12 100731957 100731997 -20525533 + A-rich Low_complexity Low_complexity 1 40 0 4 1353 279 0 0 0 chr12 100732072 100732103 -20525427 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1353 234 208 0 86 chr12 100732213 100732271 -20525259 - ID4 SINE ID -22 61 9 4 1353 2367 129 55 11 chr12 100732330 100732727 -20524803 - ORR1B1 LTR MaLR -8 386 3 4 1353 1316 96 26 16 chr12 100732745 100732936 -20524594 + B2_Mm2 SINE B2 1 193 -2 4 1353 1216 36 0 0 chr12 100733000 100733138 -20524392 + B1_Mm SINE Alu 1 138 -9 4 1353 228 67 0 0 chr12 100733139 100733169 -20524361 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 4 1353 180 292 0 40 chr12 100733313 100733363 -20524167 + MIRc SINE MIR 120 167 -101 4 1353 948 141 0 0 chr12 100733766 100733929 -20523601 + (TG)n Simple_repeat Simple_repeat 1 163 0 4 1353 213 39 0 0 chr12 100734582 100734608 -20522922 + (CCA)n Simple_repeat Simple_repeat 1 26 0 4 1353 22 0 0 0 chr12 100735011 100735033 -20522497 + AT_rich Low_complexity Low_complexity 1 22 0 4 1353 1168 119 22 22 chr12 100735033 100735214 -20522316 - B2_Mm2 SINE B2 -14 181 1 4 1353 21 0 0 0 chr12 100735963 100735984 -20521546 + AT_rich Low_complexity Low_complexity 1 21 0 4 1353 296 255 158 30 chr12 100735998 100736099 -20521431 + RLTR14 LTR ERV1 269 382 0 4 1353 321 26 0 0 chr12 100736182 100736220 -20521310 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1353 770 196 0 51 chr12 100737637 100737793 -20519737 + B1F2 SINE Alu 1 148 -1 4 1353 1203 214 0 5 chr12 100737797 100738008 -20519522 + B3 SINE B2 1 210 -6 4 1353 1406 95 16 0 chr12 100738097 100738286 -20519244 + B2_Mm2 SINE B2 3 194 -1 4 1353 384 167 91 0 chr12 100738365 100738431 -20519099 - ID4 SINE ID -9 74 3 4 1353 556 316 7 0 chr12 100739874 100740010 -20517520 - ID_B1 SINE B4 -2 222 86 4 1353 610 145 20 103 chr12 100740365 100740511 -20517019 + URR1A DNA MER1_type 77 210 -16 4 1353 399 256 12 0 chr12 100741293 100741375 -20516155 - PB1D10 SINE Alu -34 83 1 4 1353 278 337 54 0 chr12 100741297 100741389 -20516141 - B4A SINE B4 -125 167 71 4 1353 836 222 0 0 chr12 100741398 100741542 -20515988 + RSINE1 SINE B4 5 148 -17 4 1353 1330 248 123 26 chr12 100741558 100741939 -20515591 - MTD LTR MaLR -1 418 1 4 1353 21 0 0 0 chr12 100741944 100741965 -20515565 + AT_rich Low_complexity Low_complexity 1 21 0 4 1353 400 264 65 9 chr12 100742701 100742808 -20514722 - PB1D7 SINE Alu -5 115 3 4 1353 458 215 119 40 chr12 100742830 100742956 -20514574 - B1F1 SINE Alu -2 147 12 4 1353 426 245 17 78 chr12 100747770 100747885 -20509645 - ID_B1 SINE B4 -115 109 2 4 1353 495 154 1 24 chr12 100748062 100748155 -20509375 + B1_Mur2 SINE Alu 56 147 -2 4 1353 618 224 20 40 chr12 100748181 100748330 -20509200 + B1_Mur4 SINE Alu 5 150 0 4 1353 198 0 0 0 chr12 100748341 100748363 -20509167 + (TAGA)n Simple_repeat Simple_repeat 2 23 0 4 1353 717 237 26 0 chr12 100748388 100748544 -20508986 - B3 SINE B2 -4 212 53 4 1353 689 272 18 52 chr12 100748575 100748804 -20508726 - ID_B1 SINE B4 -2 222 2 4 1353 387 0 0 0 chr12 100748839 100748882 -20508648 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1353 236 299 68 137 chr12 100749177 100749425 -20508105 - MLT1H2 LTR MaLR -115 374 144 4 1353 468 0 0 0 chr12 100750133 100750185 -20507345 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1353 295 221 43 14 chr12 100750187 100750256 -20507274 - ID4 SINE ID -11 72 2 5 1353 309 51 0 0 chr12 100750609 100750648 -20506882 + (TCC)n Simple_repeat Simple_repeat 3 41 0 5 1353 185 0 0 39 chr12 100751731 100751757 -20505773 + (CCCCCA)n Simple_repeat Simple_repeat 1 25 0 5 1353 253 231 108 0 chr12 100752025 100752090 -20505440 + ID4_ SINE ID 12 83 0 5 1353 342 0 0 0 chr12 100753142 100753180 -20504350 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1353 407 276 173 0 chr12 100753314 100753441 -20504089 - B4 SINE B4 -18 274 126 5 1353 369 189 52 72 chr12 100753482 100753579 -20503951 - B1_Mur2 SINE Alu -2 147 53 5 1353 586 156 14 111 chr12 100753588 100753732 -20503798 - B1_Mus1 SINE Alu -1 147 18 5 1353 303 264 11 32 chr12 100753691 100753785 -20503745 - B4 SINE B4 -200 92 1 5 1353 472 222 124 23 chr12 100754056 100754185 -20503345 + B1_Mur4 SINE Alu 2 143 -7 5 1353 1169 81 0 0 chr12 100754194 100754342 -20503188 + B1_Mus1 SINE Alu 1 148 0 5 1353 225 94 0 0 chr12 100754344 100754376 -20503154 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1353 431 292 22 7 chr12 100754380 100754518 -20503012 - B1F SINE Alu -9 140 1 5 1353 215 305 42 10 chr12 100755014 100755110 -20502420 - B2_Mm2 SINE B2 -95 100 2 5 1353 218 208 0 54 chr12 100755264 100755320 -20502210 - MIR SINE MIR -101 161 109 5 1353 225 0 0 0 chr12 100755835 100755860 -20501670 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1353 470 294 101 98 chr12 100756579 100756896 -20500634 + ORR1E LTR MaLR 3 320 -39 5 1353 276 274 102 42 chr12 100756907 100757025 -20500505 + MLT1C LTR MaLR 268 392 -75 5 1353 185 317 22 89 chr12 100757157 100757247 -20500283 + MIR3 SINE MIR 89 172 -36 5 1353 183 156 0 0 chr12 100757624 100757656 -20499874 + A-rich Low_complexity Low_complexity 5 36 0 5 1353 213 114 29 0 chr12 100758339 100758374 -20499156 + (TCTCC)n Simple_repeat Simple_repeat 1 36 0 5 1353 531 315 37 0 chr12 100758577 100758739 -20498791 - B3A SINE B2 -26 172 5 5 1353 8610 36 0 2 chr12 100758781 100760305 -20497225 - L1Md_F2 LINE L1 -4 6578 5057 5 1353 406 234 54 9 chr12 100760412 100760524 -20497006 - PB1D10 SINE Alu 0 117 1 5 1353 180 299 24 83 chr12 100761244 100761328 -20496202 + L2b LINE L2 3004 3082 -337 5 1353 203 275 134 5 chr12 100761401 100761537 -20495993 + L2b LINE L2 3227 3387 -39 5 1353 315 255 52 86 chr12 100761666 100761783 -20495747 - MLT1A1 LTR MaLR -13 395 252 5 1353 234 0 0 0 chr12 100762024 100762050 -20495480 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1353 622 313 9 14 chr12 100762704 100762921 -20494609 + ID_B1 SINE B4 1 216 -8 5 1353 628 228 75 40 chr12 100763599 100763773 -20493757 - B3A SINE B2 -4 194 15 5 1353 181 327 125 18 chr12 100763869 100763981 -20493549 - MIRb SINE MIR -114 154 31 5 1353 607 294 32 7 chr12 100764184 100764338 -20493192 - RSINE1 SINE B4 -4 161 4 5 1353 279 284 57 129 chr12 100764387 100764581 -20492949 + MT2B2 LTR ERVL 84 263 -321 5 1353 642 233 0 0 chr12 100764477 100764606 -20492924 + B1F1 SINE Alu 6 134 -15 5 1353 603 286 50 99 chr12 100765894 100766197 -20491333 + B4A SINE B4 1 288 -4 5 1353 325 278 87 34 chr12 100770351 100770500 -20487030 + L2 LINE L2 2209 2365 -1054 5 1353 864 164 208 10 chr12 100771972 100772169 -20485361 - MTD LTR MaLR -5 414 179 5 1353 4700 163 72 25 chr12 100772169 100773031 -20484499 - RMER19B LTR ERVK 0 902 1 5 1353 225 274 0 0 chr12 100773031 100773074 -20484456 - MTD LTR MaLR -235 184 142 5 1353 662 238 20 20 chr12 100773447 100773593 -20483937 - MTD LTR MaLR -261 158 13 5 1353 264 30 0 0 chr12 100773719 100773752 -20483778 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1353 1413 224 33 65 chr12 100774116 100774483 -20483047 + ORR1E LTR MaLR 5 359 0 5 1353 232 312 43 68 chr12 100774545 100774662 -20482868 - MLT1A1 LTR MaLR -3 405 292 5 1353 279 216 65 47 chr12 100774946 100775053 -20482477 + HAL1 LINE L1 1684 1792 -715 5 1353 213 237 0 33 chr12 100775216 100775277 -20482253 + GA-rich Low_complexity Low_complexity 6 64 0 5 1353 422 187 11 0 chr12 100776034 100776125 -20481405 + CT-rich Low_complexity Low_complexity 1 92 0 5 1353 262 321 0 0 chr12 100776166 100776247 -20481283 - L1MEg LINE L1 -595 5578 5498 5 1353 780 226 103 0 chr12 100776365 100776560 -20480970 - B3 SINE B2 -1 215 1 5 1353 397 330 95 70 chr12 100776627 100776913 -20480617 - L1MEg LINE L1 -945 5201 4913 5 1353 644 212 81 32 chr12 100776913 100777098 -20480432 + B3A SINE B2 2 195 -3 5 1353 1433 305 75 78 chr12 100777098 100777980 -20479550 - L1MEg LINE L1 -1234 4912 3991 5 1353 1247 48 0 0 chr12 100777980 100778127 -20479403 + B1_Mm SINE Alu 1 147 0 5 1353 1433 301 72 80 chr12 100778127 100778415 -20479115 - L1MEg LINE L1 -2156 3990 3747 5 1353 852 133 52 0 chr12 100778415 100778550 -20478980 - B1_Mus1 SINE Alu -6 142 1 5 1353 1433 301 72 80 chr12 100778550 100778571 -20478959 - L1MEg LINE L1 -2400 3746 3740 5 1353 692 220 51 28 chr12 100778571 100778749 -20478781 - B3A SINE B2 -16 182 1 5 1353 1433 301 72 80 chr12 100778749 100779115 -20478415 - L1MEg LINE L1 -2407 3739 3370 5 1353 1256 43 0 0 chr12 100779362 100779523 -20478007 + B2_Mm2 SINE B2 2 162 -33 5 1353 198 0 0 0 chr12 100779523 100779545 -20477985 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 1353 458 246 29 43 chr12 100779621 100779761 -20477769 - ID_B1 SINE B4 -1 223 86 5 1353 693 303 94 70 chr12 100779805 100780022 -20477508 - L1MEg LINE L1 -3049 3097 2873 5 1353 614 246 35 35 chr12 100780022 100780220 -20477310 - B3A SINE B2 0 198 1 5 1353 693 303 94 70 chr12 100780220 100780577 -20476953 - L1MEg LINE L1 -3274 2872 2509 5 1353 790 304 144 33 chr12 100780829 100781549 -20475981 - L1MEg LINE L1 -4036 2206 1407 5 1353 636 265 6 58 chr12 100781684 100781856 -20475674 + RSINE1 SINE B4 3 165 0 5 1353 757 203 7 13 chr12 100781885 100782035 -20475495 + B1_Mur1 SINE Alu 1 149 0 5 1353 384 22 0 0 chr12 100784209 100784254 -20473276 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1353 236 30 30 0 chr12 100784254 100784286 -20473244 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1353 463 252 305 0 chr12 100785041 100785192 -20472338 + ID_B1 SINE B4 8 204 -20 5 1353 355 287 29 29 chr12 100785379 100785519 -20472011 + MLT1J1 LTR MaLR 37 176 -268 5 1353 417 133 0 0 chr12 100785783 100785858 -20471672 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 1353 455 278 9 170 chr12 100785881 100785923 -20471607 - ID_B1 SINE B4 -45 179 145 5 1353 1187 62 7 0 chr12 100785923 100786069 -20471461 + B1_Mus1 SINE Alu 2 148 0 5 1353 455 278 9 170 chr12 100786069 100786238 -20471292 - ID_B1 SINE B4 -80 144 2 5 1353 542 288 29 0 chr12 100787417 100787556 -20469974 + ID_B1 SINE B4 82 224 0 5 1353 629 253 126 0 chr12 100787794 100787968 -20469562 + B3A SINE B2 2 197 -1 5 1353 497 275 29 7 chr12 100788005 100788144 -20469386 + RSINE1 SINE B4 2 143 -22 5 1353 378 107 0 0 chr12 100788165 100788221 -20469309 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1353 326 264 18 54 chr12 100788230 100788342 -20469188 + PB1D10 SINE Alu 3 110 -7 5 1353 198 0 0 0 chr12 100788635 100788657 -20468873 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1353 320 224 72 42 chr12 100788783 100788925 -20468605 + Lx9 LINE L1 5707 5890 -1754 5 1353 1009 174 59 30 chr12 100789391 100789593 -20467937 + B3 SINE B2 5 212 -4 5 1353 271 96 0 37 chr12 100789750 100789804 -20467726 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1353 378 0 0 0 chr12 100790100 100790142 -20467388 + (ATATG)n Simple_repeat Simple_repeat 4 45 0 5 1353 231 212 43 96 chr12 100790266 100790360 -20467170 + L1ME3A LINE L1 5637 5725 -448 5 1353 441 302 8 0 chr12 100790515 100790641 -20466889 - RSINE1 SINE B4 -8 157 31 5 1353 1019 120 74 0 chr12 100790643 100790818 -20466712 + ORR1B2 LTR MaLR 170 357 -10 5 1353 415 343 62 0 chr12 100790848 100791026 -20466504 + L1ME3A LINE L1 5913 6101 -72 5 1353 813 167 208 0 chr12 100791033 100791201 -20466329 + B3 SINE B2 2 204 -12 5 1353 186 43 0 0 chr12 100791201 100791224 -20466306 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1353 734 252 94 45 chr12 100792765 100793031 -20464499 + B4A SINE B4 3 281 -11 5 1353 591 241 0 0 chr12 100793052 100793214 -20464316 + (CA)n Simple_repeat Simple_repeat 1 162 0 5 1353 713 0 0 0 chr12 100793961 100794047 -20463483 - L1Md_A LINE L1 0 6582 6497 5 1354 674 186 2 0 chr12 100794953 100795095 -20462435 - B1_Mus1 SINE Alu -1 148 6 5 1354 642 250 128 0 chr12 100795352 100795540 -20461990 + ID_B1 SINE B4 5 216 -8 5 1354 204 188 0 0 chr12 100797495 100797527 -20460003 + polypyrimidine Low_complexity Low_complexity 4 35 0 5 1354 965 132 0 0 chr12 100798332 100798468 -20459062 + B1_Mur4 SINE Alu 2 137 -13 5 1354 198 0 0 0 chr12 100798468 100798490 -20459040 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 5 1354 638 209 148 23 chr12 100798500 100798676 -20458854 + B3A SINE B2 1 198 0 5 1354 23 0 0 0 chr12 100800856 100800879 -20456651 + AT_rich Low_complexity Low_complexity 1 23 0 5 1354 351 0 0 0 chr12 100800986 100801025 -20456505 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1354 23 33 0 0 chr12 100801745 100801775 -20455755 + GC_rich Low_complexity Low_complexity 1 30 0 5 1354 216 242 48 0 chr12 100802650 100802712 -20454818 + C-rich Low_complexity Low_complexity 2 66 0 5 1354 1263 73 85 0 chr12 100803528 100803546 -20453984 - B2_Mm1a SINE B2 -1 192 175 5 1354 297 0 0 0 chr12 100803546 100803579 -20453951 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 5 1354 1263 73 85 0 chr12 100803579 100803737 -20453793 - B2_Mm1a SINE B2 -19 174 2 5 1354 1482 211 94 33 chr12 100804510 100804708 -20452822 - MTD LTR MaLR -2 417 194 5 1354 372 119 0 0 chr12 100804708 100804767 -20452763 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1354 1482 211 94 33 chr12 100804767 100804961 -20452569 - MTD LTR MaLR -226 193 1 5 1354 413 218 0 0 chr12 100805781 100805868 -20451662 + PB1D7 SINE Alu 18 104 -16 5 1354 1278 108 21 0 chr12 100805868 100806054 -20451476 - B2_Mm2 SINE B2 -5 190 1 5 1354 385 186 164 26 chr12 100806054 100806082 -20451448 + B1F SINE Alu 114 148 -1 5 1354 676 251 78 0 chr12 100806129 100806208 -20451322 + ID_B1 SINE B4 1 93 -131 5 1354 325 328 35 9 chr12 100806208 100806322 -20451208 + PB1D10 SINE Alu 1 117 0 5 1354 2242 122 85 50 chr12 100806387 100806844 -20450686 + RMER4B LTR ERVK 113 585 0 5 1354 283 331 44 112 chr12 100806872 100806898 -20450632 - MLT2B4 LTR ERVL -59 497 484 6 1354 497 227 36 0 chr12 100806898 100807008 -20450522 + PB1D9 SINE Alu 2 115 -5 6 1354 881 314 86 8 chr12 100807008 100807410 -20450120 - MLT2B4 LTR ERVL -73 483 1 6 1354 432 0 0 0 chr12 100807723 100807771 -20449759 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1354 213 128 0 25 chr12 100808954 100808994 -20448536 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 6 1354 382 196 51 10 chr12 100809376 100809474 -20448056 + L1MD3 LINE L1 7809 7910 -85 6 1354 235 229 49 0 chr12 100810385 100810446 -20447084 + MLT1N2 LTR MaLR 8 71 -491 6 1354 1082 66 0 18 chr12 100810468 100810637 -20446893 + MTB LTR MaLR 1 166 -241 6 1354 1710 45 42 2 chr12 100810699 100810960 -20446570 + MTB LTR MaLR 143 419 0 6 1354 483 219 33 16 chr12 100811098 100811219 -20446311 - ID_B1 SINE B4 -21 203 81 6 1354 411 221 154 62 chr12 100811337 100811467 -20446063 + MTEa LTR MaLR 74 215 -164 6 1354 270 164 18 18 chr12 100811516 100811572 -20445958 + MTEa LTR MaLR 310 365 -14 6 1354 750 290 52 35 chr12 100813323 100813609 -20443921 - B4A SINE B4 0 292 2 6 1354 300 361 153 43 chr12 100813740 100813995 -20443535 - B4A SINE B4 -8 284 2 6 1354 1932 275 71 48 chr12 100814842 100815575 -20441955 + Lx9 LINE L1 6803 7552 -92 6 1354 529 172 189 0 chr12 100815581 100815703 -20441827 - URR1A DNA MER1_type -81 145 1 6 1354 502 376 55 24 chr12 100815739 100816194 -20441336 - L2 LINE L2 -541 2878 2410 6 1354 977 101 7 0 chr12 100816282 100816430 -20441100 + (TTTCC)n Simple_repeat Simple_repeat 3 151 0 6 1354 1131 68 0 7 chr12 100816435 100816582 -20440948 - B1_Mus1 SINE Alu 0 148 3 6 1354 29 0 0 0 chr12 100816598 100816627 -20440903 + AT_rich Low_complexity Low_complexity 1 29 0 6 1354 521 152 64 37 chr12 100816744 100816853 -20440677 + B1_Mur3 SINE Alu 38 149 0 6 1354 180 0 0 0 chr12 100817225 100817245 -20440285 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1354 304 360 85 5 chr12 100818356 100818568 -20438962 - Tigger15a DNA TcMar -404 311 83 6 1354 189 74 0 0 chr12 100819007 100819034 -20438496 + (GGA)n Simple_repeat Simple_repeat 1 27 0 6 1354 984 189 17 11 chr12 100819216 100819393 -20438137 - B3A SINE B2 -16 182 5 6 1354 325 299 65 0 chr12 100819400 100819507 -20438023 - PB1D7 SINE Alu 0 120 7 6 1354 396 0 0 0 chr12 100819635 100819679 -20437851 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1354 466 298 78 13 chr12 100819679 100819832 -20437698 - B4 SINE B4 -23 269 107 6 1354 270 0 0 0 chr12 100820685 100820715 -20436815 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 6 1354 962 175 80 27 chr12 100820716 100820904 -20436626 - B3 SINE B2 -17 199 2 6 1354 35 24 0 0 chr12 100820918 100820960 -20436570 + AT_rich Low_complexity Low_complexity 1 42 0 6 1354 245 103 0 0 chr12 100821082 100821121 -20436409 + B1_Mus1 SINE Alu 12 50 -98 6 1354 380 257 10 2 chr12 100821107 100821210 -20436320 - B4 SINE B4 -54 111 3 6 1354 244 322 126 33 chr12 100821890 100821944 -20435586 - RSINE1 SINE B4 0 165 3 6 1354 532 168 0 0 chr12 100821944 100822039 -20435491 - B3A SINE B2 -102 96 2 6 1354 467 233 95 159 chr12 100822358 100822757 -20434773 + RMER2 LTR ERV1 1 514 -53 6 1354 1266 56 6 16 chr12 100822874 100823056 -20434474 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 1354 274 397 8 0 chr12 100823095 100823221 -20434309 - MER117 DNA MER1_type -2 195 69 6 1354 363 138 0 0 chr12 100823327 100823385 -20434145 + RMER6D LTR ERVK 1 58 -662 6 1354 799 144 71 13 chr12 100823428 100823583 -20433947 + URR1A DNA MER1_type 62 225 -1 6 1354 721 309 52 22 chr12 100824011 100824196 -20433334 - B4A SINE B4 -13 279 85 6 1354 341 22 22 0 chr12 100824196 100824242 -20433288 + (TTG)n Simple_repeat Simple_repeat 2 48 0 6 1354 721 309 52 22 chr12 100824242 100824327 -20433203 - B4A SINE B4 -208 84 1 6 1354 539 66 0 0 chr12 100825124 100825200 -20432330 + B1_Mus2 SINE Alu 72 147 0 6 1354 621 262 42 70 chr12 100825242 100825529 -20432001 + MER33 DNA MER1_type 3 281 -43 6 1354 283 213 0 0 chr12 100825528 100825589 -20431941 + PB1D10 SINE Alu 36 96 -21 6 1354 306 0 0 0 chr12 100826016 100826050 -20431480 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1354 420 20 0 0 chr12 100826050 100826098 -20431432 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1354 419 275 32 24 chr12 100826098 100826221 -20431309 - RSINE1 SINE B4 -40 125 2 6 1354 209 33 33 0 chr12 100826697 100826727 -20430803 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1354 609 14 0 0 chr12 100826758 100826828 -20430702 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 1354 219 233 33 0 chr12 100827050 100827110 -20430420 - B4 SINE B4 -228 64 3 6 1354 545 299 37 1 chr12 100827598 100827792 -20429738 - B3A SINE B2 -1 215 13 6 1354 540 223 18 0 chr12 100827794 100827906 -20429624 - PB1D10 SINE Alu -1 116 3 6 1354 883 250 39 0 chr12 100827943 100828147 -20429383 - B3 SINE B2 0 216 5 6 1354 228 67 0 0 chr12 100828438 100828468 -20429062 + (TTA)n Simple_repeat Simple_repeat 2 31 0 6 1354 271 231 15 0 chr12 100828668 100828733 -20428797 + GA-rich Low_complexity Low_complexity 4 69 0 6 1354 590 267 126 27 chr12 100828757 100829019 -20428511 + MLT2D LTR ERVL 1 288 -126 6 1354 985 284 38 56 chr12 100829051 100829088 -20428442 + ERVL-int LTR ERVL 3649 3686 -2071 6 1354 1513 48 11 0 chr12 100829088 100829275 -20428255 - B2_Mm1t SINE B2 -3 190 2 6 1354 985 284 38 56 chr12 100829275 100829610 -20427920 + ERVL-int LTR ERVL 3687 4014 -1743 6 1354 821 229 36 15 chr12 100829613 100829808 -20427722 + ID_B1 SINE B4 5 203 -21 6 1354 575 157 9 0 chr12 100829818 100829926 -20427604 + G-rich Low_complexity Low_complexity 5 113 0 6 1354 840 20 0 0 chr12 100829927 100830025 -20427505 + (GGAGA)n Simple_repeat Simple_repeat 3 100 0 6 1354 1274 282 140 9 chr12 100830078 100830543 -20426987 + ERVL-int LTR ERVL 4118 4643 -1114 6 1354 230 323 29 48 chr12 100830543 100830647 -20426883 - PB1D9 SINE Alu 0 120 19 6 1354 579 277 106 27 chr12 100830666 100830976 -20426554 + ERVL-int LTR ERVL 4532 4948 -766 6 1354 4726 156 43 34 chr12 100830977 100831855 -20425675 + RMER19B LTR ERVK 1 886 -16 6 1354 1452 55 28 0 chr12 100831855 100832037 -20425493 + B2_Mm2 SINE B2 2 188 -7 6 1354 804 291 43 14 chr12 100832072 100832354 -20425176 + ERVL-int LTR ERVL 4996 5285 -472 6 1354 300 172 0 0 chr12 100832402 100832460 -20425070 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1354 1307 81 42 26 chr12 100833628 100833818 -20423712 + B2_Mm2 SINE B2 2 194 -1 6 1354 344 152 167 0 chr12 100833824 100833890 -20423640 + B3A SINE B2 1 77 -121 6 1354 249 330 83 0 chr12 100833903 100834012 -20423518 + ORR1E LTR MaLR 66 183 -176 6 1354 309 281 73 0 chr12 100834160 100834242 -20423288 - MER5A DNA MER1_type -101 88 1 6 1354 810 237 20 55 chr12 100834276 100834477 -20423053 - B3A SINE B2 0 198 5 6 1354 225 0 0 0 chr12 100835016 100835041 -20422489 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1354 581 278 68 0 chr12 100835404 100835537 -20421993 + RSINE1 SINE B4 2 143 -22 6 1354 308 216 39 39 chr12 100835591 100835668 -20421862 + HAL1-3A_ME LINE L1 1975 2051 -807 6 1354 607 200 210 22 chr12 100835835 100835973 -20421557 - B3 SINE B2 -4 212 49 6 1354 241 234 0 0 chr12 100836563 100836610 -20420920 - B3 SINE B2 -161 55 9 6 1354 245 232 71 162 chr12 100836589 100836645 -20420885 - YREP_Mm Unknown Unknown -1451 361 320 6 1354 849 143 0 0 chr12 100836645 100836771 -20420759 + B1_Mus1 SINE Alu 1 126 -22 6 1354 430 92 60 22 chr12 100837082 100837216 -20420314 + (CAAA)n Simple_repeat Simple_repeat 2 140 0 6 1354 812 255 15 20 chr12 100838382 100838578 -20418952 - MER58A DNA MER1_type 0 224 30 6 1354 378 0 0 0 chr12 100838741 100838783 -20418747 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1354 238 346 94 9 chr12 100839744 100839977 -20417553 + L2 LINE L2 2756 3008 -411 6 1354 226 359 75 53 chr12 100840080 100840345 -20417185 - LTR33 LTR ERVL -244 271 1 6 1354 266 289 78 13 chr12 100840869 100840946 -20416584 + MIR3 SINE MIR 110 191 -17 6 1354 210 71 0 0 chr12 100841455 100841483 -20416047 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1354 1886 299 55 30 chr12 100843025 100843722 -20413808 - Lx8 LINE L1 -205 7268 6555 6 1354 274 316 13 0 chr12 100844224 100844300 -20413230 + MER63C DNA AcHobo 312 388 -542 6 1354 2002 108 21 63 chr12 100844387 100844722 -20412808 - ORR1A4 LTR MaLR -8 321 1 6 1354 260 339 90 18 chr12 100845049 100845160 -20412370 + MER3 DNA MER1_type 3 121 -88 6 1354 524 360 62 8 chr12 100845129 100845373 -20412157 + MER33 DNA MER1_type 45 301 -23 6 1354 972 283 31 34 chr12 100846027 100846320 -20411210 + B4A SINE B4 1 292 0 6 1354 219 167 0 0 chr12 100846799 100846835 -20410695 + T-rich Low_complexity Low_complexity 1 36 0 6 1354 185 94 31 0 chr12 100846995 100847027 -20410503 + (TTC)n Simple_repeat Simple_repeat 2 34 0 6 1354 216 0 0 0 chr12 100847719 100847743 -20409787 + (GAA)n Simple_repeat Simple_repeat 2 25 0 6 1354 890 238 41 19 chr12 100849328 100849598 -20407932 + B4A SINE B4 3 278 -14 6 1354 422 65 0 16 chr12 100850182 100850245 -20407285 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1354 306 0 0 0 chr12 100850245 100850278 -20407252 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1354 1076 252 14 98 chr12 100850301 100850596 -20406934 - B4A SINE B4 -22 270 1 6 1354 613 92 10 10 chr12 100851916 100852015 -20405515 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 6 1354 215 118 0 0 chr12 100852015 100852049 -20405481 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1354 1158 82 0 0 chr12 100852049 100852208 -20405322 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 6 1354 327 240 40 13 chr12 100852208 100852284 -20405246 - ID_B1 SINE B4 -12 212 135 6 1354 233 303 52 139 chr12 100852284 100852323 -20405207 - PB1D10 SINE Alu -12 105 1 6 1354 749 276 34 72 chr12 100853545 100853752 -20403778 - ID_B1 SINE B4 -24 200 2 6 1354 558 182 6 164 chr12 100853780 100853957 -20403573 - B1F SINE Alu 0 149 1 7 1354 239 164 0 47 chr12 100854055 100854119 -20403411 + A-rich Low_complexity Low_complexity 5 65 0 7 1354 312 111 0 0 chr12 100855391 100855445 -20402085 + (CAGAGA)n Simple_repeat Simple_repeat 5 58 0 7 1354 382 296 120 63 chr12 100855487 100855678 -20401852 - B4 SINE B4 -90 202 1 7 1354 358 193 43 64 chr12 100856139 100856233 -20401297 + RSINE1 SINE B4 13 104 -61 7 1354 450 0 0 0 chr12 100856257 100856307 -20401223 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1354 192 256 119 24 chr12 100856346 100856430 -20401100 + MIRb SINE MIR 124 215 -53 7 1354 262 256 53 60 chr12 100856528 100856661 -20400869 - RMER15 LTR ERVL -111 464 333 7 1354 186 43 0 0 chr12 100858522 100858545 -20398985 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1354 322 250 118 0 chr12 100859011 100859087 -20398443 + MER58B DNA MER1_type 256 340 -1 7 1354 363 167 0 0 chr12 100859294 100859360 -20398170 + (TA)n Simple_repeat Simple_repeat 1 66 0 7 1354 737 199 270 22 chr12 100859612 100859914 -20397616 - ORR1D1 LTR MaLR 0 379 1 7 1354 1006 101 270 0 chr12 100860495 100860673 -20396857 - URR1A DNA MER1_type 0 226 1 7 1354 225 0 0 0 chr12 100860961 100860986 -20396544 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 7 1354 1668 21 21 0 chr12 100861048 100861237 -20396293 - B2_Mm1a SINE B2 0 193 1 7 1354 272 288 43 43 chr12 100862106 100862222 -20395308 - PB1D7 SINE Alu 0 120 5 7 1354 255 254 0 53 chr12 100862707 100862782 -20394748 + MTEb LTR MaLR 309 379 0 7 1354 1360 66 32 16 chr12 100862967 100863152 -20394378 - B2_Mm2 SINE B2 -6 189 2 7 1354 1263 101 15 55 chr12 100863220 100863419 -20394111 + B2_Mm2 SINE B2 1 191 -4 7 1354 235 224 85 17 chr12 100864628 100864687 -20392843 + PB1D10 SINE Alu 47 109 -8 7 1354 444 268 2 21 chr12 100864677 100864827 -20392703 - B1F2 SINE Alu -6 143 1 7 1354 321 273 40 40 chr12 100864865 100864991 -20392539 - RSINE1 SINE B4 -35 130 5 7 1354 22 0 0 0 chr12 100866231 100866253 -20391277 + GC_rich Low_complexity Low_complexity 1 22 0 7 1354 288 300 26 52 chr12 100867206 100867322 -20390208 - LTR16A1 LTR ERVL -40 416 304 7 1354 960 291 89 40 chr12 100868357 100868704 -20388826 - MTEa LTR MaLR -15 364 1 7 1354 380 272 46 46 chr12 100868710 100868841 -20388689 - MTEa-int LTR MaLR -23 1557 1427 7 1354 491 116 0 95 chr12 100868844 100868939 -20388591 + PB1D9 SINE Alu 35 120 0 7 1354 2257 271 155 31 chr12 100868958 100869796 -20387734 - MTEa-int LTR MaLR -561 1019 78 7 1354 386 278 94 53 chr12 100870016 100870082 -20387448 - MERVL-int LTR ERVL -1130 4355 4275 7 1354 303 49 0 0 chr12 100870082 100870123 -20387407 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 7 1354 386 278 94 53 chr12 100870123 100870227 -20387303 - MERVL-int LTR ERVL -1211 4274 4179 7 1354 991 114 24 24 chr12 100870898 100871310 -20386220 + (TATG)n Simple_repeat Simple_repeat 1 412 0 7 1354 715 285 14 52 chr12 100871315 100871526 -20386004 - B3 SINE B2 -13 203 1 7 1354 1214 61 0 0 chr12 100872669 100872817 -20384713 + B1_Mus1 SINE Alu 1 148 0 7 1354 312 91 0 0 chr12 100872827 100872871 -20384659 + (A)n Simple_repeat Simple_repeat 1 44 0 7 1354 723 224 181 23 chr12 100872985 100873200 -20384330 + B4A SINE B4 1 249 -43 7 1354 231 204 0 0 chr12 100873285 100873339 -20384191 + (ACTG)n Simple_repeat Simple_repeat 4 57 0 7 1354 359 299 25 33 chr12 100874119 100874240 -20383290 - RSINE1 SINE B4 -36 129 10 7 1354 378 232 321 0 chr12 100874264 100874376 -20383154 - B1_Mur2 SINE Alu 0 149 2 7 1354 359 234 464 8 chr12 100874573 100874698 -20382832 - B3A SINE B2 -16 182 1 7 1354 333 68 0 0 chr12 100874904 100874948 -20382582 + (CCCCCT)n Simple_repeat Simple_repeat 6 49 0 7 1354 913 28 0 0 chr12 100874964 100875073 -20382457 - B1_Mus1 SINE Alu 0 148 40 7 1354 402 182 94 60 chr12 100875007 100875124 -20382406 - RLTR25B LTR ERVK -519 509 389 7 1354 386 263 212 18 chr12 100875066 100875236 -20382294 - MLT1A LTR MaLR -162 212 10 7 1354 212 276 97 69 chr12 100875307 100875344 -20382186 - MIR3 SINE MIR -19 189 154 7 1354 1394 156 27 5 chr12 100875344 100875563 -20381967 - URR1B DNA MER1_type 0 225 2 7 1354 212 276 97 69 chr12 100875563 100875669 -20381861 - MIR3 SINE MIR -55 153 42 7 1354 404 274 56 62 chr12 100876110 100876289 -20381241 - RLTR23 LTR ERV1 0 430 253 7 1354 885 235 10 5 chr12 100877079 100877280 -20380250 + B3 SINE B2 2 203 -13 7 1354 1271 183 4 4 chr12 100877460 100877685 -20379845 - URR1B DNA MER1_type 0 225 1 7 1354 476 32 16 0 chr12 100877797 100877859 -20379671 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1354 206 374 11 0 chr12 100878351 100878442 -20379088 - L2 LINE L2 -559 2860 2769 7 1354 244 343 29 19 chr12 100879527 100879631 -20377899 + L2c LINE L2 3066 3170 -217 7 1354 414 0 0 0 chr12 100879988 100880034 -20377496 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1354 1344 137 172 33 chr12 100880112 100880219 -20377311 - Lx9 LINE L1 -12 7632 7519 7 1354 414 0 0 0 chr12 100880219 100880265 -20377265 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1354 345 24 0 0 chr12 100880265 100880306 -20377224 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1354 1344 137 172 33 chr12 100880306 100880500 -20377030 - Lx9 LINE L1 -126 7518 7290 7 1354 2814 173 39 10 chr12 100880499 100881013 -20376517 - Lx9 LINE L1 -563 7081 6553 7 1354 21 36 0 0 chr12 100881200 100881228 -20376302 + GC_rich Low_complexity Low_complexity 1 28 0 7 1354 406 296 40 58 chr12 100881581 100881857 -20375673 + RLTR45-int LTR ERVK 169 439 -6805 7 1354 731 302 68 52 chr12 100881922 100882422 -20375108 + RNERVK23-int LTR ERVK 4887 5704 -2513 7 1354 4907 52 18 5 chr12 100883270 100883888 -20373642 + LSU-rRNA_Hsa rRNA rRNA 1311 1936 -3099 7 1354 504 310 10 26 chr12 100884367 100884559 -20372971 + RodERV21-int LTR ERV1 4400 4588 -403 7 1354 932 224 47 51 chr12 100885505 100885740 -20371790 - Lx9 LINE L1 -1064 6580 6347 7 1354 268 189 13 13 chr12 100885740 100885815 -20371715 + CT-rich Low_complexity Low_complexity 2 76 0 7 1354 782 249 12 29 chr12 100885864 100886034 -20371496 - B4 SINE B4 -81 211 45 7 1354 212 237 0 0 chr12 100886254 100886292 -20371238 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1354 565 274 76 23 chr12 100886303 100886565 -20370965 - B4A SINE B4 -14 278 3 7 1354 260 265 101 64 chr12 100886568 100886659 -20370871 - Helitron3Na_Mam RC Helitron -363 123 27 7 1354 342 0 0 0 chr12 100886659 100886697 -20370833 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 7 1354 1072 53 15 0 chr12 100886697 100886830 -20370700 - B1_Mm SINE Alu -12 135 1 7 1354 260 265 101 64 chr12 100886830 100886846 -20370684 - Helitron3Na_Mam RC Helitron -460 26 12 7 1354 539 270 45 17 chr12 100886880 100887057 -20370473 - B3A SINE B2 -16 182 1 7 1354 476 0 71 12 chr12 100887336 100887421 -20370109 + (TG)n Simple_repeat Simple_repeat 2 91 0 7 1354 252 0 0 0 chr12 100887760 100887788 -20369742 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1354 504 48 0 0 chr12 100887900 100887963 -20369567 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 1354 647 209 0 23 chr12 100887965 100888097 -20369433 - B1_Mur3 SINE Alu -20 129 1 7 1354 3521 23 2 2 chr12 100889019 100889415 -20368115 + MTA_Mm LTR MaLR 1 396 0 7 1354 581 230 0 3 chr12 100889913 100890038 -20367492 + ID_B1 SINE B4 94 212 -12 7 1354 368 250 0 0 chr12 100890050 100890122 -20367408 + ID4_ SINE ID 1 72 -11 7 1354 831 190 0 0 chr12 100890124 100890355 -20367175 + (CA)n Simple_repeat Simple_repeat 1 231 0 7 1354 213 279 69 11 chr12 100891086 100891173 -20366357 + L2 LINE L2 2805 2896 -523 7 1354 435 219 59 0 chr12 100891364 100891483 -20366047 + MLT1B LTR MaLR 9 134 -256 7 1354 747 158 6 22 chr12 100891484 100891665 -20365865 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1354 333 198 0 0 chr12 100891678 100891759 -20365771 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 1354 415 306 61 10 chr12 100891759 100891957 -20365573 + MLT1B LTR MaLR 181 388 -2 7 1354 21 0 0 0 chr12 100892515 100892536 -20364994 + AT_rich Low_complexity Low_complexity 1 21 0 7 1354 1497 28 66 0 chr12 100892956 100893138 -20364392 + B2_Mm2 SINE B2 1 194 -1 7 1354 290 312 97 87 chr12 100893900 100894107 -20363423 + MLT1K LTR MaLR 6 214 -381 7 1354 935 230 30 0 chr12 100894670 100894870 -20362660 - B4 SINE B4 -2 290 85 7 1354 200 86 29 0 chr12 100896016 100896051 -20361479 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1354 527 289 0 20 chr12 100896053 100896205 -20361325 - B3A SINE B2 -47 151 3 7 1354 246 239 70 0 chr12 100896245 100896316 -20361214 - L1M3 LINE L1 -882 5258 5183 7 1354 200 116 45 23 chr12 100896333 100896377 -20361153 + (TTAA)n Simple_repeat Simple_repeat 1 45 0 7 1354 828 208 44 0 chr12 100896404 100896587 -20360943 - B3 SINE B2 -24 192 2 7 1354 303 272 49 0 chr12 100896601 100896682 -20360848 - B1F2 SINE Alu -61 88 4 7 1354 443 242 58 52 chr12 100896735 100896879 -20360651 - L1M3 LINE L1 -1072 5068 4923 7 1354 1567 119 135 62 chr12 100896879 100897183 -20360347 + ORR1A3 LTR MaLR 1 326 0 7 1354 443 242 58 52 chr12 100897183 100897212 -20360318 - L1M3 LINE L1 -1218 4922 4894 7 1354 990 187 64 156 chr12 100897353 100897726 -20359804 - Lx7 LINE L1 -2 7694 7356 7 1354 13753 122 60 23 chr12 100897748 100898537 -20358993 - L1_Mur3 LINE L1 -2078 3802 3010 7 1354 518 43 14 0 chr12 100898537 100898606 -20358924 + (TC)n Simple_repeat Simple_repeat 2 71 0 7 1354 13753 122 60 23 chr12 100898606 100899468 -20358062 - L1_Mur3 LINE L1 -2871 3009 2087 7 1354 450 0 0 0 chr12 100899468 100899518 -20358012 + (TAG)n Simple_repeat Simple_repeat 3 52 0 7 1354 13753 132 47 21 chr12 100899518 100900831 -20356699 - L1_Mur3 LINE L1 -3794 2086 735 7 1354 268 328 106 19 chr12 100900894 100901102 -20356428 - L1MEc LINE L1 -3725 2594 2369 7 1354 232 270 13 13 chr12 100901119 100901194 -20356336 - L1MEc LINE L1 -4073 2327 2253 7 1354 195 42 0 0 chr12 100901238 100901262 -20356268 + (TTG)n Simple_repeat Simple_repeat 1 24 0 7 1354 22 56 0 0 chr12 100901318 100901354 -20356176 + AT_rich Low_complexity Low_complexity 1 36 0 7 1354 2010 198 68 5 chr12 100901354 100901751 -20355779 - Lx5 LINE L1 0 7050 6629 7 1354 3358 143 63 16 chr12 100901743 100902318 -20355212 + Lx5 LINE L1 5873 6474 -576 7 1354 239 149 66 26 chr12 100902334 100902410 -20355120 + (TTATA)n Simple_repeat Simple_repeat 4 82 0 7 1354 204 142 24 55 chr12 100902410 100902537 -20354993 + (TAA)n Simple_repeat Simple_repeat 3 125 0 7 1354 678 125 0 0 chr12 100902551 100902647 -20354883 + Lx5 LINE L1 6452 6547 -503 7 1354 258 203 0 17 chr12 100902650 100902710 -20354820 + Lx9 LINE L1 7104 7162 -482 8 1354 363 327 18 55 chr12 100902743 100902908 -20354622 - ID_B1 SINE B4 -56 168 10 8 1354 262 277 57 28 chr12 100902915 100903056 -20354474 - L1MEc LINE L1 -4351 2049 1905 7 1354 370 313 0 0 chr12 100903061 100903160 -20354370 - ID_B1 SINE B4 -2 222 124 8 1354 246 282 205 0 chr12 100903213 100903330 -20354200 - L1MEc LINE L1 -4548 1867 1727 7 1354 688 239 69 6 chr12 100903801 100903840 -20353690 - B3A SINE B2 -27 171 122 8 1354 360 0 0 0 chr12 100903840 100903880 -20353650 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1354 688 239 69 6 chr12 100903880 100904000 -20353530 - B3A SINE B2 -77 121 2 8 1354 326 325 138 44 chr12 100904040 100904562 -20352968 - L1MEc LINE L1 -4832 1568 998 7 1354 518 290 58 0 chr12 100904640 100904795 -20352735 - RSINE1 SINE B4 0 165 2 8 1354 400 341 83 64 chr12 100905142 100905577 -20351953 + MLT1D LTR MaLR 3 445 -60 8 1354 409 128 11 75 chr12 100905598 100905691 -20351839 - B1F SINE Alu 0 149 63 8 1354 433 157 3 31 chr12 100905668 100905778 -20351752 + MTD LTR MaLR 273 405 -14 8 1354 226 205 0 0 chr12 100906933 100906972 -20350558 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1354 548 234 57 76 chr12 100906972 100907129 -20350401 - RSINE1 SINE B4 0 165 12 8 1354 201 259 34 17 chr12 100907161 100907279 -20350251 + (TA)n Simple_repeat Simple_repeat 2 121 0 8 1354 226 324 50 80 chr12 100907479 100907717 -20349813 - MLT1J1 LTR MaLR -16 428 198 8 1354 508 298 201 4 chr12 100907753 100907992 -20349538 - B4A SINE B4 -4 288 3 8 1354 402 21 0 0 chr12 100908188 100908235 -20349295 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1354 251 323 21 0 chr12 100910241 100910334 -20347196 - L2 LINE L2 -1051 2368 2274 8 1354 23 0 0 0 chr12 100910387 100910410 -20347120 + AT_rich Low_complexity Low_complexity 1 23 0 8 1354 1001 168 113 0 chr12 100910888 100911091 -20346439 + URR1A DNA MER1_type 1 226 0 8 1354 403 314 70 10 chr12 100911202 100911492 -20346038 + MLT1B LTR MaLR 38 387 -3 8 1354 432 0 0 0 chr12 100911616 100911664 -20345866 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1354 537 206 0 19 chr12 100912240 100912344 -20345186 + B1_Mur2 SINE Alu 40 141 -8 8 1354 1157 112 11 0 chr12 100912655 100912834 -20344696 + L1Md_F2 LINE L1 6402 6582 0 8 1354 8992 192 84 50 chr12 100912834 100912915 -20344615 - Lx7 LINE L1 -8 7688 7587 8 1354 1812 129 96 101 chr12 100912915 100912987 -20344543 - ORR1B1 LTR MaLR 0 394 351 8 1354 1175 49 7 0 chr12 100912987 100913131 -20344399 - B1_Mus2 SINE Alu 0 147 3 8 1354 1812 129 96 101 chr12 100913131 100913454 -20344076 - ORR1B1 LTR MaLR -44 350 1 8 1354 10792 172 56 37 chr12 100913454 100916173 -20341357 - Lx7 LINE L1 -110 7586 4811 8 1354 3123 73 2 8 chr12 100916173 100916571 -20340959 - MTA_Mm LTR MaLR 0 396 1 8 1354 10792 140 13 17 chr12 100916571 100917337 -20340193 - Lx7 LINE L1 -1070 4810 4054 8 1354 2994 101 8 29 chr12 100917337 100917817 -20339713 - RMER16 LTR ERVK 0 533 64 8 1354 3373 128 35 24 chr12 100917837 100918428 -20339102 - Lx7 LINE L1 -1821 4059 3462 8 1354 2555 151 9 14 chr12 100918687 100919118 -20338412 - Lx4B LINE L1 -8 7050 6622 8 1354 1777 129 14 0 chr12 100919118 100919397 -20338133 - Lx7 LINE L1 -2403 3477 3195 8 1354 1124 156 22 4 chr12 100919399 100919625 -20337905 - L1_Mur3 LINE L1 -2520 3360 3131 8 1354 3109 151 42 10 chr12 100919660 100920237 -20337293 + RLTR17 LTR ERVK 98 692 0 8 1354 2801 136 4 17 chr12 100920239 100920711 -20336819 - L1_Mur3 LINE L1 -2747 3133 2668 8 1354 21 0 0 0 chr12 100920835 100920856 -20336674 + AT_rich Low_complexity Low_complexity 1 21 0 8 1354 438 254 14 21 chr12 100921018 100921159 -20336371 - RCHARR1 DNA MER1_type 0 974 835 8 1354 465 269 27 54 chr12 100921187 100921336 -20336194 + B3A SINE B2 1 145 -53 8 1354 369 0 0 0 chr12 100921338 100921379 -20336151 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1354 204 238 0 0 chr12 100921379 100921421 -20336109 + GA-rich Low_complexity Low_complexity 1 42 0 8 1354 2476 262 74 22 chr12 100921422 100922233 -20335297 - RCHARR1 DNA MER1_type -109 865 13 8 1354 687 244 147 21 chr12 100922328 100922385 -20335145 + MLT1B LTR MaLR 1 59 -331 8 1354 1068 120 171 5 chr12 100922385 100922578 -20334952 - URR1B DNA MER1_type 0 225 1 8 1354 687 244 147 21 chr12 100922578 100922805 -20334725 + MLT1B LTR MaLR 60 321 -69 8 1354 500 335 53 32 chr12 100922951 100923330 -20334200 - L1M5 LINE L1 -564 5676 5290 8 1354 579 309 95 38 chr12 100923673 100924043 -20333487 - L4 LINE RTE -1032 997 607 8 1354 250 325 69 29 chr12 100924814 100924988 -20332542 - L2 LINE L2 -462 2957 2777 8 1355 1524 112 0 43 chr12 100925724 100925957 -20331573 + URR1A DNA MER1_type 2 224 -2 8 1355 791 244 0 6 chr12 100926278 100926455 -20331075 + ORR1E LTR MaLR 1 176 -183 8 1355 42 0 0 0 chr12 100926522 100926564 -20330966 + AT_rich Low_complexity Low_complexity 1 42 0 8 1355 3313 83 13 2 chr12 100926578 100927037 -20330493 - L1_Mus3 LINE L1 -7 6631 6168 8 1355 565 261 50 69 chr12 100927041 100927243 -20330287 + ORR1E LTR MaLR 162 359 0 8 1355 306 0 0 0 chr12 100927854 100927888 -20329642 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 8 1355 353 259 36 18 chr12 100928300 100928410 -20329120 + MTEb LTR MaLR 268 379 0 8 1355 202 314 23 11 chr12 100928460 100928547 -20328983 + MIRb SINE MIR 155 242 -26 8 1355 2982 145 43 12 chr12 100928588 100929099 -20328431 - RLTR11A2 LTR ERVK 0 527 1 8 1355 37 23 0 0 chr12 100929100 100929144 -20328386 + AT_rich Low_complexity Low_complexity 1 44 0 8 1355 351 0 0 0 chr12 100929150 100929189 -20328341 + (TTA)n Simple_repeat Simple_repeat 3 41 0 8 1355 337 162 126 0 chr12 100929394 100929505 -20328025 + Lx9 LINE L1 7519 7643 -1 8 1355 351 0 0 0 chr12 100929821 100929860 -20327670 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1355 212 244 22 0 chr12 100929950 100929995 -20327535 + polypyrimidine Low_complexity Low_complexity 3 48 0 8 1355 438 263 51 7 chr12 100930263 100930380 -20327150 + MER58A DNA MER1_type 39 161 -63 8 1355 427 233 202 19 chr12 100930380 100930647 -20326883 - MER33 DNA MER1_type -3 321 6 8 1355 360 111 0 0 chr12 100930662 100930725 -20326805 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 8 1355 26 0 0 0 chr12 100930744 100930770 -20326760 + AT_rich Low_complexity Low_complexity 1 26 0 8 1355 243 0 0 0 chr12 100930912 100930939 -20326591 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1355 1356 199 173 0 chr12 100931278 100931624 -20325906 - MTD LTR MaLR -13 406 1 8 1355 24 53 0 0 chr12 100932070 100932108 -20325422 + AT_rich Low_complexity Low_complexity 1 38 0 8 1355 423 0 0 0 chr12 100932830 100932877 -20324653 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1355 180 77 0 0 chr12 100933052 100933078 -20324452 + (CACCAT)n Simple_repeat Simple_repeat 4 29 0 8 1355 267 31 0 0 chr12 100933892 100933924 -20323606 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 8 1355 3373 120 58 9 chr12 100934177 100934715 -20322815 + LTRIS2 LTR ERV1 1 564 0 8 1355 2452 147 65 12 chr12 100935754 100936154 -20321376 - MTC LTR MaLR 0 421 1 8 1355 407 316 48 72 chr12 100936238 100936446 -20321084 - MER20 DNA MER1_type -13 206 4 8 1355 2587 58 0 0 chr12 100936874 100937184 -20320346 - RLTR10E LTR ERVK -1 310 1 8 1355 318 171 179 24 chr12 100937242 100937326 -20320204 - PB1D9 SINE Alu -17 103 7 8 1355 429 302 180 31 chr12 100937510 100937865 -20319665 + MLT1A1 LTR MaLR 1 408 0 8 1355 189 327 0 88 chr12 100939110 100939224 -20318306 + L2c LINE L2 3270 3373 -14 8 1355 325 302 19 0 chr12 100939836 100939942 -20317588 - MIR SINE MIR -130 132 25 8 1355 496 232 161 44 chr12 100940031 100940211 -20317319 - B3 SINE B2 -12 204 4 8 1355 395 312 44 0 chr12 100940579 100940739 -20316791 + MLT1B LTR MaLR 224 390 0 8 1355 2562 58 3 58 chr12 100942231 100942577 -20314953 - ORR1A2 LTR MaLR 0 327 1 8 1355 1457 102 70 21 chr12 100942685 100942926 -20314604 - Lx LINE L1 -71 6583 6331 8 1355 1741 90 0 0 chr12 100942920 100943154 -20314376 - Lx LINE L1 -566 6088 5855 8 1355 1515 36 0 0 chr12 100943463 100943879 -20313651 + (TGG)n Simple_repeat Simple_repeat 1 416 0 8 1355 681 134 33 8 chr12 100944813 100944933 -20312597 - ORR1C2 LTR MaLR 0 384 262 8 1355 681 304 67 8 chr12 100944936 100945204 -20312326 + MLT1A0 LTR MaLR 82 365 0 8 1355 354 254 56 24 chr12 100945575 100945700 -20311830 + MLT1A1 LTR MaLR 1 129 -279 8 1355 351 301 18 0 chr12 100945802 100945915 -20311615 + MLT1A1 LTR MaLR 292 406 -2 8 1355 2071 278 100 32 chr12 100946281 100947158 -20310372 - Lx8 LINE L1 0 7473 6507 8 1355 21 0 0 0 chr12 100947210 100947231 -20310299 + AT_rich Low_complexity Low_complexity 1 21 0 8 1355 1224 296 140 27 chr12 100947231 100947789 -20309741 - Lx8 LINE L1 -2 7471 6851 8 1355 358 324 43 38 chr12 100947931 100948117 -20309413 + L1M5 LINE L1 3073 3259 -2887 8 1355 704 292 52 18 chr12 100948270 100948542 -20308988 + B4A SINE B4 1 281 -11 8 1355 537 16 0 0 chr12 100948580 100948642 -20308888 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1355 407 223 273 55 chr12 100949190 100949318 -20308212 - RSINE1 SINE B4 -5 160 5 8 1355 387 293 24 24 chr12 100949475 100949643 -20307887 - L1MC3 LINE L1 -17 7768 7601 8 1355 368 223 10 0 chr12 100949691 100949794 -20307736 + GA-rich Low_complexity Low_complexity 2 105 0 8 1355 360 246 111 14 chr12 100949859 100950003 -20307527 - L1MC3 LINE L1 -228 7557 7400 8 1355 740 231 78 74 chr12 100949990 100950233 -20307297 - L1MC3 LINE L1 -2016 5769 5526 8 1355 295 175 25 12 chr12 100950596 100950677 -20306853 + GA-rich Low_complexity Low_complexity 4 85 0 8 1355 965 274 6 100 chr12 100951342 100951662 -20305868 - B4A SINE B4 -2 290 1 8 1355 23 0 0 0 chr12 100952273 100952296 -20305234 + AT_rich Low_complexity Low_complexity 1 23 0 8 1355 380 250 42 59 chr12 100952371 100952490 -20305040 - PB1D10 SINE Alu 0 117 1 8 1355 291 275 130 24 chr12 100952515 100952638 -20304892 - B1_Mur1 SINE Alu -11 138 3 8 1355 911 221 106 40 chr12 100952700 100952974 -20304556 - B4 SINE B4 0 292 1 8 1355 242 279 67 7 chr12 100954259 100954378 -20303152 - MLT1K LTR MaLR -5 590 434 8 1355 622 107 59 6 chr12 100955412 100955581 -20301949 + (TA)n Simple_repeat Simple_repeat 1 178 0 8 1355 273 205 34 17 chr12 100955608 100955727 -20301803 + (TA)n Simple_repeat Simple_repeat 1 121 0 8 1355 320 240 90 0 chr12 100955981 100956081 -20301449 - L1MC3 LINE L1 0 7785 7677 8 1355 1064 43 0 0 chr12 100957411 100957550 -20299980 - B1_Mus2 SINE Alu 0 147 9 8 1355 1066 239 9 0 chr12 100957726 100957944 -20299586 + ID_B1 SINE B4 1 220 -4 8 1355 276 250 0 0 chr12 100958317 100958397 -20299133 + (CGG)n Simple_repeat Simple_repeat 3 82 0 8 1355 189 171 0 0 chr12 100958753 100958788 -20298742 + GA-rich Low_complexity Low_complexity 2 36 0 9 1355 293 197 49 0 chr12 100960225 100960286 -20297244 - RMER30 DNA MER1_type -37 165 102 9 1355 282 56 0 0 chr12 100960329 100960365 -20297165 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1355 313 0 41 41 chr12 100961056 100961105 -20296425 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 9 1355 946 32 0 8 chr12 100961105 100961232 -20296298 - B1_Mm SINE Alu 0 147 22 9 1355 228 231 30 15 chr12 100961530 100961596 -20295934 - B4 SINE B4 -2 290 224 9 1355 227 207 69 0 chr12 100961704 100961762 -20295768 + LTR85a LTR Gypsy? 507 568 -134 9 1355 662 252 61 61 chr12 100961767 100961909 -20295621 - B4 SINE B4 -64 228 92 9 1355 279 0 0 0 chr12 100961909 100961940 -20295590 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 9 1355 662 252 61 61 chr12 100961940 100962025 -20295505 - B4 SINE B4 -201 91 2 9 1355 231 275 281 14 chr12 100962512 100962733 -20294797 + B4A SINE B4 2 281 -11 9 1355 423 56 0 0 chr12 100962756 100962810 -20294720 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1355 444 262 30 60 chr12 100962915 100963114 -20294416 - MER20 DNA MER1_type 0 219 27 9 1355 331 283 49 45 chr12 100963235 100963295 -20294235 + B4 SINE B4 3 134 -158 9 1355 274 168 117 90 chr12 100963295 100963406 -20294124 + B1_Mur4 SINE Alu 28 141 -9 9 1355 331 283 49 45 chr12 100963406 100963474 -20294056 + B4 SINE B4 135 290 -2 9 1355 190 179 18 18 chr12 100963495 100963552 -20293978 + (CATA)n Simple_repeat Simple_repeat 2 58 0 9 1355 299 155 0 45 chr12 100964535 100964623 -20292907 + GA-rich Low_complexity Low_complexity 3 86 0 9 1355 262 228 0 17 chr12 100964839 100964897 -20292633 + LTR16E2 LTR ERVL 512 568 0 9 1355 36305 64 5 3 chr12 100965313 100970908 -20286622 - L1Md_F2 LINE L1 -3 6579 976 9 1355 445 314 131 62 chr12 100970988 100971501 -20286029 - MER44B DNA MER2_type 0 550 3 9 1355 861 272 0 27 chr12 100971663 100971886 -20285644 - ID_B1 SINE B4 0 224 8 9 1355 535 246 162 51 chr12 100971949 100971974 -20285556 - B4A SINE B4 -11 281 259 9 1355 478 0 32 0 chr12 100971974 100972036 -20285494 + (GA)n Simple_repeat Simple_repeat 2 65 0 9 1355 535 246 162 51 chr12 100972036 100972263 -20285267 - B4A SINE B4 -34 258 1 9 1355 189 132 0 0 chr12 100974023 100974061 -20283469 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1355 191 170 21 0 chr12 100974544 100974591 -20282939 + (CCCCAG)n Simple_repeat Simple_repeat 1 48 0 9 1355 261 266 0 25 chr12 100975177 100975258 -20282272 - PB1D10 SINE Alu -21 96 18 9 1355 686 208 112 30 chr12 100976455 100976688 -20280842 - MTEa LTR MaLR -10 369 118 9 1355 3416 25 5 2 chr12 100976935 100977330 -20280200 - MTA_Mm LTR MaLR 0 396 1 9 1355 266 284 14 0 chr12 100977836 100977910 -20279620 + MLT1D LTR MaLR 431 505 0 9 1355 186 347 101 8 chr12 100977962 100978081 -20279449 + MIR SINE MIR 18 147 -61 9 1355 443 310 42 27 chr12 100978237 100978569 -20278961 + L1M5 LINE L1 4367 4703 -1443 9 1355 548 275 0 16 chr12 100979123 100979245 -20278285 + RSINE1 SINE B4 45 164 -1 9 1355 1626 31 21 0 chr12 100979366 100979557 -20277973 + B2_Mm2 SINE B2 1 195 0 9 1355 384 268 166 42 chr12 100979647 100979825 -20277705 + Lx9 LINE L1 6155 6347 -1297 9 1355 351 0 0 0 chr12 100979825 100979864 -20277666 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1355 1845 293 137 30 chr12 100979864 100980619 -20276911 + Lx9 LINE L1 6348 7191 -453 9 1355 291 349 49 25 chr12 100980749 100980952 -20276578 + L1M5 LINE L1 5311 5518 -606 9 1355 971 56 2 1 chr12 100982398 100982545 -20274985 + B1_Mus2 SINE Alu 3 150 0 9 1355 326 68 26 39 chr12 100982547 100982624 -20274906 + (CAAAAA)n Simple_repeat Simple_repeat 2 77 0 9 1355 603 255 128 28 chr12 100983271 100983521 -20274009 + B4A SINE B4 1 275 -17 9 1355 987 117 0 20 chr12 100983698 100983846 -20273684 - B1_Mus2 SINE Alu -1 146 2 9 1355 231 336 72 9 chr12 100984004 100984115 -20273415 - B1F1 SINE Alu -11 138 21 9 1355 236 331 30 8 chr12 100984997 100985128 -20272402 + L1MC LINE L1 2866 2999 -3147 9 1355 230 229 0 0 chr12 100985364 100985434 -20272096 + (CCTG)n Simple_repeat Simple_repeat 3 72 0 9 1355 258 269 12 60 chr12 100985517 100985600 -20271930 + MTEa LTR MaLR 289 367 -12 9 1355 240 303 88 22 chr12 100985619 100985845 -20271685 + L1M5 LINE L1 3001 3241 -2905 9 1355 595 229 29 0 chr12 100985896 100986036 -20271494 + ID_B1 SINE B4 2 145 -79 9 1355 617 177 13 60 chr12 100986074 100986224 -20271306 + B1_Mur3 SINE Alu 5 147 -2 9 1355 194 160 20 0 chr12 100986224 100986274 -20271256 + (CAA)n Simple_repeat Simple_repeat 1 51 0 9 1355 751 262 24 15 chr12 100986296 100986501 -20271029 + B3 SINE B2 5 211 -5 9 1355 690 276 129 7 chr12 100986759 100987058 -20270472 - MTD LTR MaLR -6 353 18 9 1355 254 190 0 33 chr12 100988495 100988555 -20268975 + CT-rich Low_complexity Low_complexity 4 61 0 9 1355 931 255 200 14 chr12 100988560 100988930 -20268600 - Lx8 LINE L1 -356 7117 6679 9 1355 235 287 31 41 chr12 100988997 100989095 -20268435 + MLT1A1 LTR MaLR 312 408 0 9 1355 234 0 0 0 chr12 100989127 100989153 -20268377 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1355 532 286 113 21 chr12 100989167 100989353 -20268177 + ID_B1 SINE B4 2 204 -20 9 1355 914 291 127 11 chr12 100989986 100990451 -20267079 - Charlie10 DNA MER1_type -353 2469 1951 9 1355 341 194 200 19 chr12 100990635 100990740 -20266790 + RSINE1 SINE B4 1 124 -41 9 1355 198 0 0 0 chr12 100990740 100990762 -20266768 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 1355 225 0 0 0 chr12 100990872 100990897 -20266633 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 9 1355 342 300 13 20 chr12 100990963 100991116 -20266414 - Lx8 LINE L1 -6302 1306 1155 9 1355 666 309 41 9 chr12 100991144 100991464 -20266066 - Charlie10 DNA MER1_type -1144 1678 1349 9 1355 1238 329 110 42 chr12 100991618 100992674 -20264856 - Charlie10 DNA MER1_type -1694 1128 1 9 1355 201 261 58 0 chr12 100993223 100993292 -20264238 - L2 LINE L2 -1034 2385 2313 9 1355 245 109 22 0 chr12 100993466 100993512 -20264018 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1355 207 0 0 0 chr12 100993663 100993686 -20263844 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1355 182 37 0 36 chr12 100993689 100993717 -20263813 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1355 482 197 82 68 chr12 100993790 100993937 -20263593 - B1F SINE Alu 0 149 1 9 1355 432 287 107 22 chr12 100994001 100994320 -20263210 - MTE2a LTR MaLR -9 370 16 9 1355 249 283 28 9 chr12 100996247 100996354 -20261176 - L2 LINE L2 -1903 1516 1408 9 1355 277 424 38 24 chr12 100996725 100996935 -20260595 + MER115 DNA Tip100 39 251 -442 9 1355 205 211 0 0 chr12 100996998 100997036 -20260494 + (TAA)n Simple_repeat Simple_repeat 1 38 0 9 1355 12073 37 0 0 chr12 100997100 100998521 -20259009 + L1Md_F2 LINE L1 4166 5586 -297 9 1355 8473 36 2 1 chr12 100998521 100999516 -20258014 + L1Md_F2 LINE L1 5587 6582 0 9 1355 521 224 230 0 chr12 100999543 100999704 -20257826 - B3A SINE B2 0 198 1 9 1355 639 180 116 8 chr12 100999727 100999856 -20257674 - B1_Mur1 SINE Alu -2 147 5 9 1355 351 0 0 0 chr12 100999865 100999904 -20257626 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1355 270 160 25 62 chr12 101000801 101000881 -20256649 + Lx8 LINE L1 7373 7449 -24 1 1355 253 293 13 0 chr12 101001960 101002035 -20255495 - B4 SINE B4 -214 78 3 2 1355 230 185 12 0 chr12 101002141 101002222 -20255308 + CT-rich Low_complexity Low_complexity 2 83 0 3 1355 186 43 0 0 chr12 101002329 101002352 -20255178 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 4 1355 214 376 9 0 chr12 101002645 101002754 -20254776 + L2 LINE L2 2289 2398 -1021 5 1355 685 265 16 5 chr12 101003485 101003675 -20253855 - B3A SINE B2 -6 192 1 6 1355 536 321 123 26 chr12 101003780 101004196 -20253334 - Charlie1a DNA MER1_type 0 1455 1000 7 1355 309 276 0 11 chr12 101004218 101004306 -20253224 + B4A SINE B4 2 88 -204 8 1355 2726 80 11 6 chr12 101004297 101004715 -20252815 + BGLII LTR ERVK 5 421 0 9 1355 281 333 0 18 chr12 101004778 101004891 -20252639 + B4A SINE B4 182 292 0 8 1355 206 324 14 0 chr12 101004909 101004983 -20252547 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1355 1174 68 0 0 chr12 101005043 101005190 -20252340 + B1_Mus2 SINE Alu 1 147 0 1 1355 1890 290 135 18 chr12 101005208 101006030 -20251500 - Charlie1a DNA MER1_type -498 957 40 7 1355 640 311 18 18 chr12 101007332 101007561 -20249969 + MIRb SINE MIR 40 268 0 1 1355 582 185 68 15 chr12 101007692 101007824 -20249706 + B1_Mur1 SINE Alu 11 149 0 1 1355 868 240 25 5 chr12 101007886 101008083 -20249447 + B4 SINE B4 84 284 -8 1 1355 943 54 15 0 chr12 101008425 101008555 -20248975 + (TCCA)n Simple_repeat Simple_repeat 1 132 0 1 1355 252 199 43 22 chr12 101008893 101009081 -20248449 + (TA)n Simple_repeat Simple_repeat 1 192 0 1 1355 206 321 92 51 chr12 101009502 101009698 -20247832 + MIRc SINE MIR 33 239 -29 1 1355 626 276 131 11 chr12 101010286 101010546 -20246984 + B4A SINE B4 2 292 0 1 1355 484 279 31 8 chr12 101011070 101011200 -20246330 + ID_B1 SINE B4 84 216 -8 1 1355 2006 66 45 16 chr12 101011421 101011731 -20245799 + ORR1A2 LTR MaLR 1 319 -8 2 1355 1049 219 117 4 chr12 101012768 101013016 -20244514 + B4 SINE B4 1 276 -16 2 1355 775 211 69 13 chr12 101013293 101013524 -20244006 - RCHARR1 DNA MER1_type 0 974 731 2 1355 823 216 26 26 chr12 101013526 101013721 -20243809 + B3 SINE B2 1 195 -21 2 1355 2807 218 48 22 chr12 101013755 101014450 -20243080 - RCHARR1 DNA MER1_type -234 740 28 2 1355 198 0 0 0 chr12 101014807 101014829 -20242701 + (CAG)n Simple_repeat Simple_repeat 2 23 0 2 1355 180 0 0 0 chr12 101014871 101014891 -20242639 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1355 188 305 36 12 chr12 101015622 101015705 -20241825 + MER5A DNA MER1_type 77 161 -28 2 1355 4476 85 10 16 chr12 101017136 101017755 -20239775 + Lx LINE L1 6038 6652 -2 2 1355 188 289 0 50 chr12 101017792 101017872 -20239658 - MIRb SINE MIR -1 267 192 2 1355 222 283 0 19 chr12 101017921 101017975 -20239555 - B1F SINE Alu -96 53 1 2 1355 218 150 0 62 chr12 101020519 101020583 -20236947 + T-rich Low_complexity Low_complexity 5 64 0 3 1355 450 271 199 37 chr12 101020725 101021047 -20236483 + MLT1F LTR MaLR 167 540 -8 3 1355 25 31 0 0 chr12 101021446 101021478 -20236052 + AT_rich Low_complexity Low_complexity 1 32 0 3 1355 200 309 143 0 chr12 101024356 101024482 -20233048 - L2c LINE L2 -16 3371 3228 3 1355 947 148 0 0 chr12 101024703 101024845 -20232685 + B1_Mus1 SINE Alu 1 142 -6 3 1355 430 232 45 0 chr12 101025016 101025128 -20232402 + PB1D10 SINE Alu 1 117 0 3 1355 323 272 106 10 chr12 101026157 101026261 -20231269 - PB1 SINE Alu -3 124 11 3 1355 229 309 10 41 chr12 101026176 101026274 -20231256 - ID_B1 SINE B4 -49 175 81 3 1355 244 203 77 15 chr12 101028073 101028138 -20229392 - PB1D9 SINE Alu -4 116 48 3 1355 2088 146 22 3 chr12 101029693 101030050 -20227480 + ORR1B2 LTR MaLR 1 364 -3 3 1355 336 245 88 0 chr12 101030509 101030611 -20226919 - HERVL40-int LTR ERVL -5403 127 17 4 1355 30 27 0 0 chr12 101031135 101031172 -20226358 + AT_rich Low_complexity Low_complexity 1 37 0 4 1355 741 269 44 30 chr12 101031345 101031548 -20225982 - B3 SINE B2 -9 207 2 4 1355 201 147 0 0 chr12 101032678 101032712 -20224818 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1355 642 263 66 14 chr12 101032747 101032959 -20224571 + MLT1B LTR MaLR 150 372 -18 4 1355 366 286 73 22 chr12 101033322 101033458 -20224072 - B4A SINE B4 -148 144 2 4 1355 285 305 140 0 chr12 101035616 101035780 -20221750 + MLT1A0 LTR MaLR 179 365 0 4 1355 240 349 92 23 chr12 101036965 101037138 -20220392 + Charlie2b DNA MER1_type 123 307 -2475 4 1355 1261 154 29 5 chr12 101037318 101037527 -20220003 - B3 SINE B2 0 216 3 4 1355 1087 194 71 40 chr12 101037544 101037804 -20219726 - Lx7 LINE L1 0 7696 7431 4 1355 207 114 0 0 chr12 101037804 101037839 -20219691 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1355 1087 194 71 40 chr12 101037839 101037901 -20219629 - Lx7 LINE L1 -266 7430 7364 4 1355 225 0 0 0 chr12 101037903 101037928 -20219602 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1355 243 299 31 0 chr12 101037982 101038079 -20219451 + Charlie2b DNA MER1_type 508 607 -2175 4 1355 559 341 32 52 chr12 101038164 101038473 -20219057 + Charlie2b DNA MER1_type 718 1020 -1762 4 1355 453 237 36 15 chr12 101038575 101038712 -20218818 + B4A SINE B4 150 289 -3 5 1355 265 176 26 26 chr12 101038712 101038788 -20218742 + (CACTA)n Simple_repeat Simple_repeat 4 79 0 5 1355 273 57 0 0 chr12 101038802 101038837 -20218693 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 5 1355 252 293 81 55 chr12 101039141 101039412 -20218118 + L1M5 LINE L1 4011 4288 -1858 5 1355 474 286 120 73 chr12 101039430 101039747 -20217783 + MLT1A0 LTR MaLR 33 364 -1 5 1355 450 314 6 37 chr12 101040152 101040314 -20217216 - MLT2D LTR ERVL -248 166 10 5 1355 314 226 0 0 chr12 101040778 101040862 -20216668 + (CACAA)n Simple_repeat Simple_repeat 3 86 0 5 1355 323 298 109 48 chr12 101041284 101041513 -20216017 + Charlie2b DNA MER1_type 2487 2729 -53 4 1355 248 267 0 39 chr12 101042131 101042209 -20215321 - B3A SINE B2 -123 75 1 5 1355 368 241 4 11 chr12 101042301 101042408 -20215122 - PB1D10 SINE Alu -34 115 8 6 1355 1155 209 12 169 chr12 101043894 101043986 -20213544 - MT2B LTR ERVL -5 596 541 6 1355 246 81 0 0 chr12 101043986 101044023 -20213507 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1355 1155 215 44 153 chr12 101044023 101044412 -20213118 - MT2B LTR ERVL -61 540 1 6 1355 1643 26 16 0 chr12 101045209 101045398 -20212132 + B2_Mm1a SINE B2 2 193 0 6 1355 274 317 172 12 chr12 101046413 101046576 -20210954 + MLT1A0 LTR MaLR 6 194 -171 6 1355 832 233 77 14 chr12 101046696 101046905 -20210625 - ID_B1 SINE B4 -1 223 2 6 1355 261 331 57 0 chr12 101047305 101047429 -20210101 + MIR SINE MIR 2 132 -130 6 1355 1224 41 0 20 chr12 101047457 101047607 -20209923 - B1_Mus2 SINE Alu 0 147 1 6 1355 670 176 27 38 chr12 101047698 101047881 -20209649 + Lx7 LINE L1 7516 7696 0 6 1355 658 272 83 40 chr12 101047937 101047963 -20209567 + MER68 LTR ERVL 53 76 -487 6 1355 2429 90 16 0 chr12 101047963 101048285 -20209245 + ORR1A2 LTR MaLR 1 327 0 7 1355 658 277 125 24 chr12 101048285 101048655 -20208875 + MER68 LTR ERVL 77 527 -36 6 1355 241 182 0 0 chr12 101049993 101050037 -20207493 + B1_Mus1 SINE Alu 11 54 -94 7 1355 390 147 0 0 chr12 101050094 101050162 -20207368 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1355 210 171 0 0 chr12 101050446 101050487 -20207043 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1355 206 116 23 0 chr12 101050538 101050581 -20206949 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 1355 36 40 0 0 chr12 101050634 101050684 -20206846 + AT_rich Low_complexity Low_complexity 1 50 0 7 1355 411 311 33 0 chr12 101050794 101050916 -20206614 - RSINE1 SINE B4 -13 152 27 7 1355 329 260 37 42 chr12 101050991 101051117 -20206413 + L1M5 LINE L1 4079 4206 -1940 7 1355 1287 160 14 0 chr12 101051117 101051330 -20206200 + B3 SINE B2 1 216 0 7 1355 329 263 92 69 chr12 101051330 101051549 -20205981 + L1M5 LINE L1 4207 4434 -1712 7 1355 308 281 11 11 chr12 101051611 101051701 -20205829 + MIRb SINE MIR 54 143 -125 7 1355 304 333 119 17 chr12 101052047 101052224 -20205306 + L1M5 LINE L1 4627 4821 -1325 7 1355 3232 132 49 9 chr12 101052556 101053091 -20204439 + Lx4B LINE L1 6501 7056 -2 8 1355 26 0 0 0 chr12 101053119 101053145 -20204385 + AT_rich Low_complexity Low_complexity 1 26 0 8 1355 1135 224 131 18 chr12 101054622 101054958 -20202572 + MTD LTR MaLR 3 376 -43 8 1355 214 301 74 74 chr12 101056158 101056280 -20201250 + ID_B1 SINE B4 81 202 -22 8 169 2160 117 0 22 chr12 101056296 101056612 -20200918 + RLTR27 LTR ERVK 1 309 0 8 1356 23 33 0 0 chr12 101058234 101058264 -20199266 + AT_rich Low_complexity Low_complexity 1 30 0 8 1356 503 261 93 52 chr12 101059023 101059099 -20198431 - B4A SINE B4 -1 291 225 8 1356 279 0 0 0 chr12 101059099 101059130 -20198400 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 1356 503 249 63 28 chr12 101059130 101059286 -20198244 - B4A SINE B4 -68 224 2 8 1356 311 307 77 15 chr12 101059619 101059814 -20197716 + L2a LINE L2 2968 3174 -252 8 1356 446 215 28 160 chr12 101061312 101061456 -20196074 + RMER20B LTR ERVK 3 127 -500 8 1356 257 192 0 0 chr12 101061903 101061955 -20195575 - Lx8 LINE L1 -2 7471 7420 9 1356 1790 183 50 33 chr12 101061956 101062317 -20195213 + ORR1B2 LTR MaLR 1 367 0 9 1356 1327 79 10 59 chr12 101062323 101062525 -20195005 + B2_Mm1t SINE B2 1 192 -1 9 1356 6487 161 91 24 chr12 101062527 101063680 -20193850 + ORR1B2-int LTR MaLR 1 1221 -288 9 1356 537 58 0 0 chr12 101063680 101063749 -20193781 + (TC)n Simple_repeat Simple_repeat 2 70 0 9 1356 6487 161 91 24 chr12 101063749 101064005 -20193525 + ORR1B2-int LTR MaLR 1222 1504 -5 9 1356 1925 177 13 32 chr12 101064010 101064384 -20193146 + ORR1B2 LTR MaLR 1 367 0 9 1356 266 277 0 87 chr12 101064446 101064549 -20192981 + MIRb SINE MIR 114 207 -61 9 1356 180 135 0 0 chr12 101065263 101065300 -20192230 + (TTA)n Simple_repeat Simple_repeat 2 38 0 9 1356 496 286 68 64 chr12 101065339 101065619 -20191911 - B4A SINE B4 -10 282 2 9 1356 2405 90 12 0 chr12 101065708 101066029 -20191501 - ORR1A2 LTR MaLR -2 325 1 9 1356 2054 261 94 9 chr12 101066035 101066703 -20190827 + Tigger1 DNA MER2_type 778 1502 -916 9 1356 536 181 0 0 chr12 101066703 101066797 -20190733 + L1_Mur2 LINE L1 4137 4230 -1647 9 1356 2087 264 106 46 chr12 101066891 101067756 -20189774 + Tigger1 DNA MER2_type 1498 2414 -4 9 1356 453 338 66 0 chr12 101068533 101068746 -20188784 + MIR SINE MIR 32 258 -4 1 1356 280 219 0 52 chr12 101069004 101069081 -20188449 - MIR SINE MIR -114 148 76 1 1356 288 0 0 0 chr12 101069841 101069873 -20187657 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1356 436 155 38 65 chr12 101070982 101071086 -20186444 + PB1D9 SINE Alu 2 105 -15 1 1356 504 0 0 0 chr12 101071086 101071142 -20186388 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1356 436 141 37 75 chr12 101071142 101071157 -20186373 + PB1D9 SINE Alu 106 119 -1 1 1356 222 37 0 0 chr12 101071569 101071596 -20185934 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1356 762 239 34 39 chr12 101071763 101071968 -20185562 + B3 SINE B2 3 206 -10 1 1356 631 302 25 0 chr12 101072013 101072175 -20185355 + Lx8 LINE L1 7124 7289 -184 1 1356 198 103 0 0 chr12 101072213 101072242 -20185288 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 1 1356 3514 87 26 4 chr12 101073081 101073577 -20183953 - L1_Mus3 LINE L1 -1 6637 6131 1 1356 294 265 171 0 chr12 101073830 101073947 -20183583 + B1F SINE Alu 3 139 -10 1 1356 1213 35 0 7 chr12 101074156 101074299 -20183231 + B1_Mus1 SINE Alu 1 142 -6 1 1356 522 0 0 0 chr12 101074301 101074359 -20183171 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 1 1356 296 197 30 0 chr12 101075866 101075932 -20181598 - ID4_ SINE ID -13 70 3 1 1356 410 0 20 0 chr12 101077026 101077076 -20180454 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1356 234 0 0 0 chr12 101077076 101077101 -20180429 + (CG)n Simple_repeat Simple_repeat 2 27 0 1 1356 24 77 0 0 chr12 101077222 101077274 -20180256 + AT_rich Low_complexity Low_complexity 1 52 0 1 1356 769 280 28 17 chr12 101077953 101078240 -20179290 + B4A SINE B4 1 290 -2 1 1356 266 206 25 25 chr12 101078260 101078546 -20178984 + (CA)n Simple_repeat Simple_repeat 1 286 0 1 1356 510 204 0 30 chr12 101078562 101078825 -20178705 + (CA)n Simple_repeat Simple_repeat 1 254 0 1 1356 36 40 0 0 chr12 101079267 101079317 -20178213 + AT_rich Low_complexity Low_complexity 1 50 0 1 1356 1119 266 86 65 chr12 101079407 101080035 -20177495 - L1MA9 LINE L1 -14 6298 5658 1 1356 942 242 68 65 chr12 101080025 101080410 -20177120 - Lx9 LINE L1 -5 7639 7254 1 1356 2006 82 39 0 chr12 101080914 101081219 -20176311 - ORR1A2 LTR MaLR -8 319 3 1 1356 261 0 0 0 chr12 101082777 101082806 -20174724 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1356 244 389 48 0 chr12 101083182 101083308 -20174222 + MIR SINE MIR 13 144 -118 1 1356 352 311 0 28 chr12 101084108 101084214 -20173316 + B1F SINE Alu 47 149 0 1 1356 387 157 0 0 chr12 101085767 101085837 -20171693 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1356 319 130 26 0 chr12 101087799 101087876 -20169654 + CT-rich Low_complexity Low_complexity 1 79 0 1 1356 456 294 22 22 chr12 101087880 101088019 -20169511 - ID_B1 SINE B4 0 224 86 1 1356 268 310 0 0 chr12 101088232 101088332 -20169198 + (CAGGC)n Simple_repeat Simple_repeat 3 102 0 1 1356 381 228 48 63 chr12 101088377 101088511 -20169019 + B3A SINE B2 82 216 0 1 1356 345 229 226 14 chr12 101089535 101089681 -20167849 - B3 SINE B2 -38 178 2 1 1356 336 275 223 56 chr12 101089745 101090204 -20167326 - Charlie7 DNA MER1_type -3 2609 2073 1 1356 378 0 0 0 chr12 101090334 101090376 -20167154 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1356 1045 37 0 0 chr12 101090378 101090514 -20167016 - B1_Mus1 SINE Alu -6 142 7 1 1356 559 176 6 96 chr12 101090514 101090535 -20166995 - ID_B1 SINE B4 -6 218 76 1 1356 659 228 119 63 chr12 101090535 101090820 -20166710 - Lx8 LINE L1 -25 7448 7148 1 1356 357 290 15 61 chr12 101091072 101091204 -20166326 + PB1 SINE Alu 1 126 -1 1 1356 296 288 25 0 chr12 101091212 101091292 -20166238 + ID4 SINE ID 2 83 0 1 1356 368 236 71 97 chr12 101091504 101091659 -20165871 - Charlie7 DNA MER1_type -1119 1493 1343 1 1356 324 315 236 21 chr12 101091763 101092152 -20165378 + MLT1J LTR MaLR 5 477 -35 1 1356 181 338 101 46 chr12 101095071 101095483 -20162047 - L2b LINE L2 -215 3160 2728 1 1356 734 299 77 28 chr12 101095825 101096111 -20161419 - MER2 DNA MER2_type -4 341 42 1 1356 4372 219 81 40 chr12 101096911 101098606 -20158924 + Lx5 LINE L1 5482 7417 -43 1 1356 2923 41 3 0 chr12 101101685 101102030 -20155500 + ORR1A1 LTR MaLR 1 346 0 1 1356 31 0 0 0 chr12 101102860 101102891 -20154639 + AT_rich Low_complexity Low_complexity 1 31 0 1 1356 279 286 134 41 chr12 101103604 101103812 -20153718 + MIRb SINE MIR 17 260 -8 1 1356 619 267 0 20 chr12 101104555 101104704 -20152826 + ID_B1 SINE B4 78 223 -1 1 1356 180 0 0 0 chr12 101104711 101104731 -20152799 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1356 436 200 42 0 chr12 101104864 101104959 -20152571 + B3A SINE B2 1 99 -99 1 1356 580 118 145 22 chr12 101106219 101106357 -20151173 + Lx3_Mus LINE L1 6855 7009 0 1 1356 459 258 172 63 chr12 101106890 101107064 -20150466 + B3A SINE B2 2 194 -4 1 1356 283 221 91 0 chr12 101107125 101107202 -20150328 + B3A SINE B2 10 93 -105 1 1356 690 185 79 50 chr12 101107205 101107717 -20149813 + RMER17C LTR ERVK 2 410 0 1 1356 498 252 8 0 chr12 101107717 101107836 -20149694 + B3 SINE B2 89 208 -8 1 1356 268 299 13 0 chr12 101107948 101108025 -20149505 + ID4_ SINE ID 5 82 -1 1 1356 632 276 110 0 chr12 101108397 101108661 -20148869 - L1M5 LINE L1 -2577 3569 3277 1 1356 4600 129 55 5 chr12 101108728 101109492 -20148038 - L1_Mur2 LINE L1 -1269 4608 3807 1 1356 378 244 112 23 chr12 101109496 101109678 -20147852 - L1M5 LINE L1 -3100 3040 2839 1 1356 681 47 0 0 chr12 101109975 101110060 -20147470 + (TTTCC)n Simple_repeat Simple_repeat 2 86 0 1 1356 1081 76 0 0 chr12 101110062 101110194 -20147336 - B1_Mus1 SINE Alu -14 134 3 1 1356 254 197 63 81 chr12 101110459 101110569 -20146961 + L1MC4a LINE L1 7770 7863 -19 1 1356 359 89 18 0 chr12 101110659 101110715 -20146815 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 1 1356 2189 41 34 0 chr12 101110835 101111104 -20146426 - L1_Mus3 LINE L1 -208 6430 6153 1 1356 756 81 16 8 chr12 101111102 101111261 -20146269 + L1_Mus3 LINE L1 6491 6638 0 1 1356 298 311 48 19 chr12 101111666 101111771 -20145759 + ID_B1 SINE B4 69 176 -48 1 1356 389 284 21 0 chr12 101111685 101111779 -20145751 + PB1D10 SINE Alu 8 103 -14 1 1356 1095 246 141 6 chr12 101111779 101112106 -20145424 + MTEb LTR MaLR 1 371 -8 1 1356 1217 226 80 55 chr12 101112286 101112651 -20144879 - MTE2a LTR MaLR 0 379 6 1 1356 828 317 52 72 chr12 101113174 101113578 -20143952 - MTD LTR MaLR -14 405 10 1 1356 2336 115 12 0 chr12 101113745 101114068 -20143462 - ORR1A2 LTR MaLR 0 327 1 1 1356 850 277 147 2 chr12 101115588 101115751 -20141779 - L1_Mur3 LINE L1 -1310 4570 4375 1 1356 207 0 0 0 chr12 101115751 101115774 -20141756 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1356 850 277 147 2 chr12 101115774 101115923 -20141607 - L1_Mur3 LINE L1 -1506 4374 4206 1 1356 915 167 172 0 chr12 101115923 101116115 -20141415 - URR1B DNA MER1_type 0 225 1 1 1356 850 277 147 2 chr12 101116115 101116243 -20141287 - L1_Mur3 LINE L1 -1675 4205 4067 1 1356 590 191 13 132 chr12 101116310 101116461 -20141069 + MT2B LTR ERVL 1 133 -468 1 1356 378 222 54 36 chr12 101116978 101117090 -20140440 + PB1D7 SINE Alu 1 114 -6 1 1356 1134 60 0 0 chr12 101118314 101118448 -20139082 + B1_Mm SINE Alu 2 135 -12 1 1356 380 310 62 0 chr12 101118685 101118798 -20138732 + RSINE1 SINE B4 46 165 0 1 1356 651 257 77 20 chr12 101119651 101119846 -20137684 + Lx8 LINE L1 6973 7178 -295 1 1356 684 152 0 0 chr12 101119885 101120003 -20137527 + (CCTG)n Simple_repeat Simple_repeat 2 119 0 1 1356 232 375 45 0 chr12 101120103 101120191 -20137339 - PB1D10 SINE Alu -2 115 24 1 1356 227 235 39 0 chr12 101120911 101120962 -20136568 + GA-rich Low_complexity Low_complexity 3 55 0 1 1356 26 64 0 0 chr12 101122704 101122751 -20134779 + GC_rich Low_complexity Low_complexity 1 47 0 1 1356 180 241 125 12 chr12 101123069 101123149 -20134381 + MIR SINE MIR 166 254 -8 1 1356 399 325 58 53 chr12 101123854 101124062 -20133468 - B4A SINE B4 0 292 84 1 1356 331 217 0 0 chr12 101125386 101125446 -20132084 + U6 snRNA snRNA 47 106 -1 1 1356 284 227 0 40 chr12 101125689 101125790 -20131740 + T-rich Low_complexity Low_complexity 6 102 0 1 1356 31 0 0 0 chr12 101125862 101125893 -20131637 + AT_rich Low_complexity Low_complexity 1 31 0 1 1356 656 285 52 44 chr12 101126036 101126376 -20131154 - Lx8 LINE L1 -1711 5985 5634 1 1356 398 261 0 146 chr12 101126408 101126538 -20130992 - B4 SINE B4 -68 224 114 1 1356 484 275 41 59 chr12 101126534 101126614 -20130916 + B3A SINE B2 8 88 -110 1 1356 3802 28 5 9 chr12 101126614 101127052 -20130478 - RLTR10C LTR ERVK 0 436 1 1 1356 484 275 41 59 chr12 101127052 101127141 -20130389 + B3A SINE B2 89 174 -24 1 1356 449 248 120 0 chr12 101127166 101127291 -20130239 - B1F SINE Alu -8 141 2 1 1356 297 260 85 47 chr12 101127925 101128054 -20129476 - Tigger13a DNA MER2_type -48 723 590 1 1356 635 264 0 0 chr12 101128664 101128789 -20128741 + RSINE1 SINE B4 3 127 -38 1 1356 689 222 97 0 chr12 101128826 101128970 -20128560 + RSINE1 SINE B4 3 160 -5 1 1356 239 270 64 25 chr12 101129025 101129106 -20128424 + ID2 SINE ID 12 103 -49 1 1356 319 329 81 12 chr12 101130246 101130418 -20127112 + MER5A DNA MER1_type 1 184 -5 1 1356 268 333 163 6 chr12 101131119 101131297 -20126233 + MIRb SINE MIR 40 245 -23 1 1356 331 274 23 117 chr12 101133089 101133217 -20124313 - PB1D9 SINE Alu -3 117 2 1 1356 685 252 25 13 chr12 101133217 101133297 -20124233 - B4 SINE B4 -203 89 8 1 1356 430 327 129 48 chr12 101133908 101134242 -20123288 - MLT1J LTR MaLR -23 489 129 1 1356 669 321 29 85 chr12 101134507 101134882 -20122648 + MLT1B LTR MaLR 29 382 -8 1 1356 462 275 30 0 chr12 101135545 101135676 -20121854 + B1F SINE Alu 1 135 -14 1 1356 258 32 0 0 chr12 101135995 101136026 -20121504 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2 1356 648 231 44 13 chr12 101136041 101136199 -20121331 - RSINE1 SINE B4 0 165 3 2 1356 303 275 152 24 chr12 101136733 101136897 -20120633 - L3 LINE CR1 -202 4287 4103 2 1356 661 237 95 21 chr12 101137559 101137749 -20119781 + B4A SINE B4 3 206 -86 2 1356 410 256 0 0 chr12 101138041 101138123 -20119407 + ID4_ SINE ID 2 83 0 2 1356 1151 144 77 5 chr12 101138457 101138666 -20118864 - URR1B DNA MER1_type -1 224 1 2 1356 189 292 143 22 chr12 101139783 101139874 -20117656 - MIR SINE MIR -118 144 43 2 1356 450 0 0 0 chr12 101140404 101140454 -20117076 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 1356 220 234 84 153 chr12 101144725 101144856 -20112674 - PB1 SINE Alu -3 124 3 2 1356 513 269 21 114 chr12 101144856 101144939 -20112591 - B4A SINE B4 -227 65 1 2 1356 380 272 41 66 chr12 101145484 101145606 -20111924 - B1F SINE Alu 0 149 31 2 1356 426 227 93 62 chr12 101146162 101146340 -20111190 + B3 SINE B2 1 190 -5 2 1356 936 206 75 10 chr12 101146483 101146684 -20110846 + B3 SINE B2 3 216 0 2 1356 199 286 143 0 chr12 101147134 101147218 -20110312 + L3 LINE CR1 4172 4267 -222 2 1356 195 304 130 0 chr12 101148653 101148745 -20108785 + MIR SINE MIR 47 150 -112 2 1356 230 222 22 0 chr12 101148971 101149016 -20108514 + (CGTG)n Simple_repeat Simple_repeat 2 47 0 2 1356 189 0 0 0 chr12 101150591 101150612 -20106918 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1356 402 248 30 0 chr12 101151879 101151980 -20105550 + B1F SINE Alu 25 128 -21 2 1356 229 239 69 14 chr12 101152002 101152074 -20105456 + ID4_ SINE ID 4 79 -4 2 1356 261 0 0 0 chr12 101152533 101152562 -20104968 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2 1356 641 238 18 0 chr12 101154154 101154318 -20103212 - L1MB7 LINE L1 -4 6180 6014 2 1356 245 352 96 11 chr12 101154638 101154847 -20102683 + MIRb SINE MIR 8 226 -36 2 1356 477 0 0 0 chr12 101154855 101154908 -20102622 + (TGG)n Simple_repeat Simple_repeat 3 55 0 2 1356 248 217 0 0 chr12 101154925 101154971 -20102559 + B3 SINE B2 157 202 -14 2 1356 285 250 71 124 chr12 101155083 101155111 -20102419 - MT2B2 LTR ERVL -248 336 305 2 1356 364 297 9 35 chr12 101155111 101155226 -20102304 - PB1D10 SINE Alu -5 112 1 2 1356 285 250 71 124 chr12 101155226 101155240 -20102290 - MT2B2 LTR ERVL -280 304 288 2 1356 333 68 0 0 chr12 101155240 101155284 -20102246 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1356 285 250 71 124 chr12 101155284 101155409 -20102121 - MT2B2 LTR ERVL -297 287 178 2 1356 733 218 15 0 chr12 101155287 101155420 -20102110 - B1_Mur1 SINE Alu -13 136 2 2 1356 488 273 13 77 chr12 101155420 101155442 -20102088 - ID_B1 SINE B4 -13 211 67 2 1356 862 76 15 8 chr12 101155761 101155893 -20101637 + (GGAGA)n Simple_repeat Simple_repeat 5 137 0 2 1356 188 245 38 0 chr12 101156006 101156059 -20101471 - L2 LINE L2 -339 3080 3026 2 1356 204 339 165 0 chr12 101157241 101157350 -20100180 + L2b LINE L2 3220 3346 -29 2 1356 264 279 0 14 chr12 101157427 101157496 -20100034 + ID4 SINE ID 14 81 -2 2 1356 452 159 110 18 chr12 101157750 101157859 -20099671 + PB1D7 SINE Alu 1 119 -1 2 1356 284 308 0 0 chr12 101158011 101158076 -20099454 - L2a LINE L2 -18 3408 3344 2 1356 181 258 147 39 chr12 101158487 101158616 -20098914 - L2a LINE L2 -251 3175 3033 2 1356 477 262 161 14 chr12 101158805 101158948 -20098582 + B3A SINE B2 9 172 -26 2 1356 950 192 35 10 chr12 101159388 101159588 -20097942 - B3 SINE B2 -11 205 1 2 1356 548 306 19 31 chr12 101160617 101160779 -20096751 + B3A SINE B2 21 180 -18 2 1356 204 97 0 0 chr12 101160788 101160819 -20096711 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1356 647 158 92 0 chr12 101160932 101161052 -20096478 + B1_Mur3 SINE Alu 17 147 -2 2 1356 182 222 20 82 chr12 101162280 101162329 -20095201 - L2c LINE L2 -62 3325 3280 2 1356 515 240 0 19 chr12 101162552 101162658 -20094872 + PB1D10 SINE Alu 14 117 0 2 1356 197 268 35 18 chr12 101163521 101163578 -20093952 + L2b LINE L2 3317 3374 -1 2 1356 207 0 0 0 chr12 101164808 101164831 -20092699 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2 1356 624 211 46 15 chr12 101165274 101165404 -20092126 - RSINE1 SINE B4 -30 135 2 2 1356 255 61 0 0 chr12 101165436 101165469 -20092061 + (TTGG)n Simple_repeat Simple_repeat 1 33 0 2 1356 231 262 0 0 chr12 101165478 101165520 -20092010 - ID2 SINE ID -36 47 6 2 1356 545 224 26 0 chr12 101167206 101167322 -20090208 + PB1D9 SINE Alu 2 120 0 2 1356 558 265 45 57 chr12 101167359 101167535 -20089995 + MLT1D LTR MaLR 332 505 0 2 1356 261 229 0 0 chr12 101169438 101169486 -20088044 - MLT1A LTR MaLR -294 80 33 2 1356 629 288 178 60 chr12 101169516 101170079 -20087451 + MLT2F LTR ERVL 35 663 0 2 1356 444 351 75 19 chr12 101170529 101170796 -20086734 + Tigger10 DNA Tigger 1014 1295 -548 2 1356 349 221 57 19 chr12 101170896 101171002 -20086528 - PB1D10 SINE Alu -7 110 1 2 1356 877 252 14 23 chr12 101171338 101171557 -20085973 - Lx8 LINE L1 -1019 6454 6238 2 1356 598 239 227 57 chr12 101171744 101172008 -20085522 + MTEa LTR MaLR 5 313 -66 2 1356 450 196 270 35 chr12 101172496 101172670 -20084860 - B3 SINE B2 0 216 2 2 1356 1222 54 0 0 chr12 101172718 101172865 -20084665 + B1_Mus1 SINE Alu 2 148 0 2 1356 21 0 0 0 chr12 101175569 101175590 -20081940 + AT_rich Low_complexity Low_complexity 1 21 0 2 1356 1051 191 28 28 chr12 101177044 101177260 -20080270 - B3 SINE B2 0 216 1 2 1356 492 32 0 0 chr12 101177732 101177794 -20079736 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1356 189 0 0 0 chr12 101177794 101177814 -20079716 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1356 1210 154 27 5 chr12 101178475 101178696 -20078834 + URR1A DNA MER1_type 1 226 0 2 1356 483 194 0 61 chr12 101179890 101179989 -20077541 + B1_Mur1 SINE Alu 57 149 0 2 1356 212 162 0 26 chr12 101181593 101181631 -20075899 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2 1356 377 268 0 0 chr12 101181734 101181816 -20075714 - ID4_ SINE ID 0 83 2 2 1356 454 277 176 0 chr12 101181973 101182121 -20075409 + MTC LTR MaLR 1 174 -247 2 1356 212 364 51 19 chr12 101182193 101182350 -20075180 + L2a LINE L2 3227 3388 -38 2 1356 489 17 0 0 chr12 101182827 101182885 -20074645 + (TGAA)n Simple_repeat Simple_repeat 1 58 0 2 1356 335 325 68 43 chr12 101183740 101184042 -20073488 - Charlie1b DNA MER1_type -48 475 153 2 1356 1023 148 143 0 chr12 101184227 101184409 -20073121 + URR1A DNA MER1_type 1 208 -18 2 1356 319 312 74 12 chr12 101185124 101185286 -20072244 + MIRb SINE MIR 96 267 -1 2 1356 936 150 7 20 chr12 101186378 101186528 -20071002 + B1_Mur3 SINE Alu 1 148 -1 2 1356 461 132 0 24 chr12 101186544 101186629 -20070901 + (ATG)n Simple_repeat Simple_repeat 1 83 0 2 1356 241 321 38 13 chr12 101186637 101186716 -20070814 - ID4_ SINE ID -1 82 2 2 1356 658 286 84 31 chr12 101186912 101187020 -20070510 - L1MA4A LINE L1 -396 5907 5794 2 1356 405 0 0 0 chr12 101187020 101187065 -20070465 + (CATA)n Simple_repeat Simple_repeat 1 45 0 2 1356 658 286 84 31 chr12 101187065 101187313 -20070217 - L1MA4A LINE L1 -510 5793 5533 2 1356 225 333 7 85 chr12 101187404 101187545 -20069985 - Lx8 LINE L1 -144 7329 7200 2 169 608 259 14 27 chr12 101187543 101187690 -20069840 - Lx9 LINE L1 -1159 6485 6341 2 1357 543 16 0 0 chr12 101187693 101187757 -20069773 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1357 309 319 120 53 chr12 101188303 101188528 -20069002 - L1MC4a LINE L1 -320 7562 7323 2 1357 527 172 189 0 chr12 101189174 101189296 -20068234 - B1F1 SINE Alu -2 147 3 2 1357 1493 58 16 5 chr12 101190501 101190692 -20066838 - B2_Mm2 SINE B2 0 195 3 2 1357 202 29 57 0 chr12 101191626 101191661 -20065869 + (CCCCCA)n Simple_repeat Simple_repeat 2 38 0 2 1357 586 323 50 42 chr12 101192162 101192421 -20065109 + B4A SINE B4 8 268 -24 2 1357 369 0 0 0 chr12 101192440 101192481 -20065049 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1357 365 198 117 19 chr12 101192752 101192855 -20064675 + B4A SINE B4 3 115 -177 2 1357 24 0 0 0 chr12 101193021 101193045 -20064485 + GC_rich Low_complexity Low_complexity 1 24 0 2 1357 273 193 0 0 chr12 101193517 101193574 -20063956 + B4A SINE B4 146 202 -90 2 1357 314 331 90 14 chr12 101194301 101194445 -20063085 - HAL1-3A_ME LINE L1 -420 2438 2284 2 1357 221 180 0 20 chr12 101194445 101194496 -20063034 + CT-rich Low_complexity Low_complexity 1 50 0 2 1357 324 289 130 9 chr12 101195313 101195428 -20062102 - B3A SINE B2 -65 133 5 2 1357 281 335 123 34 chr12 101196009 101196170 -20061360 - MIR SINE MIR -69 199 27 2 1357 334 284 87 46 chr12 101197421 101197639 -20059891 - MLT1K LTR MaLR -156 439 213 2 1357 286 287 170 60 chr12 101197919 101198119 -20059411 + MER112 DNA MER1_type 6 227 -34 2 1357 194 282 110 68 chr12 101198191 101198309 -20059221 + MIRb SINE MIR 34 156 -112 2 1357 1133 274 23 13 chr12 101199202 101199505 -20058025 + Lx8 LINE L1 6995 7300 -173 2 1357 246 174 0 0 chr12 101199535 101199581 -20057949 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1357 364 183 97 0 chr12 101199874 101199967 -20057563 + L1MD LINE L1 3842 3943 -2203 2 1357 761 112 103 0 chr12 101200089 101200205 -20057325 + B1_Mus1 SINE Alu 2 129 -19 2 1357 257 270 104 49 chr12 101200368 101200512 -20057018 + L1M4 LINE L1 4187 4338 -1808 2 1357 248 243 239 18 chr12 101200585 101200698 -20056832 + L1M4 LINE L1 4486 4623 -1523 2 1357 359 314 69 29 chr12 101200747 101200921 -20056609 + L1M4 LINE L1 4657 4837 -1309 2 1357 229 211 0 17 chr12 101201209 101201267 -20056263 + L1MC LINE L1 5223 5279 -867 2 1357 500 111 12 0 chr12 101201289 101201370 -20056160 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1357 659 284 64 30 chr12 101201378 101201581 -20055949 - B4A SINE B4 -82 210 1 3 1357 731 253 130 48 chr12 101201871 101202331 -20055199 + L1ME2z LINE L1 5928 6425 -19 3 1357 221 0 35 0 chr12 101208456 101208485 -20049045 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1357 348 43 0 0 chr12 101208485 101208530 -20049000 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 3 1357 237 65 0 0 chr12 101209325 101209356 -20048174 + (TCC)n Simple_repeat Simple_repeat 3 33 0 3 1357 3207 60 20 5 chr12 101209413 101209814 -20047716 - MTB_Mm LTR MaLR 0 407 1 3 1357 271 267 27 0 chr12 101210117 101210192 -20047338 + CT-rich Low_complexity Low_complexity 2 78 0 3 1357 342 277 84 8 chr12 101210216 101210347 -20047183 - B1F1 SINE Alu -8 141 1 3 1357 349 129 14 14 chr12 101210351 101210422 -20047108 + CT-rich Low_complexity Low_complexity 4 74 0 3 1357 198 0 0 0 chr12 101210425 101210447 -20047083 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1357 1262 41 0 0 chr12 101210449 101210595 -20046935 - B1_Mus2 SINE Alu -1 146 1 3 1357 713 206 14 35 chr12 101210605 101210746 -20046784 - B1F SINE Alu -7 142 5 3 1357 519 221 166 17 chr12 101211173 101211348 -20046182 - B3 SINE B2 -15 201 1 3 1357 273 308 50 0 chr12 101211506 101211626 -20045904 - L1M4 LINE L1 -696 5488 5363 3 1357 180 111 0 0 chr12 101211633 101211660 -20045870 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 3 1357 406 324 9 19 chr12 101211660 101211759 -20045771 - PB1D10 SINE Alu -10 107 9 3 1357 239 270 225 0 chr12 101211761 101211872 -20045658 - L1M4 LINE L1 -771 5375 5240 3 1357 326 180 0 0 chr12 101211888 101211949 -20045581 - L1M4 LINE L1 -964 5182 5122 3 1357 586 244 168 5 chr12 101211958 101212143 -20045387 - B3 SINE B2 -1 215 1 3 1357 1296 71 32 37 chr12 101212150 101212178 -20045352 - B2_Mm2 SINE B2 -5 190 163 3 1357 360 0 0 0 chr12 101212178 101212218 -20045312 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 1357 1296 71 32 37 chr12 101212218 101212379 -20045151 - B2_Mm2 SINE B2 -33 162 2 3 1357 1933 300 111 61 chr12 101212382 101213802 -20043728 - L1M4 LINE L1 -1012 5134 3645 3 1357 28 29 0 0 chr12 101213982 101214017 -20043513 + AT_rich Low_complexity Low_complexity 1 35 0 3 1357 180 284 48 24 chr12 101214039 101214122 -20043408 + L2 LINE L2 2470 2554 -865 3 1357 214 241 0 67 chr12 101214157 101214185 -20043345 + A-rich Low_complexity Low_complexity 5 29 0 3 1357 480 35 0 0 chr12 101214185 101214243 -20043287 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1357 214 241 0 67 chr12 101214243 101214271 -20043259 + A-rich Low_complexity Low_complexity 30 57 0 3 1357 3186 39 5 0 chr12 101214271 101214676 -20042854 + L1Md_F2 LINE L1 6199 6582 0 3 1357 1216 48 21 0 chr12 101214676 101214821 -20042709 + B1_Mus1 SINE Alu 1 148 0 3 1357 342 193 102 0 chr12 101214828 101214916 -20042614 - Lx7 LINE L1 -361 7335 7239 3 1357 327 167 143 0 chr12 101214918 101215002 -20042528 + ORR1B1-int LTR MaLR 173 268 -1241 3 1357 580 196 24 124 chr12 101214979 101215148 -20042382 + MT2B LTR ERVL 118 269 -332 3 1357 867 94 16 0 chr12 101215153 101215281 -20042249 - ORR1A4 LTR MaLR -188 141 12 3 1357 3816 263 61 67 chr12 101215281 101216725 -20040805 - Lx7 LINE L1 -466 7230 5908 3 1357 5546 84 8 66 chr12 101216725 101217577 -20039953 - RLTR13B4 LTR ERVK 0 803 1 3 1357 14244 205 71 134 chr12 101217577 101218179 -20039351 - Lx7 LINE L1 -1553 5907 5273 3 1357 3006 78 10 15 chr12 101218179 101218581 -20038949 - MTB LTR MaLR 0 400 1 3 1357 14244 209 63 114 chr12 101218581 101220982 -20036548 - Lx7 LINE L1 -608 5272 2838 3 1357 792 78 76 25 chr12 101220982 101221100 -20036430 + B1_Mur4 SINE Alu 27 150 0 3 1357 14244 209 63 114 chr12 101221100 101221679 -20035851 - Lx7 LINE L1 -3043 2837 2251 3 1357 2329 82 3 0 chr12 101221679 101221984 -20035546 + ORR1A2 LTR MaLR 22 327 0 3 1357 14244 209 63 114 chr12 101221984 101223635 -20033895 - Lx7 LINE L1 -608 2250 573 3 1357 701 312 34 10 chr12 101223976 101224183 -20033347 + ID_B1 SINE B4 6 217 -7 3 1357 276 334 55 1 chr12 101224201 101224336 -20033194 - MIR SINE MIR -90 172 39 3 1357 575 225 0 18 chr12 101224457 101224570 -20032960 - PB1D10 SINE Alu -6 111 1 3 1357 346 297 176 21 chr12 101224722 101225077 -20032453 + Charlie4a DNA MER1_type 21 431 -77 3 1357 234 310 28 57 chr12 101225302 101225408 -20032122 - Tigger14a DNA MER2_type -170 154 52 3 1357 22 0 0 0 chr12 101225881 101225903 -20031627 + AT_rich Low_complexity Low_complexity 1 22 0 3 1357 251 122 0 0 chr12 101227298 101227339 -20030191 - B1_Mus2 SINE Alu 0 147 107 3 1357 455 309 39 22 chr12 101228125 101228304 -20029226 + Lx7 LINE L1 5625 5806 -1890 3 1357 1086 201 174 40 chr12 101228610 101228932 -20028598 - ORR1D2 LTR MaLR 0 370 6 3 1357 1057 199 10 5 chr12 101229370 101229572 -20027958 + B3 SINE B2 1 203 -13 3 1357 22 0 0 0 chr12 101229572 101229594 -20027936 + AT_rich Low_complexity Low_complexity 1 22 0 3 1357 572 271 0 72 chr12 101229803 101229970 -20027560 - RSINE1 SINE B4 0 165 11 3 1357 633 61 0 0 chr12 101230989 101231071 -20026459 + (CATA)n Simple_repeat Simple_repeat 1 82 0 3 1357 225 324 54 9 chr12 101231884 101231996 -20025534 + MIR SINE MIR 109 225 -37 3 1357 389 217 0 35 chr12 101232138 101232224 -20025306 + RSINE1 SINE B4 16 98 -67 3 1357 836 271 40 46 chr12 101232231 101232533 -20024997 - ORR1E LTR MaLR -57 302 3 3 1357 2569 123 13 23 chr12 101233210 101233608 -20023922 - ORR1B1 LTR MaLR 0 394 1 3 1357 673 223 412 8 chr12 101235700 101235943 -20021587 - MTE2b LTR MaLR 0 379 39 3 1357 410 247 21 0 chr12 101235923 101236020 -20021510 - MTE2b LTR MaLR -280 99 1 3 1357 343 321 179 0 chr12 101236731 101236915 -20020615 - MER2 DNA MER2_type -70 275 59 3 1357 447 316 136 19 chr12 101236990 101237203 -20020327 - MER20B DNA MER1_type -448 335 98 3 1357 675 130 47 6 chr12 101237478 101237648 -20019882 + CT-rich Low_complexity Low_complexity 2 178 0 3 1357 2038 141 63 25 chr12 101237838 101238202 -20019328 - ORR1C1 LTR MaLR 0 378 1 3 1357 289 286 41 16 chr12 101239265 101239386 -20018144 + L1MD3 LINE L1 7855 7978 -17 3 1357 254 338 77 26 chr12 101239607 101239762 -20017768 - MER5B DNA MER1_type -12 166 4 3 1357 257 96 0 55 chr12 101240019 101240074 -20017456 + T-rich Low_complexity Low_complexity 1 52 0 3 1357 742 286 37 75 chr12 101240389 101240684 -20016846 + B4 SINE B4 1 284 -8 3 1357 418 207 61 78 chr12 101240707 101240924 -20016606 + MT2B LTR ERVL 1 309 -292 3 1357 459 0 0 0 chr12 101240995 101241046 -20016484 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3 1357 723 289 19 14 chr12 101241473 101241680 -20015850 - MER58A DNA MER1_type -14 210 3 3 1357 436 250 92 14 chr12 101241681 101241823 -20015707 + MER5B DNA MER1_type 26 178 0 3 1357 752 209 0 6 chr12 101241922 101242095 -20015435 + CT-rich Low_complexity Low_complexity 2 173 0 3 1357 602 233 25 36 chr12 101242352 101242579 -20014951 - ORR1D2 LTR MaLR -73 297 1 3 1357 1121 226 79 46 chr12 101242670 101243037 -20014493 - MTE2a LTR MaLR 0 379 1 3 1357 571 262 90 62 chr12 101243037 101243145 -20014385 - L1M3 LINE L1 -630 5550 5456 3 1357 299 0 78 0 chr12 101243145 101243196 -20014334 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 3 1357 571 262 90 62 chr12 101243196 101243343 -20014187 - L1M3 LINE L1 -725 5455 5289 3 1357 431 293 175 21 chr12 101243883 101244583 -20012947 - Charlie2b DNA MER1_type 0 2782 1949 3 1357 521 277 104 34 chr12 101244592 101244861 -20012669 + MLT1D LTR MaLR 10 297 -208 3 1357 712 277 68 5 chr12 101244872 101245093 -20012437 - ORR1D2 LTR MaLR 0 370 136 3 1357 291 266 55 31 chr12 101245457 101245585 -20011945 + MER5B DNA MER1_type 16 146 -32 3 1357 306 300 48 41 chr12 101245780 101245926 -20011604 + MLT1B LTR MaLR 240 386 -4 3 1357 499 297 78 33 chr12 101246301 101246500 -20011030 - B4 SINE B4 0 292 80 3 1357 242 29 29 0 chr12 101246500 101246535 -20010995 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1357 499 297 78 33 chr12 101246535 101246579 -20010951 - B4 SINE B4 -213 79 38 3 1357 255 79 0 0 chr12 101246593 101246631 -20010899 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1357 795 230 30 0 chr12 101246633 101246798 -20010732 - B3 SINE B2 -46 170 1 3 1357 414 183 61 0 chr12 101246798 101246874 -20010656 - B3 SINE B2 -135 81 1 3 1357 444 229 130 8 chr12 101247075 101247198 -20010332 + B1F1 SINE Alu 1 138 -11 3 1357 285 29 0 0 chr12 101247248 101247282 -20010248 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1357 265 50 16 62 chr12 101247548 101247612 -20009918 + (GTGTG)n Simple_repeat Simple_repeat 5 65 0 3 1357 653 48 84 12 chr12 101247612 101247779 -20009751 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1357 338 0 24 0 chr12 101248081 101248123 -20009407 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1357 186 43 0 0 chr12 101249147 101249170 -20008360 + (TATG)n Simple_repeat Simple_repeat 1 23 0 3 1357 305 94 38 0 chr12 101249269 101249322 -20008208 + (TATG)n Simple_repeat Simple_repeat 3 57 0 3 1357 404 295 114 23 chr12 101249473 101249605 -20007925 - L1MA7 LINE L1 -2 6289 6150 3 1357 2266 158 53 18 chr12 101249605 101249998 -20007532 + MTB_Mm LTR MaLR 1 407 0 3 1357 404 295 114 23 chr12 101249998 101250129 -20007401 - L1MA7 LINE L1 -142 6149 6002 3 1357 424 272 31 16 chr12 101250214 101250341 -20007189 - MLT1A0 LTR MaLR -32 473 345 3 1357 450 239 80 27 chr12 101250365 101250518 -20007012 + ORR1D2 LTR MaLR 1 151 -208 3 1357 1374 161 0 51 chr12 101250587 101250822 -20006708 + URR1B DNA MER1_type 3 225 0 3 1357 728 191 115 0 chr12 101250829 101251038 -20006492 + L1MC3 LINE L1 6856 7088 -697 3 1357 966 268 86 21 chr12 101251039 101251378 -20006152 - MLT1A0 LTR MaLR -3 362 2 3 1357 532 299 40 33 chr12 101251394 101251695 -20005835 + L1MC3 LINE L1 7113 7415 -370 3 1357 796 255 30 81 chr12 101251752 101252047 -20005483 + B4 SINE B4 2 281 -11 3 1357 427 33 33 0 chr12 101252053 101252114 -20005416 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1357 1236 56 0 0 chr12 101252135 101252295 -20005235 + B2_Mm2 SINE B2 2 161 -34 3 1357 222 37 0 0 chr12 101252295 101252322 -20005208 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 3 1357 516 272 80 40 chr12 101252331 101252557 -20004973 + L1MC3 LINE L1 7533 7767 -18 3 1357 252 0 0 0 chr12 101253353 101253381 -20004149 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1357 203 234 31 0 chr12 101253813 101253877 -20003653 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1357 234 302 114 15 chr12 101254401 101254532 -20002998 - MER5A DNA MER1_type -4 185 42 4 1357 564 283 29 35 chr12 101254665 101254822 -20002708 + B4A SINE B4 41 196 -96 4 1357 2922 150 22 104 chr12 101254822 101255505 -20002025 + RMER20B LTR ERVK 1 627 0 4 1357 325 196 56 102 chr12 101255505 101255608 -20001922 + B4A SINE B4 195 292 0 4 1357 650 173 0 8 chr12 101255608 101255742 -20001788 + (CA)n Simple_repeat Simple_repeat 1 133 0 4 1357 2958 242 99 41 chr12 101256517 101257438 -20000092 - Lx8 LINE L1 -233 7240 6267 4 1357 253 294 0 0 chr12 101257557 101257625 -19999905 - MIR SINE MIR -144 118 51 4 1357 1078 273 58 4 chr12 101257996 101258257 -19999273 + B4 SINE B4 16 290 -2 4 1357 400 299 48 11 chr12 101258271 101258460 -19999070 - RMER15 LTR ERVL -5 570 375 4 1357 323 291 0 6 chr12 101258778 101258958 -19998572 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1357 358 356 37 44 chr12 101259002 101259272 -19998258 + MamSINE1 SINE tRNA 8 275 -15 4 1357 3463 20 13 0 chr12 101259304 101259695 -19997835 - MTA_Mm LTR MaLR 0 396 1 4 1357 472 217 9 28 chr12 101260169 101260278 -19997252 + PB1D10 SINE Alu 10 116 -1 4 1357 292 282 13 0 chr12 101260392 101260470 -19997060 + ID2 SINE ID 2 80 -3 4 1357 696 319 80 11 chr12 101261448 101261692 -19995838 + B4A SINE B4 11 273 -19 4 1357 351 65 0 0 chr12 101261692 101261738 -19995792 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1357 696 319 80 11 chr12 101261738 101261756 -19995774 + B4A SINE B4 274 291 -1 4 1357 419 302 100 35 chr12 101262635 101262894 -19994636 - L1MA4 LINE L1 -330 5961 5691 4 1357 290 219 13 107 chr12 101263216 101263319 -19994211 - B4 SINE B4 0 292 234 4 1357 804 21 0 0 chr12 101263788 101263882 -19993648 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 4 1357 252 0 0 0 chr12 101264423 101264451 -19993079 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1357 493 280 44 13 chr12 101264499 101264658 -19992872 + RSINE1 SINE B4 1 164 -1 4 1357 236 284 61 12 chr12 101265126 101265208 -19992322 + MER91A DNA Tip100 1 86 -110 4 1357 2893 187 143 5 chr12 101265991 101266593 -19990937 - Lx5 LINE L1 -410 6640 5956 4 1357 16531 140 25 52 chr12 101266587 101269181 -19988349 - L1_Mur2 LINE L1 -1206 4671 2061 4 1357 258 32 0 0 chr12 101269181 101269212 -19988318 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1357 16531 140 25 52 chr12 101269212 101269782 -19987748 - L1_Mur2 LINE L1 -3817 2060 1591 4 1357 180 0 0 0 chr12 101270430 101270450 -19987080 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1357 1474 29 11 6 chr12 101270476 101270650 -19986880 + B2_Mm2 SINE B2 3 177 -18 4 1357 503 193 239 0 chr12 101270678 101270787 -19986743 - B1_Mur4 SINE Alu -13 137 3 4 1357 316 267 39 29 chr12 101270803 101270907 -19986623 + MT2A LTR ERVL 101 205 -328 4 1357 329 277 93 28 chr12 101270907 101271089 -19986441 - L1ME1 LINE L1 -148 6031 5838 4 1357 300 53 0 0 chr12 101271122 101271160 -19986370 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 4 1357 917 163 0 0 chr12 101271168 101271309 -19986221 - B1_Mus1 SINE Alu -6 142 2 4 1357 693 264 14 31 chr12 101271458 101271681 -19985849 - MER34A1 LTR ERV1 -234 353 135 4 1357 628 265 105 19 chr12 101271700 101271958 -19985572 + Tigger7 DNA MER2_type 40 319 -2172 4 1357 1405 160 0 4 chr12 101272048 101272274 -19985256 + URR1B DNA MER1_type 1 225 0 4 1357 428 254 42 0 chr12 101272334 101272452 -19985078 - MER34A1 LTR ERV1 -451 136 14 4 1357 237 65 0 0 chr12 101273000 101273031 -19984499 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1357 588 179 0 25 chr12 101273089 101273209 -19984321 - MTB_Mm LTR MaLR 0 407 291 4 1357 940 299 71 31 chr12 101273340 101273396 -19984134 - L1MA6 LINE L1 0 6300 6240 4 1357 258 32 0 0 chr12 101273396 101273427 -19984103 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1357 940 299 71 31 chr12 101273427 101273840 -19983690 - L1MA6 LINE L1 -61 6239 5812 4 1357 1123 187 51 9 chr12 101273840 101274056 -19983474 + URR1A DNA MER1_type 1 225 -1 4 1357 940 291 179 43 chr12 101274056 101274377 -19983153 - L1MA6 LINE L1 -489 5811 5404 4 1357 1100 150 58 10 chr12 101274377 101274585 -19982945 - ORR1C2 LTR MaLR 0 384 167 4 1357 1906 136 14 79 chr12 101274600 101274968 -19982562 + ORR1B1 LTR MaLR 43 386 -8 4 1357 892 135 0 0 chr12 101274974 101275122 -19982408 - ORR1C2 LTR MaLR -220 164 17 4 1357 1062 310 91 23 chr12 101275364 101275803 -19981727 + MLT2B3 LTR ERVL 3 471 -83 4 1357 613 300 86 4 chr12 101275861 101276105 -19981425 + MER2 DNA MER2_type 13 276 -69 4 1357 274 241 32 89 chr12 101276713 101276836 -19980694 - MIR SINE MIR -96 166 51 4 1357 183 42 0 0 chr12 101277391 101277415 -19980115 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 4 1357 486 0 0 0 chr12 101277479 101277533 -19979997 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 4 1357 588 293 53 0 chr12 101277540 101277690 -19979840 - B4A SINE B4 -134 158 1 4 1357 213 231 20 204 chr12 101279006 101279104 -19978426 + ID4 SINE ID 3 82 -1 4 1357 372 22 0 0 chr12 101279119 101279164 -19978366 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 1357 280 326 45 0 chr12 101279197 101279286 -19978244 - MIR SINE MIR -56 206 114 4 1357 184 208 41 20 chr12 101279441 101279490 -19978040 + L3 LINE CR1 1241 1290 -3199 4 1357 541 250 222 0 chr12 101279982 101280162 -19977368 + ID_B1 SINE B4 3 222 -2 4 1357 35 0 0 0 chr12 101280193 101280228 -19977302 + AT_rich Low_complexity Low_complexity 1 35 0 4 1357 282 304 24 3 chr12 101280464 101280645 -19976885 + L1MB4 LINE L1 5799 5981 -199 4 1357 297 191 44 0 chr12 101280715 101280783 -19976747 + L1MB4 LINE L1 6109 6179 -1 4 1357 213 175 0 0 chr12 101280809 101280849 -19976681 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1357 419 308 12 26 chr12 101280903 101281097 -19976433 + L1M5 LINE L1 4431 4622 -1524 4 1357 434 329 20 0 chr12 101281458 101281610 -19975920 + L1MD1 LINE L1 6086 6240 -2 4 1357 33 0 0 0 chr12 101281654 101281687 -19975843 + AT_rich Low_complexity Low_complexity 1 33 0 4 1357 953 210 61 5 chr12 101281689 101281885 -19975645 - B3 SINE B2 -2 214 8 4 1357 257 246 0 15 chr12 101282124 101282190 -19975340 + Lx8 LINE L1 7407 7471 -2 4 1357 180 0 0 0 chr12 101282194 101282214 -19975316 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1357 334 263 42 17 chr12 101282228 101282348 -19975182 + L1M5 LINE L1 5256 5378 -746 4 1357 386 274 88 0 chr12 101283190 101283292 -19974238 + RSINE1 SINE B4 3 113 -52 4 1357 22 35 0 0 chr12 101283317 101283346 -19974184 + AT_rich Low_complexity Low_complexity 1 29 0 4 1357 670 153 40 69 chr12 101283628 101283771 -19973759 + ORR1D1 LTR MaLR 9 154 -220 4 1357 1083 187 8 26 chr12 101283771 101284032 -19973498 + RMER17C LTR ERVK 1 256 -154 4 1357 296 141 14 14 chr12 101284032 101284104 -19973426 - RMER17C LTR ERVK 0 410 339 4 1357 2074 193 131 35 chr12 101284229 101284772 -19972758 - RMER17C-int LTR ERVK -2642 596 2 4 1357 1476 148 38 169 chr12 101284773 101285245 -19972285 - RMER17C LTR ERVK 0 410 1 4 1357 888 118 45 26 chr12 101285245 101285401 -19972129 + RMER17C LTR ERVK 252 410 0 4 1357 379 228 181 39 chr12 101285401 101285552 -19971978 + ORR1D1 LTR MaLR 150 322 -52 4 1357 622 242 0 39 chr12 101285744 101285899 -19971631 + B1_Mur1 SINE Alu 1 149 0 4 1357 189 0 0 0 chr12 101285901 101285922 -19971608 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 4 1357 956 143 7 0 chr12 101285985 101286132 -19971398 + B1_Mur4 SINE Alu 3 150 0 4 1357 425 19 0 18 chr12 101286137 101286192 -19971338 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1357 402 21 0 0 chr12 101286285 101286332 -19971198 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1357 944 138 14 14 chr12 101286742 101286889 -19970641 + B1_Mus1 SINE Alu 1 147 -1 4 1357 938 81 15 0 chr12 101286910 101287046 -19970484 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 4 1357 238 310 39 20 chr12 101289944 101290046 -19967484 + MLT1E3 LTR MaLR 514 617 -7 4 1357 345 329 88 37 chr12 101290645 101290860 -19966670 - MLT2B3 LTR ERVL -7 547 322 4 1357 235 174 20 61 chr12 101290919 101290968 -19966562 - MTEa LTR MaLR -315 64 18 4 1357 207 0 0 0 chr12 101291708 101291731 -19965799 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1357 23 0 0 0 chr12 101291747 101291770 -19965760 + AT_rich Low_complexity Low_complexity 1 23 0 4 1357 243 241 0 17 chr12 101291896 101291955 -19965575 + GA-rich Low_complexity Low_complexity 3 60 0 4 1357 288 0 0 0 chr12 101292657 101292689 -19964841 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1357 1352 77 11 0 chr12 101292694 101292875 -19964655 - B2_Mm1t SINE B2 -7 186 4 4 1357 1496 185 126 40 chr12 101292891 101293240 -19964290 - MTE2b LTR MaLR 0 379 1 4 1357 299 220 157 20 chr12 101293307 101293409 -19964121 + ORR1E LTR MaLR 22 137 -222 4 1357 341 231 0 93 chr12 101293499 101293585 -19963945 + RSINE1 SINE B4 82 159 -6 4 1357 217 303 168 13 chr12 101293717 101293901 -19963629 + MIRb SINE MIR 1 206 -2 4 1357 406 191 88 41 chr12 101294217 101294364 -19963166 - Lx5 LINE L1 0 7050 6897 4 1357 562 305 47 86 chr12 101294740 101294973 -19962557 - Lx8 LINE L1 -198 7275 7052 4 1357 456 19 0 0 chr12 101294973 101295026 -19962504 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1357 276 279 178 28 chr12 101295030 101295137 -19962393 - B4A SINE B4 -162 130 8 4 1357 381 252 137 20 chr12 101295733 101295879 -19961651 + RMER15 LTR ERVL 348 510 -65 4 1357 280 250 210 0 chr12 101296000 101296100 -19961430 - MLT1A0 LTR MaLR 0 374 254 4 1357 584 196 255 0 chr12 101296179 101296332 -19961198 - ID_B1 SINE B4 -32 192 1 4 1357 292 280 70 23 chr12 101296339 101296467 -19961063 - MLT1A0 LTR MaLR -220 145 12 4 1357 1171 70 0 0 chr12 101296472 101296615 -19960915 + B1_Mm SINE Alu 1 143 -4 4 1357 723 54 0 0 chr12 101296617 101296709 -19960821 + (GAA)n Simple_repeat Simple_repeat 2 93 0 4 1357 1475 68 5 5 chr12 101297052 101297244 -19960286 + B2_Mm2 SINE B2 1 192 -3 4 1357 758 281 5 11 chr12 101298051 101298221 -19959309 + B4A SINE B4 107 276 -16 4 1357 519 82 0 0 chr12 101298221 101298294 -19959236 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1357 758 281 5 11 chr12 101298294 101298310 -19959220 + B4A SINE B4 277 292 0 4 1357 222 402 23 0 chr12 101298646 101298733 -19958797 + MER91A DNA Tip100 14 102 -94 4 1357 272 269 0 15 chr12 101298737 101298805 -19958725 + Zaphod2 DNA Tip100 3456 3522 -2 4 1357 1135 153 112 15 chr12 101298936 101299142 -19958388 + URR1A DNA MER1_type 1 226 0 5 1357 295 304 48 10 chr12 101301848 101301951 -19955579 - PB1D10 SINE Alu -10 107 1 5 1357 303 196 20 20 chr12 101302085 101302184 -19955346 + GA-rich Low_complexity Low_complexity 1 99 0 5 1357 526 245 140 5 chr12 101302704 101302897 -19954633 - MER113 DNA MER1_type -99 422 204 5 1357 349 323 0 21 chr12 101302918 101303013 -19954517 + ID_B1 SINE B4 129 221 -3 5 1357 631 210 133 0 chr12 101303013 101303156 -19954374 + RSINE1 SINE B4 4 165 0 5 1357 292 321 98 52 chr12 101303207 101303381 -19954149 - MER113 DNA MER1_type -298 223 42 5 1357 245 187 13 0 chr12 101303893 101303968 -19953562 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1357 552 205 0 0 chr12 101303995 101304151 -19953379 + (CA)n Simple_repeat Simple_repeat 2 157 0 5 1357 231 286 52 52 chr12 101304457 101304553 -19952977 - L1MEg LINE L1 -4780 1728 1633 5 1357 911 243 105 30 chr12 101304617 101304884 -19952646 - B4A SINE B4 0 292 6 5 1357 406 342 19 19 chr12 101304924 101305079 -19952451 - L1MEg LINE L1 -4742 1675 1521 5 1357 347 60 20 0 chr12 101305086 101305136 -19952394 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1357 781 289 116 75 chr12 101305185 101305286 -19952244 + L1MC4a LINE L1 7184 7281 -601 5 1357 333 243 14 0 chr12 101305286 101305356 -19952174 + ID4_ SINE ID 2 72 -11 5 1357 781 289 116 75 chr12 101305356 101305924 -19951606 + L1MC4a LINE L1 7282 7881 -1 5 1357 251 308 0 44 chr12 101306072 101306140 -19951390 + MER5A DNA MER1_type 17 81 -108 5 1357 497 34 0 0 chr12 101306660 101306719 -19950811 + B1_Mus2 SINE Alu 78 136 -11 5 1357 825 107 0 0 chr12 101306719 101306841 -19950689 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 5 1357 22 0 0 0 chr12 101307110 101307132 -19950398 + AT_rich Low_complexity Low_complexity 1 22 0 5 1357 5994 154 139 14 chr12 101307430 101307536 -19949994 + Lx7 LINE L1 4522 4635 -1245 5 1357 378 0 0 0 chr12 101307536 101307578 -19949952 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1357 9537 163 111 31 chr12 101307578 101309295 -19948235 + Lx7 LINE L1 4636 6537 -1159 5 1357 2180 180 81 35 chr12 101309295 101309682 -19947848 + RLTR16 LTR ERVK 1 413 -92 5 1357 279 0 0 0 chr12 101309682 101309713 -19947817 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1357 2180 180 81 35 chr12 101309713 101309808 -19947722 + RLTR16 LTR ERVK 414 505 0 5 1357 9537 179 62 62 chr12 101309808 101310748 -19946782 + Lx7 LINE L1 6538 7434 -262 5 1357 198 71 0 0 chr12 101310748 101310776 -19946754 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1357 317 24 24 0 chr12 101310776 101310817 -19946713 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1357 9537 179 62 62 chr12 101310817 101311055 -19946475 + Lx7 LINE L1 7435 7683 -13 5 1357 1141 296 47 100 chr12 101311055 101311655 -19945875 - MER34A LTR ERV1 -3 568 1 5 1357 316 196 0 0 chr12 101311709 101311765 -19945765 - PB1 SINE Alu 0 127 72 5 1357 453 221 275 81 chr12 101311869 101312091 -19945439 - B4A SINE B4 -6 286 22 5 1357 238 36 0 0 chr12 101312401 101312429 -19945101 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1357 721 148 41 17 chr12 101312431 101312603 -19944927 + GA-rich Low_complexity Low_complexity 4 179 0 5 1357 363 382 35 20 chr12 101312846 101312877 -19944653 + HAL1b LINE L1 342 370 -1639 5 1357 1361 89 21 0 chr12 101312877 101313067 -19944463 + B2_Mm2 SINE B2 2 195 0 5 1357 363 382 35 20 chr12 101313067 101313238 -19944292 + HAL1b LINE L1 371 546 -1463 5 1357 210 114 0 43 chr12 101313652 101313698 -19943832 + A-rich Low_complexity Low_complexity 2 45 0 5 1357 354 290 88 31 chr12 101313863 101314023 -19943507 - HAL1b LINE L1 -1113 896 728 5 1357 309 275 111 30 chr12 101314143 101314278 -19943252 - MIRb SINE MIR -8 260 115 5 1357 4419 70 5 3 chr12 101314301 101314884 -19942646 - MT2B2 LTR ERVL 0 584 1 5 1357 1221 247 7 25 chr12 101315466 101315740 -19941790 - B4 SINE B4 -18 274 6 5 1357 183 80 0 0 chr12 101315840 101315865 -19941665 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 5 1357 258 250 42 0 chr12 101315871 101315943 -19941587 - PB1D9 SINE Alu -1 119 45 5 1357 291 85 0 0 chr12 101315948 101315995 -19941535 + (CCCCAG)n Simple_repeat Simple_repeat 1 47 0 5 1357 530 278 58 50 chr12 101316004 101316364 -19941166 + HAL1b LINE L1 1616 1978 -31 5 1357 1315 220 107 0 chr12 101316616 101316916 -19940614 + MTE2b LTR MaLR 1 332 -47 5 1357 3319 44 10 0 chr12 101316916 101317304 -19940226 + MTA_Mm LTR MaLR 1 392 -4 5 1357 1420 84 16 0 chr12 101317304 101317494 -19940036 + B2_Mm2 SINE B2 2 194 -1 5 169 739 191 16 14 chr12 101318596 101318747 -19938783 + ORR1B1 LTR MaLR 1 137 -222 5 1358 953 97 0 0 chr12 101318750 101318884 -19938646 + ORR1B1 LTR MaLR 261 394 0 5 1358 212 116 0 65 chr12 101319137 101319158 -19938372 + A-rich Low_complexity Low_complexity 1 19 0 5 1358 850 204 0 0 chr12 101319158 101319305 -19938225 + B1_Mus2 SINE Alu 1 147 0 5 1358 212 116 0 65 chr12 101319305 101319329 -19938201 + A-rich Low_complexity Low_complexity 20 43 0 5 1358 259 287 8 115 chr12 101319418 101319540 -19937990 + PB1D10 SINE Alu 2 110 -7 5 1358 2004 110 22 107 chr12 101319577 101319609 -19937921 - ORR1B1 LTR MaLR -19 375 353 5 1358 1484 63 21 0 chr12 101319609 101319800 -19937730 - B2_Mm2 SINE B2 0 195 1 5 1358 2004 110 22 107 chr12 101319800 101320133 -19937397 - ORR1B1 LTR MaLR -42 352 41 5 1358 228 366 43 0 chr12 101320526 101320619 -19936911 - L2b LINE L2 0 3375 3279 5 1358 1130 131 45 11 chr12 101320744 101320922 -19936608 + URR1A DNA MER1_type 43 226 0 5 1358 601 256 80 30 chr12 101320922 101320955 -19936575 - CYRA11_Mm Unknown Y-chromosome -440 177 135 5 1358 771 276 9 40 chr12 101320991 101321217 -19936313 - ID_B1 SINE B4 -4 220 2 5 1358 750 211 0 0 chr12 101321326 101321554 -19935976 + (TG)n Simple_repeat Simple_repeat 1 228 0 5 1358 927 161 0 0 chr12 101321578 101321758 -19935772 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1358 510 17 0 0 chr12 101322831 101322890 -19934640 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 1358 271 142 42 101 chr12 101322891 101322964 -19934566 - MTEb LTR MaLR -15 364 270 5 1358 662 294 66 30 chr12 101323218 101323583 -19933947 - L1MD3 LINE L1 -5 7990 7613 5 1358 744 186 0 0 chr12 101323583 101323697 -19933833 + MTD LTR MaLR 1 114 -305 5 1358 483 48 0 0 chr12 101323697 101323759 -19933771 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 5 1358 744 186 0 0 chr12 101323759 101323773 -19933757 + MTD LTR MaLR 115 128 -291 5 1358 1282 110 0 91 chr12 101324010 101324251 -19933279 - L1_Mus4 LINE L1 -6 6630 6412 5 1358 3988 86 42 5 chr12 101324252 101324915 -19932615 + L1_Mus4 LINE L1 5243 5924 -712 5 1358 1840 152 30 3 chr12 101324917 101325215 -19932315 + MTD LTR MaLR 114 419 0 5 1358 754 268 148 4 chr12 101325219 101325505 -19932025 - L1MD3 LINE L1 -382 7613 7072 5 1358 241 244 50 25 chr12 101325839 101325919 -19931611 - L1MC3 LINE L1 -632 7153 7072 5 1358 1606 314 65 8 chr12 101326270 101326794 -19930736 + MER77 LTR ERVL 44 597 -10 5 1358 748 247 36 11 chr12 101327367 101327556 -19929974 + MTE2a LTR MaLR 145 365 -14 5 1358 2567 71 9 0 chr12 101328234 101328558 -19928972 - ORR1A2 LTR MaLR 0 327 1 5 1358 1459 63 21 0 chr12 101329821 101330010 -19927520 + B2_Mm1t SINE B2 1 193 0 5 1358 214 247 140 93 chr12 101330833 101330940 -19926590 + PB1 SINE Alu 11 122 -5 5 1358 300 137 39 0 chr12 101331985 101332036 -19925494 + MIRc SINE MIR 41 93 -175 5 1358 2270 129 54 100 chr12 101332069 101332567 -19924963 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1358 435 288 82 86 chr12 101332909 101333201 -19924329 + B4A SINE B4 2 292 0 5 1358 219 255 0 18 chr12 101333206 101333262 -19924268 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1358 210 79 50 50 chr12 101333317 101333357 -19924173 + C-rich Low_complexity Low_complexity 2 41 0 5 1358 1133 69 14 0 chr12 101333819 101333964 -19923566 - B1_Mus1 SINE Alu 0 148 2 5 1358 238 303 84 113 chr12 101334055 101334293 -19923237 + ORR1E LTR MaLR 80 301 -58 5 1358 6490 47 10 1 chr12 101334293 101335087 -19922443 - L1Md_F2 LINE L1 0 6582 5782 5 1358 238 303 84 113 chr12 101335087 101335123 -19922407 + ORR1E LTR MaLR 302 345 -14 5 1358 275 319 77 0 chr12 101335826 101335917 -19921613 - B1F2 SINE Alu -51 98 1 5 1358 237 138 119 30 chr12 101335932 101335999 -19921531 - MIRm SINE MIR -111 165 93 5 1358 242 204 20 0 chr12 101336595 101336644 -19920886 - MIRc SINE MIR -60 208 159 5 1358 186 247 90 90 chr12 101336797 101336886 -19920644 + MIR SINE MIR 34 122 -140 5 1358 195 69 0 0 chr12 101336916 101336945 -19920585 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 5 1358 256 214 14 54 chr12 101337046 101337120 -19920410 - MLT1C LTR MaLR -335 132 62 5 1358 576 73 0 0 chr12 101337195 101337277 -19920253 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1358 546 275 162 21 chr12 101337286 101337520 -19920010 - B4A SINE B4 -18 274 8 5 1358 186 326 43 11 chr12 101337748 101337841 -19919689 + L2c LINE L2 3279 3374 -13 5 1358 349 286 14 0 chr12 101338010 101338080 -19919450 - ID4_ SINE ID -1 82 12 5 1358 189 0 0 0 chr12 101339517 101339538 -19917992 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 1358 356 262 22 67 chr12 101339614 101339704 -19917826 + RSINE1 SINE B4 72 157 -8 5 1358 386 253 77 49 chr12 101339707 101339890 -19917640 + Lx8 LINE L1 7256 7443 -30 5 1358 544 190 0 12 chr12 101340375 101340545 -19916985 + (TG)n Simple_repeat Simple_repeat 1 168 0 5 1358 660 239 121 44 chr12 101340623 101340872 -19916658 - B4A SINE B4 -24 268 1 5 1358 262 306 182 0 chr12 101341085 101341206 -19916324 + L1MD LINE L1 5437 5579 -2416 5 1358 529 139 19 0 chr12 101341517 101341625 -19915905 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 1358 326 238 62 31 chr12 101341670 101341800 -19915730 + L1ME2z LINE L1 5831 5964 -480 5 1358 208 322 11 11 chr12 101342065 101342156 -19915374 + GA-rich Low_complexity Low_complexity 4 94 0 5 1358 222 247 242 21 chr12 101342372 101342467 -19915063 - MIRb SINE MIR -36 232 117 5 1358 233 284 0 29 chr12 101342655 101342724 -19914806 + L2a LINE L2 3353 3419 -7 5 1358 665 255 136 8 chr12 101343218 101343475 -19914055 + B4A SINE B4 1 290 -2 5 1358 222 116 0 0 chr12 101343482 101343525 -19914005 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1358 305 289 122 0 chr12 101343527 101343617 -19913913 + PB1D10 SINE Alu 5 105 -12 5 1358 394 321 70 16 chr12 101343656 101343843 -19913687 + L1ME4a LINE L1 5927 6123 -1 5 1358 691 114 107 64 chr12 101344366 101344506 -19913024 - B1_Mus2 SINE Alu 0 147 2 6 1358 545 265 22 14 chr12 101344522 101344660 -19912870 + RMER15 LTR ERVL 112 250 -325 6 1358 189 0 0 0 chr12 101344760 101344781 -19912749 + (CG)n Simple_repeat Simple_repeat 2 22 0 6 1358 522 0 0 0 chr12 101344781 101344838 -19912692 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1358 248 326 11 43 chr12 101345127 101345220 -19912310 + RSINE1 SINE B4 76 165 0 6 1358 292 281 96 7 chr12 101345280 101345416 -19912114 - L1MA6 LINE L1 -43 6257 6110 6 1358 441 92 0 68 chr12 101345938 101346055 -19911475 + C-rich Low_complexity Low_complexity 5 113 0 6 1358 303 28 0 0 chr12 101346120 101346156 -19911374 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1358 903 56 136 0 chr12 101346158 101346283 -19911247 - B1_Mus1 SINE Alu -5 143 2 6 1358 198 0 0 0 chr12 101346333 101346355 -19911175 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1358 547 172 71 0 chr12 101346714 101346813 -19910717 - B1F2 SINE Alu 0 149 44 6 1358 26 0 0 0 chr12 101347721 101347747 -19909783 + AT_rich Low_complexity Low_complexity 1 26 0 6 1358 21 0 0 0 chr12 101348324 101348345 -19909185 + AT_rich Low_complexity Low_complexity 1 21 0 6 1358 1085 93 0 0 chr12 101349114 101349254 -19908276 + B1_Mus1 SINE Alu 1 140 -8 6 1358 222 37 0 0 chr12 101349254 101349281 -19908249 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1358 264 315 74 0 chr12 101349283 101349391 -19908139 - MIRb SINE MIR -33 235 120 6 1358 256 342 74 16 chr12 101349428 101349550 -19907980 + MIRb SINE MIR 14 142 -126 6 1358 499 198 8 49 chr12 101349582 101349704 -19907826 + B3A SINE B2 15 131 -67 6 1358 455 279 47 0 chr12 101349865 101349994 -19907536 + RSINE1 SINE B4 31 165 0 6 1358 180 0 0 0 chr12 101351022 101351042 -19906488 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1358 223 222 92 53 chr12 101351535 101351573 -19905957 + B4A SINE B4 45 85 -207 6 1358 294 194 221 21 chr12 101351573 101351660 -19905870 + PB1D9 SINE Alu 1 108 -12 6 1358 977 47 8 0 chr12 101351660 101351787 -19905743 + (GAAA)n Simple_repeat Simple_repeat 3 130 0 6 1358 1707 26 0 0 chr12 101351787 101351979 -19905551 + B2_Mm1a SINE B2 2 193 0 6 1358 251 157 20 0 chr12 101351985 101352036 -19905494 + GA-rich Low_complexity Low_complexity 1 52 0 6 1358 429 167 0 0 chr12 101352063 101352141 -19905389 + GA-rich Low_complexity Low_complexity 1 78 0 6 1358 511 271 62 28 chr12 101352238 101352382 -19905148 - RSINE1 SINE B4 -16 149 1 6 1358 303 286 61 10 chr12 101352383 101352482 -19905048 - PB1D7 SINE Alu -5 115 12 6 1358 22 0 0 0 chr12 101352583 101352605 -19904925 + AT_rich Low_complexity Low_complexity 1 22 0 6 1358 638 175 0 0 chr12 101352642 101352739 -19904791 - B3 SINE B2 -117 99 3 6 1358 598 221 37 22 chr12 101352812 101352946 -19904584 - RSINE1 SINE B4 -29 136 1 6 1358 25 31 0 0 chr12 101352979 101353011 -19904519 + AT_rich Low_complexity Low_complexity 1 32 0 6 1358 274 233 25 76 chr12 101355201 101355280 -19902250 - MER5B DNA MER1_type -7 171 97 6 1358 298 200 33 0 chr12 101356112 101356172 -19901358 + MER5B DNA MER1_type 96 157 -21 6 1358 238 256 76 22 chr12 101356218 101356310 -19901220 + ZP3AR Satellite Satellite 8 104 -108 6 1358 920 94 8 0 chr12 101356252 101356379 -19901151 + B2_Mm2 SINE B2 2 129 -66 6 1358 413 278 60 8 chr12 101356427 101356561 -19900969 - B1F SINE Alu -8 141 1 6 1358 895 150 106 0 chr12 101356684 101356844 -19900686 - URR1A DNA MER1_type -16 210 34 6 1358 484 275 27 27 chr12 101356888 101357034 -19900496 + RSINE1 SINE B4 3 148 -17 6 1358 499 316 143 32 chr12 101358474 101358726 -19898804 + B4 SINE B4 3 282 -10 6 1358 628 140 103 0 chr12 101360219 101360326 -19897204 - B1_Mus1 SINE Alu -1 147 30 6 1358 416 214 47 12 chr12 101360392 101360477 -19897053 - B3A SINE B2 -69 129 42 6 1358 703 184 35 33 chr12 101360592 101360759 -19896771 + B3 SINE B2 24 188 -5 6 1358 195 42 0 0 chr12 101361127 101361151 -19896379 + (TTTC)n Simple_repeat Simple_repeat 4 27 0 6 1358 311 144 185 22 chr12 101361151 101361243 -19896287 - PB1D9 SINE Alu -13 107 1 6 1358 1135 192 208 47 chr12 101361556 101361917 -19895613 - MTD LTR MaLR 0 419 1 6 1358 557 275 158 57 chr12 101362223 101362539 -19894991 - MLT1E2 LTR MaLR -157 470 123 6 1358 274 299 92 0 chr12 101362571 101362658 -19894872 - B1F SINE Alu -12 137 43 6 1358 308 244 12 12 chr12 101365100 101365183 -19892347 + GA-rich Low_complexity Low_complexity 3 85 0 6 1358 1257 48 0 0 chr12 101365468 101365614 -19891916 - B1_Mus2 SINE Alu -1 146 1 6 1358 510 17 0 0 chr12 101365979 101366038 -19891492 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1358 715 263 49 105 chr12 101366529 101366835 -19890695 + B4 SINE B4 4 292 0 6 1358 231 262 0 48 chr12 101369872 101369956 -19887574 + Lx8 LINE L1 7392 7471 -2 6 1358 21 0 0 0 chr12 101369956 101369977 -19887553 + AT_rich Low_complexity Low_complexity 1 21 0 6 1358 226 237 68 0 chr12 101371117 101371176 -19886354 + ORR1B1-int LTR MaLR 1052 1114 -395 6 1358 473 268 8 43 chr12 101371985 101372102 -19885428 + ID_B1 SINE B4 61 173 -51 6 1358 556 162 100 10 chr12 101372015 101372115 -19885415 + PB1D10 SINE Alu 7 115 -2 6 1358 749 282 77 59 chr12 101372258 101372544 -19884986 + B4A SINE B4 2 292 0 6 1358 269 276 90 112 chr12 101372921 101373109 -19884421 + MER3 DNA MER1_type 1 184 -25 6 1358 249 180 0 0 chr12 101373381 101373431 -19884099 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1358 312 307 114 0 chr12 101373441 101373643 -19883887 + L1MD2 LINE L1 5680 5904 -455 6 1358 559 314 100 19 chr12 101373890 101374250 -19883280 + L1MB3 LINE L1 5788 6176 -7 6 1358 585 239 137 94 chr12 101374267 101374544 -19882986 + B4A SINE B4 4 292 0 6 1358 189 0 0 0 chr12 101374672 101374693 -19882837 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 6 1358 342 243 0 0 chr12 101374813 101374916 -19882614 + (CA)n Simple_repeat Simple_repeat 2 104 0 6 1358 639 0 0 0 chr12 101375505 101375576 -19881954 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 6 1358 398 69 0 17 chr12 101375576 101375635 -19881895 + (GGGGA)n Simple_repeat Simple_repeat 3 60 0 6 1358 238 232 186 29 chr12 101376122 101376224 -19881306 + MLT1F2 LTR MaLR 4 121 -439 6 1358 1022 50 41 54 chr12 101376943 101377090 -19880440 + B1_Mus2 SINE Alu 1 145 -2 6 1358 198 71 0 0 chr12 101377092 101377120 -19880410 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 6 1358 226 229 0 19 chr12 101377141 101377201 -19880329 + ID4_ SINE ID 34 92 -60 6 1358 803 268 6 0 chr12 101378474 101378653 -19878877 + B3A SINE B2 3 182 -16 6 1358 22 26 0 25 chr12 101378688 101378700 -19878830 + AT_rich Low_complexity Low_complexity 1 12 0 6 1358 823 188 7 0 chr12 101378700 101378838 -19878692 - B1_Mus2 SINE Alu -8 139 1 6 1358 22 26 0 25 chr12 101378838 101378865 -19878665 + AT_rich Low_complexity Low_complexity 1 27 0 6 1358 252 77 0 0 chr12 101380842 101380881 -19876649 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 6 1358 325 279 11 11 chr12 101381037 101381124 -19876406 - B4A SINE B4 -205 87 1 6 1358 211 265 73 0 chr12 101381298 101381366 -19876164 + ID4_ SINE ID 2 74 -9 6 1358 273 306 122 35 chr12 101381612 101381727 -19875803 + PB1 SINE Alu 3 127 0 6 1358 224 222 91 65 chr12 101381744 101381821 -19875709 + ID4_ SINE ID 2 80 -3 6 1358 243 103 0 0 chr12 101381821 101381860 -19875670 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 6 1358 554 258 132 8 chr12 101382489 101382747 -19874783 + L1ME2z LINE L1 5592 5881 -563 6 1358 346 226 53 28 chr12 101383375 101383498 -19874032 - PB1D9 SINE Alu -25 123 7 6 1358 252 196 34 51 chr12 101383767 101383826 -19873704 - L2b LINE L2 -4 3371 3314 6 1358 243 88 0 0 chr12 101383992 101384026 -19873504 + (GGA)n Simple_repeat Simple_repeat 2 35 0 6 1358 207 69 0 0 chr12 101384197 101384226 -19873304 + (CAG)n Simple_repeat Simple_repeat 1 29 0 6 1358 250 191 43 0 chr12 101384538 101384585 -19872945 + PB1 SINE Alu 27 75 -52 6 1358 1620 186 79 31 chr12 101384722 101385077 -19872453 - ORR1D1 LTR MaLR -2 372 1 6 1358 217 298 126 11 chr12 101386320 101386415 -19871115 + B4 SINE B4 31 136 -156 6 1358 1114 187 63 10 chr12 101386494 101386699 -19870831 + B3 SINE B2 1 216 0 6 1358 1515 53 5 0 chr12 101386734 101386922 -19870608 + B2_Mm1a SINE B2 5 193 0 6 1358 226 286 13 13 chr12 101386936 101387014 -19870516 + B4A SINE B4 215 292 0 6 1358 543 161 0 0 chr12 101387014 101387132 -19870398 + (CA)n Simple_repeat Simple_repeat 1 118 0 6 1358 434 86 0 2 chr12 101387582 101387645 -19869885 + B1_Mus1 SINE Alu 1 62 -87 6 1358 392 298 19 37 chr12 101387807 101387915 -19869615 + PB1D10 SINE Alu 2 107 -10 6 1358 192 77 0 0 chr12 101388168 101388194 -19869336 + (TTC)n Simple_repeat Simple_repeat 1 26 0 6 1358 1032 207 37 5 chr12 101388470 101388688 -19868842 - URR1B DNA MER1_type 0 225 1 6 1358 266 295 84 0 chr12 101389888 101389983 -19867547 + B1F SINE Alu 35 137 -12 6 1358 736 237 20 18 chr12 101390193 101390386 -19867144 - B3 SINE B2 -4 191 1 6 1358 561 242 32 32 chr12 101390432 101390556 -19866974 - RSINE1 SINE B4 -39 126 3 6 1358 1587 292 94 28 chr12 101390747 101391544 -19865986 - L1MB7 LINE L1 -21 6163 5314 6 1358 216 0 0 0 chr12 101391572 101391596 -19865934 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1358 346 298 139 17 chr12 101391810 101392021 -19865509 - MIRb SINE MIR -21 247 20 7 1358 198 0 0 0 chr12 101392484 101392506 -19865024 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1358 499 198 9 26 chr12 101392917 101393031 -19864499 + B2_Mm2 SINE B2 75 186 -9 7 1358 255 228 100 0 chr12 101393499 101393566 -19863964 + PB1D9 SINE Alu 7 79 -71 7 1358 230 0 33 0 chr12 101393601 101393631 -19863899 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 7 1358 912 220 16 11 chr12 101393634 101393822 -19863708 + B3 SINE B2 2 190 -26 7 1358 401 51 0 33 chr12 101393822 101393883 -19863647 + (CATA)n Simple_repeat Simple_repeat 4 62 0 7 1358 268 304 75 21 chr12 101394165 101394259 -19863271 - L2a LINE L2 -21 3405 3307 7 1358 726 126 0 19 chr12 101394421 101394526 -19863004 - B3 SINE B2 -109 107 5 7 1358 216 0 0 0 chr12 101394620 101394644 -19862886 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1358 757 186 16 0 chr12 101395715 101395839 -19861691 + B3 SINE B2 3 128 -88 7 1358 250 263 122 84 chr12 101395853 101396115 -19861415 + L1MC5 LINE L1 7226 7497 -464 7 1358 316 217 145 0 chr12 101396165 101396234 -19861296 + PB1D9 SINE Alu 3 81 -39 7 1358 3161 39 47 0 chr12 101396238 101396620 -19860910 - MTB LTR MaLR 0 400 1 7 1358 362 91 52 0 chr12 101396631 101396708 -19860822 + (GA)n Simple_repeat Simple_repeat 2 82 0 7 1358 814 182 0 34 chr12 101396818 101396966 -19860564 - B1_Mus1 SINE Alu 0 148 6 7 1358 299 277 0 88 chr12 101396888 101396979 -19860551 - MT2B LTR ERVL -362 239 157 7 1358 673 200 28 14 chr12 101398286 101398428 -19859102 + B1_Mur2 SINE Alu 1 144 -5 7 1358 244 308 279 0 chr12 101398658 101398762 -19858768 + RSINE1 SINE B4 2 134 -31 7 1358 765 154 15 37 chr12 101399056 101399191 -19858339 + B1_Mur3 SINE Alu 5 136 -13 7 1358 3052 26 3 0 chr12 101399191 101399535 -19857995 - ORR1A0 LTR MaLR -1 345 1 7 1358 183 80 0 0 chr12 101399835 101399860 -19857670 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1358 255 73 55 0 chr12 101399916 101399971 -19857559 + (TTTTTG)n Simple_repeat Simple_repeat 2 59 0 7 1358 778 197 15 0 chr12 101400140 101400272 -19857258 - B1_Mur3 SINE Alu -13 136 3 7 1358 291 163 0 0 chr12 101400421 101400464 -19857066 + B3A SINE B2 19 61 -137 7 1358 189 74 0 0 chr12 101400476 101400503 -19857027 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 7 1358 1233 28 14 0 chr12 101400503 101400647 -19856883 - B1_Mm SINE Alu 0 147 2 7 1358 918 167 0 7 chr12 101400789 101400934 -19856596 + B1_Mus2 SINE Alu 1 144 -3 7 1358 246 260 14 14 chr12 101401310 101401384 -19856146 + CT-rich Low_complexity Low_complexity 1 74 0 7 1358 208 196 98 0 chr12 101402015 101402178 -19855352 + G-rich Low_complexity Low_complexity 2 180 0 7 1358 270 0 0 0 chr12 101402217 101402247 -19855283 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1358 536 257 199 11 chr12 101402303 101402484 -19855046 - B3 SINE B2 0 216 2 7 1358 466 119 0 0 chr12 101402636 101402703 -19854827 - B3A SINE B2 -131 67 1 7 1358 352 215 29 88 chr12 101403589 101403691 -19853839 - MER57-int LTR ERV1 -276 7261 7166 7 1358 1128 173 91 0 chr12 101404000 101404197 -19853333 + B3 SINE B2 1 215 -1 7 1358 216 97 0 0 chr12 101404217 101404248 -19853282 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 7 1358 523 267 68 7 chr12 101404680 101404827 -19852703 - MER2 DNA MER2_type -14 331 176 7 1358 252 286 32 0 chr12 101404851 101404914 -19852616 + MER77 LTR ERVL 539 603 -4 7 1358 625 210 119 36 chr12 101404926 101405094 -19852436 - B3A SINE B2 -15 183 2 7 1358 22 35 0 0 chr12 101405655 101405684 -19851846 + AT_rich Low_complexity Low_complexity 1 29 0 7 1358 180 148 16 32 chr12 101406441 101406504 -19851026 + G-rich Low_complexity Low_complexity 4 65 0 7 1358 253 311 14 0 chr12 101406719 101406793 -19850737 + ID4_ SINE ID 9 83 0 7 1358 1230 54 0 0 chr12 101407096 101407243 -19850287 + B1_Mus2 SINE Alu 1 147 0 7 1358 267 103 0 0 chr12 101407244 101407283 -19850247 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 7 1358 21 0 0 0 chr12 101407345 101407366 -19850164 + GC_rich Low_complexity Low_complexity 1 21 0 7 1358 764 266 186 0 chr12 101407583 101407820 -19849710 - MTE2b LTR MaLR -6 373 93 7 1358 504 282 0 0 chr12 101407822 101407925 -19849605 - B3A SINE B2 -87 111 9 7 1358 771 298 69 36 chr12 101408499 101408802 -19848728 + ORR1E LTR MaLR 1 313 -46 7 1358 3091 32 0 0 chr12 101408859 101409205 -19848325 + ORR1A0 LTR MaLR 1 346 0 7 1358 423 0 0 0 chr12 101409506 101409553 -19847977 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1358 381 22 0 0 chr12 101409889 101409935 -19847595 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1358 1035 250 102 4 chr12 101409936 101410181 -19847349 - B4A SINE B4 -22 270 2 7 1358 22 0 0 0 chr12 101410217 101410239 -19847291 + AT_rich Low_complexity Low_complexity 1 22 0 7 1358 228 35 0 0 chr12 101410723 101410752 -19846778 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1358 227 261 20 102 chr12 101411105 101411203 -19846327 + ID_B1 SINE B4 129 218 -6 7 1358 492 120 27 0 chr12 101411133 101411208 -19846322 + B1_Mus2 SINE Alu 70 146 -1 7 1358 829 167 7 27 chr12 101411422 101411570 -19845960 + B1_Mus2 SINE Alu 2 146 -1 7 1358 347 258 27 102 chr12 101411630 101411777 -19845753 + RSINE1 SINE B4 30 165 0 7 1358 303 229 52 0 chr12 101411844 101411935 -19845595 + PB1D10 SINE Alu 13 114 -13 7 1358 1281 68 68 0 chr12 101411969 101412145 -19845385 - B2_Mm1t SINE B2 -4 189 2 7 1358 467 286 63 0 chr12 101412225 101412414 -19845116 + L1MA5 LINE L1 6093 6293 -7 7 1358 856 108 77 0 chr12 101412424 101412554 -19844976 + B1_Mur2 SINE Alu 9 148 -1 7 1358 721 195 107 0 chr12 101412589 101412758 -19844772 + B2_Mm2 SINE B2 9 195 0 7 1358 321 210 16 31 chr12 101412807 101412871 -19844659 + RSINE1 SINE B4 83 145 -20 7 1358 396 0 0 0 chr12 101412875 101412919 -19844611 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1358 25 90 0 0 chr12 101412919 101412986 -19844544 + AT_rich Low_complexity Low_complexity 1 67 0 7 1358 506 186 50 120 chr12 101412987 101413186 -19844344 + B3A SINE B2 7 191 -4 7 1358 753 306 83 58 chr12 101413615 101413892 -19843638 + B4A SINE B4 1 284 -8 7 1358 23 33 0 0 chr12 101413937 101413967 -19843563 + AT_rich Low_complexity Low_complexity 1 30 0 7 1358 357 205 51 13 chr12 101414003 101414082 -19843448 + ID2 SINE ID 2 83 0 7 1358 529 304 29 6 chr12 101415181 101415353 -19842177 + ORR1E LTR MaLR 1 176 -183 7 1358 202 185 15 30 chr12 101415393 101415408 -19842122 + A-rich Low_complexity Low_complexity 6 21 0 7 1358 608 174 337 12 chr12 101415408 101415571 -19841959 + B3 SINE B2 1 216 0 7 1358 202 185 15 30 chr12 101415571 101415622 -19841908 + A-rich Low_complexity Low_complexity 22 70 0 7 1358 1129 144 84 24 chr12 101416903 101417116 -19840414 + URR1A DNA MER1_type 1 226 0 7 1358 252 0 0 0 chr12 101417222 101417250 -19840280 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1358 323 267 0 0 chr12 101417612 101417687 -19839843 + ID4 SINE ID 1 75 -8 7 1358 519 269 17 0 chr12 101417921 101418040 -19839490 - RSINE1 SINE B4 -42 123 3 7 1358 225 216 18 20 chr12 101418536 101418607 -19838923 + B3A SINE B2 1 73 -122 7 1358 279 0 0 0 chr12 101418945 101418976 -19838554 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 7 1358 200 333 106 26 chr12 101418995 101419146 -19838384 - MIR3 SINE MIR -15 193 31 7 1358 1114 82 0 26 chr12 101420172 101420323 -19837207 - B1_Mus1 SINE Alu 0 148 2 7 1358 263 246 302 42 chr12 101420327 101420338 -19837192 - ID_B1 SINE B4 0 224 146 7 1358 386 248 129 0 chr12 101420338 101420439 -19837091 - PB1D7 SINE Alu -6 114 1 7 1358 234 0 0 0 chr12 101420447 101420473 -19837057 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1358 432 239 170 7 chr12 101420497 101420632 -19836898 - RSINE1 SINE B4 -7 158 2 7 1358 702 126 266 0 chr12 101421032 101421175 -19836355 - B2_Mm2 SINE B2 -14 181 1 7 1358 656 214 7 30 chr12 101421428 101421563 -19835967 + B1_Mur2 SINE Alu 5 136 -13 7 1358 203 384 54 31 chr12 101421958 101422087 -19835443 + L2b LINE L2 3244 3375 0 7 1358 747 256 141 78 chr12 101422320 101422673 -19834857 + MLT1A1 LTR MaLR 11 359 -49 7 1358 315 319 104 0 chr12 101422816 101422951 -19834579 + Charlie4a DNA MER1_type 6 154 -354 7 1358 257 348 73 80 chr12 101423000 101423150 -19834380 + B1F SINE Alu 1 149 0 7 1358 1429 58 20 26 chr12 101423349 101423544 -19833986 - B2_Mm2 SINE B2 0 195 2 7 1358 940 221 9 45 chr12 101423776 101423999 -19833531 + B3 SINE B2 2 216 0 7 1358 216 97 0 0 chr12 101424520 101424551 -19832979 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1358 21 36 0 0 chr12 101425991 101426019 -19831511 + GC_rich Low_complexity Low_complexity 1 28 0 7 1358 359 377 15 0 chr12 101427180 101427310 -19830220 + MIR3 SINE MIR 74 205 -3 7 1358 222 118 0 0 chr12 101427406 101427440 -19830090 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1358 1233 34 7 0 chr12 101427440 101427586 -19829944 - B1_Mm SINE Alu 0 147 1 7 1358 1371 74 11 0 chr12 101428179 101428355 -19829175 + B2_Mm1t SINE B2 2 179 -14 7 1358 351 101 355 18 chr12 101428421 101428531 -19828999 + B2_Mm2 SINE B2 47 193 -2 8 1358 1146 64 0 0 chr12 101428533 101428673 -19828857 + B1_Mm SINE Alu 1 140 -7 8 1358 299 25 25 0 chr12 101428677 101428717 -19828813 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 1358 31 0 0 0 chr12 101429401 101429432 -19828098 + AT_rich Low_complexity Low_complexity 1 31 0 8 1358 352 273 28 0 chr12 101429544 101429630 -19827900 + PB1D10 SINE Alu 8 96 -21 8 1358 202 279 0 0 chr12 101429642 101429685 -19827845 + polypurine Low_complexity Low_complexity 5 47 0 8 1358 324 0 0 0 chr12 101429696 101429732 -19827798 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1358 275 306 183 23 chr12 101429732 101429855 -19827675 + ID_B1 SINE B4 16 155 -69 8 1358 2292 72 3 61 chr12 101431461 101431803 -19825727 + ORR1A2 LTR MaLR 6 327 0 8 1358 499 276 176 0 chr12 101432088 101432258 -19825272 + MER3 DNA MER1_type 10 209 0 8 1358 351 0 0 0 chr12 101432341 101432380 -19825150 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1358 279 295 0 102 chr12 101432393 101432491 -19825039 - B4A SINE B4 -5 287 200 8 1358 2022 128 5 120 chr12 101432499 101432840 -19824690 + ORR1B1 LTR MaLR 41 350 -44 8 1358 466 15 106 0 chr12 101432840 101432906 -19824624 + L1Md_F3 LINE L1 6498 6570 -14 8 1358 2022 128 5 120 chr12 101432906 101432963 -19824567 + ORR1B1 LTR MaLR 351 393 -1 8 1358 723 251 10 77 chr12 101432963 101433168 -19824362 - B4A SINE B4 -94 198 8 8 1358 485 272 65 22 chr12 101433617 101433756 -19823774 + B1F2 SINE Alu 5 149 0 8 1358 1339 243 90 45 chr12 101433920 101434321 -19823209 - MTD LTR MaLR 0 419 1 8 1358 680 282 9 72 chr12 101434580 101434802 -19822728 + MTC-int LTR MaLR 47 254 -1004 8 1358 593 188 105 28 chr12 101434804 101434977 -19822553 + B3 SINE B2 2 187 -8 8 1358 1115 226 7 37 chr12 101434987 101435258 -19822272 + MTC-int LTR MaLR 312 574 -684 8 1358 200 356 82 0 chr12 101435613 101435711 -19821819 + MIR SINE MIR 53 164 -112 8 1358 26 30 0 0 chr12 101437593 101437626 -19819904 + GC_rich Low_complexity Low_complexity 1 33 0 8 1358 24 67 0 0 chr12 101438287 101438332 -19819198 + GC_rich Low_complexity Low_complexity 1 45 0 8 1358 222 286 10 39 chr12 101438496 101438598 -19818932 + G-rich Low_complexity Low_complexity 1 99 0 8 1358 22 56 0 0 chr12 101438605 101438641 -19818889 + GC_rich Low_complexity Low_complexity 1 36 0 8 1358 266 291 124 19 chr12 101440191 101440296 -19817234 + AmnSINE1 SINE SINE 117 232 -343 8 1358 457 229 64 9 chr12 101440990 101441100 -19816430 - B1_Mur2 SINE Alu 0 149 34 8 1358 628 315 19 48 chr12 101441128 101441338 -19816192 + B3 SINE B2 13 216 0 8 1358 180 186 161 48 chr12 101442021 101442083 -19815447 + MIRm SINE MIR 99 167 -109 8 1358 280 219 54 14 chr12 101443255 101443329 -19814201 + ID4_ SINE ID 6 82 -1 8 1358 235 266 78 0 chr12 101443276 101443340 -19814190 + ID_B1 SINE B4 28 96 -128 8 1358 240 100 0 0 chr12 101447085 101447125 -19810405 + (TA)n Simple_repeat Simple_repeat 1 40 0 8 1358 406 198 103 10 chr12 101448274 101448371 -19809159 + B1_Mur1 SINE Alu 43 148 -1 8 1358 659 284 6 71 chr12 101448410 101448592 -19808938 + ID_B1 SINE B4 3 172 -52 8 169 387 0 0 0 chr12 101449695 101449738 -19807792 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1359 427 307 48 35 chr12 101449742 101449887 -19807643 - RSINE1 SINE B4 -17 148 2 8 1359 411 289 109 47 chr12 101450080 101450291 -19807239 + ID_B1 SINE B4 1 224 0 8 1359 408 210 61 12 chr12 101450305 101450387 -19807143 + B3A SINE B2 4 89 -109 8 1359 2386 151 97 12 chr12 101450428 101450911 -19806619 - RLTR28 LTR ERVL 0 524 1 8 1359 752 147 0 0 chr12 101450957 101451073 -19806457 + B1_Mur4 SINE Alu 35 150 0 8 1359 608 265 40 85 chr12 101451140 101451317 -19806213 + B4A SINE B4 42 210 -82 8 1359 414 0 0 0 chr12 101451317 101451363 -19806167 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1359 347 292 80 40 chr12 101451366 101451516 -19806014 + RSINE1 SINE B4 2 157 -8 8 1359 517 326 8 0 chr12 101451707 101451836 -19805694 + ID_B1 SINE B4 82 211 -13 8 1359 1597 229 79 11 chr12 101451950 101452303 -19805227 - MTE2b LTR MaLR 0 379 3 8 1359 219 362 127 7 chr12 101452365 101452507 -19805023 + MIRb SINE MIR 40 198 -70 8 1359 240 286 21 21 chr12 101453067 101453160 -19804370 - L3 LINE CR1 -3458 1031 939 8 1359 1504 199 85 21 chr12 101453454 101453782 -19803748 + ORR1D1 LTR MaLR 1 349 -25 8 1359 1225 46 0 7 chr12 101453779 101453933 -19803597 + MTB LTR MaLR 248 400 0 8 1359 323 148 0 4 chr12 101453933 101453995 -19803535 + ORR1D1 LTR MaLR 347 421 0 8 1359 4960 211 70 62 chr12 101453998 101455223 -19802307 + ORR1D1-int LTR MaLR 136 1370 0 8 1359 675 167 181 25 chr12 101455224 101455384 -19802146 + ORR1D1 LTR MaLR 5 189 -185 8 1359 2195 137 28 8 chr12 101455387 101455747 -19801783 + RLTR31A_Mm LTR ERVK 1 367 -217 8 1359 373 171 0 54 chr12 101455839 101455913 -19801617 + RLTR31A_Mm LTR ERVK 515 584 0 8 1359 519 17 0 0 chr12 101455914 101455974 -19801556 + (TC)n Simple_repeat Simple_repeat 2 61 0 8 1359 243 0 0 0 chr12 101455975 101456002 -19801528 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 8 1359 999 224 19 10 chr12 101456016 101456223 -19801307 + ORR1D1 LTR MaLR 166 374 0 8 1359 1015 96 86 101 chr12 101456447 101456645 -19800885 + B2_Mm2 SINE B2 1 195 0 8 1359 645 283 52 124 chr12 101456712 101457228 -19800302 + L1MB2 LINE L1 5573 6051 -120 8 1359 645 198 9 20 chr12 101457246 101457386 -19800144 - B1_Mus1 SINE Alu -14 135 1 8 1359 2183 259 30 64 chr12 101457415 101458037 -19799493 - RCHARR1 DNA MER1_type -277 697 97 8 1359 289 240 0 165 chr12 101458057 101458172 -19799358 - RCHARR1 DNA MER1_type -835 139 44 8 1359 315 319 16 56 chr12 101458205 101458331 -19799199 + MLT1H1 LTR MaLR 434 554 -1 8 1359 670 187 141 48 chr12 101458399 101458551 -19798979 + B3 SINE B2 1 171 -27 8 1359 195 114 0 0 chr12 101458551 101458586 -19798944 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 8 1359 622 234 152 39 chr12 101458586 101458611 -19798919 + B3A SINE B2 172 197 -1 8 1359 428 119 21 106 chr12 101458636 101458730 -19798800 + B1_Mur4 SINE Alu 2 87 -33 8 1359 466 294 99 16 chr12 101458731 101458973 -19798557 - L1MB7 LINE L1 -62 6122 5861 8 1359 195 231 59 44 chr12 101459285 101459353 -19798177 - L2c LINE L2 -49 3338 3270 8 1359 1080 64 28 14 chr12 101459391 101459534 -19797996 - B1_Mus2 SINE Alu -1 146 2 8 1359 250 114 0 0 chr12 101459563 101459598 -19797932 + L1M4 LINE L1 5854 5888 -290 8 1359 561 30 0 0 chr12 101459602 101459669 -19797861 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1359 200 217 0 21 chr12 101460253 101460300 -19797230 + CT-rich Low_complexity Low_complexity 2 47 0 8 1359 239 226 71 87 chr12 101460527 101460653 -19796877 + ORR1C2 LTR MaLR 82 205 -179 8 1359 444 263 179 60 chr12 101460831 101461017 -19796513 + MER2 DNA MER2_type 92 305 -40 8 1359 318 106 0 0 chr12 101461017 101461064 -19796466 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1359 444 263 179 60 chr12 101461064 101461095 -19796435 + MER2 DNA MER2_type 306 335 -10 8 1359 459 237 53 36 chr12 101461286 101461412 -19796118 - B1_Mur1 SINE Alu 0 149 2 8 1359 319 252 81 36 chr12 101461501 101461612 -19795918 - MIRb SINE MIR -66 202 87 8 1359 27 29 0 0 chr12 101463341 101463375 -19794155 + AT_rich Low_complexity Low_complexity 1 34 0 8 1359 200 266 89 0 chr12 101463379 101463458 -19794072 - MIR SINE MIR -15 247 162 8 1359 648 252 0 34 chr12 101464001 101464149 -19793381 + RSINE1 SINE B4 3 145 -20 8 1359 192 125 0 0 chr12 101464185 101464217 -19793313 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1359 405 102 0 0 chr12 101464563 101464622 -19792908 + (CCTG)n Simple_repeat Simple_repeat 1 59 0 8 1359 648 295 34 99 chr12 101465150 101465220 -19792310 - B4 SINE B4 -18 274 230 8 1359 660 267 20 64 chr12 101465220 101465424 -19792106 - B3A SINE B2 -3 195 1 8 1359 648 295 34 99 chr12 101465424 101465646 -19791884 - B4 SINE B4 -63 229 1 8 1359 209 33 0 32 chr12 101465779 101465810 -19791720 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 8 1359 327 294 163 0 chr12 101465818 101465971 -19791559 + MER45A DNA Tip100 1 178 0 8 1359 197 33 33 0 chr12 101466986 101467016 -19790514 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 8 1359 672 274 124 0 chr12 101467768 101467969 -19789561 + B4 SINE B4 3 228 -64 8 1359 788 250 37 33 chr12 101468109 101468324 -19789206 + B3 SINE B2 1 216 0 8 1359 23 0 0 0 chr12 101468329 101468352 -19789178 + AT_rich Low_complexity Low_complexity 1 23 0 8 1359 996 148 0 0 chr12 101468588 101468737 -19788793 - B1_Mur3 SINE Alu 0 149 1 8 1359 248 314 1 120 chr12 101468783 101468915 -19788615 - AluG_3 SINE Alu -89 222 3 8 1359 357 219 0 14 chr12 101469401 101469475 -19788055 - MTEb LTR MaLR -20 359 287 8 1359 423 83 0 0 chr12 101469983 101470043 -19787487 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1359 291 200 16 16 chr12 101470302 101470363 -19787167 - B4 SINE B4 -230 62 2 8 1359 755 156 109 0 chr12 101470415 101470543 -19786987 - B1_Mur4 SINE Alu -8 142 1 8 1359 925 304 34 34 chr12 101471038 101471094 -19786436 + Lx8 LINE L1 7095 7150 -323 8 1359 384 22 0 0 chr12 101471094 101471139 -19786391 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1359 925 304 34 34 chr12 101471139 101471440 -19786090 + Lx8 LINE L1 7151 7451 -22 8 1359 371 292 98 15 chr12 101472216 101472348 -19785182 - MIR SINE MIR -106 162 20 8 1359 21 0 0 0 chr12 101472460 101472481 -19785049 + AT_rich Low_complexity Low_complexity 1 21 0 8 1359 323 262 69 57 chr12 101473460 101473659 -19783871 - MIRm SINE MIR -66 202 1 8 1359 221 283 17 0 chr12 101473673 101473733 -19783797 + C-rich Low_complexity Low_complexity 2 62 0 8 1359 468 300 124 59 chr12 101474081 101474283 -19783247 - MER2 DNA MER2_type -15 330 116 8 1359 303 250 195 17 chr12 101474296 101474414 -19783116 - MER2 DNA MER2_type -155 190 52 8 1359 211 292 104 38 chr12 101474450 101474595 -19782935 + MIRb SINE MIR 3 155 -113 8 1359 2806 139 23 45 chr12 101474776 101475368 -19782162 - RLTR20B2 LTR ERVK 0 577 15 8 1359 605 189 45 9 chr12 101475404 101475516 -19782014 - PB1D10 SINE Alu 0 117 2 8 1359 291 316 118 45 chr12 101475663 101475866 -19781664 + MLT1H LTR MaLR 271 547 -2 8 1359 709 304 98 70 chr12 101475868 101476150 -19781380 + MLT1H-int LTR MaLR 1 292 -1117 8 1359 2201 120 8 81 chr12 101476150 101476532 -19780998 - ORR1B1 LTR MaLR 0 394 41 9 1359 1143 90 30 6 chr12 101476780 101476947 -19780583 + B2_Mm2 SINE B2 1 171 -24 9 1359 1236 92 40 11 chr12 101476957 101477132 -19780398 + B2_Mm2 SINE B2 1 180 -15 9 1359 286 211 0 0 chr12 101477558 101477615 -19779915 + MLT1H LTR MaLR 32 88 -461 8 1359 360 242 89 65 chr12 101477742 101477910 -19779620 + MLT1H LTR MaLR 253 424 -125 8 1359 213 175 0 0 chr12 101478524 101478564 -19778966 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1359 189 246 51 34 chr12 101479719 101479778 -19777752 + MIRm SINE MIR 125 184 -92 9 1359 831 146 66 0 chr12 101479934 101480071 -19777459 - B1_Mus2 SINE Alu -1 146 1 9 1359 207 105 26 0 chr12 101480103 101480141 -19777389 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 9 1359 1123 7 15 0 chr12 101480413 101480549 -19776981 + (TC)n Simple_repeat Simple_repeat 1 138 0 9 1359 293 0 27 0 chr12 101481025 101481062 -19776468 + (TTG)n Simple_repeat Simple_repeat 2 39 0 9 1359 1191 20 7 40 chr12 101481067 101481219 -19776311 - B1_Mus1 SINE Alu 0 148 2 9 1359 973 143 0 0 chr12 101482233 101482373 -19775157 - B1_Mur3 SINE Alu -7 142 3 9 1359 536 248 97 28 chr12 101483498 101483643 -19773887 + ID_B1 SINE B4 5 159 -65 9 1359 316 326 72 49 chr12 101483644 101483950 -19773580 + L1MC5 LINE L1 7470 7782 -179 9 1359 297 109 0 0 chr12 101484166 101484212 -19773318 + (T)n Simple_repeat Simple_repeat 1 46 0 9 1359 1238 47 0 0 chr12 101484212 101484360 -19773170 - B1_Mus1 SINE Alu 0 148 1 9 1359 342 308 39 0 chr12 101484360 101484490 -19773040 + L1MA5 LINE L1 6166 6300 0 9 1359 424 235 48 10 chr12 101484525 101484628 -19772902 + PB1D7 SINE Alu 13 119 -1 9 1359 786 236 7 0 chr12 101484631 101484771 -19772759 + RSINE1 SINE B4 3 143 -22 9 1359 351 0 0 0 chr12 101484776 101484815 -19772715 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1359 400 253 239 6 chr12 101485479 101485642 -19771888 + MIRb SINE MIR 68 268 0 9 1359 463 321 51 142 chr12 101485833 101486228 -19771302 + MLT1J LTR MaLR 102 460 -52 9 1359 945 214 57 0 chr12 101486548 101486758 -19770772 - URR1A DNA MER1_type 0 226 5 9 1359 384 93 40 0 chr12 101486834 101486909 -19770621 + (GA)n Simple_repeat Simple_repeat 2 79 0 9 1359 267 31 0 0 chr12 101487874 101487906 -19769624 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 1359 912 73 0 155 chr12 101487906 101488067 -19769463 - B1_Mur3 SINE Alu -13 136 1 9 1359 1395 225 124 29 chr12 101488160 101488540 -19768990 - MTD LTR MaLR -2 417 2 9 1359 473 227 18 18 chr12 101488552 101488664 -19768866 - MER2 DNA MER2_type -38 307 196 9 1359 462 211 11 22 chr12 101488665 101488757 -19768773 - RCHARR1 DNA MER1_type -1 973 883 9 1359 287 333 109 22 chr12 101488759 101488897 -19768633 + RSINE1 SINE B4 4 153 -12 9 1359 236 200 120 0 chr12 101488894 101488944 -19768586 - B3A SINE B2 -118 80 25 9 1359 2093 54 0 0 chr12 101488954 101489212 -19768318 + L1Md_A LINE L1 6325 6582 0 9 1359 2334 273 17 62 chr12 101489249 101489271 -19768259 - RCHARR1 DNA MER1_type -215 759 738 9 1359 1121 133 159 0 chr12 101489271 101489466 -19768064 + URR1A DNA MER1_type 1 226 0 9 1359 2334 273 17 62 chr12 101489466 101490147 -19767383 - RCHARR1 DNA MER1_type -237 737 89 9 1359 237 132 0 0 chr12 101490155 101490193 -19767337 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1359 634 227 126 17 chr12 101490285 101490460 -19767070 - MER2 DNA MER2_type -142 203 10 9 1359 250 319 170 0 chr12 101490646 101490787 -19766743 - MIRb SINE MIR -53 215 51 9 1359 378 219 115 0 chr12 101491176 101491272 -19766258 + MLT1A0 LTR MaLR 1 107 -258 9 1359 288 0 0 0 chr12 101491280 101491312 -19766218 + (TC)n Simple_repeat Simple_repeat 1 32 0 9 1359 255 122 0 0 chr12 101491312 101491360 -19766170 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1359 302 298 19 19 chr12 101491404 101491510 -19766020 + MLT1A0 LTR MaLR 302 407 -1 9 1359 708 98 0 0 chr12 101492406 101492508 -19765022 + (GGA)n Simple_repeat Simple_repeat 3 104 0 9 1359 393 310 214 0 chr12 101492688 101492861 -19764669 - MIR SINE MIR -26 236 27 9 1359 222 351 13 13 chr12 101492910 101492988 -19764542 - L2b LINE L2 0 3375 3298 9 1359 639 0 0 0 chr12 101493583 101493654 -19763876 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 9 1359 236 169 102 0 chr12 101494308 101494367 -19763163 - Charlie7a DNA MER1_type -1 271 207 9 1359 663 254 0 7 chr12 101494504 101494639 -19762891 - ORR1D2 LTR MaLR -235 135 2 9 1359 291 28 0 0 chr12 101494664 101494700 -19762830 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1359 3365 33 18 0 chr12 101494960 101495349 -19762181 + MTA_Mm LTR MaLR 1 396 0 9 1359 1028 223 5 14 chr12 101495563 101495781 -19761749 + B3 SINE B2 1 216 0 9 1359 1921 170 80 3 chr12 101496613 101496962 -19760568 - MTC LTR MaLR -45 376 1 9 1359 252 234 109 0 chr12 101497248 101497312 -19760218 + tRNA-Gly-GGA tRNA tRNA 1 71 -4 9 1359 2703 141 33 33 chr12 101497345 101497829 -19759701 + RMER20A LTR ERVK 33 516 0 9 1359 428 264 24 16 chr12 101497832 101497955 -19759575 + B3 SINE B2 16 139 -77 9 1359 191 250 0 71 chr12 101498953 101499009 -19758521 + L4 LINE RTE 997 1048 -981 9 1359 294 299 34 20 chr12 101499279 101499426 -19758104 + (TCCA)n Simple_repeat Simple_repeat 1 149 0 9 1359 1023 226 39 11 chr12 101499618 101499904 -19757626 + L1MC4 LINE L1 7621 7914 -128 9 1359 456 35 0 0 chr12 101499926 101499984 -19757546 + (GA)n Simple_repeat Simple_repeat 1 58 0 9 1359 643 295 26 0 chr12 101501917 101502110 -19755420 - MER58A DNA MER1_type -1 223 26 1 1359 1054 275 28 35 chr12 101502640 101502926 -19754604 + MTE2b LTR MaLR 2 285 -94 2 1359 251 349 56 85 chr12 101503800 101503965 -19753565 + MIR SINE MIR 92 257 -11 3 1359 450 0 0 0 chr12 101504070 101504120 -19753410 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1359 221 262 88 0 chr12 101504430 101504510 -19753020 - MIR3 SINE MIR -31 177 91 5 1359 450 0 0 0 chr12 101504536 101504586 -19752944 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1359 879 279 104 0 chr12 101504754 101505052 -19752478 + MLT1A0 LTR MaLR 2 330 -35 7 1359 240 376 101 20 chr12 101505950 101506197 -19751333 - L2b LINE L2 -6 3369 3103 8 1359 216 0 0 0 chr12 101506836 101506860 -19750670 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 1359 838 199 61 52 chr12 101507126 101507256 -19750274 + B3 SINE B2 1 132 -84 1 1359 4832 36 5 0 chr12 101507256 101507817 -19749713 - L1Md_F2 LINE L1 0 6582 6019 1 1359 838 199 61 52 chr12 101507817 101507898 -19749632 + B3 SINE B2 133 214 -2 1 1359 482 312 72 38 chr12 101507902 101508280 -19749250 - L2a LINE L2 -264 3162 2757 1 1359 362 183 97 0 chr12 101508645 101508738 -19748792 - L2a LINE L2 -838 2581 2480 1 1359 707 310 26 63 chr12 101508738 101509041 -19748489 + B4 SINE B4 1 292 0 1 1359 5276 147 20 30 chr12 101509065 101509978 -19747552 - RMER13B LTR ERVK 0 908 5 1 1359 480 99 0 0 chr12 101509979 101510050 -19747480 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1359 342 280 98 71 chr12 101510773 101511068 -19746462 - B4 SINE B4 -23 269 1 1 1359 188 306 0 0 chr12 101511459 101511508 -19746022 + MIR SINE MIR 70 118 -90 1 1359 1038 298 18 7 chr12 101511690 101511974 -19745556 - B4 SINE B4 0 292 6 1 1359 272 310 61 9 chr12 101512002 101512116 -19745414 + PB1D7 SINE Alu 1 120 0 1 1359 1029 140 0 0 chr12 101513169 101513407 -19744123 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 2 1359 225 94 0 0 chr12 101513758 101513790 -19743740 + (GGA)n Simple_repeat Simple_repeat 3 34 0 2 1359 658 34 0 22 chr12 101513857 101513948 -19743582 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 2 1359 250 64 41 41 chr12 101514951 101515000 -19742530 + (CATG)n Simple_repeat Simple_repeat 3 51 0 2 1359 246 105 0 0 chr12 101515112 101515150 -19742380 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1359 562 339 67 5 chr12 101515674 101515867 -19741663 - MER58A DNA MER1_type -19 205 1 2 1359 196 245 102 0 chr12 101516107 101516156 -19741374 + L2a LINE L2 3359 3412 -14 2 1359 264 231 46 0 chr12 101516373 101516438 -19741092 + MLT1G3 LTR MaLR 309 376 -219 2 1359 267 93 0 0 chr12 101516929 101516972 -19740558 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1359 221 203 250 0 chr12 101517320 101517384 -19740146 + MIRb SINE MIR 30 109 -159 2 1359 191 286 148 30 chr12 101517850 101517951 -19739579 + MIRc SINE MIR 55 167 -101 3 1359 548 238 32 0 chr12 101518528 101518654 -19738876 - ID_B1 SINE B4 0 224 95 3 1359 256 220 19 29 chr12 101518744 101518825 -19738705 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 1359 191 36 36 0 chr12 101518825 101518853 -19738677 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1359 256 220 19 29 chr12 101518853 101518874 -19738656 + (TA)n Simple_repeat Simple_repeat 1 22 0 3 1359 857 143 7 0 chr12 101518874 101519014 -19738516 - B1_Mus1 SINE Alu -2 146 6 3 1359 185 278 125 0 chr12 101519064 101519136 -19738394 - MIRc SINE MIR -143 125 45 3 1359 215 146 88 35 chr12 101520914 101520971 -19736559 - MIRb SINE MIR -93 175 116 3 1359 844 305 14 31 chr12 101521403 101521691 -19735839 + B4A SINE B4 9 291 -1 3 1359 228 67 0 0 chr12 101521708 101521738 -19735792 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1359 719 141 14 36 chr12 101521742 101521882 -19735648 + B1_Mus1 SINE Alu 12 148 0 4 1359 309 216 40 0 chr12 101521981 101522055 -19735475 + ID SINE ID 2 78 -146 4 1359 230 344 22 0 chr12 101522055 101522071 -19735459 + BC1_Mm scRNA scRNA 2 93 -59 4 1359 754 214 7 7 chr12 101522699 101522845 -19734685 - B1_Mur1 SINE Alu -2 147 2 4 1359 330 257 14 0 chr12 101522935 101523009 -19734521 + B4A SINE B4 1 75 -217 4 1359 522 0 0 0 chr12 101523104 101523162 -19734368 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1359 354 252 42 133 chr12 101523844 101523868 -19733662 - MER20 DNA MER1_type -57 162 142 4 1359 1378 162 9 5 chr12 101523868 101524091 -19733439 + URR1B DNA MER1_type 2 225 0 4 1359 354 252 42 133 chr12 101524091 101524231 -19733299 - MER20 DNA MER1_type -78 141 13 4 1359 703 292 67 29 chr12 101524614 101524822 -19732708 - ID_B1 SINE B4 -8 216 1 4 1359 230 340 90 21 chr12 101525882 101526026 -19731504 + MLT1J LTR MaLR 84 237 -275 4 1359 195 139 0 0 chr12 101526702 101526738 -19730792 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1359 281 331 11 53 chr12 101526788 101526976 -19730554 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1359 318 87 0 0 chr12 101527256 101527302 -19730228 + (CAG)n Simple_repeat Simple_repeat 1 46 0 5 1359 315 0 0 0 chr12 101527431 101527466 -19730064 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1359 414 0 0 0 chr12 101529823 101529869 -19727661 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1359 850 131 15 0 chr12 101529984 101530114 -19727416 - B1_Mur2 SINE Alu -1 148 17 5 1359 21 0 0 0 chr12 101530163 101530184 -19727346 + AT_rich Low_complexity Low_complexity 1 21 0 5 1359 1595 133 0 27 chr12 101530186 101530448 -19727082 - Lx3A LINE L1 0 6981 6727 5 1359 744 286 111 11 chr12 101530837 101531099 -19726431 - B4 SINE B4 -4 288 1 5 1359 699 217 136 31 chr12 101532748 101532910 -19724620 + B3A SINE B2 2 180 -18 5 1359 618 367 55 15 chr12 101532952 101533478 -19724052 - L1ME2 LINE L1 -5 6159 5613 6 1359 189 0 0 0 chr12 101533483 101533504 -19724026 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1359 936 124 0 27 chr12 101533510 101533659 -19723871 - B1_Mur4 SINE Alu 0 150 6 6 1359 582 234 26 93 chr12 101533811 101533962 -19723568 - RSINE1 SINE B4 0 165 25 6 1359 193 250 62 0 chr12 101534194 101534242 -19723288 + MIRm SINE MIR 118 168 -108 6 1359 349 294 103 83 chr12 101534453 101534705 -19722825 + MLT1A1 LTR MaLR 1 257 -151 6 1359 289 351 82 43 chr12 101534733 101534989 -19722541 + MLT1A1 LTR MaLR 230 495 -10 6 1359 286 329 119 90 chr12 101535073 101535451 -19722079 - ORR1E LTR MaLR -15 393 5 6 1359 24 0 0 0 chr12 101535622 101535646 -19721884 + AT_rich Low_complexity Low_complexity 1 24 0 6 1359 759 127 35 0 chr12 101535649 101535822 -19721708 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 6 1359 444 274 35 9 chr12 101535824 101535938 -19721592 - RSINE1 SINE B4 -6 159 43 6 1359 339 96 0 0 chr12 101537836 101537888 -19719642 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1359 207 0 0 0 chr12 101538723 101538746 -19718784 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 7 1359 236 228 110 37 chr12 101540200 101540282 -19717248 + PB1D10 SINE Alu 29 116 -1 7 1359 269 247 70 30 chr12 101540782 101540882 -19716648 - B1_Mm SINE Alu -6 141 38 7 1359 871 254 14 14 chr12 101541263 101541475 -19716055 - B3 SINE B2 0 216 5 7 1359 1375 173 122 18 chr12 101542038 101542429 -19715101 + RLTR20B3 LTR ERVK 1 462 -115 7 1359 407 87 0 14 chr12 101542429 101542499 -19715031 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 7 1359 608 136 182 8 chr12 101542499 101542539 -19714991 + RLTR20B3 LTR ERVK 463 522 -55 7 1359 267 79 0 0 chr12 101542851 101542889 -19714641 + (GGA)n Simple_repeat Simple_repeat 1 38 0 7 1359 393 22 0 0 chr12 101545649 101545695 -19711835 + (TGG)n Simple_repeat Simple_repeat 2 47 0 7 1359 360 0 0 0 chr12 101545695 101545735 -19711795 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1359 201 277 22 67 chr12 101547143 101547232 -19710298 - L3 LINE CR1 -243 4246 4162 8 1359 236 149 21 0 chr12 101547249 101547296 -19710234 + CT-rich Low_complexity Low_complexity 4 51 0 8 1359 651 298 91 5 chr12 101550339 101550558 -19706972 - ORR1E LTR MaLR -121 238 1 8 1359 186 103 0 0 chr12 101552074 101552103 -19705427 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 8 1359 321 272 37 0 chr12 101553203 101553284 -19704246 - MER63B DNA AcHobo -26 410 327 8 1359 573 88 0 0 chr12 101554094 101554174 -19703356 + (TG)n Simple_repeat Simple_repeat 2 81 0 8 1359 232 320 58 26 chr12 101554328 101554454 -19703076 - MIR SINE MIR -94 174 42 8 1359 477 245 111 65 chr12 101555119 101555272 -19702258 - RSINE1 SINE B4 0 165 6 8 1359 234 193 53 0 chr12 101557014 101557071 -19700459 + (CAAAC)n Simple_repeat Simple_repeat 2 61 0 8 1359 702 35 0 0 chr12 101560958 101561043 -19696487 + (TTTTC)n Simple_repeat Simple_repeat 3 87 0 8 1359 1102 38 38 0 chr12 101561043 101561175 -19696355 - B1_Mus1 SINE Alu -11 137 1 9 1359 413 255 68 29 chr12 101561264 101561412 -19696118 - MIR SINE MIR -37 171 21 9 1359 180 0 0 0 chr12 101565311 101565331 -19692199 + (C)n Simple_repeat Simple_repeat 1 20 0 9 1359 730 271 96 22 chr12 101565685 101565957 -19691573 + B4A SINE B4 1 292 0 9 1359 201 346 12 25 chr12 101566968 101567048 -19690482 + L2b LINE L2 3258 3336 -39 9 1359 188 179 52 35 chr12 101567726 101567784 -19689746 - L2a LINE L2 -395 3031 2973 9 1359 846 278 67 57 chr12 101568078 101568360 -19689170 + B4 SINE B4 2 286 -6 9 1359 351 0 0 0 chr12 101568375 101568414 -19689116 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1359 260 391 89 0 chr12 101568506 101568708 -19688822 + L1MC LINE L1 5437 5656 -2226 9 1359 351 0 0 0 chr12 101569657 101569696 -19687834 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1359 207 0 0 0 chr12 101570260 101570283 -19687247 + (CCCTG)n Simple_repeat Simple_repeat 1 23 0 1 1359 203 231 75 30 chr12 101570375 101570442 -19687088 - MIR SINE MIR -92 170 101 1 1359 190 250 66 94 chr12 101571639 101571745 -19685785 - L3 LINE CR1 -2767 1722 1620 1 1359 987 181 0 0 chr12 101571845 101571994 -19685536 - B1_Mur3 SINE Alu 0 149 1 1 1359 423 38 0 0 chr12 101572208 101572261 -19685269 + (TTA)n Simple_repeat Simple_repeat 3 55 0 1 1359 560 223 45 0 chr12 101572269 101572381 -19685149 + PB1D10 SINE Alu 1 117 0 1 1359 360 64 0 0 chr12 101572787 101572834 -19684696 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1359 353 250 79 10 chr12 101572859 101572960 -19684570 - B4 SINE B4 0 292 185 1 1359 426 262 101 24 chr12 101572966 101573134 -19684396 - Charlie1a DNA MER1_type -1 1454 1274 1 1359 309 315 26 33 chr12 101573402 101573545 -19683985 - MIRb SINE MIR -39 169 39 1 1359 24 32 0 0 chr12 101577180 101577211 -19680319 + AT_rich Low_complexity Low_complexity 1 31 0 1 1359 26 30 0 0 chr12 101577307 101577340 -19680190 + AT_rich Low_complexity Low_complexity 1 33 0 1 1359 210 160 0 0 chr12 101578180 101578230 -19679300 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 1 1359 483 18 0 0 chr12 101578232 101578288 -19679242 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1359 1185 42 0 34 chr12 101579533 101579682 -19677848 + B1_Mm SINE Alu 4 147 0 1 1359 203 0 37 0 chr12 101579684 101579711 -19677819 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1360 788 167 36 14 chr12 101581212 101581352 -19676178 - B1_Mur1 SINE Alu 0 149 7 1 1360 313 238 9 82 chr12 101581254 101581364 -19676166 - MT2B LTR ERVL -338 263 162 1 1360 435 316 63 0 chr12 101581391 101581549 -19675981 - B4A SINE B4 -123 169 2 1 1360 225 231 0 71 chr12 101582205 101582275 -19675255 + A-rich Low_complexity Low_complexity 1 65 0 1 1360 306 0 0 0 chr12 101585352 101585386 -19672144 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1360 422 255 58 45 chr12 101586470 101586626 -19670904 + RSINE1 SINE B4 3 160 -5 1 1360 219 259 122 12 chr12 101588660 101588742 -19668788 + MIRm SINE MIR 4 94 -182 1 1360 1369 141 42 56 chr12 101588816 101589101 -19668429 + ORR1C1-int LTR MaLR 1090 1370 0 1 1360 1667 176 12 82 chr12 101589101 101589442 -19668088 + ORR1C1 LTR MaLR 1 317 -61 1 1360 1140 124 0 0 chr12 101589784 101589962 -19667568 + (GAA)n Simple_repeat Simple_repeat 2 179 0 1 1360 243 0 0 0 chr12 101589962 101589989 -19667541 + (GGA)n Simple_repeat Simple_repeat 1 27 0 1 1360 226 380 83 18 chr12 101590006 101590175 -19667355 + MIRc SINE MIR 2 181 -87 1 1360 498 239 53 23 chr12 101591965 101592098 -19665432 - B1F SINE Alu -1 148 12 1 1360 611 302 63 43 chr12 101592568 101592869 -19664661 + LTR37A LTR ERV1 119 425 -1 1 1360 2340 193 49 59 chr12 101593441 101594052 -19663478 - Lx7 LINE L1 0 7696 7092 1 1360 328 330 110 45 chr12 101594347 101594547 -19662983 + ID_B1 SINE B4 7 219 -5 1 1360 383 252 174 0 chr12 101594435 101594550 -19662980 + B1F SINE Alu 13 147 -2 1 1360 1233 34 0 33 chr12 101594554 101594706 -19662824 + B1_Mus2 SINE Alu 1 147 0 1 1360 189 0 0 0 chr12 101594706 101594727 -19662803 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1360 829 226 47 5 chr12 101597361 101597552 -19659978 + MTEb LTR MaLR 3 201 -178 1 1360 206 346 9 46 chr12 101597837 101597946 -19659584 + L2b LINE L2 3034 3138 -237 1 1360 439 272 171 68 chr12 101598965 101599229 -19658301 + B4 SINE B4 2 292 0 1 1360 294 73 0 0 chr12 101600034 101600075 -19657455 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1360 237 312 68 55 chr12 101600447 101600610 -19656920 + MER5A1 DNA MER1_type 1 165 -1 1 1360 288 276 0 0 chr12 101600762 101600820 -19656710 - PB1 SINE Alu -3 124 67 1 1360 209 161 0 0 chr12 101602623 101602654 -19654876 + (CAG)n Simple_repeat Simple_repeat 2 32 0 1 1360 629 232 54 49 chr12 101603248 101603378 -19654152 - L1MB3 LINE L1 0 6183 6054 1 1360 743 296 96 82 chr12 101603378 101603567 -19653963 - B4 SINE B4 -8 284 87 1 1360 1119 191 60 0 chr12 101603567 101603766 -19653764 - B3 SINE B2 -5 211 1 1 1360 743 296 96 82 chr12 101603766 101603856 -19653674 - B4 SINE B4 -206 86 1 1 1360 629 232 54 49 chr12 101603856 101603929 -19653601 - L1MB3 LINE L1 -130 6053 5979 1 1360 183 288 27 27 chr12 101604172 101604247 -19653283 + MIR SINE MIR 113 187 -75 1 1360 1115 225 14 0 chr12 101604269 101604482 -19653048 - B3 SINE B2 0 216 1 1 1360 698 220 92 51 chr12 101605282 101605478 -19652052 + ID_B1 SINE B4 7 210 -14 1 1360 308 330 94 64 chr12 101605559 101605815 -19651715 + L1M5 LINE L1 4845 5126 -1020 1 1360 603 216 56 35 chr12 101605815 101605959 -19651571 + B1F1 SINE Alu 1 147 -2 1 1360 308 330 94 64 chr12 101605959 101606018 -19651512 + L1M5 LINE L1 5127 5177 -969 1 1360 342 0 0 0 chr12 101606018 101606056 -19651474 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1360 308 330 94 64 chr12 101606056 101606270 -19651260 + L1M5 LINE L1 5178 5391 -755 1 1360 822 164 28 28 chr12 101606437 101606581 -19650949 + B1_Mur1 SINE Alu 4 147 -2 1 1360 1108 130 11 0 chr12 101607409 101607586 -19649944 - L1_Mus3 LINE L1 -3 6635 6457 1 1360 1029 236 13 39 chr12 101607616 101607845 -19649685 + ID_B1 SINE B4 2 224 0 1 1360 2269 119 65 16 chr12 101608418 101608786 -19648744 - ORR1B1 LTR MaLR -8 386 1 1 1360 1825 186 36 6 chr12 101608786 101609116 -19648414 + ORR1D1 LTR MaLR 22 361 -13 1 1360 240 250 86 12 chr12 101609119 101609200 -19648330 - MLT1A1 LTR MaLR -321 87 1 1 1360 287 348 53 18 chr12 101609228 101609342 -19648188 + ORR1E LTR MaLR 21 138 -221 1 1360 186 43 0 0 chr12 101609373 101609396 -19648134 + (TCC)n Simple_repeat Simple_repeat 3 25 0 1 1360 812 125 102 0 chr12 101609396 101609524 -19648006 - B1_Mus1 SINE Alu -6 142 2 1 1360 389 103 15 0 chr12 101612530 101612598 -19644932 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1360 466 296 89 30 chr12 101613660 101613862 -19643668 + LTR86B2 LTR ERVL 17 230 -257 1 1360 236 173 0 37 chr12 101614611 101614665 -19642865 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1360 1313 28 0 28 chr12 101615772 101615954 -19641576 + (TCTCCC)n Simple_repeat Simple_repeat 2 178 0 1 1360 248 77 26 0 chr12 101615954 101615993 -19641537 + (TCTCC)n Simple_repeat Simple_repeat 1 40 0 1 1360 362 211 12 50 chr12 101616043 101616123 -19641407 - B4A SINE B4 -201 91 15 1 1360 354 367 0 32 chr12 101617200 101617307 -19640223 + (CCCA)n Simple_repeat Simple_repeat 1 104 0 1 1360 468 111 0 0 chr12 101617307 101617379 -19640151 + (TCCA)n Simple_repeat Simple_repeat 1 72 0 1 1360 354 367 0 32 chr12 101617379 101617457 -19640073 + (CCCA)n Simple_repeat Simple_repeat 1 76 0 1 1360 183 259 18 18 chr12 101617518 101617573 -19639957 - L2c LINE L2 -43 3344 3290 1 1360 196 350 39 10 chr12 101617823 101617927 -19639603 - MIRb SINE MIR -156 112 6 1 1360 369 75 0 0 chr12 101618103 101618156 -19639374 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1360 207 0 0 0 chr12 101620722 101620745 -19636785 + (GGGTG)n Simple_repeat Simple_repeat 2 24 0 1 1360 300 341 47 47 chr12 101621596 101621768 -19635762 + L1ME3B LINE L1 6068 6239 -1 1 1360 288 0 0 0 chr12 101623471 101623503 -19634027 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1360 641 241 134 77 chr12 101627076 101627337 -19630193 + B4A SINE B4 1 276 -16 1 1360 284 246 53 0 chr12 101627407 101627464 -19630066 - RSINE1 SINE B4 -104 61 2 1 1360 805 177 14 0 chr12 101627647 101627788 -19629742 + B1_Mur1 SINE Alu 1 143 -6 1 1360 207 0 0 0 chr12 101627788 101627811 -19629719 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1360 421 311 99 33 chr12 101628184 101628397 -19629133 - MIR SINE MIR -21 241 15 1 1360 207 0 0 0 chr12 101628495 101628518 -19629012 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 1 1360 467 355 103 27 chr12 101628588 101628851 -19628679 - LTR89 LTR ERVL? -36 843 561 1 1360 451 293 36 43 chr12 101628878 101628937 -19628593 + ID SINE ID 2 61 -163 1 1360 477 0 0 0 chr12 101628937 101628990 -19628540 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1360 451 293 36 43 chr12 101628990 101629011 -19628519 + ID SINE ID 62 81 -143 1 1360 385 270 100 0 chr12 101629011 101629111 -19628419 + PB1D10 SINE Alu 1 110 -7 1 1360 848 128 6 75 chr12 101629123 101629283 -19628247 + B3 SINE B2 4 152 -64 1 1360 189 0 0 0 chr12 101629303 101629324 -19628206 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1360 252 337 103 49 chr12 101629351 101629535 -19627995 - LTR89 LTR ERVL? -351 528 335 1 1360 1457 60 5 11 chr12 101629734 101629919 -19627611 + B2_Mm1a SINE B2 1 184 -9 1 1360 21 57 0 0 chr12 101631101 101631136 -19626394 + AT_rich Low_complexity Low_complexity 1 35 0 1 1360 303 352 90 4 chr12 101631270 101631398 -19626132 - MIR SINE MIR -90 178 40 1 1360 758 180 50 0 chr12 101631824 101631963 -19625567 - B1_Mur3 SINE Alu -3 146 1 1 1360 303 257 140 9 chr12 101632571 101632685 -19624845 + L1MB7 LINE L1 4786 4914 -1226 1 1360 528 252 17 25 chr12 101632711 101632829 -19624701 + MTE2b LTR MaLR 1 117 -262 1 1360 1259 219 49 77 chr12 101632819 101633146 -19624384 + MTE2a LTR MaLR 49 366 -13 1 1360 1285 302 28 28 chr12 101633168 101633590 -19623940 + MTE2a-int LTR MaLR 2 423 -1157 1 1360 514 255 28 0 chr12 101633568 101633674 -19623856 + MTE2a-int LTR MaLR 553 661 -919 1 1360 1342 297 89 16 chr12 101633666 101634046 -19623484 + MTE2a-int LTR MaLR 815 1222 -358 1 1360 249 211 0 0 chr12 101634076 101634133 -19623397 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1360 670 279 37 27 chr12 101634208 101634396 -19623134 - B4A SINE B4 -102 190 1 1 1360 551 181 117 8 chr12 101634396 101634506 -19623024 + MTE2b LTR MaLR 256 379 0 1 1360 922 257 127 107 chr12 101634516 101635518 -19622012 + L1MB7 LINE L1 4974 5989 -195 1 1360 603 40 0 0 chr12 101635518 101635592 -19621938 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1360 922 247 128 140 chr12 101635592 101635721 -19621809 + L1MB7 LINE L1 5990 6128 -56 1 1360 730 292 108 7 chr12 101637457 101637726 -19619804 - Tigger7 DNA MER2_type -2195 296 1 1 1360 852 302 43 8 chr12 101638063 101638320 -19619210 + B4A SINE B4 9 274 -18 1 1360 282 29 0 0 chr12 101638370 101638405 -19619125 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1360 275 286 75 28 chr12 101638423 101638552 -19618978 - MIRc SINE MIR -103 165 30 1 1360 438 20 0 0 chr12 101638709 101638760 -19618770 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1360 383 233 100 0 chr12 101639193 101639283 -19618247 - B3A SINE B2 -98 100 2 2 1360 331 302 35 0 chr12 101639743 101639829 -19617701 + L1MB5 LINE L1 6085 6173 -1 2 1360 182 255 19 19 chr12 101642602 101642654 -19614876 - L4 LINE RTE -1357 672 621 2 1360 21 0 0 0 chr12 101646040 101646061 -19611469 + AT_rich Low_complexity Low_complexity 1 21 0 2 1360 23 54 0 0 chr12 101646175 101646212 -19611318 + AT_rich Low_complexity Low_complexity 1 37 0 2 1360 3308 215 153 2 chr12 101648588 101649433 -19608097 + RCHARR1 DNA MER1_type 2 973 -1 2 1360 1843 266 103 16 chr12 101649950 101650763 -19606767 + L1M4 LINE L1 3494 4377 -1769 2 1360 574 221 41 0 chr12 101650834 101650956 -19606574 + Lx8 LINE L1 7193 7319 -154 2 1360 1613 229 40 58 chr12 101651009 101651436 -19606094 - MTD LTR MaLR 0 419 1 2 1360 367 256 74 100 chr12 101651485 101651754 -19605776 + L1M4 LINE L1 4408 4669 -1477 2 1360 605 228 65 80 chr12 101653733 101653933 -19603597 - B3A SINE B2 0 198 2 2 1360 294 29 0 0 chr12 101654557 101654592 -19602938 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1360 967 274 108 40 chr12 101655232 101655703 -19601827 - L1MB5 LINE L1 -43 6131 5629 2 1360 597 28 0 0 chr12 101656161 101656232 -19601298 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2 1360 204 135 81 0 chr12 101656250 101656287 -19601243 + polypyrimidine Low_complexity Low_complexity 4 43 0 2 1360 441 0 0 0 chr12 101656536 101656585 -19600945 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1360 1427 259 107 20 chr12 101656996 101657556 -19599974 + L1MB8 LINE L1 5454 6062 -116 2 1360 268 190 81 92 chr12 101658301 101658388 -19599142 + MTEb LTR MaLR 136 221 -158 2 1360 396 0 0 0 chr12 101661321 101661365 -19596165 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1360 234 0 0 0 chr12 101661365 101661390 -19596140 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1360 1017 272 132 79 chr12 101661411 101662069 -19595461 - L1_Rod LINE L1 -90 5757 5065 2 1360 1336 89 21 5 chr12 101662087 101662279 -19595251 + B2_Mm2 SINE B2 1 195 0 2 1360 386 108 15 0 chr12 101662783 101662848 -19594682 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1360 934 179 110 0 chr12 101662849 101663022 -19594508 - B3 SINE B2 -12 204 13 2 1360 231 250 78 0 chr12 101664499 101664563 -19592967 - MamSINE1 SINE tRNA -219 71 3 2 1360 565 222 198 33 chr12 101665166 101665348 -19592182 - B3 SINE B2 0 216 5 2 1360 185 244 0 0 chr12 101665531 101665572 -19591958 + MIR SINE MIR 20 60 -202 2 1360 1872 215 41 39 chr12 101665711 101666123 -19591407 + MTD LTR MaLR 7 419 0 2 1360 213 309 14 29 chr12 101667994 101668064 -19589466 - MIR SINE MIR -161 101 33 2 1360 3035 152 29 24 chr12 101668826 101669380 -19588150 - Lx4B LINE L1 -3 7055 6499 2 1360 3433 155 5 26 chr12 101669415 101670026 -19587504 + L1_Mur2 LINE L1 5172 5769 -108 2 1360 822 223 66 5 chr12 101670194 101670392 -19587138 + MTD LTR MaLR 210 419 0 2 1360 189 0 0 0 chr12 101671061 101671082 -19586448 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1360 764 185 211 11 chr12 101671199 101671374 -19586156 - B3 SINE B2 -6 210 1 2 1360 283 270 79 10 chr12 101671410 101671511 -19586019 + PB1D10 SINE Alu 9 116 -1 2 1360 462 283 20 95 chr12 101671781 101672086 -19585444 + L1ME1 LINE L1 1633 1914 -4501 2 1360 567 229 66 0 chr12 101672095 101672217 -19585313 + B3 SINE B2 80 209 -7 2 1360 345 286 154 107 chr12 101672240 101672295 -19585235 + L1ME1 LINE L1 2017 2063 -4337 2 1360 507 250 85 33 chr12 101672295 101672448 -19585082 + RSINE1 SINE B4 4 164 -1 2 1360 345 286 154 107 chr12 101672448 101672568 -19584962 + L1ME1 LINE L1 2064 2181 -4219 2 1360 310 283 104 0 chr12 101672568 101672674 -19584856 + PB1D10 SINE Alu 1 117 0 2 1360 366 303 129 87 chr12 101672674 101673012 -19584518 + L1ME1 LINE L1 2182 2559 -3780 2 1360 350 313 109 9 chr12 101673034 101673263 -19584267 + L1ME1 LINE L1 4188 4439 -1880 2 1360 468 245 142 0 chr12 101673266 101673372 -19584158 + RSINE1 SINE B4 2 122 -43 2 1360 384 240 44 25 chr12 101673416 101673574 -19583956 + L1ME1 LINE L1 4440 4600 -1719 2 1360 753 192 78 47 chr12 101673736 101673927 -19583603 - B3A SINE B2 0 198 2 2 1360 426 296 126 0 chr12 101673927 101674061 -19583469 - B4A SINE B4 -62 230 80 2 1360 946 272 128 94 chr12 101674061 101674272 -19583258 + L1ME1 LINE L1 4638 4839 -1480 2 1360 731 221 0 46 chr12 101674272 101674424 -19583106 + B1_Mm SINE Alu 1 145 -2 2 1360 946 272 128 94 chr12 101674424 101675020 -19582510 + L1ME1 LINE L1 4840 5472 -847 2 1360 271 324 0 19 chr12 101675031 101675138 -19582392 + (CA)n Simple_repeat Simple_repeat 2 106 0 2 1360 721 309 106 9 chr12 101675175 101675599 -19581931 + L1ME1 LINE L1 5509 5973 -379 2 1360 736 235 136 93 chr12 101675615 101675873 -19581657 + B4 SINE B4 24 292 0 2 1360 231 167 0 0 chr12 101675939 101675981 -19581549 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1360 428 269 81 12 chr12 101675981 101676154 -19581376 + L1ME1 LINE L1 5985 6169 -183 2 1360 1400 254 29 17 chr12 101677365 101677713 -19579817 + ORR1E LTR MaLR 2 353 -6 2 1360 262 310 86 0 chr12 101677986 101678102 -19579428 - L2a LINE L2 -35 3391 3266 2 1360 805 289 69 20 chr12 101678148 101678395 -19579135 - LTR87 LTR ERVL? -28 596 338 2 1360 819 228 102 69 chr12 101678529 101678887 -19578643 - MTD LTR MaLR 0 419 1 2 1360 252 325 23 11 chr12 101678887 101678961 -19578569 - LTR87 LTR ERVL? -545 79 5 2 1360 195 162 0 0 chr12 101679783 101679820 -19577710 + G-rich Low_complexity Low_complexity 1 37 0 2 1360 955 241 174 41 chr12 101680742 101681036 -19576494 + ORR1D2 LTR MaLR 22 354 -16 2 1360 4058 85 81 0 chr12 101681155 101681710 -19575820 + MT2B LTR ERVL 1 600 -1 2 1360 402 21 0 0 chr12 101682766 101682813 -19574717 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1360 519 69 0 0 chr12 101683500 101683572 -19573958 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1360 384 22 0 0 chr12 101684698 101684743 -19572787 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1360 729 225 98 6 chr12 101684775 101684949 -19572581 - B4A SINE B4 -97 195 6 2 1360 234 0 0 0 chr12 101685722 101685748 -19571782 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1360 452 327 76 109 chr12 101686420 101686707 -19570823 - HAL1b LINE L1 -29 1980 1686 2 1360 235 306 28 0 chr12 101686707 101686779 -19570751 - ID4_ SINE ID -9 74 1 2 1360 452 327 76 109 chr12 101686779 101687025 -19570505 - HAL1b LINE L1 -324 1685 1468 2 1360 1198 74 0 0 chr12 101687025 101687173 -19570357 - B1_Mus1 SINE Alu 0 148 1 2 1360 452 327 76 109 chr12 101687173 101687232 -19570298 - HAL1b LINE L1 -542 1467 1408 2 1360 4901 38 0 2 chr12 101687232 101687809 -19569721 - L1Md_F2 LINE L1 -3 6579 6004 2 1360 543 35 23 23 chr12 101687833 101687920 -19569610 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 2 1360 597 287 11 128 chr12 101688034 101688131 -19569399 - L1M4 LINE L1 -1373 4770 4685 2 1360 3079 60 17 7 chr12 101688131 101688534 -19568996 + L1Md_F2 LINE L1 6176 6582 0 2 1360 597 307 131 54 chr12 101688534 101689014 -19568516 - L1M4 LINE L1 -1459 4687 4155 2 1360 352 279 153 31 chr12 101689245 101689441 -19568089 - L1M4 LINE L1 -2150 3996 3777 2 1360 788 254 115 0 chr12 101689443 101689652 -19567878 - Tigger5 DNA MER2_type -1 2405 2173 2 1360 330 170 125 21 chr12 101689876 101689972 -19567558 - ORR1C1-int LTR MaLR -1021 942 837 2 1360 1318 158 18 5 chr12 101689974 101690196 -19567334 - URR1B DNA MER1_type 0 225 1 2 1360 2859 186 71 11 chr12 101690196 101690227 -19567303 - ORR1C1-int LTR MaLR -859 650 616 2 1360 750 137 17 0 chr12 101690227 101690344 -19567186 - PB1D9 SINE Alu -1 119 1 2 1360 2859 186 71 11 chr12 101690344 101690925 -19566605 - ORR1C1-int LTR MaLR -894 615 1 2 1360 2043 159 29 27 chr12 101690925 101691299 -19566231 - ORR1C1 LTR MaLR 0 378 4 2 1360 333 68 0 0 chr12 101691456 101691500 -19566030 + (ATG)n Simple_repeat Simple_repeat 2 45 0 2 1360 798 270 0 38 chr12 101691504 101691689 -19565841 + B3A SINE B2 17 194 -4 2 1360 759 250 91 42 chr12 101691704 101691998 -19565532 + L1MB7 LINE L1 5789 6100 -84 2 1360 244 392 0 0 chr12 101692013 101692087 -19565443 + AluF_3 SINE Alu 137 210 -101 2 1360 259 262 0 0 chr12 101692137 101692198 -19565332 + L1MB8 LINE L1 6111 6171 -7 2 1360 560 281 18 89 chr12 101692227 101692395 -19565135 - RSINE1 SINE B4 -3 162 7 2 1360 25 31 0 0 chr12 101692404 101692436 -19565094 + AT_rich Low_complexity Low_complexity 1 32 0 2 1360 2979 58 48 3 chr12 101692883 101693262 -19564268 + MTA_Mm LTR MaLR 1 396 0 2 1360 235 231 25 109 chr12 101694611 101694725 -19562805 - MIRb SINE MIR -132 136 29 2 1360 1475 63 5 16 chr12 101695167 101695359 -19562171 + B2_Mm1a SINE B2 2 191 -2 2 1360 261 304 34 25 chr12 101696770 101696888 -19560642 - MIR SINE MIR -27 235 117 2 1360 251 256 11 0 chr12 101696953 101697043 -19560487 + (CCCCAG)n Simple_repeat Simple_repeat 5 95 0 2 1360 4501 12 2 0 chr12 101697045 101697537 -19559993 + MT2_Mm LTR ERVL 1 493 0 2 1360 41619 14 14 0 chr12 101697537 101702824 -19554706 + MERVL-int LTR ERVL 1 5360 -125 2 1360 403 167 46 35 chr12 101702824 101702911 -19554619 + ORR1A3-int LTR MaLR 553 640 -1323 2 1360 319 0 0 0 chr12 101702911 101702949 -19554581 + MERVL-int LTR ERVL 5448 5485 0 2 1360 4501 12 2 0 chr12 101702949 101703441 -19554089 + MT2_Mm LTR ERVL 1 493 0 2 1360 365 289 8 0 chr12 101703441 101703697 -19553833 + (CCCCAG)n Simple_repeat Simple_repeat 1 258 0 2 1360 1081 82 7 0 chr12 101703971 101704117 -19553413 - B1_Mus1 SINE Alu 0 148 2 2 1360 322 256 195 8 chr12 101704658 101704776 -19552754 - B1_Mur1 SINE Alu -5 144 5 2 1360 672 275 61 34 chr12 101704958 101705288 -19552242 + MLT2B4 LTR ERVL 1 332 -183 2 1360 382 114 0 28 chr12 101706105 101706177 -19551353 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1360 975 213 61 0 chr12 101706483 101706680 -19550850 + B3 SINE B2 2 210 -6 2 1360 880 293 129 19 chr12 101706725 101707251 -19550279 - L1MC2 LINE L1 -181 6163 5580 2 1360 1171 292 111 20 chr12 101707381 101708084 -19549446 - L1MB7 LINE L1 -164 6020 5254 2 1360 488 300 72 58 chr12 101708518 101708741 -19548789 + MER77 LTR ERVL 379 604 -3 2 1360 833 131 124 0 chr12 101709218 101709355 -19548175 + B2_Mm2 SINE B2 1 154 -41 2 1360 215 0 67 0 chr12 101709356 101709386 -19548144 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 2 1360 446 286 65 19 chr12 101709471 101709578 -19547952 + PB1D10 SINE Alu 4 115 -2 2 1360 410 319 208 16 chr12 101709626 101709929 -19547601 - L1MEc LINE L1 -4132 2268 1908 2 1360 317 260 272 4 chr12 101710144 101710372 -19547158 - L1MEc LINE L1 -4804 1596 1308 2 1360 449 268 74 80 chr12 101710389 101710551 -19546979 + B4A SINE B4 3 163 -129 2 1360 580 225 104 14 chr12 101710655 101710876 -19546654 - L1MEc LINE L1 -5238 1162 922 2 1360 249 33 0 0 chr12 101711193 101711223 -19546307 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2 1361 25 0 0 0 chr12 101711907 101711932 -19545598 + AT_rich Low_complexity Low_complexity 1 25 0 2 1361 207 0 0 0 chr12 101712651 101712674 -19544856 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1361 247 248 86 55 chr12 101712699 101712827 -19544703 - MIRc SINE MIR -113 155 24 3 1361 1130 68 0 7 chr12 101713516 101713663 -19543867 - B1_Mus1 SINE Alu 0 148 3 3 1361 183 100 0 0 chr12 101714383 101714413 -19543117 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1361 307 263 98 2 chr12 101714673 101714789 -19542741 - MIR SINE MIR -131 137 13 3 1361 670 132 5 15 chr12 101714870 101715001 -19542529 + B1_Mus1 SINE Alu 15 149 0 3 1361 481 290 114 9 chr12 101715138 101715456 -19542074 - L1MB7 LINE L1 -1 6183 5801 3 1361 285 335 29 33 chr12 101715533 101715774 -19541756 - L1MB7 LINE L1 -350 5828 5589 3 1361 425 243 97 18 chr12 101716540 101716653 -19540877 + RSINE1 SINE B4 41 162 -3 3 1361 1002 68 7 13 chr12 101718095 101718245 -19539285 - L1Md_F2 LINE L1 0 6582 6434 3 1361 589 301 169 21 chr12 101720784 101721203 -19536327 - LTR33A LTR ERVL -1 519 39 3 1361 238 359 86 0 chr12 101721693 101721810 -19535720 + ID_B1 SINE B4 49 175 -49 3 1361 363 242 67 19 chr12 101721728 101721853 -19535677 + PB1D7 SINE Alu 11 131 -18 3 1361 1559 292 147 32 chr12 101722007 101722800 -19534730 + L1MB7 LINE L1 3597 4491 -1655 3 1361 1489 74 16 0 chr12 101722800 101722989 -19534541 + B2_Mm2 SINE B2 2 193 -2 3 1361 1559 293 142 33 chr12 101722989 101723538 -19533992 + L1MB7 LINE L1 4492 5091 -1055 3 1361 1360 301 68 29 chr12 101723563 101724245 -19533285 + Lx7 LINE L1 6723 7444 -29 3 1361 320 285 170 20 chr12 101724254 101724488 -19533042 + L1MB7 LINE L1 5172 5444 -734 3 1361 742 217 24 36 chr12 101724525 101724730 -19532800 + B3A SINE B2 7 216 0 3 1361 687 264 246 55 chr12 101724798 101725310 -19532220 + L1MB7 LINE L1 5566 6175 -9 3 1361 534 270 24 36 chr12 101725327 101725492 -19532038 + RSINE1 SINE B4 3 165 0 3 1361 465 192 7 24 chr12 101725650 101725944 -19531586 + (CA)n Simple_repeat Simple_repeat 1 288 0 3 1361 349 242 29 48 chr12 101726154 101726258 -19531272 - ORR1E LTR MaLR -251 108 7 3 1361 2572 169 14 42 chr12 101731584 101732102 -19525428 + Lx9 LINE L1 7142 7644 0 3 1361 496 224 7 14 chr12 101732134 101732279 -19525251 + GA-rich Low_complexity Low_complexity 4 147 0 3 1361 546 276 59 12 chr12 101732325 101732494 -19525036 + MIR SINE MIR 20 196 -66 3 1361 243 369 10 2 chr12 101732912 101733015 -19524515 - MIRb SINE MIR -6 262 156 3 1361 775 290 76 58 chr12 101733748 101734198 -19523332 + L1MB7 LINE L1 5676 6133 -51 3 1361 2224 70 9 68 chr12 101734913 101735249 -19522281 + ORR1A3 LTR MaLR 1 316 -10 3 1361 242 186 53 67 chr12 101735392 101735467 -19522063 + L1MB3 LINE L1 6101 6174 -9 3 1361 203 32 0 61 chr12 101735893 101735926 -19521604 + (TAA)n Simple_repeat Simple_repeat 3 33 0 3 1361 209 219 0 0 chr12 101735970 101736011 -19521519 - MIRc SINE MIR -68 200 160 3 1361 253 255 152 29 chr12 101736683 101736788 -19520742 - MIR3 SINE MIR -20 188 71 3 1361 450 237 0 0 chr12 101736816 101736955 -19520575 + (TA)n Simple_repeat Simple_repeat 1 139 0 3 1361 183 42 0 0 chr12 101736958 101736982 -19520548 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 3 1361 719 219 29 0 chr12 101736985 101737122 -19520408 + B3 SINE B2 2 142 -74 3 1361 834 249 218 27 chr12 101737378 101737671 -19519859 + MTE2a LTR MaLR 31 379 0 3 1361 180 0 0 0 chr12 101737883 101737903 -19519627 + (CGTG)n Simple_repeat Simple_repeat 2 21 0 3 1361 369 0 0 0 chr12 101739006 101739047 -19518483 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1361 348 311 0 0 chr12 101739798 101739888 -19517642 - MER33 DNA MER1_type -208 116 27 3 1361 1300 34 0 0 chr12 101740046 101740192 -19517338 - B1_Mus2 SINE Alu 0 147 2 3 1361 644 215 25 100 chr12 101740429 101740589 -19516941 - B1_Mur1 SINE Alu 0 149 2 3 1361 361 274 0 0 chr12 101740717 101740800 -19516730 - ID2 SINE ID -54 98 16 3 1361 325 169 185 53 chr12 101742057 101742187 -19515343 + MIRb SINE MIR 1 142 -134 3 1361 239 317 41 24 chr12 101743379 101743502 -19514028 + L1M5 LINE L1 5536 5660 -464 3 1361 491 176 8 23 chr12 101744094 101744222 -19513308 + GA-rich Low_complexity Low_complexity 1 126 0 3 1361 354 291 28 37 chr12 101744237 101744344 -19513186 + RSINE1 SINE B4 43 148 -17 3 1361 1533 48 5 0 chr12 101744537 101744723 -19512807 - B2_Mm1a SINE B2 -5 188 2 3 1361 441 261 114 8 chr12 101744880 101745010 -19512520 + Tigger5 DNA MER2_type 2222 2365 -41 3 1361 737 274 9 123 chr12 101745010 101745282 -19512248 + MTEa LTR MaLR 1 244 -135 3 1361 313 260 98 46 chr12 101745444 101745597 -19511933 - L2 LINE L2 -561 2858 2698 3 1361 1528 56 0 20 chr12 101746635 101746834 -19510696 - B2_Mm2 SINE B2 0 195 1 3 1361 195 216 39 19 chr12 101748086 101748138 -19509392 - L2a LINE L2 -19 3407 3355 3 1361 290 302 74 19 chr12 101748137 101748245 -19509285 - L2a LINE L2 -13 3413 3300 3 1361 950 170 356 25 chr12 101748507 101748791 -19508739 + ORR1C1 LTR MaLR 1 378 0 3 1361 1284 256 28 52 chr12 101749100 101749463 -19508067 + ORR1E LTR MaLR 4 357 -2 3 1361 1061 217 5 5 chr12 101749705 101749909 -19507621 + B3 SINE B2 11 214 -2 3 1361 369 304 86 9 chr12 101750306 101750422 -19507108 + MER5A DNA MER1_type 38 162 -27 3 1361 297 364 53 71 chr12 101751297 101751563 -19505967 - MLT1L LTR MaLR -166 444 184 3 1361 534 16 0 0 chr12 101752115 101752178 -19505352 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1361 691 280 84 44 chr12 101752212 101752485 -19505045 - B4A SINE B4 -8 284 1 3 1361 486 46 0 0 chr12 101753378 101753443 -19504087 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1361 442 66 0 0 chr12 101753479 101753540 -19503990 - B1_Mm SINE Alu 0 147 87 3 1361 1228 68 0 0 chr12 101753564 101753711 -19503819 - B1_Mm SINE Alu 0 147 1 3 1361 211 323 32 0 chr12 101754400 101754462 -19503068 - MIRc SINE MIR -122 146 83 3 1361 225 299 61 98 chr12 101754531 101754694 -19502836 + L2 LINE L2 780 936 -2483 3 1361 268 313 24 12 chr12 101754916 101755000 -19502530 - MIRc SINE MIR -103 165 81 3 1361 666 201 114 42 chr12 101755020 101755186 -19502344 + ID_B1 SINE B4 22 199 -25 3 1361 417 234 43 51 chr12 101755082 101755199 -19502331 + B1F SINE Alu 19 134 -15 3 1361 442 248 168 39 chr12 101756007 101756162 -19501368 - ID_B1 SINE B4 0 224 50 3 1361 229 245 75 0 chr12 101756176 101756229 -19501301 - B1_Mur3 SINE Alu -88 61 5 3 1361 337 266 148 17 chr12 101757537 101757652 -19499878 + B1F1 SINE Alu 7 136 -13 3 1361 195 100 0 0 chr12 101758470 101758500 -19499030 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1361 22 56 0 0 chr12 101758669 101758705 -19498825 + GC_rich Low_complexity Low_complexity 1 36 0 3 1361 80 85 0 13 chr12 101758901 101759140 -19498390 + GC_rich Low_complexity Low_complexity 1 236 0 3 1361 414 0 0 0 chr12 101759464 101759510 -19498020 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1361 412 304 180 0 chr12 101759889 101760083 -19497447 - L2 LINE L2 -337 3082 2854 3 1361 333 0 0 0 chr12 101760596 101760633 -19496897 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1361 279 0 0 0 chr12 101760633 101760663 -19496867 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1361 559 165 35 35 chr12 101760694 101760807 -19496723 + ORR1B1 LTR MaLR 1 113 -281 3 1361 281 191 14 87 chr12 101761497 101761566 -19495964 - ORR1D2 LTR MaLR 0 370 307 3 1361 405 0 0 0 chr12 101761618 101761663 -19495867 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1361 315 0 0 0 chr12 101761663 101761697 -19495833 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1361 1186 236 125 37 chr12 101761697 101761726 -19495804 - ORR1D2 LTR MaLR -37 333 310 3 1361 1986 117 92 87 chr12 101761726 101762118 -19495412 + ORR1B1 LTR MaLR 1 394 0 3 1361 1186 236 125 37 chr12 101762118 101762262 -19495268 - ORR1D2 LTR MaLR -61 309 153 3 1361 1478 58 11 5 chr12 101762262 101762452 -19495078 - B2_Mm2 SINE B2 -2 193 3 3 1361 1186 236 125 37 chr12 101762452 101762572 -19494958 - ORR1D2 LTR MaLR -218 152 13 3 1361 28 0 0 0 chr12 101762663 101762691 -19494839 + AT_rich Low_complexity Low_complexity 1 28 0 3 1361 190 310 109 49 chr12 101763455 101763638 -19493892 + L2a LINE L2 3034 3227 -199 3 1361 220 312 115 9 chr12 101763671 101763715 -19493815 + L2a LINE L2 3285 3329 -97 3 1361 396 0 0 0 chr12 101763715 101763759 -19493771 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1361 220 312 115 9 chr12 101763759 101763827 -19493703 + L2a LINE L2 3330 3408 -18 3 1361 741 291 52 0 chr12 101763835 101764045 -19493485 + ID_B1 SINE B4 3 223 -1 3 1361 201 250 0 0 chr12 101764047 101764091 -19493439 + GA-rich Low_complexity Low_complexity 3 46 0 3 1361 189 0 0 0 chr12 101764211 101764232 -19493298 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 3 1361 434 296 0 0 chr12 101765215 101765313 -19492217 + PB1D10 SINE Alu 7 104 -13 3 1361 273 266 47 0 chr12 101765593 101765657 -19491873 + ID4_ SINE ID 4 70 -13 3 1361 279 0 0 0 chr12 101768597 101768628 -19488902 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1361 677 89 0 0 chr12 101768629 101768719 -19488811 - B1_Mus2 SINE Alu -12 135 46 3 1361 286 213 32 32 chr12 101768663 101768726 -19488804 - MT2B LTR ERVL -345 256 194 3 1361 532 298 118 20 chr12 101768726 101769082 -19488448 - L1MB8 LINE L1 -166 6012 5622 3 1361 1487 221 25 47 chr12 101769089 101769450 -19488080 - ORR1E LTR MaLR -5 354 2 3 1361 456 254 17 9 chr12 101769451 101769566 -19487964 - L1MB8 LINE L1 -552 5626 5511 3 1361 1068 297 100 75 chr12 101769622 101770102 -19487428 - MER21B LTR ERV1 -64 799 308 3 1361 401 299 60 0 chr12 101770099 101770216 -19487314 - MER21B LTR ERV1 -732 131 8 3 1361 353 136 0 15 chr12 101770386 101770453 -19487077 + CT-rich Low_complexity Low_complexity 3 68 0 3 1361 485 311 102 6 chr12 101770453 101770786 -19486744 - L1MB8 LINE L1 -837 5309 4945 3 1361 28 29 0 0 chr12 101772041 101772076 -19485454 + AT_rich Low_complexity Low_complexity 1 35 0 3 1361 297 197 0 0 chr12 101772080 101772146 -19485384 + (CATA)n Simple_repeat Simple_repeat 2 67 0 3 1361 665 271 22 22 chr12 101772149 101772330 -19485200 - B3A SINE B2 -16 182 2 3 1361 307 211 176 69 chr12 101772519 101772621 -19484909 + MLT1F LTR MaLR 376 488 -60 3 1361 279 190 0 0 chr12 101773007 101773065 -19484465 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 3 1361 237 163 31 61 chr12 101773993 101774091 -19483439 - RMER17C LTR ERVK -137 273 179 4 1361 473 150 9 123 chr12 101774072 101774186 -19483344 + B1_Mur4 SINE Alu 43 143 -7 4 1361 315 0 0 0 chr12 101774187 101774222 -19483308 + (CCAA)n Simple_repeat Simple_repeat 4 38 0 4 1361 2370 180 166 19 chr12 101774250 101774977 -19482553 + RMER13A LTR ERVK 1 834 -26 4 1361 216 0 0 0 chr12 101775684 101775708 -19481822 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1361 665 193 7 0 chr12 101776085 101776230 -19481300 + GA-rich Low_complexity Low_complexity 3 148 0 4 1361 348 24 0 0 chr12 101776230 101776271 -19481259 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1361 927 187 0 0 chr12 101776355 101776505 -19481025 + B1_Mur4 SINE Alu 1 150 0 4 1361 200 321 0 45 chr12 101776528 101776639 -19480891 + A-rich Low_complexity Low_complexity 1 106 0 4 1361 232 288 64 10 chr12 101777194 101777298 -19480232 - MIRc SINE MIR -94 174 63 4 1361 234 0 0 0 chr12 101777875 101777901 -19479629 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 4 1361 561 15 0 0 chr12 101778292 101778358 -19479172 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 1361 21 36 0 0 chr12 101778422 101778450 -19479080 + AT_rich Low_complexity Low_complexity 1 28 0 4 1361 1608 37 0 0 chr12 101778662 101778852 -19478678 - B2_Mm1a SINE B2 -2 191 2 4 1361 2543 59 16 0 chr12 101778945 101779267 -19478263 - ORR1A2 LTR MaLR 0 327 1 4 1361 769 268 9 18 chr12 101779303 101779487 -19478043 + ID_B1 SINE B4 48 222 -2 4 1361 269 315 65 45 chr12 101780809 101781055 -19476475 - L1MB5 LINE L1 -33 6141 5891 4 1361 340 224 12 260 chr12 101781375 101781477 -19476053 - ID_B1 SINE B4 0 224 151 4 1361 886 212 60 5 chr12 101781477 101781676 -19475854 - B3 SINE B2 -6 210 1 4 1361 340 224 12 260 chr12 101781676 101781742 -19475788 - ID_B1 SINE B4 -74 150 98 4 1361 409 76 75 17 chr12 101782149 101782269 -19475261 + (TG)n Simple_repeat Simple_repeat 2 128 0 4 1361 353 302 135 44 chr12 101782293 101782951 -19474579 + L1MEg LINE L1 238 955 -5129 4 1361 323 294 123 12 chr12 101783467 101783629 -19473901 - B3A SINE B2 -18 180 1 4 1361 306 268 128 21 chr12 101783645 101783786 -19473744 + L1MEg LINE L1 1480 1635 -4449 4 1361 564 219 97 8 chr12 101785822 101785946 -19471584 + B1_Mur2 SINE Alu 2 136 -13 4 1361 550 0 29 0 chr12 101785946 101786016 -19471514 + (CAAAC)n Simple_repeat Simple_repeat 1 72 0 4 1361 853 140 20 20 chr12 101786423 101786569 -19470961 + B1_Mus2 SINE Alu 2 147 0 4 1361 523 252 14 22 chr12 101787202 101787340 -19470190 - B3A SINE B2 -61 137 1 4 1361 626 242 112 56 chr12 101790201 101790398 -19467132 - B3 SINE B2 -8 208 1 4 1361 626 215 33 0 chr12 101790414 101790535 -19466995 - ID_B1 SINE B4 -10 214 90 4 1361 306 73 0 0 chr12 101793014 101793055 -19464475 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1361 189 125 31 0 chr12 101793137 101793169 -19464361 - L4 LINE RTE -676 1353 1321 4 1361 446 321 98 98 chr12 101793311 101793670 -19463860 + MLT1B LTR MaLR 1 384 -6 4 1361 421 238 19 28 chr12 101794352 101794460 -19463070 - PB1D7 SINE Alu -12 108 2 4 1361 270 0 0 0 chr12 101794682 101794712 -19462818 + (CATA)n Simple_repeat Simple_repeat 2 31 0 4 1361 504 283 71 24 chr12 101797385 101797555 -19459975 + Tigger1 DNA MER2_type 53 230 -2188 4 1361 1002 175 106 0 chr12 101797576 101797765 -19459765 - B3 SINE B2 0 216 8 4 1361 741 269 107 26 chr12 101797763 101797996 -19459534 + Tigger1 DNA MER2_type 214 465 -1953 4 1361 5260 81 2 34 chr12 101798033 101798686 -19458844 - L1_Mur1 LINE L1 -460 5426 4798 4 1361 3494 55 24 7 chr12 101798686 101799143 -19458387 - L1Md_F2 LINE L1 0 6582 6118 4 1361 5260 81 2 34 chr12 101799143 101799321 -19458209 - L1_Mur1 LINE L1 -1089 4797 4621 4 1361 8805 76 34 16 chr12 101799316 101800854 -19456676 + Lx3A LINE L1 5396 6965 -16 4 1361 234 0 0 0 chr12 101800854 101800880 -19456650 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 4 1361 2767 160 68 16 chr12 101800897 101801386 -19456144 + RMER4B LTR ERVK 51 564 -21 4 1361 3924 221 285 21 chr12 101801385 101802928 -19454602 + Tigger1 DNA MER2_type 461 2410 -8 4 1361 373 250 11 56 chr12 101802955 101803044 -19454486 + B4A SINE B4 2 86 -206 4 1361 244 336 19 9 chr12 101803044 101803060 -19454470 + BC1_Mm scRNA scRNA 2 107 -45 4 1361 297 238 62 0 chr12 101803452 101803532 -19453998 + RMER30 DNA MER1_type 1 85 -117 4 1361 800 155 210 18 chr12 101803533 101803757 -19453773 + Lx7 LINE L1 7429 7695 -1 4 1361 265 241 36 48 chr12 101803792 101803875 -19453655 - Charlie12 DNA MER1_type -2753 120 39 4 1361 859 189 80 46 chr12 101803931 101804069 -19453461 + Lx9 LINE L1 5599 5729 -118 4 1361 522 0 0 0 chr12 101804069 101804127 -19453403 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1361 859 214 97 44 chr12 101804127 101804323 -19453207 + Lx9 LINE L1 5730 5990 -1654 4 1361 698 238 108 18 chr12 101804516 101804683 -19452847 + B3 SINE B2 1 182 -34 4 1361 617 184 28 0 chr12 101804715 101804824 -19452706 + B1_Mus2 SINE Alu 34 145 -2 4 1361 267 54 0 0 chr12 101804842 101804879 -19452651 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1361 1234 322 106 36 chr12 101804886 101805440 -19452090 + Lx9 LINE L1 6341 6984 -660 4 1361 363 23 0 0 chr12 101805440 101805484 -19452046 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1361 511 183 191 0 chr12 101805491 101805606 -19451924 - B1_Mur1 SINE Alu -10 139 3 4 1361 1234 322 106 36 chr12 101805606 101806044 -19451486 + Lx9 LINE L1 6986 7411 -233 4 1361 198 0 0 0 chr12 101807520 101807542 -19449988 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1361 684 221 172 33 chr12 101807580 101807795 -19449735 + MER2 DNA MER2_type 92 336 -9 4 1361 1028 126 0 30 chr12 101807798 101807962 -19449568 - B2_Mm2 SINE B2 -35 160 2 4 1361 768 152 43 0 chr12 101807987 101808125 -19449405 - B1_Mus1 SINE Alu 0 148 5 4 1361 1133 162 143 9 chr12 101809686 101809916 -19447614 + ORR1A4 LTR MaLR 69 329 0 4 1361 350 250 82 10 chr12 101809972 101810069 -19447461 + MLT1D LTR MaLR 4 107 -398 4 1361 419 241 61 18 chr12 101810103 101810217 -19447313 - PB1D9 SINE Alu 0 120 2 4 1361 565 303 125 33 chr12 101810277 101810461 -19447069 - B3 SINE B2 -14 202 2 4 1361 659 285 109 16 chr12 101810532 101810771 -19446759 + MLT1D LTR MaLR 224 505 0 4 1361 212 299 75 0 chr12 101811590 101811657 -19445873 + MIRb SINE MIR 165 236 -32 4 1361 368 280 50 10 chr12 101814831 101814932 -19442598 + B3A SINE B2 19 123 -75 4 1361 335 23 23 0 chr12 101814933 101814977 -19442553 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 1361 460 239 11 0 chr12 101815008 101815096 -19442434 - MTE2a LTR MaLR -32 347 259 4 1361 681 264 130 3 chr12 101815131 101815333 -19442197 - ID_B1 SINE B4 -44 248 25 4 1361 411 252 8 5 chr12 101815551 101815665 -19441865 + B1_Mur2 SINE Alu 17 148 -1 4 1361 295 254 91 58 chr12 101816173 101816233 -19441297 - B1F1 SINE Alu 0 149 86 4 1361 1153 193 57 0 chr12 101816233 101816445 -19441085 - URR1B DNA MER1_type 0 225 2 4 1361 529 136 67 11 chr12 101816448 101816537 -19440993 - B1_Mur2 SINE Alu -55 94 1 4 1361 276 30 0 0 chr12 101816781 101816814 -19440716 + (CCAA)n Simple_repeat Simple_repeat 4 36 0 4 1361 423 333 14 27 chr12 101817617 101817765 -19439765 + RSINE1 SINE B4 3 148 -17 4 1361 420 20 0 0 chr12 101817781 101817830 -19439700 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1361 247 246 18 0 chr12 101818454 101818511 -19439019 - ID4 SINE ID -23 60 3 4 1361 392 344 85 16 chr12 101819127 101819316 -19438214 - RMER30 DNA MER1_type 0 202 1 4 1361 329 306 240 0 chr12 101819789 101819910 -19437620 + RSINE1 SINE B4 4 153 -12 4 1361 285 51 0 0 chr12 101820014 101820053 -19437477 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1361 242 301 79 40 chr12 101820663 101820739 -19436791 + ID4_ SINE ID 2 80 -3 4 1361 220 339 150 12 chr12 101820823 101820990 -19436540 + MIRm SINE MIR 10 199 -77 4 1361 252 0 0 0 chr12 101821098 101821126 -19436404 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 4 1361 524 299 67 73 chr12 101821998 101822312 -19435218 - ORR1E LTR MaLR -47 312 1 4 1361 288 77 0 0 chr12 101822370 101822409 -19435121 + (TCTCC)n Simple_repeat Simple_repeat 4 42 0 4 1361 1098 97 7 0 chr12 101822420 101822564 -19434966 - B1_Mus1 SINE Alu -1 147 3 4 1361 234 0 0 0 chr12 101822607 101822633 -19434897 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 4 1361 5986 65 21 6 chr12 101822638 101823464 -19434066 - L1Md_F2 LINE L1 -14 6568 5731 4 1361 9307 60 2 1 chr12 101823463 101824707 -19432823 + L1Md_F2 LINE L1 4398 5642 -241 4 1361 384 318 104 67 chr12 101824715 101824850 -19432680 - ID_B1 SINE B4 -7 217 78 4 1361 3781 173 17 15 chr12 101825485 101826143 -19431387 + Lx5 LINE L1 6392 7050 0 4 1361 709 281 104 92 chr12 101827260 101827577 -19429953 + MLT1F2 LTR MaLR 232 552 -8 4 1361 642 254 149 18 chr12 101827586 101827807 -19429723 - MER58B DNA MER1_type -26 315 66 4 1361 262 165 70 35 chr12 101828256 101828339 -19429191 + RLTR11A LTR ERVK 99 190 -370 4 1361 480 229 59 0 chr12 101828575 101828693 -19428837 - MER2 DNA MER2_type -134 211 87 4 1361 466 291 58 19 chr12 101828802 101828956 -19428574 - MER2B DNA MER2_type -172 164 5 4 1361 803 196 22 0 chr12 101830621 101830759 -19426771 + B1_Mur1 SINE Alu 2 142 -7 4 1361 231 356 45 11 chr12 101831151 101831239 -19426291 - B1F SINE Alu -52 97 7 4 1361 615 274 91 22 chr12 101831514 101831869 -19425661 - L1ME1 LINE L1 -71 6281 5897 4 1361 903 121 29 0 chr12 101832079 101832219 -19425311 - B1_Mus1 SINE Alu 0 148 5 4 1361 390 298 114 11 chr12 101832225 101832640 -19424890 - L1ME1 LINE L1 -664 5688 5234 4 1361 278 335 70 21 chr12 101832800 101833041 -19424489 - L1ME1 LINE L1 -1113 5206 4954 4 1361 265 296 123 27 chr12 101833058 101833204 -19424326 - FAM SINE Alu 0 311 152 4 1361 274 234 162 12 chr12 101833211 101833371 -19424159 - L1ME1 LINE L1 -1338 4981 4798 4 1361 480 306 24 9 chr12 101833623 101833834 -19423696 - L1ME1 LINE L1 -6134 266 53 4 1361 25 0 0 0 chr12 101834612 101834637 -19422893 + AT_rich Low_complexity Low_complexity 1 25 0 4 1361 30 27 0 0 chr12 101835785 101835822 -19421708 + AT_rich Low_complexity Low_complexity 1 37 0 4 1361 681 164 58 36 chr12 101836460 101836599 -19420931 + B1_Mm SINE Alu 2 143 -4 4 1361 24 85 0 0 chr12 101837298 101837357 -19420173 + AT_rich Low_complexity Low_complexity 1 59 0 5 1361 628 238 95 0 chr12 101837358 101837505 -19420025 - B3A SINE B2 -4 194 34 5 1361 320 299 0 29 chr12 101837880 101837949 -19419581 + RSINE1 SINE B4 99 165 0 5 1361 459 0 0 0 chr12 101838227 101838278 -19419252 + (TATG)n Simple_repeat Simple_repeat 3 53 0 5 1361 311 273 36 0 chr12 101838283 101838393 -19419137 - Lx9 LINE L1 -174 7470 7357 5 1361 505 118 0 0 chr12 101838531 101838616 -19418914 + L1Md_F2 LINE L1 6491 6575 -7 5 1361 320 294 99 22 chr12 101838870 101839051 -19418479 + L1M5 LINE L1 3273 3467 -2679 5 1361 990 49 28 7 chr12 101839189 101839333 -19418197 + (TCTCC)n Simple_repeat Simple_repeat 3 149 0 5 1361 907 60 15 15 chr12 101839333 101839468 -19418062 + (TTTC)n Simple_repeat Simple_repeat 1 135 0 5 1361 991 98 0 0 chr12 101839470 101839603 -19417927 - B1_Mur4 SINE Alu -16 134 2 5 1361 703 219 96 58 chr12 101839757 101839965 -19417565 + B3 SINE B2 1 216 0 5 1361 875 232 24 63 chr12 101840053 101840306 -19417224 - B4 SINE B4 -42 250 8 5 1361 496 252 130 0 chr12 101840403 101840534 -19416996 + B4A SINE B4 145 292 0 5 1361 268 279 0 0 chr12 101840536 101840597 -19416933 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1361 202 297 162 0 chr12 101840744 101840818 -19416712 + L2 LINE L2 2523 2608 -811 5 1361 1279 85 11 0 chr12 101840840 101841017 -19416513 + B2_Mm1t SINE B2 10 188 -5 5 1361 303 330 145 39 chr12 101841017 101841354 -19416176 + L2 LINE L2 2616 2988 -431 5 1361 799 308 70 56 chr12 101841760 101842026 -19415504 + Lx8 LINE L1 6747 7015 -458 5 1361 789 201 0 21 chr12 101842026 101842168 -19415362 + B1_Mur1 SINE Alu 1 139 -10 5 1361 396 0 0 0 chr12 101842173 101842217 -19415313 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1361 799 308 70 56 chr12 101842217 101842518 -19415012 + Lx8 LINE L1 7016 7328 -145 5 1361 468 158 0 0 chr12 101842527 101842622 -19414908 + GA-rich Low_complexity Low_complexity 2 96 0 5 1362 659 194 8 15 chr12 101843452 101843583 -19413947 - RSINE1 SINE B4 -33 132 3 5 1362 1576 241 31 17 chr12 101843884 101844238 -19413292 + ORR1D2 LTR MaLR 5 363 -7 5 1362 1021 209 35 5 chr12 101845058 101845260 -19412270 - B3 SINE B2 -8 208 1 5 1362 24 32 0 0 chr12 101845378 101845409 -19412121 + AT_rich Low_complexity Low_complexity 1 31 0 5 1362 21 0 0 0 chr12 101846321 101846342 -19411188 + AT_rich Low_complexity Low_complexity 1 21 0 5 1362 788 232 93 0 chr12 101847559 101847753 -19409777 - B3 SINE B2 -4 212 1 5 1362 976 213 20 0 chr12 101848375 101848572 -19408958 + B3 SINE B2 2 202 -14 5 1362 1608 228 50 24 chr12 101848811 101849189 -19408341 + MTD LTR MaLR 32 419 0 5 1362 3529 104 7 4 chr12 101849338 101849898 -19407632 - L1_Mur1 LINE L1 -1966 3920 3359 5 1362 8156 92 45 21 chr12 101849897 101851360 -19406170 + Lx3C LINE L1 5475 6969 -7 5 1362 23 33 0 0 chr12 101851366 101851396 -19406134 + AT_rich Low_complexity Low_complexity 1 30 0 5 1362 415 236 100 23 chr12 101852376 101852506 -19405024 - B1F SINE Alu -9 140 1 5 1362 414 224 103 0 chr12 101852519 101852635 -19404895 - RMER1C Other Other -3 1339 1212 5 1362 2262 84 3 0 chr12 101852642 101852964 -19404566 + Lx3C LINE L1 6306 6628 -348 5 1362 770 215 22 22 chr12 101852964 101853145 -19404385 - RMER1C Other Other -159 1183 1003 5 1362 288 0 0 0 chr12 101853347 101853379 -19404151 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1362 409 264 92 0 chr12 101853381 101853468 -19404062 - RSINE1 SINE B4 -48 117 23 5 1362 24 0 0 0 chr12 101856273 101856297 -19401233 + AT_rich Low_complexity Low_complexity 1 24 0 5 1362 345 268 37 0 chr12 101856529 101856611 -19400919 - PB1D7 SINE Alu -9 111 27 5 1362 266 297 50 0 chr12 101857479 101857580 -19399950 - PB1D10 SINE Alu -10 107 2 5 1362 211 211 0 0 chr12 101858777 101858815 -19398715 + T-rich Low_complexity Low_complexity 2 39 0 5 1362 1180 48 7 0 chr12 101858817 101858963 -19398567 - B1_Mus1 SINE Alu 0 148 2 5 1362 21 0 0 0 chr12 101859301 101859322 -19398208 + AT_rich Low_complexity Low_complexity 1 21 0 5 1362 314 229 49 38 chr12 101859854 101860019 -19397511 - L1M4 LINE L1 -1127 5019 4839 5 1362 365 306 27 0 chr12 101860123 101860234 -19397296 - PB1 SINE Alu 0 127 14 5 1362 230 362 7 14 chr12 101860282 101860422 -19397108 - L1M4 LINE L1 -1446 4700 4562 5 1362 1098 138 5 31 chr12 101860583 101860777 -19396753 + B2_Mm2 SINE B2 2 190 -5 5 1362 259 194 125 0 chr12 101860806 101860878 -19396652 - L1M4 LINE L1 -1854 4292 4212 5 1362 1028 292 73 24 chr12 101860943 101861477 -19396053 - L1M4 LINE L1 -2072 4074 3515 5 1362 257 274 118 59 chr12 101861531 101861667 -19395863 - B1_Mm SINE Alu -3 144 1 5 1362 1069 286 88 41 chr12 101861815 101862686 -19394844 - L1M4 LINE L1 -2894 3252 2341 5 1362 905 258 62 93 chr12 101862714 101862970 -19394560 + RMER10A LTR ERVL 12 275 -167 5 1362 204 40 0 0 chr12 101862970 101862995 -19394535 + (TTCTC)n Simple_repeat Simple_repeat 3 27 0 5 1362 905 258 62 93 chr12 101862995 101863157 -19394373 + RMER10A LTR ERVL 276 417 -25 5 1362 287 309 7 7 chr12 101863452 101863592 -19393938 - L1M4b LINE L1 -3782 3552 3413 5 1362 31 0 0 0 chr12 101863694 101863725 -19393805 + AT_rich Low_complexity Low_complexity 1 31 0 5 1362 916 302 79 30 chr12 101863848 101864176 -19393354 + MER2 DNA MER2_type 1 344 -1 5 1362 374 287 34 17 chr12 101864353 101864470 -19393060 - PB1D7 SINE Alu -1 119 1 5 1362 341 321 23 0 chr12 101864471 101864602 -19392928 - L1M4b LINE L1 -6021 1313 1180 5 1362 773 257 30 0 chr12 101864616 101864818 -19392712 - L1M4b LINE L1 -6220 1114 907 5 1362 324 262 119 14 chr12 101864889 101865032 -19392498 - L1M4b LINE L1 -6565 769 612 5 1362 514 224 20 82 chr12 101865380 101865526 -19392004 + B4A SINE B4 9 145 -147 5 1362 252 263 41 21 chr12 101866882 101866979 -19390551 - L1MC4a LINE L1 -280 7602 7504 5 1362 308 379 16 52 chr12 101867025 101867217 -19390313 - L1MC4a LINE L1 -458 7424 7240 5 1362 232 200 0 44 chr12 101867220 101867288 -19390242 - L1MC4a LINE L1 -949 7093 7029 5 1362 387 267 8 91 chr12 101868149 101868186 -19389344 - B1_Mur3 SINE Alu -23 126 97 5 1362 273 57 0 0 chr12 101868186 101868221 -19389309 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1362 437 222 11 43 chr12 101868221 101868315 -19389215 - PB1D9 SINE Alu -24 96 6 5 1362 486 319 94 0 chr12 101868373 101868533 -19388997 - B3A SINE B2 -22 176 2 5 1362 206 219 0 0 chr12 101868960 101869001 -19388529 + (CATA)n Simple_repeat Simple_repeat 3 43 0 5 1362 354 333 64 14 chr12 101869377 101869517 -19388013 + B1F SINE Alu 1 147 -2 5 1362 396 108 14 0 chr12 101870658 101870732 -19386798 - L1_Mur3 LINE L1 -2734 3146 3072 5 1362 1105 127 92 14 chr12 101870729 101870844 -19386686 - Lx2 LINE L1 0 6997 6867 5 1362 189 0 0 0 chr12 101870844 101870865 -19386665 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 5 1362 1105 127 92 14 chr12 101870865 101870956 -19386574 - Lx2 LINE L1 -131 6866 6775 5 1362 2936 96 20 7 chr12 101870954 101871393 -19386137 - Lx2 LINE L1 -353 6644 6200 5 1362 4125 159 87 68 chr12 101871393 101872337 -19385193 - RMER19B LTR ERVK -6 896 20 5 1362 576 275 0 16 chr12 101872460 101872582 -19384948 - B1F1 SINE Alu -27 122 3 5 1362 252 379 40 45 chr12 101872826 101873050 -19384480 + L4 LINE RTE 1286 1508 -521 5 1362 448 305 184 33 chr12 101873330 101873971 -19383559 - L1MC4 LINE L1 -98 7944 7207 5 1362 235 189 19 0 chr12 101874038 101874091 -19383439 - L1MC4 LINE L1 -1132 6910 6857 5 1362 199 269 45 0 chr12 101874122 101874189 -19383341 - MIR SINE MIR -26 236 167 5 1362 226 230 42 84 chr12 101874586 101874681 -19382849 + ORR1E LTR MaLR 102 192 -167 5 1362 1220 88 5 72 chr12 101875593 101875608 -19381922 - B2_Mm2 SINE B2 0 195 183 5 1362 1197 29 14 0 chr12 101875608 101875748 -19381782 - B1_Mm SINE Alu -5 142 1 5 1362 1220 88 5 72 chr12 101875748 101875941 -19381589 - B2_Mm2 SINE B2 -13 182 1 5 1362 339 250 89 10 chr12 101875951 101876052 -19381478 + B3A SINE B2 43 151 -47 5 1362 1400 228 66 27 chr12 101876125 101876490 -19381040 - MTE2a LTR MaLR 0 379 1 5 1362 1614 285 101 18 chr12 101876651 101877334 -19380196 + Lx8 LINE L1 6495 7234 -239 5 1362 324 241 51 0 chr12 101877754 101877833 -19379697 - U6 snRNA snRNA -24 83 1 5 1362 875 286 14 29 chr12 101878951 101879228 -19378302 + B4A SINE B4 2 274 -18 5 1362 450 0 0 0 chr12 101879237 101879287 -19378243 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1362 252 308 243 39 chr12 101879309 101879491 -19378039 + MER58A DNA MER1_type 1 219 -5 5 1362 332 329 95 74 chr12 101880368 101880751 -19376779 + L1M2 LINE L1 4804 5202 -944 5 1362 333 358 42 31 chr12 101880803 101880996 -19376534 + L1MC LINE L1 5297 5491 -2391 5 1362 2480 87 6 8 chr12 101880997 101881355 -19376175 + L1_Mus4 LINE L1 6280 6636 0 5 1362 246 312 62 0 chr12 101881497 101881609 -19375921 + L1MC LINE L1 5733 5851 -2031 5 1362 1634 135 4 0 chr12 101881915 101882167 -19375363 - Lx LINE L1 -205 5678 5426 5 1362 6103 94 50 11 chr12 101882166 101883109 -19374421 + Lx LINE L1 5675 6654 0 5 1362 1739 154 32 97 chr12 101883665 101884076 -19373454 - ORR1C2 LTR MaLR 0 384 1 5 1362 27 0 0 0 chr12 101884097 101884124 -19373406 + AT_rich Low_complexity Low_complexity 1 27 0 5 1362 373 274 47 9 chr12 101884209 101884316 -19373214 - Tigger5 DNA MER2_type -5 2401 2291 5 1362 526 336 99 22 chr12 101884312 101884534 -19372996 - Tigger5 DNA MER2_type -2164 242 4 5 1362 25 0 0 0 chr12 101884720 101884745 -19372785 + AT_rich Low_complexity Low_complexity 1 25 0 5 1362 748 246 187 26 chr12 101884773 101885078 -19372452 + MLT1B LTR MaLR 25 378 -12 5 1362 441 123 85 0 chr12 101885666 101885772 -19371758 + Lx7 LINE L1 1594 1708 -4172 5 1362 17192 96 25 2 chr12 101885781 101889052 -19368478 + L1_Mus3 LINE L1 3242 6588 -50 5 1362 435 243 97 35 chr12 101889047 101889273 -19368257 + Lx7 LINE L1 1741 1980 -3900 5 1362 6375 200 80 42 chr12 101889272 101891249 -19366281 + Lx7 LINE L1 4085 6147 -1549 5 1362 203 394 0 0 chr12 101891585 101891656 -19365874 + MIRb SINE MIR 5 75 -193 5 1362 313 261 43 14 chr12 101893131 101893236 -19364294 - PB1D10 SINE Alu 0 117 10 5 1362 231 222 0 0 chr12 101893236 101893290 -19364240 + (TTA)n Simple_repeat Simple_repeat 1 54 0 5 1362 691 294 87 15 chr12 101893380 101893646 -19363884 - B4A SINE B4 -6 286 2 5 1362 247 268 14 14 chr12 101893974 101894046 -19363484 + GA-rich Low_complexity Low_complexity 5 76 0 5 1362 204 254 80 87 chr12 101894368 101894506 -19363024 - MIRb SINE MIR -36 232 96 5 1362 242 0 61 0 chr12 101895323 101895356 -19362174 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 5 1362 292 333 43 14 chr12 101895396 101895536 -19361994 - MIR SINE MIR -36 226 83 5 1362 2694 142 10 8 chr12 101895624 101896106 -19361424 + Lx5 LINE L1 4968 5450 -427 5 1362 2289 78 15 47 chr12 101896108 101896388 -19361142 + ORR1A2 LTR MaLR 1 285 -42 5 1362 2265 33 29 0 chr12 101896388 101896663 -19360867 + L1Md_F3 LINE L1 6302 6584 0 5 1362 2289 78 15 47 chr12 101896663 101896720 -19360810 + ORR1A2 LTR MaLR 286 327 0 5 1362 7918 161 23 8 chr12 101896720 101898288 -19359242 + Lx5 LINE L1 5447 7050 0 5 1362 31 44 0 0 chr12 101898333 101898378 -19359152 + AT_rich Low_complexity Low_complexity 1 45 0 6 1362 605 208 64 13 chr12 101900690 101900846 -19356684 - MTE2b LTR MaLR 0 379 216 6 1362 332 317 19 9 chr12 101901355 101901460 -19356070 + RSINE1 SINE B4 59 164 -1 6 1362 467 246 90 0 chr12 101901568 101901702 -19355828 - RSINE1 SINE B4 -17 148 3 6 1362 1364 171 10 0 chr12 101901734 101901939 -19355591 - B3 SINE B2 -9 207 1 6 1362 220 191 0 21 chr12 101902180 101902213 -19355317 + polypyrimidine Low_complexity Low_complexity 17 48 0 6 1362 875 102 72 7 chr12 101902213 101902351 -19355179 - B1_Mm SINE Alu 0 147 1 6 1362 220 191 0 21 chr12 101902351 101902365 -19355165 + polypyrimidine Low_complexity Low_complexity 3 16 0 6 1362 282 341 93 0 chr12 101902439 101902568 -19354962 + MIR SINE MIR 2 142 -126 6 1362 1134 81 0 0 chr12 101902671 101902819 -19354711 + B1_Mus1 SINE Alu 1 148 0 6 1362 2460 270 78 30 chr12 101902952 101903849 -19353681 + Lx8 LINE L1 6311 7250 -223 6 1362 648 0 0 0 chr12 101903915 101903987 -19353543 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1362 281 325 171 8 chr12 101904365 101904427 -19353103 + LTR16A1 LTR ERVL 156 223 -233 6 1362 2706 150 36 30 chr12 101904427 101904929 -19352601 + Lx2B LINE L1 6496 7000 0 6 1362 281 325 171 8 chr12 101904929 101905105 -19352425 + LTR16A1 LTR ERVL 224 433 -23 6 1362 189 0 0 0 chr12 101905657 101905678 -19351852 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 6 1362 279 319 55 0 chr12 101905720 101905811 -19351719 - L2 LINE L2 -566 2853 2758 6 1362 226 324 40 13 chr12 101905880 101905955 -19351575 - ZP3AR Satellite Satellite -120 92 16 6 1362 344 267 35 0 chr12 101906744 101906830 -19350700 + B1F SINE Alu 52 140 -9 6 1362 294 234 65 0 chr12 101906843 101906920 -19350610 + ID2 SINE ID 2 83 0 6 1362 21 0 0 0 chr12 101907002 101907023 -19350507 + AT_rich Low_complexity Low_complexity 1 21 0 6 1362 270 0 0 0 chr12 101907313 101907343 -19350187 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1362 361 209 300 0 chr12 101907830 101907940 -19349590 - B1_Mur2 SINE Alu -5 144 2 6 1362 270 261 97 21 chr12 101908101 101908246 -19349284 - L1MEd LINE L1 -4427 1722 1567 6 1362 1340 239 21 7 chr12 101908250 101908537 -19348993 + B4 SINE B4 1 291 -1 6 1362 203 302 0 0 chr12 101908539 101908592 -19348938 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1362 983 281 112 10 chr12 101908734 101909126 -19348404 + Lx6 LINE L1 7024 7455 -5 6 1362 21 0 0 0 chr12 101909545 101909566 -19347964 + GC_rich Low_complexity Low_complexity 1 21 0 6 1362 1164 43 0 0 chr12 101909566 101909705 -19347825 - B1_Mus1 SINE Alu -9 139 1 6 1362 333 118 0 0 chr12 101909797 101909848 -19347682 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1362 481 254 148 7 chr12 101909849 101909984 -19347546 - B3A SINE B2 -44 154 1 6 1362 387 0 0 0 chr12 101910076 101910119 -19347411 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1362 287 292 42 0 chr12 101910128 101910200 -19347330 - B1F1 SINE Alu -62 87 13 6 1362 237 288 68 14 chr12 101910239 101910294 -19347236 - B3 SINE B2 -12 204 145 6 1362 756 200 15 7 chr12 101910294 101910430 -19347100 - B1_Mur2 SINE Alu -8 141 5 6 1362 237 288 68 14 chr12 101910430 101910448 -19347082 - B3 SINE B2 -72 144 127 6 1362 1254 27 0 0 chr12 101910503 101910650 -19346880 + B1_Mus2 SINE Alu 1 147 0 6 1362 397 261 61 24 chr12 101910660 101910825 -19346705 + L1MA7 LINE L1 6093 6263 -28 6 1362 407 285 92 0 chr12 101911136 101911199 -19346331 + B4A SINE B4 151 222 -70 6 1362 815 62 0 17 chr12 101911199 101911314 -19346216 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 6 1362 407 285 92 0 chr12 101911314 101911380 -19346150 + B4A SINE B4 223 291 -1 6 1362 314 296 42 62 chr12 101911804 101911948 -19345582 - L1MEd LINE L1 -5974 145 5 6 1362 382 305 70 54 chr12 101912410 101912640 -19344890 + MTEa LTR MaLR 125 379 0 6 1362 21 36 0 0 chr12 101912773 101912801 -19344729 + AT_rich Low_complexity Low_complexity 1 28 0 6 1362 460 261 30 55 chr12 101912918 101913044 -19344486 + B1_Mur1 SINE Alu 19 149 0 6 1362 375 308 182 10 chr12 101913286 101913591 -19343939 + MER54B LTR ERVL 438 793 0 6 1362 1365 269 107 29 chr12 101913936 101914202 -19343328 + L1MB7 LINE L1 5470 5744 -440 6 1362 870 257 42 62 chr12 101914202 101914588 -19342942 - MTE2a LTR MaLR 0 379 2 6 1362 1365 269 112 30 chr12 101914588 101914972 -19342558 + L1MB7 LINE L1 5745 6172 -12 6 1362 227 253 116 42 chr12 101916493 101916588 -19340942 - PB1 SINE Alu -5 122 21 6 1362 739 138 14 71 chr12 101916968 101917108 -19340422 + B1_Mus1 SINE Alu 5 136 -12 6 1362 494 15 46 0 chr12 101917108 101917173 -19340357 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 6 1362 194 357 42 28 chr12 101917335 101917479 -19340051 + MIR3 SINE MIR 49 194 -14 6 1362 252 200 16 16 chr12 101917951 101918012 -19339518 + L1ME2z LINE L1 6230 6290 -154 6 1362 279 292 10 50 chr12 101918103 101918204 -19339326 + MIR SINE MIR 136 232 -30 6 1362 1969 116 47 111 chr12 101918237 101918662 -19338868 + RMER10B LTR ERVL 1 398 0 6 1362 39 22 0 0 chr12 101918759 101918805 -19338725 + AT_rich Low_complexity Low_complexity 1 46 0 6 1362 1051 183 196 73 chr12 101918876 101919218 -19338312 + ORR1C2 LTR MaLR 1 384 0 6 1362 2524 115 30 43 chr12 101919907 101920344 -19337186 + Lx3C LINE L1 6545 6975 -1 6 1362 435 336 20 0 chr12 101920403 101920552 -19336978 - RSINE1 SINE B4 -12 153 2 6 1362 240 35 0 0 chr12 101920693 101920722 -19336808 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 6 1362 21 0 0 0 chr12 101921664 101921685 -19335845 + AT_rich Low_complexity Low_complexity 1 21 0 6 1362 503 198 31 0 chr12 101921725 101921821 -19335709 + B1F2 SINE Alu 42 140 -9 6 1362 207 69 0 0 chr12 101921901 101921930 -19335600 + (CCCCCA)n Simple_repeat Simple_repeat 4 32 0 6 1362 536 207 64 0 chr12 101921943 101922083 -19335447 - Lx7 LINE L1 -584 7112 6964 6 1362 1283 14 0 0 chr12 101922221 101922367 -19335163 + B1_Mus2 SINE Alu 2 147 0 6 1362 420 282 78 0 chr12 101922645 101922748 -19334782 + PB1D7 SINE Alu 1 111 -9 6 1362 1010 277 130 37 chr12 101922888 101923540 -19333990 - L1MB2 LINE L1 -12 6159 5447 6 1362 22 0 0 0 chr12 101923590 101923612 -19333918 + AT_rich Low_complexity Low_complexity 1 22 0 6 1362 786 251 20 40 chr12 101923672 101923871 -19333659 + B3A SINE B2 4 198 0 6 1362 1193 48 7 0 chr12 101924099 101924245 -19333285 - B1_Mm SINE Alu 0 147 1 6 1362 287 346 0 36 chr12 101924726 101924810 -19332720 + ID4_ SINE ID 2 82 -1 6 1362 394 248 15 52 chr12 101925326 101925462 -19332068 + L1_Rod LINE L1 5501 5631 -216 6 1362 943 236 195 7 chr12 101925477 101925505 -19332025 + MLT1A0 LTR MaLR 2 29 -336 6 1362 180 0 0 0 chr12 101925505 101925525 -19332005 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1362 943 236 195 7 chr12 101925525 101925799 -19331731 + MLT1A0 LTR MaLR 30 360 -5 6 1362 234 0 0 0 chr12 101926025 101926051 -19331479 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1362 673 254 20 122 chr12 101926254 101926509 -19331021 + MTE2a LTR MaLR 119 347 -32 6 1362 1536 297 112 13 chr12 101926526 101927365 -19330165 - ERVL-B4-int LTR ERVL -1363 4351 3430 6 1362 344 302 84 21 chr12 101927365 101927507 -19330023 - MLT2B4 LTR ERVL -388 168 18 6 1362 1207 83 0 0 chr12 101927530 101927687 -19329843 + B2_Mm2 SINE B2 1 157 -38 6 1362 203 24 122 0 chr12 101927698 101927739 -19329791 + (TTAA)n Simple_repeat Simple_repeat 2 47 0 6 1362 197 182 0 18 chr12 101927740 101927796 -19329734 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 6 1362 462 269 99 9 chr12 101927857 101928003 -19329527 + ID_B1 SINE B4 68 222 -2 6 1362 939 67 97 0 chr12 101928111 101928245 -19329285 - B1_Mus1 SINE Alu 0 148 2 6 1362 26 30 0 0 chr12 101929330 101929363 -19328167 + AT_rich Low_complexity Low_complexity 1 33 0 6 1362 383 322 163 53 chr12 101931107 101931481 -19326049 - MER47B DNA MER2_type -2 416 2 6 1362 250 298 74 0 chr12 101931725 101931846 -19325684 - L1MC4a LINE L1 -516 7366 7237 6 1362 1906 117 39 70 chr12 101931856 101932187 -19325343 - ORR1A4 LTR MaLR -8 321 1 6 1362 1366 87 16 5 chr12 101932854 101933039 -19324491 - B2_Mm2 SINE B2 -8 187 1 6 1362 204 40 0 0 chr12 101933051 101933076 -19324454 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1362 1193 56 0 0 chr12 101933078 101933222 -19324308 - B1_Mus2 SINE Alu -1 146 3 6 1362 500 333 7 0 chr12 101933608 101933752 -19323778 + RSINE1 SINE B4 4 148 -17 6 1362 291 355 79 62 chr12 101934719 101934959 -19322571 - MLT1I LTR MaLR -54 357 114 6 1362 233 139 23 0 chr12 101935179 101935222 -19322308 + L1M2 LINE L1 5235 5278 -865 6 1362 851 267 13 31 chr12 101935411 101935635 -19321895 - ID_B1 SINE B4 -2 222 3 6 1362 274 266 16 21 chr12 101935684 101935771 -19321759 + B1_Mur1 SINE Alu 9 120 -29 6 1362 372 275 73 9 chr12 101935834 101936054 -19321476 + L1ME3B LINE L1 5640 5873 -367 6 1362 1377 153 58 40 chr12 101936126 101936452 -19321078 + MYSERV6-int LTR ERVK 8050 8381 -578 6 1362 2272 210 45 9 chr12 101936444 101936972 -19320558 + MYSERV-int LTR ERVK 6002 6548 -2 6 1362 280 213 63 51 chr12 101936973 101937052 -19320478 + RLTR11B LTR ERVK 1 80 -373 6 1362 845 222 78 11 chr12 101937056 101937247 -19320283 + MTD LTR MaLR 211 414 -5 6 1362 2076 266 112 60 chr12 101937256 101938296 -19319234 + MTD-int LTR MaLR 4 1098 0 6 1362 1963 194 14 56 chr12 101938298 101938724 -19318806 + MTD LTR MaLR 3 410 -9 6 1362 746 11 11 0 chr12 101938780 101938871 -19318659 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 6 1362 471 301 171 13 chr12 101939032 101939190 -19318340 + B3 SINE B2 1 183 -33 6 1362 471 78 0 0 chr12 101939193 101939257 -19318273 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1362 283 184 157 0 chr12 101939681 101939760 -19317770 + PB1D10 SINE Alu 6 112 -8 6 1362 216 0 0 0 chr12 101940245 101940269 -19317261 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1362 1131 174 27 27 chr12 101941245 101941469 -19316061 + URR1B DNA MER1_type 2 225 0 7 1362 424 241 68 16 chr12 101942366 101942556 -19314974 + L1MC4 LINE L1 801 1000 -5215 7 1362 420 97 0 0 chr12 101942902 101942964 -19314566 + (TGGA)n Simple_repeat Simple_repeat 1 62 0 7 1362 524 388 88 50 chr12 101942996 101943419 -19314111 - LTR16E2 LTR ERVL 0 538 100 7 1362 764 338 119 25 chr12 101944556 101945111 -19312419 - MLT2F LTR ERVL -26 637 31 7 1362 246 394 170 27 chr12 101945578 101945878 -19311652 - LTR16E1 LTR ERVL -51 487 145 7 1362 1099 162 96 24 chr12 101945955 101946292 -19311238 + RLTR16 LTR ERVK 4 404 -101 7 1362 7078 102 48 9 chr12 101946292 101947702 -19309828 + Lx LINE L1 5158 6618 -36 7 1362 522 0 0 0 chr12 101947702 101947760 -19309770 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1362 540 214 0 0 chr12 101947772 101947875 -19309655 + RLTR16 LTR ERVK 391 493 -12 7 1362 408 20 0 0 chr12 101948041 101948090 -19309440 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1362 180 0 0 0 chr12 101949729 101949749 -19307781 + (CTAAA)n Simple_repeat Simple_repeat 3 22 0 7 1362 252 386 49 6 chr12 101950735 101950899 -19306631 + MIRb SINE MIR 38 208 -60 7 1362 700 349 118 30 chr12 101951124 101951555 -19305975 + MLT1E2 LTR MaLR 55 523 -104 7 1362 240 35 0 0 chr12 101952918 101952947 -19304583 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1362 504 0 0 0 chr12 101952947 101953002 -19304528 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1362 358 254 33 8 chr12 101953188 101953292 -19304238 + B1F1 SINE Alu 13 118 -2 7 1362 675 275 209 48 chr12 101953546 101953981 -19303549 - MLT1D LTR MaLR 0 505 1 7 1362 198 0 0 0 chr12 101954210 101954232 -19303298 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1362 277 206 132 0 chr12 101954647 101954715 -19302815 + B4A SINE B4 3 79 -213 7 1362 513 211 100 50 chr12 101954722 101954862 -19302668 + B1_Mur2 SINE Alu 3 149 0 7 1362 258 227 0 0 chr12 101954862 101954937 -19302593 + A-rich Low_complexity Low_complexity 1 75 0 7 1362 251 289 75 3 chr12 101954940 101955057 -19302473 + B4 SINE B4 92 215 -77 7 1362 284 374 24 31 chr12 101955996 101956123 -19301407 - MIR3 SINE MIR -47 161 36 7 1362 2623 248 120 78 chr12 101956227 101957785 -19299745 + L1MB7 LINE L1 3678 5300 -846 7 1362 333 167 10 176 chr12 101957793 101957895 -19299635 + B1_Mur1 SINE Alu 57 141 -8 7 1362 1344 277 151 16 chr12 101957914 101958674 -19298856 + L1MB7 LINE L1 5296 6158 -26 7 1362 493 290 20 14 chr12 101958683 101958830 -19298700 + MLT1F LTR MaLR 140 287 -261 7 1362 731 241 158 11 chr12 101958980 101959253 -19298277 - Lx9 LINE L1 -47 7597 7285 7 1362 190 306 48 0 chr12 101959793 101959855 -19297675 + MIRm SINE MIR 212 276 0 7 1362 24 67 0 0 chr12 101959947 101959992 -19297538 + AT_rich Low_complexity Low_complexity 1 45 0 7 1362 195 274 143 0 chr12 101960210 101960294 -19297236 - L2c LINE L2 -4 3383 3288 7 1362 431 327 69 66 chr12 101960344 101960632 -19296898 - B4A SINE B4 -3 289 1 7 1362 186 83 222 0 chr12 101960851 101960887 -19296643 - L2a LINE L2 -5 3421 3378 7 1362 376 275 25 8 chr12 101960923 101961044 -19296486 - MIRc SINE MIR -116 152 30 7 1362 180 125 0 0 chr12 101962563 101962595 -19294935 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1362 23 54 0 0 chr12 101962871 101962908 -19294622 + GC_rich Low_complexity Low_complexity 1 37 0 7 1362 210 192 0 0 chr12 101963026 101963078 -19294452 + (CCG)n Simple_repeat Simple_repeat 2 53 0 7 1362 391 239 136 8 chr12 101963913 101964031 -19293499 + RSINE1 SINE B4 2 134 -31 7 1362 524 287 24 18 chr12 101964173 101964340 -19293190 - ID_B1 SINE B4 -55 169 2 7 1362 278 69 13 77 chr12 101964743 101964821 -19292709 + A-rich Low_complexity Low_complexity 2 74 0 7 1362 964 148 0 0 chr12 101964848 101964990 -19292540 + B1_Mur3 SINE Alu 4 145 -4 7 1362 864 237 130 15 chr12 101965030 101965300 -19292230 - MTEa LTR MaLR -74 305 5 7 1362 668 289 97 14 chr12 101965577 101965865 -19291665 - MER58B DNA MER1_type -1 340 29 7 1362 800 113 0 0 chr12 101965907 101966031 -19291499 + B2_Mm2 SINE B2 1 124 -71 7 1362 1353 191 84 51 chr12 101966037 101966428 -19291102 - RLTR9F LTR ERVK -11 404 1 7 1362 358 105 0 0 chr12 101966428 101966485 -19291045 + B2_Mm1a SINE B2 118 174 -19 7 1362 942 136 11 6 chr12 101966485 101966499 -19291031 + polypurine Low_complexity Low_complexity 1 14 0 7 1362 1114 102 11 0 chr12 101966499 101966675 -19290855 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 7 1362 942 136 11 6 chr12 101966675 101966837 -19290693 + GA-rich Low_complexity Low_complexity 15 177 0 7 1362 320 356 54 8 chr12 101966997 101967127 -19290403 - L2b LINE L2 0 3375 3240 7 1362 764 160 28 7 chr12 101967575 101967720 -19289810 - B1_Mur2 SINE Alu 0 149 2 7 1362 678 134 12 24 chr12 101968138 101968306 -19289224 + (TG)n Simple_repeat Simple_repeat 1 166 0 7 1362 300 340 54 7 chr12 101968554 101968702 -19288828 - B4A SINE B4 -117 175 21 7 1362 201 289 12 50 chr12 101969285 101969365 -19288165 - MER5B DNA MER1_type -91 87 11 7 1362 424 311 83 97 chr12 101969502 101970019 -19287511 - RLTR11A2 LTR ERVK -8 519 10 7 1362 347 342 102 45 chr12 101970572 101970671 -19286859 + ORR1E LTR MaLR 1 101 -258 7 1362 1536 121 9 0 chr12 101970671 101970894 -19286636 + URR1B DNA MER1_type 1 225 0 7 1362 347 342 102 45 chr12 101970894 101971128 -19286402 + ORR1E LTR MaLR 102 353 -6 7 1362 204 111 0 0 chr12 101971743 101971779 -19285751 + (G)n Simple_repeat Simple_repeat 1 36 0 7 1362 258 219 256 16 chr12 101972204 101972325 -19285205 + MER113 DNA MER1_type 167 316 -205 7 1362 412 250 21 0 chr12 101972326 101972422 -19285108 + B1_Mur2 SINE Alu 47 144 -5 7 1362 787 141 20 0 chr12 101972422 101972517 -19285013 + polypurine Low_complexity Low_complexity 1 98 0 7 1362 1275 89 0 0 chr12 101972517 101972696 -19284834 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 7 1362 787 141 20 0 chr12 101972696 101972749 -19284781 + polypurine Low_complexity Low_complexity 99 151 0 7 1362 627 281 25 12 chr12 101973086 101973305 -19284225 - B3A SINE B2 0 216 3 7 1363 484 230 17 17 chr12 101974085 101974200 -19283330 + B1_Mur1 SINE Alu 8 122 -27 7 1363 245 51 26 0 chr12 101974819 101974858 -19282672 + (TAAAAA)n Simple_repeat Simple_repeat 3 42 0 7 1363 259 288 113 62 chr12 101975251 101975543 -19281987 + HAL1b LINE L1 1269 1575 -434 7 1363 670 200 7 41 chr12 101975543 101975689 -19281841 + B1_Mur1 SINE Alu 3 143 -6 7 1363 366 143 0 0 chr12 101975717 101975780 -19281750 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 7 1363 357 82 0 0 chr12 101975910 101975959 -19281571 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1363 349 316 63 123 chr12 101975961 101976183 -19281347 + B4 SINE B4 3 203 -89 7 1363 968 117 7 0 chr12 101976183 101976337 -19281193 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 7 1363 349 316 63 123 chr12 101976337 101976399 -19281131 + B4 SINE B4 204 270 -22 7 1363 24 32 0 0 chr12 101976541 101976572 -19280958 + AT_rich Low_complexity Low_complexity 1 31 0 7 1363 207 211 0 19 chr12 101976693 101976746 -19280784 + A-rich Low_complexity Low_complexity 2 53 0 7 1363 210 186 23 0 chr12 101976801 101976844 -19280686 + CT-rich Low_complexity Low_complexity 2 45 0 7 1363 322 237 0 13 chr12 101976900 101976977 -19280553 - ID SINE ID -142 82 7 7 1363 589 353 35 17 chr12 101977432 101977778 -19279752 - HAL1 LINE L1 -747 1760 1409 7 1363 417 176 0 27 chr12 101977871 101977982 -19279548 + CT-rich Low_complexity Low_complexity 1 108 0 7 1363 195 42 0 0 chr12 101978107 101978131 -19279399 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1363 195 194 14 43 chr12 101978211 101978281 -19279249 + CT-rich Low_complexity Low_complexity 3 70 0 7 1363 494 220 37 0 chr12 101978330 101978439 -19279091 - PB1D10 SINE Alu 0 117 5 7 1363 1187 169 20 20 chr12 101978952 101979200 -19278330 - Lx7 LINE L1 0 7696 7449 7 1363 2644 54 0 12 chr12 101979208 101979545 -19277985 + L1Md_F2 LINE L1 6249 6581 -1 7 1363 967 237 0 33 chr12 101979565 101979809 -19277721 - Lx7 LINE L1 -217 7479 7244 7 1363 1134 96 0 12 chr12 101979809 101979978 -19277552 + B2_Mm2 SINE B2 2 168 -27 7 1363 3463 204 35 25 chr12 101980050 101980794 -19276736 - Lx7 LINE L1 -437 7259 6509 7 1363 265 321 28 28 chr12 101981269 101981378 -19276152 + MIRc SINE MIR 101 209 -59 7 1363 245 280 95 36 chr12 101981966 101982103 -19275427 + L1M5 LINE L1 5679 5823 -301 7 1363 28 0 0 0 chr12 101983597 101983625 -19273905 + AT_rich Low_complexity Low_complexity 1 28 0 7 1363 880 144 7 20 chr12 101983984 101984133 -19273397 + B1_Mus2 SINE Alu 1 147 0 7 1363 678 148 0 0 chr12 101984148 101984263 -19273267 + (GGA)n Simple_repeat Simple_repeat 3 117 0 7 1363 434 181 17 35 chr12 101984411 101984583 -19272947 + (CA)n Simple_repeat Simple_repeat 2 170 0 7 1363 507 160 6 31 chr12 101984600 101984761 -19272769 + (CA)n Simple_repeat Simple_repeat 2 158 0 7 1363 297 293 0 0 chr12 101984860 101984942 -19272588 + PB1D10 SINE Alu 23 104 -13 7 1363 379 299 112 44 chr12 101984999 101985205 -19272325 + MIR SINE MIR 29 248 -14 7 1363 483 250 10 0 chr12 101986351 101986451 -19271079 + ID_B1 SINE B4 113 213 -11 7 1363 543 266 12 2 chr12 101986509 101986649 -19270881 - L1M3 LINE L1 -567 5724 5581 7 1363 591 223 50 0 chr12 101986835 101986956 -19270574 - B3 SINE B2 -88 128 2 7 1363 571 282 14 7 chr12 101987261 101987404 -19270126 + ID_B1 SINE B4 81 224 0 7 1363 2579 147 7 17 chr12 101987509 101987930 -19269600 + MTC LTR MaLR 1 417 -4 7 1363 683 300 108 0 chr12 101988052 101988074 -19269456 - MLT1D LTR MaLR -8 497 476 7 1363 213 39 0 0 chr12 101988074 101988100 -19269430 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1363 683 299 78 17 chr12 101988100 101988518 -19269012 - MLT1D LTR MaLR -30 475 2 7 1363 27 0 0 0 chr12 101989465 101989492 -19268038 + AT_rich Low_complexity Low_complexity 1 27 0 7 1363 214 320 13 13 chr12 101989501 101989577 -19267953 + RSINE1 SINE B4 3 78 -87 7 1363 279 0 0 0 chr12 101989640 101989671 -19267859 + (CGGGG)n Simple_repeat Simple_repeat 3 33 0 8 1363 891 94 0 0 chr12 101989822 101989949 -19267581 + (GAAA)n Simple_repeat Simple_repeat 4 130 0 8 1363 26 0 0 0 chr12 101989951 101989977 -19267553 + AT_rich Low_complexity Low_complexity 1 26 0 8 1363 199 305 82 21 chr12 101990249 101990346 -19267184 + L2b LINE L2 3271 3373 -2 8 1363 460 304 69 29 chr12 101990451 101990628 -19266902 - B3A SINE B2 -13 203 20 8 1363 1176 65 12 6 chr12 101990624 101990793 -19266737 - B2_Mm2 SINE B2 -25 170 1 8 1363 181 257 13 91 chr12 101991825 101991902 -19265628 - MIRb SINE MIR -99 169 99 8 1363 183 280 0 0 chr12 101991956 101992006 -19265524 - L2b LINE L2 -1 3374 3325 8 1363 291 277 45 31 chr12 101992115 101992276 -19265254 - L2b LINE L2 -223 3164 2991 8 1363 188 317 0 80 chr12 101992267 101992380 -19265150 - L2a LINE L2 -14 3412 3309 8 1363 775 211 107 47 chr12 101992959 101993323 -19264207 + MTD LTR MaLR 7 419 0 8 1363 327 105 0 0 chr12 101993790 101993847 -19263683 + (CCAA)n Simple_repeat Simple_repeat 2 58 0 8 1363 1227 109 23 0 chr12 101994071 101994246 -19263284 + B2_Mm2 SINE B2 3 181 -14 8 1363 389 77 0 0 chr12 101994293 101994358 -19263172 + B2_Mm1t SINE B2 129 193 0 8 1363 1116 104 38 11 chr12 101994580 101994765 -19262765 + B2_Mm2 SINE B2 2 191 -4 8 1363 2122 333 73 79 chr12 101995409 101995987 -19261543 + MTE-int LTR MaLR 144 753 -827 8 1363 360 0 0 0 chr12 101995987 101996027 -19261503 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1363 2122 333 73 79 chr12 101996027 101996393 -19261137 + MTE-int LTR MaLR 754 1108 -472 8 1363 583 331 0 0 chr12 101996393 101996556 -19260974 + RSINE1 SINE B4 3 165 0 8 1363 2122 333 73 79 chr12 101996556 101997010 -19260520 + MTE-int LTR MaLR 1109 1535 -45 8 1363 513 0 0 0 chr12 101997621 101997678 -19259852 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1363 932 47 8 0 chr12 101998620 101998748 -19258782 - B1_Mus2 SINE Alu -13 134 6 8 1363 241 284 0 0 chr12 101998970 101999037 -19258493 - Charlie23a DNA MER1_type -159 180 114 8 1363 257 300 49 12 chr12 101999616 101999697 -19257833 + RSINE1 SINE B4 68 151 -14 8 1363 492 32 0 0 chr12 101999701 101999763 -19257767 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1363 648 288 83 13 chr12 101999771 102000000 -19257530 + L1MB5 LINE L1 5869 6113 -61 8 1363 924 156 0 0 chr12 102000249 102000429 -19257101 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1363 912 175 0 0 chr12 102000463 102000820 -19256710 + (TG)n Simple_repeat Simple_repeat 1 357 0 1 1363 686 251 112 30 chr12 102002096 102002363 -19255167 + B4A SINE B4 1 289 -3 2 1363 341 291 75 25 chr12 102002486 102002606 -19254924 - MER63C DNA AcHobo -800 130 5 3 1363 2127 172 41 13 chr12 102003430 102003819 -19253711 - MTC LTR MaLR -8 413 14 4 1363 24 32 0 0 chr12 102003881 102003912 -19253618 + AT_rich Low_complexity Low_complexity 1 31 0 5 1363 362 304 47 13 chr12 102003934 102004126 -19253404 + MIR3 SINE MIR 9 197 -11 6 1363 299 215 114 0 chr12 102004703 102004782 -19252748 + MER5A DNA MER1_type 59 146 -43 7 1363 305 329 80 53 chr12 102004837 102004988 -19252542 - HAL1-3A_ME LINE L1 -421 2437 2283 8 1363 12922 35 1 1 chr12 102005030 102007232 -19250298 - L1Md_F2 LINE L1 -2 6580 4380 9 1363 937 19 9 0 chr12 102007232 102007338 -19250192 - U6 snRNA snRNA 0 107 1 1 1363 773 103 8 8 chr12 102007393 102007511 -19250019 - B1_Mus1 SINE Alu -18 130 13 1 1363 341 304 54 58 chr12 102007511 102007752 -19249778 - L1MB1 LINE L1 -32 6136 5897 1 1363 233 260 118 20 chr12 102008263 102008365 -19249165 - ORR1A2 LTR MaLR -2 325 214 1 1363 227 390 57 8 chr12 102008495 102008619 -19248911 - ORR1A2 LTR MaLR -224 135 6 1 1363 208 137 57 38 chr12 102009056 102009109 -19248421 + CT-rich Low_complexity Low_complexity 1 54 0 1 1363 519 17 0 0 chr12 102009364 102009424 -19248106 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 1 1363 347 235 314 0 chr12 102009679 102009781 -19247749 + MER20 DNA MER1_type 26 159 -60 1 1363 1245 124 0 0 chr12 102009789 102009967 -19247563 - Lx4A LINE L1 -286 6772 6595 1 1363 1629 121 15 33 chr12 102009967 102010240 -19247290 + Lx4A LINE L1 6786 7053 -5 1 1363 351 0 0 0 chr12 102010240 102010279 -19247251 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1363 227 157 20 0 chr12 102010409 102010460 -19247070 + CT-rich Low_complexity Low_complexity 2 53 0 1 1363 247 231 52 61 chr12 102010582 102010697 -19246833 + MIR SINE MIR 35 148 -114 2 1363 244 351 67 45 chr12 102010893 102011027 -19246503 + MER34A1 LTR ERV1 109 245 -342 2 1363 786 116 0 0 chr12 102011126 102011273 -19246257 + (TC)n Simple_repeat Simple_repeat 2 148 0 2 1363 315 0 0 0 chr12 102011273 102011307 -19246223 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1363 553 243 80 98 chr12 102011307 102011582 -19245948 - B4A SINE B4 -20 272 2 2 1363 246 207 17 0 chr12 102011674 102011732 -19245798 + L1MB8 LINE L1 6120 6178 0 2 1363 925 255 40 81 chr12 102011741 102011949 -19245581 + B4 SINE B4 1 214 -78 2 1363 760 228 0 20 chr12 102011949 102012101 -19245429 - B1_Mur2 SINE Alu 0 149 1 2 1363 925 255 40 81 chr12 102012101 102012165 -19245365 + B4 SINE B4 215 262 -30 2 1363 1477 65 0 16 chr12 102012165 102012354 -19245176 + B2_Mm2 SINE B2 2 187 -8 2 1363 467 33 16 0 chr12 102012374 102012435 -19245095 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1363 633 234 22 7 chr12 102012496 102012634 -19244896 + B1_Mur1 SINE Alu 2 141 -8 3 1363 482 282 148 0 chr12 102012781 102012923 -19244607 - RSINE1 SINE B4 0 165 3 3 1363 261 341 80 65 chr12 102012992 102013268 -19244262 - L2a LINE L2 -20 3406 3127 3 1363 998 222 28 0 chr12 102013281 102013493 -19244037 - ID_B1 SINE B4 -4 220 3 3 1363 507 123 0 0 chr12 102013518 102013599 -19243931 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 3 1363 339 263 13 0 chr12 102013608 102013684 -19243846 - ID4_ SINE ID -5 78 2 3 1363 291 253 99 0 chr12 102013948 102014039 -19243491 + MER96B DNA hAT 264 363 -54 3 1363 198 0 0 0 chr12 102014893 102014915 -19242615 + (TGG)n Simple_repeat Simple_repeat 1 22 0 3 1363 450 304 100 13 chr12 102014942 102015092 -19242438 - MLT1A LTR MaLR -195 179 17 3 1363 576 261 118 27 chr12 102015632 102015822 -19241708 - L1MB4 LINE L1 -80 6100 5901 3 1363 2123 96 36 63 chr12 102015822 102016157 -19241373 + ORR1A3 LTR MaLR 1 326 0 4 1363 576 261 118 27 chr12 102016157 102016187 -19241343 - L1MB4 LINE L1 -280 5900 5861 3 1363 669 261 26 45 chr12 102016187 102016384 -19241146 - MLT1A0 LTR MaLR 0 390 193 4 1363 187 369 24 24 chr12 102016991 102017116 -19240414 + MER5B DNA MER1_type 8 132 -46 4 1363 342 290 48 94 chr12 102018455 102018815 -19238715 - MTEa LTR MaLR 0 379 49 4 1363 1286 270 67 74 chr12 102019215 102019771 -19237759 - RMER13A LTR ERVK 0 860 309 4 1363 272 296 75 60 chr12 102019818 102019951 -19237579 - RMER13A LTR ERVK -773 135 1 4 1363 23 0 0 0 chr12 102020445 102020468 -19237062 + AT_rich Low_complexity Low_complexity 1 23 0 4 1363 506 269 31 31 chr12 102020471 102020632 -19236898 - RSINE1 SINE B4 -4 161 1 4 1363 252 370 34 0 chr12 102020775 102020894 -19236636 + MIRb SINE MIR 131 253 -15 4 1363 446 311 99 79 chr12 102021050 102021406 -19236124 - MLT1J LTR MaLR -114 334 1 4 1363 937 153 11 0 chr12 102021933 102022109 -19235421 + CT-rich Low_complexity Low_complexity 2 179 0 4 1363 246 321 24 0 chr12 102022209 102022293 -19235237 + MTEa LTR MaLR 293 378 -1 5 1363 188 231 26 0 chr12 102022558 102022597 -19234933 - MIRm SINE MIR -15 261 222 5 1363 291 333 0 0 chr12 102023526 102023640 -19233890 + L2 LINE L2 1855 1968 -1451 5 1363 756 160 7 58 chr12 102024025 102024164 -19233366 + B1_Mus1 SINE Alu 3 134 -14 5 1363 567 0 0 0 chr12 102024165 102024228 -19233302 + (CAAAA)n Simple_repeat Simple_repeat 1 63 0 5 1363 562 283 132 148 chr12 102024559 102024924 -19232606 - ORR1E LTR MaLR 0 359 1 5 1363 623 91 37 15 chr12 102025103 102025237 -19232293 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 5 1363 240 35 0 0 chr12 102025238 102025267 -19232263 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1363 637 215 8 0 chr12 102025543 102025673 -19231857 - ID_B1 SINE B4 -12 212 82 5 1363 245 289 17 117 chr12 102025559 102025739 -19231791 - MT2B2 LTR ERVL -313 271 110 5 1363 341 284 0 0 chr12 102026449 102026523 -19231007 + ID4 SINE ID 2 75 -8 6 1363 797 274 0 18 chr12 102026646 102026813 -19230717 + RSINE1 SINE B4 2 165 0 6 1363 296 65 43 0 chr12 102026835 102026881 -19230649 + (CATA)n Simple_repeat Simple_repeat 2 49 0 6 1363 413 337 124 48 chr12 102026901 102027335 -19230195 - MLT1C LTR MaLR 0 467 1 6 1363 26 50 0 0 chr12 102027660 102027700 -19229830 + AT_rich Low_complexity Low_complexity 1 40 0 6 1363 2198 66 3 7 chr12 102027700 102027991 -19229539 - L1Md_F2 LINE L1 0 6582 6293 6 1363 414 39 0 0 chr12 102028728 102028780 -19228750 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1363 900 259 34 13 chr12 102028859 102029094 -19228436 - B4 SINE B4 0 292 53 6 1363 1162 269 86 45 chr12 102029319 102029762 -19227768 - L1MB3 LINE L1 -100 6083 5623 6 1363 862 206 74 79 chr12 102029956 102030172 -19227358 + URR1B DNA MER1_type 7 221 -4 6 1363 449 229 33 4 chr12 102030186 102030326 -19227204 - L1MB3 LINE L1 -785 5395 5255 6 1363 780 11 0 0 chr12 102030411 102030500 -19227030 + (TCTCCC)n Simple_repeat Simple_repeat 6 94 0 7 1363 543 90 0 0 chr12 102030513 102030591 -19226939 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 7 1363 339 25 0 0 chr12 102030593 102030633 -19226897 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 7 1363 625 179 9 32 chr12 102030688 102030818 -19226712 + PB1 SINE Alu 1 124 -3 7 1363 22 0 0 0 chr12 102030839 102030861 -19226669 + AT_rich Low_complexity Low_complexity 1 22 0 7 1363 519 279 149 21 chr12 102030865 102031107 -19226423 + B4 SINE B4 4 276 -16 7 1363 341 252 119 0 chr12 102031184 102031335 -19226195 - L1MB3 LINE L1 -1562 4584 4416 6 1363 327 293 0 0 chr12 102031664 102031739 -19225791 - ID SINE ID -148 76 2 7 1363 255 292 52 65 chr12 102031896 102031965 -19225565 + L1M5 LINE L1 4220 4291 -1855 7 1363 1519 60 0 0 chr12 102031965 102032150 -19225380 - B2_Mm1t SINE B2 -7 186 2 7 1363 255 292 52 65 chr12 102032150 102032234 -19225296 + L1M5 LINE L1 4292 4371 -1775 7 1363 243 287 94 39 chr12 102032234 102032361 -19225169 + MLT1C LTR MaLR 282 415 -52 7 1363 580 234 36 0 chr12 102032439 102032550 -19224980 - RSINE1 SINE B4 -49 116 2 8 1363 327 96 0 0 chr12 102032970 102033022 -19224508 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1363 209 264 0 36 chr12 102033423 102033478 -19224052 + (TATG)n Simple_repeat Simple_repeat 2 54 0 8 1363 799 277 113 51 chr12 102033481 102033755 -19223775 - B4 SINE B4 0 292 2 8 1363 226 255 8 41 chr12 102034055 102034135 -19223395 - MIR SINE MIR -105 171 87 8 1363 210 105 0 0 chr12 102034214 102034252 -19223278 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 8 1363 205 171 0 0 chr12 102034295 102034330 -19223200 + (TGAG)n Simple_repeat Simple_repeat 4 38 0 8 1363 422 324 67 93 chr12 102034330 102034407 -19223123 - B4A SINE B4 0 292 224 8 1363 1350 98 0 20 chr12 102034407 102034605 -19222925 - B2_Mm2 SINE B2 0 195 2 8 1363 422 324 67 93 chr12 102034605 102034827 -19222703 - B4A SINE B4 -69 223 1 8 1363 199 247 101 25 chr12 102034877 102034956 -19222574 - MER5A DNA MER1_type -99 90 6 8 1363 396 257 53 35 chr12 102035021 102035134 -19222396 + PB1D7 SINE Alu 3 117 -3 9 1363 1114 158 113 5 chr12 102035184 102035388 -19222142 - URR1A DNA MER1_type 0 226 1 9 1363 1051 69 0 0 chr12 102035424 102035554 -19221976 + B2_Mm2 SINE B2 1 130 -65 9 1363 40314 28 2 6 chr12 102035555 102041909 -19215621 - L1Md_T LINE L1 -1 6581 257 9 1363 297 0 0 0 chr12 102042086 102042119 -19215411 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1363 401 291 9 43 chr12 102042129 102042244 -19215286 - RSINE1 SINE B4 -52 113 3 9 1363 434 224 27 45 chr12 102042256 102042368 -19215162 - ID_B1 SINE B4 -7 217 108 9 1363 279 324 53 26 chr12 102042859 102042973 -19214557 - MIR SINE MIR -73 189 73 9 1363 492 18 0 0 chr12 102043180 102043237 -19214293 + (TA)n Simple_repeat Simple_repeat 2 58 0 9 1363 271 194 32 0 chr12 102043357 102043419 -19214111 + B4A SINE B4 227 290 -2 9 1363 703 314 106 0 chr12 102043601 102043808 -19213722 + B4A SINE B4 4 232 -60 1 1363 378 107 0 0 chr12 102043808 102043864 -19213666 + (ATGGTG)n Simple_repeat Simple_repeat 1 56 0 1 1363 286 175 15 31 chr12 102043864 102043929 -19213601 + B4A SINE B4 221 284 -8 1 1363 1030 224 128 16 chr12 102044138 102044388 -19213142 - B4A SINE B4 -7 285 8 1 1363 1528 121 9 9 chr12 102044988 102045213 -19212317 - URR1B DNA MER1_type 0 225 1 1 1363 228 35 0 0 chr12 102045321 102045350 -19212180 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1363 744 251 29 15 chr12 102045362 102045568 -19211962 - B3 SINE B2 -7 209 1 1 1363 253 336 14 74 chr12 102045952 102046100 -19211430 - MIR SINE MIR -96 166 28 1 1363 187 322 0 33 chr12 102046497 102046558 -19210972 - MIR SINE MIR -89 173 115 1 1363 250 246 35 17 chr12 102046645 102046703 -19210827 - MIRb SINE MIR -179 89 31 1 1363 1449 74 21 0 chr12 102048285 102048475 -19209055 + B2_Mm2 SINE B2 1 194 -1 1 1363 654 274 146 0 chr12 102049504 102049778 -19207752 - L1MB3 LINE L1 -106 6077 5764 1 1363 219 139 0 0 chr12 102049999 102050035 -19207495 + (ATTG)n Simple_repeat Simple_repeat 4 39 0 1 1363 387 274 133 0 chr12 102050042 102050177 -19207353 - RSINE1 SINE B4 -10 155 3 1 1363 744 247 96 25 chr12 102050198 102050397 -19207133 - B3 SINE B2 -3 213 1 1 1363 410 179 72 21 chr12 102050449 102050546 -19206984 - L1MC4 LINE L1 -1094 6948 6847 1 1363 1130 285 39 57 chr12 102050593 102050976 -19206554 - MTE2b LTR MaLR -3 376 1 1 1363 701 263 16 74 chr12 102051012 102051201 -19206329 - B3 SINE B2 -3 213 36 1 1363 612 40 0 0 chr12 102051334 102051409 -19206121 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1 1363 281 273 19 57 chr12 102051410 102051515 -19206015 + B4A SINE B4 73 173 -119 1 1363 298 213 84 122 chr12 102051424 102051531 -19205999 + MT2B LTR ERVL 156 258 -343 1 1363 676 195 0 16 chr12 102051449 102051574 -19205956 + B1_Mur1 SINE Alu 24 146 -3 1 1363 288 289 72 0 chr12 102053084 102053181 -19204349 + L2b LINE L2 3222 3325 -50 1 1363 230 245 165 28 chr12 102053230 102053339 -19204191 - MIR SINE MIR -35 227 104 1 1363 1188 155 0 0 chr12 102053405 102053716 -19203814 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 1 1363 2290 148 16 0 chr12 102053848 102054220 -19203310 + ORR1C1 LTR MaLR 1 378 0 1 1363 604 193 0 167 chr12 102054786 102054954 -19202576 - B1_Mus2 SINE Alu -7 140 1 1 1363 1747 107 108 48 chr12 102055334 102055371 -19202159 + RLTR15 LTR ERVK 1 32 -327 1 1363 5827 79 51 76 chr12 102055371 102056287 -19201243 - RLTR13B1 LTR ERVK 0 893 1 1 1363 1747 107 108 48 chr12 102056287 102056582 -19200948 + RLTR15 LTR ERVK 33 353 -6 1 1363 1077 36 52 4 chr12 102056692 102056951 -19200579 + (TGGA)n Simple_repeat Simple_repeat 1 271 0 1 1363 1130 0 59 0 chr12 102056966 102057136 -19200394 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1 1363 1224 41 44 0 chr12 102057152 102057446 -19200084 + (TGGA)n Simple_repeat Simple_repeat 1 307 0 1 1363 873 133 22 5 chr12 102057932 102058084 -19199446 - B1_Mus2 SINE Alu 0 148 1 1 1363 18779 84 5 4 chr12 102058850 102062151 -19195379 - L1_Mus1 LINE L1 -1 6566 3262 1 1363 14378 93 25 4 chr12 102062157 102066906 -19190624 - L1Md_F2 LINE L1 0 6582 209 1 1363 216 86 0 0 chr12 102066906 102066941 -19190589 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1363 799 57 57 0 chr12 102066941 102067047 -19190483 - B1_Mm SINE Alu -11 136 25 1 1363 180 0 0 0 chr12 102067373 102067393 -19190137 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 1 1363 312 254 0 27 chr12 102067399 102067472 -19190058 - B4A SINE B4 -4 288 218 1 1363 527 179 10 40 chr12 102067977 102068076 -19189454 - ID_B1 SINE B4 -5 219 124 1 1363 315 0 0 0 chr12 102068076 102068111 -19189419 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1363 331 259 2 31 chr12 102068169 102068247 -19189283 + ID4 SINE ID 1 78 -5 1 1363 378 0 0 0 chr12 102068247 102068289 -19189241 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 1363 245 282 22 76 chr12 102068289 102068302 -19189228 + BC1_Mm scRNA scRNA 75 87 -65 1 1363 1400 53 15 70 chr12 102068384 102068585 -19188945 - B2_Mm2 SINE B2 -5 190 1 1 1363 246 361 145 8 chr12 102068646 102068777 -19188753 - MLT1H2 LTR MaLR -7 482 334 1 1363 1169 242 158 22 chr12 102068855 102069222 -19188308 + MTD LTR MaLR 3 419 0 1 1363 314 250 116 68 chr12 102069239 102069385 -19188145 - MLT1H2 LTR MaLR -259 230 78 1 1363 1509 231 42 63 chr12 102070837 102071216 -19186314 - MTEa LTR MaLR -2 377 7 1 1363 564 15 0 0 chr12 102071664 102071729 -19185801 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1363 295 197 0 62 chr12 102071732 102071797 -19185733 + MTE2a LTR MaLR 280 340 -39 1 1363 5240 70 62 1 chr12 102071949 102072664 -19184866 + L1_Mus3 LINE L1 5867 6624 -14 1 1363 308 296 116 7 chr12 102072883 102073029 -19184501 + L1ME3A LINE L1 5819 5980 -193 1 1363 473 199 56 18 chr12 102073133 102073268 -19184262 - PB1D7 SINE Alu -13 137 7 1 1363 362 147 15 0 chr12 102073743 102073811 -19183719 + C-rich Low_complexity Low_complexity 3 71 0 1 1363 916 244 17 205 chr12 102073838 102074056 -19183474 - MTE2a LTR MaLR -2 377 208 1 1363 761 200 50 7 chr12 102074056 102074197 -19183333 - B1_Mur1 SINE Alu -1 148 2 1 1363 916 244 17 205 chr12 102074197 102074442 -19183088 - MTE2a LTR MaLR -172 207 1 1 1363 429 250 17 33 chr12 102074561 102074681 -19182849 + Tigger7 DNA MER2_type 1 118 -2373 1 1363 341 284 102 30 chr12 102074684 102074851 -19182679 + Tigger7 DNA MER2_type 2313 2491 0 1 1363 245 315 43 0 chr12 102075340 102075432 -19182098 + L2c LINE L2 3032 3127 -260 1 1363 438 349 52 67 chr12 102075463 102075807 -19181723 - ORR1E LTR MaLR -20 339 1 1 1363 198 143 0 0 chr12 102076276 102076311 -19181219 + (TCC)n Simple_repeat Simple_repeat 1 35 0 1 1363 1344 68 68 0 chr12 102076311 102076487 -19181043 - B2_Mm2 SINE B2 -7 188 1 1 1363 668 171 121 23 chr12 102076523 102076655 -19180875 + B1_Mur3 SINE Alu 5 149 0 1 1363 612 271 0 44 chr12 102077260 102077395 -19180135 - RSINE1 SINE B4 -35 130 2 1 1363 504 247 60 27 chr12 102077395 102077543 -19179987 - B4 SINE B4 -66 226 74 1 1363 275 28 0 0 chr12 102077928 102077964 -19179566 + B1_Mm SINE Alu 112 147 0 1 1363 207 0 0 0 chr12 102077964 102077987 -19179543 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1363 1110 56 14 21 chr12 102078672 102078817 -19178713 - B1_Mus2 SINE Alu 0 147 4 1 1363 369 0 0 0 chr12 102078834 102078875 -19178655 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1363 365 299 44 25 chr12 102078879 102079037 -19178493 + Charlie4a DNA MER1_type 88 248 -260 1 1363 320 257 122 17 chr12 102079204 102079319 -19178211 - B1F SINE Alu -3 146 20 1 1363 282 301 90 62 chr12 102079206 102079351 -19178179 - ID_B1 SINE B4 -4 220 72 1 1363 315 0 0 0 chr12 102080014 102080049 -19177481 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1363 234 233 0 0 chr12 102080671 102080714 -19176816 + polypyrimidine Low_complexity Low_complexity 2 44 0 1 1363 189 0 0 0 chr12 102080820 102080841 -19176689 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1363 271 276 79 0 chr12 102081095 102081171 -19176359 + ID4 SINE ID 2 83 0 1 1363 1673 121 0 0 chr12 102081543 102081775 -19175755 - ORR1A2 LTR MaLR -95 232 1 1 1363 192 158 0 0 chr12 102081882 102081920 -19175610 + A-rich Low_complexity Low_complexity 1 38 0 1 1363 739 246 97 0 chr12 102083184 102083253 -19174277 + B4A SINE B4 57 126 -166 1 1363 444 37 0 0 chr12 102083253 102083307 -19174223 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1363 739 246 97 0 chr12 102083307 102083412 -19174118 + B4A SINE B4 127 247 -45 1 1363 556 279 24 24 chr12 102083464 102083629 -19173901 + RSINE1 SINE B4 1 165 0 1 1363 507 244 0 32 chr12 102083645 102083831 -19173699 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1363 199 286 0 45 chr12 102084234 102084300 -19173230 + MIR SINE MIR 113 175 -87 1 1363 430 219 115 115 chr12 102085373 102085538 -19171992 + RSINE1 SINE B4 1 165 0 1 1363 359 216 134 0 chr12 102086312 102086409 -19171121 + PB1D10 SINE Alu 1 110 -7 1 1363 799 248 27 36 chr12 102086491 102086713 -19170817 + B4A SINE B4 1 220 -72 1 1363 540 214 15 48 chr12 102087037 102087173 -19170357 - PB1D7 SINE Alu -5 144 12 1 1363 273 307 188 38 chr12 102087952 102088165 -19169365 - MLT1J1 LTR MaLR -102 342 98 1 1363 206 333 75 9 chr12 102088706 102088812 -19168718 - MIRb SINE MIR -64 204 92 1 1363 414 0 0 0 chr12 102088932 102088978 -19168552 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1363 621 281 105 40 chr12 102090022 102090368 -19167162 - RMER20B LTR ERVK -45 471 109 1 1363 835 256 107 74 chr12 102090605 102090968 -19166562 + MTE2a LTR MaLR 5 379 0 1 1363 280 352 48 27 chr12 102091000 102091146 -19166384 + MIRb SINE MIR 89 237 -31 1 1363 333 0 0 0 chr12 102091908 102091945 -19165585 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1363 530 292 0 3 chr12 102092176 102092342 -19165188 - L1M3 LINE L1 -441 5739 5579 1 1363 845 224 68 29 chr12 102092460 102092563 -19164967 + B3 SINE B2 2 102 -114 1 1363 1280 92 131 15 chr12 102092563 102092762 -19164768 + URR1A DNA MER1_type 1 222 -4 1 1363 845 224 68 29 chr12 102092762 102092865 -19164665 + B3 SINE B2 103 216 0 1 1363 230 250 0 0 chr12 102094056 102094104 -19163426 + ID_B1 SINE B4 149 196 -28 1 1363 355 250 0 0 chr12 102094216 102094288 -19163242 + ID_B1 SINE B4 153 224 0 1 1363 572 0 15 0 chr12 102094545 102094613 -19162917 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 1 1363 180 231 202 62 chr12 102095694 102095823 -19161707 - MIRc SINE MIR -20 248 102 1 1363 1034 89 253 11 chr12 102096579 102096761 -19160769 - URR1A DNA MER1_type 0 226 1 1 1363 271 251 0 0 chr12 102096899 102096979 -19160551 - AluG_3 SINE Alu -97 214 162 1 1363 1383 124 27 31 chr12 102097136 102097361 -19160169 + URR1A DNA MER1_type 3 226 0 1 1363 379 248 51 68 chr12 102097865 102097982 -19159548 + B1_Mus1 SINE Alu 34 148 0 2 1363 561 321 85 49 chr12 102097997 102098302 -19159228 + L1MC1 LINE L1 308 623 -5885 2 1363 748 272 88 47 chr12 102098320 102098431 -19159099 + L1MC1 LINE L1 2449 2559 -3762 2 1363 387 0 0 0 chr12 102098431 102098474 -19159056 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1363 748 272 88 47 chr12 102098474 102098725 -19158805 + L1MC1 LINE L1 2560 2826 -3495 2 1363 1506 228 28 8 chr12 102098726 102099085 -19158445 - ORR1D2 LTR MaLR -3 367 2 2 1363 2059 230 111 5 chr12 102099086 102099733 -19157797 + L1MC1 LINE L1 3191 3906 -2415 2 1363 288 346 12 0 chr12 102099742 102099823 -19157707 + RSINE1 SINE B4 1 82 -83 2 1363 23 0 0 0 chr12 102099875 102099898 -19157632 + AT_rich Low_complexity Low_complexity 1 23 0 2 1363 445 241 23 0 chr12 102099907 102099994 -19157536 + B3A SINE B2 76 164 -34 2 1363 485 32 16 0 chr12 102099994 102100057 -19157473 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1363 698 246 171 41 chr12 102100058 102100199 -19157331 + L1MC1 LINE L1 5834 5982 -526 2 1363 660 26 0 0 chr12 102100199 102100277 -19157253 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 1363 698 246 171 41 chr12 102100277 102100428 -19157102 + L1MC1 LINE L1 5983 6164 -344 2 1363 591 200 142 0 chr12 102100977 102101097 -19156433 - B1F2 SINE Alu -11 138 2 2 1363 300 281 30 50 chr12 102101125 102101226 -19156304 - RMER20B LTR ERVK -25 602 504 2 1363 454 330 44 48 chr12 102101513 102101742 -19155788 - RLTR26 LTR ERVK -223 419 192 2 1363 278 179 0 18 chr12 102101937 102101994 -19155536 + L1MB2 LINE L1 6093 6148 -23 2 1363 252 94 57 0 chr12 102102751 102102804 -19154726 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 2 1363 858 103 0 0 chr12 102102821 102102966 -19154564 + (GAAA)n Simple_repeat Simple_repeat 4 148 0 2 1363 372 312 103 23 chr12 102103223 102103397 -19154133 + MER21B LTR ERV1 280 467 -396 2 1363 529 320 121 50 chr12 102103410 102103732 -19153798 + MER21B LTR ERV1 515 859 -4 2 1363 280 333 126 12 chr12 102103803 102103970 -19153560 + MIR SINE MIR 20 205 -57 2 1363 772 256 13 19 chr12 102104475 102104516 -19153014 - RSINE1 SINE B4 0 165 125 2 1363 378 0 0 0 chr12 102104516 102104558 -19152972 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1363 772 256 13 19 chr12 102104558 102104675 -19152855 - RSINE1 SINE B4 -41 124 8 2 170 497 257 71 45 chr12 102105052 102105207 -19152323 - MER5A DNA MER1_type 0 189 31 2 1364 212 280 174 18 chr12 102106041 102106150 -19151380 - MIRb SINE MIR -105 163 38 2 1364 873 239 183 4 chr12 102107551 102107787 -19149743 - B4A SINE B4 -14 278 1 2 1364 536 253 23 34 chr12 102107881 102108057 -19149473 - MLT1A0 LTR MaLR 0 365 192 2 1364 1007 145 12 24 chr12 102108058 102108228 -19149302 + MTD LTR MaLR 248 415 -4 2 1364 308 317 0 50 chr12 102108545 102108693 -19148837 - MIRb SINE MIR -27 241 103 2 1364 748 203 0 0 chr12 102108697 102108825 -19148705 - B1F SINE Alu -21 128 1 2 1364 1656 31 0 0 chr12 102108841 102109032 -19148498 - B2_Mm1a SINE B2 -1 192 2 2 1364 745 206 29 0 chr12 102109110 102109246 -19148284 + B1_Mur2 SINE Alu 3 142 -7 2 1364 728 166 0 7 chr12 102109255 102109395 -19148135 + GA-rich Low_complexity Low_complexity 4 142 0 2 1364 287 266 24 0 chr12 102109842 102109966 -19147564 + ORR1B1-int LTR MaLR 633 759 -750 2 1364 777 144 0 0 chr12 102109857 102109968 -19147562 + B1_Mus1 SINE Alu 5 115 -33 2 1364 503 322 73 10 chr12 102111931 102112135 -19145395 + MLT1J1 LTR MaLR 9 225 -219 2 1364 471 35 0 0 chr12 102112796 102112853 -19144677 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1364 697 294 25 15 chr12 102112877 102113081 -19144449 - B4A SINE B4 -17 275 70 2 1364 646 135 62 18 chr12 102113106 102113219 -19144311 - B1_Mur2 SINE Alu -1 148 31 2 1364 445 299 126 44 chr12 102113110 102113316 -19144214 - B4 SINE B4 -69 223 1 2 1364 288 0 0 0 chr12 102115243 102115275 -19142255 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1364 1104 38 0 0 chr12 102115530 102115662 -19141868 + B1_Mus1 SINE Alu 2 133 -15 2 1364 331 262 86 16 chr12 102118148 102118276 -19139254 + MIRc SINE MIR 30 166 -102 2 1364 792 125 0 42 chr12 102118276 102118418 -19139112 + B2_Mm2 SINE B2 1 136 -59 2 1364 236 274 54 45 chr12 102118752 102118863 -19138667 - PB1D10 SINE Alu -1 116 5 2 1364 260 356 8 80 chr12 102119559 102119684 -19137846 + MER44A DNA MER2_type 1 116 -223 2 1364 222 37 0 0 chr12 102119773 102119800 -19137730 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1364 373 219 14 1 chr12 102119822 102119903 -19137627 + B1F1 SINE Alu 16 97 -53 2 1364 790 264 29 41 chr12 102119991 102120236 -19137294 + MER44A DNA MER2_type 87 328 -11 2 1364 553 222 87 0 chr12 102120997 102121123 -19136407 + RSINE1 SINE B4 3 139 -26 2 1364 258 333 23 23 chr12 102121120 102121249 -19136281 + B4A SINE B4 40 168 -124 2 1364 375 218 0 0 chr12 102121333 102121434 -19136096 + (CA)n Simple_repeat Simple_repeat 1 101 0 2 1364 409 302 54 65 chr12 102121764 102121948 -19135582 - MER5A DNA MER1_type 0 189 8 2 1364 884 177 0 6 chr12 102122262 102122438 -19135092 + CT-rich Low_complexity Low_complexity 3 177 0 2 1364 1616 26 0 0 chr12 102122974 102123166 -19134364 - B2_Mm1t SINE B2 0 193 2 2 1364 300 53 0 0 chr12 102123352 102123390 -19134140 + (CTCA)n Simple_repeat Simple_repeat 1 38 0 2 1364 318 106 0 0 chr12 102123417 102123464 -19134066 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 2 1364 754 136 22 17 chr12 102123501 102123680 -19133850 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 2 1364 318 26 0 0 chr12 102124249 102124288 -19133242 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 2 1364 333 276 182 0 chr12 102125752 102125805 -19131725 - MER112 DNA MER1_type -22 239 187 2 1364 468 0 0 0 chr12 102125805 102125857 -19131673 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1364 333 276 182 0 chr12 102125857 102125984 -19131546 - MER112 DNA MER1_type -75 186 27 2 1364 380 222 30 36 chr12 102128180 102128310 -19129220 - PB1D10 SINE Alu -13 136 11 2 1364 2633 122 145 16 chr12 102128335 102128347 -19129183 + RMER4B LTR ERVK 9 17 -568 2 1364 261 75 0 0 chr12 102128347 102128387 -19129143 + (TTGG)n Simple_repeat Simple_repeat 1 40 0 2 1364 1077 95 0 0 chr12 102128389 102128537 -19128993 - B1_Mus1 SINE Alu 0 148 1 2 1364 2633 122 145 16 chr12 102128537 102128555 -19128975 + RMER4B LTR ERVK 18 34 -551 2 1364 486 0 0 0 chr12 102128555 102128609 -19128921 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1364 2633 122 145 16 chr12 102128609 102129083 -19128447 + RMER4B LTR ERVK 35 582 -3 2 1364 213 39 0 0 chr12 102129563 102129589 -19127941 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 1364 280 280 127 89 chr12 102130090 102130247 -19127283 - RSINE1 SINE B4 0 165 3 2 1364 634 181 50 43 chr12 102130265 102130404 -19127126 - B1_Mur3 SINE Alu -2 147 8 2 1364 448 200 32 97 chr12 102130404 102130420 -19127110 - ID_B1 SINE B4 -2 222 78 2 1364 430 324 46 13 chr12 102130427 102130588 -19126942 - MIRb SINE MIR -89 179 20 2 1364 592 330 77 43 chr12 102130599 102131086 -19126444 - MLT1D LTR MaLR -18 487 1 2 1364 1121 156 85 0 chr12 102131029 102131228 -19126302 + URR1A DNA MER1_type 1 216 -10 2 1364 474 297 47 107 chr12 102131731 102131965 -19125565 + B4 SINE B4 4 223 -69 2 1364 657 232 29 0 chr12 102131828 102131966 -19125564 + B1_Mur2 SINE Alu 7 148 -1 2 1364 839 205 100 0 chr12 102131995 102132185 -19125345 + B3 SINE B2 6 214 -2 2 1364 1137 69 0 0 chr12 102132211 102132356 -19125174 + B1_Mm SINE Alu 1 145 -2 2 1364 207 125 0 0 chr12 102132356 102132396 -19125134 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 2 1364 627 51 0 0 chr12 102133003 102133082 -19124448 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1364 964 271 5 0 chr12 102134445 102134652 -19122878 + ID_B1 SINE B4 1 208 -16 2 1364 329 152 0 29 chr12 102134691 102134759 -19122771 + GA-rich Low_complexity Low_complexity 1 66 0 2 1364 213 119 0 67 chr12 102135188 102135233 -19122297 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2 1364 295 272 118 33 chr12 102135258 102135410 -19122120 - Lx8 LINE L1 -6 7467 7303 2 1364 345 238 0 45 chr12 102135673 102135761 -19121769 - Lx8 LINE L1 -200 7273 7190 2 1364 203 367 53 20 chr12 102135839 102135989 -19121541 - MIRb SINE MIR -28 240 86 2 1364 431 250 40 32 chr12 102138167 102138291 -19119239 - MIR SINE MIR -89 173 49 2 1364 205 27 0 75 chr12 102138358 102138398 -19119132 + (CCCCCA)n Simple_repeat Simple_repeat 1 37 0 2 1364 1009 147 141 10 chr12 102138721 102138920 -19118610 - URR1B DNA MER1_type 0 225 1 2 1364 444 227 18 35 chr12 102139229 102139343 -19118187 - B4A SINE B4 -58 234 123 2 1364 301 339 54 0 chr12 102139445 102139575 -19117955 + MIR SINE MIR 15 151 -111 2 1364 252 248 34 84 chr12 102139717 102139836 -19117694 - PB1D9 SINE Alu -7 113 1 2 1364 305 212 15 29 chr12 102140326 102140394 -19117136 - ID4_ SINE ID -4 79 13 2 1364 815 147 0 42 chr12 102140570 102140712 -19116818 + B1_Mm SINE Alu 3 138 -9 2 1364 1084 70 0 27 chr12 102141673 102141821 -19115709 + B1_Mus1 SINE Alu 3 146 -2 2 1364 315 65 0 0 chr12 102141821 102141867 -19115663 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 2 1364 360 0 0 0 chr12 102142338 102142378 -19115152 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1364 1100 140 109 10 chr12 102142433 102142635 -19114895 + URR1A DNA MER1_type 1 222 -4 2 1364 224 323 9 94 chr12 102142866 102142972 -19114558 + PB1 SINE Alu 1 97 -30 2 1364 361 152 0 42 chr12 102142984 102143056 -19114474 + ID4_ SINE ID 2 70 -13 2 1364 600 14 0 0 chr12 102143059 102143128 -19114402 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 2 1364 397 296 150 6 chr12 102143264 102143437 -19114093 + MIR SINE MIR 55 252 -10 2 1364 357 266 64 1 chr12 102143651 102143746 -19113784 + PB1D10 SINE Alu 6 106 -43 2 1364 624 116 0 0 chr12 102143746 102143841 -19113689 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 2 1364 220 290 79 64 chr12 102143841 102143853 -19113677 + B1F SINE Alu 107 117 -32 2 1364 266 288 12 0 chr12 102143853 102143933 -19113597 + ID4_ SINE ID 3 83 0 2 1364 220 290 79 64 chr12 102143933 102143964 -19113566 + B1F SINE Alu 118 146 -3 2 1364 546 291 71 53 chr12 102144377 102144758 -19112772 + MLT1D LTR MaLR 21 505 0 2 1364 317 295 0 0 chr12 102145412 102145490 -19112040 + MER113 DNA MER1_type 106 183 -338 2 1364 22 0 0 0 chr12 102146231 102146253 -19111277 + GC_rich Low_complexity Low_complexity 1 22 0 2 1364 696 294 134 36 chr12 102147169 102147526 -19110004 + MER63D DNA AcHobo 10 401 -660 3 1364 236 329 0 37 chr12 102147519 102147601 -19109929 - PB1D10 SINE Alu 0 117 39 3 1364 198 0 0 0 chr12 102150026 102150048 -19107482 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1364 180 279 0 0 chr12 102150050 102150111 -19107419 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1364 306 0 0 0 chr12 102152553 102152587 -19104943 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 1364 2891 61 23 13 chr12 102152702 102153098 -19104432 + MTB LTR MaLR 1 400 0 3 1364 292 300 122 69 chr12 102153232 102153436 -19104094 - B4 SINE B4 -77 215 1 3 1364 529 262 8 15 chr12 102153772 102153904 -19103626 - B4 SINE B4 -67 225 95 3 1364 483 18 0 0 chr12 102153934 102153990 -19103540 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1364 1523 26 16 16 chr12 102154386 102154579 -19102951 + B2_Mm1a SINE B2 1 193 0 3 1364 1513 52 0 0 chr12 102154587 102154780 -19102750 + B2_Mm1a SINE B2 1 193 0 3 1364 801 91 25 0 chr12 102155327 102155448 -19102082 - B1_Mus1 SINE Alu 0 148 25 3 1364 507 251 187 0 chr12 102155461 102155632 -19101898 - ID_B1 SINE B4 -19 205 3 3 1364 216 0 0 0 chr12 102155653 102155677 -19101853 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1364 248 288 150 0 chr12 102155781 102155861 -19101669 - U6 snRNA snRNA -13 94 3 3 1364 320 250 54 0 chr12 102156126 102156218 -19101312 + ID_B1 SINE B4 1 97 -127 3 1364 360 327 0 34 chr12 102157758 102157875 -19099655 - PB1D10 SINE Alu -1 116 4 3 1364 22 0 0 0 chr12 102158443 102158465 -19099065 + AT_rich Low_complexity Low_complexity 1 22 0 3 1364 507 228 29 87 chr12 102158476 102158649 -19098881 - RSINE1 SINE B4 0 165 3 3 1364 506 287 24 42 chr12 102158709 102158876 -19098654 - RSINE1 SINE B4 0 165 2 3 1364 999 225 34 0 chr12 102158904 102159113 -19098417 + B3 SINE B2 1 216 0 3 1364 231 281 31 0 chr12 102161087 102161151 -19096379 + MER90a LTR ERV1 7 72 -542 3 1364 204 40 0 0 chr12 102161804 102161829 -19095701 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1364 23 0 0 0 chr12 102162130 102162153 -19095377 + AT_rich Low_complexity Low_complexity 1 23 0 3 1364 323 256 0 24 chr12 102162233 102162317 -19095213 + ID4 SINE ID 2 83 0 3 1364 191 36 36 0 chr12 102162330 102162358 -19095172 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 3 1364 203 226 19 19 chr12 102163881 102163935 -19093595 + GA-rich Low_complexity Low_complexity 3 56 0 3 1364 605 154 83 25 chr12 102165061 102165181 -19092349 - B1_Mus2 SINE Alu -10 137 11 3 1364 318 267 28 73 chr12 102165096 102165205 -19092325 - MT2B LTR ERVL -344 257 154 3 1364 349 266 72 72 chr12 102165363 102165501 -19092029 + B1F1 SINE Alu 3 140 -9 3 1364 293 104 0 40 chr12 102166003 102166053 -19091477 + PB1D9 SINE Alu 1 48 -72 3 1364 182 0 0 143 chr12 102166053 102166144 -19091386 + (CAGGG)n Simple_repeat Simple_repeat 3 80 0 3 1364 879 192 48 15 chr12 102166161 102166367 -19091163 - B3 SINE B2 -3 213 1 3 1364 353 247 12 12 chr12 102167340 102167422 -19090108 + ID4 SINE ID 2 83 0 3 1364 730 215 192 0 chr12 102168443 102168615 -19088915 + URR1A DNA MER1_type 1 205 -21 3 1364 759 171 41 35 chr12 102168985 102169130 -19088400 + B1_Mur1 SINE Alu 3 148 -1 3 1364 1067 95 142 6 chr12 102169249 102169418 -19088112 + B2_Mm1t SINE B2 2 193 0 3 1364 864 252 33 5 chr12 102169438 102169653 -19087877 + B4 SINE B4 2 222 -70 3 1364 729 0 0 0 chr12 102170518 102170599 -19086931 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 3 1364 655 318 125 21 chr12 102170601 102170890 -19086640 - MER58B DNA MER1_type -16 325 7 3 1364 529 245 0 0 chr12 102172171 102172277 -19085253 + Lx9 LINE L1 6672 6777 -867 3 1364 24 0 0 0 chr12 102172360 102172384 -19085146 + AT_rich Low_complexity Low_complexity 1 24 0 3 1364 617 194 90 6 chr12 102172529 102172695 -19084835 + B3A SINE B2 3 182 -16 3 1364 278 304 59 25 chr12 102172963 102173081 -19084449 + MIRc SINE MIR 29 150 -118 3 1364 329 288 12 0 chr12 102173092 102173172 -19084358 + MER82 DNA MER2_type 21 101 -552 3 1364 259 275 42 28 chr12 102176619 102176690 -19080840 - ID4_ SINE ID -2 81 10 3 1364 463 296 19 38 chr12 102177921 102178079 -19079451 - MER58A DNA MER1_type -14 210 56 3 1364 927 249 28 23 chr12 102180692 102180910 -19076620 - ID_B1 SINE B4 0 224 6 3 1364 417 276 48 0 chr12 102181304 102181409 -19076121 + ID_B1 SINE B4 115 224 0 3 1364 324 187 119 18 chr12 102181734 102181843 -19075687 + MLT1J2 LTR MaLR 198 317 -131 3 1364 236 316 0 69 chr12 102182564 102182666 -19074864 + Tigger5 DNA MER2_type 94 188 -2218 3 1364 619 309 62 90 chr12 102184784 102185172 -19072358 + MTB_Mm LTR MaLR 1 377 -30 3 1364 225 0 0 0 chr12 102185502 102185527 -19072003 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 3 1364 240 35 0 0 chr12 102187207 102187236 -19070294 + (TATG)n Simple_repeat Simple_repeat 3 31 0 3 1364 1692 163 36 108 chr12 102187565 102188168 -19069362 + RLTR11A2 LTR ERVK 15 526 -1 3 1364 1383 212 236 62 chr12 102188525 102189183 -19068347 + Lx9 LINE L1 6870 7641 -3 3 1364 521 231 208 0 chr12 102189348 102189478 -19068052 - RSINE1 SINE B4 -7 158 2 3 1364 242 288 0 0 chr12 102189884 102189943 -19067587 + tRNA-Ala-GCY_ tRNA tRNA 4 62 -13 3 1364 249 277 46 0 chr12 102189890 102189955 -19067575 + ID4_ SINE ID 16 83 0 3 1364 239 338 23 108 chr12 102189955 102190066 -19067464 + ID_B1 SINE B4 16 176 -48 3 1364 431 243 33 34 chr12 102189978 102190112 -19067418 + PB1 SINE Alu 17 145 -4 3 1364 640 192 58 0 chr12 102190102 102190222 -19067308 + B3 SINE B2 5 131 -85 3 1364 364 248 53 35 chr12 102190264 102190377 -19067153 + RSINE1 SINE B4 20 134 -31 3 1364 26 64 0 0 chr12 102190383 102190430 -19067100 + AT_rich Low_complexity Low_complexity 1 47 0 3 1364 1254 48 0 0 chr12 102191791 102191938 -19065592 + B1_Mus2 SINE Alu 1 147 0 3 1364 316 273 13 0 chr12 102192755 102192832 -19064698 + ID4 SINE ID 5 82 -1 3 1364 248 296 76 69 chr12 102193593 102193738 -19063792 - MIRc SINE MIR -66 202 47 3 1364 236 286 101 10 chr12 102194855 102194954 -19062576 + BC1_Mm scRNA scRNA 1 108 -44 3 1364 255 359 0 0 chr12 102195864 102195928 -19061602 - MER58A DNA MER1_type -147 77 14 3 1364 186 268 83 14 chr12 102195960 102196032 -19061498 - L2c LINE L2 -57 3330 3254 3 1364 194 203 53 80 chr12 102196511 102196586 -19060944 + L3 LINE CR1 2185 2257 -2232 3 1364 192 40 0 0 chr12 102197039 102197064 -19060466 + (CAGGC)n Simple_repeat Simple_repeat 2 26 0 3 1364 266 208 176 27 chr12 102198259 102198333 -19059197 + PB1D10 SINE Alu 24 108 -9 3 1364 243 0 0 0 chr12 102198455 102198482 -19059048 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 3 1364 257 285 180 14 chr12 102198545 102198684 -19058846 - B4A SINE B4 -23 269 108 3 1364 742 230 84 0 chr12 102198757 102198935 -19058595 - B3 SINE B2 -3 213 21 3 1364 387 260 137 20 chr12 102199041 102199194 -19058336 - B4A SINE B4 -87 205 35 3 1364 514 226 86 17 chr12 102199245 102199362 -19058168 - ID_B1 SINE B4 -1 223 99 3 1364 302 189 74 131 chr12 102199255 102199377 -19058153 - PB1 SINE Alu -8 119 5 3 1364 377 280 34 27 chr12 102199483 102199630 -19057900 - L1ME2z LINE L1 -8 6436 6289 3 1364 335 184 11 0 chr12 102201575 102201662 -19055868 + (CACCAT)n Simple_repeat Simple_repeat 1 88 0 3 1364 238 26 0 49 chr12 102202071 102202112 -19055418 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1364 858 26 0 9 chr12 102202112 102202220 -19055310 - B1_Mus2 SINE Alu -9 138 31 3 1364 452 263 44 0 chr12 102202705 102202819 -19054711 + PB1 SINE Alu 1 119 -8 3 1364 522 0 0 0 chr12 102202819 102202877 -19054653 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1364 1136 61 7 20 chr12 102202969 102203107 -19054423 + B1_Mus1 SINE Alu 1 138 -10 3 1364 279 0 0 0 chr12 102203107 102203138 -19054392 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1364 1136 61 7 20 chr12 102203138 102203149 -19054381 + B1_Mus1 SINE Alu 139 148 0 3 1364 547 294 36 40 chr12 102203164 102203378 -19054152 + B3A SINE B2 1 215 -1 3 1364 513 0 0 0 chr12 102203502 102203559 -19053971 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1364 583 247 247 52 chr12 102203586 102203894 -19053636 + MTB LTR MaLR 33 400 0 3 1364 692 259 177 43 chr12 102204838 102205092 -19052438 - B4A SINE B4 -3 289 2 3 1364 3580 10 2 8 chr12 102205159 102205557 -19051973 + MTA_Mm LTR MaLR 1 396 0 3 1364 534 31 0 0 chr12 102205720 102205784 -19051746 + (CACAG)n Simple_repeat Simple_repeat 5 68 0 3 1364 645 49 0 0 chr12 102206319 102206400 -19051130 + (GA)n Simple_repeat Simple_repeat 1 81 0 3 1364 298 281 0 0 chr12 102208944 102209008 -19048522 - ID4_ SINE ID -4 79 16 3 1364 406 280 56 0 chr12 102209026 102209133 -19048397 - PB1D10 SINE Alu 0 117 5 3 1364 278 348 43 0 chr12 102209190 102209305 -19048225 - MER58A DNA MER1_type -90 134 15 3 1364 331 287 30 0 chr12 102209996 102210097 -19047433 - PB1D10 SINE Alu 0 117 14 3 1364 1217 68 0 0 chr12 102210152 102210313 -19047217 + B2_Mm2 SINE B2 1 161 -34 3 1364 204 40 0 0 chr12 102210313 102210338 -19047192 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1364 214 341 45 28 chr12 102210678 102210812 -19046718 + MIRm SINE MIR 41 175 -33 4 1364 1111 239 47 78 chr12 102211002 102211361 -19046169 + MTEa LTR MaLR 9 356 -23 4 1364 838 214 101 10 chr12 102212495 102212693 -19044837 + B3 SINE B2 1 216 0 4 1364 449 198 74 19 chr12 102212808 102212916 -19044614 + PB1D10 SINE Alu 1 114 -3 4 1364 428 256 92 15 chr12 102212922 102213053 -19044477 + RSINE1 SINE B4 25 165 0 4 1364 369 0 0 0 chr12 102213129 102213170 -19044360 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1364 807 213 55 17 chr12 102213690 102213871 -19043659 + B3 SINE B2 1 188 -28 4 1364 459 0 0 0 chr12 102213871 102213922 -19043608 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1364 232 152 22 0 chr12 102213966 102214012 -19043518 - L2c LINE L2 -318 3069 3023 4 1364 181 286 143 0 chr12 102214993 102215043 -19042487 - MIRb SINE MIR -77 191 141 4 1364 213 39 0 0 chr12 102215043 102215069 -19042461 + (GGA)n Simple_repeat Simple_repeat 2 27 0 4 1364 181 286 143 0 chr12 102215069 102215109 -19042421 - MIRb SINE MIR -128 140 90 4 1364 252 86 0 0 chr12 102215174 102215209 -19042321 + (ACTG)n Simple_repeat Simple_repeat 4 38 0 4 1364 24 0 0 0 chr12 102215518 102215542 -19041988 + AT_rich Low_complexity Low_complexity 1 24 0 4 1364 225 83 0 0 chr12 102215668 102215704 -19041826 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1364 739 258 53 48 chr12 102216652 102216880 -19040650 - MTEb LTR MaLR 0 379 151 4 1364 363 308 74 34 chr12 102217004 102217152 -19040378 + RSINE1 SINE B4 5 158 -7 4 1364 21 0 0 0 chr12 102222387 102222408 -19035122 + GC_rich Low_complexity Low_complexity 1 21 0 4 1364 591 137 0 0 chr12 102222784 102222879 -19034651 + RLTR13B1 LTR ERVK 799 893 0 4 1364 408 257 33 60 chr12 102222939 102223155 -19034375 + B4 SINE B4 1 218 -74 4 1364 417 255 31 0 chr12 102223895 102223993 -19033537 + PB1D7 SINE Alu 18 118 -2 4 1364 799 216 126 21 chr12 102224179 102224505 -19033025 - Charlie5 DNA MER1_type -3 2621 2262 4 1364 249 282 0 0 chr12 102225226 102225297 -19032233 + (CGG)n Simple_repeat Simple_repeat 3 73 0 4 1364 315 176 0 0 chr12 102225227 102225278 -19032252 + (CAGAGA)n Simple_repeat Simple_repeat 1 51 0 4 1364 198 192 0 0 chr12 102225298 102225350 -19032180 + GA-rich Low_complexity Low_complexity 2 53 0 4 1364 217 152 0 0 chr12 102225350 102225383 -19032147 + (CAGAGA)n Simple_repeat Simple_repeat 1 33 0 4 1364 291 193 0 0 chr12 102225983 102226040 -19031490 + B1_Mur1 SINE Alu 85 141 -8 4 1364 1114 63 0 0 chr12 102226085 102226227 -19031303 + B1_Mus1 SINE Alu 1 142 -6 4 1364 813 227 23 37 chr12 102226261 102226476 -19031054 - B3 SINE B2 0 216 5 4 1364 234 258 11 53 chr12 102226953 102227047 -19030483 - L2b LINE L2 -225 3150 3061 4 1364 403 296 73 68 chr12 102229443 102229635 -19027895 - B3A SINE B2 -5 193 1 4 1364 248 304 0 42 chr12 102230952 102231024 -19026506 + MLT1A1 LTR MaLR 26 94 -314 4 1364 271 287 107 19 chr12 102231152 102231255 -19026275 + MLT1A1 LTR MaLR 284 395 -13 4 1364 375 149 0 0 chr12 102231988 102232062 -19025468 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1364 194 0 39 0 chr12 102232430 102232456 -19025074 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 4 1364 606 230 0 0 chr12 102232805 102232931 -19024599 + B1_Mur1 SINE Alu 18 143 -6 4 1364 709 158 299 0 chr12 102233327 102233491 -19024039 + B3 SINE B2 1 213 -3 4 1364 276 30 0 0 chr12 102235172 102235205 -19022325 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1364 315 0 0 0 chr12 102235426 102235461 -19022069 + (CACCC)n Simple_repeat Simple_repeat 5 39 0 4 1364 504 0 0 0 chr12 102235988 102236044 -19021486 + (CAGG)n Simple_repeat Simple_repeat 4 59 0 4 1365 387 393 35 29 chr12 102236852 102237193 -19020337 - L1ME3B LINE L1 -353 5887 5545 4 1365 1104 55 0 14 chr12 102238304 102238452 -19019078 + B1_Mus2 SINE Alu 2 147 0 4 1365 349 134 0 56 chr12 102238545 102238616 -19018914 + B2_Mm2 SINE B2 3 69 -126 4 1365 283 227 191 43 chr12 102239606 102239721 -19017809 + MIRc SINE MIR 15 146 -122 4 1365 351 0 0 0 chr12 102239824 102239863 -19017667 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1365 266 306 0 27 chr12 102240292 102240366 -19017164 - ID SINE ID -151 73 2 4 1365 364 259 12 0 chr12 102240391 102240472 -19017058 - ID4 SINE ID 0 83 2 4 1365 192 40 0 0 chr12 102240516 102240541 -19016989 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1365 511 321 24 0 chr12 102240714 102240879 -19016651 - B4A SINE B4 -121 171 3 4 1365 305 317 29 109 chr12 102240906 102241044 -19016486 - ID_B1 SINE B4 -86 138 12 4 1365 221 293 35 47 chr12 102242700 102242786 -19014744 + PB1D10 SINE Alu 15 99 -18 4 1365 285 290 65 0 chr12 102242821 102242914 -19014616 - PB1D10 SINE Alu -18 99 1 4 1365 243 283 10 71 chr12 102243057 102243071 -19014459 + MT2B LTR ERVL 152 159 -442 4 1365 444 208 57 38 chr12 102243071 102243176 -19014354 + PB1D9 SINE Alu 2 108 -12 4 1365 405 0 0 0 chr12 102243177 102243222 -19014308 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1365 216 135 0 0 chr12 102243222 102243259 -19014271 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 4 1365 211 246 32 32 chr12 102243261 102243324 -19014206 + MIR SINE MIR 84 146 -62 4 1365 357 24 0 0 chr12 102243484 102243526 -19014004 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1365 1225 226 78 29 chr12 102243632 102243978 -19013552 - ORR1D2 LTR MaLR -7 363 1 4 1365 413 191 43 0 chr12 102245535 102245629 -19011901 - PB1D10 SINE Alu -7 110 13 4 1365 464 261 48 54 chr12 102245553 102245719 -19011811 - ID_B1 SINE B4 -54 170 6 4 1365 234 270 26 26 chr12 102245941 102246017 -19011513 - ID4 SINE ID -6 77 2 4 1365 412 238 83 64 chr12 102247144 102247301 -19010229 + RSINE1 SINE B4 3 162 -3 4 1365 941 240 62 98 chr12 102247503 102247690 -19009840 + ORR1D2 LTR MaLR 15 209 -161 4 1365 1004 84 21 0 chr12 102247690 102247833 -19009697 + B1_Mus1 SINE Alu 2 147 -1 4 1365 941 240 62 98 chr12 102247833 102247947 -19009583 + ORR1D2 LTR MaLR 210 310 -60 4 1365 216 0 0 0 chr12 102247947 102247971 -19009559 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1365 1045 82 0 0 chr12 102247972 102248107 -19009423 - B1_Mus1 SINE Alu -12 136 2 4 1365 941 240 62 98 chr12 102248107 102248171 -19009359 + ORR1D2 LTR MaLR 311 369 -1 4 1365 427 204 9 27 chr12 102249101 102249212 -19008318 + B1_Mur4 SINE Alu 42 150 0 4 1365 346 272 57 29 chr12 102249516 102249656 -19007874 - L1MB3 LINE L1 -7 6176 6033 4 1365 455 167 11 0 chr12 102249752 102249842 -19007688 + CT-rich Low_complexity Low_complexity 1 91 0 4 1365 1007 58 50 0 chr12 102249882 102250021 -19007509 + B1_Mus2 SINE Alu 2 147 0 4 1365 261 83 0 0 chr12 102250021 102250057 -19007473 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 4 1365 405 0 0 0 chr12 102251781 102251826 -19005704 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1365 931 66 22 0 chr12 102251873 102252009 -19005521 - B1_Mus1 SINE Alu 0 148 10 4 1365 232 340 18 27 chr12 102252233 102252345 -19005185 - MIR SINE MIR -63 199 89 4 1365 788 49 187 8 chr12 102253622 102253745 -19003785 + B1_Mus2 SINE Alu 2 146 -1 4 1365 275 202 12 0 chr12 102254096 102254180 -19003350 + (CA)n Simple_repeat Simple_repeat 1 85 0 4 1365 241 261 85 21 chr12 102254644 102254738 -19002792 + MIRb SINE MIR 96 195 -73 4 1365 248 267 17 0 chr12 102256891 102256951 -19000579 + L1M5 LINE L1 5605 5665 -459 4 1365 525 296 30 0 chr12 102257627 102257762 -18999768 - ID_B1 SINE B4 -6 218 80 4 1365 368 183 280 0 chr12 102257793 102257886 -18999644 + RSINE1 SINE B4 5 123 -42 4 1365 605 204 215 0 chr12 102258128 102258300 -18999230 + B3 SINE B2 1 209 -7 4 1365 180 0 0 0 chr12 102258321 102258341 -18999189 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1365 230 303 0 0 chr12 102258431 102258497 -18999033 - B1F SINE Alu -8 141 76 4 1365 256 240 117 26 chr12 102258478 102258555 -18998975 - B4 SINE B4 -123 169 86 4 1365 902 243 54 38 chr12 102259309 102259570 -18997960 - B4 SINE B4 -22 270 6 4 1365 244 274 0 0 chr12 102259608 102259670 -18997860 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1365 656 203 10 81 chr12 102261011 102261220 -18996310 + B2_Mm2 SINE B2 2 195 0 4 1365 247 206 48 0 chr12 102262327 102262390 -18995140 - ID4_ SINE ID -15 68 3 4 1365 341 303 20 0 chr12 102262410 102262509 -18995021 - PB1D7 SINE Alu -1 119 19 4 1365 763 273 28 23 chr12 102262550 102262764 -18994766 - ID_B1 SINE B4 0 224 10 4 1365 237 290 30 79 chr12 102263372 102263473 -18994057 - MIR3 SINE MIR -46 162 67 4 1365 570 231 83 14 chr12 102264065 102264210 -18993320 + RSINE1 SINE B4 6 160 -5 4 1365 201 336 90 38 chr12 102264302 102264467 -18993063 - MIR SINE MIR -36 232 49 4 1365 604 228 32 0 chr12 102264536 102264659 -18992871 - ID_B1 SINE B4 -8 216 90 4 1365 237 333 54 61 chr12 102264537 102264684 -18992846 + YREP_Mm Unknown Unknown 186 331 -1481 4 1365 22 0 0 0 chr12 102265159 102265181 -18992349 + GC_rich Low_complexity Low_complexity 1 22 0 4 1365 21 36 0 0 chr12 102267125 102267153 -18990377 + GC_rich Low_complexity Low_complexity 1 28 0 4 1365 541 281 139 11 chr12 102267994 102268181 -18989349 + B3 SINE B2 1 211 -5 4 1365 553 252 41 8 chr12 102268181 102268328 -18989202 + ID_B1 SINE B4 69 213 -11 4 1365 374 168 40 13 chr12 102268351 102268438 -18989092 + B1F1 SINE Alu 22 110 -39 4 1365 1137 69 75 0 chr12 102268539 102268713 -18988817 + B2_Mm2 SINE B2 2 188 -7 4 1365 1200 40 0 0 chr12 102268947 102269095 -18988435 - B1_Mus1 SINE Alu 0 148 1 5 1365 727 184 44 0 chr12 102269626 102269762 -18987768 - B1_Mur1 SINE Alu -5 144 3 5 1365 1528 272 68 58 chr12 102270166 102270721 -18986809 - Lx8 LINE L1 -258 7215 6655 5 1365 534 248 15 10 chr12 102270826 102271007 -18986523 - B3 SINE B2 -11 184 2 5 1365 253 258 0 0 chr12 102271011 102271073 -18986457 + MTEb LTR MaLR 308 369 -10 5 1365 274 224 188 0 chr12 102271088 102271173 -18986357 - L1M4 LINE L1 -1311 4835 4735 5 1365 266 269 75 59 chr12 102271486 102271672 -18985858 - L1M4 LINE L1 -1561 4585 4397 5 1365 977 199 5 15 chr12 102271769 102271973 -18985557 + B3 SINE B2 2 203 -13 5 1365 754 179 7 33 chr12 102271999 102272149 -18985381 - B1_Mus1 SINE Alu -1 147 2 5 1365 183 80 0 0 chr12 102272149 102272174 -18985356 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 5 1365 601 141 20 0 chr12 102272198 102272297 -18985233 - PB1D9 SINE Alu -19 101 1 5 1365 655 98 49 0 chr12 102272498 102272600 -18984930 + MTB_Mm LTR MaLR 1 107 -300 5 1365 607 182 29 0 chr12 102272637 102272774 -18984756 - MYSERV-int LTR ERVK -1099 5451 5311 5 1365 422 207 117 34 chr12 102272774 102272948 -18984582 - RMER4A LTR ERVK -45 540 251 5 1365 2213 254 80 40 chr12 102272948 102273097 -18984433 - MYSERV-int LTR ERVK -1424 5126 4988 5 1365 1139 54 0 13 chr12 102273097 102273235 -18984295 + B1_Mus1 SINE Alu 1 138 -10 5 1365 195 42 0 0 chr12 102273235 102273259 -18984271 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1365 2213 254 80 40 chr12 102273269 102273949 -18983581 - MYSERV-int LTR ERVK -1563 4987 4264 5 1365 238 269 15 15 chr12 102273956 102274024 -18983506 - ID4 SINE ID -11 72 5 5 1365 243 213 0 0 chr12 102274653 102274700 -18982830 + PB1D10 SINE Alu 43 89 -28 5 1365 1055 77 0 34 chr12 102274867 102275015 -18982515 + B1_Mus2 SINE Alu 2 144 -3 5 1365 231 36 0 0 chr12 102275017 102275045 -18982485 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1365 325 242 102 31 chr12 102275106 102275204 -18982326 - B1_Mm SINE Alu -14 106 2 5 1365 1514 36 0 25 chr12 102275263 102275460 -18982070 + B2_Mm1t SINE B2 2 193 0 5 1365 902 85 40 47 chr12 102275533 102275681 -18981849 + B1_Mus1 SINE Alu 2 148 0 5 1365 245 186 220 0 chr12 102276687 102276746 -18980784 + B1_Mur2 SINE Alu 35 106 -43 5 1365 282 208 19 0 chr12 102276892 102276945 -18980585 + B3A SINE B2 2 55 -143 5 1365 281 192 101 13 chr12 102276941 102277020 -18980510 - B1_Mus1 SINE Alu -62 86 1 5 1365 373 208 405 0 chr12 102277032 102277180 -18980350 - B3 SINE B2 -4 212 4 5 1365 22 0 0 0 chr12 102277939 102277961 -18979569 + AT_rich Low_complexity Low_complexity 1 22 0 5 1365 21 0 0 0 chr12 102278338 102278359 -18979171 + AT_rich Low_complexity Low_complexity 1 21 0 5 1365 204 67 0 0 chr12 102278930 102278960 -18978570 + (CAT)n Simple_repeat Simple_repeat 3 32 0 5 1365 341 165 34 112 chr12 102279178 102279267 -18978263 - ID4 SINE ID 0 83 2 5 1365 251 318 117 36 chr12 102279278 102279389 -18978141 - PB1 SINE Alu -7 120 1 5 1365 319 307 76 42 chr12 102279603 102279722 -18977808 + RSINE1 SINE B4 8 130 -35 5 1365 270 0 0 0 chr12 102279918 102279948 -18977582 + (CAAAG)n Simple_repeat Simple_repeat 2 31 0 5 1365 703 277 6 13 chr12 102281114 102281271 -18976259 + B3 SINE B2 50 205 -11 5 1365 214 378 56 0 chr12 102282029 102282119 -18975411 + B1F1 SINE Alu 5 99 -50 5 1365 544 148 176 0 chr12 102282200 102282308 -18975222 - B1_Mur4 SINE Alu -19 131 5 5 1365 636 157 0 90 chr12 102282340 102282518 -18975012 - B1_Mm SINE Alu 0 149 1 5 1365 221 203 14 111 chr12 102284948 102285020 -18972510 - ID4_ SINE ID -9 74 10 5 1365 395 262 142 8 chr12 102285088 102285215 -18972315 - RSINE1 SINE B4 -19 146 3 5 1365 290 263 131 0 chr12 102286097 102286196 -18971334 - PB1D9 SINE Alu -8 112 1 5 1365 649 257 101 17 chr12 102286350 102286523 -18971007 - B3 SINE B2 -10 206 15 5 1365 256 333 20 50 chr12 102287190 102287202 -18970328 + ID SINE ID 72 80 -144 5 1365 401 257 70 52 chr12 102287202 102287317 -18970213 + B1F SINE Alu 1 117 0 5 1365 836 68 17 8 chr12 102288497 102288616 -18968914 - PB1D9 SINE Alu 0 120 1 5 1365 323 284 121 33 chr12 102288837 102288928 -18968602 + PB1D10 SINE Alu 13 111 -38 5 1365 1042 117 74 23 chr12 102289079 102289254 -18968276 - B2_Mm2 SINE B2 -10 185 2 5 1365 1000 217 19 10 chr12 102289257 102289466 -18968064 - B3 SINE B2 -4 212 2 5 1365 725 126 102 8 chr12 102290043 102290171 -18967359 - B1_Mur1 SINE Alu -9 140 1 5 1365 295 259 130 41 chr12 102290251 102290420 -18967110 + MER113 DNA MER1_type 164 347 -174 5 1365 24 0 0 0 chr12 102291474 102291498 -18966032 + AT_rich Low_complexity Low_complexity 1 24 0 5 1365 198 103 0 0 chr12 102292006 102292035 -18965495 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1365 298 339 23 30 chr12 102292208 102292339 -18965191 + B4A SINE B4 37 166 -126 5 1365 791 193 16 11 chr12 102292708 102292891 -18964639 + B2_Mm2 SINE B2 2 185 -10 5 1365 402 21 0 0 chr12 102292902 102292949 -18964581 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1365 1216 126 11 0 chr12 102293068 102293251 -18964279 + B2_Mm1t SINE B2 2 186 -7 5 1365 213 119 0 0 chr12 102293261 102293303 -18964227 + (TATG)n Simple_repeat Simple_repeat 1 42 0 5 1365 289 253 124 133 chr12 102293303 102293408 -18964122 - B1_Mus2 SINE Alu -15 105 2 5 1365 228 270 30 60 chr12 102293408 102293445 -18964085 - MT2B LTR ERVL -343 258 224 5 1365 401 225 152 29 chr12 102294189 102294294 -18963236 + PB1D9 SINE Alu 2 119 -1 5 1365 238 293 0 0 chr12 102294471 102294529 -18963001 - Cheshire DNA MER1_type -2196 224 167 5 1365 216 0 0 0 chr12 102294575 102294599 -18962931 + (GGGTG)n Simple_repeat Simple_repeat 2 25 0 5 1365 21 57 0 0 chr12 102294834 102294869 -18962661 + AT_rich Low_complexity Low_complexity 1 35 0 5 1365 29 70 0 0 chr12 102294882 102294939 -18962591 + AT_rich Low_complexity Low_complexity 1 57 0 5 1365 198 0 0 0 chr12 102295158 102295180 -18962350 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1365 198 267 144 29 chr12 102295973 102296077 -18961453 - MIRb SINE MIR -105 163 48 5 1365 207 0 0 0 chr12 102297233 102297256 -18960274 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1365 1009 101 127 0 chr12 102297655 102297813 -18959717 + B2_Mm1t SINE B2 2 179 -14 5 1365 194 91 30 0 chr12 102297815 102297848 -18959682 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1365 269 229 57 0 chr12 102297872 102297942 -18959588 + RMER15-int LTR ERVL 4311 4384 -615 5 1365 889 261 205 30 chr12 102297999 102298462 -18959068 + Lx8 LINE L1 6565 7108 -365 5 1365 263 219 69 179 chr12 102298958 102298990 -18958540 + MT2B LTR ERVL 151 230 -354 5 1365 384 240 177 0 chr12 102298990 102299086 -18958444 + B1_Mur1 SINE Alu 21 133 -16 5 1365 263 219 69 179 chr12 102299086 102299103 -18958427 + MT2B LTR ERVL 231 279 -305 5 1365 814 149 42 21 chr12 102299571 102299715 -18957815 + B1_Mur4 SINE Alu 2 148 -2 5 1365 249 312 48 55 chr12 102299741 102299887 -18957643 - B1F SINE Alu -3 146 2 5 1365 198 0 0 0 chr12 102300027 102300049 -18957481 + (CAG)n Simple_repeat Simple_repeat 2 23 0 5 1365 448 250 105 32 chr12 102300072 102300196 -18957334 + ID_B1 SINE B4 81 213 -11 5 1365 275 0 0 28 chr12 102300197 102300233 -18957297 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1365 532 259 52 46 chr12 102300263 102300457 -18957073 + B3A SINE B2 4 198 0 5 1365 767 318 0 70 chr12 102300484 102300711 -18956819 + ID_B1 SINE B4 9 219 -5 5 1365 602 77 308 0 chr12 102300755 102300859 -18956671 + B1_Mur4 SINE Alu 2 137 -13 5 1365 245 27 54 0 chr12 102300862 102300899 -18956631 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1365 725 50 242 8 chr12 102301289 102301409 -18956121 + B1_Mus1 SINE Alu 1 148 0 5 1365 706 285 64 77 chr12 102301431 102301578 -18955952 + L1MA4 LINE L1 5423 5578 -722 5 1365 1111 92 58 37 chr12 102301578 102301769 -18955761 - B2_Mm2 SINE B2 0 195 1 5 1365 706 285 64 77 chr12 102301769 102301832 -18955698 + L1MA4 LINE L1 5579 5623 -677 5 1365 2091 30 72 25 chr12 102301832 102302110 -18955420 - L1Md_F2 LINE L1 0 6582 6292 5 1365 706 285 64 77 chr12 102302110 102302365 -18955165 + L1MA4 LINE L1 5624 5883 -417 5 1365 486 178 101 11 chr12 102302438 102302562 -18954968 - PB1D9 SINE Alu 0 149 1 5 1365 235 157 59 0 chr12 102302569 102302620 -18954910 + L2 LINE L2 2528 2581 -838 5 1365 942 101 177 0 chr12 102302776 102302934 -18954596 - B2_Mm1a SINE B2 -6 187 2 5 1365 769 168 120 7 chr12 102303620 102303770 -18953760 - B3 SINE B2 -38 178 12 5 1365 500 301 7 34 chr12 102303902 102304050 -18953480 + B1F SINE Alu 1 144 -5 5 1365 923 249 31 0 chr12 102304211 102304404 -18953126 + B3 SINE B2 8 206 -10 5 1365 344 287 138 0 chr12 102304426 102304520 -18953010 - RSINE1 SINE B4 -56 109 3 5 1365 198 0 0 0 chr12 102304623 102304645 -18952885 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1365 331 319 107 14 chr12 102305690 102305830 -18951700 + RSINE1 SINE B4 3 155 -10 5 1365 295 297 206 61 chr12 102305877 102306042 -18951488 + B3 SINE B2 1 189 -27 5 1365 851 189 61 84 chr12 102306154 102306188 -18951342 + B3 SINE B2 3 28 -188 5 1365 1242 48 0 0 chr12 102306188 102306335 -18951195 + B1_Mus1 SINE Alu 2 148 0 5 1365 851 189 61 84 chr12 102306335 102306514 -18951016 + B3 SINE B2 29 211 -5 5 1365 231 250 0 0 chr12 102306645 102306689 -18950841 + RSINE1 SINE B4 91 134 -31 5 1365 265 194 39 77 chr12 102307030 102307108 -18950422 + B4 SINE B4 1 75 -217 5 1365 539 221 142 0 chr12 102307411 102307524 -18950006 + B1_Mus2 SINE Alu 9 137 -10 5 1365 1314 80 16 26 chr12 102308651 102308844 -18948686 - B2_Mm1t SINE B2 -1 192 2 6 1365 241 352 28 0 chr12 102308878 102308949 -18948581 + ID4_ SINE ID 9 81 -2 6 1365 510 221 82 65 chr12 102309145 102309329 -18948201 + B2_Mm2 SINE B2 5 191 -4 6 1365 967 63 0 0 chr12 102309366 102309493 -18948037 + B1_Mus2 SINE Alu 21 147 0 6 1365 1117 88 0 0 chr12 102309508 102309655 -18947875 + B1_Mus2 SINE Alu 1 147 0 6 1365 288 81 97 0 chr12 102309820 102309882 -18947648 + CT-rich Low_complexity Low_complexity 1 68 0 6 1365 1023 101 0 0 chr12 102309882 102310020 -18947510 - B1_Mus1 SINE Alu -8 140 3 6 1365 403 256 168 0 chr12 102310317 102310442 -18947088 + B3A SINE B2 50 195 -3 6 1365 434 54 0 0 chr12 102311055 102311111 -18946419 - B1_Mus1 SINE Alu -92 56 1 6 1365 429 267 92 0 chr12 102311121 102311241 -18946289 - B1F1 SINE Alu -7 142 12 6 1365 797 30 0 0 chr12 102311355 102311454 -18946076 + B1_Mm SINE Alu 48 146 -1 6 1365 747 243 74 46 chr12 102311546 102311762 -18945768 + B4 SINE B4 2 223 -69 6 1365 279 0 0 0 chr12 102311762 102311793 -18945737 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1365 906 91 90 8 chr12 102311801 102311934 -18945596 + B1_Mus2 SINE Alu 3 146 -1 6 1365 747 132 125 0 chr12 102312212 102312356 -18945174 + URR1B DNA MER1_type 64 225 0 6 1365 242 200 92 0 chr12 102312539 102312604 -18944926 + Charlie1b DNA MER1_type 376 446 -77 6 1365 22 0 0 0 chr12 102312917 102312939 -18944591 + AT_rich Low_complexity Low_complexity 1 22 0 6 1365 975 123 101 39 chr12 102312941 102313119 -18944411 + B2_Mm2 SINE B2 3 191 -4 6 1365 466 254 44 26 chr12 102313148 102313261 -18944269 + RSINE1 SINE B4 42 156 -9 6 1365 208 286 0 0 chr12 102313263 102313305 -18944225 - MIR SINE MIR -213 49 8 6 1365 602 261 50 11 chr12 102313509 102313681 -18943849 + B3A SINE B2 2 181 -12 6 1365 253 271 28 28 chr12 102313717 102313789 -18943741 + ID4_ SINE ID 12 83 0 6 1365 764 67 223 8 chr12 102313926 102314047 -18943483 + B1_Mus1 SINE Alu 2 148 0 6 1365 1215 41 0 7 chr12 102314261 102314408 -18943122 + B1_Mus2 SINE Alu 2 147 0 6 1365 180 0 0 0 chr12 102314408 102314428 -18943102 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1365 281 210 46 46 chr12 102314586 102314651 -18942879 + ID4_ SINE ID 3 67 -16 6 1365 254 340 27 27 chr12 102314908 102315020 -18942510 + PB1D10 SINE Alu 2 113 -4 6 1365 647 222 156 0 chr12 102315030 102315197 -18942333 + B3 SINE B2 15 207 -9 6 1365 960 197 85 0 chr12 102315282 102315470 -18942060 - B3 SINE B2 -11 205 2 6 1365 691 143 246 22 chr12 102315498 102315677 -18941853 + URR1A DNA MER1_type 1 219 -7 6 1365 802 205 112 30 chr12 102315710 102315985 -18941545 + ORR1D1 LTR MaLR 32 357 -2 6 1365 726 130 104 0 chr12 102316039 102316154 -18941376 + B2_Mm2 SINE B2 3 129 -66 6 1365 327 25 0 0 chr12 102316189 102316229 -18941301 + (CATA)n Simple_repeat Simple_repeat 2 41 0 6 1365 454 257 28 0 chr12 102316245 102316354 -18941176 + RSINE1 SINE B4 12 123 -42 6 1365 272 253 152 0 chr12 102316495 102316574 -18940956 + PB1 SINE Alu 1 91 -36 6 1365 242 220 0 39 chr12 102316794 102316846 -18940684 - ID_B1 SINE B4 0 224 175 6 1365 317 254 14 0 chr12 102316800 102316871 -18940659 - PB1D10 SINE Alu -6 111 40 6 1365 335 253 69 59 chr12 102316970 102317071 -18940459 + PB1D7 SINE Alu 3 104 -16 6 1365 382 270 130 0 chr12 102317073 102317173 -18940357 + B3 SINE B2 40 152 -64 6 1365 309 89 0 0 chr12 102317174 102317219 -18940311 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1365 599 302 78 19 chr12 102317384 102317590 -18939940 + ID_B1 SINE B4 3 220 -4 6 1365 1243 34 0 0 chr12 102317655 102317802 -18939728 + B1_Mus1 SINE Alu 2 148 0 6 1365 180 77 0 0 chr12 102317802 102317828 -18939702 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1365 289 347 7 45 chr12 102317954 102318108 -18939422 + MIR SINE MIR 115 262 0 6 1365 1449 63 10 16 chr12 102318207 102318401 -18939129 - B2_Mm1t SINE B2 0 193 1 6 1365 254 314 118 0 chr12 102318408 102318510 -18939020 - PB1D10 SINE Alu -1 116 3 6 1365 850 112 40 0 chr12 102318728 102318853 -18938677 - B1_Mus1 SINE Alu -16 132 3 6 1365 254 324 62 18 chr12 102318882 102318896 -18938634 + B4A SINE B4 75 93 -199 6 1365 389 297 18 0 chr12 102318896 102319007 -18938523 + B1F1 SINE Alu 2 114 -35 6 1365 420 270 54 31 chr12 102319009 102319139 -18938391 + ID_B1 SINE B4 86 218 -6 6 1365 301 167 16 62 chr12 102319254 102319318 -18938212 + ID4 SINE ID 10 70 -13 6 1365 432 206 32 21 chr12 102319502 102319596 -18937934 - B1_Mur1 SINE Alu -8 141 47 6 1365 725 173 72 0 chr12 102320198 102320337 -18937193 + B1_Mur3 SINE Alu 1 149 0 6 1365 21 0 0 0 chr12 102321083 102321104 -18936426 + GC_rich Low_complexity Low_complexity 1 21 0 6 1365 233 111 0 43 chr12 102322104 102322151 -18935379 + CT-rich Low_complexity Low_complexity 1 45 0 6 1365 607 134 294 50 chr12 102322746 102322926 -18934604 - URR1A DNA MER1_type 0 226 3 6 1365 1073 257 88 43 chr12 102323290 102323619 -18933911 - MTD LTR MaLR -58 361 18 6 1365 891 49 97 8 chr12 102323834 102323958 -18933572 + B1_Mus2 SINE Alu 2 136 -11 6 1365 875 15 53 0 chr12 102323958 102324091 -18933439 + (GA)n Simple_repeat Simple_repeat 1 140 0 6 1365 268 304 12 38 chr12 102324240 102324339 -18933191 - ID4 SINE ID -51 101 6 6 1365 231 279 25 25 chr12 102324487 102324568 -18932962 - YREP_Mm Unknown Unknown -1510 302 222 6 1365 441 183 61 0 chr12 102324497 102324579 -18932951 + ID_B1 SINE B4 107 193 -31 6 1365 21 0 0 0 chr12 102324830 102324851 -18932679 + AT_rich Low_complexity Low_complexity 1 21 0 6 1365 630 277 11 42 chr12 102324884 102325063 -18932467 - ID_B1 SINE B4 -40 252 81 6 1365 289 247 116 12 chr12 102325148 102325234 -18932296 - PB1D10 SINE Alu -19 98 4 6 1365 3313 144 131 33 chr12 102325611 102326299 -18931231 - RMER6A LTR ERVK 0 756 2 6 1365 1127 83 0 0 chr12 102326402 102326547 -18930983 - B1_Mus2 SINE Alu -1 146 2 6 1365 802 257 19 10 chr12 102326569 102326777 -18930753 - B3 SINE B2 -6 210 1 6 1365 1225 41 0 0 chr12 102326835 102326980 -18930550 - B1_Mus1 SINE Alu -2 146 2 6 1365 509 295 0 47 chr12 102326984 102327112 -18930418 + RSINE1 SINE B4 11 132 -33 6 1365 384 237 0 0 chr12 102327219 102327295 -18930235 + PB1D9 SINE Alu 3 78 -42 6 1365 383 98 16 0 chr12 102327304 102327365 -18930165 + (GAA)n Simple_repeat Simple_repeat 2 63 0 6 1365 440 261 26 18 chr12 102327365 102327478 -18930052 + B3 SINE B2 27 140 -76 6 1365 1247 48 0 0 chr12 102327506 102327653 -18929877 - B1_Mus2 SINE Alu 0 147 1 6 1365 825 291 5 5 chr12 102327754 102327968 -18929562 + ID_B1 SINE B4 1 214 -10 6 1365 377 291 55 12 chr12 102327990 102328119 -18929411 + B1F SINE Alu 1 137 -12 6 1365 214 276 33 49 chr12 102328103 102328164 -18929366 - PB1D7 SINE Alu -15 105 46 6 1365 439 323 30 54 chr12 102328200 102328535 -18928995 + MLT1G3 LTR MaLR 111 485 -84 6 1365 206 163 23 0 chr12 102328627 102328670 -18928860 + T-rich Low_complexity Low_complexity 3 46 0 6 1365 959 120 28 0 chr12 102328672 102328814 -18928716 - B1_Mur4 SINE Alu -1 149 4 6 1365 580 317 76 24 chr12 102328947 102329157 -18928373 + B4A SINE B4 26 246 -46 6 1365 536 326 0 28 chr12 102329164 102329306 -18928224 + B3A SINE B2 54 191 -7 6 1365 262 275 43 14 chr12 102329301 102329371 -18928159 + B4A SINE B4 216 287 -5 6 1365 302 288 0 0 chr12 102329467 102329533 -18927997 - ID4_ SINE ID -15 68 3 6 1365 326 350 0 106 chr12 102329762 102329922 -18927608 - ID_B1 SINE B4 0 224 82 6 1365 1805 123 5 126 chr12 102329927 102330299 -18927231 - ORR1A4 LTR MaLR -2 327 1 6 1365 5835 130 11 118 chr12 102330299 102331441 -18926089 - ORR1A4-int LTR MaLR 0 1963 944 6 1365 1240 156 110 4 chr12 102331442 102331687 -18925843 + L1VL2 LINE L1 97 367 -5968 6 1365 7218 158 6 30 chr12 102331685 102332459 -18925071 + Lx LINE L1 4546 5293 -590 6 1365 1644 27 0 0 chr12 102332459 102332646 -18924884 + B2_Mm1a SINE B2 1 187 -6 6 1365 7364 135 10 31 chr12 102332646 102333113 -18924417 + Lx LINE L1 5294 5767 -116 6 1365 1231 41 7 0 chr12 102333113 102333259 -18924271 + B1_Mm SINE Alu 1 147 0 6 1365 7364 98 18 34 chr12 102333259 102334162 -18923368 + Lx LINE L1 5768 6654 0 6 1365 201 147 0 0 chr12 102334170 102334204 -18923326 + (TATG)n Simple_repeat Simple_repeat 3 36 0 6 1365 459 0 0 0 chr12 102334230 102334281 -18923249 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 1365 3414 197 55 37 chr12 102334289 102335232 -18922298 - ORR1A4-int LTR MaLR -1003 960 1 6 1365 1111 149 25 142 chr12 102335236 102335308 -18922222 - ORR1A4 LTR MaLR -8 321 287 6 1365 1252 41 0 0 chr12 102335308 102335454 -18922076 - B1_Mus2 SINE Alu 0 147 2 6 1365 1186 145 29 10 chr12 102335454 102335663 -18921867 - ORR1A4 LTR MaLR -42 285 73 6 1365 933 185 127 73 chr12 102335663 102335908 -18921622 + RMER13B LTR ERVK 1 258 -650 6 1365 1591 124 124 0 chr12 102335908 102336199 -18921331 + IAPEY3_LTR LTR ERVK 1 327 -5 6 1365 921 103 19 52 chr12 102336202 102336356 -18921174 + IAPEY3-int LTR ERVK 1 149 -7531 6 1365 1035 139 68 33 chr12 102336354 102336681 -18920849 + IAPEY3-int LTR ERVK 538 952 -6629 6 1365 1927 188 166 28 chr12 102336805 102337298 -18920232 + RMER16-int LTR ERVK 255 815 -4591 6 1365 294 192 58 0 chr12 102337293 102337345 -18920185 + RMER16-int LTR ERVK 950 1004 -983 6 1365 275 313 17 9 chr12 102337476 102337592 -18919938 + IAPEY3-int LTR ERVK 822 938 -5604 6 1365 273 282 13 0 chr12 102337645 102337723 -18919807 + IAPEY3-int LTR ERVK 1488 1566 -6015 6 1365 265 170 75 0 chr12 102337740 102337793 -18919737 + IAP-d-int LTR ERVK 447 503 -6039 6 1365 1489 103 112 0 chr12 102337793 102338017 -18919513 + IAP-d-int LTR ERVK 5007 5255 -1287 6 1365 1804 127 49 1 chr12 102338017 102338349 -18919181 + IAPEY3-int LTR ERVK 6965 7338 -342 6 1365 1312 218 52 20 chr12 102338366 102338712 -18918818 + IAPEz-int LTR ERVK 6125 6481 0 6 1365 1598 124 124 0 chr12 102338712 102339003 -18918527 + IAPEY3_LTR LTR ERVK 1 327 -5 6 1365 1981 225 71 58 chr12 102339006 102339643 -18917887 + RMER13B LTR ERVK 253 897 -11 6 1365 484 129 0 0 chr12 102339657 102339742 -18917788 - ORR1A4 LTR MaLR -244 85 1 6 1365 473 216 113 33 chr12 102339782 102340051 -18917479 + L1M4 LINE L1 5224 5517 -725 7 1365 207 100 0 0 chr12 102340207 102340237 -18917293 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1365 313 315 52 46 chr12 102340279 102340432 -18917098 + RLTR11A2 LTR ERVK 40 193 -334 7 1365 1134 69 14 0 chr12 102340432 102340576 -18916954 + B1_Mus2 SINE Alu 2 147 0 7 1365 270 95 0 0 chr12 102340576 102340618 -18916912 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1365 798 229 53 0 chr12 102341001 102341171 -18916359 + B3 SINE B2 38 216 0 7 1365 237 125 0 0 chr12 102341369 102341409 -18916121 - MTD LTR MaLR 0 419 380 7 1365 225 154 0 0 chr12 102341498 102341537 -18915993 + T-rich Low_complexity Low_complexity 1 39 0 7 1365 1278 34 0 0 chr12 102341537 102341684 -18915846 - B1_Mm SINE Alu 0 147 1 7 1365 297 0 0 0 chr12 102342627 102342660 -18914870 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1365 235 262 0 16 chr12 102343881 102343943 -18913587 + G-rich Low_complexity Low_complexity 4 64 0 7 1365 2554 184 70 40 chr12 102344152 102344810 -18912720 - RLTR22_Mur LTR ERVK -220 1628 931 7 1365 1777 51 5 0 chr12 102344810 102345024 -18912506 - L1_Mus4 LINE L1 -309 6327 6113 7 1365 2043 91 0 16 chr12 102345024 102345327 -18912203 + L1_Mus4 LINE L1 6338 6635 -1 7 1365 3280 204 72 27 chr12 102345327 102345733 -18911797 - RLTR22_Mur LTR ERVK -736 1072 637 7 1365 2547 74 12 3 chr12 102345733 102346057 -18911473 - ORR1A2 LTR MaLR 0 327 1 7 1365 3280 163 62 15 chr12 102346057 102346514 -18911016 - RLTR22_Mur LTR ERVK -1212 636 159 7 1365 225 0 0 0 chr12 102346514 102346539 -18910991 + (TA)n Simple_repeat Simple_repeat 2 26 0 7 1365 3280 163 62 15 chr12 102346539 102346700 -18910830 - RLTR22_Mur LTR ERVK -1690 158 1 7 1365 3581 199 61 67 chr12 102346700 102347154 -18910376 - MTD-int LTR MaLR -240 1018 555 7 1365 2350 169 96 34 chr12 102347154 102347656 -18909874 + RMER16 LTR ERVK 1 533 0 7 1365 3581 199 61 67 chr12 102347656 102347749 -18909781 - MTD-int LTR MaLR -704 554 471 7 1365 6947 68 21 5 chr12 102347749 102348636 -18908894 - RLTR13D6 LTR ERVK 0 902 1 7 1365 3581 199 61 67 chr12 102348636 102349092 -18908438 - MTD-int LTR MaLR -788 470 20 7 1365 1083 254 54 5 chr12 102349114 102349456 -18908074 - MTD LTR MaLR -8 413 34 7 1365 7870 73 15 12 chr12 102349539 102350559 -18906971 - RLTR13D5 LTR ERVK 0 1023 1 7 1365 206 154 76 15 chr12 102350604 102350670 -18906860 + (TA)n Simple_repeat Simple_repeat 1 70 0 7 1365 535 230 53 0 chr12 102350838 102350951 -18906579 - B1_Mur1 SINE Alu -15 134 16 7 1365 264 207 17 33 chr12 102351282 102351342 -18906188 + B1_Mus2 SINE Alu 1 59 -88 7 1365 509 149 0 0 chr12 102351424 102351511 -18906019 + B1_Mus2 SINE Alu 42 128 -19 7 1365 3037 156 70 19 chr12 102351511 102352203 -18905327 - RMER6A LTR ERVK 0 756 1 7 1365 718 209 0 26 chr12 102352364 102352516 -18905014 + B1_Mur1 SINE Alu 2 149 0 7 1365 219 69 0 0 chr12 102352921 102352950 -18904580 + (CAT)n Simple_repeat Simple_repeat 2 30 0 7 1365 394 288 137 0 chr12 102352979 102353132 -18904398 - B3 SINE B2 -42 174 1 7 1365 1176 285 91 0 chr12 102353603 102353933 -18903597 - ORR1D2 LTR MaLR -9 361 2 7 1365 1152 76 0 0 chr12 102354284 102354429 -18903101 - B1_Mus1 SINE Alu -2 146 2 7 1365 1679 162 14 19 chr12 102354528 102354940 -18902590 + RLTR22_Mur LTR ERVK 1 417 -905 7 1365 6638 85 18 9 chr12 102354941 102356567 -18900963 + Lx2 LINE L1 378 1994 -1920 7 1365 547 43 0 0 chr12 102356989 102357058 -18900472 - L1_Mus2 LINE L1 -607 5959 5891 7 1365 4621 142 12 19 chr12 102357044 102357793 -18899737 - L1_Mur2 LINE L1 -111 5766 5023 7 1365 3261 134 25 9 chr12 102357792 102358319 -18899211 + L1_Mur2 LINE L1 4473 5007 -870 7 1365 288 211 14 0 chr12 102358345 102358416 -18899114 - Tigger5 DNA MER2_type -13 2393 2322 7 1365 1068 269 111 52 chr12 102358412 102358907 -18898623 + MT2A LTR ERVL 10 533 0 7 1365 1765 199 32 19 chr12 102359144 102359513 -18898017 + ORR1D1 LTR MaLR 1 374 0 7 1365 519 223 124 0 chr12 102359523 102359644 -18897886 + B1_Mur2 SINE Alu 3 138 -11 7 1365 423 0 0 0 chr12 102359644 102359691 -18897839 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1365 701 345 10 0 chr12 102359751 102359960 -18897570 - B4 SINE B4 -79 213 3 7 1365 220 273 19 0 chr12 102360217 102360277 -18897253 - ID4_ SINE ID -61 91 31 7 1365 29 78 0 0 chr12 102360323 102360387 -18897143 + AT_rich Low_complexity Low_complexity 1 64 0 7 1365 1560 52 0 10 chr12 102360504 102360697 -18896833 + B2_Mm1a SINE B2 2 192 -1 7 1365 305 246 0 28 chr12 102360703 102360774 -18896756 - MER2 DNA MER2_type -31 314 246 7 1365 548 280 35 0 chr12 102360775 102360918 -18896612 + B3 SINE B2 2 149 -67 7 1365 407 229 134 50 chr12 102360933 102361112 -18896418 - B3A SINE B2 0 198 5 7 1365 265 309 65 9 chr12 102361307 102361415 -18896115 + Kanga1b DNA Tc2 25 138 -641 7 1365 233 220 0 20 chr12 102361430 102361481 -18896049 - MER2 DNA MER2_type -31 314 265 7 1365 759 235 74 15 chr12 102361497 102361700 -18895830 + B3 SINE B2 2 216 0 7 1365 363 201 90 37 chr12 102361718 102361852 -18895678 - MER2 DNA MER2_type -84 261 121 7 1365 1410 71 16 11 chr12 102362240 102362426 -18895104 - B2_Mm2 SINE B2 -4 191 5 7 1365 317 275 67 67 chr12 102362451 102362646 -18894884 + L1ME2 LINE L1 4975 5169 -977 7 1365 23983 184 78 16 chr12 102362641 102363745 -18893785 + Lx2 LINE L1 409 1594 -4292 7 1365 1144 95 0 0 chr12 102363745 102363892 -18893638 + B1_Mm SINE Alu 1 147 0 7 170 23983 169 19 25 chr12 102363892 102367241 -18890289 + Lx2 LINE L1 1595 4960 -926 7 1366 1229 48 0 7 chr12 102367241 102367389 -18890141 + B1_Mus1 SINE Alu 1 147 -1 7 1366 23983 139 19 14 chr12 102367389 102369480 -18888050 + Lx2 LINE L1 4961 6997 0 7 1366 1144 106 15 41 chr12 102369757 102369953 -18887577 - ORR1A2 LTR MaLR 0 327 137 7 1366 2127 87 3 10 chr12 102370100 102370406 -18887124 + RMER17A LTR ERVK 1 418 -333 7 1366 828 53 52 7 chr12 102370406 102370559 -18886971 + (TC)n Simple_repeat Simple_repeat 2 161 0 7 1366 2127 122 13 21 chr12 102370559 102370891 -18886639 + RMER17A LTR ERVK 419 751 0 7 1366 251 202 83 125 chr12 102370895 102370991 -18886539 + MT2B LTR ERVL 166 257 -344 7 1366 780 127 0 8 chr12 102370908 102371035 -18886495 + B1_Mur2 SINE Alu 23 148 -1 7 1366 550 326 57 33 chr12 102371056 102371513 -18886017 + L1ME2 LINE L1 5469 5936 -228 7 1366 3234 68 9 5 chr12 102371591 102372022 -18885508 + L1_Mus3 LINE L1 6206 6638 0 7 1366 638 291 16 12 chr12 102372450 102372694 -18884836 + L1MA6 LINE L1 5815 6059 -241 7 1366 543 291 0 20 chr12 102372904 102373055 -18884475 + B1_Mur1 SINE Alu 2 149 0 7 1366 460 138 50 0 chr12 102373059 102373139 -18884391 - MTC LTR MaLR -316 105 22 7 1366 251 171 214 0 chr12 102373183 102373253 -18884277 - MER53 DNA hAT 0 193 109 7 1366 587 275 63 28 chr12 102373501 102373755 -18883775 + RMER15 LTR ERVL 310 572 -3 7 1366 38719 33 1 2 chr12 102374497 102382013 -18875517 - L1Md_T LINE L1 0 6585 1 7 1366 189 0 0 0 chr12 102382018 102382039 -18875491 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1366 337 309 88 30 chr12 102382069 102382466 -18875064 + L1MEb LINE L1 610 1029 -5107 7 1366 327 314 47 23 chr12 102382963 102383178 -18874352 + L1MEb LINE L1 1331 1550 -4692 7 1366 486 323 80 4 chr12 102383220 102383484 -18874046 + L1MEb LINE L1 4401 4684 -1462 7 1366 270 0 0 0 chr12 102383573 102383603 -18873927 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1366 34007 64 4 2 chr12 102388238 102394377 -18863153 - L1Md_F2 LINE L1 0 6585 340 7 1366 4932 146 201 6 chr12 102394381 102395524 -18862006 - L1_Mm LINE L1 -1428 4455 3090 7 1366 180 227 0 102 chr12 102395799 102395848 -18861682 + MIRm SINE MIR 25 68 -208 7 1366 878 331 28 25 chr12 102396467 102396976 -18860554 + MuRRS4-int LTR ERV1 1186 1695 -3368 7 1366 642 301 44 51 chr12 102397111 102397521 -18860009 + MuRRS4-int LTR ERV1 1810 2216 -2474 7 1366 713 264 41 49 chr12 102397585 102397852 -18859678 + RLTR6-int LTR ERV1 5041 5381 -2397 7 1366 293 337 0 0 chr12 102398051 102398149 -18859381 + RLTR6-int LTR ERV1 5492 5589 -2012 7 1366 411 255 12 78 chr12 102398232 102398398 -18859132 - RNLTR23 LTR ERVK -8 634 480 7 1366 195 42 0 0 chr12 102399496 102399520 -18858010 + (C)n Simple_repeat Simple_repeat 1 24 0 7 1366 523 325 27 17 chr12 102400054 102400351 -18857179 + RLTR6-int LTR ERV1 7351 7650 -128 7 1366 2408 213 44 95 chr12 102401118 102401709 -18855821 - RMER13B LTR ERVK -343 565 5 7 1366 438 262 74 8 chr12 102401732 102401940 -18855590 - L1VL2 LINE L1 -5936 399 51 7 1366 598 168 0 0 chr12 102401936 102402043 -18855487 - L1_Mur2 LINE L1 -434 5443 5337 7 1366 2976 157 21 5 chr12 102402035 102402599 -18854931 - Lx2B LINE L1 -274 6726 6154 7 1366 2972 119 11 4 chr12 102402596 102403060 -18854470 + Lx4A LINE L1 6351 6817 -241 7 1366 271 156 0 0 chr12 102403051 102403128 -18854402 + Lx4A LINE L1 6975 7051 -7 7 1366 426 283 30 29 chr12 102404089 102404275 -18853255 + B4 SINE B4 2 219 -73 7 1366 4948 117 20 5 chr12 102404545 102404707 -18852823 + L1_Mus3 LINE L1 5071 5232 -651 7 1366 621 0 0 0 chr12 102404707 102404776 -18852754 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 1366 4948 91 16 3 chr12 102404776 102405452 -18852078 + L1_Mus3 LINE L1 5233 5921 -717 7 1366 827 215 55 154 chr12 102405464 102405643 -18851887 - MTD LTR MaLR -55 364 211 7 1366 642 290 88 0 chr12 102405643 102405836 -18851694 - B3 SINE B2 -6 210 1 7 1366 827 215 55 154 chr12 102405836 102405909 -18851621 - MTD LTR MaLR -209 210 137 7 1366 5604 125 32 18 chr12 102405952 102407443 -18850087 + L1_Mus1 LINE L1 5465 6996 -1 7 1366 27039 96 16 25 chr12 102408628 102410718 -18846812 - L1_Mus2 LINE L1 0 6566 4463 7 1366 218 301 34 67 chr12 102410718 102410807 -18846723 - B4 SINE B4 -205 87 2 7 1366 27039 96 16 25 chr12 102410807 102413884 -18843646 - L1_Mus2 LINE L1 0 4462 1364 7 1366 2500 171 46 22 chr12 102413908 102414518 -18843012 - L1Md_F LINE L1 -5411 1208 561 7 1366 5038 99 25 62 chr12 102415313 102415756 -18841774 - Lx3_Mus LINE L1 -834 6175 5744 7 1366 816 98 138 0 chr12 102415756 102415879 -18841651 - B1_Mus1 SINE Alu -8 140 1 7 1366 5038 90 15 52 chr12 102415879 102416534 -18840996 - Lx3_Mus LINE L1 -140 5746 5095 7 1366 2773 224 391 21 chr12 102416528 102416767 -18840763 - Lx7 LINE L1 -14 7682 7361 7 1366 573 42 0 0 chr12 102416767 102416839 -18840691 + (CAAAA)n Simple_repeat Simple_repeat 2 73 0 7 1366 2773 241 85 8 chr12 102416839 102417507 -18840023 - Lx7 LINE L1 -336 7360 6634 7 1366 799 256 5 25 chr12 102417536 102417732 -18839798 - Lx7 LINE L1 -1148 6548 6357 7 1366 355 244 137 17 chr12 102417763 102417880 -18839650 + B1_Mur1 SINE Alu 13 143 -6 7 1366 586 262 35 56 chr12 102418027 102418225 -18839305 - LTR40b LTR ERVL 0 462 269 7 1366 661 264 133 99 chr12 102418227 102418572 -18838958 - MLT1B LTR MaLR -8 382 26 7 1366 326 312 56 0 chr12 102418667 102418792 -18838738 - LTR40b LTR ERVL -329 136 5 7 1366 24 85 0 0 chr12 102419200 102419259 -18838271 + AT_rich Low_complexity Low_complexity 1 59 0 7 1366 5634 109 23 2 chr12 102419739 102420559 -18836971 - Lx3A LINE L1 -3 6978 6142 7 1366 17654 91 18 9 chr12 102420559 102422611 -18834919 - L1_Mur1 LINE L1 -757 5129 3071 7 1366 879 10 0 0 chr12 102422611 102422711 -18834819 + (TTC)n Simple_repeat Simple_repeat 3 102 0 7 1366 17654 91 18 9 chr12 102422711 102423438 -18834092 - L1_Mur1 LINE L1 -2816 3070 2326 7 1366 4563 48 5 21 chr12 102423435 102424052 -18833478 - L1_Mus1 LINE L1 -138 6429 5823 7 1366 740 80 18 0 chr12 102424052 102424164 -18833366 + L1_Mus1 LINE L1 6454 6567 0 7 1366 6848 99 17 1 chr12 102424260 102425468 -18832062 - L1_Mur1 LINE L1 -3551 2335 1108 7 1366 9585 56 1 13 chr12 102425465 102427483 -18830047 - L1Md_F2 LINE L1 0 6582 4590 8 1366 2563 199 34 30 chr12 102427483 102428257 -18829273 - L1_Mur1 LINE L1 -5875 1109 31 7 1366 1023 90 7 14 chr12 102428282 102428429 -18829101 - B1_Mus1 SINE Alu -1 147 2 8 1366 29 70 0 0 chr12 102428642 102428699 -18828831 + AT_rich Low_complexity Low_complexity 1 57 0 8 1366 269 340 75 44 chr12 102428723 102428883 -18828647 + MER5B DNA MER1_type 12 176 -2 8 1366 837 284 50 35 chr12 102429643 102430336 -18827194 - L1MA6 LINE L1 -361 5936 5255 8 1366 26634 138 18 35 chr12 102430395 102432913 -18824617 + L1_Mus3 LINE L1 676 3156 -2727 8 1366 225 0 0 0 chr12 102432913 102432938 -18824592 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 8 1366 26634 125 18 13 chr12 102432938 102434005 -18823525 + L1_Mus3 LINE L1 3157 4199 -1684 8 1366 4483 74 2 0 chr12 102434005 102434589 -18822941 - L1_Mus2 LINE L1 0 6566 5982 8 1366 26634 118 27 11 chr12 102434589 102436990 -18820540 + L1_Mus3 LINE L1 4200 6637 -1 8 1366 340 246 87 0 chr12 102436991 102437129 -18820401 - L1_Mur3 LINE L1 -907 5233 5084 8 1366 287 313 20 10 chr12 102437139 102437239 -18820291 + B2_Mm2 SINE B2 1 101 -94 8 1366 477 256 20 7 chr12 102437340 102437519 -18820011 - L1_Mur3 LINE L1 -1093 5047 4860 8 1366 617 252 7 14 chr12 102437519 102437660 -18819870 - B1_Mm SINE Alu -1 146 7 8 1366 951 285 128 58 chr12 102437670 102438679 -18818851 - L1_Mur3 LINE L1 -1015 4865 3786 8 1366 7858 167 14 10 chr12 102438719 102440286 -18817244 - Lx4B LINE L1 -5 7053 5473 8 1366 413 92 0 13 chr12 102440330 102440407 -18817123 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 1366 271 321 53 10 chr12 102440594 102440896 -18816634 - L1M3 LINE L1 -2694 3446 3132 8 1366 3457 125 14 16 chr12 102440900 102441454 -18816076 - Lx2 LINE L1 -1 6996 6444 8 1366 341 156 51 25 chr12 102441488 102441567 -18815963 - L1_Mur1 LINE L1 -6842 140 60 8 1366 756 274 122 42 chr12 102442405 102442759 -18814771 - MER34A LTR ERV1 -3 568 187 8 1366 335 209 0 15 chr12 102442771 102442839 -18814691 - MER34A LTR ERV1 -504 67 1 8 1366 205 182 0 0 chr12 102443694 102443738 -18813792 + T-rich Low_complexity Low_complexity 2 45 0 8 1366 3158 78 42 16 chr12 102444711 102445245 -18812285 + L1_Mus3 LINE L1 5828 6438 -200 8 1366 22 56 0 0 chr12 102445581 102445617 -18811913 + AT_rich Low_complexity Low_complexity 1 36 0 8 1366 378 0 0 0 chr12 102446002 102446044 -18811486 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1366 337 315 42 7 chr12 102446259 102446403 -18811127 + B1F2 SINE Alu 1 149 0 8 1366 4575 62 40 3 chr12 102446454 102447074 -18810456 + L1_Mus2 LINE L1 5897 6540 -26 8 1366 2256 56 3 29 chr12 102447074 102447330 -18810200 + L1Md_A LINE L1 6281 6537 -45 8 1366 3549 18 0 0 chr12 102447330 102447726 -18809804 + MTA_Mm LTR MaLR 1 396 0 8 1366 9084 14 35 3 chr12 102447726 102448790 -18808740 + MTA_Mm-int LTR MaLR 1 1098 0 8 1366 3549 18 0 0 chr12 102448790 102449186 -18808344 + MTA_Mm LTR MaLR 1 396 0 8 1366 2256 56 3 29 chr12 102449186 102449237 -18808293 + L1Md_A LINE L1 6538 6580 -2 8 1366 4575 62 40 3 chr12 102449237 102449249 -18808281 + L1_Mus2 LINE L1 6541 6552 -14 8 1366 696 67 28 46 chr12 102449258 102449367 -18808163 + ORR1A3-int LTR MaLR 1029 1135 -828 8 1366 427 235 0 27 chr12 102449636 102449730 -18807800 + (TA)n Simple_repeat Simple_repeat 2 92 0 8 1366 591 51 0 0 chr12 102449730 102449809 -18807721 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1366 427 235 0 27 chr12 102449809 102449898 -18807632 + (TA)n Simple_repeat Simple_repeat 1 87 0 8 1366 1013 48 0 0 chr12 102449966 102450091 -18807439 - B1_Mm SINE Alu 0 147 23 8 1366 9134 9 0 0 chr12 102450311 102452087 -18805443 - L1Md_A LINE L1 0 6582 4807 8 1366 1077 70 0 0 chr12 102452092 102452235 -18805295 + (TTTC)n Simple_repeat Simple_repeat 3 145 0 8 1366 3062 128 22 2 chr12 102452235 102452785 -18804745 - L1VL4 LINE L1 -1280 2279 1719 8 1366 7777 37 5 1 chr12 102452776 102454127 -18803403 - L1Md_F2 LINE L1 -7 6575 5221 8 1366 4685 135 16 17 chr12 102454109 102455462 -18802068 - L1VL4 LINE L1 -1812 1747 400 8 1366 282 87 0 0 chr12 102455465 102455511 -18802019 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 8 1366 962 167 11 6 chr12 102455511 102455686 -18801844 - Lx4A LINE L1 -11 7047 6872 8 1366 638 232 49 7 chr12 102455710 102455853 -18801677 - B3 SINE B2 -67 149 1 8 1366 668 269 12 12 chr12 102455860 102456108 -18801422 - L1M2 LINE L1 -2395 3748 3501 8 1366 22 88 0 0 chr12 102456590 102456647 -18800883 + AT_rich Low_complexity Low_complexity 1 57 0 8 1366 377 200 59 59 chr12 102456726 102456825 -18800705 - B3 SINE B2 0 216 118 8 1366 1375 138 11 109 chr12 102456825 102457110 -18800420 - RLTR22_Mur LTR ERVK -2 1846 1590 8 1366 1092 150 11 0 chr12 102457264 102457451 -18800079 - RLTR22_Mur LTR ERVK -1035 813 625 8 1366 2220 161 44 28 chr12 102457461 102457896 -18799634 - RLTR22_Mur LTR ERVK -1406 442 1 8 1366 330 257 0 0 chr12 102457897 102457967 -18799563 - B3 SINE B2 -92 124 55 8 1366 260 301 61 9 chr12 102457942 102458056 -18799474 + RMER12 LTR ERVK 737 856 -466 8 1366 23 0 0 0 chr12 102458157 102458180 -18799350 + AT_rich Low_complexity Low_complexity 1 23 0 8 1366 270 253 11 92 chr12 102458281 102458368 -18799162 - ID2 SINE ID 0 83 4 8 1366 821 155 267 0 chr12 102458595 102458756 -18798774 + B3 SINE B2 1 204 -12 8 1366 216 0 0 0 chr12 102458756 102458780 -18798750 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 8 1366 471 326 21 14 chr12 102458867 102459010 -18798520 - B1_Mur1 SINE Alu -3 146 3 8 1366 379 267 39 101 chr12 102458900 102459029 -18798501 - MT2B LTR ERVL -335 266 146 8 1366 28 0 0 0 chr12 102459150 102459178 -18798352 + AT_rich Low_complexity Low_complexity 1 28 0 8 1366 333 329 45 58 chr12 102459562 102459717 -18797813 + B4A SINE B4 2 154 -138 8 1366 371 103 59 0 chr12 102459849 102459917 -18797613 - RMER12B LTR ERVK -503 901 830 8 1366 7322 41 1 3 chr12 102460886 102461801 -18795729 - L1Md_F2 LINE L1 -12 6570 5655 8 1366 963 19 0 0 chr12 102461801 102461908 -18795622 - U6 snRNA snRNA 0 107 1 8 1366 5806 61 25 19 chr12 102461917 102462700 -18794830 - L1_Mus2 LINE L1 -1 6565 5778 8 1366 327 93 0 0 chr12 102462700 102462743 -18794787 - URR1A DNA MER1_type -126 100 58 8 1366 705 53 0 0 chr12 102463120 102463214 -18794316 + L1_Mm LINE L1 2197 2290 -3593 8 1366 4763 156 38 11 chr12 102463214 102464048 -18793482 - RMER12B LTR ERVK -545 859 3 8 1366 813 260 11 11 chr12 102464092 102464275 -18793255 + B3 SINE B2 2 184 -32 8 1366 183 80 0 0 chr12 102464277 102464302 -18793228 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1366 665 325 100 0 chr12 102464437 102464668 -18792862 + B4 SINE B4 1 254 -38 8 1366 408 40 0 0 chr12 102464684 102464734 -18792796 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1366 1403 203 47 37 chr12 102465245 102465567 -18791963 - RLTR28B LTR ERVL -4 477 153 8 1366 4849 115 22 9 chr12 102465591 102466243 -18791287 - L1_Mus3 LINE L1 0 6638 5980 8 1366 3352 28 5 8 chr12 102466243 102466640 -18790890 + MTA_Mm LTR MaLR 1 396 0 8 1366 4849 115 22 9 chr12 102466640 102466753 -18790777 - L1_Mus3 LINE L1 -659 5979 5863 8 1366 7562 46 0 3 chr12 102466773 102467801 -18789729 - L1Md_F2 LINE L1 -13 6569 5546 8 1366 22973 78 7 1 chr12 102467801 102471906 -18785624 - L1Md_F2 LINE L1 -1456 4427 296 8 1366 23 0 0 0 chr12 102471909 102471932 -18785598 + AT_rich Low_complexity Low_complexity 1 23 0 8 1366 6891 92 11 2 chr12 102471932 102473514 -18784016 - L1_Mus1 LINE L1 0 6567 4973 8 1366 27243 92 9 94 chr12 102473512 102480034 -18777496 - L1Md_F2 LINE L1 -1 6581 423 8 1366 2857 51 3 0 chr12 102480255 102480628 -18776902 + L1Md_F2 LINE L1 5212 5585 -298 8 1366 8269 36 1 7 chr12 102480629 102481617 -18775913 + L1Md_F2 LINE L1 5587 6568 -14 8 1366 4704 77 22 6 chr12 102481630 102482273 -18775257 + L1Md_F2 LINE L1 5929 6581 -1 8 1366 186 43 0 0 chr12 102482477 102482500 -18775030 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 8 1366 400 38 0 0 chr12 102482766 102482819 -18774711 - B2_Mm1a SINE B2 -14 179 127 8 1366 270 56 0 0 chr12 102482856 102482892 -18774638 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 8 1366 1066 122 0 0 chr12 102482893 102483049 -18774481 - B2_Mm2 SINE B2 -37 158 3 8 1366 617 267 152 6 chr12 102483299 102483476 -18774054 - B3 SINE B2 -13 203 1 8 1366 986 73 0 0 chr12 102483590 102483727 -18773803 + L1Md_F2 LINE L1 6434 6570 -12 8 1366 241 325 62 38 chr12 102484127 102484207 -18773323 + 7SLRNA srpRNA srpRNA 4 85 -229 8 1366 1063 180 162 102 chr12 102484317 102484632 -18772898 - RMER16 LTR ERVK -2 531 198 8 1366 744 126 0 0 chr12 102484742 102484893 -18772637 + (TATG)n Simple_repeat Simple_repeat 2 152 0 8 1366 1212 50 0 12 chr12 102484905 102485066 -18772464 - MTA_Mm LTR MaLR -237 159 1 8 1366 7330 86 8 49 chr12 102485066 102485822 -18771708 - MTA_Mm-int LTR MaLR 0 1098 391 8 1366 3099 61 8 0 chr12 102485822 102486217 -18771313 - L1Md_F3 LINE L1 -12 6572 6175 8 1366 7330 86 8 49 chr12 102486217 102486605 -18770925 - MTA_Mm-int LTR MaLR -708 390 1 8 1366 3365 28 5 5 chr12 102486605 102487001 -18770529 - MTA_Mm LTR MaLR 0 396 1 8 1366 27325 83 36 37 chr12 102487001 102491490 -18766040 + L1Md_F2 LINE L1 1005 5589 -297 8 1366 6935 99 10 4 chr12 102491490 102492477 -18765053 + L1Md_F2 LINE L1 5590 6582 -3 8 1366 211 167 37 0 chr12 102492490 102492544 -18764986 + A-rich Low_complexity Low_complexity 2 57 0 8 1366 3258 122 32 21 chr12 102492546 102493174 -18764356 + MusHAL1 LINE L1 692 1326 -1386 8 1366 7104 77 5 0 chr12 102493192 102494332 -18763198 - L1_Mus1 LINE L1 0 6567 5425 8 1366 4214 125 24 5 chr12 102494331 102495085 -18762445 + MusHAL1 LINE L1 1313 2080 -632 8 1366 587 294 0 46 chr12 102495309 102495462 -18762068 - B1_Mur1 SINE Alu -2 147 2 8 1366 420 20 0 0 chr12 102495559 102495608 -18761922 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1366 233 320 81 59 chr12 102495726 102495862 -18761668 - LTR85a LTR Gypsy? -146 556 418 8 1366 2147 37 4 0 chr12 102495966 102496236 -18761294 + L1Md_F2 LINE L1 5316 5586 -297 8 1366 8143 46 0 3 chr12 102496236 102497225 -18760305 + L1Md_F2 LINE L1 5587 6572 -10 8 1366 919 215 8 117 chr12 102497348 102497596 -18759934 + MT2A LTR ERVL 3 223 -310 8 170 2397 287 65 35 chr12 102497657 102498517 -18759013 - RMER13A LTR ERVK -42 866 1 8 1367 367 245 51 216 chr12 102498517 102498771 -18758759 + MT2A LTR ERVL 390 601 0 8 1367 1524 232 62 21 chr12 102498823 102499259 -18758271 + MERVL_2A-int LTR ERVL 30 483 -5278 8 1367 2375 183 43 2 chr12 102499254 102499741 -18757789 + MERVL_2A-int LTR ERVL 2225 2731 -3030 8 1367 1710 88 0 0 chr12 102499742 102499991 -18757539 + L1_Mm LINE L1 4944 5192 -691 8 1367 2901 70 0 0 chr12 102500000 102500371 -18757159 + L1Md_F2 LINE L1 5216 5586 -297 1 1367 7284 82 8 5 chr12 102500371 102501352 -18756178 + L1Md_F2 LINE L1 5587 6570 -12 1 1367 9268 175 15 11 chr12 102501355 102502989 -18754541 + MERVL_2A-int LTR ERVL 2721 4360 -1401 2 1367 4185 190 39 21 chr12 102503496 102504258 -18753272 + RMER12 LTR ERVK 1 768 -554 3 1367 273 119 0 0 chr12 102504258 102504300 -18753230 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 4 1367 4185 249 75 15 chr12 102504300 102504676 -18752854 + RMER12 LTR ERVK 769 1205 -117 3 1367 326 266 71 16 chr12 102505018 102505144 -18752386 + L1MA5 LINE L1 6166 6298 -2 5 1367 2193 48 10 20 chr12 102505514 102505812 -18751718 + L1Md_F3 LINE L1 6289 6583 -1 6 1367 354 200 15 0 chr12 102506227 102506292 -18751238 + ID4_ SINE ID 7 72 -11 7 1367 360 0 0 0 chr12 102506700 102506740 -18750790 + (TAA)n Simple_repeat Simple_repeat 1 40 0 8 1367 294 282 16 16 chr12 102506874 102507000 -18750530 - L1MB7 LINE L1 -9 6175 6050 9 1367 1496 187 34 79 chr12 102507021 102507186 -18750344 + RLTR12B LTR ERVK 1 144 -384 1 1367 1831 140 24 42 chr12 102507186 102507521 -18750009 - ORR1A4 LTR MaLR 0 329 1 1 1367 1496 187 34 79 chr12 102507521 102507709 -18749821 + RLTR12B LTR ERVK 145 338 -190 1 1367 469 272 24 37 chr12 102507811 102507975 -18749555 - MER3 DNA MER1_type -4 205 44 1 1367 834 192 80 0 chr12 102508196 102508383 -18749147 + RLTR12B LTR ERVK 307 508 -20 1 1367 2098 221 45 21 chr12 102508383 102508896 -18748634 - RLTR11A2 LTR ERVK 0 527 3 1 1367 5917 230 79 88 chr12 102508904 102511309 -18746221 - MYSERV16_I-int LTR ERVK -1794 4756 6 1 1367 417 283 16 32 chr12 102511436 102511560 -18745970 - B1_Mur3 SINE Alu -6 143 22 1 1367 513 223 16 62 chr12 102511671 102511800 -18745730 - B1_Mur3 SINE Alu -6 143 21 1 1367 1124 238 94 31 chr12 102512553 102512839 -18744691 - RLTR11A2 LTR ERVK -209 318 15 1 1367 1213 196 18 0 chr12 102512839 102513059 -18744471 + RLTR11A2 LTR ERVK 303 526 -1 1 1367 414 134 0 0 chr12 102513250 102513317 -18744213 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 1 1367 530 268 78 8 chr12 102513322 102513450 -18744080 + MTD LTR MaLR 149 285 -134 1 1367 434 149 0 0 chr12 102513467 102513541 -18743989 - Lx2 LINE L1 -597 6400 6327 2 1367 1184 202 101 40 chr12 102513837 102514370 -18743160 + MYSERV6-int LTR ERVK 7813 8241 -718 2 1367 7392 83 0 0 chr12 102514418 102515533 -18741997 - L1_Mus2 LINE L1 0 6566 5452 2 1367 3171 60 0 0 chr12 102515533 102515932 -18741598 - L1Md_T LINE L1 -1 6581 6183 2 1367 3275 73 0 0 chr12 102515932 102516371 -18741159 - L1_Mus2 LINE L1 -1532 4351 3913 2 1367 893 208 10 0 chr12 102516373 102516565 -18740965 - L1Md_F LINE L1 -5698 821 628 2 1367 459 242 24 16 chr12 102516573 102516699 -18740831 - L1Md_F LINE L1 -5813 706 580 2 1367 471 299 46 41 chr12 102516723 102516982 -18740548 - L1VL1 LINE L1 -5941 477 43 2 1367 2246 190 62 8 chr12 102516984 102517467 -18740063 + MYSERV6-int LTR ERVK 8238 8746 -213 2 1367 286 189 396 0 chr12 102517581 102517687 -18739843 + MYSERV6-int LTR ERVK 8808 8955 -4 2 1367 2382 194 33 12 chr12 102517691 102518208 -18739322 + RLTR12B LTR ERVK 1 528 0 2 1367 180 0 0 0 chr12 102518447 102518467 -18739063 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1367 1258 70 6 0 chr12 102518839 102519010 -18738520 - L1_Mus1 LINE L1 0 6567 6396 2 1367 984 44 154 0 chr12 102519010 102519146 -18738384 + L1_Mus1 LINE L1 5782 5938 -629 2 1367 225 250 19 0 chr12 102520723 102520775 -18736755 + Lx8 LINE L1 6911 6963 -510 2 1367 476 240 19 0 chr12 102520812 102520916 -18736614 - PB1D9 SINE Alu -9 111 6 3 1367 265 264 109 36 chr12 102520825 102520935 -18736595 - ID_B1 SINE B4 -48 176 59 3 1367 522 250 0 43 chr12 102522498 102522615 -18734915 + PB1D7 SINE Alu 7 118 -2 3 1367 259 296 169 40 chr12 102522615 102522646 -18734884 + B4 SINE B4 92 258 -34 3 1367 244 284 0 0 chr12 102522946 102523027 -18734503 + T-rich Low_complexity Low_complexity 1 81 0 3 1367 1540 274 67 58 chr12 102523027 102523573 -18733957 + L1_Rod LINE L1 3802 4343 -1504 3 1367 312 27 0 0 chr12 102523573 102523610 -18733920 + (TAAAA)n Simple_repeat Simple_repeat 1 37 0 3 1367 1540 274 67 58 chr12 102523610 102523879 -18733651 + L1_Rod LINE L1 4344 4624 -1223 3 1367 7146 95 12 70 chr12 102523977 102525194 -18732336 - L1VL2 LINE L1 -1586 2029 831 3 1367 276 233 32 75 chr12 102525194 102525205 -18732325 - B4A SINE B4 -203 89 1 3 1367 573 110 0 0 chr12 102525205 102525287 -18732243 - B2_Mm2 SINE B2 -113 82 1 3 1367 7146 95 12 70 chr12 102525287 102526036 -18731494 - L1VL2 LINE L1 -1586 830 91 3 1367 459 292 13 52 chr12 102526337 102526429 -18731101 - B1F SINE Alu 0 149 59 4 1367 2132 202 22 32 chr12 102526429 102526935 -18730595 - RLTR16 LTR ERVK 0 505 5 4 1367 459 292 13 52 chr12 102526935 102526997 -18730533 - B1F SINE Alu -91 58 1 4 1367 722 299 6 11 chr12 102527237 102527416 -18730114 + B4A SINE B4 1 178 -114 4 1367 711 112 0 0 chr12 102527426 102527533 -18729997 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 4 1367 1173 29 0 0 chr12 102527557 102527694 -18729836 - L1Md_F2 LINE L1 -567 6015 5879 4 1367 4199 70 7 9 chr12 102527694 102528253 -18729277 + L1Md_F2 LINE L1 6012 6569 -13 4 1367 566 135 32 63 chr12 102529439 102529597 -18727933 - Lx9 LINE L1 -15 7629 7477 4 1367 414 57 0 0 chr12 102529600 102529653 -18727877 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1367 3320 245 59 27 chr12 102529654 102530643 -18726887 - Lx9 LINE L1 -127 7517 6498 4 1367 1599 201 30 8 chr12 102530643 102531005 -18726525 - RMER6C LTR ERVK 0 690 321 4 1367 895 269 68 18 chr12 102531012 102531292 -18726238 - Lx2B LINE L1 -2 6974 6681 4 1367 1651 225 20 2 chr12 102531259 102531694 -18725836 - Lx2B LINE L1 -503 6473 6022 4 1367 1710 176 6 16 chr12 102531692 102532056 -18725474 - L1_Mur2 LINE L1 -1824 4053 3694 5 1367 5949 108 10 38 chr12 102532067 102533034 -18724496 - L1_Mus1 LINE L1 0 6567 5592 5 1367 365 167 0 0 chr12 102533026 102533092 -18724438 - L1_Mur3 LINE L1 -460 5420 5355 5 1367 7704 125 40 8 chr12 102533114 102534983 -18722547 - L1_Mus3 LINE L1 -7 6631 4693 5 1367 1817 158 6 12 chr12 102534983 102535309 -18722221 + ORR1A3 LTR MaLR 3 326 0 5 1367 5914 171 82 17 chr12 102535309 102535518 -18722012 - L1_Mus3 LINE L1 -1191 4692 4463 5 1367 3989 217 14 35 chr12 102535527 102537379 -18720151 - Lx5 LINE L1 -131 6927 5146 5 1367 973 251 42 45 chr12 102537379 102537688 -18719842 - RMER6D LTR ERVK -101 619 312 5 1367 332 189 14 0 chr12 102537688 102537762 -18719768 + CT-rich Low_complexity Low_complexity 2 76 0 5 1367 180 0 0 0 chr12 102538060 102538080 -18719450 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1367 1201 35 0 0 chr12 102538081 102538222 -18719308 - B1_Mm SINE Alu -6 141 1 5 1367 749 253 44 35 chr12 102538264 102538493 -18719037 + Lx8 LINE L1 6233 6463 -1010 6 1367 214 203 14 42 chr12 102539153 102539225 -18718305 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 6 1367 378 353 71 32 chr12 102539269 102539424 -18718106 - B3A SINE B2 -24 174 14 6 1367 222 35 0 0 chr12 102539771 102539784 -18717746 + (TA)n Simple_repeat Simple_repeat 2 14 0 6 1367 441 0 0 0 chr12 102539784 102539833 -18717697 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1367 222 35 0 0 chr12 102539833 102539848 -18717682 + (TA)n Simple_repeat Simple_repeat 1 15 0 6 1367 561 385 17 0 chr12 102539995 102540169 -18717361 + B3 SINE B2 5 181 -35 6 1367 580 234 14 7 chr12 102540169 102540307 -18717223 + MTD LTR MaLR 1 139 -280 6 1367 415 267 68 8 chr12 102540323 102540455 -18717075 + MTD LTR MaLR 241 380 -39 6 1367 289 354 47 7 chr12 102540930 102541078 -18716452 - MIR SINE MIR -101 161 8 6 1367 226 121 0 0 chr12 102542405 102542438 -18715092 - L1MD LINE L1 -1910 4236 4204 6 1367 551 328 98 34 chr12 102542641 102542846 -18714684 + B4A SINE B4 6 224 -68 7 1367 14890 96 50 4 chr12 102543293 102546290 -18711240 - L1_Mus1 LINE L1 -3 6564 3412 7 1367 2090 128 29 43 chr12 102546406 102546782 -18710748 - Lx3_Mus LINE L1 0 7009 6639 7 1367 315 0 0 0 chr12 102546990 102547025 -18710505 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1367 180 0 0 0 chr12 102548008 102548028 -18709502 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1367 261 0 0 0 chr12 102548028 102548056 -18709474 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1367 540 0 0 0 chr12 102548125 102548185 -18709345 + (ATGTG)n Simple_repeat Simple_repeat 1 60 0 7 1367 215 163 20 20 chr12 102548318 102548368 -18709162 + GA-rich Low_complexity Low_complexity 1 50 0 7 1367 2308 95 0 3 chr12 102548502 102548818 -18708712 - Lx3_Mus LINE L1 -364 6645 6331 7 1367 238 26 25 25 chr12 102548818 102548858 -18708672 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1367 318 285 81 62 chr12 102548863 102549024 -18708506 - L1M5 LINE L1 -2348 3798 3635 7 1367 668 304 39 68 chr12 102549255 102549566 -18707964 - Lx8 LINE L1 -294 7179 6878 8 1367 258 32 0 0 chr12 102549601 102549632 -18707898 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1367 298 228 70 0 chr12 102549634 102549691 -18707839 - MTD LTR MaLR -232 187 127 8 1367 3843 140 56 48 chr12 102549692 102550737 -18706793 + RLTR13D1 LTR ERVK 1 1023 0 8 1367 247 232 0 35 chr12 102550778 102550836 -18706694 - MTD LTR MaLR -365 56 1 8 1367 363 323 0 0 chr12 102550878 102550974 -18706556 + B3 SINE B2 110 205 -11 8 1367 370 313 38 45 chr12 102551651 102551808 -18705722 + RSINE1 SINE B4 4 159 -6 8 1367 396 267 0 72 chr12 102552830 102552955 -18704575 - PB1D10 SINE Alu 0 117 2 8 1367 485 251 183 21 chr12 102552956 102553196 -18704334 - L1MC1 LINE L1 -204 6129 5851 8 1367 1040 248 94 38 chr12 102553202 102553596 -18703934 + Lx9 LINE L1 7229 7644 0 8 1367 239 244 98 0 chr12 102553605 102553687 -18703843 - L1MC1 LINE L1 -486 5847 5758 8 1367 526 257 91 0 chr12 102553698 102553873 -18703657 - B3 SINE B2 0 198 1 8 1367 581 270 202 9 chr12 102553876 102554212 -18703318 - L1MC1 LINE L1 -567 5766 5366 8 1367 582 157 0 0 chr12 102554236 102554357 -18703173 + CT-rich Low_complexity Low_complexity 1 121 0 9 1367 436 253 107 5 chr12 102554417 102554604 -18702926 + RMER10A LTR ERVL 236 441 -1 9 1367 238 340 0 0 chr12 102554768 102554821 -18702709 + ID SINE ID 29 81 -143 9 1367 252 149 0 0 chr12 102554822 102554869 -18702661 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 9 1367 530 198 5 38 chr12 102555394 102555578 -18701952 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 9 1367 412 316 7 50 chr12 102555937 102556077 -18701453 + B1_Mur1 SINE Alu 2 135 -14 9 1367 4636 137 16 20 chr12 102556077 102556758 -18700772 + RLTR22_Mur LTR ERVK 5 690 -1158 9 1367 218 32 0 31 chr12 102556758 102556790 -18700740 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 1367 1146 70 0 0 chr12 102556791 102556934 -18700596 - B1_Mus1 SINE Alu -4 144 2 9 1367 4613 137 16 20 chr12 102556934 102557049 -18700481 + RLTR22_Mur LTR ERVK 691 800 -1048 9 1367 332 333 62 52 chr12 102557288 102557481 -18700049 + RMER12 LTR ERVK 1128 1322 0 9 1367 688 169 108 0 chr12 102557563 102557693 -18699837 + B1_Mus1 SINE Alu 5 148 0 1 1367 1138 91 11 33 chr12 102557695 102557876 -18699654 + L1_Mus3 LINE L1 6459 6635 -3 1 1367 692 301 29 6 chr12 102557965 102558139 -18699391 + B3A SINE B2 1 178 -20 1 1367 225 333 102 17 chr12 102558171 102558348 -18699182 - L2 LINE L2 -529 2890 2699 1 1367 570 86 0 0 chr12 102558418 102558499 -18699031 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1367 316 300 11 43 chr12 102558518 102558612 -18698918 + PB1D10 SINE Alu 11 101 -16 1 1367 419 253 7 0 chr12 102558705 102558859 -18698671 + CT-rich Low_complexity Low_complexity 1 155 0 1 1367 377 230 5 118 chr12 102558859 102559046 -18698484 - Lx4B LINE L1 -2 7056 6891 1 1367 20759 124 11 52 chr12 102559047 102563099 -18694431 - L1_Mur1 LINE L1 -843 5043 1158 1 1367 25833 88 96 2 chr12 102563106 102564244 -18693286 - L1_Mus3 LINE L1 0 6638 5410 1 1367 1193 48 7 0 chr12 102564244 102564391 -18693139 - B1_Mus1 SINE Alu 0 148 1 1 1367 25833 133 8 9 chr12 102564391 102568400 -18689130 - L1_Mus3 LINE L1 -474 5409 1387 1 1367 1094 232 119 71 chr12 102568375 102568871 -18688659 - L1_Mur1 LINE L1 -6020 964 445 1 1367 1086 51 0 0 chr12 102568926 102569063 -18688467 + (TC)n Simple_repeat Simple_repeat 1 137 0 1 1367 642 320 67 0 chr12 102569158 102569336 -18688194 + B3 SINE B2 2 191 -25 1 1367 228 258 0 31 chr12 102569400 102569464 -18688066 + GA-rich Low_complexity Low_complexity 5 66 0 1 1367 189 0 0 0 chr12 102569477 102569498 -18688032 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1367 417 206 0 0 chr12 102569599 102569672 -18687858 - B3A SINE B2 -122 76 4 1 1367 6060 96 40 0 chr12 102570267 102571190 -18686340 - L1_Mus3 LINE L1 -6 6632 5673 1 1367 29137 71 6 7 chr12 102571205 102572138 -18685392 - L1_Mus1 LINE L1 0 6567 5633 1 1367 1803 105 27 66 chr12 102572138 102572473 -18685057 + RLTRETN_Mm LTR ERVK 1 322 0 1 1367 29137 109 7 8 chr12 102572473 102574644 -18682886 - L1_Mus1 LINE L1 -251 5632 3467 1 1367 3603 49 0 7 chr12 102574644 102575094 -18682436 - L1Md_F2 LINE L1 -4 6578 6132 1 1367 29137 124 22 7 chr12 102575094 102578128 -18679402 - L1_Mus1 LINE L1 -2417 3466 380 1 1367 606 110 0 32 chr12 102578374 102578468 -18679062 + B1_Mur4 SINE Alu 60 150 0 1 1367 4944 83 7 1 chr12 102578589 102579266 -18678264 - L1_Mus1 LINE L1 -2 6565 5885 1 1367 1437 116 0 225 chr12 102579266 102579561 -18677969 - L1_Mm LINE L1 -1065 4818 4600 1 1367 209 0 47 47 chr12 102579561 102579604 -18677926 + (TTTTG)n Simple_repeat Simple_repeat 4 46 0 1 1367 1059 101 0 0 chr12 102579605 102579744 -18677786 - B1_Mus2 SINE Alu -8 139 1 1 1367 1437 116 0 225 chr12 102579744 102579868 -18677662 - L1_Mm LINE L1 -1284 4599 4492 1 1367 637 262 63 19 chr12 102579926 102580132 -18677398 - B3 SINE B2 0 216 2 1 1367 345 293 85 57 chr12 102580223 102580364 -18677166 + RSINE1 SINE B4 4 148 -17 1 1367 627 103 0 0 chr12 102580389 102580486 -18677044 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 1367 398 269 118 0 chr12 102580971 102581090 -18676440 - ETnERV2-int LTR ERVK -204 7202 7070 1 1367 483 60 0 0 chr12 102581652 102581719 -18675811 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1367 821 212 88 0 chr12 102581949 102582119 -18675411 + MTE2b LTR MaLR 195 379 0 1 1367 8151 25 1 0 chr12 102583494 102584788 -18672742 - L1Md_T LINE L1 0 6582 5288 1 1367 7020 38 1 0 chr12 102584782 102585662 -18671868 - L1Md_T LINE L1 -1 6584 5704 1 1367 30926 47 1 5 chr12 102585662 102590610 -18666920 - L1Md_T LINE L1 -591 5295 268 1 1367 221 179 26 0 chr12 102591494 102591533 -18665997 + B3A SINE B2 40 79 -119 1 1367 423 0 0 0 chr12 102591978 102592025 -18665505 + (TTA)n Simple_repeat Simple_repeat 1 47 0 1 1367 228 375 0 93 chr12 102592160 102592174 -18665356 + MT2B LTR ERVL 153 157 -444 1 1367 616 290 14 0 chr12 102592174 102592319 -18665211 + B1_Mur1 SINE Alu 3 149 0 1 1367 22 0 0 0 chr12 102592549 102592571 -18664959 + AT_rich Low_complexity Low_complexity 1 22 0 1 1367 389 333 6 169 chr12 102592638 102592815 -18664715 + MTE2a LTR MaLR 3 150 -229 1 1367 506 247 181 12 chr12 102592881 102593041 -18664489 - B3 SINE B2 -28 188 2 1 1367 435 326 40 6 chr12 102593041 102593184 -18664346 + MTE2a LTR MaLR 201 346 -33 1 1367 207 0 0 0 chr12 102593184 102593207 -18664323 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1367 435 326 40 6 chr12 102593207 102593236 -18664294 + MTE2a LTR MaLR 347 378 -1 1 1367 413 104 250 19 chr12 102593822 102593930 -18663600 + L1Md_F2 LINE L1 6450 6582 0 1 1367 582 277 19 39 chr12 102594099 102594253 -18663277 + ID_B1 SINE B4 12 162 -62 1 1367 500 0 17 0 chr12 102594259 102594319 -18663211 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1367 415 333 61 30 chr12 102595360 102595623 -18661907 - B4A SINE B4 -18 274 4 1 1367 228 70 68 34 chr12 102595640 102595699 -18661831 + T-rich Low_complexity Low_complexity 2 62 0 1 1367 30 69 0 0 chr12 102595935 102595993 -18661537 + AT_rich Low_complexity Low_complexity 1 58 0 1 1367 329 340 69 0 chr12 102597184 102597328 -18660202 + RSINE1 SINE B4 12 165 0 1 1367 194 219 16 0 chr12 102597328 102597392 -18660138 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1367 210 296 114 0 chr12 102598822 102598910 -18658620 + L2b LINE L2 2952 3049 -326 1 1367 358 223 45 13 chr12 102599792 102599902 -18657628 + B3 SINE B2 34 150 -48 1 1367 22 0 0 0 chr12 102600178 102600200 -18657330 + AT_rich Low_complexity Low_complexity 1 22 0 1 1367 4406 140 104 8 chr12 102600228 102601071 -18656459 - Lx2 LINE L1 -35 6962 6039 1 1367 2682 154 4 45 chr12 102601072 102601601 -18655929 - L1VL4 LINE L1 -5513 789 283 1 1367 587 276 97 50 chr12 102601587 102601926 -18655604 + L1MA4 LINE L1 5615 5969 -331 1 1367 377 229 213 28 chr12 102602759 102602867 -18654663 + B3A SINE B2 2 129 -69 1 1367 585 297 7 0 chr12 102603114 102603252 -18654278 + ID_B1 SINE B4 86 224 0 1 1367 561 125 0 0 chr12 102603447 102603535 -18653995 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1367 364 283 0 23 chr12 102603548 102603641 -18653889 + ID4_ SINE ID 8 99 -53 1 1367 295 274 0 27 chr12 102604314 102604389 -18653141 + ID4_ SINE ID 2 74 -9 1 1367 974 230 19 28 chr12 102604393 102604608 -18652922 - B3 SINE B2 -2 214 2 1 1367 553 111 11 0 chr12 102605131 102605221 -18652309 - L1_Mm LINE L1 -629 5254 5164 1 1367 6110 72 2 2 chr12 102605221 102606024 -18651506 - L1Md_F2 LINE L1 -7 6575 5773 1 1367 2308 104 182 0 chr12 102606024 102606426 -18651104 - IAPLTR2a LTR ERVK 0 475 1 1 1367 5835 39 5 12 chr12 102606426 102607177 -18650353 - IAPEz-int LTR ERVK 0 6481 5736 1 1367 2122 65 0 0 chr12 102607176 102607454 -18650076 - IAPEz-int LTR ERVK -4845 1636 1359 1 1367 3364 63 4 40 chr12 102607454 102608199 -18649331 - IAPEz-int LTR ERVK -5819 662 22 1 1367 2356 88 92 16 chr12 102608233 102608615 -18648915 - IAPLTR2a LTR ERVK 0 411 1 1 1367 573 14 14 0 chr12 102608615 102608685 -18648845 - IAPEz-int LTR ERVK 0 6481 6411 1 1367 894 113 0 0 chr12 102608685 102608827 -18648703 - L1_Mm LINE L1 -1530 4353 4212 1 1367 6768 88 15 7 chr12 102608813 102610114 -18647416 + L1_Mus1 LINE L1 5257 6567 0 1 1367 24 0 0 0 chr12 102611111 102611135 -18646395 + AT_rich Low_complexity Low_complexity 1 24 0 1 1367 284 208 40 27 chr12 102611502 102611576 -18645954 - Lx4A LINE L1 -456 6602 6528 1 1367 7758 204 16 76 chr12 102612031 102612861 -18644669 + L1_Mur3 LINE L1 2764 3559 -2321 1 1367 1182 61 0 0 chr12 102612861 102613008 -18644522 + B1_Mus1 SINE Alu 2 148 0 1 1367 7758 204 16 76 chr12 102613008 102614287 -18643243 + L1_Mur3 LINE L1 3560 4747 -1133 1 1367 243 257 28 14 chr12 102614265 102614336 -18643194 - Lx3C LINE L1 -474 6502 6431 1 1367 2124 218 16 49 chr12 102614340 102614852 -18642678 + Lx2B LINE L1 6501 6995 -5 1 1367 4016 39 0 0 chr12 102614861 102615406 -18642124 - L1Md_F2 LINE L1 -519 6063 5519 1 1367 3830 63 39 8 chr12 102615407 102615921 -18641609 + L1Md_F2 LINE L1 6053 6582 0 1 1367 2151 140 172 0 chr12 102615924 102616324 -18641206 + L1_Mur3 LINE L1 4731 5199 -678 1 1367 2425 174 50 0 chr12 102616345 102616787 -18640743 - Lx5 LINE L1 -421 6629 6166 1 1367 437 272 80 30 chr12 102617765 102618078 -18639452 - ORR1D2 LTR MaLR 0 370 9 1 1367 720 295 134 53 chr12 102618330 102618724 -18638806 + MER88 LTR ERVL 3 428 -36 1 1367 291 216 80 0 chr12 102618789 102618877 -18638653 + MER34A LTR ERV1 7 101 -470 1 1367 1192 242 132 9 chr12 102618879 102619204 -18638326 + ORR1D2 LTR MaLR 6 370 0 1 1367 491 317 83 26 chr12 102619204 102619433 -18638097 + MER34A LTR ERV1 97 338 -233 1 1367 2582 50 35 3 chr12 102619459 102619798 -18637732 - L1Md_F2 LINE L1 -1 6581 6232 1 1367 243 267 73 62 chr12 102619802 102619898 -18637632 + MER34A LTR ERV1 427 523 -48 1 1367 3259 34 3 0 chr12 102619946 102620333 -18637197 - L1_Mm LINE L1 -314 5569 5182 1 1367 191 391 56 0 chr12 102620334 102620495 -18637035 - L2 LINE L2 -613 2806 2637 1 1367 18700 91 27 16 chr12 102620675 102624552 -18632978 - Lx3_Mus LINE L1 -5 7004 3080 1 1367 6167 72 7 5 chr12 102624561 102625372 -18632158 - L1_Mus1 LINE L1 0 6567 5755 1 1367 31 82 0 0 chr12 102625413 102625486 -18632044 + AT_rich Low_complexity Low_complexity 1 73 0 1 1367 6965 132 21 10 chr12 102626215 102627315 -18630215 + Lx2 LINE L1 5886 6997 0 1 1367 414 308 49 36 chr12 102627332 102627719 -18629811 + L1M2 LINE L1 3144 3535 -2605 1 1367 573 15 0 0 chr12 102627827 102627893 -18629637 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 170 8225 167 29 4 chr12 102627938 102629477 -18628053 + Lx4B LINE L1 5473 7054 -4 1 1368 2113 308 79 30 chr12 102629474 102630530 -18627000 + L1M2 LINE L1 3773 4898 -1245 1 1368 512 276 7 14 chr12 102630530 102630677 -18626853 + B1_Mm SINE Alu 1 146 -1 1 1368 2113 308 79 30 chr12 102630677 102630873 -18626657 + L1M2 LINE L1 4899 5087 -1056 1 1368 292 280 86 0 chr12 102630959 102631052 -18626478 - B3A SINE B2 -95 103 3 1 1368 296 209 112 9 chr12 102631083 102631199 -18626331 + L1M2 LINE L1 5106 5233 -910 1 1368 7241 118 111 1 chr12 102631212 102632686 -18624844 - L1_Mus3 LINE L1 0 6638 4731 1 1368 384 22 0 0 chr12 102632686 102632731 -18624799 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1368 5469 138 352 1 chr12 102632731 102633265 -18624265 - L1_Mus3 LINE L1 -1153 4730 4188 1 1368 4158 88 2 5 chr12 102633266 102633834 -18623696 + L1_Mus2 LINE L1 5983 6548 -18 1 1368 4561 145 16 18 chr12 102633834 102634905 -18622625 + L1Md_A LINE L1 422 1488 -4395 1 1368 1683 157 6 6 chr12 102634904 102635218 -18622312 - L1_Mus3 LINE L1 -5708 1016 703 1 1368 2281 62 3 13 chr12 102635216 102635528 -18622002 - L1Md_F3 LINE L1 -949 4934 4626 1 1368 8278 51 1 0 chr12 102635527 102637140 -18620390 + L1Md_F3 LINE L1 4950 6564 -20 1 1368 1339 204 7 18 chr12 102637158 102637442 -18620088 - L1VL1 LINE L1 -6141 281 1 1 1368 401 125 0 0 chr12 102637440 102637504 -18620026 - Lx3_Mus LINE L1 -1211 5798 5735 1 1368 677 199 61 0 chr12 102637593 102637724 -18619806 - B1_Mur2 SINE Alu -6 143 5 1 1368 25 51 0 0 chr12 102637731 102637770 -18619760 + AT_rich Low_complexity Low_complexity 1 39 0 1 1368 1030 265 84 43 chr12 102638228 102638737 -18618793 - L1_Mur3 LINE L1 -359 5521 4992 1 1368 48 53 0 0 chr12 102638889 102638965 -18618565 + AT_rich Low_complexity Low_complexity 1 76 0 1 1368 731 229 0 0 chr12 102639187 102639327 -18618203 - B1_Mur2 SINE Alu -8 141 2 2 1368 393 22 0 0 chr12 102639390 102639436 -18618094 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1368 241 341 58 58 chr12 102640189 102640363 -18617167 + MER5A DNA MER1_type 1 174 -15 2 1368 240 206 27 93 chr12 102640519 102640594 -18616936 + RLTR20D LTR ERVK 66 135 -433 2 1368 485 265 0 57 chr12 102641022 102641146 -18616384 - PB1D10 SINE Alu 0 117 1 2 1368 22 0 0 0 chr12 102641729 102641751 -18615779 + AT_rich Low_complexity Low_complexity 1 22 0 2 1368 246 186 50 17 chr12 102641972 102642032 -18615498 + B4A SINE B4 159 220 -72 2 1368 1064 210 166 49 chr12 102644153 102644479 -18613051 - ORR1D2 LTR MaLR -4 366 3 2 1368 373 283 27 27 chr12 102645078 102645227 -18612303 - Lx7 LINE L1 -4 7692 7544 2 1368 267 31 0 0 chr12 102645315 102645347 -18612183 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1368 2316 249 61 26 chr12 102645347 102645973 -18611557 - Lx7 LINE L1 -357 7339 6692 2 1368 801 224 103 6 chr12 102646033 102646208 -18611322 - Lx7 LINE L1 -1148 6548 6357 2 1368 466 252 78 16 chr12 102646235 102646364 -18611166 + B1_Mur1 SINE Alu 7 143 -6 2 1368 571 274 41 51 chr12 102646511 102646707 -18610823 - LTR40b LTR ERVL 0 462 269 2 1368 541 295 84 39 chr12 102646709 102647053 -18610477 - MLT1C LTR MaLR -8 459 26 2 1368 323 322 193 18 chr12 102647055 102647273 -18610257 - LTR40b LTR ERVL -205 260 5 2 1368 1291 99 16 0 chr12 102648076 102648258 -18609272 - B2_Mm2 SINE B2 -8 187 3 2 1368 557 305 94 38 chr12 102649050 102649391 -18608139 - MER34A LTR ERV1 -25 546 187 2 1368 312 194 81 0 chr12 102649403 102649465 -18608065 - MER34A LTR ERV1 -504 67 1 2 1368 269 421 13 0 chr12 102649506 102649658 -18607872 - Charlie7 DNA MER1_type -1186 1426 1273 2 1368 346 304 21 28 chr12 102649731 102649873 -18607657 + B1F1 SINE Alu 1 141 -8 2 1368 348 311 58 0 chr12 102650323 102650426 -18607104 - PB1D7 SINE Alu -11 109 1 2 1368 385 319 0 0 chr12 102650338 102650429 -18607101 - ID_B1 SINE B4 -55 169 79 2 1368 1473 187 4 11 chr12 102651112 102651388 -18606142 - Lx4B LINE L1 -319 6739 6466 2 1368 6741 153 22 12 chr12 102651382 102653142 -18604388 + L1VL2 LINE L1 278 2146 -1469 2 1368 1337 130 54 0 chr12 102653772 102653995 -18603535 - L1_Mur2 LINE L1 -312 5565 5331 2 1368 561 309 99 16 chr12 102654142 102654517 -18603013 - L1M4 LINE L1 -1344 4802 4397 2 1368 262 278 48 15 chr12 102654577 102654770 -18602760 - L1M4b LINE L1 -4732 2276 2081 2 1368 246 246 23 85 chr12 102655603 102655732 -18601798 - L1M4b LINE L1 -5451 1545 1425 2 1368 248 300 29 20 chr12 102656040 102656142 -18601388 - L1MC LINE L1 -2160 5722 5620 2 1368 26 0 0 0 chr12 102656192 102656218 -18601312 + AT_rich Low_complexity Low_complexity 1 26 0 2 1368 651 328 37 28 chr12 102656447 102656770 -18600760 - RMER15 LTR ERVL 0 575 250 2 1368 207 0 0 0 chr12 102656912 102656935 -18600595 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1368 3987 216 44 25 chr12 102657007 102657893 -18599637 - Lx5 LINE L1 -2 7048 6146 2 1368 292 177 125 12 chr12 102657953 102658033 -18599497 - MER53 DNA hAT -79 114 26 2 1368 1904 189 19 46 chr12 102658084 102658499 -18599031 + MTC LTR MaLR 18 421 0 2 1368 490 318 68 41 chr12 102658898 102659265 -18598265 - Lx9 LINE L1 -27 7617 7241 2 1368 3196 112 42 13 chr12 102659272 102659796 -18597734 - L1VL4 LINE L1 -5362 940 402 2 1368 420 181 43 0 chr12 102659796 102659888 -18597642 - B3A SINE B2 -110 106 2 2 1368 1453 75 9 18 chr12 102659912 102660141 -18597389 - L1_Mus3 LINE L1 -1 6637 6411 2 1368 710 169 10 104 chr12 102660275 102660467 -18597063 - RLTR26 LTR ERVK 0 642 469 2 1368 216 0 0 0 chr12 102660508 102660532 -18596998 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1368 728 42 10 0 chr12 102660545 102660641 -18596889 + (GA)n Simple_repeat Simple_repeat 1 97 0 2 1368 924 208 98 134 chr12 102660662 102660967 -18596563 - MT2A LTR ERVL -231 302 9 2 1368 1366 327 73 20 chr12 102661098 102661848 -18595682 - Lx8 LINE L1 -644 7052 6246 2 1368 200 167 21 0 chr12 102661919 102661967 -18595563 + CT-rich Low_complexity Low_complexity 6 54 0 2 1368 820 325 17 35 chr12 102661996 102662286 -18595244 - B4A SINE B4 -2 290 6 2 1368 357 314 125 32 chr12 102662294 102662474 -18595056 - L1MCa LINE L1 -1351 4970 4773 2 1368 218 75 50 0 chr12 102662474 102662514 -18595016 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 2 1368 357 312 122 33 chr12 102662514 102662616 -18594914 - L1MCa LINE L1 -1543 4778 4660 2 1368 304 328 116 19 chr12 102662753 102663064 -18594466 - L1MCa LINE L1 -4080 2428 2088 2 1368 1260 279 87 54 chr12 102663138 102663463 -18594067 - L1MA6 LINE L1 -246 6054 5743 2 1368 1232 47 0 0 chr12 102663463 102663611 -18593919 - B1_Mus1 SINE Alu 0 148 1 2 1368 1260 279 87 54 chr12 102663611 102663973 -18593557 - L1MA6 LINE L1 -558 5742 5344 2 1368 25 0 0 0 chr12 102663973 102663998 -18593532 + AT_rich Low_complexity Low_complexity 1 25 0 2 1368 2981 183 42 12 chr12 102663998 102664567 -18592963 - Lx4B LINE L1 -8 7050 6465 2 1368 1296 104 5 5 chr12 102664576 102664770 -18592760 - L1_Mur2 LINE L1 -951 4926 4733 2 1368 5521 179 139 14 chr12 102664764 102666110 -18591420 - L1VL4 LINE L1 -2888 2998 1485 2 1368 39152 8 0 6 chr12 102666122 102672329 -18585201 - L1Md_A LINE L1 -1 6581 416 2 1368 1342 202 62 8 chr12 102672328 102672637 -18584893 - L1VL4 LINE L1 -4375 1502 1181 2 1368 5290 35 13 0 chr12 102672637 102673270 -18584260 - L1Md_F2 LINE L1 -2 6580 5940 2 1368 1342 238 40 57 chr12 102673270 102673596 -18583934 - L1VL4 LINE L1 -5477 1180 876 2 1368 190 246 59 44 chr12 102673826 102673894 -18583636 + L2 LINE L2 1089 1157 -2262 2 1368 27 49 0 0 chr12 102673913 102673954 -18583576 + AT_rich Low_complexity Low_complexity 1 41 0 2 1368 582 247 50 6 chr12 102673957 102674136 -18583394 - Lx4A LINE L1 0 7058 6872 2 1368 401 215 41 123 chr12 102674191 102674313 -18583217 - B3 SINE B2 -101 115 4 2 1368 7540 81 6 4 chr12 102674393 102675393 -18582137 - L1_Mus2 LINE L1 0 6566 5569 2 1368 5701 31 4 4 chr12 102675393 102676077 -18581453 - L1Md_F3 LINE L1 0 6584 5901 2 1368 7540 127 5 14 chr12 102676077 102677036 -18580494 - L1_Mus2 LINE L1 -315 5568 4619 2 1368 717 53 0 0 chr12 102677036 102677130 -18580400 + (TTTTC)n Simple_repeat Simple_repeat 2 95 0 2 1368 28567 116 17 48 chr12 102677175 102681071 -18576459 - L1Md_F2 LINE L1 0 6582 2740 2 1368 1088 29 7 0 chr12 102681071 102681207 -18576323 - B1_Mm SINE Alu -1 146 10 2 1368 28567 116 17 48 chr12 102681207 102683760 -18573770 - L1Md_F2 LINE L1 0 2739 220 2 1368 563 243 21 16 chr12 102683765 102683957 -18573573 - L1M2 LINE L1 -2450 3693 3501 2 1368 29 70 0 0 chr12 102684434 102684491 -18573039 + AT_rich Low_complexity Low_complexity 1 57 0 2 1368 1447 138 3 122 chr12 102684655 102684943 -18572587 - RLTR22_Mur LTR ERVK -2 1846 1593 2 1368 34056 48 0 3 chr12 102685095 102690764 -18566766 + L1Md_T LINE L1 1 5589 -297 2 1368 8428 34 0 2 chr12 102690764 102691785 -18565745 + L1Md_T LINE L1 5590 6585 0 2 1368 2335 154 321 15 chr12 102691797 102692411 -18565119 - RLTR22_Mur LTR ERVK -1046 802 1 2 1368 358 269 0 0 chr12 102692412 102692490 -18565040 - B3 SINE B2 -92 124 47 2 1368 240 173 26 39 chr12 102692496 102692574 -18564956 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 2 1368 1904 79 26 4 chr12 102692584 102692851 -18564679 - L1_Mus4 LINE L1 -6 6630 6358 2 1368 257 244 12 93 chr12 102693081 102693167 -18564363 - ID4 SINE ID -1 82 4 2 1368 400 259 12 0 chr12 102693250 102693331 -18564199 - PB1D10 SINE Alu -6 111 30 2 1368 647 222 0 8 chr12 102693386 102693427 -18564103 + B3 SINE B2 1 41 -175 2 1368 347 0 23 0 chr12 102693427 102693470 -18564060 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 1368 647 194 358 5 chr12 102693470 102693590 -18563940 + B3 SINE B2 42 204 -12 2 1368 339 44 0 0 chr12 102693590 102693635 -18563895 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1368 316 286 75 89 chr12 102693732 102693878 -18563652 - MT2B LTR ERVL -313 288 145 2 1368 661 296 35 88 chr12 102694405 102694690 -18562840 + B4A SINE B4 2 271 -21 2 1368 210 324 26 51 chr12 102694787 102694821 -18562709 + B2_Mm1t SINE B2 2 35 -158 2 1368 2283 99 41 0 chr12 102694821 102695135 -18562395 + ORR1A2 LTR MaLR 1 327 0 2 1368 210 324 26 51 chr12 102695135 102695178 -18562352 + B2_Mm1t SINE B2 36 77 -116 2 1368 7060 164 25 74 chr12 102695265 102695467 -18562063 - RMER12B LTR ERVK 0 1404 1254 2 1368 444 51 0 0 chr12 102695467 102695526 -18562004 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1368 7060 164 25 74 chr12 102695526 102695618 -18561912 - RMER12B LTR ERVK -151 1253 1209 2 1368 279 0 0 0 chr12 102695618 102695649 -18561881 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1368 279 0 0 0 chr12 102695649 102695679 -18561851 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1368 7060 164 25 74 chr12 102695679 102696856 -18560674 - RMER12B LTR ERVK -196 1208 4 2 1368 1184 54 0 13 chr12 102696911 102697061 -18560469 + B1_Mus1 SINE Alu 1 148 0 2 1368 315 0 0 0 chr12 102697065 102697100 -18560430 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1368 951 64 0 21 chr12 102697102 102697245 -18560285 + (GAA)n Simple_repeat Simple_repeat 3 142 0 2 1368 1455 167 76 10 chr12 102697435 102697737 -18559793 - RLTR28B LTR ERVL -159 322 1 2 1368 1150 170 50 9 chr12 102698567 102698787 -18558743 + ORR1B1 LTR MaLR 8 236 -158 2 1368 779 110 0 0 chr12 102698798 102698907 -18558623 - B1_Mm SINE Alu -37 110 2 2 1368 877 145 113 0 chr12 102698907 102699065 -18558465 + ORR1B1 LTR MaLR 211 386 -8 2 1368 1144 90 0 100 chr12 102699174 102699384 -18558146 - L1Md_F2 LINE L1 0 6582 6394 2 1368 190 333 0 0 chr12 102699474 102699525 -18558005 - L2c LINE L2 -68 3319 3269 2 1368 357 117 0 0 chr12 102700362 102700422 -18557108 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 2 1368 684 246 133 6 chr12 102700920 102701100 -18556430 - B3 SINE B2 -13 203 1 2 1368 247 306 150 20 chr12 102701597 102701697 -18555833 + AluF_3 SINE Alu 138 207 -104 2 1368 1179 216 122 43 chr12 102701783 102702150 -18555380 - RMER16 LTR ERVK 0 533 1 2 1368 27 29 0 0 chr12 102702227 102702261 -18555269 + AT_rich Low_complexity Low_complexity 1 34 0 2 1368 15669 50 2 9 chr12 102702612 102704703 -18552827 + L1_Mm LINE L1 3428 5505 -378 2 1368 6411 47 8 1 chr12 102704703 102705499 -18552031 + L1Md_F3 LINE L1 5782 6582 -2 2 1368 6401 60 0 1 chr12 102705776 102706625 -18550905 - L1Md_F3 LINE L1 -13 5870 5023 2 1368 5841 36 9 0 chr12 102706625 102707390 -18550140 + L1Md_F3 LINE L1 5879 6584 0 2 1368 339 382 106 42 chr12 102707675 102708033 -18549497 - MER21B LTR ERV1 -391 472 92 2 1368 234 0 0 0 chr12 102708586 102708612 -18548918 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1368 578 227 43 50 chr12 102708734 102708873 -18548657 - B1_Mur1 SINE Alu -2 147 10 2 1368 360 0 0 0 chr12 102708982 102709022 -18548508 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1368 312 333 33 54 chr12 102709097 102709281 -18548249 - LTR85a LTR Gypsy? -105 597 418 3 1368 935 218 12 112 chr12 102709502 102709760 -18547770 + MT2A LTR ERVL 3 234 -299 3 1368 2465 247 70 105 chr12 102709771 102710663 -18546867 - RMER13A LTR ERVK 0 860 1 3 1368 526 274 35 9 chr12 102710663 102710820 -18546710 + MT2A LTR ERVL 349 554 -47 3 1368 316 40 40 0 chr12 102710841 102710891 -18546639 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1368 576 239 103 13 chr12 102711053 102711286 -18546244 + MERVL_2A-int LTR ERVL 39 292 -5469 3 1368 186 194 48 0 chr12 102711286 102711348 -18546182 + GA-rich Low_complexity Low_complexity 2 66 0 3 1368 16561 224 45 51 chr12 102711350 102711528 -18546002 + MERVL_2A-int LTR ERVL 276 448 -5313 3 1368 992 111 0 0 chr12 102711528 102711663 -18545867 + B1_Mus1 SINE Alu 1 135 -13 3 1368 16561 224 45 51 chr12 102711663 102712767 -18544763 + MERVL_2A-int LTR ERVL 449 1483 -4278 3 1368 1039 174 27 40 chr12 102712767 102712989 -18544541 - Lx4A LINE L1 -2 7056 6838 3 1368 16561 224 45 51 chr12 102712989 102716506 -18541024 + MERVL_2A-int LTR ERVL 1484 5046 -715 3 1368 1934 191 24 9 chr12 102716508 102716961 -18540569 + MERVL_2A-int LTR ERVL 5231 5690 -71 3 1368 827 219 12 0 chr12 102717306 102717470 -18540060 + MERVL_2A-int LTR ERVL 4782 4947 -814 3 1368 234 123 0 81 chr12 102717740 102717802 -18539728 + ORR1A3-int LTR MaLR 583 639 -1324 3 1368 383 89 0 0 chr12 102717802 102717858 -18539672 + MERVL_2A-int LTR ERVL 5706 5761 0 3 1368 341 233 0 14 chr12 102717860 102717934 -18539596 + MT2A LTR ERVL 3 75 -458 3 1368 3054 77 5 29 chr12 102717934 102718390 -18539140 - RMER16 LTR ERVK 0 533 1 3 1368 876 253 57 36 chr12 102718390 102718750 -18538780 + MT2A LTR ERVL 70 540 -61 3 1368 564 15 0 0 chr12 102718750 102718815 -18538715 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 3 1368 687 249 36 36 chr12 102718815 102718852 -18538678 + MT2A LTR ERVL 490 533 0 3 1368 4089 210 117 26 chr12 102719371 102720099 -18537431 + RMER12 LTR ERVK 1 772 -550 3 1368 507 112 0 0 chr12 102720099 102720179 -18537351 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 3 1368 4089 210 117 26 chr12 102720179 102720550 -18536980 + RMER12 LTR ERVK 773 1199 -123 3 1368 279 266 71 16 chr12 102720889 102721015 -18536515 + L1MA5 LINE L1 6166 6298 -2 3 1368 614 126 10 0 chr12 102721264 102721367 -18536163 + (TCC)n Simple_repeat Simple_repeat 3 106 0 3 1368 356 185 15 0 chr12 102721653 102721718 -18535812 + ID4_ SINE ID 7 72 -11 3 1368 227 255 93 84 chr12 102721727 102721760 -18535770 + B3 SINE B2 7 114 -102 3 1368 284 274 16 16 chr12 102722271 102722397 -18535133 - L1MB7 LINE L1 -9 6175 6050 3 1368 1519 184 34 77 chr12 102722421 102722586 -18534944 + RLTR12B LTR ERVK 1 144 -384 3 1368 1799 146 24 42 chr12 102722586 102722921 -18534609 - ORR1A4 LTR MaLR 0 329 1 3 1368 1519 184 34 77 chr12 102722921 102723108 -18534422 + RLTR12B LTR ERVK 145 338 -190 3 1368 457 268 55 37 chr12 102723211 102723374 -18534156 - MER3 DNA MER1_type 0 209 44 3 1368 225 94 0 0 chr12 102723572 102723604 -18533926 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1368 880 184 81 0 chr12 102723604 102723789 -18533741 + RLTR12B LTR ERVK 307 506 -22 3 1368 2160 216 41 21 chr12 102723791 102724306 -18533224 - RLTR11A2 LTR ERVK 0 527 3 3 1368 3813 229 46 33 chr12 102724314 102725555 -18531975 - MYSERV16_I-int LTR ERVK -5 2321 1065 3 1368 278 263 103 79 chr12 102725555 102725720 -18531810 - RMER4B LTR ERVK -46 539 287 3 1368 1048 227 52 106 chr12 102725720 102726144 -18531386 - MYSERV16_I-int LTR ERVK -1430 896 496 3 1368 21 0 0 0 chr12 102726212 102726233 -18531297 + AT_rich Low_complexity Low_complexity 1 21 0 3 1368 1667 217 20 26 chr12 102726240 102726734 -18530796 - MYSERV16_I-int LTR ERVK -1902 424 5 3 1368 411 298 16 31 chr12 102726867 102726995 -18530535 - B1_Mur3 SINE Alu -6 143 18 3 1368 525 223 16 62 chr12 102727102 102727231 -18530299 - B1_Mur3 SINE Alu -6 143 21 3 1368 21406 105 18 13 chr12 102727265 102728630 -18528900 - L1_Mus1 LINE L1 0 6567 5287 3 1368 955 106 0 0 chr12 102728630 102728772 -18528758 - L1Md_F2 LINE L1 -14 6568 6427 3 1368 24028 114 14 5 chr12 102728772 102729856 -18527674 - L1_Mus1 LINE L1 -592 5291 4197 3 1368 180 0 0 0 chr12 102729856 102729876 -18527654 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1368 473 92 13 0 chr12 102729876 102729951 -18527579 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 1368 24028 114 14 5 chr12 102729951 102732840 -18524690 - L1_Mus1 LINE L1 -1687 4196 1285 3 1368 276 266 26 17 chr12 102732825 102732940 -18524590 - L1_Mus1 LINE L1 -5831 785 670 3 1368 481 204 31 159 chr12 102733014 102733177 -18524353 - L1VL1 LINE L1 -6065 357 216 3 1368 1669 157 91 6 chr12 102733184 102733504 -18524026 - ORR1B1 LTR MaLR -1 393 47 3 1368 296 370 5 5 chr12 102734124 102734309 -18523221 + MYSERV6-int LTR ERVK 117 301 -8658 3 1368 3677 128 100 2 chr12 102734412 102735021 -18522509 - Lx2 LINE L1 -3 6994 6326 3 1368 3102 218 60 55 chr12 102735310 102735597 -18521933 + MYSERV6-int LTR ERVK 7813 7987 -972 3 1368 2980 39 11 0 chr12 102735597 102735961 -18521569 - L1Md_F2 LINE L1 0 6582 6215 3 1368 3102 201 65 43 chr12 102735961 102736182 -18521348 + MYSERV6-int LTR ERVK 7988 8207 -752 3 1368 3385 98 8 2 chr12 102736182 102736654 -18520876 + MT2C_Mm LTR ERVL 1 475 0 3 1368 6312 111 26 71 chr12 102736658 102737806 -18519724 + MTB-int LTR MaLR 3 1098 0 3 1368 3042 73 5 0 chr12 102737806 102738202 -18519328 + MTB LTR MaLR 1 398 -2 3 1368 3102 201 65 43 chr12 102738202 102738735 -18518795 + MYSERV6-int LTR ERVK 8208 8745 -214 3 1368 30152 86 17 16 chr12 102738765 102743925 -18513605 + L1Md_F2 LINE L1 446 5586 -297 3 1368 7567 71 9 2 chr12 102743925 102744914 -18512616 + L1Md_F2 LINE L1 5587 6582 0 3 1368 361 221 13 0 chr12 102744914 102744991 -18512539 + MYSERV6-int LTR ERVK 8788 8865 -94 3 1368 2324 177 59 20 chr12 102745050 102745558 -18511972 + RLTR12B LTR ERVK 1 528 0 3 1368 180 0 0 0 chr12 102745809 102745829 -18511701 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1368 228 67 0 0 chr12 102746439 102746469 -18511061 - L1_Mus3 LINE L1 -130 6506 6477 3 1368 641 82 32 32 chr12 102746469 102746595 -18510935 + L1_Mus3 LINE L1 6508 6633 -5 3 1368 223 382 0 38 chr12 102747104 102747210 -18510320 + PB1D9 SINE Alu 1 102 -18 3 1368 463 252 18 0 chr12 102748019 102748130 -18509400 - PB1D9 SINE Alu -7 113 1 3 1368 225 0 0 0 chr12 102749308 102749333 -18508197 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1368 406 246 35 43 chr12 102749674 102749789 -18507741 + PB1D7 SINE Alu 5 118 -2 3 1368 249 185 0 0 chr12 102750142 102750207 -18507323 + T-rich Low_complexity Low_complexity 1 65 0 3 1368 987 251 63 20 chr12 102750207 102750557 -18506973 + L1_Rod LINE L1 3802 4166 -1681 3 1368 22755 125 95 10 chr12 102750572 102756284 -18501246 - L1_Mus3 LINE L1 -7 6631 404 3 1368 748 302 19 53 chr12 102756284 102756812 -18500718 + L1_Mur3 LINE L1 4154 4663 -1217 3 1368 6919 86 14 12 chr12 102756896 102758009 -18499521 - MusHAL1 LINE L1 -1586 1126 12 3 1368 788 312 27 38 chr12 102758098 102758391 -18499139 + B4A SINE B4 1 290 -2 3 1368 423 56 0 0 chr12 102758403 102758457 -18499073 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 21 2899 250 67 36 chr12 102759518 102760547 -18496983 - Lx9 LINE L1 -15 7629 6569 3 1369 698 191 29 14 chr12 102760560 102760698 -18496832 - RMER6C LTR ERVK 0 690 551 3 1369 9502 103 3 3 chr12 102760698 102762896 -18494634 - L1_Mus1 LINE L1 -1 6566 4369 3 1369 21756 130 48 11 chr12 102762922 102767147 -18490383 - L1Md_F2 LINE L1 0 6582 2148 3 1369 2597 28 50 0 chr12 102767147 102767469 -18490061 - L1Md_F3 LINE L1 0 6584 6247 3 1369 21756 152 43 9 chr12 102767469 102768883 -18488647 - L1Md_F2 LINE L1 -3736 2147 725 3 1369 358 277 14 35 chr12 102768892 102769034 -18488496 - L1Md_F2 LINE L1 -5814 802 664 3 1369 337 272 0 0 chr12 102769154 102769268 -18488262 - L1VL1 LINE L1 -6030 392 279 3 1369 713 262 44 16 chr12 102769341 102769589 -18487941 - RMER6C LTR ERVK -115 575 321 3 1369 1950 226 35 4 chr12 102769597 102770082 -18487448 - Lx3C LINE L1 -2 6974 6475 3 1369 1120 223 49 17 chr12 102770072 102770419 -18487111 - Lx2B LINE L1 -656 6344 5987 3 1369 1177 144 0 9 chr12 102770388 102770612 -18486918 - L1_Mur1 LINE L1 -1824 4053 3832 3 1369 21 0 0 0 chr12 102770612 102770633 -18486897 + AT_rich Low_complexity Low_complexity 1 21 0 3 1369 2193 106 12 6 chr12 102770638 102770962 -18486568 - IAPEY2_LTR LTR ERVK 0 357 32 3 1369 10876 166 21 7 chr12 102770975 102771618 -18485912 - L1_Mur1 LINE L1 -2051 3835 3162 3 1369 243 0 0 0 chr12 102771618 102771645 -18485885 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1369 10876 166 21 7 chr12 102771645 102773277 -18484253 - L1_Mur1 LINE L1 -2725 3161 1527 3 1369 1336 160 171 17 chr12 102773321 102773614 -18483916 - RMER6C LTR ERVK -352 338 1 3 1369 572 264 32 6 chr12 102773614 102773770 -18483760 - Lx9 LINE L1 -1141 6503 6344 3 1369 333 118 0 0 chr12 102773778 102773829 -18483701 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1369 874 251 57 19 chr12 102773960 102774347 -18483183 - Lx9 LINE L1 -1615 6029 5590 3 1369 743 118 45 45 chr12 102774351 102774383 -18483147 - L1_Mur3 LINE L1 -443 5437 5410 3 1369 4776 53 3 2 chr12 102774383 102774969 -18482561 - LTRIS_Mus LTR ERV1 0 587 1 3 1369 743 118 45 45 chr12 102774969 102775113 -18482417 - L1_Mur3 LINE L1 -471 5409 5261 3 1369 1685 206 57 27 chr12 102775083 102775538 -18481992 - L1_Mur3 LINE L1 -1211 4669 4206 3 1369 285 29 0 0 chr12 102775538 102775572 -18481958 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1369 477 0 0 0 chr12 102775572 102775624 -18481906 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1369 1685 206 57 27 chr12 102775624 102775692 -18481838 - L1_Mur3 LINE L1 -1675 4205 4130 3 1369 3375 239 42 34 chr12 102775715 102777275 -18480255 - Lx5 LINE L1 -9 7041 5536 3 1369 8036 33 1 0 chr12 102777288 102778282 -18479248 - L1Md_T LINE L1 -1 6581 5587 3 1369 544 164 8 8 chr12 102778291 102778408 -18479122 - Lx5 LINE L1 -603 5274 5158 3 1369 1037 202 19 159 chr12 102778411 102778782 -18478748 - RMER6D LTR ERVK -101 619 301 3 1369 738 238 41 32 chr12 102779101 102779322 -18478208 + Lx8 LINE L1 6233 6455 -1018 3 1369 415 334 56 36 chr12 102779965 102780139 -18477391 - B3A SINE B2 -10 185 16 3 1369 430 405 20 0 chr12 102780671 102780824 -18476706 + B3 SINE B2 26 181 -35 3 1369 573 192 55 23 chr12 102780827 102780955 -18476575 + MTD LTR MaLR 8 139 -280 3 1369 397 284 82 7 chr12 102780966 102781101 -18476429 + MTD LTR MaLR 236 380 -39 3 1369 230 294 59 0 chr12 102781561 102781646 -18475884 - MIR SINE MIR -101 161 72 3 1369 25680 64 13 3 chr12 102781646 102785237 -18472293 + L1Md_F2 LINE L1 1960 5586 -297 3 1369 7996 47 5 1 chr12 102785238 102786217 -18471313 + L1Md_F2 LINE L1 5588 6570 -12 3 1369 1046 72 0 0 chr12 102786217 102786355 -18471175 + L1Md_F2 LINE L1 5449 5586 -297 3 1369 7858 62 1 1 chr12 102786356 102787348 -18470182 + L1Md_F2 LINE L1 5588 6579 -3 3 1369 360 61 0 0 chr12 102788096 102788145 -18469385 - B1_Mus1 SINE Alu -99 49 1 3 1369 21 0 0 0 chr12 102788415 102788436 -18469094 + AT_rich Low_complexity Low_complexity 1 21 0 3 1369 399 353 42 47 chr12 102788534 102788748 -18468782 + B4 SINE B4 35 247 -45 3 1369 552 268 62 19 chr12 102789232 102789392 -18468138 - MER34 LTR ERV1 -17 525 359 3 1369 544 287 76 107 chr12 102789476 102789804 -18467726 - Lx8 LINE L1 -298 7175 6858 3 1369 447 19 0 0 chr12 102789821 102789873 -18467657 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1369 497 335 19 6 chr12 102789876 102790032 -18467498 - MTE2a LTR MaLR -221 158 1 3 1369 464 268 306 0 chr12 102790033 102790190 -18467340 + B3 SINE B2 1 205 -11 3 1369 7578 92 11 1 chr12 102790271 102792086 -18465444 - L1_Mus1 LINE L1 -3 6564 4732 3 1369 443 256 51 8 chr12 102792480 102792598 -18464932 - ETnERV2-int LTR ERVK -210 7196 7074 3 1369 10859 110 6 2 chr12 102792602 102794334 -18463196 - L1Md_F LINE L1 -1145 4738 3000 3 1369 274 154 91 15 chr12 102794332 102794398 -18463132 - L1Md_F LINE L1 -5882 734 664 3 1369 426 245 31 72 chr12 102794449 102794735 -18462795 - L1VL1 LINE L1 -6030 392 1 3 1369 463 320 38 45 chr12 102795366 102795523 -18462007 + RSINE1 SINE B4 4 159 -6 3 1369 181 340 108 64 chr12 102795583 102795787 -18461743 - L2 LINE L2 -888 2531 2319 3 1369 385 281 0 10 chr12 102796579 102796676 -18460854 - PB1D10 SINE Alu -1 116 21 3 1369 383 278 205 17 chr12 102796698 102796825 -18460705 - L1MC3 LINE L1 -1655 6130 5959 3 1369 411 21 0 0 chr12 102796825 102796873 -18460657 + (TTG)n Simple_repeat Simple_repeat 2 49 0 3 1369 383 278 205 17 chr12 102796873 102796979 -18460551 - L1MC3 LINE L1 -1827 5958 5854 3 1369 770 282 6 9 chr12 102796987 102797223 -18460307 + Lx9 LINE L1 7101 7455 -189 3 1369 255 125 0 0 chr12 102797223 102797263 -18460267 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1369 260 370 58 29 chr12 102797263 102797336 -18460194 + Lx9 LINE L1 7334 7418 -55 3 1369 388 152 0 0 chr12 102797456 102797535 -18459995 + MusHAL1 LINE L1 163 241 -2471 4 1369 7947 121 13 6 chr12 102797505 102799572 -18457958 + L1_Mus3 LINE L1 4556 6637 -1 4 1369 10537 98 13 19 chr12 102799632 102801376 -18456154 + MusHAL1 LINE L1 348 2080 -632 4 1369 6879 70 12 28 chr12 102802556 102803593 -18453937 - L1_Mus2 LINE L1 -1 6565 5543 4 1369 4950 110 26 5 chr12 102803596 102804392 -18453138 + L1_Mus2 LINE L1 4738 5550 -333 4 1369 8455 99 33 11 chr12 102804384 102805786 -18451744 - MusHAL1 LINE L1 -42 3311 1879 4 1369 4906 89 6 5 chr12 102805784 102806947 -18450583 - MusHAL1 LINE L1 -1977 1376 216 4 1369 29 0 0 0 chr12 102807041 102807070 -18450460 + AT_rich Low_complexity Low_complexity 1 29 0 4 1369 464 279 199 6 chr12 102807246 102807582 -18449948 - L1MC3 LINE L1 -567 5766 5366 3 1369 231 61 0 0 chr12 102807596 102807629 -18449901 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1369 209 174 0 42 chr12 102807652 102807700 -18449830 + CT-rich Low_complexity Low_complexity 4 49 0 4 1369 427 227 113 0 chr12 102807813 102807963 -18449567 + RMER10A LTR ERVL 269 435 -7 4 1369 240 163 0 0 chr12 102807964 102808007 -18449523 + T-rich Low_complexity Low_complexity 2 44 0 4 1369 414 97 0 0 chr12 102808030 102808092 -18449438 - L1Md_F2 LINE L1 -17 6565 6504 4 1369 26867 73 22 87 chr12 102808098 102813524 -18444006 - L1Md_F LINE L1 -438 5445 371 4 1369 27 0 0 0 chr12 102813590 102813617 -18443913 + AT_rich Low_complexity Low_complexity 1 27 0 4 1369 22 0 0 0 chr12 102813903 102813925 -18443605 + AT_rich Low_complexity Low_complexity 1 22 0 4 1369 297 217 37 18 chr12 102814325 102814489 -18443041 + (TATG)n Simple_repeat Simple_repeat 4 170 0 4 1369 384 237 6 11 chr12 102814451 102814626 -18442904 + (TG)n Simple_repeat Simple_repeat 2 175 0 4 1369 405 272 61 53 chr12 102814949 102815093 -18442437 + B1_Mur1 SINE Alu 2 146 -2 4 1369 1861 64 8 8 chr12 102815106 102815359 -18442171 + L1Md_F2 LINE L1 6318 6570 -12 4 1369 4326 133 32 13 chr12 102815366 102816112 -18441418 + RLTR22_Mur LTR ERVK 15 774 -1074 4 1369 269 349 68 62 chr12 102816118 102816295 -18441235 + RMER12 LTR ERVK 1145 1322 0 4 1369 839 179 7 0 chr12 102816362 102816507 -18441023 + B1_Mur4 SINE Alu 5 150 0 4 1369 700 283 29 6 chr12 102816594 102816768 -18440762 + B3A SINE B2 1 178 -20 4 1369 303 325 68 11 chr12 102816799 102816989 -18440541 - L2 LINE L2 -528 2891 2691 4 1369 227 398 0 39 chr12 102817088 102817190 -18440340 + ID_B1 SINE B4 78 175 -49 4 1369 663 13 0 0 chr12 102817289 102817365 -18440165 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1369 3572 196 6 9 chr12 102817401 102818095 -18439435 - Lx5 LINE L1 -138 6912 6221 4 1369 2705 198 40 22 chr12 102818146 102819311 -18438219 - Lx5 LINE L1 -12 6570 5407 4 1369 2579 75 56 3 chr12 102819311 102819670 -18437860 - L1Md_F2 LINE L1 -11 6571 6194 4 1369 781 164 0 0 chr12 102819670 102819804 -18437726 + L1_Mm LINE L1 5023 5156 -727 4 1369 10098 139 50 9 chr12 102819805 102822356 -18435174 - L1_Mur1 LINE L1 -2815 3071 210 4 1369 723 87 0 0 chr12 102822380 102822484 -18435046 + (TC)n Simple_repeat Simple_repeat 2 105 0 4 1369 823 269 9 61 chr12 102822598 102822696 -18434834 + B3 SINE B2 2 93 -123 4 1369 4641 186 57 8 chr12 102822696 102823562 -18433968 + RMER13B LTR ERVK 1 908 0 4 1369 823 269 9 61 chr12 102823562 102823677 -18433853 + B3 SINE B2 94 204 -12 4 1369 369 0 0 0 chr12 102823808 102823849 -18433681 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1369 381 212 0 0 chr12 102823951 102824012 -18433518 - B3A SINE B2 -122 76 16 4 1369 11701 100 18 45 chr12 102824012 102824746 -18432784 + RLTR22_Mur LTR ERVK 1 722 -1126 4 1369 216 0 0 0 chr12 102824746 102824770 -18432760 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1369 11701 100 18 45 chr12 102824770 102825934 -18431596 + RLTR22_Mur LTR ERVK 723 1847 -1 4 1369 23 33 0 0 chr12 102826722 102826752 -18430778 + AT_rich Low_complexity Low_complexity 1 30 0 4 1369 575 132 0 32 chr12 102826776 102826870 -18430660 + B1_Mur4 SINE Alu 60 150 0 4 1369 1764 104 75 0 chr12 102826920 102827198 -18430332 - L1_Mus4 LINE L1 -116 6520 6222 4 1369 630 206 103 0 chr12 102827255 102827410 -18430120 - B3 SINE B2 0 216 46 4 1369 416 299 14 88 chr12 102827425 102827572 -18429958 - RSINE1 SINE B4 -6 159 24 4 1369 3281 98 29 4 chr12 102827615 102828098 -18429432 + L1_Mus3 LINE L1 6144 6638 0 4 1369 963 38 15 8 chr12 102828102 102828235 -18429295 + (GGGA)n Simple_repeat Simple_repeat 4 137 0 4 1369 221 179 26 0 chr12 102829292 102829331 -18428199 + B3A SINE B2 40 79 -119 4 1369 22 35 0 0 chr12 102829581 102829610 -18427920 + AT_rich Low_complexity Low_complexity 1 29 0 4 1369 22 35 0 0 chr12 102829799 102829828 -18427702 + AT_rich Low_complexity Low_complexity 1 29 0 4 1369 687 230 15 0 chr12 102829974 102830109 -18427421 + B1_Mur1 SINE Alu 13 149 0 4 1369 25 0 0 0 chr12 102830338 102830363 -18427167 + AT_rich Low_complexity Low_complexity 1 25 0 4 1369 512 317 8 154 chr12 102830427 102830673 -18426857 + MTE2a LTR MaLR 3 212 -167 4 1369 496 42 28 0 chr12 102830709 102830780 -18426750 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1369 654 300 7 0 chr12 102830782 102830932 -18426598 - B3 SINE B2 -64 152 2 4 1369 266 348 11 11 chr12 102830932 102831019 -18426511 + MTE2a LTR MaLR 201 287 -92 4 1369 22 0 0 0 chr12 102831434 102831456 -18426074 + AT_rich Low_complexity Low_complexity 1 22 0 4 1369 382 336 56 8 chr12 102831898 102832024 -18425506 + B4A SINE B4 13 144 -148 4 1369 216 246 0 95 chr12 102831994 102832057 -18425473 + RSINE1 SINE B4 68 124 -41 4 1369 356 0 23 0 chr12 102832057 102832101 -18425429 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1369 1915 0 0 14 chr12 102832573 102832796 -18424734 + L1Md_T LINE L1 6363 6582 0 4 1369 522 337 60 48 chr12 102833124 102833392 -18424138 - B4A SINE B4 -18 274 4 4 1369 360 0 0 0 chr12 102833413 102833453 -18424077 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1369 26936 134 29 16 chr12 102834024 102840056 -18417474 - L1_Mus3 LINE L1 0 6638 536 4 1369 748 45 9 9 chr12 102841044 102841157 -18416373 + L1Md_F2 LINE L1 6458 6570 -12 4 1369 406 333 55 7 chr12 102841216 102841361 -18416169 + RSINE1 SINE B4 12 163 -2 4 1369 381 308 122 47 chr12 102842514 102842875 -18414655 + L2a LINE L2 2961 3348 -78 4 1369 297 305 31 31 chr12 102843019 102843117 -18414413 + B1F SINE Alu 10 107 -42 4 1369 576 0 0 0 chr12 102843133 102843197 -18414333 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1369 1392 201 22 9 chr12 102843498 102843814 -18413716 - RLTR46 LTR ERVK 0 320 1 4 1369 407 288 91 0 chr12 102844202 102844334 -18413196 - B1F1 SINE Alu 0 149 6 4 1369 471 177 40 247 chr12 102844972 102845122 -18412408 + B3 SINE B2 77 206 -10 4 1369 24037 164 18 12 chr12 102845357 102851568 -18405962 - Lx2 LINE L1 -1 6996 755 4 1369 37868 11 1 7 chr12 102851569 102856961 -18400569 + L1Md_A LINE L1 231 5586 -297 4 1369 8722 18 0 0 chr12 102856962 102857957 -18399573 + L1Md_A LINE L1 5588 6582 0 4 1369 649 247 7 7 chr12 102857962 102858113 -18399417 - Lx2 LINE L1 -5891 766 616 4 1369 559 247 110 92 chr12 102858112 102858463 -18399067 + L1MA4 LINE L1 5615 5969 -334 4 1369 1580 58 0 5 chr12 102858541 102858749 -18398781 - L1Md_F2 LINE L1 -466 5417 5211 4 1369 1476 46 0 0 chr12 102858745 102858920 -18398610 + L1Md_F2 LINE L1 5412 5586 -297 4 1369 7379 64 13 12 chr12 102858921 102859914 -18397616 + L1Md_F2 LINE L1 5588 6581 -1 4 1369 201 161 0 0 chr12 102860010 102860041 -18397489 + (TATG)n Simple_repeat Simple_repeat 2 32 0 4 1369 420 181 0 0 chr12 102860048 102860131 -18397399 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1369 234 217 139 42 chr12 102860757 102860829 -18396701 + B3A SINE B2 2 80 -118 4 1369 25 0 0 0 chr12 102860878 102860903 -18396627 + AT_rich Low_complexity Low_complexity 1 25 0 4 1369 555 304 7 0 chr12 102861112 102861250 -18396280 + ID_B1 SINE B4 86 224 0 4 1369 222 118 0 0 chr12 102861402 102861436 -18396094 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 4 1369 359 280 20 10 chr12 102861472 102861551 -18395979 - RMER12 LTR ERVK -472 850 770 4 1369 356 0 23 0 chr12 102861551 102861595 -18395935 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1369 359 280 20 10 chr12 102861595 102861616 -18395914 - RMER12 LTR ERVK -553 769 749 4 1369 310 247 0 27 chr12 102862228 102862303 -18395227 + ID4_ SINE ID 2 74 -9 4 1369 921 232 49 10 chr12 102862307 102862512 -18395018 - B3 SINE B2 -2 214 2 4 1369 274 174 84 28 chr12 102864404 102864475 -18393055 - Lx4A LINE L1 -457 6601 6527 4 1369 10470 149 42 119 chr12 102864448 102864591 -18392939 + L1_Mur2 LINE L1 2734 2896 -2981 4 1369 1205 130 11 0 chr12 102864591 102864776 -18392754 + B2_Mm2 SINE B2 2 188 -7 4 1369 10470 149 42 119 chr12 102864776 102866731 -18390799 + L1_Mur2 LINE L1 2897 4716 -1161 4 1369 465 62 0 0 chr12 102866731 102866796 -18390734 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1369 10470 149 42 119 chr12 102866796 102867382 -18390148 + L1_Mur2 LINE L1 4717 5213 -664 4 1369 2355 169 55 5 chr12 102867391 102867445 -18390085 - Lx5 LINE L1 -424 6626 6570 4 1369 498 17 0 0 chr12 102867445 102867504 -18390026 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1369 2355 169 55 5 chr12 102867504 102867889 -18389641 - Lx5 LINE L1 -481 6569 6165 4 1369 21 36 0 0 chr12 102868088 102868116 -18389414 + AT_rich Low_complexity Low_complexity 1 28 0 4 1369 5114 99 56 10 chr12 102868261 102869035 -18388495 - Lx LINE L1 -5 6649 5841 4 1369 1841 149 44 79 chr12 102869254 102869661 -18387869 + RLTR9C LTR ERVK 1 393 0 4 1369 37 52 0 0 chr12 102869775 102869833 -18387697 + AT_rich Low_complexity Low_complexity 1 58 0 4 1369 432 282 74 24 chr12 102870062 102870375 -18387155 - ORR1D2 LTR MaLR 0 370 9 4 1369 4504 47 20 7 chr12 102870532 102871089 -18386441 - LTRIS2 LTR ERV1 0 564 1 4 1369 316 48 0 0 chr12 102871126 102871168 -18386362 - LTRIS2 LTR ERV1 -522 42 1 4 1369 717 316 144 28 chr12 102871298 102871686 -18385844 + MER88 LTR ERVL 3 435 -29 4 1369 302 239 68 0 chr12 102871745 102871833 -18385697 + MER34A LTR ERV1 8 101 -470 4 1369 1097 229 139 48 chr12 102871838 102872169 -18385361 + ORR1D2 LTR MaLR 10 370 0 4 1369 441 319 111 67 chr12 102872169 102872557 -18384973 + MER34A LTR ERV1 92 557 -14 4 1369 313 346 131 4 chr12 102872572 102872816 -18384714 - L2 LINE L2 -508 2911 2637 4 1369 249 356 0 108 chr12 102873118 102873247 -18384283 + MER21B LTR ERV1 180 294 -569 5 1369 304 318 31 69 chr12 102873398 102873442 -18384088 + RLTR22_Mur LTR ERVK 861 904 -500 5 1369 779 123 202 25 chr12 102873442 102873600 -18383930 + B2_Mm2 SINE B2 1 186 -9 5 1369 392 271 22 71 chr12 102873600 102873790 -18383740 + RLTR22_Mur LTR ERVK 597 771 -1077 5 1369 1196 158 163 34 chr12 102873936 102874231 -18383299 + RMER12 LTR ERVK 990 1322 0 5 1369 655 307 60 36 chr12 102874554 102874804 -18382726 - MLT1A0 LTR MaLR -76 289 34 5 1369 234 0 0 0 chr12 102875342 102875368 -18382162 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1369 25 0 0 0 chr12 102875408 102875433 -18382097 + AT_rich Low_complexity Low_complexity 1 25 0 5 1369 31009 88 15 4 chr12 102875652 102880798 -18376732 + L1Md_F2 LINE L1 381 5586 -297 5 1369 7570 69 4 6 chr12 102880798 102881793 -18375737 + L1Md_F2 LINE L1 5587 6579 -3 5 1369 534 211 36 36 chr12 102882996 102883134 -18374396 + Lx6 LINE L1 6614 6751 -709 5 1369 25 0 0 0 chr12 102884478 102884503 -18373027 + AT_rich Low_complexity Low_complexity 1 25 0 5 1369 370 233 23 11 chr12 102885124 102885211 -18372319 - RMER12 LTR ERVK -471 851 764 5 1369 1541 57 0 5 chr12 102885642 102885836 -18371694 - B2_Mm1a SINE B2 0 193 1 5 1369 28 107 0 0 chr12 102885926 102886038 -18371492 + AT_rich Low_complexity Low_complexity 1 112 0 5 1369 459 0 0 0 chr12 102886634 102886685 -18370845 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1369 443 346 15 7 chr12 102886687 102886824 -18370706 - RSINE1 SINE B4 -26 139 2 5 1369 313 73 0 0 chr12 102887580 102887621 -18369909 - U2 snRNA snRNA -147 41 1 5 1369 300 308 9 45 chr12 102888142 102888254 -18369276 - Charlie15a DNA MER1_type 0 224 117 5 1369 208 125 76 30 chr12 102888796 102888862 -18368668 + (TATAA)n Simple_repeat Simple_repeat 2 70 0 5 1369 276 290 64 11 chr12 102889870 102889964 -18367566 + MLT1B LTR MaLR 246 344 -46 5 1369 366 271 39 9 chr12 102890176 102890284 -18367246 - B4A SINE B4 -39 126 9 5 1369 284 0 28 0 chr12 102891073 102891109 -18366421 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 171 2392 83 57 8 chr12 102891236 102891563 -18365967 - L1_Mus3 LINE L1 -537 6101 5770 5 1370 4333 65 4 2 chr12 102891563 102892118 -18365412 + L1_Mus3 LINE L1 6080 6635 -3 5 1370 2392 83 57 8 chr12 102892118 102892143 -18365387 - L1_Mus3 LINE L1 -869 5769 5732 5 1370 4357 172 28 17 chr12 102892600 102893552 -18363978 + Lx5 LINE L1 882 1859 -4018 5 1370 5440 85 85 12 chr12 102893552 102894395 -18363135 + RMER17A2 LTR ERVK 1 905 -1 5 1370 4357 172 31 16 chr12 102894395 102894726 -18362804 + Lx5 LINE L1 1860 2179 -3698 5 1370 225 185 100 71 chr12 102894726 102894796 -18362734 - Charlie18a DNA MER1_type -135 207 136 5 1370 7219 158 208 14 chr12 102894797 102897042 -18360488 + Lx5 LINE L1 4442 7050 0 5 1370 395 68 34 0 chr12 102897051 102897110 -18360420 - L1_Mur2 LINE L1 -1425 4452 4392 5 1370 3150 151 13 9 chr12 102897119 102897660 -18359870 + Lx2 LINE L1 5908 6450 -547 5 1370 8859 134 12 7 chr12 102897654 102899268 -18358262 - Lx2 LINE L1 -39 6958 5336 5 1370 11524 88 9 13 chr12 102899270 102901675 -18355855 + L1_Mus1 LINE L1 4171 6567 0 5 1370 512 288 5 35 chr12 102901682 102901880 -18355650 + L1M2 LINE L1 4882 5073 -1067 5 1370 30 69 0 0 chr12 102901888 102901946 -18355584 + AT_rich Low_complexity Low_complexity 1 58 0 5 1370 361 297 17 43 chr12 102901981 102902097 -18355433 - B3A SINE B2 -103 113 1 5 1370 539 276 39 16 chr12 102902099 102902357 -18355173 + L1M2 LINE L1 5079 5342 -801 5 1370 241 245 0 0 chr12 102902357 102902406 -18355124 + GA-rich Low_complexity Low_complexity 6 54 0 5 1370 296 320 75 38 chr12 102902585 102902744 -18354786 - MER5B DNA MER1_type -2 176 12 5 1370 35 41 0 0 chr12 102902770 102902819 -18354711 + AT_rich Low_complexity Low_complexity 1 49 0 5 1370 451 294 45 18 chr12 102903080 102903191 -18354339 + RSINE1 SINE B4 37 150 -15 5 1370 289 302 32 0 chr12 102903276 102903339 -18354191 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 5 1370 31 58 0 0 chr12 102903577 102903629 -18353901 + AT_rich Low_complexity Low_complexity 1 52 0 5 1370 507 127 0 0 chr12 102904037 102904108 -18353422 + Lx3B LINE L1 6403 6473 -500 5 1370 559 219 38 24 chr12 102904084 102904249 -18353281 + Lx3B LINE L1 6817 7006 -3 5 1370 1172 173 56 0 chr12 102905185 102905399 -18352131 - URR1A DNA MER1_type 0 226 1 5 1370 24 96 0 0 chr12 102905484 102905557 -18351973 + AT_rich Low_complexity Low_complexity 1 73 0 5 1370 11099 186 250 10 chr12 102905946 102907808 -18349722 + Lx2 LINE L1 815 3495 -2382 5 1370 1178 140 11 0 chr12 102907808 102907987 -18349543 + B2_Mm2 SINE B2 1 181 -14 5 1370 11099 183 291 4 chr12 102907987 102908166 -18349364 + Lx2 LINE L1 3496 3829 -2048 5 1370 279 0 0 0 chr12 102908166 102908197 -18349333 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1370 11099 160 161 20 chr12 102908197 102911116 -18346414 + Lx2 LINE L1 3830 6997 -3 5 1370 285 118 0 0 chr12 102911196 102911247 -18346283 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1370 19709 160 48 11 chr12 102911248 102916026 -18341504 + Lx4B LINE L1 2064 7041 -17 5 1370 465 19 0 0 chr12 102916028 102916082 -18341448 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1370 180 0 0 0 chr12 102916082 102916101 -18341429 + (CG)n Simple_repeat Simple_repeat 2 21 0 5 1370 482 294 55 8 chr12 102916122 102916249 -18341281 + B3A SINE B2 28 160 -38 5 1370 627 229 61 0 chr12 102916923 102917054 -18340476 - B1_Mur2 SINE Alu -6 143 5 5 1370 33 43 0 0 chr12 102917059 102917106 -18340424 + AT_rich Low_complexity Low_complexity 1 47 0 5 1370 718 279 87 16 chr12 102917336 102917697 -18339833 - Lx7 LINE L1 -1501 5972 5587 5 1370 3058 162 109 27 chr12 102918204 102918843 -18338687 + RLTR17 LTR ERVK 1 692 0 5 1370 648 236 107 5 chr12 102919196 102919401 -18338129 - Lx7 LINE L1 -692 5611 5351 5 1370 560 193 17 17 chr12 102919429 102919608 -18337922 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 1370 216 0 0 0 chr12 102919608 102919632 -18337898 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1370 424 246 182 15 chr12 102919854 102920052 -18337478 + L1MA5A LINE L1 5614 5844 -453 5 1370 509 228 80 33 chr12 102920210 102920360 -18337170 + MT2A LTR ERVL 1 157 -376 5 1370 462 306 29 93 chr12 102920403 102920608 -18336922 + MT2A LTR ERVL 277 468 -133 5 1370 6059 121 32 48 chr12 102920926 102921735 -18335795 + L1VL4 LINE L1 3 843 -5459 5 1370 1204 61 0 0 chr12 102921735 102921882 -18335648 + B1_Mus2 SINE Alu 1 147 0 5 1370 18265 71 22 49 chr12 102921882 102922397 -18335133 + L1VL4 LINE L1 844 1293 -2266 5 1370 7397 82 25 12 chr12 102922397 102923471 -18334059 + Lx3_Mus LINE L1 5922 7009 0 5 1370 18265 66 21 49 chr12 102923471 102925792 -18331738 + L1VL4 LINE L1 1294 3556 -3 5 1370 25 31 0 0 chr12 102925792 102925824 -18331706 + AT_rich Low_complexity Low_complexity 1 32 0 5 1370 232 308 15 15 chr12 102925839 102925971 -18331559 + GA-rich Low_complexity Low_complexity 3 134 0 5 1370 314 247 21 0 chr12 102925840 102925937 -18331593 + (CAGAGA)n Simple_repeat Simple_repeat 4 102 0 5 1370 664 261 84 54 chr12 102926583 102926915 -18330615 - Lx7 LINE L1 -775 5368 5027 5 1370 210 235 24 12 chr12 102927042 102927124 -18330406 + (TTAAA)n Simple_repeat Simple_repeat 4 86 0 5 1370 24 32 0 0 chr12 102927128 102927159 -18330371 + AT_rich Low_complexity Low_complexity 1 31 0 5 1370 878 182 0 0 chr12 102927369 102927517 -18330013 - B1_Mur2 SINE Alu 0 149 2 5 1370 324 0 0 0 chr12 102927525 102927561 -18329969 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1370 269 333 60 46 chr12 102928378 102928529 -18329001 + MER5A DNA MER1_type 22 174 -15 5 1370 2939 70 18 8 chr12 102929054 102929455 -18328075 + L1_Mus1 LINE L1 6162 6566 -1 5 1370 304 192 79 40 chr12 102929701 102929777 -18327753 - PB1 SINE Alu -5 122 44 5 1370 32 0 0 0 chr12 102929777 102929809 -18327721 + AT_rich Low_complexity Low_complexity 1 32 0 5 1370 470 16 0 16 chr12 102929813 102929877 -18327653 - L1_Mus3 LINE L1 -11 6627 6565 5 1370 6248 83 35 9 chr12 102929998 102930915 -18326615 - MusHAL1 LINE L1 -862 1850 908 5 1370 999 122 18 6 chr12 102930915 102931080 -18326450 + L1_Mus4 LINE L1 6464 6630 -6 5 1370 24 0 0 0 chr12 102931844 102931868 -18325662 + AT_rich Low_complexity Low_complexity 1 24 0 5 1370 21 0 0 0 chr12 102932087 102932108 -18325422 + AT_rich Low_complexity Low_complexity 1 21 0 5 1370 1694 110 73 4 chr12 102932205 102932479 -18325051 - Lx2 LINE L1 0 6997 6705 5 1370 445 90 2 0 chr12 102932479 102932546 -18324984 - ORR1A3 LTR MaLR -5 324 256 5 1370 1222 282 128 20 chr12 102933341 102933867 -18323663 + Lx6 LINE L1 6506 7456 -4 5 1370 529 282 44 39 chr12 102933938 102934119 -18323411 + B3A SINE B2 1 182 -16 5 1370 232 282 228 25 chr12 102934229 102934716 -18322814 + L1M5 LINE L1 4776 5361 -785 5 1370 4808 106 25 6 chr12 102934746 102935468 -18322062 + L1VL4 LINE L1 190 925 -5377 5 1370 378 155 14 0 chr12 102935681 102935752 -18321778 + L1_Mur3 LINE L1 5044 5115 -765 5 1370 5376 106 23 7 chr12 102935748 102936573 -18320957 - L1_Mur2 LINE L1 -1280 4597 3760 5 1370 4539 120 143 19 chr12 102936574 102937464 -18320066 + L1_Mur2 LINE L1 4607 5606 -271 5 1370 4111 138 72 30 chr12 102937459 102938915 -18318615 + L1_Mur1 LINE L1 10 1819 -4067 5 1370 4833 107 8 3 chr12 102938905 102939636 -18317894 + L1_Mur1 LINE L1 2271 3005 -2881 5 1370 2581 156 4 67 chr12 102939636 102940132 -18317398 + MYSERV16_I-int LTR ERVK 456 920 -1406 5 1370 286 266 74 11 chr12 102940135 102940230 -18317300 + RMER4A LTR ERVK 308 408 -58 5 1370 1213 139 5 14 chr12 102940233 102940452 -18317078 + MYSERV16_I-int LTR ERVK 1026 1242 -1084 5 1370 6829 9 0 0 chr12 102940452 102941381 -18316149 - L1Md_T LINE L1 -237 6345 5417 5 1370 1947 5 0 0 chr12 102941381 102941603 -18315927 + L1Md_T LINE L1 6360 6581 -1 5 1370 210 71 0 0 chr12 102941606 102941634 -18315896 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1370 4906 121 46 1 chr12 102941637 102942445 -18315085 + MYSERV16_I-int LTR ERVK 1248 2091 -235 5 1370 778 295 104 26 chr12 102942990 102943624 -18313906 + L1MEf LINE L1 493 1157 -5043 5 1370 356 275 57 128 chr12 102943619 102944024 -18313506 + L1ME2z LINE L1 6046 6421 -23 5 1370 877 217 62 29 chr12 102944147 102944356 -18313174 + B3 SINE B2 1 216 0 5 1370 539 252 0 86 chr12 102944930 102945082 -18312448 - B1_Mur1 SINE Alu 0 149 11 5 1370 3460 111 31 39 chr12 102945092 102945637 -18311893 - Lx LINE L1 -6 6648 6108 5 1370 1314 189 139 35 chr12 102946859 102947205 -18310325 - MTD LTR MaLR -37 382 1 5 1370 695 109 34 0 chr12 102948816 102948935 -18308595 + Lx2 LINE L1 6875 6997 0 5 1370 235 262 214 0 chr12 102949019 102949103 -18308427 - L1MC LINE L1 -2192 5690 5589 5 1370 235 156 0 0 chr12 102949267 102949315 -18308215 + B3 SINE B2 2 49 -149 5 1370 1475 221 40 22 chr12 102949315 102949639 -18307891 + RMER1C Other Other 701 1030 -312 5 1370 5397 108 12 4 chr12 102949639 102951337 -18306193 + L1Md_F2 LINE L1 214 1883 -4000 5 1370 5215 55 0 0 chr12 102951339 102951973 -18305557 + L1Md_F2 LINE L1 4953 5586 -297 5 1370 8214 48 4 0 chr12 102951973 102952963 -18304567 + L1Md_F2 LINE L1 5587 6580 -2 5 1370 307 333 101 53 chr12 102953053 102953262 -18304268 + L1M5 LINE L1 5379 5597 -643 6 1370 1190 61 0 0 chr12 102953366 102953513 -18304017 + B1_Mus2 SINE Alu 1 147 0 6 1370 225 188 0 0 chr12 102953513 102953561 -18303969 + A-rich Low_complexity Low_complexity 1 48 0 6 1370 282 281 63 21 chr12 102953590 102953732 -18303798 + L1M5 LINE L1 5725 5872 -290 6 1370 310 330 58 0 chr12 102953743 102953846 -18303684 + PB1D10 SINE Alu 1 109 -8 6 1370 300 242 10 29 chr12 102954487 102954589 -18302941 - L1M5 LINE L1 -553 5620 5521 6 1370 189 0 0 0 chr12 102956990 102957011 -18300519 + (CAAG)n Simple_repeat Simple_repeat 1 21 0 6 1370 486 98 0 0 chr12 102957016 102957098 -18300432 + (CTCA)n Simple_repeat Simple_repeat 1 82 0 6 1370 483 235 51 128 chr12 102957497 102957692 -18299838 + B3 SINE B2 32 211 -5 6 1370 1388 221 46 8 chr12 102957782 102958233 -18299297 - Lx4B LINE L1 -1 6975 6503 6 1370 6462 139 6 35 chr12 102958232 102959329 -18298201 - L1_Mur2 LINE L1 -11 5866 4802 6 1370 2591 49 68 0 chr12 102959607 102959931 -18297599 - ORR1A1 LTR MaLR 0 346 1 6 1370 306 0 0 0 chr12 102960248 102960282 -18297248 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1370 22 0 0 0 chr12 102960284 102960306 -18297224 + AT_rich Low_complexity Low_complexity 1 22 0 6 1370 396 0 0 0 chr12 102960789 102960833 -18296697 + (TTA)n Simple_repeat Simple_repeat 2 45 0 6 1370 4160 50 2 2 chr12 102961740 102962246 -18295284 - L1Md_F2 LINE L1 0 6582 6077 6 1370 492 238 156 0 chr12 102963641 102963763 -18293767 + B1_Mur2 SINE Alu 1 141 -8 6 1370 434 351 57 5 chr12 102963768 102963960 -18293570 + LTR33C LTR ERVL 89 290 -339 6 1370 9808 82 25 10 chr12 102963992 102965341 -18292189 + Lx3A LINE L1 5587 6956 -25 6 1370 3401 195 19 96 chr12 102965343 102966300 -18291230 - ORR1A1-int LTR MaLR -777 1015 133 6 1370 199 261 7 35 chr12 102966323 102966466 -18291064 + GA-rich Low_complexity Low_complexity 3 141 0 6 1370 207 69 0 0 chr12 102967102 102967131 -18290399 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 6 1370 3953 157 24 21 chr12 102967132 102967837 -18289693 - Lx4B LINE L1 -12 7046 6340 6 1370 36996 69 8 1 chr12 102967837 102974549 -18282981 - L1Md_F2 LINE L1 0 6585 101 6 1370 975 253 13 23 chr12 102974555 102974855 -18282675 - L1Md_F2 LINE L1 -6125 516 220 6 1370 4613 136 31 10 chr12 102974857 102976063 -18281467 - Lx4B LINE L1 -704 6354 5115 6 1370 1043 113 0 0 chr12 102976063 102976240 -18281290 + L1_Mur2 LINE L1 3115 3291 -2586 6 1370 1381 142 24 0 chr12 102976238 102976450 -18281080 + L1_Mm LINE L1 5466 5682 -201 6 1370 708 131 8 23 chr12 102976450 102976583 -18280947 + Lx2 LINE L1 6864 6994 -3 6 1370 433 315 59 25 chr12 102976864 102977102 -18280428 - L2 LINE L2 -517 2902 2657 6 1370 273 57 0 0 chr12 102977333 102977368 -18280162 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1370 952 134 43 0 chr12 102978219 102978383 -18279147 - URR1A DNA MER1_type -19 207 37 6 1370 349 288 126 37 chr12 102978383 102978410 -18279120 + CYRA11_Mm Unknown Y-chromosome 190 397 -220 6 1370 558 322 103 33 chr12 102978894 102979321 -18278209 - MLT1C LTR MaLR 0 467 11 6 1370 226 353 0 23 chr12 102979514 102979601 -18277929 + LTR85a LTR Gypsy? 617 701 -1 6 1370 23 0 0 0 chr12 102980664 102980687 -18276843 + AT_rich Low_complexity Low_complexity 1 23 0 6 1370 798 89 0 0 chr12 102980907 102981019 -18276511 + (GA)n Simple_repeat Simple_repeat 1 112 0 6 1370 528 59 0 0 chr12 102981020 102981088 -18276442 + (GAAAA)n Simple_repeat Simple_repeat 1 68 0 6 1370 411 21 0 0 chr12 102981161 102981209 -18276321 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1370 236 30 30 0 chr12 102981209 102981242 -18276288 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1370 279 275 12 0 chr12 102981255 102981335 -18276195 - B3 SINE B2 -40 176 96 6 1370 198 91 0 0 chr12 102981715 102981748 -18275782 + (TTCTG)n Simple_repeat Simple_repeat 5 37 0 6 1370 1381 156 51 18 chr12 102981754 102982028 -18275502 + RLTR19A LTR ERVK 171 453 -43 6 1370 183 80 0 0 chr12 102982236 102982261 -18275269 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1370 186 133 0 0 chr12 102982310 102982340 -18275190 + (TTC)n Simple_repeat Simple_repeat 2 31 0 6 1370 183 42 0 0 chr12 102982721 102982745 -18274785 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1370 350 236 14 0 chr12 102982815 102982887 -18274643 + ID4 SINE ID 1 73 -10 6 1370 543 251 25 32 chr12 102983415 102983579 -18273951 + RSINE1 SINE B4 1 163 -2 6 1370 603 0 0 0 chr12 102983595 102983662 -18273868 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 1370 277 134 23 58 chr12 102984178 102984224 -18273306 + T-rich Low_complexity Low_complexity 42 88 0 6 1370 264 30 0 0 chr12 102984224 102984257 -18273273 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1370 277 134 23 58 chr12 102984257 102984297 -18273233 + T-rich Low_complexity Low_complexity 5 41 0 6 1370 531 322 46 0 chr12 102984591 102984743 -18272787 - RSINE1 SINE B4 -4 161 3 6 1370 1592 265 58 20 chr12 102985030 102985480 -18272050 + Lx8 LINE L1 6986 7452 -21 6 1370 914 306 20 29 chr12 102986299 102986646 -18270884 + MER121 Unknown Unknown 17 360 -52 6 1370 590 257 22 0 chr12 102987130 102987266 -18270264 + B1_Mur1 SINE Alu 11 149 0 6 1370 200 358 31 31 chr12 102989253 102989351 -18268179 + L2b LINE L2 3079 3176 -199 6 1370 205 343 83 35 chr12 102989659 102989804 -18267726 - MIRb SINE MIR -92 176 25 6 1370 247 338 0 0 chr12 102990633 102990710 -18266820 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1370 207 338 155 0 chr12 102991617 102991759 -18265771 - MIRb SINE MIR -14 254 91 6 1370 180 158 0 0 chr12 102992574 102992612 -18264918 + (CATG)n Simple_repeat Simple_repeat 1 38 0 6 1370 2176 164 27 10 chr12 102993193 102993599 -18263931 + MTC LTR MaLR 1 413 -8 6 1370 380 333 76 14 chr12 102993588 102993798 -18263732 + MLT1D LTR MaLR 274 496 -9 6 1370 209 265 0 0 chr12 102993812 102993861 -18263669 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1370 706 246 15 103 chr12 102993863 102993947 -18263583 - B4A SINE B4 0 292 226 6 1370 578 230 35 43 chr12 102993947 102994088 -18263442 - B1_Mur1 SINE Alu -9 140 1 6 1370 706 246 15 103 chr12 102994088 102994207 -18263323 - B4A SINE B4 -67 225 107 6 1370 238 261 171 0 chr12 102994540 102994651 -18262879 + MER3 DNA MER1_type 36 165 -44 6 1370 620 194 0 7 chr12 102995013 102995148 -18262382 + (TA)n Simple_repeat Simple_repeat 1 134 0 6 1370 820 171 23 189 chr12 102996010 102996269 -18261261 + B3 SINE B2 1 216 0 6 1370 756 287 23 8 chr12 102999133 102999393 -18258137 + MER33 DNA MER1_type 9 272 -52 6 1370 330 328 48 87 chr12 103000976 103001183 -18256347 - MIRb SINE MIR -10 258 60 1 1370 218 269 147 9 chr12 103001939 103002048 -18255482 - MIR SINE MIR -121 141 18 2 1370 197 180 176 20 chr12 103002858 103002909 -18254621 - L2b LINE L2 -1 3374 3316 3 1370 206 121 0 0 chr12 103003527 103003560 -18253970 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1370 890 212 187 48 chr12 103003665 103003997 -18253533 + MTE2b LTR MaLR 1 378 -1 5 1370 629 278 53 0 chr12 103005231 103005418 -18252112 + B4A SINE B4 1 197 -95 6 1370 289 344 11 8 chr12 103005433 103005572 -18251958 + MIR SINE MIR 44 182 -80 7 1370 223 329 153 12 chr12 103008379 103008542 -18248988 + MIR3 SINE MIR 9 194 -14 8 1370 246 32 0 0 chr12 103008825 103008856 -18248674 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1370 4642 54 2 0 chr12 103010014 103010584 -18246946 + L1Md_F2 LINE L1 6010 6580 -2 1 1370 514 283 23 91 chr12 103011898 103012073 -18245457 + RSINE1 SINE B4 3 165 0 1 1370 378 204 0 0 chr12 103012073 103012161 -18245369 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1370 25 95 0 0 chr12 103012186 103012260 -18245270 + AT_rich Low_complexity Low_complexity 1 74 0 1 1370 329 225 0 53 chr12 103012738 103012813 -18244717 - HAL1-3A_ME LINE L1 -804 2054 1984 1 1370 644 189 0 16 chr12 103012824 103013007 -18244523 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1370 822 171 0 0 chr12 103013027 103013203 -18244327 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1370 198 0 0 0 chr12 103013203 103013225 -18244305 + (TCTG)n Simple_repeat Simple_repeat 3 24 0 1 1370 817 241 10 39 chr12 103014340 103014543 -18242987 + B3A SINE B2 2 198 0 1 1370 486 302 0 26 chr12 103014563 103014716 -18242814 + B1F SINE Alu 1 149 0 1 1370 485 306 21 43 chr12 103014746 103014886 -18242644 + RSINE1 SINE B4 1 137 -28 1 1370 351 0 0 0 chr12 103014909 103014948 -18242582 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1370 913 28 32 44 chr12 103015411 103015754 -18241776 + (CA)n Simple_repeat Simple_repeat 1 338 0 2 1370 342 197 244 22 chr12 103017217 103017352 -18240178 - MER5A1 DNA MER1_type -1 165 1 2 1370 292 244 58 58 chr12 103017619 103017706 -18239824 - PB1D9 SINE Alu -15 105 19 2 1370 736 265 22 56 chr12 103017714 103017946 -18239584 + MER2 DNA MER2_type 113 336 -9 2 1370 478 293 22 116 chr12 103017973 103018205 -18239325 + B3 SINE B2 7 216 0 2 1370 21 0 0 0 chr12 103018207 103018228 -18239302 + AT_rich Low_complexity Low_complexity 1 21 0 2 1370 543 218 0 9 chr12 103018625 103018736 -18238794 - PB1D9 SINE Alu -8 112 3 2 1370 342 0 0 0 chr12 103018779 103018817 -18238713 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1370 420 279 143 38 chr12 103018818 103019027 -18238503 - MLT1A LTR MaLR -132 242 12 2 1370 1065 276 89 4 chr12 103019551 103019820 -18237710 + B4 SINE B4 1 292 0 3 1370 639 294 112 22 chr12 103020100 103020413 -18237117 + L1MB3 LINE L1 5835 6175 -8 3 1370 2826 121 29 20 chr12 103021530 103021978 -18235552 + Lx LINE L1 6203 6654 0 3 1370 190 95 48 0 chr12 103022013 103022055 -18235475 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1370 1615 11 11 31 chr12 103022070 103022261 -18235269 + B2_Mm1a SINE B2 2 188 -5 3 1370 273 212 59 0 chr12 103022342 103022460 -18235070 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 1371 6806 90 60 13 chr12 103022675 103023662 -18233868 + RLTR13D4 LTR ERVK 1 1033 0 3 1371 1244 105 17 0 chr12 103023915 103024087 -18233443 + B2_Mm2 SINE B2 2 176 -19 3 1371 1098 232 97 4 chr12 103024141 103024388 -18233142 + B4A SINE B4 5 274 -18 3 1371 365 86 17 0 chr12 103024407 103024465 -18233065 + (CATA)n Simple_repeat Simple_repeat 4 62 0 3 1371 190 321 12 47 chr12 103024820 103024905 -18232625 - L2b LINE L2 0 3375 3294 4 1371 354 263 106 31 chr12 103024939 103025100 -18232430 + L1M5 LINE L1 2779 2951 -3195 4 1371 1040 134 181 5 chr12 103025269 103025457 -18232073 - URR1B DNA MER1_type 0 225 5 4 1371 1891 167 15 69 chr12 103025783 103025891 -18231639 + ORR1D1 LTR MaLR 2 101 -273 4 1371 1130 66 0 0 chr12 103025891 103026027 -18231503 + B1_Mus1 SINE Alu 2 137 -11 4 1371 1082 99 6 0 chr12 103026027 103026189 -18231341 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 4 1371 1891 167 15 69 chr12 103026189 103026472 -18231058 + ORR1D1 LTR MaLR 102 372 -2 4 1371 21 0 0 0 chr12 103026660 103026681 -18230849 + AT_rich Low_complexity Low_complexity 1 21 0 4 1371 761 263 58 0 chr12 103026758 103026929 -18230601 + B3A SINE B2 2 182 -16 4 1371 486 318 23 136 chr12 103026985 103027168 -18230362 + L1M5 LINE L1 3125 3278 -2868 4 1371 536 256 115 33 chr12 103027168 103027350 -18230180 + B3A SINE B2 2 198 0 4 1371 486 318 23 136 chr12 103027350 103027512 -18230018 + L1M5 LINE L1 3279 3431 -2715 4 1371 488 288 20 7 chr12 103027530 103027677 -18229853 + B1F SINE Alu 1 149 0 4 1371 279 303 83 93 chr12 103027685 103028071 -18229459 + L1M5 LINE L1 3438 3819 -2327 4 1371 614 275 126 41 chr12 103028104 103028373 -18229157 + B4A SINE B4 1 292 0 5 1371 1749 195 52 24 chr12 103028491 103029032 -18228498 + RLTR31B_Mm LTR ERVK 1 584 0 5 1371 474 18 0 0 chr12 103029104 103029159 -18228371 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1371 307 246 33 0 chr12 103029160 103029221 -18228309 - ID2 SINE ID -10 73 11 5 1371 687 284 71 42 chr12 103029274 103029557 -18227973 - B4A SINE B4 0 292 2 5 1371 354 333 42 57 chr12 103029592 103029926 -18227604 + L1M5 LINE L1 4022 4350 -1796 4 1371 270 81 0 0 chr12 103029948 103029985 -18227545 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1371 275 178 0 0 chr12 103030007 103030052 -18227478 + L1M5 LINE L1 5456 5500 -740 5 1371 235 241 0 49 chr12 103030052 103030113 -18227417 + MT2B2 LTR ERVL 230 287 -297 5 1371 1081 45 0 7 chr12 103030087 103030222 -18227308 + B1_Mus1 SINE Alu 6 139 -9 5 1371 1086 108 7 0 chr12 103030859 103031007 -18226523 + B1_Mur2 SINE Alu 1 149 0 5 1371 988 269 58 69 chr12 103032258 103032606 -18224924 + MLT1B LTR MaLR 15 358 -32 6 1371 393 22 0 0 chr12 103032611 103032657 -18224873 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1371 625 242 197 11 chr12 103034277 103034465 -18223065 + ID_B1 SINE B4 2 224 0 6 1371 197 364 104 15 chr12 103034904 103035038 -18222492 - MIR3 SINE MIR -25 183 38 6 1371 2535 146 23 3 chr12 103035069 103035455 -18222075 + ORR1B1 LTR MaLR 1 394 0 6 1371 486 0 0 0 chr12 103036280 103036334 -18221196 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1371 686 102 19 0 chr12 103037382 103037490 -18220040 + (GGGAGA)n Simple_repeat Simple_repeat 5 114 0 6 1371 272 27 0 26 chr12 103037775 103037813 -18219717 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 6 1371 187 226 57 0 chr12 103038952 103039005 -18218525 + L3 LINE CR1 924 979 -3510 6 1371 735 261 50 65 chr12 103039179 103039380 -18218150 - B4A SINE B4 -91 201 4 6 1371 405 346 127 47 chr12 103039386 103039686 -18217844 - Charlie4a DNA MER1_type -181 327 4 7 1371 190 349 47 0 chr12 103039694 103039800 -18217730 - MIRc SINE MIR -113 155 45 7 1371 182 245 82 0 chr12 103039978 103040027 -18217503 + MER5A DNA MER1_type 3 55 -134 7 1371 255 331 86 8 chr12 103040299 103040427 -18217103 - MIRb SINE MIR -1 261 124 7 1371 1105 82 0 0 chr12 103040430 103040577 -18216953 + B1_Mus1 SINE Alu 2 148 0 7 1371 202 333 80 11 chr12 103041175 103041263 -18216267 + L4 LINE RTE 933 1026 -1003 7 1371 909 280 54 43 chr12 103043006 103043067 -18214463 - B4A SINE B4 -8 284 229 7 1371 396 303 18 49 chr12 103043067 103043230 -18214300 - RSINE1 SINE B4 -5 160 3 7 1371 909 280 54 43 chr12 103043230 103043444 -18214086 - B4A SINE B4 -64 228 6 7 1371 3217 60 5 16 chr12 103043534 103043959 -18213571 + L1Md_F2 LINE L1 6156 6575 -7 7 1371 1273 142 53 65 chr12 103044052 103044390 -18213140 + RMER17C LTR ERVK 77 410 0 7 1371 336 48 0 0 chr12 103044425 103044467 -18213063 + (TTG)n Simple_repeat Simple_repeat 1 42 0 8 1371 893 139 0 0 chr12 103044516 103044645 -18212885 - B1_Mus1 SINE Alu -18 130 2 8 1371 1304 106 27 0 chr12 103045268 103045456 -18212074 + B2_Mm2 SINE B2 3 195 0 8 1371 571 188 14 21 chr12 103046174 103046315 -18211215 + CT-rich Low_complexity Low_complexity 1 140 0 8 1371 387 0 0 0 chr12 103046322 103046365 -18211165 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1371 443 281 82 72 chr12 103046917 103047124 -18210406 + Charlie7a DNA MER1_type 64 272 0 8 1371 923 122 23 0 chr12 103047535 103047707 -18209823 + (TGGA)n Simple_repeat Simple_repeat 2 177 0 8 1371 403 324 144 25 chr12 103049813 103049940 -18207590 + MLT1E3 LTR MaLR 306 441 -183 8 1371 306 0 0 0 chr12 103049940 103049974 -18207556 + (TC)n Simple_repeat Simple_repeat 2 35 0 8 1371 403 324 144 25 chr12 103049974 103050131 -18207399 + MLT1E3 LTR MaLR 442 624 0 8 1371 310 262 57 45 chr12 103051008 103051096 -18206434 - PB1D10 SINE Alu 0 117 29 8 1371 238 310 69 0 chr12 103051505 103051592 -18205938 + MIR SINE MIR 108 200 -62 9 1371 1364 140 4 67 chr12 103051974 103052212 -18205318 - URR1B DNA MER1_type 0 225 3 9 1371 245 318 92 33 chr12 103052512 103052665 -18204865 + MIR3 SINE MIR 19 180 -28 9 1371 400 304 0 10 chr12 103053623 103053726 -18203804 - B4A SINE B4 -4 288 187 9 1371 435 296 86 43 chr12 103053775 103054039 -18203491 + L1MB3 LINE L1 5479 5780 -409 9 1371 347 0 0 23 chr12 103054053 103054097 -18203433 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1371 361 377 9 9 chr12 103054150 103054257 -18203273 + PB1 SINE Alu 1 107 -20 9 1371 217 284 42 56 chr12 103054225 103054296 -18203234 + RSINE1 SINE B4 58 127 -38 9 1371 307 246 148 47 chr12 103054405 103054554 -18202976 + L1MB3 LINE L1 5875 6038 -145 9 1371 647 226 23 38 chr12 103054609 103054742 -18202788 - B1F SINE Alu 0 149 19 9 1371 602 208 83 8 chr12 103054774 103054895 -18202635 - ID_B1 SINE B4 -1 223 94 9 1371 450 0 0 0 chr12 103056105 103056155 -18201375 + (GGA)n Simple_repeat Simple_repeat 2 51 0 1 1371 204 125 0 0 chr12 103057613 103057645 -18199885 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1371 864 120 266 12 chr12 103058666 103058835 -18198695 + B3 SINE B2 1 212 -4 1 1371 2606 91 52 0 chr12 103058947 103059333 -18198197 + Lx2A1 LINE L1 6592 6997 -11 1 1371 315 102 0 0 chr12 103059512 103059561 -18197969 - ID4 SINE ID -33 50 2 1 1371 441 266 48 0 chr12 103060189 103060313 -18197217 + B1F SINE Alu 5 134 -15 1 1371 189 0 0 0 chr12 103060335 103060356 -18197174 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 1371 337 301 136 29 chr12 103060965 103061105 -18196425 + RSINE1 SINE B4 11 165 0 1 1371 544 281 199 30 chr12 103061527 103061953 -18195577 + RMER20B LTR ERVK 109 606 -21 1 1371 269 220 71 29 chr12 103062005 103062095 -18195435 - B2_Mm2 SINE B2 -121 95 2 1 1371 769 202 59 6 chr12 103062306 103062475 -18195055 + B3 SINE B2 33 210 -6 1 1371 441 116 0 0 chr12 103062774 103062843 -18194687 + (CTCA)n Simple_repeat Simple_repeat 1 69 0 1 1371 198 325 75 25 chr12 103062870 103062990 -18194540 + MIRb SINE MIR 27 152 -116 1 1371 306 0 0 0 chr12 103063058 103063092 -18194438 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1 1371 894 196 68 11 chr12 103063092 103063283 -18194247 - B3 SINE B2 -14 202 1 1 1371 329 215 11 0 chr12 103063512 103063605 -18193925 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1371 686 214 3 3 chr12 103063637 103063982 -18193548 + (TG)n Simple_repeat Simple_repeat 1 345 0 1 1371 739 207 14 0 chr12 103064434 103064579 -18192951 + B1_Mur3 SINE Alu 2 148 -1 1 1371 717 250 128 4 chr12 103064595 103064844 -18192686 + B4A SINE B4 1 280 -12 1 1371 243 0 0 0 chr12 103064885 103064912 -18192618 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1371 434 246 7 55 chr12 103065694 103065840 -18191690 + B1F SINE Alu 3 141 -8 1 1371 520 310 96 18 chr12 103065866 103066086 -18191444 + B4A SINE B4 2 238 -54 1 1371 529 279 28 14 chr12 103066197 103066320 -18191210 + B1_Mur2 SINE Alu 6 131 -18 1 1371 351 44 0 0 chr12 103066320 103066365 -18191165 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 1 1371 529 279 28 14 chr12 103066365 103066383 -18191147 + B1_Mur2 SINE Alu 132 147 -2 1 1371 402 291 79 0 chr12 103066406 103066533 -18190997 + B1F1 SINE Alu 1 137 -12 1 1371 234 270 130 39 chr12 103066727 103066881 -18190649 - LTR33A LTR ERVL -71 449 282 1 1371 629 241 31 12 chr12 103067270 103067430 -18190100 - RSINE1 SINE B4 0 165 3 1 1371 408 179 13 13 chr12 103067455 103067534 -18189996 + B1F SINE Alu 42 120 -29 1 1371 316 261 93 43 chr12 103067607 103067747 -18189783 - RSINE1 SINE B4 -17 148 2 1 1371 274 263 236 22 chr12 103067802 103068031 -18189499 - B4A SINE B4 -12 280 3 1 1371 494 203 144 0 chr12 103069173 103069326 -18188204 - L1M4b LINE L1 -5835 1499 1325 1 1371 567 260 7 30 chr12 103070188 103070323 -18187207 + B3A SINE B2 16 147 -51 1 1371 267 31 0 0 chr12 103070336 103070368 -18187162 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1371 246 260 65 0 chr12 103073855 103073932 -18183598 + Tigger5 DNA MER2_type 2325 2406 0 1 1371 600 245 14 28 chr12 103074681 103074824 -18182706 - B1F SINE Alu -8 141 1 1 1371 861 236 67 5 chr12 103074908 103075195 -18182335 + L1MD2 LINE L1 5803 6109 -55 1 1371 291 152 76 0 chr12 103076086 103076152 -18181378 - ID_B1 SINE B4 -3 221 151 1 1371 514 241 43 110 chr12 103076355 103076518 -18181012 + RSINE1 SINE B4 3 154 -11 1 1371 1468 163 211 82 chr12 103076739 103077189 -18180341 + RLTR18B LTR ERVK 5 512 0 1 1371 1112 83 14 0 chr12 103077696 103077840 -18179690 - B1_Mm SINE Alu 0 147 2 1 1371 254 179 18 0 chr12 103080317 103080373 -18177157 + GA-rich Low_complexity Low_complexity 4 60 0 1 1371 2043 40 16 0 chr12 103080397 103080644 -18176886 + L1Md_A LINE L1 6332 6582 0 1 1371 2711 214 20 6 chr12 103080644 103081336 -18176194 + Lx4B LINE L1 6276 6993 -7 1 1371 29 47 0 0 chr12 103081350 103081393 -18176137 + AT_rich Low_complexity Low_complexity 1 43 0 1 1371 234 0 0 0 chr12 103081407 103081433 -18176097 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1371 1864 245 65 52 chr12 103081433 103082015 -18175515 + MT-int LTR MaLR 288 877 -221 1 1371 216 86 0 0 chr12 103082036 103082071 -18175459 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1371 299 210 0 31 chr12 103083754 103083818 -18173712 + ID4 SINE ID 9 70 -13 1 1371 22 0 0 0 chr12 103084412 103084434 -18173096 + AT_rich Low_complexity Low_complexity 1 22 0 1 1371 382 291 19 58 chr12 103085781 103085846 -18171684 - L1M4 LINE L1 -1037 5109 5048 1 1371 3541 18 2 0 chr12 103085846 103086241 -18171289 + MTA_Mm LTR MaLR 1 396 0 1 1371 9376 29 3 2 chr12 103086241 103087338 -18170192 + MTA_Mm-int LTR MaLR 1 1098 0 1 1371 3541 18 2 0 chr12 103087338 103087733 -18169797 + MTA_Mm LTR MaLR 1 396 0 1 1371 382 274 0 41 chr12 103087733 103087835 -18169695 - L1M4 LINE L1 -1099 5047 4950 1 1371 314 261 33 33 chr12 103088671 103088762 -18168768 - B4A SINE B4 -163 129 39 1 1371 309 82 0 0 chr12 103088852 103088901 -18168629 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1371 34 0 0 0 chr12 103089004 103089038 -18168492 + AT_rich Low_complexity Low_complexity 1 34 0 1 1371 463 255 140 18 chr12 103089049 103089213 -18168317 + B3 SINE B2 30 213 -3 1 1371 481 192 130 10 chr12 103089256 103089356 -18168174 - B3 SINE B2 -104 112 1 1 1371 303 93 0 0 chr12 103089357 103089400 -18168130 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1371 288 256 21 75 chr12 103089749 103089842 -18167688 + RSINE1 SINE B4 45 132 -33 1 1371 508 271 8 0 chr12 103089920 103090038 -18167492 + PB1 SINE Alu 1 119 -8 1 1371 354 98 0 0 chr12 103090959 103091010 -18166520 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1371 1321 80 11 0 chr12 103091010 103091185 -18166345 - B2_Mm1a SINE B2 -15 178 2 1 1371 405 0 0 0 chr12 103091186 103091231 -18166299 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1 1371 447 91 319 26 chr12 103091232 103091345 -18166185 - B2_Mm2 SINE B2 -3 192 47 1 1371 1102 144 0 0 chr12 103091380 103091553 -18165977 - B2_Mm2 SINE B2 -21 174 2 1 1371 266 267 92 37 chr12 103091837 103091855 -18165675 - B3A SINE B2 -16 182 165 1 1371 1451 208 131 11 chr12 103091855 103092229 -18165301 - MTD LTR MaLR 0 419 1 1 1371 266 267 92 37 chr12 103092229 103092319 -18165211 - B3A SINE B2 -34 164 69 1 1371 417 210 0 0 chr12 103092353 103092434 -18165096 - B3A SINE B2 -117 81 1 1 1371 21 0 0 0 chr12 103092457 103092478 -18165052 + AT_rich Low_complexity Low_complexity 1 21 0 1 1371 531 45 0 0 chr12 103092538 103092604 -18164926 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1371 296 333 25 37 chr12 103092604 103092766 -18164764 - B4A SINE B4 -23 269 110 1 1371 852 276 14 9 chr12 103093067 103093290 -18164240 - ID_B1 SINE B4 0 224 1 1 1371 631 289 151 19 chr12 103093664 103093922 -18163608 - B4A SINE B4 0 292 1 1 1371 1380 85 26 5 chr12 103094337 103094526 -18163004 + B2_Mm2 SINE B2 1 193 -2 1 1371 228 346 69 44 chr12 103094671 103094831 -18162699 - RMER30 DNA MER1_type -34 168 5 1 1371 230 232 0 0 chr12 103094690 103094746 -18162784 + Charlie12 DNA MER1_type 53 108 -2765 1 1371 309 209 55 6 chr12 103095066 103095230 -18162300 + (CA)n Simple_repeat Simple_repeat 2 173 0 1 1371 495 326 81 18 chr12 103095588 103095872 -18161658 - Lx8 LINE L1 -118 7355 7054 1 1371 222 37 0 0 chr12 103096833 103096860 -18160670 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1371 1210 48 0 0 chr12 103101097 103101243 -18156287 + B1_Mm SINE Alu 2 147 0 1 1371 1677 31 0 0 chr12 103101681 103101873 -18155657 - B2_Mm1a SINE B2 0 193 2 1 1371 180 0 0 0 chr12 103102016 103102036 -18155494 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1371 1189 49 0 7 chr12 103102036 103102180 -18155350 - B1_Mm SINE Alu 0 147 5 1 1371 6937 124 29 27 chr12 103102270 103103440 -18154090 - Lx2B LINE L1 -333 5544 4373 1 1371 6857 166 63 16 chr12 103103445 103104721 -18152809 + Lx2B LINE L1 5587 6921 -79 1 1371 233 140 58 39 chr12 103104797 103104849 -18152681 + PB1 SINE Alu 75 127 0 1 1371 237 286 16 0 chr12 103104911 103104974 -18152556 - L1M5 LINE L1 -1152 4994 4931 1 1371 478 229 32 24 chr12 103105003 103105128 -18152402 - B1_Mur1 SINE Alu 0 149 24 1 1371 280 111 0 36 chr12 103105571 103105627 -18151903 + (GGGAA)n Simple_repeat Simple_repeat 3 56 0 1 1371 1157 34 6 33 chr12 103105628 103105809 -18151721 + (GGGGA)n Simple_repeat Simple_repeat 3 178 0 1 1371 504 0 0 0 chr12 103105812 103105868 -18151662 + (GGAAA)n Simple_repeat Simple_repeat 1 56 0 1 1371 266 208 24 61 chr12 103106371 103106453 -18151077 + MLT2C1 LTR ERVL 428 506 -57 1 1371 583 33 10 71 chr12 103106649 103106748 -18150782 + L1_Mus1 LINE L1 6475 6567 0 1 1371 275 240 39 26 chr12 103106812 103106889 -18150641 - ID4_ SINE ID -4 79 2 1 1371 25 51 0 0 chr12 103107034 103107073 -18150457 + AT_rich Low_complexity Low_complexity 1 39 0 1 1371 913 66 28 35 chr12 103107169 103107311 -18150219 + B2_Mm2 SINE B2 48 188 -7 1 1371 783 216 0 26 chr12 103107321 103107473 -18150057 + B1_Mur2 SINE Alu 2 149 0 1 1371 1226 48 0 0 chr12 103107992 103108139 -18149391 + B1_Mus2 SINE Alu 1 147 0 1 1371 315 0 0 0 chr12 103108153 103108188 -18149342 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1 1371 398 269 19 19 chr12 103108813 103108919 -18148611 + PB1D7 SINE Alu 15 120 0 1 1371 3003 40 2 20 chr12 103109076 103109372 -18148158 + MTA_Mm LTR MaLR 1 297 -99 1 1371 2357 95 62 3 chr12 103109372 103109709 -18147821 + IAPEY2_LTR LTR ERVK 1 357 0 1 1371 3003 40 2 20 chr12 103109709 103109815 -18147715 + MTA_Mm LTR MaLR 298 396 0 1 1371 372 246 34 34 chr12 103110383 103110501 -18147029 - PB1D9 SINE Alu -1 119 2 1 1371 632 200 46 0 chr12 103110945 103111075 -18146455 - B1_Mur2 SINE Alu -7 142 7 1 1371 400 274 19 9 chr12 103111149 103111256 -18146274 - RSINE1 SINE B4 -57 108 1 2 1371 226 296 0 14 chr12 103111901 103111973 -18145557 - L1MB3 LINE L1 -50 6133 6063 2 1371 1282 114 11 0 chr12 103112210 103112385 -18145145 + B2_Mm1t SINE B2 3 179 -14 2 1371 350 83 364 18 chr12 103112412 103112522 -18145008 + B2_Mm2 SINE B2 47 194 -1 2 1371 1224 230 91 19 chr12 103112831 103113175 -18144355 - MTE2b LTR MaLR -8 351 1 2 1371 27 0 0 0 chr12 103113196 103113223 -18144307 + AT_rich Low_complexity Low_complexity 1 27 0 2 1371 525 219 138 15 chr12 103113223 103113353 -18144177 - B1_Mur1 SINE Alu 0 149 4 2 1371 222 37 0 0 chr12 103113780 103113807 -18143723 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1371 410 152 283 0 chr12 103114670 103114769 -18142761 + B3A SINE B2 2 128 -70 2 1371 366 250 73 46 chr12 103115088 103115197 -18142333 + B1F2 SINE Alu 25 136 -13 2 1371 214 254 80 53 chr12 103115583 103115658 -18141872 + B1F1 SINE Alu 73 149 0 2 1371 63 84 0 0 chr12 103116498 103116652 -18140878 + AT_rich Low_complexity Low_complexity 1 154 0 2 1371 21 0 0 0 chr12 103117201 103117222 -18140308 + AT_rich Low_complexity Low_complexity 1 21 0 2 1371 267 264 0 44 chr12 103117409 103117434 -18140096 + L1MC3 LINE L1 7681 7702 -83 2 1371 1034 109 0 0 chr12 103117434 103117572 -18139958 + B1_Mur4 SINE Alu 3 140 -10 2 1371 267 264 0 44 chr12 103117572 103117637 -18139893 + L1MC3 LINE L1 7703 7767 -18 2 1371 265 271 48 137 chr12 103117663 103117787 -18139743 + PB1D9 SINE Alu 1 113 -7 2 1371 335 252 0 40 chr12 103117831 103117909 -18139621 + ID4 SINE ID 9 83 -69 2 1371 3575 127 48 29 chr12 103117909 103118495 -18139035 + Lx3B LINE L1 6373 6969 -4 2 1371 307 313 8 42 chr12 103118495 103118536 -18138994 + BC1_Mm scRNA scRNA 84 124 -28 2 1371 2102 295 62 21 chr12 103118679 103119487 -18138043 + Lx9 LINE L1 6290 7130 -514 2 1371 276 213 66 0 chr12 103119985 103120046 -18137484 - ID_B1 SINE B4 -76 148 84 2 1371 565 293 45 0 chr12 103120689 103120822 -18136708 + RSINE1 SINE B4 17 155 -10 2 1371 23 78 0 0 chr12 103124538 103124589 -18132941 + AT_rich Low_complexity Low_complexity 1 51 0 2 1371 629 236 6 63 chr12 103126049 103126207 -18131323 + B1F SINE Alu 1 149 0 2 1371 674 241 114 0 chr12 103126249 103126407 -18131123 + B3 SINE B2 39 214 -2 2 1371 32 43 0 0 chr12 103127013 103127059 -18130471 + AT_rich Low_complexity Low_complexity 1 46 0 2 1371 1827 16 0 0 chr12 103127170 103127361 -18130169 - B2_Mm1t SINE B2 -2 191 1 2 1371 180 179 0 0 chr12 103128181 103128200 -18129330 + A-rich Low_complexity Low_complexity 1 19 0 2 1371 510 235 5 199 chr12 103128200 103128323 -18129207 + B1_Mur4 SINE Alu 1 97 -53 2 1371 1250 75 0 0 chr12 103128323 103128470 -18129060 - B1_Mus2 SINE Alu 0 147 1 2 1371 510 235 5 199 chr12 103128470 103128532 -18128998 + B1_Mur4 SINE Alu 98 150 0 2 1371 180 179 0 0 chr12 103128532 103128568 -18128962 + A-rich Low_complexity Low_complexity 20 55 0 2 1371 288 268 44 44 chr12 103128611 103128701 -18128829 + RSINE1 SINE B4 3 92 -73 2 1371 324 127 0 0 chr12 103128716 103128771 -18128759 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1371 592 276 50 77 chr12 103130117 103130415 -18127115 - B4A SINE B4 -2 290 1 2 1371 1107 58 29 0 chr12 103130635 103130772 -18126758 + B1_Mm SINE Alu 1 141 -6 2 1371 234 0 0 0 chr12 103130774 103130800 -18126730 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 1371 311 0 26 0 chr12 103132201 103132240 -18125290 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1371 628 282 0 20 chr12 103132970 103133122 -18124408 - B1F1 SINE Alu 0 149 1 2 1371 908 171 13 40 chr12 103134287 103134439 -18123091 + B1_Mur2 SINE Alu 2 149 0 2 1371 614 245 154 36 chr12 103134472 103134667 -18122863 + ID_B1 SINE B4 3 220 -4 2 1371 505 291 73 22 chr12 103134764 103134910 -18122620 + B3A SINE B2 2 159 -39 2 1371 390 21 0 0 chr12 103134910 103134957 -18122573 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1371 505 291 73 22 chr12 103134957 103134989 -18122541 + B3A SINE B2 160 189 -9 2 1371 1023 221 88 4 chr12 103135022 103135295 -18122235 - L1MA6 LINE L1 -4 6296 6001 2 1371 465 50 0 0 chr12 103135615 103135675 -18121855 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1371 212 247 154 64 chr12 103136030 103136108 -18121422 - PB1D10 SINE Alu 0 117 33 2 1371 351 0 0 0 chr12 103136175 103136214 -18121316 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1371 353 95 16 0 chr12 103136731 103136794 -18120736 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2 1371 21 36 0 0 chr12 103136925 103136953 -18120577 + AT_rich Low_complexity Low_complexity 1 28 0 2 1371 1340 108 11 0 chr12 103137402 103137578 -18119952 + B2_Mm1t SINE B2 2 179 -14 2 1371 341 100 356 20 chr12 103137644 103137745 -18119785 + B2_Mm2 SINE B2 47 181 -14 2 1371 308 346 18 36 chr12 103138381 103138492 -18119038 + ID_B1 SINE B4 69 177 -47 2 1371 483 302 17 0 chr12 103138402 103138521 -18119009 + B1F1 SINE Alu 9 129 -20 2 1371 791 26 8 41 chr12 103138521 103138642 -18118888 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 2 1371 1089 99 7 0 chr12 103138720 103138871 -18118659 + B2_Mm1t SINE B2 2 153 -40 2 1371 181 0 69 0 chr12 103138873 103138902 -18118628 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 2 1371 1248 61 0 0 chr12 103138916 103139064 -18118466 + B1_Mus1 SINE Alu 1 148 0 2 1371 594 234 234 23 chr12 103139074 103139245 -18118285 + ID_B1 SINE B4 2 208 -16 2 1371 286 276 79 0 chr12 103139268 103139344 -18118186 + ID4_ SINE ID 2 83 0 2 1371 28 0 0 0 chr12 103139400 103139428 -18118102 + AT_rich Low_complexity Low_complexity 1 28 0 2 1371 347 266 0 71 chr12 103139586 103139671 -18117859 - ID4_ SINE ID -3 80 2 2 1371 293 220 0 0 chr12 103140120 103140170 -18117360 + ID4_ SINE ID 34 83 0 2 1371 21 36 0 0 chr12 103140221 103140249 -18117281 + AT_rich Low_complexity Low_complexity 1 28 0 2 1371 23 0 0 0 chr12 103140360 103140383 -18117147 + AT_rich Low_complexity Low_complexity 1 23 0 2 1371 282 281 85 0 chr12 103140727 103140809 -18116721 + Looper DNA PiggyBac 1122 1210 -348 2 1371 584 215 19 65 chr12 103141246 103141400 -18116130 + B1_Mur3 SINE Alu 2 148 -1 2 1371 528 258 119 62 chr12 103141639 103141899 -18115631 + B4 SINE B4 2 276 -16 2 1371 359 317 155 20 chr12 103142659 103142955 -18114575 - L3b LINE CR1 -144 338 3 2 1371 376 248 58 92 chr12 103143143 103143167 -18114363 + PB1D10 SINE Alu 1 21 -96 2 1371 1992 145 116 6 chr12 103143167 103143513 -18114017 + ORR1C2 LTR MaLR 1 384 0 2 1371 376 248 58 92 chr12 103143513 103143608 -18113922 + PB1D10 SINE Alu 22 116 -1 2 1371 236 329 0 14 chr12 103144102 103144176 -18113354 - ID2 SINE ID -9 74 2 2 1371 714 24 0 0 chr12 103144860 103144944 -18112586 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 2 1371 1246 49 0 0 chr12 103145005 103145148 -18112382 + B1_Mus1 SINE Alu 1 143 -5 2 1371 386 85 0 17 chr12 103145188 103145248 -18112282 + (GGA)n Simple_repeat Simple_repeat 3 61 0 2 1371 351 65 0 0 chr12 103145296 103145342 -18112188 + (TCC)n Simple_repeat Simple_repeat 1 46 0 2 1371 1035 63 71 0 chr12 103145410 103145537 -18111993 + B1_Mus2 SINE Alu 1 136 -11 2 1371 216 0 0 0 chr12 103145537 103145561 -18111969 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1371 277 314 83 153 chr12 103145607 103145727 -18111803 + ID_B1 SINE B4 2 136 -88 2 1371 312 290 0 83 chr12 103145727 103145771 -18111759 + PB1D7 SINE Alu 11 54 -66 2 1371 4578 44 0 4 chr12 103145771 103146295 -18111235 + L1Md_F2 LINE L1 6061 6582 0 2 1371 277 314 83 153 chr12 103146295 103146359 -18111171 + ID_B1 SINE B4 137 213 -11 2 1371 1003 202 6 6 chr12 103146560 103146739 -18110791 + B3A SINE B2 4 182 -16 2 1371 1876 202 14 25 chr12 103146778 103147144 -18110386 + ORR1D1 LTR MaLR 13 374 0 2 1371 409 262 48 10 chr12 103147891 103147995 -18109535 + B1F SINE Alu 42 149 0 2 1371 831 164 14 5 chr12 103147995 103148213 -18109317 + GA-rich Low_complexity Low_complexity 1 219 0 2 1371 1821 16 0 0 chr12 103148246 103148438 -18109092 + B2_Mm1a SINE B2 2 193 0 2 1371 4624 100 6 23 chr12 103148464 103149110 -18108420 + Lx LINE L1 6020 6654 0 2 1371 345 212 76 0 chr12 103149511 103149577 -18107953 + ID4_ SINE ID 1 71 -12 2 1371 360 279 19 0 chr12 103149639 103149743 -18107787 + PB1D10 SINE Alu 3 108 -9 2 1371 662 246 98 39 chr12 103149758 103149961 -18107569 - B3 SINE B2 -1 215 1 2 1371 372 357 31 37 chr12 103150076 103150239 -18107291 + RSINE1 SINE B4 2 163 -2 2 1371 240 111 0 0 chr12 103150247 103150292 -18107238 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 2 1371 285 208 107 40 chr12 103152082 103152157 -18105373 - ID2 SINE ID -2 81 2 2 1371 464 252 39 0 chr12 103152157 103152260 -18105270 - PB1D10 SINE Alu -6 111 5 2 1371 286 334 69 65 chr12 103152337 103152714 -18104816 - L2a LINE L2 -186 3240 2870 2 1371 4129 133 59 22 chr12 103152918 103153612 -18103918 + RMER6D LTR ERVK 1 720 0 2 1372 545 166 231 70 chr12 103154051 103154207 -18103323 - URR1A DNA MER1_type -1 225 45 2 1372 1011 254 52 35 chr12 103154363 103154649 -18102881 + B4 SINE B4 2 292 0 2 1372 1428 82 11 0 chr12 103154683 103154865 -18102665 + B2_Mm1a SINE B2 1 184 -9 2 1372 701 221 53 0 chr12 103154876 103155007 -18102523 + B1_Mur1 SINE Alu 3 140 -9 2 1372 1444 225 79 40 chr12 103155164 103155567 -18101963 - MTD LTR MaLR 0 419 1 2 1372 294 306 27 36 chr12 103155726 103155838 -18101692 - B1_Mur4 SINE Alu -35 115 5 2 1372 776 274 113 42 chr12 103155994 103156329 -18101201 + ORR1E LTR MaLR 1 359 0 2 1372 196 350 17 0 chr12 103156419 103156479 -18101051 + L2a LINE L2 3341 3401 -25 3 1372 320 245 82 0 chr12 103158012 103158038 -18099492 - ID_B1 SINE B4 -113 111 6 3 1372 366 194 42 0 chr12 103158038 103158110 -18099420 - ID4 SINE ID -3 80 6 3 1372 731 231 0 70 chr12 103158710 103158868 -18098662 - B1_Mur1 SINE Alu -1 148 2 3 1372 470 188 0 0 chr12 103159808 103159888 -18097642 + ID4 SINE ID 1 80 -3 3 1372 24 32 0 0 chr12 103160351 103160382 -18097148 + AT_rich Low_complexity Low_complexity 1 31 0 3 1372 24 0 0 0 chr12 103160433 103160457 -18097073 + AT_rich Low_complexity Low_complexity 1 24 0 3 1372 1034 245 14 18 chr12 103161480 103161700 -18095830 + ID_B1 SINE B4 6 224 0 3 1372 1120 240 149 12 chr12 103161889 103162231 -18095299 - Lx7 LINE L1 -504 7192 6804 3 1372 313 286 18 45 chr12 103162813 103162909 -18094621 + PB1D10 SINE Alu 9 106 -11 3 1372 186 43 0 0 chr12 103162909 103162932 -18094598 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1372 313 286 18 45 chr12 103162932 103162945 -18094585 + PB1D10 SINE Alu 107 115 -2 3 1372 1352 128 0 25 chr12 103163239 103163439 -18094091 - B2_Mm2 SINE B2 0 195 1 3 1372 558 261 53 23 chr12 103163774 103163907 -18093623 + B1F SINE Alu 5 141 -8 3 1372 1185 88 0 7 chr12 103164014 103164162 -18093368 + B1_Mus2 SINE Alu 1 147 0 3 1372 799 162 152 23 chr12 103164200 103164371 -18093159 + B2_Mm2 SINE B2 1 193 -2 3 1372 778 141 51 15 chr12 103164375 103164512 -18093018 + B1_Mur4 SINE Alu 9 150 0 3 1372 201 196 0 0 chr12 103164513 103164564 -18092966 + A-rich Low_complexity Low_complexity 1 51 0 3 1372 255 170 0 0 chr12 103164574 103164621 -18092909 + GA-rich Low_complexity Low_complexity 3 49 0 3 1372 945 181 112 10 chr12 103165406 103165612 -18091918 + ORR1C1-int LTR MaLR 1144 1370 0 3 1372 1466 163 97 3 chr12 103165629 103165918 -18091612 + ORR1C1 LTR MaLR 63 378 0 3 1372 920 229 25 5 chr12 103167052 103167254 -18090276 + B3 SINE B2 1 206 -10 3 1372 1275 79 51 0 chr12 103168347 103168524 -18089006 - B2_Mm2 SINE B2 -8 187 2 3 1372 307 293 16 47 chr12 103168929 103169058 -18088472 + RSINE1 SINE B4 2 126 -39 3 1372 477 127 0 0 chr12 103169081 103169160 -18088370 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1372 1189 48 0 14 chr12 103169270 103169417 -18088113 - B1_Mus1 SINE Alu -2 146 2 3 1372 204 40 0 0 chr12 103169508 103169533 -18087997 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 1372 210 233 128 55 chr12 103169585 103169694 -18087836 + PB1D10 SINE Alu 1 117 0 3 1372 292 305 39 84 chr12 103170449 103170603 -18086927 + B1F1 SINE Alu 3 149 0 3 1372 989 205 31 0 chr12 103172686 103172881 -18084649 - B3 SINE B2 -14 202 2 3 1372 226 287 136 18 chr12 103173064 103173174 -18084356 + PB1 SINE Alu 3 125 -2 3 1372 278 300 0 12 chr12 103173298 103173379 -18084151 + ID4_ SINE ID 4 83 0 3 1372 236 157 211 14 chr12 103173482 103173553 -18083977 + Lx8 LINE L1 6777 6861 -612 3 1372 2741 254 99 52 chr12 103173554 103173836 -18083694 + Lx8 LINE L1 6351 6643 -830 3 1372 787 169 41 21 chr12 103173836 103173981 -18083549 - B1_Mur2 SINE Alu 0 149 2 3 1372 2741 254 99 52 chr12 103173981 103174575 -18082955 + Lx8 LINE L1 6644 7268 -205 3 1372 288 224 0 0 chr12 103174595 103174662 -18082868 + GA-rich Low_complexity Low_complexity 3 69 0 3 1372 1026 115 0 0 chr12 103174675 103174831 -18082699 + (GGA)n Simple_repeat Simple_repeat 2 157 0 3 1372 28 61 0 0 chr12 103175011 103175060 -18082470 + AT_rich Low_complexity Low_complexity 1 49 0 3 1372 1176 69 0 0 chr12 103175071 103175215 -18082315 + B1_Mus2 SINE Alu 2 145 -2 3 1372 364 224 66 66 chr12 103175359 103175541 -18081989 + B3A SINE B2 3 184 -14 3 1372 190 322 54 22 chr12 103175740 103175832 -18081698 + MIR3 SINE MIR 10 104 -104 3 1372 1226 41 0 0 chr12 103176432 103176579 -18080951 - B1_Mus2 SINE Alu 0 147 1 3 1372 895 199 89 56 chr12 103176858 103177089 -18080441 + B3 SINE B2 1 216 0 3 1372 1978 58 47 20 chr12 103177348 103177645 -18079885 + MTB LTR MaLR 96 400 0 3 1372 194 100 25 0 chr12 103178237 103178267 -18079263 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 3 1372 1682 26 0 0 chr12 103178267 103178457 -18079073 - B2_Mm1a SINE B2 -2 191 2 3 1372 194 100 25 0 chr12 103178457 103178466 -18079064 + (TTTG)n Simple_repeat Simple_repeat 3 12 0 3 1372 941 182 34 19 chr12 103179223 103179430 -18078100 + B3 SINE B2 1 210 -6 3 1372 969 125 7 34 chr12 103179463 103179612 -18077918 + B1_Mus2 SINE Alu 3 147 0 3 1372 296 231 13 13 chr12 103179760 103179839 -18077691 - L2 LINE L2 -2426 993 915 3 1372 1189 61 0 0 chr12 103180583 103180730 -18076800 + B1_Mus2 SINE Alu 1 147 0 3 1372 325 139 98 37 chr12 103181185 103181267 -18076263 - B1_Mur3 SINE Alu -62 87 1 3 1372 1234 104 60 5 chr12 103181517 103181701 -18075829 - B2_Mm2 SINE B2 0 195 2 3 1372 684 0 0 0 chr12 103182022 103182098 -18075432 + (GAAA)n Simple_repeat Simple_repeat 4 79 0 3 1372 28 61 0 0 chr12 103182105 103182154 -18075376 + AT_rich Low_complexity Low_complexity 1 49 0 3 1372 404 118 0 14 chr12 103182195 103182264 -18075266 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1372 534 191 38 0 chr12 103182292 103182397 -18075133 - B3A SINE B2 -85 113 5 3 1372 353 163 260 42 chr12 103182421 103182517 -18075013 - PB1D9 SINE Alu -2 118 2 3 1372 30 37 0 18 chr12 103182517 103182551 -18074979 + AT_rich Low_complexity Low_complexity 1 34 0 3 1372 1400 75 37 0 chr12 103182551 103182739 -18074791 - B2_Mm2 SINE B2 0 195 1 3 1372 30 37 0 18 chr12 103182739 103182759 -18074771 + AT_rich Low_complexity Low_complexity 1 20 0 3 1372 264 204 20 0 chr12 103183076 103183125 -18074405 - L1M5 LINE L1 -298 5864 5815 3 1372 222 180 0 39 chr12 103183742 103183794 -18073736 + (CTTA)n Simple_repeat Simple_repeat 2 51 0 3 1372 511 245 58 38 chr12 103184320 103184512 -18073018 - B3A SINE B2 -10 185 1 3 1372 703 240 40 8 chr12 103184723 103184919 -18072611 + B3A SINE B2 1 189 -6 3 1372 345 47 0 0 chr12 103185455 103185498 -18072032 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 1372 395 179 94 0 chr12 103187850 103187947 -18069583 + L1ME3A LINE L1 5331 5437 -866 3 1372 687 208 8 0 chr12 103188076 103188206 -18069324 - B1_Mur1 SINE Alu -8 141 11 3 1372 4189 83 45 0 chr12 103188206 103188762 -18068768 + MT2B2 LTR ERVL 2 582 -2 3 1372 351 256 155 37 chr12 103188990 103189177 -18068353 + L1ME3A LINE L1 5699 5907 -266 3 1372 216 340 84 37 chr12 103189287 103189394 -18068136 + RSINE1 SINE B4 50 161 -4 3 1372 632 151 9 0 chr12 103189486 103189592 -18067938 - B1_Mus1 SINE Alu -24 124 18 3 1372 345 289 118 52 chr12 103189501 103189636 -18067894 - B4 SINE B4 -94 198 55 3 1372 489 234 28 0 chr12 103189836 103189943 -18067587 + PB1D9 SINE Alu 2 111 -9 3 1372 1172 54 0 20 chr12 103189948 103190099 -18067431 + B1_Mus1 SINE Alu 1 148 0 3 1372 324 70 0 0 chr12 103190100 103190143 -18067387 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 3 1372 857 229 67 0 chr12 103190255 103190434 -18067096 - B3 SINE B2 -10 206 16 3 1372 701 261 72 5 chr12 103190517 103190710 -18066820 + B3 SINE B2 1 206 -10 3 1372 271 286 34 45 chr12 103190747 103190835 -18066695 - ID_B1 SINE B4 -129 95 9 3 1372 1194 35 0 27 chr12 103191000 103191149 -18066381 + B1_Mus2 SINE Alu 1 145 -2 3 1372 335 323 0 29 chr12 103191183 103191285 -18066245 + RSINE1 SINE B4 67 165 0 3 1372 383 183 0 40 chr12 103191437 103191511 -18066019 - PB1D9 SINE Alu -49 71 1 3 1372 1236 111 20 40 chr12 103191732 103191930 -18065600 + B2_Mm2 SINE B2 2 195 0 3 1372 264 286 0 0 chr12 103192008 103192071 -18065459 + B4A SINE B4 2 64 -228 3 1372 210 298 0 0 chr12 103192682 103192729 -18064801 + B4A SINE B4 18 64 -228 3 1372 583 283 68 12 chr12 103192729 103192890 -18064640 + B4 SINE B4 18 187 -105 3 1372 399 41 0 0 chr12 103192945 103192994 -18064536 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1372 231 222 0 0 chr12 103193140 103193185 -18064345 - B4A SINE B4 -25 267 223 3 1372 591 207 46 142 chr12 103193431 103193473 -18064057 + B3 SINE B2 1 32 -184 3 1372 1200 48 7 0 chr12 103193473 103193620 -18063910 + B1_Mus1 SINE Alu 1 148 0 3 1372 591 207 46 142 chr12 103193620 103193774 -18063756 + B3 SINE B2 33 178 -38 3 1372 229 235 0 0 chr12 103193795 103193846 -18063684 - B1_Mm SINE Alu 0 147 97 3 1372 2899 98 32 41 chr12 103193846 103194284 -18063246 + Lx LINE L1 6188 6626 -28 3 1372 1113 95 0 0 chr12 103194284 103194431 -18063099 + B1_Mm SINE Alu 1 147 0 3 1372 2899 98 32 41 chr12 103194431 103194459 -18063071 + Lx LINE L1 6627 6650 -4 3 1372 2017 160 86 26 chr12 103194527 103194944 -18062586 + RMER10A LTR ERVL 1 442 0 3 1372 282 235 226 40 chr12 103194949 103195073 -18062457 + RSINE1 SINE B4 11 157 -8 3 1372 289 230 80 10 chr12 103195233 103195333 -18062197 + PB1D7 SINE Alu 9 111 -9 3 1372 210 71 0 0 chr12 103196678 103196706 -18060824 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1372 189 0 0 0 chr12 103197315 103197336 -18060194 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1372 2950 40 0 6 chr12 103197713 103198061 -18059469 + ORR1A1 LTR MaLR 1 346 0 3 1372 695 241 58 24 chr12 103198146 103198354 -18059176 + B3 SINE B2 2 216 0 3 1372 843 238 153 12 chr12 103198872 103199264 -18058266 + RMER15 LTR ERVL 30 499 -76 3 1372 441 301 66 38 chr12 103199436 103199647 -18057883 - MLT1A0 LTR MaLR -15 350 134 3 1372 314 132 0 0 chr12 103199669 103199722 -18057808 + B3A SINE B2 2 54 -144 3 1372 1210 61 7 0 chr12 103200053 103200200 -18057330 - B1_Mus1 SINE Alu 0 148 1 4 1372 446 55 0 76 chr12 103200325 103200404 -18057126 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 4 1372 1347 84 0 27 chr12 103200415 103200599 -18056931 - B2_Mm2 SINE B2 -14 181 3 4 1372 566 281 60 27 chr12 103200620 103200803 -18056727 - ID_B1 SINE B4 -33 191 3 4 1372 2169 78 30 20 chr12 103201084 103201445 -18056085 + RMER16 LTR ERVK 1 531 -2 4 1372 1025 236 0 5 chr12 103201623 103201836 -18055694 + B3 SINE B2 2 213 -3 4 1372 24 39 0 38 chr12 103201836 103201855 -18055675 + AT_rich Low_complexity Low_complexity 1 19 0 4 1372 856 50 190 0 chr12 103201855 103201976 -18055554 - B1_Mm SINE Alu -2 145 2 4 1372 24 39 0 38 chr12 103201976 103202009 -18055521 + AT_rich Low_complexity Low_complexity 1 32 0 4 1372 419 197 55 60 chr12 103202573 103202695 -18054835 - B1_Mur1 SINE Alu -12 137 13 4 1372 546 57 0 0 chr12 103202783 103202853 -18054677 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 4 1372 1359 69 40 0 chr12 103202853 103203026 -18054504 - B2_Mm2 SINE B2 -14 181 2 4 1372 1250 98 43 16 chr12 103203073 103203259 -18054271 - B2_Mm1a SINE B2 0 193 3 4 1372 1163 63 0 20 chr12 103203264 103203410 -18054120 - B1_Mus1 SINE Alu -5 143 1 4 1372 3169 78 0 0 chr12 103203562 103203962 -18053568 + MTB LTR MaLR 1 400 0 4 1372 183 156 0 0 chr12 103204076 103204108 -18053422 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 4 1372 231 212 14 57 chr12 103204115 103204185 -18053345 + L1M4 LINE L1 5725 5791 -387 4 1372 387 280 172 16 chr12 103204385 103204577 -18052953 + RMER15 LTR ERVL 336 557 -18 4 1372 3143 104 28 13 chr12 103205345 103205813 -18051717 + MT2C_Mm LTR ERVL 1 475 0 4 1372 588 234 43 0 chr12 103205853 103205994 -18051536 - B1F2 SINE Alu -1 148 2 4 1372 1288 111 17 6 chr12 103206085 103206266 -18051264 + B2_Mm2 SINE B2 1 183 -12 4 1372 186 43 0 0 chr12 103206266 103206289 -18051241 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1372 491 169 12 0 chr12 103206456 103206539 -18050991 - B3A SINE B2 -114 84 1 4 1372 464 219 185 13 chr12 103207300 103207457 -18050073 + B3A SINE B2 1 184 -14 4 1372 353 274 39 17 chr12 103208091 103208234 -18049296 - B1F SINE Alu -2 147 1 4 1372 1024 116 7 0 chr12 103208350 103208497 -18049033 + B1_Mus1 SINE Alu 1 148 0 4 1372 552 203 40 97 chr12 103208553 103208728 -18048802 + RSINE1 SINE B4 1 165 0 4 1372 743 235 44 48 chr12 103209161 103209367 -18048163 + B3 SINE B2 3 207 -9 4 1372 639 73 31 0 chr12 103209500 103209596 -18047934 - B2_Mm2 SINE B2 -4 191 93 4 1372 241 152 0 61 chr12 103210090 103210139 -18047391 + MER5B DNA MER1_type 7 52 -126 4 1372 463 314 20 41 chr12 103210627 103210773 -18046757 + RSINE1 SINE B4 3 145 -20 4 1372 1204 48 0 13 chr12 103210786 103210935 -18046595 + B1_Mus1 SINE Alu 2 148 0 4 1372 354 45 0 0 chr12 103211663 103211707 -18045823 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1372 470 275 38 71 chr12 103211710 103211894 -18045636 - B3A SINE B2 -19 179 2 4 1372 297 239 10 24 chr12 103211929 103212049 -18045481 - PB1D9 SINE Alu 0 149 34 4 1372 370 133 189 0 chr12 103212093 103212187 -18045343 + PB1D9 SINE Alu 2 115 -5 4 1372 224 30 30 0 chr12 103212294 103212327 -18045203 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4 1372 1267 28 0 0 chr12 103212327 103212472 -18045058 - B1_Mm SINE Alu -2 145 1 4 1372 21 0 0 0 chr12 103212477 103212498 -18045032 + AT_rich Low_complexity Low_complexity 1 21 0 4 1372 296 209 152 11 chr12 103212570 103212662 -18044868 - PB1D10 SINE Alu -1 116 12 4 1372 441 0 0 0 chr12 103212953 103213002 -18044528 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1372 279 75 0 24 chr12 103213100 103213141 -18044389 - B1_Mus1 SINE Alu -85 63 24 4 1372 947 99 7 0 chr12 103213241 103213382 -18044148 - B1_Mus1 SINE Alu 0 148 7 4 1372 254 250 92 0 chr12 103215958 103216034 -18041496 + MER33 DNA MER1_type 23 105 -219 4 1372 297 0 0 0 chr12 103216368 103216401 -18041129 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1372 374 248 164 8 chr12 103216412 103216534 -18040996 - RSINE1 SINE B4 -22 143 3 4 1372 207 0 0 0 chr12 103217636 103217659 -18039871 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1372 830 250 28 0 chr12 103218007 103218183 -18039347 - B3 SINE B2 -35 181 1 4 1372 422 263 98 0 chr12 103218207 103218340 -18039190 + B1F1 SINE Alu 2 147 -2 4 1372 920 218 233 36 chr12 103218470 103218908 -18038622 - RMER4B LTR ERVK -36 549 26 4 1372 258 305 0 0 chr12 103219166 103219225 -18038305 + ID4 SINE ID 4 62 -21 4 1372 968 122 7 7 chr12 103220359 103220507 -18037023 + B1_Mus1 SINE Alu 1 148 0 4 1372 711 104 0 0 chr12 103222350 103222456 -18035074 - B2_Mm2 SINE B2 -88 107 2 4 1372 602 211 74 15 chr12 103222505 103222640 -18034890 + B1F SINE Alu 6 148 -1 4 1372 1068 149 193 0 chr12 103222654 103222835 -18034695 + B3 SINE B2 1 216 0 4 1372 294 286 71 0 chr12 103223072 103223142 -18034388 + ID4_ SINE ID 5 79 -4 4 1372 1131 54 0 39 chr12 103223874 103224027 -18033503 - B1_Mus1 SINE Alu 0 148 2 4 1372 23 0 0 0 chr12 103224133 103224156 -18033374 + AT_rich Low_complexity Low_complexity 1 23 0 4 1372 39 0 0 0 chr12 103224523 103224562 -18032968 + AT_rich Low_complexity Low_complexity 1 39 0 4 1372 349 230 14 0 chr12 103224817 103224891 -18032639 + ID_B1 SINE B4 78 152 -72 4 1372 257 156 0 22 chr12 103225022 103225068 -18032462 + B1F SINE Alu 15 59 -90 4 1372 441 0 0 0 chr12 103225086 103225135 -18032395 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1372 677 239 57 25 chr12 103225663 103225822 -18031708 - RSINE1 SINE B4 0 165 2 4 1372 1211 86 20 70 chr12 103226377 103226578 -18030952 - B2_Mm2 SINE B2 -3 192 2 4 1372 182 270 79 0 chr12 103226897 103226960 -18030570 - L2 LINE L2 -3294 125 58 4 1372 191 274 32 16 chr12 103227209 103227272 -18030258 + MIRc SINE MIR 95 158 -110 4 1372 219 157 0 0 chr12 103227293 103227344 -18030186 + T-rich Low_complexity Low_complexity 1 51 0 4 1372 1266 20 0 7 chr12 103227344 103227491 -18030039 - B1_Mus2 SINE Alu 0 147 2 4 1372 1458 74 16 0 chr12 103227494 103227684 -18029846 - B2_Mm2 SINE B2 0 195 3 4 1372 1354 242 199 24 chr12 103228327 103228956 -18028574 - Lx8 LINE L1 -148 7325 6587 4 1372 402 228 118 10 chr12 103229187 103229289 -18028241 - RSINE1 SINE B4 -41 124 12 4 1372 408 40 0 0 chr12 103229301 103229351 -18028179 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1372 440 206 75 0 chr12 103229456 103229563 -18027967 - PB1D9 SINE Alu -1 119 5 4 1372 518 255 63 57 chr12 103230996 103231198 -18026332 - L1M2 LINE L1 -765 5526 5319 4 1372 1681 26 5 0 chr12 103231198 103231390 -18026140 - B2_Mm1a SINE B2 0 193 1 4 1372 518 241 102 98 chr12 103231390 103231559 -18025971 - L1M2 LINE L1 -982 5318 5149 4 1372 630 207 96 7 chr12 103231630 103231766 -18025764 - B1_Mur2 SINE Alu 0 149 2 4 1372 315 0 0 0 chr12 103232411 103232446 -18025084 + (TATG)n Simple_repeat Simple_repeat 3 37 0 4 1372 289 308 0 42 chr12 103232446 103232541 -18024989 - PB1D10 SINE Alu -14 103 13 4 1372 189 0 0 0 chr12 103232561 103232582 -18024948 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1372 255 182 91 5 chr12 103232753 103232864 -18024666 - L1MC4 LINE L1 0 8042 7829 4 1372 255 61 0 0 chr12 103233352 103233385 -18024145 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1372 681 233 122 0 chr12 103233418 103233598 -18023932 - B3 SINE B2 0 216 15 4 1372 484 284 18 61 chr12 103233626 103233791 -18023739 - RSINE1 SINE B4 -6 159 2 4 1372 3467 28 5 0 chr12 103234043 103234437 -18023093 - MTA_Mm LTR MaLR 0 396 1 4 1372 223 291 0 0 chr12 103236479 103236534 -18020996 + ID4_ SINE ID 2 56 -27 4 1372 261 311 37 29 chr12 103238001 103238137 -18019393 - L2b LINE L2 -182 3193 3057 4 1372 520 204 19 19 chr12 103238179 103238284 -18019246 - PB1D10 SINE Alu -7 110 6 4 1372 30 0 0 0 chr12 103238286 103238316 -18019214 + AT_rich Low_complexity Low_complexity 1 30 0 4 1372 180 143 29 0 chr12 103238672 103238707 -18018823 - MER5B DNA MER1_type -138 40 5 4 1372 219 257 71 0 chr12 103239220 103239290 -18018240 - ID4_ SINE ID -7 76 2 4 1372 311 67 352 19 chr12 103239485 103239590 -18017940 - B2_Mm2 SINE B2 -8 187 48 4 1372 878 95 126 20 chr12 103239629 103239780 -18017750 - B2_Mm1t SINE B2 -26 167 1 4 1372 22 0 0 0 chr12 103239780 103239802 -18017728 + AT_rich Low_complexity Low_complexity 1 22 0 4 1372 25 31 0 0 chr12 103239819 103239851 -18017679 + AT_rich Low_complexity Low_complexity 1 32 0 4 1372 255 208 0 0 chr12 103241577 103241625 -18015905 + ZP3AR Satellite Satellite 38 85 -127 4 1372 469 194 11 0 chr12 103241583 103241676 -18015854 + BC1_Mm scRNA scRNA 1 94 -58 4 1372 532 219 9 0 chr12 103242203 103242308 -18015222 + PB1D10 SINE Alu 1 106 -11 4 1372 225 270 198 22 chr12 103243448 103243539 -18013991 + PB1D10 SINE Alu 6 112 -5 4 1372 404 171 0 0 chr12 103243546 103243616 -18013914 + ID4 SINE ID 1 70 -13 4 1372 192 152 0 0 chr12 103243755 103243788 -18013742 + T-rich Low_complexity Low_complexity 1 33 0 4 1372 888 260 89 175 chr12 103243797 103244110 -18013420 - L1MB8 LINE L1 -25 6159 5838 5 1372 310 260 71 30 chr12 103244110 103244209 -18013321 - PB1D10 SINE Alu 0 117 15 5 1372 888 260 89 175 chr12 103244209 103244659 -18012871 - L1MB8 LINE L1 -25 5837 5372 5 1372 243 0 0 0 chr12 103244663 103244690 -18012840 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1372 712 34 0 0 chr12 103244692 103244781 -18012749 - B1_Mus2 SINE Alu -6 141 53 5 1372 306 203 219 37 chr12 103244781 103244996 -18012534 - L1MB8 LINE L1 -792 5354 5101 5 1372 737 177 8 0 chr12 103245071 103245195 -18012335 - RSINE1 SINE B4 -33 132 8 5 1372 605 264 143 74 chr12 103245195 103245641 -18011889 - L1MB8 LINE L1 -1051 5095 4619 5 1372 255 382 18 0 chr12 103245856 103245966 -18011564 + PB1D10 SINE Alu 1 112 -5 5 1372 260 197 0 47 chr12 103246071 103246135 -18011395 - B3A SINE B2 -88 110 50 5 1372 350 256 195 10 chr12 103247136 103247341 -18010189 - L1MC4 LINE L1 -296 7586 7344 5 1372 771 191 20 0 chr12 103247374 103247521 -18010009 - B1_Mur4 SINE Alu 0 150 1 5 1372 364 269 123 7 chr12 103247646 103247792 -18009738 - L1MC4 LINE L1 -762 7280 7118 5 1372 593 248 87 47 chr12 103247872 103248147 -18009383 - L1MC4 LINE L1 -1076 6966 6681 5 1372 670 205 0 125 chr12 103248507 103248691 -18008839 - B3 SINE B2 -4 212 52 5 1372 322 303 59 29 chr12 103249318 103249454 -18008076 - MIRb SINE MIR -11 257 118 5 1372 348 286 50 30 chr12 103249534 103249635 -18007895 - RSINE1 SINE B4 -10 155 53 5 1372 462 18 0 0 chr12 103249670 103249725 -18007805 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 5 1372 374 223 320 0 chr12 103249725 103249828 -18007702 - B1_Mur1 SINE Alu -12 137 2 5 1372 235 388 118 0 chr12 103250850 103251087 -18006443 + L3 LINE CR1 3372 3636 -853 5 1372 309 51 0 0 chr12 103251273 103251312 -18006218 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 5 1372 441 0 0 0 chr12 103251312 103251361 -18006169 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1372 180 0 0 0 chr12 103251638 103251658 -18005872 + (CTA)n Simple_repeat Simple_repeat 1 20 0 5 1372 1213 61 0 0 chr12 103251873 103252020 -18005510 + B1_Mm SINE Alu 1 147 0 5 1372 188 299 15 0 chr12 103252039 103252106 -18005424 + L3 LINE CR1 4030 4097 -392 5 1372 258 299 13 0 chr12 103252300 103252377 -18005153 + BC1_Mm scRNA scRNA 14 91 -61 5 1372 333 310 44 0 chr12 103252379 103252492 -18005038 + B4A SINE B4 2 119 -173 5 1372 347 192 53 27 chr12 103253026 103253101 -18004429 + B3 SINE B2 1 77 -139 5 1372 281 322 50 23 chr12 103253101 103253320 -18004210 + L1MA4 LINE L1 5132 5356 -787 5 1372 1697 173 44 67 chr12 103253329 103253719 -18003811 + Lx5 LINE L1 6670 7050 0 5 1372 629 305 176 3 chr12 103253787 103254093 -18003437 - MTE2b LTR MaLR -12 367 9 5 1372 1189 271 53 58 chr12 103254103 103254572 -18002958 + L1MA4 LINE L1 5405 5871 -429 5 1372 708 262 6 24 chr12 103254705 103254869 -18002661 + RSINE1 SINE B4 3 163 -2 5 1372 592 225 6 64 chr12 103255089 103255260 -18002270 + RSINE1 SINE B4 4 164 -1 5 1372 4364 248 70 25 chr12 103255881 103256965 -18000565 + Lx8 LINE L1 6091 7226 -247 5 1372 393 39 0 0 chr12 103256965 103257016 -18000514 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 5 1372 4364 248 70 25 chr12 103257016 103257109 -18000421 + Lx8 LINE L1 7227 7320 -153 5 1372 769 148 104 0 chr12 103257145 103257280 -18000250 + B1_Mur4 SINE Alu 1 149 -1 5 1372 416 191 18 30 chr12 103257417 103257509 -18000021 + GA-rich Low_complexity Low_complexity 4 95 0 5 1372 320 279 0 48 chr12 103257509 103257592 -17999938 + ID4_ SINE ID 5 83 0 5 1372 416 191 18 30 chr12 103257592 103257666 -17999864 + polypurine Low_complexity Low_complexity 96 168 0 5 1372 199 111 0 27 chr12 103258167 103258204 -17999326 - MIRb SINE MIR -38 230 195 5 1372 753 161 0 53 chr12 103258313 103258464 -17999066 + B1_Mur2 SINE Alu 6 148 -1 5 1372 252 238 0 168 chr12 103259084 103259185 -17998345 + MIR3 SINE MIR 109 192 -16 5 1372 225 0 0 0 chr12 103259721 103259746 -17997784 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1372 535 241 68 0 chr12 103259759 103259892 -17997638 - RSINE1 SINE B4 -21 144 3 5 1372 243 0 0 0 chr12 103260143 103260170 -17997360 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1372 1040 166 64 20 chr12 103260236 103260439 -17997091 + B3 SINE B2 5 216 0 5 1372 327 245 0 81 chr12 103260812 103260923 -17996607 + BC1_Mm scRNA scRNA 2 103 -49 5 1372 398 287 41 27 chr12 103261693 103261840 -17995690 + MLT1K LTR MaLR 281 429 -166 5 1372 2570 164 254 21 chr12 103261922 103262634 -17994896 - RMER19B LTR ERVK -2 900 48 5 1372 388 186 0 0 chr12 103262604 103262674 -17994856 - RMER19B LTR ERVK -796 106 37 5 1372 5795 68 1 5 chr12 103262972 103264126 -17993404 - L1_Mus1 LINE L1 -277 6290 5142 5 1372 1236 221 151 43 chr12 103264337 103264835 -17992695 + RMER1C Other Other 622 1060 -282 5 1372 7145 57 0 0 chr12 103264823 103265688 -17991842 - L1Md_F2 LINE L1 -201 5682 4818 5 1372 7525 48 1 2 chr12 103265688 103266604 -17990926 + L1Md_F2 LINE L1 5668 6582 0 5 1372 1424 207 3 26 chr12 103266607 103266914 -17990616 + RMER1C Other Other 1040 1339 -3 5 1372 343 232 300 12 chr12 103267005 103267175 -17990355 + B4A SINE B4 46 264 -28 5 1372 342 0 0 0 chr12 103267242 103267280 -17990250 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1372 317 294 82 82 chr12 103268893 103269126 -17988404 - MIRb SINE MIR -27 241 9 5 1372 319 289 34 40 chr12 103269422 103269570 -17987960 + B1F SINE Alu 1 147 -2 5 1372 231 334 8 21 chr12 103269607 103269729 -17987801 + L2a LINE L2 3245 3414 -12 5 1372 342 352 39 40 chr12 103269901 103270121 -17987409 + MLT1H1 LTR MaLR 103 362 -233 5 1372 504 62 302 50 chr12 103270439 103270558 -17986972 - B2_Mm2 SINE B2 0 195 47 5 1372 1057 113 0 35 chr12 103270817 103270991 -17986539 - B2_Mm1t SINE B2 -24 169 2 5 1372 329 259 11 69 chr12 103271168 103271208 -17986322 - U6 snRNA snRNA -25 82 47 5 1372 1106 176 76 0 chr12 103271208 103271418 -17986112 + URR1A DNA MER1_type 1 226 0 5 1372 329 259 11 69 chr12 103271418 103271464 -17986066 - U6 snRNA snRNA -61 46 1 5 1372 327 204 57 0 chr12 103271580 103271668 -17985862 - MLT1N2 LTR MaLR 0 562 470 5 1372 731 255 153 52 chr12 103271668 103272172 -17985358 + L1MD LINE L1 3942 4496 -1650 5 1372 239 0 0 31 chr12 103272185 103272217 -17985313 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 5 1372 1045 93 0 0 chr12 103272218 103272368 -17985162 - B2_Mm2 SINE B2 -41 154 5 5 1372 382 18 18 18 chr12 103272402 103272458 -17985072 + (CAA)n Simple_repeat Simple_repeat 2 57 0 5 1372 846 318 111 11 chr12 103272524 103273191 -17984339 + L1M4 LINE L1 4569 5302 -844 5 1372 866 226 70 84 chr12 103273202 103273487 -17984043 + ORR1E LTR MaLR 7 287 -72 5 1372 1957 241 45 34 chr12 103273498 103273966 -17983564 - Lx6 LINE L1 -51 7409 6937 5 1372 315 221 13 25 chr12 103274144 103274223 -17983307 + PB1 SINE Alu 42 119 -8 5 1372 1337 16 29 7 chr12 103274223 103274677 -17982853 + (CA)n Simple_repeat Simple_repeat 1 464 0 5 1372 363 292 70 35 chr12 103274751 103274893 -17982637 + L1MC LINE L1 5483 5629 -715 5 1372 285 29 0 0 chr12 103274973 103275007 -17982523 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1372 1318 58 76 0 chr12 103275361 103275532 -17981998 + B2_Mm2 SINE B2 3 186 -9 5 1372 1119 214 0 27 chr12 103276149 103276370 -17981160 + B3 SINE B2 2 216 0 5 1372 676 271 114 33 chr12 103277142 103277193 -17980337 + Lx8 LINE L1 6241 6286 -1187 5 1372 2632 152 33 24 chr12 103277193 103277650 -17979880 + RMER6B LTR ERVK 1 461 0 5 1372 683 271 114 33 chr12 103277650 103277808 -17979722 + Lx8 LINE L1 6287 6467 -1006 5 1372 297 0 0 0 chr12 103277967 103278000 -17979530 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1372 469 200 52 21 chr12 103278005 103278102 -17979428 - PB1D10 SINE Alu -14 103 4 5 1372 239 297 236 15 chr12 103278639 103278834 -17978696 - L2 LINE L2 -342 3077 2840 5 1372 282 307 139 0 chr12 103278837 103278938 -17978592 - PB1D7 SINE Alu -3 117 3 5 1372 1056 134 0 0 chr12 103279093 103279264 -17978266 + (TTCC)n Simple_repeat Simple_repeat 4 174 0 5 1372 801 308 67 52 chr12 103279347 103279614 -17977916 - B4A SINE B4 0 292 22 5 1372 642 60 0 0 chr12 103280235 103280318 -17977212 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 5 1372 468 0 0 0 chr12 103280875 103280927 -17976603 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1372 416 139 0 12 chr12 103281462 103281542 -17975988 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1372 216 0 0 0 chr12 103282181 103282205 -17975325 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1372 369 308 107 26 chr12 103282268 103282590 -17974940 + LTR16C LTR ERVL 124 537 -1 5 1372 258 184 0 20 chr12 103282805 103282855 -17974675 + MER53 DNA hAT 1 49 -144 5 1372 299 307 91 51 chr12 103283259 103283434 -17974096 + LTR78 LTR ERV1 353 534 -770 5 1372 552 266 23 15 chr12 103283514 103283644 -17973886 - B1F SINE Alu -10 139 9 5 1372 513 256 28 55 chr12 103283771 103283916 -17973614 - MLT1A1 LTR MaLR 0 408 268 5 1372 825 79 0 0 chr12 103283919 103284033 -17973497 + (TTTC)n Simple_repeat Simple_repeat 1 114 0 5 1372 351 0 0 0 chr12 103284036 103284075 -17973455 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 1372 337 141 0 86 chr12 103284083 103284153 -17973377 - B2_Mm2 SINE B2 -107 109 47 5 1372 1290 97 11 0 chr12 103284220 103284396 -17973134 - B2_Mm1t SINE B2 -14 179 2 5 1372 360 323 41 83 chr12 103284451 103284620 -17972910 - MLT1A1 LTR MaLR -212 162 1 5 171 1038 229 5 5 chr12 103284655 103284861 -17972669 - B3 SINE B2 -8 208 3 5 1373 1139 341 130 46 chr12 103284869 103285674 -17971856 + BLACKJACK DNA AcHobo 238 1110 -1834 5 1373 377 222 40 10 chr12 103285822 103285922 -17971608 + PB1D10 SINE Alu 14 116 -1 5 1373 745 312 82 53 chr12 103285975 103286391 -17971139 + L1MB4 LINE L1 5590 6017 -163 5 1373 1777 215 21 0 chr12 103286414 103286754 -17970776 - ORR1E LTR MaLR -8 351 5 5 1373 251 337 63 52 chr12 103286761 103286952 -17970578 + B2_Mm1t SINE B2 1 193 0 5 1373 1773 278 82 36 chr12 103287232 103287870 -17969660 + BLACKJACK DNA AcHobo 1099 1765 -1179 5 1373 458 309 7 35 chr12 103287885 103288026 -17969504 - MER2 DNA MER2_type -29 316 180 5 1373 400 284 21 0 chr12 103288033 103288128 -17969402 + Charlie12 DNA MER1_type 7 103 -2770 5 1373 890 173 7 0 chr12 103288128 103288267 -17969263 + B1_Mur1 SINE Alu 2 141 -8 5 1373 242 29 29 0 chr12 103288270 103288305 -17969225 + (CAA)n Simple_repeat Simple_repeat 1 36 0 6 1373 207 100 0 0 chr12 103288314 103288344 -17969186 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1373 225 83 0 0 chr12 103288350 103288386 -17969144 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1373 561 137 0 0 chr12 103288386 103288503 -17969027 + (GA)n Simple_repeat Simple_repeat 2 118 0 6 1373 281 228 0 0 chr12 103288604 103288661 -17968869 + Charlie12 DNA MER1_type 2803 2859 -14 5 1373 248 343 121 21 chr12 103288676 103288816 -17968714 - MER2 DNA MER2_type -162 183 30 5 1373 423 267 78 67 chr12 103288882 103289075 -17968455 + BLACKJACK DNA AcHobo 1769 1963 -981 5 1373 256 317 0 0 chr12 103289090 103289150 -17968380 + ID2 SINE ID 23 82 -1 6 1373 710 243 55 22 chr12 103289425 103289606 -17967924 + B3A SINE B2 1 187 -11 6 1373 320 217 12 0 chr12 103289891 103289974 -17967556 - L1MB4 LINE L1 0 6180 6097 6 1373 477 122 0 0 chr12 103289975 103290049 -17967481 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 1373 262 246 145 0 chr12 103290247 103290316 -17967214 - 5S rRNA rRNA -29 92 14 6 1373 973 246 135 9 chr12 103290392 103290774 -17966756 - L1MB4 LINE L1 -435 5745 5305 6 1373 735 232 0 0 chr12 103290835 103290973 -17966557 + B1_Mur1 SINE Alu 1 138 -11 6 1373 380 312 16 117 chr12 103290992 103291239 -17966291 + ID_B1 SINE B4 2 223 -1 6 1373 549 68 0 0 chr12 103291299 103291373 -17966157 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1373 579 94 0 0 chr12 103291373 103291469 -17966061 + (GA)n Simple_repeat Simple_repeat 1 96 0 6 1373 311 280 48 167 chr12 103291871 103292081 -17965449 + MLT1B LTR MaLR 133 317 -73 6 1373 406 296 89 7 chr12 103292242 103292388 -17965142 - MER121 Unknown Unknown -104 308 151 6 1373 254 291 76 49 chr12 103292359 103292543 -17964987 + RLTR6_Mm LTR ERV1 367 555 -99 6 1373 1072 245 0 0 chr12 103292478 103292686 -17964844 - B3 SINE B2 -2 214 7 6 1373 412 276 61 30 chr12 103293850 103293981 -17963549 - MER5A DNA MER1_type -21 168 34 6 1373 200 397 33 46 chr12 103294011 103294164 -17963366 + MIRb SINE MIR 31 181 -87 6 1373 250 288 0 0 chr12 103294263 103294322 -17963208 + ID4_ SINE ID 22 80 -3 6 1373 447 277 86 20 chr12 103294462 103294613 -17962917 - MER5A1 DNA MER1_type -4 162 2 6 1373 656 261 23 37 chr12 103294624 103294839 -17962691 + B3 SINE B2 1 212 -4 6 1373 285 347 101 7 chr12 103295070 103295218 -17962312 + MIRc SINE MIR 100 261 -7 6 1373 218 289 70 35 chr12 103295712 103295798 -17961732 - MIRc SINE MIR -104 164 76 6 1373 495 0 0 0 chr12 103295900 103295955 -17961575 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1373 570 29 0 0 chr12 103296062 103296130 -17961400 + (TCCC)n Simple_repeat Simple_repeat 2 69 0 6 1373 262 282 50 76 chr12 103296763 103296882 -17960648 + MamRep434 DNA TcMar 114 229 -197 6 1373 2288 141 39 31 chr12 103297466 103297848 -17959682 - ORR1B1 LTR MaLR -8 386 2 6 1373 180 0 0 0 chr12 103298432 103298452 -17959078 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1373 761 204 144 0 chr12 103298495 103298662 -17958868 - B3 SINE B2 -20 196 6 6 1373 1055 303 14 29 chr12 103298791 103299070 -17958460 + B4A SINE B4 18 292 0 6 1373 229 197 0 27 chr12 103299353 103299426 -17958104 + CT-rich Low_complexity Low_complexity 4 74 0 6 1373 360 197 68 39 chr12 103299428 103299537 -17957993 - B1F2 SINE Alu -1 116 6 6 1373 1572 199 25 62 chr12 103301135 103301493 -17956037 - ORR1E LTR MaLR -14 345 1 6 1373 524 334 76 24 chr12 103301973 103302297 -17955233 + LTR16C LTR ERVL 187 538 0 6 1373 527 292 147 53 chr12 103302299 103302473 -17955057 - L1MD3 LINE L1 0 7995 7811 6 1373 1072 148 148 0 chr12 103302473 103302669 -17954861 + URR1B DNA MER1_type 1 225 0 6 1373 527 292 147 53 chr12 103302669 103302949 -17954581 - L1MD3 LINE L1 -185 7810 7498 6 1373 585 275 157 57 chr12 103303142 103303744 -17953786 + L1MA4 LINE L1 5378 6019 -281 6 1373 454 222 83 0 chr12 103303870 103303978 -17953552 + PB1D10 SINE Alu 1 117 0 6 1373 370 36 36 0 chr12 103304095 103304151 -17953379 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1373 337 261 77 17 chr12 103304220 103304337 -17953193 - B1F1 SINE Alu -21 128 5 6 1373 1003 197 72 0 chr12 103304339 103304532 -17952998 - B3 SINE B2 -8 208 2 6 1373 288 289 93 28 chr12 103304622 103304729 -17952801 - MLT1A1 LTR MaLR -3 405 292 6 1373 1173 228 35 38 chr12 103305441 103305729 -17951801 + B4A SINE B4 6 292 0 6 1373 247 186 133 17 chr12 103305755 103305815 -17951715 - MIR SINE MIR -21 241 175 6 1373 612 0 0 0 chr12 103305831 103305899 -17951631 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1373 198 340 39 58 chr12 103306417 103306520 -17951010 + MIRc SINE MIR 3 103 -165 6 1373 244 209 24 95 chr12 103307364 103307476 -17950054 + RMER17D LTR ERVK 347 458 -431 6 1373 1177 90 11 0 chr12 103307476 103307653 -17949877 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 6 1373 766 120 88 0 chr12 103307653 103307778 -17949752 - B1_Mur2 SINE Alu -12 137 2 6 1373 244 209 24 95 chr12 103307778 103307833 -17949697 + RMER17D LTR ERVK 459 502 -387 6 1373 286 277 98 88 chr12 103308471 103308941 -17948589 - L1MCb LINE L1 -4295 2712 1892 6 1373 745 267 0 12 chr12 103308941 103309108 -17948422 - RSINE1 SINE B4 0 165 1 6 1373 226 282 118 98 chr12 103309108 103309258 -17948272 - L1MCb LINE L1 -5302 1891 1739 6 1373 517 121 40 0 chr12 103309260 103309359 -17948171 + CT-rich Low_complexity Low_complexity 4 106 0 6 1373 1033 60 54 0 chr12 103309373 103309540 -17947990 + (TTTCC)n Simple_repeat Simple_repeat 3 178 0 6 1373 537 321 106 35 chr12 103309630 103310120 -17947410 - L1MCb LINE L1 -4852 1635 1111 6 1373 406 293 99 31 chr12 103310120 103310282 -17947248 + MIRb SINE MIR 67 239 -29 6 1373 396 0 0 0 chr12 103310751 103310795 -17946735 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1373 522 0 0 0 chr12 103310795 103310852 -17946678 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1373 908 275 146 9 chr12 103312204 103312520 -17945010 - MLT1B LTR MaLR 0 390 32 6 1373 486 75 0 0 chr12 103312521 103312588 -17944942 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1373 415 385 6 0 chr12 103312624 103312798 -17944732 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 1373 224 343 10 10 chr12 103312810 103312910 -17944620 + (TG)n Simple_repeat Simple_repeat 1 100 0 6 1373 506 267 203 4 chr12 103312925 103313166 -17944364 - B4A SINE B4 -1 291 3 6 1373 385 275 37 0 chr12 103313560 103313669 -17943861 + MER81 DNA AcHobo 1 113 -1 6 1373 2923 96 40 22 chr12 103313785 103314241 -17943289 + Lx LINE L1 6188 6651 -3 6 1373 292 304 35 113 chr12 103315032 103315147 -17942383 + MER5A DNA MER1_type 49 154 -35 6 1373 218 98 49 0 chr12 103316761 103316802 -17940728 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 6 1373 387 0 0 0 chr12 103317301 103317344 -17940186 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1373 233 288 0 40 chr12 103317484 103317560 -17939970 - MLT1A1 LTR MaLR 0 408 336 6 1373 904 252 78 17 chr12 103318433 103318448 -17939082 - B4A SINE B4 -47 245 229 6 1373 1434 24 0 0 chr12 103318448 103318618 -17938912 + (TCTCCC)n Simple_repeat Simple_repeat 4 173 0 6 1373 904 252 78 17 chr12 103318618 103318832 -17938698 - B4A SINE B4 -64 228 2 6 1373 252 319 53 9 chr12 103318833 103318947 -17938583 + L2 LINE L2 2595 2713 -706 6 1373 418 215 31 50 chr12 103319007 103319153 -17938377 - L1MB7 LINE L1 -239 5945 5804 6 1373 341 281 88 59 chr12 103319173 103319343 -17938187 + L2 LINE L2 2724 2898 -521 6 1373 229 319 24 40 chr12 103319387 103319511 -17938019 - MLT1A1 LTR MaLR -72 318 197 6 1373 301 207 32 75 chr12 103319672 103319766 -17937764 + L1MB7 LINE L1 5856 5945 -239 6 1373 268 345 67 0 chr12 103319826 103319945 -17937585 - L2 LINE L2 -706 2713 2587 6 1373 858 230 83 20 chr12 103319945 103320149 -17937381 + B4A SINE B4 2 218 -74 6 1373 315 0 0 0 chr12 103320152 103320187 -17937343 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1373 513 32 0 0 chr12 103320189 103320252 -17937278 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1373 355 250 110 0 chr12 103320252 103320352 -17937178 - L2 LINE L2 -1085 2334 2224 6 1373 530 297 152 44 chr12 103320371 103320404 -17937126 - ORR1E LTR MaLR 0 359 317 6 1373 387 0 0 0 chr12 103320404 103320447 -17937083 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 6 1373 530 297 152 44 chr12 103320447 103320709 -17936821 - ORR1E LTR MaLR -43 316 32 6 1373 849 255 94 0 chr12 103321487 103321742 -17935788 - MLT1B LTR MaLR -6 384 106 6 1373 198 0 0 0 chr12 103321750 103321772 -17935758 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 6 1373 758 242 138 20 chr12 103321819 103322072 -17935458 - B4 SINE B4 -8 284 2 6 1373 409 266 77 15 chr12 103322347 103322477 -17935053 + MER20B DNA MER1_type 29 166 -617 6 1373 953 296 67 10 chr12 103322581 103322878 -17934652 + MER2 DNA MER2_type 1 314 -31 6 1373 213 39 0 0 chr12 103323889 103323915 -17933615 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 6 1373 318 67 0 0 chr12 103325454 103325499 -17932031 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1373 423 0 0 0 chr12 103325499 103325546 -17931984 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1373 379 277 68 68 chr12 103325550 103325697 -17931833 - B4 SINE B4 -94 198 52 6 1373 412 219 0 0 chr12 103325663 103325745 -17931785 - ID_B1 SINE B4 0 224 143 6 1373 201 138 0 0 chr12 103325754 103325783 -17931747 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 6 1373 658 250 29 0 chr12 103325807 103325947 -17931583 - RSINE1 SINE B4 -21 144 1 6 1373 534 314 7 14 chr12 103325968 103326110 -17931420 - B1_Mur1 SINE Alu 0 149 9 6 1373 209 235 0 24 chr12 103326118 103326201 -17931329 + A-rich Low_complexity Low_complexity 4 84 0 6 1373 479 368 0 28 chr12 103326487 103326666 -17930864 - L3 LINE CR1 -12 4477 4304 6 1373 243 276 0 0 chr12 103326979 103327037 -17930493 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 6 1373 2801 133 161 4 chr12 103327247 103327739 -17929791 + RMER4B LTR ERVK 17 585 0 6 1373 183 266 90 74 chr12 103327827 103327949 -17929581 - MIRc SINE MIR -143 125 2 6 1373 455 224 111 8 chr12 103328263 103328380 -17929150 - MLT1A1 LTR MaLR -12 396 268 6 1373 1434 230 55 16 chr12 103328448 103328757 -17928773 - MTD LTR MaLR -96 323 3 6 1373 250 283 0 0 chr12 103329356 103329416 -17928114 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1373 1107 285 18 28 chr12 103329419 103329704 -17927826 - B4A SINE B4 -4 288 7 6 1373 182 118 29 0 chr12 103329708 103329742 -17927788 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 6 1373 779 261 24 78 chr12 103330430 103330725 -17926805 + RLTR11B LTR ERVK 7 285 -168 7 1373 600 220 42 36 chr12 103330836 103331001 -17926529 + RLTR11B LTR ERVK 286 451 -2 7 1373 1033 255 173 33 chr12 103331001 103331317 -17926213 - MTE2a LTR MaLR -17 362 1 7 1373 1802 147 30 57 chr12 103331603 103331971 -17925559 - RLTR15 LTR ERVK 0 359 2 7 1373 231 306 16 0 chr12 103332181 103332243 -17925287 - MER3 DNA MER1_type 0 209 147 7 1373 21 0 0 0 chr12 103332249 103332270 -17925260 + AT_rich Low_complexity Low_complexity 1 21 0 7 1373 896 237 29 14 chr12 103332296 103332506 -17925024 - B3 SINE B2 -3 213 1 7 1373 577 219 17 9 chr12 103332535 103332650 -17924880 + RSINE1 SINE B4 3 118 -47 7 1373 330 277 97 0 chr12 103332718 103332846 -17924684 - MER3 DNA MER1_type -25 184 46 7 1373 551 53 0 13 chr12 103333105 103333126 -17924404 + (TC)n Simple_repeat Simple_repeat 1 21 0 7 1373 1250 83 0 11 chr12 103333126 103333308 -17924222 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 7 1373 551 53 0 13 chr12 103333308 103333362 -17924168 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1373 263 280 0 74 chr12 103333428 103333509 -17924021 - MLT1K LTR MaLR -377 218 144 7 1373 266 250 37 24 chr12 103333967 103334027 -17923503 + B2_Mm2 SINE B2 25 84 -111 7 1373 288 0 0 0 chr12 103334027 103334059 -17923471 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1373 266 250 37 24 chr12 103334059 103334080 -17923450 + B2_Mm2 SINE B2 85 106 -89 7 1373 330 206 36 45 chr12 103334080 103334192 -17923338 + Lx9 LINE L1 7533 7643 -1 7 1373 242 318 161 8 chr12 103334308 103334438 -17923092 + RSINE1 SINE B4 2 151 -14 7 1373 427 241 129 14 chr12 103334999 103335146 -17922384 + MLT1C LTR MaLR 1 164 -303 7 1373 747 175 88 0 chr12 103335186 103335323 -17922207 + B1_Mur3 SINE Alu 1 149 0 7 1373 453 90 0 0 chr12 103335495 103335562 -17921968 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1373 476 280 109 57 chr12 103335591 103335784 -17921746 - B4A SINE B4 -1 291 89 7 1373 1179 117 0 0 chr12 103335792 103335972 -17921558 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1373 186 167 0 0 chr12 103336022 103336058 -17921472 + CT-rich Low_complexity Low_complexity 1 36 0 7 1373 594 0 0 0 chr12 103336058 103336124 -17921406 + (TTTTC)n Simple_repeat Simple_repeat 4 69 0 7 1373 297 333 24 8 chr12 103336539 103336663 -17920867 + MIRc SINE MIR 77 202 -66 7 1373 207 239 0 0 chr12 103336978 103337045 -17920485 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1373 845 256 131 8 chr12 103337045 103337305 -17920225 - B4A SINE B4 0 292 1 7 1373 25 0 0 0 chr12 103338178 103338203 -17919327 + AT_rich Low_complexity Low_complexity 1 25 0 7 1373 238 248 83 73 chr12 103339832 103339941 -17917589 + ORR1E LTR MaLR 51 160 -199 7 1373 189 238 62 31 chr12 103340673 103340738 -17916792 + L2b LINE L2 2530 2596 -823 7 1373 408 268 128 99 chr12 103340919 103341060 -17916470 - ID_B1 SINE B4 0 224 80 7 1373 696 320 60 28 chr12 103341092 103341375 -17916155 - B4 SINE B4 0 292 1 7 1373 680 340 5 10 chr12 103341386 103341579 -17915951 - B3A SINE B2 0 198 7 7 1373 475 143 13 0 chr12 103342149 103342226 -17915304 + Lx9 LINE L1 7210 7287 -357 7 1373 1555 151 37 0 chr12 103342246 103342518 -17915012 + RLTR11A2 LTR ERVK 246 527 0 7 1373 276 53 0 0 chr12 103343012 103343050 -17914480 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1373 869 294 36 58 chr12 103343072 103343347 -17914183 - B4 SINE B4 -4 288 20 7 1373 233 308 72 36 chr12 103343455 103343566 -17913964 + L2b LINE L2 3261 3375 0 7 1373 39 0 0 0 chr12 103343906 103343945 -17913585 + AT_rich Low_complexity Low_complexity 1 39 0 7 1373 208 108 0 51 chr12 103344747 103344786 -17912744 + (CAAAC)n Simple_repeat Simple_repeat 1 37 0 7 1373 240 284 150 45 chr12 103344859 103345106 -17912424 - L3 LINE CR1 -50 4439 4167 7 1373 1295 179 4 4 chr12 103345662 103345887 -17911643 - URR1B DNA MER1_type 0 225 1 7 1373 354 304 129 12 chr12 103346301 103346464 -17911066 - MTEb LTR MaLR -1 378 197 7 1373 483 18 0 0 chr12 103346464 103346520 -17911010 + (GGGA)n Simple_repeat Simple_repeat 1 56 0 7 1373 365 305 53 28 chr12 103346533 103346758 -17910772 - MLT2B5 LTR ERVL -370 231 2 7 1373 551 273 11 101 chr12 103346760 103346939 -17910591 + RSINE1 SINE B4 3 165 0 7 1373 1324 262 54 54 chr12 103347142 103347545 -17909985 + MTD LTR MaLR 2 376 -3 7 1373 325 331 56 46 chr12 103347548 103347819 -17909711 + MLT1A1 LTR MaLR 90 396 -12 7 1373 739 223 25 78 chr12 103348967 103349171 -17908359 + B3A SINE B2 1 193 -5 7 1373 239 20 77 39 chr12 103349244 103349296 -17908234 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 7 1373 414 350 158 17 chr12 103349996 103350600 -17906930 + Charlie20a DNA Charlie 116 804 -3 7 1373 356 257 141 42 chr12 103352438 103352580 -17904950 + MIR3 SINE MIR 3 158 -50 7 1373 212 167 0 0 chr12 103353247 103353283 -17904247 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1373 394 292 64 42 chr12 103354207 103354434 -17903096 + MIR SINE MIR 33 258 -4 7 1373 237 314 189 47 chr12 103354485 103354786 -17902744 + MLT1J1 LTR MaLR 62 405 -39 7 1373 429 20 0 0 chr12 103355618 103355668 -17901862 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1373 205 178 0 0 chr12 103355668 103355713 -17901817 + GA-rich Low_complexity Low_complexity 2 46 0 7 1373 852 171 0 0 chr12 103355725 103355865 -17901665 - B3A SINE B2 -58 140 1 7 1373 384 152 0 0 chr12 103355880 103355939 -17901591 - B4A SINE B4 -225 67 9 7 1373 601 308 23 0 chr12 103356932 103357104 -17900426 + MER5A DNA MER1_type 14 189 0 7 1373 788 325 33 77 chr12 103357144 103357444 -17900086 + B4A SINE B4 6 292 0 7 1373 38987 7 0 7 chr12 103358064 103363270 -17894260 + L1Md_A LINE L1 422 5586 -297 7 1373 9050 10 0 0 chr12 103363270 103364266 -17893264 + L1Md_A LINE L1 5587 6582 0 7 1373 204 158 0 0 chr12 103365218 103365256 -17892274 + T-rich Low_complexity Low_complexity 1 38 0 7 1373 1566 47 16 0 chr12 103365319 103365511 -17892019 + B2_Mm2 SINE B2 1 195 0 7 1373 352 296 48 95 chr12 103365669 103365837 -17891693 - MER5A1 DNA MER1_type -6 160 1 7 1373 302 0 26 0 chr12 103365948 103365986 -17891544 + (TTG)n Simple_repeat Simple_repeat 2 40 0 7 1373 233 197 16 32 chr12 103366850 103366913 -17890617 + G-rich Low_complexity Low_complexity 5 66 0 7 1373 29 0 0 0 chr12 103367176 103367205 -17890325 + GC_rich Low_complexity Low_complexity 1 29 0 7 1373 440 258 64 8 chr12 103368987 103369112 -17888418 + MER5A1 DNA MER1_type 15 146 -20 7 1373 630 257 53 5 chr12 103369417 103369605 -17887925 + B3A SINE B2 1 197 -1 7 1373 285 293 31 42 chr12 103370790 103370886 -17886644 - MIR SINE MIR -87 121 27 7 1373 1365 170 9 0 chr12 103370917 103371140 -17886390 + URR1B DNA MER1_type 1 225 0 7 1373 1127 205 124 49 chr12 103371702 103372050 -17885480 - ORR1D1 LTR MaLR 0 374 1 7 1373 474 49 0 0 chr12 103372118 103372179 -17885351 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1373 184 318 22 43 chr12 103372180 103372272 -17885258 - L2c LINE L2 -21 3366 3277 7 1373 246 224 55 66 chr12 103372422 103372513 -17885017 - MLT1K LTR MaLR -16 579 490 7 1373 963 166 200 0 chr12 103372597 103372772 -17884758 - B3 SINE B2 -6 210 1 7 1373 304 310 100 0 chr12 103373542 103373642 -17883888 + MER5A1 DNA MER1_type 42 151 -15 7 1373 343 277 101 14 chr12 103373964 103373986 -17883544 + CYRA11_Mm Unknown Y-chromosome 146 179 -438 7 1373 1112 138 34 121 chr12 103373986 103374225 -17883305 - URR1B DNA MER1_type 0 225 8 7 1373 423 288 84 8 chr12 103374312 103374488 -17883042 - MLT1A LTR MaLR -17 391 176 7 1373 465 206 0 0 chr12 103374508 103374615 -17882915 + CT-rich Low_complexity Low_complexity 2 108 0 7 1373 252 184 0 0 chr12 103374688 103374737 -17882793 + CT-rich Low_complexity Low_complexity 2 50 0 7 1373 426 279 31 55 chr12 103374745 103374908 -17882622 - MLT1A LTR MaLR -213 161 3 7 1373 228 356 32 73 chr12 103375313 103375437 -17882093 + MIR SINE MIR 114 232 -30 7 1373 449 322 108 19 chr12 103376639 103376851 -17880679 + MIR SINE MIR 11 241 -21 7 1373 605 270 87 49 chr12 103377016 103377304 -17880226 - L1MC2 LINE L1 -21 6323 6025 7 1373 703 245 146 0 chr12 103377328 103377520 -17880010 + ID_B1 SINE B4 2 221 -3 7 1373 1307 58 87 6 chr12 103377535 103377697 -17879833 + B2_Mm2 SINE B2 1 177 -18 7 1373 243 0 0 0 chr12 103377697 103377724 -17879806 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7 1373 243 0 0 0 chr12 103379486 103379513 -17878017 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1373 300 300 37 85 chr12 103380122 103380286 -17877244 - RMER30 DNA MER1_type -13 189 34 7 1373 360 321 123 17 chr12 103380753 103380964 -17876566 - MIR SINE MIR -37 225 2 7 1373 429 25 76 0 chr12 103381184 103381263 -17876267 + (TCCC)n Simple_repeat Simple_repeat 2 86 0 7 1373 268 242 99 20 chr12 103381264 103381365 -17876165 + MTEb LTR MaLR 251 359 -20 7 1373 612 282 13 0 chr12 103381711 103381867 -17875663 - MTEa LTR MaLR 0 379 222 7 1373 604 243 164 0 chr12 103382137 103382289 -17875241 - B3A SINE B2 -21 177 1 7 1373 205 194 62 46 chr12 103383636 103383701 -17873829 + MIR SINE MIR 59 124 -138 7 1373 234 283 116 54 chr12 103383900 103384012 -17873518 - MER103 DNA DNA -2 164 46 7 1373 1056 263 76 15 chr12 103384028 103384371 -17873159 - L1MB3 LINE L1 -3 6180 5817 7 1373 1117 223 20 63 chr12 103384402 103384704 -17872826 - B4 SINE B4 0 292 4 7 1373 243 315 102 0 chr12 103384705 103384832 -17872698 - L1MB3 LINE L1 -356 5833 5694 7 1373 246 345 16 70 chr12 103384929 103385057 -17872473 + MER5B DNA MER1_type 5 125 -53 7 1373 318 274 0 23 chr12 103386366 103386452 -17871078 + B4 SINE B4 6 89 -203 7 1373 938 221 30 0 chr12 103387075 103387274 -17870256 - B3 SINE B2 -10 206 2 7 1373 6808 72 7 37 chr12 103387363 103388306 -17869224 - L1_Mus3 LINE L1 -2 6636 5722 8 1373 1163 75 0 0 chr12 103388324 103388471 -17869059 - B1_Mus2 SINE Alu 0 147 1 8 1373 184 231 88 44 chr12 103388632 103388700 -17868830 - L3 LINE CR1 -3640 849 779 8 1373 411 217 58 60 chr12 103389963 103390110 -17867420 + MIR SINE MIR 44 207 -61 8 1373 328 290 143 108 chr12 103390143 103390514 -17867016 - L2a LINE L2 -50 3376 2993 8 1373 454 244 8 63 chr12 103390621 103390748 -17866782 + PB1D7 SINE Alu 1 120 0 8 1373 234 283 0 0 chr12 103391498 103391558 -17865972 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1373 774 279 50 86 chr12 103391562 103391864 -17865666 - B4A SINE B4 -1 291 1 8 1373 492 264 268 50 chr12 103392043 103392282 -17865248 + B4 SINE B4 2 292 0 8 1373 455 317 42 11 chr12 103393279 103393470 -17864060 - L1MD1 LINE L1 0 6242 6046 8 1373 704 153 83 8 chr12 103393473 103393605 -17863925 - B1_Mur1 SINE Alu -5 144 3 8 1373 816 246 115 5 chr12 103394157 103394357 -17863173 + B4 SINE B4 1 222 -70 8 1373 396 0 0 0 chr12 103394386 103394430 -17863100 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1373 437 311 163 52 chr12 103394472 103394742 -17862788 - LTR82A LTR ERVL -231 641 357 8 1373 423 0 0 0 chr12 103394742 103394789 -17862741 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 8 1373 437 311 163 52 chr12 103394789 103394922 -17862608 - LTR82A LTR ERVL -516 356 194 8 1373 267 31 0 0 chr12 103396172 103396204 -17861326 + (CTGGGG)n Simple_repeat Simple_repeat 6 37 0 8 1373 245 270 77 22 chr12 103396306 103396397 -17861133 - L2a LINE L2 -44 3382 3287 8 1373 438 53 0 0 chr12 103396521 103396578 -17860952 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1373 265 163 0 20 chr12 103396674 103396724 -17860806 - L2a LINE L2 -258 3168 3120 8 1373 512 101 0 11 chr12 103397494 103397584 -17859946 + (TATTG)n Simple_repeat Simple_repeat 2 90 0 8 1373 2696 53 9 0 chr12 103398282 103398605 -17858925 - ORR1A2 LTR MaLR -1 326 1 8 1373 1092 236 31 52 chr12 103398721 103399011 -17858519 - B4 SINE B4 -8 284 1 8 1373 528 250 0 0 chr12 103399044 103399152 -17858378 - PB1D10 SINE Alu -8 109 2 8 1373 1157 290 66 10 chr12 103399152 103399636 -17857894 + L1MB3 LINE L1 5671 6181 -2 8 1373 904 296 22 26 chr12 103400565 103400785 -17856745 + B4 SINE B4 1 215 -77 8 1373 234 0 0 0 chr12 103400785 103400811 -17856719 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1373 904 296 22 26 chr12 103400811 103400857 -17856673 + B4 SINE B4 216 265 -27 8 1373 423 0 0 0 chr12 103400857 103400904 -17856626 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1373 327 337 78 48 chr12 103400954 103401160 -17856370 - MIR SINE MIR -7 255 44 8 1373 268 294 70 23 chr12 103401744 103401873 -17855657 - L1M5 LINE L1 -423 5701 5567 8 1373 223 245 11 11 chr12 103405538 103405633 -17851897 + GA-rich Low_complexity Low_complexity 3 97 0 8 1373 357 24 0 0 chr12 103407625 103407667 -17849863 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1373 517 267 64 166 chr12 103407765 103408187 -17849343 - MTEb LTR MaLR 0 379 1 8 1373 249 342 89 0 chr12 103408305 103408451 -17849079 + HAL1 LINE L1 543 701 -1806 8 1373 284 386 33 38 chr12 103409257 103409440 -17848090 - MER20 DNA MER1_type -9 210 29 8 1373 610 251 132 10 chr12 103409612 103409817 -17847713 + B4A SINE B4 52 281 -11 8 1373 193 128 43 0 chr12 103409840 103409887 -17847643 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1373 394 322 83 96 chr12 103410398 103410586 -17846944 + HAL1 LINE L1 1160 1343 -1164 8 1373 808 229 138 0 chr12 103410586 103410774 -17846756 + ID_B1 SINE B4 2 215 -9 8 1373 394 322 83 96 chr12 103410774 103410960 -17846570 + HAL1 LINE L1 1344 1529 -978 8 1373 799 233 134 122 chr12 103411989 103412231 -17845299 - ORR1E LTR MaLR -2 357 105 8 1373 5953 55 18 16 chr12 103412231 103412995 -17844535 - L1Md_F2 LINE L1 -6 6576 5811 8 1373 799 233 134 122 chr12 103412995 103413095 -17844435 - ORR1E LTR MaLR -255 104 11 8 1373 3571 18 2 0 chr12 103413632 103414027 -17843503 - MTA_Mm LTR MaLR 0 396 1 8 1373 956 333 79 28 chr12 103414857 103415294 -17842236 + L1MB5 LINE L1 5439 5893 -281 8 1373 180 0 0 0 chr12 103415294 103415314 -17842216 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1373 956 333 79 28 chr12 103415314 103415521 -17842009 + L1MB5 LINE L1 5894 6116 -58 8 1373 360 169 0 15 chr12 103415742 103415808 -17841722 + tRNA-Ala-GCY_ tRNA tRNA 1 65 -10 8 1374 1076 245 119 0 chr12 103416396 103416657 -17840873 - B4A SINE B4 0 292 1 8 1374 366 282 81 93 chr12 103418076 103418322 -17839208 - L1M5 LINE L1 -440 5733 5491 8 1374 790 199 52 26 chr12 103418392 103418583 -17838947 - B3A SINE B2 0 198 3 8 1374 628 337 113 7 chr12 103419004 103419279 -17838251 + MER2 DNA MER2_type 1 304 -41 8 1374 288 265 48 139 chr12 103419441 103419735 -17837795 - RLTR21 LTR ERVK -230 1342 1076 8 1374 338 323 81 0 chr12 103419749 103419873 -17837657 + MIRb SINE MIR 56 189 -79 8 1374 285 29 0 0 chr12 103421136 103421170 -17836360 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 8 1374 193 311 16 32 chr12 103422189 103422252 -17835278 + MIR SINE MIR 35 96 -166 8 1374 523 290 52 52 chr12 103423085 103423314 -17834216 - MTEa LTR MaLR -123 256 28 8 1374 1132 298 40 21 chr12 103424207 103424683 -17832847 - L1MB3 LINE L1 -112 6071 5587 8 1374 269 326 92 8 chr12 103424955 103425085 -17832445 - MLT1J2 LTR MaLR -49 399 259 8 1374 198 0 0 0 chr12 103426124 103426146 -17831384 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1374 186 43 0 0 chr12 103426392 103426415 -17831115 + (CAGGG)n Simple_repeat Simple_repeat 4 26 0 8 1374 258 265 287 30 chr12 103426962 103427129 -17830401 + MLT1A0 LTR MaLR 31 240 -339 8 1374 286 238 116 19 chr12 103427604 103427709 -17829821 + MLT1A0 LTR MaLR 221 363 -27 8 1374 374 159 0 24 chr12 103428169 103428253 -17829277 + GA-rich Low_complexity Low_complexity 4 85 0 8 1374 525 207 76 17 chr12 103428260 103428378 -17829152 - RSINE1 SINE B4 -39 126 2 8 1374 288 333 82 43 chr12 103428390 103428647 -17828883 + Charlie20a DNA Charlie 212 478 -329 8 1374 820 264 82 43 chr12 103428739 103429020 -17828510 + B4A SINE B4 1 292 0 8 1374 419 211 53 0 chr12 103431491 103431567 -17825963 + MIR SINE MIR 39 118 -144 8 1374 1086 169 84 10 chr12 103431853 103432056 -17825474 - URR1A DNA MER1_type -8 218 1 8 1374 897 263 28 0 chr12 103432264 103432481 -17825049 - ID_B1 SINE B4 -1 223 1 8 1374 326 237 96 32 chr12 103433280 103433396 -17824134 + MIR SINE MIR 42 174 -94 8 1374 270 0 0 0 chr12 103433647 103433677 -17823853 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1374 274 260 59 3 chr12 103434476 103434561 -17822969 + ID4 SINE ID 10 97 -55 8 1374 282 295 143 0 chr12 103434563 103434675 -17822855 + Lx8 LINE L1 6828 6955 -518 8 1374 393 271 57 0 chr12 103434714 103434836 -17822694 + Lx8 LINE L1 7035 7163 -310 8 1374 273 271 188 0 chr12 103436648 103436744 -17820786 - MER20 DNA MER1_type 0 219 106 8 1374 1131 254 20 44 chr12 103436791 103436865 -17820665 - B4A SINE B4 0 292 231 8 1374 919 156 29 97 chr12 103436865 103437071 -17820459 - B2_Mm2 SINE B2 -3 192 1 8 1374 1131 254 20 44 chr12 103437071 103437292 -17820238 - B4A SINE B4 -62 230 4 8 1374 185 333 14 14 chr12 103438413 103438483 -17819047 - MIRm SINE MIR -192 84 15 8 1374 432 0 0 0 chr12 103439123 103439171 -17818359 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1374 245 317 161 71 chr12 103439251 103439604 -17817926 - MLT1A1 LTR MaLR -21 387 3 8 1374 903 268 37 33 chr12 103439660 103439930 -17817600 - MLT2C1 LTR ERVL -119 278 8 8 1374 414 245 149 0 chr12 103440122 103440216 -17817314 + B1F SINE Alu 13 120 -29 8 1374 620 293 91 26 chr12 103440343 103440574 -17816956 + MLT1C LTR MaLR 31 276 -191 8 1374 1394 243 64 39 chr12 103440636 103440943 -17816587 - MTE2b LTR MaLR 0 379 81 8 1374 297 0 0 0 chr12 103440943 103440976 -17816554 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1374 1394 243 64 39 chr12 103440976 103441028 -17816502 - MTE2b LTR MaLR -299 80 12 8 1374 216 143 0 0 chr12 103441808 103441850 -17815680 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1374 388 211 0 0 chr12 103441887 103441958 -17815572 - ID4 SINE ID -12 71 1 8 1374 275 255 43 13 chr12 103441958 103442090 -17815440 - L1ME1 LINE L1 -5 6159 6028 8 1374 499 254 86 31 chr12 103443405 103443759 -17813771 - L1MA4 LINE L1 -274 6023 5585 8 1374 429 246 15 7 chr12 103443814 103443949 -17813581 + L1M2 LINE L1 5186 5321 -822 8 1374 24 0 0 0 chr12 103445033 103445057 -17812473 + AT_rich Low_complexity Low_complexity 1 24 0 8 1374 332 295 19 28 chr12 103445483 103445591 -17811939 + MLT1A1 LTR MaLR 298 404 -4 8 1374 1227 68 0 0 chr12 103446024 103446172 -17811358 + B1_Mus1 SINE Alu 1 148 0 8 1374 264 59 0 0 chr12 103446173 103446207 -17811323 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1374 314 309 5 25 chr12 103446533 103446661 -17810869 + L1MC3 LINE L1 6024 6147 -197 8 1374 461 246 17 6 chr12 103446667 103446839 -17810691 + (TGGA)n Simple_repeat Simple_repeat 3 176 0 8 1374 893 257 19 37 chr12 103446926 103447140 -17810390 - B3 SINE B2 -4 212 3 8 1374 731 270 94 5 chr12 103447151 103447352 -17810178 - B4A SINE B4 -71 221 3 8 1374 207 314 57 23 chr12 103447647 103447735 -17809795 + MIRc SINE MIR 63 153 -115 8 1374 1511 233 148 22 chr12 103448105 103448557 -17808973 - RLTR11A2 LTR ERVK -14 513 5 8 1374 1162 213 111 7 chr12 103450048 103450327 -17807203 - ORR1D2 LTR MaLR 0 370 63 8 1374 1004 185 130 0 chr12 103452227 103452427 -17805103 - URR1A DNA MER1_type 0 226 1 8 1374 192 229 0 59 chr12 103452456 103452507 -17805023 - MIRc SINE MIR -136 132 85 8 1374 461 297 44 108 chr12 103452869 103452929 -17804601 + MER58A DNA MER1_type 9 59 -165 8 1374 728 279 13 40 chr12 103452929 103453002 -17804528 - ID_B1 SINE B4 -5 219 146 8 1374 477 0 0 0 chr12 103453002 103453055 -17804475 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1374 728 279 13 40 chr12 103453055 103453067 -17804463 - ID_B1 SINE B4 -79 145 137 8 1374 270 0 0 0 chr12 103453067 103453097 -17804433 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1374 728 279 13 40 chr12 103453097 103453234 -17804296 - ID_B1 SINE B4 -88 136 3 8 1374 476 284 49 14 chr12 103453234 103453377 -17804153 + MER58A DNA MER1_type 56 199 -25 8 1374 531 284 171 6 chr12 103453877 103454047 -17803483 + MER58A DNA MER1_type 26 223 -1 9 1374 236 260 78 59 chr12 103454059 103454161 -17803369 - RLTR20A1 LTR ERVK -88 463 360 9 1374 387 60 0 0 chr12 103455119 103455169 -17802361 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 9 1374 561 291 0 0 chr12 103455221 103455338 -17802192 + ID_B1 SINE B4 100 216 -8 9 1374 278 241 35 81 chr12 103455262 103455348 -17802182 + PB1D9 SINE Alu 38 119 -1 9 1374 240 276 95 77 chr12 103455432 103455601 -17801929 - MER21B LTR ERV1 -105 758 587 9 1374 805 304 148 34 chr12 103455641 103456053 -17801477 - MER21B LTR ERV1 -386 477 19 9 1374 393 122 0 0 chr12 103456053 103456127 -17801403 + (TC)n Simple_repeat Simple_repeat 1 74 0 9 1374 1257 269 11 3 chr12 103456161 103456448 -17801082 - B4A SINE B4 -2 290 2 9 1374 448 333 0 0 chr12 103456461 103456569 -17800961 - PB1D10 SINE Alu -9 108 1 9 1374 1002 164 0 0 chr12 103456580 103456799 -17800731 + CT-rich Low_complexity Low_complexity 1 219 0 9 1374 1076 38 8 0 chr12 103456802 103456935 -17800595 - B1_Mus1 SINE Alu 0 148 15 9 1374 215 191 172 16 chr12 103456997 103457061 -17800469 + MIR3 SINE MIR 103 176 -32 9 1374 338 332 121 61 chr12 103458187 103458517 -17799013 - ORR1D1 LTR MaLR 0 378 29 9 1374 288 256 268 16 chr12 103460459 103460642 -17796888 + L1MB8 LINE L1 5950 6178 0 9 1374 440 255 80 18 chr12 103460652 103460764 -17796766 + RSINE1 SINE B4 4 122 -43 9 1374 366 91 0 0 chr12 103460773 103460828 -17796702 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1374 217 330 136 0 chr12 103462256 103462344 -17795186 + PB1 SINE Alu 26 125 -2 9 1374 243 305 0 156 chr12 103462356 103462523 -17795007 + ZP3AR Satellite Satellite 48 188 -24 9 1374 225 259 0 49 chr12 103462525 103462586 -17794944 + ID4_ SINE ID 10 67 -16 9 1374 280 267 114 79 chr12 103462840 103462880 -17794650 - MLT1F2 LTR MaLR 0 560 523 9 1374 237 248 115 71 chr12 103462880 103462993 -17794537 + PB1D7 SINE Alu 1 118 -2 9 1374 280 267 114 79 chr12 103462993 103463066 -17794464 - MLT1F2 LTR MaLR -38 522 443 9 1374 303 369 101 45 chr12 103463399 103463796 -17793734 - MER20B DNA MER1_type -115 668 250 9 1374 767 142 8 0 chr12 103464198 103464332 -17793198 + (TGGA)n Simple_repeat Simple_repeat 3 137 0 9 1374 948 279 55 20 chr12 103464332 103464734 -17792796 - MLT2B3 LTR ERVL -38 516 7 9 1374 378 0 0 0 chr12 103465315 103465357 -17792173 + (TTG)n Simple_repeat Simple_repeat 1 42 0 9 1374 858 213 164 26 chr12 103465773 103466004 -17791526 + B4A SINE B4 20 282 -10 9 1374 519 17 0 0 chr12 103467041 103467101 -17790429 + (TC)n Simple_repeat Simple_repeat 1 60 0 9 1374 335 314 29 0 chr12 103467727 103467867 -17789663 + L1MB8 LINE L1 5816 5959 -219 9 1374 385 19 18 18 chr12 103468746 103468801 -17788729 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1374 335 185 0 0 chr12 103470854 103470908 -17786622 + ID4_ SINE ID 2 55 -28 9 1374 676 288 0 96 chr12 103473071 103473290 -17784240 - RMER30 DNA MER1_type 0 202 5 9 1374 2905 83 57 0 chr12 103473294 103473679 -17783851 + MTB_Mm LTR MaLR 1 407 0 9 1374 1078 117 61 152 chr12 103473976 103474239 -17783291 - ORR1C2 LTR MaLR 0 384 146 9 1374 774 153 23 0 chr12 103474442 103474573 -17782957 - ORR1C2 LTR MaLR -238 136 3 9 1374 242 190 117 99 chr12 103475136 103475247 -17782283 - PB1D10 SINE Alu -2 115 3 9 1374 578 274 16 8 chr12 103475571 103475696 -17781834 + B4 SINE B4 9 134 -158 9 1374 360 111 0 0 chr12 103476207 103476270 -17781260 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1374 616 265 88 6 chr12 103476546 103476612 -17780918 - ID_B1 SINE B4 -26 198 130 9 1374 540 0 0 0 chr12 103476612 103476672 -17780858 + (CCCCCT)n Simple_repeat Simple_repeat 5 64 0 9 1374 616 265 88 6 chr12 103476672 103476787 -17780743 - ID_B1 SINE B4 -95 129 4 9 1374 297 339 31 0 chr12 103477026 103477156 -17780374 + L1M5 LINE L1 5388 5521 -658 9 1374 966 229 149 21 chr12 103477859 103478100 -17779430 - B4A SINE B4 -19 273 2 9 1374 444 284 119 21 chr12 103478365 103478430 -17779100 + L2a LINE L2 2957 3022 -404 9 1374 225 0 0 0 chr12 103478430 103478455 -17779075 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 9 1374 444 284 119 21 chr12 103478455 103478583 -17778947 + L2a LINE L2 3023 3169 -257 9 1374 394 271 236 0 chr12 103481468 103481608 -17775922 - RMER30 DNA MER1_type -4 198 26 9 1374 211 211 0 0 chr12 103481636 103481674 -17775856 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1374 284 282 0 40 chr12 103481712 103481786 -17775744 + Charlie12 DNA MER1_type 2803 2873 0 9 1374 360 323 8 16 chr12 103482262 103482388 -17775142 - MLT1A LTR MaLR -15 452 328 9 1374 1182 78 0 0 chr12 103482482 103482662 -17774868 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1374 999 117 0 0 chr12 103482698 103482878 -17774652 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1374 564 289 110 11 chr12 103482904 103483002 -17774528 - B4 SINE B4 -91 201 85 9 1374 252 86 0 0 chr12 103483002 103483037 -17774493 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 9 1374 564 289 110 11 chr12 103483037 103483120 -17774410 - B4 SINE B4 -208 84 3 9 1374 377 274 50 17 chr12 103483120 103483234 -17774296 - MLT1A LTR MaLR -250 124 7 9 1374 568 282 80 4 chr12 103483726 103483975 -17773555 - L1MB8 LINE L1 -95 6083 5816 9 1374 334 185 200 0 chr12 103484076 103484141 -17773389 - ID2 SINE ID -4 79 2 9 1374 303 93 0 0 chr12 103484703 103484746 -17772784 + (ATG)n Simple_repeat Simple_repeat 1 43 0 9 1374 201 303 50 53 chr12 103486038 103486144 -17771386 - MIR SINE MIR -127 141 38 9 1374 545 167 0 0 chr12 103486336 103486426 -17771104 - B3A SINE B2 -105 93 4 9 1374 253 268 119 67 chr12 103486552 103486693 -17770837 + MIRc SINE MIR 11 154 -54 9 1374 1111 113 6 0 chr12 103486694 103486853 -17770677 - B2_Mm2 SINE B2 -35 160 1 9 1374 323 23 0 22 chr12 103486868 103486913 -17770617 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 9 1374 736 289 101 113 chr12 103486983 103487101 -17770429 + L1MB8 LINE L1 5318 5441 -737 9 1374 645 195 18 9 chr12 103487101 103487215 -17770315 + PB1D10 SINE Alu 2 116 -1 9 1374 736 289 101 113 chr12 103487215 103487407 -17770123 + L1MB8 LINE L1 5442 5630 -548 9 1374 477 0 0 0 chr12 103487407 103487460 -17770070 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1374 736 289 101 113 chr12 103487460 103488004 -17769526 + L1MB8 LINE L1 5631 6161 -17 9 1374 282 160 0 0 chr12 103488118 103488168 -17769362 + CT-rich Low_complexity Low_complexity 2 51 0 9 1374 1142 196 15 0 chr12 103488168 103488367 -17769163 - B3 SINE B2 -11 205 4 9 1374 312 266 113 31 chr12 103488368 103488465 -17769065 + PB1 SINE Alu 21 125 -2 9 1374 483 264 75 94 chr12 103489086 103489287 -17768243 + B4 SINE B4 95 291 -1 9 1374 180 0 0 0 chr12 103489287 103489307 -17768223 + (GA)n Simple_repeat Simple_repeat 2 21 0 9 1374 244 292 22 33 chr12 103489351 103489443 -17768087 - Charlie9 DNA MER1_type -2664 93 3 9 1374 521 297 100 12 chr12 103490080 103490411 -17767119 - L1MB7 LINE L1 -2 6182 5823 9 1374 568 270 130 4 chr12 103490491 103490744 -17766786 - L1MB7 LINE L1 -499 5685 5401 9 1374 468 0 0 0 chr12 103490747 103490799 -17766731 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1374 376 258 169 46 chr12 103490799 103490929 -17766601 - B4 SINE B4 -23 269 124 9 1374 822 327 24 14 chr12 103490952 103491365 -17766165 - L1MB7 LINE L1 -3054 3092 2676 9 1374 780 202 0 35 chr12 103491384 103491553 -17765977 + RSINE1 SINE B4 3 165 0 9 1374 1316 137 23 14 chr12 103491683 103491897 -17765633 - U3 snRNA snRNA -1 216 1 9 1374 593 135 453 0 chr12 103491919 103492067 -17765463 - B3 SINE B2 -1 215 1 9 1374 434 235 73 32 chr12 103493216 103493339 -17764191 - MIR SINE MIR -25 237 110 9 1374 1133 139 83 42 chr12 103493605 103493822 -17763708 - URR1A DNA MER1_type 0 226 1 9 1374 294 224 15 0 chr12 103493859 103493926 -17763604 - ID4 SINE ID -14 69 2 9 1374 198 0 0 0 chr12 103494184 103494206 -17763324 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1374 2450 95 6 21 chr12 103495097 103495429 -17762101 - ORR1A2 LTR MaLR 0 327 1 9 1374 220 282 82 27 chr12 103495920 103495993 -17761537 - MIRm SINE MIR -137 139 63 9 1374 766 244 17 69 chr12 103496000 103496275 -17761255 - MTE2a LTR MaLR -1 378 40 9 1374 440 77 0 15 chr12 103496346 103496412 -17761118 + (TTTTC)n Simple_repeat Simple_repeat 5 69 0 9 1374 2416 149 57 1 chr12 103496412 103496805 -17760725 - MTC LTR MaLR -20 401 1 9 1374 1021 207 29 15 chr12 103497757 103497952 -17759578 + B3 SINE B2 2 202 -14 9 1374 195 42 0 0 chr12 103497952 103497976 -17759554 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 9 1374 726 190 35 21 chr12 103498060 103498190 -17759340 + B1_Mur1 SINE Alu 2 136 -13 9 1374 204 40 0 0 chr12 103498190 103498215 -17759315 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 9 1374 726 190 35 21 chr12 103498215 103498229 -17759301 + B1_Mur1 SINE Alu 137 147 -2 9 1374 207 0 0 0 chr12 103498229 103498252 -17759278 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1374 976 200 90 28 chr12 103498270 103498481 -17759049 + ID_B1 SINE B4 1 224 0 9 1374 595 299 25 78 chr12 103498757 103499040 -17758490 - RMER15 LTR ERVL -15 560 293 9 1374 496 285 169 71 chr12 103499466 103499791 -17757739 - ORR1E LTR MaLR -2 357 1 9 1374 335 302 133 28 chr12 103500266 103500477 -17757053 - MLT1C LTR MaLR -193 274 42 1 1374 228 393 74 17 chr12 103500832 103501008 -17756522 - LTR86B1 LTR ERVL -6 487 302 2 1374 415 321 87 43 chr12 103502066 103502320 -17755210 - MLT1B LTR MaLR -43 347 83 3 1374 734 300 27 22 chr12 103503389 103503614 -17753916 + B4 SINE B4 67 292 0 4 1374 386 77 0 0 chr12 103503704 103503769 -17753761 - Lx LINE L1 0 6654 6590 5 1374 328 236 73 36 chr12 103503899 103504009 -17753521 - MIRb SINE MIR -45 223 110 6 1374 225 0 0 0 chr12 103506450 103506475 -17751055 + (CACTA)n Simple_repeat Simple_repeat 1 25 0 7 1374 368 20 20 0 chr12 103506475 103506523 -17751007 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1374 1224 0 0 0 chr12 103507677 103507813 -17749717 + (TC)n Simple_repeat Simple_repeat 1 136 0 9 1374 198 143 0 0 chr12 103508493 103508528 -17749002 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1 1374 225 0 0 0 chr12 103508600 103508625 -17748905 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1374 440 35 17 0 chr12 103510893 103510951 -17746579 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1374 569 284 0 0 chr12 103511140 103511281 -17746249 - RSINE1 SINE B4 -24 141 1 1 1374 470 264 90 13 chr12 103511282 103511516 -17746014 + L1MA4A LINE L1 5677 5928 -375 1 1374 309 51 0 0 chr12 103511530 103511569 -17745961 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1374 683 206 15 0 chr12 103511569 103511700 -17745830 - B1_Mur4 SINE Alu -11 139 7 1 1374 317 258 37 104 chr12 103511592 103511726 -17745804 - MT2B LTR ERVL -338 263 139 1 1374 202 289 27 63 chr12 103511774 103511885 -17745645 + G-rich Low_complexity Low_complexity 2 108 0 1 1374 714 249 22 6 chr12 103511965 103512147 -17745383 + B3 SINE B2 31 215 -1 1 1374 27 29 0 0 chr12 103512151 103512185 -17745345 + AT_rich Low_complexity Low_complexity 1 34 0 2 1374 308 227 103 0 chr12 103512994 103513091 -17744439 + PB1D10 SINE Alu 11 117 0 2 1374 279 304 0 0 chr12 103513322 103513394 -17744136 + PB1D10 SINE Alu 33 104 -13 2 1374 210 37 0 0 chr12 103513394 103513421 -17744109 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 1374 21 57 0 0 chr12 103513450 103513485 -17744045 + AT_rich Low_complexity Low_complexity 1 35 0 2 1374 242 56 28 0 chr12 103513999 103514035 -17743495 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 1374 487 287 132 23 chr12 103514794 103515149 -17742381 - MER63C DNA AcHobo -124 806 405 2 1374 610 286 6 12 chr12 103515202 103515365 -17742165 + RSINE1 SINE B4 2 163 -2 2 1374 240 321 228 28 chr12 103515992 103516242 -17741288 + MLT1F2 LTR MaLR 99 398 -162 2 1374 2250 178 154 69 chr12 103516484 103517047 -17740483 - RMER19C LTR ERVK 0 611 1 2 1374 3187 62 69 0 chr12 103517317 103517750 -17739780 + L1_Mus4 LINE L1 5984 6446 -190 3 1374 6171 62 32 5 chr12 103517818 103518650 -17738880 - RLTR13A LTR ERVK 0 855 1 3 1374 1231 263 88 10 chr12 103519457 103519600 -17737930 - L1MB8 LINE L1 -37 6141 6000 3 1374 210 37 0 0 chr12 103519600 103519627 -17737903 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 3 1374 1231 263 88 10 chr12 103519627 103519882 -17737648 - L1MB8 LINE L1 -179 5999 5713 3 1374 222 258 0 61 chr12 103519915 103519981 -17737549 - ID4_ SINE ID -20 63 2 3 1374 1113 216 36 162 chr12 103520041 103520405 -17737125 + MTE2a LTR MaLR 1 318 -61 3 1374 260 224 0 15 chr12 103520415 103520483 -17737047 - L1MB8 LINE L1 -574 5604 5538 3 1374 268 229 8 160 chr12 103520593 103520718 -17736812 + MER20 DNA MER1_type 108 213 -6 3 1374 240 324 28 0 chr12 103520930 103521038 -17736492 + L3 LINE CR1 4328 4438 -51 3 1374 21 57 0 0 chr12 103521398 103521433 -17736097 + GC_rich Low_complexity Low_complexity 1 35 0 3 1374 216 0 0 0 chr12 103521791 103521815 -17735715 + (G)n Simple_repeat Simple_repeat 1 24 0 3 1374 195 42 0 0 chr12 103522007 103522031 -17735499 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 4 1374 333 297 41 0 chr12 103527896 103528041 -17729489 + (TCCA)n Simple_repeat Simple_repeat 1 151 0 4 1374 369 241 0 0 chr12 103528079 103528191 -17729339 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 4 1374 462 250 114 0 chr12 103529156 103529288 -17728242 - RSINE1 SINE B4 -14 151 5 4 1374 412 316 92 61 chr12 103529622 103529851 -17727679 + MLT1J LTR MaLR 247 482 -30 4 1374 195 129 0 0 chr12 103529910 103529941 -17727589 + (GGAGA)n Simple_repeat Simple_repeat 1 31 0 4 1374 190 350 106 0 chr12 103531024 103531147 -17726383 + MIR SINE MIR 112 247 -15 4 1374 423 301 182 18 chr12 103531836 103531912 -17725618 - MER82 DNA MER2_type -203 450 374 4 1374 204 40 0 0 chr12 103531912 103531937 -17725593 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4 1374 423 301 182 18 chr12 103531937 103532080 -17725450 - MER82 DNA MER2_type -280 373 195 4 1374 863 270 44 73 chr12 103532977 103533321 -17724209 - MLT1A0 LTR MaLR -17 348 15 4 1374 291 329 53 18 chr12 103533820 103533990 -17723540 - MIRc SINE MIR -75 193 18 4 1374 240 353 12 0 chr12 103534932 103534951 -17722579 + MER3 DNA MER1_type 28 47 -162 5 1374 233 296 127 18 chr12 103534951 103535061 -17722469 - MER3 DNA MER1_type 0 209 88 5 1374 2450 191 25 17 chr12 103535181 103535698 -17721832 - RLTR11A2 LTR ERVK -6 521 1 5 1374 348 257 105 0 chr12 103536020 103536125 -17721405 - MLT1A0 LTR MaLR -243 122 7 5 1374 467 138 11 0 chr12 103536333 103536420 -17721110 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1374 827 280 41 33 chr12 103536452 103536722 -17720808 - B4 SINE B4 -6 286 15 5 1374 1008 131 200 0 chr12 103536819 103536994 -17720536 + B3 SINE B2 1 210 -6 5 1374 714 167 45 0 chr12 103537044 103537176 -17720354 + B1_Mur4 SINE Alu 2 139 -11 5 1374 501 231 13 13 chr12 103537273 103537431 -17720099 + C-rich Low_complexity Low_complexity 4 161 0 5 1374 642 258 20 70 chr12 103538592 103538792 -17718738 - B3A SINE B2 -6 192 3 5 1374 1076 144 3 11 chr12 103538864 103539144 -17718386 + (TGGA)n Simple_repeat Simple_repeat 1 278 0 6 1374 1820 180 53 14 chr12 103539345 103539392 -17718138 + MTD LTR MaLR 31 75 -344 6 1374 1936 161 33 16 chr12 103539392 103539758 -17717772 - ORR1D1 LTR MaLR -2 372 1 6 1374 1820 180 53 14 chr12 103539758 103540071 -17717459 + MTD LTR MaLR 76 405 -14 6 1374 181 250 81 81 chr12 103541428 103541502 -17716028 - MIR3 SINE MIR -52 156 83 6 1374 676 143 16 0 chr12 103541689 103541815 -17715715 - B1_Mur4 SINE Alu -21 129 2 6 1374 490 262 146 73 chr12 103541847 103542189 -17715341 + L1MB8 LINE L1 5760 6126 -52 6 1374 254 301 75 11 chr12 103542447 103542541 -17714989 - B4A SINE B4 -82 210 111 6 1374 285 155 86 0 chr12 103542559 103542617 -17714913 - B4A SINE B4 -228 64 2 6 1374 186 182 23 0 chr12 103543214 103543258 -17714272 + L3 LINE CR1 4321 4365 -124 6 1374 745 199 26 33 chr12 103543395 103543546 -17713984 + RSINE1 SINE B4 1 150 -15 6 1374 426 67 26 13 chr12 103544341 103544417 -17713113 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1374 882 296 14 86 chr12 103544423 103544502 -17713028 - B4A SINE B4 -8 284 227 7 1374 1626 44 0 0 chr12 103544502 103544708 -17712822 - L1Md_T LINE L1 0 6582 6377 7 1374 882 296 14 86 chr12 103544708 103544920 -17712610 - B4A SINE B4 -66 226 14 7 1374 1915 136 16 9 chr12 103544941 103545261 -17712269 + ORR1A3 LTR MaLR 1 322 -4 7 1374 623 289 0 0 chr12 103545861 103545996 -17711534 - RSINE1 SINE B4 -28 137 3 7 1375 24 0 0 0 chr12 103547716 103547740 -17709790 + AT_rich Low_complexity Low_complexity 1 24 0 7 1375 255 298 129 17 chr12 103547957 103548073 -17709457 - L1ME2z LINE L1 -150 6294 6166 7 1375 808 307 95 17 chr12 103548145 103548732 -17708798 - L1ME2z LINE L1 -511 5933 5301 7 1375 1133 231 41 11 chr12 103548816 103548894 -17708636 - B4 SINE B4 -9 283 206 7 1375 2152 141 21 11 chr12 103548894 103549268 -17708262 + ORR1C1 LTR MaLR 1 378 0 7 1375 1133 231 41 11 chr12 103549268 103549460 -17708070 - B4 SINE B4 -87 205 6 7 1375 2514 68 3 0 chr12 103550816 103551142 -17706388 - ORR1A2 LTR MaLR 0 327 1 7 1375 705 139 60 5 chr12 103551863 103552284 -17705246 + (TGGA)n Simple_repeat Simple_repeat 1 444 0 8 1375 558 133 36 15 chr12 103552295 103552432 -17705098 + (TGGA)n Simple_repeat Simple_repeat 4 143 0 8 1375 471 300 38 27 chr12 103552773 103552958 -17704572 - L1MB5 LINE L1 -6 6168 5982 8 1375 267 271 30 40 chr12 103553134 103553234 -17704296 - MIR SINE MIR -162 100 2 8 1375 1387 167 162 31 chr12 103553734 103554024 -17703506 - ORR1D2 LTR MaLR 0 370 36 8 1375 372 59 0 0 chr12 103554024 103554075 -17703455 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1375 1387 167 162 31 chr12 103554075 103554111 -17703419 - ORR1D2 LTR MaLR -335 35 1 8 1375 3174 48 2 5 chr12 103554157 103554554 -17702976 - MTA_Mm LTR MaLR 0 396 1 8 1375 8437 45 12 1 chr12 103554554 103555640 -17701890 - MTA_Mm-int LTR MaLR 0 1098 1 8 1375 3142 48 5 2 chr12 103555640 103556035 -17701495 - MTA_Mm LTR MaLR 0 396 1 8 1375 377 318 39 8 chr12 103557169 103557299 -17700231 - MIR SINE MIR -55 207 74 8 1375 220 269 19 0 chr12 103557321 103557373 -17700157 + B1F SINE Alu 92 144 -5 8 1375 345 285 77 86 chr12 103557802 103558036 -17699494 - L1MC3 LINE L1 -16 7769 7538 8 1375 275 272 29 1 chr12 103558084 103558177 -17699353 - ORR1E LTR MaLR -9 370 257 8 1375 525 278 42 79 chr12 103558289 103558504 -17699026 - ORR1E LTR MaLR -152 207 1 8 1375 182 37 0 36 chr12 103558596 103558624 -17698906 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 9 1375 265 264 240 6 chr12 103558644 103558823 -17698707 - L1MC3 LINE L1 -589 7196 6976 8 1375 1116 209 21 79 chr12 103558859 103559150 -17698380 - B4 SINE B4 -18 274 1 9 1375 1568 217 82 5 chr12 103559199 103559588 -17697942 + MTD LTR MaLR 1 419 0 9 1375 343 361 5 38 chr12 103559649 103559833 -17697697 - L1MC3 LINE L1 -926 6859 6682 8 1375 574 265 7 33 chr12 103559892 103560044 -17697486 - RSINE1 SINE B4 -15 150 3 9 1375 413 228 10 52 chr12 103561151 103561248 -17696282 + PB1D9 SINE Alu 28 120 0 9 1375 552 271 7 7 chr12 103561274 103561415 -17696115 + B1F1 SINE Alu 9 149 0 9 1375 261 242 16 0 chr12 103563527 103563589 -17693941 + ID2 SINE ID 16 78 -5 9 1375 251 367 33 26 chr12 103564633 103564784 -17692746 + MIRc SINE MIR 51 202 -66 9 1375 262 255 50 50 chr12 103564853 103564866 -17692664 - MT2B2 LTR ERVL -319 265 167 9 1375 372 209 58 0 chr12 103564866 103564952 -17692578 - PB1D7 SINE Alu -27 93 3 9 1375 711 175 0 0 chr12 103565615 103565741 -17691789 + B1_Mus1 SINE Alu 1 126 -22 1 1375 478 232 10 0 chr12 103566063 103566162 -17691368 - MLT1J1 LTR MaLR -299 145 46 1 1375 829 137 279 0 chr12 103566197 103566358 -17691172 - B3 SINE B2 -10 206 1 1 1375 338 329 74 28 chr12 103567246 103567462 -17690068 - MER31A LTR ERV1 -243 242 17 1 1375 282 362 46 17 chr12 103568325 103568499 -17689031 + MIR SINE MIR 31 209 -53 1 1375 869 162 0 0 chr12 103568717 103568865 -17688665 - B1_Mus1 SINE Alu 0 148 1 1 1375 328 335 29 58 chr12 103569095 103569269 -17688261 - MLT1I LTR MaLR -212 199 31 1 1375 181 333 37 12 chr12 103570017 103570099 -17687431 - L3 LINE CR1 -3672 817 734 1 1375 525 198 0 0 chr12 103570945 103571056 -17686474 + CT-rich Low_complexity Low_complexity 3 113 0 1 1375 216 216 0 0 chr12 103571071 103571108 -17686422 - B1F SINE Alu -101 48 12 1 1375 442 246 88 34 chr12 103572609 103572756 -17684774 - MLT1A1 LTR MaLR 0 408 254 1 1375 2497 131 54 104 chr12 103572863 103573400 -17684130 - RLTR28 LTR ERVL -14 510 1 1 1375 243 282 28 0 chr12 103573408 103573479 -17684051 + ID4 SINE ID 5 77 -6 1 1375 232 172 234 0 chr12 103573645 103573709 -17683821 + B4 SINE B4 206 284 -8 1 1375 611 268 175 25 chr12 103573768 103574207 -17683323 + L1MC LINE L1 2536 3040 -3106 1 1375 1158 139 0 0 chr12 103574608 103574788 -17682742 + URR1B DNA MER1_type 43 222 -3 1 1375 254 0 0 159 chr12 103576133 103576259 -17681271 + (CTCTG)n Simple_repeat Simple_repeat 5 110 0 1 1375 321 161 0 0 chr12 103576260 103576347 -17681183 + CT-rich Low_complexity Low_complexity 94 180 0 1 1375 341 258 11 0 chr12 103577334 103577427 -17680103 - PB1D10 SINE Alu 0 117 24 1 1375 621 303 132 38 chr12 103577478 103577930 -17679600 + MLT1H LTR MaLR 1 542 -7 1 1375 524 248 24 32 chr12 103578071 103578196 -17679334 + RSINE1 SINE B4 3 126 -39 1 1375 944 118 0 0 chr12 103578281 103578416 -17679114 - B1_Mur4 SINE Alu -13 137 3 1 1375 24 0 0 0 chr12 103578416 103578440 -17679090 + AT_rich Low_complexity Low_complexity 1 24 0 1 1375 354 236 0 106 chr12 103578455 103578559 -17678971 + PB1D7 SINE Alu 20 112 -8 1 1375 280 364 0 10 chr12 103579957 103580057 -17677473 + MER33 DNA MER1_type 35 133 -191 1 1375 396 0 0 0 chr12 103582025 103582069 -17675461 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1375 181 98 49 0 chr12 103582170 103582211 -17675319 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1375 250 86 0 0 chr12 103583502 103583537 -17673993 + B1_Mm SINE Alu 105 139 -8 1 1375 1388 241 48 17 chr12 103583990 103584341 -17673189 - MTEa LTR MaLR -4 375 14 1 1375 322 336 82 7 chr12 103584493 103584600 -17672930 + L1MD LINE L1 5195 5312 -834 1 1375 1112 82 0 0 chr12 103584600 103584747 -17672783 + B1_Mm SINE Alu 1 147 0 1 1375 322 336 82 7 chr12 103584747 103584774 -17672756 + L1MD LINE L1 5313 5339 -807 1 1375 1017 194 19 14 chr12 103584783 103584992 -17672538 + B3 SINE B2 1 210 -6 1 1375 499 240 25 0 chr12 103585002 103585123 -17672407 - B1_Mus1 SINE Alu -5 143 20 1 1375 223 284 0 43 chr12 103585204 103585274 -17672256 + L2a LINE L2 3322 3388 -38 1 1375 787 258 154 63 chr12 103585279 103585666 -17671864 - L1M4 LINE L1 -439 5734 5313 1 1375 1035 70 7 14 chr12 103585666 103585811 -17671719 - B1_Mus1 SINE Alu -2 146 3 1 1375 517 302 40 84 chr12 103585811 103585841 -17671689 - L1M4 LINE L1 -850 5312 5283 1 1375 641 160 0 0 chr12 103586474 103586574 -17670956 + B3 SINE B2 2 101 -115 1 1375 378 232 84 0 chr12 103586739 103586851 -17670679 - L1MB8 LINE L1 -26 6148 6025 1 1375 602 256 233 82 chr12 103587537 103587855 -17669675 - MLT1B LTR MaLR -18 372 7 1 1375 832 157 57 0 chr12 103589899 103590039 -17667491 - B1_Mur4 SINE Alu -1 149 2 1 1375 663 237 19 58 chr12 103590059 103590097 -17667433 - B3A SINE B2 0 198 166 1 1375 366 23 0 0 chr12 103590097 103590140 -17667390 + (TATG)n Simple_repeat Simple_repeat 4 46 0 1 1375 663 237 19 58 chr12 103590140 103590307 -17667223 - B3A SINE B2 -33 165 1 1 1375 578 192 6 0 chr12 103590653 103590814 -17666716 + (TGGA)n Simple_repeat Simple_repeat 3 164 0 1 1375 303 28 0 0 chr12 103590814 103590850 -17666680 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 1 1375 990 130 0 0 chr12 103590865 103591042 -17666488 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 1 1375 305 360 71 35 chr12 103593037 103593178 -17664352 + MER21B LTR ERV1 606 751 -112 1 1375 456 19 0 0 chr12 103593321 103593374 -17664156 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1375 180 0 0 0 chr12 103593374 103593394 -17664136 + (TTG)n Simple_repeat Simple_repeat 1 20 0 1 1375 242 290 29 0 chr12 103593737 103593806 -17663724 + ID4 SINE ID 7 77 -6 1 1375 184 304 0 0 chr12 103594566 103594622 -17662908 + MIR SINE MIR 110 165 -97 1 1375 432 192 183 0 chr12 103594783 103594887 -17662643 - RSINE1 SINE B4 -39 126 4 1 1375 1959 144 23 42 chr12 103597108 103597493 -17660037 - ORR1C1 LTR MaLR 0 378 1 1 1375 834 319 55 17 chr12 103597613 103597958 -17659572 - MT2A LTR ERVL -107 426 69 1 1375 506 238 87 0 chr12 103597892 103598018 -17659512 - MTE2a LTR MaLR -242 137 1 1 1375 1945 162 82 3 chr12 103598324 103598714 -17658816 - MTC LTR MaLR 0 421 1 1 1375 565 239 91 16 chr12 103600029 103600216 -17657314 + RMER30 DNA MER1_type 1 201 -1 1 1375 186 43 0 0 chr12 103600569 103600592 -17656938 + (GGA)n Simple_repeat Simple_repeat 3 25 0 1 1375 415 209 128 19 chr12 103600644 103600800 -17656730 + L1MB8 LINE L1 5806 5978 -200 1 1375 1066 264 64 18 chr12 103600800 103601143 -17656387 - ORR1E LTR MaLR 0 359 1 1 1375 246 261 99 86 chr12 103601149 103601300 -17656230 + L1MB8 LINE L1 6005 6157 -21 1 1375 289 344 32 16 chr12 103601955 103602079 -17655451 - Tigger8 DNA MER2_type -436 230 105 1 1375 1154 73 0 6 chr12 103602292 103602457 -17655073 - B2_Mm2 SINE B2 -5 190 27 1 1375 1598 16 5 0 chr12 103602459 103602650 -17654880 - B2_Mm1a SINE B2 0 193 2 1 1375 1003 228 155 4 chr12 103602794 103603045 -17654485 + B4 SINE B4 1 289 -3 1 1375 274 306 63 40 chr12 103604174 103604300 -17653230 - L2c LINE L2 -266 3121 2993 1 1375 474 216 0 49 chr12 103605121 103605243 -17652287 + PB1D10 SINE Alu 2 117 0 1 1375 374 287 0 0 chr12 103605264 103605358 -17652172 + BC1_Mm scRNA scRNA 7 100 -52 1 1375 209 272 50 71 chr12 103605502 103605601 -17651929 + MIRm SINE MIR 91 187 -89 1 1375 517 214 116 23 chr12 103608404 103608533 -17648997 + ID_B1 SINE B4 84 224 0 1 1375 226 275 115 66 chr12 103608422 103608605 -17648925 - YREP_Mm Unknown Unknown -1516 296 105 1 1375 206 62 31 0 chr12 103608633 103608665 -17648865 + (TCC)n Simple_repeat Simple_repeat 1 33 0 1 1375 498 162 0 0 chr12 103608792 103608909 -17648621 + (TGGA)n Simple_repeat Simple_repeat 1 117 0 1 1375 1217 241 60 30 chr12 103610268 103610635 -17646895 - MTEa LTR MaLR 0 379 2 1 1375 270 0 0 0 chr12 103611029 103611059 -17646471 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 1375 1089 82 0 0 chr12 103611059 103611198 -17646332 - B1_Mus1 SINE Alu -7 141 3 1 1375 585 276 76 43 chr12 103612265 103612582 -17644948 - MLT1C LTR MaLR -7 383 60 1 1375 388 272 48 0 chr12 103612679 103612782 -17644748 - MLT1H LTR MaLR -408 141 34 1 1375 183 143 28 28 chr12 103612992 103613028 -17644502 + MIR SINE MIR 83 118 -90 1 1375 181 306 0 0 chr12 103613562 103613611 -17643919 + L2 LINE L2 221 269 -3150 1 1375 186 103 0 0 chr12 103614661 103614690 -17642840 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1375 1257 35 0 0 chr12 103614693 103614835 -17642695 - B1_Mus1 SINE Alu -5 143 2 1 1375 1348 29 6 19 chr12 103615580 103615895 -17641635 + (CA)n Simple_repeat Simple_repeat 1 310 0 1 1375 272 170 37 19 chr12 103615914 103615968 -17641562 - B4A SINE B4 -236 56 2 1 1375 861 214 19 63 chr12 103616457 103616662 -17640868 - B3A SINE B2 -1 197 2 1 1375 1102 282 112 20 chr12 103616761 103617108 -17640422 - MTE2a LTR MaLR 0 379 1 1 1375 931 138 237 17 chr12 103617139 103617316 -17640214 - B3 SINE B2 0 216 1 1 1375 724 273 54 67 chr12 103618833 103619057 -17638473 - MTE2a LTR MaLR -54 325 105 1 1375 264 283 140 32 chr12 103619114 103619271 -17638259 - MIRc SINE MIR -67 201 28 1 1375 881 188 0 7 chr12 103619332 103619482 -17638048 + B1_Mur4 SINE Alu 2 150 0 1 1375 550 304 58 37 chr12 103619921 103620109 -17637421 + MER63A DNA AcHobo 4 195 -15 1 1375 306 315 147 22 chr12 103620962 103621186 -17636344 - L2b LINE L2 -53 3322 3071 1 1375 810 204 0 7 chr12 103621186 103621329 -17636201 + B1_Mur1 SINE Alu 1 142 -7 1 1375 1382 142 8 0 chr12 103622066 103622417 -17635113 + (TCCA)n Simple_repeat Simple_repeat 1 353 0 1 1375 207 238 9 38 chr12 103622433 103622538 -17634992 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 1 1375 864 221 58 58 chr12 103623886 103624112 -17633418 + URR1A DNA MER1_type 1 226 0 1 1375 1270 62 68 0 chr12 103624135 103624312 -17633218 + B2_Mm2 SINE B2 3 191 -4 1 1375 504 239 58 29 chr12 103624518 103624656 -17632874 + RSINE1 SINE B4 14 155 -10 1 1375 575 181 0 108 chr12 103624679 103624809 -17632721 - B1_Mur1 SINE Alu -2 147 32 1 1375 744 200 28 28 chr12 103625177 103625321 -17632209 + B1_Mur2 SINE Alu 1 144 -5 1 1375 180 0 0 0 chr12 103625322 103625342 -17632188 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1375 284 208 56 0 chr12 103625374 103625499 -17632031 + (TA)n Simple_repeat Simple_repeat 2 133 0 1 1375 458 17 17 0 chr12 103626237 103626296 -17631234 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1375 198 250 23 0 chr12 103626556 103626600 -17630930 + MIR SINE MIR 33 77 -131 1 1375 315 288 64 64 chr12 103626787 103626943 -17630587 - MER63A DNA AcHobo -39 171 16 2 1375 507 311 6 55 chr12 103627601 103627772 -17629758 + RSINE1 SINE B4 4 165 0 2 1375 252 288 151 40 chr12 103629123 103629275 -17628255 + L2c LINE L2 2993 3164 -223 2 1375 1179 117 28 0 chr12 103629330 103629510 -17628020 - B2_Mm2 SINE B2 -9 186 2 2 1375 216 0 0 0 chr12 103629522 103629546 -17627984 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1375 331 200 86 0 chr12 103629546 103629616 -17627914 - ID_B1 SINE B4 0 224 149 2 1375 767 200 91 0 chr12 103629626 103629682 -17627848 - URR1B DNA MER1_type 0 225 156 2 1375 237 33 0 0 chr12 103629682 103629712 -17627818 + (CCA)n Simple_repeat Simple_repeat 1 30 0 2 1375 767 200 91 0 chr12 103629712 103629830 -17627700 - URR1B DNA MER1_type -70 155 36 2 1375 238 319 0 42 chr12 103629829 103629901 -17627629 - B1_Mur3 SINE Alu -80 69 1 2 1375 318 200 97 28 chr12 103629853 103629925 -17627605 - ID_B1 SINE B4 -97 127 51 2 1375 365 171 157 12 chr12 103629924 103630007 -17627523 - ID_B1 SINE B4 -107 117 23 2 1375 383 231 13 0 chr12 103630078 103630156 -17627374 - PB1 SINE Alu -6 121 43 2 1375 701 208 51 46 chr12 103630284 103630481 -17627049 - B3A SINE B2 0 198 1 2 1375 996 180 26 26 chr12 103630595 103630789 -17626741 - B3 SINE B2 0 216 23 2 1375 282 29 0 0 chr12 103630976 103631011 -17626519 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1375 411 208 119 0 chr12 103631270 103631371 -17626159 + PB1 SINE Alu 1 113 -14 2 1375 274 255 170 14 chr12 103631451 103631598 -17625932 - L1MB8 LINE L1 -225 5953 5784 2 1375 411 261 13 80 chr12 103631934 103632084 -17625446 - ORR1D1 LTR MaLR -234 140 1 2 1375 524 241 65 43 chr12 103634949 103635088 -17622442 - ID_B1 SINE B4 -5 219 78 2 1375 225 0 0 0 chr12 103635268 103635293 -17622237 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2 1375 738 266 41 18 chr12 103635323 103635541 -17621989 + ID_B1 SINE B4 1 223 -1 2 1375 335 252 12 131 chr12 103635785 103635820 -17621710 - MT2B2 LTR ERVL -278 306 169 2 1375 731 156 41 0 chr12 103635820 103635942 -17621588 - B1_Mur4 SINE Alu -23 127 1 2 1375 188 135 81 0 chr12 103636624 103636661 -17620869 - L2b LINE L2 -8 3367 3328 2 1375 210 125 50 0 chr12 103637222 103637262 -17620268 + (CAGA)n Simple_repeat Simple_repeat 4 45 0 2 1375 775 123 14 14 chr12 103638653 103638793 -17618737 + GA-rich Low_complexity Low_complexity 2 141 0 2 1375 1113 102 79 6 chr12 103638808 103638986 -17618544 + B2_Mm2 SINE B2 2 192 -3 2 1375 296 280 72 36 chr12 103639298 103639409 -17618121 + MT2B2 LTR ERVL 146 260 -324 2 1375 576 228 110 0 chr12 103639316 103639443 -17618087 + ID_B1 SINE B4 79 219 -5 2 1375 261 0 0 0 chr12 103639653 103639682 -17617848 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1375 698 218 52 26 chr12 103639726 103639919 -17617611 - B3A SINE B2 0 198 1 2 1375 235 276 142 9 chr12 103640639 103640745 -17616785 + MER5A DNA MER1_type 70 189 0 2 1375 737 292 0 6 chr12 103641294 103641456 -17616074 + RSINE1 SINE B4 2 162 -3 2 1375 252 245 0 59 chr12 103641503 103641581 -17615949 + ID4 SINE ID 3 74 -9 2 1375 822 191 13 13 chr12 103641820 103641969 -17615561 + B1_Mur1 SINE Alu 1 149 0 2 1375 334 290 64 18 chr12 103642043 103642152 -17615378 + PB1D9 SINE Alu 2 115 -5 2 1375 198 0 0 0 chr12 103642918 103642940 -17614590 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1375 242 298 163 47 chr12 103642988 103643141 -17614389 + CYRA11_Mm Unknown Y-chromosome 172 342 -275 2 1375 1222 61 0 0 chr12 103643141 103643288 -17614242 + B1_Mus1 SINE Alu 2 148 0 2 1375 242 298 163 47 chr12 103643288 103643349 -17614181 + CYRA11_Mm Unknown Y-chromosome 343 411 -206 2 1375 255 303 92 0 chr12 103643614 103643690 -17613840 + PB1 SINE Alu 10 92 -35 2 1375 783 59 0 0 chr12 103643694 103643795 -17613735 + (GAAAA)n Simple_repeat Simple_repeat 5 105 0 2 1375 309 186 14 41 chr12 103643831 103643904 -17613626 + ID4 SINE ID 3 73 -10 2 1375 36803 31 0 0 chr12 103644292 103650985 -17606545 - L1Md_T LINE L1 0 6585 1 2 1375 405 109 0 0 chr12 103651967 103652031 -17605499 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1375 462 290 29 14 chr12 103652238 103652378 -17605152 + ID_B1 SINE B4 82 223 -1 2 1375 28 86 0 0 chr12 103652441 103652511 -17605019 + AT_rich Low_complexity Low_complexity 1 70 0 2 1375 751 254 50 25 chr12 103652534 103652736 -17604794 + ID_B1 SINE B4 5 211 -13 2 1375 269 181 258 31 chr12 103653884 103653981 -17603549 + B1_Mus1 SINE Alu 25 143 -5 2 1375 277 208 25 49 chr12 103655436 103655517 -17602013 + MER58D DNA MER1_type 308 386 0 2 1375 833 167 23 0 chr12 103655650 103655782 -17601748 + B1_Mm SINE Alu 1 135 -12 2 1375 808 201 0 0 chr12 103655825 103655959 -17601571 - B1_Mur1 SINE Alu -15 134 1 2 1375 3185 169 125 20 chr12 103656421 103656983 -17600547 + RLTR25B LTR ERVK 3 612 -416 2 1375 1180 61 0 7 chr12 103656983 103657131 -17600399 + B1_Mus1 SINE Alu 1 147 -1 2 1375 3185 169 125 20 chr12 103657131 103657256 -17600274 + RLTR25B LTR ERVK 613 762 -266 2 1375 782 194 45 265 chr12 103657615 103657763 -17599767 + RLTR25B LTR ERVK 734 883 -220 2 1375 234 0 0 0 chr12 103657763 103657789 -17599741 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1375 782 227 65 113 chr12 103657789 103658018 -17599512 + RLTR25B LTR ERVK 884 1103 0 2 1375 280 171 150 50 chr12 103658454 103658534 -17598996 + B1_Mur3 SINE Alu 2 89 -60 2 1375 773 238 0 35 chr12 103659010 103659180 -17598350 + RSINE1 SINE B4 2 165 0 2 1375 258 244 60 92 chr12 103659219 103659404 -17598126 + MER33 DNA MER1_type 128 306 -18 2 1375 472 267 31 0 chr12 103659411 103659572 -17597958 + (TG)n Simple_repeat Simple_repeat 1 166 0 2 1375 850 264 53 92 chr12 103659572 103659636 -17597894 - B4 SINE B4 0 292 237 2 1375 1240 172 215 52 chr12 103659636 103659966 -17597564 + ORR1C2 LTR MaLR 1 384 0 2 1375 850 264 53 92 chr12 103659966 103659978 -17597552 - B4 SINE B4 -56 236 225 2 1375 802 228 36 26 chr12 103659978 103660172 -17597358 - B3A SINE B2 0 198 3 2 1375 850 264 53 92 chr12 103660172 103660398 -17597132 - B4 SINE B4 -68 224 1 2 1375 395 202 17 147 chr12 103660728 103660740 -17596790 - MT2B LTR ERVL -348 253 212 2 1375 573 156 11 0 chr12 103660740 103660830 -17596700 - B1_Mus2 SINE Alu -56 91 1 2 1375 395 202 17 147 chr12 103660830 103660844 -17596686 - MT2B LTR ERVL -348 211 153 2 1375 476 265 132 27 chr12 103660850 103661157 -17596373 - L1MB7 LINE L1 -56 6122 5796 2 1375 255 298 78 59 chr12 103661385 103661529 -17596001 + MIR SINE MIR 19 152 -124 2 1375 225 65 0 0 chr12 103662072 103662103 -17595427 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1375 956 158 42 32 chr12 103662410 103662600 -17594930 - B2_Mm2 SINE B2 -1 194 3 2 1375 435 272 155 0 chr12 103662652 103662755 -17594775 - RSINE1 SINE B4 -45 120 2 2 1375 781 245 147 91 chr12 103662921 103663370 -17594160 + RMER5 LTR ERV1 61 534 0 2 1375 541 262 70 41 chr12 103663517 103663670 -17593860 + B3A SINE B2 23 180 -18 2 1375 213 121 0 0 chr12 103663670 103663703 -17593827 + (CATA)n Simple_repeat Simple_repeat 1 33 0 2 1375 541 262 70 41 chr12 103663703 103663720 -17593810 + B3A SINE B2 181 198 0 2 1375 919 150 7 7 chr12 103663727 103663875 -17593655 + B1_Mur4 SINE Alu 3 150 0 2 1375 1422 73 15 20 chr12 103663914 103664110 -17593420 + B2_Mm2 SINE B2 1 195 0 2 1375 1163 52 0 0 chr12 103664270 103664406 -17593124 - B1_Mus1 SINE Alu -11 137 2 2 1375 524 220 25 25 chr12 103664466 103664587 -17592943 - PB1 SINE Alu -3 124 4 2 1375 2110 38 4 0 chr12 103664866 103665127 -17592403 - RLTR10-int LTR ERVK -1686 301 40 2 1375 2926 59 7 81 chr12 103665136 103665557 -17591973 - RLTR10 LTR ERVK 0 390 1 2 1375 16312 27 4 3 chr12 103665557 103667512 -17590018 - RLTR10-int LTR ERVK -1 1986 1 2 1375 2879 59 7 81 chr12 103667512 103667933 -17589597 - RLTR10 LTR ERVK 0 390 1 2 1375 755 162 7 0 chr12 103668264 103668406 -17589124 + CT-rich Low_complexity Low_complexity 2 144 0 2 1375 218 298 18 0 chr12 103668417 103668474 -17589056 - B1F1 SINE Alu -91 58 1 2 1375 459 62 311 59 chr12 103668858 103668977 -17588553 - B2_Mm2 SINE B2 0 195 47 2 1375 1075 124 59 0 chr12 103668990 103669159 -17588371 - B2_Mm1t SINE B2 -14 179 1 2 1375 603 264 25 0 chr12 103669159 103669318 -17588212 - MER58B DNA MER1_type -7 334 172 2 1375 3581 53 0 15 chr12 103669467 103669922 -17587608 + L1Md_F2 LINE L1 6135 6582 0 2 1375 253 154 39 0 chr12 103669927 103669979 -17587551 + MamRep605 Unknown Unknown 600 653 -223 2 1375 384 297 75 67 chr12 103670088 103670133 -17587397 + MER2 DNA MER2_type 25 68 -277 2 1375 469 250 91 74 chr12 103670133 103670418 -17587112 + B4A SINE B4 1 290 -2 2 1375 384 297 75 67 chr12 103670418 103670625 -17586905 + MER2 DNA MER2_type 69 279 -66 2 1375 455 261 27 0 chr12 103671744 103671855 -17585675 - PB1D10 SINE Alu -2 115 2 2 1375 393 192 26 0 chr12 103671937 103672015 -17585515 - ID_B1 SINE B4 -8 216 137 2 1375 526 115 120 40 chr12 103672018 103672118 -17585412 + B1_Mus2 SINE Alu 31 138 -9 2 1375 320 250 13 0 chr12 103672215 103672291 -17585239 - ID4 SINE ID -4 79 3 2 1375 1972 112 66 0 chr12 103672625 103672930 -17584600 - ORR1A2 LTR MaLR 0 327 3 2 1375 246 318 78 0 chr12 103673009 103673138 -17584392 + LTR37A LTR ERV1 267 405 -21 2 1375 838 122 0 130 chr12 103673155 103673324 -17584206 + B1_Mus2 SINE Alu 1 147 0 2 1375 352 265 48 0 chr12 103673626 103673709 -17583821 - PB1D9 SINE Alu -32 88 2 2 1375 529 202 18 0 chr12 103673770 103673879 -17583651 - B1_Mm SINE Alu -30 117 7 2 1375 273 237 57 76 chr12 103673922 103674027 -17583503 + MT2B LTR ERVL 155 257 -344 2 1375 678 197 30 0 chr12 103673940 103674072 -17583458 + B1_Mur2 SINE Alu 14 149 0 2 1375 216 0 0 0 chr12 103674072 103674096 -17583434 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1375 1048 128 7 0 chr12 103674096 103674245 -17583285 + B1_Mur4 SINE Alu 1 150 0 2 1375 345 95 0 10 chr12 103674561 103674631 -17582899 - B1_Mur4 SINE Alu 0 150 83 2 1375 510 154 100 0 chr12 103674706 103674816 -17582714 - B1_Mur2 SINE Alu 0 149 29 2 1375 1011 150 209 0 chr12 103674867 103675054 -17582476 - URR1A DNA MER1_type 0 226 1 2 1375 333 47 0 0 chr12 103675577 103675620 -17581910 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1375 429 254 25 34 chr12 103675658 103675776 -17581754 + PB1D7 SINE Alu 1 120 0 3 1375 397 255 19 45 chr12 103675787 103675810 -17581720 + ID_B1 SINE B4 73 219 0 3 1375 708 156 31 0 chr12 103675810 103675938 -17581592 + B1_Mur2 SINE Alu 13 144 -5 3 1375 206 216 0 0 chr12 103675945 103675982 -17581548 + (CAA)n Simple_repeat Simple_repeat 3 39 0 3 1375 489 80 0 0 chr12 103676056 103676131 -17581399 + (TTTTG)n Simple_repeat Simple_repeat 3 77 0 3 1375 314 317 3 30 chr12 103677052 103677186 -17580344 + ID_B1 SINE B4 56 183 -41 3 1375 375 225 0 98 chr12 103677086 103677209 -17580321 + B1F1 SINE Alu 7 117 0 3 1376 303 283 21 21 chr12 103678650 103678744 -17578786 - B4 SINE B4 -79 213 120 3 1376 262 331 117 6 chr12 103678828 103679007 -17578523 + MER58A DNA MER1_type 19 217 -7 3 1376 786 161 7 27 chr12 103679695 103679842 -17577688 - B1_Mus1 SINE Alu 0 148 5 3 1376 568 233 0 16 chr12 103679873 103679995 -17577535 + PB1D7 SINE Alu 1 120 0 3 1376 204 204 0 36 chr12 103679995 103680051 -17577479 + A-rich Low_complexity Low_complexity 4 57 0 3 1376 465 148 0 0 chr12 103680051 103680132 -17577398 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 3 1376 429 226 9 9 chr12 103680502 103680609 -17576921 + B1_Mur2 SINE Alu 42 148 -1 3 1376 557 239 60 24 chr12 103680676 103680843 -17576687 - MER20 DNA MER1_type -4 215 43 3 1376 354 98 0 0 chr12 103680871 103680922 -17576608 + (CCG)n Simple_repeat Simple_repeat 2 52 0 3 1376 316 280 101 55 chr12 103681005 103681115 -17576415 + MIR SINE MIR 17 143 -125 3 1376 218 105 26 0 chr12 103681272 103681310 -17576220 + (CCCCCA)n Simple_repeat Simple_repeat 4 42 0 3 1376 189 0 0 0 chr12 103681378 103681399 -17576131 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1376 420 279 19 19 chr12 103681412 103681573 -17575957 + RSINE1 SINE B4 4 164 -1 3 1376 340 233 151 0 chr12 103682145 103682231 -17575299 + Lx8 LINE L1 7225 7323 -150 3 1376 180 0 0 0 chr12 103682241 103682261 -17575269 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1376 297 0 0 0 chr12 103682261 103682294 -17575236 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1376 1155 78 0 0 chr12 103682312 103682453 -17575077 + B1_Mus2 SINE Alu 1 141 -6 3 1376 195 125 0 0 chr12 103682584 103682624 -17574906 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 3 1376 1284 96 6 27 chr12 103682699 103682882 -17574648 - B2_Mm1t SINE B2 -14 179 1 3 1376 1648 21 0 16 chr12 103682883 103683076 -17574454 - B2_Mm1a SINE B2 -2 191 2 3 1376 436 118 0 14 chr12 103683084 103683153 -17574377 - B1_Mur2 SINE Alu -6 143 76 3 1376 864 204 193 0 chr12 103683168 103683349 -17574181 - B3 SINE B2 0 216 1 3 1376 553 290 74 6 chr12 103683502 103683665 -17573865 - B3A SINE B2 -24 174 1 3 1376 302 265 178 8 chr12 103684055 103684173 -17573357 + B1F SINE Alu 10 147 -2 3 1376 276 246 72 0 chr12 103684208 103684277 -17573253 + ID SINE ID 1 74 -150 3 1376 537 164 31 8 chr12 103684286 103684415 -17573115 + GA-rich Low_complexity Low_complexity 1 132 0 3 1376 342 295 66 9 chr12 103684554 103684660 -17572870 + PB1D10 SINE Alu 1 112 -5 3 1376 271 274 74 41 chr12 103684937 103685059 -17572471 + MLT1E2 LTR MaLR 270 395 -232 3 1376 2616 79 32 146 chr12 103685158 103685693 -17571837 + IAPLTR2_Mm LTR ERVK 1 474 -1 3 1376 574 182 99 0 chr12 103685838 103685959 -17571571 + B1_Mur2 SINE Alu 10 142 -7 3 1376 805 138 0 14 chr12 103685961 103686108 -17571422 + GA-rich Low_complexity Low_complexity 3 147 0 3 1376 212 304 0 0 chr12 103686353 103686399 -17571131 - ID4_ SINE ID -26 57 12 3 1376 503 318 0 0 chr12 103686435 103686586 -17570944 - RSINE1 SINE B4 -12 153 3 3 1376 203 301 68 68 chr12 103686665 103686811 -17570719 + L2b LINE L2 2929 3074 -301 3 1376 2241 234 32 13 chr12 103686922 103687108 -17570422 + RMER5 LTR ERV1 1 186 -348 3 1376 549 135 0 0 chr12 103687108 103687197 -17570333 + (ATG)n Simple_repeat Simple_repeat 2 90 0 3 1376 2241 234 32 13 chr12 103687197 103687533 -17569997 + RMER5 LTR ERV1 187 532 -2 3 1376 490 339 81 38 chr12 103687884 103687958 -17569572 - B4A SINE B4 -6 286 213 3 1376 883 171 27 0 chr12 103687958 103688104 -17569426 - B1_Mur4 SINE Alu 0 150 1 3 1376 490 339 81 38 chr12 103688104 103688265 -17569265 - B4A SINE B4 -80 212 41 3 1376 366 282 92 20 chr12 103688362 103688552 -17568978 + MIR SINE MIR 42 233 -29 3 1376 314 244 286 31 chr12 103689016 103689177 -17568353 - ID_B1 SINE B4 -21 203 2 3 1376 1053 90 0 0 chr12 103689250 103689383 -17568147 + B1_Mus2 SINE Alu 1 133 -14 3 1376 648 120 0 0 chr12 103690208 103690308 -17567222 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 3 1376 598 308 25 66 chr12 103690725 103690785 -17566745 + B4 SINE B4 37 96 -196 3 1376 1218 94 55 0 chr12 103690785 103690966 -17566564 + B2_Mm1a SINE B2 2 192 -1 3 1376 598 308 25 66 chr12 103690966 103691148 -17566382 + B4 SINE B4 97 269 -23 3 1376 360 0 0 0 chr12 103691148 103691188 -17566342 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1376 2427 143 2 53 chr12 103691193 103691628 -17565902 - MTC LTR MaLR -8 413 1 3 1376 755 161 41 55 chr12 103692216 103692361 -17565169 + B1_Mur1 SINE Alu 2 144 -5 3 1376 1107 88 0 0 chr12 103692406 103692554 -17564976 - B1_Mus1 SINE Alu 0 148 1 3 1376 1301 111 0 21 chr12 103692688 103692882 -17564648 - B2_Mm2 SINE B2 -3 192 3 3 1376 848 182 21 0 chr12 103692910 103693053 -17564477 - B1_Mus1 SINE Alu -2 146 1 3 1376 1245 196 60 86 chr12 103693189 103693525 -17564005 + RMER5 LTR ERV1 1 327 -207 3 1376 704 171 33 40 chr12 103693514 103693666 -17563864 + RMER5 LTR ERV1 273 423 -111 3 1376 308 127 0 18 chr12 103693664 103693720 -17563810 - RMER10A LTR ERVL -381 61 7 3 1376 1261 146 102 0 chr12 103693775 103693980 -17563550 - URR1A DNA MER1_type 0 226 1 3 1376 461 342 14 0 chr12 103694556 103694702 -17562828 + ID_B1 SINE B4 77 224 0 3 1376 725 145 130 0 chr12 103694733 103694864 -17562666 + B1_Mur4 SINE Alu 1 148 -2 3 1376 342 0 0 0 chr12 103694957 103694995 -17562535 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1376 204 40 0 0 chr12 103695328 103695353 -17562177 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1376 1124 68 0 33 chr12 103695353 103695506 -17562024 - B1_Mus1 SINE Alu 0 148 1 3 1376 544 260 49 55 chr12 103695625 103695788 -17561742 + B3A SINE B2 1 162 -36 3 1376 378 0 0 0 chr12 103695813 103695855 -17561675 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 1376 434 0 54 0 chr12 103695905 103695961 -17561569 + (GAAAA)n Simple_repeat Simple_repeat 5 63 0 3 1376 1302 95 0 71 chr12 103696009 103696247 -17561283 - RMER10B LTR ERVL -159 239 19 3 1376 861 295 29 22 chr12 103696475 103696752 -17560778 - B4A SINE B4 -7 285 7 3 1376 1182 123 37 16 chr12 103696812 103697002 -17560528 - B2_Mm2 SINE B2 0 195 2 3 1376 311 0 26 0 chr12 103697611 103697650 -17559880 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 1376 1002 132 0 0 chr12 103697650 103697786 -17559744 - B1_Mur4 SINE Alu -13 137 2 3 1376 390 144 244 0 chr12 103698278 103698368 -17559162 - B1_Mus1 SINE Alu -22 126 15 3 1376 2592 148 181 23 chr12 103698520 103699039 -17558491 - MT2B LTR ERVL 0 601 1 3 1376 252 0 0 0 chr12 103699100 103699128 -17558402 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1376 343 281 31 10 chr12 103699168 103699265 -17558265 - PB1D10 SINE Alu 0 117 19 3 1376 332 235 48 58 chr12 103699269 103699373 -17558157 - MLT1A1 LTR MaLR -305 103 1 3 1376 1022 209 0 0 chr12 103699729 103699911 -17557619 - B3A SINE B2 -16 182 1 3 1376 248 292 21 0 chr12 103700216 103700312 -17557218 - L1M5 LINE L1 -733 5431 5334 3 1376 689 86 88 66 chr12 103700486 103700623 -17556907 + B2_Mm2 SINE B2 1 140 -55 3 1376 1182 48 12 12 chr12 103701582 103701752 -17555778 - B2_Mm2 SINE B2 -3 192 23 3 1376 237 208 0 0 chr12 103702288 103702336 -17555194 + B3A SINE B2 2 49 -149 3 1376 248 77 26 0 chr12 103702592 103702631 -17554899 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1376 499 219 34 73 chr12 103702968 103703145 -17554385 + B3 SINE B2 47 216 0 3 1376 723 165 62 8 chr12 103703364 103703492 -17554038 - B1_Mus1 SINE Alu -12 136 2 3 1376 297 75 0 0 chr12 103703537 103703577 -17553953 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1376 476 298 0 16 chr12 103703601 103703727 -17553803 - RSINE1 SINE B4 -41 124 1 3 1376 989 127 12 0 chr12 103703769 103703934 -17553596 + (TTTC)n Simple_repeat Simple_repeat 4 170 0 3 1376 588 95 0 0 chr12 103703935 103704019 -17553511 + (TTC)n Simple_repeat Simple_repeat 2 85 0 3 1376 819 85 116 0 chr12 103704022 103704151 -17553379 - B1_Mur4 SINE Alu -1 149 6 3 1376 349 291 142 47 chr12 103704176 103704319 -17553211 - L1M4b LINE L1 -5102 2232 2073 3 1376 1015 219 24 24 chr12 103704319 103704525 -17553005 - B3 SINE B2 -10 206 1 3 1376 349 291 142 47 chr12 103704525 103704698 -17552832 - L1M4b LINE L1 -5262 2072 1886 3 1376 357 185 49 0 chr12 103704711 103704792 -17552738 - MTEa LTR MaLR -2 377 293 3 1376 385 118 29 0 chr12 103704811 103704879 -17552651 - MTD LTR MaLR -10 409 340 3 1376 798 266 9 24 chr12 103704879 103705091 -17552439 - ID_B1 SINE B4 -14 210 2 3 1376 198 194 0 0 chr12 103705956 103705992 -17551538 + MIRc SINE MIR 100 135 -133 3 1376 342 230 23 0 chr12 103706365 103706452 -17551078 - Lx2B LINE L1 0 7000 6912 3 1376 1023 89 140 51 chr12 103706464 103706642 -17550888 - B2_Mm2 SINE B2 0 195 2 3 1376 382 68 0 0 chr12 103706647 103706706 -17550824 - Lx LINE L1 -1 6653 6595 4 1376 1869 17 76 17 chr12 103706706 103706943 -17550587 - L1Md_F2 LINE L1 -12 6570 6320 4 1376 342 0 0 0 chr12 103706962 103707000 -17550530 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1376 28 0 0 0 chr12 103707352 103707380 -17550150 + GC_rich Low_complexity Low_complexity 1 28 0 4 1376 203 120 59 20 chr12 103708323 103708374 -17549156 + (TTATA)n Simple_repeat Simple_repeat 4 56 0 4 1376 904 160 0 7 chr12 103708974 103709119 -17548411 - B1_Mus1 SINE Alu -3 145 2 4 1376 185 100 50 0 chr12 103709171 103709211 -17548319 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 4 1376 371 261 83 8 chr12 103709305 103709425 -17548105 - MLT1B LTR MaLR 0 390 262 4 1376 311 340 21 14 chr12 103709452 103709595 -17547935 - RSINE1 SINE B4 -10 155 12 4 1376 467 254 165 16 chr12 103709587 103709743 -17547787 - MLT1B LTR MaLR -105 285 96 4 1376 1305 76 48 21 chr12 103709743 103709931 -17547599 - B2_Mm2 SINE B2 -1 194 2 4 1376 467 254 165 16 chr12 103709931 103710022 -17547508 - MLT1B LTR MaLR -295 95 1 4 1376 361 22 0 0 chr12 103710085 103710131 -17547399 - B2_Mm1t SINE B2 -147 46 1 4 1376 458 103 25 25 chr12 103710972 103711052 -17546478 + B1_Mur4 SINE Alu 71 150 0 4 1376 572 260 48 0 chr12 103711403 103711549 -17545981 - RSINE1 SINE B4 -5 160 8 4 1376 376 272 39 0 chr12 103711736 103711839 -17545691 - B1F1 SINE Alu -40 109 3 4 1376 957 209 54 15 chr12 103711969 103712173 -17545357 + B3 SINE B2 4 215 -1 4 1376 658 119 9 27 chr12 103712411 103712523 -17545007 + B1_Mur4 SINE Alu 41 150 0 4 1376 27 0 0 0 chr12 103713111 103713138 -17544392 + AT_rich Low_complexity Low_complexity 1 27 0 4 1376 1398 61 16 16 chr12 103713313 103713496 -17544034 - B2_Mm2 SINE B2 -11 184 2 4 1376 22 0 0 0 chr12 103713700 103713722 -17543808 + AT_rich Low_complexity Low_complexity 1 22 0 4 1376 767 250 18 49 chr12 103713725 103713948 -17543582 + B3 SINE B2 1 216 0 4 1376 21 0 0 0 chr12 103714984 103715005 -17542525 + AT_rich Low_complexity Low_complexity 1 21 0 4 1376 21 0 0 0 chr12 103715399 103715420 -17542110 + AT_rich Low_complexity Low_complexity 1 21 0 4 1376 306 231 143 23 chr12 103715504 103715552 -17541978 - B2_Mm2 SINE B2 0 195 142 4 1376 1316 103 11 0 chr12 103715552 103715736 -17541794 + B2_Mm1t SINE B2 1 186 -7 4 1376 1646 27 5 0 chr12 103715745 103715933 -17541597 + B2_Mm1a SINE B2 2 190 -3 4 1376 306 231 143 23 chr12 103715933 103716007 -17541523 - B2_Mm2 SINE B2 -69 126 50 4 1376 1288 102 23 0 chr12 103716058 103716235 -17541295 - B2_Mm2 SINE B2 -14 181 1 4 1376 790 163 89 0 chr12 103716240 103716375 -17541155 - B1_Mus2 SINE Alu 0 147 1 4 1376 603 178 14 65 chr12 103716439 103716577 -17540953 - B1_Mur2 SINE Alu 0 147 17 4 1376 688 243 25 54 chr12 103716737 103716976 -17540554 - Charlie5 DNA MER1_type -145 2479 2248 4 1376 486 271 48 52 chr12 103716977 103717226 -17540304 + L1MB7 LINE L1 5582 5829 -355 4 1376 621 266 99 10 chr12 103717226 103717427 -17540103 + B4A SINE B4 1 219 -73 4 1376 232 214 139 90 chr12 103719982 103720126 -17537404 + MT2B2 LTR ERVL 114 264 -320 4 1376 957 25 0 0 chr12 103720039 103720161 -17537369 + B1_Mus1 SINE Alu 27 148 0 4 1376 964 86 65 7 chr12 103720577 103720730 -17536800 + B2_Mm2 SINE B2 3 164 -31 4 1376 360 185 73 15 chr12 103720777 103720914 -17536616 + GA-rich Low_complexity Low_complexity 2 146 0 4 1376 999 94 212 0 chr12 103720951 103721111 -17536419 + B2_Mm2 SINE B2 2 195 0 4 1376 467 308 111 21 chr12 103721270 103721459 -17536071 - MER58C DNA MER1_type 0 215 10 4 1376 342 324 0 9 chr12 103721589 103721695 -17535835 + PB1D10 SINE Alu 13 117 0 4 1376 22 35 0 0 chr12 103722319 103722348 -17535182 + AT_rich Low_complexity Low_complexity 1 29 0 4 1376 660 240 158 0 chr12 103722370 103722553 -17534977 + B3 SINE B2 5 216 0 4 1376 1187 55 7 7 chr12 103723040 103723187 -17534343 + B1_Mus2 SINE Alu 1 147 0 4 1376 1328 95 16 5 chr12 103723291 103723482 -17534048 - B2_Mm1t SINE B2 0 193 1 4 1376 322 206 14 14 chr12 103723603 103723672 -17533858 + ID4_ SINE ID 5 73 -10 4 1376 375 293 120 0 chr12 103724049 103724182 -17533348 + RSINE1 SINE B4 2 150 -15 4 1376 245 314 178 0 chr12 103724277 103724395 -17533135 - MIRb SINE MIR -15 253 115 4 1376 788 191 13 13 chr12 103724745 103724894 -17532636 - B1_Mur3 SINE Alu 0 149 1 4 1376 227 172 15 59 chr12 103725570 103725638 -17531892 + (TTTG)n Simple_repeat Simple_repeat 4 68 0 4 1376 333 307 15 45 chr12 103725675 103725808 -17531722 - RSINE1 SINE B4 -16 149 21 4 1376 630 145 40 71 chr12 103725856 103725982 -17531548 - B1_Mur2 SINE Alu -1 148 27 4 1376 881 184 50 6 chr12 103726090 103726270 -17531260 - B2_Mm2 SINE B2 -7 188 1 4 1376 1045 79 0 0 chr12 103726303 103726430 -17531100 - B1_Mus2 SINE Alu -19 128 2 4 1376 1086 64 50 0 chr12 103726881 103727021 -17530509 + B1_Mus2 SINE Alu 1 147 0 4 1376 30 27 0 0 chr12 103727250 103727287 -17530243 + AT_rich Low_complexity Low_complexity 1 37 0 4 1376 1155 50 0 0 chr12 103728076 103728215 -17529315 + B1_Mus1 SINE Alu 1 139 -9 4 1376 698 233 0 0 chr12 103728400 103728516 -17529014 - B1_Mur1 SINE Alu -32 117 2 4 1376 398 260 14 115 chr12 103728516 103728547 -17528983 - MT2B LTR ERVL -446 155 139 4 1376 293 226 75 0 chr12 103728601 103728694 -17528836 + L1M5 LINE L1 5083 5182 -964 4 1376 475 187 8 108 chr12 103729049 103729169 -17528361 - PB1D10 SINE Alu -1 116 9 4 1376 236 246 43 14 chr12 103729260 103729330 -17528200 + L1M5 LINE L1 5709 5780 -384 4 1376 1169 177 33 23 chr12 103729344 103729558 -17527972 + B3 SINE B2 1 216 0 4 1376 472 250 113 8 chr12 103729851 103729984 -17527546 + B1F1 SINE Alu 1 147 -2 4 1376 195 385 42 36 chr12 103730961 103731128 -17526402 - L2a LINE L2 -198 3228 3061 4 1376 232 293 52 26 chr12 103731257 103731334 -17526196 + ID4 SINE ID 5 83 0 4 1376 640 269 133 38 chr12 103731364 103731657 -17525873 - L2a LINE L2 -652 2767 2447 4 1376 21 36 0 0 chr12 103732310 103732338 -17525192 + GC_rich Low_complexity Low_complexity 1 28 0 4 1376 701 187 8 8 chr12 103732338 103732462 -17525068 - B1_Mus1 SINE Alu -5 143 20 4 1376 313 236 65 33 chr12 103732489 103732581 -17524949 + PB1 SINE Alu 27 121 -6 4 1376 675 120 0 0 chr12 103733089 103733197 -17524333 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 1376 996 98 0 0 chr12 103733296 103733500 -17524030 + (TTCC)n Simple_repeat Simple_repeat 1 204 0 4 1376 435 181 127 45 chr12 103733524 103733634 -17523896 - PB1D9 SINE Alu 0 120 2 4 1376 1212 55 0 0 chr12 103734211 103734357 -17523173 - B1_Mus2 SINE Alu 0 147 2 4 1376 2067 87 17 7 chr12 103734801 103735101 -17522429 - ORR1A3 LTR MaLR -23 303 1 4 1376 204 280 190 0 chr12 103735502 103735602 -17521928 - L2b LINE L2 -2 3373 3255 4 1376 21 57 0 0 chr12 103736086 103736121 -17521409 + AT_rich Low_complexity Low_complexity 1 35 0 4 1376 1241 48 0 0 chr12 103738343 103738488 -17519042 + B1_Mus2 SINE Alu 3 147 0 4 1376 207 69 0 0 chr12 103738488 103738517 -17519013 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1376 1071 63 0 20 chr12 103738534 103738680 -17518850 + B1_Mus1 SINE Alu 6 148 0 4 1376 369 109 0 0 chr12 103738951 103739006 -17518524 + (T)n Simple_repeat Simple_repeat 1 55 0 4 1376 1108 43 57 14 chr12 103739006 103739147 -17518383 - B1_Mus2 SINE Alu 0 147 1 4 1376 847 260 150 25 chr12 103739229 103739556 -17517974 - ORR1D2 LTR MaLR -2 368 1 4 1376 23 43 0 21 chr12 103739581 103739598 -17517932 + AT_rich Low_complexity Low_complexity 1 17 0 4 1376 3901 25 0 2 chr12 103739598 103740044 -17517486 - L1Md_F2 LINE L1 -5 6577 6133 4 1376 23 43 0 21 chr12 103740044 103740074 -17517456 + AT_rich Low_complexity Low_complexity 1 30 0 4 1376 197 204 45 0 chr12 103740168 103740212 -17517318 - L2b LINE L2 -97 3278 3233 4 1376 341 115 100 25 chr12 103740711 103740791 -17516739 - MTEb LTR MaLR -30 349 264 4 1376 558 232 136 26 chr12 103741484 103741639 -17515891 + B3A SINE B2 1 172 -44 4 1376 249 136 30 15 chr12 103741639 103741706 -17515824 + GA-rich Low_complexity Low_complexity 1 68 0 4 1376 248 294 0 0 chr12 103741733 103741784 -17515746 + ID4 SINE ID 3 53 -30 4 1376 801 89 0 0 chr12 103741864 103741976 -17515554 - B2_Mm1a SINE B2 0 193 82 4 1376 412 280 72 67 chr12 103741977 103742016 -17515514 - B3A SINE B2 -1 197 163 4 1376 1397 61 67 0 chr12 103742016 103742196 -17515334 + B2_Mm2 SINE B2 3 194 -1 4 1376 412 280 72 67 chr12 103742196 103742351 -17515179 - B3A SINE B2 -36 162 2 4 1376 2920 134 155 43 chr12 103742386 103742923 -17514607 - MT2B LTR ERVL -4 597 1 4 1376 316 243 57 28 chr12 103743014 103743120 -17514410 - MLT1A0 LTR MaLR -240 125 17 4 1376 589 177 18 10 chr12 103743371 103743504 -17514026 - RMER17C LTR ERVK -313 97 1 4 1376 1232 158 17 35 chr12 103743807 103744037 -17513493 + URR1A DNA MER1_type 1 226 0 4 1376 1319 150 14 5 chr12 103744443 103744651 -17512879 - URR1B DNA MER1_type -1 224 15 4 1376 351 0 0 0 chr12 103744668 103744707 -17512823 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 1376 333 0 0 0 chr12 103744707 103744743 -17512787 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1376 308 344 0 0 chr12 103745017 103745129 -17512401 + ID4 SINE ID 2 113 -39 4 1376 700 223 23 0 chr12 103745207 103745337 -17512193 - B4A SINE B4 -18 274 142 4 1376 858 270 89 61 chr12 103745460 103745554 -17511976 + B4A SINE B4 5 98 -194 4 1376 387 0 0 0 chr12 103745554 103745597 -17511933 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1376 858 270 89 61 chr12 103745597 103745782 -17511748 + B4A SINE B4 99 291 -1 4 1376 226 314 0 69 chr12 103745721 103745793 -17511737 + B3A SINE B2 116 182 -16 4 1376 1251 196 28 28 chr12 103746019 103746266 -17511264 - MTD LTR MaLR -148 271 25 5 1376 621 200 79 8 chr12 103747455 103747581 -17509949 - RSINE1 SINE B4 -15 150 16 5 1376 280 298 187 45 chr12 103748065 103748332 -17509198 - MLT1H LTR MaLR -3 546 242 5 1376 602 169 8 0 chr12 103748422 103748540 -17508990 + CT-rich Low_complexity Low_complexity 3 121 0 5 1376 667 239 49 43 chr12 103748573 103748735 -17508795 - RSINE1 SINE B4 0 165 3 5 1376 435 296 60 71 chr12 103750148 103750411 -17507119 + B4 SINE B4 49 292 0 5 1376 1846 180 41 11 chr12 103750459 103750824 -17506706 + RMER20A LTR ERVK 1 376 -140 5 1376 410 265 52 7 chr12 103750978 103751093 -17506437 + PB1D10 SINE Alu 21 146 -1 5 1376 346 234 0 80 chr12 103751150 103751238 -17506292 + B4 SINE B4 72 152 -140 5 1376 363 244 0 75 chr12 103751161 103751173 -17506357 + MT2B LTR ERVL 155 159 -442 5 1376 569 146 11 0 chr12 103751173 103751262 -17506268 + B1_Mm SINE Alu 3 92 -55 5 1376 381 296 153 29 chr12 103751344 103751553 -17505977 + L1MC1 LINE L1 6025 6259 -74 5 1376 1101 95 0 7 chr12 103751725 103751873 -17505657 - B1_Mus1 SINE Alu 0 148 2 5 1376 561 281 174 4 chr12 103751943 103752190 -17505340 - MT2A LTR ERVL 0 533 245 5 1376 314 263 40 0 chr12 103752270 103752346 -17505184 - MTB_Mm LTR MaLR -328 79 1 5 1376 506 233 155 12 chr12 103752966 103753127 -17504403 - B3A SINE B2 -14 184 1 5 1376 677 271 103 12 chr12 103753139 103753382 -17504148 - L1MA5 LINE L1 -360 5940 5676 5 1376 973 126 13 22 chr12 103753477 103753925 -17503605 + (CATA)n Simple_repeat Simple_repeat 1 444 0 5 1376 1126 91 23 0 chr12 103753937 103754113 -17503417 + (CATA)n Simple_repeat Simple_repeat 1 180 0 5 1376 652 299 0 6 chr12 103754139 103754317 -17503213 + B3A SINE B2 3 179 -19 5 1376 222 37 0 0 chr12 103754346 103754373 -17503157 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1376 273 179 36 0 chr12 103754708 103754764 -17502766 + L1MC2 LINE L1 6271 6328 -16 5 1376 1239 55 0 0 chr12 103755480 103755626 -17501904 - B1_Mus2 SINE Alu 0 147 2 5 1376 970 142 14 0 chr12 103755640 103755788 -17501742 + B1_Mur4 SINE Alu 1 150 0 5 1376 1339 79 10 21 chr12 103756455 103756649 -17500881 - B2_Mm1t SINE B2 0 193 2 5 1376 230 138 0 44 chr12 103756660 103756728 -17500802 + T-rich Low_complexity Low_complexity 1 65 0 5 1376 314 261 252 0 chr12 103756977 103757096 -17500434 - L1MB2 LINE L1 -246 5925 5777 5 1376 1325 45 86 38 chr12 103757160 103757346 -17500184 - B2_Mm2 SINE B2 0 195 1 5 1376 296 64 0 21 chr12 103757361 103757409 -17500121 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1376 3626 24 9 7 chr12 103757409 103757837 -17499693 - L1Md_F2 LINE L1 -6 6576 6148 5 1376 288 27 0 0 chr12 103757837 103757874 -17499656 - B2_Mm1t SINE B2 -156 37 1 5 1376 4437 127 86 78 chr12 103757882 103758751 -17498779 - RMER19B LTR ERVK -26 876 1 5 1376 369 286 0 0 chr12 103758946 103759023 -17498507 - B4 SINE B4 0 292 216 5 1376 267 31 0 0 chr12 103759036 103759068 -17498462 + (GTTTG)n Simple_repeat Simple_repeat 1 32 0 5 1376 749 194 0 0 chr12 103759069 103759198 -17498332 - B1_Mus1 SINE Alu -19 129 1 5 1376 405 164 18 2 chr12 103759225 103759301 -17498229 - B3A SINE B2 -108 85 9 5 1376 862 176 0 0 chr12 103759442 103759584 -17497946 - B1_Mur1 SINE Alu -6 143 2 5 1376 242 269 83 37 chr12 103759697 103759805 -17497725 - L1MC4 LINE L1 -171 7871 7759 5 1376 1052 208 19 34 chr12 103760815 103761024 -17496506 + B3 SINE B2 1 206 -10 5 1376 1254 47 0 0 chr12 103761197 103761345 -17496185 - B1_Mus1 SINE Alu 0 148 1 5 1376 343 236 11 0 chr12 103761458 103761547 -17495983 - L1_Rod LINE L1 -600 5247 5158 5 1376 711 226 6 34 chr12 103761547 103761737 -17495793 - B3 SINE B2 -1 194 18 5 1376 521 295 44 111 chr12 103761904 103762129 -17495401 + B4A SINE B4 2 211 -81 5 1376 663 232 25 54 chr12 103762147 103762297 -17495233 + B3A SINE B2 4 151 -47 5 1376 486 0 0 0 chr12 103762300 103762354 -17495176 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1376 312 186 171 23 chr12 103762424 103762512 -17495018 + L1MCa LINE L1 1899 1999 -4509 5 1376 186 149 18 161 chr12 103763269 103763325 -17494205 + MIR SINE MIR 31 78 -130 5 1376 281 329 0 0 chr12 103763398 103763471 -17494059 + MIRb SINE MIR 56 128 -140 5 1376 758 274 92 4 chr12 103764970 103765241 -17492289 + MLT1D LTR MaLR 211 505 0 5 1376 547 262 115 15 chr12 103765605 103765773 -17491757 + B3A SINE B2 2 184 -9 5 1376 1368 65 26 36 chr12 103765836 103766029 -17491501 + B2_Mm2 SINE B2 2 192 -3 5 1376 242 304 32 35 chr12 103766382 103766550 -17490980 - L2b LINE L2 -288 3099 2933 5 1376 793 246 24 91 chr12 103767787 103767997 -17489533 - MTE2a LTR MaLR -183 196 1 5 1376 231 277 83 135 chr12 103768193 103768289 -17489241 + MLT1A0 LTR MaLR 151 241 -133 5 1376 727 259 27 0 chr12 103768240 103768387 -17489143 + RSINE1 SINE B4 15 165 0 5 1376 372 43 0 0 chr12 103768405 103768451 -17489079 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1376 252 0 0 0 chr12 103768453 103768481 -17489049 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 5 1376 345 312 11 21 chr12 103768490 103768585 -17488945 + MLT1A0 LTR MaLR 199 292 -73 5 1376 7027 53 5 2 chr12 103768590 103769494 -17488036 - L1Md_F2 LINE L1 0 6582 5716 5 1376 4434 33 0 0 chr12 103769489 103769999 -17487531 + L1Md_F2 LINE L1 5219 5728 -155 5 1376 38 22 0 0 chr12 103770185 103770230 -17487300 + AT_rich Low_complexity Low_complexity 1 45 0 5 1376 898 245 55 0 chr12 103770236 103770436 -17487094 - B3 SINE B2 0 216 6 5 1376 335 48 0 61 chr12 103771209 103771275 -17486255 + (TCCC)n Simple_repeat Simple_repeat 2 63 0 5 1376 651 223 22 12 chr12 103771361 103771511 -17486019 - ID_B1 SINE B4 -71 221 74 5 1376 195 129 0 0 chr12 103771619 103771650 -17485880 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1376 482 295 0 0 chr12 103771661 103771766 -17485764 - RSINE1 SINE B4 -58 107 3 5 1376 660 140 17 34 chr12 103771781 103771916 -17485614 - B1_Mur4 SINE Alu -1 149 17 5 1376 276 319 160 31 chr12 103771962 103772156 -17485374 + MLT1F LTR MaLR 89 307 -241 5 1376 2617 161 0 19 chr12 103772730 103773159 -17484371 + MTC LTR MaLR 1 421 0 5 1376 2110 193 41 81 chr12 103773388 103773737 -17483793 + RLTR20A LTR ERVK 1 347 -194 5 1376 1271 124 10 5 chr12 103773737 103773931 -17483599 + B2_Mm2 SINE B2 1 195 0 5 1376 243 0 0 0 chr12 103773936 103773963 -17483567 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 1376 2110 193 41 81 chr12 103773963 103774166 -17483364 + RLTR20A LTR ERVK 348 537 -4 5 1376 354 258 11 11 chr12 103774284 103774378 -17483152 + ORR1E LTR MaLR 53 146 -213 5 1376 324 120 0 0 chr12 103774381 103774431 -17483099 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 5 1376 1118 89 0 7 chr12 103774431 103774578 -17482952 - B1_Mus2 SINE Alu 0 147 2 5 1376 278 261 211 23 chr12 103774602 103774735 -17482795 + ORR1E LTR MaLR 197 354 -25 5 1376 960 9 0 0 chr12 103774735 103774844 -17482686 + (GAA)n Simple_repeat Simple_repeat 3 111 0 5 1376 1175 120 18 17 chr12 103774868 103775087 -17482443 - LTRIS5 LTR ERV1 0 512 228 5 1376 493 58 349 0 chr12 103775105 103775191 -17482339 - LTRIS5 LTR ERV1 -331 116 1 5 1376 477 136 0 0 chr12 103775571 103775674 -17481856 + (GA)n Simple_repeat Simple_repeat 1 103 0 5 1376 797 269 0 6 chr12 103775682 103775854 -17481676 - B3A SINE B2 -27 171 1 5 1376 230 316 31 10 chr12 103775901 103775997 -17481533 - MIRb SINE MIR -136 132 35 5 1376 357 287 10 10 chr12 103777794 103777896 -17479634 - MLT1I LTR MaLR -227 184 83 5 1376 410 328 96 15 chr12 103778117 103778315 -17479215 - LTR16E1 LTR ERVL -3 535 322 5 1376 327 65 0 0 chr12 103779411 103779457 -17478073 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1376 257 183 100 0 chr12 103779592 103779652 -17477878 - MTE2a LTR MaLR 0 379 314 5 1376 339 85 0 0 chr12 103779669 103779716 -17477814 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1376 3996 208 57 16 chr12 103779734 103780007 -17477523 + Lx5 LINE L1 6143 6443 -607 5 1376 1686 178 86 13 chr12 103780007 103780191 -17477339 + RMER17C LTR ERVK 1 207 -203 5 1376 1295 27 0 0 chr12 103780191 103780338 -17477192 - B1_Mm SINE Alu 0 147 1 5 1376 1686 178 86 13 chr12 103780338 103780535 -17476995 + RMER17C LTR ERVK 208 410 0 5 1376 3996 208 57 16 chr12 103780535 103781100 -17476430 + Lx5 LINE L1 6444 7016 -34 5 1376 234 91 0 0 chr12 103781107 103781140 -17476390 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 5 1376 467 294 74 115 chr12 103781145 103781259 -17476271 - MTE2a LTR MaLR -44 335 202 5 1376 957 234 60 0 chr12 103781259 103781460 -17476070 + B3 SINE B2 1 213 -3 5 1376 417 39 0 0 chr12 103781462 103781513 -17476017 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1376 467 281 56 96 chr12 103781513 103781731 -17475799 - MTE2a LTR MaLR -178 201 46 5 1376 3354 112 113 51 chr12 103781731 103782297 -17475233 + MT2B LTR ERVL 1 601 0 5 1376 355 258 23 62 chr12 103782297 103782344 -17475186 - MTE2a LTR MaLR -374 45 1 5 1376 1010 254 50 86 chr12 103782770 103782813 -17474717 - B4 SINE B4 0 292 270 5 1376 359 89 0 18 chr12 103782813 103782870 -17474660 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1376 1010 254 50 86 chr12 103782870 103783128 -17474402 - B4 SINE B4 -23 269 2 5 1376 222 283 207 23 chr12 103784327 103784544 -17472986 + MIRb SINE MIR 4 260 -8 5 1376 215 343 32 29 chr12 103785276 103785398 -17472132 + MIRc SINE MIR 36 153 -123 5 1376 383 280 44 15 chr12 103785630 103785783 -17471747 - PB1D10 SINE Alu 0 149 14 5 1376 1165 94 12 0 chr12 103786014 103786184 -17471346 + B2_Mm2 SINE B2 2 173 -22 5 1376 576 0 0 0 chr12 103786269 103786333 -17471197 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 5 1376 23 33 0 0 chr12 103786780 103786810 -17470720 + AT_rich Low_complexity Low_complexity 1 30 0 5 1376 1078 147 24 42 chr12 103786810 103787023 -17470507 - Lx4A LINE L1 0 7058 6850 5 1376 441 231 90 52 chr12 103787032 103787205 -17470325 - B3A SINE B2 0 198 20 5 1376 338 42 21 0 chr12 103787205 103787253 -17470277 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1376 521 42 0 27 chr12 103787261 103787334 -17470196 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 6 1376 781 189 28 0 chr12 103787334 103787477 -17470053 - B1_Mur3 SINE Alu -1 148 2 6 1376 197 207 12 35 chr12 103787652 103787737 -17469793 + (TTAA)n Simple_repeat Simple_repeat 4 86 0 6 1376 244 329 12 3 chr12 103787753 103787843 -17469687 - B1F SINE Alu -52 97 9 6 1376 187 308 0 0 chr12 103787868 103787920 -17469610 - MIR SINE MIR -98 110 59 6 1376 183 42 0 0 chr12 103787924 103787948 -17469582 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1376 322 346 0 9 chr12 103787971 103788076 -17469454 + PB1D10 SINE Alu 1 104 -13 6 1376 516 105 0 0 chr12 103788076 103788152 -17469378 + (CAG)n Simple_repeat Simple_repeat 1 76 0 6 1376 624 286 125 12 chr12 103788152 103788400 -17469130 + L1M2 LINE L1 4740 5015 -1128 6 1376 619 268 17 5 chr12 103788413 103788580 -17468950 + ID_B1 SINE B4 56 218 -6 6 1376 186 133 0 0 chr12 103788784 103788814 -17468716 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 6 1376 385 359 59 54 chr12 103789858 103790422 -17467108 + L2a LINE L2 2810 3425 -1 6 1376 31 44 0 0 chr12 103791231 103791276 -17466254 + AT_rich Low_complexity Low_complexity 1 45 0 6 1376 195 42 0 0 chr12 103791346 103791370 -17466160 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 1376 768 185 15 7 chr12 103791370 103791506 -17466024 - B1_Mur2 SINE Alu -12 137 1 6 1376 520 276 191 53 chr12 103791776 103792154 -17465376 + L2a LINE L2 2993 3422 -4 6 1376 271 248 116 27 chr12 103792896 103793008 -17464522 - MIRb SINE MIR -125 143 22 6 1376 202 231 0 0 chr12 103793119 103793158 -17464372 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1376 266 304 0 0 chr12 103793176 103793232 -17464298 + (CCG)n Simple_repeat Simple_repeat 3 58 0 6 1376 336 24 0 0 chr12 103794050 103794091 -17463439 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1376 275 164 0 16 chr12 103794773 103794826 -17462704 + (TCTCTG)n Simple_repeat Simple_repeat 6 58 0 6 1376 234 0 0 0 chr12 103794826 103794852 -17462678 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 6 1376 275 164 0 16 chr12 103794852 103794860 -17462670 + (TCTCTG)n Simple_repeat Simple_repeat 4 11 0 6 1376 1391 90 21 0 chr12 103794861 103795050 -17462480 - B2_Mm2 SINE B2 -1 194 2 6 1376 732 54 0 0 chr12 103795050 103795143 -17462387 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 6 1376 734 176 8 0 chr12 103795143 103795268 -17462262 - B1_Mur2 SINE Alu -12 137 12 6 1376 287 294 15 92 chr12 103795158 103795289 -17462241 - MT2B LTR ERVL -325 276 156 6 1376 1212 48 0 7 chr12 103795311 103795459 -17462071 - B1_Mus2 SINE Alu 0 147 1 6 1376 408 221 12 0 chr12 103795899 103795985 -17461545 - MIRc SINE MIR -103 165 79 6 1376 419 0 20 0 chr12 103796454 103796505 -17461025 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1376 209 337 60 20 chr12 103797701 103797801 -17459729 - MIRb SINE MIR -116 152 49 6 1376 554 126 324 0 chr12 103797993 103798104 -17459426 + B1_Mus1 SINE Alu 1 147 -1 6 1376 297 128 0 0 chr12 103798151 103798198 -17459332 + (GAAA)n Simple_repeat Simple_repeat 3 49 0 6 1376 352 287 11 0 chr12 103798304 103798398 -17459132 - ID_B1 SINE B4 -128 96 2 6 1376 403 242 53 0 chr12 103798489 103798584 -17458946 - PB1D10 SINE Alu -13 104 5 6 1376 464 95 12 0 chr12 103799571 103799655 -17457875 + (CAG)n Simple_repeat Simple_repeat 1 85 0 6 1376 195 129 0 0 chr12 103800166 103800197 -17457333 + (GGA)n Simple_repeat Simple_repeat 2 32 0 6 1376 379 266 21 7 chr12 103800433 103800549 -17456981 - MIRb SINE MIR -140 128 12 6 1376 192 77 0 0 chr12 103800990 103801016 -17456514 + (GGA)n Simple_repeat Simple_repeat 3 28 0 6 1376 390 275 55 40 chr12 103801728 103801895 -17455635 + MIR3 SINE MIR 5 176 -92 6 1376 207 387 32 0 chr12 103802656 103802749 -17454781 - MIRc SINE MIR -108 160 65 6 1376 191 273 91 0 chr12 103803358 103803424 -17454106 + MIRc SINE MIR 94 165 -103 6 1376 757 133 124 8 chr12 103803835 103803964 -17453566 - B1_Mus1 SINE Alu 0 148 5 6 1376 793 184 139 10 chr12 103803984 103804183 -17453347 - B3 SINE B2 0 216 6 6 1376 1153 83 53 18 chr12 103805660 103805804 -17451726 + B2_Mm2 SINE B2 2 148 -47 6 1376 450 94 0 0 chr12 103805804 103805868 -17451662 + (CTA)n Simple_repeat Simple_repeat 2 65 0 6 1376 1153 83 53 18 chr12 103805868 103805894 -17451636 + B2_Mm2 SINE B2 149 178 -17 6 1376 639 279 65 43 chr12 103805955 103806187 -17451343 - B4A SINE B4 -55 237 1 6 1376 378 42 0 0 chr12 103808004 103808052 -17449478 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1377 252 266 30 93 chr12 103811261 103811274 -17446256 - ID_B1 SINE B4 -31 193 142 6 1377 349 230 125 11 chr12 103811274 103811362 -17446168 - PB1D10 SINE Alu -14 103 6 6 1377 252 266 30 93 chr12 103811362 103811374 -17446156 - ID_B1 SINE B4 -31 141 83 6 1377 203 303 111 11 chr12 103811731 103811821 -17445709 + MIR3 SINE MIR 85 183 -25 6 1377 204 319 88 9 chr12 103812960 103813074 -17444456 + MIR SINE MIR 51 173 -89 6 1377 368 284 120 8 chr12 103813258 103813375 -17444155 + RSINE1 SINE B4 3 132 -33 6 1377 232 302 111 0 chr12 103813404 103813530 -17444000 + L1MB5 LINE L1 5588 5727 -453 6 1377 372 316 142 67 chr12 103813547 103813867 -17443663 + L1MB5 LINE L1 5758 6125 -49 6 1377 737 198 256 0 chr12 103813867 103814039 -17443491 + B3 SINE B2 1 216 0 6 1377 372 316 142 67 chr12 103814039 103814105 -17443425 + L1MB5 LINE L1 6126 6173 -1 6 1377 386 224 109 27 chr12 103814116 103814226 -17443304 + PB1D9 SINE Alu 2 120 0 6 1377 2095 163 58 5 chr12 103814231 103814608 -17442922 + MTC LTR MaLR 21 417 -4 6 1377 213 272 116 4 chr12 103815395 103815508 -17442022 - MIR SINE MIR -105 163 38 6 1377 333 0 0 0 chr12 103815528 103815565 -17441965 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1377 290 267 159 51 chr12 103816316 103816454 -17441076 + RSINE1 SINE B4 3 155 -10 6 1377 498 144 33 0 chr12 103816624 103816714 -17440816 + PB1D9 SINE Alu 1 93 -27 6 1377 643 146 49 0 chr12 103820236 103820359 -17437171 - URR1A DNA MER1_type -27 199 71 6 1377 225 0 0 0 chr12 103821115 103821140 -17436390 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 6 1377 648 0 0 0 chr12 103822281 103822353 -17435177 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 6 1377 282 148 0 0 chr12 103824004 103824058 -17433472 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 6 1377 233 279 0 0 chr12 103824443 103824504 -17433026 + (CATG)n Simple_repeat Simple_repeat 4 64 0 6 1377 594 0 0 0 chr12 103826150 103826216 -17431314 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1377 274 288 55 0 chr12 103826300 103826373 -17431157 - 5S rRNA rRNA -32 89 13 6 1377 21 0 0 0 chr12 103827477 103827498 -17430032 + AT_rich Low_complexity Low_complexity 1 21 0 6 1377 1038 141 0 0 chr12 103827498 103827647 -17429883 + B1_Mur3 SINE Alu 1 149 0 6 1377 700 248 0 0 chr12 103827675 103827824 -17429706 - RSINE1 SINE B4 -10 155 7 6 1377 1115 268 80 85 chr12 103829137 103829701 -17427829 + Lx8 LINE L1 6883 7443 -30 6 1377 209 205 0 0 chr12 103829810 103829849 -17427681 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1377 383 277 59 0 chr12 103830143 103830244 -17427286 + PB1D10 SINE Alu 5 111 -6 6 1377 503 324 25 53 chr12 103830398 103830507 -17427023 + Tigger7 DNA MER2_type 2285 2365 -126 6 1377 350 234 51 25 chr12 103830507 103830586 -17426944 - ID4_ SINE ID -2 81 1 6 1377 503 321 25 51 chr12 103830586 103830702 -17426828 + Tigger7 DNA MER2_type 2366 2476 -15 6 1377 807 227 85 5 chr12 103830768 103830967 -17426563 + B3 SINE B2 1 215 -1 6 1377 227 263 0 0 chr12 103833340 103833397 -17424133 + GA-rich Low_complexity Low_complexity 3 59 0 6 1377 195 359 68 0 chr12 103833700 103833817 -17423713 + MIR SINE MIR 35 159 -103 6 1377 694 216 169 64 chr12 103834100 103834353 -17423177 - B4A SINE B4 -14 278 3 6 1377 184 395 34 34 chr12 103834588 103834766 -17422764 + MIR SINE MIR 43 220 -42 6 1377 349 274 33 25 chr12 103835170 103835290 -17422240 + MLT1B LTR MaLR 49 169 -221 6 1377 277 284 0 47 chr12 103835297 103835382 -17422148 + PB1D10 SINE Alu 1 81 -36 6 1377 29 0 0 0 chr12 103835382 103835411 -17422119 + AT_rich Low_complexity Low_complexity 1 29 0 6 1377 1140 196 15 5 chr12 103836833 103837038 -17420492 + B3 SINE B2 4 210 -6 6 1377 185 336 159 16 chr12 103838256 103838485 -17419045 + MIR SINE MIR 1 237 -31 6 1377 364 259 99 26 chr12 103839527 103839678 -17417852 + MLT1J LTR MaLR 6 167 -345 6 1377 1342 143 36 23 chr12 103841144 103841365 -17416165 - URR1B DNA MER1_type -1 224 1 6 1377 181 289 132 11 chr12 103842142 103842233 -17415297 - MIRb SINE MIR -154 114 13 6 1377 387 0 0 0 chr12 103842894 103842937 -17414593 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1377 255 289 40 40 chr12 103843127 103843228 -17414302 + MLT1A1 LTR MaLR 307 407 -1 6 1377 666 205 71 0 chr12 103844937 103845064 -17412466 + B1_Mur3 SINE Alu 1 136 -13 6 1377 956 295 35 7 chr12 103845360 103845643 -17411887 + B4 SINE B4 2 292 0 6 1377 232 309 87 31 chr12 103845902 103846029 -17411501 + MLT1B LTR MaLR 1 134 -256 6 1377 879 264 214 12 chr12 103848075 103848423 -17409107 + MTD LTR MaLR 1 404 -15 6 1377 946 161 321 31 chr12 103852618 103852911 -17404619 - MTB_Mm LTR MaLR 0 421 44 6 1377 196 372 24 96 chr12 103853062 103853187 -17404343 + MIRm SINE MIR 161 276 0 6 1377 478 310 63 0 chr12 103853611 103853753 -17403777 + B3A SINE B2 1 151 -47 6 1377 336 48 0 0 chr12 103853759 103853801 -17403729 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1377 498 335 74 15 chr12 103853837 103854040 -17403490 + MER20 DNA MER1_type 1 215 -4 6 1377 342 231 0 0 chr12 103854113 103854178 -17403352 - PB1D10 SINE Alu -51 66 2 7 1377 254 274 206 0 chr12 103854216 103854245 -17403285 - PB1 SINE Alu -3 124 5 7 1377 358 243 0 0 chr12 103854245 103854315 -17403215 - ID_B1 SINE B4 -69 155 86 7 1377 609 178 0 0 chr12 103855811 103855963 -17401567 + (CA)n Simple_repeat Simple_repeat 2 153 0 7 1377 798 158 0 0 chr12 103855975 103856198 -17401332 + (CA)n Simple_repeat Simple_repeat 1 223 0 7 1377 247 231 151 19 chr12 103856198 103856304 -17401226 - MIR SINE MIR -20 242 123 7 1377 807 209 7 0 chr12 103857496 103857644 -17399886 + B1_Mur2 SINE Alu 1 149 0 7 1377 347 73 18 0 chr12 103857644 103857699 -17399831 + (CAGA)n Simple_repeat Simple_repeat 2 57 0 7 1377 534 119 0 0 chr12 103857713 103857797 -17399733 + (GA)n Simple_repeat Simple_repeat 2 85 0 7 1377 542 242 63 16 chr12 103857805 103857931 -17399599 + B4 SINE B4 93 224 -68 7 1377 839 236 120 5 chr12 103859083 103859275 -17398255 + B3 SINE B2 2 215 -1 7 1377 1436 232 49 11 chr12 103859455 103859804 -17397726 + ORR1D2 LTR MaLR 1 362 -8 7 1377 257 226 19 0 chr12 103860210 103860263 -17397267 + MIRc SINE MIR 115 168 -100 7 1377 294 319 49 49 chr12 103862901 103863125 -17394405 + LTR33 LTR ERVL 275 498 -17 7 1377 902 98 266 0 chr12 103864341 103864484 -17393046 - B2_Mm2 SINE B2 -14 181 1 7 1377 544 196 0 9 chr12 103864493 103864601 -17392929 - B1_Mur4 SINE Alu -5 145 39 7 1377 392 264 17 2 chr12 103864601 103864712 -17392818 - PB1D7 SINE Alu -22 127 10 7 1377 270 333 0 0 chr12 103865535 103865616 -17391914 + MIRc SINE MIR 101 181 -87 7 1377 1336 82 43 21 chr12 103865629 103865816 -17391714 - B2_Mm2 SINE B2 -4 191 1 7 1377 180 281 0 34 chr12 103866656 103866715 -17390815 - MIR SINE MIR -125 137 81 7 1377 1020 8 30 0 chr12 103867773 103867904 -17389626 - ORR1A1 LTR MaLR 0 346 212 7 1377 4428 72 50 5 chr12 103867895 103868586 -17388944 - ORR1A1-int LTR MaLR -561 1231 520 7 1377 1268 67 0 115 chr12 103868598 103868689 -17388841 - ORR1A1 LTR MaLR -153 193 127 7 1377 1186 48 14 0 chr12 103868689 103868834 -17388696 - B1_Mm SINE Alu 0 147 1 7 1377 1268 67 0 115 chr12 103868834 103868960 -17388570 - ORR1A1 LTR MaLR -220 126 1 7 1377 740 303 49 29 chr12 103869068 103869313 -17388217 + B4A SINE B4 7 256 -36 7 1377 432 51 0 0 chr12 103869637 103869696 -17387834 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1377 274 261 0 0 chr12 103871118 103871187 -17386343 - MIR SINE MIR -10 252 184 7 1377 187 272 48 36 chr12 103871290 103871374 -17386156 + MIRc SINE MIR 96 180 -88 7 1377 3019 80 53 51 chr12 103873152 103873626 -17383904 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1377 561 265 77 149 chr12 103873709 103874099 -17383431 + MLT1C LTR MaLR 8 369 -98 7 1377 500 241 34 17 chr12 103874315 103874433 -17383097 + PB1D9 SINE Alu 1 120 0 7 1377 207 235 0 0 chr12 103874526 103874577 -17382953 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1377 589 208 275 18 chr12 103874629 103874800 -17382730 - B3 SINE B2 0 216 2 7 1377 897 162 0 13 chr12 103874832 103874967 -17382563 + B1_Mus1 SINE Alu 1 135 -13 7 1377 189 74 0 0 chr12 103874967 103874994 -17382536 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 7 1377 897 162 0 13 chr12 103874994 103875008 -17382522 + B1_Mus1 SINE Alu 136 147 -1 7 1377 1228 54 0 0 chr12 103875237 103875384 -17382146 + B1_Mus1 SINE Alu 2 148 0 7 1377 24 0 0 0 chr12 103877973 103877997 -17379533 + AT_rich Low_complexity Low_complexity 1 24 0 7 1377 25 0 0 0 chr12 103878006 103878031 -17379499 + AT_rich Low_complexity Low_complexity 1 25 0 7 1377 796 130 7 71 chr12 103879444 103879585 -17377945 + B1_Mur2 SINE Alu 1 132 -17 7 1377 1132 38 0 0 chr12 103880155 103880288 -17377242 + B1_Mus1 SINE Alu 4 136 -12 7 1377 190 293 0 17 chr12 103881291 103881350 -17376180 - MIRm SINE MIR -112 164 107 7 1377 1032 135 0 0 chr12 103883033 103883174 -17374356 + B1_Mus2 SINE Alu 2 142 -5 7 1377 21 0 0 0 chr12 103883178 103883199 -17374331 + AT_rich Low_complexity Low_complexity 1 21 0 7 1377 450 0 0 0 chr12 103883535 103883585 -17373945 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1377 186 339 34 34 chr12 103884886 103885005 -17372525 - MIR3 SINE MIR -51 157 39 7 1377 207 0 0 0 chr12 103885962 103885985 -17371545 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1377 489 17 0 0 chr12 103886964 103887022 -17370508 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1377 245 291 58 11 chr12 103887137 103887224 -17370306 + MLT1B LTR MaLR 144 234 -361 7 1377 405 272 81 64 chr12 103887205 103887369 -17370161 + MLT1B LTR MaLR 5 171 -219 7 1377 487 272 237 31 chr12 103887369 103887593 -17369937 + B4 SINE B4 1 270 -22 7 1377 227 245 0 0 chr12 103887598 103887647 -17369883 + C-rich Low_complexity Low_complexity 5 53 0 7 1377 694 81 0 18 chr12 103888173 103888286 -17369244 + (TG)n Simple_repeat Simple_repeat 2 112 0 7 1377 554 165 19 10 chr12 103888507 103888611 -17368919 - PB1D9 SINE Alu -7 113 9 7 1377 303 238 8 118 chr12 103888516 103888635 -17368895 - MT2B LTR ERVL -345 256 151 7 1377 930 81 71 35 chr12 103888657 103888786 -17368744 + B1_Mus1 SINE Alu 3 140 -8 7 1377 360 0 0 0 chr12 103888786 103888826 -17368704 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1377 930 81 71 35 chr12 103888826 103888837 -17368693 + B1_Mus1 SINE Alu 141 148 0 7 1377 258 194 58 29 chr12 103889330 103889399 -17368131 + PB1D10 SINE Alu 18 88 -29 7 1377 249 267 75 62 chr12 103889445 103889520 -17368010 + ID4 SINE ID 2 78 -5 7 1377 567 81 0 0 chr12 103889520 103889606 -17367924 + (CAAG)n Simple_repeat Simple_repeat 2 87 0 7 1377 220 271 115 33 chr12 103891473 103891595 -17365935 + MIR3 SINE MIR 1 132 -76 7 1377 391 353 43 19 chr12 103892582 103892790 -17364740 + L1MC1 LINE L1 6015 6227 -106 7 1377 426 258 0 0 chr12 103893122 103893219 -17364311 + ID_B1 SINE B4 128 224 0 7 1377 378 0 0 0 chr12 103895958 103896000 -17361530 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1377 330 224 133 0 chr12 103901071 103901169 -17356361 - MIRc SINE MIR -52 216 106 7 1377 421 266 64 0 chr12 103901919 103902028 -17355502 - PB1D10 SINE Alu 0 117 2 7 1377 216 280 0 0 chr12 103902071 103902121 -17355409 + L4 LINE RTE 1772 1821 -208 7 1377 1087 186 59 0 chr12 103902337 103902541 -17354989 + B3 SINE B2 1 216 0 7 1377 547 326 155 18 chr12 103902570 103902848 -17354682 + MER2B DNA MER2_type 1 316 -20 7 1377 298 286 146 28 chr12 103904106 103904250 -17353280 + RSINE1 SINE B4 2 162 -3 7 1377 214 284 0 63 chr12 103906391 103906470 -17351060 + CT-rich Low_complexity Low_complexity 3 76 0 7 1377 326 159 14 0 chr12 103906894 103906963 -17350567 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 1377 216 0 0 0 chr12 103907049 103907073 -17350457 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1377 415 244 12 0 chr12 103907075 103907161 -17350369 - PB1D9 SINE Alu -12 108 22 7 1377 234 0 0 0 chr12 103907404 103907430 -17350100 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1377 3276 68 2 0 chr12 103907663 103908062 -17349468 + MTB LTR MaLR 1 400 0 7 1377 518 212 24 4 chr12 103909398 103909519 -17348011 + B3 SINE B2 77 200 -16 7 1377 351 94 0 0 chr12 103909518 103909571 -17347959 - PB1D9 SINE Alu -66 54 2 7 1377 22 0 0 0 chr12 103909878 103909900 -17347630 + GC_rich Low_complexity Low_complexity 1 22 0 7 1377 1340 310 89 19 chr12 103910751 103911388 -17346142 - Charlie2b DNA MER1_type -72 2710 2029 7 1377 186 254 73 0 chr12 103911601 103911656 -17345874 - MIRb SINE MIR -31 237 179 7 1377 255 339 62 31 chr12 103912076 103912204 -17345326 + MIRc SINE MIR 21 152 -116 7 1377 279 316 8 17 chr12 103913193 103913312 -17344218 + CT-rich Low_complexity Low_complexity 2 119 0 7 1377 313 208 46 22 chr12 103914126 103914237 -17343293 - B1_Mur3 SINE Alu -36 113 4 7 1377 851 157 0 75 chr12 103914290 103914449 -17343081 - B1_Mur4 SINE Alu -2 148 2 7 1377 705 292 60 20 chr12 103914622 103914870 -17342660 + L1MA4 LINE L1 5675 5932 -368 7 1377 195 42 0 0 chr12 103916668 103916692 -17340838 + (G)n Simple_repeat Simple_repeat 1 24 0 7 1377 290 235 0 0 chr12 103917989 103918040 -17339490 + PB1D10 SINE Alu 30 80 -37 7 1377 527 316 58 10 chr12 103920465 103920673 -17336857 - MLT1D LTR MaLR -287 218 1 7 1377 432 67 0 0 chr12 103922815 103922875 -17334655 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1377 918 166 409 11 chr12 103925588 103925862 -17331668 + ORR1C2 LTR MaLR 2 384 0 7 1377 374 277 199 19 chr12 103925917 103926123 -17331407 - Lx8 LINE L1 -5 7468 7226 7 1377 536 263 20 26 chr12 103926098 103926293 -17331237 + L1M2 LINE L1 3547 3740 -2403 7 1377 233 323 9 83 chr12 103926296 103926327 -17331203 + MT2B2 LTR ERVL 134 233 -351 7 1377 363 260 0 0 chr12 103926327 103926404 -17331126 + B1F1 SINE Alu 2 78 -71 7 1377 183 311 65 45 chr12 103926426 103926581 -17330949 + L2c LINE L2 3003 3160 -227 7 1377 586 182 18 0 chr12 103926849 103926959 -17330571 - PB1D9 SINE Alu 0 120 9 7 1377 278 244 169 66 chr12 103926959 103926978 -17330552 - B4 SINE B4 -63 195 80 7 1377 1402 88 16 0 chr12 103927172 103927354 -17330176 + B2_Mm2 SINE B2 3 187 -8 7 1377 1557 63 0 0 chr12 103927364 103927555 -17329975 + B2_Mm1a SINE B2 3 193 0 7 1377 1032 52 0 0 chr12 103927623 103927759 -17329771 - B1_Mus1 SINE Alu 0 148 13 7 1377 477 167 0 105 chr12 103927658 103927772 -17329758 - MT2B LTR ERVL -337 264 163 7 1377 241 254 0 53 chr12 103927663 103927796 -17329734 - ORR1B1-int LTR MaLR -755 754 629 7 1377 242 191 0 0 chr12 103927847 103927894 -17329636 + G-rich Low_complexity Low_complexity 1 47 0 7 1377 384 331 16 16 chr12 103928677 103928800 -17328730 + MLT1A LTR MaLR 8 130 -244 7 1377 1146 36 50 0 chr12 103928842 103928982 -17328548 - B1_Mus2 SINE Alu 0 147 1 8 1377 410 233 33 49 chr12 103928986 103929108 -17328422 - PB1D7 SINE Alu 0 120 1 8 1377 455 62 50 0 chr12 103929144 103929224 -17328306 + (TC)n Simple_repeat Simple_repeat 1 84 0 8 1377 226 314 88 0 chr12 103931068 103931170 -17326360 + MLT1A LTR MaLR 379 489 -106 7 1377 189 0 0 0 chr12 103931205 103931226 -17326304 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 8 1377 942 82 82 0 chr12 103932103 103932238 -17325292 + B1_Mur4 SINE Alu 5 150 0 8 1377 185 208 0 0 chr12 103932316 103932360 -17325170 - MIR SINE MIR -146 116 73 8 1377 185 0 0 39 chr12 103933324 103933350 -17324180 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 8 1377 193 347 27 0 chr12 103934271 103934346 -17323184 + MIRb SINE MIR 100 176 -92 8 1377 201 159 0 0 chr12 103937530 103937574 -17319956 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1377 506 221 11 0 chr12 103937840 103937935 -17319595 + B1_Mur3 SINE Alu 10 105 -44 8 1377 787 218 64 34 chr12 103937937 103938141 -17319389 - ID_B1 SINE B4 -13 211 2 8 1377 451 252 0 27 chr12 103938994 103939104 -17318426 + PB1D10 SINE Alu 2 108 -9 8 1377 537 212 16 25 chr12 103939667 103939788 -17317742 + PB1D7 SINE Alu 1 120 0 8 1378 250 372 7 14 chr12 103942310 103942449 -17315081 + MIRc SINE MIR 68 205 -63 8 1378 236 28 0 53 chr12 103943174 103943212 -17314318 + (CGGGG)n Simple_repeat Simple_repeat 3 38 0 8 1378 187 31 30 30 chr12 103943270 103943303 -17314227 + (CCCCG)n Simple_repeat Simple_repeat 4 36 0 8 1378 806 334 68 37 chr12 103944187 103944365 -17313165 + MER31B LTR ERV1 16 193 -273 8 1378 559 259 77 0 chr12 103944365 103944508 -17313022 + RSINE1 SINE B4 2 155 -10 8 1378 806 334 68 37 chr12 103944508 103944683 -17312847 + MER31B LTR ERV1 194 380 -86 8 1378 225 359 150 0 chr12 103945848 103946068 -17311462 - L2a LINE L2 -252 3174 2922 8 1378 798 325 150 19 chr12 103946117 103946712 -17310818 - L2a LINE L2 -608 2811 2139 8 1378 909 183 200 0 chr12 103946879 103947059 -17310471 + B3 SINE B2 1 216 0 8 1378 463 159 47 0 chr12 103947093 103947195 -17310335 + B1_Mur3 SINE Alu 2 149 0 8 1378 1569 57 0 20 chr12 103947269 103947466 -17310064 + B2_Mm1t SINE B2 1 193 0 8 1378 876 238 61 102 chr12 103947492 103947579 -17309951 + B4 SINE B4 10 87 -205 8 1378 1293 40 0 0 chr12 103947579 103947727 -17309803 + B1_Mus1 SINE Alu 1 148 0 8 1378 876 238 61 102 chr12 103947727 103947934 -17309596 + B4 SINE B4 88 292 0 8 1378 204 135 0 0 chr12 103947940 103947977 -17309553 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1378 782 280 82 7 chr12 103948127 103948397 -17309133 + B4A SINE B4 2 291 -1 8 1378 934 227 53 24 chr12 103948666 103948874 -17308656 - B3 SINE B2 0 216 3 8 1378 512 263 86 26 chr12 103948883 103949078 -17308452 - B3 SINE B2 -4 191 1 8 1378 339 313 55 146 chr12 103949173 103949536 -17307994 + MLT1A1 LTR MaLR 71 400 -8 8 1378 1374 69 26 26 chr12 103950162 103950356 -17307174 - B2_Mm2 SINE B2 0 195 2 8 1378 625 277 43 24 chr12 103950371 103950578 -17306952 - B3 SINE B2 -3 213 3 8 1378 1370 86 27 11 chr12 103950711 103950899 -17306631 + B2_Mm2 SINE B2 1 191 -4 8 1378 420 111 0 0 chr12 103950904 103950967 -17306563 + (GA)n Simple_repeat Simple_repeat 1 63 0 8 1378 264 325 84 0 chr12 103951006 103951089 -17306441 + RSINE1 SINE B4 55 144 -21 8 1378 275 308 0 0 chr12 103951124 103951189 -17306341 + ID4_ SINE ID 2 66 -17 8 1378 1038 141 0 0 chr12 103951281 103951430 -17306100 + B1_Mur4 SINE Alu 2 150 0 8 1378 630 131 152 15 chr12 103952622 103952754 -17304776 + B1_Mur4 SINE Alu 1 150 0 8 1378 486 125 0 0 chr12 103952754 103952834 -17304696 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 8 1378 266 234 0 144 chr12 103952897 103952987 -17304543 + MTEb LTR MaLR 160 236 -143 8 1378 430 263 92 21 chr12 103952972 103953121 -17304409 + MTE2a LTR MaLR 149 328 -51 8 1378 305 248 57 47 chr12 103953124 103953230 -17304300 + MER58B DNA MER1_type 10 116 -225 8 1378 607 264 13 39 chr12 103953533 103953687 -17303843 + RSINE1 SINE B4 2 151 -14 8 1378 209 72 0 67 chr12 103953915 103953960 -17303570 + (C)n Simple_repeat Simple_repeat 1 42 0 8 1378 414 0 0 0 chr12 103954001 103954047 -17303483 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 8 1378 1453 63 16 0 chr12 103954048 103954237 -17303293 + B2_Mm1a SINE B2 1 192 -1 8 1378 222 237 16 48 chr12 103954825 103954887 -17302643 - ID4_ SINE ID -9 74 15 8 1378 374 259 88 34 chr12 103955576 103955724 -17301806 + MER53 DNA hAT 37 192 -1 8 1378 1130 80 0 0 chr12 103956194 103956332 -17301198 + B1_Mus1 SINE Alu 1 138 -10 8 1378 248 0 0 30 chr12 103956332 103956365 -17301165 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1378 1262 41 0 0 chr12 103956684 103956831 -17300699 - B1_Mus2 SINE Alu 0 147 1 8 1378 206 311 27 13 chr12 103957228 103957303 -17300227 + MIRb SINE MIR 122 197 -71 8 1378 814 299 5 5 chr12 103957424 103957646 -17299884 - ID_B1 SINE B4 -2 222 1 8 1378 227 363 105 9 chr12 103957966 103958080 -17299450 + MER20B DNA MER1_type 4 128 -655 8 1378 437 277 53 102 chr12 103958457 103958682 -17298848 + B4A SINE B4 8 221 -71 8 1378 1091 50 0 48 chr12 103958541 103958688 -17298842 + B1_Mus1 SINE Alu 9 148 0 8 1378 1208 62 0 0 chr12 103958977 103959122 -17298408 - B1_Mus2 SINE Alu -2 145 1 8 1378 789 232 136 25 chr12 103959321 103959564 -17297966 + B4A SINE B4 8 277 -15 8 1378 312 26 0 0 chr12 103959645 103959660 -17297870 + (A)n Simple_repeat Simple_repeat 1 15 0 8 1378 1239 54 0 0 chr12 103959660 103959807 -17297723 + B1_Mus2 SINE Alu 1 147 0 8 1378 312 26 0 0 chr12 103959807 103959830 -17297700 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1378 689 130 0 9 chr12 103959947 103960063 -17297467 + BC1_Mm scRNA scRNA 1 115 -37 8 1378 189 155 34 17 chr12 103960189 103960248 -17297282 + GA-rich Low_complexity Low_complexity 2 61 0 8 1378 274 264 240 15 chr12 103960978 103961174 -17296356 + L1MC4 LINE L1 6568 6807 -1235 8 1378 726 150 68 45 chr12 103961623 103961756 -17295774 - B1_Mur1 SINE Alu -1 148 13 8 1378 1167 49 21 0 chr12 103961756 103961900 -17295630 + B1_Mus2 SINE Alu 1 147 0 8 1378 368 20 20 0 chr12 103961903 103961952 -17295578 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 8 1378 683 328 66 77 chr12 103961973 103962323 -17295207 - MLT1J LTR MaLR -160 352 7 8 1378 593 184 8 58 chr12 103962517 103962638 -17294892 - PB1D9 SINE Alu -1 119 5 8 1378 928 138 240 6 chr12 103962651 103962826 -17294704 - B3 SINE B2 0 216 1 8 1378 549 242 164 6 chr12 103962838 103963021 -17294509 - B3 SINE B2 -4 212 1 8 1378 24 0 0 0 chr12 103963023 103963047 -17294483 + AT_rich Low_complexity Low_complexity 1 24 0 8 1378 410 290 61 8 chr12 103963078 103963210 -17294320 - RSINE1 SINE B4 -15 150 12 8 1378 499 264 39 39 chr12 103964835 103964965 -17292565 + RSINE1 SINE B4 1 130 -35 8 1378 415 286 35 9 chr12 103964987 103965100 -17292430 - PB1D10 SINE Alu 0 117 2 8 1378 259 275 113 96 chr12 103965100 103965235 -17292295 + MT2B LTR ERVL 127 264 -337 8 1378 722 209 45 0 chr12 103965133 103965267 -17292263 + B1_Mur1 SINE Alu 9 148 -1 8 1378 1168 208 50 161 chr12 103965536 103965914 -17291616 - MTE2a LTR MaLR -39 340 5 8 1378 987 108 0 14 chr12 103966000 103966141 -17291389 + B1_Mur4 SINE Alu 6 144 -6 8 1378 666 177 105 0 chr12 103966664 103966788 -17290742 + MTEb LTR MaLR 1 137 -242 8 1378 408 235 92 0 chr12 103966968 103967066 -17290464 + PB1D7 SINE Alu 9 115 -5 8 1378 266 0 0 29 chr12 103967070 103967105 -17290425 + (TAA)n Simple_repeat Simple_repeat 2 35 0 8 1378 1103 224 9 5 chr12 103967107 103967322 -17290208 + B3 SINE B2 1 216 0 8 1378 1350 85 17 6 chr12 103967343 103967521 -17290009 + B2_Mm2 SINE B2 1 180 -15 8 1378 207 0 0 0 chr12 103967522 103967545 -17289985 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1378 218 151 19 19 chr12 103967677 103967731 -17289799 + (GGGTG)n Simple_repeat Simple_repeat 3 56 0 8 1378 223 235 20 0 chr12 103967817 103967868 -17289662 - B4A SINE B4 -199 93 42 8 1378 293 308 57 41 chr12 103968058 103968180 -17289350 - LTR16E2 LTR ERVL -196 372 249 8 1378 311 243 121 11 chr12 103968341 103968445 -17289085 - PB1D10 SINE Alu -29 120 3 8 1378 281 281 124 62 chr12 103968445 103968494 -17289036 - ID_B1 SINE B4 -132 92 36 8 1378 380 271 70 58 chr12 103968748 103969014 -17288516 + MLT1K LTR MaLR 58 386 -209 8 1378 291 284 119 17 chr12 103969186 103969304 -17288226 - L2c LINE L2 -42 3345 3216 8 1378 540 111 0 0 chr12 103970094 103970175 -17287355 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1378 390 295 0 118 chr12 103970198 103970325 -17287205 + RSINE1 SINE B4 54 165 0 8 1378 1433 53 25 41 chr12 103970360 103970557 -17286973 + B2_Mm2 SINE B2 2 195 0 8 1378 837 182 39 28 chr12 103970570 103970751 -17286779 + B2_Mm2 SINE B2 3 185 -10 8 1378 578 242 16 24 chr12 103970751 103970878 -17286652 + MER2 DNA MER2_type 87 212 -133 8 1378 583 128 0 0 chr12 103971147 103971239 -17286291 - B1_Mur4 SINE Alu -54 95 4 8 1378 214 280 60 0 chr12 103971239 103971282 -17286248 - B3 SINE B2 -170 46 1 8 1378 203 32 65 0 chr12 103971833 103971864 -17285666 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 8 1378 450 0 0 0 chr12 103971869 103971919 -17285611 + (TCCC)n Simple_repeat Simple_repeat 2 51 0 8 1378 369 0 0 0 chr12 103971948 103971989 -17285541 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 9 1378 195 220 0 0 chr12 103972381 103972431 -17285099 + A-rich Low_complexity Low_complexity 1 50 0 9 1378 459 195 0 0 chr12 103973055 103973137 -17284393 + ID4_ SINE ID 1 82 -1 9 1378 403 165 46 30 chr12 103973740 103973825 -17283705 - B1_Mur1 SINE Alu 0 149 43 9 1378 266 272 56 37 chr12 103973825 103973846 -17283684 - ID_B1 SINE B4 -2 221 114 9 1378 230 239 73 15 chr12 103973984 103974052 -17283478 - L1MC3 LINE L1 -30 7965 7894 9 1378 1655 142 208 12 chr12 103974052 103974388 -17283142 + RLTR23 LTR ERV1 1 402 -28 9 1378 1244 209 35 16 chr12 103974473 103974730 -17282800 + MTD LTR MaLR 3 264 -155 9 1378 1106 39 0 0 chr12 103974764 103974894 -17282636 - B2_Mm2 SINE B2 -63 132 3 9 1378 317 292 19 0 chr12 103975017 103975123 -17282407 - L1MC3 LINE L1 -538 7457 7350 9 1378 724 257 158 42 chr12 103975156 103975416 -17282114 + ORR1E LTR MaLR 5 294 -65 9 1378 216 180 0 0 chr12 103975430 103975455 -17282075 + A-rich Low_complexity Low_complexity 1 25 0 9 1378 1119 54 0 52 chr12 103975455 103975610 -17281920 + B1_Mus2 SINE Alu 1 147 0 9 1378 216 180 0 0 chr12 103975610 103975645 -17281885 + A-rich Low_complexity Low_complexity 26 60 0 9 1378 932 168 0 39 chr12 103975655 103975797 -17281733 + B1_Mur4 SINE Alu 1 137 -13 9 1378 216 0 0 0 chr12 103975797 103975821 -17281709 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 9 1378 932 168 0 39 chr12 103975821 103975833 -17281697 + B1_Mur4 SINE Alu 138 149 -1 9 1378 434 261 152 3 chr12 103975907 103976136 -17281394 - L1MC3 LINE L1 -878 7117 6867 9 1378 1337 29 135 0 chr12 103976137 103976307 -17281223 - B2_Mm1t SINE B2 0 193 1 9 1378 426 271 74 15 chr12 103976522 103976657 -17280873 + B3 SINE B2 2 144 -72 9 1378 21 0 0 0 chr12 103976690 103976711 -17280819 + AT_rich Low_complexity Low_complexity 1 21 0 9 1378 1278 34 0 0 chr12 103976711 103976857 -17280673 - B1_Mus1 SINE Alu 0 148 3 9 1378 180 238 23 23 chr12 103976860 103976903 -17280627 + MIRc SINE MIR 105 147 -121 9 1378 686 251 35 45 chr12 103976994 103977194 -17280336 + B3A SINE B2 1 198 0 9 1378 1295 75 25 46 chr12 103977795 103977991 -17279539 - B2_Mm1a SINE B2 -1 192 1 9 1378 1298 78 50 0 chr12 103978054 103978233 -17279297 - B2_Mm2 SINE B2 -6 189 2 9 1378 265 299 145 10 chr12 103978797 103978919 -17278611 + MIRc SINE MIR 34 167 -41 9 1378 315 280 26 53 chr12 103979441 103979554 -17277976 - PB1D7 SINE Alu -1 119 10 9 1378 700 159 105 8 chr12 103979752 103979885 -17277645 + B1_Mus2 SINE Alu 1 146 -1 9 1378 2208 358 14 19 chr12 103980481 103981501 -17276029 - MamGyp-int LTR Gypsy -3945 1117 103 9 1378 189 0 0 0 chr12 103981534 103981555 -17275975 + (CCG)n Simple_repeat Simple_repeat 3 23 0 9 1378 686 147 69 15 chr12 103983770 103983901 -17273629 - B1_Mus1 SINE Alu -1 147 10 9 1378 368 256 84 98 chr12 103983774 103983917 -17273613 - B4 SINE B4 -70 222 82 9 1378 385 250 56 106 chr12 103984585 103984609 -17272921 + B4 SINE B4 69 221 -71 9 1378 700 173 15 29 chr12 103984609 103984746 -17272784 + B1_Mus1 SINE Alu 10 144 -4 9 1378 236 316 127 68 chr12 103984883 103985073 -17272457 - MIR SINE MIR -12 250 58 9 1378 580 208 115 0 chr12 103985077 103985207 -17272323 + B1_Mur2 SINE Alu 2 146 -3 9 1378 182 171 23 88 chr12 103985221 103985271 -17272259 - MIR SINE MIR -194 74 21 9 1378 680 161 92 8 chr12 103985329 103985448 -17272082 - B1_Mus2 SINE Alu 0 147 19 9 1378 516 252 3 20 chr12 103985548 103985660 -17271870 - B4 SINE B4 -11 281 66 9 1378 190 317 213 27 chr12 103986811 103987003 -17270527 + L2a LINE L2 2137 2370 -1049 9 1378 232 382 18 9 chr12 103987003 103987114 -17270416 - PB1D10 SINE Alu -5 112 1 9 1378 190 317 213 27 chr12 103987114 103987222 -17270308 + L2a LINE L2 2371 2492 -927 9 1378 289 270 115 39 chr12 103987228 103987332 -17270198 + ID_B1 SINE B4 102 213 -11 9 1378 430 143 88 32 chr12 103987314 103987432 -17270098 + B1_Mus2 SINE Alu 16 135 -12 9 1378 362 158 39 18 chr12 103987514 103987597 -17269933 - B1F2 SINE Alu -36 84 7 9 1378 226 273 101 25 chr12 103987801 103987880 -17269650 + L2a LINE L2 3329 3413 -13 9 1378 839 50 244 0 chr12 103988158 103988277 -17269253 - B1_Mus1 SINE Alu 0 148 1 9 1378 1403 74 16 10 chr12 103988517 103988709 -17268821 - B2_Mm1t SINE B2 0 193 1 9 1378 920 80 104 0 chr12 103989000 103989125 -17268405 - B1_Mm SINE Alu -8 139 2 9 1378 216 0 0 0 chr12 103989136 103989160 -17268370 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1378 349 314 27 87 chr12 103989272 103989311 -17268219 + ID_B1 SINE B4 50 223 -1 9 1378 612 212 34 62 chr12 103989311 103989457 -17268073 + B1_Mur1 SINE Alu 7 148 -1 9 1378 218 232 33 67 chr12 103989478 103989538 -17267992 - B4A SINE B4 -145 147 90 9 1378 776 174 172 12 chr12 103990033 103990196 -17267334 - B3 SINE B2 -27 189 1 9 1378 453 250 16 49 chr12 103990420 103990542 -17266988 + B1_Mur1 SINE Alu 32 149 0 9 1378 721 192 0 37 chr12 103990548 103990683 -17266847 + B1_Mur4 SINE Alu 3 132 -18 9 1378 336 256 25 25 chr12 103990775 103990855 -17266675 - ID4 SINE ID -3 80 1 9 1378 216 0 0 0 chr12 103990864 103990888 -17266642 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 1378 480 262 0 39 chr12 103991009 103991136 -17266394 + ID_B1 SINE B4 100 221 -3 9 1378 470 250 84 49 chr12 103991136 103991279 -17266251 + B1F SINE Alu 1 148 -1 9 1378 1497 63 16 0 chr12 103991672 103991861 -17265669 - B2_Mm1a SINE B2 0 193 2 9 1378 387 231 68 77 chr12 103992135 103992252 -17265278 - PB1D10 SINE Alu 0 117 2 9 1378 362 296 30 10 chr12 103992517 103992616 -17264914 + RSINE1 SINE B4 2 102 -63 9 1378 627 240 20 32 chr12 103992682 103992825 -17264705 + B1_Mur2 SINE Alu 2 148 -1 9 1378 382 212 0 0 chr12 103992831 103992897 -17264633 + B1_Mus1 SINE Alu 18 83 -65 9 1378 1970 162 76 18 chr12 103992895 103993291 -17264239 + RLTR11A2 LTR ERVK 19 437 -90 9 1378 931 42 8 0 chr12 103993290 103993409 -17264121 + B1_Mm SINE Alu 28 147 0 9 1378 295 187 0 74 chr12 103993440 103993521 -17264009 + RLTR11A2 LTR ERVK 430 504 -23 9 1378 795 155 82 18 chr12 103993559 103993730 -17263800 - RLTR15 LTR ERVK 0 359 178 9 1378 1944 194 56 27 chr12 103993754 103994130 -17263400 + MT2A LTR ERVL 147 533 0 9 1378 1429 79 21 0 chr12 103994144 103994333 -17263197 - B2_Mm1t SINE B2 0 193 1 9 1378 400 265 16 66 chr12 103994480 103994601 -17262929 + PB1D9 SINE Alu 1 115 -5 9 1378 780 187 139 12 chr12 103994624 103994797 -17262733 + B3 SINE B2 2 196 -20 9 1378 550 203 64 25 chr12 103994931 103995088 -17262442 + Lx8 LINE L1 7117 7279 -194 9 1378 23 0 0 0 chr12 103995723 103995746 -17261784 + GC_rich Low_complexity Low_complexity 1 23 0 9 1378 1407 210 73 31 chr12 103997238 103997660 -17259870 + RMER10A LTR ERVL 1 440 -2 9 1378 328 310 78 29 chr12 103997772 103997875 -17259655 - PB1D10 SINE Alu -9 108 1 9 1378 645 195 73 0 chr12 103997902 103998025 -17259505 - B1_Mur1 SINE Alu 0 149 18 9 1378 302 228 144 52 chr12 103997941 103998038 -17259492 - MT2B LTR ERVL -341 260 155 9 1378 628 191 18 0 chr12 103998093 103998203 -17259327 - PB1D9 SINE Alu 0 120 9 9 1378 341 239 187 49 chr12 103998099 103998222 -17259308 - B4 SINE B4 -72 220 81 9 1378 610 266 37 37 chr12 103998219 103998410 -17259120 - B3A SINE B2 0 198 8 9 1378 373 310 12 55 chr12 103998448 103998612 -17258918 - RSINE1 SINE B4 -6 159 3 9 1378 1102 135 5 49 chr12 103998976 103999179 -17258351 + B2_Mm2 SINE B2 2 195 0 9 1378 797 112 37 0 chr12 103999194 103999328 -17258202 + B1_Mus2 SINE Alu 9 147 0 9 1378 393 150 265 20 chr12 104000229 104000331 -17257199 + B3 SINE B2 2 128 -88 1 1378 216 89 53 18 chr12 104000406 104000463 -17257067 + A-rich Low_complexity Low_complexity 2 60 0 2 1378 418 338 128 0 chr12 104000893 104001041 -17256489 + B3A SINE B2 2 168 -30 3 1378 346 230 197 34 chr12 104001058 104001175 -17256355 + B1_Mur3 SINE Alu 7 142 -7 4 1378 1315 41 0 0 chr12 104001195 104001342 -17256188 - B1_Mm SINE Alu 0 147 1 5 1378 202 119 0 67 chr12 104001807 104001852 -17255678 + T-rich Low_complexity Low_complexity 6 47 0 6 1378 585 291 0 0 chr12 104002051 104002178 -17255352 + B1_Mur1 SINE Alu 23 149 0 7 1378 258 322 111 99 chr12 104002054 104002216 -17255314 + B4 SINE B4 111 274 -18 8 1378 469 236 317 0 chr12 104003135 104003296 -17254234 - B3 SINE B2 0 216 5 9 1378 420 20 0 0 chr12 104003654 104003703 -17253827 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 1378 351 235 49 0 chr12 104004080 104004161 -17253369 + PB1D10 SINE Alu 28 112 -5 1 1378 718 194 0 8 chr12 104004194 104004319 -17253211 + B1_Mur1 SINE Alu 18 141 -8 1 1378 378 275 45 27 chr12 104005026 104005138 -17252392 - MLT1A1 LTR MaLR -265 143 30 1 1378 1060 135 83 11 chr12 104005974 104006154 -17251376 - B2_Mm2 SINE B2 -2 193 1 1 1378 597 221 68 111 chr12 104006586 104006682 -17250848 + B4 SINE B4 2 224 -67 1 1378 685 206 51 7 chr12 104006682 104006819 -17250711 + B1_Mur1 SINE Alu 6 148 -1 1 1378 723 295 38 16 chr12 104006826 104007012 -17250518 + B4A SINE B4 97 286 -6 1 1378 456 51 0 0 chr12 104007047 104007106 -17250424 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1378 268 177 410 16 chr12 104007122 104007245 -17250285 + B3 SINE B2 31 201 -15 1 1378 1168 93 76 0 chr12 104007564 104007736 -17249794 - B2_Mm2 SINE B2 0 195 11 2 1378 24 32 0 0 chr12 104007877 104007908 -17249622 + AT_rich Low_complexity Low_complexity 1 31 0 2 1378 189 0 0 0 chr12 104007965 104007986 -17249544 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1378 489 171 12 12 chr12 104008351 104008434 -17249096 + PB1D9 SINE Alu 3 85 -35 2 1378 741 150 0 0 chr12 104008722 104008855 -17248675 + (CA)n Simple_repeat Simple_repeat 2 134 0 2 1378 835 156 0 21 chr12 104008978 104009122 -17248408 + B1_Mur4 SINE Alu 2 142 -8 2 1378 708 183 106 8 chr12 104009595 104009727 -17247803 + B1_Mus2 SINE Alu 3 147 0 2 1378 247 241 19 0 chr12 104009789 104009843 -17247687 - B1F SINE Alu -94 55 1 2 1378 977 179 102 0 chr12 104010152 104010348 -17247182 - B3 SINE B2 0 216 1 2 1378 1275 48 0 0 chr12 104010411 104010557 -17246973 + B1_Mus2 SINE Alu 2 147 0 2 1378 638 187 97 0 chr12 104010849 104010983 -17246547 - B1_Mus2 SINE Alu 0 147 1 3 1378 590 314 79 22 chr12 104011231 104011459 -17246071 + B4A SINE B4 9 249 -43 3 1378 213 39 0 0 chr12 104011459 104011485 -17246045 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1378 414 0 0 0 chr12 104011562 104011608 -17245922 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1378 692 171 0 35 chr12 104011784 104011899 -17245631 + PB1D9 SINE Alu 2 112 -8 3 1378 1134 199 48 10 chr12 104011915 104012123 -17245407 + B3 SINE B2 1 216 0 3 1378 537 258 108 0 chr12 104012140 104012260 -17245270 + RSINE1 SINE B4 4 136 -29 3 1378 264 59 0 0 chr12 104012467 104012501 -17245029 + (TCC)n Simple_repeat Simple_repeat 2 35 0 3 1378 23 0 0 0 chr12 104012803 104012826 -17244704 + AT_rich Low_complexity Low_complexity 1 23 0 3 1378 224 309 0 76 chr12 104012861 104012872 -17244658 + ID SINE ID 76 78 -146 3 1378 430 225 26 24 chr12 104012872 104012997 -17244533 + PB1D9 SINE Alu 1 126 -24 4 1378 186 324 97 18 chr12 104013171 104013284 -17244246 + MIRb SINE MIR 45 166 -102 4 1378 386 226 36 24 chr12 104013289 104013399 -17244131 - PB1D9 SINE Alu -11 116 1 4 1378 216 259 0 94 chr12 104013346 104013410 -17244120 - ID_B1 SINE B4 -91 133 76 4 1378 333 218 191 2 chr12 104013685 104013781 -17243749 - B1F1 SINE Alu 0 117 10 4 1378 327 257 124 35 chr12 104016082 104016227 -17241303 + B4A SINE B4 6 163 -129 4 1378 747 205 104 10 chr12 104016608 104016800 -17240730 + Lx8 LINE L1 6857 7066 -407 4 1378 440 202 111 0 chr12 104016926 104017025 -17240505 + RSINE1 SINE B4 45 154 -11 4 1378 288 315 62 115 chr12 104017045 104017149 -17240381 + ID_B1 SINE B4 1 93 -131 4 1378 498 214 128 0 chr12 104017149 104017266 -17240264 + B1_Mur1 SINE Alu 1 132 -17 4 1378 2311 148 110 29 chr12 104017789 104018242 -17239288 + RLTR20A2 LTR ERVK 54 543 -35 5 1378 556 261 28 21 chr12 104022424 104022569 -17234961 - ID_B1 SINE B4 0 224 79 5 1378 745 144 51 0 chr12 104024524 104024642 -17232888 - B1_Mur2 SINE Alu -19 130 7 5 1378 1259 186 19 10 chr12 104024816 104025022 -17232508 + B3 SINE B2 1 208 -8 5 1378 296 305 124 0 chr12 104025108 104025213 -17232317 - PB1D7 SINE Alu -2 118 1 5 1378 290 294 44 0 chr12 104025244 104025312 -17232218 - PB1D10 SINE Alu -46 71 1 5 1378 189 74 0 0 chr12 104026175 104026202 -17231328 + (CAG)n Simple_repeat Simple_repeat 3 29 0 5 1378 236 195 0 0 chr12 104026758 104026799 -17230731 - ID_B1 SINE B4 -28 196 156 5 1378 186 43 0 0 chr12 104027233 104027256 -17230274 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1378 1276 34 7 0 chr12 104027256 104027394 -17230136 - B1_Mus2 SINE Alu -7 140 2 5 1378 813 149 0 0 chr12 104027397 104027518 -17230012 - B1_Mus1 SINE Alu 0 148 28 6 1378 567 211 144 30 chr12 104027521 104027653 -17229877 - B1_Mur1 SINE Alu 0 149 3 6 1378 1186 185 190 20 chr12 104027690 104027905 -17229625 + Lx9 LINE L1 7239 7517 -127 6 1378 204 67 0 0 chr12 104027905 104027935 -17229595 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1378 1186 185 190 20 chr12 104027935 104028066 -17229464 + Lx9 LINE L1 7518 7643 -1 6 1378 26 50 0 0 chr12 104028242 104028282 -17229248 + AT_rich Low_complexity Low_complexity 1 40 0 6 1378 209 321 90 18 chr12 104028653 104028764 -17228766 - MIRc SINE MIR -116 152 34 6 1378 1900 190 170 3 chr12 104029980 104030339 -17227191 + MTC LTR MaLR 1 419 -2 6 1378 262 246 137 81 chr12 104030368 104030492 -17227038 + MER58B DNA MER1_type 169 299 -42 6 1378 232 348 50 21 chr12 104030578 104030719 -17226811 - MIRb SINE MIR -4 264 120 6 1378 1106 81 186 0 chr12 104030761 104030922 -17226608 - B2_Mm2 SINE B2 -3 192 2 6 1378 416 286 102 0 chr12 104031143 104031241 -17226289 + PB1D9 SINE Alu 2 109 -11 7 1378 272 242 253 0 chr12 104031686 104031777 -17225753 - PB1D10 SINE Alu 0 117 4 7 1378 327 96 0 0 chr12 104032210 104032262 -17225268 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1378 250 286 52 62 chr12 104032536 104032633 -17224897 + RSINE1 SINE B4 66 161 -4 7 1378 679 171 0 41 chr12 104032682 104032795 -17224735 + PB1D9 SINE Alu 4 112 -8 7 1378 318 50 0 0 chr12 104032795 104032835 -17224695 + (CCA)n Simple_repeat Simple_repeat 1 40 0 7 1378 409 250 26 35 chr12 104034354 104034470 -17223060 + PB1D10 SINE Alu 3 117 0 7 1378 472 223 10 41 chr12 104034716 104034814 -17222716 - PB1D9 SINE Alu -20 100 6 7 1378 428 211 54 63 chr12 104034814 104034925 -17222605 - PB1D9 SINE Alu -6 114 5 7 1378 418 335 49 43 chr12 104034959 104034981 -17222549 - B4A SINE B4 -57 235 218 7 1378 219 36 0 0 chr12 104034981 104035009 -17222521 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1378 594 221 94 0 chr12 104035009 104035136 -17222394 - B1_Mur1 SINE Alu -10 139 1 8 1378 418 335 49 43 chr12 104035136 104035148 -17222382 - B4A SINE B4 -75 217 73 7 1378 1202 68 0 39 chr12 104035171 104035325 -17222205 - B1_Mus1 SINE Alu 0 148 1 8 1378 30 67 0 13 chr12 104035373 104035390 -17222140 + AT_rich Low_complexity Low_complexity 1 17 0 8 1378 1231 49 14 0 chr12 104035390 104035534 -17221996 + B1_Mm SINE Alu 2 147 0 8 1378 30 67 0 13 chr12 104035534 104035592 -17221938 + AT_rich Low_complexity Low_complexity 1 58 0 8 1378 3082 153 58 62 chr12 104036187 104036771 -17220759 - RMER4B LTR ERVK -2 583 2 8 1378 3170 127 54 21 chr12 104036945 104037428 -17220102 + RLTR19 LTR ERVK 1 499 0 8 1378 405 0 0 0 chr12 104037466 104037511 -17220019 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1378 629 325 56 56 chr12 104037512 104037606 -17219924 - Lx8 LINE L1 -33 7440 7344 8 1378 1249 75 0 0 chr12 104037606 104037753 -17219777 - B1_Mus1 SINE Alu 0 148 2 9 1378 629 325 56 56 chr12 104037753 104037942 -17219588 - Lx8 LINE L1 -130 7343 7157 8 1378 255 273 31 93 chr12 104038092 104038189 -17219341 + MT2B LTR ERVL 188 278 -323 9 1378 565 222 0 27 chr12 104038105 104038216 -17219314 + B1_Mur4 SINE Alu 43 150 0 9 1378 1564 58 5 21 chr12 104038219 104038413 -17219117 + B2_Mm1t SINE B2 2 192 -1 9 1378 605 194 14 21 chr12 104038451 104038593 -17218937 + L1MA6 LINE L1 3306 3446 -2694 9 1378 1033 171 15 70 chr12 104038596 104038797 -17218733 + B3 SINE B2 5 194 -22 9 1378 591 102 9 109 chr12 104038805 104038915 -17218615 + MT2A LTR ERVL 31 129 -404 9 1378 514 185 22 0 chr12 104038912 104039004 -17218526 + MT2A LTR ERVL 92 185 -348 9 1378 271 152 0 0 chr12 104039008 104039054 -17218476 + MT2A LTR ERVL 488 533 0 9 1378 559 263 229 0 chr12 104039111 104039286 -17218244 + B3 SINE B2 2 216 0 9 1378 621 125 279 0 chr12 104039401 104039505 -17218025 - B1_Mus1 SINE Alu -13 135 3 9 1378 1911 237 113 48 chr12 104039544 104039715 -17217815 + L1MA6 LINE L1 3585 3759 -2384 9 1378 633 256 38 13 chr12 104039715 104039873 -17217657 + RSINE1 SINE B4 2 163 -2 9 1378 1911 237 113 48 chr12 104039873 104040485 -17217045 + L1MA6 LINE L1 3760 4418 -1725 9 1378 719 213 97 0 chr12 104040485 104040554 -17216976 + ID SINE ID 1 84 -140 1 1378 444 255 54 18 chr12 104040554 104040666 -17216864 + PB1D10 SINE Alu 1 116 -1 1 1378 255 264 104 0 chr12 104040671 104040777 -17216753 + L1MA6 LINE L1 4452 4568 -1572 9 1378 1593 192 109 94 chr12 104040783 104041186 -17216344 + MTD LTR MaLR 1 409 -10 1 1378 833 225 65 34 chr12 104041196 104041506 -17216024 + L1MA6 LINE L1 4577 4893 -1247 9 1378 861 169 233 0 chr12 104041574 104041746 -17215784 + B3 SINE B2 5 216 0 1 1378 463 284 155 16 chr12 104041853 104042046 -17215484 + LTR31 LTR ERV1 249 468 -151 1 1378 928 209 174 36 chr12 104042178 104042422 -17215108 + L1MA6 LINE L1 4901 5200 -943 9 1378 1699 16 0 36 chr12 104042422 104042618 -17214912 + B2_Mm1a SINE B2 2 190 -3 1 1378 928 209 174 36 chr12 104042618 104042706 -17214824 + L1MA6 LINE L1 5201 5279 -864 9 1378 1259 222 111 163 chr12 104042707 104042897 -17214633 + MTC LTR MaLR 1 202 -219 1 1378 1293 34 7 7 chr12 104042897 104043045 -17214485 + B1_Mus1 SINE Alu 1 148 0 1 1378 1259 222 111 163 chr12 104043045 104043296 -17214234 + MTC LTR MaLR 203 419 -2 1 1378 369 138 106 0 chr12 104043304 104043384 -17214146 + B1_Mur4 SINE Alu 14 150 0 1 1378 305 222 87 20 chr12 104043387 104043515 -17214015 + L1MA6 LINE L1 5296 5421 -747 9 1378 1158 69 14 20 chr12 104043523 104043670 -17213860 + B1_Mus2 SINE Alu 1 146 -1 1 1378 1640 122 170 3 chr12 104043690 104043978 -17213552 + ORR1B1 LTR MaLR 41 376 -18 1 1378 289 290 0 93 chr12 104044041 104044159 -17213371 + B1_Mur1 SINE Alu 26 132 -17 1 1378 1770 135 77 3 chr12 104044152 104044449 -17213081 + ORR1C1 LTR MaLR 21 339 -39 1 1378 342 161 0 0 chr12 104044533 104044589 -17212941 + ORR1C1 LTR MaLR 312 367 0 1 1378 259 262 130 20 chr12 104044680 104044832 -17212698 + L1MA6 LINE L1 5482 5648 -594 9 1378 447 259 218 42 chr12 104044858 104045216 -17212314 + L1MA6 LINE L1 5863 6283 -17 9 1378 27 29 0 0 chr12 104045247 104045281 -17212249 + AT_rich Low_complexity Low_complexity 1 34 0 1 1378 343 278 144 61 chr12 104045325 104045505 -17212025 + B3A SINE B2 1 195 -3 1 1378 465 174 54 11 chr12 104045562 104045655 -17211875 - PB1D9 SINE Alu -1 119 23 1 1378 23 0 0 0 chr12 104046027 104046050 -17211480 + AT_rich Low_complexity Low_complexity 1 23 0 1 1378 1364 97 11 0 chr12 104046356 104046532 -17210998 - B2_Mm1t SINE B2 -14 179 2 1 1378 1313 98 12 0 chr12 104046540 104046713 -17210817 - B2_Mm1t SINE B2 -18 175 1 1 1378 613 263 31 25 chr12 104046758 104046918 -17210612 - RSINE1 SINE B4 -2 163 3 1 1378 633 291 0 0 chr12 104047234 104047361 -17210169 - ID_B1 SINE B4 -12 212 86 1 1378 398 309 0 0 chr12 104047588 104047614 -17209916 + ID SINE ID 56 81 -143 1 1378 307 339 44 9 chr12 104047614 104047727 -17209803 + PB1D10 SINE Alu 1 117 0 1 1378 401 272 132 31 chr12 104047876 104048005 -17209525 + RSINE1 SINE B4 12 153 -12 1 1378 305 275 0 101 chr12 104048171 104048260 -17209270 - ID4 SINE ID -3 80 1 1 1378 485 246 18 18 chr12 104048276 104048388 -17209142 - PB1D9 SINE Alu -7 113 2 1 1378 643 167 28 0 chr12 104048554 104048662 -17208868 - PB1D9 SINE Alu -8 112 2 1 1378 25 0 0 0 chr12 104048685 104048710 -17208820 + AT_rich Low_complexity Low_complexity 1 25 0 1 1378 2094 65 12 0 chr12 104048748 104048995 -17208535 - L1_Mus1 LINE L1 0 6567 6318 1 1378 291 114 0 0 chr12 104049164 104049208 -17208322 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1378 22 0 0 0 chr12 104049640 104049662 -17207868 + AT_rich Low_complexity Low_complexity 1 22 0 1 1378 26 0 0 0 chr12 104050117 104050143 -17207387 + AT_rich Low_complexity Low_complexity 1 26 0 1 1378 1478 62 23 0 chr12 104051637 104051813 -17205717 + B2_Mm2 SINE B2 2 181 -14 1 1378 429 69 276 43 chr12 104051826 104051944 -17205586 + B2_Mm2 SINE B2 47 194 -1 1 1378 621 244 0 0 chr12 104051950 104052065 -17205465 + B1_Mur2 SINE Alu 2 116 -33 1 1378 180 0 0 0 chr12 104052263 104052283 -17205247 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1378 242 254 14 40 chr12 104052465 104052539 -17204991 + L3 LINE CR1 3312 3383 -1106 1 1378 240 100 0 0 chr12 104053212 104053252 -17204278 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1378 766 271 71 55 chr12 104053253 104053507 -17204023 - B4A SINE B4 -26 266 9 1 1378 371 257 45 45 chr12 104053531 104053641 -17203889 - PB1D10 SINE Alu -1 116 7 1 1378 408 290 0 41 chr12 104053551 104053648 -17203882 - ID_B1 SINE B4 -51 173 81 1 1378 186 297 175 26 chr12 104053852 104053966 -17203564 + L4 LINE RTE 611 741 -1288 1 1378 379 282 43 118 chr12 104054511 104054542 -17202988 + B4 SINE B4 70 218 -74 1 1378 657 203 15 15 chr12 104054542 104054672 -17202858 + B1_Mur2 SINE Alu 12 141 -8 1 1378 1824 10 0 5 chr12 104054683 104054877 -17202653 + B2_Mm1a SINE B2 1 193 0 1 1378 634 261 48 21 chr12 104055352 104055497 -17202033 - B1F SINE Alu 0 149 1 1 1378 787 266 0 0 chr12 104055647 104055790 -17201740 + RSINE1 SINE B4 1 143 -22 1 1378 201 39 0 0 chr12 104055872 104055898 -17201632 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 1378 759 143 15 31 chr12 104055921 104056051 -17201479 + B2_Mm2 SINE B2 15 142 -53 1 1378 225 0 0 0 chr12 104056061 104056086 -17201444 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1378 234 0 0 0 chr12 104056557 104056583 -17200947 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1378 1916 160 81 13 chr12 104057369 104057750 -17199780 + MTB_Mm LTR MaLR 1 407 0 1 1378 524 321 70 102 chr12 104058203 104058577 -17198953 + LTR33C LTR ERVL 16 377 -251 1 1378 491 313 79 40 chr12 104058971 104059224 -17198306 + LTR16E1 LTR ERVL 275 537 -1 1 1378 255 209 43 43 chr12 104059332 104059402 -17198128 + PB1 SINE Alu 53 122 -5 1 1378 473 227 51 56 chr12 104059403 104059599 -17197931 + RMER3D-int LTR ERVK 1113 1307 -1535 1 1378 1175 166 171 17 chr12 104059664 104060088 -17197442 + MYSERV16_I-int LTR ERVK 277 765 -1561 1 1378 1683 26 0 0 chr12 104060089 104060282 -17197248 - B2_Mm1a SINE B2 0 193 1 1 1378 5989 147 52 23 chr12 104060287 104061622 -17195908 + MYSERV16_I-int LTR ERVK 1084 2842 0 1 1378 2539 154 53 24 chr12 104061622 104062113 -17195417 + RLTR16 LTR ERVK 1 505 0 1 1378 230 292 15 0 chr12 104062908 104062973 -17194557 + ID4_ SINE ID 1 66 -17 1 1378 195 273 152 0 chr12 104063489 104063555 -17193975 + L2c LINE L2 3307 3382 -5 1 1378 942 131 0 0 chr12 104063821 104063989 -17193541 + (GAAA)n Simple_repeat Simple_repeat 3 170 0 1 1378 907 147 0 0 chr12 104064081 104064224 -17193306 + B1_Mur4 SINE Alu 1 143 -7 1 1378 261 57 0 0 chr12 104064228 104064263 -17193267 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1378 1350 56 33 16 chr12 104064293 104064475 -17193055 - B2_Mm2 SINE B2 -8 187 3 1 1378 812 172 225 0 chr12 104064482 104064651 -17192879 - B3 SINE B2 -7 209 3 1 1378 481 238 78 13 chr12 104064726 104064879 -17192651 - RSINE1 SINE B4 0 165 3 1 1378 1209 117 11 5 chr12 104065029 104065044 -17192486 - B2_Mm2 SINE B2 -3 192 178 1 1378 182 37 37 0 chr12 104065044 104065071 -17192459 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1378 547 40 0 0 chr12 104065073 104065147 -17192383 - L1Md_T LINE L1 0 6582 6509 1 1378 1209 117 11 5 chr12 104065147 104065317 -17192213 - B2_Mm2 SINE B2 -18 177 6 1 1378 928 277 73 0 chr12 104065631 104065891 -17191639 - B4 SINE B4 -12 280 2 1 1378 573 273 8 0 chr12 104066981 104067109 -17190421 - B1_Mur1 SINE Alu -9 140 12 1 1378 333 338 27 47 chr12 104067109 104067121 -17190409 - ID_B1 SINE B4 0 170 79 1 1378 227 249 14 0 chr12 104067204 104067267 -17190263 - MIRb SINE MIR -173 95 23 1 1378 544 254 49 0 chr12 104068149 104068271 -17189259 + B1_Mur1 SINE Alu 13 140 -9 1 1378 853 235 98 0 chr12 104068645 104068828 -17188702 + B3 SINE B2 1 201 -15 1 1378 671 232 117 17 chr12 104068893 104069073 -17188457 + B3A SINE B2 1 198 0 1 1378 1118 75 0 7 chr12 104069075 104069223 -17188307 + B1_Mus1 SINE Alu 1 147 -1 1 1378 22 0 0 0 chr12 104069230 104069252 -17188278 + AT_rich Low_complexity Low_complexity 1 22 0 1 1379 23 43 0 21 chr12 104071812 104071831 -17185699 + AT_rich Low_complexity Low_complexity 1 19 0 1 1379 343 298 151 72 chr12 104071831 104071983 -17185547 + RSINE1 SINE B4 2 165 0 1 1379 23 43 0 21 chr12 104071983 104072011 -17185519 + AT_rich Low_complexity Low_complexity 1 28 0 1 1379 307 328 69 12 chr12 104072159 104072332 -17185198 - HAL1 LINE L1 -336 2171 1989 1 1379 183 80 0 0 chr12 104072462 104072487 -17185043 + (CCCTAA)n Simple_repeat Simple_repeat 1 25 0 1 1379 251 234 87 24 chr12 104072501 104072628 -17184902 - HAL1 LINE L1 -714 1793 1659 1 1379 222 37 0 0 chr12 104072741 104072768 -17184762 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1 1379 461 214 214 0 chr12 104072774 104072891 -17184639 - B1_Mus1 SINE Alu -5 143 2 1 1379 299 264 92 0 chr12 104073022 104073109 -17184421 - PB1D9 SINE Alu 0 120 26 1 1379 410 270 50 81 chr12 104073176 104073233 -17184297 - MER105 DNA DNA -1 203 155 1 1379 966 222 72 0 chr12 104073233 104073427 -17184103 + B3 SINE B2 3 210 -6 1 1379 410 270 50 81 chr12 104073427 104073530 -17184000 - MER105 DNA DNA -50 154 48 1 1379 456 312 101 14 chr12 104073852 104074070 -17183460 - MIR SINE MIR -5 257 21 1 1379 195 150 0 48 chr12 104075125 104075167 -17182363 + MIR3 SINE MIR 168 207 -1 1 1379 369 0 0 0 chr12 104075238 104075279 -17182251 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 1 1379 22 0 0 0 chr12 104075425 104075447 -17182083 + AT_rich Low_complexity Low_complexity 1 22 0 1 1379 217 286 15 60 chr12 104077064 104077075 -17180455 + B4 SINE B4 80 87 -205 1 1379 307 284 25 0 chr12 104077075 104077156 -17180374 + PB1D10 SINE Alu 2 84 -33 1 1379 341 327 35 0 chr12 104077270 104077380 -17180150 + B4A SINE B4 117 230 -62 1 1379 770 289 10 26 chr12 104077380 104077575 -17179955 + B3A SINE B2 1 192 -6 1 1379 311 372 91 43 chr12 104077575 104077633 -17179897 + B4A SINE B4 1 265 -27 1 1379 626 269 28 28 chr12 104077718 104077863 -17179667 + RSINE1 SINE B4 12 156 -9 1 1379 214 270 16 0 chr12 104077908 104077971 -17179559 + GA-rich Low_complexity Low_complexity 4 67 0 1 1379 1173 61 0 0 chr12 104078723 104078870 -17178660 + B1_Mus1 SINE Alu 2 148 0 1 1379 445 221 19 9 chr12 104079259 104079364 -17178166 - PB1D10 SINE Alu -9 108 3 1 1379 3602 120 154 15 chr12 104080050 104080712 -17176818 + RMER6A LTR ERVK 3 756 0 2 1379 25 31 0 0 chr12 104080904 104080936 -17176594 + AT_rich Low_complexity Low_complexity 1 32 0 2 1379 717 238 40 45 chr12 104081010 104081208 -17176322 - B3A SINE B2 -1 197 1 2 1379 7822 34 8 2 chr12 104081435 104082510 -17175020 - L1Md_F2 LINE L1 -14 6568 5494 2 1379 700 182 23 31 chr12 104082812 104082942 -17174588 - B1_Mur4 SINE Alu -13 137 9 2 1379 326 252 0 155 chr12 104082826 104082981 -17174549 - MT2B LTR ERVL -325 276 146 2 1379 267 268 23 23 chr12 104083173 104083261 -17174269 + MER103 DNA DNA 20 107 -59 2 1379 252 315 27 27 chr12 104083457 104083532 -17173998 + MIR3 SINE MIR 95 169 -39 2 1379 33172 50 7 5 chr12 104083659 104088584 -17168946 + L1Md_F3 LINE L1 659 5586 -297 2 1379 8217 38 8 0 chr12 104088584 104089571 -17167959 + L1Md_F3 LINE L1 5587 6581 -3 2 1379 203 246 68 14 chr12 104089671 104089745 -17167785 + MIRb SINE MIR 122 199 -69 2 1379 12179 135 43 19 chr12 104090048 104091173 -17166357 + Lx5 LINE L1 3492 4630 -1247 2 1379 216 0 0 0 chr12 104091173 104091197 -17166333 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1379 12179 144 44 18 chr12 104091197 104093049 -17164481 + Lx5 LINE L1 4631 6541 -509 2 1379 2125 133 15 12 chr12 104093049 104093377 -17164153 + ORR1A4 LTR MaLR 1 329 0 2 1379 7365 159 46 16 chr12 104093377 104093859 -17163671 + Lx5 LINE L1 6542 7049 -1 2 1379 21 36 0 0 chr12 104093868 104093896 -17163634 + AT_rich Low_complexity Low_complexity 1 28 0 2 1379 479 35 0 0 chr12 104093982 104094040 -17163490 - ORR1A4 LTR MaLR 0 329 272 2 1379 304 211 13 13 chr12 104094040 104094117 -17163413 + L1M3 LINE L1 5615 5691 -480 2 1379 400 350 16 16 chr12 104094163 104094285 -17163245 - PB1 SINE Alu -5 122 1 2 1379 26 0 0 0 chr12 104094315 104094341 -17163189 + AT_rich Low_complexity Low_complexity 1 26 0 2 1379 22 0 0 0 chr12 104094716 104094738 -17162792 + AT_rich Low_complexity Low_complexity 1 22 0 2 1379 905 182 0 0 chr12 104094738 104094886 -17162644 - B1_Mur1 SINE Alu -1 148 1 2 1379 813 314 69 76 chr12 104095058 104095132 -17162398 - B4A SINE B4 -4 288 233 2 1379 662 247 150 36 chr12 104095132 104095325 -17162205 - B3 SINE B2 0 216 2 2 1379 813 314 69 76 chr12 104095325 104095540 -17161990 - B4A SINE B4 -60 232 1 2 1379 392 264 28 0 chr12 104095575 104095681 -17161849 + PB1D10 SINE Alu 1 109 -8 2 1379 37 44 0 14 chr12 104095739 104095788 -17161742 + AT_rich Low_complexity Low_complexity 1 49 0 2 1379 1154 49 28 0 chr12 104095788 104095931 -17161599 + B1_Mus2 SINE Alu 1 147 0 2 1379 37 44 0 14 chr12 104095931 104095950 -17161580 + AT_rich Low_complexity Low_complexity 1 19 0 2 1379 257 284 124 21 chr12 104096361 104096458 -17161072 - PB1D9 SINE Alu -12 108 2 2 1379 444 214 120 64 chr12 104096731 104096856 -17160674 + B1_Mur1 SINE Alu 4 135 -14 2 1379 713 115 16 0 chr12 104096857 104096979 -17160551 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 2 1379 23 0 0 0 chr12 104097198 104097221 -17160309 + AT_rich Low_complexity Low_complexity 1 23 0 2 1379 855 231 66 5 chr12 104097397 104097593 -17159937 + B3 SINE B2 1 208 -8 2 1379 242 75 50 0 chr12 104097604 104097644 -17159886 + (TATG)n Simple_repeat Simple_repeat 3 44 0 2 1379 343 239 0 78 chr12 104097719 104097796 -17159734 - ID_B1 SINE B4 -70 154 84 2 1379 576 244 111 74 chr12 104098109 104098299 -17159231 + B3A SINE B2 2 198 0 2 1379 215 310 67 58 chr12 104098500 104098620 -17158910 - L2c LINE L2 -72 3315 3195 2 1379 1025 325 44 21 chr12 104098873 104099256 -17158274 + MER68 LTR ERVL 7 398 -165 2 1379 314 276 140 20 chr12 104099448 104099548 -17157982 + PB1D7 SINE Alu 1 112 -8 2 1379 196 264 57 98 chr12 104099823 104099945 -17157585 + L2c LINE L2 3269 3385 -2 2 1379 486 0 0 0 chr12 104101130 104101184 -17156346 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1379 917 244 79 65 chr12 104101345 104101774 -17155756 + L1MB1 LINE L1 5711 6145 -23 2 1379 685 231 63 29 chr12 104101810 104101984 -17155546 + B3A SINE B2 3 182 -16 2 1379 262 132 148 19 chr12 104102106 104102160 -17155370 + ID4 SINE ID 15 75 -8 2 1379 681 216 148 21 chr12 104102239 104102428 -17155102 + ID_B1 SINE B4 2 214 -10 2 1379 243 339 0 31 chr12 104102552 104102616 -17154914 + ID4 SINE ID 20 81 -2 2 1379 309 291 56 56 chr12 104102631 104102770 -17154760 - L2c LINE L2 -5 3382 3244 2 1379 342 320 36 10 chr12 104102770 104102885 -17154645 + MIR SINE MIR 4 123 -145 2 1379 303 93 0 0 chr12 104103184 104103227 -17154303 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1379 921 221 19 37 chr12 104103267 104103483 -17154047 - B3 SINE B2 -3 213 2 2 1379 451 197 0 0 chr12 104103513 104103584 -17153946 + ID4_ SINE ID 2 72 -11 2 1379 695 244 31 0 chr12 104103682 104103809 -17153721 + RSINE1 SINE B4 2 132 -33 2 1379 571 286 132 14 chr12 104103837 104104337 -17153193 + Lx7 LINE L1 5615 6158 -1315 2 1379 635 120 80 0 chr12 104104337 104104437 -17153093 + PB1D9 SINE Alu 1 108 -12 2 1379 282 29 0 0 chr12 104104439 104104474 -17153056 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1379 441 316 161 18 chr12 104104474 104104639 -17152891 + Lx7 LINE L1 6159 6373 -1100 2 1379 315 0 0 0 chr12 104104761 104104796 -17152734 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1379 7277 47 21 2 chr12 104105739 104107022 -17150508 - L1Md_F2 LINE L1 -13 6569 5261 2 1379 702 337 64 0 chr12 104107107 104107294 -17150236 + B4 SINE B4 84 282 -10 2 1379 790 216 70 5 chr12 104107503 104107689 -17149841 - B3A SINE B2 0 198 1 2 1379 404 283 32 21 chr12 104107725 104107819 -17149711 + PB1D7 SINE Alu 18 112 -8 2 1379 624 224 0 88 chr12 104107829 104107966 -17149564 + B1_Mus2 SINE Alu 12 136 -11 2 1379 729 204 169 0 chr12 104108364 104108536 -17148994 + B3 SINE B2 3 203 -13 2 1379 232 351 70 35 chr12 104108568 104108683 -17148847 - MLT1J LTR MaLR -91 421 303 2 1379 388 244 36 93 chr12 104109204 104109368 -17148162 + B3A SINE B2 2 197 -1 2 1379 767 207 7 20 chr12 104109553 104109701 -17147829 - B1_Mur1 SINE Alu -2 147 2 2 1379 635 230 31 50 chr12 104109717 104109877 -17147653 - RSINE1 SINE B4 -6 159 3 2 1379 462 309 8 0 chr12 104109953 104110079 -17147451 + PB1 SINE Alu 1 127 0 2 1379 391 270 50 14 chr12 104110194 104110333 -17147197 + B1F SINE Alu 1 144 -5 2 1379 240 86 0 0 chr12 104110562 104110597 -17146933 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1379 270 0 0 0 chr12 104110624 104110654 -17146876 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 2 1379 326 249 151 18 chr12 104110825 104111050 -17146480 + L1MB3 LINE L1 4539 4793 -1347 2 1379 482 216 35 47 chr12 104111276 104111406 -17146124 + L1MB3 LINE L1 5000 5132 -1014 2 1379 1427 69 32 0 chr12 104111406 104111595 -17145935 + B2_Mm2 SINE B2 1 195 0 2 1379 482 216 35 47 chr12 104111595 104111634 -17145896 + L1MB3 LINE L1 5133 5167 -979 2 1379 396 278 37 9 chr12 104111699 104111808 -17145722 + PB1D10 SINE Alu 2 113 -4 2 1379 288 223 31 125 chr12 104111899 104112027 -17145503 + RSINE1 SINE B4 46 161 -4 2 1379 344 243 0 51 chr12 104112036 104112153 -17145377 + L1MB3 LINE L1 5221 5331 -809 2 1379 336 217 91 35 chr12 104112252 104112437 -17145093 + L1MB3 LINE L1 5350 5555 -607 2 1379 829 219 155 31 chr12 104112466 104112815 -17144715 + L1MB3 LINE L1 5667 6058 -125 2 1379 313 230 22 33 chr12 104112949 104113039 -17144491 + RSINE1 SINE B4 37 125 -40 2 1379 667 182 78 121 chr12 104113113 104113319 -17144211 + B3A SINE B2 2 198 0 2 1379 1145 54 0 33 chr12 104113328 104113480 -17144050 + B1_Mus1 SINE Alu 2 148 0 2 1379 225 0 0 0 chr12 104113490 104113515 -17144015 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1379 649 172 325 0 chr12 104113518 104113681 -17143849 + B3 SINE B2 1 216 0 2 1379 35 110 0 0 chr12 104116102 104116256 -17141274 + GC_rich Low_complexity Low_complexity 1 154 0 2 1379 22 0 0 0 chr12 104116364 104116386 -17141144 + GC_rich Low_complexity Low_complexity 1 22 0 2 1379 195 167 0 0 chr12 104116460 104116502 -17141028 + (CCG)n Simple_repeat Simple_repeat 1 42 0 2 1379 371 338 0 7 chr12 104117301 104117444 -17140086 - MIRc SINE MIR 0 268 127 2 1379 767 184 183 6 chr12 104117552 104117727 -17139803 - B3 SINE B2 -10 206 1 2 1379 287 270 171 17 chr12 104117882 104117999 -17139531 - ID_B1 SINE B4 -4 220 86 2 1379 527 147 38 30 chr12 104118371 104118504 -17139026 + T-rich Low_complexity Low_complexity 2 135 0 2 1379 261 0 0 0 chr12 104118526 104118555 -17138975 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1379 221 316 207 41 chr12 104118631 104118776 -17138754 - B4 SINE B4 -123 169 1 2 1379 863 53 0 0 chr12 104119415 104119529 -17138001 + B1_Mus2 SINE Alu 1 114 -33 2 1379 990 228 20 10 chr12 104119976 104120180 -17137350 + B3 SINE B2 1 206 -10 2 1379 472 275 71 20 chr12 104120314 104120511 -17137019 - ORR1E LTR MaLR -125 234 28 2 1379 1177 75 0 0 chr12 104120914 104121061 -17136469 + B1_Mus1 SINE Alu 2 148 0 2 1379 324 0 0 0 chr12 104121273 104121309 -17136221 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1379 516 295 32 0 chr12 104121314 104121470 -17136060 - RSINE1 SINE B4 -2 163 3 2 1379 1087 179 24 34 chr12 104121720 104121928 -17135602 + B3 SINE B2 1 206 -10 2 1379 512 223 33 0 chr12 104122096 104122217 -17135313 - ID_B1 SINE B4 -3 221 97 2 1379 393 288 13 86 chr12 104122267 104122419 -17135111 + ID_B1 SINE B4 77 217 -7 2 1379 201 74 0 0 chr12 104122423 104122450 -17135080 + (CAAG)n Simple_repeat Simple_repeat 1 27 0 2 1379 409 212 147 26 chr12 104122452 104122568 -17134962 + B1F1 SINE Alu 20 149 0 2 1379 228 269 44 15 chr12 104122626 104122694 -17134836 + ID4_ SINE ID 4 73 -10 2 1379 698 269 0 7 chr12 104122859 104123005 -17134525 + RSINE1 SINE B4 3 147 -18 2 1379 243 0 0 0 chr12 104123010 104123037 -17134493 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1379 243 122 102 0 chr12 104123074 104123123 -17134407 + PB1D7 SINE Alu 66 119 -1 3 1379 265 232 14 0 chr12 104123195 104123264 -17134266 + L1M5 LINE L1 5534 5603 -637 3 1379 218 282 47 12 chr12 104125287 104125373 -17132157 + B1F SINE Alu 52 140 -9 3 1379 231 146 0 0 chr12 104125474 104125515 -17132015 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1379 22 0 0 0 chr12 104125515 104125537 -17131993 + AT_rich Low_complexity Low_complexity 1 22 0 3 1379 288 70 0 0 chr12 104126335 104126378 -17131152 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1379 258 352 8 24 chr12 104126553 104126678 -17130852 - PB1 SINE Alu -3 124 2 3 1379 594 219 31 0 chr12 104126739 104126867 -17130663 + B3A SINE B2 1 132 -66 3 1379 454 305 122 5 chr12 104127781 104128002 -17129528 + Lx8 LINE L1 7199 7445 -28 3 1379 316 314 188 31 chr12 104128049 104128177 -17129353 + RSINE1 SINE B4 2 149 -16 3 1379 325 241 80 11 chr12 104128231 104128319 -17129211 + PB1D10 SINE Alu 13 106 -11 3 1379 243 144 62 18 chr12 104128339 104128452 -17129078 + (TA)n Simple_repeat Simple_repeat 1 118 0 3 1379 934 157 6 0 chr12 104128487 104128646 -17128884 + ORR1D1 LTR MaLR 2 161 -213 3 1379 1729 241 70 72 chr12 104128646 104128992 -17128538 - RMER19C LTR ERVK 0 611 241 3 1379 3374 78 28 7 chr12 104128992 104129455 -17128075 - MT2C_Mm LTR ERVL -2 473 1 3 1379 1729 241 70 72 chr12 104129455 104129720 -17127810 - RMER19C LTR ERVK -371 240 1 3 1379 966 157 60 5 chr12 104129730 104129929 -17127601 + ORR1D1 LTR MaLR 162 371 -3 3 1379 336 24 0 0 chr12 104129929 104129970 -17127560 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1379 258 156 0 0 chr12 104129990 104130035 -17127495 + (CAA)n Simple_repeat Simple_repeat 1 45 0 3 1379 946 146 134 0 chr12 104130507 104130678 -17126852 + B3 SINE B2 2 195 -21 3 1379 1817 157 128 33 chr12 104130956 104131172 -17126358 - ORR1B2 LTR MaLR 0 367 113 3 1379 561 15 0 0 chr12 104131172 104131238 -17126292 + (CCCTAA)n Simple_repeat Simple_repeat 1 66 0 3 1379 1817 157 128 33 chr12 104131238 104131356 -17126174 - ORR1B2 LTR MaLR -255 112 1 3 1379 805 249 28 14 chr12 104131526 104131738 -17125792 - B3 SINE B2 0 216 2 3 1379 432 0 0 0 chr12 104132365 104132413 -17125117 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1379 369 340 74 87 chr12 104133360 104133818 -17123712 + HAL1 LINE L1 816 1267 -1240 3 1379 1952 162 71 0 chr12 104133988 104134327 -17123203 + ORR1B2 LTR MaLR 1 363 -4 3 1379 513 255 20 66 chr12 104134389 104134540 -17122990 + B3A SINE B2 2 145 -53 3 1379 387 0 0 0 chr12 104134546 104134589 -17122941 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1379 2031 124 25 86 chr12 104134751 104135148 -17122382 - ORR1B1 LTR MaLR 0 394 22 3 1379 558 41 0 0 chr12 104135299 104135372 -17122158 + (TATG)n Simple_repeat Simple_repeat 2 74 0 3 1379 231 36 0 0 chr12 104135453 104135481 -17122049 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1379 547 14 28 0 chr12 104135888 104135960 -17121570 + (TTTA)n Simple_repeat Simple_repeat 1 74 0 3 1379 1117 87 0 0 chr12 104135960 104136121 -17121409 - B2_Mm2 SINE B2 -34 161 1 3 1379 758 127 8 0 chr12 104136420 104136546 -17120984 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 3 1379 600 118 193 0 chr12 104136552 104136671 -17120859 - B1_Mur3 SINE Alu -2 147 6 3 1379 307 226 73 73 chr12 104136767 104136891 -17120639 - ID_B1 SINE B4 -21 203 80 3 1379 215 93 23 0 chr12 104137747 104137790 -17119740 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1379 544 301 80 0 chr12 104138124 104138287 -17119243 - B3A SINE B2 -22 176 1 3 1379 235 254 56 0 chr12 104138779 104138850 -17118680 - ID4 SINE ID -5 78 4 3 1379 1426 146 168 7 chr12 104139039 104139336 -17118194 + ORR1B2 LTR MaLR 3 347 -20 3 1379 330 26 0 0 chr12 104139404 104139443 -17118087 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1379 305 269 13 0 chr12 104139615 104139693 -17117837 - MTEb LTR MaLR -1 378 300 3 1379 513 289 56 7 chr12 104140010 104140153 -17117377 - RSINE1 SINE B4 -12 153 4 3 1379 211 333 8 75 chr12 104140211 104140331 -17117199 + MIRb SINE MIR 118 229 -39 3 1379 219 231 0 0 chr12 104140502 104140541 -17116989 + B4A SINE B4 87 125 -167 3 1379 1236 100 140 164 chr12 104140542 104140654 -17116876 + MTB_Mm LTR MaLR 80 187 -220 3 1379 1189 75 0 0 chr12 104140654 104140800 -17116730 + B1_Mus1 SINE Alu 3 148 0 3 1379 1236 100 140 164 chr12 104140800 104141023 -17116507 + MTB_Mm LTR MaLR 188 407 0 3 1379 5767 135 107 22 chr12 104141022 104142175 -17115355 + MTB_Mm-int LTR MaLR 2 1252 -6 3 1379 377 157 29 0 chr12 104142150 104142220 -17115310 + MTB_Mm LTR MaLR 10 81 -326 3 1379 1471 58 16 16 chr12 104142401 104142592 -17114938 + B2_Mm2 SINE B2 2 192 -3 3 1379 260 324 98 49 chr12 104142606 104142749 -17114781 - MLT2D LTR ERVL -84 330 181 3 1379 1149 48 7 20 chr12 104142863 104143012 -17114518 + B1_Mus2 SINE Alu 1 147 0 3 1379 411 266 137 19 chr12 104143038 104143199 -17114331 - MLT2D LTR ERVL -234 180 1 3 1379 375 221 43 26 chr12 104143402 104143518 -17114012 - RLTR15 LTR ERVK -239 120 3 3 1379 305 301 0 24 chr12 104143626 104143711 -17113819 - PB1D10 SINE Alu -33 84 2 3 1379 718 191 59 0 chr12 104143832 104143968 -17113562 - B1_Mur2 SINE Alu -5 144 1 3 1379 23 33 0 0 chr12 104144180 104144210 -17113320 + AT_rich Low_complexity Low_complexity 1 30 0 3 1379 288 53 0 0 chr12 104144257 104144295 -17113235 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1379 317 225 8 24 chr12 104144786 104144909 -17112621 + CT-rich Low_complexity Low_complexity 2 122 0 3 1379 590 222 166 19 chr12 104145205 104145416 -17112114 + L1MCa LINE L1 1274 1515 -4993 3 1379 988 208 30 15 chr12 104145421 104145621 -17111909 + B3 SINE B2 1 203 -13 3 1379 996 279 49 76 chr12 104145737 104146106 -17111424 + MTEa LTR MaLR 1 359 -20 3 1379 243 0 0 0 chr12 104147682 104147709 -17109821 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1379 774 267 18 14 chr12 104147816 104148036 -17109494 + MLT2B1 LTR ERVL 3 223 -297 3 1379 2985 117 49 2 chr12 104148092 104148579 -17108951 + RLTR28 LTR ERVL 1 510 -14 3 1379 275 258 53 11 chr12 104148654 104148748 -17108782 + B4A SINE B4 173 270 -22 3 1379 266 261 79 11 chr12 104148829 104148918 -17108612 - L1M5 LINE L1 -457 5722 5628 3 1379 995 122 13 20 chr12 104148961 104149111 -17108419 + B1_Mur3 SINE Alu 1 149 0 3 1379 327 288 117 7 chr12 104149130 104149284 -17108246 + MER58A DNA MER1_type 48 218 -6 3 1379 2705 134 66 99 chr12 104149340 104149918 -17107612 - RMER19B LTR ERVK -343 559 1 3 1379 213 39 0 0 chr12 104150150 104150176 -17107354 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1379 793 188 21 7 chr12 104150176 104150321 -17107209 - B1_Mus1 SINE Alu -1 147 1 3 1379 252 122 0 0 chr12 104150327 104150368 -17107162 + (ATG)n Simple_repeat Simple_repeat 1 41 0 3 1379 325 245 184 0 chr12 104150486 104150584 -17106946 + PB1D10 SINE Alu 1 116 -1 3 1379 554 305 19 51 chr12 104150618 104150832 -17106698 + B4A SINE B4 86 292 0 3 1379 213 132 0 0 chr12 104151020 104151058 -17106472 + (TCC)n Simple_repeat Simple_repeat 3 40 0 3 1379 851 320 108 67 chr12 104151250 104151689 -17105841 + MLT1H1 LTR MaLR 1 452 -103 3 1379 1089 88 0 0 chr12 104151689 104151837 -17105693 - B1_Mus1 SINE Alu 0 148 1 3 1379 851 320 108 67 chr12 104151837 104151889 -17105641 + MLT1H1 LTR MaLR 453 512 -43 3 1379 789 159 0 46 chr12 104152034 104152186 -17105344 - B1_Mur4 SINE Alu -3 147 3 3 1379 464 45 0 29 chr12 104153513 104153581 -17103949 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 3 1379 261 0 0 0 chr12 104155399 104155428 -17102102 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1379 743 214 43 0 chr12 104155494 104155634 -17101896 + B1_Mur1 SINE Alu 1 146 -3 3 1379 2752 111 72 2 chr12 104155799 104156215 -17101315 - Lx LINE L1 -1 6653 6209 3 1379 1451 128 16 12 chr12 104156215 104156469 -17101061 + L1_Mur2 LINE L1 5152 5406 -471 3 1379 432 0 0 0 chr12 104156896 104156944 -17100586 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1379 360 0 0 0 chr12 104156944 104156983 -17100547 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1379 863 281 158 101 chr12 104156988 104157324 -17100206 + MTD LTR MaLR 11 365 -14 3 1379 316 312 108 28 chr12 104157385 104157599 -17099931 - Lx9 LINE L1 -186 7458 7228 3 1379 382 256 1 0 chr12 104157845 104157931 -17099599 + Lx8 LINE L1 5587 5673 -1971 3 1379 276 265 83 128 chr12 104158004 104158183 -17099347 - L1M2 LINE L1 -727 5570 5398 3 1379 824 226 27 11 chr12 104158183 104158371 -17099159 - B3A SINE B2 -7 191 1 3 1379 276 265 83 128 chr12 104158371 104158433 -17099097 - L1M2 LINE L1 -900 5397 5340 3 1379 294 50 0 0 chr12 104158579 104158619 -17098911 + (CATA)n Simple_repeat Simple_repeat 3 42 0 3 1379 1247 296 53 57 chr12 104158661 104158744 -17098786 - L1M2 LINE L1 -772 5371 5295 3 1379 560 213 86 29 chr12 104158744 104158884 -17098646 - B1_Mur1 SINE Alu -1 148 1 3 1379 1247 296 53 57 chr12 104158884 104159051 -17098479 - L1M2 LINE L1 -849 5294 5134 3 1379 234 0 0 0 chr12 104159051 104159077 -17098453 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 3 1379 1247 296 53 57 chr12 104159077 104159638 -17097892 - L1M2 LINE L1 -1010 5133 4562 3 1379 251 182 17 52 chr12 104159638 104159696 -17097834 + MTD LTR MaLR 251 306 -73 3 1379 634 221 15 8 chr12 104159769 104159901 -17097629 + ID_B1 SINE B4 80 212 -12 3 1379 1376 198 24 27 chr12 104159912 104160208 -17097322 - ORR1D1 LTR MaLR -79 295 1 3 1379 23 0 0 0 chr12 104160215 104160238 -17097292 + AT_rich Low_complexity Low_complexity 1 23 0 3 1379 518 309 112 8 chr12 104160778 104161166 -17096364 + L1ME3B LINE L1 5229 5654 -519 3 1379 1465 245 53 28 chr12 104161166 104161193 -17096337 - ORR1D2 LTR MaLR 0 370 344 3 1379 2028 154 66 14 chr12 104161193 104161542 -17095988 + ORR1B2 LTR MaLR 1 367 0 3 1379 1465 245 53 28 chr12 104161542 104161875 -17095655 - ORR1D2 LTR MaLR -27 343 1 3 1379 3519 246 43 43 chr12 104161875 104162917 -17094613 - ORR1D2-int LTR MaLR 0 1370 329 3 1379 1379 228 98 12 chr12 104162917 104163255 -17094275 - ORR1D2 LTR MaLR 0 370 4 3 1379 1255 28 7 0 chr12 104163271 104163416 -17094114 - B1_Mm SINE Alu -1 146 1 3 1379 780 273 84 33 chr12 104163419 104163718 -17093812 - ORR1D2-int LTR MaLR -1049 321 8 3 1379 1050 277 96 6 chr12 104163724 104164037 -17093493 - ORR1D2 LTR MaLR 0 370 30 3 1379 367 185 0 21 chr12 104164128 104164222 -17093308 + CT-rich Low_complexity Low_complexity 1 92 0 3 1379 258 284 59 64 chr12 104164706 104164909 -17092621 + L1ME3B LINE L1 5990 6191 -49 3 1379 855 264 26 9 chr12 104164914 104165147 -17092383 - MER44A DNA MER2_type 0 339 103 3 1379 237 196 0 0 chr12 104165168 104165219 -17092311 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 3 1379 765 241 60 40 chr12 104165220 104165419 -17092111 - B3 SINE B2 -13 203 1 3 1379 5804 198 121 17 chr12 104165712 104167091 -17090439 + Lx9 LINE L1 5843 7476 -168 4 1379 276 100 0 0 chr12 104167091 104167131 -17090399 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1379 5804 183 127 6 chr12 104167131 104167250 -17090280 + Lx9 LINE L1 7477 7640 -4 4 1379 270 81 0 0 chr12 104167694 104167731 -17089799 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 4 1379 2261 72 9 3 chr12 104168499 104168818 -17088712 - MTB_Mm LTR MaLR -86 321 1 4 1379 759 144 6 70 chr12 104170030 104170202 -17087328 + URR1B DNA MER1_type 65 225 0 4 1379 953 222 25 5 chr12 104170347 104170551 -17086979 + B3 SINE B2 9 216 0 4 1379 486 192 123 8 chr12 104170662 104170770 -17086760 + B1_Mur1 SINE Alu 24 141 -8 4 1379 306 0 0 0 chr12 104171148 104171182 -17086348 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1379 279 164 48 32 chr12 104171491 104171617 -17085913 + GA-rich Low_complexity Low_complexity 2 129 0 4 1379 314 123 18 0 chr12 104171969 104172026 -17085504 + (CAT)n Simple_repeat Simple_repeat 3 60 0 4 1379 771 127 56 63 chr12 104172037 104172180 -17085350 - B1_Mur2 SINE Alu -2 147 6 4 1379 308 223 98 152 chr12 104172180 104172201 -17085329 - B4 SINE B4 -69 223 69 4 1379 1121 64 43 0 chr12 104172233 104172374 -17085156 - B1_Mm SINE Alu 0 147 1 4 1379 290 321 41 77 chr12 104172606 104172775 -17084755 - RSINE1 SINE B4 -1 164 2 4 1379 405 0 0 0 chr12 104173738 104173783 -17083747 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1379 21 0 0 0 chr12 104173969 104173990 -17083540 + AT_rich Low_complexity Low_complexity 1 21 0 4 1379 716 201 20 34 chr12 104173990 104174139 -17083391 - B1_Mus2 SINE Alu 0 147 1 4 1379 443 100 0 14 chr12 104174140 104174211 -17083319 + (CCCCCT)n Simple_repeat Simple_repeat 5 74 0 4 1379 195 42 0 0 chr12 104174525 104174549 -17082981 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 1379 614 136 468 0 chr12 104174793 104174947 -17082583 + URR1A DNA MER1_type 1 226 0 4 1379 226 259 191 7 chr12 104175176 104175312 -17082218 + L1M5 LINE L1 3713 3873 -2273 4 1379 365 287 0 9 chr12 104175364 104175473 -17082057 + PB1 SINE Alu 12 120 -7 4 1379 207 0 0 0 chr12 104175944 104175967 -17081563 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1379 1040 249 113 24 chr12 104176095 104176475 -17081055 + L1MCb LINE L1 566 974 -5777 4 1379 403 245 63 101 chr12 104176849 104177117 -17080413 + L1MCb LINE L1 1050 1307 -5444 4 1379 243 272 0 0 chr12 104177257 104177360 -17080170 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1379 662 204 49 7 chr12 104177820 104177963 -17079567 + B1F SINE Alu 1 149 0 4 1379 273 365 0 0 chr12 104178286 104178390 -17079140 + PB1D10 SINE Alu 3 106 -11 4 1379 22 56 0 0 chr12 104178494 104178530 -17079000 + AT_rich Low_complexity Low_complexity 1 36 0 4 1379 290 26 26 0 chr12 104178610 104178649 -17078881 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 4 1379 3981 218 87 25 chr12 104178676 104179673 -17077857 - Lx7 LINE L1 -201 7495 6437 4 1379 234 271 18 27 chr12 104179761 104179871 -17077659 + L1MCb LINE L1 1679 1787 -4873 4 1379 214 233 123 0 chr12 104180009 104180082 -17077448 - PB1D10 SINE Alu -2 115 34 4 1379 322 275 63 17 chr12 104180170 104180344 -17077186 - L1MEb LINE L1 -5121 1079 898 4 1379 510 17 0 0 chr12 104180364 104180423 -17077107 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1379 444 252 0 9 chr12 104180454 104180562 -17076968 - RSINE1 SINE B4 -57 108 2 4 1379 321 280 169 6 chr12 104180562 104180745 -17076785 - L1MEb LINE L1 -5289 911 699 4 1379 378 295 43 14 chr12 104180756 104180897 -17076633 - B1F SINE Alu 0 149 5 4 1379 351 0 0 0 chr12 104180898 104180937 -17076593 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 1379 346 230 7 26 chr12 104180949 104181101 -17076429 + CT-rich Low_complexity Low_complexity 2 150 0 4 1379 278 135 192 0 chr12 104181220 104181272 -17076258 - PB1 SINE Alu -48 79 18 4 1379 256 217 72 0 chr12 104181288 104181371 -17076159 - L1MEb LINE L1 -5411 683 595 4 1379 574 182 155 32 chr12 104181365 104181552 -17075978 - Lx7 LINE L1 -29 7667 7458 4 1379 357 262 141 16 chr12 104181661 104181789 -17075741 - L1MEb LINE L1 -5618 476 333 4 1379 275 208 192 39 chr12 104181880 104182010 -17075520 - L1MEb LINE L1 -6013 187 38 4 1379 690 206 22 7 chr12 104182353 104182490 -17075040 + B1_Mus1 SINE Alu 4 142 -6 4 1379 242 125 0 20 chr12 104182490 104182539 -17074991 + (CAAAA)n Simple_repeat Simple_repeat 1 48 0 4 1379 273 301 102 62 chr12 104182548 104182725 -17074805 + B4 SINE B4 68 251 -41 4 1379 768 309 14 0 chr12 104182933 104183143 -17074387 + ID_B1 SINE B4 11 223 -1 4 1379 209 182 18 0 chr12 104183143 104183198 -17074332 + (CCTA)n Simple_repeat Simple_repeat 1 56 0 4 1379 239 234 0 0 chr12 104183205 104183252 -17074278 + ID4_ SINE ID 2 48 -35 4 1379 559 155 329 19 chr12 104183303 104183461 -17074069 - B3 SINE B2 -9 207 1 4 1379 621 262 53 43 chr12 104183513 104183700 -17073830 - B3A SINE B2 -8 190 2 4 1379 1113 219 122 4 chr12 104183855 104184134 -17073396 - ORR1D2 LTR MaLR -55 315 4 4 1379 250 319 0 0 chr12 104184145 104184214 -17073316 - ID4 SINE ID -12 71 3 4 1379 1306 47 88 0 chr12 104184252 104184423 -17073107 - B2_Mm2 SINE B2 -9 186 1 4 1379 309 89 0 0 chr12 104184552 104184597 -17072933 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1379 1433 88 0 25 chr12 104184770 104184969 -17072561 - B2_Mm2 SINE B2 -1 194 1 4 1379 192 40 0 0 chr12 104185590 104185615 -17071915 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 1379 243 146 0 0 chr12 104186606 104186647 -17070883 - MIRc SINE MIR -99 169 129 4 1379 252 226 47 12 chr12 104187878 104187963 -17069567 + G-rich Low_complexity Low_complexity 6 93 0 4 1379 435 307 101 19 chr12 104189030 104189239 -17068291 + MIRb SINE MIR 35 260 -8 4 1379 243 0 0 0 chr12 104189656 104189683 -17067847 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1379 227 262 37 12 chr12 104189826 104189907 -17067623 + MIR SINE MIR 81 163 -99 4 1379 396 0 0 0 chr12 104190881 104190925 -17066605 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1379 412 297 132 12 chr12 104190994 104191161 -17066369 + MIRb SINE MIR 52 238 -30 4 1379 585 0 0 0 chr12 104191686 104191751 -17065779 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1379 497 273 47 40 chr12 104191762 104191911 -17065619 - RSINE1 SINE B4 -11 154 5 4 1379 965 133 185 5 chr12 104193499 104193688 -17063842 - URR1B DNA MER1_type 0 225 3 4 1379 399 89 0 0 chr12 104194266 104194322 -17063208 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1379 381 43 0 0 chr12 104194323 104194370 -17063160 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1379 610 275 67 43 chr12 104194371 104194580 -17062950 + B4 SINE B4 79 292 0 4 1379 1659 198 64 3 chr12 104194891 104195251 -17062279 + MTD LTR MaLR 18 399 -20 4 1379 222 171 0 0 chr12 104195773 104195814 -17061716 + GA-rich Low_complexity Low_complexity 3 43 0 4 1379 252 0 0 0 chr12 104195827 104195855 -17061675 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1379 906 251 24 0 chr12 104196207 104196418 -17061112 - B3 SINE B2 0 216 1 4 1379 417 20 0 0 chr12 104196423 104196473 -17061057 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1379 25 31 0 0 chr12 104196946 104196978 -17060552 + AT_rich Low_complexity Low_complexity 1 32 0 4 1379 687 281 57 47 chr12 104197505 104197930 -17059600 - L1MC4 LINE L1 -3688 2527 2099 4 1379 479 277 22 14 chr12 104198200 104198339 -17059191 - L1MC4 LINE L1 -4493 1722 1583 4 1379 838 209 4 156 chr12 104198681 104198925 -17058605 - B3 SINE B2 -6 210 4 4 1379 984 99 0 0 chr12 104198931 104199073 -17058457 + (TTTC)n Simple_repeat Simple_repeat 2 143 0 4 1379 1579 185 101 168 chr12 104199267 104200019 -17057511 + RMER6D LTR ERVK 19 720 0 4 1379 447 325 53 19 chr12 104200019 104200226 -17057304 - B4A SINE B4 -74 218 5 4 1379 436 307 63 25 chr12 104200474 104200711 -17056819 - L1ME1 LINE L1 -26 6153 5908 4 1379 246 305 58 51 chr12 104200878 104201016 -17056514 - ORR1E LTR MaLR -162 197 59 4 1379 651 250 7 0 chr12 104201253 104201401 -17056129 - B1F SINE Alu 0 149 1 4 1379 263 28 28 0 chr12 104201419 104201455 -17056075 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1379 773 245 81 20 chr12 104201476 104201722 -17055808 - B4A SINE B4 -8 284 24 4 1379 1102 265 53 16 chr12 104201741 104202183 -17055347 - L1ME1 LINE L1 -518 5646 5185 4 172 778 220 39 192 chr12 104202239 104202577 -17054953 - B4 SINE B4 -5 287 2 4 1380 523 324 42 45 chr12 104202621 104202999 -17054531 - L1ME1 LINE L1 -1008 5138 4762 4 1380 414 0 0 0 chr12 104203078 104203124 -17054406 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1380 220 297 0 7 chr12 104203239 104203327 -17054203 + ID4_ SINE ID 1 88 -64 4 1380 480 255 27 7 chr12 104203327 104203473 -17054057 + B1F SINE Alu 1 149 0 4 1380 216 322 0 32 chr12 104203473 104203490 -17054040 + BC1_Mm scRNA scRNA 89 103 -49 4 1380 898 186 0 0 chr12 104203492 104203637 -17053893 + B1_Mus1 SINE Alu 3 147 -1 4 1380 865 316 40 7 chr12 104203719 104203993 -17053537 + B4A SINE B4 1 283 -9 4 1380 732 80 0 0 chr12 104204044 104204144 -17053386 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 1380 325 259 24 0 chr12 104204365 104204450 -17053080 - L1ME1 LINE L1 -1975 4171 4085 4 1380 428 247 20 0 chr12 104204499 104204622 -17052908 - L1ME1 LINE L1 -2313 3833 3702 4 1380 210 91 0 0 chr12 104204638 104204671 -17052859 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 4 1380 1020 310 95 28 chr12 104204687 104205194 -17052336 - MER21B LTR ERV1 -50 813 273 4 1380 580 200 0 12 chr12 104205422 104205584 -17051946 + (TA)n Simple_repeat Simple_repeat 2 161 0 4 1380 592 279 25 12 chr12 104205755 104205915 -17051615 + B4A SINE B4 3 164 -128 4 1380 784 320 8 41 chr12 104206259 104206366 -17051164 - B4A SINE B4 -19 273 176 4 1380 1465 121 9 13 chr12 104206366 104206592 -17050938 + URR1A DNA MER1_type 2 226 0 4 1380 784 320 8 41 chr12 104206592 104206751 -17050779 - B4A SINE B4 -117 175 16 4 1380 285 240 138 83 chr12 104207058 104207167 -17050363 - PB1D10 SINE Alu -2 115 1 4 1380 750 266 76 40 chr12 104207174 104207626 -17049904 - L1ME1 LINE L1 -3180 2966 2467 4 1380 486 324 41 0 chr12 104207842 104208012 -17049518 + ID_B1 SINE B4 2 178 -46 4 1380 329 169 26 0 chr12 104208289 104208366 -17049164 + CT-rich Low_complexity Low_complexity 4 82 0 4 1380 328 321 30 72 chr12 104208384 104208494 -17049036 - L1ME1 LINE L1 -4519 1723 1626 4 1380 272 25 0 48 chr12 104208494 104208536 -17048994 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 4 1380 490 333 89 87 chr12 104208536 104209236 -17048294 - L1ME1 LINE L1 -4651 1591 891 4 1380 213 233 50 0 chr12 104209288 104209348 -17048182 - RSINE1 SINE B4 -35 130 68 4 1380 395 290 108 26 chr12 104209399 104209668 -17047862 - L1ME1 LINE L1 -5235 901 611 4 1380 627 191 60 15 chr12 104209742 104209875 -17047655 - B1F SINE Alu 0 149 11 5 1380 1109 95 17 5 chr12 104210271 104210684 -17046846 + (TCTA)n Simple_repeat Simple_repeat 1 418 0 5 1380 402 287 52 32 chr12 104210776 104210931 -17046599 + RSINE1 SINE B4 3 160 -5 5 1380 377 130 22 0 chr12 104210932 104211024 -17046506 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 5 1380 25 41 0 20 chr12 104211595 104211625 -17045905 + AT_rich Low_complexity Low_complexity 1 30 0 5 1380 812 189 14 0 chr12 104211625 104211773 -17045757 - B1_Mur4 SINE Alu 0 150 1 5 1380 25 41 0 20 chr12 104211773 104211792 -17045738 + AT_rich Low_complexity Low_complexity 1 19 0 5 1380 288 350 60 8 chr12 104213480 104213728 -17043802 - HAL1 LINE L1 -892 1615 1355 5 1380 460 303 19 31 chr12 104213762 104213922 -17043608 - RSINE1 SINE B4 -5 160 3 5 1380 1213 171 55 0 chr12 104214270 104214469 -17043061 - B3 SINE B2 -6 210 1 5 1380 378 0 0 0 chr12 104214488 104214530 -17043000 + (CAAT)n Simple_repeat Simple_repeat 3 44 0 5 1380 522 353 38 4 chr12 104214578 104214814 -17042716 - B4A SINE B4 -6 286 43 5 1380 387 0 0 0 chr12 104214827 104214870 -17042660 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1380 236 324 86 60 chr12 104215201 104215598 -17041932 - HAL1 LINE L1 -1984 523 117 5 1380 258 187 11 21 chr12 104215607 104215615 -17041915 + (TA)n Simple_repeat Simple_repeat 2 9 0 5 1380 354 45 0 0 chr12 104215615 104215659 -17041871 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1380 258 187 11 21 chr12 104215659 104215743 -17041787 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 1380 309 261 8 102 chr12 104216147 104216275 -17041255 + MIR SINE MIR 118 233 -29 5 1380 560 282 56 32 chr12 104216418 104216667 -17040863 - Charlie13a DNA Charlie -302 1212 958 5 1380 803 250 59 21 chr12 104216704 104216941 -17040589 - MTE2b LTR MaLR -96 283 38 5 1380 237 65 0 0 chr12 104217093 104217124 -17040406 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1380 1252 78 78 6 chr12 104217169 104217349 -17040181 - B2_Mm2 SINE B2 0 195 3 5 1380 230 298 58 90 chr12 104217411 104217599 -17039931 - Charlie13a DNA Charlie -838 676 495 5 1380 185 0 0 39 chr12 104218191 104218217 -17039313 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 5 1380 309 26 0 0 chr12 104218640 104218678 -17038852 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 5 1380 202 188 0 0 chr12 104218921 104218953 -17038577 + G-rich Low_complexity Low_complexity 3 34 0 5 1380 292 308 50 17 chr12 104219026 104219145 -17038385 - MIRb SINE MIR -88 174 52 5 1380 470 284 66 65 chr12 104219162 104219482 -17038048 - MTEb LTR MaLR -9 370 28 5 1380 265 279 16 0 chr12 104219508 104219569 -17037961 + B1_Mur2 SINE Alu 75 136 -13 5 1380 396 59 0 0 chr12 104219573 104219624 -17037906 + (CAAG)n Simple_repeat Simple_repeat 1 51 0 5 1380 743 261 109 48 chr12 104219678 104220036 -17037494 - MTE-int LTR MaLR -95 1485 1106 5 1380 540 263 18 55 chr12 104221159 104221324 -17036206 - RSINE1 SINE B4 -4 161 3 5 1380 2574 60 13 9 chr12 104222666 104222984 -17034546 - L1Md_F2 LINE L1 -4 6578 6260 5 1380 336 76 0 5 chr12 104222984 104223035 -17034495 + L1Md_F2 LINE L1 6206 6256 -326 5 1380 414 0 0 0 chr12 104223040 104223086 -17034444 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1380 224 277 81 182 chr12 104223178 104223201 -17034329 - ID_B1 SINE B4 -1 223 203 5 1380 273 57 0 0 chr12 104223201 104223236 -17034294 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5 1380 224 277 81 182 chr12 104223236 104223285 -17034245 - ID_B1 SINE B4 -22 202 2 5 1380 851 187 17 46 chr12 104223285 104223459 -17034071 - B3 SINE B2 -46 170 2 5 1380 256 358 0 0 chr12 104223459 104223526 -17034004 - ID_B1 SINE B4 -67 157 91 5 1380 686 228 39 26 chr12 104223665 104223818 -17033712 - B3A SINE B2 -6 192 38 5 1380 286 123 17 17 chr12 104224007 104224065 -17033465 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 5 1380 198 234 0 111 chr12 104225876 104225948 -17031582 - MIRc SINE MIR -118 150 87 5 1380 1231 226 57 65 chr12 104225986 104226369 -17031161 - MLT1B LTR MaLR 0 390 11 5 1380 1229 214 5 0 chr12 104226736 104226951 -17030579 - B3 SINE B2 0 216 1 5 1380 435 173 0 0 chr12 104227174 104227255 -17030275 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 1380 393 39 0 0 chr12 104227274 104227325 -17030205 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1380 203 194 0 0 chr12 104229517 104229553 -17027977 + T-rich Low_complexity Low_complexity 1 36 0 5 1380 297 345 48 12 chr12 104231227 104231435 -17026095 - MIRm SINE MIR -43 219 5 5 1380 458 28 10 128 chr12 104231835 104232011 -17025519 + A-rich Low_complexity Low_complexity 2 157 0 5 1380 2477 53 0 0 chr12 104232011 104232321 -17025209 + L1_Mus1 LINE L1 6284 6567 0 5 1380 252 0 0 0 chr12 104233573 104233601 -17023929 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1380 326 71 0 51 chr12 104234462 104234500 -17023030 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1380 1224 75 0 0 chr12 104234500 104234646 -17022884 - B1_Mm SINE Alu 0 147 2 5 1380 326 71 0 51 chr12 104234646 104234666 -17022864 + (T)n Simple_repeat Simple_repeat 1 18 0 5 1380 414 0 0 0 chr12 104235879 104235925 -17021605 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1380 290 214 145 43 chr12 104239278 104239395 -17018135 - MIRb SINE MIR 0 268 140 5 1380 518 88 25 0 chr12 104240800 104240880 -17016650 + (TATG)n Simple_repeat Simple_repeat 3 84 0 5 1380 385 293 6 114 chr12 104240881 104241039 -17016491 - ID_B1 SINE B4 -6 218 78 5 1380 385 303 107 33 chr12 104241173 104241323 -17016207 + MIRb SINE MIR 22 182 -86 5 1380 180 0 0 0 chr12 104241418 104241438 -17016092 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1380 345 234 206 0 chr12 104241457 104241564 -17015966 - B1F1 SINE Alu -15 134 6 5 1380 219 341 0 24 chr12 104241500 104241584 -17015946 - B4 SINE B4 -140 152 71 5 1380 814 197 202 0 chr12 104241720 104241898 -17015632 - B3 SINE B2 -2 214 1 5 1380 180 212 0 0 chr12 104242498 104242531 -17014999 + MIR SINE MIR 93 125 -83 5 1380 279 0 0 0 chr12 104242823 104242854 -17014676 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1380 365 279 135 0 chr12 104243102 104243206 -17014324 + PB1D7 SINE Alu 2 119 -1 5 1380 900 115 22 30 chr12 104244056 104244190 -17013340 - B1_Mur4 SINE Alu -17 133 1 5 1380 344 382 95 14 chr12 104245108 104245521 -17012009 + L2a LINE L2 2708 3148 -278 5 1380 333 0 0 0 chr12 104245524 104245561 -17011969 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1380 230 333 92 103 chr12 104245605 104245866 -17011664 - B4 SINE B4 -21 271 14 5 1380 514 310 13 25 chr12 104246005 104246164 -17011366 + MER3 DNA MER1_type 1 157 -52 5 1380 234 0 0 0 chr12 104246578 104246604 -17010926 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1380 291 337 153 6 chr12 104246844 104247020 -17010510 - L3b LINE CR1 -8 474 273 5 1380 578 198 16 0 chr12 104247092 104247284 -17010246 + GA-rich Low_complexity Low_complexity 1 194 0 5 1380 183 80 0 0 chr12 104247285 104247310 -17010220 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 5 1380 371 309 78 54 chr12 104248153 104248358 -17009172 + Kanga2_a DNA Tc2 3 212 -676 5 1380 609 268 206 19 chr12 104248398 104248821 -17008709 + Kanga2_a DNA Tc2 301 802 -86 5 1380 705 278 61 19 chr12 104249061 104249274 -17008256 + ID_B1 SINE B4 1 222 -2 5 1380 527 269 0 0 chr12 104249762 104249870 -17007660 + PB1D7 SINE Alu 1 108 -12 5 1380 441 0 0 0 chr12 104249873 104249922 -17007608 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1380 204 173 37 37 chr12 104249925 104249979 -17007551 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 5 1380 29 28 0 0 chr12 104250487 104250523 -17007007 + AT_rich Low_complexity Low_complexity 1 36 0 5 1380 268 299 71 53 chr12 104250616 104250729 -17006801 - PB1 SINE Alu 0 127 13 5 1380 735 325 90 24 chr12 104250741 104251075 -17006455 - MLT1A0 LTR MaLR 0 365 10 5 1380 1450 303 200 84 chr12 104251085 104252639 -17004891 - MLT1A0-int LTR MaLR 0 1735 1 5 1380 629 241 75 19 chr12 104252660 104252821 -17004709 - MTEa LTR MaLR 0 379 210 5 1380 330 250 128 9 chr12 104252839 104252948 -17004582 - MTEa LTR MaLR -233 146 25 5 1380 456 335 42 33 chr12 104252958 104253171 -17004359 - MLT1A0 LTR MaLR -4 361 147 5 1380 828 262 38 0 chr12 104253194 104253377 -17004153 + B3A SINE B2 8 197 -1 5 1380 444 299 43 7 chr12 104253406 104253544 -17003986 - MLT1A0 LTR MaLR -222 143 1 5 1380 291 316 135 45 chr12 104253884 104254129 -17003401 - LTR73 LTR ERV1 -97 475 209 5 1380 23 0 0 0 chr12 104255055 104255078 -17002452 + AT_rich Low_complexity Low_complexity 1 23 0 5 1380 3500 44 2 5 chr12 104255078 104255485 -17002045 - L1Md_F3 LINE L1 -3 6581 6176 5 1380 360 0 0 0 chr12 104255548 104255588 -17001942 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 5 1380 781 199 32 120 chr12 104255771 104255988 -17001542 + B3A SINE B2 1 198 0 5 1380 275 218 140 65 chr12 104256168 104256261 -17001269 + PB1D7 SINE Alu 1 100 -20 5 1380 2400 266 48 10 chr12 104256897 104257580 -16999950 + Lx8 LINE L1 6385 7093 -380 5 1380 662 240 42 100 chr12 104257594 104257680 -16999850 + B3A SINE B2 4 82 -116 5 1380 1644 83 0 25 chr12 104257680 104257916 -16999614 + Lx LINE L1 6419 6648 -6 5 1380 194 0 39 0 chr12 104257921 104257947 -16999583 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1380 662 240 42 100 chr12 104257947 104258044 -16999486 + B3A SINE B2 83 182 -16 5 1380 378 159 0 0 chr12 104258074 104258143 -16999387 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1380 785 276 49 15 chr12 104258190 104258455 -16999075 + Lx8 LINE L1 7149 7422 -51 5 1380 21 36 0 0 chr12 104259595 104259623 -16997907 + AT_rich Low_complexity Low_complexity 1 28 0 5 1380 227 241 0 49 chr12 104260235 104260296 -16997234 + PB1 SINE Alu 59 116 -11 5 1380 594 273 0 20 chr12 104260316 104260462 -16997068 + ID_B1 SINE B4 82 224 0 5 1380 405 313 67 0 chr12 104260790 104260924 -16996606 + B1F1 SINE Alu 1 143 -6 5 1380 186 231 75 19 chr12 104261594 104261647 -16995883 - L2a LINE L2 0 3426 3371 5 1380 1141 244 48 42 chr12 104262555 104262888 -16994642 - Lx9 LINE L1 -349 7295 6961 5 1380 911 255 107 44 chr12 104262924 104263195 -16994335 - B4A SINE B4 -1 291 4 6 1380 817 229 122 5 chr12 104263231 104263420 -16994110 + B3 SINE B2 1 211 -5 6 1380 423 0 0 0 chr12 104263909 104263956 -16993574 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1380 373 329 20 0 chr12 104263975 104264124 -16993406 - L1ME3B LINE L1 -408 5832 5681 6 1380 369 0 0 0 chr12 104264134 104264175 -16993355 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1380 1908 154 74 72 chr12 104264467 104264844 -16992686 - ORR1C1 LTR MaLR 0 378 1 6 1380 1266 54 0 0 chr12 104264922 104265069 -16992461 + B1_Mm SINE Alu 1 147 0 6 1380 189 74 0 0 chr12 104265073 104265100 -16992430 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1380 27 0 0 0 chr12 104265190 104265217 -16992313 + AT_rich Low_complexity Low_complexity 1 27 0 6 1380 1011 272 72 64 chr12 104265300 104265418 -16992112 - L1M2 LINE L1 -1356 4787 4656 6 1380 333 0 0 0 chr12 104265418 104265455 -16992075 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1380 1011 272 72 64 chr12 104265455 104265988 -16991542 - L1M2 LINE L1 -1488 4655 4131 6 1380 215 89 67 0 chr12 104265990 104266035 -16991495 + T-rich Low_complexity Low_complexity 2 49 0 6 1380 333 337 32 16 chr12 104266694 104266884 -16990646 - L1_Mur3 LINE L1 -1811 4069 3877 6 1380 212 290 43 0 chr12 104267027 104267096 -16990434 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 6 1380 501 294 47 84 chr12 104267103 104267172 -16990358 - B4A SINE B4 0 292 86 6 1380 721 253 14 0 chr12 104267172 104267318 -16990212 - B1_Mur1 SINE Alu -1 148 1 6 1380 949 288 17 30 chr12 104267318 104267549 -16989981 - B4A SINE B4 -63 229 2 6 1380 207 0 0 0 chr12 104267553 104267576 -16989954 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 6 1380 1212 211 5 0 chr12 104267716 104267925 -16989605 - B3 SINE B2 -3 213 4 6 1380 180 0 0 0 chr12 104267983 104268003 -16989527 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1380 706 264 35 28 chr12 104268022 104268306 -16989224 - L1M5 LINE L1 -3611 2535 2250 6 1380 401 309 26 20 chr12 104268311 104268463 -16989067 - B4A SINE B4 -126 166 14 6 1380 333 0 0 0 chr12 104268569 104268606 -16988924 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 6 1380 255 61 0 0 chr12 104268809 104268842 -16988688 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 6 1380 443 266 55 0 chr12 104269429 104269538 -16987992 - RSINE1 SINE B4 -10 155 41 6 1380 240 220 0 0 chr12 104270017 104270076 -16987454 - L1M3 LINE L1 -3138 3002 2944 6 1380 942 214 69 11 chr12 104270100 104270289 -16987241 - B3 SINE B2 -12 204 5 6 1380 336 258 154 22 chr12 104270294 104270476 -16987054 - L1MEg LINE L1 -3185 2961 2756 6 1380 375 329 64 13 chr12 104270523 104270680 -16986850 - L1MEg LINE L1 -4826 1416 1252 6 1380 532 331 86 19 chr12 104270809 104271077 -16986453 + B4A SINE B4 3 288 -4 6 1380 358 282 144 68 chr12 104271122 104271358 -16986172 - L1MEg LINE L1 -5149 1093 840 6 1380 701 269 24 24 chr12 104271899 104272063 -16985467 - RSINE1 SINE B4 0 165 2 6 1380 291 316 72 0 chr12 104272112 104272264 -16985266 - L1M6 LINE L1 -5089 1407 1245 6 1380 205 232 29 63 chr12 104272449 104272624 -16984906 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 6 1380 266 121 88 13 chr12 104272719 104272878 -16984652 + (CATA)n Simple_repeat Simple_repeat 2 172 0 6 1380 189 0 0 0 chr12 104273364 104273385 -16984145 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 6 1380 321 228 184 19 chr12 104273434 104273537 -16983993 - B1F SINE Alu -9 140 21 6 1380 301 288 128 44 chr12 104273552 104273803 -16983727 - L1MD LINE L1 -1078 5068 4797 6 1380 907 277 0 91 chr12 104273842 104274093 -16983437 + B4A SINE B4 44 276 -16 6 1380 360 64 0 0 chr12 104274093 104274140 -16983390 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1380 907 277 0 91 chr12 104274140 104274162 -16983368 + B4A SINE B4 277 292 0 6 1380 575 299 58 45 chr12 104274227 104274664 -16982866 - L1MEc LINE L1 -1511 5026 4591 6 1380 476 294 39 58 chr12 104274730 104274936 -16982594 - B4A SINE B4 0 292 91 6 1380 996 312 135 65 chr12 104275033 104276212 -16981318 - L1MEc LINE L1 -2148 4389 3144 6 1380 1268 54 0 0 chr12 104276212 104276359 -16981171 - B1_Mus2 SINE Alu 0 147 1 6 1380 996 312 135 65 chr12 104276359 104276559 -16980971 - L1MEc LINE L1 -3394 3143 2913 6 1380 22 0 0 0 chr12 104276955 104276977 -16980553 + AT_rich Low_complexity Low_complexity 1 22 0 6 1380 353 288 15 0 chr12 104277117 104277249 -16980281 - L1MEc LINE L1 -4666 1967 1823 6 1380 2170 266 67 101 chr12 104277522 104277811 -16979719 - Lx8 LINE L1 -201 7272 6954 6 1380 759 112 0 0 chr12 104277811 104277927 -16979603 + (TG)n Simple_repeat Simple_repeat 1 116 0 6 1380 2170 266 67 101 chr12 104277927 104278141 -16979389 - Lx8 LINE L1 -520 6953 6764 6 1380 964 143 186 6 chr12 104278141 104278324 -16979206 + B3 SINE B2 1 216 0 6 1380 2170 266 67 101 chr12 104278324 104278698 -16978832 - Lx8 LINE L1 -710 6763 6425 6 1380 444 295 50 22 chr12 104278701 104278923 -16978607 - L1MEc LINE L1 -4847 1771 1544 6 1380 241 269 60 23 chr12 104279186 104279319 -16978211 + MER117 DNA MER1_type 28 165 -32 6 1380 272 59 0 0 chr12 104279611 104279645 -16977885 - L1_Mus2 LINE L1 -185 6381 6348 6 1380 358 222 48 64 chr12 104281267 104281392 -16976138 - L1MB5 LINE L1 -8 6166 6044 6 1380 280 247 115 68 chr12 104281704 104281956 -16975574 + RMER10B LTR ERVL 1 264 -134 6 1380 216 0 0 0 chr12 104281956 104281980 -16975550 + (TCC)n Simple_repeat Simple_repeat 1 24 0 6 1380 903 185 0 51 chr12 104281989 104282205 -16975325 + RMER10B LTR ERVL 194 398 0 6 1380 603 219 0 15 chr12 104282306 104282436 -16975094 - B1_Mur1 SINE Alu 0 149 22 6 1380 239 279 16 0 chr12 104282969 104283030 -16974500 + MER58A DNA MER1_type 37 98 -126 6 1380 8263 50 0 4 chr12 104283444 104284435 -16973095 - L1Md_F2 LINE L1 -9 6573 5587 6 1380 305 64 0 60 chr12 104284437 104284487 -16973043 + L1_Mm LINE L1 1316 1362 -4521 6 1380 243 23 22 43 chr12 104284613 104284659 -16972871 + (TGG)n Simple_repeat Simple_repeat 1 45 0 6 1380 230 274 83 19 chr12 104286920 104287028 -16970502 - PB1 SINE Alu 0 127 13 6 1380 245 322 67 0 chr12 104288790 104288880 -16968650 - MLT1A0 LTR MaLR 0 489 394 6 1380 338 288 112 15 chr12 104289087 104289221 -16968309 - MLT1A0 LTR MaLR -261 288 142 6 1380 1786 147 163 3 chr12 104289272 104289627 -16967903 - MTC LTR MaLR -5 416 5 6 1380 407 139 0 14 chr12 104289631 104289704 -16967826 - MTC-int LTR MaLR 0 1258 1187 6 1380 5276 150 27 16 chr12 104289704 104290640 -16966890 - MTC-int LTR MaLR -312 946 1 6 1380 2364 131 88 5 chr12 104290642 104291027 -16966503 - MTC LTR MaLR -4 417 1 6 1380 424 296 92 43 chr12 104291178 104291460 -16966070 - MLT1A0-int LTR MaLR -696 793 498 6 1380 433 313 58 51 chr12 104291620 104291896 -16965634 - B4A SINE B4 -10 282 5 6 1380 225 294 120 53 chr12 104293024 104293157 -16964373 + MLT1G LTR MaLR 268 409 -182 6 1380 534 91 0 0 chr12 104293175 104293252 -16964278 + (CAGAG)n Simple_repeat Simple_repeat 1 77 0 6 1380 405 0 0 0 chr12 104293584 104293629 -16963901 + (TTTTA)n Simple_repeat Simple_repeat 4 48 0 6 1380 229 343 11 56 chr12 104293826 104294005 -16963525 - MLT1A0-int LTR MaLR -1238 171 1 6 1380 1038 97 84 11 chr12 104294547 104294725 -16962805 - L1_Mus3 LINE L1 -4 6634 6444 6 1380 479 148 11 0 chr12 104295034 104295122 -16962408 + A-rich Low_complexity Low_complexity 2 90 0 6 1380 742 288 136 30 chr12 104295294 104295624 -16961906 - MLT1A0 LTR MaLR 0 365 1 6 1380 503 215 196 16 chr12 104295771 104295965 -16961565 - RMER15 LTR ERVL 0 575 347 6 1380 228 300 0 28 chr12 104297879 104297951 -16959579 - MIRm SINE MIR -6 270 201 6 1380 539 289 112 8 chr12 104298584 104298842 -16958688 + B4A SINE B4 2 286 -6 6 1380 432 0 0 0 chr12 104298894 104298942 -16958588 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1380 247 284 97 39 chr12 104299051 104299205 -16958325 - L1M5 LINE L1 -601 5639 5477 6 1380 784 205 23 23 chr12 104299965 104300185 -16957345 - RCHARR1 DNA MER1_type -115 859 640 6 1380 306 0 0 0 chr12 104300553 104300587 -16956943 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1380 249 33 0 0 chr12 104300785 104300815 -16956715 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 6 1380 498 292 7 7 chr12 104301651 104301789 -16955741 + B1F1 SINE Alu 5 142 -7 6 1380 7484 83 6 7 chr12 104303807 104304877 -16952653 - MusHAL1 LINE L1 -1615 1097 29 6 1380 6936 78 18 1 chr12 104304865 104305825 -16951705 + MusHAL1 LINE L1 1101 2076 -636 6 1380 189 74 0 0 chr12 104306061 104306088 -16951442 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1380 2236 201 5 186 chr12 104306173 104306917 -16950613 - RMER19C LTR ERVK -1 610 1 6 1380 21 0 0 0 chr12 104306948 104306969 -16950561 + AT_rich Low_complexity Low_complexity 1 21 0 6 1380 837 155 0 0 chr12 104306995 104307143 -16950387 + CT-rich Low_complexity Low_complexity 1 148 0 6 1380 279 313 0 12 chr12 104307143 104307227 -16950303 - ID4_ SINE ID 0 83 1 6 1380 377 262 0 10 chr12 104307595 104307699 -16949831 + L1M2 LINE L1 5331 5433 -858 6 1380 685 145 128 0 chr12 104307707 104307824 -16949706 + B1_Mur3 SINE Alu 9 140 -9 6 1380 616 285 39 36 chr12 104307862 104308130 -16949400 + L1_Mur2 LINE L1 5408 5682 -204 6 1380 621 0 0 0 chr12 104309604 104309673 -16947857 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 1380 1109 82 0 27 chr12 104309922 104310072 -16947458 - B1_Mm SINE Alu 0 147 2 6 1380 216 200 0 0 chr12 104310095 104310135 -16947395 - ID4 SINE ID -2 81 42 6 1380 262 297 67 50 chr12 104312311 104312481 -16945049 - LTR33A LTR ERVL -306 214 51 6 1380 375 239 249 18 chr12 104313592 104313809 -16943721 - L1MD3 LINE L1 -7 8035 7769 6 1380 32 0 0 0 chr12 104313888 104313920 -16943610 + AT_rich Low_complexity Low_complexity 1 32 0 6 1380 1034 235 20 0 chr12 104313949 104314149 -16943381 - B3 SINE B2 -11 205 2 6 1380 432 349 0 0 chr12 104314248 104314380 -16943150 - B1F1 SINE Alu -5 144 13 6 1380 247 276 0 13 chr12 104314408 104314485 -16943045 - ID4_ SINE ID -6 77 2 6 1380 338 281 45 45 chr12 104315003 104315201 -16942329 - L1MD3 LINE L1 -432 7610 7413 6 1380 543 225 92 75 chr12 104315204 104315377 -16942153 + B3A SINE B2 15 190 -8 6 1380 679 268 113 74 chr12 104315489 104315799 -16941731 + MER2 DNA MER2_type 23 344 -1 6 1380 298 306 113 88 chr12 104315836 104316155 -16941375 - L1MD3 LINE L1 -779 7263 6937 6 1380 998 72 240 7 chr12 104316197 104316351 -16941179 - B2_Mm2 SINE B2 -5 190 1 6 1380 728 204 15 22 chr12 104316354 104316489 -16941041 - B1_Mur4 SINE Alu -15 135 2 6 1380 570 279 58 32 chr12 104316490 104316534 -16940996 - L1MD3 LINE L1 -1074 6921 6877 6 1380 286 299 0 13 chr12 104316534 104316612 -16940918 - ID4_ SINE ID -4 79 3 6 1380 570 279 58 32 chr12 104316612 104316756 -16940774 - L1MD3 LINE L1 -1119 6876 6728 6 1380 815 154 5 0 chr12 104317326 104317541 -16939989 + (TG)n Simple_repeat Simple_repeat 1 216 0 6 1380 261 0 0 0 chr12 104318193 104318222 -16939308 + (C)n Simple_repeat Simple_repeat 1 29 0 6 1380 291 303 7 60 chr12 104318248 104318399 -16939131 - L1MA7 LINE L1 -324 5967 5825 6 1380 243 225 124 0 chr12 104318495 104318584 -16938946 + ID4_ SINE ID 5 104 -48 7 1380 239 280 31 16 chr12 104319992 104320020 -16937510 - RMER17C LTR ERVK -138 272 243 7 1380 730 96 0 31 chr12 104320020 104320182 -16937348 + (CA)n Simple_repeat Simple_repeat 2 158 0 7 1380 239 280 31 16 chr12 104320182 104320280 -16937250 - RMER17C LTR ERVK -168 242 144 7 1380 270 0 0 0 chr12 104320299 104320329 -16937201 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1380 342 200 13 0 chr12 104320825 104320900 -16936630 - PB1D10 SINE Alu -7 110 35 7 1380 658 266 137 0 chr12 104321038 104321286 -16936244 - L1MB2 LINE L1 -152 6019 5738 7 1380 214 319 14 0 chr12 104323014 104323086 -16934444 - MIR3 SINE MIR -48 160 88 7 1380 384 301 16 16 chr12 104323446 104323571 -16933959 - B1F SINE Alu -3 146 22 7 1380 377 282 32 84 chr12 104323560 104323715 -16933815 - MER2 DNA MER2_type -27 318 172 7 1380 386 196 0 67 chr12 104323714 104323789 -16933741 - ID4_ SINE ID -5 78 9 7 1380 224 350 10 0 chr12 104324086 104324186 -16933344 + PB1D10 SINE Alu 17 117 0 7 1380 29 0 0 0 chr12 104324589 104324618 -16932912 + AT_rich Low_complexity Low_complexity 1 29 0 7 1380 24 0 0 0 chr12 104324794 104324818 -16932712 + AT_rich Low_complexity Low_complexity 1 24 0 7 1380 305 152 0 33 chr12 104325017 104325078 -16932452 + L1_Mm LINE L1 2777 2835 -3048 7 1380 895 251 95 25 chr12 104325069 104325384 -16932146 - Lx8 LINE L1 -10 7463 7127 7 1380 22 0 0 0 chr12 104325754 104325776 -16931754 + AT_rich Low_complexity Low_complexity 1 22 0 7 1380 891 195 112 11 chr12 104325776 104325963 -16931567 - B3 SINE B2 -10 206 1 7 1380 296 139 298 66 chr12 104326035 104326156 -16931374 - B2_Mm2 SINE B2 0 195 47 7 1380 1035 57 7 0 chr12 104326168 104326309 -16931221 - B2_Mm1t SINE B2 -51 142 1 7 1380 212 130 43 0 chr12 104326310 104326356 -16931174 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 7 1380 955 158 20 0 chr12 104326362 104326508 -16931022 - B1_Mur1 SINE Alu 0 149 1 7 1380 610 195 17 0 chr12 104327145 104327263 -16930267 - PB1D9 SINE Alu 0 120 1 7 1380 1135 181 28 129 chr12 104327445 104327763 -16929767 - RMER1C Other Other 0 1342 1057 7 1380 31 44 0 0 chr12 104328158 104328203 -16929327 + AT_rich Low_complexity Low_complexity 1 45 0 7 1380 917 299 45 8 chr12 104328221 104328487 -16929043 + B4A SINE B4 9 284 -8 7 1380 462 146 0 0 chr12 104328495 104328577 -16928953 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1380 22 80 0 0 chr12 104330720 104330770 -16926760 + AT_rich Low_complexity Low_complexity 1 50 0 7 1380 585 238 7 7 chr12 104331106 104331254 -16926276 - MLT1A0 LTR MaLR -19 346 199 7 1380 329 305 16 56 chr12 104331562 104331687 -16925843 - MLT1A0 LTR MaLR -245 120 1 7 1380 445 287 17 98 chr12 104331916 104332090 -16925440 + RSINE1 SINE B4 2 161 -4 7 1381 212 229 33 0 chr12 104334014 104334075 -16923455 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 7 1381 405 0 0 0 chr12 104335682 104335727 -16921803 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 7 1381 1076 188 38 19 chr12 104335899 104336110 -16921420 + B3 SINE B2 2 216 0 7 1381 1107 224 37 19 chr12 104338382 104338650 -16918880 - MTD LTR MaLR -146 273 1 7 1381 221 281 22 0 chr12 104338767 104338856 -16918674 + (CATATA)n Simple_repeat Simple_repeat 1 91 0 7 1381 229 278 0 0 chr12 104338864 104338918 -16918612 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1381 539 229 102 20 chr12 104340743 104340939 -16916591 - B3 SINE B2 -4 212 1 7 1381 212 215 62 0 chr12 104341209 104341274 -16916256 + (CATG)n Simple_repeat Simple_repeat 1 69 0 7 1381 285 29 0 0 chr12 104342145 104342179 -16915351 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1381 27 0 0 0 chr12 104342335 104342362 -16915168 + AT_rich Low_complexity Low_complexity 1 27 0 7 1381 995 318 11 18 chr12 104343340 104343622 -16913908 + B4A SINE B4 11 290 -2 7 1381 209 323 21 0 chr12 104343637 104343730 -16913800 + (CATA)n Simple_repeat Simple_repeat 4 98 0 7 1381 307 202 10 10 chr12 104343773 104343873 -16913657 + (CA)n Simple_repeat Simple_repeat 2 101 0 7 1381 414 0 0 0 chr12 104344572 104344618 -16912912 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1381 487 281 27 54 chr12 104345030 104345177 -16912353 - RSINE1 SINE B4 -19 146 4 7 1381 927 104 15 7 chr12 104345207 104345342 -16912188 + B1_Mus1 SINE Alu 1 136 -12 7 1381 293 0 0 26 chr12 104345342 104345380 -16912150 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 7 1381 362 198 79 34 chr12 104345417 104345506 -16912024 + PB1D10 SINE Alu 14 106 -11 7 1381 426 216 176 0 chr12 104345670 104345795 -16911735 - B1F SINE Alu -1 148 2 7 1381 438 20 0 0 chr12 104347190 104347241 -16910289 + (TAA)n Simple_repeat Simple_repeat 2 52 0 7 1381 213 94 0 0 chr12 104349719 104349751 -16907779 + (TA)n Simple_repeat Simple_repeat 1 32 0 7 1381 223 246 0 0 chr12 104349878 104349943 -16907587 + A-rich Low_complexity Low_complexity 1 65 0 7 1381 1235 224 87 54 chr12 104351839 104352231 -16905299 - MTD LTR MaLR -14 405 1 7 1381 268 304 148 37 chr12 104353489 104353814 -16903716 + L2a LINE L2 297 657 -2762 7 1381 225 316 0 87 chr12 104353950 104354054 -16903476 + MTEa LTR MaLR 208 302 -77 7 1381 323 335 150 20 chr12 104354158 104354499 -16903031 + L2a LINE L2 1059 1443 -1976 7 1381 230 227 0 13 chr12 104354556 104354632 -16902898 + C-rich Low_complexity Low_complexity 3 77 0 7 1381 642 244 76 68 chr12 104354824 104355088 -16902442 - ORR1E LTR MaLR -6 353 88 7 1381 443 231 47 31 chr12 104355155 104355401 -16902129 + RLTR15 LTR ERVK 48 283 -76 7 1381 519 259 107 22 chr12 104355718 104355943 -16901587 - RLTR12B LTR ERVK -273 255 12 7 1381 461 178 20 0 chr12 104355944 104356045 -16901485 - ORR1E LTR MaLR -256 103 1 7 1381 374 269 204 41 chr12 104356102 104356396 -16901134 + L2a LINE L2 1958 2299 -1120 7 1381 1239 244 81 17 chr12 104356663 104357037 -16900493 - MTD LTR MaLR -21 398 18 7 1381 438 319 66 45 chr12 104357364 104358045 -16899485 + L2a LINE L2 2665 3388 -38 7 1381 920 208 6 22 chr12 104358615 104358797 -16898733 + B3A SINE B2 4 182 -16 7 1381 210 191 0 0 chr12 104358800 104358847 -16898683 + (CATA)n Simple_repeat Simple_repeat 4 50 0 7 1381 574 272 98 83 chr12 104358901 104359178 -16898352 + B4A SINE B4 12 292 0 7 1381 1151 109 212 0 chr12 104359714 104359898 -16897632 + URR1A DNA MER1_type 1 223 -3 7 1381 252 86 0 0 chr12 104360254 104360289 -16897241 + (CAG)n Simple_repeat Simple_repeat 2 36 0 7 1381 213 154 0 0 chr12 104361505 104361544 -16895986 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 7 1381 459 0 0 0 chr12 104361753 104361804 -16895726 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1381 459 193 0 0 chr12 104362358 104362441 -16895089 + ID4 SINE ID 1 83 0 7 1381 24 0 0 0 chr12 104362516 104362540 -16894990 + AT_rich Low_complexity Low_complexity 1 24 0 7 1381 323 238 0 59 chr12 104362565 104362650 -16894880 + ID4_ SINE ID 4 83 0 7 1381 332 243 0 26 chr12 104365641 104365717 -16891813 - PB1 SINE Alu -15 112 39 7 1381 624 197 109 0 chr12 104366399 104366536 -16890994 - LFSINE_Vert SINE SINE -39 420 269 7 1381 595 229 51 61 chr12 104368874 104369088 -16888442 - B3A SINE B2 -4 212 1 7 1381 29 0 0 0 chr12 104370121 104370150 -16887380 + AT_rich Low_complexity Low_complexity 1 29 0 7 1381 1527 215 119 8 chr12 104370823 104371193 -16886337 - MTD LTR MaLR -8 411 1 7 1381 243 0 0 0 chr12 104371326 104371353 -16886177 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1381 235 177 0 31 chr12 104371553 104371617 -16885913 + GA-rich Low_complexity Low_complexity 2 63 0 7 1381 285 234 12 47 chr12 104374132 104374217 -16883313 - ID4 SINE ID 0 83 2 7 1381 426 267 24 48 chr12 104374395 104374521 -16883009 - B4 SINE B4 0 292 170 7 1381 360 362 65 52 chr12 104374621 104374930 -16882600 - L2a LINE L2 -92 3334 3022 7 1381 880 278 134 30 chr12 104375186 104375679 -16881851 - L1ME2 LINE L1 -34 6130 5587 7 1381 438 256 80 13 chr12 104375732 104375888 -16881642 + B3A SINE B2 14 189 -27 7 1381 320 0 0 24 chr12 104375914 104375955 -16881575 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 7 1381 1058 82 0 0 chr12 104375955 104376089 -16881441 - B1_Mus1 SINE Alu -13 135 2 7 1381 802 283 91 59 chr12 104376104 104376839 -16880691 - L1ME2 LINE L1 -645 5595 4840 7 1381 1066 165 119 5 chr12 104376923 104377124 -16880406 - URR1A DNA MER1_type -2 224 1 7 1381 812 94 0 16 chr12 104377185 104377314 -16880216 + (TTCC)n Simple_repeat Simple_repeat 3 129 0 7 1381 264 317 10 0 chr12 104377388 104377489 -16880041 - PB1D9 SINE Alu 0 120 19 7 1381 432 0 0 0 chr12 104377574 104377622 -16879908 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1381 740 285 37 16 chr12 104377686 104377932 -16879598 - B4 SINE B4 -41 251 1 7 1381 349 263 107 145 chr12 104378021 104378115 -16879415 - L1ME2 LINE L1 -1697 4449 4372 7 1381 1088 100 0 0 chr12 104378115 104378255 -16879275 - B1_Mus1 SINE Alu -7 141 2 7 1381 349 263 107 145 chr12 104378255 104378552 -16878978 - L1ME2 LINE L1 -1775 4371 4073 7 1381 327 339 76 25 chr12 104378811 104379047 -16878483 - B4A SINE B4 -4 288 41 7 1381 262 325 22 25 chr12 104379083 104379305 -16878225 - L1ME2 LINE L1 -2323 3823 3603 7 1381 292 231 30 30 chr12 104381278 104381345 -16876185 - ID4_ SINE ID -15 68 2 7 1381 228 67 0 0 chr12 104381475 104381505 -16876025 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 7 1381 213 154 0 0 chr12 104381597 104381636 -16875894 + A-rich Low_complexity Low_complexity 1 39 0 7 1381 557 266 39 0 chr12 104382276 104382404 -16875126 + RSINE1 SINE B4 3 135 -30 7 1381 585 0 0 0 chr12 104382404 104382469 -16875061 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1381 197 222 39 77 chr12 104383103 104383181 -16874349 - MER5A DNA MER1_type -96 93 19 7 1381 354 239 0 0 chr12 104383711 104383803 -16873727 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 7 1381 216 0 0 0 chr12 104383876 104383900 -16873630 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 7 1381 450 243 0 0 chr12 104384004 104384144 -16873386 + (TG)n Simple_repeat Simple_repeat 1 140 0 7 1381 757 296 85 11 chr12 104384150 104384420 -16873110 - B4 SINE B4 -2 290 1 7 1381 185 359 60 27 chr12 104384758 104384907 -16872623 + L2c LINE L2 2751 2904 -515 8 1381 231 284 60 104 chr12 104385074 104385209 -16872321 + L2c LINE L2 3029 3156 -219 8 1381 208 364 38 8 chr12 104385490 104385623 -16871907 - MIR3 SINE MIR -70 138 2 8 1381 835 218 20 45 chr12 104385848 104386050 -16871480 + B3A SINE B2 2 198 0 8 1381 517 363 98 60 chr12 104388382 104389018 -16868512 + L1MEe LINE L1 3 662 -5457 8 1381 184 273 0 0 chr12 104389025 104389069 -16868461 + L3 LINE CR1 2198 2241 -2248 8 1381 463 301 62 50 chr12 104389214 104389435 -16868095 + L1MEe LINE L1 876 1080 -5145 8 1381 911 308 127 93 chr12 104389828 104390066 -16867464 + L1MEe LINE L1 1364 1605 -4544 8 1381 791 168 57 172 chr12 104390066 104390244 -16867286 - B3 SINE B2 0 216 38 8 1381 1192 63 0 0 chr12 104390244 104390387 -16867143 + B1_Mus2 SINE Alu 2 144 -3 8 1381 791 168 57 172 chr12 104390387 104390452 -16867078 - B3 SINE B2 -179 37 1 8 1381 911 308 127 93 chr12 104390452 104390928 -16866602 + L1MEe LINE L1 1606 2075 -4074 8 1381 1042 122 10 60 chr12 104390928 104391128 -16866402 + B2_Mm2 SINE B2 4 193 -2 8 1381 911 308 127 93 chr12 104391128 104391294 -16866236 + L1MEe LINE L1 2076 2275 -3874 8 1381 729 300 9 98 chr12 104391807 104392125 -16865405 - B4A SINE B4 -2 290 1 8 1381 558 124 0 0 chr12 104392151 104392240 -16865290 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 8 1381 233 29 0 29 chr12 104392901 104392936 -16864594 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1381 1178 68 0 20 chr12 104392937 104393086 -16864444 - B1_Mus1 SINE Alu 0 148 3 8 1381 377 257 10 0 chr12 104393086 104393187 -16864343 - RCHARR1 DNA MER1_type -88 886 785 8 1381 859 235 5 58 chr12 104393193 104393401 -16864129 + B3A SINE B2 1 197 -1 8 1381 1864 239 56 9 chr12 104393422 104393541 -16863989 - RCHARR1 DNA MER1_type -188 786 658 8 1381 252 0 0 0 chr12 104393541 104393569 -16863961 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 8 1381 1864 239 56 9 chr12 104393569 104393914 -16863616 - RCHARR1 DNA MER1_type -317 657 301 8 1381 405 0 0 0 chr12 104393979 104394024 -16863506 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1381 399 21 0 0 chr12 104394024 104394071 -16863459 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1381 305 160 56 9 chr12 104394077 104394184 -16863346 + (TG)n Simple_repeat Simple_repeat 2 113 0 8 1381 26 0 0 0 chr12 104394333 104394359 -16863171 + GC_rich Low_complexity Low_complexity 1 26 0 8 1381 468 163 152 68 chr12 104395043 104395175 -16862355 + B3A SINE B2 2 144 -54 8 1381 360 0 0 0 chr12 104395178 104395218 -16862312 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1381 477 0 0 0 chr12 104396296 104396349 -16861181 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1381 351 0 0 0 chr12 104396349 104396387 -16861143 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1381 189 0 0 0 chr12 104396493 104396514 -16861016 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1381 557 157 39 16 chr12 104397773 104397902 -16859628 - Lx9 LINE L1 0 7644 7513 8 1381 189 0 0 0 chr12 104399993 104400014 -16857516 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 8 1381 180 250 0 0 chr12 104400233 104400277 -16857253 + MIRb SINE MIR 182 225 -43 8 1381 267 289 0 0 chr12 104400442 104400518 -16857012 - L1M5 LINE L1 -420 5704 5629 8 1381 314 236 21 51 chr12 104400783 104400881 -16856649 - MLT1J1 LTR MaLR -366 146 45 8 1381 446 141 321 36 chr12 104401106 104401243 -16856287 - B3 SINE B2 -2 214 39 8 1381 322 272 39 0 chr12 104401382 104401485 -16856045 - L1MA10 LINE L1 -7 6327 6221 8 1381 180 0 0 0 chr12 104403695 104403715 -16853815 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1381 235 262 33 0 chr12 104405628 104405689 -16851841 - MIR SINE MIR -102 106 44 8 1381 184 300 98 98 chr12 104405729 104405851 -16851679 - L2b LINE L2 -8 3418 3297 8 1381 221 354 0 4 chr12 104405905 104405992 -16851538 - L2b LINE L2 -183 3204 3116 8 1381 216 0 0 0 chr12 104405992 104406016 -16851514 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1381 1062 248 3 54 chr12 104406109 104406403 -16851127 + Lx6 LINE L1 7156 7434 -26 8 1381 956 210 53 5 chr12 104406764 104406970 -16850560 + B3 SINE B2 1 216 0 8 1381 23 0 0 0 chr12 104409250 104409273 -16848257 + AT_rich Low_complexity Low_complexity 1 23 0 8 1381 250 98 19 19 chr12 104410129 104410181 -16847349 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 8 1381 23 0 0 0 chr12 104411126 104411149 -16846381 + AT_rich Low_complexity Low_complexity 1 23 0 8 1381 22 0 0 0 chr12 104412793 104412815 -16844715 + AT_rich Low_complexity Low_complexity 1 22 0 8 1381 295 322 17 17 chr12 104412857 104413034 -16844496 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 1381 236 325 13 0 chr12 104413066 104413143 -16844387 - RSINE1 SINE B4 0 165 88 8 1381 319 320 0 0 chr12 104413318 104413393 -16844137 - RSINE1 SINE B4 -87 78 4 8 1381 370 281 67 26 chr12 104413548 104414150 -16843380 - L1ME2 LINE L1 -344 6069 5457 8 1381 342 0 0 0 chr12 104414522 104414560 -16842970 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1381 289 273 34 0 chr12 104414562 104414650 -16842880 - PB1D10 SINE Alu -16 101 11 8 1381 416 291 99 27 chr12 104414696 104415098 -16842432 - L1ME2 LINE L1 -1127 5192 4756 8 1381 690 300 73 39 chr12 104415318 104415821 -16841709 - L1MEc LINE L1 -3617 2702 2186 8 1381 632 322 65 29 chr12 104415826 104416104 -16841426 - L1ME2 LINE L1 -3051 3268 2981 8 1381 360 0 0 0 chr12 104416106 104416146 -16841384 + (TA)n Simple_repeat Simple_repeat 2 41 0 8 1381 204 67 0 0 chr12 104416244 104416274 -16841256 + (ATG)n Simple_repeat Simple_repeat 2 31 0 8 1381 224 287 18 33 chr12 104416282 104416343 -16841187 - ID4_ SINE ID -16 67 8 8 1381 590 71 12 0 chr12 104416343 104416427 -16841103 + (TTTC)n Simple_repeat Simple_repeat 2 86 0 8 1381 564 248 22 14 chr12 104416430 104416569 -16840961 - B1F SINE Alu -7 142 3 8 1381 733 230 79 10 chr12 104416690 104416892 -16840638 - B3 SINE B2 0 216 1 8 1381 315 263 101 0 chr12 104417068 104417167 -16840363 - PB1D7 SINE Alu -11 109 1 8 1381 343 340 118 9 chr12 104417225 104417445 -16840085 - L1ME2 LINE L1 -4812 1588 1345 8 1381 344 310 86 8 chr12 104417571 104417688 -16839842 + RSINE1 SINE B4 4 129 -36 8 1381 577 82 21 0 chr12 104417693 104417790 -16839740 + (TC)n Simple_repeat Simple_repeat 2 100 0 8 1381 261 0 0 0 chr12 104417790 104417819 -16839711 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1381 593 355 82 49 chr12 104417864 104418436 -16839094 - L1ME2 LINE L1 -5468 932 342 8 1381 546 16 0 0 chr12 104418595 104418658 -16838872 + (TC)n Simple_repeat Simple_repeat 1 63 0 8 1381 1328 260 120 2 chr12 104418976 104419392 -16838138 - MLT1C LTR MaLR 0 467 3 8 1381 209 286 16 0 chr12 104420794 104420857 -16836673 - MIR SINE MIR -57 151 88 8 1381 257 229 79 67 chr12 104423284 104423373 -16834157 + L2c LINE L2 3298 3387 0 8 1381 335 300 138 43 chr12 104424244 104424432 -16833098 + MER58A DNA MER1_type 17 222 -2 8 1381 329 250 57 64 chr12 104424516 104424657 -16832873 + MIR SINE MIR 123 262 0 8 1381 328 291 142 0 chr12 104424642 104424776 -16832754 - MIRb SINE MIR -108 160 8 8 1381 273 208 68 27 chr12 104425040 104425114 -16832416 + MIR SINE MIR 68 144 -118 8 1381 321 174 70 28 chr12 104426305 104426376 -16831154 + PB1D10 SINE Alu 40 113 -4 8 1381 266 324 14 27 chr12 104426390 104426463 -16831067 + ID4_ SINE ID 8 79 -4 8 1381 192 330 149 44 chr12 104426615 104426729 -16830801 - MIRb SINE MIR -18 250 125 8 1381 787 226 49 16 chr12 104432263 104432447 -16825083 + B3 SINE B2 25 214 -2 8 1381 258 167 15 15 chr12 104432899 104432966 -16824564 + (TA)n Simple_repeat Simple_repeat 2 68 0 8 1381 276 30 0 0 chr12 104435091 104435124 -16822406 + (CAGA)n Simple_repeat Simple_repeat 1 33 0 8 1381 362 293 24 54 chr12 104435972 104436138 -16821392 - HAL1-2a_MD LINE L1 -517 2507 2347 8 1381 238 303 11 21 chr12 104436145 104436337 -16821193 + (TGG)n Simple_repeat Simple_repeat 1 189 0 8 1381 666 308 35 10 chr12 104437689 104437886 -16819644 + MIR SINE MIR 56 257 -5 8 1381 356 0 0 22 chr12 104438408 104438453 -16819077 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1381 366 199 21 23 chr12 104439157 104439251 -16818279 + PB1D7 SINE Alu 21 111 -9 8 1381 186 43 0 0 chr12 104439814 104439837 -16817693 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 8 1381 180 211 26 0 chr12 104440023 104440061 -16817469 + MIRm SINE MIR 110 148 -128 8 1381 319 333 104 38 chr12 104442013 104442148 -16815382 - L1ME2 LINE L1 -134 6030 5897 8 1381 195 42 0 0 chr12 104442148 104442172 -16815358 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 8 1381 319 333 104 38 chr12 104442172 104442260 -16815270 - L1ME2 LINE L1 -268 5896 5785 8 1381 396 0 0 0 chr12 104442260 104442304 -16815226 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1381 319 333 104 38 chr12 104442304 104442444 -16815086 - L1ME2 LINE L1 -380 5784 5644 8 1381 182 91 0 29 chr12 104442464 104442498 -16815032 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1381 838 308 148 15 chr12 104444567 104445387 -16812143 + L1MB1 LINE L1 5012 5927 -262 8 1381 324 0 0 0 chr12 104445403 104445439 -16812091 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1381 276 170 0 0 chr12 104445719 104445772 -16811758 + (ATGGTG)n Simple_repeat Simple_repeat 1 53 0 8 1381 228 313 30 0 chr12 104445781 104445848 -16811682 + L1MEc LINE L1 211 279 -6121 8 1381 809 325 28 40 chr12 104446246 104446570 -16810960 - MTE2b LTR MaLR -2 377 58 8 1381 233 298 137 26 chr12 104446756 104446873 -16810657 + B4A SINE B4 14 143 -149 8 1381 987 129 0 0 chr12 104446915 104447093 -16810437 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 1381 804 198 3 3 chr12 104447120 104447788 -16809742 + (CA)n Simple_repeat Simple_repeat 1 667 0 8 1381 2557 74 6 0 chr12 104448586 104448924 -16808606 - Lx2A1 LINE L1 -341 6667 6328 8 1381 1491 93 72 16 chr12 104448924 104449175 -16808355 + Lx2A1 LINE L1 6744 7008 0 8 1381 271 220 47 35 chr12 104450741 104450826 -16806704 + MLT1L LTR MaLR 219 304 -306 8 1381 309 43 106 0 chr12 104451173 104451220 -16806310 - HAL1-3A_ME LINE L1 -831 2027 1976 8 1381 423 266 0 0 chr12 104451240 104451413 -16806117 + (TG)n Simple_repeat Simple_repeat 1 173 0 8 1381 475 230 0 22 chr12 104451467 104451649 -16805881 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1381 185 318 187 13 chr12 104452070 104452220 -16805310 - L2 LINE L2 -2063 1356 1181 8 1381 186 43 0 0 chr12 104453972 104453995 -16803535 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1381 468 284 43 91 chr12 104454903 104454970 -16802560 - MER3 DNA MER1_type -6 203 143 8 1381 631 316 42 42 chr12 104454970 104455254 -16802276 + B4 SINE B4 2 285 -7 8 1381 468 284 43 91 chr12 104455254 104455265 -16802265 - MER3 DNA MER1_type -67 142 142 8 1381 432 0 0 0 chr12 104455265 104455313 -16802217 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1381 468 284 43 91 chr12 104455313 104455442 -16802088 - MER3 DNA MER1_type -67 142 5 8 1381 202 284 104 10 chr12 104456101 104456197 -16801333 + MIR SINE MIR 47 151 -57 8 1381 864 247 183 4 chr12 104457300 104457521 -16800009 + B4 SINE B4 7 256 -36 8 1381 396 0 0 0 chr12 104457521 104457565 -16799965 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1381 864 247 183 4 chr12 104457565 104457583 -16799947 + B4 SINE B4 257 287 -5 8 1381 222 312 65 0 chr12 104457590 104457667 -16799863 - ID4_ SINE ID 0 83 2 9 1381 270 342 82 11 chr12 104459223 104459406 -16798124 + L2 LINE L2 2281 2476 -943 9 1381 236 328 8 48 chr12 104461425 104461550 -16795980 + GA-rich Low_complexity Low_complexity 1 120 0 9 1381 334 234 83 18 chr12 104464106 104464215 -16793315 + LTR16C LTR ERVL 374 489 0 9 1382 222 289 0 0 chr12 104464804 104464894 -16792636 + (CTATT)n Simple_repeat Simple_repeat 4 93 0 9 1382 333 0 0 0 chr12 104466230 104466267 -16791263 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 9 1382 796 185 6 41 chr12 104467130 104467299 -16790231 - URR1B DNA MER1_type -62 163 1 9 1382 213 325 93 35 chr12 104467408 104467802 -16789728 + L2c LINE L2 2955 3421 -5 9 1382 435 229 38 0 chr12 104468003 104468108 -16789422 + B1F SINE Alu 8 116 -33 9 1382 271 234 51 13 chr12 104468124 104468202 -16789328 + ID SINE ID 1 81 -143 9 1382 315 0 0 0 chr12 104468210 104468245 -16789285 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1382 472 313 78 63 chr12 104468270 104468601 -16788929 + MLT1G3 LTR MaLR 67 402 -193 9 1382 237 297 119 0 chr12 104468973 104469074 -16788456 + PB1D7 SINE Alu 1 113 -7 9 1382 225 246 128 12 chr12 104469128 104469255 -16788275 + MIR SINE MIR 26 166 -96 9 1382 216 0 0 0 chr12 104469564 104469588 -16787942 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1382 539 279 36 22 chr12 104469731 104469870 -16787660 - ID_B1 SINE B4 -3 221 81 9 1382 398 20 20 0 chr12 104469891 104469942 -16787588 + (TC)n Simple_repeat Simple_repeat 2 53 0 9 1382 392 55 0 18 chr12 104469946 104470002 -16787528 + (ATG)n Simple_repeat Simple_repeat 1 55 0 9 1382 463 232 71 0 chr12 104470005 104470104 -16787426 - RSINE1 SINE B4 -35 130 25 9 1382 333 271 35 0 chr12 104470642 104470727 -16786803 - MER81 DNA AcHobo -25 89 2 9 1382 465 19 0 0 chr12 104470776 104470830 -16786700 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1382 412 345 60 103 chr12 104471048 104471419 -16786111 + ORR1E LTR MaLR 3 357 -13 9 1382 258 365 20 20 chr12 104471490 104471638 -16785892 + MER113 DNA MER1_type 269 416 -105 9 1382 234 323 30 50 chr12 104471782 104471883 -16785647 + MLT1A0 LTR MaLR 1 99 -266 9 1382 291 200 0 16 chr12 104472088 104472149 -16785381 + MLT1A1 LTR MaLR 349 408 0 9 1382 207 0 0 0 chr12 104473753 104473776 -16783754 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 9 1382 233 200 0 0 chr12 104473814 104473859 -16783671 + G-rich Low_complexity Low_complexity 4 48 0 9 1382 635 290 16 5 chr12 104476405 104476592 -16780938 - MTE2b LTR MaLR 0 379 191 9 1382 416 250 33 41 chr12 104476592 104476713 -16780817 + MTE-int LTR MaLR 225 344 -1236 9 1382 1694 159 62 48 chr12 104482130 104482571 -16774959 - RLTR31A_Mm LTR ERVK -1 583 88 9 1382 813 243 5 31 chr12 104483038 104483229 -16774301 + ID_B1 SINE B4 7 192 -32 9 1382 623 364 64 79 chr12 104483745 104484291 -16773239 - MLT2B3 LTR ERVL 0 554 17 9 1382 401 273 89 22 chr12 104484495 104484630 -16772900 - B3A SINE B2 -54 144 1 9 1382 425 234 63 0 chr12 104485111 104485222 -16772308 + RLTR11A2 LTR ERVK 410 527 0 9 1382 363 167 0 0 chr12 104485490 104485556 -16771974 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1382 342 267 0 0 chr12 104485562 104485648 -16771882 - B4 SINE B4 0 292 207 9 1382 324 0 0 0 chr12 104485648 104485684 -16771846 + (TC)n Simple_repeat Simple_repeat 2 37 0 9 1382 444 19 0 0 chr12 104485684 104485736 -16771794 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1382 180 0 0 0 chr12 104485768 104485788 -16771742 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1382 586 260 108 27 chr12 104485809 104485995 -16771535 - B4A SINE B4 -86 206 6 9 1382 369 0 0 0 chr12 104486066 104486107 -16771423 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 9 1382 1814 202 34 3 chr12 104486107 104486506 -16771024 + RMER1B Other Other 220 699 -367 9 1382 286 203 0 17 chr12 104486568 104486628 -16770902 + B4 SINE B4 1 59 -233 9 1382 1858 130 82 9 chr12 104486976 104487318 -16770212 + ORR1B2 LTR MaLR 1 367 0 9 1382 917 117 20 27 chr12 104487438 104487587 -16769943 + B1_Mur4 SINE Alu 2 149 -1 9 1382 585 76 0 0 chr12 104487587 104487666 -16769864 + (GA)n Simple_repeat Simple_repeat 2 80 0 9 1382 322 234 140 0 chr12 104488106 104488213 -16769317 + ERVL-E-int LTR ERVL 4798 4919 -748 9 1382 356 286 126 0 chr12 104488265 104488384 -16769146 + MLT1B LTR MaLR 1 134 -256 9 1382 286 308 76 17 chr12 104489450 104489569 -16767961 + LTR16D LTR ERVL 236 361 -290 9 1382 296 234 0 30 chr12 104489979 104490045 -16767485 + PB1D10 SINE Alu 54 117 0 9 1382 459 0 0 0 chr12 104490837 104490888 -16766642 + (TA)n Simple_repeat Simple_repeat 1 51 0 9 1382 471 95 0 62 chr12 104490893 104491005 -16766525 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 9 1382 332 306 8 0 chr12 104491016 104491140 -16766390 + (CA)n Simple_repeat Simple_repeat 2 126 0 9 1382 304 120 0 51 chr12 104491159 104491238 -16766292 + (CAGA)n Simple_repeat Simple_repeat 4 78 0 9 1382 262 320 0 0 chr12 104491241 104491319 -16766211 - ID4 SINE ID -3 80 3 9 1382 429 288 90 58 chr12 104492293 104492481 -16765049 + B3A SINE B2 4 197 -1 9 1382 279 274 0 23 chr12 104492510 104492596 -16764934 + MLT1A1 LTR MaLR 313 396 -12 9 1382 191 324 24 12 chr12 104492679 104492783 -16764747 + MIRc SINE MIR 96 203 -65 9 1382 558 281 19 12 chr12 104493031 104493191 -16764339 + RLTR18B LTR ERVK 11 171 -341 9 1382 426 322 43 48 chr12 104493191 104493400 -16764130 - RLTR23 LTR ERV1 0 430 223 9 1382 901 203 73 10 chr12 104493683 104493887 -16763643 + RLTR18B LTR ERVK 291 507 -5 9 1382 1006 71 57 0 chr12 104493985 104494125 -16763405 - B1_Mus1 SINE Alu 0 148 1 9 1382 826 288 151 8 chr12 104494193 104494550 -16762980 + MLT1A1 LTR MaLR 1 408 0 9 1382 479 226 19 9 chr12 104494600 104494707 -16762823 - RSINE1 SINE B4 -37 128 21 9 1382 263 222 68 14 chr12 104494741 104494814 -16762716 + L2a LINE L2 3253 3329 -97 9 1382 534 53 21 11 chr12 104496027 104496122 -16761408 - L1Md_F3 LINE L1 0 6584 6489 9 1382 240 259 17 0 chr12 104496502 104496560 -16760970 + MIR SINE MIR 87 145 -63 9 1382 854 319 97 17 chr12 104496826 104497126 -16760404 - MLT1J LTR MaLR -177 335 12 9 1382 1388 194 13 23 chr12 104497406 104497707 -16759823 - RLTR10E LTR ERVK -13 298 1 9 1382 234 261 84 32 chr12 104498261 104498356 -16759174 + MLT1A1 LTR MaLR 305 404 -4 9 1382 231 363 137 30 chr12 104498470 104498740 -16758790 + MLT1H LTR MaLR 208 506 -43 9 1382 372 219 0 0 chr12 104498790 104498863 -16758667 + RSINE1 SINE B4 4 76 -89 9 1382 903 43 0 0 chr12 104498886 104499002 -16758528 + (TC)n Simple_repeat Simple_repeat 1 116 0 9 1382 252 0 0 0 chr12 104499002 104499029 -16758501 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1382 451 265 107 27 chr12 104499222 104499447 -16758083 + MER58D DNA MER1_type 43 285 -101 9 1382 2685 24 45 15 chr12 104499547 104499883 -16757647 + ORR1A0 LTR MaLR 1 346 0 9 1382 695 278 167 114 chr12 104501224 104501541 -16755989 - MTD LTR MaLR -32 347 14 1 1382 842 229 51 47 chr12 104501648 104501863 -16755667 + B3 SINE B2 1 216 0 2 1382 268 157 56 11 chr12 104501988 104502078 -16755452 + GA-rich Low_complexity Low_complexity 1 94 0 3 1382 424 301 9 41 chr12 104502079 104502246 -16755284 + B4 SINE B4 69 274 -18 4 1382 1069 61 0 43 chr12 104502254 104502442 -16755088 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1382 693 0 0 0 chr12 104502449 104502526 -16755004 + (GAA)n Simple_repeat Simple_repeat 3 79 0 6 1382 428 246 0 8 chr12 104502522 104502645 -16754885 + G-rich Low_complexity Low_complexity 6 127 0 7 1382 1413 51 0 0 chr12 104502645 104502823 -16754707 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 8 1382 324 0 0 0 chr12 104502826 104502862 -16754668 + (GAGAA)n Simple_repeat Simple_repeat 1 36 0 9 1382 26 30 0 0 chr12 104503314 104503347 -16754183 + AT_rich Low_complexity Low_complexity 1 33 0 1 1382 294 232 150 10 chr12 104503349 104503449 -16754081 + L1M3 LINE L1 5658 5771 -409 1 1382 540 218 177 6 chr12 104503465 104503640 -16753890 + B3 SINE B2 5 209 -7 1 1382 326 243 0 14 chr12 104503661 104503732 -16753798 + ID_B1 SINE B4 146 215 -9 1 1382 411 236 9 9 chr12 104503762 104503994 -16753536 + (CA)n Simple_repeat Simple_repeat 1 232 0 1 1382 295 319 70 17 chr12 104504352 104504467 -16753063 - ID_B1 SINE B4 -103 121 1 1 1382 253 399 23 17 chr12 104506021 104506197 -16751333 + MIRb SINE MIR 20 196 -72 1 1382 308 170 0 83 chr12 104506663 104506772 -16750758 + (TTTG)n Simple_repeat Simple_repeat 3 102 0 1 1382 1934 199 27 15 chr12 104506772 104507174 -16750356 + MTD LTR MaLR 13 419 0 1 1382 191 302 0 0 chr12 104507354 104507397 -16750133 + L2b LINE L2 3313 3355 -20 1 1382 216 182 0 0 chr12 104507743 104507787 -16749743 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1382 21 0 0 0 chr12 104508057 104508078 -16749452 + AT_rich Low_complexity Low_complexity 1 21 0 2 1382 227 203 0 17 chr12 104508574 104508634 -16748896 + CT-rich Low_complexity Low_complexity 3 61 0 2 1382 230 292 10 68 chr12 104509855 104509958 -16747572 - MIRc SINE MIR -119 149 53 2 1382 320 398 0 0 chr12 104510694 104510807 -16746723 - MIRb SINE MIR -99 169 57 2 1382 626 88 24 8 chr12 104510838 104510964 -16746566 + (TG)n Simple_repeat Simple_repeat 1 128 0 2 1382 211 281 35 0 chr12 104510969 104511026 -16746504 - ID4 SINE ID -13 70 12 2 1382 387 289 21 0 chr12 104511058 104511155 -16746375 - B4 SINE B4 -86 206 108 2 1382 272 308 13 0 chr12 104511221 104511299 -16746231 - B4 SINE B4 -212 80 2 2 1382 252 0 0 0 chr12 104511337 104511365 -16746165 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1382 295 315 47 32 chr12 104511966 104512156 -16745374 + L1MB8 LINE L1 5717 5909 -269 2 1382 1064 272 14 3 chr12 104512280 104512564 -16744966 + B4 SINE B4 2 288 -4 3 1382 357 345 92 0 chr12 104512728 104512902 -16744628 - MER2 DNA MER2_type -105 240 51 3 1382 337 315 72 29 chr12 104512931 104513132 -16744398 + L1MB2 LINE L1 5918 6128 -43 3 1382 900 265 37 0 chr12 104513132 104513347 -16744183 + ID_B1 SINE B4 2 224 0 3 1382 301 275 0 28 chr12 104513562 104513633 -16743897 + L1MEg LINE L1 2040 2108 -4134 3 1382 279 317 0 0 chr12 104513681 104513777 -16743753 - ID2 SINE ID -54 98 3 3 1382 395 241 72 14 chr12 104513787 104513926 -16743604 - B1F SINE Alu -2 147 1 3 1382 390 42 0 0 chr12 104514054 104514102 -16743428 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 3 1382 343 294 68 36 chr12 104514269 104514576 -16742954 + L1MEg LINE L1 5023 5339 -807 3 1382 1094 261 34 40 chr12 104515333 104515503 -16742027 - MTEb LTR MaLR -22 357 189 3 1382 2952 64 26 3 chr12 104515503 104515894 -16741636 + MTB LTR MaLR 1 400 0 3 1382 1094 261 34 40 chr12 104515894 104516050 -16741480 - MTEb LTR MaLR -191 188 33 3 1382 241 282 128 12 chr12 104516314 104516400 -16741130 - MLT1J LTR MaLR -300 212 117 4 1382 270 281 19 174 chr12 104516401 104516444 -16741086 - MLT1J LTR MaLR -370 142 102 4 1382 918 275 69 3 chr12 104516444 104516808 -16740722 + MLT1B LTR MaLR 3 390 0 4 1382 270 281 19 174 chr12 104516808 104516919 -16740611 - MLT1J LTR MaLR -411 101 12 4 1382 225 303 65 43 chr12 104517728 104517866 -16739664 - Charlie4 DNA MER1_type -1636 325 185 4 1382 195 42 0 0 chr12 104517980 104518004 -16739526 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1382 525 55 0 0 chr12 104518036 104518109 -16739421 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 4 1382 208 276 8 16 chr12 104518117 104518173 -16739357 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 4 1382 2405 64 3 58 chr12 104518173 104518519 -16739011 + ORR1A2 LTR MaLR 1 327 0 4 1382 208 276 8 16 chr12 104518519 104518548 -16738982 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 4 1382 504 0 0 0 chr12 104518548 104518604 -16738926 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1382 208 276 8 16 chr12 104518604 104518642 -16738888 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 4 1382 453 50 0 0 chr12 104520564 104520624 -16736906 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1382 294 236 32 51 chr12 104520674 104520830 -16736700 + (TCTCTG)n Simple_repeat Simple_repeat 3 155 0 5 1382 438 297 121 35 chr12 104522211 104522270 -16735260 - B3 SINE B2 0 216 162 5 1382 219 69 0 0 chr12 104522270 104522299 -16735231 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1382 479 249 167 1 chr12 104522299 104522438 -16735092 - B3A SINE B2 -55 161 1 5 1382 3042 99 2 40 chr12 104523161 104523632 -16733898 + MT2C_Mm LTR ERVL 1 453 -22 5 1382 2463 61 3 41 chr12 104526013 104526353 -16731177 + ORR1A2 LTR MaLR 1 327 0 5 1382 396 269 23 23 chr12 104526431 104526602 -16730928 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 5 1382 231 376 0 12 chr12 104526611 104526697 -16730833 - L2b LINE L2 -7 3368 3284 5 1382 282 299 14 15 chr12 104526791 104526889 -16730641 + MIRb SINE MIR 156 256 -12 5 1382 203 256 0 0 chr12 104526999 104527042 -16730488 - L2b LINE L2 -11 3364 3322 5 1382 279 314 150 23 chr12 104527158 104527331 -16730199 - MIR SINE MIR -13 249 55 6 1382 2950 116 108 18 chr12 104527802 104528313 -16729217 - RMER15 LTR ERVL 0 575 19 6 1382 752 311 81 31 chr12 104529217 104529539 -16727991 + MLT1A1 LTR MaLR 70 407 -1 6 1382 322 317 102 53 chr12 104529633 104529827 -16727703 - MLT1C LTR MaLR -257 210 1 6 1382 315 0 0 0 chr12 104531492 104531527 -16726003 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1382 432 55 0 0 chr12 104531532 104531587 -16725943 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1382 351 313 82 92 chr12 104531795 104532199 -16725331 - RMER10A LTR ERVL -25 417 18 6 1382 236 303 147 0 chr12 104532292 104532307 -16725223 + B1_Mur1 SINE Alu 25 149 0 6 1382 374 234 106 0 chr12 104532307 104532401 -16725129 + ID_B1 SINE B4 121 224 0 6 1382 192 77 0 0 chr12 104532401 104532427 -16725103 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1382 455 176 12 0 chr12 104532682 104532767 -16724763 + B3A SINE B2 4 89 -109 7 1382 561 42 0 0 chr12 104532791 104532863 -16724667 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1382 705 319 154 12 chr12 104533447 104533777 -16723753 - RMER5 LTR ERV1 0 534 158 7 1382 750 166 119 0 chr12 104533804 104533955 -16723575 + URR1A DNA MER1_type 58 226 0 7 1382 630 178 15 23 chr12 104533957 104534089 -16723441 - RMER5 LTR ERV1 -363 171 41 7 1382 1555 234 44 17 chr12 104535682 104536042 -16721488 - ORR1D1 LTR MaLR 0 374 5 7 1382 351 169 0 0 chr12 104536128 104536199 -16721331 + (ATG)n Simple_repeat Simple_repeat 3 73 0 7 1382 569 307 88 20 chr12 104536346 104536595 -16720935 + B4A SINE B4 1 266 -26 7 1382 306 0 0 0 chr12 104536597 104536631 -16720899 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1382 299 358 0 0 chr12 104538058 104538139 -16719391 - B4A SINE B4 -206 86 6 7 1382 204 97 0 0 chr12 104542291 104542322 -16715208 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 7 1382 469 169 11 43 chr12 104542334 104542520 -16715010 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 8 1382 186 216 0 73 chr12 104543408 104543463 -16714067 + L2b LINE L2 3314 3364 -11 8 1382 1941 121 118 0 chr12 104543498 104543669 -16713861 + ORR1C2 LTR MaLR 2 173 -211 8 1382 495 0 0 0 chr12 104543669 104543724 -16713806 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1382 1941 121 118 0 chr12 104543724 104543891 -16713639 + ORR1C2 LTR MaLR 174 379 -5 8 1382 253 217 0 0 chr12 104544899 104544945 -16712585 - ID4_ SINE ID -29 54 9 8 1382 251 304 0 12 chr12 104544949 104545029 -16712501 - PB1D10 SINE Alu -21 96 18 8 1382 522 135 239 8 chr12 104545232 104545366 -16712164 + Lx7 LINE L1 7532 7696 0 8 1382 207 279 29 29 chr12 104545638 104545708 -16711822 - MIRb SINE MIR -171 97 28 8 1382 506 272 3 3 chr12 104546144 104546429 -16711101 + (TCCA)n Simple_repeat Simple_repeat 1 285 0 8 1382 244 295 83 10 chr12 104546475 104546571 -16710959 - MLT1F1 LTR MaLR -455 114 12 8 1382 21 0 0 0 chr12 104547034 104547055 -16710475 + AT_rich Low_complexity Low_complexity 1 21 0 9 1382 3627 75 30 0 chr12 104547093 104547596 -16709934 - L1_Mus4 LINE L1 -3 6633 6116 9 1382 3102 75 0 0 chr12 104547653 104548053 -16709477 + MTB LTR MaLR 1 400 0 9 1382 253 321 123 29 chr12 104548293 104548431 -16709099 + MIRb SINE MIR 57 207 -61 9 1382 1274 168 9 0 chr12 104548431 104548645 -16708885 + B3 SINE B2 1 216 0 9 1382 443 248 34 34 chr12 104548742 104548859 -16708671 + PB1D10 SINE Alu 1 117 0 9 1382 330 281 95 15 chr12 104549095 104549232 -16708298 - MER117 DNA MER1_type -49 148 1 9 1382 387 0 0 0 chr12 104552843 104552886 -16704644 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1382 225 324 14 0 chr12 104553690 104553761 -16703769 + MIRc SINE MIR 61 132 -136 9 1382 27 0 0 0 chr12 104555163 104555190 -16702340 + GC_rich Low_complexity Low_complexity 1 27 0 9 1382 21 0 0 0 chr12 104555238 104555259 -16702271 + AT_rich Low_complexity Low_complexity 1 21 0 1 1382 532 247 179 6 chr12 104556838 104557024 -16700506 + B3A SINE B2 1 210 -6 1 1382 1189 146 14 32 chr12 104557055 104557275 -16700255 - URR1B DNA MER1_type 0 225 10 1 1382 277 291 48 48 chr12 104557423 104557506 -16700024 + ID4_ SINE ID 1 83 0 1 1382 834 106 0 0 chr12 104558599 104558722 -16698808 + (CTAGG)n Simple_repeat Simple_repeat 3 125 0 1 1382 777 87 0 0 chr12 104560273 104560388 -16697142 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 1 1382 725 168 0 0 chr12 104560871 104560996 -16696534 + URR1B DNA MER1_type 101 225 0 1 1382 299 253 78 102 chr12 104560996 104561039 -16696491 - CYRA11_Mm Unknown Y-chromosome -446 171 133 1 1382 225 264 0 0 chr12 104562275 104562328 -16695202 + MIRm SINE MIR 99 151 -125 1 1382 515 283 64 37 chr12 104562573 104562760 -16694770 - B3A SINE B2 0 198 7 1 1382 413 268 77 23 chr12 104562774 104562904 -16694626 - B1F SINE Alu -1 148 12 1 1382 1017 190 5 28 chr12 104564038 104564249 -16693281 + B3 SINE B2 8 213 -3 1 1382 251 317 60 12 chr12 104564408 104564491 -16693039 - MIRb SINE MIR -26 182 96 1 1382 315 0 0 0 chr12 104564661 104564696 -16692834 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1382 431 346 79 5 chr12 104564772 104564987 -16692543 - MIR SINE MIR -25 237 7 1 1382 323 0 48 0 chr12 104569185 104569227 -16688303 + (TTGG)n Simple_repeat Simple_repeat 3 46 0 1 1382 691 205 277 0 chr12 104569228 104569394 -16688136 - ID_B1 SINE B4 -11 213 2 1 1382 614 210 46 18 chr12 104569464 104569607 -16687923 + B3A SINE B2 1 157 -38 1 1382 480 48 0 0 chr12 104569607 104569670 -16687860 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1382 360 227 156 94 chr12 104569670 104569706 -16687824 + B2_Mm2 SINE B2 158 190 -5 1 1382 197 389 123 18 chr12 104569993 104570163 -16687367 + MIRc SINE MIR 19 206 -62 1 1382 318 244 183 0 chr12 104570573 104570754 -16686776 + MIRm SINE MIR 47 267 -9 1 1382 236 85 0 41 chr12 104570957 104571006 -16686524 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1382 413 271 0 45 chr12 104571034 104571146 -16686384 + MIR SINE MIR 44 150 -58 1 1382 365 294 101 0 chr12 104571191 104571310 -16686220 + MIR3 SINE MIR 30 160 -48 1 1382 387 352 21 1 chr12 104571797 104571967 -16685563 - MIR SINE MIR -74 194 14 1 1382 222 264 108 62 chr12 104573389 104573518 -16684012 + L2c LINE L2 3122 3256 -131 1 1382 210 349 7 79 chr12 104573537 104573708 -16683822 - MIRc SINE MIR -74 194 33 1 1382 180 344 96 52 chr12 104576942 104577077 -16680453 + MIRm SINE MIR 13 153 -123 1 1382 975 282 28 100 chr12 104577277 104577667 -16679863 + MTE2a LTR MaLR 1 362 -17 1 1382 289 266 62 117 chr12 104577748 104577910 -16679620 + ORR1E LTR MaLR 158 310 -49 1 1382 202 251 44 72 chr12 104578697 104578788 -16678742 + MIRm SINE MIR 69 162 -114 1 1382 991 124 11 0 chr12 104580661 104580838 -16676692 + (GGA)n Simple_repeat Simple_repeat 2 180 0 1 1382 1134 89 0 27 chr12 104580867 104581052 -16676478 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1382 432 0 0 0 chr12 104582612 104582660 -16674870 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1382 515 280 45 0 chr12 104582662 104582794 -16674736 - RSINE1 SINE B4 -18 147 10 1 1382 21 36 0 0 chr12 104582829 104582857 -16674673 + AT_rich Low_complexity Low_complexity 1 28 0 1 1382 412 298 22 30 chr12 104582863 104582998 -16674532 + B1F SINE Alu 8 141 -8 1 1382 221 204 41 0 chr12 104583129 104583178 -16674352 + G-rich Low_complexity Low_complexity 1 51 0 1 1382 198 284 273 0 chr12 104583309 104583397 -16674133 + MIRb SINE MIR 29 140 -128 1 1382 432 301 181 0 chr12 104583473 104583689 -16673841 + MER2 DNA MER2_type 24 278 -67 1 1382 843 209 21 63 chr12 104584235 104584424 -16673106 - B3A SINE B2 -16 182 2 1 1382 416 307 0 43 chr12 104584472 104584659 -16672871 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 1 1382 582 225 0 0 chr12 104584660 104584838 -16672692 + (CCCA)n Simple_repeat Simple_repeat 2 179 0 1 1382 221 209 15 0 chr12 104584852 104584919 -16672611 + (CCCA)n Simple_repeat Simple_repeat 2 69 0 1 1382 182 222 19 0 chr12 104585047 104585101 -16672429 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 1 1382 365 0 0 22 chr12 104587918 104587964 -16669566 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1382 640 262 183 12 chr12 104588010 104588250 -16669280 - B4A SINE B4 -8 284 4 1 1382 258 247 10 41 chr12 104588354 104588451 -16669079 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 1382 288 288 49 0 chr12 104588451 104588562 -16668968 + MER2 DNA MER2_type 1 121 -224 1 1382 1564 236 50 57 chr12 104589094 104589516 -16668014 + MTD LTR MaLR 1 419 0 1 1382 243 164 127 0 chr12 104589535 104589590 -16667940 - MIRc SINE MIR -118 150 89 1 1382 2079 111 3 36 chr12 104589641 104589977 -16667553 - ORR1A2 LTR MaLR -2 325 1 1 1382 1490 222 32 40 chr12 104590056 104590427 -16667103 - ORR1D2 LTR MaLR 0 370 3 1 1382 1270 142 65 28 chr12 104590665 104590882 -16666648 + URR1B DNA MER1_type 1 225 0 1 1382 604 289 83 18 chr12 104590914 104591143 -16666387 + RMER15 LTR ERVL 317 560 -15 1 1382 219 194 14 139 chr12 104591313 104591385 -16666145 - MIR SINE MIR -59 149 87 1 1382 249 33 0 0 chr12 104591484 104591514 -16666016 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1382 240 412 15 0 chr12 104592246 104592377 -16665153 + MIRb SINE MIR 37 169 -99 1 1382 624 115 22 44 chr12 104593594 104593776 -16663754 + (CAGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1382 282 151 0 54 chr12 104595041 104595097 -16662433 + B1_Mus2 SINE Alu 2 54 -93 1 1382 222 197 47 47 chr12 104595042 104595106 -16662424 + ID_B1 SINE B4 84 147 -77 1 1382 255 0 0 160 chr12 104595106 104595237 -16662293 + (CAGAG)n Simple_repeat Simple_repeat 1 110 0 1 1382 552 165 29 0 chr12 104595240 104595343 -16662187 + B1_Mur2 SINE Alu 42 147 -2 1 1383 240 258 157 0 chr12 104595745 104595834 -16661696 - MIR3 SINE MIR -27 181 79 1 1383 437 0 0 19 chr12 104596160 104596214 -16661316 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1 1383 297 307 35 106 chr12 104598607 104598749 -16658781 + MIRc SINE MIR 73 204 -58 1 1383 232 216 78 0 chr12 104598784 104598886 -16658644 + (TA)n Simple_repeat Simple_repeat 2 111 0 1 1383 256 318 79 8 chr12 104598975 104599102 -16658428 + MER20 DNA MER1_type 13 148 -71 1 1383 245 163 0 0 chr12 104599875 104599918 -16657612 + PB1D10 SINE Alu 47 89 -28 1 1383 221 329 6 40 chr12 104601226 104601400 -16656130 + GA-rich Low_complexity Low_complexity 4 171 0 1 1383 352 295 61 15 chr12 104602429 104602560 -16654970 - MER53 DNA hAT 0 193 57 1 1383 735 273 48 27 chr12 104602804 104603098 -16654432 - RMER10A LTR ERVL -13 429 130 1 1383 204 240 117 68 chr12 104603303 104603406 -16654124 + MIRc SINE MIR 39 146 -122 1 1383 244 267 31 44 chr12 104603712 104603826 -16653704 - MLT1J1 LTR MaLR -334 114 1 1 1383 300 200 0 0 chr12 104604371 104604436 -16653094 + (CTA)n Simple_repeat Simple_repeat 1 65 0 1 1383 302 278 93 40 chr12 104605491 104605641 -16651889 - MLT1E1A LTR MaLR -77 603 446 1 1383 374 279 128 0 chr12 104606725 104606897 -16650633 + MIRc SINE MIR 9 202 -66 1 1383 217 95 0 73 chr12 104607162 104607230 -16650300 + (CCCTG)n Simple_repeat Simple_repeat 3 65 0 1 1383 258 32 0 0 chr12 104607264 104607295 -16650235 + (TCCTG)n Simple_repeat Simple_repeat 1 31 0 1 1383 408 240 113 30 chr12 104607469 104607602 -16649928 - B1F SINE Alu -1 148 5 1 1383 440 62 0 15 chr12 104608180 104608245 -16649285 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1383 780 287 42 93 chr12 104608329 104608762 -16648768 + MTE2a LTR MaLR 1 406 -13 1 1383 281 188 29 26 chr12 104609788 104609909 -16647621 + MIRc SINE MIR 52 175 -33 1 1383 215 279 11 11 chr12 104610848 104610935 -16646595 + (CAGAGA)n Simple_repeat Simple_repeat 6 92 0 1 1383 438 306 9 0 chr12 104611561 104611669 -16645861 - PB1D10 SINE Alu -8 109 1 1 1383 2459 167 17 5 chr12 104612200 104612609 -16644921 + MTC LTR MaLR 1 414 -7 1 1383 187 207 44 147 chr12 104612835 104612903 -16644627 + L4 LINE RTE 1677 1737 -292 1 1383 195 185 71 36 chr12 104613057 104613113 -16644417 + L2 LINE L2 1321 1378 -2041 1 1383 1154 82 0 0 chr12 104613118 104613265 -16644265 + B1_Mus2 SINE Alu 1 147 0 1 1383 215 304 0 0 chr12 104614087 104614143 -16643387 + MIR SINE MIR 67 122 -86 1 1383 746 252 78 35 chr12 104615585 104615815 -16641715 - MTEb LTR MaLR -1 378 139 1 1383 1291 238 113 8 chr12 104616131 104616495 -16641035 + MTD LTR MaLR 18 419 0 1 1383 552 305 0 0 chr12 104616500 104616631 -16640899 + RSINE1 SINE B4 35 165 0 1 1383 228 67 0 0 chr12 104617047 104617077 -16640453 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1383 296 339 0 55 chr12 104617451 104617579 -16639951 + MLT1H2 LTR MaLR 87 207 -282 1 1383 297 0 0 0 chr12 104617703 104617736 -16639794 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1383 706 270 47 11 chr12 104617829 104618020 -16639510 + B3 SINE B2 7 204 -12 1 1383 726 291 0 27 chr12 104618046 104618230 -16639300 + B3A SINE B2 2 180 -18 1 1383 300 216 58 41 chr12 104618289 104618410 -16639120 + L1ME4a LINE L1 6002 6124 0 1 1383 272 297 62 71 chr12 104618648 104618858 -16638672 - RMER5 LTR ERV1 -5 529 322 1 1383 10760 121 84 12 chr12 104618712 104620475 -16637055 - ORR1A2-int LTR MaLR -17 1946 52 1 1383 342 45 0 0 chr12 104620475 104620519 -16637011 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1383 10760 121 84 12 chr12 104620519 104620568 -16636962 - ORR1A2-int LTR MaLR -1912 51 3 1 1383 2086 107 27 56 chr12 104620569 104620906 -16636624 - ORR1A2 LTR MaLR 0 327 1 1 1383 349 206 54 14 chr12 104621010 104621084 -16636446 - ID4 SINE ID -2 81 5 2 1383 491 207 78 55 chr12 104621121 104621249 -16636281 - B1_Mur4 SINE Alu -1 149 19 2 1383 905 139 0 34 chr12 104621318 104621467 -16636063 + B1_Mur4 SINE Alu 1 144 -6 2 1383 597 52 0 0 chr12 104621520 104621597 -16635933 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1383 2229 131 70 50 chr12 104622521 104622978 -16634552 + RMER4A LTR ERVK 1 466 0 2 1383 295 233 96 0 chr12 104623590 104623663 -16633867 + B4 SINE B4 2 81 -211 2 1383 420 216 0 0 chr12 104623663 104623760 -16633770 + (TA)n Simple_repeat Simple_repeat 2 98 0 2 1383 1095 139 0 0 chr12 104623761 104623941 -16633589 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 2 1383 663 250 14 28 chr12 104623959 104624103 -16633427 + B4A SINE B4 89 230 -62 2 1383 548 273 28 28 chr12 104624104 104624285 -16633245 + B3A SINE B2 2 182 -16 2 1383 350 325 64 13 chr12 104624304 104624460 -16633070 - RMER15 LTR ERVL -7 568 405 2 1383 310 195 22 89 chr12 104624560 104624650 -16632880 - HAL1-3A_ME LINE L1 -807 2051 1968 2 1383 620 169 0 6 chr12 104624656 104624835 -16632695 + CT-rich Low_complexity Low_complexity 1 178 0 2 1383 330 26 0 0 chr12 104625058 104625097 -16632433 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1383 733 199 44 0 chr12 104625155 104625291 -16632239 - B1_Mur3 SINE Alu -7 142 1 2 1383 1321 82 49 6 chr12 104625321 104625504 -16632026 + B2_Mm2 SINE B2 1 191 -4 2 1383 2916 56 5 11 chr12 104625532 104625914 -16631616 - MTA_Mm LTR MaLR -16 380 1 2 1383 216 97 0 0 chr12 104625957 104625988 -16631542 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1383 290 326 178 38 chr12 104626036 104626221 -16631309 - Tigger5 DNA MER2_type -2167 239 29 2 1383 247 329 25 0 chr12 104627934 104628013 -16629517 - ID4 SINE ID 0 83 3 2 1383 414 39 0 0 chr12 104628257 104628309 -16629221 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1383 209 320 0 0 chr12 104628715 104628765 -16628765 - MIRm SINE MIR -15 261 212 2 1383 659 303 41 42 chr12 104629576 104629938 -16627592 - MLT1C LTR MaLR -7 383 37 2 1383 1118 326 91 40 chr12 104630498 104631150 -16626380 - MLT1A1-int LTR MaLR -1026 709 25 2 1383 270 287 125 56 chr12 104631172 104631316 -16626214 - MLT1A1 LTR MaLR 0 408 255 2 1383 368 339 51 31 chr12 104631991 104632186 -16625344 + MLT1D LTR MaLR 26 224 -281 2 1383 614 190 40 24 chr12 104632266 104632390 -16625140 - RSINE1 SINE B4 -1 164 39 2 1383 597 213 11 6 chr12 104632656 104632831 -16624699 + (TA)n Simple_repeat Simple_repeat 2 177 0 2 1383 343 259 21 103 chr12 104632849 104633043 -16624487 + L1MCa LINE L1 1845 2022 -4486 2 1383 250 316 0 0 chr12 104633089 104633146 -16624384 - B4A SINE B4 -8 284 228 2 1383 743 256 120 16 chr12 104633240 104633498 -16624032 - B4A SINE B4 -6 286 2 2 1383 516 329 46 23 chr12 104633501 104633719 -16623811 - B4A SINE B4 -69 223 1 2 1383 330 303 40 0 chr12 104634628 104634727 -16622803 - PB1D10 SINE Alu -10 107 5 2 1383 243 0 0 0 chr12 104634762 104634789 -16622741 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1383 297 157 114 0 chr12 104634932 104635002 -16622528 + L1MB4 LINE L1 6098 6175 -5 2 1383 352 252 24 8 chr12 104635772 104635896 -16621634 + (TATATG)n Simple_repeat Simple_repeat 4 129 0 2 1383 372 43 0 0 chr12 104635897 104635943 -16621587 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2 1383 305 250 13 13 chr12 104636187 104636264 -16621266 - ID4 SINE ID -4 79 3 2 1383 288 261 54 43 chr12 104636620 104636712 -16620818 + MIRb SINE MIR 146 238 -30 2 1383 431 325 104 12 chr12 104636897 104637089 -16620441 - B4A SINE B4 -79 213 3 2 1383 279 0 0 0 chr12 104637120 104637151 -16620379 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1383 264 77 0 0 chr12 104637167 104637206 -16620324 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1383 249 271 175 29 chr12 104637223 104637360 -16620170 - RSINE1 SINE B4 -4 161 5 2 1383 1093 82 0 7 chr12 104637371 104637519 -16620011 - B1_Mus1 SINE Alu 0 148 2 2 1383 267 79 0 0 chr12 104638053 104638091 -16619439 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 2 1383 316 276 86 21 chr12 104638843 104638976 -16618554 + L2c LINE L2 3122 3252 -123 2 1383 309 198 10 20 chr12 104639583 104639681 -16617849 + GA-rich Low_complexity Low_complexity 3 99 0 2 1383 268 291 109 73 chr12 104639734 104639871 -16617659 - RSINE1 SINE B4 0 165 24 2 1383 796 190 141 0 chr12 104640237 104640421 -16617109 - B3 SINE B2 -1 215 6 2 1383 200 138 0 0 chr12 104640880 104640909 -16616621 + MIRc SINE MIR 121 149 -119 2 1383 246 322 178 17 chr12 104641942 104642122 -16615408 + Charlie8 DNA MER1_type 81 289 -2139 2 1383 200 281 46 15 chr12 104644323 104644388 -16613142 + MIR SINE MIR 45 111 -97 2 1383 255 246 16 16 chr12 104645090 104645152 -16612378 + PB1D10 SINE Alu 23 84 -33 2 1383 759 161 95 0 chr12 104647477 104647614 -16609916 - B1_Mur4 SINE Alu 0 150 1 2 1383 1150 246 80 55 chr12 104649928 104650289 -16607241 + ORR1D2 LTR MaLR 1 370 0 2 1383 1613 177 149 38 chr12 104650676 104651046 -16606484 + MTD LTR MaLR 1 411 -8 2 1383 2251 114 13 0 chr12 104651994 104652302 -16605228 + ORR1A2 LTR MaLR 8 319 -8 2 1383 5155 202 105 28 chr12 104652503 104653766 -16603764 + Lx7 LINE L1 6336 7696 0 2 1383 210 37 0 0 chr12 104653779 104653806 -16603724 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1383 378 42 0 0 chr12 104654334 104654382 -16603148 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1383 264 319 115 47 chr12 104654553 104654701 -16602829 - MIRb SINE MIR -82 186 29 2 1383 213 368 32 0 chr12 104654909 104655004 -16602526 + MIR SINE MIR 60 157 -105 2 1383 197 323 120 10 chr12 104655122 104655222 -16602308 - MIR SINE MIR -130 132 22 2 1383 1424 310 99 52 chr12 104658164 104658759 -16598771 + Tigger7 DNA MER2_type 7 629 -1862 2 1383 520 271 85 0 chr12 104658912 104659041 -16598489 + RSINE1 SINE B4 3 142 -23 2 1383 197 42 41 41 chr12 104659172 104659221 -16598309 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 2 1383 417 260 77 24 chr12 104659303 104659512 -16598018 + L1MEc LINE L1 1639 1858 -4542 2 1383 417 302 126 73 chr12 104659532 104659793 -16597737 + L1MEc LINE L1 1909 2183 -4217 2 1383 285 326 69 69 chr12 104659965 104660110 -16597420 + MER21B LTR ERV1 290 434 -429 2 1383 509 104 58 68 chr12 104660429 104660532 -16596998 - B1F2 SINE Alu -1 148 47 2 1383 248 218 11 33 chr12 104660792 104660882 -16596648 + L1MEc LINE L1 2245 2332 -4068 2 1383 269 274 128 8 chr12 104660915 104661040 -16596490 + L1MEc LINE L1 2456 2595 -3724 2 1383 391 237 147 20 chr12 104661160 104661382 -16596148 + L1M4 LINE L1 3437 3687 -2459 2 1383 321 256 219 16 chr12 104661404 104661422 -16596108 - L1M5 LINE L1 -2182 3964 3939 2 1383 1435 71 11 5 chr12 104661422 104661607 -16595923 + B2_Mm2 SINE B2 1 186 -9 2 1383 321 256 246 19 chr12 104661607 104661835 -16595695 - L1M5 LINE L1 -2208 3938 3639 2 1383 222 350 41 59 chr12 104662975 104663145 -16594385 + MIR3 SINE MIR 3 169 -39 2 1383 393 250 109 25 chr12 104663305 104663424 -16594106 + ID_B1 SINE B4 43 171 -53 2 1383 335 207 85 0 chr12 104663358 104663440 -16594090 + PB1D10 SINE Alu 21 109 -8 2 1383 403 288 146 47 chr12 104663518 104663689 -16593841 + MIRb SINE MIR 42 229 -39 2 1383 222 266 34 102 chr12 104664473 104664513 -16593017 - B4A SINE B4 -202 90 58 2 1383 1302 97 0 6 chr12 104664513 104664690 -16592840 + B2_Mm2 SINE B2 1 176 -19 2 1383 222 266 34 102 chr12 104664690 104664737 -16592793 - B4A SINE B4 -235 57 9 2 1383 1004 197 16 21 chr12 104664971 104665185 -16592345 + B3 SINE B2 2 193 -2 2 1383 1063 139 41 0 chr12 104665188 104665360 -16592170 + B2_Mm1t SINE B2 1 179 -14 2 1383 238 218 0 83 chr12 104665401 104665461 -16592069 + B2_Mm2 SINE B2 47 101 -94 2 1383 369 281 172 13 chr12 104665517 104666060 -16591470 + L1MA4A LINE L1 5216 5898 -399 2 1383 3021 105 57 11 chr12 104666066 104666520 -16591010 - MT2C_Mm LTR ERVL 0 475 1 2 1383 249 301 84 64 chr12 104666662 104666960 -16590570 + L1MA4A LINE L1 5991 6294 -6 2 1383 200 217 22 0 chr12 104666979 104667025 -16590505 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1383 551 275 47 71 chr12 104667015 104667312 -16590218 - B4A SINE B4 0 292 3 2 1383 453 338 0 0 chr12 104667376 104667515 -16590015 + ID_B1 SINE B4 85 223 -1 2 1383 542 215 14 56 chr12 104668198 104668341 -16589189 + B1_Mus1 SINE Alu 12 148 0 2 1383 201 39 0 0 chr12 104668785 104668811 -16588719 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1383 308 335 102 11 chr12 104668903 104669090 -16588440 - B4A SINE B4 -88 204 1 2 1383 1082 231 9 0 chr12 104669152 104669364 -16588166 + B3 SINE B2 3 216 0 2 1383 282 269 38 13 chr12 104669519 104669546 -16587984 - ID4_ SINE ID 0 83 56 2 1383 3553 78 2 37 chr12 104669546 104670038 -16587492 + MT2C_Mm LTR ERVL 1 475 0 2 1383 282 269 38 13 chr12 104670038 104670089 -16587441 - ID4_ SINE ID -28 55 3 2 1383 211 378 9 9 chr12 104670089 104670201 -16587329 - PB1D10 SINE Alu -1 116 5 2 1383 699 187 1 3 chr12 104670236 104670357 -16587173 + B1_Mur2 SINE Alu 2 120 0 2 1383 525 32 0 0 chr12 104670379 104670442 -16587088 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1383 595 315 90 0 chr12 104670498 104670676 -16586854 + ID_B1 SINE B4 3 196 -28 2 1383 353 236 58 79 chr12 104671188 104671339 -16586191 + B3 SINE B2 2 216 0 2 1383 1714 176 28 85 chr12 104672830 104673252 -16584278 - RMER10B LTR ERVL 0 398 1 2 1383 1228 34 0 20 chr12 104674348 104674499 -16583031 + B1_Mus1 SINE Alu 1 148 0 2 1383 214 175 0 24 chr12 104674500 104674582 -16582948 + (CAAA)n Simple_repeat Simple_repeat 2 81 0 2 1383 278 167 0 16 chr12 104675150 104675211 -16582319 + CT-rich Low_complexity Low_complexity 2 61 0 2 1383 257 341 0 89 chr12 104675211 104675301 -16582229 - B1F SINE Alu -8 141 60 2 1383 396 256 15 70 chr12 104675291 104675456 -16582074 + ORR1D1 LTR MaLR 67 228 -146 2 1383 2606 204 112 10 chr12 104676294 104676909 -16580621 - RLTR33 LTR ERVK 0 678 1 3 1383 378 212 35 0 chr12 104679180 104679265 -16578265 + RLTR14-int LTR ERV1 828 915 -4402 3 1383 243 61 0 0 chr12 104682049 104682082 -16575448 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1383 342 0 0 0 chr12 104682085 104682123 -16575407 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1383 234 0 0 0 chr12 104682123 104682148 -16575382 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 1383 329 224 78 39 chr12 104682331 104682433 -16575097 - RMER5 LTR ERV1 -94 440 335 3 1383 422 175 16 40 chr12 104682445 104682456 -16575074 + (CATATA)n Simple_repeat Simple_repeat 2 12 0 3 1383 1918 89 31 336 chr12 104682456 104683203 -16574327 - MURVY-LTR LTR ERV1 0 519 1 3 1383 422 175 16 40 chr12 104683203 104683316 -16574214 + (CATATA)n Simple_repeat Simple_repeat 1 111 0 3 1383 1043 188 10 10 chr12 104684320 104684519 -16573011 - MTC LTR MaLR 0 421 223 3 1383 1868 222 19 12 chr12 104684512 104684935 -16572595 - ORR1D-int LTR MaLR -943 427 2 3 1383 576 253 55 37 chr12 104684951 104685115 -16572415 - B3A SINE B2 -30 168 2 3 1383 430 347 29 29 chr12 104685168 104685242 -16572288 + B3A SINE B2 1 75 -123 3 1383 1685 178 30 22 chr12 104685242 104685645 -16571885 + RMER17C LTR ERVK 1 406 -4 3 1383 430 347 29 29 chr12 104685645 104685745 -16571785 + B3A SINE B2 76 175 -23 3 1383 237 325 8 26 chr12 104685863 104685980 -16571550 - PB1D10 SINE Alu 0 117 3 3 1383 342 67 0 0 chr12 104685994 104686039 -16571491 + (TTG)n Simple_repeat Simple_repeat 2 46 0 3 1383 684 36 0 0 chr12 104686111 104686194 -16571336 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 3 1383 307 240 19 0 chr12 104686449 104686553 -16570977 + (TA)n Simple_repeat Simple_repeat 1 106 0 3 1383 1753 123 4 4 chr12 104686650 104686912 -16570618 - Lx LINE L1 -3 6651 6390 3 1383 414 195 35 0 chr12 104687177 104687264 -16570266 + RLTR14-int LTR ERV1 826 915 -4402 3 1383 250 274 61 40 chr12 104687593 104687692 -16569838 + MER50-int LTR ERV1 2708 2808 -4397 3 1383 284 306 0 12 chr12 104689350 104689512 -16568018 + (CTG)n Simple_repeat Simple_repeat 3 162 0 3 1383 486 0 0 0 chr12 104691029 104691083 -16566447 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1383 198 0 0 0 chr12 104691083 104691104 -16566426 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1383 516 45 0 0 chr12 104691112 104691179 -16566351 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1383 4027 162 82 58 chr12 104691187 104692019 -16565511 + RMER19B LTR ERVK 51 902 0 3 1383 707 78 10 0 chr12 104692395 104692498 -16565032 + (TC)n Simple_repeat Simple_repeat 1 104 0 3 1383 731 118 0 0 chr12 104692498 104692600 -16564930 - B1_Mm SINE Alu -45 102 1 3 1383 992 208 10 10 chr12 104692748 104692947 -16564583 - MTC LTR MaLR 0 421 223 3 1383 1878 224 26 19 chr12 104692940 104693364 -16564166 - ORR1D1-int LTR MaLR -943 427 1 3 1383 537 246 42 0 chr12 104693364 104693506 -16564024 - ORR1D1 LTR MaLR 0 374 227 3 1383 230 244 7 0 chr12 104693540 104693675 -16563855 + (CAGG)n Simple_repeat Simple_repeat 4 139 0 3 1383 1303 176 28 28 chr12 104693675 104693926 -16563604 - ORR1D1 LTR MaLR -123 251 1 3 1383 551 15 15 0 chr12 104695588 104695656 -16561874 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 1383 30017 65 8 2 chr12 104695744 104700254 -16557276 - L1Md_F2 LINE L1 -12 6570 2034 3 1383 41690 8 0 6 chr12 104700254 104706437 -16551093 - L1Md_A LINE L1 0 6582 442 3 1383 6330 66 3 5 chr12 104706438 104707324 -16550206 - L1Md_F2 LINE L1 -3833 2050 1145 3 1383 8286 32 4 3 chr12 104707324 104708281 -16549249 - RLTR13A2 LTR ERVK 0 958 1 3 1383 6191 134 43 93 chr12 104708281 104709529 -16548001 - L1Md_F2 LINE L1 -5472 1144 98 3 1383 490 314 120 96 chr12 104709529 104709710 -16547820 - RMER5 LTR ERV1 -8 526 337 3 1383 234 0 0 0 chr12 104709710 104709736 -16547794 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1383 490 314 120 96 chr12 104709736 104709938 -16547592 - RMER5 LTR ERV1 -198 336 134 3 1383 3396 38 2 2 chr12 104709948 104710344 -16547186 + MTA_Mm LTR MaLR 1 396 0 3 1383 8899 55 2 0 chr12 104710344 104711440 -16546090 + MTA_Mm-int LTR MaLR 1 1098 0 3 1383 666 13 0 12 chr12 104711440 104711520 -16546010 + MTA_Mm LTR MaLR 1 79 -317 3 1383 532 60 0 0 chr12 104711528 104711595 -16545935 + MTB LTR MaLR 334 400 0 3 1383 312 241 15 153 chr12 104711595 104711724 -16545806 - RMER5 LTR ERV1 -422 112 3 3 1383 4533 163 77 15 chr12 104712299 104713146 -16544384 + RMER19B LTR ERVK 4 902 0 3 1383 891 226 20 10 chr12 104713472 104713669 -16543861 - MTC LTR MaLR 0 421 223 3 1383 1990 229 17 2 chr12 104713662 104714083 -16543447 - ORR1D2-int LTR MaLR -943 427 1 3 1383 568 242 18 48 chr12 104714083 104714248 -16543282 - ORR1D2 LTR MaLR 0 370 211 3 1383 243 223 21 21 chr12 104714336 104714367 -16543163 + (TTG)n Simple_repeat Simple_repeat 1 31 0 3 1383 281 336 8 17 chr12 104714367 104714485 -16543045 - PB1D10 SINE Alu 0 117 1 3 1383 243 223 21 21 chr12 104714485 104714549 -16542981 + (TTG)n Simple_repeat Simple_repeat 2 66 0 3 1383 1117 186 15 0 chr12 104714722 104714921 -16542609 + B3 SINE B2 9 210 -6 3 1383 236 292 25 74 chr12 104715259 104715381 -16542149 - MER20B DNA MER1_type -357 426 311 3 1383 385 332 45 22 chr12 104716620 104716884 -16540646 + L1MC LINE L1 3460 3730 -2416 3 1383 210 258 0 46 chr12 104719203 104719268 -16538262 + CT-rich Low_complexity Low_complexity 1 62 0 3 1383 209 163 122 0 chr12 104719268 104719317 -16538213 + MIR3 SINE MIR 106 160 -48 3 1383 21 0 0 0 chr12 104719521 104719542 -16537988 + AT_rich Low_complexity Low_complexity 1 21 0 3 1383 551 256 87 53 chr12 104720342 104720548 -16536982 + URR1B DNA MER1_type 1 213 -12 3 1383 1986 113 12 54 chr12 104722584 104722920 -16534610 + RLTRETN_Mm LTR ERVK 1 322 0 3 1383 771 160 42 0 chr12 104724355 104724474 -16533056 + B3 SINE B2 1 124 -92 3 1383 239 253 86 21 chr12 104724929 104725022 -16532508 + MER87 LTR ERV1 404 502 -39 3 1384 814 114 122 0 chr12 104726593 104726724 -16530806 + B1_Mus1 SINE Alu 2 148 0 3 1384 1245 99 44 0 chr12 104726733 104726915 -16530615 + B2_Mm2 SINE B2 2 191 -4 3 1384 1842 149 87 8 chr12 104727091 104727471 -16530059 - RMER17C LTR ERVK 0 410 1 3 1384 2376 103 19 22 chr12 104727488 104727854 -16529676 - RLTR8 LTR ERVK 0 365 1 3 1384 25 0 0 0 chr12 104728742 104728767 -16528763 + AT_rich Low_complexity Low_complexity 1 25 0 3 1384 292 276 122 0 chr12 104729182 104729280 -16528250 - MLT1A1 LTR MaLR 0 408 299 3 1384 459 35 0 0 chr12 104729686 104729743 -16527787 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1384 244 197 15 29 chr12 104729812 104729880 -16527650 + GA-rich Low_complexity Low_complexity 5 71 0 3 1384 311 244 33 47 chr12 104729998 104730103 -16527427 + B3A SINE B2 1 102 -114 3 1384 234 0 0 0 chr12 104730123 104730149 -16527381 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1384 424 288 58 32 chr12 104730233 104730423 -16527107 + B2_Mm2 SINE B2 1 195 0 3 1384 294 339 27 0 chr12 104730587 104730699 -16526831 + PB1D7 SINE Alu 1 115 -5 3 1384 541 217 11 0 chr12 104730738 104730913 -16526617 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 1384 341 252 7 0 chr12 104730940 104731075 -16526455 + (TG)n Simple_repeat Simple_repeat 1 136 0 3 1384 235 290 35 61 chr12 104731540 104731654 -16525876 + MLT1M LTR MaLR 240 350 -322 3 1384 270 0 0 0 chr12 104731763 104731793 -16525737 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1384 946 17 133 0 chr12 104731793 104731913 -16525617 - B1_Mus1 SINE Alu -11 137 2 3 1384 1285 239 37 61 chr12 104731961 104732340 -16525190 + MTEa LTR MaLR 3 372 -7 3 1384 398 20 20 0 chr12 104732425 104732476 -16525054 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 3 1384 416 324 84 32 chr12 104732684 104733039 -16524491 - MLT1A1 LTR MaLR -1 364 1 3 1384 3483 28 8 0 chr12 104734005 104734398 -16523132 + MTA_Mm LTR MaLR 1 396 0 3 1384 758 246 128 117 chr12 104734422 104734612 -16522918 + B4 SINE B4 8 211 -81 3 1384 877 139 14 27 chr12 104734612 104734760 -16522770 + B1_Mus1 SINE Alu 1 146 -2 3 1384 306 0 0 0 chr12 104734760 104734794 -16522736 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 1384 758 246 128 117 chr12 104734794 104734883 -16522647 + B4 SINE B4 212 290 -2 3 1384 293 254 14 0 chr12 104735272 104735343 -16522187 - Kanga2_a DNA Tc2 -390 498 427 3 1384 297 0 0 0 chr12 104735966 104735999 -16521531 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1384 390 339 61 0 chr12 104736005 104736120 -16521410 - RSINE1 SINE B4 -35 130 9 3 1384 186 43 0 0 chr12 104736121 104736144 -16521386 + (CAGT)n Simple_repeat Simple_repeat 2 24 0 3 1384 22 35 0 0 chr12 104736288 104736317 -16521213 + AT_rich Low_complexity Low_complexity 1 29 0 3 1384 181 30 59 29 chr12 104737501 104737535 -16519995 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 3 1384 852 202 138 5 chr12 104737581 104737770 -16519760 - B3 SINE B2 -1 215 2 3 1384 522 0 0 0 chr12 104737841 104737899 -16519631 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 3 1384 882 246 104 30 chr12 104737992 104738014 -16519516 - ID_B1 SINE B4 -1 223 207 3 1384 1746 178 74 14 chr12 104738014 104738367 -16519163 + ORR1D1 LTR MaLR 1 374 0 3 1384 882 246 104 30 chr12 104738367 104738545 -16518985 - ID_B1 SINE B4 -18 206 8 3 1384 270 21 64 0 chr12 104738877 104738924 -16518606 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 1384 207 184 0 0 chr12 104739775 104739806 -16517724 + T-rich Low_complexity Low_complexity 8 38 0 3 1384 1210 68 0 0 chr12 104739806 104739953 -16517577 - B1_Mus2 SINE Alu 0 147 1 3 1384 240 163 20 0 chr12 104740651 104740700 -16516830 + B3 SINE B2 167 216 0 3 1384 202 109 0 52 chr12 104740772 104740830 -16516700 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1384 641 118 59 0 chr12 104740834 104740936 -16516594 - B1_Mus2 SINE Alu 0 147 40 3 1384 275 229 14 28 chr12 104740877 104740949 -16516581 - RLTR25B LTR ERVK -530 498 428 3 1384 1166 63 0 0 chr12 104740950 104741092 -16516438 - B1_Mus1 SINE Alu -5 143 2 3 1384 533 260 30 61 chr12 104741168 104741332 -16516198 - RLTR14 LTR ERV1 0 382 224 3 1384 248 342 42 67 chr12 104742361 104742480 -16515050 - LTR33 LTR ERVL -296 219 104 3 1384 467 278 30 9 chr12 104743036 104743167 -16514363 - MIRb SINE MIR -85 183 52 3 1384 189 147 0 0 chr12 104743253 104743287 -16514243 + (AGGGGG)n Simple_repeat Simple_repeat 3 36 0 3 1384 279 0 0 0 chr12 104743859 104743890 -16513640 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1384 1033 278 4 13 chr12 104744422 104744669 -16512861 + ORR1E LTR MaLR 24 293 -86 4 1384 4551 43 0 0 chr12 104744702 104745236 -16512294 - L1_Mus2 LINE L1 0 6566 6033 4 1384 550 280 71 56 chr12 104745326 104745666 -16511864 + L1MA9 LINE L1 5911 6255 -57 4 1384 1056 251 11 39 chr12 104745763 104746045 -16511485 - B4 SINE B4 -16 276 3 4 1384 234 308 65 21 chr12 104747228 104747319 -16510211 + B4 SINE B4 1 95 -197 4 1384 550 287 141 22 chr12 104747319 104747504 -16510026 + B3 SINE B2 1 207 -9 4 1384 958 246 20 5 chr12 104747499 104747703 -16509827 + B4 SINE B4 84 290 -2 4 1384 838 280 62 29 chr12 104748608 104748880 -16508650 + B4A SINE B4 4 284 -8 4 1384 363 44 0 0 chr12 104748901 104748946 -16508584 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1384 1344 79 6 11 chr12 104749182 104749362 -16508168 + B2_Mm2 SINE B2 4 182 -13 4 1384 836 69 9 0 chr12 104749362 104749478 -16508052 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 4 1384 264 170 43 0 chr12 104749617 104749664 -16507866 - B1_Mur2 SINE Alu -12 137 89 4 1384 231 276 130 13 chr12 104749664 104749694 -16507836 - ID_B1 SINE B4 -12 212 127 4 1384 289 281 80 126 chr12 104749947 104750248 -16507282 + RMER10A LTR ERVL 129 415 -27 4 1384 466 222 9 83 chr12 104750261 104750369 -16507161 - B1_Mur2 SINE Alu -48 101 2 4 1384 32 26 0 0 chr12 104750646 104750685 -16506845 + AT_rich Low_complexity Low_complexity 1 39 0 4 1384 1212 87 52 0 chr12 104751210 104751383 -16506147 - B2_Mm2 SINE B2 -12 183 2 4 1384 263 282 42 68 chr12 104751424 104751542 -16505988 - MLT1A1 LTR MaLR -293 115 1 4 1384 310 252 75 42 chr12 104751623 104751753 -16505777 - L2b LINE L2 0 3426 3269 4 1384 558 318 190 25 chr12 104753523 104753918 -16503612 + LTR16D LTR ERVL 50 586 -65 4 1384 192 279 72 14 chr12 104754012 104754081 -16503449 - MIR3 SINE MIR -46 162 90 4 1384 313 308 81 63 chr12 104754123 104754234 -16503296 - L2a LINE L2 -16 3410 3298 4 1384 428 291 52 7 chr12 104754487 104754622 -16502908 + MLT1B LTR MaLR 250 390 0 4 1384 279 323 13 136 chr12 104755860 104756014 -16501516 + MTE2a LTR MaLR 240 374 -5 4 1384 230 277 72 149 chr12 104756320 104756528 -16501002 - ORR1E LTR MaLR 0 359 168 4 1384 275 237 34 0 chr12 104756679 104756738 -16500792 - ORR1E LTR MaLR -298 61 1 4 1384 430 323 85 2 chr12 104756869 104757014 -16500516 + B3A SINE B2 62 216 0 4 1384 890 192 31 62 chr12 104757061 104757255 -16500275 + B3 SINE B2 9 196 -20 4 1384 1951 166 43 51 chr12 104757255 104757689 -16499841 + MT2B LTR ERVL 1 595 -6 4 1384 33 66 0 0 chr12 104757700 104757761 -16499769 + AT_rich Low_complexity Low_complexity 1 61 0 4 1384 806 129 48 54 chr12 104757793 104757940 -16499590 - B1_Mur4 SINE Alu 0 150 5 4 1384 436 306 35 83 chr12 104758341 104758422 -16499108 - L1M5 LINE L1 -465 5775 5707 4 1384 1546 58 5 0 chr12 104758422 104758613 -16498917 - B2_Mm1a SINE B2 0 193 2 4 1384 436 306 35 83 chr12 104758613 104758820 -16498710 - L1M5 LINE L1 -534 5706 5501 4 1384 1053 256 53 4 chr12 104758970 104759233 -16498297 - B4A SINE B4 -15 277 2 4 1384 1583 186 76 6 chr12 104759302 104759616 -16497914 - RLTR24 LTR ERV1 0 529 194 4 1384 617 26 0 0 chr12 104759616 104759693 -16497837 + B1_Mm SINE Alu 71 147 0 4 1384 413 66 36 45 chr12 104759694 104759805 -16497725 + (CAAAA)n Simple_repeat Simple_repeat 1 110 0 4 1384 1440 201 19 46 chr12 104759877 104760184 -16497346 - RLTR24 LTR ERV1 -230 299 1 4 1384 3371 48 0 2 chr12 104760224 104760625 -16496905 + MTB LTR MaLR 1 400 0 4 1384 22 0 0 0 chr12 104760629 104760651 -16496879 + AT_rich Low_complexity Low_complexity 1 22 0 4 1384 3484 187 156 83 chr12 104760871 104761881 -16495649 - RLTR25A LTR ERVK -19 1084 1 4 1384 878 296 94 61 chr12 104761973 104762462 -16495068 - MLT1D LTR MaLR 0 505 1 4 1384 983 148 0 0 chr12 104762614 104762763 -16494767 - B1_Mur4 SINE Alu -1 149 1 4 1384 26 64 0 0 chr12 104762768 104762815 -16494715 + AT_rich Low_complexity Low_complexity 1 47 0 4 1384 686 299 2 34 chr12 104762851 104763078 -16494452 - B3A SINE B2 0 216 1 4 1384 285 29 0 0 chr12 104763078 104763112 -16494418 + (TTA)n Simple_repeat Simple_repeat 2 35 0 4 1384 589 270 71 98 chr12 104763135 104763431 -16494099 - B4A SINE B4 -4 288 1 4 1384 194 383 0 0 chr12 104763494 104763554 -16493976 - MIR SINE MIR -187 75 16 4 1384 255 317 105 8 chr12 104763603 104763727 -16493803 + MIRc SINE MIR 82 217 -51 4 1384 5327 138 22 70 chr12 104764301 104765248 -16492282 - RMER19B LTR ERVK 0 902 1 4 1384 661 282 18 41 chr12 104765266 104765628 -16491902 - Tigger7 DNA MER2_type 0 2491 2273 4 1384 579 293 50 10 chr12 104765739 104765939 -16491591 + ID_B1 SINE B4 4 211 -13 4 1384 192 77 0 0 chr12 104765940 104765966 -16491564 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 4 1384 240 86 0 0 chr12 104766302 104766337 -16491193 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1384 611 194 93 0 chr12 104766380 104766488 -16491042 - B1_Mur2 SINE Alu -31 118 1 4 1384 322 286 128 43 chr12 104766390 104766507 -16491023 - B4 SINE B4 -95 197 71 4 1384 941 225 103 54 chr12 104766524 104766960 -16490570 - MT2B LTR ERVL 0 601 1 4 1384 292 301 126 64 chr12 104767101 104767459 -16490071 + L1M5 LINE L1 5258 5637 -557 4 1384 2426 156 8 5 chr12 104767555 104767948 -16489582 + ORR1B1 LTR MaLR 1 394 0 4 1384 226 308 90 0 chr12 104768175 104768253 -16489277 + MTEa LTR MaLR 295 379 0 4 1384 271 191 29 87 chr12 104768611 104768680 -16488850 + RLTR31_Mur LTR ERVK 489 553 0 4 1384 528 16 0 0 chr12 104768784 104768845 -16488685 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1384 2219 155 24 21 chr12 104768858 104769279 -16488251 - RMER10A LTR ERVL -18 424 3 4 1384 390 294 174 83 chr12 104769291 104769532 -16487998 - B4A SINE B4 -18 274 12 4 1384 443 217 103 52 chr12 104769533 104769669 -16487861 - RSINE1 SINE B4 0 165 23 4 1384 585 291 93 0 chr12 104769660 104769832 -16487698 - B3 SINE B2 -27 189 2 4 1384 216 0 0 0 chr12 104770075 104770099 -16487431 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1384 24 32 0 0 chr12 104770550 104770581 -16486949 + GC_rich Low_complexity Low_complexity 1 31 0 4 1384 216 191 0 0 chr12 104770603 104770650 -16486880 + C-rich Low_complexity Low_complexity 6 52 0 4 1384 21 89 0 0 chr12 104770753 104770809 -16486721 + GC_rich Low_complexity Low_complexity 1 56 0 4 1384 223 323 16 16 chr12 104773443 104773506 -16484024 - ID4 SINE ID -20 63 1 4 1384 240 186 27 67 chr12 104773621 104773696 -16483834 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 4 1384 492 229 85 0 chr12 104773704 104773822 -16483708 + B1F1 SINE Alu 5 132 -17 4 1384 28 29 0 0 chr12 104774534 104774569 -16482961 + AT_rich Low_complexity Low_complexity 1 35 0 4 1384 4836 43 2 0 chr12 104774574 104775138 -16482392 + L1Md_F2 LINE L1 6016 6580 -2 4 1384 462 221 364 0 chr12 104775325 104775479 -16482051 - B3 SINE B2 -6 210 1 4 1384 724 276 98 27 chr12 104776078 104776454 -16481076 - L1MB7 LINE L1 0 6184 5782 4 1384 990 254 44 40 chr12 104776456 104776821 -16480709 - Tigger7 DNA MER2_type -1885 606 313 4 1384 432 0 0 0 chr12 104776822 104776870 -16480660 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1384 367 304 32 8 chr12 104776919 104777045 -16480485 - Tigger7 DNA MER2_type -2362 129 1 4 1384 254 196 0 35 chr12 104777045 104777103 -16480427 - L1M4 LINE L1 -395 5783 5728 4 1384 768 324 83 36 chr12 104777557 104777795 -16479735 - L1ME3A LINE L1 -27 6146 5903 4 1384 849 66 0 0 chr12 104777795 104777916 -16479614 + (TC)n Simple_repeat Simple_repeat 2 122 0 4 1384 300 53 0 0 chr12 104777916 104777953 -16479577 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1384 588 325 83 36 chr12 104777953 104778316 -16479214 - L1ME3A LINE L1 -271 5902 5518 4 1384 24 32 0 0 chr12 104779299 104779330 -16478200 + AT_rich Low_complexity Low_complexity 1 31 0 4 1384 364 285 213 11 chr12 104780519 104780707 -16476823 - L1ME2 LINE L1 -8 6156 5931 4 1384 236 333 61 0 chr12 104780793 104780925 -16476605 - L1MA10 LINE L1 -9 6325 6186 4 1384 490 331 8 8 chr12 104781267 104781401 -16476129 + ID_B1 SINE B4 82 215 -9 4 1384 326 23 23 0 chr12 104781401 104781444 -16476086 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1384 576 210 10 0 chr12 104781490 104781590 -16475940 + B1_Mur3 SINE Alu 6 106 -43 4 1384 236 214 42 14 chr12 104781702 104781773 -16475757 - L1MD LINE L1 -885 5474 5402 4 1384 1189 55 0 0 chr12 104781931 104782077 -16475453 + B1_Mus1 SINE Alu 2 147 -1 4 1384 434 326 39 30 chr12 104782108 104782342 -16475188 - L1M4 LINE L1 -979 5167 4932 4 1384 974 232 95 20 chr12 104782575 104782922 -16474608 + Lx9 LINE L1 7271 7643 -1 4 1384 1245 176 9 0 chr12 104783234 104783444 -16474086 - B3 SINE B2 -3 213 2 4 1384 1445 157 0 41 chr12 104783547 104783813 -16473717 - MTC LTR MaLR -17 404 150 4 1384 1100 163 38 0 chr12 104783831 104784015 -16473515 - URR1B DNA MER1_type 0 225 35 4 1384 930 227 122 11 chr12 104784277 104784540 -16472990 - B4A SINE B4 0 292 1 4 1384 319 309 125 0 chr12 104784764 104785107 -16472423 - L1MC LINE L1 -2666 3480 3095 4 1384 280 221 0 14 chr12 104785259 104785328 -16472202 + L1MA9 LINE L1 6180 6247 -65 4 1384 372 77 0 0 chr12 104785338 104785390 -16472140 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1384 244 222 63 0 chr12 104785429 104785492 -16472038 + L1MA9 LINE L1 6244 6310 -2 4 1384 941 83 53 0 chr12 104786592 104786724 -16470806 + B1_Mus1 SINE Alu 1 139 -9 4 1384 237 33 0 0 chr12 104786724 104786754 -16470776 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1384 186 43 0 0 chr12 104786775 104786798 -16470732 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1384 500 292 44 0 chr12 104787244 104787357 -16470173 - RSINE1 SINE B4 0 165 48 5 1384 899 203 85 10 chr12 104787486 104787685 -16469845 + B3 SINE B2 2 215 -1 5 1384 401 307 83 8 chr12 104787892 104788017 -16469513 - L1MA4A LINE L1 -367 5936 5798 5 1384 270 0 0 0 chr12 104788017 104788047 -16469483 + (TATG)n Simple_repeat Simple_repeat 3 32 0 5 1384 401 307 83 8 chr12 104788047 104788161 -16469369 - L1MA4A LINE L1 -506 5797 5680 5 1384 270 0 0 0 chr12 104788540 104788570 -16468960 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1384 210 37 0 0 chr12 104789390 104789417 -16468113 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1384 335 206 123 0 chr12 104789974 104790047 -16467483 - ID2 SINE ID 0 83 2 5 1384 236 131 0 21 chr12 104790075 104790122 -16467408 + CT-rich Low_complexity Low_complexity 3 48 0 5 1384 297 275 118 39 chr12 104790187 104790350 -16467180 + MIRb SINE MIR 44 227 -41 5 1384 1432 63 16 16 chr12 104790506 104790698 -16466832 - B2_Mm2 SINE B2 -3 192 1 5 1384 369 268 0 0 chr12 104791232 104791303 -16466227 - ID4_ SINE ID -11 72 2 5 1384 201 179 26 0 chr12 104791397 104791436 -16466094 + CT-rich Low_complexity Low_complexity 1 40 0 5 1384 281 317 75 19 chr12 104791437 104791543 -16465987 - PB1D10 SINE Alu -1 116 5 5 1384 544 323 79 47 chr12 104791723 104792064 -16465466 - ORR1E LTR MaLR 0 359 8 5 1384 480 198 22 0 chr12 104793458 104793549 -16463981 - MTD LTR MaLR -326 93 1 5 1384 31 0 0 0 chr12 104793554 104793585 -16463945 + AT_rich Low_complexity Low_complexity 1 31 0 5 1384 192 222 56 0 chr12 104793587 104793641 -16463889 + MER5A DNA MER1_type 28 84 -105 5 1384 1736 165 68 96 chr12 104793750 104793993 -16463537 - ORR1C2 LTR MaLR 0 384 172 5 1384 288 0 0 0 chr12 104793993 104794025 -16463505 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1384 1736 165 68 96 chr12 104794025 104794176 -16463354 - ORR1C2 LTR MaLR -213 171 1 5 1384 1156 54 7 13 chr12 104794217 104794366 -16463164 + B1_Mus1 SINE Alu 1 148 0 5 1384 276 0 68 0 chr12 104794384 104794428 -16463102 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1384 23 0 0 0 chr12 104794528 104794551 -16462979 + AT_rich Low_complexity Low_complexity 1 23 0 5 1384 272 359 34 8 chr12 104794838 104794956 -16462574 - MLT1C LTR MaLR 0 467 347 5 1384 233 244 0 0 chr12 104795037 104795078 -16462452 - MLT1C LTR MaLR -355 150 110 5 1384 1384 190 78 0 chr12 104795470 104795787 -16461743 - ORR1D1 LTR MaLR -6 364 1 5 1384 25 0 0 0 chr12 104795809 104795834 -16461696 + AT_rich Low_complexity Low_complexity 1 25 0 5 1384 686 224 34 57 chr12 104797891 104798066 -16459464 - B3 SINE B2 -45 171 1 5 1384 844 144 58 0 chr12 104798350 104798489 -16459041 - B1_Mus2 SINE Alu 0 147 1 5 1384 846 238 14 29 chr12 104798617 104798825 -16458705 - ID_B1 SINE B4 -16 208 4 5 1384 199 306 78 58 chr12 104799418 104799609 -16457921 - L2a LINE L2 -18 3408 3214 5 1384 617 164 130 8 chr12 104800512 104800635 -16456895 - B1_Mur2 SINE Alu 0 149 12 5 1384 698 273 42 18 chr12 104800677 104800845 -16456685 + B3A SINE B2 4 175 -23 5 1384 210 37 0 0 chr12 104800877 104800904 -16456626 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1384 354 331 303 15 chr12 104801899 104802238 -16455292 + MLT1D LTR MaLR 51 487 -18 5 1384 193 333 59 47 chr12 104802294 104802379 -16455151 + L2a LINE L2 3316 3401 -25 5 1384 3820 97 9 9 chr12 104802480 104803032 -16454498 - RLTR13D1 LTR ERVK -28 778 227 5 1384 3039 144 35 2 chr12 104803013 104803529 -16454001 - RLTR13D1 LTR ERVK -369 533 1 5 1384 180 315 0 0 chr12 104803990 104804044 -16453486 - MIRb SINE MIR -22 246 193 5 1384 549 257 7 91 chr12 104804854 104805008 -16452522 - ID_B1 SINE B4 0 224 84 5 1384 299 276 69 54 chr12 104805558 104805688 -16451842 + L1MCc LINE L1 423 554 -5869 5 1384 1029 223 19 19 chr12 104806065 104806280 -16451250 - B3 SINE B2 0 216 2 5 1384 1755 224 55 8 chr12 104806435 104806818 -16450712 - MTD LTR MaLR -14 405 5 5 1384 295 300 9 35 chr12 104806978 104807092 -16450438 - RSINE1 SINE B4 -12 153 43 5 1384 2491 178 28 13 chr12 104808084 104808556 -16448974 + RMER20A LTR ERVK 2 480 -36 5 1384 276 176 174 12 chr12 104809618 104809704 -16447826 - ID_B1 SINE B4 0 224 125 5 1384 297 125 0 0 chr12 104809837 104809893 -16447637 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1384 30 0 0 0 chr12 104811839 104811869 -16445661 + AT_rich Low_complexity Low_complexity 1 30 0 5 1384 812 36 0 0 chr12 104811869 104811980 -16445550 - L1Md_T LINE L1 -1 6581 6471 5 1384 248 356 17 17 chr12 104812301 104812418 -16445112 - L2a LINE L2 -250 3176 3060 5 1384 459 307 186 27 chr12 104812420 104812792 -16444738 - L2a LINE L2 -514 2905 2475 5 1384 1085 147 47 16 chr12 104812792 104812985 -16444545 - URR1B DNA MER1_type 0 225 27 5 1384 755 164 31 15 chr12 104813671 104813801 -16443729 - B1_Mur1 SINE Alu -6 143 12 5 1384 787 232 81 53 chr12 104813879 104814088 -16443442 - B3A SINE B2 0 216 2 5 1384 246 267 0 0 chr12 104815187 104815262 -16442268 - L1ME4a LINE L1 -3 6121 6047 5 1384 22 56 0 0 chr12 104815495 104815531 -16441999 + AT_rich Low_complexity Low_complexity 1 36 0 5 1384 509 257 138 11 chr12 104815628 104815809 -16441721 + ID_B1 SINE B4 5 208 -16 5 1384 21 0 0 0 chr12 104816093 104816114 -16441416 + AT_rich Low_complexity Low_complexity 1 21 0 5 1384 359 211 11 0 chr12 104817801 104817891 -16439639 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 1384 2842 230 135 5 chr12 104818010 104818869 -16438661 - Lx8 LINE L1 -158 7315 6345 5 1384 237 300 11 43 chr12 104818881 104818975 -16438555 - Lx8 LINE L1 -1205 6268 6178 5 1384 1682 154 45 22 chr12 104819024 104819336 -16438194 - ORR1C1 LTR MaLR -6 372 54 5 1384 252 0 0 0 chr12 104819541 104819569 -16437961 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 5 1384 374 215 0 60 chr12 104821214 104821298 -16436232 - B1F2 SINE Alu -6 143 65 5 1384 185 108 27 0 chr12 104821321 104821358 -16436172 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 5 1384 624 196 9 0 chr12 104821364 104821476 -16436054 - B1_Mur1 SINE Alu -1 148 36 5 1384 30 27 0 0 chr12 104821875 104821912 -16435618 + AT_rich Low_complexity Low_complexity 1 37 0 5 1384 41 21 0 0 chr12 104824766 104824814 -16432716 + AT_rich Low_complexity Low_complexity 1 48 0 5 1384 409 237 0 25 chr12 104824819 104824940 -16432590 - Lx6 LINE L1 -26 7434 7317 5 1384 948 259 123 28 chr12 104826330 104827051 -16430479 - MTEa LTR MaLR -2 419 1 5 1384 657 264 115 37 chr12 104827322 104827566 -16429964 + B4A SINE B4 1 263 -29 5 1384 300 172 0 0 chr12 104827985 104828043 -16429487 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1384 518 304 20 20 chr12 104830018 104830169 -16427361 + B3A SINE B2 1 151 -47 5 1384 486 0 0 0 chr12 104830223 104830277 -16427253 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1384 351 0 0 0 chr12 104830278 104830317 -16427213 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1384 231 298 10 78 chr12 104831416 104831518 -16426012 - MLT1D LTR MaLR -363 142 48 5 1384 815 288 24 0 chr12 104831611 104831823 -16425707 - ID_B1 SINE B4 -6 218 2 5 1384 3316 28 3 0 chr12 104832312 104832702 -16424828 - L1Md_T LINE L1 -1 6581 6191 5 1384 492 18 0 0 chr12 104833114 104833171 -16424359 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 5 1384 1183 62 7 0 chr12 104834183 104834328 -16423202 + B1_Mus2 SINE Alu 2 147 0 5 1384 416 257 107 0 chr12 104836535 104836675 -16420855 - L1MA5 LINE L1 -446 5854 5700 5 1384 422 344 109 40 chr12 104837378 104838083 -16419447 + L2a LINE L2 2158 2911 -508 5 1384 246 302 81 0 chr12 104838184 104838270 -16419260 + L2a LINE L2 3069 3161 -265 5 1384 361 216 216 0 chr12 104840211 104840322 -16417208 - B3A SINE B2 -63 135 1 5 1384 308 297 44 18 chr12 104840322 104840428 -16417102 - RMER5 LTR ERV1 -313 221 113 5 1384 243 88 0 0 chr12 104840879 104840913 -16416617 + (TTA)n Simple_repeat Simple_repeat 2 35 0 5 1384 1074 50 43 7 chr12 104840914 104841055 -16416475 - B1_Mus1 SINE Alu -2 146 1 5 1384 242 106 0 21 chr12 104841941 104841989 -16415541 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 1384 826 166 79 0 chr12 104842301 104842440 -16415090 - B1_Mur4 SINE Alu 0 150 1 5 1384 832 236 101 132 chr12 104843847 104844186 -16413344 + Lx8 LINE L1 7098 7445 -28 5 1384 814 145 35 0 chr12 104844186 104844331 -16413199 + B1_Mur4 SINE Alu 1 150 0 5 1384 832 236 101 132 chr12 104844331 104844377 -16413153 + Lx8 LINE L1 7446 7471 -2 5 1384 425 264 139 20 chr12 104844615 104844766 -16412764 - Lx8 LINE L1 -207 7266 7098 5 1384 294 180 0 0 chr12 104844952 104845013 -16412517 + GA-rich Low_complexity Low_complexity 3 63 0 5 1384 322 250 119 0 chr12 104846125 104846209 -16411321 - MER58B DNA MER1_type -28 313 220 5 1384 247 289 75 63 chr12 104846674 104846833 -16410697 + L1MD LINE L1 4903 5063 -1083 5 1384 268 239 124 0 chr12 104847044 104847157 -16410373 + L1ME1 LINE L1 5315 5441 -738 5 1384 305 302 63 0 chr12 104847159 104847270 -16410260 + PB1D10 SINE Alu 1 127 0 5 1384 833 48 31 86 chr12 104847301 104847995 -16409535 + (CAGAG)n Simple_repeat Simple_repeat 1 655 0 5 1384 607 305 160 26 chr12 104848121 104848659 -16408871 + L1ME1 LINE L1 5570 6179 0 5 1384 631 137 216 0 chr12 104849093 104849246 -16408284 + B2_Mm2 SINE B2 10 195 0 5 1384 192 120 39 20 chr12 104849601 104849652 -16407878 + CT-rich Low_complexity Low_complexity 4 55 0 5 1384 223 250 45 30 chr12 104849654 104849720 -16407810 - PB1D10 SINE Alu -8 109 43 5 1384 220 196 0 56 chr12 104850955 104851009 -16406521 + CT-rich Low_complexity Low_complexity 3 53 0 5 1384 507 161 65 108 chr12 104852995 104853134 -16404396 + B2_Mm2 SINE B2 51 183 -12 5 1384 225 0 0 0 chr12 104854282 104854307 -16403223 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1384 649 199 14 51 chr12 104854308 104854446 -16403084 + B1_Mur1 SINE Alu 1 133 -16 5 1384 1012 109 11 0 chr12 104854476 104854651 -16402879 + (GA)n Simple_repeat Simple_repeat 1 177 0 5 21 38517 15 1 7 chr12 104855695 104860852 -16396678 + L1Md_T LINE L1 468 5586 -297 6 1385 8453 38 2 0 chr12 104860852 104861846 -16395684 + L1Md_T LINE L1 5587 6582 0 6 1385 276 311 134 36 chr12 104864019 104864460 -16393070 + L2 LINE L2 2576 3059 -360 6 1385 652 246 79 32 chr12 104865884 104866073 -16391457 + B3A SINE B2 1 198 0 6 1385 196 323 62 0 chr12 104866089 104866185 -16391345 - MIRb SINE MIR -163 105 4 6 1385 261 146 0 0 chr12 104866959 104867007 -16390523 + (TCC)n Simple_repeat Simple_repeat 1 48 0 6 1385 629 262 108 34 chr12 104868570 104868839 -16388691 + MLT1A LTR MaLR 25 313 -61 6 1385 372 169 0 0 chr12 104870199 104870276 -16387254 + (CAA)n Simple_repeat Simple_repeat 2 78 0 6 1385 1003 186 93 0 chr12 104870285 104870489 -16387041 + ID_B1 SINE B4 2 224 0 6 1385 3239 55 5 2 chr12 104870922 104871324 -16386206 - MTB_Mm LTR MaLR 0 407 5 6 1385 272 281 24 0 chr12 104872474 104872556 -16384974 + C-rich Low_complexity Low_complexity 4 87 0 6 1385 296 233 76 17 chr12 104872544 104872662 -16384868 + (TCTCTG)n Simple_repeat Simple_repeat 2 126 0 6 1385 311 235 0 0 chr12 104872662 104872730 -16384800 - ID4_ SINE ID -11 72 5 6 1385 186 43 0 0 chr12 104873447 104873470 -16384060 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1385 510 31 0 0 chr12 104873598 104873662 -16383868 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1385 863 210 33 25 chr12 104873675 104873865 -16383665 + B3 SINE B2 35 210 -6 6 1385 359 268 32 84 chr12 104874069 104874311 -16383219 + MLT1C LTR MaLR 171 466 -1 6 1385 54 0 0 0 chr12 104874555 104874609 -16382921 + AT_rich Low_complexity Low_complexity 1 54 0 6 1385 23 33 0 0 chr12 104874621 104874651 -16382879 + AT_rich Low_complexity Low_complexity 1 30 0 6 1385 542 300 108 70 chr12 104874668 104875009 -16382521 - ORR1E LTR MaLR -2 357 4 6 1385 1113 246 286 23 chr12 104875019 104875576 -16381954 - MTEa-int LTR MaLR -73 1507 803 6 1385 197 22 20 82 chr12 104875662 104875711 -16381819 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 6 1385 567 43 0 0 chr12 104875766 104875836 -16381694 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 6 1385 1240 71 33 0 chr12 104875836 104876018 -16381512 - B2_Mm2 SINE B2 -2 193 6 6 1385 1262 274 159 25 chr12 104876055 104876548 -16380982 - MTEa-int LTR MaLR -896 684 119 6 1385 3444 30 5 0 chr12 104876548 104876942 -16380588 - MTA_Mm LTR MaLR 0 396 1 6 1385 1262 274 159 25 chr12 104876942 104877051 -16380479 - MTEa-int LTR MaLR -1462 118 1 6 1385 328 291 72 9 chr12 104877051 104877162 -16380368 - MTEa LTR MaLR 0 379 262 6 1385 264 59 0 0 chr12 104877901 104877935 -16379595 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 6 1385 4391 133 35 154 chr12 104877937 104879011 -16378519 + RMER21A LTR ERV1 1 947 0 6 1385 2225 194 113 29 chr12 104879106 104879617 -16377913 - Lx4B LINE L1 -4 7054 6501 6 1385 468 0 0 0 chr12 104880152 104880204 -16377326 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1385 360 0 0 0 chr12 104881187 104881227 -16376303 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1385 208 287 46 0 chr12 104881558 104881666 -16375864 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 6 1385 500 302 28 23 chr12 104881705 104881881 -16375649 - LTR41 LTR ERVL -589 179 3 6 1385 23 33 0 0 chr12 104882009 104882039 -16375491 + AT_rich Low_complexity Low_complexity 1 30 0 6 1385 729 232 93 0 chr12 104882079 104882273 -16375257 - B3 SINE B2 -4 212 1 6 1385 233 297 120 29 chr12 104882785 104882993 -16374537 - L1MEc LINE L1 -4847 1553 1327 6 1385 198 0 0 0 chr12 104883362 104883384 -16374146 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1385 396 0 0 0 chr12 104884203 104884247 -16373283 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1385 542 221 42 78 chr12 104884647 104884814 -16372716 + MLT1A0 LTR MaLR 78 238 -127 6 1385 2625 282 117 28 chr12 104887120 104888196 -16369334 + MTEa-int LTR MaLR 407 1578 -2 6 1385 686 199 140 18 chr12 104888198 104888362 -16369168 + MTEa LTR MaLR 1 184 -195 6 1385 1239 320 52 70 chr12 104888515 104889114 -16368416 + MTE-int LTR MaLR 2 589 -991 6 1385 300 344 101 8 chr12 104889114 104889243 -16368287 + B1F SINE Alu 3 143 -6 6 1385 447 202 16 11 chr12 104891155 104891351 -16366179 + (TG)n Simple_repeat Simple_repeat 1 197 0 6 1385 199 233 10 10 chr12 104891485 104891589 -16365941 + (TG)n Simple_repeat Simple_repeat 1 104 0 6 1385 333 211 111 111 chr12 104891602 104891746 -16365784 - MER20 DNA MER1_type -71 148 5 6 1385 184 351 61 9 chr12 104892764 104892879 -16364651 + MIR SINE MIR 21 141 -67 6 1385 381 343 77 29 chr12 104893455 104893701 -16363829 + Lx8 LINE L1 7216 7473 0 6 1385 263 71 24 0 chr12 104894003 104894045 -16363485 + (CAGGG)n Simple_repeat Simple_repeat 2 44 0 6 1385 317 256 12 25 chr12 104895823 104895903 -16361627 - ID4 SINE ID -1 82 4 6 1385 267 103 0 0 chr12 104896263 104896302 -16361228 + (TATG)n Simple_repeat Simple_repeat 1 39 0 6 1385 303 180 32 32 chr12 104896729 104896792 -16360738 - MurSatRep1 Unknown Unknown -1851 286 224 6 1385 826 364 9 26 chr12 104896808 104897149 -16360381 - MTE-int LTR MaLR -401 1179 845 6 1385 297 250 36 130 chr12 104897186 104897324 -16360206 + RMER15 LTR ERVL 63 187 -388 6 1385 237 261 10 80 chr12 104897359 104897459 -16360071 + RMER15 LTR ERVL 425 517 -58 6 1385 196 241 52 0 chr12 104898442 104898500 -16359030 - MIR SINE MIR -201 61 1 6 1385 197 394 11 0 chr12 104898758 104898852 -16358678 + MIR SINE MIR 41 135 -73 6 1385 564 150 400 0 chr12 104898950 104899110 -16358420 - URR1B DNA MER1_type 0 225 2 6 1385 309 51 0 0 chr12 104899459 104899498 -16358032 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1385 502 250 0 10 chr12 104899622 104899719 -16357811 + PB1D9 SINE Alu 5 100 -20 6 1385 207 100 0 0 chr12 104899727 104899757 -16357773 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 6 1385 675 112 0 0 chr12 104899764 104899889 -16357641 + (GA)n Simple_repeat Simple_repeat 2 126 0 6 1385 330 305 79 22 chr12 104899984 104900162 -16357368 + MER117 DNA MER1_type 7 194 -3 6 1385 187 280 131 65 chr12 104900550 104900703 -16356827 - MIR SINE MIR -54 208 46 6 1385 444 302 113 41 chr12 104901112 104901430 -16356100 - L1MC3 LINE L1 -910 6875 6535 6 1385 318 80 0 0 chr12 104901467 104901517 -16356013 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1385 467 229 68 83 chr12 104901534 104901667 -16355863 - RSINE1 SINE B4 -17 148 18 6 1385 564 245 101 69 chr12 104901869 104902194 -16355336 - L1MC3 LINE L1 -1513 6272 5936 6 1385 370 352 0 8 chr12 104902360 104902483 -16355047 + GA-rich Low_complexity Low_complexity 1 122 0 6 1385 198 0 0 0 chr12 104902787 104902809 -16354721 + (TGG)n Simple_repeat Simple_repeat 2 23 0 6 1385 375 23 0 0 chr12 104902818 104902862 -16354668 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1385 258 302 78 18 chr12 104902955 104903174 -16354356 - L1MC3 LINE L1 -934 5212 4981 6 1385 310 308 9 9 chr12 104903203 104903308 -16354222 + CT-rich Low_complexity Low_complexity 4 108 0 6 1385 1594 239 55 0 chr12 104903356 104903737 -16353793 + MTD LTR MaLR 18 419 0 6 1385 2794 233 120 95 chr12 104903737 104904769 -16352761 + MTD-int LTR MaLR 1 1016 -242 6 1385 225 0 0 0 chr12 104904769 104904794 -16352736 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 6 1385 2794 233 120 95 chr12 104904794 104904961 -16352569 + MTD-int LTR MaLR 1017 1230 -28 6 1385 599 241 139 33 chr12 104905004 104905184 -16352346 + MTD LTR MaLR 26 224 -195 6 1385 252 0 0 0 chr12 104905193 104905221 -16352309 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1385 260 333 58 0 chr12 104905236 104905305 -16352225 + MER81 DNA AcHobo 41 113 -1 6 1385 541 40 26 0 chr12 104905375 104905451 -16352079 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 6 1385 215 269 30 0 chr12 104906168 104906235 -16351295 - L2 LINE L2 -2371 1048 980 6 1385 468 312 102 70 chr12 104908859 104909231 -16348299 + RLTR18 LTR ERVK 145 528 -88 6 1385 1206 170 68 0 chr12 104909559 104909765 -16347765 + URR1B DNA MER1_type 1 220 -5 6 1385 387 293 57 42 chr12 104909602 104909794 -16347736 - CYRA11_Mm Unknown Y-chromosome -272 345 151 6 1385 335 213 117 87 chr12 104910029 104910132 -16347398 - B4 SINE B4 -3 289 184 6 1385 297 216 42 74 chr12 104910160 104910255 -16347275 + MTD LTR MaLR 3 94 -325 6 1385 459 262 0 19 chr12 104910255 104910360 -16347170 - B4 SINE B4 -189 103 1 6 1385 1338 147 0 59 chr12 104912607 104912846 -16344684 - URR1B DNA MER1_type 0 225 1 6 1385 226 241 115 13 chr12 104914567 104914646 -16342884 - MIRc SINE MIR -142 126 36 6 1385 252 100 0 0 chr12 104915257 104915297 -16342233 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 6 1385 999 316 7 31 chr12 104917248 104917539 -16339991 + B4A SINE B4 1 284 -8 6 1385 480 111 0 0 chr12 104917564 104917636 -16339894 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1385 297 0 0 0 chr12 104917636 104917668 -16339862 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1385 356 279 91 17 chr12 104917779 104917954 -16339576 + MER117 DNA MER1_type 7 194 -3 6 1385 479 291 105 61 chr12 104918834 104919229 -16338301 - MLT1B LTR MaLR -2 388 29 6 1385 244 244 129 35 chr12 104919328 104919413 -16338117 + MER91C DNA Tip100 46 138 -2 6 1385 226 258 15 0 chr12 104919906 104919972 -16337558 + ID4 SINE ID 2 68 -15 6 1385 23 0 0 0 chr12 104920542 104920565 -16336965 + AT_rich Low_complexity Low_complexity 1 23 0 6 1385 387 0 0 0 chr12 104920567 104920610 -16336920 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1385 685 74 0 0 chr12 104920620 104920715 -16336815 - B1_Mm SINE Alu -19 128 34 6 1385 248 88 0 0 chr12 104920824 104920858 -16336672 - MER103 DNA DNA -76 90 57 6 1385 250 354 113 69 chr12 104921397 104921752 -16335778 + L2b LINE L2 3052 3425 -1 6 1385 470 294 80 69 chr12 104921892 104922181 -16335349 - B4 SINE B4 0 292 1 6 1385 428 389 66 14 chr12 104922327 104922614 -16334916 - L1M5 LINE L1 -471 5653 5352 6 1385 423 0 0 0 chr12 104925143 104925190 -16332340 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1385 816 39 0 0 chr12 104925743 104925847 -16331683 + (TG)n Simple_repeat Simple_repeat 1 104 0 6 1385 228 256 136 32 chr12 104925933 104926058 -16331472 - MIRc SINE MIR -101 167 30 6 1385 191 303 19 39 chr12 104928891 104928994 -16328536 + L2 LINE L2 413 513 -2906 6 1385 47 19 0 0 chr12 104930456 104930510 -16327020 + AT_rich Low_complexity Low_complexity 1 54 0 6 1385 209 375 71 9 chr12 104931158 104931271 -16326259 - MIRm SINE MIR -152 124 5 7 1385 272 232 83 53 chr12 104932470 104932620 -16324910 - MIRm SINE MIR -90 186 31 7 1385 323 246 33 25 chr12 104934876 104934997 -16322533 + MYSERV-int LTR ERVK 5339 5460 -1090 7 1385 258 294 29 0 chr12 104935413 104935481 -16322049 + RLTR42-int LTR ERVK 1785 1854 -3668 7 1385 511 292 124 43 chr12 104935826 104936012 -16321518 - ID_B1 SINE B4 -14 210 10 7 1385 2145 119 12 22 chr12 104936013 104936353 -16321177 - Lx4A LINE L1 -29 7029 6715 7 1385 1557 141 26 8 chr12 104936573 104936838 -16320692 + ORR1C2 LTR MaLR 115 384 0 7 1385 915 243 125 57 chr12 104936878 104937262 -16320268 + RMER15-int LTR ERVL 4590 4999 0 7 1385 370 295 39 148 chr12 104937365 104937648 -16319882 + RMER15 LTR ERVL 280 531 -44 7 1385 843 173 0 0 chr12 104937947 104938115 -16319415 + GA-rich Low_complexity Low_complexity 2 169 0 7 1385 390 306 69 107 chr12 104939754 104940043 -16317487 + MER65D LTR ERV1 77 354 -119 7 1385 405 0 0 0 chr12 104943058 104943103 -16314427 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1385 360 292 34 50 chr12 104943115 104943234 -16314296 - RSINE1 SINE B4 -33 132 16 7 1385 306 301 62 25 chr12 104945704 104945864 -16311666 + MLT1D LTR MaLR 65 230 -275 7 1385 189 0 0 0 chr12 104946360 104946381 -16311149 + (ACTG)n Simple_repeat Simple_repeat 4 24 0 7 1385 855 331 82 48 chr12 104947005 104947687 -16309843 + MTE-int LTR MaLR 840 1544 -36 7 1385 281 309 124 36 chr12 104948119 104948344 -16309186 - MER57C2 LTR ERV1 -25 409 165 7 1385 262 107 0 96 chr12 104948626 104948709 -16308821 + GA-rich Low_complexity Low_complexity 4 78 0 7 1385 1338 208 71 85 chr12 104949110 104949488 -16308042 - MTE2a LTR MaLR -6 373 1 7 1385 578 308 76 74 chr12 104949507 104949900 -16307630 - MER57A-int LTR ERV1 -1426 4761 4368 7 1385 322 84 42 78 chr12 104950108 104950250 -16307280 + A-rich Low_complexity Low_complexity 3 139 0 7 1385 495 321 61 127 chr12 104950282 104950654 -16306876 + L1M2c LINE L1 1459 1796 -5053 7 1385 357 118 0 14 chr12 104950654 104950723 -16306807 - L1Md_F2 LINE L1 0 6582 6515 7 1385 495 311 95 88 chr12 104950723 104951494 -16306036 + L1M2c LINE L1 1797 2550 -4299 7 1385 244 270 126 90 chr12 104951955 104952122 -16305408 + RMER5 LTR ERV1 40 212 -322 7 1385 854 53 9 0 chr12 104952124 104952237 -16305293 + RLTR28B LTR ERVL 93 206 -275 7 1385 461 101 22 0 chr12 104952273 104952362 -16305168 + (TCTCTG)n Simple_repeat Simple_repeat 4 94 0 7 1385 477 0 0 0 chr12 104952362 104952415 -16305115 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1385 442 242 96 8 chr12 104952417 104952542 -16304988 + RMER5 LTR ERV1 395 530 -4 7 1385 180 0 0 0 chr12 104953800 104953820 -16303710 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 7 1385 423 0 0 0 chr12 104955148 104955195 -16302335 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1385 198 367 12 12 chr12 104956182 104956262 -16301268 - MIR3 SINE MIR -122 86 7 7 1385 292 242 48 0 chr12 104957734 104957796 -16299734 + PB1D10 SINE Alu 52 116 -1 7 1385 203 61 0 29 chr12 104957799 104957833 -16299697 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1385 2240 70 27 3 chr12 104958577 104958878 -16298652 - IAPLTR2b LTR ERVK -19 308 1 7 1385 7432 230 21 32 chr12 104958878 104960630 -16296900 - IAPLTR3-int LTR ERVK -20 6801 5069 7 1385 496 247 37 1 chr12 104961500 104961637 -16295893 - MTE2b LTR MaLR -235 144 1 7 1385 1982 78 0 0 chr12 104961651 104961907 -16295623 - L1_Mm LINE L1 -354 5529 5274 7 1385 1323 83 0 0 chr12 104961906 104962074 -16295456 + L1_Mm LINE L1 5554 5721 -162 7 1385 2757 83 6 0 chr12 104962074 104962437 -16295093 + L1Md_F2 LINE L1 6213 6577 -5 7 1385 376 299 57 0 chr12 104962437 104962462 -16295068 + L1MC LINE L1 5752 5780 -2102 7 1385 4065 184 47 18 chr12 104962806 104963630 -16293900 + RLTR13A LTR ERVK 1 848 -7 7 1385 259 297 90 45 chr12 104964231 104964365 -16293165 + MIRc SINE MIR 28 167 -95 7 1385 508 245 225 28 chr12 104965589 104965807 -16291723 + RMER15 LTR ERVL 301 561 -14 7 1385 573 28 0 0 chr12 104966283 104966354 -16291176 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1385 193 315 166 16 chr12 104969610 104969797 -16287733 - MIRb SINE MIR -16 252 38 7 1385 227 303 86 50 chr12 104969885 104970024 -16287506 - MER103 DNA DNA -16 150 7 7 1385 733 332 21 59 chr12 104970970 104971258 -16286272 + B4A SINE B4 9 285 -7 7 1385 731 229 143 5 chr12 104971815 104972004 -16285526 + B3 SINE B2 2 216 0 7 1385 558 29 0 0 chr12 104972010 104972078 -16285452 + (GGA)n Simple_repeat Simple_repeat 2 69 0 7 1385 293 305 90 10 chr12 104972313 104972456 -16285074 + MIRb SINE MIR 45 196 -12 7 1385 583 284 114 5 chr12 104972813 104973015 -16284515 - ID_B1 SINE B4 0 224 1 7 1385 507 309 24 32 chr12 104973423 104973611 -16283919 - B4A SINE B4 -108 184 2 7 1385 815 295 73 32 chr12 104973887 104974230 -16283300 - MTEa LTR MaLR -22 357 1 7 1385 356 383 8 0 chr12 104974931 104975078 -16282452 - MIR SINE MIR -114 154 6 7 1385 299 271 198 31 chr12 104975465 104975698 -16281832 + MIR SINE MIR 1 256 -6 7 1385 801 19 28 0 chr12 104975707 104975814 -16281716 + (TC)n Simple_repeat Simple_repeat 1 110 0 7 1385 414 0 0 0 chr12 104975814 104975859 -16281671 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1385 200 160 17 0 chr12 104978117 104978163 -16279367 + MIRc SINE MIR 114 165 -111 7 1385 346 301 161 30 chr12 104978587 104978885 -16278645 + L1M2 LINE L1 2214 2550 -4299 7 1385 243 270 98 78 chr12 104979298 104979491 -16278039 + RMER5 LTR ERV1 1 197 -337 7 1385 913 44 0 0 chr12 104979517 104979631 -16277899 + RLTR28B LTR ERVL 93 206 -275 7 1385 496 228 176 18 chr12 104979633 104979669 -16277861 + RMER5 LTR ERV1 340 385 -149 7 1385 375 23 0 0 chr12 104979669 104979713 -16277817 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1385 243 0 0 0 chr12 104979713 104979739 -16277791 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1385 496 228 176 18 chr12 104979739 104979866 -16277664 + RMER5 LTR ERV1 386 529 -5 7 1385 464 257 47 95 chr12 104980052 104980284 -16277246 + L1M2 LINE L1 4425 4645 -2197 7 1385 1182 171 74 19 chr12 104980285 104980529 -16277001 - ORR1C2 LTR MaLR 0 421 156 7 1385 194 33 67 0 chr12 104980908 104980938 -16276592 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1385 186 224 0 0 chr12 104981088 104981137 -16276393 + GA-rich Low_complexity Low_complexity 3 51 0 7 1385 365 200 172 9 chr12 104981227 104981343 -16276187 - RMER1A Other Other -1 1029 895 7 1385 1890 198 118 36 chr12 104981320 104981735 -16275795 - RMER1B Other Other -133 933 485 7 1385 235 232 80 68 chr12 104982780 104982868 -16274662 + RLTR13C2 LTR ERVK 214 302 -506 7 1385 182 115 0 0 chr12 104983358 104983384 -16274146 + L3 LINE CR1 4201 4226 -263 7 1385 204 195 0 47 chr12 104983821 104983864 -16273666 + MIRc SINE MIR 113 153 -115 7 1385 189 0 0 0 chr12 104983981 104984002 -16273528 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 1385 227 0 93 0 chr12 104984002 104984044 -16273486 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1385 474 222 8 0 chr12 104986269 104986406 -16271124 - B1F SINE Alu -6 143 34 7 1385 372 362 7 26 chr12 104986562 104986715 -16270815 - B3A SINE B2 -16 182 33 7 1385 532 260 90 51 chr12 104986715 104986893 -16270637 - B4A SINE B4 -94 198 14 7 1385 729 63 0 0 chr12 104987066 104987161 -16270369 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 7 1385 269 62 78 0 chr12 104988070 104988134 -16269396 + (CAAA)n Simple_repeat Simple_repeat 2 70 0 7 1385 264 254 51 0 chr12 104988359 104988418 -16269112 + PB1D10 SINE Alu 55 116 -1 7 1385 189 74 0 0 chr12 104988421 104988448 -16269082 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1386 2150 110 25 9 chr12 104989176 104989496 -16268034 - IAPLTR2b LTR ERVK -2 325 1 7 1386 7170 80 11 15 chr12 104989496 104990452 -16267078 - IAPEz-int LTR ERVK 0 6481 5529 7 1386 269 100 25 0 chr12 104990544 104990584 -16266946 - IAPEz-int LTR ERVK -957 5524 5484 7 1386 4190 121 0 32 chr12 104990584 104991247 -16266283 + L1Md_Gf LINE L1 246 887 -5635 7 1386 3529 134 43 53 chr12 104991264 104991937 -16265593 - IAPEz-int LTR ERVK -5685 796 11 7 1386 2163 86 40 28 chr12 104991949 104992272 -16265258 - IAPLTR2b LTR ERVK 0 327 1 7 1386 476 182 86 23 chr12 104993415 104993589 -16263941 + RMER17C LTR ERVK 90 274 -136 7 1386 309 228 25 25 chr12 104993671 104993752 -16263778 - MIRb SINE MIR -95 173 93 7 1386 1310 212 48 26 chr12 104993753 104994063 -16263467 - MTE2b LTR MaLR 0 379 63 7 1386 400 287 100 31 chr12 104994041 104994229 -16263301 - MTE2b LTR MaLR -224 195 3 7 1386 416 139 0 12 chr12 104994463 104994543 -16262987 + CT-rich Low_complexity Low_complexity 3 81 0 7 1386 273 333 55 16 chr12 104994636 104994764 -16262766 - MIR SINE MIR -60 148 16 7 1386 474 246 33 0 chr12 104996605 104996727 -16260803 - MTE2b LTR MaLR -235 144 19 7 1386 1929 94 0 0 chr12 104996756 104997012 -16260518 - L1_Mm LINE L1 -354 5529 5274 7 1386 1512 76 0 5 chr12 104997011 104997210 -16260320 + L1_Mm LINE L1 5554 5751 -132 7 1386 4286 65 2 2 chr12 104997198 104997751 -16259779 + L1_Mm LINE L1 4412 4964 -919 7 1386 614 69 10 29 chr12 104997751 104997855 -16259675 + L1Md_F2 LINE L1 6481 6582 0 7 1386 4191 166 53 55 chr12 104998164 104999103 -16258427 + RLTR13A3 LTR ERVK 35 971 -7 7 1386 258 302 76 45 chr12 104999692 104999824 -16257706 + MIRc SINE MIR 28 163 -99 7 1386 509 244 238 26 chr12 105001029 105001256 -16256274 + RMER15 LTR ERVL 301 575 0 1 1386 465 34 0 0 chr12 105001720 105001779 -16255751 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1386 189 161 0 0 chr12 105003255 105003286 -16254244 + L2b LINE L2 3122 3152 -223 3 1386 770 328 21 59 chr12 105006426 105006714 -16250816 + B4A SINE B4 9 285 -7 4 1386 697 225 148 11 chr12 105007250 105007439 -16250091 + B3 SINE B2 2 216 0 5 1386 510 17 0 0 chr12 105007445 105007504 -16250026 + (GGA)n Simple_repeat Simple_repeat 2 60 0 6 1386 294 288 95 15 chr12 105007738 105007881 -16249649 + MIR SINE MIR 43 196 -12 7 1386 671 269 114 5 chr12 105008238 105008440 -16249090 - ID_B1 SINE B4 0 224 1 8 1386 515 304 24 32 chr12 105008847 105009035 -16248495 - B4A SINE B4 -108 184 2 9 1386 841 297 70 29 chr12 105009310 105009653 -16247877 - MTEa LTR MaLR -22 357 1 1 1386 220 292 15 0 chr12 105010040 105010105 -16247425 + MIRb SINE MIR 63 128 -140 1 1386 367 377 8 0 chr12 105010353 105010483 -16247047 - MIR SINE MIR -112 150 20 1 1386 290 264 219 8 chr12 105010917 105011103 -16246427 + MIR SINE MIR 18 246 -22 1 1386 649 34 23 0 chr12 105011130 105011218 -16246312 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1386 621 40 0 0 chr12 105011218 105011293 -16246237 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1386 191 244 0 24 chr12 105012418 105012460 -16245070 + MIRc SINE MIR 83 123 -145 1 1386 183 121 30 0 chr12 105013547 105013580 -16243950 + MIRc SINE MIR 114 147 -121 1 1386 305 287 134 30 chr12 105014008 105014313 -16243217 + L1M2c LINE L1 2211 2550 -4299 1 1386 37170 41 11 11 chr12 105014353 105016002 -16241528 - L1Md_T LINE L1 0 6582 4915 1 1386 226 229 31 62 chr12 105016002 105016067 -16241463 + RMER20A LTR ERVK 186 248 -268 2 1386 37170 41 11 11 chr12 105016067 105019733 -16237797 - L1Md_T LINE L1 0 4914 1203 1 1386 8543 81 4 15 chr12 105019699 105020983 -16236547 - L1Md_Gf LINE L1 -5380 1142 1 2 1386 501 279 164 104 chr12 105021372 105021591 -16235939 + RMER5 LTR ERV1 1 326 -208 2 1386 913 44 0 0 chr12 105021591 105021705 -16235825 + RLTR28B LTR ERVL 93 206 -275 2 1386 501 279 164 104 chr12 105021705 105021743 -16235787 + RMER5 LTR ERV1 327 385 -149 2 1386 486 0 0 0 chr12 105021743 105021797 -16235733 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1386 261 0 0 0 chr12 105021797 105021825 -16235705 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1386 501 279 164 104 chr12 105021825 105021952 -16235578 + RMER5 LTR ERV1 386 529 -5 2 1386 251 316 104 13 chr12 105021960 105022114 -16235416 + LTR52 LTR ERVL 161 328 -93 2 1386 471 280 30 74 chr12 105022136 105022367 -16235163 + L1MC LINE L1 3729 3949 -2197 2 1386 1168 173 76 21 chr12 105022368 105022612 -16234918 - ORR1C2 LTR MaLR 0 421 156 2 1386 194 33 67 0 chr12 105022995 105023025 -16234505 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1386 219 204 0 0 chr12 105023168 105023217 -16234313 + GA-rich Low_complexity Low_complexity 3 51 0 3 1386 326 200 171 17 chr12 105023307 105023424 -16234106 - RMER1A Other Other -1 1029 895 3 1386 1767 201 119 50 chr12 105023401 105023821 -16233709 - RMER1B Other Other -133 933 485 3 1386 239 257 85 76 chr12 105024834 105024952 -16232578 + RLTR13C2 LTR ERVK 184 302 -506 3 1386 182 115 0 0 chr12 105025426 105025452 -16232078 + L3 LINE CR1 4201 4226 -263 3 1386 477 0 0 0 chr12 105026056 105026109 -16231421 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1386 219 342 12 12 chr12 105027148 105027228 -16230302 - MIR3 SINE MIR -122 86 7 3 1386 506 207 8 0 chr12 105028381 105028518 -16229012 - B1F SINE Alu -6 143 34 3 1386 408 344 11 67 chr12 105028647 105028828 -16228702 - B3A SINE B2 -12 204 33 3 1386 620 243 90 51 chr12 105028828 105029006 -16228524 - B4A SINE B4 -94 198 14 3 1386 761 82 9 0 chr12 105029179 105029289 -16228241 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 4 1386 200 73 73 0 chr12 105030195 105030236 -16227294 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 4 1386 264 254 51 0 chr12 105030465 105030524 -16227006 + PB1D10 SINE Alu 55 116 -1 4 1386 189 74 0 0 chr12 105030527 105030554 -16226976 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1386 2220 72 35 5 chr12 105031271 105031588 -16225942 - IAPLTR2b LTR ERVK -3 354 1 4 1386 7275 79 10 16 chr12 105031588 105032550 -16224980 - IAPEz-int LTR ERVK 0 6481 5525 4 1386 284 75 25 0 chr12 105032639 105032679 -16224851 - IAPEz-int LTR ERVK -957 5524 5484 4 1386 33326 96 1 12 chr12 105032679 105034235 -16223295 + L1Md_F2 LINE L1 34 1664 -4222 4 1386 3764 55 11 11 chr12 105034235 105034710 -16222820 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1386 33326 72 1 1 chr12 105034710 105038634 -16218896 + L1Md_F2 LINE L1 1665 5589 -297 4 1386 8294 44 2 2 chr12 105038634 105039629 -16217901 + L1Md_F2 LINE L1 5590 6584 -1 4 1386 5921 107 14 5 chr12 105039629 105040464 -16217066 - IAPEz-int LTR ERVK -1000 5481 4639 4 1386 1886 59 17 0 chr12 105040444 105040680 -16216850 - IAPEY3-int LTR ERVK -5183 2497 2258 4 1386 413 88 0 0 chr12 105040685 105040742 -16216788 - B1_Mus1 SINE Alu -91 57 1 4 1386 4320 123 103 59 chr12 105040742 105041566 -16215964 - IAPEz-int LTR ERVK -5486 995 11 4 1386 2175 107 25 12 chr12 105041578 105041901 -16215629 - IAPLTR2b LTR ERVK 0 327 1 4 1386 488 165 86 23 chr12 105043044 105043218 -16214312 + RMER17C LTR ERVK 90 274 -136 4 1386 313 218 37 37 chr12 105043299 105043380 -16214150 - MIRb SINE MIR -95 173 93 5 1386 1296 211 58 32 chr12 105043381 105043690 -16213840 - MTE2b LTR MaLR 0 379 63 5 1386 400 287 100 31 chr12 105043668 105043856 -16213674 - MTE2b LTR MaLR -224 195 3 5 1386 416 139 0 12 chr12 105044090 105044170 -16213360 + CT-rich Low_complexity Low_complexity 3 81 0 5 1386 273 333 55 16 chr12 105044263 105044391 -16213139 - MIR SINE MIR -60 148 16 5 1386 2015 185 59 0 chr12 105046295 105046652 -16210878 - ORR1C1 LTR MaLR 0 378 1 5 1386 1216 215 9 113 chr12 105046933 105047259 -16210271 + ORR1D1 LTR MaLR 42 333 -41 5 1386 182 333 61 0 chr12 105048408 105048474 -16209056 - MIRm SINE MIR -91 185 116 5 1386 640 234 47 88 chr12 105048731 105048923 -16208607 - MTEb LTR MaLR -55 324 141 5 1386 432 277 34 0 chr12 105049277 105049396 -16208134 - MTEb LTR MaLR -238 141 19 5 1386 1986 86 0 4 chr12 105049427 105049694 -16207836 - L1_Mm LINE L1 -356 5527 5262 5 1386 1389 116 0 5 chr12 105049680 105049879 -16207651 + L1_Mm LINE L1 5554 5751 -132 5 1386 9349 56 2 2 chr12 105049867 105051042 -16206488 + L1Md_F2 LINE L1 4412 5586 -297 5 1386 7958 55 9 0 chr12 105051042 105052029 -16205501 + L1Md_F2 LINE L1 5587 6582 0 5 1386 4108 181 49 18 chr12 105052403 105053226 -16204304 + RLTR13A LTR ERVK 1 848 -7 6 1386 253 297 90 45 chr12 105053826 105053960 -16203570 + MIR SINE MIR 28 167 -95 6 1386 493 249 238 26 chr12 105055186 105055413 -16202117 + RMER15 LTR ERVL 301 575 0 6 1386 711 0 0 0 chr12 105055880 105055959 -16201571 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1386 189 161 0 0 chr12 105057437 105057468 -16200062 + L2b LINE L2 3122 3152 -223 6 1386 190 325 172 11 chr12 105059266 105059440 -16198090 - MIRb SINE MIR -16 252 51 6 1386 725 349 17 56 chr12 105060625 105060913 -16196617 + B4A SINE B4 9 285 -7 6 1386 694 225 149 5 chr12 105061470 105061658 -16195872 + B3 SINE B2 2 216 0 6 1386 759 42 0 0 chr12 105061664 105061759 -16195771 + (GGA)n Simple_repeat Simple_repeat 2 96 0 6 1386 284 276 36 0 chr12 105061994 105062078 -16195452 + MIRb SINE MIR 47 129 -133 6 1386 628 274 116 5 chr12 105062492 105062690 -16194840 - ID_B1 SINE B4 0 224 5 7 1386 483 302 21 48 chr12 105063080 105063268 -16194262 - B4 SINE B4 -108 184 2 7 1386 827 299 72 33 chr12 105063550 105063885 -16193645 - MTEa LTR MaLR -31 348 1 7 1386 220 308 15 0 chr12 105064272 105064337 -16193193 + MIRb SINE MIR 63 128 -140 7 1386 321 385 8 0 chr12 105064584 105064714 -16192816 - MIR SINE MIR -112 150 20 7 1386 287 245 253 19 chr12 105065144 105065302 -16192228 + MIR SINE MIR 18 212 -50 7 1386 479 17 17 0 chr12 105065360 105065420 -16192110 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1386 456 62 0 0 chr12 105065420 105065483 -16192047 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1386 252 43 65 0 chr12 105065532 105065578 -16191952 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1386 216 97 0 0 chr12 105065578 105065609 -16191921 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1386 314 18 73 0 chr12 105065646 105065701 -16191829 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 1386 225 94 0 0 chr12 105065701 105065733 -16191797 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1386 201 293 102 48 chr12 105066794 105066997 -16190533 + MIRc SINE MIR 7 224 -44 8 1386 184 176 0 0 chr12 105067979 105068013 -16189517 + MIRb SINE MIR 117 150 -118 8 1386 344 289 131 44 chr12 105068408 105068743 -16188787 + L1M2 LINE L1 2184 2550 -4299 8 1386 469 292 162 71 chr12 105069208 105069379 -16188151 + RMER5 LTR ERV1 40 330 -204 8 1386 880 61 0 0 chr12 105069379 105069493 -16188037 + RLTR28B LTR ERVL 93 206 -275 8 1386 469 292 162 71 chr12 105069493 105069529 -16188001 + RMER5 LTR ERV1 331 394 -140 8 1386 597 69 0 0 chr12 105069529 105069616 -16187914 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 8 1386 207 0 0 0 chr12 105069616 105069639 -16187891 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1386 469 292 162 71 chr12 105069639 105069766 -16187764 + RMER5 LTR ERV1 395 529 -5 8 1386 248 318 105 13 chr12 105069774 105069927 -16187603 + LTR52 LTR ERVL 161 327 -94 8 1386 485 248 47 95 chr12 105069952 105070184 -16187346 + L1M2 LINE L1 4425 4645 -2197 8 1386 1160 164 75 5 chr12 105070185 105070399 -16187131 - ORR1C2 LTR MaLR 0 384 156 8 1386 188 0 74 0 chr12 105070815 105070842 -16186688 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1386 252 200 0 0 chr12 105070992 105071047 -16186483 + GA-rich Low_complexity Low_complexity 3 57 0 9 1386 2512 226 158 27 chr12 105071131 105071939 -16185591 - RMER1B Other Other 0 1066 94 9 1386 2309 84 21 21 chr12 105072093 105072420 -16185110 - IAPLTR2b LTR ERVK 0 327 1 9 1386 182 115 0 0 chr12 105074054 105074080 -16183450 + L3 LINE CR1 4201 4226 -263 9 1386 224 200 134 30 chr12 105074493 105074560 -16182970 + MIRc SINE MIR 80 153 -115 9 1386 423 0 0 0 chr12 105074677 105074724 -16182806 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1386 452 233 8 0 chr12 105076932 105077069 -16180461 - B1F SINE Alu -6 143 34 9 1386 301 310 32 86 chr12 105077185 105077372 -16180158 - B3 SINE B2 0 216 40 9 1386 558 279 83 44 chr12 105077376 105077556 -16179974 - B4A SINE B4 -92 200 14 9 1386 1283 29 23 0 chr12 105077727 105077899 -16179631 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 1 1386 232 302 0 16 chr12 105079057 105079121 -16178409 + PB1D10 SINE Alu 55 117 0 1 1386 201 94 0 0 chr12 105079122 105079154 -16178376 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1386 489 165 86 23 chr12 105081021 105081195 -16176335 + RMER17C LTR ERVK 90 274 -136 1 1386 293 262 12 12 chr12 105081276 105081357 -16176173 - MIRb SINE MIR -95 173 93 1 1386 1190 221 58 35 chr12 105081358 105081668 -16175862 - MTE2b LTR MaLR 0 379 63 1 1386 419 284 100 31 chr12 105081646 105081834 -16175696 - MTE2b LTR MaLR -224 195 3 1 1386 416 139 0 12 chr12 105082069 105082149 -16175381 + CT-rich Low_complexity Low_complexity 3 81 0 1 1386 300 346 47 8 chr12 105082242 105082370 -16175160 - MIR SINE MIR -60 148 16 1 1386 1913 202 59 0 chr12 105084276 105084633 -16172897 - ORR1C1 LTR MaLR 0 378 1 1 1386 1039 234 14 109 chr12 105084912 105085205 -16172325 + ORR1D1 LTR MaLR 40 304 -70 1 1386 2035 66 0 0 chr12 105085250 105085506 -16172024 - L1_Mm LINE L1 -354 5529 5274 1 1386 1543 76 0 5 chr12 105085505 105085704 -16171826 + L1_Mm LINE L1 5554 5751 -132 1 1386 9317 56 3 0 chr12 105085701 105086865 -16170665 + L1Md_F2 LINE L1 4420 5586 -297 1 1386 7976 55 8 0 chr12 105086865 105087853 -16169677 + L1Md_F2 LINE L1 5587 6582 0 1 1386 4126 179 49 15 chr12 105088225 105089045 -16168485 + RLTR13A LTR ERVK 1 848 -7 1 1386 258 301 84 48 chr12 105089616 105089779 -16167751 + MIRc SINE MIR 8 167 -95 1 1386 336 248 252 28 chr12 105091015 105091233 -16166297 + RMER15 LTR ERVL 309 575 0 1 1386 696 12 0 0 chr12 105091699 105091780 -16165750 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1386 191 324 166 11 chr12 105095076 105095251 -16162279 - MIRb SINE MIR -16 252 51 1 1386 261 296 86 50 chr12 105095351 105095490 -16162040 - MER103 DNA DNA -16 150 7 1 1386 686 354 21 59 chr12 105096434 105096722 -16160808 + B4A SINE B4 9 285 -7 1 1386 649 225 147 21 chr12 105097279 105097470 -16160060 + B3 SINE B2 2 216 0 1 1386 246 105 0 0 chr12 105097476 105097514 -16160016 + (GGA)n Simple_repeat Simple_repeat 2 39 0 1 1386 274 321 87 7 chr12 105097752 105097895 -16159635 + MIRb SINE MIR 45 196 -12 1 1386 622 279 114 5 chr12 105098253 105098455 -16159075 - ID_B1 SINE B4 0 224 1 1 1386 472 313 21 48 chr12 105098862 105099050 -16158480 - B4A SINE B4 -108 184 2 1 1386 762 300 79 38 chr12 105099324 105099667 -16157863 - MTEa LTR MaLR -22 357 1 1 1386 201 323 15 0 chr12 105100050 105100115 -16157415 + MIRb SINE MIR 63 128 -140 1 1386 316 344 47 31 chr12 105100362 105100491 -16157039 - MIR SINE MIR -112 150 20 1 1386 255 273 158 20 chr12 105100894 105101081 -16156449 + MIR SINE MIR 1 216 -52 1 1386 888 25 25 0 chr12 105101136 105101255 -16156275 + (TC)n Simple_repeat Simple_repeat 1 122 0 1 1386 228 67 0 0 chr12 105101255 105101284 -16156246 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1386 199 160 17 0 chr12 105103527 105103573 -16153957 + MIRc SINE MIR 114 165 -111 1 1386 334 292 132 30 chr12 105103991 105104297 -16153233 + L1M2 LINE L1 2211 2550 -4299 1 1386 801 64 36 0 chr12 105104932 105105042 -16152488 + RLTR28B LTR ERVL 93 206 -275 1 1386 486 103 0 0 chr12 105105078 105105165 -16152365 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1386 387 0 0 0 chr12 105105165 105105208 -16152322 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1386 450 219 104 16 chr12 105105210 105105335 -16152195 + RMER5 LTR ERV1 395 530 -4 1 1386 479 252 47 95 chr12 105105516 105105748 -16151782 + L1M2 LINE L1 4425 4645 -2197 1 1386 826 212 73 51 chr12 105105749 105105983 -16151547 - ORR1C2 LTR MaLR 0 384 146 1 1386 182 115 0 0 chr12 105107253 105107279 -16150251 + L3 LINE CR1 4201 4226 -263 1 1386 233 267 0 32 chr12 105107697 105107759 -16149771 + MIRc SINE MIR 94 153 -115 1 1386 279 0 0 0 chr12 105107876 105107907 -16149623 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1386 473 259 15 0 chr12 105108900 105109037 -16148493 - B1_Mur1 SINE Alu -6 144 34 1 1386 323 306 21 80 chr12 105109147 105109335 -16148195 - B3 SINE B2 0 216 40 1 1386 548 285 83 44 chr12 105109339 105109519 -16148011 - B4A SINE B4 -92 200 14 1 1386 1135 91 11 0 chr12 105109685 105109860 -16147670 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 1 1386 232 302 0 16 chr12 105111003 105111067 -16146463 + PB1D10 SINE Alu 55 117 0 1 1386 306 50 0 0 chr12 105111068 105111108 -16146422 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1386 7400 35 7 0 chr12 105111214 105112089 -16145441 - L1Md_F2 LINE L1 0 6582 5702 1 1386 38860 49 22 13 chr12 105112086 105118430 -16139100 - L1Md_A LINE L1 0 6582 180 1 1387 456 168 62 57 chr12 105120199 105120376 -16137154 + RMER17C LTR ERVK 97 274 -136 1 1387 305 269 13 13 chr12 105120457 105120536 -16136994 - MIRc SINE MIR -100 168 90 1 1387 1247 231 62 36 chr12 105120537 105120846 -16136684 - MTE2b LTR MaLR 0 379 63 1 1387 351 296 104 28 chr12 105120826 105121012 -16136518 - MTE2b LTR MaLR -224 195 3 1 1387 320 164 0 15 chr12 105121246 105121314 -16136216 + CT-rich Low_complexity Low_complexity 3 69 0 1 1387 227 358 74 0 chr12 105121435 105121530 -16136000 - MIRm SINE MIR -150 126 25 1 1387 1965 193 59 0 chr12 105123438 105123795 -16133735 - ORR1C1 LTR MaLR 0 378 1 1 1387 1229 197 9 113 chr12 105124076 105124402 -16133128 + ORR1D1 LTR MaLR 42 333 -41 1 1387 658 229 47 93 chr12 105125875 105126068 -16131462 - MTEb LTR MaLR -55 324 141 1 1387 435 269 34 0 chr12 105126422 105126541 -16130989 - MTEb LTR MaLR -238 141 19 1 1387 2052 75 0 4 chr12 105126570 105126839 -16130691 - L1_Mm LINE L1 -354 5529 5262 1 1387 1377 121 0 5 chr12 105126825 105127024 -16130506 + L1_Mm LINE L1 5554 5751 -132 1 1387 9132 64 3 1 chr12 105127021 105128186 -16129344 + L1Md_F2 LINE L1 4420 5586 -297 1 1387 7950 56 7 1 chr12 105128187 105129176 -16128354 + L1Md_F2 LINE L1 5588 6582 0 1 1387 4113 155 42 58 chr12 105129550 105130433 -16127097 + RLTR13A3 LTR ERVK 1 971 -7 1 1387 243 299 124 39 chr12 105131016 105131169 -16126361 + MIR SINE MIR 2 167 -95 1 1387 552 231 237 28 chr12 105132350 105132599 -16124931 + RMER15 LTR ERVL 275 575 0 1 1387 465 34 0 0 chr12 105133065 105133124 -16124406 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1387 189 161 0 0 chr12 105134593 105134624 -16122906 + L2b LINE L2 3122 3152 -223 1 1387 781 332 21 59 chr12 105137768 105138056 -16119474 + B4A SINE B4 9 285 -7 1 1387 596 227 158 26 chr12 105138613 105138803 -16118727 + B3 SINE B2 2 216 0 1 1387 372 94 0 0 chr12 105138809 105138862 -16118668 + (GGA)n Simple_repeat Simple_repeat 2 54 0 1 1387 274 309 85 0 chr12 105139106 105139200 -16118330 + MIRb SINE MIR 50 151 -117 1 1387 696 264 114 5 chr12 105139607 105139809 -16117721 - ID_B1 SINE B4 0 224 1 1 1387 526 296 21 48 chr12 105140216 105140404 -16117126 - B4 SINE B4 -108 184 2 1 1387 772 317 67 26 chr12 105140674 105141017 -16116513 - MTEa LTR MaLR -22 357 1 1 1387 220 308 15 0 chr12 105141404 105141469 -16116061 + MIRb SINE MIR 63 128 -140 1 1387 372 375 8 0 chr12 105141716 105141863 -16115667 - MIR SINE MIR -114 154 6 1 1387 332 228 245 27 chr12 105142279 105142455 -16115075 + MIR SINE MIR 18 235 -33 1 1387 630 0 0 0 chr12 105142492 105142562 -16114968 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1387 396 0 0 0 chr12 105142562 105142605 -16114925 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1387 201 241 103 27 chr12 105143682 105143787 -16113743 + MIRc SINE MIR 7 126 -142 1 1387 237 231 196 11 chr12 105144809 105144901 -16112629 + MIR SINE MIR 35 143 -119 1 1387 346 307 113 36 chr12 105145390 105145637 -16111893 + L1M2 LINE L1 2285 2550 -4299 1 1387 898 53 0 0 chr12 105146266 105146380 -16111150 + RLTR28B LTR ERVL 93 206 -275 1 1387 486 131 0 0 chr12 105146416 105146515 -16111015 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 1387 477 0 0 0 chr12 105146515 105146568 -16110962 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1387 461 242 96 8 chr12 105146570 105146695 -16110835 + RMER5 LTR ERV1 395 530 -4 1 1387 487 244 42 116 chr12 105146853 105147112 -16110418 + L1M2 LINE L1 4406 4645 -2197 1 1387 1108 178 79 19 chr12 105147113 105147356 -16110174 - ORR1C2 LTR MaLR 0 421 156 1 1387 1882 103 31 25 chr12 105147417 105147737 -16109793 - RLTRETN_Mm LTR ERVK 0 322 1 1 1387 18207 144 35 26 chr12 105147737 105151041 -16106489 - ETnERV2-int LTR ERVK -107 7299 3754 1 1387 184 209 47 0 chr12 105151041 105151084 -16106446 + L4 LINE RTE 754 798 -1231 1 1387 18207 144 35 26 chr12 105151084 105154578 -16102952 - ETnERV2-int LTR ERVK -107 3753 1 1 1387 1933 102 31 22 chr12 105154578 105154897 -16102633 - RLTRETN_Mm LTR ERVK 0 322 1 1 1387 245 197 0 16 chr12 105155401 105155463 -16102067 + GA-rich Low_complexity Low_complexity 5 65 0 1 1387 2529 229 157 28 chr12 105155541 105156360 -16101170 - RMER1B Other Other 0 1066 92 1 1387 182 115 0 0 chr12 105158046 105158072 -16099458 + L3 LINE CR1 4201 4226 -263 1 1387 495 0 0 0 chr12 105158670 105158725 -16098805 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1387 506 207 8 0 chr12 105160952 105161089 -16096441 - B1F SINE Alu -6 143 34 1 1387 292 335 21 80 chr12 105161205 105161393 -16096137 - B3 SINE B2 0 216 40 1 1387 552 269 89 50 chr12 105161397 105161577 -16095953 - B4A SINE B4 -92 200 14 1 1387 819 85 23 0 chr12 105161744 105161874 -16095656 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 1 1387 264 254 51 0 chr12 105163015 105163074 -16094456 + PB1D10 SINE Alu 55 116 -1 1 1387 225 65 0 0 chr12 105163077 105163108 -16094422 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1387 25 0 0 0 chr12 105163559 105163584 -16093946 + AT_rich Low_complexity Low_complexity 1 25 0 1 1387 232 277 47 122 chr12 105163767 105163874 -16093656 + BGLII_A LTR ERVK 40 138 -307 1 1387 429 182 61 56 chr12 105164979 105165159 -16092371 + RMER17C LTR ERVK 97 277 -133 1 1387 315 253 12 12 chr12 105165235 105165315 -16092215 - MIRb SINE MIR -96 172 93 1 1387 1362 205 48 26 chr12 105165316 105165626 -16091904 - MTE2b LTR MaLR 0 379 63 1 1387 349 276 111 41 chr12 105165604 105165792 -16091738 - MTE2b LTR MaLR -224 195 3 1 1387 404 139 0 12 chr12 105166027 105166107 -16091423 + CT-rich Low_complexity Low_complexity 3 81 0 2 1387 243 354 73 6 chr12 105166195 105166323 -16091207 - MIRm SINE MIR -110 152 21 2 1387 2383 82 101 11 chr12 105167868 105168226 -16089304 - RLTR10 LTR ERVK 0 390 1 2 1387 8633 17 0 0 chr12 105168228 105169223 -16088307 - RLTR10-int LTR ERVK -3 1984 990 2 1387 308 256 62 39 chr12 105169305 105169435 -16088095 - RLTR10-int LTR ERVK -5987 1594 1462 2 1387 5685 36 4 3 chr12 105169498 105170194 -16087336 - RLTR10-int LTR ERVK -989 998 302 2 1387 2379 80 107 11 chr12 105170194 105170550 -16086980 - RLTR10 LTR ERVK 0 390 1 2 1387 2085 168 140 82 chr12 105170627 105171197 -16086333 + RLTR6_Mm LTR ERV1 1 603 -51 2 1387 4880 58 13 0 chr12 105171198 105172111 -16085419 + RLTR6-int LTR ERV1 1 1039 -6739 2 1387 14942 47 1 0 chr12 105172090 105173913 -16083617 + RLTR6-int LTR ERV1 5955 7778 0 2 1387 247 240 211 39 chr12 105173913 105174017 -16083513 + RLTR6_Mm LTR ERV1 1 122 -532 2 1387 2078 102 280 54 chr12 105174019 105174466 -16083064 + RLTR6_Mm LTR ERV1 37 584 -70 2 1387 2096 174 59 0 chr12 105174771 105175128 -16082402 - ORR1C1 LTR MaLR 0 378 1 2 1387 1264 203 9 110 chr12 105175405 105175732 -16081798 + ORR1D1 LTR MaLR 40 333 -41 2 1387 321 124 0 3 chr12 105177148 105177208 -16080322 - MTD LTR MaLR 0 421 360 2 1387 343 307 85 60 chr12 105177210 105177411 -16080119 - ORR1B2 LTR MaLR 0 367 162 2 1387 229 346 75 0 chr12 105178340 105178447 -16079083 + MLT1D LTR MaLR 374 488 -17 2 1387 668 274 30 47 chr12 105179137 105179226 -16078304 - MTEb LTR MaLR -1 378 288 2 1387 189 0 0 0 chr12 105179226 105179247 -16078283 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 2 1387 668 274 30 47 chr12 105179247 105179391 -16078139 - MTEb LTR MaLR -92 287 149 2 1387 482 252 32 31 chr12 105179714 105179889 -16077641 - MTEb LTR MaLR -214 165 3 2 1387 1978 71 0 4 chr12 105179898 105180167 -16077363 - L1_Mm LINE L1 -354 5529 5262 2 1387 1335 111 0 5 chr12 105180153 105180352 -16077178 + L1_Mm LINE L1 5554 5751 -132 2 1387 7729 62 2 1 chr12 105180340 105181382 -16076148 + L1_Mm LINE L1 4412 5454 -429 2 1387 4072 182 49 17 chr12 105181540 105182362 -16075168 + RLTR13A LTR ERVK 1 848 -7 2 1387 264 328 61 30 chr12 105182957 105183089 -16074441 + MIR SINE MIR 28 163 -99 2 1387 354 257 242 31 chr12 105184313 105184540 -16072990 + RMER15 LTR ERVL 301 575 0 2 1387 444 140 0 0 chr12 105185027 105185120 -16072410 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 1387 191 161 0 0 chr12 105186600 105186631 -16070899 + L2b LINE L2 3122 3152 -223 2 1387 206 324 160 11 chr12 105188430 105188617 -16068913 - MIRb SINE MIR -16 252 38 2 1387 741 339 21 59 chr12 105189787 105190075 -16067455 + B4A SINE B4 9 285 -7 2 1387 777 218 143 5 chr12 105190630 105190819 -16066711 + B3 SINE B2 2 216 0 2 1387 462 36 0 0 chr12 105190825 105190881 -16066649 + (GGA)n Simple_repeat Simple_repeat 2 57 0 2 1387 191 325 99 12 chr12 105191117 105191198 -16066332 + MIRc SINE MIR 61 148 -120 2 1387 719 264 114 5 chr12 105191605 105191807 -16065723 - ID_B1 SINE B4 0 224 1 2 1387 520 327 19 60 chr12 105192187 105192402 -16065128 - B4 SINE B4 -85 207 2 2 1387 764 314 67 26 chr12 105192653 105192996 -16064534 - MTEa LTR MaLR -22 357 1 2 1387 251 277 15 0 chr12 105193383 105193448 -16064082 + MIRb SINE MIR 63 128 -140 2 1387 374 375 8 0 chr12 105193696 105193843 -16063687 - MIR SINE MIR -114 154 6 2 1387 336 228 240 34 chr12 105194230 105194448 -16063082 + MIR SINE MIR 1 247 -21 2 1387 650 13 13 0 chr12 105194472 105194551 -16062979 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 1387 486 0 0 0 chr12 105194551 105194604 -16062926 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1387 182 244 0 24 chr12 105195743 105195785 -16061745 + MIRc SINE MIR 83 123 -145 2 1387 619 185 5 33 chr12 105197455 105197639 -16059891 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1387 270 0 0 0 chr12 105198207 105198237 -16059293 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1387 302 297 63 13 chr12 105198258 105198369 -16059161 + MIRm SINE MIR 55 170 -98 2 1387 3192 66 25 23 chr12 105198970 105199403 -16058127 - L1_Mus2 LINE L1 0 6566 6133 2 1387 1059 211 29 0 chr12 105199470 105199678 -16057852 + B3 SINE B2 3 216 0 2 1387 306 0 0 0 chr12 105199795 105199829 -16057701 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1387 216 0 0 0 chr12 105201160 105201184 -16056346 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1387 351 0 0 0 chr12 105202153 105202192 -16055338 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1387 657 267 0 0 chr12 105202557 105202692 -16054838 + B1F1 SINE Alu 5 139 -10 2 1387 339 25 0 0 chr12 105202770 105202810 -16054720 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1387 499 294 39 7 chr12 105203673 105203827 -16053703 + MTEa LTR MaLR 3 161 -218 2 1387 339 239 0 0 chr12 105203834 105203901 -16053629 + MTEa LTR MaLR 303 369 -10 2 1387 714 210 0 0 chr12 105204506 105204739 -16052791 + (CA)n Simple_repeat Simple_repeat 1 233 0 2 1387 450 216 0 0 chr12 105204768 105204893 -16052637 + (CA)n Simple_repeat Simple_repeat 1 125 0 2 1387 1071 228 20 0 chr12 105205975 105206177 -16051353 - B3 SINE B2 -10 206 1 2 1387 412 341 112 47 chr12 105206341 105206857 -16050673 - L2 LINE L2 -1659 1760 1211 2 1387 194 287 181 20 chr12 105206910 105207109 -16050421 - L2 LINE L2 -2512 907 677 2 1387 249 364 54 22 chr12 105207209 105207365 -16050165 - L2c LINE L2 -278 3109 2946 2 1387 630 203 106 50 chr12 105208372 105208533 -16048997 - B3A SINE B2 0 198 29 2 1387 1827 248 83 4 chr12 105208537 105209356 -16048174 - Lx6 LINE L1 -18 7442 6277 2 1387 563 257 75 139 chr12 105209483 105209763 -16047767 - LTR41 LTR ERVL -485 283 22 2 1387 198 326 160 17 chr12 105209782 105209963 -16047567 + L2 LINE L2 2516 2722 -697 2 1387 234 274 144 19 chr12 105209990 105210094 -16047436 + MLT1A1 LTR MaLR 26 142 -266 2 1387 879 247 10 51 chr12 105210328 105210524 -16047006 + B3 SINE B2 1 188 -28 2 1387 468 0 0 0 chr12 105210530 105210582 -16046948 + (TAAAA)n Simple_repeat Simple_repeat 5 56 0 2 1387 432 0 0 0 chr12 105211508 105211556 -16045974 + (TGG)n Simple_repeat Simple_repeat 2 49 0 2 1387 740 218 44 21 chr12 105211571 105211756 -16045774 - B3 SINE B2 -18 198 12 2 1387 648 258 14 53 chr12 105211763 105211972 -16045558 + Lx8 LINE L1 7142 7342 -131 2 1387 3679 41 0 2 chr12 105212012 105212476 -16045054 - L1_Mus4 LINE L1 -309 6327 5865 2 1387 2206 102 0 6 chr12 105212476 105212791 -16044739 + L1_Mus4 LINE L1 6324 6636 0 2 1387 299 25 25 0 chr12 105213252 105213292 -16044238 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2 1387 744 12 0 0 chr12 105214314 105214399 -16043131 + (GA)n Simple_repeat Simple_repeat 2 86 0 2 1387 371 305 190 0 chr12 105214980 105215154 -16042376 + MLT1A0 LTR MaLR 86 292 -73 2 1387 855 0 0 0 chr12 105215661 105215756 -16041774 + (TC)n Simple_repeat Simple_repeat 1 95 0 2 1387 225 191 90 60 chr12 105216261 105216328 -16041202 - RLTR23 LTR ERV1 -237 193 125 2 1387 443 273 7 20 chr12 105217818 105217971 -16039559 + L1M1 LINE L1 5454 5604 -696 2 1387 279 282 12 0 chr12 105219334 105219419 -16038111 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1387 252 331 202 6 chr12 105220149 105220307 -16037223 + RMER15 LTR ERVL 346 534 -41 2 1387 358 53 88 0 chr12 105220425 105220482 -16037048 - B2_Mm1a SINE B2 -5 188 127 2 1387 1372 68 23 0 chr12 105220517 105220693 -16036837 - B2_Mm2 SINE B2 -14 181 2 2 1387 181 336 164 0 chr12 105221545 105221649 -16035881 + L2b LINE L2 2585 2705 -714 2 1387 932 96 29 0 chr12 105221776 105221912 -16035618 + URR1B DNA MER1_type 86 225 0 2 1387 961 122 0 0 chr12 105222156 105222295 -16035235 + MTC LTR MaLR 145 283 -138 2 1387 492 99 0 0 chr12 105222330 105222401 -16035129 + (TTA)n Simple_repeat Simple_repeat 3 73 0 2 1387 207 345 94 39 chr12 105222485 105222666 -16034864 - MIR SINE MIR -13 249 59 2 1387 701 237 120 38 chr12 105223256 105223440 -16034090 - B3 SINE B2 -3 213 15 2 1387 214 298 22 77 chr12 105223619 105223710 -16033820 + B4A SINE B4 62 147 -145 2 1387 278 220 34 0 chr12 105223653 105223712 -16033818 + PB1D7 SINE Alu 6 66 -54 2 1387 185 348 124 37 chr12 105223854 105224015 -16033515 + L2b LINE L2 3131 3305 -70 2 1387 1127 104 6 0 chr12 105224892 105225065 -16032465 + (TTCC)n Simple_repeat Simple_repeat 4 177 0 2 1387 257 223 22 25 chr12 105225066 105225247 -16032283 + CT-rich Low_complexity Low_complexity 1 180 0 2 1387 198 0 0 0 chr12 105225247 105225269 -16032261 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2 1387 224 237 13 38 chr12 105225269 105225284 -16032246 + polypyrimidine Low_complexity Low_complexity 3 16 0 2 1387 1006 162 141 5 chr12 105225396 105225594 -16031936 - URR1A DNA MER1_type -1 225 1 2 1387 901 332 92 21 chr12 105225839 105226261 -16031269 + MLT1C LTR MaLR 1 452 -15 2 1387 216 257 165 52 chr12 105227070 105227185 -16030345 + MIR SINE MIR 14 141 -121 2 1387 695 100 9 0 chr12 105227955 105228065 -16029465 + (TAGA)n Simple_repeat Simple_repeat 1 111 0 2 1387 742 225 0 0 chr12 105228612 105228741 -16028789 + B3A SINE B2 1 129 -69 2 1387 839 227 75 97 chr12 105228846 105229124 -16028406 - B4 SINE B4 -20 272 1 2 1387 7039 47 2 1 chr12 105229183 105230030 -16027500 + L1Md_F2 LINE L1 5723 6570 -12 2 1387 600 267 50 22 chr12 105233172 105233352 -16024178 - MTEb LTR MaLR -2 377 193 2 1387 1014 9 0 0 chr12 105233770 105233885 -16023645 + (TC)n Simple_repeat Simple_repeat 2 116 0 2 1387 672 67 0 0 chr12 105234554 105234644 -16022886 + (TCTCCC)n Simple_repeat Simple_repeat 2 91 0 2 1387 236 333 76 15 chr12 105236835 105236966 -16020564 + MER3 DNA MER1_type 10 148 -61 2 1387 445 110 0 21 chr12 105237018 105237111 -16020419 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1387 536 241 103 0 chr12 105237118 105237263 -16020267 - RSINE1 SINE B4 -2 163 4 2 1387 340 253 0 0 chr12 105237263 105237339 -16020191 + MER3 DNA MER1_type 132 207 -2 2 1387 607 301 26 43 chr12 105238991 105239224 -16018306 + ORR1D2 LTR MaLR 141 369 -1 2 1387 180 158 35 17 chr12 105239952 105240010 -16017520 + (CATA)n Simple_repeat Simple_repeat 4 62 0 2 1387 200 130 73 18 chr12 105240027 105240082 -16017448 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1387 270 176 0 0 chr12 105240082 105240133 -16017397 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 2 1387 183 157 11 67 chr12 105240228 105240317 -16017213 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 2 1387 312 163 23 11 chr12 105240451 105240538 -16016992 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1387 504 352 65 36 chr12 105240541 105240782 -16016748 + L1M4 LINE L1 71 320 -6222 3 1387 450 248 53 0 chr12 105240782 105240895 -16016635 + PB1D7 SINE Alu 2 120 0 3 1387 504 352 65 36 chr12 105240895 105241130 -16016400 + L1M4 LINE L1 321 561 -5981 3 1387 413 360 42 4 chr12 105241413 105241672 -16015858 + L1M4 LINE L1 551 819 -5723 3 1387 647 247 101 28 chr12 105241819 105241998 -16015532 + B3A SINE B2 1 192 -6 3 1387 233 323 66 36 chr12 105242023 105242190 -16015340 + L1M4 LINE L1 1056 1227 -5315 3 1387 359 339 68 5 chr12 105242234 105242456 -16015074 + L1M4 LINE L1 1321 1556 -4986 3 1387 425 293 90 8 chr12 105242796 105242930 -16014600 + B1F2 SINE Alu 5 149 0 3 1387 1022 191 60 0 chr12 105242970 105243169 -16014361 + B3 SINE B2 1 211 -5 3 1387 444 312 95 49 chr12 105243178 105243505 -16014025 + L1M4 LINE L1 2252 2593 -4147 3 1387 450 181 69 48 chr12 105243614 105243759 -16013771 + L1MB7 LINE L1 5350 5497 -681 3 1387 665 247 56 49 chr12 105243763 105243925 -16013605 + RSINE1 SINE B4 3 165 0 3 1387 357 299 53 18 chr12 105244063 105244233 -16013297 + L1MB7 LINE L1 5584 5759 -425 3 1387 201 132 0 0 chr12 105244378 105244416 -16013114 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1387 403 283 81 88 chr12 105244419 105244679 -16012851 + L1MB7 LINE L1 5808 6065 -119 3 1387 1291 176 9 18 chr12 105244769 105244995 -16012535 - URR1A DNA MER1_type -2 224 1 3 1387 359 269 15 15 chr12 105245229 105245361 -16012169 + (TGGA)n Simple_repeat Simple_repeat 1 132 0 3 1387 787 234 52 28 chr12 105246069 105246280 -16011250 + ID_B1 SINE B4 2 217 -7 3 1387 780 99 20 27 chr12 105246306 105246452 -16011078 + (GAAAA)n Simple_repeat Simple_repeat 2 146 0 3 1387 262 256 87 61 chr12 105247194 105247366 -16010164 - MIRc SINE MIR -65 203 25 3 1387 1002 267 9 26 chr12 105247553 105247780 -16009750 + ID_B1 SINE B4 1 223 -1 3 1387 690 192 0 60 chr12 105247786 105247919 -16009611 + B1_Mur1 SINE Alu 22 146 -3 3 1387 254 283 27 36 chr12 105247926 105248036 -16009494 + PB1D10 SINE Alu 9 117 0 3 1387 390 193 261 0 chr12 105248161 105248280 -16009250 - MER57C2 LTR ERV1 -284 150 1 3 1387 200 205 26 0 chr12 105248444 105248483 -16009047 + CT-rich Low_complexity Low_complexity 4 43 0 3 1387 447 298 0 0 chr12 105248485 105248589 -16008941 - PB1D7 SINE Alu -9 111 8 3 1387 1012 289 15 34 chr12 105248679 105248941 -16008589 + B4 SINE B4 15 271 -21 3 1387 243 0 0 0 chr12 105248953 105248980 -16008550 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1387 657 0 0 0 chr12 105248980 105249052 -16008478 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1388 576 0 0 0 chr12 105251384 105251448 -16006082 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1388 324 371 89 55 chr12 105252613 105252938 -16004592 + L2b LINE L2 3038 3373 -2 3 1388 248 339 47 47 chr12 105253749 105253876 -16003654 - RMER5 LTR ERV1 -366 168 42 3 1388 6829 198 89 57 chr12 105254040 105255869 -16001661 - Lx7 LINE L1 0 7696 5810 3 1388 823 240 24 63 chr12 105256038 105256243 -16001287 + B3A SINE B2 2 198 0 3 1388 312 284 21 21 chr12 105257520 105257617 -15999913 + L1MC4a LINE L1 7639 7735 -147 3 1388 590 238 0 89 chr12 105257690 105257847 -15999683 + B1_Mur2 SINE Alu 1 143 -6 3 1388 544 317 54 27 chr12 105257896 105258045 -15999485 + RSINE1 SINE B4 3 155 -10 3 1388 270 0 0 0 chr12 105258045 105258075 -15999455 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1388 4216 112 26 40 chr12 105258608 105259258 -15998272 - RLTR33 LTR ERVK -1 677 37 3 1388 1864 274 63 38 chr12 105259271 105260069 -15997461 + RMER13A LTR ERVK 14 860 0 3 1388 3317 62 2 2 chr12 105260074 105260479 -15997051 - MTB_Mm LTR MaLR 0 407 3 3 1388 328 351 19 0 chr12 105260902 105261056 -15996474 + L1MC4a LINE L1 7636 7792 -90 3 1388 232 329 0 14 chr12 105261090 105261161 -15996369 + ID4_ SINE ID 13 82 -1 3 1388 540 0 0 0 chr12 105262302 105262362 -15995168 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1388 29 28 0 0 chr12 105263080 105263116 -15994414 + AT_rich Low_complexity Low_complexity 1 36 0 3 1388 373 278 118 18 chr12 105263627 105263737 -15993793 - RSINE1 SINE B4 -43 122 2 3 1388 342 329 44 25 chr12 105264916 105265075 -15992455 + L2a LINE L2 3235 3396 -30 3 1388 430 353 6 11 chr12 105265103 105265322 -15992208 + (TGGG)n Simple_repeat Simple_repeat 1 217 0 3 1388 3118 41 8 10 chr12 105265323 105265718 -15991812 + MTB LTR MaLR 2 395 -5 3 1388 216 0 0 0 chr12 105265718 105265742 -15991788 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 3 1388 287 358 0 32 chr12 105265745 105265805 -15991725 + (TAGG)n Simple_repeat Simple_repeat 1 59 0 3 1388 575 112 10 0 chr12 105265805 105265903 -15991627 + (CATA)n Simple_repeat Simple_repeat 2 100 0 3 1388 287 358 0 32 chr12 105265903 105265929 -15991601 + (TAGG)n Simple_repeat Simple_repeat 4 27 0 3 1388 206 105 26 0 chr12 105265929 105265967 -15991563 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 3 1388 287 358 0 32 chr12 105265967 105266064 -15991466 + (TAGG)n Simple_repeat Simple_repeat 4 99 0 3 1388 184 381 24 0 chr12 105266115 105266180 -15991350 + MIRb SINE MIR 65 130 -138 3 1388 360 0 0 0 chr12 105266180 105266220 -15991310 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1388 184 381 24 0 chr12 105266220 105266238 -15991292 + MIRb SINE MIR 131 149 -119 3 1388 219 227 23 0 chr12 105267209 105267253 -15990277 - ID SINE ID -164 60 16 3 1388 335 176 27 23 chr12 105269129 105269203 -15988327 + ORR1D2 LTR MaLR 47 111 -248 3 1388 1342 226 82 3 chr12 105269725 105270066 -15987464 + ORR1D2 LTR MaLR 2 369 -1 3 1388 547 294 28 22 chr12 105270107 105270288 -15987242 - MER53 DNA hAT -2 191 10 3 1388 483 33 0 0 chr12 105271997 105272058 -15985472 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1388 492 18 0 0 chr12 105272059 105272116 -15985414 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1388 240 265 120 44 chr12 105272223 105272381 -15985149 - L2 LINE L2 -1098 2321 2152 3 1388 211 262 0 32 chr12 105272516 105272579 -15984951 + GA-rich Low_complexity Low_complexity 5 65 0 3 1388 477 122 0 0 chr12 105272713 105272787 -15984743 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1388 248 257 12 75 chr12 105273486 105273566 -15983964 + L2c LINE L2 3092 3166 -260 3 1388 744 274 60 84 chr12 105274456 105274755 -15982775 - B4A SINE B4 0 292 1 3 1388 207 352 148 0 chr12 105274857 105274945 -15982585 + MIRb SINE MIR 54 154 -114 3 1388 441 95 0 0 chr12 105275458 105275521 -15982009 + (CCA)n Simple_repeat Simple_repeat 1 63 0 3 1388 638 308 25 6 chr12 105276895 105277052 -15980478 - RSINE1 SINE B4 -2 163 4 3 1388 180 111 0 0 chr12 105277099 105277126 -15980404 + (CATA)n Simple_repeat Simple_repeat 2 28 0 3 1388 680 247 69 106 chr12 105277143 105277446 -15980084 - B4 SINE B4 0 292 1 3 1388 266 336 72 26 chr12 105277730 105277883 -15979647 + MLT1K LTR MaLR 400 559 -36 3 1388 4353 126 35 3 chr12 105278581 105279267 -15978263 + RMER12 LTR ERVK 1 708 -614 3 1388 758 173 29 22 chr12 105279476 105279612 -15977918 + B1_Mur4 SINE Alu 1 137 -13 3 1388 180 0 0 0 chr12 105279614 105279634 -15977896 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1388 297 0 0 0 chr12 105280861 105280894 -15976636 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1388 386 394 48 15 chr12 105280946 105281214 -15976316 - MER2 DNA MER2_type -67 278 2 3 1388 441 0 0 0 chr12 105282045 105282094 -15975436 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1388 266 0 29 0 chr12 105282928 105282962 -15974568 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1388 1225 55 0 0 chr12 105282962 105283107 -15974423 - B1_Mus1 SINE Alu -2 146 2 3 1388 1045 249 128 15 chr12 105283258 105283593 -15973937 + MTEa LTR MaLR 5 377 -2 3 1388 23 0 0 0 chr12 105283773 105283796 -15973734 + AT_rich Low_complexity Low_complexity 1 23 0 3 1388 317 289 30 20 chr12 105284956 105285055 -15972475 - L2b LINE L2 -200 3175 3076 3 1388 750 305 13 67 chr12 105285476 105285715 -15971815 + B4 SINE B4 3 228 -64 3 1388 811 278 75 3 chr12 105285735 105285959 -15971571 + ID_B1 SINE B4 23 272 -20 3 1388 366 139 0 0 chr12 105285988 105286060 -15971470 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1388 252 284 14 0 chr12 105286372 105286446 -15971084 + L1M5 LINE L1 5032 5106 -1040 3 1388 743 286 57 5 chr12 105286489 105286700 -15970830 + B4A SINE B4 2 223 -69 3 1388 547 347 11 51 chr12 105287549 105287725 -15969805 + B3A SINE B2 2 170 -28 3 1388 429 76 0 0 chr12 105287738 105287804 -15969726 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1388 222 37 0 0 chr12 105287937 105287964 -15969566 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1388 558 0 0 0 chr12 105288857 105288919 -15968611 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1388 27 73 0 0 chr12 105289731 105289786 -15967744 + AT_rich Low_complexity Low_complexity 1 55 0 3 1388 450 0 0 0 chr12 105289843 105289893 -15967637 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1388 225 322 10 15 chr12 105290546 105290650 -15966880 + MIR3 SINE MIR 85 182 -26 3 1388 580 224 22 29 chr12 105291114 105291252 -15966278 + B1F1 SINE Alu 5 141 -8 3 1388 371 179 12 0 chr12 105291292 105291346 -15966184 + polypurine Low_complexity Low_complexity 1 54 0 3 1388 1045 128 0 11 chr12 105291346 105291528 -15966002 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1388 908 152 8 11 chr12 105291528 105291622 -15965908 + polypurine Low_complexity Low_complexity 1 93 0 3 1388 987 134 6 11 chr12 105291622 105291803 -15965727 + GA-rich Low_complexity Low_complexity 1 180 0 3 1388 908 140 6 16 chr12 105291803 105291921 -15965609 + polypurine Low_complexity Low_complexity 63 179 0 3 1388 230 355 60 53 chr12 105292286 105292448 -15965082 + MIRc SINE MIR 24 188 -88 3 1388 633 14 0 0 chr12 105292576 105292650 -15964880 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1388 640 252 25 25 chr12 105292666 105292825 -15964705 - B3A SINE B2 -36 162 4 3 1388 317 82 20 0 chr12 105292825 105292874 -15964656 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 4 1388 354 208 87 19 chr12 105293815 105293918 -15963612 - ID_B1 SINE B4 -12 212 103 4 1388 238 356 26 32 chr12 105295463 105295587 -15961943 + MIRb SINE MIR 36 158 -118 4 1388 379 204 117 11 chr12 105296272 105296366 -15961164 + B1_Mur1 SINE Alu 41 144 -5 4 1388 1130 73 6 16 chr12 105296368 105296550 -15960980 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1388 414 0 0 0 chr12 105296631 105296677 -15960853 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1388 892 156 7 0 chr12 105296695 105296830 -15960700 + B1_Mur2 SINE Alu 4 139 -10 4 1388 477 287 59 78 chr12 105298613 105298817 -15958713 + B4A SINE B4 86 285 -7 4 1388 414 0 0 0 chr12 105298851 105298897 -15958633 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1388 1253 319 40 57 chr12 105298907 105299639 -15957891 - Lx9 LINE L1 -240 7404 6686 4 1388 1763 143 38 71 chr12 105299688 105300110 -15957420 - RMER17C LTR ERVK 0 410 3 4 1388 455 298 129 82 chr12 105300228 105300513 -15957017 - ORR1E LTR MaLR -3 356 51 4 1388 1714 154 46 179 chr12 105300513 105300809 -15956721 + RMER10B LTR ERVL 1 263 -135 4 1388 1205 96 6 0 chr12 105300809 105300987 -15956543 + (TCC)n Simple_repeat Simple_repeat 2 180 0 4 1388 1714 154 46 179 chr12 105300987 105301148 -15956382 + RMER10B LTR ERVL 264 397 -1 4 1388 455 298 129 82 chr12 105301148 105301202 -15956328 - ORR1E LTR MaLR -309 50 1 4 1388 493 245 101 72 chr12 105301896 105302103 -15955427 - MLT1C LTR MaLR -220 247 35 4 1388 369 62 0 0 chr12 105302107 105302155 -15955375 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1388 347 274 21 0 chr12 105302622 105302717 -15954813 - PB1D10 SINE Alu -6 111 15 4 1388 305 367 136 10 chr12 105303918 105304116 -15953414 + HAL1-3A_ME LINE L1 1975 2197 -661 4 1388 260 154 0 19 chr12 105304129 105304182 -15953348 + GA-rich Low_complexity Low_complexity 3 54 0 4 1388 1183 257 125 3 chr12 105304601 105304929 -15952601 + ORR1D2 LTR MaLR 1 368 -2 4 1388 180 0 0 0 chr12 105305071 105305091 -15952439 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1388 504 0 0 0 chr12 105305091 105305146 -15952384 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 1388 1507 98 53 4 chr12 105305352 105305597 -15951933 + L1_Mus3 LINE L1 6382 6638 0 4 1388 285 146 0 0 chr12 105306270 105306318 -15951212 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 4 1388 1221 85 0 0 chr12 105306320 105306543 -15950987 + (TTTC)n Simple_repeat Simple_repeat 1 223 0 4 1388 601 204 82 22 chr12 105306544 105306679 -15950851 - B1_Mus1 SINE Alu -5 143 1 4 1388 995 318 149 7 chr12 105306681 105307226 -15950304 - Lx8 LINE L1 -159 7314 6693 4 1388 22 0 0 0 chr12 105307264 105307286 -15950244 + AT_rich Low_complexity Low_complexity 1 22 0 4 1388 191 133 22 0 chr12 105307747 105307792 -15949738 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1388 304 337 33 0 chr12 105307810 105307902 -15949628 - MER20 DNA MER1_type -70 149 55 4 1388 430 199 3 193 chr12 105308181 105308371 -15949159 - ORR1A4 LTR MaLR -131 195 40 4 1388 225 254 116 61 chr12 105309661 105309808 -15947722 - RMER17A LTR ERVK -278 473 319 4 1388 597 64 0 0 chr12 105309808 105309886 -15947644 + (GGGAGA)n Simple_repeat Simple_repeat 5 82 0 4 1388 2845 62 0 0 chr12 105310239 105310591 -15946939 - L1Md_F2 LINE L1 -3 6579 6228 4 1388 202 342 84 36 chr12 105310866 105311033 -15946497 + L2b LINE L2 2986 3160 -215 4 1388 340 292 72 184 chr12 105311371 105311719 -15945811 - MLT1H1 LTR MaLR -11 544 170 4 1388 360 0 0 0 chr12 105312174 105312214 -15945316 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1388 312 296 144 27 chr12 105313089 105313200 -15944330 + RSINE1 SINE B4 2 125 -40 4 1388 207 161 0 0 chr12 105313212 105313243 -15944287 + (CCAA)n Simple_repeat Simple_repeat 3 33 0 4 1388 277 250 9 107 chr12 105314159 105314271 -15943259 + MT2B2 LTR ERVL 141 241 -343 4 1388 533 281 35 28 chr12 105314190 105314333 -15943197 + B1F1 SINE Alu 6 149 0 4 1388 201 147 0 0 chr12 105315248 105315282 -15942248 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 4 1388 248 327 75 28 chr12 105316234 105316341 -15941189 - MER81 DNA AcHobo -1 113 2 4 1388 294 342 8 70 chr12 105316842 105316971 -15940559 + PB1 SINE Alu 3 123 -4 4 1388 667 257 70 50 chr12 105317079 105317280 -15940250 + B3 SINE B2 9 213 -3 4 1388 212 344 78 0 chr12 105317308 105317372 -15940158 + ID4 SINE ID 5 73 -10 4 1388 296 324 128 27 chr12 105317383 105317532 -15939998 + Cheshire DNA MER1_type 113 276 -2144 4 1388 663 283 14 0 chr12 105319684 105319829 -15937701 - RSINE1 SINE B4 -17 148 2 4 1388 679 261 88 44 chr12 105319977 105320181 -15937349 - B3A SINE B2 -1 215 3 4 1388 882 172 188 0 chr12 105320182 105320368 -15937162 - URR1A DNA MER1_type -1 225 5 4 1388 372 328 142 33 chr12 105320423 105320852 -15936678 + L2 LINE L2 1065 1540 -1879 4 1388 285 383 0 17 chr12 105320992 105321109 -15936421 + LTR33C LTR ERVL 124 238 -391 4 1388 204 70 45 23 chr12 105321170 105321214 -15936316 + (GGAGA)n Simple_repeat Simple_repeat 2 46 0 4 1388 269 317 0 129 chr12 105321403 105321470 -15936060 - MTEb LTR MaLR -274 105 53 4 1388 813 198 203 0 chr12 105321470 105321657 -15935873 - URR1B DNA MER1_type 0 225 1 4 1388 269 317 0 129 chr12 105321657 105321705 -15935825 - MTEb LTR MaLR -327 52 5 4 1388 465 19 0 0 chr12 105322471 105322525 -15935005 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1388 658 23 88 29 chr12 105322526 105322663 -15934867 + (CAGAGA)n Simple_repeat Simple_repeat 2 146 0 4 1388 523 358 65 30 chr12 105323557 105323756 -15933774 + B4 SINE B4 10 215 -77 4 1388 450 0 0 0 chr12 105323816 105323866 -15933664 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1388 567 0 0 0 chr12 105323866 105323928 -15933602 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1388 392 304 81 63 chr12 105325366 105325702 -15931828 - MTEb LTR MaLR -9 370 4 4 1388 195 202 98 87 chr12 105325851 105325943 -15931587 + MIRc SINE MIR 84 176 -92 4 1388 2051 194 8 3 chr12 105327032 105327389 -15930141 + ORR1B2 LTR MaLR 1 359 -8 4 1388 209 243 105 26 chr12 105328062 105328138 -15929392 + L2 LINE L2 2827 2908 -511 4 1388 959 237 78 5 chr12 105328695 105328886 -15928644 + B4 SINE B4 88 292 0 4 1388 303 269 142 50 chr12 105328935 105329076 -15928454 + HAL1-3A_ME LINE L1 1975 2128 -730 4 1388 213 119 0 0 chr12 105329076 105329118 -15928412 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1388 394 289 37 52 chr12 105329153 105329288 -15928242 - MLT1C LTR MaLR -303 164 32 4 1388 456 51 0 0 chr12 105330634 105330693 -15926837 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1388 344 262 124 95 chr12 105330693 105331026 -15926504 - RMER17C-int LTR ERVK -486 2752 2592 4 1388 536 176 7 58 chr12 105331024 105331163 -15926367 - RLTR42-int LTR ERVK -3423 2099 1968 4 1388 9214 122 26 10 chr12 105331181 105333765 -15923765 + Lx4A LINE L1 4422 7056 -2 4 1388 341 223 27 72 chr12 105333776 105333887 -15923643 - RLTR42-int LTR ERVK -3547 1975 1870 4 1388 341 182 30 0 chr12 105334165 105334231 -15923299 - RLTR42-int LTR ERVK -3658 1864 1797 4 1388 410 222 221 26 chr12 105334371 105334526 -15923004 - RLTR42-int LTR ERVK -3739 1783 1546 4 1388 228 305 26 121 chr12 105335536 105335842 -15921688 - RMER10A LTR ERVL -25 417 141 4 1388 3059 191 83 58 chr12 105336772 105337606 -15919924 + RLTR13A LTR ERVK 1 855 0 4 1388 30 0 0 0 chr12 105337884 105337914 -15919616 + AT_rich Low_complexity Low_complexity 1 30 0 4 1388 408 40 0 0 chr12 105338273 105338323 -15919207 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1388 1241 175 89 11 chr12 105338405 105338676 -15918854 + RMER1C Other Other 1049 1340 -2 4 1388 318 260 0 59 chr12 105339530 105339632 -15917898 - RMER30 DNA MER1_type -34 168 73 4 1388 1548 185 73 41 chr12 105340805 105341148 -15916382 - ORR1D1 LTR MaLR -15 359 6 4 1388 454 217 12 18 chr12 105342125 105342294 -15915236 + (CATCC)n Simple_repeat Simple_repeat 3 170 0 4 1388 215 205 0 0 chr12 105342305 105342344 -15915186 + (CATCC)n Simple_repeat Simple_repeat 4 42 0 4 1388 340 348 0 21 chr12 105342389 105342530 -15915000 + (CATCC)n Simple_repeat Simple_repeat 1 138 0 4 1388 1817 222 192 41 chr12 105342562 105342656 -15914874 - RLTR40 LTR ERVK -140 677 573 4 1388 183 80 0 0 chr12 105342656 105342681 -15914849 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1388 1817 222 192 41 chr12 105342681 105342722 -15914808 - RLTR40 LTR ERVK -245 572 523 4 1388 264 30 0 0 chr12 105342722 105342755 -15914775 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1388 1817 222 192 41 chr12 105342755 105342791 -15914739 - RLTR40 LTR ERVK -295 522 485 4 1388 1110 95 0 0 chr12 105342791 105342938 -15914592 - B1_Mm SINE Alu 0 147 1 4 1388 1817 222 192 41 chr12 105342938 105343352 -15914178 - RLTR40 LTR ERVK -333 484 4 4 1388 232 297 48 29 chr12 105343762 105343866 -15913664 - MIR SINE MIR -80 128 23 4 1388 233 326 22 0 chr12 105344002 105344091 -15913439 + MIR3 SINE MIR 69 159 -49 4 1388 227 326 35 104 chr12 105344374 105344518 -15913012 - MTE2b LTR MaLR -230 149 16 4 1388 291 333 21 90 chr12 105344399 105344544 -15912986 - MT2A LTR ERVL -398 135 1 4 1388 570 82 0 0 chr12 105344585 105344670 -15912860 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1388 368 304 100 36 chr12 105344676 105344816 -15912714 - B3A SINE B2 -49 149 1 4 1388 313 60 0 123 chr12 105344818 105344862 -15912668 + B1_Mur4 SINE Alu 98 140 -10 4 1388 204 67 0 0 chr12 105344862 105344892 -15912638 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1388 313 60 0 123 chr12 105344892 105344904 -15912626 + B1_Mur4 SINE Alu 141 147 -3 4 1388 197 306 109 18 chr12 105344944 105345054 -15912476 - MIRb SINE MIR -18 250 131 4 1388 202 136 44 22 chr12 105346074 105346119 -15911411 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 4 1388 453 212 12 0 chr12 105347496 105347581 -15909949 + 5S rRNA rRNA 5 90 -31 4 1388 643 211 79 0 chr12 105348256 105348408 -15909122 + Lx2 LINE L1 6832 6995 -2 4 1388 404 277 202 6 chr12 105349698 105349876 -15907654 - MLT1F1 LTR MaLR -16 553 332 4 1388 789 67 0 0 chr12 105349877 105349981 -15907549 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 4 1388 320 253 12 37 chr12 105350023 105350105 -15907425 - ID4_ SINE ID 0 83 4 4 1388 328 250 24 12 chr12 105350233 105350318 -15907212 + MTEb LTR MaLR 294 379 0 4 1388 275 287 21 11 chr12 105350344 105350439 -15907091 + GA-rich Low_complexity Low_complexity 5 100 0 5 1388 229 196 70 18 chr12 105350470 105350527 -15907003 + B4A SINE B4 83 142 -150 5 1388 247 291 0 0 chr12 105350483 105350538 -15906992 + B1F1 SINE Alu 15 69 -80 5 1388 240 250 0 45 chr12 105351076 105351164 -15906366 - ORR1E LTR MaLR -2 377 294 5 1388 370 240 47 62 chr12 105351225 105351354 -15906176 - ORR1E LTR MaLR -232 127 1 5 1388 227 323 56 76 chr12 105351509 105351653 -15905877 + RMER5 LTR ERV1 10 150 -384 5 1388 378 276 18 47 chr12 105352990 105353204 -15904326 + C-rich Low_complexity Low_complexity 1 207 0 5 1388 180 256 30 140 chr12 105354465 105354565 -15902965 - L3 LINE CR1 -24 4465 4377 5 1388 2351 192 58 8 chr12 105358709 105359212 -15898318 - RLTR11A LTR ERVK 0 528 1 5 1388 325 231 15 21 chr12 105360130 105360223 -15897307 - MIR SINE MIR -105 157 72 5 1388 471 35 0 0 chr12 105360337 105360394 -15897136 + (TGG)n Simple_repeat Simple_repeat 3 59 0 5 1388 231 146 0 0 chr12 105360399 105360440 -15897090 + (GGA)n Simple_repeat Simple_repeat 2 42 0 5 1388 295 355 75 19 chr12 105362032 105362459 -15895071 + L1MB5 LINE L1 5619 6069 -105 5 1388 248 273 13 25 chr12 105362774 105362853 -15894677 + PB1D9 SINE Alu 42 119 -1 5 1388 208 382 38 0 chr12 105363285 105363416 -15894114 - L2a LINE L2 -298 3128 2993 5 1388 540 193 0 0 chr12 105363883 105363992 -15893538 + (TA)n Simple_repeat Simple_repeat 2 110 0 5 1388 1725 240 77 17 chr12 105365164 105365647 -15891883 - RMER5 LTR ERV1 0 534 23 5 1388 1141 75 7 0 chr12 105366366 105366512 -15891018 - B1_Mus2 SINE Alu 0 147 1 5 1388 307 339 0 39 chr12 105367104 105367282 -15890248 + C-rich Low_complexity Low_complexity 3 173 0 5 1388 224 352 105 62 chr12 105371706 105372076 -15885454 - L2a LINE L2 0 3426 3041 5 1388 1381 133 18 0 chr12 105373068 105373293 -15884237 - RLTR11A LTR ERVK 0 528 300 5 1388 6615 201 26 24 chr12 105373295 105374794 -15882736 - MYSERV16_I-int LTR ERVK -527 1799 298 5 1388 319 248 46 37 chr12 105374804 105374913 -15882617 - MYSERV-int LTR ERVK -2084 4466 4357 5 1388 194 0 0 37 chr12 105375116 105375143 -15882387 + (TTA)n Simple_repeat Simple_repeat 1 26 0 5 1388 183 100 0 0 chr12 105375542 105375572 -15881958 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1388 264 228 95 38 chr12 105375873 105375978 -15881552 + MYSERV16_I-int LTR ERVK 298 408 -1918 5 1388 2098 215 51 18 chr12 105376006 105376517 -15881013 - RLTR11A LTR ERVK 0 528 1 5 1388 207 100 0 0 chr12 105377978 105378008 -15879522 + (GGA)n Simple_repeat Simple_repeat 2 31 0 5 1388 250 357 21 14 chr12 105379613 105379755 -15877775 + L1MB7 LINE L1 5868 6010 -174 5 1388 214 339 46 0 chr12 105380270 105380335 -15877195 + B3A SINE B2 9 76 -122 5 1388 375 23 0 0 chr12 105380552 105380596 -15876934 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1388 621 0 0 0 chr12 105380596 105380664 -15876866 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 1388 327 96 0 0 chr12 105381417 105381469 -15876061 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 5 1389 5623 100 11 6 chr12 105381922 105382750 -15874780 + RLTR22_Mur LTR ERVK 1 832 -1016 5 1389 460 263 56 50 chr12 105382962 105383122 -15874408 + RMER12 LTR ERVK 1101 1261 -61 5 1389 287 304 17 42 chr12 105384524 105384644 -15872886 + MIR SINE MIR 77 193 -69 5 1389 253 242 55 100 chr12 105386596 105386706 -15870824 + L1MEc LINE L1 212 316 -6084 5 1389 734 191 38 11 chr12 105390815 105391287 -15866243 + GA-rich Low_complexity Low_complexity 1 484 0 5 1389 2413 158 51 45 chr12 105392442 105392454 -15865076 + L1_Mur2 LINE L1 4268 4285 -1592 5 1389 180 0 0 0 chr12 105392454 105392474 -15865056 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1389 2413 158 51 45 chr12 105392474 105392511 -15865019 + L1_Mur2 LINE L1 4286 4319 -1558 5 1389 2816 49 3 69 chr12 105392511 105392902 -15864628 - RLTR10B2 LTR ERVK 0 365 1 5 1389 2413 158 51 45 chr12 105392902 105393211 -15864319 + L1_Mur2 LINE L1 4320 4642 -1235 5 1389 2959 124 17 2 chr12 105393211 105393671 -15863859 + Lx2 LINE L1 6528 6994 -3 5 1389 2413 158 51 45 chr12 105393671 105393747 -15863783 + L1_Mur2 LINE L1 4643 4712 -1165 5 1389 1835 164 13 3 chr12 105393747 105394053 -15863477 - RLTR27 LTR ERVK 0 309 1 5 1389 2413 158 51 45 chr12 105394053 105394127 -15863403 + L1_Mur2 LINE L1 4713 4781 -1096 5 1389 311 306 10 0 chr12 105394641 105394739 -15862791 - MIR SINE MIR -87 175 77 5 1389 1595 219 34 3 chr12 105394780 105395133 -15862397 - MERVL_2A-int LTR ERVL -1491 4270 3907 5 1389 2256 223 36 25 chr12 105395125 105395648 -15861882 - MERVL_2A-int LTR ERVL -4208 1553 1024 5 1389 2181 181 22 12 chr12 105395648 105396061 -15861469 + MTC LTR MaLR 5 421 0 5 1389 2256 223 36 25 chr12 105396061 105396093 -15861437 - MERVL_2A-int LTR ERVL -4738 1023 992 5 1389 1431 253 25 0 chr12 105396118 105396485 -15861045 + RLTR14 LTR ERV1 7 382 0 5 1389 787 192 27 7 chr12 105396485 105396632 -15860898 - MERVL_2A-int LTR ERVL -4768 993 844 5 1389 298 114 39 59 chr12 105396655 105396757 -15860773 + (CAGAGA)n Simple_repeat Simple_repeat 5 104 0 5 1389 3069 213 54 17 chr12 105396762 105397336 -15860194 - MERVL_2A-int LTR ERVL -4902 859 260 5 1389 1580 194 54 19 chr12 105397336 105397520 -15860010 - ORR1C2 LTR MaLR -3 381 194 5 1389 713 12 12 0 chr12 105397520 105397606 -15859924 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 5 1389 1580 194 54 19 chr12 105397606 105397789 -15859741 - ORR1C2 LTR MaLR -191 193 1 5 1389 3069 213 54 17 chr12 105397789 105397878 -15859652 - MERVL_2A-int LTR ERVL -5502 259 171 5 1389 19832 175 41 13 chr12 105398100 105402542 -15854988 + L1VL4 LINE L1 737 5334 -966 5 1389 13262 163 41 12 chr12 105402549 105404723 -15852807 - L1_Mur2 LINE L1 -1602 4275 2062 5 1389 489 17 0 0 chr12 105404723 105404781 -15852749 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1389 13262 163 41 12 chr12 105404781 105405210 -15852320 - L1_Mur2 LINE L1 -3816 2061 1598 5 1389 3676 162 93 17 chr12 105405220 105405928 -15851602 - Lx3C LINE L1 -2 6974 6213 5 1389 2987 129 2 0 chr12 105405919 105406375 -15851155 + Lx3C LINE L1 5002 5458 -428 5 1389 332 91 0 0 chr12 105406373 105406417 -15851113 - Lx2 LINE L1 -179 6818 6775 5 1389 6284 108 22 5 chr12 105406416 105407313 -15850217 - Lx2 LINE L1 -353 6644 5732 5 1389 3085 176 24 8 chr12 105407274 105407864 -15849666 + Lx3C LINE L1 5653 6251 -725 5 1389 2264 169 93 14 chr12 105407858 105408611 -15848919 - L1_Mur2 LINE L1 -4264 1613 780 5 1389 2883 94 24 14 chr12 105408730 105409149 -15848381 + L1_Mus3 LINE L1 6212 6634 -4 5 1389 253 215 0 30 chr12 105410348 105410415 -15847115 + CT-rich Low_complexity Low_complexity 1 65 0 5 1389 273 128 0 0 chr12 105410415 105410462 -15847068 + (CAT)n Simple_repeat Simple_repeat 3 49 0 5 1389 349 217 33 0 chr12 105410639 105410731 -15846799 + MIR SINE MIR 77 171 -91 5 1389 207 333 21 0 chr12 105414809 105414902 -15842628 + CT-rich Low_complexity Low_complexity 5 99 0 5 1389 198 0 0 0 chr12 105415687 105415709 -15841821 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1389 275 301 16 54 chr12 105417459 105417645 -15839885 + GA-rich Low_complexity Low_complexity 2 180 0 5 1389 374 145 0 16 chr12 105418756 105418819 -15838711 - Lx4A LINE L1 -219 6839 6778 5 1389 954 154 12 6 chr12 105418821 105418991 -15838539 + Lx4A LINE L1 6600 6770 -288 5 1389 1924 235 39 20 chr12 105420196 105420704 -15836826 + RMER5 LTR ERV1 17 534 0 5 1389 501 17 0 0 chr12 105421008 105421066 -15836464 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1389 257 120 0 39 chr12 105421068 105421120 -15836410 + G-rich Low_complexity Low_complexity 6 55 0 5 1389 1783 205 76 10 chr12 105421282 105421677 -15835853 + MTC LTR MaLR 1 421 0 5 1389 810 211 0 0 chr12 105421790 105421970 -15835560 + CT-rich Low_complexity Low_complexity 1 180 0 5 1389 411 68 0 0 chr12 105421979 105422038 -15835492 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1389 576 244 0 0 chr12 105423782 105423962 -15833568 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1389 534 16 0 0 chr12 105423962 105424025 -15833505 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1389 246 339 83 41 chr12 105424562 105424990 -15832540 - L1MB5 LINE L1 -105 6069 5618 5 1389 198 150 0 0 chr12 105426555 105426595 -15830935 + (TCC)n Simple_repeat Simple_repeat 1 40 0 5 1389 264 304 33 0 chr12 105426813 105426905 -15830625 + MIR SINE MIR 77 171 -91 5 1389 182 372 30 30 chr12 105429034 105429167 -15828363 + L2a LINE L2 3294 3426 0 5 1389 376 301 11 46 chr12 105432159 105432333 -15825197 + G-rich Low_complexity Low_complexity 4 171 0 5 1389 1873 226 56 28 chr12 105433529 105434033 -15823497 + RMER5 LTR ERV1 17 534 0 5 1389 291 170 21 0 chr12 105434369 105434416 -15823114 + Lx5 LINE L1 6238 6285 -765 5 1389 348 283 0 11 chr12 105434413 105434506 -15823024 - Lx5 LINE L1 -177 6873 6782 5 1389 3752 203 39 11 chr12 105434523 105435251 -15822279 + Lx5 LINE L1 6303 7050 0 5 1389 1460 175 74 6 chr12 105435955 105436266 -15821264 + ORR1B2 LTR MaLR 2 333 -34 5 1389 1167 217 55 11 chr12 105437045 105437320 -15820210 - MTC LTR MaLR 0 421 135 5 1389 7001 127 53 13 chr12 105437321 105438710 -15818820 - Lx LINE L1 -209 6445 4926 5 1389 1162 82 0 0 chr12 105438710 105438856 -15818674 + B1_Mus2 SINE Alu 2 147 0 5 1389 7001 146 3 31 chr12 105438856 105439378 -15818152 - Lx LINE L1 -951 4932 4436 5 1389 201 171 0 24 chr12 105439720 105439762 -15817768 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1389 28047 38 1 10 chr12 105439820 105445531 -15811999 + L1Md_T LINE L1 1 5589 -297 5 1389 8661 31 0 0 chr12 105445531 105446527 -15811003 + L1Md_T LINE L1 5590 6585 0 5 1389 695 232 42 0 chr12 105446860 105447002 -15810528 - B1_Mur4 SINE Alu -2 148 1 5 1389 381 43 0 0 chr12 105447996 105448043 -15809487 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1389 453 76 0 0 chr12 105448827 105448893 -15808637 + (TGAA)n Simple_repeat Simple_repeat 1 66 0 5 1389 202 362 53 23 chr12 105449515 105449648 -15807882 - L2a LINE L2 -297 3129 2993 5 1389 2645 107 45 14 chr12 105449734 105450167 -15807363 + RMER16 LTR ERVK 1 533 0 5 1389 1742 212 63 10 chr12 105450501 105450897 -15806633 - MTC LTR MaLR -4 417 1 5 1389 220 184 0 0 chr12 105451154 105451192 -15806338 + C-rich Low_complexity Low_complexity 3 40 0 5 1389 318 312 105 35 chr12 105451192 105451335 -15806195 - HAL1-3A_ME LINE L1 -422 2436 2284 5 1389 219 214 0 0 chr12 105451341 105451383 -15806147 + C-rich Low_complexity Low_complexity 1 42 0 5 1389 2136 231 41 29 chr12 105451713 105452225 -15805305 - RMER5 LTR ERV1 0 534 17 5 1389 800 157 122 7 chr12 105453293 105453441 -15804089 - RLTR17 LTR ERVK -527 165 1 5 1389 252 329 11 34 chr12 105453900 105454076 -15803454 + C-rich Low_complexity Low_complexity 5 176 0 5 1389 289 304 33 0 chr12 105459437 105459529 -15798001 - MIR SINE MIR -91 171 77 5 1389 339 113 0 0 chr12 105459718 105459771 -15797759 + (TGG)n Simple_repeat Simple_repeat 1 53 0 5 1389 276 100 0 0 chr12 105459770 105459810 -15797720 + (GGA)n Simple_repeat Simple_repeat 2 41 0 5 1389 243 335 28 38 chr12 105461516 105461727 -15795803 + L1MB7 LINE L1 5865 6073 -111 6 1389 214 322 17 0 chr12 105462179 105462238 -15795292 + ID4_ SINE ID 4 63 -20 6 1389 197 277 0 10 chr12 105462285 105462387 -15795143 + (TA)n Simple_repeat Simple_repeat 2 102 0 6 1389 1523 287 43 44 chr12 105465202 105466006 -15791524 - ETnERV2-int LTR ERVK -1513 5893 5196 6 1389 269 186 0 0 chr12 105466005 105466048 -15791482 - ETnERV2-int LTR ERVK -2168 5238 5196 6 1389 529 250 0 9 chr12 105466089 105466202 -15791328 - ETnERV2-int LTR ERVK -2168 5238 5127 6 1389 226 233 0 0 chr12 105466203 105466246 -15791284 + RLTR13D3 LTR ERVK 1 43 -1071 6 1389 1285 206 64 4 chr12 105466269 105466518 -15791012 - ETnERV2-int LTR ERVK -2872 4534 4271 6 1389 21 0 0 0 chr12 105466553 105466574 -15790956 + AT_rich Low_complexity Low_complexity 1 21 0 6 1389 952 271 22 22 chr12 105468295 105468748 -15788782 - ETnERV2-int LTR ERVK -2740 3427 3042 6 1389 1028 180 23 44 chr12 105468778 105469003 -15788527 - ETnERV2-int LTR ERVK -2573 2833 2639 6 1389 432 118 0 0 chr12 105469764 105469832 -15787698 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1389 246 81 0 0 chr12 105470531 105470568 -15786962 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 6 1389 188 186 70 0 chr12 105470782 105470825 -15786705 - MIR SINE MIR -81 127 82 6 1389 3063 137 45 12 chr12 105471423 105471939 -15785591 + RMER16 LTR ERVK 1 533 0 6 1389 1583 236 69 5 chr12 105472296 105472688 -15784842 - MTC LTR MaLR -4 417 1 6 1389 870 10 0 0 chr12 105472946 105473045 -15784485 + (TC)n Simple_repeat Simple_repeat 2 100 0 6 1389 2204 223 48 20 chr12 105473370 105473874 -15783656 - RMER5 LTR ERV1 0 534 17 6 1389 329 296 11 50 chr12 105475183 105475364 -15782166 + C-rich Low_complexity Low_complexity 4 177 0 6 1389 372 207 44 0 chr12 105480260 105480347 -15777183 - MIR SINE MIR -105 157 72 6 1389 279 161 0 0 chr12 105480518 105480574 -15776956 + (ATGGTG)n Simple_repeat Simple_repeat 6 61 0 6 1389 282 116 0 0 chr12 105480572 105480615 -15776915 + (GGA)n Simple_repeat Simple_repeat 2 44 0 6 1389 5155 31 0 0 chr12 105482030 105482654 -15774876 + L1Md_T LINE L1 5996 6582 0 6 1389 507 17 0 0 chr12 105482757 105482817 -15774713 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1389 241 321 0 19 chr12 105482828 105482936 -15774594 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 1389 279 71 0 0 chr12 105484028 105484070 -15773460 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1389 212 147 0 0 chr12 105484758 105484792 -15772738 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 6 1389 192 213 64 0 chr12 105484989 105485050 -15772480 - MIRc SINE MIR -63 145 82 6 1389 561 209 6 81 chr12 105485393 105485554 -15771976 - RMER5 LTR ERV1 -366 168 20 6 1389 1490 139 142 4 chr12 105486860 105487141 -15770389 + IAPEY3_LTR LTR ERVK 1 320 -12 6 1389 313 321 12 25 chr12 105487150 105487313 -15770217 + CT-rich Low_complexity Low_complexity 1 161 0 6 1389 191 313 45 0 chr12 105488106 105488173 -15769357 + MIRc SINE MIR 89 158 -110 6 1389 188 311 80 95 chr12 105490326 105490589 -15766941 - L2a LINE L2 -2 3424 3166 6 1389 383 239 33 0 chr12 105492715 105492807 -15764723 - MIR SINE MIR -91 171 77 6 1389 183 184 0 0 chr12 105492994 105493032 -15764498 + (TGG)n Simple_repeat Simple_repeat 1 38 0 6 1389 209 189 0 0 chr12 105493037 105493074 -15764456 + GA-rich Low_complexity Low_complexity 2 38 0 6 1389 248 344 19 31 chr12 105494790 105495001 -15762529 + L1MB5 LINE L1 5865 6073 -111 6 1389 1034 72 58 0 chr12 105495499 105495638 -15761892 + B1_Mus2 SINE Alu 1 147 0 6 1389 551 212 0 77 chr12 105495703 105495897 -15761633 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1389 195 350 29 20 chr12 105498203 105498305 -15759225 - L2b LINE L2 -323 3052 2950 6 1389 2486 138 47 68 chr12 105498378 105498851 -15758679 + RMER16 LTR ERVK 71 533 0 6 1389 1781 220 50 5 chr12 105499205 105499603 -15757927 - MTC LTR MaLR -4 417 2 6 1389 780 59 0 0 chr12 105499855 105499957 -15757573 + (TC)n Simple_repeat Simple_repeat 1 102 0 6 1389 1774 244 52 18 chr12 105500283 105500784 -15756746 - RMER5 LTR ERV1 0 534 17 1 1389 212 304 6 86 chr12 105502108 105502270 -15755260 + C-rich Low_complexity Low_complexity 4 152 0 2 1389 208 257 67 13 chr12 105507691 105507766 -15749764 - MIR SINE MIR -107 155 77 3 1389 249 139 0 0 chr12 105507960 105508003 -15749527 + (TGG)n Simple_repeat Simple_repeat 1 43 0 4 1389 225 132 0 0 chr12 105508005 105508043 -15749487 + (GGA)n Simple_repeat Simple_repeat 1 38 0 5 1389 1024 188 129 58 chr12 105510201 105510511 -15747019 - IAPEY3_LTR LTR ERVK 0 332 1 6 1389 495 0 0 0 chr12 105510826 105510881 -15746649 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1389 199 241 0 24 chr12 105510934 105511019 -15746511 + (TA)n Simple_repeat Simple_repeat 2 84 0 8 1389 452 59 15 0 chr12 105512069 105512137 -15745393 + (CA)n Simple_repeat Simple_repeat 1 69 0 9 1389 324 94 0 0 chr12 105512827 105512880 -15744650 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 1 1390 5369 320 56 38 chr12 105513061 105517208 -15740322 - RNERVK23-int LTR ERVK -2434 5783 1236 1 1390 427 45 15 15 chr12 105517669 105517736 -15739794 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 1 1390 722 307 18 27 chr12 105518229 105518557 -15738973 - RNERVK23-int LTR ERVK -7703 514 190 1 1390 444 217 43 37 chr12 105518722 105518885 -15738645 - RLTR43A LTR ERVK 0 364 201 1 1390 1389 111 14 9 chr12 105519133 105519335 -15738195 - RMER16-int LTR ERVK -1332 4074 3872 1 1390 2331 104 0 0 chr12 105519335 105519644 -15737886 - RLTR27 LTR ERVK 0 309 1 1 1390 1543 274 48 48 chr12 105519644 105520982 -15736548 - MMERVK10C-int LTR ERVK 0 7581 6137 1 1390 331 336 4 55 chr12 105521385 105521621 -15735909 - MMERVK10C-int LTR ERVK -1851 5730 5507 1 1390 847 172 0 0 chr12 105521688 105521833 -15735697 - RLTR27 LTR ERVK -164 145 1 1 1390 10213 139 70 30 chr12 105521833 105522822 -15734708 - RMER16-int LTR ERVK -1529 3877 2862 1 1390 394 102 14 14 chr12 105522822 105522892 -15734638 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1390 10213 139 70 30 chr12 105522892 105523755 -15733775 - RMER16-int LTR ERVK -2545 2861 1952 1 1390 230 0 33 0 chr12 105523757 105523787 -15733743 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1390 5498 160 58 7 chr12 105523811 105524923 -15732607 - MusHAL1 LINE L1 -1495 1217 49 2 1390 8087 63 3 0 chr12 105524930 105526217 -15731313 - L1Md_F2 LINE L1 0 6582 5292 2 1390 3614 213 46 56 chr12 105526225 105527203 -15730327 - ETnERV2-int LTR ERVK -4390 3016 1417 2 1390 4837 161 65 39 chr12 105527306 105528369 -15729161 - ETnERV2-int LTR ERVK -5215 2191 1101 2 1390 225 94 0 0 chr12 105528375 105528407 -15729123 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 2 1390 229 192 0 0 chr12 105528431 105528483 -15729047 + T-rich Low_complexity Low_complexity 3 54 0 2 1390 7400 85 9 0 chr12 105528513 105529519 -15728011 - L1_Mus1 LINE L1 0 6567 5555 2 1390 1179 167 5 5 chr12 105529508 105529713 -15727817 + L1Md_A LINE L1 700 904 -5820 2 1390 5127 53 0 0 chr12 105529715 105530341 -15727189 - L1_Mm LINE L1 -852 5031 4406 2 1390 1532 152 4 33 chr12 105530337 105530609 -15726921 - L1VL1 LINE L1 -6158 264 1 2 1390 599 224 6 0 chr12 105531952 105532126 -15725404 + (TA)n Simple_repeat Simple_repeat 1 175 0 3 1390 8105 2 0 0 chr12 105532939 105533817 -15723713 + L1Md_A LINE L1 5705 6582 0 3 1390 450 0 0 0 chr12 105534088 105534138 -15723392 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1390 210 245 0 0 chr12 105534832 105534885 -15722645 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 3 1390 351 0 0 0 chr12 105536673 105536712 -15720818 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1390 300 70 0 0 chr12 105536718 105536761 -15720769 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1390 1988 198 28 31 chr12 105536862 105537284 -15720246 - MTC LTR MaLR 0 421 1 3 1390 209 232 18 18 chr12 105537435 105537492 -15720038 + CT-rich Low_complexity Low_complexity 2 58 0 3 1390 486 0 0 0 chr12 105537503 105537557 -15719973 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1390 1816 237 67 10 chr12 105537877 105538367 -15719163 - RMER5 LTR ERV1 0 534 17 3 1390 516 152 0 0 chr12 105540402 105540419 -15717111 + polypurine Low_complexity Low_complexity 2 18 0 4 1390 405 0 0 0 chr12 105540419 105540464 -15717066 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1390 516 152 0 0 chr12 105540464 105540571 -15716959 + GA-rich Low_complexity Low_complexity 19 125 0 4 1390 1566 202 130 13 chr12 105540672 105541049 -15716481 - MTC LTR MaLR 0 421 1 4 1390 666 68 0 0 chr12 105541202 105541290 -15716240 + (TC)n Simple_repeat Simple_repeat 2 89 0 4 1390 318 50 0 0 chr12 105541290 105541329 -15716201 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1390 1827 228 48 20 chr12 105541629 105542130 -15715400 - RMER5 LTR ERV1 0 534 20 4 1390 1251 115 0 0 chr12 105543330 105543504 -15714026 - Lx4A LINE L1 -288 6770 6597 4 1390 422 143 0 0 chr12 105543502 105543565 -15713965 + Lx4A LINE L1 6777 6839 -219 4 1390 204 208 0 0 chr12 105544813 105544861 -15712669 + A-rich Low_complexity Low_complexity 1 48 0 4 1390 2494 102 11 6 chr12 105545028 105545383 -15712147 - IAPEY2_LTR LTR ERVK 0 357 1 4 1390 5629 94 6 8 chr12 105545383 105546163 -15711367 - IAPEy-int LTR ERVK 0 7513 6735 4 1390 3676 71 2 4 chr12 105546152 105546619 -15710911 - IAPEy-int LTR ERVK -1366 6215 5750 4 1390 3352 99 0 16 chr12 105546597 105547047 -15710483 - IAPEy-int LTR ERVK -1936 5645 5203 4 1390 620 61 47 66 chr12 105547308 105547414 -15710116 - IAPEy-int LTR ERVK -2911 4670 4567 4 1390 439 103 0 0 chr12 105547411 105547469 -15710061 - IAPEy-int LTR ERVK -3782 3624 3567 4 1390 661 244 374 25 chr12 105547495 105547717 -15709813 - IAPEy-int LTR ERVK -4653 2753 2454 4 1390 479 212 88 0 chr12 105547730 105547843 -15709687 - RMER16-int LTR ERVK -5077 1060 938 5 1390 1509 193 113 51 chr12 105547848 105548321 -15709209 - RMER16-int LTR ERVK -4750 656 250 5 1390 944 147 173 26 chr12 105548432 105548849 -15708681 - IAPEy-int LTR ERVK -6629 952 407 5 1390 2524 123 0 102 chr12 105549278 105549759 -15707771 - IAPEy-int LTR ERVK -7081 432 1 5 1390 1860 132 0 7 chr12 105549759 105550063 -15707467 - IAPEY2_LTR LTR ERVK 0 357 56 5 1390 8193 33 1 5 chr12 105550063 105551388 -15706142 - L1Md_F2 LINE L1 -13 6569 5252 5 1390 247 95 95 0 chr12 105551388 105551430 -15706100 - IAPEY2_LTR LTR ERVK -311 46 1 5 1390 215 282 11 69 chr12 105551432 105551607 -15705923 + CT-rich Low_complexity Low_complexity 3 167 0 5 1390 2971 78 22 5 chr12 105551873 105552273 -15705257 - MTB_Mm LTR MaLR 0 407 1 5 1390 315 177 129 31 chr12 105554422 105554585 -15702945 + (CAGGA)n Simple_repeat Simple_repeat 2 180 0 5 1390 374 303 0 54 chr12 105554545 105554730 -15702800 + GA-rich Low_complexity Low_complexity 4 178 0 5 1390 192 340 125 34 chr12 105556152 105556472 -15701058 - L2a LINE L2 -31 3395 3047 5 1390 350 0 44 0 chr12 105557682 105557727 -15699803 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1390 319 242 33 11 chr12 105558901 105558993 -15698537 - MIR SINE MIR -92 170 77 5 1390 390 312 104 46 chr12 105560645 105561078 -15696452 + L1MB7 LINE L1 5619 6076 -104 6 1390 396 59 0 0 chr12 105561839 105561890 -15695640 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 6 1390 711 218 0 0 chr12 105561892 105562025 -15695505 - B1_Mus1 SINE Alu -15 133 1 6 1390 305 236 0 60 chr12 105562090 105562192 -15695338 + (TA)n Simple_repeat Simple_repeat 1 99 0 6 1390 3213 142 77 9 chr12 105562192 105562753 -15694777 - MT2B LTR ERVL 0 601 3 6 1390 305 236 0 60 chr12 105562753 105562767 -15694763 + (TA)n Simple_repeat Simple_repeat 2 12 0 6 1390 600 252 47 0 chr12 105562771 105562898 -15694632 + ETnERV2-int LTR ERVK 7070 7202 -204 6 1390 431 214 0 8 chr12 105563280 105563412 -15694118 + (TA)n Simple_repeat Simple_repeat 1 131 0 6 1390 2073 160 47 11 chr12 105563422 105563802 -15693728 - ORR1B1 LTR MaLR 0 394 1 6 1390 322 74 0 36 chr12 105563877 105563933 -15693597 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1390 881 240 73 12 chr12 105564583 105564828 -15692702 + L1_Mur2 LINE L1 817 1076 -6010 7 1390 1810 136 25 3 chr12 105564824 105565141 -15692389 + L1_Mur2 LINE L1 1289 1612 -4265 7 1390 3027 182 41 32 chr12 105565138 105565209 -15692321 - Lx2B LINE L1 -754 6246 6174 7 1390 714 24 0 0 chr12 105565209 105565293 -15692237 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 1390 5039 174 34 28 chr12 105565293 105565663 -15691867 - Lx2B LINE L1 -827 6173 5786 7 1390 1118 90 7 0 chr12 105565663 105565808 -15691722 - B1_Mus2 SINE Alu 0 147 2 7 1390 5039 151 14 17 chr12 105565808 105566602 -15690928 - Lx2B LINE L1 -98 5788 5002 7 1390 1759 182 11 34 chr12 105566606 105566964 -15690566 + Lx3C LINE L1 6231 6580 -396 7 1390 4607 173 15 5 chr12 105566958 105567811 -15689719 + L1_Mur2 LINE L1 3423 4284 -1593 7 1390 3420 166 23 2 chr12 105567838 105568452 -15689078 - L1VL4 LINE L1 -592 5294 4668 7 1390 6808 175 23 16 chr12 105568437 105570139 -15687391 - L1VL4 LINE L1 -1404 2510 802 7 1390 541 161 0 0 chr12 105570233 105570326 -15687204 + MERVL_2A-int LTR ERVL 171 263 -5498 7 1390 1626 174 34 119 chr12 105570328 105570739 -15686791 + ORR1C2 LTR MaLR 7 382 -2 7 1390 2721 191 50 11 chr12 105570742 105571287 -15686243 + MERVL_2A-int LTR ERVL 255 820 -4941 7 1390 1344 235 11 69 chr12 105571287 105571662 -15685868 - RLTR14 LTR ERV1 -25 357 5 7 1390 988 214 39 68 chr12 105571685 105571717 -15685813 + MERVL_2A-int LTR ERVL 992 1020 -4741 7 1390 1991 185 55 8 chr12 105571717 105572115 -15685415 - MTC LTR MaLR 0 421 5 7 1390 3089 248 62 29 chr12 105572115 105573355 -15684175 + MERVL_2A-int LTR ERVL 1021 2382 -3379 7 1390 990 131 13 0 chr12 105573366 105573519 -15684011 + MERVL_2A-int LTR ERVL 3071 3225 -2536 7 1390 288 0 0 0 chr12 105573745 105573777 -15683753 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 1390 3381 243 31 9 chr12 105573966 105574779 -15682751 + MERVL_2A-int LTR ERVL 3463 4293 -1468 7 1390 268 298 11 11 chr12 105574815 105574910 -15682620 + MIR SINE MIR 77 171 -91 8 1390 2702 170 36 9 chr12 105575412 105575940 -15681590 - L1_Mur2 LINE L1 -1076 4801 4260 8 1390 3313 46 2 0 chr12 105575998 105576393 -15681137 - MTA_Mm LTR MaLR 0 396 1 8 1390 217 361 6 28 chr12 105577435 105577617 -15679913 + CT-rich Low_complexity Low_complexity 2 179 0 8 1390 230 174 52 29 chr12 105577628 105577764 -15679766 + CT-rich Low_complexity Low_complexity 3 141 0 8 1390 195 325 12 12 chr12 105584470 105584551 -15672979 - MIR SINE MIR -105 157 77 8 1390 19833 78 3 1 chr12 105586099 105586364 -15671166 + L1Md_A LINE L1 2914 3177 -2706 8 1390 486 0 0 0 chr12 105586364 105586418 -15671112 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 8 1390 19833 78 3 1 chr12 105586418 105588819 -15668711 + L1Md_A LINE L1 3178 5585 -298 8 1390 8339 34 15 1 chr12 105588819 105589800 -15667730 + L1Md_A LINE L1 5587 6581 -1 8 1390 378 0 0 0 chr12 105590708 105590750 -15666780 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1390 634 243 108 0 chr12 105593139 105593324 -15664206 - RMER5 LTR ERV1 -206 328 124 8 1390 618 292 35 42 chr12 105593393 105593679 -15663851 - RLTR15 LTR ERVK -75 284 1 9 1390 371 294 36 42 chr12 105593679 105593796 -15663734 - RMER5 LTR ERV1 -398 136 21 9 1390 260 312 17 28 chr12 105595094 105595275 -15662255 + CT-rich Low_complexity Low_complexity 1 179 0 9 1390 206 140 130 74 chr12 105597835 105597943 -15659587 + (CAGGA)n Simple_repeat Simple_repeat 2 115 0 9 1390 2301 209 41 12 chr12 105600715 105601228 -15656302 - RLTR11A LTR ERVK 0 528 1 9 1390 282 286 22 0 chr12 105602141 105602232 -15655298 - MIR SINE MIR -92 170 78 9 1390 201 39 0 0 chr12 105602400 105602426 -15655104 + (TGG)n Simple_repeat Simple_repeat 1 26 0 9 1390 369 229 0 0 chr12 105602430 105602535 -15654995 + GA-rich Low_complexity Low_complexity 2 106 0 9 1390 189 94 0 0 chr12 105603084 105603116 -15654414 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1390 434 49 16 0 chr12 105603111 105603172 -15654358 + (GA)n Simple_repeat Simple_repeat 2 63 0 9 1390 3158 82 0 0 chr12 105603553 105603953 -15653577 + MTB LTR MaLR 1 400 0 1 1390 249 349 27 7 chr12 105604813 105604963 -15652567 + L1MB7 LINE L1 5872 6024 -160 1 1390 495 0 0 0 chr12 105605990 105606045 -15651485 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 1 1390 669 226 0 0 chr12 105606047 105606180 -15651350 - B1_Mus1 SINE Alu -15 133 1 1 1390 276 172 0 0 chr12 105606259 105606317 -15651213 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1390 444 208 6 13 chr12 105606345 105606377 -15651153 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1390 3407 160 43 15 chr12 105606377 105606962 -15650568 - MT2B LTR ERVL 0 601 1 1 1390 444 208 6 13 chr12 105606962 105607085 -15650445 + (TA)n Simple_repeat Simple_repeat 2 124 0 1 1390 1315 204 71 21 chr12 105607122 105607458 -15650072 - ORR1B1 LTR MaLR -32 362 10 1 1390 570 188 0 8 chr12 105607484 105607737 -15649793 + (TA)n Simple_repeat Simple_repeat 1 251 0 1 1390 2210 146 113 7 chr12 105608380 105609074 -15648456 + L1_Mur2 LINE L1 817 1612 -4265 1 1390 1705 191 12 0 chr12 105609076 105609416 -15648114 - Lx3C LINE L1 -732 6244 5901 1 1390 1430 153 8 0 chr12 105609404 105609659 -15647871 - L1_Mur1 LINE L1 -628 5258 5002 1 1390 3631 164 8 31 chr12 105609658 105610293 -15647237 + Lx3C LINE L1 6226 6845 -131 1 1390 7449 116 5 9 chr12 105610354 105611775 -15645755 + L1_Mus4 LINE L1 5153 6564 -72 1 1390 270 0 0 0 chr12 105611775 105611805 -15645725 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1390 7449 100 6 12 chr12 105611805 105611872 -15645658 + L1_Mus4 LINE L1 6565 6634 -2 1 1390 7200 156 46 1 chr12 105611868 105613180 -15644350 + L1_Mur2 LINE L1 3916 5285 -592 1 1390 1157 56 50 6 chr12 105613205 105613366 -15644164 + B2_Mm1t SINE B2 7 174 -19 1 1390 7432 168 58 14 chr12 105613378 105614030 -15643500 - L1_Mur2 LINE L1 -1593 4284 3581 1 1390 195 42 0 0 chr12 105614030 105614054 -15643476 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1390 7432 168 58 14 chr12 105614054 105614898 -15642632 - L1_Mur2 LINE L1 -2297 3580 2720 1 1390 180 0 0 0 chr12 105614898 105614918 -15642612 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1390 7432 168 58 14 chr12 105614918 105614961 -15642569 - L1_Mur2 LINE L1 -3158 2719 2677 1 1390 1320 156 19 4 chr12 105614965 105615223 -15642307 - L1_Mur2 LINE L1 -2144 3733 3472 1 1390 779 189 13 7 chr12 105615235 105615389 -15642141 + RLTR31_Mm LTR ERVK 1 155 -406 1 1390 2837 89 12 34 chr12 105615389 105615806 -15641724 + RLTR9E LTR ERVK 2 409 0 1 1390 982 230 142 60 chr12 105615807 105616158 -15641372 + ETnERV2-int LTR ERVK 2 381 -2933 1 1390 3083 182 115 73 chr12 105616174 105617149 -15640381 + ETnERV2-int LTR ERVK 1071 2086 -5320 1 1390 5514 130 47 22 chr12 105617173 105618129 -15639401 + ETnERV2-int LTR ERVK 1995 3448 -3958 1 1390 2905 111 26 5 chr12 105618353 105618810 -15638720 + ETnERV2-int LTR ERVK 3441 3897 -3509 1 1390 2039 177 11 101 chr12 105618795 105619596 -15637934 + ETnERV2-int LTR ERVK 2696 3141 -1703 1 1390 369 0 0 0 chr12 105619596 105619637 -15637893 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1390 1675 128 12 182 chr12 105619637 105619770 -15637760 + ETnERV2-int LTR ERVK 6310 6429 -977 1 1390 286 156 0 59 chr12 105619866 105619934 -15637596 + RLTR45-int LTR ERVK 6009 6072 -1172 1 1390 1618 125 16 8 chr12 105619947 105620197 -15637333 + ETnERV3-int LTR ERVK 5529 5780 -28 1 1390 2430 193 93 2 chr12 105620208 105620702 -15636828 + RLTR13D6 LTR ERVK 1 539 -363 1 1390 476 0 0 0 chr12 105620702 105620754 -15636776 + ETnERV2-int LTR ERVK 7331 7382 -24 1 1390 1753 137 11 11 chr12 105620764 105620781 -15636749 + RLTR31_Mm LTR ERVK 134 149 -412 1 1390 2589 114 17 27 chr12 105620781 105621194 -15636336 + RLTR9E LTR ERVK 1 409 0 1 1390 1753 180 50 31 chr12 105621194 105621633 -15635897 + RLTR31_Mm LTR ERVK 124 686 -6 1 1390 3586 162 21 16 chr12 105621637 105622341 -15635189 - MusHAL1 LINE L1 -436 2276 1569 1 1390 409 139 28 0 chr12 105622341 105622413 -15635117 + MERVL_2A-int LTR ERVL 2309 2382 -3379 1 1390 802 189 14 0 chr12 105622422 105622565 -15634965 + MERVL_2A-int LTR ERVL 3069 3213 -2548 1 1390 3819 240 12 6 chr12 105622986 105623830 -15633700 + MERVL_2A-int LTR ERVL 3445 4293 -1468 1 1390 340 272 22 0 chr12 105623866 105623958 -15633572 + MIR SINE MIR 78 171 -91 1 1390 2586 150 32 89 chr12 105624460 105625024 -15632506 - L1_Mur2 LINE L1 -1076 4801 4270 1 1390 314 275 92 72 chr12 105626068 105626221 -15631309 - HAL1-3A_ME LINE L1 -419 2439 2284 1 1390 279 170 50 10 chr12 105626221 105626322 -15631208 + CT-rich Low_complexity Low_complexity 2 106 0 1 1390 181 287 20 121 chr12 105626571 105626670 -15630860 - MIRm SINE MIR -151 125 37 1 1390 187 329 60 24 chr12 105626870 105626954 -15630576 + L3b LINE CR1 51 137 -345 1 1390 182 226 17 117 chr12 105627565 105627625 -15629905 - L3 LINE CR1 -24 4465 4412 1 1390 309 316 139 42 chr12 105630330 105630660 -15626870 - L2a LINE L2 -24 3402 3041 1 1390 361 326 21 14 chr12 105633128 105633268 -15624262 - MIR SINE MIR -91 171 31 1 1390 2340 151 58 34 chr12 105634757 105635378 -15622152 - RLTR13D3 LTR ERVK 0 1114 332 1 1390 754 314 71 32 chr12 105635788 105636068 -15621462 + B4 SINE B4 2 292 0 1 1390 219 254 75 0 chr12 105636127 105636194 -15621336 + B2_Mm2 SINE B2 2 73 -122 1 1390 2621 191 81 1 chr12 105636379 105637206 -15620324 - MERVL_2A-int LTR ERVL -1416 4345 3453 1 1390 908 143 14 0 chr12 105637597 105637737 -15619793 - MERVL_2A-int LTR ERVL -2549 3212 3071 1 1390 2009 162 55 3 chr12 105637748 105638112 -15619418 - MERVL_2A-int LTR ERVL -3379 2382 2000 1 1390 973 268 535 8 chr12 105638222 105638345 -15619185 - RMER4B LTR ERVK -140 445 259 1 1390 195 42 0 0 chr12 105638345 105638369 -15619161 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1 1390 973 210 100 33 chr12 105638369 105638609 -15618921 - RMER4B LTR ERVK -327 258 1 1 1390 4821 171 41 34 chr12 105638613 105639587 -15617943 - MERVL_2A-int LTR ERVL -3760 2001 1021 1 1390 2305 170 5 28 chr12 105639593 105639993 -15617537 + MTC LTR MaLR 5 395 -26 1 1390 1973 196 22 5 chr12 105640015 105640385 -15617145 + RLTR14 LTR ERV1 7 382 0 1 1390 1458 181 27 61 chr12 105640387 105640553 -15616977 - MERVL_2A-int LTR ERVL -4770 991 830 1 1390 3436 101 279 19 chr12 105640553 105641138 -15616392 + RMER19A LTR ERVK 1 737 0 1 1390 1458 181 27 61 chr12 105641138 105641266 -15616264 - MERVL_2A-int LTR ERVL -4932 829 707 1 1390 721 205 6 43 chr12 105641266 105641468 -15616062 + ORR1C2 LTR MaLR 146 384 0 1 1390 1065 171 16 5 chr12 105642746 105642934 -15614596 - B2_Mm2 SINE B2 -4 191 2 1 1390 22 0 0 0 chr12 105643026 105643048 -15614482 + GC_rich Low_complexity Low_complexity 1 22 0 1 1391 1326 75 40 0 chr12 105644126 105644300 -15613230 + B2_Mm2 SINE B2 1 181 -14 1 1391 291 114 0 0 chr12 105644306 105644350 -15613180 + (GGA)n Simple_repeat Simple_repeat 3 46 0 1 1391 296 265 22 36 chr12 105645705 105645842 -15611688 + CT-rich Low_complexity Low_complexity 2 136 0 1 1391 181 233 70 0 chr12 105647045 105647088 -15610442 + L3 LINE CR1 2355 2400 -2089 1 1391 205 75 209 0 chr12 105648511 105648578 -15608952 + (CAGGA)n Simple_repeat Simple_repeat 5 85 0 1 1391 186 148 0 0 chr12 105649996 105650023 -15607507 - L2b LINE L2 -25 3350 3324 1 1391 368 209 81 3 chr12 105652648 105652757 -15604773 - MIR SINE MIR -104 158 36 1 1391 450 36 0 0 chr12 105653120 105653176 -15604354 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1391 368 294 86 51 chr12 105653698 105654128 -15603402 + L1MB5 LINE L1 5619 6070 -104 1 1391 247 196 0 19 chr12 105654539 105654591 -15602939 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1391 315 0 0 0 chr12 105654892 105654927 -15602603 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 1391 413 62 0 15 chr12 105654942 105655008 -15602522 + (TTG)n Simple_repeat Simple_repeat 2 66 0 1 1391 592 121 66 0 chr12 105655008 105655099 -15602431 - B1_Mur4 SINE Alu -11 139 43 1 1391 324 0 0 161 chr12 105655102 105655270 -15602260 + (CTCTG)n Simple_repeat Simple_repeat 5 145 0 1 1391 258 217 0 91 chr12 105655271 105655337 -15602193 - B1_Mus1 SINE Alu -88 60 1 1 1391 236 261 0 0 chr12 105656413 105656459 -15601071 - L3 LINE CR1 -109 4380 4335 1 1391 209 179 0 0 chr12 105656782 105656821 -15600709 + (CGGGG)n Simple_repeat Simple_repeat 1 39 0 1 1391 243 314 19 0 chr12 105657116 105657221 -15600309 - PB1D10 SINE Alu -8 109 3 1 1391 404 292 36 53 chr12 105657234 105657378 -15600152 - RSINE1 SINE B4 0 292 78 1 1391 357 326 30 0 chr12 105658177 105658309 -15599221 - MER5A1 DNA MER1_type -27 139 4 1 1391 256 274 90 41 chr12 105658474 105658596 -15598934 + RMER15 LTR ERVL 57 184 -391 1 1391 616 319 93 20 chr12 105658595 105658841 -15598689 + RMER15 LTR ERVL 312 575 0 1 1391 1997 249 102 44 chr12 105659026 105659435 -15598095 + RMER15-int LTR ERVL 225 650 -4349 1 1391 716 230 196 6 chr12 105659435 105659614 -15597916 - B3 SINE B2 0 216 4 1 1391 1997 249 102 44 chr12 105659614 105659863 -15597667 + RMER15-int LTR ERVL 651 921 -4078 1 1391 384 190 0 0 chr12 105659904 105659983 -15597547 + GA-rich Low_complexity Low_complexity 1 79 0 1 1391 815 132 16 0 chr12 105659983 105660104 -15597426 - RSINE1 SINE B4 -39 126 4 1 1391 2840 295 58 63 chr12 105660115 105661346 -15596184 + RMER15-int LTR ERVL 939 2163 -2836 1 1391 289 179 179 0 chr12 105661518 105661596 -15595934 + RMER15-int LTR ERVL 2295 2386 -2613 1 1391 2007 269 24 27 chr12 105661641 105662188 -15595342 + RMER15-int LTR ERVL 4147 4691 -308 1 1391 492 276 27 20 chr12 105662392 105662540 -15594990 + B1F2 SINE Alu 1 149 0 1 1391 557 211 35 0 chr12 105662543 105662657 -15594873 + ID_B1 SINE B4 107 224 0 1 1391 636 225 0 0 chr12 105663478 105663638 -15593892 + (CA)n Simple_repeat Simple_repeat 1 160 0 1 1391 762 299 38 24 chr12 105664322 105664610 -15592920 + B4A SINE B4 1 292 0 1 1391 829 243 162 0 chr12 105665065 105665287 -15592243 - ORR1D2 LTR MaLR -109 261 4 1 1391 356 40 20 0 chr12 105665802 105665852 -15591678 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1391 887 141 30 0 chr12 105665852 105665987 -15591543 - B1_Mur4 SINE Alu -10 140 2 1 1391 687 238 88 16 chr12 105666012 105666204 -15591326 - B3 SINE B2 -6 210 5 1 1391 1934 43 17 0 chr12 105666214 105666445 -15591085 + L1Md_F2 LINE L1 5352 5586 -297 1 1391 7486 67 25 6 chr12 105666446 105667411 -15590119 + L1Md_F2 LINE L1 5588 6570 -12 1 1391 207 0 0 0 chr12 105667413 105667436 -15590094 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1391 324 270 0 0 chr12 105668526 105668600 -15588930 - ID4_ SINE ID -9 74 1 1 1391 485 362 40 51 chr12 105668680 105668933 -15588597 + B4A SINE B4 39 288 -4 1 1391 477 34 0 0 chr12 105668953 105669012 -15588518 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1391 483 258 25 8 chr12 105669012 105669133 -15588397 - B1F SINE Alu -9 140 18 1 1391 560 241 77 81 chr12 105670832 105671053 -15586477 - ID_B1 SINE B4 0 224 5 1 1391 335 256 7 123 chr12 105671725 105671863 -15585667 - Tigger7 DNA MER2_type 0 2491 2370 1 1391 333 0 0 0 chr12 105671916 105671953 -15585577 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1391 239 143 41 0 chr12 105672749 105672798 -15584732 + G-rich Low_complexity Low_complexity 6 56 0 1 1391 1040 266 43 36 chr12 105672822 105673043 -15584487 + B4A SINE B4 1 215 -77 1 1391 603 0 0 0 chr12 105673043 105673110 -15584420 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 1 1391 1040 266 43 36 chr12 105673110 105673169 -15584361 + B4A SINE B4 216 282 -10 1 1391 369 0 0 0 chr12 105673185 105673226 -15584304 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1391 301 322 74 83 chr12 105673314 105673531 -15583999 - MLT1K LTR MaLR 0 595 298 1 1391 645 257 113 16 chr12 105674571 105674757 -15582773 - ID_B1 SINE B4 -20 204 1 1 1391 371 277 181 42 chr12 105675255 105675421 -15582109 - B3A SINE B2 -8 190 2 1 1391 270 288 0 165 chr12 105675476 105675609 -15581921 + MT2B LTR ERVL 150 260 -341 1 1391 704 218 15 0 chr12 105675508 105675641 -15581889 + B1_Mur1 SINE Alu 5 139 -10 1 1391 1092 101 0 0 chr12 105675641 105675872 -15581658 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 2 1391 377 174 0 0 chr12 105677351 105677420 -15580110 - B4 SINE B4 -222 70 2 2 1391 333 0 0 0 chr12 105678008 105678045 -15579485 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 2 1391 29 47 0 0 chr12 105678048 105678091 -15579439 + AT_rich Low_complexity Low_complexity 1 43 0 2 1391 219 321 24 6 chr12 105678156 105678259 -15579271 - MIR SINE MIR -59 209 107 2 1391 280 191 236 0 chr12 105679003 105679092 -15578438 + ID_B1 SINE B4 98 207 -17 2 1391 312 298 21 0 chr12 105679291 105679385 -15578145 + ID_B1 SINE B4 127 222 -2 2 1391 1153 102 0 0 chr12 105679500 105679655 -15577875 + B2_Mm2 SINE B2 3 157 -38 2 1391 243 0 0 0 chr12 105679655 105679682 -15577848 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2 1391 297 0 0 0 chr12 105679870 105679903 -15577627 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1391 422 239 2 63 chr12 105679903 105680017 -15577513 - PB1D9 SINE Alu -10 117 1 2 1391 855 255 93 21 chr12 105680017 105680251 -15577279 - B4 SINE B4 -40 252 2 2 1391 225 0 0 0 chr12 105680368 105680393 -15577137 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1391 272 311 104 0 chr12 105680401 105680507 -15577023 + PB1D10 SINE Alu 1 117 0 2 1391 299 0 73 0 chr12 105680507 105680548 -15576982 + (GAAAA)n Simple_repeat Simple_repeat 4 47 0 2 1391 1620 0 0 0 chr12 105680546 105680938 -15576592 + (CAGGA)n Simple_repeat Simple_repeat 1 392 0 2 1391 702 35 0 0 chr12 105680938 105681023 -15576507 + (GAGAA)n Simple_repeat Simple_repeat 1 85 0 2 1391 382 318 30 8 chr12 105681043 105681176 -15576354 + MIRb SINE MIR 56 191 -77 2 1391 275 18 16 95 chr12 105681470 105681533 -15575997 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 2 1391 1173 48 7 0 chr12 105681534 105681680 -15575850 - B1_Mus2 SINE Alu 0 147 1 2 1391 189 0 0 0 chr12 105682583 105682604 -15574926 + (TTCC)n Simple_repeat Simple_repeat 1 21 0 2 1391 564 29 0 0 chr12 105683104 105683174 -15574356 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1391 192 228 0 0 chr12 105683823 105683880 -15573650 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1391 236 128 43 0 chr12 105684279 105684326 -15573204 + ZP3AR Satellite Satellite 34 82 -130 2 1391 259 305 73 4 chr12 105684360 105684520 -15573010 + MIR SINE MIR 75 242 -20 2 1391 378 0 0 0 chr12 105685552 105685594 -15571936 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1391 405 295 72 0 chr12 105685602 105685741 -15571789 - B4A SINE B4 -6 286 138 2 1391 623 173 6 0 chr12 105687848 105688016 -15569514 + (TG)n Simple_repeat Simple_repeat 2 170 0 2 1391 405 151 0 0 chr12 105688037 105688123 -15569407 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1391 496 269 60 0 chr12 105688172 105688306 -15569224 + B1F1 SINE Alu 7 148 -1 2 1391 323 200 14 28 chr12 105688325 105688397 -15569133 + ID4_ SINE ID 2 72 -11 2 1391 223 265 29 14 chr12 105689540 105689609 -15567921 + B1F1 SINE Alu 6 75 -74 2 1391 1173 136 40 5 chr12 105689604 105689804 -15567726 + B3 SINE B2 6 212 -4 2 1391 448 313 22 15 chr12 105689898 105690034 -15567496 - RSINE1 SINE B4 -21 144 8 2 1391 21 0 0 0 chr12 105690039 105690060 -15567470 + AT_rich Low_complexity Low_complexity 1 21 0 2 1391 250 327 77 60 chr12 105690062 105690179 -15567351 + MER20 DNA MER1_type 1 119 -100 2 1391 357 314 0 0 chr12 105690189 105690294 -15567236 - ORSL DNA Tip100 -11 264 160 2 1391 468 0 0 0 chr12 105690396 105690448 -15567082 + (TTTC)n Simple_repeat Simple_repeat 2 53 0 2 1391 305 235 0 14 chr12 105690449 105690518 -15567012 - B1F SINE Alu -15 134 67 2 1391 291 204 49 39 chr12 105690578 105690680 -15566850 - ORSL DNA Tip100 -163 112 10 2 1391 643 302 69 1 chr12 105691333 105691558 -15565972 + MTEb LTR MaLR 2 241 -138 2 1391 510 287 0 116 chr12 105691675 105691856 -15565674 + MTEb LTR MaLR 219 378 -1 2 1391 1667 284 22 11 chr12 105691858 105692306 -15565224 + MTEb-int LTR MaLR 1 453 -1127 2 1391 725 220 75 9 chr12 105692301 105692470 -15565060 + MTEb-int LTR MaLR 1057 1217 -363 2 1391 242 226 19 0 chr12 105692454 105692507 -15565023 - PB1D10 SINE Alu -41 76 23 2 1391 252 267 13 51 chr12 105692501 105692580 -15564950 - MER2B DNA MER2_type -240 96 21 2 1391 446 196 0 21 chr12 105692679 105692773 -15564757 - PB1D10 SINE Alu -2 115 24 2 1391 28 0 0 0 chr12 105693499 105693527 -15564003 + AT_rich Low_complexity Low_complexity 1 28 0 2 1391 2152 155 31 10 chr12 105693779 105694163 -15563367 - ORR1B1 LTR MaLR -2 392 1 2 1391 731 261 0 0 chr12 105694349 105694510 -15563020 + B3A SINE B2 2 162 -36 2 1391 395 306 43 7 chr12 105694510 105694648 -15562882 + B1F2 SINE Alu 7 149 0 2 1391 834 256 117 12 chr12 105694651 105694908 -15562622 + B4 SINE B4 1 284 -8 2 1391 742 249 43 12 chr12 105695014 105695177 -15562353 + ID_B1 SINE B4 5 172 -52 2 1391 204 273 0 0 chr12 105695194 105695238 -15562292 + G-rich Low_complexity Low_complexity 6 49 0 2 1391 311 276 86 0 chr12 105695246 105695351 -15562179 + PB1D10 SINE Alu 4 117 0 2 1391 495 198 0 0 chr12 105696235 105696331 -15561199 + B3 SINE B2 22 117 -99 2 1391 325 295 60 27 chr12 105696359 105696509 -15561021 - HAL1-3A_ME LINE L1 -716 2142 1988 2 1391 411 21 0 0 chr12 105696511 105696559 -15560971 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1391 324 0 0 0 chr12 105696574 105696610 -15560920 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1391 1739 171 62 0 chr12 105696612 105696934 -15560596 - ORR1C1 LTR MaLR -36 342 1 2 1391 375 23 0 0 chr12 105697002 105697046 -15560484 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1391 542 248 16 0 chr12 105697047 105697168 -15560362 - B3A SINE B2 -75 123 1 2 1391 243 0 0 0 chr12 105697961 105697988 -15559542 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1391 25 0 0 0 chr12 105700065 105700090 -15557440 + AT_rich Low_complexity Low_complexity 1 25 0 2 1391 180 0 0 0 chr12 105700767 105700787 -15556743 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1391 866 167 135 40 chr12 105701250 105701450 -15556080 + ID_B1 SINE B4 2 220 -4 2 1391 35 41 0 0 chr12 105701585 105701634 -15555896 + AT_rich Low_complexity Low_complexity 1 49 0 2 1391 910 124 13 27 chr12 105701642 105701655 -15555875 - B1_Mur3 SINE Alu -2 147 139 2 1391 207 0 0 0 chr12 105701655 105701678 -15555852 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1391 910 124 13 27 chr12 105701678 105701813 -15555717 - B1_Mur3 SINE Alu -11 138 2 2 1391 409 195 0 24 chr12 105701827 105701911 -15555619 - ID4 SINE ID 0 83 2 2 1391 411 256 124 0 chr12 105701911 105702032 -15555498 - B1F1 SINE Alu -2 147 12 2 1391 427 294 163 6 chr12 105702076 105702254 -15555276 + B4A SINE B4 1 206 -86 2 1391 453 36 0 0 chr12 105702270 105702325 -15555205 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1391 228 203 119 0 chr12 105702798 105702857 -15554673 + ID4 SINE ID 3 68 -15 2 1391 239 235 0 0 chr12 105703144 105703195 -15554335 - PB1D7 SINE Alu 0 120 70 2 1391 252 59 0 0 chr12 105703224 105703258 -15554272 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1391 309 250 11 33 chr12 105703258 105703349 -15554181 - B1F1 SINE Alu -49 100 12 2 1391 243 297 47 0 chr12 105703410 105703474 -15554056 + B1_Mus1 SINE Alu 14 80 -68 2 1391 306 0 0 0 chr12 105704341 105704375 -15553155 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1391 351 96 0 0 chr12 105705628 105705680 -15551850 + (CATA)n Simple_repeat Simple_repeat 1 52 0 2 1391 257 284 54 0 chr12 105705695 105705769 -15551761 + B1F SINE Alu 1 78 -71 2 1391 487 227 102 0 chr12 105706216 105706344 -15551186 + B1_Mur2 SINE Alu 4 144 -5 2 1391 711 118 0 0 chr12 105706352 105706487 -15551043 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 2 1391 519 45 0 0 chr12 105706969 105707035 -15550495 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 1391 339 25 0 0 chr12 105707956 105707996 -15549534 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2 1391 230 214 106 0 chr12 105708250 105708327 -15549203 + PB1D10 SINE Alu 3 85 -65 2 1391 29 0 0 0 chr12 105709671 105709700 -15547830 + GC_rich Low_complexity Low_complexity 1 29 0 2 1391 30 45 0 0 chr12 105710791 105710835 -15546695 + AT_rich Low_complexity Low_complexity 1 44 0 2 1391 225 0 0 0 chr12 105715026 105715051 -15542479 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1391 608 250 42 26 chr12 105717584 105717773 -15539757 - ID_B1 SINE B4 -4 220 29 2 1391 252 0 0 0 chr12 105718208 105718236 -15539294 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1391 252 0 0 0 chr12 105718406 105718434 -15539096 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1391 209 217 0 0 chr12 105718974 105719020 -15538510 + T-rich Low_complexity Low_complexity 1 46 0 2 1391 204 40 0 0 chr12 105719756 105719781 -15537749 + (TTG)n Simple_repeat Simple_repeat 1 25 0 2 1391 794 159 0 0 chr12 105719857 105719989 -15537541 - B3A SINE B2 -66 132 1 2 1391 883 224 23 23 chr12 105719992 105720025 -15537505 - B3 SINE B2 0 216 185 2 1391 1279 11 5 53 chr12 105720025 105720214 -15537316 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 2 1391 883 224 23 23 chr12 105720214 105720395 -15537135 - B3 SINE B2 -32 184 3 2 1391 729 161 30 8 chr12 105720686 105720817 -15536713 + B1_Mur1 SINE Alu 1 134 -15 2 1391 749 68 0 79 chr12 105720915 105721042 -15536488 + B1_Mus1 SINE Alu 32 148 0 2 1391 198 0 0 0 chr12 105721112 105721134 -15536396 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1391 274 232 0 55 chr12 105722155 105722228 -15535302 - PB1D10 SINE Alu 0 117 49 2 1391 746 279 48 16 chr12 105722287 105722476 -15535054 - B4 SINE B4 0 292 98 2 1391 195 42 0 0 chr12 105722636 105722660 -15534870 + (GTCTG)n Simple_repeat Simple_repeat 4 27 0 2 1391 425 276 25 82 chr12 105722660 105722813 -15534717 - ID_B1 SINE B4 -3 221 77 2 1391 195 69 0 0 chr12 105722814 105722843 -15534687 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1391 619 209 0 0 chr12 105722844 105722954 -15534576 - PB1D9 SINE Alu 0 120 11 3 1391 419 265 20 8 chr12 105722972 105723112 -15534418 - B1F SINE Alu 0 149 3 3 1391 475 272 9 0 chr12 105723739 105723853 -15533677 + PB1D10 SINE Alu 3 117 0 3 1391 480 279 30 37 chr12 105725059 105725193 -15532337 - RSINE1 SINE B4 -30 135 3 3 1391 286 246 62 0 chr12 105725297 105725362 -15532168 - ID2 SINE ID -13 70 2 3 1391 368 318 56 0 chr12 105725550 105725657 -15531873 + PB1D10 SINE Alu 5 117 0 3 1391 489 277 0 16 chr12 105725685 105725806 -15531724 + ID_B1 SINE B4 106 224 0 3 1391 492 184 0 0 chr12 105725890 105725993 -15531537 + (TG)n Simple_repeat Simple_repeat 2 104 0 3 1391 653 270 107 0 chr12 105725999 105726158 -15531372 - ID_B1 SINE B4 -48 176 1 3 1391 856 177 177 0 chr12 105727012 105727187 -15530343 + B3 SINE B2 4 209 -7 3 1391 211 0 88 0 chr12 105727214 105727248 -15530282 + (GGAA)n Simple_repeat Simple_repeat 2 38 0 3 1391 235 296 74 152 chr12 105727249 105727382 -15530148 + MLT1C LTR MaLR 203 333 -134 3 1391 441 299 28 28 chr12 105727382 105727523 -15530007 + B1F SINE Alu 3 143 -6 3 1391 235 296 74 152 chr12 105727523 105727632 -15529898 + MLT1C LTR MaLR 334 426 -41 3 1391 239 251 84 66 chr12 105727643 105727754 -15529776 + PB1D10 SINE Alu 32 136 -13 3 1391 225 94 0 0 chr12 105727754 105727786 -15529744 + (CAAAG)n Simple_repeat Simple_repeat 1 32 0 3 1391 224 252 73 137 chr12 105727786 105727798 -15529732 + B1F SINE Alu 137 147 -2 3 1391 446 212 131 0 chr12 105727926 105728025 -15529505 - PB1D10 SINE Alu -5 112 1 3 1391 376 244 0 11 chr12 105728071 105728162 -15529368 - MER33 DNA MER1_type -231 93 4 3 1391 211 236 18 35 chr12 105729143 105729200 -15528330 + C-rich Low_complexity Low_complexity 1 56 0 3 1391 439 204 80 0 chr12 105729205 105729318 -15528212 - B1F SINE Alu -5 144 23 3 1391 518 206 9 45 chr12 105729599 105729711 -15527819 + ID_B1 SINE B4 116 223 -1 3 1391 385 271 6 75 chr12 105729721 105729843 -15527687 + B3A SINE B2 80 200 -16 3 1391 201 39 0 0 chr12 105729843 105729869 -15527661 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 1391 310 276 51 80 chr12 105729869 105729884 -15527646 + B3 SINE B2 201 213 -3 3 1391 309 280 89 29 chr12 105729902 105730148 -15527382 + L1M5 LINE L1 4226 4486 -1660 3 1391 354 331 7 7 chr12 105730177 105730314 -15527216 + L1M5 LINE L1 4562 4698 -1448 3 1391 402 196 132 38 chr12 105730726 105730832 -15526698 + PB1D10 SINE Alu 1 116 -1 3 1391 346 221 0 29 chr12 105730861 105730931 -15526599 + ID4 SINE ID 5 72 -11 3 1391 273 254 16 0 chr12 105730931 105730994 -15526536 + GA-rich Low_complexity Low_complexity 1 64 0 3 1391 332 316 0 31 chr12 105731098 105731196 -15526334 + RSINE1 SINE B4 2 96 -69 3 1391 278 394 20 47 chr12 105732021 105732170 -15525360 + ID_B1 SINE B4 47 191 -33 3 1391 335 292 28 23 chr12 105732071 105732178 -15525352 + B1F SINE Alu 13 113 -36 3 1391 550 232 130 57 chr12 105732191 105732383 -15525147 + ID_B1 SINE B4 8 213 -11 3 1391 333 244 51 0 chr12 105732660 105732738 -15524792 + RSINE1 SINE B4 82 163 -2 3 1391 183 42 0 0 chr12 105732758 105732782 -15524748 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1391 315 0 0 0 chr12 105732843 105732878 -15524652 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1391 1083 232 5 14 chr12 105732878 105733088 -15524442 - ID_B1 SINE B4 -11 213 6 3 1391 322 284 93 17 chr12 105733540 105733658 -15523872 - MLT1C LTR MaLR -324 143 17 3 1391 809 236 96 15 chr12 105734219 105734417 -15523113 - ID_B1 SINE B4 -6 218 5 3 1391 528 59 0 0 chr12 105734853 105734921 -15522609 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1391 603 311 5 92 chr12 105735271 105735327 -15522203 + B4 SINE B4 40 82 -210 3 1391 637 254 154 0 chr12 105735327 105735496 -15522034 + B3A SINE B2 1 195 -3 3 1391 603 311 5 92 chr12 105735496 105735634 -15521896 + B4 SINE B4 83 217 -75 3 1391 441 0 0 0 chr12 105735729 105735778 -15521752 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1391 321 347 75 51 chr12 105735878 105736042 -15521488 + MLT1C LTR MaLR 60 310 -157 3 1391 458 264 63 9 chr12 105736042 105736153 -15521377 + B4 SINE B4 113 229 -63 3 1391 321 347 75 51 chr12 105736153 105736209 -15521321 + MLT1C LTR MaLR 311 398 -69 3 1391 318 265 0 0 chr12 105736237 105736354 -15521176 + (CA)n Simple_repeat Simple_repeat 2 118 0 3 1391 805 296 115 4 chr12 105737185 105737446 -15520084 - B4A SINE B4 -2 290 1 3 1391 759 278 13 102 chr12 105737627 105737931 -15519599 - ORR1E LTR MaLR -62 297 21 3 1391 314 269 136 18 chr12 105738282 105738392 -15519138 - HAL1-3A_ME LINE L1 -70 2788 2666 3 1391 326 226 157 19 chr12 105738398 105738506 -15519024 - HAL1-3A_ME LINE L1 -70 2788 2666 3 1391 220 211 0 0 chr12 105738796 105738834 -15518696 + (CCAA)n Simple_repeat Simple_repeat 3 40 0 3 1391 249 83 0 0 chr12 105739378 105739414 -15518116 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 3 1391 313 226 205 24 chr12 105739444 105739571 -15517959 - RSINE1 SINE B4 -14 151 2 3 1391 231 36 0 0 chr12 105739796 105739824 -15517706 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1391 301 340 30 10 chr12 105740940 105741041 -15516489 + LTR40b LTR ERVL 134 236 -226 3 1391 196 362 25 0 chr12 105741303 105741383 -15516147 + MIRb SINE MIR 163 244 -24 3 1391 703 180 6 11 chr12 105741456 105741547 -15515983 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 3 1391 2096 185 64 25 chr12 105741547 105741952 -15515578 - MTC LTR MaLR 0 421 1 3 1391 703 180 6 11 chr12 105741952 105742040 -15515490 + (TGGA)n Simple_repeat Simple_repeat 4 91 0 3 1391 383 214 0 73 chr12 105742610 105742706 -15514824 - PB1D9 SINE Alu -1 119 31 3 1391 914 212 49 10 chr12 105742934 105743139 -15514391 + B3 SINE B2 4 216 0 3 1391 1251 86 0 0 chr12 105743144 105743318 -15514212 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 3 1391 375 236 103 66 chr12 105743411 105743547 -15513983 + B1_Mus1 SINE Alu 1 141 -7 3 1391 212 106 87 43 chr12 105743561 105743630 -15513900 + GA-rich Low_complexity Low_complexity 3 74 0 3 1391 333 100 0 0 chr12 105743633 105743683 -15513847 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 3 1391 644 297 15 101 chr12 105744789 105745094 -15512436 - MTEa LTR MaLR -108 271 1 3 1391 185 0 0 39 chr12 105745201 105745227 -15512303 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 3 1391 235 336 54 14 chr12 105745460 105745608 -15511922 + L1M5 LINE L1 5727 5880 -282 3 1391 180 0 0 0 chr12 105746736 105746756 -15510774 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 3 1391 1043 263 80 29 chr12 105746910 105747184 -15510346 - B4A SINE B4 -3 289 2 3 1391 789 269 40 5 chr12 105747227 105747429 -15510101 - B3 SINE B2 -6 210 2 3 1391 304 185 46 0 chr12 105747477 105747542 -15509988 - ID4 SINE ID -15 68 1 3 1391 755 332 144 8 chr12 105747732 105748114 -15509416 + MLT1C LTR MaLR 34 467 0 3 1391 243 222 0 0 chr12 105748425 105748470 -15509060 + G-rich Low_complexity Low_complexity 1 45 0 3 1391 356 303 71 0 chr12 105748477 105748576 -15508954 + RSINE1 SINE B4 9 114 -51 3 1391 298 159 29 0 chr12 105748870 105748939 -15508591 + CT-rich Low_complexity Low_complexity 2 72 0 3 1391 1186 49 0 27 chr12 105749005 105749017 -15508513 - B1_Mus1 SINE Alu -4 144 136 3 1391 207 0 0 0 chr12 105749017 105749040 -15508490 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 3 1391 1186 49 0 27 chr12 105749040 105749174 -15508356 - B1_Mus1 SINE Alu -13 135 2 3 1391 327 286 63 46 chr12 105749234 105749472 -15508058 + L1MB5 LINE L1 5920 6161 -13 3 1391 189 0 0 0 chr12 105749573 105749594 -15507936 + (CACCC)n Simple_repeat Simple_repeat 3 23 0 3 1391 675 292 5 29 chr12 105750076 105750741 -15506789 + G-rich Low_complexity Low_complexity 1 649 0 3 1391 191 282 88 25 chr12 105750829 105750909 -15506621 + MIRc SINE MIR 64 148 -120 3 1391 1386 157 26 4 chr12 105750913 105751144 -15506386 - RLTR42 LTR ERVK -3 236 1 3 1391 6810 175 38 43 chr12 105751144 105752643 -15504887 - RLTR42-int LTR ERVK 0 5522 4032 3 1391 1190 55 7 0 chr12 105752665 105752810 -15504720 - B1_Mus2 SINE Alu 0 147 2 3 1391 1205 106 0 5 chr12 105752810 105752999 -15504531 - RLTR42-int LTR ERVK -1477 4045 3858 3 1391 210 71 0 0 chr12 105752999 105753027 -15504503 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 3 1391 2007 227 43 2 chr12 105753028 105753465 -15504065 - Lx5 LINE L1 -17 7033 6579 3 1391 3510 167 17 9 chr12 105753457 105754121 -15503409 + L1_Mur2 LINE L1 4978 5646 -231 3 1391 2084 116 23 39 chr12 105754121 105754562 -15502968 - RLTR42-int LTR ERVK -1690 3832 3399 3 1391 1852 209 6 14 chr12 105754563 105754912 -15502618 - ORR1C1 LTR MaLR 0 378 33 3 1391 1866 119 119 165 chr12 105754989 105755402 -15502128 + ORR1B1 LTR MaLR 1 394 0 3 1391 3140 190 55 14 chr12 105755402 105756052 -15501478 + ORR1B1-int LTR MaLR 1 677 -832 3 1391 457 266 20 27 chr12 105756064 105756211 -15501319 - L1MC1 LINE L1 -416 5917 5772 3 1391 323 299 120 56 chr12 105756217 105756390 -15501140 - L1ME2 LINE L1 -73 6091 5908 3 1391 688 277 28 17 chr12 105756390 105756570 -15500960 - B3A SINE B2 -16 182 1 3 1391 323 299 120 56 chr12 105756570 105756612 -15500918 - L1ME2 LINE L1 -257 5907 5863 3 1391 204 214 0 0 chr12 105756624 105756680 -15500850 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1391 263 231 0 37 chr12 105756767 105756821 -15500709 + B1F2 SINE Alu 1 52 -97 3 1391 578 241 113 0 chr12 105756926 105757059 -15500471 + B1F SINE Alu 2 149 0 3 1391 605 207 0 16 chr12 105757152 105757274 -15500256 + PB1D9 SINE Alu 13 126 -21 3 1391 399 227 84 77 chr12 105757367 105757510 -15500020 - B1_Mur2 SINE Alu -1 148 5 3 1391 357 304 78 62 chr12 105758100 105758293 -15499237 + MLT1L LTR MaLR 120 315 -295 3 1391 676 310 15 10 chr12 105758648 105758850 -15498680 + RMER21A LTR ERV1 377 579 -368 3 1391 672 13 0 0 chr12 105759857 105759934 -15497596 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1391 267 250 35 23 chr12 105760201 105760287 -15497243 + Charlie24 DNA MER1_type 2332 2418 -32 3 1391 360 250 91 32 chr12 105760535 105760721 -15496809 + Charlie5 DNA MER1_type 2363 2559 -65 3 1391 27 73 0 0 chr12 105760723 105760778 -15496752 + AT_rich Low_complexity Low_complexity 1 55 0 3 1391 660 241 45 0 chr12 105760778 105760911 -15496619 + B1_Mur1 SINE Alu 2 140 -9 3 1391 624 230 15 8 chr12 105761055 105761184 -15496346 - ID_B1 SINE B4 -62 230 99 4 1391 478 269 0 48 chr12 105761393 105761518 -15496012 + B1F2 SINE Alu 25 143 -6 4 1391 2327 177 41 22 chr12 105762284 105762693 -15494837 - MTC LTR MaLR -7 414 1 4 1391 230 229 0 20 chr12 105762802 105762851 -15494679 + CT-rich Low_complexity Low_complexity 3 50 0 4 1391 298 274 0 0 chr12 105762853 105762915 -15494615 - ID_B1 SINE B4 -1 223 162 4 1391 231 319 43 0 chr12 105762857 105762926 -15494604 - B1F SINE Alu -5 144 73 4 1391 269 259 0 0 chr12 105762950 105763004 -15494526 - ID SINE ID -170 54 1 4 1391 227 31 0 30 chr12 105763042 105763075 -15494455 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1391 271 326 32 32 chr12 105763216 105763311 -15494219 + MLT1J LTR MaLR 109 203 -309 4 1391 408 325 114 59 chr12 105763365 105763636 -15493894 + ORR1E LTR MaLR 61 346 -13 4 1391 257 310 61 110 chr12 105763982 105764145 -15493385 + MLT1A1 LTR MaLR 15 169 -196 4 1391 274 301 9 80 chr12 105764286 105764398 -15493132 + MLT1A1 LTR MaLR 301 404 -4 4 1391 468 323 53 51 chr12 105764408 105764785 -15492745 + MLT1J LTR MaLR 70 444 0 4 1391 23 33 0 0 chr12 105764824 105764854 -15492676 + AT_rich Low_complexity Low_complexity 1 30 0 4 1391 1278 82 27 5 chr12 105764861 105765046 -15492484 - B2_Mm2 SINE B2 -3 192 4 4 1391 27 29 0 0 chr12 105765147 105765181 -15492349 + AT_rich Low_complexity Low_complexity 1 34 0 4 1391 773 215 82 0 chr12 105765215 105765373 -15492157 + B3 SINE B2 2 172 -44 4 1391 866 103 172 0 chr12 105765362 105765507 -15492023 - ORR1A4 LTR MaLR -159 170 1 4 1391 186 43 0 0 chr12 105765563 105765586 -15491944 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1391 1220 68 0 0 chr12 105765598 105765744 -15491786 - B1_Mus2 SINE Alu 0 147 2 4 1391 190 224 61 0 chr12 105765858 105765907 -15491623 + MIR SINE MIR 88 139 -69 4 1391 794 239 54 10 chr12 105765931 105766134 -15491396 - B3 SINE B2 0 216 5 4 1391 490 255 45 9 chr12 105766503 105766614 -15490916 - B3A SINE B2 -83 115 1 4 1391 436 229 57 9 chr12 105766624 105766730 -15490800 - PB1D10 SINE Alu -1 116 6 4 1391 300 242 94 10 chr12 105766647 105766743 -15490787 - ID_B1 SINE B4 -52 172 69 4 1391 2497 179 116 13 chr12 105766903 105767509 -15490021 - Lx9 LINE L1 0 7644 6977 4 1391 22 56 0 0 chr12 105767509 105767545 -15489985 + AT_rich Low_complexity Low_complexity 1 36 0 4 1391 247 232 35 18 chr12 105767608 105767665 -15489865 + PB1 SINE Alu 68 125 -2 4 1391 309 250 29 0 chr12 105767748 105767816 -15489714 + ID4_ SINE ID 1 70 -13 4 1391 255 299 427 5 chr12 105767885 105768083 -15489447 - MTEa LTR MaLR -49 330 47 4 1391 387 0 0 0 chr12 105768538 105768581 -15488949 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1391 348 301 11 0 chr12 105768782 105768875 -15488655 - PB1D10 SINE Alu -23 94 1 4 1391 365 225 14 0 chr12 105768806 105768877 -15488653 - ID_B1 SINE B4 -73 151 80 4 1391 190 281 94 0 chr12 105769082 105769146 -15488384 + MIR SINE MIR 81 150 -112 4 1391 206 88 0 56 chr12 105769703 105769739 -15487791 + (CCCCCA)n Simple_repeat Simple_repeat 5 38 0 4 1391 391 177 97 39 chr12 105770732 105770845 -15486685 + RSINE1 SINE B4 3 118 -174 4 1391 339 236 63 45 chr12 105770904 105771015 -15486515 + PB1D9 SINE Alu 8 120 0 4 1391 1224 209 4 9 chr12 105771413 105771640 -15485890 + URR1A DNA MER1_type 1 226 0 4 1391 413 293 234 5 chr12 105771652 105771839 -15485691 + MER2 DNA MER2_type 5 235 -110 4 1391 343 221 0 95 chr12 105771839 105771944 -15485586 + MTEa LTR MaLR 2 96 -283 4 1391 982 221 10 20 chr12 105771947 105772146 -15485384 + ID_B1 SINE B4 23 219 -5 4 1391 242 296 21 69 chr12 105772028 105772173 -15485357 - YREP_Mm Unknown Unknown -1519 293 156 4 1391 467 257 69 7 chr12 105772276 105772421 -15485109 + MTEa LTR MaLR 226 379 0 4 1391 326 281 48 12 chr12 105772421 105772492 -15485038 - PB1D10 SINE Alu -42 75 2 4 1391 468 0 0 0 chr12 105772494 105772546 -15484984 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1391 304 341 22 33 chr12 105773027 105773046 -15484484 - B4 SINE B4 -117 175 86 4 1391 416 211 0 14 chr12 105773046 105773118 -15484412 - PB1D9 SINE Alu -49 71 1 4 1391 228 111 0 0 chr12 105773374 105773410 -15484120 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1391 254 333 187 18 chr12 105773495 105773666 -15483864 + MIR SINE MIR 48 254 -14 4 1391 746 291 128 17 chr12 105774488 105774722 -15482808 + B4 SINE B4 8 267 -25 4 1392 1594 152 104 63 chr12 105775241 105775433 -15482097 + ORR1C2 LTR MaLR 1 190 -194 4 1392 387 0 0 0 chr12 105775433 105775476 -15482054 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1392 1594 152 104 63 chr12 105775476 105775648 -15481882 + ORR1C2 LTR MaLR 191 380 -4 4 1392 471 204 105 53 chr12 105775694 105775808 -15481722 + B4 SINE B4 167 286 -6 4 1392 298 329 59 0 chr12 105776148 105776300 -15481230 - L1M5 LINE L1 -662 5532 5372 4 1392 262 196 161 0 chr12 105776388 105776444 -15481086 + RMER10A LTR ERVL 1 65 -377 4 1392 1826 139 66 0 chr12 105776440 105776743 -15480787 + ORR1B2 LTR MaLR 45 367 0 4 1392 320 309 71 8 chr12 105776743 105776866 -15480664 - B1F SINE Alu -16 133 3 4 1392 290 156 16 0 chr12 105777236 105777300 -15480230 + C-rich Low_complexity Low_complexity 3 67 0 4 1392 333 222 0 40 chr12 105777316 105777391 -15480139 - PB1D10 SINE Alu -5 112 41 4 1392 372 219 110 0 chr12 105777383 105777476 -15480054 - B1F1 SINE Alu -16 104 3 4 1392 227 329 0 28 chr12 105777414 105777486 -15480044 - B4A SINE B4 -143 149 80 4 1392 446 172 162 0 chr12 105777720 105777819 -15479711 + B1_Mur2 SINE Alu 35 149 0 4 1392 893 172 52 57 chr12 105777823 105778033 -15479497 - B3 SINE B2 -7 209 1 4 1392 438 304 95 67 chr12 105778265 105778550 -15478980 + MLT1K LTR MaLR 148 440 -155 4 1392 396 0 0 0 chr12 105778811 105778855 -15478675 + (CTTG)n Simple_repeat Simple_repeat 2 45 0 4 1392 432 55 0 0 chr12 105778855 105778910 -15478620 + (TTC)n Simple_repeat Simple_repeat 2 56 0 4 1392 1039 43 0 0 chr12 105778910 105779049 -15478481 - B1_Mm SINE Alu 0 147 9 4 1392 532 206 40 93 chr12 105778915 105779065 -15478465 - B4 SINE B4 -71 221 80 4 1392 404 206 27 109 chr12 105778945 105779092 -15478438 - MT2B LTR ERVL -337 264 130 4 1392 304 278 23 9 chr12 105779433 105779538 -15477992 - PB1D10 SINE Alu 0 117 12 4 1392 249 317 76 9 chr12 105779455 105779560 -15477970 - ID_B1 SINE B4 -48 176 65 4 1392 284 161 0 16 chr12 105779670 105779733 -15477797 + CT-rich Low_complexity Low_complexity 2 63 0 4 1392 1092 69 7 0 chr12 105779890 105780035 -15477495 + B1_Mus2 SINE Alu 2 147 0 4 1392 310 323 11 0 chr12 105780311 105780404 -15477126 - L1MC1 LINE L1 -20 6313 6220 4 1392 396 292 0 0 chr12 105780546 105780659 -15476871 + PB1D10 SINE Alu 1 113 -4 4 1392 753 174 28 7 chr12 105780668 105780813 -15476717 + B1_Mur2 SINE Alu 2 149 0 4 1392 1159 250 136 21 chr12 105780984 105781360 -15476170 - MTD LTR MaLR 0 419 1 4 1392 187 182 0 0 chr12 105781998 105782031 -15475499 - MIR SINE MIR -201 61 29 4 1392 671 124 0 9 chr12 105782106 105782220 -15475310 + (TGGGGG)n Simple_repeat Simple_repeat 1 113 0 4 1392 260 267 19 19 chr12 105782467 105782570 -15474960 + (CATATA)n Simple_repeat Simple_repeat 4 106 0 4 1392 465 97 0 0 chr12 105782584 105782656 -15474874 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1392 204 238 0 0 chr12 105782912 105782954 -15474576 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1392 286 397 0 8 chr12 105783680 105783807 -15473723 + MIRc SINE MIR 39 164 -104 4 1392 585 273 67 46 chr12 105785292 105785530 -15472000 + MLT1B LTR MaLR 67 309 -81 4 1392 510 17 0 0 chr12 105786124 105786183 -15471347 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1392 1183 244 98 17 chr12 105787640 105787986 -15469544 - MTEa LTR MaLR 0 379 6 4 1392 386 339 61 39 chr12 105788534 105788764 -15468766 + ORR1E LTR MaLR 1 235 -124 4 1392 393 22 0 0 chr12 105788791 105788837 -15468693 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1392 207 162 0 0 chr12 105788842 105788879 -15468651 + CT-rich Low_complexity Low_complexity 2 38 0 4 1392 337 312 34 51 chr12 105788903 105789021 -15468509 - PB1D10 SINE Alu 0 117 2 4 1392 242 234 125 0 chr12 105789733 105789797 -15467733 + MIRb SINE MIR 118 189 -79 4 1392 299 345 33 26 chr12 105790153 105790305 -15467225 - MIRc SINE MIR -104 164 12 4 1392 207 255 29 53 chr12 105790357 105790527 -15467003 + (TATATG)n Simple_repeat Simple_repeat 6 171 0 4 1392 394 244 34 34 chr12 105790497 105790733 -15466797 + (TATG)n Simple_repeat Simple_repeat 1 236 0 4 1392 183 100 0 0 chr12 105791308 105791338 -15466192 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1392 353 244 33 22 chr12 105791444 105791536 -15465994 - PB1D10 SINE Alu -2 115 23 4 1392 543 250 14 14 chr12 105791478 105791616 -15465914 - ID_B1 SINE B4 -63 161 24 4 1392 258 286 0 0 chr12 105791557 105791627 -15465903 - ID2 SINE ID -2 81 12 4 1392 188 239 43 0 chr12 105792765 105792811 -15464719 + L2b LINE L2 3311 3358 -17 4 1392 186 380 10 0 chr12 105795172 105795272 -15462258 + MIRb SINE MIR 89 189 -79 4 1392 303 146 0 0 chr12 105795470 105795525 -15462005 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1392 333 0 0 0 chr12 105795525 105795562 -15461968 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1392 301 299 15 23 chr12 105796482 105796612 -15460918 + CT-rich Low_complexity Low_complexity 4 132 0 4 1392 647 109 0 18 chr12 105796612 105796724 -15460806 + (TCC)n Simple_repeat Simple_repeat 2 111 0 5 1392 976 221 25 10 chr12 105796892 105797093 -15460437 - B3 SINE B2 -6 210 7 5 1392 246 320 91 26 chr12 105797400 105797432 -15460098 - B4A SINE B4 -47 245 86 5 1392 275 336 0 17 chr12 105797432 105797550 -15459980 - PB1D10 SINE Alu -1 116 1 5 1392 414 190 40 65 chr12 105797932 105798056 -15459474 + L1MB3 LINE L1 5883 6003 -180 5 1392 466 318 8 98 chr12 105798139 105798373 -15459157 + ID_B1 SINE B4 2 214 -10 5 1392 431 328 68 16 chr12 105798556 105798804 -15458726 + Tigger7 DNA MER2_type 2216 2476 -15 5 1392 229 304 87 19 chr12 105799169 105799273 -15458257 + LTR16C LTR ERVL 322 432 -57 5 1392 1160 62 0 0 chr12 105800908 105801054 -15456476 - B1_Mus2 SINE Alu -1 146 1 5 1392 209 269 0 0 chr12 105801695 105801747 -15455783 + L2b LINE L2 3309 3360 -15 5 1392 503 253 22 7 chr12 105801787 105801916 -15455614 + B1F SINE Alu 1 132 -17 5 1392 450 0 0 0 chr12 105801919 105801969 -15455561 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1392 357 43 0 0 chr12 105801969 105802015 -15455515 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1392 2232 94 3 0 chr12 105802092 105802410 -15455120 - ORR1A2 LTR MaLR -8 319 1 5 1392 481 307 71 58 chr12 105802416 105802773 -15454757 - ORR1E LTR MaLR -30 340 1 5 1392 705 143 24 28 chr12 105803492 105803753 -15453777 + (TG)n Simple_repeat Simple_repeat 1 259 0 5 1392 574 184 5 38 chr12 105803712 105803898 -15453632 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1392 657 156 49 3 chr12 105803900 105804210 -15453320 + (TG)n Simple_repeat Simple_repeat 1 324 0 5 1392 239 291 96 68 chr12 105804210 105804296 -15453234 - B3A SINE B2 -16 182 1 5 1392 402 209 66 0 chr12 105804296 105804387 -15453143 - B4 SINE B4 -195 97 1 5 1392 1787 286 110 27 chr12 105806418 105806875 -15450655 - RMER15-int LTR ERVL -3628 1371 866 5 1392 426 20 0 0 chr12 105806875 105806926 -15450604 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1392 1787 286 110 27 chr12 105806926 105807250 -15450280 - RMER15-int LTR ERVL -4134 865 525 5 1392 609 305 29 45 chr12 105807698 105807942 -15449588 - RMER15 LTR ERVL 0 575 336 5 1392 2748 62 49 7 chr12 105808029 105808321 -15449209 - BGLII_Mus LTR ERVK 0 422 118 5 1392 2493 43 71 0 chr12 105808321 105808644 -15448886 + ORR1A1 LTR MaLR 1 346 0 5 1392 2748 62 49 7 chr12 105808644 105808756 -15448774 - BGLII_Mus LTR ERVK -305 117 1 5 1392 2214 161 28 35 chr12 105809149 105809573 -15447957 + MTC LTR MaLR 1 421 0 5 1392 330 364 113 41 chr12 105809602 105809992 -15447538 + HAL1 LINE L1 451 868 -1639 5 1392 873 321 74 31 chr12 105810146 105810780 -15446750 + HAL1 LINE L1 1091 1751 -756 5 1392 532 294 33 22 chr12 105810790 105810974 -15446556 - MLT1B LTR MaLR -8 382 197 5 1392 378 0 0 0 chr12 105811253 105811295 -15446235 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1392 24 32 0 0 chr12 105813104 105813135 -15444395 + AT_rich Low_complexity Low_complexity 1 31 0 5 1392 203 171 0 0 chr12 105813149 105813184 -15444346 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 5 1392 222 315 87 75 chr12 105813285 105813446 -15444084 - B4A SINE B4 -56 236 74 5 1392 531 92 0 0 chr12 105813949 105814036 -15443494 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 1392 225 0 0 0 chr12 105814036 105814061 -15443469 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1392 518 242 78 14 chr12 105814285 105814472 -15443058 + MLT1A LTR MaLR 166 374 0 5 1392 307 256 15 0 chr12 105814994 105815127 -15442403 + GA-rich Low_complexity Low_complexity 2 136 0 5 1392 221 157 0 56 chr12 105815283 105815337 -15442193 + GA-rich Low_complexity Low_complexity 1 51 0 5 1392 653 209 76 81 chr12 105815835 105816033 -15441497 + B3A SINE B2 2 198 0 5 1392 380 328 7 36 chr12 105817308 105817447 -15440083 - ORR1E LTR MaLR -221 138 4 5 1392 324 0 0 0 chr12 105817513 105817549 -15439981 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1392 450 0 0 0 chr12 105817624 105817674 -15439856 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1392 741 230 54 35 chr12 105817674 105817866 -15439664 - B3 SINE B2 -20 196 3 5 1392 638 305 24 9 chr12 105817879 105818091 -15439439 - ID_B1 SINE B4 -9 215 1 5 1392 263 318 36 36 chr12 105818403 105818535 -15438995 + L2c LINE L2 3251 3383 -4 5 1392 595 267 11 17 chr12 105818535 105818714 -15438816 + MER5B DNA MER1_type 1 178 0 5 1392 515 305 114 86 chr12 105819692 105820047 -15437483 - MLT1C LTR MaLR -3 464 82 5 1392 339 231 23 93 chr12 105820047 105820176 -15437354 + PB1D9 SINE Alu 1 120 0 5 1392 515 305 114 86 chr12 105820176 105820215 -15437315 - MLT1C LTR MaLR -386 81 59 5 1392 216 330 22 11 chr12 105821274 105821290 -15436240 + B4A SINE B4 71 87 -205 5 1392 437 252 92 0 chr12 105821290 105821421 -15436109 + B1F1 SINE Alu 3 145 -4 5 1392 333 62 0 0 chr12 105821576 105821624 -15435906 + (TTG)n Simple_repeat Simple_repeat 1 48 0 5 1392 1342 51 51 0 chr12 105821630 105821808 -15435722 - B2_Mm2 SINE B2 -7 188 2 5 1392 189 0 0 0 chr12 105821816 105821837 -15435693 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 5 1392 792 127 7 63 chr12 105821838 105821981 -15435549 - B1_Mur3 SINE Alu -13 136 2 5 1392 197 33 33 0 chr12 105823519 105823549 -15433981 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 5 1392 245 343 72 78 chr12 105823595 105823940 -15433590 + MER96B DNA hAT 52 394 -23 5 1392 246 116 0 0 chr12 105824403 105824446 -15433084 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 5 1392 205 215 68 35 chr12 105824997 105825089 -15432441 - MIRc SINE MIR -50 218 117 5 1392 216 297 47 0 chr12 105825583 105825689 -15431841 + L2c LINE L2 3060 3176 -211 5 1392 461 216 167 8 chr12 105825737 105825863 -15431667 - B1_Mur2 SINE Alu -3 146 1 5 1392 273 227 28 102 chr12 105825771 105825879 -15431651 - MT2B LTR ERVL -347 254 155 5 1392 189 0 0 0 chr12 105825939 105825960 -15431570 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 5 1392 920 246 52 38 chr12 105826907 105827195 -15430335 + B4A SINE B4 1 292 0 5 1392 201 209 0 23 chr12 105827260 105827304 -15430226 + A-rich Low_complexity Low_complexity 1 43 0 5 1392 378 0 0 0 chr12 105827345 105827387 -15430143 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1392 287 49 24 0 chr12 105827491 105827532 -15429998 + (CCCCCT)n Simple_repeat Simple_repeat 2 43 0 5 1392 660 236 155 1 chr12 105827603 105827830 -15429700 - L1MB4 LINE L1 -260 5920 5660 5 1392 312 250 118 20 chr12 105827924 105828026 -15429504 - RSINE1 SINE B4 0 165 54 5 1392 610 293 66 80 chr12 105828237 105828526 -15429004 + B4A SINE B4 8 292 0 5 1392 303 28 0 0 chr12 105829044 105829080 -15428450 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1392 209 214 0 0 chr12 105829971 105830013 -15427517 + MIR SINE MIR 213 254 -8 5 1392 560 244 0 56 chr12 105830483 105830609 -15426921 + PB1D7 SINE Alu 1 119 -1 5 1392 189 276 170 9 chr12 105830609 105830727 -15426803 - MIR SINE MIR -91 171 35 5 1392 343 38 38 0 chr12 105832673 105832726 -15424804 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1392 208 333 21 7 chr12 105832750 105832895 -15424635 + (TG)n Simple_repeat Simple_repeat 1 147 0 5 1392 473 231 239 9 chr12 105832970 105833202 -15424328 - MT2A LTR ERVL 0 533 253 5 1392 255 277 64 76 chr12 105833345 105833517 -15424013 + RLTR21 LTR ERVK 1084 1253 -319 5 1392 1098 232 33 76 chr12 105835501 105835804 -15421726 + B4 SINE B4 3 292 0 5 1392 201 229 0 0 chr12 105835808 105835856 -15421674 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1392 586 316 69 5 chr12 105836216 105836404 -15421126 + ID_B1 SINE B4 2 201 -23 5 1392 936 295 28 41 chr12 105838562 105838852 -15418678 + B4 SINE B4 7 292 0 5 1392 228 232 0 35 chr12 105838854 105838912 -15418618 + (CATA)n Simple_repeat Simple_repeat 3 58 0 5 1392 395 150 29 29 chr12 105838912 105839015 -15418515 + G-rich Low_complexity Low_complexity 4 106 0 5 1392 187 395 0 44 chr12 105839019 105839109 -15418421 - L2a LINE L2 -2 3424 3339 5 1392 212 287 149 83 chr12 105839247 105839475 -15418055 - L2a LINE L2 -220 3206 2964 5 1392 210 128 0 0 chr12 105839679 105839718 -15417812 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 5 1392 306 205 0 0 chr12 105839718 105839796 -15417734 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1392 473 281 8 32 chr12 105839843 105839968 -15417562 - RSINE1 SINE B4 -40 125 4 5 1392 4283 153 26 1 chr12 105839980 105840771 -15416759 + L1_Mur3 LINE L1 3176 3986 -1894 5 1392 217 327 0 0 chr12 105840810 105840862 -15416668 - ID4_ SINE ID -30 53 2 5 1392 1388 162 46 63 chr12 105841248 105841535 -15415995 + MTC LTR MaLR 137 414 -7 5 1392 577 335 59 69 chr12 105841536 105841841 -15415689 - ORR1E LTR MaLR -55 304 3 5 1392 324 0 0 0 chr12 105842891 105842927 -15414603 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 5 1392 247 205 32 170 chr12 105842964 105843058 -15414472 + B4A SINE B4 212 292 0 5 1392 376 255 60 25 chr12 105843744 105843865 -15413665 + MIRm SINE MIR 61 181 -81 5 1392 1226 154 19 5 chr12 105844744 105844953 -15412577 + URR1B DNA MER1_type 1 212 -13 5 1392 216 200 173 0 chr12 105845478 105845553 -15411977 - B2_Mm2 SINE B2 -11 184 97 5 1392 359 307 96 65 chr12 105846190 105846283 -15411247 - MLT1J LTR MaLR -40 472 377 5 1392 2096 167 3 16 chr12 105846283 105846661 -15410869 + Lx LINE L1 6282 6654 0 5 1392 359 307 96 65 chr12 105846661 105846797 -15410733 - MLT1J LTR MaLR -136 376 236 5 1392 1675 31 0 0 chr12 105847102 105847294 -15410236 - B2_Mm1a SINE B2 0 193 2 5 1392 311 252 54 9 chr12 105847501 105847725 -15409805 + RMER17D LTR ERVK 287 520 -369 5 1392 802 269 116 12 chr12 105848577 105848836 -15408694 + B4A SINE B4 1 286 -6 5 1392 252 0 0 0 chr12 105849588 105849616 -15407914 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1392 312 27 0 0 chr12 105849616 105849652 -15407878 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1392 1121 226 77 104 chr12 105849727 105849928 -15407602 - ORR1E LTR MaLR -4 355 138 6 1392 288 0 0 0 chr12 105849928 105849960 -15407570 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1392 1121 226 77 104 chr12 105849960 105849998 -15407532 - ORR1E LTR MaLR -222 137 100 6 1392 3778 134 36 53 chr12 105849998 105850700 -15406830 + RMER6C LTR ERVK 1 690 0 6 1392 1121 226 77 104 chr12 105850700 105850824 -15406706 - ORR1E LTR MaLR -260 99 2 6 1392 1590 222 43 3 chr12 105850916 105851264 -15406266 - MTEa LTR MaLR -17 362 1 6 1392 314 209 16 12 chr12 105852219 105852297 -15405233 - ORR1E LTR MaLR -214 145 12 6 1392 195 302 97 75 chr12 105852339 105852432 -15405098 + MIRc SINE MIR 112 206 -62 6 1392 538 321 77 37 chr12 105852565 105852837 -15404693 + MLT1K LTR MaLR 149 431 -164 6 1392 415 282 141 8 chr12 105853651 105853859 -15403671 - MT2A LTR ERVL 0 567 297 6 1392 237 65 0 0 chr12 105854058 105854089 -15403441 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1392 309 188 43 14 chr12 105854090 105854160 -15403370 - B4A SINE B4 -23 269 198 6 1392 449 276 57 8 chr12 105854198 105854322 -15403208 - B4A SINE B4 -162 130 1 6 1392 549 228 183 18 chr12 105854659 105854769 -15402761 + Lx8 LINE L1 7217 7333 -140 6 1392 336 127 0 0 chr12 105854769 105854824 -15402706 + (TATG)n Simple_repeat Simple_repeat 1 55 0 6 1392 549 228 183 18 chr12 105854824 105854932 -15402598 + Lx8 LINE L1 7334 7470 -3 6 1392 557 198 0 38 chr12 105855021 105855126 -15402404 + PB1D10 SINE Alu 2 102 -15 6 1392 911 89 0 7 chr12 105856013 105856149 -15401381 + (TCTCC)n Simple_repeat Simple_repeat 5 139 0 6 1392 1027 122 0 11 chr12 105856177 105856351 -15401179 + (TTTCC)n Simple_repeat Simple_repeat 4 175 0 6 1392 692 55 11 11 chr12 105856351 105856443 -15401087 - RMER16 LTR ERVK -82 451 360 6 1392 2846 112 107 11 chr12 105856505 105856982 -15400548 - Lx LINE L1 0 6654 6132 6 1392 227 280 81 36 chr12 105857073 105857184 -15400346 + MLT1A0 LTR MaLR 247 362 -3 6 1392 206 288 34 6 chr12 105857946 105858044 -15399486 + L2b LINE L2 3284 3386 -1 6 1392 1032 239 71 30 chr12 105858071 105858144 -15399386 + B4 SINE B4 1 80 -212 6 1392 510 17 0 0 chr12 105858144 105858203 -15399327 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1392 1032 239 71 30 chr12 105858203 105858338 -15399192 + B4 SINE B4 81 216 -76 6 1392 275 0 29 0 chr12 105858338 105858373 -15399157 + (CAA)n Simple_repeat Simple_repeat 2 37 0 6 1392 1032 239 71 30 chr12 105858373 105858430 -15399100 + B4 SINE B4 217 277 -15 6 1392 879 179 0 0 chr12 105858458 105858637 -15398893 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1392 481 199 6 38 chr12 105858667 105858850 -15398680 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 1392 706 177 42 21 chr12 105860311 105860455 -15397075 - RLTR42-int LTR ERVK -4714 808 662 6 1392 381 43 0 0 chr12 105860457 105860504 -15397026 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 6 1392 754 76 254 0 chr12 105860504 105860622 -15396908 - B1_Mus1 SINE Alu 0 148 1 6 1392 643 298 10 16 chr12 105860627 105860821 -15396709 - RLTR42-int LTR ERVK -4856 666 474 6 1392 519 285 65 78 chr12 105860895 105861188 -15396342 - RLTR42-int LTR ERVK -5200 322 34 6 1392 220 234 0 0 chr12 105861414 105861461 -15396069 + T-rich Low_complexity Low_complexity 1 47 0 6 1392 617 156 0 111 chr12 105861478 105861658 -15395872 - Lx4A LINE L1 -3 7055 6896 6 1392 299 339 117 18 chr12 105863916 105864087 -15393443 - MER5A DNA MER1_type 0 189 2 6 1392 600 300 89 65 chr12 105864625 105864996 -15392534 - MLT1C LTR MaLR -44 423 44 6 1392 14940 141 21 24 chr12 105865170 105867939 -15389591 + Lx5 LINE L1 2811 5570 -307 6 1392 637 111 6 167 chr12 105867937 105868099 -15389431 - L1_Mur2 LINE L1 -1008 4869 4734 6 1392 3316 164 35 41 chr12 105868099 105868789 -15388741 + Lx5 LINE L1 5587 6250 -800 6 1392 233 182 18 0 chr12 105868789 105868844 -15388686 + CT-rich Low_complexity Low_complexity 2 57 0 6 1392 910 297 106 3 chr12 105868845 105869156 -15388374 - MTEb-int LTR MaLR -1237 343 1 6 1392 564 266 28 31 chr12 105869156 105869406 -15388124 - MTEb-int LTR MaLR -312 1268 1161 6 1392 645 280 35 65 chr12 105869438 105869637 -15387893 - ORR1E LTR MaLR -165 194 2 6 1392 186 103 0 0 chr12 105869944 105869973 -15387557 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1392 1783 232 117 21 chr12 105870011 105870482 -15387048 - MT2A LTR ERVL -17 516 1 6 1392 223 296 27 40 chr12 105870596 105870670 -15386860 + RSINE1 SINE B4 93 165 0 6 1392 195 162 0 0 chr12 105870675 105870712 -15386818 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1392 31 44 0 0 chr12 105870723 105870768 -15386762 + AT_rich Low_complexity Low_complexity 1 45 0 6 1392 641 183 25 25 chr12 105870790 105870908 -15386622 + B1_Mur2 SINE Alu 3 120 -29 6 1392 952 200 38 16 chr12 105870914 105871097 -15386433 - B3 SINE B2 -25 191 5 6 1392 189 0 0 0 chr12 105871963 105871984 -15385546 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1392 21 0 0 0 chr12 105872106 105872127 -15385403 + AT_rich Low_complexity Low_complexity 1 21 0 6 1392 332 220 183 52 chr12 105872729 105872844 -15384686 - L1MEe LINE L1 -4051 803 674 6 1392 512 209 133 28 chr12 105874258 105874401 -15383129 - MER53 DNA hAT -2 191 34 6 1392 216 0 0 0 chr12 105875145 105875169 -15382361 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1392 236 388 0 0 chr12 105876119 105876204 -15381326 + MER82 DNA MER2_type 8 92 -561 6 1392 342 309 140 12 chr12 105876429 105876593 -15380937 + MER82 DNA MER2_type 469 653 0 6 1392 672 276 201 0 chr12 105877022 105877285 -15380245 + MTEa LTR MaLR 2 317 -62 6 1392 2133 265 116 33 chr12 105877323 105877994 -15379536 + MTE-int LTR MaLR 1 727 -853 6 1392 1783 235 118 26 chr12 105877996 105878419 -15379111 + MTE-int LTR MaLR 933 1394 -186 6 1392 229 260 0 88 chr12 105878694 105878734 -15378796 + PB1D10 SINE Alu 45 78 -39 6 1392 1836 160 210 85 chr12 105878734 105878772 -15378758 - MT2A LTR ERVL -2 531 494 6 1392 345 24 0 0 chr12 105878772 105878814 -15378716 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1392 1836 160 210 85 chr12 105878814 105879247 -15378283 - MT2A LTR ERVL -40 493 2 6 1392 253 103 0 0 chr12 105879247 105879286 -15378244 + B1_Mur4 SINE Alu 112 150 0 6 1392 229 301 68 0 chr12 105879544 105879617 -15377913 - MLT1L LTR MaLR -530 80 3 6 1392 291 284 41 91 chr12 105879680 105879901 -15377629 + L1ME4a LINE L1 5685 5894 -230 6 1392 844 289 16 53 chr12 105879992 105880295 -15377235 + B4A SINE B4 1 292 0 6 1392 348 24 0 0 chr12 105880299 105880340 -15377190 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1392 366 226 35 35 chr12 105881040 105881127 -15376403 + PB1D10 SINE Alu 8 94 -23 6 1392 255 276 79 30 chr12 105881127 105881141 -15376389 + ID_B1 SINE B4 89 194 -30 6 1392 309 332 74 82 chr12 105881377 105881744 -15375786 - L1M5 LINE L1 -1218 4928 4565 6 1392 618 343 75 46 chr12 105881973 105882318 -15375212 - MLT1B LTR MaLR -35 355 1 6 1392 359 328 62 0 chr12 105882679 105882807 -15374723 - Tigger7 DNA MER2_type -1 2490 2355 6 1392 384 303 251 12 chr12 105883409 105883583 -15373947 - Tigger7 DNA MER2_type -2145 346 133 6 1392 456 268 58 7 chr12 105883583 105883722 -15373808 + B1F SINE Alu 3 148 -1 6 1392 384 303 251 12 chr12 105883722 105883794 -15373736 - Tigger7 DNA MER2_type -2359 132 42 6 1392 1156 224 0 0 chr12 105884022 105884232 -15373298 - B3 SINE B2 0 216 7 6 1392 639 246 0 0 chr12 105884542 105884721 -15372809 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1392 201 189 0 0 chr12 105886250 105886287 -15371243 - MIRc SINE MIR -120 148 112 6 1392 629 254 148 17 chr12 105886835 105887011 -15370519 + ORR1D2 LTR MaLR 94 292 -78 6 1392 290 263 0 0 chr12 105887028 105887085 -15370445 - B3A SINE B2 -137 61 5 6 1392 894 231 57 8 chr12 105887131 105887393 -15370137 - L1MB7 LINE L1 -334 5850 5576 6 1392 345 198 0 0 chr12 105887520 105887601 -15369929 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1392 843 270 61 21 chr12 105887637 105887917 -15369613 - B4 SINE B4 -1 291 1 6 1392 793 204 0 66 chr12 105888005 105888157 -15369373 + B1_Mur2 SINE Alu 2 143 -6 6 1392 305 247 52 0 chr12 105888177 105888254 -15369276 - MER2 DNA MER2_type -179 166 86 6 1392 180 0 0 0 chr12 105888927 105888947 -15368583 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 6 1392 401 350 71 0 chr12 105889562 105889745 -15367785 + LTR16A LTR ERVL 136 331 -120 6 1392 218 105 26 0 chr12 105889810 105889848 -15367682 + (GGGA)n Simple_repeat Simple_repeat 2 40 0 6 1392 629 291 127 50 chr12 105890078 105890338 -15367192 - B4A SINE B4 -12 280 1 6 1392 189 365 52 10 chr12 105890455 105890552 -15366978 - MIRm SINE MIR -4 272 172 6 1392 2259 304 77 49 chr12 105890748 105891742 -15365788 - Tigger1 DNA MER2_type -856 1562 542 6 1392 608 309 141 102 chr12 105891825 105892091 -15365439 - MLT2B3 LTR ERVL -15 541 235 6 1392 434 18 0 18 chr12 105892091 105892147 -15365383 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 6 1392 608 336 40 111 chr12 105892147 105892392 -15365138 - MLT2B3 LTR ERVL -320 234 10 6 1392 279 236 0 0 chr12 105892449 105892521 -15365009 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1392 1388 188 48 140 chr12 105892791 105893212 -15364318 - ORR1C2 LTR MaLR 0 384 3 6 1392 823 242 11 182 chr12 105893967 105894117 -15363413 + ID_B1 SINE B4 5 142 -82 6 1392 690 249 71 28 chr12 105894117 105894299 -15363231 + B3A SINE B2 2 191 -7 6 1392 823 242 11 182 chr12 105894299 105894411 -15363119 + ID_B1 SINE B4 143 222 -2 6 1392 1754 138 19 164 chr12 105894408 105894834 -15362696 + ORR1B1 LTR MaLR 31 394 0 6 1392 230 360 98 53 chr12 105894957 105895036 -15362494 - Charlie15a DNA MER1_type -64 160 79 6 1392 1701 169 134 16 chr12 105895036 105895409 -15362121 - MTD LTR MaLR -2 417 1 6 1392 230 360 98 53 chr12 105895409 105895461 -15362069 - Charlie15a DNA MER1_type -146 78 23 6 1392 450 53 0 0 chr12 105895683 105895740 -15361790 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1392 2346 138 8 11 chr12 105897881 105898246 -15359284 - ORR1B2 LTR MaLR -3 364 1 6 1392 492 288 53 36 chr12 105898649 105898915 -15358615 + L1MD2 LINE L1 5762 6030 -149 6 1392 284 316 34 63 chr12 105899025 105899231 -15358299 + L1MD3 LINE L1 7784 7983 -12 6 1392 642 307 66 83 chr12 105900073 105900421 -15357109 - ORR1E LTR MaLR -17 342 1 6 1392 552 15 0 0 chr12 105901287 105901352 -15356178 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1392 391 237 0 21 chr12 105901893 105902035 -15355495 + GA-rich Low_complexity Low_complexity 3 141 0 6 1392 435 298 197 29 chr12 105902094 105902443 -15355087 - RMER20B LTR ERVK -25 602 165 6 1392 669 264 89 72 chr12 105902595 105902832 -15354698 - B4A SINE B4 -49 243 3 6 1392 189 300 107 16 chr12 105903593 105903715 -15353815 - MIRb SINE MIR -102 166 34 6 1392 1283 92 11 11 chr12 105904709 105904896 -15352634 - B2_Mm2 SINE B2 -2 193 7 6 1392 235 206 60 121 chr12 105904824 105904907 -15352623 - B4 SINE B4 -214 78 1 7 1392 274 306 129 0 chr12 105905015 105905100 -15352430 + PB1D10 SINE Alu 11 106 -11 7 1392 977 266 57 28 chr12 105905118 105905400 -15352130 + B4A SINE B4 2 291 -1 7 1392 583 263 6 13 chr12 105905402 105905560 -15351970 + HAL1-2a_MD LINE L1 2345 2501 -523 7 1392 267 304 37 95 chr12 105905562 105905751 -15351779 + MLT1B LTR MaLR 181 358 -32 7 1393 792 244 49 16 chr12 105906544 105906727 -15350803 - B3 SINE B2 -25 191 3 7 1393 381 270 79 125 chr12 105906785 105907001 -15350529 + MTE2b LTR MaLR 37 242 -137 7 1393 2618 60 25 0 chr12 105907496 105907815 -15349715 + ORR1A2 LTR MaLR 1 327 0 7 1393 210 321 51 2 chr12 105909643 105909727 -15347803 + MIRm SINE MIR 81 165 -97 7 1393 641 76 11 0 chr12 105910343 105910435 -15347095 + (TC)n Simple_repeat Simple_repeat 1 93 0 7 1393 225 94 0 0 chr12 105910435 105910466 -15347064 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1393 396 243 0 0 chr12 105910466 105910577 -15346953 + (TG)n Simple_repeat Simple_repeat 2 112 0 7 1393 533 283 144 23 chr12 105910610 105910867 -15346663 - B4A SINE B4 -4 288 1 7 1393 540 89 0 0 chr12 105911038 105911117 -15346413 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1393 315 71 0 0 chr12 105911591 105911633 -15345897 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 7 1393 857 269 46 56 chr12 105912432 105912716 -15344814 + B4 SINE B4 8 288 -4 7 1393 465 298 29 58 chr12 105913707 105913914 -15343616 + HAL1-2a_MD LINE L1 2327 2527 -497 7 1393 324 0 0 0 chr12 105914104 105914140 -15343390 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1393 232 280 153 48 chr12 105916228 105916457 -15341073 - L2c LINE L2 -179 3208 2956 7 1393 522 0 0 0 chr12 105916680 105916738 -15340792 + (TCC)n Simple_repeat Simple_repeat 1 58 0 7 1393 197 0 71 0 chr12 105917197 105917225 -15340305 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 7 1393 198 150 0 0 chr12 105918559 105918599 -15338931 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1393 939 224 124 45 chr12 105918689 105918956 -15338574 - MTE2a LTR MaLR -3 376 89 7 1393 295 243 10 83 chr12 105919094 105919287 -15338243 + G-rich Low_complexity Low_complexity 1 179 0 7 1393 392 324 233 13 chr12 105919291 105919763 -15337767 + MLT1E1 LTR MaLR 78 653 -1 7 1393 321 263 13 39 chr12 105920916 105921005 -15336525 + BC1_Mm scRNA scRNA 4 90 -62 7 1393 1054 271 124 16 chr12 105921080 105921402 -15336128 - MTE2a LTR MaLR -8 371 15 7 1393 2299 130 39 3 chr12 105921515 105921878 -15335652 + ORR1C1 LTR MaLR 1 376 -2 7 1393 716 236 232 0 chr12 105922338 105922571 -15334959 + B4 SINE B4 2 288 -4 7 1393 205 298 56 36 chr12 105923080 105923183 -15334347 + L2b LINE L2 3237 3374 -52 7 1393 209 89 16 82 chr12 105925263 105925324 -15332206 + GA-rich Low_complexity Low_complexity 6 62 0 7 1393 414 0 0 0 chr12 105928310 105928356 -15329174 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1393 621 0 0 0 chr12 105930106 105930175 -15327355 + (TCCC)n Simple_repeat Simple_repeat 3 71 0 7 1393 257 304 105 18 chr12 105931636 105931750 -15325780 - MIR3 SINE MIR -90 178 55 7 1393 26 30 0 0 chr12 105936500 105936533 -15320997 + AT_rich Low_complexity Low_complexity 1 33 0 7 1393 851 268 5 10 chr12 105936548 105936744 -15320786 + B3 SINE B2 1 195 -21 7 1393 811 159 36 14 chr12 105936819 105936959 -15320571 - B1_Mur1 SINE Alu -1 148 6 7 1393 445 272 62 93 chr12 105936820 105936982 -15320548 - B4 SINE B4 -69 223 67 7 1393 360 0 0 0 chr12 105937181 105937221 -15320309 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1393 245 192 0 19 chr12 105937589 105937642 -15319888 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1393 237 303 15 0 chr12 105940296 105940362 -15317168 + MIR SINE MIR 77 143 -65 7 1393 191 278 47 85 chr12 105941698 105941804 -15315726 + MIRm SINE MIR 102 203 -73 7 1393 494 181 17 25 chr12 105942765 105942884 -15314646 + Lx9 LINE L1 7526 7643 -1 7 1393 272 74 115 19 chr12 105943827 105943896 -15313634 + RMER17B LTR ERVK 408 512 -377 7 1393 24 32 0 0 chr12 105944212 105944243 -15313287 + AT_rich Low_complexity Low_complexity 1 31 0 7 1393 244 279 47 19 chr12 105945924 105946030 -15311500 - RSINE1 SINE B4 -14 151 43 7 1393 679 244 14 65 chr12 105947240 105947455 -15310075 + B3 SINE B2 5 208 -8 7 1393 307 200 42 14 chr12 105948236 105948307 -15309223 - ID2 SINE ID -3 80 8 7 1393 22 35 0 0 chr12 105948375 105948404 -15309126 + AT_rich Low_complexity Low_complexity 1 29 0 7 1393 257 279 48 78 chr12 105950099 105950266 -15307264 - L1MC4 LINE L1 -443 7599 7438 7 1393 445 194 25 85 chr12 105950648 105950766 -15306764 + PB1D10 SINE Alu 6 116 -1 7 1393 958 285 49 22 chr12 105951913 105952279 -15305251 + MTEa LTR MaLR 1 376 -3 7 1393 203 54 81 0 chr12 105952881 105952918 -15304612 + (CGGA)n Simple_repeat Simple_repeat 2 41 0 7 1393 226 24 0 89 chr12 105953223 105953268 -15304262 + (CAGAGA)n Simple_repeat Simple_repeat 3 43 0 7 1393 346 285 179 7 chr12 105953273 105953418 -15304112 - B3 SINE B2 -42 174 5 7 1393 772 59 244 0 chr12 105953439 105953558 -15303972 + B1_Mus1 SINE Alu 1 148 0 7 1393 32 0 0 0 chr12 105953558 105953590 -15303940 + AT_rich Low_complexity Low_complexity 1 32 0 7 1393 615 276 63 119 chr12 105953677 105954121 -15303409 - MTD LTR MaLR 0 419 1 7 1393 192 111 0 0 chr12 105955805 105955841 -15301689 + (CAA)n Simple_repeat Simple_repeat 2 37 0 7 1393 605 277 154 17 chr12 105956798 105957154 -15300376 + L1MD3 LINE L1 7319 7723 -272 7 1393 267 184 270 9 chr12 105957494 105957609 -15299921 + L1MD3 LINE L1 7897 7984 -11 7 1393 381 315 64 18 chr12 105958464 105958635 -15298895 + MIR3 SINE MIR 17 195 -13 7 1393 299 226 23 35 chr12 105959371 105959458 -15298072 - MER21B LTR ERV1 -172 691 606 7 1393 332 318 73 48 chr12 105959529 105959694 -15297836 - MER21B LTR ERV1 -494 369 201 7 1393 411 273 70 0 chr12 105961265 105961393 -15296137 + B4 SINE B4 70 206 -86 7 1393 771 158 30 0 chr12 105961283 105961416 -15296114 + B1_Mur2 SINE Alu 6 142 -7 7 1393 240 59 0 0 chr12 105961423 105961457 -15296073 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1393 450 214 43 45 chr12 105962457 105962621 -15294909 - B3 SINE B2 -1 194 34 7 1393 414 190 12 23 chr12 105963219 105963305 -15294225 - B3A SINE B2 -113 85 1 7 1393 1023 184 18 22 chr12 105963459 105963681 -15293849 - L1Md_F2 LINE L1 -4 6578 6358 7 1393 300 212 197 33 chr12 105963805 105963927 -15293603 - MTE2a LTR MaLR 0 379 238 7 1393 1283 266 64 15 chr12 105964378 105964419 -15293111 - MTE2b LTR MaLR -19 360 320 7 1393 3202 54 18 0 chr12 105964419 105964808 -15292722 - MTA_Mm LTR MaLR 0 396 1 7 1393 1283 266 64 15 chr12 105964808 105965109 -15292421 - MTE2b LTR MaLR -60 319 1 7 1393 2146 135 93 33 chr12 105965434 105965831 -15291699 - MTC LTR MaLR 0 421 1 7 1393 2334 138 54 27 chr12 105966037 105966485 -15291045 - RMER4A LTR ERVK 0 466 7 7 1393 23 0 0 0 chr12 105966922 105966945 -15290585 + AT_rich Low_complexity Low_complexity 1 23 0 7 1393 673 236 28 7 chr12 105967086 105967231 -15290299 + B3 SINE B2 14 161 -55 7 1393 192 152 0 0 chr12 105970519 105970552 -15286978 + (CATA)n Simple_repeat Simple_repeat 2 34 0 7 1393 227 239 108 11 chr12 105970909 105971002 -15286528 - B4A SINE B4 -7 285 184 7 1393 292 298 21 81 chr12 105971241 105971427 -15286103 + RMER15 LTR ERVL 336 510 -65 7 1393 243 312 44 9 chr12 105971625 105971738 -15285792 - B4A SINE B4 -174 118 2 7 1393 579 303 144 35 chr12 105973059 105973551 -15283979 - L1MA9 LINE L1 -67 6224 5679 7 1393 265 264 52 67 chr12 105973700 105973834 -15283696 + L1MC4 LINE L1 7817 7948 -94 7 1393 444 85 36 12 chr12 105973882 105973965 -15283565 + (TATG)n Simple_repeat Simple_repeat 2 86 0 7 1393 21 57 0 0 chr12 105974107 105974142 -15283388 + AT_rich Low_complexity Low_complexity 1 35 0 7 1393 22 35 0 0 chr12 105975414 105975443 -15282087 + AT_rich Low_complexity Low_complexity 1 29 0 7 1393 570 194 194 0 chr12 105977455 105977579 -15279951 - B1_Mus1 SINE Alu 0 148 1 7 1393 701 212 63 157 chr12 105978309 105978594 -15278936 - RMER13B LTR ERVK -534 374 134 7 1393 1258 38 0 0 chr12 105978651 105978811 -15278719 + B2_Mm1a SINE B2 2 161 -32 7 1393 639 0 0 0 chr12 105978812 105978883 -15278647 + (GAAA)n Simple_repeat Simple_repeat 1 71 0 7 1393 444 228 98 0 chr12 105980100 105980223 -15277307 + MER67C LTR ERV1 577 711 0 7 1393 1258 111 22 0 chr12 105980676 105980856 -15276674 - B2_Mm2 SINE B2 -7 188 5 7 1393 374 257 35 91 chr12 105981059 105981256 -15276274 + MER34A LTR ERV1 1 186 -356 7 1393 492 297 66 55 chr12 105981460 105981749 -15275781 + B4A SINE B4 1 292 0 7 1393 276 287 176 13 chr12 105982744 105982903 -15274627 + L1MC4 LINE L1 7460 7644 -398 7 1393 23 86 0 0 chr12 105983132 105983190 -15274340 + AT_rich Low_complexity Low_complexity 1 58 0 7 1393 1724 123 93 7 chr12 105983357 105983659 -15273871 + ORR1B1 LTR MaLR 59 386 -8 7 1393 970 128 48 12 chr12 105983667 105983833 -15273697 + Lx7 LINE L1 7506 7677 -19 7 1393 1227 28 7 0 chr12 105984103 105984246 -15273284 + B1_Mus1 SINE Alu 5 148 0 7 1393 518 176 124 16 chr12 105984810 105984931 -15272599 + B1_Mur2 SINE Alu 15 148 -1 7 1393 277 232 29 14 chr12 105985004 105985074 -15272456 - ID4 SINE ID -11 72 2 7 1393 386 39 19 0 chr12 105986725 105986777 -15270753 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1393 296 285 85 37 chr12 105987102 105987266 -15270264 + L1MB3 LINE L1 5618 5789 -382 8 1393 356 246 155 48 chr12 105987535 105987826 -15269704 + L1MB3 LINE L1 5805 6126 -57 8 1393 232 312 12 24 chr12 105988440 105988452 -15269078 + ID_B1 SINE B4 69 102 -122 8 1393 272 250 0 0 chr12 105988452 105988508 -15269022 + PB1D10 SINE Alu 1 56 -61 8 1393 232 312 12 24 chr12 105988508 105988522 -15269008 + ID_B1 SINE B4 103 149 -75 8 1393 213 170 0 54 chr12 105990032 105990088 -15267442 + (CCG)n Simple_repeat Simple_repeat 2 54 0 8 1393 182 37 37 0 chr12 105990129 105990156 -15267374 + (CCGCG)n Simple_repeat Simple_repeat 5 32 0 8 1393 407 206 93 0 chr12 105991007 105991104 -15266426 - PB1D9 SINE Alu -3 117 12 8 1393 1087 82 0 20 chr12 105991104 105991253 -15266277 + B1_Mus2 SINE Alu 2 147 0 8 1393 297 0 0 0 chr12 105991337 105991370 -15266160 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 8 1393 868 167 7 0 chr12 105991370 105991508 -15266022 - B1_Mur3 SINE Alu -10 139 1 8 1393 222 222 26 77 chr12 105991538 105991616 -15265914 + PB1D10 SINE Alu 28 101 -16 8 1393 238 105 36 62 chr12 105991620 105991732 -15265798 + (TATATG)n Simple_repeat Simple_repeat 5 113 0 8 1393 199 123 11 80 chr12 105991755 105991843 -15265687 + (TA)n Simple_repeat Simple_repeat 2 83 0 8 1393 412 283 267 15 chr12 105992917 105993179 -15264351 + L1MC4 LINE L1 7042 7369 -673 8 1393 462 47 31 0 chr12 105993307 105993371 -15264159 + B2_Mm2 SINE B2 3 68 -127 8 1393 225 0 0 0 chr12 105993601 105993626 -15263904 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1393 250 294 14 67 chr12 105993693 105993898 -15263632 + L1MC LINE L1 5123 5324 -822 8 1393 794 203 60 45 chr12 105993955 105994156 -15263374 + B3 SINE B2 3 206 -10 8 1393 210 171 0 0 chr12 105995144 105995185 -15262345 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1393 292 343 42 28 chr12 105996326 105996470 -15261060 + ORR1E LTR MaLR 52 197 -162 8 1393 1481 191 63 44 chr12 105996605 105996933 -15260597 + ORR1D1 LTR MaLR 1 341 -33 8 1393 4826 124 16 10 chr12 105996933 105997664 -15259866 + RMER19A LTR ERVK 1 736 -1 8 1393 1481 191 63 44 chr12 105997664 105997702 -15259828 + ORR1D1 LTR MaLR 342 374 0 8 1393 235 169 0 33 chr12 105998063 105998124 -15259406 - B2_Mm2 SINE B2 0 195 137 8 1393 1291 90 11 0 chr12 105998208 105998385 -15259145 - B2_Mm1t SINE B2 -14 179 1 8 1393 666 226 10 70 chr12 105998426 105998626 -15258904 - B4A SINE B4 -4 288 101 8 1393 876 230 62 9 chr12 105998688 105998899 -15258631 - ID_B1 SINE B4 -1 223 2 8 1393 2945 154 62 9 chr12 105999269 105999834 -15257696 - RLTR17 LTR ERVK 0 692 98 8 1393 229 156 250 0 chr12 105999855 105999919 -15257611 + B4 SINE B4 1 80 -212 8 1393 362 200 14 0 chr12 105999893 105999963 -15257567 + RSINE1 SINE B4 56 126 -39 8 1393 261 0 0 0 chr12 106000054 106000083 -15257447 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1393 186 71 0 0 chr12 106000207 106000235 -15257295 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 2 1393 213 341 158 7 chr12 106000322 106000345 -15257185 - B4A SINE B4 -46 246 87 3 1393 491 234 9 43 chr12 106000345 106000461 -15257069 - PB1D9 SINE Alu -7 113 2 4 1393 477 0 0 0 chr12 106000609 106000662 -15256868 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1393 1070 88 0 13 chr12 106000960 106001109 -15256421 + B1_Mus2 SINE Alu 1 147 0 6 1393 213 0 53 26 chr12 106001112 106001150 -15256380 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1393 348 64 0 0 chr12 106001258 106001305 -15256225 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1393 642 264 24 6 chr12 106002751 106002915 -15254615 + B3 SINE B2 47 213 -3 9 1393 202 150 31 62 chr12 106002927 106002991 -15254539 + T-rich Low_complexity Low_complexity 3 64 0 1 1393 973 82 0 64 chr12 106002992 106003148 -15254382 - B1_Mus1 SINE Alu 0 148 3 1 1393 277 269 132 19 chr12 106003148 106003254 -15254276 - PB1D7 SINE Alu -1 119 2 1 1393 368 206 14 0 chr12 106005268 106005341 -15252189 + PB1D10 SINE Alu 25 98 -19 1 1393 328 323 129 51 chr12 106006060 106006494 -15251036 + HAL1 LINE L1 613 1080 -1427 1 1393 300 27 0 0 chr12 106006910 106006947 -15250583 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1 1393 510 253 233 0 chr12 106007192 106007338 -15250192 + B3A SINE B2 3 182 -16 1 1393 22 0 0 0 chr12 106007357 106007379 -15250151 + AT_rich Low_complexity Low_complexity 1 22 0 1 1393 895 250 111 23 chr12 106008020 106008327 -15249203 + MTEb LTR MaLR 46 379 0 1 1393 223 270 55 83 chr12 106008457 106008566 -15248964 + MIR SINE MIR 19 124 -84 1 1393 1089 65 0 0 chr12 106008647 106008785 -15248745 - B1_Mus2 SINE Alu -9 138 1 2 1393 216 308 132 0 chr12 106010368 106010459 -15247071 - MIR SINE MIR -65 143 41 2 1393 239 262 0 0 chr12 106011748 106011809 -15245721 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1393 264 154 40 8 chr12 106011822 106011946 -15245584 + (TA)n Simple_repeat Simple_repeat 2 129 0 2 1393 252 77 0 0 chr12 106012426 106012465 -15245065 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 2 1393 254 250 29 0 chr12 106013952 106014020 -15243510 + B1F SINE Alu 80 149 0 2 1393 239 174 22 0 chr12 106014068 106014114 -15243416 + ID4_ SINE ID 36 82 -1 2 1393 1135 91 67 11 chr12 106014214 106014392 -15243138 + B2_Mm2 SINE B2 4 191 -4 2 1393 290 274 79 16 chr12 106015529 106015655 -15241875 + MIRb SINE MIR 23 156 -112 2 1393 402 284 239 0 chr12 106016581 106016749 -15240781 + ID_B1 SINE B4 7 214 -10 2 1393 641 168 7 58 chr12 106018111 106018250 -15239280 - URR1A DNA MER1_type -14 212 81 2 1393 284 70 0 23 chr12 106021216 106021260 -15236270 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1393 281 153 14 0 chr12 106021437 106021509 -15236021 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1393 315 219 12 24 chr12 106021526 106021610 -15235920 + HAL1-3A_ME LINE L1 1980 2062 -796 3 1393 546 116 35 0 chr12 106021640 106021726 -15235804 + B1_Mus1 SINE Alu 1 89 -59 3 1393 537 16 0 0 chr12 106021726 106021788 -15235742 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 3 1393 407 197 29 86 chr12 106021788 106021840 -15235690 + B1F SINE Alu 91 131 -18 3 1393 1495 195 116 48 chr12 106022590 106023005 -15234525 + RLTR20B3 LTR ERVK 93 535 -42 3 1393 282 250 13 40 chr12 106023149 106023224 -15234306 + polypyrimidine Low_complexity Low_complexity 3 75 0 3 1393 260 279 69 56 chr12 106024086 106024230 -15233300 + MIRb SINE MIR 42 187 -81 3 1393 565 321 64 40 chr12 106024409 106024659 -15232871 - B4A SINE B4 0 292 37 3 1393 1932 124 59 3 chr12 106024659 106024982 -15232548 - ORR1A1 LTR MaLR 0 346 6 3 1393 8792 124 50 36 chr12 106024987 106026108 -15231422 - ORR1A1-int LTR MaLR 0 1963 877 3 1393 243 0 0 0 chr12 106026108 106026135 -15231395 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1393 1067 73 0 0 chr12 106026135 106026272 -15231258 - B1_Mus2 SINE Alu -10 137 1 4 1393 8792 124 50 36 chr12 106026272 106026802 -15230728 - ORR1A1-int LTR MaLR -1087 876 290 3 1393 933 266 28 12 chr12 106027665 106027912 -15229618 + B4A SINE B4 24 274 -18 4 1393 382 242 29 59 chr12 106028685 106028821 -15228709 + MER5A1 DNA MER1_type 33 164 -2 4 1393 337 119 169 0 chr12 106028939 106028998 -15228532 - RMER1A Other Other -169 861 793 4 1393 1208 97 32 0 chr12 106028998 106029184 -15228346 - B2_Mm1a SINE B2 -1 192 1 4 1393 182 33 0 62 chr12 106029322 106029354 -15228176 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4 1393 252 0 0 0 chr12 106029424 106029452 -15228078 + (TTTTTG)n Simple_repeat Simple_repeat 6 33 0 4 1393 1139 62 7 0 chr12 106029452 106029598 -15227932 - B1_Mus2 SINE Alu 0 147 1 4 1393 180 196 21 21 chr12 106029726 106029773 -15227757 - MIR3 SINE MIR -47 161 115 4 1393 215 339 8 74 chr12 106030289 106030410 -15227120 - MIR SINE MIR -5 257 145 5 1393 237 65 0 0 chr12 106030957 106030988 -15226542 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1393 698 180 16 8 chr12 106030990 106031119 -15226411 - B1_Mur1 SINE Alu -3 146 17 5 1393 381 290 42 90 chr12 106030994 106031138 -15226392 - B4 SINE B4 -73 219 83 5 1393 630 222 78 133 chr12 106031135 106031353 -15226177 - B4A SINE B4 -62 230 25 5 1393 231 261 99 22 chr12 106032441 106032532 -15224998 - MIRc SINE MIR -110 166 61 5 1393 197 257 42 14 chr12 106033557 106033628 -15223902 - MIRb SINE MIR -145 123 51 5 1393 373 348 75 16 chr12 106033733 106034094 -15223436 - L1MB7 LINE L1 -3 6175 5796 5 1393 615 14 0 0 chr12 106034851 106034923 -15222607 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1393 1874 158 14 45 chr12 106035447 106035805 -15221725 + Lx5 LINE L1 6688 7034 -16 5 1393 252 0 0 0 chr12 106035805 106035833 -15221697 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 5 1393 211 164 182 0 chr12 106036596 106036651 -15220879 - B1_Mus2 SINE Alu -1 146 82 6 1393 509 141 0 8 chr12 106036706 106036803 -15220727 - B1_Mus2 SINE Alu -22 95 3 6 1393 687 251 86 0 chr12 106036943 106037118 -15220412 - B3A SINE B2 -8 190 1 6 1393 240 182 0 22 chr12 106037159 106037204 -15220326 + MER20 DNA MER1_type 34 77 -142 6 1394 219 146 0 0 chr12 106037409 106037450 -15220080 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1394 542 305 52 7 chr12 106037476 106037631 -15219899 + RSINE1 SINE B4 4 165 0 6 1394 935 201 18 81 chr12 106037694 106037916 -15219614 - B3 SINE B2 -1 215 8 6 1394 593 258 48 11 chr12 106037931 106038119 -15219411 - B3A SINE B2 -3 195 1 6 1394 232 289 53 107 chr12 106038314 106038558 -15218972 + ORR1E LTR MaLR 88 318 -41 6 1394 978 276 19 8 chr12 106039109 106039375 -15218155 + B4 SINE B4 5 273 -19 6 1394 306 0 0 0 chr12 106039389 106039423 -15218107 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1394 292 235 106 0 chr12 106039467 106039552 -15217978 - MIR3 SINE MIR -42 166 73 7 1394 637 197 209 22 chr12 106041407 106041589 -15215941 + B3 SINE B2 1 216 0 7 1394 322 297 0 7 chr12 106042297 106042587 -15214943 + (CATA)n Simple_repeat Simple_repeat 1 287 0 7 1394 216 0 0 0 chr12 106042592 106042616 -15214914 + (TC)n Simple_repeat Simple_repeat 1 24 0 7 1394 594 28 0 0 chr12 106042616 106042687 -15214843 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1394 450 289 33 26 chr12 106043220 106043373 -15214157 + B4A SINE B4 1 154 -138 7 1394 338 302 0 65 chr12 106043639 106043650 -15213880 - PB1D10 SINE Alu -1 116 106 7 1394 1168 62 0 0 chr12 106043650 106043796 -15213734 - B1_Mm SINE Alu 0 147 2 7 1394 354 257 27 45 chr12 106043796 106043908 -15213622 - B1F SINE Alu -12 105 1 7 1394 1053 253 21 31 chr12 106044361 106044647 -15212883 + B4A SINE B4 1 283 -9 7 1394 231 36 0 0 chr12 106044669 106044697 -15212833 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1394 328 326 0 10 chr12 106045612 106045711 -15211819 - L1MC LINE L1 -2248 5634 5537 8 1394 420 37 0 0 chr12 106045754 106045808 -15211722 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1394 429 214 0 0 chr12 106046095 106046193 -15211337 + (TCCA)n Simple_repeat Simple_repeat 1 98 0 8 1394 324 0 0 0 chr12 106047249 106047285 -15210245 + (GGGTG)n Simple_repeat Simple_repeat 5 40 0 8 1394 2115 183 124 89 chr12 106047526 106048062 -15209468 + Lx9 LINE L1 6950 7499 -145 8 1394 423 0 0 0 chr12 106048062 106048109 -15209421 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1394 2115 183 124 89 chr12 106048109 106048243 -15209287 + Lx9 LINE L1 7500 7642 -2 8 1394 671 254 36 72 chr12 106048664 106048859 -15208671 - B3A SINE B2 -7 188 1 8 1394 373 269 186 41 chr12 106048864 106049058 -15208472 - ID_B1 SINE B4 -2 222 1 8 1394 702 165 0 15 chr12 106049289 106049424 -15208106 - URR1B DNA MER1_type -10 215 83 8 1394 292 266 148 31 chr12 106050383 106050511 -15207019 + MER20 DNA MER1_type 10 152 -67 6 1394 193 282 124 26 chr12 106050659 106050772 -15206758 + MIRb SINE MIR 70 193 -75 8 1394 696 269 117 40 chr12 106051511 106051809 -15205721 + MER2 DNA MER2_type 25 345 0 9 1394 247 308 135 0 chr12 106053206 106053310 -15204220 + PB1D7 SINE Alu 2 119 -1 9 1394 711 191 0 0 chr12 106053311 106053458 -15204072 + GA-rich Low_complexity Low_complexity 2 148 0 9 1394 294 303 31 68 chr12 106053517 106053708 -15203822 + ORR1E LTR MaLR 2 185 -174 9 1394 413 356 59 74 chr12 106054073 106054343 -15203187 + B4A SINE B4 27 292 0 9 1394 243 352 0 0 chr12 106054350 106054441 -15203089 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 9 1394 225 281 0 0 chr12 106054450 106054546 -15202984 + (CA)n Simple_repeat Simple_repeat 1 96 0 9 1394 450 255 0 0 chr12 106054583 106054736 -15202794 + (CA)n Simple_repeat Simple_repeat 1 153 0 9 1394 386 220 32 135 chr12 106054917 106055043 -15202487 + MLT1J2 LTR MaLR 64 176 -272 9 1394 318 297 50 0 chr12 106055518 106055619 -15201911 - MER81 DNA AcHobo -1 113 8 9 1394 250 231 0 0 chr12 106055637 106055689 -15201841 + G-rich Low_complexity Low_complexity 1 52 0 9 1394 325 336 134 0 chr12 106056413 106056547 -15200983 - MIR SINE MIR -108 154 3 1 1394 261 188 0 0 chr12 106056880 106056928 -15200602 + PB1 SINE Alu 1 48 -79 1 1394 229 250 0 19 chr12 106056976 106057029 -15200501 + ID2 SINE ID 1 52 -31 1 1394 235 321 90 71 chr12 106057599 106057854 -15199676 + MLT1J LTR MaLR 9 268 -244 1 1394 186 143 0 0 chr12 106058517 106058552 -15198978 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 1 1394 219 267 0 0 chr12 106059132 106059207 -15198323 + (TATG)n Simple_repeat Simple_repeat 3 77 0 1 1394 238 320 0 0 chr12 106059230 106059305 -15198225 + (TATG)n Simple_repeat Simple_repeat 1 75 0 1 1394 180 219 0 0 chr12 106059313 106059354 -15198176 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 1 1394 526 265 54 188 chr12 106059363 106059698 -15197832 - B4 SINE B4 -2 290 1 1 1394 204 341 0 35 chr12 106059916 106060001 -15197529 - MIRb SINE MIR -99 169 88 1 1394 288 120 0 0 chr12 106060098 106060148 -15197382 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1394 366 129 0 0 chr12 106062558 106062620 -15194910 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1394 281 226 20 70 chr12 106062623 106062723 -15194807 + Tigger9b DNA MER2_type 204 298 -326 1 1394 500 313 33 82 chr12 106062679 106062982 -15194548 + MLT1B LTR MaLR 31 318 -72 1 1394 355 280 33 53 chr12 106063032 106063183 -15194347 + Tigger9b DNA MER2_type 355 502 -122 1 1394 1468 165 147 21 chr12 106063183 106063517 -15194013 + RMER1B Other Other 691 1066 0 1 1394 620 271 121 77 chr12 106063814 106064086 -15193444 - B4A SINE B4 -6 286 3 1 1394 287 318 0 0 chr12 106064098 106064161 -15193369 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 1 1394 252 0 0 0 chr12 106064162 106064190 -15193340 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 1 1394 835 229 6 16 chr12 106064190 106064372 -15193158 - B3A SINE B2 -18 180 1 1 1394 529 325 31 25 chr12 106064424 106064539 -15192991 - RMER30 DNA MER1_type -1 201 86 1 1394 311 0 0 25 chr12 106064539 106064579 -15192951 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1394 529 325 31 25 chr12 106064579 106064659 -15192871 - RMER30 DNA MER1_type -117 85 6 1 1394 409 206 0 0 chr12 106065757 106065830 -15191700 + ID4 SINE ID 1 73 -10 1 1394 504 0 0 0 chr12 106065835 106065891 -15191639 + (CCA)n Simple_repeat Simple_repeat 3 58 0 1 1394 361 238 113 78 chr12 106067563 106067796 -15189734 + RLTR13D3 LTR ERVK 943 1114 0 1 1394 330 80 0 0 chr12 106067934 106067984 -15189546 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1394 333 341 170 50 chr12 106069166 106069549 -15187981 + MER82 DNA MER2_type 97 525 -128 1 1394 537 235 17 0 chr12 106069585 106069704 -15187826 - RSINE1 SINE B4 -33 132 12 1 1394 291 28 0 0 chr12 106069709 106069745 -15187785 + (CAGT)n Simple_repeat Simple_repeat 2 37 0 1 1394 449 144 51 25 chr12 106069753 106069910 -15187620 + CT-rich Low_complexity Low_complexity 1 161 0 1 1394 511 190 48 13 chr12 106069923 106070220 -15187310 + CT-rich Low_complexity Low_complexity 1 307 0 1 1394 826 218 24 58 chr12 106070299 106070504 -15187026 + B3A SINE B2 1 198 0 1 1394 1322 122 11 0 chr12 106070654 106070842 -15186688 - B2_Mm1t SINE B2 -2 191 2 1 1394 1655 27 5 0 chr12 106070995 106071182 -15186348 + B2_Mm1t SINE B2 1 188 -5 1 1394 986 261 97 86 chr12 106072207 106072537 -15184993 + MTE2a LTR MaLR 3 335 -44 1 1394 1102 116 0 0 chr12 106072537 106072683 -15184847 - B1_Mus1 SINE Alu 0 148 3 1 1394 986 261 97 86 chr12 106072683 106072725 -15184805 + MTE2a LTR MaLR 336 379 0 1 1394 297 278 246 36 chr12 106073516 106073654 -15183876 + MLT2D LTR ERVL 21 187 -227 1 1394 414 0 0 0 chr12 106073678 106073724 -15183806 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1394 216 231 39 0 chr12 106074011 106074063 -15183467 + (CGTG)n Simple_repeat Simple_repeat 2 55 0 1 1394 342 80 0 0 chr12 106074376 106074426 -15183104 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1394 265 258 73 36 chr12 106074442 106074579 -15182951 - Lx7 LINE L1 -329 7367 7226 1 1394 230 265 18 0 chr12 106074592 106074662 -15182868 - Lx7 LINE L1 -453 7243 7178 1 1394 396 238 41 39 chr12 106074706 106074889 -15182641 - L1MB8 LINE L1 -372 5870 5690 1 1394 201 138 0 0 chr12 106075607 106075636 -15181894 + (GGGAGA)n Simple_repeat Simple_repeat 3 31 0 1 1394 708 143 0 0 chr12 106075677 106075831 -15181699 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 1394 292 314 42 0 chr12 106075831 106075949 -15181581 + MER20 DNA MER1_type 38 160 -59 1 1394 230 329 90 28 chr12 106077981 106078125 -15179405 + MLT1D LTR MaLR 183 335 -170 1 1394 363 96 0 0 chr12 106078238 106078290 -15179240 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1394 210 145 0 61 chr12 106078916 106078982 -15178548 + CT-rich Low_complexity Low_complexity 2 63 0 1 1394 425 309 26 39 chr12 106080091 106080265 -15177265 - MLT1D LTR MaLR -17 488 292 1 1394 495 330 82 61 chr12 106080389 106080731 -15176799 + ORR1E LTR MaLR 5 353 -6 1 1394 591 316 105 8 chr12 106080734 106080973 -15176557 + B4A SINE B4 8 269 -23 1 1394 324 0 0 0 chr12 106081318 106081354 -15176176 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1394 359 302 33 8 chr12 106081412 106081532 -15175998 - B4A SINE B4 -169 123 1 1 1394 410 371 96 47 chr12 106081970 106082357 -15175173 + MLT1J LTR MaLR 104 509 -3 1 1394 737 199 0 34 chr12 106082907 106083053 -15174477 - B1_Mus2 SINE Alu -6 141 1 1 1394 181 255 94 21 chr12 106083631 106083727 -15173803 + MER5A DNA MER1_type 39 141 -48 1 1394 225 0 0 0 chr12 106084218 106084243 -15173287 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 1 1394 295 241 45 22 chr12 106084633 106084722 -15172808 + RSINE1 SINE B4 47 137 -28 1 1394 851 234 158 8 chr12 106085800 106086054 -15171476 + B4A SINE B4 1 292 0 1 1394 692 194 11 7 chr12 106086057 106086330 -15171200 + (CA)n Simple_repeat Simple_repeat 1 274 0 1 1394 1186 225 134 15 chr12 106086842 106087171 -15170359 + MTEa LTR MaLR 1 368 -11 1 1394 653 255 94 131 chr12 106089362 106089574 -15167956 - B4 SINE B4 -2 290 87 1 1394 351 0 0 0 chr12 106089574 106089613 -15167917 + (CTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1394 653 255 94 131 chr12 106089613 106089698 -15167832 - B4 SINE B4 -206 86 4 1 1394 21 57 0 0 chr12 106089714 106089749 -15167781 + AT_rich Low_complexity Low_complexity 1 35 0 1 1394 608 241 67 33 chr12 106090801 106090981 -15166549 + RMER30 DNA MER1_type 16 201 -1 1 1394 252 249 232 17 chr12 106091203 106091440 -15166090 + HAL1 LINE L1 1060 1347 -1160 1 1394 210 71 0 0 chr12 106091468 106091496 -15166034 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1394 319 349 151 23 chr12 106091561 106092031 -15165499 + HAL1 LINE L1 1563 2092 -415 1 1394 221 283 75 25 chr12 106092808 106092927 -15164603 + MIRb SINE MIR 91 221 -47 1 1394 939 191 114 45 chr12 106093454 106093700 -15163830 - MTD LTR MaLR -155 264 2 1 1394 702 136 11 11 chr12 106094281 106094460 -15163070 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1394 519 165 22 11 chr12 106094478 106094656 -15162874 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1394 274 254 56 63 chr12 106095626 106095752 -15161778 - RMER15 LTR ERVL -11 564 440 1 1394 366 23 0 0 chr12 106096396 106096439 -15161091 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1394 300 284 112 56 chr12 106096580 106096759 -15160771 + L1ME3B LINE L1 5816 6004 -236 1 1394 622 300 46 30 chr12 106098610 106098847 -15158683 + RMER15 LTR ERVL 335 575 0 1 1394 240 35 0 0 chr12 106099038 106099067 -15158463 + (GGA)n Simple_repeat Simple_repeat 2 30 0 1 1394 193 273 55 0 chr12 106099250 106099305 -15158225 + MIRb SINE MIR 45 102 -166 1 1394 654 286 76 86 chr12 106100991 106101411 -15156119 + L1ME3 LINE L1 5727 6142 -20 1 1394 432 0 0 0 chr12 106102363 106102411 -15155119 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1394 333 0 0 0 chr12 106102411 106102447 -15155083 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1394 240 269 0 0 chr12 106102899 106102951 -15154579 + (CACG)n Simple_repeat Simple_repeat 4 55 0 1 1394 236 151 67 15 chr12 106103162 106103304 -15154226 + (CGGG)n Simple_repeat Simple_repeat 1 149 0 1 1394 204 211 0 55 chr12 106103341 106103396 -15154134 + (CGGGG)n Simple_repeat Simple_repeat 3 54 0 1 1394 183 80 0 0 chr12 106103410 106103435 -15154095 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1394 731 242 41 5 chr12 106103922 106104117 -15153413 + ID_B1 SINE B4 3 204 -20 1 1394 504 0 0 0 chr12 106106471 106106527 -15151003 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1394 311 220 75 18 chr12 106106897 106106993 -15150537 - MTEa LTR MaLR -9 370 272 1 1394 468 0 0 0 chr12 106107527 106107579 -15149951 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1394 1138 85 0 0 chr12 106107605 106107746 -15149784 - B1_Mm SINE Alu -5 142 2 1 1394 1514 45 0 22 chr12 106107787 106107970 -15149560 + B2_Mm1t SINE B2 1 179 -14 1 1394 340 222 28 0 chr12 106108037 106108109 -15149421 + PB1D10 SINE Alu 21 94 -23 1 1394 314 256 154 22 chr12 106108230 106108366 -15149164 + L1MDa LINE L1 2348 2501 -4132 1 1394 261 189 0 19 chr12 106108432 106108486 -15149044 - L2b LINE L2 -1 3374 3322 1 1394 279 0 0 0 chr12 106110001 106110032 -15147498 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1394 1160 34 0 76 chr12 106110032 106110178 -15147352 - B1_Mus2 SINE Alu -9 138 1 1 1394 324 281 47 54 chr12 106110362 106110593 -15146937 - MIRb SINE MIR -20 248 19 1 1394 322 214 0 14 chr12 106111902 106111973 -15145557 + ID SINE ID 2 71 -153 1 1394 249 329 0 14 chr12 106111908 106111982 -15145548 + tRNA-Ala-GCY_ tRNA tRNA 1 73 -2 1 1394 1951 166 177 13 chr12 106112338 106112734 -15144796 + RMER6B LTR ERVK 1 461 0 1 1394 245 303 22 11 chr12 106112888 106112978 -15144552 - MLT1H LTR MaLR 0 549 459 1 1394 187 353 24 0 chr12 106113129 106113214 -15144316 + MIRb SINE MIR 33 119 -149 1 1394 236 331 35 41 chr12 106113513 106113658 -15143872 - LTR82B Low_complexity ERVL -508 322 179 1 1394 219 36 0 0 chr12 106115633 106115661 -15141869 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 1 1394 299 195 26 0 chr12 106115662 106115739 -15141791 + CT-rich Low_complexity Low_complexity 3 81 0 1 1394 1005 194 35 65 chr12 106116454 106116685 -15140845 + URR1A DNA MER1_type 1 224 -2 2 1394 1689 168 59 25 chr12 106116914 106117269 -15140261 - ORR1D1 LTR MaLR -7 367 1 2 1394 1073 50 0 0 chr12 106117399 106117538 -15139992 + B1_Mus1 SINE Alu 10 148 0 2 1394 229 269 0 0 chr12 106118949 106119001 -15138529 - ID4_ SINE ID -22 61 10 2 1394 345 260 0 59 chr12 106119023 106119125 -15138405 - PB1D10 SINE Alu -1 116 21 2 1394 906 145 167 6 chr12 106119409 106119589 -15137941 + URR1B DNA MER1_type 1 209 -16 2 1394 180 323 84 21 chr12 106120356 106120451 -15137079 + MIRc SINE MIR 81 181 -87 2 1394 272 263 90 90 chr12 106121022 106121189 -15136341 - MTEa LTR MaLR -15 364 198 2 1394 443 114 23 0 chr12 106121408 106121496 -15136034 + (TCTG)n Simple_repeat Simple_repeat 4 93 0 2 1394 377 244 0 6 chr12 106121529 106121690 -15135840 + (TG)n Simple_repeat Simple_repeat 2 161 0 2 1394 570 216 0 0 chr12 106121705 106121876 -15135654 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 1394 510 217 0 0 chr12 106121891 106122052 -15135478 + (TG)n Simple_repeat Simple_repeat 2 162 0 2 1394 266 234 78 0 chr12 106122055 106122119 -15135411 - ID4_ SINE ID -10 73 5 2 1394 433 321 190 22 chr12 106122133 106122643 -15134887 - L2 LINE L2 -570 2849 2254 2 1394 304 244 93 2 chr12 106122719 106122811 -15134719 - ORR1E LTR MaLR -4 375 260 2 1394 292 180 0 0 chr12 106123021 106123071 -15134459 - MTEa LTR MaLR -324 55 6 2 1394 311 171 13 0 chr12 106123847 106123923 -15133607 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1394 287 214 29 0 chr12 106124681 106124751 -15132779 + PB1D10 SINE Alu 17 88 -29 2 1394 912 264 56 39 chr12 106124774 106125058 -15132472 + B4 SINE B4 2 290 -2 2 1394 234 91 0 0 chr12 106125080 106125113 -15132417 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 2 1394 990 41 60 20 chr12 106125116 106125266 -15132264 - B2_Mm2 SINE B2 -1 194 39 2 1394 1177 255 36 89 chr12 106125636 106126161 -15131369 + Lx9 LINE L1 6969 7465 -179 2 1394 440 59 47 0 chr12 106126164 106126249 -15131281 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 1394 298 275 130 11 chr12 106126819 106126911 -15130619 - PB1 SINE Alu -2 125 23 2 1394 574 290 71 63 chr12 106126951 106127205 -15130325 + B4 SINE B4 1 256 -36 2 1394 257 94 38 0 chr12 106127205 106127258 -15130272 + (TCTCTG)n Simple_repeat Simple_repeat 5 59 0 2 1394 185 338 29 0 chr12 106127590 106127658 -15129872 + L2a LINE L2 3356 3425 -1 2 1394 964 163 59 35 chr12 106128072 106128275 -15129255 - B3 SINE B2 0 216 9 2 1394 216 0 0 0 chr12 106128280 106128304 -15129226 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1394 594 286 138 19 chr12 106128322 106128532 -15128998 + B4 SINE B4 3 237 -55 2 1394 322 282 74 47 chr12 106128869 106129018 -15128512 - HAL1-3A_ME LINE L1 -421 2437 2285 2 1394 204 282 0 0 chr12 106129019 106129097 -15128433 + CT-rich Low_complexity Low_complexity 2 79 0 2 1394 242 271 80 45 chr12 106129271 106129383 -15128147 - L1M3c LINE L1 -4552 1589 1474 2 1394 229 350 80 21 chr12 106129513 106129700 -15127830 - L1ME1 LINE L1 -13 6166 5969 2 1394 3256 69 2 7 chr12 106129994 106130403 -15127127 + MTB_Mm LTR MaLR 1 407 0 2 1394 1457 168 5 172 chr12 106130917 106131313 -15126217 - ORR1C1 LTR MaLR -45 333 4 2 1394 397 210 213 27 chr12 106131337 106131528 -15126002 + L1M5 LINE L1 2972 3229 -2917 2 1394 558 240 67 98 chr12 106131552 106131746 -15125784 - B3A SINE B2 -10 188 1 2 1394 336 24 0 0 chr12 106131812 106131853 -15125677 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1394 295 292 133 11 chr12 106132281 106132382 -15125148 - B1F SINE Alu -8 112 1 2 1394 1350 258 20 85 chr12 106133199 106133601 -15123929 - MTEb LTR MaLR -3 376 1 2 1394 240 340 36 157 chr12 106133601 106133813 -15123717 - MLT1G1 LTR MaLR -385 194 10 2 1394 189 231 39 0 chr12 106134106 106134158 -15123372 + MIRc SINE MIR 181 234 -34 2 1394 533 93 0 0 chr12 106134300 106134375 -15123155 + ORR1A3 LTR MaLR 252 326 0 2 1394 321 26 0 0 chr12 106134514 106134552 -15122978 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 2 1394 324 355 32 0 chr12 106135835 106135959 -15121571 + MIRb SINE MIR 1 128 -140 2 1394 319 305 29 0 chr12 106136317 106136422 -15121108 - MER20 DNA MER1_type -88 131 24 2 1394 288 0 0 0 chr12 106136889 106136921 -15120609 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1394 351 0 0 0 chr12 106136921 106136959 -15120571 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1394 315 105 0 0 chr12 106138403 106138460 -15119070 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 2 1394 488 306 22 0 chr12 106138738 106138872 -15118658 - MER2 DNA MER2_type 0 345 209 2 1394 244 274 142 0 chr12 106140279 106140385 -15117145 + MLT1B LTR MaLR 30 150 -240 2 1394 675 277 37 37 chr12 106140472 106140716 -15116814 - B4A SINE B4 -14 278 35 2 1394 704 271 16 58 chr12 106141085 106141328 -15116202 - MTD LTR MaLR -149 270 38 2 1394 1267 174 14 5 chr12 106141354 106141567 -15115963 - B3 SINE B2 0 216 2 2 1394 212 0 36 0 chr12 106141601 106141629 -15115901 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1394 1007 166 119 10 chr12 106141816 106142017 -15115513 - URR1A DNA MER1_type -2 224 2 2 1394 530 352 88 30 chr12 106142492 106142820 -15114710 - MER21B LTR ERV1 -116 747 401 2 1394 1290 14 0 0 chr12 106143235 106143383 -15114147 + (TCTCCC)n Simple_repeat Simple_repeat 1 148 0 2 1394 382 234 0 0 chr12 106143684 106143761 -15113769 - ID4_ SINE ID 0 83 7 2 1394 269 246 0 40 chr12 106143765 106143841 -15113689 + ID SINE ID 12 84 -140 2 1394 442 96 38 9 chr12 106144166 106144271 -15113259 + (TTCC)n Simple_repeat Simple_repeat 4 111 0 2 1394 816 143 11 17 chr12 106144272 106144450 -15113080 + CT-rich Low_complexity Low_complexity 2 178 0 2 1394 682 216 57 7 chr12 106144484 106144624 -15112906 - B1_Mus2 SINE Alu 0 147 1 2 1394 521 277 233 5 chr12 106144910 106145175 -15112355 + MLT1A0 LTR MaLR 76 357 -17 2 1394 1646 124 17 234 chr12 106145198 106145673 -15111857 - ORR1C1 LTR MaLR -6 372 1 2 1394 405 260 30 0 chr12 106145764 106145864 -15111666 + ID_B1 SINE B4 81 183 -41 2 1394 425 251 6 23 chr12 106145901 106146076 -15111454 + GA-rich Low_complexity Low_complexity 3 174 0 2 1394 700 278 50 65 chr12 106147240 106147517 -15110013 + B4 SINE B4 4 276 -16 2 1394 446 180 10 0 chr12 106147533 106147633 -15109897 + (CA)n Simple_repeat Simple_repeat 1 101 0 2 1394 279 0 0 0 chr12 106147652 106147683 -15109847 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 1394 187 182 32 32 chr12 106147742 106147867 -15109663 + (TA)n Simple_repeat Simple_repeat 2 126 0 2 1394 182 316 50 12 chr12 106148034 106148114 -15109416 + L2b LINE L2 3085 3167 -208 2 1394 362 259 39 6 chr12 106150193 106150292 -15107238 - PB1D10 SINE Alu -17 103 3 2 1394 252 294 0 52 chr12 106150214 106150311 -15107219 - MT2B LTR ERVL -360 241 150 2 1394 450 283 164 48 chr12 106151594 106151783 -15105747 - MER20 DNA MER1_type 0 219 9 2 1394 207 294 0 0 chr12 106152031 106152082 -15105448 + MIRb SINE MIR 125 175 -93 2 1394 2059 131 10 3 chr12 106152582 106152889 -15104641 - RLTR27 LTR ERVK 0 309 1 2 1394 1344 216 38 92 chr12 106152954 106153346 -15104184 + MTE2b LTR MaLR 5 375 -4 2 1394 263 238 56 17 chr12 106154268 106154365 -15103165 - Lx8 LINE L1 -1773 5700 5597 2 1394 315 0 0 0 chr12 106154387 106154422 -15103108 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1394 327 154 0 0 chr12 106154443 106154508 -15103022 + GA-rich Low_complexity Low_complexity 1 65 0 2 1394 691 206 0 0 chr12 106154518 106154644 -15102886 - B1_Mur1 SINE Alu -23 126 1 2 1394 1184 75 0 0 chr12 106155296 106155443 -15102087 + B1_Mus2 SINE Alu 1 147 0 2 1394 237 98 0 0 chr12 106155544 106155585 -15101945 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1394 365 264 46 39 chr12 106155585 106155715 -15101815 - MLT1H LTR MaLR -37 512 382 2 1394 436 326 60 85 chr12 106155765 106155943 -15101587 - MLT1D LTR MaLR -4 501 329 2 1394 567 261 182 0 chr12 106155943 106156119 -15101411 - B3 SINE B2 -7 209 2 2 1394 436 326 60 85 chr12 106156119 106156175 -15101355 - MLT1D LTR MaLR -177 328 273 2 1394 290 367 3 52 chr12 106156201 106156534 -15100996 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 2 1394 711 167 0 62 chr12 106156547 106156739 -15100791 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2 1394 411 189 34 25 chr12 106156769 106157098 -15100432 + (TATG)n Simple_repeat Simple_repeat 1 332 0 2 1394 360 0 0 0 chr12 106157170 106157210 -15100320 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1394 239 275 43 0 chr12 106157859 106157928 -15099602 + MIRm SINE MIR 82 153 -123 2 1394 341 260 167 89 chr12 106158200 106158470 -15099060 + B4A SINE B4 2 292 0 2 1394 919 31 14 92 chr12 106158536 106158678 -15098852 - B1_Mus1 SINE Alu -7 141 11 2 1394 558 215 12 113 chr12 106158678 106158704 -15098826 - B4 SINE B4 -73 219 69 2 1394 257 272 123 0 chr12 106159264 106159345 -15098185 - PB1D7 SINE Alu -27 93 3 2 1394 497 168 0 9 chr12 106160503 106160611 -15096919 + (CAT)n Simple_repeat Simple_repeat 3 109 0 2 1394 464 116 21 21 chr12 106160638 106160735 -15096795 + CT-rich Low_complexity Low_complexity 1 97 0 2 1394 321 250 25 12 chr12 106160735 106160816 -15096714 - ID4_ SINE ID -1 82 1 2 1394 265 301 138 46 chr12 106162069 106162309 -15095221 - L1MD3 LINE L1 -4 7991 7730 2 1394 717 113 0 0 chr12 106162807 106162913 -15094617 - B2_Mm2 SINE B2 -88 107 2 2 1394 939 147 46 92 chr12 106162913 106163130 -15094400 - ORR1D1 LTR MaLR -161 213 7 2 1394 248 77 26 0 chr12 106163444 106163483 -15094047 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1394 455 204 0 18 chr12 106164139 106164249 -15093281 + (CATA)n Simple_repeat Simple_repeat 4 111 0 2 1394 225 0 0 0 chr12 106165049 106165074 -15092456 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1394 252 107 79 13 chr12 106166475 106166551 -15090979 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 3 1394 208 154 39 0 chr12 106166558 106166610 -15090920 + CT-rich Low_complexity Low_complexity 1 54 0 3 1394 537 262 0 0 chr12 106167554 106168007 -15089523 + (CA)n Simple_repeat Simple_repeat 1 453 0 3 1395 313 318 13 8 chr12 106168500 106168633 -15088897 + MIR3 SINE MIR 58 187 -21 3 1395 259 222 0 0 chr12 106170467 106170521 -15087009 + (CAG)n Simple_repeat Simple_repeat 1 54 0 3 1395 757 231 220 12 chr12 106170697 106170942 -15086588 + MTE2b LTR MaLR 1 296 -83 3 1395 323 349 67 0 chr12 106171413 106171562 -15085968 + MIRb SINE MIR 89 247 -21 3 1395 569 266 110 16 chr12 106172539 106172730 -15084800 + ID_B1 SINE B4 1 209 -15 3 1395 1545 68 16 0 chr12 106172894 106173086 -15084444 - B2_Mm2 SINE B2 0 195 1 3 1395 238 311 0 22 chr12 106174129 106174313 -15083217 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1395 962 219 54 0 chr12 106174510 106174715 -15082815 + B3 SINE B2 1 216 0 3 1395 232 246 15 30 chr12 106174726 106174793 -15082737 + MTEb LTR MaLR 314 379 0 3 1395 245 233 17 0 chr12 106174970 106175030 -15082500 - MIRm SINE MIR -161 115 55 3 1395 413 273 52 32 chr12 106175046 106175201 -15082329 + MER5A DNA MER1_type 6 163 -26 3 1395 273 391 18 57 chr12 106175188 106175470 -15082060 + LTR55 LTR ERV 20 290 -258 3 1395 331 256 137 15 chr12 106175730 106175793 -15081737 - RMER30 DNA MER1_type -45 157 89 3 1395 909 97 6 29 chr12 106175793 106175963 -15081567 + (GGA)n Simple_repeat Simple_repeat 2 167 0 3 1395 331 256 137 15 chr12 106175963 106176030 -15081500 - RMER30 DNA MER1_type -114 88 11 3 1395 376 281 16 16 chr12 106176801 106176924 -15080606 + ORR1E LTR MaLR 1 123 -236 3 1395 236 222 14 0 chr12 106176951 106177023 -15080507 + CT-rich Low_complexity Low_complexity 6 78 0 3 1395 322 250 48 29 chr12 106177433 106177536 -15079994 + MER94 DNA AcHobo 15 119 -15 3 1395 1047 232 0 37 chr12 106179129 106179344 -15078186 + B3 SINE B2 2 208 -8 3 1395 250 228 18 0 chr12 106179372 106179429 -15078101 - B3 SINE B2 -6 210 153 3 1395 661 249 178 0 chr12 106179510 106179679 -15077851 - B3 SINE B2 -15 201 3 3 1395 271 295 0 13 chr12 106180195 106180274 -15077256 + ID4 SINE ID 2 79 -4 3 1395 264 316 36 50 chr12 106180547 106180687 -15076843 + L1MEg LINE L1 420 557 -5527 3 1395 487 352 102 50 chr12 106180825 106181286 -15076244 + L1MEg LINE L1 734 1218 -4866 3 1395 324 188 0 0 chr12 106182199 106182263 -15075267 + CT-rich Low_complexity Low_complexity 2 65 0 3 1395 1587 204 79 3 chr12 106182348 106182688 -15074842 + ORR1D1 LTR MaLR 1 366 -8 3 1395 6097 72 48 7 chr12 106183457 106184371 -15073159 - RLTR13A2 LTR ERVK 0 958 7 3 1395 180 0 0 0 chr12 106184976 106184996 -15072534 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1395 372 103 44 0 chr12 106185323 106185391 -15072139 - Lx4A LINE L1 -1 7057 6987 3 1395 255 222 37 0 chr12 106185784 106185838 -15071692 + ID4 SINE ID 10 65 -18 3 1395 296 224 11 96 chr12 106185925 106185952 -15071578 + Lx8 LINE L1 6876 6900 -573 3 1395 1232 62 0 0 chr12 106185952 106186098 -15071432 + B1_Mus2 SINE Alu 2 147 0 3 1395 193 29 29 29 chr12 106186101 106186136 -15071394 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 3 1395 296 224 11 96 chr12 106186136 106186198 -15071332 + Lx8 LINE L1 6901 6961 -512 3 1395 1369 221 54 77 chr12 106186198 106186416 -15071114 + ORR1C2 LTR MaLR 1 190 -204 3 1395 749 90 0 9 chr12 106186416 106186528 -15071002 + (TCCC)n Simple_repeat Simple_repeat 3 113 0 3 1395 1369 178 56 35 chr12 106186528 106186725 -15070805 + ORR1C2 LTR MaLR 183 384 0 3 1395 1171 252 78 21 chr12 106186784 106187157 -15070373 + Lx8 LINE L1 7078 7471 -2 3 1395 1912 14 0 0 chr12 106187389 106187611 -15069919 + L1Md_F2 LINE L1 5364 5585 -298 3 1395 8794 22 0 1 chr12 106187612 106188606 -15068924 + L1Md_F2 LINE L1 5587 6579 -3 3 1395 219 125 0 0 chr12 106188635 106188675 -15068855 + (CCCCCT)n Simple_repeat Simple_repeat 1 40 0 3 1395 799 278 70 47 chr12 106189251 106189676 -15067854 + MTE2b LTR MaLR 1 375 -4 3 1395 185 211 88 0 chr12 106189803 106189837 -15067693 - L2c LINE L2 -100 3287 3251 3 1395 2513 74 3 55 chr12 106189837 106190182 -15067348 + ORR1A2 LTR MaLR 1 327 0 3 1395 185 211 88 0 chr12 106190182 106190204 -15067326 - L2c LINE L2 -137 3250 3227 3 1395 207 295 11 64 chr12 106190984 106191078 -15066452 + L2b LINE L2 3265 3353 -22 3 1395 847 203 43 24 chr12 106191891 106192098 -15065432 + MTEa LTR MaLR 9 219 -160 3 1395 597 28 0 0 chr12 106192170 106192241 -15065289 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1395 1352 133 0 138 chr12 106192880 106193141 -15064389 + URR1B DNA MER1_type 1 225 0 3 1395 468 161 106 11 chr12 106194390 106194484 -15063046 + B1_Mur1 SINE Alu 47 149 0 3 1395 276 91 0 0 chr12 106194486 106194530 -15063000 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1395 371 326 79 26 chr12 106194563 106194752 -15062778 + B4A SINE B4 4 202 -90 3 1395 830 90 336 7 chr12 106195184 106195310 -15062220 + B2_Mm2 SINE B2 2 162 -33 3 1395 252 0 0 0 chr12 106195310 106195338 -15062192 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 1395 830 90 336 7 chr12 106195338 106195357 -15062173 + B2_Mm2 SINE B2 163 194 -1 3 1395 288 0 0 0 chr12 106196952 106196984 -15060546 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1395 213 263 35 0 chr12 106198577 106198634 -15058896 - ID4 SINE ID -7 76 18 3 1395 258 352 36 18 chr12 106198979 106199089 -15058441 + MLT1A1 LTR MaLR 296 407 -1 3 1395 197 203 30 8 chr12 106199355 106199417 -15058113 + MIRc SINE MIR 117 181 -27 3 1395 277 234 47 0 chr12 106200100 106200164 -15057366 - ID_B1 SINE B4 -22 202 136 3 1395 335 181 149 0 chr12 106200733 106200827 -15056703 + RMER10A LTR ERVL 322 429 -13 3 1395 396 259 98 15 chr12 106201858 106201991 -15055539 - MIRb SINE MIR -41 227 84 3 1395 480 273 161 34 chr12 106202008 106202065 -15055465 + MTC LTR MaLR 178 233 -188 3 1395 332 43 22 0 chr12 106202065 106202111 -15055419 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1395 480 273 161 34 chr12 106202111 106202258 -15055272 + MTC LTR MaLR 234 407 -14 3 1395 183 330 67 11 chr12 106202972 106203061 -15054469 - MIRb SINE MIR -72 196 103 3 1395 668 217 0 0 chr12 106204077 106204192 -15053338 + B3A SINE B2 1 115 -83 3 1395 483 18 0 0 chr12 106204195 106204251 -15053279 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1395 261 0 0 0 chr12 106204251 106204279 -15053251 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1395 1140 121 65 5 chr12 106204633 106204833 -15052697 + RMER4B LTR ERVK 1 212 -373 3 1395 873 129 0 0 chr12 106204879 106205018 -15052512 + (GGA)n Simple_repeat Simple_repeat 3 141 0 3 1395 675 35 0 0 chr12 106205040 106205126 -15052404 + (GAA)n Simple_repeat Simple_repeat 2 87 0 3 1395 645 215 99 9 chr12 106205148 106205365 -15052165 + RMER4B LTR ERVK 319 572 -13 3 1395 481 255 20 0 chr12 106207021 106207123 -15050407 - B4A SINE B4 -186 106 3 3 1395 351 0 0 0 chr12 106207915 106207954 -15049576 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1395 308 83 21 0 chr12 106208221 106208269 -15049261 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1395 526 286 48 0 chr12 106208275 106208401 -15049129 - RSINE1 SINE B4 -7 158 27 3 1395 813 269 92 32 chr12 106208405 106208769 -15048761 + MTD LTR MaLR 20 379 0 3 1395 328 291 42 68 chr12 106209181 106209299 -15048231 - L1M4b LINE L1 -5458 1876 1762 3 1395 1087 74 0 33 chr12 106209302 106209455 -15048075 - B1_Mus1 SINE Alu 0 148 1 3 1395 932 149 159 5 chr12 106210158 106210347 -15047183 - URR1B DNA MER1_type -5 220 3 3 1395 190 243 80 67 chr12 106210512 106210587 -15046943 - MIR SINE MIR -77 185 110 3 1395 252 0 0 0 chr12 106211513 106211541 -15045989 + (GGA)n Simple_repeat Simple_repeat 1 28 0 3 1395 588 227 0 0 chr12 106211807 106211983 -15045547 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 1395 512 194 6 34 chr12 106211998 106212174 -15045356 + (CATATA)n Simple_repeat Simple_repeat 6 176 0 3 1395 485 218 6 0 chr12 106212164 106212334 -15045196 + (CA)n Simple_repeat Simple_repeat 1 171 0 3 1395 568 219 8 0 chr12 106212367 106212610 -15044920 + (CA)n Simple_repeat Simple_repeat 1 244 0 3 1395 343 155 12 123 chr12 106213033 106213114 -15044416 + MTEa LTR MaLR 4 75 -304 3 1395 649 206 68 7 chr12 106213100 106213271 -15044259 - B3A SINE B2 -33 183 6 3 1395 947 147 28 0 chr12 106213311 106213454 -15044076 - B1_Mur4 SINE Alu -3 147 1 3 1395 192 179 0 0 chr12 106213470 106213509 -15044021 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1395 463 356 22 22 chr12 106213512 106213693 -15043837 - B3A SINE B2 -16 182 2 3 1395 189 0 0 0 chr12 106214183 106214204 -15043326 + (CCA)n Simple_repeat Simple_repeat 1 21 0 3 1395 242 338 27 0 chr12 106215060 106215134 -15042396 - ID4_ SINE ID 0 83 8 3 1395 356 0 23 0 chr12 106215241 106215285 -15042245 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1395 570 112 194 0 chr12 106215471 106215569 -15041961 + B1_Mm SINE Alu 24 140 -7 3 1395 288 241 212 9 chr12 106215473 106215586 -15041944 + B4A SINE B4 111 246 -46 3 1395 240 250 36 0 chr12 106215587 106215643 -15041887 + GA-rich Low_complexity Low_complexity 2 59 0 3 1395 796 229 6 108 chr12 106215668 106215844 -15041686 + B3 SINE B2 32 189 -6 3 1395 453 195 293 18 chr12 106216121 106216288 -15041242 - B3 SINE B2 0 216 4 3 1395 25 51 0 0 chr12 106216294 106216333 -15041197 + AT_rich Low_complexity Low_complexity 1 39 0 3 1395 1451 62 17 0 chr12 106216362 106216538 -15040992 - B2_Mm2 SINE B2 -14 181 3 3 1395 536 355 86 10 chr12 106217582 106217872 -15039658 - Charlie4a DNA MER1_type -172 336 25 3 1395 860 176 52 109 chr12 106217974 106218184 -15039346 + B3 SINE B2 3 200 -16 3 1395 1059 214 74 43 chr12 106218188 106218612 -15038918 + MT2A LTR ERVL 14 554 -47 3 1395 231 235 20 0 chr12 106218612 106218663 -15038867 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 3 1395 190 0 32 32 chr12 106218694 106218725 -15038805 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1395 1094 97 7 0 chr12 106218725 106218869 -15038661 - B1_Mm SINE Alu -2 145 1 4 1395 22 56 0 0 chr12 106218877 106218913 -15038617 + AT_rich Low_complexity Low_complexity 1 36 0 4 1395 953 211 31 16 chr12 106218924 106219117 -15038413 + B3A SINE B2 1 196 -2 4 1395 288 289 39 55 chr12 106219469 106219552 -15037978 - LTR33A_ LTR ERVL -383 148 70 4 1395 2084 172 94 23 chr12 106219552 106219945 -15037585 + MTC LTR MaLR 1 421 0 4 1395 288 289 39 55 chr12 106219945 106219989 -15037541 - LTR33A_ LTR ERVL -462 69 23 4 1395 201 59 0 81 chr12 106220276 106220313 -15037217 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1395 1559 169 134 9 chr12 106220323 106220651 -15036879 + MTD LTR MaLR 46 414 -5 4 1395 327 25 0 0 chr12 106220651 106220691 -15036839 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 4 1395 1095 121 172 35 chr12 106221024 106221222 -15036308 + URR1B DNA MER1_type 1 225 0 4 1395 245 341 130 32 chr12 106221236 106221421 -15036109 - MIR SINE MIR -56 206 4 4 1395 452 198 11 11 chr12 106222404 106222496 -15035034 - B1F2 SINE Alu -18 131 40 4 1395 198 237 0 0 chr12 106222496 106222572 -15034958 + (CCTG)n Simple_repeat Simple_repeat 3 78 0 4 1395 441 290 0 0 chr12 106222678 106222785 -15034745 + ID_B1 SINE B4 82 188 -36 4 1395 324 0 0 0 chr12 106223229 106223265 -15034265 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1395 913 213 60 15 chr12 106223378 106223578 -15033952 + B3 SINE B2 1 209 -7 4 1395 576 0 0 0 chr12 106223605 106223669 -15033861 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1395 428 243 37 46 chr12 106223728 106223836 -15033694 - B4 SINE B4 0 292 186 4 1395 411 279 198 6 chr12 106223891 106224053 -15033477 - B4 SINE B4 -1 291 99 4 1395 373 280 40 56 chr12 106225193 106225318 -15032212 - PB1 SINE Alu -4 123 1 4 1395 211 326 63 49 chr12 106226512 106226654 -15030876 - MIRm SINE MIR -119 157 14 4 1395 216 0 0 0 chr12 106226975 106226999 -15030531 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1395 279 0 0 0 chr12 106227449 106227480 -15030050 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1395 376 231 194 6 chr12 106227535 106227705 -15029825 + L1M4 LINE L1 4852 5053 -1093 4 1395 370 272 65 46 chr12 106227709 106227817 -15029713 + ID_B1 SINE B4 114 223 -1 4 1395 376 184 23 136 chr12 106227809 106227941 -15029589 + MT2B LTR ERVL 152 268 -333 4 1395 709 133 61 23 chr12 106227844 106227975 -15029555 + B1_Mur2 SINE Alu 14 149 0 4 1395 668 274 7 0 chr12 106227986 106228139 -15029391 + RSINE1 SINE B4 12 165 0 4 1395 723 124 0 0 chr12 106228160 106228273 -15029257 + (TAGA)n Simple_repeat Simple_repeat 1 113 0 4 1395 2322 112 15 36 chr12 106228280 106228669 -15028861 + MTB_Mm LTR MaLR 27 407 0 4 1395 227 372 9 9 chr12 106228970 106229084 -15028446 - MIR SINE MIR -116 146 33 4 1395 846 143 21 111 chr12 106229764 106229875 -15027655 + B2_Mm2 SINE B2 3 112 -83 4 1395 1136 73 0 0 chr12 106229875 106230011 -15027519 + B1_Mus1 SINE Alu 1 136 -12 4 1395 384 22 0 0 chr12 106230012 106230057 -15027473 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1395 846 143 21 111 chr12 106230057 106230132 -15027398 + B2_Mm2 SINE B2 113 174 -21 4 1395 192 184 18 109 chr12 106230908 106230963 -15026567 + MIRb SINE MIR 196 245 -23 4 1395 403 337 72 6 chr12 106231190 106231357 -15026173 - MER58A DNA MER1_type -5 219 42 4 1395 285 284 0 0 chr12 106231492 106231566 -15025964 + ID_B1 SINE B4 151 224 0 4 1395 1172 71 0 0 chr12 106231576 106231717 -15025813 + B1_Mus1 SINE Alu 1 141 -7 4 1395 387 92 0 0 chr12 106231718 106231783 -15025747 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1395 21 0 0 0 chr12 106231833 106231854 -15025676 + AT_rich Low_complexity Low_complexity 1 21 0 4 1395 376 253 121 20 chr12 106231881 106232030 -15025500 - B2_Mm2 SINE B2 -31 164 1 4 1395 448 165 244 0 chr12 106232060 106232175 -15025355 + B1_Mus1 SINE Alu 6 148 0 4 1395 734 0 0 11 chr12 106232205 106232292 -15025238 + (GGAGA)n Simple_repeat Simple_repeat 4 89 0 4 1395 247 313 60 0 chr12 106232361 106232444 -15025086 + MIR SINE MIR 57 144 -118 4 1395 219 215 0 72 chr12 106232937 106233018 -15024512 - MIR SINE MIR -121 155 76 4 1395 340 83 50 0 chr12 106234124 106234184 -15023346 + (TATG)n Simple_repeat Simple_repeat 4 66 0 4 1395 295 266 78 97 chr12 106234219 106234373 -15023157 - RSINE1 SINE B4 -8 157 7 4 1395 551 281 88 44 chr12 106234527 106234588 -15022942 + B4 SINE B4 2 62 -230 4 1395 2088 160 12 102 chr12 106234588 106234991 -15022539 + ORR1B2 LTR MaLR 1 367 0 4 1395 551 281 88 44 chr12 106234991 106235134 -15022396 + B4 SINE B4 63 215 -77 4 1395 324 103 0 0 chr12 106235160 106235218 -15022312 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1395 333 0 0 0 chr12 106235479 106235516 -15022014 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1395 559 187 100 43 chr12 106236403 106236543 -15020987 + B1F SINE Alu 1 148 -1 4 1395 372 200 0 14 chr12 106237129 106237200 -15020330 - PB1D7 SINE Alu -38 82 13 4 1395 231 246 0 0 chr12 106237733 106237790 -15019740 - MER113 DNA MER1_type -122 399 343 4 1395 671 212 11 52 chr12 106238104 106238278 -15019252 + ID_B1 SINE B4 2 168 -56 4 1395 251 264 104 78 chr12 106238198 106238313 -15019217 + FAM SINE Alu 144 261 -50 4 1395 457 240 0 20 chr12 106238941 106239043 -15018487 + RSINE1 SINE B4 6 105 -60 4 1395 464 264 94 75 chr12 106240230 106240421 -15017109 + MER2 DNA MER2_type 26 220 -125 4 1395 480 208 21 0 chr12 106240421 106240517 -15017013 + B1F SINE Alu 1 98 -51 4 1395 367 288 36 9 chr12 106240517 106240629 -15016901 + PB1D10 SINE Alu 1 115 -2 4 1395 873 252 23 15 chr12 106240741 106241037 -15016493 + MTEb LTR MaLR 4 357 -22 4 1395 1065 242 0 135 chr12 106242463 106242797 -15014733 + B4 SINE B4 3 291 -1 4 1395 315 0 0 0 chr12 106243119 106243154 -15014376 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1395 231 270 210 0 chr12 106243970 106244070 -15013460 + MIR3 SINE MIR 87 207 -1 4 1395 628 289 0 13 chr12 106244403 106244557 -15012973 + RSINE1 SINE B4 12 163 -2 4 1395 222 337 34 73 chr12 106244557 106244582 -15012948 + B2_Mm2 SINE B2 11 182 -13 4 1395 475 228 17 26 chr12 106244731 106244848 -15012682 + PB1D10 SINE Alu 1 116 -1 4 1395 703 251 16 106 chr12 106244851 106245096 -15012434 + ID_B1 SINE B4 2 224 0 4 1395 901 115 64 7 chr12 106245107 106245227 -15012303 + B1_Mus1 SINE Alu 1 120 -28 4 1395 297 0 0 0 chr12 106245227 106245260 -15012270 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1395 901 115 64 7 chr12 106245260 106245279 -15012251 + B1_Mus1 SINE Alu 121 148 0 4 1395 221 57 0 28 chr12 106248278 106248314 -15009216 + (CGGGG)n Simple_repeat Simple_repeat 1 35 0 4 1395 369 0 0 0 chr12 106249033 106249074 -15008456 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1395 354 168 16 151 chr12 106249823 106249949 -15007581 + MT2B LTR ERVL 156 264 -337 4 1395 816 143 0 0 chr12 106249858 106249984 -15007546 + B1_Mus2 SINE Alu 22 147 0 4 1395 735 289 62 26 chr12 106250485 106250758 -15006772 + B4A SINE B4 4 286 -6 4 1395 188 35 35 0 chr12 106250760 106250789 -15006741 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1395 22 0 0 0 chr12 106250970 106250992 -15006538 + AT_rich Low_complexity Low_complexity 1 22 0 4 1395 319 202 75 43 chr12 106250995 106251088 -15006442 + BC1_Mm scRNA scRNA 5 100 -52 4 1395 360 155 14 27 chr12 106251142 106251215 -15006315 - RSINE1 SINE B4 -83 82 11 4 1395 283 274 15 61 chr12 106252220 106252241 -15005289 - BC1_Mm scRNA scRNA -25 127 107 4 1395 207 0 0 0 chr12 106252241 106252264 -15005266 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1395 283 274 15 61 chr12 106252264 106252374 -15005156 - BC1_Mm scRNA scRNA -46 106 2 4 1395 329 272 85 28 chr12 106252534 106252640 -15004890 - B1F1 SINE Alu -2 147 36 4 1395 23 33 0 0 chr12 106252666 106252696 -15004834 + AT_rich Low_complexity Low_complexity 1 30 0 4 1395 710 236 191 5 chr12 106252717 106253013 -15004517 + MTD LTR MaLR 22 403 -16 4 1395 896 207 17 0 chr12 106253046 106253225 -15004305 + ID_B1 SINE B4 10 191 -33 4 1395 207 0 0 0 chr12 106253236 106253259 -15004271 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1395 1050 252 0 0 chr12 106253508 106253718 -15003812 + B3 SINE B2 2 211 -5 4 1395 1872 210 130 32 chr12 106253768 106254300 -15003230 - RLTR31A_Mm LTR ERVK 0 584 1 4 1395 330 304 108 36 chr12 106254485 106254652 -15002878 - L1MD1 LINE L1 -15 6227 6049 4 1395 422 255 0 0 chr12 106254765 106254859 -15002671 + PB1D10 SINE Alu 21 114 -3 4 1395 257 132 0 0 chr12 106255599 106255637 -15001893 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1395 728 144 17 30 chr12 106255637 106255878 -15001652 + (TATG)n Simple_repeat Simple_repeat 1 237 0 4 1395 858 261 70 46 chr12 106255878 106256163 -15001367 - B4A SINE B4 0 292 1 4 1395 654 114 29 0 chr12 106256201 106256306 -15001224 - B1_Mus1 SINE Alu -1 147 40 4 1395 319 198 72 24 chr12 106256237 106256320 -15001210 - RLTR25B LTR ERVK -516 512 426 4 1395 581 241 247 0 chr12 106256360 106256526 -15001004 - B3 SINE B2 -8 208 2 4 1395 1307 27 0 0 chr12 106256539 106256687 -15000843 - B1_Mus1 SINE Alu 0 148 1 4 1395 281 286 83 67 chr12 106256756 106256876 -15000654 - RSINE1 SINE B4 -42 123 2 4 1395 2178 80 13 7 chr12 106257182 106257484 -15000046 + L1Md_F2 LINE L1 6265 6568 -14 4 1395 276 30 0 0 chr12 106257487 106257520 -15000010 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1395 29 0 0 0 chr12 106258502 106258531 -14998999 + AT_rich Low_complexity Low_complexity 1 29 0 4 1395 439 55 0 5 chr12 106258543 106258608 -14998922 - B2_Mm2 SINE B2 -107 109 47 5 1395 606 309 69 15 chr12 106258575 106258621 -14998909 - B4 SINE B4 -18 274 231 5 1395 1296 107 6 11 chr12 106258621 106258800 -14998730 - B2_Mm1t SINE B2 -14 179 2 5 1395 719 268 80 0 chr12 106258800 106259013 -14998517 - B4A SINE B4 -62 230 1 5 1395 3568 80 24 6 chr12 106259207 106259674 -14997856 + MT2C_Mm LTR ERVL 1 475 0 5 1395 405 0 0 0 chr12 106259711 106259756 -14997774 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1395 378 96 0 0 chr12 106260748 106260818 -14996712 - B1_Mur4 SINE Alu -75 73 4 5 1395 325 89 0 82 chr12 106260766 106260827 -14996703 - ID_B1 SINE B4 -89 135 80 5 1395 263 312 42 0 chr12 106261257 106261353 -14996177 + MER44D DNA MER2_type 153 252 -453 5 1395 657 290 80 0 chr12 106262186 106262386 -14995144 + Tigger7 DNA MER2_type 196 411 -2080 5 1395 545 273 53 21 chr12 106262391 106262578 -14994952 + MER44D DNA MER2_type 474 666 -39 5 1395 922 238 11 0 chr12 106263267 106263456 -14994074 - ID_B1 SINE B4 -18 206 16 5 1395 225 303 0 70 chr12 106263397 106263468 -14994062 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 5 1395 337 231 31 52 chr12 106263823 106263919 -14993611 + PB1D7 SINE Alu 1 94 -33 5 1395 279 0 0 0 chr12 106263935 106263966 -14993564 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1395 435 250 19 0 chr12 106264856 106264964 -14992566 - RSINE1 SINE B4 -47 118 9 5 1395 407 126 31 10 chr12 106264991 106265087 -14992443 + (TA)n Simple_repeat Simple_repeat 2 99 0 5 1395 1332 108 27 0 chr12 106265615 106265801 -14991729 - B2_Mm2 SINE B2 -4 191 1 5 1395 291 274 54 54 chr12 106266994 106267106 -14990424 + PB1D10 SINE Alu 6 117 0 5 1395 639 191 19 4 chr12 106267454 106267622 -14989908 - B3 SINE B2 -3 213 7 5 1395 575 211 37 0 chr12 106268123 106268232 -14989298 - B1_Mur1 SINE Alu -25 124 12 5 1395 459 292 40 9 chr12 106268124 106268290 -14989240 - ID_B1 SINE B4 -23 201 42 5 1395 534 242 284 19 chr12 106268399 106268656 -14988874 + MTEb LTR MaLR 13 337 -42 5 1395 180 77 0 0 chr12 106268848 106268874 -14988656 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 1395 261 299 0 0 chr12 106269803 106269870 -14987660 - ID4 SINE ID -16 67 1 5 1395 364 231 15 114 chr12 106269879 106270011 -14987519 - PB1 SINE Alu -7 120 2 5 1395 227 289 104 13 chr12 106270131 106270208 -14987322 + B4 SINE B4 1 84 -208 5 1395 325 316 10 0 chr12 106272352 106272450 -14985080 + PB1D10 SINE Alu 1 99 -18 5 1395 575 0 74 0 chr12 106273785 106273880 -14983650 + (TG)n Simple_repeat Simple_repeat 2 103 0 5 1395 339 317 167 0 chr12 106274262 106274442 -14983088 - MER58A DNA MER1_type -12 212 3 5 1395 411 341 62 14 chr12 106274797 106275005 -14982525 + MIR SINE MIR 16 244 -24 5 1395 725 269 129 12 chr12 106275757 106275998 -14981532 - B4A SINE B4 -17 275 7 5 1395 218 208 0 0 chr12 106276030 106276078 -14981452 + T-rich Low_complexity Low_complexity 1 48 0 5 1395 354 246 18 96 chr12 106276350 106276464 -14981066 + B1F SINE Alu 16 120 0 5 1395 250 260 40 30 chr12 106276754 106276853 -14980677 + MTE2a LTR MaLR 226 325 -54 5 1395 189 94 0 0 chr12 106277759 106277791 -14979739 + (ACCTG)n Simple_repeat Simple_repeat 2 33 0 5 1395 423 0 0 0 chr12 106277847 106277894 -14979636 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1395 476 309 56 46 chr12 106279220 106279417 -14978113 - ID_B1 SINE B4 -21 203 5 5 1395 444 324 0 63 chr12 106280774 106280932 -14976598 - B3A SINE B2 -49 149 2 5 1395 820 215 91 161 chr12 106281268 106281657 -14975873 + ORR1E LTR MaLR 1 373 -6 5 1395 644 296 208 8 chr12 106282478 106282873 -14974657 + MLT1D LTR MaLR 30 503 -2 5 1395 531 0 0 0 chr12 106282885 106282944 -14974586 + (TTTTG)n Simple_repeat Simple_repeat 3 61 0 5 1395 187 79 26 26 chr12 106283629 106283668 -14973862 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 5 1395 409 212 0 0 chr12 106284056 106284122 -14973408 - RSINE1 SINE B4 -68 97 32 5 1395 3313 129 136 21 chr12 106284769 106285388 -14972142 - RMER6C LTR ERVK 0 690 1 5 1395 3524 34 53 0 chr12 106285717 106285920 -14971610 - RLTR10C LTR ERVK 0 436 234 5 1395 387 0 0 0 chr12 106285920 106285963 -14971567 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1395 3524 34 53 0 chr12 106285963 106286173 -14971357 - RLTR10C LTR ERVK -203 233 2 5 1395 493 288 145 52 chr12 106286242 106286608 -14970922 - RMER10A LTR ERVL -25 417 18 5 1395 1027 212 83 10 chr12 106287573 106287887 -14969643 + MYSERV16_I-int LTR ERVK 1990 2326 0 5 1395 2872 153 52 13 chr12 106287887 106288385 -14969145 + RLTR31B_Mm LTR ERVK 1 514 -43 5 1395 200 59 29 0 chr12 106288385 106288419 -14969111 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1395 1236 28 0 0 chr12 106288421 106288562 -14968968 - B1_Mus2 SINE Alu -6 141 1 5 1395 2872 153 52 13 chr12 106288562 106288596 -14968934 + RLTR31B_Mm LTR ERVK 515 551 -6 5 1395 324 0 0 0 chr12 106288850 106288886 -14968644 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1395 859 121 34 34 chr12 106288996 106289142 -14968388 + B1_Mus1 SINE Alu 3 148 0 5 1395 323 259 47 12 chr12 106289640 106289726 -14967804 + MIRm SINE MIR 82 170 -106 5 1395 334 211 137 0 chr12 106289906 106290001 -14967529 + Lx7 LINE L1 5925 6032 -1664 5 1395 480 230 0 0 chr12 106290001 106290228 -14967302 + (CA)n Simple_repeat Simple_repeat 1 227 0 5 1395 329 125 0 0 chr12 106290228 106290276 -14967254 + HAL1-3A_ME LINE L1 1975 2022 -836 5 1395 5847 208 100 32 chr12 106290288 106291496 -14966034 + Lx7 LINE L1 6031 7354 -342 5 1395 192 77 0 0 chr12 106291496 106291522 -14966008 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1395 5847 208 100 32 chr12 106291522 106291682 -14965848 + Lx7 LINE L1 7355 7512 -184 5 1395 269 26 26 0 chr12 106291682 106291720 -14965810 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1395 5847 208 100 32 chr12 106291720 106291753 -14965777 + Lx7 LINE L1 7513 7543 -153 5 1395 234 0 0 0 chr12 106291753 106291779 -14965751 + (TTA)n Simple_repeat Simple_repeat 2 27 0 5 1395 5847 208 100 32 chr12 106291779 106291932 -14965598 + Lx7 LINE L1 7544 7692 -4 5 1395 1141 52 0 0 chr12 106292168 106292303 -14965227 - B1_Mus2 SINE Alu -11 136 2 5 1395 1469 178 157 12 chr12 106292360 106292684 -14964846 + ORR1C1 LTR MaLR 5 375 -3 5 1395 188 333 36 24 chr12 106292861 106292944 -14964586 + MIRb SINE MIR 145 228 -40 5 1395 300 27 0 0 chr12 106293060 106293097 -14964433 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 5 1395 375 233 58 0 chr12 106293097 106293183 -14964347 - B1F SINE Alu -14 135 45 5 1395 366 240 94 65 chr12 106293972 106294110 -14963420 + MLT1G3 LTR MaLR 71 212 -300 5 1395 207 339 0 0 chr12 106294275 106294331 -14963199 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1395 324 275 13 195 chr12 106294331 106294557 -14962973 - B4A SINE B4 0 292 108 5 1395 310 188 83 73 chr12 106295149 106295258 -14962272 + RMER10A LTR ERVL 318 427 -15 5 1395 255 292 168 9 chr12 106295276 106295383 -14962147 + MLT1G3-int LTR MaLR 471 594 -815 5 1395 881 261 23 0 chr12 106295433 106295651 -14961879 - ID_B1 SINE B4 0 224 2 5 1395 1108 77 28 0 chr12 106295683 106295826 -14961704 - B1_Mus1 SINE Alu 0 148 2 5 1395 363 289 69 8 chr12 106295926 106296081 -14961449 + MLT1G3-int LTR MaLR 765 1005 -484 5 1395 441 286 89 22 chr12 106296087 106296266 -14961264 - RMER15 LTR ERVL -15 560 370 5 1395 581 230 6 0 chr12 106296302 106296480 -14961050 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1395 1352 246 83 13 chr12 106296769 106297106 -14960424 - MTEa LTR MaLR -1 373 19 5 1395 441 293 46 63 chr12 106297247 106297422 -14960108 + MLT1G3-int LTR MaLR 1235 1406 -3 5 1395 1076 261 30 51 chr12 106297450 106297537 -14959993 + B4 SINE B4 2 86 -206 5 1395 1438 51 23 0 chr12 106297537 106297714 -14959816 + B2_Mm2 SINE B2 1 181 -14 5 1395 1248 64 79 28 chr12 106297715 106297892 -14959638 + B2_Mm2 SINE B2 1 186 -9 5 1395 1076 261 30 51 chr12 106297892 106298097 -14959433 + B4 SINE B4 87 290 -2 5 1395 509 309 125 64 chr12 106298116 106298151 -14959379 + MLT1G3 LTR MaLR 37 71 -524 5 1395 324 0 0 0 chr12 106298151 106298187 -14959343 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 1395 198 0 0 0 chr12 106298187 106298208 -14959322 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1395 509 311 147 65 chr12 106298208 106298590 -14958940 + MLT1G3 LTR MaLR 72 438 -141 5 1395 534 265 31 50 chr12 106298603 106298815 -14958715 - MTEb LTR MaLR 0 379 150 5 1396 367 298 0 42 chr12 106300335 106300454 -14957076 + PB1D10 SINE Alu 3 116 -1 5 1396 307 189 38 75 chr12 106300563 106300643 -14956887 + B4A SINE B4 42 118 -174 5 1396 500 278 105 0 chr12 106301141 106301274 -14956256 - ID_B1 SINE B4 -19 205 59 5 1396 441 0 0 0 chr12 106302308 106302357 -14955173 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1396 540 156 165 131 chr12 106302464 106302670 -14954860 - B3 SINE B2 0 216 4 5 1396 214 290 82 27 chr12 106303175 106303285 -14954245 + L2 LINE L2 2195 2310 -1109 5 1396 1659 235 8 48 chr12 106303442 106303818 -14953712 - ORR1D2 LTR MaLR -1 369 9 5 1396 722 281 50 18 chr12 106304045 106304266 -14953264 + RMER5 LTR ERV1 303 530 -4 5 1396 1573 206 125 3 chr12 106304689 106305050 -14952480 - MTD LTR MaLR -14 405 1 5 1396 348 187 0 0 chr12 106305408 106305452 -14952078 + polypurine Low_complexity Low_complexity 1 44 0 5 1396 315 0 0 0 chr12 106305452 106305487 -14952043 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1396 348 187 0 0 chr12 106305487 106305533 -14951997 + polypurine Low_complexity Low_complexity 45 90 0 5 1396 244 263 6 39 chr12 106306588 106306770 -14950760 + (TATG)n Simple_repeat Simple_repeat 3 178 0 5 1396 1046 255 189 17 chr12 106306807 106307156 -14950374 + MTD LTR MaLR 5 405 -14 5 1396 2467 63 38 0 chr12 106307673 106307988 -14949542 - ORR1A2 LTR MaLR 0 327 1 5 1396 486 215 145 22 chr12 106308545 106308683 -14948847 - MLT1F LTR MaLR 0 548 394 5 1396 413 262 38 0 chr12 106308895 106309014 -14948516 + MTD LTR MaLR 256 405 -14 5 1396 4216 196 35 74 chr12 106309610 106310379 -14947151 + L1_Mur3 LINE L1 878 1668 -2230 5 1396 189 107 0 0 chr12 106310379 106310407 -14947123 + (CAA)n Simple_repeat Simple_repeat 3 30 0 5 1396 4216 185 33 96 chr12 106310407 106311171 -14946359 + L1_Mur3 LINE L1 1669 2332 -1566 5 1396 1187 62 7 0 chr12 106311313 106311458 -14946072 - B1_Mus2 SINE Alu 0 147 2 5 1396 480 18 0 0 chr12 106311515 106311572 -14945958 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 5 1396 436 214 48 10 chr12 106311594 106311698 -14945832 - PB1D10 SINE Alu -9 108 1 5 1396 688 291 71 38 chr12 106311749 106311988 -14945542 + MER58B DNA MER1_type 79 325 -16 6 1396 306 231 85 62 chr12 106312268 106312397 -14945133 + B1_Mur1 SINE Alu 15 146 -3 6 1396 439 268 35 30 chr12 106312292 106312444 -14945086 + ID_B1 SINE B4 118 274 -18 6 1396 466 200 29 20 chr12 106313151 106313253 -14944277 - RLTR23 LTR ERV1 -5 425 323 6 1396 293 236 32 58 chr12 106313606 106313711 -14943819 + MIRm SINE MIR 85 180 -88 6 1396 423 0 0 0 chr12 106314506 106314553 -14942977 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1396 275 347 72 8 chr12 106314774 106314899 -14942631 - MIRb SINE MIR -73 195 63 6 1396 297 0 0 0 chr12 106315320 106315353 -14942177 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1396 881 72 7 0 chr12 106315359 106315498 -14942032 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 6 1396 534 202 152 23 chr12 106315646 106315778 -14941752 - B1_Mur1 SINE Alu 0 149 1 6 1396 2921 48 72 18 chr12 106316349 106316735 -14940795 - MTB_Mm LTR MaLR 0 407 1 6 1396 204 229 33 0 chr12 106317045 106317106 -14940424 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1396 404 278 101 19 chr12 106317120 106317325 -14940205 - B4A SINE B4 -22 270 1 6 1396 216 0 0 0 chr12 106317403 106317427 -14940103 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1396 406 330 90 37 chr12 106317456 106317645 -14939885 - B4 SINE B4 0 292 94 6 1396 595 169 34 65 chr12 106317529 106317652 -14939878 - B1_Mur4 SINE Alu 0 120 3 6 1396 589 214 30 30 chr12 106317627 106317670 -14939860 - B1_Mur2 SINE Alu -9 140 99 6 1396 342 0 0 0 chr12 106317670 106317708 -14939822 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1396 589 214 30 30 chr12 106317708 106317799 -14939731 - B1_Mur2 SINE Alu -51 98 6 6 1396 1443 83 0 5 chr12 106317817 106318010 -14939520 - B2_Mm2 SINE B2 -1 194 3 6 1396 677 253 56 0 chr12 106318023 106318185 -14939345 - B4 SINE B4 -73 219 49 6 1396 1262 115 16 16 chr12 106318297 106318482 -14939048 + B2_Mm2 SINE B2 2 186 -9 6 1396 241 0 103 0 chr12 106318598 106318637 -14938893 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 6 1396 1303 27 0 0 chr12 106318637 106318783 -14938747 - B1_Mm SINE Alu 0 147 2 6 1396 263 229 213 0 chr12 106318789 106318911 -14938619 - ORSL-2b DNA Tip100 -289 219 72 6 1396 1734 165 156 106 chr12 106319011 106319100 -14938430 + RLTR20C LTR ERVK 1 89 -445 6 1396 1404 90 0 5 chr12 106319100 106319290 -14938240 - B2_Mm2 SINE B2 -6 189 1 6 1396 1734 177 145 105 chr12 106319290 106319708 -14937822 + RLTR20C LTR ERVK 90 498 -7 6 1396 608 261 71 18 chr12 106319695 106319863 -14937667 + B4 SINE B4 112 288 -4 6 1396 2732 92 142 2 chr12 106319944 106320367 -14937163 + RLTR45 LTR ERVK 1 482 0 6 1396 486 0 0 0 chr12 106320862 106320916 -14936614 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1396 647 142 15 77 chr12 106321056 106321186 -14936344 - B1_Mur3 SINE Alu -1 148 27 6 1396 1141 57 0 0 chr12 106321187 106321327 -14936203 - B2_Mm2 SINE B2 -55 140 1 6 1396 240 344 45 83 chr12 106321968 106322101 -14935429 - MIR SINE MIR -44 218 91 6 1396 351 202 0 0 chr12 106322126 106322210 -14935320 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1396 4851 192 72 91 chr12 106323461 106323820 -14933710 + RLTR21 LTR ERVK 2 371 -1201 6 1396 1179 82 0 0 chr12 106323820 106323967 -14933563 + B1_Mus2 SINE Alu 1 147 0 6 1396 4851 192 72 91 chr12 106323967 106324470 -14933060 + RLTR21 LTR ERVK 372 857 -715 6 1396 948 102 57 14 chr12 106324470 106324610 -14932920 + B1_Mus2 SINE Alu 2 147 0 6 1396 4851 192 72 91 chr12 106324610 106324880 -14932650 + RLTR21 LTR ERVK 858 1123 -449 6 1396 474 18 0 0 chr12 106324880 106324935 -14932595 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1396 4851 192 72 91 chr12 106324935 106325049 -14932481 + RLTR21 LTR ERVK 1124 1232 -340 6 1396 207 0 0 0 chr12 106325049 106325072 -14932458 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 6 1396 4851 192 72 91 chr12 106325072 106325148 -14932382 + RLTR21 LTR ERVK 1233 1301 -271 6 1396 1673 162 99 29 chr12 106325351 106325733 -14931797 - RMER17C LTR ERVK -1 409 1 6 1396 240 333 23 11 chr12 106325915 106326003 -14931527 + ORR1E LTR MaLR 3 91 -268 6 1396 722 228 56 39 chr12 106326050 106326228 -14931302 + B3A SINE B2 2 182 -16 6 1396 514 281 71 7 chr12 106326813 106326953 -14930577 + ID_B1 SINE B4 1 149 -75 6 1396 491 239 91 177 chr12 106326961 106327069 -14930461 + B3A SINE B2 2 126 -72 6 1396 1416 81 11 0 chr12 106327069 106327254 -14930276 - B2_Mm2 SINE B2 -6 189 3 6 1396 491 239 91 177 chr12 106327254 106327343 -14930187 + B3A SINE B2 127 182 -16 6 1396 27 0 0 0 chr12 106327359 106327386 -14930144 + AT_rich Low_complexity Low_complexity 1 27 0 6 1396 305 264 42 0 chr12 106327423 106327495 -14930035 + ID_B1 SINE B4 148 222 -2 6 1396 471 273 64 7 chr12 106327948 106328088 -14929442 - MLT1A0 LTR MaLR 0 365 218 6 1396 279 0 0 0 chr12 106328123 106328154 -14929376 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1396 1779 246 19 0 chr12 106328299 106328661 -14928869 + MTE2a LTR MaLR 9 377 -2 6 1396 773 288 98 34 chr12 106328661 106328955 -14928575 + MER2 DNA MER2_type 32 344 -1 6 1396 630 318 96 32 chr12 106328978 106329290 -14928240 - MLT2B2 LTR ERVL -58 457 126 6 1396 720 239 30 12 chr12 106329466 106329635 -14927895 - B3 SINE B2 -44 172 1 6 1396 589 295 34 4 chr12 106329681 106329943 -14927587 - L1MB3 LINE L1 -86 6097 5828 6 1396 1189 246 107 31 chr12 106329949 106330305 -14927225 - MTD LTR MaLR -2 417 35 6 1396 906 109 76 0 chr12 106330307 106330462 -14927068 - URR1B DNA MER1_type 0 225 45 6 1396 771 268 21 4 chr12 106330530 106330770 -14926760 - L1MB3 LINE L1 -380 5791 5548 6 1396 293 264 110 47 chr12 106331291 106331418 -14926112 - Charlie19a DNA Charlie -59 327 193 6 1396 365 70 0 81 chr12 106331655 106331717 -14925813 + B1_Mur3 SINE Alu 86 142 -7 6 1396 218 156 22 0 chr12 106331717 106331762 -14925768 + GA-rich Low_complexity Low_complexity 1 46 0 6 1396 323 227 48 120 chr12 106331831 106331956 -14925574 + MLT1F1 LTR MaLR 202 317 -231 6 1396 447 329 57 19 chr12 106331961 106332172 -14925358 - MLT1D LTR MaLR -7 498 280 6 1396 642 274 0 0 chr12 106332193 106332328 -14925202 + RSINE1 SINE B4 2 136 -29 6 1396 419 245 20 80 chr12 106332416 106332567 -14924963 + ORR1E LTR MaLR 54 195 -164 6 1396 403 305 20 41 chr12 106333003 106333150 -14924380 + MLT1F1 LTR MaLR 354 497 -72 6 1396 190 327 84 56 chr12 106333186 106333293 -14924237 + MIRb SINE MIR 101 210 -58 6 1396 745 208 8 0 chr12 106333355 106333485 -14924045 - ID_B1 SINE B4 -10 214 84 6 1396 1032 294 71 17 chr12 106333575 106333928 -14923602 - MTE2b LTR MaLR -7 372 1 6 1396 1201 278 38 41 chr12 106334043 106334410 -14923120 + MT2A LTR ERVL 92 457 -76 6 1396 1353 73 39 16 chr12 106334847 106335029 -14922501 + B2_Mm2 SINE B2 1 186 -9 6 1396 1088 64 43 0 chr12 106335195 106335335 -14922195 + B1_Mm SINE Alu 2 147 0 6 1396 809 114 15 0 chr12 106335335 106335466 -14922064 + (GAAA)n Simple_repeat Simple_repeat 3 135 0 6 1396 296 265 20 30 chr12 106335950 106336051 -14921479 - BC1_Mm scRNA scRNA -51 101 2 6 1396 328 284 174 54 chr12 106336018 106336057 -14921473 - B4A SINE B4 -40 252 86 6 1396 572 246 9 0 chr12 106336057 106336167 -14921363 - PB1D10 SINE Alu -6 111 1 6 1396 253 274 0 0 chr12 106336174 106336236 -14921294 + MLT1A1 LTR MaLR 347 408 0 6 1396 235 313 165 67 chr12 106336521 106336939 -14920591 - L2 LINE L2 -931 2488 2030 6 1396 188 309 80 30 chr12 106338309 106338409 -14919121 - MIRb SINE MIR -161 107 3 6 1396 414 0 0 0 chr12 106338466 106338512 -14919018 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1396 642 250 26 7 chr12 106338907 106339060 -14918470 + RSINE1 SINE B4 10 165 0 6 1396 236 302 62 54 chr12 106341101 106341437 -14916093 + L1MD1 LINE L1 5261 5599 -760 6 1396 1375 152 0 47 chr12 106341470 106341705 -14915825 - URR1B DNA MER1_type -1 224 1 6 1396 664 304 66 0 chr12 106341705 106341991 -14915539 + L1MD1 LINE L1 5699 6003 -239 6 1396 479 174 266 0 chr12 106342042 106342151 -14915379 - B3A SINE B2 -60 138 1 6 1396 746 271 134 26 chr12 106342732 106342874 -14914656 - MLT1B LTR MaLR -50 340 183 6 1396 306 0 0 0 chr12 106342874 106342908 -14914622 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1396 746 271 134 26 chr12 106342908 106343072 -14914458 - MLT1B LTR MaLR -208 182 2 6 1396 1928 60 10 16 chr12 106343280 106343589 -14913941 - MTB LTR MaLR 0 400 1 6 1396 318 67 0 0 chr12 106344148 106344193 -14913337 + (CAG)n Simple_repeat Simple_repeat 2 46 0 6 1396 376 224 31 101 chr12 106344564 106344578 -14912952 - ID_B1 SINE B4 -3 221 215 6 1396 234 0 0 0 chr12 106344578 106344604 -14912926 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1396 376 224 31 101 chr12 106344604 106344718 -14912812 - ID_B1 SINE B4 -10 214 102 6 1396 355 224 32 130 chr12 106344629 106344752 -14912778 - MT2B LTR ERVL -337 264 154 6 1396 230 333 111 14 chr12 106344794 106345001 -14912529 - HAL1 LINE L1 -775 1732 1506 6 1396 1093 185 44 5 chr12 106345008 106345214 -14912316 - B3 SINE B2 0 216 3 6 1396 205 183 16 16 chr12 106345248 106345309 -14912221 + CT-rich Low_complexity Low_complexity 3 63 0 6 1396 400 208 98 10 chr12 106345345 106345447 -14912083 - B1F SINE Alu -36 113 3 6 1396 228 281 0 15 chr12 106345680 106345745 -14911785 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 6 1396 913 251 5 18 chr12 106345854 106346073 -14911457 - ID_B1 SINE B4 -8 216 1 6 1396 774 52 0 34 chr12 106346540 106346659 -14910871 + (TCCC)n Simple_repeat Simple_repeat 1 115 0 6 1396 358 294 47 14 chr12 106347417 106347565 -14909965 + (CATG)n Simple_repeat Simple_repeat 4 156 0 6 1396 369 218 0 0 chr12 106348690 106348768 -14908762 + ID4 SINE ID 3 80 -3 6 1396 21 0 0 0 chr12 106349023 106349044 -14908486 + GC_rich Low_complexity Low_complexity 1 21 0 6 1396 421 300 167 58 chr12 106349742 106350089 -14907441 - MLT1D LTR MaLR -69 436 52 6 1396 360 176 0 0 chr12 106350105 106350173 -14907357 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1396 706 277 135 39 chr12 106350224 106350483 -14907047 - B4 SINE B4 -6 286 3 6 1396 269 337 0 0 chr12 106351043 106351129 -14906401 - LTR33C LTR ERVL -537 92 7 6 1396 1339 194 63 103 chr12 106351794 106352108 -14905422 + MTE2b LTR MaLR 16 315 -64 7 1396 189 0 0 0 chr12 106352108 106352129 -14905401 + (CAA)n Simple_repeat Simple_repeat 2 22 0 7 1396 1339 194 63 103 chr12 106352129 106352193 -14905337 + MTE2b LTR MaLR 316 379 0 7 1396 513 214 10 0 chr12 106352194 106352297 -14905233 + ORR1C1 LTR MaLR 1 104 -274 7 1396 228 35 0 0 chr12 106352352 106352381 -14905149 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1396 663 239 7 29 chr12 106352387 106352525 -14905005 - RSINE1 SINE B4 -24 141 7 7 1396 189 121 0 0 chr12 106353091 106353124 -14904406 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1396 227 333 69 35 chr12 106353209 106353296 -14904234 - MLT1K LTR MaLR -176 419 330 7 1396 4174 119 13 48 chr12 106353356 106354191 -14903339 + ORR1A4-int LTR MaLR 969 1772 -191 7 1396 234 62 0 0 chr12 106354192 106354224 -14903306 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1396 1100 72 0 0 chr12 106354224 106354362 -14903168 - B1_Mus2 SINE Alu -8 139 2 7 1396 673 108 9 26 chr12 106354362 106354476 -14903054 + ORR1A4-int LTR MaLR 1852 1963 0 7 1396 1748 125 101 63 chr12 106354476 106354793 -14902737 + ORR1A4 LTR MaLR 1 329 0 7 1396 592 217 64 21 chr12 106355068 106355209 -14902321 - MTD LTR MaLR 0 419 273 7 1396 771 157 211 58 chr12 106355215 106355317 -14902213 - URR1A DNA MER1_type -6 220 119 7 1396 1397 80 10 21 chr12 106355317 106355509 -14902021 + B2_Mm2 SINE B2 1 190 -5 7 1396 771 157 211 58 chr12 106355509 106355596 -14901934 - URR1A DNA MER1_type -108 118 2 7 1396 413 287 215 26 chr12 106355603 106355794 -14901736 - MTD LTR MaLR -178 243 18 7 1396 312 366 72 18 chr12 106355886 106356053 -14901477 - MIRb SINE MIR -62 206 31 7 1396 1644 188 5 94 chr12 106356468 106356849 -14900681 - Lx4A LINE L1 0 7058 6712 7 1396 4496 116 55 11 chr12 106356849 106357165 -14900365 + RMER17A LTR ERVK 1 311 -440 7 1396 686 87 10 0 chr12 106357165 106357268 -14900262 + (TCTCC)n Simple_repeat Simple_repeat 2 105 0 7 1396 4496 103 52 10 chr12 106357268 106357685 -14899845 + RMER17A LTR ERVK 312 750 -1 7 1396 3715 148 15 3 chr12 106357685 106358300 -14899230 - Lx4A LINE L1 -341 6717 6096 7 1396 2316 141 21 13 chr12 106358300 106358680 -14898850 + RLTR9A2 LTR ERVK 1 383 0 7 1396 303 319 70 60 chr12 106358682 106358996 -14898534 + ETnERV2-int LTR ERVK 4 320 -2994 7 1396 293 100 20 0 chr12 106358996 106359046 -14898484 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 7 1396 261 0 0 0 chr12 106359073 106359102 -14898428 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1396 5105 125 44 66 chr12 106359102 106360104 -14897426 + ETnERV2-int LTR ERVK 1053 2032 -5374 7 1396 1433 44 0 32 chr12 106360105 106360292 -14897238 + B2_Mm2 SINE B2 1 181 -14 7 1396 423 0 0 0 chr12 106360319 106360366 -14897164 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1396 3031 185 19 57 chr12 106360366 106361031 -14896499 + ETnERV2-int LTR ERVK 2055 2694 -4712 7 1396 1365 80 11 0 chr12 106361034 106361210 -14896320 + B2_Mm1t SINE B2 2 179 -14 7 1396 314 124 365 10 chr12 106361261 106361365 -14896165 + B2_Mm2 SINE B2 47 187 -8 7 1396 10325 174 81 57 chr12 106361365 106362561 -14894969 + RMER16-int LTR ERVK 1579 2868 -2538 7 1396 427 30 29 29 chr12 106362561 106362630 -14894900 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 7 1396 10325 174 81 57 chr12 106362630 106363505 -14894025 + RMER16-int LTR ERVK 2869 3702 -1704 7 1396 1152 59 0 0 chr12 106363505 106363641 -14893889 - B1_Mus2 SINE Alu -10 137 2 7 1396 10325 211 60 79 chr12 106363641 106364460 -14893070 + RMER16-int LTR ERVK 3703 4170 -1236 7 1396 277 206 13 52 chr12 106364663 106364740 -14892790 + RMER16-int LTR ERVK 7331 7404 -2 7 1396 2113 174 5 64 chr12 106364741 106365147 -14892383 + RLTR9A2 LTR ERVK 1 382 -1 7 1396 3196 106 4 16 chr12 106365148 106365709 -14891821 - Lx4A LINE L1 -957 6101 5536 7 1396 242 204 0 0 chr12 106365734 106365778 -14891752 + RMER30 DNA MER1_type 8 51 -151 7 1396 352 222 0 0 chr12 106366318 106366381 -14891149 - MLT2D LTR ERVL -248 166 104 7 1396 1602 212 38 49 chr12 106366623 106366990 -14890540 - ORR1D2 LTR MaLR -2 368 6 7 1396 369 103 15 0 chr12 106367350 106367418 -14890112 - B2_Mm2 SINE B2 0 195 127 7 1396 1197 104 45 17 chr12 106367454 106367630 -14889900 - B2_Mm2 SINE B2 -14 181 1 7 1396 208 133 0 0 chr12 106368255 106368285 -14889245 + MIR SINE MIR 116 145 -117 7 1396 2065 168 102 5 chr12 106368335 106368719 -14888811 - MTC LTR MaLR 0 421 1 7 1396 746 290 42 0 chr12 106368737 106368951 -14888579 + ID_B1 SINE B4 2 224 0 7 1396 869 143 7 0 chr12 106369402 106369542 -14887988 + URR1B DNA MER1_type 85 225 0 7 1396 667 46 46 0 chr12 106369998 106370106 -14887424 + (TC)n Simple_repeat Simple_repeat 2 114 0 7 1396 187 190 17 17 chr12 106370130 106370189 -14887341 + CT-rich Low_complexity Low_complexity 1 59 0 7 1396 269 173 58 0 chr12 106370250 106370302 -14887228 - RMER10A LTR ERVL -387 55 1 7 1396 28 61 0 0 chr12 106370347 106370396 -14887134 + AT_rich Low_complexity Low_complexity 1 49 0 7 1396 318 146 0 18 chr12 106370416 106370472 -14887058 - B2_Mm2 SINE B2 -94 101 47 7 1396 1028 161 23 0 chr12 106370499 106370673 -14886857 - B2_Mm2 SINE B2 -17 178 1 7 1396 650 47 12 0 chr12 106370742 106370828 -14886702 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 7 1396 243 211 35 17 chr12 106371429 106371487 -14886043 - ID SINE ID -164 60 2 7 1396 475 226 72 36 chr12 106371496 106371634 -14885896 - B1F SINE Alu -5 144 2 7 1396 378 0 0 0 chr12 106371705 106371747 -14885783 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1396 459 0 0 0 chr12 106371747 106371797 -14885733 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1396 392 245 41 0 chr12 106371802 106371900 -14885630 + B1_Mus2 SINE Alu 45 146 -1 7 1396 302 267 7 0 chr12 106372079 106372229 -14885301 + (CA)n Simple_repeat Simple_repeat 1 151 0 7 1396 381 287 9 0 chr12 106372816 106372931 -14884599 + (TG)n Simple_repeat Simple_repeat 2 117 0 7 1396 549 281 79 6 chr12 106372996 106373161 -14884369 - B4A SINE B4 -115 177 1 7 1396 1908 200 97 13 chr12 106373794 106374270 -14883260 - RMER15 LTR ERVL -7 568 53 7 1396 232 246 16 16 chr12 106374284 106374346 -14883184 + GA-rich Low_complexity Low_complexity 4 65 0 7 1396 315 304 25 12 chr12 106376177 106376257 -14881273 + ID SINE ID 2 82 -142 7 1396 987 136 7 0 chr12 106376267 106376414 -14881116 + B1_Mus1 SINE Alu 1 148 0 7 1396 369 357 64 18 chr12 106376555 106376726 -14880804 - MIRb SINE MIR -59 209 31 7 1396 489 76 0 0 chr12 106377137 106377203 -14880327 + (TCC)n Simple_repeat Simple_repeat 2 67 0 7 1396 8506 143 16 14 chr12 106377223 106377445 -14880085 - Lx4A LINE L1 0 7058 6841 7 1396 2356 65 78 3 chr12 106377445 106377767 -14879763 - ORR1A1 LTR MaLR 0 346 1 7 1396 8506 138 14 54 chr12 106377767 106379207 -14878323 - Lx4A LINE L1 -218 6840 5443 7 1396 1106 96 7 0 chr12 106379207 106379353 -14878177 - B1_Mus1 SINE Alu 0 148 2 7 1396 5590 128 9 132 chr12 106379353 106379821 -14877709 - Lx4A LINE L1 -435 5442 5019 7 1396 1102 96 0 7 chr12 106379821 106379968 -14877562 - B1_Mus2 SINE Alu 0 147 2 7 1396 5590 128 9 132 chr12 106379968 106380028 -14877502 - Lx4A LINE L1 -859 5018 4975 7 1396 249 33 0 0 chr12 106380028 106380058 -14877472 + (TATG)n Simple_repeat Simple_repeat 4 33 0 7 1396 5590 128 9 132 chr12 106380058 106380261 -14877269 - Lx4A LINE L1 -903 4974 4804 7 1396 5091 118 93 11 chr12 106380261 106381097 -14876433 - RMER17A2 LTR ERVK 0 906 2 7 1396 5590 128 9 132 chr12 106381097 106381147 -14876383 - Lx4A LINE L1 -1074 4803 4754 7 1396 265 284 30 59 chr12 106381531 106381632 -14875898 + MER5A1 DNA MER1_type 51 148 -18 7 1396 289 260 133 115 chr12 106381652 106381817 -14875713 - MLT2B4 LTR ERVL -288 268 101 7 1396 1554 212 38 48 chr12 106382050 106382422 -14875108 - ORR1D2 LTR MaLR 0 370 3 7 1396 265 160 0 0 chr12 106382779 106382796 -14874734 - B2_Mm1a SINE B2 -17 176 160 7 1396 222 37 0 0 chr12 106382796 106382823 -14874707 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 7 1396 265 160 0 0 chr12 106382823 106382855 -14874675 - B2_Mm1a SINE B2 -34 159 128 7 1396 1174 99 51 23 chr12 106382890 106383066 -14874464 - B2_Mm2 SINE B2 -14 181 1 7 1396 1860 202 101 0 chr12 106383772 106384148 -14873382 - MTC LTR MaLR -1 420 7 7 1396 530 341 42 0 chr12 106384171 106384385 -14873145 + ID_B1 SINE B4 2 224 0 7 1396 869 129 7 7 chr12 106384835 106384976 -14872554 + URR1B DNA MER1_type 85 225 0 7 1396 207 0 0 0 chr12 106385747 106385770 -14871760 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1396 505 206 216 63 chr12 106386163 106386432 -14871098 + RMER10A LTR ERVL 85 394 -48 7 1396 280 196 0 40 chr12 106386432 106386533 -14870997 + CT-rich Low_complexity Low_complexity 1 97 0 7 1396 277 154 58 0 chr12 106386594 106386646 -14870884 - RMER10A LTR ERVL -387 55 1 7 1396 477 0 0 0 chr12 106386669 106386722 -14870808 + (TA)n Simple_repeat Simple_repeat 2 54 0 7 1396 27 0 0 0 chr12 106386773 106386800 -14870730 + AT_rich Low_complexity Low_complexity 1 27 0 7 1396 288 194 0 20 chr12 106386806 106386871 -14870659 - B2_Mm2 SINE B2 -107 109 47 7 1396 1099 149 11 0 chr12 106386898 106387072 -14870458 - B2_Mm1t SINE B2 -17 176 1 7 1396 446 219 0 8 chr12 106387139 106387200 -14870330 + polypurine Low_complexity Low_complexity 4 64 0 7 1396 969 150 0 0 chr12 106387200 106387380 -14870150 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1396 446 219 0 8 chr12 106387380 106387442 -14870088 + polypurine Low_complexity Low_complexity 65 125 0 7 1396 243 211 35 17 chr12 106388043 106388101 -14869429 - ID SINE ID -164 60 2 7 1396 481 233 72 36 chr12 106388110 106388248 -14869282 - B1F SINE Alu -5 144 2 7 1396 324 0 0 0 chr12 106388334 106388370 -14869160 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1396 333 0 0 0 chr12 106388370 106388406 -14869124 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1396 433 255 20 0 chr12 106388409 106388507 -14869023 + B1_Mus2 SINE Alu 45 144 -3 7 1396 690 221 3 0 chr12 106388717 106389050 -14868480 + (CA)n Simple_repeat Simple_repeat 1 333 0 7 1396 3684 169 115 25 chr12 106389052 106389878 -14867652 + RMER17A2 LTR ERVK 1 900 -6 7 1396 297 0 0 0 chr12 106389880 106389913 -14867617 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1396 333 179 43 29 chr12 106390473 106390542 -14866988 - HAL1-3A_ME LINE L1 -813 2045 1976 7 1396 202 328 0 0 chr12 106390544 106390602 -14866928 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1396 598 304 108 19 chr12 106390612 106390880 -14866650 - B4A SINE B4 0 292 1 7 1396 1907 201 95 14 chr12 106391515 106391999 -14865531 - RMER15 LTR ERVL 0 575 53 7 1396 265 233 13 40 chr12 106392011 106392087 -14865443 + GA-rich Low_complexity Low_complexity 5 78 0 7 1396 246 295 25 25 chr12 106393922 106394002 -14863528 + ID4 SINE ID 2 81 -2 7 1396 1119 95 7 0 chr12 106394012 106394159 -14863371 + B1_Mus1 SINE Alu 1 148 0 7 1396 332 359 71 18 chr12 106394293 106394463 -14863067 - MIRb SINE MIR -59 209 31 7 1396 553 90 22 0 chr12 106394874 106394963 -14862567 + (TCC)n Simple_repeat Simple_repeat 3 93 0 7 1396 850 213 50 36 chr12 106394979 106395198 -14862332 - Lx4A LINE L1 0 7058 6837 8 1396 919 35 18 0 chr12 106395198 106395312 -14862218 - ORR1A1 LTR MaLR 0 346 231 8 1396 507 230 10 0 chr12 106395703 106395803 -14861727 - ETnERV2-int LTR ERVK -204 7202 7102 8 1396 1881 75 12 8 chr12 106395803 106396071 -14861459 - ORR1A1 LTR MaLR -75 299 1 8 1396 361 164 0 0 chr12 106396072 106396133 -14861397 - Lx4A LINE L1 -218 6840 6780 8 1396 208 133 0 0 chr12 106396426 106396456 -14861074 + MIR SINE MIR 116 145 -117 8 1396 1708 204 141 3 chr12 106396501 106396870 -14860660 - MTC LTR MaLR -1 420 1 8 1396 731 293 77 0 chr12 106396895 106397103 -14860427 + ID_B1 SINE B4 1 224 0 8 1396 669 191 29 0 chr12 106397549 106397685 -14859845 + URR1B DNA MER1_type 85 224 -1 8 1396 185 108 27 0 chr12 106398167 106398204 -14859326 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1396 221 370 19 57 chr12 106398366 106398472 -14859058 - L2c LINE L2 -227 3160 3059 8 1396 422 223 21 84 chr12 106398969 106399111 -14858419 + RMER10A LTR ERVL 262 394 -48 8 1396 294 182 0 18 chr12 106399391 106399447 -14858083 - B2_Mm2 SINE B2 -94 101 47 8 1396 1077 163 0 6 chr12 106399469 106399648 -14857882 - B2_Mm2 SINE B2 -17 178 1 8 1396 427 81 0 55 chr12 106399714 106399805 -14857725 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 8 1396 235 228 35 17 chr12 106400406 106400464 -14857066 - ID SINE ID -164 60 2 8 1396 475 226 72 36 chr12 106400473 106400611 -14856919 - B1F SINE Alu -5 144 2 8 1396 414 0 0 0 chr12 106400697 106400743 -14856787 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1396 243 0 0 0 chr12 106400743 106400769 -14856761 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1396 433 255 20 0 chr12 106400772 106400870 -14856660 + B1_Mus2 SINE Alu 45 144 -3 8 1396 303 114 0 22 chr12 106401046 106401091 -14856439 + HAL1-3A_ME LINE L1 1969 2012 -846 8 1396 506 249 0 8 chr12 106401102 106401338 -14856192 + (CA)n Simple_repeat Simple_repeat 1 233 0 8 1396 344 257 18 0 chr12 106401924 106402033 -14855497 + (TG)n Simple_repeat Simple_repeat 1 111 0 8 1396 641 279 87 73 chr12 106402035 106402321 -14855209 - B4A SINE B4 -2 290 1 8 1396 2026 203 100 15 chr12 106402912 106403393 -14854137 - RMER15 LTR ERVL 0 575 54 8 1396 199 173 49 12 chr12 106403411 106403493 -14854037 + GA-rich Low_complexity Low_complexity 2 86 0 8 1396 288 304 25 25 chr12 106405346 106405427 -14852103 + ID SINE ID 2 82 -142 8 1396 1107 95 0 13 chr12 106405437 106405587 -14851943 + B1_Mus1 SINE Alu 1 148 0 8 1396 325 360 72 18 chr12 106405724 106405891 -14851639 - MIRb SINE MIR -62 206 31 8 1396 6055 172 14 6 chr12 106406338 106407355 -14850175 - Lx4A LINE L1 0 7058 6034 8 1396 284 305 74 99 chr12 106407715 106407895 -14849635 - MLT1E1A LTR MaLR -195 485 268 8 1396 384 22 0 0 chr12 106409365 106409410 -14848120 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1396 28 29 0 0 chr12 106409416 106409451 -14848079 + AT_rich Low_complexity Low_complexity 1 35 0 8 1396 5206 93 21 6 chr12 106409514 106410240 -14847290 - Lx LINE L1 -5 6649 5913 8 1396 3523 137 8 57 chr12 106410243 106410893 -14846637 + Lx LINE L1 5266 5883 0 8 1396 348 280 7 74 chr12 106410912 106411047 -14846483 - Charlie12 DNA MER1_type -2734 139 14 8 1396 414 0 0 0 chr12 106411389 106411435 -14846095 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1396 375 242 26 11 chr12 106412114 106412229 -14845301 + PB1D10 SINE Alu 1 119 -1 8 1396 807 136 0 0 chr12 106412283 106412401 -14845129 + B2_Mm2 SINE B2 1 118 -77 8 1396 240 65 0 0 chr12 106412395 106412426 -14845104 - B3 SINE B2 -183 33 3 8 1396 2274 146 96 3 chr12 106413134 106413518 -14844012 - MTC LTR MaLR -1 420 1 8 1396 536 308 51 0 chr12 106413537 106413732 -14843798 + ID_B1 SINE B4 2 206 -18 8 1396 879 150 7 0 chr12 106414200 106414340 -14843190 + URR1B DNA MER1_type 85 225 0 8 1396 270 0 0 0 chr12 106414822 106414852 -14842678 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1396 189 0 0 0 chr12 106415075 106415096 -14842434 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1396 226 250 93 74 chr12 106415516 106415624 -14841906 + RMER10A LTR ERVL 123 232 -210 8 1396 574 138 0 18 chr12 106415641 106415752 -14841778 + GA-rich Low_complexity Low_complexity 4 112 0 8 1396 197 167 19 0 chr12 106416446 106416500 -14841030 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1396 594 311 89 53 chr12 106416523 106416805 -14840725 - B4A SINE B4 0 292 1 8 1396 1851 200 113 21 chr12 106417438 106417917 -14839613 - RMER15 LTR ERVL 0 575 53 8 1396 194 208 19 0 chr12 106417942 106417995 -14839535 + GA-rich Low_complexity Low_complexity 4 57 0 8 1396 552 269 33 72 chr12 106419851 106420003 -14837527 + ID_B1 SINE B4 2 147 -77 8 1396 265 0 0 161 chr12 106420003 106420140 -14837390 + (CAGAG)n Simple_repeat Simple_repeat 1 115 0 8 1396 645 162 9 0 chr12 106420143 106420248 -14837282 + B1_Mm SINE Alu 42 147 0 8 1396 3078 94 2 1 chr12 106420474 106420958 -14836572 - ORR1A1-int LTR MaLR -760 1032 324 8 1396 3270 161 25 60 chr12 106421441 106422054 -14835476 - Lx4A LINE L1 0 7058 6468 8 1396 1123 126 29 0 chr12 106422055 106422229 -14835301 + B2_Mm2 SINE B2 1 179 -16 8 1396 459 75 336 9 chr12 106422259 106422366 -14835164 + B2_Mm2 SINE B2 47 188 -7 8 1396 5897 133 10 48 chr12 106422366 106423426 -14834104 - Lx4A LINE L1 -581 6477 5443 8 1396 1070 97 14 0 chr12 106423426 106423571 -14833959 - B1_Mus1 SINE Alu 0 148 2 8 1396 5897 127 9 100 chr12 106423571 106424274 -14833256 - Lx4A LINE L1 -435 5442 4804 8 1396 4943 139 70 14 chr12 106424274 106425129 -14832401 - RMER17A2 LTR ERVK -2 904 2 8 1396 5897 127 9 100 chr12 106425129 106425187 -14832343 - Lx4A LINE L1 -1074 4803 4754 8 1396 247 309 30 60 chr12 106425551 106425651 -14831879 + MER5A1 DNA MER1_type 52 148 -18 8 1396 1600 202 38 49 chr12 106426053 106426423 -14831107 - ORR1D2 LTR MaLR 0 370 5 8 1396 237 64 40 60 chr12 106426766 106426786 -14830744 - B2_Mm1t SINE B2 -16 177 159 8 1396 402 21 0 0 chr12 106426786 106426833 -14830697 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 8 1396 237 64 40 60 chr12 106426833 106426862 -14830668 - B2_Mm1t SINE B2 -35 158 129 8 1396 1184 99 46 17 chr12 106426899 106427073 -14830457 - B2_Mm2 SINE B2 -14 181 3 8 1396 191 183 190 19 chr12 106427614 106427703 -14829827 + MIR SINE MIR 36 149 -119 8 1396 1790 192 131 3 chr12 106427752 106428118 -14829412 - MTC LTR MaLR 0 421 9 8 1396 717 281 51 0 chr12 106428144 106428340 -14829190 + ID_B1 SINE B4 2 207 -17 8 1396 840 150 7 7 chr12 106428806 106428947 -14828583 + URR1B DNA MER1_type 85 225 0 8 1396 426 20 0 0 chr12 106429511 106429562 -14827968 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1396 275 85 21 0 chr12 106429660 106429707 -14827823 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1396 285 75 0 0 chr12 106429900 106429940 -14827590 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1397 295 265 12 0 chr12 106430907 106431069 -14826461 + (TG)n Simple_repeat Simple_repeat 2 165 0 8 1397 556 285 72 6 chr12 106431134 106431300 -14826230 - B4A SINE B4 -115 177 1 8 1397 1942 200 102 15 chr12 106431934 106432415 -14825115 - RMER15 LTR ERVL 0 575 53 8 1397 579 234 33 78 chr12 106434317 106434470 -14823060 + ID_B1 SINE B4 2 147 -77 8 1397 225 252 93 37 chr12 106434488 106434595 -14822935 + RLTR25B LTR ERVK 397 509 -519 8 1397 682 143 9 0 chr12 106434532 106434637 -14822893 + B1_Mm SINE Alu 42 147 0 8 1397 346 353 52 12 chr12 106434783 106434955 -14822575 - MIRb SINE MIR -59 209 31 8 1397 8612 143 16 37 chr12 106435409 106437056 -14820474 - Lx4A LINE L1 0 7058 5440 8 1397 1147 83 14 0 chr12 106437056 106437201 -14820329 - B1_Mus1 SINE Alu 0 148 2 8 1397 5653 128 22 103 chr12 106437201 106437892 -14819638 - Lx4A LINE L1 -438 5439 4804 8 1397 4999 138 70 9 chr12 106437892 106438743 -14818787 - RMER17A2 LTR ERVK -2 904 2 8 1397 5653 128 22 103 chr12 106438743 106438793 -14818737 - Lx4A LINE L1 -1074 4803 4754 8 1397 230 319 30 60 chr12 106439156 106439256 -14818274 + MER5A1 DNA MER1_type 52 148 -18 8 1397 1465 165 97 4 chr12 106439277 106439544 -14817986 - MTC LTR MaLR -129 292 1 8 1397 740 276 51 0 chr12 106439562 106439758 -14817772 + ID_B1 SINE B4 2 207 -17 8 1397 849 150 7 0 chr12 106440225 106440365 -14817165 + URR1B DNA MER1_type 85 225 0 8 1397 491 0 17 0 chr12 106440881 106440940 -14816590 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1397 211 304 29 0 chr12 106441104 106441173 -14816357 - L2c LINE L2 -227 3160 3090 8 1397 537 16 0 0 chr12 106441176 106441238 -14816292 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 8 1397 238 265 7 20 chr12 106442144 106442294 -14815236 + (TG)n Simple_repeat Simple_repeat 2 149 0 8 1397 556 285 72 6 chr12 106442359 106442525 -14815005 - B4A SINE B4 -115 177 1 8 1397 1136 88 0 0 chr12 106443065 106443212 -14814318 + B1_Mus2 SINE Alu 1 147 0 8 1397 2039 197 95 14 chr12 106443337 106443821 -14813709 - RMER15 LTR ERVL 0 575 53 8 1397 1018 123 7 0 chr12 106445685 106445831 -14811699 + B1_Mus1 SINE Alu 1 147 -1 8 1397 495 45 0 0 chr12 106445839 106445905 -14811625 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 8 1397 481 231 43 69 chr12 106445923 106446039 -14811491 + ID_B1 SINE B4 102 214 -10 8 1397 402 21 0 0 chr12 106446040 106446087 -14811443 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1397 213 175 0 0 chr12 106446087 106446127 -14811403 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1397 689 228 0 0 chr12 106446153 106446276 -14811254 - B1_Mur4 SINE Alu -27 123 1 8 1397 304 288 48 57 chr12 106446587 106446766 -14810764 - MER20 DNA MER1_type 0 219 9 8 1397 594 263 56 105 chr12 106446953 106447238 -14810292 + MTEa LTR MaLR 20 290 -89 8 1397 226 214 234 97 chr12 106447551 106447696 -14809834 - MTEb LTR MaLR -214 165 1 8 1397 239 270 0 16 chr12 106448520 106448584 -14808946 + MER34 LTR ERV1 143 205 -337 9 1397 413 252 78 20 chr12 106448611 106448770 -14808760 - MTEa LTR MaLR -7 372 195 9 1397 206 200 0 0 chr12 106448794 106448829 -14808701 + G-rich Low_complexity Low_complexity 1 35 0 9 1397 354 306 99 66 chr12 106448829 106449011 -14808519 - MTEa LTR MaLR -168 191 4 9 1397 304 298 147 25 chr12 106449011 106449311 -14808219 + MER34 LTR ERV1 213 571 0 9 1397 454 246 16 54 chr12 106449380 106449509 -14808021 + B1_Mur1 SINE Alu 21 144 -5 9 1397 341 319 51 51 chr12 106449518 106449772 -14807758 + L1MEg LINE L1 1805 2058 -4026 9 1397 932 92 60 54 chr12 106450847 106451031 -14806499 - L1Md_F3 LINE L1 0 6584 6400 9 1397 477 268 69 39 chr12 106451104 106451388 -14806142 - MLT1B LTR MaLR -71 319 6 9 1397 748 178 29 36 chr12 106451675 106451815 -14805715 + B1_Mur2 SINE Alu 10 148 -1 9 1397 384 97 62 31 chr12 106451820 106451948 -14805582 + GA-rich Low_complexity Low_complexity 3 134 0 9 1397 390 221 215 0 chr12 106452379 106452556 -14804974 + MER58A DNA MER1_type 1 216 -8 9 1397 238 338 0 27 chr12 106452557 106452630 -14804900 + L2 LINE L2 2726 2796 -623 9 1397 368 307 121 36 chr12 106453494 106453774 -14803756 + L1MB1 LINE L1 5862 6165 -3 9 1397 331 324 82 69 chr12 106453778 106453849 -14803681 + B4A SINE B4 1 73 -219 9 1397 213 269 73 65 chr12 106453849 106453972 -14803558 + PB1 SINE Alu 1 124 -3 9 1397 234 0 0 0 chr12 106454128 106454154 -14803376 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1397 752 193 36 0 chr12 106454192 106454332 -14803198 - B1_Mur4 SINE Alu -1 149 5 9 1397 224 253 0 62 chr12 106456069 106456149 -14801381 + A-rich Low_complexity Low_complexity 1 75 0 9 1397 280 280 44 177 chr12 106457316 106457429 -14800101 - B4 SINE B4 -13 279 182 9 1397 190 29 0 81 chr12 106457452 106457489 -14800041 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1397 350 306 33 26 chr12 106457508 106457659 -14799871 - B4 SINE B4 -136 156 5 9 1397 1269 27 0 26 chr12 106458098 106458249 -14799281 + B1_Mm SINE Alu 1 147 0 9 1397 654 285 0 0 chr12 106458724 106458861 -14798669 - B1_Mur1 SINE Alu -1 148 12 9 1397 547 268 40 155 chr12 106458725 106458977 -14798553 - B4 SINE B4 -69 223 1 9 1397 349 228 74 59 chr12 106459129 106459264 -14798266 + B1F1 SINE Alu 5 141 -8 9 1397 228 35 0 0 chr12 106460490 106460519 -14797011 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1397 236 240 20 0 chr12 106460984 106461034 -14796496 + (CGGGG)n Simple_repeat Simple_repeat 4 54 0 9 1397 1155 76 0 0 chr12 106461924 106462062 -14795468 + B1_Mus2 SINE Alu 1 138 -9 9 1397 207 0 0 0 chr12 106462062 106462085 -14795445 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 9 1397 240 35 0 0 chr12 106462284 106462313 -14795217 + (TAA)n Simple_repeat Simple_repeat 3 31 0 9 1397 950 59 0 0 chr12 106462321 106462439 -14795091 - B1_Mus1 SINE Alu -2 146 29 9 1397 428 309 71 32 chr12 106462465 106462619 -14794911 - RSINE1 SINE B4 -2 163 4 9 1397 22 0 0 0 chr12 106463006 106463028 -14794502 + GC_rich Low_complexity Low_complexity 1 22 0 9 1397 439 197 136 202 chr12 106463802 106463916 -14793614 - URR1A DNA MER1_type 0 226 136 9 1397 997 66 81 0 chr12 106463916 106464052 -14793478 - B1_Mus1 SINE Alu 0 148 2 9 1397 439 197 136 202 chr12 106464052 106464179 -14793351 - URR1A DNA MER1_type -91 135 1 9 1397 1129 102 0 0 chr12 106464624 106464771 -14792759 - B1_Mus2 SINE Alu 0 147 1 9 1397 277 264 14 14 chr12 106464917 106464990 -14792540 - MER5A1 DNA MER1_type -33 133 61 9 1397 934 211 66 0 chr12 106464998 106465164 -14792366 - B3 SINE B2 -2 214 38 9 1397 367 326 138 10 chr12 106465375 106465570 -14791960 - L1M5 LINE L1 -1277 4869 4650 9 1397 778 297 57 25 chr12 106465788 106466033 -14791497 - B4A SINE B4 -1 291 39 9 1397 1082 99 0 0 chr12 106466950 106467092 -14790438 - B1_Mus2 SINE Alu -5 142 1 9 1397 12579 76 29 60 chr12 106467476 106470329 -14787201 - L1VL2 LINE L1 -627 2988 223 9 1397 689 276 53 43 chr12 106470807 106471015 -14786515 - B3 SINE B2 0 216 7 9 1397 236 180 67 0 chr12 106471024 106471113 -14786417 + (TA)n Simple_repeat Simple_repeat 2 96 0 9 1397 461 254 15 76 chr12 106471210 106471344 -14786186 - PB1 SINE Alu -5 144 1 9 1397 1095 184 9 42 chr12 106473708 106473924 -14783606 + URR1A DNA MER1_type 18 226 0 9 1397 1272 218 96 29 chr12 106474140 106474485 -14783045 + ORR1D2 LTR MaLR 3 370 0 9 1397 314 23 23 0 chr12 106474825 106474868 -14782662 + (TTG)n Simple_repeat Simple_repeat 2 45 0 9 1397 889 123 54 0 chr12 106474877 106475007 -14782523 - B1_Mm SINE Alu -9 138 2 9 1397 746 195 184 0 chr12 106476779 106476953 -14780577 - B3 SINE B2 0 216 11 9 1397 410 186 19 58 chr12 106476968 106477071 -14780459 - PB1D9 SINE Alu -2 118 20 9 1397 29 0 0 0 chr12 106477277 106477306 -14780224 + AT_rich Low_complexity Low_complexity 1 29 0 9 1397 1055 128 69 74 chr12 106478362 106478658 -14778872 + ORR1D1 LTR MaLR 21 374 0 9 1397 22 0 0 0 chr12 106478723 106478745 -14778785 + AT_rich Low_complexity Low_complexity 1 22 0 9 1397 732 286 164 29 chr12 106479118 106479483 -14778047 + MLT2B3 LTR ERVL 5 417 -98 9 1397 210 37 0 0 chr12 106479759 106479786 -14777744 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 9 1397 279 267 0 0 chr12 106479808 106479894 -14777636 + (TG)n Simple_repeat Simple_repeat 2 87 0 9 1397 234 190 0 94 chr12 106479897 106479961 -14777569 - MLT1J1 LTR MaLR -385 59 2 9 1397 361 237 113 0 chr12 106480554 106480651 -14776879 - MER20 DNA MER1_type -85 134 27 9 1397 3054 36 42 37 chr12 106481066 106481471 -14776059 + MTB_Mm LTR MaLR 1 407 0 9 1397 250 291 51 0 chr12 106481627 106481706 -14775824 - MIRc SINE MIR -93 175 93 9 1397 227 303 81 16 chr12 106481717 106481841 -14775689 - RMER15 LTR ERVL -90 485 354 9 1397 274 271 97 61 chr12 106481907 106482021 -14775509 - RMER15 LTR ERVL -457 118 1 9 1397 1000 161 117 34 chr12 106482616 106482822 -14774708 + URR1B DNA MER1_type 1 223 -2 9 1397 232 399 0 0 chr12 106483218 106483396 -14774134 + (TGGG)n Simple_repeat Simple_repeat 3 180 0 9 1397 204 111 0 0 chr12 106484252 106484288 -14773242 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9 1397 234 0 0 0 chr12 106484697 106484723 -14772807 + (TC)n Simple_repeat Simple_repeat 2 27 0 9 1397 436 268 32 119 chr12 106485878 106486057 -14771473 - B3A SINE B2 -7 191 23 9 1397 609 144 0 0 chr12 106486632 106486764 -14770766 + (TC)n Simple_repeat Simple_repeat 1 132 0 9 1397 233 195 0 0 chr12 106486817 106486858 -14770672 - MIRc SINE MIR -17 251 211 9 1397 211 204 0 0 chr12 106486860 106486904 -14770626 - MIRc SINE MIR -29 239 196 9 1397 1572 179 87 43 chr12 106487589 106487934 -14769596 - ORR1C1 LTR MaLR -18 360 1 9 1397 1325 258 71 11 chr12 106487974 106488327 -14769203 - MTEb LTR MaLR -5 374 1 9 1397 915 246 77 22 chr12 106489872 106490146 -14767384 + B4A SINE B4 2 290 -2 9 1397 242 256 8 0 chr12 106490154 106490275 -14767255 + (CA)n Simple_repeat Simple_repeat 1 122 0 9 1397 726 233 46 15 chr12 106491372 106491568 -14765962 - B4A SINE B4 -87 205 4 9 1397 219 298 93 31 chr12 106491599 106491696 -14765834 + MIRm SINE MIR 174 276 0 9 1397 369 264 17 0 chr12 106492007 106492310 -14765220 + (TG)n Simple_repeat Simple_repeat 1 308 0 9 1397 212 269 10 0 chr12 106492356 106492460 -14765070 + (TG)n Simple_repeat Simple_repeat 1 105 0 9 1397 1021 238 51 64 chr12 106492526 106492822 -14764708 - B4A SINE B4 0 292 1 9 1397 405 231 30 76 chr12 106492871 106492924 -14764606 - PB1 SINE Alu -2 125 77 9 1397 2205 135 40 11 chr12 106492924 106493297 -14764233 + ORR1C2 LTR MaLR 1 384 0 9 1397 405 231 30 76 chr12 106493297 106493374 -14764156 - PB1 SINE Alu -51 76 1 9 1397 1315 97 6 0 chr12 106493435 106493611 -14763919 + B2_Mm2 SINE B2 1 177 -18 9 1397 189 275 139 22 chr12 106494900 106494989 -14762541 - MIRm SINE MIR -84 192 87 9 1397 370 250 127 17 chr12 106495438 106495556 -14761974 + MLT2B4 LTR ERVL 1 131 -425 9 1397 437 324 35 21 chr12 106496222 106496367 -14761163 - RMER15 LTR ERVL -153 422 276 9 1397 289 300 129 15 chr12 106496368 106496500 -14761030 - RMER15 LTR ERVL -418 157 11 9 1397 683 265 142 42 chr12 106496620 106496880 -14760650 + B4A SINE B4 2 287 -5 9 1397 842 86 56 0 chr12 106497741 106497903 -14759627 + (TCCCC)n Simple_repeat Simple_repeat 2 172 0 9 1397 1801 244 104 69 chr12 106497909 106498318 -14759212 - L1_Rod LINE L1 -167 5680 5223 9 1397 679 146 173 52 chr12 106498318 106498491 -14759039 - B2_Mm2 SINE B2 0 195 2 9 1397 1801 244 104 69 chr12 106498491 106498892 -14758638 - L1_Rod LINE L1 -625 5222 4842 9 1397 185 311 40 0 chr12 106498963 106499037 -14758493 - MIRc SINE MIR -127 141 65 9 1397 238 353 62 36 chr12 106499298 106499492 -14758038 + MLT1E2 LTR MaLR 328 526 -101 9 1397 672 260 14 55 chr12 106500121 106500311 -14757219 - ID_B1 SINE B4 -63 229 57 1 1397 928 247 12 87 chr12 106500648 106500901 -14756629 - B4A SINE B4 -58 234 1 2 1397 186 71 0 0 chr12 106500916 106500944 -14756586 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1397 186 43 0 0 chr12 106502279 106502302 -14755228 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 4 1397 183 358 79 48 chr12 106502347 106502473 -14755057 - L2b LINE L2 -9 3366 3237 5 1397 423 0 0 0 chr12 106503035 106503082 -14754448 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1397 329 261 0 0 chr12 106503692 106503757 -14753773 - ID4_ SINE ID -18 65 1 7 1397 219 284 218 9 chr12 106503765 106503785 -14753745 - ID_B1 SINE B4 -3 221 202 8 1397 1334 215 45 77 chr12 106503785 106504163 -14753367 - ORR1D2 LTR MaLR 0 370 5 9 1397 292 287 81 0 chr12 106504165 106504252 -14753278 - PB1D10 SINE Alu -16 101 8 1 1397 1265 71 18 0 chr12 106504733 106504902 -14752628 - B2_Mm2 SINE B2 -15 180 9 1 1397 219 269 43 43 chr12 106505254 106505324 -14752206 + L2c LINE L2 3268 3337 -50 1 1397 195 129 0 0 chr12 106505569 106505600 -14751930 + (GAAAA)n Simple_repeat Simple_repeat 1 31 0 1 1397 320 253 65 21 chr12 106505650 106505743 -14751787 - MIR SINE MIR -61 147 51 1 1397 1063 250 138 60 chr12 106505956 106506008 -14751522 - MTEa LTR MaLR -2 377 331 1 1397 1042 213 210 29 chr12 106506008 106506133 -14751397 + ORR1D2 LTR MaLR 3 145 -225 1 1397 414 0 0 0 chr12 106506133 106506179 -14751351 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1397 1042 213 210 29 chr12 106506179 106506363 -14751167 + ORR1D2 LTR MaLR 146 367 -3 1 1397 1063 250 138 60 chr12 106506363 106506659 -14750871 - MTEa LTR MaLR -49 330 2 1 1397 414 263 218 0 chr12 106506680 106506813 -14750717 - RSINE1 SINE B4 -1 164 3 1 1397 223 333 35 0 chr12 106507505 106507592 -14749938 + MIRc SINE MIR 21 110 -158 1 1397 269 256 75 60 chr12 106507825 106507958 -14749572 - MER5A1 DNA MER1_type -9 157 23 2 1397 465 19 0 0 chr12 106508115 106508169 -14749361 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1397 1310 256 21 0 chr12 106508184 106508473 -14749057 - MTEa LTR MaLR -83 296 2 2 1397 330 232 14 0 chr12 106508572 106508641 -14748889 - RSINE1 SINE B4 -51 114 45 2 1397 186 412 10 0 chr12 106508680 106508782 -14748748 + MER5B DNA MER1_type 75 177 -1 2 1397 1391 85 26 5 chr12 106508786 106508975 -14748555 + B2_Mm2 SINE B2 1 193 -2 2 1397 182 290 16 31 chr12 106509761 106509825 -14747705 - MIR SINE MIR -63 145 83 2 1397 712 251 16 50 chr12 106510169 106510367 -14747163 + B3A SINE B2 28 198 0 2 1397 2475 206 103 11 chr12 106510378 106510942 -14746588 - RLTR18 LTR ERVK 0 616 1 2 1397 638 240 33 7 chr12 106510943 106511094 -14746436 - RLTR18-int LTR ERVK -1 5360 5206 2 1397 415 295 4 8 chr12 106511272 106511415 -14746115 - L1MA4 LINE L1 -377 5923 5741 2 1397 226 253 0 94 chr12 106511877 106511973 -14745557 + LTR50 LTR ERVL 163 249 -546 3 1397 2269 95 6 25 chr12 106512165 106512490 -14745040 - ORR1A2 LTR MaLR -8 319 1 3 1397 202 287 44 44 chr12 106513741 106513832 -14743698 + (CATG)n Simple_repeat Simple_repeat 2 92 0 3 1397 646 236 188 33 chr12 106513839 106514084 -14743446 - B4 SINE B4 -8 284 2 3 1397 227 306 142 91 chr12 106515730 106515906 -14741624 - LTR16A1 LTR ERVL -261 195 11 3 1397 194 167 23 45 chr12 106516370 106516414 -14741116 - L3b LINE CR1 -1 481 439 3 1397 208 239 22 0 chr12 106516438 106516484 -14741046 + CT-rich Low_complexity Low_complexity 3 49 0 3 1397 345 196 36 73 chr12 106516485 106516593 -14740937 - PB1D10 SINE Alu -1 126 6 3 1397 218 227 17 17 chr12 106516914 106517044 -14740486 + CT-rich Low_complexity Low_complexity 1 130 0 3 1397 345 289 83 21 chr12 106517044 106517189 -14740341 - HAL1-3A_ME LINE L1 -421 2437 2284 3 1397 186 206 27 14 chr12 106517189 106517263 -14740267 + CT-rich Low_complexity Low_complexity 4 78 0 4 1397 319 310 15 27 chr12 106517285 106517405 -14740125 - B1F1 SINE Alu 0 120 3 4 1397 193 320 93 0 chr12 106518303 106518400 -14739130 - MIR SINE MIR -62 146 41 4 1397 196 275 128 40 chr12 106519551 106519676 -14737854 - L2 LINE L2 -3034 385 250 4 1397 222 315 134 41 chr12 106519870 106520042 -14737488 + L2b LINE L2 2994 3181 -194 4 1397 537 135 0 0 chr12 106520639 106520728 -14736802 + (TTCA)n Simple_repeat Simple_repeat 3 91 0 4 1397 1232 298 59 20 chr12 106521168 106521678 -14735852 + Lx8 LINE L1 6792 7321 -152 4 1397 250 333 0 0 chr12 106521685 106521763 -14735767 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1397 207 194 0 0 chr12 106522925 106522961 -14734569 + MIR SINE MIR 222 257 -5 4 1397 189 360 40 0 chr12 106523006 106523081 -14734449 - L2a LINE L2 -11 3415 3338 4 1397 2379 107 58 56 chr12 106523125 106523502 -14734028 + ORR1C1 LTR MaLR 1 378 0 5 1397 237 354 17 84 chr12 106523550 106523729 -14733801 - MIRb SINE MIR -96 172 6 5 1397 240 266 62 90 chr12 106525126 106525304 -14732226 + RLTR21 LTR ERVK 1082 1254 -318 5 1397 866 235 27 5 chr12 106526068 106526252 -14731278 - B3 SINE B2 -28 188 1 5 1397 282 326 40 30 chr12 106526260 106526361 -14731169 + MIRb SINE MIR 70 171 -97 5 1397 900 286 84 15 chr12 106527203 106527476 -14730054 + B4 SINE B4 1 292 0 5 1397 201 240 0 0 chr12 106527476 106527526 -14730004 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1397 1263 72 0 0 chr12 106527526 106527706 -14729824 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 5 1397 640 221 0 80 chr12 106527728 106527866 -14729664 - RSINE1 SINE B4 -36 129 3 5 1397 184 318 90 30 chr12 106528364 106528497 -14729033 + L2c LINE L2 3039 3179 -208 5 1397 246 246 31 0 chr12 106528512 106528577 -14728953 + C-rich Low_complexity Low_complexity 1 67 0 6 1397 288 312 62 55 chr12 106529310 106529456 -14728074 - MIR SINE MIR -56 206 60 6 1397 651 241 36 0 chr12 106529559 106529696 -14727834 - ID_B1 SINE B4 0 224 83 6 1397 996 224 74 45 chr12 106529699 106529942 -14727588 + ORR1D2 LTR MaLR 5 254 -116 6 1397 601 286 105 123 chr12 106530053 106530435 -14727095 + MTE2a LTR MaLR 5 379 0 6 1397 262 308 68 15 chr12 106531008 106531140 -14726390 + ORR1E LTR MaLR 11 149 -210 6 1397 358 257 0 79 chr12 106532088 106532202 -14725328 + PB1D10 SINE Alu 5 109 -8 6 1397 658 279 109 26 chr12 106532348 106532613 -14724917 - B4 SINE B4 -4 288 2 6 1397 446 256 103 43 chr12 106532620 106532741 -14724789 - L1MA7 LINE L1 -52 6239 6106 6 1397 3203 55 8 5 chr12 106532741 106533140 -14724390 + MTB LTR MaLR 1 400 0 6 1397 446 256 103 43 chr12 106533140 106533170 -14724360 - L1MA7 LINE L1 -186 6105 6079 6 1397 397 250 0 0 chr12 106533170 106533250 -14724280 - ID4_ SINE ID 0 83 4 7 1397 446 256 103 43 chr12 106533250 106533350 -14724180 - L1MA7 LINE L1 -213 6078 5972 6 1397 325 319 37 0 chr12 106533807 106533942 -14723588 - MLT1C LTR MaLR -57 410 271 7 1397 2226 161 60 12 chr12 106534076 106534478 -14723052 - MTC LTR MaLR 0 421 1 7 1397 259 264 125 0 chr12 106534480 106534552 -14722978 - MLT1C LTR MaLR -377 90 10 7 1397 304 273 22 22 chr12 106534573 106534663 -14722867 + MLT1A1 LTR MaLR 36 125 -283 7 1397 645 222 87 35 chr12 106535686 106535859 -14721671 - B4A SINE B4 -108 184 3 7 1397 636 249 16 48 chr12 106536290 106536473 -14721057 + Kanga11a DNA Tc2 169 323 -406 7 1397 1510 131 0 13 chr12 106536675 106536899 -14720631 + URR1B DNA MER1_type 1 221 -4 7 1397 901 205 3 175 chr12 106537223 106537543 -14719987 - ORR1B1 LTR MaLR -126 268 4 7 1397 1257 61 0 0 chr12 106537724 106537904 -14719626 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1397 420 172 0 0 chr12 106537920 106538007 -14719523 + (TA)n Simple_repeat Simple_repeat 2 88 0 7 1397 3466 82 2 39 chr12 106538295 106538788 -14718742 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1397 55657 15 6 5 chr12 106538788 106545256 -14712274 - IAPEz-int LTR ERVK 0 6481 9 8 1397 3463 80 2 39 chr12 106545257 106545750 -14711780 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1397 360 281 142 87 chr12 106545842 106546052 -14711478 - MLT1J LTR MaLR -203 309 85 8 1397 2547 144 10 0 chr12 106546052 106546440 -14711090 - ORR1B1 LTR MaLR -2 392 1 8 1397 360 281 142 87 chr12 106546440 106546482 -14711048 - MLT1J LTR MaLR -428 84 43 8 1397 1889 162 6 35 chr12 106547209 106547548 -14709982 + ORR1A4 LTR MaLR 1 329 0 8 1397 3073 162 22 54 chr12 106547549 106548142 -14709388 + ORR1A4-int LTR MaLR 2 575 -1388 8 1397 5176 165 28 35 chr12 106548142 106549156 -14708374 + RMER12 LTR ERVK 1 1383 -189 8 1397 470 245 153 13 chr12 106549174 106549331 -14708199 + RMER12 LTR ERVK 1142 1320 -2 8 1397 882 162 52 143 chr12 106549335 106549587 -14707943 + ORR1A4-int LTR MaLR 572 800 -1163 8 1397 1322 175 59 8 chr12 106549387 106549623 -14707907 + MT2B LTR ERVL 18 265 -336 8 1397 1799 130 35 18 chr12 106549604 106550118 -14707412 + ORR1A4-int LTR MaLR 1266 1505 -458 8 1397 272 304 34 15 chr12 106550263 106550344 -14707186 + PB1D10 SINE Alu 2 86 -228 8 1397 252 320 31 39 chr12 106550272 106550399 -14707131 + ID_B1 SINE B4 95 220 -4 8 1397 258 220 20 0 chr12 106550422 106550472 -14707058 + ID4_ SINE ID 1 51 -32 8 1397 1639 202 88 6 chr12 106552306 106552659 -14704871 - ORR1C2 LTR MaLR -2 382 1 9 1397 618 241 15 4 chr12 106553120 106553589 -14703941 + (TGGA)n Simple_repeat Simple_repeat 1 474 0 9 1397 489 17 0 0 chr12 106554028 106554086 -14703444 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 1397 401 264 0 0 chr12 106554087 106554174 -14703356 - PB1 SINE Alu -30 97 11 9 1397 1550 153 145 3 chr12 106554461 106554750 -14702780 + RMER15 LTR ERVL 246 575 0 9 1397 718 253 5 38 chr12 106555337 106555411 -14702119 + MTD LTR MaLR 1 71 -348 9 1397 2396 134 17 44 chr12 106555411 106555816 -14701714 + ORR1B1 LTR MaLR 1 394 0 9 1397 718 253 5 38 chr12 106555816 106555919 -14701611 + MTD LTR MaLR 72 172 -247 9 1397 5926 62 19 1 chr12 106555919 106556712 -14700818 + RLTR22_Mus LTR ERVK 1 807 -1001 9 1397 1505 112 56 4 chr12 106556954 106557206 -14700324 + RLTR22_Mus LTR ERVK 1543 1807 -1 9 1397 787 178 8 0 chr12 106557207 106557336 -14700194 + MTD LTR MaLR 168 297 -122 9 1397 226 172 146 22 chr12 106557419 106557508 -14700022 - PB1D7 SINE Alu -16 104 5 9 1397 858 177 193 0 chr12 106557639 106557820 -14699710 - B3 SINE B2 0 216 1 9 1397 439 200 16 44 chr12 106558191 106558374 -14699156 + GA-rich Low_complexity Low_complexity 1 178 0 1 1397 1132 247 117 11 chr12 106559121 106559497 -14698033 + MTD LTR MaLR 4 419 0 1 1397 378 0 0 0 chr12 106560011 106560053 -14697477 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1397 245 382 29 23 chr12 106561354 106561528 -14696002 + MLT1F2 LTR MaLR 1 175 -385 1 1398 446 333 33 2 chr12 106561538 106561783 -14695747 + L1MA4 LINE L1 5669 5929 -371 1 1398 407 301 50 138 chr12 106561815 106562130 -14695400 + MLT1F2 LTR MaLR 155 487 -73 1 1398 2155 144 19 11 chr12 106563134 106563498 -14694032 - ORR1B2 LTR MaLR 0 367 1 1 1398 1035 156 39 34 chr12 106563670 106563876 -14693654 + URR1A DNA MER1_type 19 225 -1 1 1398 942 223 62 46 chr12 106563924 106564183 -14693347 + RMER15 LTR ERVL 1 263 -312 1 1398 246 135 0 0 chr12 106564188 106564225 -14693305 - ORR1C2 LTR MaLR -347 37 1 1 1398 326 221 140 50 chr12 106564232 106564332 -14693198 + RMER15 LTR ERVL 432 540 -35 1 1398 205 296 0 0 chr12 106564340 106564394 -14693136 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 1 1398 770 295 144 46 chr12 106565173 106565659 -14691871 + MLT1F2 LTR MaLR 2 627 -53 1 1398 920 259 123 0 chr12 106565666 106565917 -14691613 + B4A SINE B4 9 290 -2 1 1398 619 211 12 0 chr12 106565927 106566093 -14691437 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 1398 333 118 0 0 chr12 106566631 106566682 -14690848 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1398 325 246 0 0 chr12 106567015 106567080 -14690450 - B4A SINE B4 -221 71 7 1 1398 551 201 22 0 chr12 106567140 106567367 -14690163 + (CA)n Simple_repeat Simple_repeat 1 232 0 1 1398 338 61 20 0 chr12 106567367 106567416 -14690114 + HAL1-3A_ME LINE L1 1976 2025 -833 1 1398 296 273 0 0 chr12 106570444 106570510 -14687020 - L3 LINE CR1 -101 4388 4323 1 1398 234 213 65 16 chr12 106571435 106571497 -14686033 - L1MA5 LINE L1 -102 6198 6134 1 1398 1009 37 15 0 chr12 106571561 106571695 -14685835 + (GA)n Simple_repeat Simple_repeat 2 137 0 1 1398 295 307 44 0 chr12 106571745 106571882 -14685648 - L1MA5 LINE L1 -159 6141 5999 1 1398 1341 286 70 52 chr12 106571944 106572442 -14685088 + MT2A LTR ERVL 27 533 0 1 1398 680 269 72 9 chr12 106572442 106572663 -14684867 - L1MA5 LINE L1 -405 5895 5661 1 1398 480 346 47 56 chr12 106572706 106572920 -14684610 + B4A SINE B4 79 290 -2 1 1398 342 0 0 0 chr12 106572964 106573002 -14684528 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1398 278 206 0 14 chr12 106574785 106574859 -14682671 + C-rich Low_complexity Low_complexity 4 76 0 1 1398 25 99 0 0 chr12 106575309 106575390 -14682140 + GC_rich Low_complexity Low_complexity 1 81 0 1 1398 264 270 0 0 chr12 106576116 106576179 -14681351 - MIRm SINE MIR -123 153 91 1 1398 402 21 0 0 chr12 106580358 106580405 -14677125 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1398 615 27 0 0 chr12 106582539 106582612 -14674918 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 1398 2030 104 6 21 chr12 106583344 106583669 -14673861 + RLTR8 LTR ERVK 46 365 0 1 1398 699 139 0 0 chr12 106583696 106583811 -14673719 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1398 841 205 19 0 chr12 106583875 106584036 -14673494 + B3 SINE B2 1 164 -52 1 1398 411 21 0 0 chr12 106584036 106584084 -14673446 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1398 841 205 19 0 chr12 106584149 106584310 -14673220 + B3 SINE B2 1 164 -52 1 1398 312 27 0 0 chr12 106584310 106584347 -14673183 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1398 514 335 92 2 chr12 106584378 106584663 -14672867 - L1MA4 LINE L1 -353 5938 5631 1 1398 396 0 0 0 chr12 106584685 106584729 -14672801 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 1 1398 1145 83 35 6 chr12 106584730 106584899 -14672631 - B2_Mm2 SINE B2 -21 174 1 1 1398 2224 79 25 9 chr12 106586604 106586924 -14670606 - ORR1A2 LTR MaLR -2 325 1 1 1398 609 224 0 0 chr12 106587665 106587790 -14669740 + ID_B1 SINE B4 99 223 -1 1 1398 486 0 0 0 chr12 106587793 106587847 -14669683 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1 1398 423 78 0 0 chr12 106588110 106588174 -14669356 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 1 1398 189 0 0 0 chr12 106588175 106588196 -14669334 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1398 873 283 43 107 chr12 106588313 106588705 -14668825 + MTE2a LTR MaLR 11 377 -2 1 1398 611 164 139 0 chr12 106589610 106589732 -14667798 + B1_Mur4 SINE Alu 5 143 -7 1 1398 255 61 0 0 chr12 106589742 106589775 -14667755 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1398 427 272 0 58 chr12 106591250 106591371 -14666159 + PB1D10 SINE Alu 1 114 -3 1 1398 272 349 35 92 chr12 106591840 106591982 -14665548 - B4 SINE B4 -116 176 43 1 1398 340 77 15 15 chr12 106593320 106593386 -14664144 + (TTTG)n Simple_repeat Simple_repeat 3 68 0 1 1398 822 53 9 0 chr12 106593386 106593499 -14664031 - B1_Mus1 SINE Alu 0 148 35 1 1398 540 280 84 17 chr12 106594299 106594477 -14663053 + MTE2b LTR MaLR 5 194 -185 1 1398 497 144 10 0 chr12 106595784 106595888 -14661642 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1398 480 276 16 8 chr12 106597282 106597410 -14660120 - RSINE1 SINE B4 -35 130 2 1 1398 364 279 17 43 chr12 106597413 106597529 -14660001 - PB1 SINE Alu 0 127 15 1 1398 965 230 39 5 chr12 106597928 106598133 -14659397 - B3 SINE B2 -4 212 1 1 1398 755 218 13 10 chr12 106598678 106598855 -14658675 + ORR1E LTR MaLR 16 182 -192 1 1398 529 246 48 87 chr12 106598855 106599086 -14658444 + ORR1E LTR MaLR 149 370 0 1 1398 701 262 23 14 chr12 106599155 106599372 -14658158 - ID_B1 SINE B4 -1 223 5 1 1398 183 80 0 0 chr12 106599939 106599964 -14657566 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1 1398 550 358 51 35 chr12 106600295 106600550 -14656980 + MER2 DNA MER2_type 87 345 0 1 1398 264 284 135 0 chr12 106601117 106601191 -14656339 - MLT1A0 LTR MaLR -83 282 199 1 1398 545 321 20 30 chr12 106601633 106601832 -14655698 - MLT1A0 LTR MaLR -165 200 4 1 1398 359 89 18 0 chr12 106602618 106602674 -14654856 + (CCCCCT)n Simple_repeat Simple_repeat 6 62 0 1 1398 523 211 29 43 chr12 106603174 106603313 -14654217 + B4 SINE B4 18 154 -138 1 1398 1333 197 49 33 chr12 106603316 106603620 -14653910 - MTE2b LTR MaLR -69 310 2 1 1398 904 261 70 7 chr12 106605012 106605282 -14652248 + B4 SINE B4 1 287 -5 1 1398 270 158 30 24 chr12 106605554 106605621 -14651909 - MIRc SINE MIR -88 188 118 1 1398 620 322 167 18 chr12 106606095 106606910 -14650620 - L1MC4 LINE L1 -271 7611 6699 1 1398 524 154 10 0 chr12 106607983 106608087 -14649443 + (TCCA)n Simple_repeat Simple_repeat 4 108 0 1 1398 324 143 0 0 chr12 106608085 106608141 -14649389 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1398 299 182 13 0 chr12 106608139 106608216 -14649314 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 1 1398 227 282 12 49 chr12 106608645 106608727 -14648803 + L2a LINE L2 3338 3416 -10 1 1398 268 280 40 13 chr12 106608759 106608835 -14648695 + L2a LINE L2 3334 3411 -15 1 1398 330 248 145 20 chr12 106610509 106610661 -14646869 + RLTR21 LTR ERVK 1084 1254 -318 1 1398 347 311 88 12 chr12 106610637 106610837 -14646693 - B4A SINE B4 0 292 73 1 1398 211 254 14 40 chr12 106610943 106611017 -14646513 - RSINE1 SINE B4 -93 72 1 1 1398 316 229 23 57 chr12 106611023 106611111 -14646419 - B4 SINE B4 -206 86 2 1 1398 240 307 70 9 chr12 106611940 106612055 -14645475 - MIRb SINE MIR -118 150 29 1 1398 541 326 64 32 chr12 106612283 106612470 -14645060 - RMER30 DNA MER1_type -1 201 9 1 1398 1073 258 46 18 chr12 106613386 106613666 -14643864 + B4 SINE B4 5 292 0 1 1398 259 276 53 0 chr12 106614869 106614945 -14642585 - MTEa LTR MaLR 0 379 300 1 1398 363 333 32 18 chr12 106616246 106616466 -14641064 + L1ME3A LINE L1 5811 6033 -140 1 1398 260 91 23 0 chr12 106616514 106616558 -14640972 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1398 226 231 15 0 chr12 106616993 106617058 -14640472 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1398 1312 228 150 8 chr12 106617103 106617470 -14640060 - MTD LTR MaLR 0 419 1 1 1398 304 385 39 33 chr12 106618146 106618326 -14639204 - L1M5 LINE L1 -556 5684 5504 1 1398 288 0 0 0 chr12 106618650 106618682 -14638848 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1398 962 247 73 56 chr12 106618686 106618856 -14638674 - B4 SINE B4 0 292 128 1 1398 2901 72 25 30 chr12 106618856 106619258 -14638272 - MTB LTR MaLR 0 400 1 1 1398 962 247 73 56 chr12 106619258 106619374 -14638156 - B4 SINE B4 -165 127 1 1 1398 332 292 86 21 chr12 106620455 106620595 -14636935 - HAL1-3A_ME LINE L1 -419 2439 2291 1 1398 432 0 0 0 chr12 106620907 106620955 -14636575 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1398 330 0 60 0 chr12 106621828 106621878 -14635652 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1398 816 209 0 0 chr12 106622156 106622295 -14635235 - ID_B1 SINE B4 0 224 86 1 1398 216 303 0 0 chr12 106622780 106622912 -14634618 + (TG)n Simple_repeat Simple_repeat 1 132 0 1 1398 253 298 64 48 chr12 106622912 106623162 -14634368 + RMER12 LTR ERVK 735 988 -334 1 1398 353 283 0 6 chr12 106623181 106623362 -14634168 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1398 302 346 92 40 chr12 106623362 106623612 -14633918 + RMER12 LTR ERVK 769 1031 -291 1 1398 353 332 67 54 chr12 106623907 106624146 -14633384 + LTR84b LTR ERVL 1 242 -519 1 1398 189 107 0 0 chr12 106625195 106625223 -14632307 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1398 492 233 39 0 chr12 106625224 106625353 -14632177 - RSINE1 SINE B4 -21 144 11 1 1398 408 40 0 0 chr12 106625544 106625594 -14631936 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1398 286 335 112 15 chr12 106625610 106625816 -14631714 + L1M4 LINE L1 3694 3919 -2227 1 1398 508 307 91 28 chr12 106626140 106626712 -14630818 + L1M4 LINE L1 4555 5172 -974 1 1398 295 271 0 7 chr12 106626716 106626803 -14630727 + ID4 SINE ID 3 87 -65 1 1398 448 180 22 22 chr12 106626812 106627044 -14630486 + GA-rich Low_complexity Low_complexity 1 232 0 1 1398 216 246 0 0 chr12 106627051 106627071 -14630459 + A-rich Low_complexity Low_complexity 5 24 0 2 1398 1269 41 0 0 chr12 106627071 106627218 -14630312 + B1_Mus2 SINE Alu 1 147 0 2 1398 216 246 0 0 chr12 106627218 106627258 -14630272 + A-rich Low_complexity Low_complexity 25 64 0 2 1398 256 308 52 8 chr12 106627264 106627398 -14630132 + L1M4 LINE L1 5163 5302 -844 1 1398 1067 256 14 68 chr12 106627829 106628123 -14629407 + B4A SINE B4 3 280 -12 2 1398 207 0 0 0 chr12 106628152 106628175 -14629355 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1398 464 0 18 0 chr12 106628175 106628230 -14629300 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1398 555 291 62 39 chr12 106628277 106628456 -14629074 - Arthur1B DNA Tip100 -835 390 208 2 1398 183 256 0 44 chr12 106629192 106629237 -14628293 + L2b LINE L2 3322 3364 -11 2 1398 404 163 12 0 chr12 106629592 106629678 -14627852 + (TGG)n Simple_repeat Simple_repeat 3 89 0 2 1398 3493 30 2 0 chr12 106629706 106630101 -14627429 - MTA_Mm LTR MaLR 0 396 1 2 1398 3587 20 2 0 chr12 106630437 106630832 -14626698 + MTA_Mm LTR MaLR 1 396 0 2 1398 546 255 104 7 chr12 106631125 106631279 -14626251 + MLT1A0 LTR MaLR 123 291 -74 2 1398 333 0 0 0 chr12 106632511 106632548 -14624982 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1398 1620 163 55 7 chr12 106632548 106632839 -14624691 - MTD LTR MaLR -30 389 85 2 1398 332 271 128 6 chr12 106633081 106633200 -14624330 - L2a LINE L2 0 3426 3242 2 1398 28 0 0 0 chr12 106633463 106633491 -14624039 + AT_rich Low_complexity Low_complexity 1 28 0 2 1398 228 308 65 37 chr12 106633904 106634012 -14623518 + MIRb SINE MIR 84 194 -74 2 1398 1509 104 5 14 chr12 106634785 106634999 -14622531 + URR1A DNA MER1_type 3 214 -12 2 1398 595 260 64 54 chr12 106635015 106635218 -14622312 + B4A SINE B4 33 237 -55 2 1398 263 298 0 7 chr12 106635285 106635427 -14622103 + (CATATA)n Simple_repeat Simple_repeat 1 141 0 2 1398 1295 276 26 26 chr12 106635429 106635778 -14621752 - MTE2b LTR MaLR -30 349 1 2 1398 447 19 0 0 chr12 106636397 106636449 -14621081 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1398 770 258 58 71 chr12 106637337 106637634 -14619896 + MTE2b LTR MaLR 2 298 -81 2 1398 781 222 46 12 chr12 106637881 106638070 -14619460 + MTE2b LTR MaLR 159 379 0 2 1398 403 327 48 39 chr12 106638081 106638310 -14619220 + MLT1L LTR MaLR 360 590 -20 2 1398 854 180 0 6 chr12 106639001 106639180 -14618350 + CT-rich Low_complexity Low_complexity 3 180 0 2 1398 423 268 35 18 chr12 106639190 106639304 -14618226 - PB1D10 SINE Alu 0 117 2 2 1398 369 62 0 0 chr12 106639585 106639633 -14617897 + (TTA)n Simple_repeat Simple_repeat 2 49 0 2 1398 240 200 0 0 chr12 106640991 106641051 -14616479 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1398 344 105 310 26 chr12 106643132 106643248 -14614282 - B2_Mm2 SINE B2 0 195 47 2 1398 1274 101 17 0 chr12 106643295 106643473 -14614057 - B2_Mm2 SINE B2 -13 182 2 2 1398 288 77 0 0 chr12 106643496 106643535 -14613995 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 2 1398 534 321 81 33 chr12 106643566 106643837 -14613693 - B4 SINE B4 -8 284 1 2 1398 270 0 0 0 chr12 106644002 106644032 -14613498 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1398 379 320 121 58 chr12 106644209 106644571 -14612959 + LTR16B LTR ERVL 1 399 -81 2 1398 2107 247 84 29 chr12 106644579 106645355 -14612175 - Lx9 LINE L1 -15 7629 6780 2 1398 561 257 143 3 chr12 106645323 106645541 -14611989 + Lx9 LINE L1 6429 6756 -888 2 1398 6371 147 62 4 chr12 106646617 106647890 -14609640 - Lx4B LINE L1 -6 6994 5656 2 1398 1941 202 16 79 chr12 106648628 106648963 -14608567 + MTD LTR MaLR 1 320 -99 2 1398 1197 51 0 0 chr12 106648963 106649101 -14608429 - B1_Mus1 SINE Alu -9 139 2 2 1398 1941 202 16 79 chr12 106649101 106649210 -14608320 + MTD LTR MaLR 321 417 -2 2 1398 2234 115 12 3 chr12 106649220 106649543 -14607987 - ORR1A3 LTR MaLR 0 326 1 2 1398 191 273 18 0 chr12 106649856 106649911 -14607619 - MIR SINE MIR -69 139 84 2 1398 3074 71 20 0 chr12 106650293 106650685 -14606845 - MTB LTR MaLR 0 400 1 2 1398 840 321 14 18 chr12 106651305 106651590 -14605940 - RMER15 LTR ERVL -40 535 252 2 1398 355 306 63 71 chr12 106651826 106652079 -14605451 - MIRb SINE MIR -16 252 2 2 1398 246 62 0 0 chr12 106652086 106652118 -14605412 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 2 1398 303 256 17 44 chr12 106652575 106652755 -14604775 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 2 1398 446 241 34 34 chr12 106652919 106653095 -14604435 + (CATA)n Simple_repeat Simple_repeat 4 179 0 2 1398 399 127 0 0 chr12 106653118 106653181 -14604349 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1398 223 204 46 9 chr12 106653210 106653319 -14604211 + (CATA)n Simple_repeat Simple_repeat 4 116 0 2 1398 383 260 40 23 chr12 106653347 106653581 -14603949 + (CA)n Simple_repeat Simple_repeat 1 238 0 2 1398 1346 66 22 5 chr12 106653662 106653846 -14603684 - B2_Mm2 SINE B2 -3 192 6 2 1398 252 277 50 14 chr12 106653855 106653994 -14603536 + (CATA)n Simple_repeat Simple_repeat 2 145 0 2 1398 330 254 0 0 chr12 106654646 106654772 -14602758 + (TG)n Simple_repeat Simple_repeat 1 126 0 2 1398 414 270 0 0 chr12 106654797 106654975 -14602555 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1398 233 256 12 30 chr12 106654987 106655156 -14602374 + (TATATG)n Simple_repeat Simple_repeat 6 171 0 2 1398 841 264 0 73 chr12 106655181 106655426 -14602104 - B4 SINE B4 0 292 66 2 1398 669 198 47 47 chr12 106655459 106655582 -14601948 - MTC LTR MaLR -8 413 291 2 1398 2356 136 28 5 chr12 106655582 106655975 -14601555 + RLTR28 LTR ERVL 1 402 -122 2 1398 246 32 0 0 chr12 106655983 106656014 -14601516 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1398 349 106 0 0 chr12 106656016 106656063 -14601467 + RLTR28 LTR ERVL 464 510 -14 2 1398 1478 174 59 4 chr12 106656080 106656334 -14601196 - MTC LTR MaLR -153 268 1 2 1398 277 164 129 16 chr12 106656334 106656396 -14601134 - B4 SINE B4 -222 70 2 2 1398 269 201 232 92 chr12 106656455 106656619 -14600911 - RMER17C LTR ERVK -223 187 1 2 1398 188 340 140 0 chr12 106657215 106657315 -14600215 + MIR SINE MIR 17 130 -78 2 1398 388 324 182 30 chr12 106657507 106657803 -14599727 - MER2 DNA MER2_type 0 345 5 2 1398 581 174 16 0 chr12 106657861 106657982 -14599548 + (CATA)n Simple_repeat Simple_repeat 2 124 0 2 1398 515 78 13 0 chr12 106657995 106658072 -14599458 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1398 325 320 64 39 chr12 106658089 106658245 -14599285 - MLT2C1 LTR ERVL -21 376 217 2 1398 645 49 0 0 chr12 106658421 106658502 -14599028 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 2 1398 1209 106 0 0 chr12 106658502 106658682 -14598848 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1398 224 304 84 46 chr12 106658708 106658839 -14598691 - ID_B1 SINE B4 -76 148 13 2 1398 254 263 13 13 chr12 106659185 106659262 -14598268 - MLT2C1 LTR ERVL -315 82 6 2 1398 185 312 100 0 chr12 106659623 106659703 -14597827 + L2 LINE L2 1916 2003 -1416 2 1398 513 115 0 0 chr12 106660933 106661011 -14596519 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1398 216 189 0 0 chr12 106661011 106661048 -14596482 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 2 1398 279 0 0 0 chr12 106661049 106661080 -14596450 + (TATG)n Simple_repeat Simple_repeat 1 31 0 2 1398 367 339 62 11 chr12 106661350 106661526 -14596004 + LTR33B LTR ERVL 3 187 -316 2 1398 350 346 141 21 chr12 106661712 106661937 -14595593 + LTR16A LTR ERVL 83 336 -115 2 1398 1230 228 91 19 chr12 106661937 106662246 -14595284 - ORR1D2 LTR MaLR 0 370 40 2 1398 656 224 2 0 chr12 106662676 106663105 -14594425 + (TG)n Simple_repeat Simple_repeat 1 430 0 2 1398 1041 234 52 31 chr12 106663105 106663334 -14594196 - B4 SINE B4 0 292 59 2 1398 342 0 0 0 chr12 106663435 106663473 -14594057 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1398 252 0 0 0 chr12 106663473 106663500 -14594030 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1398 418 318 52 69 chr12 106664103 106664389 -14593141 + MER57E2 LTR ERV1 28 356 -46 2 1398 1011 161 0 0 chr12 106664389 106664569 -14592961 + GA-rich Low_complexity Low_complexity 1 180 0 2 1398 576 0 0 0 chr12 106664569 106664633 -14592897 + (GAA)n Simple_repeat Simple_repeat 1 64 0 2 1398 228 67 0 0 chr12 106664633 106664662 -14592868 + (TGG)n Simple_repeat Simple_repeat 2 31 0 2 1398 418 299 42 74 chr12 106664662 106664696 -14592834 + MER57E2 LTR ERV1 357 381 -21 2 1398 438 20 0 0 chr12 106665284 106665335 -14592195 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1398 230 321 105 64 chr12 106665854 106666167 -14591363 + Charlie12 DNA MER1_type 7 332 -2541 2 1398 370 289 0 24 chr12 106665923 106666008 -14591522 - RMER30 DNA MER1_type -113 89 7 2 1398 1325 82 21 27 chr12 106666326 106666514 -14591016 + B2_Mm2 SINE B2 1 187 -8 2 1398 248 0 0 30 chr12 106666580 106666613 -14590917 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1398 844 275 93 124 chr12 106666719 106667234 -14590296 - RMER5 LTR ERV1 -3 531 33 2 1398 238 372 23 11 chr12 106667309 106667396 -14590134 - LTR16A LTR ERVL -188 263 176 2 1398 716 248 77 14 chr12 106667437 106667646 -14589884 - RLTR18B LTR ERVK -2 510 289 2 1398 903 234 82 72 chr12 106667760 106668208 -14589322 - RMER15 LTR ERVL 0 575 1 2 1398 327 49 0 0 chr12 106669262 106669303 -14588227 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1398 966 275 64 56 chr12 106669311 106669359 -14588171 - B4A SINE B4 -24 268 207 2 1398 2387 108 6 0 chr12 106669359 106669684 -14587846 + ORR1A2 LTR MaLR 1 327 0 2 1398 966 275 64 56 chr12 106669684 106669901 -14587629 - B4A SINE B4 -86 206 1 2 1398 797 281 44 114 chr12 106670391 106670424 -14587106 + ORR1E LTR MaLR 4 27 -332 2 1398 239 54 0 26 chr12 106670424 106670462 -14587068 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1398 797 281 44 114 chr12 106670462 106670789 -14586741 + ORR1E LTR MaLR 28 339 -20 2 1398 314 45 23 0 chr12 106671452 106671496 -14586034 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 2 1398 345 127 0 18 chr12 106671520 106671576 -14585954 - B2_Mm2 SINE B2 -94 101 47 2 1398 1274 109 11 0 chr12 106671660 106671835 -14585695 - B2_Mm1t SINE B2 -14 179 3 2 1398 334 328 70 56 chr12 106672547 106672905 -14584625 + L1MEg LINE L1 2972 3169 -2974 3 1398 943 212 177 36 chr12 106672972 106673221 -14584309 - B4 SINE B4 -6 286 3 3 1398 246 318 152 6 chr12 106673298 106673469 -14584061 + L1MD LINE L1 5207 5402 -744 3 1398 1223 216 153 18 chr12 106673673 106674007 -14583523 + MTE2b LTR MaLR 1 379 0 3 1398 347 270 112 16 chr12 106674489 106674720 -14582810 + L1MEg LINE L1 2776 3038 -3108 3 1398 495 274 70 84 chr12 106674720 106674947 -14582583 + B4 SINE B4 1 224 -68 3 1398 534 283 77 12 chr12 106674902 106675070 -14582460 - MTE2a LTR MaLR -5 374 196 3 1398 315 209 11 29 chr12 106675076 106675359 -14582171 + (TG)n Simple_repeat Simple_repeat 1 277 0 3 1398 214 254 18 0 chr12 106675391 106675446 -14582084 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1398 216 290 64 11 chr12 106675730 106675824 -14581706 + L2 LINE L2 2319 2417 -1002 3 1398 330 45 0 0 chr12 106675866 106675910 -14581620 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 3 1398 618 89 0 0 chr12 106675983 106676073 -14581457 + (TG)n Simple_repeat Simple_repeat 2 91 0 3 1398 278 250 14 14 chr12 106676075 106676144 -14581386 - ID4_ SINE ID -14 69 1 3 1398 266 290 154 27 chr12 106676151 106676261 -14581269 - PB1 SINE Alu -3 124 1 3 1398 295 317 37 37 chr12 106676287 106676395 -14581135 - B4A SINE B4 -183 109 2 3 1398 290 250 12 12 chr12 106676769 106676850 -14580680 + ID4 SINE ID 2 82 -1 3 1398 510 325 84 34 chr12 106677005 106677301 -14580229 + MT2A LTR ERVL 88 398 -135 3 1398 390 271 81 27 chr12 106677300 106677448 -14580082 - RMER30 DNA MER1_type -40 162 7 3 1398 622 308 62 33 chr12 106677609 106677881 -14579649 + MLT1A LTR MaLR 2 281 -93 3 1398 457 287 101 49 chr12 106678285 106678552 -14578978 + B4A SINE B4 5 285 -7 3 1398 232 189 19 0 chr12 106678557 106678610 -14578920 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1398 995 194 74 96 chr12 106678935 106679336 -14578194 - MT2B2 LTR ERVL 0 584 16 3 1398 205 229 19 28 chr12 106679510 106679618 -14577912 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 1398 338 239 11 28 chr12 106679669 106679850 -14577680 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 1398 2485 131 59 3 chr12 106680061 106680451 -14577079 - MTC LTR MaLR -8 413 2 3 1398 911 141 219 6 chr12 106680555 106680733 -14576797 - B3 SINE B2 0 216 1 3 1398 5157 43 0 14 chr12 106682295 106682927 -14574603 + L1Md_F2 LINE L1 5960 6582 0 3 1398 645 317 54 5 chr12 106682958 106683161 -14574369 + B4 SINE B4 1 213 -79 3 1398 633 78 11 53 chr12 106683162 106683257 -14574273 + B1_Mus2 SINE Alu 51 141 -6 3 1398 266 333 44 53 chr12 106683211 106683325 -14574205 + B4 SINE B4 162 274 -18 3 1398 202 259 0 65 chr12 106683711 106683773 -14573757 + MIRm SINE MIR 219 276 0 3 1398 1458 210 65 38 chr12 106683954 106684295 -14573235 - ORR1E LTR MaLR -5 354 5 3 1398 965 267 151 14 chr12 106684610 106685047 -14572483 + RMER5 LTR ERV1 33 529 -5 3 1398 907 152 106 29 chr12 106685337 106685507 -14572023 + ORR1D1 LTR MaLR 4 186 -188 3 1398 446 218 6 49 chr12 106685507 106685690 -14571840 + CT-rich Low_complexity Low_complexity 3 177 0 3 1398 872 141 125 36 chr12 106685690 106685710 -14571820 + ORR1D1 LTR MaLR 166 184 -190 3 1398 360 0 0 0 chr12 106685710 106685750 -14571780 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1398 872 141 125 36 chr12 106685750 106685921 -14571609 + ORR1D1 LTR MaLR 185 374 0 3 1398 182 320 0 0 chr12 106685995 106686045 -14571485 + L2b LINE L2 3322 3371 -4 3 1398 889 228 6 0 chr12 106686134 106686296 -14571234 - RSINE1 SINE B4 -2 163 1 3 1398 203 309 61 10 chr12 106686401 106686499 -14571031 + MIR SINE MIR 13 120 -156 3 1398 724 286 18 50 chr12 106687372 106687593 -14569937 - B3 SINE B2 0 216 3 3 1398 3102 122 92 2 chr12 106687845 106688312 -14569218 + RLTR18B LTR ERVK 1 509 -3 3 1398 258 357 9 0 chr12 106688719 106688831 -14568699 + L1M4 LINE L1 4876 4988 -1158 3 1398 434 279 41 52 chr12 106688937 106689262 -14568268 + L1M4 LINE L1 5218 5540 -624 3 1398 3142 17 0 0 chr12 106689920 106690266 -14567264 - ORR1A0 LTR MaLR 0 346 1 3 1398 866 275 41 7 chr12 106690348 106690641 -14566889 + L1MD1 LINE L1 5670 5972 -270 3 1398 359 202 11 0 chr12 106690848 106690942 -14566588 + (CA)n Simple_repeat Simple_repeat 1 95 0 3 1398 1478 147 4 0 chr12 106691030 106691255 -14566275 + URR1A DNA MER1_type 1 226 0 3 1398 193 315 54 14 chr12 106691678 106691752 -14565778 - MIRb SINE MIR -103 165 89 3 1398 348 209 0 0 chr12 106692229 106692315 -14565215 + (CAG)n Simple_repeat Simple_repeat 3 88 0 3 1399 192 40 0 0 chr12 106693768 106693793 -14563737 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1399 564 15 0 0 chr12 106694308 106694373 -14563157 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 1399 190 246 51 34 chr12 106694588 106694647 -14562883 + L2b LINE L2 3316 3375 0 3 1399 216 119 16 33 chr12 106695053 106695114 -14562416 + (CCCCG)n Simple_repeat Simple_repeat 4 63 0 3 1399 227 174 21 21 chr12 106695369 106695416 -14562114 + ORR1B1-int LTR MaLR 949 995 -514 3 1399 362 366 62 29 chr12 106695625 106695833 -14561697 + MLT1H1 LTR MaLR 35 249 -306 3 1399 226 292 110 44 chr12 106696084 106696220 -14561310 - LTR78 LTR ERV1 -86 1218 1074 3 1399 290 335 75 35 chr12 106696554 106696780 -14560750 - MLT1C LTR MaLR -48 419 185 3 1399 216 238 95 24 chr12 106696963 106697055 -14560475 + MIRc SINE MIR 92 193 -69 3 1399 231 273 90 69 chr12 106697316 106697505 -14560025 - MER102b DNA MER1_type -27 314 122 3 1399 588 253 0 0 chr12 106697510 106697803 -14559727 + (TG)n Simple_repeat Simple_repeat 1 293 0 3 1399 756 293 17 34 chr12 106697810 106698107 -14559423 - B4A SINE B4 0 292 1 3 1399 3214 161 67 2 chr12 106699329 106699900 -14557630 - RLTR18 LTR ERVK -6 610 3 3 1399 337 274 34 62 chr12 106700581 106700760 -14556770 - HAL1-2a_MD LINE L1 -526 2498 2325 3 1399 261 125 0 64 chr12 106700778 106700872 -14556658 + (TGG)n Simple_repeat Simple_repeat 1 88 0 3 1399 285 335 80 6 chr12 106700879 106701041 -14556489 - L1MC1 LINE L1 -24 6309 6136 3 1399 915 260 115 63 chr12 106701066 106701236 -14556294 - L1MEc LINE L1 -4038 2364 2184 3 1399 3539 25 2 0 chr12 106701236 106701631 -14555899 - MTA_Mm LTR MaLR 0 396 1 3 1399 9676 24 0 1 chr12 106701631 106702730 -14554800 - MTA_Mm-int LTR MaLR 0 1098 1 3 1399 3473 33 2 0 chr12 106702730 106703124 -14554406 - MTA_Mm LTR MaLR 0 396 2 3 1399 915 260 115 63 chr12 106703124 106703567 -14553963 - L1MEc LINE L1 -4219 2183 1719 3 1399 636 231 59 12 chr12 106703568 106703784 -14553746 - L1MEc LINE L1 -4902 1606 1380 3 1399 520 251 118 103 chr12 106703800 106703995 -14553535 + B3A SINE B2 1 198 0 3 1399 273 324 134 41 chr12 106704012 106704520 -14553010 - L1MEc LINE L1 -5049 1353 799 3 1399 343 328 120 38 chr12 106704529 106704738 -14552792 - HAL1-3A_ME LINE L1 -658 2200 1975 3 1399 627 184 0 0 chr12 106704744 106704880 -14552650 + (TG)n Simple_repeat Simple_repeat 1 136 0 3 1399 655 187 0 9 chr12 106704880 106704993 -14552537 - B1_Mus2 SINE Alu -27 120 9 3 1399 353 313 62 50 chr12 106705003 106705262 -14552268 - L1MEc LINE L1 -5593 809 548 3 1399 321 294 11 23 chr12 106705885 106705972 -14551558 - B1_Mus1 SINE Alu -62 86 1 3 1399 188 259 146 90 chr12 106706914 106707003 -14550527 + L2b LINE L2 3264 3357 -18 3 1399 2314 103 22 0 chr12 106707762 106708082 -14549448 + ORR1A2 LTR MaLR 1 327 0 3 1399 4133 105 43 7 chr12 106708082 106708780 -14548750 + ORR1A2-int LTR MaLR 1 732 -526 3 1399 967 112 0 20 chr12 106708756 106708902 -14548628 - ORR1A2 LTR MaLR -184 143 1 3 1399 253 280 139 10 chr12 106709476 106709577 -14547953 - L3 LINE CR1 -46 4443 4330 3 1399 297 0 0 0 chr12 106710060 106710093 -14547437 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1399 230 274 16 0 chr12 106710193 106710255 -14547275 - ID4_ SINE ID -16 67 5 3 1399 191 267 26 13 chr12 106710403 106710479 -14547051 - L3 LINE CR1 -665 3824 3748 3 1399 236 282 307 11 chr12 106710490 106710666 -14546864 - LTR40a LTR ERVL 0 519 292 3 1399 609 279 31 40 chr12 106710712 106710940 -14546590 - B4A SINE B4 -50 242 17 3 1399 473 312 131 102 chr12 106710993 106711307 -14546223 + MTD LTR MaLR 81 403 -16 3 1399 412 304 114 16 chr12 106711328 106711512 -14546018 - B4 SINE B4 -84 208 7 3 1399 399 41 0 0 chr12 106711642 106711691 -14545839 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1399 313 303 55 73 chr12 106713191 106713355 -14544175 + L2b LINE L2 3215 3375 0 3 1399 189 0 0 0 chr12 106714091 106714112 -14543418 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1399 213 330 41 50 chr12 106714125 106714239 -14543291 - L2c LINE L2 -24 3351 3238 3 1399 223 385 19 9 chr12 106714362 106714467 -14543063 + MIRc SINE MIR 22 127 -141 3 1399 265 253 70 113 chr12 106715073 106715240 -14542290 + MIR SINE MIR 53 197 -71 3 1399 180 111 0 0 chr12 106716149 106716176 -14541354 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1399 454 269 111 7 chr12 106716813 106716948 -14540582 - RSINE1 SINE B4 -14 151 3 3 1399 4276 29 12 0 chr12 106717666 106718153 -14539377 - MT2_Mm LTR ERVL 0 493 1 3 1399 958 256 100 8 chr12 106718650 106718910 -14538620 + B4 SINE B4 8 291 -1 3 1399 1502 196 63 6 chr12 106718917 106719250 -14538280 - L1_Mur3 LINE L1 -236 5644 5293 3 1399 525 17 0 0 chr12 106719244 106719304 -14538226 + L1Md_F2 LINE L1 5526 5585 -298 3 1399 8234 43 5 1 chr12 106719305 106720296 -14537234 + L1Md_F2 LINE L1 5587 6581 -1 3 1399 273 188 49 12 chr12 106720296 106720377 -14537153 - L1_Mur3 LINE L1 -565 5315 5232 3 1399 453 230 6 27 chr12 106720384 106720567 -14536963 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1399 234 346 73 55 chr12 106720669 106720834 -14536696 + Tigger5 DNA MER2_type 10 177 -2229 3 1399 238 323 50 20 chr12 106720884 106720977 -14536553 + Tigger5 DNA MER2_type 2295 2390 -16 3 1399 1328 112 91 14 chr12 106720977 106721185 -14536345 + URR1B DNA MER1_type 2 225 0 3 1399 3787 50 4 40 chr12 106721307 106721804 -14535726 + L1_Mus2 LINE L1 6088 6566 0 3 1399 764 248 29 24 chr12 106722802 106723009 -14534521 + B3 SINE B2 2 209 -7 3 1399 414 0 0 0 chr12 106723186 106723232 -14534298 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1399 4694 127 60 48 chr12 106723246 106724120 -14533410 - RMER12 LTR ERVK -438 884 1 3 1399 1034 116 13 20 chr12 106725200 106725350 -14532180 + B1_Mur4 SINE Alu 1 149 -1 3 1399 454 250 57 19 chr12 106725564 106725670 -14531860 - B1F SINE Alu -38 111 2 3 1399 405 70 0 0 chr12 106727470 106727527 -14530003 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1399 414 0 0 0 chr12 106727527 106727572 -14529958 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1399 239 325 24 89 chr12 106727843 106728012 -14529518 - MIRm SINE MIR -41 235 78 4 1399 406 245 158 162 chr12 106729357 106729635 -14527895 + B4A SINE B4 2 278 -14 4 1399 608 263 29 35 chr12 106730016 106730189 -14527341 - RMER30 DNA MER1_type -13 189 18 4 1399 487 272 62 38 chr12 106730377 106730587 -14526943 + MER20 DNA MER1_type 3 217 -2 4 1399 249 33 0 0 chr12 106731567 106731597 -14525933 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 4 1399 454 214 0 43 chr12 106731676 106731769 -14525761 + PB1D7 SINE Alu 32 120 0 4 1399 324 275 188 0 chr12 106731776 106731914 -14525616 - MIR SINE MIR -10 252 89 4 1399 427 236 24 49 chr12 106733562 106733702 -14523828 + B4A SINE B4 2 145 -147 4 1399 1117 113 3 8 chr12 106733702 106733877 -14523653 + (GGAGA)n Simple_repeat Simple_repeat 1 176 -186 4 1399 1117 113 3 8 chr12 106733885 106734067 -14523463 + (GGAGA)n Simple_repeat Simple_repeat 177 362 0 4 1399 423 327 44 54 chr12 106734067 106734211 -14523319 + B4 SINE B4 154 291 -1 4 1399 375 257 67 58 chr12 106734412 106734532 -14522998 + MLT1A0 LTR MaLR 245 365 0 4 1399 600 259 19 25 chr12 106734657 106734819 -14522711 + RSINE1 SINE B4 3 163 -2 4 1399 662 223 7 21 chr12 106735048 106735190 -14522340 - MT2A LTR ERVL -76 457 318 4 1399 907 160 39 0 chr12 106735190 106735385 -14522145 + URR1A DNA MER1_type 1 226 0 4 1399 776 188 0 0 chr12 106735390 106735528 -14522002 - MT2A LTR ERVL -213 320 183 4 1399 1349 167 0 22 chr12 106737108 106737334 -14520196 - URR1A DNA MER1_type -5 221 1 4 1399 185 314 80 23 chr12 106738619 106738707 -14518823 + MIRc SINE MIR 60 152 -116 4 1399 311 277 35 99 chr12 106738734 106738906 -14518624 + MLT1D LTR MaLR 53 213 -292 4 1399 316 285 130 0 chr12 106738958 106739081 -14518449 + MLT1D LTR MaLR 353 491 -14 4 1399 424 288 52 15 chr12 106739884 106740018 -14517512 + B4 SINE B4 66 204 -88 4 1399 877 154 0 0 chr12 106739913 106740043 -14517487 + B1_Mus1 SINE Alu 10 139 -9 4 1399 268 24 24 24 chr12 106740043 106740085 -14517445 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1399 432 0 0 0 chr12 106740141 106740189 -14517341 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1399 712 241 81 214 chr12 106740845 106741252 -14516278 - MTE2b LTR MaLR -15 364 12 4 1399 777 169 88 0 chr12 106741411 106741547 -14515983 - B1_Mus1 SINE Alu 0 148 1 4 1399 874 163 3 33 chr12 106741558 106741762 -14515768 - B3 SINE B2 -5 190 1 4 1399 273 294 7 67 chr12 106742023 106742158 -14515372 - L1_Rod LINE L1 0 5847 5721 4 1399 188 64 62 21 chr12 106742393 106742441 -14515089 + (TTG)n Simple_repeat Simple_repeat 2 51 0 4 1399 677 251 101 11 chr12 106742823 106743012 -14514518 + B4 SINE B4 7 212 -80 4 1399 754 212 146 6 chr12 106743054 106743225 -14514305 + B3 SINE B2 8 202 -14 4 1399 729 0 0 0 chr12 106743227 106743308 -14514222 + (GA)n Simple_repeat Simple_repeat 1 81 0 4 1399 250 226 65 0 chr12 106743308 106743370 -14514160 + PB1D10 SINE Alu 46 111 -6 4 1399 436 320 104 66 chr12 106743377 106743433 -14514097 + MLT1B LTR MaLR 172 221 -169 4 1399 1137 66 0 0 chr12 106743433 106743570 -14513960 + B1_Mus2 SINE Alu 1 137 -10 4 1399 238 26 0 49 chr12 106743570 106743611 -14513919 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1399 436 320 104 66 chr12 106743611 106743764 -14513766 + MLT1B LTR MaLR 222 389 -1 4 1399 1735 170 13 36 chr12 106743850 106744240 -14513290 + RMER17C LTR ERVK 1 381 -29 4 1399 261 0 0 0 chr12 106744571 106744600 -14512930 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1399 648 195 44 0 chr12 106744932 106745045 -14512485 + B1_Mur1 SINE Alu 32 149 0 4 1399 884 266 31 52 chr12 106745072 106745358 -14512172 + B4A SINE B4 13 292 0 4 1399 360 216 7 33 chr12 106745373 106745526 -14512004 + (CA)n Simple_repeat Simple_repeat 2 150 0 4 1399 783 247 180 19 chr12 106746014 106746336 -14511194 + Lx8 LINE L1 6949 7322 -151 4 1399 3387 286 28 28 chr12 106746858 106747006 -14510524 - RCHARR1 DNA MER1_type -7 967 825 4 1399 514 101 0 83 chr12 106747006 106747114 -14510416 - Lx LINE L1 0 6654 6556 4 1399 3387 286 28 28 chr12 106747114 106747928 -14509602 - RCHARR1 DNA MER1_type -150 824 5 4 1399 485 320 103 54 chr12 106747932 106748010 -14509520 + L1M5 LINE L1 4825 4914 -1232 4 1399 2309 189 66 10 chr12 106748010 106748508 -14509022 - RLTR11A2 LTR ERVK -1 526 1 4 1399 485 320 103 54 chr12 106748508 106748779 -14508751 + L1M5 LINE L1 4915 5191 -955 4 1399 477 295 131 0 chr12 106748780 106748902 -14508628 + RSINE1 SINE B4 6 143 -22 4 1399 378 0 0 0 chr12 106748907 106748949 -14508581 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1399 279 353 33 41 chr12 106749229 106749350 -14508180 - MLT1H LTR MaLR -421 128 9 4 1399 226 272 126 42 chr12 106749264 106749383 -14508147 + Charlie6 DNA MER1_type 240 368 -3132 4 1399 269 275 0 111 chr12 106749383 106749419 -14508111 - MIR SINE MIR -142 120 90 4 1399 2072 149 27 54 chr12 106749419 106749824 -14507706 + ORR1B1 LTR MaLR 1 394 0 4 1399 269 275 0 111 chr12 106749824 106749877 -14507653 - MIR SINE MIR -173 89 41 4 1399 184 298 0 116 chr12 106750314 106750409 -14507121 - L3 LINE CR1 -1133 3356 3273 4 1399 1249 78 18 0 chr12 106751108 106751275 -14506255 + B2_Mm1t SINE B2 2 171 -22 4 1399 418 250 130 89 chr12 106751516 106751762 -14505768 + RMER2 LTR ERV1 308 563 -4 4 1399 516 209 115 57 chr12 106751771 106751846 -14505684 - MTD LTR MaLR 0 419 351 4 1399 369 0 0 0 chr12 106751846 106751887 -14505643 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1399 516 209 115 57 chr12 106751887 106751968 -14505562 - MTD LTR MaLR -69 350 255 4 1399 228 255 68 48 chr12 106752716 106752819 -14504711 + MER46C DNA MER2_type 223 327 -11 4 1399 249 258 81 0 chr12 106753343 106753405 -14504125 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 4 1399 293 305 54 19 chr12 106754383 106754536 -14502994 - MIRm SINE MIR -79 189 24 4 1399 271 254 0 0 chr12 106754675 106754734 -14502796 - MLT1A1 LTR MaLR -9 399 341 4 1399 759 120 0 0 chr12 106754853 106754970 -14502560 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 4 1399 195 42 0 0 chr12 106754971 106754995 -14502535 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 4 1399 341 155 0 17 chr12 106755012 106755071 -14502459 - B2_Mm2 SINE B2 -91 104 47 4 1399 422 118 39 13 chr12 106755118 106755195 -14502335 - B2_Mm1t SINE B2 -15 178 100 4 1399 297 273 0 38 chr12 106755787 106755867 -14501663 - MLT1A1 LTR MaLR -305 103 27 4 1399 249 40 80 0 chr12 106756557 106756607 -14500923 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 4 1399 753 163 14 9 chr12 106756612 106756758 -14500772 + ORR1D2 LTR MaLR 222 373 -1 4 1399 759 281 29 0 chr12 106757020 106757166 -14500364 + B3A SINE B2 1 148 -50 4 1399 343 0 21 21 chr12 106757166 106757214 -14500316 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1399 759 281 29 0 chr12 106757214 106757238 -14500292 + B3A SINE B2 149 175 -23 4 1399 1414 151 65 4 chr12 106757289 106757535 -14499995 - ORR1C2 LTR MaLR -123 261 1 4 1399 492 320 25 30 chr12 106757642 106757877 -14499653 + L1MB5 LINE L1 5928 6161 -13 4 1399 315 0 0 0 chr12 106758837 106758872 -14498658 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1399 614 246 93 157 chr12 106758886 106759166 -14498364 - MTE2a LTR MaLR -116 263 2 4 1399 306 149 15 0 chr12 106759229 106759296 -14498234 + Lx4B LINE L1 6987 7054 -4 4 1399 226 340 25 25 chr12 106760042 106760202 -14497328 - Lx8 LINE L1 -4 7469 7310 4 1399 447 288 112 0 chr12 106760207 106760367 -14497163 - Lx8 LINE L1 -326 7147 6970 4 1399 918 271 71 11 chr12 106760390 106760670 -14496860 + Lx8 LINE L1 6590 6886 -587 4 1399 369 43 0 0 chr12 106760677 106760724 -14496806 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 1399 357 291 7 107 chr12 106760772 106760798 -14496732 + YREP_Mm Unknown Unknown 160 187 -1625 4 1399 1139 222 5 36 chr12 106760798 106760811 -14496719 - ID_B1 SINE B4 0 224 214 4 1399 243 0 0 0 chr12 106760811 106760838 -14496692 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1399 357 291 7 107 chr12 106760838 106760948 -14496582 + YREP_Mm Unknown Unknown 188 294 -1518 4 1399 1139 222 5 36 chr12 106760948 106761044 -14496486 - ID_B1 SINE B4 -11 213 12 4 1399 230 286 157 56 chr12 106761757 106761846 -14495684 + MER54A LTR ERVL 307 404 -497 4 1399 838 279 103 16 chr12 106761881 106762201 -14495329 + MER54A LTR ERVL 501 848 -53 4 1399 312 323 10 10 chr12 106762308 106762405 -14495125 - MLT1F LTR MaLR -434 114 18 4 1399 399 330 56 43 chr12 106762540 106762754 -14494776 + B4A SINE B4 16 227 -65 4 1399 783 0 0 0 chr12 106762951 106763038 -14494492 + (CCCTAA)n Simple_repeat Simple_repeat 1 87 0 4 1399 1147 69 14 0 chr12 106763076 106763221 -14494309 + B1_Mm SINE Alu 1 147 0 4 1399 228 67 0 0 chr12 106763221 106763251 -14494279 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1399 471 269 192 25 chr12 106763396 106763636 -14493894 + MER63C DNA AcHobo 588 867 -63 4 1399 758 184 194 108 chr12 106763753 106764021 -14493509 + B4 SINE B4 1 291 -1 4 1399 243 0 0 0 chr12 106764133 106764160 -14493370 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1399 554 268 87 27 chr12 106765635 106765692 -14491838 - B3A SINE B2 0 198 145 4 1399 441 0 0 0 chr12 106765692 106765741 -14491789 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1399 554 268 87 27 chr12 106765741 106765867 -14491663 - B3A SINE B2 -54 144 4 4 1399 1762 184 27 47 chr12 106765905 106766373 -14491157 - RMER17C LTR ERVK -519 439 7 4 1399 789 256 202 8 chr12 106766386 106766634 -14490896 - MTD LTR MaLR -123 296 1 4 1399 188 0 0 69 chr12 106767082 106767111 -14490419 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 4 1399 1100 59 0 0 chr12 106767111 106767246 -14490284 - B1_Mus1 SINE Alu -12 136 2 4 1399 502 239 62 43 chr12 106767449 106767611 -14489919 + MTEb LTR MaLR 199 363 -16 4 1399 359 310 9 0 chr12 106768519 106768632 -14488898 - PB1D10 SINE Alu -3 114 1 4 1399 268 287 8 83 chr12 106768656 106768789 -14488741 + L1M5 LINE L1 5391 5513 -651 4 1399 335 267 62 16 chr12 106768991 106769134 -14488396 + L1MA4A LINE L1 5776 5931 -372 4 1399 297 261 0 28 chr12 106769407 106769478 -14488052 + RSINE1 SINE B4 11 79 -86 4 1399 189 0 0 0 chr12 106770590 106770611 -14486919 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1399 620 283 7 27 chr12 106770617 106770766 -14486764 - RSINE1 SINE B4 -17 148 3 4 1399 719 241 182 8 chr12 106771253 106771500 -14486030 + B4A SINE B4 1 290 -2 4 1399 832 49 178 47 chr12 106771575 106771593 -14485937 - B1_Mus2 SINE Alu 0 147 135 5 1399 536 0 16 0 chr12 106771593 106771657 -14485873 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 5 1399 832 49 178 47 chr12 106771657 106771767 -14485763 - B1_Mus2 SINE Alu -13 134 2 5 1399 862 154 28 61 chr12 106771804 106771984 -14485546 - B2_Mm2 SINE B2 -2 193 20 5 1399 306 0 0 0 chr12 106772212 106772246 -14485284 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5 1399 503 304 10 9 chr12 106772397 106772657 -14484873 - L1MA5A LINE L1 -377 5935 5611 5 1399 697 231 84 0 chr12 106772667 106772810 -14484720 - ORR1C2 LTR MaLR 0 384 230 5 1399 524 254 130 14 chr12 106773184 106773392 -14484138 + RMER20B LTR ERVK 180 411 -216 5 1399 423 0 0 0 chr12 106774112 106774159 -14483371 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1399 231 234 47 0 chr12 106776125 106776189 -14481341 - MIRc SINE MIR -106 162 96 5 1399 1213 272 30 71 chr12 106776400 106776863 -14480667 - RMER5 LTR ERV1 -10 524 81 5 1399 558 210 23 27 chr12 106778298 106778451 -14479079 - ORR1D2 LTR MaLR -1 378 230 5 1399 452 279 113 31 chr12 106778408 106778581 -14478949 + B4A SINE B4 39 218 -74 5 1399 293 0 0 26 chr12 106778581 106778619 -14478911 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 5 1399 452 279 113 31 chr12 106778619 106778674 -14478856 + B4A SINE B4 219 286 -6 5 1399 196 213 16 16 chr12 106778698 106778760 -14478770 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1399 4060 104 39 101 chr12 106778950 106779751 -14477779 + RMER17A LTR ERVK 1 751 0 5 1399 386 265 51 0 chr12 106780772 106780889 -14476641 - B3 SINE B2 -11 205 83 5 1399 414 79 0 0 chr12 106781139 106781202 -14476328 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1399 343 350 25 16 chr12 106781493 106781615 -14475915 + MLT1J2 LTR MaLR 23 145 -303 5 1399 253 310 16 29 chr12 106782466 106782675 -14474855 - L1VL1 LINE L1 -5817 605 479 5 1399 1001 293 80 2 chr12 106783236 106783577 -14473953 + MLT2D LTR ERVL 3 519 -40 5 1399 514 91 45 0 chr12 106783577 106783665 -14473865 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 5 1399 265 119 0 0 chr12 106783675 106783717 -14473813 + MLT2D LTR ERVL 516 557 -6 5 1399 291 54 0 0 chr12 106783717 106783754 -14473776 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1399 216 246 0 0 chr12 106783753 106783822 -14473708 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1399 189 0 0 0 chr12 106784826 106784847 -14472683 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1399 268 254 218 30 chr12 106786260 106786459 -14471071 + MTE2b LTR MaLR 88 350 -29 5 1399 268 229 0 16 chr12 106786476 106786538 -14470992 + B3 SINE B2 1 61 -155 5 1399 273 344 5 72 chr12 106786770 106786936 -14470594 + MIR SINE MIR 65 234 -34 5 1399 301 298 0 79 chr12 106788186 106788518 -14469012 + G-rich Low_complexity Low_complexity 1 305 0 5 1399 312 145 83 59 chr12 106788289 106788458 -14469072 + (CAGGG)n Simple_repeat Simple_repeat 3 175 0 5 1399 358 167 56 62 chr12 106788529 106788708 -14468822 + (CAGGG)n Simple_repeat Simple_repeat 2 179 0 5 1399 294 164 74 62 chr12 106788737 106788913 -14468617 + (CAGGG)n Simple_repeat Simple_repeat 2 179 0 5 1399 227 329 53 0 chr12 106788939 106789015 -14468515 + Lx8 LINE L1 7219 7298 -175 5 1399 842 174 210 0 chr12 106789188 106789355 -14468175 - B3 SINE B2 -14 202 1 5 1399 267 311 134 80 chr12 106789451 106789689 -14467841 + MLT1B LTR MaLR 54 304 -86 5 1399 234 267 0 16 chr12 106790592 106790653 -14466877 + B4 SINE B4 10 69 -223 5 1399 327 49 0 0 chr12 106790654 106790695 -14466835 + (CCCCCA)n Simple_repeat Simple_repeat 1 41 0 5 1399 1491 134 127 3 chr12 106790766 106791050 -14466480 - MTC LTR MaLR 0 421 103 5 1399 343 309 23 61 chr12 106791109 106791240 -14466290 + RSINE1 SINE B4 29 154 -11 5 1399 237 261 103 56 chr12 106791294 106791420 -14466110 + L1MB7 LINE L1 5220 5351 -795 5 1399 477 249 0 0 chr12 106791420 106791647 -14465883 + (CA)n Simple_repeat Simple_repeat 1 227 0 5 1399 1186 62 0 0 chr12 106791914 106792059 -14465471 + B1_Mus2 SINE Alu 1 145 -2 5 1399 279 0 0 0 chr12 106792059 106792090 -14465440 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1399 476 185 0 0 chr12 106793045 106793126 -14464404 - ID_B1 SINE B4 0 224 144 5 1399 227 327 57 19 chr12 106793236 106793342 -14464188 + MIRb SINE MIR 71 180 -88 5 1399 236 335 57 6 chr12 106794381 106794540 -14462990 + L1MB7 LINE L1 5930 6096 -88 5 1399 250 290 124 48 chr12 106796633 106796738 -14460792 + BC1_Mm scRNA scRNA 2 114 -38 5 1399 1994 143 15 73 chr12 106796956 106797355 -14460175 + ORR1B1 LTR MaLR 19 394 0 5 1399 963 284 7 52 chr12 106797438 106797743 -14459787 - B4 SINE B4 -1 291 1 5 1399 229 214 54 0 chr12 106798046 106798102 -14459428 + MTC LTR MaLR 12 70 -351 5 1399 790 318 59 59 chr12 106798066 106798510 -14459020 + MT2A LTR ERVL 45 488 -45 5 1399 650 82 0 10 chr12 106798543 106798642 -14458888 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 5 1399 185 140 0 66 chr12 106799679 106799740 -14457790 + GA-rich Low_complexity Low_complexity 3 59 0 5 1399 238 372 12 84 chr12 106801673 106801840 -14455690 + MIRm SINE MIR 6 160 -116 5 1399 275 264 0 27 chr12 106803243 106803317 -14454213 + L1MC2 LINE L1 6243 6314 -30 5 1399 523 237 6 6 chr12 106804062 106804219 -14453311 + CT-rich Low_complexity Low_complexity 4 160 0 5 1399 887 147 11 11 chr12 106804227 106804406 -14453124 + C-rich Low_complexity Low_complexity 1 179 0 5 1399 248 170 19 0 chr12 106804400 106804453 -14453077 + CT-rich Low_complexity Low_complexity 3 56 0 5 1399 1287 209 190 6 chr12 106804989 106805331 -14452199 + MTD LTR MaLR 1 405 -14 5 1399 356 314 0 29 chr12 106805660 106805765 -14451765 + B1F SINE Alu 16 117 -32 5 1399 492 18 0 0 chr12 106805992 106806049 -14451481 + (TTTTG)n Simple_repeat Simple_repeat 5 61 0 5 1399 443 288 71 13 chr12 106806586 106806741 -14450789 - B4A SINE B4 -22 270 107 5 1399 360 64 0 0 chr12 106806773 106806820 -14450710 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1399 650 278 139 0 chr12 106806821 106807044 -14450486 - B4A SINE B4 -36 256 3 5 1399 303 269 35 61 chr12 106807522 106807572 -14449958 + PB1D10 SINE Alu 1 49 -68 5 1399 180 0 0 0 chr12 106807572 106807592 -14449938 + (TGG)n Simple_repeat Simple_repeat 2 21 0 5 1399 303 269 35 61 chr12 106807592 106807656 -14449874 + PB1D10 SINE Alu 50 112 -5 5 1399 307 309 0 0 chr12 106807659 106807740 -14449790 + ID4_ SINE ID 3 83 0 5 1399 833 148 82 0 chr12 106807865 106808000 -14449530 + B1_Mus2 SINE Alu 2 147 0 5 1399 4068 48 0 2 chr12 106808004 106808486 -14449044 + L1Md_F2 LINE L1 6101 6581 -1 5 1399 270 0 0 0 chr12 106809132 106809162 -14448368 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1399 795 148 0 0 chr12 106809266 106809401 -14448129 + (GAAA)n Simple_repeat Simple_repeat 3 137 0 5 1399 244 226 0 0 chr12 106810831 106810884 -14446646 + B1F1 SINE Alu 4 56 -93 5 1399 253 246 72 88 chr12 106811036 106811161 -14446369 - ORR1E LTR MaLR -215 144 22 5 1399 707 325 18 9 chr12 106811632 106811859 -14445671 - B4A SINE B4 -3 289 61 5 1399 1114 198 5 15 chr12 106813108 106813313 -14444217 + B3 SINE B2 4 206 -10 5 1399 510 251 65 70 chr12 106813341 106813542 -14443988 + B4 SINE B4 81 280 -12 5 1399 219 204 0 0 chr12 106813555 106813604 -14443926 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1399 238 307 49 118 chr12 106813844 106813871 -14443659 - B2_Mm2 SINE B2 -3 190 16 5 1399 683 252 7 20 chr12 106813871 106814021 -14443509 - RSINE1 SINE B4 -3 162 15 5 1399 1403 146 38 5 chr12 106814023 106814236 -14443294 + URR1B DNA MER1_type 5 224 -1 5 1399 225 307 49 118 chr12 106814236 106814259 -14443271 - B2_Mm1a SINE B2 -172 21 2 5 1399 661 297 24 24 chr12 106814287 106814494 -14443036 - MER21B LTR ERV1 -160 703 497 5 1399 1393 87 0 49 chr12 106814834 106815039 -14442491 + B2_Mm2 SINE B2 1 195 0 5 1399 794 245 23 21 chr12 106815055 106815289 -14442241 - MT2B LTR ERVL 0 601 242 5 1399 274 243 0 108 chr12 106815705 106815788 -14441742 - MT2B LTR ERVL -297 236 163 5 1399 659 148 0 7 chr12 106815788 106815924 -14441606 + (CA)n Simple_repeat Simple_repeat 2 136 0 5 1399 445 179 58 191 chr12 106815927 106816100 -14441430 - MT2B LTR ERVL -383 150 1 5 1399 237 356 0 0 chr12 106816451 106816552 -14440978 + (TGG)n Simple_repeat Simple_repeat 1 101 0 5 1399 321 253 0 0 chr12 106816583 106816666 -14440864 + G-rich Low_complexity Low_complexity 2 84 0 5 1399 1112 247 114 21 chr12 106816666 106817043 -14440487 + RLTR19-int LTR ERVK 1429 1840 -4297 5 1399 225 65 0 0 chr12 106817055 106817086 -14440444 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 1399 1041 62 14 0 chr12 106817087 106817232 -14440298 - B1_Mm SINE Alu 0 147 1 5 1399 250 203 16 0 chr12 106817251 106817315 -14440215 + RLTR19-int LTR ERVK 1878 1942 -4195 5 1399 183 179 82 31 chr12 106817315 106817413 -14440117 + CT-rich Low_complexity Low_complexity 3 105 0 5 1399 181 188 219 0 chr12 106817728 106817792 -14439738 + MIR SINE MIR 39 116 -146 5 1399 230 51 51 0 chr12 106818054 106818093 -14439437 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 5 1399 504 0 0 0 chr12 106818412 106818468 -14439062 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1399 184 241 68 17 chr12 106818542 106818601 -14438929 - MIRc SINE MIR -120 148 87 5 1399 239 291 0 0 chr12 106819797 106819852 -14437678 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1399 2397 113 3 0 chr12 106819935 106820261 -14437269 - ORR1A2 LTR MaLR 0 327 1 5 1399 1276 34 0 0 chr12 106820307 106820453 -14437077 + B1_Mm SINE Alu 2 147 0 5 1399 238 322 50 106 chr12 106821226 106821424 -14436106 - MLT2C1 LTR ERVL -55 342 156 5 1399 235 328 0 0 chr12 106821486 106821550 -14435980 + RMER30 DNA MER1_type 133 196 -6 5 174 956 263 107 43 chr12 106823419 106823765 -14433765 - MT2A LTR ERVL 0 533 166 5 1400 3474 30 2 2 chr12 106823809 106824205 -14433325 - MTA_Mm LTR MaLR 0 396 1 5 1400 420 314 220 18 chr12 106825603 106825880 -14431650 - ORR1E LTR MaLR -29 350 18 5 1400 948 203 9 17 chr12 106826141 106826347 -14431183 - B3 SINE B2 0 195 2 5 1400 435 37 0 0 chr12 106827066 106827120 -14430410 - L1Md_F2 LINE L1 -568 6014 5961 6 1400 1393 39 0 0 chr12 106827120 106827299 -14430231 - B2_Mm1a SINE B2 -4 189 11 6 1400 5037 41 0 5 chr12 106827299 106827891 -14429639 + L1Md_F2 LINE L1 5989 6577 -5 6 1400 397 294 67 0 chr12 106828133 106828252 -14429278 - MLT1F1 LTR MaLR -384 185 59 6 1400 270 0 0 0 chr12 106828260 106828290 -14429240 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1400 438 179 0 0 chr12 106828573 106828668 -14428862 + (ATGGTG)n Simple_repeat Simple_repeat 1 95 0 6 1400 218 229 16 32 chr12 106829675 106829738 -14427792 + C-rich Low_complexity Low_complexity 5 66 0 6 1400 567 341 53 36 chr12 106832465 106832769 -14424761 - ORR1E LTR MaLR 0 359 51 6 1400 198 0 0 0 chr12 106833629 106833651 -14423879 + (TGG)n Simple_repeat Simple_repeat 3 24 0 6 1400 195 360 3 13 chr12 106834233 106834335 -14423195 + MIRb SINE MIR 5 105 -171 6 1400 358 260 0 38 chr12 106834532 106834716 -14422814 + (ATGGTG)n Simple_repeat Simple_repeat 1 177 0 6 1400 573 212 48 7 chr12 106836409 106836556 -14420974 - L1MB7 LINE L1 -79 6105 5953 6 1400 337 283 52 26 chr12 106837075 106837191 -14420339 + MLT1C LTR MaLR 63 181 -286 6 1400 1788 159 150 3 chr12 106837788 106838148 -14419382 + MTC LTR MaLR 1 413 -8 6 1400 285 257 96 52 chr12 106838945 106839060 -14418470 - L2a LINE L2 -302 3124 3005 6 1400 242 269 0 0 chr12 106841648 106841700 -14415830 - PB1D7 SINE Alu -67 53 2 6 1400 279 0 0 0 chr12 106841724 106841755 -14415775 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1400 423 0 0 0 chr12 106841755 106841801 -14415729 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1400 704 144 44 36 chr12 106841801 106841938 -14415592 - B1_Mur2 SINE Alu -10 139 2 6 1400 1048 218 11 5 chr12 106841940 106842129 -14415401 - B3 SINE B2 -26 190 1 6 1400 567 349 10 30 chr12 106842151 106842352 -14415178 - MER58A DNA MER1_type -1 223 27 6 1400 749 266 162 71 chr12 106843597 106843993 -14413537 + MLT1D LTR MaLR 74 505 0 6 1400 270 310 21 85 chr12 106844955 106845096 -14412434 - ORR1E LTR MaLR -4 355 224 6 1400 387 0 0 0 chr12 106845467 106845510 -14412020 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 6 1400 2449 93 3 6 chr12 106845689 106846013 -14411517 + ORR1A2 LTR MaLR 5 327 0 6 1400 1203 104 11 21 chr12 106846887 106847048 -14410482 + B2_Mm2 SINE B2 4 161 -34 6 1400 192 77 0 0 chr12 106847048 106847074 -14410456 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1400 1203 104 11 21 chr12 106847074 106847099 -14410431 + B2_Mm2 SINE B2 162 188 -7 6 1400 904 243 37 0 chr12 106847085 106847299 -14410231 - B4A SINE B4 -69 223 2 6 1400 1265 34 7 0 chr12 106848577 106848723 -14408807 + B1_Mus1 SINE Alu 1 147 -1 6 1400 249 125 17 35 chr12 106848724 106848782 -14408748 + A-rich Low_complexity Low_complexity 4 60 0 6 1400 377 219 27 62 chr12 106848869 106848908 -14408622 + MT2B LTR ERVL 125 159 -442 6 1400 399 209 55 37 chr12 106848908 106849035 -14408495 + B1_Mur4 SINE Alu 2 124 -25 6 1400 686 271 12 12 chr12 106849047 106849208 -14408322 + RSINE1 SINE B4 3 163 -2 6 1400 299 163 0 20 chr12 106849885 106849935 -14407595 - RSINE1 SINE B4 -102 63 15 6 1400 1028 217 10 5 chr12 106850295 106850499 -14407031 + B3 SINE B2 2 206 -10 6 1400 254 243 49 86 chr12 106850640 106850721 -14406809 + B4A SINE B4 139 216 -76 6 1400 1105 248 41 16 chr12 106850855 106851174 -14406356 + Lx8 LINE L1 6900 7226 -247 6 1400 21 0 0 0 chr12 106852507 106852528 -14405002 + AT_rich Low_complexity Low_complexity 1 21 0 6 1400 186 103 0 0 chr12 106852862 106852891 -14404639 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1400 204 271 34 0 chr12 106853253 106853312 -14404218 - MIR SINE MIR -57 151 91 6 1400 238 67 0 43 chr12 106853921 106853968 -14403562 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 1400 201 129 0 0 chr12 106853982 106854013 -14403517 + (CTGGGG)n Simple_repeat Simple_repeat 4 34 0 6 1400 243 140 0 0 chr12 106854727 106854777 -14402753 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1400 1021 254 42 82 chr12 106856342 106856672 -14400858 + MTE2a LTR MaLR 27 343 -36 6 1400 288 300 57 48 chr12 106856671 106856776 -14400754 + B4A SINE B4 36 141 -151 6 1400 2314 8 0 0 chr12 106857335 106857600 -14399930 + L1Md_A LINE L1 5322 5586 -297 6 1400 8949 16 0 0 chr12 106857600 106858596 -14398934 + L1Md_A LINE L1 5587 6582 0 6 1400 1580 169 116 52 chr12 106858992 106859373 -14398157 + MTD LTR MaLR 2 406 -13 6 1400 297 0 0 0 chr12 106859685 106859718 -14397812 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1400 320 184 220 20 chr12 106860070 106860170 -14397360 + PB1D7 SINE Alu 1 120 0 6 1400 301 327 23 80 chr12 106860557 106860733 -14396797 - Charlie5 DNA MER1_type -4 2620 2455 6 1400 327 177 0 0 chr12 106860734 106860796 -14396734 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1400 310 317 82 16 chr12 106861928 106862050 -14395480 + RSINE1 SINE B4 21 150 -15 6 1400 220 179 163 23 chr12 106862675 106862761 -14394769 + MIRb SINE MIR 106 203 -65 6 1400 366 232 131 0 chr12 106863406 106863505 -14394025 + PB1 SINE Alu 13 124 -3 6 1400 315 0 0 0 chr12 106865154 106865189 -14392341 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1400 255 262 150 53 chr12 106865267 106865400 -14392130 + B1_Mur2 SINE Alu 2 147 -2 6 1400 503 242 43 75 chr12 106865845 106865866 -14391664 + B4 SINE B4 66 81 -211 6 1400 830 166 14 0 chr12 106865866 106866011 -14391519 + B1_Mus2 SINE Alu 1 147 0 6 1400 493 236 67 34 chr12 106866022 106866171 -14391359 + B4 SINE B4 70 223 -69 6 1400 759 149 73 15 chr12 106866040 106866176 -14391354 + B1_Mur4 SINE Alu 7 150 0 6 1400 3207 33 35 2 chr12 106866267 106866665 -14390865 + IAPLTR2a LTR ERVK 1 411 0 6 1400 999 110 25 103 chr12 106866666 106866869 -14390661 + IAPEz-int LTR ERVK 9 195 -6286 6 1400 230 321 0 0 chr12 106866869 106866922 -14390608 + RLTR27 LTR ERVK 223 275 -34 6 1400 1098 68 7 0 chr12 106866922 106867069 -14390461 + IAPEz-int LTR ERVK 168 315 -6166 6 1400 3445 58 0 19 chr12 106867039 106867500 -14390030 + IAPEz-int LTR ERVK 211 662 -5819 6 1400 2097 75 0 0 chr12 106867500 106867778 -14389752 + IAPEz-int LTR ERVK 1359 1636 -4845 6 1400 5662 53 14 8 chr12 106867777 106868517 -14389013 + IAPEz-int LTR ERVK 5736 6479 -2 6 1400 3256 28 35 2 chr12 106868519 106868917 -14388613 + IAPLTR2a LTR ERVK 1 411 0 6 1400 324 218 41 2 chr12 106870090 106870208 -14387322 + L1M5 LINE L1 5306 5433 -2352 6 1400 214 269 0 15 chr12 106870219 106870287 -14387243 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 6 1400 237 228 51 0 chr12 106870290 106870369 -14387161 + L1M5 LINE L1 5647 5729 -455 6 1400 1069 197 0 57 chr12 106871993 106872203 -14385327 + B3A SINE B2 1 198 0 6 1400 216 67 0 0 chr12 106872237 106872267 -14385263 + (CAAAAA)n Simple_repeat Simple_repeat 5 34 0 6 1400 216 315 0 0 chr12 106872635 106872689 -14384841 - MIRb SINE MIR -36 232 179 6 1400 257 162 4 0 chr12 106873328 106873388 -14384142 + B1F SINE Alu 43 134 -15 6 1400 416 241 68 8 chr12 106874159 106874276 -14383254 - B3 SINE B2 -9 207 84 6 1400 930 214 28 28 chr12 106875326 106875542 -14381988 + B3 SINE B2 1 216 0 6 1400 1293 145 39 0 chr12 106875832 106876039 -14381491 + B3 SINE B2 2 216 0 6 1400 416 266 18 18 chr12 106876452 106876563 -14380967 - PB1D9 SINE Alu -5 115 5 6 1400 21 0 0 0 chr12 106876631 106876652 -14380878 + AT_rich Low_complexity Low_complexity 1 21 0 6 1400 1456 54 38 5 chr12 106876729 106876914 -14380616 - B2_Mm2 SINE B2 -3 192 2 6 1400 357 325 24 40 chr12 106878586 106878711 -14378819 - ID_B1 SINE B4 -24 200 78 6 1400 645 248 7 34 chr12 106878756 106878902 -14378628 + B1_Mm SINE Alu 3 144 -3 6 1400 260 241 38 0 chr12 106879551 106879630 -14377900 + PB1 SINE Alu 45 126 -1 6 1400 1602 171 153 13 chr12 106879614 106879790 -14377740 + ORR1B1 LTR MaLR 1 186 -208 6 1400 819 177 220 11 chr12 106879790 106879967 -14377563 + B3 SINE B2 3 216 0 6 1400 1602 152 172 9 chr12 106879967 106880154 -14377376 + ORR1B1 LTR MaLR 187 392 -2 6 1400 743 176 222 6 chr12 106881663 106881834 -14375696 + B3 SINE B2 2 209 -7 6 1400 279 327 36 9 chr12 106883257 106883368 -14374162 - PB1D7 SINE Alu -5 115 2 6 1400 552 258 50 0 chr12 106883409 106883529 -14374001 - RSINE1 SINE B4 -2 163 38 6 1400 412 266 10 31 chr12 106884052 106884149 -14373381 + 5S rRNA rRNA 1 95 -26 6 1400 218 128 0 41 chr12 106884436 106884485 -14373045 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 6 1400 1643 220 100 57 chr12 106885554 106886045 -14371485 + RLTR18B LTR ERVK 1 512 0 6 1400 484 299 0 0 chr12 106886259 106886376 -14371154 + PB1D10 SINE Alu 1 117 0 6 1400 218 347 0 96 chr12 106886730 106886813 -14370717 - ID4_ SINE ID -5 78 4 6 1400 575 184 193 0 chr12 106888138 106888252 -14369278 + B1_Mur1 SINE Alu 1 136 -13 6 1400 243 79 0 0 chr12 106888258 106888296 -14369234 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 1400 183 250 0 0 chr12 106888523 106888591 -14368939 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1400 1216 62 0 0 chr12 106889060 106889205 -14368325 + B1_Mm SINE Alu 1 145 -2 6 1400 306 275 0 12 chr12 106889975 106890056 -14367474 - PB1D10 SINE Alu -3 114 35 6 1400 224 301 43 11 chr12 106890076 106890170 -14367360 + PB1D10 SINE Alu 1 97 -20 6 1400 346 252 146 55 chr12 106891151 106891227 -14366303 - B4A SINE B4 -113 179 1 6 1400 419 138 57 91 chr12 106891227 106891315 -14366215 - B3A SINE B2 -113 85 1 6 1400 246 337 35 0 chr12 106891347 106891433 -14366097 + BC1_Mm scRNA scRNA 5 93 -59 6 1400 1959 159 14 50 chr12 106892769 106893132 -14364398 + RLTR15 LTR ERVK 10 359 0 6 1400 235 187 0 169 chr12 106894306 106894322 -14363208 + MT2B LTR ERVL 155 157 -444 6 1400 350 277 161 0 chr12 106894322 106894434 -14363096 + B1_Mur1 SINE Alu 1 130 -20 6 1400 534 231 17 8 chr12 106894451 106894569 -14362961 + PB1D9 SINE Alu 2 120 0 6 1400 29 70 0 0 chr12 106894579 106894636 -14362894 + AT_rich Low_complexity Low_complexity 1 57 0 7 1400 2988 133 22 22 chr12 106894701 106895194 -14362336 + RLTR25A LTR ERVK 1 493 -610 7 1400 571 193 12 116 chr12 106895195 106895359 -14362171 + RLTR25A LTR ERVK 652 798 -230 7 1400 1187 41 0 26 chr12 106895462 106895613 -14361917 + B1_Mus1 SINE Alu 2 148 0 7 1400 901 214 123 36 chr12 106895883 106896135 -14361395 + RLTR25A LTR ERVK 755 1028 0 7 1400 684 197 34 34 chr12 106897513 106897660 -14359870 + B1_Mur1 SINE Alu 3 149 0 7 1400 1255 102 26 21 chr12 106897982 106898173 -14359357 + B2_Mm1a SINE B2 2 193 0 7 1400 479 314 51 32 chr12 106898283 106898500 -14359030 + ID_B1 SINE B4 2 222 -2 7 1400 494 224 29 39 chr12 106898572 106898674 -14358856 + B3 SINE B2 1 101 -115 7 1400 294 302 8 25 chr12 106899966 106900088 -14357442 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 7 1400 263 258 7 29 chr12 106900101 106900237 -14357293 + (CATA)n Simple_repeat Simple_repeat 4 136 0 7 1400 27 0 0 0 chr12 106900316 106900343 -14357187 + AT_rich Low_complexity Low_complexity 1 27 0 7 1400 436 148 250 9 chr12 106900349 106900465 -14357065 + ID_B1 SINE B4 80 223 -1 7 1400 189 154 14 58 chr12 106900665 106900734 -14356796 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 7 1400 384 378 62 37 chr12 106904048 106904400 -14353130 - Tigger8 DNA MER2_type -223 443 83 7 1400 511 171 146 58 chr12 106905084 106905221 -14352309 + B1_Mur3 SINE Alu 1 149 0 7 1400 398 294 97 7 chr12 106905362 106905506 -14352024 + RSINE1 SINE B4 1 157 -8 7 1400 299 313 125 62 chr12 106905559 106905597 -14351933 + ID_B1 SINE B4 69 175 -117 7 1400 387 217 39 98 chr12 106905597 106905699 -14351831 + PB1D7 SINE Alu 19 114 -6 7 1400 299 313 125 62 chr12 106905699 106905719 -14351811 + ID_B1 SINE B4 176 238 -54 7 1400 234 0 0 0 chr12 106905744 106905770 -14351760 + (GA)n Simple_repeat Simple_repeat 2 27 0 7 1400 679 297 65 46 chr12 106905999 106906324 -14351206 - MTE2b LTR MaLR -41 338 8 7 1400 251 277 233 35 chr12 106906496 106906508 -14351022 - B4A SINE B4 -60 232 94 7 1400 425 252 39 10 chr12 106906508 106906612 -14350918 - PB1D7 SINE Alu -5 115 9 7 1400 2371 203 58 18 chr12 106906618 106907120 -14350410 + RLTR11A LTR ERVK 7 528 0 7 1400 379 178 82 123 chr12 106907257 106907379 -14350151 - B1F SINE Alu -2 147 31 7 1400 259 314 232 33 chr12 106907379 106907438 -14350092 - ID_B1 SINE B4 -2 222 6 7 1400 305 241 56 33 chr12 106907747 106907837 -14349693 + PB1D10 SINE Alu 21 112 -5 7 1400 1398 101 0 0 chr12 106907844 106908033 -14349497 + B2_Mm1t SINE B2 1 189 -4 7 1400 300 145 55 20 chr12 106908050 106908117 -14349413 + PB1D9 SINE Alu 4 67 -53 7 1400 765 249 5 38 chr12 106908169 106908353 -14349177 - B3A SINE B2 -16 182 5 7 1400 839 180 214 0 chr12 106909423 106909601 -14347929 - B3 SINE B2 0 216 1 7 1400 615 179 90 0 chr12 106911070 106911204 -14346326 + B1_Mur2 SINE Alu 1 146 -3 7 1400 1447 80 0 5 chr12 106911281 106911470 -14346060 - B2_Mm2 SINE B2 -7 188 1 7 1400 313 330 0 46 chr12 106911471 106911579 -14345951 - PB1D10 SINE Alu -13 104 2 7 1400 807 261 137 0 chr12 106911611 106911845 -14345685 + B4 SINE B4 5 270 -22 7 1400 209 33 33 0 chr12 106911856 106911886 -14345644 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1400 663 209 36 7 chr12 106911904 106912044 -14345486 + B1F1 SINE Alu 3 146 -3 7 1400 649 209 108 43 chr12 106912346 106912531 -14344999 + B3A SINE B2 1 197 -1 7 1400 1067 106 0 0 chr12 106912644 106912786 -14344744 + B1_Mus1 SINE Alu 1 142 -6 7 1400 664 127 0 19 chr12 106913349 106913453 -14344077 + B3 SINE B2 2 103 -113 7 1400 299 326 79 14 chr12 106913453 106913489 -14344041 + RSINE1 SINE B4 3 151 -14 7 1400 909 169 67 0 chr12 106913534 106913712 -14343818 + MT2A LTR ERVL 342 531 -2 7 1400 908 171 7 0 chr12 106913785 106913931 -14343599 - B1_Mur3 SINE Alu -1 148 2 7 1400 30 69 0 0 chr12 106913937 106913995 -14343535 + AT_rich Low_complexity Low_complexity 1 58 0 7 1400 213 39 0 0 chr12 106914066 106914092 -14343438 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1400 556 292 91 41 chr12 106914101 106914344 -14343186 - B4A SINE B4 -27 265 11 7 1400 266 381 0 0 chr12 106914704 106914788 -14342742 + RSINE1 SINE B4 81 164 -1 7 1400 234 0 0 0 chr12 106914850 106914876 -14342654 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 7 1400 2711 271 161 46 chr12 106914886 106915043 -14342487 - MMAR1 DNA Mariner -13 1273 1128 7 1400 407 254 100 27 chr12 106915043 106915193 -14342337 + RSINE1 SINE B4 3 163 -2 7 1400 2711 271 161 46 chr12 106915193 106916064 -14341466 - MMAR1 DNA Mariner -159 1127 126 7 1400 638 192 108 0 chr12 106916068 106916198 -14341332 + B1_Mur1 SINE Alu 1 144 -5 7 1400 273 326 108 27 chr12 106916244 106916392 -14341138 + MMAR1 DNA Mariner 229 388 -898 7 1400 1552 140 82 41 chr12 106916568 106916859 -14340671 + ORR1B1 LTR MaLR 92 394 0 7 1400 1638 31 5 0 chr12 106917466 106917657 -14339873 - B2_Mm1t SINE B2 -1 192 1 7 1400 593 237 8 0 chr12 106918218 106918336 -14339194 + RSINE1 SINE B4 27 145 -20 7 1400 225 214 0 0 chr12 106918340 106918382 -14339148 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 7 1400 208 328 0 0 chr12 106918530 106918594 -14338936 - L3 LINE CR1 -124 4365 4302 7 1400 478 304 123 23 chr12 106918985 106919204 -14338326 + Charlie7 DNA MER1_type 1641 1881 -731 7 1400 257 189 94 0 chr12 106919236 106919289 -14338241 + PB1D10 SINE Alu 53 110 -7 7 1400 677 278 12 47 chr12 106919547 106919717 -14337813 + B3A SINE B2 2 165 -33 7 1400 3279 126 54 2 chr12 106919722 106920253 -14337277 + RMER4B LTR ERVK 5 527 -58 7 1400 261 270 0 0 chr12 106920354 106920417 -14337113 + Charlie7 DNA MER1_type 2204 2266 -346 7 1400 3000 76 2 10 chr12 106920687 106921084 -14336446 + MTB LTR MaLR 1 394 -6 7 1400 990 54 0 15 chr12 106921182 106921314 -14336216 + B1_Mus1 SINE Alu 18 147 -1 7 1400 467 274 26 0 chr12 106921674 106921787 -14335743 + B1F1 SINE Alu 34 149 0 7 1400 346 285 133 61 chr12 106924422 106924610 -14332920 - ID_B1 SINE B4 -69 223 26 7 1400 261 268 84 141 chr12 106924893 106925084 -14332446 + MT2B LTR ERVL 61 240 -361 7 1400 454 220 11 24 chr12 106925011 106925137 -14332393 + PB1D9 SINE Alu 14 148 -2 7 1400 555 277 15 0 chr12 106925730 106925867 -14331663 + ID_B1 SINE B4 86 224 0 7 1400 632 252 33 13 chr12 106925874 106926013 -14331517 + RSINE1 SINE B4 6 147 -18 7 1400 261 0 0 0 chr12 106926013 106926042 -14331488 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1400 632 252 33 13 chr12 106926042 106926055 -14331475 + RSINE1 SINE B4 148 160 -5 7 1400 304 262 39 40 chr12 106926202 106926306 -14331224 + PB1D10 SINE Alu 18 127 0 7 1400 1221 82 17 17 chr12 106926318 106926492 -14331038 + B2_Mm1t SINE B2 1 174 -19 7 1400 551 259 58 17 chr12 106926502 106926675 -14330855 + B3A SINE B2 1 180 -18 7 1400 21 0 0 0 chr12 106926688 106926709 -14330821 + AT_rich Low_complexity Low_complexity 1 21 0 7 1400 281 220 106 26 chr12 106926733 106926833 -14330697 + B1_Mur1 SINE Alu 16 147 -2 7 1400 862 184 69 78 chr12 106926847 106927065 -14330465 + B3 SINE B2 1 216 0 7 1400 255 79 0 0 chr12 106927065 106927103 -14330427 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1400 1285 20 0 0 chr12 106927109 106927256 -14330274 - B1_Mm SINE Alu 0 147 1 7 1400 378 0 0 0 chr12 106927286 106927328 -14330202 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1400 215 248 213 47 chr12 106927391 106927518 -14330012 - B1F2 SINE Alu 0 149 2 7 1400 301 197 18 54 chr12 106928193 106928293 -14329237 - B3 SINE B2 -12 204 39 7 1400 360 0 0 0 chr12 106928458 106928498 -14329032 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1400 732 71 0 10 chr12 106928549 106928648 -14328882 + B1_Mus2 SINE Alu 2 99 -48 7 1400 991 239 29 0 chr12 106928697 106928902 -14328628 + B3 SINE B2 1 211 -5 7 1400 1433 206 142 77 chr12 106928920 106929568 -14327962 + RMER6C LTR ERVK 1 690 0 7 1400 294 50 0 0 chr12 106930056 106930096 -14327434 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1400 577 258 5 78 chr12 106930472 106930665 -14326865 + ID_B1 SINE B4 46 224 0 7 1400 1093 54 0 0 chr12 106930838 106930967 -14326563 + B1_Mus1 SINE Alu 2 130 -18 7 1400 189 74 0 0 chr12 106930972 106930999 -14326531 + (G)n Simple_repeat Simple_repeat 1 27 0 7 1400 240 274 167 0 chr12 106931042 106931126 -14326404 + ID_B1 SINE B4 96 193 -31 7 1400 325 331 56 40 chr12 106931785 106931911 -14325619 + B1F1 SINE Alu 1 128 -21 7 1400 237 200 0 0 chr12 106931969 106932009 -14325521 + B3A SINE B2 2 41 -157 7 1400 1187 75 0 0 chr12 106932009 106932156 -14325374 + B1_Mus1 SINE Alu 2 148 0 7 1400 521 156 26 0 chr12 106932176 106932253 -14325277 + B3A SINE B2 27 105 -93 7 1400 640 229 97 0 chr12 106932259 106932483 -14325047 - MERVL_2A-int LTR ERVL -1191 4570 4278 7 1400 510 243 97 153 chr12 106932493 106932698 -14324832 + MLT1D LTR MaLR 270 466 -39 7 1400 4372 94 120 135 chr12 106932698 106933599 -14323931 + RMER17D LTR ERVK 1 887 -2 7 1400 510 243 97 153 chr12 106933599 106933641 -14323889 + MLT1D LTR MaLR 467 503 -2 7 1400 1353 79 11 0 chr12 106933715 106933892 -14323638 + B2_Mm1t SINE B2 1 179 -14 7 1400 404 134 18 18 chr12 106933955 106934067 -14323463 + B2_Mm2 SINE B2 48 194 -1 7 1400 1513 283 46 32 chr12 106934231 106934728 -14322802 + RMER19C LTR ERVK 104 607 -4 7 1400 1021 60 0 50 chr12 106934731 106934872 -14322658 + B1_Mus2 SINE Alu 5 138 -9 7 1400 200 59 29 0 chr12 106934872 106934906 -14322624 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1400 444 270 21 143 chr12 106935243 106935278 -14322252 + B3 SINE B2 2 36 -180 7 1400 1462 59 43 0 chr12 106935278 106935464 -14322066 + B2_Mm2 SINE B2 2 195 0 8 1400 444 270 21 143 chr12 106935464 106935666 -14321864 + B3 SINE B2 37 210 -6 7 1400 1079 188 43 17 chr12 106936646 106936879 -14320651 + ORR1B1-int LTR MaLR 47 285 -1224 8 1400 464 48 0 16 chr12 106937643 106937707 -14319823 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1400 602 141 20 10 chr12 106937740 106937840 -14319690 + PB1D9 SINE Alu 2 102 -18 8 1400 1202 62 0 0 chr12 106937875 106938021 -14319509 + B1_Mus2 SINE Alu 2 147 0 8 1400 447 239 107 35 chr12 106938175 106938344 -14319186 + B3A SINE B2 2 182 -16 8 1400 21 0 0 0 chr12 106938344 106938365 -14319165 + AT_rich Low_complexity Low_complexity 1 21 0 8 1400 800 174 53 0 chr12 106938384 106938516 -14319014 + B1_Mus2 SINE Alu 1 139 -8 8 1400 279 0 0 0 chr12 106938521 106938552 -14318978 + (CTA)n Simple_repeat Simple_repeat 1 31 0 8 1400 261 0 0 0 chr12 106938552 106938581 -14318949 + (TAA)n Simple_repeat Simple_repeat 3 31 0 8 1400 187 326 43 21 chr12 106938971 106939065 -14318465 + L3 LINE CR1 1663 1758 -2731 8 1400 198 103 0 0 chr12 106939844 106939873 -14317657 + (TA)n Simple_repeat Simple_repeat 2 30 0 8 1400 324 0 0 0 chr12 106941412 106941448 -14316082 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1400 198 0 0 0 chr12 106941922 106941944 -14315586 + (G)n Simple_repeat Simple_repeat 1 22 0 8 1400 867 146 7 0 chr12 106941988 106942125 -14315405 - B1_Mus2 SINE Alu 0 147 10 8 1400 233 234 63 25 chr12 106942324 106942403 -14315127 + ID4 SINE ID 2 83 0 8 1400 809 194 122 0 chr12 106942944 106943124 -14314406 + B3 SINE B2 13 214 -2 8 1400 364 244 165 0 chr12 106943320 106943435 -14314095 - RSINE1 SINE B4 -15 150 17 8 1400 236 312 22 111 chr12 106943386 106943566 -14313964 + MamRep4096 DNA hAT? 250 413 -13 8 1400 965 225 157 24 chr12 106943628 106943883 -14313647 + MTD LTR MaLR 43 331 -88 8 1400 290 310 11 22 chr12 106944873 106944962 -14312568 + B4A SINE B4 4 91 -201 8 1400 426 20 0 0 chr12 106944988 106945039 -14312491 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1400 547 250 80 101 chr12 106945108 106945226 -14312304 + B3 SINE B2 46 164 -52 8 1400 270 125 0 0 chr12 106945226 106945274 -14312256 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1400 315 250 80 101 chr12 106945274 106945293 -14312237 + B2_Mm2 SINE B2 159 180 -15 8 1400 274 176 39 19 chr12 106945401 106945453 -14312077 - MIR SINE MIR -122 86 34 8 1400 422 248 211 50 chr12 106945764 106945904 -14311626 - L1M4 LINE L1 -2841 3305 3138 8 1400 1036 84 28 7 chr12 106945904 106946048 -14311482 - B1_Mm SINE Alu 0 147 1 8 1400 422 263 175 63 chr12 106946048 106946196 -14311334 - L1M4 LINE L1 -2969 3177 3026 8 1400 1199 88 6 0 chr12 106946400 106946559 -14310971 + B2_Mm2 SINE B2 2 161 -34 8 1400 266 0 29 0 chr12 106946560 106946594 -14310936 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1400 242 140 0 23 chr12 106946599 106946643 -14310887 + PB1D7 SINE Alu 73 115 -5 8 1400 337 233 0 40 chr12 106946679 106946755 -14310775 + ID4 SINE ID 9 81 -2 8 1400 236 306 0 0 chr12 106946840 106946902 -14310628 + ID4 SINE ID 21 82 -1 8 1400 947 112 125 0 chr12 106946962 106947114 -14310416 + B2_Mm1t SINE B2 11 181 -12 8 1400 405 208 145 8 chr12 106947197 106947232 -14310298 + B2_Mm2 SINE B2 47 81 -114 8 1400 1122 83 14 0 chr12 106947232 106947377 -14310153 + B1_Mus1 SINE Alu 2 148 0 8 1400 405 208 145 8 chr12 106947377 106947472 -14310058 + B2_Mm2 SINE B2 82 194 -1 8 1400 663 266 40 23 chr12 106947527 106947700 -14309830 + ID_B1 SINE B4 47 222 -2 8 1400 591 126 0 0 chr12 106947703 106947798 -14309732 + (GA)n Simple_repeat Simple_repeat 2 96 0 8 1400 991 68 75 0 chr12 106947865 106947998 -14309532 - B1_Mur4 SINE Alu -6 144 2 8 1400 183 42 0 0 chr12 106948399 106948423 -14309107 + (GGA)n Simple_repeat Simple_repeat 2 25 0 8 1400 866 154 220 11 chr12 106948703 106948880 -14308650 - B3 SINE B2 0 216 3 8 1400 354 156 0 0 chr12 106948885 106948949 -14308581 + CT-rich Low_complexity Low_complexity 2 65 0 8 1400 474 312 20 88 chr12 106949068 106949272 -14308258 - B4A SINE B4 -101 191 2 8 1400 2732 124 26 21 chr12 106949697 106950116 -14307414 + MTC LTR MaLR 1 421 0 8 1400 246 250 56 42 chr12 106950170 106950241 -14307289 + PB1D7 SINE Alu 1 72 -48 8 1400 327 296 38 60 chr12 106950287 106950384 -14307146 - MLT1C LTR MaLR -333 134 33 8 1400 2029 155 55 30 chr12 106950384 106950749 -14306781 + ORR1D1 LTR MaLR 1 374 0 8 1400 327 296 38 60 chr12 106950749 106950784 -14306746 - MLT1C LTR MaLR -435 32 6 8 1400 1170 52 0 0 chr12 106950880 106951014 -14306516 + B1_Mm SINE Alu 3 136 -11 8 1400 266 0 0 29 chr12 106951014 106951049 -14306481 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1400 1384 80 37 0 chr12 106951059 106951228 -14306302 + B2_Mm2 SINE B2 1 176 -19 8 1400 216 0 0 0 chr12 106951228 106951252 -14306278 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 8 1400 1384 80 37 0 chr12 106951252 106951269 -14306261 + B2_Mm2 SINE B2 177 193 -2 8 1400 491 202 54 18 chr12 106951370 106951481 -14306049 - B4 SINE B4 -14 278 164 8 1400 584 232 70 92 chr12 106952114 106952153 -14305377 - B3A SINE B2 -14 184 152 8 1400 555 16 0 0 chr12 106952153 106952217 -14305313 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1400 584 232 70 92 chr12 106952217 106952362 -14305168 - B3A SINE B2 -47 151 4 8 1400 216 0 0 0 chr12 106952450 106952474 -14305056 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1400 204 191 48 0 chr12 106952477 106952519 -14305011 + GA-rich Low_complexity Low_complexity 4 47 0 8 1400 428 305 109 0 chr12 106952562 106952690 -14304840 + ID_B1 SINE B4 57 198 -26 8 1400 1350 102 5 5 chr12 106953089 106953277 -14304253 + B2_Mm1t SINE B2 2 189 -4 8 1400 391 221 94 119 chr12 106953817 106953976 -14303554 + B3A SINE B2 41 195 -3 8 1400 746 67 0 49 chr12 106953997 106954139 -14303391 + (GAGAA)n Simple_repeat Simple_repeat 2 136 0 8 1400 1139 90 0 6 chr12 106954384 106954540 -14302990 - RLTR19C LTR ERVK 0 506 352 8 1400 1154 42 0 7 chr12 106954568 106954711 -14302819 - B1_Mus1 SINE Alu 0 148 7 8 21 1721 135 118 21 chr12 106954710 106955042 -14302488 - RLTR19C LTR ERVK -141 365 2 8 1401 444 311 17 0 chr12 106955116 106955235 -14302295 - ID_B1 SINE B4 -2 222 102 8 1401 232 244 86 115 chr12 106955123 106955262 -14302268 + YREP_Mm Unknown Unknown 186 320 -1492 8 1401 3075 44 14 71 chr12 106955275 106955401 -14302129 + MTA_Mm LTR MaLR 1 98 -298 8 1401 1287 34 0 0 chr12 106955401 106955548 -14301982 - B1_Mus2 SINE Alu 0 147 1 8 1401 3075 44 14 71 chr12 106955548 106955841 -14301689 + MTA_Mm LTR MaLR 99 396 0 8 1401 397 233 102 55 chr12 106955841 106955968 -14301562 - B2_Mm2 SINE B2 -16 179 47 8 1401 1326 85 11 0 chr12 106956057 106956234 -14301296 - B2_Mm1t SINE B2 -14 179 1 8 1401 455 222 12 0 chr12 106956241 106956322 -14301208 - ID SINE ID -139 85 4 8 1401 823 145 21 14 chr12 106956493 106956633 -14300897 - B1_Mur1 SINE Alu -1 148 8 8 1401 314 246 153 39 chr12 106956677 106956886 -14300644 - MTEa LTR MaLR -116 263 6 8 1401 252 280 83 53 chr12 106957766 106957898 -14299632 - B4A SINE B4 -156 136 1 8 1401 362 264 37 28 chr12 106958084 106958193 -14299337 + PB1 SINE Alu 2 111 -16 8 1401 674 67 227 70 chr12 106958281 106958409 -14299121 + B1_Mus1 SINE Alu 1 148 0 8 1401 328 36 71 0 chr12 106958800 106958856 -14298674 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 8 1401 304 292 126 35 chr12 106959374 106959548 -14297982 + MER53 DNA hAT 4 193 0 8 1401 327 49 0 0 chr12 106959720 106959761 -14297769 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 8 1401 1182 75 7 0 chr12 106960505 106960652 -14296878 + B1_Mus1 SINE Alu 1 148 0 8 1401 1550 190 148 19 chr12 106960681 106961046 -14296484 + MTC LTR MaLR 1 412 -9 8 1401 469 299 83 15 chr12 106961225 106961429 -14296101 + B4 SINE B4 60 277 -15 8 1401 426 274 9 19 chr12 106961589 106961697 -14295833 - ID_B1 SINE B4 -10 214 108 8 1401 387 0 0 0 chr12 106961838 106961881 -14295649 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 8 1401 1218 69 13 0 chr12 106961881 106962040 -14295490 - B2_Mm2 SINE B2 -33 162 2 8 1401 354 23 0 0 chr12 106962183 106962226 -14295304 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1401 803 152 6 0 chr12 106962312 106962449 -14295081 - B1_Mus1 SINE Alu 0 148 4 8 1401 248 254 85 0 chr12 106962352 106962470 -14295060 - ORR1B1-int LTR MaLR -755 754 627 8 1401 475 217 28 0 chr12 106962551 106962657 -14294873 - PB1D9 SINE Alu -10 110 2 8 1401 279 243 121 57 chr12 106962744 106962901 -14294629 - RMER2 LTR ERV1 -27 540 374 8 1401 255 232 18 0 chr12 106963287 106963343 -14294187 + ID_B1 SINE B4 76 132 -92 8 1401 1186 78 6 40 chr12 106963567 106963741 -14293789 + B2_Mm1t SINE B2 9 176 -17 8 1401 1413 76 5 0 chr12 106963742 106963927 -14293603 + B2_Mm1t SINE B2 1 186 -7 8 1401 456 255 79 90 chr12 106964898 106965075 -14292455 + ID_B1 SINE B4 50 224 0 8 1401 714 176 49 49 chr12 106964933 106965076 -14292454 + B1_Mur2 SINE Alu 6 148 -1 8 1401 185 339 22 86 chr12 106965078 106965217 -14292313 - MIRc SINE MIR -132 136 7 8 1401 237 217 0 0 chr12 106965410 106965456 -14292074 + PB1D10 SINE Alu 66 111 -6 8 1401 388 277 33 25 chr12 106965473 106965595 -14291935 + B1F1 SINE Alu 5 127 -22 8 1401 420 238 164 82 chr12 106965628 106965811 -14291719 + B3A SINE B2 1 198 0 8 1401 1117 97 0 7 chr12 106965819 106965965 -14291565 + B1_Mus1 SINE Alu 3 147 -1 8 1401 294 155 39 78 chr12 106965991 106966068 -14291462 + ID4_ SINE ID 1 74 -9 8 1401 246 95 0 0 chr12 106966351 106966393 -14291137 + (A)n Simple_repeat Simple_repeat 1 42 0 8 1401 419 245 0 36 chr12 106966547 106966657 -14290873 + PB1D10 SINE Alu 5 110 -7 8 1401 691 220 30 15 chr12 106966657 106966791 -14290739 + B1_Mur2 SINE Alu 4 139 -10 8 1401 231 36 0 0 chr12 106966791 106966819 -14290711 + (CAA)n Simple_repeat Simple_repeat 2 29 0 9 1401 345 227 215 54 chr12 106967210 106967396 -14290134 - B3 SINE B2 0 216 1 9 1401 596 254 13 52 chr12 106967414 106967568 -14289962 - B1_Mur2 SINE Alu 0 149 2 9 1401 323 176 13 12 chr12 106967578 106967691 -14289839 - B2_Mm2 SINE B2 0 195 47 9 1401 1335 90 11 0 chr12 106967738 106967915 -14289615 - B2_Mm1t SINE B2 -14 179 1 9 1401 2037 169 68 11 chr12 106968046 106968400 -14289130 - ORR1C1 LTR MaLR -3 375 2 9 1401 357 138 38 0 chr12 106968431 106968511 -14289019 + CT-rich Low_complexity Low_complexity 4 86 0 9 1401 972 161 31 36 chr12 106968554 106968584 -14288946 - B2_Mm2 SINE B2 -2 193 166 9 1401 1060 88 0 58 chr12 106968584 106968740 -14288790 - B1_Mus1 SINE Alu -1 147 1 9 1401 972 161 31 36 chr12 106968740 106968752 -14288778 - B2_Mm2 SINE B2 -30 165 155 9 1401 413 19 19 0 chr12 106968752 106968806 -14288724 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 9 1401 972 161 31 36 chr12 106968806 106968955 -14288575 - B2_Mm2 SINE B2 -41 154 2 9 1401 571 283 189 47 chr12 106969034 106969356 -14288174 + MTD LTR MaLR 2 369 -50 9 1401 480 263 78 28 chr12 106969567 106969708 -14287822 - B1F SINE Alu 0 149 2 9 1401 359 157 0 14 chr12 106969751 106969822 -14287708 + CT-rich Low_complexity Low_complexity 1 70 0 9 1401 252 59 0 0 chr12 106969856 106969890 -14287640 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1401 1585 52 0 5 chr12 106969898 106970092 -14287438 - B2_Mm1a SINE B2 0 193 1 9 1401 1172 128 16 16 chr12 106970094 106970285 -14287245 - B2_Mm1t SINE B2 -2 191 1 9 1401 317 303 27 18 chr12 106970631 106970742 -14286788 - PB1 SINE Alu -15 112 1 9 1401 917 208 117 0 chr12 106970840 106971037 -14286493 + ID_B1 SINE B4 1 220 -4 9 1401 1312 20 0 0 chr12 106971349 106971496 -14286034 + B1_Mus2 SINE Alu 1 147 0 9 1401 225 0 0 0 chr12 106971496 106971521 -14286009 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1401 463 125 35 18 chr12 106972156 106972270 -14285260 + G-rich Low_complexity Low_complexity 3 118 0 9 1401 22 35 0 0 chr12 106972439 106972468 -14285062 + AT_rich Low_complexity Low_complexity 1 29 0 9 1401 204 346 57 57 chr12 106972725 106972952 -14284578 - L2 LINE L2 -1171 2248 2022 9 1401 1142 82 0 0 chr12 106973672 106973818 -14283712 + B1_Mus2 SINE Alu 2 147 0 9 1401 233 339 75 75 chr12 106973859 106974060 -14283470 - RMER5 LTR ERV1 -208 326 126 9 1401 264 200 117 0 chr12 106974570 106974630 -14282900 + B1F SINE Alu 52 118 -31 9 1401 1321 27 0 0 chr12 106974675 106974822 -14282708 - B1_Mus2 SINE Alu 0 147 1 9 1401 180 0 0 0 chr12 106974859 106974879 -14282651 + (CTA)n Simple_repeat Simple_repeat 1 20 0 9 1401 1403 91 16 0 chr12 106974948 106975135 -14282395 - B2_Mm2 SINE B2 -4 191 2 9 1401 1242 75 61 39 chr12 106975145 106975326 -14282204 - B2_Mm2 SINE B2 -10 185 1 9 1401 1299 76 32 0 chr12 106975494 106975521 -14282009 - B2_Mm1a SINE B2 -2 191 160 9 1401 186 43 0 0 chr12 106975521 106975544 -14281986 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 9 1401 1299 76 32 0 chr12 106975544 106975701 -14281829 - B2_Mm1a SINE B2 -34 159 2 9 1401 215 329 13 0 chr12 106975726 106975802 -14281728 - BC1_Mm scRNA scRNA -65 87 11 9 1401 189 0 0 0 chr12 106976183 106976204 -14281326 + (TA)n Simple_repeat Simple_repeat 1 21 0 9 1401 366 243 97 18 chr12 106976237 106976350 -14281180 + B1F SINE Alu 23 144 -5 9 1401 242 233 32 48 chr12 106976369 106976432 -14281098 + ID4_ SINE ID 2 63 -20 9 1401 2284 137 46 22 chr12 106977234 106977645 -14279885 - RMER16 LTR ERVK 0 533 113 9 1401 639 22 34 0 chr12 106977817 106977906 -14279624 + (TC)n Simple_repeat Simple_repeat 1 92 0 9 1401 507 297 7 21 chr12 106977954 106978095 -14279435 - RSINE1 SINE B4 -5 160 22 9 1401 702 332 60 52 chr12 106978122 106978471 -14279059 - MLT1A0 LTR MaLR -5 360 9 9 1401 225 0 0 0 chr12 106978649 106978674 -14278856 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 9 1401 412 270 96 70 chr12 106978704 106978903 -14278627 - MER57A-int LTR ERV1 -160 6027 5824 9 1401 231 273 15 15 chr12 106978992 106979059 -14278471 + L2c LINE L2 3263 3329 -58 9 1401 444 248 162 0 chr12 106979469 106979586 -14277944 + ID_B1 SINE B4 87 222 -2 9 1401 455 197 112 15 chr12 106979636 106979770 -14277760 + B1F1 SINE Alu 2 148 -1 9 1401 277 208 82 14 chr12 106979770 106979843 -14277687 + ID4_ SINE ID 3 80 -3 9 1401 505 293 68 68 chr12 106979862 106980082 -14277448 + ID_B1 SINE B4 3 222 -2 9 1401 1217 41 7 0 chr12 106981419 106981564 -14275966 - B1_Mm SINE Alu 0 147 2 9 1401 310 161 48 0 chr12 106981571 106981633 -14275897 - PB1D10 SINE Alu 0 117 53 9 1401 270 0 0 0 chr12 106981647 106981677 -14275853 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 9 1401 763 138 82 30 chr12 106981689 106981823 -14275707 - B1_Mur3 SINE Alu 0 149 9 9 1401 291 312 0 0 chr12 106981848 106981928 -14275602 + PB1D10 SINE Alu 38 117 0 9 1401 423 299 7 14 chr12 106982168 106982307 -14275223 - ID_B1 SINE B4 -1 223 86 9 1401 244 304 83 65 chr12 106982225 106982394 -14275136 - MT2B2 LTR ERVL -338 246 75 9 1401 2112 167 28 25 chr12 106982459 106982782 -14274748 - ORR1B1 LTR MaLR 0 394 68 9 1401 2731 97 138 7 chr12 106982782 106983208 -14274322 - RLTR45 LTR ERVK 0 482 1 9 1401 2112 167 28 25 chr12 106983208 106983277 -14274253 - ORR1B1 LTR MaLR -327 67 1 9 1401 3484 68 0 0 chr12 106983696 106984124 -14273406 + L1_Mus1 LINE L1 6140 6567 0 9 1401 305 254 0 0 chr12 106984205 106984272 -14273258 - tRNA-Ala-GCY_ tRNA tRNA -5 70 4 9 1401 225 205 0 0 chr12 106984331 106984370 -14273160 + B3A SINE B2 1 39 -159 9 1401 255 291 13 26 chr12 106984409 106984459 -14273071 + ORR1B1-int LTR MaLR 605 654 -855 9 1401 1165 77 0 0 chr12 106984459 106984602 -14272928 + B1_Mus1 SINE Alu 1 143 -5 9 1401 510 17 0 0 chr12 106984603 106984662 -14272868 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1401 255 291 13 26 chr12 106984662 106984761 -14272769 + ORR1B1-int LTR MaLR 655 754 -755 9 1401 1086 53 0 0 chr12 106984663 106984796 -14272734 + B1_Mus2 SINE Alu 10 142 -5 9 1401 384 22 0 0 chr12 106984797 106984842 -14272688 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1401 1136 29 0 14 chr12 106984843 106984982 -14272548 + B1_Mus2 SINE Alu 10 146 -1 9 1401 893 120 13 0 chr12 106984983 106985133 -14272397 + (GAAA)n Simple_repeat Simple_repeat 3 154 0 9 1401 229 255 0 0 chr12 106985424 106985475 -14272055 + GA-rich Low_complexity Low_complexity 1 51 0 9 1401 534 220 117 25 chr12 106985611 106985774 -14271756 + B3 SINE B2 3 180 -36 9 1401 471 18 0 0 chr12 106985780 106985836 -14271694 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1401 1230 202 37 0 chr12 106986336 106986554 -14270976 - URR1A DNA MER1_type 0 226 1 9 1401 17672 50 1 0 chr12 106986991 106989692 -14267838 - L1Md_F2 LINE L1 -268 6314 3613 9 1401 2064 65 0 4 chr12 106989692 106989955 -14267575 + L1Md_F2 LINE L1 6321 6582 0 9 1401 577 244 26 0 chr12 106989988 106990103 -14267427 + B1F SINE Alu 24 141 -8 9 1401 396 0 0 0 chr12 106991137 106991181 -14266349 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1401 342 282 113 43 chr12 106991527 106991642 -14265888 - PB1D10 SINE Alu 0 127 5 9 1401 1204 208 81 94 chr12 106991706 106992088 -14265442 + MTE2a LTR MaLR 3 379 0 9 1401 328 167 45 0 chr12 106992723 106992789 -14264741 + PB1D10 SINE Alu 40 108 -9 9 1401 227 257 68 41 chr12 106992762 106992835 -14264695 + ZP3AR Satellite Satellite 4 78 -134 9 1401 761 218 146 47 chr12 106992797 106993007 -14264523 + B4A SINE B4 1 231 -61 9 1401 599 191 137 0 chr12 106993007 106993138 -14264392 + B1_Mur2 SINE Alu 1 149 0 9 1401 1087 244 0 5 chr12 106993148 106993358 -14264172 + B3 SINE B2 1 209 -7 9 1401 1217 48 14 0 chr12 106993358 106993502 -14264028 + B1_Mus2 SINE Alu 1 147 0 9 1401 180 0 0 0 chr12 106993521 106993541 -14263989 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1401 1327 88 5 11 chr12 106993570 106993754 -14263776 - B2_Mm1a SINE B2 -8 185 3 9 1401 943 227 24 28 chr12 106993887 106994100 -14263430 + B3 SINE B2 2 213 -3 9 1401 198 0 0 0 chr12 106994112 106994134 -14263396 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1401 362 288 9 46 chr12 106994142 106994251 -14263279 - B3 SINE B2 -111 105 1 9 1401 1288 215 144 9 chr12 106994586 106994905 -14262625 - ORR1D2 LTR MaLR -8 362 1 9 1401 432 0 0 0 chr12 106994975 106995023 -14262507 + (TC)n Simple_repeat Simple_repeat 2 49 0 9 1401 1253 41 0 0 chr12 106995023 106995170 -14262360 - B1_Mus1 SINE Alu -1 147 1 9 1401 216 97 0 0 chr12 106995273 106995304 -14262226 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1401 1237 48 0 0 chr12 106995304 106995451 -14262079 - B1_Mus2 SINE Alu 0 147 1 9 1401 970 259 13 40 chr12 106995609 106995834 -14261696 - ID_B1 SINE B4 0 224 6 9 1401 288 0 0 0 chr12 106995841 106995873 -14261657 + (TA)n Simple_repeat Simple_repeat 2 33 0 9 1401 23 0 0 0 chr12 106996335 106996358 -14261172 + AT_rich Low_complexity Low_complexity 1 23 0 9 1401 187 148 55 0 chr12 106996468 106996508 -14261022 - L2a LINE L2 -8 3418 3390 9 1401 612 171 119 67 chr12 106996644 106996838 -14260692 - RMER10B LTR ERVL -1 397 194 9 1401 1146 168 61 29 chr12 106996861 106997179 -14260351 - RMER10B LTR ERVL -55 387 31 9 1401 3804 117 55 36 chr12 106997181 106997854 -14259676 - RMER6A LTR ERVK -70 686 1 9 1401 351 207 24 35 chr12 106997933 106998018 -14259512 + RSINE1 SINE B4 3 86 -79 9 1401 378 0 0 0 chr12 106998665 106998707 -14258823 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1401 414 0 0 0 chr12 106998707 106998752 -14258778 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1401 389 216 14 0 chr12 106998798 106998872 -14258658 + RSINE1 SINE B4 83 157 -8 9 1401 362 242 129 113 chr12 106998920 106999106 -14258424 + B3 SINE B2 28 216 0 1 1401 298 270 177 62 chr12 106999135 106999242 -14258288 + B4A SINE B4 100 221 -71 1 1401 531 0 0 0 chr12 106999242 106999301 -14258229 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1 1401 298 270 177 62 chr12 106999301 106999323 -14258207 + B4A SINE B4 222 244 -48 1 1401 297 288 34 59 chr12 107000016 107000134 -14257396 - ID_B1 SINE B4 -29 195 81 1 1401 237 24 47 23 chr12 107000172 107000215 -14257315 + (TCC)n Simple_repeat Simple_repeat 3 46 0 2 1401 392 331 8 24 chr12 107000258 107000382 -14257148 - RSINE1 SINE B4 -20 145 24 3 1401 762 137 52 30 chr12 107000430 107000565 -14256965 + B1_Mus2 SINE Alu 1 138 -9 4 1401 1008 72 0 7 chr12 107000947 107001087 -14256443 - B1_Mus2 SINE Alu 0 147 9 5 1401 595 217 0 0 chr12 107001138 107001253 -14256277 - ID_B1 SINE B4 -5 219 105 6 1401 583 288 124 7 chr12 107001253 107001526 -14256004 - L1MB1 LINE L1 -121 6047 5743 7 1401 438 301 188 25 chr12 107001605 107001850 -14255680 + B4A SINE B4 4 288 -4 8 1401 294 336 0 41 chr12 107001903 107001918 -14255612 + ID_B1 SINE B4 69 133 -91 9 1401 356 302 0 10 chr12 107001918 107002015 -14255515 + PB1D10 SINE Alu 1 96 -21 1 1401 378 218 13 0 chr12 107002013 107002091 -14255439 + PB1D7 SINE Alu 42 120 0 1 1401 189 107 0 0 chr12 107002160 107002188 -14255342 + (GAA)n Simple_repeat Simple_repeat 3 30 0 1 1401 258 143 0 0 chr12 107002257 107002306 -14255224 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1401 655 290 42 19 chr12 107002378 107002592 -14254938 - B4A SINE B4 -18 274 56 1 1401 231 266 95 153 chr12 107002609 107002792 -14254738 - B3 SINE B2 -6 210 38 1 1401 311 0 26 0 chr12 107002792 107002831 -14254699 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1 1401 673 221 7 7 chr12 107002835 107002976 -14254554 - B1_Mur2 SINE Alu -8 141 1 1 1401 231 266 95 153 chr12 107002976 107003009 -14254521 - B3 SINE B2 -179 37 2 1 1401 1458 75 0 11 chr12 107003326 107003485 -14254045 + B2_Mm1a SINE B2 2 160 -33 1 1401 207 0 0 0 chr12 107003485 107003508 -14254022 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1401 1458 75 0 11 chr12 107003508 107003538 -14253992 + B2_Mm1a SINE B2 161 188 -5 1 1401 230 137 74 0 chr12 107003545 107003621 -14253909 + ORR1D2 LTR MaLR 5 86 -281 2 1401 1167 82 0 0 chr12 107003658 107003805 -14253725 + B1_Mus2 SINE Alu 1 147 0 2 1401 189 0 0 0 chr12 107003805 107003826 -14253704 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1401 1132 88 11 17 chr12 107003840 107004014 -14253516 + B2_Mm1a SINE B2 14 186 -7 2 1401 784 205 98 19 chr12 107004011 107004039 -14253491 + ORR1D2 LTR MaLR 137 166 -204 2 1401 207 0 0 0 chr12 107004039 107004062 -14253468 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1401 231 61 0 0 chr12 107004062 107004094 -14253436 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1401 784 205 98 19 chr12 107004094 107004278 -14253252 + ORR1D2 LTR MaLR 167 366 -4 2 1401 218 192 49 49 chr12 107004339 107004421 -14253109 + A-rich Low_complexity Low_complexity 6 87 0 2 1401 1109 56 14 0 chr12 107005390 107005532 -14251998 + B1_Mm SINE Alu 2 145 -2 2 1401 519 60 0 0 chr12 107005532 107005599 -14251931 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 1401 1086 84 28 0 chr12 107005726 107005868 -14251662 + B1_Mus2 SINE Alu 2 147 0 2 1401 273 57 0 0 chr12 107005874 107005909 -14251621 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1401 407 292 99 29 chr12 107005953 107006161 -14251369 + B4A SINE B4 66 288 -4 3 1401 366 245 0 0 chr12 107006204 107006302 -14251228 + (CA)n Simple_repeat Simple_repeat 2 99 0 3 1401 295 254 189 10 chr12 107006398 107006524 -14251006 + B1F2 SINE Alu 5 149 0 3 1401 887 219 15 19 chr12 107007102 107007307 -14250223 + B3 SINE B2 12 215 -1 3 1401 564 218 0 33 chr12 107007519 107007671 -14249859 - B1F SINE Alu 0 149 3 3 1401 1272 173 9 9 chr12 107008328 107008544 -14248986 - B3 SINE B2 0 216 1 3 1401 414 0 0 0 chr12 107008725 107008771 -14248759 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1401 1557 179 67 64 chr12 107009093 107009469 -14248061 + ORR1C2 LTR MaLR 1 377 -7 3 1401 1001 254 113 55 chr12 107009701 107009794 -14247736 - ORR1D2 LTR MaLR -4 366 275 3 1401 1482 186 173 11 chr12 107009794 107010078 -14247452 - MTD LTR MaLR 0 419 76 4 1401 189 74 0 0 chr12 107010078 107010105 -14247425 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 4 1401 1482 186 173 11 chr12 107010105 107010178 -14247352 - MTD LTR MaLR -344 75 5 4 1401 1001 254 113 55 chr12 107010178 107010430 -14247100 - ORR1D2 LTR MaLR -96 274 1 3 1401 237 61 0 0 chr12 107010655 107010680 -14246850 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1401 1261 34 0 0 chr12 107010680 107010827 -14246703 - B1_Mm SINE Alu 0 147 1 4 1401 237 61 0 0 chr12 107010827 107010834 -14246696 + (T)n Simple_repeat Simple_repeat 1 7 0 4 1401 3956 45 9 98 chr12 107010933 107011495 -14246035 - RLTR1B LTR ERV1 0 512 1 4 1401 250 346 9 0 chr12 107011874 107011981 -14245549 + MIR SINE MIR 108 215 -47 4 1401 250 242 29 78 chr12 107012072 107012175 -14245355 + L1M4 LINE L1 2120 2217 -3660 4 1401 465 222 134 34 chr12 107012195 107012344 -14245186 + RSINE1 SINE B4 2 165 0 4 1401 219 202 0 31 chr12 107012344 107012441 -14245089 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1401 446 257 28 28 chr12 107012556 107012576 -14244954 - ID_B1 SINE B4 0 224 82 5 1401 766 163 0 0 chr12 107012576 107012699 -14244831 - B1_Mus1 SINE Alu -25 123 1 5 1401 365 236 38 94 chr12 107012699 107012755 -14244775 - MT2B2 LTR ERVL -430 154 108 5 1401 918 314 122 24 chr12 107012755 107013330 -14244200 + L1M2 LINE L1 2381 3011 -3132 5 1401 322 284 85 76 chr12 107013388 107013506 -14244024 + B1F2 SINE Alu 4 122 -27 5 1401 289 110 121 121 chr12 107013496 107013579 -14243951 + B1_Mur3 SINE Alu 67 149 0 5 1401 27 29 0 0 chr12 107013579 107013613 -14243917 + AT_rich Low_complexity Low_complexity 1 34 0 5 1401 926 115 14 0 chr12 107013876 107014015 -14243515 + B1_Mur4 SINE Alu 1 141 -9 5 1401 1095 101 0 0 chr12 107014024 107014183 -14243347 + (TAGA)n Simple_repeat Simple_repeat 1 159 0 5 1401 375 302 86 22 chr12 107014188 107014456 -14243074 + L1M2 LINE L1 3268 3552 -2591 5 1401 477 90 0 0 chr12 107014463 107014530 -14243000 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1401 276 333 72 67 chr12 107014538 107014718 -14242812 - B4A SINE B4 -22 270 90 6 1401 1056 161 0 11 chr12 107014713 107014901 -14242629 - B3 SINE B2 -30 186 1 6 1401 266 289 30 20 chr12 107014901 107014995 -14242535 - B4A SINE B4 -196 96 2 6 1401 346 242 77 23 chr12 107015008 107015182 -14242348 + L1M4 LINE L1 3544 3760 -2386 4 1401 445 239 83 42 chr12 107015182 107015326 -14242204 + ID_B1 SINE B4 67 216 -8 6 1401 1186 49 7 0 chr12 107015765 107015909 -14241621 - B1_Mm SINE Alu 0 147 3 6 1401 609 305 17 0 chr12 107016256 107016430 -14241100 + B3A SINE B2 1 177 -21 6 1401 188 67 33 0 chr12 107016438 107016468 -14241062 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1401 597 298 74 5 chr12 107016564 107016753 -14240777 + B4 SINE B4 67 268 -24 6 1401 558 0 0 0 chr12 107016755 107016817 -14240713 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1401 796 51 17 8 chr12 107016918 107017036 -14240494 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 6 1401 885 86 117 0 chr12 107017036 107017164 -14240366 - B1_Mm SINE Alu -3 144 2 6 1401 836 124 0 7 chr12 107017165 107017303 -14240227 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 7 1401 582 248 7 40 chr12 107017362 107017513 -14240017 + RSINE1 SINE B4 5 150 -15 7 1401 1179 68 7 0 chr12 107017677 107017823 -14239707 + B1_Mus2 SINE Alu 1 147 0 7 1401 623 220 56 70 chr12 107017838 107018053 -14239477 - B3 SINE B2 0 216 5 7 1401 404 305 89 13 chr12 107018094 107018342 -14239188 + Lx7 LINE L1 5625 5925 -1771 7 1401 1377 76 54 0 chr12 107018696 107018881 -14238649 - B2_Mm2 SINE B2 0 195 1 7 1401 22 0 0 0 chr12 107018956 107018978 -14238552 + GC_rich Low_complexity Low_complexity 1 22 0 7 1401 601 222 148 21 chr12 107019252 107019375 -14238155 - B3 SINE B2 0 216 68 7 1401 522 0 0 0 chr12 107019375 107019433 -14238097 + (TGG)n Simple_repeat Simple_repeat 2 59 0 7 1401 601 222 148 21 chr12 107019433 107019498 -14238032 - B3 SINE B2 -149 67 4 7 1401 182 154 19 0 chr12 107019505 107019539 -14237991 + T-rich Low_complexity Low_complexity 19 53 0 7 1401 1243 41 0 0 chr12 107019539 107019684 -14237846 - B1_Mus2 SINE Alu -1 146 2 8 1401 182 154 19 0 chr12 107019684 107019701 -14237829 + T-rich Low_complexity Low_complexity 2 18 0 8 1401 231 36 0 0 chr12 107019822 107019850 -14237680 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1401 195 42 0 0 chr12 107020686 107020710 -14236820 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1401 315 0 0 0 chr12 107020735 107020770 -14236760 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1401 323 136 0 48 chr12 107020803 107020865 -14236665 + B1_Mur4 SINE Alu 2 60 -90 8 1401 269 254 0 0 chr12 107020935 107020955 -14236575 + ID SINE ID 4 70 -154 8 1401 281 170 0 0 chr12 107020955 107021002 -14236528 + BC1_Mm scRNA scRNA 23 69 -83 8 1401 749 67 0 9 chr12 107021081 107021186 -14236344 + B1_Mus2 SINE Alu 1 104 -43 8 1401 306 0 0 0 chr12 107021186 107021220 -14236310 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 8 1401 1126 35 43 0 chr12 107021355 107021496 -14236034 + B1_Mus2 SINE Alu 1 147 0 9 1401 266 48 71 0 chr12 107021496 107021538 -14235992 + (GAAAA)n Simple_repeat Simple_repeat 3 47 0 9 1401 192 77 0 0 chr12 107021713 107021739 -14235791 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1401 1258 20 0 0 chr12 107021739 107021885 -14235645 - B1_Mus2 SINE Alu 0 147 2 9 1401 419 198 12 0 chr12 107022173 107022254 -14235276 + ID_B1 SINE B4 73 154 -70 8 1401 360 258 62 0 chr12 107022190 107022287 -14235243 + PB1D10 SINE Alu 9 111 -6 9 1401 228 35 0 0 chr12 107022289 107022318 -14235212 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9 1401 231 36 0 0 chr12 107022777 107022805 -14234725 + (G)n Simple_repeat Simple_repeat 1 28 0 9 1401 37 86 0 0 chr12 107023154 107023247 -14234283 + GC_rich Low_complexity Low_complexity 1 93 0 9 1401 333 316 97 39 chr12 107024930 107025137 -14232393 - MER20 DNA MER1_type 0 219 1 9 1401 645 91 32 24 chr12 107025338 107025462 -14232068 + L1Md_F2 LINE L1 6456 6580 -2 9 1401 29 0 0 0 chr12 107025768 107025797 -14231733 + AT_rich Low_complexity Low_complexity 1 29 0 1 1401 301 237 188 15 chr12 107025918 107025938 -14231592 - B4A SINE B4 -47 245 91 1 1401 615 161 27 0 chr12 107025938 107026050 -14231480 - PB1D9 SINE Alu -1 119 5 1 1401 275 194 45 109 chr12 107026441 107026551 -14230979 + Charlie1a DNA MER1_type 530 632 -823 1 1401 394 264 32 8 chr12 107026656 107026782 -14230748 + Charlie1a DNA MER1_type 1063 1191 -264 1 1401 231 36 0 0 chr12 107026982 107027010 -14230520 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1401 841 109 0 21 chr12 107027015 107027155 -14230375 - B1_Mm SINE Alu -4 143 7 1 1401 704 266 55 58 chr12 107027424 107027699 -14229831 - B4A SINE B4 -18 274 1 1 1401 1530 172 42 117 chr12 107028110 107028322 -14229208 + MTD LTR MaLR 1 200 -219 1 1401 877 94 61 68 chr12 107028322 107028470 -14229060 + B1_Mus1 SINE Alu 1 147 -1 1 1401 1530 172 42 117 chr12 107028470 107028684 -14228846 + MTD LTR MaLR 201 395 -24 1 1401 382 301 81 14 chr12 107028795 107028943 -14228587 - RSINE1 SINE B4 -4 161 4 1 1401 1280 92 43 5 chr12 107029067 107029252 -14228278 - B2_Mm2 SINE B2 -2 193 2 1 1401 1261 47 0 0 chr12 107029569 107029717 -14227813 + B1_Mus1 SINE Alu 1 148 0 1 1401 244 183 148 16 chr12 107029767 107029828 -14227702 - B1_Mur4 SINE Alu -34 116 48 1 1401 599 239 14 14 chr12 107030148 107030292 -14227238 - B1_Mur4 SINE Alu -5 145 2 1 1401 232 174 0 42 chr12 107030331 107030379 -14227151 - PB1 SINE Alu -29 98 53 1 1401 1219 55 0 7 chr12 107030429 107030577 -14226953 + B1_Mm SINE Alu 1 147 0 1 1401 721 285 116 0 chr12 107030657 107030934 -14226596 - MTEb LTR MaLR -70 309 1 1 1401 426 175 51 10 chr12 107031137 107031235 -14226295 - PB1D10 SINE Alu -7 110 9 1 1401 746 231 64 25 chr12 107031415 107031619 -14225911 + B3 SINE B2 4 215 -1 1 1401 296 243 20 11 chr12 107031855 107031946 -14225584 + B1F SINE Alu 2 92 -55 1 1401 459 0 0 0 chr12 107031968 107032019 -14225511 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 1 1401 1058 75 0 116 chr12 107032019 107032200 -14225330 - B2_Mm1a SINE B2 -33 160 1 1 1401 287 387 0 0 chr12 107032326 107032432 -14225098 - B1F SINE Alu -43 106 1 1 1401 696 225 34 68 chr12 107032457 107032662 -14224868 - B3A SINE B2 0 198 1 1 1401 255 41 61 0 chr12 107032800 107032849 -14224681 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 1 1401 1241 34 7 0 chr12 107032849 107032996 -14224534 - B1_Mus1 SINE Alu 0 148 1 1 1401 423 277 58 58 chr12 107033415 107033553 -14223977 - RSINE1 SINE B4 -20 145 8 1 1401 1213 55 0 0 chr12 107033742 107033888 -14223642 + B1_Mus1 SINE Alu 3 148 0 1 1401 260 311 54 0 chr12 107033896 107033970 -14223560 - PB1D7 SINE Alu -20 100 23 1 1401 366 275 0 11 chr12 107034114 107034206 -14223324 - B1F SINE Alu -58 91 1 1 1401 234 320 0 39 chr12 107034136 107034214 -14223316 - B4A SINE B4 -140 152 78 1 1401 297 211 150 0 chr12 107034469 107034568 -14222962 - PB1D10 SINE Alu -6 143 23 1 1401 414 252 65 0 chr12 107034811 107034918 -14222612 - ID_B1 SINE B4 -25 199 86 1 1401 215 31 0 30 chr12 107035127 107035160 -14222370 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1401 1070 82 0 0 chr12 107035160 107035295 -14222235 - B1_Mus1 SINE Alu -13 135 1 1 1401 1353 101 0 21 chr12 107035643 107035835 -14221695 - B2_Mm2 SINE B2 -7 188 1 1 1401 374 231 0 0 chr12 107035845 107035923 -14221607 - B4 SINE B4 -207 85 8 1 1401 214 336 18 0 chr12 107035966 107036079 -14221451 + (TATATG)n Simple_repeat Simple_repeat 3 117 0 1 1401 358 180 216 20 chr12 107036226 107036328 -14221202 - ID_B1 SINE B4 -13 211 90 1 1401 405 39 0 0 chr12 107036703 107036754 -14220776 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1 1401 959 97 13 89 chr12 107036754 107036912 -14220618 - B1_Mus1 SINE Alu -2 146 1 1 1401 294 283 81 0 chr12 107037632 107037731 -14219799 + PB1D10 SINE Alu 6 112 -5 1 1401 397 191 408 32 chr12 107038324 107038481 -14219049 + B3 SINE B2 1 216 0 1 1401 506 271 0 8 chr12 107038594 107038713 -14218817 + PB1D9 SINE Alu 2 119 -1 1 1401 502 176 29 19 chr12 107038719 107038823 -14218707 + PB1D10 SINE Alu 13 117 0 1 1401 571 222 58 15 chr12 107039033 107039170 -14218360 - B1_Mur4 SINE Alu -2 148 6 1 1401 300 252 67 57 chr12 107039401 107039506 -14218024 + PB1D10 SINE Alu 12 117 0 1 1401 626 235 17 61 chr12 107039638 107039819 -14217711 - B3 SINE B2 -6 210 38 1 1401 1236 55 0 0 chr12 107039918 107040064 -14217466 + B1_Mus1 SINE Alu 1 146 -2 1 1401 1258 95 10 35 chr12 107040346 107040543 -14216987 + B2_Mm2 SINE B2 1 192 -3 1 1401 279 0 0 0 chr12 107040914 107040945 -14216585 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1 1401 473 308 65 19 chr12 107041143 107041464 -14216066 - L1M2 LINE L1 -1297 4846 4511 1 1401 361 338 7 0 chr12 107041483 107041588 -14215942 - B1F1 SINE Alu -10 110 1 1 1401 1143 73 16 43 chr12 107041608 107041795 -14215735 - B2_Mm2 SINE B2 0 195 14 1 1401 1081 70 21 0 chr12 107041805 107041947 -14215583 - B1_Mm SINE Alu 0 147 3 1 1401 282 250 33 74 chr12 107042013 107042134 -14215396 - PB1D10 SINE Alu 0 117 2 1 1401 320 274 30 61 chr12 107042434 107042566 -14214964 - RSINE1 SINE B4 -28 137 10 1 1401 693 173 57 7 chr12 107042604 107042744 -14214786 - B1_Mus1 SINE Alu 0 148 2 1 1401 588 280 44 15 chr12 107042755 107042958 -14214572 - ID_B1 SINE B4 -8 216 8 1 1401 433 319 113 5 chr12 107043701 107043887 -14213643 - B3 SINE B2 -6 210 5 1 1401 194 0 39 0 chr12 107043939 107043965 -14213565 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1401 383 181 149 0 chr12 107043965 107044059 -14213471 - PB1D10 SINE Alu -1 116 9 1 1401 189 0 0 0 chr12 107044549 107044570 -14212960 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1401 211 344 37 45 chr12 107045161 107045183 -14212347 + B1_Mus1 SINE Alu 7 139 -9 1 1401 485 259 9 0 chr12 107045183 107045295 -14212235 + ID_B1 SINE B4 103 215 -9 1 1401 1212 22 0 0 chr12 107046089 107046228 -14211302 - B1_Mus2 SINE Alu -7 140 2 1 1401 368 235 0 24 chr12 107047978 107048061 -14209469 + ID4_ SINE ID 2 82 -1 1 1401 27 0 0 0 chr12 107049935 107049962 -14207568 + AT_rich Low_complexity Low_complexity 1 27 0 1 1401 23 68 0 0 chr12 107053310 107053354 -14204176 + AT_rich Low_complexity Low_complexity 1 44 0 1 1401 336 299 0 40 chr12 107053507 107053608 -14203922 + ID_B1 SINE B4 106 202 -22 1 1401 287 331 24 41 chr12 107053608 107053630 -14203900 + B1F SINE Alu 25 145 -4 1 1401 27 0 0 0 chr12 107053902 107053929 -14203601 + AT_rich Low_complexity Low_complexity 1 27 0 1 1401 788 237 80 5 chr12 107054146 107054345 -14203185 + B3 SINE B2 1 214 -2 1 1401 30 45 0 0 chr12 107054437 107054481 -14203049 + AT_rich Low_complexity Low_complexity 1 44 0 1 1401 252 207 0 0 chr12 107054760 107054818 -14202712 + ID_B1 SINE B4 86 143 -81 1 1401 198 0 0 0 chr12 107054877 107054899 -14202631 + (CTGTG)n Simple_repeat Simple_repeat 5 26 0 1 1401 534 16 0 0 chr12 107054928 107054991 -14202539 + (CGTG)n Simple_repeat Simple_repeat 4 66 0 1 1401 1203 28 7 7 chr12 107055976 107056121 -14201409 - B1_Mm SINE Alu -1 146 2 1 1401 238 262 91 86 chr12 107056520 107056695 -14200835 - Tigger9b DNA MER2_type -202 422 247 1 1401 237 106 170 0 chr12 107057187 107057234 -14200296 - PB1 SINE Alu -7 120 66 1 1401 504 155 50 40 chr12 107057860 107057961 -14199569 - PB1D10 SINE Alu -7 113 12 1 1401 611 230 8 0 chr12 107057985 107058111 -14199419 - B1_Mur2 SINE Alu -1 148 22 1 1401 22 0 0 0 chr12 107058177 107058199 -14199331 + AT_rich Low_complexity Low_complexity 1 22 0 1 1401 275 0 29 0 chr12 107058199 107058234 -14199296 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1401 299 224 116 12 chr12 107059430 107059516 -14198014 + Tigger7 DNA MER2_type 154 248 -2243 1 1401 682 294 26 32 chr12 107060146 107060336 -14197194 - B3 SINE B2 -6 210 22 1 1401 303 261 136 25 chr12 107060786 107060904 -14196626 - ID_B1 SINE B4 0 224 94 1 1401 312 331 86 12 chr12 107061073 107061084 -14196446 - B4A SINE B4 -41 251 185 1 1401 668 196 73 29 chr12 107061084 107061221 -14196309 - B1_Mur2 SINE Alu -1 148 6 1 1401 312 331 86 12 chr12 107061221 107061235 -14196295 - B4A SINE B4 -41 184 78 1 1401 463 296 132 0 chr12 107061241 107061400 -14196130 - B3A SINE B2 -16 182 3 1 1401 358 240 221 0 chr12 107062301 107062405 -14195125 + RSINE1 SINE B4 3 129 -36 1 1401 766 239 49 6 chr12 107062460 107062624 -14194906 + ID_B1 SINE B4 1 171 -53 1 1401 244 340 50 10 chr12 107062539 107062640 -14194890 + B1F2 SINE Alu 6 110 -39 1 1401 302 341 55 16 chr12 107062684 107062812 -14194718 + B1F1 SINE Alu 2 134 -15 1 1401 992 86 0 0 chr12 107063308 107063436 -14194094 + B1_Mus1 SINE Alu 8 135 -13 1 1401 216 0 0 0 chr12 107063436 107063460 -14194070 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1401 490 295 57 7 chr12 107064176 107064316 -14193214 - B1F1 SINE Alu 0 149 3 1 1401 269 330 21 54 chr12 107064236 107064329 -14193201 - B4A SINE B4 -123 169 80 1 1401 249 250 186 97 chr12 107064374 107064388 -14193142 + ID_B1 SINE B4 77 211 -13 1 1401 420 222 36 100 chr12 107064388 107064498 -14193032 + PB1 SINE Alu 13 115 -12 1 1401 564 157 19 10 chr12 107064492 107064595 -14192935 - B1_Mus2 SINE Alu -2 145 42 1 1401 214 0 0 157 chr12 107064598 107064700 -14192830 + (CTCTG)n Simple_repeat Simple_repeat 5 90 0 2 1401 264 224 0 79 chr12 107064701 107064764 -14192766 - B1_Mus2 SINE Alu -88 59 2 1 1401 1038 66 44 0 chr12 107066199 107066335 -14191195 - B1_Mus1 SINE Alu -6 142 1 2 1401 216 0 0 0 chr12 107066696 107066720 -14190810 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1401 825 83 0 62 chr12 107066728 107066856 -14190674 - B1_Mus1 SINE Alu -26 122 3 2 1401 375 194 0 163 chr12 107066747 107066870 -14190660 - MT2B LTR ERVL -344 257 155 2 1401 401 245 253 19 chr12 107066885 107067039 -14190491 - B3A SINE B2 -8 190 1 2 1401 229 230 168 84 chr12 107067039 107067134 -14190396 - PB1D10 SINE Alu 0 117 15 2 1401 1187 98 59 21 chr12 107067756 107067943 -14189587 - B2_Mm2 SINE B2 -1 194 1 2 1401 262 309 59 40 chr12 107068765 107068866 -14188664 - PB1D10 SINE Alu -13 104 2 2 1401 234 293 13 153 chr12 107069182 107069339 -14188191 - B1F SINE Alu 0 149 15 2 1401 259 299 252 0 chr12 107070534 107070641 -14186889 + B4A SINE B4 1 134 -158 2 1401 291 297 0 13 chr12 107070660 107070735 -14186795 + B4A SINE B4 216 289 -3 2 1401 186 43 0 0 chr12 107072854 107072877 -14184653 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1401 384 77 0 0 chr12 107077703 107077755 -14179775 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1401 223 346 12 12 chr12 107078710 107078792 -14178738 - ID4 SINE ID 0 83 2 2 1401 1385 78 39 0 chr12 107078879 107079058 -14178472 - B2_Mm2 SINE B2 -8 187 2 2 1401 226 241 56 0 chr12 107079937 107079991 -14177539 - PB1D10 SINE Alu -60 57 1 2 1401 232 351 0 49 chr12 107080042 107080123 -14177407 - B1F1 SINE Alu -67 82 6 2 1401 298 271 28 107 chr12 107080166 107080344 -14177186 - RSINE1 SINE B4 0 165 2 2 1401 368 180 201 90 chr12 107082271 107082405 -14175125 - B1_Mur1 SINE Alu 0 149 1 2 1401 520 146 90 0 chr12 107082930 107083019 -14174511 - B1_Mur4 SINE Alu -7 143 47 2 1401 232 218 0 52 chr12 107082973 107083031 -14174499 - 4.5SRNA scRNA scRNA -8 86 32 2 1401 377 279 54 9 chr12 107083052 107083164 -14174366 - PB1D10 SINE Alu 0 117 1 2 1401 261 260 69 118 chr12 107083164 107083209 -14174321 - MT2B2 LTR ERVL -426 158 121 2 1401 399 263 50 0 chr12 107083209 107083308 -14174222 + B1_Mur2 SINE Alu 1 104 -45 2 1401 326 213 147 11 chr12 107085408 107085503 -14172027 + PB1D10 SINE Alu 3 110 -7 2 1401 210 253 177 0 chr12 107085530 107085609 -14171921 + RSINE1 SINE B4 4 96 -69 2 1402 534 214 126 17 chr12 107086988 107087107 -14170423 - RSINE1 SINE B4 -31 134 3 2 1402 396 0 0 0 chr12 107087313 107087357 -14170173 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1402 1395 74 26 11 chr12 107088304 107088495 -14169035 + B2_Mm2 SINE B2 2 195 0 2 1402 696 74 0 0 chr12 107089774 107089869 -14167661 + (TCCC)n Simple_repeat Simple_repeat 4 98 0 2 1402 660 255 7 7 chr12 107089883 107090029 -14167501 - B1_Mur2 SINE Alu 0 149 4 2 1402 455 234 43 35 chr12 107090086 107090201 -14167329 - RSINE1 SINE B4 -38 127 12 2 1402 249 252 108 115 chr12 107090220 107090368 -14167162 - B2_Mm1a SINE B2 -8 185 39 2 1402 195 163 186 0 chr12 107090808 107090851 -14166679 + MIRc SINE MIR 99 149 -119 2 1402 270 0 0 0 chr12 107092395 107092425 -14165105 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1402 848 237 43 14 chr12 107093614 107093824 -14163706 - ID_B1 SINE B4 -8 216 1 2 1402 234 220 0 0 chr12 107094018 107094077 -14163453 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1402 200 364 0 38 chr12 107094158 107094341 -14163189 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 2 1402 261 0 0 0 chr12 107095415 107095444 -14162086 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1402 348 24 0 0 chr12 107095574 107095615 -14161915 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1402 871 222 291 3 chr12 107097054 107097343 -14160187 - MTE2b LTR MaLR -7 372 1 2 1402 540 242 22 36 chr12 107097706 107097843 -14159687 - B3A SINE B2 0 198 64 2 1402 563 215 82 11 chr12 107098586 107098712 -14158818 + B3A SINE B2 41 171 -27 2 1402 312 70 0 0 chr12 107098712 107098755 -14158775 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1402 291 226 85 105 chr12 107098755 107098781 -14158749 + B2_Mm2 SINE B2 161 189 -6 2 1402 1258 206 127 32 chr12 107098810 107099156 -14158374 - MTE2b LTR MaLR 0 379 1 2 1402 513 84 0 0 chr12 107101230 107101301 -14156229 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1402 2203 87 45 55 chr12 107102364 107102635 -14154895 + ORR1A2 LTR MaLR 1 270 -57 2 1402 1163 55 0 20 chr12 107102635 107102784 -14154746 + B1_Mm SINE Alu 2 147 0 2 1402 2203 87 45 55 chr12 107102784 107102842 -14154688 + ORR1A2 LTR MaLR 271 327 0 2 1402 1465 34 151 5 chr12 107103079 107103284 -14154246 + MTB LTR MaLR 1 235 -165 2 1402 1215 55 0 0 chr12 107103284 107103430 -14154100 + B1_Mus2 SINE Alu 2 147 0 2 1402 2363 182 31 15 chr12 107103790 107104288 -14153242 - Lx5 LINE L1 -29 7029 6477 2 1402 237 132 0 0 chr12 107104363 107104401 -14153129 + (CAG)n Simple_repeat Simple_repeat 1 38 0 2 1402 1501 174 25 152 chr12 107104495 107104928 -14152602 - ORR1C1 LTR MaLR 0 378 1 2 1402 1074 31 0 0 chr12 107105019 107105147 -14152383 + B1_Mm SINE Alu 12 139 -8 2 1402 437 0 19 0 chr12 107105147 107105200 -14152330 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 1402 1915 136 59 78 chr12 107105480 107105854 -14151676 - ORR1B2 LTR MaLR 0 367 1 2 1402 346 294 114 40 chr12 107105854 107106083 -14151447 + MLT1G1 LTR MaLR 158 367 -181 2 1402 1062 231 69 55 chr12 107106601 107106890 -14150640 - Lx5 LINE L1 0 7050 6758 2 1402 369 0 0 0 chr12 107107142 107107183 -14150347 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2 1402 1470 212 16 91 chr12 107107448 107107878 -14149652 + RMER10B LTR ERVL 1 398 0 2 1402 624 187 129 0 chr12 107107994 107108133 -14149397 - ID_B1 SINE B4 -16 208 52 2 1402 573 310 122 12 chr12 107108171 107108498 -14149032 + MT2A LTR ERVL 171 533 0 2 1402 276 224 17 0 chr12 107108498 107108553 -14148977 - ID SINE ID -167 57 2 2 1402 567 219 0 0 chr12 107109381 107109559 -14147971 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1402 246 128 0 0 chr12 107109591 107109630 -14147900 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 2 1402 471 224 0 0 chr12 107109639 107109813 -14147717 + (TG)n Simple_repeat Simple_repeat 1 174 0 2 1402 834 169 66 0 chr12 107109988 107110124 -14147406 - B1_Mur4 SINE Alu -4 146 2 2 1402 361 284 105 26 chr12 107110717 107110869 -14146661 + RMER15 LTR ERVL 347 510 -65 2 1402 230 294 34 45 chr12 107110981 107111070 -14146460 + B1_Mm SINE Alu 9 96 -51 2 1402 978 110 7 0 chr12 107111103 107111239 -14146291 + B2_Mm1t SINE B2 1 137 -56 2 1402 1117 90 7 0 chr12 107111288 107111433 -14146097 + B1_Mus1 SINE Alu 3 148 0 2 1402 189 0 0 0 chr12 107111479 107111500 -14146030 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2 1402 822 202 27 60 chr12 107111597 107111781 -14145749 + B3 SINE B2 35 212 -4 2 1402 31 26 0 0 chr12 107111782 107111820 -14145710 + AT_rich Low_complexity Low_complexity 1 38 0 2 1402 636 196 17 27 chr12 107112051 107112201 -14145329 + B1_Mur1 SINE Alu 2 148 -2 2 1402 249 247 203 21 chr12 107112796 107112961 -14144569 + L2b LINE L2 3177 3387 0 2 1402 234 0 0 0 chr12 107114087 107114113 -14143417 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1402 360 0 0 0 chr12 107114733 107114773 -14142757 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1402 338 232 14 0 chr12 107115942 107116011 -14141519 + ID4_ SINE ID 5 74 -9 2 1402 618 68 0 0 chr12 107116021 107116109 -14141421 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 1402 2432 57 3 0 chr12 107116151 107116452 -14141078 - ORR1A2 LTR MaLR -8 319 18 2 1402 632 205 16 16 chr12 107116454 107116578 -14140952 + RSINE1 SINE B4 19 142 -23 2 1402 189 154 24 49 chr12 107116580 107116621 -14140909 - L2c LINE L2 -231 3156 3117 2 1402 496 252 131 55 chr12 107117930 107118258 -14139272 + L1MA6 LINE L1 5865 6217 -83 2 1402 304 346 0 9 chr12 107118319 107118424 -14139106 + B4 SINE B4 7 110 -182 2 1402 272 366 24 35 chr12 107119011 107119181 -14138349 + MLT1H1 LTR MaLR 40 207 -348 2 1402 457 256 42 104 chr12 107119685 107119829 -14137701 + MTE2a LTR MaLR 36 170 -209 2 1402 552 68 83 30 chr12 107120725 107120893 -14136637 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 2 1402 605 63 108 0 chr12 107120916 107121138 -14136392 + (CACCAT)n Simple_repeat Simple_repeat 1 245 0 2 1402 640 50 112 0 chr12 107121150 107121310 -14136220 + (CACCAT)n Simple_repeat Simple_repeat 1 178 0 2 1402 420 220 84 59 chr12 107121318 107121521 -14136009 + HAL1-2a_MD LINE L1 2326 2533 -491 2 1402 511 81 106 0 chr12 107121572 107121733 -14135797 + (CACCAT)n Simple_repeat Simple_repeat 1 178 0 2 1402 1552 151 79 102 chr12 107123477 107123709 -14133821 + RMER17C LTR ERVK 1 195 -215 2 1402 711 0 0 0 chr12 107123709 107123788 -14133742 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 1402 1552 151 79 102 chr12 107123788 107123936 -14133594 + RMER17C LTR ERVK 196 351 -59 2 1402 432 0 0 0 chr12 107123936 107123984 -14133546 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1402 1552 151 79 102 chr12 107123984 107124022 -14133508 + RMER17C LTR ERVK 352 408 -2 2 1402 189 147 0 0 chr12 107124038 107124072 -14133458 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 2 1402 252 294 75 66 chr12 107124094 107124362 -14133168 - L2b LINE L2 -17 3370 3106 2 1402 631 97 18 0 chr12 107125018 107125132 -14132398 + (GA)n Simple_repeat Simple_repeat 2 117 0 2 1402 302 138 0 17 chr12 107125228 107125287 -14132243 + GA-rich Low_complexity Low_complexity 2 59 0 2 1402 195 322 84 8 chr12 107125299 107125418 -14132112 - L2c LINE L2 -233 3154 3027 2 1402 1048 217 126 20 chr12 107125483 107125598 -14131932 - MTE2a LTR MaLR -47 332 199 2 1402 351 0 0 0 chr12 107125598 107125637 -14131893 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1402 432 0 0 0 chr12 107125637 107125684 -14131846 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1402 1048 235 133 20 chr12 107125684 107125892 -14131638 - MTE2a LTR MaLR -175 244 7 2 1402 991 82 0 13 chr12 107125893 107126042 -14131488 + (TCCC)n Simple_repeat Simple_repeat 2 148 0 3 1402 740 196 105 0 chr12 107126047 107126180 -14131350 - B1_Mus1 SINE Alu -1 147 1 3 1402 2439 296 50 29 chr12 107126181 107127353 -14130177 - L1_Mur3 LINE L1 -2304 3576 2380 3 1402 2350 116 3 3 chr12 107127369 107127707 -14129823 - ORR1A1 LTR MaLR -8 338 1 3 1402 479 279 21 31 chr12 107127711 107127903 -14129627 - L1_Mur3 LINE L1 -3516 2364 2175 3 1402 590 261 19 31 chr12 107127948 107128110 -14129420 + B3A SINE B2 39 198 0 3 1402 517 301 78 39 chr12 107128129 107128564 -14128966 - L1_Mur3 LINE L1 -3763 2117 1666 3 1402 1454 172 106 54 chr12 107128578 107128909 -14128621 + ORR1B1 LTR MaLR 47 394 0 3 1402 701 228 71 6 chr12 107128910 107129205 -14128325 - L1_Mur3 LINE L1 -4216 1667 1354 3 1402 327 274 110 50 chr12 107129270 107129489 -14128041 - L1_Rod LINE L1 -6352 820 589 3 1402 448 126 0 109 chr12 107130270 107130371 -14127159 - MTE2a LTR MaLR -252 122 40 2 1402 1590 32 16 11 chr12 107130823 107131013 -14126517 - B2_Mm1a SINE B2 -1 192 2 3 1402 3924 88 39 0 chr12 107131051 107131597 -14125933 + RMER2 LTR ERV1 1 567 0 3 1402 1258 99 50 0 chr12 107132193 107132374 -14125156 - B2_Mm2 SINE B2 -5 190 1 3 1402 331 399 0 6 chr12 107132781 107132960 -14124570 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 3 1402 232 308 10 0 chr12 107132985 107133089 -14124441 + (TCCA)n Simple_repeat Simple_repeat 3 107 0 3 1402 217 294 142 35 chr12 107133302 107133415 -14124115 + MIRb SINE MIR 84 208 -60 3 1402 259 360 0 53 chr12 107133531 107133625 -14123905 - MER91A DNA Tip100 -97 99 11 3 1402 1144 314 86 48 chr12 107133976 107134850 -14122680 - MMERGLN-int LTR ERV1 -3663 3893 2987 3 1402 487 312 66 27 chr12 107134977 107135234 -14122296 - MURVY-int LTR ERV1 -6030 1422 1156 3 1402 204 231 0 0 chr12 107135458 107135497 -14122033 + (CAG)n Simple_repeat Simple_repeat 3 41 0 3 1402 1587 156 237 23 chr12 107136226 107136580 -14120950 - RLTR23 LTR ERV1 0 430 1 3 1402 834 304 91 74 chr12 107137852 107138246 -14119284 + MLT1J LTR MaLR 9 409 -103 3 1402 269 360 18 0 chr12 107139520 107139634 -14117896 + LTR16C LTR ERVL 354 469 -20 3 1402 1000 236 91 8 chr12 107139636 107139901 -14117629 - MT2A LTR ERVL -2 531 245 3 1402 242 250 0 0 chr12 107139902 107139946 -14117584 + (CGG)n Simple_repeat Simple_repeat 2 45 0 3 1402 421 245 30 10 chr12 107139961 107140060 -14117470 - RSINE1 SINE B4 -63 102 2 3 1402 367 234 177 19 chr12 107140064 107140273 -14117257 + RCHARR1 DNA MER1_type 732 973 -1 3 1402 270 0 0 0 chr12 107141991 107142021 -14115509 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1402 405 0 0 0 chr12 107142025 107142070 -14115460 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1402 255 232 65 194 chr12 107142267 107142406 -14115124 - MTEb LTR MaLR -54 325 205 3 1402 707 267 103 0 chr12 107142501 107142696 -14114834 + ID_B1 SINE B4 3 217 -7 3 1402 216 0 0 0 chr12 107143950 107143974 -14113556 + (TGG)n Simple_repeat Simple_repeat 3 26 0 3 1402 803 257 143 4 chr12 107144022 107144260 -14113270 + B4 SINE B4 2 272 -20 3 1402 371 251 5 43 chr12 107144315 107144502 -14113028 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1402 1366 64 31 31 chr12 107145489 107145683 -14111847 + B2_Mm2 SINE B2 1 194 -1 3 1402 295 266 120 0 chr12 107146036 107146157 -14111373 + MER20 DNA MER1_type 36 168 -51 3 1402 688 204 238 0 chr12 107146226 107146407 -14111123 + ID_B1 SINE B4 1 224 0 3 1402 306 227 0 0 chr12 107146407 107146482 -14111048 + GA-rich Low_complexity Low_complexity 2 76 0 3 1402 200 112 0 137 chr12 107147117 107147241 -14110289 + (CCCCAG)n Simple_repeat Simple_repeat 5 111 0 3 1402 663 108 0 24 chr12 107147514 107147637 -14109893 + (TCC)n Simple_repeat Simple_repeat 2 121 0 3 1402 219 232 17 35 chr12 107147679 107147737 -14109793 + MIRc SINE MIR 91 147 -121 3 1402 328 328 23 60 chr12 107147787 107147920 -14109610 + ID_B1 SINE B4 2 129 -95 3 1402 1428 148 209 20 chr12 107147954 107148251 -14109279 + ORR1B2 LTR MaLR 1 353 -14 3 1402 513 0 0 0 chr12 107148306 107148363 -14109167 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1402 253 312 146 25 chr12 107148525 107148683 -14108847 + MLT1H LTR MaLR 2 178 -371 3 1402 494 273 180 48 chr12 107149434 107149684 -14107846 + MLT1H LTR MaLR 267 549 0 3 1402 271 264 64 0 chr12 107150860 107150967 -14106563 + B3 SINE B2 77 198 0 3 1402 1083 258 11 29 chr12 107150998 107151277 -14106253 + B4A SINE B4 1 274 -18 3 1402 294 194 0 0 chr12 107151277 107151339 -14106191 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1402 360 0 0 0 chr12 107151377 107151417 -14106113 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1402 211 323 34 107 chr12 107151826 107152003 -14105527 - MIRb SINE MIR -104 164 1 3 1402 1148 149 0 39 chr12 107152551 107152710 -14104820 + B2_Mm2 SINE B2 1 159 -36 3 1402 414 0 0 0 chr12 107152710 107152756 -14104774 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1402 1148 149 0 39 chr12 107152756 107152799 -14104731 + B2_Mm2 SINE B2 160 195 0 3 1402 302 278 35 44 chr12 107154055 107154168 -14103362 - L1MCa LINE L1 -4507 2001 1890 3 1402 315 203 0 0 chr12 107154168 107154227 -14103303 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1402 676 219 11 6 chr12 107154231 107154410 -14103120 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 3 1402 374 177 31 31 chr12 107154398 107154526 -14103004 + (CATA)n Simple_repeat Simple_repeat 3 130 0 3 1402 1491 52 0 63 chr12 107154795 107154954 -14102576 + B2_Mm1a SINE B2 2 160 -33 3 1402 387 0 0 0 chr12 107154954 107154997 -14102533 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1402 1491 52 0 63 chr12 107154997 107155042 -14102488 + B2_Mm1a SINE B2 161 193 0 3 1402 291 279 11 11 chr12 107155290 107155377 -14102153 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 1402 519 276 215 13 chr12 107155391 107155619 -14101911 - B4A SINE B4 -18 274 1 3 1402 2842 88 2 10 chr12 107156296 107156708 -14100822 + MurERV4_19-int LTR ERVK 1778 2186 -3594 3 1402 915 87 16 0 chr12 107156712 107156838 -14100692 + RMER19B LTR ERVK 771 898 -4 3 1402 299 261 41 102 chr12 107157803 107157901 -14099629 - RMER30 DNA MER1_type -8 194 103 3 1402 770 58 0 9 chr12 107157929 107158034 -14099496 + (GAA)n Simple_repeat Simple_repeat 3 106 0 3 1402 680 219 198 5 chr12 107158715 107158917 -14098613 + ORR1D1 LTR MaLR 134 374 0 3 1402 4816 200 39 55 chr12 107158917 107159353 -14098177 + ORR1D1-int LTR MaLR 1 439 -931 3 1402 270 0 0 0 chr12 107159353 107159383 -14098147 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1402 4816 200 39 55 chr12 107159383 107160028 -14097502 + ORR1D1-int LTR MaLR 440 1064 -306 3 1402 437 246 36 0 chr12 107160183 107160321 -14097209 + L1MA9 LINE L1 5791 5933 -379 3 1402 241 245 0 106 chr12 107160345 107160442 -14097088 + B4 SINE B4 2 84 -208 3 1402 770 172 0 3 chr12 107160442 107160743 -14096787 + (CA)n Simple_repeat Simple_repeat 1 299 0 3 1402 332 130 0 0 chr12 107160746 107160792 -14096738 + HAL1-3A_ME LINE L1 1976 2021 -837 3 1402 2004 164 14 25 chr12 107160801 107160910 -14096620 - ORR1D1 LTR MaLR 0 374 271 3 1402 1503 172 154 38 chr12 107160910 107161254 -14096276 + ORR1C2 LTR MaLR 1 384 0 3 1402 2004 164 14 25 chr12 107161254 107161512 -14096018 - ORR1D1 LTR MaLR -104 270 11 3 1402 278 159 14 0 chr12 107161729 107161798 -14095732 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1402 409 262 5 192 chr12 107161827 107161844 -14095686 - RSINE1 SINE B4 0 165 150 3 1402 342 0 0 0 chr12 107161844 107161882 -14095648 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1402 409 262 5 192 chr12 107161882 107162062 -14095468 - RSINE1 SINE B4 -16 149 5 3 1402 501 17 0 0 chr12 107162207 107162265 -14095265 + (CCCTG)n Simple_repeat Simple_repeat 2 59 0 3 1402 404 193 8 0 chr12 107162307 107162426 -14095104 + (CA)n Simple_repeat Simple_repeat 2 121 0 3 1402 26 0 0 0 chr12 107162430 107162456 -14095074 + AT_rich Low_complexity Low_complexity 1 26 0 3 1402 741 294 27 55 chr12 107163397 107163689 -14093841 - B4A SINE B4 -7 285 2 3 1402 2120 244 128 41 chr12 107163832 107164591 -14092939 - Lx8 LINE L1 -479 6994 6170 3 1402 21 36 0 0 chr12 107164591 107164619 -14092911 + AT_rich Low_complexity Low_complexity 1 28 0 3 1402 907 61 0 0 chr12 107164627 107164742 -14092788 + B2_Mm2 SINE B2 15 129 -66 3 1402 22 56 0 0 chr12 107164747 107164783 -14092747 + AT_rich Low_complexity Low_complexity 1 36 0 3 1402 486 100 341 4 chr12 107164838 107164950 -14092580 - B1_Mus1 SINE Alu -1 147 1 3 1402 222 37 0 0 chr12 107165093 107165120 -14092410 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1402 1215 61 0 0 chr12 107165120 107165267 -14092263 - B1_Mus1 SINE Alu 0 148 2 3 1402 469 263 55 71 chr12 107165290 107165417 -14092113 + RSINE1 SINE B4 3 127 -38 3 1402 839 200 29 12 chr12 107165486 107165658 -14091872 + B3 SINE B2 5 179 -37 3 1402 294 143 0 0 chr12 107165782 107165831 -14091699 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1402 324 0 0 0 chr12 107165969 107166005 -14091525 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1402 249 329 12 48 chr12 107166007 107166090 -14091440 - B4 SINE B4 -5 287 208 3 1402 691 192 25 0 chr12 107166103 107166238 -14091292 + B1_Mur2 SINE Alu 1 149 0 3 1402 564 231 29 98 chr12 107166252 107166425 -14091105 - B3A SINE B2 0 198 38 3 1402 383 129 81 0 chr12 107166439 107166501 -14091029 - B4 SINE B4 -224 68 2 3 1402 617 241 122 87 chr12 107167162 107167416 -14090114 + B4 SINE B4 3 265 -27 3 1402 276 276 205 44 chr12 107168290 107168495 -14089035 + ORR1E LTR MaLR 1 238 -121 3 1402 838 262 118 101 chr12 107168610 107168975 -14088555 + MTE2a LTR MaLR 9 379 0 3 1402 1692 138 163 9 chr12 107169283 107169633 -14087897 - MTC LTR MaLR 0 421 18 3 1402 910 136 14 0 chr12 107169698 107169838 -14087692 + B1_Mur4 SINE Alu 2 143 -7 3 1402 314 326 10 30 chr12 107169844 107169945 -14087585 - HAL1-2a_MD LINE L1 -616 2408 2310 3 1402 328 228 20 61 chr12 107170125 107170223 -14087307 - PB1D10 SINE Alu -22 95 2 3 1402 187 338 0 15 chr12 107170276 107170342 -14087188 + MIR SINE MIR 68 132 -76 3 1402 355 276 11 0 chr12 107171410 107171497 -14086033 - PB1D10 SINE Alu -29 88 1 3 1402 273 128 0 0 chr12 107171553 107171600 -14085930 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1402 560 332 39 14 chr12 107171601 107171681 -14085849 - B4A SINE B4 0 292 213 4 1402 872 134 21 0 chr12 107171681 107171823 -14085707 - B1_Mus2 SINE Alu -1 146 2 4 1402 560 332 39 14 chr12 107171823 107172026 -14085504 - B4A SINE B4 -80 212 2 4 1402 3275 44 2 2 chr12 107172730 107173136 -14084394 + MTB_Mm LTR MaLR 2 407 0 4 1402 180 0 0 0 chr12 107173879 107173899 -14083631 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1402 194 308 59 75 chr12 107173974 107174160 -14083370 + MIRm SINE MIR 2 184 -92 4 1402 408 147 0 0 chr12 107176161 107176236 -14081294 + (TGAA)n Simple_repeat Simple_repeat 1 75 0 4 1402 630 300 49 92 chr12 107177067 107177372 -14080158 + B4A SINE B4 1 292 0 4 1402 1003 134 6 30 chr12 107177498 107177667 -14079863 + URR1B DNA MER1_type 1 165 -60 4 1402 396 0 0 0 chr12 107177743 107177787 -14079743 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1402 351 179 0 0 chr12 107178087 107178154 -14079376 + (TAA)n Simple_repeat Simple_repeat 2 68 0 4 1402 378 325 35 59 chr12 107178237 107178440 -14079090 - MLT1D LTR MaLR -307 198 1 4 1402 459 0 0 0 chr12 107178581 107178632 -14078898 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1402 978 82 0 0 chr12 107178717 107178852 -14078678 + B1_Mm SINE Alu 13 147 0 4 1402 312 27 0 0 chr12 107179889 107179926 -14077604 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1402 1549 267 59 20 chr12 107180021 107180465 -14077065 - MT2A LTR ERVL -72 461 1 4 1402 773 267 9 40 chr12 107180465 107180689 -14076841 - B4A SINE B4 -59 233 17 4 1402 504 0 0 0 chr12 107181750 107181806 -14075724 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1402 402 21 0 0 chr12 107182194 107182241 -14075289 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1402 316 267 107 19 chr12 107182307 107182340 -14075190 - B4A SINE B4 -92 200 167 4 1402 2454 86 0 0 chr12 107182340 107182667 -14074863 + ORR1A2 LTR MaLR 1 327 0 4 1402 316 267 107 19 chr12 107182667 107182736 -14074794 - B4A SINE B4 -126 166 89 4 1402 974 113 124 6 chr12 107182741 107182910 -14074620 - B2_Mm2 SINE B2 -6 189 1 4 1402 25 31 0 0 chr12 107182914 107182946 -14074584 + AT_rich Low_complexity Low_complexity 1 32 0 4 1402 493 311 74 6 chr12 107183034 107183196 -14074334 + MLT1D LTR MaLR 254 426 -79 4 1402 547 237 8 0 chr12 107183371 107183489 -14074041 + B3A SINE B2 1 119 -79 4 1402 237 321 109 22 chr12 107183489 107183508 -14074022 + B4A SINE B4 1 149 -143 4 1402 909 299 91 32 chr12 107183579 107183952 -14073578 + MTD LTR MaLR 1 395 -24 4 1402 413 252 50 0 chr12 107183985 107184084 -14073446 - MLT1D LTR MaLR -395 110 7 4 1402 962 128 189 11 chr12 107184158 107184348 -14073182 + URR1B DNA MER1_type 1 224 -1 4 1402 575 306 75 68 chr12 107185075 107185326 -14072204 + MLT1D LTR MaLR 40 303 -202 4 1402 1354 55 44 0 chr12 107185326 107185507 -14072023 + B2_Mm1a SINE B2 2 190 -3 4 1402 575 306 75 68 chr12 107185507 107185655 -14071875 + MLT1D LTR MaLR 304 442 -63 4 1402 820 166 12 0 chr12 107186365 107186528 -14071002 + GA-rich Low_complexity Low_complexity 2 166 0 4 1402 363 211 28 0 chr12 107187029 107187100 -14070430 - PB1D7 SINE Alu -10 110 38 4 1402 3265 33 2 2 chr12 107187793 107188193 -14069337 - MTB LTR MaLR 0 400 1 4 1402 262 291 41 106 chr12 107189371 107189417 -14068113 + B4A SINE B4 52 102 -190 4 1402 1434 32 48 5 chr12 107189417 107189604 -14067926 + B2_Mm2 SINE B2 1 195 0 4 1402 262 291 41 106 chr12 107189604 107189680 -14067850 + B4A SINE B4 103 166 -126 4 1402 1195 67 83 11 chr12 107189713 107189893 -14067637 + B2_Mm2 SINE B2 1 193 -2 4 1402 740 209 0 0 chr12 107189921 107190055 -14067475 + B1_Mur1 SINE Alu 5 138 -11 4 1402 597 64 0 0 chr12 107190055 107190133 -14067397 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 4 1402 706 279 109 75 chr12 107190403 107190751 -14066779 + MTEa LTR MaLR 3 362 -17 4 1402 195 69 0 0 chr12 107191085 107191114 -14066416 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1402 398 310 64 0 chr12 107191136 107191307 -14066223 + B3A SINE B2 2 183 -15 4 1402 1291 40 0 44 chr12 107191346 107191506 -14066024 + B2_Mm1t SINE B2 1 160 -33 4 1402 279 0 0 0 chr12 107191506 107191537 -14065993 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 1402 1291 40 0 44 chr12 107191537 107191558 -14065972 + B2_Mm1t SINE B2 161 174 -19 4 1402 186 43 0 0 chr12 107192493 107192516 -14065014 + (CCCTG)n Simple_repeat Simple_repeat 1 23 0 4 1402 497 266 62 17 chr12 107192672 107192848 -14064682 - MLT1C LTR MaLR 0 467 284 4 1402 751 239 50 20 chr12 107193177 107193378 -14064152 - B4 SINE B4 -11 281 75 4 1402 739 298 23 5 chr12 107193444 107193660 -14063870 - ID_B1 SINE B4 -4 220 1 4 1402 233 312 8 53 chr12 107193744 107193876 -14063654 + L1M5 LINE L1 5605 5730 -394 4 1402 412 224 18 45 chr12 107194250 107194362 -14063168 + AmnSINE1 SINE SINE 259 367 -208 4 1402 267 31 0 0 chr12 107194979 107195011 -14062519 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1402 978 135 0 17 chr12 107195086 107195267 -14062263 + CT-rich Low_complexity Low_complexity 3 180 0 4 1402 413 191 26 9 chr12 107195287 107195403 -14062127 + CT-rich Low_complexity Low_complexity 3 120 0 4 1402 300 299 207 7 chr12 107195406 107195541 -14061989 - HAL1-3A_ME LINE L1 -659 2199 2038 4 1402 1136 62 0 14 chr12 107195561 107195708 -14061822 - B1_Mus2 SINE Alu -1 146 2 4 1402 515 191 86 0 chr12 107195759 107195864 -14061666 - B1_Mur4 SINE Alu -36 114 1 4 1402 282 56 0 0 chr12 107196745 107196781 -14060749 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1402 574 338 0 0 chr12 107196783 107196934 -14060596 - RSINE1 SINE B4 -10 155 5 4 1402 713 158 4 0 chr12 107197642 107197921 -14059609 + (CA)n Simple_repeat Simple_repeat 1 280 0 4 1402 411 21 0 0 chr12 107199659 107199707 -14057823 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1402 228 67 0 0 chr12 107200614 107200644 -14056886 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1402 243 0 0 0 chr12 107200699 107200726 -14056804 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1402 331 267 94 22 chr12 107201940 107202078 -14055452 + L1M5 LINE L1 5563 5710 -414 4 1402 273 159 0 0 chr12 107202101 107202145 -14055385 + RSINE1 SINE B4 86 129 -36 4 1402 22 35 0 0 chr12 107202184 107202213 -14055317 + AT_rich Low_complexity Low_complexity 1 29 0 4 1402 315 0 0 0 chr12 107202702 107202737 -14054793 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 4 1402 480 297 24 48 chr12 107202747 107202862 -14054668 - RSINE1 SINE B4 0 165 53 4 1402 2821 139 101 9 chr12 107202862 107202895 -14054635 + RMER4B LTR ERVK 1 33 -552 4 1402 189 0 0 0 chr12 107202895 107202916 -14054614 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1402 2821 139 101 9 chr12 107202916 107203418 -14054112 + RMER4B LTR ERVK 34 584 -1 4 1402 480 297 24 48 chr12 107203418 107203468 -14054062 - RSINE1 SINE B4 -113 52 4 4 1402 256 326 42 10 chr12 107204131 107204227 -14053303 + MER63B DNA AcHobo 330 428 -8 4 1402 841 176 18 1 chr12 107204604 107204779 -14052751 + B3 SINE B2 1 187 -6 4 1402 550 204 136 0 chr12 107206544 107206676 -14050854 - B1_Mur4 SINE Alu 0 150 1 4 1402 214 185 56 0 chr12 107206811 107206865 -14050665 + A-rich Low_complexity Low_complexity 2 58 0 4 1402 352 179 0 0 chr12 107206880 107206950 -14050580 - ORR1D2 LTR MaLR -287 72 3 4 1402 261 75 0 0 chr12 107207607 107207647 -14049883 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1402 886 232 32 131 chr12 107208031 107208131 -14049399 - B4 SINE B4 0 292 217 4 1402 267 31 0 0 chr12 107208131 107208163 -14049367 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1402 886 232 32 131 chr12 107208163 107208375 -14049155 - B4 SINE B4 -76 216 11 4 1402 386 93 0 0 chr12 107208410 107208464 -14049066 - ORR1A2 LTR MaLR -1 325 272 4 1402 897 16 0 124 chr12 107208481 107208626 -14048904 - B1_Mus2 SINE Alu 0 147 21 4 1402 1890 89 3 66 chr12 107208621 107208922 -14048608 - ORR1A2 LTR MaLR -43 284 3 4 1402 460 300 85 62 chr12 107209023 107209447 -14048083 + Charlie14a DNA MER1_type 162 410 -754 4 1402 1176 234 76 111 chr12 107210204 107210584 -14046946 + MTEb LTR MaLR 1 367 -12 4 1402 523 308 52 19 chr12 107210983 107211195 -14046335 + MLT1J2 LTR MaLR 2 220 -228 4 1402 468 51 0 0 chr12 107211811 107211870 -14045660 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 4 1402 881 9 9 0 chr12 107212277 107212383 -14045147 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 1402 934 154 0 0 chr12 107212942 107213085 -14044445 - B1_Mur2 SINE Alu -6 143 1 4 1402 363 361 81 19 chr12 107214104 107214375 -14043155 - B4A SINE B4 -3 289 2 4 1402 252 353 74 15 chr12 107214438 107214573 -14042957 - MLT1K LTR MaLR -92 503 361 4 1402 446 255 198 6 chr12 107214729 107214891 -14042639 + RMER30 DNA MER1_type 7 199 -3 4 1402 1244 94 6 0 chr12 107215468 107215648 -14041882 + B2_Mm2 SINE B2 1 181 -14 4 1402 227 0 91 0 chr12 107215666 107215699 -14041831 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1402 941 254 38 0 chr12 107215723 107215932 -14041598 + ID_B1 SINE B4 7 223 -1 4 1402 23 0 0 0 chr12 107215933 107215956 -14041574 + AT_rich Low_complexity Low_complexity 1 23 0 4 1402 1352 68 0 6 chr12 107216055 107216233 -14041297 - B2_Mm2 SINE B2 -18 177 1 4 1402 1095 69 0 0 chr12 107216253 107216397 -14041133 - B1_Mus1 SINE Alu 0 148 5 4 1402 846 147 25 18 chr12 107216487 107216767 -14040763 + (TCCA)n Simple_repeat Simple_repeat 1 281 0 4 175 493 213 30 0 chr12 107216784 107216953 -14040577 + (TCCA)n Simple_repeat Simple_repeat 1 174 0 4 1403 201 311 21 56 chr12 107218039 107218182 -14039348 + (TGGA)n Simple_repeat Simple_repeat 3 140 0 4 1403 202 307 19 47 chr12 107218071 107218177 -14039353 + (TGGG)n Simple_repeat Simple_repeat 1 103 0 4 1403 203 374 60 22 chr12 107218392 107218575 -14038955 - L2b LINE L2 -216 3159 2970 4 1403 270 279 0 95 chr12 107218704 107218799 -14038731 + MTEa LTR MaLR 3 88 -291 4 1403 270 0 0 0 chr12 107219125 107219155 -14038375 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 1403 426 312 24 0 chr12 107219755 107219880 -14037650 - MLT1J LTR MaLR -322 190 63 4 1403 312 306 0 0 chr12 107219881 107219989 -14037541 + G-rich Low_complexity Low_complexity 1 108 0 4 1403 262 272 22 0 chr12 107220101 107220193 -14037337 + MTEa LTR MaLR 88 181 -178 4 1403 425 50 17 0 chr12 107220209 107220269 -14037261 + (CCA)n Simple_repeat Simple_repeat 2 62 0 5 1403 438 282 0 61 chr12 107220355 107220487 -14037043 + MTEa LTR MaLR 248 371 -8 4 1403 476 271 101 50 chr12 107221508 107221706 -14035824 - ID_B1 SINE B4 -15 209 2 5 1403 933 207 81 0 chr12 107221812 107222010 -14035520 - B3 SINE B2 0 216 3 5 1403 221 309 131 0 chr12 107222023 107222107 -14035423 + L2a LINE L2 3005 3099 -327 5 1403 225 119 0 0 chr12 107222310 107222352 -14035178 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 5 1403 1125 96 0 0 chr12 107222658 107222804 -14034726 - B1_Mus2 SINE Alu -1 146 1 5 1403 1354 75 40 0 chr12 107223406 107223579 -14033951 + B2_Mm2 SINE B2 1 180 -15 5 1403 553 249 204 28 chr12 107223594 107223805 -14033725 - MLT1A0 LTR MaLR -117 248 1 5 1403 286 262 0 0 chr12 107223832 107223893 -14033637 - ID_B1 SINE B4 -9 215 155 5 1403 326 262 45 36 chr12 107224140 107224251 -14033279 + MER2 DNA MER2_type 59 170 -175 5 1403 514 198 37 28 chr12 107224528 107224637 -14032893 + B3A SINE B2 28 137 -61 5 1403 260 290 0 0 chr12 107225220 107225289 -14032241 + G-rich Low_complexity Low_complexity 5 73 0 5 1403 371 288 167 0 chr12 107226940 107227072 -14030458 - MLT1B LTR MaLR -150 240 87 5 1403 1212 232 112 37 chr12 107227114 107227622 -14029908 - RMER4B LTR ERVK 0 585 1 5 1403 1013 317 46 0 chr12 107227622 107227947 -14029583 + MTEa LTR MaLR 33 372 -7 5 1403 260 330 4 193 chr12 107228182 107228441 -14029089 - MLT1B LTR MaLR -53 337 128 5 1403 502 239 66 42 chr12 107228762 107228928 -14028602 - L1MB3 LINE L1 -7 6176 6007 5 1403 318 332 101 26 chr12 107228976 107229165 -14028365 - MLT1G LTR MaLR -18 573 371 5 1403 209 329 14 14 chr12 107229462 107229533 -14027997 + L2c LINE L2 3253 3323 -64 5 1403 344 312 9 18 chr12 107229609 107229723 -14027807 + MLT1G LTR MaLR 479 591 0 5 1403 293 109 0 18 chr12 107229975 107230031 -14027499 + (AGGGGG)n Simple_repeat Simple_repeat 2 56 0 5 1403 441 0 0 0 chr12 107231234 107231283 -14026247 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1403 267 337 81 92 chr12 107231543 107231814 -14025716 - MLT1G LTR MaLR -180 415 148 5 1403 449 223 19 0 chr12 107231857 107231961 -14025569 + MTC LTR MaLR 1 113 -306 5 1403 880 285 67 19 chr12 107232149 107232417 -14025113 + B4 SINE B4 5 285 -7 5 1403 333 118 0 0 chr12 107232421 107232472 -14025058 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1403 981 302 112 70 chr12 107232819 107233531 -14023999 + RMER13A LTR ERVK 2 743 -117 5 1403 1320 271 58 56 chr12 107233688 107233777 -14023753 - RMER5 LTR ERV1 -36 498 416 5 1403 517 222 121 148 chr12 107233777 107234231 -14023299 - RMER10A LTR ERVL 0 442 1 5 1403 1320 271 58 56 chr12 107234231 107234638 -14022892 - RMER5 LTR ERV1 -119 415 1 5 1403 1012 67 0 29 chr12 107234941 107235067 -14022463 + B1_Mus1 SINE Alu 14 138 -10 5 1403 225 0 0 0 chr12 107235067 107235092 -14022438 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 1403 1012 67 0 29 chr12 107235092 107235104 -14022426 + B1_Mus1 SINE Alu 139 148 0 5 1403 650 108 61 48 chr12 107235099 107235243 -14022287 + URR1B DNA MER1_type 76 225 0 5 1403 182 37 37 0 chr12 107235431 107235458 -14022072 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1403 199 235 78 0 chr12 107235791 107235842 -14021688 - L2b LINE L2 0 3375 3321 5 1403 189 0 0 0 chr12 107235979 107236000 -14021530 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1403 211 132 146 36 chr12 107236000 107236046 -14021484 - BC1_Mm scRNA scRNA -63 89 36 5 1403 532 45 0 0 chr12 107236140 107236206 -14021324 - B1_Mm SINE Alu 0 147 82 5 1403 847 155 53 12 chr12 107236219 107236237 -14021293 - B2_Mm2 SINE B2 -18 177 159 5 1403 185 0 40 0 chr12 107236237 107236262 -14021268 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 1403 847 155 53 12 chr12 107236262 107236413 -14021117 - B2_Mm2 SINE B2 -37 158 2 5 1403 1786 207 17 6 chr12 107236423 107236778 -14020752 + MTD LTR MaLR 60 418 -1 5 1403 1338 95 0 45 chr12 107237093 107237291 -14020239 + B2_Mm2 SINE B2 3 191 -4 5 1403 198 0 0 0 chr12 107237323 107237345 -14020185 + (GA)n Simple_repeat Simple_repeat 1 22 0 5 1403 246 232 18 0 chr12 107237567 107237623 -14019907 + CT-rich Low_complexity Low_complexity 5 61 0 5 1403 478 286 131 15 chr12 107237639 107237732 -14019798 - L1MCa LINE L1 -4690 1818 1711 5 1403 217 0 61 0 chr12 107237732 107237765 -14019765 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5 1403 478 286 131 15 chr12 107237765 107237870 -14019660 - L1MCa LINE L1 -4798 1710 1598 5 1403 240 259 17 0 chr12 107237879 107237937 -14019593 + CT-rich Low_complexity Low_complexity 2 60 0 5 1403 323 45 0 22 chr12 107238481 107238527 -14019003 + (TATG)n Simple_repeat Simple_repeat 2 46 0 5 1403 874 295 26 15 chr12 107238529 107238794 -14018736 - B4 SINE B4 -23 269 2 5 1403 237 291 80 18 chr12 107238795 107238907 -14018623 + Tigger7 DNA MER2_type 2102 2220 -271 5 1403 1317 73 0 0 chr12 107238915 107239093 -14018437 + (CACCT)n Simple_repeat Simple_repeat 1 178 0 5 1403 369 0 0 0 chr12 107239162 107239203 -14018327 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1403 227 138 35 0 chr12 107240316 107240374 -14017156 + (TCTCTG)n Simple_repeat Simple_repeat 2 61 0 5 1403 299 304 37 0 chr12 107240386 107240486 -14017044 - PB1D7 SINE Alu -16 104 2 5 1403 1197 280 106 17 chr12 107240991 107241340 -14016190 - MLT1B LTR MaLR -3 387 8 5 1403 1230 187 136 0 chr12 107241545 107241796 -14015734 + MTD LTR MaLR 53 337 -82 5 1403 366 331 104 11 chr12 107242324 107242507 -14015023 + MIRc SINE MIR 27 226 -42 5 1403 340 307 53 41 chr12 107243346 107243516 -14014014 - MER104 DNA Tc2 -4 177 6 5 1403 713 258 0 6 chr12 107243518 107243674 -14013856 + RSINE1 SINE B4 3 157 -8 5 1403 183 129 0 0 chr12 107243674 107243705 -14013825 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 5 1403 1461 211 86 20 chr12 107244453 107244801 -14012729 - MTE2a LTR MaLR 0 379 9 5 1403 1250 35 0 0 chr12 107244973 107245118 -14012412 - B1_Mm SINE Alu 0 147 3 5 1403 885 136 34 56 chr12 107245689 107245868 -14011662 - RMER17C LTR ERVK -235 175 1 5 1403 600 158 192 0 chr12 107246349 107246469 -14011061 - B1_Mur2 SINE Alu -5 144 2 5 1403 1090 86 0 0 chr12 107247678 107247817 -14009713 + B1_Mus2 SINE Alu 1 139 -8 5 1403 216 97 0 0 chr12 107247830 107247861 -14009669 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1403 191 259 69 0 chr12 107249157 107249215 -14008315 - L3 LINE CR1 -1339 3150 3089 5 1403 266 152 17 0 chr12 107249329 107249388 -14008142 + CT-rich Low_complexity Low_complexity 2 61 0 5 1403 781 109 78 21 chr12 107249388 107249529 -14008001 - B1_Mur4 SINE Alu -1 149 1 5 1403 1137 30 8 0 chr12 107250196 107250329 -14007201 - B1_Mm SINE Alu -13 134 1 5 1403 21 57 0 0 chr12 107250404 107250439 -14007091 + AT_rich Low_complexity Low_complexity 1 35 0 5 1403 297 0 0 0 chr12 107250656 107250689 -14006841 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1403 1270 91 26 26 chr12 107250731 107250922 -14006608 - B2_Mm2 SINE B2 -3 192 2 5 1403 842 163 14 7 chr12 107250925 107251073 -14006457 - B1_Mur4 SINE Alu -1 149 1 5 1403 341 291 77 10 chr12 107251468 107251572 -14005958 - B1F SINE Alu -8 141 31 5 1403 369 0 0 0 chr12 107251576 107251617 -14005913 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1403 568 182 55 55 chr12 107251961 107252089 -14005441 + B1_Mur2 SINE Alu 21 148 -1 5 1403 211 279 0 0 chr12 107252773 107252816 -14004714 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1403 230 211 0 0 chr12 107252989 107253027 -14004503 + C-rich Low_complexity Low_complexity 1 38 0 5 1403 24 0 0 0 chr12 107253127 107253151 -14004379 + AT_rich Low_complexity Low_complexity 1 24 0 5 1403 316 263 52 105 chr12 107253153 107253224 -14004306 + L1MCa LINE L1 1818 1882 -4626 5 1403 1105 67 0 0 chr12 107253224 107253359 -14004171 + B1_Mus1 SINE Alu 1 135 -13 5 1403 316 263 52 105 chr12 107253359 107253440 -14004090 + L1MCa LINE L1 1883 1962 -4546 5 1403 272 49 49 0 chr12 107253442 107253483 -14004047 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 1403 578 307 25 5 chr12 107253520 107253723 -14003807 + L1MD LINE L1 5536 5742 -500 5 1403 508 135 173 53 chr12 107253905 107254038 -14003492 - B1_Mur3 SINE Alu 0 149 1 5 1403 309 250 54 0 chr12 107254329 107254421 -14003109 - RSINE1 SINE B4 -12 153 57 5 1403 363 274 61 53 chr12 107254642 107254773 -14002757 - L1MD LINE L1 -651 5708 5577 5 1403 1116 82 14 0 chr12 107254774 107254920 -14002610 + B1_Mus1 SINE Alu 1 148 0 5 1403 811 288 107 30 chr12 107255073 107255539 -14001991 - L1MD LINE L1 -765 5381 4880 5 1403 2892 84 9 48 chr12 107256266 107256703 -14000827 + BGLII_Mus LTR ERVK 1 420 -2 5 1403 23 0 0 0 chr12 107259104 107259127 -13998403 + AT_rich Low_complexity Low_complexity 1 23 0 5 1403 216 322 17 0 chr12 107259428 107259487 -13998043 - L3 LINE CR1 -261 4228 4169 5 1403 265 307 0 0 chr12 107260584 107260659 -13996871 - ID4 SINE ID -7 76 2 5 1403 318 221 195 34 chr12 107260970 107261148 -13996382 - L1M4 LINE L1 -472 5690 5482 5 1403 316 307 0 0 chr12 107261163 107261238 -13996292 - PB1D7 SINE Alu -2 118 44 5 1403 554 229 49 28 chr12 107262287 107262431 -13995099 - B1_Mur1 SINE Alu -1 148 2 5 1403 2873 99 0 45 chr12 107262554 107262996 -13994534 + BGLII_Mus LTR ERVK 1 422 0 5 1403 242 274 71 31 chr12 107263201 107263299 -13994231 + L1MC5 LINE L1 6706 6807 -1154 5 1403 599 284 41 6 chr12 107263394 107263564 -13993966 + RMER30 DNA MER1_type 18 193 -9 5 1403 355 289 118 87 chr12 107264385 107264673 -13992857 - L1M4 LINE L1 -824 5322 5026 5 1403 534 31 0 0 chr12 107265369 107265433 -13992097 + (TTCTC)n Simple_repeat Simple_repeat 3 66 0 5 1403 952 110 29 0 chr12 107265435 107265571 -13991959 - B1_Mus1 SINE Alu -6 142 3 5 1403 489 34 0 0 chr12 107265943 107266002 -13991528 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1403 531 0 0 0 chr12 107266053 107266112 -13991418 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1403 709 177 85 0 chr12 107266161 107266291 -13991239 - B1_Mur3 SINE Alu -8 141 1 6 1403 1136 71 45 0 chr12 107266305 107266459 -13991071 - B2_Mm2 SINE B2 -1 194 34 6 1403 3667 214 116 21 chr12 107266517 107268104 -13989426 - Lx7 LINE L1 -266 7430 5650 6 1403 468 318 141 0 chr12 107270541 107270783 -13986747 - B4 SINE B4 -6 286 11 6 1403 234 372 0 26 chr12 107270938 107271054 -13986476 - ID_B1 SINE B4 -4 220 108 6 1403 276 294 40 13 chr12 107271054 107271070 -13986460 - PB1D10 SINE Alu -4 144 14 6 1403 613 351 94 27 chr12 107271172 107271652 -13985878 - MER44B DNA MER2_type 0 550 39 6 1403 888 189 289 13 chr12 107272917 107273312 -13984218 - MT2A LTR ERVL -29 504 1 6 1403 668 263 77 11 chr12 107273428 107273609 -13983921 + B3A SINE B2 6 198 0 6 1403 709 212 93 6 chr12 107273610 107273771 -13983759 - B3 SINE B2 -36 180 6 6 1403 1436 69 27 0 chr12 107274963 107274990 -13982540 - B2_Mm1t SINE B2 0 193 162 6 1403 315 0 0 0 chr12 107274990 107275025 -13982505 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 6 1403 1436 69 27 0 chr12 107275025 107275185 -13982345 - B2_Mm1t SINE B2 -32 161 2 6 1403 2886 35 3 25 chr12 107275253 107275606 -13981924 - ORR1A1 LTR MaLR 0 346 2 6 1403 326 136 0 0 chr12 107276036 107276080 -13981450 + B1_Mus1 SINE Alu 6 49 -99 6 1403 1548 136 304 31 chr12 107276080 107276494 -13981036 - RLTR11A2 LTR ERVK 0 527 1 6 1403 366 122 240 13 chr12 107276497 107276572 -13980958 + B1_Mur4 SINE Alu 59 150 0 6 1403 445 188 69 0 chr12 107276624 107276725 -13980805 + PB1D9 SINE Alu 5 112 -8 6 1403 702 111 0 0 chr12 107276977 107277076 -13980454 - B2_Mm2 SINE B2 -93 102 4 6 1403 339 321 37 0 chr12 107277108 107277217 -13980313 - PB1D9 SINE Alu -6 114 2 6 1403 22 0 0 0 chr12 107277222 107277244 -13980286 + AT_rich Low_complexity Low_complexity 1 22 0 6 1403 698 230 15 0 chr12 107277250 107277385 -13980145 - B3 SINE B2 -78 138 2 6 1403 217 272 272 0 chr12 107277580 107277694 -13979836 + MER5A DNA MER1_type 42 186 -3 6 1403 183 326 79 29 chr12 107279157 107279296 -13978234 + L2 LINE L2 2172 2317 -1102 6 1403 671 296 56 56 chr12 107279485 107279804 -13977726 - ORR1E LTR MaLR -40 319 1 6 1403 381 43 0 0 chr12 107281406 107281453 -13976077 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1403 1012 159 66 10 chr12 107281882 107282079 -13975451 - B3 SINE B2 -6 210 3 6 1403 2049 105 3 0 chr12 107282424 107282709 -13974821 - MTB LTR MaLR -113 287 2 6 1403 877 147 0 7 chr12 107282723 107282860 -13974670 - B1_Mur4 SINE Alu -9 141 6 6 1403 621 242 23 45 chr12 107282860 107282906 -13974624 - ID_B1 SINE B4 -9 215 36 6 1403 3007 30 0 6 chr12 107283042 107283407 -13974123 - ORR1A1-int LTR MaLR -1275 517 155 6 1403 1036 53 0 0 chr12 107283404 107283535 -13973995 + B1_Mus1 SINE Alu 18 148 0 6 1403 433 311 53 117 chr12 107283603 107284006 -13973524 - L1MD LINE L1 -2212 5573 5178 6 1403 354 300 137 85 chr12 107283986 107284256 -13973274 - L1MD LINE L1 -2208 3938 3655 6 1403 351 0 0 0 chr12 107284769 107284808 -13972722 + (CCCTG)n Simple_repeat Simple_repeat 5 43 0 6 1403 396 0 0 0 chr12 107285645 107285689 -13971841 + (CGTG)n Simple_repeat Simple_repeat 3 46 0 6 1403 195 254 62 16 chr12 107286033 107286097 -13971433 - MER5B DNA MER1_type -108 70 4 6 1403 219 288 0 0 chr12 107286514 107286653 -13970877 + (CA)n Simple_repeat Simple_repeat 1 139 0 6 1403 419 164 15 0 chr12 107286653 107286720 -13970810 + HAL1-3A_ME LINE L1 1976 2043 -815 6 1403 2232 93 19 9 chr12 107291141 107291457 -13966073 - ORR1A4 LTR MaLR -10 319 1 6 1403 209 125 0 94 chr12 107292213 107292230 -13965300 + A-rich Low_complexity Low_complexity 2 15 0 6 1403 1231 55 0 0 chr12 107292230 107292376 -13965154 + B1_Mus2 SINE Alu 2 147 0 6 1403 209 125 0 94 chr12 107292376 107292411 -13965119 + A-rich Low_complexity Low_complexity 16 49 0 6 1403 1956 138 133 16 chr12 107292474 107292851 -13964679 + MTC LTR MaLR 1 421 0 6 1403 207 69 0 0 chr12 107295337 107295366 -13962164 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1403 330 218 0 124 chr12 107295780 107295869 -13961661 + ID SINE ID 1 78 -146 6 1403 476 179 0 28 chr12 107296964 107296980 -13960550 - RMER1B Other Other -4 1062 1048 6 1403 1585 27 16 0 chr12 107296980 107297165 -13960365 + B2_Mm1a SINE B2 1 188 -5 6 1403 476 179 0 28 chr12 107297165 107297257 -13960273 - RMER1B Other Other -19 1047 957 6 1403 872 173 25 0 chr12 107297271 107297433 -13960097 - RMER1B Other Other -280 786 621 6 1403 586 140 0 0 chr12 107297437 107297530 -13960000 - RMER1A Other Other -896 134 42 6 1403 27 0 0 0 chr12 107297606 107297633 -13959897 + AT_rich Low_complexity Low_complexity 1 27 0 6 1403 808 207 41 0 chr12 107298916 107299085 -13958445 - B3 SINE B2 -12 204 29 6 1403 351 317 200 19 chr12 107299165 107299480 -13958050 - L1M4 LINE L1 -1536 4610 4239 6 1403 207 188 0 0 chr12 107299508 107299556 -13957974 + CT-rich Low_complexity Low_complexity 4 51 0 6 1403 287 326 12 0 chr12 107299573 107299659 -13957871 - PB1D10 SINE Alu -26 91 5 6 1403 237 108 0 0 chr12 107299785 107299822 -13957708 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1403 1220 48 7 0 chr12 107299822 107299969 -13957561 - B1_Mus1 SINE Alu 0 148 1 6 1403 1007 116 0 0 chr12 107301383 107301530 -13956000 - B1_Mus2 SINE Alu 0 147 1 6 1403 1287 20 0 0 chr12 107303213 107303359 -13954171 + B1_Mus2 SINE Alu 2 147 0 6 1403 338 317 0 28 chr12 107303457 107303564 -13953966 + MER5B DNA MER1_type 75 178 0 6 1403 234 324 21 57 chr12 107304829 107304962 -13952568 + RSINE1 SINE B4 33 163 -2 6 1403 312 83 0 0 chr12 107304989 107305037 -13952493 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1403 687 211 49 14 chr12 107310267 107310411 -13947119 - B1_Mur3 SINE Alu 0 149 1 6 1403 760 196 35 0 chr12 107310478 107310621 -13946909 - B1_Mur1 SINE Alu 0 149 2 6 1403 392 318 42 78 chr12 107310621 107310641 -13946889 - B4 SINE B4 -63 225 69 6 1403 222 264 94 52 chr12 107313613 107313709 -13943821 - L2c LINE L2 -6 3381 3282 6 1403 186 118 0 0 chr12 107313857 107313891 -13943639 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 6 1403 22 0 0 0 chr12 107314842 107314864 -13942666 + AT_rich Low_complexity Low_complexity 1 22 0 6 1403 509 252 178 80 chr12 107315609 107315640 -13941890 - ID_B1 SINE B4 -47 245 215 6 1403 186 43 0 0 chr12 107315640 107315663 -13941867 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1403 846 74 66 0 chr12 107315663 107315784 -13941746 - B1_Mus1 SINE Alu -10 138 10 6 1403 509 241 52 32 chr12 107315784 107315800 -13941730 - ID_B1 SINE B4 -75 217 78 6 1403 304 320 78 29 chr12 107315844 107316050 -13941480 - L1M5 LINE L1 -313 5811 5596 6 1403 21 0 0 0 chr12 107316552 107316573 -13940957 + AT_rich Low_complexity Low_complexity 1 21 0 6 1403 297 100 0 0 chr12 107316721 107316771 -13940759 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1403 401 158 244 42 chr12 107317023 107317142 -13940388 + RSINE1 SINE B4 4 146 -19 6 1403 435 262 27 36 chr12 107317650 107317761 -13939769 + B3 SINE B2 103 212 -4 6 1403 216 158 0 0 chr12 107318553 107318591 -13938939 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1403 28 0 0 0 chr12 107319055 107319083 -13938447 + AT_rich Low_complexity Low_complexity 1 28 0 6 1403 306 125 0 0 chr12 107319934 107319982 -13937548 + (T)n Simple_repeat Simple_repeat 1 48 0 6 1403 183 80 0 0 chr12 107321251 107321276 -13936254 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1403 351 143 42 14 chr12 107321555 107321626 -13935904 + tRNA-Val-GTA tRNA tRNA 1 73 -3 6 1403 817 201 0 7 chr12 107321696 107321846 -13935684 + B1_Mur2 SINE Alu 1 149 0 6 1403 412 248 117 38 chr12 107322382 107322621 -13934909 - HAL1 LINE L1 -724 1783 1526 6 1403 5111 53 0 6 chr12 107322949 107323576 -13933954 - L1_Mus1 LINE L1 0 6567 5945 6 1403 237 83 0 0 chr12 107323699 107323735 -13933795 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1403 415 224 113 75 chr12 107323736 107323895 -13933635 - RSINE1 SINE B4 0 165 1 6 1403 292 233 88 11 chr12 107324574 107324665 -13932865 - L1MD LINE L1 -1275 4871 4774 6 1403 536 271 72 116 chr12 107324705 107324895 -13932635 + B4 SINE B4 48 212 -80 6 1403 396 0 0 0 chr12 107324895 107324939 -13932591 + (CAAT)n Simple_repeat Simple_repeat 4 47 0 6 1403 536 271 72 116 chr12 107324939 107324998 -13932532 + B4 SINE B4 213 285 -7 6 1403 386 304 154 13 chr12 107325038 107325398 -13932132 - L1MD LINE L1 -1430 4716 4306 6 1403 372 239 52 10 chr12 107325410 107325510 -13932020 + PB1D10 SINE Alu 9 127 0 6 1403 206 280 0 0 chr12 107325524 107325574 -13931956 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1403 271 274 37 45 chr12 107326191 107326325 -13931205 - HAL1 LINE L1 -861 1646 1514 6 1403 189 0 0 0 chr12 107326871 107326892 -13930638 + (TTG)n Simple_repeat Simple_repeat 2 22 0 6 1403 341 131 16 0 chr12 107328454 107328515 -13929015 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1403 1370 81 5 16 chr12 107329207 107329396 -13928134 + B2_Mm2 SINE B2 1 187 -8 6 1403 329 0 24 0 chr12 107330364 107330405 -13927125 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1403 966 266 55 69 chr12 107331481 107331877 -13925653 - MTE2a LTR MaLR -25 394 18 6 1403 235 301 22 14 chr12 107331965 107332103 -13925427 - L1M LINE L1 -797 5397 5259 6 1403 270 0 0 0 chr12 107332125 107332155 -13925375 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1403 305 298 95 16 chr12 107332173 107332299 -13925231 - B4A SINE B4 -155 137 2 6 1403 183 100 0 0 chr12 107332691 107332721 -13924809 + (C)n Simple_repeat Simple_repeat 1 30 0 6 1403 197 33 33 0 chr12 107333912 107333942 -13923588 + (TGGG)n Simple_repeat Simple_repeat 3 33 0 6 1403 428 263 74 55 chr12 107334188 107334405 -13923125 + MLT1B LTR MaLR 170 390 0 6 1403 715 257 178 8 chr12 107334431 107334678 -13922852 - B4 SINE B4 -3 289 1 6 1403 315 233 76 19 chr12 107335590 107335695 -13921835 + MIRb SINE MIR 88 198 -70 7 1403 427 279 129 44 chr12 107335903 107336151 -13921379 - B4 SINE B4 -22 270 2 7 1403 229 295 0 0 chr12 107336159 107336220 -13921310 - L2b LINE L2 -6 3369 3309 7 1403 567 257 14 29 chr12 107336341 107336481 -13921049 + RSINE1 SINE B4 11 148 -17 7 1403 405 0 0 0 chr12 107336517 107336562 -13920968 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 1403 279 0 0 0 chr12 107336562 107336592 -13920938 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1403 407 275 16 16 chr12 107337087 107337209 -13920321 - ORR1E LTR MaLR -16 363 242 7 1403 544 273 46 135 chr12 107337314 107337551 -13919979 - ORR1E LTR MaLR -119 240 25 7 1403 265 271 0 0 chr12 107338306 107338376 -13919154 + G-rich Low_complexity Low_complexity 1 70 0 7 1403 286 312 43 35 chr12 107338377 107338493 -13919037 + MLT1C LTR MaLR 299 415 -52 7 1403 313 287 75 30 chr12 107339511 107339644 -13917886 - MER119 DNA MER1_type -33 550 412 7 1403 294 315 0 0 chr12 107339806 107339879 -13917651 - ID4_ SINE ID -10 73 1 7 1403 311 0 26 0 chr12 107339951 107339990 -13917540 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1403 712 238 31 16 chr12 107340096 107340288 -13917242 + B3A SINE B2 1 195 -3 7 1403 770 217 68 6 chr12 107340304 107340480 -13917050 + B3 SINE B2 2 188 -28 7 1403 381 316 125 35 chr12 107340530 107340730 -13916800 - MER2 DNA MER2_type -14 331 114 7 1403 845 131 17 11 chr12 107342267 107342626 -13914904 + (TG)n Simple_repeat Simple_repeat 1 361 0 7 1403 231 265 0 0 chr12 107342644 107342693 -13914837 - RSINE1 SINE B4 -114 51 3 7 1403 2495 84 14 115 chr12 107342746 107343191 -13914339 + MTB LTR MaLR 1 400 0 7 1403 490 214 67 0 chr12 107344264 107344594 -13912936 + (TCCA)n Simple_repeat Simple_repeat 1 352 0 7 1403 1063 141 9 0 chr12 107344621 107344857 -13912673 + (CCCA)n Simple_repeat Simple_repeat 1 238 0 7 1403 306 125 0 0 chr12 107344857 107344905 -13912625 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 7 1403 185 0 40 0 chr12 107345493 107345518 -13912012 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1403 21 57 0 0 chr12 107345875 107345910 -13911620 + AT_rich Low_complexity Low_complexity 1 35 0 7 1403 495 121 30 0 chr12 107347130 107347229 -13910301 + (TCCA)n Simple_repeat Simple_repeat 2 103 0 7 1403 282 29 0 0 chr12 107347882 107347917 -13909613 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1404 590 194 0 11 chr12 107349399 107349581 -13907949 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1404 570 217 2 0 chr12 107349596 107350125 -13907405 + (TG)n Simple_repeat Simple_repeat 1 530 0 7 1404 540 218 3 0 chr12 107350146 107350545 -13906985 + (TG)n Simple_repeat Simple_repeat 1 400 0 7 1404 474 18 0 0 chr12 107350984 107351039 -13906491 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1404 252 0 0 0 chr12 107351488 107351516 -13906014 + (CTTTG)n Simple_repeat Simple_repeat 1 28 0 7 1404 1096 191 5 32 chr12 107353536 107353752 -13903778 - URR1B DNA MER1_type -15 210 1 7 1404 260 245 0 0 chr12 107354045 107354094 -13903436 + C-rich Low_complexity Low_complexity 2 50 0 7 1404 733 187 30 0 chr12 107354687 107354821 -13902709 - B1_Mur1 SINE Alu -8 141 4 7 1404 423 0 0 0 chr12 107354832 107354879 -13902651 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1404 270 0 0 0 chr12 107354879 107354908 -13902622 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1404 202 290 84 21 chr12 107354981 107355076 -13902454 - MIR SINE MIR -54 208 108 7 1404 348 272 278 13 chr12 107355876 107356103 -13901427 - RMER15 LTR ERVL -14 561 275 7 1404 280 288 24 24 chr12 107356514 107356596 -13900934 - MIRc SINE MIR -124 144 63 7 1404 883 230 158 16 chr12 107357030 107357277 -13900253 + MTE2b LTR MaLR 1 282 -97 7 1404 378 0 0 0 chr12 107358199 107358241 -13899289 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1404 226 275 85 70 chr12 107358264 107358393 -13899137 + MIRb SINE MIR 34 164 -104 7 1404 455 225 25 121 chr12 107358865 107359022 -13898508 + B1F SINE Alu 1 142 -7 7 1404 857 281 22 33 chr12 107359359 107359631 -13897899 + B4A SINE B4 2 270 -22 7 1404 396 0 0 0 chr12 107359646 107359690 -13897840 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1404 181 305 94 10 chr12 107359912 107360008 -13897522 + MIR SINE MIR 116 219 -43 7 1404 466 292 197 14 chr12 107360016 107360311 -13897219 - MLT1A0 LTR MaLR -9 356 8 7 1404 621 40 0 0 chr12 107360559 107360635 -13896895 + (GGGA)n Simple_repeat Simple_repeat 2 77 0 7 1404 207 246 0 0 chr12 107362617 107362674 -13894856 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1404 203 322 0 52 chr12 107362918 107363072 -13894458 + C-rich Low_complexity Low_complexity 4 149 0 7 1404 1006 340 32 45 chr12 107363190 107363630 -13893900 - Lx8 LINE L1 -244 7229 6796 7 1404 312 256 208 8 chr12 107363889 107364019 -13893511 - Charlie5 DNA MER1_type -52 2572 2417 7 1404 432 220 31 147 chr12 107364058 107364282 -13893248 - B3A SINE B2 0 198 1 7 1404 256 321 21 116 chr12 107364315 107364475 -13893055 + B4A SINE B4 66 219 -73 7 1404 195 42 0 0 chr12 107364524 107364548 -13892982 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1404 249 283 61 0 chr12 107365057 107365156 -13892374 + MIR SINE MIR 58 162 -100 7 1404 356 111 16 0 chr12 107366420 107366483 -13891047 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1404 342 0 0 0 chr12 107367964 107368002 -13889528 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1404 189 0 0 0 chr12 107368698 107368719 -13888811 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1404 215 304 30 0 chr12 107368894 107368970 -13888560 - BC1_Mm scRNA scRNA -3 80 3 7 1404 467 303 121 21 chr12 107368994 107369284 -13888246 - L1M2 LINE L1 -1427 4716 4398 7 1404 315 360 24 30 chr12 107369311 107369363 -13888167 + L1MCa LINE L1 2157 2209 -4299 7 1404 1220 27 0 0 chr12 107369363 107369510 -13888020 + B1_Mus2 SINE Alu 1 147 0 7 1404 315 360 24 30 chr12 107369510 107369626 -13887904 + L1MCa LINE L1 2210 2323 -4185 7 1404 216 158 0 0 chr12 107369626 107369664 -13887866 + (TGG)n Simple_repeat Simple_repeat 1 38 0 7 1404 597 258 0 47 chr12 107369684 107369855 -13887675 - RSINE1 SINE B4 0 165 3 7 1404 266 304 27 66 chr12 107369857 107370040 -13887490 - L1M2 LINE L1 -1735 4405 4230 7 1404 352 342 92 96 chr12 107370074 107370448 -13887082 + L1M2 LINE L1 4966 5341 -802 7 1404 261 0 0 0 chr12 107370448 107370477 -13887053 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 1404 1107 58 0 0 chr12 107370477 107370616 -13886914 - B1_Mus2 SINE Alu -7 140 2 7 1404 352 342 92 96 chr12 107370616 107370677 -13886853 + L1M2 LINE L1 5342 5399 -744 7 1404 955 192 65 5 chr12 107371047 107371246 -13886284 - B3 SINE B2 -5 211 1 7 1404 1939 87 93 0 chr12 107372181 107372491 -13885039 + RLTR10A LTR ERVK 73 411 0 7 1404 217 277 158 0 chr12 107372516 107372617 -13884913 - PB1D10 SINE Alu 0 117 1 7 1404 539 85 12 0 chr12 107373602 107373684 -13883846 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 7 1404 1443 63 0 25 chr12 107373695 107373891 -13883639 + B2_Mm2 SINE B2 2 192 -3 7 1404 1276 51 84 0 chr12 107374148 107374166 -13883364 - B2_Mm1a SINE B2 0 193 176 7 1404 243 0 0 0 chr12 107374166 107374193 -13883337 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1404 1276 51 84 0 chr12 107374193 107374352 -13883178 - B2_Mm1a SINE B2 -18 175 2 7 1404 180 0 0 0 chr12 107374354 107374374 -13883156 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 7 1404 535 162 16 83 chr12 107374405 107374526 -13883004 + ID_B1 SINE B4 98 210 -14 7 1404 189 0 0 0 chr12 107374527 107374548 -13882982 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1404 1062 101 0 0 chr12 107374548 107374696 -13882834 - B1_Mus1 SINE Alu 0 148 1 7 1404 187 300 118 0 chr12 107375244 107375354 -13882176 - MIR SINE MIR -37 225 103 7 1404 598 148 0 29 chr12 107376555 107376659 -13880871 + B1F1 SINE Alu 42 142 -7 7 1404 297 167 0 0 chr12 107376745 107376799 -13880731 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1404 278 253 60 12 chr12 107376893 107376977 -13880553 + MTE2b LTR MaLR 1 88 -291 7 1404 484 283 6 42 chr12 107378507 107378673 -13878857 + Lx8 LINE L1 6962 7121 -352 7 1404 222 150 0 0 chr12 107378821 107378861 -13878669 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 7 1404 255 209 29 29 chr12 107379549 107379618 -13877912 + (TATG)n Simple_repeat Simple_repeat 2 70 0 7 1404 468 251 222 33 chr12 107379619 107379862 -13877668 - B4 SINE B4 -2 290 2 7 1404 276 137 0 0 chr12 107380238 107380289 -13877241 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1404 1202 113 0 14 chr12 107380405 107380763 -13876767 + (TTC)n Simple_repeat Simple_repeat 1 353 0 7 1404 295 191 0 0 chr12 107380765 107380812 -13876718 + polypyrimidine Low_complexity Low_complexity 1 47 0 7 1404 600 127 36 0 chr12 107380812 107380922 -13876608 - ORR1C2 LTR MaLR -2 382 269 7 1404 738 281 101 0 chr12 107384058 107384275 -13873255 - B4 SINE B4 0 292 54 7 1404 183 129 0 0 chr12 107384318 107384349 -13873181 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1404 414 0 0 0 chr12 107384350 107384396 -13873134 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1404 389 291 23 77 chr12 107384929 107385149 -13872381 + B3 SINE B2 4 211 -5 7 1404 288 324 69 35 chr12 107385356 107385372 -13872158 + ID_B1 SINE B4 73 218 -3 7 1404 345 272 104 0 chr12 107385372 107385497 -13872033 + B1F SINE Alu 6 143 -6 7 1404 251 299 66 41 chr12 107385974 107386096 -13871434 - MLT1E3 LTR MaLR -110 514 390 7 1404 591 249 2 1 chr12 107386522 107386661 -13870869 - B1_Mus2 SINE Alu -3 147 7 7 1404 246 245 59 109 chr12 107386565 107386684 -13870846 - B4A SINE B4 -99 193 81 7 1404 365 262 41 53 chr12 107386689 107386858 -13870672 - Lx9 LINE L1 -20 7624 7458 7 1404 409 275 7 13 chr12 107386868 107387019 -13870511 - Lx9 LINE L1 -130 7514 7365 7 1404 1299 204 39 0 chr12 107387264 107387544 -13869986 - MTE2a LTR MaLR -11 368 78 7 1404 420 193 8 16 chr12 107388356 107388477 -13869053 + C-rich Low_complexity Low_complexity 6 125 0 8 1404 636 229 3 55 chr12 107388484 107388643 -13868887 - ID_B1 SINE B4 -46 246 93 8 1404 1073 253 54 62 chr12 107388643 107389014 -13868516 + RLTR14 LTR ERV1 1 368 -14 8 1404 1201 281 55 52 chr12 107389017 107389476 -13868054 + MT2A LTR ERVL 1 460 -73 8 1404 869 111 112 90 chr12 107389487 107389555 -13867975 + URR1A DNA MER1_type 35 109 -117 8 1404 302 0 26 0 chr12 107389562 107389600 -13867930 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1404 1172 62 7 0 chr12 107389600 107389738 -13867792 - B1_Mm SINE Alu -7 140 2 8 1404 869 111 112 90 chr12 107389738 107389857 -13867673 + URR1A DNA MER1_type 110 226 0 8 1404 197 119 70 23 chr12 107389860 107389903 -13867627 - L4 LINE RTE -1212 817 773 8 1404 2422 157 87 4 chr12 107389903 107390377 -13867153 + MERVL_2A-int LTR ERVL 23 535 -5226 8 1404 226 224 19 58 chr12 107390385 107390437 -13867093 - ID_B1 SINE B4 -129 95 46 8 1404 1356 172 37 12 chr12 107390965 107391206 -13866324 + ORR1C1 LTR MaLR 132 378 0 8 1404 225 406 8 15 chr12 107391224 107391354 -13866176 + L2c LINE L2 3254 3382 -5 8 1404 396 0 0 0 chr12 107392120 107392164 -13865366 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1404 396 0 0 0 chr12 107392164 107392207 -13865323 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1404 4028 86 37 18 chr12 107392789 107393357 -13864173 + MT2B2 LTR ERVL 3 581 -3 8 1404 374 100 17 0 chr12 107393448 107393508 -13864022 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 8 1404 3308 198 125 88 chr12 107393818 107394804 -13862726 - RMER1B Other Other -3 1063 42 8 1404 870 256 30 65 chr12 107395328 107395591 -13861939 + MLT1A0 LTR MaLR 101 354 -11 8 1404 328 222 48 14 chr12 107395846 107395992 -13861538 + CT-rich Low_complexity Low_complexity 2 152 0 8 1404 338 0 24 0 chr12 107396114 107396156 -13861374 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1404 701 233 8 0 chr12 107397706 107397839 -13859691 - MTE2b LTR MaLR 0 379 246 8 1404 877 238 46 81 chr12 107397835 107398119 -13859411 + RLTR12B LTR ERVK 25 298 -230 8 1404 782 247 43 80 chr12 107398110 107398409 -13859121 + RLTR12B LTR ERVK 238 525 -3 8 1404 563 229 329 0 chr12 107398409 107398600 -13858930 - MTE2b LTR MaLR -124 255 2 8 1404 1745 226 55 3 chr12 107399376 107399740 -13857790 + MTD LTR MaLR 1 383 -36 8 1404 600 242 110 75 chr12 107399758 107399986 -13857544 + B4 SINE B4 43 278 -14 8 1404 262 214 0 18 chr12 107401924 107401981 -13855549 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1404 449 267 176 37 chr12 107401999 107402135 -13855395 - B4A SINE B4 -136 156 2 8 1404 189 0 0 0 chr12 107402966 107402987 -13854543 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1404 411 21 0 0 chr12 107403086 107403134 -13854396 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1404 598 279 65 44 chr12 107403495 107403724 -13853806 - Tigger5 DNA MER2_type -2170 236 3 8 1404 326 107 18 0 chr12 107403997 107404053 -13853477 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1404 499 296 83 0 chr12 107404066 107404198 -13853332 - B3A SINE B2 -55 143 1 8 1404 355 273 0 0 chr12 107404371 107404470 -13853060 + L1MB8 LINE L1 6080 6178 0 8 1404 348 307 114 64 chr12 107404872 107405091 -13852439 - MLT1H1 LTR MaLR -19 536 307 8 1404 302 313 58 60 chr12 107405110 107405319 -13852211 - MLT1H1 LTR MaLR -321 234 12 8 1404 674 208 27 34 chr12 107405448 107405597 -13851933 + B1_Mur1 SINE Alu 1 148 -1 8 1404 357 131 0 0 chr12 107405958 107406019 -13851511 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1404 216 154 39 0 chr12 107406022 107406074 -13851456 + (TA)n Simple_repeat Simple_repeat 1 54 0 8 1404 1148 34 0 7 chr12 107406104 107406254 -13851276 + (TATATG)n Simple_repeat Simple_repeat 4 152 0 8 1404 981 272 39 39 chr12 107406314 107406673 -13850857 + Lx9 LINE L1 6685 7043 -601 8 1404 620 251 58 5 chr12 107406799 107406987 -13850543 - L1MA8 LINE L1 -14 6277 6080 8 1404 237 244 219 62 chr12 107407307 107407403 -13850127 + MER44B DNA MER2_type 1 111 -439 8 1404 386 94 0 15 chr12 107407696 107407761 -13849769 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1404 2657 138 82 38 chr12 107407765 107408262 -13849268 - RLTR24 LTR ERV1 -2 527 9 8 1404 410 291 98 57 chr12 107408260 107408453 -13849077 - B4 SINE B4 -10 282 82 8 1404 261 254 261 0 chr12 107408626 107408697 -13848833 + MER44B DNA MER2_type 367 459 -91 8 1404 4453 37 2 8 chr12 107408697 107409212 -13848318 + LTRIS3 LTR ERV1 1 512 0 8 1404 1054 75 181 0 chr12 107409214 107409374 -13848156 - B2_Mm2 SINE B2 -5 190 2 8 1404 261 254 261 0 chr12 107409374 107409441 -13848089 + MER44B DNA MER2_type 460 541 -9 8 1404 460 252 115 70 chr12 107409612 107409816 -13847714 - MLT1J LTR MaLR -265 247 5 8 1404 328 26 0 0 chr12 107409979 107410017 -13847513 + (TCC)n Simple_repeat Simple_repeat 1 38 0 8 1404 649 115 18 9 chr12 107410020 107410134 -13847396 + (TTTC)n Simple_repeat Simple_repeat 1 115 0 8 1404 327 49 0 0 chr12 107410135 107410176 -13847354 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 8 1404 303 100 0 7 chr12 107410190 107410244 -13847286 - B2_Mm2 SINE B2 -107 109 58 8 1404 1129 124 6 0 chr12 107410315 107410484 -13847046 - B2_Mm1t SINE B2 -22 171 2 8 1404 342 0 0 0 chr12 107410996 107411034 -13846496 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1404 378 0 0 0 chr12 107411793 107411835 -13845695 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 1404 297 0 0 0 chr12 107411835 107411867 -13845663 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1404 247 185 45 15 chr12 107412282 107412348 -13845182 + CT-rich Low_complexity Low_complexity 4 71 0 8 1404 189 0 0 0 chr12 107412753 107412774 -13844756 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1404 21 0 0 0 chr12 107413176 107413197 -13844333 + AT_rich Low_complexity Low_complexity 1 21 0 8 1404 226 157 39 0 chr12 107414368 107414419 -13843111 - ORSL DNA Tip100 -170 105 53 8 1404 414 0 0 0 chr12 107414619 107414665 -13842865 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1404 279 0 0 0 chr12 107414665 107414695 -13842835 + (GA)n Simple_repeat Simple_repeat 1 31 0 8 1404 575 310 44 30 chr12 107414784 107414987 -13842543 - B3 SINE B2 -10 206 1 8 1404 634 164 0 37 chr12 107415001 107415251 -13842279 + (TG)n Simple_repeat Simple_repeat 1 240 0 8 1404 409 265 180 39 chr12 107415303 107415348 -13842182 - B4 SINE B4 0 292 247 8 1404 470 279 17 90 chr12 107415348 107415525 -13842005 - RSINE1 SINE B4 0 165 2 8 1404 409 265 180 39 chr12 107415525 107415734 -13841796 - B4 SINE B4 -46 246 2 8 1404 384 22 0 0 chr12 107416391 107416436 -13841094 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1404 378 0 0 0 chr12 107416539 107416581 -13840949 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1404 395 322 87 43 chr12 107417699 107417884 -13839646 - ORR1E LTR MaLR -121 238 46 8 1404 448 282 229 38 chr12 107417911 107418079 -13839451 + B4A SINE B4 2 220 -72 8 1404 999 201 14 54 chr12 107418079 107418300 -13839230 + B3 SINE B2 1 212 -4 8 1404 448 282 229 38 chr12 107418300 107418367 -13839163 + B4A SINE B4 221 282 -10 8 1404 338 324 37 0 chr12 107419154 107419262 -13838268 - Tigger7 DNA MER2_type -23 2468 2357 8 1404 1317 88 0 72 chr12 107419263 107419471 -13838059 + B2_Mm2 SINE B2 1 193 -2 8 1404 510 17 0 0 chr12 107419888 107419947 -13837583 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 8 1404 283 146 0 0 chr12 107420018 107420059 -13837471 - RSINE1 SINE B4 -122 43 3 8 1404 212 54 54 0 chr12 107420095 107420132 -13837398 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 8 1404 311 109 0 21 chr12 107420157 107420204 -13837326 - RMER10A LTR ERVL -392 50 5 8 1404 301 238 70 103 chr12 107420203 107420346 -13837184 - B4 SINE B4 0 224 1 8 1404 655 165 25 12 chr12 107421593 107421848 -13835682 + (TG)n Simple_repeat Simple_repeat 1 258 0 8 1404 252 170 0 54 chr12 107421849 107421905 -13835625 + (TATG)n Simple_repeat Simple_repeat 2 54 0 8 1404 507 153 22 38 chr12 107421906 107422089 -13835441 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1404 842 208 25 0 chr12 107422138 107422297 -13835233 - B4 SINE B4 -6 286 124 8 1404 437 370 56 25 chr12 107422907 107423226 -13834304 + MLT2C2 LTR ERVL 133 461 -3 8 1404 508 240 61 14 chr12 107424675 107424823 -13832707 + B3A SINE B2 3 157 -41 8 1404 225 94 0 0 chr12 107425191 107425223 -13832307 + (TCC)n Simple_repeat Simple_repeat 1 32 0 8 1404 339 272 12 12 chr12 107425223 107425305 -13832225 - ID4 SINE ID 0 83 2 8 1404 1322 84 6 11 chr12 107425323 107425504 -13832026 - B2_Mm2 SINE B2 -14 181 2 8 1404 240 35 0 0 chr12 107425528 107425557 -13831973 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 1404 259 183 13 53 chr12 107426051 107426126 -13831404 + ID4_ SINE ID 2 73 -10 8 1404 1224 67 0 0 chr12 107426136 107426316 -13831214 + (GGA)n Simple_repeat Simple_repeat 1 180 0 8 1404 214 205 0 24 chr12 107426316 107426337 -13831193 + polypurine Low_complexity Low_complexity 1 21 0 8 1404 1137 83 0 0 chr12 107426337 107426517 -13831013 + (GGA)n Simple_repeat Simple_repeat 1 180 0 8 1404 214 205 0 24 chr12 107426517 107426580 -13830950 + GA-rich Low_complexity Low_complexity 22 83 0 8 1404 441 0 0 0 chr12 107426762 107426811 -13830719 + (CCA)n Simple_repeat Simple_repeat 1 49 0 8 1404 209 209 0 23 chr12 107427220 107427264 -13830266 + CT-rich Low_complexity Low_complexity 5 47 0 8 1404 1569 229 50 57 chr12 107427931 107428353 -13829177 + MTD LTR MaLR 1 419 0 8 1404 1029 168 0 5 chr12 107429106 107429743 -13827787 + (CA)n Simple_repeat Simple_repeat 1 634 0 8 1404 272 309 60 16 chr12 107429869 107430036 -13827494 - MER104 DNA Tc2 -2 179 1 8 1404 246 288 62 9 chr12 107430209 107430321 -13827209 + MTC-int LTR MaLR 792 909 -349 8 1404 887 280 119 10 chr12 107430744 107430920 -13826610 + MTE2a LTR MaLR 1 201 -178 8 1404 216 0 0 0 chr12 107430920 107430944 -13826586 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 8 1404 887 280 119 10 chr12 107430944 107431077 -13826453 + MTE2a LTR MaLR 202 343 -36 8 1404 191 309 29 14 chr12 107431184 107431253 -13826277 - L2a LINE L2 -74 3352 3283 8 1404 476 267 43 29 chr12 107431715 107431854 -13825676 + RMER15 LTR ERVL 273 413 -162 9 1404 333 0 0 0 chr12 107432870 107432907 -13824623 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1404 180 229 131 0 chr12 107433494 107433555 -13823975 + L2 LINE L2 676 744 -2675 9 1404 22 0 0 0 chr12 107434230 107434252 -13823278 + AT_rich Low_complexity Low_complexity 1 22 0 9 1404 647 48 39 0 chr12 107434622 107434726 -13822804 + (TC)n Simple_repeat Simple_repeat 1 108 0 9 1404 210 128 0 0 chr12 107435985 107436024 -13821506 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1404 787 138 0 103 chr12 107436024 107436169 -13821361 - B1_Mur3 SINE Alu -18 131 2 9 1404 973 232 97 8 chr12 107436636 107436884 -13820646 + B4 SINE B4 12 281 -11 9 1404 688 184 13 0 chr12 107436910 107437062 -13820468 + (CA)n Simple_repeat Simple_repeat 2 155 0 9 1404 511 232 202 36 chr12 107437062 107437285 -13820245 + MLT1B LTR MaLR 115 374 -16 9 1404 1074 188 62 5 chr12 107437897 107438106 -13819424 - URR1B DNA MER1_type 0 225 5 9 1404 333 0 0 0 chr12 107438126 107438163 -13819367 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1404 743 97 20 14 chr12 107439601 107439747 -13817783 + (TCTA)n Simple_repeat Simple_repeat 4 150 0 9 1404 256 152 30 0 chr12 107439794 107439860 -13817670 + CT-rich Low_complexity Low_complexity 1 68 0 9 1404 316 210 58 29 chr12 107439897 107440016 -13817514 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 9 1404 891 51 0 0 chr12 107440016 107440133 -13817397 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 9 1404 316 210 58 29 chr12 107440133 107440185 -13817345 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 9 1404 243 276 159 5 chr12 107440298 107440446 -13817084 + MIRm SINE MIR 31 196 -72 9 1404 279 0 0 0 chr12 107441452 107441483 -13816047 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1404 240 35 0 0 chr12 107442049 107442078 -13815452 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1404 526 131 20 0 chr12 107442561 107442660 -13814870 + C-rich Low_complexity Low_complexity 4 104 0 9 1404 1046 128 191 0 chr12 107442865 107443053 -13814477 - URR1B DNA MER1_type 0 225 2 9 1404 278 259 160 105 chr12 107443313 107443494 -13814036 + MLT1C LTR MaLR 15 205 -262 9 1404 323 326 87 44 chr12 107444245 107444428 -13813102 - HAL1-3A_ME LINE L1 -384 2474 2284 9 1404 377 287 28 9 chr12 107444819 107444928 -13812602 + CT-rich Low_complexity Low_complexity 4 114 0 9 1404 843 83 0 0 chr12 107444946 107445067 -13812463 + (TTTTC)n Simple_repeat Simple_repeat 2 122 0 9 1404 7734 88 9 2 chr12 107445069 107446644 -13810886 - L1_Mus3 LINE L1 -12 6626 5036 9 1404 418 264 121 6 chr12 107446678 107446795 -13810735 - RSINE1 SINE B4 -31 134 7 9 1404 820 201 0 7 chr12 107447257 107447407 -13810123 - B1_Mur2 SINE Alu 0 149 1 9 1404 332 221 17 111 chr12 107447302 107447419 -13810111 - MT2B LTR ERVL -344 257 152 9 1404 4351 60 21 20 chr12 107448103 107448665 -13808865 + LTRIS2 LTR ERV1 2 564 0 9 1404 974 157 0 6 chr12 107448711 107448890 -13808640 + CT-rich Low_complexity Low_complexity 3 180 0 9 1404 365 216 136 10 chr12 107448916 107449019 -13808511 - PB1D10 SINE Alu -1 116 1 9 1404 266 281 0 0 chr12 107449048 107449137 -13808393 + (TA)n Simple_repeat Simple_repeat 2 90 0 9 1404 918 291 85 61 chr12 107449396 107449937 -13807593 - L1MB1 LINE L1 -64 6104 5551 9 1404 384 22 0 0 chr12 107449937 107449982 -13807548 + (T)n Simple_repeat Simple_repeat 1 45 0 9 1404 312 226 12 19 chr12 107450040 107450129 -13807401 + MTEb LTR MaLR 271 363 -16 9 1404 744 299 69 59 chr12 107450713 107451001 -13806529 - MTE2a LTR MaLR -6 373 83 9 1404 1479 232 122 98 chr12 107451048 107451598 -13805932 - RMER4B LTR ERVK -9 576 14 9 1404 284 206 159 0 chr12 107451599 107451662 -13805868 - MTE2a LTR MaLR -293 86 14 9 1404 278 152 0 0 chr12 107451739 107451785 -13805745 - MIR SINE MIR -77 131 86 9 1404 230 170 88 70 chr12 107451942 107451999 -13805531 - MLT1J1 LTR MaLR -4 440 383 9 1404 548 246 95 10 chr12 107452240 107452514 -13805016 + ORR1E LTR MaLR 1 379 0 9 1404 277 314 158 57 chr12 107452981 107453164 -13804366 + MIRb SINE MIR 17 223 -45 9 1404 935 344 25 50 chr12 107454286 107454740 -13802790 - L1ME1 LINE L1 -175 6004 5561 9 1404 595 184 249 6 chr12 107454740 107454909 -13802621 - B3 SINE B2 -6 210 1 9 1404 935 344 25 50 chr12 107454909 107455161 -13802369 - L1ME1 LINE L1 -619 5560 5315 9 1404 368 308 44 39 chr12 107455239 107455442 -13802088 - L1MC1 LINE L1 -62 6271 6068 9 1404 1132 292 73 29 chr12 107455447 107455994 -13801536 - L1MC1 LINE L1 -428 5905 5335 9 1404 810 189 0 0 chr12 107456005 107456185 -13801345 + CT-rich Low_complexity Low_complexity 1 180 0 9 1404 365 98 0 16 chr12 107456211 107456223 -13801307 + (TCCC)n Simple_repeat Simple_repeat 2 12 0 9 1404 1620 0 0 0 chr12 107456223 107456403 -13801127 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 9 1404 365 98 0 16 chr12 107456403 107456452 -13801078 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 9 1404 890 161 0 0 chr12 107456459 107456596 -13800934 - B1_Mur4 SINE Alu -7 143 7 9 1404 298 294 11 11 chr12 107456655 107456748 -13800782 + BC1_Mm scRNA scRNA 2 94 -58 9 1404 231 287 137 24 chr12 107456818 107456986 -13800544 - L1ME1 LINE L1 -900 5246 5060 9 1404 312 343 0 38 chr12 107457663 107457769 -13799761 - MLT1A0 LTR MaLR -77 288 187 9 1404 1431 50 0 0 chr12 107457988 107458168 -13799362 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 9 1404 1088 128 0 6 chr12 107458183 107458363 -13799167 + (TTC)n Simple_repeat Simple_repeat 1 179 0 9 1404 486 0 0 0 chr12 107458809 107458863 -13798667 + (TC)n Simple_repeat Simple_repeat 1 54 0 9 1404 1095 145 11 0 chr12 107458873 107459052 -13798478 - B2_Mm1t SINE B2 -11 182 2 9 1404 3268 196 63 142 chr12 107459821 107460931 -13796599 + RMER1B Other Other 45 1066 0 9 1404 317 160 10 50 chr12 107461383 107461482 -13796048 + CT-rich Low_complexity Low_complexity 2 96 0 9 1404 420 265 140 0 chr12 107461946 107462082 -13795448 + MIRb SINE MIR 56 210 -58 9 1404 201 194 70 56 chr12 107462204 107462275 -13795255 - L2b LINE L2 -14 3361 3290 9 1404 1006 149 115 38 chr12 107462810 107463019 -13794511 - URR1A DNA MER1_type 0 226 2 9 1404 226 293 207 35 chr12 107463686 107463831 -13793699 - MLT2B1 LTR ERVL -185 335 166 9 1404 276 265 104 38 chr12 107463991 107464097 -13793433 - MIRb SINE MIR -59 209 97 9 1404 186 43 0 0 chr12 107464187 107464210 -13793320 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1404 547 244 98 0 chr12 107464211 107464334 -13793196 - B1_Mur2 SINE Alu -13 136 2 9 1404 234 0 0 0 chr12 107464873 107464899 -13792631 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1404 23 0 0 0 chr12 107466108 107466131 -13791399 + AT_rich Low_complexity Low_complexity 1 23 0 9 1404 894 19 0 0 chr12 107466296 107466400 -13791130 + (TTC)n Simple_repeat Simple_repeat 2 105 0 9 1404 469 293 57 13 chr12 107466406 107466565 -13790965 + MER58B DNA MER1_type 87 252 -89 9 1404 251 265 84 47 chr12 107466799 107466906 -13790624 - LTR33A_ LTR ERVL -256 275 165 9 1404 452 329 41 14 chr12 107466934 107467079 -13790451 - MTEa LTR MaLR -228 151 3 9 1404 238 340 144 25 chr12 107467084 107467116 -13790414 - MTEa-int LTR MaLR -3 1577 1545 9 1404 581 61 12 0 chr12 107467116 107467198 -13790332 + (TA)n Simple_repeat Simple_repeat 1 83 0 9 1404 873 324 212 21 chr12 107467198 107467633 -13789897 - MTEa-int LTR MaLR -36 1544 1023 9 1404 1068 123 12 6 chr12 107467745 107467908 -13789622 + B2_Mm2 SINE B2 1 164 -31 9 1404 795 283 245 18 chr12 107467969 107468361 -13789169 - MTEa-int LTR MaLR -1099 481 1 9 1404 470 236 100 132 chr12 107468369 107468559 -13788971 + MLT1D LTR MaLR 9 192 -313 9 1404 569 229 156 16 chr12 107468944 107469130 -13788400 - B3 SINE B2 0 216 5 9 1404 427 382 45 40 chr12 107469528 107469907 -13787623 - Charlie1 DNA MER1_type -38 2743 2363 9 1404 513 286 152 25 chr12 107470317 107470554 -13786976 + Tigger15a DNA TcMar 449 715 0 9 1404 359 189 182 36 chr12 107472268 107472378 -13785152 - B4A SINE B4 -156 136 11 9 1404 222 255 120 56 chr12 107472281 107472389 -13785141 - B3A SINE B2 -80 118 4 9 1404 479 282 9 0 chr12 107473493 107473603 -13783927 + PB1D10 SINE Alu 5 115 -2 9 1404 1016 229 66 26 chr12 107473617 107473890 -13783640 + B4 SINE B4 3 286 -6 9 1404 639 196 0 0 chr12 107473907 107474080 -13783450 + (CA)n Simple_repeat Simple_repeat 2 174 0 9 1404 621 143 11 22 chr12 107474061 107474240 -13783290 + (CAGA)n Simple_repeat Simple_repeat 4 180 0 9 1404 433 202 11 0 chr12 107474245 107474339 -13783191 + (CA)n Simple_repeat Simple_repeat 2 96 0 9 1404 434 352 118 73 chr12 107474724 107475190 -13782340 - MT2A LTR ERVL 0 554 68 9 1404 203 225 14 0 chr12 107475197 107475268 -13782262 + (TATG)n Simple_repeat Simple_repeat 4 75 0 9 1404 412 296 66 40 chr12 107475271 107475569 -13781961 - RSINE1 SINE B4 -12 280 1 9 1404 845 147 81 0 chr12 107475609 107475745 -13781785 + B1_Mur3 SINE Alu 1 147 -2 9 1404 873 124 31 0 chr12 107475745 107476230 -13781300 + (CCAA)n Simple_repeat Simple_repeat 1 500 0 9 1404 343 306 49 170 chr12 107476249 107476473 -13781057 + B3A SINE B2 2 198 0 9 1404 601 227 105 47 chr12 107476788 107476843 -13780687 - B4 SINE B4 -20 272 210 9 1404 3431 42 0 5 chr12 107476843 107477245 -13780285 - MTB LTR MaLR 0 400 1 9 1404 601 227 105 47 chr12 107477245 107477360 -13780170 - B4 SINE B4 -83 209 92 9 1404 402 204 290 84 chr12 107477994 107478107 -13779423 + B3 SINE B2 1 127 -89 9 1404 372 22 0 0 chr12 107478107 107478152 -13779378 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1404 312 204 290 84 chr12 107478152 107478193 -13779337 + B2_Mm2 SINE B2 126 187 -8 9 1404 819 188 0 0 chr12 107478287 107478603 -13778927 + (TG)n Simple_repeat Simple_repeat 1 316 0 9 1404 602 285 95 37 chr12 107478618 107478891 -13778639 - B4 SINE B4 -2 290 2 9 1405 686 182 52 15 chr12 107479387 107479521 -13778009 - B1F2 SINE Alu 0 149 11 9 1405 454 152 0 21 chr12 107479859 107479953 -13777577 + CT-rich Low_complexity Low_complexity 3 94 0 9 1405 199 379 60 8 chr12 107481467 107481600 -13775930 + MIRb SINE MIR 63 202 -66 9 1405 195 337 107 81 chr12 107481898 107482169 -13775361 - L2b LINE L2 -28 3347 3070 1 1405 972 216 167 4 chr12 107482363 107482609 -13774921 - B4 SINE B4 -2 290 5 1 1405 333 0 0 0 chr12 107483888 107483925 -13773605 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1405 239 350 41 35 chr12 107484424 107484569 -13772961 - LTR33B LTR ERVL -39 464 319 1 1405 608 315 28 17 chr12 107484861 107485042 -13772488 - MTE2b LTR MaLR -192 187 5 1 1405 551 234 48 34 chr12 107485073 107485208 -13772322 + B1F1 SINE Alu 2 139 -10 1 1405 738 0 0 0 chr12 107485208 107485290 -13772240 + (CAAAG)n Simple_repeat Simple_repeat 2 83 0 1 1405 516 32 0 0 chr12 107485317 107485379 -13772151 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 1 1405 253 222 0 0 chr12 107485485 107485548 -13771982 + A-rich Low_complexity Low_complexity 1 63 0 1 1405 386 168 144 21 chr12 107485698 107485795 -13771735 - PB1D10 SINE Alu -8 109 1 1 1405 21 0 0 0 chr12 107486928 107486949 -13770581 + AT_rich Low_complexity Low_complexity 1 21 0 1 1405 233 196 0 0 chr12 107487186 107487232 -13770298 + G-rich Low_complexity Low_complexity 1 46 0 1 1405 967 210 43 22 chr12 107487631 107487816 -13769714 - B3 SINE B2 -22 194 6 1 1405 336 379 74 26 chr12 107488006 107488315 -13769215 - MER58B DNA MER1_type -3 338 15 1 1405 582 273 151 25 chr12 107488465 107488664 -13768866 + ID_B1 SINE B4 1 224 0 1 1405 246 156 23 62 chr12 107488664 107488799 -13768731 + GA-rich Low_complexity Low_complexity 1 129 0 1 1405 993 150 0 0 chr12 107488993 107489173 -13768357 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1405 474 143 0 0 chr12 107489948 107490039 -13767491 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1 1405 279 182 26 13 chr12 107490064 107490142 -13767388 + CT-rich Low_complexity Low_complexity 1 79 0 1 1405 583 275 102 98 chr12 107490748 107490994 -13766536 + B4 SINE B4 27 273 -19 1 1405 240 35 0 0 chr12 107491009 107491038 -13766492 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1405 261 139 0 0 chr12 107491111 107491154 -13766376 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1405 180 97 0 0 chr12 107491274 107491305 -13766225 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1405 1218 81 0 0 chr12 107491307 107491455 -13766075 - B1_Mus1 SINE Alu 0 148 1 1 1405 423 0 0 0 chr12 107491772 107491819 -13765711 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1405 273 316 43 86 chr12 107491849 107492036 -13765494 - MER44B DNA MER2_type -8 542 364 1 1405 198 0 0 0 chr12 107492046 107492068 -13765462 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1405 729 299 118 25 chr12 107492081 107492444 -13765086 - MER44B DNA MER2_type -138 412 16 1 1405 1796 216 74 3 chr12 107493289 107493666 -13763864 - MTD LTR MaLR -15 404 1 1 1405 2588 80 3 0 chr12 107493826 107494152 -13763378 + ORR1A2 LTR MaLR 1 327 0 1 1405 290 61 286 0 chr12 107494626 107494675 -13762855 - URR1B DNA MER1_type 0 225 163 1 1405 2288 174 196 14 chr12 107494678 107495178 -13762352 + MT2B LTR ERVL 1 591 -10 1 1405 462 218 216 8 chr12 107495184 107495318 -13762212 - URR1B DNA MER1_type -62 163 2 1 1405 199 265 20 0 chr12 107497184 107497233 -13760297 - MIR SINE MIR -129 133 84 1 1405 333 302 32 32 chr12 107497411 107497565 -13759965 - MLT1C LTR MaLR -37 430 277 1 1405 339 307 110 0 chr12 107497671 107497798 -13759732 - MTE2b LTR MaLR -25 354 214 1 1405 450 0 0 0 chr12 107498665 107498715 -13758815 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1405 2926 88 231 14 chr12 107498727 107499221 -13758309 + MT2B LTR ERVL 1 601 0 1 1405 317 301 18 24 chr12 107499305 107499475 -13758055 + (CACCAT)n Simple_repeat Simple_repeat 4 172 0 1 1405 390 361 13 27 chr12 107499501 107499730 -13757800 + HAL1-2a_MD LINE L1 2345 2502 -522 1 1405 252 271 90 30 chr12 107500056 107500189 -13757341 - L1MB3 LINE L1 -3 6168 6028 1 1405 444 297 40 0 chr12 107500251 107500399 -13757131 - L1MB3 LINE L1 -255 5928 5775 1 1405 228 234 21 0 chr12 107501508 107501555 -13755975 - B4A SINE B4 -161 131 84 2 1405 198 71 0 0 chr12 107501645 107501673 -13755857 + (CATG)n Simple_repeat Simple_repeat 1 28 0 3 1405 644 311 96 8 chr12 107502590 107502840 -13754690 + B4 SINE B4 4 275 -17 4 1405 1374 7 0 0 chr12 107502841 107502996 -13754534 + (TCTCCC)n Simple_repeat Simple_repeat 3 157 0 5 1405 1206 252 58 36 chr12 107503185 107503515 -13754015 + MTEa LTR MaLR 1 337 -42 6 1405 384 167 0 0 chr12 107503518 107503590 -13753940 + CT-rich Low_complexity Low_complexity 2 73 0 7 1405 299 190 121 0 chr12 107503590 107503648 -13753882 + MTEa LTR MaLR 313 377 -2 6 1405 234 356 53 33 chr12 107503900 107504051 -13753479 + L2b LINE L2 3220 3373 -2 8 1405 267 280 28 57 chr12 107504526 107504632 -13752898 + MIRb SINE MIR 22 124 -144 9 1405 236 305 31 31 chr12 107505157 107505255 -13752275 + MLT1A1 LTR MaLR 21 118 -290 1 1405 286 170 0 0 chr12 107505245 107505292 -13752238 + MTE2b LTR MaLR 326 372 -7 1 1405 496 185 26 9 chr12 107505378 107505534 -13751996 - B3A SINE B2 -25 191 5 1 1405 657 157 0 0 chr12 107505555 107505670 -13751860 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1405 180 0 0 0 chr12 107505670 107505690 -13751840 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1405 405 0 0 0 chr12 107505805 107505850 -13751680 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1405 323 127 0 16 chr12 107506824 107506888 -13750642 + (TCCC)n Simple_repeat Simple_repeat 1 63 0 1 1405 352 316 173 0 chr12 107506889 107507022 -13750508 - HAL1-3A_ME LINE L1 -419 2439 2284 1 1405 242 315 11 22 chr12 107507022 107507113 -13750417 + CT-rich Low_complexity Low_complexity 2 91 0 1 1405 351 300 62 0 chr12 107507351 107507481 -13750049 - L2a LINE L2 -288 3138 3001 1 1405 1311 279 145 13 chr12 107507492 107507515 -13750015 - L1M2 LINE L1 -1347 4796 4771 2 1405 261 0 0 0 chr12 107507515 107507544 -13749986 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1405 468 0 0 0 chr12 107507544 107507595 -13749935 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1405 1311 279 145 13 chr12 107507595 107508267 -13749263 - L1M2 LINE L1 -1373 4770 4009 2 1405 349 271 138 8 chr12 107508269 107508399 -13749131 + L1M2 LINE L1 5149 5295 -848 2 1405 300 222 0 0 chr12 107509288 107509360 -13748170 + (TCCA)n Simple_repeat Simple_repeat 2 73 0 2 1405 528 296 67 58 chr12 107509597 107509837 -13747693 - MLT1A0 LTR MaLR -1 364 123 2 1405 649 280 131 25 chr12 107510324 107510569 -13746961 - B4A SINE B4 -21 271 1 2 1405 410 330 9 0 chr12 107510604 107510713 -13746817 - PB1D10 SINE Alu -7 110 1 2 1405 231 233 122 122 chr12 107510722 107510820 -13746710 + MER58D DNA MER1_type 272 369 -17 2 1405 468 0 0 0 chr12 107511461 107511513 -13746017 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1405 28 48 0 0 chr12 107512202 107512244 -13745286 + AT_rich Low_complexity Low_complexity 1 42 0 3 1405 21 0 0 0 chr12 107513252 107513273 -13744257 + AT_rich Low_complexity Low_complexity 1 21 0 3 1405 702 173 0 0 chr12 107513275 107513408 -13744122 + (CA)n Simple_repeat Simple_repeat 2 134 0 3 1405 322 260 43 109 chr12 107515088 107515265 -13742265 - B3A SINE B2 -5 211 46 3 1405 413 292 28 0 chr12 107515292 107515398 -13742132 + L1M5 LINE L1 5436 5544 -696 3 1405 296 385 32 27 chr12 107515920 107516107 -13741423 + L4 LINE RTE 1658 1845 -184 3 1405 654 272 90 114 chr12 107517608 107517940 -13739590 - MTD LTR MaLR -92 327 4 3 1405 567 243 0 18 chr12 107517940 107518050 -13739480 + B4 SINE B4 176 283 -9 3 1405 195 125 0 0 chr12 107518707 107518747 -13738783 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1405 194 164 18 0 chr12 107518880 107518935 -13738595 + CT-rich Low_complexity Low_complexity 2 57 0 3 1405 2013 101 78 0 chr12 107518991 107519287 -13738243 + ORR1A2 LTR MaLR 1 319 -8 4 1405 332 276 56 27 chr12 107520001 107520137 -13737393 - MTD LTR MaLR 0 419 240 4 1405 897 267 54 25 chr12 107520174 107520455 -13737075 - MTD LTR MaLR -121 286 5 4 1405 666 0 0 0 chr12 107520473 107520555 -13736975 - L1Md_A LINE L1 0 6582 6501 4 1405 534 16 0 0 chr12 107520607 107520670 -13736860 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1405 1325 239 25 110 chr12 107521821 107522221 -13735309 + MTEa LTR MaLR 6 371 -8 4 1405 192 333 47 47 chr12 107522232 107522339 -13735191 + MIRb SINE MIR 46 152 -116 4 1405 437 174 10 0 chr12 107523365 107523463 -13734067 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 1405 254 345 83 51 chr12 107523501 107523718 -13733812 - RMER12 LTR ERVK -363 959 736 4 1405 410 299 0 0 chr12 107523936 107524033 -13733497 - MTEa LTR MaLR -282 97 1 4 1405 670 250 47 18 chr12 107524201 107524366 -13733164 - MTE2a LTR MaLR -13 366 197 4 1405 1157 88 28 34 chr12 107524366 107524542 -13732988 + B2_Mm2 SINE B2 3 177 -18 5 1405 648 254 32 141 chr12 107524561 107524781 -13732749 - MTE2a LTR MaLR -183 196 1 4 1405 1302 74 0 0 chr12 107525274 107525449 -13732081 + (TTCTC)n Simple_repeat Simple_repeat 4 178 0 5 1405 480 129 0 0 chr12 107525917 107526018 -13731512 + (TCTG)n Simple_repeat Simple_repeat 4 104 0 5 1405 1258 226 48 60 chr12 107526078 107526472 -13731058 + MTE2a LTR MaLR 18 419 0 5 1405 288 243 56 46 chr12 107526472 107526573 -13730957 - PB1D9 SINE Alu -18 102 1 5 1405 321 222 47 47 chr12 107526493 107526578 -13730952 - B4 SINE B4 -127 165 81 5 1405 440 224 0 0 chr12 107526613 107526698 -13730832 - B4 SINE B4 -206 86 2 5 1405 222 234 0 45 chr12 107528053 107528120 -13729410 + CT-rich Low_complexity Low_complexity 2 65 0 5 1405 360 0 0 0 chr12 107528165 107528205 -13729325 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1405 807 294 56 4 chr12 107528205 107528454 -13729076 - B4 SINE B4 -23 269 8 5 1405 186 71 0 0 chr12 107529466 107529494 -13728036 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 5 1405 408 20 0 0 chr12 107530634 107530683 -13726847 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1405 315 215 88 12 chr12 107530683 107530763 -13726767 - B4A SINE B4 -205 87 2 6 1405 765 33 32 16 chr12 107531644 107531767 -13725763 + (CA)n Simple_repeat Simple_repeat 1 125 0 6 1405 21 0 0 0 chr12 107531791 107531812 -13725718 + AT_rich Low_complexity Low_complexity 1 21 0 6 1405 252 0 0 0 chr12 107532030 107532058 -13725472 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1405 314 301 173 22 chr12 107532364 107532595 -13724935 - MLT1J LTR MaLR -2 510 245 6 1405 461 171 265 0 chr12 107532834 107532951 -13724579 + URR1B DNA MER1_type 2 149 -76 6 1405 1300 27 0 0 chr12 107532973 107533120 -13724410 + B1_Mus1 SINE Alu 1 147 -1 6 1405 182 122 24 0 chr12 107533602 107533622 -13723908 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 6 1405 324 103 0 0 chr12 107533622 107533680 -13723850 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 6 1405 182 122 24 0 chr12 107533680 107533700 -13723830 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 7 1405 745 333 79 29 chr12 107533741 107533810 -13723720 - B4A SINE B4 0 292 221 7 1405 4176 124 81 13 chr12 107533810 107534518 -13723012 - RMER6A LTR ERVK 0 756 1 7 1405 745 333 79 29 chr12 107534518 107534726 -13722804 - B4A SINE B4 -72 220 1 7 1405 270 209 28 69 chr12 107535020 107535092 -13722438 + MTE2a LTR MaLR 258 326 -53 7 1405 388 266 55 55 chr12 107535593 107535756 -13721774 + RSINE1 SINE B4 3 165 0 7 1405 624 205 0 0 chr12 107535756 107535912 -13721618 + (CA)n Simple_repeat Simple_repeat 1 156 0 7 1405 597 125 0 0 chr12 107535926 107536046 -13721484 + (CA)n Simple_repeat Simple_repeat 1 120 0 7 1405 309 356 52 0 chr12 107536051 107536166 -13721364 + RSINE1 SINE B4 43 163 -2 7 1405 407 293 29 59 chr12 107536140 107536379 -13721151 - RMER12 LTR ERVK -321 1001 770 7 1405 275 282 0 25 chr12 107536383 107536463 -13721067 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 7 1405 270 0 0 0 chr12 107536465 107536495 -13721035 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1405 225 139 0 0 chr12 107537015 107537058 -13720472 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 8 1405 411 238 9 47 chr12 107537132 107537238 -13720292 - PB1 SINE Alu -2 125 24 8 1405 2172 67 0 7 chr12 107537435 107537718 -13719812 - L1_Mus2 LINE L1 -619 5947 5667 8 1405 5249 51 0 0 chr12 107537718 107538340 -13719190 + L1_Mus2 LINE L1 5945 6566 0 8 1405 2172 67 0 7 chr12 107538340 107538356 -13719174 - L1_Mus2 LINE L1 -900 5666 5651 8 1405 311 292 63 42 chr12 107538589 107538732 -13718798 - B1F1 SINE Alu 0 149 4 8 1405 297 75 0 0 chr12 107538734 107538774 -13718756 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 8 1405 318 50 0 0 chr12 107538791 107538831 -13718699 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1405 636 219 71 47 chr12 107538834 107539045 -13718485 - B3 SINE B2 0 216 1 8 1405 251 200 0 0 chr12 107539188 107539233 -13718297 + RMER30 DNA MER1_type 7 51 -151 8 1405 536 222 0 6 chr12 107539645 107539826 -13717704 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1405 210 189 0 0 chr12 107541735 107541747 -13715783 + polypyrimidine Low_complexity Low_complexity 26 37 0 8 1405 1039 111 0 27 chr12 107541747 107541932 -13715598 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 9 1405 210 189 0 0 chr12 107541932 107541956 -13715574 + polypyrimidine Low_complexity Low_complexity 2 25 0 9 1405 416 96 0 40 chr12 107542364 107542440 -13715090 + (T)n Simple_repeat Simple_repeat 1 73 0 9 1405 25 31 0 0 chr12 107542706 107542738 -13714792 + AT_rich Low_complexity Low_complexity 1 32 0 9 1405 435 19 0 0 chr12 107542752 107542804 -13714726 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1405 211 224 0 58 chr12 107544024 107544076 -13713454 + MIRc SINE MIR 74 122 -146 9 1405 198 0 0 0 chr12 107544297 107544319 -13713211 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1405 21 0 0 0 chr12 107544982 107545003 -13712527 + AT_rich Low_complexity Low_complexity 1 21 0 9 1405 232 257 14 0 chr12 107547124 107547194 -13710336 + (TTG)n Simple_repeat Simple_repeat 2 72 0 9 1405 231 125 0 82 chr12 107548662 107548723 -13708807 + T-rich Low_complexity Low_complexity 5 60 0 9 1405 200 114 45 0 chr12 107549695 107549739 -13707791 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 1 1405 540 210 69 42 chr12 107552267 107552411 -13705119 - MTC LTR MaLR -273 148 1 1 1405 25 0 0 0 chr12 107552850 107552875 -13704655 + AT_rich Low_complexity Low_complexity 1 25 0 1 1405 229 238 139 65 chr12 107553039 107553147 -13704383 - L2b LINE L2 0 3375 3260 1 1405 180 0 0 0 chr12 107553243 107553263 -13704267 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1405 1427 199 171 14 chr12 107553612 107553974 -13703556 - MTD LTR MaLR 0 419 1 1 1405 1289 27 0 7 chr12 107554714 107554862 -13702668 - B1_Mm SINE Alu 0 147 1 1 1405 209 33 33 0 chr12 107554864 107554894 -13702636 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1405 244 372 0 0 chr12 107554900 107554994 -13702536 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1405 600 59 0 0 chr12 107555032 107555117 -13702413 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 1 1405 203 146 0 24 chr12 107555117 107555159 -13702371 + CT-rich Low_complexity Low_complexity 1 41 0 1 1405 577 327 92 39 chr12 107555265 107555472 -13702058 - B4A SINE B4 -72 220 3 1 1405 734 314 44 64 chr12 107555496 107555856 -13701674 - MLT1A0 LTR MaLR -1 364 12 1 1405 279 286 146 38 chr12 107556111 107556296 -13701234 - LFSINE_Vert SINE SINE -4 455 251 1 1405 232 330 60 90 chr12 107556908 107557141 -13700389 + RMER12 LTR ERVK 729 954 -368 1 1405 474 319 8 0 chr12 107557141 107557260 -13700270 - B4 SINE B4 -172 120 1 1 1405 486 274 174 71 chr12 107557260 107557467 -13700063 - B4 SINE B4 -62 230 1 1 1405 221 271 0 0 chr12 107558467 107558515 -13699015 + PB1D10 SINE Alu 62 109 -8 1 1405 797 135 0 57 chr12 107558804 107558945 -13698585 - B1_Mur2 SINE Alu -4 145 13 1 1405 235 278 70 30 chr12 107559272 107559372 -13698158 - Lx7 LINE L1 -1789 5907 5804 1 1405 229 346 26 0 chr12 107560237 107560315 -13697215 - ID4_ SINE ID -1 82 3 1 1405 224 149 21 0 chr12 107560321 107560368 -13697162 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 1 1405 560 235 68 0 chr12 107560373 107560505 -13697025 - B1F SINE Alu -8 141 1 1 1405 318 243 27 64 chr12 107561740 107561850 -13695680 - PB1D10 SINE Alu -1 116 11 1 1405 350 276 34 11 chr12 107563073 107563161 -13694369 + RSINE1 SINE B4 41 130 -35 1 1405 408 20 0 0 chr12 107563161 107563210 -13694320 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1405 21 0 0 0 chr12 107563210 107563231 -13694299 + AT_rich Low_complexity Low_complexity 1 21 0 1 1405 378 0 0 0 chr12 107563627 107563669 -13693861 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1405 500 0 17 0 chr12 107565339 107565399 -13692131 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1405 180 0 0 0 chr12 107566436 107566456 -13691074 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1405 641 289 46 81 chr12 107566527 107566810 -13690720 + B4A SINE B4 2 274 -18 1 1405 423 0 0 0 chr12 107566831 107566878 -13690652 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1405 405 0 0 0 chr12 107566878 107566922 -13690608 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1405 312 293 165 46 chr12 107567206 107567424 -13690106 + L1M5 LINE L1 3353 3596 -2550 1 1405 841 141 271 0 chr12 107567441 107567611 -13689919 + B3 SINE B2 1 216 0 1 1405 441 0 0 0 chr12 107567622 107567671 -13689859 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1405 635 266 38 0 chr12 107567671 107567829 -13689701 - B3A SINE B2 -34 164 1 1 1405 575 251 82 0 chr12 107568168 107568351 -13689179 + B3A SINE B2 1 198 0 1 1405 835 248 61 26 chr12 107568385 107568443 -13689087 + Lx7 LINE L1 7375 7434 -262 1 1405 189 0 0 0 chr12 107568443 107568464 -13689066 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1405 835 248 61 26 chr12 107568464 107568716 -13688814 + Lx7 LINE L1 7435 7696 0 1 1405 800 231 83 32 chr12 107569337 107569614 -13687916 - B4A SINE B4 0 292 2 1 1405 212 191 71 0 chr12 107569749 107569791 -13687739 + MIR SINE MIR 210 254 -8 1 1405 255 79 0 0 chr12 107570111 107570149 -13687381 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1405 667 228 14 35 chr12 107570151 107570292 -13687238 - B3 SINE B2 -50 166 29 1 1405 333 68 0 0 chr12 107570319 107570363 -13687167 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 1405 1018 17 0 0 chr12 107570373 107570493 -13687037 - B1_Mm SINE Alu -8 139 20 1 1405 500 292 33 33 chr12 107570497 107570649 -13686881 - B3 SINE B2 0 216 65 1 1405 1043 271 105 22 chr12 107571375 107571699 -13685831 - MTEa LTR MaLR -2 377 27 1 1405 467 322 52 52 chr12 107573199 107573293 -13684237 - RSINE1 SINE B4 -11 154 60 1 1405 808 213 64 156 chr12 107573293 107573698 -13683832 - RLTR9A LTR ERVK 0 368 1 1 1405 467 322 52 52 chr12 107573698 107573757 -13683773 - RSINE1 SINE B4 -106 59 1 1 1405 1356 234 61 42 chr12 107574257 107574667 -13682863 + MTD-int LTR MaLR 840 1257 -1 1 1405 1472 190 179 8 chr12 107574668 107575019 -13682511 + MTD LTR MaLR 1 411 -8 1 1405 483 18 0 0 chr12 107575043 107575099 -13682431 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1405 274 280 13 51 chr12 107575778 107575857 -13681673 + MIR SINE MIR 76 151 -57 1 1405 431 299 88 18 chr12 107576108 107576278 -13681252 + LTR33A LTR ERVL 295 476 -44 1 1405 604 24 24 0 chr12 107576406 107576488 -13681042 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 1405 432 0 0 0 chr12 107576488 107576536 -13680994 + (TCC)n Simple_repeat Simple_repeat 2 49 0 1 1405 815 193 93 5 chr12 107576757 107576950 -13680580 - B3 SINE B2 -6 210 1 1 1405 244 264 125 52 chr12 107576969 107577065 -13680465 + PB1D7 SINE Alu 5 107 -13 1 1405 500 111 12 0 chr12 107577771 107577852 -13679678 + (TCC)n Simple_repeat Simple_repeat 1 82 0 1 1405 323 248 0 9 chr12 107577829 107577935 -13679595 + CT-rich Low_complexity Low_complexity 3 107 0 1 1405 352 266 92 45 chr12 107578042 107578231 -13679299 - MIRc SINE MIR -44 218 26 1 1405 203 256 0 0 chr12 107578334 107578377 -13679153 - L2b LINE L2 -19 3356 3314 1 1405 1284 252 64 27 chr12 107578592 107578996 -13678534 - MTD LTR MaLR 0 419 1 1 1405 486 312 76 22 chr12 107578999 107579222 -13678308 - CYRA11_Mm Unknown Y-chromosome -211 406 172 1 1405 896 211 111 0 chr12 107579024 107579223 -13678307 + URR1A DNA MER1_type 6 226 0 1 1405 285 146 0 0 chr12 107579239 107579287 -13678243 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1405 701 270 42 46 chr12 107579849 107580132 -13677398 + Lx8 LINE L1 7104 7385 -88 1 1405 401 95 16 0 chr12 107580177 107580240 -13677290 + (CAA)n Simple_repeat Simple_repeat 2 65 0 1 1405 361 179 8 158 chr12 107580644 107580777 -13676753 + PB1D10 SINE Alu 2 114 -3 1 1405 214 342 12 12 chr12 107580777 107580857 -13676673 + ID4 SINE ID 1 80 -3 1 1405 399 261 65 0 chr12 107581246 107581338 -13676192 + B4A SINE B4 195 292 0 1 1405 200 213 0 16 chr12 107581377 107581439 -13676091 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1405 395 288 35 59 chr12 107581478 107581733 -13675797 + L1MEc LINE L1 937 1185 -5215 1 1405 1174 298 92 40 chr12 107582188 107582740 -13674790 + Lx8 LINE L1 6864 7444 -29 1 1405 290 253 105 7 chr12 107582906 107583059 -13674471 + L1ME2 LINE L1 5925 6102 -60 1 1405 9166 13 0 0 chr12 107583141 107584697 -13672833 - L1Md_T LINE L1 0 6582 5027 1 1405 291 371 16 0 chr12 107585394 107585518 -13672012 + Tigger7 DNA MER2_type 180 305 -2186 1 1405 1076 318 64 6 chr12 107585532 107585874 -13671656 + MTEa LTR MaLR 18 379 0 1 1405 803 195 128 0 chr12 107586221 107586414 -13671116 - ORR1D2 LTR MaLR 0 370 153 1 1405 1191 267 120 154 chr12 107586414 107586870 -13670660 - MT2B LTR ERVL 0 601 79 1 1405 1390 93 0 5 chr12 107586870 107587065 -13670465 + B2_Mm2 SINE B2 1 194 -1 1 1405 912 267 120 154 chr12 107587065 107587158 -13670372 - MT2B LTR ERVL -455 78 3 1 1405 318 264 7 94 chr12 107587158 107587292 -13670238 - ORR1D2-int LTR MaLR -1275 688 567 1 1405 727 155 101 0 chr12 107587300 107587448 -13670082 - MERVL_2A-int LTR ERVL -71 5690 5528 1 1405 2194 147 43 6 chr12 107587448 107587797 -13669733 + ORR1B2 LTR MaLR 1 362 -5 1 1405 12360 161 22 1 chr12 107587798 107589802 -13667728 - MERVL_2A-int LTR ERVL -232 5529 3484 1 1405 4661 158 60 11 chr12 107589804 107590611 -13666919 + RMER19B LTR ERVK 1 846 -56 1 1405 200 342 66 0 chr12 107591057 107591133 -13666397 + L2a LINE L2 3345 3425 -1 1 1405 26 74 0 0 chr12 107591738 107591792 -13665738 + AT_rich Low_complexity Low_complexity 1 54 0 1 1405 480 18 0 0 chr12 107592710 107592767 -13664763 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1405 536 326 79 0 chr12 107592947 107593125 -13664405 - B4A SINE B4 -19 273 82 1 1405 678 180 0 0 chr12 107593150 107593328 -13664202 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 1 1405 728 156 0 11 chr12 107593344 107593525 -13664005 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1 1405 218 292 100 11 chr12 107593786 107593876 -13663654 - MIR SINE MIR -105 103 6 1 1405 251 333 105 63 chr12 107594053 107594386 -13663144 + Tigger13a DNA MER2_type 136 482 -289 1 1405 193 343 193 6 chr12 107594786 107594962 -13662568 + MIRc SINE MIR 22 230 -38 1 1405 1238 192 0 5 chr12 107595277 107595491 -13662039 + B3 SINE B2 4 216 0 1 1405 197 139 23 0 chr12 107595737 107595780 -13661750 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1 1405 279 327 62 62 chr12 107596682 107596842 -13660688 + MER5B DNA MER1_type 17 176 -2 1 1405 267 300 0 0 chr12 107596864 107596924 -13660606 - MER5A1 DNA MER1_type -27 139 80 1 1405 225 283 33 0 chr12 107597543 107597603 -13659927 + MER53 DNA hAT 6 67 -126 1 1405 263 419 27 27 chr12 107597691 107597875 -13659655 - MLT1I LTR MaLR -188 223 40 1 1405 442 261 160 49 chr12 107599413 107599578 -13657952 - MTE2a LTR MaLR -22 357 159 1 1405 324 289 108 42 chr12 107599589 107599755 -13657775 + L1M4b LINE L1 1761 1937 -5397 1 1405 443 183 0 40 chr12 107599757 107599817 -13657713 + polypurine Low_complexity Low_complexity 1 58 0 2 1405 3496 148 41 41 chr12 107599817 107600445 -13657085 + RLTR5_Mm LTR ERV1 1 628 0 2 1405 966 172 0 16 chr12 107600445 107600606 -13656924 + polypurine Low_complexity Low_complexity 1 158 0 2 1405 1123 107 0 11 chr12 107600606 107600786 -13656744 + (GGA)n Simple_repeat Simple_repeat 1 178 0 2 1405 966 164 0 0 chr12 107600786 107600869 -13656661 + polypurine Low_complexity Low_complexity 94 176 0 2 1405 615 327 33 19 chr12 107600869 107601140 -13656390 - MTD LTR MaLR -144 275 1 2 1405 226 188 0 40 chr12 107601606 107601656 -13655874 + MER103 DNA DNA 56 103 -63 2 1405 467 278 54 36 chr12 107602420 107602618 -13654912 - B3A SINE B2 0 195 1 2 1405 251 244 33 99 chr12 107602782 107602873 -13654657 - MLT1K LTR MaLR -57 538 454 2 1405 856 142 214 33 chr12 107603026 107603208 -13654322 + B3 SINE B2 2 216 0 2 1405 423 368 50 75 chr12 107604699 107604885 -13652645 - Tigger5 DNA MER2_type -2169 237 47 2 1405 445 248 19 58 chr12 107604885 107605039 -13652491 + RSINE1 SINE B4 2 149 -16 2 1405 423 368 50 75 chr12 107605039 107605093 -13652437 - Tigger5 DNA MER2_type -2360 46 3 2 1405 318 310 60 138 chr12 107605181 107605478 -13652052 - MLT2B4 LTR ERVL -266 288 9 2 1405 561 144 0 48 chr12 107605844 107606033 -13651497 + CT-rich Low_complexity Low_complexity 1 180 0 2 1405 412 174 40 10 chr12 107606036 107606135 -13651395 + (TCTCTG)n Simple_repeat Simple_repeat 4 105 0 2 1405 318 26 0 0 chr12 107606138 107606177 -13651353 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1405 391 227 113 43 chr12 107606195 107606310 -13651220 - RSINE1 SINE B4 -40 125 3 2 1405 535 314 104 60 chr12 107606759 107607094 -13650436 - ORR1E LTR MaLR 0 359 10 2 1405 913 50 41 0 chr12 107607233 107607354 -13650176 + B1_Mm SINE Alu 21 146 -1 2 1405 733 317 49 11 chr12 107607457 107607722 -13649808 + RMER5 LTR ERV1 226 500 -34 2 1405 441 274 115 88 chr12 107608737 107608929 -13648601 + B3A SINE B2 1 197 -1 2 1405 640 202 6 18 chr12 107609426 107609597 -13647933 + (TGGG)n Simple_repeat Simple_repeat 4 172 0 2 175 714 44 0 0 chr12 107610044 107610134 -13647396 + (TC)n Simple_repeat Simple_repeat 1 90 0 2 1406 342 250 0 0 chr12 107610361 107610433 -13647097 - MIR SINE MIR -8 254 183 2 1406 23 33 0 0 chr12 107610553 107610583 -13646947 + AT_rich Low_complexity Low_complexity 1 30 0 2 1406 578 236 28 28 chr12 107611180 107611324 -13646206 + ID_B1 SINE B4 70 213 -11 2 1406 384 22 0 0 chr12 107611324 107611369 -13646161 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 2 1406 575 303 7 7 chr12 107611546 107611689 -13645841 + RSINE1 SINE B4 1 143 -22 2 1406 333 0 0 0 chr12 107611803 107611840 -13645690 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1406 239 140 0 20 chr12 107612087 107612138 -13645392 + CT-rich Low_complexity Low_complexity 1 50 0 2 1406 262 267 0 16 chr12 107613200 107613261 -13644269 + L2b LINE L2 3308 3367 -8 2 1406 221 119 24 0 chr12 107613586 107613628 -13643902 + (TCC)n Simple_repeat Simple_repeat 2 44 0 2 1406 234 0 0 0 chr12 107616449 107616475 -13641055 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1406 480 18 0 0 chr12 107616931 107616988 -13640542 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1406 255 31 0 0 chr12 107618549 107618581 -13638949 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1406 736 249 150 10 chr12 107618598 107618805 -13638725 - B4 SINE B4 -13 279 44 2 1406 702 35 0 0 chr12 107619083 107619168 -13638362 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 1406 230 0 0 32 chr12 107619168 107619198 -13638332 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1406 459 0 0 0 chr12 107619251 107619302 -13638228 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1406 226 261 0 0 chr12 107620226 107620272 -13637258 + AmnSINE1 SINE SINE 510 555 -20 2 1406 197 274 232 0 chr12 107621427 107621522 -13636008 - MIRc SINE MIR -117 151 35 2 1406 857 268 22 37 chr12 107623089 107623357 -13634173 + B4A SINE B4 2 265 -27 2 1406 230 115 19 0 chr12 107623376 107623428 -13634102 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 2 1406 231 177 0 0 chr12 107623445 107623507 -13634023 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1406 246 214 0 0 chr12 107623512 107623568 -13633962 + (CAGA)n Simple_repeat Simple_repeat 1 56 0 2 1406 294 195 0 0 chr12 107623578 107623665 -13633865 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1406 201 279 0 0 chr12 107623682 107623761 -13633769 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1406 658 159 11 11 chr12 107623761 107623939 -13633591 + (CAGA)n Simple_repeat Simple_repeat 1 178 0 2 1406 405 0 0 0 chr12 107623939 107623984 -13633546 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1406 383 289 83 26 chr12 107624182 107624338 -13633192 - Tigger14a DNA MER2_type -44 280 116 2 1406 258 256 12 35 chr12 107624655 107624740 -13632790 + CT-rich Low_complexity Low_complexity 2 84 0 2 1406 265 247 12 24 chr12 107624789 107624872 -13632658 + CT-rich Low_complexity Low_complexity 2 83 0 2 1406 581 153 0 14 chr12 107625259 107625398 -13632132 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 2 1406 244 377 0 0 chr12 107625405 107625474 -13632056 - ID2 SINE ID -13 70 2 2 1406 182 317 122 40 chr12 107625741 107625889 -13631641 + L3b LINE CR1 191 350 -132 2 1406 256 0 50 25 chr12 107626711 107626751 -13630779 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1406 194 313 114 8 chr12 107626810 107626942 -13630588 + L2c LINE L2 3238 3383 -4 2 1406 310 319 0 50 chr12 107626945 107627044 -13630486 + PB1D7 SINE Alu 9 102 -18 2 1406 288 0 0 0 chr12 107628511 107628543 -13628987 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1406 536 311 80 5 chr12 107628640 107628664 -13628866 - B4A SINE B4 -61 231 207 2 1406 1008 86 0 0 chr12 107628664 107628804 -13628726 + (TC)n Simple_repeat Simple_repeat 1 140 0 2 1406 536 311 80 5 chr12 107628804 107628992 -13628538 - B4A SINE B4 -86 206 5 2 1406 251 269 126 63 chr12 107629058 107629185 -13628345 - MIR SINE MIR -112 150 16 2 1406 477 237 8 26 chr12 107629369 107629486 -13628044 + PB1D10 SINE Alu 1 115 -2 2 1406 542 373 109 36 chr12 107630242 107630899 -13626631 + MLT1H1-int LTR MaLR 602 1444 -45 2 1406 535 341 120 46 chr12 107630941 107631399 -13626131 + MLT1H1 LTR MaLR 11 502 -53 2 1406 243 0 0 0 chr12 107631971 107631998 -13625532 + (TTG)n Simple_repeat Simple_repeat 3 29 0 2 1406 470 304 8 16 chr12 107632002 107632129 -13625401 - ID_B1 SINE B4 -6 218 93 2 1406 189 0 0 0 chr12 107632229 107632250 -13625280 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1406 296 143 0 18 chr12 107632250 107632307 -13625223 + GA-rich Low_complexity Low_complexity 2 57 0 2 1406 1204 7 14 0 chr12 107632307 107632452 -13625078 + (GAGAA)n Simple_repeat Simple_repeat 5 151 0 2 1406 256 331 101 39 chr12 107632480 107632609 -13624921 - B4 SINE B4 -14 278 142 2 1406 186 238 159 0 chr12 107633523 107633586 -13623944 + MIRb SINE MIR 45 117 -151 2 1406 264 30 0 0 chr12 107633718 107633751 -13623779 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1406 327 104 0 0 chr12 107633751 107633799 -13623731 + (CCA)n Simple_repeat Simple_repeat 3 50 0 2 1406 1260 259 96 42 chr12 107633994 107634380 -13623150 + MTD LTR MaLR 13 419 0 2 1406 253 165 170 28 chr12 107634935 107635041 -13622489 + MER117 DNA MER1_type 67 187 -10 2 1406 1308 297 31 14 chr12 107638370 107638729 -13618801 - MTE2b LTR MaLR -12 367 3 2 1406 310 280 92 58 chr12 107638729 107638952 -13618578 + MIRb SINE MIR 28 264 -4 2 1406 643 203 0 22 chr12 107639099 107639280 -13618250 + (TATG)n Simple_repeat Simple_repeat 4 180 0 2 1406 243 218 0 0 chr12 107639315 107639370 -13618160 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1406 667 277 0 0 chr12 107639379 107639527 -13618003 - RSINE1 SINE B4 -5 160 13 2 1406 269 346 0 0 chr12 107640172 107640253 -13617277 + (CCCA)n Simple_repeat Simple_repeat 2 82 0 2 1406 489 17 0 0 chr12 107640256 107640314 -13617216 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1406 342 241 120 0 chr12 107640852 107640960 -13616570 + L1MCa LINE L1 1097 1217 -5291 2 1406 342 240 60 40 chr12 107641231 107641331 -13616199 + MLT1D LTR MaLR 33 134 -371 2 1406 296 258 16 0 chr12 107641333 107641395 -13616135 + Charlie12 DNA MER1_type 2808 2870 -3 2 1406 280 361 130 24 chr12 107641449 107641696 -13615834 + MLT1D LTR MaLR 188 460 -7 2 1406 268 306 18 0 chr12 107641757 107641842 -13615688 - MER33 DNA MER1_type -99 110 1 2 1406 259 269 93 28 chr12 107642140 107642247 -13615283 - MIRb SINE MIR -68 200 87 2 1406 237 211 0 0 chr12 107642250 107642302 -13615228 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1406 320 135 19 0 chr12 107642302 107642354 -13615176 - HAL1-3A_ME LINE L1 -830 2028 1976 2 1406 491 211 0 6 chr12 107642357 107642529 -13615001 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 1406 1240 285 22 0 chr12 107642542 107642816 -13614714 - B4A SINE B4 -2 290 11 2 1406 811 284 79 44 chr12 107643845 107643996 -13613534 - MTD LTR MaLR -91 316 152 2 1406 1658 197 43 32 chr12 107643996 107644369 -13613161 + ORR1C1 LTR MaLR 2 378 0 2 1406 811 285 85 51 chr12 107644369 107644524 -13613006 - MTD LTR MaLR -254 165 1 2 1406 986 112 0 7 chr12 107644641 107644785 -13612745 + URR1B DNA MER1_type 83 225 0 2 1406 1621 38 0 0 chr12 107644803 107644989 -13612541 + L1Md_A LINE L1 5401 5586 -297 2 1406 8523 32 8 0 chr12 107644989 107645977 -13611553 + L1Md_A LINE L1 5587 6582 0 2 1406 1066 97 14 0 chr12 107645988 107646132 -13611398 + B1_Mus1 SINE Alu 2 147 -1 2 1406 1153 38 7 15 chr12 107646746 107647158 -13610372 + (TCTA)n Simple_repeat Simple_repeat 1 408 0 2 1406 1296 62 22 16 chr12 107647176 107648038 -13609492 + (TCTA)n Simple_repeat Simple_repeat 1 867 0 2 1406 560 250 47 8 chr12 107648038 107648167 -13609363 - RSINE1 SINE B4 -6 159 26 2 1406 296 333 72 7 chr12 107649297 107649436 -13608094 + MIRb SINE MIR 40 187 -81 2 1406 675 190 0 0 chr12 107650227 107650506 -13607024 + (TG)n Simple_repeat Simple_repeat 1 279 0 2 1406 1239 273 33 18 chr12 107650524 107650860 -13606670 - ORR1D2 LTR MaLR 0 370 30 2 1406 1059 91 0 0 chr12 107650884 107651059 -13606471 + (CA)n Simple_repeat Simple_repeat 2 176 0 2 1406 249 271 91 27 chr12 107651125 107651235 -13606295 - MLT1J1 LTR MaLR -305 139 23 3 1406 607 289 58 19 chr12 107652184 107652392 -13605138 - MLT1A0 LTR MaLR -10 355 140 3 1406 669 314 49 0 chr12 107652684 107652869 -13604661 - B4 SINE B4 -98 194 1 3 1406 426 265 68 8 chr12 107652878 107653011 -13604519 - MLT1A0 LTR MaLR -215 150 10 3 1406 1733 184 21 52 chr12 107653734 107653897 -13603633 + ORR1D1 LTR MaLR 1 163 -211 3 1406 540 42 0 0 chr12 107653897 107653968 -13603562 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1406 1733 184 21 52 chr12 107653968 107653995 -13603535 + ORR1D1 LTR MaLR 164 190 -184 3 1406 798 109 0 0 chr12 107653995 107654132 -13603398 + (TC)n Simple_repeat Simple_repeat 2 138 0 3 1406 1733 184 21 52 chr12 107654132 107654324 -13603206 + ORR1D1 LTR MaLR 191 372 -2 3 1406 1724 168 127 21 chr12 107655063 107655441 -13602089 - MTC LTR MaLR 0 421 4 3 1406 300 353 66 70 chr12 107655694 107655953 -13601577 - L1MD1 LINE L1 -64 6295 6038 3 1406 545 309 139 18 chr12 107655961 107656241 -13601289 - Lx8 LINE L1 -4 7469 7156 3 1406 402 341 18 23 chr12 107656322 107656541 -13600989 - L1MD1 LINE L1 -275 5967 5750 3 1406 598 282 93 15 chr12 107656871 107657044 -13600486 + MTE2a LTR MaLR 139 312 -67 3 1406 585 0 0 0 chr12 107657044 107657109 -13600421 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 3 1406 598 282 93 15 chr12 107657109 107657140 -13600390 + MTE2a LTR MaLR 313 358 -21 3 1406 1638 238 76 11 chr12 107658171 107658553 -13598977 - MTD LTR MaLR -12 407 1 3 1406 334 246 26 26 chr12 107658919 107659036 -13598494 + GA-rich Low_complexity Low_complexity 5 121 0 3 1406 325 349 7 0 chr12 107659517 107659663 -13597867 + Lx9 LINE L1 7207 7353 -291 3 1406 1586 196 10 32 chr12 107661570 107661881 -13595649 - MTD LTR MaLR 0 419 116 3 1406 257 313 12 24 chr12 107662122 107662207 -13595323 + MER58A DNA MER1_type 4 87 -137 3 1406 690 239 156 68 chr12 107662264 107662631 -13594899 + RMER15 LTR ERVL 37 513 -62 3 1406 231 305 0 41 chr12 107663946 107664069 -13593461 + C-rich Low_complexity Low_complexity 3 120 0 3 1406 286 295 0 74 chr12 107664148 107664296 -13593234 + C-rich Low_complexity Low_complexity 1 137 0 3 1406 671 229 26 13 chr12 107665103 107665258 -13592272 + MT2A LTR ERVL 2 158 -375 3 1406 396 0 0 0 chr12 107665332 107665376 -13592154 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1406 999 73 0 0 chr12 107665728 107665878 -13591652 + (TC)n Simple_repeat Simple_repeat 1 150 0 3 1406 446 343 11 0 chr12 107666515 107666690 -13590840 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 3 1406 1211 125 6 0 chr12 107666712 107667058 -13590472 + (TGGA)n Simple_repeat Simple_repeat 1 348 0 3 1406 377 183 21 0 chr12 107667069 107667162 -13590368 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 3 1406 198 318 112 65 chr12 107667517 107667749 -13589781 + L2b LINE L2 3133 3375 0 3 1406 246 105 0 0 chr12 107669024 107669062 -13588468 + (GGGGA)n Simple_repeat Simple_repeat 5 42 0 3 1406 477 76 0 0 chr12 107669176 107669242 -13588288 + (TGAA)n Simple_repeat Simple_repeat 2 67 0 3 1406 328 365 30 40 chr12 107669711 107669911 -13587619 + Tigger9b DNA MER2_type 287 484 -140 3 1406 316 301 18 9 chr12 107669915 107670029 -13587501 - L1MB5 LINE L1 -6 6168 6054 3 1406 414 0 0 0 chr12 107670085 107670131 -13587399 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1406 212 266 71 97 chr12 107670386 107670424 -13587106 - B2_Mm1a SINE B2 -1 192 156 3 1406 744 43 0 0 chr12 107670424 107670516 -13587014 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 3 1406 212 266 71 97 chr12 107670516 107670533 -13586997 - B2_Mm1a SINE B2 -38 155 2 3 1406 578 307 21 0 chr12 107670533 107670673 -13586857 - RSINE1 SINE B4 -20 145 3 3 1406 2632 60 138 14 chr12 107670703 107671059 -13586471 - MTB LTR MaLR 0 400 1 3 1406 234 286 117 8 chr12 107671399 107671519 -13586011 + L1MC3 LINE L1 7625 7757 -28 3 1406 703 307 135 13 chr12 107671524 107671917 -13585613 + Lx8 LINE L1 7026 7466 -7 3 1406 699 12 0 0 chr12 107672339 107672419 -13585111 + (GAA)n Simple_repeat Simple_repeat 2 81 0 3 1406 254 185 0 18 chr12 107672879 107672934 -13584596 + C-rich Low_complexity Low_complexity 3 56 0 3 1406 256 229 153 20 chr12 107673002 107673100 -13584430 - MIR3 SINE MIR -96 112 2 3 1406 227 352 46 9 chr12 107673187 107673296 -13584234 - MIR SINE MIR -89 173 61 3 1406 297 305 22 79 chr12 107673538 107673677 -13583853 + B4A SINE B4 9 139 -153 3 1406 297 295 0 146 chr12 107673722 107673825 -13583705 + RSINE1 SINE B4 78 165 0 3 1406 663 201 0 0 chr12 107673825 107673979 -13583551 + (CA)n Simple_repeat Simple_repeat 1 154 0 3 1406 21 0 0 0 chr12 107674148 107674169 -13583361 + AT_rich Low_complexity Low_complexity 1 21 0 3 1406 430 136 0 15 chr12 107674323 107674390 -13583140 + B1_Mur1 SINE Alu 81 146 -3 3 1406 201 116 44 44 chr12 107674392 107674437 -13583093 + A-rich Low_complexity Low_complexity 5 49 0 3 1406 554 242 182 48 chr12 107674475 107674640 -13582890 + B3A SINE B2 12 198 0 3 1406 2449 92 6 0 chr12 107674840 107675165 -13582365 + ORR1A2 LTR MaLR 1 327 0 3 1406 844 345 62 40 chr12 107675394 107675893 -13581637 - MT2A LTR ERVL -5 528 19 3 1406 667 244 77 16 chr12 107675973 107676156 -13581374 + B3 SINE B2 1 194 -22 3 1406 518 292 47 60 chr12 107676219 107676434 -13581096 + MER2 DNA MER2_type 72 283 -62 3 1406 552 318 131 15 chr12 107676551 107676810 -13580720 - RMER15 LTR ERVL -12 563 275 3 1406 277 235 128 39 chr12 107676893 107676995 -13580535 - RMER15 LTR ERVL -464 111 1 3 1406 426 101 0 0 chr12 107677502 107677571 -13579959 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1406 1771 221 24 63 chr12 107678352 107678763 -13578767 - MTD LTR MaLR -14 405 11 3 1406 2658 68 8 21 chr12 107679441 107679815 -13577715 - MTB_Mm LTR MaLR -3 404 36 3 1406 235 229 19 19 chr12 107680019 107680126 -13577404 + (TATG)n Simple_repeat Simple_repeat 4 110 0 3 1406 841 316 18 18 chr12 107680143 107680423 -13577107 - B4A SINE B4 -8 284 5 3 1406 276 340 75 0 chr12 107680439 107680533 -13576997 - PB1D10 SINE Alu -7 110 10 3 1406 228 254 69 14 chr12 107680746 107680818 -13576712 - MLT1J LTR MaLR -360 152 77 3 1406 326 312 154 41 chr12 107682245 107682512 -13575018 + L2a LINE L2 3130 3426 0 3 1406 978 95 0 0 chr12 107682576 107682724 -13574806 + (GGGAGA)n Simple_repeat Simple_repeat 3 150 0 3 1406 216 0 0 0 chr12 107683256 107683280 -13574250 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1406 1133 70 28 0 chr12 107683721 107683864 -13573666 + B1_Mus1 SINE Alu 2 148 0 3 1406 911 189 0 4 chr12 107683891 107684121 -13573409 + A-rich Low_complexity Low_complexity 1 228 0 3 1406 214 100 75 0 chr12 107684215 107684255 -13573275 + A-rich Low_complexity Low_complexity 2 44 0 3 1406 637 304 34 101 chr12 107684486 107684874 -13572656 + MTEb LTR MaLR 6 367 -12 3 1406 369 321 26 9 chr12 107685054 107685167 -13572363 - ORR1E LTR MaLR -238 121 7 3 1406 1549 214 12 88 chr12 107685845 107686245 -13571285 - ORR1D2 LTR MaLR 0 370 1 3 1406 229 297 66 26 chr12 107686573 107686649 -13570881 + MLT1A1 LTR MaLR 318 396 -12 3 1406 197 340 28 19 chr12 107686827 107686935 -13570595 - L2c LINE L2 -253 3134 3026 3 1406 296 319 0 87 chr12 107687260 107687387 -13570143 - B4 SINE B4 -150 142 27 3 1406 259 318 91 0 chr12 107687567 107687677 -13569853 + MER74C LTR ERVL 86 205 -255 3 1406 470 343 40 54 chr12 107687848 107688070 -13569460 + ID_B1 SINE B4 3 221 -3 3 1406 405 0 0 0 chr12 107688457 107688502 -13569028 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 3 1406 185 111 0 0 chr12 107688567 107688594 -13568936 + MIRc SINE MIR 220 246 -22 3 1406 306 302 28 92 chr12 107689129 107689271 -13568259 - MIRc SINE MIR -120 148 16 3 1406 1089 269 75 75 chr12 107689271 107689673 -13567857 - MTD LTR MaLR 0 419 18 3 1406 315 362 114 11 chr12 107689899 107690075 -13567455 - MLT1A0 LTR MaLR -21 344 151 3 1406 422 363 44 62 chr12 107690288 107690597 -13566933 - MLT1G LTR MaLR -165 390 80 3 1406 273 280 60 70 chr12 107690609 107690709 -13566821 - MLT1D LTR MaLR -127 378 263 3 1406 285 98 0 0 chr12 107690819 107690860 -13566670 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 3 1406 1170 100 0 0 chr12 107690891 107691071 -13566459 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 3 1406 243 125 0 0 chr12 107691429 107691469 -13566061 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1406 206 207 17 0 chr12 107692787 107692845 -13564685 + CT-rich Low_complexity Low_complexity 4 62 0 3 1406 576 183 47 0 chr12 107692857 107693026 -13564504 + CT-rich Low_complexity Low_complexity 2 178 0 3 1406 438 258 7 101 chr12 107693224 107693362 -13564168 - ID_B1 SINE B4 -10 214 90 3 1406 378 0 0 0 chr12 107693398 107693440 -13564090 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1406 311 0 0 25 chr12 107693947 107693987 -13563543 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 3 1406 1225 59 0 0 chr12 107693992 107694145 -13563385 - B2_Mm2 SINE B2 -41 154 2 3 1406 370 260 76 9 chr12 107694235 107694340 -13563190 + RSINE1 SINE B4 12 123 -42 3 1406 485 218 20 10 chr12 107694413 107694515 -13563015 + PB1D10 SINE Alu 9 111 -6 3 1406 744 305 68 24 chr12 107695204 107695456 -13562074 - ORR1D2 LTR MaLR -83 287 25 3 1406 549 110 0 0 chr12 107695480 107695562 -13561968 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 3 1406 475 139 19 65 chr12 107695564 107695672 -13561858 - Lx6 LINE L1 0 7460 7358 3 1406 218 259 236 21 chr12 107695862 107696006 -13561524 - MIRb SINE MIR -89 179 13 3 1406 261 169 0 0 chr12 107696047 107696106 -13561424 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1406 669 244 254 9 chr12 107696106 107696338 -13561192 - B4 SINE B4 0 292 4 3 1406 196 227 123 74 chr12 107696734 107696815 -13560715 + L2b LINE L2 3242 3326 -49 3 1406 452 200 8 0 chr12 107698270 107698395 -13559135 + GA-rich Low_complexity Low_complexity 1 126 0 3 1406 332 216 48 0 chr12 107698413 107698511 -13559019 + PB1D10 SINE Alu 12 120 0 3 1406 293 118 20 0 chr12 107698622 107698673 -13558857 + (GGA)n Simple_repeat Simple_repeat 3 54 0 3 1406 256 305 80 51 chr12 107699023 107699161 -13558369 - LTR33 LTR ERVL -116 399 258 3 1406 1356 242 49 78 chr12 107699959 107700344 -13557186 + MTE2a LTR MaLR 6 379 0 4 1406 777 51 0 0 chr12 107701481 107701579 -13555951 + (TCCC)n Simple_repeat Simple_repeat 4 101 0 4 1406 518 336 66 29 chr12 107701627 107701869 -13555661 - B4A SINE B4 0 292 42 4 1406 310 319 0 89 chr12 107702082 107702206 -13555324 + Charlie15a DNA MER1_type 95 207 -17 4 1406 296 242 16 0 chr12 107702221 107702283 -13555247 + ID_B1 SINE B4 90 152 -72 4 1406 698 93 9 0 chr12 107702310 107702418 -13555112 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 4 1406 188 67 0 32 chr12 107702854 107702885 -13554645 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 4 1406 1787 173 37 38 chr12 107703924 107704166 -13553364 + RMER17C LTR ERVK 2 427 -382 4 1406 1326 78 0 0 chr12 107704166 107704346 -13553184 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1406 288 0 0 0 chr12 107704348 107704380 -13553150 + (TCCCC)n Simple_repeat Simple_repeat 4 35 0 4 1406 1787 153 25 40 chr12 107704380 107704567 -13552963 + RMER17C LTR ERVK 198 388 -22 4 1406 1121 89 6 0 chr12 107705038 107705206 -13552324 + (TCCA)n Simple_repeat Simple_repeat 4 172 0 4 1406 392 342 20 13 chr12 107705719 107705870 -13551660 - B4A SINE B4 -140 152 1 4 1406 243 333 69 92 chr12 107705894 107706112 -13551418 + L2b LINE L2 3122 3334 -41 4 1406 515 189 0 32 chr12 107706871 107706964 -13550566 - B1_Mur4 SINE Alu -7 143 54 4 1406 231 299 62 49 chr12 107706912 107706993 -13550537 - MT2B LTR ERVL -344 257 176 4 1406 213 39 0 0 chr12 107707401 107707427 -13550103 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1406 340 314 61 42 chr12 107708196 107708409 -13549121 + MLT1E LTR MaLR 408 624 -29 4 1406 477 300 150 61 chr12 107708468 107708748 -13548782 + MLT1A1 LTR MaLR 25 329 -79 4 1406 619 302 7 14 chr12 107708813 107708954 -13548576 + RSINE1 SINE B4 26 165 0 4 1406 192 77 0 0 chr12 107709651 107709677 -13547853 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 4 1406 197 65 32 0 chr12 107710698 107710729 -13546801 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 4 1406 299 197 0 90 chr12 107710730 107710808 -13546722 - ID_B1 SINE B4 0 224 154 4 1406 618 48 23 46 chr12 107710738 107710825 -13546705 - B1_Mus2 SINE Alu -4 143 59 4 1406 842 160 20 20 chr12 107711352 107711366 -13546164 - B1_Mus2 SINE Alu 0 147 135 4 1406 213 39 0 0 chr12 107711366 107711392 -13546138 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 4 1406 842 160 20 20 chr12 107711392 107711524 -13546006 - B1_Mus2 SINE Alu -13 134 1 4 1406 247 254 17 0 chr12 107711767 107711826 -13545704 - MIRm SINE MIR -110 166 107 4 1406 705 245 147 23 chr12 107712163 107712422 -13545108 - B4A SINE B4 0 292 2 4 1406 25 0 0 0 chr12 107712494 107712519 -13545011 + AT_rich Low_complexity Low_complexity 1 25 0 4 1406 216 97 0 0 chr12 107713624 107713655 -13543875 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1406 396 0 0 0 chr12 107713995 107714039 -13543491 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1406 23 0 0 0 chr12 107714582 107714605 -13542925 + AT_rich Low_complexity Low_complexity 1 23 0 4 1406 327 250 40 40 chr12 107715096 107715221 -13542309 + MER96B DNA hAT 57 181 -236 4 1406 234 0 0 0 chr12 107715532 107715558 -13541972 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1406 549 0 0 0 chr12 107716347 107716408 -13541122 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1406 22 35 0 0 chr12 107718340 107718369 -13539161 + AT_rich Low_complexity Low_complexity 1 29 0 4 1406 185 217 10 42 chr12 107721379 107721475 -13536055 + CT-rich Low_complexity Low_complexity 3 95 0 4 1406 22 0 0 0 chr12 107721722 107721744 -13535786 + AT_rich Low_complexity Low_complexity 1 22 0 4 1406 216 170 0 0 chr12 107721768 107721821 -13535709 + A-rich Low_complexity Low_complexity 3 55 0 4 1406 314 266 136 61 chr12 107722366 107722498 -13535032 - B4A SINE B4 -148 144 3 4 1406 325 0 22 22 chr12 107723093 107723139 -13534391 + (CAA)n Simple_repeat Simple_repeat 2 47 0 4 1406 252 0 0 0 chr12 107723820 107723848 -13533682 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1406 1138 102 0 0 chr12 107723858 107724005 -13533525 - B1_Mus1 SINE Alu 0 148 2 4 1406 1191 191 5 5 chr12 107724029 107724239 -13533291 - B3 SINE B2 -5 211 2 4 1406 23 0 0 0 chr12 107724770 107724793 -13532737 + AT_rich Low_complexity Low_complexity 1 23 0 4 1406 1092 230 154 54 chr12 107725104 107725527 -13532003 - RMER5 LTR ERV1 -27 507 43 4 1406 226 273 0 0 chr12 107725574 107725629 -13531901 + CT-rich Low_complexity Low_complexity 3 57 0 4 1406 1228 172 9 14 chr12 107725803 107726021 -13531509 + URR1B DNA MER1_type 9 225 0 4 1406 579 315 44 95 chr12 107727386 107727660 -13529870 + B4A SINE B4 27 286 -6 4 1406 302 288 57 57 chr12 107727858 107727998 -13529532 + L1MC3 LINE L1 6507 6646 -1139 4 1406 342 0 0 0 chr12 107728352 107728390 -13529140 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1406 369 0 0 0 chr12 107728390 107728430 -13529100 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1406 486 202 0 0 chr12 107728544 107728717 -13528813 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1406 722 166 0 6 chr12 107728734 107729057 -13528473 + (TG)n Simple_repeat Simple_repeat 1 320 0 4 1406 317 275 0 0 chr12 107729331 107729400 -13528130 - ID4 SINE ID -13 70 2 4 1406 360 0 0 0 chr12 107729412 107729452 -13528078 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1406 458 278 44 15 chr12 107729456 107729591 -13527939 - B1F1 SINE Alu -10 139 1 4 1406 318 333 85 0 chr12 107729727 107729868 -13527662 + L1MDa LINE L1 2377 2529 -4104 4 1406 764 241 51 20 chr12 107731345 107731540 -13525990 + B3 SINE B2 1 201 -15 4 1406 324 174 59 29 chr12 107731541 107731823 -13525707 + (CA)n Simple_repeat Simple_repeat 1 290 0 4 1406 234 172 67 33 chr12 107731835 107731925 -13525605 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 1406 482 113 52 9 chr12 107731959 107732075 -13525455 + (CA)n Simple_repeat Simple_repeat 1 121 0 4 1406 882 252 0 33 chr12 107732372 107732585 -13524945 + B3 SINE B2 11 216 0 4 1406 986 283 234 0 chr12 107732550 107732935 -13524595 - RCHARR1 DNA MER1_type -499 475 1 4 1406 2512 75 0 0 chr12 107733302 107733621 -13523909 + ORR1A2 LTR MaLR 1 319 -8 4 1406 289 238 188 0 chr12 107734821 107734901 -13522629 - MLT1A1 LTR MaLR -168 240 146 4 1406 336 205 0 0 chr12 107736809 107736864 -13520666 + polypyrimidine Low_complexity Low_complexity 25 79 0 4 1406 417 39 0 0 chr12 107736864 107736915 -13520615 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 4 1406 336 205 0 0 chr12 107736915 107736937 -13520593 + polypyrimidine Low_complexity Low_complexity 3 24 0 4 1406 555 90 0 0 chr12 107736955 107737033 -13520497 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1406 549 247 60 27 chr12 107737036 107737186 -13520344 - B3A SINE B2 -42 156 2 4 1406 4658 197 26 26 chr12 107737463 107738484 -13519046 - Lx5 LINE L1 0 7050 6030 4 1406 3845 102 45 16 chr12 107738486 107738588 -13518942 + L1_Mur2 LINE L1 4192 4288 -1589 4 1406 1309 126 0 5 chr12 107738588 107738779 -13518751 + B2_Mm2 SINE B2 1 190 -5 4 1406 3845 102 45 16 chr12 107738779 107739301 -13518229 + L1_Mur2 LINE L1 4289 4834 -1043 4 1406 445 283 0 94 chr12 107739722 107739882 -13517648 + ID_B1 SINE B4 80 224 0 4 1406 332 252 228 5 chr12 107740183 107740236 -13517294 - L1M2 LINE L1 -789 5354 5279 4 1406 486 75 0 0 chr12 107740236 107740303 -13517227 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1406 332 252 228 5 chr12 107740303 107740460 -13517070 - L1M2 LINE L1 -865 5278 5097 4 1406 363 23 0 0 chr12 107740579 107740623 -13516907 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 175 844 154 25 18 chr12 107740968 107741244 -13516286 + (TCTA)n Simple_repeat Simple_repeat 1 277 0 4 1407 449 307 89 18 chr12 107741413 107741582 -13515948 - MIR SINE MIR -69 193 13 4 1407 219 139 0 0 chr12 107742500 107742536 -13514994 + (TTG)n Simple_repeat Simple_repeat 3 38 0 4 1407 255 274 0 0 chr12 107744051 107744113 -13513417 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1407 243 88 0 0 chr12 107744144 107744178 -13513352 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1407 314 191 26 52 chr12 107744518 107744788 -13512742 + GA-rich Low_complexity Low_complexity 1 262 0 4 1407 696 35 0 0 chr12 107744797 107744884 -13512646 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 4 1407 264 30 0 0 chr12 107744897 107744930 -13512600 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 4 1407 214 148 18 18 chr12 107744933 107744988 -13512542 + GA-rich Low_complexity Low_complexity 2 56 0 4 1407 195 319 0 28 chr12 107745932 107746003 -13511527 - L2b LINE L2 -72 3303 3235 4 1407 315 71 0 0 chr12 107748069 107748111 -13509419 + (GGA)n Simple_repeat Simple_repeat 1 42 0 4 1407 224 77 26 0 chr12 107748355 107748394 -13509136 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 1407 719 307 5 35 chr12 107748406 107748605 -13508925 + B3 SINE B2 23 215 -1 4 1407 335 23 23 0 chr12 107748609 107748653 -13508877 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1407 200 213 0 16 chr12 107748754 107748816 -13508714 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1407 426 234 6 11 chr12 107748869 107749046 -13508484 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 1407 411 250 11 13 chr12 107749064 107749309 -13508221 + (CA)n Simple_repeat Simple_repeat 1 244 0 4 1407 1297 7 7 0 chr12 107749309 107749455 -13508075 + B1_Mus1 SINE Alu 2 148 0 4 1407 247 287 8 34 chr12 107749455 107749509 -13508021 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1407 441 286 14 28 chr12 107749631 107749775 -13507755 - Lx8 LINE L1 -178 7295 7154 4 1407 327 333 46 37 chr12 107750960 107751193 -13506337 - HAL1-3A_ME LINE L1 -421 2437 2284 4 1407 402 74 0 0 chr12 107751199 107751253 -13506277 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 4 1407 209 25 0 160 chr12 107751467 107751611 -13505919 + (CACAG)n Simple_repeat Simple_repeat 5 125 0 4 1407 387 253 0 0 chr12 107751951 107752105 -13505425 + (TTAGGC)n Simple_repeat Simple_repeat 3 156 0 4 1407 425 221 78 16 chr12 107752393 107752522 -13505008 + B1F2 SINE Alu 4 140 -9 4 1407 302 298 12 0 chr12 107752576 107752660 -13504870 + B4 SINE B4 2 86 -206 4 1407 453 81 0 0 chr12 107754117 107754179 -13503351 + (ATGGTG)n Simple_repeat Simple_repeat 4 65 0 4 1407 240 35 0 0 chr12 107754708 107754737 -13502793 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1407 541 267 223 11 chr12 107754777 107755042 -13502488 - MLT1B LTR MaLR -66 324 4 4 1407 250 323 174 0 chr12 107755064 107755225 -13502305 - MLT-int LTR MaLR -55 1680 1492 5 1407 23 33 0 0 chr12 107755314 107755344 -13502186 + AT_rich Low_complexity Low_complexity 1 30 0 5 1407 207 284 44 15 chr12 107755717 107755785 -13501745 + L2a LINE L2 3354 3423 -3 5 1407 333 0 0 0 chr12 107756304 107756341 -13501189 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1407 480 35 0 0 chr12 107756363 107756421 -13501109 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1407 405 54 0 0 chr12 107757934 107757990 -13499540 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1407 565 239 0 11 chr12 107757990 107758172 -13499358 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1407 639 48 0 0 chr12 107758347 107758430 -13499100 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 5 1407 644 250 73 0 chr12 107758430 107758566 -13498964 - B1_Mus1 SINE Alu -1 147 2 5 1407 533 268 72 11 chr12 107758587 107758768 -13498762 - B3A SINE B2 -6 192 1 5 1407 1649 240 104 34 chr12 107758900 107759438 -13498092 + RMER17A2 LTR ERVK 1 576 -330 5 1407 542 75 12 0 chr12 107759817 107759897 -13497633 + (GA)n Simple_repeat Simple_repeat 1 81 0 5 1407 350 214 138 35 chr12 107760078 107760194 -13497336 - MLT1A LTR MaLR -11 363 236 5 1407 735 90 0 0 chr12 107760856 107760978 -13496552 + (TC)n Simple_repeat Simple_repeat 1 122 0 5 1407 652 260 85 0 chr12 107761209 107761386 -13496144 - B3A SINE B2 -6 192 1 5 1407 517 248 53 13 chr12 107761396 107761547 -13495983 + HAL1-2a_MD LINE L1 2346 2502 -522 5 1407 37 86 0 0 chr12 107762528 107762621 -13494909 + AT_rich Low_complexity Low_complexity 1 93 0 5 1407 1307 236 115 42 chr12 107762653 107763037 -13494493 + MTD LTR MaLR 8 419 0 5 1407 411 295 86 63 chr12 107763345 107763660 -13493870 - L1MD LINE L1 -2804 3342 3021 5 1407 501 121 0 0 chr12 107765353 107765436 -13492094 + (TG)n Simple_repeat Simple_repeat 1 83 0 5 1407 318 50 0 0 chr12 107766684 107766724 -13490806 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1407 288 70 0 0 chr12 107767797 107767840 -13489690 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1407 24 0 0 0 chr12 107768065 107768089 -13489441 + GC_rich Low_complexity Low_complexity 1 24 0 5 1407 1793 268 26 45 chr12 107768278 107768810 -13488720 + RMER5 LTR ERV1 13 534 0 5 1407 254 151 0 36 chr12 107769820 107769875 -13487655 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 5 1407 185 256 12 0 chr12 107770143 107770225 -13487305 + (CACCAT)n Simple_repeat Simple_repeat 4 86 0 5 1407 567 290 22 17 chr12 107770225 107770291 -13487239 + HAL1-2a_MD LINE L1 2347 2414 -610 5 1407 714 87 0 0 chr12 107770291 107770394 -13487136 + (TCC)n Simple_repeat Simple_repeat 2 104 0 5 1407 567 290 22 17 chr12 107770394 107770506 -13487024 + HAL1-2a_MD LINE L1 2415 2525 -499 5 1407 714 44 0 0 chr12 107771281 107771371 -13486159 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 5 1407 261 197 0 0 chr12 107771396 107771472 -13486058 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 5 1407 363 271 0 12 chr12 107771489 107771575 -13485955 + B4 SINE B4 168 252 -40 5 1407 468 35 0 0 chr12 107771606 107771664 -13485866 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1407 377 346 97 0 chr12 107772863 107773080 -13484450 + Lx8 LINE L1 7055 7292 -181 5 1407 264 254 226 18 chr12 107773113 107773334 -13484196 + RMER12 LTR ERVK 722 988 -334 5 1407 216 158 0 0 chr12 107773334 107773372 -13484158 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1407 225 0 0 0 chr12 107774118 107774143 -13483387 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1407 273 119 0 0 chr12 107774983 107775025 -13482505 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1407 1089 51 0 49 chr12 107775046 107775190 -13482340 - B1_Mm SINE Alu -9 138 2 5 1407 225 208 0 38 chr12 107775250 107775330 -13482200 + CT-rich Low_complexity Low_complexity 4 80 0 5 1407 801 184 0 0 chr12 107775343 107775501 -13482029 + CT-rich Low_complexity Low_complexity 3 160 0 5 1407 909 171 7 0 chr12 107775503 107775649 -13481881 - B1_Mus1 SINE Alu -1 147 1 5 1407 327 292 22 0 chr12 107775780 107775869 -13481661 + 5S rRNA rRNA 1 91 -30 5 1407 1180 321 128 41 chr12 107775877 107776539 -13480991 - Charlie1a DNA MER1_type -606 849 130 5 1407 237 286 0 38 chr12 107776581 107776661 -13480869 - L1MA6 LINE L1 -75 6225 6149 5 1407 446 0 19 0 chr12 107776690 107776744 -13480786 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1407 762 236 92 42 chr12 107776748 107777009 -13480521 - B4A SINE B4 -18 274 1 5 1407 694 195 278 0 chr12 107777180 107777349 -13480181 - B3 SINE B2 0 216 1 5 1407 225 321 13 63 chr12 107777349 107777588 -13479942 - L1MA6 LINE L1 -308 5983 5757 5 1407 255 61 0 0 chr12 107778088 107778121 -13479409 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 5 1407 677 261 74 11 chr12 107779073 107779263 -13478267 - B4 SINE B4 -89 203 2 5 1407 307 271 147 46 chr12 107779320 107779517 -13478013 - L1MB3 LINE L1 -55 6128 5912 5 1407 4133 167 31 39 chr12 107779675 107780418 -13477112 + Lx5 LINE L1 6290 7026 -24 5 1407 463 312 7 55 chr12 107780498 107780644 -13476886 + B1F SINE Alu 5 143 -6 5 1407 214 29 0 54 chr12 107780646 107780683 -13476847 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5 1407 326 204 45 8 chr12 107781831 107782078 -13475452 + (TG)n Simple_repeat Simple_repeat 1 255 0 5 1407 225 190 12 71 chr12 107782019 107782104 -13475426 + (GTGTG)n Simple_repeat Simple_repeat 1 80 0 5 1407 577 298 64 109 chr12 107782104 107782387 -13475143 - B4A SINE B4 0 292 23 5 1407 270 136 0 0 chr12 107782409 107782453 -13475077 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1407 2304 165 13 10 chr12 107782494 107782879 -13474651 + MTB_Mm LTR MaLR 22 407 0 5 1407 213 39 0 0 chr12 107782951 107782977 -13474553 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 5 1407 3356 194 52 90 chr12 107783120 107784112 -13473418 + RMER17B LTR ERVK 1 955 -3 5 1407 338 281 138 61 chr12 107784675 107784906 -13472624 - MIRb SINE MIR 0 268 20 5 1407 623 269 83 6 chr12 107785250 107785407 -13472123 - B3 SINE B2 -38 178 10 5 1407 325 252 47 8 chr12 107785407 107785501 -13472029 - Lx9 LINE L1 -30 7614 7516 5 1407 666 37 0 0 chr12 107785501 107785582 -13471948 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 1407 325 252 47 8 chr12 107785582 107785615 -13471915 - Lx9 LINE L1 -129 7515 7482 5 1407 982 236 175 13 chr12 107785656 107786206 -13471324 - Lx9 LINE L1 -139 7505 6867 5 1407 184 147 59 0 chr12 107787200 107787234 -13470296 + MIRc SINE MIR 60 95 -173 5 1407 446 284 34 47 chr12 107787348 107787496 -13470034 + RSINE1 SINE B4 3 148 -17 5 1407 272 261 53 92 chr12 107788309 107788411 -13469119 + MT2A LTR ERVL 5 104 -429 5 1407 2758 138 2 5 chr12 107788411 107788833 -13468697 + MTC LTR MaLR 1 421 0 5 1407 272 261 53 92 chr12 107788833 107788861 -13468669 + MT2A LTR ERVL 105 130 -403 5 1407 325 278 170 8 chr12 107788834 107789032 -13468498 + MTE2a LTR MaLR 126 359 -20 5 1407 453 110 0 0 chr12 107790258 107790331 -13467199 + (TGG)n Simple_repeat Simple_repeat 3 75 0 5 1407 1532 169 78 40 chr12 107790332 107790494 -13467036 + RMER17C LTR ERVK 1 184 -226 5 1407 1297 28 11 17 chr12 107790494 107790675 -13466855 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1407 1532 169 78 40 chr12 107790675 107790907 -13466623 + RMER17C LTR ERVK 185 410 0 5 1407 242 143 20 0 chr12 107790907 107790956 -13466574 + (TGG)n Simple_repeat Simple_repeat 3 52 0 5 1407 477 0 0 0 chr12 107791181 107791234 -13466296 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1407 656 249 226 21 chr12 107791328 107791791 -13465739 - Lx8 LINE L1 -5 7468 6890 5 1407 721 227 32 0 chr12 107792210 107792364 -13465166 - ID_B1 SINE B4 -4 220 62 5 1407 534 323 24 0 chr12 107792941 107793108 -13464422 - MIR SINE MIR -7 255 85 5 1407 323 275 10 52 chr12 107795147 107795243 -13462287 - MLT1B LTR MaLR -178 212 121 5 1407 870 251 0 5 chr12 107795264 107795460 -13462070 + B3 SINE B2 11 205 -11 5 1407 523 279 177 0 chr12 107795709 107795867 -13461663 + ID_B1 SINE B4 35 220 -4 5 1407 195 321 64 64 chr12 107797337 107797477 -13460053 + MIRb SINE MIR 106 245 -23 5 1407 967 274 68 38 chr12 107798146 107798514 -13459016 - MTEa LTR MaLR 0 379 1 5 1407 419 292 8 30 chr12 107799974 107800108 -13457422 + Tigger5 DNA MER2_type 2276 2406 0 5 1407 258 285 34 63 chr12 107800119 107800324 -13457206 + L1MEe LINE L1 1367 1608 -899 5 1407 1873 143 68 0 chr12 107800522 107800858 -13456672 + RLTR15 LTR ERVK 1 359 0 5 1407 31 26 0 0 chr12 107802974 107803012 -13454518 + AT_rich Low_complexity Low_complexity 1 38 0 5 1407 271 330 21 0 chr12 107803336 107803433 -13454097 + G-rich Low_complexity Low_complexity 6 104 0 5 1407 189 209 0 104 chr12 107804479 107804527 -13453003 + L3 LINE CR1 1135 1177 -3312 5 1407 202 337 24 59 chr12 107804605 107804690 -13452840 - L2c LINE L2 -6 3381 3300 5 1407 546 331 78 16 chr12 107804787 107804980 -13452550 - MER58A DNA MER1_type -1 223 19 5 1407 987 109 0 0 chr12 107804997 107805144 -13452386 + (TG)n Simple_repeat Simple_repeat 2 148 0 5 1407 180 0 0 0 chr12 107805173 107805193 -13452337 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1407 193 139 0 100 chr12 107806560 107806600 -13450930 - L3 LINE CR1 -3694 795 760 5 1407 2786 113 27 22 chr12 107807619 107808070 -13449460 - RLTR11B LTR ERVK 0 453 1 5 1407 469 248 157 8 chr12 107808070 107808204 -13449326 - MLT1A LTR MaLR -31 343 190 5 1407 604 233 0 0 chr12 107808254 107808370 -13449160 - PB1D10 SINE Alu -1 116 1 5 1407 1603 215 86 24 chr12 107808403 107808775 -13448755 - MTD LTR MaLR -15 404 10 5 1407 273 348 0 43 chr12 107808782 107808899 -13448631 - MLT1A LTR MaLR -221 144 33 5 1407 534 337 32 11 chr12 107809382 107809571 -13447959 + MLT1A0 LTR MaLR 1 193 -172 5 1407 234 246 0 15 chr12 107810250 107810316 -13447214 + C-rich Low_complexity Low_complexity 1 65 0 5 1407 273 341 107 15 chr12 107810394 107810525 -13447005 - Tigger5 DNA MER2_type -25 2381 2239 5 1407 373 281 27 61 chr12 107810590 107810738 -13446792 + B4A SINE B4 63 205 -87 5 1407 486 324 93 54 chr12 107810958 107811355 -13446175 + MLT1E1A LTR MaLR 137 524 -156 6 1407 2400 120 8 31 chr12 107812659 107813046 -13444484 - ORR1C1 LTR MaLR 0 378 1 6 1407 215 125 42 0 chr12 107813227 107813275 -13444255 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 6 1407 265 317 129 55 chr12 107813638 107813855 -13443675 + MLT1K LTR MaLR 331 563 -32 6 1407 697 320 43 86 chr12 107813900 107814204 -13443326 - B4A SINE B4 0 292 2 6 1407 307 283 88 86 chr12 107814311 107814485 -13443045 + MIRb SINE MIR 8 175 -33 6 1407 7745 166 60 101 chr12 107816160 107818189 -13439341 - ORR1B1-int LTR MaLR -191 1772 23 6 1407 2078 138 8 91 chr12 107818196 107818580 -13438950 - ORR1B1 LTR MaLR 0 394 43 6 1407 446 248 105 14 chr12 107818815 107818958 -13438572 - RSINE1 SINE B4 -1 164 9 6 1407 446 0 0 18 chr12 107819162 107819217 -13438313 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1407 292 319 132 66 chr12 107820135 107820393 -13437137 - MLT1A LTR MaLR -99 275 1 6 1407 630 147 0 0 chr12 107820512 107820641 -13436889 + (CA)n Simple_repeat Simple_repeat 2 130 0 6 1407 227 147 0 0 chr12 107821191 107821225 -13436305 - L1_Rod LINE L1 -13 5834 5801 6 1407 967 282 35 98 chr12 107821512 107821909 -13435621 + MTE2a LTR MaLR 6 377 -2 6 1407 1089 209 10 10 chr12 107823509 107823717 -13433813 - URR1B DNA MER1_type -16 209 2 6 1407 364 302 64 7 chr12 107824259 107824399 -13433131 - HAL1-2a_MD LINE L1 -532 2492 2345 6 1407 180 111 0 0 chr12 107824435 107824462 -13433068 + (TGG)n Simple_repeat Simple_repeat 3 29 0 6 1407 253 321 81 81 chr12 107824775 107825046 -13432484 - MLT2B4 LTR ERVL -167 297 27 6 1407 450 0 0 0 chr12 107825258 107825308 -13432222 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1407 1009 118 207 5 chr12 107826586 107826774 -13430756 + URR1A DNA MER1_type 1 226 0 6 1407 528 68 0 0 chr12 107826884 107826957 -13430573 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1407 406 250 50 0 chr12 107827782 107827882 -13429648 + PB1D10 SINE Alu 1 105 -12 6 1407 1162 233 47 4 chr12 107831834 107831876 -13425654 - B4 SINE B4 -27 265 218 6 1407 957 101 0 0 chr12 107831876 107832015 -13425515 + (CGTG)n Simple_repeat Simple_repeat 1 139 0 6 1407 1162 233 47 4 chr12 107832015 107832226 -13425304 - B4 SINE B4 -75 217 2 6 1407 835 317 53 84 chr12 107832453 107832533 -13424997 + L1MC2 LINE L1 5566 5646 -698 6 1407 192 40 0 0 chr12 107832533 107832558 -13424972 + (CCAA)n Simple_repeat Simple_repeat 4 28 0 6 1407 835 317 53 84 chr12 107832558 107832992 -13424538 + L1MC2 LINE L1 5647 6059 -285 6 1407 527 232 268 0 chr12 107832992 107833156 -13424374 - B3 SINE B2 -7 209 2 6 1407 835 317 53 84 chr12 107833156 107833322 -13424208 + L1MC2 LINE L1 6060 6226 -118 6 1407 468 136 38 19 chr12 107834001 107834106 -13423424 + CT-rich Low_complexity Low_complexity 3 109 0 6 1407 548 291 62 65 chr12 107834355 107834631 -13422899 - L1MA4 LINE L1 -411 5889 5615 6 1407 207 0 0 0 chr12 107836592 107836615 -13420915 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1407 183 80 0 0 chr12 107837036 107837061 -13420469 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1407 1274 270 64 6 chr12 107837129 107837487 -13420043 + MTE2a LTR MaLR 1 379 0 6 1407 289 231 50 9 chr12 107837495 107837580 -13419950 - B4A SINE B4 -205 87 1 6 1407 389 141 0 12 chr12 107837601 107837687 -13419843 + CT-rich Low_complexity Low_complexity 2 86 0 6 1407 773 253 6 39 chr12 107837692 107837873 -13419657 - B3A SINE B2 -16 182 8 6 1407 369 109 0 0 chr12 107838883 107838938 -13418592 + (CAAG)n Simple_repeat Simple_repeat 1 55 0 6 1407 342 315 9 9 chr12 107838992 107839101 -13418429 + B4 SINE B4 3 111 -181 6 1407 2848 30 0 0 chr12 107839102 107839438 -13418092 + ORR1A0 LTR MaLR 3 338 -8 6 1407 495 271 99 14 chr12 107839459 107839601 -13417929 + B4 SINE B4 131 284 -8 6 1407 372 43 0 0 chr12 107839955 107840001 -13417529 + (TTATA)n Simple_repeat Simple_repeat 4 49 0 6 1407 561 332 5 36 chr12 107840230 107840424 -13417106 + B4 SINE B4 2 189 -103 6 1407 1315 223 125 41 chr12 107840419 107840788 -13416742 - MTD LTR MaLR -5 414 15 6 1407 274 203 95 119 chr12 107840943 107841027 -13416503 + RSINE1 SINE B4 84 165 0 6 1407 539 29 14 0 chr12 107841042 107841111 -13416419 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1407 239 242 18 219 chr12 107841380 107841549 -13415981 - Charlie10 DNA MER1_type -564 2258 2124 6 1407 224 210 0 12 chr12 107841605 107841687 -13415843 + GA-rich Low_complexity Low_complexity 2 82 0 6 1407 202 226 74 19 chr12 107842337 107842391 -13415139 + MIR SINE MIR 88 144 -118 6 1407 1005 130 0 0 chr12 107843507 107844026 -13413504 + (TG)n Simple_repeat Simple_repeat 1 519 0 6 1407 405 300 43 87 chr12 107844026 107844126 -13413404 - B4 SINE B4 0 292 94 6 1407 624 168 0 9 chr12 107844126 107844234 -13413296 - PB1D9 SINE Alu -5 115 9 6 1407 439 294 85 31 chr12 107844241 107844439 -13413091 - B4A SINE B4 -78 214 1 6 1407 620 289 24 36 chr12 107845038 107845153 -13412377 + RSINE1 SINE B4 3 115 -50 6 1407 597 28 0 0 chr12 107845153 107845224 -13412306 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1407 620 289 24 36 chr12 107845224 107845273 -13412257 + RSINE1 SINE B4 116 165 0 6 1407 353 261 0 38 chr12 107845273 107845456 -13412074 + (CATA)n Simple_repeat Simple_repeat 3 178 0 6 1407 348 294 0 0 chr12 107845456 107845548 -13411982 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 1407 202 264 43 54 chr12 107845759 107845851 -13411679 - MIR SINE MIR -90 172 82 6 1407 342 0 0 0 chr12 107846197 107846235 -13411295 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1407 267 304 46 39 chr12 107847085 107847215 -13410315 + MIR SINE MIR 103 233 -29 6 1407 542 284 81 7 chr12 107847554 107847703 -13409827 + B4A SINE B4 14 173 -119 6 1407 233 198 239 23 chr12 107847641 107847729 -13409801 + PB1D10 SINE Alu 21 127 -20 6 1407 203 284 101 72 chr12 107847759 107847963 -13409567 - L2b LINE L2 -248 3139 2919 6 1407 933 108 0 0 chr12 107848245 107848374 -13409156 + B1_Mus2 SINE Alu 11 139 -8 6 1407 271 290 170 14 chr12 107848529 107848676 -13408854 + MLT1D LTR MaLR 13 182 -323 6 1407 524 365 18 12 chr12 107848730 107848899 -13408631 + MLT1D LTR MaLR 254 423 -82 6 1407 192 40 0 0 chr12 107849736 107849761 -13407769 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1407 339 25 0 0 chr12 107849787 107849827 -13407703 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1407 214 253 12 12 chr12 107849852 107849932 -13407598 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1407 243 103 0 0 chr12 107849960 107849999 -13407531 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1407 341 148 12 0 chr12 107850025 107850106 -13407424 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1407 575 144 0 8 chr12 107850134 107850260 -13407270 + (CA)n Simple_repeat Simple_repeat 1 125 0 6 1407 183 267 0 22 chr12 107851095 107851141 -13406389 + L2a LINE L2 3379 3423 -3 6 1407 308 215 0 9 chr12 107852635 107852743 -13404787 + (ATG)n Simple_repeat Simple_repeat 1 107 0 6 1407 260 53 26 0 chr12 107852768 107852806 -13404724 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1407 2212 81 0 157 chr12 107853867 107854250 -13403280 + ORR1A2 LTR MaLR 1 323 -4 6 1407 225 0 0 0 chr12 107854691 107854716 -13402814 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1407 587 256 116 42 chr12 107854802 107855018 -13402512 + ORR1E LTR MaLR 1 232 -127 6 1407 337 285 182 31 chr12 107855143 107855335 -13402195 + Tigger7 DNA MER2_type 18 238 -101 6 1407 306 0 0 0 chr12 107856367 107856401 -13401129 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1407 258 105 0 0 chr12 107856401 107856439 -13401091 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 1407 191 36 36 0 chr12 107856537 107856565 -13400965 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 1407 288 275 0 52 chr12 107856759 107856874 -13400656 + GA-rich Low_complexity Low_complexity 4 112 0 6 1407 315 0 0 0 chr12 107857250 107857285 -13400245 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 6 1407 181 206 210 14 chr12 107857444 107857568 -13399962 - MIR SINE MIR -93 175 20 6 1407 592 263 15 15 chr12 107858293 107858428 -13399102 - RSINE1 SINE B4 0 165 31 6 1407 742 281 6 6 chr12 107858473 107858641 -13398889 + ORR1E LTR MaLR 2 169 -190 6 1407 358 299 9 9 chr12 107858693 107858801 -13398729 + PB1D10 SINE Alu 10 117 0 6 1407 285 29 0 0 chr12 107858812 107858846 -13398684 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 6 1407 228 35 0 0 chr12 107858867 107858896 -13398634 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1407 262 344 71 57 chr12 107861569 107861788 -13395742 + L2c LINE L2 2933 3160 -227 6 1407 315 0 0 0 chr12 107862314 107862349 -13395181 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1407 434 296 58 78 chr12 107863221 107863463 -13394067 + MER2 DNA MER2_type 16 252 -93 6 1407 306 0 0 0 chr12 107864364 107864398 -13393132 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1407 234 0 0 0 chr12 107864398 107864423 -13393107 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1407 26 30 0 0 chr12 107864502 107864535 -13392995 + AT_rich Low_complexity Low_complexity 1 33 0 6 1407 436 32 32 0 chr12 107864558 107864620 -13392910 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1407 354 98 0 0 chr12 107864631 107864682 -13392848 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 6 1407 21 0 0 0 chr12 107864844 107864865 -13392665 + AT_rich Low_complexity Low_complexity 1 21 0 6 1407 292 363 33 65 chr12 107865884 107866099 -13391431 - MLT1B LTR MaLR -154 236 29 6 1407 210 37 0 0 chr12 107866145 107866172 -13391358 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1407 618 243 20 7 chr12 107867089 107867238 -13390292 - HAL1-2a_MD LINE L1 -522 2502 2352 6 1407 607 339 8 75 chr12 107867690 107867929 -13389601 + B4 SINE B4 1 223 -69 6 1407 649 256 190 52 chr12 107868066 107868216 -13389314 - ORR1B2 LTR MaLR 0 367 188 6 1407 345 24 0 0 chr12 107868216 107868258 -13389272 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1407 649 256 190 52 chr12 107868258 107868396 -13389134 - ORR1B2 LTR MaLR -180 187 39 6 1407 246 208 21 0 chr12 107868399 107868447 -13389083 - ORR1C1 LTR MaLR -106 261 213 6 1407 333 179 0 0 chr12 107868448 107868532 -13388998 + (ATG)n Simple_repeat Simple_repeat 1 84 0 6 1407 1070 185 8 134 chr12 107868558 107868820 -13388710 - ORR1C1 LTR MaLR -148 230 2 6 1407 257 340 140 25 chr12 107869929 107870207 -13387323 - MLT1J2 LTR MaLR -134 314 5 6 1407 465 19 0 0 chr12 107870218 107870272 -13387258 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1407 233 300 0 32 chr12 107870290 107870383 -13387147 + (TATG)n Simple_repeat Simple_repeat 4 93 0 6 1407 236 232 0 10 chr12 107870391 107870491 -13387039 + (TG)n Simple_repeat Simple_repeat 1 99 0 7 1407 303 308 0 25 chr12 107870501 107870621 -13386909 + (TATATG)n Simple_repeat Simple_repeat 6 122 0 7 1407 324 0 0 0 chr12 107871774 107871810 -13385720 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1407 237 132 0 0 chr12 107871915 107871953 -13385577 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1408 591 103 0 0 chr12 107872733 107872830 -13384700 + (TC)n Simple_repeat Simple_repeat 2 98 0 7 1408 386 203 24 75 chr12 107872866 107873051 -13384479 + RLTR21 LTR ERVK 1098 1254 -318 7 1408 323 297 16 83 chr12 107873032 107873153 -13384377 - B4 SINE B4 0 292 180 7 1408 428 329 63 55 chr12 107873347 107873654 -13383876 + B4A SINE B4 3 292 0 7 1408 1176 82 27 27 chr12 107875851 107876413 -13381117 + (TCTA)n Simple_repeat Simple_repeat 1 561 0 7 1408 801 289 0 14 chr12 107878651 107878865 -13378665 + B4A SINE B4 9 219 -73 7 1408 452 77 44 0 chr12 107878924 107879015 -13378515 + (CA)n Simple_repeat Simple_repeat 1 95 0 7 1408 216 0 0 0 chr12 107879488 107879512 -13378018 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1408 472 277 60 7 chr12 107879565 107879714 -13377816 + Lx8 LINE L1 7047 7203 -270 7 1408 390 300 161 38 chr12 107880146 107880413 -13377117 + MLT1F2 LTR MaLR 102 401 -159 7 1408 252 0 0 0 chr12 107880548 107880576 -13376954 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1408 1112 233 127 12 chr12 107880975 107881305 -13376225 + ORR1D2 LTR MaLR 1 368 -2 7 1408 208 175 25 0 chr12 107881382 107881422 -13376108 + CT-rich Low_complexity Low_complexity 1 41 0 7 1408 789 117 11 17 chr12 107881422 107881596 -13375934 + (TC)n Simple_repeat Simple_repeat 1 173 0 7 1408 301 227 176 57 chr12 107881596 107881755 -13375775 + MTEa LTR MaLR 202 379 0 7 1408 369 0 0 0 chr12 107883741 107883782 -13373748 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1408 720 89 0 0 chr12 107884658 107884759 -13372771 + (AGGGGG)n Simple_repeat Simple_repeat 5 105 0 7 1408 823 287 53 30 chr12 107885258 107885520 -13372010 + B4A SINE B4 2 269 -23 7 1408 293 189 11 0 chr12 107885528 107885623 -13371907 + GA-rich Low_complexity Low_complexity 2 97 0 7 1408 540 320 0 7 chr12 107885698 107885846 -13371684 + ID_B1 SINE B4 77 223 -1 7 1408 1140 114 0 0 chr12 107886483 107886659 -13370871 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 7 1408 417 86 0 0 chr12 107887113 107887171 -13370359 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1408 262 299 47 35 chr12 107887621 107887653 -13369877 + L1ME3B LINE L1 3383 3418 -2728 7 1408 614 277 43 14 chr12 107887653 107887862 -13369668 - B3 SINE B2 -1 215 1 7 1408 286 295 63 33 chr12 107887862 107887999 -13369531 + L1ME3B LINE L1 3419 3554 -2592 7 1408 676 288 18 6 chr12 107888209 107888380 -13369150 + MTE2a LTR MaLR 1 173 -186 7 1408 1114 206 15 61 chr12 107888397 107888548 -13368982 + MTE2a LTR MaLR 127 270 -109 7 1408 1665 234 11 6 chr12 107888548 107888914 -13368616 + ORR1D2 LTR MaLR 1 368 -2 7 1408 1114 206 15 61 chr12 107888914 107889025 -13368505 + MTE2a LTR MaLR 271 377 -2 7 1408 2840 62 69 3 chr12 107889244 107889403 -13368127 - MTB LTR MaLR 0 400 227 7 1408 411 21 0 0 chr12 107889403 107889451 -13368079 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1408 2840 62 69 3 chr12 107889451 107889666 -13367864 - MTB LTR MaLR -174 226 2 7 1408 578 260 126 11 chr12 107890052 107890227 -13367303 - ORR1D2 LTR MaLR -6 364 170 7 1408 421 334 86 63 chr12 107890384 107890860 -13366670 + L1ME3B LINE L1 4620 5106 -1040 7 1408 2368 291 39 17 chr12 107890879 107891628 -13365902 - Lx8 LINE L1 -519 6954 6190 7 1408 746 129 19 12 chr12 107891630 107891955 -13365575 + (TCTA)n Simple_repeat Simple_repeat 1 327 0 7 1408 180 0 0 0 chr12 107891976 107891996 -13365534 + (TATG)n Simple_repeat Simple_repeat 1 20 0 7 1408 843 77 35 12 chr12 107891996 107892168 -13365362 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 7 1408 1144 269 152 12 chr12 107892510 107892924 -13364606 + Lx8 LINE L1 6981 7452 -21 7 1408 300 196 87 67 chr12 107893448 107893552 -13363978 + L1M2 LINE L1 3083 3188 -2955 7 1408 567 245 54 0 chr12 107893648 107893795 -13363735 + RSINE1 SINE B4 3 157 -8 7 1408 883 351 41 20 chr12 107893864 107894449 -13363081 + L1ME3B LINE L1 5290 5886 -354 7 1408 872 214 6 6 chr12 107894778 107895299 -13362231 + (TG)n Simple_repeat Simple_repeat 1 521 0 7 1408 798 296 85 11 chr12 107895302 107895562 -13361968 - B4A SINE B4 0 292 14 7 1408 410 154 13 0 chr12 107895565 107895643 -13361887 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 7 1408 225 108 0 0 chr12 107897630 107897667 -13359863 + (CTCA)n Simple_repeat Simple_repeat 3 39 0 7 1408 2819 35 0 0 chr12 107897778 107898116 -13359414 - ORR1A1 LTR MaLR -8 338 1 7 1408 262 120 34 57 chr12 107898159 107898247 -13359283 + (TAA)n Simple_repeat Simple_repeat 1 86 0 7 1408 511 214 0 0 chr12 107898390 107898474 -13359056 + RSINE1 SINE B4 47 130 -35 7 1408 2422 98 6 0 chr12 107899052 107899377 -13358153 + ORR1A2 LTR MaLR 1 327 0 7 1408 334 261 83 9 chr12 107899690 107899833 -13357697 + MIRm SINE MIR 42 190 -72 7 1408 626 300 84 40 chr12 107900008 107900258 -13357272 - B4A SINE B4 -8 284 24 7 1408 252 275 114 48 chr12 107900424 107900634 -13356896 + L1MA6 LINE L1 5940 6163 -137 7 1408 1181 134 37 20 chr12 107901511 107901937 -13355593 + (TCTA)n Simple_repeat Simple_repeat 1 433 0 7 1408 201 74 0 0 chr12 107901937 107901964 -13355566 + (TATG)n Simple_repeat Simple_repeat 1 27 0 7 1408 418 163 25 38 chr12 107901964 107902033 -13355497 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 7 1408 1129 67 6 6 chr12 107902569 107902734 -13354796 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 7 1408 985 213 40 10 chr12 107902810 107903009 -13354521 - B4 SINE B4 -3 289 85 7 1408 573 55 0 0 chr12 107903014 107903087 -13354443 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 7 1408 306 125 0 0 chr12 107903087 107903135 -13354395 + (TCC)n Simple_repeat Simple_repeat 3 50 0 7 1408 345 269 103 58 chr12 107905152 107905468 -13352062 + ORR1E LTR MaLR 4 344 -15 7 1408 266 296 71 13 chr12 107905711 107905865 -13351665 + L1MD LINE L1 4239 4401 -1745 7 1408 466 183 0 11 chr12 107905867 107905962 -13351568 + PB1D7 SINE Alu 28 118 -2 7 1408 239 290 58 84 chr12 107906047 107906273 -13351257 + L1MD LINE L1 4471 4690 -1456 7 1408 529 252 9 9 chr12 107906285 107906393 -13351137 - RSINE1 SINE B4 -3 162 55 7 1408 652 105 17 17 chr12 107906423 107906539 -13350991 + (CATA)n Simple_repeat Simple_repeat 1 116 0 7 1408 255 143 232 0 chr12 107906577 107906633 -13350897 - Lx9 LINE L1 -374 7270 7202 7 1408 440 187 70 21 chr12 107906623 107906765 -13350765 + Lx9 LINE L1 7496 7644 0 7 1408 442 265 177 73 chr12 107906765 107907205 -13350325 + L1MD LINE L1 4681 5166 -980 7 1408 189 107 0 0 chr12 107907208 107907236 -13350294 + (CTA)n Simple_repeat Simple_repeat 1 28 0 7 1408 454 271 126 15 chr12 107907275 107907410 -13350120 - Lx8 LINE L1 -136 7337 7188 7 1408 1913 316 38 36 chr12 107907432 107908247 -13349283 + Lx8 LINE L1 6370 7186 -287 7 1408 206 284 45 0 chr12 107908324 107908391 -13349139 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 7 1408 513 270 157 20 chr12 107908391 107908871 -13348659 + L1MD LINE L1 5208 5754 -488 7 1408 705 347 39 18 chr12 107909049 107909328 -13348202 + B4A SINE B4 5 289 -3 7 1408 438 20 0 0 chr12 107909383 107909434 -13348096 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1408 360 272 27 36 chr12 107909747 107909858 -13347672 + PB1D10 SINE Alu 6 112 -5 7 1408 579 236 107 0 chr12 107909863 107910003 -13347527 + B3A SINE B2 2 156 -42 7 1408 485 32 16 0 chr12 107910369 107910432 -13347098 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1408 380 272 79 43 chr12 107910432 107910654 -13346876 - B4A SINE B4 -23 269 3 7 1408 369 0 0 0 chr12 107911698 107911739 -13345791 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1408 2158 144 14 17 chr12 107913078 107913432 -13344098 + ORR1B2 LTR MaLR 1 353 -14 7 1408 277 350 32 48 chr12 107913439 107913565 -13343965 + B4A SINE B4 50 173 -119 7 1408 209 252 25 8 chr12 107913570 107913690 -13343840 + (CA)n Simple_repeat Simple_repeat 2 123 0 7 1408 324 70 0 0 chr12 107914628 107914671 -13342859 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 7 1408 486 188 16 16 chr12 107915322 107915575 -13341955 + (TG)n Simple_repeat Simple_repeat 1 253 0 7 1408 695 144 6 33 chr12 107915600 107915648 -13341882 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1408 414 0 0 0 chr12 107915648 107915694 -13341836 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1408 695 144 6 33 chr12 107915694 107915825 -13341705 + (TG)n Simple_repeat Simple_repeat 2 130 0 7 1408 580 157 12 35 chr12 107915872 107916044 -13341486 + (TG)n Simple_repeat Simple_repeat 2 169 0 7 1408 757 330 47 7 chr12 107916083 107916361 -13341169 - B4A SINE B4 0 292 4 7 1408 313 286 92 33 chr12 107916487 107916639 -13340891 - AmnSINE1 SINE SINE -103 472 312 7 1408 937 192 11 22 chr12 107916947 107917128 -13340402 - B3A SINE B2 -17 181 3 7 1408 300 53 0 0 chr12 107918289 107918327 -13339203 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7 1408 297 284 12 0 chr12 107918692 107918773 -13338757 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 1408 910 263 27 54 chr12 107918773 107919070 -13338460 - B4A SINE B4 0 292 4 7 1408 216 0 0 0 chr12 107919335 107919359 -13338171 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1408 638 85 11 0 chr12 107920202 107920296 -13337234 + (TG)n Simple_repeat Simple_repeat 2 96 0 7 1408 733 313 89 41 chr12 107920315 107920585 -13336945 - B4A SINE B4 -7 285 3 7 1408 861 84 0 0 chr12 107920599 107920718 -13336812 + (TTTC)n Simple_repeat Simple_repeat 3 121 0 7 1408 410 53 18 0 chr12 107920718 107920775 -13336755 + (TCCC)n Simple_repeat Simple_repeat 2 59 0 7 1408 201 132 0 0 chr12 107920775 107920813 -13336717 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1408 738 0 0 0 chr12 107922997 107923079 -13334451 + (TTC)n Simple_repeat Simple_repeat 1 82 0 7 1408 29 47 0 0 chr12 107923484 107923527 -13334003 + AT_rich Low_complexity Low_complexity 1 43 0 7 1408 490 291 51 37 chr12 107923591 107923805 -13333725 + L1M5 LINE L1 5451 5667 -457 7 1408 491 70 0 14 chr12 107924766 107924839 -13332691 + (GAAA)n Simple_repeat Simple_repeat 4 75 0 7 1408 414 0 0 0 chr12 107925536 107925582 -13331948 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1408 604 36 24 0 chr12 107927235 107927318 -13330212 + (GA)n Simple_repeat Simple_repeat 2 86 0 8 1408 339 25 0 0 chr12 107927319 107927359 -13330171 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 8 1408 378 0 0 0 chr12 107927615 107927657 -13329873 + (TAA)n Simple_repeat Simple_repeat 1 42 0 8 1408 223 268 17 43 chr12 107927834 107927951 -13329579 + CT-rich Low_complexity Low_complexity 1 114 0 8 1408 437 189 0 87 chr12 107928043 107928147 -13329383 + MT2B LTR ERVL 163 257 -344 8 1408 1085 51 7 0 chr12 107928054 107928191 -13329339 + B1_Mus2 SINE Alu 10 147 0 8 1408 1599 6 0 0 chr12 107928202 107928382 -13329148 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1408 399 285 95 35 chr12 107928897 107929097 -13328433 + ID_B1 SINE B4 2 213 -11 8 1408 516 134 0 0 chr12 107929263 107929360 -13328170 + (TC)n Simple_repeat Simple_repeat 2 98 0 8 1408 250 155 0 53 chr12 107930256 107930331 -13327199 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 8 1408 818 299 78 11 chr12 107930401 107930672 -13326858 - B4A SINE B4 0 292 4 8 1408 345 192 48 150 chr12 107930775 107930922 -13326608 + MIRc SINE MIR 66 197 -71 8 1408 335 136 45 0 chr12 107932889 107932955 -13324575 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 8 1408 267 342 91 33 chr12 107933196 107933317 -13324213 + MER58B DNA MER1_type 194 321 -20 8 1408 756 276 62 129 chr12 107934422 107934826 -13322704 - MTE2a LTR MaLR -2 377 1 8 1408 255 61 0 0 chr12 107934895 107934928 -13322602 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1408 3765 203 91 30 chr12 107935057 107935153 -13322377 + RMER1A Other Other 98 189 -841 8 1408 3212 54 10 8 chr12 107935153 107935548 -13321982 + MTA_Mm LTR MaLR 1 396 0 8 1408 3765 203 91 30 chr12 107935548 107936204 -13321326 + RMER1A Other Other 190 872 -158 8 1408 246 95 0 0 chr12 107936204 107936246 -13321284 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1408 3765 203 91 30 chr12 107936246 107936360 -13321170 + RMER1A Other Other 873 1017 -13 8 1408 571 229 149 14 chr12 107936424 107936645 -13320885 - Lx8 LINE L1 -5 7468 7218 8 1408 774 251 55 37 chr12 107936647 107936920 -13320610 + Lx8 LINE L1 6879 7156 -317 8 1408 627 305 84 25 chr12 107937696 107937898 -13319632 + MLT2B4 LTR ERVL 3 216 -340 8 1408 546 234 26 52 chr12 107938995 107939148 -13318382 + ORR1D2 LTR MaLR 1 149 -221 8 1408 1367 70 43 11 chr12 107939148 107939336 -13318194 + B2_Mm2 SINE B2 2 195 0 8 1408 388 306 23 102 chr12 107939336 107939397 -13318133 + ORR1D2 LTR MaLR 150 198 -180 8 1408 180 291 62 25 chr12 107939492 107939573 -13317957 + MIR SINE MIR 76 159 -103 8 1408 472 188 0 12 chr12 107939664 107939745 -13317785 + URR1A DNA MER1_type 16 95 -131 8 1408 1035 299 24 12 chr12 107939851 107940179 -13317351 - ORR1D2 LTR MaLR -8 362 31 8 1408 812 134 15 15 chr12 107940174 107940310 -13317220 + URR1A DNA MER1_type 90 225 -1 8 1408 312 123 27 14 chr12 107940747 107940821 -13316709 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 1408 454 156 34 28 chr12 107940839 107941017 -13316513 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1408 231 119 67 38 chr12 107941071 107941150 -13316380 + (CA)n Simple_repeat Simple_repeat 2 84 0 8 1408 403 95 13 13 chr12 107941150 107941225 -13316305 + (CATA)n Simple_repeat Simple_repeat 4 78 0 8 1408 231 119 67 38 chr12 107941225 107941250 -13316280 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1408 363 308 84 8 chr12 107941373 107941504 -13316026 + B1F1 SINE Alu 1 141 -8 8 1408 423 309 5 7 chr12 107941544 107941669 -13315861 + PB1D10 SINE Alu 9 132 -17 8 1408 217 353 70 28 chr12 107941669 107941687 -13315843 + B4 SINE B4 94 242 -50 8 1408 870 36 0 0 chr12 107941877 107941987 -13315543 + (TG)n Simple_repeat Simple_repeat 2 111 0 8 1408 2101 173 50 8 chr12 107942010 107942411 -13315119 + MTC LTR MaLR 1 418 -3 8 1408 704 274 51 65 chr12 107942437 107942705 -13314825 - ID_B1 SINE B4 -25 267 4 8 1408 608 321 231 31 chr12 107942940 107943454 -13314076 + Tigger9b DNA MER2_type 8 624 0 8 1408 490 309 49 93 chr12 107943936 107943977 -13313553 - B3 SINE B2 0 216 183 8 1408 402 100 0 0 chr12 107943977 107944037 -13313493 + (CATA)n Simple_repeat Simple_repeat 4 63 0 8 1408 519 306 38 55 chr12 107944037 107944220 -13313310 - B3A SINE B2 -17 181 2 8 1408 297 0 0 0 chr12 107945081 107945114 -13312416 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1408 385 348 55 45 chr12 107946101 107946321 -13311209 - MER58B DNA MER1_type -25 316 95 8 1408 349 314 62 30 chr12 107946446 107946664 -13310866 - ORR1E LTR MaLR -142 228 1 8 1408 3540 328 39 21 chr12 107946683 107948037 -13309493 - MTE-int LTR MaLR -112 1468 90 8 1408 1121 103 0 0 chr12 107948100 107948245 -13309285 - B1_Mus1 SINE Alu 0 148 4 8 1408 617 284 9 106 chr12 107948265 107948482 -13309048 - MTEa LTR MaLR -2 377 182 8 1408 740 293 20 32 chr12 107948496 107948743 -13308787 - MTE-int LTR MaLR -1065 515 272 8 1408 713 241 72 39 chr12 107949011 107949218 -13308312 - B3 SINE B2 -1 215 2 8 1408 583 290 92 23 chr12 107949258 107949582 -13307948 - MT2A LTR ERVL -2 552 135 8 1408 733 298 31 31 chr12 107949650 107949941 -13307589 - RLTR15 LTR ERVK -68 291 1 8 1408 416 293 57 8 chr12 107949944 107950068 -13307462 - MT2A LTR ERVL -402 131 2 8 1408 264 286 97 18 chr12 107950382 107950496 -13307034 + MIRc SINE MIR 60 182 -86 8 1408 206 214 0 0 chr12 107951026 107951068 -13306462 + (TCTCTG)n Simple_repeat Simple_repeat 3 44 0 8 1408 609 286 28 51 chr12 107951089 107951266 -13306264 - ID_B1 SINE B4 -15 209 37 8 1408 906 99 112 7 chr12 107951293 107951436 -13306094 + B2_Mm2 SINE B2 1 158 -37 8 1408 396 0 0 0 chr12 107951437 107951481 -13306049 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 8 1408 266 7 0 0 chr12 107951512 107951546 -13305984 + B2_Mm1a SINE B2 122 155 -40 8 1408 486 0 0 0 chr12 107951546 107951600 -13305930 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 8 1408 1186 248 64 91 chr12 107951709 107952180 -13305350 + RMER4A LTR ERVK 4 461 -5 8 1408 1024 248 170 32 chr12 107952187 107952499 -13305031 + ORR1D2 LTR MaLR 16 370 0 8 1408 198 0 0 0 chr12 107952533 107952555 -13304975 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1408 498 46 0 0 chr12 107952555 107952619 -13304911 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 1408 207 0 0 0 chr12 107953304 107953327 -13304203 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1408 484 168 13 2 chr12 107953413 107953502 -13304028 - MTEa LTR MaLR -304 92 4 8 1408 3558 202 33 28 chr12 107953502 107954224 -13303306 + Lx5 LINE L1 6325 7050 0 8 1408 679 279 129 19 chr12 107954475 107954772 -13302758 + ORR1E LTR MaLR 21 359 0 8 1408 1115 284 40 0 chr12 107957219 107957515 -13300015 + MTE2b LTR MaLR 5 312 -67 8 1408 392 157 9 29 chr12 107958226 107958309 -13299221 + GA-rich Low_complexity Low_complexity 3 84 0 8 1408 1326 78 0 0 chr12 107958309 107958489 -13299041 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 1408 392 157 9 29 chr12 107958489 107958510 -13299020 + polypurine Low_complexity Low_complexity 85 104 0 8 1408 997 286 14 36 chr12 107958839 107959115 -13298415 + B4A SINE B4 21 290 -2 8 1408 281 68 23 0 chr12 107959183 107959227 -13298303 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 8 1408 181 291 78 99 chr12 107960596 107960737 -13296793 + L2a LINE L2 3264 3401 -25 8 1408 2307 79 3 60 chr12 107961698 107962033 -13295497 - ORR1A2 LTR MaLR -11 316 1 8 1408 282 361 82 29 chr12 107963018 107963226 -13294304 - MIR SINE MIR -19 243 25 8 1408 465 307 77 62 chr12 107963355 107963629 -13293901 + MLT1B LTR MaLR 21 298 -92 8 1408 1175 92 0 11 chr12 107964148 107964324 -13293206 + (TCCCC)n Simple_repeat Simple_repeat 5 178 0 8 1408 349 170 47 9 chr12 107964352 107964459 -13293071 + CT-rich Low_complexity Low_complexity 4 114 0 8 1408 1124 44 6 19 chr12 107964464 107964626 -13292904 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 8 1408 287 362 9 0 chr12 107964628 107964733 -13292797 - PB1D9 SINE Alu -14 106 1 8 1408 814 302 29 82 chr12 107965297 107965640 -13291890 + MLT1C LTR MaLR 53 377 -90 8 1408 1059 231 121 4 chr12 107966913 107967170 -13290360 - MTEa LTR MaLR 0 379 93 8 1408 284 320 40 0 chr12 107967081 107967181 -13290349 - MLT2B5 LTR ERVL -390 211 108 8 1408 1083 95 0 13 chr12 107968532 107968669 -13288861 + B1_Mus1 SINE Alu 1 137 -11 8 1408 225 0 0 0 chr12 107968669 107968694 -13288836 + (CAA)n Simple_repeat Simple_repeat 2 26 0 8 1408 1083 95 0 13 chr12 107968694 107968705 -13288825 + B1_Mus1 SINE Alu 138 147 -1 8 1408 1035 270 95 25 chr12 107968941 107969374 -13288156 + Lx8 LINE L1 6982 7444 -29 8 1408 685 284 111 46 chr12 107969630 107969892 -13287638 - B4 SINE B4 -5 287 9 8 1408 627 81 0 0 chr12 107971292 107971378 -13286152 + (TC)n Simple_repeat Simple_repeat 1 86 0 8 1408 1904 256 18 20 chr12 107971381 107971831 -13285699 - Lx5 LINE L1 -9 7041 6593 8 1408 3395 185 114 79 chr12 107971828 107972888 -13284642 + Lx5 LINE L1 5540 6613 -437 8 1408 447 187 25 17 chr12 107975546 107975639 -13281891 + MT2A LTR ERVL 1 85 -448 8 1408 2908 180 42 19 chr12 107975639 107975651 -13281879 - Lx5 LINE L1 0 7050 7042 8 1408 1424 23 19 0 chr12 107975651 107975918 -13281612 + (TCTA)n Simple_repeat Simple_repeat 1 272 0 8 1408 2908 180 42 19 chr12 107975918 107976444 -13281086 - Lx5 LINE L1 -9 7041 6496 8 1408 244 118 0 0 chr12 107976444 107976478 -13281052 + Lx5 LINE L1 6478 6511 -539 8 1408 769 228 110 31 chr12 107976518 107976872 -13280658 + MT2A LTR ERVL 95 541 -60 8 1408 331 222 12 23 chr12 107976874 107977045 -13280485 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 8 1408 704 184 0 32 chr12 107977017 107977202 -13280328 + (CATA)n Simple_repeat Simple_repeat 2 180 0 8 1408 291 279 108 92 chr12 107978032 107978281 -13279249 - MIR SINE MIR -8 254 5 8 1408 282 87 0 0 chr12 107978283 107978329 -13279201 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1408 705 274 55 0 chr12 107978438 107978602 -13278928 - B4 SINE B4 -119 173 1 8 1408 309 302 232 10 chr12 107978699 107978906 -13278624 - MLT1C LTR MaLR -52 415 163 8 1408 942 220 5 35 chr12 107978896 107979094 -13278436 + B3 SINE B2 25 216 0 8 1408 251 275 86 21 chr12 107979145 107979220 -13278310 - MLT1C LTR MaLR -257 133 53 8 1408 313 361 37 25 chr12 107979220 107979382 -13278148 + ORR1E LTR MaLR 1 164 -195 8 1408 316 330 17 26 chr12 107981141 107981256 -13276274 - PB1D7 SINE Alu -1 119 6 8 1408 829 285 244 12 chr12 107981349 107981674 -13275856 + MTD LTR MaLR 18 417 -2 8 1408 1126 266 65 62 chr12 107981722 107982078 -13275452 + ORR1E LTR MaLR 1 357 -2 8 1408 219 389 65 32 chr12 107982365 107982551 -13274979 + MIRb SINE MIR 27 218 -50 8 1408 183 80 0 0 chr12 107983269 107983294 -13274236 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1408 774 255 118 10 chr12 107983310 107983650 -13273880 - MTD LTR MaLR -24 376 5 9 1408 222 118 0 0 chr12 107984122 107984156 -13273374 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 9 1408 242 357 63 48 chr12 107985440 107985646 -13271884 + MIRc SINE MIR 11 219 -49 9 1408 183 156 0 0 chr12 107986793 107986825 -13270705 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 1408 186 71 0 0 chr12 107986830 107986858 -13270672 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1408 375 300 18 34 chr12 107988008 107988166 -13269364 - MLT1H LTR MaLR 0 549 336 9 1408 1451 262 143 17 chr12 107989185 107989709 -13267821 + Lx8 LINE L1 6882 7471 -2 9 1408 216 178 22 0 chr12 107990550 107990595 -13266935 + B4 SINE B4 2 47 -245 9 1408 340 283 10 0 chr12 107990775 107990874 -13266656 + (CTCTG)n Simple_repeat Simple_repeat 2 101 0 9 1408 801 271 86 8 chr12 107991004 107991272 -13266258 + B4 SINE B4 2 290 -2 9 1408 263 179 56 14 chr12 107992900 107993042 -13264488 + (TG)n Simple_repeat Simple_repeat 1 148 0 9 1408 291 142 51 45 chr12 107993126 107993303 -13264227 + (TG)n Simple_repeat Simple_repeat 2 179 0 9 1408 1352 232 106 9 chr12 107994897 107995219 -13262311 + ORR1E LTR MaLR 1 353 -6 9 1408 412 289 47 24 chr12 107995832 107996002 -13261528 + L1M3e LINE L1 7 180 -6850 9 1408 309 167 39 118 chr12 107996174 107996276 -13261254 - L1MC4 LINE L1 -4045 2170 2077 9 1408 211 264 43 11 chr12 107996418 107996510 -13261020 + A-rich Low_complexity Low_complexity 3 97 0 9 1408 394 337 240 35 chr12 107996523 107996838 -13260692 - ORR1E LTR MaLR 0 419 1 9 1408 3299 315 82 51 chr12 107996838 107997852 -13259678 - ORR1E-int LTR MaLR -53 1527 475 9 1408 330 26 0 0 chr12 107997852 107997891 -13259639 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1408 3299 315 82 51 chr12 107997891 107998357 -13259173 - ORR1E-int LTR MaLR -1106 474 1 9 1408 806 314 50 61 chr12 107998358 107998721 -13258809 - ORR1E LTR MaLR 0 359 1 9 1408 244 258 122 24 chr12 107998769 107998892 -13258638 + L1M3e LINE L1 3131 3265 -3838 9 1408 704 312 31 31 chr12 107998893 107999088 -13258442 + B3A SINE B2 4 198 0 9 1408 31 26 0 0 chr12 107999088 107999126 -13258404 + AT_rich Low_complexity Low_complexity 1 38 0 9 1408 2141 170 58 10 chr12 107999266 107999665 -13257865 - MTC LTR MaLR -3 418 1 9 1408 328 236 70 47 chr12 107999858 107999987 -13257543 + L1M3e LINE L1 3693 3824 -3279 9 1408 423 0 0 0 chr12 108000054 108000101 -13257429 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1408 360 0 0 0 chr12 108000101 108000140 -13257390 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1408 215 61 0 29 chr12 108000239 108000273 -13257257 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1408 576 310 11 17 chr12 108000333 108000507 -13257023 - MTD LTR MaLR -246 173 1 4 1408 648 303 13 47 chr12 108002132 108002433 -13255097 - B4A SINE B4 0 292 2 5 1408 260 295 79 62 chr12 108002454 108002646 -13254884 - MIR SINE MIR -45 217 28 6 1408 257 359 18 23 chr12 108002832 108003003 -13254527 - MIR SINE MIR -45 217 48 7 21 737 296 48 4 chr12 108003198 108003425 -13254105 + MER2 DNA MER2_type 82 318 -27 8 1409 180 53 79 0 chr12 108003855 108003893 -13253637 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 9 1409 750 136 22 22 chr12 108003904 108004084 -13253446 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 9 1409 382 212 144 42 chr12 108004084 108004251 -13253279 + RLTR21 LTR ERVK 1078 1261 -311 1 1409 518 250 50 0 chr12 108004256 108004396 -13253134 + MTEb LTR MaLR 228 374 -5 1 1409 1124 279 24 27 chr12 108004408 108004783 -13252747 - L1MC1 LINE L1 -331 6002 5629 1 1409 808 261 0 0 chr12 108004798 108004974 -13252556 + ORR1D2 LTR MaLR 1 176 -194 1 1409 1085 214 50 0 chr12 108005118 108005319 -13252211 - B3 SINE B2 0 216 6 1 1409 379 241 101 45 chr12 108005461 108005639 -13251891 - L1MC1 LINE L1 -935 5211 5024 1 1409 957 260 70 132 chr12 108005644 108005988 -13251542 - MTE2a LTR MaLR 0 379 58 1 1409 1356 100 16 0 chr12 108005988 108006178 -13251352 + B2_Mm2 SINE B2 3 195 0 1 1409 957 260 70 132 chr12 108006178 108006236 -13251294 - MTE2a LTR MaLR -322 57 2 1 1409 1128 310 112 15 chr12 108006245 108006917 -13250613 - L1MC1 LINE L1 -1149 4997 4261 1 1409 324 0 0 0 chr12 108008307 108008343 -13249187 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 1 1409 447 19 0 0 chr12 108008386 108008438 -13249092 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1409 204 353 96 19 chr12 108008892 108008996 -13248534 + MIR SINE MIR 37 148 -60 1 1409 220 280 92 51 chr12 108009791 108009814 -13247716 + B1F SINE Alu 48 149 0 2 1409 300 240 40 0 chr12 108009814 108009889 -13247641 + ID_B1 SINE B4 147 224 0 2 1409 212 311 56 56 chr12 108009916 108010042 -13247488 - B4 SINE B4 -165 127 2 2 1409 468 51 0 0 chr12 108010787 108010846 -13246684 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1409 348 328 52 56 chr12 108010996 108011209 -13246321 - MLT1C LTR MaLR -34 433 222 2 1409 348 24 0 0 chr12 108011644 108011685 -13245845 + (CCA)n Simple_repeat Simple_repeat 1 41 0 2 1409 274 304 98 0 chr12 108011697 108011809 -13245721 - MLT1C LTR MaLR -279 188 66 2 1409 2540 123 88 5 chr12 108012707 108013114 -13244416 + BGLII_B LTR ERVK 1 441 0 2 1409 636 201 73 22 chr12 108013463 108013600 -13243930 - B1_Mur1 SINE Alu -3 146 3 2 1409 522 143 0 0 chr12 108013886 108013991 -13243539 + (CA)n Simple_repeat Simple_repeat 2 106 0 2 1409 292 298 55 24 chr12 108014470 108014597 -13242933 - L1M4 LINE L1 -397 5767 5637 2 1409 238 250 12 100 chr12 108014608 108014688 -13242842 + ID4 SINE ID 2 74 -9 3 1409 675 217 28 11 chr12 108014621 108014792 -13242738 + B3 SINE B2 9 189 -6 3 1409 332 348 30 18 chr12 108014949 108015113 -13242417 - L1M4 LINE L1 -824 5322 5157 2 1409 1309 311 135 37 chr12 108015124 108016018 -13241512 - Lx8 LINE L1 -4 7469 6488 3 1409 849 273 135 0 chr12 108016018 108016278 -13241252 - RMER1B Other Other -620 446 152 3 1409 845 241 158 0 chr12 108016308 108016561 -13240969 - RMER1B Other Other -703 363 71 3 1409 557 104 34 14 chr12 108016771 108016917 -13240613 + (CA)n Simple_repeat Simple_repeat 2 150 0 3 1409 827 112 24 0 chr12 108016947 108017117 -13240413 + (CA)n Simple_repeat Simple_repeat 2 175 0 3 1409 409 252 83 14 chr12 108017142 108017287 -13240243 - Lx9 LINE L1 -220 7424 7270 3 1409 849 246 76 41 chr12 108017289 108017692 -13239838 + MT2A LTR ERVL 1 464 -69 3 1409 273 119 0 0 chr12 108017692 108017734 -13239796 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 3 1409 269 116 58 0 chr12 108017757 108017826 -13239704 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1409 2235 259 65 8 chr12 108018011 108018031 -13239499 - Lx9 LINE L1 -630 7014 6993 3 1409 195 42 0 0 chr12 108018031 108018055 -13239475 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1409 2235 259 65 8 chr12 108018055 108018650 -13238880 - Lx9 LINE L1 -652 6992 6366 3 1409 219 59 0 105 chr12 108018800 108018857 -13238673 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 4 1409 333 258 92 10 chr12 108018977 108019075 -13238455 + RMER12 LTR ERVK 746 851 -471 4 1409 212 152 0 42 chr12 108019092 108019140 -13238390 + (CATA)n Simple_repeat Simple_repeat 3 48 0 4 1409 321 68 0 0 chr12 108019152 108019196 -13238334 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 4 1409 374 227 62 18 chr12 108019748 108019860 -13237670 + RSINE1 SINE B4 2 118 -47 4 1409 480 86 0 0 chr12 108019886 108019956 -13237574 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1409 647 268 109 35 chr12 108021338 108021539 -13235991 - B3 SINE B2 0 216 1 4 1409 183 312 8 99 chr12 108021620 108021741 -13235789 - MIRc SINE MIR -121 147 38 4 1409 361 322 49 60 chr12 108021881 108022066 -13235464 + MER5A DNA MER1_type 5 187 -2 4 1409 1048 167 140 5 chr12 108022296 108022489 -13235041 - URR1A DNA MER1_type 0 226 8 5 1409 477 294 73 32 chr12 108022489 108022509 -13235021 + CYRA11_Mm Unknown Y-chromosome 172 393 -224 5 1409 254 370 21 42 chr12 108023129 108023369 -13234161 - Lx8 LINE L1 -8 7465 7231 5 1409 477 272 62 25 chr12 108023930 108024092 -13233438 - RMER30 DNA MER1_type -30 172 5 5 1409 792 114 0 0 chr12 108024167 108024316 -13233214 + (GA)n Simple_repeat Simple_repeat 2 150 0 5 1409 609 251 133 41 chr12 108025478 108025673 -13231857 + ID_B1 SINE B4 1 213 -11 5 1409 1270 67 6 6 chr12 108025731 108025910 -13231620 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 5 1409 316 275 0 0 chr12 108026184 108026264 -13231266 + MTC LTR MaLR 3 82 -339 5 1409 225 0 0 0 chr12 108027267 108027292 -13230238 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 5 1409 647 311 111 13 chr12 108027389 108027705 -13229825 - Lx8 LINE L1 -355 7118 6772 5 1409 689 273 7 7 chr12 108027760 108027911 -13229619 + B3A SINE B2 6 156 -42 6 1409 423 38 0 0 chr12 108027919 108027972 -13229558 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1409 510 270 65 14 chr12 108027986 108028125 -13229405 + B1_Mur1 SINE Alu 3 148 -1 6 1409 24 0 0 0 chr12 108028155 108028179 -13229351 + AT_rich Low_complexity Low_complexity 1 24 0 6 1409 459 298 41 18 chr12 108028426 108028597 -13228933 + MER104 DNA Tc2 7 181 0 6 1409 215 300 185 0 chr12 108028604 108028734 -13228796 + MIRb SINE MIR 115 268 0 6 1409 561 167 0 0 chr12 108029369 108029471 -13228059 + (TA)n Simple_repeat Simple_repeat 2 103 0 6 1409 1006 223 5 9 chr12 108030116 108030329 -13227201 + B3 SINE B2 5 216 0 6 1409 396 0 0 0 chr12 108032532 108032576 -13224954 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1409 247 335 134 28 chr12 108033216 108033505 -13224025 - MLT2B5 LTR ERVL -167 387 69 6 1409 2266 202 43 49 chr12 108033763 108034293 -13223237 - RLTR11A2 LTR ERVK 0 527 1 7 1409 287 269 60 145 chr12 108035657 108035858 -13221672 + ORR1E LTR MaLR 1 189 -170 7 1409 250 355 178 32 chr12 108036120 108036463 -13221067 + MLT1H LTR MaLR 154 546 -3 7 1409 231 293 83 55 chr12 108036644 108036798 -13220732 + MIRm SINE MIR 26 186 -90 7 1409 569 306 0 20 chr12 108037608 108037755 -13219775 - ID_B1 SINE B4 -3 221 78 7 1409 235 268 0 0 chr12 108037768 108037824 -13219706 - ID_B1 SINE B4 -1 223 168 7 1409 455 145 0 12 chr12 108038092 108038176 -13219354 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 1409 2269 88 16 0 chr12 108038176 108038482 -13219048 - ORR1A2 LTR MaLR -15 312 2 7 1409 414 169 0 0 chr12 108038484 108038573 -13218957 + (TG)n Simple_repeat Simple_repeat 1 89 0 7 1409 484 306 0 0 chr12 108038587 108038708 -13218822 - B4A SINE B4 -8 284 164 7 1409 567 0 0 0 chr12 108038726 108038789 -13218741 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1409 391 253 0 0 chr12 108038805 108038880 -13218650 - B4A SINE B4 -208 84 10 7 1409 370 303 206 26 chr12 108039831 108040171 -13217359 + MER31A LTR ERV1 8 409 -76 8 1409 362 138 30 30 chr12 108041619 108041686 -13215844 + MTD LTR MaLR 341 407 -12 8 1409 363 44 0 0 chr12 108042171 108042216 -13215314 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1409 338 266 65 115 chr12 108042405 108042605 -13214925 - L1M5 LINE L1 -681 5443 5254 8 1409 566 285 0 109 chr12 108043176 108043377 -13214153 + B3A SINE B2 11 189 -9 8 1409 301 22 43 0 chr12 108044650 108044696 -13212834 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 8 1409 1383 276 136 16 chr12 108044866 108045448 -13212082 + Lx8 LINE L1 6812 7463 -10 8 1409 891 289 36 85 chr12 108045612 108045649 -13211881 - ORR1D2 LTR MaLR 0 374 339 8 1409 1158 62 7 0 chr12 108045649 108045795 -13211735 + B1_Mm SINE Alu 1 147 0 8 1409 1093 268 75 25 chr12 108045795 108046146 -13211384 - ORR1D2 LTR MaLR -29 341 5 8 1409 542 170 30 10 chr12 108046148 108046237 -13211293 - ORR1D2-int LTR MaLR -1 1369 1279 8 1409 1166 210 225 7 chr12 108046237 108046544 -13210986 - ORR1C1 LTR MaLR -2 376 3 9 1409 542 170 30 10 chr12 108046544 108046555 -13210975 - ORR1D2-int LTR MaLR -92 1278 1267 8 1409 1256 228 46 52 chr12 108046554 108046860 -13210670 - ORR1D2 LTR MaLR -66 304 1 9 1409 473 292 33 50 chr12 108048076 108048256 -13209274 + RMER30 DNA MER1_type 17 193 -9 9 1409 270 324 115 51 chr12 108048455 108048611 -13208919 - MLT1B LTR MaLR -29 361 196 9 1409 362 331 20 54 chr12 108048635 108048782 -13208748 - B4A SINE B4 -150 142 1 9 1409 589 262 21 28 chr12 108049000 108049145 -13208385 + RSINE1 SINE B4 2 145 -20 9 1409 288 186 34 0 chr12 108050033 108050092 -13207438 + MTEb LTR MaLR 315 375 -4 9 1409 744 164 0 0 chr12 108052354 108052488 -13205042 + (TG)n Simple_repeat Simple_repeat 1 134 0 9 1409 336 335 49 25 chr12 108053082 108053244 -13204286 - RMER15 LTR ERVL -52 523 358 9 1409 935 174 22 34 chr12 108055845 108056052 -13201478 + B3 SINE B2 2 198 0 9 1409 229 325 38 25 chr12 108056366 108056445 -13201085 + B4 SINE B4 34 113 -179 1 1409 26 0 0 0 chr12 108056612 108056638 -13200892 + AT_rich Low_complexity Low_complexity 1 26 0 1 1409 474 273 122 27 chr12 108056852 108057074 -13200456 - B4 SINE B4 -40 252 10 1 1409 1862 199 85 3 chr12 108057194 108057571 -13199959 + MTD LTR MaLR 1 408 -11 1 1409 617 170 0 26 chr12 108058288 108058518 -13199012 + (TG)n Simple_repeat Simple_repeat 1 223 0 1 1409 275 286 11 11 chr12 108059872 108059964 -13197566 + L1_Rod LINE L1 5109 5200 -647 1 1409 2014 159 58 6 chr12 108061342 108061689 -13195841 + ORR1B2 LTR MaLR 1 365 -2 1 1409 518 286 84 19 chr12 108061998 108062212 -13195318 + Charlie5 DNA MER1_type 2243 2470 -154 1 1409 287 301 37 46 chr12 108062643 108062751 -13194779 - B1F1 SINE Alu -3 114 8 1 1409 221 309 0 18 chr12 108062702 108062758 -13194772 - B4A SINE B4 -152 140 86 1 1409 812 271 24 10 chr12 108062770 108062975 -13194555 - B3 SINE B2 0 216 9 1 1409 259 368 109 23 chr12 108063786 108063914 -13193616 - RSINE1 SINE B4 -1 164 26 1 1409 288 91 0 0 chr12 108064025 108064069 -13193461 + (AGGGGG)n Simple_repeat Simple_repeat 2 45 0 1 1409 300 335 109 61 chr12 108064270 108064499 -13193031 + L1MD LINE L1 2944 3183 -2963 1 1409 24 0 0 0 chr12 108065275 108065299 -13192231 + AT_rich Low_complexity Low_complexity 1 24 0 1 1409 252 167 21 62 chr12 108065308 108065404 -13192126 + (TTATA)n Simple_repeat Simple_repeat 2 93 0 1 1409 378 0 0 0 chr12 108066705 108066747 -13190783 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1409 387 0 0 0 chr12 108066747 108066789 -13190741 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1409 181 303 88 29 chr12 108067263 108067331 -13190199 - L2 LINE L2 -2786 633 562 1 1409 660 307 78 27 chr12 108068406 108068664 -13188866 - B4A SINE B4 -20 272 2 1 1409 329 214 0 10 chr12 108069986 108070090 -13187440 + (CA)n Simple_repeat Simple_repeat 1 103 0 1 1409 492 258 0 0 chr12 108070110 108070288 -13187242 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1409 297 0 0 0 chr12 108070347 108070380 -13187150 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1409 450 0 0 0 chr12 108071592 108071642 -13185888 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1 1409 315 0 0 0 chr12 108072936 108072971 -13184559 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1409 795 226 122 30 chr12 108072979 108073216 -13184314 - B4 SINE B4 -31 261 3 1 1409 187 217 20 61 chr12 108073834 108073883 -13183647 + L2b LINE L2 3321 3367 -8 1 1409 264 302 12 0 chr12 108073884 108073970 -13183560 + GA-rich Low_complexity Low_complexity 2 88 0 1 1409 241 269 10 79 chr12 108074201 108074302 -13183228 + MER34A1 LTR ERV1 23 116 -471 1 1409 308 267 15 44 chr12 108075179 108075316 -13182214 + (ATGGTG)n Simple_repeat Simple_repeat 6 138 0 1 1409 270 326 11 0 chr12 108075498 108075587 -13181943 - ORR1E LTR MaLR -16 363 274 1 1409 340 338 42 42 chr12 108076130 108076297 -13181233 + Cheshire DNA MER1_type 1 167 -2253 1 1409 375 106 27 96 chr12 108076324 108076512 -13181018 + G-rich Low_complexity Low_complexity 6 180 0 1 1409 1874 220 34 26 chr12 108076518 108076933 -13180597 - MTD LTR MaLR 0 419 2 1 1409 402 303 57 31 chr12 108076934 108077128 -13180402 - ORR1E LTR MaLR -60 299 101 1 1409 509 248 85 8 chr12 108077146 108077276 -13180254 - ORR1E LTR MaLR -219 140 1 1 1409 720 35 0 0 chr12 108078340 108078427 -13179103 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1409 577 291 104 23 chr12 108078768 108079067 -13178463 + L1MC4 LINE L1 7272 7594 -448 1 1409 258 262 0 0 chr12 108079475 108079559 -13177971 + GA-rich Low_complexity Low_complexity 3 86 0 1 1409 414 0 0 0 chr12 108082067 108082113 -13175417 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1409 326 337 6 44 chr12 108082246 108082426 -13175104 + CT-rich Low_complexity Low_complexity 2 174 0 1 1409 215 375 0 23 chr12 108082362 108082493 -13175037 + C-rich Low_complexity Low_complexity 2 129 0 1 1409 280 346 90 66 chr12 108083062 108083306 -13174224 - B4A SINE B4 -41 251 2 1 1409 227 343 82 96 chr12 108083799 108084154 -13173376 - ORR1E LTR MaLR -1 358 9 1 1409 1253 166 4 35 chr12 108084192 108084423 -13173107 + URR1B DNA MER1_type 1 224 -1 1 1409 927 201 40 36 chr12 108085336 108085558 -13171972 + ID_B1 SINE B4 1 223 -1 1 1409 660 257 31 40 chr12 108085752 108085975 -13171555 + MER33 DNA MER1_type 1 221 -103 1 1409 638 103 74 0 chr12 108086920 108087130 -13170400 + (TAGA)n Simple_repeat Simple_repeat 1 225 0 1 1409 240 214 0 0 chr12 108087147 108087203 -13170327 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1409 186 43 0 0 chr12 108087203 108087226 -13170304 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1409 236 248 58 13 chr12 108087228 108087383 -13170147 + (TAGA)n Simple_repeat Simple_repeat 3 164 0 1 1409 585 0 0 0 chr12 108088007 108088072 -13169458 + (CAGCC)n Simple_repeat Simple_repeat 2 66 0 1 1409 228 273 72 32 chr12 108088278 108088403 -13169127 + RLTR22_Mur LTR ERVK 1319 1448 -400 1 1409 319 367 0 0 chr12 108088419 108088539 -13168991 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 1409 186 270 0 0 chr12 108088562 108088636 -13168894 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1409 857 283 38 60 chr12 108088699 108088966 -13168564 - B4A SINE B4 -31 261 1 1 1409 532 343 127 27 chr12 108089946 108090321 -13167209 - MT2A LTR ERVL -6 527 114 1 1409 801 21 0 0 chr12 108090321 108090416 -13167114 + (TC)n Simple_repeat Simple_repeat 1 95 0 1 1409 532 343 127 27 chr12 108090416 108090519 -13167011 - MT2A LTR ERVL -420 113 2 1 1409 258 250 15 108 chr12 108090527 108090657 -13166873 - Tigger2b DNA MER2_type -47 679 562 1 1409 455 237 43 17 chr12 108091077 108091193 -13166337 - L2b LINE L2 -3 3372 3254 1 1409 423 0 0 0 chr12 108093707 108093754 -13163776 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 1 1409 21 0 0 0 chr12 108096274 108096295 -13161235 + AT_rich Low_complexity Low_complexity 1 21 0 1 1409 21 0 0 0 chr12 108097226 108097247 -13160283 + AT_rich Low_complexity Low_complexity 1 21 0 1 1409 663 48 0 0 chr12 108097328 108097411 -13160119 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 1 1409 293 279 33 65 chr12 108097932 108098006 -13159524 - B4 SINE B4 0 292 224 1 1409 522 0 0 0 chr12 108098006 108098064 -13159466 + (TTGG)n Simple_repeat Simple_repeat 1 58 0 1 1409 293 279 33 65 chr12 108098064 108098081 -13159449 - B4 SINE B4 -69 223 205 1 1409 1192 55 7 0 chr12 108098213 108098359 -13159171 - B1_Mus1 SINE Alu -1 147 1 1 1409 257 282 0 34 chr12 108101276 108101364 -13156166 - Arthur1B DNA Tip100 -99 1126 1042 1 1409 350 208 26 13 chr12 108101578 108101656 -13155874 - PB1D10 SINE Alu -2 115 37 1 1409 2851 103 44 33 chr12 108101669 108102120 -13155410 - Lx3B LINE L1 -2 6971 6516 1 1409 623 381 32 26 chr12 108102250 108102630 -13154900 - Arthur1B DNA Tip100 -534 691 310 1 1409 25 0 0 0 chr12 108102839 108102864 -13154666 + AT_rich Low_complexity Low_complexity 1 25 0 1 1409 205 147 51 31 chr12 108103278 108103376 -13154154 + (TG)n Simple_repeat Simple_repeat 2 101 0 1 1409 749 339 12 24 chr12 108103474 108103722 -13153808 - ORR1D2 LTR MaLR 0 370 126 1 1409 382 322 0 9 chr12 108103895 108104011 -13153519 + PB1D10 SINE Alu 3 117 0 1 1409 369 177 0 0 chr12 108104320 108104399 -13153131 + (CACCAT)n Simple_repeat Simple_repeat 1 79 0 1 1409 739 308 62 11 chr12 108104700 108104976 -13152554 + B4 SINE B4 1 290 -2 1 1409 396 0 0 0 chr12 108104988 108105032 -13152498 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1409 27 49 0 0 chr12 108106117 108106158 -13151372 + AT_rich Low_complexity Low_complexity 1 41 0 1 1409 21 36 0 0 chr12 108107477 108107505 -13150025 + AT_rich Low_complexity Low_complexity 1 28 0 1 1409 386 313 45 73 chr12 108107632 108107877 -13149653 + B4A SINE B4 1 238 -54 1 1409 441 66 0 0 chr12 108107899 108107960 -13149570 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1409 432 313 91 44 chr12 108108150 108108447 -13149083 - MLT1B LTR MaLR -51 339 29 1 1409 432 97 0 0 chr12 108108533 108108595 -13148935 + (TTA)n Simple_repeat Simple_repeat 2 63 0 1 1409 1059 238 9 0 chr12 108111018 108111228 -13146302 + B3 SINE B2 5 216 0 1 1409 1116 278 163 19 chr12 108112634 108113052 -13144478 + Lx8 LINE L1 6989 7466 -7 1 1409 673 307 18 1 chr12 108113814 108113980 -13143550 + B3A SINE B2 4 169 -29 1 1409 642 58 0 0 chr12 108113980 108114067 -13143463 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1409 642 313 0 58 chr12 108114067 108114090 -13143440 + B3 SINE B2 164 182 -34 1 1409 27 73 0 0 chr12 108114141 108114196 -13143334 + AT_rich Low_complexity Low_complexity 1 55 0 1 1409 392 269 17 111 chr12 108114438 108114618 -13142912 - RSINE1 SINE B4 0 165 3 1 1409 1013 163 75 19 chr12 108114672 108114885 -13142645 + URR1B DNA MER1_type 1 225 0 1 1409 1123 11 0 86 chr12 108116154 108116351 -13141179 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1409 1112 88 0 0 chr12 108116363 108116510 -13141020 - B1_Mus1 SINE Alu 0 148 2 1 1409 269 326 75 30 chr12 108116614 108116813 -13140717 - MER33 DNA MER1_type -96 228 21 1 1409 388 315 122 19 chr12 108117692 108117954 -13139576 + B4A SINE B4 3 291 -1 1 1409 942 306 38 96 chr12 108118476 108118874 -13138656 + MTEa LTR MaLR 3 377 -2 1 1409 351 0 0 0 chr12 108119284 108119323 -13138207 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1409 887 18 0 9 chr12 108119427 108119537 -13137993 + (CTTTG)n Simple_repeat Simple_repeat 5 113 0 1 1409 670 143 16 49 chr12 108119540 108119724 -13137806 + CT-rich Low_complexity Low_complexity 1 178 0 1 1409 208 161 17 35 chr12 108119756 108119814 -13137716 + CT-rich Low_complexity Low_complexity 3 59 0 1 1409 230 189 57 0 chr12 108120790 108120843 -13136687 - ID_B1 SINE B4 -66 158 103 1 1409 2750 302 87 32 chr12 108120959 108122111 -13135419 - Lx8 LINE L1 0 7473 6252 1 1409 1134 90 0 0 chr12 108122111 108122255 -13135275 + B1_Mus1 SINE Alu 3 146 -2 1 1409 387 0 0 0 chr12 108122255 108122298 -13135232 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1409 2750 302 87 32 chr12 108122298 108122336 -13135194 - Lx8 LINE L1 -1222 6251 6217 1 1409 21 71 0 0 chr12 108122514 108122556 -13134974 + AT_rich Low_complexity Low_complexity 1 42 0 1 1409 767 294 19 23 chr12 108122590 108122806 -13134724 - B3 SINE B2 0 216 2 1 1409 405 102 0 0 chr12 108123476 108123535 -13133995 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1409 568 282 58 58 chr12 108123541 108123594 -13133936 - B4 SINE B4 -28 264 213 2 1409 261 0 0 0 chr12 108123594 108123623 -13133907 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 2 1409 568 282 58 58 chr12 108123623 108123742 -13133788 - B4 SINE B4 -80 212 92 2 1409 1115 148 0 2 chr12 108123742 108124366 -13133164 + (CA)n Simple_repeat Simple_repeat 1 623 0 2 1409 297 315 0 43 chr12 108124366 108124459 -13133071 - B4 SINE B4 -192 100 12 2 1409 26 0 0 0 chr12 108124473 108124499 -13133031 + AT_rich Low_complexity Low_complexity 1 26 0 2 1409 21 0 0 0 chr12 108125192 108125213 -13132317 + AT_rich Low_complexity Low_complexity 1 21 0 2 1409 234 0 0 0 chr12 108126162 108126188 -13131342 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1409 207 0 0 0 chr12 108126279 108126302 -13131228 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1409 703 281 45 66 chr12 108126566 108126810 -13130720 - B4A SINE B4 -10 282 44 2 1409 543 239 115 0 chr12 108126840 108126970 -13130560 - B3A SINE B2 -53 145 1 2 1409 187 227 0 0 chr12 108126994 108127038 -13130492 - MER5A DNA MER1_type -145 44 1 2 1409 456 239 12 4 chr12 108127209 108127329 -13130201 - PB1D10 SINE Alu -16 133 14 2 1409 713 135 5 48 chr12 108127522 108127709 -13129821 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1409 862 115 0 13 chr12 108127764 108127922 -13129608 + (TG)n Simple_repeat Simple_repeat 2 157 0 2 1409 630 274 60 12 chr12 108128375 108128541 -13128989 - B3 SINE B2 0 216 43 2 1409 546 294 87 40 chr12 108128636 108128912 -13128618 - L1MD3 LINE L1 -127 7868 7580 2 1409 363 121 0 0 chr12 108129270 108129328 -13128202 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1409 315 0 0 0 chr12 108129879 108129914 -13127616 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1409 358 222 11 22 chr12 108130037 108130217 -13127313 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1409 223 243 13 19 chr12 108130242 108130397 -13127133 + (CA)n Simple_repeat Simple_repeat 2 155 0 2 1409 466 182 25 6 chr12 108130429 108130589 -13126941 + (CA)n Simple_repeat Simple_repeat 2 164 0 2 1409 201 218 18 18 chr12 108130593 108130649 -13126881 + (CATA)n Simple_repeat Simple_repeat 4 59 0 2 1409 203 203 17 0 chr12 108130660 108130719 -13126811 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1409 625 144 19 12 chr12 108130764 108130926 -13126604 + (CA)n Simple_repeat Simple_repeat 1 163 0 2 1409 691 148 7 7 chr12 108130971 108131121 -13126409 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 1409 198 0 0 0 chr12 108132073 108132095 -13125435 + (TC)n Simple_repeat Simple_repeat 2 23 0 2 1409 470 143 36 24 chr12 108132095 108132260 -13125270 + (TG)n Simple_repeat Simple_repeat 1 167 0 2 1409 267 282 84 0 chr12 108132379 108132450 -13125080 + B3A SINE B2 23 99 -99 2 1409 186 133 0 0 chr12 108132453 108132483 -13125047 + (TCC)n Simple_repeat Simple_repeat 1 30 0 2 1409 225 154 0 0 chr12 108132764 108132803 -13124727 + T-rich Low_complexity Low_complexity 1 39 0 2 1409 207 154 0 0 chr12 108132850 108132876 -13124654 + polypurine Low_complexity Low_complexity 2 27 0 2 1409 354 61 0 0 chr12 108132876 108132925 -13124605 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1409 207 154 0 0 chr12 108132925 108132937 -13124593 + polypurine Low_complexity Low_complexity 28 39 0 2 1409 433 293 98 0 chr12 108133426 108133600 -13123930 - MER2 DNA MER2_type -60 285 95 2 1409 602 281 45 67 chr12 108133726 108133993 -13123537 + MTD LTR MaLR 1 261 -158 2 1409 575 224 77 21 chr12 108134037 108134200 -13123330 + MTD LTR MaLR 218 418 -1 2 1410 961 261 101 93 chr12 108135535 108135890 -13121640 - MTE2a LTR MaLR 0 379 22 2 1410 305 359 8 41 chr12 108138146 108138268 -13119262 + MIR SINE MIR 4 121 -141 2 1410 193 312 0 0 chr12 108139759 108139807 -13117723 + L2c LINE L2 3283 3330 -57 2 1410 409 271 92 8 chr12 108139940 108140070 -13117460 - MER3 DNA MER1_type -11 198 58 2 1410 592 229 150 17 chr12 108140637 108140810 -13116720 - B3 SINE B2 -13 203 8 2 1410 923 266 39 0 chr12 108141639 108141846 -13115684 + B3 SINE B2 2 216 0 2 1410 183 303 75 66 chr12 108142715 108142821 -13114709 + MIRc SINE MIR 15 121 -147 2 1410 194 331 63 40 chr12 108143037 108143163 -13114367 - MIRb SINE MIR -21 247 119 2 1410 184 213 120 60 chr12 108143259 108143359 -13114171 + MIRc SINE MIR 24 129 -139 2 1410 21 0 0 0 chr12 108143759 108143780 -13113750 + AT_rich Low_complexity Low_complexity 1 21 0 2 1410 513 0 0 0 chr12 108144503 108144560 -13112970 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1410 400 313 11 40 chr12 108145485 108145637 -13111893 - MER5A1 DNA MER1_type -4 162 14 2 1410 3362 33 10 0 chr12 108146005 108146397 -13111133 - MTA_Mm LTR MaLR 0 396 1 2 1410 247 208 38 0 chr12 108147189 108147242 -13110288 - Lx8 LINE L1 -197 7276 7222 2 1410 794 285 0 29 chr12 108147273 108147443 -13110087 - RSINE1 SINE B4 0 165 1 2 1410 219 139 0 0 chr12 108148395 108148431 -13109099 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2 1410 207 225 0 0 chr12 108148952 108149023 -13108507 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1410 504 224 0 0 chr12 108149074 108149244 -13108286 + (TG)n Simple_repeat Simple_repeat 1 170 0 2 1410 642 260 136 0 chr12 108149276 108149518 -13108012 - B4A SINE B4 -17 275 1 2 1410 482 0 17 0 chr12 108149968 108150026 -13107504 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1410 291 241 92 0 chr12 108150346 108150433 -13107097 - MIRb SINE MIR -136 132 38 2 1410 187 319 31 52 chr12 108150373 108150469 -13107061 - L2 LINE L2 -804 2615 2522 2 1410 280 287 55 18 chr12 108151168 108151278 -13106252 + LFSINE_Vert SINE SINE 5 118 -341 2 1410 591 169 0 0 chr12 108151773 108151897 -13105633 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1410 309 346 55 36 chr12 108152062 108152227 -13105303 - MER58A DNA MER1_type -44 180 13 2 1410 7997 69 23 5 chr12 108152261 108153350 -13104180 + L1_Mus3 LINE L1 5529 6637 -1 2 1410 382 240 173 60 chr12 108153486 108153619 -13103911 + RSINE1 SINE B4 3 150 -15 2 1410 336 143 0 0 chr12 108153619 108153675 -13103855 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1410 441 0 0 0 chr12 108155145 108155194 -13102336 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1410 236 293 0 0 chr12 108155360 108155435 -13102095 + PB1D10 SINE Alu 9 83 -34 2 1410 330 322 27 47 chr12 108155467 108155617 -13101913 + MLT1D LTR MaLR 355 501 -4 2 1410 966 227 0 29 chr12 108156220 108156424 -13101106 + B3A SINE B2 1 198 0 2 1410 251 262 0 24 chr12 108156657 108156739 -13100791 - HAL1 LINE L1 -444 2063 1984 2 1410 450 0 0 0 chr12 108157390 108157440 -13100090 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1410 267 54 0 0 chr12 108157440 108157477 -13100053 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1410 1016 47 40 18 chr12 108157754 108158043 -13099487 + (TAGA)n Simple_repeat Simple_repeat 1 295 0 2 1410 450 0 0 0 chr12 108158741 108158791 -13098739 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1410 437 230 0 0 chr12 108160583 108160670 -13096860 + ID_B1 SINE B4 138 224 0 2 1410 226 222 13 89 chr12 108161242 108161321 -13096209 + B2_Mm1a SINE B2 116 188 -5 2 1410 198 0 0 0 chr12 108161749 108161771 -13095759 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1410 659 269 6 24 chr12 108162487 108162651 -13094879 - RSINE1 SINE B4 -2 163 3 2 1410 466 318 8 0 chr12 108162676 108162808 -13094722 - MLT1A0 LTR MaLR 0 365 233 2 1410 1653 221 15 3 chr12 108162835 108163175 -13094355 - ORR1D1 LTR MaLR 0 374 31 2 1410 241 339 119 30 chr12 108163183 108163317 -13094213 - MLT1A0 LTR MaLR -216 149 4 2 1410 348 64 0 0 chr12 108163580 108163627 -13093903 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1410 594 60 0 0 chr12 108163627 108163709 -13093821 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 1410 443 132 11 0 chr12 108163730 108163821 -13093709 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1410 403 335 13 32 chr12 108164300 108164457 -13093073 + ORR1E LTR MaLR 22 175 -184 2 1410 230 347 103 14 chr12 108164938 108165084 -13092446 - MER63A DNA AcHobo 0 210 52 2 1410 193 137 59 0 chr12 108165922 108165973 -13091557 + GA-rich Low_complexity Low_complexity 2 55 0 2 1410 261 83 0 0 chr12 108167707 108167743 -13089787 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1410 1111 269 14 10 chr12 108168522 108168811 -13088719 - B4A SINE B4 -1 291 2 2 1410 274 77 76 13 chr12 108168817 108168896 -13088634 + T-rich Low_complexity Low_complexity 2 85 0 2 1410 373 319 61 68 chr12 108171480 108171492 -13086038 - RSINE1 SINE B4 -10 155 145 2 1410 504 32 0 0 chr12 108171492 108171554 -13085976 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1410 373 319 61 68 chr12 108171554 108171689 -13085841 - RSINE1 SINE B4 -21 144 9 2 1410 225 255 0 18 chr12 108171723 108171779 -13085751 + GA-rich Low_complexity Low_complexity 3 57 0 2 1410 198 0 0 0 chr12 108171779 108171801 -13085729 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1410 338 100 33 22 chr12 108171902 108171994 -13085536 + T-rich Low_complexity Low_complexity 2 94 0 2 1410 1177 76 0 0 chr12 108171999 108172144 -13085386 - B1_Mus2 SINE Alu 0 147 3 2 1410 23 0 0 0 chr12 108172948 108172971 -13084559 + AT_rich Low_complexity Low_complexity 1 23 0 2 1410 435 38 0 0 chr12 108175092 108175145 -13082385 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1410 226 270 8 23 chr12 108175424 108175553 -13081977 + (CAT)n Simple_repeat Simple_repeat 2 128 0 2 1410 382 301 0 54 chr12 108175558 108175688 -13081842 + (CACCAT)n Simple_repeat Simple_repeat 2 124 0 2 1410 210 254 0 63 chr12 108176491 108176554 -13080976 + G-rich Low_complexity Low_complexity 2 60 0 2 1410 25 31 0 0 chr12 108176619 108176651 -13080879 + AT_rich Low_complexity Low_complexity 1 32 0 2 1410 219 285 7 14 chr12 108178096 108178242 -13079288 + CT-rich Low_complexity Low_complexity 1 145 0 2 1410 556 92 9 44 chr12 108178783 108178897 -13078633 + (GGGGA)n Simple_repeat Simple_repeat 2 111 0 2 1410 700 300 85 21 chr12 108179054 108179384 -13078146 + MLT1D LTR MaLR 1 351 -154 2 1410 1591 222 132 0 chr12 108179440 108179810 -13077720 - MTD LTR MaLR 0 419 1 2 1410 255 313 89 14 chr12 108180280 108180444 -13077086 + MER106B DNA MER1_type 916 1013 -46 2 1410 312 244 78 0 chr12 108180768 108180858 -13076672 - MER2B DNA MER2_type -48 288 192 2 1410 225 179 26 0 chr12 108181228 108181267 -13076263 - L1MD3 LINE L1 -611 7384 7345 2 1410 459 0 0 0 chr12 108184350 108184401 -13073129 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1410 459 35 0 0 chr12 108184728 108184785 -13072745 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1410 782 282 156 8 chr12 108185196 108185446 -13072084 + B4 SINE B4 2 288 -4 3 1410 486 173 0 0 chr12 108185490 108185594 -13071936 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1410 223 185 46 0 chr12 108186298 108186363 -13071167 + (TTTA)n Simple_repeat Simple_repeat 1 68 0 3 1410 456 319 62 21 chr12 108186761 108186905 -13070625 + RSINE1 SINE B4 2 151 -14 3 1410 1116 138 32 47 chr12 108187039 108187229 -13070301 - B2_Mm2 SINE B2 -7 188 2 3 1410 1078 286 111 26 chr12 108187586 108187849 -13069681 + Lx8 LINE L1 6966 7233 -240 3 1410 342 0 0 0 chr12 108187849 108187887 -13069643 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1410 1078 286 111 26 chr12 108187887 108188090 -13069440 + Lx8 LINE L1 7234 7471 -2 3 1410 2179 160 34 26 chr12 108188467 108188845 -13068685 - MTC LTR MaLR -40 381 1 3 1410 787 211 55 50 chr12 108188909 108189109 -13068421 - RMER15 LTR ERVL -353 222 22 3 1410 240 350 42 92 chr12 108190148 108190387 -13067143 + MIR SINE MIR 16 242 -26 3 1410 802 285 65 42 chr12 108191307 108191348 -13066182 + Lx8 LINE L1 6819 6854 -619 3 1410 315 0 0 0 chr12 108191348 108191383 -13066147 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1410 802 285 65 42 chr12 108191383 108191649 -13065881 + Lx8 LINE L1 6855 7132 -341 3 1410 22 0 0 0 chr12 108191762 108191784 -13065746 + AT_rich Low_complexity Low_complexity 1 22 0 3 1410 204 235 27 81 chr12 108192968 108193042 -13064488 - MIR SINE MIR -173 89 20 3 1410 702 213 0 0 chr12 108193376 108193531 -13063999 + CT-rich Low_complexity Low_complexity 2 156 0 3 1410 267 169 0 0 chr12 108195003 108195074 -13062456 + (TTG)n Simple_repeat Simple_repeat 2 72 0 3 1410 204 40 0 0 chr12 108195185 108195210 -13062320 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3 1410 244 354 30 36 chr12 108195448 108195615 -13061915 + RMER1C Other Other 516 681 -661 3 1410 576 356 67 38 chr12 108196812 108197156 -13060374 - MLT1A LTR MaLR -4 370 17 3 1410 505 358 0 0 chr12 108197836 108198015 -13059515 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 3 1410 274 344 23 39 chr12 108198935 108199065 -13058465 - Tigger5 DNA MER2_type 0 2406 2279 3 1410 570 271 0 14 chr12 108199138 108199280 -13058250 - B4 SINE B4 -28 264 125 3 1410 231 269 0 0 chr12 108199308 108199360 -13058170 - B4A SINE B4 -233 59 8 3 1410 238 295 0 112 chr12 108199389 108199496 -13058034 - Tigger5 DNA MER2_type -141 2265 2171 3 1410 234 186 47 0 chr12 108200198 108200241 -13057289 - L4 LINE RTE -206 1823 1779 3 1410 180 0 0 0 chr12 108201938 108201958 -13055572 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1410 694 277 21 47 chr12 108202099 108202292 -13055238 - B3A SINE B2 -9 189 2 3 1410 428 326 39 53 chr12 108202383 108202590 -13054940 - MER58B DNA MER1_type -15 326 123 3 1410 455 0 18 0 chr12 108202590 108202645 -13054885 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1410 1081 118 196 35 chr12 108202648 108203000 -13054530 + MERVL_2A-int LTR ERVL 5331 5696 -65 3 1410 3473 82 24 6 chr12 108203004 108203470 -13054060 + MT2C_Mm LTR ERVL 2 475 0 3 1410 458 324 70 62 chr12 108203734 108204016 -13053514 - B4 SINE B4 -18 274 27 3 1410 689 203 272 95 chr12 108204029 108204323 -13053207 + ORR1D1 LTR MaLR 27 372 -2 3 1410 557 315 43 51 chr12 108204473 108204727 -13052803 - Charlie12 DNA MER1_type -2618 255 4 3 1410 707 237 14 91 chr12 108204519 108204728 -13052802 + RMER30 DNA MER1_type 7 199 -3 3 1410 741 218 62 34 chr12 108205041 108205250 -13052280 + B3 SINE B2 2 216 0 3 1410 239 276 111 59 chr12 108205648 108205783 -13051747 + L1MA5A LINE L1 6149 6290 -7 3 1410 883 146 0 48 chr12 108207016 108207182 -13050348 + URR1A DNA MER1_type 69 226 0 3 1410 1197 235 48 48 chr12 108207479 108207855 -13049675 + MTE2b LTR MaLR 1 376 -3 3 1410 1024 325 43 39 chr12 108209001 108209465 -13048065 - MT2A LTR ERVL -9 524 59 3 1410 370 293 30 85 chr12 108209384 108209548 -13047982 - MTD LTR MaLR -253 166 12 3 1410 734 262 64 25 chr12 108210133 108210342 -13047188 - MER33 DNA MER1_type -13 311 91 3 1410 387 0 0 0 chr12 108210342 108210385 -13047145 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1410 734 262 64 25 chr12 108210385 108210457 -13047073 - MER33 DNA MER1_type -234 90 19 3 1410 782 356 21 24 chr12 108210679 108210967 -13046563 + B4A SINE B4 3 289 -3 3 1410 351 113 0 0 chr12 108211024 108211077 -13046453 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1410 638 266 18 48 chr12 108212039 108212205 -13045325 + RSINE1 SINE B4 3 163 -2 3 1410 1583 241 55 33 chr12 108212702 108213063 -13044467 + MTE2b LTR MaLR 3 371 -8 3 1410 21 0 0 0 chr12 108213254 108213275 -13044255 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 280 286 95 0 chr12 108214766 108214850 -13042680 + B4A SINE B4 55 146 -146 3 1410 562 295 0 0 chr12 108214797 108214926 -13042604 + B1F1 SINE Alu 9 137 -12 3 1410 421 306 150 76 chr12 108215206 108215560 -13041970 + MLT1A1 LTR MaLR 26 405 -3 3 1410 481 247 222 6 chr12 108215970 108216150 -13041380 + B4A SINE B4 3 221 -71 3 1410 2059 163 101 21 chr12 108216157 108216545 -13040985 + RMER1B Other Other 643 1061 -5 3 1410 414 184 91 9 chr12 108216565 108216675 -13040855 + RMER17B LTR ERVK 343 461 -497 3 1410 312 211 0 0 chr12 108216821 108216897 -13040633 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 1410 316 240 16 0 chr12 108217421 108217542 -13039988 + GA-rich Low_complexity Low_complexity 4 126 0 3 1410 310 341 35 40 chr12 108217547 108217675 -13039855 + HAL1-3A_ME LINE L1 2285 2412 -446 3 1410 1172 106 0 6 chr12 108217675 108217855 -13039675 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 3 1410 310 341 35 40 chr12 108217855 108217900 -13039630 + HAL1-3A_ME LINE L1 2413 2457 -401 3 1410 216 259 0 0 chr12 108219128 108219209 -13038321 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1410 540 45 0 0 chr12 108219209 108219276 -13038254 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1410 460 29 0 42 chr12 108219302 108219374 -13038156 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 3 1410 1125 75 7 0 chr12 108219382 108219529 -13038001 - B1_Mus1 SINE Alu 0 148 1 3 1410 866 237 46 21 chr12 108219694 108219931 -13037599 + L1MA7 LINE L1 6016 6258 -33 3 1410 450 0 0 0 chr12 108220926 108220976 -13036554 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1410 431 63 16 0 chr12 108220976 108221038 -13036492 + (TATG)n Simple_repeat Simple_repeat 3 66 0 3 1410 2863 129 0 0 chr12 108221594 108222012 -13035518 - L1_Mm LINE L1 -910 4973 4556 3 1410 3534 68 14 41 chr12 108222012 108222500 -13035030 + L1_Mus2 LINE L1 6092 6566 0 3 1410 1003 244 181 41 chr12 108223172 108223510 -13034020 - MTD LTR MaLR -17 402 18 3 1410 1222 234 70 49 chr12 108224081 108224409 -13033121 - MTEa LTR MaLR -12 367 33 3 1410 392 300 8 8 chr12 108224760 108224881 -13032649 + MTD LTR MaLR 18 138 -281 3 1410 727 275 76 8 chr12 108224887 108225151 -13032379 + Lx9 LINE L1 7222 7503 -141 3 1410 3036 74 0 45 chr12 108225230 108225654 -13031876 + MTB_Mm LTR MaLR 3 407 0 3 1410 348 24 0 0 chr12 108226407 108226448 -13031082 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1410 610 258 79 53 chr12 108226512 108226815 -13030715 - RLTR15 LTR ERVK -47 312 2 3 1410 513 278 0 9 chr12 108226816 108226932 -13030598 - RSINE1 SINE B4 -49 116 2 3 1410 597 185 29 6 chr12 108227581 108227755 -13029775 + CT-rich Low_complexity Low_complexity 2 179 0 3 1410 305 327 58 45 chr12 108227760 108227914 -13029616 - HAL1-3A_ME LINE L1 -419 2439 2284 3 1410 203 218 18 0 chr12 108227976 108228031 -13029499 + CT-rich Low_complexity Low_complexity 5 60 0 3 1410 988 286 82 36 chr12 108229519 108229997 -13027533 + L1MA5 LINE L1 5431 5930 -370 3 1410 183 288 70 93 chr12 108230407 108230579 -13026951 - L4 LINE RTE -1599 430 263 3 1410 404 206 23 8 chr12 108230974 108231106 -13026424 + GA-rich Low_complexity Low_complexity 1 134 0 3 1410 579 187 29 6 chr12 108231120 108231292 -13026238 + GA-rich Low_complexity Low_complexity 1 176 0 3 1410 720 0 0 0 chr12 108232752 108232832 -13024698 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 3 1410 688 325 63 35 chr12 108234795 108235079 -13022451 + B4A SINE B4 1 292 0 3 1410 261 0 0 0 chr12 108236174 108236203 -13021327 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1410 358 263 134 8 chr12 108236203 108236322 -13021208 - B4A SINE B4 -22 270 137 3 1410 679 294 46 10 chr12 108236527 108236723 -13020807 - B4A SINE B4 -2 290 88 3 1410 188 288 90 15 chr12 108236744 108236811 -13020719 - MER5A DNA MER1_type -83 106 35 3 1410 364 227 11 11 chr12 108237569 108237658 -13019872 + HAL1-3A_ME LINE L1 1938 2026 -832 3 1410 234 279 0 0 chr12 108237665 108237751 -13019779 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 1410 241 255 118 39 chr12 108238235 108238337 -13019193 + MER53 DNA hAT 54 163 -30 3 1410 1379 213 142 38 chr12 108238452 108238469 -13019061 + MTD LTR MaLR 38 46 -373 3 1410 1218 28 0 20 chr12 108238469 108238617 -13018913 - B1_Mus1 SINE Alu -2 146 2 3 1410 1379 213 142 38 chr12 108238617 108238945 -13018585 + MTD LTR MaLR 47 419 0 3 1410 1563 247 21 16 chr12 108238956 108239331 -13018199 + MTE2a LTR MaLR 3 379 0 3 1410 213 239 56 56 chr12 108240098 108240169 -13017361 + MIRc SINE MIR 85 155 -113 3 1410 485 301 114 14 chr12 108240218 108240437 -13017093 + B4A SINE B4 20 260 -32 3 1410 1231 55 0 0 chr12 108240511 108240657 -13016873 + B1_Mm SINE Alu 2 147 0 3 1410 206 118 0 0 chr12 108240657 108240691 -13016839 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1410 342 0 0 0 chr12 108240700 108240738 -13016792 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1410 270 313 36 12 chr12 108240834 108240918 -13016612 - RMER30 DNA MER1_type -1 201 116 3 1410 1301 191 87 29 chr12 108240930 108241275 -13016255 - Lx9 LINE L1 -7 7637 7273 3 1410 207 218 0 0 chr12 108241457 108241512 -13016018 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1410 753 156 102 0 chr12 108241512 108241640 -13015890 - Lx9 LINE L1 -384 7260 7120 3 1410 282 183 30 24 chr12 108241664 108241832 -13015698 + (TA)n Simple_repeat Simple_repeat 2 170 0 3 1410 230 282 8 0 chr12 108242836 108242967 -13014563 + (TCCA)n Simple_repeat Simple_repeat 1 132 0 4 1410 574 220 11 0 chr12 108243015 108243192 -13014338 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 4 1410 181 333 0 43 chr12 108243867 108243936 -13013594 + L2c LINE L2 2836 2901 -518 4 1410 197 368 0 50 chr12 108244503 108244583 -13012947 + L2c LINE L2 3272 3347 -40 4 1410 23 33 0 0 chr12 108245661 108245691 -13011839 + AT_rich Low_complexity Low_complexity 1 30 0 4 1410 369 0 0 0 chr12 108246188 108246229 -13011301 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1410 1451 198 170 35 chr12 108247967 108248338 -13009192 - MTC LTR MaLR 0 421 1 4 1410 315 0 0 0 chr12 108249643 108249678 -13007852 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1410 360 0 0 0 chr12 108249678 108249717 -13007813 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1410 482 368 34 93 chr12 108250933 108251320 -13006210 - MLT1J LTR MaLR -148 364 1 4 1410 188 125 50 0 chr12 108251823 108251863 -13005667 + GA-rich Low_complexity Low_complexity 4 45 0 4 1410 899 136 0 13 chr12 108251877 108252034 -13005496 + (GAGAA)n Simple_repeat Simple_repeat 2 156 0 4 1410 399 301 53 25 chr12 108252478 108252641 -13004889 + B4 SINE B4 2 174 -118 4 1410 360 138 0 0 chr12 108252765 108252830 -13004700 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1410 498 33 0 0 chr12 108252993 108253053 -13004477 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1410 351 290 21 0 chr12 108253635 108253728 -13003802 + LTR90B LTR LTR 657 751 -45 4 1410 261 119 0 0 chr12 108254044 108254086 -13003444 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1410 1164 114 0 0 chr12 108254086 108254262 -13003268 + (GGAA)n Simple_repeat Simple_repeat 2 177 0 4 1410 428 258 11 0 chr12 108254506 108254599 -13002931 + PB1D10 SINE Alu 23 116 -1 4 1410 280 231 0 52 chr12 108254668 108254823 -13002707 + GA-rich Low_complexity Low_complexity 1 147 0 4 1410 512 214 4 34 chr12 108254844 108255111 -13002419 + GA-rich Low_complexity Low_complexity 1 258 0 4 1410 498 17 0 0 chr12 108255794 108255853 -13001677 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 4 1410 270 328 111 33 chr12 108257345 108257525 -13000005 - MIRb SINE MIR -41 227 34 4 1410 227 191 0 21 chr12 108258362 108258410 -12999120 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1410 579 228 93 13 chr12 108258413 108258564 -12998966 - RSINE1 SINE B4 -1 164 2 4 1410 611 289 27 0 chr12 108258899 108259048 -12998482 + RSINE1 SINE B4 3 155 -10 4 1410 486 0 0 0 chr12 108259773 108259827 -12997703 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1410 570 54 0 0 chr12 108259974 108260048 -12997482 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 4 1410 745 241 67 41 chr12 108260118 108260386 -12997144 - B4A SINE B4 -15 277 3 4 1410 1102 304 43 11 chr12 108261696 108262046 -12995484 - MTEa LTR MaLR -1 378 18 4 1410 198 338 0 51 chr12 108262288 108262366 -12995164 - L2c LINE L2 -214 3173 3100 4 1410 1220 278 79 13 chr12 108262536 108262929 -12994601 - MTD LTR MaLR 0 419 1 4 1410 823 319 59 49 chr12 108263258 108263473 -12994057 + B4 SINE B4 3 213 -79 4 1410 486 0 0 0 chr12 108263473 108263527 -12994003 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1410 823 319 59 49 chr12 108263527 108263598 -12993932 + B4 SINE B4 214 292 0 4 1410 307 333 20 10 chr12 108263753 108263853 -12993677 - MTEb LTR MaLR 0 379 279 4 1410 467 269 8 32 chr12 108263948 108264071 -12993459 - MTD LTR MaLR -17 402 283 4 1410 254 271 8 16 chr12 108264072 108264196 -12993334 + L1M5 LINE L1 3378 3500 -2646 4 1410 768 178 86 3 chr12 108264298 108264481 -12993049 - ORR1D1 LTR MaLR -28 346 149 4 1410 654 201 0 33 chr12 108264483 108264663 -12992867 + GA-rich Low_complexity Low_complexity 3 176 0 4 1410 231 188 0 0 chr12 108264655 108264703 -12992827 + G-rich Low_complexity Low_complexity 2 49 0 4 1411 320 297 10 10 chr12 108265630 108265732 -12991798 - L1M5 LINE L1 -460 5664 5563 4 1411 207 0 0 0 chr12 108266869 108266892 -12990638 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1411 678 25 0 0 chr12 108266892 108266971 -12990559 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1411 2846 82 47 2 chr12 108267004 108267406 -12990124 - BGLII LTR ERVK 0 421 2 4 1411 435 310 95 103 chr12 108267446 108267512 -12990018 - B4A SINE B4 -20 272 228 4 1411 856 195 104 35 chr12 108267512 108267714 -12989816 - B3 SINE B2 0 216 1 4 1411 435 310 95 103 chr12 108267714 108267920 -12989610 - B4A SINE B4 -65 227 2 4 1411 228 67 0 0 chr12 108269041 108269071 -12988459 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1411 205 226 12 12 chr12 108269073 108269158 -12988372 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 1411 786 244 18 66 chr12 108269333 108269561 -12987969 - ID_B1 SINE B4 -3 221 5 4 1411 6153 121 38 10 chr12 108269562 108270494 -12987036 - RMER17B LTR ERVK 0 958 1 4 1411 384 22 0 0 chr12 108270753 108270798 -12986732 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1411 180 0 0 0 chr12 108271359 108271379 -12986151 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1411 448 208 83 0 chr12 108271476 108271572 -12985958 - B4 SINE B4 -188 104 1 4 1411 1337 247 69 37 chr12 108273104 108273453 -12984077 - MTEb LTR MaLR -13 366 7 4 1411 189 0 0 0 chr12 108274121 108274142 -12983388 + (GAA)n Simple_repeat Simple_repeat 1 21 0 4 1411 244 255 19 105 chr12 108274602 108274707 -12982823 - Charlie5 DNA MER1_type -771 1853 1758 4 1411 544 265 46 7 chr12 108275583 108275735 -12981795 + Lx6 LINE L1 7277 7434 -26 4 1411 192 200 0 0 chr12 108275769 108275809 -12981721 + (CATG)n Simple_repeat Simple_repeat 3 42 0 4 1411 217 358 25 0 chr12 108275833 108275914 -12981616 - RSINE1 SINE B4 -4 161 79 4 1411 1715 187 107 83 chr12 108276663 108277111 -12980419 + RMER15 LTR ERVL 117 575 0 4 1411 236 296 40 30 chr12 108277368 108277418 -12980112 + MLT1H LTR MaLR 432 482 -67 4 1411 243 0 0 0 chr12 108277418 108277445 -12980085 + (TGG)n Simple_repeat Simple_repeat 2 28 0 4 1411 236 296 40 30 chr12 108277445 108277495 -12980035 + MLT1H LTR MaLR 483 533 -16 4 1411 326 309 49 35 chr12 108277739 108277883 -12979647 + RSINE1 SINE B4 15 160 -5 4 1411 202 345 11 11 chr12 108279087 108279175 -12978355 + (TCCA)n Simple_repeat Simple_repeat 3 90 0 4 1411 374 282 10 0 chr12 108279485 108279588 -12977942 - MLT1B LTR MaLR -16 374 271 4 1411 460 133 55 31 chr12 108281958 108282121 -12975409 + (TG)n Simple_repeat Simple_repeat 2 168 0 4 1411 335 124 82 7 chr12 108282136 108282282 -12975248 + (TG)n Simple_repeat Simple_repeat 2 158 0 4 1411 969 139 30 0 chr12 108282363 108282529 -12975001 - URR1A DNA MER1_type 0 226 56 4 1411 375 290 52 36 chr12 108282529 108282550 -12974980 + CYRA11_Mm Unknown Y-chromosome 202 361 -256 4 1411 1203 290 87 51 chr12 108282554 108283211 -12974319 + L1_Rod LINE L1 4754 5436 -411 4 1411 2422 126 37 53 chr12 108283211 108283648 -12973882 + RLTR23 LTR ERV1 1 430 0 4 1411 1203 290 87 51 chr12 108283648 108283691 -12973839 + L1_Rod LINE L1 5437 5479 -368 4 1411 342 268 54 23 chr12 108283698 108283828 -12973702 + MTEa LTR MaLR 246 379 0 4 1411 186 254 61 45 chr12 108284066 108284132 -12973398 - L4 LINE RTE -210 1819 1753 4 1411 792 175 7 14 chr12 108284254 108284399 -12973131 - B1_Mur2 SINE Alu 0 149 6 4 1411 590 107 9 19 chr12 108284987 108285092 -12972438 - URR1B DNA MER1_type -36 189 86 4 1411 1082 212 14 0 chr12 108286642 108286854 -12970676 + B3 SINE B2 1 215 -1 4 1411 21 0 0 0 chr12 108287706 108287727 -12969803 + AT_rich Low_complexity Low_complexity 1 21 0 4 1411 407 128 12 0 chr12 108287872 108287958 -12969572 + (TC)n Simple_repeat Simple_repeat 1 87 0 4 1411 188 0 0 69 chr12 108288313 108288342 -12969188 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 4 1411 349 296 24 8 chr12 108288365 108288491 -12969039 - Lx8 LINE L1 -379 7094 6967 4 1411 269 330 17 17 chr12 108290456 108290573 -12966957 - L2 LINE L2 -945 2474 2358 4 1411 912 172 0 0 chr12 108290784 108290953 -12966577 + GA-rich Low_complexity Low_complexity 2 170 0 4 1411 2378 211 183 8 chr12 108293076 108293726 -12963804 - L1_Mur3 LINE L1 -189 5691 4928 4 1411 461 271 0 0 chr12 108293739 108293846 -12963684 + Lx7 LINE L1 7215 7321 -375 4 1411 653 230 3 5 chr12 108293851 108294226 -12963304 + (TG)n Simple_repeat Simple_repeat 1 373 0 4 1411 200 180 0 103 chr12 108294231 108294299 -12963231 + T-rich Low_complexity Low_complexity 5 65 0 4 1411 199 177 16 16 chr12 108294309 108294347 -12963183 + GA-rich Low_complexity Low_complexity 1 38 0 4 1411 384 82 0 0 chr12 108294347 108294408 -12963122 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 4 1411 199 177 16 16 chr12 108294408 108294432 -12963098 + polypurine Low_complexity Low_complexity 39 63 0 4 1411 252 0 0 0 chr12 108295793 108295821 -12961709 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1411 361 287 59 10 chr12 108295896 108295998 -12961532 + B4A SINE B4 186 292 0 4 1411 612 175 0 0 chr12 108296004 108296130 -12961400 + (CA)n Simple_repeat Simple_repeat 2 127 0 4 1411 952 219 73 147 chr12 108296295 108296690 -12960840 - MTE2a LTR MaLR -12 367 2 4 1411 237 316 20 10 chr12 108296794 108296893 -12960637 + MTEa LTR MaLR 247 346 -33 4 1411 618 14 0 0 chr12 108297624 108297695 -12959835 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 1411 244 253 36 12 chr12 108299162 108299246 -12958284 - MTEa LTR MaLR -6 373 288 4 1411 278 264 38 0 chr12 108299412 108299506 -12958024 - MLT2B2 LTR ERVL -455 99 3 4 1411 297 244 45 33 chr12 108300357 108300468 -12957062 - MLT1A1 LTR MaLR -37 371 223 4 1411 2032 160 26 56 chr12 108300617 108301007 -12956523 + ORR1C1 LTR MaLR 1 378 0 4 1411 544 270 61 0 chr12 108301403 108301566 -12955964 - MER104 DNA Tc2 -6 175 3 4 1411 26 64 0 0 chr12 108301770 108301817 -12955713 + AT_rich Low_complexity Low_complexity 1 47 0 4 1411 246 74 56 0 chr12 108302102 108302156 -12955374 + (GGGAGA)n Simple_repeat Simple_repeat 2 58 0 4 1411 457 306 61 15 chr12 108302158 108302354 -12955176 + MTE2a LTR MaLR 173 377 -2 4 1411 885 101 0 0 chr12 108302517 108302656 -12954874 + (TC)n Simple_repeat Simple_repeat 1 139 0 4 1411 189 0 0 0 chr12 108302656 108302677 -12954853 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1411 346 256 34 17 chr12 108302745 108302864 -12954666 - L1MEc LINE L1 -3060 3259 3139 5 1411 282 333 128 17 chr12 108302959 108303249 -12954281 - L1MEc LINE L1 -5048 1352 1031 5 1411 341 164 14 0 chr12 108303873 108303946 -12953584 + GA-rich Low_complexity Low_complexity 3 76 0 5 1411 446 0 19 0 chr12 108304325 108304379 -12953151 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 1411 261 243 0 43 chr12 108304426 108304504 -12953026 - MIRm SINE MIR -111 157 86 5 1411 351 314 172 50 chr12 108305315 108305404 -12952126 + MTEa LTR MaLR 67 183 -196 5 1411 504 0 0 0 chr12 108305404 108305460 -12952070 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1411 351 314 172 50 chr12 108305460 108305608 -12951922 + MTEa LTR MaLR 184 333 -46 5 1411 405 0 0 0 chr12 108306380 108306425 -12951105 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1411 588 293 162 43 chr12 108306895 108307266 -12950264 - MER54A LTR ERVL -5 896 482 5 1411 180 0 0 0 chr12 108307303 108307323 -12950207 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1411 423 0 0 0 chr12 108307323 108307369 -12950161 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1411 229 359 53 0 chr12 108307514 108307645 -12949885 - MER54A LTR ERVL -744 157 20 5 1411 244 340 27 20 chr12 108308118 108308268 -12949262 + MLT1B LTR MaLR 108 258 -132 5 1411 622 24 24 0 chr12 108308588 108308672 -12948858 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 5 1411 217 0 61 0 chr12 108308704 108308737 -12948793 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1411 909 150 0 14 chr12 108308737 108308879 -12948651 - B1_Mus1 SINE Alu -8 140 1 5 1411 236 256 179 0 chr12 108309691 108309769 -12947761 + Lx8 LINE L1 7380 7471 -2 5 1411 1195 330 19 49 chr12 108311088 108311623 -12945907 - Tigger7 DNA MER2_type -1960 531 13 5 1411 586 299 164 44 chr12 108312124 108312248 -12945282 - Lx9 LINE L1 -27 7617 7484 5 1411 306 0 0 0 chr12 108312248 108312282 -12945248 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1411 586 299 164 44 chr12 108312282 108312699 -12944831 - Lx9 LINE L1 -161 7483 7013 5 1411 295 364 54 31 chr12 108312774 108313032 -12944498 - MER21B LTR ERV1 -153 710 447 5 1411 274 360 9 9 chr12 108313139 108313254 -12944276 - MER21B LTR ERV1 -727 136 22 5 1411 340 52 0 49 chr12 108313518 108313579 -12943951 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 5 1411 726 141 0 0 chr12 108314167 108314309 -12943221 + (TG)n Simple_repeat Simple_repeat 2 143 0 5 1411 258 106 0 0 chr12 108314304 108314351 -12943179 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1411 573 15 0 0 chr12 108314353 108314419 -12943111 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1411 614 280 99 0 chr12 108314438 108314649 -12942881 - B4A SINE B4 -52 240 9 5 1411 410 238 2 4 chr12 108318860 108318955 -12938575 + B4A SINE B4 2 96 -69 5 1411 240 256 116 116 chr12 108318972 108319118 -12938412 + B4A SINE B4 69 215 -77 5 1411 832 215 22 28 chr12 108319124 108319306 -12938224 + B3A SINE B2 4 184 -14 5 1411 561 185 0 0 chr12 108319307 108319426 -12938104 + (CA)n Simple_repeat Simple_repeat 1 119 0 5 1411 1536 90 0 5 chr12 108319476 108319700 -12937830 - L1Md_Gf LINE L1 -6015 507 285 5 1411 420 160 0 0 chr12 108319708 108319808 -12937722 + GA-rich Low_complexity Low_complexity 1 100 0 5 1411 203 379 0 0 chr12 108319860 108319955 -12937575 + (CA)n Simple_repeat Simple_repeat 2 96 0 5 1411 23 33 0 0 chr12 108319960 108319990 -12937540 + AT_rich Low_complexity Low_complexity 1 30 0 5 1411 415 48 32 0 chr12 108323712 108323774 -12933756 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1411 396 103 0 0 chr12 108325158 108325216 -12932314 + (TCC)n Simple_repeat Simple_repeat 2 59 0 5 1411 186 236 0 0 chr12 108325207 108325262 -12932268 + CT-rich Low_complexity Low_complexity 1 55 0 5 1411 306 327 82 29 chr12 108326113 108326283 -12931247 - ID_B1 SINE B4 0 224 46 5 1411 441 0 0 0 chr12 108326383 108326432 -12931098 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1411 2529 298 96 19 chr12 108326598 108326988 -12930542 - Lx8 LINE L1 -75 7398 6957 5 1411 669 25 0 0 chr12 108326988 108327067 -12930463 + (GA)n Simple_repeat Simple_repeat 2 80 0 5 1411 2529 298 96 19 chr12 108327067 108327714 -12929816 - Lx8 LINE L1 -517 6956 6283 5 1411 261 323 151 39 chr12 108327730 108327853 -12929677 + Lx8 LINE L1 6034 6185 -1288 5 1411 474 18 0 0 chr12 108327853 108327908 -12929622 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1411 261 323 151 39 chr12 108327908 108328016 -12929514 + Lx8 LINE L1 6186 6291 -1182 5 1411 21 36 0 0 chr12 108330011 108330039 -12927491 + AT_rich Low_complexity Low_complexity 1 28 0 5 1411 549 94 0 0 chr12 108331170 108331255 -12926275 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1411 761 280 48 22 chr12 108333996 108334226 -12923304 + B4A SINE B4 2 237 -55 5 1411 459 0 0 0 chr12 108334291 108334342 -12923188 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1411 288 191 34 0 chr12 108335681 108335770 -12921760 + GA-rich Low_complexity Low_complexity 2 93 0 5 1411 1551 188 88 6 chr12 108336203 108336546 -12920984 - ORR1D1 LTR MaLR -3 371 1 5 1411 261 250 128 21 chr12 108337377 108337471 -12920059 + MLT1A0 LTR MaLR 25 128 -237 5 1411 189 0 0 0 chr12 108337709 108337730 -12919800 + (TTGTG)n Simple_repeat Simple_repeat 4 24 0 5 1411 339 212 0 0 chr12 108338051 108338136 -12919394 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1411 632 300 83 15 chr12 108338878 108339142 -12918388 + B4A SINE B4 3 284 -8 5 1411 259 298 11 11 chr12 108339147 108339242 -12918288 + (CATA)n Simple_repeat Simple_repeat 2 96 0 5 1411 951 131 160 16 chr12 108339773 108339967 -12917563 - URR1B DNA MER1_type -3 222 1 5 1411 232 196 22 0 chr12 108340734 108340780 -12916750 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 5 1411 697 290 92 18 chr12 108340805 108341033 -12916497 - B4A SINE B4 -41 251 7 5 1411 519 31 0 0 chr12 108341371 108341436 -12916094 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1411 307 326 58 49 chr12 108341543 108341769 -12915761 - L1MEg LINE L1 -4015 2069 1842 5 1411 243 61 0 0 chr12 108342642 108342675 -12914855 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1411 21 0 0 0 chr12 108344444 108344465 -12913065 + AT_rich Low_complexity Low_complexity 1 21 0 5 1411 873 248 162 42 chr12 108344480 108344578 -12912952 - Lx8 LINE L1 -9 7464 7333 5 1411 486 0 0 0 chr12 108344578 108344632 -12912898 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1411 873 248 162 42 chr12 108344632 108344959 -12912571 - Lx8 LINE L1 -141 7332 6989 5 1411 1051 199 42 0 chr12 108345505 108345721 -12911809 - URR1A DNA MER1_type -1 225 1 5 1411 488 361 58 10 chr12 108345763 108345970 -12911560 + B4A SINE B4 68 284 -8 5 1411 182 282 10 0 chr12 108345988 108346091 -12911439 + (CA)n Simple_repeat Simple_repeat 1 104 0 5 1411 207 219 0 0 chr12 108346381 108346422 -12911108 + A-rich Low_complexity Low_complexity 1 41 0 5 1411 311 281 27 23 chr12 108346955 108347219 -12910311 + CT-rich Low_complexity Low_complexity 1 265 0 5 1411 294 331 67 72 chr12 108348231 108348303 -12909227 + ID_B1 SINE B4 17 210 -14 5 1411 511 227 65 32 chr12 108348303 108348426 -12909104 + B1F2 SINE Alu 9 135 -14 5 1411 209 203 79 63 chr12 108348533 108348596 -12908934 - MIR SINE MIR -62 146 83 5 1411 287 315 81 0 chr12 108349085 108349196 -12908334 - PB1D7 SINE Alu 0 120 1 5 1411 936 186 0 0 chr12 108349356 108349764 -12907766 + CT-rich Low_complexity Low_complexity 1 408 0 5 1411 891 183 0 0 chr12 108349776 108349956 -12907574 + CT-rich Low_complexity Low_complexity 1 180 0 5 1411 765 209 0 7 chr12 108349970 108350249 -12907281 + CT-rich Low_complexity Low_complexity 1 276 0 5 1411 347 127 0 45 chr12 108351289 108351355 -12906175 - HAL1-3A_ME LINE L1 -820 2038 1976 5 1411 1390 248 18 73 chr12 108352100 108352483 -12905047 - ORR1D2 LTR MaLR -8 362 1 5 1411 1011 193 37 19 chr12 108352594 108352810 -12904720 + URR1B DNA MER1_type 3 222 -3 5 1411 1013 298 80 6 chr12 108353142 108353469 -12904061 - MTEa LTR MaLR -11 368 18 5 1411 261 356 23 8 chr12 108353356 108353486 -12904044 - MT2A LTR ERVL -401 132 1 5 1411 268 221 251 21 chr12 108353550 108353737 -12903793 + Lx9 LINE L1 7411 7640 -4 5 1411 496 265 95 0 chr12 108353839 108353986 -12903544 + B4A SINE B4 114 274 -18 5 1411 387 0 0 0 chr12 108354027 108354070 -12903460 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1411 792 32 0 0 chr12 108354087 108354182 -12903348 + (GGGGA)n Simple_repeat Simple_repeat 4 98 0 5 1411 782 191 11 22 chr12 108355199 108355474 -12902056 + (TA)n Simple_repeat Simple_repeat 1 271 0 5 1411 643 296 204 17 chr12 108355474 108355733 -12901797 + MTEa LTR MaLR 68 374 -5 5 1411 966 69 0 0 chr12 108359499 108359643 -12897887 + (GA)n Simple_repeat Simple_repeat 1 144 0 5 1411 654 269 60 10 chr12 108359723 108359922 -12897608 - MER20 DNA MER1_type -2 217 9 5 1411 260 259 17 0 chr12 108360005 108360063 -12897467 + L2b LINE L2 3297 3355 -20 5 1411 500 111 12 0 chr12 108360870 108360951 -12896579 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 1411 894 217 151 34 chr12 108361055 108361217 -12896313 - B4 SINE B4 -24 268 76 5 1411 495 0 0 0 chr12 108361217 108361272 -12896258 + (TTA)n Simple_repeat Simple_repeat 3 57 0 5 1411 894 217 151 34 chr12 108361272 108361347 -12896183 - B4 SINE B4 -217 75 3 5 1411 216 111 0 53 chr12 108361748 108361805 -12895725 + T-rich Low_complexity Low_complexity 2 55 0 5 1411 251 327 185 15 chr12 108364131 108364401 -12893129 - L2a LINE L2 -122 3304 2989 5 1411 604 226 16 0 chr12 108364586 108364710 -12892820 + B1_Mur4 SINE Alu 2 127 -23 5 1411 180 77 0 0 chr12 108365276 108365302 -12892228 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1411 25 31 0 0 chr12 108365558 108365590 -12891940 + AT_rich Low_complexity Low_complexity 1 32 0 5 1411 287 217 147 32 chr12 108367829 108367924 -12889606 + MLT1A1 LTR MaLR 291 396 -12 5 1411 396 0 0 0 chr12 108368224 108368268 -12889262 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1411 233 322 8 17 chr12 108368276 108368396 -12889134 + (CATATA)n Simple_repeat Simple_repeat 1 119 0 5 1411 249 254 41 41 chr12 108368398 108368521 -12889009 + L1MA9 LINE L1 6150 6272 -40 5 1411 717 250 0 24 chr12 108368799 108368963 -12888567 + RSINE1 SINE B4 3 162 -3 5 1411 450 0 0 0 chr12 108368971 108369021 -12888509 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1411 342 0 0 0 chr12 108369247 108369285 -12888245 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1411 196 379 11 0 chr12 108370858 108370945 -12886585 - MIRc SINE MIR -129 139 52 6 1411 291 182 0 0 chr12 108373526 108373603 -12883927 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 1411 422 295 12 18 chr12 108373641 108373810 -12883720 + (TATATG)n Simple_repeat Simple_repeat 6 173 0 6 1411 692 218 6 0 chr12 108373821 108374000 -12883530 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1411 1056 141 0 0 chr12 108374388 108374565 -12882965 + (TTC)n Simple_repeat Simple_repeat 3 179 0 6 1411 487 386 55 12 chr12 108374785 108375039 -12882491 + B4A SINE B4 3 267 -25 6 1411 222 37 0 0 chr12 108375048 108375075 -12882455 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1411 252 0 0 0 chr12 108375075 108375102 -12882428 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 1411 691 279 50 18 chr12 108375914 108376133 -12881397 + MTE2a LTR MaLR 154 379 0 6 1411 186 43 0 0 chr12 108377292 108377315 -12880215 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1411 200 297 15 30 chr12 108380110 108380176 -12877354 - MIRm SINE MIR -3 273 209 6 1411 420 323 69 51 chr12 108381224 108381511 -12876019 + B4 SINE B4 1 276 -16 6 1411 371 269 29 23 chr12 108381549 108381724 -12875806 + (CATA)n Simple_repeat Simple_repeat 3 178 0 6 1411 203 173 24 24 chr12 108381748 108381831 -12875699 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 6 1411 183 317 93 37 chr12 108383416 108383524 -12874006 - L2 LINE L2 -561 2858 2745 6 1411 894 305 29 64 chr12 108384045 108384388 -12873142 + MER46C DNA MER2_type 4 334 -4 6 1411 349 272 145 111 chr12 108384465 108384672 -12872858 + ID_B1 SINE B4 2 215 -9 6 1411 314 252 38 47 chr12 108384847 108384999 -12872531 - MIRc SINE MIR -89 179 21 6 1411 675 240 62 48 chr12 108387547 108387757 -12869773 - URR1A DNA MER1_type -6 220 8 6 1411 264 354 0 0 chr12 108387839 108387938 -12869592 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 1411 261 83 0 0 chr12 108388330 108388366 -12869164 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 6 1411 312 325 34 17 chr12 108388543 108388662 -12868868 + MLT1A0 LTR MaLR 21 141 -224 6 1411 203 326 50 10 chr12 108388900 108388999 -12868531 + MIR SINE MIR 104 206 -56 6 1411 816 299 81 0 chr12 108389964 108390225 -12867305 + B4A SINE B4 4 285 -7 6 1411 277 186 16 33 chr12 108390577 108390638 -12866892 - MTE2b LTR MaLR -5 374 315 6 1411 348 83 0 0 chr12 108390638 108390686 -12866844 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 6 1411 887 280 46 67 chr12 108390686 108390969 -12866561 - MTE2b LTR MaLR -55 324 48 6 1411 228 67 0 0 chr12 108391884 108391914 -12865616 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1411 863 304 76 22 chr12 108391956 108392232 -12865298 - B4 SINE B4 -1 291 1 6 1411 21 36 0 0 chr12 108392616 108392644 -12864886 + AT_rich Low_complexity Low_complexity 1 28 0 6 1411 552 15 0 0 chr12 108393856 108393921 -12863609 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1411 335 303 27 18 chr12 108394281 108394392 -12863138 + B4A SINE B4 157 268 -24 6 1411 839 96 7 0 chr12 108394392 108394528 -12863002 + (CA)n Simple_repeat Simple_repeat 1 137 0 6 1411 444 293 11 32 chr12 108395306 108395493 -12862037 + L1MA6 LINE L1 5878 6060 -240 6 1411 865 216 94 0 chr12 108395544 108395725 -12861805 - B3 SINE B2 -1 215 18 6 1411 337 330 36 0 chr12 108395762 108395874 -12861656 + ID_B1 SINE B4 99 214 -10 6 1411 231 250 0 0 chr12 108395875 108395923 -12861607 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 6 1411 642 197 7 73 chr12 108396082 108396219 -12861311 + B1_Mur3 SINE Alu 1 128 -21 6 1411 697 170 9 14 chr12 108396220 108396435 -12861095 + GA-rich Low_complexity Low_complexity 1 213 0 6 1412 553 311 35 42 chr12 108396949 108397208 -12860322 + MER121 Unknown Unknown 62 318 -94 6 1412 364 304 193 5 chr12 108398961 108399153 -12858377 - MER2 DNA MER2_type 0 345 118 6 1412 273 327 52 29 chr12 108399366 108399539 -12857991 + MER53 DNA hAT 11 187 -6 6 1412 1017 218 19 19 chr12 108399991 108400206 -12857324 + B3 SINE B2 2 216 0 6 1412 561 34 44 22 chr12 108400397 108400488 -12857042 + (TCTCTG)n Simple_repeat Simple_repeat 2 94 0 6 1412 241 281 157 41 chr12 108401419 108401567 -12855963 + MIRb SINE MIR 47 208 -54 6 1412 566 193 178 13 chr12 108402471 108402623 -12854907 - B3 SINE B2 -38 178 2 6 1412 606 287 88 30 chr12 108403027 108403294 -12854236 + B4A SINE B4 4 290 -2 6 1412 273 267 13 0 chr12 108403309 108403384 -12854146 + GA-rich Low_complexity Low_complexity 1 76 0 6 1412 252 185 19 0 chr12 108403350 108403404 -12854126 + (CAGAGA)n Simple_repeat Simple_repeat 3 57 0 6 1412 477 0 0 0 chr12 108403557 108403610 -12853920 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1412 8212 30 0 0 chr12 108404706 108405962 -12851568 - L1Md_A LINE L1 0 6582 5327 6 1412 240 306 12 0 chr12 108406186 108406271 -12851259 - MLT1I LTR MaLR 0 411 326 6 1412 886 273 8 80 chr12 108406639 108406671 -12850859 - B4 SINE B4 0 292 270 6 1412 423 0 0 0 chr12 108406671 108406718 -12850812 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1412 886 273 8 80 chr12 108406718 108406948 -12850582 - B4 SINE B4 -23 269 49 6 1412 915 259 0 0 chr12 108409133 108409334 -12848196 + Lx8 LINE L1 7049 7249 -224 6 1412 238 222 31 156 chr12 108409510 108409606 -12847924 + B4 SINE B4 1 84 -208 6 1412 189 361 15 92 chr12 108409659 108409790 -12847740 - MIRm SINE MIR -120 156 36 6 1412 577 308 40 37 chr12 108410875 108411148 -12846382 - B4A SINE B4 -17 275 2 6 1412 2192 211 55 71 chr12 108411230 108411908 -12845622 - RMER1B Other Other -13 1053 197 6 1412 272 314 7 22 chr12 108412018 108412155 -12845375 + L1MA6 LINE L1 6166 6300 0 6 1412 22 0 0 0 chr12 108412155 108412177 -12845353 + AT_rich Low_complexity Low_complexity 1 22 0 6 1412 1342 238 91 15 chr12 108412881 108413222 -12844308 - ORR1D2 LTR MaLR -2 368 2 6 1412 760 314 101 25 chr12 108413981 108414428 -12843102 + Lx8 LINE L1 6988 7468 -5 6 1412 9684 111 5 36 chr12 108414427 108416706 -12840824 - Lx3_Mus LINE L1 0 7009 4799 6 1412 342 0 0 0 chr12 108416902 108416940 -12840590 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1412 674 255 76 0 chr12 108417337 108417494 -12840036 + B3A SINE B2 1 169 -29 6 1412 473 159 46 17 chr12 108417551 108417655 -12839875 + URR1B DNA MER1_type 96 225 0 6 1412 22 0 0 0 chr12 108417661 108417683 -12839847 + AT_rich Low_complexity Low_complexity 1 22 0 6 1412 414 0 0 0 chr12 108421341 108421387 -12836143 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1412 233 342 32 24 chr12 108421754 108421877 -12835653 - Lx8 LINE L1 -361 7112 6989 6 1412 279 0 0 0 chr12 108422831 108422862 -12834668 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1412 234 0 0 0 chr12 108422862 108422887 -12834643 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 1412 259 238 38 47 chr12 108424835 108424941 -12832589 + HAL1 LINE L1 984 1088 -1419 6 1412 266 192 82 0 chr12 108424938 108425011 -12832519 + L1MB2 LINE L1 6087 6165 -6 6 1412 749 199 20 14 chr12 108425112 108425260 -12832270 + B1F2 SINE Alu 1 149 0 6 1412 334 329 123 73 chr12 108425328 108425669 -12831861 + MTEa LTR MaLR 5 362 -17 6 1412 312 297 16 78 chr12 108425734 108425862 -12831668 + L1M5 LINE L1 5312 5431 -693 6 1412 631 289 128 35 chr12 108425880 108426106 -12831424 - ORR1E LTR MaLR -108 251 5 6 1412 230 280 0 0 chr12 108426374 108426424 -12831106 - MTEa LTR MaLR -42 337 288 6 1412 23 0 0 29 chr12 108429558 108429574 -12827956 + AT_rich Low_complexity Low_complexity 1 16 0 6 1412 2415 32 3 0 chr12 108429574 108429858 -12827672 + L1Md_A LINE L1 6297 6581 -1 6 1412 23 0 0 29 chr12 108429858 108429875 -12827655 + AT_rich Low_complexity Low_complexity 1 17 0 6 1412 498 57 0 0 chr12 108432812 108432882 -12824648 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1412 229 310 45 65 chr12 108433823 108433978 -12823552 + L2c LINE L2 2933 3084 -303 6 1412 182 205 22 43 chr12 108434056 108434102 -12823428 - L2 LINE L2 -2928 491 447 6 1412 640 273 327 22 chr12 108434545 108434820 -12822710 - MTE2b LTR MaLR -12 367 9 6 1412 540 0 0 0 chr12 108435196 108435256 -12822274 + (TTCTC)n Simple_repeat Simple_repeat 5 64 0 6 1412 310 306 160 57 chr12 108435300 108435563 -12821967 - MER113 DNA MER1_type -144 377 88 6 1412 426 85 0 0 chr12 108438705 108438764 -12818766 + (CTCA)n Simple_repeat Simple_repeat 4 62 0 6 1412 654 282 101 14 chr12 108438812 108439089 -12818441 + MLT1C LTR MaLR 3 303 -164 6 1412 351 0 0 0 chr12 108439317 108439356 -12818174 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1412 606 285 15 45 chr12 108439709 108439911 -12817619 + B3A SINE B2 1 196 -2 6 1412 260 306 103 64 chr12 108439977 108440211 -12817319 + L2 LINE L2 2512 2754 -665 6 1412 183 365 19 19 chr12 108440345 108440451 -12817079 + L2 LINE L2 2957 3062 -357 6 1412 228 272 17 104 chr12 108441173 108441193 -12816337 + MT2B LTR ERVL 147 156 -445 6 1412 633 191 17 0 chr12 108441193 108441308 -12816222 + PB1D10 SINE Alu 1 117 0 6 1412 296 298 194 24 chr12 108441201 108441366 -12816164 + B4A SINE B4 94 286 -6 6 1412 423 0 0 0 chr12 108441390 108441437 -12816093 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1412 549 284 15 97 chr12 108441449 108441644 -12815886 - B4 SINE B4 0 292 114 6 1412 207 0 0 0 chr12 108441675 108441698 -12815832 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 6 1412 598 254 123 19 chr12 108442886 108443076 -12814454 - MTD LTR MaLR -8 411 181 6 1412 827 268 5 28 chr12 108444346 108444561 -12812969 - MTD LTR MaLR -207 212 3 6 1412 311 250 25 33 chr12 108445608 108445728 -12811802 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 6 1412 1314 138 0 10 chr12 108445772 108446287 -12811243 + (TCTA)n Simple_repeat Simple_repeat 1 509 0 7 1412 303 140 0 0 chr12 108446492 108446542 -12810988 + (CTA)n Simple_repeat Simple_repeat 1 50 0 7 1412 504 0 0 0 chr12 108447299 108447355 -12810175 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1412 783 140 0 0 chr12 108447355 108447526 -12810004 + (GA)n Simple_repeat Simple_repeat 2 172 0 7 1412 443 259 101 101 chr12 108447594 108447783 -12809747 - B3A SINE B2 -5 193 1 7 1412 185 352 55 37 chr12 108448211 108448320 -12809210 - MIRb SINE MIR -76 192 82 7 1412 927 339 78 36 chr12 108448939 108449679 -12807851 + Lx8 LINE L1 6667 7437 -36 7 1412 707 315 24 57 chr12 108451312 108451608 -12805922 + MER2 DNA MER2_type 60 345 0 7 1412 222 202 25 31 chr12 108451873 108452036 -12805494 + (TG)n Simple_repeat Simple_repeat 2 163 0 7 1412 213 159 31 16 chr12 108452084 108452148 -12805382 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1412 381 22 0 0 chr12 108452248 108452294 -12805236 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1412 334 256 39 0 chr12 108453581 108453659 -12803871 + MER58C DNA MER1_type 135 215 0 7 1412 671 54 11 0 chr12 108454276 108454368 -12803162 + (TC)n Simple_repeat Simple_repeat 1 93 0 7 1412 192 208 104 0 chr12 108455778 108455826 -12801704 + L2c LINE L2 3106 3158 -229 7 1412 633 310 43 0 chr12 108456668 108456852 -12800678 + ID_B1 SINE B4 2 193 -31 7 1412 405 0 0 0 chr12 108457059 108457104 -12800426 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1412 1407 22 6 11 chr12 108457133 108457314 -12800216 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 7 1412 311 113 177 0 chr12 108457369 108457431 -12800099 - B3A SINE B2 -125 73 1 7 1412 866 308 59 50 chr12 108458572 108458807 -12798723 + L1MA4A LINE L1 5352 5595 -584 7 1412 221 0 35 0 chr12 108458807 108458836 -12798694 + (CAAAC)n Simple_repeat Simple_repeat 1 30 0 7 1412 866 304 54 45 chr12 108458836 108459147 -12798383 + L1MA4A LINE L1 5591 5865 -773 7 1412 216 97 0 0 chr12 108459155 108459186 -12798344 + (CCCCCA)n Simple_repeat Simple_repeat 1 31 0 7 1412 180 0 0 0 chr12 108459309 108459329 -12798201 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1412 672 24 0 0 chr12 108459475 108459557 -12797973 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 1412 416 240 250 38 chr12 108461922 108462106 -12795424 - ID_B1 SINE B4 0 224 2 7 1412 899 292 0 23 chr12 108462257 108462339 -12795191 - B3 SINE B2 -1 215 136 7 1412 246 32 0 0 chr12 108462339 108462370 -12795160 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1412 899 292 0 23 chr12 108462370 108462501 -12795029 - B3 SINE B2 -81 135 7 7 1412 209 167 0 0 chr12 108462655 108462691 -12794839 + MIR3 SINE MIR 119 154 -54 7 1412 207 254 36 0 chr12 108462965 108463020 -12794510 - MIRm SINE MIR -13 263 207 7 1412 235 257 42 28 chr12 108463585 108463657 -12793873 + MamRep1161 DNA TcMar 78 150 -807 7 1412 548 309 21 16 chr12 108464359 108464550 -12792980 - B3A SINE B2 -3 195 4 7 1412 780 74 0 0 chr12 108464955 108465063 -12792467 + (TC)n Simple_repeat Simple_repeat 1 108 0 7 1412 1634 247 32 24 chr12 108465209 108465620 -12791910 + MTD LTR MaLR 4 417 -2 7 1412 348 64 0 0 chr12 108467075 108467122 -12790408 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1412 231 337 0 57 chr12 108467362 108467450 -12790080 + MER20B DNA MER1_type 75 157 -626 7 1412 1405 176 0 0 chr12 108467472 108467694 -12789836 - URR1B DNA MER1_type -2 223 2 7 1412 808 254 144 16 chr12 108467708 108467964 -12789566 + B4 SINE B4 2 290 -2 7 1412 285 315 11 0 chr12 108467968 108468057 -12789473 + (CATA)n Simple_repeat Simple_repeat 1 90 0 7 1412 739 192 0 11 chr12 108469129 108469308 -12788222 + CT-rich Low_complexity Low_complexity 2 178 0 7 1412 186 222 7 65 chr12 108469345 108469499 -12788031 + CT-rich Low_complexity Low_complexity 3 147 0 7 1412 340 230 81 0 chr12 108469591 108469665 -12787865 - B1F SINE Alu -49 100 21 7 1412 263 241 0 0 chr12 108470251 108470309 -12787221 + B3A SINE B2 19 76 -122 7 1412 777 201 17 58 chr12 108470311 108470485 -12787045 + B3 SINE B2 48 214 -2 7 1412 21 0 0 0 chr12 108470526 108470547 -12786983 + AT_rich Low_complexity Low_complexity 1 21 0 7 1412 183 224 169 17 chr12 108470709 108470768 -12786762 + MIR3 SINE MIR 117 184 -24 7 1412 447 368 0 0 chr12 108471257 108471447 -12786083 + MER46C DNA MER2_type 16 205 -133 7 1412 585 335 100 76 chr12 108471487 108472027 -12785503 - MLT1F2 LTR MaLR 0 560 8 7 1412 585 119 0 0 chr12 108473448 108473549 -12783981 + (TC)n Simple_repeat Simple_repeat 1 101 0 7 1412 1254 304 29 16 chr12 108473901 108474275 -12783255 - MTEa LTR MaLR 0 379 1 7 1412 461 376 53 53 chr12 108474275 108474632 -12782898 + LTR16B LTR ERVL 5 361 -102 7 1412 232 300 0 0 chr12 108474663 108474733 -12782797 + L1M4b LINE L1 2004 2073 -5261 7 1412 214 304 0 0 chr12 108475311 108475367 -12782163 + ID SINE ID 21 76 -148 7 1412 250 211 39 13 chr12 108475592 108475669 -12781861 + L1M4b LINE L1 3244 3322 -3681 7 1412 321 229 45 67 chr12 108475673 108475762 -12781768 + L1ME4a LINE L1 2409 2495 -3651 7 1412 429 292 260 15 chr12 108475914 108476314 -12781216 + L1MC LINE L1 3260 3757 -2389 7 1412 396 0 0 0 chr12 108476366 108476410 -12781120 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1412 341 315 75 61 chr12 108476452 108476943 -12780587 + L1ME4a LINE L1 3832 4318 -1828 7 1412 278 244 0 75 chr12 108477969 108478062 -12779468 + L1ME4a LINE L1 5815 5900 -224 7 1412 501 47 0 0 chr12 108478811 108478875 -12778655 + (TTG)n Simple_repeat Simple_repeat 2 65 0 7 1412 650 279 69 42 chr12 108478878 108479140 -12778390 + Charlie1a DNA MER1_type 616 884 -571 7 1412 457 226 73 22 chr12 108480075 108480211 -12777319 + B1F SINE Alu 6 148 -1 7 1412 341 210 99 142 chr12 108480229 108480440 -12777090 + Charlie1a DNA MER1_type 1232 1433 -22 7 1412 187 114 0 43 chr12 108480733 108480779 -12776751 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 1412 361 333 168 32 chr12 108481194 108481510 -12776020 - L1MEf LINE L1 -4720 1480 1122 7 1412 185 0 0 39 chr12 108482125 108482151 -12775379 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1412 825 257 0 0 chr12 108483541 108483693 -12773837 - RSINE1 SINE B4 -10 155 4 7 1412 233 111 0 22 chr12 108483693 108483739 -12773791 - L1_Rod LINE L1 -631 5216 5172 7 1412 834 290 37 85 chr12 108483999 108484303 -12773227 + B4 SINE B4 27 292 0 7 1412 327 276 47 19 chr12 108485037 108485144 -12772386 + MTD LTR MaLR 1 110 -309 7 1412 873 261 95 32 chr12 108485176 108485492 -12772038 - RMER20A LTR ERVK -27 489 154 7 1412 643 179 16 47 chr12 108485677 108485806 -12771724 - RMER20A LTR ERVK -502 125 1 7 1412 1153 225 83 11 chr12 108485832 108486097 -12771433 + MTD LTR MaLR 136 419 0 7 1412 988 291 24 8 chr12 108486188 108486441 -12771089 + B4A SINE B4 32 288 -4 7 1412 380 221 0 9 chr12 108486463 108486577 -12770953 + (CA)n Simple_repeat Simple_repeat 2 114 0 7 1412 3339 241 110 8 chr12 108486984 108487114 -12770416 - RMER1A Other Other -6 1024 857 7 1412 197 33 33 0 chr12 108487114 108487144 -12770386 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1412 3339 241 110 8 chr12 108487144 108487851 -12769679 - RMER1A Other Other -174 856 102 7 1412 190 320 26 123 chr12 108489069 108489183 -12768347 + L3 LINE CR1 3082 3184 -1305 7 1412 335 360 48 15 chr12 108490866 108491072 -12766458 - MLT1A0 LTR MaLR 0 365 153 7 1412 333 211 28 22 chr12 108491168 108491347 -12766183 + (TATG)n Simple_repeat Simple_repeat 1 180 0 7 1412 498 218 18 6 chr12 108491385 108491551 -12765979 + (TATG)n Simple_repeat Simple_repeat 3 170 0 7 1412 258 180 0 0 chr12 108491553 108491603 -12765927 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1412 421 296 84 109 chr12 108491973 108492257 -12765273 - MLT1B LTR MaLR -98 292 16 7 1412 767 208 10 3 chr12 108492850 108493164 -12764366 + (CA)n Simple_repeat Simple_repeat 1 316 0 7 1412 597 28 0 0 chr12 108493211 108493282 -12764248 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1412 747 305 39 59 chr12 108493941 108494279 -12763251 - Lx8 LINE L1 -216 7257 6927 7 1412 319 367 47 43 chr12 108494320 108494449 -12763081 + L1MDa LINE L1 1667 1792 -4841 7 1412 387 0 0 0 chr12 108494449 108494492 -12763038 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 1412 319 367 47 43 chr12 108494492 108494618 -12762912 + L1MDa LINE L1 1793 1922 -4711 7 1412 318 276 83 124 chr12 108494635 108494780 -12762750 - ID_B1 SINE B4 -1 223 85 7 1412 376 360 85 0 chr12 108494780 108494969 -12762561 + L1MDa LINE L1 1886 2090 -4543 7 1412 1356 246 96 6 chr12 108495441 108495764 -12761766 - ORR1D2 LTR MaLR -2 368 17 7 1412 991 282 103 26 chr12 108497274 108497663 -12759867 - MTD LTR MaLR 0 419 1 7 1412 268 246 168 38 chr12 108497694 108497825 -12759705 - B1F SINE Alu 0 149 1 7 1412 234 0 0 0 chr12 108498813 108498839 -12758691 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1412 628 276 27 23 chr12 108498865 108499084 -12758446 - ID_B1 SINE B4 -4 220 1 7 1412 293 293 85 66 chr12 108499089 108499195 -12758335 - PB1D9 SINE Alu -7 113 3 7 1412 186 43 0 0 chr12 108499199 108499222 -12758308 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1412 216 86 0 0 chr12 108499260 108499295 -12758235 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 7 1412 218 231 19 0 chr12 108499308 108499360 -12758170 + GA-rich Low_complexity Low_complexity 3 55 0 7 1412 299 225 56 40 chr12 108500046 108500171 -12757359 + MLT1D LTR MaLR 203 329 -176 1 1412 523 262 80 27 chr12 108500545 108500733 -12756797 + B3A SINE B2 1 198 0 2 1412 301 257 0 0 chr12 108501846 108501916 -12755614 + G-rich Low_complexity Low_complexity 1 70 0 3 1412 252 245 41 28 chr12 108502220 108502297 -12755233 - PB1D10 SINE Alu -3 124 38 4 1412 1061 266 121 31 chr12 108502598 108502979 -12754551 - MTD LTR MaLR 0 419 5 5 1412 293 335 20 20 chr12 108503551 108503703 -12753827 + MER5A1 DNA MER1_type 1 152 -14 6 1412 252 333 45 45 chr12 108504002 108504159 -12753371 + MLT1A1 LTR MaLR 247 403 -5 7 1412 439 95 27 0 chr12 108504167 108504241 -12753289 + (GGA)n Simple_repeat Simple_repeat 2 77 0 8 1412 205 208 40 27 chr12 108504316 108504390 -12753140 + GA-rich Low_complexity Low_complexity 3 77 0 9 1412 190 222 44 0 chr12 108505129 108505174 -12752356 - L3 LINE CR1 -8 4481 4435 1 1412 321 190 88 12 chr12 108505243 108505323 -12752207 - PB1D7 SINE Alu -26 94 9 1 1412 220 152 15 15 chr12 108505635 108505702 -12751828 + A-rich Low_complexity Low_complexity 3 69 0 1 1412 294 98 0 0 chr12 108507481 108507532 -12749998 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1412 738 248 6 6 chr12 108507573 108507731 -12749799 - B4 SINE B4 -10 282 125 1 1412 797 77 46 23 chr12 108507744 108507917 -12749613 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 1 1412 404 304 35 35 chr12 108507920 108508063 -12749467 - B4 SINE B4 -148 144 2 1 1412 1236 54 0 0 chr12 108508182 108508329 -12749201 + B1_Mus2 SINE Alu 1 147 0 1 1412 235 246 60 30 chr12 108508460 108508527 -12749003 + MTE2b LTR MaLR 1 69 -310 1 1412 814 279 122 0 chr12 108508880 108509134 -12748396 + MTE2b LTR MaLR 93 377 -2 1 1412 4314 160 64 65 chr12 108509524 108510413 -12747117 - RMER19B LTR ERVK -12 890 3 1 1412 402 21 0 0 chr12 108510413 108510460 -12747070 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1412 502 370 16 11 chr12 108510460 108510643 -12746887 - B4A SINE B4 0 292 109 2 1412 725 211 28 0 chr12 108511386 108511528 -12746002 - B1_Mur2 SINE Alu -1 148 3 2 1412 281 89 22 0 chr12 108512681 108512726 -12744804 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 2 1412 213 65 0 0 chr12 108513287 108513318 -12744212 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1412 493 228 59 0 chr12 108513706 108513807 -12743723 + ID_B1 SINE B4 78 184 -40 2 1412 429 36 0 0 chr12 108514311 108514366 -12743164 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1412 480 261 29 65 chr12 108514377 108514516 -12743014 - RSINE1 SINE B4 -29 136 3 2 1412 224 255 0 0 chr12 108514547 108514598 -12742932 + A-rich Low_complexity Low_complexity 1 51 0 2 1412 896 251 23 14 chr12 108515540 108515754 -12741776 + MTEa LTR MaLR 3 218 -161 2 1412 358 272 12 0 chr12 108517222 108517303 -12740227 - MLT1A LTR MaLR -7 367 286 2 1412 414 0 0 0 chr12 108517956 108518002 -12739528 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 3 1412 233 29 0 29 chr12 108518363 108518398 -12739132 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1412 490 259 8 25 chr12 108518410 108518529 -12739001 - RSINE1 SINE B4 -47 118 2 3 1412 864 207 18 6 chr12 108518734 108518904 -12738626 + B3 SINE B2 3 174 -42 3 1412 435 100 0 0 chr12 108518951 108519021 -12738509 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1412 212 147 0 0 chr12 108519749 108519783 -12737747 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 3 1412 1051 263 60 43 chr12 108520577 108520921 -12736609 - MTE2a LTR MaLR -8 371 22 3 1412 1318 249 68 20 chr12 108520941 108521294 -12736236 - ORR1D2 LTR MaLR 0 370 1 3 1412 1599 223 85 8 chr12 108521369 108521758 -12735772 - MTD LTR MaLR 0 419 1 3 1412 275 315 39 90 chr12 108521901 108522079 -12735451 + MLT1L LTR MaLR 216 384 -226 3 1412 310 296 146 30 chr12 108522630 108522794 -12734736 + MLT1B LTR MaLR 67 249 -141 4 1412 244 312 125 21 chr12 108522988 108523132 -12734398 - MLT1B LTR MaLR -224 166 8 4 1412 254 345 26 43 chr12 108523493 108523608 -12733922 + PB1D7 SINE Alu 5 117 -3 4 1412 1190 190 5 9 chr12 108525227 108525440 -12732090 + URR1B DNA MER1_type 14 225 0 4 1412 1615 229 103 5 chr12 108526558 108526927 -12730603 + MTD LTR MaLR 1 405 -14 4 1413 351 0 0 0 chr12 108528797 108528836 -12728694 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1413 184 270 173 13 chr12 108529169 108529244 -12728286 + MIR SINE MIR 149 235 -27 4 1413 441 0 0 0 chr12 108530008 108530057 -12727473 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1413 939 256 71 5 chr12 108530070 108530294 -12727236 - B4 SINE B4 -43 249 11 4 1413 460 324 75 49 chr12 108530678 108530944 -12726586 - B4A SINE B4 -10 282 10 4 1413 1348 234 33 92 chr12 108531133 108531523 -12726007 + ORR1D1 LTR MaLR 1 367 -7 5 1413 452 275 34 47 chr12 108531750 108531899 -12725631 + B1F SINE Alu 1 147 -2 5 1413 255 303 0 136 chr12 108532024 108532127 -12725403 + RMER12 LTR ERVK 749 837 -485 5 1413 330 365 16 5 chr12 108532506 108532696 -12724834 - Lx8 LINE L1 -292 7181 6990 5 1413 296 281 34 0 chr12 108532767 108532856 -12724674 - MIRb SINE MIR -116 152 61 5 1413 388 94 0 0 chr12 108534486 108534539 -12722991 + HAL1-3A_ME LINE L1 1960 2012 -846 5 1413 501 151 0 0 chr12 108534542 108534628 -12722902 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1413 210 246 0 0 chr12 108534897 108534958 -12722572 + GA-rich Low_complexity Low_complexity 3 63 0 5 1413 207 0 0 0 chr12 108535420 108535443 -12722087 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1413 431 112 33 11 chr12 108535672 108535762 -12721768 + CT-rich Low_complexity Low_complexity 2 93 0 5 1413 638 188 18 6 chr12 108535778 108535949 -12721581 + CT-rich Low_complexity Low_complexity 2 174 0 5 1413 928 250 34 5 chr12 108536270 108536475 -12721055 + B4A SINE B4 27 237 -55 6 1413 441 84 0 0 chr12 108536561 108536632 -12720898 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 1413 369 0 0 0 chr12 108536632 108536673 -12720857 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1413 1596 213 8 20 chr12 108536684 108537038 -12720492 - RLTR15 LTR ERVK -9 350 1 6 1413 234 62 0 0 chr12 108537959 108537991 -12719539 + (CAGAC)n Simple_repeat Simple_repeat 3 34 0 6 1413 749 331 54 3 chr12 108538131 108538425 -12719105 + Helitron1Na_Mam RC Helitron 744 1052 -10 6 1413 526 254 100 48 chr12 108539169 108539400 -12718130 - L1MB2 LINE L1 -124 6047 5805 6 1413 2437 279 103 84 chr12 108539410 108540598 -12716932 + Lx9 LINE L1 6435 7644 0 6 1413 240 200 0 0 chr12 108540796 108540851 -12716679 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 1413 195 191 44 0 chr12 108541113 108541181 -12716349 + CT-rich Low_complexity Low_complexity 2 72 0 6 1413 405 292 46 46 chr12 108541684 108541835 -12715695 - MLT1C LTR MaLR -257 210 60 7 1413 1065 96 0 0 chr12 108542099 108542255 -12715275 + (TG)n Simple_repeat Simple_repeat 1 156 0 7 1413 261 0 0 0 chr12 108542752 108542781 -12714749 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 7 1413 674 311 124 1 chr12 108543384 108543675 -12713855 + MLT1A0 LTR MaLR 25 463 -4 7 1413 306 340 22 24 chr12 108543684 108543816 -12713714 + MLT1A0-int LTR MaLR 8 144 -1345 7 1413 693 196 20 7 chr12 108543904 108544053 -12713477 + Lx5 LINE L1 6883 7033 -17 7 1413 249 33 0 0 chr12 108544055 108544085 -12713445 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 7 1413 2550 244 100 51 chr12 108544152 108544883 -12712647 + Lx9 LINE L1 6730 7481 -163 7 1413 459 0 0 0 chr12 108544883 108544934 -12712596 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1413 2550 244 100 51 chr12 108544934 108545069 -12712461 + Lx9 LINE L1 7482 7638 -6 7 1413 237 268 145 43 chr12 108545459 108545576 -12711954 + MER74B LTR ERVL 413 541 -81 7 1413 426 231 13 156 chr12 108546864 108547018 -12710512 + B1F SINE Alu 11 142 -7 7 1413 740 264 25 15 chr12 108547337 108547533 -12709997 + Tigger5 DNA MER2_type 2164 2361 -45 8 1413 286 311 113 77 chr12 108547759 108547954 -12709576 - MLT1A1 LTR MaLR -204 204 3 8 1413 2903 238 87 10 chr12 108548087 108548331 -12709199 + Lx8 LINE L1 6561 6813 -660 8 1413 3549 23 2 0 chr12 108548331 108548726 -12708804 + MTA_Mm LTR MaLR 1 396 0 8 1413 2903 238 87 10 chr12 108548726 108549157 -12708373 + Lx8 LINE L1 6814 7288 -185 8 1413 564 53 0 0 chr12 108549206 108549282 -12708248 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1413 1288 228 18 48 chr12 108549644 108549999 -12707531 + MTD LTR MaLR 1 417 -2 8 1413 831 281 73 56 chr12 108550023 108550346 -12707184 - MTE2a LTR MaLR -7 372 63 8 1413 190 318 11 23 chr12 108551756 108551843 -12705687 + MIRc SINE MIR 79 164 -104 8 1413 608 200 100 0 chr12 108551924 108552054 -12705476 - B1_Mur1 SINE Alu -6 143 1 8 1413 674 251 58 58 chr12 108552140 108552624 -12704906 + L1MB1 LINE L1 5115 5604 -687 8 1413 417 222 119 123 chr12 108552627 108552920 -12704610 + B4 SINE B4 1 292 0 9 1413 627 192 0 0 chr12 108552920 108553097 -12704433 + (CA)n Simple_repeat Simple_repeat 1 177 0 9 1413 671 269 141 0 chr12 108553126 108553375 -12704155 + L1MB1 LINE L1 5593 5876 -313 8 1413 608 87 11 0 chr12 108553678 108553770 -12703760 + (CA)n Simple_repeat Simple_repeat 1 93 0 9 1413 288 221 0 0 chr12 108554798 108554875 -12702655 + (TG)n Simple_repeat Simple_repeat 2 78 0 9 1413 212 167 48 0 chr12 108554901 108554943 -12702587 + (TATG)n Simple_repeat Simple_repeat 4 47 0 9 1413 516 81 0 0 chr12 108555841 108555915 -12701615 + (TG)n Simple_repeat Simple_repeat 2 75 0 9 1413 9057 138 1 2 chr12 108556413 108557839 -12699691 - L1_Mur2 LINE L1 -695 5182 3758 9 1413 4912 79 44 31 chr12 108557839 108558559 -12698971 + L1_Mus4 LINE L1 5899 6628 -8 9 1413 189 269 0 0 chr12 108558734 108558801 -12698729 + (TATG)n Simple_repeat Simple_repeat 4 70 0 9 1413 508 319 53 16 chr12 108559754 108559942 -12697588 - MTD LTR MaLR -224 195 1 9 1413 359 356 52 97 chr12 108559959 108560248 -12697282 - Tigger5 DNA MER2_type -2129 277 2 1 1413 320 260 176 37 chr12 108560561 108560777 -12696753 + L1MC4 LINE L1 7433 7678 -364 1 1413 228 67 0 0 chr12 108562186 108562216 -12695314 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1413 308 81 0 0 chr12 108562525 108562562 -12694968 + L1Md_F3 LINE L1 5549 5585 -298 1 1413 8551 25 1 6 chr12 108562563 108563552 -12693978 + L1Md_F3 LINE L1 5587 6570 -14 1 1413 1161 54 0 26 chr12 108563560 108563696 -12693834 + B1_Mus1 SINE Alu 1 135 -13 1 1413 225 0 0 0 chr12 108563696 108563721 -12693809 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1413 1161 54 0 26 chr12 108563721 108563736 -12693794 + B1_Mus1 SINE Alu 136 148 0 1 1413 606 63 0 0 chr12 108563736 108563815 -12693715 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1413 721 239 161 62 chr12 108564264 108564586 -12692944 - ORR1E LTR MaLR 0 359 6 1 1413 286 329 56 50 chr12 108565871 108566144 -12691386 - L2a LINE L2 0 3426 3102 1 1413 428 235 7 0 chr12 108566371 108566507 -12691023 + (TG)n Simple_repeat Simple_repeat 1 137 0 1 1413 508 313 104 58 chr12 108566549 108566827 -12690703 - B4A SINE B4 0 292 2 1 1413 405 0 0 0 chr12 108567609 108567654 -12689876 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1413 234 0 0 0 chr12 108567654 108567679 -12689851 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1413 747 108 0 0 chr12 108568498 108568609 -12688921 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 1 1413 245 182 18 0 chr12 108568609 108568664 -12688866 + GA-rich Low_complexity Low_complexity 2 57 0 1 1413 432 304 117 62 chr12 108568709 108568983 -12688547 + B4A SINE B4 3 291 -1 1 1413 501 115 0 0 chr12 108569289 108569367 -12688163 + (TTTC)n Simple_repeat Simple_repeat 1 78 0 1 1413 1031 46 0 8 chr12 108569367 108569499 -12688031 - B1_Mus2 SINE Alu -1 146 16 1 1413 756 279 65 53 chr12 108570124 108570537 -12686993 - Lx9 LINE L1 -54 7590 7173 1 1413 602 239 55 111 chr12 108570980 108571215 -12686315 - MTE2a LTR MaLR 0 379 158 1 1413 309 388 14 67 chr12 108571247 108571457 -12686073 + MLT1J2 LTR MaLR 45 243 -205 1 1413 3227 16 8 8 chr12 108571566 108571931 -12685599 - RLTR10B2 LTR ERVK 0 365 1 1 1413 999 273 31 15 chr12 108573835 108574094 -12683436 - MTEa LTR MaLR -3 376 114 1 1413 483 151 47 0 chr12 108574094 108574180 -12683350 + ORR1B1 LTR MaLR 1 90 -304 1 1413 1889 190 2 45 chr12 108574180 108574577 -12682953 + ORR1B1 LTR MaLR 8 387 -7 1 1413 364 311 7 43 chr12 108574544 108574685 -12682845 - MTEa LTR MaLR -240 139 4 1 1413 845 190 6 0 chr12 108575145 108575324 -12682206 + CT-rich Low_complexity Low_complexity 1 180 0 1 1413 600 245 20 26 chr12 108575443 108575594 -12681936 - RSINE1 SINE B4 -13 152 3 1 1413 298 308 69 89 chr12 108576045 108576248 -12681282 + MLT1D LTR MaLR 268 466 -39 1 1413 528 312 56 66 chr12 108576920 108577239 -12680291 - MamRep434 DNA TcMar -4 422 107 1 1413 1015 91 21 0 chr12 108577529 108577672 -12679858 + B1_Mm SINE Alu 2 147 0 1 1413 491 221 241 18 chr12 108578304 108578474 -12679056 + B3 SINE B2 1 208 -8 1 1413 753 252 92 96 chr12 108578573 108578854 -12678676 - B4 SINE B4 -10 282 3 1 1413 416 186 58 19 chr12 108579183 108579287 -12678243 - B3 SINE B2 0 216 109 1 1413 692 260 28 22 chr12 108579379 108579560 -12677970 - B3A SINE B2 -16 182 1 1 1413 326 333 38 0 chr12 108579831 108579963 -12677567 - MER21B LTR ERV1 -427 436 300 1 1413 357 109 0 0 chr12 108580255 108580310 -12677220 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1413 426 286 67 10 chr12 108580729 108580923 -12676607 - Lx8 LINE L1 -2 7471 7267 1 1413 1028 218 70 42 chr12 108580994 108581058 -12676472 - MTD LTR MaLR -2 417 357 1 1413 2157 49 4 0 chr12 108581058 108581322 -12676208 - L1Md_F2 LINE L1 -8 6574 6310 1 1413 1028 218 70 42 chr12 108581322 108581516 -12676014 - MTD LTR MaLR -63 356 152 1 1413 279 79 0 0 chr12 108581670 108581708 -12675822 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1413 597 94 0 0 chr12 108581752 108581837 -12675693 + (GGAA)n Simple_repeat Simple_repeat 1 85 0 1 1413 760 327 73 24 chr12 108583442 108583899 -12673631 - MT2A LTR ERVL -47 554 1 1 1413 369 0 0 0 chr12 108584014 108584055 -12673475 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1413 633 252 7 7 chr12 108585881 108586025 -12671505 + B1_Mur1 SINE Alu 1 144 -5 1 1413 190 193 0 34 chr12 108586025 108586084 -12671446 + GA-rich Low_complexity Low_complexity 4 60 0 1 1413 315 0 0 0 chr12 108586630 108586665 -12670865 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1413 368 342 108 6 chr12 108588862 108589258 -12668272 - L1MC LINE L1 -430 5734 5303 1 1413 1200 41 14 0 chr12 108589260 108589405 -12668125 + B1_Mm SINE Alu 1 147 0 1 1413 811 256 14 42 chr12 108589433 108589649 -12667881 - B3 SINE B2 -6 210 1 1 1413 234 105 0 0 chr12 108589657 108589695 -12667835 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1413 592 307 199 29 chr12 108590208 108590866 -12666664 + L1MC3 LINE L1 6859 7629 -156 1 1413 290 341 148 34 chr12 108591252 108591461 -12666069 - MLT1G3 LTR MaLR -175 420 188 1 1413 1070 310 57 16 chr12 108591780 108592150 -12665380 + MLT1A1 LTR MaLR 22 406 -2 1 1413 2600 65 0 20 chr12 108592178 108592526 -12665004 + L1Md_F2 LINE L1 6228 6568 -14 1 1413 333 161 0 0 chr12 108592609 108592696 -12664834 + (TCTG)n Simple_repeat Simple_repeat 2 88 0 1 1413 180 0 0 0 chr12 108592701 108592721 -12664809 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1413 658 311 65 22 chr12 108593243 108593473 -12664057 - MLT1A0 LTR MaLR -49 316 77 1 1413 916 246 114 24 chr12 108596620 108596866 -12660664 - MTEa LTR MaLR -5 374 107 1 1413 3095 295 118 54 chr12 108596992 108598266 -12659264 - MTE-int LTR MaLR 0 1580 226 1 1413 226 217 174 0 chr12 108598455 108598501 -12659029 - Cheshire DNA MER1_type -2151 269 216 1 1413 284 280 224 0 chr12 108599418 108599525 -12658005 + MIR SINE MIR 25 155 -121 1 1413 462 291 126 39 chr12 108599528 108599886 -12657644 + MLT1B LTR MaLR 1 389 -1 1 1413 351 0 0 0 chr12 108600175 108600214 -12657316 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1413 250 195 24 94 chr12 108600451 108600536 -12656994 + MER34A1 LTR ERV1 431 509 -78 1 1413 327 275 76 11 chr12 108601262 108601354 -12656176 - B3 SINE B2 -6 210 113 1 1413 334 243 13 13 chr12 108602081 108602156 -12655374 - HAL1-3A_ME LINE L1 -809 2049 1975 1 1413 471 234 0 0 chr12 108602156 108602327 -12655203 + (TG)n Simple_repeat Simple_repeat 2 172 0 1 1413 523 322 9 81 chr12 108602328 108602372 -12655158 - B4 SINE B4 0 292 261 1 1413 423 0 0 0 chr12 108602372 108602419 -12655111 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1413 369 0 0 0 chr12 108602419 108602459 -12655071 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1413 523 322 9 81 chr12 108602459 108602636 -12654894 - B4 SINE B4 -32 260 87 1 1413 474 108 0 0 chr12 108602636 108602710 -12654820 + (CCCTAA)n Simple_repeat Simple_repeat 5 78 0 1 1413 302 221 29 14 chr12 108602724 108602793 -12654737 - B4 SINE B4 -221 71 2 1 1413 193 146 63 127 chr12 108602835 108602898 -12654632 + L3 LINE CR1 2107 2165 -2324 1 1413 378 0 0 0 chr12 108603095 108603137 -12654393 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1413 21 0 0 0 chr12 108604134 108604155 -12653375 + AT_rich Low_complexity Low_complexity 1 21 0 1 1413 848 141 0 22 chr12 108604391 108604481 -12653049 + polypurine Low_complexity Low_complexity 1 88 0 1 1413 1181 68 0 6 chr12 108604481 108604659 -12652871 + (GAA)n Simple_repeat Simple_repeat 1 177 0 1 1413 848 141 0 22 chr12 108604659 108604750 -12652780 + polypurine Low_complexity Low_complexity 89 178 0 1 1413 1281 265 78 39 chr12 108605338 108605802 -12651728 + Lx8 LINE L1 6990 7471 -2 1 1413 10826 59 1 1 chr12 108605815 108607171 -12650359 + L1Md_F2 LINE L1 4231 5586 -297 1 1413 8163 44 10 2 chr12 108607171 108608158 -12649372 + L1Md_F2 LINE L1 5587 6581 -1 1 1413 236 294 0 0 chr12 108608823 108608874 -12648656 + G-rich Low_complexity Low_complexity 5 55 0 1 1413 762 165 6 28 chr12 108608875 108609056 -12648474 + GA-rich Low_complexity Low_complexity 2 178 0 1 1413 203 328 0 0 chr12 108609058 108609119 -12648411 + G-rich Low_complexity Low_complexity 3 63 0 1 1413 391 205 16 16 chr12 108609129 108609258 -12648272 + GA-rich Low_complexity Low_complexity 4 132 0 1 1413 180 328 16 79 chr12 108611283 108611409 -12646121 - MIR SINE MIR -117 145 28 1 1413 349 327 68 43 chr12 108611907 108612070 -12645460 + B4A SINE B4 104 270 -22 1 1413 423 0 0 0 chr12 108612090 108612137 -12645393 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1413 223 377 17 17 chr12 108612671 108612787 -12644743 + MIRb SINE MIR 20 135 -133 1 1413 369 0 0 0 chr12 108612903 108612944 -12644586 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 1 1413 239 164 0 35 chr12 108613437 108613494 -12644036 + CT-rich Low_complexity Low_complexity 1 55 0 1 1413 446 287 73 28 chr12 108613975 108614154 -12643376 - ALINE LINE RTE -424 193 7 1 1413 327 244 91 84 chr12 108614941 108615084 -12642446 + RMER15 LTR ERVL 18 161 -414 1 1413 597 314 89 20 chr12 108615081 108615328 -12642202 + RMER15 LTR ERVL 276 539 -36 1 1413 873 0 0 0 chr12 108615712 108615809 -12641721 + (TTCTC)n Simple_repeat Simple_repeat 3 99 0 1 1413 784 61 9 17 chr12 108615850 108615966 -12641564 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 1 1413 201 74 0 0 chr12 108615967 108615994 -12641536 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 1 1413 754 284 33 29 chr12 108615995 108616205 -12641325 - ID_B1 SINE B4 -13 211 1 1 1413 264 294 48 62 chr12 108617176 108617321 -12640209 - MER89 LTR ERV1 -2 557 415 1 1413 253 221 59 0 chr12 108617354 108617422 -12640108 - MER89 LTR ERV1 -215 344 273 1 1413 316 298 117 0 chr12 108618708 108618802 -12638728 + PB1D10 SINE Alu 12 116 -1 1 1413 311 322 122 64 chr12 108618912 108619240 -12638290 + ORR1E LTR MaLR 1 347 -12 1 1413 342 0 0 0 chr12 108619853 108619891 -12637639 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1413 360 0 0 0 chr12 108619891 108619930 -12637600 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1413 992 282 36 16 chr12 108620008 108620260 -12637270 - B4 SINE B4 -23 269 13 2 1413 218 351 66 78 chr12 108620591 108620758 -12636772 - MIR SINE MIR -86 182 18 2 1413 208 281 0 0 chr12 108621426 108621483 -12636047 + GA-rich Low_complexity Low_complexity 3 59 0 2 1413 360 0 0 0 chr12 108621782 108621822 -12635708 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1413 185 184 105 0 chr12 108622582 108622620 -12634910 - L2b LINE L2 -1 3374 3333 2 1413 648 115 0 0 chr12 108622680 108622802 -12634728 + (TC)n Simple_repeat Simple_repeat 1 122 0 2 1413 1926 0 0 0 chr12 108622920 108623133 -12634397 - L1Md_A LINE L1 0 6582 6370 2 1413 1253 34 0 7 chr12 108624080 108624228 -12633302 - B1_Mm SINE Alu 0 147 1 2 1413 338 306 144 21 chr12 108624646 108624833 -12632697 - HAL1-3A_ME LINE L1 -674 2184 1975 2 1413 349 338 52 26 chr12 108625299 108625583 -12631947 - L1MD LINE L1 -2092 4054 3761 2 1413 455 134 12 0 chr12 108626250 108626332 -12631198 + (GGA)n Simple_repeat Simple_repeat 2 84 0 2 1413 1125 247 97 30 chr12 108626424 108626817 -12630713 + MTD LTR MaLR 1 419 0 2 1413 257 225 35 43 chr12 108627188 108627261 -12630269 + MIRc SINE MIR 95 167 -41 2 1413 405 0 0 0 chr12 108628717 108628762 -12628768 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1413 399 291 157 40 chr12 108628789 108629012 -12628518 - B4 SINE B4 -43 249 1 2 1413 685 337 42 26 chr12 108630665 108630976 -12626554 - MER121 Unknown Unknown -80 332 17 2 1413 396 40 0 0 chr12 108631025 108631075 -12626455 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1413 423 0 0 0 chr12 108631075 108631122 -12626408 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1413 1015 156 28 17 chr12 108631662 108631838 -12625692 + URR1A DNA MER1_type 47 224 -2 2 1413 378 0 0 0 chr12 108631886 108631928 -12625602 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1413 392 238 0 110 chr12 108633630 108633748 -12623782 + PB1D9 SINE Alu 15 119 -1 2 1413 617 110 0 10 chr12 108633748 108633849 -12623681 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 2 1413 687 283 81 11 chr12 108633990 108634176 -12623354 + B4 SINE B4 43 241 -51 2 1413 280 368 77 0 chr12 108634286 108634441 -12623089 + MER3 DNA MER1_type 4 170 -39 2 1413 651 234 94 16 chr12 108634783 108634974 -12622556 - B3 SINE B2 -8 208 3 2 1413 222 37 0 0 chr12 108635096 108635123 -12622407 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2 1413 611 260 59 13 chr12 108636878 108637030 -12620500 + MTE2b LTR MaLR 1 159 -220 2 1413 522 249 150 29 chr12 108637153 108637360 -12620170 + MTE2b LTR MaLR 147 378 -1 2 1413 243 262 70 70 chr12 108638502 108638588 -12618942 + MIRb SINE MIR 43 128 -140 2 1413 872 315 85 24 chr12 108638751 108639138 -12618392 - MTD LTR MaLR -14 405 2 2 1413 294 305 182 39 chr12 108639240 108639421 -12618109 - MIR SINE MIR -47 215 9 2 1413 1947 210 49 42 chr12 108640819 108641227 -12616303 - MTD LTR MaLR -8 411 1 2 1413 383 246 41 25 chr12 108642210 108642331 -12615199 + MLT1A0 LTR MaLR 6 128 -237 2 1413 230 383 52 0 chr12 108642441 108642556 -12614974 - MIRb SINE MIR -117 151 31 2 1413 356 309 77 24 chr12 108643205 108643374 -12614156 + MIRc SINE MIR 89 266 -2 2 1413 198 103 0 0 chr12 108644122 108644151 -12613379 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1413 699 146 0 0 chr12 108644291 108644421 -12613109 + (CA)n Simple_repeat Simple_repeat 2 131 0 2 1413 266 288 92 46 chr12 108644462 108644593 -12612937 + L1MEc LINE L1 270 406 -5994 2 1413 336 266 56 28 chr12 108645062 108645205 -12612325 + L1MEc LINE L1 1030 1176 -5224 2 1413 528 299 0 0 chr12 108645513 108645650 -12611880 - MTEa LTR MaLR -226 153 17 2 1413 477 301 12 35 chr12 108646215 108646384 -12611146 - RSINE1 SINE B4 0 165 1 2 1413 327 300 8 91 chr12 108647104 108647236 -12610294 + MER20 DNA MER1_type 24 144 -75 2 1413 1111 235 37 4 chr12 108647268 108647512 -12610018 + MTEb LTR MaLR 124 375 -4 2 1413 304 227 130 68 chr12 108647987 108648115 -12609415 + MTEa LTR MaLR 241 364 -15 2 1413 419 180 9 26 chr12 108649301 108649415 -12608115 + GA-rich Low_complexity Low_complexity 3 114 0 2 1413 513 0 0 0 chr12 108649431 108649488 -12608042 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1413 252 0 0 0 chr12 108649970 108649998 -12607532 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1413 5063 174 72 20 chr12 108650096 108651080 -12606450 + Lx5 LINE L1 5964 6998 -52 2 1413 456 196 0 0 chr12 108651334 108651433 -12606097 + (CA)n Simple_repeat Simple_repeat 2 100 0 2 1413 261 0 0 0 chr12 108651433 108651462 -12606068 + (CG)n Simple_repeat Simple_repeat 2 30 0 2 1413 456 196 0 0 chr12 108651462 108651474 -12606056 + (CA)n Simple_repeat Simple_repeat 1 12 0 2 1413 1197 187 4 22 chr12 108651651 108651881 -12605649 + URR1A DNA MER1_type 1 226 0 2 1413 393 314 60 87 chr12 108652092 108652277 -12605253 + B4A SINE B4 64 243 -49 2 1413 313 240 24 47 chr12 108652284 108652411 -12605119 + (CATA)n Simple_repeat Simple_repeat 4 127 0 2 1413 3205 70 5 0 chr12 108652477 108652875 -12604655 - MTB LTR MaLR 0 400 1 2 1413 1564 214 79 18 chr12 108652932 108653275 -12604255 + MTD LTR MaLR 1 364 -55 2 1413 191 238 72 134 chr12 108653362 108653459 -12604071 - L2c LINE L2 -9 3378 3288 2 1413 220 196 0 0 chr12 108653586 108653637 -12603893 + C-rich Low_complexity Low_complexity 1 51 0 2 1413 239 157 20 0 chr12 108656267 108656318 -12601212 + GA-rich Low_complexity Low_complexity 2 53 0 2 1414 552 200 0 0 chr12 108658863 108659008 -12598522 + (CA)n Simple_repeat Simple_repeat 2 146 0 2 1414 396 183 61 0 chr12 108659055 108659137 -12598393 + HAL1-3A_ME LINE L1 1976 2062 -796 2 1414 21 0 0 0 chr12 108659238 108659259 -12598271 + AT_rich Low_complexity Low_complexity 1 21 0 2 1414 259 294 105 115 chr12 108660973 108661173 -12596357 - B4 SINE B4 -11 281 84 2 1414 684 207 32 26 chr12 108661179 108661333 -12596197 - MTD LTR MaLR 0 419 265 2 1414 546 236 135 0 chr12 108661377 108661525 -12596005 - MTD LTR MaLR -231 188 21 2 1414 655 246 14 14 chr12 108662698 108662846 -12594684 - MLT1J1 LTR MaLR -276 168 21 2 1414 254 282 16 63 chr12 108663051 108663285 -12594245 + C-rich Low_complexity Low_complexity 1 223 0 2 1414 195 269 101 46 chr12 108663569 108663678 -12593852 + L2 LINE L2 500 614 -2805 2 1414 268 336 19 9 chr12 108663721 108663829 -12593701 + PB1D7 SINE Alu 10 118 -2 2 1414 1721 239 40 5 chr12 108664084 108664484 -12593046 + MTD LTR MaLR 6 419 0 2 1414 419 194 0 72 chr12 108665733 108665927 -12591603 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1414 673 311 16 20 chr12 108665939 108666188 -12591342 + Charlie1a DNA MER1_type 602 849 -606 2 1414 443 236 17 43 chr12 108666200 108666315 -12591215 + B1_Mur1 SINE Alu 24 135 -14 2 1414 429 20 0 0 chr12 108666316 108666366 -12591164 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1414 799 342 42 38 chr12 108666380 108666876 -12590654 - L1MB1 LINE L1 -16 6152 5655 2 1414 230 272 43 113 chr12 108666908 108667049 -12590481 - MLT1I LTR MaLR -262 149 19 2 1414 1847 251 32 7 chr12 108667177 108667191 -12590339 + MTD LTR MaLR 1 12 -407 2 1414 186 43 0 0 chr12 108667191 108667214 -12590316 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1414 1847 251 32 7 chr12 108667214 108667608 -12589922 + MTD LTR MaLR 13 419 0 2 1414 198 0 0 0 chr12 108668884 108668906 -12588624 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1414 852 82 0 0 chr12 108668906 108669040 -12588490 + (GA)n Simple_repeat Simple_repeat 1 135 0 2 1414 813 280 9 18 chr12 108669389 108669607 -12587923 + B3 SINE B2 1 216 0 2 1414 257 295 138 8 chr12 108669872 108669995 -12587535 + MTEa LTR MaLR 239 377 -2 2 1414 747 229 7 0 chr12 108672219 108672359 -12585171 + ID_B1 SINE B4 84 224 0 2 1414 626 227 117 28 chr12 108672593 108672738 -12584792 - RSINE1 SINE B4 -2 163 6 2 1414 24 0 0 0 chr12 108673066 108673090 -12584440 + AT_rich Low_complexity Low_complexity 1 24 0 2 1414 322 290 96 51 chr12 108673207 108673385 -12584145 + Kanga2_a DNA Tc2 703 888 0 2 1414 186 286 0 0 chr12 108673535 108673633 -12583897 + (TG)n Simple_repeat Simple_repeat 1 98 0 2 1414 651 256 34 11 chr12 108673665 108673843 -12583687 - B3A SINE B2 -16 182 1 2 1414 285 270 107 44 chr12 108673844 108674022 -12583508 - MLT2D LTR ERVL -313 202 1 2 1414 335 303 87 58 chr12 108674169 108674514 -12583016 - MLT2D LTR ERVL -2 412 22 2 1414 831 335 52 12 chr12 108674923 108675267 -12582263 + MLT1A0 LTR MaLR 8 365 0 2 1414 581 298 168 50 chr12 108676001 108676322 -12581208 + ORR1E LTR MaLR 1 359 0 2 1414 807 258 114 11 chr12 108677044 108677307 -12580223 + B4A SINE B4 1 290 -2 2 1414 25 0 0 0 chr12 108677547 108677572 -12579958 + AT_rich Low_complexity Low_complexity 1 25 0 2 1414 3545 25 2 0 chr12 108677657 108678052 -12579478 + MTA_Mm LTR MaLR 1 396 0 2 1414 1638 255 77 14 chr12 108678142 108678647 -12578883 - Lx7 LINE L1 -350 7346 6810 2 1414 1122 273 19 127 chr12 108678706 108679125 -12578405 + MTE2a LTR MaLR 1 374 -5 2 1414 369 312 11 54 chr12 108679650 108679836 -12577694 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1414 215 385 0 0 chr12 108679863 108679972 -12577558 + (TG)n Simple_repeat Simple_repeat 1 109 0 2 1414 25 51 0 0 chr12 108680790 108680829 -12576701 + AT_rich Low_complexity Low_complexity 1 39 0 2 1414 28 71 0 0 chr12 108680902 108680958 -12576572 + AT_rich Low_complexity Low_complexity 1 56 0 2 1414 694 158 22 0 chr12 108681472 108681611 -12575919 + (TATATG)n Simple_repeat Simple_repeat 6 147 0 2 1414 320 207 24 24 chr12 108681613 108681697 -12575833 + (TATG)n Simple_repeat Simple_repeat 3 86 0 2 1414 558 250 92 7 chr12 108681903 108682044 -12575486 + B3 SINE B2 2 154 -62 3 1414 242 280 24 56 chr12 108682113 108682238 -12575292 + L1MD3 LINE L1 7873 7993 -2 3 1414 777 320 4 85 chr12 108682264 108682534 -12574996 + B4A SINE B4 45 292 0 3 1414 546 16 0 0 chr12 108684286 108684349 -12573181 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 3 1414 259 345 0 0 chr12 108684375 108684459 -12573071 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 3 1414 23 0 0 0 chr12 108684675 108684698 -12572832 + AT_rich Low_complexity Low_complexity 1 23 0 3 1414 244 283 159 48 chr12 108685367 108685512 -12572018 - Cheshire DNA MER1_type -2129 291 131 3 1414 594 0 0 0 chr12 108685545 108685611 -12571919 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 3 1414 223 188 10 59 chr12 108685615 108685717 -12571813 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 1414 303 206 69 55 chr12 108685966 108686079 -12571451 - ORR1E LTR MaLR -279 129 4 3 1414 403 197 44 0 chr12 108686354 108686491 -12571039 + GA-rich Low_complexity Low_complexity 1 143 0 3 1414 1083 102 0 0 chr12 108687255 108687402 -12570128 + B1_Mus1 SINE Alu 2 148 0 3 1414 1267 67 6 6 chr12 108687406 108687586 -12569944 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1414 952 275 23 0 chr12 108687616 108687834 -12569696 + B4 SINE B4 2 224 -68 3 1414 2479 136 10 93 chr12 108688468 108688962 -12568568 + RLTR11B LTR ERVK 1 453 0 3 1414 230 246 127 28 chr12 108688999 108689070 -12568460 - RMER15 LTR ERVL -3 572 495 3 1414 405 164 0 0 chr12 108689072 108689145 -12568385 + GA-rich Low_complexity Low_complexity 3 75 0 3 1414 2888 87 5 10 chr12 108690337 108690732 -12566798 + L1_Mus1 LINE L1 6175 6567 0 3 1414 548 121 11 0 chr12 108691303 108691394 -12566136 + (AGGGGG)n Simple_repeat Simple_repeat 4 95 0 3 1414 371 266 88 66 chr12 108692303 108692577 -12564953 - L1M5 LINE L1 -632 5547 5268 3 1414 258 88 51 34 chr12 108692606 108692665 -12564865 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 3 1414 690 321 36 9 chr12 108692901 108693124 -12564406 - B4A SINE B4 -51 241 13 3 1414 1319 269 84 44 chr12 108693675 108694150 -12563380 - Lx8 LINE L1 -35 7438 6945 3 1414 296 271 58 25 chr12 108694233 108694354 -12563176 - L1MC3 LINE L1 -109 7676 7552 3 1414 585 0 0 79 chr12 108694354 108694468 -12563062 + (TTCTC)n Simple_repeat Simple_repeat 3 107 0 3 1414 249 33 0 0 chr12 108694468 108694498 -12563032 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 3 1414 188 344 16 16 chr12 108695038 108695100 -12562430 + L2b LINE L2 3221 3282 -93 3 1414 582 283 33 109 chr12 108697140 108697318 -12560212 + B3A SINE B2 1 165 -33 3 1414 459 0 0 0 chr12 108697318 108697369 -12560161 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1414 373 283 33 109 chr12 108697369 108697400 -12560130 + B2_Mm2 SINE B2 163 194 -1 3 1414 1924 232 12 17 chr12 108699466 108699539 -12557991 - MTD LTR MaLR -6 413 342 3 1414 2967 177 62 9 chr12 108699539 108700085 -12557445 - RMER15 LTR ERVL 0 575 1 3 1414 1924 232 12 17 chr12 108700085 108700419 -12557111 - MTD LTR MaLR -78 341 8 3 1414 186 103 0 0 chr12 108700508 108700537 -12556993 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1414 257 351 0 21 chr12 108700542 108700553 -12556977 - MLT2C1 LTR ERVL -50 513 503 3 1414 513 0 0 0 chr12 108700553 108700610 -12556920 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1414 282 349 0 0 chr12 108700610 108700694 -12556836 - MLT2C1 LTR ERVL -61 502 416 3 1414 548 307 44 28 chr12 108700707 108700888 -12556642 - MLT2C1 LTR ERVL -195 202 19 3 1414 849 231 176 19 chr12 108701814 108702070 -12555460 - MTD LTR MaLR -123 296 1 3 1414 645 316 69 25 chr12 108702513 108702789 -12554741 - B4A SINE B4 -2 290 3 3 1414 199 325 117 0 chr12 108703947 108704024 -12553506 - L2c LINE L2 -41 3346 3261 3 1414 184 263 63 38 chr12 108704192 108704271 -12553259 - MIRb SINE MIR -125 143 63 3 1414 192 280 0 20 chr12 108704326 108704377 -12553153 - L2c LINE L2 -245 3142 3093 3 1414 301 320 45 45 chr12 108705687 108705844 -12551686 - HAL1-3A_ME LINE L1 -419 2439 2283 3 1414 315 269 139 51 chr12 108705825 108705962 -12551568 - HAL1-3A_ME LINE L1 -420 2438 2290 3 1414 324 347 13 39 chr12 108706349 108706505 -12551025 - MIRb SINE MIR -66 202 51 3 1414 201 211 0 0 chr12 108706564 108706616 -12550914 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1414 428 149 0 94 chr12 108706681 108706777 -12550753 - URR1B DNA MER1_type 0 225 139 3 1414 1210 61 0 0 chr12 108706829 108706976 -12550554 - B1_Mus1 SINE Alu 0 148 2 3 1414 779 133 163 0 chr12 108706976 108707111 -12550419 - URR1B DNA MER1_type -69 156 1 3 1414 765 155 12 12 chr12 108707445 108707608 -12549922 + CT-rich Low_complexity Low_complexity 1 163 0 3 1414 207 0 0 0 chr12 108709336 108709359 -12548171 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 3 1414 260 251 152 84 chr12 108711754 108711945 -12545585 - MIRc SINE MIR -56 212 9 3 1414 189 107 0 0 chr12 108712353 108712381 -12545149 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1414 535 311 96 57 chr12 108712448 108712632 -12544898 + L1MD2 LINE L1 5655 5838 -521 3 1414 357 24 0 0 chr12 108712632 108712674 -12544856 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1414 535 311 96 57 chr12 108712674 108712959 -12544571 + L1MD2 LINE L1 5839 6142 -217 3 1414 288 266 23 38 chr12 108713248 108713381 -12544149 + GA-rich Low_complexity Low_complexity 3 133 0 3 1414 3397 35 2 22 chr12 108713542 108713946 -12543584 + MTA_Mm LTR MaLR 1 396 0 3 1414 984 103 0 0 chr12 108715907 108716072 -12541458 + (TG)n Simple_repeat Simple_repeat 1 165 0 3 1414 433 213 6 6 chr12 108716093 108716268 -12541262 + (TG)n Simple_repeat Simple_repeat 2 176 0 3 1414 21 0 0 0 chr12 108716830 108716851 -12540679 + AT_rich Low_complexity Low_complexity 1 21 0 3 1414 317 261 14 0 chr12 108716914 108716983 -12540547 + MLT1A1 LTR MaLR 339 408 0 3 1414 734 270 0 22 chr12 108718605 108718783 -12538747 + B3 SINE B2 42 215 -1 3 1414 288 197 0 70 chr12 108718796 108718867 -12538663 + B4A SINE B4 217 282 -10 3 1414 492 337 30 0 chr12 108719087 108719253 -12538277 - B4A SINE B4 -121 171 1 3 1414 540 0 0 0 chr12 108720664 108720724 -12536806 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1414 180 0 0 0 chr12 108720935 108720955 -12536575 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1414 226 342 93 47 chr12 108721254 108721447 -12536083 + L2c LINE L2 3015 3216 -159 3 1414 540 193 0 0 chr12 108722987 108723096 -12534434 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 3 1414 459 0 0 0 chr12 108723855 108723906 -12533624 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1414 1267 247 113 37 chr12 108724029 108724462 -12533068 - Lx8 LINE L1 -84 7389 6924 3 1414 906 243 26 0 chr12 108724515 108724704 -12532826 - ORR1D1 LTR MaLR -1 373 180 3 1414 672 36 0 0 chr12 108724706 108724789 -12532741 + (GA)n Simple_repeat Simple_repeat 1 83 0 3 1414 2044 150 40 11 chr12 108724832 108725182 -12532348 - ORR1B1 LTR MaLR -34 360 1 3 1414 554 237 18 0 chr12 108725182 108725274 -12532256 - ORR1D1 LTR MaLR -280 94 1 3 1414 1248 287 45 66 chr12 108725279 108725749 -12531781 - Lx8 LINE L1 -598 6875 6416 3 1414 470 100 0 14 chr12 108726238 108726309 -12531221 - RMER19B LTR ERVK -12 890 821 3 1414 613 206 92 0 chr12 108726295 108726426 -12531104 - RMER19B LTR ERVK -239 663 521 3 1414 4139 166 52 55 chr12 108726418 108727241 -12530289 - RMER19B LTR ERVK -81 821 1 3 1414 184 237 0 0 chr12 108727382 108727420 -12530110 + MIRc SINE MIR 114 151 -117 3 1414 783 21 0 0 chr12 108728266 108728359 -12529171 + (GGGAGA)n Simple_repeat Simple_repeat 3 95 0 3 1414 2230 79 33 62 chr12 108729916 108730253 -12527277 + ORR1A2 LTR MaLR 1 327 0 3 1414 276 312 42 48 chr12 108730480 108730648 -12526882 - MIRb SINE MIR -31 237 71 3 1414 306 301 17 17 chr12 108730748 108730863 -12526667 + CT-rich Low_complexity Low_complexity 3 117 0 3 1414 489 34 0 0 chr12 108731703 108731762 -12525768 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1414 782 265 91 21 chr12 108731812 108732055 -12525475 - B4 SINE B4 -4 288 29 3 1414 750 167 0 6 chr12 108732513 108732573 -12524957 + (TGAG)n Simple_repeat Simple_repeat 1 59 0 3 1414 264 59 0 0 chr12 108732573 108732607 -12524923 + (TTAGGG)n Simple_repeat Simple_repeat 3 36 0 3 1414 966 152 0 8 chr12 108732607 108732880 -12524650 + (TGAG)n Simple_repeat Simple_repeat 1 270 0 3 1414 276 30 0 0 chr12 108732880 108732913 -12524617 + (TTAGGG)n Simple_repeat Simple_repeat 1 33 0 3 1414 954 160 0 5 chr12 108732913 108733252 -12524278 + (TGAG)n Simple_repeat Simple_repeat 1 337 0 3 1414 1082 246 86 97 chr12 108733960 108734342 -12523188 + MTEa LTR MaLR 2 379 0 3 1414 262 288 30 15 chr12 108734467 108734534 -12522996 + ID4_ SINE ID 16 83 0 3 1414 483 214 30 20 chr12 108735754 108736062 -12521468 + (TCCA)n Simple_repeat Simple_repeat 1 311 0 3 1414 239 260 45 135 chr12 108736693 108736804 -12520726 - MLT1H2 LTR MaLR -8 481 381 3 1414 783 270 27 89 chr12 108737260 108737346 -12520184 + B4A SINE B4 2 85 -207 3 1414 213 65 0 0 chr12 108737346 108737377 -12520153 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1414 783 270 27 89 chr12 108737377 108737583 -12519947 + B4A SINE B4 86 276 -16 3 1414 684 114 0 0 chr12 108737907 108738038 -12519492 + (TC)n Simple_repeat Simple_repeat 1 131 0 3 1414 405 0 0 0 chr12 108738038 108738083 -12519447 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1414 740 222 109 34 chr12 108738804 108739042 -12518488 - ORR1E LTR MaLR -2 357 102 3 1414 195 380 18 18 chr12 108740629 108740739 -12516791 + MIRb SINE MIR 114 223 -45 3 1414 847 297 81 42 chr12 108740897 108741231 -12516299 + ORR1E LTR MaLR 6 352 -7 3 1414 219 226 29 0 chr12 108741564 108741666 -12515864 + (TG)n Simple_repeat Simple_repeat 1 105 0 3 1414 770 278 95 16 chr12 108741727 108741979 -12515551 - B4A SINE B4 -15 277 6 3 1414 289 309 88 53 chr12 108742082 108743214 -12514316 + L1ME1 LINE L1 2336 3534 -2866 3 1414 1014 293 36 28 chr12 108743702 108744151 -12513379 + L1ME1 LINE L1 5732 6178 -249 3 1414 536 323 98 45 chr12 108745638 108745904 -12511626 + B4 SINE B4 2 281 -11 3 1414 180 0 0 0 chr12 108746429 108746449 -12511081 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1414 315 338 87 54 chr12 108747319 108747560 -12509970 + L1M5 LINE L1 5353 5601 -578 3 1414 509 297 69 41 chr12 108747577 108747795 -12509735 - MLT1A0 LTR MaLR -16 349 126 3 1414 929 232 57 87 chr12 108747797 108748169 -12509361 - MTD LTR MaLR -23 396 1 3 1414 198 0 0 0 chr12 108749301 108749323 -12508207 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1414 518 302 54 54 chr12 108749836 108750116 -12507414 + B4 SINE B4 1 280 -12 3 1414 396 0 0 0 chr12 108751564 108751608 -12505922 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1414 490 86 0 24 chr12 108751776 108751859 -12505671 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1414 998 273 54 18 chr12 108751867 108752147 -12505383 + B4A SINE B4 3 292 0 4 1414 386 267 23 0 chr12 108752152 108752324 -12505206 + (CA)n Simple_repeat Simple_repeat 2 177 0 4 1414 271 216 18 26 chr12 108752374 108752488 -12505042 + (CA)n Simple_repeat Simple_repeat 2 114 0 4 1414 202 35 69 0 chr12 108752488 108752517 -12505013 + (CATG)n Simple_repeat Simple_repeat 4 34 0 4 1414 546 197 14 7 chr12 108752517 108752665 -12504865 + (CA)n Simple_repeat Simple_repeat 1 149 0 4 1414 264 323 54 18 chr12 108752891 108753058 -12504472 - L1MA4 LINE L1 -155 6145 5973 4 1414 477 308 0 0 chr12 108753982 108754102 -12503428 + B4 SINE B4 171 290 -2 4 1414 401 0 0 20 chr12 108755283 108755333 -12502197 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1414 495 0 0 0 chr12 108757356 108757411 -12500119 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1414 324 0 0 0 chr12 108757411 108757446 -12500084 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1414 1336 204 50 28 chr12 108757650 108757932 -12499598 - Lx5 LINE L1 0 7050 6763 4 1414 408 40 0 0 chr12 108758106 108758156 -12499374 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1414 373 331 102 8 chr12 108758820 108758948 -12498582 - MER58A DNA MER1_type -25 199 60 4 1414 249 263 60 94 chr12 108758966 108759123 -12498407 + L2b LINE L2 3209 3386 -1 4 1414 345 320 121 41 chr12 108760284 108760574 -12496956 + L1M4 LINE L1 2473 2785 -3361 4 1414 25 0 0 0 chr12 108760668 108760693 -12496837 + AT_rich Low_complexity Low_complexity 1 25 0 4 1414 884 112 14 0 chr12 108760988 108761131 -12496399 + (GGAA)n Simple_repeat Simple_repeat 1 145 0 4 1414 1187 94 0 6 chr12 108761138 108761319 -12496211 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1414 312 322 222 24 chr12 108761319 108761645 -12495885 + L1MD LINE L1 2944 3335 -2811 4 1414 261 0 0 0 chr12 108761713 108761742 -12495788 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1414 1501 194 131 117 chr12 108761748 108762154 -12495376 - Lx4B LINE L1 -1 7057 6656 4 1414 1188 61 0 0 chr12 108762154 108762301 -12495229 - B1_Mus1 SINE Alu 0 148 2 4 1414 1501 194 131 117 chr12 108762301 108762442 -12495088 - Lx4B LINE L1 -403 6655 6503 4 1414 1429 241 97 7 chr12 108762430 108762873 -12494657 + Lx5 LINE L1 5978 6460 -590 4 1414 677 228 90 29 chr12 108762896 108763177 -12494353 + ORR1D1 LTR MaLR 1 368 -6 4 1414 633 223 25 0 chr12 108763787 108763908 -12493622 + B3 SINE B2 1 124 -92 4 1414 408 88 0 0 chr12 108764316 108764373 -12493157 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1414 367 315 210 48 chr12 108764389 108764803 -12492727 + L1M4 LINE L1 4252 4732 -1414 4 1414 685 205 8 0 chr12 108764838 108764960 -12492570 + B1_Mus1 SINE Alu 17 139 -9 4 1414 737 239 50 65 chr12 108765490 108765691 -12491839 - B3A SINE B2 0 198 1 4 1414 295 299 148 11 chr12 108765692 108765868 -12491662 + L1MC LINE L1 5308 5507 -837 4 1414 25 0 0 0 chr12 108766613 108766638 -12490892 + AT_rich Low_complexity Low_complexity 1 25 0 4 1414 291 128 0 0 chr12 108766946 108766993 -12490537 - MIR SINE MIR -139 123 77 4 1414 204 235 0 0 chr12 108767147 108767198 -12490332 + A-rich Low_complexity Low_complexity 1 51 0 4 1414 240 359 82 116 chr12 108767269 108767537 -12489993 + B4A SINE B4 15 273 -19 4 1414 387 41 0 0 chr12 108767542 108767591 -12489939 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1414 516 233 0 0 chr12 108768638 108768784 -12488746 + (TA)n Simple_repeat Simple_repeat 1 146 0 4 1414 4351 131 82 4 chr12 108769235 108769919 -12487611 - RMER19A LTR ERVK 0 737 1 4 1414 629 325 32 46 chr12 108770451 108770468 -12487062 + B3 SINE B2 1 13 -203 4 1414 1135 162 0 143 chr12 108770468 108770727 -12486803 - URR1B DNA MER1_type 0 225 4 4 1414 629 325 32 46 chr12 108770727 108770925 -12486605 + B3 SINE B2 14 213 -3 4 1414 305 306 167 53 chr12 108771259 108771559 -12485971 + L1ME3B LINE L1 5535 5868 -372 4 1414 1071 99 0 0 chr12 108771564 108771736 -12485794 + (TG)n Simple_repeat Simple_repeat 1 172 0 4 1414 577 309 0 27 chr12 108772078 108772261 -12485269 - B3A SINE B2 -18 180 3 4 1414 264 292 246 0 chr12 108772463 108772593 -12484937 - RMER30 DNA MER1_type -1 201 40 4 1414 912 336 11 11 chr12 108772783 108773060 -12484470 + B4 SINE B4 9 285 -7 4 1414 386 159 55 0 chr12 108773078 108773223 -12484307 + (CAGA)n Simple_repeat Simple_repeat 4 156 0 4 1414 280 347 42 54 chr12 108773407 108773812 -12483718 + L1M4 LINE L1 3611 4010 -2136 4 1414 343 290 10 10 chr12 108773925 108774026 -12483504 + G-rich Low_complexity Low_complexity 1 101 0 4 1414 386 291 71 45 chr12 108774037 108774235 -12483295 + L1MD LINE L1 4133 4335 -1811 4 1414 479 295 103 51 chr12 108774575 108774886 -12482644 - RMER15 LTR ERVL -34 541 215 4 1414 995 308 139 27 chr12 108775942 108776466 -12481064 - Lx8 LINE L1 -1 7472 6890 4 1414 366 356 40 36 chr12 108776525 108776749 -12480781 - MER46C DNA MER2_type -112 226 2 4 1414 315 289 50 20 chr12 108776865 108776964 -12480566 + MTE2a-int LTR MaLR 1479 1580 0 4 1414 1197 231 44 93 chr12 108776963 108777307 -12480223 + MTE2a LTR MaLR 1 327 -52 4 1414 431 98 0 24 chr12 108778524 108778608 -12478922 + (CAGAGA)n Simple_repeat Simple_repeat 6 87 0 4 1414 252 0 0 0 chr12 108778775 108778803 -12478727 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1414 252 0 0 0 chr12 108778803 108778830 -12478700 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1414 1005 33 0 0 chr12 108779224 108779345 -12478185 + (TC)n Simple_repeat Simple_repeat 2 122 0 4 1414 405 0 0 0 chr12 108779345 108779389 -12478141 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1414 681 279 28 6 chr12 108779394 108779574 -12477956 - B4 SINE B4 0 292 109 4 1414 225 0 0 0 chr12 108779930 108779955 -12477575 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1414 206 160 20 0 chr12 108779970 108780020 -12477510 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1414 204 67 0 0 chr12 108780023 108780053 -12477477 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1414 214 304 36 0 chr12 108780442 108780498 -12477032 + PB1 SINE Alu 18 75 -52 4 1414 401 287 53 67 chr12 108780935 108781281 -12476249 - L1ME1 LINE L1 -131 6048 5682 4 1414 522 319 63 0 chr12 108781282 108781489 -12476041 - MER34 LTR ERV1 -2 540 321 4 1414 191 231 81 93 chr12 108781500 108781586 -12475944 - L3 LINE CR1 -4402 87 3 4 1414 227 31 0 30 chr12 108781593 108781626 -12475904 + (TGGGGG)n Simple_repeat Simple_repeat 1 32 0 4 1414 228 235 20 0 chr12 108781630 108781681 -12475849 - MER34 LTR ERV1 -443 128 77 4 1414 323 349 89 44 chr12 108782000 108782563 -12474967 - L1ME1 LINE L1 -835 5311 4709 4 1414 585 330 16 10 chr12 108782684 108782877 -12474653 + B4A SINE B4 5 198 -94 4 1414 378 0 0 0 chr12 108782965 108783007 -12474523 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1414 315 246 39 0 chr12 108783018 108783100 -12474430 - B4A SINE B4 -195 97 5 4 1414 550 301 130 74 chr12 108783516 108783961 -12473569 - L1ME1 LINE L1 -2875 3271 2802 4 1414 265 196 0 18 chr12 108784553 108784610 -12472920 - L1M3 LINE L1 -3819 2321 2266 4 1414 496 264 38 133 chr12 108784982 108785016 -12472514 - B2_Mm2 SINE B2 -5 190 166 4 1414 234 0 0 0 chr12 108785016 108785042 -12472488 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1414 710 264 38 133 chr12 108785042 108785217 -12472313 - B3A SINE B2 -30 168 1 4 1414 886 342 95 2 chr12 108785257 108785679 -12471851 + MLT1C LTR MaLR 5 465 -2 4 1414 233 216 11 54 chr12 108786011 108786104 -12471426 - Charlie19a DNA Charlie -64 322 234 4 1414 252 0 0 0 chr12 108786402 108786430 -12471100 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1414 369 0 0 0 chr12 108789477 108789518 -12468012 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 1415 191 327 75 0 chr12 108790686 108790793 -12466737 + L2b LINE L2 3261 3375 0 4 1415 260 286 54 30 chr12 108791786 108791951 -12465579 - MIR3 SINE MIR -34 174 8 4 1415 223 138 261 0 chr12 108793679 108793744 -12463786 - MIR3 SINE MIR -21 187 106 4 1415 1267 42 36 0 chr12 108794173 108795222 -12462308 + (TCTA)n Simple_repeat Simple_repeat 1 1087 0 4 1415 496 299 260 3 chr12 108796722 108797034 -12460496 + MT2A LTR ERVL 134 525 -8 4 1415 1079 66 0 42 chr12 108797036 108797178 -12460352 + B1_Mus1 SINE Alu 1 136 -12 4 1415 860 98 15 0 chr12 108797178 108797310 -12460220 + (GAAA)n Simple_repeat Simple_repeat 2 135 0 4 1415 745 232 109 40 chr12 108797996 108798198 -12459332 - B3 SINE B2 0 216 1 4 1415 414 159 0 0 chr12 108798666 108798754 -12458776 + C-rich Low_complexity Low_complexity 2 89 0 4 1415 533 248 158 7 chr12 108799405 108799676 -12457854 - MTEa LTR MaLR -1 378 21 4 1415 358 301 176 63 chr12 108800124 108800379 -12457151 + MTEa LTR MaLR 65 348 -31 4 1415 516 326 157 47 chr12 108800462 108800761 -12456769 + MTE-int LTR MaLR 44 375 -1205 4 1415 307 250 0 14 chr12 108801373 108801442 -12456088 + MTE-int LTR MaLR 1366 1433 -147 4 1415 727 221 73 0 chr12 108801566 108801702 -12455828 - RSINE1 SINE B4 -17 148 3 4 1415 291 233 107 27 chr12 108803058 108803133 -12454397 - ID4_ SINE ID 0 83 3 4 1415 272 333 110 10 chr12 108803157 108803257 -12454273 - PB1 SINE Alu -2 125 16 4 1415 315 302 102 30 chr12 108804007 108804028 -12453502 - B2_Mm2 SINE B2 -11 184 163 4 1415 540 68 0 0 chr12 108804028 108804101 -12453429 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1415 481 303 110 0 chr12 108804101 108804246 -12453284 - B3A SINE B2 -32 166 6 4 1415 217 362 121 0 chr12 108805611 108805727 -12451803 - MIRb SINE MIR -91 177 48 4 1415 216 262 123 12 chr12 108806623 108806704 -12450826 + MIR SINE MIR 69 158 -104 4 1415 605 283 55 10 chr12 108807725 108807925 -12449605 - Tigger7 DNA MER2_type -5 2486 2278 4 1415 919 340 71 16 chr12 108807927 108808307 -12449223 - Tigger7 DNA MER2_type -2080 411 11 4 1415 187 269 146 31 chr12 108808535 108808631 -12448899 - L2a LINE L2 -273 3153 3047 4 1415 546 349 129 8 chr12 108809207 108809447 -12448083 + RMER15 LTR ERVL 274 542 -33 4 1415 241 288 18 12 chr12 108809747 108809851 -12447679 + GA-rich Low_complexity Low_complexity 1 104 0 4 1415 306 297 93 7 chr12 108810184 108810326 -12447204 - MIRc SINE MIR -51 217 65 5 1415 620 220 0 25 chr12 108811361 108811482 -12446048 - B1F2 SINE Alu 0 149 32 5 1415 330 284 53 106 chr12 108811488 108811789 -12445741 + MLT1A1 LTR MaLR 84 408 0 5 1415 26 0 0 0 chr12 108812091 108812117 -12445413 + AT_rich Low_complexity Low_complexity 1 26 0 5 1415 1053 44 96 0 chr12 108813100 108813235 -12444295 + B1_Mus1 SINE Alu 1 148 0 5 1415 1099 270 47 0 chr12 108813416 108813618 -12443912 + B4 SINE B4 3 216 -76 5 1415 315 0 0 0 chr12 108813618 108813653 -12443877 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 5 1415 1099 270 47 0 chr12 108813653 108813724 -12443806 + B4 SINE B4 217 287 -5 5 1415 534 31 0 0 chr12 108813982 108814046 -12443484 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1415 404 265 10 10 chr12 108814052 108814155 -12443375 - B4A SINE B4 -4 288 186 5 1415 201 364 70 0 chr12 108815050 108815179 -12442351 - MIRc SINE MIR -20 248 111 5 1415 297 0 0 0 chr12 108815684 108815717 -12441813 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1415 660 150 0 0 chr12 108815878 108815991 -12441539 + (TG)n Simple_repeat Simple_repeat 1 113 0 5 1415 819 296 70 23 chr12 108816300 108816688 -12440842 - MLT1C LTR MaLR -55 412 7 5 1415 726 253 269 21 chr12 108816804 108817093 -12440437 - Lx8 LINE L1 -1 7472 7112 5 1415 740 274 51 14 chr12 108817999 108818214 -12439316 + B4 SINE B4 1 223 -69 5 1415 24 0 0 0 chr12 108818222 108818246 -12439284 + AT_rich Low_complexity Low_complexity 1 24 0 5 1415 763 200 0 24 chr12 108818287 108818539 -12438991 + (CA)n Simple_repeat Simple_repeat 1 245 0 5 1415 392 232 0 8 chr12 108818576 108818702 -12438828 + (CA)n Simple_repeat Simple_repeat 2 126 0 5 1415 180 231 0 0 chr12 108818720 108818772 -12438758 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 5 1415 213 121 0 0 chr12 108818831 108818864 -12438666 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1415 274 289 9 19 chr12 108818964 108819070 -12438460 + MER20 DNA MER1_type 26 130 -89 5 1415 32 43 0 0 chr12 108819603 108819649 -12437881 + AT_rich Low_complexity Low_complexity 1 46 0 5 1415 426 20 0 0 chr12 108820353 108820404 -12437126 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1415 386 327 126 37 chr12 108822737 108823083 -12434447 - LTR33A LTR ERVL -50 481 89 5 1415 405 299 21 63 chr12 108823301 108823444 -12434086 - B1F2 SINE Alu -2 147 11 5 1415 731 286 10 25 chr12 108823321 108823525 -12434005 - ID_B1 SINE B4 -15 209 9 5 1415 428 362 61 47 chr12 108824457 108824735 -12432795 - MamRep137 DNA TcMar? -8 436 155 5 1415 1067 203 0 10 chr12 108824862 108825056 -12432474 - MTE2a LTR MaLR -130 249 58 5 1415 288 271 0 0 chr12 108825057 108825127 -12432403 - MTE2a LTR MaLR -292 87 18 5 1415 375 277 88 115 chr12 108825193 108825454 -12432076 + B4A SINE B4 39 292 0 5 1415 224 306 16 0 chr12 108825456 108825518 -12432012 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1415 260 200 33 0 chr12 108826618 108826738 -12430792 + (TG)n Simple_repeat Simple_repeat 1 124 0 5 1415 633 141 17 28 chr12 108826779 108827145 -12430385 + (TG)n Simple_repeat Simple_repeat 1 361 0 5 1415 293 331 62 6 chr12 108827208 108827369 -12430161 - B4A SINE B4 -35 257 88 5 1415 628 299 17 11 chr12 108827373 108827552 -12429978 - B4 SINE B4 -110 182 3 5 1415 2344 99 12 12 chr12 108827971 108828298 -12429232 - ORR1A2 LTR MaLR 0 327 1 5 1415 523 306 31 25 chr12 108828310 108828471 -12429059 + RSINE1 SINE B4 4 165 0 5 1415 307 342 109 39 chr12 108828601 108829010 -12428520 - MLT1C LTR MaLR -8 459 4 5 1415 249 310 0 14 chr12 108830225 108830297 -12427233 + GA-rich Low_complexity Low_complexity 1 71 0 5 1415 202 247 12 38 chr12 108831187 108831267 -12426263 + T-rich Low_complexity Low_complexity 2 79 0 5 1415 645 14 0 0 chr12 108831385 108831459 -12426071 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 5 1415 248 342 24 9 chr12 108831470 108831584 -12425946 - PB1D10 SINE Alu -31 118 1 5 1415 622 335 80 0 chr12 108831917 108832105 -12425425 - B4A SINE B4 -88 204 2 5 1415 1167 51 0 0 chr12 108832169 108832306 -12425224 + B1_Mus2 SINE Alu 1 137 -10 5 1415 602 13 0 13 chr12 108832306 108832382 -12425148 + (CAAAA)n Simple_repeat Simple_repeat 2 76 0 5 1415 432 0 0 0 chr12 108832792 108832840 -12424690 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1415 219 139 0 0 chr12 108833487 108833523 -12424007 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1415 368 231 0 49 chr12 108833712 108833794 -12423736 + PB1D10 SINE Alu 18 95 -22 5 1415 423 0 0 0 chr12 108833932 108833979 -12423551 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1415 908 240 151 27 chr12 108834386 108834724 -12422806 - MTD LTR MaLR -22 397 18 5 1415 620 188 7 0 chr12 108835907 108836045 -12421485 + (TG)n Simple_repeat Simple_repeat 2 140 0 5 1415 402 271 0 25 chr12 108836355 108836476 -12421054 - MTD LTR MaLR -254 165 48 5 1415 976 249 80 11 chr12 108836918 108837295 -12420235 - Charlie4a DNA MER1_type -89 419 17 5 1415 809 104 17 34 chr12 108837790 108837969 -12419561 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 5 1415 666 117 0 0 chr12 108838026 108838137 -12419393 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 5 1415 433 218 46 17 chr12 108838202 108838375 -12419155 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 5 1415 378 151 0 0 chr12 108838375 108838448 -12419082 + (TGGA)n Simple_repeat Simple_repeat 3 75 0 5 1415 275 302 182 0 chr12 108838980 108839106 -12418424 + RSINE1 SINE B4 1 149 -16 5 1415 531 43 0 0 chr12 108839128 108839198 -12418332 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 1415 577 261 29 43 chr12 108839240 108839380 -12418150 + RSINE1 SINE B4 4 141 -24 5 1415 189 0 0 0 chr12 108839390 108839411 -12418119 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1415 432 0 0 0 chr12 108839413 108839461 -12418069 + (CAAT)n Simple_repeat Simple_repeat 1 48 0 5 1415 1066 95 0 13 chr12 108839483 108839633 -12417897 + B1_Mus1 SINE Alu 1 148 0 5 1415 24 0 0 0 chr12 108840620 108840644 -12416886 + AT_rich Low_complexity Low_complexity 1 24 0 5 1415 22 0 0 0 chr12 108840685 108840707 -12416823 + AT_rich Low_complexity Low_complexity 1 22 0 5 1415 819 251 43 10 chr12 108841476 108841685 -12415845 + B3 SINE B2 1 216 0 5 1415 643 316 6 50 chr12 108841912 108842092 -12415438 + B4 SINE B4 1 172 -120 5 1415 719 174 0 6 chr12 108842363 108842542 -12414988 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1415 306 0 0 0 chr12 108842543 108842577 -12414953 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1415 342 0 0 0 chr12 108842577 108842614 -12414916 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1415 8367 47 1 2 chr12 108843093 108844245 -12413285 - L1Md_F2 LINE L1 -3 6579 5429 5 1415 252 159 56 70 chr12 108845061 108845203 -12412327 + GA-rich Low_complexity Low_complexity 1 140 0 5 1415 229 325 22 35 chr12 108845537 108845786 -12411744 + L1M2 LINE L1 2485 2535 -4314 5 1415 24 0 0 0 chr12 108846582 108846606 -12410924 + AT_rich Low_complexity Low_complexity 1 24 0 5 1415 1072 108 0 0 chr12 108846764 108846912 -12410618 + B1_Mus1 SINE Alu 1 148 0 5 1415 606 116 0 0 chr12 108846917 108847007 -12410523 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 5 1415 750 78 0 0 chr12 108847007 108847109 -12410421 + (GAGAA)n Simple_repeat Simple_repeat 2 103 0 5 1415 315 0 0 0 chr12 108847752 108847787 -12409743 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1415 560 261 0 43 chr12 108847787 108847927 -12409603 - RSINE1 SINE B4 -24 141 8 5 1415 284 331 32 0 chr12 108848162 108848319 -12409211 + L2 LINE L2 2702 2863 -556 5 1415 1331 193 50 114 chr12 108849300 108849704 -12407826 - MTE2a LTR MaLR 0 379 2 5 1415 288 111 0 0 chr12 108850176 108850221 -12407309 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 1415 402 257 134 58 chr12 108850266 108850489 -12407041 - Lx8 LINE L1 0 7473 7234 5 1415 615 48 0 0 chr12 108851830 108851913 -12405617 + (CAAAA)n Simple_repeat Simple_repeat 1 83 0 5 1415 314 0 49 0 chr12 108852249 108852290 -12405240 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1415 258 229 48 16 chr12 108852291 108852353 -12405177 - ID2 SINE ID -9 74 11 5 1415 1183 244 123 14 chr12 108852413 108852778 -12404752 - MTD LTR MaLR 0 419 15 5 1415 559 299 92 18 chr12 108852964 108853192 -12404338 + Lx7 LINE L1 5616 5860 -1836 5 1415 1223 48 0 0 chr12 108853300 108853446 -12404084 + B1_Mm SINE Alu 2 147 0 5 1415 378 239 94 40 chr12 108855143 108855307 -12402223 + L1MD LINE L1 3600 3771 -2369 5 1415 618 300 5 77 chr12 108856959 108857154 -12400376 + B3A SINE B2 2 182 -16 5 1415 256 33 0 0 chr12 108857367 108857397 -12400133 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 5 1415 559 105 17 34 chr12 108857397 108857515 -12400015 + G-rich Low_complexity Low_complexity 3 118 0 5 1415 652 32 10 21 chr12 108857520 108857616 -12399914 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 5 1415 1321 235 84 9 chr12 108858865 108859209 -12398321 - ORR1D2 LTR MaLR 0 370 1 5 1415 236 174 0 0 chr12 108859830 108859876 -12397654 + MTEa LTR MaLR 8 53 -326 5 1415 206 362 0 0 chr12 108860915 108860984 -12396546 + L2a LINE L2 3303 3371 -55 5 1415 543 16 0 0 chr12 108861090 108861154 -12396376 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1415 239 289 62 72 chr12 108861244 108861341 -12396189 + ID_B1 SINE B4 81 176 -48 5 1415 243 228 138 12 chr12 108861281 108861361 -12396169 + PB1 SINE Alu 36 125 -2 5 1415 239 262 0 101 chr12 108861370 108861459 -12396071 + ID2 SINE ID 2 81 -2 5 1415 305 322 72 20 chr12 108862075 108862227 -12395303 - MER3 DNA MER1_type -1 208 49 5 1415 410 19 37 0 chr12 108862300 108862354 -12395176 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 5 1415 862 300 50 0 chr12 108863711 108863971 -12393559 + B4 SINE B4 1 273 -19 5 1415 468 0 0 0 chr12 108863994 108864046 -12393484 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1415 725 292 80 36 chr12 108864877 108865214 -12392316 - ORR1E LTR MaLR 0 359 8 6 1415 188 231 43 71 chr12 108868717 108868787 -12388743 + MIRb SINE MIR 185 252 -16 6 1415 399 89 0 0 chr12 108869266 108869322 -12388208 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1415 2016 91 35 13 chr12 108869645 108869957 -12387573 + ORR1A2 LTR MaLR 1 319 -8 6 1415 531 0 0 0 chr12 108871473 108871532 -12385998 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1415 237 208 0 0 chr12 108871609 108871681 -12385849 + CT-rich Low_complexity Low_complexity 1 72 0 6 1415 809 233 114 70 chr12 108871776 108872048 -12385482 - B4A SINE B4 0 292 9 6 1415 396 71 0 0 chr12 108872253 108872309 -12385221 + (GAA)n Simple_repeat Simple_repeat 2 57 0 6 1415 1212 106 0 0 chr12 108872309 108872488 -12385042 + (GGA)n Simple_repeat Simple_repeat 2 180 0 6 1415 216 77 19 37 chr12 108872918 108872972 -12384558 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 6 1415 649 328 13 39 chr12 108873109 108873448 -12384082 + MLT1A0 LTR MaLR 26 455 -12 6 1415 324 0 0 0 chr12 108873640 108873676 -12383854 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 6 1415 444 19 0 0 chr12 108878513 108878566 -12378964 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1415 552 141 0 0 chr12 108878566 108878687 -12378843 + (GA)n Simple_repeat Simple_repeat 2 122 0 6 1415 837 218 102 25 chr12 108878687 108878989 -12378541 + MTD LTR MaLR 48 397 -10 6 1415 1239 260 84 3 chr12 108880531 108880878 -12376652 + MTEa LTR MaLR 3 377 -2 6 1415 277 323 10 0 chr12 108881084 108881180 -12376350 + PB1D10 SINE Alu 2 98 -19 6 1415 570 304 18 63 chr12 108881934 108882252 -12375278 + Lx9 LINE L1 6924 7259 -385 6 1415 1498 41 0 15 chr12 108882273 108882691 -12374839 + (GAA)n Simple_repeat Simple_repeat 1 411 0 6 1415 1011 161 0 0 chr12 108882691 108882871 -12374659 + GA-rich Low_complexity Low_complexity 1 180 0 6 1415 419 0 0 70 chr12 108882871 108882883 -12374647 + (GAA)n Simple_repeat Simple_repeat 1 12 0 6 1415 329 288 124 25 chr12 108882883 108882952 -12374578 + Lx9 LINE L1 7349 7431 -213 6 1415 408 20 0 0 chr12 108882952 108883001 -12374529 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1415 329 288 124 25 chr12 108883001 108883052 -12374478 + Lx9 LINE L1 7432 7481 -163 6 1415 613 122 45 28 chr12 108883215 108883392 -12374138 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1415 539 228 54 81 chr12 108884348 108884496 -12373034 + RSINE1 SINE B4 16 159 -6 6 1415 28 0 0 0 chr12 108884501 108884529 -12373001 + AT_rich Low_complexity Low_complexity 1 28 0 6 1415 25 31 0 0 chr12 108884594 108884626 -12372904 + AT_rich Low_complexity Low_complexity 1 32 0 6 1415 807 299 29 33 chr12 108884937 108885179 -12372351 + B4 SINE B4 52 292 0 6 1415 396 287 0 0 chr12 108885216 108885390 -12372140 + (CA)n Simple_repeat Simple_repeat 1 174 0 6 1415 187 247 49 0 chr12 108885402 108885483 -12372047 + (CATG)n Simple_repeat Simple_repeat 1 85 0 6 1415 1269 142 53 10 chr12 108885633 108885840 -12371690 + B3 SINE B2 1 216 0 6 1415 958 172 191 0 chr12 108887017 108887232 -12370298 - MTD LTR MaLR -129 290 35 6 1415 946 278 36 14 chr12 108887226 108887507 -12370023 + MTE2b LTR MaLR 60 346 -33 6 1415 184 355 6 0 chr12 108888718 108888805 -12368725 + MIR SINE MIR 34 121 -147 6 1415 2212 107 3 109 chr12 108889088 108889454 -12368076 - ORR1A2 LTR MaLR 0 327 1 6 1415 638 288 0 7 chr12 108889799 108889946 -12367584 + RSINE1 SINE B4 3 148 -17 6 1415 192 40 0 0 chr12 108889960 108889985 -12367545 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1415 359 132 0 14 chr12 108891049 108891118 -12366412 + (AGGGGG)n Simple_repeat Simple_repeat 6 73 0 6 1415 225 190 51 0 chr12 108891321 108891400 -12366130 + CT-rich Low_complexity Low_complexity 6 88 0 6 1415 260 295 121 85 chr12 108892562 108892869 -12364661 + L1MB2 LINE L1 5603 5920 -251 6 1415 247 237 17 0 chr12 108893007 108893066 -12364464 + L1MB2 LINE L1 6113 6172 -11 6 1415 202 189 0 0 chr12 108893384 108893421 -12364109 + G-rich Low_complexity Low_complexity 1 37 0 6 1415 1304 77 135 20 chr12 108893999 108894115 -12363415 + L1Md_F2 LINE L1 6360 6475 -107 6 1415 204 40 0 0 chr12 108894115 108894140 -12363390 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 6 1415 1304 77 135 20 chr12 108894140 108894223 -12363307 + L1Md_F2 LINE L1 6476 6581 -1 6 1415 206 227 0 0 chr12 108894269 108894313 -12363217 + (CAGT)n Simple_repeat Simple_repeat 3 46 0 6 1415 203 195 0 24 chr12 108894317 108894401 -12363129 + (TCTCTG)n Simple_repeat Simple_repeat 1 82 0 6 1415 393 237 19 32 chr12 108894411 108894568 -12362962 + (TCTG)n Simple_repeat Simple_repeat 4 158 0 6 1415 374 0 22 0 chr12 108894587 108894633 -12362897 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1415 441 0 0 0 chr12 108894633 108894681 -12362849 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1415 182 164 195 37 chr12 108894740 108894822 -12362708 - MIRc SINE MIR -82 186 89 6 1415 21 0 0 0 chr12 108896754 108896775 -12360755 + AT_rich Low_complexity Low_complexity 1 21 0 6 1415 802 281 171 12 chr12 108897893 108898139 -12359391 - MTEb LTR MaLR -7 372 96 6 1415 567 0 0 0 chr12 108898139 108898202 -12359328 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 1415 802 281 171 12 chr12 108898202 108898276 -12359254 - MTEb LTR MaLR -284 95 3 6 1415 225 0 0 0 chr12 108899071 108899096 -12358434 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1415 471 276 89 30 chr12 108899128 108899296 -12358234 - B4A SINE B4 -22 270 93 6 1415 229 284 24 47 chr12 108899320 108899405 -12358125 - B4A SINE B4 -185 107 25 6 1415 202 154 0 25 chr12 108899525 108899565 -12357965 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 6 1415 414 0 0 0 chr12 108900078 108900124 -12357406 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1415 260 326 87 22 chr12 108900331 108900516 -12357014 - L1MD3 LINE L1 -306 7689 7493 6 1415 296 325 140 88 chr12 108900602 108900953 -12356577 - L3 LINE CR1 -595 3894 3526 6 1415 1236 253 56 50 chr12 108901884 108902242 -12355288 - MTEa LTR MaLR 0 379 20 6 1415 257 234 0 30 chr12 108902574 108902640 -12354890 + GA-rich Low_complexity Low_complexity 1 64 0 6 1415 25 31 0 0 chr12 108902677 108902709 -12354821 + AT_rich Low_complexity Low_complexity 1 32 0 6 1415 494 281 150 0 chr12 108903215 108903368 -12354162 + B4 SINE B4 103 278 -14 6 1415 513 0 0 0 chr12 108903372 108903429 -12354101 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1415 623 208 115 47 chr12 108904519 108904711 -12352819 - B3A SINE B2 -5 211 7 6 1415 348 260 38 53 chr12 108904721 108904756 -12352774 - ID_B1 SINE B4 -46 246 139 6 1415 701 148 87 0 chr12 108904756 108904871 -12352659 - B1_Mur4 SINE Alu -17 133 9 6 1415 348 260 38 53 chr12 108904871 108904888 -12352642 - ID_B1 SINE B4 -46 138 79 6 1415 251 236 29 6 chr12 108905247 108905425 -12352105 + CT-rich Low_complexity Low_complexity 1 182 0 6 1415 221 246 48 46 chr12 108906044 108906156 -12351374 - MIRc SINE MIR -47 215 109 6 1415 971 263 23 69 chr12 108906412 108906673 -12350857 + B4 SINE B4 44 292 0 6 1415 840 236 69 0 chr12 108906766 108906940 -12350590 + B3 SINE B2 1 186 -30 6 1415 647 109 18 0 chr12 108906945 108907055 -12350475 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 6 1415 186 309 11 110 chr12 108907169 108907260 -12350270 - MIR SINE MIR -61 147 66 6 1415 427 349 10 25 chr12 108909250 108909450 -12348080 - Lx8 LINE L1 -143 7330 7134 6 1415 301 306 59 10 chr12 108909577 108909699 -12347831 - RMER4B LTR ERVK -1 584 352 6 1415 465 66 0 0 chr12 108909867 108909928 -12347602 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 6 1415 542 188 229 29 chr12 108909929 108909974 -12347556 - RMER4B LTR ERVK -365 220 155 6 1415 534 67 0 0 chr12 108909974 108910049 -12347481 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 1415 542 188 229 29 chr12 108910049 108910173 -12347357 - RMER4B LTR ERVK -431 154 17 6 1415 356 258 41 0 chr12 108910689 108910775 -12346755 + MER58B DNA MER1_type 252 341 0 6 1415 51 17 0 0 chr12 108911988 108912046 -12345484 + AT_rich Low_complexity Low_complexity 1 58 0 6 1415 189 107 0 0 chr12 108912331 108912359 -12345171 + (CTCA)n Simple_repeat Simple_repeat 4 31 0 6 1415 236 207 17 33 chr12 108914175 108914235 -12343295 + MLT1I LTR MaLR 352 410 -1 6 1415 1071 218 55 40 chr12 108914851 108915124 -12342406 - B4 SINE B4 -14 278 2 6 1415 195 42 0 0 chr12 108915808 108915832 -12341698 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1415 477 179 0 0 chr12 108916404 108916527 -12341003 + (TG)n Simple_repeat Simple_repeat 2 124 0 6 1415 693 299 56 49 chr12 108916540 108916807 -12340723 - B4A SINE B4 0 292 24 6 1415 308 301 125 15 chr12 108916880 108917255 -12340275 - L1MB2 LINE L1 -68 6115 5686 6 1415 521 224 28 56 chr12 108917296 108917438 -12340092 + ORR1D2 LTR MaLR 233 370 0 6 1415 186 189 0 0 chr12 108917795 108917832 -12339698 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 6 1415 465 19 0 0 chr12 108919546 108919600 -12337930 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1416 276 319 0 11 chr12 108920994 108921086 -12336444 + Lx8 LINE L1 7034 7124 -349 6 1416 312 263 233 16 chr12 108921123 108921147 -12336383 + RMER15 LTR ERVL 341 364 -211 6 1416 342 0 0 0 chr12 108921147 108921185 -12336345 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1416 312 263 233 16 chr12 108921185 108921353 -12336177 + RMER15 LTR ERVL 365 574 -1 6 1416 328 247 31 51 chr12 108922016 108922114 -12335416 + MIR3 SINE MIR 83 178 -30 6 1416 261 119 0 0 chr12 108922446 108922488 -12335042 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 6 1416 315 0 0 0 chr12 108922488 108922523 -12335007 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1416 261 276 28 101 chr12 108922768 108922891 -12334639 - MIR SINE MIR -63 145 34 6 1416 289 316 81 69 chr12 108924263 108924540 -12332990 + MLT1E1A LTR MaLR 306 611 -69 6 1416 495 0 0 0 chr12 108924586 108924641 -12332889 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1416 498 246 0 0 chr12 108925065 108925232 -12332298 + (CA)n Simple_repeat Simple_repeat 1 167 0 6 1416 913 291 11 0 chr12 108925244 108925529 -12332001 - Lx8 LINE L1 -329 7144 6857 6 1416 246 164 91 102 chr12 108925530 108925618 -12331912 + RLTR16 LTR ERVK 377 463 -42 6 1416 705 327 113 34 chr12 108925681 108925944 -12331586 - L1M5 LINE L1 -789 5357 5090 7 1416 366 23 0 0 chr12 108925944 108925987 -12331543 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1416 705 327 113 34 chr12 108925987 108926289 -12331241 - L1M5 LINE L1 -1057 5089 4748 7 1416 456 340 74 30 chr12 108926457 108926887 -12330643 + L1ME2 LINE L1 5606 6054 -110 7 1416 198 0 0 0 chr12 108926915 108926937 -12330593 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1416 734 277 98 66 chr12 108927087 108927361 -12330169 + B4A SINE B4 10 292 0 7 1416 683 224 59 7 chr12 108927512 108927665 -12329865 - RSINE1 SINE B4 -2 163 3 7 1416 188 245 143 0 chr12 108928278 108928327 -12329203 - MIR SINE MIR -89 173 118 7 1416 210 267 21 113 chr12 108929939 108930036 -12327494 + MIRb SINE MIR 101 188 -80 7 1416 22 0 0 0 chr12 108931359 108931381 -12326149 + AT_rich Low_complexity Low_complexity 1 22 0 7 1416 359 310 142 25 chr12 108932839 108933045 -12324485 + MLT1C LTR MaLR 6 232 -395 7 1416 22 0 0 0 chr12 108933246 108933268 -12324262 + AT_rich Low_complexity Low_complexity 1 22 0 7 1416 663 48 0 0 chr12 108933524 108933607 -12323923 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 7 1416 1468 116 73 16 chr12 108934777 108935023 -12322507 + MT2C_Mm LTR ERVL 216 475 0 7 1416 471 325 138 17 chr12 108935047 108935279 -12322251 + MLT1C LTR MaLR 203 462 -5 7 1416 607 296 85 77 chr12 108935667 108936007 -12321523 - ORR1E LTR MaLR -2 357 15 7 1416 507 299 55 7 chr12 108936188 108936333 -12321197 + B3A SINE B2 24 175 -23 7 1416 1019 137 6 0 chr12 108936339 108936514 -12321016 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 7 1416 531 82 0 0 chr12 108936538 108936611 -12320919 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 7 1416 1661 277 113 0 chr12 108937208 108937764 -12319766 - Lx8 LINE L1 -147 7326 6708 7 1416 477 313 48 113 chr12 108938412 108938722 -12318808 + B4 SINE B4 2 291 -1 7 1416 283 288 50 17 chr12 108939115 108939235 -12318295 - MIRc SINE MIR -143 125 2 7 1416 411 173 0 0 chr12 108939403 108939484 -12318046 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 1416 283 273 0 15 chr12 108940634 108940701 -12316829 + ID4_ SINE ID 3 68 -15 7 1416 306 67 0 0 chr12 108940711 108940756 -12316774 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1416 233 197 0 16 chr12 108940796 108940858 -12316672 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1416 1307 208 42 8 chr12 108941683 108941945 -12315585 - MTC LTR MaLR 0 421 151 7 1416 1226 228 32 42 chr12 108941922 108942206 -12315324 + MTD LTR MaLR 135 415 -4 7 1416 218 254 33 33 chr12 108943139 108943200 -12314330 - RSINE1 SINE B4 -102 63 3 7 1416 703 323 21 15 chr12 108943200 108943411 -12314119 - B4 SINE B4 -70 222 18 7 1416 263 93 23 0 chr12 108943426 108943469 -12314061 + (TGG)n Simple_repeat Simple_repeat 1 44 0 7 1416 638 258 61 39 chr12 108944092 108944403 -12313127 - Lx9 LINE L1 0 7644 7327 7 1416 368 274 0 0 chr12 108944416 108944522 -12313008 + Lx9 LINE L1 7050 7155 -489 7 1416 317 329 265 43 chr12 108944641 108944925 -12312605 - MLT1A LTR MaLR -41 349 3 7 1416 870 237 162 29 chr12 108945462 108945770 -12311760 - ORR1E LTR MaLR -2 357 9 7 1416 228 330 29 20 chr12 108946065 108946167 -12311363 - ORR1E LTR MaLR -256 103 1 7 1416 447 322 89 5 chr12 108946178 108946407 -12311123 - L1M4 LINE L1 -454 5720 5482 7 1416 240 35 0 0 chr12 108947498 108947527 -12310003 + (TAA)n Simple_repeat Simple_repeat 1 29 0 7 1416 187 311 100 36 chr12 108947582 108947722 -12309808 - MIRc SINE MIR -19 249 101 7 1416 240 167 0 0 chr12 108949107 108949155 -12308375 + GA-rich Low_complexity Low_complexity 3 50 0 7 1416 183 80 0 0 chr12 108949977 108950002 -12307528 + (CAA)n Simple_repeat Simple_repeat 3 27 0 7 1416 624 199 26 130 chr12 108951124 108951355 -12306175 - Tigger7 DNA MER2_type -10 2481 2275 7 1416 282 283 10 29 chr12 108951383 108951485 -12306045 - Tigger7 DNA MER2_type -2375 116 17 7 1416 181 329 35 0 chr12 108952131 108952216 -12305314 + L2b LINE L2 3272 3359 -16 7 1416 505 273 56 7 chr12 108952291 108952435 -12305095 - RSINE1 SINE B4 -9 156 6 7 1416 414 242 113 16 chr12 108952537 108952722 -12304808 + L1M2 LINE L1 5124 5326 -817 7 1416 591 271 44 48 chr12 108953072 108953301 -12304229 + B4A SINE B4 1 228 -64 7 1416 232 222 27 18 chr12 108953322 108953432 -12304098 + (TG)n Simple_repeat Simple_repeat 1 111 0 7 1416 527 237 21 4 chr12 108953518 108953758 -12303772 + (CA)n Simple_repeat Simple_repeat 1 244 0 7 1416 369 192 14 0 chr12 108953768 108953841 -12303689 + HAL1-3A_ME LINE L1 1976 2049 -809 7 1416 206 203 156 0 chr12 108954634 108954698 -12302832 - MIR SINE MIR -107 155 82 7 1416 653 36 12 0 chr12 108955282 108955366 -12302164 + (TC)n Simple_repeat Simple_repeat 2 86 0 7 1416 774 97 11 39 chr12 108955374 108955556 -12301974 + (TG)n Simple_repeat Simple_repeat 1 177 0 7 1416 265 151 46 11 chr12 108955567 108955654 -12301876 + (TG)n Simple_repeat Simple_repeat 1 90 0 7 1416 505 287 122 15 chr12 108955737 108955942 -12301588 - B4A SINE B4 -57 235 9 7 1416 638 130 9 0 chr12 108958329 108958437 -12299093 + (TGGA)n Simple_repeat Simple_repeat 1 109 0 7 1416 1556 170 84 25 chr12 108958448 108958768 -12298762 + ORR1C1 LTR MaLR 1 339 -39 7 1416 393 88 18 0 chr12 108958817 108958874 -12298656 + ORR1C1 LTR MaLR 321 378 0 7 1416 800 128 8 0 chr12 108958879 108959012 -12298518 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 7 1416 180 77 0 0 chr12 108959612 108959638 -12297892 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1416 309 51 0 0 chr12 108959638 108959677 -12297853 + (CCA)n Simple_repeat Simple_repeat 3 41 0 7 1416 594 205 66 0 chr12 108959981 108960103 -12297427 + RSINE1 SINE B4 2 131 -34 7 1416 22 0 0 0 chr12 108960121 108960143 -12297387 + AT_rich Low_complexity Low_complexity 1 22 0 7 1416 204 204 20 0 chr12 108960338 108960387 -12297143 + MIR SINE MIR 81 130 -78 7 1416 588 310 16 15 chr12 108962990 108963243 -12294287 + L1MA4 LINE L1 5707 5949 -231 7 1416 456 19 0 0 chr12 108963243 108963296 -12294234 + (TATG)n Simple_repeat Simple_repeat 2 54 0 7 1416 362 325 32 56 chr12 108963296 108963326 -12294204 + L1MA4 LINE L1 5950 5982 -198 7 1416 234 0 0 0 chr12 108963640 108963666 -12293864 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1416 1084 68 0 7 chr12 108963666 108963803 -12293727 - B1_Mm SINE Alu -9 138 2 7 1416 551 350 84 18 chr12 108964172 108964446 -12293084 + B4A SINE B4 1 292 0 7 1416 249 146 0 0 chr12 108964589 108964637 -12292893 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 7 1416 811 214 9 75 chr12 108964650 108964862 -12292668 + B3A SINE B2 1 198 0 7 1416 266 246 0 0 chr12 108965052 108965109 -12292421 + HAL1 LINE L1 1577 1633 -874 7 1416 444 123 0 0 chr12 108965706 108965779 -12291751 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1416 352 322 64 96 chr12 108965818 108966038 -12291492 + HAL1 LINE L1 2234 2446 -61 7 1416 300 289 137 27 chr12 108966047 108966193 -12291337 + RSINE1 SINE B4 2 163 -2 7 1416 688 226 145 0 chr12 108966330 108966516 -12291014 + B3 SINE B2 1 213 -3 7 1416 28 0 0 0 chr12 108966517 108966545 -12290985 + AT_rich Low_complexity Low_complexity 1 28 0 7 1416 508 312 10 16 chr12 108967270 108967462 -12290068 + MIR3 SINE MIR 17 207 -1 7 1416 303 233 54 14 chr12 108968362 108968446 -12289084 - MTEb LTR MaLR -24 355 269 7 1416 293 378 27 22 chr12 108969176 108969360 -12288170 - MLT1I LTR MaLR -152 259 75 7 1416 189 0 0 0 chr12 108969606 108969627 -12287903 + (TA)n Simple_repeat Simple_repeat 1 21 0 7 1416 238 253 12 38 chr12 108971460 108971620 -12285910 + GA-rich Low_complexity Low_complexity 3 158 0 7 1416 735 171 32 19 chr12 108971658 108971962 -12285568 + GA-rich Low_complexity Low_complexity 1 307 0 7 1416 653 171 24 0 chr12 108973406 108973576 -12283954 + (CA)n Simple_repeat Simple_repeat 2 175 0 7 1416 1912 168 31 74 chr12 108975336 108975754 -12281776 - RMER19B LTR ERVK -502 400 1 7 1416 407 289 6 29 chr12 108976570 108976733 -12280797 + Lx7 LINE L1 5078 5262 -881 7 1416 585 215 55 40 chr12 108976730 108976929 -12280601 + Lx7 LINE L1 5620 5846 -1850 7 1416 1059 290 68 62 chr12 108977511 108978027 -12279503 - RMER13A LTR ERVK -237 669 2 7 1416 1347 323 117 20 chr12 108978043 108978652 -12278878 + Lx8 LINE L1 6289 6956 -517 7 1416 372 198 143 0 chr12 108978693 108978784 -12278746 + Lx8 LINE L1 7063 7166 -307 7 1416 715 291 102 32 chr12 108978786 108979130 -12278400 + ORR1D1 LTR MaLR 5 372 -2 7 1416 349 319 84 31 chr12 108979135 108979326 -12278204 + Lx8 LINE L1 7171 7371 -102 7 1416 1500 264 70 45 chr12 108979349 108979865 -12277665 - RLTR20B3 LTR ERVK -19 558 30 7 1416 202 271 21 0 chr12 108980106 108980154 -12277376 - MIRb SINE MIR -186 82 34 7 1416 974 252 50 11 chr12 108980224 108980505 -12277025 + B4A SINE B4 1 292 0 7 1416 836 149 17 6 chr12 108980524 108980699 -12276831 + (CA)n Simple_repeat Simple_repeat 1 177 0 7 1416 422 129 12 0 chr12 108984610 108984695 -12272835 + (CATA)n Simple_repeat Simple_repeat 1 86 0 7 1416 314 288 16 0 chr12 108984707 108984832 -12272698 + (CA)n Simple_repeat Simple_repeat 2 128 0 7 1416 234 235 13 7 chr12 108984845 108984995 -12272535 + (CA)n Simple_repeat Simple_repeat 2 152 0 7 1416 484 269 60 103 chr12 108985415 108985717 -12271813 + B4A SINE B4 4 292 0 7 1416 665 199 0 6 chr12 108985717 108985879 -12271651 + (CA)n Simple_repeat Simple_repeat 1 161 0 7 1416 377 233 9 0 chr12 108985906 108986022 -12271508 + (CATA)n Simple_repeat Simple_repeat 2 118 0 7 1416 198 0 0 0 chr12 108986241 108986263 -12271267 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1416 396 0 0 0 chr12 108986722 108986766 -12270764 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1416 407 307 68 87 chr12 108987382 108987692 -12269838 + MER121 Unknown Unknown 87 390 -22 7 1416 510 124 0 87 chr12 108989637 108989752 -12267778 + RMER17C-int LTR ERVK 463 567 -2671 7 1416 430 222 101 34 chr12 108989771 108989920 -12267610 + RMER17C-int LTR ERVK 112 270 -2968 7 1416 333 155 0 0 chr12 108990145 108990203 -12267327 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1416 403 203 0 0 chr12 108992395 108992464 -12265066 + ID4_ SINE ID 2 70 -13 7 1416 1860 191 52 13 chr12 108993000 108993387 -12264143 - MTD LTR MaLR -12 407 6 7 1416 325 274 25 4 chr12 108995395 108995511 -12262019 - MIR SINE MIR -76 186 71 7 1416 221 336 36 51 chr12 108995973 108996111 -12261419 - MIRb SINE MIR -131 137 2 7 1416 21 0 0 0 chr12 108997173 108997194 -12260336 + GC_rich Low_complexity Low_complexity 1 21 0 7 1416 1902 147 32 15 chr12 108997939 108998341 -12259189 - RMER17C LTR ERVK 0 410 2 8 1416 944 272 10 28 chr12 108999586 108999877 -12257653 + B4 SINE B4 5 290 -2 8 1416 489 115 0 0 chr12 108999884 108999962 -12257568 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 1416 1131 83 0 0 chr12 109000011 109000167 -12257363 + (GGAA)n Simple_repeat Simple_repeat 4 159 0 1 1416 569 275 43 48 chr12 109000833 109001020 -12256510 + MTE2b LTR MaLR 1 186 -193 2 1416 911 281 39 56 chr12 109001260 109001546 -12255984 - MTE2a LTR MaLR -96 283 3 3 1416 247 270 121 45 chr12 109001804 109002002 -12255528 + Lx8 LINE L1 7261 7473 0 4 1416 5111 230 43 80 chr12 109004376 109006653 -12250877 + L1_Mur3 LINE L1 855 3062 -2818 5 1416 978 98 91 70 chr12 109006659 109006845 -12250685 + B2_Mm2 SINE B2 2 191 -4 6 1416 238 280 258 0 chr12 109007058 109007151 -12250379 + PB1D10 SINE Alu 1 117 0 7 1416 282 29 0 0 chr12 109007178 109007213 -12250317 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1416 557 40 27 0 chr12 109009802 109009877 -12247653 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 9 1416 720 111 0 0 chr12 109009887 109009995 -12247535 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 1416 1732 188 81 22 chr12 109009995 109010356 -12247174 + MTD LTR MaLR 22 405 -14 1 1416 757 251 78 0 chr12 109010447 109010614 -12246916 + B3A SINE B2 3 182 -16 1 1416 650 211 6 0 chr12 109010670 109010845 -12246685 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1416 730 301 44 0 chr12 109010892 109011141 -12246389 - MLT1A1-int LTR MaLR -1446 289 30 1 1416 397 238 77 26 chr12 109011155 109011335 -12246195 - MLT1A1 LTR MaLR -12 396 239 1 1416 540 291 99 31 chr12 109011340 109011663 -12245867 + Lx9 LINE L1 6983 7327 -317 1 1416 710 310 71 0 chr12 109011758 109011955 -12245575 + B4A SINE B4 58 268 -24 1 1416 453 122 0 0 chr12 109011955 109012029 -12245501 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1416 350 274 118 0 chr12 109012144 109012246 -12245284 - MLT1A1 LTR MaLR -227 138 25 1 1416 2611 143 12 14 chr12 109012259 109012677 -12244853 - MTC LTR MaLR -2 419 3 1 1416 421 340 27 20 chr12 109013132 109013279 -12244251 + MLT1J-int LTR MaLR 1084 1231 -156 1 1416 314 306 89 63 chr12 109013272 109013509 -12244021 + MLT1J-int LTR MaLR 195 437 -950 2 1416 250 261 15 0 chr12 109013592 109013657 -12243873 + Lx8 LINE L1 7217 7282 -191 2 1416 1792 198 103 21 chr12 109013849 109014236 -12243294 - MTD LTR MaLR 0 419 1 2 1416 396 298 94 49 chr12 109014536 109014822 -12242708 + L1M4 LINE L1 5039 5337 -809 2 1416 1208 221 151 9 chr12 109014867 109015247 -12242283 + RMER16 LTR ERVK 5 533 0 2 1416 597 40 0 0 chr12 109015307 109015383 -12242147 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1416 824 308 5 0 chr12 109015822 109016043 -12241487 + ID_B1 SINE B4 1 222 -2 2 1416 222 136 0 0 chr12 109016649 109016693 -12240837 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1416 820 266 52 48 chr12 109017151 109017380 -12240150 + B4 SINE B4 45 274 -18 2 1416 603 40 0 0 chr12 109017381 109017455 -12240075 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1416 231 321 12 23 chr12 109018125 109018211 -12239319 + MLT1L LTR MaLR 182 266 -344 3 1416 511 51 39 0 chr12 109018373 109018451 -12239079 + (CATA)n Simple_repeat Simple_repeat 4 84 0 3 1416 590 293 62 0 chr12 109018647 109018855 -12238675 - ID_B1 SINE B4 -2 222 2 3 1416 210 91 0 0 chr12 109018977 109019010 -12238520 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1416 322 267 39 29 chr12 109019509 109019613 -12237917 - MIRb SINE MIR -40 228 124 3 1416 1170 141 95 19 chr12 109019878 109020088 -12237442 - URR1A DNA MER1_type 0 226 1 3 1416 226 333 0 0 chr12 109020140 109020224 -12237306 + MIR SINE MIR 42 125 -83 3 1416 517 184 0 12 chr12 109020581 109020746 -12236784 + (TG)n Simple_repeat Simple_repeat 2 164 0 3 1416 331 188 0 18 chr12 109020765 109020879 -12236651 + (TG)n Simple_repeat Simple_repeat 1 112 0 3 1416 546 189 0 16 chr12 109020936 109021119 -12236411 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1416 410 87 0 55 chr12 109021155 109021166 -12236364 + (GA)n Simple_repeat Simple_repeat 1 10 0 3 1416 392 37 19 0 chr12 109021166 109021220 -12236310 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1416 410 87 0 55 chr12 109021220 109021281 -12236249 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1416 447 189 15 8 chr12 109021601 109021734 -12235796 + (CA)n Simple_repeat Simple_repeat 2 135 0 4 1416 222 91 0 0 chr12 109021793 109021826 -12235704 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1416 381 330 56 28 chr12 109022448 109022626 -12234904 - MER45R DNA Tip100 -1398 183 1 4 1416 461 248 96 44 chr12 109023114 109023249 -12234281 - RSINE1 SINE B4 -13 152 11 4 1416 324 331 76 15 chr12 109024210 109024342 -12233188 - MLT1A1 LTR MaLR -1 407 268 4 1416 504 0 0 0 chr12 109026276 109026332 -12231198 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 1416 974 274 45 19 chr12 109026453 109026766 -12230764 - Charlie4a DNA MER1_type 0 508 188 4 1416 744 251 56 68 chr12 109027100 109027352 -12230178 + B4A SINE B4 1 249 -43 4 1416 557 265 5 95 chr12 109027355 109027555 -12229975 + B4A SINE B4 89 270 -22 4 1416 228 100 0 0 chr12 109027560 109027600 -12229930 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 4 1416 805 171 11 0 chr12 109027671 109027846 -12229684 + CT-rich Low_complexity Low_complexity 2 178 0 5 1416 769 306 0 20 chr12 109028549 109028752 -12228778 - ID_B1 SINE B4 -2 222 24 5 1416 279 286 78 0 chr12 109028691 109028768 -12228762 - ID4 SINE ID 0 83 1 5 1416 339 250 12 23 chr12 109030213 109030299 -12227231 + PB1D10 SINE Alu 2 86 -31 5 1416 822 276 39 10 chr12 109030322 109030527 -12227003 + ID_B1 SINE B4 12 222 -2 5 1416 1516 240 111 28 chr12 109030698 109031165 -12226365 + RMER20A LTR ERVK 11 516 0 5 1416 395 283 35 19 chr12 109031657 109031781 -12225749 - ORR1E LTR MaLR -243 127 11 5 1416 234 230 10 103 chr12 109032343 109032403 -12225127 + B3 SINE B2 129 187 -29 5 1416 378 0 0 0 chr12 109032403 109032445 -12225085 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1416 234 230 10 103 chr12 109032445 109032481 -12225049 + B3 SINE B2 188 216 0 5 1416 939 344 37 48 chr12 109032675 109033109 -12224421 - MER77 LTR ERVL -4 603 175 5 1416 389 324 0 62 chr12 109033085 109033230 -12224300 + MLT1A0 LTR MaLR 229 364 -1 6 1416 423 0 0 0 chr12 109033318 109033365 -12224165 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1416 359 216 0 9 chr12 109033365 109033477 -12224053 + (CA)n Simple_repeat Simple_repeat 2 112 0 6 1416 317 51 0 0 chr12 109033483 109033522 -12224008 + HAL1-3A_ME LINE L1 1978 2016 -842 6 1416 238 305 51 148 chr12 109033819 109034015 -12223515 - MLT1G3 LTR MaLR -196 399 223 6 1416 670 281 0 0 chr12 109035618 109035764 -12221766 + B1F2 SINE Alu 4 149 0 6 1416 928 185 126 34 chr12 109036299 109036506 -12221024 - URR1A DNA MER1_type 0 226 1 6 1416 201 284 35 47 chr12 109038101 109038186 -12219344 - MIRc SINE MIR -141 127 44 6 1416 358 280 136 93 chr12 109039641 109039964 -12217566 - ORR1E LTR MaLR -2 357 21 6 1416 648 212 76 0 chr12 109040015 109040147 -12217383 - MTD LTR MaLR -273 146 5 6 1416 465 214 226 54 chr12 109040208 109040376 -12217154 - B3A SINE B2 -1 197 1 7 1416 591 292 44 0 chr12 109040708 109040845 -12216685 + RSINE1 SINE B4 3 145 -20 7 1416 612 73 0 0 chr12 109041828 109041910 -12215620 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1416 324 119 0 61 chr12 109041920 109042018 -12215512 + (CAGAGA)n Simple_repeat Simple_repeat 5 96 0 7 1416 498 114 0 0 chr12 109042019 109042098 -12215432 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1416 1174 75 0 0 chr12 109042191 109042337 -12215193 + B1_Mus2 SINE Alu 2 147 0 7 1416 1442 230 40 93 chr12 109042666 109042704 -12214826 - ORR1D2 LTR MaLR -4 366 336 7 1416 2644 74 25 6 chr12 109042704 109043057 -12214473 + L1Md_F2 LINE L1 6208 6567 -15 7 1416 1442 230 40 93 chr12 109043057 109043396 -12214134 - ORR1D2 LTR MaLR -35 335 9 7 1416 1140 252 189 0 chr12 109043544 109043857 -12213673 + MTE2b LTR MaLR 3 374 -5 7 1416 253 309 44 0 chr12 109043977 109044045 -12213485 + B4A SINE B4 1 71 -221 7 1416 692 228 152 25 chr12 109045217 109045415 -12212115 + B4A SINE B4 22 244 -48 8 1416 520 266 49 55 chr12 109045428 109045591 -12211939 + RSINE1 SINE B4 4 165 0 8 1416 865 271 59 0 chr12 109046979 109047252 -12210278 + L1MB3 LINE L1 5614 5902 -281 8 1416 811 261 41 83 chr12 109048630 109048872 -12208658 - B4A SINE B4 -60 232 1 8 1416 270 0 0 0 chr12 109050202 109050232 -12207298 + (TC)n Simple_repeat Simple_repeat 1 30 0 8 1416 378 0 0 0 chr12 109050232 109050273 -12207257 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1416 201 268 72 12 chr12 109050426 109050509 -12207021 - MIRb SINE MIR -15 253 166 8 1416 184 209 23 0 chr12 109050608 109050651 -12206879 - MIRc SINE MIR -105 163 120 8 1416 205 261 321 9 chr12 109050621 109050733 -12206797 - MIRb SINE MIR -116 152 6 8 2 1031 276 148 18 chr12 109051577 109051909 -12205621 + MTE2b LTR MaLR 1 375 -4 8 1417 190 354 88 30 chr12 109051970 109052232 -12205298 - L2a LINE L2 -58 3368 3092 8 1417 739 252 52 75 chr12 109053004 109053342 -12204188 + MTE2a LTR MaLR 1 379 0 9 1417 3413 64 27 2 chr12 109053550 109053989 -12203541 + L1_Mus4 LINE L1 6181 6630 -6 9 1417 31 0 0 0 chr12 109054597 109054628 -12202902 + AT_rich Low_complexity Low_complexity 1 31 0 9 1417 846 282 83 62 chr12 109054731 109054796 -12202734 + MER2 DNA MER2_type 1 64 -281 9 1417 1740 152 125 14 chr12 109054796 109055149 -12202381 + ORR1B1 LTR MaLR 3 394 0 9 1417 846 282 83 62 chr12 109055149 109055420 -12202110 + MER2 DNA MER2_type 65 344 -1 9 1417 473 261 14 97 chr12 109055450 109055594 -12201936 + RSINE1 SINE B4 34 165 0 9 1417 24 32 0 0 chr12 109055606 109055637 -12201893 + AT_rich Low_complexity Low_complexity 1 31 0 9 1417 315 262 99 12 chr12 109056108 109056189 -12201341 + RSINE1 SINE B4 47 134 -31 9 1417 894 137 0 0 chr12 109056196 109056342 -12201188 + (TGGA)n Simple_repeat Simple_repeat 3 148 0 9 1417 2259 85 24 51 chr12 109057277 109057613 -12199917 + ORR1A2 LTR MaLR 1 327 0 9 1417 279 203 0 0 chr12 109057657 109057726 -12199804 + (AGTTG)n Simple_repeat Simple_repeat 3 71 0 1 1417 504 0 0 0 chr12 109058212 109058268 -12199262 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1417 236 346 15 30 chr12 109058573 109058704 -12198826 - MIR SINE MIR -56 206 78 1 1417 269 225 42 0 chr12 109058773 109058844 -12198686 + MLT1I LTR MaLR 60 133 -278 1 1417 243 325 47 47 chr12 109058942 109059071 -12198459 + MLT1I LTR MaLR 316 444 -4 1 1417 293 296 27 9 chr12 109059620 109059964 -12197566 + (TCCA)n Simple_repeat Simple_repeat 1 350 0 1 1417 298 310 25 17 chr12 109059856 109059974 -12197556 + (CCCA)n Simple_repeat Simple_repeat 2 120 0 1 1417 2328 141 34 21 chr12 109059984 109060367 -12197163 + MTC LTR MaLR 33 420 -1 1 1417 189 279 0 0 chr12 109060372 109060451 -12197079 + (TCCA)n Simple_repeat Simple_repeat 1 79 0 1 1417 2561 127 18 0 chr12 109061509 109061894 -12195636 + ORR1B1 LTR MaLR 3 394 0 1 1417 424 0 18 18 chr12 109064640 109064697 -12192833 + (TTTTTG)n Simple_repeat Simple_repeat 3 59 0 1 1417 234 0 0 0 chr12 109064913 109064939 -12192591 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1417 1077 89 0 0 chr12 109064939 109065106 -12192424 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 1417 417 292 10 0 chr12 109065637 109065733 -12191797 - PB1D10 SINE Alu -9 108 12 1 1417 189 0 0 0 chr12 109065800 109065821 -12191709 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 1 1417 207 299 0 17 chr12 109067341 109067416 -12190114 + MIRc SINE MIR 59 133 -135 1 1417 1128 126 141 5 chr12 109067853 109068052 -12189478 + URR1A DNA MER1_type 1 226 0 1 1417 422 344 0 27 chr12 109069411 109069596 -12187934 + GA-rich Low_complexity Low_complexity 1 180 0 1 1417 231 167 0 0 chr12 109069668 109069710 -12187820 + G-rich Low_complexity Low_complexity 1 42 0 1 1417 830 276 53 96 chr12 109071203 109071600 -12185930 - MTE2b LTR MaLR 0 379 1 1 1417 343 271 160 51 chr12 109072096 109072271 -12185259 - RMER30 DNA MER1_type -1 201 8 1 1417 234 91 0 0 chr12 109072922 109072955 -12184575 + (CCCTG)n Simple_repeat Simple_repeat 2 34 0 1 1417 554 264 54 134 chr12 109073118 109073394 -12184136 + MLT1B LTR MaLR 59 312 -78 1 1417 478 133 11 11 chr12 109073774 109073865 -12183665 + CT-rich Low_complexity Low_complexity 1 91 0 1 1417 202 333 76 55 chr12 109074771 109074962 -12182568 - MIRc SINE MIR -39 229 31 1 1417 998 253 98 27 chr12 109075400 109075697 -12181833 - MTD LTR MaLR -101 318 1 1 1417 1320 236 73 26 chr12 109077219 109077562 -12179968 - ORR1E LTR MaLR 0 359 1 1 1417 251 283 0 36 chr12 109077742 109077852 -12179678 + (CCCCAG)n Simple_repeat Simple_repeat 2 107 0 1 1417 1154 198 128 36 chr12 109078012 109078316 -12179214 + IAPEY3_LTR LTR ERVK 1 332 0 1 1417 357 301 47 40 chr12 109079456 109079605 -12177925 - MIRb SINE MIR -45 223 74 1 1417 269 324 101 20 chr12 109080314 109080462 -12177068 + Lx8 LINE L1 6722 6881 -592 1 1417 353 186 76 88 chr12 109080760 109081007 -12176523 + HAL1-2a_MD LINE L1 2323 2517 -507 1 1417 3495 18 5 5 chr12 109081335 109081731 -12175799 + MTA_Mm LTR MaLR 1 396 0 1 1417 355 241 126 0 chr12 109082130 109082217 -12175313 + MLT1G3 LTR MaLR 268 365 -230 1 1417 1084 168 15 25 chr12 109082326 109082527 -12175003 + URR1A DNA MER1_type 1 199 -27 1 1417 214 289 10 91 chr12 109083292 109083391 -12174139 + MIRb SINE MIR 1 91 -177 1 1417 273 29 0 0 chr12 109083825 109083859 -12173671 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1417 212 333 0 14 chr12 109083905 109083978 -12173552 + (CATA)n Simple_repeat Simple_repeat 2 73 0 1 1417 833 299 144 46 chr12 109084316 109084880 -12172650 + L1MEg LINE L1 360 951 -5133 1 1417 570 29 0 0 chr12 109084880 109084948 -12172582 + (GGA)n Simple_repeat Simple_repeat 3 70 0 1 1417 833 299 144 46 chr12 109084948 109085337 -12172193 + L1MEg LINE L1 952 1406 -4678 1 1417 1020 156 0 0 chr12 109085588 109085826 -12171704 + GA-rich Low_complexity Low_complexity 1 238 0 1 1417 621 216 36 29 chr12 109085835 109085973 -12171557 + RSINE1 SINE B4 3 141 -24 1 1417 411 73 0 0 chr12 109085975 109086030 -12171500 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1417 749 349 151 23 chr12 109086102 109086764 -12170766 + Charlie1a DNA MER1_type 57 802 -653 1 1417 837 161 0 0 chr12 109087059 109087208 -12170322 + CT-rich Low_complexity Low_complexity 2 150 0 1 1417 318 388 0 0 chr12 109087915 109088075 -12169455 + (CA)n Simple_repeat Simple_repeat 1 160 0 1 1417 330 26 0 0 chr12 109088271 109088310 -12169220 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1417 522 0 0 0 chr12 109088557 109088615 -12168915 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1417 345 325 17 9 chr12 109090579 109090694 -12166836 + PB1D7 SINE Alu 4 119 -1 1 1417 225 210 132 24 chr12 109090961 109091044 -12166486 + L1MB4 LINE L1 5965 6056 -124 1 1417 184 205 0 49 chr12 109091778 109091819 -12165711 + L2 LINE L2 1973 2011 -1408 1 1417 234 293 151 12 chr12 109093126 109093292 -12164238 + L1M5 LINE L1 5614 5802 -377 1 1417 758 259 66 28 chr12 109093294 109093612 -12163918 + L1MB8 LINE L1 5843 6172 -6 1 1417 341 202 72 31 chr12 109093653 109093750 -12163780 - MIRb SINE MIR -73 195 95 1 1417 222 37 0 0 chr12 109095687 109095714 -12161816 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1417 431 264 0 16 chr12 109095714 109095963 -12161567 + (TA)n Simple_repeat Simple_repeat 1 244 0 1 1417 180 0 0 0 chr12 109096274 109096294 -12161236 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1417 974 259 66 18 chr12 109096300 109096572 -12160958 + B4 SINE B4 1 285 -7 1 1417 351 256 0 0 chr12 109096653 109096786 -12160744 + (CA)n Simple_repeat Simple_repeat 1 133 0 1 1417 213 132 0 0 chr12 109097592 109097630 -12159900 + (TCCCC)n Simple_repeat Simple_repeat 1 38 0 1 1417 771 138 23 17 chr12 109098319 109098496 -12159034 + GA-rich Low_complexity Low_complexity 2 179 0 1 1417 181 83 56 0 chr12 109098496 109098532 -12158998 + (GGA)n Simple_repeat Simple_repeat 1 38 0 1 1417 3447 30 5 0 chr12 109099419 109099813 -12157717 + MTA_Mm LTR MaLR 1 396 0 1 1417 540 310 149 4 chr12 109100280 109100549 -12156981 + MER2 DNA MER2_type 33 340 -5 1 1417 374 319 94 9 chr12 109100638 109100958 -12156572 - L1M5 LINE L1 -1909 4237 3891 1 1417 3321 51 2 2 chr12 109100999 109101395 -12156135 + MTA_Mm LTR MaLR 1 396 0 1 1417 344 307 172 22 chr12 109101483 109101663 -12155867 - L1MD LINE L1 -2415 3731 3525 1 1417 1013 225 19 9 chr12 109101779 109101990 -12155540 + B3 SINE B2 4 216 0 1 1417 281 320 72 24 chr12 109102130 109102255 -12155275 - ID_B1 SINE B4 -2 222 92 1 1417 249 253 97 65 chr12 109102548 109102641 -12154889 - PB1D10 SINE Alu -1 116 21 1 1417 215 228 158 0 chr12 109102896 109102953 -12154577 - PB1D10 SINE Alu -31 86 21 1 1417 243 264 139 0 chr12 109103364 109103436 -12154094 - PB1D10 SINE Alu -31 86 5 1 1417 395 276 190 15 chr12 109103437 109103632 -12153898 - L1M5 LINE L1 -3075 3071 2843 1 1417 427 167 28 28 chr12 109103642 109103821 -12153709 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1417 486 376 68 61 chr12 109103828 109104547 -12152983 - L1MEe LINE L1 -3197 2949 2234 1 1417 4472 14 0 0 chr12 109104547 109105041 -12152489 + L1Md_A LINE L1 6088 6581 -1 1 1417 486 295 88 19 chr12 109105041 109105203 -12152327 - L1MEe LINE L1 -3913 2233 2053 1 1417 186 143 0 0 chr12 109105322 109105357 -12152173 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1417 888 106 59 22 chr12 109105360 109105495 -12152035 - B1_Mus1 SINE Alu -7 141 2 1 1417 477 321 34 34 chr12 109105504 109105884 -12151646 - L1MEe LINE L1 -4552 1690 1311 1 1417 477 0 0 0 chr12 109105941 109105994 -12151536 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1417 379 210 32 0 chr12 109106310 109106401 -12151129 - PB1D10 SINE Alu 0 120 25 1 1417 1673 170 173 19 chr12 109106516 109106879 -12150651 - MTC LTR MaLR 0 419 1 1 1417 523 252 99 0 chr12 109106994 109107125 -12150405 - B1F2 SINE Alu -5 144 1 1 1417 320 225 28 0 chr12 109107508 109107579 -12149951 - MER45A DNA Tip100 -47 131 59 1 1417 5805 144 20 21 chr12 109107653 109108612 -12148918 - RMER17B LTR ERVK 0 958 1 1 1417 322 185 0 24 chr12 109108646 109108678 -12148852 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1417 985 63 34 22 chr12 109108678 109108856 -12148674 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 1 1417 322 185 0 24 chr12 109108856 109108906 -12148624 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1417 767 234 48 74 chr12 109108906 109108923 -12148607 - MT2A LTR ERVL -40 561 546 1 1417 438 108 0 0 chr12 109108923 109108988 -12148542 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1417 1034 193 171 57 chr12 109108988 109109352 -12148178 - MT2A LTR ERVL -56 545 2 1 1417 1553 255 85 15 chr12 109109520 109109910 -12147620 + MTD LTR MaLR 1 417 -2 1 1417 382 352 165 5 chr12 109110989 109111183 -12146347 - MER97c DNA MER1_type? -529 561 337 1 1417 412 284 6 4 chr12 109111502 109111605 -12145925 + B4 SINE B4 6 110 -55 1 1417 384 287 26 17 chr12 109111649 109111766 -12145764 + B4A SINE B4 97 214 -78 1 1417 278 161 0 22 chr12 109111766 109111830 -12145700 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1417 627 51 0 0 chr12 109111830 109111909 -12145621 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 1 1417 1961 102 31 22 chr12 109111909 109112228 -12145302 - RLTRETN_Mm LTR ERVK 0 322 1 1 1417 278 161 0 22 chr12 109112228 109112251 -12145279 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1417 247 143 0 164 chr12 109112265 109112332 -12145198 + B4A SINE B4 237 292 0 1 1417 401 254 69 4 chr12 109113252 109113398 -12144132 - MIR SINE MIR -65 203 50 1 1417 198 0 0 0 chr12 109113898 109113920 -12143610 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1417 1442 297 8 19 chr12 109115111 109115485 -12142045 - MTEa LTR MaLR -9 370 1 1 1417 352 200 67 0 chr12 109115572 109115647 -12141883 - PB1D10 SINE Alu -7 110 31 1 1417 225 0 0 0 chr12 109116380 109116405 -12141125 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1 1417 435 302 6 23 chr12 109116511 109116687 -12140843 + (TTGG)n Simple_repeat Simple_repeat 2 174 0 2 1417 198 71 0 0 chr12 109116688 109116716 -12140814 + (GCTG)n Simple_repeat Simple_repeat 1 28 0 2 1417 1157 98 13 19 chr12 109118189 109118501 -12139029 + (GTGTG)n Simple_repeat Simple_repeat 1 309 0 2 1417 534 185 0 22 chr12 109120482 109120664 -12136866 + CT-rich Low_complexity Low_complexity 2 179 0 2 1417 473 187 0 18 chr12 109120780 109120949 -12136581 + (TCTCTG)n Simple_repeat Simple_repeat 5 170 0 2 1417 244 148 33 0 chr12 109121015 109121076 -12136454 + CT-rich Low_complexity Low_complexity 2 64 0 2 1417 2144 91 32 0 chr12 109121122 109121430 -12136100 + ORR1A2 LTR MaLR 2 319 -8 2 1417 4808 156 26 7 chr12 109121434 109122351 -12135179 + ORR1A2-int LTR MaLR 1 935 -857 2 1417 453 215 136 15 chr12 109123121 109123253 -12134277 + B1F1 SINE Alu 2 149 0 2 1417 33 97 0 0 chr12 109123255 109123358 -12134172 + AT_rich Low_complexity Low_complexity 1 103 0 2 1417 228 250 0 0 chr12 109123377 109123425 -12134105 - MIR SINE MIR -142 120 73 2 1417 247 207 22 22 chr12 109123433 109123522 -12134008 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 1417 386 297 34 8 chr12 109123654 109123773 -12133757 + L3 LINE CR1 4279 4400 -89 2 1417 225 0 0 0 chr12 109126363 109126388 -12131142 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1417 1516 49 22 0 chr12 109129252 109129437 -12128093 - B2_Mm1t SINE B2 -3 190 2 2 1417 318 98 0 0 chr12 109130524 109130575 -12126955 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1417 1190 224 81 45 chr12 109130578 109130635 -12126895 - MTD LTR MaLR -2 417 360 2 1417 2525 166 5 24 chr12 109130635 109131061 -12126469 + MTC LTR MaLR 1 418 -3 2 1417 1190 232 79 43 chr12 109131061 109131368 -12126162 - MTD LTR MaLR -60 359 11 2 1417 258 349 12 0 chr12 109131484 109131567 -12125963 - MTEb LTR MaLR -15 364 281 2 1417 216 286 138 32 chr12 109132245 109132368 -12125162 + B1F SINE Alu 1 136 -13 2 1417 231 336 18 26 chr12 109132573 109132686 -12124844 + L4 LINE RTE 1783 1894 -135 2 1417 201 39 0 0 chr12 109132686 109132712 -12124818 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1417 470 229 90 18 chr12 109132951 109133062 -12124468 - PB1D7 SINE Alu -1 119 1 2 1417 267 228 0 0 chr12 109133589 109133712 -12123818 + CT-rich Low_complexity Low_complexity 1 123 0 2 1417 526 293 66 24 chr12 109135129 109135342 -12122188 - L1ME1 LINE L1 -29 6150 5929 2 1417 520 342 71 44 chr12 109135392 109135943 -12121587 - L1ME1 LINE L1 -301 5863 5273 2 1417 316 315 171 17 chr12 109137780 109137961 -12119569 + MER3 DNA MER1_type 1 209 0 2 1417 305 279 11 44 chr12 109138009 109138099 -12119431 + MLT1J2 LTR MaLR 362 448 0 2 1417 303 311 166 15 chr12 109138104 109138303 -12119227 - MIR SINE MIR -13 249 21 2 1417 2247 110 109 8 chr12 109138607 109138965 -12118565 - ORR1B1 LTR MaLR 0 394 1 2 1417 313 289 183 36 chr12 109140715 109140807 -12116723 + B4A SINE B4 1 98 -194 2 1417 324 0 0 0 chr12 109140807 109140843 -12116687 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1417 313 289 183 36 chr12 109140843 109141001 -12116529 + B4A SINE B4 99 287 -5 2 1417 505 304 13 20 chr12 109141114 109141265 -12116265 + RMER30 DNA MER1_type 52 201 -1 2 1417 186 395 0 0 chr12 109141605 109141681 -12115849 - L4 LINE RTE -184 1845 1770 2 1417 424 276 52 0 chr12 109142158 109142274 -12115256 - MTEa LTR MaLR 0 379 258 2 1417 256 312 109 9 chr12 109142286 109142396 -12115134 - MTEa LTR MaLR -245 125 5 2 1417 186 159 49 3 chr12 109142740 109142784 -12114746 - MIRc SINE MIR -110 166 120 2 1417 1624 197 78 0 chr12 109143133 109143493 -12114037 - MTD LTR MaLR -14 405 18 2 1417 709 277 9 15 chr12 109143658 109143874 -12113656 - B3A SINE B2 0 216 8 2 1417 186 244 0 0 chr12 109144109 109144150 -12113380 + L4 LINE RTE 1777 1817 -212 2 1417 225 0 0 0 chr12 109144187 109144212 -12113318 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1417 1212 61 0 0 chr12 109144225 109144372 -12113158 - B1_Mus2 SINE Alu 0 147 1 2 1417 21 36 0 0 chr12 109145139 109145167 -12112363 + AT_rich Low_complexity Low_complexity 1 28 0 2 1417 240 247 0 0 chr12 109145570 109145655 -12111875 + (TGGG)n Simple_repeat Simple_repeat 1 85 0 2 1417 1344 67 0 0 chr12 109145655 109145835 -12111695 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2 1417 258 136 0 0 chr12 109147728 109147772 -12109758 + (GGGGA)n Simple_repeat Simple_repeat 5 48 0 2 1417 225 217 43 0 chr12 109147920 109148012 -12109518 + CT-rich Low_complexity Low_complexity 1 96 0 2 1417 346 306 57 16 chr12 109148027 109148150 -12109380 - B1_Mur1 SINE Alu -1 148 21 2 1417 665 178 19 6 chr12 109149823 109149981 -12107549 + GA-rich Low_complexity Low_complexity 2 161 0 2 1417 180 0 0 0 chr12 109151608 109151628 -12105902 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1417 201 108 0 0 chr12 109153395 109153432 -12104098 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1417 183 139 0 0 chr12 109154644 109154680 -12102850 + (TCC)n Simple_repeat Simple_repeat 2 37 0 2 1417 908 279 42 25 chr12 109157552 109157838 -12099692 - B4 SINE B4 0 292 2 2 1417 240 233 47 17 chr12 109157867 109157966 -12099564 + ID4_ SINE ID 15 113 -39 2 1417 465 19 0 0 chr12 109158218 109158272 -12099258 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1417 1066 234 9 23 chr12 109160556 109160775 -12096755 + B3 SINE B2 1 216 0 2 1417 21 0 0 0 chr12 109160781 109160802 -12096728 + AT_rich Low_complexity Low_complexity 1 21 0 2 1417 263 28 0 27 chr12 109160898 109160935 -12096595 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1417 344 320 0 10 chr12 109161163 109161261 -12096269 - MIRc SINE MIR -105 163 67 2 1417 225 353 73 29 chr12 109161279 109161416 -12096114 + MLT1-int LTR MaLR 606 748 -623 2 1417 369 0 0 0 chr12 109161853 109161894 -12095636 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1417 339 25 0 0 chr12 109161894 109161933 -12095597 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1417 984 262 13 76 chr12 109164944 109165162 -12092368 - B4 SINE B4 -9 283 81 2 1417 217 0 61 0 chr12 109165162 109165195 -12092335 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1417 984 262 13 76 chr12 109165195 109165278 -12092252 - B4 SINE B4 -212 80 1 2 1417 198 0 0 0 chr12 109167088 109167110 -12090420 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1417 189 180 0 0 chr12 109167140 109167190 -12090340 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1417 208 262 16 16 chr12 109167901 109167986 -12089544 + GA-rich Low_complexity Low_complexity 1 85 0 2 1417 438 254 75 60 chr12 109168034 109168168 -12089362 + B1F SINE Alu 13 148 -1 2 1417 290 271 145 35 chr12 109168469 109168641 -12088889 + MER20 DNA MER1_type 29 219 0 2 1417 444 62 0 0 chr12 109169713 109169777 -12087753 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1417 285 29 0 0 chr12 109170027 109170061 -12087469 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 2 1417 23 0 0 0 chr12 109170470 109170493 -12087037 + AT_rich Low_complexity Low_complexity 1 23 0 2 1417 1188 55 0 27 chr12 109171084 109171234 -12086296 + B1_Mus2 SINE Alu 2 147 0 2 1417 325 80 0 20 chr12 109176574 109176625 -12080905 - HAL1-3A_ME LINE L1 -833 2025 1976 2 1417 949 206 3 5 chr12 109176644 109177249 -12080281 + (TG)n Simple_repeat Simple_repeat 1 604 0 2 1417 281 276 83 41 chr12 109178708 109178829 -12078701 - MIRb SINE MIR -65 203 78 2 1417 839 133 207 37 chr12 109178895 109179083 -12078447 - URR1A DNA MER1_type -6 220 1 2 1417 416 19 19 0 chr12 109179434 109179487 -12078043 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1417 351 0 0 0 chr12 109179487 109179525 -12078005 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1417 745 277 153 14 chr12 109179582 109179857 -12077673 - MTEa LTR MaLR -62 317 5 2 1417 266 317 37 56 chr12 109182130 109182237 -12075293 - RMER30 DNA MER1_type -1 201 97 2 1417 914 147 0 59 chr12 109182237 109182389 -12075141 + B1_Mus2 SINE Alu 2 144 -3 2 1417 251 288 56 63 chr12 109182397 109182419 -12075111 - RMER30 DNA MER1_type -69 133 110 2 1417 180 0 0 0 chr12 109182419 109182439 -12075091 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1417 251 288 56 63 chr12 109182439 109182542 -12074988 - RMER30 DNA MER1_type -93 109 9 2 1418 230 0 33 0 chr12 109183202 109183232 -12074298 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1418 487 333 45 10 chr12 109183234 109183434 -12074096 - B4A SINE B4 -85 207 1 2 1418 1149 181 10 0 chr12 109183451 109183656 -12073874 - B3 SINE B2 0 216 10 2 1418 405 0 0 0 chr12 109183885 109183930 -12073600 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 2 1418 1197 42 0 14 chr12 109183930 109184069 -12073461 - B1_Mus1 SINE Alu -9 139 1 2 1418 245 146 0 20 chr12 109185341 109185390 -12072140 + CT-rich Low_complexity Low_complexity 1 48 0 2 1418 217 230 117 19 chr12 109186876 109186977 -12070553 - MIRc SINE MIR -129 139 28 2 1418 492 18 0 0 chr12 109187185 109187242 -12070288 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1418 369 0 0 0 chr12 109187242 109187282 -12070248 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1418 239 337 16 49 chr12 109187285 109187357 -12070173 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 2 1418 390 42 0 0 chr12 109187357 109187405 -12070125 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1418 239 337 16 49 chr12 109187405 109187516 -12070014 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 2 1418 238 289 22 104 chr12 109187867 109188002 -12069528 + MER121 Unknown Unknown 204 327 -85 2 1418 314 226 0 0 chr12 109191316 109191378 -12066152 + MIR SINE MIR 110 171 -91 2 1418 192 40 0 0 chr12 109191872 109191897 -12065633 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1418 189 0 0 0 chr12 109192530 109192551 -12064979 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1418 860 169 57 28 chr12 109193100 109193277 -12064253 - URR1B DNA MER1_type 0 225 44 2 1418 476 310 78 40 chr12 109193942 109193988 -12063542 + L1MB3 LINE L1 5551 5595 -588 2 1418 194 91 0 29 chr12 109193988 109194022 -12063508 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2 1418 476 310 78 40 chr12 109194022 109194271 -12063259 + L1MB3 LINE L1 5596 5857 -326 2 1418 252 0 0 0 chr12 109194275 109194303 -12063227 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1418 406 249 141 6 chr12 109194319 109194489 -12063041 + L1MB3 LINE L1 5914 6106 -77 2 1418 213 39 0 0 chr12 109194553 109194579 -12062951 + (TGG)n Simple_repeat Simple_repeat 2 27 0 3 1418 599 198 367 41 chr12 109194702 109194871 -12062659 + ID_B1 SINE B4 1 224 0 3 1418 1210 75 0 0 chr12 109195955 109196102 -12061428 + B1_Mus1 SINE Alu 2 148 0 3 1418 227 31 31 0 chr12 109196107 109196139 -12061391 + (GGAAA)n Simple_repeat Simple_repeat 3 35 0 3 1418 274 278 27 36 chr12 109197218 109197330 -12060200 - MIR SINE MIR -107 161 48 3 1418 560 283 21 139 chr12 109197725 109197963 -12059567 + ID_B1 SINE B4 12 221 -3 3 1418 285 128 0 0 chr12 109198428 109198475 -12059055 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 3 1418 881 245 18 32 chr12 109199047 109199266 -12058264 - ID_B1 SINE B4 -4 220 5 3 1418 237 352 68 43 chr12 109200345 109200508 -12057022 - MIR SINE MIR -19 243 77 3 1418 306 0 0 0 chr12 109200700 109200734 -12056796 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1418 505 211 0 15 chr12 109200735 109200865 -12056665 + (TA)n Simple_repeat Simple_repeat 2 129 0 3 1418 306 320 31 0 chr12 109200875 109200972 -12056558 - L1MC4a LINE L1 -1204 6678 6579 3 1418 180 341 12 12 chr12 109200973 109201056 -12056474 - MIRc SINE MIR -124 144 62 3 1418 219 69 0 0 chr12 109204999 109205028 -12052502 + (GAA)n Simple_repeat Simple_repeat 2 30 0 3 1418 232 241 112 12 chr12 109206417 109206497 -12051033 + L1MB7 LINE L1 5958 6045 -139 3 1418 249 264 143 3 chr12 109206784 109206898 -12050632 + MIRc SINE MIR 1 128 -140 3 1418 660 13 0 0 chr12 109206901 109206978 -12050552 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1418 1260 48 0 0 chr12 109207012 109207159 -12050371 - B1_Mm SINE Alu 0 147 1 3 1418 267 273 235 0 chr12 109207442 109207574 -12049956 + RSINE1 SINE B4 1 163 -2 3 1418 22 0 0 0 chr12 109208656 109208678 -12048852 + AT_rich Low_complexity Low_complexity 1 22 0 3 1418 225 0 0 0 chr12 109208925 109208950 -12048580 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1418 190 0 0 62 chr12 109210008 109210040 -12047490 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 3 1418 216 0 0 0 chr12 109211618 109211642 -12045888 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1418 231 211 0 0 chr12 109213159 109213216 -12044314 + A-rich Low_complexity Low_complexity 1 57 0 3 1418 205 262 15 15 chr12 109214635 109214701 -12042829 + GA-rich Low_complexity Low_complexity 3 68 0 3 1418 396 0 0 0 chr12 109216899 109216943 -12040587 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1418 252 86 0 0 chr12 109221161 109221196 -12036334 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 3 1418 189 0 0 0 chr12 109222505 109222526 -12035004 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1418 1212 224 93 35 chr12 109222990 109223388 -12034142 + RMER10A LTR ERVL 3 423 -19 3 1418 546 16 0 0 chr12 109223395 109223458 -12034072 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 3 1418 249 33 0 0 chr12 109224702 109224732 -12032798 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 3 1418 940 153 147 5 chr12 109224786 109224983 -12032547 + URR1B DNA MER1_type 1 225 0 3 1418 222 37 0 0 chr12 109225810 109225837 -12031693 + (GAA)n Simple_repeat Simple_repeat 1 27 0 3 1418 216 186 0 0 chr12 109228724 109228767 -12028763 + C-rich Low_complexity Low_complexity 1 43 0 3 1418 195 129 0 0 chr12 109229751 109229782 -12027748 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1418 245 172 16 0 chr12 109230522 109230586 -12026944 + (TTA)n Simple_repeat Simple_repeat 2 66 0 3 1418 251 71 24 0 chr12 109230835 109230877 -12026653 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 1418 282 95 0 0 chr12 109231007 109231049 -12026481 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 3 1418 261 98 0 0 chr12 109231479 109231520 -12026010 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1418 222 37 0 0 chr12 109232102 109232129 -12025401 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1418 235 211 14 36 chr12 109232541 109232679 -12024851 + (CA)n Simple_repeat Simple_repeat 2 136 0 3 1418 360 0 0 0 chr12 109233548 109233588 -12023942 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1418 961 103 14 20 chr12 109233667 109233815 -12023715 - B1_Mur3 SINE Alu -1 148 2 3 1418 297 75 0 0 chr12 109235066 109235106 -12022424 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1418 223 28 27 27 chr12 109235974 109236011 -12021519 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1418 332 141 31 0 chr12 109237937 109238001 -12019529 + GA-rich Low_complexity Low_complexity 1 66 0 3 1418 234 150 0 0 chr12 109239800 109239840 -12017690 + (TAA)n Simple_repeat Simple_repeat 3 42 0 3 1418 183 42 0 0 chr12 109239947 109239971 -12017559 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 1418 24 0 0 0 chr12 109240168 109240192 -12017338 + AT_rich Low_complexity Low_complexity 1 24 0 3 1418 191 103 26 0 chr12 109240998 109241037 -12016493 + (CCCCCT)n Simple_repeat Simple_repeat 5 44 0 3 1418 28 61 0 0 chr12 109241130 109241179 -12016351 + GC_rich Low_complexity Low_complexity 1 49 0 3 1418 218 136 23 0 chr12 109241469 109241513 -12016017 + CT-rich Low_complexity Low_complexity 2 46 0 3 1418 180 0 0 0 chr12 109241537 109241557 -12015973 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1418 22 70 0 0 chr12 109242129 109242172 -12015358 + GC_rich Low_complexity Low_complexity 1 43 0 3 1418 235 345 34 25 chr12 109244079 109244198 -12013332 - MIR3 SINE MIR -36 172 53 3 1418 288 0 0 0 chr12 109244987 109245019 -12012511 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1418 180 77 0 0 chr12 109245594 109245620 -12011910 + (G)n Simple_repeat Simple_repeat 1 26 0 3 1418 256 252 48 39 chr12 109246082 109246185 -12011345 - RSINE1 SINE B4 -61 104 1 3 1418 267 157 0 0 chr12 109247668 109247719 -12009811 + A-rich Low_complexity Low_complexity 1 51 0 3 1418 492 18 0 0 chr12 109248107 109248164 -12009366 + (GAAAA)n Simple_repeat Simple_repeat 3 59 0 3 1418 252 0 0 0 chr12 109249216 109249244 -12008286 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1418 768 274 0 10 chr12 109250022 109250063 -12007467 - B3 SINE B2 -9 207 168 3 1418 186 143 0 0 chr12 109250063 109250098 -12007432 + (CATG)n Simple_repeat Simple_repeat 3 37 0 3 1418 768 274 0 10 chr12 109250098 109250262 -12007268 - B3 SINE B2 -49 167 4 3 1418 402 299 26 0 chr12 109252126 109252243 -12005287 - MLT1J1 LTR MaLR 0 408 289 3 1418 1124 106 0 6 chr12 109253415 109253595 -12003935 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 3 1418 925 136 0 17 chr12 109253597 109253776 -12003754 + GA-rich Low_complexity Low_complexity 3 178 0 3 1418 333 0 0 0 chr12 109253778 109253815 -12003715 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 3 1418 1302 153 0 35 chr12 109254728 109254958 -12002572 - URR1A DNA MER1_type 0 226 5 3 1418 430 240 10 10 chr12 109255697 109255794 -12001736 - MLT1J1 LTR MaLR -281 163 67 3 1418 266 269 19 14 chr12 109256700 109256818 -12000712 - MLT1A1 LTR MaLR -65 343 184 3 1418 1094 278 36 58 chr12 109256841 109257204 -12000326 - MTE2b LTR MaLR -5 374 20 3 1418 1932 119 9 62 chr12 109257206 109257545 -11999985 + ORR1A4 LTR MaLR 1 321 -8 3 1418 1259 212 170 3 chr12 109258158 109258517 -11999013 + MTD LTR MaLR 1 419 0 3 1418 189 318 15 0 chr12 109258914 109258980 -11998550 + L2a LINE L2 3031 3097 -329 3 1418 601 297 60 109 chr12 109259010 109259247 -11998283 + L1M5 LINE L1 3385 3584 -2562 3 1418 1146 56 0 0 chr12 109259247 109259389 -11998141 - B1_Mus1 SINE Alu -5 143 2 3 1418 601 297 60 109 chr12 109259389 109259601 -11997929 + L1M5 LINE L1 3585 3812 -2334 3 1418 276 247 138 166 chr12 109259725 109260021 -11997509 + B4 SINE B4 5 292 0 3 1418 416 193 21 28 chr12 109260043 109260187 -11997343 + (CATA)n Simple_repeat Simple_repeat 4 146 0 3 1418 394 253 13 0 chr12 109260241 109260399 -11997131 + (CA)n Simple_repeat Simple_repeat 1 160 0 3 1418 558 79 0 0 chr12 109260468 109260544 -11996986 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 1418 334 285 136 16 chr12 109260638 109260763 -11996767 - MLT1B LTR MaLR -28 362 223 3 1418 209 188 50 0 chr12 109260768 109260848 -11996682 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 3 1418 616 285 13 0 chr12 109260919 109261070 -11996460 + B4 SINE B4 71 223 -69 3 1418 410 325 60 24 chr12 109261523 109261775 -11995755 + L1MC4 LINE L1 6347 6607 -1275 3 1418 660 98 26 73 chr12 109261821 109262093 -11995437 + (TAGA)n Simple_repeat Simple_repeat 1 258 0 3 1418 541 151 17 0 chr12 109262127 109262246 -11995284 + (TAGA)n Simple_repeat Simple_repeat 3 123 0 3 1418 308 247 122 11 chr12 109262292 109262445 -11995085 + L1MC4 LINE L1 6746 6928 -1114 3 1418 622 185 6 27 chr12 109262445 109262628 -11994902 + GA-rich Low_complexity Low_complexity 1 179 0 3 1418 547 282 191 14 chr12 109262628 109262973 -11994557 + L1MC4 LINE L1 6916 7321 -721 3 1418 221 197 16 0 chr12 109263177 109263238 -11994292 + GA-rich Low_complexity Low_complexity 6 67 0 3 1418 566 224 12 71 chr12 109263370 109263538 -11993992 + Lx8 LINE L1 6833 6990 -483 3 1418 2056 111 35 0 chr12 109263603 109263919 -11993611 + ORR1A2 LTR MaLR 1 327 0 3 1418 787 251 32 16 chr12 109264056 109264246 -11993284 + Lx8 LINE L1 6955 7147 -326 3 1418 446 275 58 29 chr12 109264235 109264407 -11993123 + Lx8 LINE L1 7296 7472 -1 3 1418 338 272 113 35 chr12 109264792 109264933 -11992597 + MER97a DNA MER1_type? 268 419 -475 3 1418 351 283 140 18 chr12 109264957 109265293 -11992237 + MER97a DNA MER1_type? 637 891 -3 3 1418 899 275 103 20 chr12 109265286 109265606 -11991924 + MTE2a LTR MaLR 1 346 -33 3 1418 274 331 93 0 chr12 109266063 109266202 -11991328 - L1MEe LINE L1 -4443 411 260 3 1418 189 337 89 15 chr12 109266744 109266946 -11990584 - L2c LINE L2 -239 3148 2932 3 1418 432 0 0 0 chr12 109267085 109267133 -11990397 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 3 1418 1200 114 7 2 chr12 109267149 109267946 -11989584 + (TGGA)n Simple_repeat Simple_repeat 1 801 0 3 1418 405 0 0 0 chr12 109267946 109267990 -11989540 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 3 1418 354 228 23 23 chr12 109267990 109268103 -11989427 + (TGGA)n Simple_repeat Simple_repeat 2 116 0 3 1418 303 93 0 0 chr12 109268165 109268208 -11989322 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 3 1418 786 177 20 13 chr12 109268590 109268739 -11988791 - B1_Mur4 SINE Alu 0 150 1 3 1418 407 273 109 36 chr12 109268840 109268858 -11988672 + B1F1 SINE Alu 2 144 -1 3 1418 419 270 78 0 chr12 109268858 109268973 -11988557 + ID_B1 SINE B4 98 221 -3 3 1418 1997 136 51 10 chr12 109269316 109269710 -11987820 - RMER17C LTR ERVK 0 410 1 3 1418 435 144 43 43 chr12 109270366 109270460 -11987070 - ORR1C1 LTR MaLR 0 378 285 4 1418 1897 169 84 62 chr12 109270450 109270854 -11986676 - MTC LTR MaLR -8 413 1 4 1418 1330 184 27 51 chr12 109270855 109271148 -11986382 - ORR1C1 LTR MaLR -80 298 13 4 1418 1088 35 35 0 chr12 109271158 109271299 -11986231 - B1_Mus2 SINE Alu 0 147 2 4 1418 229 0 54 27 chr12 109271355 109271392 -11986138 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1418 1056 284 60 113 chr12 109271392 109271651 -11985879 + RCHARR1 DNA MER1_type 65 329 -645 4 1418 378 256 0 0 chr12 109271651 109271733 -11985797 - ID4_ SINE ID 0 83 2 4 1418 1056 284 60 113 chr12 109271733 109272054 -11985476 + RCHARR1 DNA MER1_type 330 614 -360 4 1418 623 189 22 36 chr12 109272054 109272191 -11985339 - ORR1D2 LTR MaLR -2 368 234 4 1418 822 55 0 0 chr12 109272168 109272278 -11985252 + B1_Mm SINE Alu 26 135 -12 4 1418 243 0 0 0 chr12 109272280 109272307 -11985223 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1418 395 213 327 10 chr12 109272316 109272495 -11985035 - ORR1D2 LTR MaLR -104 255 1 4 1418 1032 252 32 82 chr12 109272502 109272843 -11984687 + RCHARR1 DNA MER1_type 615 938 -36 4 1418 858 171 7 7 chr12 109272843 109272984 -11984546 + RSINE1 SINE B4 3 143 -22 4 1418 23 0 0 0 chr12 109272998 109273021 -11984509 + AT_rich Low_complexity Low_complexity 1 23 0 4 1418 453 312 68 19 chr12 109273396 109273602 -11983928 + Charlie4a DNA MER1_type 249 464 -44 4 1418 221 232 78 16 chr12 109274632 109274713 -11982817 - MIR SINE MIR -97 171 83 4 1418 623 114 16 58 chr12 109274947 109275068 -11982462 - B1_Mur4 SINE Alu -2 148 33 4 1418 1070 100 0 12 chr12 109275068 109275240 -11982290 + (TAGA)n Simple_repeat Simple_repeat 2 171 0 4 1418 242 235 161 86 chr12 109275246 109275339 -11982191 - B4A SINE B4 -77 215 116 4 1418 276 304 215 18 chr12 109276677 109276850 -11980680 - B4A SINE B4 -6 286 63 4 1418 342 0 0 0 chr12 109277292 109277330 -11980200 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1418 1072 307 81 77 chr12 109277336 109278024 -11979506 + L1MA5 LINE L1 5530 6220 -80 4 1418 344 317 48 32 chr12 109278059 109278248 -11979282 + B2_Mm2 SINE B2 2 193 -2 4 1418 706 212 0 7 chr12 109279408 109279546 -11977984 + B1_Mus1 SINE Alu 7 143 -5 4 1418 259 287 28 73 chr12 109280723 109280739 -11976791 + MT2B LTR ERVL 147 157 -444 4 1418 459 204 10 1 chr12 109280739 109280838 -11976692 + B1_Mur3 SINE Alu 1 98 -49 4 1418 195 231 77 0 chr12 109282755 109282807 -11974723 + MIRc SINE MIR 103 158 -110 4 1418 417 247 52 0 chr12 109282845 109282942 -11974588 - RSINE1 SINE B4 -59 106 5 4 1418 886 235 78 0 chr12 109282945 109283149 -11974381 - ID_B1 SINE B4 0 224 5 4 1418 402 241 227 25 chr12 109283818 109283937 -11973593 + B1F SINE Alu 1 143 -6 4 1418 495 48 0 0 chr12 109283989 109284051 -11973479 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1418 320 258 0 53 chr12 109284306 109284494 -11973036 + (GCCTG)n Simple_repeat Simple_repeat 2 179 0 4 1418 318 195 21 84 chr12 109284429 109284619 -11972911 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 4 1418 183 144 45 57 chr12 109284640 109284817 -11972713 + (TCTG)n Simple_repeat Simple_repeat 1 175 0 4 1418 426 170 39 50 chr12 109284901 109285081 -11972449 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 4 1418 460 292 124 5 chr12 109285426 109285612 -11971918 + ORR1E LTR MaLR 3 210 -149 4 1418 344 227 108 15 chr12 109285772 109285919 -11971611 + MER44D DNA MER2_type 53 216 -123 4 1418 933 291 143 16 chr12 109286131 109286515 -11971015 - BGLII_A LTR ERVK -8 437 5 4 1418 481 221 12 53 chr12 109286575 109286729 -11970801 + B3 SINE B2 47 186 -9 4 1418 553 240 116 72 chr12 109286788 109286995 -11970535 - B3 SINE B2 0 216 1 4 1418 361 273 53 26 chr12 109287433 109287546 -11969984 - MLT2B4 LTR ERVL -353 203 88 4 1418 182 171 48 24 chr12 109288925 109288967 -11968563 - MIRc SINE MIR -108 160 118 4 1418 688 323 56 34 chr12 109289863 109290219 -11967311 + MLT1C LTR MaLR 97 460 -7 4 1418 185 94 0 30 chr12 109290476 109290509 -11967021 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1418 978 32 8 0 chr12 109290509 109290635 -11966895 - B1_Mm SINE Alu -1 146 20 4 1418 194 246 17 34 chr12 109290678 109290737 -11966793 + MIR SINE MIR 96 153 -55 4 1418 227 269 0 0 chr12 109291526 109291578 -11965952 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1418 399 68 0 0 chr12 109293531 109293590 -11963940 + (TCTCTG)n Simple_repeat Simple_repeat 3 61 0 4 1418 379 118 0 23 chr12 109293590 109293677 -11963853 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1418 226 341 49 0 chr12 109293728 109293810 -11963720 - B4A SINE B4 -196 96 11 4 1418 3419 162 123 66 chr12 109294074 109294888 -11962642 + RMER19B LTR ERVK 2 861 -41 4 1418 351 0 0 0 chr12 109294979 109295018 -11962512 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1418 237 161 34 80 chr12 109295263 109295351 -11962179 + T-rich Low_complexity Low_complexity 2 85 0 4 1418 1219 41 0 20 chr12 109295355 109295505 -11962025 - B1_Mm SINE Alu 0 147 1 4 1418 829 243 17 0 chr12 109295561 109295734 -11961796 - B3A SINE B2 -18 180 5 4 1418 260 283 39 39 chr12 109296244 109296347 -11961183 + LTR84b LTR ERVL 13 115 -646 4 1418 520 290 40 27 chr12 109296451 109296529 -11961001 + RSINE1 SINE B4 15 92 -73 4 1418 261 0 0 0 chr12 109296529 109296558 -11960972 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1418 520 290 40 27 chr12 109296558 109296628 -11960902 + RSINE1 SINE B4 93 164 -1 4 1418 620 382 30 42 chr12 109296664 109297066 -11960464 - MLT1J LTR MaLR 0 512 116 4 1418 960 213 32 0 chr12 109297190 109297378 -11960152 + B3A SINE B2 3 196 -2 4 1418 2018 70 0 199 chr12 109298003 109298064 -11959466 - ORR1A2 LTR MaLR 0 327 286 4 1418 3606 34 0 0 chr12 109298064 109298481 -11959049 - L1Md_T LINE L1 0 6582 6166 4 1418 2018 70 0 199 chr12 109298481 109298827 -11958703 - ORR1A2 LTR MaLR -42 285 1 4 1418 413 36 18 0 chr12 109299863 109299918 -11957612 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1418 648 281 20 102 chr12 109300207 109300530 -11957000 - MTEa LTR MaLR -74 305 7 4 1418 381 172 0 0 chr12 109300972 109301065 -11956465 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 1418 557 208 6 0 chr12 109301080 109301258 -11956272 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1418 212 232 36 0 chr12 109301258 109301314 -11956216 + (TATG)n Simple_repeat Simple_repeat 2 59 0 4 1418 636 222 0 0 chr12 109301317 109301497 -11956033 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1418 705 194 0 0 chr12 109301509 109301689 -11955841 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1418 282 315 118 0 chr12 109301735 109301862 -11955668 - Tigger7 DNA MER2_type -304 2187 2046 4 1418 249 348 15 0 chr12 109301843 109301940 -11955590 - Tigger7 DNA MER2_type -2253 238 144 4 1418 678 244 0 48 chr12 109303446 109303614 -11953916 + RSINE1 SINE B4 6 165 0 4 1418 238 364 88 36 chr12 109303451 109303645 -11953885 + B3 SINE B2 10 213 -3 4 1418 792 200 0 0 chr12 109303670 109303850 -11953680 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1418 629 261 65 0 chr12 109303860 109304044 -11953486 - B3A SINE B2 -2 196 1 4 1418 279 56 56 0 chr12 109304064 109304118 -11953412 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 4 1418 1136 258 44 65 chr12 109304129 109304514 -11953016 - MTE2a LTR MaLR 0 379 3 4 1418 636 310 25 46 chr12 109304847 109305084 -11952446 + B4 SINE B4 3 234 -58 4 1418 745 204 48 21 chr12 109305096 109305241 -11952289 + B1_Mur4 SINE Alu 1 149 -1 4 1418 378 0 0 0 chr12 109305347 109305389 -11952141 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1418 339 25 0 0 chr12 109307088 109307128 -11950402 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1418 452 297 42 0 chr12 109307147 109307265 -11950265 - ID_B1 SINE B4 -9 215 93 4 1418 1116 127 0 0 chr12 109307339 109307568 -11949962 + (TTC)n Simple_repeat Simple_repeat 1 229 0 4 1418 25 0 0 0 chr12 109308019 109308044 -11949486 + AT_rich Low_complexity Low_complexity 1 25 0 4 1418 286 311 52 30 chr12 109308261 109308445 -11949085 + MIR SINE MIR 34 225 -51 4 1418 1613 42 5 0 chr12 109310276 109310466 -11947064 - B2_Mm1a SINE B2 -1 192 2 4 1418 481 210 19 19 chr12 109310528 109310891 -11946639 + (CA)n Simple_repeat Simple_repeat 1 363 0 4 1418 309 187 26 39 chr12 109310892 109310970 -11946560 + (CATA)n Simple_repeat Simple_repeat 2 78 0 4 1418 353 187 28 21 chr12 109310978 109311120 -11946410 + (CA)n Simple_repeat Simple_repeat 2 144 0 4 1418 553 290 12 31 chr12 109311415 109311575 -11945955 + MTEa LTR MaLR 20 176 -203 4 1418 415 293 30 35 chr12 109311569 109311582 -11945948 + B4 SINE B4 81 126 -166 4 1418 589 203 1 1 chr12 109311582 109311700 -11945830 + B1_Mur1 SINE Alu 5 122 -27 4 1418 415 293 30 35 chr12 109311700 109311727 -11945803 + B4 SINE B4 127 236 -56 4 1418 256 250 29 0 chr12 109311782 109311850 -11945680 + MTEa LTR MaLR 291 360 -19 4 1418 384 318 6 69 chr12 109312229 109312388 -11945142 + MER3 DNA MER1_type 57 205 -4 4 1418 294 358 29 0 chr12 109313043 109313180 -11944350 + Lx9 LINE L1 7315 7455 -189 4 1418 297 0 0 0 chr12 109313184 109313217 -11944313 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1418 207 61 39 39 chr12 109313375 109313426 -11944104 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 4 1418 876 134 37 0 chr12 109313427 109313561 -11943969 - B1_Mus1 SINE Alu -8 140 2 4 1418 459 52 0 0 chr12 109313571 109313629 -11943901 + (TAA)n Simple_repeat Simple_repeat 3 60 0 4 1418 270 200 0 48 chr12 109313696 109313759 -11943771 + G-rich Low_complexity Low_complexity 3 62 0 4 1418 427 309 0 61 chr12 109313759 109313890 -11943640 + ID_B1 SINE B4 85 207 -17 4 177 1921 192 59 10 chr12 109314001 109314391 -11943139 - MTD LTR MaLR 0 419 11 4 1419 483 222 15 2 chr12 109315110 109315227 -11942303 - B1F SINE Alu -18 132 10 4 1419 290 238 0 0 chr12 109315176 109315239 -11942291 - B4A SINE B4 -147 145 83 4 1419 603 142 9 45 chr12 109315267 109315378 -11942152 + PB1D9 SINE Alu 2 108 -12 4 1419 590 26 13 0 chr12 109315378 109315454 -11942076 + (CAAAA)n Simple_repeat Simple_repeat 3 79 0 4 1419 848 252 9 28 chr12 109315654 109315861 -11941669 + B4A SINE B4 27 229 -63 4 1419 521 180 38 69 chr12 109315861 109315992 -11941538 + RSINE1 SINE B4 2 128 -37 4 1419 390 21 0 0 chr12 109316001 109316048 -11941482 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1419 922 163 174 0 chr12 109316073 109316251 -11941279 + URR1B DNA MER1_type 17 225 0 5 1419 2889 36 31 6 chr12 109317501 109317859 -11939671 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1419 27724 22 1 2 chr12 109317859 109321136 -11936394 - IAPEz-int LTR ERVK 0 6481 3210 5 1419 7163 91 153 5 chr12 109321135 109322273 -11935257 - IAPEz-int LTR ERVK -5168 1313 8 5 1419 2874 39 31 6 chr12 109322273 109322631 -11934899 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1419 489 107 0 0 chr12 109322652 109322705 -11934825 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1419 321 118 0 0 chr12 109322705 109322756 -11934774 + (CCTG)n Simple_repeat Simple_repeat 2 52 0 5 1419 489 107 0 0 chr12 109322756 109322777 -11934753 + (TC)n Simple_repeat Simple_repeat 2 22 0 5 1419 1148 56 28 0 chr12 109323011 109323153 -11934377 - B1_Mm SINE Alu 0 147 2 5 1419 222 247 0 0 chr12 109323205 109323282 -11934248 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1419 563 194 0 16 chr12 109323336 109323519 -11934011 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1419 186 207 0 0 chr12 109323532 109323590 -11933940 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1419 485 208 6 0 chr12 109323642 109323810 -11933720 + (CA)n Simple_repeat Simple_repeat 2 170 0 5 1419 241 232 0 0 chr12 109323825 109323881 -11933649 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1419 528 205 0 0 chr12 109323931 109324082 -11933448 + (CA)n Simple_repeat Simple_repeat 2 152 0 5 1419 189 107 0 0 chr12 109324084 109324112 -11933418 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1419 338 211 9 0 chr12 109324113 109324227 -11933303 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 1419 222 200 0 0 chr12 109324229 109324279 -11933251 + CT-rich Low_complexity Low_complexity 2 51 0 5 1419 183 80 0 0 chr12 109324295 109324320 -11933210 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1419 417 222 0 0 chr12 109324381 109324516 -11933014 + (CA)n Simple_repeat Simple_repeat 2 136 0 5 1419 185 103 0 25 chr12 109324576 109324588 -11932942 + (TC)n Simple_repeat Simple_repeat 2 13 0 5 1419 192 125 0 0 chr12 109324588 109324620 -11932910 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1419 185 103 0 25 chr12 109324620 109324647 -11932883 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 1419 191 232 12 0 chr12 109324711 109324793 -11932737 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1419 315 49 0 0 chr12 109324829 109324870 -11932660 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1419 207 0 0 0 chr12 109324870 109324892 -11932638 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1419 230 302 128 28 chr12 109324976 109325085 -11932445 - MLT1I LTR MaLR -209 202 83 5 1419 213 333 0 39 chr12 109327527 109327548 -11929982 + L2a LINE L2 3269 3289 -137 5 1419 441 0 0 0 chr12 109327548 109327597 -11929933 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1419 213 333 0 39 chr12 109327597 109327653 -11929877 + L2a LINE L2 3290 3343 -83 5 1419 286 318 94 79 chr12 109327738 109328004 -11929526 - B4 SINE B4 -17 275 6 5 1419 199 304 24 71 chr12 109328013 109328098 -11929432 + L2a LINE L2 3340 3420 -6 5 1419 280 336 63 35 chr12 109328135 109328277 -11929253 + MIR3 SINE MIR 36 181 -27 5 1419 1370 261 25 22 chr12 109328975 109329339 -11928191 - MTEb LTR MaLR -14 365 1 5 1419 1880 191 12 95 chr12 109330297 109330751 -11926779 + MTD LTR MaLR 1 404 -15 5 1419 297 0 0 0 chr12 109330768 109330801 -11926729 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1419 231 343 108 15 chr12 109330823 109330985 -11926545 + MIRc SINE MIR 14 197 -71 5 1419 1160 88 0 12 chr12 109331233 109331289 -11926241 + (GAA)n Simple_repeat Simple_repeat 1 56 0 5 1419 1179 84 0 0 chr12 109331289 109331467 -11926063 + (GGA)n Simple_repeat Simple_repeat 3 180 0 5 1419 1160 88 0 12 chr12 109331467 109331582 -11925948 + (GAA)n Simple_repeat Simple_repeat 3 116 0 5 1419 252 0 0 0 chr12 109331582 109331610 -11925920 + (AGGGGG)n Simple_repeat Simple_repeat 2 29 0 5 1419 378 143 0 0 chr12 109331610 109331673 -11925857 + (GAA)n Simple_repeat Simple_repeat 1 63 0 5 1419 490 367 36 21 chr12 109331812 109332232 -11925298 + L1M5 LINE L1 4564 4989 -1157 5 1419 412 309 0 76 chr12 109332389 109332508 -11925022 + PB1D10 SINE Alu 2 111 -6 5 1419 287 276 95 35 chr12 109332728 109332897 -11924633 + L1M5 LINE L1 5367 5545 -695 5 1419 231 277 36 12 chr12 109333574 109333658 -11923872 - MIRb SINE MIR -58 210 125 5 1419 564 286 15 22 chr12 109333772 109333908 -11923622 - RSINE1 SINE B4 -29 136 2 5 1419 376 323 107 48 chr12 109333911 109334181 -11923349 + ORR1E LTR MaLR 68 353 -6 5 1419 348 24 0 0 chr12 109334232 109334273 -11923257 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 5 1419 294 182 30 0 chr12 109335142 109335204 -11922326 + B1F SINE Alu 30 96 -53 5 1419 284 133 0 0 chr12 109335545 109335590 -11921940 - ORR1B2 LTR MaLR -322 45 1 5 1419 666 299 105 53 chr12 109337337 109337656 -11919874 - L1MC4a LINE L1 -349 7533 7204 5 1419 1644 42 0 0 chr12 109337656 109337849 -11919681 - B2_Mm1t SINE B2 0 193 1 5 1419 666 299 105 53 chr12 109337849 109338130 -11919400 - L1MC4a LINE L1 -679 7203 6902 5 1419 709 228 61 122 chr12 109339144 109339389 -11918141 - B4 SINE B4 -62 230 1 5 1419 445 255 21 0 chr12 109339389 109339482 -11918048 - B4 SINE B4 -197 95 1 5 1419 186 43 0 0 chr12 109340126 109340149 -11917381 + (G)n Simple_repeat Simple_repeat 1 23 0 5 1419 410 284 129 6 chr12 109340409 109340579 -11916951 + Lx8 LINE L1 7033 7223 -250 5 1419 359 302 53 23 chr12 109340662 109340794 -11916736 + RMER15 LTR ERVL 440 575 0 5 1419 391 241 45 11 chr12 109342394 109342482 -11915048 + PB1D10 SINE Alu 14 104 -13 5 1419 383 213 31 21 chr12 109342854 109342950 -11914580 - B4A SINE B4 -195 97 1 5 1419 374 292 72 29 chr12 109343000 109343135 -11914395 - ID_B1 SINE B4 -140 152 6 5 1419 361 233 67 10 chr12 109346195 109346299 -11911231 + PB1D10 SINE Alu 1 110 -7 5 1419 976 117 6 6 chr12 109346370 109346534 -11910996 + (GA)n Simple_repeat Simple_repeat 1 164 0 5 1419 429 260 36 18 chr12 109347228 109347396 -11910134 + B3 SINE B2 2 172 -23 5 1419 21 0 0 0 chr12 109349341 109349362 -11908168 + AT_rich Low_complexity Low_complexity 1 21 0 5 1419 266 224 0 0 chr12 109351988 109352037 -11905493 + BC1_Mm scRNA scRNA 9 57 -95 5 1419 269 244 184 11 chr12 109353277 109353364 -11904166 + ID_B1 SINE B4 87 188 -36 5 1419 243 0 0 0 chr12 109353370 109353397 -11904133 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1419 222 286 107 0 chr12 109353532 109353616 -11903914 - L2a LINE L2 -340 3086 2994 5 1419 571 310 52 154 chr12 109353911 109354120 -11903410 + B4A SINE B4 24 220 -72 5 1419 765 141 111 0 chr12 109354120 109354255 -11903275 + B1_Mur4 SINE Alu 1 150 0 5 1419 571 310 52 154 chr12 109354255 109354331 -11903199 + B4A SINE B4 221 280 -12 5 1419 252 59 0 0 chr12 109354344 109354378 -11903152 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1419 207 0 0 0 chr12 109356576 109356599 -11900931 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1419 373 304 0 17 chr12 109358601 109358718 -11898812 + PB1D10 SINE Alu 2 116 -1 5 1419 24 32 0 0 chr12 109359143 109359174 -11898356 + AT_rich Low_complexity Low_complexity 1 31 0 5 1419 251 171 337 12 chr12 109360540 109360623 -11896907 + PB1D10 SINE Alu 1 110 -7 5 1419 1856 9 0 0 chr12 109363836 109364047 -11893483 + L1Md_A LINE L1 6372 6582 0 5 1419 476 93 13 0 chr12 109364193 109364268 -11893262 + (TTTTC)n Simple_repeat Simple_repeat 5 80 0 5 1419 451 260 67 0 chr12 109364497 109364601 -11892929 + PB1D9 SINE Alu 1 111 -9 5 1419 2232 95 12 25 chr12 109364919 109365242 -11892288 + ORR1A2 LTR MaLR 1 319 -8 5 1419 10537 131 58 43 chr12 109365246 109367034 -11890496 + ORR1A2-int LTR MaLR 1 1829 -134 5 1419 717 137 322 0 chr12 109367034 109367180 -11890350 - B2_Mm2 SINE B2 -1 194 2 5 1419 10537 131 58 43 chr12 109367180 109367325 -11890205 + ORR1A2-int LTR MaLR 1830 1963 0 5 1419 2204 96 38 10 chr12 109367325 109367639 -11889891 + ORR1A2 LTR MaLR 1 323 -4 5 1419 184 283 0 54 chr12 109367651 109367707 -11889823 - MIRm SINE MIR -113 163 111 5 1419 243 0 0 0 chr12 109368016 109368043 -11889487 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1419 1957 187 22 3 chr12 109368402 109368767 -11888763 + ORR1D1 LTR MaLR 3 374 0 5 1419 352 200 112 19 chr12 109368792 109368899 -11888631 + PB1D10 SINE Alu 1 117 0 5 1419 327 284 10 50 chr12 109369157 109369257 -11888273 + B4 SINE B4 192 287 -5 5 1419 198 308 64 83 chr12 109371758 109371914 -11885616 - L2b LINE L2 -79 3296 3144 5 1419 411 289 49 8 chr12 109372637 109372759 -11884771 + ID_B1 SINE B4 84 210 -14 5 1419 315 0 0 0 chr12 109372777 109372812 -11884718 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1419 4313 146 123 27 chr12 109373092 109373944 -11883586 + RMER21A LTR ERV1 8 941 -6 5 1419 456 242 497 63 chr12 109374597 109374850 -11882680 - ORR1D2 LTR MaLR -7 363 1 5 1419 465 286 44 29 chr12 109374867 109375004 -11882526 + ID_B1 SINE B4 84 222 -2 5 1419 306 294 47 140 chr12 109375072 109375372 -11882158 + MLT1F2 LTR MaLR 260 677 -3 5 1419 292 197 12 174 chr12 109376514 109376600 -11880930 + ID2 SINE ID 12 83 0 5 1419 574 289 8 8 chr12 109376626 109376755 -11880775 + RSINE1 SINE B4 23 151 -14 5 1419 2291 101 59 0 chr12 109376962 109377299 -11880231 + L1_Mus3 LINE L1 6282 6638 0 5 1419 1155 48 14 7 chr12 109377306 109377452 -11880078 + B1_Mm SINE Alu 1 147 0 5 1419 789 41 0 0 chr12 109377458 109377555 -11879975 + (GAGAA)n Simple_repeat Simple_repeat 4 100 0 5 1419 235 338 116 36 chr12 109377658 109377796 -11879734 - MIR SINE MIR -4 258 110 5 1419 245 51 26 0 chr12 109379217 109379256 -11878274 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1419 319 364 16 0 chr12 109379259 109379388 -11878142 + L1ME2 LINE L1 5090 5220 -926 5 1419 314 248 86 0 chr12 109379759 109379890 -11877640 + L1ME2 LINE L1 5320 5460 -984 5 1419 271 311 79 26 chr12 109380096 109380248 -11877282 + RSINE1 SINE B4 5 164 -1 5 1419 275 292 0 0 chr12 109380263 109380309 -11877221 + polypyrimidine Low_complexity Low_complexity 46 91 0 5 1419 509 67 57 9 chr12 109380309 109380415 -11877115 + (TCTG)n Simple_repeat Simple_repeat 1 111 0 5 1419 275 292 0 0 chr12 109380415 109380457 -11877073 + polypyrimidine Low_complexity Low_complexity 4 45 0 5 1419 582 174 122 0 chr12 109380466 109380581 -11876949 + MTEa LTR MaLR 3 131 -248 5 1419 180 0 0 0 chr12 109380735 109380755 -11876775 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1419 241 158 0 0 chr12 109380871 109380909 -11876621 + MTEa LTR MaLR 206 243 -136 5 1419 401 240 6 204 chr12 109381052 109381214 -11876316 + B1F1 SINE Alu 13 142 -7 5 1419 325 353 117 22 chr12 109381230 109381453 -11876077 + L1ME2 LINE L1 5785 6028 -136 5 1419 243 0 0 0 chr12 109381840 109381867 -11875663 + (CAGGA)n Simple_repeat Simple_repeat 1 27 0 5 1419 692 228 29 23 chr12 109381873 109382048 -11875482 + Lx8 LINE L1 7169 7344 -129 5 1419 2245 24 0 0 chr12 109382682 109382933 -11874597 - L1Md_F2 LINE L1 -231 6351 6101 6 1419 1513 93 44 18 chr12 109382933 109383224 -11874306 + L1Md_F2 LINE L1 6348 6582 0 6 1419 1120 70 0 7 chr12 109383342 109383486 -11874044 - B1_Mus1 SINE Alu -5 143 1 6 1419 218 204 20 0 chr12 109384681 109384730 -11872800 + G-rich Low_complexity Low_complexity 4 53 0 6 1419 278 314 15 92 chr12 109385080 109385210 -11872320 + PB1 SINE Alu 1 120 -7 6 1419 200 183 61 91 chr12 109385624 109385690 -11871840 - L2c LINE L2 -66 3321 3258 6 1419 387 60 0 0 chr12 109385915 109385965 -11871565 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1419 428 286 67 14 chr12 109387950 109388159 -11869371 + L1MC4a LINE L1 6957 7176 -706 6 1419 319 265 123 24 chr12 109388254 109388424 -11869106 + L1MC4a LINE L1 7367 7553 -329 6 1419 271 193 18 0 chr12 109388626 109388683 -11868847 + L1MC4a LINE L1 7412 7469 -413 6 1419 1961 199 22 5 chr12 109389191 109389559 -11867971 - MTD LTR MaLR -2 417 44 6 1419 1226 289 115 24 chr12 109389639 109390099 -11867431 + MER44B DNA MER2_type 1 502 -48 6 1419 318 80 0 0 chr12 109391380 109391430 -11866100 + (CAAGA)n Simple_repeat Simple_repeat 2 51 0 6 1419 1661 214 173 22 chr12 109392314 109392777 -11864753 + MT2A LTR ERVL 1 533 0 6 1419 676 179 98 0 chr12 109392889 109393012 -11864518 + B1_Mur1 SINE Alu 2 136 -13 6 1419 969 69 0 0 chr12 109393012 109393142 -11864388 + (GA)n Simple_repeat Simple_repeat 1 130 0 6 1419 492 221 168 0 chr12 109393282 109393395 -11864135 + B1F2 SINE Alu 18 149 0 6 1419 24 67 0 0 chr12 109393866 109393911 -11863619 + AT_rich Low_complexity Low_complexity 1 45 0 6 1419 186 344 105 16 chr12 109394077 109394201 -11863329 - MIR SINE MIR -116 146 12 6 1419 251 266 84 0 chr12 109394215 109394297 -11863233 - MIRb SINE MIR -177 91 4 6 1419 209 132 0 26 chr12 109394442 109394481 -11863049 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 6 1419 849 209 99 25 chr12 109395462 109395663 -11861867 - B3 SINE B2 0 216 1 6 1419 255 274 60 34 chr12 109397152 109397269 -11860261 + MLT1A0 LTR MaLR 175 294 -71 6 1419 993 219 51 0 chr12 109399126 109399322 -11858208 + B3 SINE B2 3 208 -8 6 1419 877 177 132 21 chr12 109400326 109400516 -11857014 + B3 SINE B2 1 211 -5 6 1419 1513 73 16 0 chr12 109400534 109400725 -11856805 + B2_Mm2 SINE B2 1 194 -1 6 1419 249 229 0 20 chr12 109400770 109400819 -11856711 + PB1D10 SINE Alu 2 49 -68 6 1419 1216 81 40 6 chr12 109402978 109403151 -11854379 + B2_Mm2 SINE B2 17 195 0 6 1419 1231 41 7 0 chr12 109404925 109405072 -11852458 + B1_Mus1 SINE Alu 1 148 0 6 1419 278 0 0 51 chr12 109405072 109405111 -11852419 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 6 1419 243 308 0 0 chr12 109406361 109406426 -11851104 - L3 LINE CR1 -257 4232 4168 6 1419 1247 41 0 0 chr12 109408574 109408721 -11848809 + B1_Mus2 SINE Alu 1 147 0 6 1419 207 135 54 0 chr12 109408880 109408917 -11848613 + GA-rich Low_complexity Low_complexity 4 42 0 6 1419 234 268 97 82 chr12 109411392 109411587 -11845943 - L3 LINE CR1 -2 4487 4290 6 1419 759 156 55 28 chr12 109413006 109413151 -11844379 + B1_Mur4 SINE Alu 1 149 -1 6 1419 506 290 10 57 chr12 109413959 109414153 -11843377 + B3A SINE B2 2 186 -12 6 1419 631 316 37 17 chr12 109414939 109415180 -11842350 + MER2 DNA MER2_type 24 269 -76 6 1419 332 254 0 0 chr12 109415533 109415604 -11841926 - ID4_ SINE ID -10 73 3 6 1419 295 275 19 38 chr12 109415604 109415710 -11841820 - PB1D10 SINE Alu -13 104 1 6 1419 344 173 35 47 chr12 109416379 109416464 -11841066 - PB1D10 SINE Alu 0 117 34 6 1419 21 100 0 0 chr12 109417053 109417123 -11840407 + GC_rich Low_complexity Low_complexity 1 70 0 6 1419 249 33 0 0 chr12 109417438 109417468 -11840062 + (CGG)n Simple_repeat Simple_repeat 2 31 0 6 1419 26 50 0 0 chr12 109417528 109417568 -11839962 + GC_rich Low_complexity Low_complexity 1 40 0 6 1419 550 214 0 27 chr12 109418770 109418904 -11838626 - B1_Mur1 SINE Alu -13 136 13 6 1419 221 264 0 19 chr12 109419068 109419122 -11838408 + L2c LINE L2 3333 3385 -2 6 1419 666 226 8 0 chr12 109419189 109419322 -11838208 + B1_Mur3 SINE Alu 9 142 -7 6 1419 562 304 73 18 chr12 109419742 109419953 -11837577 + B3A SINE B2 2 209 -7 6 1419 849 285 94 23 chr12 109419955 109420221 -11837309 + B4A SINE B4 2 286 -6 6 1419 254 385 0 0 chr12 109420373 109420469 -11837061 + L3 LINE CR1 3471 3566 -923 6 1419 1047 176 77 0 chr12 109420571 109420753 -11836777 + B3 SINE B2 1 196 -20 6 1419 532 216 169 21 chr12 109420801 109420943 -11836587 + B3A SINE B2 27 189 -9 6 1419 39 38 0 0 chr12 109421480 109421533 -11835997 + AT_rich Low_complexity Low_complexity 1 53 0 6 1419 598 231 15 51 chr12 109421540 109421677 -11835853 + B1_Mur2 SINE Alu 1 132 -17 6 1419 440 198 9 0 chr12 109421712 109421811 -11835719 + PB1D10 SINE Alu 10 112 -8 6 1419 328 202 34 0 chr12 109421919 109422008 -11835522 + CT-rich Low_complexity Low_complexity 3 94 0 6 1419 730 167 121 0 chr12 109422742 109422874 -11834656 - B1_Mur2 SINE Alu 0 149 2 6 1419 240 102 49 33 chr12 109423035 109423096 -11834434 + A-rich Low_complexity Low_complexity 4 65 0 6 1419 830 229 50 0 chr12 109423099 109423300 -11834230 - B3 SINE B2 -4 212 2 6 1419 480 324 138 12 chr12 109423325 109423572 -11833958 - L1MC LINE L1 -2159 5723 5446 6 1419 777 165 15 15 chr12 109425077 109425212 -11832318 + B1_Mur4 SINE Alu 5 139 -11 6 1419 303 208 124 38 chr12 109425700 109425805 -11831725 - L1MDa LINE L1 -4137 2496 2383 6 1419 646 227 153 0 chr12 109426020 109426183 -11831347 + B3 SINE B2 24 211 -5 6 1419 1296 106 37 5 chr12 109426283 109426472 -11831058 - B2_Mm2 SINE B2 0 195 1 6 1419 486 264 99 23 chr12 109426603 109426774 -11830756 - MLT1A1 LTR MaLR 0 408 225 6 1419 509 285 8 0 chr12 109427685 109427815 -11829715 - RSINE1 SINE B4 -31 134 4 6 1419 2125 70 41 44 chr12 109427840 109428156 -11829374 + L1Md_F2 LINE L1 6268 6582 0 6 1419 801 42 238 25 chr12 109428177 109428299 -11829231 + B1_Mus1 SINE Alu 1 148 0 6 1419 218 350 0 58 chr12 109428566 109428594 -11828936 - PB1D10 SINE Alu -19 98 31 6 1419 224 250 15 15 chr12 109428594 109428659 -11828871 - ID_B1 SINE B4 -67 157 93 6 1419 756 271 146 19 chr12 109428672 109429090 -11828440 - L1MC1 LINE L1 -9 6324 5854 6 1419 450 0 0 0 chr12 109429531 109429581 -11827949 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1419 404 176 75 47 chr12 109431304 109431411 -11826119 + B1F SINE Alu 40 149 0 6 1419 231 267 0 74 chr12 109432019 109432100 -11825430 - ID4 SINE ID -1 82 8 6 1419 746 143 16 16 chr12 109435839 109435960 -11821570 - B1_Mur1 SINE Alu 0 149 29 6 1419 339 239 41 0 chr12 109436272 109436370 -11821160 + PB1D10 SINE Alu 9 107 -10 6 1419 2842 86 2 5 chr12 109436970 109437368 -11820162 - L1_Mus4 LINE L1 0 6636 6240 6 1419 207 88 0 0 chr12 109438816 109438850 -11818680 + (TGGG)n Simple_repeat Simple_repeat 4 37 0 6 1419 330 259 12 12 chr12 109438859 109438945 -11818585 - PB1D10 SINE Alu -21 96 11 6 1419 335 180 96 18 chr12 109439471 109439608 -11817922 - B3A SINE B2 -9 207 2 6 1419 418 212 6 88 chr12 109440586 109440746 -11816784 + C-rich Low_complexity Low_complexity 1 147 0 6 1419 261 0 0 0 chr12 109442172 109442201 -11815329 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1419 194 0 39 0 chr12 109443448 109443474 -11814056 + (CCCCCG)n Simple_repeat Simple_repeat 4 30 0 6 1419 264 225 65 43 chr12 109443638 109443731 -11813799 - MIRm SINE MIR -134 142 48 6 1420 253 109 0 35 chr12 109445255 109445312 -11812218 + (CCCCAG)n Simple_repeat Simple_repeat 2 56 0 6 1420 207 0 0 0 chr12 109451465 109451488 -11806042 + (TCCTG)n Simple_repeat Simple_repeat 2 24 0 6 1420 421 252 203 0 chr12 109453685 109453808 -11803722 + MER20 DNA MER1_type 1 148 -71 6 1420 306 0 0 0 chr12 109454426 109454460 -11803070 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1420 201 314 18 133 chr12 109455810 109456007 -11801523 - MIRm SINE MIR -64 204 38 6 1420 245 387 45 26 chr12 109456568 109456722 -11800808 - MIRb SINE MIR -85 183 27 6 1420 468 296 142 33 chr12 109456778 109457080 -11800450 + MLT1B LTR MaLR 51 385 -5 6 1420 1204 94 0 0 chr12 109460303 109460473 -11797057 + B2_Mm1t SINE B2 2 171 -22 6 1420 268 356 68 14 chr12 109460511 109460659 -11796871 + MTEa LTR MaLR 61 216 -163 6 1420 29 0 0 0 chr12 109461892 109461921 -11795609 + GC_rich Low_complexity Low_complexity 1 29 0 6 1420 727 282 41 46 chr12 109462250 109462469 -11795061 + ID_B1 SINE B4 2 219 -5 6 1420 771 37 0 27 chr12 109463470 109463483 -11794047 - B1_Mus2 SINE Alu 0 147 137 6 1420 191 36 36 0 chr12 109463483 109463511 -11794019 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1420 771 37 0 27 chr12 109463511 109463607 -11793923 - B1_Mus2 SINE Alu -11 136 41 6 1420 940 151 66 22 chr12 109466556 109466739 -11790791 - URR1B DNA MER1_type 0 225 35 6 1420 267 31 0 0 chr12 109466771 109466803 -11790727 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 6 1420 486 271 150 0 chr12 109466804 109466944 -11790586 + RSINE1 SINE B4 5 165 0 6 1420 636 111 0 0 chr12 109466993 109467092 -11790438 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 6 1420 230 314 11 65 chr12 109467368 109467460 -11790070 - MER5B DNA MER1_type -91 87 1 6 1420 281 200 191 43 chr12 109468182 109468276 -11789254 - PB1D10 SINE Alu 0 117 10 6 1420 326 224 61 0 chr12 109468412 109468508 -11789022 + PB1D10 SINE Alu 10 113 -7 7 1420 511 323 51 13 chr12 109468518 109468662 -11788868 + RSINE1 SINE B4 3 153 -12 7 1420 198 103 0 0 chr12 109468662 109468691 -11788839 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1420 511 323 51 13 chr12 109468691 109468703 -11788827 + RSINE1 SINE B4 154 165 0 7 1420 1694 31 0 0 chr12 109468941 109469134 -11788396 + B2_Mm1a SINE B2 1 193 0 7 1420 946 242 10 102 chr12 109470656 109470969 -11786561 + B4A SINE B4 1 284 -8 7 1420 487 53 27 0 chr12 109471010 109471085 -11786445 + (CA)n Simple_repeat Simple_repeat 1 77 0 7 1420 22 0 0 0 chr12 109471794 109471816 -11785714 + GC_rich Low_complexity Low_complexity 1 22 0 7 1420 292 289 0 0 chr12 109472991 109473074 -11784456 + MIR SINE MIR 41 123 -85 7 1420 519 168 0 0 chr12 109473736 109473831 -11783699 + GA-rich Low_complexity Low_complexity 1 95 0 7 1420 248 335 101 59 chr12 109473991 109474210 -11783320 + ORR1E LTR MaLR 79 306 -53 7 1420 252 269 0 0 chr12 109474472 109474539 -11782991 + C-rich Low_complexity Low_complexity 1 67 0 7 1420 411 312 70 115 chr12 109475079 109475365 -11782165 - B4A SINE B4 -19 273 1 7 1420 224 222 0 0 chr12 109475439 109475484 -11782046 + PB1D7 SINE Alu 40 84 -36 7 1420 195 42 0 0 chr12 109477359 109477383 -11780147 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 7 1420 239 281 89 89 chr12 109477746 109477914 -11779616 + MT-int LTR MaLR 182 349 -749 7 1420 211 391 0 9 chr12 109478682 109478793 -11778737 + (CA)n Simple_repeat Simple_repeat 1 110 0 7 1420 237 65 0 0 chr12 109479346 109479377 -11778153 + (CACG)n Simple_repeat Simple_repeat 1 31 0 7 1420 256 363 110 7 chr12 109479890 109480026 -11777504 - L1MC LINE L1 -2226 5656 5507 7 1420 424 0 36 0 chr12 109484223 109484279 -11773251 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1420 417 288 117 0 chr12 109484282 109484393 -11773137 - RSINE1 SINE B4 -11 154 31 7 1420 614 200 0 0 chr12 109486071 109486181 -11771349 + RSINE1 SINE B4 3 112 -53 7 1420 1134 120 0 3 chr12 109486688 109487002 -11770528 + (TTGG)n Simple_repeat Simple_repeat 1 312 0 7 1420 555 212 225 6 chr12 109488820 109489007 -11768523 + B4 SINE B4 1 228 -64 7 1420 277 281 103 51 chr12 109488934 109489043 -11768487 - RMER17D LTR ERVK -333 556 435 7 1420 1200 68 0 0 chr12 109489043 109489190 -11768340 + B1_Mus1 SINE Alu 1 147 -1 7 1420 277 281 103 51 chr12 109489190 109489275 -11768255 - RMER17D LTR ERVK -455 434 352 7 1420 422 200 189 9 chr12 109489278 109489389 -11768141 + B3A SINE B2 26 156 -42 7 1420 680 100 18 0 chr12 109489920 109490030 -11767500 + (CGTG)n Simple_repeat Simple_repeat 4 115 0 7 1420 252 216 0 38 chr12 109490041 109490094 -11767436 - B4 SINE B4 -27 265 215 7 1420 198 0 0 0 chr12 109490117 109490139 -11767391 + (TTCG)n Simple_repeat Simple_repeat 3 24 0 7 1420 429 20 0 0 chr12 109490787 109490837 -11766693 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1420 243 61 0 0 chr12 109492819 109492852 -11764678 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1420 351 0 0 0 chr12 109492852 109492890 -11764640 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1420 423 0 0 0 chr12 109492890 109492936 -11764594 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1420 1107 109 0 0 chr12 109493207 109493354 -11764176 + B1_Mus2 SINE Alu 1 147 0 7 1420 323 23 23 0 chr12 109494083 109494127 -11763403 + (AGGGGG)n Simple_repeat Simple_repeat 2 46 0 7 1420 324 0 0 0 chr12 109494523 109494559 -11762971 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1420 215 234 0 0 chr12 109494908 109494955 -11762575 + B1_Mus2 SINE Alu 3 49 -98 7 1420 225 83 0 0 chr12 109494956 109494992 -11762538 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1420 298 384 31 23 chr12 109495073 109495329 -11762201 + L1MC3 LINE L1 7527 7784 -1 7 1420 799 263 91 36 chr12 109495343 109495619 -11761911 + B4A SINE B4 2 292 0 7 1420 1579 16 15 64 chr12 109496355 109496557 -11760973 + B2_Mm1a SINE B2 2 193 0 7 1420 227 320 103 54 chr12 109496899 109497084 -11760446 + MIRm SINE MIR 50 243 -33 7 1420 684 147 144 23 chr12 109498704 109498836 -11758694 + B1_Mur3 SINE Alu 1 148 -1 7 1420 457 213 36 94 chr12 109498852 109499021 -11758509 + B3A SINE B2 1 173 -22 7 1420 190 245 0 36 chr12 109499573 109499628 -11757902 + MIR SINE MIR 85 137 -71 7 1420 502 300 18 30 chr12 109500005 109500170 -11757360 + RSINE1 SINE B4 3 165 0 1 1420 1167 182 0 0 chr12 109500793 109501155 -11756375 + (CA)n Simple_repeat Simple_repeat 1 362 0 2 1420 258 229 0 0 chr12 109501166 109501236 -11756294 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1420 23 0 0 0 chr12 109503611 109503634 -11753896 + GC_rich Low_complexity Low_complexity 1 23 0 3 1420 513 195 124 0 chr12 109505016 109505129 -11752401 + B1_Mur1 SINE Alu 9 135 -14 4 1420 197 65 0 31 chr12 109505129 109505161 -11752369 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 5 1420 198 0 0 0 chr12 109505230 109505252 -11752278 + (CCA)n Simple_repeat Simple_repeat 3 24 0 6 1420 189 362 36 42 chr12 109506317 109506484 -11751046 - L4 LINE RTE -1583 446 281 7 1420 698 23 0 0 chr12 109506531 109506619 -11750911 + B1_Mus2 SINE Alu 1 88 -59 8 1420 557 228 44 7 chr12 109506615 109506752 -11750778 + B3 SINE B2 68 209 -7 9 1420 646 161 36 0 chr12 109506765 109506877 -11750653 - PB1D9 SINE Alu 0 120 5 1 1420 24 32 0 0 chr12 109506891 109506922 -11750608 + AT_rich Low_complexity Low_complexity 1 31 0 1 1420 306 0 0 0 chr12 109508522 109508556 -11748974 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1420 216 0 0 0 chr12 109509318 109509342 -11748188 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1420 180 0 0 0 chr12 109510788 109510808 -11746722 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1420 232 291 36 86 chr12 109511796 109511935 -11745595 - MIRb SINE MIR -23 245 114 1 1420 226 87 43 0 chr12 109512820 109512866 -11744664 + (CCG)n Simple_repeat Simple_repeat 3 50 0 1 1420 216 111 0 0 chr12 109513294 109513330 -11744200 + (CCG)n Simple_repeat Simple_repeat 1 36 0 1 1420 28 29 0 0 chr12 109513371 109513406 -11744124 + GC_rich Low_complexity Low_complexity 1 35 0 1 1420 27 92 0 0 chr12 109513606 109513682 -11743848 + GC_rich Low_complexity Low_complexity 1 76 0 1 1420 21 0 0 0 chr12 109513749 109513770 -11743760 + GC_rich Low_complexity Low_complexity 1 21 0 2 1420 186 43 0 0 chr12 109514148 109514171 -11743359 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 2 1420 185 323 0 0 chr12 109515085 109515147 -11742383 - L2 LINE L2 -352 3067 3006 2 1420 723 223 19 0 chr12 109515154 109515311 -11742219 + RSINE1 SINE B4 2 161 -4 2 1420 28 0 0 0 chr12 109515325 109515353 -11742177 + AT_rich Low_complexity Low_complexity 1 28 0 2 1420 308 218 88 10 chr12 109515370 109515472 -11742058 + PB1D9 SINE Alu 11 120 0 2 1420 180 176 0 0 chr12 109515475 109515509 -11742021 + A-rich Low_complexity Low_complexity 4 37 0 2 1420 306 0 0 0 chr12 109516750 109516784 -11740746 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1420 1413 181 0 5 chr12 109517720 109517942 -11739588 + URR1B DNA MER1_type 5 225 0 2 1420 1221 68 0 0 chr12 109518163 109518310 -11739220 + B1_Mm SINE Alu 1 147 0 2 1420 1142 69 14 0 chr12 109518482 109518626 -11738904 + B1_Mus2 SINE Alu 1 146 -1 3 1420 272 299 50 33 chr12 109518812 109518933 -11738597 - RSINE1 SINE B4 -35 130 8 3 1420 418 309 29 0 chr12 109519014 109519150 -11738380 + ID_B1 SINE B4 66 205 -19 3 1420 795 154 81 0 chr12 109519775 109519911 -11737619 + B1_Mur3 SINE Alu 3 149 0 3 1420 1271 41 0 0 chr12 109520077 109520224 -11737306 + B1_Mm SINE Alu 1 147 0 3 1420 454 275 46 0 chr12 109520226 109520357 -11737173 - B1_Mur2 SINE Alu -12 137 1 3 1420 825 197 7 0 chr12 109520388 109520525 -11737005 + B1_Mus1 SINE Alu 3 140 -8 3 1420 808 259 129 4 chr12 109520935 109521175 -11736355 + RLTR18B LTR ERVK 243 512 0 3 1420 233 345 36 0 chr12 109521277 109521387 -11736143 - PB1D10 SINE Alu -3 114 1 3 1420 270 295 26 0 chr12 109521409 109521487 -11736043 - ID4 SINE ID -1 82 3 3 1420 1645 21 5 5 chr12 109521881 109522073 -11735457 - B2_Mm1a SINE B2 0 193 2 4 1420 234 0 0 0 chr12 109523504 109523530 -11734000 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1420 1028 128 7 0 chr12 109524360 109524509 -11733021 - B1_Mur4 SINE Alu 0 150 1 4 1420 1047 37 0 0 chr12 109524993 109525128 -11732402 + B1_Mus2 SINE Alu 13 147 0 4 1420 365 274 42 0 chr12 109525134 109525229 -11732301 - RSINE1 SINE B4 -46 119 21 4 1420 216 353 58 10 chr12 109525900 109526003 -11731527 + MIRb SINE MIR 118 225 -43 4 1420 1040 81 43 6 chr12 109526033 109526194 -11731336 + B2_Mm2 SINE B2 23 189 -6 4 1420 1722 21 0 0 chr12 109526199 109526392 -11731138 + B2_Mm1a SINE B2 1 193 0 4 1420 355 289 53 87 chr12 109526421 109526629 -11730901 - MER31A LTR ERV1 -9 476 276 4 1420 356 221 40 50 chr12 109526657 109526757 -11730773 - MER31A LTR ERV1 -335 150 52 4 1420 652 208 0 32 chr12 109527369 109527493 -11730037 - PB1D9 SINE Alu 0 120 1 4 1420 255 183 150 0 chr12 109527576 109527636 -11729894 - ID4_ SINE ID -13 70 2 5 1420 384 303 32 24 chr12 109527651 109527776 -11729754 - ID_B1 SINE B4 -16 208 83 5 1420 244 253 80 0 chr12 109527709 109527784 -11729746 - MT2B2 LTR ERVL -346 238 158 5 1420 950 191 0 0 chr12 109528577 109528724 -11728806 + B1_Mur3 SINE Alu 2 148 -1 5 1420 181 377 13 0 chr12 109529140 109529217 -11728313 - MIR SINE MIR -120 142 65 5 1420 315 241 0 0 chr12 109529246 109529329 -11728201 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 1420 505 316 29 17 chr12 109529346 109529520 -11728010 + B4A SINE B4 3 178 -114 5 1420 198 71 0 0 chr12 109530956 109530984 -11726546 + (GGATG)n Simple_repeat Simple_repeat 1 28 0 5 1420 844 133 29 15 chr12 109531572 109531709 -11725821 - B1_Mur4 SINE Alu -11 139 1 5 1420 1181 68 0 0 chr12 109531855 109532001 -11725529 - B1_Mus2 SINE Alu 0 147 2 5 1420 198 87 43 21 chr12 109533282 109533329 -11724201 + (CCTA)n Simple_repeat Simple_repeat 4 51 0 6 1420 1843 118 18 12 chr12 109533430 109533748 -11723782 + ORR1A4 LTR MaLR 3 353 -41 6 1420 1234 54 0 0 chr12 109533748 109533895 -11723635 + B1_Mus2 SINE Alu 1 147 0 6 1420 1456 74 26 0 chr12 109533923 109534113 -11723417 + B2_Mm2 SINE B2 1 195 0 6 1420 1791 134 118 6 chr12 109534183 109534247 -11723283 + ORR1B2 LTR MaLR 2 66 -301 6 1420 2551 89 3 0 chr12 109534247 109534572 -11722958 + ORR1A2 LTR MaLR 1 326 -1 6 1420 1791 134 118 6 chr12 109534572 109534836 -11722694 + ORR1B2 LTR MaLR 67 367 0 6 1420 369 202 137 11 chr12 109535433 109535528 -11722002 + B3A SINE B2 80 186 -12 6 1420 459 0 0 0 chr12 109535528 109535579 -11721951 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 6 1420 211 280 53 21 chr12 109535648 109535743 -11721787 + PB1D9 SINE Alu 23 120 0 6 1420 842 245 50 0 chr12 109535754 109535954 -11721576 - ID_B1 SINE B4 -12 212 3 6 1420 858 169 0 51 chr12 109536182 109536338 -11721192 - B1_Mus1 SINE Alu 0 148 1 7 1420 184 296 93 0 chr12 109536750 109536804 -11720726 - MIRc SINE MIR -112 156 98 7 1420 1714 124 167 18 chr12 109536804 109536981 -11720549 - ORR1B1 LTR MaLR -8 386 197 7 1420 2338 71 55 0 chr12 109536981 109537289 -11720241 + ORR1A2 LTR MaLR 1 325 -2 7 1420 1714 124 167 18 chr12 109537289 109537447 -11720083 - ORR1B1 LTR MaLR -198 196 1 7 1420 590 269 132 0 chr12 109537491 109537688 -11719842 - ID_B1 SINE B4 0 224 2 7 1420 797 237 19 43 chr12 109537688 109537889 -11719641 + B3 SINE B2 20 215 -1 7 1420 671 165 33 92 chr12 109537909 109538062 -11719468 + B1_Mur3 SINE Alu 5 148 -1 7 1420 215 61 30 0 chr12 109538083 109538116 -11719414 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1420 449 268 17 184 chr12 109538118 109538183 -11719347 - RSINE1 SINE B4 -16 149 106 7 1420 1591 42 16 0 chr12 109538183 109538373 -11719157 - B2_Mm2 SINE B2 -1 194 2 7 1420 449 268 17 184 chr12 109538373 109538481 -11719049 - RSINE1 SINE B4 -60 105 5 7 1420 384 178 0 0 chr12 109538493 109538566 -11718964 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 8 1420 734 152 14 0 chr12 109538598 109538736 -11718794 + (CATATA)n Simple_repeat Simple_repeat 3 142 0 8 1420 551 170 53 0 chr12 109538754 109538848 -11718682 - B1_Mur2 SINE Alu -48 101 3 8 1420 686 203 0 0 chr12 109538881 109538999 -11718531 - PB1D9 SINE Alu -2 118 1 8 1420 816 210 154 11 chr12 109539004 109539192 -11718338 - B3 SINE B2 -1 215 1 8 1420 25 0 0 0 chr12 109539258 109539283 -11718247 + AT_rich Low_complexity Low_complexity 1 25 0 8 1420 286 116 0 0 chr12 109539898 109539941 -11717589 + B3A SINE B2 4 46 -152 8 1420 1074 42 0 0 chr12 109540021 109540164 -11717366 - B1_Mus1 SINE Alu 0 148 6 8 1420 355 333 18 0 chr12 109540170 109540284 -11717246 + B3A SINE B2 57 172 -26 8 1420 1291 27 0 0 chr12 109540307 109540454 -11717076 - B1_Mus2 SINE Alu 0 147 1 8 1420 1240 41 0 0 chr12 109540463 109540608 -11716922 - B1_Mus1 SINE Alu -2 146 2 8 1420 857 179 5 21 chr12 109540613 109540803 -11716727 - RMER1B Other Other -344 722 447 9 1420 329 230 184 0 chr12 109540837 109540924 -11716606 - RSINE1 SINE B4 -56 109 7 9 1420 1168 49 28 0 chr12 109540961 109541103 -11716427 + B1_Mus1 SINE Alu 2 147 -1 9 1420 1203 193 14 5 chr12 109541611 109541819 -11715711 + B3 SINE B2 2 211 -5 9 1420 207 0 0 0 chr12 109541882 109541905 -11715625 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9 1420 495 0 0 0 chr12 109541915 109541970 -11715560 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1420 373 275 101 0 chr12 109541971 109542080 -11715450 - RSINE1 SINE B4 -44 121 2 9 1420 527 287 83 19 chr12 109542089 109542289 -11715241 - B4 SINE B4 -59 233 20 9 1420 300 331 94 0 chr12 109542998 109543158 -11714372 - L1MCb LINE L1 -5641 404 230 9 1420 1057 62 27 27 chr12 109545211 109545359 -11712171 - B1_Mus1 SINE Alu 0 148 1 9 1420 239 364 45 32 chr12 109545365 109545521 -11712009 - MamGypLTR1b LTR Gypsy -439 343 186 1 1420 189 0 0 0 chr12 109545838 109545859 -11711671 + (CAGC)n Simple_repeat Simple_repeat 3 23 0 1 1420 225 0 0 0 chr12 109547211 109547236 -11710294 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1420 372 274 81 0 chr12 109547350 109547474 -11710056 - MIR SINE MIR -47 215 82 1 1420 225 232 47 13 chr12 109547556 109547644 -11709886 - L2c LINE L2 -80 3307 3202 1 1420 424 316 0 0 chr12 109547919 109548055 -11709475 + G-rich Low_complexity Low_complexity 1 136 0 1 1420 251 317 0 80 chr12 109549415 109549528 -11708002 + MIRc SINE MIR 40 143 -125 1 1420 226 318 81 12 chr12 109549604 109549690 -11707840 - L2a LINE L2 -64 3362 3271 1 1420 299 284 7 0 chr12 109551058 109551213 -11706317 + CT-rich Low_complexity Low_complexity 1 156 0 1 1420 309 51 0 0 chr12 109551225 109551264 -11706266 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1420 394 286 31 70 chr12 109551267 109551395 -11706135 - ID_B1 SINE B4 -22 202 80 1 1420 235 302 95 90 chr12 109551506 109551717 -11705813 - LTR33A LTR ERVL -53 467 256 1 1420 396 274 18 131 chr12 109552209 109552282 -11705248 + B1F1 SINE Alu 1 61 -88 1 1420 1164 118 0 36 chr12 109552282 109552476 -11705054 + B2_Mm2 SINE B2 3 189 -6 1 1420 396 274 18 131 chr12 109552476 109552570 -11704960 + B1F1 SINE Alu 62 149 0 1 1420 753 193 21 0 chr12 109552581 109552721 -11704809 + B1_Mur2 SINE Alu 6 148 -1 1 1420 484 312 37 26 chr12 109552739 109552930 -11704600 + B3A SINE B2 1 193 -5 1 1420 185 65 0 31 chr12 109553269 109553301 -11704229 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1420 1609 41 0 40 chr12 109553302 109553503 -11704027 - B2_Mm1t SINE B2 0 193 1 1 1420 525 230 9 0 chr12 109553593 109553609 -11703921 - B1_Mur2 SINE Alu -35 114 99 1 1420 638 0 0 25 chr12 109553609 109553688 -11703842 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1 1420 525 230 9 0 chr12 109553688 109553784 -11703746 - B1_Mur2 SINE Alu -51 98 2 1 1420 300 30 91 0 chr12 109553808 109553874 -11703656 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1420 287 417 9 44 chr12 109554393 109554619 -11702911 + MIRc SINE MIR 48 265 -3 1 1420 729 138 23 15 chr12 109555870 109556002 -11701528 - URR1B DNA MER1_type 0 225 93 1 1420 369 309 16 0 chr12 109557811 109557864 -11699666 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 1 1420 1125 81 111 50 chr12 109557864 109558045 -11699485 + B2_Mm2 SINE B2 2 193 -2 1 1420 369 309 16 0 chr12 109558045 109558114 -11699416 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 1 1420 1237 47 0 13 chr12 109559452 109559602 -11697928 + B1_Mus1 SINE Alu 1 148 0 1 1420 460 287 85 8 chr12 109560619 109560749 -11696781 + B1F SINE Alu 1 140 -9 1 1420 1200 61 7 0 chr12 109560749 109560895 -11696635 + B1_Mus1 SINE Alu 1 148 0 1 1420 234 0 0 0 chr12 109560895 109560921 -11696609 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1420 543 56 0 0 chr12 109560949 109561020 -11696510 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1420 594 105 0 0 chr12 109561020 109561125 -11696405 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 1420 708 214 0 0 chr12 109561498 109561676 -11695854 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1420 744 274 92 30 chr12 109561681 109561952 -11695578 - B4A SINE B4 0 292 5 1 1420 531 239 26 0 chr12 109561967 109562084 -11695446 - PB1D9 SINE Alu 0 120 1 1 1420 234 342 69 17 chr12 109562270 109562386 -11695144 - B4 SINE B4 -170 122 1 1 1420 324 0 0 0 chr12 109562402 109562438 -11695092 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 1420 1337 86 5 26 chr12 109562496 109562688 -11694842 - B2_Mm2 SINE B2 -6 189 2 1 1420 214 29 0 54 chr12 109562688 109562725 -11694805 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1420 350 113 0 0 chr12 109562727 109562780 -11694750 - B2_Mm2 SINE B2 -141 54 2 1 1420 282 29 0 0 chr12 109562788 109562823 -11694707 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 1 1420 1252 41 0 7 chr12 109562823 109562966 -11694564 - B1_Mm SINE Alu 0 147 5 1 1420 951 171 0 20 chr12 109562968 109563117 -11694413 - B1_Mur2 SINE Alu 0 149 4 1 1420 186 71 0 0 chr12 109563130 109563158 -11694372 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1420 1408 55 60 11 chr12 109563280 109563464 -11694066 - B2_Mm2 SINE B2 -1 194 2 1 1420 687 25 0 0 chr12 109563519 109563600 -11693930 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1420 1050 230 29 0 chr12 109563921 109564130 -11693400 + B3 SINE B2 1 215 -1 1 1420 405 0 0 0 chr12 109565224 109565269 -11692261 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1420 405 0 0 0 chr12 109566526 109566571 -11690959 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1420 22 0 0 0 chr12 109567704 109567726 -11689804 + AT_rich Low_complexity Low_complexity 1 22 0 1 1420 213 153 81 107 chr12 109568104 109568185 -11689345 + MIRc SINE MIR 77 162 -100 1 1420 2273 176 16 40 chr12 109568707 109569132 -11688398 + MTD LTR MaLR 5 419 0 1 1420 1698 70 204 0 chr12 109569167 109569422 -11688108 + MTB LTR MaLR 92 398 -2 1 1420 297 175 70 70 chr12 109569428 109569491 -11688039 + PB1D9 SINE Alu 34 97 -23 1 1420 207 0 0 0 chr12 109569491 109569514 -11688016 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1420 297 175 70 70 chr12 109569514 109569536 -11687994 + PB1D9 SINE Alu 98 119 -1 1 1420 1282 180 5 0 chr12 109569547 109569753 -11687777 - B3 SINE B2 -8 208 2 1 1420 448 311 70 116 chr12 109569827 109570111 -11687419 + B4 SINE B4 2 272 -20 1 1420 498 287 171 43 chr12 109570140 109570398 -11687132 + B4A SINE B4 2 292 0 1 1420 268 311 0 75 chr12 109570896 109570976 -11686554 - ID4_ SINE ID -8 75 2 1 1420 183 80 0 0 chr12 109570978 109571003 -11686527 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1420 287 286 29 125 chr12 109571003 109571139 -11686391 - ID_B1 SINE B4 -10 214 92 1 1420 299 225 5 108 chr12 109572394 109572588 -11684942 + G-rich Low_complexity Low_complexity 4 177 0 1 1420 414 286 81 13 chr12 109573009 109573158 -11684372 - MIR SINE MIR -87 175 17 1 1420 217 135 0 26 chr12 109573311 109573349 -11684181 + CT-rich Low_complexity Low_complexity 5 41 0 1 1420 872 160 14 20 chr12 109573361 109573508 -11684022 - B1_Mur3 SINE Alu -2 147 2 1 1420 335 276 99 30 chr12 109573862 109573993 -11683537 + L2a LINE L2 3287 3426 0 1 1420 218 250 0 0 chr12 109574573 109574617 -11682913 + GA-rich Low_complexity Low_complexity 1 44 0 1 1420 853 272 53 14 chr12 109574618 109574901 -11682629 - L1MB7 LINE L1 -41 6143 5850 1 1420 2023 192 58 5 chr12 109574901 109575294 -11682236 - MTD LTR MaLR 0 419 6 1 1421 257 0 30 0 chr12 109576217 109576250 -11681280 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1421 1254 35 0 0 chr12 109576250 109576394 -11681136 - B1_Mus1 SINE Alu -4 144 1 1 1421 414 0 0 0 chr12 109577572 109577618 -11679912 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1421 659 156 331 62 chr12 109578090 109578192 -11679338 - URR1A DNA MER1_type 0 226 110 1 1421 920 133 34 27 chr12 109578192 109578339 -11679191 - B1_Mus1 SINE Alu 0 148 1 1 1421 659 156 331 62 chr12 109578339 109578414 -11679116 - URR1A DNA MER1_type -117 109 1 1 1421 342 319 190 6 chr12 109578811 109579127 -11678403 + L2 LINE L2 2706 3079 -340 1 1421 279 0 0 0 chr12 109579209 109579240 -11678290 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1421 252 0 0 0 chr12 109579240 109579268 -11678262 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1421 692 272 108 65 chr12 109579277 109579556 -11677974 - B4A SINE B4 0 292 2 1 1421 480 200 196 75 chr12 109579658 109579831 -11677699 - ID_B1 SINE B4 -28 196 3 1 1421 270 314 39 4 chr12 109581559 109581690 -11675840 + MIR SINE MIR 86 232 -36 1 1421 530 222 0 9 chr12 109581771 109581880 -11675650 + B1_Mur1 SINE Alu 42 149 0 1 1421 265 299 90 26 chr12 109582785 109582974 -11674556 + YREP_Mm Unknown Unknown 114 314 -1498 1 1421 922 281 14 0 chr12 109582834 109583055 -11674475 - ID_B1 SINE B4 0 224 1 1 1421 387 335 61 25 chr12 109583174 109583370 -11674160 - MIR SINE MIR -12 250 48 1 1421 225 271 23 12 chr12 109584196 109584282 -11673248 - L1MB5 LINE L1 -109 6065 5979 1 1421 291 263 17 17 chr12 109584689 109584805 -11672725 - L1ME2z LINE L1 0 6184 6069 1 1421 461 324 107 22 chr12 109584808 109585144 -11672386 - L1ME2z LINE L1 -480 5964 5587 1 1421 482 278 0 36 chr12 109585274 109585386 -11672144 + PB1D10 SINE Alu 9 116 -1 1 1421 741 134 0 56 chr12 109585424 109585550 -11671980 - B1_Mur2 SINE Alu 0 149 31 1 1421 1586 43 11 0 chr12 109586024 109586212 -11671318 - B2_Mm1a SINE B2 -2 191 2 1 1421 642 289 26 13 chr12 109586978 109587132 -11670398 + RSINE1 SINE B4 2 157 -8 1 1421 378 0 0 0 chr12 109587149 109587191 -11670339 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1421 1410 66 0 0 chr12 109587515 109588050 -11669480 + (CAG)n Simple_repeat Simple_repeat 1 535 0 1 1421 844 189 8 200 chr12 109588420 109588685 -11668845 + B3 SINE B2 1 214 -2 1 1421 643 296 38 34 chr12 109590392 109590630 -11666900 - MLT1J LTR MaLR -43 469 231 1 1421 1165 263 29 0 chr12 109592124 109592405 -11665125 + B4 SINE B4 2 290 -2 1 1421 570 143 61 0 chr12 109593062 109593160 -11664370 - PB1D9 SINE Alu -7 113 10 1 1421 422 227 21 0 chr12 109593076 109593173 -11664357 - ID_B1 SINE B4 -49 175 77 1 1421 1721 26 0 0 chr12 109593173 109593365 -11664165 - B2_Mm1a SINE B2 -1 192 1 1 1421 1248 174 20 0 chr12 109594332 109594533 -11662997 + B3 SINE B2 3 207 -9 1 1421 317 260 26 0 chr12 109594622 109594699 -11662831 + ID4 SINE ID 3 81 -2 1 1421 340 329 9 9 chr12 109594706 109594856 -11662674 - L1MB3 LINE L1 -41 6142 5992 2 1421 1242 128 0 0 chr12 109596674 109597158 -11660372 + (TG)n Simple_repeat Simple_repeat 1 484 0 2 1421 1378 77 28 0 chr12 109597370 109597551 -11659979 - B2_Mm2 SINE B2 -8 187 2 2 1421 225 272 179 0 chr12 109598373 109598464 -11659066 + MIRm SINE MIR 76 179 -89 2 1421 693 284 158 36 chr12 109598937 109599273 -11658257 - MTE2b LTR MaLR -2 377 1 2 1421 201 74 0 0 chr12 109599542 109599569 -11657961 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 2 1421 259 327 10 10 chr12 109599616 109599718 -11657812 + C-rich Low_complexity Low_complexity 1 102 0 2 1421 674 324 40 14 chr12 109600173 109600449 -11657081 + L2b LINE L2 3093 3375 0 2 1421 600 14 0 0 chr12 109600681 109600750 -11656780 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1421 183 336 204 27 chr12 109601919 109602066 -11655464 + MIRb SINE MIR 34 206 -62 2 1421 183 100 0 0 chr12 109602778 109602808 -11654722 + (G)n Simple_repeat Simple_repeat 1 30 0 2 1421 1078 124 60 27 chr12 109603340 109603523 -11654007 - B2_Mm2 SINE B2 -3 192 4 2 1421 549 42 0 0 chr12 109603909 109603981 -11653549 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1421 279 0 0 0 chr12 109603981 109604011 -11653519 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1421 198 0 0 0 chr12 109604138 109604160 -11653370 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1421 4754 154 62 76 chr12 109604672 109605584 -11651946 - RMER19B LTR ERVK 0 902 3 2 1421 1800 158 14 35 chr12 109606575 109606922 -11650608 - ORR1D1 LTR MaLR -34 340 1 2 1421 263 283 0 80 chr12 109607154 109607254 -11650276 - MER81 DNA AcHobo -21 93 2 2 1421 787 102 8 8 chr12 109607485 109607614 -11649916 + (GGA)n Simple_repeat Simple_repeat 2 130 0 2 1421 1248 114 23 0 chr12 109608153 109608328 -11649202 + B2_Mm1t SINE B2 1 179 -14 2 1421 325 99 351 9 chr12 109608413 109608524 -11649006 + B2_Mm2 SINE B2 47 195 0 2 1421 196 309 24 12 chr12 109608935 109609017 -11648513 + MIR SINE MIR 35 117 -145 2 1421 247 266 16 0 chr12 109611074 109611138 -11646392 + 4.5SRNA scRNA scRNA 24 88 -6 2 1421 349 205 116 35 chr12 109611081 109611167 -11646363 + PB1D10 SINE Alu 35 127 0 2 1421 234 0 0 0 chr12 109611214 109611240 -11646290 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1421 186 279 30 61 chr12 109611691 109611790 -11645740 - MIRc SINE MIR -119 149 54 2 1421 189 369 28 28 chr12 109612119 109612225 -11645305 + MIRc SINE MIR 47 152 -116 2 1421 328 264 37 19 chr12 109612409 109612517 -11645013 + MIRb SINE MIR 4 113 -155 2 1421 662 109 9 0 chr12 109614438 109614548 -11642982 + (TCC)n Simple_repeat Simple_repeat 1 111 0 2 1421 1368 80 16 0 chr12 109614553 109614741 -11642789 - B2_Mm2 SINE B2 -4 191 1 2 1421 326 258 10 61 chr12 109615889 109615933 -11641597 - HAL1-3A_ME LINE L1 -788 2070 2030 2 1421 589 252 12 47 chr12 109615933 109616104 -11641426 - RSINE1 SINE B4 0 165 1 2 1421 326 258 10 61 chr12 109616104 109616158 -11641372 - HAL1-3A_ME LINE L1 -829 2029 1977 2 1421 240 191 21 0 chr12 109616253 109616300 -11641230 - RSINE1 SINE B4 -112 53 6 2 1421 225 254 18 0 chr12 109616745 109616800 -11640730 - MLT1I LTR MaLR -256 155 100 2 1421 360 0 0 0 chr12 109616832 109616872 -11640658 + (TAG)n Simple_repeat Simple_repeat 2 41 0 2 1421 789 224 120 2 chr12 109617095 109617323 -11640207 - L1M2 LINE L1 -531 5769 5492 2 1421 345 82 0 0 chr12 109617360 109617409 -11640121 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1421 204 236 18 18 chr12 109617420 109617476 -11640054 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1421 252 278 34 97 chr12 109617476 109617651 -11639879 - RSINE1 SINE B4 0 165 2 2 1421 566 306 41 1 chr12 109617651 109617881 -11639649 - L1M2 LINE L1 -830 5482 5212 2 1421 546 173 17 75 chr12 109617887 109618007 -11639523 - B1_Mus1 SINE Alu 0 120 9 2 1421 391 279 106 23 chr12 109617890 109618022 -11639508 - B4 SINE B4 -69 223 81 2 1421 596 203 74 15 chr12 109618040 109618175 -11639355 - B1F SINE Alu -6 143 1 2 1421 203 138 0 0 chr12 109618203 109618232 -11639298 + (TCTCCC)n Simple_repeat Simple_repeat 5 33 0 2 1421 504 278 140 12 chr12 109618232 109618403 -11639127 - B3A SINE B2 -5 193 1 2 1421 742 289 50 66 chr12 109618469 109618788 -11638742 - MER2 DNA MER2_type -31 314 1 2 1421 450 273 13 40 chr12 109618826 109618975 -11638555 - L1M2 LINE L1 -932 5211 5067 2 1421 618 274 81 27 chr12 109618979 109619238 -11638292 + L1MA6 LINE L1 5750 6022 -278 2 1421 227 281 0 42 chr12 109619281 109619400 -11638130 + G-rich Low_complexity Low_complexity 2 115 0 2 1421 320 204 134 14 chr12 109620197 109620294 -11637236 + PB1D7 SINE Alu 13 127 0 2 1421 710 273 50 5 chr12 109620433 109620632 -11636898 + B4A SINE B4 2 209 -83 2 1421 922 231 34 52 chr12 109620975 109621383 -11636147 - RMER12 LTR ERVK -2 1320 975 2 1421 3838 134 42 17 chr12 109621392 109621738 -11635792 - RMER12 LTR ERVK -584 738 382 2 1421 1160 130 32 0 chr12 109621738 109621923 -11635607 - B2_Mm2 SINE B2 -3 192 2 2 1421 3838 134 42 17 chr12 109621923 109622296 -11635234 - RMER12 LTR ERVK -941 381 2 2 1421 238 284 30 0 chr12 109622894 109622961 -11634569 + B4 SINE B4 1 69 -223 2 1421 362 232 208 33 chr12 109623826 109624009 -11633521 + ID_B1 SINE B4 5 219 -5 2 1421 249 281 0 12 chr12 109624082 109624165 -11633365 - L1MB2 LINE L1 -156 6015 5934 2 1421 270 333 0 27 chr12 109624437 109624548 -11632982 - L1M4 LINE L1 -708 5476 5369 2 1421 199 328 17 0 chr12 109624562 109624620 -11632910 + MIR SINE MIR 117 175 -87 2 1421 599 291 38 108 chr12 109625537 109625880 -11631650 + ORR1E LTR MaLR 1 319 -40 2 1421 250 287 58 29 chr12 109626431 109626535 -11630995 - MLT1D LTR MaLR -293 212 106 2 1421 279 0 0 0 chr12 109626559 109626590 -11630940 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1421 216 0 0 0 chr12 109626938 109626962 -11630568 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1421 678 329 46 23 chr12 109626975 109627236 -11630294 - B4A SINE B4 -11 281 15 2 1421 508 196 9 9 chr12 109627424 109627532 -11629998 + PB1 SINE Alu 18 125 -2 2 1421 362 287 91 67 chr12 109627634 109627843 -11629687 + MER2 DNA MER2_type 127 340 -5 2 1421 803 276 89 11 chr12 109628275 109628546 -11628984 + B4A SINE B4 1 292 0 2 1421 27 0 0 0 chr12 109628676 109628703 -11628827 + AT_rich Low_complexity Low_complexity 1 27 0 2 1421 198 256 73 13 chr12 109628785 109628884 -11628646 + MIRc SINE MIR 35 140 -128 2 1421 598 158 26 29 chr12 109628918 109629191 -11628339 + (CA)n Simple_repeat Simple_repeat 1 271 0 2 1421 342 61 0 0 chr12 109629263 109629312 -11628218 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 2 1421 672 275 41 10 chr12 109629505 109629700 -11627830 + MTE2a LTR MaLR 9 209 -170 2 1421 188 163 0 44 chr12 109629957 109630002 -11627528 + L2c LINE L2 3314 3356 -31 2 1421 342 292 10 10 chr12 109632367 109632464 -11625066 + PB1 SINE Alu 26 122 -5 2 1421 26 0 0 0 chr12 109632580 109632606 -11624924 + AT_rich Low_complexity Low_complexity 1 26 0 2 1421 489 267 27 75 chr12 109632614 109632760 -11624770 - RSINE1 SINE B4 0 165 27 2 1421 613 227 40 80 chr12 109633560 109633785 -11623745 + B4A SINE B4 37 252 -40 2 1421 192 362 53 26 chr12 109636494 109636684 -11620846 + L3 LINE CR1 3495 3689 -800 2 1421 1573 31 0 0 chr12 109636708 109636900 -11620630 - B2_Mm1a SINE B2 0 193 2 2 1421 1426 129 4 4 chr12 109638701 109638926 -11618604 + URR1B DNA MER1_type 1 225 0 2 1421 181 250 37 37 chr12 109639485 109639539 -11617991 - MER5A DNA MER1_type -127 62 9 2 1421 324 0 0 0 chr12 109640227 109640263 -11617267 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1421 416 258 57 24 chr12 109640264 109640387 -11617143 - B1_Mur1 SINE Alu -22 127 1 2 1421 823 223 86 0 chr12 109640625 109640822 -11616708 - ID_B1 SINE B4 -7 217 4 2 1421 606 289 59 47 chr12 109640874 109641116 -11616414 - RLTR15 LTR ERVK -17 342 93 2 1421 432 0 0 0 chr12 109641116 109641164 -11616366 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1421 606 289 59 47 chr12 109641164 109641259 -11616271 - RLTR15 LTR ERVK -267 92 1 2 1421 1112 48 0 13 chr12 109641404 109641417 -11616113 - B1_Mus1 SINE Alu -1 147 136 2 1421 376 0 74 0 chr12 109641417 109641471 -11616059 + (TTTTG)n Simple_repeat Simple_repeat 1 58 0 2 1421 1112 48 0 13 chr12 109641471 109641606 -11615924 - B1_Mus1 SINE Alu -13 135 1 2 1421 639 308 11 0 chr12 109641716 109641898 -11615632 - L1M3 LINE L1 -414 5769 5586 2 1421 243 267 142 9 chr12 109642583 109642689 -11614841 + MIR SINE MIR 30 149 -59 2 1421 320 261 0 8 chr12 109642816 109642936 -11614594 + (CA)n Simple_repeat Simple_repeat 2 120 0 2 1421 495 268 0 0 chr12 109642949 109643128 -11614402 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1421 229 314 0 0 chr12 109643131 109643182 -11614348 + (CACG)n Simple_repeat Simple_repeat 4 54 0 2 1421 592 284 42 50 chr12 109643794 109644014 -11613516 - B4 SINE B4 -32 260 39 2 1421 269 237 29 15 chr12 109644267 109644404 -11613126 + CT-rich Low_complexity Low_complexity 1 139 0 2 1421 340 297 101 7 chr12 109644404 109644543 -11612987 - L1MEf LINE L1 -5175 1025 874 2 1421 229 276 35 103 chr12 109644578 109644752 -11612778 - L1MB7 LINE L1 -92 6092 5931 2 1421 602 297 73 16 chr12 109644766 109645089 -11612441 - ORR1E LTR MaLR 0 379 8 2 1421 508 299 35 61 chr12 109645107 109645536 -11611994 - L1MB7 LINE L1 -246 5918 5647 2 1421 477 181 0 0 chr12 109645557 109645690 -11611840 + GA-rich Low_complexity Low_complexity 1 133 0 2 1421 216 217 0 0 chr12 109645703 109645795 -11611735 + GA-rich Low_complexity Low_complexity 2 93 0 2 1421 417 239 117 22 chr12 109645808 109645945 -11611585 - B3 SINE B2 -66 150 1 2 1421 474 314 125 29 chr12 109645946 109646329 -11611201 - L1MB7 LINE L1 -5509 627 208 2 1421 556 194 37 0 chr12 109646346 109646454 -11611076 - PB1D9 SINE Alu -6 114 3 2 1421 231 36 0 0 chr12 109646739 109646767 -11610763 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 2 1421 1174 277 83 25 chr12 109646767 109647174 -11610356 - Lx8 LINE L1 -260 7213 6783 2 1421 193 28 53 53 chr12 109647811 109647849 -11609681 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 2 1421 330 67 0 0 chr12 109647874 109647919 -11609611 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1421 453 36 0 0 chr12 109647952 109648007 -11609523 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1421 207 0 0 0 chr12 109648007 109648029 -11609501 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1421 405 0 0 0 chr12 109648082 109648127 -11609403 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1421 709 253 31 6 chr12 109648267 109648426 -11609104 - RSINE1 SINE B4 0 165 3 3 1421 200 35 35 0 chr12 109649911 109649940 -11607590 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 3 1421 402 211 73 73 chr12 109650859 109650880 -11606650 + MT2B LTR ERVL 135 155 -446 3 1421 716 144 76 0 chr12 109650880 109650998 -11606532 + B1_Mus2 SINE Alu 1 127 -20 3 1421 393 22 0 0 chr12 109651002 109651048 -11606482 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1421 1051 217 10 0 chr12 109651817 109652024 -11605506 - B3 SINE B2 -6 210 2 3 1421 414 0 0 0 chr12 109652604 109652650 -11604880 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1421 862 259 91 20 chr12 109652689 109652941 -11604589 + B4 SINE B4 9 278 -14 3 1421 270 286 47 9 chr12 109653220 109653326 -11604204 - MER94 DNA AcHobo 0 134 25 3 1421 213 39 0 0 chr12 109653575 109653601 -11603929 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1421 451 226 190 109 chr12 109653611 109653785 -11603745 + B3A SINE B2 11 198 0 3 1421 465 325 35 20 chr12 109654769 109654967 -11602563 + L3 LINE CR1 3648 3848 -641 3 1421 194 292 0 65 chr12 109655867 109655944 -11601586 + L3 LINE CR1 4354 4425 -64 3 1421 398 280 19 0 chr12 109656080 109656187 -11601343 - PB1D7 SINE Alu -7 113 5 3 1421 279 281 112 0 chr12 109656269 109656358 -11601172 - MLT1C LTR MaLR 0 467 369 3 1421 2938 59 26 3 chr12 109656434 109656823 -11600707 - MTB LTR MaLR 0 400 3 3 1421 567 43 0 0 chr12 109656824 109656894 -11600636 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1421 394 289 69 87 chr12 109656929 109657217 -11600313 - B4A SINE B4 -8 284 2 3 1421 958 271 45 36 chr12 109657218 109657610 -11599920 - L1MB3 LINE L1 -122 6061 5668 3 1421 189 107 0 0 chr12 109657823 109657851 -11599679 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 3 1421 195 129 0 0 chr12 109658022 109658053 -11599477 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 3 1421 522 46 0 0 chr12 109658650 109658715 -11598815 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 3 1421 753 134 29 22 chr12 109658744 109658881 -11598649 - B1_Mur3 SINE Alu 0 149 12 3 1421 298 272 75 81 chr12 109658881 109658899 -11598631 - B4 SINE B4 -62 225 72 3 1421 249 33 0 0 chr12 109661248 109661278 -11596252 + (CGG)n Simple_repeat Simple_repeat 1 30 0 3 1421 21 36 0 0 chr12 109661371 109661399 -11596131 + GC_rich Low_complexity Low_complexity 1 28 0 3 1421 409 250 18 0 chr12 109663925 109664218 -11593312 + (TG)n Simple_repeat Simple_repeat 1 298 0 3 1421 866 236 134 12 chr12 109664250 109664503 -11593027 - B4A SINE B4 -8 284 1 3 1421 570 252 8 0 chr12 109664562 109664693 -11592837 - RSINE1 SINE B4 -30 135 4 3 1421 189 51 77 0 chr12 109664694 109664733 -11592797 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 3 1421 986 24 8 0 chr12 109664744 109664870 -11592660 - B1_Mm SINE Alu 0 147 21 3 1421 24 32 0 0 chr12 109664871 109664902 -11592628 + AT_rich Low_complexity Low_complexity 1 31 0 3 1421 26 30 0 0 chr12 109665006 109665039 -11592491 + AT_rich Low_complexity Low_complexity 1 33 0 3 1421 564 289 46 51 chr12 109665043 109665240 -11592290 - B3A SINE B2 -2 196 1 3 1421 321 271 54 8 chr12 109665299 109665429 -11592101 - L1M4 LINE L1 -449 5729 5594 3 1421 396 234 43 86 chr12 109665939 109665952 -11591578 + B4 SINE B4 77 144 -148 3 1421 617 147 0 68 chr12 109665952 109666069 -11591461 + B1_Mur2 SINE Alu 2 110 -39 3 1421 291 278 8 87 chr12 109666222 109666348 -11591182 - PB1D10 SINE Alu 0 117 2 3 1421 305 280 118 8 chr12 109666406 109666525 -11591005 - RSINE1 SINE B4 -24 141 10 3 1421 281 26 26 0 chr12 109667065 109667103 -11590427 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1421 722 134 38 0 chr12 109667104 109667233 -11590297 - B1_Mur2 SINE Alu -17 132 1 3 1421 24 32 0 0 chr12 109667282 109667313 -11590217 + AT_rich Low_complexity Low_complexity 1 31 0 3 1421 192 200 0 0 chr12 109667330 109667370 -11590160 + (CGTG)n Simple_repeat Simple_repeat 4 43 0 3 1421 675 304 6 0 chr12 109667371 109667532 -11589998 - RSINE1 SINE B4 -2 163 2 3 1421 925 175 141 11 chr12 109668581 109668772 -11588758 + B3 SINE B2 1 216 0 3 1421 180 0 0 0 chr12 109668784 109668804 -11588726 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1421 1051 242 78 15 chr12 109669507 109669775 -11587755 + B4A SINE B4 8 292 0 3 1421 361 328 29 0 chr12 109669789 109669963 -11587567 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1421 207 0 0 0 chr12 109670234 109670257 -11587273 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1421 375 60 0 0 chr12 109672154 109672204 -11585326 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1421 459 293 109 6 chr12 109672261 109672436 -11585094 - MIR SINE MIR -37 225 33 3 1421 205 225 42 14 chr12 109672816 109672888 -11584642 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1421 407 186 26 26 chr12 109672895 109673126 -11584404 + (CATA)n Simple_repeat Simple_repeat 1 231 0 3 1421 213 288 91 0 chr12 109673946 109674012 -11583518 + ID2 SINE ID 12 83 0 3 1421 237 303 0 0 chr12 109674134 109674200 -11583330 - L1MB2 LINE L1 -6 6165 6100 3 1421 212 189 0 0 chr12 109675025 109675062 -11582468 + T-rich Low_complexity Low_complexity 1 37 0 3 1421 233 311 236 0 chr12 109676469 109676575 -11580955 - MamRep137 DNA TcMar? -197 247 117 3 1421 395 200 45 33 chr12 109677026 109677118 -11580412 + PB1D10 SINE Alu 14 103 -14 3 1421 548 40 13 0 chr12 109677207 109677282 -11580248 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 1421 215 31 0 30 chr12 109677418 109677451 -11580079 + (TTTTTG)n Simple_repeat Simple_repeat 6 37 0 3 1421 327 146 186 47 chr12 109677451 109677537 -11579993 - B1_Mur4 SINE Alu 0 150 53 3 1421 1108 146 47 0 chr12 109677646 109677817 -11579713 - B2_Mm1t SINE B2 -14 179 1 3 1421 1519 43 27 0 chr12 109677907 109678094 -11579436 + B2_Mm1a SINE B2 2 193 0 3 1421 1686 257 63 159 chr12 109680335 109681264 -11576266 + RCHARR1 DNA MER1_type 12 851 -123 3 1421 596 126 69 43 chr12 109681265 109681381 -11576149 + B1F2 SINE Alu 30 148 -1 3 1421 387 279 8 37 chr12 109681373 109681507 -11576023 + RCHARR1 DNA MER1_type 839 968 -6 3 1421 866 186 14 7 chr12 109682302 109682448 -11575082 - B1_Mur1 SINE Alu 0 149 3 3 1421 186 43 0 0 chr12 109683556 109683579 -11573951 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 3 1421 186 296 122 61 chr12 109683687 109683802 -11573728 - L4 LINE RTE -629 1400 1279 3 1421 1014 221 44 0 chr12 109684121 109684325 -11573205 + B3 SINE B2 1 213 -3 3 1421 382 289 48 2 chr12 109684672 109684789 -11572741 + PB1D10 SINE Alu 8 128 -21 3 1421 831 236 31 25 chr12 109686322 109686338 -11571192 - B3A SINE B2 0 198 184 3 1421 279 104 0 0 chr12 109686338 109686386 -11571144 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1421 831 236 31 25 chr12 109686386 109686565 -11570965 - B3A SINE B2 -15 183 2 3 1421 745 311 14 0 chr12 109687054 109687263 -11570267 - ID_B1 SINE B4 -11 213 2 3 1421 392 269 89 7 chr12 109687321 109687456 -11570074 - B1F SINE Alu -2 147 2 3 1421 378 357 118 17 chr12 109687539 109687827 -11569703 - Charlie1a DNA MER1_type -574 881 565 3 1421 372 158 0 0 chr12 109687845 109687921 -11569609 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1421 530 302 12 36 chr12 109687922 109688087 -11569443 - RSINE1 SINE B4 -1 164 4 3 1421 231 319 0 28 chr12 109688098 109688169 -11569361 - Charlie1a DNA MER1_type -894 561 493 3 1421 348 339 207 45 chr12 109688238 109688528 -11569002 - Charlie1a DNA MER1_type -1116 339 3 3 1421 281 344 112 29 chr12 109688591 109688906 -11568624 - L2c LINE L2 -50 3325 2987 3 1421 253 320 70 86 chr12 109689070 109689456 -11568074 - L2c LINE L2 -572 2847 2468 3 1421 482 152 11 0 chr12 109689497 109689589 -11567941 + (CA)n Simple_repeat Simple_repeat 1 93 0 3 1421 488 289 33 51 chr12 109690089 109690278 -11567252 - ORR1E LTR MaLR -194 176 1 3 1421 279 0 0 0 chr12 109690346 109690377 -11567153 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1421 720 198 6 20 chr12 109691126 109691482 -11566048 + (TG)n Simple_repeat Simple_repeat 1 350 0 3 1421 821 289 22 107 chr12 109691485 109691803 -11565727 - B4A SINE B4 0 292 2 3 1421 925 149 17 0 chr12 109692661 109692835 -11564695 + CT-rich Low_complexity Low_complexity 2 178 0 3 1421 799 136 0 8 chr12 109692841 109692967 -11564563 - B1_Mur2 SINE Alu -1 148 24 3 1421 306 125 0 0 chr12 109693263 109693311 -11564219 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1421 211 293 32 76 chr12 109694085 109694196 -11563334 - L2a LINE L2 -33 3393 3236 3 1421 245 254 0 95 chr12 109694473 109694491 -11563039 - B4 SINE B4 -200 92 26 3 1421 302 218 0 18 chr12 109694491 109694547 -11562983 - ID4_ SINE ID -4 79 25 3 1421 3927 131 62 46 chr12 109694557 109694905 -11562625 - RLTR17 LTR ERVK 0 692 330 3 1421 1240 54 0 0 chr12 109694905 109695052 -11562478 - B1_Mm SINE Alu 0 147 1 3 1421 3927 131 62 46 chr12 109695052 109695382 -11562148 - RLTR17 LTR ERVK -363 329 3 3 1421 471 48 0 0 chr12 109695650 109695712 -11561818 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1421 478 214 0 0 chr12 109696873 109696957 -11560573 - B4A SINE B4 0 292 209 3 1421 1781 178 64 12 chr12 109696972 109697171 -11560359 + ORR1D1 LTR MaLR 28 228 -146 3 1421 233 29 29 0 chr12 109697171 109697205 -11560325 + (CCTG)n Simple_repeat Simple_repeat 4 38 0 3 1421 1781 178 64 12 chr12 109697205 109697335 -11560195 + ORR1D1 LTR MaLR 229 372 -2 3 1421 493 279 54 13 chr12 109697352 109697501 -11560029 - B4A SINE B4 -136 156 2 3 1421 288 77 0 0 chr12 109697927 109697966 -11559564 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 3 1421 198 237 229 31 chr12 109698721 109698817 -11558713 - MIR SINE MIR -78 130 16 3 1421 872 168 7 20 chr12 109698886 109699012 -11558518 + B1_Mus1 SINE Alu 4 129 -19 3 1421 1391 87 11 0 chr12 109699012 109699197 -11558333 + B2_Mm1t SINE B2 5 191 -2 4 1421 872 168 7 20 chr12 109699197 109699216 -11558314 + B1_Mus1 SINE Alu 130 147 -1 3 1421 609 91 36 0 chr12 109699216 109699326 -11558204 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 4 1421 611 251 83 135 chr12 109699332 109699525 -11558005 + B3A SINE B2 1 183 -10 4 1421 3414 38 2 0 chr12 109699628 109700023 -11557507 - MTA_Mm LTR MaLR 0 396 1 4 1421 210 345 0 0 chr12 109700145 109700203 -11557327 - MIR SINE MIR -182 80 23 4 1421 304 255 17 136 chr12 109700257 109700375 -11557155 - L1M4b LINE L1 -3712 3622 3519 4 1421 264 276 66 44 chr12 109700380 109700471 -11557059 + RSINE1 SINE B4 57 149 -16 4 1421 396 0 0 0 chr12 109700475 109700519 -11557011 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1421 1603 199 79 12 chr12 109700556 109700899 -11556631 - ORR1D1 LTR MaLR -4 417 7 4 1421 638 210 0 25 chr12 109702747 109702869 -11554661 + PB1D9 SINE Alu 2 120 0 4 1421 643 272 135 5 chr12 109702895 109703087 -11554443 + B4 SINE B4 9 225 -67 4 1421 247 114 70 14 chr12 109703113 109703184 -11554346 + CT-rich Low_complexity Low_complexity 5 79 0 4 1421 224 87 0 80 chr12 109703191 109703241 -11554289 + T-rich Low_complexity Low_complexity 3 48 0 4 1421 1271 48 0 0 chr12 109703242 109703389 -11554141 - B1_Mus1 SINE Alu -1 147 1 4 1421 848 221 49 51 chr12 109704076 109704333 -11553197 + MTE2a LTR MaLR 128 381 -15 4 1421 1038 20 26 13 chr12 109704818 109704969 -11552561 + (TG)n Simple_repeat Simple_repeat 1 153 0 4 1421 726 290 9 37 chr12 109705046 109705271 -11552259 - B3A SINE B2 -1 215 2 4 1421 277 350 49 7 chr12 109705312 109705456 -11552074 - MER2B DNA MER2_type -4 332 183 4 1421 243 0 0 0 chr12 109706013 109706040 -11551490 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1421 1127 217 242 36 chr12 109706119 109706491 -11551039 - MT2A LTR ERVL 0 601 158 4 1421 524 207 42 29 chr12 109706491 109706632 -11550898 + B1_Mm SINE Alu 2 150 0 4 1421 931 152 6 11 chr12 109706673 109706808 -11550722 + polypurine Low_complexity Low_complexity 1 136 0 4 1421 1056 50 0 53 chr12 109706808 109706998 -11550532 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1421 931 152 6 11 chr12 109706998 109707041 -11550489 + polypurine Low_complexity Low_complexity 137 178 0 4 1421 348 188 0 0 chr12 109707028 109707097 -11550433 + GA-rich Low_complexity Low_complexity 1 69 0 4 1421 535 119 48 0 chr12 109707099 109707183 -11550347 - MT2A LTR ERVL -445 88 1 4 1422 188 86 29 0 chr12 109707333 109707368 -11550162 + (TCCCC)n Simple_repeat Simple_repeat 3 38 0 4 1422 838 275 80 21 chr12 109707437 109707675 -11549855 - MTE2b LTR MaLR -127 252 1 4 1422 1955 221 40 40 chr12 109707710 109708209 -11549321 - L1MC3 LINE L1 -1957 5828 5324 4 1422 1389 41 6 0 chr12 109708209 109708381 -11549149 - L1Md_T LINE L1 -1 6581 6409 4 1422 1955 251 48 63 chr12 109708381 109708609 -11548921 - L1MC3 LINE L1 -823 5323 5101 4 1422 1008 251 0 5 chr12 109708629 109708837 -11548693 - B3 SINE B2 -9 207 1 4 1422 916 327 41 31 chr12 109708838 109709252 -11548278 + MTD LTR MaLR 2 419 0 4 1422 380 323 7 36 chr12 109709287 109709425 -11548105 + ID_B1 SINE B4 6 139 -85 4 1422 486 145 44 25 chr12 109709457 109709776 -11547754 + GA-rich Low_complexity Low_complexity 1 324 0 4 1422 627 271 94 14 chr12 109710810 109711023 -11546507 + B4A SINE B4 59 288 -4 4 1422 184 100 0 48 chr12 109711036 109711078 -11546452 + (CACAC)n Simple_repeat Simple_repeat 1 40 0 4 1422 508 140 40 23 chr12 109711138 109711314 -11546216 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1422 217 167 28 47 chr12 109711312 109711419 -11546111 + (CATAC)n Simple_repeat Simple_repeat 1 105 0 4 1422 485 137 53 6 chr12 109711414 109711583 -11545947 + (CA)n Simple_repeat Simple_repeat 1 177 0 4 1422 485 269 263 11 chr12 109711713 109711998 -11545532 - MER54A LTR ERVL -9 892 536 4 1422 1095 220 168 48 chr12 109712008 109712164 -11545366 - MTE2a LTR MaLR -2 377 198 4 1422 618 14 0 0 chr12 109712164 109712235 -11545295 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1422 1095 220 168 48 chr12 109712235 109712412 -11545118 - MTE2a LTR MaLR -182 197 4 4 1422 1182 62 7 0 chr12 109712412 109712558 -11544972 + B1_Mm SINE Alu 1 147 0 4 1422 323 342 145 25 chr12 109712638 109712914 -11544616 - MER73 LTR ERVL -300 344 36 4 1422 717 138 127 30 chr12 109713020 109713142 -11544388 + B1_Mus2 SINE Alu 1 138 -9 4 1422 561 55 0 0 chr12 109713142 109713215 -11544315 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 4 1422 717 138 127 30 chr12 109713215 109713226 -11544304 + B1_Mus2 SINE Alu 139 147 0 4 1422 22 0 0 0 chr12 109713640 109713662 -11543868 + AT_rich Low_complexity Low_complexity 1 22 0 4 1422 481 305 14 7 chr12 109713701 109713843 -11543687 - RSINE1 SINE B4 -20 145 3 4 1422 321 109 0 0 chr12 109713923 109713978 -11543552 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1422 585 286 14 0 chr12 109713982 109714122 -11543408 - RSINE1 SINE B4 -22 143 2 4 1422 310 250 90 11 chr12 109714126 109714215 -11543315 - L1M3 LINE L1 -767 5417 5322 4 1422 446 302 9 6 chr12 109714224 109714343 -11543187 - PB1D10 SINE Alu -21 128 7 4 1422 877 300 66 69 chr12 109714348 109714988 -11542542 - L1M3 LINE L1 -818 5322 4685 4 1422 956 202 140 93 chr12 109715022 109715301 -11542229 - MTD LTR MaLR -14 405 114 4 1422 445 290 8 22 chr12 109715302 109715314 -11542216 + ID_B1 SINE B4 80 207 -13 4 1422 806 136 17 0 chr12 109715314 109715432 -11542098 + B1_Mur4 SINE Alu 12 131 -19 4 1422 1161 22 0 0 chr12 109715443 109715579 -11541951 + (GGGAGA)n Simple_repeat Simple_repeat 4 139 0 4 1422 433 177 50 1 chr12 109715579 109715674 -11541856 - MTD LTR MaLR -295 101 1 4 1422 457 310 92 62 chr12 109715677 109716014 -11541516 - L1M3 LINE L1 -1532 4608 4262 4 1422 26 93 0 0 chr12 109716532 109716607 -11540923 + AT_rich Low_complexity Low_complexity 1 75 0 4 1422 1392 82 11 0 chr12 109716609 109716792 -11540738 - B2_Mm1t SINE B2 -7 186 2 4 1422 766 35 301 0 chr12 109716809 109716922 -11540608 - B1_Mm SINE Alu 0 147 1 4 1422 469 270 89 8 chr12 109716978 109717213 -11540317 - L1M3 LINE L1 -1953 4187 3934 4 1422 24 0 0 0 chr12 109717213 109717237 -11540293 + AT_rich Low_complexity Low_complexity 1 24 0 4 1422 408 20 0 0 chr12 109717273 109717322 -11540208 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1422 669 252 0 35 chr12 109717322 109717466 -11540064 - RSINE1 SINE B4 -24 141 3 4 1422 439 289 142 18 chr12 109717480 109717818 -11539712 - L1MD LINE L1 -2218 3928 3549 4 1422 711 278 21 75 chr12 109717802 109718280 -11539250 - L1M3 LINE L1 -2628 3512 3061 4 1422 238 36 0 0 chr12 109718494 109718522 -11539008 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1422 443 130 0 13 chr12 109718522 109718600 -11538930 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 4 1422 374 269 0 0 chr12 109718621 109718699 -11538831 - ID4 SINE ID -2 81 4 4 1422 182 205 156 78 chr12 109718983 109719073 -11538457 - L2a LINE L2 -252 3174 3078 4 1422 261 125 27 40 chr12 109719410 109719485 -11538045 + G-rich Low_complexity Low_complexity 4 77 0 4 1422 268 286 34 149 chr12 109719724 109719872 -11537658 + B1F SINE Alu 3 133 -16 4 1422 639 163 294 11 chr12 109719894 109720074 -11537456 - Lx5 LINE L1 0 7050 6820 4 1422 547 276 169 12 chr12 109720332 109720574 -11536956 + B4A SINE B4 1 280 -12 4 1422 238 152 17 17 chr12 109720601 109720661 -11536869 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1422 1339 96 21 0 chr12 109720684 109720872 -11536658 - B2_Mm1a SINE B2 -1 192 1 4 1422 871 262 48 5 chr12 109721973 109722180 -11535350 + B3 SINE B2 1 216 0 4 1422 250 296 34 65 chr12 109722505 109722637 -11534893 + MIR SINE MIR 70 207 -61 4 1422 291 104 0 0 chr12 109723549 109723597 -11533933 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1422 957 140 0 0 chr12 109723611 109723789 -11533741 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1422 1008 128 0 0 chr12 109723809 109723988 -11533542 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1422 240 329 67 60 chr12 109724675 109724824 -11532706 - MLT1A1 LTR MaLR -246 162 13 4 1422 351 0 0 0 chr12 109724892 109724931 -11532599 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1422 607 221 126 0 chr12 109724948 109725075 -11532455 - B1_Mur3 SINE Alu -6 143 1 4 1422 1506 285 94 17 chr12 109725109 109725570 -11531960 + RCHARR1 DNA MER1_type 1 497 -477 4 1422 766 212 43 100 chr12 109725570 109725780 -11531750 + B3A SINE B2 1 198 0 4 1422 487 245 31 43 chr12 109725776 109725938 -11531592 + RCHARR1 DNA MER1_type 481 640 -334 4 1422 551 267 102 59 chr12 109725899 109726187 -11531343 - MER20 DNA MER1_type -495 288 3 4 1422 351 121 0 0 chr12 109726840 109726898 -11530632 + (ATGGTG)n Simple_repeat Simple_repeat 4 61 0 4 1422 891 142 0 0 chr12 109727591 109727739 -11529791 + (GAA)n Simple_repeat Simple_repeat 1 148 0 4 1422 1152 175 50 0 chr12 109727748 109727948 -11529582 + B3 SINE B2 2 211 -5 4 1422 457 292 193 82 chr12 109729806 109730392 -11527138 - Zaphod2 DNA Tip100 -2776 748 98 4 1422 328 310 155 0 chr12 109730816 109730932 -11526598 - PB1D10 SINE Alu -11 138 5 4 1422 207 273 0 0 chr12 109730991 109731035 -11526495 + L2b LINE L2 3332 3375 0 4 1422 622 293 183 65 chr12 109731326 109731461 -11526069 - MTE2a LTR MaLR 0 379 202 4 1422 838 199 113 49 chr12 109731461 109731646 -11525884 + B3 SINE B2 1 197 -19 4 1422 622 293 183 65 chr12 109731646 109731849 -11525681 - MTE2a LTR MaLR -178 201 1 4 1422 219 340 55 28 chr12 109732455 109732564 -11524966 + L2a LINE L2 3314 3425 -1 4 1422 23 0 0 0 chr12 109732569 109732592 -11524938 + AT_rich Low_complexity Low_complexity 1 23 0 4 1422 420 20 0 0 chr12 109733049 109733098 -11524432 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1422 439 221 1 1 chr12 109733193 109733293 -11524237 - B4A SINE B4 -192 100 1 4 1422 225 0 0 0 chr12 109733466 109733491 -11524039 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1422 415 340 127 44 chr12 109733580 109733965 -11523565 + L1MCc LINE L1 49 465 -5958 4 1422 655 304 32 89 chr12 109734738 109734779 -11522751 + B4A SINE B4 6 44 -248 4 1422 2277 173 22 17 chr12 109734779 109735196 -11522334 + MTD LTR MaLR 1 419 0 4 1422 655 304 32 89 chr12 109735196 109735400 -11522130 + B4A SINE B4 45 236 -56 4 1422 368 97 16 0 chr12 109735733 109735795 -11521735 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1422 942 116 106 34 chr12 109735931 109736110 -11521420 + URR1A DNA MER1_type 35 226 0 4 1422 736 190 129 89 chr12 109736879 109737038 -11520492 - B3 SINE B2 -5 211 41 4 1422 1507 53 11 0 chr12 109737038 109737228 -11520302 + B2_Mm1t SINE B2 1 192 -1 5 1422 736 190 129 89 chr12 109737228 109737270 -11520260 - B3 SINE B2 -176 40 2 4 1422 222 136 0 0 chr12 109737423 109737467 -11520063 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1422 2715 130 10 5 chr12 109737504 109737921 -11519609 + MTC LTR MaLR 1 419 -2 5 1422 232 219 96 0 chr12 109737921 109737994 -11519536 - L1_Rod LINE L1 -29 5818 5739 5 1422 572 174 123 8 chr12 109737997 109738119 -11519411 - RLTR21 LTR ERVK 0 1572 1437 5 1422 288 0 0 0 chr12 109738144 109738176 -11519354 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1422 5323 206 50 26 chr12 109738178 109739344 -11518186 - RMER12B LTR ERVK -209 1195 2 5 1422 350 256 22 0 chr12 109739801 109739891 -11517639 - Lx7 LINE L1 -1971 5725 5634 5 1422 537 16 0 0 chr12 109740040 109740102 -11517428 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1422 563 287 66 15 chr12 109740220 109740492 -11517038 + B4A SINE B4 4 289 -3 5 1422 214 315 14 0 chr12 109740500 109740573 -11516957 + (CATA)n Simple_repeat Simple_repeat 4 77 0 5 1422 744 208 32 19 chr12 109743056 109743248 -11514282 + B3A SINE B2 5 194 -1 5 1422 641 142 25 19 chr12 109743315 109743473 -11514057 + CT-rich Low_complexity Low_complexity 3 161 0 5 1422 979 91 34 20 chr12 109743553 109743699 -11513831 + B1_Mus1 SINE Alu 1 148 0 5 1422 681 241 129 16 chr12 109744126 109744320 -11513210 - B3 SINE B2 0 216 1 5 1422 371 346 36 14 chr12 109744387 109744525 -11513005 + RSINE1 SINE B4 2 142 -23 5 1422 3064 46 45 18 chr12 109745123 109745519 -11512011 - MTB_Mm LTR MaLR 0 407 1 5 1422 1208 55 14 0 chr12 109745519 109745665 -11511865 + B1_Mus1 SINE Alu 1 148 0 5 1422 496 217 75 0 chr12 109745728 109745834 -11511696 - PB1D7 SINE Alu -2 118 5 5 1422 576 284 0 47 chr12 109746339 109746509 -11511021 + RSINE1 SINE B4 4 165 0 5 1422 362 265 29 29 chr12 109746793 109746898 -11510632 + PB1D10 SINE Alu 3 107 -10 5 1422 337 200 0 0 chr12 109746908 109746963 -11510567 + ID4 SINE ID 26 80 -3 5 1422 331 222 191 57 chr12 109747057 109747162 -11510368 - PB1D9 SINE Alu 0 120 2 5 1422 187 281 0 66 chr12 109747273 109747334 -11510196 + L3 LINE CR1 1 57 -4432 5 1422 22 0 0 0 chr12 109747757 109747779 -11509751 + GC_rich Low_complexity Low_complexity 1 22 0 5 1422 1198 62 0 0 chr12 109747834 109747980 -11509550 + B1_Mus2 SINE Alu 2 147 0 5 1422 300 284 69 69 chr12 109748675 109748819 -11508711 + B1_Mur4 SINE Alu 2 145 -5 5 1422 231 234 63 119 chr12 109750067 109750193 -11507337 - Charlie7 DNA MER1_type -629 1983 1865 5 1422 837 273 85 11 chr12 109750454 109750724 -11506806 - B4 SINE B4 -1 291 2 5 1422 698 190 99 20 chr12 109750758 109750909 -11506621 + B3 SINE B2 2 152 -41 5 1422 1134 88 0 26 chr12 109750933 109751085 -11506445 + B1_Mur4 SINE Alu 3 150 0 5 1422 26 50 0 0 chr12 109751436 109751476 -11506054 + AT_rich Low_complexity Low_complexity 1 40 0 5 1422 1187 75 0 0 chr12 109753926 109754072 -11503458 - B1_Mm SINE Alu -1 146 1 5 1422 275 179 15 0 chr12 109755540 109755607 -11501923 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1422 261 205 365 120 chr12 109755607 109755840 -11501690 - B4A SINE B4 0 292 3 5 1422 382 302 10 0 chr12 109755874 109755970 -11501560 - B1_Mur1 SINE Alu -21 128 32 5 1422 258 274 14 0 chr12 109755970 109756043 -11501487 + L1MA9 LINE L1 6228 6301 -11 5 1422 230 179 108 69 chr12 109756092 109756194 -11501336 + RLTR25B LTR ERVK 393 498 -530 5 1422 654 167 0 9 chr12 109756135 109756232 -11501298 + B1_Mur2 SINE Alu 42 138 -11 5 1422 207 0 0 0 chr12 109756232 109756255 -11501275 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1422 654 167 0 9 chr12 109756255 109756266 -11501264 + B1_Mur2 SINE Alu 139 149 0 5 1422 808 240 36 0 chr12 109756298 109756494 -11501036 + B3 SINE B2 1 203 -13 5 1422 908 145 20 7 chr12 109756915 109757061 -11500469 - B1_Mus1 SINE Alu 0 148 1 5 1422 424 298 17 119 chr12 109757624 109757860 -11499670 - B4 SINE B4 0 292 81 5 1422 209 68 102 0 chr12 109757860 109757919 -11499611 + T-rich Low_complexity Low_complexity 3 67 0 5 1422 752 114 121 57 chr12 109757919 109758059 -11499471 - B1_Mur4 SINE Alu 0 150 2 5 1422 214 281 36 24 chr12 109758185 109758269 -11499261 - 7SLRNA srpRNA srpRNA -225 89 5 5 1422 1137 75 0 0 chr12 109758438 109758612 -11498918 + (CA)n Simple_repeat Simple_repeat 2 175 0 5 1422 234 0 0 0 chr12 109758824 109758850 -11498680 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 1422 778 138 32 8 chr12 109758861 109758985 -11498545 - B1_Mur1 SINE Alu -2 147 21 5 1422 595 213 81 8 chr12 109759322 109759445 -11498085 + B1F SINE Alu 18 149 0 5 1422 13738 70 28 10 chr12 109760084 109762320 -11495210 + L1VL2 LINE L1 116 2393 -1222 5 1422 1241 41 7 0 chr12 109762320 109762466 -11495064 + B1_Mus1 SINE Alu 1 147 -1 5 1422 13738 73 19 17 chr12 109762466 109763061 -11494469 + L1VL2 LINE L1 2394 2988 -627 5 1422 1223 68 0 0 chr12 109763423 109763571 -11493959 - B1_Mus1 SINE Alu 0 148 1 5 1422 29 78 0 0 chr12 109763747 109763811 -11493719 + AT_rich Low_complexity Low_complexity 1 64 0 5 1422 1049 85 7 14 chr12 109763879 109764015 -11493515 + B1_Mm SINE Alu 1 136 -11 5 1422 293 0 27 0 chr12 109764015 109764052 -11493478 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1422 558 0 0 0 chr12 109764457 109764519 -11493011 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1422 788 284 25 20 chr12 109764626 109764827 -11492703 + B3 SINE B2 1 202 -14 5 1422 946 137 234 11 chr12 109766282 109766466 -11491064 + URR1B DNA MER1_type 1 225 0 5 1422 384 240 69 46 chr12 109767169 109767300 -11490230 - Tigger7 DNA MER2_type -2351 140 7 5 1422 612 244 5 129 chr12 109767462 109767664 -11489866 + B3A SINE B2 1 177 -21 5 1422 866 122 8 8 chr12 109768791 109768939 -11488591 - B1_Mur4 SINE Alu -1 149 1 5 1422 348 300 103 29 chr12 109769264 109769439 -11488091 - L1M4 LINE L1 -1883 4263 4076 5 1422 289 235 137 0 chr12 109769460 109769562 -11487968 - L1M4 LINE L1 -2134 4012 3897 5 1422 879 168 0 0 chr12 109769588 109769731 -11487799 + B1_Mur2 SINE Alu 7 149 0 5 1422 901 51 0 33 chr12 109769736 109769843 -11487687 + B1_Mm SINE Alu 31 137 -10 5 1422 302 0 26 0 chr12 109769843 109769881 -11487649 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1422 901 51 0 33 chr12 109769881 109769894 -11487636 + B1_Mm SINE Alu 138 147 0 5 1422 306 346 142 25 chr12 109769933 109770173 -11487357 - L1MC LINE L1 -2298 3848 3581 5 1422 261 250 33 0 chr12 109770176 109770236 -11487294 + GA-rich Low_complexity Low_complexity 4 65 0 5 1422 233 355 97 62 chr12 109770396 109770419 -11487111 - B1F1 SINE Alu 0 149 133 5 1422 1411 89 10 5 chr12 109770419 109770612 -11486918 - B2_Mm2 SINE B2 -1 194 1 5 1422 233 355 97 62 chr12 109770612 109770732 -11486798 - B1F1 SINE Alu -17 132 1 5 1422 1146 59 0 0 chr12 109770783 109770918 -11486612 + B1_Mus1 SINE Alu 2 136 -12 5 1422 233 29 0 29 chr12 109770919 109770954 -11486576 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1422 260 342 96 25 chr12 109770956 109771444 -11486086 - L1M4 LINE L1 -2678 3468 2946 5 1422 1055 210 9 52 chr12 109772406 109772617 -11484913 + B3 SINE B2 15 216 0 5 1422 200 271 0 0 chr12 109773541 109773589 -11483941 - L2b LINE L2 -19 3356 3309 5 1422 243 0 0 0 chr12 109773738 109773765 -11483765 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1422 261 0 0 0 chr12 109774096 109774125 -11483405 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1422 505 221 22 36 chr12 109774614 109774765 -11482765 - B3 SINE B2 0 198 51 5 1422 414 0 0 0 chr12 109775910 109775956 -11481574 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1422 368 304 77 72 chr12 109778273 109778468 -11479062 - ORR1E LTR MaLR -162 197 2 5 1422 48 67 0 0 chr12 109778606 109778696 -11478834 + AT_rich Low_complexity Low_complexity 1 90 0 5 1422 1071 105 189 22 chr12 109778935 109779100 -11478430 + B3 SINE B2 1 196 -20 5 1422 1684 16 0 0 chr12 109779100 109779285 -11478245 + B2_Mm1a SINE B2 3 187 -6 5 1422 1071 105 189 22 chr12 109779285 109779304 -11478226 + B3 SINE B2 197 215 -1 5 1422 32 26 0 0 chr12 109779850 109779889 -11477641 + AT_rich Low_complexity Low_complexity 1 39 0 5 1422 575 271 35 14 chr12 109779916 109780058 -11477472 - RSINE1 SINE B4 -17 148 4 5 1422 1120 288 28 3 chr12 109780583 109780872 -11476658 + MTE2b LTR MaLR 1 296 -83 5 1422 198 0 0 0 chr12 109782209 109782231 -11475299 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 5 1422 189 195 0 0 chr12 109782487 109782528 -11475002 + CT-rich Low_complexity Low_complexity 1 41 0 5 1422 198 103 0 0 chr12 109782960 109782989 -11474541 + (TTC)n Simple_repeat Simple_repeat 2 30 0 5 1422 203 308 0 0 chr12 109783285 109783337 -11474193 + (ATGGTG)n Simple_repeat Simple_repeat 5 56 0 5 1422 629 239 0 12 chr12 109783368 109783533 -11473997 - HAL1-2a_MD LINE L1 -517 2507 2345 5 1422 203 250 0 0 chr12 109783535 109783579 -11473951 + (ATGGTG)n Simple_repeat Simple_repeat 1 44 0 5 1422 1878 140 43 12 chr12 109783625 109783950 -11473580 - ORR1B2 LTR MaLR 0 367 33 5 1422 1224 94 0 0 chr12 109783953 109784220 -11473310 + (TG)n Simple_repeat Simple_repeat 1 267 0 5 1422 724 160 30 30 chr12 109785480 109785615 -11471915 - B1_Mur2 SINE Alu -14 135 1 5 1422 1623 156 3 137 chr12 109786472 109786851 -11470679 - ORR1A4 LTR MaLR 0 329 2 5 1422 264 30 0 0 chr12 109787398 109787431 -11470099 + (C)n Simple_repeat Simple_repeat 1 33 0 5 1422 341 211 6 0 chr12 109787681 109787750 -11469780 + B3A SINE B2 16 88 -128 5 1422 2458 83 3 21 chr12 109788083 109788414 -11469116 - ORR1A2 LTR MaLR -2 325 1 5 1422 719 219 111 37 chr12 109788499 109788689 -11468841 - B3 SINE B2 -11 205 2 5 1422 234 0 0 0 chr12 109789714 109789740 -11467790 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1422 260 227 227 0 chr12 109789892 109789980 -11467550 - MLT1B LTR MaLR -12 378 271 6 1422 455 199 183 0 chr12 109789989 109790120 -11467410 + ORR1E LTR MaLR 29 183 -176 6 1422 979 204 82 72 chr12 109790112 109790260 -11467270 + RMER5 LTR ERV1 226 381 -153 6 1422 575 151 456 7 chr12 109790260 109790407 -11467123 - B3 SINE B2 -2 214 2 6 1422 979 204 82 72 chr12 109790407 109790564 -11466966 + RMER5 LTR ERV1 382 534 0 6 1422 31 88 0 0 chr12 109793113 109793193 -11464337 + GC_rich Low_complexity Low_complexity 1 80 0 6 1422 189 74 0 0 chr12 109793225 109793252 -11464278 + (CCG)n Simple_repeat Simple_repeat 3 29 0 6 1422 182 65 65 0 chr12 109793878 109793909 -11463621 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 6 1422 586 299 109 58 chr12 109793962 109794263 -11463267 - L1ME3A LINE L1 -218 5955 5621 6 1422 226 50 0 48 chr12 109794263 109794305 -11463225 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1422 586 299 109 58 chr12 109794305 109794609 -11462921 - L1ME3A LINE L1 -553 5620 5319 6 1422 245 210 16 0 chr12 109794842 109794904 -11462626 - L1MEg LINE L1 -4554 1530 1468 6 1422 339 286 206 56 chr12 109795017 109795269 -11462261 - B4A SINE B4 0 292 3 6 1422 281 182 303 11 chr12 109795274 109795363 -11462167 - PB1D10 SINE Alu 0 117 3 6 1422 357 289 94 0 chr12 109795442 109795591 -11461939 - L1MB8 LINE L1 0 6178 6016 6 1422 248 166 19 33 chr12 109795733 109795793 -11461737 - PB1D7 SINE Alu 0 127 67 6 1422 616 24 24 0 chr12 109795877 109795959 -11461571 + (TCC)n Simple_repeat Simple_repeat 1 84 0 6 1422 289 143 20 0 chr12 109795962 109796011 -11461519 - PB1D9 SINE Alu -40 80 31 6 1422 449 339 165 40 chr12 109796011 109796685 -11460845 - L1MEg LINE L1 -4948 1136 379 6 1422 1649 185 138 3 chr12 109796696 109797065 -11460465 - MTD LTR MaLR 0 419 1 6 1422 21 0 0 0 chr12 109797394 109797415 -11460115 + AT_rich Low_complexity Low_complexity 1 21 0 6 1422 1285 113 11 0 chr12 109797812 109797998 -11459532 - B2_Mm2 SINE B2 -6 189 2 6 1422 376 231 48 24 chr12 109798801 109798925 -11458605 - RMER15 LTR ERVL -17 558 432 6 1422 252 316 31 21 chr12 109799222 109799319 -11458211 - LTR86C LTR ERVL -235 386 289 6 1422 420 150 0 0 chr12 109799516 109799596 -11457934 + (TC)n Simple_repeat Simple_repeat 1 80 0 6 1422 282 29 0 0 chr12 109799625 109799660 -11457870 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1422 258 324 0 0 chr12 109799754 109799828 -11457702 + ID4 SINE ID 5 78 -5 6 1422 1368 30 78 0 chr12 109800223 109800390 -11457140 - B2_Mm2 SINE B2 -14 181 2 6 1422 296 287 34 11 chr12 109800802 109800890 -11456640 - L1M5 LINE L1 -435 5689 5600 6 1422 463 155 46 55 chr12 109800958 109801067 -11456463 + Lx8 LINE L1 6840 6947 -526 6 1422 279 265 0 0 chr12 109801074 109801176 -11456354 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 1422 469 147 168 0 chr12 109801180 109801275 -11456255 + Lx8 LINE L1 6958 7068 -405 6 1422 380 239 26 60 chr12 109801281 109801397 -11456133 + Lx8 LINE L1 7197 7308 -165 6 1422 193 337 71 0 chr12 109801792 109801890 -11455640 + MIRb SINE MIR 26 133 -135 6 1422 293 217 33 0 chr12 109802154 109802214 -11455316 - ID4 SINE ID -10 73 12 6 1422 234 293 146 0 chr12 109802225 109802307 -11455223 - PB1D10 SINE Alu -22 95 2 6 1422 26 30 0 0 chr12 109803814 109803847 -11453683 + AT_rich Low_complexity Low_complexity 1 33 0 6 1422 439 204 198 32 chr12 109803852 109804009 -11453521 - B3A SINE B2 -15 183 1 6 1422 242 319 12 43 chr12 109804014 109804178 -11453352 - L1MC3 LINE L1 -314 7471 7313 6 1422 215 31 0 30 chr12 109804372 109804405 -11453125 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1422 460 242 131 30 chr12 109805567 109805735 -11451795 - MT2A LTR ERVL -130 471 157 6 1422 39036 53 15 7 chr12 109805742 109812166 -11445364 - L1Md_T LINE L1 0 6582 108 6 1422 615 226 41 59 chr12 109812166 109812418 -11445112 - MT2A LTR ERVL -261 340 1 6 1422 500 126 46 0 chr12 109812418 109812505 -11445025 - MERVL_2A-int LTR ERVL -2 5759 5669 6 1422 827 101 12 119 chr12 109812508 109812676 -11444854 + ORR1C1 LTR MaLR 2 151 -227 6 1422 353 236 128 60 chr12 109812694 109812811 -11444719 + B1_Mus2 SINE Alu 14 138 -9 6 1422 1100 164 70 9 chr12 109812778 109813048 -11444482 + ORR1C1 LTR MaLR 34 368 -10 6 1422 2611 119 81 42 chr12 109813056 109813467 -11444063 - MERVL_2A-int LTR ERVL -90 5671 5240 6 1422 1562 62 0 5 chr12 109813467 109813662 -11443868 - B2_Mm2 SINE B2 0 195 2 6 1422 2611 119 81 42 chr12 109813662 109813705 -11443825 - MERVL_2A-int LTR ERVL -522 5239 5199 6 1422 872 150 77 50 chr12 109813709 109813891 -11443639 + URR1B DNA MER1_type 39 225 0 6 1422 13508 149 54 9 chr12 109813892 109816130 -11441400 - MERVL_2A-int LTR ERVL -567 5194 2858 6 1422 3471 115 143 3 chr12 109816135 109816846 -11440684 - MERVL_2A-int LTR ERVL -3200 2561 1751 6 1422 741 199 7 58 chr12 109816866 109817021 -11440509 - B1_Mur4 SINE Alu 0 150 4 6 1422 914 168 19 0 chr12 109817021 109817176 -11440354 - MERVL_2A-int LTR ERVL -4007 1754 1597 6 1422 1373 28 0 6 chr12 109817176 109817357 -11440173 - MTB LTR MaLR 0 400 221 6 1422 228 135 0 0 chr12 109817360 109817397 -11440133 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1422 1605 56 4 21 chr12 109817621 109817859 -11439671 - MTB LTR MaLR -165 235 2 6 1422 6654 155 33 7 chr12 109817861 109818966 -11438564 - MERVL_2A-int LTR ERVL -4161 1600 468 6 1422 369 206 28 0 chr12 109818977 109819084 -11438446 + (TA)n Simple_repeat Simple_repeat 2 111 0 6 1422 942 215 97 32 chr12 109819171 109819480 -11438050 - MT2A LTR ERVL -133 468 1 6 1422 995 218 29 14 chr12 109819544 109819753 -11437777 + B3 SINE B2 5 216 0 6 1422 199 245 75 0 chr12 109819911 109819964 -11437566 + MER5B DNA MER1_type 122 178 0 6 1422 774 233 24 72 chr12 109820455 109820663 -11436867 - B3A SINE B2 0 198 1 6 1422 25 31 0 0 chr12 109820752 109820784 -11436746 + AT_rich Low_complexity Low_complexity 1 32 0 6 1422 376 274 65 13 chr12 109821047 109821202 -11436328 + L1MEg LINE L1 212 374 -5868 6 1422 287 183 33 0 chr12 109821242 109821302 -11436228 - RSINE1 SINE B4 -24 141 80 6 1422 226 235 198 12 chr12 109821352 109821438 -11436092 - B4A SINE B4 -189 103 2 6 1422 298 299 27 36 chr12 109821449 109821560 -11435970 - RSINE1 SINE B4 -7 158 49 6 1422 465 242 45 0 chr12 109821756 109821888 -11435642 + MER2 DNA MER2_type 94 231 -114 6 1422 24 53 0 0 chr12 109821912 109821950 -11435580 + AT_rich Low_complexity Low_complexity 1 38 0 6 1422 294 248 134 18 chr12 109822461 109822625 -11434905 + L1MEg LINE L1 4856 5038 -1108 6 1422 482 314 120 3 chr12 109822946 109823237 -11434293 - L1MB7 LINE L1 -47 6137 5813 6 1422 867 201 63 5 chr12 109823290 109823480 -11434050 + B3 SINE B2 11 211 -5 6 1422 2962 159 79 9 chr12 109823810 109824357 -11433173 - RMER4B LTR ERVK 0 585 1 6 1422 216 0 0 0 chr12 109824703 109824727 -11432803 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1422 997 88 0 7 chr12 109824728 109824865 -11432665 - B1_Mus1 SINE Alu -11 137 2 6 1422 1138 68 7 0 chr12 109824878 109825024 -11432506 - B1_Mus1 SINE Alu 0 148 2 6 1422 32 26 0 0 chr12 109825396 109825435 -11432095 + AT_rich Low_complexity Low_complexity 1 39 0 6 1422 3308 38 2 8 chr12 109825577 109825975 -11431555 - MTA_Mm LTR MaLR 0 396 1 6 1422 594 229 21 35 chr12 109826241 109826386 -11431144 - RSINE1 SINE B4 0 165 23 6 1422 9221 200 28 20 chr12 109826391 109827098 -11430432 - Lx6 LINE L1 -4 7456 6742 6 1422 243 0 0 0 chr12 109827098 109827125 -11430405 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1422 9221 200 28 20 chr12 109827125 109827942 -11429588 - Lx6 LINE L1 -719 6741 5924 6 1422 974 57 0 136 chr12 109827942 109828104 -11429426 + B1_Mus2 SINE Alu 2 141 -6 6 1422 9221 147 54 2 chr12 109828104 109829059 -11428471 - Lx6 LINE L1 -1537 5923 4909 6 1422 963 100 42 28 chr12 109829059 109829203 -11428327 - B1_Mm SINE Alu 0 147 2 6 1422 5468 145 55 1 chr12 109829203 109829244 -11428286 - Lx6 LINE L1 -972 4908 4867 6 1422 568 203 20 68 chr12 109829245 109829393 -11428137 - B1_Mur1 SINE Alu -6 143 3 6 1422 276 200 144 21 chr12 109829505 109829602 -11427928 - L1MD LINE L1 -842 5304 5196 6 1422 350 289 58 13 chr12 109829669 109829823 -11427707 - L1M4c LINE L1 -835 5541 5381 6 1422 348 263 75 62 chr12 109829835 109829981 -11427549 - B4A SINE B4 0 292 145 6 1422 228 185 123 0 chr12 109829994 109830059 -11427471 - B4A SINE B4 -219 73 1 6 1422 922 251 98 11 chr12 109830180 109830538 -11426992 - L1M4c LINE L1 -1134 5242 4854 6 1422 280 284 43 9 chr12 109830549 109830657 -11426873 - PB1D10 SINE Alu -21 128 5 6 1422 469 265 0 8 chr12 109830705 109830823 -11426707 - PB1 SINE Alu 0 127 11 6 1422 317 223 207 0 chr12 109831517 109831685 -11425845 - L1M4c LINE L1 -3834 2542 2330 6 1422 348 194 184 0 chr12 109832069 109832167 -11425363 - L1M4c LINE L1 -4634 1750 1635 6 1422 234 0 0 0 chr12 109832178 109832204 -11425326 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1422 2957 71 52 7 chr12 109832334 109832773 -11424757 - MusHAL1 LINE L1 -626 2086 1628 6 1422 246 238 206 10 chr12 109832857 109832959 -11424571 + B1F2 SINE Alu 2 123 -26 6 1422 1103 216 14 23 chr12 109833529 109833747 -11423783 - B3 SINE B2 0 216 1 6 1422 1001 137 7 0 chr12 109833788 109833934 -11423596 + B1_Mus1 SINE Alu 2 148 0 6 1422 1497 27 43 5 chr12 109833942 109834126 -11423404 + B2_Mm1a SINE B2 2 192 -1 6 1422 212 238 173 82 chr12 109834139 109834158 -11423372 - B2_Mm1a SINE B2 -14 179 60 6 1422 307 230 209 44 chr12 109834158 109834249 -11423281 - RSINE1 SINE B4 0 165 60 6 1422 420 319 125 71 chr12 109834258 109834521 -11423009 - ORR1E-int LTR MaLR -1210 370 79 6 1422 825 270 62 40 chr12 109834521 109834578 -11422952 - B4 SINE B4 -11 281 228 6 1422 1245 48 0 0 chr12 109834578 109834725 -11422805 - B1_Mus1 SINE Alu -1 147 1 6 1422 825 270 62 40 chr12 109834725 109834941 -11422589 - B4 SINE B4 -65 227 2 6 1422 420 319 125 71 chr12 109834941 109835028 -11422502 - ORR1E-int LTR MaLR -1502 78 1 6 1422 1021 251 80 57 chr12 109835296 109835646 -11421884 - ORR1E LTR MaLR 0 359 2 6 1422 245 29 0 29 chr12 109836277 109836312 -11421218 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 6 1422 278 308 50 80 chr12 109836312 109836513 -11421017 - B2_Mm2 SINE B2 0 195 1 6 1422 850 211 7 0 chr12 109836372 109836514 -11421016 - RSINE1 SINE B4 -22 143 1 6 1422 240 280 139 36 chr12 109836765 109836902 -11420628 - Lx8 LINE L1 -506 6967 6817 6 1422 450 288 29 53 chr12 109836902 109836985 -11420545 - L1_Mur3 LINE L1 -907 4973 4896 6 1422 1408 70 21 0 chr12 109836985 109837171 -11420359 - B2_Mm2 SINE B2 -5 190 1 6 1422 450 282 112 60 chr12 109837171 109837355 -11420175 - L1_Mur3 LINE L1 -985 4895 4691 6 1422 22 0 0 0 chr12 109837721 109837743 -11419787 + AT_rich Low_complexity Low_complexity 1 22 0 6 1422 294 260 62 38 chr12 109837882 109837962 -11419568 + PB1D10 SINE Alu 36 117 0 6 1422 225 0 0 0 chr12 109837966 109837991 -11419539 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1422 200 277 61 15 chr12 109838040 109838106 -11419424 + L2a LINE L2 3347 3415 -11 6 177 1088 266 17 51 chr12 109838116 109838409 -11419121 - B4A SINE B4 -4 288 6 6 1423 905 204 161 48 chr12 109838687 109838960 -11418570 - ORR1D1 LTR MaLR -70 304 1 7 1423 1255 88 0 6 chr12 109840664 109840836 -11416694 + B2_Mm2 SINE B2 1 171 -24 7 1423 708 269 132 46 chr12 109841134 109841461 -11416069 - ORR1E LTR MaLR -4 355 1 7 1423 189 316 51 34 chr12 109841557 109841675 -11415855 + MIRb SINE MIR 32 154 -114 7 1423 646 241 113 61 chr12 109841853 109842083 -11415447 + MER2 DNA MER2_type 101 342 -3 7 1423 656 215 54 0 chr12 109842211 109842341 -11415189 - B1_Mur4 SINE Alu -13 137 1 7 1423 195 114 0 0 chr12 109844939 109844974 -11412556 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1423 347 20 0 57 chr12 109845097 109845150 -11412380 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1423 680 210 0 8 chr12 109845585 109845710 -11411820 + RSINE1 SINE B4 13 136 -29 7 1423 1170 184 248 10 chr12 109845774 109846076 -11411454 + ORR1D1 LTR MaLR 1 374 0 7 1423 180 0 0 0 chr12 109846491 109846511 -11411019 + (TTTAG)n Simple_repeat Simple_repeat 2 21 0 7 1423 539 296 198 5 chr12 109846768 109846985 -11410545 - MER2 DNA MER2_type 0 345 87 7 1423 818 215 28 30 chr12 109847024 109847214 -11410316 - ID_B1 SINE B4 -73 219 31 7 1423 408 316 14 41 chr12 109847311 109847456 -11410074 + MIRb SINE MIR 64 204 -64 7 1423 435 285 47 74 chr12 109848109 109848257 -11409273 + B4A SINE B4 5 148 -144 7 1423 237 351 90 22 chr12 109848879 109848941 -11408589 + L2 LINE L2 2391 2461 -958 7 1423 1415 79 10 16 chr12 109848941 109849133 -11408397 - B2_Mm1a SINE B2 -2 191 1 7 1423 237 351 90 22 chr12 109849133 109849204 -11408326 + L2 LINE L2 2462 2533 -886 7 1423 312 91 0 0 chr12 109849544 109849588 -11407942 + (TATG)n Simple_repeat Simple_repeat 3 46 0 7 1423 252 59 0 0 chr12 109850008 109850042 -11407488 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 7 1423 1253 41 0 0 chr12 109850042 109850188 -11407342 - B1_Mus1 SINE Alu -1 147 2 7 1423 824 94 7 72 chr12 109850387 109850525 -11407005 + B2_Mm1t SINE B2 59 187 -6 7 1423 444 266 21 0 chr12 109852334 109852428 -11405102 + B1F2 SINE Alu 47 142 -7 7 1423 351 228 219 0 chr12 109852839 109852953 -11404577 + B1F SINE Alu 4 142 -7 7 1423 293 241 129 43 chr12 109853550 109853689 -11403841 + YREP_Mm Unknown Unknown 141 291 -1521 7 1423 668 221 21 7 chr12 109853572 109853713 -11403817 - ID_B1 SINE B4 0 224 82 7 1423 220 170 43 0 chr12 109853965 109854012 -11403518 + CT-rich Low_complexity Low_complexity 1 49 0 7 1423 315 0 0 0 chr12 109854013 109854048 -11403482 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 7 1423 758 177 7 66 chr12 109854049 109854200 -11403330 - B1_Mur2 SINE Alu -7 142 1 7 1423 436 292 152 9 chr12 109855438 109855669 -11401861 + MLT1B LTR MaLR 4 267 -123 7 1423 1190 68 0 0 chr12 109857039 109857187 -11400343 + B1_Mus1 SINE Alu 1 148 0 7 1423 313 144 301 6 chr12 109857299 109857381 -11400149 - PB1D7 SINE Alu -40 109 10 7 1423 998 258 119 14 chr12 109857404 109857699 -11399831 - MTE2b LTR MaLR -53 326 1 7 1423 383 268 160 16 chr12 109857762 109857887 -11399643 - RSINE1 SINE B4 -19 146 4 7 1423 28 29 0 0 chr12 109858000 109858035 -11399495 + AT_rich Low_complexity Low_complexity 1 35 0 7 1423 543 331 0 19 chr12 109858919 109859073 -11398457 + RSINE1 SINE B4 2 152 -13 7 1423 616 251 129 6 chr12 109859795 109860047 -11397483 - MER33 DNA MER1_type -23 301 20 7 1423 429 109 0 0 chr12 109860325 109860389 -11397141 + (TCC)n Simple_repeat Simple_repeat 3 66 0 7 1423 306 310 129 14 chr12 109861191 109861338 -11396192 + L1MC1 LINE L1 5840 6003 -330 7 1423 266 281 121 25 chr12 109861367 109861524 -11396006 - L1MC1 LINE L1 -30 6303 6132 7 1423 288 286 61 18 chr12 109861603 109861717 -11395813 - MIRc SINE MIR -36 232 114 7 1423 233 342 147 13 chr12 109862697 109862854 -11394676 - L3 LINE CR1 -362 4127 3950 7 1423 417 238 26 12 chr12 109863150 109863277 -11394253 + B4A SINE B4 164 292 0 7 1423 269 297 103 51 chr12 109863529 109863541 -11393989 + B4 SINE B4 77 198 -93 7 1423 413 262 58 10 chr12 109863541 109863645 -11393885 + B1F1 SINE Alu 1 109 -40 7 1423 306 268 97 9 chr12 109864004 109864117 -11393413 - L1MC1 LINE L1 -519 5825 5703 7 1423 389 182 22 33 chr12 109864393 109864484 -11393046 - L1MB8 LINE L1 -1 6177 6088 7 1423 357 270 31 0 chr12 109864803 109864907 -11392623 + PB1D9 SINE Alu 12 119 -1 7 1423 782 209 102 21 chr12 109864917 109865103 -11392427 + B3 SINE B2 1 201 -15 7 1423 310 333 109 87 chr12 109865223 109865581 -11391949 - HAL1 LINE L1 -991 1516 1151 7 1423 2229 139 42 113 chr12 109866585 109867087 -11390443 - RMER4A LTR ERVK 0 466 1 7 1423 1415 213 52 55 chr12 109867889 109868272 -11389258 - RLTR14 LTR ERV1 0 382 1 7 1423 326 294 144 67 chr12 109869224 109869585 -11387945 + L1MEc LINE L1 84 472 -5928 7 1423 1200 273 42 45 chr12 109869692 109869951 -11387579 + ORR1E LTR MaLR 8 259 -100 7 1423 479 214 44 18 chr12 109869951 109870065 -11387465 - PB1D7 SINE Alu -1 119 3 7 1423 1200 273 42 45 chr12 109870065 109870158 -11387372 + ORR1E LTR MaLR 260 358 -1 7 1423 930 236 20 15 chr12 109870161 109870359 -11387171 + ORR1E-int LTR MaLR 2 200 -1380 7 1423 755 263 47 28 chr12 109870366 109870577 -11386953 + B4A SINE B4 13 227 -65 7 1423 1680 244 155 96 chr12 109870580 109871368 -11386162 + ORR1E-int LTR MaLR 209 1042 -538 7 1423 322 268 101 47 chr12 109871271 109871400 -11386130 + B4A SINE B4 153 288 -4 7 1423 444 265 29 0 chr12 109871452 109871554 -11385976 + ID_B1 SINE B4 84 188 -36 7 1423 259 316 92 57 chr12 109871554 109871592 -11385938 + B1_Mus2 SINE Alu 3 147 0 7 1423 842 288 30 79 chr12 109871647 109871952 -11385578 + MLT1D LTR MaLR 208 497 -8 7 1423 422 283 127 72 chr12 109872054 109872455 -11385075 + L1MEc LINE L1 2730 3154 -3159 7 1423 234 314 186 0 chr12 109872661 109872747 -11384783 - PB1D10 SINE Alu -15 102 1 7 1423 667 262 62 69 chr12 109873303 109873659 -11383871 + RMER10A LTR ERVL 1 420 -22 7 1423 728 0 26 35 chr12 109873659 109873775 -11383755 + (TTCTC)n Simple_repeat Simple_repeat 5 119 0 7 1423 356 278 102 75 chr12 109873775 109873799 -11383731 + RMER10A LTR ERVL 421 442 0 7 1423 216 354 39 23 chr12 109874773 109874903 -11382627 - MIRb SINE MIR -99 169 38 7 1423 873 50 0 0 chr12 109875074 109875193 -11382337 + (TG)n Simple_repeat Simple_repeat 2 120 0 7 1423 437 243 26 113 chr12 109876581 109876741 -11380789 + PB1D7 SINE Alu 9 301 -10 7 1423 286 345 140 42 chr12 109877002 109877453 -11380077 - L2 LINE L2 -354 3065 2571 7 1423 407 328 30 50 chr12 109877673 109877875 -11379655 + L2a LINE L2 3187 3384 -42 7 1423 208 284 56 11 chr12 109878549 109878638 -11378892 - MIR SINE MIR -100 108 16 7 1423 216 24 48 24 chr12 109879112 109879154 -11378376 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 7 1423 291 273 152 0 chr12 109879477 109879576 -11377954 + Charlie1b DNA MER1_type 69 182 -341 7 1423 377 267 0 0 chr12 109880123 109880198 -11377332 - ID4 SINE ID 0 83 9 7 1423 674 203 67 8 chr12 109882515 109882649 -11374881 + B1_Mur1 SINE Alu 3 144 -5 7 1423 203 244 0 0 chr12 109884610 109884651 -11372879 + L3 LINE CR1 3825 3865 -624 7 1423 218 231 162 84 chr12 109886092 109886234 -11371296 + MIR SINE MIR 30 182 -80 7 1423 233 310 17 0 chr12 109887046 109887104 -11370426 + B4A SINE B4 234 292 0 7 1423 836 238 81 41 chr12 109887490 109887687 -11369843 + B3 SINE B2 10 214 -2 7 1423 214 281 18 0 chr12 109888113 109888170 -11369360 - ID4 SINE ID -23 60 3 7 1423 265 283 84 50 chr12 109888170 109888269 -11369261 + MLT1A1 LTR MaLR 302 404 -4 7 1423 339 359 72 30 chr12 109888703 109889065 -11368465 + L1M5 LINE L1 2306 2682 -3464 7 1423 1411 143 93 4 chr12 109889067 109889326 -11368204 - ORR1B2 LTR MaLR 0 367 86 7 1423 260 316 40 10 chr12 109889412 109889511 -11368019 + MIR SINE MIR 40 141 -67 7 1423 815 158 21 21 chr12 109889781 109889923 -11367607 - B1_Mur3 SINE Alu -6 143 2 7 1423 360 315 41 35 chr12 109890757 109890965 -11366565 - MIRc SINE MIR -47 215 12 7 1423 227 344 77 15 chr12 109891987 109892117 -11365413 + MIRc SINE MIR 6 143 -125 7 1423 1252 321 78 4 chr12 109892721 109893250 -11364280 + MER20B DNA MER1_type 215 782 -1 7 1423 273 119 0 0 chr12 109893916 109893958 -11363572 + (GGA)n Simple_repeat Simple_repeat 2 43 0 7 1423 333 0 0 0 chr12 109893971 109894008 -11363522 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1423 362 301 8 47 chr12 109896804 109896933 -11360597 - MamSINE1 SINE tRNA -132 158 35 7 1423 2886 142 68 0 chr12 109897067 109897540 -11359990 - RLTR18B LTR ERVK -7 505 1 7 1423 312 315 58 0 chr12 109897561 109897689 -11359841 + MIRb SINE MIR 94 238 -30 7 1423 624 239 0 43 chr12 109898275 109898415 -11359115 + RSINE1 SINE B4 3 136 -29 7 1423 207 389 15 30 chr12 109898582 109898717 -11358813 - MIRc SINE MIR -58 210 78 7 1423 416 272 0 19 chr12 109898950 109899055 -11358475 + PB1D7 SINE Alu 18 120 0 7 1423 270 387 108 3 chr12 109899265 109899589 -11357941 + L2 LINE L2 2698 3055 -364 7 1423 667 277 121 46 chr12 109899697 109900114 -11357416 - RLTR11B LTR ERVK -27 414 1 7 1423 243 230 141 54 chr12 109900493 109900585 -11356945 - MTE2a LTR MaLR 0 379 280 7 1423 1232 163 64 0 chr12 109900891 109901094 -11356436 + B3 SINE B2 1 216 0 7 1423 278 315 0 64 chr12 109901134 109901212 -11356318 + PB1D10 SINE Alu 7 79 -38 7 1423 267 337 11 53 chr12 109901212 109901228 -11356302 + ID_B1 SINE B4 88 177 -47 7 1423 1120 8 0 0 chr12 109901229 109901363 -11356167 - L1_Mus2 LINE L1 -757 5881 5748 7 1423 5404 69 0 3 chr12 109901364 109902029 -11355501 + L1_Mus2 LINE L1 5904 6566 0 7 1423 2267 152 40 5 chr12 109902219 109902616 -11354914 - MTC LTR MaLR -10 411 1 7 1423 4471 168 198 19 chr12 109902616 109903682 -11353848 - MTC-int LTR MaLR 0 1258 2 7 1423 1963 121 156 6 chr12 109903682 109904041 -11353489 - MTC LTR MaLR -1 420 8 7 1423 391 233 64 39 chr12 109904416 109904598 -11352932 - MTD LTR MaLR -25 394 167 8 1423 293 173 0 0 chr12 109904616 109904668 -11352862 - MTD LTR MaLR -327 52 1 8 1423 259 305 171 8 chr12 109905816 109905945 -11351585 + MIRc SINE MIR 118 267 -1 8 1423 426 147 94 10 chr12 109906561 109906657 -11350873 + B1_Mur1 SINE Alu 46 149 0 8 1423 289 211 122 129 chr12 109906657 109906708 -11350822 + B4 SINE B4 131 276 -16 8 1423 332 226 14 9 chr12 109907648 109907748 -11349782 + PB1D10 SINE Alu 27 125 -2 8 1423 386 248 105 0 chr12 109908593 109908698 -11348832 - B4A SINE B4 -171 121 6 8 1423 347 267 37 28 chr12 109908698 109908806 -11348724 + B3A SINE B2 90 198 0 8 1423 829 197 0 26 chr12 109908833 109908984 -11348546 + B1_Mur3 SINE Alu 1 147 -2 8 1423 616 173 16 8 chr12 109909934 109910062 -11347468 - ORR1D2 LTR MaLR -241 129 1 8 1423 181 206 61 45 chr12 109910324 109910390 -11347140 + MIRm SINE MIR 70 136 -140 8 1423 207 0 0 0 chr12 109910511 109910534 -11346996 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1423 1312 20 0 0 chr12 109910534 109910681 -11346849 - B1_Mus2 SINE Alu 0 147 1 8 1423 649 281 52 138 chr12 109911961 109912027 -11345503 + B4 SINE B4 2 76 -216 8 1423 216 0 0 0 chr12 109912027 109912051 -11345479 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1423 649 281 52 138 chr12 109912051 109912191 -11345339 + B4 SINE B4 77 214 -78 8 1423 696 24 0 0 chr12 109912191 109912273 -11345257 + (GGAAA)n Simple_repeat Simple_repeat 3 84 0 8 1423 1278 34 0 0 chr12 109912273 109912419 -11345111 + B1_Mus2 SINE Alu 2 147 0 8 1423 649 281 52 138 chr12 109912419 109912515 -11345015 + B4 SINE B4 215 278 -14 8 1423 242 176 0 42 chr12 109913667 109913738 -11343792 + C-rich Low_complexity Low_complexity 6 73 0 8 1423 1411 74 26 0 chr12 109914541 109914730 -11342800 + B2_Mm2 SINE B2 1 194 -1 8 1423 3503 215 123 82 chr12 109915852 109916006 -11341524 - RLTR21 LTR ERVK -118 1454 1263 8 1423 180 77 0 0 chr12 109916006 109916032 -11341498 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1423 3503 194 167 61 chr12 109916032 109917085 -11340445 - RLTR21 LTR ERVK -262 1310 173 8 1423 278 214 19 136 chr12 109917096 109917199 -11340331 - RLTR21 LTR ERVK -1475 97 7 8 1423 243 0 0 0 chr12 109918663 109918690 -11338840 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1423 1182 75 0 0 chr12 109918691 109918838 -11338692 + B1_Mm SINE Alu 1 147 0 8 1423 217 217 69 42 chr12 109919994 109920066 -11337464 - ID4_ SINE ID -7 76 3 8 1423 1217 61 0 0 chr12 109922681 109922828 -11334702 + B1_Mus1 SINE Alu 2 148 0 8 1423 732 138 30 53 chr12 109922929 109923098 -11334432 - Lx5 LINE L1 0 7050 6886 8 1423 504 105 0 0 chr12 109929392 109929468 -11328062 + (CA)n Simple_repeat Simple_repeat 2 77 0 8 1423 685 268 30 0 chr12 109931981 109932145 -11325385 + ID_B1 SINE B4 35 203 -21 8 1423 396 0 0 0 chr12 109932146 109932190 -11325340 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1423 543 31 0 0 chr12 109932214 109932279 -11325251 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 8 1423 980 84 35 0 chr12 109932322 109932464 -11325066 + B1_Mus1 SINE Alu 2 148 0 8 1423 317 262 149 0 chr12 109935683 109935790 -11321740 + MLT1A0 LTR MaLR 45 167 -198 8 1423 396 261 73 22 chr12 109936721 109936858 -11320672 + MER63B DNA AcHobo 282 425 -11 8 1423 612 27 0 0 chr12 109937684 109937758 -11319772 + (TG)n Simple_repeat Simple_repeat 2 75 0 8 1423 451 269 118 17 chr12 109938919 109939097 -11318433 + ID_B1 SINE B4 1 196 -28 8 1423 468 0 0 0 chr12 109939329 109939381 -11318149 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1423 5025 94 36 11 chr12 109941191 109941918 -11315612 - Lx LINE L1 0 6654 5910 8 1423 333 51 16 48 chr12 109942267 109942329 -11315201 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 8 1423 358 259 83 0 chr12 109942685 109942793 -11314737 + PB1D7 SINE Alu 3 119 -1 8 1423 2321 130 96 2 chr12 109943166 109943582 -11313948 - RMER6B LTR ERVK -6 455 1 8 1423 15671 151 72 93 chr12 109943585 109945023 -11312507 - MYSERV6-int LTR ERVK -1196 7763 6323 8 1423 278 208 0 54 chr12 109945023 109945094 -11312436 - B1_Mus1 SINE Alu -78 71 11 8 1423 223 71 0 0 chr12 109945087 109945115 -11312415 - B1_Mus1 SINE Alu -100 48 21 8 1423 15671 151 72 93 chr12 109945115 109945213 -11312317 - MYSERV6-int LTR ERVK -1196 6322 6223 8 1423 1199 55 0 0 chr12 109945213 109945359 -11312171 - B1_Mus2 SINE Alu -1 146 1 8 1423 15671 151 72 93 chr12 109945359 109946486 -11311044 - MYSERV6-int LTR ERVK -2737 6222 5052 8 1423 257 217 200 0 chr12 109946486 109946546 -11310984 - B1_Mur4 SINE Alu -78 72 1 8 1423 15671 151 72 93 chr12 109946546 109947262 -11310268 - MYSERV6-int LTR ERVK -2737 5051 4306 8 1423 22 0 0 0 chr12 109947263 109947285 -11310245 + AT_rich Low_complexity Low_complexity 1 22 0 8 1423 4252 118 5 5 chr12 109947285 109947906 -11309624 - Lx4A LINE L1 0 7058 6438 8 1423 702 174 140 13 chr12 109947977 109948134 -11309396 + RMER6A LTR ERVK 573 749 -7 8 1423 381 22 0 0 chr12 109948134 109948180 -11309350 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1423 183 42 0 0 chr12 109948658 109948682 -11308848 + (CAA)n Simple_repeat Simple_repeat 1 24 0 8 1423 1254 54 0 0 chr12 109948805 109948953 -11308577 + B1_Mus1 SINE Alu 1 148 0 8 1423 23 0 0 0 chr12 109948965 109948988 -11308542 + AT_rich Low_complexity Low_complexity 1 23 0 8 1423 363 284 93 17 chr12 109949042 109949214 -11308316 + MTEb LTR MaLR 190 374 -5 8 1423 235 327 94 35 chr12 109949541 109949712 -11307818 - B4A SINE B4 0 292 112 8 1423 1307 89 16 16 chr12 109949713 109949907 -11307623 + B2_Mm2 SINE B2 1 194 -1 8 1423 267 31 0 0 chr12 109949947 109949979 -11307551 + (TTA)n Simple_repeat Simple_repeat 1 32 0 8 1423 362 286 61 67 chr12 109949987 109950058 -11307472 - RSINE1 SINE B4 0 165 102 8 1423 1352 243 68 14 chr12 109950058 109950409 -11307121 + ORR1D2 LTR MaLR 1 370 0 8 1423 362 286 61 67 chr12 109950409 109950502 -11307028 - RSINE1 SINE B4 -64 101 2 8 1423 336 317 29 19 chr12 109950507 109950610 -11306920 - PB1D10 SINE Alu 0 117 14 8 1423 1961 58 41 68 chr12 109951480 109951774 -11305756 + ORR1A2 LTR MaLR 1 286 -41 8 1423 1610 26 5 10 chr12 109951781 109951975 -11305555 + B2_Mm1t SINE B2 1 193 0 8 1423 447 100 13 40 chr12 109952988 109953084 -11304446 + ORR1A2 LTR MaLR 272 378 0 8 1423 2415 79 3 9 chr12 109953660 109953981 -11303549 + ORR1A2 LTR MaLR 1 319 -8 8 1423 1156 191 14 0 chr12 109954818 109955028 -11302502 - B3 SINE B2 0 216 4 8 1423 2350 133 183 0 chr12 109955450 109955827 -11301703 - RLTR41 LTR ERV1 0 446 1 8 1423 180 0 0 0 chr12 109956222 109956242 -11301288 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1423 1210 55 0 0 chr12 109956242 109956388 -11301142 - B1_Mus2 SINE Alu 0 147 2 8 1423 1218 54 0 0 chr12 109956468 109956615 -11300915 + B1_Mm SINE Alu 1 147 0 8 1423 476 122 12 0 chr12 109956618 109956700 -11300830 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 8 1423 263 311 66 85 chr12 109956700 109956971 -11300559 + RLTR15 LTR ERVK 49 314 -45 8 1423 485 180 305 18 chr12 109957004 109957171 -11300359 + B3 SINE B2 24 216 0 8 1423 690 218 77 29 chr12 109957309 109957479 -11300051 - B4A SINE B4 -113 179 2 8 1423 645 267 8 0 chr12 109957726 109957857 -11299673 - B1_Mur4 SINE Alu -17 133 2 8 1423 355 248 0 125 chr12 109957754 109957874 -11299656 - MT2B LTR ERVL -344 257 153 8 1423 473 197 175 25 chr12 109957946 109958066 -11299464 + ID_B1 SINE B4 87 224 0 8 1423 960 90 6 83 chr12 109959122 109959172 -11298358 - ORR1A3 LTR MaLR -3 323 286 8 1423 1096 107 40 60 chr12 109959172 109959371 -11298159 - B2_Mm2 SINE B2 0 195 1 8 1423 960 90 6 83 chr12 109959371 109959477 -11298053 - ORR1A3 LTR MaLR -41 285 179 8 1423 466 75 30 0 chr12 109959474 109959541 -11297989 - ORR1A3 LTR MaLR -257 70 2 8 1423 572 269 56 7 chr12 109959542 109959684 -11297846 + RLTR18B LTR ERVK 358 506 -6 8 1423 399 326 26 39 chr12 109959684 109959837 -11297693 + RSINE1 SINE B4 14 164 -1 8 1423 644 62 0 0 chr12 109960057 109960137 -11297393 + B1_Mur4 SINE Alu 30 109 -41 8 1423 1810 194 56 11 chr12 109960146 109960505 -11297025 - Lx7 LINE L1 -306 7390 7016 8 1423 300 216 150 79 chr12 109960505 109960673 -11296857 - RLTR13D3 LTR ERVK -43 1071 900 8 1423 287 95 0 0 chr12 109960892 109960934 -11296596 - B2_Mm2 SINE B2 -153 42 1 8 1423 233 209 0 0 chr12 109961380 109961423 -11296107 - RLTR13D3 LTR ERVK -1071 43 1 8 1423 2156 152 44 102 chr12 109961425 109961856 -11295674 - Lx7 LINE L1 -678 7018 6613 8 1423 367 211 0 40 chr12 109961858 109961932 -11295598 - Lx7 LINE L1 -1045 6651 6581 8 1423 1738 171 90 7 chr12 109962347 109962648 -11294882 - Lx7 LINE L1 -1118 6578 6253 8 1423 2712 123 101 0 chr12 109962652 109963057 -11294473 + RLTR41 LTR ERV1 1 446 0 8 1423 1233 325 85 56 chr12 109964229 109965379 -11292151 + RLTR6-int LTR ERV1 1379 2562 -5216 8 1423 2201 305 46 52 chr12 109965390 109966694 -11290836 + MuRRS4-int LTR ERV1 2929 5300 -2306 8 1423 5711 79 45 9 chr12 109966817 109968334 -11289196 + L1VL2 LINE L1 237 1808 -1807 8 1423 1096 69 14 20 chr12 109968347 109968495 -11289035 - B1_Mus1 SINE Alu 0 148 2 8 1423 308 315 0 0 chr12 109968671 109968760 -11288770 - PB1D10 SINE Alu -2 115 27 8 177 243 0 0 0 chr12 109969397 109969424 -11288106 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1424 28 71 0 0 chr12 109969424 109969480 -11288050 + AT_rich Low_complexity Low_complexity 1 56 0 8 1424 22 56 0 0 chr12 109969631 109969667 -11287863 + AT_rich Low_complexity Low_complexity 1 36 0 8 1424 229 239 68 0 chr12 109969773 109969861 -11287669 + L1M2 LINE L1 2745 2838 -3305 8 1424 3622 147 117 22 chr12 109969861 109970769 -11286761 + RMER16-int LTR ERVK 1653 3319 -4087 8 1424 472 188 40 0 chr12 109970775 109970876 -11286654 + RMER16-int LTR ERVK 2610 2714 -2692 8 1424 4886 155 35 37 chr12 109970864 109971846 -11285684 + RMER16-int LTR ERVK 2864 3825 -1581 8 1424 1197 55 7 0 chr12 109971849 109971994 -11285536 + B1_Mus2 SINE Alu 2 147 0 8 1424 252 185 0 0 chr12 109971994 109972048 -11285482 + A-rich Low_complexity Low_complexity 1 54 0 8 1424 779 218 14 0 chr12 109972049 109972196 -11285334 + ETnERV2-int LTR ERVK 6006 6154 -1252 8 1424 998 134 34 23 chr12 109972203 109972379 -11285151 + RLTR9A LTR ERVK 191 368 0 8 1424 673 130 97 24 chr12 109972379 109972502 -11285028 - ORR1A3 LTR MaLR -209 117 1 8 1424 606 108 32 0 chr12 109972502 109972595 -11284935 - L1_Mur3 LINE L1 -1363 4517 4422 8 1424 256 105 0 0 chr12 109972624 109972662 -11284868 - L1_Mur3 LINE L1 -1894 3986 3949 8 1424 1206 189 16 25 chr12 109972680 109972924 -11284606 - RLTR11A LTR ERVK -286 242 1 8 1424 5551 172 41 86 chr12 109972924 109973942 -11283588 - L1_Mur3 LINE L1 -1924 3956 3024 8 1424 1345 87 0 31 chr12 109973942 109974133 -11283397 + B2_Mm2 SINE B2 2 186 -9 8 1424 5551 172 41 86 chr12 109974133 109974569 -11282961 - L1_Mur3 LINE L1 -2857 3023 2568 8 1424 764 183 0 0 chr12 109974600 109974720 -11282810 + B3 SINE B2 4 123 -93 9 1424 899 174 0 7 chr12 109974913 109975063 -11282467 + B1_Mur4 SINE Alu 1 149 -1 9 1424 1216 62 0 0 chr12 109975188 109975334 -11282196 - B1_Mm SINE Alu 0 147 2 9 1424 249 305 0 0 chr12 109975713 109975795 -11281735 + (CAT)n Simple_repeat Simple_repeat 2 83 0 9 1424 1006 107 7 32 chr12 109975918 109976072 -11281458 - B1_Mur4 SINE Alu 0 150 1 9 1424 619 233 159 10 chr12 109976125 109976320 -11281210 - ID_B1 SINE B4 0 224 1 9 1424 25 83 0 0 chr12 109976380 109976440 -11281090 + AT_rich Low_complexity Low_complexity 1 60 0 9 1424 319 184 61 0 chr12 109976450 109976564 -11280966 + (TA)n Simple_repeat Simple_repeat 1 121 0 9 1424 969 169 0 0 chr12 109976583 109976731 -11280799 - B1_Mur4 SINE Alu -1 149 2 9 1424 4388 151 72 47 chr12 109976778 109977629 -11279901 + RMER19B LTR ERVK 1 872 -30 9 1424 1060 52 7 0 chr12 109977629 109977765 -11279765 + B1_Mm SINE Alu 10 146 -1 9 1424 1998 9 9 0 chr12 109977778 109978008 -11279522 - L1Md_F3 LINE L1 -647 5937 5706 9 1424 4971 28 7 0 chr12 109978008 109978584 -11278946 + L1Md_F3 LINE L1 5991 6570 -14 9 1424 829 160 104 0 chr12 109978652 109978796 -11278734 - B3 SINE B2 -57 159 1 9 1424 405 0 0 0 chr12 109978807 109978852 -11278678 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 9 1424 1169 49 0 7 chr12 109978853 109978996 -11278534 - B1_Mus1 SINE Alu -6 142 1 9 1424 238 338 0 0 chr12 109979266 109979343 -11278187 + B3 SINE B2 6 82 -134 9 1424 300 214 100 31 chr12 109979545 109979675 -11277855 + RLTR15 LTR ERVK 1 139 -220 9 1424 402 271 83 52 chr12 109979708 109979938 -11277592 + RLTR15 LTR ERVK 100 336 -23 9 1424 770 156 62 28 chr12 109980216 109980361 -11277169 + B1_Mur4 SINE Alu 1 150 0 9 1424 22 0 0 0 chr12 109980362 109980384 -11277146 + AT_rich Low_complexity Low_complexity 1 22 0 9 1424 441 236 21 1 chr12 109980420 109980524 -11277006 + B1F2 SINE Alu 13 116 -1 9 1424 705 269 223 28 chr12 109980645 109980907 -11276623 + Lx7 LINE L1 7036 7357 -339 9 1424 186 43 0 0 chr12 109980907 109980930 -11276600 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 9 1424 705 269 223 28 chr12 109980930 109980985 -11276545 + Lx7 LINE L1 7358 7414 -282 9 1424 274 239 31 100 chr12 109980998 109981128 -11276402 + Lx7 LINE L1 7563 7683 -13 9 1424 4313 91 5 10 chr12 109981129 109981728 -11275802 - Lx3B LINE L1 -683 6290 5695 9 1424 4698 102 14 0 chr12 109981728 109982392 -11275138 + Lx3A LINE L1 6303 6975 -6 9 1424 612 241 0 0 chr12 109982412 109982528 -11275002 - B1_Mur1 SINE Alu 0 149 34 9 1424 966 8 42 0 chr12 109982558 109982677 -11274853 + B1_Mus1 SINE Alu 25 148 0 9 1424 3569 199 35 102 chr12 109982870 109983845 -11273685 - RMER17B LTR ERVK 0 958 84 9 1424 1636 26 16 0 chr12 109983845 109984034 -11273496 + B2_Mm1a SINE B2 2 193 0 9 1424 3569 179 23 100 chr12 109984034 109984146 -11273384 - RMER17B LTR ERVK -875 83 1 9 1424 263 235 93 12 chr12 109984241 109984327 -11273203 - RMER10B LTR ERVL -36 362 270 9 1424 184 30 0 57 chr12 109984635 109984670 -11272860 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 9 1424 669 186 40 0 chr12 109984670 109984794 -11272736 - B1_Mus2 SINE Alu -13 134 6 9 1424 919 126 0 12 chr12 109984918 109985079 -11272451 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 9 1424 2373 186 126 66 chr12 109985670 109986339 -11271191 - RMER6A LTR ERVK -1 755 47 9 1424 542 233 0 57 chr12 109986816 109986939 -11270591 - PB1D9 SINE Alu 0 120 5 9 1424 793 137 0 8 chr12 109987398 109987530 -11270000 + B1_Mus1 SINE Alu 10 140 -8 9 1424 465 201 137 4 chr12 109987566 109987731 -11269799 + MTC LTR MaLR 257 413 -8 9 1424 700 215 114 48 chr12 109987732 109987942 -11269588 + Lx8 LINE L1 6924 7147 -326 9 1424 982 211 0 60 chr12 109990823 109990945 -11266585 - B3 SINE B2 -11 205 96 9 1424 1466 53 26 11 chr12 109990945 109991105 -11266425 + B2_Mm1t SINE B2 1 160 -33 9 1424 243 0 0 0 chr12 109991105 109991132 -11266398 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 1424 1466 53 26 11 chr12 109991132 109991161 -11266369 + B2_Mm1t SINE B2 161 193 0 9 1424 982 211 0 60 chr12 109991161 109991255 -11266275 - B3 SINE B2 -121 95 2 9 1424 618 226 12 115 chr12 109991826 109991991 -11265539 - B1_Mur2 SINE Alu 0 149 2 9 1424 303 295 50 59 chr12 109991901 109992002 -11265528 - B4 SINE B4 -113 179 80 9 1424 459 0 0 0 chr12 109992010 109992061 -11265469 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 9 1424 1238 41 0 0 chr12 109992061 109992206 -11265324 - B1_Mus2 SINE Alu -2 145 1 9 1424 477 246 125 14 chr12 109992238 109992382 -11265148 - RSINE1 SINE B4 -2 163 4 9 1424 948 223 28 5 chr12 109992420 109992636 -11264894 - Lx9 LINE L1 -201 7443 7223 9 1424 471 147 8 41 chr12 109993078 109993199 -11264331 - L1Md_F2 LINE L1 0 6582 6466 9 1424 183 106 14 83 chr12 109993238 109993310 -11264220 + T-rich Low_complexity Low_complexity 2 68 0 9 1424 961 45 22 15 chr12 109993313 109993448 -11264082 - B1_Mus1 SINE Alu 0 148 13 9 1424 576 250 16 145 chr12 109993448 109993477 -11264053 - ID_B1 SINE B4 0 223 81 9 1424 261 0 0 0 chr12 109993477 109993506 -11264024 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1424 264 59 0 0 chr12 109993506 109993539 -11263991 + (CG)n Simple_repeat Simple_repeat 2 35 0 9 1424 576 256 16 138 chr12 109993539 109993629 -11263901 - ID SINE ID -144 80 2 9 1424 231 232 79 34 chr12 109993638 109993727 -11263803 + PB1D9 SINE Alu 27 119 -1 9 1424 662 286 29 0 chr12 109993754 109993929 -11263601 + B3A SINE B2 17 196 -2 9 1424 1110 82 14 0 chr12 109994324 109994470 -11263060 + B1_Mur3 SINE Alu 2 149 0 9 1424 1450 71 16 0 chr12 109994514 109994698 -11262832 + B2_Mm2 SINE B2 1 187 -8 9 1424 25 31 0 0 chr12 109994727 109994759 -11262771 + AT_rich Low_complexity Low_complexity 1 32 0 9 1424 441 308 30 42 chr12 109995107 109995273 -11262257 + RSINE1 SINE B4 2 165 0 9 1424 1261 105 5 20 chr12 109995319 109995475 -11262055 + B2_Mm2 SINE B2 2 157 -38 9 1424 222 37 0 0 chr12 109995475 109995502 -11262028 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 1424 1261 105 5 20 chr12 109995502 109995540 -11261990 + B2_Mm2 SINE B2 158 192 -3 9 1424 421 97 0 40 chr12 109995658 109995733 -11261797 - B1_Mur4 SINE Alu -4 146 75 9 1424 234 0 0 0 chr12 109996439 109996465 -11261065 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1424 871 255 222 57 chr12 109996642 109996975 -11260555 - MTD LTR MaLR -1 418 31 9 1424 1238 55 0 0 chr12 109997421 109997567 -11259963 - B1_Mm SINE Alu 0 147 2 9 1424 503 241 8 8 chr12 109998029 109998146 -11259384 - PB1D10 SINE Alu 0 117 1 9 1424 560 277 82 126 chr12 109998237 109998506 -11259024 - B4A SINE B4 -10 282 26 9 1424 354 98 0 0 chr12 109998761 109998812 -11258718 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 9 1424 385 233 39 10 chr12 109998834 109998938 -11258592 - B3A SINE B2 -26 190 84 9 1424 861 284 184 23 chr12 109998956 109999340 -11258190 + MMAR1 DNA Mariner 833 1278 -8 9 1424 459 181 112 19 chr12 109999387 109999494 -11258036 + PB1D9 SINE Alu 2 118 -2 9 1424 560 202 19 0 chr12 109999771 109999875 -11257655 + B3A SINE B2 2 107 -91 9 1424 369 0 0 0 chr12 109999886 109999927 -11257603 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1424 26 50 0 0 chr12 109999938 109999978 -11257552 + AT_rich Low_complexity Low_complexity 1 40 0 9 1424 1221 68 0 0 chr12 110000323 110000471 -11257059 + B1_Mus1 SINE Alu 1 148 0 1 1424 1298 52 17 0 chr12 110000493 110000666 -11256864 + (GGGAGA)n Simple_repeat Simple_repeat 4 179 0 2 1424 310 118 0 56 chr12 110000666 110000705 -11256825 + polypurine Low_complexity Low_complexity 12 48 0 3 1424 888 128 0 0 chr12 110000705 110000884 -11256646 + (GAA)n Simple_repeat Simple_repeat 2 180 0 4 1424 310 118 0 56 chr12 110000884 110000905 -11256625 + polypurine Low_complexity Low_complexity 49 69 0 5 1424 407 323 45 30 chr12 110001851 110001985 -11255545 + B3A SINE B2 36 171 -27 6 1424 282 186 17 0 chr12 110002527 110002586 -11254944 + Ricksha_c DNA MuDR 372 431 -1617 7 1424 425 223 125 0 chr12 110002638 110002750 -11254780 + Ricksha_c DNA MuDR 639 764 -1284 7 1424 1374 89 11 5 chr12 110002966 110003157 -11254373 - B2_Mm1t SINE B2 -1 192 1 8 1424 532 196 29 101 chr12 110005503 110005532 -11251998 - ID_B1 SINE B4 -51 241 213 9 1424 213 39 0 0 chr12 110005532 110005558 -11251972 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 1 1424 993 40 0 0 chr12 110005561 110005687 -11251843 - B1_Mus1 SINE Alu -11 137 12 1 1424 366 195 89 89 chr12 110005585 110005720 -11251810 - MT2B LTR ERVL -337 264 130 1 1424 532 184 9 77 chr12 110005687 110005699 -11251831 - ID_B1 SINE B4 -77 212 84 9 1424 1207 124 11 0 chr12 110005763 110005940 -11251590 + B2_Mm1t SINE B2 1 179 -14 1 1424 433 82 148 40 chr12 110005969 110006070 -11251460 + B2_Mm2 SINE B2 48 180 -13 1 1424 1291 21 0 0 chr12 110006070 110006215 -11251315 + B1_Mm SINE Alu 1 145 -2 1 1424 315 113 319 86 chr12 110006215 110006231 -11251299 + B2_Mm1t SINE B2 181 193 0 1 1424 210 91 0 0 chr12 110006231 110006264 -11251266 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1424 1029 62 139 0 chr12 110006268 110006412 -11251118 - B2_Mm2 SINE B2 -31 164 1 1 1424 686 191 32 0 chr12 110007199 110007325 -11250205 + B3 SINE B2 1 130 -86 1 1424 1080 88 0 39 chr12 110007387 110007540 -11249990 + B1_Mm SINE Alu 1 147 0 1 1424 474 101 0 0 chr12 110007540 110007609 -11249921 + (GGA)n Simple_repeat Simple_repeat 3 71 0 2 1424 1350 96 0 3 chr12 110007609 110007965 -11249565 + (GAA)n Simple_repeat Simple_repeat 1 355 0 2 1424 461 301 72 148 chr12 110007974 110008278 -11249252 + B4A SINE B4 1 281 -11 2 1424 384 77 0 0 chr12 110008880 110008932 -11248598 + (TATG)n Simple_repeat Simple_repeat 3 54 0 2 1424 1629 193 118 63 chr12 110009129 110009771 -11247759 - MYSERV6-int LTR ERVK -54 8905 8246 2 1424 542 142 65 9 chr12 110009773 110009880 -11247650 - MYSERV6-int LTR ERVK -771 5779 5667 2 1424 4101 78 76 0 chr12 110009926 110010468 -11247062 - MT2B2 LTR ERVL -1 583 1 2 1424 424 253 98 23 chr12 110010515 110010692 -11246838 - RMER4A LTR ERVK -28 557 255 2 1424 1302 102 11 0 chr12 110010754 110010930 -11246600 - B2_Mm1t SINE B2 -14 179 2 2 1424 2290 129 183 26 chr12 110010930 110011374 -11246156 - RLTR12A LTR ERVK -52 516 2 2 1424 2090 244 127 23 chr12 110011374 110012067 -11245463 - MYSERV-int LTR ERVK -1542 5008 4244 2 1424 4200 254 48 22 chr12 110012119 110012300 -11245230 - MYSERV6-int LTR ERVK -393 4867 4680 3 1424 1694 26 5 0 chr12 110012300 110012492 -11245038 - B2_Mm1t SINE B2 0 193 1 3 1424 4200 254 48 22 chr12 110012492 110013454 -11244076 - MYSERV6-int LTR ERVK -581 4679 3694 3 1424 1205 94 0 12 chr12 110013479 110013651 -11243879 - B2_Mm2 SINE B2 -25 170 1 3 1424 8142 251 35 38 chr12 110013651 110016080 -11241450 - MYSERV6-int LTR ERVK -5785 3174 754 3 1424 651 306 115 61 chr12 110016080 110016566 -11240964 - RMER20B LTR ERVK 0 516 1 3 1424 625 263 61 20 chr12 110016567 110016765 -11240765 - MYSERV6-int LTR ERVK -8201 758 553 3 1424 400 81 324 9 chr12 110017795 110017906 -11239624 - B2_Mm2 SINE B2 -2 193 48 3 1424 1326 90 11 0 chr12 110017920 110018097 -11239433 - B2_Mm1t SINE B2 -14 179 1 3 1424 2183 102 42 11 chr12 110018750 110019120 -11238410 - ORR1A4 LTR MaLR -8 386 1 3 1424 7720 142 113 72 chr12 110019121 110020549 -11236981 - ORR1A4-int LTR MaLR -193 1770 674 3 1424 2838 52 6 3 chr12 110020549 110020894 -11236636 + ORR1A1 LTR MaLR 1 346 0 3 1424 7720 144 113 95 chr12 110020894 110020990 -11236540 - ORR1A4-int LTR MaLR -1290 673 557 3 1424 1259 99 0 131 chr12 110020990 110021211 -11236319 + B2_Mm2 SINE B2 1 192 -3 3 1424 7720 144 113 95 chr12 110021211 110021414 -11236116 - ORR1A4-int LTR MaLR -1407 556 283 3 1424 198 0 0 0 chr12 110021414 110021436 -11236094 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1424 7720 144 113 95 chr12 110021436 110021682 -11235848 - ORR1A4-int LTR MaLR -1681 282 2 3 1424 2085 89 14 0 chr12 110021683 110021975 -11235555 - ORR1A4 LTR MaLR -2 327 32 3 1424 673 149 195 7 chr12 110022096 110022245 -11235285 - MTD LTR MaLR -22 397 221 4 1424 225 302 232 50 chr12 110022279 110022460 -11235070 + B4 SINE B4 79 292 0 4 1424 531 296 18 48 chr12 110022905 110022936 -11234594 - B3 SINE B2 -27 189 163 4 1424 3528 33 0 0 chr12 110022936 110023332 -11234198 + MTA_Mm LTR MaLR 1 396 0 4 1424 531 296 18 48 chr12 110023332 110023467 -11234063 - B3 SINE B2 -54 162 28 4 1424 308 215 62 25 chr12 110023472 110023553 -11233977 - ID_B1 SINE B4 -8 216 133 4 1424 228 315 60 51 chr12 110023553 110023585 -11233945 - PB1 SINE Alu -3 120 7 4 1424 836 148 0 43 chr12 110023672 110023813 -11233717 - B1_Mus1 SINE Alu -2 146 12 4 1424 391 204 17 127 chr12 110023720 110023838 -11233692 - MT2B LTR ERVL -344 257 153 4 1424 937 239 5 10 chr12 110024175 110024378 -11233152 + B3 SINE B2 2 203 -13 4 1424 1570 195 86 14 chr12 110024836 110025184 -11232346 + MTD LTR MaLR 47 419 0 4 1424 278 259 193 9 chr12 110026030 110026139 -11231391 + B1F SINE Alu 5 133 -16 5 1424 504 241 97 57 chr12 110026341 110026517 -11231013 + B3A SINE B2 1 183 -15 5 1424 610 211 96 43 chr12 110027522 110027710 -11229820 + B3A SINE B2 1 198 0 5 1424 427 230 19 29 chr12 110028658 110028761 -11228769 + PB1D10 SINE Alu 4 105 -12 5 1424 401 239 34 50 chr12 110028872 110028991 -11228539 - PB1D10 SINE Alu 0 117 1 5 1424 615 189 48 32 chr12 110029037 110029163 -11228367 + B1_Mur2 SINE Alu 2 129 -20 5 1424 1154 75 0 0 chr12 110029459 110029605 -11227925 - B1_Mus1 SINE Alu -1 147 2 5 1424 181 135 0 37 chr12 110031443 110031497 -11226033 + C-rich Low_complexity Low_complexity 4 55 0 5 1424 225 108 0 0 chr12 110031780 110031817 -11225713 + (CGG)n Simple_repeat Simple_repeat 1 37 0 5 1424 321 26 0 0 chr12 110031831 110031869 -11225661 + (CCA)n Simple_repeat Simple_repeat 2 39 0 5 1424 205 318 15 22 chr12 110032084 110032219 -11225311 + (CGG)n Simple_repeat Simple_repeat 3 136 0 6 1424 22 35 0 0 chr12 110032447 110032476 -11225054 + GC_rich Low_complexity Low_complexity 1 29 0 6 1424 23 78 0 0 chr12 110032651 110032702 -11224828 + GC_rich Low_complexity Low_complexity 1 51 0 6 1424 565 197 68 16 chr12 110034551 110034692 -11222838 - B1_Mus2 SINE Alu 0 150 2 6 1424 2053 187 189 2 chr12 110034974 110035456 -11222074 - RMER15 LTR ERVL 0 575 4 6 1424 617 188 63 35 chr12 110035484 110035627 -11221903 - B1_Mur1 SINE Alu -1 148 2 6 1424 228 237 34 0 chr12 110035773 110035832 -11221698 - L1MB7 LINE L1 -241 5943 5883 6 1424 21 36 0 0 chr12 110036040 110036068 -11221462 + AT_rich Low_complexity Low_complexity 1 28 0 6 1424 1207 61 0 0 chr12 110036343 110036490 -11221040 - B1_Mus2 SINE Alu 0 147 1 6 1424 294 29 0 0 chr12 110037096 110037131 -11220399 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1424 577 234 38 30 chr12 110037394 110037526 -11220004 - RSINE1 SINE B4 -31 134 2 7 1424 390 283 153 11 chr12 110037704 110037893 -11219637 + B3 SINE B2 1 216 0 7 1424 336 299 51 125 chr12 110038062 110038238 -11219292 + RSINE1 SINE B4 3 165 0 7 1424 625 151 167 0 chr12 110038379 110038505 -11219025 - B1_Mus2 SINE Alu 0 147 1 7 1424 451 223 109 68 chr12 110038881 110039073 -11218457 + MLT1D LTR MaLR 108 307 -198 7 1424 677 151 76 38 chr12 110039279 110039410 -11218120 + B1_Mur2 SINE Alu 2 137 -12 7 1424 348 24 0 0 chr12 110040276 110040317 -11217213 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1424 326 23 0 23 chr12 110040592 110040636 -11216894 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1424 228 263 49 62 chr12 110040637 110040718 -11216812 + PB1D10 SINE Alu 22 101 -16 7 1424 438 164 0 40 chr12 110040749 110040825 -11216705 + B3A SINE B2 1 73 -125 7 1424 542 240 63 37 chr12 110041575 110041765 -11215765 - B3A SINE B2 -3 195 1 8 1424 496 241 26 26 chr12 110041773 110041888 -11215642 - PB1D9 SINE Alu -3 117 3 8 1424 595 241 132 29 chr12 110041890 110042095 -11215435 - B4 SINE B4 -64 228 3 8 1424 653 66 0 11 chr12 110042105 110042197 -11215333 + (TTTCC)n Simple_repeat Simple_repeat 5 95 0 8 1424 1114 109 47 42 chr12 110042198 110042219 -11215311 - B2_Mm1a SINE B2 0 193 169 8 1424 252 0 0 0 chr12 110042219 110042247 -11215283 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 8 1424 1114 109 47 42 chr12 110042247 110042417 -11215113 - B2_Mm1a SINE B2 -25 168 1 8 1424 546 293 88 26 chr12 110042669 110042862 -11214668 - ID_B1 SINE B4 -11 213 9 8 1424 345 47 0 0 chr12 110043191 110043234 -11214296 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 1424 1027 88 15 0 chr12 110043260 110043396 -11214134 - B1_Mus1 SINE Alu -8 140 3 8 1424 264 340 50 57 chr12 110043613 110043772 -11213758 + MIRb SINE MIR 73 230 -38 8 1424 304 211 197 0 chr12 110043832 110043903 -11213627 + PB1D7 SINE Alu 13 97 -23 9 1424 804 154 19 77 chr12 110044052 110044207 -11213323 - B1_Mur4 SINE Alu 0 150 5 9 1424 398 235 69 0 chr12 110045818 110045920 -11211610 - PB1D10 SINE Alu -8 109 1 9 1424 332 247 12 12 chr12 110047654 110047736 -11209794 + ID_B1 SINE B4 143 224 0 9 1424 554 195 89 0 chr12 110047745 110047868 -11209662 + B1_Mur4 SINE Alu 4 137 -13 9 1424 519 200 0 48 chr12 110048075 110048180 -11209350 + PB1D10 SINE Alu 2 101 -16 9 1424 197 276 39 13 chr12 110048252 110048329 -11209201 + L3 LINE CR1 2074 2152 -2337 9 1424 306 164 49 0 chr12 110048875 110048936 -11208594 - MIRc SINE MIR -126 142 79 9 1424 254 327 50 0 chr12 110049229 110049330 -11208200 + PB1D10 SINE Alu 5 110 -7 9 1424 713 170 0 69 chr12 110049353 110049498 -11208032 + B1_Mus1 SINE Alu 1 135 -13 9 1424 794 204 0 7 chr12 110050317 110050465 -11207065 + B1_Mur4 SINE Alu 3 149 -1 1 1424 294 73 0 0 chr12 110051072 110051113 -11206417 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1424 583 149 103 71 chr12 110052457 110052659 -11204871 + MIR3 SINE MIR 2 207 -1 1 1424 856 148 114 40 chr12 110059404 110059580 -11197950 - B2_Mm2 SINE B2 -5 190 2 1 1424 419 151 198 45 chr12 110059669 110059780 -11197750 + B1_Mur3 SINE Alu 1 128 -21 1 1424 445 211 129 8 chr12 110060683 110060807 -11196723 + ID_B1 SINE B4 86 224 0 1 1424 899 175 169 0 chr12 110060901 110061078 -11196452 - B3 SINE B2 -7 209 3 1 1424 1592 32 27 0 chr12 110061101 110061289 -11196241 - B2_Mm1t SINE B2 0 193 1 1 1424 582 294 0 47 chr12 110061675 110061846 -11195684 - RSINE1 SINE B4 0 165 3 1 1424 259 272 74 0 chr12 110062333 110062414 -11195116 + PB1D10 SINE Alu 5 91 -26 1 1424 285 299 65 0 chr12 110062434 110062511 -11195019 + ID4_ SINE ID 2 83 0 1 1424 217 176 0 89 chr12 110062740 110062796 -11194734 + PB1D10 SINE Alu 67 117 0 1 1424 480 316 45 6 chr12 110062855 110063011 -11194519 + RSINE1 SINE B4 3 164 -1 1 1424 378 224 40 0 chr12 110066637 110066713 -11190817 + ID4 SINE ID 2 80 -3 1 1424 1195 200 5 0 chr12 110066721 110066926 -11190604 + B3 SINE B2 1 206 -10 1 1424 1261 203 113 32 chr12 110067563 110067935 -11189595 - RMER17C LTR ERVK -8 402 1 1 1424 286 272 75 28 chr12 110068657 110068763 -11188767 - PB1D7 SINE Alu -9 111 1 1 1424 704 179 230 6 chr12 110068923 110069097 -11188433 + B3 SINE B2 1 213 -3 1 1424 414 0 0 0 chr12 110069860 110069906 -11187624 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1424 338 216 8 0 chr12 110069926 110070051 -11187479 + CT-rich Low_complexity Low_complexity 1 126 0 1 1424 468 231 0 0 chr12 110070843 110070934 -11186596 - B1_Mur1 SINE Alu 0 149 59 1 1424 283 295 107 73 chr12 110075503 110075533 -11181997 - ID_B1 SINE B4 -11 213 166 1 1424 343 200 26 13 chr12 110075533 110075609 -11181921 - PB1D10 SINE Alu -9 108 32 1 1424 283 295 107 73 chr12 110075609 110075708 -11181822 - ID_B1 SINE B4 -11 165 2 1 1424 1173 96 0 2 chr12 110076818 110077370 -11180160 + (CA)n Simple_repeat Simple_repeat 1 551 0 1 1424 29 47 0 0 chr12 110077475 110077518 -11180012 + AT_rich Low_complexity Low_complexity 1 43 0 1 1424 1059 105 0 0 chr12 110077520 110077674 -11179856 + B2_Mm2 SINE B2 2 156 -37 1 1424 423 0 0 0 chr12 110077674 110077721 -11179809 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1 1424 968 161 17 0 chr12 110077721 110077740 -11179790 + B2_Mm1t SINE B2 157 177 -16 1 1424 722 207 7 0 chr12 110077750 110077885 -11179645 + B3A SINE B2 1 136 -62 1 1424 369 0 0 0 chr12 110077890 110077931 -11179599 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1424 565 228 35 9 chr12 110077969 110078084 -11179446 + B1F2 SINE Alu 2 119 -30 1 1424 1310 192 142 166 chr12 110078084 110078108 -11179422 - MT2A LTR ERVL 0 533 515 1 1424 1037 111 189 5 chr12 110078108 110078298 -11179232 + URR1B DNA MER1_type 1 225 0 1 1424 1310 192 142 166 chr12 110078298 110078352 -11179178 - MT2A LTR ERVL -19 514 476 1 1424 291 122 0 0 chr12 110078352 110078401 -11179129 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1424 1310 192 142 166 chr12 110078401 110078756 -11178774 - MT2A LTR ERVL -58 475 93 1 1424 1639 43 0 0 chr12 110078756 110078944 -11178586 - B2_Mm1t SINE B2 -4 189 2 1 1424 1310 192 142 166 chr12 110078944 110079051 -11178479 - MT2A LTR ERVL -441 92 4 1 1424 356 312 138 7 chr12 110079097 110079242 -11178288 + RSINE1 SINE B4 2 165 0 1 1424 266 214 30 119 chr12 110079348 110079449 -11178081 + B1F1 SINE Alu 28 119 -30 1 1424 447 35 0 0 chr12 110080085 110080142 -11177388 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1424 557 267 37 90 chr12 110081111 110081300 -11176230 + B3A SINE B2 1 179 -37 1 1424 2427 68 5 24 chr12 110081303 110081697 -11175833 + L1M4 LINE L1 3546 3914 0 1 1424 243 235 20 0 chr12 110081709 110081760 -11175770 + MLT1F1 LTR MaLR 13 64 -505 1 1424 428 200 0 0 chr12 110081760 110081835 -11175695 + ID4 SINE ID 1 75 -8 1 1424 2493 55 3 110 chr12 110081984 110082349 -11175181 - ORR1A2 LTR MaLR 0 327 2 1 1424 706 249 16 48 chr12 110082490 110082676 -11174854 + B3A SINE B2 1 180 -18 1 1424 1267 94 32 37 chr12 110082676 110082864 -11174666 + B2_Mm2 SINE B2 3 189 -6 1 1424 258 291 0 0 chr12 110082957 110083012 -11174518 + B1F SINE Alu 2 56 -93 1 1424 470 258 76 23 chr12 110083012 110083143 -11174387 - ID_B1 SINE B4 -3 221 84 1 1424 228 307 55 33 chr12 110083435 110083526 -11174004 - MIRm SINE MIR -110 166 74 1 1424 200 254 18 0 chr12 110083857 110083912 -11173618 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 1 1424 276 312 36 14 chr12 110083959 110084029 -11173501 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1 1424 2239 57 91 63 chr12 110084029 110084347 -11173183 - ORR1A2 LTR MaLR 0 327 1 1 1424 276 312 36 14 chr12 110084347 110084416 -11173114 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 1 1424 1164 68 0 26 chr12 110084432 110084583 -11172947 - B1_Mus1 SINE Alu 0 148 2 1 1424 297 118 0 0 chr12 110084623 110084674 -11172856 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 1 1424 622 206 14 51 chr12 110085371 110085509 -11172021 - RSINE1 SINE B4 -30 135 3 1 1424 966 187 17 103 chr12 110085594 110085827 -11171703 - ORR1C2 LTR MaLR 0 384 172 1 1424 462 166 19 31 chr12 110085830 110086093 -11171437 + (CAGAGA)n Simple_repeat Simple_repeat 1 260 0 1 1424 656 216 162 0 chr12 110086097 110086264 -11171266 - ORR1C2 LTR MaLR -190 194 1 1 1424 826 47 0 0 chr12 110086599 110086705 -11170825 + B1_Mus2 SINE Alu 1 106 -41 1 1424 3489 23 5 2 chr12 110087154 110087549 -11169981 + MTA_Mm LTR MaLR 1 396 0 1 1424 1145 83 0 0 chr12 110087599 110087743 -11169787 + B1_Mus1 SINE Alu 5 148 0 1 1424 189 0 0 0 chr12 110087743 110087764 -11169766 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1424 910 56 0 24 chr12 110090447 110090574 -11166956 - B1_Mus1 SINE Alu 0 148 25 1 1424 348 242 0 143 chr12 110090495 110090635 -11166895 - MT2B LTR ERVL -344 257 138 1 1424 193 294 85 38 chr12 110091150 110091256 -11166274 - MIRb SINE MIR -91 177 67 1 1424 181 260 0 57 chr12 110092655 110092708 -11164822 - MIRm SINE MIR -115 161 112 1 1424 705 201 27 40 chr12 110096466 110096616 -11160914 - B1_Mur1 SINE Alu 0 149 2 1 1424 416 257 39 10 chr12 110096778 110096880 -11160650 - B1F SINE Alu -43 106 2 1 1424 337 267 0 0 chr12 110098780 110098855 -11158675 - ID4 SINE ID -4 79 5 1 1424 338 281 71 52 chr12 110099803 110099957 -11157573 + Lx7 LINE L1 7515 7671 -25 1 1424 532 241 78 0 chr12 110100157 110100273 -11157257 + B1F SINE Alu 16 140 -9 1 1425 498 248 10 0 chr12 110100777 110100878 -11156652 - U6 snRNA snRNA -4 103 2 1 1425 1000 149 192 6 chr12 110101576 110101758 -11155772 + B3 SINE B2 1 216 0 1 1425 877 219 102 0 chr12 110101782 110101978 -11155552 + B3 SINE B2 1 216 0 1 1425 436 211 18 19 chr12 110101998 110102122 -11155408 + PB1 SINE Alu 1 124 -3 1 1425 400 243 24 65 chr12 110102136 110102259 -11155271 + PB1D7 SINE Alu 1 118 -2 1 1425 317 295 35 18 chr12 110102554 110102668 -11154862 + MER21B LTR ERV1 503 618 -245 1 1425 326 231 120 2 chr12 110103701 110103806 -11153724 + B1_Mur3 SINE Alu 2 119 -1 1 1425 192 40 0 0 chr12 110105318 110105343 -11152187 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1 1425 460 269 29 0 chr12 110105351 110105455 -11152075 - B1_Mus2 SINE Alu -40 107 1 1 1425 264 291 11 44 chr12 110105376 110105466 -11152064 - MT2B2 LTR ERVL -345 239 153 1 1425 310 256 11 44 chr12 110106554 110106644 -11150886 - B3 SINE B2 0 216 130 1 1425 1841 171 96 90 chr12 110106808 110107655 -11149875 + RMER19B LTR ERVK 1 902 0 1 1425 943 185 17 0 chr12 110107892 110108065 -11149465 + B3 SINE B2 8 183 -33 1 1425 871 200 176 15 chr12 110108076 110108363 -11149167 + ORR1C2 LTR MaLR 11 394 0 1 1425 2252 168 57 17 chr12 110110350 110110755 -11146775 + MTC LTR MaLR 1 421 0 1 1425 1284 64 0 2 chr12 110111021 110111430 -11146100 + (GGA)n Simple_repeat Simple_repeat 1 407 0 1 1425 279 0 0 0 chr12 110111444 110111475 -11146055 + (CAG)n Simple_repeat Simple_repeat 2 32 0 1 1425 402 230 86 34 chr12 110111858 110111975 -11145555 + RSINE1 SINE B4 2 124 -41 1 1425 393 281 0 19 chr12 110112035 110112140 -11145390 - PB1D9 SINE Alu -8 112 10 1 1425 272 239 60 0 chr12 110112488 110112555 -11144975 - ID4 SINE ID -9 74 4 1 1425 313 268 8 43 chr12 110112728 110112845 -11144685 - PB1D10 SINE Alu -1 116 4 1 1425 322 278 54 89 chr12 110114155 110114243 -11143287 + MT2B LTR ERVL 62 156 -428 1 1425 559 188 28 20 chr12 110114243 110114366 -11143164 + B1_Mur2 SINE Alu 2 117 -3 1 1425 990 225 134 20 chr12 110115091 110115345 -11142185 - B4 SINE B4 -7 285 3 1 1425 557 28 0 14 chr12 110115360 110115432 -11142098 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 1 1425 525 128 0 0 chr12 110115435 110115511 -11142019 + (TCC)n Simple_repeat Simple_repeat 1 76 0 1 1425 751 154 29 29 chr12 110115511 110115651 -11141879 - B1_Mur2 SINE Alu -8 141 2 1 1425 525 128 0 0 chr12 110115651 110115660 -11141870 + (TCC)n Simple_repeat Simple_repeat 1 9 0 1 1425 545 296 21 0 chr12 110115822 110115964 -11141566 + ID_B1 SINE B4 77 221 -3 1 1425 243 79 0 0 chr12 110116067 110116105 -11141425 + (TCTG)n Simple_repeat Simple_repeat 4 41 0 1 1425 514 272 17 9 chr12 110116119 110116234 -11141296 - ID_B1 SINE B4 -17 207 92 1 1425 284 228 63 0 chr12 110116243 110116322 -11141208 - PB1D10 SINE Alu -1 116 33 1 1425 630 155 154 8 chr12 110116362 110116492 -11141038 - B1_Mur2 SINE Alu 0 149 1 1 1425 400 219 0 0 chr12 110116800 110116873 -11140657 + RSINE1 SINE B4 60 132 -33 2 1425 309 258 60 104 chr12 110117014 110117148 -11140382 + B1_Mur1 SINE Alu 21 148 -1 2 1425 389 308 50 25 chr12 110117325 110117485 -11140045 + RMER5 LTR ERV1 128 291 -243 2 1425 497 202 68 30 chr12 110117525 110117658 -11139872 + RMER5 LTR ERV1 397 534 0 2 1425 392 216 171 8 chr12 110117658 110117775 -11139755 + L1M4 LINE L1 4590 4725 -1421 2 1425 567 252 7 7 chr12 110117801 110117937 -11139593 - ID_B1 SINE B4 -8 216 81 2 1425 355 281 72 17 chr12 110117937 110118118 -11139412 + L1MB7 LINE L1 5991 6181 -3 2 1425 565 227 87 0 chr12 110118144 110118294 -11139236 - RSINE1 SINE B4 0 165 3 2 1425 288 0 0 0 chr12 110118312 110118344 -11139186 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1425 715 155 46 12 chr12 110118345 110118479 -11139051 - B1_Mur2 SINE Alu -13 136 2 2 1425 281 221 20 131 chr12 110118392 110118491 -11139039 - MT2B LTR ERVL -361 240 153 2 1425 444 308 12 42 chr12 110118513 110118679 -11138851 - RSINE1 SINE B4 -2 163 3 2 1425 294 29 0 0 chr12 110119616 110119651 -11137879 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1425 393 293 75 0 chr12 110120001 110120134 -11137396 - ID_B1 SINE B4 -1 223 81 2 1425 608 250 174 4 chr12 110120248 110120371 -11137159 + L1MA6 LINE L1 5643 5788 -512 2 1425 201 39 0 0 chr12 110120371 110120397 -11137133 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1425 608 250 174 4 chr12 110120397 110120526 -11137004 + L1MA6 LINE L1 5789 5937 -363 2 1425 302 304 40 0 chr12 110120599 110120751 -11136779 + L1MA6 LINE L1 6083 6239 -61 2 1425 723 188 172 27 chr12 110121644 110121678 -11135852 - B3 SINE B2 0 216 179 2 1425 429 20 0 0 chr12 110121678 110121728 -11135802 + (TATG)n Simple_repeat Simple_repeat 4 53 0 2 1425 723 188 172 27 chr12 110121728 110121879 -11135651 - B3 SINE B2 -38 178 5 2 1425 591 248 15 9 chr12 110121919 110122060 -11135470 + ID_B1 SINE B4 103 246 -46 2 1425 448 142 73 2 chr12 110122842 110122934 -11134596 + PB1D9 SINE Alu 21 123 -4 2 1425 436 294 22 7 chr12 110124345 110124482 -11133048 + ID_B1 SINE B4 86 224 0 2 1425 259 293 0 0 chr12 110124485 110124560 -11132970 + HAL1 LINE L1 1552 1626 -881 2 1425 475 286 116 0 chr12 110124927 110125074 -11132456 + MTEa LTR MaLR 1 164 -215 2 1425 327 290 18 27 chr12 110125083 110125193 -11132337 + MTEa LTR MaLR 271 379 0 2 1425 437 296 50 10 chr12 110125385 110125586 -11131944 + HAL1 LINE L1 2012 2220 -287 2 1425 790 265 136 10 chr12 110125886 110126188 -11131342 + MTEb LTR MaLR 40 379 0 2 1425 209 150 16 48 chr12 110126210 110126273 -11131257 + A-rich Low_complexity Low_complexity 5 65 0 2 1425 252 0 0 0 chr12 110126281 110126309 -11131221 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 2 1425 376 330 29 0 chr12 110126375 110126478 -11131052 + MER2 DNA MER2_type 232 337 -8 2 1425 853 312 95 60 chr12 110127834 110128372 -11129158 - RMER15 LTR ERVL -3 572 16 2 1425 258 272 175 0 chr12 110129222 110129336 -11128194 + B1F SINE Alu 1 134 -15 2 1425 441 36 0 0 chr12 110129941 110129996 -11127534 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1425 263 301 0 14 chr12 110130926 110131000 -11126530 - ID4_ SINE ID -9 74 2 2 1425 213 132 0 0 chr12 110131469 110131507 -11126023 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1425 222 298 18 80 chr12 110131903 110132016 -11125514 + MIRm SINE MIR 46 151 -125 2 1425 364 379 23 8 chr12 110133972 110134017 -11123513 + ID_B1 SINE B4 43 177 -47 2 1425 452 216 68 0 chr12 110134017 110134105 -11123425 + B1F1 SINE Alu 6 99 -50 2 1425 378 260 85 23 chr12 110134114 110134244 -11123286 + B4A SINE B4 2 139 -153 2 1425 950 125 14 7 chr12 110134774 110134919 -11122611 - B1_Mus2 SINE Alu -1 146 1 2 1425 524 221 9 9 chr12 110134926 110135040 -11122490 - PB1D10 SINE Alu -1 116 3 2 1425 803 190 0 0 chr12 110135204 110135341 -11122189 + B1_Mur4 SINE Alu 1 137 -13 2 1425 405 0 0 0 chr12 110135343 110135388 -11122142 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1425 22 35 0 0 chr12 110135444 110135473 -11122057 + AT_rich Low_complexity Low_complexity 1 29 0 2 1425 216 0 0 0 chr12 110135526 110135550 -11121980 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1425 436 302 64 14 chr12 110135578 110135719 -11121811 - RSINE1 SINE B4 -15 150 3 2 1425 465 299 127 12 chr12 110135786 110135952 -11121578 - B3A SINE B2 -13 185 1 2 1425 773 155 93 0 chr12 110137239 110137368 -11120162 - B1_Mur4 SINE Alu -8 142 2 2 1425 503 31 15 0 chr12 110137577 110137642 -11119888 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1425 252 0 0 0 chr12 110137712 110137740 -11119790 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1425 754 186 0 44 chr12 110137743 110137878 -11119652 - B1_Mur1 SINE Alu -14 135 7 2 1425 658 261 73 114 chr12 110138217 110138300 -11119230 + B4 SINE B4 3 98 -194 2 1425 866 132 21 29 chr12 110138300 110138440 -11119090 + B1_Mur3 SINE Alu 1 139 -10 2 1425 658 261 73 114 chr12 110138440 110138600 -11118930 + B4 SINE B4 99 236 -56 2 1425 834 154 431 0 chr12 110138600 110138894 -11118636 - MTC LTR MaLR 0 421 1 2 1425 399 173 71 0 chr12 110138918 110139021 -11118509 + B1_Mur4 SINE Alu 6 119 -31 2 1425 311 283 92 52 chr12 110139024 110139177 -11118353 + B3 SINE B2 58 216 0 2 1425 204 297 0 75 chr12 110139617 110139697 -11117833 + L2c LINE L2 3057 3130 -257 2 1425 284 263 94 10 chr12 110140456 110140552 -11116978 - BC1_Mm scRNA scRNA -48 104 1 2 1425 315 192 0 0 chr12 110140562 110140640 -11116890 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1425 789 261 192 25 chr12 110140640 110140880 -11116650 - B4 SINE B4 0 292 13 2 1425 499 264 105 33 chr12 110140914 110141067 -11116463 - RSINE1 SINE B4 0 165 2 2 1425 597 275 7 7 chr12 110141072 110141215 -11116315 - B1_Mur2 SINE Alu -2 147 5 2 1425 186 408 0 40 chr12 110142081 110142155 -11115375 + L2c LINE L2 3277 3347 -40 2 1425 300 244 12 12 chr12 110143215 110143298 -11114232 + ID4_ SINE ID 1 83 0 2 1425 216 370 14 0 chr12 110145904 110145977 -11111553 + PB1 SINE Alu 1 74 -53 2 1425 351 0 0 0 chr12 110146023 110146062 -11111468 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1425 531 0 0 0 chr12 110146106 110146165 -11111365 + (GGAGA)n Simple_repeat Simple_repeat 3 61 0 2 1425 567 257 27 14 chr12 110146207 110146353 -11111177 - B1F SINE Alu -1 148 1 2 1425 288 0 0 0 chr12 110146571 110146603 -11110927 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1425 253 244 22 44 chr12 110146916 110147006 -11110524 + MIR SINE MIR 172 259 -3 2 1425 1639 263 70 11 chr12 110148005 110148474 -11109056 + Charlie1b DNA MER1_type 18 514 -9 2 1425 748 303 48 7 chr12 110148844 110149117 -11108413 - L1M5 LINE L1 -301 5823 5540 2 1425 279 250 225 0 chr12 110149963 110150083 -11107447 + MIRc SINE MIR 115 261 -7 2 1425 189 306 106 0 chr12 110151343 110151428 -11106102 + L2a LINE L2 3327 3420 -6 2 1425 204 228 35 114 chr12 110151690 110151804 -11105726 - L4 LINE RTE -1 2028 1924 2 1425 248 308 28 84 chr12 110153358 110153500 -11104030 - L1MD3 LINE L1 -135 7860 7727 2 1425 944 145 0 11 chr12 110153769 110153943 -11103587 + CT-rich Low_complexity Low_complexity 3 174 0 2 1425 180 0 0 0 chr12 110156959 110156979 -11100551 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1425 255 280 52 26 chr12 110157677 110157754 -11099776 - B4A SINE B4 -87 205 127 2 1425 2160 83 17 33 chr12 110157750 110158118 -11099412 - RLTR10A LTR ERVK -12 347 1 2 1425 519 243 28 0 chr12 110158121 110158228 -11099302 - B4A SINE B4 -144 148 39 2 1425 2712 142 7 7 chr12 110158230 110158648 -11098882 + MTC LTR MaLR 1 418 -3 2 1425 7429 82 12 0 chr12 110158805 110160115 -11097415 - L1_Mus4 LINE L1 -2 6634 5309 2 1425 535 261 9 9 chr12 110160212 110160328 -11097202 - RSINE1 SINE B4 -36 129 14 2 1425 892 169 0 20 chr12 110160345 110160496 -11097034 - B1_Mur2 SINE Alu 0 149 2 2 1425 345 125 0 0 chr12 110160557 110160613 -11096917 + (TATG)n Simple_repeat Simple_repeat 1 56 0 2 1425 425 216 111 3 chr12 110160615 110160716 -11096814 - B3 SINE B2 -89 127 18 2 1425 1636 142 11 84 chr12 110164091 110164438 -11093092 - RLTRETN_Mm LTR ERVK 0 322 1 2 1425 180 0 0 0 chr12 110164998 110165018 -11092512 + (C)n Simple_repeat Simple_repeat 1 20 0 2 1425 273 272 74 0 chr12 110167051 110167132 -11090398 - MER119 DNA MER1_type -305 278 192 2 1425 241 298 47 19 chr12 110167666 110167772 -11089758 - L1ME1 LINE L1 -6 6173 6065 2 1425 221 222 16 0 chr12 110167896 110167959 -11089571 + CT-rich Low_complexity Low_complexity 2 65 0 2 1425 312 283 33 86 chr12 110167986 110168137 -11089393 - B1F SINE Alu -2 147 5 2 1425 456 233 104 52 chr12 110168348 110168502 -11089028 - RSINE1 SINE B4 -1 164 3 2 1425 574 296 84 9 chr12 110168506 110168721 -11088809 - L1ME1 LINE L1 -342 5822 5592 2 1425 276 250 33 22 chr12 110168912 110169002 -11088528 + LTR40a LTR ERVL 49 139 -380 2 1425 225 295 34 43 chr12 110169184 110169301 -11088229 + LTR40a LTR ERVL 404 519 0 2 1425 186 43 0 0 chr12 110170422 110170445 -11087085 + (C)n Simple_repeat Simple_repeat 1 23 0 2 1425 21 0 0 0 chr12 110172074 110172095 -11085435 + AT_rich Low_complexity Low_complexity 1 21 0 2 1425 940 120 28 0 chr12 110173072 110173214 -11084316 - B1_Mur4 SINE Alu -4 146 1 2 1425 23 0 0 0 chr12 110173224 110173247 -11084283 + AT_rich Low_complexity Low_complexity 1 23 0 2 1425 965 108 0 0 chr12 110173262 110173401 -11084129 + B1_Mus1 SINE Alu 10 148 0 2 1425 207 0 0 0 chr12 110173413 110173436 -11084094 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1425 1067 63 28 0 chr12 110173460 110173603 -11083927 + B1_Mus2 SINE Alu 1 147 0 2 1425 900 9 17 8 chr12 110173614 110173732 -11083798 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 2 1425 594 270 40 0 chr12 110173735 110173887 -11083643 - RSINE1 SINE B4 -4 161 4 2 1425 220 303 0 29 chr12 110173989 110174057 -11083473 + (CCTA)n Simple_repeat Simple_repeat 2 67 0 2 1425 514 214 253 0 chr12 110174083 110174237 -11083293 - B3A SINE B2 -1 197 5 2 1425 408 332 80 58 chr12 110174368 110174592 -11082938 - MLT1G1 LTR MaLR 0 579 351 3 1425 309 333 23 16 chr12 110174707 110174835 -11082695 - MLT1G1 LTR MaLR -434 135 7 3 1425 342 0 0 0 chr12 110175587 110175625 -11081905 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1425 702 300 27 19 chr12 110175633 110175891 -11081639 - B4A SINE B4 -31 261 2 3 1425 485 194 10 10 chr12 110176751 110176850 -11080680 - B1_Mur4 SINE Alu -5 145 47 3 1425 303 210 32 0 chr12 110179114 110179176 -11078354 - B1_Mur1 SINE Alu -13 136 73 3 1425 381 319 35 7 chr12 110179213 110179355 -11078175 - ID_B1 SINE B4 -4 220 75 3 1425 737 282 67 24 chr12 110180717 110181015 -11076515 - Kanga2_a DNA Tc2 -157 731 421 3 1425 231 306 66 151 chr12 110181458 110181762 -11075768 - MLT1B LTR MaLR -80 310 33 3 1425 371 281 0 0 chr12 110182138 110182220 -11075310 + B1F SINE Alu 58 139 -10 3 1425 247 279 38 0 chr12 110182224 110182303 -11075227 + ID4_ SINE ID 2 83 0 3 1425 386 304 98 34 chr12 110183868 110184103 -11073427 - L1MC4 LINE L1 -8 8034 7785 3 1425 303 161 0 0 chr12 110184178 110184234 -11073296 + CT-rich Low_complexity Low_complexity 1 56 0 3 1425 317 301 197 38 chr12 110184234 110184298 -11073232 - ID_B1 SINE B4 -3 221 163 3 1425 2037 151 88 3 chr12 110184298 110184684 -11072846 - MTC LTR MaLR -2 419 1 3 1425 317 301 197 38 chr12 110184684 110184802 -11072728 - ID_B1 SINE B4 -62 162 10 3 1425 598 302 202 16 chr12 110185087 110185602 -11071928 - L1MC4 LINE L1 -756 7286 6676 3 1425 453 264 151 44 chr12 110185946 110186263 -11071267 - L1MC4 LINE L1 -1743 6139 5789 3 1425 6772 130 28 8 chr12 110186627 110187741 -11069789 - Lx2B LINE L1 0 7000 5865 3 1425 324 175 0 0 chr12 110187856 110187919 -11069611 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1425 180 0 0 0 chr12 110188977 110188997 -11068533 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1425 555 176 29 44 chr12 110189006 110189143 -11068387 - Lx4B LINE L1 -3 7055 6921 3 1425 438 53 0 0 chr12 110190622 110190679 -11066851 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1425 270 28 0 0 chr12 110190681 110190717 -11066813 - PB1D9 SINE Alu -57 63 28 3 1425 429 322 28 28 chr12 110190791 110190970 -11066560 - MIR SINE MIR -54 208 30 3 1425 288 130 0 0 chr12 110193261 110193307 -11064223 + (CCCCCT)n Simple_repeat Simple_repeat 6 51 0 3 1425 440 216 48 19 chr12 110193326 110193424 -11064106 + PB1D9 SINE Alu 6 107 -13 3 1425 252 0 0 0 chr12 110193424 110193452 -11064078 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1425 230 186 17 0 chr12 110193473 110193532 -11063998 + (CAA)n Simple_repeat Simple_repeat 1 60 0 3 1425 232 270 48 73 chr12 110193661 110193785 -11063745 - L1MA4 LINE L1 -361 5939 5819 3 1425 704 213 0 0 chr12 110193800 110193922 -11063608 - B1_Mus2 SINE Alu -12 135 14 3 1425 262 301 120 52 chr12 110194025 110194254 -11063276 - B4 SINE B4 -18 274 60 3 1425 665 297 86 21 chr12 110194284 110194669 -11062861 - L1_Rod LINE L1 -140 5707 5298 3 1425 1219 316 127 17 chr12 110194659 110195838 -11061692 - L1MA4 LINE L1 -1780 4360 3046 3 1425 207 317 0 89 chr12 110196476 110196566 -11060964 - MIRm SINE MIR 0 276 195 3 1425 377 0 96 0 chr12 110198041 110198114 -11059416 + (CCCTG)n Simple_repeat Simple_repeat 4 83 0 3 1425 35 0 0 0 chr12 110199361 110199396 -11058134 + AT_rich Low_complexity Low_complexity 1 35 0 3 1425 524 281 60 45 chr12 110199921 110200055 -11057475 + RSINE1 SINE B4 27 162 -3 3 1425 321 124 0 63 chr12 110202192 110202287 -11055243 + (TCTCTG)n Simple_repeat Simple_repeat 6 94 0 3 1425 324 315 132 66 chr12 110203579 110204123 -11053407 + L1MEf LINE L1 323 902 -5234 3 1425 190 162 0 72 chr12 110204507 110204700 -11052830 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 1425 242 157 0 73 chr12 110204717 110204813 -11052717 + (TG)n Simple_repeat Simple_repeat 1 89 0 3 1425 422 159 5 74 chr12 110204828 110205078 -11052452 + (TG)n Simple_repeat Simple_repeat 1 232 0 3 1425 216 0 0 0 chr12 110205111 110205135 -11052395 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1425 412 281 142 0 chr12 110205439 110205720 -11051810 + L1MEf LINE L1 1887 2207 -4035 3 1425 760 217 133 21 chr12 110205724 110205912 -11051618 + B3 SINE B2 3 211 -5 3 1425 239 229 33 0 chr12 110206170 110206231 -11051299 + L1MEf LINE L1 2507 2569 -3577 3 1425 707 206 12 61 chr12 110206509 110206674 -11050856 - RSINE1 SINE B4 0 165 9 3 1425 379 308 35 0 chr12 110206969 110207112 -11050418 + L1MEc LINE L1 710 857 -5543 3 1425 525 143 214 0 chr12 110207234 110207346 -11050184 + RSINE1 SINE B4 7 142 -23 3 1425 354 245 0 152 chr12 110207554 110207679 -11049851 - PB1D10 SINE Alu -11 106 1 3 1425 4004 216 40 51 chr12 110207704 110208035 -11049495 - RMER1C Other Other 0 1342 985 3 1425 207 0 0 0 chr12 110208035 110208058 -11049472 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 3 1425 4004 216 40 51 chr12 110208058 110208668 -11048862 - RMER1C Other Other -358 984 411 3 1425 261 0 0 0 chr12 110208685 110208714 -11048816 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1425 391 213 27 0 chr12 110208714 110208789 -11048741 + B1_Mur2 SINE Alu 35 111 -38 3 1425 225 0 0 0 chr12 110208828 110208853 -11048677 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 1425 201 138 0 0 chr12 110208853 110208882 -11048648 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 3 1425 284 267 254 33 chr12 110208927 110209140 -11048390 - B4A SINE B4 -29 263 4 3 1425 915 228 14 23 chr12 110209293 110209509 -11048021 + B3 SINE B2 2 215 -1 3 1425 727 266 153 33 chr12 110209539 110209873 -11047657 - RMER5 LTR ERV1 -9 525 152 3 1425 910 326 42 50 chr12 110210472 110211217 -11046313 + L1MEc LINE L1 2316 3054 -3265 3 1425 463 266 76 7 chr12 110211603 110211747 -11045783 - RSINE1 SINE B4 -9 156 3 3 1425 354 260 10 20 chr12 110211766 110211864 -11045666 - PB1D7 SINE Alu -23 97 1 3 1425 742 298 64 3 chr12 110211868 110212195 -11045335 + L1M5 LINE L1 3220 3566 -2580 3 1425 282 306 12 0 chr12 110212245 110212330 -11045200 + MLT1B LTR MaLR 21 106 -284 3 1425 227 167 53 53 chr12 110212468 110212525 -11045005 + MLT1C LTR MaLR 406 462 -5 3 1425 3688 179 100 55 chr12 110212646 110213507 -11044023 - RMER19B LTR ERVK -2 900 1 3 1425 231 310 98 20 chr12 110213507 110213609 -11043921 + L1M5 LINE L1 3741 3850 -2296 3 1425 330 316 96 9 chr12 110213764 110213879 -11043651 + RSINE1 SINE B4 1 125 -40 3 1425 212 316 0 50 chr12 110214113 110214173 -11043357 + ID4_ SINE ID 3 59 -24 3 1425 189 0 0 0 chr12 110214178 110214199 -11043331 + (C)n Simple_repeat Simple_repeat 1 21 0 3 1425 261 323 185 25 chr12 110214209 110214495 -11043035 + L1MEc LINE L1 4219 4550 -1769 3 1425 510 261 28 7 chr12 110215096 110215239 -11042291 + RSINE1 SINE B4 1 146 -19 3 1425 594 180 85 8 chr12 110216785 110216914 -11040616 + B1_Mur3 SINE Alu 11 149 0 3 1425 207 0 0 0 chr12 110217204 110217227 -11040303 + (GCCTG)n Simple_repeat Simple_repeat 1 23 0 3 1425 555 303 35 15 chr12 110217393 110217594 -11039936 - L1M3 LINE L1 -529 5654 5450 3 1425 195 336 89 18 chr12 110218250 110218362 -11039168 - MIR SINE MIR -68 194 75 3 1425 760 86 0 0 chr12 110221278 110221383 -11036147 - B2_Mm2 SINE B2 -90 105 1 3 1425 747 230 136 45 chr12 110225199 110225463 -11032067 + B4A SINE B4 5 292 0 3 1425 1756 279 125 98 chr12 110225687 110226058 -11031472 + RCHARR1 DNA MER1_type 5 466 -508 3 1425 1217 74 0 0 chr12 110226058 110226206 -11031324 - B1_Mus1 SINE Alu 0 148 1 3 1425 1756 279 125 98 chr12 110226206 110226771 -11030759 + RCHARR1 DNA MER1_type 467 965 -9 3 1425 613 291 30 6 chr12 110226799 110226862 -11030668 - B4A SINE B4 -96 196 133 3 1425 234 0 0 0 chr12 110226862 110226888 -11030642 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1425 613 291 30 6 chr12 110226888 110226990 -11030540 - B4A SINE B4 -160 132 28 3 1425 1121 118 0 6 chr12 110227090 110227269 -11030261 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 3 1425 295 317 12 0 chr12 110227435 110227517 -11030013 + ID4_ SINE ID 1 83 0 3 1425 259 320 47 31 chr12 110227576 110227705 -11029825 + Charlie7 DNA MER1_type 1940 2070 -542 3 1425 388 266 119 0 chr12 110227917 110228026 -11029504 + RSINE1 SINE B4 3 124 -41 3 1425 199 0 65 0 chr12 110228064 110228095 -11029435 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1425 1191 36 0 0 chr12 110228095 110228232 -11029298 - B1_Mus2 SINE Alu -9 138 2 3 1425 189 139 0 0 chr12 110228343 110228386 -11029144 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1425 371 276 182 13 chr12 110228400 110228554 -11028976 + B3A SINE B2 1 180 -18 3 1425 384 235 108 78 chr12 110229004 110229133 -11028397 - B4 SINE B4 -77 215 83 3 1425 356 194 15 0 chr12 110229894 110229961 -11027569 - B4 SINE B4 -206 86 19 3 1425 191 258 268 0 chr12 110230701 110230798 -11026732 + MIRb SINE MIR 82 204 -64 3 1425 387 56 0 0 chr12 110231188 110231242 -11026288 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1425 671 300 72 12 chr12 110231260 110231510 -11026020 - B4 SINE B4 -23 269 5 3 1426 985 144 0 0 chr12 110232487 110232633 -11024897 + B1_Mus2 SINE Alu 2 147 0 3 1426 191 114 0 28 chr12 110233424 110233460 -11024070 + (CTG)n Simple_repeat Simple_repeat 1 35 0 3 1426 473 266 77 15 chr12 110233608 110233738 -11023792 + MER58A DNA MER1_type 44 181 -43 3 1426 240 319 42 0 chr12 110236137 110236209 -11021321 + L2a LINE L2 3322 3396 -30 3 1426 404 265 9 33 chr12 110237868 110237985 -11019545 - PB1D7 SINE Alu 0 120 8 3 1426 300 266 72 79 chr12 110238202 110238341 -11019189 - PB1D10 SINE Alu -11 138 1 3 1426 301 292 63 9 chr12 110238341 110238400 -11019130 - ID_B1 SINE B4 -134 90 27 3 1426 306 148 0 0 chr12 110238535 110238589 -11018941 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1426 579 275 113 92 chr12 110238594 110238878 -11018652 - B4A SINE B4 -1 291 2 3 1426 1706 199 70 26 chr12 110238898 110239326 -11018204 - RCHARR1 DNA MER1_type -3 971 525 3 1426 258 32 0 0 chr12 110239326 110239357 -11018173 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1426 279 79 0 0 chr12 110239425 110239463 -11018067 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 3 1426 805 262 94 15 chr12 110239474 110239531 -11017999 - B4A SINE B4 0 292 216 3 1426 549 44 0 0 chr12 110239531 110239599 -11017931 + (TCCC)n Simple_repeat Simple_repeat 4 71 0 3 1426 920 245 6 14 chr12 110239599 110239808 -11017722 - B4 SINE B4 -77 215 5 3 1426 1137 299 95 18 chr12 110239816 110240268 -11017262 - RCHARR1 DNA MER1_type -441 533 47 3 1426 437 172 11 0 chr12 110240419 110240512 -11017018 + CT-rich Low_complexity Low_complexity 3 96 0 3 1426 909 0 15 111 chr12 110240514 110240712 -11016818 + (TTTCC)n Simple_repeat Simple_repeat 1 179 0 3 1426 1063 79 0 43 chr12 110240726 110240912 -11016618 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 1426 593 172 155 0 chr12 110240912 110241028 -11016502 - B1_Mur1 SINE Alu -14 135 2 3 1426 428 116 0 11 chr12 110241117 110241204 -11016326 + (TC)n Simple_repeat Simple_repeat 1 86 0 4 1426 342 0 0 0 chr12 110241205 110241243 -11016287 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1426 233 276 26 71 chr12 110241389 110241502 -11016028 - B4A SINE B4 -116 176 69 4 1426 454 307 166 26 chr12 110241549 110242105 -11015425 - L1MCa LINE L1 -5319 1432 486 4 1426 505 299 95 1 chr12 110242972 110243308 -11014222 - L1M5 LINE L1 -2991 3155 2770 4 1426 285 258 0 58 chr12 110243644 110243706 -11013824 + polypurine Low_complexity Low_complexity 3 62 0 4 1426 901 101 14 0 chr12 110243706 110243854 -11013676 + (GGGA)n Simple_repeat Simple_repeat 3 152 0 4 1426 285 258 0 58 chr12 110243854 110243894 -11013636 + polypurine Low_complexity Low_complexity 63 99 0 4 1426 240 239 27 27 chr12 110244749 110244822 -11012708 + MER91A DNA Tip100 19 91 -105 4 1426 287 339 51 0 chr12 110246841 110246959 -11010571 + MIRb SINE MIR 84 207 -61 4 1426 309 109 0 0 chr12 110248101 110248147 -11009383 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1426 764 189 137 32 chr12 110249105 110249389 -11008141 - L1MC5 LINE L1 -159 7802 7489 4 1426 586 334 202 3 chr12 110249635 110249992 -11007538 + Tigger7 DNA MER2_type 37 464 -2027 4 1426 1994 183 15 72 chr12 110249998 110250399 -11007131 - ORR1C1 LTR MaLR 0 378 1 4 1426 585 187 29 43 chr12 110250672 110250812 -11006718 - B1_Mur2 SINE Alu 0 149 12 4 1426 238 339 126 0 chr12 110250932 110251059 -11006471 - L1M5 LINE L1 -2322 3824 3682 4 1426 1050 103 11 54 chr12 110251176 110251360 -11006170 - L1_Mus3 LINE L1 0 6638 6463 4 1426 268 261 43 17 chr12 110251436 110251553 -11005977 + (TATAA)n Simple_repeat Simple_repeat 4 123 0 4 1426 510 256 50 0 chr12 110251960 110252081 -11005449 - B1F2 SINE Alu -17 132 6 4 1426 24 0 0 0 chr12 110252216 110252240 -11005290 + AT_rich Low_complexity Low_complexity 1 24 0 4 1426 1139 69 0 14 chr12 110252240 110252387 -11005143 - B1_Mus2 SINE Alu 0 147 3 4 1426 726 75 0 0 chr12 110252387 110252480 -11005050 - 4.5SRNA scRNA scRNA -1 93 1 4 1426 545 314 98 76 chr12 110252913 110253466 -11004064 - L1M4 LINE L1 -1716 4430 3886 4 1426 207 0 0 0 chr12 110253466 110253489 -11004041 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1426 545 310 101 76 chr12 110253489 110253599 -11003931 - L1M4 LINE L1 -2259 3887 3772 4 1426 738 298 63 17 chr12 110254027 110254501 -11003029 - L1M4 LINE L1 -2932 3214 2719 4 1426 1090 265 89 15 chr12 110254679 110255005 -11002525 - ORR1E LTR MaLR -6 353 4 4 1426 423 269 12 94 chr12 110255037 110255197 -11002333 + RSINE1 SINE B4 3 149 -16 4 1426 509 304 119 19 chr12 110255235 110255503 -11002027 + MLT1A1 LTR MaLR 72 366 -42 4 1426 1033 226 31 80 chr12 110255642 110256040 -11001490 + RMER5 LTR ERV1 3 449 -85 4 1426 533 284 60 13 chr12 110256089 110256239 -11001291 - RSINE1 SINE B4 -8 157 1 4 1426 321 293 45 0 chr12 110257165 110257298 -11000232 - L1MDa LINE L1 -3805 2732 2594 4 1426 238 315 84 0 chr12 110257453 110257596 -10999934 - L1MDa LINE L1 -4063 2570 2416 4 1426 443 226 49 0 chr12 110258238 110258340 -10999190 - B1_Mus1 SINE Alu -2 146 40 4 1426 189 74 0 0 chr12 110258549 110258576 -10998954 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 1426 23 0 0 0 chr12 110258792 110258815 -10998715 + AT_rich Low_complexity Low_complexity 1 23 0 4 1426 347 319 11 0 chr12 110258832 110258923 -10998607 + MER58C DNA MER1_type 2 93 -122 4 1426 296 24 24 0 chr12 110258971 110259012 -10998518 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1426 347 233 75 144 chr12 110259102 110259129 -10998401 - B2_Mm1t SINE B2 -6 187 163 4 1426 437 76 15 0 chr12 110259129 110259195 -10998335 + (TATG)n Simple_repeat Simple_repeat 1 67 0 4 1426 556 233 75 144 chr12 110259195 110259368 -10998162 - B3 SINE B2 -53 163 1 4 1426 305 258 11 43 chr12 110259500 110259593 -10997937 - PB1D10 SINE Alu -17 100 11 4 1426 325 256 11 22 chr12 110259510 110259602 -10997928 - ID_B1 SINE B4 -51 173 83 4 1426 596 179 0 0 chr12 110262517 110262623 -10994907 + B1_Mur4 SINE Alu 2 107 -43 4 1426 340 303 89 38 chr12 110263654 110263812 -10993718 + HAL1-2a_MD LINE L1 2354 2519 -505 4 1426 359 248 22 42 chr12 110263819 110264236 -10993294 + (CACCAT)n Simple_repeat Simple_repeat 1 408 0 4 1426 978 80 0 0 chr12 110264264 110264401 -10993129 + (CA)n Simple_repeat Simple_repeat 2 138 0 4 1426 229 241 70 35 chr12 110265172 110265258 -10992272 + RMER30 DNA MER1_type 100 188 -14 4 1426 885 120 90 0 chr12 110265907 110266040 -10991490 - B1_Mus2 SINE Alu 0 147 3 4 1426 1683 147 37 31 chr12 110266392 110266715 -10990815 + ORR1C2 LTR MaLR 60 384 0 4 1426 219 139 0 0 chr12 110266848 110266884 -10990646 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 4 1426 181 378 81 10 chr12 110267482 110267581 -10989949 + MIRb SINE MIR 33 138 -130 4 1426 219 125 0 0 chr12 110271607 110271647 -10985883 + (CCG)n Simple_repeat Simple_repeat 1 40 0 4 1426 204 40 0 0 chr12 110272660 110272685 -10984845 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1426 207 0 0 0 chr12 110275539 110275562 -10981968 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1426 200 289 181 17 chr12 110276386 110276502 -10981028 - MIRb SINE MIR -106 162 28 4 1426 295 304 79 18 chr12 110282049 110282213 -10975317 + L2c LINE L2 2974 3147 -240 4 1426 970 226 33 9 chr12 110285574 110285784 -10971746 - B3 SINE B2 0 216 2 4 1426 303 266 38 0 chr12 110285982 110286061 -10971469 - MIR SINE MIR -147 115 34 4 1426 186 43 0 0 chr12 110287920 110287943 -10969587 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 4 1426 218 184 80 20 chr12 110289333 110289383 -10968147 - MIR SINE MIR -64 144 92 4 1426 271 172 31 87 chr12 110290905 110291032 -10966498 + (CCCCG)n Simple_repeat Simple_repeat 4 123 0 4 1426 23 54 0 0 chr12 110291337 110291374 -10966156 + GC_rich Low_complexity Low_complexity 1 37 0 4 1426 25 99 0 0 chr12 110291923 110292004 -10965526 + GC_rich Low_complexity Low_complexity 1 81 0 4 1426 22 0 0 0 chr12 110293078 110293100 -10964430 + AT_rich Low_complexity Low_complexity 1 22 0 4 1426 612 38 0 0 chr12 110294611 110294690 -10962840 + (GGGA)n Simple_repeat Simple_repeat 2 80 0 4 1426 575 270 33 108 chr12 110295607 110295848 -10961682 + MER102b DNA MER1_type 9 231 -110 4 1426 241 239 123 27 chr12 110297971 110298044 -10959486 + B4A SINE B4 5 84 -208 4 1426 4474 206 53 15 chr12 110298052 110298946 -10958584 + Lx5 LINE L1 6050 6986 -64 4 1426 231 36 0 0 chr12 110298946 110298974 -10958556 + (GGGGA)n Simple_repeat Simple_repeat 2 29 0 4 1426 4474 206 53 15 chr12 110298974 110299027 -10958503 + Lx5 LINE L1 6987 7032 -18 4 1426 240 111 0 0 chr12 110299037 110299073 -10958457 + (TAA)n Simple_repeat Simple_repeat 1 36 0 4 1426 301 266 2 11 chr12 110299073 110299171 -10958359 + B4A SINE B4 89 183 -109 4 1426 470 361 54 68 chr12 110299339 110299690 -10957840 + MLT1J LTR MaLR 146 491 -21 4 1426 1377 123 1 1 chr12 110300603 110301257 -10956273 + (TGGA)n Simple_repeat Simple_repeat 1 654 0 4 1426 189 171 0 0 chr12 110301293 110301328 -10956202 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 4 1426 434 286 6 0 chr12 110301345 110301516 -10956014 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 4 1426 189 214 0 0 chr12 110301536 110301578 -10955952 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 4 1426 336 175 0 0 chr12 110301586 110301649 -10955881 + (TGAA)n Simple_repeat Simple_repeat 4 66 0 4 1426 198 287 0 0 chr12 110301708 110301795 -10955735 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 4 1426 204 291 63 0 chr12 110304403 110304482 -10953048 - MIR3 SINE MIR -116 92 9 4 1426 207 216 0 0 chr12 110304792 110304829 -10952701 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 4 1426 184 326 0 0 chr12 110304852 110304901 -10952629 + MIRb SINE MIR 211 259 -9 4 1426 755 48 10 0 chr12 110304930 110305034 -10952496 + (GA)n Simple_repeat Simple_repeat 1 105 0 4 1426 56 79 0 0 chr12 110306183 110306309 -10951221 + GC_rich Low_complexity Low_complexity 1 126 0 4 1426 48 120 0 0 chr12 110306201 110306501 -10951029 + GC_rich Low_complexity Low_complexity 1 300 0 4 1426 45 98 0 0 chr12 110306389 110306532 -10950998 + GC_rich Low_complexity Low_complexity 1 143 0 4 1426 268 260 88 44 chr12 110306681 110306796 -10950734 - L2b LINE L2 -13 3374 3254 4 1426 437 292 25 0 chr12 110307370 110307490 -10950040 - L1MB3 LINE L1 -8 6175 6053 4 1426 240 364 52 13 chr12 110308354 110308507 -10949023 - MIRb SINE MIR -76 192 34 4 1426 591 303 69 61 chr12 110310870 110311116 -10946414 + B4A SINE B4 1 248 -44 4 1426 597 154 0 0 chr12 110311116 110311259 -10946271 + GA-rich Low_complexity Low_complexity 1 143 0 4 1426 366 282 93 28 chr12 110311701 110311968 -10945562 - L1MA10 LINE L1 -9 6325 5894 4 1426 294 73 0 0 chr12 110311977 110312018 -10945512 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1426 454 249 115 20 chr12 110312031 110312233 -10945297 - B4 SINE B4 -21 271 16 4 1426 417 314 99 12 chr12 110312252 110312471 -10945059 - L1M4 LINE L1 -2393 3750 3510 4 1426 269 153 130 20 chr12 110312540 110312640 -10944890 - Lx9 LINE L1 -7 7637 7527 4 1426 273 317 28 35 chr12 110312727 110312871 -10944659 - L1M4 LINE L1 -2744 3402 3260 4 1426 996 109 0 0 chr12 110312872 110313047 -10944483 + (TC)n Simple_repeat Simple_repeat 1 175 0 4 1426 255 190 17 17 chr12 110313108 110313167 -10944363 + CT-rich Low_complexity Low_complexity 1 59 0 4 1426 303 28 0 0 chr12 110313396 110313432 -10944098 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1426 477 0 0 0 chr12 110313432 110313485 -10944045 + (CCA)n Simple_repeat Simple_repeat 1 53 0 4 1426 23 33 0 0 chr12 110313665 110313695 -10943835 + AT_rich Low_complexity Low_complexity 1 30 0 4 1426 391 254 113 48 chr12 110313695 110313881 -10943649 - Lx8 LINE L1 -2 7471 7274 4 1426 2619 302 70 31 chr12 110313876 110315758 -10941772 - Lx8 LINE L1 -445 7199 5246 4 1426 444 262 70 7 chr12 110315769 110315907 -10941623 + L1_Rod LINE L1 5634 5814 -69 4 1426 447 344 11 16 chr12 110315908 110316097 -10941433 - Lx8 LINE L1 -628 5219 5032 4 1426 3148 263 68 36 chr12 110316142 110317534 -10939996 - L1_Mur3 LINE L1 -2168 3712 2276 4 1426 507 252 58 25 chr12 110317569 110317809 -10939721 - L1_Rod LINE L1 -4085 1762 1515 4 1426 1463 163 87 15 chr12 110317846 110318245 -10939285 - RLTR20B2 LTR ERVK 0 563 138 4 1426 26 30 0 0 chr12 110318291 110318324 -10939206 + AT_rich Low_complexity Low_complexity 1 33 0 4 1426 753 221 130 50 chr12 110318328 110318528 -10939002 - B3 SINE B2 0 216 1 5 1426 294 354 6 0 chr12 110318542 110318700 -10938830 - L1_Rod LINE L1 -6288 884 726 5 1426 696 209 0 0 chr12 110318710 110318839 -10938691 - B1_Mur1 SINE Alu -6 143 15 5 1426 1094 90 14 0 chr12 110318841 110318985 -10938545 + B1_Mus2 SINE Alu 2 147 0 5 1426 552 46 36 27 chr12 110318987 110319098 -10938432 + (CAAAAA)n Simple_repeat Simple_repeat 2 113 0 5 1426 22 0 0 0 chr12 110319119 110319141 -10938389 + AT_rich Low_complexity Low_complexity 1 22 0 5 1426 469 329 14 7 chr12 110319345 110319483 -10938047 - RSINE1 SINE B4 -1 164 26 5 1426 813 165 81 76 chr12 110319487 110319697 -10937833 - ORR1D1 LTR MaLR 0 384 174 5 1426 573 171 12 6 chr12 110319697 110319868 -10937662 + GA-rich Low_complexity Low_complexity 1 172 0 5 1426 231 69 0 0 chr12 110319870 110319899 -10937631 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 5 1426 902 219 0 11 chr12 110319899 110320088 -10937442 - ORR1D1 LTR MaLR -187 187 1 5 1426 1645 118 4 22 chr12 110320210 110320478 -10937052 - MTC LTR MaLR 0 421 159 5 1426 180 245 0 0 chr12 110320710 110320763 -10936767 + CT-rich Low_complexity Low_complexity 3 55 0 5 1426 248 264 211 42 chr12 110320777 110320872 -10936658 - PB1D7 SINE Alu 0 120 10 5 1426 454 163 10 10 chr12 110320879 110320978 -10936552 + CT-rich Low_complexity Low_complexity 3 101 0 5 1426 990 130 6 11 chr12 110320978 110321157 -10936373 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 5 1426 200 176 0 0 chr12 110321263 110321297 -10936233 + C-rich Low_complexity Low_complexity 1 34 0 5 1426 894 134 8 0 chr12 110321464 110321598 -10935932 - B1_Mus1 SINE Alu -11 137 3 5 1426 314 279 83 75 chr12 110321696 110321816 -10935714 - RSINE1 SINE B4 -2 163 43 5 1426 1528 174 59 62 chr12 110321809 110322183 -10935347 + ORR1C1 LTR MaLR 6 378 0 5 1426 304 257 19 19 chr12 110322405 110322512 -10935018 - L1MEc LINE L1 -5550 850 744 5 1426 627 51 0 0 chr12 110322512 110322591 -10934939 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 5 1426 1241 258 114 6 chr12 110322909 110323241 -10934289 - ORR1D2 LTR MaLR 0 370 3 5 1426 2684 256 147 15 chr12 110324365 110325322 -10932208 - Lx8 LINE L1 -2 7471 6471 5 1426 420 265 7 57 chr12 110325337 110325477 -10932053 - MTD LTR MaLR -19 400 268 5 1426 273 310 29 29 chr12 110325544 110325647 -10931883 - MTD LTR MaLR -162 259 157 5 1426 2239 285 110 14 chr12 110325647 110326002 -10931528 + L1_Mur3 LINE L1 4851 5250 -630 5 1426 288 0 0 0 chr12 110326002 110326034 -10931496 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1426 2239 285 110 14 chr12 110326034 110326531 -10930999 + L1_Mur3 LINE L1 5251 5784 -96 5 1426 745 276 15 5 chr12 110326538 110326738 -10930792 + Lx8 LINE L1 6510 6711 -762 5 1426 865 257 111 11 chr12 110326747 110326856 -10930674 + Lx8 LINE L1 6841 6950 -523 5 1426 189 0 0 0 chr12 110326856 110326877 -10930653 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1426 865 257 111 11 chr12 110326877 110327046 -10930484 + Lx8 LINE L1 6951 7147 -326 5 1426 409 227 31 10 chr12 110327142 110327240 -10930290 - URR1B DNA MER1_type -125 100 1 5 1426 2697 303 82 15 chr12 110327376 110328395 -10929135 - Lx8 LINE L1 -29 7444 6358 5 1426 252 277 61 50 chr12 110328523 110328622 -10928908 + MER58B DNA MER1_type 222 321 -20 5 1426 252 0 0 0 chr12 110329158 110329186 -10928344 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1426 1134 179 13 35 chr12 110329515 110329746 -10927784 - URR1A DNA MER1_type 0 226 1 5 1426 876 310 89 53 chr12 110331603 110331699 -10925831 - Charlie12 DNA MER1_type 0 2873 2776 5 1426 615 245 6 70 chr12 110331699 110331857 -10925673 + B1_Mur2 SINE Alu 2 149 0 5 1426 876 310 89 53 chr12 110331857 110332176 -10925354 - Charlie12 DNA MER1_type -98 2775 2443 5 1426 2063 291 82 74 chr12 110332496 110333296 -10924234 - Charlie12 DNA MER1_type -430 2443 1630 5 1426 791 253 49 98 chr12 110333296 110333603 -10923927 - B4A SINE B4 0 292 1 5 1426 2063 291 82 74 chr12 110333603 110333628 -10923902 - Charlie12 DNA MER1_type -1244 1629 1614 5 1426 600 93 0 0 chr12 110333628 110333725 -10923805 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 1426 2063 291 82 74 chr12 110333725 110333944 -10923586 - Charlie12 DNA MER1_type -1260 1613 1389 5 1426 802 211 12 24 chr12 110333992 110334162 -10923368 + Lx8 LINE L1 6575 6742 -731 5 1426 283 268 126 31 chr12 110334165 110334292 -10923238 - Lx8 LINE L1 -444 7029 6891 5 1426 351 0 0 0 chr12 110334297 110334336 -10923194 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1426 1157 192 15 5 chr12 110334342 110334546 -10922984 + B3 SINE B2 5 210 -6 5 1426 2445 266 50 12 chr12 110334558 110335213 -10922317 - Lx8 LINE L1 -672 6801 6122 5 1426 1749 206 102 0 chr12 110335389 110335762 -10921768 - MTD LTR MaLR -8 411 1 5 1426 213 121 0 0 chr12 110335911 110335944 -10921586 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1426 353 188 0 0 chr12 110335982 110336051 -10921479 - Lx8 LINE L1 -58 5789 5721 5 1426 1894 152 65 24 chr12 110336052 110336389 -10921141 + ORR1B1 LTR MaLR 36 386 -8 5 1426 510 261 182 38 chr12 110336916 110337360 -10920170 - L1_Rod LINE L1 -3218 2629 2083 5 1426 257 291 81 7 chr12 110337497 110337646 -10919884 - L1_Rod LINE L1 -6266 1342 1183 5 1426 1382 296 50 150 chr12 110338559 110339472 -10918058 - Charlie12 DNA MER1_type -1611 1262 441 5 1426 632 342 79 18 chr12 110339550 110339864 -10917666 + Lx8 LINE L1 7000 7341 -132 5 1426 666 0 0 0 chr12 110339864 110339938 -10917592 + (GAA)n Simple_repeat Simple_repeat 2 75 0 5 1426 632 342 79 18 chr12 110339938 110340066 -10917464 + Lx8 LINE L1 7342 7468 -5 5 1426 541 231 0 18 chr12 110340216 110340326 -10917204 + RMER30 DNA MER1_type 87 194 -8 5 1426 234 36 0 0 chr12 110340467 110340495 -10917035 + RLTR13D1 LTR ERVK 1 28 -778 5 1426 262 292 31 0 chr12 110340552 110340617 -10916913 + ORR1E LTR MaLR 8 74 -285 5 1426 227 295 16 0 chr12 110341028 110341089 -10916441 + Lx8 LINE L1 6097 6158 -1315 5 1426 292 227 0 51 chr12 110341348 110341427 -10916103 + CT-rich Low_complexity Low_complexity 4 78 0 5 1426 2396 152 7 34 chr12 110341446 110341862 -10915668 - MTB_Mm LTR MaLR -2 405 1 5 1426 513 104 0 0 chr12 110341864 110341941 -10915589 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 5 1426 3375 275 88 26 chr12 110341943 110343036 -10914494 + Lx8 LINE L1 6189 7349 -124 5 1426 242 156 38 25 chr12 110343149 110343228 -10914302 + GA-rich Low_complexity Low_complexity 3 82 0 5 1426 328 322 34 110 chr12 110343229 110343269 -10914261 - MTEa LTR MaLR -159 220 2 5 1426 425 274 71 35 chr12 110343269 110343466 -10914064 - MLT2B3 LTR ERVL -349 205 2 5 1426 486 0 0 0 chr12 110343620 110343674 -10913856 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 5 1426 765 158 0 19 chr12 110343688 110343849 -10913681 + CT-rich Low_complexity Low_complexity 3 160 0 5 1426 855 197 7 0 chr12 110343855 110344002 -10913528 - B1_Mus1 SINE Alu 0 148 1 5 1426 342 0 0 0 chr12 110344123 110344161 -10913369 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1426 1434 177 69 112 chr12 110344183 110344559 -10912971 + ORR1D1 LTR MaLR 15 374 0 5 1426 1324 315 92 48 chr12 110344587 110344739 -10912791 - L1MA4 LINE L1 -368 5932 5710 5 1426 2559 74 6 0 chr12 110344739 110345064 -10912466 + ORR1A2 LTR MaLR 1 327 0 5 1426 1324 311 83 62 chr12 110345064 110346162 -10911368 - L1MA4 LINE L1 -171 5709 4609 5 1426 416 323 26 11 chr12 110346171 110346362 -10911168 + L1_Mur3 LINE L1 4379 4572 -1308 5 1426 3279 43 5 8 chr12 110346418 110346815 -10910715 - MTA_Mm LTR MaLR 0 396 1 5 1426 2132 207 72 55 chr12 110347022 110347621 -10909909 - RMER19B LTR ERVK -58 844 3 5 1426 578 302 107 0 chr12 110347780 110348088 -10909442 + L1MB2 LINE L1 5657 5997 -174 5 1426 2166 86 39 63 chr12 110349746 110350081 -10907449 + ORR1A2 LTR MaLR 1 327 0 5 1426 187 311 80 13 chr12 110350689 110350764 -10906766 - L2c LINE L2 -39 3348 3269 5 1426 482 0 17 0 chr12 110351985 110352043 -10905487 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 5 1426 2080 174 72 2 chr12 110352063 110352334 -10905196 + Lx2B LINE L1 6569 6865 -135 5 1426 402 21 0 0 chr12 110352334 110352381 -10905149 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1426 2080 174 72 2 chr12 110352381 110352513 -10905017 + Lx2B LINE L1 6866 6999 -1 5 1426 794 264 88 8 chr12 110353860 110354120 -10903410 - B4A SINE B4 -10 282 2 5 1426 6198 215 71 38 chr12 110354361 110355027 -10902503 - Lx7 LINE L1 -1 7695 7006 5 1426 741 171 20 54 chr12 110355027 110355175 -10902355 - B1_Mus2 SINE Alu 0 147 5 5 1426 6198 214 73 37 chr12 110355175 110356025 -10901505 - Lx7 LINE L1 -691 7005 6142 5 1426 599 276 17 78 chr12 110356258 110356490 -10901040 + RMER16 LTR ERVK 302 519 -14 5 1426 2087 220 66 83 chr12 110356828 110357208 -10900322 - Lx7 LINE L1 -1527 6169 5788 5 1426 847 207 0 0 chr12 110357208 110357353 -10900177 - B1_Mur4 SINE Alu -5 145 1 5 1426 2087 197 41 108 chr12 110357353 110357548 -10899982 - Lx7 LINE L1 -93 5787 5595 5 1426 906 143 15 0 chr12 110357548 110357681 -10899849 + B1_Mus1 SINE Alu 1 135 -13 5 1426 495 0 0 0 chr12 110357684 110357739 -10899791 + (CAA)n Simple_repeat Simple_repeat 2 56 0 5 1426 2087 197 41 108 chr12 110357739 110358020 -10899510 - Lx7 LINE L1 -286 5594 5325 5 1426 426 277 28 21 chr12 110358022 110358158 -10899372 + ORR1E-int LTR MaLR 1408 1544 -36 5 1426 298 315 51 29 chr12 110358158 110358329 -10899201 + ORR1E LTR MaLR 4 192 -167 5 1426 3627 35 33 0 chr12 110358350 110358772 -10898758 - RLTR10C LTR ERVK 0 436 1 5 1426 342 0 0 0 chr12 110358835 110358873 -10898657 + (TATG)n Simple_repeat Simple_repeat 1 38 0 5 1426 1260 209 137 65 chr12 110358956 110359359 -10898171 + RMER4B LTR ERVK 17 448 -137 5 1426 260 255 51 0 chr12 110359461 110359559 -10897971 - L1M2 LINE L1 -1009 5134 5032 5 1426 505 235 42 21 chr12 110359559 110359714 -10897816 - B1_Mur1 SINE Alu 0 149 3 5 1426 210 354 41 106 chr12 110359714 110359810 -10897720 - B4A SINE B4 -209 83 2 5 1426 493 342 26 6 chr12 110359826 110359982 -10897548 + RSINE1 SINE B4 2 160 -5 5 1426 261 83 0 0 chr12 110360035 110360071 -10897459 + (CAT)n Simple_repeat Simple_repeat 1 36 0 5 1426 1626 287 86 47 chr12 110360081 110360618 -10896912 - L1M2 LINE L1 -1291 4852 4315 5 1426 233 289 39 26 chr12 110360618 110360696 -10896834 - ID4 SINE ID -2 81 3 5 1426 1626 287 86 47 chr12 110360696 110361139 -10896391 - L1M2 LINE L1 -1829 4314 3834 5 1426 390 289 49 9 chr12 110361211 110361429 -10896101 + L1M3 LINE L1 5194 5419 -881 5 1426 1237 55 0 0 chr12 110361626 110361772 -10895758 + B1_Mus2 SINE Alu 2 147 0 5 1426 297 0 0 0 chr12 110361772 110361805 -10895725 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1426 1752 204 12 20 chr12 110361863 110362208 -10895322 + RMER1B Other Other 37 378 -688 5 178 7387 112 16 25 chr12 110362208 110363552 -10893978 + L1_Mur2 LINE L1 1683 3118 -2759 5 1427 6545 133 34 15 chr12 110363548 110365119 -10892411 + Lx LINE L1 5056 6650 -4 5 1427 2609 148 7 89 chr12 110365145 110365442 -10892088 + L1VL4 LINE L1 537 797 -5561 5 1427 943 76 0 0 chr12 110365442 110365573 -10891957 + L1_Mus2 LINE L1 6433 6563 -3 5 1427 2609 110 2 26 chr12 110365573 110366070 -10891460 + L1VL4 LINE L1 798 1263 -2352 5 1427 22407 160 52 8 chr12 110366071 110372172 -10885358 + Lx2 LINE L1 615 6997 0 5 1427 574 332 31 50 chr12 110372139 110372522 -10885008 + L1MA6 LINE L1 5544 5919 -381 5 1427 1068 246 5 19 chr12 110372569 110372784 -10884746 + B3 SINE B2 5 216 0 6 1427 543 69 0 0 chr12 110372799 110372871 -10884659 + (GGGGA)n Simple_repeat Simple_repeat 5 76 0 6 1427 3756 284 56 107 chr12 110373051 110375036 -10882494 - Lx8 LINE L1 -1 7472 5588 6 1427 230 292 0 15 chr12 110375325 110375391 -10882139 + L1MA6 LINE L1 6221 6285 -15 5 1427 249 58 56 28 chr12 110375911 110375982 -10881548 + (CAAAA)n Simple_repeat Simple_repeat 2 74 0 6 1427 2351 88 6 9 chr12 110375999 110376319 -10881211 - ORR1A2 LTR MaLR -8 319 1 6 1427 500 290 36 25 chr12 110376530 110376768 -10880762 + L1MA5 LINE L1 5628 5936 -364 6 1427 588 53 0 0 chr12 110376975 110377051 -10880479 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 1427 3575 92 30 26 chr12 110377051 110377621 -10879909 + RMER17A LTR ERVK 7 578 -173 6 1427 831 206 43 72 chr12 110377963 110378172 -10879358 - B3 SINE B2 -6 210 8 6 1427 612 101 0 0 chr12 110378407 110378496 -10879034 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 6 1427 623 253 197 25 chr12 110378672 110378911 -10878619 + RMER15 LTR ERVL 296 575 0 6 1427 1223 84 6 0 chr12 110380220 110380398 -10877132 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 6 1427 862 299 83 4 chr12 110380424 110380676 -10876854 + B4 SINE B4 1 272 -20 6 1427 282 317 32 32 chr12 110380867 110380991 -10876539 + MER3 DNA MER1_type 84 207 -2 6 1427 418 303 156 59 chr12 110381205 110381609 -10875921 + L2a LINE L2 2963 3405 -21 6 1427 360 82 0 0 chr12 110382165 110382214 -10875316 - HAL1-3A_ME LINE L1 -834 2024 1976 6 1427 324 318 6 6 chr12 110382214 110382295 -10875235 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1427 890 90 0 15 chr12 110382295 110382430 -10875100 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 6 1427 403 223 23 40 chr12 110382430 110382580 -10874950 + (TCTCTG)n Simple_repeat Simple_repeat 1 147 0 6 1427 180 0 0 0 chr12 110382580 110382600 -10874930 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1427 403 223 23 40 chr12 110382600 110382631 -10874899 + (TCTCTG)n Simple_repeat Simple_repeat 5 37 0 6 1427 390 91 0 0 chr12 110382644 110382699 -10874831 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1427 1191 266 125 10 chr12 110383088 110383480 -10874050 - RMER5 LTR ERV1 -48 486 50 6 1427 2196 95 6 110 chr12 110383992 110384357 -10873173 + ORR1A2 LTR MaLR 1 327 0 6 1427 346 230 45 11 chr12 110384550 110384638 -10872892 + MIRb SINE MIR 99 189 -79 6 1427 1283 279 27 11 chr12 110384658 110385119 -10872411 + L1MEe LINE L1 2154 2583 -3297 6 1427 833 76 0 0 chr12 110385418 110385523 -10872007 - ORR1A3 LTR MaLR -8 318 214 6 1427 441 321 40 15 chr12 110385524 110385723 -10871807 + Lx4B LINE L1 621 824 -6904 6 1427 2142 176 64 21 chr12 110386071 110386552 -10870978 + Lx4B LINE L1 843 1344 -6384 6 1427 2219 103 22 6 chr12 110386558 110386872 -10870658 - ORR1A2 LTR MaLR -8 319 1 6 1427 8251 118 38 42 chr12 110386872 110388282 -10869248 - ORR1A2-int LTR MaLR 0 1963 559 6 1427 333 167 28 0 chr12 110388288 110388360 -10869170 - ORR1A2-int LTR MaLR -1323 640 567 6 1427 3204 127 14 4 chr12 110388429 110388929 -10868601 - MERVL-int LTR ERVL -237 5524 5020 6 1427 15330 104 36 3 chr12 110388932 110391197 -10866333 - MERVL-int LTR ERVL -853 4632 2295 6 1427 389 39 0 0 chr12 110391203 110391255 -10866275 - MERVL-int LTR ERVL -3425 2336 2285 6 1427 778 168 22 7 chr12 110391255 110391393 -10866137 - ORR1A2 LTR MaLR -186 140 1 6 1427 5281 187 66 2 chr12 110391398 110392629 -10864901 + Lx4B LINE L1 1354 2662 -3218 6 1427 3104 133 9 1 chr12 110392836 110393389 -10864141 + Lx4B LINE L1 3282 3826 -2051 6 1427 1732 61 4 9 chr12 110393392 110393625 -10863905 + MTA_Mm LTR MaLR 1 232 -164 6 1427 8201 155 37 8 chr12 110393625 110395777 -10861753 + Lx4B LINE L1 4394 6629 -429 6 1427 678 220 73 21 chr12 110395775 110395966 -10861564 + Lx4B LINE L1 6764 7055 -3 6 1427 1119 145 5 42 chr12 110395969 110396185 -10861345 + L1_Mur3 LINE L1 2650 2857 -3023 6 1427 30757 96 7 14 chr12 110396209 110402140 -10855390 + L1_Mus2 LINE L1 670 6566 0 6 1427 548 207 44 63 chr12 110402146 110402261 -10855269 + L1_Mur3 LINE L1 2870 2983 -2897 6 1427 748 178 242 32 chr12 110402261 110402447 -10855083 + URR1B DNA MER1_type 1 225 0 6 1427 548 207 44 63 chr12 110402447 110402537 -10854993 + L1_Mur3 LINE L1 2984 3071 -2809 6 1427 1771 171 46 48 chr12 110402544 110402895 -10854635 + ORR1B1 LTR MaLR 41 390 -4 6 1427 1554 165 60 23 chr12 110402895 110403279 -10854251 + L1_Mur3 LINE L1 3075 3472 -2408 6 1427 273 246 0 0 chr12 110403271 110403340 -10854190 + L1_Mur3 LINE L1 3613 3681 -2196 6 1427 5205 146 60 5 chr12 110403356 110403946 -10853584 + L1_Mur2 LINE L1 1440 2079 -3798 6 1427 504 32 0 0 chr12 110403946 110404008 -10853522 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1427 5205 146 60 5 chr12 110404008 110404424 -10853106 + L1_Mur2 LINE L1 2080 2500 -3377 6 1427 3985 229 36 26 chr12 110404439 110404773 -10852757 + Lx5 LINE L1 6089 6436 -614 6 1427 198 0 0 0 chr12 110404773 110404795 -10852735 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1427 3985 229 36 26 chr12 110404795 110405402 -10852128 + Lx5 LINE L1 6437 7038 -12 6 1427 951 215 14 10 chr12 110405744 110405951 -10851579 + RMER1C Other Other 35 242 -1100 6 1427 344 22 0 22 chr12 110405954 110406000 -10851530 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1427 627 14 0 0 chr12 110406000 110406071 -10851459 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1427 8373 48 5 0 chr12 110406144 110407260 -10850270 - L1Md_F3 LINE L1 -1516 4367 3247 6 1427 9468 47 1 0 chr12 110407259 110408479 -10849051 + L1Md_F3 LINE L1 4365 5585 -298 6 1427 8254 36 0 2 chr12 110408480 110409464 -10848066 + L1Md_F3 LINE L1 5587 6568 -16 6 1427 1507 35 25 0 chr12 110409472 110409670 -10847860 + L1Md_F3 LINE L1 6381 6583 -1 6 1427 345 64 0 0 chr12 110409683 110409730 -10847800 - L1_Mus1 LINE L1 -294 6273 6227 6 1427 2211 48 4 0 chr12 110409730 110410000 -10847530 + L1_Mus1 LINE L1 6297 6567 0 6 1427 668 124 18 0 chr12 110410004 110410117 -10847413 + (GAAA)n Simple_repeat Simple_repeat 3 117 0 6 1427 522 226 40 161 chr12 110410119 110410473 -10847057 + RLTR15 LTR ERVK 49 359 0 6 1427 884 326 21 67 chr12 110410676 110411048 -10846482 + RMER1C Other Other 416 770 -572 6 1427 2780 143 28 15 chr12 110411061 110411981 -10845549 + L1_Mur2 LINE L1 841 1769 -4108 6 1427 647 150 17 0 chr12 110412576 110412696 -10844834 + GA-rich Low_complexity Low_complexity 2 123 0 6 1427 976 214 9 0 chr12 110412696 110412916 -10844614 + L1_Mur2 LINE L1 1756 1977 -3903 6 1427 23 0 0 0 chr12 110413076 110413099 -10844431 + AT_rich Low_complexity Low_complexity 1 23 0 6 1427 12166 141 48 136 chr12 110413099 110413203 -10844327 + L1_Mur2 LINE L1 1963 2069 -3808 6 1427 180 0 0 0 chr12 110413203 110413223 -10844307 + (CCA)n Simple_repeat Simple_repeat 1 20 0 6 1427 12166 141 48 136 chr12 110413223 110415046 -10842484 + L1_Mur2 LINE L1 2070 3590 -2287 6 1427 2901 56 0 11 chr12 110415046 110415426 -10842104 + L1Md_F2 LINE L1 6205 6580 -2 6 1427 12166 141 48 136 chr12 110415426 110416821 -10840709 + L1_Mur2 LINE L1 3591 4994 -883 6 1427 31324 91 7 6 chr12 110416810 110422182 -10835348 + L1Md_F2 LINE L1 258 5586 -297 6 1427 8125 43 3 1 chr12 110422182 110423164 -10834366 + L1Md_F2 LINE L1 5587 6570 -12 6 1427 511 27 0 27 chr12 110423186 110423261 -10834269 + (CAAA)n Simple_repeat Simple_repeat 1 73 0 6 1427 4496 145 56 20 chr12 110423271 110423744 -10833786 + Lx5 LINE L1 4985 5452 -425 6 1427 1623 32 0 0 chr12 110423744 110423933 -10833597 + B2_Mm1a SINE B2 2 190 -3 6 1427 4496 151 66 8 chr12 110423933 110424682 -10832848 + Lx5 LINE L1 5453 6305 -745 6 1427 2739 58 6 14 chr12 110424685 110425034 -10832496 + ORR1A1 LTR MaLR 1 346 0 6 1427 11847 62 43 59 chr12 110425034 110425933 -10831597 + ORR1A1-int LTR MaLR 1 869 -923 6 1427 8465 30 1 0 chr12 110425933 110426926 -10830604 + L1Md_T LINE L1 5587 6580 -2 6 1427 11847 62 43 59 chr12 110426926 110427846 -10829684 + ORR1A1-int LTR MaLR 870 1791 -1 6 1427 2668 81 0 6 chr12 110427847 110428195 -10829335 + ORR1A1 LTR MaLR 1 346 0 6 1427 3747 199 18 16 chr12 110428207 110428944 -10828586 + Lx5 LINE L1 6310 7047 -3 6 1427 1396 159 13 55 chr12 110428951 110429258 -10828272 + RMER1C Other Other 1040 1333 -9 6 1427 3368 168 52 65 chr12 110429270 110429398 -10828132 + L1_Mur3 LINE L1 3943 4069 -1811 6 1427 240 35 0 0 chr12 110429398 110429427 -10828103 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1427 3368 168 52 65 chr12 110429427 110429953 -10827577 + L1_Mur3 LINE L1 4070 4623 -1257 6 1427 186 43 0 0 chr12 110429953 110429976 -10827554 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1427 1353 62 0 0 chr12 110429980 110430156 -10827374 + (GGGAGA)n Simple_repeat Simple_repeat 3 178 0 6 1427 3368 168 52 65 chr12 110430156 110430389 -10827141 + L1_Mur3 LINE L1 4624 4823 -1057 6 1427 2686 112 15 7 chr12 110430393 110430799 -10826731 + Lx3A LINE L1 6565 6973 -8 6 1427 29 0 0 0 chr12 110430800 110430829 -10826701 + AT_rich Low_complexity Low_complexity 1 29 0 6 1427 645 189 24 48 chr12 110430832 110430999 -10826531 - RMER4B LTR ERVK -406 179 17 6 1427 2903 159 12 50 chr12 110431007 110431657 -10825873 - MYSERV6-int LTR ERVK -54 8905 8356 6 1427 1383 238 13 42 chr12 110431690 110432076 -10825454 - MYSERV6-int LTR ERVK -614 5936 5562 6 1427 31 26 0 0 chr12 110432080 110432118 -10825412 + AT_rich Low_complexity Low_complexity 1 38 0 6 1427 12920 91 48 7 chr12 110432578 110435265 -10822265 - L1VL2 LINE L1 -636 2979 162 6 1427 692 217 40 44 chr12 110435265 110435516 -10822014 - MYSERV6-int LTR ERVK -973 5577 5328 6 1427 694 205 33 95 chr12 110435516 110435726 -10821804 - RMER4A LTR ERVK -29 556 250 6 1427 2007 258 8 47 chr12 110435730 110436348 -10821182 - MYSERV6-int LTR ERVK -1428 5122 4529 6 1427 3435 176 21 3 chr12 110436367 110437026 -10820504 - MurERV4_19-int LTR ERVK -109 5151 4481 6 1427 2751 87 0 84 chr12 110437026 110437490 -10820040 + RLTR11B LTR ERVK 1 425 -28 6 1427 15340 227 29 27 chr12 110437490 110441721 -10815809 - MurERV4_19-int LTR ERVK -1437 4343 190 6 1427 351 155 12 23 chr12 110441721 110441807 -10815723 + GA-rich Low_complexity Low_complexity 2 86 0 6 1427 751 241 61 5 chr12 110441812 110442008 -10815522 - MurERV4_19-int LTR ERVK -5053 207 1 6 1427 1248 230 132 98 chr12 110442018 110442578 -10814952 - RMER4B LTR ERVK -6 579 1 6 1427 1309 146 4 4 chr12 110442578 110442805 -10814725 - L1_Mm LINE L1 -1222 4661 4435 6 1427 11895 98 16 10 chr12 110442783 110444904 -10812626 - L1_Mur1 LINE L1 -2023 3863 1737 6 1427 6506 134 28 4 chr12 110444903 110446845 -10810685 + Lx LINE L1 4676 6650 -4 6 1427 3947 205 29 5 chr12 110446853 110447775 -10809755 + L1_Mur3 LINE L1 4853 5796 -84 6 1427 1868 229 37 30 chr12 110447781 110448412 -10809118 + L1VL4 LINE L1 56 864 -5494 6 1427 1050 61 0 0 chr12 110448414 110448545 -10808985 + B1_Mm SINE Alu 1 131 -16 6 1427 504 0 0 0 chr12 110448584 110448640 -10808890 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 1427 2500 112 48 0 chr12 110448680 110449175 -10808355 + MusHAL1 LINE L1 600 1117 -2236 6 1427 19610 146 22 45 chr12 110449176 110450990 -10806540 + L1VL2 LINE L1 626 2454 -3423 6 1427 188 34 0 33 chr12 110450990 110451020 -10806510 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1427 19610 176 18 73 chr12 110451020 110452729 -10804801 + L1VL2 LINE L1 2455 4190 -1687 6 1427 3174 56 10 0 chr12 110452729 110453125 -10804405 + MTB LTR MaLR 1 400 0 6 1427 1987 72 17 38 chr12 110453125 110453415 -10804115 + MTA_Mm LTR MaLR 113 396 0 6 1427 19610 176 18 73 chr12 110453415 110454663 -10802867 + L1VL2 LINE L1 4191 5451 -426 6 1427 6319 42 0 0 chr12 110454663 110455417 -10802113 + L1Md_T LINE L1 5829 6582 0 6 1427 19610 176 18 73 chr12 110455417 110455716 -10801814 + L1VL2 LINE L1 5452 5746 -131 6 1427 687 84 0 0 chr12 110455723 110455818 -10801712 + (CA)n Simple_repeat Simple_repeat 2 96 0 6 1427 5293 211 91 30 chr12 110455825 110457213 -10800317 + Lx7 LINE L1 6221 7692 -4 6 1427 385 216 69 0 chr12 110457216 110457332 -10800198 + L1_Mur3 LINE L1 2580 2703 -3144 6 1427 1144 230 199 85 chr12 110457356 110457874 -10799656 - RMER4B LTR ERVK -8 577 1 6 1427 4001 158 48 95 chr12 110457874 110458888 -10798642 - MYSERV6-int LTR ERVK 0 8959 7993 6 1427 1371 72 0 0 chr12 110458888 110459175 -10798355 - L1_Mus1 LINE L1 0 6567 6381 6 1427 4622 87 1 0 chr12 110459175 110459831 -10797699 + L1_Mm LINE L1 4987 5643 -240 6 1427 312 201 89 30 chr12 110459848 110459920 -10797610 - MYSERV-int LTR ERVK -1026 5524 5450 6 1427 1134 62 21 0 chr12 110459920 110460064 -10797466 + B1_Mm SINE Alu 1 147 0 6 1427 312 201 89 30 chr12 110460064 110460160 -10797370 - MYSERV-int LTR ERVK -1101 5449 5346 6 1427 755 300 63 19 chr12 110460263 110460579 -10796951 - MurERV4-int LTR ERVK -3553 1707 1378 6 1427 328 236 80 16 chr12 110460821 110460946 -10796584 - MurERV4-int LTR ERVK -4762 498 366 6 1427 202 213 0 21 chr12 110461023 110461071 -10796459 + GA-rich Low_complexity Low_complexity 2 48 0 6 1427 470 226 29 0 chr12 110461158 110461260 -10796270 - MurERV4-int LTR ERVK -5103 157 53 6 1427 427 242 12 17 chr12 110461316 110461493 -10796037 + L1_Mur3 LINE L1 3082 3270 -2607 6 1427 207 100 0 0 chr12 110461493 110461523 -10796007 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 6 1427 307 314 32 26 chr12 110461526 110461837 -10795693 + L1_Mur3 LINE L1 3219 3531 -2349 6 1427 18027 152 101 18 chr12 110461848 110467610 -10789920 - Lx LINE L1 0 6654 395 6 1427 2188 233 66 10 chr12 110467621 110468301 -10789229 + L1_Mur3 LINE L1 3550 4267 -1613 6 1427 241 287 0 0 chr12 110468377 110468464 -10789066 + L1VL1 LINE L1 279 365 -6057 6 1427 421 264 43 7 chr12 110468608 110468749 -10788781 + L1Md_F LINE L1 567 712 -5807 7 1427 2910 126 1 127 chr12 110468751 110469835 -10787695 + L1Md_F LINE L1 628 1554 -2263 7 1427 32946 68 20 13 chr12 110469843 110475113 -10782417 + L1Md_F3 LINE L1 175 5586 -297 7 1427 8013 40 10 0 chr12 110475113 110476085 -10781445 + L1Md_F3 LINE L1 5587 6568 -16 7 1427 14479 102 1 0 chr12 110476306 110478536 -10778994 + L1_Mm LINE L1 1637 3868 -2015 7 1427 34297 49 8 5 chr12 110478542 110483836 -10773694 + L1Md_T LINE L1 313 5586 -297 7 1427 8019 53 1 0 chr12 110483836 110484829 -10772701 + L1Md_T LINE L1 5587 6580 -2 7 1427 13765 80 8 7 chr12 110484847 110487578 -10769952 + L1_Mus1 LINE L1 3838 6567 0 7 1427 242 133 200 0 chr12 110487591 110487610 -10769920 + L1_Mur3 LINE L1 4256 4275 -1605 7 1427 315 0 0 0 chr12 110487610 110487645 -10769885 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1427 243 194 65 0 chr12 110487645 110487707 -10769823 + Lx4B LINE L1 4295 4360 -1526 7 1427 206 62 31 0 chr12 110487712 110487744 -10769786 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1427 1381 204 91 48 chr12 110487812 110488208 -10769322 - MTD LTR MaLR -2 417 5 7 1427 7186 199 53 22 chr12 110488262 110490680 -10766850 + Lx4B LINE L1 4499 7007 -1 7 1427 1084 261 52 33 chr12 110490674 110491038 -10766492 + L1_Mur3 LINE L1 4440 4812 -1068 7 1427 1078 91 7 0 chr12 110491038 110491181 -10766349 - B1_Mus2 SINE Alu -2 145 2 7 1427 1084 261 52 33 chr12 110491181 110491240 -10766290 + L1_Mur3 LINE L1 4813 4871 -1009 7 1427 684 152 0 0 chr12 110491647 110491765 -10765765 + CT-rich Low_complexity Low_complexity 2 119 0 7 1427 213 39 0 0 chr12 110491765 110491791 -10765739 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1427 306 208 118 59 chr12 110491910 110492012 -10765518 + L1M2 LINE L1 4582 4689 -1454 7 1427 428 292 80 80 chr12 110492037 110492249 -10765281 - RMER2 LTR ERV1 -27 540 329 7 1427 490 304 48 45 chr12 110492499 110493094 -10764436 + L1M2 LINE L1 4696 5287 -853 7 1427 324 306 18 37 chr12 110493134 110493395 -10764135 + L1M2 LINE L1 5338 5591 -706 7 178 1752 145 108 63 chr12 110493414 110493776 -10763754 + ORR1C1 LTR MaLR 1 378 0 7 1428 1083 104 0 0 chr12 110493832 110494179 -10763351 + (TG)n Simple_repeat Simple_repeat 1 347 0 7 1428 2193 212 32 87 chr12 110494217 110494327 -10763203 - Lx6 LINE L1 -176 7284 7174 7 1428 2261 150 61 8 chr12 110494327 110494723 -10762807 + MTC LTR MaLR 1 417 -4 7 1428 2193 212 32 87 chr12 110494723 110495200 -10762330 - Lx6 LINE L1 -287 7173 6730 7 1428 788 152 57 21 chr12 110495200 110495341 -10762189 + B1_Mus1 SINE Alu 1 146 -2 7 1428 3826 216 15 35 chr12 110495363 110496223 -10761307 - Lx6 LINE L1 -721 6739 5897 7 1428 4151 137 98 2 chr12 110496227 110496396 -10761134 + L1_Mur3 LINE L1 4255 4423 -1457 7 1428 185 0 0 39 chr12 110496396 110496422 -10761108 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1428 4151 137 98 2 chr12 110496422 110497048 -10760482 + L1_Mur3 LINE L1 4424 5125 -755 7 1428 16366 59 2 8 chr12 110497063 110500000 -10757530 - L1Md_F2 LINE L1 0 6582 3663 7 1428 17225 77 2 1 chr12 110500000 110503508 -10754022 - L1Md_F LINE L1 -2221 3662 152 1 1428 324 0 0 0 chr12 110503522 110503558 -10753972 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1428 939 273 66 24 chr12 110503567 110503892 -10753638 + Lx8 LINE L1 6190 6531 -1165 3 1428 1645 280 137 15 chr12 110504264 110505003 -10752527 + Lx8 LINE L1 6558 7386 -87 3 1428 689 277 158 9 chr12 110505032 110505449 -10752081 - Lx9 LINE L1 -5 7468 6989 4 1428 1017 300 71 35 chr12 110505459 110506063 -10751467 - L1_Mur3 LINE L1 -1949 3931 3306 5 1428 494 302 64 77 chr12 110506073 110506686 -10750844 - L1M2 LINE L1 -2640 3503 2899 6 1428 2727 248 50 47 chr12 110506706 110506851 -10750679 - Lx9 LINE L1 -5 7639 7497 7 1428 4029 162 94 73 chr12 110506851 110507735 -10749795 - RMER19B LTR ERVK 0 902 1 8 1428 2727 248 50 47 chr12 110507735 110508538 -10748992 - Lx9 LINE L1 -148 7496 6689 7 1428 2849 257 44 33 chr12 110508535 110509969 -10747561 - Lx9 LINE L1 -1003 6470 5015 4 1428 1785 260 42 70 chr12 110509980 110510583 -10746947 - RLTR18 LTR ERVK -4 612 27 9 1428 713 231 114 11 chr12 110510593 110510777 -10746753 - RLTR18B LTR ERVK -309 203 1 1 1428 927 211 96 44 chr12 110510793 110511065 -10746465 - RLTR18-int LTR ERVK -18 5343 5058 1 1428 2638 148 41 0 chr12 110511081 110511519 -10746011 - RMER19B LTR ERVK -12 890 435 1 1428 2373 169 26 24 chr12 110511847 110512314 -10745216 + L1VL4 LINE L1 301 768 -5534 1 1428 4247 33 22 0 chr12 110512294 110512836 -10744694 + L1Md_F2 LINE L1 5032 5585 -298 1 1428 8099 37 13 2 chr12 110512837 110513820 -10743710 + L1Md_F2 LINE L1 5587 6580 -2 1 1428 14212 97 22 7 chr12 110513820 110516164 -10741366 + L1VL4 LINE L1 756 3121 -438 1 1428 306 0 0 0 chr12 110516164 110516198 -10741332 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1428 14212 101 24 8 chr12 110516198 110516277 -10741253 + L1VL4 LINE L1 3122 3215 -344 1 1428 1116 269 57 7 chr12 110516803 110517208 -10740322 - Lx9 LINE L1 -1012 4868 4444 4 1428 8451 192 90 24 chr12 110517210 110519641 -10737889 - Lx2B LINE L1 -4 6996 4463 1 1428 1150 225 78 33 chr12 110519641 110520036 -10737494 + MTD LTR MaLR 5 417 -2 1 1428 8451 196 62 26 chr12 110520036 110520191 -10737339 - Lx2B LINE L1 -1415 4462 4276 1 1428 486 33 0 0 chr12 110520191 110520251 -10737279 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1428 8451 196 62 26 chr12 110520251 110520938 -10736592 - Lx2B LINE L1 -1602 4275 3548 1 1428 4234 146 22 5 chr12 110520956 110521713 -10735817 + L1VL2 LINE L1 179 925 -5493 1 1428 18219 157 39 12 chr12 110521701 110522280 -10735250 + Lx2 LINE L1 2249 2820 -3066 1 1428 243 23 0 64 chr12 110522280 110522327 -10735203 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 1428 18219 157 39 12 chr12 110522327 110524063 -10733467 + Lx2 LINE L1 2821 4653 -1233 1 1428 3045 129 138 8 chr12 110524063 110524579 -10732951 - MT2B2 LTR ERVL -1 583 1 2 1428 18219 130 28 9 chr12 110524579 110526242 -10731288 + Lx2 LINE L1 4654 6326 -671 1 1428 14076 63 143 0 chr12 110526237 110528355 -10729175 + L1_Mm LINE L1 2182 4603 -1280 2 1428 455 86 0 24 chr12 110528356 110528439 -10729091 + L1Md_F2 LINE L1 6502 6582 0 2 1428 4166 118 16 0 chr12 110528436 110529046 -10728484 + Lx2 LINE L1 6370 6989 -8 1 1428 930 47 158 0 chr12 110529975 110530102 -10727428 - B1_Mus1 SINE Alu 0 148 2 2 1428 2930 213 20 80 chr12 110531453 110532258 -10725272 - RLTR18-int LTR ERVK -486 4875 4119 2 1428 798 189 28 14 chr12 110532302 110532447 -10725083 - B1_Mur3 SINE Alu -2 147 1 2 1428 245 182 30 15 chr12 110532739 110532806 -10724724 + A-rich Low_complexity Low_complexity 3 70 0 2 1428 1382 125 360 10 chr12 110533376 110533668 -10723862 + ORR1B1 LTR MaLR 1 394 0 2 1428 3652 174 36 159 chr12 110533668 110535447 -10722083 + ORR1B1-int LTR MaLR 1 1509 0 2 1428 1855 159 45 0 chr12 110535447 110535781 -10721749 + ORR1B1 LTR MaLR 1 349 -45 2 1428 11545 150 13 1 chr12 110535784 110537896 -10719634 - Lx LINE L1 -1731 4155 2017 2 1428 8139 168 19 28 chr12 110537898 110538391 -10719139 + Lx LINE L1 4150 4638 -1239 2 1428 272 48 0 23 chr12 110538391 110538434 -10719096 + (CAA)n Simple_repeat Simple_repeat 2 43 0 3 1428 8139 148 16 22 chr12 110538434 110539725 -10717805 + Lx LINE L1 4639 5925 -729 2 1428 3064 73 2 15 chr12 110539725 110540130 -10717400 + MTB LTR MaLR 1 400 0 3 1428 7291 89 8 6 chr12 110540130 110540846 -10716684 + Lx LINE L1 5926 6644 -10 2 1428 225 0 0 0 chr12 110540883 110540908 -10716622 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1428 303 80 100 0 chr12 110540908 110540958 -10716572 + ORR1B1 LTR MaLR 340 394 0 2 1428 195 42 0 0 chr12 110541736 110541760 -10715770 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 3 1428 1979 165 13 16 chr12 110541788 110542176 -10715354 - RLTR18-int LTR ERVK -1795 3566 3180 2 1428 1107 158 5 0 chr12 110542174 110542364 -10715166 - RLTR18-int LTR ERVK -2360 3001 2811 2 1428 24027 150 11 8 chr12 110542426 110546499 -10711031 + Lx LINE L1 565 4649 -1237 3 1428 246 32 0 0 chr12 110546499 110546530 -10711000 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 3 1428 24027 145 17 8 chr12 110546530 110548512 -10709018 + Lx LINE L1 4650 6645 -9 3 1428 412 265 53 0 chr12 110548526 110548658 -10708872 - RLTR18-int LTR ERVK -2694 2667 2529 2 1428 217 178 22 0 chr12 110548750 110548795 -10708735 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3 1428 1278 259 34 23 chr12 110549049 110549437 -10708093 - RLTR18-int LTR ERVK -4954 407 16 2 1428 939 254 20 28 chr12 110549470 110549715 -10707815 - RLTR18B LTR ERVK 0 512 270 2 1428 580 188 4 25 chr12 110549715 110549829 -10707701 + B1_Mus1 SINE Alu 1 112 -8 3 1428 343 292 217 19 chr12 110549817 110549974 -10707556 - MTE-int LTR MaLR -751 829 642 3 1428 663 244 0 6 chr12 110549974 110550147 -10707383 + L1_Rod LINE L1 4622 4793 -1054 3 1428 2347 272 85 35 chr12 110550169 110550464 -10707066 + ORR1E-int LTR MaLR 836 1156 -424 4 1428 513 0 0 0 chr12 110550464 110550521 -10707009 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1428 495 73 0 0 chr12 110550522 110550590 -10706940 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1428 2347 272 85 35 chr12 110550590 110550950 -10706580 + ORR1E-int LTR MaLR 1157 1527 -53 4 1428 700 258 250 3 chr12 110550950 110551238 -10706292 + ORR1E LTR MaLR 1 359 0 4 1428 801 314 71 25 chr12 110551303 110551865 -10705665 - L1M4c LINE L1 -3417 3368 2781 4 1428 268 272 65 38 chr12 110552088 110552317 -10705213 - L1M4c LINE L1 -4719 2071 1974 4 1428 251 314 57 0 chr12 110552443 110552602 -10704928 - L1M4c LINE L1 -4812 1977 1810 4 1428 506 252 0 18 chr12 110552671 110552784 -10704746 + PB1D10 SINE Alu 7 117 0 4 1428 203 122 49 0 chr12 110552784 110552825 -10704705 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 4 1428 384 22 0 0 chr12 110552928 110552973 -10704557 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1428 295 250 17 0 chr12 110552977 110553037 -10704493 - tRNA-Ala-GCY_ tRNA tRNA -12 63 3 4 1428 294 297 26 18 chr12 110553044 110553157 -10704373 - PB1D10 SINE Alu -2 115 2 4 1428 212 243 0 67 chr12 110553449 110553524 -10704006 + GA-rich Low_complexity Low_complexity 1 70 0 4 1428 299 223 73 64 chr12 110553524 110553634 -10703896 + BC1_Mm scRNA scRNA 1 111 -41 5 1428 228 35 0 0 chr12 110553848 110553877 -10703653 + (CAGTC)n Simple_repeat Simple_repeat 2 30 0 5 1428 330 287 139 12 chr12 110554565 110554793 -10702737 + ORR1D2 LTR MaLR 83 370 -9 5 1428 1242 233 157 6 chr12 110555188 110555525 -10702005 - MTD LTR MaLR -14 405 18 5 1428 4076 165 71 72 chr12 110555681 110556584 -10700946 + RMER19B LTR ERVK 1 902 0 5 1428 233 367 46 88 chr12 110556665 110556928 -10700602 - LTR16C LTR ERVL -153 336 85 5 1428 454 242 87 140 chr12 110556931 110557279 -10700251 + L1M2 LINE L1 4462 4795 -1348 5 1428 3293 48 2 2 chr12 110557381 110557777 -10699753 - MTA_Mm LTR MaLR 0 396 1 5 1428 8321 70 10 3 chr12 110557777 110558867 -10698663 - MTA_Mm-int LTR MaLR 0 1098 1 5 1428 3028 56 7 77 chr12 110558867 110559296 -10698234 - MTA_Mm LTR MaLR 0 400 2 5 1428 265 295 11 11 chr12 110559615 110559704 -10697826 + MLT1C LTR MaLR 59 147 -320 5 1428 414 181 0 0 chr12 110560253 110560358 -10697172 + GA-rich Low_complexity Low_complexity 1 105 0 5 1428 246 273 14 64 chr12 110560358 110560387 -10697143 + L1M2 LINE L1 2757 2778 -4071 6 1428 255 324 0 0 chr12 110560387 110560461 -10697069 + ID4 SINE ID 2 75 -8 6 1428 246 273 14 64 chr12 110560461 110560572 -10696958 + L1M2 LINE L1 2779 2890 -3959 6 1428 554 279 61 129 chr12 110560572 110560835 -10696695 + B4A SINE B4 48 292 0 6 1428 198 152 33 17 chr12 110560844 110560904 -10696626 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1428 829 60 47 18 chr12 110560915 110561085 -10696445 + (CA)n Simple_repeat Simple_repeat 2 176 0 6 1428 291 307 109 21 chr12 110561096 110561289 -10696241 + L1M2 LINE L1 2878 3087 -3758 6 1428 238 333 32 49 chr12 110561294 110561417 -10696113 + MLT1A1 LTR MaLR 1 121 -287 6 1428 2148 225 87 17 chr12 110561485 110562001 -10695529 + RMER1C Other Other 775 1326 -16 6 1428 259 250 45 83 chr12 110562475 110562632 -10694898 + Lx9 LINE L1 7490 7640 -4 6 1428 1276 261 74 54 chr12 110562637 110563326 -10694204 + L1M2 LINE L1 3287 3989 -2856 6 1428 640 311 85 74 chr12 110563534 110564086 -10693444 + Lx9 LINE L1 7055 7612 -32 6 1428 1436 195 122 3 chr12 110564238 110564608 -10692922 - MTD LTR MaLR 0 419 6 6 1428 297 20 19 39 chr12 110564608 110564660 -10692870 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1428 1103 263 92 22 chr12 110564674 110565118 -10692412 + L1_Mur3 LINE L1 547 1021 -6707 7 1428 769 190 0 0 chr12 110565169 110565290 -10692240 + RMER1B Other Other 594 714 -352 7 1428 1477 191 4 4 chr12 110565387 110565639 -10691891 + RMER1C Other Other 45 296 -1046 7 1428 317 296 0 10 chr12 110565785 110565884 -10691646 + RMER1C Other Other 32 129 -1213 7 1428 4455 118 25 12 chr12 110565940 110566482 -10691048 - Lx4A LINE L1 -786 6272 5739 7 1428 5615 143 22 4 chr12 110566482 110567403 -10690127 - Lx2B LINE L1 0 7000 6064 7 1428 4455 104 32 2 chr12 110567403 110567812 -10689718 - Lx4A LINE L1 -1320 5738 5306 7 1428 3244 129 6 0 chr12 110567804 110568270 -10689260 + Lx4A LINE L1 6285 6753 -305 7 1428 2125 80 16 9 chr12 110568274 110568591 -10688939 - ORR1A2 LTR MaLR -8 319 1 7 1428 11263 132 52 15 chr12 110568591 110570484 -10687046 - ORR1A2-int LTR MaLR 0 1963 1 7 1428 2420 101 3 0 chr12 110570484 110570810 -10686720 - ORR1A2 LTR MaLR 0 327 1 7 1428 1869 150 3 10 chr12 110570810 110571113 -10686417 + Lx4A LINE L1 6749 7049 -9 7 1428 204 111 0 0 chr12 110571113 110571149 -10686381 + (GA)n Simple_repeat Simple_repeat 2 37 0 7 1428 411 264 9 35 chr12 110571152 110571266 -10686264 + RMER1C Other Other 416 526 -816 7 1428 2955 254 29 169 chr12 110571279 110571664 -10685866 + RMER1C Other Other 377 758 -584 7 1428 2051 128 18 56 chr12 110571664 110572003 -10685527 - ORR1A3 LTR MaLR 0 326 1 8 1428 2955 254 29 169 chr12 110572003 110572307 -10685223 + RMER1C Other Other 759 1044 -298 7 1428 908 67 0 0 chr12 110572307 110572426 -10685104 - B1_Mus2 SINE Alu 0 147 29 8 1428 2955 254 29 169 chr12 110572426 110572741 -10684789 + RMER1C Other Other 1045 1342 0 7 1428 6139 177 23 50 chr12 110572736 110573307 -10684223 + L1_Mur3 LINE L1 1006 1566 -4314 7 1428 716 231 0 7 chr12 110573307 110573455 -10684075 + B1_Mur2 SINE Alu 2 148 -1 8 1428 6139 179 22 34 chr12 110573455 110574418 -10683112 + L1_Mur3 LINE L1 1567 2525 -3355 7 1428 3014 182 14 54 chr12 110574407 110575035 -10682495 - L1_Mur3 LINE L1 -905 4975 4373 8 1428 37114 63 3 6 chr12 110575051 110581229 -10676301 - L1Md_F3 LINE L1 -14 6570 441 8 1428 494 228 0 9 chr12 110581261 110581376 -10676154 - L1_Mur3 LINE L1 -1502 4378 4265 8 1428 3591 195 46 32 chr12 110581371 110582430 -10675100 + Lx7 LINE L1 5133 6220 -1476 8 1428 255 31 0 0 chr12 110582430 110582462 -10675068 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 1428 3591 195 47 48 chr12 110582462 110582557 -10674973 + Lx7 LINE L1 6221 6314 -1382 8 1428 3007 166 14 59 chr12 110582557 110583148 -10674382 + RLTR12A LTR ERVK 1 564 -4 8 1428 3591 195 47 48 chr12 110583148 110583267 -10674263 + Lx7 LINE L1 6315 6425 -1271 8 1428 2250 140 91 11 chr12 110583271 110583849 -10673681 - RMER6A LTR ERVK 0 756 1 8 1428 2368 211 4 25 chr12 110583856 110584327 -10673203 + Lx7 LINE L1 6431 6891 -805 8 1428 1302 212 66 35 chr12 110584324 110584642 -10672888 + Lx7 LINE L1 7148 7475 -221 8 1428 7168 93 5 10 chr12 110584643 110586207 -10671323 - Lx3C LINE L1 -514 6462 4906 8 1428 24588 143 25 18 chr12 110586206 110587833 -10669697 - Lx2A LINE L1 -970 6038 4390 9 1428 1458 83 0 5 chr12 110587833 110588027 -10669503 + B2_Mm2 SINE B2 1 193 -2 9 1428 24588 165 34 25 chr12 110588027 110591958 -10665572 - Lx2A LINE L1 -1497 4389 3 9 1428 371 168 118 50 chr12 110591992 110592111 -10665419 + Lx7 LINE L1 7565 7691 -5 8 1428 368 56 37 0 chr12 110592484 110592538 -10664992 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 9 1428 503 276 116 35 chr12 110592568 110592853 -10664677 + L1MA5 LINE L1 5628 5935 -365 9 1428 5238 27 3 2 chr12 110592984 110593581 -10663949 + L1Md_F2 LINE L1 5972 6569 -13 9 1428 854 19 10 0 chr12 110593586 110593690 -10663840 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 9 1428 895 205 63 10 chr12 110594069 110594276 -10663254 + URR1A DNA MER1_type 4 221 -5 9 1428 1022 38 106 0 chr12 110594426 110594558 -10662972 - B1_Mus2 SINE Alu 0 147 2 9 1428 481 157 87 10 chr12 110594582 110594685 -10662845 - B3 SINE B2 -103 113 3 9 1428 601 195 8 8 chr12 110595611 110595735 -10661795 + B1_Mur1 SINE Alu 21 144 -5 9 1428 1948 291 62 39 chr12 110595857 110596977 -10660553 + L1_Mur3 LINE L1 1474 2619 -3261 1 1428 2818 276 38 36 chr12 110596986 110597973 -10659557 - Lx8 LINE L1 -521 7175 6173 1 1428 337 217 58 0 chr12 110597973 110598042 -10659488 + Lx8 LINE L1 7176 7248 -225 1 1428 975 284 36 22 chr12 110598139 110598502 -10659028 + L1_Mur3 LINE L1 2604 2971 -2909 1 1428 2654 127 72 34 chr12 110598510 110599007 -10658523 + RLTR20D LTR ERVK 1 516 -52 1 1428 795 40 0 0 chr12 110599175 110599274 -10658256 + (GA)n Simple_repeat Simple_repeat 2 100 0 1 1428 6994 179 53 34 chr12 110599399 110600706 -10656824 + MYSERV16_I-int LTR ERVK 5 1393 -1449 1 1428 1478 83 0 5 chr12 110600706 110600900 -10656630 + B2_Mm2 SINE B2 2 194 -1 1 1428 6994 122 55 14 chr12 110600900 110601840 -10655690 + MYSERV16_I-int LTR ERVK 1311 2301 -25 1 1428 261 118 0 0 chr12 110601852 110601903 -10655627 + (TTGG)n Simple_repeat Simple_repeat 1 51 0 1 1428 2990 147 44 9 chr12 110601934 110602390 -10655140 + RLTR20D LTR ERVK 1 464 -104 1 1428 324 0 0 0 chr12 110602390 110602426 -10655104 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1428 2990 147 44 9 chr12 110602426 110602518 -10655012 + RLTR20D LTR ERVK 465 566 -2 1 1428 1231 74 6 6 chr12 110602662 110602839 -10654691 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1 1428 2651 278 73 32 chr12 110602856 110603489 -10654041 + L1M2 LINE L1 3029 3693 -2450 1 1428 261 0 0 0 chr12 110603489 110603518 -10654012 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1428 2651 278 73 32 chr12 110603518 110603623 -10653907 + L1M2 LINE L1 3694 3799 -2344 1 1428 1347 104 0 10 chr12 110603623 110603817 -10653713 + B2_Mm2 SINE B2 1 192 -3 1 1428 2651 278 73 32 chr12 110603817 110603846 -10653684 + L1M2 LINE L1 3800 3841 -2302 1 1428 375 60 0 0 chr12 110603846 110603896 -10653634 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1428 2651 278 73 32 chr12 110603896 110604394 -10653136 + L1M2 LINE L1 3842 4346 -1797 1 1428 1825 164 10 71 chr12 110604399 110604583 -10652947 + ORR1C1 LTR MaLR 1 166 -212 1 1428 189 74 0 0 chr12 110604583 110604610 -10652920 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 1 1428 1825 164 10 71 chr12 110604610 110604819 -10652711 + ORR1C1 LTR MaLR 167 370 -8 1 1428 4002 225 44 27 chr12 110604844 110605910 -10651620 + ORR1C1-int LTR MaLR 65 1148 -222 1 1428 327 185 15 0 chr12 110605893 110605958 -10651572 + ORR1C1 LTR MaLR 313 378 0 1 1428 4156 293 66 64 chr12 110605969 110608159 -10649371 + Lx8 LINE L1 4328 6508 -965 1 1428 1841 134 43 188 chr12 110608159 110608601 -10648929 - ORR1C1 LTR MaLR 0 378 1 1 1428 4156 283 57 47 chr12 110608601 110609218 -10648312 + Lx8 LINE L1 6509 7147 -326 1 1428 338 313 165 26 chr12 110609584 110609850 -10647680 + L1MA5 LINE L1 5990 6292 -8 1 1428 587 157 46 0 chr12 110609870 110609978 -10647552 + B1_Mus1 SINE Alu 12 124 -24 1 1428 579 226 27 7 chr12 110610132 110610279 -10647251 - RMER5 LTR ERV1 -2 532 383 1 1428 853 238 26 89 chr12 110610309 110610613 -10646917 - RMER5 LTR ERV1 -249 285 1 1 1428 374 186 19 5 chr12 110610831 110610910 -10646620 + RSINE1 SINE B4 2 82 -83 1 1428 810 19 0 27 chr12 110610910 110611021 -10646509 + (GGAGA)n Simple_repeat Simple_repeat 1 108 0 1 1428 223 326 12 0 chr12 110611051 110611137 -10646393 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1428 195 274 0 19 chr12 110611738 110611790 -10645740 + MIR SINE MIR 83 133 -75 1 1428 226 173 58 0 chr12 110612151 110612203 -10645327 - PB1 SINE Alu 0 127 73 1 1428 722 251 72 48 chr12 110612158 110612367 -10645163 - ID_B1 SINE B4 -8 216 3 1 1428 391 315 54 35 chr12 110613065 110613390 -10644140 - LTR41 LTR ERVL -331 437 1 1 1428 521 284 53 12 chr12 110613672 110613804 -10643726 + B3A SINE B2 2 137 -61 1 1428 3757 61 21 2 chr12 110613804 110614277 -10643253 + RLTR45 LTR ERVK 1 482 0 1 1428 521 291 62 17 chr12 110614277 110614336 -10643194 + B3A SINE B2 136 202 -14 1 1428 2372 47 23 13 chr12 110614520 110614823 -10642707 - L1Md_F3 LINE L1 -14 6570 6265 1 1428 4703 29 0 0 chr12 110614823 110615597 -10641933 - L1Md_F3 LINE L1 -516 6068 5295 1 1428 459 0 0 0 chr12 110616396 110616447 -10641083 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1428 582 295 162 4 chr12 110616583 110616848 -10640682 + MLT1A0 LTR MaLR 58 364 -1 1 1428 273 135 19 0 chr12 110617034 110617086 -10640444 + ERVL-int LTR ERVL 1030 1082 -4679 1 1428 1857 296 71 14 chr12 110617103 110618241 -10639289 + ERVL-int LTR ERVL 1135 2401 -3360 1 1428 1815 270 203 9 chr12 110618312 110618685 -10638845 + Lx8 LINE L1 6505 6966 -507 1 1428 470 79 13 0 chr12 110618685 110618761 -10638769 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1428 1815 271 73 11 chr12 110618761 110619064 -10638466 + Lx8 LINE L1 6967 7271 -202 1 1428 423 297 0 0 chr12 110619451 110619542 -10637988 - RMER1B Other Other -405 661 571 1 1428 1985 145 91 6 chr12 110619544 110619905 -10637625 + RMER1B Other Other 657 1048 -18 1 1428 2073 187 74 150 chr12 110619906 110620566 -10636964 + RMER19C LTR ERVK 2 611 0 1 1428 392 261 7 21 chr12 110620596 110620741 -10636789 - L1M2 LINE L1 -674 5626 5484 1 1428 4200 156 14 4 chr12 110620754 110621449 -10636081 - RMER1B Other Other -9 1057 356 1 1428 533 188 34 0 chr12 110621751 110621868 -10635662 - ORR1C1 LTR MaLR -87 291 171 1 1428 1678 291 51 42 chr12 110621874 110622891 -10634639 - L1M2 LINE L1 -696 5484 4462 1 1428 345 47 0 0 chr12 110622916 110622959 -10634571 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1428 711 194 66 66 chr12 110622960 110623142 -10634388 - B3A SINE B2 -16 182 1 1 1428 247 250 0 0 chr12 110623178 110623230 -10634300 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1428 631 206 125 0 chr12 110623231 110623367 -10634163 - RSINE1 SINE B4 -2 163 11 1 1428 346 304 12 85 chr12 110623473 110623721 -10633809 - L1M2 LINE L1 -2469 3674 3437 1 1428 2246 176 136 7 chr12 110623877 110624340 -10633190 - Lx7 LINE L1 -308 7388 6866 1 1428 289 276 61 3 chr12 110624349 110624482 -10633048 - L1M2 LINE L1 -2684 3459 3314 1 1428 740 143 8 0 chr12 110624483 110624503 -10633027 + polypurine Low_complexity Low_complexity 3 22 0 1 1428 1200 55 7 0 chr12 110624503 110624649 -10632881 + B1_Mus2 SINE Alu 1 147 0 1 1428 740 143 8 0 chr12 110624649 110624761 -10632769 + polypurine Low_complexity Low_complexity 23 135 0 1 1429 1394 327 40 68 chr12 110624779 110625440 -10632090 - L1M2 LINE L1 -2795 3348 2701 1 1429 2771 134 42 35 chr12 110625440 110625896 -10631634 + RMER6B LTR ERVK 3 461 0 1 1429 1394 327 40 68 chr12 110625896 110626448 -10631082 - L1M2 LINE L1 -3443 2700 2168 1 1429 277 232 112 67 chr12 110626852 110626986 -10630544 - MLT1A1 LTR MaLR -1 407 268 1 1429 1020 122 22 11 chr12 110627390 110627572 -10629958 + URR1B DNA MER1_type 37 220 -5 1 1429 513 360 102 38 chr12 110627646 110628117 -10629413 + MLT1F2 LTR MaLR 2 502 -58 1 1429 249 159 0 0 chr12 110628127 110628171 -10629359 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1429 342 98 0 0 chr12 110628350 110628401 -10629129 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1429 239 313 97 42 chr12 110629177 110629452 -10628078 - LTR41 LTR ERVL 0 768 435 1 1429 362 303 22 0 chr12 110630158 110630265 -10627265 + MIR SINE MIR 60 164 -98 1 1429 2200 97 20 67 chr12 110630393 110630735 -10626795 + ORR1A3 LTR MaLR 1 326 0 1 1429 801 280 77 5 chr12 110633439 110633647 -10623883 + ID_B1 SINE B4 2 224 0 1 1429 192 97 0 0 chr12 110633965 110633996 -10623534 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1429 567 271 52 23 chr12 110633996 110634170 -10623360 - B3A SINE B2 -11 187 9 1 1429 198 0 0 0 chr12 110634353 110634375 -10623155 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1429 25 31 0 0 chr12 110636638 110636670 -10620860 + GC_rich Low_complexity Low_complexity 1 32 0 1 1429 526 259 119 0 chr12 110636768 110636953 -10620577 + ID_B1 SINE B4 3 209 -15 1 1429 700 231 26 0 chr12 110638401 110638557 -10618973 + RSINE1 SINE B4 6 165 0 1 1429 253 261 82 93 chr12 110638557 110638583 -10618947 + B2_Mm1a SINE B2 5 184 -9 1 1429 563 338 70 20 chr12 110638610 110638901 -10618629 + MER33 DNA MER1_type 10 323 -1 1 1429 383 335 91 35 chr12 110639677 110639909 -10617621 - MER33 DNA MER1_type -76 248 4 1 1429 1245 95 9 8 chr12 110644658 110645124 -10612406 + (TTTC)n Simple_repeat Simple_repeat 1 466 0 1 1429 354 212 48 48 chr12 110645126 110645210 -10612320 - ID_B1 SINE B4 0 224 141 1 1429 600 53 0 0 chr12 110648616 110648692 -10608838 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1429 181 162 108 0 chr12 110648859 110648896 -10608634 - MIR SINE MIR -107 155 115 1 1429 180 250 25 0 chr12 110651396 110651436 -10606094 + MIRb SINE MIR 28 68 -200 1 1429 282 131 11 35 chr12 110652698 110652785 -10604745 + A-rich Low_complexity Low_complexity 2 86 0 1 1429 245 273 65 43 chr12 110652791 110652883 -10604647 + RSINE1 SINE B4 2 95 -70 1 1429 214 116 68 23 chr12 110652883 110652927 -10604603 + GA-rich Low_complexity Low_complexity 5 50 0 1 1429 232 328 17 46 chr12 110656653 110656829 -10600701 - MIR SINE MIR -46 222 40 1 1429 995 268 29 22 chr12 110657498 110657773 -10599757 - B4A SINE B4 -7 285 9 1 1429 468 93 0 0 chr12 110657825 110657900 -10599630 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 1429 588 291 137 5 chr12 110657900 110658097 -10599433 - ID_B1 SINE B4 -1 223 1 1 1429 247 326 51 18 chr12 110658225 110658417 -10599113 + MIRb SINE MIR 59 252 -10 1 1429 300 292 20 20 chr12 110659232 110659330 -10598200 + L2 LINE L2 2280 2377 -1042 1 1429 2522 142 166 93 chr12 110659826 110660361 -10597169 - RMER15 LTR ERVL -1 574 1 1 1429 200 292 31 0 chr12 110661526 110661591 -10595939 - L2b LINE L2 -1 3374 3308 1 1429 370 278 7 40 chr12 110661627 110661777 -10595753 + CT-rich Low_complexity Low_complexity 2 146 0 1 1429 295 287 34 28 chr12 110661895 110662074 -10595456 + C-rich Low_complexity Low_complexity 1 180 0 1 1429 243 0 0 0 chr12 110662208 110662235 -10595295 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 1 1429 186 236 18 18 chr12 110662536 110662592 -10594938 - MIR SINE MIR -132 130 75 1 1429 718 236 78 29 chr12 110663523 110663728 -10593802 - ID_B1 SINE B4 -7 217 3 1 1429 315 0 0 0 chr12 110664147 110664182 -10593348 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 1429 551 303 74 20 chr12 110664814 110665156 -10592374 - L1MB7 LINE L1 -154 6030 5635 1 1429 941 203 83 0 chr12 110665360 110665552 -10591978 + B3 SINE B2 2 209 -7 1 1429 315 71 0 0 chr12 110665686 110665728 -10591802 + (GAA)n Simple_repeat Simple_repeat 2 43 0 1 1429 325 366 35 50 chr12 110665734 110665875 -10591655 + RSINE1 SINE B4 3 141 -24 1 1429 182 150 25 0 chr12 110665889 110665929 -10591601 + (CAAT)n Simple_repeat Simple_repeat 3 43 0 1 1429 221 140 0 23 chr12 110665980 110666024 -10591506 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1 1429 264 77 0 0 chr12 110666910 110666949 -10590581 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1429 481 298 13 0 chr12 110666950 110667101 -10590429 - L1MB7 LINE L1 -6 6178 6026 1 1429 254 330 42 25 chr12 110667549 110667667 -10589863 + MLT1D LTR MaLR 287 406 -99 1 1429 262 266 16 0 chr12 110668415 110668479 -10589051 + ID4_ SINE ID 4 68 -15 1 1429 594 215 16 0 chr12 110668558 110668679 -10588851 - B1_Mur3 SINE Alu -25 124 2 2 1429 465 50 0 0 chr12 110668679 110668739 -10588791 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1429 414 338 67 8 chr12 110668745 110668879 -10588651 - RSINE1 SINE B4 -22 143 2 2 1429 541 255 0 0 chr12 110668935 110669041 -10588489 + PB1D9 SINE Alu 5 110 -10 2 1429 1180 28 16 33 chr12 110669052 110669235 -10588295 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1429 1336 6 29 0 chr12 110669248 110669421 -10588109 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 2 1429 834 152 28 5 chr12 110669851 110670287 -10587243 + (TG)n Simple_repeat Simple_repeat 1 446 0 2 1429 785 116 15 35 chr12 110670330 110670593 -10586937 + (TG)n Simple_repeat Simple_repeat 1 257 0 2 1429 541 338 27 14 chr12 110670710 110670929 -10586601 - L4 LINE RTE -962 1067 846 2 1429 473 0 18 0 chr12 110671252 110671309 -10586221 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1429 760 250 16 58 chr12 110671334 110671525 -10586005 - B4 SINE B4 -99 193 11 2 1429 303 28 0 0 chr12 110673175 110673211 -10584319 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1429 703 172 157 51 chr12 110673340 110673518 -10584012 + B3A SINE B2 2 198 0 2 1429 227 350 0 71 chr12 110673529 110673655 -10583875 - PB1D10 SINE Alu 0 117 1 2 1429 1154 73 0 41 chr12 110673672 110673843 -10583687 + B2_Mm2 SINE B2 1 164 -31 2 1429 1176 82 0 0 chr12 110673873 110674020 -10583510 - B1_Mus2 SINE Alu 0 147 1 2 1429 21 0 0 0 chr12 110674039 110674060 -10583470 + AT_rich Low_complexity Low_complexity 1 21 0 2 1429 642 26 0 0 chr12 110676585 110676661 -10580869 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 2 1429 288 0 0 0 chr12 110681070 110681102 -10576428 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1429 369 262 186 70 chr12 110681198 110681354 -10576176 + B3 SINE B2 19 192 -24 2 1429 256 350 8 8 chr12 110681572 110681690 -10575840 + LTR33 LTR ERVL 393 510 -5 2 1429 329 315 106 30 chr12 110682737 110683002 -10574528 + RMER12 LTR ERVK 704 988 -334 2 1429 288 221 0 0 chr12 110683004 110683081 -10574449 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 1429 558 286 48 0 chr12 110683180 110683327 -10574203 - RSINE1 SINE B4 -10 155 2 2 1429 252 140 80 0 chr12 110683367 110683417 -10574113 - B1F SINE Alu 0 149 96 2 1429 218 342 19 19 chr12 110683566 110683710 -10573820 + MIRc SINE MIR 57 203 -73 2 1429 216 0 0 0 chr12 110685210 110685234 -10572296 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1429 640 264 24 81 chr12 110685378 110685588 -10571942 - B3A SINE B2 0 198 1 2 1429 1228 47 0 26 chr12 110685929 110686081 -10571449 - B1_Mus1 SINE Alu 0 148 1 2 1429 228 67 0 0 chr12 110687334 110687364 -10570166 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1429 433 259 235 28 chr12 110689795 110689974 -10567556 - B3 SINE B2 0 216 1 2 1429 231 206 41 0 chr12 110689994 110690067 -10567463 + (TTTA)n Simple_repeat Simple_repeat 2 77 0 2 1429 293 62 0 20 chr12 110690072 110690121 -10567409 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1429 385 226 85 38 chr12 110690122 110690228 -10567302 - RSINE1 SINE B4 -34 131 21 2 1429 298 164 131 0 chr12 110690309 110690370 -10567160 - RSINE1 SINE B4 -94 71 3 2 1429 333 0 0 0 chr12 110690522 110690559 -10566971 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1429 303 121 0 0 chr12 110690608 110690666 -10566864 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1429 30 105 0 0 chr12 110691548 110691662 -10565868 + GC_rich Low_complexity Low_complexity 1 114 0 2 1429 203 171 0 68 chr12 110693387 110693431 -10564099 + G-rich Low_complexity Low_complexity 3 43 0 2 1429 209 170 0 60 chr12 110693850 110693900 -10563630 + C-rich Low_complexity Low_complexity 5 51 0 2 1429 363 44 0 0 chr12 110695005 110695050 -10562480 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1429 180 0 0 0 chr12 110695200 110695220 -10562310 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1429 198 0 0 0 chr12 110695482 110695504 -10562026 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1429 22 0 0 0 chr12 110696597 110696619 -10560911 + AT_rich Low_complexity Low_complexity 1 22 0 2 1429 198 103 0 0 chr12 110697482 110697511 -10560019 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2 1429 279 323 25 75 chr12 110699124 110699325 -10558205 + MIR3 SINE MIR 2 192 -16 2 1429 209 30 61 0 chr12 110699934 110699967 -10557563 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1429 234 234 0 61 chr12 110700446 110700528 -10557002 + CT-rich Low_complexity Low_complexity 4 80 0 2 1429 198 0 0 0 chr12 110703353 110703375 -10554155 + (CAGC)n Simple_repeat Simple_repeat 4 25 0 2 1429 270 194 0 46 chr12 110703964 110704029 -10553501 + B3 SINE B2 155 216 0 2 1429 889 242 28 14 chr12 110704141 110704359 -10553171 + ID_B1 SINE B4 3 223 -1 2 1429 258 269 16 107 chr12 110704437 110704558 -10552972 + MT2B LTR ERVL 155 264 -337 2 1429 612 171 13 79 chr12 110704452 110704561 -10552969 + B1_Mur4 SINE Alu 9 110 -40 2 1429 1041 69 54 0 chr12 110704561 110704691 -10552839 + B1_Mus1 SINE Alu 2 138 -10 2 1429 234 0 0 0 chr12 110704691 110704717 -10552813 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1429 612 171 13 79 chr12 110704717 110704758 -10552772 + B1_Mur4 SINE Alu 111 149 -1 2 1429 625 263 23 0 chr12 110704967 110705100 -10552430 + B1_Mur1 SINE Alu 1 136 -13 2 1429 273 57 0 0 chr12 110705100 110705135 -10552395 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1429 436 286 42 0 chr12 110705292 110705411 -10552119 + MER20 DNA MER1_type 35 158 -61 2 1429 1234 61 0 0 chr12 110705607 110705754 -10551776 + B1_Mus2 SINE Alu 1 147 0 2 1429 1083 172 48 0 chr12 110705920 110706106 -10551424 + B2_Mm2 SINE B2 1 195 0 2 1429 1280 114 5 40 chr12 110706106 110706265 -10551265 + B2_Mm2 SINE B2 2 161 -34 2 1429 270 0 0 0 chr12 110706265 110706295 -10551235 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2 1429 1280 114 5 40 chr12 110706295 110706336 -10551194 + B2_Mm2 SINE B2 162 195 0 2 1429 461 311 81 75 chr12 110706669 110706989 -10550541 + ERVL-int LTR ERVL 1964 2285 -3429 2 1429 258 105 0 0 chr12 110707198 110707236 -10550294 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1429 476 301 227 0 chr12 110707260 110707463 -10550067 - B4 SINE B4 -43 249 1 2 1429 661 349 95 57 chr12 110707518 110708148 -10549382 + ERVL-int LTR ERVL 2241 2894 -2773 2 1429 259 299 20 20 chr12 110708163 110708262 -10549268 + B1F SINE Alu 14 112 -37 2 1429 418 136 0 106 chr12 110708263 110708319 -10549211 + A-rich Low_complexity Low_complexity 1 44 0 2 1429 1197 47 0 39 chr12 110708319 110708473 -10549057 + B1_Mus1 SINE Alu 1 148 0 2 1429 418 136 0 106 chr12 110708473 110708539 -10548991 + A-rich Low_complexity Low_complexity 45 110 0 2 1429 727 237 0 14 chr12 110708608 110708886 -10548644 + GA-rich Low_complexity Low_complexity 1 273 0 2 1429 360 298 101 44 chr12 110708921 110709079 -10548451 + ERVL-int LTR ERVL 3009 3175 -2539 2 1429 840 347 96 50 chr12 110709186 110710003 -10547527 + ERVL-int LTR ERVL 3377 4230 -1527 2 1429 301 297 84 48 chr12 110710299 110710465 -10547065 + ERVL-int LTR ERVL 4893 5064 -603 2 1429 468 48 0 0 chr12 110710541 110710604 -10546926 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1429 740 272 14 59 chr12 110710765 110710984 -10546546 + B3 SINE B2 3 211 -5 2 1429 434 340 70 21 chr12 110711680 110711923 -10545607 + MLT2F LTR ERVL 349 603 -60 2 1429 561 52 0 0 chr12 110713753 110713830 -10543700 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1429 518 171 16 119 chr12 110713830 110713956 -10543574 - RSINE1 SINE B4 -43 122 10 2 1429 452 307 9 0 chr12 110714061 110714175 -10543355 + PB1D10 SINE Alu 3 117 0 2 1429 326 309 120 16 chr12 110714328 110714512 -10543018 - L1M4 LINE L1 -5305 1237 1035 2 1429 367 258 37 23 chr12 110714619 110714918 -10542612 + CT-rich Low_complexity Low_complexity 1 303 0 2 1429 391 299 16 54 chr12 110714934 110715118 -10542412 + CT-rich Low_complexity Low_complexity 2 178 0 2 1429 463 308 72 45 chr12 110715140 110715405 -10542125 - L1MC4 LINE L1 -4986 1229 958 2 1429 325 218 32 8 chr12 110715406 110715531 -10541999 + CT-rich Low_complexity Low_complexity 3 130 0 2 1429 410 320 17 33 chr12 110715557 110715819 -10541711 + CT-rich Low_complexity Low_complexity 1 257 0 2 1429 259 240 15 30 chr12 110715833 110715966 -10541564 + CT-rich Low_complexity Low_complexity 3 133 0 2 1429 490 263 22 33 chr12 110715998 110716179 -10541351 + CT-rich Low_complexity Low_complexity 2 180 0 2 1429 203 202 35 12 chr12 110716196 110716281 -10541249 + CT-rich Low_complexity Low_complexity 1 87 0 2 1429 294 239 24 24 chr12 110716343 110716720 -10540810 + CT-rich Low_complexity Low_complexity 1 377 0 2 1429 481 339 0 33 chr12 110716738 110716921 -10540609 + CT-rich Low_complexity Low_complexity 1 177 0 2 1429 265 258 12 0 chr12 110716933 110717096 -10540434 + CT-rich Low_complexity Low_complexity 1 165 0 2 1429 346 325 24 54 chr12 110717160 110717326 -10540204 - MLT1A0 LTR MaLR -204 161 1 2 1429 390 260 50 0 chr12 110717412 110717512 -10540018 + PB1D10 SINE Alu 13 117 0 2 1429 939 70 0 0 chr12 110717522 110717651 -10539879 + B1_Mus1 SINE Alu 20 148 0 2 1429 219 157 0 0 chr12 110717651 110717702 -10539828 + A-rich Low_complexity Low_complexity 1 51 0 2 1429 1664 26 0 15 chr12 110717725 110717920 -10539610 + B2_Mm1a SINE B2 2 193 0 2 1429 404 331 36 7 chr12 110717960 110718263 -10539267 + L1M4b LINE L1 2227 2537 -4550 2 1429 364 326 61 49 chr12 110718702 110718947 -10538583 - L1MEf LINE L1 -4032 2168 1921 2 1429 773 200 0 7 chr12 110718978 110719124 -10538406 - B1_Mus1 SINE Alu -1 147 3 2 1429 1042 106 42 0 chr12 110719147 110719289 -10538241 - B1_Mus1 SINE Alu 0 148 1 2 1429 415 246 45 0 chr12 110719295 110719405 -10538125 - B1_Mur1 SINE Alu -2 147 33 2 1429 249 175 0 69 chr12 110719411 110719475 -10538055 + PB1D10 SINE Alu 65 149 0 2 1429 842 275 19 5 chr12 110719480 110719692 -10537838 + B3 SINE B2 1 215 -1 2 1429 334 233 46 11 chr12 110719754 110719841 -10537689 + B1_Mus1 SINE Alu 13 102 -46 2 1429 1186 199 10 0 chr12 110719841 110720042 -10537488 + B3 SINE B2 3 205 -11 2 1429 28 29 0 0 chr12 110720270 110720305 -10537225 + AT_rich Low_complexity Low_complexity 1 35 0 2 1429 392 292 51 7 chr12 110720497 110720635 -10536895 + MLT1A1 LTR MaLR 252 395 -13 2 1429 211 246 0 55 chr12 110720943 110721016 -10536514 + A-rich Low_complexity Low_complexity 2 70 0 2 1429 196 200 16 16 chr12 110721018 110721079 -10536451 + GA-rich Low_complexity Low_complexity 5 65 0 2 1429 744 161 19 6 chr12 110721101 110721263 -10536267 + GA-rich Low_complexity Low_complexity 1 164 0 2 1429 646 231 14 7 chr12 110721276 110721424 -10536106 + B1F2 SINE Alu 1 149 0 2 1429 226 337 36 0 chr12 110721440 110721523 -10536007 + L1MD LINE L1 4031 4116 -2030 2 1429 3388 253 109 9 chr12 110721636 110722637 -10534893 - Lx8 LINE L1 -10 7463 6363 2 1429 623 299 64 27 chr12 110722637 110722857 -10534673 - B4A SINE B4 -59 233 6 2 1429 1016 60 23 0 chr12 110722934 110723067 -10534463 + B1_Mus2 SINE Alu 2 137 -10 2 1429 519 315 7 7 chr12 110723104 110723254 -10534276 + RSINE1 SINE B4 3 152 -13 3 1429 1906 236 36 27 chr12 110723304 110723862 -10533668 + L1M4 LINE L1 4182 4744 -1402 3 1429 769 218 74 57 chr12 110723963 110724192 -10533338 + MTD LTR MaLR 1 233 -186 3 1429 531 282 0 0 chr12 110724251 110724375 -10533155 - B1_Mur1 SINE Alu -21 128 5 3 1429 24 0 0 0 chr12 110724388 110724412 -10533118 + AT_rich Low_complexity Low_complexity 1 24 0 3 1429 327 259 106 43 chr12 110724425 110724566 -10532964 - RSINE1 SINE B4 -15 150 1 3 1429 286 298 122 25 chr12 110724585 110724781 -10532749 + L1M4 LINE L1 4869 5083 -1063 3 1429 858 214 88 5 chr12 110724830 110725023 -10532507 + B3 SINE B2 5 213 -3 3 1429 572 262 0 33 chr12 110725036 110725169 -10532361 + B1_Mur1 SINE Alu 5 137 -12 3 1429 252 0 0 0 chr12 110725169 110725197 -10532333 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 3 1429 572 262 0 33 chr12 110725197 110725213 -10532317 + B1_Mur1 SINE Alu 138 149 0 3 1429 760 191 92 12 chr12 110725322 110725486 -10532044 + B3A SINE B2 6 182 -16 3 1429 213 211 0 0 chr12 110725486 110725538 -10531992 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1429 419 316 18 23 chr12 110725571 110725813 -10531717 + B4A SINE B4 2 291 -1 3 1429 553 294 74 20 chr12 110725898 110726170 -10531360 + L1M4 LINE L1 5164 5441 -743 3 1429 781 221 82 5 chr12 110726173 110726369 -10531161 + B3 SINE B2 5 215 -1 3 1429 26 0 0 0 chr12 110726372 110726398 -10531132 + AT_rich Low_complexity Low_complexity 1 26 0 3 1429 1030 96 0 7 chr12 110726406 110726543 -10530987 + B1_Mus1 SINE Alu 1 137 -11 3 1429 234 0 0 0 chr12 110726543 110726569 -10530961 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1429 317 226 110 28 chr12 110726581 110726690 -10530840 + L1M4 LINE L1 5427 5544 -634 3 1429 628 200 43 29 chr12 110726943 110727082 -10530448 + B1_Mur1 SINE Alu 2 142 -7 3 1429 247 281 33 22 chr12 110727736 110727827 -10529703 + MLT2B4 LTR ERVL 101 192 -364 3 1429 402 294 39 8 chr12 110728014 110728141 -10529389 - ERVL-B4-int LTR ERVL -1385 4329 4199 3 1429 771 269 103 15 chr12 110728326 110728587 -10528943 + B4A SINE B4 1 284 -8 3 1429 258 182 0 18 chr12 110729586 110729642 -10527888 + MLT1G LTR MaLR 340 394 -197 3 1429 449 345 39 26 chr12 110729665 110729897 -10527633 - HERV16-int LTR ERVL -4494 502 268 3 1429 234 301 69 54 chr12 110730125 110730255 -10527275 - LTR16A LTR ERVL 0 451 320 3 1429 1657 16 0 0 chr12 110731149 110731342 -10526188 + B2_Mm1a SINE B2 1 193 0 3 1429 584 315 0 18 chr12 110731774 110731939 -10525591 + RSINE1 SINE B4 4 165 0 3 1429 227 133 0 22 chr12 110731959 110732005 -10525525 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 1429 858 123 14 42 chr12 110732008 110732152 -10525378 - B1_Mus1 SINE Alu -8 141 2 3 1429 1108 185 9 35 chr12 110732874 110733104 -10524426 + URR1B DNA MER1_type 1 224 -1 3 1429 189 107 0 0 chr12 110733807 110733835 -10523695 + (CGTG)n Simple_repeat Simple_repeat 3 30 0 3 1429 266 0 29 0 chr12 110734534 110734568 -10522962 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1429 185 336 48 24 chr12 110734867 110734992 -10522538 - L2 LINE L2 -408 3011 2884 3 1429 254 346 36 29 chr12 110735198 110735338 -10522192 - MER34 LTR ERV1 -6 536 396 3 1429 403 237 0 0 chr12 110735647 110735723 -10521807 + ID_B1 SINE B4 146 221 -3 3 1429 1184 20 7 0 chr12 110736222 110736368 -10521162 + B1_Mus1 SINE Alu 2 148 0 3 1429 201 158 0 0 chr12 110736370 110736408 -10521122 + A-rich Low_complexity Low_complexity 1 38 0 3 1429 973 73 73 0 chr12 110736813 110736949 -10520581 - B1_Mus1 SINE Alu 0 148 3 3 1429 210 105 0 0 chr12 110736954 110736992 -10520538 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1429 324 308 83 23 chr12 110737087 110737220 -10520310 + B1_Mur2 SINE Alu 1 141 -8 3 1429 291 0 59 39 chr12 110737293 110737344 -10520186 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 3 1429 1190 41 0 7 chr12 110737345 110737492 -10520038 - B1_Mm SINE Alu 0 147 2 3 1429 1391 67 0 6 chr12 110737541 110737722 -10519808 + B2_Mm2 SINE B2 2 181 -14 3 1429 898 98 14 7 chr12 110737723 110737867 -10519663 + (GAAA)n Simple_repeat Simple_repeat 2 146 0 3 1429 264 59 0 0 chr12 110737989 110738023 -10519507 + (CTGGGG)n Simple_repeat Simple_repeat 2 35 0 3 1429 291 271 23 23 chr12 110739811 110739898 -10517632 + BC1_Mm scRNA scRNA 6 92 -60 3 1429 372 171 0 0 chr12 110739985 110740067 -10517463 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1429 458 212 182 0 chr12 110740068 110740205 -10517325 - RSINE1 SINE B4 -1 164 3 3 1429 180 0 0 0 chr12 110740282 110740302 -10517228 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1429 1176 48 0 0 chr12 110744620 110744767 -10512763 + B1_Mus2 SINE Alu 1 147 0 3 1429 43 20 0 0 chr12 110745428 110745478 -10512052 + AT_rich Low_complexity Low_complexity 1 50 0 3 1429 324 0 0 0 chr12 110746093 110746129 -10511401 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1429 352 183 14 27 chr12 110746286 110746359 -10511171 - B1_Mur3 SINE Alu -76 73 2 3 1429 334 329 38 32 chr12 110746425 110746582 -10510948 - L1M3 LINE L1 -433 5750 5593 3 1429 208 329 0 27 chr12 110747041 110747116 -10510414 - L2b LINE L2 -1 3374 3302 3 1429 819 309 24 52 chr12 110747869 110748251 -10509279 - Charlie13b DNA Charlie -92 420 50 3 1429 211 380 19 0 chr12 110754345 110754453 -10503077 - MIRb SINE MIR -125 143 34 3 178 472 270 118 22 chr12 110755797 110755975 -10501555 + B4 SINE B4 3 197 -95 3 1430 378 0 0 0 chr12 110755990 110756032 -10501498 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1430 250 346 102 41 chr12 110756121 110756365 -10501165 + L1MEc LINE L1 172 430 -5970 3 1430 333 0 0 0 chr12 110756376 110756413 -10501117 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 3 1430 696 150 0 0 chr12 110756414 110756574 -10500956 + (TC)n Simple_repeat Simple_repeat 1 160 0 3 1430 288 0 0 0 chr12 110756574 110756606 -10500924 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1430 262 279 0 12 chr12 110756631 110756711 -10500819 + ID4_ SINE ID 5 83 0 3 1430 1084 329 144 32 chr12 110756811 110757888 -10499642 + L1MEc LINE L1 554 1751 -4649 3 1430 349 233 137 32 chr12 110758035 110758159 -10499371 + B1_Mur2 SINE Alu 7 143 -6 3 1430 503 253 123 28 chr12 110758159 110758338 -10499192 - B3A SINE B2 -1 197 2 3 1430 463 358 53 5 chr12 110758482 110758670 -10498860 + L1MEc LINE L1 2110 2306 -4094 3 1430 316 337 196 9 chr12 110758892 110759233 -10498297 + L1MEc LINE L1 2504 2908 -3411 3 1430 659 12 12 0 chr12 110759335 110759415 -10498115 + (TTTC)n Simple_repeat Simple_repeat 3 83 0 3 1430 329 269 0 0 chr12 110759415 110759502 -10498028 - B1F SINE Alu -15 105 19 3 1430 318 284 20 7 chr12 110759616 110759784 -10497746 + L1M5 LINE L1 3057 3227 -2919 3 1430 604 194 28 14 chr12 110759789 110759930 -10497600 + B1F SINE Alu 2 144 -5 3 1430 543 288 27 85 chr12 110760438 110760662 -10496868 + B3 SINE B2 1 211 -5 3 1430 467 127 0 0 chr12 110760700 110760771 -10496759 + B3 SINE B2 1 71 -145 3 1430 433 110 22 0 chr12 110760772 110760863 -10496667 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1430 274 147 7 59 chr12 110760920 110761001 -10496529 + PB1D10 SINE Alu 44 120 0 3 1430 243 231 91 11 chr12 110761199 110761280 -10496250 - B1F SINE Alu -35 114 32 3 1430 216 0 0 0 chr12 110762276 110762300 -10495230 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1430 297 75 0 0 chr12 110763180 110763220 -10494310 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1430 1168 61 0 0 chr12 110763391 110763539 -10493991 + B1_Mus1 SINE Alu 1 148 0 3 1430 765 109 7 45 chr12 110763635 110763789 -10493741 + RMER17B LTR ERVK 316 463 -495 3 1430 25 0 0 0 chr12 110763789 110763814 -10493716 + AT_rich Low_complexity Low_complexity 1 25 0 3 1430 270 0 0 0 chr12 110769293 110769323 -10488207 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1430 633 274 41 18 chr12 110770031 110770202 -10487328 + RMER30 DNA MER1_type 21 195 -7 3 1430 273 361 0 36 chr12 110772233 110772345 -10485185 - MIR SINE MIR -44 218 111 3 1430 591 112 0 0 chr12 110772479 110772577 -10484953 + (TA)n Simple_repeat Simple_repeat 1 98 0 3 1430 537 16 0 0 chr12 110773354 110773416 -10484114 + (GGA)n Simple_repeat Simple_repeat 2 63 0 3 1430 291 294 315 38 chr12 110774184 110774368 -10483162 - B4A SINE B4 -56 236 2 3 1430 435 308 90 15 chr12 110774411 110774612 -10482918 - B3 SINE B2 0 216 1 3 1430 346 228 168 0 chr12 110775899 110776000 -10481530 - PB1D9 SINE Alu 0 120 3 3 1430 248 329 63 0 chr12 110776079 110776158 -10481372 + B1F SINE Alu 36 119 -30 3 1430 326 335 2 14 chr12 110776907 110777068 -10480462 - MIR3 SINE MIR -9 199 40 3 1430 275 305 12 0 chr12 110781374 110781456 -10476074 + CT-rich Low_complexity Low_complexity 2 84 0 3 1430 248 237 5 58 chr12 110781456 110781644 -10475886 + C-rich Low_complexity Low_complexity 3 180 0 3 1430 489 290 0 43 chr12 110781657 110781841 -10475689 + CT-rich Low_complexity Low_complexity 4 179 0 3 1430 180 0 0 0 chr12 110782634 110782654 -10474876 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 3 1430 251 189 57 0 chr12 110782745 110782798 -10474732 + MIR SINE MIR 139 194 -68 3 1430 26 0 0 0 chr12 110783117 110783143 -10474387 + AT_rich Low_complexity Low_complexity 1 26 0 3 1430 219 246 78 47 chr12 110783463 110783527 -10474003 + MIRm SINE MIR 90 155 -121 3 1430 210 171 0 0 chr12 110783529 110783570 -10473960 + A-rich Low_complexity Low_complexity 1 41 0 3 1430 205 162 0 0 chr12 110783572 110783609 -10473921 + G-rich Low_complexity Low_complexity 1 37 0 3 1430 251 313 0 46 chr12 110783619 110783706 -10473824 + MIRc SINE MIR 166 248 -20 3 1430 243 0 0 0 chr12 110783826 110783853 -10473677 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 1430 271 179 22 143 chr12 110783853 110783944 -10473586 - L2c LINE L2 -3 3384 3305 3 1430 284 108 0 44 chr12 110784026 110784094 -10473436 + A-rich Low_complexity Low_complexity 1 65 0 4 1430 222 62 0 0 chr12 110789087 110789119 -10468411 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1430 279 157 0 0 chr12 110791100 110791151 -10466379 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 4 1430 218 288 0 24 chr12 110791153 110791235 -10466295 - RSINE1 SINE B4 -1 164 85 4 1430 423 0 0 0 chr12 110791738 110791785 -10465745 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1430 252 0 0 0 chr12 110792084 110792112 -10465418 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1430 190 217 22 0 chr12 110792401 110792447 -10465083 + MIRc SINE MIR 114 160 -108 4 1430 860 241 46 32 chr12 110795339 110795558 -10461972 + ID_B1 SINE B4 1 222 -2 4 1430 186 103 0 0 chr12 110795888 110795917 -10461613 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1430 198 0 0 0 chr12 110797869 110797891 -10459639 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1430 242 307 15 0 chr12 110798859 110798949 -10458581 + ID4 SINE ID 8 99 -53 4 1430 246 309 21 0 chr12 110799682 110799776 -10457754 + GA-rich Low_complexity Low_complexity 4 99 0 4 1430 21 0 0 0 chr12 110802863 110802884 -10454646 + AT_rich Low_complexity Low_complexity 1 21 0 4 1430 187 338 0 14 chr12 110803218 110803290 -10454240 + L2c LINE L2 3270 3340 -47 4 1430 816 107 0 0 chr12 110803310 110803431 -10454099 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 1430 321 118 0 0 chr12 110803492 110803543 -10453987 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 4 1430 258 273 11 40 chr12 110803733 110803855 -10453675 - L1M LINE L1 -2466 5416 5300 4 1430 471 160 0 0 chr12 110804533 110804627 -10452903 + (TCCA)n Simple_repeat Simple_repeat 4 97 0 4 1430 250 275 75 0 chr12 110806588 110806668 -10450862 + MIRc SINE MIR 112 197 -71 4 1430 181 341 109 22 chr12 110808744 110808882 -10448648 + MIRc SINE MIR 48 197 -71 4 1430 248 214 193 55 chr12 110809810 110809919 -10447611 + MIR SINE MIR 126 249 -13 4 1430 294 281 12 24 chr12 110810769 110810945 -10446585 + CT-rich Low_complexity Low_complexity 1 173 0 4 1430 218 278 27 14 chr12 110815039 110815112 -10442418 + ID4 SINE ID 2 75 -8 4 1430 297 0 0 0 chr12 110816293 110816326 -10441204 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1430 363 70 76 25 chr12 110816770 110816888 -10440642 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 1430 280 229 0 28 chr12 110817871 110817943 -10439587 + B4 SINE B4 8 77 -215 4 1430 245 220 0 17 chr12 110818468 110818528 -10439002 - L2b LINE L2 -1 3374 3316 4 1430 234 0 0 0 chr12 110819197 110819223 -10438307 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1430 279 0 0 0 chr12 110820380 110820411 -10437119 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1430 384 241 34 59 chr12 110823298 110823417 -10434113 + PB1D10 SINE Alu 1 116 -1 4 1430 295 260 0 50 chr12 110823705 110823806 -10433724 + CT-rich Low_complexity Low_complexity 4 99 0 4 1430 201 203 15 59 chr12 110824949 110825017 -10432513 + CT-rich Low_complexity Low_complexity 6 70 0 4 1430 200 269 13 13 chr12 110827254 110827333 -10430197 + (CATCC)n Simple_repeat Simple_repeat 5 83 0 4 1430 1017 150 0 0 chr12 110829312 110829492 -10428038 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1430 657 217 0 0 chr12 110829526 110829701 -10427829 + CT-rich Low_complexity Low_complexity 1 175 0 4 1430 203 319 0 0 chr12 110833416 110833485 -10424045 + C-rich Low_complexity Low_complexity 5 73 0 4 1430 243 0 0 0 chr12 110835306 110835333 -10422197 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1430 21 0 0 0 chr12 110835497 110835518 -10422012 + AT_rich Low_complexity Low_complexity 1 21 0 4 1430 450 127 0 0 chr12 110836749 110836820 -10420710 + (A)n Simple_repeat Simple_repeat 1 71 0 4 1430 216 0 0 0 chr12 110839006 110839030 -10418500 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1430 221 0 0 33 chr12 110840392 110840422 -10417108 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1430 25 75 0 0 chr12 110842887 110842940 -10414590 + AT_rich Low_complexity Low_complexity 1 53 0 4 1430 215 236 0 0 chr12 110843896 110843951 -10413579 + A-rich Low_complexity Low_complexity 1 55 0 4 1430 233 57 29 0 chr12 110844038 110844073 -10413457 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1430 336 161 0 0 chr12 110846248 110846310 -10411220 + (CAGCC)n Simple_repeat Simple_repeat 4 65 0 4 1430 186 43 0 0 chr12 110847164 110847187 -10410343 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1430 270 56 0 0 chr12 110848862 110848898 -10408632 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1430 241 329 95 12 chr12 110849072 110849241 -10408289 + MIRb SINE MIR 64 246 -22 4 1430 402 151 0 0 chr12 110849720 110849793 -10407737 + (CGGT)n Simple_repeat Simple_repeat 3 75 0 4 1430 197 347 100 20 chr12 110849964 110850114 -10407416 - MIR SINE MIR -102 166 5 4 1430 398 69 17 0 chr12 110851104 110851162 -10406368 + (CGGG)n Simple_repeat Simple_repeat 4 62 0 4 1430 216 97 0 0 chr12 110851594 110851625 -10405905 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 4 1430 276 263 135 10 chr12 110853210 110853306 -10404224 - MIRb SINE MIR -120 148 41 4 1430 679 199 37 0 chr12 110854484 110854620 -10402910 - B1_Mur4 SINE Alu -8 142 2 4 1430 249 260 164 0 chr12 110854649 110854722 -10402808 + B3A SINE B2 1 85 -113 4 1430 621 258 189 16 chr12 110854845 110855030 -10402500 + ID_B1 SINE B4 1 217 -7 4 1430 302 224 0 0 chr12 110855136 110855203 -10402327 + MIRm SINE MIR 67 133 -143 4 1430 201 39 0 0 chr12 110855718 110855744 -10401786 + (C)n Simple_repeat Simple_repeat 1 26 0 4 1430 596 208 191 32 chr12 110855848 110856037 -10401493 + ID_B1 SINE B4 1 219 -5 4 1430 234 0 0 0 chr12 110856120 110856146 -10401384 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1430 204 40 0 0 chr12 110856370 110856395 -10401135 + (CGGT)n Simple_repeat Simple_repeat 4 28 0 4 1430 276 30 0 0 chr12 110856566 110856599 -10400931 + (CTG)n Simple_repeat Simple_repeat 3 35 0 4 1430 219 88 0 0 chr12 110858372 110858406 -10399124 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 4 1430 708 316 62 7 chr12 110858851 110859125 -10398405 + B4 SINE B4 4 292 0 4 1430 745 279 16 11 chr12 110859691 110859876 -10397654 - B3 SINE B2 -8 208 23 4 1430 476 284 81 23 chr12 110860012 110860185 -10397345 + MER54A LTR ERVL 714 896 -5 4 1430 362 221 232 24 chr12 110860663 110860788 -10396742 + B3A SINE B2 2 152 -46 4 1430 396 0 0 0 chr12 110860797 110860841 -10396689 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1430 28 0 0 0 chr12 110861125 110861153 -10396377 + AT_rich Low_complexity Low_complexity 1 28 0 4 1430 227 354 0 0 chr12 110861564 110861643 -10395887 + ID4_ SINE ID 2 80 -3 4 1430 217 329 35 47 chr12 110862122 110862208 -10395322 + PB1D10 SINE Alu 7 91 -26 4 1430 201 94 0 0 chr12 110862250 110862282 -10395248 + (AGGGGG)n Simple_repeat Simple_repeat 6 37 0 4 1430 307 255 10 96 chr12 110862714 110862818 -10394712 + MER99 DNA hAT? 264 358 -473 4 1430 22 35 0 0 chr12 110862942 110862971 -10394559 + AT_rich Low_complexity Low_complexity 1 29 0 4 1430 384 282 39 0 chr12 110863511 110863614 -10393916 + PB1D10 SINE Alu 10 116 -1 4 1430 206 235 0 0 chr12 110863626 110863677 -10393853 + A-rich Low_complexity Low_complexity 1 51 0 4 1430 247 299 81 7 chr12 110863709 110863857 -10393673 + L1MA8 LINE L1 6129 6287 -4 4 1430 339 44 0 0 chr12 110864625 110864670 -10392860 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 4 1430 689 69 0 10 chr12 110864673 110864775 -10392755 - B1_Mus2 SINE Alu -4 143 43 4 1430 279 0 0 0 chr12 110865053 110865084 -10392446 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1430 255 301 82 75 chr12 110866767 110866914 -10390616 - RSINE1 SINE B4 -15 150 3 4 1430 249 289 166 6 chr12 110868266 110868443 -10389087 - MLT1F1 LTR MaLR -137 411 195 4 1430 576 241 7 29 chr12 110869365 110869502 -10388028 + RSINE1 SINE B4 4 137 -28 4 1430 504 32 0 0 chr12 110869519 110869581 -10387949 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1430 21 36 0 0 chr12 110869715 110869743 -10387787 + AT_rich Low_complexity Low_complexity 1 28 0 4 1430 22 0 0 0 chr12 110870229 110870251 -10387279 + AT_rich Low_complexity Low_complexity 1 22 0 4 1430 623 197 66 71 chr12 110870337 110870534 -10386996 - L1_Mur3 LINE L1 -7122 590 395 4 1430 385 204 39 48 chr12 110870604 110870707 -10386823 - L1MC LINE L1 -2972 3174 3073 4 1430 23 0 0 0 chr12 110871399 110871422 -10386108 + AT_rich Low_complexity Low_complexity 1 23 0 4 1430 1237 20 7 0 chr12 110872656 110872802 -10384728 + B1_Mm SINE Alu 1 147 0 4 1430 21 0 0 0 chr12 110872805 110872826 -10384704 + AT_rich Low_complexity Low_complexity 1 21 0 4 1430 238 68 44 22 chr12 110874460 110874505 -10383025 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 4 1430 250 331 75 62 chr12 110874522 110874643 -10382887 + RSINE1 SINE B4 3 124 -41 4 1430 321 47 0 0 chr12 110874643 110874686 -10382844 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 4 1430 250 331 75 62 chr12 110874686 110874725 -10382805 + RSINE1 SINE B4 125 165 0 4 1430 777 166 0 0 chr12 110874726 110874895 -10382635 + (CA)n Simple_repeat Simple_repeat 2 170 0 4 1430 327 343 0 81 chr12 110877502 110877613 -10379917 + PB1D7 SINE Alu 10 111 -9 4 1430 29 0 0 0 chr12 110877620 110877649 -10379881 + AT_rich Low_complexity Low_complexity 1 29 0 4 1430 262 236 0 18 chr12 110877981 110878037 -10379493 + PB1D10 SINE Alu 51 105 -12 4 1430 453 281 82 15 chr12 110878749 110878944 -10378586 - MER3 DNA MER1_type 0 209 2 4 1430 333 0 0 0 chr12 110882829 110882866 -10374664 + (TTA)n Simple_repeat Simple_repeat 2 38 0 4 1430 27 81 0 0 chr12 110884718 110884780 -10372750 + AT_rich Low_complexity Low_complexity 1 62 0 5 1430 319 339 77 0 chr12 110886347 110886477 -10371053 - MTD LTR MaLR -97 322 183 5 178 347 283 124 50 chr12 110886859 110887060 -10370470 + B3 SINE B2 1 216 0 5 1431 228 35 0 0 chr12 110887713 110887742 -10369788 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1431 1124 116 22 0 chr12 110888436 110888617 -10368913 + B2_Mm2 SINE B2 1 185 -10 5 1431 22 0 0 0 chr12 110891094 110891116 -10366414 + AT_rich Low_complexity Low_complexity 1 22 0 5 1431 29 47 0 0 chr12 110892178 110892221 -10365309 + AT_rich Low_complexity Low_complexity 1 43 0 5 1431 22 0 0 0 chr12 110895633 110895655 -10361875 + AT_rich Low_complexity Low_complexity 1 22 0 5 1431 262 248 62 35 chr12 110895732 110895845 -10361685 - Lx7 LINE L1 -16 7680 7565 5 1431 206 174 0 21 chr12 110896000 110896047 -10361483 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 5 1431 297 109 0 0 chr12 110896062 110896108 -10361422 + (TATG)n Simple_repeat Simple_repeat 4 49 0 5 1431 21 36 0 0 chr12 110896510 110896538 -10360992 + AT_rich Low_complexity Low_complexity 1 28 0 5 1431 371 224 28 3 chr12 110898452 110898552 -10358978 + ID4 SINE ID 2 105 -47 5 1431 2020 237 41 34 chr12 110898901 110899486 -10358044 + Lx7 LINE L1 6905 7493 -203 5 1431 1215 140 13 30 chr12 110899485 110899721 -10357809 - Lx LINE L1 -271 6383 6152 5 1431 250 282 33 33 chr12 110899721 110899901 -10357629 + Lx7 LINE L1 7516 7695 -1 5 1431 23 0 0 0 chr12 110900336 110900359 -10357171 + AT_rich Low_complexity Low_complexity 1 23 0 5 1431 287 284 52 21 chr12 110902367 110902464 -10355066 - RSINE1 SINE B4 -19 146 47 5 1431 27 49 0 0 chr12 110903687 110903728 -10353802 + AT_rich Low_complexity Low_complexity 1 41 0 5 1431 472 291 56 47 chr12 110903730 110903943 -10353587 - Lx8 LINE L1 -9 7464 7250 5 1431 297 51 0 0 chr12 110907470 110907509 -10350021 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1431 503 250 0 33 chr12 110907515 110907635 -10349895 - B1_Mur1 SINE Alu -2 147 32 5 1431 268 272 93 34 chr12 110909986 110910104 -10347426 + Lx8 LINE L1 7250 7374 -99 5 1431 910 169 78 46 chr12 110910786 110910866 -10346664 + URR1A DNA MER1_type 3 79 -147 5 1431 208 0 62 0 chr12 110910866 110910898 -10346632 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1431 1054 87 14 0 chr12 110910898 110911036 -10346494 - B1_Mur4 SINE Alu -9 141 2 5 1431 910 169 78 46 chr12 110911036 110911171 -10346359 + URR1A DNA MER1_type 80 225 -1 5 1431 214 178 0 0 chr12 110911880 110911925 -10345605 + T-rich Low_complexity Low_complexity 1 45 0 5 1431 225 291 78 44 chr12 110912418 110912508 -10345022 - B1F SINE Alu -51 98 6 5 1431 585 302 47 0 chr12 110913146 110913361 -10344169 - L1MA4 LINE L1 -271 6029 5805 5 1431 992 237 27 0 chr12 110913390 110913609 -10343921 - URR1B DNA MER1_type 0 225 1 5 1431 319 321 84 63 chr12 110913679 110914005 -10343525 + L1M2 LINE L1 5349 5684 -616 5 1431 288 0 0 0 chr12 110914005 110914037 -10343493 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1431 531 0 0 0 chr12 110914037 110914095 -10343435 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1431 319 321 84 63 chr12 110914095 110914229 -10343301 + L1M2 LINE L1 5685 5819 -481 5 1431 958 122 189 0 chr12 110914587 110914767 -10342763 + URR1A DNA MER1_type 10 223 -3 5 1431 520 38 0 37 chr12 110915495 110915576 -10341954 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 5 1431 216 125 35 35 chr12 110915584 110915642 -10341888 + (TATAA)n Simple_repeat Simple_repeat 2 59 0 5 1431 201 108 0 0 chr12 110915649 110915686 -10341844 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 5 1431 189 0 0 0 chr12 110920818 110920839 -10336691 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1431 1003 127 6 6 chr12 110924423 110924597 -10332933 + (TCTCC)n Simple_repeat Simple_repeat 2 175 0 5 1431 441 252 0 70 chr12 110926941 110927056 -10330474 + B1_Mus1 SINE Alu 21 127 -21 5 1431 192 125 0 0 chr12 110932791 110932823 -10324707 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 5 1431 249 244 25 13 chr12 110933035 110933114 -10324416 + (TGAG)n Simple_repeat Simple_repeat 4 83 0 5 1431 417 267 129 32 chr12 110933189 110933344 -10324186 + L2b LINE L2 3204 3373 -2 5 1431 232 231 0 19 chr12 110934089 110934142 -10323388 + CT-rich Low_complexity Low_complexity 2 53 0 5 1431 490 309 6 11 chr12 110934655 110934835 -10322695 + (CCA)n Simple_repeat Simple_repeat 1 179 0 5 1431 339 305 78 28 chr12 110934859 110935038 -10322492 + HAL1-2a_MD LINE L1 2340 2527 -497 5 1431 543 43 0 0 chr12 110937589 110937659 -10319871 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1431 293 102 0 17 chr12 110937742 110937802 -10319728 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 5 1431 211 224 0 0 chr12 110938243 110938292 -10319238 + T-rich Low_complexity Low_complexity 1 49 0 5 1431 231 328 34 24 chr12 110938292 110938498 -10319032 - HAL1 LINE L1 0 2507 2300 5 1431 252 263 56 56 chr12 110938526 110938651 -10318879 - HAL1 LINE L1 -196 2311 2187 5 1431 205 156 0 0 chr12 110938787 110938819 -10318711 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1431 395 119 0 15 chr12 110939616 110939684 -10317846 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 5 1431 400 299 19 63 chr12 110939732 110939939 -10317591 + B3 SINE B2 1 198 -18 5 1431 612 251 78 21 chr12 110940248 110940439 -10317091 - B3 SINE B2 -14 202 1 5 1431 650 164 8 49 chr12 110940687 110940809 -10316721 + PB1D10 SINE Alu 1 117 0 5 1431 182 62 31 0 chr12 110940820 110940852 -10316678 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5 1431 244 206 53 40 chr12 110941567 110941643 -10315887 - L1M5 LINE L1 -2472 3742 3666 5 1431 225 0 0 0 chr12 110941653 110941678 -10315852 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1431 212 0 36 0 chr12 110942461 110942489 -10315041 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1431 252 194 58 48 chr12 110943856 110943959 -10313571 - L1M5 LINE L1 -3918 2297 2194 5 1431 201 108 0 0 chr12 110943967 110944004 -10313526 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1431 194 109 43 0 chr12 110945357 110945403 -10312127 + (TCTCTG)n Simple_repeat Simple_repeat 3 50 0 5 1431 525 165 0 0 chr12 110945414 110945511 -10312019 + (CGTG)n Simple_repeat Simple_repeat 4 100 0 5 1431 356 119 71 0 chr12 110945896 110945980 -10311550 + C-rich Low_complexity Low_complexity 2 91 0 5 1431 1090 107 6 6 chr12 110945980 110946158 -10311372 + (TCTCC)n Simple_repeat Simple_repeat 2 179 0 5 1431 189 0 0 0 chr12 110947796 110947817 -10309713 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1431 188 121 91 0 chr12 110950648 110950681 -10306849 - L2c LINE L2 -232 3155 3120 5 1431 1259 34 0 13 chr12 110952573 110952722 -10304808 + B1_Mus1 SINE Alu 1 147 -1 5 1431 204 111 0 0 chr12 110952723 110952759 -10304771 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1431 1002 104 7 0 chr12 110952885 110953029 -10304501 + URR1A DNA MER1_type 81 225 -1 5 1431 252 0 0 0 chr12 110954152 110954180 -10303350 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1431 284 308 27 27 chr12 110955998 110956108 -10301422 + MLT1K LTR MaLR 458 567 -28 5 1431 399 311 91 0 chr12 110959148 110959280 -10298250 - B1_Mur2 SINE Alu -5 144 1 5 1431 332 269 145 40 chr12 110959286 110959410 -10298120 + B3A SINE B2 36 172 -26 5 1431 438 69 0 0 chr12 110959489 110959547 -10297983 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1431 198 0 0 0 chr12 110960101 110960123 -10297407 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1431 182 216 0 0 chr12 110961542 110961579 -10295951 + L2c LINE L2 3036 3072 -315 5 1431 229 321 12 0 chr12 110965621 110965702 -10291828 + MIR SINE MIR 18 99 -163 5 1431 423 0 0 0 chr12 110967412 110967459 -10290071 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1431 676 160 113 46 chr12 110967495 110967646 -10289884 - MER5A1 DNA MER1_type -1 165 5 5 1431 21 82 0 0 chr12 110970628 110970677 -10286853 + AT_rich Low_complexity Low_complexity 1 49 0 5 1431 295 308 125 7 chr12 110971188 110971332 -10286198 - L2 LINE L2 -2933 486 326 5 1431 197 191 48 0 chr12 110971729 110971771 -10285759 + L2 LINE L2 340 383 -3036 5 1431 189 0 0 0 chr12 110975555 110975576 -10281954 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1431 219 258 120 33 chr12 110977883 110977975 -10279555 + MIR SINE MIR 73 172 -90 5 1431 1379 12 0 29 chr12 110982947 110983151 -10274379 - L1Md_T LINE L1 0 6582 6415 5 1431 801 84 0 0 chr12 110983812 110983931 -10273599 + (GAAAA)n Simple_repeat Simple_repeat 2 120 0 5 1431 204 40 0 0 chr12 110985141 110985166 -10272364 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1431 238 215 90 30 chr12 110985196 110985263 -10272267 - MIR SINE MIR -74 134 64 5 1431 288 0 0 0 chr12 110986636 110986668 -10270862 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1431 852 264 21 58 chr12 110988730 110988948 -10268582 + B4A SINE B4 7 214 -78 5 1431 423 0 0 0 chr12 110988948 110988995 -10268535 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1431 852 264 21 58 chr12 110988995 110989017 -10268513 + B4A SINE B4 215 238 -54 5 1431 2953 104 70 31 chr12 110989018 110989505 -10268025 + Lx2 LINE L1 6492 6997 0 5 1431 437 276 0 30 chr12 110989530 110989631 -10267899 + RSINE1 SINE B4 58 155 -10 5 1431 333 178 80 27 chr12 110989772 110989847 -10267683 + B3A SINE B2 4 82 -116 5 1431 223 254 73 15 chr12 110990574 110990642 -10266888 + B2_Mm2 SINE B2 6 77 -118 5 1431 741 274 48 5 chr12 110990840 110991049 -10266481 + ID_B1 SINE B4 1 218 -6 5 1431 666 100 19 56 chr12 110991050 110991316 -10266214 + (TAGA)n Simple_repeat Simple_repeat 1 255 0 5 1431 563 246 0 6 chr12 110991836 110992016 -10265514 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 1431 779 283 11 5 chr12 110992114 110992299 -10265231 - B4A SINE B4 -104 188 3 5 1431 2740 231 96 73 chr12 110992299 110992366 -10265164 - RCHARR1 DNA MER1_type -35 939 869 5 1431 543 228 114 0 chr12 110992366 110992489 -10265041 - B1_Mur2 SINE Alu -10 139 3 5 1431 2740 231 96 73 chr12 110992489 110992696 -10264834 - RCHARR1 DNA MER1_type -106 868 670 5 1431 2224 137 49 3 chr12 110992696 110993040 -10264490 - Lx4A LINE L1 -1 7057 6698 5 1431 2740 231 96 73 chr12 110993040 110993670 -10263860 - RCHARR1 DNA MER1_type -305 669 15 5 1431 317 133 0 0 chr12 110993877 110993922 -10263608 - HAL1-3A_ME LINE L1 -839 2019 1975 6 1431 542 224 0 7 chr12 110993922 110994070 -10263460 + (TA)n Simple_repeat Simple_repeat 2 148 0 6 1431 738 220 0 0 chr12 110994048 110994225 -10263305 + (CATA)n Simple_repeat Simple_repeat 2 178 0 6 1431 255 324 103 16 chr12 110995041 110995226 -10262304 - L1M2 LINE L1 -1223 4920 4720 6 1431 2227 48 5 6 chr12 110995226 110995536 -10261994 + MTA_Mm LTR MaLR 1 301 -106 6 1431 1526 48 0 0 chr12 110995471 110995657 -10261873 + MT2_Mm LTR ERVL 308 493 0 6 1431 237 242 0 16 chr12 110995657 110995720 -10261810 - L1M2 LINE L1 -1419 4724 4663 6 1431 216 329 0 0 chr12 110995723 110995805 -10261725 + T-rich Low_complexity Low_complexity 1 82 0 6 1431 14932 129 19 3 chr12 110995807 110999524 -10258006 - Lx2A LINE L1 0 7008 3222 6 1431 2095 116 20 48 chr12 110999525 110999877 -10257653 - RMER4B LTR ERVK -240 345 4 6 1431 500 255 0 19 chr12 111000000 111000108 -10257422 - B3A SINE B2 -92 106 1 1 1431 579 229 7 64 chr12 111000378 111000518 -10257012 - B3A SINE B2 -5 193 62 2 1431 4325 43 3 3 chr12 111000518 111001096 -10256434 + LTRIS_Mus LTR ERV1 10 587 0 3 1431 1750 156 96 6 chr12 111001111 111001465 -10256065 + ORR1B1 LTR MaLR 1 386 -8 4 1431 318 50 0 0 chr12 111001501 111001541 -10255989 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1431 195 42 0 0 chr12 111001636 111001660 -10255870 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 1431 635 274 203 9 chr12 111001660 111002070 -10255460 - L1MA4 LINE L1 -158 5966 5471 7 1431 375 292 9 0 chr12 111002087 111002193 -10255337 + (TG)n Simple_repeat Simple_repeat 2 108 0 8 1431 241 337 23 0 chr12 111002395 111002567 -10254963 + (TG)n Simple_repeat Simple_repeat 2 177 0 9 1431 538 272 77 36 chr12 111002578 111002746 -10254784 - B3A SINE B2 -21 177 3 1 1431 228 100 0 0 chr12 111002910 111002950 -10254580 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1431 227 318 0 23 chr12 111002959 111003046 -10254484 + L1M2 LINE L1 2843 2927 -3216 1 1431 1990 299 97 53 chr12 111003248 111003550 -10253980 - L1_Rod LINE L1 -2868 2979 2677 1 1431 2603 197 60 30 chr12 111003550 111004147 -10253383 + RLTR18 LTR ERVK 1 615 -1 1 1431 1990 299 97 53 chr12 111004147 111004522 -10253008 - L1_Rod LINE L1 -3171 2676 2285 1 1431 216 0 0 0 chr12 111004522 111004546 -10252984 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1431 1990 299 97 53 chr12 111004546 111005060 -10252470 - L1_Rod LINE L1 -3563 2284 1726 1 1431 1193 41 7 0 chr12 111005060 111005206 -10252324 - B1_Mus2 SINE Alu 0 147 1 1 1431 1990 304 88 48 chr12 111005206 111005755 -10251775 - L1_Rod LINE L1 -4122 1725 1163 1 1431 445 222 333 0 chr12 111005938 111006100 -10251430 + B3 SINE B2 1 216 0 1 1431 279 221 88 37 chr12 111006117 111006253 -10251277 + HAL1 LINE L1 2240 2382 -125 1 1431 311 269 0 0 chr12 111006345 111006412 -10251118 - PB1D10 SINE Alu -27 90 24 1 1431 16236 19 0 1 chr12 111006476 111009002 -10248528 - L1Md_T LINE L1 0 6582 4058 2 1431 981 272 119 93 chr12 111009052 111009588 -10247942 + Lx5 LINE L1 6483 7032 -18 2 1431 301 282 11 91 chr12 111011344 111011520 -10246010 - L1M2c LINE L1 -3527 3318 3152 2 1431 240 228 53 0 chr12 111011521 111011578 -10245952 + Lx7 LINE L1 7048 7107 -589 2 1431 469 350 16 4 chr12 111011574 111011821 -10245709 - L1M2c LINE L1 -3686 3159 2910 2 1431 207 0 0 0 chr12 111011822 111011845 -10245685 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1431 1844 164 69 19 chr12 111011895 111012255 -10245275 + ORR1C1 LTR MaLR 1 378 0 2 1431 1928 207 23 14 chr12 111012255 111012687 -10244843 + ORR1C1-int LTR MaLR 1 436 -1073 2 1431 300 122 0 0 chr12 111012710 111012759 -10244771 + RLTR15 LTR ERVK 311 359 0 2 1431 1618 174 127 33 chr12 111012759 111013191 -10244339 + ORR1C1-int LTR MaLR 942 1388 -192 2 1431 1064 63 0 7 chr12 111013191 111013334 -10244196 + L1_Mus1 LINE L1 6426 6567 0 2 1431 860 136 50 24 chr12 111013334 111013503 -10244027 + ORR1C1-int LTR MaLR 1220 1527 -53 2 1431 1605 195 79 57 chr12 111013503 111013872 -10243658 + ORR1C1 LTR MaLR 2 378 0 2 1431 660 255 108 136 chr12 111013872 111013885 -10243645 + ORR1C1-int LTR MaLR 1528 1540 -40 2 1431 204 40 0 0 chr12 111013956 111013981 -10243549 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1431 550 331 50 0 chr12 111013981 111014162 -10243368 - Lx8 LINE L1 -148 7325 7136 3 1431 249 299 16 41 chr12 111014168 111014290 -10243240 - Lx7 LINE L1 -599 7097 6979 3 1431 265 321 110 30 chr12 111014309 111014826 -10242704 - L1M2c LINE L1 -4039 2510 1895 2 1431 1102 104 30 25 chr12 111015106 111015304 -10242226 - L1_Mus3 LINE L1 0 6638 6440 3 1431 546 16 0 0 chr12 111015320 111015383 -10242147 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1431 520 228 8 39 chr12 111015533 111015661 -10241869 + MTD LTR MaLR 1 124 -295 3 1431 911 255 109 18 chr12 111015672 111015892 -10241638 - Lx5 LINE L1 0 7050 6811 3 1431 802 100 0 24 chr12 111015897 111016020 -10241510 - B2_Mm2 SINE B2 -61 134 15 3 1431 243 333 0 0 chr12 111015949 111016030 -10241500 - RSINE1 SINE B4 -79 86 6 3 1431 10322 167 24 79 chr12 111016030 111016459 -10241071 - L1_Mur3 LINE L1 -290 5587 5233 3 1431 1183 69 0 0 chr12 111016459 111016604 -10240926 - B1_Mus2 SINE Alu 0 147 3 3 1431 10322 167 24 79 chr12 111016604 111017707 -10239823 - L1_Mur3 LINE L1 -645 5232 4179 3 178 1654 138 12 81 chr12 111017707 111018053 -10239477 + RLTRETN_Mm LTR ERVK 1 322 0 4 1432 10322 167 24 79 chr12 111018053 111018771 -10238759 - L1_Mur3 LINE L1 -1699 4178 3461 3 1432 8053 74 1 8 chr12 111018783 111020460 -10237070 - L1_Mus1 LINE L1 0 6567 4904 4 1432 11746 157 32 25 chr12 111020462 111021882 -10235648 - L1_Mur3 LINE L1 -2403 3474 2060 3 1432 387 0 0 0 chr12 111021882 111021925 -10235605 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1432 11746 173 58 22 chr12 111021925 111023071 -10234459 - L1_Mur3 LINE L1 -3818 2059 854 3 1432 612 236 249 4 chr12 111023471 111023704 -10233826 + MTD LTR MaLR 130 419 0 3 1432 414 0 0 0 chr12 111024314 111024360 -10233170 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1432 21 0 0 0 chr12 111024393 111024414 -10233116 + AT_rich Low_complexity Low_complexity 1 21 0 4 1432 905 154 55 0 chr12 111024642 111024664 -10232866 - B2_Mm1t SINE B2 0 193 166 4 1432 360 0 0 0 chr12 111024664 111024704 -10232826 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 1432 1114 75 13 0 chr12 111024704 111024863 -10232667 - B2_Mm2 SINE B2 -33 162 2 4 1432 5081 232 22 54 chr12 111024933 111026523 -10231007 - Lx7 LINE L1 -169 7291 5796 4 1432 2267 260 108 49 chr12 111026618 111027567 -10229963 - L1M2 LINE L1 -2191 3952 2934 4 1432 203 0 37 0 chr12 111027567 111027594 -10229936 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 1432 2267 260 108 49 chr12 111027594 111027757 -10229773 - L1M2 LINE L1 -3210 2933 2775 4 1432 283 311 90 0 chr12 111027810 111027932 -10229598 - L1M2 LINE L1 -3495 2648 2516 4 1432 23654 141 61 13 chr12 111029400 111034501 -10223029 - Lx5 LINE L1 -375 6675 1297 5 1432 207 0 0 0 chr12 111034501 111034524 -10223006 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1432 23654 173 214 23 chr12 111034524 111034878 -10222652 - Lx5 LINE L1 -4581 1296 882 5 1432 322 280 158 32 chr12 111035122 111035369 -10222161 - L1M3 LINE L1 -815 5325 5048 5 1432 675 154 0 0 chr12 111035369 111035479 -10222051 - ORR1C2 LTR MaLR 0 384 275 5 1432 568 207 8 8 chr12 111035476 111035598 -10221932 - ORR1C2 LTR MaLR -260 124 3 5 1432 467 213 31 0 chr12 111035600 111035727 -10221803 - L1M3 LINE L1 -1089 5051 4921 5 1432 1125 251 104 6 chr12 111035949 111036286 -10221244 - ORR1D2 LTR MaLR 0 370 1 5 1432 710 242 114 62 chr12 111037976 111038249 -10219281 + Lx8 LINE L1 7186 7472 -1 5 1432 315 229 20 0 chr12 111038265 111038360 -10219170 - L1M2 LINE L1 -960 5331 5226 5 1432 299 78 20 0 chr12 111038364 111038415 -10219115 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1432 663 255 7 0 chr12 111038430 111038571 -10218959 + B1_Mur1 SINE Alu 2 143 -6 5 1432 243 233 0 16 chr12 111038601 111038662 -10218868 - L1M2 LINE L1 -1072 5068 5009 5 1432 1767 143 9 60 chr12 111038671 111039005 -10218525 - ORR1A4 LTR MaLR -8 321 5 6 1432 1834 259 80 32 chr12 111039013 111039676 -10217854 - L1M2 LINE L1 -1136 5007 4313 5 1432 2693 256 110 19 chr12 111039683 111040507 -10217023 + Lx8 LINE L1 6324 7222 -251 6 1432 354 266 98 59 chr12 111040567 111040635 -10216895 - L1M2 LINE L1 -1812 4328 4257 5 1432 267 31 0 0 chr12 111040635 111040667 -10216863 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1432 354 266 98 59 chr12 111040667 111040802 -10216728 - L1M2 LINE L1 -1884 4256 4117 5 1432 236 318 27 45 chr12 111040993 111041105 -10216425 + B4 SINE B4 2 111 -181 6 1432 701 256 146 5 chr12 111042054 111042246 -10215284 + B4A SINE B4 73 291 -1 6 1432 274 308 13 0 chr12 111045028 111045106 -10212424 + ID4_ SINE ID 5 83 0 6 1432 424 270 10 0 chr12 111045320 111045420 -10212110 + PB1D7 SINE Alu 13 113 -7 6 1432 363 192 66 52 chr12 111045473 111045623 -10211907 + L1M3e LINE L1 2011 2160 -4867 6 1432 852 213 28 65 chr12 111045870 111046086 -10211444 + B3 SINE B2 1 208 -8 6 1432 298 323 78 5 chr12 111046100 111046301 -10211229 + L1M3e LINE L1 2501 2715 -4392 6 1432 1078 301 68 58 chr12 111046456 111047252 -10210278 + L1M3e LINE L1 3114 3917 -3186 6 1432 1430 303 84 52 chr12 111047413 111048800 -10208730 + L1_Rod LINE L1 4393 5799 -81 6 1432 342 244 0 24 chr12 111048814 111048898 -10208632 + ORR1E LTR MaLR 8 89 -270 7 1432 684 116 63 4 chr12 111048902 111049161 -10208369 + (TAGA)n Simple_repeat Simple_repeat 1 274 0 7 1432 2303 141 30 50 chr12 111049241 111049643 -10207887 + ORR1B1 LTR MaLR 1 394 0 7 1432 271 93 0 69 chr12 111049655 111049713 -10207817 + C-rich Low_complexity Low_complexity 2 55 0 7 1432 1801 314 47 25 chr12 111049736 111050443 -10207087 - Lx9 LINE L1 -458 7186 6465 7 1432 2524 218 69 14 chr12 111050430 111051006 -10206524 - Lx7 LINE L1 -1479 6217 5610 7 1432 6498 85 46 13 chr12 111051006 111051865 -10205665 - RLTR13D4 LTR ERVK 0 1033 145 7 1432 1335 186 57 37 chr12 111051865 111052217 -10205313 - RLTR10D LTR ERVK 0 359 1 7 1432 6498 85 46 13 chr12 111052217 111052357 -10205173 - RLTR13D4 LTR ERVK -889 144 1 7 1432 8805 152 29 46 chr12 111052357 111052924 -10204606 - Lx7 LINE L1 -268 5612 5051 7 1432 957 128 0 0 chr12 111052924 111053104 -10204426 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1432 8805 152 29 46 chr12 111053104 111053539 -10203991 - Lx7 LINE L1 -830 5050 4615 7 1432 369 75 0 0 chr12 111053539 111053592 -10203938 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1432 8805 152 29 46 chr12 111053592 111054236 -10203294 - Lx7 LINE L1 -1266 4614 3994 7 1432 1107 207 28 90 chr12 111054289 111054308 -10203222 - Lx7 LINE L1 0 7696 7680 8 1432 3535 162 40 2 chr12 111054308 111054913 -10202617 + Lx5 LINE L1 6423 7050 0 8 1432 1107 207 28 90 chr12 111054913 111055248 -10202282 - Lx7 LINE L1 -17 7679 7364 8 1432 612 152 0 0 chr12 111055261 111055360 -10202170 - L1_Mur3 LINE L1 -622 5258 5160 8 1432 237 132 0 0 chr12 111055397 111055435 -10202095 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1432 224 65 130 0 chr12 111055866 111055912 -10201618 + (TCTG)n Simple_repeat Simple_repeat 1 52 0 8 1432 983 233 25 59 chr12 111055912 111056236 -10201294 + L1_Mur3 LINE L1 398 710 -7002 8 1432 1035 235 54 108 chr12 111056307 111056521 -10201009 - L1_Rod LINE L1 -1558 4289 4057 8 1432 2797 33 45 0 chr12 111056521 111056852 -10200678 + ORR1A0 LTR MaLR 1 346 0 8 1432 1035 235 54 108 chr12 111056852 111056888 -10200642 - L1_Rod LINE L1 -1791 4056 4053 8 1432 3320 110 7 2 chr12 111056888 111057353 -10200177 - Lx LINE L1 -2 6652 6186 8 1432 1035 235 54 108 chr12 111057353 111057545 -10199985 - L1_Rod LINE L1 -1795 4052 3870 8 1432 3103 266 69 27 chr12 111057541 111058685 -10198845 - L1_Rod LINE L1 -3221 2626 1435 8 1432 3409 41 74 74 chr12 111058718 111059193 -10198337 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1432 5726 68 12 19 chr12 111059195 111059944 -10197586 - IAPEz-int LTR ERVK -2 6479 5736 8 1432 2315 54 0 0 chr12 111059943 111060221 -10197309 - IAPEz-int LTR ERVK -4845 1636 1359 8 1432 4031 47 2 18 chr12 111060221 111060724 -10196806 - IAPEz-int LTR ERVK -5819 662 168 8 1432 255 244 0 0 chr12 111060724 111060769 -10196761 - RLTR27 LTR ERVK -34 275 231 9 1432 1312 137 62 18 chr12 111060771 111061045 -10196485 - IAPEz-int LTR ERVK -7323 258 9 8 1432 2930 19 135 0 chr12 111061046 111061408 -10196122 - IAPLTR2_Mm LTR ERVK 0 411 1 8 1432 1207 229 67 37 chr12 111061408 111061895 -10195635 - L1_Rod LINE L1 -4437 1410 909 8 1432 545 267 395 26 chr12 111062074 111062325 -10195205 + ORR1E LTR MaLR 76 419 0 9 1432 258 273 23 0 chr12 111062345 111062433 -10195097 + Lx8 LINE L1 5816 5905 -1568 9 1432 913 287 35 21 chr12 111063268 111063536 -10193994 - RMER5 LTR ERV1 0 534 263 9 1432 955 193 103 5 chr12 111063536 111063630 -10193900 - RLTR20D LTR ERVK 0 568 475 9 1432 234 0 0 0 chr12 111063630 111063656 -10193874 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1432 1996 161 37 11 chr12 111063656 111064055 -10193475 - RLTR20D LTR ERVK -94 474 1 9 1432 795 244 46 10 chr12 111064104 111064299 -10193231 - RMER5 LTR ERV1 -332 202 1 9 1432 22 0 0 0 chr12 111064642 111064664 -10192866 + AT_rich Low_complexity Low_complexity 1 22 0 9 1432 231 154 39 0 chr12 111064666 111064718 -10192812 + L1M2 LINE L1 2932 2985 -3155 9 1432 968 156 0 11 chr12 111064762 111064943 -10192587 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 9 1432 336 281 190 18 chr12 111064946 111065055 -10192475 + L1M2 LINE L1 3053 3188 -2955 9 1432 543 69 0 0 chr12 111065055 111065127 -10192403 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 9 1432 336 281 190 18 chr12 111065127 111065180 -10192350 + L1M2 LINE L1 3189 3242 -2901 9 1432 394 297 0 38 chr12 111066478 111066583 -10190947 + B1F1 SINE Alu 15 115 -34 1 1432 480 18 0 0 chr12 111066583 111066640 -10190890 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1432 577 143 9 18 chr12 111066722 111066836 -10190694 + GA-rich Low_complexity Low_complexity 3 115 0 1 1432 1223 281 128 89 chr12 111066965 111068137 -10189393 + L1M2 LINE L1 3909 5126 -1017 9 1432 198 0 0 0 chr12 111068440 111068462 -10189068 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 1 1432 372 59 0 0 chr12 111068501 111068552 -10188978 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1432 1666 213 111 5 chr12 111070227 111070595 -10186935 + MTD LTR MaLR 8 414 -5 1 1432 551 263 165 14 chr12 111071578 111071790 -10185740 - MTE2a LTR MaLR -93 286 43 1 1432 279 218 22 8 chr12 111072021 111072163 -10185367 + (TCCA)n Simple_repeat Simple_repeat 1 144 0 1 1432 277 234 143 101 chr12 111076235 111076354 -10181176 + MLT1A1 LTR MaLR 235 358 -50 1 1432 351 277 18 0 chr12 111076483 111076595 -10180935 + PB1D10 SINE Alu 4 117 0 1 1432 277 339 98 22 chr12 111076891 111077075 -10180455 + Lx8 LINE L1 7263 7460 -13 1 1432 1353 236 31 64 chr12 111079121 111079510 -10178020 - MTEb LTR MaLR -3 376 1 1 1432 186 371 0 30 chr12 111080353 111080453 -10177077 - L4 LINE RTE -1626 403 307 1 1432 247 143 29 48 chr12 111080609 111080712 -10176818 + (TCTG)n Simple_repeat Simple_repeat 4 104 0 1 1432 427 285 145 120 chr12 111080743 111080827 -10176703 - B4A SINE B4 -2 290 220 1 1432 970 227 10 10 chr12 111080827 111081036 -10176494 - B3 SINE B2 -4 212 4 1 1432 427 285 145 120 chr12 111081036 111081234 -10176296 - B4A SINE B4 -73 219 1 1 1432 322 179 21 0 chr12 111082202 111082297 -10175233 + GA-rich Low_complexity Low_complexity 1 97 0 1 1432 259 333 0 0 chr12 111082310 111082436 -10175094 + GA-rich Low_complexity Low_complexity 2 127 0 1 1432 291 268 179 90 chr12 111082607 111082841 -10174689 + ORR1E LTR MaLR 82 336 -23 1 1432 336 48 0 0 chr12 111082961 111083003 -10174527 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1432 276 226 179 0 chr12 111083236 111083320 -10174210 + MER2B DNA MER2_type 228 326 -10 1 1432 190 324 9 54 chr12 111083492 111083603 -10173927 - L2b LINE L2 -87 3288 3183 1 1432 282 56 0 0 chr12 111084079 111084115 -10173415 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 1 1432 555 29 0 0 chr12 111084271 111084340 -10173190 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1432 333 0 0 0 chr12 111084340 111084376 -10173154 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1432 458 289 78 9 chr12 111084389 111084504 -10173026 - RSINE1 SINE B4 -40 125 3 1 1432 704 266 145 125 chr12 111084566 111084910 -10172620 + ORR1E LTR MaLR 4 354 -5 1 1432 309 276 50 20 chr12 111085391 111085491 -10172039 - PB1 SINE Alu 0 127 25 1 1432 383 0 21 0 chr12 111086175 111086222 -10171308 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1432 570 273 179 55 chr12 111086289 111086617 -10170913 - ORR1D2 LTR MaLR 0 370 2 1 1432 385 299 32 29 chr12 111087610 111087941 -10169589 + L1_Rod LINE L1 1151 1485 -4362 1 1432 298 259 73 18 chr12 111088105 111088215 -10169315 + L1_Rod LINE L1 2104 2219 -3628 1 1432 789 134 29 7 chr12 111088224 111088540 -10168990 + CT-rich Low_complexity Low_complexity 1 323 0 1 1432 540 291 53 22 chr12 111088551 111088776 -10168754 + L1_Mur3 LINE L1 2193 2424 -3456 1 1432 1202 288 82 11 chr12 111088902 111089437 -10168093 + L1_Mur3 LINE L1 5152 5688 -192 1 1432 800 309 56 10 chr12 111089463 111089882 -10167648 + L1_Rod LINE L1 3209 3652 -2195 1 1432 997 218 81 109 chr12 111089950 111090362 -10167168 + MT2A LTR ERVL 1 544 -57 1 1432 569 91 0 22 chr12 111090362 111090452 -10167078 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 1 1432 650 261 59 125 chr12 111090452 111090506 -10167024 + MT2A LTR ERVL 545 583 -18 1 1432 1133 119 160 0 chr12 111090524 111090718 -10166812 - URR1B DNA MER1_type 0 225 1 1 1432 475 274 54 24 chr12 111090762 111090930 -10166600 + L1M4 LINE L1 4209 4381 -1765 1 1432 547 242 39 24 chr12 111090931 111091058 -10166472 + B3A SINE B2 1 129 -69 1 1432 2830 294 117 84 chr12 111091076 111092598 -10164932 - L1M4b LINE L1 -1090 5913 4204 1 1432 4973 74 3 3 chr12 111092598 111093251 -10164279 - L1_Mus3 LINE L1 0 6638 5986 1 1432 2830 294 117 84 chr12 111093251 111093761 -10163769 - L1M4b LINE L1 -2800 4203 3734 1 1432 251 256 0 0 chr12 111093761 111093804 -10163726 + RSINE1 SINE B4 103 145 -20 1 1432 207 0 0 0 chr12 111093805 111093828 -10163702 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1432 2830 294 117 84 chr12 111093828 111094377 -10163153 - L1M4b LINE L1 -3271 3732 3201 1 1432 4149 137 26 110 chr12 111094392 111095000 -10162530 + RMER1A Other Other 271 880 -150 1 1432 1620 7 0 0 chr12 111095000 111095306 -10162224 + (TG)n Simple_repeat Simple_repeat 1 306 0 1 1432 4149 137 26 110 chr12 111095306 111095382 -10162148 + RMER1A Other Other 881 910 -120 1 1432 1038 102 0 0 chr12 111095382 111095621 -10161909 + (TG)n Simple_repeat Simple_repeat 1 239 0 1 1432 4149 137 26 110 chr12 111095621 111095745 -10161785 + RMER1A Other Other 911 1015 -15 1 1432 1687 323 67 25 chr12 111095770 111096829 -10160701 - L1_Rod LINE L1 -3521 2326 1224 1 1432 189 0 0 0 chr12 111097566 111097587 -10159943 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1432 288 246 29 0 chr12 111097666 111097735 -10159795 - ID4_ SINE ID -9 74 4 1 1432 414 0 0 0 chr12 111097773 111097819 -10159711 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1 1432 465 312 32 0 chr12 111097827 111097984 -10159546 - L1M4b LINE L1 -5826 1508 1347 1 1432 397 345 138 33 chr12 111098233 111098306 -10159224 - L1M4b LINE L1 -5668 1236 1140 1 1432 306 0 0 0 chr12 111098306 111098340 -10159190 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1432 397 345 138 33 chr12 111098340 111098751 -10158779 - L1M4b LINE L1 -5765 1139 702 1 1432 582 309 130 73 chr12 111099286 111099373 -10158157 - L1_Mur3 LINE L1 -85 5795 5709 1 1432 3208 100 32 23 chr12 111099373 111099844 -10157686 + MT2C_Mm LTR ERVL 1 475 0 1 1432 942 304 98 55 chr12 111099844 111100907 -10156623 - L1_Mur3 LINE L1 -172 5708 4610 1 1432 1748 270 72 24 chr12 111100918 111101502 -10156028 - Lx8 LINE L1 0 7473 6860 1 1432 221 0 35 0 chr12 111101502 111101531 -10155999 + (GGA)n Simple_repeat Simple_repeat 1 30 0 1 1432 447 214 0 31 chr12 111101564 111101723 -10155807 + GA-rich Low_complexity Low_complexity 3 156 0 1 1432 1027 274 67 64 chr12 111101725 111102286 -10155244 - Lx8 LINE L1 -850 6846 6252 1 1432 2502 313 78 42 chr12 111102366 111103452 -10154078 - L1_Mur3 LINE L1 -2058 3822 2693 1 1432 369 0 0 0 chr12 111103452 111103493 -10154037 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1432 2502 313 78 42 chr12 111103493 111104172 -10153358 - L1_Mur3 LINE L1 -3188 2692 1994 1 1432 8474 109 78 4 chr12 111104369 111105812 -10151718 - Lx2 LINE L1 0 6997 5448 1 1432 481 270 104 13 chr12 111105813 111106121 -10151409 - L1_Rod LINE L1 -4088 1759 1420 1 1432 1107 94 0 0 chr12 111106216 111106396 -10151134 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1432 430 279 75 42 chr12 111106460 111106679 -10150851 - L1M4 LINE L1 -407 5772 5545 1 1432 320 228 125 0 chr12 111106679 111106768 -10150762 + PB1D10 SINE Alu 18 117 -3 1 1432 219 69 0 0 chr12 111106775 111106804 -10150726 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1 1432 836 302 73 15 chr12 111107179 111107451 -10150079 - B4A SINE B4 -4 288 1 1 1432 802 261 132 13 chr12 111107529 111107835 -10149695 - MTEa LTR MaLR -14 356 19 1 1432 298 266 70 38 chr12 111107979 111108165 -10149365 - L1M4 LINE L1 -1210 4936 4746 1 1432 351 44 0 0 chr12 111108191 111108236 -10149294 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1432 578 51 0 13 chr12 111108242 111108321 -10149209 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1432 514 322 52 17 chr12 111108322 111108496 -10149034 - B3A SINE B2 -18 180 1 1 1432 1802 132 30 36 chr12 111108680 111109009 -10148521 + IAPEY3_LTR LTR ERVK 1 327 -5 1 1432 22 0 0 0 chr12 111109885 111109907 -10147623 + AT_rich Low_complexity Low_complexity 1 22 0 1 1432 1090 186 199 50 chr12 111111471 111111793 -10145737 - ORR1D2 LTR MaLR 0 370 1 1 1432 587 319 8 25 chr12 111111968 111112206 -10145324 - L1M5 LINE L1 -390 5774 5541 1 1432 207 0 0 0 chr12 111112335 111112358 -10145172 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1432 2060 235 63 28 chr12 111112390 111112995 -10144535 - Lx8 LINE L1 -27 7446 6821 1 1432 1562 299 42 19 chr12 111113011 111113536 -10143994 - Lx8 LINE L1 -746 6727 6191 1 1432 604 72 39 23 chr12 111113976 111114105 -10143425 + (CAGAGA)n Simple_repeat Simple_repeat 4 134 0 1 1432 409 258 41 0 chr12 111114107 111114204 -10143326 + ORR1D2 LTR MaLR 265 365 -5 1 1432 249 159 0 0 chr12 111114351 111114395 -10143135 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 1432 4584 32 0 0 chr12 111114440 111114965 -10142565 - L1Md_T LINE L1 -1 6581 6057 1 1432 339 67 0 0 chr12 111114965 111115010 -10142520 + L1Md_T LINE L1 6022 6066 -516 1 1432 229 180 148 0 chr12 111115356 111115417 -10142113 - L1MC3 LINE L1 -324 6009 5940 1 1432 565 299 10 5 chr12 111115576 111115768 -10141762 - L1MC3 LINE L1 -1885 5900 5708 1 1432 7551 75 29 0 chr12 111115789 111117080 -10140450 + L1_Mus3 LINE L1 5318 6636 -2 1 1432 709 298 79 9 chr12 111117100 111117442 -10140088 - L1MC3 LINE L1 -630 5703 5338 1 1432 554 285 55 13 chr12 111117514 111117752 -10139778 - L1MC3 LINE L1 -902 5244 4997 1 1432 291 286 26 13 chr12 111117761 111117839 -10139691 - ID4 SINE ID -3 80 2 1 1432 429 20 0 0 chr12 111118332 111118382 -10139148 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1432 983 275 43 89 chr12 111118542 111118845 -10138685 - B4 SINE B4 -1 291 3 1 1432 345 47 0 0 chr12 111119709 111119752 -10137778 + (CCCA)n Simple_repeat Simple_repeat 1 43 0 1 1432 294 203 61 30 chr12 111119763 111119829 -10137701 - ID4 SINE ID -14 69 2 1 1432 204 180 48 16 chr12 111120110 111120172 -10137358 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 1 1432 899 118 73 7 chr12 111120172 111120309 -10137221 - B1_Mur3 SINE Alu -1 148 3 1 1432 288 0 0 0 chr12 111120444 111120476 -10137054 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1 1432 1109 107 6 6 chr12 111120476 111120636 -10136894 - B2_Mm1t SINE B2 -33 160 1 1 1432 346 301 61 9 chr12 111120971 111121085 -10136445 - RSINE1 SINE B4 -43 122 3 1 1432 549 0 0 0 chr12 111121146 111121207 -10136323 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1432 459 0 0 0 chr12 111121207 111121257 -10136273 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1432 1216 48 7 0 chr12 111121258 111121403 -10136127 - B1_Mm SINE Alu -1 146 1 1 1432 569 166 33 170 chr12 111121649 111121831 -10135699 + MTE2a LTR MaLR 2 158 -221 1 1432 315 208 76 102 chr12 111122405 111122523 -10135007 + MTE2a LTR MaLR 150 264 -115 1 1432 1790 250 116 32 chr12 111122620 111123251 -10134279 - Lx9 LINE L1 -1 7643 6960 1 1432 249 319 65 61 chr12 111123262 111123419 -10134111 - L1MC2 LINE L1 -314 7862 7713 1 1432 315 0 0 0 chr12 111123419 111123454 -10134076 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1432 249 319 65 61 chr12 111123454 111123526 -10134004 - L1MC2 LINE L1 -464 7712 7633 1 1432 935 294 18 0 chr12 111123974 111124202 -10133328 - ORR1D1 LTR MaLR 0 374 143 1 1432 6370 197 55 31 chr12 111124231 111125570 -10131960 + ORR1D1-int LTR MaLR 1 1370 0 1 1432 1660 190 61 15 chr12 111125574 111125916 -10131614 + ORR1D1 LTR MaLR 5 362 -12 1 1432 243 302 140 40 chr12 111126055 111126155 -10131375 + MLT1A1 LTR MaLR 21 130 -278 1 1432 269 299 40 30 chr12 111126189 111126289 -10131241 + ORR1E LTR MaLR 97 197 -162 1 1432 1451 245 39 18 chr12 111126347 111126684 -10130846 - MTD LTR MaLR 0 419 76 1 1432 981 232 10 0 chr12 111126701 111126899 -10130631 - B3 SINE B2 -16 200 1 2 1432 244 343 101 36 chr12 111127059 111127198 -10130332 - B4 SINE B4 -20 272 125 2 1432 242 282 0 0 chr12 111127262 111127333 -10130197 - L1MC2 LINE L1 -1393 6783 6713 1 1432 1960 234 48 29 chr12 111127712 111128232 -10129298 - L1MC2 LINE L1 -494 6241 5714 1 1432 236 30 30 0 chr12 111128232 111128265 -10129265 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2 1432 1960 291 57 74 chr12 111128265 111128463 -10129067 - L1MC2 LINE L1 -1022 5713 5548 1 1432 876 255 90 43 chr12 111128463 111128742 -10128788 - B4 SINE B4 0 292 1 2 1432 387 316 61 93 chr12 111128742 111129300 -10128230 - L1MC2 LINE L1 -990 5547 4976 1 1432 222 304 83 118 chr12 111129387 111129663 -10127867 - B4A SINE B4 -12 280 1 2 1432 227 350 19 74 chr12 111130195 111130303 -10127227 + B1F SINE Alu 13 114 -35 2 1432 985 300 61 33 chr12 111130387 111130810 -10126720 - L1MC2 LINE L1 -4947 1686 1242 1 1432 1026 0 0 0 chr12 111130810 111130924 -10126606 + (TTC)n Simple_repeat Simple_repeat 1 114 0 2 1432 985 300 53 32 chr12 111130924 111131189 -10126341 - L1MC2 LINE L1 -5287 1253 977 1 1432 309 299 51 58 chr12 111132159 111132315 -10125215 + MIRb SINE MIR 51 205 -63 2 1432 309 277 0 46 chr12 111132323 111132410 -10125120 + B4 SINE B4 209 291 -1 2 1432 268 336 57 25 chr12 111132417 111132539 -10124991 - MLT1A0-int LTR MaLR -1025 464 339 2 1432 279 0 0 0 chr12 111132570 111132601 -10124929 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1432 609 274 100 15 chr12 111133695 111133895 -10123635 - MLT1A0 LTR MaLR -14 351 135 2 1432 831 154 28 14 chr12 111134232 111134377 -10123153 - URR1A DNA MER1_type -79 147 1 2 1432 229 175 0 0 chr12 111136527 111136567 -10120963 + C-rich Low_complexity Low_complexity 1 40 0 2 1432 201 245 38 0 chr12 111138696 111138749 -10118781 - L3 LINE CR1 -116 4373 4319 2 1432 491 67 27 0 chr12 111139027 111139102 -10118428 + (CAAAA)n Simple_repeat Simple_repeat 2 78 0 2 1432 226 203 162 59 chr12 111139396 111139464 -10118066 - MamGypLTR1c LTR Gypsy -663 140 66 2 1432 2972 15 0 43 chr12 111140174 111140526 -10117004 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1432 54512 18 17 0 chr12 111140526 111146894 -10110636 + IAPEz-int LTR ERVK 8 6481 0 2 1432 2972 15 0 43 chr12 111146894 111147246 -10110284 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1432 767 278 57 23 chr12 111148311 111148576 -10108954 + B4A SINE B4 1 274 -18 2 1432 432 0 0 0 chr12 111148588 111148636 -10108894 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1432 220 302 16 16 chr12 111148724 111148788 -10108742 + ID_B1 SINE B4 76 139 -85 2 1432 276 340 20 10 chr12 111148735 111148833 -10108697 + PB1D10 SINE Alu 6 104 -13 2 1433 249 119 0 0 chr12 111149108 111149150 -10108380 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2 1433 330 305 0 12 chr12 111150070 111150153 -10107377 + MER81 DNA AcHobo 17 98 -16 2 1433 212 54 54 0 chr12 111153527 111153564 -10103966 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1433 183 319 69 0 chr12 111154531 111154603 -10102927 - MIRb SINE MIR -77 191 115 2 1433 1732 189 108 24 chr12 111157951 111158331 -10099199 + MTD LTR MaLR 1 412 -7 2 1433 351 0 0 0 chr12 111159153 111159192 -10098338 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1433 351 0 0 0 chr12 111159192 111159230 -10098300 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1433 578 239 15 7 chr12 111159783 111159918 -10097612 - ID_B1 SINE B4 0 224 89 2 1433 181 189 27 0 chr12 111161346 111161383 -10096147 + MIRm SINE MIR 220 257 -19 2 1433 691 336 106 21 chr12 111161693 111162127 -10095403 - MLT1D LTR MaLR -3 502 32 2 1433 428 314 16 44 chr12 111162952 111163135 -10094395 + ORR1E LTR MaLR 6 183 -176 2 1433 219 103 0 0 chr12 111163142 111163181 -10094349 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1433 235 150 33 0 chr12 111163180 111163240 -10094290 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1433 620 164 17 22 chr12 111163297 111163478 -10094052 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1433 1176 68 0 7 chr12 111164543 111164691 -10092839 - B1_Mus1 SINE Alu 0 148 2 2 1433 249 119 95 0 chr12 111164886 111164928 -10092602 + B3A SINE B2 29 74 -124 2 1433 286 248 30 8 chr12 111165158 111165184 -10092346 + polypurine Low_complexity Low_complexity 3 28 0 2 1433 1063 122 0 16 chr12 111165184 111165367 -10092163 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1433 286 248 30 8 chr12 111165367 111165474 -10092056 + GA-rich Low_complexity Low_complexity 29 138 0 2 1433 438 257 28 56 chr12 111165663 111165807 -10091723 + B3 SINE B2 72 211 -5 2 1433 273 98 0 0 chr12 111165831 111165872 -10091658 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1433 1477 203 65 27 chr12 111165974 111166344 -10091186 - ORR1C2 LTR MaLR 0 384 1 2 1433 689 294 5 21 chr12 111166577 111166598 -10090932 - B3A SINE B2 -8 190 171 2 1433 333 0 0 0 chr12 111166598 111166635 -10090895 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1433 689 294 5 21 chr12 111166635 111166804 -10090726 - B3A SINE B2 -28 170 4 2 1433 228 302 32 0 chr12 111166847 111166910 -10090620 + ORR1E LTR MaLR 276 340 -19 2 1433 595 168 123 7 chr12 111167383 111167521 -10090009 + RMER15 LTR ERVL 422 575 0 2 1433 346 302 8 41 chr12 111167568 111167689 -10089841 + MIRb SINE MIR 88 204 -64 2 1433 180 0 0 0 chr12 111168129 111168149 -10089381 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1433 1187 48 0 0 chr12 111168150 111168297 -10089233 - B1_Mus2 SINE Alu 0 147 1 2 1433 384 274 120 77 chr12 111168548 111168846 -10088684 - L1MB5 LINE L1 -789 5849 5571 2 1433 728 243 0 0 chr12 111168933 111169081 -10088449 - RSINE1 SINE B4 -15 150 3 2 1433 297 309 6 95 chr12 111169084 111169252 -10088278 - L1MB5 LINE L1 -617 5563 5411 2 1433 396 0 0 0 chr12 111169350 111169394 -10088136 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1433 307 308 108 25 chr12 111169429 111169549 -10087981 - B4A SINE B4 -62 230 101 2 1433 848 113 29 12 chr12 111169549 111169795 -10087735 + (TG)n Simple_repeat Simple_repeat 1 250 0 2 1433 313 260 0 72 chr12 111169806 111169889 -10087641 - B4A SINE B4 -205 87 11 2 1433 854 122 0 7 chr12 111169932 111170072 -10087458 + (TTC)n Simple_repeat Simple_repeat 3 141 0 2 1433 314 308 16 60 chr12 111170086 111170269 -10087261 - L1MA10 LINE L1 -3 6331 6157 2 1433 2631 26 2 213 chr12 111170294 111170783 -10086747 - RLTR10 LTR ERVK -4 386 1 2 1433 15692 24 11 39 chr12 111170785 111172783 -10084747 - RLTR10-int LTR ERVK -3 1984 41 2 1433 2631 26 2 213 chr12 111172799 111173288 -10084242 - RLTR10 LTR ERVK -4 386 1 2 1433 348 295 161 12 chr12 111173431 111173599 -10083931 + MLT2B5 LTR ERVL 10 202 -515 2 1433 286 252 124 16 chr12 111173823 111173944 -10083586 + MLT2B5 LTR ERVL 211 344 -210 2 1433 2708 294 124 34 chr12 111173949 111174543 -10082987 - L1MB5 LINE L1 -1984 4156 3505 2 1433 246 116 0 0 chr12 111174543 111174586 -10082944 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1433 2708 294 124 34 chr12 111174586 111175439 -10082091 - L1MB5 LINE L1 -2636 3504 2578 2 1433 1113 294 119 93 chr12 111175670 111176812 -10080718 - L1M4 LINE L1 -1647 4997 3826 2 1433 233 29 0 29 chr12 111176948 111176983 -10080547 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1433 701 332 69 27 chr12 111176989 111177395 -10080135 - L1M4 LINE L1 -5931 611 189 2 1433 337 311 196 41 chr12 111177402 111177552 -10079978 + Lx8 LINE L1 7172 7327 -146 2 1433 180 0 0 0 chr12 111177552 111177572 -10079958 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1433 216 0 0 0 chr12 111177578 111177602 -10079928 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1433 337 311 196 41 chr12 111177602 111177689 -10079841 + Lx8 LINE L1 7339 7454 -19 2 1433 1041 256 37 0 chr12 111177886 111178132 -10079398 - B4A SINE B4 -16 276 22 2 1433 189 336 71 13 chr12 111178257 111178411 -10079119 + MIR3 SINE MIR 42 204 -4 2 1433 692 205 134 45 chr12 111178672 111178851 -10078679 + B3 SINE B2 15 209 -7 2 1433 1143 48 7 0 chr12 111178857 111179003 -10078527 + B1_Mus1 SINE Alu 2 148 0 2 1433 22 0 0 0 chr12 111179013 111179035 -10078495 + AT_rich Low_complexity Low_complexity 1 22 0 2 1433 283 342 12 83 chr12 111179367 111179536 -10077994 + MLT1A LTR MaLR 19 175 -190 2 1433 479 103 0 25 chr12 111179666 111179746 -10077784 + (CGTG)n Simple_repeat Simple_repeat 1 78 0 2 1433 464 276 108 20 chr12 111179748 111179896 -10077634 - RSINE1 SINE B4 0 165 5 2 1433 335 169 0 0 chr12 111179899 111179970 -10077560 - L1M4 LINE L1 -2670 3476 3406 2 1433 356 273 71 18 chr12 111179986 111180098 -10077432 + MLT1A LTR MaLR 258 378 -12 2 1433 314 287 21 21 chr12 111181961 111182057 -10075473 - ID_B1 SINE B4 -37 187 92 2 1433 786 294 134 52 chr12 111182058 111182791 -10074739 - L1MEc LINE L1 -4715 1685 876 2 1433 291 54 0 0 chr12 111182791 111182828 -10074702 + (CTTAT)n Simple_repeat Simple_repeat 3 39 0 2 1433 640 246 115 0 chr12 111182831 111183014 -10074516 - ID_B1 SINE B4 -19 205 2 2 1433 786 294 134 52 chr12 111183014 111183184 -10074346 - L1MEc LINE L1 -5525 875 703 2 1433 482 350 5 44 chr12 111183196 111183399 -10074131 + RMER30 DNA MER1_type 1 195 -7 2 1433 400 278 182 105 chr12 111183438 111183995 -10073535 - L1MEc LINE L1 -5764 636 37 2 1433 432 300 98 24 chr12 111184955 111185201 -10072329 + MLT1A0 LTR MaLR 82 345 -20 2 1433 956 208 43 0 chr12 111185673 111185880 -10071650 - B3 SINE B2 0 216 1 2 1433 201 39 0 0 chr12 111186085 111186111 -10071419 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1433 197 246 136 15 chr12 111187508 111187574 -10069956 - L2 LINE L2 -365 3054 2981 2 1433 189 0 0 0 chr12 111190238 111190259 -10067271 + (CCTG)n Simple_repeat Simple_repeat 2 22 0 2 1433 790 216 72 0 chr12 111191259 111191440 -10066090 - B3A SINE B2 0 198 5 2 1433 200 34 0 33 chr12 111191451 111191481 -10066049 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1433 860 144 7 40 chr12 111191513 111191665 -10065865 - B1_Mus1 SINE Alu -1 147 1 2 1433 1297 58 41 0 chr12 111191707 111191879 -10065651 - B2_Mm2 SINE B2 -14 181 3 2 1433 2367 139 139 17 chr12 111192627 111193094 -10064436 - RLTR24 LTR ERV1 0 529 6 2 1433 272 291 71 26 chr12 111193709 111193822 -10063708 + L4 LINE RTE 1775 1892 -137 2 1433 2467 139 34 42 chr12 111193910 111194384 -10063146 - RMER16 LTR ERVK 0 533 64 2 1433 832 198 80 10 chr12 111195177 111195376 -10062154 + B4A SINE B4 80 292 0 2 1433 579 225 0 0 chr12 111195377 111195546 -10061984 + (CA)n Simple_repeat Simple_repeat 2 170 0 2 1433 261 0 0 0 chr12 111195782 111195811 -10061719 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1433 207 0 0 0 chr12 111195909 111195932 -10061598 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1433 255 31 0 0 chr12 111195932 111195963 -10061567 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1433 318 244 12 12 chr12 111196589 111196672 -10060858 + MIRm SINE MIR 80 162 -114 2 1433 507 107 0 0 chr12 111196858 111196933 -10060597 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1433 576 303 117 9 chr12 111198998 111199221 -10058309 + B4 SINE B4 40 286 -6 2 1433 221 0 35 0 chr12 111199280 111199309 -10058221 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1433 338 184 13 0 chr12 111199322 111199398 -10058132 + GA-rich Low_complexity Low_complexity 4 80 0 2 1433 216 388 0 0 chr12 111200228 111200308 -10057222 - ID4 SINE ID 0 83 4 3 1433 420 278 0 9 chr12 111200308 111200415 -10057115 - PB1D10 SINE Alu -6 111 6 3 1433 218 32 32 0 chr12 111200835 111200866 -10056664 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 3 1433 198 0 0 0 chr12 111201511 111201533 -10055997 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 3 1433 415 296 40 88 chr12 111202485 111202711 -10054819 + B4A SINE B4 2 216 -76 3 1433 459 125 0 0 chr12 111202877 111202949 -10054581 + (ACTG)n Simple_repeat Simple_repeat 4 75 0 3 1433 313 349 24 18 chr12 111203592 111203761 -10053769 + HAL1-2a_MD LINE L1 2332 2501 -523 3 1433 314 344 12 6 chr12 111203772 111203978 -10053552 + HAL1-2a_MD LINE L1 2347 2508 -516 3 1433 900 271 16 24 chr12 111204290 111204540 -10052990 + MLT1D LTR MaLR 254 501 -4 3 1433 732 323 62 17 chr12 111204913 111205266 -10052264 + L1MB5 LINE L1 5765 6133 -41 3 1433 397 248 43 26 chr12 111205309 111205425 -10052105 + B1F SINE Alu 23 140 -9 3 1433 725 330 40 25 chr12 111205454 111205728 -10051802 + B4A SINE B4 7 284 -8 3 1433 180 111 0 0 chr12 111207016 111207043 -10050487 + (CAGAG)n Simple_repeat Simple_repeat 1 27 0 3 1433 570 191 0 0 chr12 111207260 111207391 -10050139 + CT-rich Low_complexity Low_complexity 3 133 0 3 1433 366 276 231 9 chr12 111207610 111207822 -10049708 - MLT1A0 LTR MaLR -25 340 82 3 1433 234 0 0 0 chr12 111207911 111207937 -10049593 + (CG)n Simple_repeat Simple_repeat 1 26 0 3 1433 384 22 0 0 chr12 111207937 111207981 -10049549 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1433 243 261 52 93 chr12 111208359 111208456 -10049074 - B1_Mm SINE Alu -54 93 1 3 1433 391 247 287 0 chr12 111208370 111208464 -10049066 - B4 SINE B4 -95 197 64 3 1433 240 35 0 0 chr12 111208464 111208493 -10049037 + (TGGGGG)n Simple_repeat Simple_repeat 4 32 0 3 1433 391 247 287 0 chr12 111208493 111208548 -10048982 - B4 SINE B4 -229 63 6 3 1433 934 136 0 7 chr12 111208574 111208722 -10048808 - B1_Mur3 SINE Alu -2 147 1 3 1433 258 202 102 41 chr12 111208722 111208820 -10048710 - L1MD LINE L1 -636 5606 5503 3 1433 345 326 25 40 chr12 111209169 111209367 -10048163 - L1MD LINE L1 -931 5215 5021 3 1433 1106 157 27 50 chr12 111209397 111209618 -10047912 - B3 SINE B2 0 216 1 3 1433 1498 187 49 43 chr12 111210255 111210601 -10046929 + MTD LTR MaLR 27 374 -45 3 1433 187 269 19 19 chr12 111211429 111211482 -10046048 - L2b LINE L2 -14 3361 3309 3 1433 202 286 26 0 chr12 111212552 111212629 -10044901 + G-rich Low_complexity Low_complexity 5 83 0 3 1433 216 191 0 0 chr12 111212586 111212628 -10044902 + GA-rich Low_complexity Low_complexity 2 43 0 3 1433 432 0 0 0 chr12 111213071 111213119 -10044411 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1433 386 258 276 19 chr12 111214625 111214818 -10042712 + B4A SINE B4 48 290 -2 3 1433 398 321 134 16 chr12 111214866 111215119 -10042411 - MLT1B LTR MaLR -1 389 107 3 1433 542 287 125 23 chr12 111215220 111215484 -10042046 + B4 SINE B4 1 291 -1 3 1433 225 154 0 0 chr12 111215501 111215540 -10041990 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1433 938 292 99 28 chr12 111216677 111217072 -10040458 - MT2A LTR ERVL -110 423 1 3 1433 480 213 0 0 chr12 111217390 111217512 -10040018 + (TG)n Simple_repeat Simple_repeat 1 122 0 3 1433 183 100 0 0 chr12 111217554 111217584 -10039946 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1433 226 233 13 27 chr12 111218286 111218361 -10039169 + ID4 SINE ID 1 74 -9 3 1433 1154 61 0 0 chr12 111218588 111218735 -10038795 - B1_Mus1 SINE Alu 0 148 2 3 1433 926 254 43 43 chr12 111219042 111219322 -10038208 - B4A SINE B4 -12 280 1 3 1433 231 265 0 0 chr12 111219529 111219578 -10037952 + MER2 DNA MER2_type 16 64 -281 3 1433 378 304 0 4 chr12 111219592 111219708 -10037822 + B1F SINE Alu 7 120 0 3 1433 377 356 30 85 chr12 111219698 111219968 -10037562 + MER2 DNA MER2_type 69 323 -22 3 1433 574 341 41 71 chr12 111220598 111221186 -10036344 - L1M5 LINE L1 -1431 4715 4146 3 1433 270 0 0 0 chr12 111221389 111221419 -10036111 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 3 1433 266 257 17 129 chr12 111221649 111221765 -10035765 - BC1_Mm scRNA scRNA -48 104 2 3 1433 501 276 117 6 chr12 111221861 111222032 -10035498 - ID_B1 SINE B4 -7 217 28 3 1433 950 164 106 15 chr12 111222058 111222256 -10035274 - B3 SINE B2 0 216 1 3 1433 252 130 0 0 chr12 111222293 111222339 -10035191 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1433 244 267 13 0 chr12 111222431 111222506 -10035024 - L1ME1 LINE L1 -11 6413 6338 3 1433 285 345 111 5 chr12 111222968 111223175 -10034355 - L1M5 LINE L1 -589 5575 5347 3 1433 30 27 0 0 chr12 111223323 111223360 -10034170 + AT_rich Low_complexity Low_complexity 1 37 0 3 1433 898 240 10 48 chr12 111223383 111223402 -10034128 - B3A SINE B2 0 198 183 3 1433 369 0 0 0 chr12 111223402 111223443 -10034087 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1433 898 240 10 48 chr12 111223443 111223629 -10033901 - B3A SINE B2 -16 182 1 3 1433 400 320 49 53 chr12 111223804 111224088 -10033442 + B4A SINE B4 2 284 -8 3 1433 425 231 16 33 chr12 111224314 111224435 -10033095 - L1M5 LINE L1 -1314 4832 4714 3 1433 227 250 0 0 chr12 111224494 111224538 -10032992 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1433 353 255 66 29 chr12 111224538 111224700 -10032830 - B4A SINE B4 0 165 3 3 1433 848 316 43 5 chr12 111224866 111225241 -10032289 - L1ME1 LINE L1 -130 6309 5921 3 1433 412 299 165 15 chr12 111225342 111225542 -10031988 + MLT1A0 LTR MaLR 98 327 -38 3 1433 238 337 0 12 chr12 111225554 111225638 -10031892 - L1ME1 LINE L1 -503 5921 5839 3 1433 1557 17 0 0 chr12 111225763 111225943 -10031587 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1433 1431 50 0 0 chr12 111225958 111226138 -10031392 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1433 614 337 174 43 chr12 111226312 111226846 -10030684 - L1MEc LINE L1 -5525 875 272 3 1433 278 65 48 16 chr12 111227342 111227405 -10030125 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 3 1433 1022 65 58 0 chr12 111227405 111227544 -10029986 - B1_Mm SINE Alu 0 147 1 3 1433 682 187 71 7 chr12 111227546 111227686 -10029844 - B1_Mur4 SINE Alu 0 150 2 3 1433 363 261 76 111 chr12 111227686 111227720 -10029810 - B4 SINE B4 -207 85 58 3 1433 327 356 90 39 chr12 111227829 111228063 -10029467 - L1MD LINE L1 -2061 4085 3840 3 1433 412 289 25 139 chr12 111228063 111228089 -10029441 - B2_Mm2 SINE B2 -17 178 155 3 1433 507 33 0 0 chr12 111228089 111228150 -10029380 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1433 640 291 11 52 chr12 111228150 111228324 -10029206 - B3A SINE B2 -31 167 1 3 1433 1520 296 43 43 chr12 111228340 111229170 -10028360 - L1ME1 LINE L1 -2320 4086 3231 3 1433 319 319 89 83 chr12 111229185 111229523 -10028007 - L1MD3 LINE L1 -5 7990 7651 3 1433 24 0 0 0 chr12 111229577 111229601 -10027929 + AT_rich Low_complexity Low_complexity 1 24 0 3 1433 587 256 22 89 chr12 111229609 111229789 -10027741 - B3 SINE B2 -13 203 36 3 1433 204 140 19 39 chr12 111229823 111229875 -10027655 + T-rich Low_complexity Low_complexity 3 53 0 3 1433 7911 63 10 1 chr12 111229887 111231026 -10026504 - L1_Mus1 LINE L1 0 6567 5419 3 1433 1691 21 0 15 chr12 111231136 111231331 -10026199 + B2_Mm1a SINE B2 2 193 0 3 1433 368 386 54 40 chr12 111231340 111231693 -10025837 - L1ME1 LINE L1 -3289 3117 2760 3 1433 621 289 34 15 chr12 111231740 111231944 -10025586 - B3 SINE B2 -6 210 3 3 1433 191 156 0 43 chr12 111232435 111232482 -10025048 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 3 1433 1337 90 5 5 chr12 111232756 111232945 -10024585 + B2_Mm1t SINE B2 2 190 -3 3 1433 366 236 164 0 chr12 111233136 111233246 -10024284 - ID_B1 SINE B4 -1 223 96 3 1433 439 288 122 68 chr12 111233292 111233572 -10023958 - L1ME1 LINE L1 -5060 1349 1055 3 1433 1248 34 7 0 chr12 111233572 111233718 -10023812 - B1_Mm SINE Alu 0 147 1 3 1433 439 310 106 69 chr12 111233718 111233831 -10023699 - L1ME1 LINE L1 -5312 1084 954 3 1433 369 0 0 0 chr12 111233862 111233903 -10023627 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1433 1021 330 87 25 chr12 111234440 111235428 -10022102 - L1M2 LINE L1 -2648 4197 3149 3 1433 315 280 27 0 chr12 111235483 111235494 -10022036 + L1MEg LINE L1 1868 1880 -4204 3 1433 1205 75 0 0 chr12 111235494 111235641 -10021889 + B1_Mm SINE Alu 1 147 0 3 1433 315 280 27 0 chr12 111235641 111235704 -10021826 + L1MEg LINE L1 1881 1943 -4141 3 1433 387 350 24 5 chr12 111235735 111235942 -10021588 - L1M2 LINE L1 -3755 3090 2880 3 1433 793 345 24 24 chr12 111236045 111236597 -10020933 - L1M2 LINE L1 -4143 2706 2155 3 1433 793 236 78 11 chr12 111236619 111236799 -10020731 - B3A SINE B2 -6 192 1 3 1433 265 239 43 25 chr12 111236880 111237002 -10020528 - L1M2 LINE L1 -4733 2036 1909 3 1433 1047 221 9 18 chr12 111238152 111238369 -10019161 - B3 SINE B2 -1 215 1 3 1433 1109 212 20 0 chr12 111238446 111238649 -10018881 - B3 SINE B2 -9 207 1 3 1433 483 270 60 75 chr12 111239393 111239593 -10017937 + B3 SINE B2 7 203 -13 3 1433 261 293 0 0 chr12 111239595 111239653 -10017877 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1433 254 231 30 30 chr12 111239717 111239784 -10017746 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3 1433 334 191 309 0 chr12 111239894 111239978 -10017552 + URR1A DNA MER1_type 1 110 -116 3 1433 797 126 40 142 chr12 111240109 111240225 -10017305 - URR1A DNA MER1_type -11 215 107 3 1433 902 95 198 25 chr12 111240225 111240387 -10017143 + B2_Mm1a SINE B2 4 193 0 3 1433 797 126 40 142 chr12 111240387 111240446 -10017084 - URR1A DNA MER1_type -120 106 58 3 1433 240 204 0 0 chr12 111240537 111240581 -10016949 - B3 SINE B2 -172 44 1 3 1433 758 316 47 10 chr12 111240756 111241053 -10016477 + L1MDa LINE L1 109 416 -6217 3 1433 316 320 32 38 chr12 111241329 111241514 -10016016 - ORR1E LTR MaLR -169 190 7 3 1433 1509 252 77 55 chr12 111241505 111241962 -10015568 - MTE-int LTR MaLR -52 1528 1062 3 1433 204 125 0 0 chr12 111241980 111242012 -10015518 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 3 1433 1239 182 5 0 chr12 111242084 111242293 -10015237 - B3 SINE B2 0 216 7 3 1433 414 0 0 0 chr12 111242461 111242507 -10015023 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 3 1433 1670 306 85 81 chr12 111242797 111243607 -10013923 + L1_Mur3 LINE L1 1708 2570 -3310 3 1433 521 15 0 15 chr12 111243607 111243674 -10013856 + (CAAAA)n Simple_repeat Simple_repeat 4 69 0 3 1433 1670 306 85 81 chr12 111243674 111244090 -10013440 + L1_Mur3 LINE L1 2571 2996 -2884 3 1433 432 117 9 55 chr12 111244090 111244199 -10013331 + Lx4A LINE L1 6955 7058 0 3 1433 1670 306 85 81 chr12 111244199 111244731 -10012799 + L1_Mur3 LINE L1 2997 3472 -2408 3 1433 1341 168 334 1 chr12 111244738 111245232 -10012298 + RMER1A Other Other 405 1028 -2 3 1433 638 291 27 59 chr12 111245211 111245578 -10011952 + L1_Mur3 LINE L1 3446 3787 -2093 3 1433 3604 262 21 28 chr12 111245900 111246902 -10010628 + Lx9 LINE L1 6514 7508 -136 4 1433 292 288 14 0 chr12 111246905 111246978 -10010552 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1433 23 54 0 0 chr12 111246978 111247015 -10010515 + AT_rich Low_complexity Low_complexity 1 37 0 4 1433 1757 186 62 96 chr12 111247234 111247462 -10010068 - MTD LTR MaLR -14 405 201 4 1433 783 194 113 16 chr12 111247462 111247656 -10009874 - B3 SINE B2 -3 213 1 4 1433 1757 183 65 96 chr12 111247656 111247862 -10009668 - MTD LTR MaLR -219 200 1 4 1433 433 283 0 40 chr12 111248210 111248335 -10009195 + ID_B1 SINE B4 79 198 -26 4 1433 371 341 56 56 chr12 111248347 111248409 -10009121 + L1_Mur3 LINE L1 4345 4404 -1742 3 1433 1020 199 55 5 chr12 111248409 111248611 -10008919 + B3 SINE B2 5 216 0 4 1433 371 341 56 56 chr12 111248611 111248852 -10008678 + L1_Mur3 LINE L1 4405 4647 -1499 3 1433 416 209 35 0 chr12 111249522 111249608 -10007922 + B3 SINE B2 128 216 0 4 1433 304 326 7 58 chr12 111249712 111249849 -10007681 + L1ME1 LINE L1 4519 4648 -1498 4 1433 634 216 25 42 chr12 111251795 111251954 -10005576 + B3A SINE B2 8 160 -38 4 1433 291 54 0 0 chr12 111251954 111251991 -10005539 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1433 243 284 16 156 chr12 111251991 111252025 -10005505 + B2_Mm1t SINE B2 145 174 -19 4 1433 714 263 59 25 chr12 111252128 111252331 -10005199 - B3 SINE B2 -6 210 1 4 1433 246 260 40 27 chr12 111252358 111252433 -10005097 + L1MC LINE L1 4873 4948 -1198 4 1433 261 0 0 0 chr12 111252491 111252520 -10005010 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1433 955 137 11 0 chr12 111252612 111252787 -10004743 + (GA)n Simple_repeat Simple_repeat 2 178 0 4 1433 305 189 0 26 chr12 111252787 111252863 -10004667 + GA-rich Low_complexity Low_complexity 2 75 0 4 1433 276 280 8 56 chr12 111252916 111253042 -10004488 + L1ME1 LINE L1 5173 5292 -854 4 1433 371 287 121 48 chr12 111253067 111253316 -10004214 + L1ME1 LINE L1 5272 5538 -640 4 1433 407 292 122 48 chr12 111253383 111253736 -10003794 + L1ME1 LINE L1 5608 5986 -193 4 1433 306 295 52 35 chr12 111253894 111254010 -10003520 + B4 SINE B4 3 120 -172 4 1433 349 274 97 0 chr12 111254040 111254164 -10003366 + B3 SINE B2 81 216 0 4 1433 1308 83 3 0 chr12 111254298 111254647 -10002883 + (CA)n Simple_repeat Simple_repeat 1 350 0 4 1433 959 130 117 6 chr12 111255044 111255207 -10002323 - B2_Mm2 SINE B2 -14 181 1 4 1433 5269 110 31 42 chr12 111255224 111256114 -10001416 + L1Md_F2 LINE L1 5702 6582 0 4 1433 362 312 175 9 chr12 111256120 111256343 -10001187 + Lx9 LINE L1 5797 6056 -1588 4 1433 3413 269 92 10 chr12 111256468 111257501 -10000029 + Lx9 LINE L1 6289 7406 -238 4 1433 641 149 6 0 chr12 111257510 111257671 -9999859 + (TG)n Simple_repeat Simple_repeat 2 163 0 4 1433 420 223 0 0 chr12 111257686 111257861 -9999669 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 1433 387 213 41 0 chr12 111257862 111257984 -9999546 + (TCTG)n Simple_repeat Simple_repeat 2 128 0 4 1433 388 236 67 33 chr12 111257985 111258165 -9999365 + Lx9 LINE L1 7458 7643 -1 4 1433 377 322 72 72 chr12 111258200 111258451 -9999079 - L1MEe LINE L1 -3871 983 733 4 1433 594 275 92 15 chr12 111258477 111258673 -9998857 + B3 SINE B2 2 212 -4 4 1433 360 301 181 27 chr12 111260290 111260478 -9997052 + ID_B1 SINE B4 8 224 0 4 1433 1855 158 102 55 chr12 111260512 111260581 -9996949 + MTC LTR MaLR 1 80 -341 4 1433 1123 72 0 0 chr12 111260581 111260720 -9996810 + B1_Mus1 SINE Alu 1 139 -9 4 1433 972 88 0 0 chr12 111260720 111260856 -9996674 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 4 1433 1855 158 102 55 chr12 111260856 111261187 -9996343 + MTC LTR MaLR 81 420 -1 4 1433 619 107 26 39 chr12 111263084 111263240 -9994290 + (TCTCTG)n Simple_repeat Simple_repeat 1 154 0 4 1433 575 263 138 35 chr12 111263265 111263525 -9994005 - B4 SINE B4 -4 288 2 4 1433 628 314 17 43 chr12 111263802 111264035 -9993495 + B4A SINE B4 63 289 -3 4 1433 294 29 0 0 chr12 111264057 111264092 -9993438 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1433 213 171 24 0 chr12 111264483 111264524 -9993006 + MIR3 SINE MIR 162 203 -5 4 1433 1245 230 40 18 chr12 111265018 111265293 -9992237 + B4A SINE B4 8 288 -4 4 1433 336 48 0 0 chr12 111265297 111265339 -9992191 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1433 180 0 0 0 chr12 111265337 111265357 -9992173 + (CAT)n Simple_repeat Simple_repeat 1 20 0 4 1433 370 335 89 94 chr12 111266314 111266719 -9990811 - L1M5 LINE L1 -500 5740 5338 4 1433 801 258 91 14 chr12 111267763 111267983 -9989547 - B4 SINE B4 -55 237 1 4 1433 806 226 14 24 chr12 111268020 111268229 -9989301 + B3 SINE B2 1 207 -9 4 1433 325 306 143 31 chr12 111268441 111268664 -9988866 + L1MEc LINE L1 296 543 -5859 4 1433 215 156 44 0 chr12 111268771 111268816 -9988714 + CT-rich Low_complexity Low_complexity 3 49 0 4 1433 479 265 0 0 chr12 111268824 111268922 -9988608 - PB1D10 SINE Alu -18 99 2 4 1433 412 225 0 0 chr12 111269202 111269282 -9988248 + ID4 SINE ID 4 83 0 4 1433 324 289 64 148 chr12 111269310 111269639 -9987891 + L1MEc LINE L1 1530 1828 -4680 4 1433 1089 207 14 0 chr12 111269639 111269852 -9987678 - B3 SINE B2 0 216 1 4 1433 324 289 64 148 chr12 111269852 111269915 -9987615 + L1MEc LINE L1 1829 1889 -4619 4 1433 22 0 0 0 chr12 111270154 111270176 -9987354 + AT_rich Low_complexity Low_complexity 1 22 0 4 1433 312 27 0 0 chr12 111270202 111270239 -9987291 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 4 1433 964 287 35 19 chr12 111270250 111270509 -9987021 - B4 SINE B4 -25 267 5 4 1433 519 265 219 12 chr12 111270815 111271246 -9986284 + L1MEc LINE L1 3555 4057 -2264 4 1433 283 235 46 23 chr12 111271235 111271322 -9986208 - Lx7 LINE L1 -1547 5926 5838 4 1433 411 288 3 30 chr12 111271321 111271446 -9986084 - Lx7 LINE L1 -904 5236 5084 4 1433 537 316 49 35 chr12 111271446 111271672 -9985858 + RCHARR1 DNA MER1_type 165 393 -581 4 1433 2074 287 22 37 chr12 111271670 111271820 -9985710 + RCHARR1 DNA MER1_type 106 257 -717 4 1433 410 0 20 0 chr12 111271820 111271870 -9985660 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1433 2074 287 22 37 chr12 111271870 111271913 -9985617 + RCHARR1 DNA MER1_type 258 300 -674 4 1433 1249 154 18 31 chr12 111271913 111272141 -9985389 + URR1B DNA MER1_type 1 225 0 4 1433 2074 287 22 37 chr12 111272141 111272575 -9984955 + RCHARR1 DNA MER1_type 301 724 -250 4 1433 246 303 13 0 chr12 111272593 111272669 -9984861 + C-rich Low_complexity Low_complexity 2 78 0 4 1433 2969 144 56 81 chr12 111274360 111274950 -9982580 + RMER15 LTR ERVL 1 575 0 4 1433 327 266 21 21 chr12 111275173 111275269 -9982261 + MLT1A LTR MaLR 63 158 -216 4 1433 523 257 7 59 chr12 111275278 111275431 -9982099 + RSINE1 SINE B4 3 147 -18 4 1433 429 20 0 0 chr12 111275980 111276030 -9981500 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1433 370 287 130 30 chr12 111277057 111277226 -9980304 + MIR SINE MIR 45 230 -32 4 1433 240 312 138 28 chr12 111277327 111277508 -9980022 + ORR1E LTR MaLR 58 258 -101 4 1433 568 271 51 59 chr12 111278255 111278553 -9978977 + B4 SINE B4 3 281 -11 4 1433 537 16 0 0 chr12 111278560 111278622 -9978908 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1433 239 222 0 0 chr12 111279497 111279542 -9977988 + GA-rich Low_complexity Low_complexity 2 46 0 4 1433 585 28 0 0 chr12 111279546 111279617 -9977913 + (GGGA)n Simple_repeat Simple_repeat 4 74 0 4 1434 261 208 68 68 chr12 111280280 111280383 -9977147 + MTEa LTR MaLR 28 130 -249 4 1434 281 310 70 17 chr12 111280414 111280529 -9977001 + MTEa LTR MaLR 256 376 -3 4 1434 200 59 0 29 chr12 111280789 111280824 -9976706 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4 1434 302 267 11 0 chr12 111280903 111280993 -9976537 + (CATA)n Simple_repeat Simple_repeat 2 92 0 4 1434 486 0 0 0 chr12 111281009 111281063 -9976467 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1434 2895 59 68 26 chr12 111281663 111282047 -9975483 - MTB LTR MaLR 0 400 1 4 1434 1055 245 139 13 chr12 111282050 111282352 -9975178 - MTEa LTR MaLR -10 369 30 4 1434 449 232 43 74 chr12 111282370 111282381 -9975149 - CYRA11_Mm Unknown Y-chromosome -295 322 239 4 1434 904 147 0 14 chr12 111282381 111282526 -9975004 + URR1B DNA MER1_type 83 225 0 4 1434 501 357 93 25 chr12 111282917 111283314 -9974216 - MLT1C LTR MaLR -7 460 37 4 1434 562 198 6 23 chr12 111283688 111283864 -9973666 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 1434 197 143 36 0 chr12 111286423 111286479 -9971051 + (CAGA)n Simple_repeat Simple_repeat 2 59 0 4 1434 724 298 23 0 chr12 111286479 111286650 -9970880 - B3A SINE B2 -14 184 10 4 1434 23 33 0 0 chr12 111286728 111286758 -9970772 + AT_rich Low_complexity Low_complexity 1 30 0 4 1434 684 306 79 8 chr12 111289053 111289320 -9968210 + B4 SINE B4 7 292 0 4 1434 591 126 0 0 chr12 111289322 111289417 -9968113 + (CA)n Simple_repeat Simple_repeat 1 95 0 4 1434 426 281 41 41 chr12 111290638 111290783 -9966747 + MLT2B1 LTR ERVL 422 566 -1 4 1434 1020 242 83 105 chr12 111290891 111291282 -9966248 + MT2B LTR ERVL 1 534 -67 4 1434 1257 77 19 2 chr12 111291282 111291806 -9965724 + (TAGA)n Simple_repeat Simple_repeat 1 533 0 4 1434 1020 238 81 111 chr12 111291806 111291822 -9965708 + MT2B LTR ERVL 535 544 -57 4 1434 1204 46 35 11 chr12 111291822 111292105 -9965425 + (TAGA)n Simple_repeat Simple_repeat 1 289 0 4 1434 1020 238 81 111 chr12 111292105 111292163 -9965367 + MT2B LTR ERVL 545 598 -3 4 1434 647 307 31 69 chr12 111292997 111293287 -9964243 + B4A SINE B4 14 292 0 4 1434 871 294 32 28 chr12 111293452 111293735 -9963795 - B4 SINE B4 -8 284 1 4 1434 396 0 0 0 chr12 111293760 111293804 -9963726 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 4 1434 385 344 48 30 chr12 111293817 111293985 -9963545 + L1MEc LINE L1 162 332 -6068 4 1434 544 261 83 110 chr12 111294081 111294382 -9963148 + ORR1E LTR MaLR 20 312 -47 4 1434 1076 175 66 9 chr12 111294500 111294713 -9962817 + URR1B DNA MER1_type 1 225 0 4 1434 369 0 0 0 chr12 111295098 111295139 -9962391 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1434 404 258 38 26 chr12 111295158 111295276 -9962254 - B3A SINE B2 -78 117 5 4 1434 636 268 84 34 chr12 111295458 111295861 -9961669 + L1MEc LINE L1 1258 1741 -4674 4 1434 538 276 8 23 chr12 111295890 111296020 -9961510 + RSINE1 SINE B4 3 130 -35 4 1434 483 325 202 4 chr12 111296385 111296845 -9960685 + Lx8 LINE L1 6923 7473 0 4 1434 324 310 103 16 chr12 111296864 111297234 -9960296 + L1MEc LINE L1 2007 2419 -3981 4 1434 1018 225 9 14 chr12 111297236 111297452 -9960078 + B3 SINE B2 2 216 0 4 1434 271 324 36 27 chr12 111297720 111297831 -9959699 + RMER1C Other Other 29 140 -1202 4 1434 2363 240 118 22 chr12 111297870 111298547 -9958983 + RMER1C Other Other 601 1342 0 4 1434 378 227 59 68 chr12 111298559 111298677 -9958853 + PB1D10 SINE Alu 1 117 0 4 1434 375 365 108 21 chr12 111298692 111299073 -9958457 + L1MEc LINE L1 2439 2852 -3467 4 1434 996 300 51 71 chr12 111299104 111299325 -9958205 - MTD LTR MaLR -15 404 180 4 1434 1996 129 147 20 chr12 111299325 111299672 -9957858 - ORR1B1 LTR MaLR -3 391 1 4 1434 996 300 51 71 chr12 111299672 111299782 -9957748 - MTD LTR MaLR -240 179 78 4 1434 854 99 8 0 chr12 111299782 111299913 -9957617 + (TTTTC)n Simple_repeat Simple_repeat 2 133 0 4 1434 1167 52 0 0 chr12 111299913 111300047 -9957483 - B1_Mus1 SINE Alu -14 134 1 4 1434 996 300 51 71 chr12 111300047 111300122 -9957408 - MTD LTR MaLR -342 77 5 4 1434 676 222 27 27 chr12 111300271 111300419 -9957111 + B1_Mur1 SINE Alu 2 149 0 5 1434 252 307 0 0 chr12 111300886 111300974 -9956556 + L1MEc LINE L1 2988 3075 -3244 4 1434 314 383 80 53 chr12 111301073 111301335 -9956195 + L1M5 LINE L1 3028 3296 -2850 5 1434 665 184 260 6 chr12 111301411 111301580 -9955950 + B3 SINE B2 5 216 0 5 1434 822 242 87 125 chr12 111301824 111302216 -9955314 - MTE2a LTR MaLR 0 379 3 5 1434 678 314 23 7 chr12 111302244 111302545 -9954985 + L1MC LINE L1 3708 4013 -2133 5 1434 537 323 44 26 chr12 111302560 111302789 -9954741 + Lx8 LINE L1 6919 7151 -322 5 1434 2948 174 14 0 chr12 111303068 111303575 -9953955 + RMER20A LTR ERVK 1 514 -2 5 1434 1933 195 19 137 chr12 111303904 111304298 -9953232 - MTC LTR MaLR 0 421 81 5 1434 1108 90 0 14 chr12 111304298 111304445 -9953085 - B1_Mus2 SINE Alu -1 146 2 5 1434 1933 195 19 137 chr12 111304445 111304526 -9953004 - MTC LTR MaLR -341 80 2 5 1434 554 254 29 14 chr12 111305508 111305648 -9951882 + B3A SINE B2 2 143 -55 5 1434 345 109 0 0 chr12 111305652 111305707 -9951823 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1434 470 226 28 0 chr12 111305727 111305833 -9951697 + RLTR11A2 LTR ERVK 1 109 -418 5 1434 1324 169 106 14 chr12 111305832 111306115 -9951415 + RLTR11A2 LTR ERVK 219 527 0 5 1434 432 0 0 0 chr12 111306213 111306261 -9951269 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1434 1078 266 86 14 chr12 111307334 111307612 -9949918 + MTE2b LTR MaLR 3 300 -79 5 1434 1648 211 101 16 chr12 111307626 111308012 -9949518 + MTD LTR MaLR 1 419 0 5 1434 374 136 39 137 chr12 111308012 111308055 -9949475 + MTE2b LTR MaLR 297 333 -46 5 1434 2128 190 101 102 chr12 111308055 111308641 -9948889 - RMER4B LTR ERVK 0 585 1 5 1434 374 136 39 137 chr12 111308641 111308689 -9948841 + MTE2b LTR MaLR 334 378 -1 5 1434 183 376 9 27 chr12 111308876 111308988 -9948542 + MIRb SINE MIR 135 244 -24 5 1434 887 224 5 48 chr12 111309176 111309382 -9948148 + B3A SINE B2 2 198 0 5 1434 584 308 90 61 chr12 111309585 111309950 -9947580 + MLT1A LTR MaLR 3 374 0 5 1434 601 242 243 30 chr12 111309983 111310287 -9947243 + MTEb LTR MaLR 1 369 -10 5 1434 1371 296 100 28 chr12 111310294 111310822 -9946708 + MTEb-int LTR MaLR 1 566 -1014 5 1434 1656 220 83 38 chr12 111310823 111311362 -9946168 - L1_Mur3 LINE L1 -700 5180 4596 5 1434 21 0 0 0 chr12 111311446 111311467 -9946063 + AT_rich Low_complexity Low_complexity 1 21 0 5 1434 3100 276 42 33 chr12 111311594 111312471 -9945059 + MTEb-int LTR MaLR 694 1578 -2 5 1434 905 262 34 45 chr12 111312473 111312741 -9944789 + MTEb LTR MaLR 1 265 -114 5 1434 491 203 37 117 chr12 111313079 111313241 -9944289 + MTEb LTR MaLR 231 379 0 5 1434 2396 122 3 9 chr12 111313345 111313693 -9943837 + ORR1A1 LTR MaLR 1 346 0 5 1434 2042 162 66 11 chr12 111313846 111314208 -9943322 - ORR1C2 LTR MaLR -2 382 1 5 1434 249 338 90 19 chr12 111314459 111314670 -9942860 + L1MB4 LINE L1 5932 6157 -23 5 1434 276 30 0 0 chr12 111314841 111314874 -9942656 + (CACCAT)n Simple_repeat Simple_repeat 4 36 0 5 1434 378 42 0 0 chr12 111315816 111315864 -9941666 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1434 531 281 103 68 chr12 111316805 111317073 -9940457 + Lx9 LINE L1 7060 7351 -293 5 1434 687 84 0 0 chr12 111317073 111317168 -9940362 + (GA)n Simple_repeat Simple_repeat 1 95 0 5 1434 531 281 103 68 chr12 111317168 111317239 -9940291 + Lx9 LINE L1 7352 7411 -233 5 1434 1578 242 48 38 chr12 111317590 111318066 -9939464 - MER44B DNA MER2_type 0 550 70 5 1434 4536 235 65 54 chr12 111318494 111319776 -9937754 - ORR1C1-int LTR MaLR -97 1866 5 5 1434 405 138 0 0 chr12 111319825 111319890 -9937640 - ORR1C1 LTR MaLR -313 65 1 5 1434 528 224 57 50 chr12 111319901 111320042 -9937488 + B4 SINE B4 133 274 -18 5 1434 423 0 0 0 chr12 111320070 111320117 -9937413 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1434 384 308 15 0 chr12 111322360 111322490 -9935040 + L1MB3 LINE L1 5949 6080 -103 5 1434 450 158 51 23 chr12 111322652 111322784 -9934746 + L1MA6 LINE L1 6073 6207 -93 5 1434 453 355 94 22 chr12 111324548 111324824 -9932706 - MLT1A0 LTR MaLR -65 300 5 5 1434 243 260 76 51 chr12 111324741 111324875 -9932655 + MER67C LTR ERV1 370 507 -204 5 1434 1941 78 33 164 chr12 111324875 111325242 -9932288 + ORR1A2 LTR MaLR 1 319 -8 5 1434 341 320 70 56 chr12 111325903 111326118 -9931412 - Tigger7 DNA MER2_type -10 2481 2264 5 1434 571 358 0 20 chr12 111326140 111326297 -9931233 - Tigger7 DNA MER2_type -2253 238 93 5 1434 224 30 0 29 chr12 111326297 111326331 -9931199 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5 1434 571 356 0 18 chr12 111326331 111326423 -9931107 - Tigger7 DNA MER2_type -2399 92 1 5 1434 194 302 107 38 chr12 111326443 111326574 -9930956 - MIRb SINE MIR -127 141 2 5 1434 457 328 51 43 chr12 111326802 111327092 -9930438 - B4 SINE B4 -18 274 2 5 1434 889 263 70 108 chr12 111328607 111328948 -9928582 + MTE2a LTR MaLR 1 328 -51 5 1434 359 236 64 11 chr12 111329033 111329127 -9928403 - MTE2a LTR MaLR -2 377 279 5 1434 403 283 6 12 chr12 111329167 111329328 -9928202 - L1M2 LINE L1 -805 5495 5336 5 1434 706 197 27 40 chr12 111329328 111329476 -9928054 + B1_Mus2 SINE Alu 1 146 -1 5 1434 1233 78 0 0 chr12 111329479 111329658 -9927872 + (GGA)n Simple_repeat Simple_repeat 2 180 0 5 1434 284 319 4 169 chr12 111329658 111329680 -9927850 - L1M2 LINE L1 -573 5307 5307 5 1434 1308 68 0 0 chr12 111329680 111330169 -9927361 + (GGA)n Simple_repeat Simple_repeat 1 489 0 5 1434 419 308 47 2 chr12 111330169 111330383 -9927147 - L1M2 LINE L1 -805 5338 5118 5 1434 815 172 0 0 chr12 111330593 111330727 -9926803 + B1_Mur1 SINE Alu 14 147 -2 5 1434 470 320 69 41 chr12 111331224 111331442 -9926088 + MER58A DNA MER1_type 1 224 0 5 1434 180 0 0 0 chr12 111332602 111332622 -9924908 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1434 939 262 12 71 chr12 111332649 111332904 -9924626 - B4 SINE B4 -51 241 2 5 1434 237 361 9 9 chr12 111333011 111333120 -9924410 - MLT1C LTR MaLR -27 440 332 5 1434 925 188 33 0 chr12 111333132 111333320 -9924210 - URR1A DNA MER1_type -3 223 1 5 1434 366 61 0 0 chr12 111333430 111333479 -9924051 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1434 180 0 0 0 chr12 111333485 111333505 -9924025 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1434 2797 35 0 0 chr12 111333526 111333864 -9923666 - ORR1A1 LTR MaLR -8 338 1 5 1434 241 366 0 0 chr12 111333892 111333963 -9923567 + (CACG)n Simple_repeat Simple_repeat 4 74 0 5 1434 503 274 114 30 chr12 111333981 111334113 -9923417 - RSINE1 SINE B4 -20 145 3 5 1434 293 299 123 23 chr12 111334691 111334821 -9922709 + RMER15 LTR ERVL 432 574 -1 5 1434 1012 244 14 45 chr12 111335035 111335322 -9922208 - B4A SINE B4 -14 278 1 5 1434 270 0 0 0 chr12 111335682 111335712 -9921818 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1434 1010 132 10 55 chr12 111336121 111336322 -9921208 - MusHAL1 LINE L1 -1674 1038 847 5 1434 889 124 72 56 chr12 111336338 111336470 -9921060 + Lx2 LINE L1 6815 6952 -45 5 1434 3350 48 5 0 chr12 111336470 111336864 -9920666 - MTA_Mm LTR MaLR 0 396 1 5 1434 889 124 72 56 chr12 111336864 111336911 -9920619 + Lx2 LINE L1 6953 6997 0 5 1434 310 167 106 0 chr12 111337052 111337118 -9920412 - MER53 DNA hAT -79 114 42 5 1434 1111 301 144 11 chr12 111337594 111338390 -9919140 - L1MEc LINE L1 -4537 1863 962 5 1434 633 217 0 0 chr12 111338402 111338517 -9919013 - B1_Mur3 SINE Alu -7 142 28 5 1434 218 200 0 0 chr12 111338520 111338570 -9918960 + A-rich Low_complexity Low_complexity 1 50 0 5 1434 1254 65 0 35 chr12 111338630 111338918 -9918612 + (TAGA)n Simple_repeat Simple_repeat 1 277 0 5 1434 716 284 148 67 chr12 111338948 111339608 -9917922 - L1MEc LINE L1 -5540 860 147 5 1434 265 275 14 14 chr12 111339654 111339724 -9917806 + ID4_ SINE ID 3 72 -11 5 1434 390 42 0 0 chr12 111339895 111339943 -9917587 + (CATA)n Simple_repeat Simple_repeat 3 50 0 5 1434 334 226 28 56 chr12 111340012 111340083 -9917447 - B3 SINE B2 0 216 147 5 1434 396 0 0 0 chr12 111340083 111340127 -9917403 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1434 334 226 28 56 chr12 111340127 111340163 -9917367 - B3 SINE B2 -70 146 112 5 1434 835 301 15 18 chr12 111340251 111340525 -9917005 - B4 SINE B4 -18 274 2 5 1434 1997 258 71 24 chr12 111340637 111341300 -9916230 - L1_Mur3 LINE L1 -690 5489 4755 5 1434 784 242 49 54 chr12 111341677 111341900 -9915630 - ID_B1 SINE B4 0 224 3 5 1434 339 298 47 19 chr12 111341913 111342149 -9915381 - L1MEg LINE L1 -1280 5039 4799 5 1434 317 241 12 12 chr12 111342174 111342254 -9915276 + Lx9 LINE L1 7073 7152 -492 5 1434 724 87 7 80 chr12 111342283 111342421 -9915109 + BC1_Mm scRNA scRNA 2 129 -23 5 1434 343 220 25 25 chr12 111342661 111342782 -9914748 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 5 1434 447 179 7 14 chr12 111342860 111343002 -9914528 + (TCTA)n Simple_repeat Simple_repeat 1 141 0 5 1434 236 291 133 11 chr12 111343642 111343823 -9913707 - L1MEg LINE L1 -4293 2107 1905 5 1434 293 297 36 12 chr12 111344026 111344193 -9913337 - L1MEg LINE L1 -4733 1682 1512 5 1434 461 127 13 0 chr12 111344208 111344287 -9913243 + (GGGAGA)n Simple_repeat Simple_repeat 5 84 0 5 1434 506 228 117 58 chr12 111344527 111344681 -9912849 + RSINE1 SINE B4 3 165 0 5 1434 215 225 0 0 chr12 111344681 111344721 -9912809 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1434 699 340 155 42 chr12 111345006 111345125 -9912405 - L1MEg LINE L1 -4313 1771 1615 5 1434 4063 149 61 7 chr12 111345125 111345842 -9911688 + RMER6A LTR ERVK 1 756 0 5 1434 699 340 155 42 chr12 111345842 111346419 -9911111 - L1MEg LINE L1 -4470 1614 996 5 1434 482 271 15 15 chr12 111346551 111346686 -9910844 + MIR SINE MIR 101 235 -27 5 1434 1233 205 182 173 chr12 111346845 111347371 -9910159 - MT2A LTR ERVL -2 531 1 5 1434 674 260 3 17 chr12 111347643 111347949 -9909581 + (GCCTAA)n Simple_repeat Simple_repeat 1 301 0 5 1434 485 186 153 48 chr12 111348041 111348106 -9909424 + MTD LTR MaLR 282 359 -60 5 1434 1262 200 177 37 chr12 111348106 111348433 -9909097 - ORR1D1 LTR MaLR 0 374 2 5 1434 485 186 153 48 chr12 111348433 111348491 -9909039 + MTD LTR MaLR 360 418 -1 5 1434 230 330 32 21 chr12 111350935 111351028 -9906502 - MTEa LTR MaLR -8 351 258 5 1434 339 273 34 0 chr12 111351317 111351405 -9906125 - MTEa LTR MaLR -287 92 2 5 1434 390 281 111 17 chr12 111352933 111353114 -9904416 - B3A SINE B2 0 198 1 5 1434 252 0 0 0 chr12 111353554 111353582 -9903948 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1434 378 0 0 0 chr12 111353582 111353623 -9903907 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1434 342 0 0 0 chr12 111353751 111353789 -9903741 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1434 270 81 0 0 chr12 111354801 111354838 -9902692 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 5 1434 195 361 70 22 chr12 111355133 111355303 -9902227 + MIRc SINE MIR 50 225 -37 5 1434 297 0 0 0 chr12 111356704 111356737 -9900793 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1434 306 73 0 0 chr12 111356755 111356796 -9900734 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 6 1434 239 275 138 32 chr12 111356796 111356890 -9900640 - PB1D10 SINE Alu -13 104 1 6 1434 394 321 37 112 chr12 111357120 111357334 -9900196 + MER20 DNA MER1_type 22 219 0 6 1434 297 145 26 13 chr12 111357386 111357463 -9900067 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 6 1434 202 197 46 69 chr12 111357477 111357608 -9899922 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 6 1434 1080 38 0 0 chr12 111357643 111357776 -9899754 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 6 1434 387 285 91 65 chr12 111358017 111358171 -9899359 - B4A SINE B4 -6 159 1 6 1434 896 243 24 14 chr12 111358436 111358649 -9898881 - MER58A DNA MER1_type 0 224 10 6 1434 329 316 0 50 chr12 111359051 111359151 -9898379 - RMER15 LTR ERVL -110 465 371 6 1434 274 270 16 0 chr12 111359158 111359221 -9898309 - Lx8 LINE L1 -247 7226 7163 6 1434 369 0 0 0 chr12 111359245 111359286 -9898244 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1434 2191 98 65 0 chr12 111359771 111360078 -9897452 - ORR1A2 LTR MaLR 0 327 1 6 1434 638 308 42 28 chr12 111361668 111361952 -9895578 - B4 SINE B4 -4 288 1 6 1434 355 301 50 118 chr12 111363168 111363447 -9894083 - B4 SINE B4 0 292 33 6 1434 210 304 122 26 chr12 111363496 111363611 -9893919 - MIRb SINE MIR -129 139 14 6 1434 181 277 130 58 chr12 111364379 111364448 -9893082 + L3 LINE CR1 2928 3001 -1488 6 1434 228 83 62 0 chr12 111365502 111365550 -9891980 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1434 874 255 73 14 chr12 111365572 111365847 -9891683 - B4A SINE B4 0 292 2 6 1434 190 206 0 0 chr12 111365973 111366007 -9891523 + MIRc SINE MIR 24 57 -211 6 1434 26 0 0 0 chr12 111366525 111366551 -9890979 + AT_rich Low_complexity Low_complexity 1 26 0 6 1434 838 276 39 8 chr12 111366551 111366810 -9890720 + L1MA4 LINE L1 5639 5905 -395 6 1434 713 234 7 0 chr12 111366942 111367079 -9890451 - B1_Mur1 SINE Alu -6 143 6 6 1434 180 0 0 0 chr12 111367150 111367170 -9890360 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 6 1434 916 333 39 11 chr12 111367205 111367587 -9889943 + MLT1C LTR MaLR 71 463 -4 6 1434 555 277 7 54 chr12 111367641 111367790 -9889740 + RSINE1 SINE B4 3 144 -21 6 1434 238 216 59 0 chr12 111367832 111367883 -9889647 - PB1D9 SINE Alu 0 120 67 6 1434 1019 227 15 0 chr12 111367839 111368042 -9889488 - ID_B1 SINE B4 -7 217 12 6 1434 857 93 7 0 chr12 111368320 111368471 -9889059 + (TC)n Simple_repeat Simple_repeat 1 152 0 6 1434 183 268 53 53 chr12 111368636 111368711 -9888819 + MIRb SINE MIR 168 242 -26 6 1434 544 264 0 75 chr12 111369748 111369908 -9887622 + RSINE1 SINE B4 4 151 -14 6 1434 306 0 0 0 chr12 111369921 111369955 -9887575 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1434 333 0 0 0 chr12 111369955 111369991 -9887539 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1434 333 336 45 8 chr12 111370447 111370479 -9887051 - MLT2B3 LTR ERVL -417 137 1 6 1434 384 242 10 90 chr12 111370479 111370579 -9886951 - MTEa LTR MaLR -287 92 1 6 1434 569 220 21 83 chr12 111371180 111371324 -9886206 + B1_Mus2 SINE Alu 13 147 -2 6 1434 1286 92 0 5 chr12 111371722 111372294 -9885236 + (TCC)n Simple_repeat Simple_repeat 1 568 0 6 1434 1204 89 0 11 chr12 111372306 111372488 -9885042 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1434 379 317 113 27 chr12 111372506 111372691 -9884839 + L1ME2z LINE L1 616 816 -5320 6 1434 456 331 38 19 chr12 111372799 111373061 -9884469 + L1MC1 LINE L1 6048 6314 -19 6 1434 342 318 80 31 chr12 111373073 111373362 -9884168 + B4 SINE B4 1 274 -18 6 1434 253 268 0 10 chr12 111373453 111373551 -9883979 + L1ME2z LINE L1 972 1068 -5174 6 1434 2198 137 75 52 chr12 111373592 111373760 -9883770 + ORR1B1 LTR MaLR 1 148 -246 6 1434 558 0 0 0 chr12 111373760 111373822 -9883708 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1434 2198 137 75 52 chr12 111373822 111374038 -9883492 + ORR1B1 LTR MaLR 149 393 -1 6 1434 1673 192 93 13 chr12 111374218 111374593 -9882937 + MTD LTR MaLR 1 405 -14 6 1434 324 285 76 0 chr12 111374605 111374751 -9882779 + L1ME2z LINE L1 1495 1673 -4569 6 1434 1140 200 9 9 chr12 111374789 111375001 -9882529 + B3 SINE B2 3 214 -2 6 1434 557 257 38 92 chr12 111375339 111375579 -9881951 + B4A SINE B4 64 290 -2 6 1434 251 241 0 17 chr12 111375603 111375662 -9881868 + (CATA)n Simple_repeat Simple_repeat 2 59 0 6 1434 836 181 131 50 chr12 111375772 111375970 -9881560 - B3 SINE B2 -2 214 1 6 1434 1515 177 99 45 chr12 111376036 111376171 -9881359 - ORR1D1 LTR MaLR 0 374 230 6 1434 252 0 0 0 chr12 111376171 111376199 -9881331 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 6 1434 1515 177 99 45 chr12 111376199 111376418 -9881112 - ORR1D1 LTR MaLR -145 229 2 6 1434 549 248 130 16 chr12 111376569 111376815 -9880715 + L1ME2z LINE L1 2772 3045 -3101 6 1434 715 298 38 19 chr12 111376815 111377024 -9880506 + B3 SINE B2 1 213 -3 6 1434 1234 118 9 71 chr12 111377084 111377294 -9880236 + URR1B DNA MER1_type 1 197 -28 6 1434 1044 312 110 24 chr12 111377311 111377655 -9879875 + L1ME2z LINE L1 3079 3466 -2680 6 1434 499 267 14 36 chr12 111377655 111377795 -9879735 + B1F SINE Alu 1 137 -12 6 1434 1044 312 110 24 chr12 111377795 111378260 -9879270 + L1ME2z LINE L1 3467 3957 -2189 6 1434 260 286 151 59 chr12 111378380 111378618 -9878912 - Lx8 LINE L1 -2 7471 7212 6 1434 239 320 58 114 chr12 111378787 111379147 -9878383 + L1ME2z LINE L1 4165 4504 -1642 6 1434 1280 146 82 80 chr12 111379206 111379589 -9877941 + Lx2 LINE L1 6549 6999 -1 6 1434 295 291 165 0 chr12 111379753 111379856 -9877674 + B4A SINE B4 85 204 -88 6 1434 565 188 50 0 chr12 111379878 111379979 -9877551 + B1_Mur1 SINE Alu 34 139 -10 6 1434 279 232 18 0 chr12 111380035 111380091 -9877439 + B4A SINE B4 230 286 -6 6 1434 235 316 128 0 chr12 111380133 111380250 -9877280 - MER3 DNA MER1_type -77 132 1 6 1434 556 322 8 4 chr12 111380389 111380626 -9876904 + L1ME2z LINE L1 5074 5311 -835 6 1434 207 0 0 0 chr12 111380635 111380658 -9876872 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1434 544 308 87 23 chr12 111380923 111381269 -9876261 + L1ME2z LINE L1 5621 5988 -456 6 1434 630 39 0 0 chr12 111381320 111381397 -9876133 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1434 331 280 145 22 chr12 111381451 111381630 -9875900 - MLT1E LTR MaLR -4 676 476 6 1434 231 373 97 0 chr12 111381735 111381869 -9875661 - MLT1E-int LTR MaLR -730 759 613 6 1434 466 273 187 0 chr12 111381935 111382074 -9875456 - B4 SINE B4 -3 289 125 6 1434 225 352 101 57 chr12 111382247 111382491 -9875039 - MLT1E-int LTR MaLR -1198 291 37 6 1434 363 277 24 124 chr12 111382491 111382660 -9874870 - MLT1E LTR MaLR 0 653 502 6 1434 276 281 70 19 chr12 111383091 111383247 -9874283 + L1ME2z LINE L1 6252 6415 -29 6 1434 732 269 125 26 chr12 111383255 111383560 -9873970 - Lx8 LINE L1 -326 7147 6813 6 1434 405 0 0 0 chr12 111384996 111385041 -9872489 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1434 343 308 90 62 chr12 111385164 111385420 -9872110 - L1ME2z LINE L1 -558 5886 5624 6 1434 335 358 46 82 chr12 111385459 111385533 -9871997 - L1ME2z LINE L1 -721 5458 5384 6 1434 1657 169 204 0 chr12 111385533 111385881 -9871649 - MTC LTR MaLR -2 419 1 6 1434 335 358 46 82 chr12 111385881 111386001 -9871529 - L1ME2z LINE L1 -796 5383 5271 6 1434 233 316 59 39 chr12 111386052 111386256 -9871274 - L1ME2z LINE L1 -968 5178 4971 6 1434 440 339 0 0 chr12 111386536 111386645 -9870885 + B1F2 SINE Alu 3 111 -38 6 1434 245 286 0 0 chr12 111386645 111386694 -9870836 + (CG)n Simple_repeat Simple_repeat 1 49 0 6 1434 241 337 53 12 chr12 111386767 111386938 -9870592 - L1ME2z LINE L1 -1536 4610 4433 6 1434 504 338 32 0 chr12 111387003 111387160 -9870370 + RSINE1 SINE B4 4 165 0 6 1434 424 142 85 0 chr12 111387163 111387446 -9870084 + (CATA)n Simple_repeat Simple_repeat 1 307 0 6 1434 498 108 64 50 chr12 111387481 111387764 -9869766 + (CATA)n Simple_repeat Simple_repeat 1 287 0 6 1434 195 42 0 0 chr12 111387767 111387791 -9869739 + (CAA)n Simple_repeat Simple_repeat 1 24 0 6 1434 189 94 0 0 chr12 111387806 111387838 -9869692 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 6 1434 546 137 0 0 chr12 111387953 111388048 -9869482 + (CTTG)n Simple_repeat Simple_repeat 4 98 0 6 1434 369 340 107 26 chr12 111388880 111389386 -9868144 - L1MEc LINE L1 -3243 3076 2519 6 1434 305 281 115 35 chr12 111389552 111389840 -9867690 - L1MEc LINE L1 -3990 2410 2100 6 1434 511 322 98 22 chr12 111389848 111390032 -9867498 - B3A SINE B2 0 198 1 6 1434 342 0 0 0 chr12 111390175 111390213 -9867317 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 1434 339 347 85 13 chr12 111391024 111391257 -9866273 - MLT1H LTR MaLR -266 283 35 6 1434 250 241 17 0 chr12 111391285 111391343 -9866187 + MER20B DNA MER1_type 724 782 -1 6 1434 670 277 204 50 chr12 111391680 111392003 -9865527 + MLT1A0 LTR MaLR 1 373 -1 6 1434 2037 134 65 3 chr12 111392049 111392386 -9865144 + RLTR15 LTR ERVK 2 359 0 6 1434 869 302 9 4 chr12 111393967 111394200 -9863330 + B4A SINE B4 47 280 -12 6 1434 852 151 0 0 chr12 111394225 111394371 -9863159 + GA-rich Low_complexity Low_complexity 1 146 0 6 1434 698 296 97 61 chr12 111394373 111395066 -9862464 + L1MC3 LINE L1 6769 7486 -299 6 1434 311 308 65 59 chr12 111395145 111395296 -9862234 + L1MC3 LINE L1 7615 7769 -16 6 1434 321 301 87 14 chr12 111395296 111395434 -9862096 - B1F SINE Alu 0 149 2 6 1434 311 308 65 59 chr12 111395434 111395451 -9862079 + L1MC3 LINE L1 7770 7784 -1 6 1434 792 169 23 0 chr12 111395490 111395620 -9861910 + B1_Mur1 SINE Alu 3 135 -14 6 1434 309 324 6 121 chr12 111396675 111396840 -9860690 - MER20 DNA MER1_type -6 213 68 6 1434 233 253 46 120 chr12 111396908 111397016 -9860514 + Cheshire DNA MER1_type 174 273 -2147 6 1434 379 250 39 20 chr12 111397255 111397357 -9860173 - PB1D10 SINE Alu -10 107 4 6 1434 456 86 47 9 chr12 111397417 111397523 -9860007 + (TG)n Simple_repeat Simple_repeat 1 110 0 6 1434 209 226 17 17 chr12 111397552 111397669 -9859861 + (TG)n Simple_repeat Simple_repeat 2 118 0 6 1434 680 191 6 0 chr12 111397702 111397870 -9859660 + (TG)n Simple_repeat Simple_repeat 2 170 0 6 1434 241 272 36 72 chr12 111397878 111397989 -9859541 - B4A SINE B4 0 292 186 6 1434 376 346 121 21 chr12 111399976 111400377 -9857153 + Charlie4a DNA MER1_type 39 479 -29 6 1434 281 89 22 0 chr12 111400715 111400760 -9856770 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1434 633 172 8 4 chr12 111400791 111401038 -9856492 + (TG)n Simple_repeat Simple_repeat 1 247 0 6 1434 270 0 0 0 chr12 111401038 111401068 -9856462 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1434 344 243 0 14 chr12 111401069 111401140 -9856390 - ID4_ SINE ID -13 70 1 6 1434 710 226 10 125 chr12 111401171 111401363 -9856167 + B4 SINE B4 1 170 -122 6 1434 659 301 106 21 chr12 111401484 111401813 -9855717 - MLT1F LTR MaLR -12 536 180 6 1434 1176 289 73 8 chr12 111402299 111402655 -9854875 + MTE2b LTR MaLR 1 379 0 6 1434 204 179 0 0 chr12 111404278 111404317 -9853213 + GA-rich Low_complexity Low_complexity 2 40 0 6 1434 603 270 191 58 chr12 111404317 111404506 -9853024 + B4 SINE B4 7 220 -72 6 1434 405 122 0 0 chr12 111404600 111404674 -9852856 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1434 191 200 29 0 chr12 111405663 111405698 -9851832 + L2b LINE L2 3331 3366 -9 6 1434 645 286 63 21 chr12 111406070 111406161 -9851369 + B4A SINE B4 2 101 -191 6 1434 1907 218 53 21 chr12 111406161 111406672 -9850858 + RLTR11A2 LTR ERVK 1 527 0 7 1434 645 286 63 21 chr12 111406672 111406769 -9850761 + B4A SINE B4 102 197 -95 6 1434 186 43 0 0 chr12 111406842 111406865 -9850665 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1434 313 171 26 21 chr12 111407883 111407958 -9849572 + MTE2b LTR MaLR 1 73 -306 7 1434 283 282 0 0 chr12 111408023 111408094 -9849436 + MTEb LTR MaLR 309 379 0 7 1434 304 270 266 49 chr12 111408255 111408481 -9849049 + RMER13B LTR ERVK 412 686 -222 7 1434 387 0 0 0 chr12 111408506 111408549 -9848981 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1434 1085 266 36 21 chr12 111408918 111409199 -9848331 + B4 SINE B4 2 286 -6 7 1434 276 30 0 0 chr12 111409225 111409258 -9848272 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1434 779 267 77 24 chr12 111409886 111410093 -9847437 - B4A SINE B4 -74 218 1 7 1434 529 280 40 0 chr12 111410459 111410584 -9846946 + ID_B1 SINE B4 5 134 -90 7 1435 795 276 67 9 chr12 111411878 111412101 -9845429 - B4A SINE B4 -20 272 37 7 1435 915 202 2 9 chr12 111413063 111413225 -9844305 + B3A SINE B2 2 151 -47 7 1435 333 0 0 0 chr12 111413225 111413262 -9844268 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1435 560 225 29 128 chr12 111413262 111413273 -9844257 + B2_Mm2 SINE B2 139 148 -47 7 1435 1766 208 41 31 chr12 111413273 111413686 -9843844 - MTD LTR MaLR 0 419 3 7 1435 560 225 29 128 chr12 111413686 111413715 -9843815 + B2_Mm2 SINE B2 149 183 -12 7 1435 309 51 0 0 chr12 111414216 111414255 -9843275 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1435 34 42 0 0 chr12 111414796 111414844 -9842686 + AT_rich Low_complexity Low_complexity 1 48 0 7 1435 579 66 0 0 chr12 111415247 111415323 -9842207 + (TC)n Simple_repeat Simple_repeat 2 77 0 7 1435 690 271 144 44 chr12 111416595 111416865 -9840665 + RMER15 LTR ERVL 237 533 -42 7 1435 495 251 39 112 chr12 111417477 111417710 -9839820 + RMER15 LTR ERVL 5 220 -355 7 1435 542 254 197 6 chr12 111417747 111417925 -9839605 + RMER15 LTR ERVL 364 575 0 7 1435 234 105 0 0 chr12 111419065 111419103 -9838427 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1435 377 301 69 14 chr12 111419130 111419275 -9838255 - B4A SINE B4 -69 223 71 7 1435 2591 243 61 18 chr12 111419286 111420027 -9837503 - RMER1C Other Other 0 1342 570 7 1435 210 154 0 0 chr12 111420043 111420082 -9837448 + (TTG)n Simple_repeat Simple_repeat 1 39 0 7 1435 925 135 7 39 chr12 111420098 111420252 -9837278 - B1_Mur2 SINE Alu 0 149 1 7 1435 524 320 74 19 chr12 111420349 111420658 -9836872 - L1MA5 LINE L1 -194 6106 5781 7 1435 961 247 66 56 chr12 111421214 111421483 -9836047 + B4 SINE B4 2 274 -18 7 1435 234 62 0 0 chr12 111421483 111421515 -9836015 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 7 1435 961 247 66 56 chr12 111421515 111421532 -9835998 + B4 SINE B4 275 291 -1 7 1435 23 0 0 0 chr12 111422488 111422511 -9835019 + AT_rich Low_complexity Low_complexity 1 23 0 7 1435 732 23 0 0 chr12 111424325 111424411 -9833119 + (TCTCC)n Simple_repeat Simple_repeat 1 86 0 7 1435 215 170 0 21 chr12 111428251 111428299 -9829231 + (CTTA)n Simple_repeat Simple_repeat 2 48 0 7 1435 270 0 0 0 chr12 111428512 111428542 -9828988 + (TTG)n Simple_repeat Simple_repeat 3 32 0 7 1435 315 0 0 0 chr12 111429351 111429386 -9828144 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1435 549 72 0 0 chr12 111429386 111429468 -9828062 + (TG)n Simple_repeat Simple_repeat 2 84 0 7 1435 212 100 25 0 chr12 111429468 111429508 -9828022 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1435 309 180 34 0 chr12 111429511 111429600 -9827930 + (CA)n Simple_repeat Simple_repeat 1 92 0 7 1435 212 345 78 43 chr12 111429986 111430101 -9827429 + B4 SINE B4 68 186 -106 7 1435 436 239 21 93 chr12 111430014 111430111 -9827419 + PB1D10 SINE Alu 15 104 -13 7 1435 309 51 0 0 chr12 111430111 111430150 -9827380 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1435 864 29 0 0 chr12 111430824 111430927 -9826603 + (TTC)n Simple_repeat Simple_repeat 3 105 0 7 1435 315 0 0 0 chr12 111431117 111431152 -9826378 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1435 579 80 59 10 chr12 111431152 111431246 -9826284 - B1_Mm SINE Alu -8 139 40 7 1435 324 240 0 0 chr12 111431251 111431326 -9826204 + (CCTG)n Simple_repeat Simple_repeat 1 75 0 7 1435 304 0 0 82 chr12 111431326 111431387 -9826143 + (TCTCC)n Simple_repeat Simple_repeat 2 57 0 7 1435 201 74 0 0 chr12 111431480 111431507 -9826023 + (TCC)n Simple_repeat Simple_repeat 1 27 0 7 1435 1351 98 0 44 chr12 111431979 111432182 -9825348 - B2_Mm2 SINE B2 -1 194 1 7 1435 182 310 110 27 chr12 111435562 111435635 -9821895 - MIR SINE MIR -55 153 75 7 1435 579 53 0 0 chr12 111436542 111436617 -9820913 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 1435 228 285 210 96 chr12 111436728 111436895 -9820635 + B4 SINE B4 107 292 0 7 1435 952 270 70 21 chr12 111438120 111438449 -9819081 + Lx6 LINE L1 7088 7432 -28 7 1435 546 313 23 23 chr12 111438560 111438776 -9818754 + MLT2B4 LTR ERVL 80 295 -261 7 1435 367 327 97 80 chr12 111438788 111438926 -9818604 - MLT1A0 LTR MaLR -86 322 184 7 1435 591 259 212 0 chr12 111438926 111439096 -9818434 + ID_B1 SINE B4 5 210 -14 7 1435 409 253 52 49 chr12 111439096 111439263 -9818267 - MLT1A0 LTR MaLR -225 183 8 7 1435 196 279 28 42 chr12 111439669 111439740 -9817790 + L2 LINE L2 241 310 -3109 7 1435 211 243 81 0 chr12 111442164 111442238 -9815292 - MIRc SINE MIR -150 118 39 7 1435 414 0 0 0 chr12 111443660 111443706 -9813824 + (TTA)n Simple_repeat Simple_repeat 3 48 0 7 1435 247 335 169 5 chr12 111443999 111444212 -9813318 + L1MD3 LINE L1 7684 7931 -64 7 1435 723 158 0 0 chr12 111444250 111444377 -9813153 + (TA)n Simple_repeat Simple_repeat 2 128 0 7 1435 342 0 0 0 chr12 111444846 111444884 -9812646 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1435 223 307 88 87 chr12 111445005 111445156 -9812374 + MIRb SINE MIR 92 236 -32 7 1435 192 227 0 0 chr12 111445966 111446010 -9811520 - L2a LINE L2 0 3426 3383 7 1435 396 0 0 0 chr12 111446379 111446423 -9811107 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 1435 496 222 46 9 chr12 111446856 111446965 -9810565 - RSINE1 SINE B4 -44 121 9 7 1435 391 266 163 35 chr12 111447354 111447611 -9809919 + RMER10A LTR ERVL 128 417 -25 7 1435 651 168 20 47 chr12 111447615 111447765 -9809765 + RLTR11A2 LTR ERVK 377 522 -5 7 1435 1344 175 174 9 chr12 111447784 111448097 -9809433 + MTD LTR MaLR 55 404 -15 7 1435 549 0 0 0 chr12 111448631 111448692 -9808838 + (TGG)n Simple_repeat Simple_repeat 2 62 0 7 1435 283 356 57 98 chr12 111448919 111449215 -9808315 + B4 SINE B4 7 290 -2 7 1435 281 246 150 17 chr12 111449336 111449456 -9808074 - L1M5 LINE L1 -1066 5080 4945 7 1435 35 54 0 0 chr12 111449492 111449548 -9807982 + AT_rich Low_complexity Low_complexity 1 56 0 7 1435 21 36 0 0 chr12 111449636 111449664 -9807866 + AT_rich Low_complexity Low_complexity 1 28 0 7 1435 22 35 0 0 chr12 111450052 111450081 -9807449 + AT_rich Low_complexity Low_complexity 1 29 0 7 1435 700 147 6 11 chr12 111451328 111451507 -9806023 + CT-rich Low_complexity Low_complexity 2 179 0 7 1435 200 139 47 0 chr12 111451508 111451520 -9806010 + (TCTCTG)n Simple_repeat Simple_repeat 3 14 0 7 1435 381 116 0 0 chr12 111451520 111451589 -9805941 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1435 200 139 47 0 chr12 111451589 111451619 -9805911 + (TCTCTG)n Simple_repeat Simple_repeat 1 32 0 7 1435 555 16 0 0 chr12 111451626 111451690 -9805840 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1435 322 340 73 36 chr12 111452222 111452414 -9805116 + MER2 DNA MER2_type 95 293 -52 7 1435 206 200 0 52 chr12 111453836 111453894 -9803636 + C-rich Low_complexity Low_complexity 2 56 0 7 1435 266 303 35 52 chr12 111454048 111454222 -9803308 - Lx8 LINE L1 -2 7471 7301 7 1435 3620 281 22 60 chr12 111454237 111455355 -9802175 - Lx8 LINE L1 -333 7140 6065 7 1435 1331 164 4 26 chr12 111455515 111455746 -9801784 + URR1A DNA MER1_type 1 226 0 7 1435 277 203 0 33 chr12 111455777 111455838 -9801692 + tRNA-Ala-GCA tRNA tRNA 3 61 -14 7 1435 247 259 0 69 chr12 111456088 111456175 -9801355 + L1MC2 LINE L1 6244 6324 -20 7 1435 267 327 18 0 chr12 111456379 111456489 -9801041 + L1MB2 LINE L1 5556 5667 -513 7 1435 462 288 116 0 chr12 111456489 111456635 -9800895 + ID_B1 SINE B4 2 164 -60 7 1435 292 247 74 63 chr12 111456569 111456636 -9800894 + PB1D7 SINE Alu 18 86 -34 7 1435 1218 209 235 88 chr12 111456636 111457098 -9800432 + MT2B LTR ERVL 1 546 -55 7 1435 306 0 0 0 chr12 111457098 111457132 -9800398 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1435 1218 209 235 88 chr12 111457132 111457147 -9800383 + MT2B LTR ERVL 547 548 -53 7 1435 408 20 0 0 chr12 111457147 111457196 -9800334 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1435 1218 209 235 88 chr12 111457196 111457241 -9800289 + MT2B LTR ERVL 549 600 -1 7 1435 292 247 74 63 chr12 111457241 111457268 -9800262 + PB1D7 SINE Alu 87 113 -7 7 1435 280 301 198 25 chr12 111457280 111457594 -9799936 + L1MB2 LINE L1 5658 6025 -146 7 1435 6381 16 0 0 chr12 111460696 111461401 -9796129 - L1Md_A LINE L1 0 6582 5878 7 1435 210 37 0 0 chr12 111461493 111461520 -9796010 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1435 262 284 169 17 chr12 111462167 111462285 -9795245 - MLT1D LTR MaLR -288 217 82 7 1435 197 163 20 0 chr12 111462764 111462813 -9794717 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1435 247 387 5 88 chr12 111462847 111463051 -9794479 + MLT1J LTR MaLR 162 348 -164 7 1435 1486 195 182 11 chr12 111463073 111463431 -9794099 + MTD LTR MaLR 1 419 0 7 1435 713 312 46 23 chr12 111466804 111467066 -9790464 + B4A SINE B4 3 270 -22 7 1435 282 320 112 17 chr12 111468426 111468604 -9788926 - MER113A DNA MER1_type -77 237 43 7 1435 302 339 28 8 chr12 111468629 111468781 -9788749 + MIRb SINE MIR 7 158 -118 7 1435 183 42 0 0 chr12 111468783 111468807 -9788723 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 7 1435 201 289 58 24 chr12 111469981 111470078 -9787452 - MIRc SINE MIR -37 171 74 7 1435 572 0 15 0 chr12 111470164 111470232 -9787298 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1435 254 294 67 19 chr12 111472055 111472159 -9785371 + LTR16A LTR ERVL 76 184 -267 8 1435 407 327 35 47 chr12 111472492 111472533 -9784997 + ID SINE ID 36 74 -150 8 1435 601 250 0 29 chr12 111472533 111472669 -9784861 + B1_Mur2 SINE Alu 1 132 -17 8 1435 365 333 77 72 chr12 111472667 111473077 -9784453 + MLT2B3 LTR ERVL 26 505 -49 8 1435 180 0 0 0 chr12 111475816 111475836 -9781694 + (TA)n Simple_repeat Simple_repeat 2 21 0 8 1435 397 282 7 72 chr12 111476720 111476873 -9780657 + Charlie18a DNA MER1_type 193 335 -7 8 1435 591 0 132 0 chr12 111476909 111477068 -9780462 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 1435 294 257 13 39 chr12 111477106 111477183 -9780347 - BC1_Mm scRNA scRNA -76 76 2 8 1435 201 74 0 0 chr12 111477584 111477611 -9779919 + (TC)n Simple_repeat Simple_repeat 2 28 0 8 1435 414 0 0 0 chr12 111477612 111477658 -9779872 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1435 743 249 155 22 chr12 111478704 111479078 -9778452 + MT2A LTR ERVL 1 334 -159 8 1435 347 272 37 6 chr12 111479134 111479297 -9778233 + (TA)n Simple_repeat Simple_repeat 2 169 0 8 1435 273 130 0 0 chr12 111479309 111479355 -9778175 + MT2A LTR ERVL 488 533 0 8 1435 226 286 0 0 chr12 111479608 111479664 -9777866 - MLT1J LTR MaLR -341 171 116 8 1435 450 0 0 0 chr12 111480423 111480473 -9777057 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1435 290 295 0 21 chr12 111480539 111480636 -9776894 + GA-rich Low_complexity Low_complexity 2 96 0 8 1435 650 269 187 62 chr12 111483452 111483805 -9773725 + RCHARR1 DNA MER1_type 1 397 -577 8 1435 1049 180 10 25 chr12 111483812 111484011 -9773519 - B3 SINE B2 -20 196 1 8 1435 243 262 54 36 chr12 111484014 111484125 -9773405 + RCHARR1 DNA MER1_type 385 497 -477 8 1435 356 229 6 0 chr12 111484128 111484294 -9773236 + (TG)n Simple_repeat Simple_repeat 2 168 0 8 1435 363 258 0 24 chr12 111484305 111484432 -9773098 + (TCTCTG)n Simple_repeat Simple_repeat 3 126 0 8 1435 212 103 42 56 chr12 111484442 111484514 -9773016 + (TCTG)n Simple_repeat Simple_repeat 4 74 0 8 1435 1489 221 43 19 chr12 111484554 111484569 -9772961 + RCHARR1 DNA MER1_type 455 468 -506 8 1435 620 312 21 0 chr12 111484569 111484761 -9772769 - B3A SINE B2 -2 196 1 8 1435 1489 221 43 19 chr12 111484761 111485119 -9772411 + RCHARR1 DNA MER1_type 469 837 -137 8 1435 390 21 0 0 chr12 111485289 111485336 -9772194 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1435 622 185 0 17 chr12 111485336 111485517 -9772013 + (TG)n Simple_repeat Simple_repeat 2 179 0 8 1435 635 274 153 0 chr12 111485608 111485798 -9771732 - Lx8 LINE L1 -199 7274 7056 8 1435 2464 296 56 65 chr12 111485801 111486546 -9770984 - Lx8 LINE L1 -554 6919 6183 8 1435 614 309 0 26 chr12 111486546 111486699 -9770831 - RSINE1 SINE B4 -13 152 4 8 1435 2464 282 72 45 chr12 111486699 111487143 -9770387 - Lx8 LINE L1 -1291 6182 5695 8 1435 574 213 276 78 chr12 111487153 111487435 -9770095 + RCHARR1 DNA MER1_type 501 838 -136 8 1435 349 204 0 0 chr12 111490025 111490093 -9767437 - PB1 SINE Alu -66 61 1 8 1435 317 233 0 14 chr12 111490032 111490106 -9767424 - B4A SINE B4 -147 145 73 8 1435 371 309 0 0 chr12 111491399 111491509 -9766021 + (TCCA)n Simple_repeat Simple_repeat 3 112 0 8 1435 247 300 50 0 chr12 111492380 111492460 -9765070 - MIRb SINE MIR -158 110 27 8 1435 192 255 21 0 chr12 111493152 111493199 -9764331 + MIRm SINE MIR 227 274 -2 8 1435 456 250 19 83 chr12 111494936 111495093 -9762437 + MER121 Unknown Unknown 166 312 -100 8 1435 261 0 0 0 chr12 111495718 111495747 -9761783 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1435 433 174 13 13 chr12 111495748 111495899 -9761631 + (CAGAGA)n Simple_repeat Simple_repeat 2 152 0 8 1435 515 211 0 11 chr12 111495909 111496091 -9761439 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1435 341 151 0 0 chr12 111496098 111496151 -9761379 + HAL1-3A_ME LINE L1 1976 2028 -830 8 1435 1248 202 127 105 chr12 111496540 111496911 -9760619 + MTE2a LTR MaLR 1 379 0 8 1435 1771 276 131 39 chr12 111496911 111497947 -9759583 + MTE2a-int LTR MaLR 2 1448 -132 8 1435 653 239 37 0 chr12 111497989 111498152 -9759378 - B3A SINE B2 -16 182 14 8 1435 383 250 99 8 chr12 111498161 111498282 -9759248 + MTE2a-int LTR MaLR 1445 1576 -4 8 1435 938 243 60 83 chr12 111498286 111498672 -9758858 + MTE2a LTR MaLR 1 377 -2 8 1435 279 171 13 26 chr12 111498727 111498753 -9758777 + polypurine Low_complexity Low_complexity 3 27 0 8 1435 1067 134 0 6 chr12 111498753 111498933 -9758597 + (GGA)n Simple_repeat Simple_repeat 2 180 0 8 1435 279 171 13 26 chr12 111498933 111498984 -9758546 + GA-rich Low_complexity Low_complexity 28 79 0 8 1435 575 312 62 0 chr12 111500897 111501073 -9756457 + B4A SINE B4 1 187 -105 1 1435 217 252 25 93 chr12 111500983 111501101 -9756429 + PB1D9 SINE Alu 11 120 0 2 1435 227 297 232 33 chr12 111501952 111502133 -9755397 + MLT1F2 LTR MaLR 70 286 -274 3 1435 294 300 9 35 chr12 111505019 111505133 -9752397 + L1MB2 LINE L1 5829 5939 -232 4 1435 186 330 29 39 chr12 111507703 111507807 -9749723 - MIRb SINE MIR -82 186 84 5 1435 204 282 162 23 chr12 111507933 111508064 -9749466 - MIRc SINE MIR -98 170 18 6 1435 502 213 23 12 chr12 111510070 111510241 -9747289 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 7 1435 225 239 0 21 chr12 111511185 111511232 -9746298 + C-rich Low_complexity Low_complexity 4 49 0 8 1435 188 313 15 15 chr12 111511534 111511602 -9745928 - MIRb SINE MIR -175 93 26 9 1435 22 35 0 0 chr12 111516325 111516354 -9741176 + GC_rich Low_complexity Low_complexity 1 29 0 1 1435 217 154 45 15 chr12 111516414 111516480 -9741050 + (CCGCG)n Simple_repeat Simple_repeat 5 72 0 1 1435 376 216 17 25 chr12 111516634 111516836 -9740694 + (CGGGG)n Simple_repeat Simple_repeat 1 200 0 1 1435 28 71 0 0 chr12 111516866 111516922 -9740608 + GC_rich Low_complexity Low_complexity 1 56 0 1 1435 259 229 33 0 chr12 111520899 111520960 -9736570 + CT-rich Low_complexity Low_complexity 4 66 0 1 1435 646 175 14 0 chr12 111521775 111521918 -9735612 + GA-rich Low_complexity Low_complexity 2 146 0 1 1435 180 212 0 0 chr12 111522958 111522991 -9734539 - MIRm SINE MIR -124 152 120 1 1435 876 253 42 13 chr12 111523014 111523250 -9734280 + MLT1B LTR MaLR 6 248 -142 1 1435 524 66 26 0 chr12 111523805 111523881 -9733649 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 1 1435 353 248 46 66 chr12 111523885 111524036 -9733494 - MER53 DNA hAT -12 181 34 1 1435 233 278 71 97 chr12 111524160 111524420 -9733110 - MER45B DNA Tip100 -24 1016 773 2 1435 687 239 26 57 chr12 111524655 111524866 -9732664 + B3A SINE B2 1 186 -9 2 1435 277 256 60 5 chr12 111524870 111524983 -9732547 + L1M2 LINE L1 5210 5336 -976 2 1435 1339 234 82 26 chr12 111524988 111525331 -9732199 + MTEa LTR MaLR 18 379 0 2 1435 494 262 0 82 chr12 111525331 111525489 -9732041 + L1M2 LINE L1 5332 5476 -836 2 1435 745 314 50 5 chr12 111525496 111525754 -9731776 + B4 SINE B4 9 288 -4 2 1435 423 0 0 0 chr12 111525780 111525827 -9731703 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1435 377 304 107 74 chr12 111525835 111526105 -9731425 + L1M2 LINE L1 5487 5765 -526 2 1435 269 235 0 0 chr12 111526125 111526174 -9731356 + RSINE1 SINE B4 3 51 -114 2 1435 228 146 0 24 chr12 111526174 111526216 -9731314 + ORR1C1 LTR MaLR 1 41 -343 2 1435 343 188 0 29 chr12 111526252 111526356 -9731174 + C-rich Low_complexity Low_complexity 4 104 0 2 1435 1159 148 19 19 chr12 111526358 111526571 -9730959 + ORR1C1 LTR MaLR 166 378 0 2 1435 265 268 56 0 chr12 111526596 111526667 -9730863 + RSINE1 SINE B4 89 163 -2 2 1435 1769 104 50 0 chr12 111526687 111526965 -9730565 - ORR1A4 LTR MaLR -37 292 1 2 1435 1107 269 21 14 chr12 111527224 111527510 -9730020 + MTEa LTR MaLR 37 324 -55 3 1435 1131 121 0 4 chr12 111527510 111527758 -9729772 + (TTCC)n Simple_repeat Simple_repeat 1 247 0 3 1435 382 260 184 28 chr12 111527809 111528008 -9729522 - MLT2B4 LTR ERVL -287 233 1 3 1435 849 129 0 0 chr12 111528337 111528476 -9729054 + (TG)n Simple_repeat Simple_repeat 1 139 0 3 1435 1127 294 106 1 chr12 111529539 111529998 -9727532 + L1MB2 LINE L1 5481 5984 -187 3 1435 662 376 49 0 chr12 111530038 111530344 -9727186 + MLT1G3 LTR MaLR 53 373 -222 3 1435 451 301 16 80 chr12 111530447 111530635 -9726895 + B4A SINE B4 1 176 -116 3 1435 390 211 44 0 chr12 111530717 111530807 -9726723 + PB1D10 SINE Alu 23 116 -1 3 1435 252 0 0 0 chr12 111530920 111530948 -9726582 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1435 540 42 0 0 chr12 111530948 111531018 -9726512 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1435 444 259 18 9 chr12 111531511 111531620 -9725910 + PB1D10 SINE Alu 7 116 -1 4 1435 1159 143 98 0 chr12 111532631 111532834 -9724696 + URR1A DNA MER1_type 1 223 -3 4 1435 261 288 0 14 chr12 111533136 111533210 -9724320 + L1MB7 LINE L1 5913 5985 -199 4 1435 202 143 0 45 chr12 111533612 111533656 -9723874 + C-rich Low_complexity Low_complexity 1 42 0 4 1435 39 0 0 0 chr12 111534129 111534168 -9723362 + AT_rich Low_complexity Low_complexity 1 39 0 4 1435 468 0 0 0 chr12 111536277 111536329 -9721201 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1435 398 302 66 25 chr12 111536830 111537027 -9720503 + MamRep564 Unknown Unknown 13 217 -140 4 1435 527 249 202 28 chr12 111537235 111537483 -9720047 + B4 SINE B4 2 292 0 4 1435 252 134 62 173 chr12 111537553 111537634 -9719896 - MTE2b LTR MaLR -14 407 336 4 1435 2463 146 94 2 chr12 111537634 111538093 -9719437 + RMER19B LTR ERVK 1 501 -401 4 1435 1361 236 46 112 chr12 111538105 111538496 -9719034 - MTE2b LTR MaLR -14 365 1 4 1435 237 320 103 0 chr12 111538507 111538604 -9718926 + MLT1K LTR MaLR 455 561 -34 5 1435 2312 73 6 0 chr12 111538603 111538920 -9718610 - ORR1A2 LTR MaLR -8 319 1 5 1435 208 318 0 29 chr12 111538948 111539016 -9718514 - L2b LINE L2 0 3375 3310 5 1435 303 355 27 34 chr12 111539420 111539566 -9717964 + L1ME4a LINE L1 5966 6110 -14 5 1435 1517 142 134 14 chr12 111539604 111539896 -9717634 + ORR1B1 LTR MaLR 4 330 -64 5 1435 672 164 141 0 chr12 111540679 111540807 -9716723 + B1_Mus1 SINE Alu 3 148 0 5 1435 239 229 0 20 chr12 111540808 111540857 -9716673 + polypurine Low_complexity Low_complexity 3 50 0 5 1435 1105 38 23 0 chr12 111541066 111541199 -9716331 + B1_Mus1 SINE Alu 1 136 -12 5 1435 645 80 0 0 chr12 111541200 111541288 -9716242 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 5 1435 991 0 8 8 chr12 111541289 111541409 -9716121 + (GAGAA)n Simple_repeat Simple_repeat 3 122 0 5 1435 1911 109 20 0 chr12 111541409 111541703 -9715827 - Lx2B LINE L1 -906 4971 4672 6 179 5653 123 15 3 chr12 111541690 111542631 -9714899 + Lx2B LINE L1 4970 5926 -1074 6 1436 1877 128 9 62 chr12 111542631 111542971 -9714559 - RLTRETN_Mm LTR ERVK 0 322 1 6 1436 4195 128 33 11 chr12 111542971 111543326 -9714204 + Lx2B LINE L1 5927 6298 -702 6 1436 2153 42 3 111 chr12 111543326 111543696 -9713834 + RLTR10 LTR ERVK 1 330 -60 6 1436 908 39 15 15 chr12 111543811 111543941 -9713589 + RLTR10 LTR ERVK 259 388 -2 6 1436 15785 30 29 1 chr12 111544003 111545923 -9711607 + RLTR10-int LTR ERVK 11 1984 -3 6 1436 2153 42 3 111 chr12 111545925 111546295 -9711235 + RLTR10 LTR ERVK 1 330 -60 6 1436 882 62 15 15 chr12 111546395 111546527 -9711003 + RLTR10 LTR ERVK 259 390 0 6 1436 2442 208 99 14 chr12 111546527 111546666 -9710864 + Lx2B LINE L1 6293 6448 -552 6 1436 339 85 0 0 chr12 111546666 111546713 -9710817 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1436 2442 210 99 18 chr12 111546713 111547188 -9710342 + Lx2B LINE L1 6449 7058 0 6 1436 3833 41 2 76 chr12 111547326 111547851 -9709679 - L1Md_F2 LINE L1 -10 6572 6087 6 1436 3625 42 0 0 chr12 111547856 111548307 -9709223 + L1Md_F2 LINE L1 5587 6037 -545 6 1436 306 320 47 63 chr12 111549055 111549245 -9708285 + ORR1E LTR MaLR 3 189 -170 6 1436 661 205 8 0 chr12 111549356 111549478 -9708052 + ID_B1 SINE B4 81 203 -21 6 1436 265 268 28 0 chr12 111549501 111549572 -9707958 + ORR1E LTR MaLR 307 379 0 6 1436 1862 307 50 30 chr12 111549572 111550214 -9707316 + ORR1E-int LTR MaLR 1 655 -925 6 1436 668 269 63 19 chr12 111550235 111550440 -9707090 + B3 SINE B2 2 215 -1 6 1436 17403 129 69 16 chr12 111550463 111551846 -9705684 + L1_Mur2 LINE L1 579 2049 -3828 7 1436 225 83 0 0 chr12 111551846 111551882 -9705648 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1436 17403 97 49 22 chr12 111551882 111553574 -9703956 + L1_Mur2 LINE L1 2050 3831 -2046 7 1436 585 0 0 0 chr12 111553574 111553639 -9703891 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 7 1436 17403 156 39 107 chr12 111553639 111555578 -9701952 + L1_Mur2 LINE L1 3832 5282 -598 7 1436 442 158 0 38 chr12 111555578 111555657 -9701873 - 4.5SRNA scRNA scRNA -1 93 18 7 1436 2598 127 30 32 chr12 111555657 111556088 -9701442 + Lx LINE L1 6225 6654 0 7 1436 17207 144 24 49 chr12 111556088 111556959 -9700571 + Lx4B LINE L1 5283 6156 -902 7 1436 2333 136 89 89 chr12 111556959 111557442 -9700088 + RMER19C LTR ERVK 1 483 -128 7 1436 691 87 141 16 chr12 111558393 111558521 -9699009 + RMER19C LTR ERVK 468 611 0 7 1436 5382 128 33 26 chr12 111558523 111559089 -9698441 + Lx4B LINE L1 6171 6737 -321 7 1436 2398 98 0 3 chr12 111559089 111559417 -9698113 - ORR1A2 LTR MaLR 0 327 1 7 1436 11231 116 75 12 chr12 111559417 111561262 -9696268 - ORR1A2-int LTR MaLR 0 1963 2 7 1436 1956 123 54 13 chr12 111561263 111561577 -9695953 - ORR1A2 LTR MaLR 0 327 1 7 1436 5382 128 33 26 chr12 111561577 111561889 -9695641 + Lx4B LINE L1 6738 7057 -1 7 1436 463 254 42 20 chr12 111561966 111562119 -9695411 + MTD LTR MaLR 4 160 -259 7 1436 833 275 0 12 chr12 111562159 111562332 -9695198 + B3A SINE B2 7 177 -21 7 1436 2166 154 42 42 chr12 111562332 111562718 -9694812 + ORR1B1 LTR MaLR 1 386 -8 8 1436 1556 235 69 25 chr12 111562749 111562935 -9694595 + MTD LTR MaLR 3 206 -213 8 1436 2279 139 43 3 chr12 111562935 111563304 -9694226 + ORR1C2 LTR MaLR 1 384 0 8 1436 1556 235 69 25 chr12 111563304 111563510 -9694020 + MTD LTR MaLR 207 412 -7 8 1436 705 274 41 68 chr12 111563974 111564193 -9693337 + MTE2a LTR MaLR 167 379 0 8 1436 192 102 20 39 chr12 111564477 111564528 -9693002 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 8 1436 364 307 78 16 chr12 111564676 111564805 -9692725 + B3A SINE B2 30 166 -32 8 1436 387 0 0 0 chr12 111564808 111564851 -9692679 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1436 372 254 81 48 chr12 111564943 111565065 -9692465 - MT2A LTR ERVL -171 362 237 8 1436 340 282 93 39 chr12 111565065 111565194 -9692336 - MTD LTR MaLR -1 418 283 8 1436 491 167 19 38 chr12 111565263 111565369 -9692161 + B3 SINE B2 57 160 -56 8 1436 239 346 13 0 chr12 111565498 111565576 -9691954 + Tigger5 DNA MER2_type 99 177 -2229 9 1436 292 342 26 9 chr12 111565602 111565717 -9691813 + Tigger5 DNA MER2_type 2290 2406 0 9 1436 445 152 76 0 chr12 111566151 111566243 -9691287 - Lx4A LINE L1 -1 7057 6959 9 1436 209 193 33 50 chr12 111566558 111566618 -9690912 + MIRc SINE MIR 117 175 -93 9 1436 903 293 119 60 chr12 111566975 111567075 -9690455 - Lx8 LINE L1 -6 7467 7342 9 1436 780 111 0 0 chr12 111567075 111567192 -9690338 + (GGA)n Simple_repeat Simple_repeat 2 118 0 9 1436 903 293 119 60 chr12 111567192 111567646 -9689884 - Lx8 LINE L1 -132 7341 6882 9 1436 273 293 10 20 chr12 111567658 111567759 -9689771 - Lx7 LINE L1 -1434 6262 6163 9 1436 1127 198 153 4 chr12 111567767 111568041 -9689489 + ORR1D1 LTR MaLR 60 374 0 9 1436 2196 289 22 17 chr12 111568041 111568675 -9688855 + Lx8 LINE L1 6340 6976 -497 9 1436 1217 278 94 32 chr12 111568778 111569686 -9687844 + Lx8 LINE L1 4755 5441 -856 9 1436 325 253 84 0 chr12 111569687 111569782 -9687748 + U6 snRNA snRNA 3 105 -2 9 1436 332 213 71 41 chr12 111569796 111569894 -9687636 + Lx8 LINE L1 6876 6976 -497 9 1436 702 265 16 6 chr12 111569928 111570110 -9687420 + Lx8 LINE L1 6074 6257 -34 9 1436 1538 296 178 46 chr12 111570152 111570610 -9686920 + L1MC LINE L1 3032 3571 -2575 1 1436 531 294 18 30 chr12 111570610 111570729 -9686801 + RSINE1 SINE B4 3 124 -41 1 1436 216 0 0 0 chr12 111570729 111570753 -9686777 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1436 531 294 18 30 chr12 111570753 111570798 -9686732 + RSINE1 SINE B4 125 165 0 1 1436 1538 296 178 46 chr12 111570798 111571954 -9685576 + L1MC LINE L1 3572 4857 -1289 1 1436 190 194 14 14 chr12 111572029 111572102 -9685428 + GA-rich Low_complexity Low_complexity 3 75 0 1 1436 240 189 0 39 chr12 111572613 111572690 -9684840 + GA-rich Low_complexity Low_complexity 1 74 0 1 1436 490 325 53 19 chr12 111572696 111572903 -9684627 + L1MC LINE L1 4954 5167 -979 1 1436 923 214 6 0 chr12 111572905 111573083 -9684447 + B3A SINE B2 4 182 -16 1 1436 661 266 204 104 chr12 111573260 111573926 -9683604 + L1MC3 LINE L1 6313 7045 -740 1 1436 298 134 15 15 chr12 111573926 111573994 -9683536 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1 1436 298 303 218 14 chr12 111574233 111574444 -9683086 + L1MC3 LINE L1 7396 7649 -136 1 1436 3470 35 2 0 chr12 111574721 111575120 -9682410 + MTB LTR MaLR 1 400 0 1 1436 1400 229 110 18 chr12 111575129 111575511 -9682019 + MTD LTR MaLR 3 419 0 1 1436 290 259 3 20 chr12 111575676 111575773 -9681757 + L1MEf LINE L1 1468 1565 -4677 1 1436 256 282 19 5 chr12 111575803 111575918 -9681612 + PB1 SINE Alu 29 144 -5 1 1436 15938 78 3 78 chr12 111576093 111578858 -9678672 + L1_Mus2 LINE L1 3563 6094 -472 1 1436 2683 34 12 44 chr12 111578858 111579196 -9678334 - IAPLTR2b LTR ERVK 0 327 1 1 1436 7289 66 12 9 chr12 111579196 111579663 -9677867 + L1_Mus2 LINE L1 6095 6565 -1 1 1436 4986 232 83 32 chr12 111579696 111581171 -9676359 + Lx9 LINE L1 6093 7642 -2 1 1436 244 269 73 9 chr12 111581615 111581724 -9675806 + L1MEf LINE L1 1848 1963 -4279 1 1436 440 361 45 0 chr12 111581735 111581890 -9675640 + RSINE1 SINE B4 2 163 -2 1 1436 429 20 0 0 chr12 111581904 111581954 -9675576 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 1 1436 300 274 28 19 chr12 111581960 111582068 -9675462 + L1MEf LINE L1 1997 2105 -4137 1 1436 796 220 169 0 chr12 111582181 111582358 -9675172 + B3 SINE B2 10 216 0 1 1436 300 334 135 8 chr12 111582479 111582726 -9674804 + L1MEf LINE L1 2398 2691 -3455 1 1436 964 185 28 11 chr12 111582942 111583122 -9674408 + URR1B DNA MER1_type 43 225 0 1 1436 775 302 24 24 chr12 111583126 111583380 -9674150 + B4A SINE B4 29 282 -10 1 1436 220 341 0 12 chr12 111583395 111583478 -9674052 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1436 1585 240 52 47 chr12 111583593 111584000 -9673530 - MTD LTR MaLR 0 419 11 1 1436 568 294 11 48 chr12 111584011 111584200 -9673330 + B3A SINE B2 28 209 -7 1 1436 254 282 134 24 chr12 111584308 111584435 -9673095 + L1MC LINE L1 4067 4207 -1939 1 1436 1053 278 160 54 chr12 111585504 111586162 -9671368 - L1M2 LINE L1 -773 5367 4597 1 1436 2370 59 75 13 chr12 111586162 111586470 -9671060 - ORR1A2 LTR MaLR 0 327 1 1 1436 11011 122 75 11 chr12 111586470 111588314 -9669216 - ORR1A2-int LTR MaLR 0 1963 1 1 1436 1768 123 119 7 chr12 111588314 111588608 -9668922 - ORR1A2 LTR MaLR 0 327 1 1 1436 1053 285 96 23 chr12 111588608 111588684 -9668846 - L1M2 LINE L1 -1493 4650 4579 1 1436 264 292 31 0 chr12 111588710 111588775 -9668755 + ID2 SINE ID 6 72 -11 1 1436 1198 61 0 0 chr12 111588831 111588978 -9668552 + B1_Mus2 SINE Alu 1 147 0 1 1436 975 262 117 37 chr12 111589046 111589423 -9668107 + RMER5 LTR ERV1 44 450 -84 1 1436 548 222 178 49 chr12 111590742 111590927 -9666603 + B3 SINE B2 2 210 -6 1 1436 204 186 0 33 chr12 111591383 111591444 -9666086 + A-rich Low_complexity Low_complexity 3 61 0 1 1436 712 168 0 48 chr12 111591630 111591755 -9665775 - PB1D9 SINE Alu 0 120 2 1 1436 1167 166 69 15 chr12 111592592 111592794 -9664736 - B3 SINE B2 -2 214 2 1 1436 23 33 0 0 chr12 111593036 111593066 -9664464 + AT_rich Low_complexity Low_complexity 1 30 0 1 1436 666 255 68 29 chr12 111593422 111593628 -9663902 + B3 SINE B2 1 214 -2 1 1436 1121 85 0 0 chr12 111593649 111593790 -9663740 + B1_Mus1 SINE Alu 1 141 -7 1 1436 416 161 12 0 chr12 111593796 111593877 -9663653 + GA-rich Low_complexity Low_complexity 1 82 0 1 1436 741 78 259 0 chr12 111594033 111594149 -9663381 - B1_Mus1 SINE Alu 0 148 3 1 1436 881 227 21 0 chr12 111594192 111594386 -9663144 + B3 SINE B2 1 198 -18 1 1436 574 76 13 0 chr12 111594535 111594627 -9662903 + B1_Mus2 SINE Alu 56 149 0 1 1436 227 352 53 53 chr12 111595049 111595181 -9662349 + MER21B LTR ERV1 30 161 -702 1 1436 13265 127 32 7 chr12 111595200 111595312 -9662218 + Lx2 LINE L1 3716 3831 -2046 1 1436 3222 14 0 34 chr12 111595312 111595702 -9661828 + L1Md_A LINE L1 6219 6582 0 1 1436 13265 119 26 11 chr12 111595702 111597805 -9659725 + Lx2 LINE L1 3832 5979 -1018 1 1436 865 309 40 62 chr12 111597802 111598175 -9659355 - Lx8 LINE L1 -184 7289 6925 1 1436 684 249 28 66 chr12 111598175 111598356 -9659174 - B4A SINE B4 -118 174 1 1 1436 5185 209 74 50 chr12 111598479 111599778 -9657752 - Lx9 LINE L1 -2 7642 6313 1 1436 288 0 0 0 chr12 111600132 111600164 -9657366 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1436 2230 67 0 35 chr12 111600688 111600998 -9656532 + IAPLTR3 LTR ERVK 28 326 0 1 1436 30 27 0 0 chr12 111601039 111601076 -9656454 + AT_rich Low_complexity Low_complexity 1 37 0 1 1436 216 0 0 0 chr12 111602195 111602219 -9655311 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1436 701 206 111 79 chr12 111602481 111602697 -9654833 - URR1A DNA MER1_type -3 223 1 1 1436 559 263 44 62 chr12 111602929 111603123 -9654407 - L1M2 LINE L1 -823 5477 5287 1 1436 1480 54 5 21 chr12 111603123 111603312 -9654218 - B2_Mm1a SINE B2 -6 187 2 1 1436 559 249 216 54 chr12 111603312 111603535 -9653995 - L1M2 LINE L1 -1014 5286 5013 1 1436 947 292 117 16 chr12 111603747 111604242 -9653288 - L1MA4 LINE L1 -217 6083 5539 1 1436 486 272 43 13 chr12 111604266 111604449 -9653081 + B3A SINE B2 4 200 -16 1 1436 474 264 9 0 chr12 111604617 111604723 -9652807 - RSINE1 SINE B4 -57 108 2 1 1436 297 0 0 0 chr12 111604730 111604763 -9652767 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1436 306 0 0 0 chr12 111604763 111604796 -9652734 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1436 594 252 77 0 chr12 111604799 111604942 -9652588 - B3A SINE B2 -31 167 14 1 1436 583 204 28 0 chr12 111604954 111605062 -9652468 - PB1D10 SINE Alu 0 117 7 1 1436 280 288 15 0 chr12 111605003 111605069 -9652461 - B4A SINE B4 -141 151 85 1 1436 300 319 41 35 chr12 111605070 111605432 -9652098 - L1M2 LINE L1 -683 5491 5125 1 1436 771 265 24 0 chr12 111605482 111605648 -9651882 - B3A SINE B2 -28 170 1 1 1436 275 95 0 0 chr12 111605668 111605710 -9651820 + B1_Mm SINE Alu 105 146 -1 1 1436 571 326 5 9 chr12 111605714 111605937 -9651593 - L1M2 LINE L1 -1043 5100 4879 1 1436 186 43 0 0 chr12 111605982 111606005 -9651525 + (TTCTG)n Simple_repeat Simple_repeat 2 24 0 1 1436 330 26 0 0 chr12 111606046 111606085 -9651445 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1 1436 268 182 55 0 chr12 111606487 111606542 -9650988 - ORR1E LTR MaLR -10 360 303 1 1436 507 281 0 23 chr12 111609934 111610065 -9647465 - ORR1E LTR MaLR -226 133 6 1 1436 260 313 30 0 chr12 111610108 111610175 -9647355 + ID4_ SINE ID 12 80 -3 1 1436 21 36 0 0 chr12 111611567 111611595 -9645935 + AT_rich Low_complexity Low_complexity 1 28 0 1 1436 243 350 41 27 chr12 111612059 111612206 -9645324 - MIRb SINE MIR -118 150 2 1 1436 21 0 0 0 chr12 111612605 111612626 -9644904 + GC_rich Low_complexity Low_complexity 1 21 0 1 1436 375 281 65 59 chr12 111613882 111614052 -9643478 + L1M5 LINE L1 5618 5788 -336 1 1436 567 199 60 12 chr12 111616354 111616522 -9641008 + Lx4B LINE L1 6883 7058 0 1 1436 994 165 71 10 chr12 111617077 111617273 -9640257 + B3 SINE B2 9 216 0 1 1436 1201 83 6 0 chr12 111617276 111617433 -9640097 + B2_Mm1a SINE B2 1 158 -35 1 1436 180 0 0 0 chr12 111617435 111617455 -9640075 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 1436 1205 81 0 0 chr12 111617540 111617688 -9639842 + B1_Mus1 SINE Alu 1 148 0 1 1436 302 250 159 34 chr12 111617924 111618109 -9639421 + MIRb SINE MIR 64 268 0 1 1436 231 314 85 9 chr12 111618928 111619034 -9638496 + L2c LINE L2 3270 3383 -4 1 1436 231 354 0 15 chr12 111619994 111620060 -9637470 - MLT1L LTR MaLR -75 535 471 1 1436 908 227 217 43 chr12 111620273 111620641 -9636889 + Lx9 LINE L1 6995 7426 -218 1 1436 414 0 0 0 chr12 111620647 111620693 -9636837 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1436 503 192 8 8 chr12 111620706 111620827 -9636703 + Lx9 LINE L1 7517 7637 -7 1 1436 1444 62 15 20 chr12 111620978 111621174 -9636356 + B2_Mm2 SINE B2 1 195 0 1 1436 339 25 0 0 chr12 111621310 111621350 -9636180 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1436 238 213 115 0 chr12 111621462 111621493 -9636037 + MT2B LTR ERVL 220 257 -344 1 1436 459 150 209 2 chr12 111621493 111621585 -9635945 + B1_Mur2 SINE Alu 1 113 -36 1 1436 423 0 0 0 chr12 111621585 111621632 -9635898 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1436 245 200 59 44 chr12 111621632 111621655 -9635875 + B1F SINE Alu 114 136 -13 1 1436 231 225 225 0 chr12 111621714 111621785 -9635745 + MLT1A1 LTR MaLR 293 379 -29 1 1436 396 0 0 0 chr12 111622210 111622254 -9635276 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1436 728 267 35 15 chr12 111622271 111622469 -9635061 - ID_B1 SINE B4 -19 205 4 1 1436 1147 149 21 0 chr12 111622610 111622798 -9634732 + B2_Mm1t SINE B2 2 193 0 1 1436 396 0 0 0 chr12 111622871 111622915 -9634615 + (CCCCG)n Simple_repeat Simple_repeat 1 44 0 1 1436 230 330 11 0 chr12 111623625 111623719 -9633811 + Charlie6 DNA MER1_type 1153 1247 -2253 1 1436 389 257 44 9 chr12 111624394 111624508 -9633022 + L1MC4 LINE L1 1607 1724 -4491 1 1436 356 326 108 17 chr12 111624877 111625173 -9632357 + L1MB4 LINE L1 5848 6170 -10 1 1436 229 315 13 27 chr12 111625829 111625904 -9631626 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 1 1436 277 316 25 0 chr12 111625978 111626057 -9631473 - ID4 SINE ID -1 82 2 1 1436 748 205 130 0 chr12 111626760 111626945 -9630585 + B3 SINE B2 2 210 -6 1 1436 435 195 13 0 chr12 111626999 111627076 -9630454 + ID4 SINE ID 6 83 0 1 1436 743 317 76 14 chr12 111627167 111627728 -9629802 + L1MB5 LINE L1 5546 6162 -12 1 1436 338 319 48 33 chr12 111627728 111627956 -9629574 - ORR1D2 LTR MaLR 0 370 83 2 1436 180 0 0 0 chr12 111628003 111628023 -9629507 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1436 1170 71 0 0 chr12 111628027 111628167 -9629363 - B1_Mus2 SINE Alu -7 140 1 2 1436 278 308 29 0 chr12 111628391 111628495 -9629035 + L1MC4 LINE L1 3429 3535 -2679 1 1436 528 16 0 0 chr12 111628496 111628557 -9628973 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1436 444 189 158 0 chr12 111628653 111628748 -9628782 - PB1D9 SINE Alu -8 112 3 2 1436 1220 48 7 0 chr12 111628894 111629040 -9628490 + B1_Mus1 SINE Alu 1 147 -1 2 1436 379 250 119 46 chr12 111629055 111629206 -9628324 + L1MC4a LINE L1 6164 6325 -1557 2 1436 404 332 72 34 chr12 111629258 111629367 -9628163 + L1M4 LINE L1 2904 3008 -3138 2 1436 276 238 108 10 chr12 111629367 111629469 -9628061 - PB1D10 SINE Alu -3 114 3 2 1436 404 332 72 34 chr12 111629469 111629627 -9627903 + L1M4 LINE L1 3009 3176 -2970 2 1436 370 207 0 68 chr12 111629627 111629715 -9627815 + ID4 SINE ID 2 83 0 2 1436 404 332 72 34 chr12 111629715 111629863 -9627667 + L1M4 LINE L1 3177 3335 -2811 2 1436 730 293 172 34 chr12 111629948 111630245 -9627285 + MTE2b LTR MaLR 42 379 0 2 1436 259 234 140 60 chr12 111630337 111630404 -9627126 + B3A SINE B2 4 84 -111 2 1436 228 67 0 0 chr12 111630404 111630434 -9627096 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1436 236 234 140 60 chr12 111630434 111630447 -9627083 + B2_Mm2 SINE B2 85 92 -103 2 1436 305 229 0 67 chr12 111630447 111630522 -9627008 + ID SINE ID 4 73 -151 2 1436 213 300 0 130 chr12 111630451 111630526 -9627004 + BC1_Mm scRNA scRNA 7 71 -81 2 1436 1242 81 0 0 chr12 111630526 111630698 -9626832 + (CA)n Simple_repeat Simple_repeat 2 173 0 2 1436 213 300 0 130 chr12 111630698 111630714 -9626816 + BC1_Mm scRNA scRNA 72 86 -66 2 1436 276 298 160 51 chr12 111630715 111630918 -9626612 + L1M4 LINE L1 3514 3739 -2401 2 1436 496 202 137 15 chr12 111630918 111631049 -9626481 + B1_Mus1 SINE Alu 1 147 -1 2 1436 276 298 160 51 chr12 111631049 111631238 -9626292 + L1M4 LINE L1 3740 3949 -2191 2 1436 1668 284 88 12 chr12 111631274 111631880 -9625650 - Lx8 LINE L1 -622 6851 6200 2 1436 260 238 16 0 chr12 111632170 111632233 -9625297 + Lx8 LINE L1 6884 6947 -526 2 1436 2941 178 27 21 chr12 111632239 111632796 -9624734 - RLTR20B2 LTR ERVK 0 560 1 2 1436 761 317 81 21 chr12 111632813 111633434 -9624096 - L1M4c LINE L1 -1373 5006 4349 2 1436 617 211 62 8 chr12 111633599 111633728 -9623802 + B1_Mus2 SINE Alu 7 142 -5 2 1436 750 23 0 0 chr12 111633729 111633817 -9623713 + (GGGAA)n Simple_repeat Simple_repeat 4 91 0 2 1436 1814 261 38 28 chr12 111633878 111634288 -9623242 + RMER5 LTR ERV1 33 454 -80 2 1436 1307 239 57 44 chr12 111634288 111634434 -9623096 - ORR1D1 LTR MaLR 0 374 244 2 1436 279 0 0 0 chr12 111634434 111634465 -9623065 + (CAGG)n Simple_repeat Simple_repeat 4 34 0 2 1436 1307 239 57 44 chr12 111634465 111634685 -9622845 - ORR1D1 LTR MaLR -131 243 4 2 1436 1814 261 38 28 chr12 111634685 111634771 -9622759 + RMER5 LTR ERV1 455 534 0 2 1436 555 310 9 9 chr12 111634792 111635020 -9622510 - L1M4c LINE L1 -2197 4179 3952 2 1436 665 299 153 31 chr12 111635050 111635719 -9621811 + L1MDa LINE L1 1150 1896 -4737 2 1436 931 261 66 10 chr12 111635748 111636066 -9621464 - L1M4c LINE L1 -3935 2441 2107 2 1436 736 177 0 0 chr12 111636101 111636214 -9621316 + B1_Mur4 SINE Alu 2 114 -36 2 1436 243 358 12 0 chr12 111636304 111636385 -9621145 - B4A SINE B4 -207 85 4 2 1436 347 258 103 0 chr12 111636471 111636626 -9620904 - L1M4c LINE L1 -4533 1945 1775 2 1436 248 220 0 20 chr12 111637185 111637236 -9620294 - MLT1B LTR MaLR -64 326 277 2 1436 1667 42 0 0 chr12 111637761 111637953 -9619577 + B2_Mm1a SINE B2 1 192 -1 2 1436 680 191 0 0 chr12 111638067 111638182 -9619348 + B1_Mur2 SINE Alu 6 120 -29 2 1436 407 250 61 116 chr12 111638231 111638412 -9619118 - MLT1B LTR MaLR -3 387 217 2 1436 676 280 66 101 chr12 111638603 111638861 -9618669 + B4A SINE B4 30 278 -14 2 1436 1154 179 9 41 chr12 111639277 111639498 -9618032 - B3 SINE B2 0 216 3 2 1436 1203 128 16 5 chr12 111639685 111639874 -9617656 + B3 SINE B2 9 199 -17 2 1436 195 129 0 0 chr12 111640599 111640630 -9616900 + (CACG)n Simple_repeat Simple_repeat 1 31 0 2 1436 355 300 18 48 chr12 111641031 111641199 -9616331 + GA-rich Low_complexity Low_complexity 1 163 0 2 1436 337 186 11 73 chr12 111641330 111641521 -9616009 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2 1436 314 232 39 39 chr12 111641542 111641672 -9615858 + (TATG)n Simple_repeat Simple_repeat 3 132 0 2 1436 213 237 0 0 chr12 111641869 111641928 -9615602 + (TATG)n Simple_repeat Simple_repeat 4 62 0 2 1436 180 0 0 0 chr12 111642024 111642044 -9615486 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1436 186 43 0 0 chr12 111642354 111642377 -9615153 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 1436 193 209 30 0 chr12 111642379 111642446 -9615084 + (TGGA)n Simple_repeat Simple_repeat 2 70 0 2 1436 240 35 0 0 chr12 111642446 111642475 -9615055 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 2 1436 473 206 0 32 chr12 111642927 111643008 -9614522 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 1436 755 299 17 54 chr12 111643008 111643305 -9614225 + B4A SINE B4 3 288 -4 2 1436 473 206 0 32 chr12 111643305 111643409 -9614121 + (CA)n Simple_repeat Simple_repeat 2 102 0 2 1436 216 220 0 20 chr12 111643409 111643460 -9614070 + (CATA)n Simple_repeat Simple_repeat 3 52 0 2 1436 284 120 0 20 chr12 111643461 111643512 -9614018 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 2 1436 238 148 18 18 chr12 111643805 111643860 -9613670 + GA-rich Low_complexity Low_complexity 3 57 0 2 1436 294 261 14 48 chr12 111644048 111644193 -9613337 + L1M3 LINE L1 2788 2927 -3219 2 1436 21 0 0 0 chr12 111644195 111644216 -9613314 + AT_rich Low_complexity Low_complexity 1 21 0 2 1436 222 37 0 0 chr12 111644271 111644298 -9613232 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1436 1938 34 4 0 chr12 111644468 111644701 -9612829 + L1Md_F3 LINE L1 6350 6583 -1 2 1436 319 223 88 9 chr12 111644788 111644901 -9612629 + L1M3 LINE L1 3225 3346 -2794 2 1436 517 232 112 0 chr12 111645188 111645313 -9612217 + RSINE1 SINE B4 2 140 -25 2 1436 234 0 0 0 chr12 111645315 111645341 -9612189 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1436 764 307 70 50 chr12 111645875 111646232 -9611298 - MTE2a LTR MaLR -7 372 9 2 1436 1081 261 5 0 chr12 111646324 111646539 -9610991 - B4A SINE B4 -4 288 73 2 1436 529 309 123 64 chr12 111646538 111647019 -9610511 - RLTR12B LTR ERVK -19 509 1 2 1436 180 0 0 0 chr12 111647200 111647220 -9610310 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 2 1436 706 132 0 0 chr12 111647223 111647337 -9610193 - B1_Mus1 SINE Alu -33 115 2 2 1436 774 195 21 129 chr12 111647643 111647884 -9609646 + B3 SINE B2 1 215 -1 2 1436 419 292 124 103 chr12 111647892 111648088 -9609442 + L1M5 LINE L1 2927 3116 -3030 2 1436 548 212 35 26 chr12 111648088 111648204 -9609326 + PB1D7 SINE Alu 1 117 -3 2 1436 419 292 124 103 chr12 111648204 111648377 -9609153 + L1M5 LINE L1 3117 3304 -2842 2 1436 413 261 73 90 chr12 111648438 111648615 -9608915 + B4A SINE B4 1 174 -118 2 1436 251 233 31 0 chr12 111648672 111648801 -9608729 + (CA)n Simple_repeat Simple_repeat 2 134 0 2 1436 189 279 0 0 chr12 111648857 111648936 -9608594 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1436 412 326 73 95 chr12 111648999 111649907 -9607623 + L1MD LINE L1 3033 3920 -2226 2 1436 664 215 100 0 chr12 111649942 111650072 -9607458 + B1_Mur2 SINE Alu 2 144 -5 2 1436 321 244 130 22 chr12 111650095 111650187 -9607343 + L1M5 LINE L1 3107 3208 -2938 2 1436 7067 49 12 4 chr12 111650271 111651682 -9605848 + L1VL4 LINE L1 401 1824 -1735 2 1436 6598 98 12 45 chr12 111651680 111652445 -9605085 + Lx2 LINE L1 5274 5996 -1001 2 1436 521 30 0 15 chr12 111652445 111652513 -9605017 + (GGGAA)n Simple_repeat Simple_repeat 3 69 0 2 1436 6598 89 18 21 chr12 111652513 111653100 -9604430 + Lx2 LINE L1 5997 6575 -422 2 1436 960 97 71 18 chr12 111653101 111653269 -9604261 + Lx LINE L1 6478 6654 0 2 1436 537 261 70 49 chr12 111653279 111653464 -9604066 + B3A SINE B2 3 191 -7 2 1436 882 253 117 8 chr12 111653464 111653703 -9603827 - RMER16 LTR ERVK -3 530 266 2 1436 348 124 158 52 chr12 111653788 111653905 -9603625 - B2_Mm2 SINE B2 -1 192 47 2 1436 1046 72 163 0 chr12 111653952 111654105 -9603425 - B2_Mm1t SINE B2 -14 179 2 2 1436 441 0 0 0 chr12 111654105 111654154 -9603376 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 2 1436 216 0 0 0 chr12 111654154 111654178 -9603352 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 1436 1131 42 7 0 chr12 111654183 111654325 -9603205 - B1_Mus1 SINE Alu 0 148 6 2 1436 265 259 21 43 chr12 111654222 111654363 -9603167 - ORR1B1-int LTR MaLR -755 754 617 2 1436 812 195 0 39 chr12 111654366 111654381 -9603149 - B1_Mur4 SINE Alu 0 150 140 2 1436 299 0 73 0 chr12 111654381 111654422 -9603108 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1436 812 195 0 39 chr12 111654422 111654561 -9602969 - B1_Mur4 SINE Alu -11 139 2 2 1436 874 204 58 11 chr12 111654586 111654774 -9602756 - B3A SINE B2 0 198 2 2 1436 346 287 34 27 chr12 111654790 111654937 -9602593 + L1M5 LINE L1 3511 3658 -2488 2 1436 1065 238 61 23 chr12 111655342 111655604 -9601926 - B4A SINE B4 -19 273 2 2 1436 365 339 81 11 chr12 111655616 111655801 -9601729 + MLT2B4 LTR ERVL 1 198 -358 2 1436 721 206 22 98 chr12 111656611 111656794 -9600736 + B4A SINE B4 124 292 0 2 1436 1271 41 0 0 chr12 111657208 111657354 -9600176 - B1_Mus2 SINE Alu 0 147 2 2 1436 242 216 127 32 chr12 111657406 111657509 -9600021 - MIRb SINE MIR -49 213 106 2 1436 805 131 35 21 chr12 111657684 111657825 -9599705 + B1_Mus1 SINE Alu 6 148 0 2 1436 2339 131 3 6 chr12 111657973 111658319 -9599211 - ORR1A1 LTR MaLR -1 345 1 2 1436 1281 111 10 16 chr12 111658978 111659170 -9598360 - B2_Mm1t SINE B2 -1 192 2 2 1436 2364 164 25 21 chr12 111659182 111659655 -9597875 - RMER6A LTR ERVK 0 756 282 2 1436 2070 150 62 7 chr12 111659639 111659960 -9597570 - RMER6A LTR ERVK -316 440 97 2 1436 468 0 0 0 chr12 111659960 111660012 -9597518 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1436 2070 150 62 7 chr12 111660012 111660107 -9597423 - RMER6A LTR ERVK -660 96 2 2 1436 775 313 48 18 chr12 111660488 111660761 -9596769 - B4A SINE B4 -4 288 8 2 1436 534 323 201 19 chr12 111660779 111661357 -9596173 + MLT-int LTR MaLR 14 696 -1039 2 1436 426 204 226 0 chr12 111661407 111661500 -9596030 + PB1D10 SINE Alu 4 117 0 2 1436 749 242 126 148 chr12 111661609 111661634 -9595896 + RMER4B LTR ERVK 1 27 -439 2 1436 2230 35 0 8 chr12 111661634 111661895 -9595635 + L1_Mus1 LINE L1 6303 6561 -6 2 1436 788 154 140 12 chr12 111661895 111661931 -9595599 + RMER4B LTR ERVK 28 62 -523 2 1436 351 0 0 0 chr12 111661931 111661970 -9595560 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1436 788 212 131 102 chr12 111661970 111662367 -9595163 + RMER4B LTR ERVK 62 449 -17 2 1436 2640 161 105 10 chr12 111662604 111663099 -9594431 - RMER15 LTR ERVL 0 575 34 3 1436 776 253 118 59 chr12 111663143 111663466 -9594064 + MLT-int LTR MaLR 1387 1728 -7 2 1436 2150 104 8 97 chr12 111663726 111664087 -9593443 - ORR1A4 LTR MaLR 0 329 1 3 1436 251 149 84 63 chr12 111664306 111664385 -9593145 - ORR1C2 LTR MaLR 0 384 293 3 1436 353 22 22 0 chr12 111664433 111664479 -9593051 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1436 200 316 94 0 chr12 111664779 111664896 -9592634 - MIRb SINE MIR -26 242 115 3 1436 596 274 7 27 chr12 111665444 111665594 -9591936 - B1_Mur2 SINE Alu 0 149 3 3 1436 28 29 0 0 chr12 111665724 111665759 -9591771 + AT_rich Low_complexity Low_complexity 1 35 0 3 1436 495 150 396 45 chr12 111665759 111665913 -9591617 - B3 SINE B2 -8 208 1 3 1436 270 0 0 0 chr12 111665971 111666001 -9591529 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 3 1436 294 29 0 0 chr12 111666190 111666225 -9591305 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 3 1436 2512 111 40 56 chr12 111666532 111666960 -9590570 - MTC LTR MaLR 0 421 1 3 1436 1256 102 16 0 chr12 111668938 111669124 -9588406 - B2_Mm2 SINE B2 -6 189 1 3 1436 885 59 0 0 chr12 111669252 111669371 -9588159 - B1_Mus2 SINE Alu 0 147 29 3 1436 233 288 40 27 chr12 111669665 111669740 -9587790 - MER115 DNA Tip100 -441 252 177 3 1436 320 324 9 18 chr12 111670598 111670711 -9586819 + B4A SINE B4 10 121 -171 3 1436 350 303 9 0 chr12 111670734 111670843 -9586687 + B4A SINE B4 182 291 -1 3 1436 1017 215 215 35 chr12 111671142 111671570 -9585960 + RLTR16 LTR ERVK 1 505 0 3 1436 546 218 218 40 chr12 111671762 111671987 -9585543 - RMER15 LTR ERVL -15 560 296 3 1436 373 332 73 62 chr12 111672149 111672438 -9585092 + MLT1B LTR MaLR 45 336 -54 3 1436 223 214 0 35 chr12 111673118 111673205 -9584325 + GA-rich Low_complexity Low_complexity 4 87 0 3 1437 2143 56 74 19 chr12 111673766 111674076 -9583454 - ORR1A2 LTR MaLR 0 327 1 3 1437 674 309 29 96 chr12 111674276 111674588 -9582942 + B4A SINE B4 2 292 0 3 1437 582 280 51 37 chr12 111675139 111675354 -9582176 - MER20 DNA MER1_type 0 219 2 3 1437 260 257 57 9 chr12 111675732 111675838 -9581692 + LTR33 LTR ERVL 387 497 -18 3 1437 372 71 0 0 chr12 111676461 111676517 -9581013 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 3 1437 332 98 0 32 chr12 111676535 111676598 -9580932 - B1_Mus2 SINE Alu 0 147 87 3 1437 2959 113 104 13 chr12 111676904 111677295 -9580235 - RMER15 LTR ERVL 0 575 155 3 1437 342 0 0 0 chr12 111677295 111677333 -9580197 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1437 2959 113 104 13 chr12 111677333 111677468 -9580062 - RMER15 LTR ERVL -421 154 1 3 1437 536 215 97 39 chr12 111677468 111677579 -9579951 - RMER15-int LTR ERVL -26 4973 4863 3 1437 1136 114 48 11 chr12 111677579 111677765 -9579765 + B2_Mm2 SINE B2 1 193 -2 3 1437 1623 212 282 36 chr12 111677765 111677980 -9579550 - RMER15-int LTR ERVL -137 4862 4571 3 1437 1948 115 46 40 chr12 111677980 111678305 -9579225 + ORR1A3 LTR MaLR 1 327 0 3 1437 9222 119 45 168 chr12 111678305 111680247 -9577283 + ORR1A3-int LTR MaLR 1 1706 -257 3 1437 1500 57 0 0 chr12 111680247 111680440 -9577090 - B2_Mm1a SINE B2 0 193 1 3 1437 9222 119 45 168 chr12 111680440 111680734 -9576796 + ORR1A3-int LTR MaLR 1707 1963 0 3 1437 2129 109 35 0 chr12 111680736 111681049 -9576481 + ORR1A3 LTR MaLR 3 326 0 3 1437 1623 212 114 36 chr12 111681049 111681295 -9576235 - RMER15-int LTR ERVL -429 4570 4318 3 1437 530 163 82 0 chr12 111681320 111681418 -9576112 + RMER15-int LTR ERVL 4567 4672 -327 3 1437 244 204 0 36 chr12 111681418 111681474 -9576056 - Lx8 LINE L1 -1096 6377 6324 3 1437 2271 241 7 24 chr12 111681484 111682029 -9575501 - RMER15-int LTR ERVL -3696 1303 768 3 1437 2570 224 17 72 chr12 111682061 111682704 -9574826 - RMER15-int LTR ERVL -4391 608 1 3 1437 2109 151 187 18 chr12 111682704 111682735 -9574795 - RMER15 LTR ERVL 0 575 532 3 1437 297 0 0 0 chr12 111682735 111682768 -9574762 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1437 2109 151 187 18 chr12 111682768 111683228 -9574302 - RMER15 LTR ERVL -44 531 1 3 1437 185 103 0 79 chr12 111685254 111685317 -9572213 + (CGGGG)n Simple_repeat Simple_repeat 5 62 0 3 1437 333 82 0 0 chr12 111685340 111685389 -9572141 + (CCG)n Simple_repeat Simple_repeat 2 50 0 3 1437 327 168 9 26 chr12 111685441 111685557 -9571973 + (CGG)n Simple_repeat Simple_repeat 2 115 0 3 1437 199 26 50 50 chr12 111686127 111686167 -9571363 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1437 675 222 72 27 chr12 111690152 111690374 -9567156 - Charlie1a DNA MER1_type -31 1424 1193 3 1437 1178 58 0 0 chr12 111690376 111690531 -9566999 + B2_Mm2 SINE B2 1 155 -40 3 1437 246 62 0 0 chr12 111690531 111690563 -9566967 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 3 1437 713 207 144 0 chr12 111690794 111690982 -9566548 - B3 SINE B2 0 216 2 3 1437 306 224 165 48 chr12 111691505 111691608 -9565922 - PB1D10 SINE Alu 0 117 3 3 1437 220 217 22 0 chr12 111691868 111691914 -9565616 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 3 1437 316 260 132 47 chr12 111692796 111692925 -9564605 - MER3 DNA MER1_type -25 184 45 3 1437 347 216 45 89 chr12 111693908 111694020 -9563510 - MER58B DNA MER1_type -17 324 218 3 1437 1164 73 18 0 chr12 111695037 111695201 -9562329 + B2_Mm2 SINE B2 27 193 -2 3 1437 356 0 23 0 chr12 111695379 111695423 -9562107 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1437 226 278 152 37 chr12 111695517 111695812 -9561718 - L1M4 LINE L1 -843 5303 4975 3 1437 654 289 125 45 chr12 111696873 111697641 -9559889 - L1MA5A LINE L1 -382 5930 5105 3 1437 377 194 211 54 chr12 111697855 111698002 -9559528 + MER20 DNA MER1_type 3 172 -47 3 1437 981 141 53 21 chr12 111699445 111699634 -9557896 - B2_Mm2 SINE B2 0 195 1 3 1437 923 50 8 0 chr12 111699854 111699975 -9557555 + (CA)n Simple_repeat Simple_repeat 2 123 0 3 1437 588 274 34 17 chr12 111701166 111701344 -9556186 - B3A SINE B2 -16 182 2 3 1437 716 204 36 60 chr12 111701464 111701631 -9555899 - RSINE1 SINE B4 0 165 3 3 1437 26 0 0 0 chr12 111701643 111701669 -9555861 + AT_rich Low_complexity Low_complexity 1 26 0 3 1437 1174 54 0 0 chr12 111701814 111701961 -9555569 + B1_Mus1 SINE Alu 1 147 -1 3 1437 237 33 0 0 chr12 111701961 111701991 -9555539 + (CAAAC)n Simple_repeat Simple_repeat 1 30 0 3 1437 525 246 14 48 chr12 111703388 111703533 -9553997 - MLT1D LTR MaLR -365 140 1 3 1437 565 241 27 14 chr12 111703555 111703702 -9553828 + B1F SINE Alu 1 149 0 3 1437 691 142 0 15 chr12 111703837 111703973 -9553557 + (TG)n Simple_repeat Simple_repeat 2 135 0 3 1437 1374 73 11 0 chr12 111704889 111705080 -9552450 - B2_Mm1t SINE B2 0 193 1 3 1437 959 56 0 0 chr12 111705864 111705989 -9551541 + B2_Mm2 SINE B2 2 126 -69 3 1437 864 221 82 0 chr12 111706054 111706249 -9551281 - B3 SINE B2 -5 211 1 3 1437 1343 90 0 5 chr12 111706256 111706446 -9551084 - B2_Mm2 SINE B2 -6 189 1 3 1437 927 303 155 16 chr12 111706559 111707225 -9550305 - L1MA6 LINE L1 0 6300 5516 3 1437 543 333 85 78 chr12 111707447 111707471 -9550059 - L1M2 LINE L1 -973 5167 5145 3 1437 2343 83 0 49 chr12 111707471 111707740 -9549790 + ORR1A2 LTR MaLR 1 269 -58 3 1437 1083 81 0 7 chr12 111707740 111707889 -9549641 + B1_Mus1 SINE Alu 1 148 0 3 1437 2343 83 0 49 chr12 111707889 111707963 -9549567 + ORR1A2 LTR MaLR 270 327 0 3 1437 1184 288 75 93 chr12 111707963 111708803 -9548727 - L1M2 LINE L1 -996 5144 4299 3 1437 266 263 53 113 chr12 111708804 111708937 -9548593 - PB1 SINE Alu -2 125 1 3 1437 243 270 0 0 chr12 111708973 111709036 -9548494 - ID4 SINE ID -18 65 3 3 1437 281 348 34 0 chr12 111709046 111709164 -9548366 - B1F SINE Alu -1 148 27 3 1437 587 133 0 0 chr12 111709320 111709410 -9548120 + B3 SINE B2 1 90 -126 3 1437 1361 201 109 26 chr12 111709428 111709775 -9547755 - ORR1C1 LTR MaLR -1 377 2 3 1437 346 259 0 12 chr12 111709792 111709878 -9547652 + B3 SINE B2 131 215 -1 3 1437 815 151 20 14 chr12 111709902 111710050 -9547480 + B1_Mur4 SINE Alu 1 149 -1 3 1437 386 250 63 14 chr12 111710099 111710241 -9547289 - L1M2 LINE L1 -1964 4179 4031 3 1437 208 309 0 0 chr12 111710277 111710332 -9547198 + CT-rich Low_complexity Low_complexity 3 57 0 3 1437 2408 131 42 31 chr12 111710343 111710768 -9546762 - RLTR23 LTR ERV1 0 430 1 3 1437 479 176 0 0 chr12 111710794 111710879 -9546651 - B1_Mur2 SINE Alu -56 93 9 3 1437 305 231 65 21 chr12 111710915 111711008 -9546522 - L1M2 LINE L1 -2247 3896 3800 3 1437 786 168 80 11 chr12 111711032 111711207 -9546323 - B2_Mm2 SINE B2 0 195 9 3 1437 186 43 0 0 chr12 111711219 111711242 -9546288 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 1437 1170 54 0 0 chr12 111711244 111711391 -9546139 - B1_Mus2 SINE Alu 0 147 1 3 1437 281 203 14 0 chr12 111711413 111711482 -9546048 - B3 SINE B2 0 216 147 3 1437 419 167 42 53 chr12 111711473 111711568 -9545962 - B1_Mur2 SINE Alu -52 97 4 3 1437 904 78 55 0 chr12 111711708 111711836 -9545694 + B1_Mus1 SINE Alu 2 136 -12 3 1437 338 274 79 9 chr12 111711905 111712019 -9545511 - L1MEg LINE L1 -5192 892 771 3 1437 561 310 13 68 chr12 111712024 111712332 -9545198 + B4A SINE B4 2 292 0 3 1437 284 317 41 47 chr12 111712338 111712510 -9545020 - RLTR21 LTR ERVK -318 1254 1084 3 1437 189 74 0 0 chr12 111712529 111712556 -9544974 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1437 573 250 29 14 chr12 111713461 111713599 -9543931 - B3 SINE B2 -1 215 76 3 1437 372 218 8 51 chr12 111713734 111713887 -9543643 - B3A SINE B2 -52 143 2 3 1437 309 51 0 0 chr12 111713905 111713944 -9543586 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1437 229 259 35 0 chr12 111713985 111714043 -9543487 - RSINE1 SINE B4 -24 141 82 3 1437 339 243 0 0 chr12 111714138 111714208 -9543322 - B4A SINE B4 -209 83 14 3 1437 215 347 0 0 chr12 111714659 111714731 -9542799 + ID2 SINE ID 2 73 -10 3 1437 553 202 0 40 chr12 111715334 111715447 -9542083 + PB1D9 SINE Alu 2 110 -10 3 1437 321 68 0 0 chr12 111715447 111715491 -9542039 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 1437 294 106 0 0 chr12 111715980 111716027 -9541503 + (CGTG)n Simple_repeat Simple_repeat 1 47 0 3 1437 622 193 9 0 chr12 111718240 111718349 -9539181 + Lx7 LINE L1 6776 6885 -811 3 1437 506 295 108 34 chr12 111718697 111718805 -9538725 + L1M4 LINE L1 4394 4499 -1641 3 1437 1870 145 44 133 chr12 111718805 111719235 -9538295 - ORR1B1 LTR MaLR 0 394 3 3 1437 506 295 108 34 chr12 111719235 111719533 -9537997 + L1M4 LINE L1 4500 4830 -1310 3 1437 557 306 88 8 chr12 111719568 111720178 -9537352 + L1M4 LINE L1 4978 5657 -532 3 1437 1170 27 0 33 chr12 111720465 111720617 -9536913 - B1_Mus2 SINE Alu 0 147 1 4 1437 428 295 79 7 chr12 111720761 111720901 -9536629 + RSINE1 SINE B4 3 152 -13 4 1437 765 144 50 0 chr12 111721138 111721277 -9536253 + B1_Mur4 SINE Alu 5 150 0 4 1437 786 216 33 0 chr12 111722958 111723111 -9534419 + RSINE1 SINE B4 3 160 -5 4 1437 346 255 27 89 chr12 111723456 111723568 -9533962 + BC1_Mm scRNA scRNA 3 107 -45 4 1437 258 220 33 17 chr12 111724838 111724898 -9532632 - Charlie2b DNA MER1_type -1883 899 839 4 1437 725 279 4 44 chr12 111725092 111725317 -9532213 - B3 SINE B2 0 216 1 4 1437 210 272 60 80 chr12 111725704 111725804 -9531726 - L2c LINE L2 -36 3351 3254 4 1437 191 377 0 0 chr12 111725937 111725990 -9531540 - MIRb SINE MIR -162 106 54 4 1437 322 287 43 0 chr12 111726501 111726595 -9530935 + MER3 DNA MER1_type 5 102 -107 4 1437 285 305 63 0 chr12 111726708 111726803 -9530727 - MER58A DNA MER1_type -103 121 21 4 1437 234 128 0 0 chr12 111727565 111727604 -9529926 + (CGTG)n Simple_repeat Simple_repeat 4 42 0 4 1437 387 0 0 0 chr12 111728558 111728601 -9528929 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1437 686 266 23 0 chr12 111728633 111728810 -9528720 - B3A SINE B2 -16 182 2 4 1437 448 273 0 26 chr12 111728833 111728946 -9528584 + B1F SINE Alu 19 128 -21 4 1437 551 270 43 0 chr12 111728965 111729080 -9528450 + RSINE1 SINE B4 11 130 -35 4 1437 966 69 0 0 chr12 111729086 111729217 -9528313 + (CA)n Simple_repeat Simple_repeat 1 131 0 4 1437 304 307 11 33 chr12 111729489 111729580 -9527950 + RSINE1 SINE B4 48 136 -29 4 1437 23 33 0 0 chr12 111729590 111729620 -9527910 + AT_rich Low_complexity Low_complexity 1 30 0 4 1437 286 375 16 16 chr12 111729627 111729749 -9527781 + ID_B1 SINE B4 78 199 -25 4 1437 335 304 48 10 chr12 111729654 111729757 -9527773 + B1F SINE Alu 23 129 -20 4 1437 188 292 11 63 chr12 111730373 111730468 -9527062 + MIR SINE MIR 127 216 -46 4 1437 1611 27 16 0 chr12 111730484 111730672 -9526858 + B2_Mm1a SINE B2 1 191 -2 4 1437 186 43 0 0 chr12 111730702 111730725 -9526805 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1437 1038 70 8 0 chr12 111731019 111731148 -9526382 - B1_Mus1 SINE Alu -18 130 1 4 1437 501 248 33 0 chr12 111731411 111731532 -9525998 - PB1 SINE Alu -2 125 1 4 1437 724 320 135 41 chr12 111732129 111732641 -9524889 + Charlie1a DNA MER1_type 117 676 -779 4 1437 376 235 51 0 chr12 111732822 111732919 -9524611 + PB1D7 SINE Alu 2 113 -7 4 1437 1233 28 21 0 chr12 111732942 111733084 -9524446 + B1_Mus2 SINE Alu 1 145 -2 4 1437 222 0 79 0 chr12 111733084 111733122 -9524408 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1437 234 0 0 0 chr12 111733221 111733247 -9524283 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1437 351 0 0 0 chr12 111733247 111733285 -9524245 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1437 539 320 109 37 chr12 111733287 111733637 -9523893 + Charlie1a DNA MER1_type 1077 1451 -4 4 1437 844 164 64 0 chr12 111733947 111734087 -9523443 - B1_Mur4 SINE Alu -1 149 1 4 1437 1052 71 21 0 chr12 111734955 111735095 -9522435 - B2_Mm2 SINE B2 0 195 53 4 1437 351 0 0 0 chr12 111735095 111735134 -9522396 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1437 322 257 137 22 chr12 111735682 111735821 -9521709 - MIRc SINE MIR -89 179 25 4 1437 391 329 90 19 chr12 111737750 111738215 -9519315 - L1M4 LINE L1 -1018 5128 4631 4 1437 203 186 93 0 chr12 111738790 111738833 -9518697 - L3 LINE CR1 -231 4258 4212 4 1437 294 95 0 0 chr12 111738973 111739015 -9518515 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1437 352 311 84 35 chr12 111739112 111739315 -9518215 + L1MB5 LINE L1 5913 6125 -49 4 1437 679 148 155 8 chr12 111739318 111739447 -9518083 + B1_Mur3 SINE Alu 1 148 -1 4 1437 384 22 0 0 chr12 111739449 111739494 -9518036 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1437 321 247 185 0 chr12 111741094 111741198 -9516332 - ID_B1 SINE B4 -20 204 86 4 1437 527 0 16 0 chr12 111741363 111741426 -9516104 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1437 1183 189 138 55 chr12 111741630 111741955 -9515575 - ORR1B2 LTR MaLR -15 352 1 4 1437 219 88 0 0 chr12 111742009 111742043 -9515487 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 4 1437 415 296 62 40 chr12 111742203 111742379 -9515151 + MER113A DNA MER1_type 1 180 -134 4 1437 26 0 0 0 chr12 111744880 111744906 -9512624 + AT_rich Low_complexity Low_complexity 1 26 0 4 1437 1038 185 64 25 chr12 111745116 111745362 -9512168 - ORR1B1 LTR MaLR -105 269 41 4 1437 403 251 107 45 chr12 111745642 111745754 -9511776 - PB1D10 SINE Alu -198 116 6 4 1437 270 0 0 0 chr12 111745799 111745829 -9511701 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1437 211 189 257 71 chr12 111746293 111746440 -9511090 - MIRb SINE MIR -54 208 42 4 1437 259 276 93 28 chr12 111746463 111746571 -9510959 - PB1D10 SINE Alu -2 115 1 4 1437 232 300 0 0 chr12 111747287 111747347 -9510183 + ID4 SINE ID 10 69 -14 4 1437 407 225 95 29 chr12 111747496 111747601 -9509929 + PB1D10 SINE Alu 6 117 0 4 1437 857 98 6 38 chr12 111748319 111748478 -9509052 + (TTTCC)n Simple_repeat Simple_repeat 2 155 0 4 1437 263 295 71 153 chr12 111748939 111749207 -9508323 - ORR1E LTR MaLR -15 344 99 4 1437 1213 48 14 0 chr12 111749249 111749394 -9508136 + B1_Mus1 SINE Alu 2 148 0 4 1437 27 62 0 0 chr12 111750660 111750708 -9506822 + AT_rich Low_complexity Low_complexity 1 48 0 4 1437 357 24 0 0 chr12 111750822 111750864 -9506666 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 4 1437 535 148 0 12 chr12 111752256 111752338 -9505192 + ID4 SINE ID 1 81 -2 4 1437 711 256 66 139 chr12 111752344 111752753 -9504777 + MTE2a LTR MaLR 1 379 0 4 1437 246 263 0 0 chr12 111752754 111752811 -9504719 + (TCG)n Simple_repeat Simple_repeat 2 58 0 4 1437 273 234 31 0 chr12 111753598 111753662 -9503868 - B3A SINE B2 -124 74 9 4 1437 484 284 48 34 chr12 111754199 111754345 -9503185 - B1F1 SINE Alu -1 148 1 4 1437 243 0 0 0 chr12 111754392 111754419 -9503111 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1437 670 199 14 64 chr12 111754477 111754617 -9502913 - B1_Mur2 SINE Alu 0 149 17 4 1437 1011 180 288 30 chr12 111754649 111754974 -9502556 - MTC LTR MaLR 0 421 13 4 1437 201 147 0 0 chr12 111755455 111755489 -9502041 + (GGA)n Simple_repeat Simple_repeat 1 34 0 4 1437 506 193 24 102 chr12 111755970 111756097 -9501433 - B1F2 SINE Alu -31 118 2 4 1437 592 194 69 8 chr12 111756207 111756337 -9501193 - RMER12 LTR ERVK 0 1322 1185 4 1437 4074 122 54 3 chr12 111756362 111757202 -9500328 - RMER12 LTR ERVK -533 789 1 4 1437 380 207 156 8 chr12 111757202 111757315 -9500215 + B3 SINE B2 81 211 -5 4 1437 499 304 10 20 chr12 111757292 111757456 -9500074 + ID_B1 SINE B4 38 195 -29 4 1437 715 195 16 16 chr12 111757346 111757471 -9500059 + B1_Mur1 SINE Alu 6 130 -19 4 1437 425 265 75 117 chr12 111757471 111757533 -9499997 + MT2B LTR ERVL 170 348 -253 4 1437 261 0 0 0 chr12 111757548 111757577 -9499953 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1437 387 0 0 0 chr12 111757577 111757619 -9499911 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1437 376 298 11 11 chr12 111757797 111757892 -9499638 - B1F SINE Alu -18 131 37 4 1437 689 178 17 0 chr12 111758303 111758421 -9499109 - B3 SINE B2 -96 120 1 4 1437 571 159 53 9 chr12 111758437 111758551 -9498979 - PB1D9 SINE Alu -1 119 1 4 1437 333 0 0 0 chr12 111758838 111758875 -9498655 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1437 601 307 172 33 chr12 111759465 111760034 -9497496 - Charlie1a DNA MER1_type -158 1297 650 4 1437 181 268 0 51 chr12 111760415 111760474 -9497056 + L2b LINE L2 3317 3372 -3 4 1437 329 129 0 46 chr12 111762062 111762127 -9495403 - HAL1-3A_ME LINE L1 -821 2037 1976 4 1437 243 264 0 0 chr12 111762128 111762257 -9495273 + (TG)n Simple_repeat Simple_repeat 2 130 0 4 1437 1054 109 0 7 chr12 111762388 111762536 -9494994 + B1_Mus1 SINE Alu 2 148 0 4 1437 1217 96 30 60 chr12 111762548 111762747 -9494783 + B2_Mm2 SINE B2 2 194 -1 4 1437 355 302 23 53 chr12 111762785 111762918 -9494612 - ORR1E LTR MaLR -213 146 18 4 1437 949 296 81 70 chr12 111763442 111763897 -9493633 - MT2A LTR ERVL -73 460 1 4 1437 1133 153 45 7 chr12 111764115 111764366 -9493164 - RMER16 LTR ERVK 0 533 242 4 1437 1203 48 7 33 chr12 111764374 111764526 -9493004 + B1_Mus1 SINE Alu 1 148 0 4 1437 186 103 0 0 chr12 111764527 111764556 -9492974 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1437 334 162 12 119 chr12 111764588 111764672 -9492858 - RMER16 LTR ERVK -457 76 2 4 1437 22956 153 41 48 chr12 111764673 111768951 -9488579 - RMER16-int LTR ERVK 0 5406 1121 4 1437 269 26 26 0 chr12 111768951 111768989 -9488541 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1437 1185 44 0 0 chr12 111768989 111769125 -9488405 - B1_Mus2 SINE Alu -11 136 1 4 1437 22956 153 41 48 chr12 111769125 111769254 -9488276 - RMER16-int LTR ERVK -4286 1120 1000 4 1437 1182 62 7 0 chr12 111769254 111769400 -9488130 + B1_Mus2 SINE Alu 1 147 0 4 1437 22956 153 41 48 chr12 111769400 111769549 -9487981 - RMER16-int LTR ERVK -4407 999 884 4 1437 1217 146 137 4 chr12 111769554 111769788 -9487742 - RMER16-int LTR ERVK -5662 475 211 4 1437 1240 179 85 70 chr12 111769967 111770297 -9487233 - RMER16 LTR ERVK 0 533 199 4 1437 527 163 35 0 chr12 111771832 111771918 -9485612 - B3 SINE B2 -127 89 1 4 1437 180 111 0 0 chr12 111773074 111773101 -9484429 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1437 257 348 0 11 chr12 111773263 111773353 -9484177 + PB1D7 SINE Alu 14 102 -18 4 1437 321 361 82 8 chr12 111773482 111773725 -9483805 - L1ME1 LINE L1 -198 5981 5721 5 1437 236 259 54 27 chr12 111773996 111774107 -9483423 - L1MEc LINE L1 -1239 5080 4967 5 1437 300 283 86 26 chr12 111774248 111774364 -9483166 - L1MEc LINE L1 -5293 1107 985 5 1437 464 288 30 30 chr12 111774468 111774665 -9482865 - L1MEc LINE L1 -5591 809 613 5 1437 618 256 64 160 chr12 111774791 111775032 -9482498 - MER2 DNA MER2_type -63 282 70 5 1437 1078 56 35 21 chr12 111775032 111775177 -9482353 - B1_Mm SINE Alu 0 147 1 5 1437 618 256 64 160 chr12 111775177 111775247 -9482283 - MER2 DNA MER2_type -276 69 1 5 1437 220 351 26 0 chr12 111775948 111776025 -9481505 - ID4_ SINE ID -1 82 4 5 1437 613 264 112 0 chr12 111776057 111776254 -9481276 - ID_B1 SINE B4 -4 220 2 5 1437 658 222 95 0 chr12 111776570 111776759 -9480771 + B3 SINE B2 5 211 -5 5 1437 388 155 24 12 chr12 111776984 111777069 -9480461 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 5 1437 192 77 0 0 chr12 111777075 111777101 -9480429 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1437 1121 82 0 7 chr12 111777152 111777299 -9480231 + B1_Mus1 SINE Alu 3 148 0 5 1437 1188 42 0 7 chr12 111777387 111777530 -9480000 + B1_Mm SINE Alu 2 143 -4 5 1437 275 365 65 0 chr12 111778096 111778203 -9479327 + B4A SINE B4 82 195 -97 5 1437 1081 62 14 0 chr12 111778960 111779106 -9478424 - B1_Mus1 SINE Alu 0 148 1 5 1437 288 0 0 0 chr12 111780064 111780096 -9477434 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 1437 573 300 20 0 chr12 111781022 111781172 -9476358 + B3 SINE B2 36 188 -28 5 1437 189 147 0 0 chr12 111781178 111781212 -9476318 + (GGA)n Simple_repeat Simple_repeat 3 36 0 5 1437 1032 50 50 0 chr12 111781370 111781509 -9476021 - B1_Mus2 SINE Alu 0 147 2 5 1437 222 111 67 0 chr12 111781592 111781637 -9475893 + A-rich Low_complexity Low_complexity 2 49 0 5 1437 2236 143 58 5 chr12 111782697 111783097 -9474433 - MTC LTR MaLR 0 421 1 5 1437 252 0 0 0 chr12 111784217 111784245 -9473285 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1437 269 299 131 0 chr12 111784694 111784801 -9472729 + B1F SINE Alu 1 121 -28 5 1437 321 285 161 8 chr12 111785076 111785200 -9472330 - B1_Mus1 SINE Alu -4 144 2 5 1437 278 267 0 0 chr12 111786335 111786395 -9471135 + AluG_3 SINE Alu 155 214 -97 5 1437 363 44 0 0 chr12 111787061 111787106 -9470424 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1437 998 99 0 32 chr12 111787106 111787262 -9470268 - B2_Mm2 SINE B2 -43 152 2 5 1437 243 308 25 13 chr12 111787276 111787355 -9470175 - B1F SINE Alu -59 90 11 5 1437 780 145 0 0 chr12 111787900 111788031 -9469499 - B1_Mus1 SINE Alu -17 131 1 5 1437 251 228 18 0 chr12 111790016 111790073 -9467457 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1437 676 291 52 26 chr12 111791255 111791527 -9466003 + B4A SINE B4 8 286 -6 5 1437 435 232 195 0 chr12 111791936 111792100 -9465430 + B3A SINE B2 1 196 -2 5 1437 183 42 0 0 chr12 111792109 111792133 -9465397 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1437 618 230 66 36 chr12 111792149 111792316 -9465214 + B3 SINE B2 1 172 -44 5 1437 382 325 16 8 chr12 111792366 111792493 -9465037 + ID_B1 SINE B4 29 156 -68 5 1437 411 254 18 35 chr12 111792425 111792539 -9464991 + PB1D10 SINE Alu 6 117 0 5 1437 229 250 155 29 chr12 111792657 111792760 -9464770 + PB1D10 SINE Alu 1 116 -1 5 1437 243 0 0 0 chr12 111792841 111792868 -9464662 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1437 192 40 0 0 chr12 111793559 111793584 -9463946 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1437 21 0 0 0 chr12 111793590 111793611 -9463919 + AT_rich Low_complexity Low_complexity 1 21 0 5 1437 198 0 0 0 chr12 111793622 111793644 -9463886 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1437 402 245 124 24 chr12 111793864 111794030 -9463500 + B3A SINE B2 3 184 -32 5 1437 808 157 14 0 chr12 111794774 111794914 -9462616 - B1_Mus1 SINE Alu -1 147 6 5 1437 541 288 103 75 chr12 111795041 111795390 -9462140 - MTEb LTR MaLR -19 360 2 5 1437 557 239 58 0 chr12 111796092 111796230 -9461300 - B1_Mur1 SINE Alu -3 146 1 5 1437 851 78 139 0 chr12 111796663 111796792 -9460738 + B1_Mm SINE Alu 1 147 0 5 1437 1436 173 160 9 chr12 111796885 111797217 -9460313 + ORR1B1 LTR MaLR 5 386 -8 5 1437 234 0 0 0 chr12 111797279 111797305 -9460225 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1437 450 0 0 0 chr12 111797305 111797355 -9460175 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1437 705 176 13 47 chr12 111797434 111797583 -9459947 + B1_Mur4 SINE Alu 6 149 -1 5 1437 435 323 24 0 chr12 111797629 111797756 -9459774 + RSINE1 SINE B4 3 132 -33 5 1437 1167 41 0 20 chr12 111798995 111799145 -9458385 - B1_Mus1 SINE Alu 0 148 2 5 1437 1080 141 121 5 chr12 111799247 111799446 -9458084 - URR1A DNA MER1_type 0 226 5 5 1437 493 236 27 9 chr12 111799837 111799948 -9457582 + PB1D7 SINE Alu 1 113 -7 5 1437 1286 90 21 0 chr12 111800231 111800419 -9457111 + B2_Mm2 SINE B2 2 193 -2 5 1437 29 0 0 0 chr12 111800484 111800513 -9457017 + AT_rich Low_complexity Low_complexity 1 29 0 5 1437 385 350 0 16 chr12 111801205 111801327 -9456203 + Lx8 LINE L1 6197 6316 -1157 5 1437 299 0 78 0 chr12 111801372 111801423 -9456107 + (CCTG)n Simple_repeat Simple_repeat 3 57 0 5 1437 287 245 223 0 chr12 111801423 111801517 -9456013 + ORR1D1 LTR MaLR 245 359 -15 5 1437 1065 292 174 17 chr12 111801520 111802267 -9455263 + Lx8 LINE L1 6358 7221 -252 5 1437 1139 84 78 0 chr12 111802295 111802474 -9455056 - B2_Mm1t SINE B2 0 193 1 5 1437 583 226 36 0 chr12 111802476 111802613 -9454917 - B1F1 SINE Alu 0 149 8 5 1437 409 184 0 0 chr12 111803727 111803803 -9453727 + B1F1 SINE Alu 66 141 -8 5 1437 356 313 53 38 chr12 111803829 111803962 -9453568 + RSINE1 SINE B4 31 165 0 5 1437 447 259 54 0 chr12 111803977 111804089 -9453441 + RSINE1 SINE B4 1 118 -47 5 1437 227 325 0 78 chr12 111804140 111804171 -9453359 + B4 SINE B4 63 86 -206 5 1437 293 367 64 0 chr12 111804171 111804280 -9453250 + PB1D10 SINE Alu 2 117 0 5 1438 336 48 0 0 chr12 111804431 111804473 -9453057 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1438 389 257 50 0 chr12 111804516 111804617 -9452913 - RSINE1 SINE B4 -57 108 3 5 1438 517 255 237 57 chr12 111805383 111805628 -9451902 + B4A SINE B4 4 292 0 5 1438 876 125 0 14 chr12 111806198 111806344 -9451186 - B1_Mus2 SINE Alu -3 144 1 5 1438 308 224 194 9 chr12 111807537 111807645 -9449885 + RSINE1 SINE B4 2 129 -36 5 1438 1122 48 7 0 chr12 111807701 111807847 -9449683 + B1_Mus2 SINE Alu 1 147 0 5 1438 385 260 19 29 chr12 111807891 111807994 -9449536 + PB1D10 SINE Alu 3 104 -13 5 1438 203 347 53 0 chr12 111808169 111808244 -9449286 - L2a LINE L2 -34 3392 3314 5 1438 243 0 0 0 chr12 111810221 111810248 -9447282 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1438 252 86 0 0 chr12 111811048 111811083 -9446447 + (CGTG)n Simple_repeat Simple_repeat 4 38 0 5 1438 230 118 0 38 chr12 111811092 111811145 -9446385 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 5 1438 459 0 0 0 chr12 111811145 111811196 -9446334 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1438 420 257 9 0 chr12 111814374 111814483 -9443047 + PB1D10 SINE Alu 3 112 -5 5 1438 677 238 38 27 chr12 111815248 111815434 -9442096 + ID_B1 SINE B4 8 195 -29 5 1438 379 257 28 19 chr12 111815852 111815959 -9441571 + PB1D10 SINE Alu 3 110 -7 5 1438 192 40 0 0 chr12 111816028 111816053 -9441477 + (CAGGA)n Simple_repeat Simple_repeat 4 28 0 5 1438 304 322 0 0 chr12 111817145 111817232 -9440298 + PB1D10 SINE Alu 2 88 -29 5 1438 473 266 9 0 chr12 111817855 111817964 -9439566 + PB1D7 SINE Alu 3 112 -8 5 1438 818 158 0 27 chr12 111821483 111821633 -9435897 + B1_Mur3 SINE Alu 4 149 0 5 1438 1154 49 0 0 chr12 111822525 111822669 -9434861 - B1_Mus2 SINE Alu -2 145 2 5 1438 537 220 9 18 chr12 111823093 111823204 -9434326 - B1F SINE Alu -4 145 36 5 1438 376 283 26 9 chr12 111823258 111823372 -9434158 + PB1D10 SINE Alu 2 117 0 5 1438 831 93 292 0 chr12 111823706 111823867 -9433663 - URR1B DNA MER1_type 0 225 18 5 1438 567 192 19 0 chr12 111824381 111824485 -9433045 - PB1D9 SINE Alu -13 107 2 5 1438 368 335 19 54 chr12 111824998 111825203 -9432327 - MER77 LTR ERVL -358 249 52 5 1438 431 275 39 72 chr12 111825498 111825651 -9431879 + RSINE1 SINE B4 18 165 0 5 1438 711 178 176 11 chr12 111825708 111825845 -9431685 + B3 SINE B2 2 152 -64 5 1438 216 0 0 0 chr12 111825845 111825869 -9431661 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1438 711 178 176 11 chr12 111825869 111825907 -9431623 + B3 SINE B2 153 206 -10 5 1438 839 8 227 0 chr12 111826220 111826339 -9431191 + B1_Mm SINE Alu 1 146 -1 5 1438 229 209 0 0 chr12 111827201 111827244 -9430286 + B1_Mur3 SINE Alu 65 107 -42 5 1438 1222 109 6 0 chr12 111827474 111827657 -9429873 - B2_Mm2 SINE B2 -9 186 3 5 1438 480 286 76 49 chr12 111828732 111828916 -9428614 - B3A SINE B2 0 198 10 5 1438 281 261 23 11 chr12 111829271 111829378 -9428152 + ID_B1 SINE B4 85 188 -104 5 1438 189 0 0 0 chr12 111830469 111830490 -9427040 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 5 1438 357 216 243 0 chr12 111830491 111830602 -9426928 - B1_Mur1 SINE Alu -11 138 1 5 1438 795 194 28 0 chr12 111831095 111831239 -9426291 - B1_Mur4 SINE Alu -1 149 2 5 1438 956 162 159 39 chr12 111831924 111832181 -9425349 - Lx9 LINE L1 -58 7586 7299 6 1438 2714 211 50 2 chr12 111832193 111832777 -9424753 - Lx9 LINE L1 -502 7142 6531 6 1438 275 235 104 75 chr12 111832814 111832920 -9424610 - ID_B1 SINE B4 -4 220 112 6 1438 1789 180 42 95 chr12 111833042 111833287 -9424243 - RLTR30 LTR ERV1 0 379 156 6 1438 1282 41 0 0 chr12 111833287 111833434 -9424096 - B1_Mm SINE Alu 0 147 1 6 1438 1789 180 42 95 chr12 111833434 111833588 -9423942 - RLTR30 LTR ERV1 -224 155 1 6 1438 613 285 35 23 chr12 111833984 111834163 -9423367 - B3 SINE B2 -10 183 1 6 1438 306 0 0 0 chr12 111835673 111835707 -9421823 + (GGA)n Simple_repeat Simple_repeat 2 35 0 6 1438 317 36 10 0 chr12 111836091 111836134 -9421396 - ORR1B1 LTR MaLR -8 321 285 6 1438 748 171 0 247 chr12 111836139 111836333 -9421197 - ORR1B1 LTR MaLR -187 207 1 6 1438 225 83 0 0 chr12 111836433 111836469 -9421061 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 6 1438 347 228 64 3 chr12 111836473 111836598 -9420932 - PB1D10 SINE Alu -21 126 2 6 1438 451 269 54 54 chr12 111837349 111837498 -9420032 + B1F1 SINE Alu 1 149 0 6 1438 216 86 0 0 chr12 111838494 111838529 -9419001 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1438 26 30 0 0 chr12 111839618 111839651 -9417879 + GC_rich Low_complexity Low_complexity 1 33 0 6 1438 180 125 0 0 chr12 111839768 111839800 -9417730 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 1438 291 266 153 25 chr12 111840425 111840576 -9416954 - MIR SINE MIR -82 186 16 6 1438 246 123 182 52 chr12 111841788 111841865 -9415665 - Lx2B LINE L1 -1 6999 6913 6 1438 314 287 73 9 chr12 111841979 111842088 -9415442 - B1_Mur3 SINE Alu -1 148 33 6 1438 764 251 58 54 chr12 111842316 111842539 -9414991 - ID_B1 SINE B4 0 224 1 6 1438 1639 22 0 0 chr12 111842610 111842789 -9414741 - B2_Mm1a SINE B2 -14 179 1 6 1438 315 0 0 0 chr12 111843195 111843230 -9414300 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1438 1225 41 7 0 chr12 111844027 111844173 -9413357 + B1_Mus1 SINE Alu 2 148 0 6 1438 1318 245 77 33 chr12 111844331 111844726 -9412804 - Lx7 LINE L1 -286 7410 6996 6 1438 1373 78 10 35 chr12 111844726 111844926 -9412604 - B2_Mm2 SINE B2 0 195 1 6 1438 1318 245 77 33 chr12 111844926 111844986 -9412544 - Lx7 LINE L1 -701 6995 6935 6 1438 419 176 529 0 chr12 111845056 111845192 -9412338 + B3 SINE B2 4 211 -5 6 1438 453 206 388 0 chr12 111845284 111845444 -9412086 + ID_B1 SINE B4 1 222 -2 6 1438 1078 72 65 0 chr12 111845521 111845660 -9411870 + B1_Mus1 SINE Alu 1 148 0 6 1438 188 259 132 24 chr12 111846306 111846389 -9411141 - MIRb SINE MIR -74 194 103 6 1438 1289 81 37 26 chr12 111846393 111846583 -9410947 - B2_Mm2 SINE B2 -2 193 2 6 1438 471 250 8 33 chr12 111846817 111846937 -9410593 - B1F2 SINE Alu -29 120 4 6 1438 303 264 20 90 chr12 111847487 111847562 -9409968 - L1MEg LINE L1 -4140 1944 1877 6 1438 664 127 124 23 chr12 111847562 111847691 -9409839 - B1_Mur3 SINE Alu -5 144 3 6 1438 303 264 20 90 chr12 111847691 111847715 -9409815 - L1MEg LINE L1 -4208 1876 1852 6 1438 227 221 91 0 chr12 111848779 111848856 -9408674 - L1M1 LINE L1 -395 5908 5825 6 1438 508 276 47 47 chr12 111849089 111849218 -9408312 + B1_Mur1 SINE Alu 6 134 -15 6 1438 567 194 10 0 chr12 111849356 111849459 -9408071 - B1_Mur1 SINE Alu 0 149 46 6 1438 1710 16 0 0 chr12 111849705 111849897 -9407633 + B2_Mm1a SINE B2 2 193 0 6 1438 232 324 114 29 chr12 111851113 111851218 -9406312 + PB1D10 SINE Alu 2 115 -2 6 1438 1136 44 0 0 chr12 111851248 111851384 -9406146 + B1_Mus2 SINE Alu 2 137 -10 6 1438 222 37 0 0 chr12 111851384 111851411 -9406119 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1438 376 180 348 0 chr12 111852035 111852124 -9405406 - PB1D9 SINE Alu 0 120 1 6 1438 240 167 0 0 chr12 111853448 111853496 -9404034 + T-rich Low_complexity Low_complexity 1 48 0 6 1438 1139 41 0 114 chr12 111853496 111853662 -9403868 - B1_Mus2 SINE Alu 0 147 1 6 1438 1398 83 43 10 chr12 111853665 111853872 -9403658 - L1_Mus3 LINE L1 0 6638 6425 6 1438 912 215 48 14 chr12 111853988 111854196 -9403334 - B3 SINE B2 0 216 2 6 1438 781 206 0 7 chr12 111854221 111854358 -9403172 - B1_Mur3 SINE Alu -13 136 1 6 1438 289 289 16 16 chr12 111855449 111855572 -9401958 - BC1_Mm scRNA scRNA -21 131 9 6 1438 225 0 0 0 chr12 111855636 111855661 -9401869 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1438 180 336 52 43 chr12 111855668 111855783 -9401747 - L4 LINE RTE -1582 447 332 6 1438 265 304 14 0 chr12 111858724 111858793 -9398737 + PB1D10 SINE Alu 41 110 -7 6 1438 328 302 60 7 chr12 111858913 111859063 -9398467 + L1MD3 LINE L1 7416 7573 -422 6 1438 1151 65 0 0 chr12 111859334 111859472 -9398058 - B1_Mur4 SINE Alu -8 142 5 6 1438 635 243 21 0 chr12 111860080 111860224 -9397306 - B1_Mur3 SINE Alu -1 148 2 6 1438 677 219 214 0 chr12 111860616 111860794 -9396736 - B3 SINE B2 0 216 1 6 1438 431 273 58 115 chr12 111860855 111861029 -9396501 - RSINE1 SINE B4 0 165 2 6 1438 964 202 259 55 chr12 111861423 111861806 -9395724 - RMER6B LTR ERVK 0 461 1 6 1438 218 290 139 12 chr12 111861982 111862183 -9395347 + L2a LINE L2 2922 3159 -267 6 1438 261 278 69 0 chr12 111862210 111862282 -9395248 + ID4_ SINE ID 6 82 -1 6 1438 516 16 0 0 chr12 111862973 111863034 -9394496 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1438 337 243 82 68 chr12 111863151 111863297 -9394233 - B1F2 SINE Alu -1 148 1 6 1438 407 152 268 5 chr12 111863297 111863409 -9394121 - B1F2 SINE Alu -23 126 2 6 1438 365 263 40 10 chr12 111864414 111864514 -9393016 + PB1D10 SINE Alu 9 111 -6 6 1438 555 221 74 27 chr12 111864522 111864671 -9392859 + RSINE1 SINE B4 2 157 -8 6 1438 568 259 49 13 chr12 111865624 111865795 -9391735 - B3 SINE B2 -21 195 25 6 1438 528 231 103 0 chr12 111865818 111865935 -9391595 + B3 SINE B2 1 129 -87 6 1438 346 191 0 42 chr12 111866702 111866773 -9390757 + BC1_Mm scRNA scRNA 9 76 -76 6 1438 432 185 3 6 chr12 111866773 111866786 -9390744 + ID_B1 SINE B4 9 92 -73 6 1438 204 132 26 0 chr12 111866868 111866906 -9390624 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1438 2406 164 71 7 chr12 111869217 111869653 -9387877 - RMER4A LTR ERVK -1 465 2 6 1438 238 337 40 20 chr12 111870109 111870209 -9387321 + PB1D7 SINE Alu 2 103 -17 6 1438 1079 104 7 0 chr12 111870352 111870496 -9387034 - B1_Mur4 SINE Alu -4 146 2 6 1438 21 0 0 0 chr12 111871270 111871291 -9386239 + AT_rich Low_complexity Low_complexity 1 21 0 6 1438 285 224 52 0 chr12 111871597 111871655 -9385875 - PB1D10 SINE Alu -12 105 45 6 1438 182 288 98 24 chr12 111871991 111872073 -9385457 - MIRb SINE MIR -92 176 89 6 1438 271 346 112 61 chr12 111872082 111872393 -9385137 - MLT1A LTR MaLR -47 327 1 6 1438 751 146 46 0 chr12 111873129 111873259 -9384271 - B1_Mus1 SINE Alu -1 147 12 6 1438 384 229 62 92 chr12 111874317 111874447 -9383083 - B1F SINE Alu -23 126 1 6 1438 367 299 18 61 chr12 111875883 111875997 -9381533 + Tigger7 DNA MER2_type 10 118 -2373 6 1438 334 327 53 26 chr12 111876002 111876153 -9381377 + Tigger7 DNA MER2_type 2325 2479 -12 6 1438 1101 75 0 20 chr12 111876287 111876436 -9381094 - B1_Mus2 SINE Alu -1 146 1 6 1438 249 33 0 0 chr12 111877440 111877470 -9380060 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1438 261 0 0 0 chr12 111877470 111877498 -9380032 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1438 1342 83 0 22 chr12 111877733 111877917 -9379613 - B2_Mm2 SINE B2 -15 180 1 6 1438 419 237 199 0 chr12 111879491 111879622 -9377908 + RSINE1 SINE B4 6 162 -3 6 1438 287 220 217 11 chr12 111880572 111880664 -9376866 + RSINE1 SINE B4 11 121 -44 6 1438 183 114 0 0 chr12 111880685 111880720 -9376810 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 6 1438 596 144 40 0 chr12 111880766 111880886 -9376644 - B1_Mus2 SINE Alu -2 147 6 6 1438 309 280 0 0 chr12 111880893 111880968 -9376562 - ID_B1 SINE B4 -20 204 130 6 1438 245 260 229 0 chr12 111880968 111880989 -9376541 - B1F1 SINE Alu -20 129 12 6 1438 1296 84 45 0 chr12 111882109 111882288 -9375242 - B2_Mm2 SINE B2 -7 188 2 6 1438 872 177 14 7 chr12 111882316 111882464 -9375066 - B1F2 SINE Alu 0 149 1 6 1438 1702 21 0 0 chr12 111882589 111882780 -9374750 + B2_Mm1a SINE B2 2 192 -1 6 1438 253 246 66 0 chr12 111882838 111882899 -9374631 + B1F1 SINE Alu 83 147 -2 6 1438 22 35 0 0 chr12 111882958 111882987 -9374543 + AT_rich Low_complexity Low_complexity 1 29 0 6 1438 1745 16 0 0 chr12 111883130 111883322 -9374208 + B2_Mm1t SINE B2 1 192 -1 6 1438 234 236 74 3 chr12 111883406 111883480 -9374050 + B1_Mus1 SINE Alu 22 97 -20 6 1438 310 302 66 0 chr12 111883718 111883824 -9373706 + PB1 SINE Alu 1 113 -14 6 1438 1430 83 0 5 chr12 111883871 111884064 -9373466 + B2_Mm2 SINE B2 1 192 -3 6 1438 1150 156 0 21 chr12 111884067 111884257 -9373273 + B2_Mm2 SINE B2 2 187 -8 6 1438 1179 118 63 41 chr12 111885401 111885622 -9371908 - URR1A DNA MER1_type 0 226 1 6 1438 520 62 25 0 chr12 111885622 111885703 -9371827 + L1Md_F2 LINE L1 6500 6582 0 6 1438 603 195 38 38 chr12 111886161 111886294 -9371236 - B1_Mur4 SINE Alu -13 137 5 6 1438 222 295 103 19 chr12 111886836 111886943 -9370587 + L2c LINE L2 3268 3383 -4 6 1438 1166 47 13 7 chr12 111886998 111887147 -9370383 + B1_Mur4 SINE Alu 1 150 0 6 1438 565 176 49 0 chr12 111888873 111888975 -9368555 + PB1D9 SINE Alu 1 107 -13 7 1438 1030 149 21 26 chr12 111889100 111889293 -9368237 + B3 SINE B2 11 202 -14 7 1438 283 188 35 2 chr12 111889316 111889387 -9368143 + PB1D10 SINE Alu 52 147 -2 7 1438 244 304 75 60 chr12 111890682 111890729 -9366801 + B4 SINE B4 43 96 -196 7 1438 695 278 47 10 chr12 111890729 111890922 -9366608 + B3 SINE B2 1 200 -16 7 1438 422 150 37 24 chr12 111890922 111890999 -9366531 + B1_Mus1 SINE Alu 9 87 -61 7 1438 313 262 31 14 chr12 111891060 111891193 -9366337 - PB1D10 SINE Alu -3 147 13 7 1438 256 311 0 28 chr12 111891111 111891220 -9366310 - ID_B1 SINE B4 -49 175 70 7 1438 652 136 9 9 chr12 111891659 111891770 -9365760 + B1_Mur4 SINE Alu 40 150 0 7 1438 1846 76 12 53 chr12 111891847 111892167 -9365363 - MusHAL1 LINE L1 0 2712 2406 7 1438 183 42 0 0 chr12 111893233 111893257 -9364273 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1438 306 273 136 65 chr12 111893271 111893455 -9364075 - B3A SINE B2 -1 197 1 7 1438 320 125 0 15 chr12 111893948 111894013 -9363517 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1438 439 292 0 0 chr12 111894314 111894410 -9363120 - RSINE1 SINE B4 -32 133 38 7 1438 726 189 68 0 chr12 111895562 111895694 -9361836 + B1_Mur2 SINE Alu 1 141 -8 7 1438 762 155 101 0 chr12 111895701 111895830 -9361700 + B1_Mus1 SINE Alu 3 144 -4 7 1438 258 206 48 0 chr12 111895843 111895906 -9361624 - tRNA-Ala-GCA tRNA tRNA -7 68 3 7 1438 247 231 48 60 chr12 111895906 111895918 -9361612 - ID SINE ID -141 55 2 7 1438 291 318 20 93 chr12 111897848 111897915 -9359615 + PB1 SINE Alu 1 71 -78 7 1438 905 100 131 0 chr12 111897915 111898045 -9359485 + B1_Mus2 SINE Alu 1 147 0 7 1438 291 311 4 132 chr12 111898045 111898119 -9359411 + PB1 SINE Alu 67 148 -1 7 1438 234 323 15 15 chr12 111898228 111898294 -9359236 + ID2 SINE ID 2 67 -16 7 1438 260 219 198 0 chr12 111898385 111898481 -9359049 + RSINE1 SINE B4 49 163 -2 7 1438 513 265 73 0 chr12 111898566 111898702 -9358828 + B1_Mur1 SINE Alu 2 147 -2 7 1438 873 0 0 0 chr12 111898739 111898848 -9358682 + L1Md_T LINE L1 6474 6582 0 7 1438 378 240 55 7 chr12 111899802 111899906 -9357624 + B1F SINE Alu 1 117 0 7 1438 1273 109 6 0 chr12 111900312 111900486 -9357044 + B2_Mm2 SINE B2 2 176 -19 7 1438 228 311 107 0 chr12 111901829 111901932 -9355598 + PB1D10 SINE Alu 1 114 -3 7 1438 715 91 0 0 chr12 111902989 111903088 -9354442 + B1_Mus2 SINE Alu 49 147 0 7 1438 393 22 0 0 chr12 111906335 111906381 -9351149 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1438 584 170 0 0 chr12 111906433 111906533 -9350997 - RSINE1 SINE B4 -55 110 11 7 1438 500 226 224 12 chr12 111907353 111907523 -9350007 - ID_B1 SINE B4 -2 222 17 7 1438 213 225 0 0 chr12 111907523 111907563 -9349967 - ID SINE ID -182 42 3 7 1438 459 0 0 0 chr12 111907580 111907631 -9349899 + (GGTTG)n Simple_repeat Simple_repeat 3 53 0 7 1438 723 156 18 0 chr12 111907645 111907754 -9349776 - PB1D9 SINE Alu -8 112 2 7 1438 455 309 130 16 chr12 111907777 111907961 -9349569 + B3 SINE B2 2 206 -10 7 1438 347 186 70 0 chr12 111907961 111908047 -9349483 - PB1D10 SINE Alu -13 104 13 7 1438 345 221 0 65 chr12 111908172 111908264 -9349266 + B1F SINE Alu 13 98 -51 7 1438 227 31 31 0 chr12 111908885 111908917 -9348613 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1438 454 158 79 0 chr12 111909211 111909312 -9348218 + B1F SINE Alu 41 149 0 7 1438 479 164 121 65 chr12 111909353 111909477 -9348053 + ID_B1 SINE B4 94 224 0 7 1438 1219 62 0 0 chr12 111909611 111909757 -9347773 - B1_Mus2 SINE Alu -1 146 1 7 1438 1252 116 17 0 chr12 111909788 111909960 -9347570 + B2_Mm2 SINE B2 2 176 -19 7 1438 1414 65 5 41 chr12 111909966 111910160 -9347370 + B2_Mm1a SINE B2 2 188 -5 7 1438 632 182 37 29 chr12 111910178 111910314 -9347216 + B3A SINE B2 1 137 -61 7 1438 1267 40 0 0 chr12 111910623 111910771 -9346759 - B1_Mus1 SINE Alu 0 148 1 7 1438 276 252 73 105 chr12 111910815 111910939 -9346591 + PB1D9 SINE Alu 1 120 0 7 1438 386 200 35 23 chr12 111910853 111910940 -9346590 + ID_B1 SINE B4 137 224 0 7 1438 586 275 72 11 chr12 111910948 111911128 -9346402 + B3A SINE B2 1 191 -7 7 1438 1135 63 21 0 chr12 111911133 111911275 -9346255 + B1_Mus2 SINE Alu 2 146 -1 7 1438 1481 78 11 0 chr12 111911291 111911482 -9346048 + B2_Mm1t SINE B2 1 193 0 7 1438 818 168 141 27 chr12 111911506 111911690 -9345840 + B3 SINE B2 2 206 -10 7 1438 260 299 58 0 chr12 111911923 111912010 -9345520 - L1MC3 LINE L1 -387 7398 7307 7 1438 711 123 156 0 chr12 111912322 111912444 -9345086 - B1_Mus1 SINE Alu -7 141 1 7 1438 770 242 77 0 chr12 111912542 111912736 -9344794 + B3 SINE B2 8 216 0 7 1438 544 144 132 19 chr12 111912740 111912846 -9344684 + B1_Mur4 SINE Alu 31 148 -2 7 1438 480 202 0 0 chr12 111913307 111913391 -9344139 - B1_Mur3 SINE Alu -62 87 4 7 1438 299 267 0 95 chr12 111913309 111913404 -9344126 - MT2B LTR ERVL -361 240 155 7 1438 319 224 47 0 chr12 111913406 111913491 -9344039 + RLTR40 LTR ERVK 19 107 -710 7 1438 969 250 19 14 chr12 111913501 111913716 -9343814 + B3 SINE B2 1 216 0 7 1438 1042 45 97 0 chr12 111913719 111913853 -9343677 + B1_Mus2 SINE Alu 1 147 0 7 1438 320 196 36 126 chr12 111913875 111913986 -9343544 + MT2B LTR ERVL 157 257 -344 7 1438 759 184 0 22 chr12 111913890 111914029 -9343501 + B1_Mur4 SINE Alu 13 148 -2 7 1438 636 264 123 111 chr12 111914063 111914152 -9343378 + RLTR40 LTR ERVK 120 201 -616 7 1438 1365 62 56 0 chr12 111914152 111914331 -9343199 - B2_Mm2 SINE B2 -6 189 1 7 1438 636 264 123 111 chr12 111914331 111914455 -9343075 + RLTR40 LTR ERVK 202 350 -467 7 1438 216 0 0 0 chr12 111914455 111914479 -9343051 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1438 636 264 123 111 chr12 111914479 111914491 -9343039 + RLTR40 LTR ERVK 351 361 -456 7 1438 1485 60 16 0 chr12 111914491 111914675 -9342855 + B2_Mm2 SINE B2 1 187 -8 7 1438 636 264 123 111 chr12 111914675 111914686 -9342844 + RLTR40 LTR ERVK 362 366 -451 7 1438 818 179 13 40 chr12 111914686 111914837 -9342693 + B1_Mur1 SINE Alu 2 148 -1 7 1438 636 264 123 111 chr12 111914837 111915075 -9342455 + RLTR40 LTR ERVK 367 602 -215 7 1438 945 152 215 0 chr12 111915086 111915263 -9342267 - B3 SINE B2 0 216 2 7 1438 279 0 0 0 chr12 111915496 111915527 -9342003 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1438 802 141 0 8 chr12 111915556 111915685 -9341845 + B3 SINE B2 3 130 -86 7 1438 381 295 86 7 chr12 111915737 111915877 -9341653 - RSINE1 SINE B4 -13 152 2 7 1438 196 28 26 53 chr12 111916134 111916172 -9341358 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 7 1438 1195 48 0 33 chr12 111916172 111916324 -9341206 - B1_Mus2 SINE Alu 0 147 1 7 1438 693 240 134 25 chr12 111916763 111916964 -9340566 - ID_B1 SINE B4 0 224 2 7 1438 1176 71 0 29 chr12 111917366 111917540 -9339990 - B2_Mm2 SINE B2 -25 170 2 7 1438 459 90 0 0 chr12 111917544 111917611 -9339919 - B1_Mur4 SINE Alu -1 149 83 7 1438 266 247 31 41 chr12 111917611 111917641 -9339889 - ID_B1 SINE B4 -1 223 128 7 1438 1320 211 121 93 chr12 111917633 111918183 -9339347 + RLTR31_Mur LTR ERVK 39 547 -6 7 1438 427 274 43 26 chr12 111918153 111918269 -9339261 - B1_Mus1 SINE Alu -29 119 2 7 1438 1226 62 0 0 chr12 111918304 111918450 -9339080 + B1_Mm SINE Alu 2 147 0 7 1438 699 71 0 0 chr12 111918466 111918564 -9338966 + (GAAAA)n Simple_repeat Simple_repeat 4 101 0 7 1438 1452 74 11 0 chr12 111918564 111918753 -9338777 + B2_Mm1t SINE B2 3 193 0 7 1438 410 38 101 0 chr12 111918753 111918812 -9338718 + (GAAAA)n Simple_repeat Simple_repeat 2 67 0 7 1438 1364 90 16 21 chr12 111918812 111919005 -9338525 + B2_Mm1a SINE B2 2 193 0 7 1438 410 38 101 0 chr12 111919005 111919024 -9338506 + (GAAAA)n Simple_repeat Simple_repeat 3 22 0 7 1438 822 164 126 11 chr12 111919128 111919279 -9338251 + B3 SINE B2 4 167 -49 7 1438 315 0 0 0 chr12 111919279 111919314 -9338216 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 7 1438 822 164 126 11 chr12 111919314 111919353 -9338177 + B3 SINE B2 168 216 0 7 1438 1371 66 60 0 chr12 111919759 111919941 -9337589 + B2_Mm2 SINE B2 3 195 0 7 1438 396 0 0 0 chr12 111920425 111920469 -9337061 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1438 536 251 110 0 chr12 111921691 111921854 -9335676 + ID_B1 SINE B4 41 221 -3 7 1438 210 184 0 0 chr12 111922057 111922092 -9335438 + T-rich Low_complexity Low_complexity 15 49 0 7 1438 1705 21 5 0 chr12 111922092 111922284 -9335246 - B2_Mm1a SINE B2 0 193 1 7 1438 210 184 0 0 chr12 111922284 111922297 -9335233 + T-rich Low_complexity Low_complexity 2 14 0 7 1438 804 178 155 6 chr12 111922316 111922497 -9335033 - B3 SINE B2 -7 209 2 7 1438 378 0 0 0 chr12 111922605 111922647 -9334883 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1438 252 301 35 17 chr12 111923130 111923245 -9334285 - Lx8 LINE L1 -2 7471 7355 7 1438 1742 246 115 8 chr12 111923300 111923829 -9333701 - Lx8 LINE L1 -341 7132 6547 7 1438 725 171 39 0 chr12 111923867 111923996 -9333534 - B3 SINE B2 -69 147 14 7 1438 434 266 7 43 chr12 111924646 111924787 -9332743 - B1_Mur2 SINE Alu 0 149 14 7 1438 548 239 167 0 chr12 111924817 111924955 -9332575 + RSINE1 SINE B4 2 162 -3 7 1438 457 191 26 71 chr12 111925012 111925125 -9332405 + PB1D10 SINE Alu 6 113 -4 7 1438 307 324 28 9 chr12 111925133 111925239 -9332291 + PB1D9 SINE Alu 13 120 0 7 1438 655 240 111 28 chr12 111925270 111925450 -9332080 + B3A SINE B2 2 196 -2 7 1438 753 115 0 0 chr12 111925468 111925581 -9331949 - B1_Mus2 SINE Alu 0 147 35 8 1438 508 271 28 111 chr12 111925635 111925676 -9331854 + B3A SINE B2 1 41 -157 8 1438 1418 60 43 5 chr12 111925676 111925861 -9331669 + B2_Mm2 SINE B2 1 192 -3 8 1438 508 271 28 111 chr12 111925861 111926035 -9331495 + B3A SINE B2 42 198 0 8 1438 1043 50 0 0 chr12 111926817 111926956 -9330574 + B1_Mus1 SINE Alu 10 148 0 8 1438 212 258 255 11 chr12 111926985 111927027 -9330503 + PB1D10 SINE Alu 1 117 0 8 1438 230 211 77 0 chr12 111927027 111927079 -9330451 + ID_B1 SINE B4 169 224 0 8 1438 232 300 33 0 chr12 111927101 111927161 -9330369 + ID4_ SINE ID 14 75 -8 8 1438 485 62 0 0 chr12 111927184 111927248 -9330282 + B2_Mm2 SINE B2 1 64 -131 8 1438 397 176 106 0 chr12 111927341 111927424 -9330106 + MTC LTR MaLR 5 96 -325 8 1438 1159 52 26 0 chr12 111927424 111927578 -9329952 + B2_Mm2 SINE B2 1 158 -37 8 1438 385 93 0 5 chr12 111927594 111927658 -9329872 + B2_Mm2 SINE B2 48 109 -107 8 1438 23 0 0 0 chr12 111927664 111927687 -9329843 + AT_rich Low_complexity Low_complexity 1 23 0 8 1438 364 78 0 0 chr12 111927696 111927747 -9329783 + B1_Mur4 SINE Alu 2 52 -98 8 1438 266 209 110 0 chr12 111928060 111928151 -9329379 + URR1B DNA MER1_type 125 225 0 8 1438 446 193 312 8 chr12 111928569 111928808 -9328722 - MTC LTR MaLR -8 413 83 8 1438 379 129 216 2 chr12 111928807 111928902 -9328628 - B1_Mus1 SINE Alu -5 115 1 8 1438 227 208 0 19 chr12 111928860 111928914 -9328616 - ID_B1 SINE B4 -102 122 70 8 1438 239 162 0 0 chr12 111928965 111929002 -9328528 - ID_B1 SINE B4 -13 211 175 8 1438 416 231 39 62 chr12 111930139 111930268 -9327262 - B1_Mm SINE Alu 0 147 22 8 1438 241 178 0 43 chr12 111931406 111931453 -9326077 + PB1D9 SINE Alu 13 57 -63 8 1438 298 247 63 25 chr12 111931770 111931849 -9325681 - ID4_ SINE ID -1 82 1 8 1438 253 238 16 0 chr12 111932364 111932427 -9325103 + CT-rich Low_complexity Low_complexity 1 64 0 8 1438 213 213 0 0 chr12 111932464 111932511 -9325019 + CT-rich Low_complexity Low_complexity 1 47 0 8 1438 25 75 0 0 chr12 111934764 111934817 -9322713 + GC_rich Low_complexity Low_complexity 1 53 0 8 179 485 241 35 21 chr12 111935459 111935603 -9321927 + B3 SINE B2 63 208 -8 8 1439 895 151 249 6 chr12 111935819 111935992 -9321538 + B3 SINE B2 2 216 0 8 1439 794 96 76 46 chr12 111936024 111936155 -9321375 + B1_Mus1 SINE Alu 1 135 -13 8 1439 353 239 135 8 chr12 111936352 111936458 -9321072 - B1_Mur2 SINE Alu -1 148 46 8 1439 212 233 30 100 chr12 111936626 111936726 -9320804 - BC1_Mm scRNA scRNA -48 104 12 8 1439 257 205 53 17 chr12 111936726 111936829 -9320701 - PB1 SINE Alu -15 134 21 8 1439 1537 157 30 84 chr12 111937113 111937543 -9319987 + RMER17C LTR ERVK 4 410 0 8 1439 592 203 207 11 chr12 111937585 111937764 -9319766 + B3 SINE B2 3 216 0 8 1439 1346 106 37 0 chr12 111937814 111938002 -9319528 + B2_Mm2 SINE B2 1 195 0 8 1439 392 219 14 0 chr12 111938031 111938104 -9319426 + B3 SINE B2 57 130 -86 8 1439 1028 81 29 0 chr12 111938602 111938738 -9318792 + B1_Mus1 SINE Alu 2 141 -7 8 1439 1703 135 153 11 chr12 111939009 111939368 -9318162 + RMER17C LTR ERVK 1 410 0 8 1439 369 0 0 0 chr12 111939605 111939646 -9317884 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1439 293 0 0 26 chr12 111939646 111939684 -9317846 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1439 495 0 0 0 chr12 111939754 111939809 -9317721 + (GA)n Simple_repeat Simple_repeat 1 55 0 8 1439 411 21 0 0 chr12 111940394 111940442 -9317088 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1439 218 315 0 21 chr12 111941561 111941655 -9315875 + B1_Mm SINE Alu 12 103 -44 8 1439 954 107 36 36 chr12 111941716 111941881 -9315649 - RMER2 LTR ERV1 0 567 403 8 1439 2641 100 2 29 chr12 111942015 111942428 -9315102 - RMER2 LTR ERV1 -165 402 1 8 1439 369 0 0 0 chr12 111942682 111942723 -9314807 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 8 1439 2264 121 30 40 chr12 111943620 111943857 -9313673 + RLTR14 LTR ERV1 1 246 -136 8 1439 1323 82 11 16 chr12 111943857 111944044 -9313486 + B2_Mm1a SINE B2 2 187 -6 8 1439 2264 121 30 40 chr12 111944044 111944178 -9313352 + RLTR14 LTR ERV1 247 368 -14 8 1439 635 224 232 17 chr12 111944330 111944507 -9313023 - B3 SINE B2 0 216 2 8 1439 567 0 0 0 chr12 111944569 111944632 -9312898 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1439 444 269 48 7 chr12 111945253 111945399 -9312131 - RSINE1 SINE B4 -11 154 3 8 1439 253 250 181 0 chr12 111945444 111945516 -9312014 + ID_B1 SINE B4 80 164 -60 8 1439 454 286 0 28 chr12 111945550 111945658 -9311872 - PB1D10 SINE Alu 0 117 13 8 1439 321 308 37 28 chr12 111945574 111945681 -9311849 - ID_B1 SINE B4 -47 177 70 8 1439 312 185 205 24 chr12 111945692 111945775 -9311755 - B1F SINE Alu -51 98 1 8 1439 192 40 0 0 chr12 111946201 111946226 -9311304 + (CACG)n Simple_repeat Simple_repeat 4 28 0 8 1439 354 240 148 12 chr12 111946245 111946360 -9311170 - ID_B1 SINE B4 -31 193 69 8 1439 180 0 0 0 chr12 111946612 111946632 -9310898 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 8 1439 267 307 0 13 chr12 111946632 111946708 -9310822 - ID4_ SINE ID -7 76 2 8 1439 1160 75 7 0 chr12 111946726 111946872 -9310658 - B1_Mus2 SINE Alu 0 147 1 8 1439 765 241 31 16 chr12 111946963 111947157 -9310373 - B3A SINE B2 0 198 2 8 1439 763 206 13 19 chr12 111947372 111947530 -9310000 + RSINE1 SINE B4 4 160 -5 8 1439 212 293 75 102 chr12 111947530 111947558 -9309972 + B3A SINE B2 3 183 -15 8 1439 190 238 128 23 chr12 111947580 111947666 -9309864 + L3 LINE CR1 2727 2821 -1668 8 1439 1249 27 7 0 chr12 111947778 111947924 -9309606 - B1_Mus1 SINE Alu 0 148 2 8 1439 329 223 65 16 chr12 111947987 111948099 -9309431 - ID4 SINE ID -25 127 15 8 1439 418 257 25 117 chr12 111948063 111948104 -9309426 - MT2B LTR ERVL -302 299 192 8 1439 591 106 20 18 chr12 111948104 111948213 -9309317 - B1_Mus1 SINE Alu -2 115 2 8 1439 418 257 25 117 chr12 111948213 111948226 -9309304 - MT2B LTR ERVL -302 191 152 8 1439 945 230 48 10 chr12 111948221 111948427 -9309103 - B3 SINE B2 0 216 3 8 1439 1073 95 0 20 chr12 111948892 111949043 -9308487 - B1_Mus1 SINE Alu 0 148 1 8 1439 853 254 1 2 chr12 111949148 111949340 -9308190 + B3A SINE B2 13 201 -15 8 1439 493 239 25 50 chr12 111949432 111949551 -9307979 + PB1D10 SINE Alu 1 116 -1 8 1439 225 0 0 0 chr12 111949908 111949933 -9307597 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1439 342 0 0 0 chr12 111949933 111949970 -9307560 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1439 247 254 15 45 chr12 111950054 111950120 -9307410 - B1F1 SINE Alu -38 111 48 8 1439 907 36 0 0 chr12 111950123 111950233 -9307297 - B1_Mus1 SINE Alu -37 111 2 8 1439 491 162 0 118 chr12 111950131 111950250 -9307280 - MT2B LTR ERVL -344 257 153 8 1439 976 83 6 103 chr12 111950267 111950441 -9307089 + B2_Mm2 SINE B2 2 158 -37 8 1439 245 29 0 29 chr12 111950441 111950476 -9307054 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 8 1439 767 267 131 57 chr12 111950600 111950883 -9306647 - L1M2 LINE L1 -1085 5055 4762 8 1439 895 228 29 10 chr12 111950883 111951087 -9306443 - B3 SINE B2 -7 209 2 8 1439 767 263 133 53 chr12 111951087 111951243 -9306287 - L1M2 LINE L1 -1379 4764 4596 8 1439 1463 75 5 0 chr12 111951369 111951557 -9305973 - B2_Mm1a SINE B2 -3 190 2 8 1439 508 133 20 0 chr12 111951557 111951658 -9305872 + B1_Mur4 SINE Alu 11 147 -3 8 1439 399 187 93 0 chr12 111951706 111951781 -9305749 - B3A SINE B2 -116 82 1 8 1439 543 204 15 199 chr12 111951805 111952001 -9305529 - RSINE1 SINE B4 -2 163 4 8 1439 532 212 55 55 chr12 111952013 111952158 -9305372 - L1M2 LINE L1 -2216 3927 3783 8 1439 643 279 47 24 chr12 111952169 111952338 -9305192 - B3 SINE B2 -42 174 2 8 1439 500 301 21 16 chr12 111952413 111952563 -9304967 - RSINE1 SINE B4 -13 152 2 8 1439 1170 82 0 7 chr12 111952697 111952844 -9304686 + B1_Mus2 SINE Alu 2 147 0 8 1439 191 61 30 0 chr12 111952847 111952880 -9304650 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1439 21 36 0 0 chr12 111953094 111953122 -9304408 + AT_rich Low_complexity Low_complexity 1 28 0 8 1439 492 265 10 0 chr12 111953188 111953286 -9304244 - B1F1 SINE Alu -50 99 1 8 1439 235 297 12 75 chr12 111953215 111953295 -9304235 - B4A SINE B4 -136 156 82 8 1439 257 228 55 15 chr12 111953408 111953484 -9304046 - B1F1 SINE Alu 0 149 68 8 1439 301 316 0 0 chr12 111953521 111953619 -9303911 + GA-rich Low_complexity Low_complexity 2 99 0 8 1439 1204 36 0 0 chr12 111953619 111953759 -9303771 + B1_Mus2 SINE Alu 1 140 -7 8 1439 260 233 0 75 chr12 111953759 111953802 -9303728 + A-rich Low_complexity Low_complexity 50 86 0 8 1439 228 323 16 24 chr12 111953820 111953914 -9303616 + CT-rich Low_complexity Low_complexity 36 127 0 8 1439 369 0 0 0 chr12 111953914 111953955 -9303575 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1439 228 323 16 24 chr12 111953955 111953987 -9303543 + polypyrimidine Low_complexity Low_complexity 3 35 0 8 1439 292 263 132 113 chr12 111954083 111954349 -9303181 + B4 SINE B4 4 274 -18 8 1439 752 302 22 22 chr12 111954403 111954633 -9302897 + B4A SINE B4 1 230 -62 8 1439 672 209 66 50 chr12 111954633 111954814 -9302716 + B3A SINE B2 1 184 -14 8 1439 827 146 0 0 chr12 111954821 111954951 -9302579 - B1_Mus2 SINE Alu -1 146 17 8 1439 393 344 89 11 chr12 111954993 111955184 -9302346 + B4A SINE B4 87 292 0 8 1439 415 253 33 11 chr12 111955229 111955317 -9302213 - PB1D10 SINE Alu -48 101 12 9 1439 324 355 70 87 chr12 111955317 111955408 -9302122 + MTEa LTR MaLR 1 82 -297 9 1439 4025 121 126 9 chr12 111955408 111956068 -9301462 + RMER19A LTR ERVK 1 737 0 9 1439 324 355 70 87 chr12 111956068 111956161 -9301369 + MTEa LTR MaLR 83 182 -197 9 1439 659 262 35 53 chr12 111956161 111956232 -9301298 + ID SINE ID 2 74 -150 9 1439 615 92 0 0 chr12 111956232 111956319 -9301211 + (CA)n Simple_repeat Simple_repeat 1 87 0 9 1439 659 262 35 53 chr12 111956319 111956473 -9301057 + ID_B1 SINE B4 75 222 -2 9 1439 630 182 56 70 chr12 111956825 111956967 -9300563 - B1_Mur1 SINE Alu -8 141 2 9 1439 946 330 33 11 chr12 111957022 111957472 -9300058 + ERVL-int LTR ERVL 1 460 -5254 9 1439 326 225 29 50 chr12 111957497 111957607 -9299923 + PB1D7 SINE Alu 11 115 -5 9 1439 300 254 0 0 chr12 111957639 111957706 -9299824 + ERVL-int LTR ERVL 478 544 -5170 9 1439 979 142 6 6 chr12 111957780 111957957 -9299573 + CT-rich Low_complexity Low_complexity 1 177 0 9 1439 1202 117 0 3 chr12 111957957 111958268 -9299262 + (TCC)n Simple_repeat Simple_repeat 1 310 0 9 1439 408 215 91 74 chr12 111958269 111958280 -9299250 + ERVL-int LTR ERVL 987 1001 -4756 9 1439 1114 82 0 7 chr12 111958280 111958428 -9299102 - B1_Mus1 SINE Alu 0 148 2 9 1439 408 215 91 74 chr12 111958428 111958592 -9298938 + ERVL-int LTR ERVL 1002 1165 -4592 9 1439 566 288 65 19 chr12 111958762 111958978 -9298552 + ERVL-int LTR ERVL 1200 1425 -4332 9 1439 312 188 0 0 chr12 111958991 111959052 -9298478 - RLTR22_Mus LTR ERVK -1054 754 694 9 1439 1188 81 0 0 chr12 111959052 111959201 -9298329 + B2_Mm2 SINE B2 2 150 -45 9 1439 294 85 21 0 chr12 111959212 111959259 -9298271 - RLTR22_Mur LTR ERVK -1505 343 296 9 1439 1225 41 0 0 chr12 111959265 111959410 -9298120 - B1_Mus1 SINE Alu 0 148 4 9 1439 1008 288 29 49 chr12 111959412 111959791 -9297739 - RLTR20A2 LTR ERVK -133 445 84 9 1439 4596 266 146 30 chr12 111959868 111960890 -9296640 + ERVL-int LTR ERVL 2019 3170 -2587 9 1439 345 24 0 0 chr12 111960890 111960932 -9296598 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1439 4596 266 146 30 chr12 111960932 111961279 -9296251 + ERVL-int LTR ERVL 3171 3513 -2244 9 1439 357 62 0 0 chr12 111961279 111961327 -9296203 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1439 4596 266 158 26 chr12 111961327 111961727 -9295803 + ERVL-int LTR ERVL 3514 3970 -1744 9 1439 4019 146 109 77 chr12 111961727 111962601 -9294929 - RMER19B LTR ERVK 0 902 1 9 1439 731 236 34 49 chr12 111962608 111962813 -9294717 + ERVL-int LTR ERVL 3968 4169 -1545 9 1439 1574 193 77 26 chr12 111962813 111963153 -9294377 + ORR1D1 LTR MaLR 1 357 -17 9 1439 373 315 9 18 chr12 111963251 111963361 -9294169 + RMER15 LTR ERVL 382 490 -85 9 1439 298 211 41 27 chr12 111963656 111963729 -9293801 + ERVL-int LTR ERVL 5641 5714 0 9 1439 431 241 30 140 chr12 111963729 111963893 -9293637 + MTEa LTR MaLR 1 146 -233 9 1439 676 186 27 27 chr12 111964215 111964364 -9293166 - B1_Mur1 SINE Alu 0 149 1 9 1439 315 0 0 0 chr12 111964370 111964405 -9293125 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 1439 1199 68 0 0 chr12 111964418 111964564 -9292966 - B1_Mus1 SINE Alu -1 147 2 9 1439 731 209 106 37 chr12 111964727 111964916 -9292614 + B3 SINE B2 1 202 -14 9 1439 1137 75 0 7 chr12 111964949 111965097 -9292433 - B1_Mus1 SINE Alu 0 148 2 9 1439 242 283 0 0 chr12 111965193 111965246 -9292284 + PB1 SINE Alu 5 57 -70 9 1439 417 202 25 0 chr12 111965284 111965363 -9292167 + ID4_ SINE ID 2 82 -1 9 1439 587 242 11 96 chr12 111965373 111965551 -9291979 + RSINE1 SINE B4 2 164 -1 9 1439 217 306 0 0 chr12 111965582 111965631 -9291899 - ID_B1 SINE B4 -90 134 86 9 1439 888 131 22 0 chr12 111965675 111965812 -9291718 + B1_Mus1 SINE Alu 1 140 -8 9 1439 539 252 0 18 chr12 111965839 111965947 -9291583 + PB1D7 SINE Alu 1 107 -13 9 1439 285 29 0 0 chr12 111965947 111965981 -9291549 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1439 326 271 0 28 chr12 111966032 111966104 -9291426 + B1_Mur2 SINE Alu 24 93 -56 9 1439 384 77 0 0 chr12 111966181 111966233 -9291297 + (TCC)n Simple_repeat Simple_repeat 1 52 0 9 1439 1305 77 16 6 chr12 111966233 111966415 -9291115 - B2_Mm2 SINE B2 -11 184 1 9 1439 650 156 99 49 chr12 111966453 111966595 -9290935 + B1_Mur4 SINE Alu 2 150 0 9 1439 222 176 0 0 chr12 111966595 111966629 -9290901 + G-rich Low_complexity Low_complexity 1 34 0 9 1439 766 151 7 13 chr12 111966630 111966784 -9290746 + GA-rich Low_complexity Low_complexity 3 155 0 9 1439 3997 131 11 11 chr12 111966811 111967612 -9289918 - Lx5 LINE L1 -771 6279 5469 9 1439 3379 169 50 24 chr12 111967614 111968237 -9289293 + Lx5 LINE L1 6409 7047 -3 9 1439 446 265 78 102 chr12 111968474 111968718 -9288812 - B4 SINE B4 -2 290 53 9 1439 186 43 0 0 chr12 111969138 111969161 -9288369 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9 1439 1169 56 0 7 chr12 111969166 111969309 -9288221 - B1_Mus1 SINE Alu -6 142 1 9 1439 1314 71 44 0 chr12 111969320 111969503 -9288027 - B2_Mm2 SINE B2 -4 191 1 9 1439 1264 27 0 7 chr12 111969553 111969700 -9287830 - B1_Mm SINE Alu 0 147 2 9 1439 23 54 0 0 chr12 111969816 111969853 -9287677 + AT_rich Low_complexity Low_complexity 1 37 0 9 1439 386 278 0 0 chr12 111969863 111969960 -9287570 + B1F1 SINE Alu 2 98 -51 9 1439 670 136 0 10 chr12 111970040 111970143 -9287387 + B3 SINE B2 1 102 -114 9 1439 1051 136 141 0 chr12 111970143 111970341 -9287189 + URR1A DNA MER1_type 1 226 0 9 1439 353 260 116 16 chr12 111970465 111970594 -9286936 + B1F1 SINE Alu 2 143 -6 9 1439 800 179 57 47 chr12 111970641 111970852 -9286678 - B3 SINE B2 0 216 4 9 1439 282 210 81 0 chr12 111971259 111971321 -9286209 - ID_B1 SINE B4 -70 154 88 9 1439 1220 48 0 0 chr12 111971440 111971586 -9285944 + B1_Mm SINE Alu 2 147 0 9 1439 228 111 0 0 chr12 111971720 111971756 -9285774 + (T)n Simple_repeat Simple_repeat 1 36 0 9 1439 1280 64 25 60 chr12 111971757 111971801 -9285729 - B2_Mm1a SINE B2 0 193 161 9 1439 287 0 0 50 chr12 111971801 111971841 -9285689 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 9 1439 1280 64 25 60 chr12 111971841 111971996 -9285534 - B2_Mm1a SINE B2 -33 160 1 9 1439 617 219 57 28 chr12 111972031 111972172 -9285358 - B1_Mur3 SINE Alu -2 147 3 9 1439 567 241 45 0 chr12 111972175 111972308 -9285222 - B3 SINE B2 -3 213 75 9 1439 249 154 0 37 chr12 111972342 111972396 -9285134 - PB1D10 SINE Alu -2 115 64 9 1439 1753 46 0 14 chr12 111972433 111972644 -9284886 - MTB LTR MaLR -3 397 189 9 1439 1185 83 0 16 chr12 111972644 111972827 -9284703 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1439 218 32 0 31 chr12 111972838 111972870 -9284660 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 9 1439 447 19 0 0 chr12 111972868 111972920 -9284610 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 1439 948 82 0 0 chr12 111972920 111973042 -9284488 - B1_Mus1 SINE Alu -5 143 22 9 1439 1373 112 0 61 chr12 111973008 111973237 -9284293 - MTB LTR MaLR -181 215 1 9 1439 2491 60 6 0 chr12 111973277 111973594 -9283936 - ORR1A2 LTR MaLR -8 319 1 9 1439 316 264 0 65 chr12 111973594 111973670 -9283860 - ID_B1 SINE B4 -55 169 99 9 1439 22 35 0 0 chr12 111973794 111973823 -9283707 + AT_rich Low_complexity Low_complexity 1 29 0 9 1439 736 103 250 0 chr12 111973829 111973945 -9283585 + B1_Mus2 SINE Alu 1 145 -2 9 1439 1432 67 0 0 chr12 111973973 111974151 -9283379 - B2_Mm2 SINE B2 -17 178 1 9 1439 216 122 0 0 chr12 111974732 111974773 -9282757 + (A)n Simple_repeat Simple_repeat 1 41 0 9 1439 584 203 65 0 chr12 111974782 111974920 -9282610 + B1_Mus2 SINE Alu 1 147 0 9 1439 242 241 133 70 chr12 111975478 111975621 -9281909 + MER50 LTR ERV1 229 380 -354 9 1439 261 75 0 0 chr12 111975632 111975672 -9281858 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 9 1439 28 29 0 0 chr12 111976505 111976540 -9280990 + GC_rich Low_complexity Low_complexity 1 35 0 9 1439 188 0 74 0 chr12 111977372 111977399 -9280131 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 9 1439 197 233 29 130 chr12 111977786 111977855 -9279675 + MIR SINE MIR 37 98 -110 9 1439 790 246 32 0 chr12 111978083 111978270 -9279260 + B3A SINE B2 1 193 -5 9 1439 402 291 6 96 chr12 111978302 111978458 -9279072 + B1F SINE Alu 8 149 0 9 1439 399 187 44 7 chr12 111978494 111978588 -9278942 + B1_Mur1 SINE Alu 50 149 -1 9 1439 1348 70 21 36 chr12 111978637 111978830 -9278700 + B2_Mm1t SINE B2 1 190 -3 9 1439 469 292 69 16 chr12 111978875 111979063 -9278467 + B3A SINE B2 1 198 0 9 1439 221 288 0 15 chr12 111979158 111979225 -9278305 - ID4 SINE ID -14 69 4 9 1439 596 209 82 0 chr12 111979382 111979516 -9278014 + B1_Mus1 SINE Alu 2 146 -2 9 1439 1195 35 28 0 chr12 111979711 111979855 -9277675 + B1_Mus1 SINE Alu 1 148 0 9 1439 521 273 31 8 chr12 111979934 111980063 -9277467 - ID_B1 SINE B4 -2 222 91 9 1439 287 236 0 53 chr12 111980370 111980446 -9277084 - ID4_ SINE ID -10 73 2 9 1439 236 258 25 86 chr12 111980543 111980646 -9276884 - ID4_ SINE ID -57 95 1 9 1439 321 259 111 0 chr12 111980655 111980736 -9276794 - PB1D10 SINE Alu -9 108 19 9 1439 201 74 0 0 chr12 111981100 111981127 -9276403 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 9 1439 572 195 8 56 chr12 111981134 111981259 -9276271 - PB1D9 SINE Alu 0 120 2 9 1439 856 47 150 38 chr12 111981512 111981645 -9275885 + B1_Mus1 SINE Alu 1 148 0 9 1439 209 338 98 21 chr12 111981757 111981901 -9275629 + L2b LINE L2 3107 3260 -127 9 1439 849 135 56 7 chr12 111982160 111982302 -9275228 - B1_Mur3 SINE Alu 0 149 1 9 1439 573 176 86 29 chr12 111982414 111982554 -9274976 - B1_Mur1 SINE Alu -1 148 1 9 1439 233 295 61 31 chr12 111982671 111982769 -9274761 + L3 LINE CR1 4388 4488 -1 9 1439 3677 167 53 9 chr12 111982781 111983428 -9274102 - Lx5 LINE L1 -3 7047 6373 9 1439 270 0 0 0 chr12 111983433 111983463 -9274067 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 9 1439 780 188 199 34 chr12 111983464 111983640 -9273890 - B3 SINE B2 -10 206 2 9 1439 203 143 0 45 chr12 111983670 111983703 -9273827 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 1439 854 150 7 45 chr12 111983703 111983857 -9273673 - B1_Mus1 SINE Alu 0 148 1 1 1439 203 143 0 45 chr12 111983857 111983867 -9273663 + (TTTG)n Simple_repeat Simple_repeat 3 12 0 1 1439 271 231 46 0 chr12 111984201 111984266 -9273264 - ID4_ SINE ID -14 69 2 1 1439 868 201 61 6 chr12 111984296 111984476 -9273054 - B3 SINE B2 0 216 27 1 1439 216 262 115 0 chr12 111984422 111984483 -9273047 - B4A SINE B4 -211 81 14 1 1439 773 78 77 8 chr12 111984516 111984633 -9272897 - B1_Mur3 SINE Alu 0 149 25 1 1439 234 255 49 25 chr12 111984691 111984769 -9272761 - B1F SINE Alu -11 109 36 1 1439 900 63 138 23 chr12 111984883 111985013 -9272517 + B1_Mm SINE Alu 2 146 -1 1 1439 1251 48 0 0 chr12 111985162 111985309 -9272221 - B1_Mus2 SINE Alu 0 147 1 1 1439 674 174 9 0 chr12 111985394 111985509 -9272021 + B3 SINE B2 2 117 -99 1 1439 370 280 54 21 chr12 111985609 111985795 -9271735 - B3A SINE B2 -5 193 2 1 1439 932 222 60 71 chr12 111985964 111986231 -9271299 + B4A SINE B4 19 282 -10 1 1439 370 295 10 21 chr12 111986381 111986478 -9271052 + PB1D10 SINE Alu 7 102 -15 1 1439 654 207 27 33 chr12 111986478 111986628 -9270902 + B1_Mur1 SINE Alu 1 149 0 1 1439 22 35 0 0 chr12 111986761 111986790 -9270740 + AT_rich Low_complexity Low_complexity 1 29 0 1 1439 477 263 83 132 chr12 111986801 111986891 -9270639 - B4 SINE B4 0 292 226 1 1439 753 144 48 54 chr12 111986891 111987038 -9270492 - B1_Mus2 SINE Alu -1 146 1 1 1439 623 235 103 29 chr12 111987038 111987236 -9270294 - B4A SINE B4 -67 225 18 1 1439 216 0 0 0 chr12 111987261 111987285 -9270245 + (CTTG)n Simple_repeat Simple_repeat 1 24 0 1 1439 381 70 35 0 chr12 111987285 111987342 -9270188 - B1_Mus2 SINE Alu -13 134 76 1 1439 198 330 84 42 chr12 111988106 111988201 -9269329 + L2c LINE L2 3259 3357 -30 1 1439 1678 26 0 0 chr12 111988214 111988403 -9269127 - B2_Mm1a SINE B2 -3 190 2 1 1439 286 203 113 28 chr12 111988453 111988524 -9269006 - PB1D7 SINE Alu -9 140 56 1 1439 442 223 43 0 chr12 111988519 111988613 -9268917 + PB1D7 SINE Alu 17 114 -6 1 1439 259 257 245 9 chr12 111988520 111988626 -9268904 + B4A SINE B4 103 233 -59 1 1439 628 59 254 0 chr12 111989244 111989362 -9268168 - B1_Mus1 SINE Alu 0 148 1 1 1439 25 31 0 0 chr12 111989724 111989756 -9267774 + AT_rich Low_complexity Low_complexity 1 32 0 1 1439 477 325 25 49 chr12 111989759 111989921 -9267609 - RSINE1 SINE B4 0 165 8 1 1439 460 275 0 28 chr12 111989938 111990080 -9267450 - B1F1 SINE Alu -1 148 11 1 1439 429 321 0 46 chr12 111990128 111990301 -9267229 - RSINE1 SINE B4 0 165 1 1 1439 736 142 0 136 chr12 111990896 111991043 -9266487 + B1_Mur4 SINE Alu 5 131 -19 1 1439 400 256 22 0 chr12 111991064 111991154 -9266376 + B1F SINE Alu 7 98 -51 1 1439 490 122 37 9 chr12 111991242 111991350 -9266180 + CT-rich Low_complexity Low_complexity 3 113 0 1 1439 417 287 59 13 chr12 111991530 111991682 -9265848 - RSINE1 SINE B4 -4 161 3 1 1439 628 228 14 49 chr12 111991759 111991902 -9265628 - RSINE1 SINE B4 -25 140 3 1 1439 1216 54 0 13 chr12 111992005 111992155 -9265375 - B1_Mus1 SINE Alu 0 148 1 1 1439 545 286 38 0 chr12 111992350 111992483 -9265047 - ID_B1 SINE B4 -3 221 84 1 1439 235 242 152 0 chr12 111992530 111992596 -9264934 + ID4_ SINE ID 4 79 -4 1 1439 1682 181 107 0 chr12 111992883 111993221 -9264309 + ORR1D1 LTR MaLR 1 374 0 1 1439 262 322 157 50 chr12 111993323 111993444 -9264086 - B1F1 SINE Alu -15 134 1 1 1439 185 290 15 75 chr12 111993543 111993610 -9263920 + L2a LINE L2 3360 3422 -4 1 1439 1018 40 63 0 chr12 111993771 111993897 -9263633 - B1_Mm SINE Alu -13 134 1 1 1439 1945 212 143 46 chr12 111993898 111994438 -9263092 - RMER19B LTR ERVK -2 900 309 1 1439 2460 157 148 20 chr12 111995031 111995538 -9261992 + RMER15 LTR ERVL 1 572 -3 1 1439 966 217 0 21 chr12 111995987 111996175 -9261355 + B3 SINE B2 19 202 -14 1 1439 1002 104 27 14 chr12 111996179 111996325 -9261205 - B1_Mur2 SINE Alu -1 148 1 1 1439 245 250 35 117 chr12 111996396 111996541 -9260989 - YREP_Mm Unknown Unknown -1494 318 186 1 1439 555 258 24 24 chr12 111996416 111996543 -9260987 + ID_B1 SINE B4 91 217 -7 1 1439 233 360 38 57 chr12 111996534 111996640 -9260890 + B4 SINE B4 66 169 -123 1 1439 614 227 9 0 chr12 111996566 111996676 -9260854 + PB1D9 SINE Alu 10 120 0 1 1439 749 146 110 52 chr12 111996687 111996860 -9260670 - B2_Mm2 SINE B2 -3 192 10 1 1439 1079 35 41 28 chr12 111996892 111997037 -9260493 - B1_Mus2 SINE Alu 0 147 1 1 1439 231 36 0 0 chr12 111997045 111997073 -9260457 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1439 1279 34 0 0 chr12 111997073 111997219 -9260311 - B1_Mm SINE Alu 0 147 2 1 1439 463 324 88 95 chr12 111997350 111997730 -9259800 - MER21B LTR ERV1 -11 852 475 1 1439 460 221 195 8 chr12 111997730 111997858 -9259672 - RSINE1 SINE B4 -13 152 1 1 1439 463 324 88 95 chr12 111997858 111997900 -9259630 - MER21B LTR ERV1 -389 474 433 1 1439 214 240 0 20 chr12 111998019 111998070 -9259460 + (CTG)n Simple_repeat Simple_repeat 1 50 0 1 1439 445 295 107 0 chr12 111998070 111998192 -9259338 - B1F1 SINE Alu -7 142 8 1 1439 374 304 0 0 chr12 111998196 111998311 -9259219 - PB1D10 SINE Alu 0 117 3 1 1439 216 322 2 115 chr12 111998320 111998426 -9259104 - B1F2 SINE Alu -52 97 1 1 1439 312 222 14 27 chr12 111998546 111998620 -9258910 + ID_B1 SINE B4 93 165 -59 1 1439 278 231 160 32 chr12 111998620 111998640 -9258890 + PB1D10 SINE Alu 12 117 0 1 1439 1200 36 0 0 chr12 111999269 111999407 -9258123 + B1_Mus1 SINE Alu 1 138 -10 1 1439 252 0 0 0 chr12 111999407 111999435 -9258095 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1439 765 194 28 0 chr12 112000357 112000501 -9257029 + B1_Mur2 SINE Alu 1 148 -1 1 1439 236 292 11 22 chr12 112001021 112001112 -9256418 + G-rich Low_complexity Low_complexity 1 90 0 2 1439 578 116 14 55 chr12 112001246 112001392 -9256138 - Lx2 LINE L1 -41 6956 6817 3 1439 569 267 8 8 chr12 112001434 112001551 -9255979 - ID_B1 SINE B4 -26 198 82 4 1439 1097 58 50 0 chr12 112001983 112002122 -9255408 + B1_Mm SINE Alu 1 146 -1 5 1439 249 140 0 0 chr12 112002124 112002181 -9255349 + (A)n Simple_repeat Simple_repeat 1 57 0 6 1439 248 130 22 0 chr12 112002279 112002325 -9255205 + CT-rich Low_complexity Low_complexity 2 48 0 7 1439 1091 112 0 0 chr12 112002328 112002471 -9255059 - B1_Mur4 SINE Alu -7 143 1 8 1439 404 231 9 18 chr12 112002606 112002716 -9254814 - Lx6 LINE L1 -41 7419 7311 9 1439 276 188 0 59 chr12 112003040 112003091 -9254439 + B3 SINE B2 48 95 -121 1 1439 273 281 21 7 chr12 112003258 112003398 -9254132 + CT-rich Low_complexity Low_complexity 5 146 0 1 1439 269 275 50 0 chr12 112003402 112003482 -9254048 - B1F SINE Alu -29 120 37 1 1439 376 254 73 80 chr12 112004075 112004212 -9253318 - B1_Mur2 SINE Alu -11 138 3 1 1439 1933 220 42 0 chr12 112004409 112004814 -9252716 + Lx9 LINE L1 6959 7380 -264 1 1439 1244 51 0 12 chr12 112004814 112004974 -9252556 + B2_Mm1t SINE B2 3 160 -33 1 1439 288 0 0 0 chr12 112004974 112005006 -9252524 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 1439 365 248 31 79 chr12 112005087 112005108 -9252422 + MT2B LTR ERVL 144 158 -443 1 1439 753 144 68 0 chr12 112005108 112005226 -9252304 + B1_Mur3 SINE Alu 1 126 -23 1 1439 182 37 37 0 chr12 112005226 112005253 -9252277 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1439 424 173 0 69 chr12 112005264 112005351 -9252179 + PB1D10 SINE Alu 31 111 -6 2 1439 217 384 47 16 chr12 112005357 112005373 -9252157 + B4 SINE B4 82 160 -132 2 1439 297 262 33 52 chr12 112005373 112005476 -9252054 + PB1D9 SINE Alu 13 109 -40 2 1439 285 128 0 0 chr12 112005484 112005531 -9251999 + (CAGT)n Simple_repeat Simple_repeat 4 50 0 2 1439 486 46 0 0 chr12 112005532 112005597 -9251933 + (TCCC)n Simple_repeat Simple_repeat 4 68 0 2 1439 317 292 14 0 chr12 112005703 112005775 -9251755 + RSINE1 SINE B4 72 144 -21 2 1439 180 0 0 0 chr12 112005813 112005833 -9251697 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1439 676 165 0 0 chr12 112006142 112006259 -9251271 - B1_Mur3 SINE Alu -2 118 2 2 1439 247 320 0 133 chr12 112006436 112006526 -9251004 - B4 SINE B4 -150 142 65 2 1439 317 268 110 0 chr12 112006554 112006636 -9250894 - ID_B1 SINE B4 -57 167 77 2 1439 225 0 0 0 chr12 112006706 112006731 -9250799 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 3 1439 327 202 50 12 chr12 112006732 112006812 -9250718 - B1F SINE Alu -11 138 56 3 1439 319 333 45 27 chr12 112007227 112007338 -9250192 + B1F2 SINE Alu 3 115 -34 3 1439 212 114 22 22 chr12 112008437 112008482 -9249048 + (GTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1439 242 333 36 0 chr12 112008604 112008688 -9248842 - MIRm SINE MIR -11 265 179 3 1439 515 189 85 0 chr12 112008870 112008976 -9248554 - B1_Mur4 SINE Alu -2 148 34 3 1439 1699 156 24 85 chr12 112009214 112009543 -9247987 + ORR1A4 LTR MaLR 21 329 0 3 1439 245 250 263 18 chr12 112009795 112009909 -9247621 + RSINE1 SINE B4 2 143 -22 3 1439 213 39 0 0 chr12 112010051 112010077 -9247453 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 3 1439 1958 149 82 19 chr12 112010532 112010900 -9246630 - ORR1B1 LTR MaLR -3 391 1 3 1439 181 237 74 62 chr12 112011003 112011084 -9246446 - L2 LINE L2 -1469 1950 1869 4 1439 858 73 0 9 chr12 112011108 112011219 -9246311 + B2_Mm2 SINE B2 2 111 -84 4 1439 1224 80 0 0 chr12 112011220 112011383 -9246147 - B2_Mm2 SINE B2 -31 164 2 4 1439 709 41 10 20 chr12 112011383 112011482 -9246048 + B2_Mm2 SINE B2 98 195 0 4 1439 2457 46 3 10 chr12 112011486 112011791 -9245739 + L1_Mus2 LINE L1 6264 6566 0 4 1439 553 236 166 7 chr12 112011876 112012021 -9245509 - B3 SINE B2 -22 194 27 4 1439 1203 55 0 14 chr12 112012023 112012171 -9245359 - B1_Mm SINE Alu -1 146 1 4 1439 281 270 0 51 chr12 112012291 112012369 -9245161 - PB1D10 SINE Alu -1 116 43 4 1439 512 274 9 0 chr12 112012463 112012576 -9244954 - ID_B1 SINE B4 -2 222 109 4 1439 371 321 90 0 chr12 112012576 112012597 -9244933 - B1F SINE Alu -2 147 2 4 1439 1253 89 50 0 chr12 112012702 112012881 -9244649 - B2_Mm2 SINE B2 -6 189 2 4 1439 951 137 59 0 chr12 112013205 112013358 -9244172 - B2_Mm2 SINE B2 -32 163 2 5 1439 201 94 0 0 chr12 112013371 112013403 -9244127 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1439 1276 34 0 0 chr12 112013404 112013550 -9243980 - B1_Mm SINE Alu 0 147 2 5 1439 589 261 108 0 chr12 112013641 112013836 -9243694 + B3 SINE B2 1 216 0 5 1439 708 147 64 29 chr12 112014809 112014949 -9242581 + B2_Mm2 SINE B2 51 195 0 5 1439 714 203 14 48 chr12 112015021 112015166 -9242364 - B1_Mus1 SINE Alu -8 140 1 5 1439 245 142 50 0 chr12 112015195 112015250 -9242280 + PB1D7 SINE Alu 74 147 0 5 1439 225 0 0 0 chr12 112015277 112015302 -9242228 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 5 1439 924 197 73 21 chr12 112015306 112015498 -9242032 + B3 SINE B2 2 203 -13 5 1439 352 219 167 33 chr12 112015831 112015954 -9241576 - PB1D9 SINE Alu -11 138 14 5 1439 252 227 84 70 chr12 112015895 112015966 -9241564 - MT2B LTR ERVL -367 234 163 6 1439 298 176 20 0 chr12 112016334 112016385 -9241145 - RSINE1 SINE B4 -111 54 3 6 1439 519 168 177 0 chr12 112016628 112016741 -9240789 + B1_Mur4 SINE Alu 18 150 0 6 1439 300 277 100 8 chr12 112016959 112017079 -9240451 - MER5A DNA MER1_type 0 189 59 6 1439 751 278 75 53 chr12 112017985 112018213 -9239317 + B4A SINE B4 60 292 0 6 1439 825 215 0 0 chr12 112018298 112018447 -9239083 - B1_Mur1 SINE Alu 0 149 1 6 1439 260 297 51 127 chr12 112020030 112020188 -9237342 - MIR3 SINE MIR -62 146 1 6 1439 706 222 8 0 chr12 112020280 112020406 -9237124 - B1_Mur1 SINE Alu -21 128 2 6 1439 422 300 99 14 chr12 112020406 112020417 -9237113 - B4 SINE B4 -69 218 70 6 1439 419 234 331 0 chr12 112020452 112020606 -9236924 - B3 SINE B2 -7 209 5 6 1439 308 276 0 26 chr12 112020666 112020744 -9236786 + PB1D10 SINE Alu 42 117 0 7 1439 279 116 0 0 chr12 112020906 112020949 -9236581 + PB1D7 SINE Alu 77 119 -1 7 1439 4453 68 7 0 chr12 112021244 112021804 -9235726 - L1_Mus1 LINE L1 0 6567 6004 7 1439 3262 62 5 67 chr12 112021805 112021957 -9235573 + L1_Mus1 LINE L1 5542 5685 -198 7 1439 468 0 0 0 chr12 112021957 112022009 -9235521 + (TTA)n Simple_repeat Simple_repeat 3 54 0 7 1439 1204 48 14 7 chr12 112022010 112022158 -9235372 - B1_Mur4 SINE Alu 0 150 2 7 1439 3262 45 6 62 chr12 112022158 112022516 -9235014 + L1_Mus1 LINE L1 5686 6028 -539 7 1439 445 158 49 0 chr12 112023029 112023111 -9234419 - B3A SINE B2 -48 150 65 7 1439 321 298 174 8 chr12 112023364 112023496 -9234034 + RSINE1 SINE B4 8 161 -4 7 1439 240 111 0 0 chr12 112024273 112024309 -9233221 + (TCTCCC)n Simple_repeat Simple_repeat 1 36 0 7 1439 870 151 13 46 chr12 112024363 112024516 -9233014 - B1_Mur3 SINE Alu -1 148 1 7 1439 708 136 186 0 chr12 112025096 112025214 -9232316 - B1_Mus1 SINE Alu -8 140 1 8 1439 27 29 0 0 chr12 112025222 112025256 -9232274 + AT_rich Low_complexity Low_complexity 1 34 0 8 1439 537 232 65 31 chr12 112025482 112025664 -9231866 - B2_Mm2 SINE B2 -6 192 8 8 1439 347 221 87 0 chr12 112025666 112025770 -9231760 - Lx8 LINE L1 -467 7006 6894 8 1439 502 15 30 0 chr12 112025935 112026002 -9231528 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1439 1442 40 74 0 chr12 112026371 112026385 -9231145 - B2_Mm1a SINE B2 -5 188 175 8 1439 225 0 0 0 chr12 112026385 112026410 -9231120 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 8 1439 1442 40 74 0 chr12 112026410 112026570 -9230960 - B2_Mm1a SINE B2 -19 174 2 8 1439 27 0 0 0 chr12 112026576 112026603 -9230927 + AT_rich Low_complexity Low_complexity 1 27 0 8 1439 584 272 87 0 chr12 112027465 112027649 -9229881 - MER33 DNA MER1_type -69 255 56 8 1439 239 210 31 46 chr12 112028042 112028107 -9229423 - B1F1 SINE Alu 0 149 86 8 1439 189 0 0 0 chr12 112029908 112029929 -9227601 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 9 1439 284 292 101 0 chr12 112031063 112031152 -9226378 + L2b LINE L2 3276 3373 -2 9 1439 189 0 0 0 chr12 112033590 112033611 -9223919 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1439 182 62 0 30 chr12 112039079 112039112 -9218418 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 9 1439 236 306 16 0 chr12 112039896 112039958 -9217572 - ID_B1 SINE B4 -19 205 143 9 1439 1083 137 0 12 chr12 112039957 112040127 -9217403 - B2_Mm2 SINE B2 -27 168 1 9 1439 351 197 13 0 chr12 112040128 112040204 -9217326 - ID_B1 SINE B4 -69 155 79 9 1439 462 79 0 0 chr12 112041914 112041977 -9215553 + (TA)n Simple_repeat Simple_repeat 1 63 0 9 1439 184 306 20 20 chr12 112043098 112043148 -9214382 + L2b LINE L2 3272 3321 -54 9 1439 398 300 9 52 chr12 112043282 112043398 -9214132 - B1F1 SINE Alu -33 116 6 9 1439 513 324 89 92 chr12 112045148 112045430 -9212100 - B4A SINE B4 -10 282 2 1 1439 344 179 168 59 chr12 112045836 112045937 -9211593 - PB1D10 SINE Alu -1 116 5 1 1439 641 163 160 16 chr12 112046978 112047103 -9210427 - B1_Mur1 SINE Alu -2 147 5 1 1439 308 284 97 10 chr12 112049111 112049214 -9208316 + ID_B1 SINE B4 84 195 -29 1 1439 1228 48 0 7 chr12 112050289 112050437 -9207093 - B1_Mus2 SINE Alu 0 147 1 1 1439 933 201 84 20 chr12 112050475 112050678 -9206852 - B3 SINE B2 0 216 1 1 1439 267 171 161 62 chr12 112050684 112050765 -9206765 + B1_Mus2 SINE Alu 59 147 0 1 1439 217 268 36 0 chr12 112052524 112052580 -9204950 + ID4_ SINE ID 23 80 -3 1 1439 1481 52 0 30 chr12 112052590 112052790 -9204740 + B2_Mm2 SINE B2 2 195 0 1 1439 622 229 46 41 chr12 112052870 112053066 -9204464 + B3A SINE B2 2 198 0 1 1439 604 242 0 0 chr12 112053786 112053906 -9203624 - RSINE1 SINE B4 -43 122 3 1 1439 736 175 24 0 chr12 112054204 112054330 -9203200 - B3A SINE B2 -65 133 5 1 1439 845 145 15 0 chr12 112054595 112054726 -9202804 + B1_Mur4 SINE Alu 1 133 -17 1 1439 200 213 21 0 chr12 112054731 112054778 -9202752 + GA-rich Low_complexity Low_complexity 4 51 0 1 1439 246 329 41 30 chr12 112054778 112054796 -9202734 - YREP_Mm Unknown Unknown -1498 314 259 1 1439 497 229 34 0 chr12 112054796 112054914 -9202616 + ID_B1 SINE B4 99 220 -4 1 1439 246 329 41 30 chr12 112054914 112054947 -9202583 - YREP_Mm Unknown Unknown -1498 258 144 1 1439 477 265 60 0 chr12 112054964 112055081 -9202449 + B1F SINE Alu 24 147 -2 1 1439 476 218 329 7 chr12 112055192 112055335 -9202195 + B3A SINE B2 2 190 -8 1 1439 842 239 39 24 chr12 112055357 112055563 -9201967 + B3 SINE B2 8 216 0 1 1439 441 0 0 0 chr12 112055698 112055747 -9201783 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1439 215 385 13 0 chr12 112055774 112055852 -9201678 + PB1D7 SINE Alu 22 100 -20 1 1439 1309 92 21 21 chr12 112055860 112056049 -9201481 + B2_Mm2 SINE B2 3 191 -4 1 1439 211 329 74 25 chr12 112056102 112056183 -9201347 + B1F1 SINE Alu 3 87 -62 1 1439 486 175 231 26 chr12 112056794 112056911 -9200619 - B1_Mus2 SINE Alu -4 143 3 1 1439 419 226 221 83 chr12 112056948 112056963 -9200567 - RSINE1 SINE B4 0 165 151 1 1439 444 19 0 0 chr12 112056963 112057016 -9200514 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1439 419 226 221 83 chr12 112057016 112057145 -9200385 - RSINE1 SINE B4 -15 150 1 1 1439 558 312 78 21 chr12 112058535 112058866 -9198664 + Lx8 LINE L1 6964 7313 -160 1 1439 578 228 89 53 chr12 112059329 112059519 -9198011 + B3A SINE B2 1 197 -1 1 1439 935 152 7 0 chr12 112059575 112059713 -9197817 - B1_Mur4 SINE Alu -10 140 2 1 1439 322 296 92 9 chr12 112060996 112061105 -9196425 + MIR SINE MIR 15 132 -130 1 1439 1341 69 6 11 chr12 112061107 112061284 -9196246 - B2_Mm2 SINE B2 -19 176 1 1 1439 1245 48 0 7 chr12 112061383 112061531 -9195999 + B1_Mm SINE Alu 1 147 0 1 1439 192 40 0 0 chr12 112061533 112061558 -9195972 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1439 917 172 42 26 chr12 112061574 112061765 -9195765 + B2_Mm2 SINE B2 2 195 0 1 1439 180 0 0 0 chr12 112061765 112061785 -9195745 + (GAA)n Simple_repeat Simple_repeat 3 22 0 1 1439 712 68 151 63 chr12 112062138 112062264 -9195266 + B1_Mur3 SINE Alu 12 148 -1 1 1439 238 180 33 0 chr12 112062321 112062382 -9195148 + GA-rich Low_complexity Low_complexity 1 63 0 1 1439 313 281 45 0 chr12 112062815 112062904 -9194626 + MER72B LTR ERV1 429 521 -247 1 1439 287 312 0 70 chr12 112063451 112063596 -9193934 - PB1D7 SINE Alu -13 136 2 1 1439 386 208 13 13 chr12 112063798 112063876 -9193654 - ID4 SINE ID -4 79 2 1 1439 232 241 78 69 chr12 112063876 112063992 -9193538 - PB1D10 SINE Alu 0 117 1 1 1439 375 288 155 16 chr12 112064088 112064282 -9193248 - Kanga2_a DNA Tc2 -571 317 97 1 1439 651 176 65 123 chr12 112065090 112065245 -9192285 - B1_Mur1 SINE Alu -2 147 2 1 1440 252 0 0 0 chr12 112068098 112068126 -9189404 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1440 210 71 0 0 chr12 112068126 112068153 -9189377 + (CG)n Simple_repeat Simple_repeat 2 29 0 1 1440 651 253 60 0 chr12 112068156 112068306 -9189224 - RSINE1 SINE B4 -4 161 3 1 1440 729 105 43 26 chr12 112068413 112068530 -9189000 + PB1D9 SINE Alu 2 120 0 1 1440 297 293 3 72 chr12 112068552 112068636 -9188894 + ID_B1 SINE B4 66 140 -152 1 1440 189 0 0 0 chr12 112068636 112068657 -9188873 + (G)n Simple_repeat Simple_repeat 1 21 0 1 1440 297 295 73 16 chr12 112068657 112068718 -9188812 + ID_B1 SINE B4 140 209 -15 1 1440 1672 47 0 0 chr12 112068733 112068926 -9188604 + B2_Mm1t SINE B2 1 193 0 1 1440 285 109 0 0 chr12 112068938 112068984 -9188546 + (GGA)n Simple_repeat Simple_repeat 1 46 0 1 1440 870 156 14 14 chr12 112069072 112069215 -9188315 + B1_Mur1 SINE Alu 3 145 -4 1 1440 758 152 42 0 chr12 112069463 112069581 -9187949 - B1_Mur1 SINE Alu -26 123 1 1 1440 333 296 68 62 chr12 112069581 112069626 -9187904 - MT2B2 LTR ERVL -423 161 116 1 1440 387 0 0 0 chr12 112069698 112069741 -9187789 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 1 1440 851 152 14 20 chr12 112069741 112069879 -9187651 - B1F2 SINE Alu -11 138 2 1 1440 241 233 13 27 chr12 112069939 112070014 -9187516 + ID4_ SINE ID 3 76 -7 1 1440 663 235 36 81 chr12 112070087 112070262 -9187268 - RMER5 LTR ERV1 0 534 355 1 1440 1760 10 0 0 chr12 112070262 112070455 -9187075 + B2_Mm1a SINE B2 1 193 0 1 1440 663 235 36 81 chr12 112070455 112070501 -9187029 - RMER5 LTR ERV1 -180 354 323 1 1440 710 206 77 91 chr12 112070492 112070700 -9186830 + B3 SINE B2 6 210 -6 1 1440 283 308 103 39 chr12 112070696 112070899 -9186631 - RMER5 LTR ERV1 -191 343 128 1 1440 340 139 220 85 chr12 112070890 112070989 -9186541 + B3 SINE B2 81 198 -18 1 1440 215 61 30 0 chr12 112070989 112071022 -9186508 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1440 799 209 187 0 chr12 112071022 112071204 -9186326 + B3 SINE B2 1 216 0 1 1440 340 139 220 85 chr12 112071204 112071221 -9186309 + B3 SINE B2 199 213 -3 1 1440 450 239 87 81 chr12 112071484 112071526 -9186004 + B4A SINE B4 50 221 -69 1 1440 1042 62 0 0 chr12 112071526 112071655 -9185875 + B1_Mus2 SINE Alu 13 141 -6 1 1440 297 0 0 0 chr12 112071657 112071690 -9185840 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1440 835 232 27 16 chr12 112071694 112071882 -9185648 + B3 SINE B2 27 216 0 1 1440 383 306 87 61 chr12 112072708 112072938 -9184592 + LTR33B LTR ERVL 252 487 -16 1 1440 310 282 15 0 chr12 112073107 112073183 -9184347 + ID2 SINE ID 16 92 -60 1 1440 719 180 78 0 chr12 112073460 112073588 -9183942 - B1_Mur2 SINE Alu -1 148 11 1 1440 1075 141 39 22 chr12 112073589 112073771 -9183759 + B2_Mm2 SINE B2 2 186 -9 1 1440 1293 27 0 0 chr12 112073774 112073921 -9183609 + B1_Mm SINE Alu 1 147 0 1 1440 212 171 0 0 chr12 112073921 112073962 -9183568 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1 1440 812 180 0 41 chr12 112074057 112074202 -9183328 - B1_Mus1 SINE Alu -9 139 1 1 1440 180 0 0 0 chr12 112076274 112076294 -9181236 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1440 1421 84 5 0 chr12 112076299 112076489 -9181041 + B2_Mm1a SINE B2 1 191 -2 1 1440 1518 58 16 0 chr12 112076582 112076772 -9180758 + B2_Mm2 SINE B2 1 193 -2 1 1440 990 135 7 7 chr12 112076780 112076929 -9180601 + B1_Mur4 SINE Alu 2 150 0 1 1440 324 0 0 0 chr12 112077113 112077149 -9180381 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1440 907 181 0 0 chr12 112077451 112077595 -9179935 + B1_Mus1 SINE Alu 5 148 0 1 1440 588 98 0 0 chr12 112077597 112077679 -9179851 + B1_Mus1 SINE Alu 1 82 -66 1 1440 297 0 0 0 chr12 112077681 112077714 -9179816 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1440 324 0 0 0 chr12 112077714 112077749 -9179781 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 1440 25 0 0 0 chr12 112077753 112077778 -9179752 + AT_rich Low_complexity Low_complexity 1 25 0 1 1440 220 310 26 66 chr12 112078011 112078087 -9179443 - ID_B1 SINE B4 -74 150 78 1 1440 615 235 14 22 chr12 112078097 112078236 -9179294 - B1_Mur2 SINE Alu 0 149 12 1 1440 315 122 0 0 chr12 112078798 112078847 -9178683 + (CGAA)n Simple_repeat Simple_repeat 4 52 0 1 1440 235 286 38 38 chr12 112079784 112079864 -9177666 + MIRm SINE MIR 186 265 -11 1 1440 1290 109 5 20 chr12 112080254 112080450 -9177080 + B2_Mm1a SINE B2 1 193 0 1 1440 390 176 0 142 chr12 112080872 112080978 -9176552 + PB1D9 SINE Alu 5 95 -25 1 1440 304 202 53 53 chr12 112080930 112081024 -9176506 + MT2B LTR ERVL 205 298 -303 1 1440 332 216 338 38 chr12 112081314 112081554 -9175976 + HAL1 LINE L1 1581 1892 -615 1 1440 600 236 124 16 chr12 112081732 112081926 -9175604 + ID_B1 SINE B4 3 217 -7 1 1440 398 195 93 49 chr12 112082344 112082471 -9175059 - ID_B1 SINE B4 -32 192 62 1 1440 429 255 66 3 chr12 112082738 112082863 -9174667 + B1F SINE Alu 1 129 -18 1 1440 683 0 0 0 chr12 112083547 112083621 -9173909 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 1 1440 252 0 0 0 chr12 112084127 112084155 -9173375 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1440 227 235 156 40 chr12 112084216 112084308 -9173222 - B1F SINE Alu -20 97 1 1 1440 232 242 31 46 chr12 112084247 112084312 -9173218 - ID_B1 SINE B4 -83 141 78 1 1440 2545 91 129 0 chr12 112084972 112085345 -9172185 + BGLII LTR ERVK 1 421 0 1 1440 355 183 29 97 chr12 112085366 112085469 -9172061 + B3A SINE B2 103 198 0 2 1440 1093 88 7 20 chr12 112085486 112085636 -9171894 + B1_Mus1 SINE Alu 1 148 0 2 1440 1084 68 141 0 chr12 112085673 112085836 -9171694 + B2_Mm1t SINE B2 2 187 -6 2 1440 889 151 14 7 chr12 112085844 112085991 -9171539 + B1_Mus1 SINE Alu 1 148 0 2 1440 23 0 0 0 chr12 112086007 112086030 -9171500 + AT_rich Low_complexity Low_complexity 1 23 0 2 1440 225 167 48 0 chr12 112086042 112086084 -9171446 + PB1D9 SINE Alu 8 51 -69 2 1440 355 197 14 0 chr12 112086352 112086423 -9171107 + PB1D10 SINE Alu 5 76 -41 2 1440 212 308 65 131 chr12 112086549 112086702 -9170828 + B3A SINE B2 52 194 -4 2 1440 360 148 0 0 chr12 112086996 112087057 -9170473 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 2 1440 188 303 75 75 chr12 112087058 112087165 -9170365 - L2c LINE L2 0 3387 3281 2 1440 761 171 206 0 chr12 112087251 112087426 -9170104 + B3 SINE B2 1 211 -5 2 1440 432 170 288 45 chr12 112087652 112087763 -9169767 + B1_Mus2 SINE Alu 1 138 -9 2 1440 359 282 16 49 chr12 112088126 112088249 -9169281 + ID_B1 SINE B4 22 140 -84 2 1440 25 95 0 0 chr12 112088685 112088759 -9168771 + GC_rich Low_complexity Low_complexity 1 74 0 2 1440 1141 75 7 0 chr12 112091027 112091173 -9166357 + B1_Mus1 SINE Alu 1 147 -1 2 1440 266 192 288 0 chr12 112091706 112091779 -9165751 + MER20 DNA MER1_type 70 163 -56 2 1440 216 0 0 0 chr12 112091791 112091815 -9165715 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1440 207 0 0 0 chr12 112091879 112091902 -9165628 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 1440 191 294 9 105 chr12 112091921 112092035 -9165495 + MIRm SINE MIR 166 268 -8 2 1440 189 0 0 0 chr12 112092133 112092154 -9165376 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1440 243 333 99 0 chr12 112092498 112092579 -9164951 - B1F1 SINE Alu -58 91 3 2 1440 589 208 0 77 chr12 112092594 112092724 -9164806 - PB1D9 SINE Alu 0 120 1 2 1440 366 138 21 94 chr12 112092754 112092835 -9164695 - B3 SINE B2 -3 213 140 2 1440 540 231 86 33 chr12 112092835 112092987 -9164543 + B3A SINE B2 3 162 -36 2 1440 428 238 0 0 chr12 112093060 112093144 -9164386 + B3A SINE B2 12 95 -103 2 1440 190 145 78 31 chr12 112093331 112093395 -9164135 - L2 LINE L2 -2111 1308 1242 2 1440 223 167 0 23 chr12 112094624 112094667 -9162863 + CT-rich Low_complexity Low_complexity 1 42 0 2 1440 183 42 0 0 chr12 112094761 112094785 -9162745 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2 1440 796 199 7 0 chr12 112094798 112094944 -9162586 - B1_Mur2 SINE Alu -1 148 2 2 1440 21 0 0 0 chr12 112095126 112095147 -9162383 + AT_rich Low_complexity Low_complexity 1 21 0 2 1440 258 292 68 14 chr12 112095159 112095232 -9162298 - B3A SINE B2 -100 98 22 2 1440 439 191 10 31 chr12 112095220 112095317 -9162213 - B1_Mur3 SINE Alu -54 95 1 2 1440 857 206 38 57 chr12 112095818 112096029 -9161501 - B3 SINE B2 -9 207 1 2 1440 203 167 0 53 chr12 112096039 112096096 -9161434 + T-rich Low_complexity Low_complexity 1 54 0 2 1440 982 52 37 15 chr12 112096098 112096234 -9161296 - B1_Mus2 SINE Alu 0 147 9 2 1440 237 245 93 7 chr12 112096140 112096280 -9161250 - ORR1B1-int LTR MaLR -755 754 603 2 1440 332 286 26 9 chr12 112097725 112097838 -9159692 + PB1 SINE Alu 11 125 -2 2 1440 733 230 67 0 chr12 112098161 112098295 -9159235 + B3A SINE B2 1 144 -54 2 1440 459 0 0 0 chr12 112098295 112098346 -9159184 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1440 733 237 72 33 chr12 112098346 112098397 -9159133 + B3A SINE B2 143 186 -9 2 1440 1080 56 7 0 chr12 112098498 112098642 -9158888 + B2_Mm1a SINE B2 49 193 0 2 1440 291 289 17 17 chr12 112099313 112099429 -9158101 - PB1D10 SINE Alu 0 117 2 2 1440 258 291 33 44 chr12 112099451 112099541 -9157989 + ID_B1 SINE B4 70 158 -66 2 1440 271 230 73 94 chr12 112099470 112099566 -9157964 + B1F1 SINE Alu 6 99 -50 2 1440 538 241 17 8 chr12 112100744 112100861 -9156669 + PB1D9 SINE Alu 2 119 -1 2 1440 1590 37 21 0 chr12 112100894 112101083 -9156447 + B2_Mm1a SINE B2 1 193 0 2 1440 495 0 0 0 chr12 112101097 112101152 -9156378 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 2 1440 198 103 0 0 chr12 112101380 112101409 -9156121 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 2 1440 1067 46 0 0 chr12 112101411 112101542 -9155988 - B1_Mm SINE Alu 0 147 17 2 1440 408 261 62 113 chr12 112103515 112103541 -9153989 - B2_Mm2 SINE B2 -2 193 171 2 1440 578 14 14 0 chr12 112103541 112103612 -9153918 + (TTTTA)n Simple_repeat Simple_repeat 5 76 0 2 1440 670 192 154 1 chr12 112103612 112103782 -9153748 - B3 SINE B2 -16 200 3 2 1440 21 0 0 0 chr12 112103810 112103831 -9153699 + GC_rich Low_complexity Low_complexity 1 21 0 2 1440 340 215 12 52 chr12 112104594 112104766 -9152764 + (TG)n Simple_repeat Simple_repeat 1 165 0 2 1440 818 189 234 0 chr12 112105203 112105378 -9152152 - B3 SINE B2 0 216 1 2 1440 495 0 0 0 chr12 112107301 112107356 -9150174 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1440 791 147 0 6 chr12 112107356 112107428 -9150102 + polypurine Low_complexity Low_complexity 2 73 0 2 1440 243 88 0 0 chr12 112107428 112107462 -9150068 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1440 791 147 0 6 chr12 112107462 112107567 -9149963 + polypurine Low_complexity Low_complexity 74 178 0 2 1440 398 246 27 18 chr12 112107602 112107714 -9149816 - PB1D10 SINE Alu -3 114 2 2 1440 219 224 0 20 chr12 112108213 112108263 -9149267 - ID4_ SINE ID -1 82 34 2 1440 256 294 0 56 chr12 112108257 112108347 -9149183 - PB1D10 SINE Alu -16 101 17 2 1440 677 169 114 8 chr12 112108365 112108496 -9149034 - B1_Mur2 SINE Alu -3 146 2 2 1440 392 214 24 0 chr12 112108606 112108690 -9148840 - PB1D10 SINE Alu -11 106 21 2 1440 1159 55 7 27 chr12 112108710 112108860 -9148670 + B1_Mus1 SINE Alu 2 148 0 2 1440 205 182 0 0 chr12 112108860 112108904 -9148626 + A-rich Low_complexity Low_complexity 3 46 0 2 1440 338 311 47 9 chr12 112109773 112109880 -9147650 + PB1D10 SINE Alu 1 111 -6 2 1440 1053 106 0 0 chr12 112109906 112110047 -9147483 + B1_Mus2 SINE Alu 7 147 0 2 1440 222 217 0 21 chr12 112110067 112110114 -9147416 + B1F SINE Alu 100 145 -4 2 1440 829 197 7 7 chr12 112110227 112110375 -9147155 - B1_Mur4 SINE Alu -2 148 1 2 1440 339 25 0 0 chr12 112110534 112110574 -9146956 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1440 305 304 86 86 chr12 112110685 112110894 -9146636 + B4A SINE B4 24 232 -60 2 1440 246 276 0 65 chr12 112110876 112110969 -9146561 + RSINE1 SINE B4 79 165 0 2 1440 200 200 46 0 chr12 112111362 112111427 -9146103 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1440 634 314 11 22 chr12 112111438 112111617 -9145913 + B3A SINE B2 7 183 -15 2 1440 268 312 49 49 chr12 112111765 112111846 -9145684 + ID4 SINE ID 2 82 -1 2 1440 485 273 35 14 chr12 112112404 112112545 -9144985 + ID_B1 SINE B4 4 147 -77 2 1440 616 265 32 21 chr12 112112810 112112999 -9144531 + B3A SINE B2 1 191 -7 2 1440 546 195 96 17 chr12 112113033 112113149 -9144381 + B1_Mus1 SINE Alu 1 127 -22 2 1440 297 0 0 0 chr12 112113149 112113182 -9144348 + (CAAAT)n Simple_repeat Simple_repeat 2 34 0 2 1440 467 265 93 22 chr12 112113182 112113204 -9144326 + B1_Mur2 SINE Alu 128 149 0 2 1440 761 107 18 9 chr12 112113326 112113439 -9144091 - PB1D9 SINE Alu -6 114 1 2 1440 429 333 8 57 chr12 112113439 112113540 -9143990 - RSINE1 SINE B4 -45 120 23 2 1440 3663 130 143 8 chr12 112113540 112114206 -9143324 - RMER6A LTR ERVK 0 756 1 2 1440 429 333 8 57 chr12 112114206 112114228 -9143302 - RSINE1 SINE B4 -143 22 3 2 1440 261 191 3 0 chr12 112114240 112114296 -9143234 - B1F1 SINE Alu -26 94 38 2 1440 1587 133 266 3 chr12 112114306 112114637 -9142893 + MTC LTR MaLR 1 418 -3 2 1440 215 31 31 0 chr12 112114809 112114841 -9142689 + (CCTG)n Simple_repeat Simple_repeat 3 35 0 2 1440 755 75 9 0 chr12 112114841 112114947 -9142583 + (TCCA)n Simple_repeat Simple_repeat 4 111 0 2 1440 419 277 112 12 chr12 112116305 112116466 -9141064 - B4A SINE B4 -91 201 25 2 1440 2975 18 0 3 chr12 112116526 112116871 -9140659 + MTA_Mm LTR MaLR 1 344 -52 2 1440 195 42 0 0 chr12 112116871 112116895 -9140635 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1440 757 221 32 0 chr12 112117206 112117360 -9140170 - B3A SINE B2 -38 160 2 2 1440 388 239 51 34 chr12 112117385 112117502 -9140028 + L1MC3 LINE L1 6740 6858 -927 2 1440 227 289 83 12 chr12 112117657 112117741 -9139789 + MER58B DNA MER1_type 226 315 -26 2 1440 250 196 155 52 chr12 112118082 112118179 -9139351 + PB1D10 SINE Alu 11 117 0 2 1440 636 247 90 37 chr12 112118245 112118434 -9139096 - B3 SINE B2 -16 200 2 2 1440 243 105 26 0 chr12 112118435 112118473 -9139057 - B2_Mm1t SINE B2 -74 119 81 2 1440 225 253 39 39 chr12 112118517 112118595 -9138935 - ID4 SINE ID -4 79 2 2 1440 1168 100 65 22 chr12 112119129 112119313 -9138217 - B2_Mm1a SINE B2 0 193 2 2 1440 1704 26 0 0 chr12 112119322 112119515 -9138015 - B2_Mm1a SINE B2 0 193 1 2 1440 493 229 94 51 chr12 112119524 112119662 -9137868 - B1_Mur4 SINE Alu -5 145 2 2 1440 329 330 45 19 chr12 112119871 112120003 -9137527 - PB1D7 SINE Alu -21 128 1 2 1440 267 271 47 36 chr12 112120002 112120104 -9137426 - PB1 SINE Alu -2 115 5 3 1440 789 227 66 15 chr12 112120121 112120318 -9137212 - B3 SINE B2 -5 211 5 3 1440 920 169 141 11 chr12 112120343 112120534 -9136996 - B3 SINE B2 0 216 1 3 1440 397 225 44 11 chr12 112120540 112120630 -9136900 - ID_B1 SINE B4 -8 216 124 3 1440 637 200 82 0 chr12 112120722 112120857 -9136673 + B1_Mus1 SINE Alu 3 148 0 3 1440 1194 61 0 0 chr12 112120863 112121011 -9136519 + B1_Mus1 SINE Alu 1 148 0 3 1440 243 0 0 0 chr12 112121013 112121040 -9136490 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1440 635 261 41 18 chr12 112121040 112121221 -9136309 + B3 SINE B2 33 216 0 3 1440 1170 49 0 7 chr12 112121248 112121392 -9136138 + B1_Mm SINE Alu 5 147 0 3 1440 410 284 59 66 chr12 112121397 112121501 -9136029 - RSINE1 SINE B4 -10 155 51 3 1440 2835 24 56 12 chr12 112121501 112121843 -9135687 + IAPEY2_LTR LTR ERVK 1 357 0 3 1440 410 284 59 66 chr12 112121843 112121874 -9135656 - RSINE1 SINE B4 -115 50 21 3 1440 487 228 35 0 chr12 112122430 112122544 -9134986 - PB1D9 SINE Alu 0 120 3 3 1440 409 290 102 13 chr12 112123056 112123213 -9134317 + MIRb SINE MIR 6 176 -92 3 1440 472 134 36 24 chr12 112123218 112123302 -9134228 + B1_Mur2 SINE Alu 64 148 -1 3 1440 439 263 90 8 chr12 112123586 112123720 -9133810 - B1F1 SINE Alu -3 146 2 3 1440 1634 27 21 0 chr12 112123752 112123940 -9133590 - B2_Mm1a SINE B2 0 193 2 3 1440 233 223 330 0 chr12 112124134 112124246 -9133284 + B1F1 SINE Alu 1 149 0 3 1440 807 85 0 0 chr12 112125071 112125177 -9132353 - B1_Mus2 SINE Alu -2 145 40 3 1440 304 167 73 29 chr12 112125118 112125186 -9132344 - RLTR25B LTR ERVK -530 498 428 3 1440 1634 150 133 7 chr12 112125190 112125499 -9132031 - ORR1B2 LTR MaLR -7 360 13 3 1440 402 305 19 26 chr12 112125492 112125647 -9131883 - B3A SINE B2 -5 193 40 3 1440 338 253 24 0 chr12 112125944 112126027 -9131503 + MTD LTR MaLR 127 211 -208 3 1440 475 301 66 0 chr12 112126049 112126185 -9131345 + B3 SINE B2 67 211 -5 3 1440 765 191 99 22 chr12 112126179 112126361 -9131169 + MTD LTR MaLR 210 405 -14 3 1440 400 279 99 11 chr12 112127978 112128159 -9129371 + MIRb SINE MIR 12 208 -60 3 1440 197 368 43 0 chr12 112128620 112128737 -9128793 - L2b LINE L2 -1 3374 3253 3 1440 750 185 122 26 chr12 112128854 112129043 -9128487 - B3 SINE B2 -8 208 2 3 1440 544 187 175 24 chr12 112129368 112129494 -9128036 - B1_Mm SINE Alu -2 145 1 3 1440 464 254 8 33 chr12 112129633 112129755 -9127775 - PB1D7 SINE Alu -1 119 1 3 1440 345 342 9 17 chr12 112129872 112129988 -9127542 - B1F2 SINE Alu -14 135 21 3 1440 259 290 0 16 chr12 112129996 112130059 -9127471 + RSINE1 SINE B4 2 63 -102 3 1440 846 221 90 79 chr12 112130265 112130442 -9127088 + B3A SINE B2 1 179 -16 3 1440 1229 184 19 19 chr12 112130443 112130639 -9126891 + B3 SINE B2 1 200 -16 3 1440 384 22 0 0 chr12 112130639 112130684 -9126846 + (TGG)n Simple_repeat Simple_repeat 3 47 0 3 1440 1229 184 19 19 chr12 112130684 112130703 -9126827 + B3 SINE B2 201 216 0 3 1440 422 179 19 3 chr12 112130819 112130921 -9126609 - B1F SINE Alu -1 148 30 3 1440 2363 170 19 19 chr12 112131990 112132409 -9125121 + MTC LTR MaLR 1 419 -2 3 1440 638 216 40 0 chr12 112133265 112133390 -9124140 - B1F SINE Alu -1 148 19 3 1440 987 191 75 0 chr12 112133822 112134021 -9123509 - B3 SINE B2 -2 214 1 3 1440 456 236 178 47 chr12 112134023 112134214 -9123316 - B3 SINE B2 0 216 1 3 1440 252 0 0 0 chr12 112134737 112134765 -9122765 + (TATAA)n Simple_repeat Simple_repeat 4 31 0 3 1440 696 203 0 89 chr12 112134818 112134975 -9122555 - B1_Mur3 SINE Alu -5 144 2 3 1440 302 264 52 52 chr12 112135022 112135118 -9122412 - B1F SINE Alu -51 98 3 3 1440 488 282 32 0 chr12 112135332 112135488 -9122042 - RSINE1 SINE B4 -2 163 3 3 1440 433 202 13 0 chr12 112135490 112135569 -9121961 - ID2 SINE ID 0 83 4 3 1440 457 266 99 0 chr12 112135584 112135776 -9121754 - MIR SINE MIR 0 262 52 3 1440 507 240 10 0 chr12 112135918 112136018 -9121512 + PB1D7 SINE Alu 1 101 -19 3 1440 270 0 0 0 chr12 112136018 112136048 -9121482 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1440 1438 66 6 0 chr12 112136048 112136230 -9121300 - B2_Mm1a SINE B2 -10 183 1 3 1440 212 31 62 0 chr12 112136246 112136278 -9121252 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1440 561 245 24 0 chr12 112136834 112136959 -9120571 + B1F1 SINE Alu 11 136 -13 3 1440 333 0 0 0 chr12 112136959 112136996 -9120534 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 1440 446 287 7 14 chr12 112136996 112137008 -9120522 + B1_Mus2 SINE Alu 136 147 0 3 1440 298 227 176 60 chr12 112137010 112137102 -9120428 + L1MDa LINE L1 1920 2020 -4613 3 1440 1264 73 84 6 chr12 112137102 112137261 -9120269 + B2_Mm1t SINE B2 2 160 -33 3 1440 243 0 0 0 chr12 112137261 112137288 -9120242 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1440 1264 73 84 6 chr12 112137288 112137306 -9120224 + B2_Mm1t SINE B2 161 191 -2 3 1440 298 266 174 38 chr12 112137306 112137535 -9119995 + L1MDa LINE L1 2011 2285 -4348 3 1440 315 207 17 17 chr12 112137555 112137614 -9119916 + ID4 SINE ID 3 61 -22 3 1440 282 253 105 13 chr12 112137614 112137631 -9119899 + ID SINE ID 3 85 -139 3 1440 333 0 0 0 chr12 112137680 112137717 -9119813 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1440 351 0 0 0 chr12 112137891 112137930 -9119600 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1440 216 0 0 0 chr12 112137930 112137953 -9119577 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1440 345 244 47 0 chr12 112137953 112138039 -9119491 + B4A SINE B4 145 234 -58 3 1440 250 296 59 47 chr12 112138054 112138139 -9119391 + RSINE1 SINE B4 80 165 0 3 1440 204 247 55 0 chr12 112138139 112138212 -9119318 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 1440 22 0 0 0 chr12 112138689 112138711 -9118819 + AT_rich Low_complexity Low_complexity 1 22 0 3 1440 370 330 83 0 chr12 112138731 112138840 -9118690 + B1F SINE Alu 1 118 -31 3 1440 609 148 120 0 chr12 112138864 112138972 -9118558 - B3 SINE B2 -95 121 1 3 1440 544 264 109 5 chr12 112139023 112139225 -9118305 - ID_B1 SINE B4 0 224 2 3 1440 982 120 7 0 chr12 112139242 112139384 -9118146 - B1_Mus1 SINE Alu -1 147 5 3 1440 234 294 97 46 chr12 112139397 112139593 -9117937 + L1MDa LINE L1 5006 5211 -1326 3 1440 1218 61 0 0 chr12 112140193 112140340 -9117190 + B1_Mus1 SINE Alu 2 148 0 3 1440 441 248 25 17 chr12 112140638 112140757 -9116773 - PB1D7 SINE Alu 0 120 1 3 1440 1006 140 0 13 chr12 112140886 112141038 -9116492 + B1_Mur4 SINE Alu 1 150 0 3 1440 486 231 23 62 chr12 112141053 112141182 -9116348 + RSINE1 SINE B4 34 157 -8 3 1440 291 352 14 0 chr12 112141492 112141637 -9115893 - MERVK26-int LTR ERVK -2715 4204 4058 3 1440 820 330 22 22 chr12 112141672 112142034 -9115496 - MERVK26-int LTR ERVK -2993 3926 3565 3 1440 977 332 118 50 chr12 112142081 112142786 -9114744 - MERVK26-int LTR ERVK -3447 3472 2717 3 1440 1669 6 0 0 chr12 112142786 112142964 -9114566 + B2_Mm1a SINE B2 2 179 -14 3 1440 977 332 118 50 chr12 112142964 112143231 -9114299 - MERVK26-int LTR ERVK -4203 2716 2434 3 1440 603 286 48 19 chr12 112143451 112143661 -9113869 - MERVK26-int LTR ERVK -4750 2169 1954 3 1440 2933 65 10 3 chr12 112144496 112144885 -9112645 - L1_Mus3 LINE L1 0 6638 6247 3 1440 210 167 0 0 chr12 112144889 112144925 -9112605 + T-rich Low_complexity Low_complexity 1 36 0 3 1440 1262 47 0 0 chr12 112144925 112145073 -9112457 - B1_Mus1 SINE Alu 0 148 1 3 1440 403 291 120 27 chr12 112145584 112145768 -9111762 - MERVK26-int LTR ERVK -6574 345 145 3 1440 362 279 113 18 chr12 112145897 112146065 -9111465 - RMER20A LTR ERVK -2 514 331 3 1440 1198 228 55 24 chr12 112146565 112146844 -9110686 - RLTR15 LTR ERVK -16 343 54 3 1440 207 0 0 0 chr12 112146844 112146867 -9110663 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1440 1198 228 55 24 chr12 112146867 112146915 -9110615 - RLTR15 LTR ERVK -306 53 6 3 1440 400 141 21 11 chr12 112147057 112147150 -9110380 + (CATA)n Simple_repeat Simple_repeat 4 97 0 3 1440 488 172 28 75 chr12 112147740 112147847 -9109683 + B1_Mm SINE Alu 3 104 -43 3 1440 754 176 30 23 chr12 112147860 112148011 -9109519 + B1_Mus2 SINE Alu 1 138 -9 3 1440 198 0 0 0 chr12 112148011 112148033 -9109497 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1440 548 195 123 9 chr12 112149000 112149114 -9108416 - B1_Mur2 SINE Alu -21 128 2 3 1440 1071 116 0 0 chr12 112149226 112149373 -9108157 + B1_Mus1 SINE Alu 2 148 0 3 1440 1236 258 89 16 chr12 112149387 112149813 -9107717 + L1M4c LINE L1 12 468 -5916 3 1440 25 0 0 0 chr12 112149813 112149838 -9107692 + AT_rich Low_complexity Low_complexity 1 25 0 3 1440 345 103 421 29 chr12 112149895 112150002 -9107528 + B2_Mm2 SINE B2 47 195 0 3 1440 635 149 0 10 chr12 112150003 112150105 -9107425 + RMER19B LTR ERVK 802 902 0 3 1440 449 289 114 0 chr12 112150105 112150254 -9107276 + B3A SINE B2 17 182 -16 3 1440 1695 233 110 66 chr12 112150294 112150600 -9106930 - Lx7 LINE L1 -5 7691 7344 3 1440 820 161 14 21 chr12 112150600 112150740 -9106790 + B1_Mur4 SINE Alu 1 139 -11 3 1440 1695 233 110 66 chr12 112150740 112150838 -9106692 - Lx7 LINE L1 -353 7343 7252 3 1440 1056 108 114 0 chr12 112150838 112151005 -9106525 + B2_Mm2 SINE B2 1 186 -9 3 1440 1695 233 110 66 chr12 112151005 112151191 -9106339 - Lx7 LINE L1 -445 7251 7075 3 1440 559 248 9 0 chr12 112151192 112151301 -9106229 + Lx7 LINE L1 6402 6511 -1185 3 1440 1282 27 0 0 chr12 112151639 112151785 -9105745 + B1_Mm SINE Alu 1 146 -1 3 1440 1765 224 125 57 chr12 112151798 112152476 -9105054 + RMER12 LTR ERVK 1 858 -546 3 1440 996 132 0 0 chr12 112152516 112152660 -9104870 - B2_Mm2 SINE B2 -50 145 2 3 1440 21 0 0 0 chr12 112152660 112152681 -9104849 + AT_rich Low_complexity Low_complexity 1 21 0 3 1440 285 207 17 0 chr12 112153037 112153095 -9104435 + B1_Mur4 SINE Alu 11 69 -81 3 1440 396 40 0 0 chr12 112153256 112153306 -9104224 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1440 366 80 0 0 chr12 112153307 112153357 -9104173 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1440 740 201 28 7 chr12 112153876 112154021 -9103509 + B1F1 SINE Alu 1 148 -1 4 1440 1919 257 124 17 chr12 112154265 112154807 -9102723 - Lx8 LINE L1 -175 7298 6699 4 1440 391 231 0 32 chr12 112154870 112154964 -9102566 + RMER15-int LTR ERVL 4194 4284 -715 4 1440 250 260 0 121 chr12 112154974 112154993 -9102537 - B3 SINE B2 -7 209 194 4 1440 327 25 0 0 chr12 112154993 112155033 -9102497 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1440 250 260 0 121 chr12 112155033 112155096 -9102434 - B3 SINE B2 -23 193 137 4 1440 339 358 119 13 chr12 112155089 112155324 -9102206 - Charlie1 DNA MER1_type -1067 1714 1455 4 1440 691 235 52 23 chr12 112155413 112155587 -9101943 - B3 SINE B2 -6 210 32 4 1440 228 283 86 26 chr12 112155738 112155854 -9101676 + L1ME1 LINE L1 6032 6154 -25 4 1440 626 204 38 0 chr12 112155921 112156053 -9101477 - B1_Mur2 SINE Alu -8 141 5 4 1440 541 276 14 14 chr12 112156356 112156503 -9101027 - RSINE1 SINE B4 -15 150 4 4 1440 387 0 0 0 chr12 112156800 112156843 -9100687 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1440 702 236 8 0 chr12 112156843 112156970 -9100560 - ID_B1 SINE B4 -13 211 84 4 1440 2720 43 0 85 chr12 112157384 112157762 -9099768 - ORR1A1 LTR MaLR 0 346 1 4 1440 408 88 0 0 chr12 112160432 112160489 -9097041 + (A)n Simple_repeat Simple_repeat 1 57 0 4 1440 434 180 324 0 chr12 112160524 112160635 -9096895 + B1F2 SINE Alu 2 148 -1 4 1440 490 242 50 198 chr12 112160762 112161004 -9096526 + ID_B1 SINE B4 15 220 -4 4 1440 482 250 0 62 chr12 112161068 112161196 -9096334 + PB1D9 SINE Alu 1 120 0 4 1440 361 281 50 45 chr12 112161208 112161236 -9096294 - B2_Mm2 SINE B2 -14 181 155 4 1440 189 94 0 0 chr12 112161236 112161268 -9096262 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 4 1440 497 249 101 14 chr12 112161268 112161418 -9096112 - B3A SINE B2 -37 161 2 4 1440 251 318 0 0 chr12 112161646 112161712 -9095818 + PB1D10 SINE Alu 47 112 -5 4 1440 4949 44 5 0 chr12 112161800 112162391 -9095139 - L1Md_F2 LINE L1 -1 6581 5988 4 1440 551 295 46 11 chr12 112162508 112162683 -9094847 + B3A SINE B2 18 198 0 4 1440 234 288 110 52 chr12 112162984 112163004 -9094526 - CYRA11_Mm Unknown Y-chromosome -296 321 225 4 1440 596 187 81 0 chr12 112163004 112163127 -9094403 + URR1B DNA MER1_type 93 225 0 4 1440 234 288 110 52 chr12 112163127 112163138 -9094392 - CYRA11_Mm Unknown Y-chromosome -296 224 159 4 1440 447 222 43 162 chr12 112163189 112163206 -9094324 - B2_Mm2 SINE B2 -2 193 180 4 1440 650 213 44 0 chr12 112163206 112163342 -9094188 - B1_Mm SINE Alu -5 142 1 4 1440 790 197 66 19 chr12 112163342 112163534 -9093996 - B3 SINE B2 -21 195 9 4 1440 924 208 14 37 chr12 112163550 112163601 -9093929 - B3 SINE B2 -6 210 164 4 1440 252 59 0 0 chr12 112163601 112163635 -9093895 + (CTCG)n Simple_repeat Simple_repeat 3 36 0 4 1440 924 208 14 37 chr12 112163635 112163798 -9093732 - B3 SINE B2 -53 163 1 4 1440 263 268 24 0 chr12 112164042 112164124 -9093406 + MIRb SINE MIR 139 222 -46 4 1440 573 244 25 0 chr12 112164993 112165112 -9092418 - RSINE1 SINE B4 -19 146 25 4 1440 204 158 0 0 chr12 112165166 112165204 -9092326 + (TATG)n Simple_repeat Simple_repeat 2 39 0 4 1440 230 286 0 60 chr12 112165208 112165275 -9092255 - tRNA-Ala-GCY_ tRNA tRNA -11 64 2 4 1440 189 0 0 0 chr12 112165359 112165380 -9092150 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1440 413 224 71 43 chr12 112165383 112165523 -9092007 - ID_B1 SINE B4 -3 221 78 4 1440 252 0 0 0 chr12 112165674 112165702 -9091828 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1440 233 217 0 21 chr12 112167466 112167513 -9090017 + PB1D9 SINE Alu 1 46 -74 4 1440 382 245 70 20 chr12 112167891 112167991 -9089539 - PB1D10 SINE Alu -1 116 12 4 1440 342 325 18 90 chr12 112167915 112168001 -9089529 - ID_B1 SINE B4 -55 169 88 4 1440 225 0 0 0 chr12 112168001 112168026 -9089504 + (TCTTG)n Simple_repeat Simple_repeat 1 25 0 4 1440 342 325 18 90 chr12 112168026 112168105 -9089425 - ID SINE ID -137 87 16 4 1440 487 303 42 21 chr12 112168343 112168535 -9088995 + MER3 DNA MER1_type 1 196 -13 4 1440 213 245 57 0 chr12 112168535 112168588 -9088942 + MIR SINE MIR 53 108 -100 4 1440 1699 31 0 0 chr12 112169070 112169262 -9088268 - B2_Mm1a SINE B2 0 193 2 4 1440 487 229 28 0 chr12 112170226 112170335 -9087195 - PB1D9 SINE Alu 0 120 9 4 1440 488 291 27 9 chr12 112170619 112170730 -9086800 - B1F SINE Alu -11 138 26 4 1440 556 198 198 0 chr12 112172369 112172485 -9085045 - B1_Mus2 SINE Alu -7 140 2 4 1440 1125 87 55 90 chr12 112172699 112172900 -9084630 + B2_Mm2 SINE B2 1 194 -1 4 1440 279 268 104 20 chr12 112172936 112173063 -9084467 - MIRc SINE MIR -114 162 24 4 1440 582 271 45 0 chr12 112173591 112173724 -9083806 + RSINE1 SINE B4 2 140 -25 4 1440 471 297 36 18 chr12 112174066 112174234 -9083296 - RMER30 DNA MER1_type -27 175 5 4 1440 599 197 74 22 chr12 112175221 112175356 -9082174 - B1F SINE Alu -1 148 7 4 1440 251 364 66 0 chr12 112176099 112176220 -9081310 - MIRb SINE MIR -21 247 119 4 1440 507 327 37 25 chr12 112178312 112178475 -9079055 + ID_B1 SINE B4 1 165 -59 4 1440 221 222 12 100 chr12 112178406 112178486 -9079044 + B1F SINE Alu 20 92 -57 4 1440 934 103 4 1 chr12 112178503 112178643 -9078887 + B2_Mm2 SINE B2 2 146 -47 4 1440 369 0 0 0 chr12 112178643 112178684 -9078846 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1440 796 215 33 11 chr12 112178684 112178726 -9078804 + B2_Mm1t SINE B2 147 188 -5 4 1440 292 260 19 111 chr12 112178897 112179005 -9078525 + MT2B LTR ERVL 157 254 -347 4 1440 669 224 60 0 chr12 112178910 112179044 -9078486 + B1_Mus1 SINE Alu 6 147 -1 4 1440 270 0 0 0 chr12 112180532 112180562 -9076968 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1440 609 297 42 12 chr12 112180733 112180970 -9076560 - B4A SINE B4 0 292 15 4 1440 921 151 204 11 chr12 112181103 112181284 -9076246 - B3 SINE B2 0 216 1 4 1440 582 278 73 0 chr12 112181764 112181915 -9075615 + RSINE1 SINE B4 4 165 0 4 1440 937 173 90 20 chr12 112182008 112182209 -9075321 + B3 SINE B2 2 216 0 4 1440 341 272 129 112 chr12 112183419 112183511 -9074019 + B4A SINE B4 2 81 -211 4 1440 926 147 14 7 chr12 112183511 112183655 -9073875 + B1_Mm SINE Alu 1 145 -2 4 1440 341 272 118 102 chr12 112183655 112183868 -9073662 + B4A SINE B4 78 292 0 4 1440 216 288 36 48 chr12 112183936 112184020 -9073510 + ID_B1 SINE B4 60 142 -82 4 1440 601 255 64 64 chr12 112184905 112185077 -9072453 + B3 SINE B2 42 213 -3 4 1440 686 169 130 8 chr12 112185102 112185233 -9072297 + B1_Mur3 SINE Alu 1 147 -2 4 1440 186 71 0 0 chr12 112185238 112185266 -9072264 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 4 1440 405 271 36 1 chr12 112185555 112185672 -9071858 + RMER1C Other Other 813 918 -424 4 1440 747 153 353 0 chr12 112188066 112188216 -9069314 - B3 SINE B2 -10 206 4 4 1440 768 22 0 0 chr12 112188217 112188307 -9069223 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 4 1440 714 252 0 26 chr12 112188335 112188486 -9069044 + RSINE1 SINE B4 4 150 -15 4 1440 3249 60 8 0 chr12 112188952 112189349 -9068181 - MTB LTR MaLR 0 400 1 4 1440 297 0 0 0 chr12 112189536 112189569 -9067961 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1440 287 216 115 83 chr12 112190167 112190263 -9067267 + PB1D7 SINE Alu 17 115 -5 4 1440 345 219 27 14 chr12 112190190 112190264 -9067266 + ID_B1 SINE B4 146 220 -4 4 1440 225 258 319 11 chr12 112190403 112190497 -9067033 + ID_B1 SINE B4 35 157 -67 4 1440 1059 76 0 34 chr12 112190497 112190646 -9066884 + B2_Mm2 SINE B2 2 145 -50 4 1440 185 35 0 65 chr12 112190652 112190683 -9066847 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1440 618 141 50 0 chr12 112190699 112190798 -9066732 + B1_Mur4 SINE Alu 47 150 0 4 1440 423 98 0 0 chr12 112190841 112190902 -9066628 + (TATG)n Simple_repeat Simple_repeat 3 63 0 4 1440 492 270 36 0 chr12 112190941 112191052 -9066478 + RSINE1 SINE B4 27 141 -24 4 1440 417 307 42 14 chr12 112191072 112191214 -9066316 + B3A SINE B2 52 197 -1 4 1440 24 0 0 0 chr12 112191269 112191293 -9066237 + AT_rich Low_complexity Low_complexity 1 24 0 4 1440 1118 196 34 0 chr12 112191307 112191516 -9066014 + B3 SINE B2 1 216 0 4 1440 376 305 28 9 chr12 112191566 112191672 -9065858 - PB1D10 SINE Alu -9 108 1 4 1440 310 292 65 13 chr12 112191674 112191833 -9065697 + L1MC LINE L1 5673 5841 -330 4 1440 257 232 93 31 chr12 112191937 112192066 -9065464 + L1ME2z LINE L1 6013 6149 -295 4 1440 288 0 0 0 chr12 112192372 112192404 -9065126 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1440 301 297 14 0 chr12 112193376 112193450 -9064080 - ID4_ SINE ID -7 76 2 4 1440 1013 231 14 9 chr12 112193721 112193931 -9063599 + B3 SINE B2 6 216 0 4 1440 1003 119 28 0 chr12 112193954 112194097 -9063433 + B1_Mur4 SINE Alu 2 148 -2 4 1440 382 286 29 29 chr12 112194525 112194662 -9062868 + B1F1 SINE Alu 1 137 -12 4 1440 432 243 51 51 chr12 112194673 112194790 -9062740 + ID_B1 SINE B4 107 223 -1 4 1440 450 237 98 8 chr12 112194806 112194938 -9062592 + B1_Mur2 SINE Alu 6 149 0 4 1440 556 295 139 33 chr12 112194974 112195549 -9061981 - L1MB7 LINE L1 -73 6111 5476 4 1440 279 0 0 0 chr12 112195573 112195604 -9061926 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 4 1440 272 202 31 0 chr12 112195607 112195669 -9061861 - B1_Mur1 SINE Alu -18 131 60 4 1440 525 16 0 0 chr12 112195775 112195837 -9061693 + (TTTC)n Simple_repeat Simple_repeat 4 65 0 4 1440 1158 65 0 0 chr12 112195839 112195977 -9061553 - B1_Mus1 SINE Alu -10 138 1 4 1440 306 353 28 35 chr12 112195985 112196126 -9061404 - L1MB7 LINE L1 -2322 3824 3685 4 1440 274 269 12 49 chr12 112196134 112196216 -9061314 + ID4 SINE ID 5 83 0 5 1440 291 289 21 0 chr12 112196231 112196328 -9061202 - L1MB7 LINE L1 -2531 3615 3517 4 1440 279 0 0 0 chr12 112196328 112196359 -9061171 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1440 480 221 95 0 chr12 112196362 112196457 -9061073 - B1_Mur1 SINE Alu -10 139 36 5 1440 434 349 0 32 chr12 112196476 112196630 -9060900 - B3A SINE B2 0 198 50 5 1440 232 294 73 67 chr12 112196723 112196887 -9060643 - RSINE1 SINE B4 0 165 1 5 1440 376 196 61 66 chr12 112196918 112197115 -9060415 - L1MB7 LINE L1 -2697 3449 3254 4 1440 355 231 50 107 chr12 112197193 112197314 -9060216 - PB1D7 SINE Alu -6 114 1 5 1440 504 258 29 76 chr12 112197314 112197386 -9060144 - B4A SINE B4 -220 72 9 5 1440 450 244 74 16 chr12 112197395 112197516 -9060014 - L1M2 LINE L1 -2887 3256 3129 5 1441 449 129 11 0 chr12 112198115 112198208 -9059322 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1441 351 65 0 0 chr12 112198461 112198507 -9059023 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 5 1441 668 156 304 25 chr12 112198510 112198668 -9058862 - B3 SINE B2 -14 202 1 5 1441 321 220 88 35 chr12 112198818 112198931 -9058599 - PB1D7 SINE Alu -1 119 1 5 1441 405 274 62 0 chr12 112198931 112199043 -9058487 - PB1D9 SINE Alu 0 120 1 5 1441 260 151 82 16 chr12 112200490 112200574 -9056956 - L1_Mm LINE L1 -1355 4525 4434 5 1441 197 33 33 0 chr12 112200657 112200687 -9056843 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 5 1441 1201 55 0 0 chr12 112200687 112200832 -9056698 - B1_Mus2 SINE Alu -1 146 2 5 1441 1442 63 17 0 chr12 112200835 112201010 -9056520 - B2_Mm2 SINE B2 -16 179 2 5 1441 899 156 258 0 chr12 112201071 112201238 -9056292 - B3 SINE B2 -6 210 1 5 1441 665 303 36 108 chr12 112201349 112201656 -9055874 - B4A SINE B4 -6 286 2 5 1441 524 225 42 42 chr12 112201679 112201823 -9055707 - B3 SINE B2 -1 215 72 5 1441 667 213 48 0 chr12 112201881 112202018 -9055512 - ID_B1 SINE B4 -12 212 70 5 1441 894 266 92 48 chr12 112202027 112202059 -9055471 - L1M2 LINE L1 -1794 4349 4318 5 1441 626 245 85 20 chr12 112202059 112202259 -9055271 - B3 SINE B2 -3 213 1 5 1441 1009 243 56 10 chr12 112202259 112202681 -9054849 - L1M2 LINE L1 -1826 4317 3844 5 1441 1499 41 46 0 chr12 112202697 112202892 -9054638 - RLTR1B LTR ERV1 0 512 309 5 1441 997 32 0 31 chr12 112202883 112203013 -9054517 - RLTR1B LTR ERV1 -386 126 1 5 1441 1264 271 54 31 chr12 112203015 112203683 -9053847 - L1M2 LINE L1 -2294 3849 3167 5 1441 315 0 0 0 chr12 112203696 112203731 -9053799 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1441 730 233 73 16 chr12 112203828 112204020 -9053510 - B4A SINE B4 -81 211 9 5 1441 741 160 22 28 chr12 112204609 112204750 -9052780 - B1_Mus1 SINE Alu -2 146 9 5 1441 343 321 88 53 chr12 112204648 112204819 -9052711 - MT2B LTR ERVL -337 264 88 5 1441 180 0 0 0 chr12 112204899 112204919 -9052611 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1441 570 103 0 0 chr12 112204922 112205000 -9052530 - B1_Mur3 SINE Alu -7 142 65 5 1441 242 158 0 0 chr12 112204973 112205011 -9052519 - ID_B1 SINE B4 -26 198 161 5 1441 351 66 0 51 chr12 112205138 112205200 -9052330 - ORR1A4 LTR MaLR -219 127 54 5 1441 261 139 0 0 chr12 112206693 112206736 -9050794 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1441 604 240 39 0 chr12 112206825 112206954 -9050576 + B1F1 SINE Alu 15 148 -1 5 1441 588 214 44 37 chr12 112208942 112209078 -9048452 - ID_B1 SINE B4 -2 222 86 5 1441 502 194 43 0 chr12 112209638 112209731 -9047799 + PB1D10 SINE Alu 17 113 -4 5 1441 1203 62 0 0 chr12 112209743 112209889 -9047641 + B1_Mus2 SINE Alu 1 146 -1 5 1441 225 225 141 0 chr12 112210185 112210256 -9047274 + ID4_ SINE ID 2 82 -1 5 1441 194 0 0 163 chr12 112210670 112210692 -9046838 + A-rich Low_complexity Low_complexity 1 16 0 5 1441 1197 68 0 0 chr12 112210692 112210839 -9046691 + B1_Mm SINE Alu 1 147 0 5 1441 194 0 0 163 chr12 112210839 112210859 -9046671 + A-rich Low_complexity Low_complexity 17 36 0 5 1441 901 143 209 11 chr12 112210898 112211075 -9046455 - B3 SINE B2 -4 212 1 5 1441 242 56 28 0 chr12 112211257 112211293 -9046237 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1441 462 214 237 8 chr12 112211294 112211412 -9046118 - RSINE1 SINE B4 -20 145 1 5 1441 337 248 6 208 chr12 112211618 112211801 -9045729 - B1_Mur3 SINE Alu -1 148 3 5 1441 620 274 124 21 chr12 112211801 112211882 -9045648 - ID_B1 SINE B4 -122 102 2 5 1441 934 218 67 5 chr12 112211905 112212099 -9045431 - B3 SINE B2 -10 206 1 5 1441 246 243 42 0 chr12 112216456 112216546 -9040984 - MIR SINE MIR -165 103 9 5 1441 27 81 0 0 chr12 112217212 112217274 -9040256 + GC_rich Low_complexity Low_complexity 1 62 0 5 1441 803 190 14 14 chr12 112217907 112218046 -9039484 + B1_Mm SINE Alu 1 139 -8 5 1441 1295 90 11 0 chr12 112218643 112218820 -9038710 - MT2B LTR ERVL 0 601 423 5 1441 3553 154 131 114 chr12 112218820 112219126 -9038404 + RMER19B LTR ERVK 1 233 -669 5 1441 261 0 0 0 chr12 112219126 112219155 -9038375 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1441 3553 154 131 114 chr12 112219155 112219723 -9037807 + RMER19B LTR ERVK 234 889 -13 5 1441 2865 121 45 7 chr12 112219732 112220150 -9037380 - MT2B LTR ERVL -167 434 1 5 1441 1234 55 146 0 chr12 112220399 112220564 -9036966 + B2_Mm2 SINE B2 2 190 -5 5 1441 426 121 0 0 chr12 112220711 112220777 -9036753 + (TCC)n Simple_repeat Simple_repeat 3 68 0 5 1441 3370 100 70 2 chr12 112220784 112221295 -9036235 + RMER2 LTR ERV1 22 567 0 5 1441 411 21 0 0 chr12 112221755 112221803 -9035727 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1441 307 247 111 0 chr12 112221843 112221924 -9035606 + B1F SINE Alu 9 98 -51 5 1441 633 273 24 24 chr12 112223220 112223385 -9034145 + RSINE1 SINE B4 1 165 0 5 1441 374 179 0 93 chr12 112224217 112224303 -9033227 - B3 SINE B2 -138 78 1 5 1441 342 0 0 0 chr12 112224309 112224347 -9033183 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1441 527 278 69 29 chr12 112224469 112224673 -9032857 - ID_B1 SINE B4 0 224 13 5 1441 228 323 99 37 chr12 112225744 112225905 -9031625 + B3A SINE B2 6 176 -22 5 1441 260 222 145 24 chr12 112226131 112226214 -9031316 + MLT1K LTR MaLR 459 551 -44 5 1441 974 189 74 5 chr12 112226501 112226703 -9030827 - B3 SINE B2 0 216 1 5 1441 1355 75 42 21 chr12 112226775 112226965 -9030565 + B2_Mm2 SINE B2 2 195 0 5 1441 291 85 0 0 chr12 112227030 112227077 -9030453 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 5 1441 348 249 9 178 chr12 112227079 112227416 -9030114 + L1_Mur3 LINE L1 5169 5482 -689 5 1441 891 170 0 20 chr12 112227783 112227933 -9029597 + B1_Mus1 SINE Alu 2 148 0 5 1441 1045 217 120 0 chr12 112228035 112228302 -9029228 + RMER15 LTR ERVL 275 573 -2 5 1441 745 206 0 0 chr12 112228747 112228883 -9028647 + B1_Mur1 SINE Alu 1 136 -13 5 1441 356 234 20 50 chr12 112229007 112229106 -9028424 - PB1D7 SINE Alu -2 118 23 5 1441 272 195 99 0 chr12 112229537 112229618 -9027912 + L2a LINE L2 3023 3112 -314 5 1441 225 0 0 0 chr12 112229658 112229683 -9027847 + (CCCCG)n Simple_repeat Simple_repeat 1 25 0 5 1441 432 111 267 20 chr12 112231625 112231726 -9025804 + B1_Mur1 SINE Alu 23 148 -1 5 1441 584 224 17 0 chr12 112231740 112231856 -9025674 + PB1D7 SINE Alu 3 120 0 5 1441 386 40 0 0 chr12 112231859 112231909 -9025621 + B2_Mm2 SINE B2 2 51 -144 5 1441 1399 50 79 1 chr12 112231907 112232110 -9025420 + ORR1A2 LTR MaLR 67 285 -42 5 1441 1130 68 7 27 chr12 112232110 112232260 -9025270 + B1_Mus1 SINE Alu 2 148 0 5 1441 1339 82 51 167 chr12 112232260 112232350 -9025180 + ORR1A2 LTR MaLR 285 326 0 5 1441 922 118 14 0 chr12 112232350 112232468 -9025062 + B2_Mm2 SINE B2 45 164 -31 5 1441 756 204 13 13 chr12 112233353 112233502 -9024028 + B1_Mur1 SINE Alu 1 149 0 5 1441 603 207 66 71 chr12 112233538 112233720 -9023810 + B3 SINE B2 33 213 -3 5 1441 29 78 0 0 chr12 112233730 112233794 -9023736 + AT_rich Low_complexity Low_complexity 1 64 0 5 1441 355 259 60 73 chr12 112233813 112233963 -9023567 + B3A SINE B2 47 194 -4 5 1441 302 284 33 33 chr12 112234087 112234207 -9023323 + PB1D7 SINE Alu 1 120 0 5 1441 1198 75 0 0 chr12 112234228 112234375 -9023155 + B1_Mm SINE Alu 1 147 0 5 1441 1012 118 207 6 chr12 112234385 112234564 -9022966 + B3 SINE B2 2 216 0 5 1441 28 22 0 22 chr12 112234568 112234586 -9022944 + AT_rich Low_complexity Low_complexity 1 18 0 5 1441 1367 89 11 0 chr12 112234586 112234766 -9022764 - B2_Mm1t SINE B2 -10 183 2 5 1441 28 22 0 22 chr12 112234766 112234793 -9022737 + AT_rich Low_complexity Low_complexity 1 27 0 5 1441 1129 82 7 0 chr12 112234801 112234948 -9022582 + B1_Mus1 SINE Alu 1 148 0 5 1441 589 155 19 0 chr12 112235049 112235152 -9022378 + B1_Mur3 SINE Alu 1 105 -44 5 1441 418 256 81 22 chr12 112235152 112235183 -9022347 + ID_B1 SINE B4 82 223 -1 5 1441 357 145 0 0 chr12 112235198 112235260 -9022270 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1441 279 217 0 48 chr12 112235263 112235326 -9022204 - ID4_ SINE ID -17 66 7 5 1441 797 223 138 36 chr12 112235348 112235543 -9021987 - B3 SINE B2 0 216 2 5 1441 520 132 288 34 chr12 112235557 112235675 -9021855 - B1_Mur4 SINE Alu 0 150 3 5 1441 315 0 0 0 chr12 112235701 112235736 -9021794 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1441 246 62 0 0 chr12 112235781 112235813 -9021717 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 5 1441 1106 94 11 23 chr12 112235813 112235987 -9021543 - B2_Mm2 SINE B2 0 195 24 5 1441 284 28 0 0 chr12 112235981 112236017 -9021513 - U2 snRNA snRNA -152 36 1 6 1441 258 100 0 0 chr12 112236017 112236057 -9021473 - B2_Mm2 SINE B2 -154 41 2 5 1441 1013 180 80 0 chr12 112236080 112236280 -9021250 - B3 SINE B2 0 216 1 6 1441 348 276 63 13 chr12 112236287 112236445 -9021085 + L1M5 LINE L1 5312 5477 -702 6 1441 691 153 7 51 chr12 112236450 112236588 -9020942 + B1_Mur3 SINE Alu 17 148 -1 6 1441 1223 48 0 0 chr12 112236624 112236769 -9020761 + B1_Mus2 SINE Alu 2 146 -1 6 1441 2399 155 107 14 chr12 112236771 112237255 -9020275 - RMER19B LTR ERVK -373 529 1 6 1441 928 241 51 24 chr12 112237287 112237618 -9019912 + RLTR15 LTR ERVK 1 340 -19 6 1441 680 241 54 36 chr12 112237632 112237823 -9019707 + B3A SINE B2 10 204 -12 6 1441 218 184 0 0 chr12 112237824 112237862 -9019668 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1441 27 0 0 0 chr12 112237870 112237897 -9019633 + AT_rich Low_complexity Low_complexity 1 27 0 6 1441 1168 62 7 0 chr12 112237907 112238052 -9019478 + B1_Mus2 SINE Alu 2 147 0 6 1441 218 183 189 40 chr12 112238073 112238147 -9019383 + B1F SINE Alu 14 98 -51 6 1441 257 253 103 21 chr12 112239053 112239150 -9018380 + MLT1M LTR MaLR 151 255 -417 6 1441 259 337 151 5 chr12 112239419 112239604 -9017926 + L1M3 LINE L1 5683 5894 -289 6 1441 513 244 7 112 chr12 112239659 112239811 -9017719 + B1_Mur1 SINE Alu 14 149 0 6 1441 417 175 143 19 chr12 112239814 112239919 -9017611 + B1_Mus2 SINE Alu 1 118 -29 6 1441 207 0 0 0 chr12 112240556 112240579 -9016951 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1441 231 280 0 0 chr12 112241184 112241259 -9016271 - ORSL DNA Tip100 -135 140 66 6 1441 342 283 80 0 chr12 112241323 112241436 -9016094 + B1F2 SINE Alu 5 126 -23 6 1441 1426 86 5 5 chr12 112241650 112241837 -9015693 + B2_Mm2 SINE B2 3 189 -6 6 1441 683 221 22 0 chr12 112241955 112242091 -9015439 + B1_Mur1 SINE Alu 10 148 -1 6 1441 732 271 0 21 chr12 112242127 112242319 -9015211 - B3 SINE B2 -28 188 1 6 1441 288 247 46 147 chr12 112242474 112242583 -9014947 + ID_B1 SINE B4 80 177 -47 6 1441 240 280 169 39 chr12 112242476 112242606 -9014924 + B1_Mur3 SINE Alu 1 147 -2 6 1441 404 233 86 19 chr12 112242908 112243013 -9014517 - PB1D7 SINE Alu -1 119 8 6 1441 495 263 0 0 chr12 112243034 112243148 -9014382 - ID_B1 SINE B4 0 224 111 6 1441 405 257 32 89 chr12 112243148 112243192 -9014338 - B1F1 SINE Alu 0 149 1 6 1441 248 282 10 0 chr12 112243207 112243275 -9014255 - MLT1F2 LTR MaLR -62 498 447 6 1441 367 168 56 0 chr12 112244631 112244774 -9012756 + (CTGGGG)n Simple_repeat Simple_repeat 3 153 0 6 1441 381 164 0 0 chr12 112245214 112245287 -9012243 + (CA)n Simple_repeat Simple_repeat 1 73 0 6 1441 399 41 0 0 chr12 112246172 112246221 -9011309 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1441 401 291 17 17 chr12 112248396 112248515 -9009015 + B1F1 SINE Alu 30 148 -1 6 1441 259 317 73 0 chr12 112248513 112248595 -9008935 + B4A SINE B4 1 88 -204 6 1441 689 199 20 33 chr12 112248603 112248754 -9008776 + B1_Mur1 SINE Alu 1 149 0 6 1441 192 77 0 0 chr12 112248754 112248780 -9008750 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1441 281 276 105 65 chr12 112248782 112248906 -9008624 + B4 SINE B4 104 232 -60 6 1441 208 333 0 24 chr12 112248906 112248938 -9008592 + (CATA)n Simple_repeat Simple_repeat 1 31 0 6 1441 3410 31 8 2 chr12 112248938 112249332 -9008198 + MTA_Mm LTR MaLR 1 396 0 6 1441 201 413 7 0 chr12 112249332 112249449 -9008081 + (CA)n Simple_repeat Simple_repeat 2 119 0 6 1441 769 200 27 7 chr12 112249466 112249612 -9007918 + B1F SINE Alu 1 149 0 6 1441 229 210 136 0 chr12 112249767 112249848 -9007682 + HAL1 LINE L1 1312 1403 -1104 6 1441 235 265 0 0 chr12 112249928 112249977 -9007553 + B1F SINE Alu 1 49 -100 6 1441 228 276 51 38 chr12 112249977 112250001 -9007529 + B4A SINE B4 89 155 -69 6 1441 320 219 0 0 chr12 112250679 112250743 -9006787 + ID_B1 SINE B4 161 224 0 6 1441 234 254 0 0 chr12 112250748 112250811 -9006719 + HAL1 LINE L1 1512 1574 -933 6 1441 795 148 67 0 chr12 112250827 112250962 -9006568 - B1_Mur4 SINE Alu -1 149 6 6 1441 349 338 44 24 chr12 112250966 112251172 -9006358 + HAL1 LINE L1 1559 1768 -739 6 1441 299 338 61 50 chr12 112251368 112251553 -9005977 - MLT1E2 LTR MaLR -84 596 348 6 1441 180 0 0 0 chr12 112251569 112251589 -9005941 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1441 1259 41 0 0 chr12 112251589 112251736 -9005794 - B1_Mus2 SINE Alu 0 147 1 6 1441 234 309 135 24 chr12 112251856 112251982 -9005548 - MLT1E2 LTR MaLR -420 140 1 6 1441 517 30 0 0 chr12 112252022 112252088 -9005442 + L1_Mus1 LINE L1 6502 6567 0 6 1441 1082 101 7 7 chr12 112252123 112252272 -9005258 + B1_Mur3 SINE Alu 1 149 0 6 1441 573 337 130 13 chr12 112252327 112252703 -9004827 + MT2A LTR ERVL 1 420 -113 6 1441 369 0 0 0 chr12 112252703 112252744 -9004786 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1441 459 0 0 0 chr12 112252744 112252794 -9004736 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1441 514 297 54 0 chr12 112252794 112252942 -9004588 - B3A SINE B2 -42 156 1 6 1441 337 238 470 42 chr12 112252969 112253123 -9004407 + B3 SINE B2 1 216 0 6 1441 1182 68 0 7 chr12 112253148 112253296 -9004234 + B1_Mus2 SINE Alu 1 147 0 6 1441 652 104 37 0 chr12 112253516 112253650 -9003880 + (TA)n Simple_repeat Simple_repeat 1 139 0 6 1441 695 147 82 37 chr12 112253651 112253785 -9003745 - B1_Mur4 SINE Alu -7 143 4 6 1441 21 0 0 0 chr12 112254591 112254612 -9002918 + GC_rich Low_complexity Low_complexity 1 21 0 6 1441 310 279 51 0 chr12 112254702 112254781 -9002749 + RSINE1 SINE B4 81 163 -2 6 1441 505 184 124 55 chr12 112254842 112255043 -9002487 + RMER15 LTR ERVL 346 560 -15 6 1441 705 99 0 0 chr12 112255041 112255142 -9002388 + B1_Mus2 SINE Alu 47 147 0 6 1441 22 0 0 0 chr12 112255576 112255598 -9001932 + AT_rich Low_complexity Low_complexity 1 22 0 6 1441 322 243 45 64 chr12 112255632 112255742 -9001788 + B1_Mur1 SINE Alu 41 148 -1 6 1441 355 248 7 193 chr12 112255748 112255786 -9001744 + B3A SINE B2 2 39 -159 6 1441 904 122 244 0 chr12 112255786 112255942 -9001588 + B2_Mm2 SINE B2 1 194 -1 6 1441 355 248 52 181 chr12 112255942 112256098 -9001432 + B3A SINE B2 40 195 0 6 1441 615 211 89 8 chr12 112256102 112256226 -9001304 + B1_Mm SINE Alu 1 134 -13 6 1441 284 295 13 0 chr12 112256265 112256343 -9001187 + ID SINE ID 4 82 -142 6 1441 1274 267 139 5 chr12 112256374 112256742 -9000788 + MTE-int LTR MaLR 770 1187 -393 6 1441 1871 138 94 35 chr12 112256742 112257129 -9000401 + RMER10A LTR ERVL 1 413 -29 6 1441 189 0 0 0 chr12 112257129 112257150 -9000380 + (TTTCC)n Simple_repeat Simple_repeat 3 23 0 6 1441 1871 138 94 35 chr12 112257150 112257167 -9000363 + RMER10A LTR ERVL 414 429 -13 6 1441 1007 263 118 6 chr12 112257181 112257510 -9000020 + MTE-int LTR MaLR 1194 1559 -21 6 1441 795 144 0 19 chr12 112257515 112257661 -8999869 + B1_Mur4 SINE Alu 9 149 -1 6 1441 942 312 32 11 chr12 112257705 112257990 -8999540 + B4A SINE B4 2 292 0 6 1441 533 244 14 64 chr12 112258035 112258175 -8999355 + B1_Mm SINE Alu 1 133 -14 6 1441 219 69 0 0 chr12 112258175 112258204 -8999326 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6 1441 467 307 10 154 chr12 112258225 112258433 -8999097 + ID_B1 SINE B4 14 191 -33 6 1441 517 316 15 0 chr12 112258457 112258593 -8998937 + B1_Mur2 SINE Alu 5 142 -7 6 1441 1125 260 124 15 chr12 112258767 112259106 -8998424 + MTEa LTR MaLR 1 376 -3 6 1441 391 323 47 30 chr12 112259763 112259931 -8997599 - MLT2B5 LTR ERVL -228 326 162 6 1441 237 65 0 0 chr12 112259972 112260003 -8997527 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1441 885 178 0 0 chr12 112260106 112260252 -8997278 - B1_Mus1 SINE Alu 0 148 3 6 1441 351 113 0 0 chr12 112260258 112260311 -8997219 + (CAA)n Simple_repeat Simple_repeat 1 53 0 6 1441 309 239 161 43 chr12 112260315 112260477 -8997053 - L1M4 LINE L1 -375 5803 5623 6 1441 1209 185 10 10 chr12 112260701 112260908 -8996622 - B3 SINE B2 -7 209 3 6 1441 363 96 0 0 chr12 112260908 112260960 -8996570 + (TTTTC)n Simple_repeat Simple_repeat 2 53 0 6 1441 220 299 30 0 chr12 112260970 112260984 -8996546 + B4 SINE B4 72 140 -152 6 1441 234 170 38 0 chr12 112260984 112261037 -8996493 + B1_Mus2 SINE Alu 1 55 -92 6 1441 595 172 0 0 chr12 112261107 112261206 -8996324 + B1_Mur3 SINE Alu 42 140 -9 6 1441 315 0 0 0 chr12 112261206 112261241 -8996289 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1441 403 279 0 54 chr12 112261368 112261516 -8996014 + HAL1-3A_ME LINE L1 1974 2113 -745 6 1441 461 264 140 43 chr12 112261617 112261874 -8995656 - B4 SINE B4 -3 289 8 6 1441 192 40 0 0 chr12 112261957 112261982 -8995548 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1441 672 48 0 0 chr12 112262280 112262364 -8995166 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 6 1441 239 350 41 0 chr12 112262535 112262632 -8994898 - MLT1I LTR MaLR -227 184 84 6 1441 780 205 101 90 chr12 112262895 112263163 -8994367 - MER58B DNA MER1_type -1 340 70 6 1441 416 271 0 30 chr12 112263144 112263243 -8994287 + PB1D10 SINE Alu 7 102 -15 6 1441 246 32 0 0 chr12 112263250 112263281 -8994249 + (GGA)n Simple_repeat Simple_repeat 3 33 0 6 1441 584 159 469 0 chr12 112263283 112263428 -8994102 + B3 SINE B2 3 215 -1 6 1441 286 279 0 25 chr12 112263481 112263562 -8993968 + B4 SINE B4 7 85 -207 6 1441 274 242 20 71 chr12 112263562 112263577 -8993953 + B3A SINE B2 8 98 -100 6 1441 903 133 137 12 chr12 112263630 112263798 -8993732 - B2_Mm2 SINE B2 -5 190 2 6 1441 816 144 14 7 chr12 112263803 112263943 -8993587 - B1_Mur3 SINE Alu 0 149 9 6 1441 405 258 82 117 chr12 112263931 112264055 -8993475 + B4A SINE B4 92 202 -90 6 1441 1280 41 0 0 chr12 112264055 112264202 -8993328 - B1_Mm SINE Alu 0 147 1 7 1441 405 258 82 117 chr12 112264202 112264283 -8993247 + B4A SINE B4 203 290 -2 6 1441 358 279 83 14 chr12 112264681 112264863 -8992667 - L1MB7 LINE L1 -148 6020 5831 7 1441 862 131 0 0 chr12 112264979 112265109 -8992421 + B1_Mus1 SINE Alu 10 139 -9 7 1441 213 42 19 94 chr12 112265118 112265171 -8992359 + A-rich Low_complexity Low_complexity 6 54 0 7 1441 374 134 15 0 chr12 112265178 112265245 -8992285 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 1441 931 255 29 5 chr12 112265282 112265491 -8992039 - B3 SINE B2 0 216 3 7 1441 860 155 7 33 chr12 112265638 112265791 -8991739 - B1_Mur3 SINE Alu 0 149 1 7 1441 752 303 9 63 chr12 112265794 112266016 -8991514 - ID_B1 SINE B4 -7 217 8 7 1441 199 0 65 0 chr12 112266104 112266135 -8991395 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1441 1187 41 7 0 chr12 112266136 112266281 -8991249 - B1_Mus1 SINE Alu -1 147 2 7 1441 281 102 41 0 chr12 112267252 112267301 -8990229 + (TTTTC)n Simple_repeat Simple_repeat 3 53 0 7 1441 293 146 0 0 chr12 112267301 112267349 -8990181 - ID_B1 SINE B4 0 224 177 7 1441 458 270 9 35 chr12 112268477 112268592 -8988938 + PB1D10 SINE Alu 6 117 0 7 1441 188 133 44 0 chr12 112268606 112268651 -8988879 + A-rich Low_complexity Low_complexity 1 47 0 7 1441 240 35 0 0 chr12 112268732 112268761 -8988769 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 7 1441 608 181 16 72 chr12 112269178 112269303 -8988227 - PB1D9 SINE Alu 0 120 3 7 1441 636 200 17 0 chr12 112269316 112269436 -8988094 - ID_B1 SINE B4 -99 125 4 7 1441 1126 206 0 27 chr12 112269454 112269674 -8987856 - B3 SINE B2 0 216 3 7 1441 1177 65 0 0 chr12 112269754 112269893 -8987637 - B1_Mus2 SINE Alu -8 139 1 7 1441 486 243 139 28 chr12 112269944 112270088 -8987442 + RSINE1 SINE B4 6 165 0 7 1441 194 33 0 62 chr12 112270093 112270125 -8987405 + (CAGAGA)n Simple_repeat Simple_repeat 6 35 0 7 1441 561 316 119 41 chr12 112270285 112270329 -8987201 - L1M4 LINE L1 -363 5821 5779 7 1441 1274 92 37 21 chr12 112270329 112270517 -8987013 - B2_Mm2 SINE B2 -3 192 2 7 1441 561 320 120 40 chr12 112270517 112270831 -8986699 - L1M4 LINE L1 -2007 5778 5431 7 1441 232 274 0 176 chr12 112270913 112271015 -8986515 + B1_Mur2 SINE Alu 64 147 -2 7 1441 322 194 59 79 chr12 112271097 112271198 -8986332 - L1M4 LINE L1 -1078 5068 4970 7 1441 413 97 14 0 chr12 112271424 112271496 -8986034 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 7 1441 952 39 0 16 chr12 112271496 112271625 -8985905 - B1_Mm SINE Alu 0 147 21 7 1441 31 0 0 24 chr12 112271763 112271786 -8985744 + AT_rich Low_complexity Low_complexity 1 23 0 7 1441 2064 43 4 16 chr12 112271786 112272043 -8985487 - L1_Mus1 LINE L1 0 6567 6314 7 1441 31 0 0 24 chr12 112272043 112272061 -8985469 + AT_rich Low_complexity Low_complexity 1 18 0 7 1441 768 207 68 11 chr12 112272072 112272248 -8985282 - ID_B1 SINE B4 -33 191 6 7 1441 925 47 158 0 chr12 112272350 112272477 -8985053 + B1_Mus2 SINE Alu 1 147 0 7 1441 195 415 0 56 chr12 112272488 112272631 -8984899 + MIR SINE MIR 48 182 -80 7 1441 671 167 0 0 chr12 112272634 112272748 -8984782 + B1_Mur2 SINE Alu 23 136 -13 7 1441 198 0 0 0 chr12 112272749 112272771 -8984759 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 7 1441 244 333 86 0 chr12 112273712 112273922 -8983608 - L2 LINE L2 -1413 2006 1779 7 1441 367 224 36 45 chr12 112274337 112274443 -8983087 + B1F1 SINE Alu 39 143 -6 7 1441 228 35 0 0 chr12 112274443 112274472 -8983058 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1441 310 270 0 66 chr12 112274647 112274748 -8982782 + PB1D7 SINE Alu 20 114 -6 7 1441 435 340 85 66 chr12 112274755 112274966 -8982564 + B3A SINE B2 1 215 -1 7 1441 209 161 0 88 chr12 112274977 112275002 -8982528 + A-rich Low_complexity Low_complexity 1 21 0 7 1441 1031 110 0 58 chr12 112275002 112275139 -8982391 + B1_Mus2 SINE Alu 1 137 -10 7 1441 312 48 0 0 chr12 112275139 112275181 -8982349 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 7 1441 1031 110 0 58 chr12 112275181 112275197 -8982333 + B1_Mus2 SINE Alu 138 145 -2 7 1441 209 161 0 88 chr12 112275197 112275212 -8982318 + A-rich Low_complexity Low_complexity 22 35 0 7 1441 198 71 0 0 chr12 112275212 112275240 -8982290 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 7 1441 203 235 0 34 chr12 112275240 112275328 -8982202 + (CAAA)n Simple_repeat Simple_repeat 2 86 0 7 1441 258 322 11 11 chr12 112275375 112275463 -8982067 + ID_B1 SINE B4 131 218 -6 7 1441 26 0 0 0 chr12 112276440 112276466 -8981064 + AT_rich Low_complexity Low_complexity 1 26 0 7 1441 231 175 31 16 chr12 112277700 112277764 -8979766 + (CCCG)n Simple_repeat Simple_repeat 4 68 0 7 1441 22 0 0 0 chr12 112277793 112277815 -8979715 + GC_rich Low_complexity Low_complexity 1 22 0 7 1441 384 171 0 0 chr12 112277879 112277990 -8979540 + (CCG)n Simple_repeat Simple_repeat 2 112 0 7 1441 22 56 0 0 chr12 112278109 112278145 -8979385 + GC_rich Low_complexity Low_complexity 1 36 0 7 1441 489 127 0 0 chr12 112278628 112278707 -8978823 + (CATCC)n Simple_repeat Simple_repeat 3 81 0 7 1441 297 301 48 10 chr12 112279975 112280079 -8977451 - B1F SINE Alu 0 149 42 7 1441 215 196 22 0 chr12 112280163 112280209 -8977321 - ID4_ SINE ID -1 82 36 7 1441 884 98 105 0 chr12 112280507 112280640 -8976890 - B1_Mus1 SINE Alu 0 148 2 7 1441 719 184 13 52 chr12 112280643 112280798 -8976732 - B1_Mur2 SINE Alu 0 149 1 7 1441 417 114 98 43 chr12 112280878 112280970 -8976560 - B1_Mus2 SINE Alu -11 136 40 7 1441 844 208 54 11 chr12 112280991 112281176 -8976354 - B3 SINE B2 -20 196 4 7 1441 1160 68 7 0 chr12 112281220 112281366 -8976164 + B1_Mus1 SINE Alu 2 148 0 7 1441 522 178 366 25 chr12 112281382 112281543 -8975987 + B3 SINE B2 1 216 0 7 1441 359 197 42 0 chr12 112281567 112281638 -8975892 + PB1D10 SINE Alu 2 75 -42 7 1441 263 250 9 96 chr12 112281742 112281857 -8975673 + B4A SINE B4 184 288 -4 7 1441 440 254 180 0 chr12 112282002 112282124 -8975406 - B1_Mur2 SINE Alu -5 144 1 7 1441 1130 72 0 0 chr12 112282185 112282323 -8975207 - B1_Mus1 SINE Alu -9 139 2 7 1441 348 274 8 49 chr12 112282389 112282512 -8975018 - PB1D7 SINE Alu 0 120 3 7 1441 233 286 130 20 chr12 112282587 112282687 -8974843 - PB1D7 SINE Alu 0 120 10 7 1441 973 139 39 44 chr12 112283208 112283389 -8974141 - B2_Mm2 SINE B2 -14 181 2 7 1441 313 97 327 9 chr12 112283421 112283534 -8973996 - B2_Mm2 SINE B2 0 195 47 7 1441 223 238 127 0 chr12 112283612 112283675 -8973855 - RSINE1 SINE B4 -60 105 35 7 1441 412 221 23 0 chr12 112283732 112283818 -8973712 - ID SINE ID -135 89 2 7 1441 1226 35 0 0 chr12 112283961 112284105 -8973425 - B1_Mus1 SINE Alu 0 148 5 7 1441 378 42 0 0 chr12 112284537 112284585 -8972945 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 7 1441 306 297 144 0 chr12 112284587 112284705 -8972825 - RSINE1 SINE B4 -29 136 2 7 1441 404 218 99 0 chr12 112284705 112284804 -8972726 - ID_B1 SINE B4 -33 191 83 7 1441 22 70 0 0 chr12 112285094 112285137 -8972393 + AT_rich Low_complexity Low_complexity 1 43 0 7 1441 322 288 18 46 chr12 112285137 112285246 -8972284 + PB1D7 SINE Alu 6 111 -9 7 1441 367 284 16 65 chr12 112285276 112285444 -8972086 + B3A SINE B2 35 196 -2 7 1441 709 151 8 0 chr12 112285562 112285681 -8971849 - B1_Mus1 SINE Alu -27 121 2 7 1441 253 321 67 7 chr12 112285711 112285846 -8971684 - LTR16B LTR ERVL -35 428 286 7 1441 342 208 39 0 chr12 112285948 112286025 -8971505 - ID4 SINE ID -2 81 2 7 1441 254 59 98 0 chr12 112286225 112286276 -8971254 + B2_Mm2 SINE B2 132 187 -8 7 1441 552 208 312 6 chr12 112286287 112286447 -8971083 - B3 SINE B2 -6 210 2 7 1441 312 291 68 0 chr12 112286479 112286582 -8970948 - ID_B1 SINE B4 -17 207 98 7 1441 330 221 115 0 chr12 112286634 112286738 -8970792 - B1_Mus1 SINE Alu -12 136 21 7 1441 1166 48 0 7 chr12 112286758 112286904 -8970626 - B1_Mus2 SINE Alu -1 146 2 7 1441 541 272 98 10 chr12 112287045 112287238 -8970292 - B3 SINE B2 -6 210 1 7 1441 324 0 0 0 chr12 112287300 112287336 -8970194 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1441 453 141 0 0 chr12 112287336 112287421 -8970109 + (GA)n Simple_repeat Simple_repeat 2 86 0 7 1441 1036 76 0 0 chr12 112287444 112287576 -8969954 + B1_Mus2 SINE Alu 2 133 -14 7 1441 520 172 190 0 chr12 112287744 112287860 -8969670 - B1_Mur1 SINE Alu -6 143 6 7 1441 272 246 172 60 chr12 112287860 112287878 -8969652 - ID_B1 SINE B4 -6 218 70 7 1441 221 318 0 0 chr12 112287876 112287942 -8969588 - B1F1 SINE Alu -8 141 76 7 1441 509 140 19 48 chr12 112289012 112289117 -8968413 + PB1D9 SINE Alu 19 120 0 7 1441 315 0 0 0 chr12 112289274 112289309 -8968221 + (TATG)n Simple_repeat Simple_repeat 4 38 0 7 1441 841 145 23 0 chr12 112289309 112289440 -8968090 - B1_Mus1 SINE Alu -14 134 1 7 1441 244 261 89 22 chr12 112289440 112289530 -8968000 - PB1D10 SINE Alu -4 113 18 7 1441 341 250 177 49 chr12 112289676 112289840 -8967690 - B3A SINE B2 -13 185 1 7 1441 226 333 0 33 chr12 112290015 112290105 -8967425 + PB1D10 SINE Alu 10 96 -21 7 1441 1227 52 104 6 chr12 112290308 112290481 -8967049 + B2_Mm2 SINE B2 2 191 -4 7 1441 518 225 180 0 chr12 112290518 112290718 -8966812 + Tigger2b DNA MER2_type 2 237 -489 7 1441 360 234 103 0 chr12 112290720 112290827 -8966703 + B1F1 SINE Alu 1 118 -31 7 1441 327 49 0 0 chr12 112290847 112290888 -8966642 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1441 276 282 0 45 chr12 112291167 112291256 -8966274 + Tigger2b DNA MER2_type 485 569 -157 7 1441 747 172 52 58 chr12 112291547 112291689 -8965841 - B3 SINE B2 -13 203 62 8 1441 1149 73 70 43 chr12 112291689 112291875 -8965655 - B2_Mm2 SINE B2 -4 191 1 8 1441 747 172 52 58 chr12 112291875 112291923 -8965607 - B3 SINE B2 -155 61 14 8 1441 721 234 111 11 chr12 112291956 112292146 -8965384 + B3 SINE B2 1 209 -7 8 1441 932 48 136 0 chr12 112292146 112292270 -8965260 + B1_Mus1 SINE Alu 1 142 -6 8 1441 220 71 0 0 chr12 112292270 112292298 -8965232 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 8 1441 646 76 134 0 chr12 112292298 112292455 -8965075 + GA-rich Low_complexity Low_complexity 3 180 0 8 1441 334 196 0 75 chr12 112292611 112292705 -8964825 + ID_B1 SINE B4 130 216 -8 8 1441 195 69 0 0 chr12 112292709 112292738 -8964792 + (CAAAC)n Simple_repeat Simple_repeat 3 31 0 8 1441 344 207 87 28 chr12 112292846 112292953 -8964577 - B3 SINE B2 -3 195 76 8 1441 873 126 167 6 chr12 112293014 112293182 -8964348 - B2_Mm2 SINE B2 0 195 1 8 1441 260 347 20 0 chr12 112293183 112293281 -8964249 - ID_B1 SINE B4 -69 155 56 8 1441 515 302 34 0 chr12 112293377 112293526 -8964004 - RSINE1 SINE B4 -9 156 3 8 1441 33 0 0 0 chr12 112293548 112293581 -8963949 + AT_rich Low_complexity Low_complexity 1 33 0 8 1441 878 158 7 0 chr12 112293907 112294053 -8963477 - B1_Mus1 SINE Alu -1 147 1 8 1441 279 113 0 0 chr12 112294149 112294202 -8963328 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1441 381 305 9 19 chr12 112294210 112294317 -8963213 - B3 SINE B2 -57 159 54 8 1441 245 257 42 14 chr12 112294309 112294380 -8963150 - ID_B1 SINE B4 -58 166 94 8 1441 26 30 0 0 chr12 112294499 112294532 -8962998 + AT_rich Low_complexity Low_complexity 1 33 0 8 1441 46 19 0 0 chr12 112294927 112294980 -8962550 + AT_rich Low_complexity Low_complexity 1 53 0 8 1441 1183 143 38 5 chr12 112295606 112295817 -8961713 - URR1A DNA MER1_type 0 226 9 8 1441 513 167 31 0 chr12 112295838 112295934 -8961596 + B1_Mus2 SINE Alu 48 146 -1 8 1441 450 0 0 0 chr12 112296054 112296104 -8961426 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 1441 324 0 0 0 chr12 112296104 112296139 -8961391 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1441 382 109 16 0 chr12 112296509 112296573 -8960957 - B1_Mur4 SINE Alu -23 127 63 8 1441 201 152 0 0 chr12 112296804 112296837 -8960693 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1441 284 282 11 23 chr12 112297433 112297520 -8960010 - RSINE1 SINE B4 -79 86 1 8 1441 212 163 0 0 chr12 112297891 112297934 -8959596 + T-rich Low_complexity Low_complexity 3 45 0 8 1441 504 152 20 61 chr12 112297974 112298072 -8959458 + B1_Mur3 SINE Alu 55 148 -1 8 1441 602 100 10 0 chr12 112298097 112298197 -8959333 + (TG)n Simple_repeat Simple_repeat 2 102 0 8 1441 323 247 26 0 chr12 112298212 112298289 -8959241 - B3A SINE B2 -44 154 76 8 1441 601 283 83 9 chr12 112298324 112298552 -8958978 - B4A SINE B4 -47 245 1 8 1441 401 240 94 23 chr12 112298940 112299068 -8958462 - B1_Mm SINE Alu -8 139 3 8 1441 1177 54 0 26 chr12 112299109 112299260 -8958270 - B1_Mus2 SINE Alu 0 147 1 8 1441 243 0 0 0 chr12 112299838 112299865 -8957665 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 8 1441 306 0 0 0 chr12 112299896 112299930 -8957600 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 8 1441 192 40 0 0 chr12 112299964 112299989 -8957541 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 8 1441 273 329 65 26 chr12 112300083 112300236 -8957294 - RSINE1 SINE B4 -5 160 2 8 1441 231 224 262 0 chr12 112300730 112300826 -8956704 + B1F2 SINE Alu 12 129 -19 8 1441 1415 74 16 5 chr12 112300853 112300882 -8956648 - B2_Mm1t SINE B2 -1 192 162 8 1441 207 0 0 0 chr12 112300882 112300905 -8956625 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1441 1415 74 16 5 chr12 112300905 112301065 -8956465 - B2_Mm1t SINE B2 -32 161 2 8 1441 1346 64 23 0 chr12 112301292 112301463 -8956067 - B2_Mm2 SINE B2 -19 176 2 8 1441 956 65 7 35 chr12 112301564 112301707 -8955823 + B1_Mus1 SINE Alu 10 148 0 8 1441 273 57 0 0 chr12 112301707 112301742 -8955788 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1441 424 155 32 7 chr12 112301945 112302061 -8955469 - B1_Mm SINE Alu 0 147 30 8 1441 203 220 0 20 chr12 112302066 112302117 -8955413 + (TTAA)n Simple_repeat Simple_repeat 3 52 0 8 1441 262 207 68 17 chr12 112302726 112302785 -8954745 + ID4 SINE ID 22 83 0 8 1441 1620 44 0 0 chr12 112302797 112303160 -8954370 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 8 1441 419 145 40 0 chr12 112303608 112303684 -8953846 - B3A SINE B2 -119 79 1 8 1441 298 213 40 60 chr12 112303805 112303905 -8953625 - L1MC4 LINE L1 -1170 6872 6775 8 1441 1137 75 0 0 chr12 112303905 112304051 -8953479 + B1_Mus2 SINE Alu 2 147 0 8 1441 216 97 0 0 chr12 112304051 112304082 -8953448 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1441 376 209 68 25 chr12 112304349 112304467 -8953063 - B3A SINE B2 -71 124 2 8 1441 322 296 81 29 chr12 112304527 112304663 -8952867 - ID_B1 SINE B4 0 224 82 8 1441 213 226 0 0 chr12 112304846 112304899 -8952631 + A-rich Low_complexity Low_complexity 1 53 0 8 1441 423 118 316 35 chr12 112305101 112305215 -8952315 - B2_Mm1t SINE B2 0 193 48 8 1441 929 90 215 0 chr12 112305259 112305403 -8952127 - B2_Mm1a SINE B2 -16 177 3 8 1441 221 151 0 19 chr12 112305414 112305468 -8952062 + T-rich Low_complexity Low_complexity 2 54 0 8 1441 733 78 0 0 chr12 112305470 112305572 -8951958 - B1_Mm SINE Alu 0 147 46 8 1441 694 210 28 28 chr12 112305577 112305719 -8951811 - B1_Mus1 SINE Alu -5 143 2 8 1441 818 86 117 0 chr12 112306605 112306733 -8950797 + B1_Mus1 SINE Alu 5 147 -1 8 1441 302 302 83 23 chr12 112306757 112306889 -8950641 - B1F1 SINE Alu -9 140 1 8 1441 624 144 0 56 chr12 112306889 112307002 -8950528 + B1_Mus2 SINE Alu 42 147 0 8 1441 183 42 0 0 chr12 112307105 112307129 -8950401 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 1441 288 0 0 0 chr12 112307187 112307219 -8950311 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1441 252 0 0 0 chr12 112307219 112307246 -8950284 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1441 266 274 20 20 chr12 112307516 112307665 -8949865 + (TG)n Simple_repeat Simple_repeat 1 149 0 8 1441 272 264 28 22 chr12 112307711 112307889 -8949641 + (TG)n Simple_repeat Simple_repeat 1 179 0 8 1441 433 246 77 0 chr12 112307907 112308037 -8949493 - RSINE1 SINE B4 -1 164 25 8 1441 237 33 0 0 chr12 112308066 112308096 -8949434 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 8 1441 1332 97 0 21 chr12 112308165 112308355 -8949175 - B2_Mm2 SINE B2 -9 186 1 8 1441 408 301 113 27 chr12 112308441 112308591 -8948939 - RSINE1 SINE B4 0 165 3 8 1441 495 62 0 24 chr12 112308716 112308799 -8948731 + L1Md_F2 LINE L1 6502 6582 0 8 1441 1372 82 22 0 chr12 112308953 112309137 -8948393 - B2_Mm2 SINE B2 -6 189 2 8 1441 226 249 14 58 chr12 112309496 112309596 -8947934 + PB1 SINE Alu 21 127 0 8 1441 232 211 35 17 chr12 112309636 112309694 -8947836 + B3 SINE B2 29 87 -129 8 1441 319 290 50 0 chr12 112309806 112309906 -8947624 + B3 SINE B2 105 209 -7 8 1441 333 217 14 0 chr12 112311075 112311144 -8946386 - ID_B1 SINE B4 -19 205 136 8 1441 607 84 10 10 chr12 112311361 112311392 -8946138 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 8 1441 1247 84 6 0 chr12 112311392 112311570 -8945960 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 8 1441 607 84 10 10 chr12 112311570 112311634 -8945896 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 8 1441 1156 96 11 0 chr12 112311637 112311814 -8945716 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 8 1441 245 243 93 13 chr12 112312643 112312718 -8944812 - L1MC3 LINE L1 -21 7764 7684 8 1441 504 243 81 22 chr12 112312744 112312929 -8944601 - L1MC3 LINE L1 -273 7512 7317 8 1441 180 97 0 0 chr12 112312978 112313009 -8944521 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 8 1441 797 178 59 0 chr12 112313014 112313166 -8944364 - B3 SINE B2 -55 161 1 8 1441 921 128 16 4 chr12 112313271 112313552 -8943978 - RMER16 LTR ERVK -83 450 133 8 1441 401 260 356 10 chr12 112313865 112314151 -8943379 - RCHARR1 DNA MER1_type -523 451 67 8 1441 1581 37 16 0 chr12 112314268 112314456 -8943074 - B2_Mm1t SINE B2 -2 191 1 8 1441 1282 67 0 22 chr12 112315438 112315621 -8941909 - B2_Mm1a SINE B2 -4 189 11 8 1441 393 214 316 30 chr12 112315695 112315955 -8941575 - ORR1D1 LTR MaLR -11 373 2 8 1441 414 0 0 0 chr12 112316134 112316180 -8941350 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 8 1441 1178 79 0 6 chr12 112316180 112316340 -8941190 - B2_Mm2 SINE B2 -31 164 5 8 1441 207 0 0 0 chr12 112316390 112316413 -8941117 + (CTG)n Simple_repeat Simple_repeat 2 24 0 8 1441 345 100 0 0 chr12 112316411 112316461 -8941069 + (TCC)n Simple_repeat Simple_repeat 3 52 0 8 1441 3081 92 116 16 chr12 112316752 112317236 -8940294 - Lx LINE L1 -6 6648 6117 8 1441 515 238 67 30 chr12 112317256 112317390 -8940140 - B3 SINE B2 -4 212 74 8 1441 266 167 38 13 chr12 112317392 112317440 -8940090 + T-rich Low_complexity Low_complexity 36 83 0 8 1441 897 155 0 13 chr12 112317440 112317590 -8939940 - B1_Mus1 SINE Alu 0 148 1 8 1441 266 167 38 13 chr12 112317590 112317620 -8939910 + T-rich Low_complexity Low_complexity 4 35 0 8 1441 264 287 126 50 chr12 112317620 112317921 -8939609 + L1M5 LINE L1 5321 5644 -535 8 1441 254 29 29 0 chr12 112318078 112318113 -8939417 + (TTTTTA)n Simple_repeat Simple_repeat 3 38 0 8 1441 398 206 45 36 chr12 112318214 112318325 -8939205 - B1_Mur1 SINE Alu -23 126 15 8 1441 432 280 177 7 chr12 112318367 112318649 -8938881 - L1MC4 LINE L1 -1033 7009 6635 8 1441 435 330 58 0 chr12 112319258 112319431 -8938099 + MLT1A1 LTR MaLR 8 190 -218 8 1441 747 189 34 20 chr12 112319496 112319642 -8937888 + B1_Mur1 SINE Alu 2 149 0 9 1441 24 0 0 0 chr12 112319775 112319799 -8937731 + AT_rich Low_complexity Low_complexity 1 24 0 9 1441 468 0 0 0 chr12 112320233 112320285 -8937245 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1441 207 122 0 68 chr12 112320809 112320853 -8936677 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 9 1441 955 142 0 26 chr12 112321113 112321265 -8936265 - B1_Mur4 SINE Alu 0 150 3 9 1441 296 98 0 73 chr12 112321267 112321322 -8936208 - B1_Mur4 SINE Alu -97 53 3 9 1441 265 143 20 0 chr12 112321324 112321373 -8936157 - B1_Mus2 SINE Alu -95 52 3 9 1441 1229 61 0 0 chr12 112321462 112321609 -8935921 + B1_Mus2 SINE Alu 1 147 0 9 1441 1752 110 67 0 chr12 112321672 112321971 -8935559 - ORR1A2 LTR MaLR -8 319 1 9 1441 450 137 21 10 chr12 112322158 112322254 -8935276 + (TA)n Simple_repeat Simple_repeat 2 98 0 9 1441 210 37 0 0 chr12 112322254 112322281 -8935249 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1441 21 36 0 0 chr12 112322427 112322455 -8935075 + AT_rich Low_complexity Low_complexity 1 28 0 9 1441 405 196 9 97 chr12 112322532 112322564 -8934966 - ID_B1 SINE B4 -121 103 73 9 1441 216 0 0 0 chr12 112322564 112322588 -8934942 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1441 405 196 9 97 chr12 112322588 112322668 -8934862 - ID SINE ID -152 72 1 9 1441 551 292 75 29 chr12 112322670 112322843 -8934687 - B3A SINE B2 -14 184 4 9 1441 297 0 0 0 chr12 112323353 112323386 -8934144 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 9 1441 1119 106 0 0 chr12 112323386 112323546 -8933984 - B2_Mm2 SINE B2 -34 161 2 9 1441 648 174 0 0 chr12 112323546 112323667 -8933863 + (TG)n Simple_repeat Simple_repeat 2 122 0 9 1441 22 0 0 0 chr12 112323667 112323689 -8933841 + AT_rich Low_complexity Low_complexity 1 22 0 9 1441 243 246 122 43 chr12 112323757 112323872 -8933658 - L1MC1 LINE L1 -23 6310 6187 9 1441 254 270 59 20 chr12 112324226 112324328 -8933202 - L1M5 LINE L1 -564 5609 5504 9 1441 541 131 269 34 chr12 112325589 112325708 -8931822 + B1_Mus1 SINE Alu 1 147 -1 9 1441 482 212 106 0 chr12 112326274 112326387 -8931143 - B1_Mur1 SINE Alu -8 141 17 9 1441 311 232 40 19 chr12 112326782 112326877 -8930653 - ID4 SINE ID -55 97 3 9 1441 409 189 21 43 chr12 112328156 112328250 -8929280 + B1_Mur2 SINE Alu 57 148 -1 9 1441 486 46 0 0 chr12 112328254 112328319 -8929211 + (GGAAA)n Simple_repeat Simple_repeat 3 67 0 9 1442 903 65 51 0 chr12 112328889 112329027 -8928503 - B2_Mm2 SINE B2 -49 146 2 9 1442 441 234 250 6 chr12 112329054 112329226 -8928304 - B3 SINE B2 0 216 3 9 1442 286 207 183 0 chr12 112329231 112329313 -8928217 - PB1D9 SINE Alu -1 119 23 9 1442 3063 177 80 24 chr12 112329318 112330244 -8927286 - Lx7 LINE L1 -1269 6427 5425 9 1442 832 175 28 22 chr12 112330383 112330564 -8926966 + RMER20A LTR ERVK 139 320 -196 9 1442 413 254 82 98 chr12 112330851 112331034 -8926496 - B3A SINE B2 -16 182 3 9 1442 1735 21 0 0 chr12 112331431 112331624 -8925906 - B2_Mm1a SINE B2 0 193 1 9 1442 256 282 54 113 chr12 112331939 112332143 -8925387 - RLTR42-int LTR ERVK -4151 1371 1180 9 1442 545 158 36 40 chr12 112332253 112332381 -8925149 + PB1D9 SINE Alu 9 132 -18 9 1442 1322 286 82 33 chr12 112332436 112332949 -8924581 + L1M4c LINE L1 252 789 -5595 9 1442 1262 96 37 0 chr12 112332978 112333165 -8924365 - B2_Mm2 SINE B2 0 195 2 9 1442 1239 113 54 0 chr12 112333165 112333350 -8924180 - B2_Mm2 SINE B2 0 195 1 9 1442 253 128 42 21 chr12 112333556 112333604 -8923926 - MTE2b LTR MaLR -5 374 326 9 1442 331 280 55 23 chr12 112333667 112333795 -8923735 - RMER15 LTR ERVL -441 134 3 9 1442 302 102 0 0 chr12 112333798 112333847 -8923683 + L1M4c LINE L1 862 910 -5474 9 1442 264 245 0 0 chr12 112333850 112333903 -8923627 - tRNA-Ala-GCY_ tRNA tRNA -22 53 1 9 1442 315 167 0 0 chr12 112333856 112333904 -8923626 - ID4 SINE ID -30 53 6 9 1442 308 289 186 35 chr12 112334089 112334455 -8923075 + L1M4c LINE L1 1197 1617 -4767 9 1442 280 331 90 37 chr12 112334577 112334765 -8922765 + B3A SINE B2 1 198 0 9 1442 241 304 29 0 chr12 112334818 112334920 -8922610 + L1M4c LINE L1 1709 1813 -4571 9 1442 384 277 17 8 chr12 112335094 112335214 -8922316 + L1M4c LINE L1 2088 2208 -4176 9 1442 329 260 67 2 chr12 112335217 112335312 -8922218 + PB1D7 SINE Alu 21 126 -1 9 1442 201 154 0 0 chr12 112335926 112335965 -8921565 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1442 1029 37 77 49 chr12 112335967 112336110 -8921420 - B1_Mus2 SINE Alu 0 147 1 9 1442 887 236 28 6 chr12 112336116 112336295 -8921235 - B3 SINE B2 -7 209 27 9 1442 198 0 0 0 chr12 112336295 112336317 -8921213 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1442 1202 68 0 0 chr12 112336317 112336463 -8921067 - B1_Mus2 SINE Alu 0 147 2 9 1442 229 77 77 0 chr12 112336464 112336503 -8921027 - B3 SINE B2 -174 42 1 9 1442 1224 54 0 7 chr12 112336577 112336726 -8920804 + B1_Mus1 SINE Alu 1 148 0 9 1442 988 161 0 0 chr12 112336929 112337078 -8920452 - B1_Mur3 SINE Alu 0 149 1 9 1442 334 254 40 88 chr12 112337176 112337301 -8920229 + B3A SINE B2 1 119 -79 9 1442 322 333 59 47 chr12 112337301 112337346 -8920184 + B4 SINE B4 1 172 -120 9 1442 541 171 11 0 chr12 112337384 112337472 -8920058 + B1_Mus1 SINE Alu 35 123 -25 9 1442 291 295 46 28 chr12 112337472 112337492 -8920038 + ID_B1 SINE B4 115 224 0 9 1442 22 56 0 0 chr12 112337741 112337777 -8919753 + AT_rich Low_complexity Low_complexity 1 36 0 9 1442 1216 91 102 0 chr12 112337786 112337944 -8919586 + B2_Mm2 SINE B2 1 159 -36 9 1442 222 62 0 0 chr12 112337944 112337976 -8919554 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 9 1442 1216 91 102 0 chr12 112337976 112337993 -8919537 + B2_Mm2 SINE B2 160 193 -2 9 1442 384 119 0 0 chr12 112338291 112338350 -8919180 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1442 354 45 0 0 chr12 112338362 112338406 -8919124 + (GA)n Simple_repeat Simple_repeat 2 45 0 9 1442 315 279 0 0 chr12 112338536 112338604 -8918926 - MTE2b LTR MaLR -283 96 29 9 1442 230 259 26 143 chr12 112338599 112338788 -8918742 + RMER17D LTR ERVK 384 550 -339 9 1442 702 167 0 55 chr12 112339022 112339149 -8918381 - B1_Mur2 SINE Alu -16 133 14 9 1442 270 210 51 152 chr12 112339051 112339169 -8918361 - MT2B LTR ERVL -344 257 152 9 1442 770 155 20 34 chr12 112339540 112339687 -8917843 + URR1A DNA MER1_type 82 226 0 9 1442 279 261 36 137 chr12 112340658 112340743 -8916787 + YREP_Mm Unknown Unknown 119 273 -1539 9 1442 549 299 0 8 chr12 112340743 112340871 -8916659 - ID_B1 SINE B4 -17 207 81 9 1442 279 261 36 137 chr12 112340871 112340907 -8916623 + YREP_Mm Unknown Unknown 274 342 -1470 9 1442 227 148 60 24 chr12 112340981 112341064 -8916466 + (TTATA)n Simple_repeat Simple_repeat 5 90 0 9 1442 1164 82 0 0 chr12 112341074 112341221 -8916309 + B1_Mus2 SINE Alu 1 147 0 9 1442 754 164 16 0 chr12 112341343 112341465 -8916065 - B3 SINE B2 -86 130 7 9 1442 303 308 9 36 chr12 112342069 112342180 -8915350 - RSINE1 SINE B4 -10 155 48 9 1442 279 305 12 0 chr12 112342396 112342478 -8915052 + ID4 SINE ID 1 83 0 9 1442 249 284 95 0 chr12 112342881 112342976 -8914554 - MER20 DNA MER1_type -89 130 27 9 1442 408 279 17 90 chr12 112343827 112344004 -8913526 - L1M5 LINE L1 -1462 4684 4521 9 1442 556 128 202 17 chr12 112344018 112344137 -8913393 - B1_Mur3 SINE Alu 0 149 9 9 1442 1239 80 36 31 chr12 112344154 112344348 -8913182 - B2_Mm2 SINE B2 0 195 1 9 1442 274 143 22 26 chr12 112345760 112345828 -8911702 - PB1D7 SINE Alu -4 145 67 9 1442 214 213 0 96 chr12 112345829 112345881 -8911649 + PB1D7 SINE Alu 65 111 -9 9 1442 663 250 7 0 chr12 112345950 112346098 -8911432 + B1_Mur1 SINE Alu 1 149 0 9 1442 200 35 35 0 chr12 112346103 112346132 -8911398 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 9 1442 924 173 0 0 chr12 112346252 112346402 -8911128 + B1_Mur4 SINE Alu 1 150 0 9 1442 312 269 60 15 chr12 112347285 112347390 -8910140 - PB1D9 SINE Alu -29 119 21 9 1442 630 217 171 24 chr12 112347752 112347922 -8909608 + B3 SINE B2 20 215 -1 9 1442 26 74 0 0 chr12 112347922 112347976 -8909554 + AT_rich Low_complexity Low_complexity 1 54 0 9 1442 920 106 0 8 chr12 112348757 112348890 -8908640 - B2_Mm2 SINE B2 0 195 64 9 1442 315 298 20 50 chr12 112349079 112349178 -8908352 - RSINE1 SINE B4 -68 97 2 9 1442 182 279 16 47 chr12 112349884 112349948 -8907582 - MIRb SINE MIR -91 177 116 9 1442 1147 91 0 0 chr12 112355737 112355880 -8901650 - B1_Mus2 SINE Alu -3 144 2 9 1442 4211 161 69 72 chr12 112355881 112356770 -8900760 - RMER19B LTR ERVK -15 887 2 9 1442 180 0 0 0 chr12 112357056 112357076 -8900454 + (CGTG)n Simple_repeat Simple_repeat 4 23 0 9 1442 180 304 0 82 chr12 112357929 112357990 -8899540 + L3 LINE CR1 758 813 -3676 9 1442 345 321 101 36 chr12 112359554 112359693 -8897837 - RSINE1 SINE B4 -15 150 3 9 1442 272 271 115 0 chr12 112360046 112360142 -8897388 + L1M4c LINE L1 172 278 -6106 9 1442 404 37 19 0 chr12 112360164 112360218 -8897312 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1442 424 248 19 67 chr12 112360288 112360392 -8897138 + PB1D7 SINE Alu 18 116 -4 9 1442 449 200 364 26 chr12 112360392 112360546 -8896984 + B3 SINE B2 1 206 -10 9 1442 605 297 26 0 chr12 112360605 112360760 -8896770 + B3A SINE B2 2 160 -38 9 1442 259 293 13 0 chr12 112360773 112360848 -8896682 + B3A SINE B2 121 196 -2 9 1442 401 165 79 99 chr12 112360874 112360975 -8896555 + PB1D9 SINE Alu 9 107 -13 9 1442 599 218 48 0 chr12 112361099 112361223 -8896307 + B3 SINE B2 87 216 0 1 1442 303 272 9 104 chr12 112361456 112361571 -8895959 - ID_B1 SINE B4 -11 213 110 1 1442 330 322 11 0 chr12 112361547 112361634 -8895896 - RSINE1 SINE B4 -75 90 3 1 1442 769 301 48 0 chr12 112361683 112361889 -8895641 + ID_B1 SINE B4 2 217 -7 1 1442 418 280 93 0 chr12 112362306 112362424 -8895106 + B1F1 SINE Alu 3 131 -18 1 1442 251 279 0 16 chr12 112362454 112362516 -8895014 + ID4_ SINE ID 23 83 0 1 1442 505 271 16 16 chr12 112362601 112362725 -8894805 - B1F SINE Alu -3 146 23 1 1442 489 254 32 24 chr12 112362761 112362886 -8894644 - B1F SINE Alu 0 149 24 1 1442 467 324 7 33 chr12 112362886 112362911 -8894619 - ID_B1 SINE B4 0 224 79 1 1442 565 239 71 41 chr12 112362979 112363149 -8894381 + MTEb LTR MaLR 2 176 -203 1 1442 907 236 60 15 chr12 112363155 112363422 -8894108 + B4A SINE B4 1 279 -13 1 1442 534 252 34 45 chr12 112363425 112363640 -8893890 + MTEb LTR MaLR 142 353 -26 1 1442 685 220 17 15 chr12 112363632 112363818 -8893712 - B3 SINE B2 -7 188 2 1 1442 245 349 73 0 chr12 112363818 112363874 -8893656 + MTEa LTR MaLR 316 379 0 1 1442 438 282 177 9 chr12 112363875 112364132 -8893398 + L1M2 LINE L1 2408 2706 -3434 1 1442 336 274 196 0 chr12 112364142 112364310 -8893220 + L1M2 LINE L1 4811 5011 -1132 1 1442 263 304 59 53 chr12 112364558 112364728 -8892802 - B2_Mm2 SINE B2 -23 172 2 1 1442 649 226 0 0 chr12 112364606 112364730 -8892800 - RSINE1 SINE B4 -41 124 1 1 1442 437 296 53 0 chr12 112364730 112364862 -8892668 - ID_B1 SINE B4 -4 220 82 1 1442 357 291 60 20 chr12 112364863 112365051 -8892479 - L1MEf LINE L1 -3819 2327 2122 1 1442 656 141 28 3 chr12 112365060 112365166 -8892364 - B1_Mus2 SINE Alu 0 147 45 1 1442 474 232 53 46 chr12 112365181 112365192 -8892338 - B3 SINE B2 -37 179 170 1 1442 429 54 0 0 chr12 112365192 112365248 -8892282 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1442 486 232 53 46 chr12 112365248 112365367 -8892163 - B3A SINE B2 -47 169 48 1 1442 436 279 85 0 chr12 112365434 112365563 -8891967 + ID_B1 SINE B4 82 221 -3 1 1442 369 0 0 0 chr12 112365899 112365940 -8891590 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1442 1345 72 22 11 chr12 112366001 112366183 -8891347 + B2_Mm2 SINE B2 1 184 -11 1 1442 288 268 0 53 chr12 112366190 112366265 -8891265 + PB1D7 SINE Alu 33 103 -17 1 1442 564 250 62 0 chr12 112366317 112366461 -8891069 + B3 SINE B2 2 154 -62 1 1442 875 144 0 14 chr12 112366520 112366661 -8890869 + RSINE1 SINE B4 3 141 -24 1 1442 255 252 18 6 chr12 112366904 112366983 -8890547 + ID2 SINE ID 2 84 -68 1 1442 434 297 17 0 chr12 112367145 112367263 -8890267 + B2_Mm2 SINE B2 1 120 -75 1 1442 952 83 98 8 chr12 112367516 112367649 -8889881 + B1_Mus2 SINE Alu 3 147 0 1 1442 315 278 132 51 chr12 112367671 112367868 -8889662 - L1MB5 LINE L1 -24 6150 5938 1 1442 405 39 0 0 chr12 112367983 112368034 -8889496 + (A)n Simple_repeat Simple_repeat 1 51 0 1 1442 225 178 0 0 chr12 112368054 112368099 -8889431 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1442 1561 216 51 22 chr12 112368450 112368805 -8888725 + ORR1D1 LTR MaLR 10 374 0 1 1442 453 305 68 56 chr12 112369063 112369093 -8888437 + ORR1D1-int LTR MaLR 8 40 -1330 1 1442 342 0 0 0 chr12 112369093 112369131 -8888399 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1442 789 264 55 31 chr12 112369131 112369350 -8888180 + ORR1D1-int LTR MaLR 41 288 -1292 1 1442 2126 122 8 43 chr12 112369470 112369822 -8887708 + Lx4B LINE L1 6715 7054 -4 1 1442 306 347 41 0 chr12 112369851 112369972 -8887558 - MLT1L LTR MaLR -307 303 178 1 1442 609 221 0 30 chr12 112370018 112370153 -8887377 + MT2A LTR ERVL 2 132 -401 1 1442 2728 145 13 21 chr12 112370227 112370693 -8886837 + RMER4B LTR ERVK 124 585 0 1 1442 539 286 154 22 chr12 112370699 112370971 -8886559 + MT2A LTR ERVL 277 584 0 1 1442 202 331 86 50 chr12 112371086 112371114 -8886416 + L2a LINE L2 3282 3309 -117 1 1442 1615 130 62 241 chr12 112371114 112371198 -8886332 - ORR1C2 LTR MaLR 0 384 315 1 1442 854 182 0 69 chr12 112371198 112371357 -8886173 - B1_Mur4 SINE Alu -1 149 2 1 1442 1615 130 62 241 chr12 112371357 112371740 -8885790 - ORR1C2 LTR MaLR -70 314 1 1 1442 202 331 86 50 chr12 112371740 112371851 -8885679 + L2a LINE L2 3310 3426 0 1 1442 577 241 107 60 chr12 112373709 112373961 -8883569 + L1MB3 LINE L1 5593 5856 -327 1 1442 758 181 87 0 chr12 112373992 112374130 -8883400 + B1_Mur4 SINE Alu 1 150 0 1 1442 302 314 41 33 chr12 112374141 112374263 -8883267 + L1M4c LINE L1 1275 1397 -4987 1 1442 484 184 38 47 chr12 112374580 112374707 -8882823 + PB1D7 SINE Alu 2 122 -5 1 1442 857 184 109 22 chr12 112374707 112374890 -8882640 + B3 SINE B2 5 203 -13 1 1442 377 259 30 114 chr12 112374890 112374923 -8882607 + B1_Mur4 SINE Alu 118 148 -2 1 1442 212 247 27 0 chr12 112374961 112375034 -8882496 + GA-rich Low_complexity Low_complexity 4 78 0 1 1442 245 297 0 0 chr12 112375504 112375568 -8881962 - LTR41 LTR ERVL -615 153 90 1 1442 540 222 13 100 chr12 112375686 112375836 -8881694 - B1_Mur1 SINE Alu 0 149 13 1 1442 267 264 62 104 chr12 112375848 112375880 -8881650 - B1_Mur2 SINE Alu -11 138 105 1 1442 1147 71 0 0 chr12 112375880 112376020 -8881510 + B1_Mus1 SINE Alu 3 142 -6 1 1442 267 264 62 104 chr12 112376020 112376131 -8881399 - B1_Mur2 SINE Alu -45 104 1 1 1442 461 219 0 79 chr12 112376021 112376135 -8881395 - ID_B1 SINE B4 -42 182 78 1 1442 401 36 18 0 chr12 112376171 112376226 -8881304 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 1 1442 2109 159 22 99 chr12 112376246 112376379 -8881151 + MTD LTR MaLR 1 110 -309 1 1442 1200 199 0 23 chr12 112376379 112376600 -8880930 - B3 SINE B2 0 216 1 1 1442 2109 159 22 99 chr12 112376600 112376624 -8880906 + MTD LTR MaLR 111 120 -299 1 1442 1453 55 16 0 chr12 112376624 112376806 -8880724 - B2_Mm1a SINE B2 -7 186 2 1 1442 2109 159 22 99 chr12 112376806 112377101 -8880429 + MTD LTR MaLR 121 419 0 1 1442 512 208 106 62 chr12 112377101 112377213 -8880317 - RSINE1 SINE B4 -47 118 2 1 1442 304 291 0 12 chr12 112377222 112377302 -8880228 - ID4 SINE ID -2 81 3 1 1442 309 51 0 0 chr12 112377314 112377353 -8880177 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1442 21 0 0 0 chr12 112377365 112377386 -8880144 + AT_rich Low_complexity Low_complexity 1 21 0 1 1442 983 71 0 0 chr12 112377419 112377545 -8879985 + B1_Mm SINE Alu 1 126 -21 1 1442 2109 133 46 6 chr12 112377542 112377890 -8879640 + ORR1D1 LTR MaLR 13 374 0 1 1442 437 300 65 20 chr12 112377893 112378046 -8879484 - B3A SINE B2 -30 168 9 1 1442 581 226 78 28 chr12 112378086 112378227 -8879303 + B1F SINE Alu 1 148 -1 1 1442 316 289 50 20 chr12 112378588 112378687 -8878843 + PB1D10 SINE Alu 16 117 0 1 1442 325 369 6 11 chr12 112379055 112379300 -8878230 + (CA)n Simple_repeat Simple_repeat 1 243 0 1 1442 450 351 6 0 chr12 112379356 112379530 -8878000 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1442 1206 73 27 32 chr12 112379578 112379763 -8877767 - B2_Mm2 SINE B2 -9 186 3 1 1442 418 182 125 0 chr12 112379824 112379912 -8877618 - B3 SINE B2 -116 100 2 1 1442 22 0 0 0 chr12 112379915 112379937 -8877593 + AT_rich Low_complexity Low_complexity 1 22 0 1 1442 1465 222 186 98 chr12 112379953 112380443 -8877087 + MT2A LTR ERVL 1 533 0 1 1442 303 261 16 0 chr12 112380451 112380528 -8877002 + ID4_ SINE ID 21 98 -54 1 1442 1320 57 97 0 chr12 112380537 112380694 -8876836 + B2_Mm1a SINE B2 1 158 -35 1 1442 198 0 0 0 chr12 112380694 112380716 -8876814 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 1442 1320 57 97 0 chr12 112380716 112380734 -8876796 + B2_Mm1a SINE B2 159 191 -2 1 1442 1521 32 15 64 chr12 112380749 112380951 -8876579 + B2_Mm1a SINE B2 2 193 0 1 1442 711 264 91 38 chr12 112381014 112381223 -8876307 - ID_B1 SINE B4 -3 221 2 1 1442 301 337 63 17 chr12 112381238 112381540 -8875990 + L1M4 LINE L1 2266 2581 -3565 1 1442 1201 62 0 0 chr12 112382650 112382787 -8874743 + B1_Mus2 SINE Alu 2 138 -9 1 1442 531 0 0 0 chr12 112382787 112382846 -8874684 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 1 1442 338 178 231 11 chr12 112384802 112384893 -8872637 + PB1D10 SINE Alu 7 117 0 1 1442 422 189 0 21 chr12 112384945 112385042 -8872488 + GA-rich Low_complexity Low_complexity 4 98 0 1 1442 204 158 0 0 chr12 112385674 112385712 -8871818 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1442 214 339 113 48 chr12 112385712 112385836 -8871694 + MIR SINE MIR 61 192 -70 1 1442 426 88 0 0 chr12 112386098 112386166 -8871364 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1442 337 162 79 26 chr12 112386216 112386292 -8871238 + RLTR25B LTR ERVK 430 509 -519 1 1442 857 29 0 0 chr12 112386230 112386335 -8871195 + B1_Mus2 SINE Alu 43 147 0 1 1442 357 289 0 0 chr12 112386587 112386729 -8870801 + (CA)n Simple_repeat Simple_repeat 2 143 0 1 1442 851 265 97 0 chr12 112386782 112386978 -8870552 + ID_B1 SINE B4 2 216 -8 1 1442 1181 181 13 39 chr12 112387327 112387557 -8869973 - URR1A DNA MER1_type -2 224 1 1 1442 702 221 7 20 chr12 112388927 112389075 -8868455 - B1_Mus2 SINE Alu -1 146 1 1 1442 212 125 20 59 chr12 112389149 112389200 -8868330 + T-rich Low_complexity Low_complexity 2 50 0 1 1442 1179 81 0 0 chr12 112389204 112389352 -8868178 - B1_Mus1 SINE Alu 0 148 1 1 1442 473 304 85 102 chr12 112389963 112389999 -8867531 + MTEa LTR MaLR 27 62 -317 1 1442 441 0 0 0 chr12 112389999 112390048 -8867482 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1442 473 304 85 102 chr12 112390048 112390304 -8867226 + MTEa LTR MaLR 63 313 -66 1 1442 351 295 0 0 chr12 112390597 112390675 -8866855 - ID4 SINE ID -4 79 2 1 1442 513 226 0 28 chr12 112390684 112390793 -8866737 - PB1D10 SINE Alu -11 106 1 1 1442 230 229 32 16 chr12 112390937 112390999 -8866531 - MLT1L LTR MaLR -356 254 192 1 1442 377 319 7 7 chr12 112391702 112391841 -8865689 - L1M4 LINE L1 -413 5761 5623 1 1442 423 0 0 0 chr12 112392765 112392812 -8864718 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1442 364 286 90 13 chr12 112393059 112393215 -8864315 - MT2A LTR ERVL 0 533 366 1 1442 426 314 35 35 chr12 112393270 112393412 -8864118 - MTEa LTR MaLR -219 160 19 1 1442 956 160 51 6 chr12 112393575 112393751 -8863779 + B3 SINE B2 5 188 -28 1 1442 921 145 0 0 chr12 112393775 112394020 -8863510 + (TG)n Simple_repeat Simple_repeat 1 245 0 1 1442 951 208 49 5 chr12 112394401 112394604 -8862926 - B3 SINE B2 -3 213 2 1 1442 1453 222 95 48 chr12 112395166 112395540 -8861990 - Lx7 LINE L1 -427 7269 6871 1 1442 1424 75 0 16 chr12 112395540 112395729 -8861801 - B2_Mm2 SINE B2 -8 187 2 1 1442 1453 222 95 48 chr12 112395729 112395808 -8861722 - Lx7 LINE L1 -826 6870 6795 1 1442 942 276 29 36 chr12 112396628 112396902 -8860628 - B4A SINE B4 -12 280 9 1 1442 279 0 0 0 chr12 112396931 112396962 -8860568 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1442 949 148 0 20 chr12 112397193 112397345 -8860185 - B1_Mur4 SINE Alu 0 150 2 1 1442 506 241 30 138 chr12 112397345 112397472 -8860058 - MT2B LTR ERVL -448 153 52 1 1442 1305 95 6 3 chr12 112397533 112397882 -8859648 + (TCC)n Simple_repeat Simple_repeat 1 349 0 1 1442 205 321 37 0 chr12 112398323 112398404 -8859126 - MIRm SINE MIR -105 171 88 1 1442 703 252 122 37 chr12 112398461 112398807 -8858723 - MTD LTR MaLR -2 417 11 1 1442 315 0 0 0 chr12 112398807 112398842 -8858688 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1442 728 148 52 0 chr12 112398844 112398959 -8858571 - B1_Mus2 SINE Alu -14 133 13 1 1442 248 227 147 0 chr12 112399037 112399112 -8858418 + ID_B1 SINE B4 81 166 -58 1 1442 303 320 13 0 chr12 112399295 112399373 -8858157 + RSINE1 SINE B4 78 156 -9 1 1442 213 216 38 38 chr12 112399690 112399743 -8857787 + ID2 SINE ID 31 83 0 1 1442 182 204 278 62 chr12 112400151 112400313 -8857217 + L2a LINE L2 2854 3050 -369 1 1442 202 264 38 0 chr12 112400462 112400515 -8857015 + L2a LINE L2 3278 3332 -94 1 1442 192 77 0 0 chr12 112401310 112401336 -8856194 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1442 212 31 62 0 chr12 112401674 112401706 -8855824 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1442 521 318 8 0 chr12 112401715 112401841 -8855689 + RSINE1 SINE B4 11 137 -28 1 1442 336 24 0 0 chr12 112401927 112401968 -8855562 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1442 310 306 71 0 chr12 112401993 112402091 -8855439 + PB1D10 SINE Alu 5 109 -8 1 1442 618 291 53 0 chr12 112402105 112402256 -8855274 + RSINE1 SINE B4 3 161 -4 1 1442 306 0 0 0 chr12 112402260 112402294 -8855236 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1442 33 80 0 0 chr12 112404348 112404423 -8853107 + GC_rich Low_complexity Low_complexity 1 75 0 1 1442 240 246 0 67 chr12 112404430 112404565 -8852965 + G-rich Low_complexity Low_complexity 4 129 0 1 1442 25 0 0 0 chr12 112404617 112404642 -8852888 + GC_rich Low_complexity Low_complexity 1 25 0 1 1442 30 0 0 0 chr12 112404679 112404709 -8852821 + GC_rich Low_complexity Low_complexity 1 30 0 1 1442 50 42 0 0 chr12 112404820 112404891 -8852639 + GC_rich Low_complexity Low_complexity 1 71 0 1 1442 226 256 179 0 chr12 112406748 112406826 -8850704 + RMER2 LTR ERV1 445 536 -31 1 1442 915 66 22 0 chr12 112407046 112407182 -8850348 + (TA)n Simple_repeat Simple_repeat 2 140 0 1 1442 189 0 0 0 chr12 112408085 112408106 -8849424 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1442 947 176 145 0 chr12 112408488 112408681 -8848849 - URR1A DNA MER1_type -3 223 3 1 1442 28 0 0 0 chr12 112408824 112408852 -8848678 + AT_rich Low_complexity Low_complexity 1 28 0 1 1442 349 245 60 101 chr12 112408864 112409032 -8848498 - RSINE1 SINE B4 -3 162 2 1 1442 431 220 173 9 chr12 112409107 112409217 -8848313 + RSINE1 SINE B4 2 129 -36 1 1442 1366 55 44 11 chr12 112409303 112409485 -8848045 - B2_Mm2 SINE B2 -6 189 2 1 1442 859 84 45 89 chr12 112409691 112409848 -8847682 - B1_Mur4 SINE Alu 0 150 1 1 1442 197 239 0 21 chr12 112409960 112410007 -8847523 + L2b LINE L2 3313 3358 -17 1 1442 559 175 142 55 chr12 112410190 112410317 -8847213 - B1_Mur2 SINE Alu -2 147 10 1 1442 351 184 48 169 chr12 112410220 112410344 -8847186 - MT2B2 LTR ERVL -332 252 144 1 1442 243 236 0 0 chr12 112410823 112410895 -8846635 + CT-rich Low_complexity Low_complexity 3 74 0 1 1442 440 301 34 27 chr12 112411274 112411421 -8846109 - B1F SINE Alu -1 148 1 1 1442 439 323 17 47 chr12 112411421 112411446 -8846084 - ID_B1 SINE B4 -2 222 56 1 1442 296 194 139 0 chr12 112411649 112411721 -8845809 + ID4 SINE ID 2 83 0 1 1442 931 122 0 51 chr12 112412392 112412548 -8844982 - B1_Mus1 SINE Alu 0 148 1 1 1442 954 236 65 5 chr12 112412636 112412836 -8844694 + B3 SINE B2 1 212 -4 1 1442 336 242 15 68 chr12 112412945 112413078 -8844452 + L1MB4 LINE L1 6055 6180 0 1 1442 360 286 59 15 chr12 112413126 112413261 -8844269 + B3A SINE B2 57 197 -1 1 1442 431 229 41 41 chr12 112413325 112413448 -8844082 + ID_B1 SINE B4 101 223 -1 1 1442 420 206 83 56 chr12 112413619 112413727 -8843803 - PB1D10 SINE Alu -6 111 1 1 1442 1218 54 0 0 chr12 112414041 112414188 -8843342 + B1_Mus1 SINE Alu 2 148 0 1 1442 1428 78 10 5 chr12 112414271 112414464 -8843066 + B2_Mm2 SINE B2 2 195 0 1 1442 422 294 119 78 chr12 112414621 112414980 -8842550 - L1MB5 LINE L1 -149 6025 5644 1 1442 2273 259 66 25 chr12 112415080 112416014 -8841516 - L1MB5 LINE L1 -699 5465 4497 1 1442 348 270 62 22 chr12 112416733 112416960 -8840570 - L1MB5 LINE L1 -1652 4488 4253 1 1442 795 137 69 0 chr12 112416977 112417108 -8840422 - B1_Mur3 SINE Alu -1 148 9 1 1442 728 209 156 6 chr12 112417112 112417285 -8840245 - B3 SINE B2 -16 200 2 1 1442 228 192 38 19 chr12 112417451 112417504 -8840026 - L1MB5 LINE L1 -2050 4096 4043 1 1442 236 232 36 101 chr12 112417576 112417633 -8839897 - L1MB5 LINE L1 -2136 4010 3960 1 1442 719 185 94 22 chr12 112417633 112417771 -8839759 - B1_Mur3 SINE Alu 0 149 2 1 1442 236 232 36 101 chr12 112417771 112417881 -8839649 - L1MB5 LINE L1 -2187 3959 3854 1 1442 312 27 0 0 chr12 112417908 112417945 -8839585 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1442 322 217 0 16 chr12 112417946 112418007 -8839523 - B4A SINE B4 -231 61 2 1 1442 426 306 86 6 chr12 112418017 112418191 -8839339 - L1MB5 LINE L1 -2308 3832 3645 1 1442 366 90 330 68 chr12 112418338 112418456 -8839074 - B2_Mm2 SINE B2 0 195 47 1 1442 1245 101 6 0 chr12 112418507 112418676 -8838854 - B2_Mm1t SINE B2 -22 171 2 1 1442 311 377 33 0 chr12 112418833 112418955 -8838575 - MLT1H1 LTR MaLR -120 435 310 1 1442 250 326 21 10 chr12 112419318 112419414 -8838116 - PB1D10 SINE Alu -5 112 16 1 1442 838 186 7 7 chr12 112419586 112419732 -8837798 - B1_Mus2 SINE Alu -1 146 1 1 1442 1012 146 211 0 chr12 112419779 112419950 -8837580 + B3 SINE B2 1 207 -9 1 1442 362 211 67 92 chr12 112421177 112421297 -8836233 - ID_B1 SINE B4 0 224 108 1 1442 750 163 26 66 chr12 112421317 112421468 -8836062 - B1_Mur1 SINE Alu 0 149 5 1 1442 479 222 129 52 chr12 112421648 112421882 -8835648 - MTEb LTR MaLR -13 366 51 1 1442 3386 283 397 16 chr12 112421884 112422087 -8835443 + MTE-int LTR MaLR 94 373 -1207 1 1442 393 22 0 0 chr12 112422087 112422133 -8835397 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1 1442 649 184 80 0 chr12 112422133 112422258 -8835272 - B1_Mur2 SINE Alu -12 137 3 1 1442 3386 270 81 49 chr12 112422258 112423319 -8834211 + MTE-int LTR MaLR 374 1470 -110 1 1442 204 97 0 0 chr12 112423342 112423373 -8834157 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 1442 705 106 97 0 chr12 112423373 112423486 -8834044 - B1_Mm SINE Alu 0 147 24 1 1442 207 0 0 0 chr12 112423495 112423518 -8834012 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1442 213 295 135 83 chr12 112423790 112423825 -8833705 - ID_B1 SINE B4 -118 106 6 1 1442 243 262 180 0 chr12 112423825 112423886 -8833644 - ID4_ SINE ID -6 77 6 1 1442 1664 156 128 17 chr12 112423996 112424401 -8833129 + Lx3C LINE L1 6525 6974 -2 1 1442 1124 181 57 5 chr12 112424764 112425044 -8832486 + MTD LTR MaLR 5 394 -25 1 1442 399 186 90 34 chr12 112425216 112425305 -8832225 - PB1D7 SINE Alu -7 113 20 1 1442 184 311 99 109 chr12 112425518 112425585 -8831945 + MIRb SINE MIR 130 205 -63 1 1442 436 250 113 8 chr12 112425585 112425718 -8831812 + B1F SINE Alu 1 147 -2 1 1442 184 311 99 109 chr12 112425718 112425751 -8831779 + MIRb SINE MIR 206 229 -39 1 1442 402 295 122 66 chr12 112425937 112426133 -8831397 - ID_B1 SINE B4 -16 208 2 1 1442 254 211 99 0 chr12 112427503 112427567 -8829963 - B1_Mur1 SINE Alu -24 125 50 1 1442 1029 232 18 5 chr12 112427639 112427860 -8829670 + ID_B1 SINE B4 1 224 0 1 1442 706 155 0 41 chr12 112428006 112428127 -8829403 - PB1D9 SINE Alu -3 117 2 1 1442 239 293 95 79 chr12 112428326 112428452 -8829078 + B3 SINE B2 89 216 0 1 1442 809 241 37 56 chr12 112428928 112429143 -8828387 - B3 SINE B2 -5 211 1 1 1442 621 250 58 71 chr12 112430345 112430495 -8827035 - ID_B1 SINE B4 0 224 78 1 1442 189 0 0 0 chr12 112430495 112430516 -8827014 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 1442 621 250 58 71 chr12 112430516 112430589 -8826941 - ID SINE ID -147 77 4 1 1442 658 303 11 33 chr12 112430697 112430881 -8826649 - B3 SINE B2 -12 204 25 1 1442 791 265 94 0 chr12 112430908 112431153 -8826377 - Lx9 LINE L1 -78 7566 7299 1 1442 242 281 11 0 chr12 112431187 112431276 -8826254 - L1M5 LINE L1 -331 5793 5704 1 1442 191 338 83 15 chr12 112431611 112431743 -8825787 - L2a LINE L2 -273 3153 3013 1 1442 228 176 0 0 chr12 112432613 112432649 -8824881 + T-rich Low_complexity Low_complexity 16 51 0 1 1442 1258 41 0 0 chr12 112432649 112432796 -8824734 - B1_Mm SINE Alu 0 147 1 1 1442 228 176 0 0 chr12 112432796 112432810 -8824720 + T-rich Low_complexity Low_complexity 2 15 0 1 1442 315 321 0 187 chr12 112432852 112432905 -8824625 + PB1D10 SINE Alu 1 53 -64 1 1442 1470 68 16 10 chr12 112432905 112433099 -8824431 + B2_Mm2 SINE B2 1 195 0 1 1442 315 321 0 187 chr12 112433099 112433179 -8824351 + PB1D10 SINE Alu 54 109 -8 1 1442 853 194 22 0 chr12 112433202 112433341 -8824189 + B1_Mus1 SINE Alu 1 142 -6 1 1442 658 62 21 0 chr12 112433343 112433439 -8824091 + (GA)n Simple_repeat Simple_repeat 2 99 0 1 1442 270 247 75 11 chr12 112433521 112433615 -8823915 - PB1D10 SINE Alu -1 116 17 1 1442 225 154 0 0 chr12 112433971 112434010 -8823520 + GA-rich Low_complexity Low_complexity 3 41 0 1 1442 312 268 85 0 chr12 112434142 112434224 -8823306 + PB1D10 SINE Alu 17 105 -12 1 1442 421 206 224 0 chr12 112434911 112435018 -8822512 + ID_B1 SINE B4 86 216 -8 1 1442 499 259 0 0 chr12 112435431 112435539 -8821991 + PB1D10 SINE Alu 3 110 -7 1 1442 214 191 0 0 chr12 112435747 112435789 -8821741 + T-rich Low_complexity Low_complexity 1 42 0 1 1442 186 43 0 0 chr12 112435938 112435961 -8821569 + (ATG)n Simple_repeat Simple_repeat 3 25 0 1 1442 1190 86 91 0 chr12 112436053 112436209 -8821321 + B2_Mm1a SINE B2 3 160 -33 1 1442 315 0 0 0 chr12 112436209 112436244 -8821286 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1442 1190 86 91 0 chr12 112436244 112436262 -8821268 + B2_Mm1a SINE B2 161 191 -2 1 1442 25 0 0 0 chr12 112436329 112436354 -8821176 + AT_rich Low_complexity Low_complexity 1 25 0 1 1442 631 188 265 0 chr12 112436373 112436543 -8820987 - B3 SINE B2 0 216 2 1 1442 1096 120 11 74 chr12 112436574 112436763 -8820767 - B2_Mm2 SINE B2 -18 177 1 1 1442 211 238 37 12 chr12 112436863 112436944 -8820586 + CT-rich Low_complexity Low_complexity 4 86 0 1 1442 939 137 14 7 chr12 112436946 112437093 -8820437 - B1_Mur4 SINE Alu 0 150 3 1 1442 278 268 18 126 chr12 112437173 112437284 -8820246 - B3 SINE B2 -117 99 1 1 1442 691 152 136 0 chr12 112438734 112438859 -8818671 + B1_Mur4 SINE Alu 3 144 -6 1 1442 1240 54 0 0 chr12 112438875 112439022 -8818508 + B1_Mus1 SINE Alu 1 147 -1 1 1442 267 167 0 0 chr12 112439024 112439090 -8818440 + A-rich Low_complexity Low_complexity 1 66 0 1 1442 294 293 50 20 chr12 112439220 112439321 -8818209 + MIR SINE MIR 90 193 -69 1 1442 2288 121 8 53 chr12 112439904 112440231 -8817299 + ORR1B2 LTR MaLR 1 313 -54 1 1442 1260 64 93 0 chr12 112440231 112440403 -8817127 + B2_Mm2 SINE B2 2 189 -6 1 1442 2288 121 8 53 chr12 112440403 112440452 -8817078 + ORR1B2 LTR MaLR 314 360 -7 1 1442 255 130 0 0 chr12 112441267 112441321 -8816209 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1442 603 209 68 48 chr12 112442908 112443054 -8814476 + B1_Mur1 SINE Alu 1 149 0 1 1442 326 236 20 6 chr12 112443110 112443200 -8814330 - B1_Mm SINE Alu -8 139 18 1 1442 332 323 39 2 chr12 112443280 112443426 -8814104 - MIRm SINE MIR -33 175 18 1 1442 404 256 0 23 chr12 112443701 112443789 -8813741 + B4A SINE B4 1 86 -206 1 1442 933 174 56 97 chr12 112444114 112444330 -8813200 + B3 SINE B2 2 208 -8 1 1442 26 50 0 0 chr12 112444335 112444375 -8813155 + AT_rich Low_complexity Low_complexity 1 40 0 1 1442 1469 64 16 11 chr12 112444416 112444606 -8812924 - B2_Mm2 SINE B2 -4 191 1 1 1442 230 125 0 20 chr12 112444621 112444670 -8812860 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 1 1442 597 166 63 120 chr12 112444672 112444830 -8812700 - B1_Mur2 SINE Alu 0 149 1 1 1442 195 42 0 0 chr12 112444844 112444868 -8812662 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1442 630 280 94 11 chr12 112444870 112445061 -8812469 - B3 SINE B2 -7 209 3 1 1442 859 215 0 0 chr12 112445905 112446054 -8811476 + B1_Mur1 SINE Alu 1 149 0 1 1442 469 192 87 0 chr12 112446076 112446180 -8811350 + B1_Mus2 SINE Alu 34 146 -1 1 1442 1205 35 7 0 chr12 112446300 112446442 -8811088 + B1_Mus1 SINE Alu 1 143 -5 1 1442 529 299 57 25 chr12 112446620 112446778 -8810752 + RSINE1 SINE B4 1 163 -2 1 1442 767 151 0 23 chr12 112446834 112446963 -8810567 - B1_Mur3 SINE Alu -23 126 1 1 1442 262 276 0 0 chr12 112447043 112447101 -8810429 + B1F SINE Alu 2 59 -90 1 1442 247 152 0 42 chr12 112447209 112447257 -8810273 + B1_Mur2 SINE Alu 98 143 -6 1 1442 709 141 49 8 chr12 112447708 112447830 -8809700 - B1_Mus2 SINE Alu 0 147 21 1 1442 714 281 136 32 chr12 112448005 112448255 -8809275 - B4A SINE B4 -15 277 2 1 1442 243 0 0 0 chr12 112448345 112448372 -8809158 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1442 1592 143 94 155 chr12 112449618 112449956 -8807574 + ORR1C2 LTR MaLR 3 313 -71 1 1442 1010 141 7 0 chr12 112449956 112450105 -8807425 - B1_Mur4 SINE Alu 0 150 1 1 1442 1592 143 94 155 chr12 112450105 112450172 -8807358 + ORR1C2 LTR MaLR 314 383 -1 1 1442 271 256 114 21 chr12 112450550 112450690 -8806840 + MER96B DNA hAT 44 196 -221 1 1442 275 356 76 46 chr12 112451003 112451200 -8806330 - MER58A DNA MER1_type -15 209 7 1 1442 235 333 12 12 chr12 112451648 112451730 -8805800 + ID4_ SINE ID 2 83 0 1 1442 352 281 0 2 chr12 112451791 112451875 -8805655 + ID4_ SINE ID 1 84 -68 1 1442 455 256 107 66 chr12 112451928 112452125 -8805405 + B3 SINE B2 5 209 -7 1 1442 402 288 88 102 chr12 112452142 112452347 -8805183 + L1MEf LINE L1 1327 1528 -4714 1 1442 440 205 24 0 chr12 112452506 112452589 -8804941 + PB1D10 SINE Alu 33 117 0 1 1442 679 116 17 67 chr12 112452735 112452855 -8804675 + B2_Mm2 SINE B2 33 146 -49 1 1442 330 26 0 0 chr12 112452873 112452912 -8804618 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 1442 464 206 45 45 chr12 112453047 112453159 -8804371 - PB1D10 SINE Alu 0 117 6 1 1442 341 247 12 0 chr12 112453273 112453358 -8804172 + RSINE1 SINE B4 44 129 -36 1 1442 261 299 105 84 chr12 112453386 112453489 -8804041 + L1M4 LINE L1 3470 3578 -2568 1 1442 903 223 86 0 chr12 112453489 112453686 -8803844 + B3 SINE B2 3 216 0 1 1442 261 284 110 96 chr12 112453686 112453999 -8803531 + L1M4 LINE L1 3572 3896 -2250 1 1442 2541 92 0 0 chr12 112454155 112454482 -8803048 - ORR1A2 LTR MaLR 0 327 1 1 1442 429 255 19 10 chr12 112454485 112454588 -8802942 + ID_B1 SINE B4 121 224 0 1 1442 328 309 59 98 chr12 112454639 112454817 -8802713 + L1MEf LINE L1 2028 2205 -3961 1 1442 1126 66 0 0 chr12 112454817 112454953 -8802577 + B1_Mus2 SINE Alu 2 137 -10 1 1442 198 0 0 0 chr12 112454953 112454975 -8802555 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1442 328 309 59 98 chr12 112454975 112455100 -8802430 + L1MEf LINE L1 2206 2319 -3847 1 1442 36 0 0 0 chr12 112455264 112455300 -8802230 + AT_rich Low_complexity Low_complexity 1 36 0 1 1442 216 200 0 0 chr12 112455303 112455348 -8802182 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 1 1442 368 315 22 52 chr12 112455407 112455541 -8801989 - RSINE1 SINE B4 -1 164 35 1 1442 369 308 47 57 chr12 112455551 112455744 -8801786 - MLT1J1 LTR MaLR -245 199 9 1 1442 398 362 69 0 chr12 112455745 112455919 -8801611 + L1MEf LINE L1 2402 2587 -3559 1 1442 1258 120 16 0 chr12 112456033 112456217 -8801313 - B2_Mm2 SINE B2 -8 187 1 1 1442 238 297 25 0 chr12 112456241 112456359 -8801171 + L1MEf LINE L1 2742 2862 -3284 1 1442 281 292 47 8 chr12 112457071 112457190 -8800340 + L1MEf LINE L1 5472 5592 -587 1 1442 436 205 101 8 chr12 112457444 112457577 -8799953 + B1_Mur1 SINE Alu 3 149 0 1 1442 1351 52 46 6 chr12 112457642 112457816 -8799714 + B2_Mm2 SINE B2 1 181 -14 1 1442 373 146 20 0 chr12 112457828 112457901 -8799629 + B2_Mm2 SINE B2 46 124 -74 1 1442 23 33 0 0 chr12 112457904 112457934 -8799596 + AT_rich Low_complexity Low_complexity 1 30 0 1 1442 441 0 0 0 chr12 112458340 112458389 -8799141 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1442 506 304 54 11 chr12 112458389 112458566 -8798964 - B3A SINE B2 -12 186 2 1 1442 1271 27 0 7 chr12 112458648 112458795 -8798735 - B1_Mus1 SINE Alu -1 147 2 1 1442 1190 35 20 14 chr12 112459030 112459176 -8798354 + B1_Mus1 SINE Alu 2 148 0 1 180 312 355 22 50 chr12 112459639 112459820 -8797710 - L1MC5 LINE L1 -771 7190 7015 1 1443 3436 150 62 111 chr12 112459850 112460607 -8796923 - RMER6D LTR ERVK 0 720 1 1 1443 264 262 53 40 chr12 112460729 112460880 -8796650 - L1MC5 LINE L1 -1132 6829 6677 1 1443 189 132 0 0 chr12 112461021 112461059 -8796471 + (TTTTTA)n Simple_repeat Simple_repeat 4 41 0 1 1443 927 188 80 77 chr12 112461258 112461676 -8795854 + ORR1D1 LTR MaLR 8 374 0 1 1443 395 218 63 169 chr12 112462395 112462632 -8794898 + B3 SINE B2 4 215 -1 1 1443 666 262 149 29 chr12 112462803 112463078 -8794452 + MTEa LTR MaLR 4 311 -68 1 1443 216 0 0 0 chr12 112464863 112464887 -8792643 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1443 351 0 0 0 chr12 112464887 112464925 -8792605 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1443 482 290 24 0 chr12 112464934 112465058 -8792472 - RSINE1 SINE B4 -35 130 4 1 1443 858 196 112 0 chr12 112465087 112465266 -8792264 - B3 SINE B2 -16 200 2 1 1443 252 289 40 0 chr12 112465276 112465354 -8792176 - B1_Mur1 SINE Alu -20 127 49 1 1443 419 224 11 0 chr12 112465449 112465541 -8791989 + B1_Mus2 SINE Alu 1 98 -22 1 1443 261 337 12 35 chr12 112465567 112465653 -8791877 - RSINE1 SINE B4 -74 91 8 1 1443 262 226 38 0 chr12 112465658 112465711 -8791819 - ID_B1 SINE B4 -7 217 163 1 1443 235 333 57 0 chr12 112466056 112466161 -8791369 - Cheshire DNA MER1_type -2306 114 4 1 1443 241 278 56 0 chr12 112466177 112466267 -8791263 + L1M5 LINE L1 5641 5735 -505 1 1443 786 247 40 6 chr12 112466544 112466719 -8790811 + B3 SINE B2 35 215 -1 1 1443 249 306 146 0 chr12 112467002 112467146 -8790384 - L1M4 LINE L1 -1362 4784 4620 1 1443 402 100 0 0 chr12 112467536 112467596 -8789934 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1443 306 128 0 0 chr12 112467637 112467684 -8789846 + B1_Mur4 SINE Alu 5 51 -99 1 1443 1246 34 7 0 chr12 112467946 112468092 -8789438 + B1_Mus2 SINE Alu 1 147 0 1 1443 22 56 0 0 chr12 112468263 112468299 -8789231 + AT_rich Low_complexity Low_complexity 1 36 0 1 1443 292 202 21 151 chr12 112468645 112468666 -8788864 - MT2B LTR ERVL -351 250 235 1 1443 201 74 0 0 chr12 112468666 112468693 -8788837 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1443 292 202 21 151 chr12 112468693 112468764 -8788766 - MT2B LTR ERVL -367 234 170 1 1443 555 29 0 0 chr12 112468700 112468769 -8788761 - B1_Mus1 SINE Alu -79 69 1 1 1443 2226 175 69 16 chr12 112468797 112469233 -8788297 - RMER6B LTR ERVK -2 459 1 1 1443 188 116 0 65 chr12 112469407 112469453 -8788077 + T-rich Low_complexity Low_complexity 1 43 0 1 1443 1721 174 58 54 chr12 112469539 112469911 -8787619 + ORR1B2 LTR MaLR 18 367 0 1 1443 5217 230 58 42 chr12 112469919 112471258 -8786272 + ORR1B2-int LTR MaLR 10 1369 -1 1 1443 277 93 23 23 chr12 112471258 112471296 -8786234 + ORR1B2 LTR MaLR 1 39 -355 1 1443 2977 156 77 9 chr12 112471296 112471828 -8785702 + RLTR12A LTR ERVK 1 568 0 1 1443 379 149 20 0 chr12 112471830 112471934 -8785596 - B2_Mm2 SINE B2 -8 187 47 1 1443 1140 101 6 0 chr12 112471971 112472130 -8785400 - B2_Mm2 SINE B2 -35 160 1 1 1443 1578 154 79 32 chr12 112472150 112472465 -8785065 + ORR1B2 LTR MaLR 38 367 0 1 1443 954 104 29 14 chr12 112473642 112473814 -8783716 - L1_Mus3 LINE L1 -71 6567 6379 1 1443 1119 29 0 0 chr12 112474196 112474332 -8783198 + B2_Mm2 SINE B2 1 136 -59 1 1443 258 32 0 0 chr12 112474338 112474369 -8783161 + (CATA)n Simple_repeat Simple_repeat 1 31 0 1 1443 399 203 94 38 chr12 112475069 112475244 -8782286 + B3A SINE B2 2 188 -7 1 1443 1354 77 71 11 chr12 112475300 112475484 -8782046 + B2_Mm2 SINE B2 1 195 0 1 1443 920 155 0 7 chr12 112477697 112477840 -8779690 + B1_Mur2 SINE Alu 1 142 -7 1 1443 549 283 12 65 chr12 112477883 112478053 -8779477 - ID_B1 SINE B4 -63 161 1 1 1443 376 219 27 0 chr12 112478063 112478136 -8779394 - PB1D9 SINE Alu -1 119 45 1 1443 356 154 110 50 chr12 112478164 112478265 -8779265 - PB1D7 SINE Alu -1 119 13 1 1443 1354 51 67 6 chr12 112479170 112479349 -8778181 - B2_Mm1a SINE B2 -3 190 1 1 1443 310 227 40 32 chr12 112479443 112479552 -8777978 - PB1 SINE Alu -8 112 6 1 1443 493 237 21 246 chr12 112479556 112479841 -8777689 - B4A SINE B4 -62 230 10 1 1443 310 206 14 14 chr12 112480079 112480148 -8777382 + ID4_ SINE ID 2 70 -13 1 1443 1125 88 0 0 chr12 112480990 112481138 -8776392 - B1_Mus1 SINE Alu 0 148 1 1 1443 344 286 48 17 chr12 112481217 112481344 -8776186 - PB1D10 SINE Alu -20 127 1 1 1443 195 273 9 0 chr12 112482242 112482297 -8775233 - L2b LINE L2 -2 3424 3332 1 1443 23 0 0 0 chr12 112483539 112483562 -8773968 + AT_rich Low_complexity Low_complexity 1 23 0 1 1443 271 317 47 150 chr12 112483562 112483755 -8773775 - ID_B1 SINE B4 -28 196 24 1 1443 223 259 0 79 chr12 112483700 112483763 -8773767 - ID4_ SINE ID -11 72 15 1 1443 565 189 131 0 chr12 112484430 112484552 -8772978 - B1_Mur2 SINE Alu -5 144 7 1 1443 482 196 147 22 chr12 112484552 112484566 -8772964 - ID_B1 SINE B4 -5 219 67 1 1443 418 202 22 33 chr12 112484701 112484793 -8772737 + B3 SINE B2 126 216 0 1 1443 242 148 35 69 chr12 112485311 112485369 -8772161 + L1M5 LINE L1 5569 5624 -500 1 1443 201 204 41 0 chr12 112485439 112485488 -8772042 + (CCCTA)n Simple_repeat Simple_repeat 4 54 0 1 1443 741 95 25 25 chr12 112487407 112487526 -8770004 - B2_Mm2 SINE B2 -5 190 72 1 1443 1160 68 0 0 chr12 112491727 112491873 -8765657 + B1_Mus2 SINE Alu 2 147 0 1 1443 189 0 0 0 chr12 112491873 112491894 -8765636 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1443 489 177 244 17 chr12 112491935 112492050 -8765480 + B1_Mur4 SINE Alu 1 141 -9 1 1443 505 189 10 40 chr12 112492079 112492178 -8765352 + ID_B1 SINE B4 90 185 -39 1 1443 288 0 0 0 chr12 112492242 112492274 -8765256 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 1 1443 615 206 79 29 chr12 112492275 112492415 -8765115 - B1_Mus2 SINE Alu 0 147 1 1 1443 249 221 126 0 chr12 112492848 112492967 -8764563 - L1MA7 LINE L1 -298 5993 5856 1 1443 289 294 120 42 chr12 112492967 112493134 -8764396 + MER112 DNA MER1_type 65 244 -17 1 1443 600 237 90 26 chr12 112494023 112494179 -8763351 + B3 SINE B2 2 167 -49 1 1443 369 314 0 116 chr12 112494310 112494465 -8763065 - RSINE1 SINE B4 -13 152 16 1 1443 210 204 45 0 chr12 112494560 112494604 -8762926 - ID4_ SINE ID -10 73 28 1 1443 430 211 76 34 chr12 112494613 112494731 -8762799 - B1F SINE Alu -1 148 26 1 1443 1117 82 7 0 chr12 112494732 112494878 -8762652 + B1_Mus1 SINE Alu 2 148 0 1 1443 1021 128 0 0 chr12 112494909 112495050 -8762480 + B1_Mus2 SINE Alu 1 141 -6 1 1443 942 169 214 0 chr12 112495134 112495312 -8762218 + B3 SINE B2 1 216 0 1 1443 1442 74 16 11 chr12 112495318 112495509 -8762021 + B2_Mm2 SINE B2 1 192 -3 1 1443 229 204 43 0 chr12 112495531 112495592 -8761938 + PB1D9 SINE Alu 67 141 -8 1 1443 356 236 0 0 chr12 112495593 112495665 -8761865 + ID4 SINE ID 2 73 -10 1 1443 496 250 21 0 chr12 112495744 112495840 -8761690 + RSINE1 SINE B4 11 108 -57 1 1443 283 200 62 10 chr12 112495890 112495971 -8761559 + FLAM_A SINE Alu 23 114 -6 1 1443 1662 16 0 0 chr12 112496878 112497060 -8760470 + B2_Mm1a SINE B2 1 182 -11 1 1443 219 36 0 0 chr12 112497060 112497088 -8760442 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1443 342 283 131 23 chr12 112497269 112497399 -8760131 - B4A SINE B4 0 292 149 1 1443 349 271 362 48 chr12 112507902 112508172 -8749358 - MTEb LTR MaLR -21 358 5 1 1443 1190 61 0 0 chr12 112510555 112510702 -8746828 - B1_Mus2 SINE Alu 0 147 1 2 1443 382 218 117 9 chr12 112510816 112510927 -8746603 - B2_Mm2 SINE B2 -70 125 3 3 1443 334 262 12 48 chr12 112511292 112511376 -8746154 - ID4_ SINE ID -1 82 2 4 1443 387 0 0 0 chr12 112511408 112511451 -8746079 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1443 297 0 0 0 chr12 112511451 112511483 -8746047 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1443 267 246 0 16 chr12 112514496 112514558 -8742972 - B4A SINE B4 -208 84 24 7 1443 361 274 9 26 chr12 112514570 112514682 -8742848 - PB1 SINE Alu 0 127 17 8 1443 385 233 87 0 chr12 112514988 112515091 -8742439 + PB1D7 SINE Alu 2 113 -7 9 1443 263 274 63 0 chr12 112515091 112515186 -8742344 + B4 SINE B4 33 133 -159 1 1443 893 179 82 31 chr12 112515405 112515601 -8741929 + B3 SINE B2 1 206 -10 1 1443 943 93 192 0 chr12 112515626 112515777 -8741753 + B2_Mm2 SINE B2 2 181 -14 1 1443 1134 38 0 0 chr12 112515777 112515908 -8741622 + B1_Mus1 SINE Alu 2 132 -16 1 1443 284 70 23 0 chr12 112515922 112515965 -8741565 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1443 1476 39 27 11 chr12 112515968 112516151 -8741379 + B2_Mm2 SINE B2 2 187 -8 1 1443 1363 55 77 6 chr12 112516156 112516338 -8741192 + B2_Mm2 SINE B2 1 195 0 1 1443 1622 41 0 10 chr12 112516380 112516575 -8740955 + B2_Mm1a SINE B2 1 193 0 1 1443 807 101 17 4 chr12 112516631 112516774 -8740756 + B1_Mus1 SINE Alu 8 149 0 1 1443 973 128 11 28 chr12 112516933 112517110 -8740420 - B2_Mm2 SINE B2 -21 174 1 1 1443 1956 199 80 26 chr12 112517184 112517808 -8739722 + RMER19B LTR ERVK 1 794 -108 2 1443 513 0 0 0 chr12 112517808 112517865 -8739665 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 2 1443 1076 65 170 0 chr12 112517865 112518018 -8739512 - B2_Mm2 SINE B2 -16 179 1 2 1443 991 143 36 19 chr12 112518018 112518107 -8739423 + RMER19B LTR ERVK 795 882 -20 2 1443 389 37 0 36 chr12 112518299 112518355 -8739175 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 2 1443 1174 62 7 0 chr12 112518356 112518502 -8739028 - B1_Mus1 SINE Alu 0 148 2 2 1443 294 260 48 39 chr12 112518570 112518656 -8738874 + B1F1 SINE Alu 23 109 -40 2 1443 384 117 240 0 chr12 112518656 112518744 -8738786 + B3 SINE B2 3 112 -104 2 1443 1157 76 0 0 chr12 112518768 112518912 -8738618 - B1_Mus1 SINE Alu 0 148 5 2 1443 273 176 0 19 chr12 112518925 112518977 -8738553 - B4A SINE B4 -68 224 174 2 1443 312 27 0 0 chr12 112519038 112519075 -8738455 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 2 1443 799 151 0 12 chr12 112519075 112519190 -8738340 + polypyrimidine Low_complexity Low_complexity 46 160 0 3 1443 1189 62 7 0 chr12 112519190 112519336 -8738194 - B1_Mus2 SINE Alu 0 147 1 3 1443 1138 91 23 0 chr12 112519341 112519517 -8738013 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1443 799 151 0 12 chr12 112519517 112519556 -8737974 + polypyrimidine Low_complexity Low_complexity 2 40 0 3 1443 581 265 30 70 chr12 112519559 112519758 -8737772 - B3A SINE B2 -3 195 5 3 1443 605 271 14 20 chr12 112519812 112519959 -8737571 - B1_Mur1 SINE Alu -2 147 2 3 1443 822 245 9 32 chr12 112520009 112520228 -8737302 - B3 SINE B2 -2 214 1 3 1443 290 85 0 17 chr12 112520804 112520864 -8736666 - B2_Mm2 SINE B2 0 195 137 3 1443 1302 103 40 0 chr12 112520934 112521109 -8736421 - B2_Mm2 SINE B2 -12 183 2 3 1443 887 106 14 0 chr12 112521192 112521333 -8736197 + (GAAA)n Simple_repeat Simple_repeat 4 146 0 3 1443 952 145 14 7 chr12 112521336 112521482 -8736048 + B1_Mur1 SINE Alu 1 147 -2 4 1443 572 265 30 70 chr12 112521536 112521735 -8735795 + B3A SINE B2 5 195 -3 4 1443 708 98 0 0 chr12 112521739 112521841 -8735689 + (GA)n Simple_repeat Simple_repeat 2 103 0 4 1443 286 77 0 0 chr12 112521841 112521880 -8735650 - B2_Mm2 SINE B2 -83 112 74 3 1443 225 0 0 0 chr12 112522388 112522413 -8735117 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1443 609 110 0 0 chr12 112522563 112522654 -8734876 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 4 1443 453 66 0 0 chr12 112523653 112523714 -8733816 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1443 224 250 25 50 chr12 112523788 112523868 -8733662 + ID SINE ID 1 78 -146 4 1443 818 207 195 24 chr12 112524502 112524794 -8732736 - Lx9 LINE L1 -4 7640 7299 4 1443 1348 116 5 0 chr12 112524794 112524983 -8732547 - B2_Mm1a SINE B2 -3 190 1 4 1443 1079 151 111 0 chr12 112525010 112525209 -8732321 + Lx9 LINE L1 7016 7236 -408 4 1443 447 87 375 0 chr12 112525480 112525584 -8731946 + B1_Mus1 SINE Alu 6 148 0 5 1443 188 56 0 77 chr12 112525588 112525627 -8731903 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1443 282 56 0 0 chr12 112527352 112527388 -8730142 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1443 1363 126 95 20 chr12 112527725 112527977 -8729553 + MTC LTR MaLR 151 421 0 5 1443 556 179 111 0 chr12 112528762 112528879 -8728651 - B1F2 SINE Alu -3 146 17 5 1443 1389 128 214 31 chr12 112529322 112529354 -8728176 + ORR1B1 LTR MaLR 5 36 -358 5 1443 342 0 0 0 chr12 112529354 112529392 -8728138 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1443 1389 128 214 31 chr12 112529392 112529682 -8727848 + ORR1B1 LTR MaLR 37 386 -8 5 1443 794 180 150 21 chr12 112530281 112530474 -8727056 - MTC LTR MaLR -48 373 141 5 1443 633 161 134 24 chr12 112530546 112530673 -8726857 - B1_Mus2 SINE Alu -6 141 1 5 1443 341 296 23 0 chr12 112532647 112532735 -8724795 + ID_B1 SINE B4 135 224 0 5 1443 912 235 58 5 chr12 112535029 112535234 -8722296 - B3 SINE B2 0 216 1 6 1443 182 268 143 24 chr12 112535936 112536020 -8721510 - L4 LINE RTE -1765 264 171 6 1443 319 328 23 70 chr12 112538362 112538407 -8719123 + B4 SINE B4 48 86 -206 6 1443 451 258 5 2 chr12 112538407 112538518 -8719012 + PB1D9 SINE Alu 2 114 -35 6 1443 243 0 0 0 chr12 112538519 112538546 -8718984 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1443 390 299 86 0 chr12 112538560 112538677 -8718853 + RSINE1 SINE B4 4 130 -35 6 1443 1287 109 0 40 chr12 112538728 112538929 -8718601 + B2_Mm2 SINE B2 1 193 -2 6 1443 3833 37 4 2 chr12 112538934 112539390 -8718140 + L1Md_F3 LINE L1 6128 6584 0 6 1443 619 247 95 49 chr12 112539409 112539718 -8717812 + BGLII_B LTR ERVK 75 402 -43 6 1443 252 281 84 42 chr12 112539688 112539740 -8717790 + B4 SINE B4 35 91 -201 6 1443 381 139 152 0 chr12 112539740 112539819 -8717711 + B1_Mus2 SINE Alu 1 91 -56 7 1443 713 153 129 8 chr12 112540760 112540892 -8716638 + B1_Mur3 SINE Alu 2 149 0 7 1443 382 216 72 0 chr12 112540919 112541016 -8716514 + PB1D9 SINE Alu 7 110 -10 7 1443 1109 81 12 6 chr12 112541080 112541242 -8716288 + B2_Mm2 SINE B2 10 172 -23 7 1443 456 236 8 60 chr12 112541830 112541947 -8715583 - PB1D9 SINE Alu -5 115 5 7 1443 1531 183 85 11 chr12 112542424 112542777 -8714753 + ORR1C2 LTR MaLR 1 379 -5 7 1443 490 306 45 0 chr12 112544165 112544322 -8713208 + RSINE1 SINE B4 2 165 0 7 1443 333 231 87 96 chr12 112546633 112546748 -8710782 + B1F1 SINE Alu 3 148 -1 7 1443 1628 32 5 0 chr12 112546755 112546940 -8710590 + B2_Mm1t SINE B2 2 187 -6 7 1443 26 0 0 0 chr12 112546940 112546966 -8710564 + AT_rich Low_complexity Low_complexity 1 26 0 7 1443 781 109 101 0 chr12 112548114 112548233 -8709297 + B1_Mus2 SINE Alu 2 132 -15 8 1443 216 120 80 0 chr12 112548453 112548503 -8709027 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1443 693 156 122 8 chr12 112549515 112549638 -8707892 - B1_Mm SINE Alu -9 138 2 8 1443 216 321 70 23 chr12 112550058 112550144 -8707386 + PB1D10 SINE Alu 28 117 0 8 1443 487 223 0 18 chr12 112550201 112550315 -8707215 + B3 SINE B2 103 214 -2 8 1443 224 203 159 0 chr12 112550481 112550550 -8706980 - ID4 SINE ID -2 81 2 8 1443 366 222 0 0 chr12 112551099 112551171 -8706359 - PB1D10 SINE Alu -26 91 20 8 1443 282 234 63 11 chr12 112551847 112551942 -8705588 + PB1D10 SINE Alu 18 117 0 8 1443 239 287 84 56 chr12 112552186 112552293 -8705237 + MIR SINE MIR 86 195 -67 8 1443 217 170 43 0 chr12 112552354 112552401 -8705129 - B1F1 SINE Alu -91 58 10 8 1443 564 255 71 48 chr12 112553030 112553240 -8704290 - B3 SINE B2 0 216 2 9 1443 436 221 63 0 chr12 112553270 112553365 -8704165 + PB1D9 SINE Alu 1 101 -19 9 1443 977 246 10 0 chr12 112553365 112553564 -8703966 - B3 SINE B2 -14 202 2 9 1443 300 288 47 78 chr12 112553932 112554060 -8703470 + Looper DNA PiggyBac 1039 1162 -396 9 1443 231 212 94 0 chr12 112554063 112554148 -8703382 + Looper DNA PiggyBac 1357 1449 -109 9 1443 947 97 16 7 chr12 112554131 112554297 -8703233 - B2_Mm2 SINE B2 -19 174 6 9 1443 197 0 0 67 chr12 112554306 112554336 -8703194 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 9 1443 224 121 0 0 chr12 112554336 112554369 -8703161 - B2_Mm2 SINE B2 -152 43 11 9 1443 1251 41 7 0 chr12 112554396 112554543 -8702987 - B1_Mus1 SINE Alu 0 148 1 9 1443 754 271 22 11 chr12 112554572 112554751 -8702779 + B3A SINE B2 2 182 -16 9 1443 520 244 11 4 chr12 112554751 112555216 -8702314 + (CA)n Simple_repeat Simple_repeat 1 468 0 9 1443 304 303 65 8 chr12 112559036 112559159 -8698371 + RSINE1 SINE B4 29 158 -7 1 1443 278 260 290 30 chr12 112559951 112560082 -8697448 - RSINE1 SINE B4 0 165 1 1 1443 820 249 35 30 chr12 112560517 112560720 -8696810 + B3 SINE B2 1 204 -12 1 1443 287 217 33 0 chr12 112562248 112562308 -8695222 - ID4 SINE ID -16 67 6 1 1443 835 270 25 0 chr12 112562321 112562525 -8695005 - B3 SINE B2 -7 209 1 1 1443 614 230 29 22 chr12 112563721 112563859 -8693671 - B1_Mur1 SINE Alu -10 139 1 1 1443 324 0 0 0 chr12 112563870 112563906 -8693624 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1443 513 292 39 7 chr12 112563915 112564070 -8693460 - B3A SINE B2 -38 160 1 1 1443 222 258 32 16 chr12 112564544 112564607 -8692923 - B1_Mur4 SINE Alu -11 139 76 1 1443 225 330 11 21 chr12 112564721 112564814 -8692716 + CT-rich Low_complexity Low_complexity 4 95 0 1 1443 21 57 0 0 chr12 112564877 112564912 -8692618 + AT_rich Low_complexity Low_complexity 1 35 0 1 1443 665 116 34 51 chr12 112564919 112565037 -8692493 - B1_Mus1 SINE Alu -32 116 1 1 1443 284 306 78 35 chr12 112565208 112565323 -8692207 + RSINE1 SINE B4 46 165 0 1 1443 426 39 0 0 chr12 112565977 112566029 -8691501 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1443 301 292 51 63 chr12 112566957 112567094 -8690436 + B4 SINE B4 148 291 -1 1 1443 300 238 110 44 chr12 112567655 112567791 -8689739 + B3A SINE B2 2 146 -52 1 1443 279 182 18 0 chr12 112568473 112568528 -8689002 + PB1D10 SINE Alu 42 97 -20 1 1443 227 294 101 38 chr12 112568594 112568753 -8688777 + L1MC4 LINE L1 959 1127 -5088 1 1443 696 74 467 0 chr12 112569044 112569166 -8688364 + B2_Mm1t SINE B2 1 179 -14 1 1443 260 206 0 73 chr12 112569213 112569281 -8688249 + B3 SINE B2 47 109 -107 1 1443 239 89 54 0 chr12 112569270 112569326 -8688204 + B2_Mm2 SINE B2 137 195 0 1 1443 254 250 19 94 chr12 112569493 112569599 -8687931 + PB1D10 SINE Alu 15 112 -5 1 1443 247 232 0 0 chr12 112570256 112570312 -8687218 + B3 SINE B2 1 56 -160 1 1443 662 275 119 25 chr12 112570819 112571054 -8686476 + ORR1D2 LTR MaLR 107 363 -7 1 1443 714 152 64 14 chr12 112571120 112571260 -8686270 + B1_Mur2 SINE Alu 3 149 0 1 1443 234 282 84 0 chr12 112571512 112571583 -8685947 + ID4 SINE ID 2 78 -5 1 1443 464 246 98 0 chr12 112571852 112571974 -8685556 + RSINE1 SINE B4 2 135 -30 1 1443 378 0 0 0 chr12 112571993 112572035 -8685495 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1443 351 287 135 60 chr12 112572061 112572246 -8685284 + B3 SINE B2 8 206 -10 1 1443 558 263 80 0 chr12 112573257 112573394 -8684136 + RSINE1 SINE B4 3 150 -15 1 1443 299 253 132 0 chr12 112573499 112573590 -8683940 + B4A SINE B4 115 217 -75 1 1443 260 253 47 71 chr12 112573587 112573672 -8683858 + B3 SINE B2 106 188 -28 1 1443 206 128 0 41 chr12 112578719 112578768 -8678762 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1443 1591 214 82 8 chr12 112578913 112579289 -8678241 + MTD LTR MaLR 2 405 -14 1 1443 219 128 128 0 chr12 112579321 112579446 -8678084 + (CAGAG)n Simple_repeat Simple_repeat 2 142 0 1 1443 235 257 0 114 chr12 112579754 112579770 -8677760 + MT2B LTR ERVL 151 157 -444 1 1443 436 124 81 11 chr12 112579770 112579869 -8677661 + B1_Mus1 SINE Alu 2 119 -1 1 1443 528 93 0 0 chr12 112579871 112579946 -8677584 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 1 1443 633 197 65 14 chr12 112579960 112580099 -8677431 + B1_Mur1 SINE Alu 1 146 -3 1 1443 449 182 0 10 chr12 112580105 112580205 -8677325 + (CA)n Simple_repeat Simple_repeat 1 99 0 1 1443 1308 107 11 0 chr12 112581251 112581428 -8676102 + B2_Mm1t SINE B2 1 179 -14 1 1443 21 0 0 0 chr12 112581554 112581575 -8675955 + AT_rich Low_complexity Low_complexity 1 21 0 1 1443 554 250 116 15 chr12 112582293 112582492 -8675038 - L1M4c LINE L1 -6151 233 15 1 1443 519 186 123 9 chr12 112582606 112582720 -8674810 + B1_Mur2 SINE Alu 2 128 -21 1 1443 436 288 83 51 chr12 112583209 112583425 -8674105 + B4A SINE B4 50 272 -20 1 1443 289 301 26 26 chr12 112584094 112584210 -8673320 + MLT1C LTR MaLR 60 175 -292 1 1443 800 209 60 24 chr12 112584194 112584404 -8673126 - B3A SINE B2 -3 192 2 1 1443 386 289 158 14 chr12 112584404 112584616 -8672914 + MLT1C LTR MaLR 151 394 -73 1 1443 797 143 0 0 chr12 112584903 112585029 -8672501 - B1_Mus2 SINE Alu -21 126 1 1 1443 235 275 0 0 chr12 112584937 112585046 -8672484 - ORR1B1-int LTR MaLR -770 739 631 1 1443 25 99 0 0 chr12 112585908 112585989 -8671541 + AT_rich Low_complexity Low_complexity 1 81 0 1 1443 1157 88 0 0 chr12 112586056 112586204 -8671326 + B1_Mus1 SINE Alu 1 148 0 1 1443 205 296 15 46 chr12 112586458 112586589 -8670941 + (CTG)n Simple_repeat Simple_repeat 2 128 0 1 1443 325 242 125 0 chr12 112587596 112587724 -8669806 + L1MC4a LINE L1 6657 6800 -1082 1 1443 951 35 0 0 chr12 112588446 112588561 -8668969 + (GGA)n Simple_repeat Simple_repeat 3 117 0 1 1443 740 271 57 0 chr12 112588589 112588781 -8668749 + B3 SINE B2 1 203 -13 1 1443 332 260 18 71 chr12 112589039 112589151 -8668379 + MT2B LTR ERVL 153 258 -343 1 1443 630 133 158 0 chr12 112589056 112589176 -8668354 + B1_Mur2 SINE Alu 6 144 -5 1 1443 496 246 225 12 chr12 112589180 112589349 -8668181 - B3 SINE B2 -11 205 1 1 1443 252 207 62 0 chr12 112589508 112589569 -8667961 + B1F2 SINE Alu 1 68 -49 1 1443 1285 80 97 0 chr12 112590008 112590026 -8667504 - B2_Mm1t SINE B2 0 193 176 1 1443 315 0 0 0 chr12 112590026 112590061 -8667469 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1443 1285 80 97 0 chr12 112590061 112590218 -8667312 - B2_Mm1t SINE B2 -18 175 2 1 1443 422 287 39 79 chr12 112590414 112590592 -8666938 + B4A SINE B4 115 285 -7 1 1444 948 132 7 0 chr12 112591005 112591141 -8666389 - B1_Mur3 SINE Alu -12 137 1 1 1444 216 163 41 0 chr12 112592219 112592268 -8665262 + ID SINE ID 27 77 -147 1 1444 531 223 56 35 chr12 112592446 112592590 -8664940 + B1F1 SINE Alu 1 147 -2 1 1444 460 268 49 42 chr12 112592601 112592745 -8664785 + RSINE1 SINE B4 21 165 0 1 1444 1630 169 95 66 chr12 112592953 112593222 -8664308 - MTD LTR MaLR -12 407 117 1 1444 1128 103 0 0 chr12 112593222 112593367 -8664163 + B1_Mus1 SINE Alu 3 147 -1 1 1444 1630 169 95 66 chr12 112593367 112593476 -8664054 - MTD LTR MaLR -303 116 18 1 1444 609 222 8 31 chr12 112593698 112593828 -8663702 + RSINE1 SINE B4 1 127 -38 1 1444 190 109 0 61 chr12 112593863 112593912 -8663618 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 1 1444 715 288 34 42 chr12 112594014 112594250 -8663280 - B4A SINE B4 -49 243 10 1 1444 297 0 0 0 chr12 112595472 112595505 -8662025 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1444 365 316 122 14 chr12 112596961 112597182 -8660348 + L1ME1 LINE L1 5650 5894 -285 1 1444 522 0 0 0 chr12 112597286 112597344 -8660186 + (GGGA)n Simple_repeat Simple_repeat 2 59 0 1 1444 387 0 0 0 chr12 112597471 112597514 -8660016 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1444 493 276 42 123 chr12 112597528 112597788 -8659742 + B4 SINE B4 3 241 -51 1 1444 375 252 122 0 chr12 112597913 112598044 -8659486 + L1M4 LINE L1 5017 5163 -983 1 1444 611 158 106 57 chr12 112598046 112598187 -8659343 + B1_Mur1 SINE Alu 2 149 0 1 1444 300 333 71 0 chr12 112598379 112598478 -8659052 + PB1D10 SINE Alu 12 117 0 1 1444 475 290 74 70 chr12 112598673 112598888 -8658642 + L1M4 LINE L1 5176 5391 -755 1 1444 216 0 0 0 chr12 112598929 112598953 -8658577 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1444 231 243 42 14 chr12 112599191 112599262 -8658268 + PB1D10 SINE Alu 41 113 -4 1 1444 201 178 0 0 chr12 112601006 112601051 -8656479 + (CACG)n Simple_repeat Simple_repeat 3 47 0 1 1444 397 216 102 10 chr12 112601432 112601530 -8656000 + PB1D9 SINE Alu 1 107 -13 1 1444 571 60 0 23 chr12 112601546 112601632 -8655898 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 1 1444 323 238 0 0 chr12 112601670 112601733 -8655797 + B3A SINE B2 1 63 -135 1 1444 349 138 12 12 chr12 112601778 112601859 -8655671 + GA-rich Low_complexity Low_complexity 3 83 0 1 1444 469 343 94 31 chr12 112601866 112602377 -8655153 + L1MB8 LINE L1 3648 4190 -1956 1 1444 235 250 144 10 chr12 112602456 112602553 -8654977 - PB1D10 SINE Alu -1 119 10 1 1444 891 207 22 67 chr12 112602553 112602776 -8654754 + B3 SINE B2 1 213 -3 1 1444 635 200 38 8 chr12 112602797 112602928 -8654602 - B1_Mur4 SINE Alu -2 148 14 1 1444 845 203 14 0 chr12 112602931 112603079 -8654451 + B1_Mur4 SINE Alu 1 150 0 1 1444 723 256 162 0 chr12 112603234 112603543 -8653987 + L1MB8 LINE L1 5042 5400 -746 1 1444 541 251 123 47 chr12 112603635 112603936 -8653594 + L1MB8 LINE L1 5563 5886 -292 1 1444 231 270 16 0 chr12 112603938 112604001 -8653529 + PB1D7 SINE Alu 40 103 -17 1 1444 722 88 231 51 chr12 112604054 112604210 -8653320 - B2_Mm2 SINE B2 -11 184 1 1 1444 491 236 134 0 chr12 112604339 112604466 -8653064 + B1_Mur1 SINE Alu 5 148 -1 1 1444 1333 97 11 0 chr12 112604558 112604734 -8652796 + B2_Mm1t SINE B2 2 179 -14 1 1444 322 109 0 35 chr12 112604781 112604838 -8652692 + B2_Mm2 SINE B2 47 101 -94 1 1444 283 312 0 12 chr12 112605629 112605710 -8651820 + ID4_ SINE ID 1 80 -3 1 1444 215 125 0 24 chr12 112606140 112606181 -8651349 + (TTCC)n Simple_repeat Simple_repeat 4 43 0 1 1444 865 133 0 34 chr12 112606199 112606347 -8651183 + B1_Mur3 SINE Alu 7 149 0 1 1444 551 326 27 5 chr12 112606363 112606548 -8650982 - B3A SINE B2 -9 189 1 1 1444 906 260 63 7 chr12 112606767 112607038 -8650492 + B4A SINE B4 7 292 0 2 1444 244 308 75 19 chr12 112607435 112607594 -8649936 + HAL1 LINE L1 1509 1676 -831 2 1444 399 41 0 0 chr12 112607596 112607645 -8649885 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1444 180 0 0 0 chr12 112607657 112607677 -8649853 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1444 222 62 0 0 chr12 112608035 112608067 -8649463 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1444 748 228 0 26 chr12 112608077 112608230 -8649300 + B1_Mur2 SINE Alu 1 149 0 2 1444 629 265 6 61 chr12 112608706 112608887 -8648643 - B3 SINE B2 -37 179 9 2 1444 537 147 0 40 chr12 112609306 112609405 -8648125 + B1_Mur4 SINE Alu 40 134 -16 2 1444 228 67 0 0 chr12 112609411 112609441 -8648089 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 2 1444 21 57 0 0 chr12 112610018 112610053 -8647477 + AT_rich Low_complexity Low_complexity 1 35 0 2 1444 542 263 38 0 chr12 112610271 112610404 -8647126 + ID_B1 SINE B4 87 224 0 2 1444 26 30 0 0 chr12 112610469 112610502 -8647028 + AT_rich Low_complexity Low_complexity 1 33 0 2 1444 186 43 0 0 chr12 112610574 112610597 -8646933 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1444 1140 62 7 14 chr12 112610599 112610747 -8646783 - B1_Mus1 SINE Alu 0 148 2 2 1444 798 238 62 24 chr12 112610780 112610991 -8646539 - ID_B1 SINE B4 0 224 6 2 1444 1250 48 0 0 chr12 112611027 112611173 -8646357 + B1_Mus2 SINE Alu 2 147 0 2 1444 506 314 29 21 chr12 112611280 112611420 -8646110 + RSINE1 SINE B4 19 159 -6 2 1444 24 0 0 0 chr12 112611420 112611444 -8646086 + AT_rich Low_complexity Low_complexity 1 24 0 2 1444 216 0 0 0 chr12 112611465 112611489 -8646041 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1444 257 298 202 0 chr12 112612182 112612296 -8645234 + RSINE1 SINE B4 27 163 -2 2 1444 898 269 10 5 chr12 112612316 112612518 -8645012 + B3 SINE B2 4 206 -10 2 1444 482 225 71 9 chr12 112612561 112612673 -8644857 + PB1D9 SINE Alu 2 120 0 2 1444 288 154 0 0 chr12 112612677 112612729 -8644801 + GA-rich Low_complexity Low_complexity 2 53 0 2 1444 510 252 7 34 chr12 112613622 112613770 -8643760 - ID_B1 SINE B4 0 224 81 2 1444 22 35 0 0 chr12 112615553 112615582 -8641948 + GC_rich Low_complexity Low_complexity 1 29 0 2 1444 23 86 0 0 chr12 112615705 112615763 -8641767 + GC_rich Low_complexity Low_complexity 1 58 0 2 1444 986 47 0 8 chr12 112617333 112617463 -8640067 + B1_Mm SINE Alu 7 135 -12 2 1444 594 0 0 0 chr12 112617465 112617531 -8639999 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 2 1444 336 268 134 0 chr12 112617989 112618086 -8639444 - MER58A DNA MER1_type -114 110 1 2 1444 617 196 9 0 chr12 112618410 112618517 -8639013 + PB1D7 SINE Alu 5 112 -8 2 1444 1165 38 0 0 chr12 112618528 112618661 -8638869 + B1_Mus2 SINE Alu 1 133 -14 2 1444 522 0 0 0 chr12 112618661 112618719 -8638811 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1444 1069 51 0 0 chr12 112618728 112618866 -8638664 + B1_Mus2 SINE Alu 10 147 0 2 1444 557 268 133 31 chr12 112618887 112619083 -8638447 + ID_B1 SINE B4 7 222 -2 2 1444 306 296 119 15 chr12 112619336 112619538 -8637992 + L1MEc LINE L1 392 614 -5786 2 1444 378 316 82 12 chr12 112619711 112619881 -8637649 - ORR1E LTR MaLR -154 205 24 2 1444 399 302 68 32 chr12 112620072 112620291 -8637239 + L1MEc LINE L1 649 875 -5525 2 1444 494 295 141 117 chr12 112620339 112620634 -8636896 + L1MEc LINE L1 811 1160 -5240 2 1444 487 245 5 114 chr12 112620634 112620818 -8636712 + RSINE1 SINE B4 2 165 0 2 1444 494 295 141 117 chr12 112620818 112621020 -8636510 + L1MEc LINE L1 1161 1320 -5080 2 1444 824 275 24 19 chr12 112621021 112621232 -8636298 + B3 SINE B2 1 212 -4 2 1444 2011 199 28 16 chr12 112621253 112621677 -8635853 + Lx9 LINE L1 5399 5827 -20 2 1444 2095 99 3 0 chr12 112621677 112621979 -8635551 + ORR1A2 LTR MaLR 1 303 -24 2 1444 316 246 0 40 chr12 112621985 112622061 -8635469 + Lx9 LINE L1 5858 5930 -1714 2 1444 2410 169 68 111 chr12 112622036 112622729 -8634801 + Lx9 LINE L1 6949 7611 -33 2 1444 650 152 9 0 chr12 112622729 112622834 -8634696 - B1_Mus1 SINE Alu -41 107 2 2 1444 258 279 33 83 chr12 112622835 112623015 -8634515 + L1MEc LINE L1 1292 1462 -4938 2 1444 297 68 0 0 chr12 112623142 112623186 -8634344 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1444 589 357 86 20 chr12 112623430 112623600 -8633930 + ERVL-E-int LTR ERVL 2914 3098 -2569 2 1444 520 228 190 104 chr12 112623600 112623869 -8633661 + B4 SINE B4 1 292 0 2 1444 589 357 86 20 chr12 112623869 112624153 -8633377 + ERVL-E-int LTR ERVL 3099 3397 -2270 2 1444 198 0 0 0 chr12 112624310 112624332 -8633198 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 2 1444 3136 151 89 32 chr12 112625801 112626417 -8631113 - RMER19B LTR ERVK 0 902 252 2 1444 3285 14 3 5 chr12 112626417 112626785 -8630745 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1444 9186 44 87 0 chr12 112626785 112627987 -8629543 + IAPEz-int LTR ERVK 8 1313 -5168 2 1444 28091 16 1 2 chr12 112627986 112631261 -8626269 + IAPEz-int LTR ERVK 3210 6481 0 2 1444 3285 14 3 5 chr12 112631261 112631629 -8625901 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1444 900 174 83 58 chr12 112631629 112631933 -8625597 - RMER19B LTR ERVK -645 257 2 2 1444 524 186 0 19 chr12 112632285 112632389 -8625141 + ORR1D2 LTR MaLR 2 103 -267 2 1444 729 134 25 0 chr12 112632587 112632706 -8624824 + MurSatRep1 Unknown Unknown 612 733 -1404 2 1444 228 86 0 0 chr12 112632876 112632911 -8624619 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 2 1444 25 0 0 0 chr12 112632965 112632990 -8624540 + AT_rich Low_complexity Low_complexity 1 25 0 2 1444 725 205 38 12 chr12 112633023 112633209 -8624321 + ORR1D2 LTR MaLR 153 370 0 2 1444 338 298 34 42 chr12 112633209 112633321 -8624209 + ID_B1 SINE B4 114 224 0 2 1444 258 106 0 0 chr12 112633374 112633421 -8624109 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1444 688 86 4 26 chr12 112633555 112633671 -8623859 + B1_Mur4 SINE Alu 9 150 0 2 1444 188 311 54 0 chr12 112635695 112635769 -8621761 - MIRc SINE MIR -110 158 81 2 1444 217 235 321 0 chr12 112635919 112636000 -8621530 + MER5A DNA MER1_type 14 120 -69 2 1444 361 93 0 0 chr12 112636049 112636103 -8621427 + B1_Mur3 SINE Alu 75 128 -21 2 1444 494 185 110 9 chr12 112636107 112636216 -8621314 - MTD LTR MaLR -299 120 1 2 1444 758 278 78 42 chr12 112636396 112636680 -8620850 + RLTR17 LTR ERVK 102 383 -309 2 1444 728 282 0 28 chr12 112636750 112636929 -8620601 + RLTR31_Mur LTR ERVK 380 553 0 2 1444 2687 64 3 0 chr12 112637855 112638181 -8619349 + ORR1A2 LTR MaLR 1 327 0 2 1444 200 358 70 14 chr12 112638263 112638405 -8619125 + MIR SINE MIR 80 245 -23 2 1444 485 250 65 85 chr12 112638662 112638863 -8618667 + B3A SINE B2 1 197 -1 2 1444 1036 77 219 0 chr12 112639572 112639727 -8617803 - B2_Mm2 SINE B2 -5 190 2 2 1444 516 286 52 57 chr12 112640853 112641046 -8616484 - B3A SINE B2 -1 197 6 2 1444 1031 155 144 0 chr12 112641195 112641382 -8616148 - B3 SINE B2 0 216 3 2 1444 468 0 0 0 chr12 112641382 112641434 -8616096 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1444 270 277 175 8 chr12 112641435 112641555 -8615975 - RLTR17 LTR ERVK -2 690 551 2 1444 186 43 0 0 chr12 112641618 112641641 -8615889 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2 1444 295 145 39 13 chr12 112641960 112642037 -8615493 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 2 1444 659 141 5 63 chr12 112642050 112642240 -8615290 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2 1444 799 271 104 90 chr12 112642270 112642749 -8614781 - MT2A LTR ERVL -44 489 4 2 1444 1135 97 0 0 chr12 112643444 112643589 -8613941 - B1_Mus1 SINE Alu -3 145 1 2 1444 210 163 0 23 chr12 112646018 112646062 -8611468 + (CACCC)n Simple_repeat Simple_repeat 5 47 0 2 1444 227 244 20 91 chr12 112646349 112646448 -8611082 + L2b LINE L2 3082 3173 -202 2 1444 243 0 0 0 chr12 112646651 112646678 -8610852 + (GGA)n Simple_repeat Simple_repeat 3 29 0 2 1444 188 279 117 58 chr12 112646804 112646941 -8610589 + MIR3 SINE MIR 8 152 -56 2 1444 420 232 141 23 chr12 112647147 112647275 -8610255 + B1F1 SINE Alu 5 147 -2 2 1444 186 203 12 40 chr12 112650627 112650677 -8606853 - MIRc SINE MIR -121 155 103 2 1444 469 238 50 0 chr12 112652327 112652428 -8605102 + ID_B1 SINE B4 84 189 -35 2 1444 442 219 394 0 chr12 112652433 112652588 -8604942 + B3 SINE B2 1 216 0 2 1444 1052 190 67 0 chr12 112652592 112652787 -8604743 + B3 SINE B2 3 210 -6 2 1444 211 208 0 0 chr12 112652809 112652862 -8604668 + T-rich Low_complexity Low_complexity 5 57 0 2 1444 448 256 45 73 chr12 112653433 112653610 -8603920 + MLT1B LTR MaLR 15 186 -204 2 1444 2646 74 3 0 chr12 112654300 112654626 -8602904 - ORR1A2 LTR MaLR 0 327 1 2 1444 441 241 224 0 chr12 112654698 112654814 -8602716 + B1_Mur2 SINE Alu 3 144 -5 2 1444 222 191 0 0 chr12 112654818 112654865 -8602665 + GA-rich Low_complexity Low_complexity 2 48 0 2 1444 267 152 0 0 chr12 112658918 112658964 -8598566 + CT-rich Low_complexity Low_complexity 3 48 0 2 1444 1095 215 0 19 chr12 112658976 112658998 -8598532 - B3 SINE B2 -11 205 187 2 1444 411 113 0 0 chr12 112658998 112659060 -8598470 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1444 1095 215 0 19 chr12 112659060 112659246 -8598284 - B3 SINE B2 -30 186 1 2 1444 324 273 81 0 chr12 112660861 112660960 -8596570 - MIRb SINE MIR -126 142 36 2 1444 1404 87 11 0 chr12 112663081 112663266 -8594264 - B2_Mm2 SINE B2 -8 187 1 2 1444 271 271 80 11 chr12 112664896 112665047 -8592483 + MIR SINE MIR 22 192 -84 2 1444 225 0 0 0 chr12 112665072 112665097 -8592433 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2 1444 337 145 0 5 chr12 112665113 112665178 -8592352 - B2_Mm2 SINE B2 -107 109 47 2 1444 1321 85 17 0 chr12 112665248 112665424 -8592106 - B2_Mm1t SINE B2 -14 179 1 2 1444 820 145 310 11 chr12 112665828 112666002 -8591528 + URR1A DNA MER1_type 1 226 0 2 1444 216 0 0 0 chr12 112668490 112668514 -8589016 + (GCCTG)n Simple_repeat Simple_repeat 2 25 0 2 1444 601 261 77 41 chr12 112669487 112669683 -8587847 + B3 SINE B2 14 216 0 2 1444 189 0 0 0 chr12 112671500 112671521 -8586009 + (G)n Simple_repeat Simple_repeat 1 21 0 2 1444 1191 85 0 0 chr12 112671821 112672021 -8585509 + (TG)n Simple_repeat Simple_repeat 1 200 0 2 1444 1251 214 11 87 chr12 112672083 112672356 -8585174 - RMER17C LTR ERVK 0 410 145 3 1444 730 73 9 9 chr12 112672356 112672467 -8585063 + (GA)n Simple_repeat Simple_repeat 1 111 0 3 1444 1251 214 11 87 chr12 112672467 112672628 -8584902 - RMER17C LTR ERVK -266 144 9 3 1444 522 70 0 0 chr12 112673213 112673284 -8584246 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1444 685 215 22 0 chr12 112673766 112673901 -8583629 - B1_Mur1 SINE Alu -7 142 5 3 1444 318 249 113 91 chr12 112673800 112673986 -8583544 - MT2B LTR ERVL -341 260 71 3 1444 368 289 62 118 chr12 112673901 112673923 -8583607 - B4 SINE B4 -69 219 72 3 1444 720 212 150 35 chr12 112674035 112674235 -8583295 + ID_B1 SINE B4 2 224 0 3 1444 230 284 45 11 chr12 112674511 112674600 -8582930 + MIR SINE MIR 5 96 -166 3 1444 688 200 24 0 chr12 112675269 112675394 -8582136 + B1_Mur2 SINE Alu 4 131 -18 3 1444 196 195 24 0 chr12 112675757 112675798 -8581732 + MIRc SINE MIR 111 152 -116 3 1444 330 263 69 20 chr12 112676542 112676643 -8580887 + MIR SINE MIR 112 217 -45 3 1444 306 341 101 14 chr12 112676910 112677118 -8580412 + RLTR40 LTR ERVK 47 272 -545 3 1444 1496 226 124 28 chr12 112677143 112677603 -8579927 - RMER15 LTR ERVL -14 561 58 3 1444 928 186 6 6 chr12 112678347 112678520 -8579010 + B3A SINE B2 1 173 -25 3 1444 255 254 134 8 chr12 112678531 112678650 -8578880 + L1MB3 LINE L1 6050 6183 0 3 1444 1238 35 0 0 chr12 112678666 112678807 -8578723 + B1_Mus1 SINE Alu 1 141 -7 3 1444 432 0 0 0 chr12 112678813 112678861 -8578669 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1444 850 161 15 0 chr12 112679696 112679833 -8577697 - B1_Mus1 SINE Alu -8 140 2 3 1444 223 247 39 0 chr12 112684000 112684077 -8573453 + (CGG)n Simple_repeat Simple_repeat 2 81 0 3 1444 23 0 0 0 chr12 112687601 112687624 -8569906 + GC_rich Low_complexity Low_complexity 1 23 0 3 1444 288 0 0 0 chr12 112688183 112688215 -8569315 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1444 241 303 175 12 chr12 112689805 112689979 -8567551 - MIRb SINE MIR -1 261 60 3 1444 350 375 11 0 chr12 112690288 112690464 -8567066 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 3 1444 761 204 7 0 chr12 112690486 112690780 -8566750 + (TCCA)n Simple_repeat Simple_repeat 1 296 0 3 1444 954 167 0 0 chr12 112690813 112690993 -8566537 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 3 1444 720 200 0 0 chr12 112691010 112691180 -8566350 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 3 1444 536 346 73 26 chr12 112692481 112692784 -8564746 - MLT1D LTR MaLR -2 503 187 3 1444 270 132 0 0 chr12 112693751 112693804 -8563726 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1444 282 298 185 0 chr12 112695298 112695476 -8562054 + L1MC LINE L1 5633 5843 -2039 3 1444 236 274 48 0 chr12 112695757 112695819 -8561711 - L2 LINE L2 -2128 1291 1227 3 1444 187 317 167 24 chr12 112696000 112696126 -8561404 - L2 LINE L2 -2442 977 834 3 1444 1053 136 10 14 chr12 112696742 112696970 -8560560 - ORR1A4 LTR MaLR 0 329 28 3 1444 235 247 65 0 chr12 112697258 112697335 -8560195 - ID4 SINE ID -1 82 1 3 1444 243 337 12 0 chr12 112697439 112697525 -8560005 - MLT1H-int LTR MaLR -185 1224 1138 3 1444 559 224 154 0 chr12 112697920 112698076 -8559454 - ID_B1 SINE B4 -30 194 15 3 1444 331 372 15 25 chr12 112698265 112698461 -8559069 - ERVL-E-int LTR ERVL -742 4925 4732 3 1444 343 364 49 0 chr12 112698685 112698828 -8558702 - ERVL-E-int LTR ERVL -1206 4461 4312 3 1444 555 270 235 1 chr12 112699056 112699317 -8558213 + MLT1C LTR MaLR 12 331 -136 3 1444 936 51 0 0 chr12 112699317 112699435 -8558095 + (TG)n Simple_repeat Simple_repeat 2 119 0 3 1444 501 284 163 101 chr12 112699435 112699529 -8558001 + MLT1C LTR MaLR 288 389 -1 3 1444 343 297 0 23 chr12 112700059 112700190 -8557340 + L1MB3 LINE L1 6007 6134 -49 3 1444 853 240 33 33 chr12 112700198 112700413 -8557117 + B3 SINE B2 2 216 0 3 1444 841 183 7 7 chr12 112700480 112700623 -8556907 + B1_Mur1 SINE Alu 1 143 -6 3 1444 323 244 48 12 chr12 112700655 112700738 -8556792 + PB1D10 SINE Alu 19 104 -13 3 1444 453 19 0 0 chr12 112700738 112700792 -8556738 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 3 1444 219 227 0 0 chr12 112701031 112701075 -8556455 + (CACG)n Simple_repeat Simple_repeat 4 47 0 3 1444 916 231 33 14 chr12 112701235 112701446 -8556084 + B3 SINE B2 1 215 -1 3 1444 1204 75 0 0 chr12 112701594 112701741 -8555789 - B1_Mus1 SINE Alu 0 148 2 3 1444 388 396 82 9 chr12 112701840 112702156 -8555374 - ERVL-E-int LTR ERVL -3064 2603 2265 3 1444 368 183 17 43 chr12 112702556 112702668 -8554862 - B1F1 SINE Alu -7 113 2 3 1444 224 133 0 43 chr12 112703584 112703631 -8553899 + (CATA)n Simple_repeat Simple_repeat 2 46 0 3 1444 416 306 65 0 chr12 112703964 112704163 -8553367 - L1MC4a LINE L1 -2051 5831 5620 3 1444 282 370 50 36 chr12 112704294 112704513 -8553017 + L1ME1 LINE L1 5958 6179 0 3 1444 245 290 16 0 chr12 112704553 112704615 -8552915 + RSINE1 SINE B4 78 140 -25 3 1444 344 79 48 199 chr12 112704616 112704878 -8552652 + (CAGTG)n Simple_repeat Simple_repeat 1 222 0 3 1444 602 200 18 9 chr12 112705019 112705130 -8552400 + PB1D9 SINE Alu 2 113 -7 3 1444 450 270 10 0 chr12 112705135 112705235 -8552295 + B3A SINE B2 36 136 -62 3 1444 219 36 0 0 chr12 112705253 112705281 -8552249 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1444 555 81 0 0 chr12 112705511 112705597 -8551933 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 1444 431 233 8 98 chr12 112705801 112705934 -8551596 + MT2B LTR ERVL 144 264 -337 3 1444 964 77 0 0 chr12 112705839 112705969 -8551561 + B1_Mus1 SINE Alu 19 148 0 3 1444 198 62 20 59 chr12 112705969 112706020 -8551510 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1444 430 223 11 11 chr12 112707015 112707110 -8550420 + RSINE1 SINE B4 3 97 -68 3 1444 288 0 0 0 chr12 112707136 112707168 -8550362 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1444 876 155 14 34 chr12 112708111 112708258 -8549272 - B1_Mus1 SINE Alu 0 148 5 3 1444 181 0 69 0 chr12 112708385 112708414 -8549116 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 3 1444 471 258 89 0 chr12 112708496 112708620 -8548910 - B1F SINE Alu -7 142 8 3 1444 241 267 44 106 chr12 112708917 112709046 -8548484 - L1MEc LINE L1 -5077 1323 1195 3 1444 564 269 89 22 chr12 112709046 112709225 -8548305 - B3A SINE B2 -7 191 1 3 1444 241 267 44 106 chr12 112709225 112709275 -8548255 - L1MEc LINE L1 -5206 1194 1155 3 1444 389 271 9 0 chr12 112709275 112709290 -8548240 - B1_Mur2 SINE Alu -30 119 105 3 1444 393 39 0 0 chr12 112709290 112709341 -8548189 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1444 389 271 9 0 chr12 112709341 112709432 -8548098 - B1_Mur2 SINE Alu -45 104 13 3 1444 1713 197 211 42 chr12 112709447 112709903 -8547627 + MT2A LTR ERVL 1 533 0 3 1444 924 261 94 78 chr12 112710012 112710386 -8547144 - RLTR14 LTR ERV1 0 382 3 3 1444 1505 53 5 21 chr12 112710418 112710609 -8546921 + B2_Mm2 SINE B2 1 188 -7 3 1444 1479 27 20 46 chr12 112710617 112710777 -8546753 + B2_Mm1a SINE B2 2 160 -33 3 1444 279 0 0 0 chr12 112710777 112710808 -8546722 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 1444 1479 27 20 46 chr12 112710808 112710842 -8546688 + B2_Mm1a SINE B2 161 191 -2 3 1444 398 335 94 15 chr12 112710909 112711112 -8546418 - MER44B DNA MER2_type -321 229 11 3 1444 582 255 0 0 chr12 112712648 112712928 -8544602 + (CA)n Simple_repeat Simple_repeat 1 280 0 3 1444 619 234 58 13 chr12 112713530 112713686 -8543844 + B3 SINE B2 2 164 -52 3 1444 1082 128 0 11 chr12 112714116 112714298 -8543232 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1444 727 133 15 15 chr12 112714298 112714435 -8543095 + GA-rich Low_complexity Low_complexity 1 137 0 3 1444 346 278 9 44 chr12 112714525 112714638 -8542892 - PB1D10 SINE Alu -2 115 7 3 1444 1594 161 69 142 chr12 112715224 112715631 -8541899 - RMER19B LTR ERVK -525 377 1 3 1444 352 249 146 6 chr12 112715896 112716063 -8541467 + ERVL-B4-int LTR ERVL 4129 4365 -1392 3 1444 2455 76 41 0 chr12 112716162 112716476 -8541054 - ORR1A2 LTR MaLR 0 327 1 3 1444 934 292 109 31 chr12 112716502 112716852 -8540678 - MTEa LTR MaLR -2 377 1 3 1444 450 274 30 30 chr12 112718035 112718167 -8539363 + RSINE1 SINE B4 28 159 -6 3 1444 387 0 0 0 chr12 112718175 112718218 -8539312 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1444 351 204 111 52 chr12 112718277 112718410 -8539120 + B3 SINE B2 41 209 -7 3 1444 463 307 105 13 chr12 112718469 112718697 -8538833 + MLT1F-int LTR MaLR 694 942 -547 3 1444 258 337 86 62 chr12 112718764 112718973 -8538557 - MLT1F-int LTR MaLR -1059 430 217 3 1444 1620 38 0 0 chr12 112719978 112720162 -8537368 + B2_Mm1a SINE B2 1 184 -9 3 1444 1197 94 6 0 chr12 112720175 112720345 -8537185 + B2_Mm1t SINE B2 1 171 -22 3 1444 299 115 0 16 chr12 112720392 112720454 -8537076 + B2_Mm2 SINE B2 135 195 0 3 1444 270 337 0 27 chr12 112720472 112720522 -8537008 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 3 1444 207 0 0 0 chr12 112720522 112720545 -8536985 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1444 417 316 6 6 chr12 112720545 112720743 -8536787 + (TG)n Simple_repeat Simple_repeat 1 198 0 3 1444 429 20 0 0 chr12 112721262 112721312 -8536218 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1444 252 0 0 0 chr12 112721671 112721699 -8535831 + (TTA)n Simple_repeat Simple_repeat 1 28 0 3 1444 1234 48 7 0 chr12 112721717 112721863 -8535667 + B1_Mus1 SINE Alu 2 148 0 3 1445 852 127 77 7 chr12 112721925 112722068 -8535462 - Lx4A LINE L1 -1 7057 6905 3 1445 396 88 0 0 chr12 112722157 112722221 -8535309 + B1_Mur4 SINE Alu 57 150 0 3 1445 276 53 0 0 chr12 112722226 112722264 -8535266 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1445 226 254 29 29 chr12 112722509 112722578 -8534952 + ID2 SINE ID 3 71 -12 3 1445 421 271 100 0 chr12 112725755 112725895 -8531635 + RMER15 LTR ERVL 381 534 -41 3 1445 945 109 21 21 chr12 112725895 112726028 -8531502 + B1_Mur4 SINE Alu 2 137 -13 3 1445 288 0 0 0 chr12 112726028 112726060 -8531470 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 3 1445 336 263 193 8 chr12 112726186 112726305 -8531225 - B1_Mus1 SINE Alu -7 141 1 3 1445 238 336 90 36 chr12 112726431 112726542 -8530988 + MER21B LTR ERV1 231 347 -516 4 1445 239 196 36 0 chr12 112727783 112727839 -8529691 + MTE2b LTR MaLR 19 76 -303 4 1445 414 0 0 0 chr12 112728284 112728330 -8529200 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1445 216 337 32 11 chr12 112728358 112728451 -8529079 + L2a LINE L2 3041 3135 -291 4 1445 530 272 63 68 chr12 112728481 112728653 -8528877 + MLT1C LTR MaLR 1 172 -295 4 1445 1028 271 7 66 chr12 112728653 112728878 -8528652 + B4 SINE B4 2 218 -74 4 1445 549 0 0 0 chr12 112728878 112728939 -8528591 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1445 1028 271 7 66 chr12 112728939 112729014 -8528516 + B4 SINE B4 219 284 -8 4 1445 530 272 63 68 chr12 112729014 112729046 -8528484 + MLT1C LTR MaLR 173 204 -263 4 1445 558 275 60 0 chr12 112729445 112729594 -8527936 + RSINE1 SINE B4 8 165 0 4 1445 227 317 74 48 chr12 112729667 112729731 -8527799 + RLTR25A LTR ERVK 385 575 -525 4 1445 330 234 0 123 chr12 112729731 112729853 -8527677 + MT2B LTR ERVL 151 257 -344 4 1445 643 227 0 0 chr12 112729753 112729872 -8527658 + B1_Mur1 SINE Alu 5 123 -26 4 1445 2623 65 3 3 chr12 112730238 112730561 -8526969 + ORR1A2 LTR MaLR 5 327 0 4 1445 279 282 22 51 chr12 112730987 112731125 -8526405 - IAP-d-int LTR ERVK -16 6526 6393 4 1445 296 234 144 36 chr12 112731520 112731631 -8525899 + RLTR20B3 LTR ERVK 1 123 -454 4 1445 991 267 71 32 chr12 112731645 112731955 -8525575 + RLTR20B3 LTR ERVK 225 546 -31 4 1445 2896 270 32 34 chr12 112731986 112732998 -8524532 - RMER16-int LTR ERVK -417 4989 3980 4 1445 1874 136 18 18 chr12 112733235 112733565 -8523965 - RMER16-int LTR ERVK -1426 3980 3651 4 1445 22 35 0 0 chr12 112733663 112733692 -8523838 + AT_rich Low_complexity Low_complexity 1 29 0 4 1445 31 26 0 0 chr12 112733737 112733775 -8523755 + AT_rich Low_complexity Low_complexity 1 38 0 4 1445 3481 144 39 40 chr12 112734069 112734785 -8522745 - RLTR19-int LTR ERVK -2158 3979 3265 4 1445 1074 47 0 0 chr12 112735055 112735183 -8522347 + B1_Mus1 SINE Alu 2 129 -19 4 1445 936 201 65 10 chr12 112735369 112735570 -8521960 + B3 SINE B2 5 216 0 4 1445 617 244 250 0 chr12 112735596 112735768 -8521762 + B3 SINE B2 1 215 -1 4 1445 1185 127 0 0 chr12 112735790 112736140 -8521390 + (CA)n Simple_repeat Simple_repeat 1 350 0 4 1445 313 28 0 0 chr12 112736141 112736177 -8521353 + HAL1-3A_ME LINE L1 1977 2012 -846 4 1445 472 215 0 31 chr12 112736179 112736275 -8521255 + RSINE1 SINE B4 11 103 -62 4 1445 670 184 78 42 chr12 112736448 112736590 -8520940 + B1_Mus1 SINE Alu 1 147 -1 4 1445 299 256 57 164 chr12 112736645 112736804 -8520726 - B3 SINE B2 -1 215 74 4 1445 5602 208 42 14 chr12 112736820 112738062 -8519468 + MERVK26-int LTR ERVK 4673 5948 -971 4 1445 2710 130 17 24 chr12 112738074 112738525 -8519005 + RMER16 LTR ERVK 1 533 0 4 1445 2801 242 80 27 chr12 112738526 112739451 -8518079 + MERVK26-int LTR ERVK 5944 6917 -2 4 1445 567 0 0 0 chr12 112739642 112739705 -8517825 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1445 345 247 0 12 chr12 112739997 112740079 -8517451 - B3A SINE B2 -117 81 1 4 1445 751 210 43 0 chr12 112740110 112740248 -8517282 + B1_Mur1 SINE Alu 1 144 -5 4 1445 589 164 236 0 chr12 112740485 112740595 -8516935 - B1_Mus1 SINE Alu -11 137 2 4 1445 909 242 26 16 chr12 112740800 112740980 -8516550 + B3 SINE B2 1 182 -34 4 1445 2233 101 67 126 chr12 112740980 112741400 -8516130 + RMER19B LTR ERVK 3 397 -505 4 1445 244 186 164 41 chr12 112741416 112741489 -8516041 - ORR1E LTR MaLR -172 187 106 4 1445 186 143 0 0 chr12 112741899 112741934 -8515596 + (GGGAA)n Simple_repeat Simple_repeat 4 38 0 4 1445 556 246 29 73 chr12 112741937 112742073 -8515457 + ID_B1 SINE B4 78 207 -17 4 1445 438 20 0 0 chr12 112742240 112742291 -8515239 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1445 645 218 227 11 chr12 112742626 112742802 -8514728 + B3 SINE B2 1 214 -2 4 1445 1240 93 6 11 chr12 112743739 112743913 -8513617 - B2_Mm1a SINE B2 -19 174 2 4 1445 872 132 15 7 chr12 112744002 112744139 -8513391 + B1_Mur2 SINE Alu 11 148 -1 4 1445 528 298 58 45 chr12 112744151 112744394 -8513136 + B4A SINE B4 5 250 -42 4 1445 895 100 165 21 chr12 112744449 112744643 -8512887 - URR1A DNA MER1_type -4 222 1 4 1445 219 244 295 0 chr12 112744699 112744777 -8512753 + PB1D10 SINE Alu 11 111 -6 4 1445 1128 119 27 16 chr12 112744810 112744997 -8512533 + B2_Mm2 SINE B2 1 189 -6 4 1445 633 192 25 8 chr12 112745145 112745266 -8512264 + B1_Mus1 SINE Alu 25 147 -1 4 1445 952 228 57 0 chr12 112745285 112745478 -8512052 + B3 SINE B2 3 206 -10 4 1445 870 210 92 61 chr12 112745684 112746036 -8511494 + RMER16 LTR ERVK 1 533 0 4 1445 1080 203 61 70 chr12 112746184 112746496 -8511034 - MTD-int LTR MaLR -930 328 20 4 1445 1658 204 75 19 chr12 112746539 112746569 -8510961 - MTD LTR MaLR 0 419 385 4 1445 2630 62 9 0 chr12 112746569 112746889 -8510641 - ORR1A2 LTR MaLR 0 327 5 4 1445 1658 204 75 19 chr12 112746889 112747233 -8510297 - MTD LTR MaLR -35 384 24 4 1445 384 315 108 103 chr12 112747395 112747705 -8509825 + Looper DNA PiggyBac 1081 1408 -150 4 1445 499 295 156 6 chr12 112747705 112747872 -8509658 - B3A SINE B2 -6 192 1 4 1445 384 315 108 103 chr12 112747872 112747968 -8509562 + Looper DNA PiggyBac 1409 1489 -69 4 1445 297 0 0 0 chr12 112747978 112748011 -8509519 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1445 686 156 48 69 chr12 112748015 112748139 -8509391 + B1_Mur4 SINE Alu 3 118 -32 4 1445 233 75 25 0 chr12 112748139 112748179 -8509351 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1445 686 156 48 69 chr12 112748179 112748199 -8509331 + B1_Mur4 SINE Alu 119 143 -7 4 1445 897 190 0 0 chr12 112748236 112748415 -8509115 + (TATG)n Simple_repeat Simple_repeat 2 180 0 4 1445 551 333 29 0 chr12 112748431 112748602 -8508928 - B3 SINE B2 -14 202 27 4 1445 1266 48 0 0 chr12 112748608 112748754 -8508776 - B1_Mus2 SINE Alu 0 147 2 4 1445 484 153 34 11 chr12 112748887 112748980 -8508550 + B1_Mus1 SINE Alu 6 109 -39 4 1445 234 289 62 50 chr12 112749068 112749148 -8508382 - PB1 SINE Alu -25 102 22 4 1445 1224 80 0 0 chr12 112749360 112749613 -8507917 + (GAAA)n Simple_repeat Simple_repeat 1 253 0 4 1445 216 0 0 0 chr12 112750637 112750661 -8506869 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1445 1282 41 0 0 chr12 112750661 112750808 -8506722 - B1_Mm SINE Alu 0 147 1 4 1445 346 297 0 0 chr12 112750906 112750997 -8506533 + PB1D10 SINE Alu 1 91 -26 4 1445 257 274 128 20 chr12 112751043 112751192 -8506338 + ID_B1 SINE B4 12 176 -48 4 1445 369 229 12 35 chr12 112751117 112751203 -8506327 + PB1D10 SINE Alu 23 106 -11 4 1445 883 223 82 5 chr12 112751219 112751426 -8506104 + ID_B1 SINE B4 2 224 0 4 1445 1628 42 0 0 chr12 112751493 112751684 -8505846 + B2_Mm1t SINE B2 2 192 -1 4 1445 1037 129 0 0 chr12 112751694 112751841 -8505689 + B1_Mus2 SINE Alu 1 147 0 4 1445 357 159 0 0 chr12 112751841 112751904 -8505626 + A-rich Low_complexity Low_complexity 1 63 0 4 1445 227 182 193 35 chr12 112752615 112752672 -8504858 + LTR16B2 LTR ERVL 109 174 -288 4 1445 231 36 0 0 chr12 112753223 112753251 -8504279 + (GGA)n Simple_repeat Simple_repeat 3 30 0 4 1445 240 250 0 0 chr12 112753367 112753415 -8504115 + ID_B1 SINE B4 174 221 -3 4 1445 576 0 0 0 chr12 112753556 112753620 -8503910 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1445 770 213 33 7 chr12 112753621 112753772 -8503758 - B3A SINE B2 -38 160 6 4 1445 225 156 0 43 chr12 112753824 112753836 -8503694 - B1F SINE Alu -2 147 138 4 1445 195 69 0 0 chr12 112753836 112753865 -8503665 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1445 225 156 0 43 chr12 112753865 112753899 -8503631 - B1F SINE Alu -12 137 104 4 1445 236 190 28 17 chr12 112753871 112753940 -8503590 - B1_Mus1 SINE Alu -77 72 2 4 1445 303 28 0 0 chr12 112753944 112753980 -8503550 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1445 258 105 0 0 chr12 112754043 112754081 -8503449 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 4 1445 476 324 27 43 chr12 112754083 112754267 -8503263 - MT2A LTR ERVL -85 448 268 4 1445 421 295 80 94 chr12 112754242 112754530 -8503000 - MTEa LTR MaLR -95 284 1 4 1445 463 202 100 9 chr12 112754713 112754823 -8502707 + PB1D7 SINE Alu 1 120 0 4 1445 802 192 13 27 chr12 112754827 112754977 -8502553 + B1_Mur2 SINE Alu 1 148 -1 4 1445 481 284 48 41 chr12 112755403 112755550 -8501980 - B1F SINE Alu -1 148 1 4 1445 329 314 29 19 chr12 112755550 112755651 -8501879 - ID_B1 SINE B4 -111 113 12 4 1445 413 207 37 0 chr12 112755713 112755795 -8501735 + PB1D9 SINE Alu 25 109 -11 4 1445 272 122 20 0 chr12 112756058 112756107 -8501423 + PB1D9 SINE Alu 2 51 -69 4 1445 264 184 0 20 chr12 112756066 112756116 -8501414 + B4A SINE B4 96 144 -148 4 1445 356 182 106 0 chr12 112757149 112757215 -8500315 + PB1D9 SINE Alu 2 74 -46 4 1445 554 138 0 0 chr12 112757213 112757293 -8500237 - B1_Mur2 SINE Alu -48 101 22 4 1445 268 254 0 118 chr12 112757229 112757305 -8500225 - MT2A LTR ERVL -361 240 174 4 1445 344 323 45 0 chr12 112757452 112757585 -8499945 + RMER15 LTR ERVL 422 560 -15 4 1445 297 0 0 0 chr12 112759040 112759073 -8498457 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1445 317 290 123 67 chr12 112759137 112759416 -8498114 - ORR1E LTR MaLR -116 263 3 4 1445 240 253 109 11 chr12 112759681 112759773 -8497757 - MER112 DNA MER1_type -92 169 69 4 1445 1467 66 0 6 chr12 112759779 112759961 -8497569 + B2_Mm2 SINE B2 1 181 -14 4 1445 955 152 21 0 chr12 112759979 112760124 -8497406 + B1_Mus1 SINE Alu 1 148 0 4 1445 5627 130 146 7 chr12 112760286 112761264 -8496266 - RLTR13D3 LTR ERVK 0 1114 1 4 1445 377 311 67 79 chr12 112761313 112761353 -8496177 + B4 SINE B4 60 220 -71 4 1445 415 214 80 64 chr12 112761330 112761455 -8496075 + MT2B LTR ERVL 152 278 -323 4 1445 814 138 8 0 chr12 112761353 112761476 -8496054 + B1_Mus1 SINE Alu 19 142 -6 4 1445 319 100 33 16 chr12 112761492 112761553 -8495977 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 5 1445 232 307 112 56 chr12 112762037 112762144 -8495386 - PB1D10 SINE Alu 0 117 5 5 1445 3115 153 139 29 chr12 112762456 112763120 -8494410 + RMER19A LTR ERVK 1 737 0 5 1445 376 273 257 82 chr12 112763473 112763788 -8493742 - ORR1D2 LTR MaLR 0 370 1 5 1445 747 222 131 50 chr12 112763846 112764045 -8493485 - B3 SINE B2 0 216 2 5 1445 735 189 21 1 chr12 112764075 112764217 -8493313 + B2_Mm2 SINE B2 1 155 -61 5 1445 648 26 0 0 chr12 112764235 112764313 -8493217 + (CATA)n Simple_repeat Simple_repeat 4 81 0 5 1445 422 246 109 51 chr12 112764320 112764336 -8493194 + ID_B1 SINE B4 80 222 0 5 1445 710 151 134 0 chr12 112764336 112764455 -8493075 + B1_Mus1 SINE Alu 14 148 0 5 1445 1378 93 10 5 chr12 112764459 112764653 -8492877 + B2_Mm2 SINE B2 1 195 0 5 1445 1452 52 5 35 chr12 112765259 112765458 -8492072 - B2_Mm1t SINE B2 0 193 1 5 1445 874 212 0 0 chr12 112765531 112765677 -8491853 + RSINE1 SINE B4 20 165 0 5 1445 274 224 85 19 chr12 112766377 112766474 -8491056 + MIR SINE MIR 61 168 -40 5 1445 407 87 0 127 chr12 112766476 112766555 -8490975 + PB1D9 SINE Alu 1 69 -51 5 1445 251 197 12 106 chr12 112766736 112766821 -8490709 + MLT1B LTR MaLR 153 229 -161 5 1445 712 174 0 0 chr12 112766977 112767086 -8490444 + PB1D9 SINE Alu 1 109 -11 5 1445 270 81 0 0 chr12 112767086 112767123 -8490407 + (TAA)n Simple_repeat Simple_repeat 2 38 0 5 1445 508 242 32 0 chr12 112767146 112767241 -8490289 + RSINE1 SINE B4 31 128 -37 5 1445 291 54 0 0 chr12 112767250 112767287 -8490243 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1445 738 273 159 36 chr12 112767497 112767831 -8489699 + MTE2b LTR MaLR 1 375 -4 5 1445 1148 57 0 28 chr12 112768305 112768450 -8489080 + B1_Mus1 SINE Alu 1 141 -7 5 1445 229 289 100 0 chr12 112768482 112768572 -8488958 - Charlie8 DNA MER1_type -2236 192 94 5 1445 1007 219 29 19 chr12 112768573 112768639 -8488891 - B3 SINE B2 -4 212 146 5 1445 961 134 204 0 chr12 112768639 112768825 -8488705 - URR1B DNA MER1_type -1 224 1 5 1445 1007 219 29 19 chr12 112768825 112768968 -8488562 - B3 SINE B2 -71 145 1 5 1445 26 0 0 0 chr12 112769746 112769772 -8487758 + AT_rich Low_complexity Low_complexity 1 26 0 5 1445 270 314 50 44 chr12 112769780 112769940 -8487590 - RSINE1 SINE B4 -3 162 2 5 1445 1125 76 14 0 chr12 112770025 112770170 -8487360 + B1_Mus2 SINE Alu 1 147 0 5 1445 570 67 0 0 chr12 112770172 112770247 -8487283 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 5 1445 516 262 133 20 chr12 112770253 112770448 -8487082 + B4A SINE B4 1 217 -75 5 1445 835 167 30 0 chr12 112770450 112770582 -8486948 + B1_Mur4 SINE Alu 5 140 -10 5 1445 1178 82 0 0 chr12 112770658 112770805 -8486725 + B1_Mus1 SINE Alu 2 148 0 5 1445 198 0 0 0 chr12 112770805 112770827 -8486703 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1445 887 152 219 16 chr12 112771848 112772035 -8485495 + URR1A DNA MER1_type 1 225 -1 5 1445 822 215 12 6 chr12 112772124 112772288 -8485242 - RCHARR1 DNA MER1_type -183 791 627 5 1445 1286 47 0 0 chr12 112772289 112772437 -8485093 + B1_Mus1 SINE Alu 1 148 0 5 1445 479 281 25 0 chr12 112772469 112772590 -8484940 - RCHARR1 DNA MER1_type -335 639 516 5 1445 918 132 0 0 chr12 112772629 112772758 -8484772 - B1_Mus2 SINE Alu -8 139 11 5 1445 592 229 49 28 chr12 112772758 112772773 -8484757 - ID_B1 SINE B4 -8 216 70 5 1445 741 129 0 75 chr12 112772811 112772945 -8484585 - B1_Mur3 SINE Alu 0 149 26 5 1445 416 272 72 123 chr12 112772813 112773048 -8484482 - B4 SINE B4 -69 223 1 5 1445 467 274 50 17 chr12 112773085 112773204 -8484326 + B1_Mur2 SINE Alu 1 123 -26 5 1445 1148 274 99 19 chr12 112773229 112773594 -8483936 - RCHARR1 DNA MER1_type -580 394 1 5 1445 309 328 7 79 chr12 112774361 112774500 -8483030 + MIRb SINE MIR 36 164 -104 5 1445 31 0 0 0 chr12 112774575 112774606 -8482924 + AT_rich Low_complexity Low_complexity 1 31 0 5 1445 449 240 10 0 chr12 112774616 112774712 -8482818 + B1F1 SINE Alu 1 97 -52 5 1445 416 149 287 0 chr12 112774808 112774895 -8482635 - B1_Mur2 SINE Alu -37 112 1 5 1445 39 80 0 0 chr12 112776456 112776544 -8480986 + GC_rich Low_complexity Low_complexity 1 88 0 5 1445 29 47 0 0 chr12 112776838 112776881 -8480649 + GC_rich Low_complexity Low_complexity 1 43 0 5 1445 333 221 85 19 chr12 112778901 112779007 -8478523 - PB1D9 SINE Alu -7 113 1 5 1445 739 139 16 24 chr12 112779467 112779592 -8477938 - B1_Mus1 SINE Alu -5 143 20 5 1445 547 206 110 20 chr12 112779590 112779774 -8477756 - B3 SINE B2 -9 207 6 5 1445 214 143 40 20 chr12 112779935 112779985 -8477545 + GA-rich Low_complexity Low_complexity 5 55 0 5 1445 441 189 187 8 chr12 112780578 112780701 -8476829 - B1_Mur3 SINE Alu 0 149 5 5 1445 528 16 0 0 chr12 112781924 112781985 -8475545 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1445 320 221 87 6 chr12 112781994 112782084 -8475446 - PB1D9 SINE Alu -27 93 1 5 1445 938 76 130 0 chr12 112782233 112782364 -8475166 - B1_Mus1 SINE Alu 0 148 1 5 1445 313 238 184 19 chr12 112782514 112782617 -8474913 + PB1D9 SINE Alu 1 120 0 5 1445 870 82 90 54 chr12 112785313 112785480 -8472050 - B2_Mm1t SINE B2 -20 173 1 5 1445 245 188 27 55 chr12 112785515 112785588 -8471942 - LTR87 LTR ERVL? -2 622 552 5 1445 965 115 50 28 chr12 112786106 112786258 -8471272 - B2_Mm2 SINE B2 -4 191 36 5 1445 1162 118 37 11 chr12 112786258 112786446 -8471084 - B2_Mm1a SINE B2 0 193 1 5 1445 965 115 50 28 chr12 112786446 112786472 -8471058 - B2_Mm2 SINE B2 -160 35 9 5 1445 289 229 131 2 chr12 112786981 112787078 -8470452 + B3 SINE B2 56 158 -37 5 1445 296 283 9 86 chr12 112787127 112787243 -8470287 + B1_Mm SINE Alu 41 147 0 5 1445 1067 126 98 0 chr12 112787247 112787421 -8470109 + B2_Mm2 SINE B2 1 191 -4 5 1445 417 231 80 0 chr12 112787426 112787551 -8469979 + B3 SINE B2 41 189 -27 5 1445 417 240 137 15 chr12 112787563 112787694 -8469836 + B1_Mus2 SINE Alu 1 147 0 5 1445 797 81 181 24 chr12 112787722 112787849 -8469681 + B1_Mm SINE Alu 1 147 0 5 1445 392 239 11 0 chr12 112787882 112787970 -8469560 - B3A SINE B2 -100 98 10 5 1445 1667 26 5 0 chr12 112787979 112788171 -8469359 - B2_Mm1a SINE B2 0 193 1 5 1445 206 140 0 91 chr12 112788324 112788379 -8469151 + A-rich Low_complexity Low_complexity 5 54 0 5 1445 884 288 113 19 chr12 112788381 112788658 -8468872 - MTD LTR MaLR -33 386 94 5 1445 1132 74 0 7 chr12 112788658 112788807 -8468723 - B1_Mus1 SINE Alu 0 148 1 5 1445 884 288 113 19 chr12 112788807 112788848 -8468682 - MTD LTR MaLR -326 93 38 5 1445 186 43 0 0 chr12 112789615 112789638 -8467892 + (TCC)n Simple_repeat Simple_repeat 2 24 0 5 1445 590 124 27 0 chr12 112789680 112789792 -8467738 - B3 SINE B2 -76 119 1 5 1445 311 308 77 0 chr12 112789815 112789906 -8467624 - RSINE1 SINE B4 -39 126 29 5 1445 21 36 0 0 chr12 112790056 112790084 -8467446 + AT_rich Low_complexity Low_complexity 1 28 0 5 1445 855 171 14 14 chr12 112790095 112790243 -8467287 + B1_Mur2 SINE Alu 2 149 0 5 1445 341 252 19 66 chr12 112790256 112790269 -8467261 + MT2B LTR ERVL 155 255 -346 5 1445 475 204 43 0 chr12 112790269 112790362 -8467168 + B1_Mur2 SINE Alu 6 102 -47 5 1445 210 71 0 0 chr12 112790546 112790574 -8466956 + (CGGGA)n Simple_repeat Simple_repeat 2 29 0 5 1445 624 248 109 66 chr12 112790644 112791038 -8466492 - RMER13A LTR ERVK -465 443 2 5 1445 291 214 68 41 chr12 112791038 112791104 -8466426 + B1_Mur1 SINE Alu 82 149 0 5 1445 22 0 0 0 chr12 112791193 112791215 -8466315 + AT_rich Low_complexity Low_complexity 1 22 0 5 1445 951 138 7 14 chr12 112791300 112791447 -8466083 - B1_Mur4 SINE Alu -1 149 4 5 1445 564 208 66 8 chr12 112791494 112791615 -8465915 + MTEa LTR MaLR 1 128 -251 5 1445 213 159 0 0 chr12 112791637 112791681 -8465849 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1445 884 155 7 20 chr12 112791724 112791875 -8465655 + B1_Mur2 SINE Alu 1 149 0 5 1445 653 180 14 50 chr12 112791893 112792033 -8465497 + B1_Mus1 SINE Alu 1 135 -13 5 1445 1349 67 32 27 chr12 112792088 112792273 -8465257 + B2_Mm2 SINE B2 3 188 -7 5 1445 262 77 0 0 chr12 112792273 112792312 -8465218 + B2_Mm1t SINE B2 139 177 -16 5 1445 449 278 24 6 chr12 112792803 112792973 -8464557 + (TG)n Simple_repeat Simple_repeat 2 174 0 5 1445 441 0 0 0 chr12 112792973 112793022 -8464508 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1445 269 236 8 159 chr12 112793026 112793099 -8464431 - B4A SINE B4 0 292 230 5 1445 1242 121 21 10 chr12 112793099 112793292 -8464238 - B2_Mm2 SINE B2 0 195 1 5 1445 269 236 8 159 chr12 112793292 112793303 -8464227 - B4A SINE B4 -63 229 223 5 1445 997 89 30 0 chr12 112793303 112793471 -8464059 + (TC)n Simple_repeat Simple_repeat 1 173 0 5 1445 324 0 0 0 chr12 112793472 112793508 -8464022 + (TCCCC)n Simple_repeat Simple_repeat 5 40 0 5 1445 675 0 0 0 chr12 112793508 112793583 -8463947 + (TTTTC)n Simple_repeat Simple_repeat 1 75 0 5 1445 412 303 481 40 chr12 112793583 112793731 -8463799 - B4A SINE B4 -70 222 5 5 1445 279 234 12 94 chr12 112793726 112793811 -8463719 - B1F SINE Alu -63 86 9 5 1445 231 264 0 19 chr12 112794137 112794154 -8463376 + ORR1B1-int LTR MaLR 634 648 -861 5 1445 699 92 13 0 chr12 112794154 112794263 -8463267 + B1_Mm SINE Alu 2 120 0 5 1445 213 94 0 0 chr12 112794349 112794381 -8463149 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1445 988 75 0 0 chr12 112794381 112794515 -8463015 - B1_Mus2 SINE Alu 0 147 14 5 1445 234 191 0 0 chr12 112794560 112794607 -8462923 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 6 1445 235 326 20 40 chr12 112794803 112794902 -8462628 - MLT1H2 LTR MaLR -305 184 88 6 1445 627 151 47 0 chr12 112795123 112795229 -8462301 - B1_Mur4 SINE Alu -21 129 19 6 1445 415 212 351 0 chr12 112795760 112795911 -8461619 - B3 SINE B2 -12 204 1 6 1445 192 27 26 51 chr12 112796217 112796256 -8461274 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 6 1445 469 263 72 14 chr12 112796257 112796396 -8461134 - B1F SINE Alu 0 149 3 6 1445 492 143 0 0 chr12 112796459 112796543 -8460987 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 6 1445 995 72 0 7 chr12 112796553 112796693 -8460837 - B1_Mus2 SINE Alu -3 144 6 6 1445 586 170 49 67 chr12 112796693 112796709 -8460821 - ID_B1 SINE B4 0 178 64 6 1445 447 19 0 0 chr12 112796726 112796778 -8460752 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1445 219 36 0 0 chr12 112796778 112796805 -8460725 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 6 1445 343 306 0 30 chr12 112796805 112796906 -8460624 - ID_B1 SINE B4 -18 206 109 6 1445 838 248 46 50 chr12 112797509 112797768 -8459762 + B4A SINE B4 2 259 -33 6 1445 360 295 62 8 chr12 112797974 112798104 -8459426 - L1M4c LINE L1 -6218 166 30 6 1445 243 246 250 16 chr12 112798242 112798370 -8459160 + MLT1D LTR MaLR 34 191 -314 6 1445 287 222 100 55 chr12 112798380 112798490 -8459040 - PB1D10 SINE Alu -20 129 15 6 1445 459 0 0 0 chr12 112798490 112798541 -8458989 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1445 354 322 27 22 chr12 112798760 112798944 -8458586 + L1M4 LINE L1 5540 5724 -454 6 1445 358 268 23 45 chr12 112799026 112799202 -8458328 + (CTGTG)n Simple_repeat Simple_repeat 1 172 0 6 1445 236 284 9 44 chr12 112799591 112799705 -8457825 + (CTGTG)n Simple_repeat Simple_repeat 3 112 0 6 1445 1388 75 32 0 chr12 112799749 112799935 -8457595 - B2_Mm2 SINE B2 -3 192 1 6 1445 288 130 0 0 chr12 112799957 112800003 -8457527 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 6 1445 499 182 131 0 chr12 112800004 112800103 -8457427 - B1_Mus1 SINE Alu -15 133 22 6 1445 781 175 99 6 chr12 112800114 112800275 -8457255 + B2_Mm2 SINE B2 1 176 -19 6 1445 368 321 35 21 chr12 112800342 112800485 -8457045 - MTEa LTR MaLR -234 145 1 6 1445 281 145 16 0 chr12 112800530 112800592 -8456938 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1445 632 181 26 98 chr12 112800595 112800748 -8456782 - B1_Mur1 SINE Alu -6 143 2 6 1445 478 199 430 0 chr12 112800769 112800920 -8456610 - B3 SINE B2 0 216 1 6 1445 258 242 93 120 chr12 112801219 112801327 -8456203 - MTEa LTR MaLR -255 124 20 6 1445 1424 64 0 60 chr12 112801666 112801866 -8455664 + B2_Mm2 SINE B2 1 188 -7 6 1445 997 31 0 15 chr12 112801908 112802039 -8455491 + (TTTTC)n Simple_repeat Simple_repeat 2 130 0 6 1445 1147 58 0 0 chr12 112802041 112802178 -8455352 - B1_Mm SINE Alu -6 141 5 6 1445 325 252 71 64 chr12 112802258 112802279 -8455251 + B4 SINE B4 67 88 -204 6 1445 497 216 16 49 chr12 112802279 112802401 -8455129 + B1_Mur2 SINE Alu 3 120 -29 6 1445 291 237 177 82 chr12 112802588 112802735 -8454795 + B4A SINE B4 5 165 -127 6 1445 245 204 19 0 chr12 112802760 112802814 -8454716 + RSINE1 SINE B4 80 134 -31 6 1445 217 224 17 0 chr12 112802862 112802903 -8454627 + polypyrimidine Low_complexity Low_complexity 22 62 0 6 1445 1573 52 0 30 chr12 112802903 112803102 -8454428 - B2_Mm1t SINE B2 0 193 1 6 1445 217 224 17 0 chr12 112803102 112803118 -8454412 + polypyrimidine Low_complexity Low_complexity 5 21 0 6 1445 613 188 84 23 chr12 112803322 112803453 -8454077 - B1_Mur4 SINE Alu -11 139 1 6 1445 201 167 0 0 chr12 112803529 112803583 -8453947 + A-rich Low_complexity Low_complexity 1 54 0 6 1445 349 181 80 71 chr12 112803595 112803708 -8453822 + PB1D9 SINE Alu 1 114 -6 6 1445 955 186 66 15 chr12 112803720 112803917 -8453613 + B3 SINE B2 5 211 -5 6 1445 941 71 85 0 chr12 112804089 112804230 -8453300 + B2_Mm2 SINE B2 2 154 -41 6 1445 185 0 0 39 chr12 112804231 112804257 -8453273 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 6 1445 204 97 0 0 chr12 112804271 112804302 -8453228 + (TTA)n Simple_repeat Simple_repeat 2 32 0 6 1445 562 228 31 183 chr12 112804317 112804540 -8452990 + ORR1C2 LTR MaLR 137 329 -55 6 1445 1204 41 0 0 chr12 112804540 112804687 -8452843 - B1_Mm SINE Alu 0 147 1 6 1445 562 228 31 183 chr12 112804687 112804753 -8452777 + ORR1C2 LTR MaLR 330 382 -2 6 1445 725 87 147 23 chr12 112804754 112804883 -8452647 + B1_Mm SINE Alu 3 147 0 6 1445 482 240 116 0 chr12 112804942 112805071 -8452459 - B3 SINE B2 -67 149 6 6 1445 297 0 0 0 chr12 112805096 112805129 -8452401 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1445 587 192 8 31 chr12 112805130 112805259 -8452271 - B1_Mus2 SINE Alu -19 128 3 6 1445 624 301 95 52 chr12 112805474 112805779 -8451751 + MTE2a LTR MaLR 25 342 -37 6 1445 600 148 8 34 chr12 112805792 112805911 -8451619 - B1_Mus2 SINE Alu 0 147 32 6 1445 255 157 69 28 chr12 112805853 112805925 -8451605 - 4.5SRNA scRNA scRNA -8 86 12 6 1445 630 211 0 40 chr12 112806143 112806291 -8451239 - B1_Mur1 SINE Alu -3 146 5 6 1445 222 119 0 106 chr12 112806308 112806338 -8451192 + T-rich Low_complexity Low_complexity 34 60 0 6 1445 1666 32 0 0 chr12 112806338 112806525 -8451005 - B2_Mm1a SINE B2 -5 188 2 6 1445 222 119 0 106 chr12 112806525 112806541 -8450989 + T-rich Low_complexity Low_complexity 18 33 0 6 1445 1109 82 14 0 chr12 112806541 112806687 -8450843 - B1_Mus1 SINE Alu 0 148 1 6 1445 222 119 0 106 chr12 112806687 112806705 -8450825 + T-rich Low_complexity Low_complexity 2 17 0 6 1445 1186 48 14 0 chr12 112806846 112806991 -8450539 + B1_Mus1 SINE Alu 2 148 0 6 1445 619 264 0 23 chr12 112807417 112807549 -8449981 - RSINE1 SINE B4 -35 130 2 6 1445 652 171 131 8 chr12 112807756 112807886 -8449644 - B1_Mus1 SINE Alu -1 147 2 6 1445 528 317 68 34 chr12 112807920 112808126 -8449404 - B3A SINE B2 -3 213 1 6 1445 997 229 187 54 chr12 112808238 112808650 -8448880 - RMER4B LTR ERVK -66 519 40 6 1445 1266 27 0 0 chr12 112808650 112808796 -8448734 - B1_Mm SINE Alu 0 147 2 6 1445 997 229 187 54 chr12 112808796 112808827 -8448703 - RMER4B LTR ERVK -546 39 17 6 1445 548 137 19 47 chr12 112808835 112808942 -8448588 + B1_Mur1 SINE Alu 44 147 -2 6 1445 1048 66 44 0 chr12 112808951 112809088 -8448442 + B1_Mm SINE Alu 5 147 0 6 1445 234 0 0 0 chr12 112809088 112809114 -8448416 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 6 1445 538 253 51 19 chr12 112809149 112809306 -8448224 - RSINE1 SINE B4 0 165 4 6 1445 893 164 0 20 chr12 112809432 112809581 -8447949 + B1_Mus1 SINE Alu 3 148 0 6 1445 768 219 49 0 chr12 112809631 112809814 -8447716 - B3 SINE B2 -24 192 1 6 1445 398 207 69 0 chr12 112809826 112809908 -8447622 - B1F2 SINE Alu -26 123 36 6 1445 727 277 19 0 chr12 112809908 112810114 -8447416 + B4 SINE B4 4 213 -79 6 1445 298 274 79 16 chr12 112810106 112810232 -8447298 - B4A SINE B4 -157 135 2 6 1445 334 192 83 46 chr12 112810314 112810423 -8447107 + PB1D10 SINE Alu 3 115 -2 6 1445 233 263 0 10 chr12 112811959 112812059 -8445471 + GA-rich Low_complexity Low_complexity 2 100 0 6 1445 25 31 0 0 chr12 112813101 112813133 -8444397 + GC_rich Low_complexity Low_complexity 1 32 0 6 1445 223 333 27 0 chr12 112814436 112814511 -8443019 + CT-rich Low_complexity Low_complexity 1 77 0 6 1445 629 90 9 26 chr12 112814810 112814924 -8442606 + (TCTA)n Simple_repeat Simple_repeat 1 112 0 6 1445 493 149 176 9 chr12 112814934 112815042 -8442488 - B1_Mur2 SINE Alu -23 126 1 6 1445 227 219 31 0 chr12 112815302 112815366 -8442164 + CT-rich Low_complexity Low_complexity 2 67 0 6 1445 1159 82 0 0 chr12 112815366 112815513 -8442017 - B1_Mus1 SINE Alu 0 148 2 6 1445 1185 69 0 0 chr12 112815555 112815700 -8441830 - B1_Mm SINE Alu -1 146 2 6 1445 761 150 15 8 chr12 112815703 112815837 -8441693 - B1_Mus1 SINE Alu 0 148 14 6 1445 1217 98 35 0 chr12 112815839 112816012 -8441518 + B2_Mm2 SINE B2 2 180 -15 6 1445 540 0 0 0 chr12 112816014 112816074 -8441456 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 1445 769 219 0 0 chr12 112816135 112816281 -8441249 - B1_Mus1 SINE Alu 0 148 3 6 1445 1229 48 0 0 chr12 112816323 112816470 -8441060 - B1_Mus1 SINE Alu 0 148 2 6 1445 321 196 81 57 chr12 112816470 112816588 -8440942 - L1M5 LINE L1 -585 5859 5735 6 1445 315 239 0 0 chr12 112816609 112816697 -8440833 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 1445 417 208 13 0 chr12 112816703 112816780 -8440750 - B1_Mus1 SINE Alu -58 90 13 6 1445 287 308 76 11 chr12 112816704 112816796 -8440734 - B4 SINE B4 -113 179 82 6 1445 403 83 348 36 chr12 112816809 112816921 -8440609 - B2_Mm2 SINE B2 -2 193 47 6 1445 1136 90 12 0 chr12 112816976 112817143 -8440387 - B2_Mm1t SINE B2 -22 171 3 6 1445 411 213 92 30 chr12 112817318 112817449 -8440081 - B3 SINE B2 -76 140 2 6 1445 1477 68 10 16 chr12 112817547 112817741 -8439789 - B2_Mm1a SINE B2 0 193 1 6 1445 342 296 43 38 chr12 112817890 112818076 -8439454 - CYRA11_Mm Unknown Y-chromosome -259 358 172 6 1445 854 127 7 0 chr12 112817935 112818077 -8439453 + URR1B DNA MER1_type 83 225 0 6 1445 592 209 9 0 chr12 112818084 112818194 -8439336 - B1_Mur1 SINE Alu -38 111 1 7 1445 323 178 57 0 chr12 112818679 112818757 -8438773 - B1_Mur2 SINE Alu -7 142 61 7 1445 696 224 161 6 chr12 112818890 112819070 -8438460 + B3 SINE B2 1 208 -8 7 1445 716 220 48 27 chr12 112819377 112819564 -8437966 - B3 SINE B2 -1 215 25 7 1445 970 168 76 9 chr12 112819568 112819778 -8437752 + URR1A DNA MER1_type 3 226 0 7 1445 219 256 11 137 chr12 112819872 112819967 -8437563 + PB1D9 SINE Alu 26 108 -12 7 1445 957 198 0 81 chr12 112820007 112820216 -8437314 + B3 SINE B2 25 216 0 7 1445 763 217 37 0 chr12 112820448 112820609 -8436921 + B3 SINE B2 44 210 -6 7 1445 255 323 50 0 chr12 112820637 112820736 -8436794 + B1F SINE Alu 33 136 -13 7 1445 842 179 14 20 chr12 112821197 112821345 -8436185 - B1_Mur3 SINE Alu 0 149 3 7 1445 385 158 7 195 chr12 112821385 112821534 -8435996 - B1_Mur4 SINE Alu 0 150 30 7 1445 836 148 56 0 chr12 112822154 112822296 -8435234 - B1_Mur4 SINE Alu 0 150 1 7 1445 217 246 126 0 chr12 112822388 112822463 -8435067 + MIR SINE MIR 75 156 -106 7 1445 1073 128 154 0 chr12 112822617 112822812 -8434718 - URR1B DNA MER1_type 0 225 1 7 1445 684 254 35 0 chr12 112823302 112823444 -8434086 - B1_Mur2 SINE Alu 0 149 3 7 1445 693 102 195 0 chr12 112823491 112823609 -8433921 - B1_Mur4 SINE Alu -8 142 2 7 1445 191 286 94 12 chr12 112823757 112823842 -8433688 + MIRb SINE MIR 133 224 -44 7 1445 223 122 20 20 chr12 112823956 112824006 -8433524 + (TTA)n Simple_repeat Simple_repeat 2 51 0 7 1445 23 0 0 0 chr12 112824006 112824029 -8433501 + AT_rich Low_complexity Low_complexity 1 23 0 7 1445 1192 74 0 0 chr12 112824029 112824177 -8433353 - B1_Mus1 SINE Alu 0 148 1 7 1445 289 264 0 0 chr12 112824202 112824255 -8433275 - ID4_ SINE ID -2 81 29 7 1445 1084 75 181 0 chr12 112824399 112824559 -8432971 + B2_Mm2 SINE B2 3 191 -4 7 1445 1159 139 27 5 chr12 112824564 112824752 -8432778 + B2_Mm2 SINE B2 1 192 -3 7 1445 521 168 56 84 chr12 112824887 112825030 -8432500 + B1_Mur1 SINE Alu 5 143 -6 7 1445 325 234 85 0 chr12 112825497 112825591 -8431939 - B1F1 SINE Alu -39 110 9 7 1445 238 281 73 0 chr12 112825508 112825604 -8431926 - ID_B1 SINE B4 -47 177 75 7 1445 328 212 93 12 chr12 112825815 112825901 -8431629 - MER20 DNA MER1_type -111 108 16 7 1445 582 194 31 8 chr12 112826070 112826200 -8431330 + B1_Mus2 SINE Alu 15 147 0 7 1445 236 167 55 18 chr12 112826253 112826265 -8431265 - ID_B1 SINE B4 -94 130 119 7 1445 694 160 92 0 chr12 112826265 112826396 -8431134 - B1_Mur2 SINE Alu -6 143 1 7 1445 236 167 55 18 chr12 112826396 112826438 -8431092 - ID_B1 SINE B4 -106 118 74 7 1445 227 91 0 0 chr12 112826435 112826468 -8431062 - B1_Mus2 SINE Alu -114 33 1 7 1445 362 250 0 0 chr12 112826657 112826721 -8430809 - ID4_ SINE ID -18 65 2 7 1445 1043 82 0 0 chr12 112826768 112826902 -8430628 - B1_Mus1 SINE Alu -13 135 2 7 1445 36 23 0 0 chr12 112827036 112827079 -8430451 + AT_rich Low_complexity Low_complexity 1 43 0 7 1445 231 349 19 19 chr12 112827091 112827199 -8430331 + PB1D10 SINE Alu 2 109 -8 7 1445 530 289 39 7 chr12 112827631 112827784 -8429746 - RSINE1 SINE B4 -4 161 4 7 1445 454 298 15 8 chr12 112827796 112827928 -8429602 - B4 SINE B4 -134 158 26 7 1445 269 298 0 45 chr12 112827905 112827942 -8429588 - B4A SINE B4 -124 168 86 7 1445 287 180 0 0 chr12 112827942 112827992 -8429538 - B1_Mus2 SINE Alu -97 50 1 7 1445 287 271 33 123 chr12 112828239 112828361 -8429169 + B3 SINE B2 81 191 -25 7 1445 279 284 56 11 chr12 112828422 112828511 -8429019 + B1F1 SINE Alu 7 99 -50 7 1445 342 212 165 0 chr12 112828588 112828673 -8428857 + ID_B1 SINE B4 121 219 -5 7 1445 563 138 190 0 chr12 112828804 112828920 -8428610 - B1_Mur2 SINE Alu 0 149 12 7 1445 249 195 48 83 chr12 112828920 112829004 -8428526 - L1M5 LINE L1 -2157 3989 3909 7 1445 852 164 0 0 chr12 112829037 112829171 -8428359 - B1_Mus2 SINE Alu -13 134 1 7 1445 357 218 25 13 chr12 112829406 112829485 -8428045 + B3 SINE B2 128 207 -9 7 1445 874 240 62 0 chr12 112829657 112829849 -8427681 - B3 SINE B2 -11 205 2 7 1445 457 271 140 86 chr12 112830157 112830579 -8426951 - Tigger5 DNA MER2_type 0 2406 2169 7 1445 654 208 30 15 chr12 112831750 112831882 -8425648 + B1_Mur3 SINE Alu 5 138 -11 7 1445 207 0 0 0 chr12 112831882 112831905 -8425625 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1445 583 193 26 0 chr12 112832133 112832247 -8425283 - B1_Mur1 SINE Alu -31 118 2 7 1445 758 142 13 78 chr12 112832510 112832663 -8424867 - B1_Mus2 SINE Alu 0 147 5 7 1445 662 116 0 0 chr12 112833477 112833572 -8423958 + B1_Mus1 SINE Alu 11 105 -43 7 1445 261 239 51 61 chr12 112833733 112833819 -8423711 - MLT1A1 LTR MaLR 0 408 324 7 1445 360 238 12 0 chr12 112833819 112833899 -8423631 + B3 SINE B2 1 81 -135 7 1445 214 56 111 0 chr12 112834031 112834067 -8423463 + B1_Mus2 SINE Alu 85 124 -23 7 1445 204 122 0 0 chr12 112834092 112834133 -8423397 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 1445 216 264 75 0 chr12 112834603 112834656 -8422874 - ID4_ SINE ID -4 79 23 7 1445 775 160 0 68 chr12 112834780 112834941 -8422589 - B1_Mur4 SINE Alu 0 150 1 7 1445 495 244 25 34 chr12 112835187 112835306 -8422224 + PB1D9 SINE Alu 1 118 -2 7 1445 677 243 63 26 chr12 112835439 112835629 -8421901 - B3A SINE B2 0 198 2 7 1445 597 251 5 89 chr12 112835629 112835843 -8421687 - B3A SINE B2 -1 197 2 7 1445 667 153 24 8 chr12 112835967 112836092 -8421438 + B1_Mus2 SINE Alu 2 128 -19 7 1445 201 39 0 0 chr12 112836165 112836191 -8421339 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 7 1445 265 73 0 0 chr12 112836418 112836459 -8421071 - B1_Mur4 SINE Alu 0 150 110 7 1445 248 168 53 80 chr12 112836551 112836646 -8420884 + PB1D10 SINE Alu 37 122 -27 7 1445 290 158 13 34 chr12 112836764 112836831 -8420699 - B2_Mm2 SINE B2 -82 116 46 7 1445 1300 97 11 0 chr12 112836877 112837053 -8420477 - B2_Mm1t SINE B2 -14 179 2 7 1445 296 384 30 30 chr12 112837317 112837481 -8420049 - B3A SINE B2 -16 182 19 7 1445 1350 53 21 0 chr12 112837556 112837744 -8419786 + B2_Mm2 SINE B2 2 193 -2 7 1445 827 115 39 0 chr12 112838304 112838434 -8419096 + B1_Mur4 SINE Alu 5 139 -11 7 1445 671 209 39 39 chr12 112838684 112838838 -8418692 + B3 SINE B2 2 155 -61 7 1445 1079 64 43 0 chr12 112838972 112839112 -8418418 - B1_Mus2 SINE Alu 0 147 2 7 1445 1166 154 245 34 chr12 112839200 112839555 -8417975 - RMER15 LTR ERVL -2 573 144 7 1445 195 125 0 0 chr12 112839566 112839606 -8417924 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 7 1445 1158 68 0 20 chr12 112839607 112839758 -8417772 - B1_Mus1 SINE Alu 0 148 1 7 1445 258 130 22 0 chr12 112839760 112839806 -8417724 - B1_Mus2 SINE Alu 0 147 101 7 1445 451 129 0 23 chr12 112839812 112839892 -8417638 - RMER15 LTR ERVL -421 154 76 7 1445 234 0 0 0 chr12 112839892 112839918 -8417612 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1445 773 59 5 22 chr12 112839922 112840052 -8417478 - B1_Mus2 SINE Alu -7 140 20 7 1445 308 143 18 18 chr12 112840020 112840077 -8417453 - RMER15 LTR ERVL -507 68 12 7 1445 1272 95 5 40 chr12 112840228 112840426 -8417104 + B2_Mm1t SINE B2 1 191 -2 7 1445 416 254 148 74 chr12 112840662 112840811 -8416719 + RSINE1 SINE B4 4 163 -2 7 1445 684 127 0 0 chr12 112840826 112840936 -8416594 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 7 1445 760 168 35 0 chr12 112840938 112841081 -8416449 - B1_Mur3 SINE Alu 0 149 2 7 1445 540 193 193 0 chr12 112841224 112841333 -8416197 + B1_Mur2 SINE Alu 13 142 -7 7 1445 408 211 154 47 chr12 112841393 112841562 -8415968 + Charlie1a DNA MER1_type 1265 1451 -4 7 1445 1133 69 14 0 chr12 112841562 112841706 -8415824 + B1_Mus2 SINE Alu 2 147 0 7 1445 256 189 0 54 chr12 112842900 112842956 -8414574 + PB1D9 SINE Alu 2 54 -66 7 1445 657 224 56 0 chr12 112843279 112843440 -8414090 - Lx9 LINE L1 -307 7337 7168 7 1445 332 286 35 18 chr12 112844053 112844167 -8413363 - PB1D7 SINE Alu 0 120 5 7 1445 1278 93 11 16 chr12 112844336 112844521 -8413009 + B2_Mm1t SINE B2 1 184 -9 7 1445 1219 41 0 7 chr12 112844935 112845084 -8412446 + B1_Mus1 SINE Alu 1 148 0 7 1445 1221 42 0 0 chr12 112845118 112845260 -8412270 + B1_Mm SINE Alu 1 142 -5 7 1445 1516 83 0 0 chr12 112845277 112845470 -8412060 + B2_Mm1t SINE B2 1 193 0 7 1445 840 162 0 33 chr12 112845483 112845636 -8411894 + B1_Mur3 SINE Alu 2 149 0 7 1445 568 247 91 91 chr12 112845656 112845843 -8411687 + B4 SINE B4 89 275 -17 7 1445 729 184 0 0 chr12 112845858 112845994 -8411536 - B1_Mus2 SINE Alu 0 147 12 7 1445 335 271 297 5 chr12 112846243 112846465 -8411065 + MER74A LTR ERVL 82 424 -198 7 1445 462 203 121 74 chr12 112846652 112846801 -8410729 - RMER12 LTR ERVK -127 1195 1040 7 1445 844 192 20 0 chr12 112846981 112847127 -8410403 - B1_Mur4 SINE Alu -1 149 1 7 1445 560 249 124 42 chr12 112847302 112847495 -8410035 - B3 SINE B2 0 216 8 7 1445 246 132 0 0 chr12 112847495 112847548 -8409982 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1445 1181 88 0 0 chr12 112847548 112847696 -8409834 - B1_Mus1 SINE Alu 0 148 1 8 1445 1226 87 55 0 chr12 112847697 112847880 -8409650 - B2_Mm1t SINE B2 0 193 1 8 1445 898 100 260 0 chr12 112847964 112848114 -8409416 - B2_Mm2 SINE B2 -5 190 2 8 1445 624 267 106 0 chr12 112848607 112848787 -8408743 + B3 SINE B2 3 201 -15 8 1445 1075 77 13 0 chr12 112848787 112848943 -8408587 + B2_Mm1a SINE B2 3 160 -33 8 1445 270 0 0 0 chr12 112848944 112848974 -8408556 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 8 1445 27 0 0 0 chr12 112849324 112849351 -8408179 + AT_rich Low_complexity Low_complexity 1 27 0 8 1445 487 237 58 17 chr12 112849353 112849473 -8408057 - RSINE1 SINE B4 -29 136 12 8 1445 394 212 12 0 chr12 112849478 112849558 -8407972 + B1_Mur2 SINE Alu 13 93 -56 8 1445 404 321 82 0 chr12 112849844 112849978 -8407552 + RSINE1 SINE B4 3 147 -18 8 1445 632 203 8 0 chr12 112850063 112850186 -8407344 + B1_Mus2 SINE Alu 3 126 -21 8 1445 399 244 108 8 chr12 112850186 112850306 -8407224 + B1_Mur1 SINE Alu 5 136 -13 8 1445 884 224 66 5 chr12 112850341 112850538 -8406992 + B3 SINE B2 1 209 -7 8 1445 200 34 0 33 chr12 112850685 112850715 -8406815 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 1445 701 187 0 22 chr12 112850718 112850855 -8406675 - B1_Mur3 SINE Alu -13 136 3 8 1445 680 233 0 29 chr12 112850978 112851115 -8406415 + B1_Mur1 SINE Alu 5 137 -12 8 1445 781 105 81 0 chr12 112851609 112851733 -8405797 + B1_Mus2 SINE Alu 1 134 -13 8 1445 468 254 65 43 chr12 112851975 112852160 -8405370 - RLTR42-int LTR ERVK -4122 1400 1212 8 1445 367 250 33 0 chr12 112852310 112852402 -8405128 + B3 SINE B2 9 103 -113 8 1446 1131 68 7 0 chr12 112853716 112853863 -8403667 + B1_Mus1 SINE Alu 1 148 0 8 1446 21 0 0 0 chr12 112853965 112853986 -8403544 + AT_rich Low_complexity Low_complexity 1 21 0 8 1446 603 95 74 0 chr12 112854352 112854447 -8403083 - B1_Mur3 SINE Alu -1 148 47 8 1446 269 171 52 91 chr12 112854379 112854456 -8403074 - MT2B LTR ERVL -337 264 191 8 1446 1684 27 0 0 chr12 112854686 112854874 -8402656 + B2_Mm1a SINE B2 2 189 -4 8 1446 375 157 0 0 chr12 112854960 112855049 -8402481 + T-rich Low_complexity Low_complexity 1 89 0 8 1446 238 108 0 0 chr12 112855070 112855107 -8402423 - PB1D9 SINE Alu -62 58 22 8 1446 231 119 0 45 chr12 112855074 112855118 -8402412 - B1F2 SINE Alu -95 54 13 8 1446 370 169 0 94 chr12 112855655 112855740 -8401790 - B1_Mur2 SINE Alu 0 149 73 8 1446 189 0 0 0 chr12 112855744 112855765 -8401765 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1446 331 258 0 82 chr12 112855775 112855872 -8401658 + BC1_Mm scRNA scRNA 3 91 -61 8 1446 304 295 82 0 chr12 112855880 112856002 -8401528 + B1F SINE Alu 10 141 -8 8 1446 371 362 71 13 chr12 112856807 112856961 -8400569 - RSINE1 SINE B4 -2 163 1 8 1446 855 185 0 0 chr12 112857098 112857244 -8400286 - B1_Mus1 SINE Alu 0 148 3 8 1446 362 276 16 65 chr12 112857247 112857371 -8400159 + B3 SINE B2 96 213 -3 8 1446 749 162 275 0 chr12 112857388 112857555 -8399975 + B3 SINE B2 4 216 0 8 1446 467 299 60 38 chr12 112857678 112857862 -8399668 - B3 SINE B2 -3 213 26 8 1446 392 270 17 43 chr12 112858041 112858157 -8399373 + B1_Mur2 SINE Alu 4 116 -33 8 1446 687 84 0 0 chr12 112858512 112858607 -8398923 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 8 1446 667 232 7 0 chr12 112858612 112858750 -8398780 - B1_Mur3 SINE Alu -9 140 2 8 1446 479 336 25 46 chr12 112859270 112859554 -8397976 - B4A SINE B4 -14 278 1 8 1446 253 224 0 0 chr12 112859597 112859646 -8397884 - ID_B1 SINE B4 -14 210 162 8 1446 1618 220 52 3 chr12 112859657 112860003 -8397527 - ORR1D2 LTR MaLR -7 363 1 8 1446 277 266 37 25 chr12 112860003 112860084 -8397446 - ID_B1 SINE B4 -56 168 87 8 1446 201 176 0 0 chr12 112860435 112860469 -8397061 + (TATG)n Simple_repeat Simple_repeat 2 35 0 8 1446 442 242 0 0 chr12 112860863 112860958 -8396572 - B1_Mus2 SINE Alu -52 95 1 8 1446 301 233 21 75 chr12 112860876 112860969 -8396561 - MT2B LTR ERVL -362 239 152 8 1446 31 21 0 20 chr12 112861120 112861140 -8396390 + AT_rich Low_complexity Low_complexity 1 20 0 8 1446 648 258 121 21 chr12 112861140 112861330 -8396200 + B3 SINE B2 2 210 -6 8 1446 31 21 0 20 chr12 112861330 112861358 -8396172 + AT_rich Low_complexity Low_complexity 1 28 0 8 1446 274 269 30 0 chr12 112861600 112861667 -8395863 + B4A SINE B4 216 284 -8 8 1446 207 0 0 0 chr12 112861669 112861692 -8395838 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 8 1446 21 0 0 0 chr12 112861835 112861856 -8395674 + AT_rich Low_complexity Low_complexity 1 21 0 8 1446 493 311 12 86 chr12 112861856 112862018 -8395512 - RSINE1 SINE B4 -5 160 11 8 1446 575 298 48 14 chr12 112862263 112862471 -8395059 + ID_B1 SINE B4 3 217 -7 8 1446 404 225 164 16 chr12 112862485 112862607 -8394923 + B1_Mur1 SINE Alu 2 141 -8 8 1446 555 232 28 188 chr12 112863705 112863960 -8393570 - B3 SINE B2 0 216 3 8 1446 1055 65 65 0 chr12 112863993 112864131 -8393399 + B1_Mm SINE Alu 1 147 0 8 1446 1259 73 5 53 chr12 112864160 112864349 -8393181 + B2_Mm2 SINE B2 2 181 -14 8 1446 355 281 8 50 chr12 112864379 112864499 -8393031 + PB1D9 SINE Alu 6 120 0 8 1446 213 238 24 59 chr12 112864816 112864901 -8392629 + L2c LINE L2 3267 3348 -39 8 1446 231 214 0 0 chr12 112866142 112866184 -8391346 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1446 227 279 0 62 chr12 112866556 112866621 -8390909 + B1F2 SINE Alu 23 83 -66 8 1446 237 83 0 0 chr12 112867070 112867106 -8390424 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1446 374 248 162 0 chr12 112867651 112867768 -8389762 - B3 SINE B2 -4 212 77 8 1446 505 179 18 70 chr12 112867769 112867883 -8389647 - B1_Mur3 SINE Alu -20 129 22 8 1446 292 336 13 67 chr12 112867923 112867940 -8389590 + B1_Mus1 SINE Alu 2 75 -73 8 1446 450 227 8 105 chr12 112867940 112868001 -8389529 + ID_B1 SINE B4 100 155 -69 8 1446 732 215 186 0 chr12 112868001 112868173 -8389357 + B3 SINE B2 5 208 -8 8 1446 292 336 13 67 chr12 112868173 112868244 -8389286 + B1_Mus1 SINE Alu 76 143 -5 8 1446 1008 46 15 22 chr12 112868625 112868759 -8388771 + B1_Mus2 SINE Alu 2 134 -13 8 1446 550 210 85 138 chr12 112868909 112869142 -8388388 - RCHARR1 DNA MER1_type -13 961 741 8 1446 549 262 35 7 chr12 112869142 112869284 -8388246 - B1_Mur1 SINE Alu -1 148 3 8 1446 550 210 85 138 chr12 112869284 112869332 -8388198 - RCHARR1 DNA MER1_type -234 740 695 8 1446 312 340 75 19 chr12 112869480 112869639 -8387891 + B3 SINE B2 38 205 -11 8 1446 352 312 96 26 chr12 112869724 112869839 -8387691 + RSINE1 SINE B4 37 159 -6 8 1446 828 234 31 164 chr12 112869972 112870197 -8387333 + B3 SINE B2 1 205 -11 8 1446 468 0 0 0 chr12 112870255 112870307 -8387223 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1446 1208 48 7 0 chr12 112870338 112870484 -8387046 + B1_Mus2 SINE Alu 1 147 0 8 1446 597 168 92 78 chr12 112870501 112870643 -8386887 + B1_Mur4 SINE Alu 3 146 -4 8 1446 342 312 0 146 chr12 112871060 112871225 -8386305 - PB1 SINE Alu -5 143 3 8 1446 538 260 33 20 chr12 112872213 112872366 -8385164 - MLT1A1 LTR MaLR -5 403 249 8 1446 569 200 9 9 chr12 112873766 112873872 -8383658 + B3 SINE B2 2 107 -109 8 1446 222 62 0 0 chr12 112873878 112873910 -8383620 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 8 1446 1644 16 5 11 chr12 112873944 112874134 -8383396 + B2_Mm1t SINE B2 2 190 -3 8 1446 1194 48 0 13 chr12 112874159 112874308 -8383222 + B1_Mus1 SINE Alu 2 148 0 8 1446 1313 60 54 11 chr12 112874333 112874518 -8383012 + B2_Mm2 SINE B2 2 194 -1 8 1446 339 268 0 0 chr12 112874566 112874637 -8382893 + B3 SINE B2 38 108 -108 8 1446 528 188 231 0 chr12 112874704 112874821 -8382709 + B1_Mur4 SINE Alu 2 145 -5 8 1446 436 191 41 41 chr12 112874832 112874930 -8382600 - B1_Mur3 SINE Alu -50 99 2 8 1446 475 231 129 15 chr12 112875072 112875204 -8382326 + B1_Mur1 SINE Alu 3 149 0 8 1446 1187 86 0 28 chr12 112875256 112875436 -8382094 + B2_Mm2 SINE B2 1 175 -20 8 1446 340 220 53 115 chr12 112875432 112875545 -8381985 + MT2B LTR ERVL 152 257 -344 8 1446 946 53 0 30 chr12 112875455 112875590 -8381940 + B1_Mus1 SINE Alu 18 148 0 8 1446 443 317 27 7 chr12 112875619 112875765 -8381765 + ID_B1 SINE B4 7 155 -69 8 1446 454 282 84 11 chr12 112875768 112875947 -8381583 + B3A SINE B2 1 192 -6 8 1446 794 232 16 31 chr12 112875949 112876140 -8381390 + B3 SINE B2 1 188 -28 8 1446 243 0 0 0 chr12 112876140 112876167 -8381363 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1446 937 101 7 20 chr12 112876175 112876327 -8381203 + B2_Mm2 SINE B2 2 151 -44 8 1446 441 235 20 0 chr12 112876703 112876801 -8380729 - PB1D7 SINE Alu -18 102 3 8 1446 349 217 54 0 chr12 112876805 112876897 -8380633 - L1M4 LINE L1 -509 5669 5573 8 1446 368 272 73 94 chr12 112877029 112877220 -8380310 - B4A SINE B4 -56 236 50 8 1446 313 172 139 23 chr12 112877249 112877347 -8380183 - L1M4 LINE L1 -697 5492 5383 8 1446 289 100 37 74 chr12 112877351 112877405 -8380125 - B3 SINE B2 -163 53 2 8 1446 646 289 11 55 chr12 112877488 112877671 -8379859 + B3A SINE B2 1 175 -23 9 1446 237 65 0 0 chr12 112877674 112877705 -8379825 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1446 660 318 53 15 chr12 112877729 112877991 -8379539 + B4A SINE B4 11 282 -10 9 1446 381 22 0 0 chr12 112878983 112879029 -8378501 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1446 231 204 0 39 chr12 112879041 112879092 -8378438 + ID SINE ID 34 82 -142 9 1446 225 312 87 26 chr12 112879111 112879226 -8378304 - B1F SINE Alu -27 122 1 9 1446 320 227 26 13 chr12 112879154 112879230 -8378300 - ID_B1 SINE B4 -71 153 77 9 1446 1075 280 79 12 chr12 112879336 112879665 -8377865 - MTE2b LTR MaLR -11 368 18 9 1446 1312 215 42 68 chr12 112879686 112880093 -8377437 + RMER12 LTR ERVK 1 443 -1405 9 1446 1516 68 0 15 chr12 112880194 112880389 -8377141 + B2_Mm1t SINE B2 2 193 0 9 1446 1094 73 0 0 chr12 112880401 112880551 -8376979 + B2_Mm2 SINE B2 1 150 -45 9 1446 329 202 0 130 chr12 112880598 112880706 -8376824 + ID_B1 SINE B4 127 220 -4 9 1446 568 26 0 25 chr12 112880632 112880711 -8376819 + B1_Mur4 SINE Alu 73 149 -1 9 1446 286 108 133 78 chr12 112880729 112880833 -8376697 + B2_Mm2 SINE B2 62 195 0 9 1446 547 244 24 166 chr12 112880897 112881270 -8376260 + RLTR22_Mur LTR ERVK 484 803 -1045 9 1446 676 207 51 83 chr12 112881372 112881588 -8375942 + RMER12 LTR ERVK 990 1198 -124 9 1446 353 205 2 25 chr12 112881674 112881741 -8375789 - ORR1A4 LTR MaLR -5 379 261 9 1446 1151 55 18 12 chr12 112881741 112881908 -8375622 + B2_Mm2 SINE B2 2 169 -26 9 1446 264 59 0 0 chr12 112881910 112881944 -8375586 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1446 1525 121 27 11 chr12 112881949 112882209 -8375321 - ORR1A4 LTR MaLR -65 264 1 9 1446 5103 118 78 43 chr12 112882209 112883214 -8374316 - ORR1A4-int LTR MaLR -218 1745 1011 9 1446 1114 69 7 0 chr12 112883214 112883359 -8374171 - B1_Mus1 SINE Alu -1 147 2 9 1446 5103 122 35 21 chr12 112883359 112883531 -8373999 - ORR1A4-int LTR MaLR -953 1010 844 9 1446 1226 178 110 29 chr12 112883653 112883925 -8373605 - MTD LTR MaLR -88 331 38 9 1446 522 237 22 44 chr12 112884014 112884151 -8373379 + B1_Mus1 SINE Alu 10 143 -5 9 1446 212 220 20 0 chr12 112886236 112886286 -8371244 - RSINE1 SINE B4 -113 52 2 9 1446 562 256 78 88 chr12 112886562 112886755 -8370775 + B3 SINE B2 9 199 -17 9 1446 222 118 0 0 chr12 112886756 112886790 -8370740 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 9 1446 748 59 0 0 chr12 112887029 112887130 -8370400 + B1_Mus1 SINE Alu 35 135 -13 9 1446 988 66 88 0 chr12 112887304 112887440 -8370090 - B1_Mus1 SINE Alu 0 148 1 9 1446 722 249 34 0 chr12 112887458 112887635 -8369895 - B3 SINE B2 -6 210 28 9 1446 582 227 60 15 chr12 112887649 112887783 -8369747 - B1_Mur2 SINE Alu -9 140 1 9 1446 1583 53 0 0 chr12 112888143 112888332 -8369198 + B2_Mm1a SINE B2 2 190 -3 9 1446 264 341 168 0 chr12 112888340 112888519 -8369011 + B3 SINE B2 1 209 -7 9 1446 277 319 0 0 chr12 112888781 112888850 -8368680 - RMER30 DNA MER1_type -1 201 133 9 1446 506 253 227 16 chr12 112889086 112889271 -8368259 - ID_B1 SINE B4 0 224 1 9 1446 278 238 93 23 chr12 112889565 112889651 -8367879 + PB1D10 SINE Alu 4 95 -22 9 1446 400 335 61 76 chr12 112889717 112889739 -8367791 - B4 SINE B4 -41 251 181 9 1446 880 117 7 21 chr12 112889739 112889879 -8367651 - B1_Mus1 SINE Alu -1 147 10 9 1446 400 335 61 76 chr12 112889879 112889914 -8367616 - B4 SINE B4 -41 180 58 9 1446 212 238 214 98 chr12 112890910 112891022 -8366508 + B1F2 SINE Alu 7 131 -18 9 1446 381 43 0 0 chr12 112891407 112891454 -8366076 + (GGA)n Simple_repeat Simple_repeat 1 47 0 9 1446 244 277 72 0 chr12 112892853 112892936 -8364594 - PB1 SINE Alu -7 120 32 9 1446 624 302 34 0 chr12 112895026 112895205 -8362325 + B3A SINE B2 4 188 -10 9 1446 439 270 27 9 chr12 112896050 112896162 -8361368 + PB1D9 SINE Alu 1 114 -6 9 1446 348 280 47 120 chr12 112896190 112896229 -8361301 + B4 SINE B4 66 93 -199 9 1446 560 202 26 0 chr12 112896229 112896343 -8361187 + B1_Mur1 SINE Alu 2 118 -31 9 1446 1289 119 0 0 chr12 112896613 112896789 -8360741 - B2_Mm2 SINE B2 -19 176 1 9 1446 430 71 14 8 chr12 112896801 112896911 -8360619 - B2_Mm2 SINE B2 0 195 47 9 1446 811 171 13 27 chr12 112896927 112897077 -8360453 - B1_Mur3 SINE Alu -1 148 1 9 1446 1156 119 43 21 chr12 112897725 112897913 -8359617 + B2_Mm2 SINE B2 2 193 -2 9 1446 823 128 113 0 chr12 112898269 112898402 -8359128 + B1_Mur3 SINE Alu 1 148 -1 9 1446 909 236 28 5 chr12 112899088 112899301 -8358229 - RLTR33 LTR ERVK -85 593 376 9 1446 492 198 77 8 chr12 112899322 112899439 -8358091 - RLTR33 LTR ERVK -410 268 144 9 1446 225 0 0 0 chr12 112899719 112899744 -8357786 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1446 1191 54 0 13 chr12 112899744 112899893 -8357637 - B1_Mus2 SINE Alu 0 147 1 9 1446 490 211 54 27 chr12 112899899 112900011 -8357519 - PB1D9 SINE Alu -5 115 1 9 1446 818 103 26 0 chr12 112900029 112900146 -8357384 + PB1D9 SINE Alu 1 120 0 9 1446 280 327 10 0 chr12 112900183 112900284 -8357246 - Lx9 LINE L1 -887 6757 6656 9 1446 1417 101 19 74 chr12 112900349 112900473 -8357057 - ORR1A3-int LTR MaLR -797 1166 1046 9 1446 282 29 0 0 chr12 112900473 112900508 -8357022 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 1446 928 79 119 0 chr12 112900512 112900638 -8356892 - B1_Mus1 SINE Alu -6 142 2 9 1446 1417 101 19 74 chr12 112900638 112900765 -8356765 - ORR1A3-int LTR MaLR -918 1045 924 9 1446 1006 108 120 0 chr12 112900784 112900942 -8356588 + B2_Mm1t SINE B2 2 178 -15 9 1446 1012 60 0 0 chr12 112900943 112901077 -8356453 + B1_Mm SINE Alu 14 147 0 9 1446 324 0 0 0 chr12 112901077 112901113 -8356417 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 9 1446 331 88 313 26 chr12 112901163 112901278 -8356252 + B2_Mm2 SINE B2 47 194 -1 9 1446 1007 96 20 14 chr12 112901303 112901451 -8356079 + B1_Mur3 SINE Alu 1 149 0 9 1446 189 0 0 0 chr12 112901768 112901789 -8355741 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1446 922 147 21 0 chr12 112902973 112903116 -8354414 - B1_Mus2 SINE Alu -1 146 1 9 1446 181 123 60 24 chr12 112903129 112903212 -8354318 + (GTTTG)n Simple_repeat Simple_repeat 5 90 0 9 1446 370 310 126 25 chr12 112904499 112904658 -8352872 + ID_B1 SINE B4 2 176 -48 9 1446 262 243 0 54 chr12 112904667 112904741 -8352789 + ID4_ SINE ID 12 81 -2 9 1446 518 206 0 19 chr12 112906159 112906263 -8351267 - B1_Mus2 SINE Alu -6 141 40 9 1446 309 51 0 0 chr12 112907499 112907538 -8349992 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1446 357 296 38 83 chr12 112911374 112911597 -8345933 + L1MC LINE L1 5488 5699 -541 9 1446 1201 68 0 0 chr12 112911733 112911879 -8345651 - B1_Mus2 SINE Alu -1 146 1 9 1446 333 250 25 49 chr12 112911879 112912001 -8345529 + B1_Mur4 SINE Alu 13 131 -19 9 1446 421 215 174 0 chr12 112912118 112912239 -8345291 - B1_Mm SINE Alu -1 146 5 9 1446 1174 58 0 0 chr12 112912763 112912901 -8344629 - B1_Mm SINE Alu -9 138 1 9 1446 1391 80 32 0 chr12 112912941 112913128 -8344402 + B2_Mm1t SINE B2 1 193 0 9 1446 589 215 8 0 chr12 112913144 112913265 -8344265 + B1_Mur2 SINE Alu 28 149 0 9 1446 657 167 53 0 chr12 112914570 112914702 -8342828 + B1_Mur2 SINE Alu 11 149 0 9 1446 411 165 32 87 chr12 112915209 112915335 -8342195 + Lx LINE L1 6536 6654 0 9 1446 988 61 121 0 chr12 112918083 112918215 -8339315 + B1_Mus1 SINE Alu 1 148 0 9 1446 282 116 0 0 chr12 112918215 112918258 -8339272 + (A)n Simple_repeat Simple_repeat 1 43 0 9 1446 1088 82 0 33 chr12 112918358 112918509 -8339021 - B1_Mus1 SINE Alu 0 148 3 9 1446 225 65 0 0 chr12 112920098 112920129 -8337401 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 9 1446 639 0 0 0 chr12 112921659 112921730 -8335800 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 1446 1425 75 43 0 chr12 112922980 112923167 -8334363 - B2_Mm2 SINE B2 0 195 1 9 1446 352 219 0 14 chr12 112923201 112923275 -8334255 - B1_Mur3 SINE Alu -7 142 70 9 1446 1235 54 0 0 chr12 112923289 112923437 -8334093 + B1_Mus1 SINE Alu 1 148 0 9 1446 582 185 147 44 chr12 112924911 112925047 -8332483 + RSINE1 SINE B4 4 153 -12 9 1446 282 319 32 106 chr12 112925061 112925093 -8332437 - B3A SINE B2 -22 176 2 9 1446 358 353 32 25 chr12 112925093 112925250 -8332280 - B4 SINE B4 -133 159 2 9 1446 1232 62 0 0 chr12 112926874 112927020 -8330510 + B1_Mus2 SINE Alu 2 147 0 9 1446 429 103 0 0 chr12 112927441 112927509 -8330021 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1446 459 339 25 0 chr12 112927509 112927630 -8329900 - RSINE1 SINE B4 -40 125 2 9 1446 205 369 49 0 chr12 112927651 112927773 -8329757 + L4 LINE RTE 1779 1906 -123 9 1446 246 272 63 32 chr12 112928427 112928522 -8329008 + MT2B LTR ERVL 160 257 -344 9 1446 542 179 171 0 chr12 112928437 112928560 -8328970 + B1_Mur3 SINE Alu 6 149 0 9 1446 313 122 0 0 chr12 112928695 112928744 -8328786 - B1_Mus1 SINE Alu -94 54 6 9 1446 213 307 57 0 chr12 112929344 112929432 -8328098 - B1_Mur2 SINE Alu -47 102 10 9 1446 513 0 0 0 chr12 112929792 112929849 -8327681 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1446 1154 75 0 13 chr12 112930432 112930581 -8326949 - B1_Mm SINE Alu 0 147 1 9 1446 281 291 87 29 chr12 112930835 112930973 -8326557 + RMER15 LTR ERVL 407 552 -23 9 1446 208 312 104 0 chr12 112934202 112934327 -8323203 - L2c LINE L2 -233 3154 3017 9 1446 541 160 20 10 chr12 112935366 112935467 -8322063 + B1_Mur4 SINE Alu 2 103 -47 1 1446 552 253 48 80 chr12 112935467 112935651 -8321879 - B3 SINE B2 0 198 1 1 1446 900 135 21 7 chr12 112937237 112937379 -8320151 + B1_Mus1 SINE Alu 5 148 0 1 1446 231 36 0 0 chr12 112937379 112937407 -8320123 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1446 643 188 0 45 chr12 112938087 112938221 -8319309 + B1_Mus2 SINE Alu 2 129 -18 1 1446 485 263 0 43 chr12 112938749 112938769 -8318761 + ID SINE ID 66 79 -145 1 1446 719 185 8 0 chr12 112938769 112938899 -8318631 + B1_Mur1 SINE Alu 1 131 -18 1 1446 510 100 25 0 chr12 112938893 112938973 -8318557 + B1_Mur3 SINE Alu 68 149 0 1 1446 497 220 30 0 chr12 112939840 112939940 -8317590 + B1_Mur2 SINE Alu 6 108 -41 1 1446 2646 56 0 0 chr12 112940224 112940566 -8316964 - MTA_Mm LTR MaLR -54 342 1 1 1446 711 105 0 0 chr12 112940916 112941021 -8316509 - B1_Mus2 SINE Alu -1 146 42 1 1446 594 214 0 0 chr12 112941030 112941284 -8316246 + CT-rich Low_complexity Low_complexity 1 254 0 1 1446 268 218 0 0 chr12 112941326 112941381 -8316149 - B1_Mur4 SINE Alu -95 55 1 1 1446 1110 77 0 7 chr12 112942185 112942321 -8315209 + B1_Mus1 SINE Alu 2 137 -11 1 1446 216 86 0 0 chr12 112942321 112942356 -8315174 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1446 180 0 0 0 chr12 112942465 112942485 -8315045 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1446 1237 34 7 0 chr12 112942492 112942638 -8314892 - B1_Mus1 SINE Alu 0 148 2 1 1446 298 175 63 0 chr12 112944218 112944281 -8313249 - B2_Mm1a SINE B2 -2 191 125 1 1446 1158 135 17 0 chr12 112944329 112944507 -8313023 - B2_Mm2 SINE B2 -14 181 1 1 1446 228 348 22 0 chr12 112945286 112945378 -8312152 + PB1D9 SINE Alu 26 119 -1 1 1446 180 0 0 0 chr12 112945439 112945459 -8312071 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1446 323 281 9 2 chr12 112945501 112945594 -8311936 + ID_B1 SINE B4 81 179 -113 1 1446 1160 48 0 13 chr12 112945673 112945822 -8311708 - B1_Mus1 SINE Alu 0 148 2 1 1446 1195 47 0 0 chr12 112946751 112946899 -8310631 - B1_Mus1 SINE Alu 0 148 1 1 1446 339 335 36 56 chr12 112949749 112949795 -8307735 + B4 SINE B4 55 92 -200 1 1446 851 215 55 10 chr12 112949795 112949997 -8307533 + B3 SINE B2 1 211 -5 1 1446 339 335 36 56 chr12 112949997 112950146 -8307384 + B4 SINE B4 93 246 -46 1 1446 296 336 17 43 chr12 112950311 112950426 -8307104 + PB1D10 SINE Alu 6 117 0 1 1446 22 80 0 0 chr12 112951102 112951152 -8306378 + GC_rich Low_complexity Low_complexity 1 50 0 1 1446 22 0 0 0 chr12 112951164 112951186 -8306344 + GC_rich Low_complexity Low_complexity 1 22 0 1 1446 25 0 0 0 chr12 112951367 112951392 -8306138 + GC_rich Low_complexity Low_complexity 1 25 0 1 1446 219 139 0 0 chr12 112951977 112952013 -8305517 + B2_Mm2 SINE B2 2 37 -158 1 1446 1470 62 0 5 chr12 112952082 112952275 -8305255 - B2_Mm1a SINE B2 0 193 2 1 1446 1033 57 35 0 chr12 112952326 112952467 -8305063 + B1_Mus2 SINE Alu 2 147 0 1 1446 261 257 108 18 chr12 112952996 112953107 -8304423 - RSINE1 SINE B4 -37 128 8 1 1446 246 217 27 55 chr12 112953207 112953280 -8304250 + B1_Mur2 SINE Alu 74 144 -5 1 1446 304 138 298 48 chr12 112953629 112953713 -8303817 + B1_Mus2 SINE Alu 43 147 0 1 1446 279 276 42 25 chr12 112953905 112954024 -8303506 - ID_B1 SINE B4 0 224 104 1 1446 813 168 0 32 chr12 112954060 112954214 -8303316 - B1_Mur3 SINE Alu 0 149 1 1 1446 1102 201 9 14 chr12 112954220 112954235 -8303295 - B3 SINE B2 0 216 203 1 1446 234 0 0 0 chr12 112954235 112954261 -8303269 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1 1446 1102 201 9 14 chr12 112954261 112954462 -8303068 - B3 SINE B2 -14 202 1 1 1446 405 177 64 121 chr12 112954645 112954786 -8302744 + B1_Mur1 SINE Alu 1 133 -16 1 1446 2275 137 3 7 chr12 112954695 112955070 -8302460 + RLTR10C LTR ERVK 56 416 -20 1 1446 1055 29 65 7 chr12 112955087 112955226 -8302304 + B1_Mm SINE Alu 1 147 0 1 1446 1103 74 31 0 chr12 112955251 112955413 -8302117 + B2_Mm1t SINE B2 27 193 0 1 1446 1186 48 0 0 chr12 112955435 112955581 -8301949 + B1_Mus2 SINE Alu 1 146 -1 1 1446 464 184 60 17 chr12 112955608 112955724 -8301806 + B1_Mus1 SINE Alu 28 148 0 1 1446 1095 75 0 0 chr12 112955751 112955897 -8301633 + B1_Mm SINE Alu 2 147 0 1 1446 581 154 16 41 chr12 112955897 112956019 -8301511 + MTC LTR MaLR 73 191 -230 1 1446 478 240 129 58 chr12 112955999 112956154 -8301376 + B2_Mm2 SINE B2 8 173 -22 1 1446 231 61 0 0 chr12 112956161 112956194 -8301336 + B2_Mm2 SINE B2 5 37 -158 1 1446 961 93 14 0 chr12 112956315 112956455 -8301075 + B1_Mus1 SINE Alu 7 148 0 1 1446 624 180 257 6 chr12 112956470 112956649 -8300881 + MTD LTR MaLR 196 419 0 1 1446 246 293 95 29 chr12 112957560 112957697 -8299833 - B1_Mus1 SINE Alu -1 147 2 1 1446 395 257 87 4 chr12 112957697 112957811 -8299719 - B1F2 SINE Alu -22 127 9 1 1446 398 222 53 106 chr12 112958425 112958632 -8298898 - B3A SINE B2 -2 196 1 1 1446 281 257 174 0 chr12 112958638 112958747 -8298783 - B1_Mm SINE Alu -18 129 2 1 1446 1490 48 21 0 chr12 112958761 112958950 -8298580 - B2_Mm1a SINE B2 0 193 1 1 1446 257 170 75 0 chr12 112958978 112959031 -8298499 + BC1_Mm scRNA scRNA 2 58 -94 1 1446 214 158 0 0 chr12 112959031 112959069 -8298461 + G-rich Low_complexity Low_complexity 1 38 0 1 1446 239 188 21 0 chr12 112959220 112959268 -8298262 - B1F SINE Alu -95 54 6 1 1446 26 30 0 0 chr12 112959279 112959312 -8298218 + AT_rich Low_complexity Low_complexity 1 33 0 1 1446 530 228 48 33 chr12 112959522 112959713 -8297817 + B3 SINE B2 2 186 -9 1 1446 25 51 0 0 chr12 112959782 112959821 -8297709 + AT_rich Low_complexity Low_complexity 1 39 0 1 1446 222 368 9 70 chr12 112959918 112960032 -8297498 - ID_B1 SINE B4 -116 108 2 1 1446 318 214 102 0 chr12 112960053 112960151 -8297379 - PB1D10 SINE Alu -8 109 2 1 1446 291 188 62 15 chr12 112960215 112960280 -8297250 + PB1D10 SINE Alu 1 68 -49 1 1446 1196 81 35 6 chr12 112960280 112960454 -8297076 + B2_Mm1t SINE B2 1 179 -14 1 1446 338 111 0 18 chr12 112960502 112960557 -8296973 + B2_Mm2 SINE B2 48 101 -94 1 1446 24 53 0 0 chr12 112960573 112960611 -8296919 + AT_rich Low_complexity Low_complexity 1 38 0 1 1446 398 278 79 8 chr12 112961164 112961291 -8296239 + B1_Mur1 SINE Alu 1 136 -13 1 1446 22 0 0 0 chr12 112961321 112961343 -8296187 + AT_rich Low_complexity Low_complexity 1 22 0 1 1446 1256 75 37 16 chr12 112961493 112961682 -8295848 + B2_Mm1a SINE B2 1 193 0 1 1446 928 194 29 15 chr12 112961956 112962160 -8295370 + B3 SINE B2 4 210 -6 1 1446 1448 73 0 5 chr12 112962162 112962355 -8295175 - B2_Mm1t SINE B2 -1 192 1 1 1446 483 260 30 38 chr12 112962380 112962512 -8295018 - ID_B1 SINE B4 0 224 94 1 1446 200 312 0 59 chr12 112964010 112964095 -8293435 + C-rich Low_complexity Low_complexity 1 80 0 1 1446 769 125 171 0 chr12 112965016 112965168 -8292362 + B2_Mm1t SINE B2 2 179 -14 1 1446 391 122 288 25 chr12 112965215 112965333 -8292197 + B2_Mm2 SINE B2 47 195 0 1 1446 450 0 0 0 chr12 112966101 112966151 -8291379 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1446 210 219 151 94 chr12 112966243 112966349 -8291181 - B1_Mur4 SINE Alu 0 150 39 1 1446 1004 126 0 0 chr12 112966533 112966676 -8290854 - B1_Mus2 SINE Alu 0 147 5 1 1446 597 237 156 23 chr12 112966761 112966934 -8290596 - B3 SINE B2 -18 198 3 1 1446 322 268 0 47 chr12 112966943 112967029 -8290501 - ID_B1 SINE B4 -4 220 139 1 1446 845 187 107 15 chr12 112967131 112967327 -8290203 + B3 SINE B2 3 216 0 1 1446 528 237 40 23 chr12 112967351 112967528 -8290002 + B3A SINE B2 3 182 -16 1 1446 529 220 9 0 chr12 112967599 112967708 -8289822 + B1_Mur3 SINE Alu 1 110 -39 1 1446 907 155 7 0 chr12 112967761 112967909 -8289621 - B1_Mur3 SINE Alu 0 149 1 1 1446 365 259 0 85 chr12 112967805 112967923 -8289607 - MT2B LTR ERVL -343 258 151 1 1446 1237 34 0 0 chr12 112967936 112968084 -8289446 - B1_Mus1 SINE Alu 0 148 1 1 1446 262 231 129 21 chr12 112968087 112968180 -8289350 - PB1D7 SINE Alu 0 120 18 1 1446 1437 22 50 0 chr12 112969455 112969634 -8287896 - B2_Mm1a SINE B2 -4 189 2 1 1446 333 0 0 0 chr12 112969767 112969804 -8287726 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1446 651 132 18 0 chr12 112969938 112970052 -8287478 + B1_Mus2 SINE Alu 32 147 0 1 1446 700 221 0 14 chr12 112970479 112970617 -8286913 - B1_Mur2 SINE Alu -4 145 10 1 1446 333 0 0 0 chr12 112971734 112971771 -8285759 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1446 1102 90 0 0 chr12 112972217 112972373 -8285157 + B2_Mm2 SINE B2 2 157 -38 1 1446 411 21 0 0 chr12 112972373 112972421 -8285109 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1 1446 253 309 81 8 chr12 112972692 112972816 -8284714 + ORR1E LTR MaLR 3 135 -224 1 1446 1115 74 0 0 chr12 112973747 112973895 -8283635 - B2_Mm2 SINE B2 -46 149 2 1 1446 248 174 0 0 chr12 112974004 112974050 -8283480 - RSINE1 SINE B4 -41 124 79 1 1446 307 314 91 0 chr12 112974196 112974317 -8283213 - B1F1 SINE Alu -8 141 10 1 1446 240 35 0 0 chr12 112974367 112974396 -8283134 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1446 1222 34 0 0 chr12 112974396 112974543 -8282987 - B1_Mm SINE Alu 0 147 1 1 1446 789 171 43 0 chr12 112974592 112974732 -8282798 + B3 SINE B2 1 146 -70 1 1446 518 89 11 0 chr12 112974735 112974825 -8282705 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 1446 720 48 87 0 chr12 112974840 112974944 -8282586 + B1_Mus1 SINE Alu 28 140 -8 1 1446 315 0 0 0 chr12 112974944 112974979 -8282551 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1446 267 143 0 0 chr12 112975102 112975144 -8282386 - B1_Mur4 SINE Alu -107 43 2 1 1446 1032 68 132 63 chr12 112975152 112975172 -8282358 - B2_Mm1t SINE B2 -6 187 175 1 1446 1089 75 0 0 chr12 112975172 112975318 -8282212 + B1_Mus2 SINE Alu 2 147 0 1 1446 1032 68 132 63 chr12 112975318 112975471 -8282059 - B2_Mm1t SINE B2 -19 174 2 1 1446 693 250 87 20 chr12 112975570 112975823 -8281707 - Lx8 LINE L1 -129 7344 7075 1 1446 400 128 31 38 chr12 112975880 112975977 -8281553 - B1_Mur3 SINE Alu 0 149 10 1 1446 225 83 0 0 chr12 112975993 112976029 -8281501 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1 1446 967 64 41 41 chr12 112976029 112976176 -8281354 - B1_Mus1 SINE Alu 0 148 2 1 1446 791 184 193 11 chr12 112976212 112976393 -8281137 - B3 SINE B2 -1 215 2 1 1446 392 55 0 18 chr12 112976918 112976974 -8280556 + (TTA)n Simple_repeat Simple_repeat 1 55 0 1 1446 634 206 135 17 chr12 112976979 112977008 -8280522 - B3 SINE B2 -17 199 172 1 1446 615 62 0 0 chr12 112977008 112977088 -8280442 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 1 1446 634 206 135 17 chr12 112977088 112977236 -8280294 - B3 SINE B2 -45 171 1 1 1446 210 200 0 0 chr12 112977248 112977283 -8280247 - B1_Mur1 SINE Alu -42 107 73 1 1446 253 220 34 0 chr12 112977714 112977773 -8279757 + ID4_ SINE ID 5 65 -18 1 1446 507 17 0 0 chr12 112977788 112977848 -8279682 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1446 709 98 159 24 chr12 112977956 112978082 -8279448 - B1_Mur4 SINE Alu -7 143 1 1 1446 452 239 37 0 chr12 112978539 112978648 -8278882 - PB1D9 SINE Alu -6 114 2 1 1446 904 145 63 53 chr12 112978661 112978682 -8278848 - B2_Mm1t SINE B2 -2 191 160 1 1446 282 29 0 0 chr12 112978682 112978717 -8278813 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1446 1096 57 0 60 chr12 112978717 112978884 -8278646 - B2_Mm2 SINE B2 -38 157 1 1 1446 930 19 0 0 chr12 112978888 112978996 -8278534 + (TATATG)n Simple_repeat Simple_repeat 4 111 0 1 1446 355 234 83 18 chr12 112978996 112979105 -8278425 - B1F SINE Alu -7 142 27 1 1446 986 199 56 0 chr12 112979430 112979626 -8277904 - B3 SINE B2 -8 208 2 1 1446 569 133 0 10 chr12 112980119 112980128 -8277402 + (TCC)n Simple_repeat Simple_repeat 2 10 0 1 1446 1164 89 0 16 chr12 112980128 112980311 -8277219 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1446 569 133 0 10 chr12 112980311 112980400 -8277130 + (TCC)n Simple_repeat Simple_repeat 3 91 0 1 1446 680 159 73 29 chr12 112980402 112980538 -8276992 - B1_Mur3 SINE Alu -6 143 2 1 1446 473 169 78 117 chr12 112980570 112980724 -8276806 - B1_Mur1 SINE Alu 0 149 2 1 1446 207 0 0 0 chr12 112980737 112980760 -8276770 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1446 1020 73 0 22 chr12 112980760 112980899 -8276631 - B1_Mus2 SINE Alu -11 136 1 1 1446 227 333 67 0 chr12 112980951 112981026 -8276504 - ID_B1 SINE B4 -2 222 143 1 1446 1512 26 0 63 chr12 112981027 112981232 -8276298 - B2_Mm1a SINE B2 0 193 2 1 1446 1520 42 5 0 chr12 112981244 112981435 -8276095 - B2_Mm1a SINE B2 0 193 2 1 1446 767 225 0 0 chr12 112981444 112981586 -8275944 - B1_Mur2 SINE Alu 0 149 8 1 1446 312 277 161 68 chr12 112981649 112981897 -8275633 - L1MB3 LINE L1 -56 6127 5857 1 1446 452 89 13 0 chr12 112982570 112982649 -8274881 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1446 857 117 0 76 chr12 112982702 112982859 -8274671 + B1_Mm SINE Alu 2 146 -1 1 1446 243 79 0 0 chr12 112982865 112982903 -8274627 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1 180 404 202 133 9 chr12 112983974 112984079 -8273451 + RSINE1 SINE B4 3 120 -45 1 1447 601 128 88 0 chr12 112984153 112984255 -8273275 + B1_Mur2 SINE Alu 37 147 -2 1 1447 224 254 18 0 chr12 112984679 112984734 -8272796 + MIRc SINE MIR 115 170 -98 1 1447 479 146 12 0 chr12 112985179 112985261 -8272269 - ID_B1 SINE B4 -2 222 140 1 1447 230 277 63 90 chr12 112985261 112985290 -8272240 - PB1D10 SINE Alu 0 117 10 1 1447 612 273 59 44 chr12 112986183 112986386 -8271144 + ID_B1 SINE B4 5 210 -14 1 1447 260 53 26 0 chr12 112986399 112986437 -8271093 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1447 445 273 24 32 chr12 112986543 112986668 -8270862 + RSINE1 SINE B4 11 134 -31 1 1447 467 248 43 34 chr12 112986758 112986875 -8270655 + B1F SINE Alu 1 118 -31 1 1447 1030 60 30 0 chr12 112986900 112987034 -8270496 - B1_Mm SINE Alu -9 138 1 1 1447 234 253 226 21 chr12 112987074 112987167 -8270363 + B1F1 SINE Alu 13 124 -25 1 1447 286 200 0 0 chr12 112987201 112987256 -8270274 + ID4 SINE ID 26 80 -3 1 1447 230 326 10 21 chr12 112987261 112987358 -8270172 - PB1D10 SINE Alu -21 96 1 1 1447 983 121 16 60 chr12 112987507 112987692 -8269838 - B2_Mm2 SINE B2 -18 177 1 1 1447 4886 106 101 29 chr12 112987915 112988809 -8268721 + RMER17B LTR ERVK 1 958 0 1 1447 252 235 43 29 chr12 112988828 112988898 -8268632 + ID4_ SINE ID 3 73 -10 1 1447 237 291 78 8 chr12 112989483 112989611 -8267919 + L1MB3 LINE L1 6044 6180 -3 1 1447 216 305 17 0 chr12 112989714 112989773 -8267757 + B4 SINE B4 87 146 -146 1 1447 264 232 76 64 chr12 112989725 112989844 -8267686 + B1F2 SINE Alu 10 117 0 1 1447 402 206 271 39 chr12 112989878 112990054 -8267476 + ID_B1 SINE B4 5 221 -3 1 1447 2041 122 91 41 chr12 112990055 112990375 -8267155 + ORR1B1 LTR MaLR 1 337 -57 1 1447 1542 32 0 11 chr12 112990375 112990566 -8266964 + B2_Mm1t SINE B2 2 190 -3 1 1447 2041 117 94 40 chr12 112990566 112990633 -8266897 + ORR1B1 LTR MaLR 338 394 0 1 1447 183 42 0 0 chr12 112990759 112990783 -8266747 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1447 627 149 0 12 chr12 112991142 112991253 -8266277 + B1_Mur2 SINE Alu 22 149 0 1 1447 251 289 0 26 chr12 112991876 112991923 -8265607 + polypyrimidine Low_complexity Low_complexity 35 79 0 1 1447 234 0 0 0 chr12 112991923 112991949 -8265581 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 1 1447 251 289 0 26 chr12 112991949 112991979 -8265551 + polypyrimidine Low_complexity Low_complexity 5 34 0 1 1447 239 79 26 0 chr12 112992012 112992050 -8265480 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1447 1107 75 7 0 chr12 112992050 112992197 -8265333 - B1_Mus1 SINE Alu 0 148 1 1 1447 1531 21 27 0 chr12 112992340 112992527 -8265003 - B2_Mm1t SINE B2 0 193 2 1 1447 799 114 0 64 chr12 112992534 112992674 -8264856 - B1_Mus2 SINE Alu -2 145 15 1 1447 204 40 0 0 chr12 112992796 112992821 -8264709 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 1447 577 220 17 0 chr12 112992821 112992939 -8264591 + ID_B1 SINE B4 102 221 -3 1 1447 1979 131 149 11 chr12 112992950 112993320 -8264210 + MTC LTR MaLR 1 421 0 1 1447 227 249 79 9 chr12 112993975 112994046 -8263484 + MIRb SINE MIR 131 207 -55 1 1447 840 227 18 54 chr12 112994046 112994269 -8263261 + ID_B1 SINE B4 2 216 -8 1 1447 213 275 96 36 chr12 112994269 112994280 -8263250 + MIR SINE MIR 208 218 -44 1 1447 198 0 0 0 chr12 112994830 112994852 -8262678 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1447 401 241 222 56 chr12 112995166 112995364 -8262166 + RMER15 LTR ERVL 326 556 -19 1 1447 641 256 23 20 chr12 112995343 112995541 -8261989 - B3A SINE B2 -8 208 15 1 1447 21 0 0 0 chr12 112997069 112997090 -8260440 + GC_rich Low_complexity Low_complexity 1 21 0 1 1447 21 36 0 0 chr12 112997271 112997299 -8260231 + GC_rich Low_complexity Low_complexity 1 28 0 1 1447 1353 89 0 5 chr12 112999285 112999476 -8258054 + B2_Mm2 SINE B2 2 191 -4 1 1447 637 272 44 15 chr12 112999489 112999694 -8257836 + B3 SINE B2 1 211 -5 1 1447 646 204 180 42 chr12 113000758 113000947 -8256583 - B3 SINE B2 -1 215 1 1 1447 223 348 0 0 chr12 113001018 113001087 -8256443 + L2a LINE L2 3358 3426 0 2 1447 691 188 57 14 chr12 113001579 113001719 -8255811 + B1_Mur2 SINE Alu 2 147 -2 3 1447 294 293 35 35 chr12 113001819 113001904 -8255626 + PB1D10 SINE Alu 22 106 -11 4 1447 298 253 11 65 chr12 113001919 113002012 -8255518 + BC1_Mm scRNA scRNA 6 93 -59 5 1447 21 0 0 0 chr12 113002110 113002131 -8255399 + AT_rich Low_complexity Low_complexity 1 21 0 6 1447 716 204 13 20 chr12 113002207 113002357 -8255173 - B1F2 SINE Alu 0 149 1 7 1447 678 111 38 38 chr12 113002608 113002739 -8254791 - B1_Mur4 SINE Alu -10 140 10 8 1447 855 73 0 31 chr12 113002893 113003020 -8254510 - B1_Mm SINE Alu 0 147 25 9 1447 271 228 120 0 chr12 113003040 113003132 -8254398 - Lx9 LINE L1 -161 7483 7381 1 1447 405 0 0 0 chr12 113003149 113003194 -8254336 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1447 840 150 35 14 chr12 113003194 113003327 -8254203 - B1_Mur2 SINE Alu -11 138 1 1 1447 210 255 0 0 chr12 113003327 113003374 -8254156 + CT-rich Low_complexity Low_complexity 4 50 0 1 1447 398 240 152 32 chr12 113003374 113003499 -8254031 - B1_Mur4 SINE Alu 0 150 11 1 1447 1122 55 13 52 chr12 113003627 113003780 -8253750 - B1_Mus1 SINE Alu -1 147 1 1 1447 198 0 0 0 chr12 113003790 113003812 -8253718 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1447 210 143 0 0 chr12 113003859 113003894 -8253636 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1447 204 125 0 0 chr12 113003892 113003924 -8253606 + (CATGC)n Simple_repeat Simple_repeat 3 34 0 1 1447 718 263 56 0 chr12 113003929 113004108 -8253422 - ID_B1 SINE B4 -19 205 17 1 1447 257 254 87 29 chr12 113004299 113004368 -8253162 - ID4 SINE ID -10 73 1 2 1447 189 107 0 0 chr12 113004455 113004483 -8253047 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1447 266 139 281 37 chr12 113004512 113004594 -8252936 + B1_Mur4 SINE Alu 47 148 -2 2 1447 252 137 0 0 chr12 113005664 113005715 -8251815 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1447 431 216 216 0 chr12 113005804 113005915 -8251615 + B1F SINE Alu 4 138 -11 2 1447 229 224 73 15 chr12 113005920 113005988 -8251542 + BC1_Mm scRNA scRNA 2 73 -79 2 1447 624 219 66 0 chr12 113005927 113005994 -8251536 + ID SINE ID 12 87 -137 2 1447 332 256 76 13 chr12 113005994 113006064 -8251466 + PB1D10 SINE Alu 1 75 -42 2 1447 254 217 127 28 chr12 113006064 113006135 -8251395 + B4 SINE B4 2 79 -213 2 1447 276 276 62 70 chr12 113006163 113006381 -8251149 - MURVY-LTR LTR ERV1 -53 466 199 2 1447 198 0 0 0 chr12 113007156 113007178 -8250352 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1447 1592 47 16 0 chr12 113007179 113007370 -8250160 - B2_Mm2 SINE B2 -1 194 1 3 1447 903 72 128 0 chr12 113007372 113007497 -8250033 - B1_Mus1 SINE Alu -3 145 5 3 1447 603 310 28 57 chr12 113007554 113007766 -8249764 - B3 SINE B2 -10 206 1 3 1447 239 333 11 53 chr12 113007812 113007907 -8249623 - PB1D7 SINE Alu -29 91 1 3 1447 230 377 22 7 chr12 113007907 113008046 -8249484 + L3 LINE CR1 4211 4351 -138 3 1447 849 20 0 0 chr12 113008332 113008431 -8249099 + (TC)n Simple_repeat Simple_repeat 1 99 0 3 1447 450 0 0 0 chr12 113008431 113008481 -8249049 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1447 867 152 71 33 chr12 113009206 113009380 -8248150 + B2_Mm2 SINE B2 4 185 -10 3 1447 1503 83 0 5 chr12 113009380 113009574 -8247956 + B2_Mm1t SINE B2 1 193 0 3 1447 299 25 25 0 chr12 113009594 113009634 -8247896 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 4 1447 908 115 0 0 chr12 113009712 113009842 -8247688 - B1_Mus2 SINE Alu -6 141 12 4 1447 795 142 119 0 chr12 113010085 113010219 -8247311 - B1_Mur4 SINE Alu 0 150 1 4 1447 1096 208 24 19 chr12 113010237 113010448 -8247082 - B3 SINE B2 -1 215 4 4 1447 953 163 0 0 chr12 113010940 113011087 -8246443 + B1_Mur4 SINE Alu 2 148 -2 4 1447 185 224 0 29 chr12 113011405 113011474 -8246056 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 4 1447 1117 101 0 0 chr12 113011485 113011633 -8245897 - B1_Mus1 SINE Alu 0 148 1 4 1447 587 212 52 15 chr12 113011644 113011778 -8245752 - B1_Mur2 SINE Alu -10 139 1 4 1447 432 287 107 29 chr12 113011787 113011927 -8245603 - RSINE1 SINE B4 -4 161 11 4 1447 388 211 95 0 chr12 113012926 113013021 -8244509 + B1F2 SINE Alu 40 143 -6 4 1447 351 0 0 0 chr12 113014343 113014382 -8243148 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1447 302 317 66 16 chr12 113014384 113014430 -8243100 - B1F2 SINE Alu -19 130 81 5 1447 1297 179 0 19 chr12 113014430 113014646 -8242884 - B3 SINE B2 -3 213 2 5 1447 302 317 66 16 chr12 113014646 113014721 -8242809 - B1F2 SINE Alu -69 80 3 5 1447 243 0 0 0 chr12 113016145 113016172 -8241358 + (CTAA)n Simple_repeat Simple_repeat 1 27 0 5 1447 354 23 0 0 chr12 113016951 113016994 -8240536 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 1447 296 278 0 102 chr12 113017239 113017347 -8240183 + MT2B LTR ERVL 161 257 -344 5 1447 776 185 0 0 chr12 113017255 113017390 -8240140 + B1_Mur4 SINE Alu 14 148 -2 5 1447 923 217 23 0 chr12 113017400 113017575 -8239955 + B3 SINE B2 1 179 -37 5 1447 916 222 113 0 chr12 113017860 113018054 -8239476 - B3 SINE B2 0 216 1 5 1447 880 226 57 38 chr12 113018172 113018384 -8239146 - B3 SINE B2 0 216 1 5 1447 768 131 72 14 chr12 113018868 113019007 -8238523 - B1_Mur3 SINE Alu 0 149 3 6 1447 531 227 90 15 chr12 113019335 113019469 -8238061 + B1F SINE Alu 5 148 -1 6 1447 231 289 12 35 chr12 113019517 113019603 -8237927 + PB1 SINE Alu 1 84 -43 6 1447 236 242 30 15 chr12 113019616 113019683 -8237847 + CT-rich Low_complexity Low_complexity 2 69 0 6 1447 1112 185 117 36 chr12 113020368 113020677 -8236853 - ORR1D1 LTR MaLR 0 374 41 6 1447 399 160 0 0 chr12 113021204 113021279 -8236251 + CT-rich Low_complexity Low_complexity 1 75 0 6 1447 1174 83 130 0 chr12 113021284 113021453 -8236077 - B2_Mm2 SINE B2 -3 192 2 6 1447 676 247 37 26 chr12 113021735 113021926 -8235604 + B2_Mm2 SINE B2 1 192 -1 6 1447 622 189 9 0 chr12 113022612 113022723 -8234807 - B1_Mur2 SINE Alu -23 126 15 6 1447 3360 35 15 0 chr12 113022723 113023117 -8234413 - MTB LTR MaLR 0 400 1 6 1447 579 200 8 48 chr12 113023117 113023131 -8234399 - B1F2 SINE Alu -130 19 6 7 1447 306 87 0 0 chr12 113023150 113023196 -8234334 + (TCC)n Simple_repeat Simple_repeat 2 47 0 7 1447 240 206 58 14 chr12 113023196 113023265 -8234265 - PB1D9 SINE Alu 0 120 49 7 1447 1189 75 0 0 chr12 113023295 113023441 -8234089 - B1_Mus1 SINE Alu -2 146 1 7 1447 287 136 17 0 chr12 113023554 113023613 -8233917 + (CGGGG)n Simple_repeat Simple_repeat 5 64 0 7 1447 554 217 135 30 chr12 113023985 113024108 -8233422 + B1F2 SINE Alu 3 140 -9 7 1447 189 94 0 0 chr12 113024108 113024140 -8233390 + (CAA)n Simple_repeat Simple_repeat 2 33 0 7 1447 300 83 0 0 chr12 113024716 113024764 -8232766 + (ATTG)n Simple_repeat Simple_repeat 2 49 0 7 1447 266 95 0 67 chr12 113024764 113024809 -8232721 - PB1D7 SINE Alu -9 111 70 7 1447 280 143 0 0 chr12 113024803 113024845 -8232685 - B1_Mus1 SINE Alu -105 43 2 7 1447 409 223 9 37 chr12 113024849 113024956 -8232574 - PB1D10 SINE Alu -2 115 12 8 1447 714 246 71 60 chr12 113025010 113025291 -8232239 - B4A SINE B4 -8 284 1 8 1447 629 268 109 16 chr12 113026580 113026773 -8230757 - ID_B1 SINE B4 -12 212 2 8 1447 353 204 56 22 chr12 113026834 113026924 -8230606 - PB1D10 SINE Alu -8 109 17 8 1447 1115 89 0 14 chr12 113027106 113027242 -8230288 + B1_Mus2 SINE Alu 2 137 -10 8 1447 215 31 0 30 chr12 113027242 113027275 -8230255 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1447 1115 89 0 14 chr12 113027275 113027286 -8230244 + B1_Mus2 SINE Alu 138 147 0 8 1447 245 304 29 0 chr12 113029026 113029095 -8228435 - ID4 SINE ID -10 73 3 8 1447 416 216 61 26 chr12 113029095 113029209 -8228321 - PB1D7 SINE Alu -2 118 1 8 1447 336 48 0 0 chr12 113029235 113029277 -8228253 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1447 237 276 0 0 chr12 113029297 113029355 -8228175 - BC1_Mm scRNA scRNA -85 67 10 8 1447 326 189 32 16 chr12 113029379 113029633 -8227897 + (CTCA)n Simple_repeat Simple_repeat 1 258 0 9 1447 497 191 82 0 chr12 113029644 113029754 -8227776 - B1_Mur1 SINE Alu -22 127 9 9 1447 294 189 27 13 chr12 113029757 113029832 -8227698 - B1_Mur4 SINE Alu -72 78 3 9 1447 213 39 0 0 chr12 113030524 113030550 -8226980 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1447 272 330 27 9 chr12 113030631 113030741 -8226789 - PB1D10 SINE Alu -5 112 1 9 1447 897 102 15 0 chr12 113030758 113030895 -8226635 - B1_Mur4 SINE Alu 0 150 12 9 1447 243 329 34 97 chr12 113030878 113030898 -8226632 - MT2B LTR ERVL -317 284 238 9 1447 426 229 55 0 chr12 113030898 113031007 -8226523 - PB1D9 SINE Alu 0 120 6 9 1447 243 329 34 97 chr12 113031007 113031053 -8226477 - MT2B LTR ERVL -317 237 121 9 1447 266 288 61 24 chr12 113031232 113031314 -8226216 + RSINE1 SINE B4 3 87 -78 9 1447 414 0 0 0 chr12 113031367 113031413 -8226117 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1447 324 298 14 47 chr12 113031800 113031939 -8225591 - MIRc SINE MIR -93 183 61 1 1447 27 0 0 0 chr12 113032469 113032496 -8225034 + GC_rich Low_complexity Low_complexity 1 27 0 1 1447 485 280 201 33 chr12 113034335 113034421 -8223109 + B4A SINE B4 7 106 -186 1 1447 381 22 0 0 chr12 113034421 113034467 -8223063 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1447 485 280 201 33 chr12 113034467 113034624 -8222906 + B4A SINE B4 107 290 -2 1 1447 203 268 18 0 chr12 113034633 113034689 -8222841 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1447 216 162 0 0 chr12 113036304 113036341 -8221189 + T-rich Low_complexity Low_complexity 3 39 0 1 1447 1136 35 21 14 chr12 113036342 113036485 -8221045 - B1_Mm SINE Alu -1 146 3 1 1447 435 287 9 9 chr12 113036577 113036693 -8220837 - PB1D10 SINE Alu 0 117 2 1 1447 632 172 16 0 chr12 113037315 113037437 -8220093 + B1_Mur2 SINE Alu 26 149 0 1 1447 244 289 10 62 chr12 113037848 113037944 -8219586 - B1_Mur1 SINE Alu 0 149 59 1 1447 1583 42 21 0 chr12 113038004 113038195 -8219335 - B2_Mm2 SINE B2 0 195 1 1 1447 742 121 73 0 chr12 113040277 113040401 -8217129 + B1_Mus2 SINE Alu 2 134 -13 1 1447 347 238 67 85 chr12 113040830 113040870 -8216660 - RSINE1 SINE B4 0 165 135 1 1447 180 0 0 0 chr12 113040870 113040890 -8216640 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1447 347 238 67 85 chr12 113040890 113041014 -8216516 - RSINE1 SINE B4 -31 134 4 1 1447 237 254 95 0 chr12 113041533 113041596 -8215934 + ID4 SINE ID 8 76 -7 1 1447 699 46 0 0 chr12 113042241 113042328 -8215202 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1447 539 53 0 13 chr12 113043595 113043671 -8213859 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1447 234 0 0 0 chr12 113044553 113044579 -8212951 + (CTG)n Simple_repeat Simple_repeat 1 26 0 1 1447 23 33 0 0 chr12 113044884 113044914 -8212616 + AT_rich Low_complexity Low_complexity 1 30 0 1 1447 30 0 0 0 chr12 113044951 113044981 -8212549 + AT_rich Low_complexity Low_complexity 1 30 0 1 1447 250 158 88 0 chr12 113044988 113045045 -8212485 - RSINE1 SINE B4 -9 156 95 1 1447 1255 55 0 0 chr12 113045446 113045592 -8211938 + B1_Mus1 SINE Alu 3 148 0 1 1447 696 220 28 14 chr12 113045637 113045780 -8211750 - B1F2 SINE Alu -4 145 1 1 1447 357 248 119 8 chr12 113046953 113047071 -8210459 - B1F2 SINE Alu -5 144 14 1 1447 879 117 26 58 chr12 113047415 113047569 -8209961 - B1_Mur3 SINE Alu 0 149 1 1 1447 234 0 0 0 chr12 113048337 113048363 -8209167 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1447 462 215 234 0 chr12 113048501 113048608 -8208922 + B1_Mur2 SINE Alu 4 135 -14 1 1447 521 211 9 28 chr12 113049467 113049574 -8207956 + PB1 SINE Alu 21 125 -2 1 1447 706 110 17 17 chr12 113049887 113050007 -8207523 + B1F2 SINE Alu 29 148 -1 1 1447 229 263 147 0 chr12 113051031 113051126 -8206404 + B4A SINE B4 89 197 -95 1 1447 279 253 36 0 chr12 113051169 113051252 -8206278 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1447 340 193 96 0 chr12 113051676 113051759 -8205771 + PB1D7 SINE Alu 1 91 -29 1 1447 610 253 31 25 chr12 113053058 113053220 -8204310 - RSINE1 SINE B4 0 165 3 1 1447 223 148 36 18 chr12 113053245 113053300 -8204230 + CT-rich Low_complexity Low_complexity 1 56 0 1 1447 212 171 329 0 chr12 113053384 113053454 -8204076 - PB1D10 SINE Alu -23 94 2 1 1447 424 114 53 0 chr12 113053922 113054004 -8203526 + B1F1 SINE Alu 51 149 0 1 1447 285 29 0 0 chr12 113054011 113054045 -8203485 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1447 216 0 0 0 chr12 113055102 113055126 -8202404 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1447 849 224 96 10 chr12 113055161 113055359 -8202171 - B3 SINE B2 0 216 2 1 1447 898 252 70 15 chr12 113055410 113055680 -8201850 - B4A SINE B4 -6 286 2 1 1447 1677 131 166 0 chr12 113055770 113056090 -8201440 - ORR1B1 LTR MaLR -8 386 14 1 1447 343 275 107 47 chr12 113056087 113056236 -8201294 - RSINE1 SINE B4 -6 159 2 1 1447 315 278 27 126 chr12 113056259 113056370 -8201160 - PB1 SINE Alu -3 124 25 1 1447 1126 175 44 0 chr12 113056536 113056742 -8200788 - B3 SINE B2 0 216 2 1 1447 360 0 0 0 chr12 113057285 113057325 -8200205 + (GCCTG)n Simple_repeat Simple_repeat 1 40 0 1 1447 206 205 0 0 chr12 113057613 113057652 -8199878 + C-rich Low_complexity Low_complexity 1 39 0 1 1447 846 188 28 0 chr12 113057796 113057940 -8199590 - B1_Mur4 SINE Alu 0 150 3 1 1447 376 262 132 23 chr12 113058045 113058174 -8199356 - ID_B1 SINE B4 0 224 82 1 1447 223 286 0 18 chr12 113058246 113058303 -8199227 + B4A SINE B4 2 57 -235 1 1447 812 78 17 0 chr12 113058640 113058755 -8198775 - B1_Mus1 SINE Alu -1 147 31 1 1447 508 238 185 12 chr12 113059177 113059339 -8198191 + B4 SINE B4 90 279 -13 1 1447 901 246 30 0 chr12 113062658 113062857 -8194673 - B3 SINE B2 -11 205 1 1 1447 803 312 0 0 chr12 113064413 113064599 -8192931 - B3 SINE B2 -30 186 1 1 1447 207 167 0 0 chr12 113064832 113064868 -8192662 + C-rich Low_complexity Low_complexity 4 39 0 1 1447 254 250 94 94 chr12 113068010 113068138 -8189392 + BC1_Mm scRNA scRNA 3 130 -22 1 1447 1283 47 0 0 chr12 113068906 113069054 -8188476 - B1_Mus1 SINE Alu 0 148 1 1 1447 261 279 0 0 chr12 113069432 113069493 -8188037 - B1F SINE Alu -10 139 79 1 1447 309 193 119 12 chr12 113069953 113070037 -8187493 - B3 SINE B2 -1 215 123 1 1447 564 193 101 27 chr12 113070078 113070227 -8187303 - Lx5 LINE L1 -3 7047 6888 1 1447 204 125 0 0 chr12 113075429 113075461 -8182069 + (GGGGA)n Simple_repeat Simple_repeat 1 32 0 1 1447 576 86 118 0 chr12 113075567 113075660 -8181870 - B1_Mus2 SINE Alu -1 146 43 1 1447 820 141 52 0 chr12 113075926 113076061 -8181469 + B1_Mur2 SINE Alu 1 142 -7 1 1447 399 257 67 29 chr12 113076257 113076361 -8181169 - B1F1 SINE Alu -8 109 2 1 1447 243 317 97 19 chr12 113076272 113076375 -8181155 - B4 SINE B4 -113 179 69 1 1447 480 258 73 32 chr12 113077622 113077746 -8179784 - RSINE1 SINE B4 -2 163 35 1 1447 597 219 202 5 chr12 113077790 113077978 -8179552 + MLT2D LTR ERVL 2 226 -188 1 1447 709 209 184 0 chr12 113078009 113078167 -8179363 + B3 SINE B2 3 189 -27 1 1447 303 284 184 10 chr12 113079068 113079171 -8178359 - PB1D10 SINE Alu -4 123 3 1 1447 544 207 9 18 chr12 113079560 113079673 -8177857 + PB1D9 SINE Alu 9 120 0 1 1447 438 243 55 35 chr12 113079830 113079975 -8177555 + B1F SINE Alu 1 148 -1 1 1447 929 126 14 0 chr12 113080042 113080185 -8177345 + B1_Mur4 SINE Alu 5 149 -1 1 1447 785 177 0 26 chr12 113080601 113080752 -8176778 + B1_Mus2 SINE Alu 1 147 0 1 1447 268 176 29 0 chr12 113080755 113080823 -8176707 + GA-rich Low_complexity Low_complexity 4 73 0 1 1447 612 262 56 0 chr12 113081350 113081510 -8176020 - B3 SINE B2 -46 170 2 1 1447 231 295 0 95 chr12 113082190 113082295 -8175235 - Tigger6b DNA MER2_type -1350 247 153 1 1447 255 268 15 81 chr12 113082391 113082423 -8175107 - ID_B1 SINE B4 -97 195 101 1 1447 301 268 44 44 chr12 113082423 113082513 -8175017 - PB1D10 SINE Alu -26 91 2 1 1447 569 159 0 31 chr12 113083790 113083887 -8173643 - B1_Mur3 SINE Alu -16 133 40 1 1447 247 128 0 49 chr12 113083911 113083952 -8173578 - PB1D9 SINE Alu -61 59 21 1 1447 459 0 0 0 chr12 113085578 113085629 -8171901 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1447 606 28 0 0 chr12 113085629 113085700 -8171830 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 1447 576 144 445 0 chr12 113085758 113085904 -8171626 - B3 SINE B2 -5 211 1 1 1447 1135 49 0 0 chr12 113086072 113086214 -8171316 - B1_Mus1 SINE Alu 0 148 7 1 1447 597 310 170 44 chr12 113086520 113087061 -8170469 + Lx8 LINE L1 6614 7222 -251 1 1447 3673 33 28 0 chr12 113087135 113087559 -8169971 + RLTR10C LTR ERVK 1 436 0 1 1447 549 110 0 0 chr12 113087765 113087847 -8169683 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1447 896 113 0 36 chr12 113088890 113089028 -8168502 - B2_Mm2 SINE B2 -61 134 2 1 1447 1300 108 32 0 chr12 113089237 113089422 -8168108 - B2_Mm1t SINE B2 -1 192 2 1 1447 981 202 118 10 chr12 113089500 113089695 -8167835 + B3 SINE B2 1 216 0 1 1447 270 226 198 31 chr12 113089727 113089823 -8167707 + PB1D9 SINE Alu 2 113 -7 1 1447 21 57 0 0 chr12 113089948 113089983 -8167547 + AT_rich Low_complexity Low_complexity 1 35 0 1 1447 332 238 42 17 chr12 113090345 113090465 -8167065 - L1M5 LINE L1 -746 5434 5304 1 1447 381 183 217 0 chr12 113090466 113090581 -8166949 + Lx7 LINE L1 7166 7305 -391 1 1447 24 32 0 0 chr12 113090755 113090786 -8166744 + AT_rich Low_complexity Low_complexity 1 31 0 1 1447 348 256 179 6 chr12 113091642 113091815 -8165715 + L1M4 LINE L1 4821 5023 -1123 1 1447 1141 172 34 0 chr12 113092527 113092731 -8164799 - B3 SINE B2 -5 211 1 1 1447 257 262 14 58 chr12 113092936 113093005 -8164525 + RSINE1 SINE B4 19 84 -81 1 1447 564 29 0 0 chr12 113093037 113093107 -8164423 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1447 470 276 52 7 chr12 113093284 113093419 -8164111 - B1_Mur2 SINE Alu -8 141 1 1 1447 553 253 45 18 chr12 113093446 113093600 -8163930 + ID_B1 SINE B4 84 248 -44 1 1447 228 100 0 0 chr12 113093601 113093641 -8163889 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1447 273 140 0 0 chr12 113093646 113093703 -8163827 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 2 1447 1374 217 64 62 chr12 113094193 113094566 -8162964 + ORR1D1 LTR MaLR 1 374 0 2 1447 336 299 0 0 chr12 113094647 113094724 -8162806 - B1_Mur3 SINE Alu -72 77 1 2 1447 605 325 108 5 chr12 113094723 113094918 -8162612 - ID_B1 SINE B4 -1 223 9 2 1447 796 230 96 40 chr12 113095124 113095323 -8162207 + B3 SINE B2 1 210 -6 2 1447 190 262 0 0 chr12 113095646 113095688 -8161842 - MIR SINE MIR -107 101 60 2 1447 1325 72 39 0 chr12 113095716 113095897 -8161633 - B2_Mm1t SINE B2 -4 189 2 2 1447 690 236 61 0 chr12 113096186 113096351 -8161179 + B4 SINE B4 114 288 -4 2 1447 948 251 54 65 chr12 113096532 113096869 -8160661 + MTEa LTR MaLR 19 349 -30 2 1447 574 182 118 83 chr12 113096932 113097076 -8160454 - B1F2 SINE Alu 0 149 1 2 1447 579 228 123 6 chr12 113097097 113097260 -8160270 - B3A SINE B2 -16 182 1 2 1447 222 311 157 15 chr12 113097894 113098028 -8159502 - MIRc SINE MIR -67 201 49 2 1447 21 0 0 0 chr12 113098658 113098679 -8158851 + AT_rich Low_complexity Low_complexity 1 21 0 2 1447 479 294 0 70 chr12 113099444 113099601 -8157929 - B3A SINE B2 -44 154 9 2 1447 1355 91 27 0 chr12 113099695 113099881 -8157649 + B2_Mm2 SINE B2 1 191 -4 2 1447 938 186 83 25 chr12 113100022 113100226 -8157304 + B3 SINE B2 1 216 0 2 1447 200 122 0 24 chr12 113100227 113100269 -8157261 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 1447 297 257 0 0 chr12 113100298 113100368 -8157162 + (CAGG)n Simple_repeat Simple_repeat 2 71 0 2 1447 667 152 0 19 chr12 113100369 113100476 -8157054 + B1_Mur1 SINE Alu 45 149 0 2 1447 5010 158 123 27 chr12 113100485 113101242 -8156288 + RMER12 LTR ERVK 1 792 -530 2 1447 210 91 0 0 chr12 113101242 113101275 -8156255 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1447 5010 158 123 27 chr12 113101275 113101373 -8156157 + RMER12 LTR ERVK 793 887 -435 2 1447 360 0 0 0 chr12 113101373 113101413 -8156117 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1447 438 20 0 0 chr12 113101413 113101463 -8156067 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1447 5010 158 123 27 chr12 113101463 113101595 -8155935 + RMER12 LTR ERVK 888 1084 -238 2 1447 403 189 134 67 chr12 113101588 113101707 -8155823 + RMER12 LTR ERVK 1195 1321 -1 2 1447 342 167 326 20 chr12 113101792 113101890 -8155640 + B1_Mm SINE Alu 1 128 -19 2 1447 543 31 0 0 chr12 113101894 113101959 -8155571 + (GGGA)n Simple_repeat Simple_repeat 2 66 0 2 1447 1351 45 80 0 chr12 113102116 113102292 -8155238 - B2_Mm1a SINE B2 -2 191 2 2 1447 1058 99 42 0 chr12 113102827 113102969 -8154561 + B1_Mus1 SINE Alu 1 148 0 2 1447 261 0 0 0 chr12 113102969 113102998 -8154532 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1447 454 120 13 0 chr12 113103047 113103122 -8154408 - B1_Mur1 SINE Alu 0 149 74 2 1447 804 233 92 0 chr12 113103118 113103281 -8154249 - B3 SINE B2 -31 185 8 2 1447 242 164 18 0 chr12 113103309 113103364 -8154166 + (TATG)n Simple_repeat Simple_repeat 4 59 0 2 1447 212 146 18 35 chr12 113103497 113103554 -8153976 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 1447 599 165 18 18 chr12 113103568 113103679 -8153851 - PB1D9 SINE Alu -9 111 1 2 1447 501 227 27 0 chr12 113103704 113103814 -8153716 - PB1D9 SINE Alu -7 113 1 2 1447 495 60 0 0 chr12 113104818 113104885 -8152645 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1447 704 290 0 6 chr12 113105263 113105440 -8152090 - B3A SINE B2 -18 180 5 2 1447 546 219 60 17 chr12 113105504 113105620 -8151910 + B1F SINE Alu 18 138 -11 2 1447 238 253 69 0 chr12 113107058 113107145 -8150385 - L1MD3 LINE L1 -311 7684 7592 2 1447 465 292 116 68 chr12 113107390 113107489 -8150041 - L1MDa LINE L1 -2337 4200 4103 2 1447 565 295 75 0 chr12 113107489 113107689 -8149841 + ID_B1 SINE B4 1 215 -9 2 1447 465 292 116 68 chr12 113107689 113107839 -8149691 - L1MDa LINE L1 -2435 4102 3939 2 1447 200 250 0 18 chr12 113108114 113108171 -8149359 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2 1447 301 257 37 19 chr12 113108176 113108283 -8149247 - PB1D10 SINE Alu -8 109 1 2 1447 769 246 63 19 chr12 113108347 113108554 -8148976 - B3 SINE B2 0 216 1 2 1447 446 293 83 33 chr12 113108869 113109049 -8148481 + Charlie6 DNA MER1_type 2425 2613 -887 2 1447 513 253 117 53 chr12 113109094 113109265 -8148265 + B3A SINE B2 1 182 -16 2 1447 289 319 64 14 chr12 113109527 113109667 -8147863 + YREP_Mm Unknown Unknown 156 302 -1510 2 1447 670 165 52 0 chr12 113109545 113109660 -8147870 - ID_B1 SINE B4 -1 223 103 2 1447 302 191 44 234 chr12 113109660 113109682 -8147848 - PB1D9 SINE Alu -2 118 8 2 1447 311 281 61 82 chr12 113109693 113109762 -8147768 - L1MDa LINE L1 -4129 2504 2436 2 1447 1168 62 7 7 chr12 113109762 113109908 -8147622 - B1_Mus2 SINE Alu 0 147 2 2 1447 311 281 61 82 chr12 113109908 113109985 -8147545 - L1MDa LINE L1 -4198 2435 2361 2 1447 379 211 26 13 chr12 113110118 113110195 -8147335 + ID4_ SINE ID 4 81 -2 2 1447 567 298 46 0 chr12 113110243 113110394 -8147136 + RSINE1 SINE B4 3 160 -5 2 1447 1248 48 0 6 chr12 113110721 113110889 -8146641 - L1Md_F3 LINE L1 0 6584 6418 2 1447 888 213 80 20 chr12 113110935 113111136 -8146394 + B3 SINE B2 3 215 -1 2 1447 447 262 37 86 chr12 113111167 113111330 -8146200 + RSINE1 SINE B4 4 158 -7 2 1447 1253 48 0 0 chr12 113111426 113111573 -8145957 + B1_Mus1 SINE Alu 2 148 0 2 1447 261 139 0 0 chr12 113111573 113111616 -8145914 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1447 340 335 153 67 chr12 113111677 113111736 -8145794 + L1ME1 LINE L1 4933 5004 -1142 2 1447 445 245 131 87 chr12 113111736 113111898 -8145632 - B3 SINE B2 0 216 43 2 1447 1218 35 0 14 chr12 113111898 113112043 -8145487 - B1_Mus1 SINE Alu -1 147 5 2 1447 445 245 131 87 chr12 113112043 113112086 -8145444 - B3 SINE B2 -174 42 2 2 1447 340 335 153 67 chr12 113112086 113112432 -8145098 + L1ME1 LINE L1 5005 5373 -773 2 1447 952 152 178 0 chr12 113112607 113112798 -8144732 - URR1A DNA MER1_type -1 225 1 2 1447 647 248 7 14 chr12 113112861 113113000 -8144530 + B1_Mur1 SINE Alu 2 139 -10 2 1447 365 312 85 61 chr12 113113039 113113159 -8144371 + B4 SINE B4 76 200 -92 2 1447 490 257 0 26 chr12 113113159 113113275 -8144255 + PB1D9 SINE Alu 4 116 -4 2 1447 365 312 85 61 chr12 113113275 113113366 -8144164 + B4 SINE B4 201 292 0 2 1447 249 321 9 35 chr12 113113368 113113481 -8144049 + (CA)n Simple_repeat Simple_repeat 1 110 0 2 1447 827 269 57 24 chr12 113113489 113113821 -8143709 + L1ME1 LINE L1 5461 5803 -381 2 1447 315 0 0 0 chr12 113113869 113113904 -8143626 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1447 2617 181 123 24 chr12 113114064 113114648 -8142882 + RLTR26 LTR ERVK 1 642 0 2 1447 232 333 0 0 chr12 113114654 113114729 -8142801 + L1ME1 LINE L1 6062 6136 -43 2 1447 505 146 177 0 chr12 113114734 113114830 -8142700 - PB1D9 SINE Alu -7 113 1 2 1448 1329 87 49 0 chr12 113115147 113115331 -8142199 + B2_Mm2 SINE B2 1 193 -2 2 1448 930 239 5 19 chr12 113115580 113115793 -8141737 + B3 SINE B2 3 212 -4 2 1448 203 364 57 0 chr12 113116093 113116181 -8141349 + L2a LINE L2 3316 3408 -18 2 1448 1607 32 11 0 chr12 113116283 113116473 -8141057 + B2_Mm1a SINE B2 2 193 0 2 1448 403 239 0 61 chr12 113116725 113116823 -8140707 + ID_B1 SINE B4 129 220 -4 2 1448 626 156 15 83 chr12 113116928 113117061 -8140469 + B1_Mur3 SINE Alu 25 148 -1 2 1448 420 258 7 108 chr12 113117450 113117598 -8139932 + B1F SINE Alu 14 146 -3 2 1448 1371 255 125 18 chr12 113117622 113118192 -8139338 + L1MC2 LINE L1 5688 6318 -26 2 1448 2057 106 6 33 chr12 113118193 113118524 -8139006 + L1_Mus4 LINE L1 6315 6636 0 2 1448 543 85 0 0 chr12 113118641 113118723 -8138807 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1448 384 88 0 0 chr12 113118723 113118780 -8138750 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1448 247 286 91 54 chr12 113119019 113119169 -8138361 - MIRb SINE MIR -95 173 15 2 1448 246 261 61 88 chr12 113119466 113119613 -8137917 - YREP_Mm Unknown Unknown -1489 323 181 2 1448 1028 48 0 0 chr12 113119490 113119616 -8137914 + B1_Mus1 SINE Alu 22 147 -1 2 1448 456 281 96 34 chr12 113119799 113119976 -8137554 - B3A SINE B2 -9 189 2 2 1448 976 36 257 7 chr12 113120005 113120145 -8137385 - B2_Mm2 SINE B2 -19 176 2 2 1448 987 61 38 0 chr12 113120206 113120338 -8137192 + B1_Mus1 SINE Alu 10 146 -2 2 1448 463 232 167 34 chr12 113120341 113120519 -8137011 + L1MB5 LINE L1 5887 6100 -74 2 1448 382 241 20 24 chr12 113120634 113120747 -8136783 + PB1D7 SINE Alu 1 114 -6 2 1448 480 224 228 6 chr12 113121482 113121653 -8135877 + B3 SINE B2 1 209 -7 2 1448 26 30 0 0 chr12 113121655 113121688 -8135842 + AT_rich Low_complexity Low_complexity 1 33 0 2 1448 861 170 7 0 chr12 113121766 113121913 -8135617 + B1_Mus1 SINE Alu 1 148 0 2 1448 231 109 43 21 chr12 113121920 113121967 -8135563 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2 1448 331 233 63 76 chr12 113122530 113122609 -8134921 - ID4_ SINE ID -3 80 3 2 1448 386 236 32 11 chr12 113122615 113122709 -8134821 - PB1D10 SINE Alu -8 109 14 2 1448 253 307 66 33 chr12 113122773 113122793 -8134737 + B4 SINE B4 65 156 -134 2 1448 297 290 14 0 chr12 113122793 113122862 -8134668 + PB1D9 SINE Alu 3 72 -48 2 1448 270 235 272 0 chr12 113123447 113123528 -8134002 + PB1D10 SINE Alu 3 105 -12 2 1448 480 283 79 14 chr12 113123963 113124103 -8133427 + RSINE1 SINE B4 17 165 0 2 1448 321 26 0 0 chr12 113124526 113124564 -8132966 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1448 282 272 186 35 chr12 113124913 113125072 -8132458 - MIR3 SINE MIR -12 196 20 2 1448 450 213 74 0 chr12 113125167 113125275 -8132255 + PB1D9 SINE Alu 5 120 0 2 1448 185 237 0 17 chr12 113125278 113125338 -8132192 + GA-rich Low_complexity Low_complexity 2 60 0 2 1448 839 216 40 0 chr12 113125343 113125491 -8132039 + B3 SINE B2 53 206 -10 3 1448 245 139 0 0 chr12 113125505 113125541 -8131989 + PB1D10 SINE Alu 65 100 -17 3 1448 411 113 0 0 chr12 113125798 113125860 -8131670 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 1448 2427 61 149 14 chr12 113125866 113126215 -8131315 - MTA_Mm LTR MaLR 0 396 1 3 1448 713 241 61 25 chr12 113126459 113126655 -8130875 - B3 SINE B2 -12 204 2 3 1448 484 266 43 0 chr12 113127087 113127181 -8130349 + B1F1 SINE Alu 1 98 -51 3 1448 325 239 15 0 chr12 113127189 113127256 -8130274 + ID4 SINE ID 3 70 -13 3 1448 607 296 25 39 chr12 113127520 113127732 -8129798 - MIRb SINE MIR -43 225 9 3 1448 1429 77 16 0 chr12 113128062 113128245 -8129285 - B2_Mm2 SINE B2 -8 187 2 3 1448 579 157 157 0 chr12 113128278 113128393 -8129137 - B1_Mus2 SINE Alu 0 147 15 3 1448 318 26 0 0 chr12 113128760 113128799 -8128731 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1448 452 198 0 0 chr12 113128813 113128894 -8128636 - B1_Mus1 SINE Alu -65 83 3 3 1448 996 220 27 108 chr12 113129076 113129448 -8128082 + RLTR15 LTR ERVK 1 342 -17 3 1448 516 241 7 62 chr12 113129459 113129605 -8127925 + B3A SINE B2 60 197 -1 3 1448 849 175 42 0 chr12 113129681 113129824 -8127706 - B1_Mur3 SINE Alu 0 149 1 3 1448 216 0 0 0 chr12 113129829 113129853 -8127677 + (CATA)n Simple_repeat Simple_repeat 3 26 0 3 1448 3839 212 31 164 chr12 113129853 113131373 -8126157 - RMER1A Other Other -14 1016 1 3 1448 685 222 28 7 chr12 113131677 113131822 -8125708 - B1_Mur1 SINE Alu -1 148 1 3 1448 354 247 85 11 chr12 113131872 113131966 -8125564 - B3 SINE B2 -16 200 100 3 1448 264 282 214 36 chr12 113132299 113132626 -8124904 - L2c LINE L2 -1 3386 3015 3 1448 468 280 142 9 chr12 113133281 113133483 -8124047 - MIRb SINE MIR -23 245 5 3 1448 445 192 8 111 chr12 113133520 113133534 -8123996 + MT2B LTR ERVL 155 156 -445 3 1448 646 186 19 13 chr12 113133534 113133656 -8123874 + B1_Mur2 SINE Alu 2 115 -5 3 1448 1167 84 0 6 chr12 113133768 113133924 -8123606 + B2_Mm2 SINE B2 3 157 -38 3 1448 236 30 30 0 chr12 113133924 113133957 -8123573 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3 1448 335 302 214 9 chr12 113133973 113134197 -8123333 + MER33 DNA MER1_type 54 323 -1 3 1448 277 275 75 38 chr12 113135197 113135303 -8122227 - L2a LINE L2 -2 3424 3315 3 1448 396 322 190 9 chr12 113135650 113135866 -8121664 - MIR SINE MIR -2 260 6 3 1448 239 161 0 18 chr12 113135936 113135993 -8121537 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1448 209 161 0 0 chr12 113136024 113136055 -8121475 + polypurine Low_complexity Low_complexity 1 31 0 3 1448 239 260 0 7 chr12 113136475 113136626 -8120904 + (CA)n Simple_repeat Simple_repeat 1 150 0 3 1448 420 290 76 0 chr12 113136793 113136924 -8120606 - RSINE1 SINE B4 -14 151 11 3 1448 313 333 50 10 chr12 113137160 113137260 -8120270 - L2b LINE L2 -1 3374 3271 3 1448 2215 182 28 10 chr12 113137787 113138187 -8119343 - MTD LTR MaLR -12 407 1 3 1448 381 326 29 15 chr12 113138187 113138319 -8119211 + RSINE1 SINE B4 22 155 -10 3 1448 915 80 0 0 chr12 113138339 113138464 -8119066 + (TC)n Simple_repeat Simple_repeat 1 125 0 3 1448 252 0 0 0 chr12 113138464 113138491 -8119039 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1448 397 244 0 2 chr12 113138637 113138723 -8118807 + B1F2 SINE Alu 3 87 -33 3 1448 320 267 58 8 chr12 113138910 113139031 -8118499 + L2a LINE L2 2927 3053 -373 3 1448 256 312 39 39 chr12 113139801 113139931 -8117599 + MIRb SINE MIR 9 138 -130 3 1448 198 301 104 56 chr12 113140480 113140624 -8116906 - MIR3 SINE MIR -38 170 20 3 1448 533 248 28 55 chr12 113141175 113141320 -8116210 - B3 SINE B2 -3 213 73 3 1448 6019 222 104 12 chr12 113141384 113142839 -8114691 - Lx7 LINE L1 -495 7201 5613 3 1448 371 276 80 130 chr12 113142925 113143087 -8114443 + B4 SINE B4 64 217 -75 3 1448 632 229 67 22 chr12 113142961 113143095 -8114435 + B1_Mur1 SINE Alu 6 145 -4 3 1448 673 203 8 30 chr12 113143132 113143264 -8114266 - B1_Mur4 SINE Alu 0 150 22 3 1448 237 321 155 0 chr12 113143527 113143611 -8113919 + MT2B LTR ERVL 142 238 -363 3 1448 475 214 93 46 chr12 113143564 113143672 -8113858 + B1_Mus2 SINE Alu 35 147 0 3 1448 660 270 19 13 chr12 113143743 113143897 -8113633 + RSINE1 SINE B4 11 165 0 3 1448 303 288 160 0 chr12 113144837 113144962 -8112568 - MIRc SINE MIR -110 158 14 3 1448 274 245 19 96 chr12 113145252 113145356 -8112174 + ID4 SINE ID 1 97 -55 3 1448 300 223 19 46 chr12 113145898 113146006 -8111524 + (CCCG)n Simple_repeat Simple_repeat 3 107 0 3 1448 22 35 0 0 chr12 113146017 113146046 -8111484 + GC_rich Low_complexity Low_complexity 1 29 0 3 1448 222 241 18 65 chr12 113146081 113146250 -8111280 + (CCGCG)n Simple_repeat Simple_repeat 4 164 0 3 1448 213 164 40 40 chr12 113146227 113146303 -8111227 + (CCG)n Simple_repeat Simple_repeat 2 77 0 3 1448 267 297 167 13 chr12 113147498 113147648 -8109882 + MIR SINE MIR 12 184 -78 3 1448 423 331 27 7 chr12 113147825 113147971 -8109559 + MIR3 SINE MIR 39 187 -21 3 1448 850 203 82 28 chr12 113148115 113148297 -8109233 + B3 SINE B2 1 192 -24 3 1448 576 191 17 9 chr12 113148452 113148568 -8108962 - B3A SINE B2 -81 117 1 3 1448 595 332 15 5 chr12 113149489 113149686 -8107844 - Tigger5 DNA MER2_type -2207 199 1 3 1448 208 158 26 0 chr12 113149734 113149772 -8107758 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1448 971 158 58 48 chr12 113149850 113150056 -8107474 - B3 SINE B2 -6 210 3 3 1448 401 303 65 19 chr12 113150057 113150212 -8107318 - B4 SINE B4 -63 229 68 3 1448 911 157 0 7 chr12 113150218 113150366 -8107164 - B1_Mus2 SINE Alu 0 147 1 3 1448 1489 169 81 10 chr12 113150418 113150715 -8106815 - MTD LTR MaLR -59 320 13 3 1448 341 314 42 28 chr12 113150738 113150882 -8106648 - L1MC3 LINE L1 -397 7388 7243 3 1448 21 0 0 0 chr12 113150929 113150950 -8106580 + AT_rich Low_complexity Low_complexity 1 21 0 3 1448 729 308 68 73 chr12 113150958 113151343 -8106187 - MLT1B LTR MaLR -5 385 3 3 1448 294 313 40 10 chr12 113151681 113151781 -8105749 - L2b LINE L2 -36 3339 3237 3 1448 585 0 0 0 chr12 113152601 113152666 -8104864 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1448 1271 40 0 0 chr12 113152792 113152940 -8104590 + B1_Mus1 SINE Alu 1 148 0 3 1448 254 342 13 0 chr12 113153001 113153080 -8104450 + Lx8 LINE L1 6693 6772 -701 3 1448 180 77 0 0 chr12 113153094 113153120 -8104410 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1448 1513 213 89 47 chr12 113153127 113153302 -8104228 + MTD LTR MaLR 22 195 -224 3 1448 284 0 28 0 chr12 113153302 113153338 -8104192 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 1448 1513 213 89 47 chr12 113153338 113153542 -8103988 + MTD LTR MaLR 196 416 -3 3 1448 307 274 132 0 chr12 113153603 113153709 -8103821 + Lx8 LINE L1 6837 6956 -517 3 1448 423 272 0 0 chr12 113153711 113153847 -8103683 + (CA)n Simple_repeat Simple_repeat 1 136 0 3 1448 542 222 354 9 chr12 113153867 113154090 -8103440 + Lx8 LINE L1 7011 7310 -163 3 1448 459 0 0 0 chr12 113154429 113154480 -8103050 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1448 227 324 99 43 chr12 113154811 113155043 -8102487 - LTR33 LTR ERVL -4 511 267 3 1448 24 0 0 0 chr12 113155563 113155587 -8101943 + AT_rich Low_complexity Low_complexity 1 24 0 3 1448 619 167 10 0 chr12 113155598 113155694 -8101836 - B1_Mus1 SINE Alu -46 102 6 3 1448 437 280 38 53 chr12 113155601 113155733 -8101797 - ID_B1 SINE B4 -46 178 49 3 1448 265 235 15 0 chr12 113155868 113155936 -8101594 - ORR1E LTR MaLR -290 69 1 3 1448 700 349 32 35 chr12 113155992 113156331 -8101199 + MLT1A0 LTR MaLR 5 342 -23 3 1448 815 148 67 0 chr12 113156337 113156472 -8101058 - B1F2 SINE Alu -5 144 1 3 1448 367 279 53 18 chr12 113156478 113156591 -8100939 - PB1D10 SINE Alu 0 117 1 3 1448 225 65 0 0 chr12 113157082 113157113 -8100417 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 3 1448 325 286 37 19 chr12 113158035 113158142 -8099388 + PB1D10 SINE Alu 2 110 -7 3 1448 248 236 93 82 chr12 113158162 113158259 -8099271 + MIR SINE MIR 98 195 -67 3 1448 232 200 31 0 chr12 113158788 113158853 -8098677 + CT-rich Low_complexity Low_complexity 1 67 0 3 1448 433 161 30 30 chr12 113158870 113159037 -8098493 + (CTCA)n Simple_repeat Simple_repeat 4 170 0 3 1448 661 214 0 19 chr12 113159040 113159414 -8098116 + (CA)n Simple_repeat Simple_repeat 1 366 0 3 1448 231 196 0 0 chr12 113159470 113159516 -8098014 - PB1D9 SINE Alu 0 120 75 3 1448 632 264 56 141 chr12 113159481 113159785 -8097745 + MTEa LTR MaLR 101 378 -1 3 1448 429 20 0 0 chr12 113159791 113159841 -8097689 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1448 298 328 47 16 chr12 113160030 113160157 -8097373 + B1F2 SINE Alu 14 144 -5 3 1448 775 221 40 45 chr12 113160175 113160374 -8097156 + B3A SINE B2 1 198 0 3 1448 447 19 0 0 chr12 113160379 113160431 -8097099 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 3 1448 763 234 18 99 chr12 113160442 113160665 -8096865 + B3 SINE B2 1 205 -11 3 1448 377 273 0 54 chr12 113161109 113161202 -8096328 + B1F SINE Alu 3 90 -59 3 1448 644 225 41 21 chr12 113161375 113161520 -8096010 - RSINE1 SINE B4 -15 150 3 3 1448 479 233 104 15 chr12 113161596 113161731 -8095799 - B1F SINE Alu -2 147 1 4 1448 436 292 62 46 chr12 113161750 113161944 -8095586 + Tigger9a DNA Tigger 413 609 -123 4 1448 363 173 46 48 chr12 113161951 113162102 -8095428 + L1M4 LINE L1 5232 5383 -2612 4 1448 350 337 109 27 chr12 113162161 113162417 -8095113 + L1M4 LINE L1 5489 5765 -414 4 1448 482 278 0 0 chr12 113162419 113162534 -8094996 + PB1D7 SINE Alu 1 115 -5 4 1448 344 284 65 36 chr12 113162538 113162677 -8094853 + B4 SINE B4 3 145 -147 4 1448 218 152 0 0 chr12 113162702 113162735 -8094795 + ID4_ SINE ID 5 37 -46 4 1448 213 341 73 0 chr12 113162794 113162876 -8094654 + B1F2 SINE Alu 23 110 -39 4 1448 3115 75 2 2 chr12 113162885 113163285 -8094245 + MTB LTR MaLR 1 400 0 4 1448 621 202 0 0 chr12 113163333 113163437 -8094093 + RSINE1 SINE B4 5 108 -57 4 1448 29 28 0 0 chr12 113163461 113163497 -8094033 + AT_rich Low_complexity Low_complexity 1 36 0 4 1448 216 229 146 0 chr12 113163509 113163557 -8093973 + ID4_ SINE ID 15 69 -14 4 1448 248 311 19 71 chr12 113163565 113163708 -8093822 - MER45C DNA Tip100 -62 891 755 4 1448 367 370 24 63 chr12 113163847 113164052 -8093478 - MER45C DNA Tip100 -434 519 323 4 1448 769 153 0 8 chr12 113164649 113164768 -8092762 - B3 SINE B2 -98 118 1 4 1448 274 296 135 43 chr12 113164829 113164970 -8092560 - MIR SINE MIR -92 170 17 4 1448 1412 126 13 39 chr12 113166082 113166313 -8091217 - URR1B DNA MER1_type 0 225 1 4 1448 185 250 0 20 chr12 113166848 113166897 -8090633 + MIR SINE MIR 99 146 -62 4 1448 891 178 0 0 chr12 113167064 113167488 -8090042 + (TG)n Simple_repeat Simple_repeat 1 424 0 4 1448 508 271 127 78 chr12 113167506 113167750 -8089780 - B4A SINE B4 0 292 37 4 1448 927 212 210 10 chr12 113167757 113168057 -8089473 - MTD LTR MaLR -12 407 48 4 1448 460 141 21 11 chr12 113168058 113168151 -8089379 + C-rich Low_complexity Low_complexity 5 98 0 4 1448 189 196 0 0 chr12 113168654 113168700 -8088830 + CT-rich Low_complexity Low_complexity 3 48 0 4 1448 704 111 154 0 chr12 113169377 113169494 -8088036 + B1_Mus1 SINE Alu 1 135 -13 4 1448 498 33 0 0 chr12 113170113 113170173 -8087357 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1448 371 174 12 0 chr12 113170618 113170704 -8086826 + CT-rich Low_complexity Low_complexity 3 89 0 4 1448 317 184 168 30 chr12 113172745 113172846 -8084684 + RSINE1 SINE B4 3 117 -48 4 1448 814 157 8 0 chr12 113172849 113172983 -8084547 + B1_Mur1 SINE Alu 2 136 -13 4 1448 470 290 54 34 chr12 113173015 113173254 -8084276 + L1MB7 LINE L1 5883 6126 -58 4 1448 605 263 55 46 chr12 113173266 113173485 -8084045 + ID_B1 SINE B4 1 221 -3 4 1448 216 0 0 0 chr12 113173489 113173513 -8084017 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 4 1448 309 290 30 0 chr12 113173779 113173879 -8083651 - MIRb SINE MIR -49 219 117 4 1448 507 268 14 14 chr12 113173899 113174039 -8083491 + B1F SINE Alu 6 145 -4 4 1448 818 220 33 5 chr12 113174043 113174221 -8083309 + B3 SINE B2 1 183 -33 4 1448 207 0 0 0 chr12 113174221 113174244 -8083286 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1448 818 220 33 5 chr12 113174244 113174275 -8083255 + B3 SINE B2 184 215 -1 4 1448 759 241 34 10 chr12 113174310 113174519 -8083011 + ID_B1 SINE B4 2 215 -9 4 1448 267 226 108 42 chr12 113174679 113174799 -8082731 - ID_B1 SINE B4 -16 208 81 4 1448 509 269 54 0 chr12 113176813 113176943 -8080587 - ID_B1 SINE B4 -7 217 81 4 1448 650 147 0 9 chr12 113177818 113177928 -8079602 + B2_Mm2 SINE B2 9 117 -78 4 1448 411 170 20 10 chr12 113178157 113178258 -8079272 + GA-rich Low_complexity Low_complexity 6 107 0 4 1448 342 93 370 9 chr12 113179474 113179582 -8077948 - B2_Mm2 SINE B2 -2 193 47 4 1448 1098 109 23 6 chr12 113179629 113179804 -8077726 - B2_Mm1t SINE B2 -14 179 2 4 1448 453 279 12 175 chr12 113180563 113180667 -8076863 - B3 SINE B2 -3 213 121 4 1448 718 140 96 0 chr12 113180667 113180803 -8076727 + B1_Mur4 SINE Alu 1 149 -1 4 1448 526 258 3 46 chr12 113180803 113180950 -8076580 - B3A SINE B2 -96 120 3 4 1448 189 0 0 0 chr12 113180954 113180975 -8076555 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 4 1448 250 247 0 101 chr12 113180983 113181063 -8076467 - B1F SINE Alu -16 104 33 4 1448 372 277 70 42 chr12 113186300 113186443 -8071087 + B1F SINE Alu 1 147 -2 4 1448 779 156 28 7 chr12 113186652 113186794 -8070736 - B1_Mur1 SINE Alu -1 148 4 4 1448 225 0 0 0 chr12 113186988 113187013 -8070517 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1448 675 37 0 0 chr12 113188227 113188309 -8069221 + (GA)n Simple_repeat Simple_repeat 2 83 0 4 1448 318 207 75 65 chr12 113188339 113188432 -8069098 - RSINE1 SINE B4 -68 97 4 4 1448 334 177 183 0 chr12 113189223 113189327 -8068203 - B3A SINE B2 -71 124 2 4 1448 244 271 0 0 chr12 113190617 113190676 -8066854 + ID4_ SINE ID 22 80 -3 4 1448 281 331 84 0 chr12 113190803 113190957 -8066573 + MLT1M LTR MaLR 143 309 -363 4 1448 1433 200 96 17 chr12 113191118 113191474 -8066056 + ORR1C2 LTR MaLR 1 384 0 4 1448 1085 227 156 67 chr12 113191938 113192417 -8065113 + MT2A LTR ERVL 47 556 0 4 1448 567 231 81 13 chr12 113192649 113192798 -8064732 + B3 SINE B2 48 206 -10 4 1448 565 332 52 63 chr12 113192792 113192904 -8064626 - MER2 DNA MER2_type -61 284 185 4 1448 855 152 36 0 chr12 113192904 113193042 -8064488 + B1_Mur4 SINE Alu 1 143 -7 4 1448 565 332 52 63 chr12 113193042 113193215 -8064315 - MER2 DNA MER2_type -161 184 2 4 1448 257 190 61 37 chr12 113194688 113194770 -8062760 + MTEb LTR MaLR 279 362 -17 4 1448 773 150 53 0 chr12 113194797 113194930 -8062600 - B1_Mur2 SINE Alu -6 143 4 4 1448 492 263 9 9 chr12 113195024 113195139 -8062391 - RSINE1 SINE B4 -46 119 5 4 1448 181 163 139 0 chr12 113195156 113195199 -8062331 - L3 LINE CR1 -2160 2329 2281 4 1448 301 256 191 12 chr12 113195335 113195497 -8062033 - L1MD LINE L1 -2806 3340 3150 4 1448 1091 101 35 17 chr12 113195513 113195685 -8061845 - B2_Mm2 SINE B2 -19 176 2 4 1448 257 200 127 0 chr12 113195694 113195749 -8061781 - PB1D9 SINE Alu -58 62 1 4 1448 468 222 171 47 chr12 113196269 113196439 -8061091 + B3 SINE B2 1 191 -25 4 1448 214 300 120 0 chr12 113196680 113196780 -8060750 - PB1D10 SINE Alu -3 114 3 4 1448 3447 33 28 2 chr12 113197204 113197629 -8059901 + RLTR10C LTR ERVK 1 436 0 4 1448 243 302 105 0 chr12 113197678 113197764 -8059766 - B1_Mur1 SINE Alu -2 147 53 4 1448 405 254 8 47 chr12 113197820 113197928 -8059602 + MTD LTR MaLR 108 211 -210 4 1448 607 204 13 47 chr12 113197928 113198077 -8059453 + B1_Mur3 SINE Alu 2 145 -4 4 1448 405 254 8 47 chr12 113198077 113198096 -8059434 + MTD LTR MaLR 212 230 -191 4 1448 496 223 0 19 chr12 113198091 113198196 -8059334 + B3 SINE B2 28 130 -86 4 1448 754 119 246 17 chr12 113198265 113198444 -8059086 + MTD LTR MaLR 200 419 0 4 1448 342 257 90 18 chr12 113198494 113198605 -8058925 - B1F SINE Alu -30 119 1 4 1448 293 340 62 0 chr12 113198605 113198702 -8058828 - PB1D10 SINE Alu -5 112 10 4 1448 430 292 26 45 chr12 113198823 113198977 -8058553 - RSINE1 SINE B4 -11 154 4 4 1448 560 269 13 47 chr12 113198986 113199171 -8058359 - B3A SINE B2 -24 171 2 4 1448 280 206 38 76 chr12 113199195 113199274 -8058256 - PB1D7 SINE Alu 0 120 45 4 1448 304 93 0 0 chr12 113199869 113199912 -8057618 + B1_Mus1 SINE Alu 26 68 -80 4 1448 524 137 32 0 chr12 113200391 113200486 -8057044 - PB1D9 SINE Alu -1 119 22 4 1448 246 244 217 8 chr12 113200392 113200512 -8057018 - B4A SINE B4 -68 224 80 4 1448 328 220 191 9 chr12 113200951 113201061 -8056469 - L1MA4A LINE L1 -385 5918 5789 4 1448 470 231 109 27 chr12 113201161 113201308 -8056222 + RSINE1 SINE B4 3 161 -4 4 1448 309 241 117 48 chr12 113202719 113202834 -8054696 + B3 SINE B2 56 177 -39 4 1448 474 203 122 43 chr12 113203368 113203507 -8054023 + B1_Mur4 SINE Alu 1 150 0 4 1448 310 302 13 80 chr12 113203713 113203746 -8053784 + ID_B1 SINE B4 74 214 -10 4 1448 597 152 25 51 chr12 113203746 113203864 -8053666 + B1_Mus1 SINE Alu 24 138 -10 4 1448 307 278 56 0 chr12 113205386 113205476 -8052054 - MER81 DNA AcHobo -10 104 10 4 1448 333 229 121 30 chr12 113205512 113205602 -8051928 + B1F SINE Alu 13 112 -8 4 1448 780 199 0 0 chr12 113205602 113205748 -8051782 + B1_Mur2 SINE Alu 4 149 0 4 1448 242 277 98 32 chr12 113205781 113205904 -8051626 + B1_Mur2 SINE Alu 2 132 -17 4 1448 512 173 173 0 chr12 113205999 113206126 -8051404 - B1_Mur2 SINE Alu 0 149 1 4 1448 888 249 14 5 chr12 113206462 113206672 -8050858 - B3 SINE B2 -4 212 1 4 1448 384 259 32 3 chr12 113207065 113207179 -8050351 - B1F SINE Alu -2 118 1 4 1448 290 359 24 36 chr12 113207179 113207255 -8050275 - ID SINE ID -144 80 7 4 1448 303 267 87 93 chr12 113207258 113207419 -8050111 + L1MEg LINE L1 1004 1163 -4921 4 1448 377 195 0 12 chr12 113207456 113207539 -8049991 + ID4 SINE ID 2 83 0 4 1448 567 269 96 10 chr12 113207696 113207895 -8049635 + Charlie1b DNA MER1_type 59 274 -249 4 1448 820 223 15 35 chr12 113207895 113208095 -8049435 + B3A SINE B2 1 196 -2 4 1448 26 64 0 0 chr12 113208095 113208142 -8049388 + AT_rich Low_complexity Low_complexity 1 47 0 4 1448 629 276 247 41 chr12 113208248 113208588 -8048942 - MTD LTR MaLR 0 419 10 4 1448 391 188 117 19 chr12 113208603 113208706 -8048824 + Charlie1b DNA MER1_type 389 501 -22 4 1448 346 200 188 10 chr12 113208755 113208851 -8048679 - PB1D7 SINE Alu 0 120 8 4 1448 328 280 185 8 chr12 113209422 113209541 -8047989 - Lx5 LINE L1 -18 7032 6893 4 1448 378 315 40 7 chr12 113210228 113210378 -8047152 - ID_B1 SINE B4 0 224 70 5 1448 315 0 0 0 chr12 113210404 113210439 -8047091 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1448 294 274 35 12 chr12 113210473 113210558 -8046972 - RSINE1 SINE B4 -76 89 3 5 1448 322 260 0 0 chr12 113210620 113210697 -8046833 - B3A SINE B2 -76 122 46 5 1448 866 267 111 45 chr12 113210906 113211302 -8046228 - L1MC1 LINE L1 -289 6044 5623 5 1448 795 241 16 36 chr12 113211316 113211510 -8046020 - B3A SINE B2 -4 194 5 5 1448 349 315 46 0 chr12 113211715 113211823 -8045707 - PB1 SINE Alu -4 123 11 5 1448 210 342 0 38 chr12 113211762 113211841 -8045689 - B4A SINE B4 -136 156 81 5 1448 387 277 72 70 chr12 113211886 113212182 -8045348 - B4 SINE B4 -11 281 11 5 1448 580 227 15 15 chr12 113213033 113213167 -8044363 - B3 SINE B2 -38 178 45 5 1448 576 277 12 25 chr12 113213268 113213431 -8044099 - RSINE1 SINE B4 -1 164 4 5 1448 243 0 0 0 chr12 113213681 113213708 -8043822 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 5 1448 251 294 0 0 chr12 113213710 113213778 -8043752 - PB1D10 SINE Alu -47 70 3 5 1448 287 271 104 90 chr12 113213778 113213858 -8043672 - ID SINE ID -141 83 2 5 1448 188 331 184 6 chr12 113213903 113214061 -8043469 - L2 LINE L2 -813 2606 2421 5 1448 423 296 115 77 chr12 113214735 113215126 -8042404 - RMER10A LTR ERVL -19 423 18 5 1448 201 371 11 22 chr12 113215478 113215569 -8041961 + L2a LINE L2 3332 3421 -5 5 1448 633 244 24 59 chr12 113216161 113216331 -8041199 - RSINE1 SINE B4 0 165 2 5 1448 594 290 100 0 chr12 113216347 113216547 -8040983 - B4 SINE B4 -72 220 1 5 1448 182 341 28 56 chr12 113216566 113216709 -8040821 - L2 LINE L2 -936 2483 2345 5 1448 209 283 166 11 chr12 113216680 113216855 -8040675 + MIRb SINE MIR 17 218 -50 5 1448 468 0 0 0 chr12 113217042 113217094 -8040436 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1448 349 333 18 9 chr12 113219794 113219903 -8037627 + ID_B1 SINE B4 73 182 -42 5 1448 641 155 78 0 chr12 113220537 113220653 -8036877 - B1_Mur2 SINE Alu -18 131 7 5 1448 303 340 53 26 chr12 113220903 113221054 -8036476 - L2b LINE L2 -2 3373 3219 5 1448 345 246 55 20 chr12 113221138 113221258 -8036272 - PB1D10 SINE Alu -5 144 15 5 1448 339 354 12 67 chr12 113221868 113221924 -8035606 - B3A SINE B2 0 216 163 5 1448 243 0 0 0 chr12 113221924 113221951 -8035579 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1448 339 347 11 64 chr12 113221951 113222112 -8035418 - B3A SINE B2 -33 165 11 5 1448 568 154 94 0 chr12 113222144 113222261 -8035269 - B1F SINE Alu -1 148 21 5 1448 258 32 0 0 chr12 113222607 113222638 -8034892 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1448 1169 64 0 7 chr12 113222644 113222786 -8034744 - B1_Mus2 SINE Alu -5 142 2 5 1448 860 211 18 55 chr12 113222832 113223052 -8034478 - B3 SINE B2 0 216 5 5 1448 33 56 0 0 chr12 113223542 113223596 -8033934 + AT_rich Low_complexity Low_complexity 1 54 0 5 1448 304 250 41 107 chr12 113223631 113223752 -8033778 + B1_Mm SINE Alu 1 113 -34 5 1448 750 302 45 35 chr12 113223792 113224080 -8033450 + B4A SINE B4 1 291 -1 5 1448 581 209 36 0 chr12 113224304 113224414 -8033116 - B1_Mur1 SINE Alu -6 143 30 5 1448 360 320 0 47 chr12 113224414 113224432 -8033098 - ID_B1 SINE B4 -6 218 97 5 1448 22 0 0 0 chr12 113225692 113225714 -8031816 + AT_rich Low_complexity Low_complexity 1 22 0 5 1448 997 56 12 145 chr12 113226605 113226771 -8030759 + B1_Mm SINE Alu 1 144 -3 5 1448 183 42 0 0 chr12 113226771 113226795 -8030735 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1448 22 0 0 0 chr12 113226840 113226862 -8030668 + AT_rich Low_complexity Low_complexity 1 22 0 5 1448 243 79 0 0 chr12 113227007 113227045 -8030485 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 5 1448 1126 67 0 0 chr12 113227045 113227179 -8030351 - B1_Mus2 SINE Alu -13 134 1 5 1448 381 326 38 9 chr12 113227555 113227694 -8029836 - B3A SINE B2 -11 205 59 5 1448 391 194 48 58 chr12 113228065 113228169 -8029361 - PB1D9 SINE Alu 0 120 18 5 1448 192 232 56 79 chr12 113228735 113228824 -8028706 - L3 LINE CR1 -460 4029 3943 5 1448 772 218 14 0 chr12 113229214 113229356 -8028174 + ID_B1 SINE B4 80 223 -1 5 1448 212 203 14 14 chr12 113229380 113229450 -8028080 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 5 1448 245 255 0 0 chr12 113230535 113230586 -8026944 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1448 216 86 0 0 chr12 113231489 113231524 -8026006 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1448 185 333 63 68 chr12 113231549 113231755 -8025775 - MIR3 SINE MIR -3 205 1 5 1448 471 219 0 0 chr12 113233191 113233273 -8024257 + ID4_ SINE ID 2 83 0 5 1448 2410 119 40 6 chr12 113233696 113234248 -8023282 - RMER19A LTR ERVK 0 737 123 5 1448 292 234 26 13 chr12 113235104 113235182 -8022348 + MTD LTR MaLR 1 79 -342 5 1448 562 163 0 0 chr12 113235179 113235265 -8022265 + B1_Mur3 SINE Alu 30 115 -34 5 1448 1664 208 77 0 chr12 113235290 113235602 -8021928 + MTD LTR MaLR 84 419 0 5 1448 269 265 8 33 chr12 113235731 113235852 -8021678 + Lx6 LINE L1 7300 7417 -43 5 1448 214 247 67 27 chr12 113236638 113236713 -8020817 + ID4_ SINE ID 5 82 -1 5 1448 304 302 37 9 chr12 113237019 113237126 -8020404 - MER20 DNA MER1_type -4 215 106 5 1448 336 111 0 0 chr12 113237824 113237887 -8019643 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1448 920 154 0 32 chr12 113237941 113238095 -8019435 - B1_Mur4 SINE Alu 0 150 2 5 1448 602 281 52 19 chr12 113238565 113238743 -8018787 - ID_B1 SINE B4 -17 275 82 5 1448 335 322 147 7 chr12 113239150 113239300 -8018230 + B4 SINE B4 1 171 -121 5 1448 210 71 0 0 chr12 113239802 113239830 -8017700 + (CAT)n Simple_repeat Simple_repeat 2 29 0 5 1448 772 236 157 14 chr12 113240759 113240982 -8016548 + B4 SINE B4 6 260 -32 5 1448 285 118 59 0 chr12 113241025 113241093 -8016437 + CT-rich Low_complexity Low_complexity 3 74 0 5 1448 214 274 0 19 chr12 113241144 113241196 -8016334 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1448 315 210 0 77 chr12 113241469 113241624 -8015906 + (CAGG)n Simple_repeat Simple_repeat 4 146 0 5 1448 631 303 47 22 chr12 113242187 113242464 -8015066 - L1MC LINE L1 -515 5818 5535 5 1448 307 230 19 103 chr12 113242537 113242602 -8014928 - L1MC LINE L1 -787 5359 5301 5 1448 896 185 14 0 chr12 113242602 113242748 -8014782 - B1_Mur1 SINE Alu -1 148 1 5 1448 307 230 19 103 chr12 113242748 113242837 -8014693 - L1MC LINE L1 -846 5300 5218 5 1448 338 315 35 52 chr12 113242993 113243167 -8014363 - L1MD3 LINE L1 -1167 6828 6658 5 1448 588 125 0 0 chr12 113243168 113243264 -8014266 + (TG)n Simple_repeat Simple_repeat 2 97 0 5 1448 746 318 58 19 chr12 113243272 113243529 -8014001 - B4 SINE B4 -23 269 3 5 1448 675 231 6 30 chr12 113243547 113243712 -8013818 - RSINE1 SINE B4 -2 163 3 5 1448 318 313 42 42 chr12 113243723 113243843 -8013687 - PB1 SINE Alu -7 120 1 5 1448 295 78 39 0 chr12 113243905 113243956 -8013574 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1448 958 243 54 33 chr12 113243972 113244248 -8013282 - B4 SINE B4 -10 282 1 5 1448 24 0 0 0 chr12 113244381 113244405 -8013125 + AT_rich Low_complexity Low_complexity 1 24 0 5 1448 3269 163 70 6 chr12 113244440 113245107 -8012423 - Lx5 LINE L1 -725 6325 5616 5 1449 356 335 72 53 chr12 113246642 113247028 -8010502 - MLT1C LTR MaLR 0 390 9 5 1449 347 312 48 28 chr12 113247228 113247373 -8010157 - B1F2 SINE Alu -1 148 1 5 1449 21 71 0 0 chr12 113247500 113247542 -8009988 + AT_rich Low_complexity Low_complexity 1 42 0 5 1449 1267 245 44 3 chr12 113247629 113247993 -8009537 + Lx8 LINE L1 4377 4755 -1125 5 1449 502 280 180 10 chr12 113248669 113249143 -8008387 + Lx8 LINE L1 4803 5364 -513 5 1449 704 174 69 34 chr12 113249150 113249321 -8008209 - B3 SINE B2 -5 211 2 5 1449 363 205 92 30 chr12 113249323 113249454 -8008076 + Lx8 LINE L1 5338 5476 -404 5 1449 804 246 48 16 chr12 113249527 113249815 -8007715 + Lx8 LINE L1 5628 5927 -1546 5 1449 603 161 2 43 chr12 113249816 113249948 -8007582 - PB1D7 SINE Alu -1 119 1 5 1449 1396 266 173 38 chr12 113250214 113250949 -8006581 + Lx8 LINE L1 6303 7136 -337 5 1449 273 243 33 75 chr12 113251000 113251120 -8006410 + Lx8 LINE L1 7359 7473 0 5 1449 202 97 32 0 chr12 113251537 113251568 -8005962 + (CGG)n Simple_repeat Simple_repeat 3 34 0 5 1449 346 321 36 0 chr12 113251954 113252066 -8005464 - PB1D10 SINE Alu 0 117 2 5 1449 370 207 55 200 chr12 113253153 113253209 -8004321 - MTD LTR MaLR 0 419 364 5 1449 1109 43 41 34 chr12 113253209 113253355 -8004175 + B1_Mus1 SINE Alu 2 148 0 5 1449 370 207 55 200 chr12 113253355 113253443 -8004087 - MTD LTR MaLR -56 363 296 5 1449 564 201 236 53 chr12 113255150 113255413 -8002117 - RLTR6_Mm LTR ERV1 -68 586 276 5 1449 827 155 6 99 chr12 113255426 113255598 -8001932 - RLTR6_Mm LTR ERV1 -498 156 1 5 1449 8337 89 40 34 chr12 113255598 113257882 -7999648 - MMVL30-int LTR ERV1 0 3698 960 5 1449 4601 112 41 13 chr12 113257957 113258705 -7998825 - MMVL30-int LTR ERV1 -2230 1468 700 5 1449 989 196 62 51 chr12 113258747 113259079 -7998451 - MMVL30-int LTR ERV1 -7105 347 24 5 1449 629 219 212 32 chr12 113259083 113259361 -7998169 - RLTR6_Mm LTR ERV1 -51 603 276 5 1449 836 148 6 99 chr12 113259374 113259546 -7997984 - RLTR6_Mm LTR ERV1 -498 156 1 5 1449 937 32 8 0 chr12 113259750 113259874 -7997656 + MERVL-int LTR ERVL 5247 5371 -114 5 1449 381 111 26 53 chr12 113259874 113259950 -7997580 + ORR1A3-int LTR MaLR 567 640 -1323 5 1449 238 252 33 83 chr12 113259959 113259988 -7997542 + ORR1A3-int LTR MaLR 591 613 -1350 5 1449 2459 18 3 3 chr12 113259988 113260282 -7997248 + MT2_Mm LTR ERVL 1 285 -208 5 1449 351 298 15 37 chr12 113260492 113260628 -7996902 - B1F1 SINE Alu -3 146 14 5 1449 487 212 53 9 chr12 113260670 113260784 -7996746 - B1_Mur4 SINE Alu 0 150 32 5 1449 270 0 0 0 chr12 113260788 113260818 -7996712 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1449 297 213 0 0 chr12 113261636 113261744 -7995786 + CT-rich Low_complexity Low_complexity 2 109 0 5 1449 245 254 79 0 chr12 113261762 113261825 -7995705 - B4 SINE B4 -91 201 134 5 1449 21 57 0 0 chr12 113262175 113262210 -7995320 + AT_rich Low_complexity Low_complexity 1 35 0 5 1449 382 248 27 54 chr12 113262493 113262604 -7994926 - PB1D10 SINE Alu -6 111 4 5 1449 267 223 113 28 chr12 113262625 113262731 -7994799 - PB1D10 SINE Alu -1 116 2 6 1449 957 101 65 0 chr12 113265424 113265562 -7991968 + B1_Mur4 SINE Alu 2 148 -2 6 1449 726 264 113 104 chr12 113265991 113266568 -7990962 + MT2A LTR ERVL 1 518 -15 6 1449 225 0 0 0 chr12 113266579 113266604 -7990926 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1449 730 163 43 65 chr12 113266605 113266694 -7990836 - B1_Mm SINE Alu -12 135 42 6 1449 1373 60 32 0 chr12 113266694 113266879 -7990651 - B2_Mm1t SINE B2 -1 192 2 6 1449 730 163 43 65 chr12 113266879 113266927 -7990603 - B1_Mm SINE Alu -106 41 1 6 1449 1832 239 81 24 chr12 113266930 113267508 -7990022 - Lx7 LINE L1 -388 7308 6698 6 1449 1775 293 93 29 chr12 113267599 113268351 -7989179 - Lx7 LINE L1 -1168 6528 5729 6 1449 256 245 0 0 chr12 113268353 113268406 -7989124 - B3 SINE B2 -92 124 72 6 1449 332 265 98 49 chr12 113268587 113268734 -7988796 - B3 SINE B2 0 216 1 6 1449 182 306 27 27 chr12 113268768 113268842 -7988688 + L2 LINE L2 85 158 -3261 6 1449 239 304 0 0 chr12 113268865 113268921 -7988609 - B4A SINE B4 -149 143 88 6 1449 253 250 62 12 chr12 113268988 113269069 -7988461 - PB1D10 SINE Alu -6 111 27 6 1449 695 169 105 0 chr12 113269574 113269698 -7987832 - B1_Mur1 SINE Alu -7 142 6 6 1449 1657 178 39 34 chr12 113270070 113270444 -7987086 - ORR1D1 LTR MaLR -30 344 1 6 1449 263 171 0 0 chr12 113273447 113273488 -7984042 - BC1_Mm scRNA scRNA -71 81 41 6 1449 186 43 0 0 chr12 113275247 113275270 -7982260 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1449 1180 44 0 0 chr12 113275270 113275405 -7982125 - B1_Mm SINE Alu -11 136 2 6 1449 311 149 83 69 chr12 113275419 113275491 -7982039 - PB1D9 SINE Alu -28 121 49 6 1449 546 240 125 27 chr12 113275746 113275930 -7981600 - B4A SINE B4 -89 203 2 6 1449 811 202 56 39 chr12 113276259 113276439 -7981091 - B2_Mm2 SINE B2 -4 191 9 6 1449 344 271 35 12 chr12 113276441 113276527 -7981003 - ID_B1 SINE B4 -13 211 124 6 1449 580 182 8 76 chr12 113276547 113276678 -7980852 - B1_Mus1 SINE Alu -25 123 2 6 1449 519 249 32 47 chr12 113276703 113276893 -7980637 - B3A SINE B2 -11 187 1 6 1449 432 255 78 0 chr12 113276895 113276997 -7980533 - ID_B1 SINE B4 -92 132 23 6 1449 521 200 38 9 chr12 113277837 113277943 -7979587 + B1_Mur1 SINE Alu 41 149 0 6 1449 24 32 0 0 chr12 113278026 113278057 -7979473 + AT_rich Low_complexity Low_complexity 1 31 0 6 1449 311 246 0 14 chr12 113278072 113278146 -7979384 + ID4 SINE ID 8 80 -3 6 1449 1079 155 20 86 chr12 113278897 113279095 -7978435 + B3 SINE B2 2 186 -9 6 1449 667 237 7 41 chr12 113279116 113279261 -7978269 + B1_Mus1 SINE Alu 9 148 0 6 1449 1869 159 82 22 chr12 113279310 113279676 -7977854 + RMER1C Other Other 941 1328 -14 6 1449 1230 194 160 44 chr12 113280156 113280500 -7977030 - ORR1C2 LTR MaLR 0 384 1 6 1449 484 189 104 22 chr12 113280617 113280752 -7976778 + B1F1 SINE Alu 1 146 -3 6 1449 22 0 0 0 chr12 113280761 113280783 -7976747 + AT_rich Low_complexity Low_complexity 1 22 0 6 1449 767 202 55 0 chr12 113281322 113281485 -7976045 - URR1A DNA MER1_type -54 172 1 6 1449 871 274 187 2 chr12 113281826 113282228 -7975302 - Lx9 LINE L1 -171 7473 6998 6 1449 273 70 53 0 chr12 113284590 113284647 -7972883 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1449 584 254 27 40 chr12 113284654 113284802 -7972728 - B3 SINE B2 -69 147 2 6 1449 216 0 0 0 chr12 113285584 113285608 -7971922 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6 1449 1199 61 0 0 chr12 113285608 113285755 -7971775 - B1_Mus2 SINE Alu 0 147 1 6 1449 442 226 159 31 chr12 113286267 113286526 -7971004 + MTEb LTR MaLR 65 379 0 6 1449 1613 128 65 40 chr12 113286674 113286749 -7970781 - ORR1B1 LTR MaLR -105 289 225 6 1449 1587 32 27 0 chr12 113286749 113286935 -7970595 - B2_Mm1t SINE B2 -2 191 1 6 1449 1613 128 65 40 chr12 113286935 113287136 -7970394 - ORR1B1 LTR MaLR -170 224 6 6 1449 1738 155 87 0 chr12 113287478 113287787 -7969743 - MTC LTR MaLR -81 340 5 6 1449 464 283 49 42 chr12 113288155 113288299 -7969231 + B1F1 SINE Alu 4 148 -1 6 1449 1077 121 43 21 chr12 113288362 113288548 -7968982 + B2_Mm2 SINE B2 1 190 -5 6 1449 21 82 0 0 chr12 113288660 113288709 -7968821 + AT_rich Low_complexity Low_complexity 1 49 0 6 1449 850 239 50 5 chr12 113288712 113288914 -7968616 - B3 SINE B2 -4 212 2 6 1449 467 250 180 0 chr12 113288942 113289070 -7968460 - RSINE1 SINE B4 -14 151 1 6 1449 682 174 229 17 chr12 113289249 113289424 -7968106 + B3 SINE B2 2 213 -3 6 1449 2699 130 45 16 chr12 113289457 113289903 -7967627 - RMER6B LTR ERVK 0 461 3 6 1449 192 77 0 0 chr12 113290491 113290517 -7967013 + (CCCGG)n Simple_repeat Simple_repeat 3 28 0 6 1449 314 321 246 14 chr12 113290972 113291253 -7966277 + L1MD LINE L1 4998 5343 -803 6 1449 1187 101 153 0 chr12 113291436 113291625 -7965905 - ORR1B2 LTR MaLR -149 218 1 6 1449 1204 131 60 15 chr12 113291625 113291826 -7965704 - MTC LTR MaLR -210 211 2 6 1449 3868 179 170 34 chr12 113291824 113292759 -7964771 - MTC-int LTR MaLR 0 1258 197 6 1449 247 161 0 125 chr12 113292773 113292837 -7964693 - B1_Mus2 SINE Alu 0 147 92 6 1449 270 111 0 62 chr12 113292860 113292908 -7964622 - MTC-int LTR MaLR -1069 189 145 6 1449 39735 51 12 4 chr12 113292910 113299354 -7958176 - L1Md_T LINE L1 0 6582 129 6 1449 498 174 0 11 chr12 113299354 113299447 -7958083 - MTC-int LTR MaLR -1068 190 99 6 1449 1028 173 170 90 chr12 113299424 113299735 -7957795 + ORR1A3-int LTR MaLR 1207 1542 -421 6 1449 393 69 111 0 chr12 113299731 113299803 -7957727 - MTC-int LTR MaLR -1177 81 2 6 1449 2473 133 56 8 chr12 113299807 113300201 -7957329 - MTC LTR MaLR -8 413 1 6 1449 855 208 148 106 chr12 113300265 113300642 -7956888 - RLTR9C LTR ERVK 0 393 1 6 1449 214 175 36 79 chr12 113302366 113302425 -7955105 - B1F2 SINE Alu -95 55 1 6 1449 1102 98 104 0 chr12 113302605 113302778 -7954752 - B2_Mm2 SINE B2 -3 192 2 6 1449 32 67 0 0 chr12 113302917 113302977 -7954553 + AT_rich Low_complexity Low_complexity 1 60 0 6 1449 5189 227 86 91 chr12 113303344 113304895 -7952635 - Lx6 LINE L1 -177 7283 5741 6 1449 271 288 33 137 chr12 113305086 113305452 -7952078 - L1M4b LINE L1 -5660 1674 1347 6 1449 408 243 79 26 chr12 113305656 113305770 -7951760 + B1F SINE Alu 30 149 0 6 1449 381 287 43 0 chr12 113306045 113306139 -7951391 + RSINE1 SINE B4 68 165 0 6 1449 1602 166 99 3 chr12 113307092 113307406 -7950124 - ORR1C2 LTR MaLR 0 384 41 6 1449 420 242 22 0 chr12 113308294 113308385 -7949145 - RSINE1 SINE B4 -72 93 1 6 1449 647 280 118 46 chr12 113309695 113309900 -7947630 + L1MA4 LINE L1 2152 2377 -4472 6 1449 3362 28 10 2 chr12 113309900 113310293 -7947237 - MTA_Mm LTR MaLR 0 396 1 6 1449 647 280 118 46 chr12 113310293 113310502 -7947028 + L1MA4 LINE L1 2378 2596 -4253 6 1449 2484 58 58 47 chr12 113310537 113310879 -7946651 - ORR1A1 LTR MaLR 0 346 1 6 1449 13357 72 19 4 chr12 113310879 113312645 -7944885 - ORR1A1-int LTR MaLR 0 1792 1 6 1449 3561 54 75 0 chr12 113312645 113313087 -7944443 - MT2C_Mm LTR ERVL 0 475 1 6 1449 474 243 24 108 chr12 113313306 113313472 -7944058 + RSINE1 SINE B4 14 165 0 6 1449 524 254 98 38 chr12 113314035 113314219 -7943311 + B3A SINE B2 1 195 -3 6 1449 336 251 220 5 chr12 113314227 113314427 -7943103 + L1MA4 LINE L1 3485 3727 -3118 6 1449 608 244 84 0 chr12 113314443 113314574 -7942956 + RSINE1 SINE B4 2 143 -22 6 1449 333 0 0 0 chr12 113314589 113314626 -7942904 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1449 567 0 0 0 chr12 113314626 113314689 -7942841 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1449 681 255 21 7 chr12 113314692 113314823 -7942707 + B3 SINE B2 16 148 -68 6 1449 231 274 137 0 chr12 113314823 113314913 -7942617 + PB1D9 SINE Alu 3 106 -14 6 1449 407 221 114 9 chr12 113314913 113315018 -7942512 + PB1D7 SINE Alu 4 119 -1 6 1449 231 274 137 0 chr12 113315018 113315029 -7942501 + PB1D9 SINE Alu 107 117 -3 6 1449 709 299 136 31 chr12 113315144 113315628 -7941902 + L1MA4 LINE L1 6211 6745 -257 6 1449 254 330 33 33 chr12 113316756 113316878 -7940652 - L2b LINE L2 -3 3372 3251 6 1449 764 226 11 56 chr12 113317604 113317687 -7939843 - MTE2b LTR MaLR 0 379 304 6 1449 6611 97 25 11 chr12 113317687 113318631 -7938899 + RMER17B LTR ERVK 1 958 0 6 1449 764 257 16 108 chr12 113318631 113318877 -7938653 - MTE2b LTR MaLR -77 342 128 6 1449 859 164 25 0 chr12 113319004 113319163 -7938367 - RMER1B Other Other 0 1066 904 6 1449 841 283 169 15 chr12 113319172 113319445 -7938085 - RMER1A Other Other -575 455 141 6 1449 314 264 52 52 chr12 113319446 113319582 -7937948 - L1MC LINE L1 -1860 4286 4151 6 1449 870 10 0 0 chr12 113320109 113320208 -7937322 + (TTC)n Simple_repeat Simple_repeat 1 99 0 6 1449 1203 43 0 0 chr12 113320210 113320350 -7937180 - B1_Mm SINE Alu -6 141 2 6 1449 2609 130 71 5 chr12 113320636 113321061 -7936469 + RMER20A LTR ERVK 17 469 -47 6 1449 232 293 40 0 chr12 113321020 113321095 -7936435 - LTR81B LTR ERV1? -912 481 404 6 1449 253 225 13 53 chr12 113321075 113321150 -7936380 + RLTR25B LTR ERVK 427 498 -530 6 1449 661 180 9 0 chr12 113321087 113321198 -7936332 + B1_Mus1 SINE Alu 36 147 -1 6 1449 225 167 0 0 chr12 113321198 113321240 -7936290 + GA-rich Low_complexity Low_complexity 1 42 0 6 1449 672 269 14 78 chr12 113321369 113321587 -7935943 + B3A SINE B2 8 211 -5 6 1449 389 303 23 16 chr12 113321697 113321829 -7935701 + B3A SINE B2 72 211 -5 6 1449 832 153 497 19 chr12 113321874 113322186 -7935344 + RMER6B LTR ERVK 1 461 0 6 1449 286 284 14 0 chr12 113322211 113322285 -7935245 - B4 SINE B4 -204 88 14 6 1449 302 240 21 10 chr12 113322288 113322385 -7935145 - L1M4 LINE L1 -1087 5059 4962 6 1449 918 83 0 0 chr12 113322664 113322785 -7934745 - B2_Mm2 SINE B2 -34 161 41 6 1449 277 275 29 0 chr12 113322784 113322853 -7934677 - B3A SINE B2 -46 152 82 6 1449 2249 37 6 4 chr12 113323059 113323332 -7934198 - RLTR10-int LTR ERVK -1684 303 1 6 1449 3173 47 10 0 chr12 113323334 113323718 -7933812 - RLTR10 LTR ERVK -2 388 1 6 1449 352 260 39 29 chr12 113325973 113326076 -7931454 - MER68 LTR ERVL -415 148 45 6 1449 323 216 33 22 chr12 113326343 113326433 -7931097 + B1F1 SINE Alu 1 91 -58 7 1449 594 247 149 0 chr12 113326489 113326683 -7930847 + ID_B1 SINE B4 2 224 0 7 1449 613 156 105 16 chr12 113326560 113326684 -7930846 + B1_Mus2 SINE Alu 12 146 -1 7 1449 227 133 22 0 chr12 113326686 113326731 -7930799 + GA-rich Low_complexity Low_complexity 3 48 0 7 1449 646 230 65 29 chr12 113326735 113326905 -7930625 + ID_B1 SINE B4 49 224 0 7 1449 321 317 117 10 chr12 113326913 113327222 -7930308 + L1MA7 LINE L1 3065 3406 -2737 7 1449 308 357 162 0 chr12 113327308 113327543 -7929987 + L1MA7 LINE L1 5110 5382 -761 7 1449 316 188 31 169 chr12 113327549 113327607 -7929923 - Lx9 LINE L1 -263 7381 7321 7 1449 963 97 0 0 chr12 113327607 113327752 -7929778 + (TCC)n Simple_repeat Simple_repeat 3 147 0 7 1449 316 188 31 169 chr12 113327752 113327767 -7929763 - Lx9 LINE L1 -324 7320 7313 7 1449 840 142 13 45 chr12 113327767 113327922 -7929608 - B1_Mur4 SINE Alu 0 150 1 7 1449 316 188 31 169 chr12 113327922 113328007 -7929523 - Lx9 LINE L1 -332 7312 7244 7 1449 696 190 136 11 chr12 113327998 113328174 -7929356 + Lx9 LINE L1 7361 7558 -86 7 1449 1124 97 0 0 chr12 113328252 113328397 -7929133 - B1_Mus1 SINE Alu -2 146 2 7 1449 493 207 18 35 chr12 113328398 113328532 -7928998 + PB1D9 SINE Alu 12 149 0 7 1449 454 327 67 37 chr12 113328584 113328956 -7928574 + L1MA7 LINE L1 5645 6020 -277 7 1449 638 263 82 43 chr12 113329609 113329816 -7927714 - B3 SINE B2 0 216 2 7 1449 303 109 71 18 chr12 113329881 113329937 -7927593 - MTE2b LTR MaLR 0 379 321 7 1449 7126 87 5 12 chr12 113329937 113331978 -7925552 + L1VL4 LINE L1 556 2184 -1730 7 1449 1426 118 29 8 chr12 113331978 113332218 -7925312 + Lx LINE L1 6410 6654 0 7 1449 1152 239 43 79 chr12 113332238 113332599 -7924931 - MTE2a LTR MaLR -44 375 10 7 1449 1088 220 35 13 chr12 113332698 113332924 -7924606 - MTEa LTR MaLR -131 248 18 7 1449 5423 148 124 27 chr12 113332991 113333361 -7924169 - RMER12 LTR ERVK -56 1266 812 7 1449 270 0 0 0 chr12 113333361 113333391 -7924139 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1449 5423 148 124 27 chr12 113333391 113334174 -7923356 - RMER12 LTR ERVK -511 811 1 7 1449 303 93 0 0 chr12 113334211 113334254 -7923276 + (TCC)n Simple_repeat Simple_repeat 1 43 0 7 1449 245 143 0 0 chr12 113334254 113334289 -7923241 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 7 1449 277 335 125 44 chr12 113334561 113334851 -7922679 - L1M5 LINE L1 -293 5886 5565 7 1449 522 235 60 15 chr12 113335192 113335326 -7922204 - B1F2 SINE Alu 0 149 10 7 1449 502 231 37 0 chr12 113335406 113335514 -7922016 - PB1D7 SINE Alu -2 118 7 7 1449 343 294 10 19 chr12 113335423 113335527 -7922003 - ID_B1 SINE B4 -45 179 77 7 1449 339 347 6 17 chr12 113335685 113335861 -7921669 + (TATG)n Simple_repeat Simple_repeat 1 174 0 7 1449 237 270 0 0 chr12 113335881 113335981 -7921549 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 1449 311 369 18 0 chr12 113335984 113336152 -7921378 + (TATG)n Simple_repeat Simple_repeat 3 173 0 7 1449 231 365 59 72 chr12 113336152 113336270 -7921260 + RLTR22_Mus LTR ERVK 1261 1452 -356 7 1449 336 333 0 21 chr12 113336270 113336365 -7921165 - B4 SINE B4 0 292 200 7 1449 231 365 59 72 chr12 113336365 113336388 -7921142 + RLTR22_Mus LTR ERVK 1453 1493 -315 7 1449 662 247 210 16 chr12 113336480 113336723 -7920807 - B4A SINE B4 -2 290 1 7 1449 382 214 68 0 chr12 113336724 113336841 -7920689 - L1MB2 LINE L1 -113 6058 5934 7 1449 795 246 214 26 chr12 113336845 113337154 -7920376 - MLT1A1 LTR MaLR -4 404 38 7 1449 259 165 96 1 chr12 113337179 113337259 -7920271 - L1MB2 LINE L1 -263 5905 5819 7 1449 224 270 15 45 chr12 113337623 113337689 -7919841 - RSINE1 SINE B4 -43 122 59 7 1449 799 234 23 3 chr12 113338033 113338242 -7919288 - B3A SINE B2 -6 210 1 7 1449 253 209 56 69 chr12 113338322 113338394 -7919136 - B1F SINE Alu 0 149 79 7 1449 504 0 0 0 chr12 113338913 113338969 -7918561 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1449 347 309 98 6 chr12 113340546 113340709 -7916821 - MER5A DNA MER1_type -3 186 9 7 1449 277 288 41 0 chr12 113340782 113340855 -7916675 + MLT1A1 LTR MaLR 52 127 -281 7 1449 312 232 72 21 chr12 113341137 113341234 -7916296 + MTE2a LTR MaLR 278 379 0 7 1449 786 179 28 14 chr12 113341683 113341825 -7915705 - B1_Mus2 SINE Alu -1 146 3 7 1449 1281 34 0 0 chr12 113341836 113341983 -7915547 - B1_Mm SINE Alu 0 147 1 7 1449 224 336 132 53 chr12 113342100 113342351 -7915179 - ID_B1 SINE B4 -18 274 2 7 1449 374 190 0 160 chr12 113342351 113342400 -7915130 - B1_Mur4 SINE Alu -25 125 86 7 1449 1831 199 190 19 chr12 113342400 113342989 -7914541 - RMER6C LTR ERVK 0 690 1 7 1449 374 190 0 160 chr12 113342989 113343055 -7914475 - B1_Mur4 SINE Alu -65 85 29 7 1449 418 216 146 10 chr12 113343066 113343169 -7914361 - PB1D10 SINE Alu 0 117 1 7 1449 1503 159 219 9 chr12 113343514 113343857 -7913673 - MTD LTR MaLR 0 419 5 7 1449 189 0 0 0 chr12 113344362 113344383 -7913147 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7 1449 461 257 70 105 chr12 113346516 113346537 -7910993 - B4 SINE B4 -51 241 180 7 1449 979 65 36 0 chr12 113346537 113346675 -7910855 - B1_Mus1 SINE Alu 0 148 6 7 1449 461 257 70 105 chr12 113346675 113346716 -7910814 - B4 SINE B4 -51 179 49 7 1449 311 333 208 20 chr12 113347565 113347859 -7909671 - Arthur1 DNA Tip100 -30 3917 3569 7 1449 298 345 118 26 chr12 113348198 113348469 -7909061 - MLT1D LTR MaLR -194 311 16 7 1449 224 325 36 12 chr12 113349708 113349792 -7907738 - MIRc SINE MIR -140 128 43 7 1449 220 355 0 28 chr12 113351306 113351451 -7906079 + G-rich Low_complexity Low_complexity 2 142 0 7 1449 201 74 0 0 chr12 113355915 113355942 -7901588 + (CAGCC)n Simple_repeat Simple_repeat 2 28 0 7 1449 231 114 0 0 chr12 113364239 113364274 -7893256 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1449 531 0 0 0 chr12 113368079 113368138 -7889392 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1449 21 0 0 0 chr12 113370389 113370410 -7887120 + AT_rich Low_complexity Low_complexity 1 21 0 7 1449 295 291 48 0 chr12 113371537 113371640 -7885890 + MER81 DNA AcHobo 2 109 -5 7 1449 199 313 60 0 chr12 113371777 113371860 -7885670 - MER5A DNA MER1_type -4 185 98 7 1449 325 252 143 19 chr12 113372212 113372317 -7885213 + B1F2 SINE Alu 12 129 -20 7 1449 830 175 58 167 chr12 113372454 113372694 -7884836 - B3 SINE B2 0 216 3 7 1449 26 30 0 0 chr12 113372819 113372852 -7884678 + AT_rich Low_complexity Low_complexity 1 33 0 7 1449 464 238 130 20 chr12 113372868 113373014 -7884516 - RSINE1 SINE B4 0 165 4 7 1449 317 218 146 19 chr12 113373024 113373127 -7884403 - PB1D10 SINE Alu -1 116 1 7 1449 915 312 24 4 chr12 113374577 113374805 -7882725 + B4A SINE B4 1 233 -59 7 1449 589 323 58 16 chr12 113374805 113374994 -7882536 + B3A SINE B2 1 197 -1 7 1449 408 298 93 83 chr12 113375025 113375314 -7882216 + B4 SINE B4 1 292 0 7 1449 614 167 0 82 chr12 113375333 113375529 -7882001 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1449 221 270 0 11 chr12 113375575 113375665 -7881865 + (CA)n Simple_repeat Simple_repeat 1 89 0 7 1449 301 319 194 63 chr12 113376059 113376570 -7880960 - HAL1 LINE L1 -540 1967 1390 7 1449 1198 116 10 17 chr12 113376640 113377237 -7880293 + (TATG)n Simple_repeat Simple_repeat 1 592 0 7 1450 897 233 37 5 chr12 113377291 113377481 -7880049 - B3A SINE B2 0 198 3 7 1450 264 273 117 0 chr12 113377561 113377638 -7879892 - B3 SINE B2 -6 210 125 7 1450 1419 68 15 30 chr12 113378057 113378255 -7879275 - B2_Mm2 SINE B2 0 195 1 7 1450 203 359 10 42 chr12 113378543 113378639 -7878891 + MIRm SINE MIR 115 207 -69 7 1450 205 309 195 21 chr12 113379027 113379361 -7878169 - L2a LINE L2 -82 3344 2953 7 1450 228 293 61 0 chr12 113380061 113380143 -7877387 + MIR SINE MIR 110 196 -66 7 1450 715 219 0 40 chr12 113380421 113380573 -7876957 + B1_Mur1 SINE Alu 3 148 -1 7 1450 180 0 0 0 chr12 113381893 113381913 -7875617 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 7 1450 25 65 0 0 chr12 113382283 113382329 -7875201 + GC_rich Low_complexity Low_complexity 1 46 0 7 1450 22 56 0 0 chr12 113382411 113382447 -7875083 + GC_rich Low_complexity Low_complexity 1 36 0 7 1450 189 329 195 0 chr12 113384090 113384172 -7873358 + MIRb SINE MIR 77 174 -94 7 1450 369 0 0 0 chr12 113386706 113386747 -7870783 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1450 444 67 0 0 chr12 113388976 113389036 -7868494 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1450 333 0 0 0 chr12 113390230 113390267 -7867263 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1450 199 286 46 35 chr12 113390430 113390517 -7867013 + MIR SINE MIR 35 122 -86 7 1450 651 108 23 0 chr12 113392962 113393091 -7864439 + (TG)n Simple_repeat Simple_repeat 2 133 0 7 1450 198 0 0 0 chr12 113393369 113393391 -7864139 + (TGG)n Simple_repeat Simple_repeat 2 23 0 7 1450 204 184 26 0 chr12 113397478 113397516 -7860014 - L2c LINE L2 -239 3148 3110 7 1450 702 221 177 0 chr12 113398584 113398765 -7858765 + URR1B DNA MER1_type 13 225 0 7 1450 222 118 0 0 chr12 113399776 113399810 -7857720 + (TCGTG)n Simple_repeat Simple_repeat 1 34 0 7 1450 197 128 21 0 chr12 113404324 113404371 -7853159 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 7 1450 200 250 47 0 chr12 113404519 113404605 -7852925 - L2c LINE L2 -160 3215 3122 7 1450 291 20 58 19 chr12 113405386 113405438 -7852092 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 7 1450 409 219 13 141 chr12 113408405 113408554 -7848976 + MT2B LTR ERVL 135 264 -337 7 1450 987 47 0 0 chr12 113408452 113408581 -7848949 + B1_Mus1 SINE Alu 12 140 -8 7 1450 225 0 0 0 chr12 113408581 113408606 -7848924 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1450 210 105 0 0 chr12 113419501 113419539 -7837991 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1450 209 30 61 0 chr12 113422326 113422359 -7835171 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 7 1450 369 0 0 0 chr12 113422362 113422403 -7835127 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1450 522 0 0 0 chr12 113422403 113422460 -7835070 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1450 215 297 98 11 chr12 113423246 113423338 -7834192 + ID_B1 SINE B4 65 164 -60 8 1450 211 292 111 11 chr12 113423269 113423359 -7834171 + PB1D9 SINE Alu 14 112 -8 8 1450 778 226 44 0 chr12 113423377 113423558 -7833972 + B3 SINE B2 1 189 -27 8 1450 241 184 20 0 chr12 113423591 113423640 -7833890 + BC1_Mm scRNA scRNA 44 93 -59 8 1450 820 182 140 31 chr12 113423720 113423913 -7833617 - B3 SINE B2 0 216 3 8 1450 486 265 64 0 chr12 113423935 113424070 -7833460 - ID_B1 SINE B4 0 224 83 8 1450 321 217 263 32 chr12 113424080 113424175 -7833355 - PB1D10 SINE Alu 0 117 1 8 1450 940 166 136 63 chr12 113426316 113426522 -7831008 - URR1B DNA MER1_type 0 225 5 8 1450 666 148 139 66 chr12 113428805 113428942 -7828588 - B1_Mus1 SINE Alu 0 148 2 8 1450 1085 264 76 31 chr12 113428945 113429328 -7828202 + MTD LTR MaLR 6 405 -14 8 1450 819 0 0 0 chr12 113430334 113430425 -7827105 + (TTC)n Simple_repeat Simple_repeat 2 92 0 8 1450 1024 42 0 1 chr12 113430427 113430562 -7826968 - B1_Mm SINE Alu -5 142 13 8 1450 452 246 55 82 chr12 113430433 113430579 -7826951 - B4 SINE B4 -72 220 79 8 1450 428 229 38 89 chr12 113430454 113430612 -7826918 - MT2B LTR ERVL -325 276 127 8 1450 241 331 53 96 chr12 113431323 113431344 -7826186 - B2_Mm2 SINE B2 -15 180 2 8 1450 632 284 6 24 chr12 113431344 113431510 -7826020 - RSINE1 SINE B4 0 165 3 8 1450 520 264 11 4 chr12 113432212 113432493 -7825037 + (TCCA)n Simple_repeat Simple_repeat 1 283 0 8 1450 248 211 86 17 chr12 113433629 113433687 -7823843 - tRNA-Ala-GCY_ tRNA tRNA -9 66 5 8 1450 244 241 24 48 chr12 113434327 113434410 -7823120 - PB1D10 SINE Alu -33 84 4 8 1450 1318 160 4 22 chr12 113435465 113435705 -7821825 + MTC LTR MaLR 6 225 -196 8 1450 763 186 130 5 chr12 113436040 113436224 -7821306 - MTD LTR MaLR -3 416 210 8 1450 478 360 42 5 chr12 113436241 113436453 -7821077 - MLT1B LTR MaLR -170 220 1 8 1450 709 175 288 18 chr12 113436720 113436883 -7820647 - B3 SINE B2 -9 207 1 8 1450 2349 177 15 0 chr12 113436973 113437380 -7820150 + MTC LTR MaLR 1 413 -8 8 1450 1200 75 0 0 chr12 113439008 113439155 -7818375 - B1_Mus1 SINE Alu 0 148 2 8 1450 1332 249 72 42 chr12 113440413 113440803 -7816727 - MTD LTR MaLR -14 405 15 8 1450 333 0 0 0 chr12 113441088 113441125 -7816405 + (TTA)n Simple_repeat Simple_repeat 2 38 0 8 1450 621 236 62 19 chr12 113441126 113441286 -7816244 - B3 SINE B2 -42 174 8 8 1450 315 331 46 23 chr12 113441363 113441536 -7815994 - L1MEe LINE L1 -4036 818 642 8 1450 1663 37 0 0 chr12 113442483 113442672 -7814858 - B2_Mm1a SINE B2 -3 190 2 8 1450 2427 102 67 0 chr12 113444381 113444725 -7812805 - ORR1B2 LTR MaLR 0 367 1 8 1450 220 96 137 0 chr12 113444865 113445011 -7812519 + (CAGG)n Simple_repeat Simple_repeat 3 168 0 8 1450 310 139 123 7 chr12 113445019 113445157 -7812373 + (TAGG)n Simple_repeat Simple_repeat 3 156 0 8 1450 461 280 232 62 chr12 113447263 113447582 -7809948 + MTEb LTR MaLR 7 379 0 8 1450 21 0 0 0 chr12 113449016 113449037 -7808493 + GC_rich Low_complexity Low_complexity 1 21 0 8 1450 3285 53 18 2 chr12 113449291 113449690 -7807840 + MTB_Mm LTR MaLR 3 407 0 8 1450 238 309 47 39 chr12 113450708 113450836 -7806694 + MLT1B LTR MaLR 66 194 -196 8 1450 213 208 13 25 chr12 113450963 113451042 -7806488 + CT-rich Low_complexity Low_complexity 6 83 0 8 1450 289 145 0 31 chr12 113451198 113451262 -7806268 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1450 425 168 0 58 chr12 113451315 113451454 -7806076 + (TG)n Simple_repeat Simple_repeat 2 132 0 8 1450 220 318 0 0 chr12 113453081 113453144 -7804386 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1450 183 184 0 0 chr12 113453176 113453214 -7804316 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 8 1450 288 0 0 0 chr12 113453398 113453430 -7804100 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1450 344 22 22 0 chr12 113453430 113453474 -7804056 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1450 459 0 0 0 chr12 113453539 113453590 -7803940 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 8 1450 210 314 12 31 chr12 113453743 113453904 -7803626 + (CACCC)n Simple_repeat Simple_repeat 4 161 0 8 1450 214 213 41 31 chr12 113453781 113453878 -7803652 + (CACAC)n Simple_repeat Simple_repeat 4 101 0 8 1450 284 208 56 0 chr12 113455820 113455892 -7801638 - B1F SINE Alu -34 115 40 8 1450 196 263 17 17 chr12 113457423 113457481 -7800049 + MIR3 SINE MIR 101 158 -50 8 1450 406 298 90 21 chr12 113457576 113457720 -7799810 - RSINE1 SINE B4 -6 159 6 8 1450 4827 67 86 0 chr12 113457759 113458458 -7799072 - L1VL4 LINE L1 -5351 951 193 8 1450 1080 137 16 21 chr12 113458463 113458650 -7798880 - MT2B2 LTR ERVL -72 512 327 8 1450 282 326 11 0 chr12 113458655 113458744 -7798786 - PB1D10 SINE Alu -9 108 19 8 1450 708 216 4 0 chr12 113464351 113464815 -7792715 + (TG)n Simple_repeat Simple_repeat 1 466 0 8 1450 1690 222 39 41 chr12 113465487 113465901 -7791629 - MTD LTR MaLR -6 413 1 8 1450 186 296 37 0 chr12 113466107 113466161 -7791369 - MIRb SINE MIR -90 178 123 8 1450 447 205 0 53 chr12 113467026 113467196 -7790334 + C-rich Low_complexity Low_complexity 4 164 0 8 1450 322 248 0 29 chr12 113467882 113467986 -7789544 + (TG)n Simple_repeat Simple_repeat 2 102 0 8 1450 225 185 0 0 chr12 113467989 113468054 -7789476 + (TCTCTG)n Simple_repeat Simple_repeat 4 68 0 8 1450 189 337 48 12 chr12 113468285 113468369 -7789161 + MIRc SINE MIR 62 148 -120 8 1450 1132 214 22 54 chr12 113468375 113468652 -7788878 + RMER1B Other Other 471 738 -328 8 1450 676 358 87 38 chr12 113469467 113469972 -7787558 - MT2A LTR ERVL -3 530 1 8 1450 335 306 35 49 chr12 113470264 113470501 -7787029 - L1M5 LINE L1 -359 5814 5581 8 1450 2560 45 52 0 chr12 113470530 113470840 -7786690 - ORR1A2 LTR MaLR 0 327 2 8 1450 23 54 0 0 chr12 113471098 113471135 -7786395 + AT_rich Low_complexity Low_complexity 1 37 0 8 1450 249 325 35 77 chr12 113471445 113471615 -7785915 + RLTR14 LTR ERV1 154 316 -66 8 1450 188 67 0 32 chr12 113472322 113472353 -7785177 + (TTA)n Simple_repeat Simple_repeat 2 31 0 8 1450 693 291 25 5 chr12 113472353 113472557 -7784973 - B3 SINE B2 -8 208 1 8 1450 1149 51 0 0 chr12 113473067 113473205 -7784325 + B1_Mm SINE Alu 1 138 -9 8 1450 375 299 32 151 chr12 113473282 113473460 -7784070 - L1M5 LINE L1 -1476 4670 4515 8 1450 952 216 14 42 chr12 113473460 113473677 -7783853 - ID_B1 SINE B4 -13 211 1 8 1450 375 299 32 151 chr12 113473677 113473782 -7783748 - L1M5 LINE L1 -1632 4514 4421 8 1450 811 114 35 18 chr12 113473850 113474019 -7783511 + CT-rich Low_complexity Low_complexity 4 175 0 8 1450 279 304 105 8 chr12 113474160 113474300 -7783230 - MTE2b LTR MaLR -24 355 203 8 1450 477 0 0 0 chr12 113475969 113476022 -7781508 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1450 422 279 237 15 chr12 113477927 113478189 -7779341 - MLT1B LTR MaLR -64 326 7 8 1450 229 296 42 0 chr12 113480595 113480666 -7776864 + ID4 SINE ID 4 77 -6 8 1450 238 26 51 0 chr12 113481120 113481159 -7776371 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 8 1450 989 60 0 0 chr12 113481165 113481299 -7776231 - B1_Mus2 SINE Alu -11 136 3 8 1450 447 202 8 95 chr12 113481189 113481315 -7776215 - MT2B LTR ERVL -337 264 150 8 1450 249 83 0 0 chr12 113481784 113481820 -7775710 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1450 206 235 0 19 chr12 113481860 113481912 -7775618 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1450 261 187 0 0 chr12 113482054 113482129 -7775401 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1450 308 311 19 0 chr12 113483300 113483406 -7774124 - L1M4 LINE L1 -710 5468 5361 8 1450 241 270 90 0 chr12 113483502 113483613 -7773917 + L1MEc LINE L1 2062 2182 -4218 8 1450 943 41 0 0 chr12 113483645 113483766 -7773764 + B1_Mm SINE Alu 27 147 0 8 1450 1578 206 88 40 chr12 113483827 113484226 -7773304 + MTD LTR MaLR 2 419 0 8 1450 243 293 0 13 chr12 113484429 113484505 -7773025 + MusHAL1 LINE L1 1961 2035 -677 8 1450 268 347 177 24 chr12 113485018 113485176 -7772354 - ORR1E LTR MaLR -1 358 189 8 1450 351 0 0 0 chr12 113485176 113485215 -7772315 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1450 468 0 0 0 chr12 113485215 113485266 -7772264 + (GA)n Simple_repeat Simple_repeat 2 53 0 8 1450 268 347 177 24 chr12 113485266 113485360 -7772170 - ORR1E LTR MaLR -171 188 67 8 1450 650 270 103 48 chr12 113485853 113486204 -7771326 - MTD LTR MaLR 0 379 5 8 1450 1231 41 0 13 chr12 113486960 113487109 -7770421 - B1_Mus1 SINE Alu -1 147 1 8 1450 198 228 118 11 chr12 113490088 113490181 -7767349 - MIR3 SINE MIR -47 161 59 8 1450 450 0 0 0 chr12 113490811 113490861 -7766669 + (CAGCC)n Simple_repeat Simple_repeat 4 53 0 8 1450 675 238 33 7 chr12 113492340 113492492 -7765038 + RSINE1 SINE B4 3 158 -7 8 1450 275 278 41 10 chr12 113492902 113493000 -7764530 - L1MC3 LINE L1 -651 7134 7034 8 1450 4384 124 130 73 chr12 113493147 113494000 -7763530 + RMER19B LTR ERVK 1 902 0 8 1450 280 349 30 15 chr12 113494052 113494183 -7763347 - L1MC3 LINE L1 -1262 6523 6391 8 1450 1704 292 31 18 chr12 113494870 113495453 -7762077 - L1MC3 LINE L1 -2037 5958 5356 8 1450 300 53 0 0 chr12 113495453 113495491 -7762039 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 8 1450 1415 313 111 46 chr12 113495491 113496485 -7761045 - L1MC3 LINE L1 -2640 5355 4261 8 1450 332 253 245 11 chr12 113496503 113496833 -7760697 - L1MC3 LINE L1 -2262 3878 3482 8 1450 299 247 27 0 chr12 113496845 113496918 -7760612 - MTEb LTR MaLR -27 352 278 8 1450 799 103 22 34 chr12 113496937 113497266 -7760264 + (TG)n Simple_repeat Simple_repeat 1 324 0 8 1450 278 82 41 0 chr12 113497362 113497411 -7760119 + (TTCCC)n Simple_repeat Simple_repeat 5 55 0 8 1450 1023 14 13 33 chr12 113497466 113497619 -7759911 + (TTCTC)n Simple_repeat Simple_repeat 4 153 0 8 1450 711 0 0 0 chr12 113497621 113497700 -7759830 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 9 1450 1121 57 14 0 chr12 113497704 113497844 -7759686 - B1_Mm SINE Alu -5 142 1 9 1450 871 291 179 32 chr12 113497872 113498503 -7759027 - L1MC3 LINE L1 -2749 3397 2674 8 1450 1767 153 11 56 chr12 113499159 113499519 -7758011 - RLTR31A_Mm LTR ERVK -240 344 1 9 1450 297 221 135 87 chr12 113500651 113500755 -7756775 + PB1D10 SINE Alu 1 109 -8 1 1450 242 295 0 33 chr12 113500968 113501030 -7756500 + polypyrimidine Low_complexity Low_complexity 29 89 0 2 1450 195 42 0 0 chr12 113501030 113501054 -7756476 + (TCC)n Simple_repeat Simple_repeat 3 26 0 3 1450 242 295 0 33 chr12 113501054 113501082 -7756448 + polypyrimidine Low_complexity Low_complexity 2 28 0 4 1450 335 267 94 64 chr12 113502415 113502662 -7754868 + MIRb SINE MIR 1 246 -22 5 1450 232 337 30 20 chr12 113502676 113502776 -7754754 - L2a LINE L2 -13 3413 3313 6 1450 474 18 0 0 chr12 113505582 113505637 -7751893 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1450 423 0 0 0 chr12 113505637 113505683 -7751847 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1450 214 254 164 33 chr12 113505874 113505996 -7751534 + MIR SINE MIR 7 144 -118 9 1450 395 286 19 43 chr12 113506094 113506255 -7751275 - RSINE1 SINE B4 -6 159 3 1 1450 3351 158 23 14 chr12 113506889 113507455 -7750075 - RMER15 LTR ERVL -3 572 2 1 1450 1181 42 35 0 chr12 113508077 113508220 -7749310 + B1_Mus1 SINE Alu 1 148 0 1 1450 313 70 17 17 chr12 113508223 113508281 -7749249 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 1 1450 31 44 0 0 chr12 113508281 113508326 -7749204 + AT_rich Low_complexity Low_complexity 1 45 0 1 181 287 137 0 14 chr12 113508326 113508400 -7749130 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 1 1451 236 285 309 0 chr12 113508408 113508531 -7748999 - RSINE1 SINE B4 -1 164 4 1 1451 1176 68 0 0 chr12 113508780 113508928 -7748602 + B1_Mus1 SINE Alu 1 148 0 1 1451 221 157 0 19 chr12 113508928 113508970 -7748560 + A-rich Low_complexity Low_complexity 13 54 0 1 1451 504 229 67 0 chr12 113509310 113509415 -7748115 - B4A SINE B4 -179 113 2 1 1451 194 260 66 102 chr12 113509674 113509811 -7747719 + MIRm SINE MIR 145 276 0 2 1451 369 198 0 0 chr12 113509868 113509949 -7747581 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1451 182 310 183 0 chr12 113515873 113515944 -7741586 + MIR SINE MIR 41 124 -84 2 1451 285 199 26 48 chr12 113516827 113516916 -7740614 - MTEa LTR MaLR -14 405 274 2 1451 673 257 34 28 chr12 113519123 113519275 -7738255 + B3A SINE B2 6 159 -39 2 1451 441 0 0 0 chr12 113519275 113519324 -7738206 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1451 673 257 34 28 chr12 113519324 113519347 -7738183 + B3A SINE B2 160 182 -16 2 1451 446 240 0 7 chr12 113519349 113519500 -7738030 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 1451 297 235 30 12 chr12 113519534 113519698 -7737832 + (CATA)n Simple_repeat Simple_repeat 2 168 0 2 1451 526 254 174 0 chr12 113520398 113520536 -7736994 - RSINE1 SINE B4 0 165 4 2 1451 183 266 158 11 chr12 113520688 113520783 -7736747 - L2 LINE L2 -337 3082 2974 2 1451 501 319 38 30 chr12 113520864 113521126 -7736404 + L1MD LINE L1 3672 3935 -2211 3 1451 731 321 47 94 chr12 113521209 113521591 -7735939 - MTEa LTR MaLR -10 369 6 2 1451 413 324 126 80 chr12 113521626 113522743 -7734787 + L1MD LINE L1 4071 5239 -907 3 1451 324 83 0 0 chr12 113522824 113522872 -7734658 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1451 423 0 0 0 chr12 113522872 113522918 -7734612 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1451 411 260 265 0 chr12 113522931 113523150 -7734380 + L1MD LINE L1 5374 5650 -592 3 1451 687 25 0 0 chr12 113524212 113524293 -7733237 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 3 1451 1108 279 19 0 chr12 113525283 113525552 -7731978 - B4A SINE B4 -18 274 1 3 1451 235 324 6 82 chr12 113525824 113525982 -7731548 - LTR52 LTR ERVL -6 415 270 3 1451 202 261 0 0 chr12 113526301 113526347 -7731183 + G-rich Low_complexity Low_complexity 3 48 0 3 1451 200 325 75 35 chr12 113527109 113527285 -7730245 + MIRm SINE MIR 5 189 -87 3 1451 243 164 0 0 chr12 113532578 113532639 -7724891 + CT-rich Low_complexity Low_complexity 1 61 0 3 1451 282 29 0 0 chr12 113532639 113532674 -7724856 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1451 477 152 19 9 chr12 113534276 113534382 -7723148 + (TA)n Simple_repeat Simple_repeat 2 108 0 4 1451 279 0 0 0 chr12 113534382 113534413 -7723117 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1451 492 334 215 3 chr12 113534416 113534738 -7722792 + MLT1H-int LTR MaLR 273 666 -743 4 1451 447 279 106 7 chr12 113534738 113534879 -7722651 + B3A SINE B2 2 156 -42 4 1451 942 141 0 0 chr12 113534882 113535038 -7722492 + (TC)n Simple_repeat Simple_repeat 1 156 0 4 1451 293 218 82 35 chr12 113535496 113535667 -7721863 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 4 1451 253 206 97 22 chr12 113535681 113535815 -7721715 + (CTGTG)n Simple_repeat Simple_repeat 1 144 0 4 1451 307 212 82 35 chr12 113535829 113536000 -7721530 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 4 1451 321 206 82 35 chr12 113536014 113536185 -7721345 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 4 1451 507 324 62 29 chr12 113536229 113536537 -7720993 - L1MC1 LINE L1 -338 5995 5678 4 1451 587 247 81 56 chr12 113536602 113536799 -7720731 + MTEb LTR MaLR 173 374 -5 4 1451 473 252 40 40 chr12 113536847 113536996 -7720534 - L1MC1 LINE L1 -847 5299 5151 4 1451 245 326 44 22 chr12 113539253 113539344 -7718186 - MLT1H1 LTR MaLR -460 95 3 4 1451 339 360 55 73 chr12 113541741 113542068 -7715462 - MLT1J LTR MaLR -98 414 94 5 1451 558 108 0 0 chr12 113542356 113542439 -7715091 + (TG)n Simple_repeat Simple_repeat 1 83 0 5 1451 342 0 0 0 chr12 113542439 113542476 -7715054 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1451 389 374 117 15 chr12 113542786 113543041 -7714489 - HAL1 LINE L1 -203 2304 2023 5 1451 249 33 0 0 chr12 113543041 113543071 -7714459 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1451 389 374 117 15 chr12 113543071 113543089 -7714441 - HAL1 LINE L1 -485 2022 2004 5 1451 1013 65 0 0 chr12 113543089 113543228 -7714302 - B1_Mus2 SINE Alu 0 147 9 5 1451 309 298 74 30 chr12 113543571 113543706 -7713824 - HAL1 LINE L1 -750 1757 1617 5 1451 393 325 40 66 chr12 113544214 113544487 -7713043 - L1MD LINE L1 -440 5802 5537 5 1451 463 320 46 10 chr12 113544603 113544799 -7712731 - HAL1 LINE L1 -2183 324 122 5 1451 3153 144 11 37 chr12 113545269 113545810 -7711720 - RLTR11A2 LTR ERVK 0 527 1 5 1451 807 142 50 0 chr12 113545834 113545975 -7711555 - B1_Mur3 SINE Alu -1 148 1 5 1451 396 198 16 90 chr12 113546357 113546479 -7711051 - B3A SINE B2 0 198 86 5 1451 316 213 204 0 chr12 113547006 113547114 -7710416 - MLT1A0 LTR MaLR -107 258 129 6 1451 3948 112 5 28 chr12 113547177 113547812 -7709718 + RLTR5_Mm LTR ERV1 9 628 0 6 1451 900 0 0 0 chr12 113547997 113548097 -7709433 + (CA)n Simple_repeat Simple_repeat 1 100 0 6 1451 182 128 26 0 chr12 113549540 113549579 -7707951 + G-rich Low_complexity Low_complexity 1 40 0 6 1451 730 312 123 27 chr12 113550405 113550853 -7706677 - L1MA9 LINE L1 -234 6078 5588 6 1451 730 120 240 0 chr12 113551136 113551286 -7706244 - B2_Mm2 SINE B2 -9 186 1 6 1451 441 0 0 0 chr12 113551385 113551434 -7706096 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1451 373 333 88 0 chr12 113551555 113551795 -7705735 - L1MA9 LINE L1 -779 5521 5261 6 1451 429 54 0 0 chr12 113551938 113551994 -7705536 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1451 363 331 58 62 chr12 113552013 113552271 -7705259 - L1MA9 LINE L1 -923 5217 4961 6 1451 250 360 60 13 chr12 113552571 113552720 -7704810 - MLT1H1 LTR MaLR -307 248 93 6 1451 1009 293 73 28 chr12 113552885 113553048 -7704482 + MTEa LTR MaLR 6 166 -213 6 1451 195 42 0 0 chr12 113553048 113553072 -7704458 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1451 1009 293 73 28 chr12 113553072 113553266 -7704264 + MTEa LTR MaLR 167 378 -1 6 1451 4691 171 60 16 chr12 113553445 113554363 -7703167 - RMER17B LTR ERVK 0 958 1 7 1451 181 256 0 0 chr12 113554612 113554655 -7702875 + MIRc SINE MIR 105 147 -121 7 1451 259 268 107 71 chr12 113555519 113555716 -7701814 + L1M3e LINE L1 1229 1432 -5598 7 1451 220 250 0 35 chr12 113556006 113556064 -7701466 + GA-rich Low_complexity Low_complexity 5 60 0 7 1451 576 0 0 0 chr12 113556069 113556133 -7701397 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1451 259 322 32 12 chr12 113557626 113557758 -7699772 + MIRm SINE MIR 18 153 -55 7 1451 263 93 0 23 chr12 113557797 113557841 -7699689 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 7 1451 694 254 69 23 chr12 113557853 113558071 -7699459 + MER2 DNA MER2_type 118 345 0 7 1451 192 345 0 0 chr12 113558214 113558272 -7699258 + L2c LINE L2 3108 3165 -222 7 1451 1016 170 77 5 chr12 113558426 113558621 -7698909 - B3 SINE B2 -6 210 2 8 1451 294 284 132 19 chr12 113558816 113559028 -7698502 + L1M5 LINE L1 2927 3162 -2984 8 1451 355 313 86 0 chr12 113559111 113559274 -7698256 + L1MA7 LINE L1 6106 6282 -9 8 1451 484 332 115 21 chr12 113559278 113559521 -7698009 + B4A SINE B4 27 292 0 8 1451 239 246 46 91 chr12 113559638 113559708 -7697822 + L1M5 LINE L1 3331 3401 -2745 8 1451 838 232 205 9 chr12 113559708 113560025 -7697505 - MTEa LTR MaLR 0 379 1 8 1451 239 246 46 91 chr12 113560025 113560151 -7697379 + L1M5 LINE L1 3402 3518 -2628 8 1451 678 256 56 33 chr12 113560179 113560419 -7697111 + B4 SINE B4 1 246 -46 8 1451 255 152 0 0 chr12 113560437 113560483 -7697047 + GA-rich Low_complexity Low_complexity 1 46 0 8 1451 701 266 125 0 chr12 113560489 113560737 -7696793 + B4A SINE B4 2 280 -12 8 1451 507 60 0 0 chr12 113560745 113560812 -7696718 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1451 213 328 0 0 chr12 113560854 113560921 -7696609 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1451 784 277 38 113 chr12 113561220 113561566 -7695964 + MTE2a LTR MaLR 58 377 -2 8 1451 234 225 96 27 chr12 113566123 113566196 -7691334 + Lx4A LINE L1 6919 6996 -62 9 1451 317 226 169 42 chr12 113566470 113566636 -7690894 - MLT1D LTR MaLR -186 319 133 9 1451 1019 250 113 0 chr12 113567449 113567785 -7689745 + MTEb LTR MaLR 5 378 -1 9 1451 220 193 17 34 chr12 113567834 113567893 -7689637 + L2c LINE L2 3131 3188 -199 9 1451 516 348 88 8 chr12 113568156 113568521 -7689009 + L3 LINE CR1 3244 3637 -852 9 1451 219 36 0 0 chr12 113568691 113568719 -7688811 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 9 1451 225 336 88 0 chr12 113569603 113569634 -7687896 - B4A SINE B4 -56 236 101 9 1451 406 298 0 0 chr12 113569634 113569728 -7687802 - PB1D10 SINE Alu -8 109 16 9 1451 345 292 100 0 chr12 113570126 113570256 -7687274 - MLT1B LTR MaLR -38 352 210 9 1451 230 258 10 61 chr12 113570258 113570357 -7687173 + GA-rich Low_complexity Low_complexity 2 95 0 9 1451 371 221 230 0 chr12 113570370 113570483 -7687047 - MLT1B LTR MaLR -238 152 14 9 1451 375 154 55 0 chr12 113570837 113570928 -7686602 + GA-rich Low_complexity Low_complexity 3 98 0 1 1451 225 211 0 0 chr12 113571519 113571571 -7685959 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1451 249 98 0 0 chr12 113578637 113578678 -7678852 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1451 231 211 14 40 chr12 113579025 113579099 -7678431 + L1M3e LINE L1 1075 1146 -5884 1 1451 802 156 150 0 chr12 113580343 113580503 -7677027 + B3 SINE B2 3 186 -30 1 1451 316 167 203 27 chr12 113584428 113584502 -7673028 + PB1D10 SINE Alu 5 91 -26 1 1451 206 156 22 0 chr12 113584502 113584547 -7672983 + GA-rich Low_complexity Low_complexity 2 47 0 1 1451 1161 312 75 85 chr12 113584589 113585444 -7672086 - L1MA6 LINE L1 -7 6293 5448 1 1451 2414 69 0 0 chr12 113585444 113585762 -7671768 - MTB_Mm LTR MaLR 0 407 90 1 1451 1072 102 0 0 chr12 113585901 113586048 -7671482 + B1_Mus1 SINE Alu 2 148 0 1 1451 297 0 0 0 chr12 113586055 113586088 -7671442 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1451 661 268 92 13 chr12 113586093 113586331 -7671199 - L1MA6 LINE L1 -869 5274 5018 1 1451 227 330 39 20 chr12 113586332 113586434 -7671096 + L1_Mur3 LINE L1 3786 3889 -1991 1 1451 1188 315 95 30 chr12 113586671 113587297 -7670233 + L1M2 LINE L1 4151 4789 -1354 1 1451 675 0 0 0 chr12 113587297 113587372 -7670158 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1451 1188 315 95 30 chr12 113587372 113587564 -7669966 + L1M2 LINE L1 4790 5021 -1122 1 1451 256 340 49 0 chr12 113587693 113587855 -7669675 + L1MEg LINE L1 1306 1475 -4940 1 1451 439 391 51 21 chr12 113588144 113588828 -7668702 + L1MEg LINE L1 1772 2480 -3920 1 1451 500 328 93 54 chr12 113589631 113589985 -7667545 + L1MEg LINE L1 3543 3910 -2409 1 1451 1187 255 22 4 chr12 113590218 113590493 -7667037 + B4 SINE B4 8 287 -5 1 1451 295 83 33 0 chr12 113590880 113590940 -7666590 + (CAA)n Simple_repeat Simple_repeat 2 63 0 1 1451 1002 230 32 36 chr12 113591009 113591289 -7666241 + MTEb LTR MaLR 2 280 -99 1 1451 3045 242 21 33 chr12 113591676 113592879 -7664651 + Lx7 LINE L1 855 2053 -3827 1 1451 506 219 226 41 chr12 113592896 113593139 -7664391 + Lx7 LINE L1 2740 3027 -2853 1 1451 1116 86 75 0 chr12 113593141 113593315 -7664215 + B2_Mm1t SINE B2 6 192 -1 1 1451 10725 205 66 18 chr12 113593320 113593901 -7663629 + Lx7 LINE L1 3047 3682 -2198 1 1451 333 0 0 0 chr12 113593901 113593938 -7663592 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1451 10725 205 66 18 chr12 113593938 113594589 -7662941 + Lx7 LINE L1 3683 4364 -1516 1 1451 267 31 0 0 chr12 113594589 113594621 -7662909 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1451 10725 206 63 21 chr12 113594621 113596238 -7661292 + Lx7 LINE L1 4365 6034 -1662 1 1451 3116 270 73 59 chr12 113596240 113596635 -7660895 + Lx7 LINE L1 6239 6617 -1079 1 1451 2442 71 6 3 chr12 113596635 113596961 -7660569 - ORR1A2 LTR MaLR 0 327 1 1 1451 3015 53 7 22 chr12 113596967 113597373 -7660157 - MTB LTR MaLR 0 400 1 1 1451 3116 270 73 59 chr12 113597373 113598129 -7659401 + Lx7 LINE L1 6618 7414 -282 1 1451 213 94 0 0 chr12 113598315 113598347 -7659183 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1451 1674 159 99 18 chr12 113598643 113598975 -7658555 - MTC LTR MaLR -60 361 3 1 1451 263 229 99 18 chr12 113599686 113599797 -7657733 + L1M5 LINE L1 5679 5798 -442 1 1451 269 324 66 9 chr12 113600007 113600113 -7657417 + MLT1A0 LTR MaLR 8 119 -246 1 1451 258 250 125 36 chr12 113600147 113600259 -7657271 + MLT1A0 LTR MaLR 274 395 -13 1 1451 577 325 37 41 chr12 113601165 113601383 -7656147 - ID_B1 SINE B4 0 224 8 1 1451 270 0 0 0 chr12 113601400 113601430 -7656100 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1451 1000 270 109 3 chr12 113602584 113602915 -7654615 - MTEb LTR MaLR -13 366 1 1 1451 252 208 9 47 chr12 113603037 113603143 -7654387 + (CAAA)n Simple_repeat Simple_repeat 1 102 0 1 1451 314 274 25 8 chr12 113603221 113603339 -7654191 + L1MC4 LINE L1 1438 1557 -4685 1 1451 583 226 4 8 chr12 113603450 113603696 -7653834 + (TG)n Simple_repeat Simple_repeat 1 244 0 1 1451 313 339 77 67 chr12 113603721 113603930 -7653600 - B4 SINE B4 -11 281 71 1 1451 791 198 53 18 chr12 113603937 113604107 -7653423 - B3 SINE B2 -40 176 1 1 1451 445 327 60 75 chr12 113604181 113604835 -7652695 + L1MC4 LINE L1 4216 4859 -1287 1 1451 420 291 40 26 chr12 113605016 113605244 -7652286 - RMER15 LTR ERVL -18 557 300 1 1451 318 263 35 93 chr12 113605233 113605405 -7652125 - RMER15 LTR ERVL -389 186 25 1 1451 417 95 0 0 chr12 113605465 113605528 -7652002 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1451 475 292 47 44 chr12 113605562 113605775 -7651755 - B4 SINE B4 -86 206 2 1 1451 293 256 0 65 chr12 113606277 113606369 -7651161 + RMER30 DNA MER1_type 78 163 -39 1 1451 454 271 51 36 chr12 113606435 113606620 -7650910 + L1MC4 LINE L1 5593 5784 -390 1 1451 255 280 32 11 chr12 113606919 113607013 -7650517 + CT-rich Low_complexity Low_complexity 3 98 0 1 1451 236 268 24 0 chr12 113607069 113607151 -7650379 + L1MC4 LINE L1 6454 6537 -1505 1 1451 183 80 0 0 chr12 113610560 113610585 -7646945 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 1 1451 319 89 36 0 chr12 113611319 113611375 -7646155 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1451 301 271 198 42 chr12 113611528 113611740 -7645790 - MLT1E3 LTR MaLR -3 621 377 1 1451 1070 48 181 6 chr12 113612061 113612227 -7645303 + B2_Mm2 SINE B2 1 195 0 1 1451 382 261 161 5 chr12 113612751 113612944 -7644586 - L1MC3 LINE L1 -166 7619 7397 1 1451 944 291 61 58 chr12 113613006 113613382 -7644148 + MTEa LTR MaLR 1 377 -2 1 1451 279 276 9 55 chr12 113615971 113616112 -7641418 + MLT1C LTR MaLR 60 190 -200 1 1451 271 289 12 10 chr12 113617633 113617730 -7639800 + MLT1C LTR MaLR 263 404 -4 1 1451 648 124 0 0 chr12 113618153 113618258 -7639272 + (TGAA)n Simple_repeat Simple_repeat 3 107 0 1 1451 253 252 92 18 chr12 113620198 113620307 -7637223 + MIRb SINE MIR 120 236 -32 1 1451 445 193 5 11 chr12 113620983 113621088 -7636442 - MTC LTR MaLR 0 421 260 1 1451 417 349 135 15 chr12 113621635 113621729 -7635801 + L1MEc LINE L1 653 764 -5636 1 1451 559 13 51 0 chr12 113621729 113621807 -7635723 + (TAAAA)n Simple_repeat Simple_repeat 1 82 0 1 1451 417 349 135 15 chr12 113621807 113622186 -7635344 + L1MEc LINE L1 765 1182 -5218 1 1451 1539 218 44 19 chr12 113622353 113622714 -7634816 - ORR1D1 LTR MaLR -4 370 1 1 1451 221 320 53 0 chr12 113622757 113622832 -7634698 + ID2 SINE ID 3 81 -2 1 1451 312 304 18 91 chr12 113622958 113623016 -7634514 + L1MEc LINE L1 1652 1709 -4691 1 1451 486 0 0 0 chr12 113623016 113623070 -7634460 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1451 312 308 21 91 chr12 113623070 113623265 -7634265 + L1MEc LINE L1 1710 1893 -4522 1 1451 1066 186 14 58 chr12 113623269 113623459 -7634071 + B3 SINE B2 2 194 -22 1 1451 549 99 0 0 chr12 113623459 113623540 -7633990 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1451 1066 186 14 58 chr12 113623540 113623572 -7633958 + B3 SINE B2 195 214 -2 1 1451 1617 218 178 36 chr12 113623891 113624415 -7633115 - RMER20B LTR ERVK -22 605 8 1 1451 992 50 50 0 chr12 113624420 113624560 -7632970 + B2_Mm2 SINE B2 7 153 -42 1 1451 342 0 0 0 chr12 113624572 113624610 -7632920 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1451 23 0 0 0 chr12 113624640 113624663 -7632867 + AT_rich Low_complexity Low_complexity 1 23 0 1 1451 442 305 185 9 chr12 113625027 113625368 -7632162 + L1MEc LINE L1 2714 3114 -3205 1 1451 267 286 43 32 chr12 113625371 113625465 -7632065 - RLTR23 LTR ERV1 -3 427 333 1 1451 244 236 56 0 chr12 113625863 113625935 -7631595 + L1MEc LINE L1 3111 3186 -3133 1 1451 197 204 45 8 chr12 113626037 113626170 -7631360 + (TA)n Simple_repeat Simple_repeat 1 138 0 1 1451 427 319 128 51 chr12 113626522 113626626 -7630904 + L1M5 LINE L1 3032 3138 -3008 1 1451 821 157 0 52 chr12 113626626 113626781 -7630749 + B1_Mus1 SINE Alu 2 148 0 1 1451 485 304 145 42 chr12 113626781 113627591 -7629939 + L1M5 LINE L1 3139 4016 -2130 1 1451 207 0 0 0 chr12 113627593 113627616 -7629914 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1451 261 83 0 0 chr12 113627951 113627987 -7629543 + (AGGGGG)n Simple_repeat Simple_repeat 4 39 0 1 1451 326 297 91 6 chr12 113627987 113628163 -7629367 + Lx8 LINE L1 7214 7404 -69 1 1451 317 312 14 21 chr12 113628365 113628506 -7629024 + Lx8 LINE L1 7329 7468 -5 1 1451 324 188 0 0 chr12 113628520 113628584 -7628946 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1451 262 339 9 26 chr12 113628759 113628874 -7628656 + L1MD LINE L1 4808 4920 -1226 1 1451 366 262 47 0 chr12 113628933 113629040 -7628490 + L1M5 LINE L1 5679 5790 -389 1 1451 510 61 0 0 chr12 113629235 113629301 -7628229 + (GGA)n Simple_repeat Simple_repeat 3 68 0 1 1451 608 314 84 28 chr12 113629410 113629659 -7627871 + B4A SINE B4 30 292 0 1 1451 1177 211 5 0 chr12 113630426 113630639 -7626891 - B3 SINE B2 0 216 3 1 1451 353 357 38 0 chr12 113630834 113630991 -7626539 + L1MC4a LINE L1 4453 4615 -1531 1 1451 488 307 52 22 chr12 113631921 113632352 -7625178 + L1MC4a LINE L1 5149 5593 -740 1 1451 249 329 14 27 chr12 113634171 113634318 -7623212 + L1MC4a LINE L1 5782 5926 -1956 1 1451 3169 48 0 12 chr12 113635361 113635766 -7621764 - MTB LTR MaLR 0 400 1 1 1451 183 80 0 0 chr12 113636407 113636432 -7621098 + (TGG)n Simple_repeat Simple_repeat 2 26 0 1 1451 1481 215 97 29 chr12 113637284 113637667 -7619863 + MTD LTR MaLR 10 418 -1 1 1451 515 232 94 55 chr12 113637668 113637869 -7619661 + MTD-int LTR MaLR 1 209 -1049 1 1451 3093 50 5 0 chr12 113637900 113638297 -7619233 + MTB LTR MaLR 2 400 0 1 1451 1007 263 87 14 chr12 113638400 113638747 -7618783 + MTD-int LTR MaLR 274 645 -613 1 181 1160 225 126 47 chr12 113639096 113639437 -7618093 - ORR1D2 LTR MaLR 0 370 3 1 1452 531 0 0 0 chr12 113639454 113639513 -7618017 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1452 2047 155 36 14 chr12 113640735 113641094 -7616436 + ORR1B2 LTR MaLR 1 367 0 1 1452 627 346 73 85 chr12 113641520 113641956 -7615574 - Tigger7 DNA MER2_type -251 454 24 1 1452 720 103 0 0 chr12 113643107 113643214 -7614316 + (TG)n Simple_repeat Simple_repeat 1 107 0 1 1452 2298 96 12 0 chr12 113646436 113646759 -7610771 + ORR1A2 LTR MaLR 1 327 0 1 1452 849 220 33 23 chr12 113646945 113647159 -7610371 + B3 SINE B2 1 216 0 1 1452 398 250 28 19 chr12 113647502 113647608 -7609922 + PB1D10 SINE Alu 4 110 -7 1 1452 684 0 0 0 chr12 113647980 113648056 -7609474 + (CTGTG)n Simple_repeat Simple_repeat 3 78 0 1 1452 842 196 52 6 chr12 113648318 113648492 -7609038 + B3A SINE B2 1 182 -16 1 1452 206 192 19 0 chr12 113648511 113648563 -7608967 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 1 1452 295 261 159 59 chr12 113648877 113649097 -7608433 + L2c LINE L2 3133 3386 -1 1 1452 216 0 0 0 chr12 113649418 113649442 -7608088 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1452 216 0 0 0 chr12 113649522 113649546 -7607984 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1452 736 285 0 35 chr12 113651477 113651604 -7605926 + RSINE1 SINE B4 1 122 -43 1 1452 3373 39 0 2 chr12 113651604 113652012 -7605518 + MTB_Mm LTR MaLR 1 407 0 1 1452 736 285 0 35 chr12 113652012 113652055 -7605475 + RSINE1 SINE B4 123 165 0 1 1452 200 265 0 0 chr12 113652056 113652105 -7605425 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1452 203 138 0 0 chr12 113652105 113652134 -7605396 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1 1452 222 37 0 0 chr12 113654076 113654103 -7603427 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1452 499 331 69 3 chr12 113654112 113654445 -7603085 + L1M4c LINE L1 1309 1663 -4721 2 1452 1006 313 98 84 chr12 113654727 113655519 -7602011 + L1M4c LINE L1 2887 3730 -2652 2 1452 500 201 56 35 chr12 113655519 113655663 -7601867 + B1_Mur1 SINE Alu 1 147 -2 2 1452 1006 313 98 84 chr12 113655663 113656036 -7601494 + L1M4c LINE L1 3731 4068 -2314 2 1452 751 330 136 14 chr12 113656043 113656603 -7600927 + L1M4c LINE L1 4203 4830 -1552 2 1452 377 243 172 7 chr12 113656994 113657139 -7600391 + L1M4c LINE L1 5240 5408 -974 2 1452 1232 91 17 0 chr12 113657141 113657317 -7600213 + B2_Mm1t SINE B2 1 179 -14 2 1452 452 74 327 18 chr12 113657365 113657475 -7600055 + B2_Mm2 SINE B2 47 190 -5 2 1452 1599 6 0 0 chr12 113657512 113657692 -7599838 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 2 1452 754 318 27 5 chr12 113657700 113658124 -7599406 + L1M4c LINE L1 5442 5873 -543 2 1452 5257 33 0 0 chr12 113658468 113659102 -7598428 + L1Md_T LINE L1 5949 6582 0 2 1452 396 0 0 0 chr12 113659132 113659176 -7598354 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 1452 258 32 0 0 chr12 113659412 113659443 -7598087 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1452 300 306 21 76 chr12 113659454 113659599 -7597931 - L1MCa LINE L1 -4549 1959 1823 2 1452 562 260 239 19 chr12 113659734 113660044 -7597486 - MTEa LTR MaLR 0 379 2 2 1452 227 333 0 40 chr12 113660804 113660879 -7596651 - ID4 SINE ID 0 83 12 2 1452 537 209 18 0 chr12 113661973 113662083 -7595447 + B3A SINE B2 15 126 -72 2 1452 326 23 23 0 chr12 113662085 113662128 -7595402 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1452 1071 171 5 5 chr12 113662157 113662345 -7595185 + B3 SINE B2 4 191 -25 2 1452 698 281 30 39 chr12 113662774 113662979 -7594551 - MLT1B LTR MaLR -159 231 22 2 1452 403 250 307 81 chr12 113662979 113663288 -7594242 - MTE2a LTR MaLR 0 379 1 2 1452 698 281 30 39 chr12 113663288 113663315 -7594215 - MLT1B LTR MaLR -369 21 1 2 1452 441 0 0 0 chr12 113665395 113665444 -7592086 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1452 252 0 0 0 chr12 113671155 113671183 -7586347 + (CAGGG)n Simple_repeat Simple_repeat 3 30 0 2 1452 641 130 150 42 chr12 113672593 113672713 -7584817 + B1_Mur1 SINE Alu 2 134 -15 2 1452 317 24 24 0 chr12 113672713 113672755 -7584775 + (CAAT)n Simple_repeat Simple_repeat 3 45 0 2 1452 253 232 62 104 chr12 113672773 113672869 -7584661 - MTEa LTR MaLR -286 93 2 2 1452 695 145 21 8 chr12 113674537 113674785 -7582745 + (CA)n Simple_repeat Simple_repeat 1 251 0 2 1452 306 130 0 18 chr12 113674810 113674865 -7582665 + HAL1-3A_ME LINE L1 1974 2027 -831 2 1452 540 0 0 0 chr12 113675742 113675802 -7581728 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1452 996 136 143 36 chr12 113677364 113677616 -7579914 - Lx9 LINE L1 -1 7643 7365 2 1452 2001 182 74 25 chr12 113677617 113678051 -7579479 + Lx9 LINE L1 6873 7327 -317 2 1452 816 121 0 0 chr12 113678569 113678710 -7578820 + (TCCC)n Simple_repeat Simple_repeat 3 143 0 2 1452 860 331 69 18 chr12 113679384 113679818 -7577712 - L1MC3 LINE L1 -141 7644 7189 2 1452 391 309 62 6 chr12 113679864 113680043 -7577487 - L1MC3 LINE L1 -710 7075 6887 2 1452 543 179 0 0 chr12 113680059 113680165 -7577365 + (TG)n Simple_repeat Simple_repeat 2 107 0 2 1452 948 270 82 55 chr12 113681720 113682049 -7575481 + MTE2a LTR MaLR 3 340 -39 2 1452 951 254 103 26 chr12 113682591 113682862 -7574668 + B4 SINE B4 1 292 0 2 1452 996 203 269 33 chr12 113685195 113685500 -7572030 + MTEa LTR MaLR 1 377 -2 2 1452 926 211 29 19 chr12 113685519 113685727 -7571803 + ORR1B1 LTR MaLR 1 210 -184 2 1452 651 282 87 21 chr12 113685694 113685902 -7571628 + MT2A LTR ERVL 294 545 -17 2 1452 358 330 108 32 chr12 113685919 113686198 -7571332 - L1MC3 LINE L1 -1222 6563 6264 2 1452 993 62 0 20 chr12 113686299 113686448 -7571082 + (TCTCCC)n Simple_repeat Simple_repeat 3 148 0 2 1452 995 172 87 15 chr12 113686450 113686645 -7570885 - B3 SINE B2 -7 209 1 2 1452 547 259 74 41 chr12 113686791 113687036 -7570494 + ORR1E LTR MaLR 3 241 -129 2 1452 440 261 79 26 chr12 113687226 113687340 -7570190 - RSINE1 SINE B4 -2 163 44 2 1452 1413 273 31 50 chr12 113687483 113688004 -7569526 - L1MC3 LINE L1 -2012 5773 5263 2 1452 578 273 134 48 chr12 113688016 113688285 -7569245 + MER89 LTR ERV1 1 292 -267 2 1452 232 299 75 0 chr12 113688963 113689030 -7568500 + MER20 DNA MER1_type 6 77 -142 2 1452 745 212 28 90 chr12 113689123 113689335 -7568195 - B3 SINE B2 -7 209 11 2 1452 1890 158 12 83 chr12 113689335 113689582 -7567948 + ORR1C1 LTR MaLR 1 227 -151 2 1452 2788 179 49 16 chr12 113689582 113690132 -7567398 + RLTR12A LTR ERVK 1 568 0 2 1452 1890 158 12 83 chr12 113690132 113690291 -7567239 + ORR1C1 LTR MaLR 228 378 0 2 1452 373 307 36 14 chr12 113690320 113690491 -7567039 - L1MC3 LINE L1 -2713 3433 3258 2 1452 249 372 62 21 chr12 113690856 113691048 -7566482 - L1MC3 LINE L1 -3301 2845 2646 2 1452 254 282 23 34 chr12 113691311 113691399 -7566131 - RLTR25B LTR ERVK -501 527 441 2 1452 522 235 0 38 chr12 113691331 113691437 -7566093 - B1_Mus2 SINE Alu -44 103 2 2 1452 561 324 105 44 chr12 113691619 113692264 -7565266 + L1ME2 LINE L1 5308 6000 -164 2 1452 582 217 8 0 chr12 113692336 113692456 -7565074 + L1MA10 LINE L1 6211 6331 -3 2 1452 198 0 0 0 chr12 113692526 113692548 -7564982 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1452 666 262 16 145 chr12 113692728 113692986 -7564544 - MTEa LTR MaLR -45 334 117 2 1452 1094 250 117 15 chr12 113692986 113693319 -7564211 - ORR1D2 LTR MaLR -2 368 2 2 1452 666 262 16 145 chr12 113693319 113693377 -7564153 - MTEa LTR MaLR -263 116 59 2 1452 509 0 16 0 chr12 113693377 113693438 -7564092 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1452 285 128 0 0 chr12 113693720 113693767 -7563763 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1452 1181 68 0 0 chr12 113695040 113695187 -7562343 + B1_Mm SINE Alu 1 147 0 2 1452 1122 112 0 0 chr12 113695199 113695368 -7562162 + (GAA)n Simple_repeat Simple_repeat 2 170 0 2 1452 444 171 0 0 chr12 113695473 113695584 -7561946 + (TG)n Simple_repeat Simple_repeat 2 112 0 2 1452 222 294 0 21 chr12 113695638 113695799 -7561731 + (TATG)n Simple_repeat Simple_repeat 1 157 0 2 1452 479 185 195 19 chr12 113697782 113697936 -7559594 + B2_Mm2 SINE B2 6 186 -9 2 1452 970 189 54 15 chr12 113701542 113701746 -7555784 - B3 SINE B2 0 216 5 2 1452 227 324 48 19 chr12 113702323 113702427 -7555103 + ORR1E LTR MaLR 18 124 -235 2 1452 207 0 0 0 chr12 113706518 113706541 -7550989 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 2 1452 1032 260 91 3 chr12 113707521 113707807 -7549723 + MTE2a LTR MaLR 69 379 0 2 1452 307 290 0 0 chr12 113709619 113709688 -7547842 + (CTAGGG)n Simple_repeat Simple_repeat 3 71 0 2 1452 291 140 0 0 chr12 113709738 113709788 -7547742 + (TTAGGG)n Simple_repeat Simple_repeat 4 53 0 2 1452 4540 16 0 0 chr12 113715276 113715769 -7541761 - MT2_Mm LTR ERVL 0 493 1 2 1452 684 0 0 0 chr12 113718764 113718840 -7538690 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 1452 2620 57 70 3 chr12 113720551 113720923 -7536607 - MTB_Mm LTR MaLR -3 404 8 2 1452 1055 144 204 21 chr12 113721148 113721339 -7536191 + URR1A DNA MER1_type 1 226 0 2 1452 1136 44 0 42 chr12 113722818 113722961 -7534569 - B1_Mus1 SINE Alu -11 137 1 2 1452 193 200 0 0 chr12 113723061 113723096 -7534434 - L3 LINE CR1 -117 4372 4338 2 1452 316 341 103 46 chr12 113723628 113723889 -7533641 - MLT1D LTR MaLR -229 276 1 2 1452 1215 105 0 0 chr12 113724694 113725219 -7532311 + (TG)n Simple_repeat Simple_repeat 1 525 0 2 1452 256 294 69 0 chr12 113725285 113725387 -7532143 + MLT1D LTR MaLR 249 357 -148 2 1452 315 49 0 0 chr12 113725845 113725886 -7531644 + HAL1-3A_ME LINE L1 1972 2012 -846 2 1452 243 333 0 0 chr12 113725886 113725961 -7531569 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1452 297 284 0 0 chr12 113725976 113726117 -7531413 + (CA)n Simple_repeat Simple_repeat 1 141 0 2 1452 324 0 0 0 chr12 113728644 113728680 -7528850 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1452 227 301 0 0 chr12 113729345 113729418 -7528112 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1452 21 0 0 0 chr12 113729969 113729990 -7527540 + AT_rich Low_complexity Low_complexity 1 21 0 2 1452 369 203 37 8 chr12 113730579 113730825 -7526705 + (CA)n Simple_repeat Simple_repeat 1 253 0 2 1452 488 176 36 6 chr12 113730851 113731017 -7526513 + (CA)n Simple_repeat Simple_repeat 2 172 0 2 1452 330 167 0 0 chr12 113731241 113731301 -7526229 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1452 470 232 161 5 chr12 113731332 113731486 -7526044 + B3 SINE B2 2 182 -34 2 1452 1134 79 11 22 chr12 113731486 113731667 -7525863 + (CATA)n Simple_repeat Simple_repeat 1 179 0 2 1452 470 232 161 5 chr12 113731667 113731698 -7525832 + B3 SINE B2 183 215 -1 2 1452 258 256 7 70 chr12 113732551 113732694 -7524836 + (CAGAGA)n Simple_repeat Simple_repeat 3 136 0 2 1452 180 244 0 0 chr12 113740030 113740071 -7517459 - L3 LINE CR1 -2744 1745 1705 2 1452 1821 169 130 3 chr12 113741677 113742039 -7515491 + MTC LTR MaLR 6 413 -8 2 1452 1576 226 45 12 chr12 113744398 113744771 -7512759 + MTD LTR MaLR 1 365 -35 2 1452 292 69 33 33 chr12 113745359 113745419 -7512111 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 2 1452 786 129 0 18 chr12 113748269 113748435 -7509095 + (CA)n Simple_repeat Simple_repeat 1 163 0 2 1452 1027 194 76 10 chr12 113751109 113751307 -7506223 + B3 SINE B2 1 211 -5 2 1452 900 324 108 0 chr12 113751350 113751720 -7505810 - MLT2D LTR ERVL 0 414 5 2 1452 852 72 0 0 chr12 113751774 113751899 -7505631 + (TG)n Simple_repeat Simple_repeat 2 126 0 2 1452 612 240 0 0 chr12 113751911 113752040 -7505490 - B1_Mur1 SINE Alu -20 129 1 2 1452 264 270 20 118 chr12 113752040 113752100 -7505430 - MT2B2 LTR ERVL -448 153 100 2 1452 1187 81 0 0 chr12 113752366 113752514 -7505016 + B1_Mus1 SINE Alu 1 148 0 2 1452 350 129 0 16 chr12 113752514 113752577 -7504953 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 2 1452 270 333 55 27 chr12 113752603 113752890 -7504640 + L1MD LINE L1 4047 4334 -1812 2 1452 265 316 40 0 chr12 113753052 113753128 -7504402 - HERV16-int LTR ERVL -3224 1772 1694 2 1452 387 196 153 10 chr12 113753654 113753752 -7503778 - MLT1D LTR MaLR -145 360 249 2 1452 310 350 25 8 chr12 113754071 113754192 -7503338 + Lx8 LINE L1 7048 7170 -303 2 1452 409 264 161 0 chr12 113754272 113754427 -7503103 + RMER15 LTR ERVL 396 575 0 2 1452 838 347 117 28 chr12 113754431 113754751 -7502779 + RMER15-int LTR ERVL 13 365 -4634 2 1452 2579 102 0 3 chr12 113754751 113755096 -7502434 - ORR1A1 LTR MaLR 0 346 3 2 1452 838 347 117 28 chr12 113755096 113755315 -7502215 + RMER15-int LTR ERVL 366 600 -4399 2 1452 438 282 74 0 chr12 113755319 113755468 -7502062 + RMER15-int LTR ERVL 744 903 -4096 2 1452 593 269 159 0 chr12 113755491 113755673 -7501857 + RMER15-int LTR ERVL 974 1184 -3815 2 1452 198 0 0 0 chr12 113755913 113755935 -7501595 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1452 430 342 48 21 chr12 113757227 113757415 -7500115 + B3A SINE B2 3 195 -3 3 1452 1218 49 0 0 chr12 113757416 113757558 -7499972 - B1_Mus2 SINE Alu -5 142 1 3 1452 2257 103 55 0 chr12 113758356 113758666 -7498864 - ORR1A2 LTR MaLR 0 327 1 3 1452 271 184 13 26 chr12 113759781 113759859 -7497671 + CT-rich Low_complexity Low_complexity 3 79 0 3 1452 301 296 131 39 chr12 113759862 113759992 -7497538 - HAL1-3A_ME LINE L1 -658 2200 2059 3 1452 33 25 0 0 chr12 113760074 113760114 -7497416 + AT_rich Low_complexity Low_complexity 1 40 0 3 1452 3951 192 63 72 chr12 113760528 113761144 -7496386 - RMER17B LTR ERVK 0 958 359 3 1452 1031 78 0 0 chr12 113761144 113761272 -7496258 + B1_Mus2 SINE Alu 1 128 -19 3 1452 3951 192 63 72 chr12 113761272 113761622 -7495908 - RMER17B LTR ERVK -600 358 1 3 1452 21 0 0 0 chr12 113762247 113762268 -7495262 + GC_rich Low_complexity Low_complexity 1 21 0 3 1452 211 178 22 0 chr12 113762578 113762623 -7494907 + B4 SINE B4 2 47 -245 3 1452 246 116 0 0 chr12 113762973 113763016 -7494514 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1452 3634 134 94 37 chr12 113764069 113764774 -7492756 - RMER1B Other Other -4 1062 318 3 1452 3260 68 2 12 chr12 113764788 113765192 -7492338 + MTB LTR MaLR 1 400 0 3 1452 206 163 0 20 chr12 113765241 113765291 -7492239 + T-rich Low_complexity Low_complexity 2 50 0 3 1452 1288 163 5 0 chr12 113765420 113765623 -7491907 - B3 SINE B2 -12 204 1 3 1452 292 312 86 11 chr12 113765774 113765949 -7491581 - MER68 LTR ERVL -110 453 266 3 1452 574 299 62 38 chr12 113766210 113766450 -7491080 - MLT1B LTR MaLR -16 374 129 3 1452 22 0 0 0 chr12 113766469 113766491 -7491039 + AT_rich Low_complexity Low_complexity 1 22 0 3 1452 4782 147 33 38 chr12 113767642 113768481 -7489049 - Lx4B LINE L1 -6 7052 6218 3 1452 198 0 0 0 chr12 113769324 113769346 -7488184 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1452 5260 24 0 0 chr12 113769346 113769931 -7487599 + L1Md_F3 LINE L1 5986 6570 -14 3 1452 1069 105 12 6 chr12 113769945 113770118 -7487412 + ORR1A3-int LTR MaLR 1030 1203 -760 3 1452 468 35 0 0 chr12 113770144 113770202 -7487328 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1453 277 333 14 14 chr12 113772399 113772539 -7484991 + (TCCA)n Simple_repeat Simple_repeat 4 143 0 3 1453 229 248 9 9 chr12 113772560 113772674 -7484856 + CT-rich Low_complexity Low_complexity 2 115 0 3 1453 2868 181 72 7 chr12 113773105 113773671 -7483859 - RMER20B LTR ERVK -24 603 1 3 1453 226 345 12 0 chr12 113773717 113773780 -7483750 - 7SK RNA RNA -89 242 179 3 1453 1294 228 71 83 chr12 113773780 113774236 -7483294 - RMER16 LTR ERVK 0 533 1 3 1453 254 312 14 101 chr12 113774664 113774803 -7482727 + MER21B LTR ERV1 560 686 -177 3 1453 24 53 0 0 chr12 113774860 113774898 -7482632 + AT_rich Low_complexity Low_complexity 1 38 0 3 1453 312 297 54 9 chr12 113774900 113775012 -7482518 - RMER15 LTR ERVL -40 535 419 3 1453 875 45 305 0 chr12 113775112 113775277 -7482253 + MTA_Mm LTR MaLR 198 421 0 3 1453 1091 274 51 12 chr12 113775313 113775645 -7481885 + ORR1E LTR MaLR 10 354 -5 3 1453 548 288 95 9 chr12 113776058 113776268 -7481262 - Lx8 LINE L1 -1033 6440 6213 3 1453 914 284 76 22 chr12 113777446 113777763 -7479767 - RMER15-int LTR ERVL -4228 771 438 3 1453 261 0 0 0 chr12 113777960 113777989 -7479541 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1453 537 269 12 30 chr12 113778056 113778221 -7479309 - RMER15 LTR ERVL -78 497 336 3 1453 429 20 0 0 chr12 113778260 113778310 -7479220 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1453 905 342 84 11 chr12 113778650 113779128 -7478402 + Kanga1a DNA Tc2 221 733 -21 3 1453 253 379 118 10 chr12 113779445 113780029 -7477501 + L1MC LINE L1 4123 4765 -1381 3 1453 232 308 8 32 chr12 113782245 113782369 -7475161 + G-rich Low_complexity Low_complexity 4 124 0 3 1453 306 272 127 0 chr12 113783983 113784125 -7473405 + L1M5 LINE L1 2419 2578 -3568 3 1453 303 327 29 35 chr12 113784339 113784510 -7473020 + RLTR21 LTR ERVK 1085 1254 -318 3 1453 496 254 9 0 chr12 113784510 113784850 -7472680 + (TG)n Simple_repeat Simple_repeat 1 343 0 3 1453 490 276 51 84 chr12 113784853 113785067 -7472463 - B4 SINE B4 -2 290 84 3 1453 626 256 36 65 chr12 113785149 113785396 -7472134 + Lx8 LINE L1 6952 7191 -282 3 1453 721 232 164 27 chr12 113786756 113787048 -7470482 + Lx8 LINE L1 7142 7473 0 3 1453 1734 11 0 0 chr12 113787376 113787564 -7469966 + B2_Mm1a SINE B2 2 189 -4 3 1453 1092 195 18 32 chr12 113787575 113787792 -7469738 + B3 SINE B2 1 214 -2 3 1453 226 154 0 0 chr12 113787838 113787877 -7469653 + B1_Mur4 SINE Alu 104 142 -8 3 1453 309 270 27 0 chr12 113787894 113787968 -7469562 + ID2 SINE ID 2 77 -6 3 1453 2639 84 25 98 chr12 113788052 113788500 -7469030 - RLTR9F LTR ERVK 0 415 1 3 1453 1067 128 59 17 chr12 113788623 113788852 -7468678 - Lx5 LINE L1 0 7058 6800 3 1453 285 290 107 56 chr12 113789041 113789275 -7468255 - L1ME2z LINE L1 -3 6441 6196 3 1453 228 280 0 0 chr12 113789298 113789348 -7468182 + C-rich Low_complexity Low_complexity 2 51 0 3 1453 447 209 71 26 chr12 113789351 113789464 -7468066 - B1_Mur1 SINE Alu -8 141 24 3 1453 238 173 22 0 chr12 113789495 113789554 -7467976 + MTEb LTR MaLR 52 111 -268 3 1453 312 347 16 16 chr12 113790005 113790131 -7467399 - Charlie2b DNA MER1_type -681 2101 1976 3 1453 252 236 100 61 chr12 113792160 113792327 -7465203 - L1M3 LINE L1 -645 5529 5346 3 1453 507 214 142 8 chr12 113792427 113792554 -7464976 - B1F SINE Alu -5 144 1 3 1453 907 270 0 27 chr12 113792574 113792795 -7464735 - B3 SINE B2 0 216 2 3 1453 539 293 25 6 chr12 113792825 113792983 -7464547 - RSINE1 SINE B4 -2 163 3 3 1453 246 305 0 58 chr12 113793167 113793254 -7464276 - RMER15 LTR ERVL -118 457 376 3 1453 905 252 180 11 chr12 113793259 113793620 -7463910 - Lx8 LINE L1 -235 7238 6817 3 1453 516 32 0 0 chr12 113794063 113794125 -7463405 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1453 351 77 0 19 chr12 113795179 113795232 -7462298 - MTC LTR MaLR -8 413 362 3 1453 2245 116 384 2 chr12 113795233 113795655 -7461875 - MT2B2 LTR ERVL 0 584 2 3 1453 1156 222 52 92 chr12 113795663 113795840 -7461690 + ORR1C1 LTR MaLR 3 148 -230 3 1453 4202 62 15 6 chr12 113795840 113796372 -7461158 - L1Md_F2 LINE L1 -1 6581 6045 3 1453 1156 222 52 92 chr12 113796372 113796576 -7460954 + ORR1C1 LTR MaLR 149 368 -10 3 1453 1763 183 28 17 chr12 113796585 113796946 -7460584 - MTC LTR MaLR -56 365 1 3 1453 267 270 154 39 chr12 113797012 113797116 -7460414 + PB1D10 SINE Alu 1 116 -1 3 1453 835 184 0 7 chr12 113797181 113797323 -7460207 + B1_Mur1 SINE Alu 4 144 -5 3 1453 1293 26 0 0 chr12 113799052 113799205 -7458325 + (GGAGA)n Simple_repeat Simple_repeat 3 155 0 3 1453 939 83 82 15 chr12 113799267 113799402 -7458128 + B1_Mus2 SINE Alu 4 147 0 3 1453 273 272 110 16 chr12 113799580 113799707 -7457823 + L1MC3 LINE L1 7406 7544 -241 3 1453 1213 62 0 0 chr12 113799858 113800004 -7457526 - B1_Mus2 SINE Alu 0 147 2 3 1453 1331 83 39 0 chr12 113800013 113800193 -7457337 - B2_Mm2 SINE B2 -8 187 1 3 1453 496 250 48 0 chr12 113800390 113800514 -7457016 + B1F SINE Alu 3 132 -17 3 1453 564 42 0 0 chr12 113801150 113801221 -7456309 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1453 520 279 31 119 chr12 113801243 113801704 -7455826 - BGLII_B LTR ERVK -27 414 1 3 1453 497 223 131 0 chr12 113801804 113801934 -7455596 - B1F2 SINE Alu -1 148 2 3 1453 189 0 0 0 chr12 113802048 113802069 -7455461 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 3 1453 805 59 0 41 chr12 113802069 113802192 -7455338 - B1_Mus2 SINE Alu 0 147 30 3 1453 1748 224 113 36 chr12 113802371 113802551 -7454979 + RLTR18 LTR ERVK 15 213 -403 3 1453 663 13 0 0 chr12 113802551 113802627 -7454903 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1453 1748 224 113 36 chr12 113802627 113803002 -7454528 + RLTR18 LTR ERVK 214 612 -4 3 1453 246 225 82 27 chr12 113803002 113803075 -7454455 - MIRm SINE MIR -112 164 88 3 1453 372 319 14 0 chr12 113803090 113803228 -7454302 - Charlie4 DNA MER1_type -48 1913 1774 3 1453 969 122 102 23 chr12 113804201 113804377 -7453153 - B2_Mm2 SINE B2 -5 190 1 3 1453 180 111 0 0 chr12 113804410 113804437 -7453093 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1453 597 110 0 0 chr12 113804448 113804539 -7452991 + (TG)n Simple_repeat Simple_repeat 1 91 0 3 1453 492 312 8 0 chr12 113804559 113804687 -7452843 - RSINE1 SINE B4 -21 144 16 3 1453 670 233 7 7 chr12 113804763 113804774 -7452756 - B1_Mur1 SINE Alu -2 147 138 3 1453 585 0 0 0 chr12 113804774 113804839 -7452691 + (GTTTG)n Simple_repeat Simple_repeat 1 65 0 3 1453 670 233 7 7 chr12 113804839 113804974 -7452556 - B1_Mur1 SINE Alu -12 137 2 3 1453 595 242 195 21 chr12 113804985 113805175 -7452355 - ID_B1 SINE B4 0 224 2 3 1453 579 153 192 8 chr12 113807393 113807518 -7450012 + B1_Mur1 SINE Alu 1 148 -1 3 1453 2478 120 59 15 chr12 113807543 113807933 -7449597 - MTB_Mm LTR MaLR 0 407 1 3 1453 311 347 86 11 chr12 113808058 113808233 -7449297 + L1M5 LINE L1 5424 5611 -562 3 1453 1201 133 37 0 chr12 113808862 113809050 -7448480 + B2_Mm2 SINE B2 1 195 0 3 1453 281 259 0 0 chr12 113809252 113809310 -7448220 + MTEa LTR MaLR 1 58 -321 3 1453 636 228 142 46 chr12 113809693 113809932 -7447598 + MTEa LTR MaLR 45 306 -73 3 1453 811 302 71 4 chr12 113810242 113810511 -7447019 + B4A SINE B4 2 288 -4 3 1453 599 204 18 0 chr12 113810621 113810734 -7446796 + B3A SINE B2 1 115 -83 3 1453 702 78 0 0 chr12 113810764 113810866 -7446664 + (CA)n Simple_repeat Simple_repeat 2 103 0 4 1453 1155 98 3 0 chr12 113810879 113811216 -7446314 + (CA)n Simple_repeat Simple_repeat 1 338 0 4 1453 1006 157 14 0 chr12 113811217 113811364 -7446166 - B1_Mur2 SINE Alu 0 149 1 4 1453 999 233 37 14 chr12 113811393 113811611 -7445919 + ID_B1 SINE B4 1 223 -1 4 1453 1461 84 16 0 chr12 113811615 113811806 -7445724 + B2_Mm2 SINE B2 1 194 -1 4 1453 730 243 53 0 chr12 113811857 113812026 -7445504 + B3A SINE B2 19 196 -2 4 1453 932 152 212 11 chr12 113812081 113812260 -7445270 + B3 SINE B2 1 215 -1 4 1453 279 0 0 0 chr12 113813010 113813041 -7444489 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 4 1453 945 135 0 33 chr12 113813051 113813204 -7444326 - B1_Mur2 SINE Alu -1 148 1 4 1453 1108 211 14 0 chr12 113813235 113813443 -7444087 + B3 SINE B2 6 216 0 4 1453 25 0 0 0 chr12 113813444 113813469 -7444061 + AT_rich Low_complexity Low_complexity 1 25 0 4 1453 281 138 25 5 chr12 113813532 113813598 -7443932 + B3 SINE B2 1 67 -126 4 1453 338 213 0 0 chr12 113813623 113813684 -7443846 + B1_Mur2 SINE Alu 57 117 -32 4 1453 412 128 13 13 chr12 113813685 113813764 -7443766 + GA-rich Low_complexity Low_complexity 2 80 0 4 1453 821 256 97 29 chr12 113813768 113814046 -7443484 - RMER5 LTR ERV1 -190 344 48 4 1453 295 272 0 4 chr12 113814087 113814166 -7443364 - B1F SINE Alu -18 99 24 4 1453 249 233 110 0 chr12 113815643 113815716 -7441814 + MIRc SINE MIR 120 200 -68 4 1453 341 93 37 0 chr12 113816230 113816284 -7441246 + HAL1-3A_ME LINE L1 1963 2018 -840 4 1453 210 71 0 0 chr12 113816284 113816312 -7441218 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1453 432 0 0 0 chr12 113816341 113816389 -7441141 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1453 582 293 20 0 chr12 113817678 113817828 -7439702 + RSINE1 SINE B4 1 153 -12 4 1453 359 333 38 71 chr12 113817914 113818098 -7439432 + B3A SINE B2 14 191 -7 4 1453 670 256 102 0 chr12 113819805 113819981 -7437549 - B3 SINE B2 -22 194 1 4 1453 299 324 0 38 chr12 113820320 113820506 -7437024 + (CAGCT)n Simple_repeat Simple_repeat 1 179 0 4 1453 1522 59 0 5 chr12 113821126 113821314 -7436216 + B2_Mm2 SINE B2 2 188 -7 4 1453 550 323 62 41 chr12 113822101 113822363 -7435167 + Lx9 LINE L1 7196 7454 -190 4 1453 1083 192 39 5 chr12 113822363 113822567 -7434963 + B3 SINE B2 1 211 -5 4 1453 550 323 62 41 chr12 113822567 113822621 -7434909 + Lx9 LINE L1 7455 7511 -133 4 1453 294 29 0 0 chr12 113822621 113822656 -7434874 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1453 550 323 62 41 chr12 113822656 113822774 -7434756 + Lx9 LINE L1 7512 7639 -5 4 1453 547 200 0 27 chr12 113822778 113822963 -7434567 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1453 236 264 69 0 chr12 113823369 113823441 -7434089 + MER82 DNA MER2_type 58 134 -519 4 1453 417 306 0 0 chr12 113823681 113823779 -7433751 + MER82 DNA MER2_type 541 638 -15 4 1453 630 161 23 14 chr12 113824913 113825261 -7432269 + (CAGAGA)n Simple_repeat Simple_repeat 1 350 0 4 1453 222 164 0 0 chr12 113825295 113825350 -7432180 + GA-rich Low_complexity Low_complexity 2 56 0 4 1453 200 284 31 10 chr12 113826896 113826992 -7430538 + (CCCCG)n Simple_repeat Simple_repeat 1 98 0 4 1453 234 0 0 0 chr12 113827940 113827966 -7429564 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1453 1864 174 49 49 chr12 113829745 113830151 -7427379 - MTD LTR MaLR 0 419 14 4 1453 915 132 104 49 chr12 113834237 113834420 -7423110 + B2_Mm2 SINE B2 2 194 -1 4 1453 485 196 207 35 chr12 113834438 113834554 -7422976 + B1_Mur1 SINE Alu 1 136 -13 4 1453 504 282 48 29 chr12 113834876 113835067 -7422463 + ID_B1 SINE B4 40 229 -63 4 1453 702 0 0 0 chr12 113835157 113835235 -7422295 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 1453 25 0 0 0 chr12 113837718 113837743 -7419787 + AT_rich Low_complexity Low_complexity 1 25 0 4 1453 1163 62 7 0 chr12 113837792 113837937 -7419593 - B1_Mus2 SINE Alu 0 147 2 4 1453 453 36 0 0 chr12 113839250 113839305 -7418225 + (GGCTG)n Simple_repeat Simple_repeat 2 56 0 4 1453 181 310 67 22 chr12 113840144 113840233 -7417297 + MIR SINE MIR 38 130 -78 4 1453 195 42 0 0 chr12 113840359 113840383 -7417147 + (TCCA)n Simple_repeat Simple_repeat 4 27 0 4 1453 246 105 0 0 chr12 113842581 113842619 -7414911 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 4 1453 258 32 0 0 chr12 113842641 113842672 -7414858 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 4 1453 305 325 6 25 chr12 113842705 113842866 -7414664 + C-rich Low_complexity Low_complexity 6 163 0 4 1453 948 133 0 0 chr12 113843775 113843955 -7413575 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1453 180 0 0 0 chr12 113846817 113846837 -7410693 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 4 1453 2022 125 51 10 chr12 113851464 113851778 -7405752 - ORR1A2 LTR MaLR 0 327 1 4 1453 1208 48 7 0 chr12 113852701 113852846 -7404684 + B1_Mus2 SINE Alu 1 146 -1 4 1453 3401 50 10 0 chr12 113854520 113854916 -7402614 - MTB LTR MaLR 0 400 1 4 1453 950 204 105 0 chr12 113855228 113855419 -7402111 + B3 SINE B2 3 213 -3 4 1453 322 296 189 0 chr12 113855873 113856005 -7401525 - RSINE1 SINE B4 -7 158 2 4 1453 189 122 219 0 chr12 113856406 113856447 -7401083 - MIRc SINE MIR -159 109 60 4 1453 21 0 0 0 chr12 113858221 113858242 -7399288 + GC_rich Low_complexity Low_complexity 1 21 0 4 1453 198 244 0 0 chr12 113860071 113860112 -7397418 - MIRm SINE MIR -130 146 106 4 1453 639 39 0 0 chr12 113863782 113863860 -7393670 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1453 1046 129 129 0 chr12 113865517 113865711 -7391819 + URR1A DNA MER1_type 8 226 0 4 1453 360 0 0 0 chr12 113865741 113865781 -7391749 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1453 423 0 0 0 chr12 113866130 113866177 -7391353 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1453 405 0 0 0 chr12 113866828 113866873 -7390657 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1453 1380 55 48 21 chr12 113868143 113868329 -7389201 - B2_Mm1a SINE B2 -1 192 2 4 1453 806 203 147 21 chr12 113868385 113868576 -7388954 + B3 SINE B2 2 216 0 4 1453 305 307 11 0 chr12 113868669 113868757 -7388773 - ID_B1 SINE B4 -3 221 133 4 1453 391 269 24 0 chr12 113868764 113868865 -7388665 - PB1D10 SINE Alu -38 111 4 4 1453 798 225 123 0 chr12 113869150 113869337 -7388193 - MTD LTR MaLR -2 417 208 4 1453 1149 76 0 0 chr12 113869345 113869502 -7388028 + (TCTA)n Simple_repeat Simple_repeat 4 160 0 4 1453 489 208 10 10 chr12 113869524 113869626 -7387904 - B1_Mur2 SINE Alu -46 103 2 4 1453 655 261 119 18 chr12 113869626 113869807 -7387723 - MTD LTR MaLR -212 207 5 4 1453 1218 138 61 14 chr12 113873329 113873542 -7383988 - URR1B DNA MER1_type 0 225 3 4 1453 447 19 0 0 chr12 113873993 113874045 -7383485 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1453 201 74 0 0 chr12 113874752 113874779 -7382751 + (TTAGGG)n Simple_repeat Simple_repeat 2 28 0 4 1453 336 102 0 0 chr12 113875921 113875970 -7381560 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1453 294 296 12 0 chr12 113876927 113877008 -7380522 - ID2 SINE ID 0 83 2 4 1453 1142 201 9 19 chr12 113878356 113878569 -7378961 + B3 SINE B2 1 211 -5 4 1453 1563 56 0 10 chr12 113878670 113878867 -7378663 - B2_Mm2 SINE B2 0 195 1 4 1453 606 279 93 19 chr12 113878901 113879106 -7378424 - B4 SINE B4 -3 289 70 4 1453 264 30 0 0 chr12 113879992 113880025 -7377505 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1453 1126 59 0 7 chr12 113880026 113880162 -7377368 - B1_Mus2 SINE Alu -12 135 1 4 1453 1681 26 0 15 chr12 113880233 113880428 -7377102 + B2_Mm1a SINE B2 2 193 0 4 1453 273 216 0 0 chr12 113881003 113881054 -7376476 - ORR1A3 LTR MaLR -4 322 272 4 1453 938 90 89 7 chr12 113881089 113881224 -7376306 - B1_Mus1 SINE Alu 0 148 3 4 1453 1939 99 0 0 chr12 113881230 113881512 -7376018 - ORR1A3 LTR MaLR -40 286 5 4 1453 207 0 0 0 chr12 113881817 113881840 -7375690 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 4 1453 552 316 139 21 chr12 113881883 113881955 -7375575 + MLT1B LTR MaLR 12 88 -302 4 1453 700 158 0 32 chr12 113881955 113882079 -7375451 - PB1D9 SINE Alu 0 120 1 4 1453 552 316 139 21 chr12 113882079 113882345 -7375185 + MLT1B LTR MaLR 89 390 0 4 1453 283 294 100 9 chr12 113883915 113884025 -7373505 + RSINE1 SINE B4 4 123 -42 4 1453 923 142 179 31 chr12 113885349 113885545 -7371985 + URR1B DNA MER1_type 1 225 0 4 1453 721 159 18 0 chr12 113888287 113888400 -7369130 - PB1D9 SINE Alu -5 115 1 4 1453 588 325 59 62 chr12 113889010 113889299 -7368231 - B4 SINE B4 -2 290 3 4 1453 1150 54 0 45 chr12 113889615 113889770 -7367760 + B1_Mus1 SINE Alu 1 148 0 4 1453 457 181 53 11 chr12 113889990 113890085 -7367445 + RMER15 LTR ERVL 39 137 -438 4 1453 959 237 126 19 chr12 113890090 113890361 -7367169 + RMER15 LTR ERVL 255 554 -21 4 1453 270 216 127 17 chr12 113890480 113890598 -7366932 - L1MB3 LINE L1 -133 6050 5920 4 1453 195 204 0 0 chr12 113890974 113891018 -7366512 + CT-rich Low_complexity Low_complexity 4 47 0 4 1453 1171 44 0 0 chr12 113891126 113891261 -7366269 + B1_Mus1 SINE Alu 2 136 -12 4 1453 180 0 0 0 chr12 113891262 113891282 -7366248 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1453 640 136 18 9 chr12 113893164 113893275 -7364255 + B3 SINE B2 1 112 -104 4 1453 659 135 76 45 chr12 113893704 113893836 -7363694 - B1_Mus1 SINE Alu -6 142 7 4 1453 214 86 57 0 chr12 113896015 113896050 -7361480 - B1F SINE Alu -18 131 95 4 1453 233 261 86 34 chr12 113897106 113897221 -7360309 - ID_B1 SINE B4 -169 123 2 4 1453 911 91 111 22 chr12 113897994 113898129 -7359401 + B1_Mur3 SINE Alu 2 148 -1 4 1453 735 221 82 62 chr12 113898146 113898354 -7359176 + B3 SINE B2 1 212 -4 4 1453 487 233 92 15 chr12 113898373 113898504 -7359026 - B1F2 SINE Alu 0 149 9 4 1453 643 202 32 0 chr12 113898521 113898645 -7358885 - B1F SINE Alu -21 128 1 4 1454 264 77 0 0 chr12 113902830 113902869 -7354661 + (G)n Simple_repeat Simple_repeat 1 39 0 5 1454 505 212 35 161 chr12 113905061 113905235 -7352295 + RSINE1 SINE B4 12 163 -2 5 1454 437 148 12 0 chr12 113905238 113905319 -7352211 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 1454 474 231 18 18 chr12 113905516 113905626 -7351904 + PB1D10 SINE Alu 2 111 -6 5 1454 180 0 0 0 chr12 113908037 113908057 -7349473 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 5 1454 212 0 36 0 chr12 113909280 113909308 -7348222 + (CCCTG)n Simple_repeat Simple_repeat 2 30 0 5 1454 180 0 0 0 chr12 113909633 113909653 -7347877 + (CCA)n Simple_repeat Simple_repeat 2 21 0 5 1454 269 263 26 0 chr12 113911785 113911861 -7345669 + Tigger16a DNA Tigger 781 858 -75 5 1454 30 77 0 0 chr12 113912240 113912305 -7345225 + GC_rich Low_complexity Low_complexity 1 65 0 5 1454 262 212 35 17 chr12 113912428 113912543 -7344987 + (CCG)n Simple_repeat Simple_repeat 2 118 0 5 1454 1426 65 43 0 chr12 113913990 113914174 -7343356 + B2_Mm1t SINE B2 1 192 -1 5 1454 225 313 50 10 chr12 113914832 113914932 -7342598 - L2a LINE L2 -259 3167 3064 5 1454 1327 140 9 22 chr12 113915054 113915280 -7342250 + URR1B DNA MER1_type 1 223 -2 5 1454 238 284 136 0 chr12 113915591 113915612 -7341918 - ID_B1 SINE B4 -3 221 122 5 1454 357 224 0 0 chr12 113915612 113915679 -7341851 - PB1D10 SINE Alu -10 107 41 5 1454 40 49 0 0 chr12 113917027 113917088 -7340442 + GC_rich Low_complexity Low_complexity 1 61 0 5 1454 225 220 12 35 chr12 113917232 113917317 -7340213 + (CGG)n Simple_repeat Simple_repeat 1 83 0 5 1454 315 340 19 45 chr12 113918332 113918486 -7339044 - LTR33C LTR ERVL -299 330 181 5 1454 261 0 0 0 chr12 113920431 113920460 -7337070 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1454 677 190 0 17 chr12 113922890 113923137 -7334393 + (CCA)n Simple_repeat Simple_repeat 1 242 0 5 1454 512 212 0 22 chr12 113923163 113923346 -7334184 + (CCA)n Simple_repeat Simple_repeat 1 179 0 5 1454 249 208 0 0 chr12 113923377 113923449 -7334081 + (CCA)n Simple_repeat Simple_repeat 3 74 0 5 1454 289 376 6 6 chr12 113923471 113923650 -7333880 + (CCA)n Simple_repeat Simple_repeat 2 180 0 5 1454 208 229 0 0 chr12 113923710 113923758 -7333772 + (CACCAT)n Simple_repeat Simple_repeat 6 53 0 5 1454 2397 130 98 7 chr12 113924301 113924728 -7332802 - RMER4A LTR ERVK 0 466 1 5 1454 248 240 155 136 chr12 113925233 113925320 -7332210 - MLT1B LTR MaLR -129 261 152 5 1454 1627 42 0 0 chr12 113925320 113925509 -7332021 + B2_Mm1a SINE B2 2 190 -3 5 1454 248 240 155 136 chr12 113925509 113925672 -7331858 - MLT1B LTR MaLR -239 151 6 5 1454 236 253 89 0 chr12 113927310 113927389 -7330141 - RLTR25B LTR ERVK -508 520 435 5 1454 488 229 5 0 chr12 113927323 113927422 -7330108 - PB1D10 SINE Alu -45 104 2 5 1454 340 337 37 16 chr12 113927422 113927612 -7329918 + L1M5 LINE L1 5575 5768 -676 5 1454 338 330 109 11 chr12 113928095 113928279 -7329251 - MLT1A LTR MaLR -165 209 8 5 1454 835 212 52 33 chr12 113928566 113928776 -7328754 + B3 SINE B2 3 216 0 5 1454 1492 199 92 15 chr12 113929150 113929487 -7328043 - MTD LTR MaLR -8 411 49 5 1454 829 131 14 35 chr12 113929496 113929638 -7327892 + B1_Mus1 SINE Alu 10 148 0 5 1454 265 246 0 16 chr12 113929642 113929704 -7327826 - MTD LTR MaLR -360 61 1 5 1454 404 324 232 42 chr12 113929734 113929803 -7327727 - L1MC4a LINE L1 -1963 5919 5847 5 1454 630 280 99 40 chr12 113929803 113930075 -7327455 - B4 SINE B4 -2 290 3 5 1454 404 324 232 42 chr12 113930075 113930552 -7326978 - L1MC4a LINE L1 -2036 5846 5270 5 1454 207 333 13 0 chr12 113932585 113932663 -7324867 + (TGGG)n Simple_repeat Simple_repeat 3 81 0 5 1454 468 0 0 0 chr12 113932791 113932843 -7324687 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1454 524 290 147 28 chr12 113932927 113933179 -7324351 + RMER15 LTR ERVL 256 537 -38 5 1454 2817 151 36 43 chr12 113933180 113933742 -7323788 + RLTR20B2 LTR ERVK 3 560 0 5 1454 437 223 201 102 chr12 113934013 113934324 -7323206 - MTEa LTR MaLR -37 342 1 5 1454 189 0 0 0 chr12 113934751 113934772 -7322758 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 5 1454 1033 31 0 0 chr12 113934772 113934900 -7322630 - B1_Mm SINE Alu -12 135 8 5 1454 525 246 39 90 chr12 113934900 113934928 -7322602 - B4 SINE B4 -78 214 67 5 1454 345 254 201 36 chr12 113934905 113935044 -7322486 + B3A SINE B2 37 198 0 5 1454 596 260 50 11 chr12 113935087 113935294 -7322236 - MLT2B2 LTR ERVL -17 550 335 5 1454 2863 44 10 15 chr12 113936104 113936498 -7321032 - MTB LTR MaLR -8 392 1 5 1454 360 298 88 4 chr12 113937134 113937375 -7320155 - MLT1C LTR MaLR -150 317 30 5 1454 459 0 0 0 chr12 113937376 113937427 -7320103 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1454 411 329 27 8 chr12 113938778 113939029 -7318501 - ERVL-E-int LTR ERVL -2100 3567 3325 5 1454 180 77 0 0 chr12 113939659 113939685 -7317845 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 5 1454 327 203 43 0 chr12 113939795 113939864 -7317666 + PB1D7 SINE Alu 17 88 -32 5 1454 449 302 69 6 chr12 113940080 113940240 -7317290 - MLT1C LTR MaLR -2 465 296 5 1454 736 249 185 79 chr12 113940645 113940948 -7316582 - MTD LTR MaLR 0 419 81 5 1454 2301 147 136 64 chr12 113940948 113941494 -7316036 + RMER4B LTR ERVK 1 585 0 5 1454 870 314 99 118 chr12 113941667 113942029 -7315501 + RMER13A LTR ERVK 1 326 -534 5 1454 1302 27 0 0 chr12 113942029 113942176 -7315354 - B1_Mus2 SINE Alu 0 147 1 5 1454 870 314 99 118 chr12 113942176 113942593 -7314937 + RMER13A LTR ERVK 327 765 -95 5 1454 367 284 26 8 chr12 113942786 113942903 -7314627 - MTEb LTR MaLR -5 374 256 5 1454 1205 158 0 39 chr12 113943014 113943244 -7314286 + URR1A DNA MER1_type 6 226 0 5 1454 1527 53 16 5 chr12 113943715 113943904 -7313626 + B2_Mm2 SINE B2 2 192 -3 5 1454 241 297 14 0 chr12 113944039 113944113 -7313417 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 5 1454 238 333 0 54 chr12 113944135 113944227 -7313303 - LTR31 LTR ERV1 -18 601 515 5 1454 715 221 124 21 chr12 113944309 113944503 -7313027 + B3 SINE B2 3 216 0 5 1454 1268 203 114 81 chr12 113946296 113946415 -7311115 - ORR1D1 LTR MaLR -3 371 252 5 1454 276 30 0 0 chr12 113946415 113946448 -7311082 + (CAGG)n Simple_repeat Simple_repeat 4 36 0 5 1454 1268 203 114 81 chr12 113946448 113946687 -7310843 - ORR1D1 LTR MaLR -123 251 3 5 1454 419 155 0 12 chr12 113946710 113946795 -7310735 + CT-rich Low_complexity Low_complexity 2 85 0 5 1454 1412 44 0 6 chr12 113946795 113946976 -7310554 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1454 889 153 0 0 chr12 113946976 113947107 -7310423 - B1_Mus1 SINE Alu -15 133 3 5 1454 742 29 0 47 chr12 113947149 113947256 -7310274 - B1_Mus2 SINE Alu 0 147 46 5 1454 258 361 0 0 chr12 113947318 113947390 -7310140 + PB1 SINE Alu 19 90 -37 5 1454 699 258 100 19 chr12 113947414 113947683 -7309847 + B4A SINE B4 1 291 -1 5 1454 273 226 4 0 chr12 113947737 113947792 -7309738 + B1F2 SINE Alu 1 57 -63 5 1454 534 243 18 18 chr12 113947793 113947906 -7309624 + PB1D9 SINE Alu 5 117 -3 5 1454 874 229 67 5 chr12 113947976 113948169 -7309361 + B3 SINE B2 3 207 -9 5 1454 238 324 0 39 chr12 113949725 113949802 -7307728 + MLT1A1 LTR MaLR 320 393 -15 5 1454 254 238 45 15 chr12 113949920 113950052 -7307478 + ORR1B1-int LTR MaLR 619 754 -755 5 1454 1036 50 0 21 chr12 113949953 113950079 -7307451 + B1_Mus2 SINE Alu 9 134 -13 5 1454 429 20 0 0 chr12 113950079 113950129 -7307401 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 1454 1036 50 0 21 chr12 113950129 113950144 -7307386 + B1_Mus2 SINE Alu 135 147 0 5 1454 355 212 25 0 chr12 113950752 113950832 -7306698 - RMER12 LTR ERVK -471 851 770 5 1454 236 204 37 112 chr12 113951140 113951328 -7306202 + (AGGTG)n Simple_repeat Simple_repeat 5 178 0 5 1454 282 262 40 17 chr12 113951542 113951717 -7305813 + (TGAG)n Simple_repeat Simple_repeat 2 180 0 5 1454 450 0 0 0 chr12 113953166 113953216 -7304314 + (TATG)n Simple_repeat Simple_repeat 4 53 0 5 1454 268 219 326 0 chr12 113953225 113953329 -7304201 - B3A SINE B2 -59 139 2 5 1454 222 37 0 0 chr12 113953862 113953889 -7303641 + (TCC)n Simple_repeat Simple_repeat 2 28 0 5 1454 313 320 65 43 chr12 113953926 113954112 -7303418 + MTEa LTR MaLR 20 209 -170 5 1454 552 323 128 101 chr12 113954202 113954302 -7303228 + MTE-int LTR MaLR 10 107 -1473 5 1454 1068 284 162 28 chr12 113954302 113954772 -7302758 + MT2A LTR ERVL 1 533 0 5 1454 552 323 128 101 chr12 113954772 113954971 -7302559 + MTE-int LTR MaLR 108 316 -1264 5 1454 1302 106 26 31 chr12 113954971 113955166 -7302364 - B2_Mm2 SINE B2 -1 194 1 5 1454 552 323 128 101 chr12 113955166 113955427 -7302103 + MTE-int LTR MaLR 317 586 -994 5 1454 762 242 143 0 chr12 113955436 113955618 -7301912 + B3 SINE B2 2 209 -7 5 1454 738 286 37 90 chr12 113955660 113955766 -7301764 + B4 SINE B4 9 109 -183 5 1454 858 219 0 0 chr12 113955766 113955912 -7301618 - B1_Mur1 SINE Alu -2 147 2 5 1454 738 286 37 90 chr12 113955912 113956105 -7301425 + B4 SINE B4 110 292 0 5 1454 587 336 82 25 chr12 113956142 113956423 -7301107 + MTEa LTR MaLR 63 359 -20 5 1454 1164 93 52 62 chr12 113956424 113956587 -7300943 + B2_Mm1t SINE B2 1 171 -22 5 1454 1138 76 0 14 chr12 113956587 113956733 -7300797 + B1_Mus2 SINE Alu 3 146 -1 5 1454 1164 93 52 62 chr12 113956733 113956763 -7300767 + B2_Mm1t SINE B2 172 192 -1 5 1454 431 333 126 4 chr12 113956779 113957056 -7300474 - L1MB4 LINE L1 -180 6000 5690 5 1454 495 45 0 0 chr12 113957713 113957779 -7299751 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1454 275 230 66 23 chr12 113957779 113957865 -7299665 - L1MB4 LINE L1 -501 5682 5592 5 1454 388 260 121 51 chr12 113957895 113958065 -7299465 - L1MB4 LINE L1 -651 5532 5339 5 1454 1512 172 231 3 chr12 113958065 113958386 -7299144 + ORR1B1 LTR MaLR 1 394 0 5 1454 388 260 121 51 chr12 113958386 113958430 -7299100 - L1MB4 LINE L1 -845 5338 5303 5 1454 203 161 0 18 chr12 113960328 113960385 -7297145 + (CGGGG)n Simple_repeat Simple_repeat 4 59 0 5 1454 240 207 61 26 chr12 113960472 113960586 -7296944 + (CCGGG)n Simple_repeat Simple_repeat 2 119 0 5 1454 211 262 0 56 chr12 113960979 113961068 -7296462 + CT-rich Low_complexity Low_complexity 4 87 0 5 1454 210 71 0 0 chr12 113962190 113962218 -7295312 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1454 238 289 115 0 chr12 113962394 113962498 -7295032 + MER45A DNA Tip100 63 178 0 5 1454 225 293 61 0 chr12 113963813 113963895 -7293635 + MLT1A0 LTR MaLR 9 95 -313 5 1454 1563 219 112 0 chr12 113963925 113964290 -7293240 - MTD LTR MaLR -13 406 1 6 1454 256 361 0 0 chr12 113964290 113964372 -7293158 + MLT1A0 LTR MaLR 134 215 -150 5 1454 1176 68 14 0 chr12 113966370 113966516 -7291014 - B1_Mus1 SINE Alu 0 148 1 6 1454 183 343 55 45 chr12 113973154 113973264 -7284266 - MIRc SINE MIR -75 193 83 6 1454 272 274 65 109 chr12 113979267 113979468 -7278062 + MT2B LTR ERVL 63 254 -347 6 1454 867 93 0 37 chr12 113979378 113979512 -7278018 + B1_Mur4 SINE Alu 14 142 -8 6 1454 189 107 0 0 chr12 113979615 113979643 -7277887 + (TGGA)n Simple_repeat Simple_repeat 1 28 0 6 1454 501 17 0 0 chr12 113984369 113984427 -7273103 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1454 374 264 94 0 chr12 113984896 113985002 -7272528 + PB1D9 SINE Alu 5 120 0 6 1454 830 242 63 0 chr12 113985079 113985269 -7272261 - B3 SINE B2 -14 202 1 6 1454 285 315 11 11 chr12 113985955 113986048 -7271482 + RLTR15 LTR ERVK 1 93 -266 6 1454 255 271 108 44 chr12 113986093 113986251 -7271279 + RLTR12B LTR ERVK 301 468 -60 6 1454 198 0 0 0 chr12 113986445 113986467 -7271063 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1454 269 177 12 6 chr12 113986467 113986537 -7270993 + B2_Mm2 SINE B2 103 148 -47 6 1454 1257 96 28 0 chr12 113986566 113986744 -7270786 + B2_Mm2 SINE B2 2 184 -11 6 1454 1587 47 0 16 chr12 113987666 113987860 -7269670 + B2_Mm1a SINE B2 2 192 -1 6 1454 905 310 7 42 chr12 113988556 113988866 -7268664 + MYSERV6-int LTR ERVK 3990 4288 -4671 6 1454 1974 277 72 85 chr12 113989794 113990836 -7266694 + MYSERV-int LTR ERVK 4059 5086 -1464 6 1454 552 270 48 27 chr12 113990843 113991052 -7266478 + RMER4A LTR ERVK 236 557 -28 6 1454 335 252 14 64 chr12 113991052 113991097 -7266433 + MYSERV-int LTR ERVK 5306 5344 -1206 6 1454 1646 42 0 0 chr12 113991097 113991288 -7266242 - B2_Mm1a SINE B2 -1 192 2 6 1454 335 252 14 64 chr12 113991288 113991382 -7266148 + MYSERV-int LTR ERVK 5345 5438 -1112 6 1454 692 125 0 0 chr12 113991386 113991490 -7266040 + B2_Mm2 SINE B2 4 107 -88 6 1454 4779 177 50 45 chr12 113991562 113992622 -7264908 + MYSERV6-int LTR ERVK 7895 8959 0 6 1454 769 277 29 60 chr12 113992622 113992971 -7264559 + RLTR15 LTR ERVK 1 338 -21 6 1454 556 265 11 61 chr12 113993266 113993447 -7264083 - RLTR11B LTR ERVK -25 428 257 6 1454 805 260 22 86 chr12 113993505 113993859 -7263671 - RLTR11A2 LTR ERVK -124 317 1 6 1454 329 341 94 58 chr12 113994502 113994560 -7262970 + L1MEc LINE L1 1172 1228 -5280 6 1454 911 181 7 0 chr12 113994560 113994709 -7262821 + B1_Mur4 SINE Alu 1 150 0 6 1454 470 271 58 53 chr12 113994709 113994927 -7262603 + L1MEc LINE L1 1229 1457 -5051 6 1454 360 323 24 49 chr12 113995127 113995332 -7262198 - ORR1E LTR MaLR -106 253 54 6 1454 592 243 64 7 chr12 113995470 113995611 -7261919 + B1_Mur1 SINE Alu 1 149 0 6 1454 313 198 0 23 chr12 113995612 113995700 -7261830 + GA-rich Low_complexity Low_complexity 2 87 0 6 1454 489 310 134 52 chr12 113995706 113996012 -7261518 + MTE-int LTR MaLR 596 926 -654 6 1454 2508 73 24 3 chr12 113996535 113996918 -7260612 + MusHAL1 LINE L1 1695 2085 -627 6 1454 363 109 356 0 chr12 113997500 113997601 -7259929 + RLTR14 LTR ERV1 246 382 0 6 1454 328 264 166 71 chr12 113998006 113998201 -7259329 + MLT1J LTR MaLR 57 310 -202 6 1454 540 292 43 113 chr12 113998289 113998590 -7258940 - ORR1E LTR MaLR -1 358 79 6 1454 1387 84 5 25 chr12 114000913 114000925 -7256605 - B2_Mm2 SINE B2 -3 192 182 1 1454 976 141 0 11 chr12 114000925 114001104 -7256426 + CT-rich Low_complexity Low_complexity 2 178 0 2 1454 1387 84 5 25 chr12 114001104 114001287 -7256243 - B2_Mm2 SINE B2 -14 181 1 1 1454 1138 236 21 12 chr12 114003597 114003826 -7253704 + B4 SINE B4 1 231 -61 3 1454 739 169 190 11 chr12 114003826 114004005 -7253525 + B3 SINE B2 1 211 -5 4 1454 333 269 0 25 chr12 114004018 114004098 -7253432 + B4 SINE B4 215 292 0 3 1454 1250 41 7 0 chr12 114004197 114004343 -7253187 - B1_Mus2 SINE Alu 0 147 1 5 1454 573 15 0 0 chr12 114004434 114004500 -7253030 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1454 252 0 0 0 chr12 114004562 114004590 -7252940 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1454 1092 101 0 0 chr12 114004590 114004728 -7252802 - B1_Mus1 SINE Alu -10 138 1 8 1454 665 291 71 162 chr12 114007286 114007594 -7249936 - B4A SINE B4 -12 280 1 9 1454 317 342 131 31 chr12 114009115 114009504 -7248026 + MLT1F2 LTR MaLR 37 464 -96 1 1454 294 143 0 0 chr12 114025638 114025687 -7231843 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1454 279 0 0 0 chr12 114025747 114025778 -7231752 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1454 270 0 0 0 chr12 114025845 114025875 -7231655 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1454 405 0 0 0 chr12 114025875 114025919 -7231611 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1454 195 42 0 0 chr12 114026259 114026283 -7231247 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1 1454 244 296 93 50 chr12 114026576 114026878 -7230652 + L1M4b LINE L1 1279 1593 -5741 1 1454 735 201 14 20 chr12 114026882 114027029 -7230501 + ID_B1 SINE B4 2 147 -77 1 1454 259 267 47 0 chr12 114026964 114027050 -7230480 + AluG_3 SINE Alu 137 226 -85 1 1454 361 287 131 7 chr12 114027214 114027351 -7230179 + RSINE1 SINE B4 12 165 0 1 1454 405 229 4 0 chr12 114027355 114027640 -7229890 + (CA)n Simple_repeat Simple_repeat 1 286 0 1 1454 407 229 0 11 chr12 114027691 114027872 -7229658 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1454 382 220 11 0 chr12 114027895 114028072 -7229458 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1454 21 36 0 0 chr12 114028072 114028100 -7229430 + AT_rich Low_complexity Low_complexity 1 28 0 2 1454 328 300 45 9 chr12 114028100 114028211 -7229319 + PB1D10 SINE Alu 1 115 -2 2 1454 644 261 14 0 chr12 114028227 114028369 -7229161 + B1_Mur1 SINE Alu 5 148 -1 2 1454 315 0 0 0 chr12 114028369 114028404 -7229126 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 2 1454 678 109 0 0 chr12 114028404 114028505 -7229025 + (GGGA)n Simple_repeat Simple_repeat 4 104 0 2 1454 396 188 396 0 chr12 114028510 114028606 -7228924 + B1_Mus1 SINE Alu 3 136 -12 2 1454 603 0 0 0 chr12 114028606 114028673 -7228857 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 2 1454 239 313 30 0 chr12 114028680 114028814 -7228716 + L1M4b LINE L1 2328 2465 -4561 1 1454 834 39 0 0 chr12 114028831 114028933 -7228597 + (GA)n Simple_repeat Simple_repeat 2 103 0 2 1454 283 222 0 0 chr12 114028937 114028991 -7228539 + B4 SINE B4 18 71 -221 2 1454 251 369 25 0 chr12 114029362 114029519 -7228011 + L1M5 LINE L1 5422 5582 -658 2 1454 1334 130 16 0 chr12 114029642 114029834 -7227696 - B2_Mm2 SINE B2 0 195 1 3 1454 745 135 9 0 chr12 114029837 114029948 -7227582 - PB1D9 SINE Alu -7 113 2 3 1454 247 226 0 0 chr12 114030022 114030075 -7227455 + MER58A DNA MER1_type 28 80 -144 3 1454 183 314 45 54 chr12 114030306 114030417 -7227113 + MIRb SINE MIR 26 135 -133 3 1455 377 297 20 68 chr12 114032901 114033049 -7224481 + B1F SINE Alu 9 149 0 3 1455 210 37 0 0 chr12 114034072 114034099 -7223431 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1455 621 224 120 0 chr12 114034371 114034496 -7223034 + B1_Mur2 SINE Alu 2 141 -8 3 1455 450 0 0 0 chr12 114034496 114034546 -7222984 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1455 34 0 0 0 chr12 114036842 114036876 -7220654 + AT_rich Low_complexity Low_complexity 1 34 0 3 1455 744 181 7 48 chr12 114037708 114037853 -7219677 + B1_Mus1 SINE Alu 3 141 -7 3 1455 255 229 0 0 chr12 114037854 114037972 -7219558 + GA-rich Low_complexity Low_complexity 2 119 0 4 1455 252 0 0 0 chr12 114039846 114039874 -7217656 + (CACCC)n Simple_repeat Simple_repeat 3 30 0 4 1455 396 0 0 0 chr12 114041077 114041121 -7216409 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1455 435 38 0 0 chr12 114042219 114042272 -7215258 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1455 642 233 23 0 chr12 114045511 114045644 -7211886 - B1F SINE Alu -13 136 1 4 1455 291 221 78 0 chr12 114045677 114045754 -7211776 - MLT1D LTR MaLR -417 88 6 4 1455 21 57 0 0 chr12 114047189 114047224 -7210306 + GC_rich Low_complexity Low_complexity 1 35 0 4 1455 963 114 43 0 chr12 114048173 114048313 -7209217 + B1_Mus2 SINE Alu 1 146 -1 4 1455 253 324 66 9 chr12 114048606 114048712 -7208818 + Tigger9b DNA MER2_type 117 228 -396 4 1455 260 231 0 0 chr12 114050887 114050939 -7206591 - MLT1A1 LTR MaLR -275 133 82 4 1455 540 323 100 37 chr12 114052138 114052488 -7205042 - MLT1A LTR MaLR -1 373 2 5 1455 522 283 65 9 chr12 114055073 114055287 -7202243 + L1MA8 LINE L1 5547 5772 -528 5 1455 1237 48 0 0 chr12 114055345 114055490 -7202040 + B1_Mm SINE Alu 2 146 -1 5 1455 584 211 89 0 chr12 114055630 114055753 -7201777 + B1_Mur3 SINE Alu 1 134 -15 5 1455 2191 77 29 0 chr12 114055756 114056067 -7201463 + ORR1A2 LTR MaLR 1 320 -7 5 1455 253 297 120 19 chr12 114056095 114056253 -7201277 + L1MA8 LINE L1 6106 6279 -12 5 1455 396 65 65 0 chr12 114056849 114056911 -7200619 - B1_Mus2 SINE Alu -3 144 79 5 1455 226 314 83 28 chr12 114057468 114057540 -7199990 - PB1D7 SINE Alu -18 102 27 5 1455 432 157 9 113 chr12 114057811 114057825 -7199705 + MT2B LTR ERVL 155 156 -445 5 1455 736 57 9 0 chr12 114057825 114057930 -7199600 + B1_Mus2 SINE Alu 1 106 -41 5 1455 258 179 164 0 chr12 114058033 114058100 -7199430 + RSINE1 SINE B4 57 134 -31 5 1455 382 255 18 18 chr12 114060526 114060638 -7196892 - PB1D10 SINE Alu -3 114 3 6 1455 262 243 26 26 chr12 114060673 114060749 -7196781 - B4A SINE B4 -216 76 1 6 1455 352 284 39 0 chr12 114060900 114061002 -7196528 + L1MD LINE L1 5642 5747 -495 6 1455 838 224 48 136 chr12 114061433 114061785 -7195745 - ORR1E LTR MaLR 0 359 39 6 1455 804 197 62 29 chr12 114061796 114062005 -7195525 - B3 SINE B2 0 216 1 6 1455 226 190 0 23 chr12 114062043 114062086 -7195444 - MurSatRep1 Unknown Unknown -1867 270 229 6 1455 668 269 60 4 chr12 114062154 114062389 -7195141 + Lx8 LINE L1 6867 7114 -359 6 1455 298 343 69 28 chr12 114062444 114062588 -7194942 + Lx8 LINE L1 7211 7360 -113 6 1455 3409 153 55 14 chr12 114062726 114063363 -7194167 - RMER6D LTR ERVK -57 663 1 6 1455 292 152 75 15 chr12 114063688 114063755 -7193775 + 4.5SRNA scRNA scRNA 16 86 -8 6 1455 915 26 0 0 chr12 114063697 114063813 -7193717 + B1_Mus1 SINE Alu 33 148 0 6 1455 36 0 0 0 chr12 114063813 114063849 -7193681 + AT_rich Low_complexity Low_complexity 1 36 0 7 1455 550 208 99 8 chr12 114064143 114064274 -7193256 + B1_Mur1 SINE Alu 7 149 0 7 1455 566 140 84 0 chr12 114064652 114064759 -7192771 + B1_Mur4 SINE Alu 15 130 -20 7 1455 271 155 0 12 chr12 114065232 114065285 -7192245 - B1_Mus1 SINE Alu -54 63 14 7 1455 326 311 93 0 chr12 114065386 114065537 -7191993 + B3 SINE B2 47 211 -5 7 1455 382 255 82 0 chr12 114066290 114066388 -7191142 + ID_B1 SINE B4 117 222 -2 7 1455 23 0 0 0 chr12 114067738 114067761 -7189769 + GC_rich Low_complexity Low_complexity 1 23 0 7 1455 349 262 36 0 chr12 114068544 114068628 -7188902 - B3A SINE B2 -95 103 17 7 1455 234 0 0 0 chr12 114069205 114069231 -7188299 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1455 3467 108 59 49 chr12 114069409 114069868 -7187662 - MT2B LTR ERVL 0 601 131 7 1455 2286 71 52 0 chr12 114069868 114070177 -7187353 + ORR1A2 LTR MaLR 1 325 -2 8 1455 3467 108 59 49 chr12 114070177 114070312 -7187218 - MT2B LTR ERVL -471 130 1 7 1455 2218 124 65 3 chr12 114070685 114071056 -7186474 + ORR1B1 LTR MaLR 1 394 0 8 1455 636 150 41 16 chr12 114071123 114071245 -7186285 + B1_Mur1 SINE Alu 23 147 -2 8 1455 520 199 366 13 chr12 114071264 114071417 -7186113 + B3 SINE B2 1 207 -9 8 1455 699 187 0 29 chr12 114071485 114071623 -7185907 - B1_Mur1 SINE Alu -2 147 14 8 1455 437 225 174 18 chr12 114071627 114071802 -7185728 - B3 SINE B2 -1 194 1 8 1455 329 174 14 0 chr12 114072235 114072304 -7185226 + GA-rich Low_complexity Low_complexity 2 71 0 8 1455 810 159 94 6 chr12 114072315 114072486 -7185044 - RMER6A LTR ERVK -156 600 415 8 1455 231 200 0 39 chr12 114072568 114072620 -7184910 - MT2A LTR ERVL -403 130 81 8 1455 1012 103 115 0 chr12 114072626 114072791 -7184739 + B2_Mm1t SINE B2 3 186 -7 8 1455 1510 176 9 54 chr12 114072792 114073123 -7184407 - RLTR19-int LTR ERVK -2342 3795 3480 9 1455 1724 232 98 94 chr12 114073259 114074124 -7183406 - RLTR19-int LTR ERVK -2944 3193 2077 9 1455 1318 150 9 5 chr12 114074308 114074529 -7183001 + URR1B DNA MER1_type 1 222 -3 9 1455 1009 207 180 168 chr12 114074532 114075043 -7182487 - MT2A LTR ERVL -16 517 1 9 1455 263 185 37 0 chr12 114075043 114075097 -7182433 - MERVL_2A-int LTR ERVL 0 5761 5706 9 1455 245 277 47 35 chr12 114075098 114075184 -7182346 - ORR1A3-int LTR MaLR -1325 638 552 9 1455 627 168 8 31 chr12 114075184 114075297 -7182233 - MERVL_2A-int LTR ERVL -144 5617 5505 9 1455 3941 23 38 0 chr12 114075297 114075772 -7181758 + MT2_Mm LTR ERVL 1 493 0 9 1455 627 159 0 12 chr12 114075772 114075864 -7181666 - MERVL_2A-int LTR ERVL -257 5504 5373 9 1455 2000 99 12 43 chr12 114075864 114076191 -7181339 + MT2B LTR ERVL 1 317 -284 9 1455 351 141 16 0 chr12 114076151 114076215 -7181315 - ORR1A2 LTR MaLR -258 69 5 9 1455 991 136 17 17 chr12 114076227 114076406 -7181124 - MERVL_2A-int LTR ERVL -3359 2402 2224 9 1455 273 136 0 0 chr12 114076400 114076444 -7181086 - MERVL_2A-int LTR ERVL -3494 2267 2224 9 1455 273 136 0 0 chr12 114076438 114076482 -7181048 - MERVL_2A-int LTR ERVL -3494 2267 2224 9 1455 253 159 0 0 chr12 114076476 114076520 -7181010 - MERVL_2A-int LTR ERVL -3494 2267 2224 9 1455 273 136 0 0 chr12 114076514 114076558 -7180972 - MERVL_2A-int LTR ERVL -3494 2267 2224 9 1455 2974 162 32 4 chr12 114076590 114077116 -7180414 - MERVL_2A-int LTR ERVL -3494 2267 1727 9 1455 2899 168 45 21 chr12 114077117 114077688 -7179842 + ORR1B1-int LTR MaLR 11 595 -914 9 1455 372 191 17 9 chr12 114077688 114077781 -7179749 - ORR1C2 LTR MaLR 0 384 238 9 1455 287 96 77 0 chr12 114077756 114077808 -7179722 + ORR1B1-int LTR MaLR 546 601 -908 9 1455 1915 151 116 0 chr12 114077809 114078153 -7179377 - ORR1C2 LTR MaLR 0 384 1 9 1455 768 148 42 0 chr12 114078252 114078394 -7179136 + B1_Mus1 SINE Alu 1 148 0 1 1455 305 149 15 0 chr12 114078401 114078468 -7179062 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1455 662 132 14 14 chr12 114079382 114079520 -7178010 + C-rich Low_complexity Low_complexity 4 141 0 1 1455 743 135 15 31 chr12 114079520 114079650 -7177880 - B1_Mur3 SINE Alu -9 140 13 1 1455 827 158 38 0 chr12 114079650 114079808 -7177722 + B2_Mm2 SINE B2 2 165 -30 1 1455 1053 0 0 0 chr12 114079813 114079930 -7177600 + (GA)n Simple_repeat Simple_repeat 1 117 0 1 1455 245 132 0 0 chr12 114080409 114080447 -7177083 + B2_Mm2 SINE B2 1 38 -157 1 1455 290 244 48 70 chr12 114080693 114080863 -7176667 + RLTR13D3 LTR ERVK 944 1072 -42 1 1455 1025 90 108 0 chr12 114080891 114081058 -7176472 + B2_Mm2 SINE B2 6 190 -5 1 1455 436 72 29 0 chr12 114081715 114081784 -7175746 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1455 237 300 0 81 chr12 114081936 114081947 -7175583 + ID_B1 SINE B4 71 150 -74 1 1455 269 292 0 53 chr12 114081947 114082023 -7175507 + PB1D7 SINE Alu 1 72 -48 1 1455 22 56 0 0 chr12 114082033 114082069 -7175461 + AT_rich Low_complexity Low_complexity 1 36 0 1 1455 1068 174 39 15 chr12 114082256 114082460 -7175070 - MTD LTR MaLR -8 411 203 1 1455 990 69 0 0 chr12 114082460 114082604 -7174926 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 1 1455 456 253 182 0 chr12 114082608 114082778 -7174752 - Lx6 LINE L1 -16 7444 7244 1 1455 981 216 5 24 chr12 114082782 114082995 -7174535 - MTD LTR MaLR -210 209 1 1 1455 444 228 57 153 chr12 114082996 114083224 -7174306 - MTD-int LTR MaLR -9 1249 1044 1 1455 244 131 49 0 chr12 114083229 114083290 -7174240 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1455 535 152 131 0 chr12 114083350 114083449 -7174081 + PB1D9 SINE Alu 1 112 -8 1 1455 248 154 19 0 chr12 114083449 114083501 -7174029 + (ATG)n Simple_repeat Simple_repeat 1 53 0 1 1455 294 164 0 0 chr12 114083505 114083560 -7173970 + GA-rich Low_complexity Low_complexity 2 56 0 1 1455 1584 231 150 63 chr12 114083560 114084356 -7173174 - MTD-int LTR MaLR -205 893 1 1 1455 1595 212 17 107 chr12 114084356 114084706 -7172824 - MTD LTR MaLR 0 419 80 1 1455 983 95 14 0 chr12 114084706 114084854 -7172676 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 1 1455 1595 212 17 107 chr12 114084854 114084882 -7172648 - MTD LTR MaLR -340 79 79 1 1455 1155 35 7 0 chr12 114084882 114085027 -7172503 - B1_Mus1 SINE Alu -1 147 2 1 1455 1595 212 17 107 chr12 114085027 114085107 -7172423 - MTD LTR MaLR -340 79 1 1 1455 558 139 220 9 chr12 114085212 114085321 -7172209 + B1_Mus1 SINE Alu 10 141 -7 1 1455 549 0 0 0 chr12 114085323 114085384 -7172146 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 1455 678 230 75 65 chr12 114085384 114085565 -7171965 + MTD LTR MaLR 201 388 -31 1 1455 432 0 0 0 chr12 114085570 114085618 -7171912 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1 1455 1151 65 0 7 chr12 114085618 114085767 -7171763 - B2_Mm2 SINE B2 -34 161 13 1 1455 345 314 7 21 chr12 114085910 114086053 -7171477 + GA-rich Low_complexity Low_complexity 3 143 0 1 1455 250 223 10 21 chr12 114086062 114086158 -7171372 + (TGAG)n Simple_repeat Simple_repeat 2 96 0 1 1455 4789 38 3 2 chr12 114086692 114087278 -7170252 - LTRIS_Mus LTR ERV1 0 587 1 1 1455 994 63 180 12 chr12 114087279 114087440 -7170090 - B2_Mm2 SINE B2 -6 189 2 1 1455 423 0 0 0 chr12 114087654 114087701 -7169829 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1455 683 259 47 141 chr12 114088484 114088579 -7168951 + B4A SINE B4 1 83 -209 1 1455 639 184 6 58 chr12 114088579 114088735 -7168795 + B1_Mur3 SINE Alu 2 149 0 1 1455 683 259 47 141 chr12 114088735 114088936 -7168594 + B4A SINE B4 84 269 -23 1 1455 423 0 0 0 chr12 114088964 114089011 -7168519 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1455 258 32 0 0 chr12 114089031 114089062 -7168468 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1 1455 391 324 14 35 chr12 114089078 114089219 -7168311 + ID_B1 SINE B4 84 221 -3 1 1455 322 269 46 35 chr12 114091557 114091803 -7165727 + (CATA)n Simple_repeat Simple_repeat 1 248 0 1 1455 216 0 0 0 chr12 114092343 114092367 -7165163 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1455 1070 90 0 0 chr12 114092373 114092518 -7165012 - B1_Mus2 SINE Alu -2 145 1 1 1455 990 138 0 0 chr12 114092692 114092920 -7164610 + (CA)n Simple_repeat Simple_repeat 1 228 0 1 1455 310 303 94 52 chr12 114092987 114093345 -7164185 - L1MB3 LINE L1 -296 5887 5522 1 1455 324 70 0 0 chr12 114094157 114094200 -7163330 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1455 247 149 43 0 chr12 114094216 114094263 -7163267 + (CCCA)n Simple_repeat Simple_repeat 2 50 0 1 1455 539 191 6 0 chr12 114094263 114094420 -7163110 + (CATA)n Simple_repeat Simple_repeat 1 158 0 1 1455 1009 111 0 16 chr12 114094420 114094603 -7162927 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 1455 222 62 0 0 chr12 114094608 114094640 -7162890 + (CAGC)n Simple_repeat Simple_repeat 4 35 0 1 1455 715 304 14 35 chr12 114097581 114097865 -7159665 + B4A SINE B4 1 279 -13 1 1455 504 0 0 0 chr12 114097865 114097921 -7159609 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1455 377 342 139 15 chr12 114097936 114098138 -7159392 + HAL1-3A_ME LINE L1 1975 2201 -657 1 1455 181 0 33 33 chr12 114098146 114098176 -7159354 + (GGAGA)n Simple_repeat Simple_repeat 3 32 0 1 1455 267 103 128 55 chr12 114099665 114099829 -7157701 + (CAGTA)n Simple_repeat Simple_repeat 4 179 0 1 1455 261 0 0 0 chr12 114100812 114100841 -7156689 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 1 1455 1027 125 11 6 chr12 114100841 114101018 -7156512 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1455 320 23 0 43 chr12 114101025 114101039 -7156491 + (TTTTC)n Simple_repeat Simple_repeat 5 18 0 1 1455 1213 79 11 6 chr12 114101039 114101218 -7156312 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1455 320 23 0 43 chr12 114101218 114101249 -7156281 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 1 1455 1221 78 0 0 chr12 114101249 114101415 -7156115 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 1 1455 1195 28 0 0 chr12 114101417 114101558 -7155972 - B1_Mus2 SINE Alu -6 141 1 1 1455 364 280 57 13 chr12 114101661 114101820 -7155710 - L1MB3 LINE L1 -214 5969 5804 1 1455 1766 158 60 12 chr12 114101911 114102261 -7155269 - MTC LTR MaLR 0 421 8 1 1455 307 112 406 0 chr12 114102333 114102439 -7155091 - B2_Mm2 SINE B2 0 195 47 1 1455 1059 121 6 6 chr12 114102480 114102646 -7154884 - B2_Mm1t SINE B2 -26 167 2 1 1455 648 208 8 0 chr12 114102685 114102805 -7154725 - B3 SINE B2 -95 121 1 1 1455 300 102 0 0 chr12 114103520 114103569 -7153961 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 1 1455 396 0 0 0 chr12 114105325 114105369 -7152161 + (CTG)n Simple_repeat Simple_repeat 1 44 0 1 1455 2166 40 0 7 chr12 114105804 114106078 -7151452 + L1Md_F2 LINE L1 6311 6582 0 1 1455 663 272 33 5 chr12 114106094 114106308 -7151222 + RCHARR1 DNA MER1_type 439 658 -316 1 1455 504 86 0 0 chr12 114107344 114107414 -7150116 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1455 486 250 0 0 chr12 114107415 114107523 -7150007 - RSINE1 SINE B4 -23 142 35 1 1455 614 164 0 8 chr12 114107685 114107808 -7149722 + CT-rich Low_complexity Low_complexity 4 125 0 1 1455 465 275 70 1 chr12 114108151 114108348 -7149182 - L1M LINE L1 -708 5471 5262 1 1455 210 98 24 24 chr12 114108626 114108668 -7148862 + (CACCC)n Simple_repeat Simple_repeat 5 46 0 1 1455 201 133 0 0 chr12 114109645 114109675 -7147855 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 1 1455 594 223 188 59 chr12 114109685 114109871 -7147659 - B3 SINE B2 -6 210 1 1 1455 380 284 8 17 chr12 114109873 114109991 -7147539 - PB1D10 SINE Alu 0 117 1 1 1455 696 208 0 40 chr12 114110838 114110988 -7146542 - B1_Mur2 SINE Alu -5 144 1 1 1455 199 371 95 0 chr12 114112713 114112818 -7144712 - MIR SINE MIR -34 228 114 1 1455 181 282 84 0 chr12 114114053 114114124 -7143406 - MIR SINE MIR -78 184 108 1 1455 326 339 62 19 chr12 114117265 114117408 -7140122 - B1F SINE Alu -7 143 1 1 1455 324 48 0 0 chr12 114117455 114117497 -7140033 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1455 1560 67 0 15 chr12 114117545 114117741 -7139789 - B2_Mm1t SINE B2 0 193 1 1 1455 185 237 0 0 chr12 114119135 114119173 -7138357 - MIRc SINE MIR -147 121 84 1 1455 510 17 0 0 chr12 114119290 114119349 -7138181 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1455 722 271 35 0 chr12 114120516 114120686 -7136844 - B3A SINE B2 -18 180 5 1 1455 1329 76 27 21 chr12 114120698 114120886 -7136644 - B2_Mm2 SINE B2 -6 189 1 1 1455 292 122 0 0 chr12 114120886 114120926 -7136604 - B2_Mm2 SINE B2 -154 41 2 1 1455 372 164 0 0 chr12 114120931 114120998 -7136532 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1455 842 134 47 47 chr12 114121004 114121153 -7136377 - B1_Mur4 SINE Alu 0 150 2 1 1455 783 182 7 26 chr12 114121423 114121575 -7135955 + B1_Mur2 SINE Alu 1 149 0 1 1455 368 302 73 118 chr12 114121653 114121678 -7135852 - L1M2 LINE L1 -2555 3591 3568 1 1455 836 235 10 58 chr12 114121678 114121859 -7135671 + B3A SINE B2 1 178 -20 1 1455 408 88 0 0 chr12 114121859 114121916 -7135614 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1455 836 235 10 58 chr12 114121916 114121942 -7135588 + B3A SINE B2 179 198 0 1 1455 396 303 72 116 chr12 114121942 114122349 -7135181 - L1M2 LINE L1 -2579 3567 3158 1 1455 2531 61 6 0 chr12 114122401 114122745 -7134785 + MTB LTR MaLR 2 347 -53 1 1455 443 235 41 16 chr12 114122748 114122869 -7134661 + MTE2a LTR MaLR 66 189 -190 1 1455 180 0 0 0 chr12 114122885 114122905 -7134625 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1455 254 342 14 0 chr12 114122921 114122994 -7134536 + MTE2a LTR MaLR 256 329 -50 1 1455 433 160 40 0 chr12 114123557 114123682 -7133848 + GA-rich Low_complexity Low_complexity 2 131 0 1 1455 365 328 53 32 chr12 114123742 114123931 -7133599 - ERVL-E-int LTR ERVL -4773 894 702 1 1455 2193 156 26 44 chr12 114125066 114125494 -7132036 + RMER15 LTR ERVL 1 420 -155 1 1455 1982 119 148 64 chr12 114125498 114125936 -7131594 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1455 355 57 0 0 chr12 114125938 114125991 -7131539 + IAPEz-int LTR ERVK 3 55 -1932 2 1455 1362 157 54 71 chr12 114125974 114126494 -7131036 + IAPEz-int LTR ERVK 10 429 -6052 2 1455 3284 51 0 19 chr12 114126494 114126955 -7130575 + IAPEz-int LTR ERVK 211 662 -5819 2 1455 1966 86 0 0 chr12 114126955 114127233 -7130297 + IAPEz-int LTR ERVK 1359 1636 -4845 2 1455 5489 48 4 19 chr12 114127232 114127989 -7129541 + IAPEz-int LTR ERVK 5736 6481 0 2 1455 1964 122 148 64 chr12 114127989 114128427 -7129103 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1455 700 170 61 0 chr12 114128427 114128574 -7128956 + RMER15 LTR ERVL 420 575 0 1 1455 472 218 67 98 chr12 114129168 114129277 -7128253 + L1M4 LINE L1 4602 4699 -1447 2 1455 1206 248 34 31 chr12 114129277 114129568 -7127962 + B4A SINE B4 1 292 0 2 1455 472 218 67 98 chr12 114129568 114129743 -7127787 + L1M4 LINE L1 4700 4877 -1269 2 1455 701 241 93 0 chr12 114129780 114129942 -7127588 + B3A SINE B2 1 177 -21 2 1455 219 69 0 0 chr12 114129942 114129971 -7127559 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1455 252 0 0 0 chr12 114129971 114129999 -7127531 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1455 1441 85 16 0 chr12 114130107 114130296 -7127234 - B2_Mm2 SINE B2 -2 193 2 2 1455 646 214 8 0 chr12 114130296 114130413 -7127117 + B1_Mur1 SINE Alu 11 128 -21 2 1455 357 374 52 9 chr12 114130447 114130790 -7126740 + L1M4 LINE L1 5406 5763 -415 2 1455 2365 91 11 20 chr12 114130880 114131227 -7126303 + Lx2 LINE L1 6653 6996 -1 2 1455 225 232 54 0 chr12 114131330 114131386 -7126144 + MTE-int LTR MaLR 278 336 -1244 2 1455 204 125 0 0 chr12 114131753 114131785 -7125745 + (GGA)n Simple_repeat Simple_repeat 3 34 0 2 1455 983 157 0 6 chr12 114131788 114131968 -7125562 + GA-rich Low_complexity Low_complexity 1 179 0 2 1455 412 343 68 30 chr12 114133804 114134204 -7123326 + L1MCa LINE L1 723 1137 -5371 2 1455 303 233 41 0 chr12 114134213 114134303 -7123227 + PB1D10 SINE Alu 1 96 -21 2 1455 1620 61 0 3 chr12 114134346 114134707 -7122823 + (GGGAA)n Simple_repeat Simple_repeat 1 359 0 2 1455 388 260 8 119 chr12 114134709 114134827 -7122703 + RSINE1 SINE B4 59 163 -2 2 1455 510 96 0 0 chr12 114134852 114134925 -7122605 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1455 1248 91 6 28 chr12 114134952 114134969 -7122561 - B2_Mm2 SINE B2 -19 176 160 2 1455 317 82 20 0 chr12 114134969 114135018 -7122512 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1455 1248 91 6 28 chr12 114135018 114135180 -7122350 - B2_Mm2 SINE B2 -36 159 1 2 1455 399 303 74 67 chr12 114135180 114135463 -7122067 + L1MC1 LINE L1 5738 6022 -322 2 1455 352 216 57 0 chr12 114135528 114135616 -7121914 + L1MC2 LINE L1 6244 6336 -8 2 1455 367 369 54 9 chr12 114135593 114135910 -7121620 + L1MD2 LINE L1 5568 5898 -461 2 1455 242 311 89 84 chr12 114135983 114136208 -7121322 - ORR1E LTR MaLR -45 314 89 2 1455 987 211 58 10 chr12 114136951 114137157 -7120373 + B3 SINE B2 1 216 0 2 1455 353 296 51 45 chr12 114137193 114137370 -7120160 + L1MCa LINE L1 4786 4963 -1358 2 1455 848 140 59 0 chr12 114137546 114137682 -7119848 + B1_Mus1 SINE Alu 1 144 -4 2 1455 594 0 0 0 chr12 114137682 114137748 -7119782 + (TAAAA)n Simple_repeat Simple_repeat 3 68 0 2 1455 427 226 150 24 chr12 114137749 114137876 -7119654 + RSINE1 SINE B4 2 144 -21 2 1455 1058 201 47 38 chr12 114137941 114138153 -7119377 + B3 SINE B2 3 216 0 2 1455 279 0 0 0 chr12 114138193 114138224 -7119306 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1455 976 81 0 13 chr12 114138228 114138378 -7119152 + (GGGAGA)n Simple_repeat Simple_repeat 3 150 0 2 1455 486 0 0 0 chr12 114138647 114138701 -7118829 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1455 595 187 0 9 chr12 114138903 114139011 -7118519 - B1F SINE Alu -42 107 1 2 1455 503 227 87 43 chr12 114139299 114139335 -7118195 - MTC LTR MaLR -5 416 383 2 1455 1213 49 0 0 chr12 114139335 114139473 -7118057 + B1_Mus2 SINE Alu 1 138 -9 2 1455 387 0 0 0 chr12 114139473 114139516 -7118014 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1455 503 233 293 16 chr12 114139521 114139769 -7117761 - MTC LTR MaLR -39 382 28 2 1455 596 290 169 12 chr12 114139880 114140135 -7117395 - MER44A DNA MER2_type -7 332 38 2 1455 839 167 0 8 chr12 114140226 114140359 -7117171 + B1_Mur1 SINE Alu 2 133 -16 2 1455 195 42 0 0 chr12 114140359 114140383 -7117147 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 2 1455 645 199 39 96 chr12 114141176 114141294 -7116236 - B1_Mur1 SINE Alu -1 148 32 2 1455 1150 29 0 42 chr12 114141294 114141436 -7116094 + B1_Mus2 SINE Alu 1 136 -11 2 1455 198 0 0 0 chr12 114141436 114141458 -7116072 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1455 645 199 39 96 chr12 114141458 114141494 -7116036 - B1_Mur1 SINE Alu -118 31 3 2 1455 816 158 3 0 chr12 114143981 114144284 -7113246 + (CA)n Simple_repeat Simple_repeat 1 304 0 2 1455 302 352 41 47 chr12 114144460 114144630 -7112900 - B4 SINE B4 -8 284 116 2 1455 1126 69 14 7 chr12 114145481 114145627 -7111903 + B1_Mus1 SINE Alu 2 148 0 2 1455 231 36 0 0 chr12 114146807 114146835 -7110695 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1455 204 97 0 0 chr12 114154005 114154036 -7103494 + (CAG)n Simple_repeat Simple_repeat 1 31 0 2 1455 450 169 0 0 chr12 114157889 114157978 -7099552 + (CA)n Simple_repeat Simple_repeat 1 89 0 2 1455 1210 112 78 0 chr12 114161408 114161587 -7095943 - B2_Mm2 SINE B2 -1 194 2 2 1455 581 164 9 0 chr12 114162040 114162156 -7095374 + GA-rich Low_complexity Low_complexity 2 118 0 2 1456 21 0 0 0 chr12 114163897 114163918 -7093612 + GC_rich Low_complexity Low_complexity 1 21 0 2 1456 49 60 0 0 chr12 114166938 114167022 -7090508 + GC_rich Low_complexity Low_complexity 1 84 0 2 1456 24 77 0 0 chr12 114167573 114167625 -7089905 + GC_rich Low_complexity Low_complexity 1 52 0 2 1456 180 0 0 0 chr12 114167720 114167740 -7089790 + (CCG)n Simple_repeat Simple_repeat 2 21 0 2 1456 202 214 20 39 chr12 114167794 114167896 -7089634 + (CGG)n Simple_repeat Simple_repeat 1 100 0 2 1456 222 37 0 0 chr12 114167936 114167963 -7089567 + (CGG)n Simple_repeat Simple_repeat 1 27 0 2 1456 25 0 0 0 chr12 114168159 114168184 -7089346 + GC_rich Low_complexity Low_complexity 1 25 0 2 1456 936 178 0 0 chr12 114170373 114170553 -7086977 + CT-rich Low_complexity Low_complexity 1 180 0 2 1456 199 302 10 59 chr12 114171098 114171200 -7086330 - MIR SINE MIR -87 121 25 2 1456 560 341 112 52 chr12 114173622 114174088 -7083442 + MLT1E1A LTR MaLR 143 634 -20 2 1456 725 126 23 0 chr12 114174817 114174992 -7082538 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1456 556 188 17 0 chr12 114175005 114175367 -7082163 + (CA)n Simple_repeat Simple_repeat 1 368 0 2 1456 324 127 0 52 chr12 114175383 114175441 -7082089 + HAL1-3A_ME LINE L1 1976 2030 -828 2 1456 835 132 8 8 chr12 114175441 114175688 -7081842 + (CA)n Simple_repeat Simple_repeat 1 247 0 2 1456 201 250 0 0 chr12 114179671 114179715 -7077815 - L2a LINE L2 -9 3417 3374 2 1456 26 50 0 0 chr12 114180128 114180168 -7077362 + GC_rich Low_complexity Low_complexity 1 40 0 2 1456 30 27 0 0 chr12 114180359 114180396 -7077134 + GC_rich Low_complexity Low_complexity 1 37 0 2 1456 438 20 0 0 chr12 114180951 114181002 -7076528 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1456 239 336 151 5 chr12 114181812 114182024 -7075506 - MLT1D LTR MaLR -185 320 78 2 1456 212 214 0 0 chr12 114182923 114182965 -7074565 - B1F SINE Alu -101 48 7 2 1456 293 277 32 110 chr12 114182973 114183127 -7074403 + RSINE1 SINE B4 24 165 0 2 1456 520 244 37 30 chr12 114183201 114183336 -7074194 - B4A SINE B4 -156 136 1 2 1456 320 246 55 0 chr12 114183599 114183709 -7073821 + L1M4 LINE L1 4919 5034 -1112 2 1456 356 283 121 1 chr12 114183940 114184155 -7073375 + L1MB3 LINE L1 5878 6130 -41 2 1456 760 191 15 0 chr12 114184156 114184292 -7073238 + B1_Mur3 SINE Alu 3 140 -9 2 1456 243 263 0 95 chr12 114184457 114184541 -7072989 - PB1D7 SINE Alu -27 93 18 2 1456 216 0 0 0 chr12 114186553 114186577 -7070953 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 2 1456 270 0 0 0 chr12 114189792 114189822 -7067708 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1456 1230 235 154 15 chr12 114191663 114192000 -7065530 + MTD LTR MaLR 18 401 -18 2 1456 980 229 44 5 chr12 114192000 114192206 -7065324 + B3 SINE B2 3 216 0 2 1456 845 181 20 14 chr12 114192441 114192587 -7064943 - B1_Mur4 SINE Alu -1 149 3 2 1456 1032 198 44 62 chr12 114193743 114193969 -7063561 - URR1B DNA MER1_type -3 222 1 2 1456 396 0 0 0 chr12 114196769 114196813 -7060717 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1456 1339 96 32 0 chr12 114198920 114199108 -7058422 + B2_Mm2 SINE B2 2 195 0 2 1456 684 208 211 11 chr12 114202910 114203090 -7054440 - B3 SINE B2 0 216 1 2 1456 641 315 133 80 chr12 114203439 114203820 -7053710 + MTD LTR MaLR 13 379 0 2 1456 415 305 164 57 chr12 114204338 114204637 -7052893 + L1MD LINE L1 4882 5212 -934 2 1456 332 255 149 0 chr12 114208684 114208778 -7048752 - RSINE1 SINE B4 -16 149 42 2 1456 385 287 17 25 chr12 114208902 114209020 -7048510 - ID_B1 SINE B4 -16 208 92 2 1456 189 0 0 0 chr12 114209020 114209041 -7048489 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1456 1227 54 0 0 chr12 114209041 114209188 -7048342 - B1_Mus2 SINE Alu 0 147 1 2 1456 27 0 0 0 chr12 114209196 114209223 -7048307 + AT_rich Low_complexity Low_complexity 1 27 0 2 1456 359 286 30 92 chr12 114209229 114209360 -7048170 + RSINE1 SINE B4 10 132 -33 2 1456 220 125 0 24 chr12 114209396 114209419 -7048111 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1456 870 185 208 0 chr12 114209419 114209597 -7047933 + B3 SINE B2 2 216 0 2 1456 220 125 0 24 chr12 114209597 114209614 -7047916 + (CAAAAA)n Simple_repeat Simple_repeat 1 17 0 2 1456 726 213 7 0 chr12 114209624 114209760 -7047770 + B1_Mur3 SINE Alu 7 143 -6 2 1456 396 319 92 28 chr12 114209788 114209930 -7047600 + RSINE1 SINE B4 15 165 0 2 1456 251 267 11 55 chr12 114212703 114212794 -7044736 + PB1 SINE Alu 41 127 0 2 1456 923 162 0 7 chr12 114213117 114213266 -7044264 + B1_Mur2 SINE Alu 1 148 -1 2 1456 308 274 65 9 chr12 114213446 114213553 -7043977 + L1M2 LINE L1 5115 5227 -916 2 1456 324 291 127 19 chr12 114213565 114213843 -7043687 + L1M2 LINE L1 5285 5602 -710 2 1456 327 90 385 0 chr12 114213864 114213942 -7043588 + B1_Mur4 SINE Alu 35 142 -8 2 1456 588 246 174 17 chr12 114213972 114214150 -7043380 + B3 SINE B2 10 215 -1 3 1456 338 267 10 19 chr12 114214157 114214260 -7043270 + L1M2 LINE L1 5607 5708 -481 2 1456 21 71 0 0 chr12 114215197 114215239 -7042291 + GC_rich Low_complexity Low_complexity 1 42 0 3 1456 437 182 121 0 chr12 114218050 114218149 -7039381 - PB1D9 SINE Alu -4 116 6 3 1456 941 209 73 19 chr12 114219411 114219616 -7037914 + B3 SINE B2 1 216 0 3 1456 333 179 112 31 chr12 114220745 114220843 -7036687 + PB1D9 SINE Alu 12 117 -3 3 1456 180 0 0 0 chr12 114222517 114222537 -7034993 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1456 823 93 17 0 chr12 114222971 114223089 -7034441 - PB1D9 SINE Alu 0 120 1 3 1456 861 127 114 0 chr12 114223094 114223252 -7034278 - B2_Mm2 SINE B2 -18 177 2 3 1456 724 247 21 43 chr12 114223289 114223475 -7034055 + B3A SINE B2 2 183 -15 3 1456 506 178 30 0 chr12 114223479 114223580 -7033950 - B1_Mur2 SINE Alu -5 144 41 3 1456 507 213 90 56 chr12 114223581 114223614 -7033916 + B4 SINE B4 53 198 -91 3 1456 797 37 0 9 chr12 114223614 114223722 -7033808 + B1_Mm SINE Alu 1 107 -40 3 1456 772 290 41 21 chr12 114224590 114224818 -7032712 + B4A SINE B4 1 233 -59 3 1456 593 228 9 0 chr12 114224818 114224932 -7032598 + RSINE1 SINE B4 2 116 -49 3 1456 252 0 0 0 chr12 114224932 114224960 -7032570 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1456 1034 93 0 0 chr12 114224960 114225099 -7032431 - B1_Mus1 SINE Alu -8 140 2 3 1456 1701 168 100 0 chr12 114225683 114226004 -7031526 + ORR1B2 LTR MaLR 15 367 0 3 1456 354 320 23 60 chr12 114226388 114226471 -7031059 + B1F SINE Alu 1 85 -64 3 1456 556 220 114 0 chr12 114226471 114226603 -7030927 + B1_Mur2 SINE Alu 2 148 -1 3 1456 354 320 23 60 chr12 114226603 114226652 -7030878 + B1F SINE Alu 86 128 -21 3 1456 448 212 0 22 chr12 114226668 114226802 -7030728 + B3 SINE B2 1 213 -3 3 1456 243 122 0 0 chr12 114227808 114227857 -7029673 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1456 1574 42 0 0 chr12 114228305 114228498 -7029032 + B2_Mm1a SINE B2 1 193 0 3 1456 1000 82 13 27 chr12 114228517 114228667 -7028863 + B1_Mus1 SINE Alu 1 148 0 3 1456 222 118 0 0 chr12 114228667 114228701 -7028829 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1456 285 289 60 17 chr12 114228731 114228847 -7028683 + L1M5 LINE L1 4552 4672 -1474 3 1456 226 262 158 8 chr12 114228836 114228963 -7028567 + L1M4 LINE L1 4485 4630 -1516 3 1456 406 172 69 29 chr12 114228997 114229099 -7028431 + PB1D10 SINE Alu 5 110 -7 3 1456 240 141 30 30 chr12 114229104 114229170 -7028360 + GA-rich Low_complexity Low_complexity 4 69 0 3 1456 396 312 204 65 chr12 114229184 114229232 -7028298 + L1M4 LINE L1 4662 4709 -1437 3 1456 1353 99 0 0 chr12 114229232 114229424 -7028106 + B2_Mm2 SINE B2 3 194 -1 3 1456 396 312 204 65 chr12 114229424 114229728 -7027802 + L1M4 LINE L1 4710 5063 -1083 3 1456 663 285 33 25 chr12 114229787 114230028 -7027502 - B4A SINE B4 -18 274 32 3 1456 475 228 193 23 chr12 114230117 114230288 -7027242 + B3 SINE B2 1 200 -16 3 1456 357 88 3 0 chr12 114230297 114230358 -7027172 - B1_Mus2 SINE Alu 0 147 59 3 1456 416 286 82 8 chr12 114230492 114230626 -7026904 + RSINE1 SINE B4 12 155 -10 3 1456 446 274 41 77 chr12 114230638 114230808 -7026722 + B4 SINE B4 60 223 -69 3 1456 757 169 14 21 chr12 114230668 114230813 -7026717 + B1_Mur3 SINE Alu 6 149 0 3 1456 23 33 0 0 chr12 114231704 114231734 -7025796 + AT_rich Low_complexity Low_complexity 1 30 0 3 1456 1213 41 0 0 chr12 114231872 114232018 -7025512 - B1_Mus2 SINE Alu 0 147 2 3 1456 273 313 95 9 chr12 114232027 114232143 -7025387 + B3 SINE B2 38 163 -53 3 1456 227 245 38 113 chr12 114232139 114232245 -7025285 + B3A SINE B2 100 197 -1 3 1456 1124 106 0 23 chr12 114232769 114232943 -7024587 + B2_Mm2 SINE B2 2 171 -24 3 1456 297 303 192 0 chr12 114232965 114233064 -7024466 - PB1D9 SINE Alu -1 119 2 3 1456 602 296 7 7 chr12 114233468 114233621 -7023909 + RSINE1 SINE B4 11 163 -2 3 1456 1459 140 79 66 chr12 114233766 114234135 -7023395 + LTRIS5 LTR ERV1 74 512 0 3 1456 628 109 20 10 chr12 114236185 114236287 -7021243 + PB1D9 SINE Alu 1 103 -17 3 1456 400 259 0 11 chr12 114236315 114236405 -7021125 + PB1D10 SINE Alu 9 97 -20 3 1456 647 267 105 51 chr12 114236626 114236902 -7020628 + B4A SINE B4 2 292 0 3 1456 221 0 35 0 chr12 114236914 114236943 -7020587 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1456 468 198 18 36 chr12 114236957 114237067 -7020463 + PB1D10 SINE Alu 5 112 -5 3 1456 391 321 22 7 chr12 114237076 114237214 -7020316 + B1F SINE Alu 1 140 -9 3 1456 235 262 14 58 chr12 114237228 114237297 -7020233 + ID4 SINE ID 4 69 -14 3 1456 232 348 21 48 chr12 114237453 114237640 -7019890 + L1MD LINE L1 4814 4995 -1151 3 1456 231 36 0 0 chr12 114238917 114238945 -7018585 + (CGGGG)n Simple_repeat Simple_repeat 1 28 0 3 1456 595 185 0 70 chr12 114239784 114239912 -7017618 + PB1D9 SINE Alu 1 119 -1 3 1456 333 302 61 97 chr12 114239952 114240117 -7017413 + RSINE1 SINE B4 3 161 -4 3 1456 549 262 124 101 chr12 114240957 114241023 -7016507 - MLT1B LTR MaLR -2 388 332 3 1456 779 130 113 36 chr12 114241023 114241191 -7016339 + B2_Mm2 SINE B2 1 181 -14 3 1456 549 262 124 101 chr12 114241191 114241203 -7016327 - MLT1B LTR MaLR -59 331 331 3 1456 1112 68 0 0 chr12 114241203 114241350 -7016180 - B1_Mus1 SINE Alu 0 148 2 3 1456 549 262 124 101 chr12 114241350 114241576 -7015954 - MLT1B LTR MaLR -59 331 76 3 1456 271 0 51 0 chr12 114242049 114242088 -7015442 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 1456 216 339 198 0 chr12 114242403 114242524 -7015006 + ID_B1 SINE B4 73 217 -7 3 1456 269 269 12 25 chr12 114242819 114242899 -7014631 - PB1D10 SINE Alu -36 81 3 3 1456 807 151 7 14 chr12 114242953 114243094 -7014436 + B1_Mur4 SINE Alu 11 150 0 3 1456 749 221 0 0 chr12 114243803 114243943 -7013587 - B1_Mur1 SINE Alu 0 149 10 3 1456 228 89 42 62 chr12 114244265 114244313 -7013217 - B1_Mur1 SINE Alu -1 148 102 3 1456 393 319 77 106 chr12 114244560 114244900 -7012630 + MT2A LTR ERVL 67 396 -137 3 1456 207 0 0 0 chr12 114244929 114244952 -7012578 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1456 1185 41 7 0 chr12 114244955 114245101 -7012429 - B1_Mus2 SINE Alu 0 147 1 3 1456 258 136 0 0 chr12 114245143 114245187 -7012343 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1456 439 280 195 16 chr12 114245582 114245767 -7011763 + MLT1A0 LTR MaLR 117 334 -31 3 1456 1351 83 10 0 chr12 114245768 114245960 -7011570 - B2_Mm2 SINE B2 -1 194 1 3 1456 726 155 6 124 chr12 114245994 114246163 -7011367 + B1_Mur4 SINE Alu 2 150 0 3 1456 849 249 10 0 chr12 114246228 114246433 -7011097 - B3 SINE B2 -9 207 1 3 1456 330 240 10 77 chr12 114246906 114247010 -7010520 + ID_B1 SINE B4 80 176 -48 3 1456 755 168 41 14 chr12 114247421 114247566 -7009964 - B1_Mur4 SINE Alu -1 149 1 3 1456 633 47 0 1 chr12 114248325 114248419 -7009111 + B1_Mur4 SINE Alu 56 149 -1 3 1456 1242 102 43 0 chr12 114248445 114248631 -7008899 + B2_Mm2 SINE B2 1 194 -1 3 1456 1055 50 50 0 chr12 114248635 114248775 -7008755 + B1_Mus2 SINE Alu 1 147 0 3 1456 213 298 85 39 chr12 114248779 114248908 -7008622 + B4 SINE B4 72 206 -86 3 1456 394 233 39 3 chr12 114248804 114248922 -7008608 + B1_Mur1 SINE Alu 10 129 -20 3 1456 412 205 163 98 chr12 114249118 114249302 -7008228 - B3A SINE B2 0 198 3 3 1456 1250 120 16 0 chr12 114249448 114249640 -7007890 - B2_Mm2 SINE B2 0 195 1 3 1456 22 56 0 0 chr12 114252584 114252620 -7004910 + GC_rich Low_complexity Low_complexity 1 36 0 3 1456 245 198 41 20 chr12 114252630 114252728 -7004802 + (CCCG)n Simple_repeat Simple_repeat 4 103 0 3 1456 24 103 0 0 chr12 114252728 114252815 -7004715 + GC_rich Low_complexity Low_complexity 1 87 0 3 1456 22 56 0 0 chr12 114252933 114252969 -7004561 + GC_rich Low_complexity Low_complexity 1 36 0 3 1456 580 218 28 7 chr12 114254259 114254402 -7003128 - B1F2 SINE Alu 0 149 4 3 1456 239 244 268 0 chr12 114255446 114255569 -7001961 - L1M5 LINE L1 -767 5473 5318 3 1456 491 172 99 20 chr12 114256850 114256951 -7000579 - PB1 SINE Alu -18 109 1 3 1456 360 0 0 0 chr12 114257212 114257252 -7000278 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1456 540 142 0 191 chr12 114257551 114257745 -6999785 - B1_Mur4 SINE Alu 0 150 14 3 1456 487 227 62 15 chr12 114257870 114258000 -6999530 + RSINE1 SINE B4 8 143 -22 3 1456 619 74 213 0 chr12 114258057 114258165 -6999365 + B1_Mus1 SINE Alu 9 139 -9 3 1456 252 0 0 0 chr12 114258165 114258193 -6999337 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1456 297 183 0 0 chr12 114258247 114258307 -6999223 + (TATG)n Simple_repeat Simple_repeat 4 63 0 3 1456 400 274 59 0 chr12 114258681 114258783 -6998747 - PB1D10 SINE Alu -7 110 3 3 1456 364 244 190 15 chr12 114258819 114258956 -6998574 - L1MEg LINE L1 -2697 3449 3289 3 1456 801 142 15 0 chr12 114258960 114259094 -6998436 - B1_Mur3 SINE Alu -2 147 12 3 1456 725 139 163 6 chr12 114259095 114259261 -6998269 + B2_Mm2 SINE B2 3 194 -1 3 1456 266 250 16 0 chr12 114259454 114259518 -6998012 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 3 1456 788 335 159 37 chr12 114259551 114260251 -6997279 - L1MEg LINE L1 -3112 3034 2250 3 1456 452 262 32 0 chr12 114260270 114260396 -6997134 - RSINE1 SINE B4 -33 132 3 3 1456 1273 55 0 0 chr12 114260437 114260602 -6996928 - B2_Mm2 SINE B2 -30 165 1 4 1456 207 100 0 0 chr12 114260605 114260635 -6996895 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 4 1456 455 211 460 0 chr12 114260636 114260788 -6996742 - ID_B1 SINE B4 0 224 3 4 1456 650 61 20 0 chr12 114260799 114260898 -6996632 + (TTTTC)n Simple_repeat Simple_repeat 1 101 0 4 1456 1157 101 11 0 chr12 114260905 114261083 -6996447 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1456 487 128 255 0 chr12 114261087 114261189 -6996341 - B1_Mus2 SINE Alu -3 144 17 4 1456 350 302 107 27 chr12 114261468 114261655 -6995875 - L1MEg LINE L1 -4852 1390 1189 3 1456 186 43 0 0 chr12 114264389 114264412 -6993118 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1456 628 225 22 0 chr12 114264426 114264564 -6992966 + B1_Mur2 SINE Alu 7 147 -2 4 1456 418 247 0 0 chr12 114264572 114264657 -6992873 - RSINE1 SINE B4 -74 91 7 4 1456 834 123 0 0 chr12 114264673 114264803 -6992727 + (TC)n Simple_repeat Simple_repeat 2 131 0 4 1456 974 227 29 5 chr12 114264803 114265007 -6992523 - B3 SINE B2 -7 209 1 4 1456 517 173 18 18 chr12 114265167 114265279 -6992251 + PB1D9 SINE Alu 2 113 -7 4 1456 183 100 0 0 chr12 114265517 114265547 -6991983 + (CAGGG)n Simple_repeat Simple_repeat 3 32 0 4 1456 1551 27 0 21 chr12 114267851 114268043 -6989487 - B2_Mm1a SINE B2 -5 188 1 4 1456 374 219 160 23 chr12 114268908 114269039 -6988491 - B1F1 SINE Alu 0 149 1 4 1456 279 79 0 0 chr12 114272989 114273027 -6984503 + (GGGAGA)n Simple_repeat Simple_repeat 1 38 0 4 1456 616 244 71 6 chr12 114273065 114273234 -6984296 - B3A SINE B2 -18 180 1 4 1456 553 272 133 26 chr12 114273263 114273572 -6983958 + L1MB2 LINE L1 5523 5864 -307 4 1456 450 286 42 0 chr12 114273572 114273691 -6983839 + B4A SINE B4 167 290 -2 4 1456 397 275 7 61 chr12 114273737 114273884 -6983646 + ID_B1 SINE B4 78 216 -8 4 1456 666 203 14 0 chr12 114273753 114273891 -6983639 + B1_Mur1 SINE Alu 10 149 0 4 1456 256 219 31 0 chr12 114274581 114274645 -6982885 + RSINE1 SINE B4 24 89 -76 4 1456 23 33 0 0 chr12 114274699 114274729 -6982801 + AT_rich Low_complexity Low_complexity 1 30 0 4 1456 743 259 32 0 chr12 114274737 114274922 -6982608 - B3A SINE B2 -6 192 2 4 1456 22 0 0 0 chr12 114274922 114274944 -6982586 + AT_rich Low_complexity Low_complexity 1 22 0 4 1456 265 261 28 218 chr12 114275218 114275429 -6982101 - B3A SINE B2 -16 182 12 4 1456 344 300 36 9 chr12 114275503 114275518 -6982012 + ID SINE ID 63 80 -144 4 1456 361 327 0 10 chr12 114275518 114275620 -6981910 + PB1D10 SINE Alu 1 101 -16 4 1456 325 245 71 41 chr12 114276024 114276122 -6981408 - MLT1A0 LTR MaLR -97 268 168 4 1456 253 256 20 109 chr12 114276134 114276235 -6981295 - MLT1A0 LTR MaLR -271 103 12 4 1456 261 98 0 0 chr12 114276941 114276982 -6980548 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 4 1456 377 305 17 17 chr12 114277026 114277146 -6980384 - B4A SINE B4 -2 290 171 4 1456 21 0 0 0 chr12 114277655 114277676 -6979854 + AT_rich Low_complexity Low_complexity 1 21 0 4 1456 1061 223 14 19 chr12 114277676 114277891 -6979639 - B3 SINE B2 -1 215 2 4 1456 1269 48 0 0 chr12 114277909 114278056 -6979474 - B1_Mm SINE Alu 0 147 1 4 1456 293 327 94 33 chr12 114278234 114278446 -6979084 - L1M5 LINE L1 -651 5528 5304 4 1456 466 243 0 9 chr12 114278446 114278554 -6978976 - B3 SINE B2 0 216 110 4 1456 295 255 262 0 chr12 114278575 114278752 -6978778 - B4A SINE B4 -68 224 1 4 1456 262 300 36 96 chr12 114278759 114278772 -6978758 - MT2B2 LTR ERVL -273 311 239 4 1456 729 193 0 7 chr12 114278772 114278913 -6978617 - B1_Mur1 SINE Alu -4 145 6 4 1456 262 300 36 96 chr12 114278913 114278925 -6978605 - MT2B2 LTR ERVL -273 238 156 4 1456 280 327 52 45 chr12 114279037 114279191 -6978339 - L1M5 LINE L1 -1437 4709 4555 4 1456 329 289 35 43 chr12 114279289 114279430 -6978100 - RSINE1 SINE B4 0 165 26 4 1456 1218 41 0 26 chr12 114280279 114280430 -6977100 - B1_Mus1 SINE Alu 0 148 2 4 1456 572 283 148 117 chr12 114280605 114280839 -6976691 - L1MC LINE L1 -2253 3893 3683 4 1456 430 204 80 36 chr12 114280839 114280951 -6976579 - PB1D10 SINE Alu 0 117 1 4 1456 228 283 148 117 chr12 114280951 114281512 -6976018 - L1MC LINE L1 -2456 3690 3073 4 1456 288 347 71 32 chr12 114281697 114281852 -6975678 + Tigger7 DNA MER2_type 1 161 -2330 4 1456 234 0 0 0 chr12 114283458 114283484 -6974046 + (CTGTG)n Simple_repeat Simple_repeat 1 26 0 4 1456 1341 229 63 111 chr12 114284085 114284482 -6973048 - MTE2b LTR MaLR -1 378 1 4 1456 477 272 114 13 chr12 114287315 114287464 -6970066 - RSINE1 SINE B4 0 165 2 4 1456 225 314 47 0 chr12 114290717 114290803 -6966727 - L1MC1 LINE L1 -2 6331 6242 4 1456 904 54 31 0 chr12 114290803 114290932 -6966598 + (CATA)n Simple_repeat Simple_repeat 4 136 0 4 1456 701 154 0 33 chr12 114291769 114291890 -6965640 + B3 SINE B2 1 117 -99 4 1456 289 214 131 0 chr12 114291953 114292037 -6965493 - MLT1A0 LTR MaLR -270 95 1 4 1456 384 319 50 71 chr12 114292037 114292208 -6965322 - MLT1A0-int LTR MaLR 0 1735 1578 4 1456 186 133 0 0 chr12 114292339 114292369 -6965161 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 4 1456 274 286 0 25 chr12 114292417 114292496 -6965034 - RSINE1 SINE B4 -70 95 19 4 1456 264 122 0 0 chr12 114292515 114292556 -6964974 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1456 1328 14 0 0 chr12 114292596 114292743 -6964787 - B1_Mm SINE Alu 0 147 1 4 1456 750 247 6 18 chr12 114292752 114292921 -6964609 - B3 SINE B2 -10 206 40 4 1456 428 370 77 0 chr12 114292938 114293119 -6964411 - MLT-int LTR MaLR -350 1385 1191 4 1456 604 278 29 13 chr12 114293482 114293697 -6963833 - B3A SINE B2 0 216 1 4 1456 431 344 135 19 chr12 114293697 114293951 -6963579 - MLT-int LTR MaLR -1138 597 313 4 1456 291 286 96 33 chr12 114294047 114294278 -6963252 - MLT1A1 LTR MaLR -8 366 118 4 22 488 309 65 6 chr12 114294669 114294838 -6962692 + B4A SINE B4 91 269 -23 4 1457 300 240 208 32 chr12 114296142 114296267 -6961263 + B1F SINE Alu 2 148 -1 4 1457 1993 135 167 9 chr12 114297050 114297386 -6960144 - ORR1B1 LTR MaLR -1 393 5 4 1457 717 262 0 7 chr12 114297508 114297658 -6959872 - RSINE1 SINE B4 -16 149 1 4 1457 22 0 0 0 chr12 114299295 114299317 -6958213 + GC_rich Low_complexity Low_complexity 1 22 0 4 1457 329 243 14 0 chr12 114309267 114309337 -6948193 - ID4 SINE ID -11 72 2 4 1457 558 0 0 0 chr12 114310755 114310817 -6946713 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1457 180 0 0 0 chr12 114310817 114310836 -6946694 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1457 216 278 172 16 chr12 114311765 114311893 -6945637 + MIRc SINE MIR 79 226 -42 4 1457 1214 43 0 0 chr12 114314925 114315065 -6942465 - B1_Mus2 SINE Alu -7 140 1 4 1457 342 293 62 87 chr12 114315189 114315219 -6942311 + B4A SINE B4 68 224 -68 4 1457 611 191 114 0 chr12 114315219 114315350 -6942180 + B1_Mur1 SINE Alu 2 147 -2 4 1457 1208 68 0 0 chr12 114315395 114315541 -6941989 + B1_Mus2 SINE Alu 2 147 0 4 1457 225 0 0 0 chr12 114315541 114315566 -6941964 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1457 641 191 22 7 chr12 114316071 114316208 -6941322 - ID_B1 SINE B4 0 224 86 4 1457 241 286 24 89 chr12 114316389 114316512 -6941018 - MLT1F LTR MaLR -297 251 137 4 1457 432 0 0 0 chr12 114316577 114316625 -6940905 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1457 468 0 0 0 chr12 114316625 114316676 -6940854 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1457 888 112 0 43 chr12 114316771 114316911 -6940619 + B1_Mus1 SINE Alu 2 135 -13 4 1457 324 0 0 0 chr12 114316911 114316947 -6940583 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 4 1457 384 255 88 62 chr12 114317138 114317251 -6940279 - PB1D10 SINE Alu 0 117 2 4 1457 526 277 20 111 chr12 114317269 114317468 -6940062 - B3A SINE B2 -16 182 2 4 1457 264 162 12 0 chr12 114317715 114317765 -6939765 + B1_Mur1 SINE Alu 90 144 -6 4 1457 1386 114 0 5 chr12 114317876 114318070 -6939460 + B2_Mm2 SINE B2 1 193 -2 4 1457 1608 47 0 0 chr12 114318072 114318263 -6939267 + B2_Mm1a SINE B2 1 191 -2 4 1457 358 231 43 11 chr12 114318776 114318868 -6938662 + PB1D10 SINE Alu 21 115 -2 4 1457 711 231 55 79 chr12 114318913 114318955 -6938575 + B3 SINE B2 1 35 -181 4 1457 1088 101 142 0 chr12 114318955 114319124 -6938406 + B2_Mm2 SINE B2 2 194 -1 4 1457 711 231 55 79 chr12 114319124 114319283 -6938247 + B3 SINE B2 36 197 -19 4 1457 1227 54 7 0 chr12 114319417 114319564 -6937966 - B1_Mus1 SINE Alu 0 148 1 4 1457 814 162 7 0 chr12 114319566 114319708 -6937822 - B1_Mus1 SINE Alu 0 148 6 4 1457 1019 75 7 0 chr12 114319709 114319855 -6937675 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 4 1457 392 179 10 139 chr12 114319855 114320063 -6937467 - RMER17C LTR ERVK -133 277 97 4 1457 369 62 0 0 chr12 114320113 114320161 -6937369 + (TCC)n Simple_repeat Simple_repeat 2 49 0 4 1457 635 111 32 64 chr12 114320178 114320303 -6937227 - B1_Mur2 SINE Alu -7 142 22 4 1457 401 73 68 12 chr12 114320374 114320454 -6937076 + B1_Mus2 SINE Alu 10 138 -9 4 1457 360 0 0 0 chr12 114320454 114320494 -6937036 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1457 934 163 52 0 chr12 114320940 114321112 -6936418 + B2_Mm2 SINE B2 1 181 -14 4 1457 616 170 13 13 chr12 114321185 114321334 -6936196 + (TATG)n Simple_repeat Simple_repeat 4 152 0 4 1457 243 206 10 40 chr12 114321354 114321455 -6936075 + (TATG)n Simple_repeat Simple_repeat 1 98 0 4 1457 620 275 29 23 chr12 114321489 114321664 -6935866 - B4A SINE B4 0 292 117 4 1457 594 235 0 0 chr12 114321768 114321887 -6935643 - PB1D9 SINE Alu -1 119 1 4 1457 23 0 0 0 chr12 114321962 114321985 -6935545 + AT_rich Low_complexity Low_complexity 1 23 0 4 1457 756 187 70 21 chr12 114321985 114322127 -6935403 - B1_Mur3 SINE Alu 0 149 1 5 1457 672 235 144 36 chr12 114322145 114322339 -6935191 - B3 SINE B2 0 216 2 5 1457 720 181 51 0 chr12 114322695 114322833 -6934697 + B1_Mus1 SINE Alu 3 147 -1 5 1457 332 285 163 6 chr12 114322881 114323047 -6934483 - HAL1 LINE L1 -866 1641 1450 5 1457 1003 159 116 5 chr12 114323112 114323302 -6934228 - B3 SINE B2 0 216 6 5 1457 305 348 108 44 chr12 114323309 114323500 -6934030 - HAL1 LINE L1 -1053 1454 1251 5 1457 1085 50 58 0 chr12 114323500 114323639 -6933891 - B1_Mus1 SINE Alu -1 147 1 5 1457 305 348 108 44 chr12 114323639 114323707 -6933823 - HAL1 LINE L1 -1257 1250 1174 5 1457 180 0 0 0 chr12 114323707 114323727 -6933803 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1457 305 348 108 44 chr12 114323727 114323761 -6933769 - HAL1 LINE L1 -1334 1173 1141 5 1457 254 379 118 5 chr12 114324657 114324861 -6932669 - MLT1A0 LTR MaLR -12 353 127 5 1457 378 0 0 0 chr12 114325037 114325079 -6932451 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1457 657 274 77 5 chr12 114325429 114325621 -6931909 - B3A SINE B2 -18 198 1 5 1457 636 14 0 0 chr12 114325631 114325704 -6931826 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 1457 1302 93 54 5 chr12 114329893 114330077 -6927453 + B2_Mm2 SINE B2 2 194 -1 5 1457 1227 41 14 0 chr12 114330081 114330226 -6927304 + B1_Mm SINE Alu 1 147 0 5 1457 501 266 0 0 chr12 114330280 114330389 -6927141 + PB1D9 SINE Alu 3 111 -9 5 1457 703 243 116 5 chr12 114330689 114330879 -6926651 - B3 SINE B2 -5 211 1 5 1457 733 171 232 13 chr12 114330984 114331288 -6926242 - Lx9 LINE L1 0 7644 7274 5 1457 1037 141 124 10 chr12 114331316 114331510 -6926020 - B3 SINE B2 0 216 1 5 1457 836 249 139 98 chr12 114331679 114331840 -6925690 - MTD LTR MaLR -56 363 210 5 1457 3243 34 5 3 chr12 114331840 114332223 -6925307 - L1Md_F3 LINE L1 0 6584 6201 5 1457 1229 41 7 0 chr12 114332228 114332374 -6925156 - B1_Mus2 SINE Alu 0 147 1 5 1457 836 249 139 98 chr12 114332374 114332544 -6924986 - MTD LTR MaLR -210 209 12 5 1457 2316 48 16 9 chr12 114332663 114332980 -6924550 + ORR1A2 LTR MaLR 1 319 -8 5 1457 811 202 236 17 chr12 114332971 114333263 -6924267 - MTC-int LTR MaLR -117 1141 786 5 1457 297 0 0 0 chr12 114333291 114333324 -6924206 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1457 453 210 0 39 chr12 114333349 114333453 -6924077 - B1_Mur1 SINE Alu -10 139 40 5 1457 390 143 0 87 chr12 114333450 114333542 -6923988 - PB1D9 SINE Alu -34 86 3 5 1457 225 273 0 111 chr12 114333457 114333556 -6923974 - ID_B1 SINE B4 -67 157 70 5 1457 342 152 61 0 chr12 114334810 114334876 -6922654 - B1_Mur2 SINE Alu -2 147 78 5 1457 284 225 38 0 chr12 114334876 114334890 -6922640 - ID_B1 SINE B4 -2 222 140 5 1457 38 49 0 35 chr12 114336333 114336418 -6921112 + GC_rich Low_complexity Low_complexity 1 82 0 5 1457 225 83 0 0 chr12 114336471 114336507 -6921023 + (CGG)n Simple_repeat Simple_repeat 1 36 0 5 1457 275 132 11 32 chr12 114336530 114336624 -6920906 + C-rich Low_complexity Low_complexity 3 94 0 5 1457 322 207 34 17 chr12 114336691 114336809 -6920721 + C-rich Low_complexity Low_complexity 1 120 0 5 1457 28 29 0 0 chr12 114336868 114336903 -6920627 + GC_rich Low_complexity Low_complexity 1 35 0 5 1457 28 0 0 0 chr12 114336994 114337022 -6920508 + GC_rich Low_complexity Low_complexity 1 28 0 5 1457 811 114 130 0 chr12 114339725 114339856 -6917674 - B1_Mus1 SINE Alu 0 148 1 5 1457 1336 63 25 41 chr12 114340154 114340351 -6917179 - B2_Mm2 SINE B2 0 195 2 5 1457 605 162 0 0 chr12 114340354 114340453 -6917077 - B1_Mus2 SINE Alu 0 147 49 5 1457 240 154 0 0 chr12 114340511 114340550 -6916980 - B1_Mur4 SINE Alu -110 40 2 5 1457 386 242 55 16 chr12 114342590 114342704 -6914826 - PB1 SINE Alu -33 116 1 5 1457 290 273 16 127 chr12 114342593 114342719 -6914811 - B4A SINE B4 -99 193 82 5 1457 462 18 0 0 chr12 114343367 114343422 -6914108 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1457 609 229 27 14 chr12 114343422 114343558 -6913972 - B1_Mur4 SINE Alu -10 140 3 5 1457 606 146 114 15 chr12 114344149 114344281 -6913249 - B1_Mur3 SINE Alu -1 148 4 5 1457 231 36 0 0 chr12 114344284 114344312 -6913218 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 5 1457 839 181 0 27 chr12 114344325 114344473 -6913057 - B1_Mus1 SINE Alu 0 148 5 5 1457 288 0 0 0 chr12 114344533 114344565 -6912965 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1457 359 300 75 23 chr12 114344565 114344698 -6912832 - RSINE1 SINE B4 -6 159 20 5 1457 691 180 58 26 chr12 114344805 114344959 -6912571 + Cheshire DNA MER1_type 43 201 -2219 5 1457 950 339 64 14 chr12 114345015 114345374 -6912156 - MER21B LTR ERV1 -49 814 438 5 1457 232 196 59 0 chr12 114345366 114345417 -6912113 - MER21B LTR ERV1 -660 203 150 5 1457 333 0 0 0 chr12 114345434 114345471 -6912059 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1457 420 234 0 112 chr12 114345834 114345959 -6911571 - MER21B LTR ERV1 -752 111 1 5 1457 387 361 102 28 chr12 114346706 114346991 -6910539 + Cheshire DNA MER1_type 1368 1673 -747 5 1457 721 115 18 0 chr12 114348762 114348875 -6908655 - PB1D9 SINE Alu 0 120 6 5 1457 1054 23 0 0 chr12 114348917 114348933 -6908597 + B1_Mus1 SINE Alu 8 139 -9 5 1457 237 290 67 80 chr12 114348933 114349049 -6908481 - YREP_Mm Unknown Unknown -1518 294 186 5 1457 306 0 0 0 chr12 114349049 114349083 -6908447 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1457 237 290 67 80 chr12 114349083 114349116 -6908414 - YREP_Mm Unknown Unknown -1627 185 148 5 1457 536 157 101 36 chr12 114350120 114350259 -6907271 - B2_Mm2 SINE B2 0 195 48 5 1457 966 140 126 21 chr12 114350606 114350796 -6906734 - B3 SINE B2 -5 211 2 5 1457 528 77 30 0 chr12 114352301 114352390 -6905140 - B1_Mus2 SINE Alu -27 93 1 5 1457 1361 244 41 38 chr12 114353512 114353853 -6903677 + MTE2a LTR MaLR 38 379 0 5 1457 558 221 24 24 chr12 114354531 114354656 -6902874 - B1_Mur2 SINE Alu -8 141 17 5 1457 268 302 0 127 chr12 114354558 114354668 -6902862 - MT2B LTR ERVL -337 264 169 5 1457 218 250 0 0 chr12 114356100 114356148 -6901382 + (CACG)n Simple_repeat Simple_repeat 4 51 0 5 1457 618 14 0 0 chr12 114359878 114359949 -6897581 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1457 776 179 37 0 chr12 114360908 114361042 -6896488 - B1_Mur2 SINE Alu -9 140 2 5 1457 786 206 158 22 chr12 114361707 114361891 -6895639 - B3 SINE B2 -7 209 1 5 1457 278 203 0 78 chr12 114361899 114361963 -6895567 - PB1D10 SINE Alu -6 111 53 5 1457 270 0 0 0 chr12 114362006 114362036 -6895494 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1457 623 207 41 0 chr12 114362107 114362228 -6895302 - RSINE1 SINE B4 -38 127 2 5 1457 189 0 0 0 chr12 114362249 114362270 -6895260 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 5 1457 635 108 0 8 chr12 114362268 114362389 -6895141 + (TTCC)n Simple_repeat Simple_repeat 2 121 0 5 1457 239 313 96 0 chr12 114362402 114362485 -6895045 - RSINE1 SINE B4 -43 122 32 5 1457 1091 89 0 27 chr12 114363548 114363698 -6893832 + B1_Mus2 SINE Alu 1 146 -1 5 1457 459 0 0 0 chr12 114363709 114363760 -6893770 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1457 475 276 36 36 chr12 114363780 114363919 -6893611 - B3 SINE B2 -77 139 1 5 1457 189 94 0 0 chr12 114366624 114366656 -6890874 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1457 346 186 0 0 chr12 114366982 114367041 -6890489 + B1F1 SINE Alu 3 61 -88 5 1457 309 197 0 47 chr12 114366986 114367050 -6890480 + B4A SINE B4 92 152 -140 5 1457 328 270 0 0 chr12 114367620 114367694 -6889836 + tRNA-Ala-GCA tRNA tRNA 2 75 0 5 1457 229 203 117 17 chr12 114367971 114368031 -6889499 - MLT1A1 LTR MaLR -34 374 309 5 1457 753 114 37 30 chr12 114370394 114370529 -6887001 - B1_Mus1 SINE Alu -5 143 8 5 1457 565 211 25 101 chr12 114370529 114370550 -6886980 - ID_B1 SINE B4 -3 219 76 5 1457 368 202 40 15 chr12 114373191 114373293 -6884237 + PB1D10 SINE Alu 8 109 -8 5 1457 22 0 0 0 chr12 114375229 114375251 -6882279 + AT_rich Low_complexity Low_complexity 1 22 0 5 1457 23 68 0 0 chr12 114378391 114378435 -6879095 + GC_rich Low_complexity Low_complexity 1 44 0 5 1457 26 30 0 0 chr12 114378700 114378733 -6878797 + GC_rich Low_complexity Low_complexity 1 33 0 5 1457 864 70 98 30 chr12 114381841 114381974 -6875556 + B1_Mus1 SINE Alu 1 142 -6 5 1457 207 0 0 0 chr12 114381977 114382000 -6875530 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1457 486 0 0 0 chr12 114383728 114383782 -6873748 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1457 246 62 0 0 chr12 114386409 114386441 -6871089 + (GGA)n Simple_repeat Simple_repeat 1 32 0 5 1457 371 231 106 0 chr12 114387203 114387307 -6870223 - ID_B1 SINE B4 0 224 110 5 1457 231 170 0 0 chr12 114387455 114387502 -6870028 + CT-rich Low_complexity Low_complexity 3 49 0 5 1457 950 128 8 0 chr12 114387913 114388046 -6869484 + B1_Mus1 SINE Alu 1 134 -14 5 1457 210 37 0 0 chr12 114388051 114388078 -6869452 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 5 1457 486 0 0 0 chr12 114388230 114388284 -6869246 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1457 232 200 0 0 chr12 114389777 114389817 -6867713 - PB1D7 SINE Alu -8 112 73 5 1457 856 123 0 76 chr12 114391109 114391267 -6866263 + B1_Mur4 SINE Alu 5 150 0 5 1457 334 276 40 126 chr12 114391118 114391292 -6866238 + B4A SINE B4 96 254 -38 5 1457 210 71 0 0 chr12 114392772 114392800 -6864730 + (TAGTG)n Simple_repeat Simple_repeat 5 32 0 5 1457 226 209 14 56 chr12 114393516 114393587 -6863943 + CT-rich Low_complexity Low_complexity 6 73 0 5 1457 1289 86 17 6 chr12 114396826 114397002 -6860528 + B2_Mm2 SINE B2 2 179 -16 5 1457 1172 49 14 0 chr12 114397002 114397146 -6860384 + B1_Mus2 SINE Alu 2 147 0 6 1457 199 93 23 23 chr12 114397146 114397190 -6860340 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 6 1457 597 49 0 0 chr12 114402898 114402979 -6854551 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1457 636 138 175 24 chr12 114404116 114404242 -6853288 + B1_Mus2 SINE Alu 3 147 0 6 1457 1187 48 0 0 chr12 114405762 114405908 -6851622 - B1_Mus2 SINE Alu 0 147 2 6 1457 981 251 18 0 chr12 114406870 114407093 -6850437 + B4A SINE B4 6 232 -60 6 1457 1266 112 0 6 chr12 114407096 114407276 -6850254 + B2_Mm2 SINE B2 2 180 -15 6 1457 44 56 0 0 chr12 114407304 114407376 -6850154 + AT_rich Low_complexity Low_complexity 1 72 0 6 1457 1089 141 10 35 chr12 114407410 114407608 -6849922 + B2_Mm2 SINE B2 2 194 -1 6 1457 998 256 9 18 chr12 114407805 114408028 -6849502 + ID_B1 SINE B4 1 221 -3 6 1457 450 264 119 68 chr12 114408136 114408368 -6849162 - MER119 DNA MER1_type -269 314 71 6 1457 406 290 10 10 chr12 114408368 114408469 -6849061 + B1_Mm SINE Alu 1 101 -46 6 1457 1170 95 0 0 chr12 114408620 114408767 -6848763 + B1_Mus1 SINE Alu 2 148 0 6 1457 305 331 63 46 chr12 114409220 114409394 -6848136 - B4A SINE B4 -32 260 84 6 1457 703 115 98 0 chr12 114409481 114409603 -6847927 - B1_Mur3 SINE Alu -1 148 15 6 1457 410 192 0 116 chr12 114409515 114409627 -6847903 - MT2B LTR ERVL -344 257 159 6 1457 814 169 209 60 chr12 114409685 114409867 -6847663 - B3 SINE B2 -7 209 1 6 1457 318 200 67 0 chr12 114409867 114409942 -6847588 - B4A SINE B4 -62 230 151 6 1457 320 226 60 0 chr12 114410159 114410243 -6847287 - ID_B1 SINE B4 -2 222 134 6 1457 323 141 16 0 chr12 114410256 114410320 -6847210 + (TAA)n Simple_repeat Simple_repeat 3 67 0 6 1457 431 233 0 11 chr12 114410336 114410427 -6847103 - RSINE1 SINE B4 -65 100 11 6 1457 1355 79 0 11 chr12 114410452 114410631 -6846899 - B2_Mm2 SINE B2 -18 177 1 6 1457 351 44 0 0 chr12 114411593 114411638 -6845892 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1457 448 290 15 30 chr12 114411638 114411773 -6845757 - RSINE1 SINE B4 -16 149 17 6 1457 341 289 0 22 chr12 114411770 114411862 -6845668 - ID_B1 SINE B4 -63 161 72 6 1457 750 120 0 49 chr12 114412161 114412284 -6845246 + B1_Mur3 SINE Alu 2 118 -31 6 1457 890 211 89 5 chr12 114412743 114412934 -6844596 - B3 SINE B2 -8 208 2 6 1457 932 230 0 47 chr12 114412961 114413175 -6844355 - B3 SINE B2 -10 206 3 6 1457 444 276 69 73 chr12 114413244 114413314 -6844216 - L1M5 LINE L1 -2020 4126 4052 6 1457 1272 85 68 0 chr12 114413314 114413490 -6844040 + B2_Mm2 SINE B2 2 189 -6 6 1457 444 276 69 73 chr12 114413490 114413708 -6843822 - L1M5 LINE L1 -2095 4051 3840 6 1457 862 218 70 20 chr12 114414061 114414262 -6843268 + B3 SINE B2 1 211 -5 6 1457 1171 48 7 27 chr12 114415170 114415320 -6842210 + B1_Mus2 SINE Alu 1 147 0 6 1457 695 266 104 8 chr12 114415519 114415854 -6841676 - MTD LTR MaLR -15 404 27 6 1457 4679 39 33 16 chr12 114416126 114416702 -6840828 + L1Md_F2 LINE L1 5996 6581 -1 6 1457 839 109 84 23 chr12 114416756 114416887 -6840643 - B1_Mur2 SINE Alu -10 139 1 6 1457 235 254 59 15 chr12 114417078 114417146 -6840384 - tRNA-Ala-GCY_ tRNA tRNA -1 74 4 6 1457 289 222 48 0 chr12 114417092 114417155 -6840375 - ID4 SINE ID -17 66 1 6 1457 550 283 20 7 chr12 114417196 114417342 -6840188 - B1_Mur1 SINE Alu -1 148 1 6 1457 318 85 119 0 chr12 114417375 114417434 -6840096 - Lx9 LINE L1 -8 7636 7571 6 1457 355 270 0 53 chr12 114417615 114417709 -6839821 - MER47A DNA MER2_type -258 108 20 6 1457 1137 49 35 0 chr12 114417781 114417923 -6839607 - B1_Mus2 SINE Alu 0 147 1 6 1457 246 280 75 11 chr12 114417939 114418033 -6839497 - PB1D10 SINE Alu -17 100 1 6 1457 764 145 35 35 chr12 114418033 114418176 -6839354 - B1_Mur4 SINE Alu -2 148 6 6 1457 217 242 0 33 chr12 114418507 114418560 -6838970 + polypyrimidine Low_complexity Low_complexity 1 51 0 6 1457 809 166 29 7 chr12 114418569 114418709 -6838821 - B1_Mur2 SINE Alu -6 143 1 6 1457 226 314 105 35 chr12 114418711 114419024 -6838506 - L1MD LINE L1 -1083 5063 4729 6 1457 704 163 155 0 chr12 114419031 114419160 -6838370 + B1_Mur3 SINE Alu 1 149 0 6 1457 249 301 13 27 chr12 114419178 114419253 -6838277 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 6 1457 392 362 101 28 chr12 114419266 114419501 -6838029 - L1M5 LINE L1 -1430 4716 4456 6 1457 1127 75 0 52 chr12 114419501 114419656 -6837874 - B1_Mus2 SINE Alu 0 147 1 6 1457 392 362 101 28 chr12 114419656 114419747 -6837783 - L1M5 LINE L1 -1691 4455 4367 6 1457 1260 41 0 0 chr12 114419757 114419904 -6837626 + B1_Mus1 SINE Alu 2 148 0 6 1457 502 264 55 11 chr12 114419950 114420113 -6837417 - B3A SINE B2 -3 213 50 6 1457 487 184 30 10 chr12 114420148 114420247 -6837283 - B1_Mur1 SINE Alu -1 148 48 6 1457 324 0 0 0 chr12 114420263 114420299 -6837231 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1457 1488 146 105 72 chr12 114420325 114420657 -6836873 - Lx5 LINE L1 -1 7049 6707 6 1457 1153 136 115 5 chr12 114420864 114421064 -6836466 - URR1A DNA MER1_type 0 226 5 6 1457 497 299 36 0 chr12 114421229 114421366 -6836164 - ID_B1 SINE B4 -3 221 80 6 1457 256 74 55 18 chr12 114421520 114421575 -6835955 + (TTTTTG)n Simple_repeat Simple_repeat 3 59 0 6 1457 781 162 7 7 chr12 114421576 114421713 -6835817 - B1_Mur1 SINE Alu 0 149 13 6 1457 514 228 19 65 chr12 114421713 114421730 -6835800 - ID_B1 SINE B4 0 223 77 6 1457 297 331 75 53 chr12 114422430 114422605 -6834925 - MLT1D LTR MaLR -135 370 193 6 1457 624 12 12 0 chr12 114422605 114422686 -6834844 - L1Md_T LINE L1 0 6582 6501 6 1457 297 331 75 53 chr12 114422686 114422829 -6834701 - MLT1D LTR MaLR -313 192 45 6 1457 203 215 84 0 chr12 114424044 114424151 -6833379 + (CGCGG)n Simple_repeat Simple_repeat 2 117 0 6 1457 270 207 0 0 chr12 114424245 114424303 -6833227 + (CGG)n Simple_repeat Simple_repeat 2 59 0 6 1458 24 0 0 0 chr12 114427333 114427357 -6830173 + GC_rich Low_complexity Low_complexity 1 24 0 6 1458 406 245 29 39 chr12 114430419 114430521 -6827009 - PB1 SINE Alu -7 120 20 6 1458 648 193 140 72 chr12 114430555 114430762 -6826768 - ID_B1 SINE B4 -3 221 1 6 1458 245 269 112 53 chr12 114431023 114431192 -6826338 + LTR40a LTR ERVL 230 465 -54 6 1458 2196 146 35 65 chr12 114431906 114432281 -6825249 - MTC LTR MaLR 0 421 47 6 1458 1188 56 0 0 chr12 114432281 114432423 -6825107 - B1_Mus1 SINE Alu -6 142 1 6 1458 2196 146 35 65 chr12 114432423 114432478 -6825052 - MTC LTR MaLR -375 46 4 6 1458 556 289 39 63 chr12 114432724 114432950 -6824580 + MLT1A1 LTR MaLR 134 396 -12 6 1458 2596 102 44 44 chr12 114433765 114434176 -6823354 - IAPLTR2a LTR ERVK 0 411 1 6 1458 25607 11 3 0 chr12 114434176 114437123 -6820407 - IAPEz-int LTR ERVK 0 6481 3525 6 1458 888 88 24 0 chr12 114437123 114437248 -6820282 - IAPEz-int LTR ERVK -2770 4910 4783 6 1458 1732 106 0 0 chr12 114437243 114437489 -6820041 - IAPEz-int LTR ERVK -5183 2497 2252 6 1458 12130 30 1 0 chr12 114437490 114438932 -6818598 - IAPEz-int LTR ERVK -5004 1477 35 6 1458 2607 99 44 44 chr12 114438942 114439353 -6818177 - IAPLTR2a LTR ERVK 0 411 1 6 1458 850 155 7 0 chr12 114439944 114440086 -6817444 - B1_Mus2 SINE Alu 0 147 5 6 1458 270 280 62 53 chr12 114440556 114440669 -6816861 - PB1D9 SINE Alu -6 114 1 6 1458 311 246 45 90 chr12 114440775 114440909 -6816621 + B4A SINE B4 65 192 -100 6 1458 676 187 7 14 chr12 114440815 114440942 -6816588 + B1F2 SINE Alu 9 136 -13 6 1458 552 81 0 0 chr12 114440942 114441029 -6816501 + (CAAG)n Simple_repeat Simple_repeat 1 87 0 6 1458 676 187 7 14 chr12 114441029 114441042 -6816488 + B1F2 SINE Alu 137 147 -2 6 1458 1521 239 52 34 chr12 114441199 114441585 -6815945 - MTD LTR MaLR -25 394 2 6 1458 888 61 0 0 chr12 114441647 114441762 -6815768 + (TA)n Simple_repeat Simple_repeat 2 116 0 6 1458 441 347 48 80 chr12 114442393 114442791 -6814739 - Lx8 LINE L1 -16 7457 7073 6 1458 447 78 0 0 chr12 114443331 114443395 -6814135 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 6 1458 1045 112 42 16 chr12 114443395 114443585 -6813945 - Lx2 LINE L1 -27 6970 6776 6 1458 2377 88 40 23 chr12 114443586 114443934 -6813596 + Lx2 LINE L1 6439 6792 -205 6 1458 1775 285 128 89 chr12 114444151 114444859 -6812671 - Lx8 LINE L1 -1 7472 6708 6 1458 1125 120 17 0 chr12 114444859 114445034 -6812496 - B2_Mm1t SINE B2 -14 179 2 6 1458 1775 285 128 89 chr12 114445034 114445291 -6812239 - Lx8 LINE L1 -766 6707 6469 6 1458 496 266 8 31 chr12 114445298 114445426 -6812104 + B4A SINE B4 107 231 -61 6 1458 823 298 86 72 chr12 114445949 114446479 -6811051 + L1_Rod LINE L1 1184 1735 -4112 6 1458 1170 77 40 29 chr12 114446479 114446634 -6810896 + B2_Mm2 SINE B2 1 160 -35 6 1458 375 23 0 0 chr12 114446634 114446678 -6810852 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1458 1170 77 40 29 chr12 114446678 114446696 -6810834 + B2_Mm2 SINE B2 161 176 -19 6 1458 823 297 90 75 chr12 114446696 114446772 -6810758 + L1_Rod LINE L1 1736 1782 -4065 6 1458 756 214 158 6 chr12 114446772 114446955 -6810575 - B3 SINE B2 -3 213 3 6 1458 823 297 90 75 chr12 114446955 114447147 -6810383 + L1_Rod LINE L1 1783 1998 -3849 6 1458 1559 36 0 15 chr12 114447828 114448024 -6809506 - B2_Mm1a SINE B2 0 193 1 6 1458 641 152 11 113 chr12 114448316 114448501 -6809029 + MMVL30-int LTR ERV1 1497 1662 -2036 6 1458 2575 173 40 19 chr12 114448520 114449065 -6808465 + MMVL30-int LTR ERV1 1634 2231 -1467 6 1458 3884 249 37 30 chr12 114449101 114450513 -6807017 + MMVL30-int LTR ERV1 2877 5392 -2386 6 1458 592 220 8 0 chr12 114451121 114451239 -6806291 + B1_Mus2 SINE Alu 16 134 -13 6 1458 446 0 0 18 chr12 114451240 114451295 -6806235 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1458 779 280 15 55 chr12 114451326 114451598 -6805932 + Lx8 LINE L1 6293 6553 -920 6 1458 893 270 154 3 chr12 114451603 114451908 -6805622 + Lx8 LINE L1 7120 7470 -3 6 1458 726 215 0 0 chr12 114451911 114452041 -6805489 + B3 SINE B2 1 130 -86 6 1458 954 72 14 14 chr12 114452101 114452242 -6805288 + B2_Mm1t SINE B2 53 193 0 6 1458 337 240 0 0 chr12 114452251 114452326 -6805204 + B4A SINE B4 217 291 -1 6 1458 583 143 31 0 chr12 114452359 114452457 -6805073 + U6 snRNA snRNA 1 101 -6 6 1458 210 296 19 58 chr12 114452900 114453004 -6804526 + MIR SINE MIR 71 170 -92 6 1458 1848 146 29 32 chr12 114453092 114453439 -6804091 - ORR1B1 LTR MaLR -8 386 41 7 1458 214 269 73 15 chr12 114453494 114453562 -6803968 - PB1D10 SINE Alu -7 110 39 7 1458 728 191 0 0 chr12 114454927 114455063 -6802467 + B1_Mus2 SINE Alu 10 145 -2 7 1458 343 301 118 92 chr12 114455313 114455551 -6801979 + B4A SINE B4 17 260 -32 7 1458 3209 41 5 0 chr12 114456419 114456813 -6800717 + MTA_Mm LTR MaLR 1 396 0 7 1458 352 216 33 22 chr12 114456962 114457075 -6800455 - RLTR13D3 LTR ERVK -42 1072 983 7 1458 1048 77 0 7 chr12 114457075 114457219 -6800311 - B1_Mm SINE Alu -2 145 3 7 1458 278 258 70 62 chr12 114457219 114457233 -6800297 - RLTR13D3 LTR ERVK -149 673 662 7 1458 253 83 0 0 chr12 114457531 114457567 -6799963 - B2_Mm2 SINE B2 -157 38 3 7 1458 522 0 0 0 chr12 114459190 114459248 -6798282 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1458 503 139 0 163 chr12 114459257 114459338 -6798192 - Lx7 LINE L1 -1447 6249 6188 7 1458 1349 71 6 0 chr12 114459338 114459521 -6798009 - B2_Mm1a SINE B2 -9 184 1 7 1458 503 139 0 163 chr12 114459521 114459568 -6797962 - Lx7 LINE L1 -1509 6187 6142 7 1458 21 36 0 0 chr12 114459985 114460013 -6797517 + AT_rich Low_complexity Low_complexity 1 28 0 7 1458 693 215 155 10 chr12 114460163 114460356 -6797174 - URR1B DNA MER1_type 0 225 5 7 1458 269 309 165 8 chr12 114462880 114462895 -6794635 - B4A SINE B4 -145 147 1 7 1458 679 161 36 0 chr12 114462895 114463007 -6794523 - B3 SINE B2 -100 116 1 7 1458 396 0 0 0 chr12 114463012 114463056 -6794474 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1458 474 18 0 0 chr12 114464729 114464784 -6792746 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1458 210 312 23 15 chr12 114465231 114465361 -6792169 + (TG)n Simple_repeat Simple_repeat 2 132 0 7 1458 298 271 0 58 chr12 114465406 114465594 -6791936 + (TCTG)n Simple_repeat Simple_repeat 2 178 0 7 1458 359 317 0 11 chr12 114465544 114465816 -6791714 + (TG)n Simple_repeat Simple_repeat 1 269 0 7 1458 465 19 0 0 chr12 114466965 114467019 -6790511 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1458 254 319 32 72 chr12 114467099 114467224 -6790306 + RMER12 LTR ERVK 737 856 -466 7 1458 346 141 16 0 chr12 114467551 114467615 -6789915 + HAL1-3A_ME LINE L1 1954 2018 -840 7 1458 240 221 14 14 chr12 114467615 114467684 -6789846 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 1458 719 115 0 8 chr12 114467697 114467828 -6789702 + (CA)n Simple_repeat Simple_repeat 2 131 0 7 1458 261 180 11 22 chr12 114467876 114467967 -6789563 + (CA)n Simple_repeat Simple_repeat 2 91 0 7 1458 518 147 7 20 chr12 114468017 114468163 -6789367 + (CA)n Simple_repeat Simple_repeat 2 145 0 7 1458 432 207 0 17 chr12 114468213 114468289 -6789241 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1458 222 37 0 0 chr12 114468289 114468316 -6789214 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 1458 432 207 0 17 chr12 114468316 114468416 -6789114 + (CA)n Simple_repeat Simple_repeat 1 100 0 7 1458 195 139 0 0 chr12 114468468 114468504 -6789026 + (CATA)n Simple_repeat Simple_repeat 4 39 0 7 1458 758 139 5 0 chr12 114468570 114468780 -6788750 + (CA)n Simple_repeat Simple_repeat 1 211 0 7 1458 255 340 0 50 chr12 114469026 114469125 -6788405 + 5S rRNA rRNA 4 97 -24 7 1458 872 128 49 14 chr12 114469287 114469430 -6788100 - B1_Mus1 SINE Alu 0 148 1 7 1458 250 67 44 0 chr12 114469622 114469667 -6787863 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1458 213 163 0 0 chr12 114471267 114471316 -6786214 + GA-rich Low_complexity Low_complexity 1 49 0 7 1458 249 250 41 10 chr12 114471353 114471450 -6786080 + (CAGAGA)n Simple_repeat Simple_repeat 5 104 0 7 1458 288 0 0 0 chr12 114471491 114471523 -6786007 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1458 188 100 25 0 chr12 114471528 114471568 -6785962 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 7 1458 285 314 11 23 chr12 114471699 114471875 -6785655 + (CAGA)n Simple_repeat Simple_repeat 3 176 0 7 1458 441 316 62 0 chr12 114473289 114473466 -6784064 - Lx8 LINE L1 -955 6518 6331 7 1458 795 182 0 20 chr12 114473533 114473679 -6783851 - B1F2 SINE Alu -5 144 2 7 1458 236 289 75 52 chr12 114473963 114474175 -6783355 - L1MEg LINE L1 -4577 1507 1291 7 1458 351 257 28 14 chr12 114474512 114474654 -6782876 + (CAGAGA)n Simple_repeat Simple_repeat 2 145 0 7 1458 282 161 32 75 chr12 114474608 114474796 -6782734 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 7 1458 536 135 52 10 chr12 114474803 114474900 -6782630 + B3 SINE B2 23 123 -93 7 1458 405 0 0 0 chr12 114474932 114474977 -6782553 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1458 180 0 0 0 chr12 114475082 114475102 -6782428 + (CCTG)n Simple_repeat Simple_repeat 1 20 0 7 1458 441 316 62 0 chr12 114476353 114476530 -6781000 - Lx8 LINE L1 -955 6518 6331 7 1458 822 168 0 20 chr12 114476597 114476743 -6780787 - B1F2 SINE Alu -5 144 2 7 1458 244 353 62 19 chr12 114477029 114477237 -6780293 - L1_Rod LINE L1 -3849 1998 1782 7 1458 444 278 79 0 chr12 114477238 114477364 -6780166 + B3 SINE B2 1 136 -80 7 1458 191 148 37 0 chr12 114477715 114477769 -6779761 + (CAGAGA)n Simple_repeat Simple_repeat 1 56 0 7 1458 264 84 38 112 chr12 114477822 114477902 -6779628 + (CAGAGA)n Simple_repeat Simple_repeat 2 75 0 7 1458 558 146 46 0 chr12 114477904 114478008 -6779522 + B3 SINE B2 9 118 -80 7 1458 494 75 0 12 chr12 114478055 114478136 -6779394 + (CA)n Simple_repeat Simple_repeat 2 81 0 7 1458 1879 189 46 0 chr12 114478393 114478764 -6778766 + RLTR9B2 LTR ERVK 1 388 -32 7 1458 229 209 73 73 chr12 114480706 114480856 -6776674 + (CAGAGA)n Simple_repeat Simple_repeat 5 154 0 7 1458 235 231 42 52 chr12 114481231 114481327 -6776203 + (CAGAGA)n Simple_repeat Simple_repeat 4 98 0 7 1458 221 233 0 28 chr12 114481331 114481437 -6776093 + GA-rich Low_complexity Low_complexity 1 103 0 7 1458 408 309 8 12 chr12 114481851 114482225 -6775305 + GA-rich Low_complexity Low_complexity 1 372 0 7 1458 663 104 17 9 chr12 114482261 114482377 -6775153 + (GA)n Simple_repeat Simple_repeat 2 118 0 7 1458 259 243 7 7 chr12 114483862 114484015 -6773515 + CT-rich Low_complexity Low_complexity 2 154 0 7 1458 219 206 49 0 chr12 114484098 114484200 -6773330 + (TCTCTG)n Simple_repeat Simple_repeat 6 112 0 7 1458 239 286 0 92 chr12 114484228 114484424 -6773106 + (TCTCTG)n Simple_repeat Simple_repeat 1 178 0 7 1458 292 243 14 0 chr12 114484349 114484423 -6773107 + CT-rich Low_complexity Low_complexity 2 76 0 7 1458 348 111 0 0 chr12 114486538 114486601 -6770929 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 7 1458 454 204 47 37 chr12 114486642 114486749 -6770781 - B3 SINE B2 -100 116 9 7 1458 277 117 36 83 chr12 114486750 114486834 -6770696 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 7 1458 203 211 0 43 chr12 114486882 114487021 -6770509 + (TCTCTG)n Simple_repeat Simple_repeat 2 134 0 7 1458 359 253 0 12 chr12 114487106 114487190 -6770340 - B3A SINE B2 -115 83 1 7 1458 274 328 67 19 chr12 114487190 114487398 -6770132 + L1MEf LINE L1 1373 1590 -4610 7 1458 795 171 0 33 chr12 114487682 114487833 -6769697 + B1F2 SINE Alu 2 147 -2 7 1458 412 330 68 0 chr12 114487895 114488071 -6769459 + Lx8 LINE L1 6331 6518 -955 7 1458 219 69 0 0 chr12 114490875 114490904 -6766626 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1458 240 200 49 24 chr12 114495248 114495330 -6762200 + (TCCA)n Simple_repeat Simple_repeat 3 86 0 7 1458 205 152 0 0 chr12 114497881 114497914 -6759616 + GA-rich Low_complexity Low_complexity 1 33 0 7 1458 258 316 40 13 chr12 114499384 114499501 -6758029 + (CAGCC)n Simple_repeat Simple_repeat 5 125 0 7 1458 789 11 0 0 chr12 114499501 114499591 -6757939 + (CATCC)n Simple_repeat Simple_repeat 1 90 0 7 1458 558 261 6 2 chr12 114499591 114499809 -6757721 + (CAGCC)n Simple_repeat Simple_repeat 1 218 0 7 1458 336 322 23 12 chr12 114499819 114499992 -6757538 + (CAGCT)n Simple_repeat Simple_repeat 5 179 0 7 1458 233 182 18 0 chr12 114500064 114500119 -6757411 + (CAGCC)n Simple_repeat Simple_repeat 1 56 0 1 1458 304 307 0 58 chr12 114500136 114500181 -6757349 + (CAGCC)n Simple_repeat Simple_repeat 1 45 0 1 1458 180 111 0 0 chr12 114500181 114500208 -6757322 + (CAGCT)n Simple_repeat Simple_repeat 1 27 0 2 1458 304 307 0 58 chr12 114500208 114500283 -6757247 + (CAGCC)n Simple_repeat Simple_repeat 1 69 0 3 1458 556 220 6 17 chr12 114500285 114500411 -6757119 + (CAGCT)n Simple_repeat Simple_repeat 2 128 0 4 1458 1195 35 24 6 chr12 114500411 114500581 -6756949 + (TCTCC)n Simple_repeat Simple_repeat 2 174 0 5 1458 556 220 6 17 chr12 114500581 114500769 -6756761 + (CAGCT)n Simple_repeat Simple_repeat 1 185 0 6 1458 816 201 0 0 chr12 114500783 114501256 -6756274 + (CAGCC)n Simple_repeat Simple_repeat 1 473 0 7 1458 283 287 9 0 chr12 114501286 114501509 -6756021 + (CAGCC)n Simple_repeat Simple_repeat 1 225 0 7 1458 256 240 20 0 chr12 114501528 114501628 -6755902 + (CTTAG)n Simple_repeat Simple_repeat 1 102 0 8 1458 492 312 23 0 chr12 114501635 114501819 -6755711 + (CAGCC)n Simple_repeat Simple_repeat 1 188 0 9 1458 594 0 0 0 chr12 114501819 114501885 -6755645 + (CATCC)n Simple_repeat Simple_repeat 4 69 0 1 1458 295 354 6 18 chr12 114501885 114501949 -6755581 + (CTTAG)n Simple_repeat Simple_repeat 4 67 0 1 1458 225 292 66 51 chr12 114501977 114502114 -6755416 + MLT1H LTR MaLR 311 449 -100 1 1458 255 342 17 17 chr12 114502115 114502231 -6755299 + (CAGCC)n Simple_repeat Simple_repeat 3 118 0 1 1458 251 305 7 0 chr12 114502247 114502401 -6755129 + (CAGCC)n Simple_repeat Simple_repeat 5 159 0 1 1458 219 311 0 0 chr12 114502447 114502579 -6754951 + (CAGTC)n Simple_repeat Simple_repeat 4 135 0 1 1458 471 237 11 6 chr12 114502633 114502811 -6754719 + (CAGCT)n Simple_repeat Simple_repeat 2 180 0 1 1458 233 341 96 18 chr12 114504518 114504685 -6752845 - MLT1A0 LTR MaLR 0 365 186 1 1458 246 32 0 0 chr12 114505677 114505708 -6751822 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1458 408 16 49 0 chr12 114508055 114508116 -6749414 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1458 492 62 0 0 chr12 114508763 114508827 -6748703 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1458 25 0 0 0 chr12 114510842 114510867 -6746663 + AT_rich Low_complexity Low_complexity 1 25 0 2 1458 2033 55 0 17 chr12 114510870 114511168 -6746362 - MusHAL1 LINE L1 0 2712 2420 2 1458 422 339 17 0 chr12 114512783 114512957 -6744573 + (CAGCC)n Simple_repeat Simple_repeat 2 178 0 2 1458 447 296 6 38 chr12 114512971 114513154 -6744376 + (CAGCT)n Simple_repeat Simple_repeat 3 179 0 2 1458 334 337 23 11 chr12 114513171 114513348 -6744182 + (CAGCT)n Simple_repeat Simple_repeat 2 180 0 2 1458 448 256 6 11 chr12 114513349 114513527 -6744003 + (CAGCC)n Simple_repeat Simple_repeat 2 178 0 2 1458 238 171 0 0 chr12 114513542 114513583 -6743947 + (CAGCT)n Simple_repeat Simple_repeat 4 44 0 2 1458 203 204 19 0 chr12 114513598 114513652 -6743878 + (CAGCC)n Simple_repeat Simple_repeat 5 59 0 2 1458 222 323 0 0 chr12 114513672 114513737 -6743793 + (CAGTC)n Simple_repeat Simple_repeat 5 69 0 2 1458 324 286 0 0 chr12 114513737 114513905 -6743625 + (CAGCT)n Simple_repeat Simple_repeat 5 172 0 2 1458 321 357 0 0 chr12 114513913 114514042 -6743488 + (CAGTC)n Simple_repeat Simple_repeat 2 130 0 2 1458 465 258 0 0 chr12 114514044 114514207 -6743323 + (CAGCC)n Simple_repeat Simple_repeat 3 165 0 3 1458 401 279 7 4 chr12 114514236 114514514 -6743016 + (CAGCC)n Simple_repeat Simple_repeat 1 279 0 3 1458 401 257 6 0 chr12 114514538 114514717 -6742813 + (CAGCC)n Simple_repeat Simple_repeat 1 180 0 3 1458 243 290 0 0 chr12 114514723 114514785 -6742745 + (CAGCT)n Simple_repeat Simple_repeat 2 63 0 3 1458 491 235 6 0 chr12 114514786 114514952 -6742578 + (CAGCC)n Simple_repeat Simple_repeat 5 171 0 3 1458 210 324 0 4 chr12 114514982 114515245 -6742285 + (CAGCC)n Simple_repeat Simple_repeat 1 261 0 3 1458 380 219 8 15 chr12 114518262 114518392 -6739138 + Lx4A LINE L1 6928 7056 -2 3 1458 752 294 27 0 chr12 114519794 114519978 -6737552 - ID_B1 SINE B4 -34 190 2 3 1458 22 0 0 0 chr12 114520102 114520124 -6737406 + AT_rich Low_complexity Low_complexity 1 22 0 3 1458 405 312 75 6 chr12 114521109 114521270 -6736260 + MLT1B-int LTR MaLR 1185 1356 -15 3 1458 630 291 60 0 chr12 114521287 114521521 -6736009 + MLT1B LTR MaLR 4 251 -139 3 1458 447 19 0 0 chr12 114521998 114522050 -6735480 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1458 825 30 0 0 chr12 114522051 114522151 -6735379 + (GA)n Simple_repeat Simple_repeat 1 100 0 3 1458 1011 161 0 0 chr12 114522256 114522436 -6735094 + CT-rich Low_complexity Low_complexity 1 180 0 3 1458 528 16 0 0 chr12 114522436 114522497 -6735033 + (TTTC)n Simple_repeat Simple_repeat 4 64 0 4 1458 695 278 5 35 chr12 114527314 114527512 -6730018 - B3 SINE B2 -24 192 1 4 1458 3575 15 5 0 chr12 114535699 114536093 -6721437 - MTA_Mm LTR MaLR 0 396 1 4 1458 9298 38 4 1 chr12 114536093 114537188 -6720342 - MTA_Mm-int LTR MaLR 0 1098 1 4 1458 3552 18 5 0 chr12 114537188 114537582 -6719948 - MTA_Mm LTR MaLR 0 396 1 4 1458 273 281 206 7 chr12 114538083 114538219 -6719311 + RSINE1 SINE B4 3 165 0 4 1458 198 115 38 19 chr12 114538441 114538494 -6719036 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1458 324 0 0 0 chr12 114538526 114538562 -6718968 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1458 201 192 33 16 chr12 114538593 114538715 -6718815 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 1458 400 274 181 12 chr12 114539033 114539199 -6718331 + MTE2a LTR MaLR 185 378 -1 4 1458 400 268 98 22 chr12 114540296 114540485 -6717045 + MLT1B-int LTR MaLR 1168 1409 0 4 1458 648 289 57 4 chr12 114540487 114540734 -6716796 + MLT1B LTR MaLR 4 263 -127 4 1458 240 143 0 0 chr12 114541258 114541300 -6716230 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1458 213 39 0 0 chr12 114541310 114541336 -6716194 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1458 595 260 102 20 chr12 114546316 114546512 -6711018 - B3 SINE B2 -4 212 1 5 1458 702 193 66 7 chr12 114555473 114555624 -6701906 + URR1A DNA MER1_type 67 226 0 5 182 339 194 0 28 chr12 114556855 114556961 -6700569 + (TA)n Simple_repeat Simple_repeat 2 104 0 5 1459 345 267 42 33 chr12 114557062 114557182 -6700348 - L1MC3 LINE L1 -1139 6646 6526 5 1459 225 94 0 0 chr12 114557315 114557347 -6700183 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1459 310 287 95 11 chr12 114557399 114557494 -6700036 + L1MCa LINE L1 1901 2003 -4505 5 1459 339 252 235 29 chr12 114558636 114558738 -6698792 + RSINE1 SINE B4 3 125 -40 5 1459 192 125 0 0 chr12 114558769 114558801 -6698729 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1459 189 203 136 30 chr12 114559114 114559180 -6698350 - L4 LINE RTE -1660 369 297 5 1459 526 284 28 7 chr12 114559772 114559914 -6697616 + B3A SINE B2 1 145 -53 6 1459 1221 78 0 0 chr12 114559920 114560086 -6697444 + (CA)n Simple_repeat Simple_repeat 2 167 0 6 1459 202 128 0 25 chr12 114560147 114560187 -6697343 + T-rich Low_complexity Low_complexity 6 44 0 6 1459 493 247 246 5 chr12 114560394 114560581 -6696949 + MTE-int LTR MaLR 197 428 -1152 6 1459 228 208 30 0 chr12 114560673 114560774 -6696756 + (TG)n Simple_repeat Simple_repeat 1 104 0 6 1459 530 131 47 12 chr12 114560785 114560955 -6696575 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 1459 432 245 63 45 chr12 114560994 114561105 -6696425 - RSINE1 SINE B4 0 165 53 6 1459 304 282 266 13 chr12 114561324 114561482 -6696048 + MTE2b LTR MaLR 181 378 -1 6 1459 290 291 90 9 chr12 114562273 114562384 -6695146 + MER67B LTR ERV1 361 480 -181 6 1459 353 266 72 60 chr12 114562600 114562763 -6694767 + MLT1B-int LTR MaLR 1190 1376 -33 6 1459 769 257 116 14 chr12 114562763 114563055 -6694475 + MLT1B LTR MaLR 4 325 -65 6 1459 189 0 0 0 chr12 114565882 114565903 -6691627 + (GGCTG)n Simple_repeat Simple_repeat 4 24 0 6 1459 317 170 0 19 chr12 114566459 114566513 -6691017 - HAL1-3A_ME LINE L1 -830 2028 1976 7 1459 2237 227 29 33 chr12 114579587 114580101 -6677429 - RLTR18B LTR ERVK 0 512 1 7 1459 289 149 88 168 chr12 114580824 114580851 -6676679 + ORR1A3 LTR MaLR 2 25 -369 7 1459 2062 161 31 0 chr12 114580851 114581200 -6676330 + Lx2A1 LINE L1 6649 7008 0 7 1459 289 149 88 168 chr12 114581200 114581285 -6676245 + ORR1A3 LTR MaLR 26 105 -289 7 1459 2183 207 82 114 chr12 114581288 114581910 -6675620 + RMER19C LTR ERVK 10 611 0 7 1459 1503 189 18 11 chr12 114581910 114582194 -6675336 + ORR1A3 LTR MaLR 93 378 0 7 1459 2396 189 34 0 chr12 114582194 114582666 -6674864 + ORR1A3-int LTR MaLR 1 488 -1021 7 1459 3022 89 7 12 chr12 114582669 114583089 -6674441 + BGLII LTR ERVK 4 421 0 7 1459 656 194 84 80 chr12 114583136 114583589 -6673941 + RMER3D-int LTR ERVK 466 1080 -6326 7 1459 290 29 176 0 chr12 114583589 114583657 -6673873 + GA-rich Low_complexity Low_complexity 1 80 0 7 1459 401 100 98 24 chr12 114583679 114583761 -6673769 + RMER3D-int LTR ERVK 461 548 -2294 7 1459 30970 66 2 1 chr12 114583761 114587952 -6669578 + L1Md_F2 LINE L1 1391 5586 -297 7 1459 8483 36 0 5 chr12 114587952 114588953 -6668577 + L1Md_F2 LINE L1 5587 6582 0 7 1459 3836 130 54 13 chr12 114588954 114589584 -6667946 + ORR1A3-int LTR MaLR 1308 1963 0 7 1459 2356 107 0 6 chr12 114589584 114589912 -6667618 + ORR1A3 LTR MaLR 1 326 0 7 1459 1972 142 7 7 chr12 114589912 114590217 -6667313 + RLTR14 LTR ERV1 78 382 0 8 1459 578 340 28 9 chr12 114590243 114590454 -6667076 + ID_B1 SINE B4 10 224 0 8 1459 428 70 0 0 chr12 114590752 114590809 -6666721 + ORR1A2 LTR MaLR 1 57 -270 8 1459 7205 86 18 2 chr12 114590809 114592304 -6665226 + L1_Mus3 LINE L1 5083 6593 -45 8 1459 1724 162 53 5 chr12 114592304 114592609 -6664921 + ORR1A2 LTR MaLR 39 370 -8 8 1459 1861 167 18 21 chr12 114592697 114593033 -6664497 + MTB_Mm LTR MaLR 1 335 -72 8 1459 270 292 52 26 chr12 114594100 114594216 -6663314 + MLT1-int LTR MaLR 1195 1313 -58 8 1459 545 224 0 6 chr12 114594220 114594377 -6663153 + (TG)n Simple_repeat Simple_repeat 1 156 0 8 1459 699 12 0 0 chr12 114599833 114599913 -6657617 + (TC)n Simple_repeat Simple_repeat 2 81 0 8 1459 2006 209 8 3 chr12 114605818 114606187 -6651343 - ORR1D1 LTR MaLR -1 373 3 8 1459 2983 237 50 9 chr12 114606188 114606853 -6650677 - ORR1D1-int LTR MaLR -18 1352 661 8 1459 367 123 0 34 chr12 114606858 114606917 -6650613 - ORR1D1-int LTR MaLR -1313 57 1 8 1459 2135 184 22 8 chr12 114606919 114607286 -6650244 - ORR1D1 LTR MaLR -2 372 1 8 1459 2013 209 77 12 chr12 114610852 114611347 -6646183 + Lx7 LINE L1 5648 6174 -1522 8 1459 228 209 0 0 chr12 114611355 114611398 -6646132 + L1_Mur3 LINE L1 41 83 -7629 9 1459 317 222 169 57 chr12 114611398 114611522 -6646008 - RLTR14 LTR ERV1 0 382 245 9 1459 1645 224 24 0 chr12 114611548 114611883 -6645647 - Lx7 LINE L1 -13 7447 7105 9 1459 303 270 0 0 chr12 114611883 114611946 -6645584 - Lx5 LINE L1 -214 6836 6774 9 1459 394 147 0 56 chr12 114611944 114612016 -6645514 - Lx6 LINE L1 -1093 6367 6300 9 1459 6224 208 60 29 chr12 114612025 114612402 -6645128 - Lx7 LINE L1 -1527 6169 5785 9 1459 4005 50 6 8 chr12 114612402 114612906 -6644624 - L1Md_F2 LINE L1 0 6582 6080 9 1459 6224 163 56 19 chr12 114612906 114613992 -6643538 - Lx7 LINE L1 -96 5784 4659 9 1459 2016 139 31 6 chr12 114614022 114614348 -6643182 - Lx4A LINE L1 -3 7055 6722 9 1459 19171 104 31 61 chr12 114614348 114617625 -6639905 - L1_Mur2 LINE L1 -562 5315 2137 9 1459 183 250 0 0 chr12 114618554 114618594 -6638936 + L2a LINE L2 3378 3417 -9 9 1459 5568 107 34 6 chr12 114619877 114620853 -6636677 - L1_Mur2 LINE L1 -3723 2154 1148 9 1459 186 43 0 0 chr12 114620892 114620915 -6636615 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 1459 24 32 0 0 chr12 114620927 114620958 -6636572 + AT_rich Low_complexity Low_complexity 1 31 0 1 1459 32004 58 1 1 chr12 114620975 114625738 -6631792 - L1Md_F2 LINE L1 -2 6580 1822 1 1459 4000 172 20 34 chr12 114625740 114626575 -6630955 - L1Md_F2 LINE L1 -5481 1243 420 1 1459 2888 85 5 20 chr12 114626575 114626972 -6630558 - L1_Mus1 LINE L1 -17 6550 6160 1 1459 596 240 22 0 chr12 114626972 114627152 -6630378 - L1_Mur2 LINE L1 -6034 1052 869 9 1459 11480 162 28 8 chr12 114627668 114628447 -6629083 + L1_Mur1 LINE L1 1263 2051 -3826 1 1459 455 48 16 0 chr12 114628447 114628509 -6629021 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1459 11480 160 28 8 chr12 114628509 114629899 -6627631 + L1_Mur1 LINE L1 2052 3476 -2401 1 1459 23836 156 26 20 chr12 114629900 114631174 -6626356 + Lx2A LINE L1 1515 2793 -3093 1 1459 651 26 0 0 chr12 114631174 114631251 -6626279 + (CAA)n Simple_repeat Simple_repeat 1 77 0 1 1459 23836 143 25 16 chr12 114631251 114634993 -6622537 + Lx2A LINE L1 2794 6560 -448 1 1459 225 0 0 0 chr12 114635965 114635990 -6621540 + (CCA)n Simple_repeat Simple_repeat 1 25 0 1 1459 2704 115 2 99 chr12 114636005 114636508 -6621022 + Lx2A LINE L1 6554 7007 -1 1 1459 9059 181 151 14 chr12 114636522 114637172 -6620358 + Lx5 LINE L1 3461 4395 -1482 1 1459 3810 95 68 2 chr12 114637172 114637712 -6619818 + Lx LINE L1 6076 6651 -3 1 1459 9059 181 151 14 chr12 114637712 114637936 -6619594 + Lx5 LINE L1 4396 4627 -1250 1 1459 3538 29 5 5 chr12 114637936 114638356 -6619174 + L1Md_F2 LINE L1 6163 6582 0 1 1459 9059 174 88 21 chr12 114638356 114640722 -6616808 + Lx5 LINE L1 4628 7041 -9 1 1459 602 113 10 0 chr12 114641401 114641498 -6616032 + (GGGGA)n Simple_repeat Simple_repeat 5 102 0 1 1459 2323 177 19 7 chr12 114642807 114643223 -6614307 - MTC LTR MaLR 0 421 1 1 1459 256 341 0 0 chr12 114644252 114644337 -6613193 - MLT1A0 LTR MaLR 0 365 281 1 1459 226 320 77 0 chr12 114644428 114644506 -6613024 - MLT1A0 LTR MaLR -193 172 89 1 1459 1915 175 29 31 chr12 114644765 114645149 -6612381 - ORR1C2 LTR MaLR -1 383 1 1 1459 243 0 0 0 chr12 114645440 114645467 -6612063 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1459 270 273 0 0 chr12 114647136 114647191 -6610339 + B3 SINE B2 74 128 -88 1 1459 306 194 0 0 chr12 114647199 114647261 -6610269 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 1 1459 315 0 0 0 chr12 114647267 114647302 -6610228 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1459 230 324 39 10 chr12 114647411 114647514 -6610016 + Tigger7 DNA MER2_type 162 267 -2224 1 1459 261 240 151 19 chr12 114648052 114648158 -6609372 - L1MEg LINE L1 -5420 1617 1505 1 1459 1146 325 107 30 chr12 114649765 114650333 -6607197 + RMER15-int LTR ERVL 154 765 -4234 1 1459 2908 290 110 52 chr12 114650883 114651272 -6606258 + RMER15-int LTR ERVL 3689 4092 -907 1 1459 386 38 0 19 chr12 114651272 114651325 -6606205 + (CAA)n Simple_repeat Simple_repeat 2 53 0 1 1459 2908 290 110 52 chr12 114651325 114651638 -6605892 + RMER15-int LTR ERVL 4093 4414 -585 1 1459 1263 94 0 0 chr12 114651638 114651818 -6605712 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 1 1459 2908 290 110 52 chr12 114651818 114652338 -6605192 + RMER15-int LTR ERVL 4415 4982 -17 1 1459 270 0 0 0 chr12 114653241 114653271 -6604259 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1459 594 0 0 0 chr12 114653271 114653336 -6604194 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1459 369 300 99 13 chr12 114655127 114655279 -6602251 - MLT1C LTR MaLR 0 467 303 1 1459 286 275 90 14 chr12 114655518 114655633 -6601897 + MLT1C LTR MaLR 295 452 -15 1 1459 709 167 0 13 chr12 114656497 114656649 -6600881 + CT-rich Low_complexity Low_complexity 6 155 0 1 1459 549 0 0 0 chr12 114657981 114658042 -6599488 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1459 380 340 13 0 chr12 114658568 114658727 -6598803 + (TATG)n Simple_repeat Simple_repeat 1 161 0 1 1459 22 35 0 0 chr12 114658965 114658994 -6598536 + AT_rich Low_complexity Low_complexity 1 29 0 1 1459 296 320 5 53 chr12 114661637 114661825 -6595705 + (CAGCT)n Simple_repeat Simple_repeat 2 180 0 1 1459 243 350 6 40 chr12 114661790 114661963 -6595567 + (CAGTT)n Simple_repeat Simple_repeat 1 167 0 1 1459 388 322 0 53 chr12 114661887 114662074 -6595456 + (CAGCC)n Simple_repeat Simple_repeat 2 178 0 1 1459 465 318 6 11 chr12 114662066 114662288 -6595242 + (CAGCC)n Simple_repeat Simple_repeat 1 220 0 1 1459 1383 133 3 1 chr12 114662349 114663763 -6593767 + (CAGCT)n Simple_repeat Simple_repeat 1 1416 0 1 1459 328 326 28 6 chr12 114663765 114664000 -6593530 + (CAGCT)n Simple_repeat Simple_repeat 1 240 0 1 1459 231 167 20 20 chr12 114668342 114668391 -6589139 + B1F SINE Alu 99 147 -2 1 1459 1025 164 113 10 chr12 114670280 114670483 -6587047 - MTD LTR MaLR 0 419 196 1 1459 537 80 0 0 chr12 114670493 114670568 -6586962 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 1 1459 4924 171 31 8 chr12 114670577 114671424 -6586106 - Lx5 LINE L1 -3 7047 6182 1 1459 2925 126 2 5 chr12 114671432 114671862 -6585668 + RMER12 LTR ERVK 1 429 -893 1 1459 1143 114 0 6 chr12 114671862 114672030 -6585500 + Lx5 LINE L1 5785 5951 -1099 1 1459 581 314 86 15 chr12 114672031 114672228 -6585302 - MTD LTR MaLR -208 211 1 1 1459 2544 194 48 34 chr12 114672878 114673438 -6584092 - RLTR12A LTR ERVK 0 568 1 1 1459 3801 241 78 12 chr12 114673772 114674709 -6582821 + Lx8 LINE L1 6366 7364 -109 1 1459 1284 221 86 14 chr12 114674686 114675103 -6582427 + L1_Mur3 LINE L1 1246 1692 -4188 1 1459 1435 205 141 55 chr12 114675103 114675536 -6581994 - RMER19A LTR ERVK 0 737 268 1 1459 1307 198 158 9 chr12 114676714 114676875 -6580655 - ORR1C2 LTR MaLR -7 377 191 1 1459 648 0 0 0 chr12 114676875 114676947 -6580583 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 1459 1307 198 158 9 chr12 114676947 114677101 -6580429 - ORR1C2 LTR MaLR -194 190 16 1 1459 517 315 107 29 chr12 114677193 114677435 -6580095 - MT2A LTR ERVL -105 428 168 1 1459 775 296 0 5 chr12 114677422 114677619 -6579911 - MTE-int LTR MaLR -562 1018 823 1 1459 6485 48 8 0 chr12 114677670 114678462 -6579068 - L1Md_F2 LINE L1 -2 6580 5783 1 1459 17893 41 1 1 chr12 114678462 114681337 -6576193 - L1Md_T LINE L1 -7 6575 3700 1 1459 10487 50 3 1 chr12 114681333 114683301 -6574229 - L1Md_F2 LINE L1 -12 6570 4598 1 1459 910 277 74 24 chr12 114683616 114683912 -6573618 - MER21B LTR ERV1 -397 466 156 1 1459 1473 241 68 48 chr12 114684318 114684715 -6572815 - MTD LTR MaLR -4 415 11 1 1459 1031 99 0 36 chr12 114684824 114684992 -6572538 - L1Md_F2 LINE L1 -2 6580 6419 1 1459 775 115 8 8 chr12 114685245 114685376 -6572154 + (GGAA)n Simple_repeat Simple_repeat 1 131 0 1 1459 216 182 0 0 chr12 114685643 114685687 -6571843 + CT-rich Low_complexity Low_complexity 2 45 0 1 1459 189 74 0 0 chr12 114685705 114685732 -6571798 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1 1459 351 0 0 0 chr12 114686167 114686206 -6571324 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1459 1170 40 0 0 chr12 114686206 114686357 -6571173 + (GA)n Simple_repeat Simple_repeat 2 153 0 1 1459 801 181 17 0 chr12 114686586 114686763 -6570767 + CT-rich Low_complexity Low_complexity 1 180 0 1 1459 252 0 0 0 chr12 114686765 114686793 -6570737 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1 1459 211 275 349 0 chr12 114686794 114686903 -6570627 - B1_Mus2 SINE Alu 0 147 1 1 1459 308 281 4 0 chr12 114687125 114687373 -6570157 + (TG)n Simple_repeat Simple_repeat 1 249 0 1 1460 211 351 27 0 chr12 114690279 114690353 -6567177 + ID4 SINE ID 2 77 -6 1 1460 489 127 0 0 chr12 114690851 114690930 -6566600 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1460 322 256 11 22 chr12 114691595 114691715 -6565815 + CT-rich Low_complexity Low_complexity 58 178 0 1 1460 1327 45 6 6 chr12 114691715 114691895 -6565635 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1460 322 256 11 22 chr12 114691895 114691954 -6565576 + polypyrimidine Low_complexity Low_complexity 2 57 0 1 1460 847 120 28 6 chr12 114691931 114692107 -6565423 + CT-rich Low_complexity Low_complexity 1 180 0 1 1460 457 220 16 56 chr12 114692122 114692247 -6565283 - PB1D9 SINE Alu 0 120 1 1 1460 288 248 0 0 chr12 114692472 114692573 -6564957 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1460 2303 109 65 123 chr12 114693929 114694433 -6563097 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1460 318 148 0 0 chr12 114696916 114696970 -6560560 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1460 211 351 27 0 chr12 114700798 114700872 -6556658 + ID4 SINE ID 2 77 -6 1 1460 345 100 0 0 chr12 114701580 114701630 -6555900 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 1 1460 232 368 0 0 chr12 114705449 114705525 -6552005 + ID4_ SINE ID 2 77 -6 1 1460 339 130 0 0 chr12 114706242 114706296 -6551234 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1460 2637 44 6 3 chr12 114709917 114710238 -6547292 + RLTRETN_Mm LTR ERVK 1 322 0 1 1460 213 351 27 0 chr12 114710450 114710524 -6547006 + ID2 SINE ID 2 77 -6 1 1460 444 118 0 0 chr12 114711241 114711309 -6546221 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1460 689 79 10 0 chr12 114712004 114712105 -6545425 + (TC)n Simple_repeat Simple_repeat 2 103 0 1 1460 789 157 12 6 chr12 114712103 114712276 -6545254 + CT-rich Low_complexity Low_complexity 4 177 0 1 1460 406 265 6 24 chr12 114712278 114712404 -6545126 - B1_Mus2 SINE Alu 0 120 1 1 1460 309 231 40 99 chr12 114712325 114712426 -6545104 - MT2B LTR ERVL -365 236 142 1 1460 489 198 0 0 chr12 114712619 114712740 -6544790 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 1460 228 244 46 115 chr12 114715190 114715320 -6542210 + MTA_Mm LTR MaLR 212 332 -64 1 1460 714 12 0 0 chr12 114715640 114715723 -6541807 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1460 186 43 0 0 chr12 114715723 114715745 -6541785 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1460 2748 222 52 108 chr12 114715843 114716749 -6540781 + RLTR13A LTR ERVK 1 855 0 1 1460 913 141 0 17 chr12 114717348 114717528 -6540002 + CT-rich Low_complexity Low_complexity 4 180 0 1 1460 487 229 16 63 chr12 114717565 114717691 -6539839 - PB1D9 SINE Alu 0 120 1 1 1460 264 244 0 0 chr12 114717918 114718008 -6539522 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1460 639 82 0 67 chr12 114723218 114723322 -6534208 - L1_Mus4 LINE L1 -216 6420 6324 1 1460 611 120 0 17 chr12 114723322 114723441 -6534089 + L1_Mus4 LINE L1 6516 6632 -4 1 1460 661 244 15 0 chr12 114724131 114724262 -6533268 + ETnERV2-int LTR ERVK 7070 7202 -204 1 1460 425 213 29 12 chr12 114725399 114725570 -6531960 + CT-rich Low_complexity Low_complexity 1 174 0 1 1460 2700 98 3 5 chr12 114726185 114726563 -6530967 + L1_Mus2 LINE L1 6188 6564 -2 1 1460 480 35 0 0 chr12 114726573 114726631 -6530899 + (TAA)n Simple_repeat Simple_repeat 1 58 0 1 1460 396 0 0 0 chr12 114731251 114731295 -6526235 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1460 580 213 0 0 chr12 114731582 114731704 -6525826 + L1Md_F2 LINE L1 305 426 -6190 2 1460 37250 54 2 6 chr12 114731703 114736859 -6520671 + L1Md_F2 LINE L1 929 6052 -530 2 1460 3327 66 9 5 chr12 114736856 114737282 -6520248 - L1Md_F2 LINE L1 -36 6546 6119 2 1460 1156 59 0 7 chr12 114737309 114737455 -6520075 + L1_Mm LINE L1 3700 3845 -2038 2 1460 1774 44 22 0 chr12 114737455 114737680 -6519850 + L1Md_F3 LINE L1 6353 6582 -2 2 1460 198 0 0 0 chr12 114737864 114737886 -6519644 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1460 34880 84 12 12 chr12 114737893 114744046 -6513484 - L1Md_F2 LINE L1 -14 6568 421 2 1460 649 261 120 6 chr12 114744783 114745005 -6512525 - MTD LTR MaLR -5 416 162 2 1460 9644 116 35 17 chr12 114745217 114745713 -6511817 - L1_Mus1 LINE L1 -642 5925 5430 2 1460 4629 76 26 0 chr12 114745713 114746331 -6511199 + L1_Mus1 LINE L1 5933 6566 -1 2 1460 9644 219 110 52 chr12 114746331 114748254 -6509276 - L1_Mus1 LINE L1 -454 5429 3308 2 1460 262 0 0 50 chr12 114748254 114748294 -6509236 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1460 9644 219 110 52 chr12 114748294 114749522 -6508008 - L1_Mus1 LINE L1 -2576 3307 2070 2 1460 842 217 40 71 chr12 114749529 114749782 -6507748 - L1VL4 LINE L1 -5804 498 254 2 1460 564 193 0 43 chr12 114749790 114749931 -6507599 - ORR1B1-int LTR MaLR -1186 323 189 2 1460 331 306 9 18 chr12 114749989 114750099 -6507431 - MT2A LTR ERVL -193 340 232 2 1460 688 291 0 5 chr12 114750138 114750328 -6507202 - MTE2b-int LTR MaLR -562 1018 830 2 1460 1264 273 34 10 chr12 114750431 114750819 -6506711 - MTE2b-int LTR MaLR -1179 401 5 2 1460 717 281 12 0 chr12 114750822 114750993 -6506537 - MTE2b LTR MaLR 0 379 207 2 1460 1448 103 9 13 chr12 114751261 114751486 -6506044 + RLTR13D1 LTR ERVK 1 224 -582 2 1460 710 191 23 29 chr12 114751486 114751659 -6505871 - RLTRETN_Mm LTR ERVK 0 322 151 2 1460 2976 107 14 8 chr12 114751671 114752162 -6505368 + RLTR22_Mur LTR ERVK 864 1357 -491 2 1460 3189 63 2 2 chr12 114752162 114752558 -6504972 - MTA_Mm LTR MaLR 0 396 1 2 1460 4075 139 74 83 chr12 114752558 114754117 -6503413 - MTA_Mm-int LTR MaLR -426 1366 1 2 1460 2733 57 27 0 chr12 114754118 114754454 -6503076 - MTA_Mm LTR MaLR -1 345 1 2 1460 3233 99 11 44 chr12 114754462 114755013 -6502517 + RLTR22_Mus LTR ERVK 1276 1808 0 2 1460 310 356 74 6 chr12 114755132 114755307 -6502223 - MER21B LTR ERV1 -157 706 520 2 1460 765 274 78 27 chr12 114755329 114755625 -6501905 - MER21B LTR ERV1 -397 466 156 2 1460 1442 234 67 26 chr12 114756050 114756436 -6501094 - MTD LTR MaLR -4 415 14 2 1460 25420 104 9 6 chr12 114756786 114760559 -6496971 + L1_Mus1 LINE L1 2165 5941 -626 2 1460 261 0 0 0 chr12 114760559 114760588 -6496942 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1460 7358 73 24 0 chr12 114760588 114761207 -6496323 + L1_Mus1 LINE L1 5942 6565 -2 2 1460 189 121 0 0 chr12 114761228 114761261 -6496269 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1460 249 83 0 0 chr12 114761503 114761539 -6495991 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1460 864 77 0 0 chr12 114762215 114762332 -6495198 + (GGAA)n Simple_repeat Simple_repeat 1 117 0 2 1460 604 36 0 24 chr12 114762588 114762673 -6494857 + (TCCC)n Simple_repeat Simple_repeat 3 85 0 2 1460 203 55 0 53 chr12 114762681 114762719 -6494811 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 2 1460 672 77 0 0 chr12 114763362 114763453 -6494077 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1460 556 163 21 28 chr12 114763668 114763813 -6493717 + T-rich Low_complexity Low_complexity 3 146 0 2 1460 377 277 0 56 chr12 114763818 114763944 -6493586 - PB1D9 SINE Alu -1 119 1 2 1460 495 318 0 0 chr12 114764155 114764414 -6493116 + (TG)n Simple_repeat Simple_repeat 1 259 0 2 1460 447 19 0 0 chr12 114764665 114764717 -6492813 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1460 297 0 0 0 chr12 114766399 114766432 -6491098 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 1460 198 0 0 0 chr12 114768000 114768022 -6489508 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1460 1917 134 3 0 chr12 114768023 114768330 -6489200 + ORR1A2 LTR MaLR 5 312 -15 2 1460 9129 154 61 28 chr12 114768335 114770215 -6487315 + ORR1A2-int LTR MaLR 19 1960 -3 2 1460 2216 123 6 6 chr12 114770218 114770545 -6486985 + ORR1A2 LTR MaLR 1 327 0 2 1460 954 122 0 0 chr12 114771612 114771760 -6485770 + (TTTC)n Simple_repeat Simple_repeat 3 150 0 2 1460 2545 88 2 0 chr12 114771910 114772472 -6485058 + L1VL4 LINE L1 621 1183 -2376 2 1460 855 266 67 30 chr12 114772481 114772810 -6484720 + L1_Mus3 LINE L1 220 701 -5933 2 1460 28199 136 20 13 chr12 114772813 114779062 -6478468 + L1_Mus3 LINE L1 332 6632 -6 2 1460 3200 86 4 16 chr12 114779089 114779575 -6477955 - MusHAL1 LINE L1 -1702 1010 531 2 1460 439 229 23 6 chr12 114780319 114780490 -6477040 + CT-rich Low_complexity Low_complexity 1 174 0 2 1460 180 0 0 0 chr12 114781791 114781811 -6475719 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1460 503 132 11 0 chr12 114785287 114785378 -6472152 + (TC)n Simple_repeat Simple_repeat 1 92 0 2 1460 697 22 22 0 chr12 114785379 114785470 -6472060 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 2 1460 504 0 0 0 chr12 114786254 114786310 -6471220 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1460 754 265 143 5 chr12 114787529 114787753 -6469777 - MTD LTR MaLR -5 414 160 2 1460 9780 165 6 10 chr12 114788170 114790063 -6467467 - Lx LINE L1 -650 6004 4114 2 1460 9386 54 5 10 chr12 114790508 114792399 -6465131 - L1Md_F2 LINE L1 -1 6581 4704 2 1460 1141 212 4 0 chr12 114792370 114792601 -6464929 - Lx LINE L1 -1766 4117 3886 2 1460 682 280 59 20 chr12 114793122 114793326 -6464204 + MTE2b LTR MaLR 1 212 -167 2 1460 5889 107 10 10 chr12 114793543 114794349 -6463181 - RLTR13D1 LTR ERVK 0 806 1 2 1460 775 281 12 0 chr12 114794616 114794787 -6462743 + MTE2b LTR MaLR 207 379 0 2 1460 1464 271 34 10 chr12 114794790 114795178 -6462352 + MTE2b-int LTR MaLR 5 401 -1179 2 1460 311 271 12 12 chr12 114795281 114795367 -6462163 + MTE2b-int LTR MaLR 830 915 -665 2 1460 10806 109 12 84 chr12 114795662 114795881 -6461649 + RLTR22_Mur LTR ERVK 1 205 -1643 2 1460 4773 48 2 33 chr12 114795881 114796459 -6461071 - LTRIS2 LTR ERV1 0 564 5 2 1460 10806 109 12 84 chr12 114796459 114798209 -6459321 + RLTR22_Mur LTR ERVK 206 1828 -20 2 1460 6445 67 0 0 chr12 114798210 114798981 -6458549 + L1Md_T LINE L1 5812 6582 0 2 1460 13577 129 13 29 chr12 114799002 114799609 -6457921 + L1Md_T LINE L1 3377 3958 -1925 2 1460 1018 106 7 66 chr12 114799609 114799761 -6457769 + B1_Mus2 SINE Alu 5 147 0 2 1460 13577 129 13 29 chr12 114799761 114801399 -6456131 + L1Md_T LINE L1 3959 5586 -297 2 1460 9142 27 0 0 chr12 114801399 114802395 -6455135 + L1Md_T LINE L1 5587 6582 0 2 1460 2454 90 23 6 chr12 114802397 114802743 -6454787 + L1_Mus3 LINE L1 6279 6630 -8 2 1460 378 0 0 0 chr12 114803885 114803927 -6453603 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1460 4272 109 133 38 chr12 114804097 114804395 -6453135 + RMER17A LTR ERVK 1 384 -367 2 1460 764 65 32 0 chr12 114804395 114804519 -6453011 + (TC)n Simple_repeat Simple_repeat 1 128 0 2 1460 4272 109 133 38 chr12 114804519 114804906 -6452624 + RMER17A LTR ERVK 385 751 0 2 1460 595 273 12 0 chr12 114805046 114805207 -6452323 - MTC LTR MaLR -1 420 258 2 1460 22 0 0 0 chr12 114805525 114805547 -6451983 + AT_rich Low_complexity Low_complexity 1 22 0 2 1460 4307 167 150 23 chr12 114806064 114806936 -6450594 + RLTR13C1 LTR ERVK 1 983 0 2 1460 19103 71 1 0 chr12 114807345 114809812 -6447718 + L1Md_F2 LINE L1 3119 5586 -297 2 1460 8525 49 1 9 chr12 114809812 114810816 -6446714 + L1Md_F2 LINE L1 5587 6582 0 2 1460 206 88 59 0 chr12 114811480 114811514 -6446016 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 2 1460 305 153 14 0 chr12 114814778 114814850 -6442680 + GA-rich Low_complexity Low_complexity 2 74 0 2 1460 8225 37 1 0 chr12 114814943 114815910 -6441620 - L1Md_A LINE L1 0 6582 5615 2 1460 1222 260 23 12 chr12 114816057 114816482 -6441048 - Lx2B LINE L1 -145 6855 6198 2 1460 549 191 17 0 chr12 114816469 114816584 -6440946 - Lx4B LINE L1 -615 6443 6327 2 1460 23 0 0 0 chr12 114817057 114817080 -6440450 + AT_rich Low_complexity Low_complexity 1 23 0 2 1460 384 308 75 0 chr12 114818320 114818466 -6439064 + Lx8 LINE L1 6962 7118 -355 2 182 5879 139 9 3 chr12 114818477 114819442 -6438088 + L1_Mm LINE L1 3179 4149 -1734 2 1461 5883 97 47 0 chr12 114819441 114821046 -6436484 - L1Md_F LINE L1 -3870 2013 331 2 1461 487 261 66 6 chr12 114821370 114821527 -6436003 + Lx8 LINE L1 6926 7118 -355 2 1461 9801 128 5 1 chr12 114821538 114823055 -6434475 + L1_Mm LINE L1 3179 4702 -1181 2 1461 21 71 0 0 chr12 114823090 114823132 -6434398 + AT_rich Low_complexity Low_complexity 1 42 0 2 1461 297 270 62 46 chr12 114823136 114823330 -6434200 + L1M2 LINE L1 5395 5591 -709 2 1461 1142 259 91 9 chr12 114823384 114823723 -6433807 + ORR1D1 LTR MaLR 4 370 -4 2 1461 243 190 0 0 chr12 114824639 114824697 -6432833 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1461 985 244 8 4 chr12 114824863 114825102 -6432428 + Lx5 LINE L1 6361 6600 -450 2 1461 1170 251 59 9 chr12 114825102 114825424 -6432106 + Lx5 LINE L1 6710 7047 -3 2 1461 22 35 0 0 chr12 114825452 114825481 -6432049 + AT_rich Low_complexity Low_complexity 1 29 0 2 1461 639 282 31 0 chr12 114825481 114825697 -6431833 - Lx3C LINE L1 -85 6973 6660 2 1461 977 244 9 0 chr12 114825701 114825914 -6431616 + Lx5 LINE L1 6419 6633 -417 2 1461 194 0 39 0 chr12 114825914 114825940 -6431590 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 2 1461 2426 155 5 25 chr12 114825940 114826343 -6431187 + L1_Mus4 LINE L1 6242 6636 0 2 1461 961 251 50 12 chr12 114826343 114826370 -6431160 + Lx4B LINE L1 6658 6692 -366 2 1461 441 0 0 0 chr12 114828128 114828177 -6429353 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1461 211 211 0 186 chr12 114828903 114828973 -6428557 - B1_Mus2 SINE Alu -7 140 84 2 1461 5368 139 57 30 chr12 114828984 114829866 -6427664 + RMER17A2 LTR ERVK 1 906 0 2 1461 369 214 0 0 chr12 114829868 114829938 -6427592 + RLTR21 LTR ERVK 6 75 -1497 2 1461 2543 218 57 41 chr12 114829941 114830706 -6426824 + RLTR21 LTR ERVK 436 1213 -359 2 1461 477 0 0 0 chr12 114830706 114830759 -6426771 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1461 2543 218 57 41 chr12 114830759 114830777 -6426753 + RLTR21 LTR ERVK 1214 1231 -341 2 1461 8476 40 2 1 chr12 114830865 114832195 -6425335 - L1Md_F2 LINE L1 -4 6578 5248 2 1461 369 0 0 0 chr12 114832385 114832426 -6425104 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1461 270 0 0 0 chr12 114832427 114832457 -6425073 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 1461 7633 52 5 5 chr12 114833572 114834530 -6423000 + RLTR13A2 LTR ERVK 1 958 0 2 1461 293 377 42 18 chr12 114834919 114835084 -6422446 + B4A SINE B4 55 223 -69 2 1461 669 225 22 0 chr12 114836857 114837057 -6420473 - Lx2B LINE L1 -324 5553 5324 2 1461 7977 201 52 12 chr12 114837043 114839388 -6418142 - Lx2B LINE L1 -651 6349 3915 2 1461 222 239 0 0 chr12 114839396 114839467 -6418063 + CT-rich Low_complexity Low_complexity 4 74 0 2 1461 2082 255 18 7 chr12 114839469 114840156 -6417374 - Lx4B LINE L1 -24 7034 6248 2 1461 723 182 20 0 chr12 114840161 114840309 -6417221 - Lx2B LINE L1 -4329 1548 1398 2 1461 508 313 50 57 chr12 114840313 114840689 -6416841 + RLTR17 LTR ERVK 34 511 -17 2 1461 287 0 53 0 chr12 114841048 114841086 -6416444 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 2 1461 1018 226 101 95 chr12 114841322 114841660 -6415870 - ORR1B1 LTR MaLR -14 380 41 3 1461 385 357 59 5 chr12 114842657 114842843 -6414687 - B3A SINE B2 -2 196 1 3 1461 667 249 17 0 chr12 114844739 114844920 -6412610 - L1_Mur2 LINE L1 -324 5553 5370 3 1461 6161 215 31 15 chr12 114844926 114846917 -6410613 - Lx2B LINE L1 -651 6349 4318 3 1461 510 149 48 32 chr12 114846917 114847042 -6410488 - Lx2B LINE L1 -4361 1516 1390 3 1461 339 356 67 54 chr12 114847094 114847391 -6410139 + RLTR17 LTR ERVK 125 425 -267 3 1461 289 330 0 18 chr12 114847797 114847911 -6409619 - L1_Mur2 LINE L1 -6371 341 230 3 1461 21 0 0 0 chr12 114847942 114847963 -6409567 + AT_rich Low_complexity Low_complexity 1 21 0 3 1461 893 255 48 110 chr12 114848026 114848361 -6409169 - ORR1A4 LTR MaLR -15 314 1 3 1461 513 0 0 0 chr12 114851037 114851094 -6406436 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1461 878 28 0 9 chr12 114851094 114851203 -6406327 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 1461 4977 139 65 8 chr12 114852012 114852869 -6404661 + RMER17A2 LTR ERVK 1 906 0 3 1461 353 229 0 0 chr12 114852871 114852941 -6404589 + RLTR21 LTR ERVK 6 75 -1497 3 1461 2453 207 57 37 chr12 114852944 114853616 -6403914 + RLTR21 LTR ERVK 436 1120 -452 3 1461 547 95 21 10 chr12 114853659 114853755 -6403775 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 3 1461 40 37 0 0 chr12 114853766 114853820 -6403710 + AT_rich Low_complexity Low_complexity 1 54 0 3 1461 685 221 0 13 chr12 114853840 114853996 -6403534 - MurERV4-int LTR ERVK -2344 2916 2763 3 1461 396 286 8 0 chr12 114854653 114854772 -6402758 + Lx8 LINE L1 6970 7089 -384 3 1461 1091 253 67 22 chr12 114854941 114855281 -6402249 - RMER17A LTR ERVK 0 889 470 3 1461 4452 80 11 20 chr12 114855281 114855918 -6401612 + L1Md_F2 LINE L1 5948 6578 -4 3 1461 771 281 57 78 chr12 114855918 114855963 -6401567 - RMER17A LTR ERVK -335 554 512 3 1461 205 205 0 0 chr12 114856217 114856256 -6401274 + A-rich Low_complexity Low_complexity 1 39 0 3 1461 1609 159 58 58 chr12 114856306 114856324 -6401206 - RMER17A LTR ERVK -561 328 315 3 1461 826 106 7 7 chr12 114856324 114856466 -6401064 + (GA)n Simple_repeat Simple_repeat 2 143 0 3 1461 1641 105 50 50 chr12 114856466 114856775 -6400755 - RMER17A LTR ERVK -575 314 1 3 1461 1764 215 25 13 chr12 114858075 114858470 -6399060 - Lx4B LINE L1 -90 6968 6569 3 1461 556 249 85 62 chr12 114858470 114858646 -6398884 - ORR1B1 LTR MaLR -174 220 41 3 1461 360 0 0 0 chr12 114858733 114858773 -6398757 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1461 1005 129 0 20 chr12 114859442 114859592 -6397938 - B1_Mus2 SINE Alu 0 147 1 3 1461 731 261 12 0 chr12 114860527 114860692 -6396838 - MTC LTR MaLR -1 420 254 3 1461 198 0 0 0 chr12 114861347 114861369 -6396161 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1461 1015 88 7 0 chr12 114861369 114861506 -6396024 - B1_Mm SINE Alu -9 138 1 3 1461 455 388 58 7 chr12 114862268 114862546 -6394984 + B4A SINE B4 1 292 0 3 1461 265 297 0 0 chr12 114862557 114862658 -6394872 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 3 1461 216 97 0 0 chr12 114862663 114862694 -6394836 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 3 1461 1879 259 25 7 chr12 114862990 114863582 -6393948 - Lx2B LINE L1 -25 6951 6330 3 1461 270 0 0 0 chr12 114864419 114864449 -6393081 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1461 675 235 18 1 chr12 114864941 114865138 -6392392 - L1_Mur2 LINE L1 -324 5553 5355 3 1461 2576 234 29 7 chr12 114865149 114866160 -6391370 - Lx2B LINE L1 -670 6330 5297 3 1461 870 185 14 26 chr12 114866160 114866362 -6391168 - B3 SINE B2 0 195 1 3 1461 260 213 58 84 chr12 114866504 114866658 -6390872 - L1MC5 LINE L1 -901 7060 6911 3 1461 3284 69 0 7 chr12 114866669 114867122 -6390408 + L1_Mus3 LINE L1 6024 6473 -165 3 1461 3517 101 130 0 chr12 114867122 114867677 -6389853 + RLTR33 LTR ERVK 52 678 0 3 1461 689 289 32 0 chr12 114867677 114867864 -6389666 - B3 SINE B2 -23 193 1 3 1461 206 269 0 0 chr12 114869183 114869235 -6388295 + (CCG)n Simple_repeat Simple_repeat 1 52 0 3 1461 5484 201 35 16 chr12 114869281 114870638 -6386892 - Lx2B LINE L1 -580 5297 3916 3 1461 2161 264 19 7 chr12 114870716 114871405 -6386125 - Lx4B LINE L1 -16 7042 6253 3 1461 630 220 20 0 chr12 114871417 114871567 -6385963 - Lx2B LINE L1 -4331 1546 1394 3 1461 339 321 62 82 chr12 114871568 114871928 -6385602 + RLTR17 LTR ERVK 32 428 -264 3 1461 1160 256 55 92 chr12 114872535 114872917 -6384613 - ORR1B1 LTR MaLR -14 380 14 3 1461 294 365 56 11 chr12 114873934 114874114 -6383416 - B3A SINE B2 -2 196 9 3 1461 6327 74 6 2 chr12 114874125 114874991 -6382539 - L1Md_F2 LINE L1 -51 6531 5663 3 1461 1410 168 11 0 chr12 114876215 114876495 -6381035 - L1_Mur2 LINE L1 -1651 4226 3944 3 1461 2121 234 32 51 chr12 114876498 114876871 -6380659 - L1_Mur2 LINE L1 -3363 2514 2146 3 1461 3641 82 0 6 chr12 114876871 114877352 -6380178 - L1Md_F2 LINE L1 -12 6570 6093 3 1461 2121 234 32 51 chr12 114877352 114877766 -6379764 - L1_Mur2 LINE L1 -3732 2145 1742 3 1461 2508 63 9 20 chr12 114877766 114878108 -6379422 - L1Md_F3 LINE L1 -4 6580 6243 3 1461 432 18 0 0 chr12 114878108 114878163 -6379367 - L1_Mm LINE L1 -391 5492 5438 3 1461 2380 106 138 9 chr12 114878163 114878584 -6378946 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1461 282 22 0 100 chr12 114878586 114878636 -6378894 + RLTR10-int LTR ERVK 3 47 -1940 3 1461 21121 53 2 2 chr12 114878643 114881491 -6376039 - L1_Mm LINE L1 -440 5443 2598 3 1461 323 224 88 52 chr12 114881480 114881673 -6375857 - L1_Mur2 LINE L1 -4193 1684 1485 3 1461 1070 77 19 0 chr12 114881686 114881841 -6375689 - L1Md_F3 LINE L1 0 6584 6427 3 1461 7138 82 11 1 chr12 114881841 114883154 -6374376 + L1Md_F2 LINE L1 4833 6161 -421 3 1461 1423 192 22 10 chr12 114883149 114883706 -6373824 - L1_Mur2 LINE L1 -4371 1506 941 3 1461 1812 102 14 4 chr12 114884051 114884326 -6373204 - L1_Mus2 LINE L1 -2 6564 6287 3 1461 902 225 47 50 chr12 114884326 114884674 -6372856 + RLTRETN_Mm LTR ERVK 54 393 0 3 1461 629 81 0 0 chr12 114884674 114884761 -6372769 - L1_Mus2 LINE L1 -251 6315 6229 3 1461 2803 90 2 9 chr12 114884757 114885182 -6372348 + L1_Mus2 LINE L1 5684 6105 -461 3 1461 430 194 0 85 chr12 114885210 114885328 -6372202 + Lx2B LINE L1 5950 6057 -943 3 1461 288 216 23 0 chr12 114885299 114885387 -6372143 + Lx4A LINE L1 6964 7053 -5 3 1461 381 43 0 0 chr12 114886609 114886656 -6370874 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1461 21 0 0 0 chr12 114886721 114886742 -6370788 + AT_rich Low_complexity Low_complexity 1 21 0 3 1461 2840 271 141 6 chr12 114886766 114887759 -6369771 - Lx5 LINE L1 -7 7043 5918 3 1461 286 294 33 33 chr12 114887984 114888167 -6369363 + L1M2 LINE L1 5403 5585 -715 3 1461 1052 269 95 9 chr12 114888227 114888565 -6368965 + ORR1D1 LTR MaLR 4 370 -4 3 1461 267 296 51 85 chr12 114889247 114889424 -6368106 + B4 SINE B4 48 218 -74 3 1461 570 109 0 0 chr12 114889474 114889566 -6367964 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1461 2035 264 33 80 chr12 114889733 114890454 -6367076 + Lx5 LINE L1 6361 7047 -3 3 1461 28 48 0 0 chr12 114890469 114890511 -6367019 + AT_rich Low_complexity Low_complexity 1 42 0 3 1461 585 303 14 0 chr12 114890511 114890727 -6366803 - Lx3C LINE L1 -85 6973 6660 3 1461 960 244 18 9 chr12 114890731 114890954 -6366576 + Lx5 LINE L1 6419 6643 -407 3 1461 2329 149 43 0 chr12 114890968 114891261 -6366269 + L1_Mus4 LINE L1 6243 6550 -86 3 1461 189 0 0 0 chr12 114891261 114891282 -6366248 + (AGGGGG)n Simple_repeat Simple_repeat 1 21 0 3 1461 2329 149 43 0 chr12 114891282 114891364 -6366166 + L1_Mus4 LINE L1 6551 6633 -3 3 1461 249 33 0 0 chr12 114893150 114893180 -6364350 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1461 5309 159 15 35 chr12 114894005 114894398 -6363132 + RMER17A2 LTR ERVK 3 382 -524 3 1461 633 61 0 0 chr12 114894398 114894480 -6363050 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1461 5309 159 15 35 chr12 114894480 114895008 -6362522 + RMER17A2 LTR ERVK 383 906 0 3 1461 339 229 0 0 chr12 114895010 114895080 -6362450 + RLTR21 LTR ERVK 6 75 -1497 3 1461 2332 232 54 62 chr12 114895083 114895894 -6361636 + RLTR21 LTR ERVK 436 1240 -332 3 1461 303 28 0 0 chr12 114895894 114895930 -6361600 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1461 519 17 0 0 chr12 114895929 114895989 -6361541 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1461 382 216 0 0 chr12 114896013 114896087 -6361443 - MurERV4_19-int LTR ERVK -2950 2830 2757 3 1461 8126 54 0 3 chr12 114896088 114897425 -6360105 - L1Md_F2 LINE L1 -3 6579 5248 3 1461 459 0 0 0 chr12 114897617 114897668 -6359862 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1461 522 0 0 0 chr12 114897668 114897725 -6359805 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1461 217 379 45 19 chr12 114899251 114899407 -6358123 + B4A SINE B4 64 223 -69 3 1461 792 227 17 0 chr12 114901180 114901356 -6356174 - L1_Mur2 LINE L1 -324 5553 5375 3 1461 8626 211 35 14 chr12 114901367 114903742 -6353788 - Lx2B LINE L1 -651 6349 3913 3 1461 248 324 0 0 chr12 114903746 114903820 -6353710 + CT-rich Low_complexity Low_complexity 3 76 0 3 1461 2155 294 22 15 chr12 114903823 114904199 -6353331 - Lx4B LINE L1 -23 7035 6566 3 1461 3694 20 2 0 chr12 114904199 114904594 -6352936 - MTA_Mm LTR MaLR 0 396 1 3 1461 10184 21 0 0 chr12 114904594 114905692 -6351838 - MTA_Mm-int LTR MaLR 0 1098 1 3 1461 3424 26 39 0 chr12 114905692 114906073 -6351457 - MTA_Mm LTR MaLR 0 396 1 3 1461 2155 254 9 17 chr12 114906073 114906380 -6351150 - Lx4B LINE L1 -493 6565 6259 3 1461 637 185 79 7 chr12 114906395 114906547 -6350983 - Lx2B LINE L1 -4330 1547 1385 3 1461 312 338 78 59 chr12 114906560 114906866 -6350664 + RLTR16 LTR ERVK 32 392 -300 3 1461 1105 259 54 91 chr12 114907523 114907876 -6349654 - ORR1B1 LTR MaLR -14 380 41 3 1461 279 310 94 50 chr12 114908921 114909101 -6348429 - B3A SINE B2 -2 196 9 3 1461 6810 72 6 2 chr12 114909112 114909978 -6347552 - L1Md_F2 LINE L1 -51 6531 5663 3 1461 1543 164 11 4 chr12 114911201 114911482 -6346048 - L1_Mur2 LINE L1 -1651 4226 3944 3 1461 2402 235 30 47 chr12 114911485 114911855 -6345675 - L1_Mur2 LINE L1 -3363 2514 2151 3 1461 3812 87 0 8 chr12 114911855 114912340 -6345190 - L1Md_F2 LINE L1 -9 6573 6093 3 1461 2402 235 30 47 chr12 114912340 114912755 -6344775 - L1_Mur2 LINE L1 -3727 2150 1742 3 1461 2615 69 15 12 chr12 114912755 114913093 -6344437 - L1Md_F3 LINE L1 -3 6581 6243 3 1461 23145 51 3 3 chr12 114913093 114915990 -6341540 - L1_Mm LINE L1 -391 5492 2598 3 1461 393 210 99 57 chr12 114915979 114916171 -6341359 - L1_Mur2 LINE L1 -4193 1684 1485 3 1461 1125 84 19 0 chr12 114916183 114916337 -6341193 - L1Md_F3 LINE L1 -1 6583 6427 3 1461 7839 78 11 1 chr12 114916337 114917649 -6339881 + L1Md_F2 LINE L1 4833 6161 -421 3 1461 1551 199 21 15 chr12 114917641 114918206 -6339324 - L1_Mur2 LINE L1 -4368 1509 939 3 1461 1942 102 14 4 chr12 114918549 114918824 -6338706 - L1_Mus2 LINE L1 -2 6564 6287 3 1461 930 197 58 47 chr12 114918824 114919165 -6338365 + RLTRETN_Mm LTR ERVK 54 393 0 3 1461 640 82 0 0 chr12 114919165 114919250 -6338280 - L1_Mus2 LINE L1 -251 6315 6231 3 1461 3726 73 55 0 chr12 114919248 114919753 -6337777 + L1_Mus2 LINE L1 5684 6216 -350 3 1461 1871 193 139 0 chr12 114919763 114920193 -6337337 - Lx2B LINE L1 0 7000 6511 3 1461 467 158 0 0 chr12 114920194 114920276 -6337254 + Lx2B LINE L1 5950 6031 -969 3 1461 326 204 23 0 chr12 114920283 114920371 -6337159 + Lx4A LINE L1 6964 7053 -5 4 1461 186 103 0 0 chr12 114921594 114921623 -6335907 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1461 363 78 0 0 chr12 114921689 114921740 -6335790 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1461 1636 280 15 119 chr12 114921913 114922650 -6334880 + Lx4B LINE L1 6391 7050 -8 4 1461 660 280 18 0 chr12 114922709 114922923 -6334607 - Lx3C LINE L1 -85 6973 6660 4 1461 975 260 9 0 chr12 114922927 114923150 -6334380 + Lx5 LINE L1 6419 6643 -407 4 1461 2590 153 0 0 chr12 114923162 114923555 -6333975 + L1_Mus4 LINE L1 6242 6634 -2 4 1461 236 131 0 21 chr12 114925337 114925384 -6332146 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1461 426 20 0 0 chr12 114925388 114925439 -6332091 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1461 211 211 0 186 chr12 114926165 114926235 -6331295 - B1_Mus2 SINE Alu -7 140 84 4 1461 5085 137 118 7 chr12 114926246 114926536 -6330994 + RMER17A2 LTR ERVK 1 297 -609 4 1461 411 21 0 0 chr12 114926536 114926584 -6330946 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1461 5085 137 118 7 chr12 114926584 114927109 -6330421 + RMER17A2 LTR ERVK 298 905 -1 4 1461 369 214 0 0 chr12 114927111 114927181 -6330349 + RLTR21 LTR ERVK 6 75 -1497 4 1461 2401 211 66 35 chr12 114927184 114927895 -6329635 + RLTR21 LTR ERVK 436 1168 -404 4 1461 546 43 0 0 chr12 114927898 114927967 -6329563 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 4 1461 23 0 0 0 chr12 114927976 114927999 -6329531 + AT_rich Low_complexity Low_complexity 1 23 0 4 1461 1439 238 11 4 chr12 114927999 114928337 -6329193 - MurERV4-int LTR ERVK -2338 2922 2528 4 1461 3875 232 16 33 chr12 114928341 114928598 -6328932 - MurERV4-int LTR ERVK -4252 1008 754 4 1461 2704 117 71 0 chr12 114928598 114928992 -6328538 + BGLII_Mus LTR ERVK 1 422 0 4 1461 3875 232 16 33 chr12 114928992 114929706 -6327824 - MurERV4-int LTR ERVK -4507 753 53 4 1461 418 233 29 10 chr12 114929734 114929838 -6327692 - RMER4A LTR ERVK 0 466 361 4 1461 399 21 0 0 chr12 114930831 114930879 -6326651 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1461 424 302 8 0 chr12 114931175 114931294 -6326236 + Lx8 LINE L1 6970 7089 -384 4 1461 1263 229 64 16 chr12 114931493 114931804 -6325726 - RMER17A LTR ERVK -14 795 470 4 1461 4749 80 11 20 chr12 114931804 114932441 -6325089 + L1Md_F2 LINE L1 5948 6578 -4 4 1461 215 241 0 0 chr12 114932738 114932792 -6324738 + A-rich Low_complexity Low_complexity 1 54 0 4 1461 2367 108 14 74 chr12 114932863 114933331 -6324199 - RMER17A LTR ERVK -325 426 1 4 1461 1994 223 28 7 chr12 114934603 114935027 -6322503 - Lx4B LINE L1 -57 7001 6569 4 1461 553 267 88 35 chr12 114935027 114935198 -6322332 - ORR1B1 LTR MaLR -174 220 41 4 1461 413 19 19 0 chr12 114935282 114935336 -6322194 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1461 1146 102 0 20 chr12 114936029 114936179 -6321351 - B1_Mus2 SINE Alu 0 147 1 4 1461 635 287 18 0 chr12 114937110 114937274 -6320256 - MTC LTR MaLR -1 420 254 4 1461 1089 84 21 0 chr12 114937950 114938093 -6319437 - B1_Mm SINE Alu 0 147 2 4 1461 293 396 57 12 chr12 114938855 114939103 -6318427 + B4A SINE B4 1 259 -33 4 1461 468 35 0 0 chr12 114939107 114939165 -6318365 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1461 223 321 0 0 chr12 114939171 114939277 -6318253 + (CAGAGA)n Simple_repeat Simple_repeat 3 108 0 4 1461 258 105 0 0 chr12 114939281 114939319 -6318211 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 4 1461 2057 259 61 12 chr12 114939608 114940194 -6317336 - Lx2B LINE L1 -25 6951 6337 4 1461 183 129 0 0 chr12 114941044 114941075 -6316455 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1461 734 250 17 0 chr12 114941557 114941733 -6315797 - L1_Mur2 LINE L1 -324 5553 5375 4 1461 8500 207 41 12 chr12 114941744 114944084 -6313446 - Lx2B LINE L1 -651 6349 3932 4 1461 208 357 0 12 chr12 114944095 114944180 -6313350 + CT-rich Low_complexity Low_complexity 2 85 0 4 1461 2453 247 19 8 chr12 114944180 114944871 -6312659 - Lx4B LINE L1 -16 7042 6253 4 1461 686 199 31 12 chr12 114944879 114945042 -6312488 - Lx2B LINE L1 -4328 1549 1384 4 1461 4729 10 2 0 chr12 114945049 114945541 -6311989 - MT2_Mm LTR ERVL 0 493 1 4 1461 322 0 0 0 chr12 114945541 114945579 -6311951 - MERVL_2A-int LTR ERVL 0 5485 5448 4 1461 358 167 46 35 chr12 114945579 114945666 -6311864 - ORR1A3-int LTR MaLR -1323 640 553 4 182 37503 75 8 1 chr12 114945673 114950990 -6306540 - MERVL_2A-int LTR ERVL -308 5453 1 4 1462 4717 10 2 0 chr12 114950990 114951482 -6306048 - MT2_Mm LTR ERVL 0 493 1 4 1462 379 330 48 75 chr12 114951489 114951835 -6305695 + RLTR17 LTR ERVK 60 429 -263 4 1462 274 269 50 42 chr12 114952217 114952337 -6305193 - Lx2B LINE L1 -6521 565 445 4 1462 1113 245 49 89 chr12 114952450 114952799 -6304731 - ORR1B1 LTR MaLR -19 375 41 4 1462 311 335 85 48 chr12 114953835 114954023 -6303507 - B3A SINE B2 -3 195 1 4 1462 3044 110 2 2 chr12 114956669 114957097 -6300433 + L1_Mus1 LINE L1 6057 6484 -83 4 1462 351 0 0 0 chr12 114957634 114957673 -6299857 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 1462 591 121 0 21 chr12 114957771 114957864 -6299666 + RMER17A2 LTR ERVK 1 91 -815 4 1462 1699 215 67 82 chr12 114957859 114958443 -6299087 + RLTR21 LTR ERVK 592 1168 -404 4 1462 452 18 18 0 chr12 114958443 114958500 -6299030 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 4 1462 1699 215 67 82 chr12 114958500 114958512 -6299018 + RLTR21 LTR ERVK 1169 1179 -393 4 1462 1399 223 20 0 chr12 114958531 114958827 -6298703 - MurERV4-int LTR ERVK -2338 2922 2621 4 1462 3694 246 15 31 chr12 114958829 114959087 -6298443 - MurERV4-int LTR ERVK -4252 1008 748 4 1462 2780 110 55 0 chr12 114959087 114959487 -6298043 + BGLII_Mus LTR ERVK 1 422 0 4 1462 3694 246 15 31 chr12 114959487 114960199 -6297331 - MurERV4-int LTR ERVK -4513 747 53 4 1462 652 205 25 43 chr12 114960227 114960390 -6297140 - RMER4A LTR ERVK 0 466 307 4 1462 1671 128 8 8 chr12 114960556 114960807 -6296723 + L1_Mus3 LINE L1 6383 6633 -5 4 1462 1268 225 67 7 chr12 114960813 114961113 -6296417 - RMER4A LTR ERVK -148 318 1 4 1462 618 14 0 0 chr12 114961234 114961307 -6296223 + L1Md_A LINE L1 6509 6581 -1 4 1462 238 327 26 0 chr12 114961521 114961634 -6295896 + CT-rich Low_complexity Low_complexity 5 120 0 4 1462 232 379 57 32 chr12 114962374 114962532 -6294998 + B4A SINE B4 61 222 -70 4 1462 378 0 0 0 chr12 114963684 114963726 -6293804 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1462 394 261 0 0 chr12 114964607 114964699 -6292831 + Lx8 LINE L1 6970 7061 -412 4 1462 1193 257 58 13 chr12 114964926 114965237 -6292293 - RMER17A LTR ERVK -15 794 470 4 1462 4651 87 11 22 chr12 114965237 114965875 -6291655 + L1Md_F2 LINE L1 5948 6578 -4 4 1462 189 178 0 0 chr12 114966170 114966215 -6291315 + A-rich Low_complexity Low_complexity 1 45 0 4 1462 1917 131 108 39 chr12 114966290 114966701 -6290829 - RMER17A LTR ERVK -325 426 1 4 1462 1809 206 58 8 chr12 114968007 114968388 -6289142 - Lx4B LINE L1 -90 6968 6569 4 1462 540 242 23 136 chr12 114968388 114968565 -6288965 - ORR1B1 LTR MaLR -190 204 1 4 1462 1156 116 0 0 chr12 114969327 114969474 -6288056 - B1_Mus2 SINE Alu 0 147 1 4 1462 682 273 12 0 chr12 114970408 114970569 -6286961 - MTC LTR MaLR -1 420 258 4 1462 257 0 30 0 chr12 114971902 114971935 -6285595 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1462 1012 112 0 0 chr12 114971937 114972071 -6285459 - B1_Mm SINE Alu -12 135 2 4 1462 256 406 57 12 chr12 114972836 114973083 -6284447 + B4A SINE B4 2 259 -33 4 1462 267 31 0 0 chr12 114973087 114973119 -6284411 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1462 247 267 19 19 chr12 114973124 114973231 -6284299 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 4 1462 519 60 0 0 chr12 114973236 114973303 -6284227 + (TAAG)n Simple_repeat Simple_repeat 1 67 0 4 1462 1927 267 61 12 chr12 114973598 114974190 -6283340 - Lx3C LINE L1 -25 6951 6331 4 1462 874 83 0 0 chr12 114975376 114975490 -6282040 + B1_Mus1 SINE Alu 26 139 -9 4 1462 306 0 0 0 chr12 114975490 114975524 -6282006 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1462 330 358 74 16 chr12 114976112 114976356 -6281174 + Lx8 LINE L1 7018 7275 -198 4 1462 1317 75 0 0 chr12 114976364 114976725 -6280805 + (CA)n Simple_repeat Simple_repeat 1 361 0 4 1462 9038 216 39 18 chr12 114978269 114981301 -6276229 - Lx5 LINE L1 -8 7042 3932 4 1462 190 197 28 14 chr12 114981329 114981401 -6276129 + CT-rich Low_complexity Low_complexity 2 74 0 4 1462 2391 245 19 12 chr12 114981401 114982095 -6275435 - Lx4B LINE L1 -16 7042 6253 4 1462 680 216 18 6 chr12 114982105 114982268 -6275262 - Lx5 LINE L1 -4329 1548 1384 4 1462 220 0 0 79 chr12 114982993 114983031 -6274499 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1462 269 330 8 25 chr12 114983032 114983150 -6274380 - Lx5 LINE L1 -6364 722 607 4 1462 1118 248 48 90 chr12 114983265 114983620 -6273910 - ORR1B1 LTR MaLR -14 380 41 4 1462 236 234 0 0 chr12 114984383 114984430 -6273100 - B1_Mus2 SINE Alu -7 140 94 4 1462 2340 260 40 57 chr12 114984464 114984764 -6272766 + RMER17A2 LTR ERVK 1 293 -516 4 1462 558 0 0 0 chr12 114984764 114984826 -6272704 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 1462 3177 151 8 4 chr12 114984826 114985344 -6272186 + RMER17A2 LTR ERVK 387 906 0 4 1462 362 240 0 0 chr12 114985340 114985415 -6272115 + RLTR21 LTR ERVK 1 75 -1497 4 1462 2306 217 55 63 chr12 114985418 114986177 -6271353 + RLTR21 LTR ERVK 436 1188 -384 4 1462 1405 209 34 17 chr12 114986197 114986494 -6271036 - MurERV4-int LTR ERVK -2338 2922 2621 4 1462 3931 235 13 37 chr12 114986494 114986756 -6270774 - MurERV4-int LTR ERVK -4250 1010 754 4 1462 2590 128 52 2 chr12 114986756 114987156 -6270374 + BGLII_Mus LTR ERVK 1 420 -2 4 1462 3931 235 13 37 chr12 114987156 114987874 -6269656 - MurERV4-int LTR ERVK -4507 753 53 4 1462 706 196 32 19 chr12 114987902 114988058 -6269472 - RMER4A LTR ERVK 0 466 309 4 1462 1538 145 12 8 chr12 114988220 114988470 -6269060 + L1_Mus3 LINE L1 6383 6633 -5 4 1462 1366 233 50 3 chr12 114988471 114988789 -6268741 - RMER4A LTR ERVK -133 333 1 4 1462 302 51 0 0 chr12 114989554 114989593 -6267937 - L1_Mus2 LINE L1 -6 6560 6522 4 1462 409 268 0 0 chr12 114990420 114990517 -6267013 + Lx8 LINE L1 6970 7066 -407 4 1462 3228 164 33 96 chr12 114990683 114991472 -6266058 - RMER17A LTR ERVK 0 751 13 4 1462 1927 234 20 16 chr12 114992762 114993200 -6264330 - Lx4B LINE L1 -63 6995 6556 4 1462 556 261 7 34 chr12 114993200 114993375 -6264155 - ORR1B1 LTR MaLR -190 204 1 4 1462 21 57 0 0 chr12 114993433 114993468 -6264062 + AT_rich Low_complexity Low_complexity 1 35 0 4 1462 20311 90 5 5 chr12 114994193 114997704 -6259826 - L1Md_F2 LINE L1 0 6582 3074 4 1462 4523 152 27 16 chr12 114997680 114998641 -6258889 - L1Md_F2 LINE L1 -5535 1189 208 4 1462 6210 118 8 0 chr12 114998652 114999547 -6257983 - L1_Mus1 LINE L1 0 6567 5666 4 1462 644 324 10 11 chr12 114999734 115000000 -6257530 - Lx3C LINE L1 -130 6846 6661 4 1462 1059 268 19 3 chr12 115000001 115000308 -6257222 - Lx2B LINE L1 -344 6656 6345 1 1462 8093 198 31 13 chr12 115001569 115003695 -6253835 - Lx2B LINE L1 -895 6105 3934 1 1462 241 279 0 14 chr12 115003697 115003766 -6253764 + CT-rich Low_complexity Low_complexity 2 69 0 2 1462 2161 256 25 8 chr12 115003766 115004452 -6253078 - Lx4B LINE L1 -16 7042 6253 3 1462 707 191 18 6 chr12 115004462 115004625 -6252905 - Lx2B LINE L1 -4329 1548 1384 1 1462 390 341 55 59 chr12 115004671 115004942 -6252588 + RLTR17 LTR ERVK 125 394 -298 4 1462 1216 238 48 88 chr12 115005591 115005945 -6251585 - ORR1B1 LTR MaLR -14 380 41 5 1462 370 313 88 16 chr12 115006999 115007181 -6250349 - B3A SINE B2 0 198 4 6 1462 288 0 0 0 chr12 115007420 115007452 -6250078 + (TAA)n Simple_repeat Simple_repeat 1 32 0 7 1462 189 94 0 0 chr12 115007716 115007748 -6249782 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1462 2476 138 51 2 chr12 115009788 115010201 -6247329 + L1Md_F2 LINE L1 6058 6490 -92 9 1462 203 125 25 0 chr12 115010405 115010445 -6247085 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 1 1462 220 234 0 0 chr12 115010786 115010833 -6246697 - B1_Mus2 SINE Alu -7 140 94 1 1462 4444 167 109 11 chr12 115010867 115011165 -6246365 + RMER17A2 LTR ERVK 1 297 -609 1 1462 659 78 10 0 chr12 115011165 115011268 -6246262 + (TC)n Simple_repeat Simple_repeat 2 105 0 1 1462 4444 167 109 11 chr12 115011268 115011794 -6245736 + RMER17A2 LTR ERVK 298 905 -1 1 1462 326 243 0 0 chr12 115011795 115011865 -6245665 + RLTR21 LTR ERVK 6 75 -1497 1 1462 1622 211 193 42 chr12 115011868 115012463 -6245067 + RLTR21 LTR ERVK 436 1120 -452 1 1462 225 277 0 0 chr12 115012461 115012508 -6245022 + RMER12B LTR ERVK 1155 1201 -203 1 1462 342 0 0 0 chr12 115012510 115012548 -6244982 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1462 1322 213 20 10 chr12 115012576 115012875 -6244655 - MurERV4-int LTR ERVK -2338 2922 2621 1 1462 3681 223 16 31 chr12 115012879 115013133 -6244397 - MurERV4-int LTR ERVK -4254 1006 748 1 1462 2406 138 55 0 chr12 115013133 115013533 -6243997 + BGLII_Mus LTR ERVK 1 422 0 1 1462 3681 223 16 31 chr12 115013533 115014246 -6243284 - MurERV4-int LTR ERVK -4513 747 53 1 1462 640 213 26 26 chr12 115014274 115014428 -6243102 - RMER4A LTR ERVK 0 466 313 1 1462 1069 117 11 11 chr12 115014607 115014788 -6242742 + L1_Mus3 LINE L1 6383 6563 -75 2 1462 1740 49 0 9 chr12 115014788 115015016 -6242514 - L1Md_F3 LINE L1 -15 6569 6344 2 1462 1353 67 0 0 chr12 115015017 115015195 -6242335 + L1Md_F3 LINE L1 6122 6299 -285 2 1462 438 150 0 0 chr12 115015195 115015275 -6242255 + Lx LINE L1 6569 6648 -6 2 1462 1262 217 60 21 chr12 115015293 115015576 -6241954 - RMER4A LTR ERVK -172 294 1 1 1462 282 264 0 59 chr12 115015768 115015870 -6241660 - RLTR31_Mm LTR ERVK -2 690 625 2 1462 2166 190 34 48 chr12 115015971 115016468 -6241062 - RLTR31_Mm LTR ERVK -71 490 1 2 1462 563 390 42 28 chr12 115016480 115016765 -6240765 + B4A SINE B4 4 292 0 2 1462 444 19 0 0 chr12 115017369 115017422 -6240108 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1462 474 18 0 0 chr12 115017422 115017476 -6240054 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1462 232 313 15 7 chr12 115017893 115018028 -6239502 + (CATA)n Simple_repeat Simple_repeat 1 136 0 2 1462 213 333 18 27 chr12 115018145 115018256 -6239274 + CT-rich Low_complexity Low_complexity 3 112 0 2 1462 235 390 56 19 chr12 115018991 115019153 -6238377 + B4A SINE B4 55 222 -70 2 1462 274 66 0 0 chr12 115020299 115020349 -6237181 - L1_Mus2 LINE L1 -8 6574 6522 3 1462 376 268 0 0 chr12 115021183 115021280 -6236250 + Lx8 LINE L1 6970 7066 -407 3 1462 3204 157 32 119 chr12 115021444 115022253 -6235277 - RMER17A LTR ERVK 0 751 13 3 1462 1779 231 18 16 chr12 115023558 115023997 -6233533 - Lx4B LINE L1 -63 6995 6556 3 1462 541 271 7 34 chr12 115023997 115024172 -6233358 - ORR1B1 LTR MaLR -190 204 1 3 1462 393 22 0 0 chr12 115024246 115024292 -6233238 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1462 17209 62 2 1 chr12 115025032 115028007 -6229523 - L1Md_F2 LINE L1 0 6582 3607 3 1462 948 106 0 13 chr12 115028008 115028161 -6229369 - L1Md_Gf LINE L1 -6307 215 65 3 1462 7872 196 32 12 chr12 115028154 115029994 -6227536 - L1_Mur2 LINE L1 -83 5794 3919 3 1462 243 286 0 14 chr12 115030005 115030076 -6227454 + CT-rich Low_complexity Low_complexity 3 72 0 3 1462 2177 258 17 4 chr12 115030077 115030766 -6226764 - Lx4B LINE L1 -16 7042 6253 4 1462 683 199 19 6 chr12 115030776 115030938 -6226592 - L1_Mur2 LINE L1 -4329 1548 1385 3 1462 351 353 58 60 chr12 115030953 115031257 -6226273 + RLTR17 LTR ERVK 34 394 -298 4 1462 1187 236 51 90 chr12 115031907 115032261 -6225269 - ORR1B1 LTR MaLR -14 380 41 4 1462 378 353 64 16 chr12 115033308 115033495 -6224035 - B3A SINE B2 -2 196 1 4 1462 625 24 12 12 chr12 115035162 115035246 -6222284 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 4 1462 414 0 0 0 chr12 115035246 115035292 -6222238 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1462 194 62 31 0 chr12 115035582 115035614 -6221916 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 1462 242 302 68 54 chr12 115036630 115036777 -6220753 - RMER12B LTR ERVK -149 1255 1107 4 1462 306 50 0 0 chr12 115038546 115038586 -6218944 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1462 2441 242 57 27 chr12 115038742 115039413 -6218117 + Lx5 LINE L1 6358 7048 -2 4 1462 29 28 0 0 chr12 115039922 115039958 -6217572 + AT_rich Low_complexity Low_complexity 1 36 0 5 1462 235 140 52 17 chr12 115042002 115042060 -6215470 + GA-rich Low_complexity Low_complexity 2 61 0 5 1462 328 273 55 157 chr12 115043172 115043389 -6214141 + MT2A LTR ERVL 3 197 -336 5 1462 1130 256 38 11 chr12 115043334 115043599 -6213931 - MTC LTR MaLR -149 272 1 5 1462 238 295 68 37 chr12 115043810 115044000 -6213530 - L1M2 LINE L1 -588 5703 5508 5 1462 427 314 117 39 chr12 115044492 115044671 -6212859 - B3A SINE B2 -2 196 4 5 1462 820 35 17 9 chr12 115046438 115046554 -6210976 + (CTATT)n Simple_repeat Simple_repeat 4 120 0 5 1462 1270 210 113 37 chr12 115046602 115046802 -6210728 - RMER17C LTR ERVK 0 410 212 5 1462 665 96 17 0 chr12 115046802 115046917 -6210613 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 5 1462 1270 210 113 37 chr12 115046917 115047097 -6210433 - RMER17C LTR ERVK -199 211 2 5 1462 207 88 0 0 chr12 115047410 115047444 -6210086 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1462 9521 94 5 1 chr12 115047444 115049071 -6208459 - L1_Mus2 LINE L1 -504 6062 4430 6 1462 2452 108 82 0 chr12 115049073 115049461 -6208069 + L1_Mus2 LINE L1 6092 6511 -55 6 1462 222 136 0 0 chr12 115049508 115049552 -6207978 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 6 1462 1035 109 0 0 chr12 115049673 115049811 -6207719 - B1_Mus1 SINE Alu -10 138 1 6 1462 1019 330 52 50 chr12 115050949 115051351 -6206179 + MTD LTR MaLR 1 403 -16 6 1462 1934 249 110 28 chr12 115051365 115052001 -6205529 + RMER6C LTR ERVK 1 688 -2 6 1462 4733 218 197 20 chr12 115052439 115054351 -6203179 + L1_Mur2 LINE L1 921 3170 -2707 6 1462 4212 82 2 14 chr12 115054370 115054949 -6202581 - L1_Mus1 LINE L1 -1 6566 5995 6 1462 5853 89 1 1 chr12 115054949 115055886 -6201644 + L1_Mus1 LINE L1 5032 5968 -598 6 1462 6477 185 99 38 chr12 115055879 115056560 -6200970 + L1_Mur2 LINE L1 3157 3952 -1925 6 1462 312 27 0 0 chr12 115056560 115056597 -6200933 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1462 6477 185 99 38 chr12 115056597 115057288 -6200242 + L1_Mur2 LINE L1 3953 4643 -1234 6 1462 2942 38 0 0 chr12 115057288 115057634 -6199896 - ORR1A0 LTR MaLR 0 346 1 6 1462 6477 185 99 38 chr12 115057634 115058014 -6199516 + L1_Mur2 LINE L1 4644 5017 -860 6 1462 1038 218 0 33 chr12 115058012 115058254 -6199276 + L1_Mur2 LINE L1 5298 5531 -346 6 1462 798 123 29 0 chr12 115058491 115058629 -6198901 - L1_Mus3 LINE L1 -18 6620 6479 6 1462 518 244 50 0 chr12 115059018 115059137 -6198393 - ETnERV2-int LTR ERVK -204 7202 7078 7 1462 6259 104 1 34 chr12 115059137 115060282 -6197248 - L1_Mus3 LINE L1 -142 6496 5446 7 1462 402 21 0 0 chr12 115060282 115060329 -6197201 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1462 4724 118 5 147 chr12 115060329 115060838 -6196692 - L1_Mus3 LINE L1 -438 5445 4994 7 1462 486 0 0 0 chr12 115063911 115063965 -6193565 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 7 1462 2449 155 6 36 chr12 115063965 115064434 -6193096 + Lx2B LINE L1 6352 6806 -194 7 1462 232 306 0 36 chr12 115064458 115064570 -6192960 + (CAGAGA)n Simple_repeat Simple_repeat 2 109 0 7 1462 435 352 55 12 chr12 115066454 115066779 -6190751 + Lx8 LINE L1 6962 7300 -173 7 1462 1934 273 39 2 chr12 115068982 115069528 -6188002 - Lx5 LINE L1 -4 7046 6481 7 1462 1441 229 145 32 chr12 115069521 115070053 -6187477 - Lx5 LINE L1 -687 6363 5772 7 1462 2739 248 98 44 chr12 115070081 115070922 -6186608 - RMER17B LTR ERVK -72 886 1 7 1462 950 67 15 0 chr12 115070922 115071057 -6186473 - Lx4B LINE L1 -1280 5778 5642 7 1462 1111 317 49 23 chr12 115071069 115071460 -6186070 + MTD LTR MaLR 1 401 -18 8 1462 2101 214 163 7 chr12 115071476 115072070 -6185460 + RMER6C LTR ERVK 1 687 -3 8 1462 1638 246 18 4 chr12 115072476 115073160 -6184370 + L1_Mur3 LINE L1 898 1654 -4223 8 1462 316 268 56 91 chr12 115073188 115073385 -6184145 + MER82 DNA MER2_type 203 392 -261 8 1462 5456 127 40 18 chr12 115074402 115075286 -6182244 + RMER17A2 LTR ERVK 1 903 -3 8 1462 225 0 0 0 chr12 115075914 115075939 -6181591 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1462 522 354 43 16 chr12 115076054 115076312 -6181218 + B4A SINE B4 1 265 -27 8 1462 225 0 0 0 chr12 115076315 115076340 -6181190 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1462 396 184 0 0 chr12 115076351 115076449 -6181081 + GA-rich Low_complexity Low_complexity 1 98 0 8 1462 7818 194 26 17 chr12 115077513 115079379 -6178151 - L1_Mur2 LINE L1 -78 5799 3916 8 1462 334 188 0 30 chr12 115079441 115079507 -6178023 - ORR1A4 LTR MaLR -265 64 1 9 1463 680 224 6 32 chr12 115081583 115081740 -6175790 - MTC LTR MaLR -11 410 258 9 1463 5580 147 22 9 chr12 115082617 115083377 -6174153 - Lx3C LINE L1 -383 6593 5823 9 1463 6952 102 22 15 chr12 115083377 115084393 -6173137 - RLTR13D5 LTR ERVK 0 1023 1 9 1463 5580 158 16 8 chr12 115084393 115084999 -6172531 - Lx3C LINE L1 -61 5825 5216 9 1463 518 163 0 0 chr12 115084997 115085083 -6172447 + Lx3C LINE L1 5144 5229 -648 9 1463 4359 184 16 0 chr12 115085086 115085902 -6171628 + Lx LINE L1 5815 6643 -11 9 1463 2524 176 20 72 chr12 115086439 115087444 -6170086 + L1_Mus1 LINE L1 436 1400 -2514 9 1463 1541 35 5 0 chr12 115087443 115087645 -6169885 - L1Md_F3 LINE L1 -616 5968 5766 9 1463 4790 51 3 0 chr12 115087645 115088232 -6169298 + L1Md_F3 LINE L1 5982 6570 -14 9 1463 27214 115 8 1 chr12 115088243 115093389 -6164141 + L1_Mus1 LINE L1 1386 6567 0 9 1463 596 178 0 2 chr12 115093405 115093527 -6164003 + L1_Mm LINE L1 4625 4773 -1110 9 1463 700 201 20 7 chr12 115094118 115094268 -6163262 - MTC LTR MaLR -12 409 258 9 1463 1160 70 0 0 chr12 115094710 115094852 -6162678 - B1_Mus2 SINE Alu -5 142 1 9 1463 495 0 0 0 chr12 115095446 115095501 -6162029 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1463 1023 172 72 5 chr12 115095571 115095793 -6161737 + Lx2B LINE L1 6764 7000 0 1 1463 232 286 0 0 chr12 115096890 115096960 -6160570 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1463 228 148 54 36 chr12 115096961 115097073 -6160457 + (CAGAGA)n Simple_repeat Simple_repeat 3 116 0 1 1463 329 312 48 82 chr12 115099690 115099959 -6157571 - L1M4 LINE L1 -519 5655 5396 1 1463 1355 174 3 7 chr12 115100382 115100665 -6156865 - L1_Mur2 LINE L1 -1648 4229 3948 1 1463 3244 212 43 22 chr12 115100667 115101580 -6155950 - L1_Mur2 LINE L1 -3368 2509 1578 1 1463 8526 148 77 8 chr12 115101593 115103453 -6154077 - Lx LINE L1 0 6654 4730 1 1463 261 0 0 0 chr12 115103453 115103482 -6154048 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1463 8526 187 147 16 chr12 115103482 115104545 -6152985 - Lx LINE L1 -1148 4729 3418 1 1463 34903 85 22 11 chr12 115104560 115110999 -6146531 - L1Md_F3 LINE L1 -14 6573 220 1 1463 532 233 7 7 chr12 115111026 115111177 -6146353 + L1Md_T LINE L1 6432 6582 0 1 1463 12075 127 21 16 chr12 115111177 115113977 -6143553 - L1VL4 LINE L1 -537 3022 204 1 1463 1771 271 117 22 chr12 115116063 115116645 -6140885 - RLTR26 LTR ERVK 0 642 6 1 1463 28 86 0 0 chr12 115118156 115118226 -6139304 + AT_rich Low_complexity Low_complexity 1 70 0 1 1463 667 295 84 20 chr12 115119732 115120126 -6137404 + MTD LTR MaLR 1 419 0 1 1463 802 45 18 0 chr12 115120240 115120351 -6137179 + (CA)n Simple_repeat Simple_repeat 2 114 0 1 1463 351 350 8 33 chr12 115120428 115120549 -6136981 - B1_Mur1 SINE Alu -30 119 2 1 1463 52 41 0 0 chr12 115120566 115120639 -6136891 + AT_rich Low_complexity Low_complexity 1 73 0 1 1463 533 226 57 97 chr12 115120845 115121021 -6136509 - RMER12 LTR ERVK -135 1187 1019 1 1463 366 23 0 0 chr12 115121022 115121065 -6136465 + (GAGAA)n Simple_repeat Simple_repeat 3 45 0 1 1463 1384 17 11 17 chr12 115121065 115121243 -6136287 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1463 627 14 0 0 chr12 115121246 115121318 -6136212 + (GAGAA)n Simple_repeat Simple_repeat 1 72 0 1 1463 3887 155 41 26 chr12 115121334 115122109 -6135421 - RMER12 LTR ERVK -535 787 1 1 1463 562 60 24 0 chr12 115122159 115122242 -6135288 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 1463 1607 195 93 14 chr12 115122449 115122863 -6134667 + RMER17C LTR ERVK 1 479 -479 1 1463 3022 50 17 24 chr12 115123316 115123495 -6134035 - RLTR9F LTR ERVK -4 411 233 1 1463 252 0 0 0 chr12 115123495 115123523 -6134007 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1 1463 3022 50 17 24 chr12 115123523 115123755 -6133775 - RLTR9F LTR ERVK -183 232 3 1 1463 2793 170 17 4 chr12 115123758 115124365 -6133165 - Lx5 LINE L1 -919 6131 5512 1 1463 534 31 0 0 chr12 115124414 115124478 -6133052 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 1 1463 316 343 66 15 chr12 115124534 115124670 -6132860 - B3A SINE B2 -55 143 1 1 1463 3049 59 201 2 chr12 115124757 115125184 -6132346 + RLTR1B LTR ERV1 1 512 0 1 1463 2277 227 27 87 chr12 115125715 115126378 -6131152 + RMER6C LTR ERVK 3 624 -66 1 1463 432 0 0 0 chr12 115126378 115126426 -6131104 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1463 2277 227 27 87 chr12 115126426 115126437 -6131093 + RMER6C LTR ERVK 625 636 -54 1 1463 316 238 148 0 chr12 115126437 115126538 -6130992 - Lx5 LINE L1 -16 7034 6919 1 1463 21 0 0 0 chr12 115126634 115126655 -6130875 + AT_rich Low_complexity Low_complexity 1 21 0 1 1463 229 274 59 12 chr12 115127053 115127138 -6130392 + Lx6 LINE L1 7348 7436 -24 1 1463 30934 76 9 4 chr12 115127260 115132200 -6125330 + L1Md_F3 LINE L1 624 5585 -298 1 1463 8218 41 5 0 chr12 115132201 115133192 -6124338 + L1Md_F3 LINE L1 5587 6582 -2 1 1463 526 226 11 40 chr12 115133217 115133392 -6124138 + L1_Mur3 LINE L1 4596 4765 -1115 1 1463 596 259 45 17 chr12 115133373 115133609 -6123921 + Lx7 LINE L1 6758 7026 -434 1 1463 273 284 75 0 chr12 115133629 115133818 -6123712 + L1M2 LINE L1 5386 5586 -570 1 1463 750 53 0 0 chr12 115134989 115135084 -6122446 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1463 25 0 0 0 chr12 115135585 115135610 -6121920 + AT_rich Low_complexity Low_complexity 1 25 0 1 1463 1939 146 57 6 chr12 115136290 115136641 -6120889 - Lx LINE L1 -39 6615 6247 1 1463 5442 199 65 2 chr12 115136692 115137746 -6119784 - Lx3C LINE L1 -15 6961 5839 1 1463 3340 67 31 20 chr12 115137746 115138200 -6119330 - L1Md_F2 LINE L1 -11 6571 6113 1 1463 5442 199 65 2 chr12 115138200 115138401 -6119129 - Lx3C LINE L1 -1138 5838 5629 1 1463 6623 173 29 42 chr12 115138392 115139878 -6117652 + Lx3C LINE L1 4139 5605 -281 1 1463 661 147 32 39 chr12 115139878 115140034 -6117496 + L1_Mus3 LINE L1 6484 6638 0 1 1463 674 314 9 37 chr12 115140088 115140412 -6117118 - Lx8 LINE L1 -541 6932 6618 1 1463 586 276 13 0 chr12 115140526 115140682 -6116848 + Lx8 LINE L1 6316 6473 -1000 1 1463 3844 104 55 19 chr12 115140780 115141679 -6115851 + L1Md_F LINE L1 592 1526 -4357 1 1463 7048 186 63 9 chr12 115141679 115144016 -6113514 + Lx LINE L1 4182 6646 -8 1 1463 1721 183 71 12 chr12 115144254 115144591 -6112939 + RMER17A2 LTR ERVK 539 895 -11 1 1463 468 0 0 0 chr12 115145873 115145925 -6111605 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1463 9005 124 8 1 chr12 115146034 115147968 -6109562 + L1_Mus2 LINE L1 718 2664 -3219 1 1463 6765 91 16 1 chr12 115147969 115149627 -6107903 + L1_Mus2 LINE L1 4884 6565 -1 1 1463 1348 197 78 17 chr12 115151507 115151801 -6105729 - RMER4A LTR ERVK -146 320 9 1 1463 3232 224 29 9 chr12 115152524 115153273 -6104257 + Lx2B LINE L1 6231 6994 -6 1 1463 1537 166 35 55 chr12 115154698 115155042 -6102488 - Lx2 LINE L1 0 6997 6661 1 1463 318 231 0 13 chr12 115155122 115155201 -6102329 + ORR1D2 LTR MaLR 291 368 -2 1 1463 22 35 0 0 chr12 115155696 115155725 -6101805 + AT_rich Low_complexity Low_complexity 1 29 0 1 1463 237 238 32 0 chr12 115155786 115155849 -6101681 + GA-rich Low_complexity Low_complexity 1 65 0 1 1463 631 328 82 23 chr12 115156185 115156538 -6100992 - Lx8 LINE L1 -127 7346 6973 1 1463 1705 173 3 24 chr12 115156803 115157135 -6100395 - ORR1A3 LTR MaLR -1 325 1 1 1463 2480 165 2 100 chr12 115157135 115157666 -6099864 - ORR1A3-int LTR MaLR 0 1963 1485 1 1463 1097 105 83 0 chr12 115157699 115157880 -6099650 - Lx2A1 LINE L1 -1176 5832 5637 1 1463 1939 141 10 10 chr12 115157886 115158195 -6099335 - RLTR27 LTR ERVK 0 309 1 1 1463 1426 150 4 23 chr12 115158195 115158461 -6099069 - MMERVK10C-int LTR ERVK 0 7581 7321 1 1463 363 296 29 23 chr12 115158586 115158759 -6098771 - MMERVK10C-int LTR ERVK -501 7080 6907 1 1463 2732 303 35 37 chr12 115158977 115160805 -6096725 - MMERVK10C-int LTR ERVK -2103 5478 3654 1 1463 249 163 0 0 chr12 115160871 115160920 -6096610 + T-rich Low_complexity Low_complexity 1 49 0 1 1463 308 255 0 62 chr12 115161103 115161216 -6096314 + T-rich Low_complexity Low_complexity 5 110 0 1 1463 379 262 59 52 chr12 115161217 115161370 -6096160 - RLTR10-int LTR ERVK -1135 852 699 1 1463 198 0 0 0 chr12 115161370 115161392 -6096138 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1463 306 67 38 0 chr12 115161468 115161521 -6096009 - RLTR10-int LTR ERVK -7314 267 163 1 1463 1709 145 67 27 chr12 115161546 115161843 -6095687 - RLTR27 LTR ERVK 0 309 1 1 1463 4177 123 105 1 chr12 115161847 115162525 -6095005 + L1_Mus4 LINE L1 5881 6628 -8 1 1463 3854 201 112 23 chr12 115162539 115163509 -6094021 - ORR1A3-int LTR MaLR -466 1497 441 1 1463 1588 257 6 0 chr12 115164151 115164486 -6093044 + RLTR21 LTR ERVK 6 342 -1230 1 1463 1308 134 5 0 chr12 115164490 115164699 -6092831 - ORR1A3-int LTR MaLR -703 1260 1051 1 1463 1328 199 105 35 chr12 115164666 115165010 -6092520 + RLTR21 LTR ERVK 309 676 -896 1 1463 1688 220 5 29 chr12 115165016 115165229 -6092301 - Lx2B LINE L1 -289 6711 6506 1 1463 6262 106 11 12 chr12 115165229 115166188 -6091342 + RLTR13A2 LTR ERVK 1 958 0 1 1463 1688 220 5 29 chr12 115166188 115166391 -6091139 - Lx2B LINE L1 -495 6505 6305 1 1463 1365 234 56 36 chr12 115167498 115167889 -6089641 + RLTR40 LTR ERVK 172 570 -247 1 1463 815 67 8 0 chr12 115167891 115168010 -6089520 + (GA)n Simple_repeat Simple_repeat 2 121 0 1 1463 380 252 9 64 chr12 115168014 115168124 -6089406 + RLTR40 LTR ERVK 625 728 -89 1 1463 24 0 0 0 chr12 115169846 115169870 -6087660 + AT_rich Low_complexity Low_complexity 1 24 0 1 1463 25 83 0 0 chr12 115171441 115171501 -6086029 + AT_rich Low_complexity Low_complexity 1 60 0 1 1463 1976 174 3 0 chr12 115172115 115172465 -6085065 - Lx3C LINE L1 -224 6752 6402 1 1463 271 308 0 0 chr12 115173621 115173725 -6083805 + Lx9 LINE L1 6951 7054 -590 1 1463 246 148 32 16 chr12 115173807 115173869 -6083661 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1463 207 0 0 0 chr12 115174226 115174249 -6083281 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1463 238 371 0 28 chr12 115174319 115174427 -6083103 + ID_B1 SINE B4 89 193 -31 1 1463 1253 73 11 11 chr12 115174470 115174650 -6082880 - L1_Mus3 LINE L1 -3 6635 6456 1 1463 495 333 136 11 chr12 115175310 115175760 -6081770 + L1M2 LINE L1 4057 4562 -1581 1 1463 816 294 92 80 chr12 115175793 115176207 -6081323 + MTD LTR MaLR 1 419 0 1 1463 1477 267 85 17 chr12 115176398 115176870 -6080660 - RLTR20B3 LTR ERVK -53 524 21 1 1463 525 44 0 0 chr12 115176989 115177057 -6080473 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1463 696 243 131 31 chr12 115177566 115177825 -6079705 - RMER12 LTR ERVK 0 1322 1038 1 1463 1165 89 10 15 chr12 115177858 115178062 -6079468 - MusHAL1 LINE L1 0 2712 2510 1 1463 1171 111 28 0 chr12 115178067 115178247 -6079283 - B2_Mm2 SINE B2 -10 185 1 1 1463 519 236 0 7 chr12 115178256 115178397 -6079133 - L1_Mur3 LINE L1 -903 4977 4838 1 1463 356 275 0 74 chr12 115178398 115178547 -6078983 - L1_Mur3 LINE L1 -1173 4707 4570 1 1463 213 146 0 0 chr12 115178559 115178569 -6078961 + (A)n Simple_repeat Simple_repeat 1 10 0 1 1463 1072 103 0 0 chr12 115178569 115178714 -6078816 + B1_Mus2 SINE Alu 3 147 0 1 1463 213 146 0 0 chr12 115178714 115178744 -6078786 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1463 536 320 46 39 chr12 115178858 115179141 -6078389 + RLTR15 LTR ERVK 10 294 -65 1 1463 642 85 0 0 chr12 115179177 115179271 -6078259 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 1463 1043 305 83 11 chr12 115179274 115179648 -6077882 + Lx6 LINE L1 6850 7250 -210 1 1463 7095 79 3 2 chr12 115179672 115180851 -6076679 - L1_Mus1 LINE L1 -2 6565 5389 1 1463 21 36 0 0 chr12 115180912 115180940 -6076590 + AT_rich Low_complexity Low_complexity 1 28 0 1 1463 279 114 0 0 chr12 115181147 115181191 -6076339 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1463 21 0 0 0 chr12 115181230 115181251 -6076279 + AT_rich Low_complexity Low_complexity 1 21 0 1 1463 276 77 0 0 chr12 115181570 115181609 -6075921 + (TCC)n Simple_repeat Simple_repeat 2 40 0 1 1463 1131 107 0 0 chr12 115181613 115181962 -6075568 + (TTC)n Simple_repeat Simple_repeat 1 349 0 2 1463 3730 143 115 32 chr12 115181995 115182741 -6074789 + RLTR13C2 LTR ERVK 1 808 0 2 1463 277 286 63 14 chr12 115182780 115182922 -6074608 + RLTR19-int LTR ERVK 2723 2871 -3266 2 1463 748 269 50 73 chr12 115183495 115183936 -6073594 + RLTR19-int LTR ERVK 3529 3959 -2178 2 1463 2999 226 43 40 chr12 115184553 115185694 -6071836 + L1_Mur3 LINE L1 2799 3942 -1938 2 1463 1220 92 48 11 chr12 115185945 115186131 -6071399 - B2_Mm2 SINE B2 -2 193 1 2 1463 24 32 0 0 chr12 115187206 115187237 -6070293 + AT_rich Low_complexity Low_complexity 1 31 0 2 1463 231 196 86 26 chr12 115187723 115187875 -6069655 + (CATAT)n Simple_repeat Simple_repeat 3 163 0 2 1463 210 225 78 19 chr12 115187952 115188106 -6069424 + (CATAT)n Simple_repeat Simple_repeat 1 163 0 2 1463 484 174 8 8 chr12 115188884 115189006 -6068524 + GA-rich Low_complexity Low_complexity 3 124 0 2 1463 450 0 0 0 chr12 115189172 115189222 -6068308 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1463 555 29 0 0 chr12 115189224 115189293 -6068237 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1463 2873 198 88 20 chr12 115189293 115189979 -6067551 + RLTR21 LTR ERVK 1 732 -840 2 1463 10277 165 12 10 chr12 115189979 115192975 -6064555 - Lx LINE L1 -42 6612 3610 2 1463 1004 186 80 0 chr12 115193123 115193330 -6064200 - L1_Mur2 LINE L1 -2182 3695 3477 2 1463 222 37 0 0 chr12 115193330 115193357 -6064173 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 1463 1004 186 80 0 chr12 115193357 115193386 -6064144 - L1_Mur2 LINE L1 -2401 3476 3442 2 1463 3633 72 4 42 chr12 115193390 115193896 -6063634 - L1_Mus2 LINE L1 0 6566 6080 2 1463 1022 251 72 37 chr12 115193986 115194362 -6063168 + RLTR40 LTR ERVK 35 423 -394 2 1463 26 30 0 0 chr12 115194956 115194989 -6062541 + AT_rich Low_complexity Low_complexity 1 33 0 2 1463 351 318 82 53 chr12 115194989 115195271 -6062259 - Lx8 LINE L1 -5 7468 7179 2 1463 757 353 36 0 chr12 115195288 115195512 -6062018 + RMER12B LTR ERVK 1 232 -1172 2 1463 1044 193 4 9 chr12 115195512 115195737 -6061793 + Lx2 LINE L1 4645 4868 -1015 2 1463 276 102 0 0 chr12 115195737 115195786 -6061744 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1463 1360 62 0 48 chr12 115195786 115195973 -6061557 + IAPEY_LTR LTR ERVK 208 385 0 2 1463 8919 105 19 5 chr12 115195973 115198035 -6059495 + L1_Mus2 LINE L1 4388 6484 -82 2 1463 6432 72 6 2 chr12 115198035 115198885 -6058645 - RLTR13A LTR ERVK -2 853 1 2 1463 6822 78 11 11 chr12 115198885 115198974 -6058556 + L1_Mus2 LINE L1 6485 6564 -2 2 1463 2961 191 8 6 chr12 115198996 115199515 -6058015 + Lx2 LINE L1 5262 5781 -102 2 1463 411 55 0 0 chr12 115199515 115199570 -6057960 + L1_Mus2 LINE L1 6510 6564 -2 2 1463 3377 95 0 17 chr12 115199569 115200050 -6057480 + L1Md_F2 LINE L1 6110 6582 0 2 1463 2961 146 18 4 chr12 115200050 115200347 -6057183 + Lx2 LINE L1 5782 6087 -910 2 1463 3119 100 2 5 chr12 115200350 115200784 -6056746 - RLTR9B LTR ERVK -2 435 3 2 1463 2727 174 113 4 chr12 115200786 115201546 -6055984 + Lx2 LINE L1 6084 6926 -71 2 1463 226 261 43 14 chr12 115201563 115201633 -6055897 + RLTR21 LTR ERVK 1346 1417 -155 2 1463 356 303 43 25 chr12 115201767 115202048 -6055482 - L1_Mur3 LINE L1 -6525 1187 902 2 1463 3536 94 31 6 chr12 115203427 115203942 -6053588 - Lx3_Mus LINE L1 0 7009 6482 2 1463 2799 125 2 11 chr12 115203942 115204394 -6053136 + Lx3_Mus LINE L1 6079 6526 -483 2 1463 477 0 0 0 chr12 115207188 115207241 -6050289 + (TAA)n Simple_repeat Simple_repeat 3 55 0 2 1463 822 312 63 14 chr12 115208433 115208719 -6048811 + ORR1D2 LTR MaLR 63 362 -8 2 1463 6774 96 51 3 chr12 115208852 115209837 -6047693 + RLTR13D4 LTR ERVK 2 1033 0 2 1463 26 30 0 0 chr12 115209857 115209890 -6047640 + AT_rich Low_complexity Low_complexity 1 33 0 2 1463 454 220 48 36 chr12 115209900 115210065 -6047465 - Lx3B LINE L1 -6 6967 6801 2 1463 23 0 0 0 chr12 115210332 115210355 -6047175 + AT_rich Low_complexity Low_complexity 1 23 0 2 1463 5252 182 28 11 chr12 115210555 115211564 -6045966 - Lx3B LINE L1 -7 6966 5941 2 1463 2297 160 7 69 chr12 115211569 115212106 -6045424 + Lx4B LINE L1 4684 5187 -699 2 1464 768 296 53 94 chr12 115212610 115213209 -6044321 - RMER13B LTR ERVK -4 904 388 2 1464 936 188 4 16 chr12 115215055 115215294 -6042236 - L1_Mur2 LINE L1 -3621 2259 2032 2 1464 278 237 83 8 chr12 115215305 115215437 -6042093 - RMER13B LTR ERVK -517 389 248 2 1464 328 241 0 0 chr12 115215437 115215516 -6042014 - L1_Mur2 LINE L1 -3850 2027 1949 2 1464 2228 188 22 14 chr12 115215514 115216099 -6041431 + Lx4B LINE L1 5509 6116 -942 2 1464 6573 166 15 55 chr12 115216101 115217293 -6040237 + Lx3B LINE L1 4484 5615 -271 2 1464 1138 55 14 0 chr12 115217293 115217439 -6040091 - B1_Mus1 SINE Alu 0 148 1 2 1464 6573 173 40 18 chr12 115217439 115218325 -6039205 + Lx3B LINE L1 5595 6524 -449 2 1464 1405 177 53 0 chr12 115218325 115218591 -6038939 + Lx4B LINE L1 6689 6968 -8 2 1464 22 80 0 0 chr12 115218591 115218641 -6038889 + AT_rich Low_complexity Low_complexity 1 50 0 2 1464 1004 114 0 0 chr12 115218790 115218930 -6038600 + B1_Mus2 SINE Alu 2 141 -6 2 1464 291 28 0 0 chr12 115218932 115218968 -6038562 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2 1464 282 56 0 0 chr12 115219298 115219334 -6038196 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1464 1121 249 64 90 chr12 115219354 115219711 -6037819 + ORR1B1 LTR MaLR 47 394 0 2 1464 206 231 0 0 chr12 115219813 115219852 -6037678 + CT-rich Low_complexity Low_complexity 3 41 0 2 1464 3904 82 8 4 chr12 115221810 115222338 -6035192 + L1_Mus2 LINE L1 6019 6548 -18 2 1464 5814 29 1 0 chr12 115222336 115223021 -6034509 + L1Md_A LINE L1 5894 6579 -3 2 1464 450 0 0 0 chr12 115223044 115223094 -6034436 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 2 1464 441 181 0 0 chr12 115223476 115223570 -6033960 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 1464 214 291 45 23 chr12 115223995 115224083 -6033447 + B4 SINE B4 47 136 -156 2 1464 301 93 0 36 chr12 115224234 115224290 -6033240 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1464 1597 251 71 26 chr12 115225263 115225796 -6031734 + RLTR40 LTR ERVK 172 728 -89 2 1464 19637 146 6 14 chr12 115226202 115230615 -6026915 - L1_Mus3 LINE L1 -6 6632 2263 2 1464 1404 221 333 21 chr12 115230613 115231043 -6026487 - L1VL2 LINE L1 -5633 789 206 2 1464 22 0 0 0 chr12 115231744 115231766 -6025764 + AT_rich Low_complexity Low_complexity 1 22 0 2 1464 25 83 0 0 chr12 115233968 115234028 -6023502 + AT_rich Low_complexity Low_complexity 1 60 0 2 1464 2075 171 3 3 chr12 115234642 115234993 -6022537 - Lx3C LINE L1 -224 6752 6402 2 1464 300 325 0 0 chr12 115236147 115236264 -6021266 + Lx9 LINE L1 6951 7067 -577 2 1464 189 131 32 16 chr12 115236333 115236395 -6021135 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1464 287 210 138 75 chr12 115236407 115236675 -6020855 + Lx9 LINE L1 7355 7639 -5 2 1464 1171 60 60 0 chr12 115236954 115237121 -6020409 - L1_Mus3 LINE L1 -6 6632 6456 2 1464 437 333 142 16 chr12 115237781 115238230 -6019300 + L1M2 LINE L1 4057 4562 -1581 2 1464 751 305 102 81 chr12 115238263 115238673 -6018857 + MTD LTR MaLR 1 419 0 2 1464 1460 269 83 17 chr12 115238864 115239336 -6018194 - RLTR20B3 LTR ERVK -53 524 22 2 1464 198 0 0 0 chr12 115239436 115239458 -6018072 + (ATG)n Simple_repeat Simple_repeat 1 22 0 2 1464 611 259 123 40 chr12 115239989 115240266 -6017264 - RMER12 LTR ERVK 0 1322 1023 2 1464 1134 95 10 20 chr12 115240282 115240486 -6017044 - MusHAL1 LINE L1 0 2712 2511 2 1464 783 132 176 0 chr12 115240486 115240645 -6016885 - B2_Mm2 SINE B2 -8 187 1 2 1464 593 230 0 0 chr12 115240654 115240793 -6016737 - L1_Mur3 LINE L1 -903 4977 4839 2 1464 241 262 0 97 chr12 115240796 115240910 -6016620 - L1_Mur3 LINE L1 -1173 4707 4605 2 1464 207 0 0 0 chr12 115240943 115240966 -6016564 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1464 7518 78 6 1 chr12 115241060 115242724 -6014806 - L1Md_F2 LINE L1 -10 6572 4903 2 1464 258 68 68 0 chr12 115242775 115242784 -6014746 + (CAAAA)n Simple_repeat Simple_repeat 3 11 0 2 1464 855 86 133 0 chr12 115242784 115242912 -6014618 + B1_Mus2 SINE Alu 3 147 0 2 1464 258 68 68 0 chr12 115242912 115242961 -6014569 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 2 1464 300 102 0 0 chr12 115243082 115243131 -6014399 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1464 548 296 59 52 chr12 115243131 115243420 -6014110 + RLTR15 LTR ERVK 4 294 -65 2 1464 1173 271 98 16 chr12 115243469 115243871 -6013659 + Lx6 LINE L1 6842 7540 -156 2 1464 7718 86 2 0 chr12 115243864 115245268 -6012262 - L1_Mus1 LINE L1 -2 6565 5157 2 1464 591 218 34 28 chr12 115245268 115245447 -6012083 + Lx6 LINE L1 7514 7693 -3 2 1464 213 240 0 0 chr12 115245461 115245511 -6012019 + A-rich Low_complexity Low_complexity 2 51 0 2 1464 21 36 0 0 chr12 115245787 115245815 -6011715 + AT_rich Low_complexity Low_complexity 1 28 0 2 1464 264 100 0 0 chr12 115246022 115246062 -6011468 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 1464 250 256 94 65 chr12 115246231 115246369 -6011161 + MYSERV6-int LTR ERVK 7179 7320 -1639 2 1464 567 0 0 0 chr12 115246435 115246498 -6011032 + (TTG)n Simple_repeat Simple_repeat 2 64 0 2 1464 1461 39 0 0 chr12 115246499 115246679 -6010851 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1464 819 101 0 0 chr12 115246679 115246798 -6010732 + (TCC)n Simple_repeat Simple_repeat 3 121 0 2 1464 409 264 52 74 chr12 115246801 115246835 -6010695 + RLTR19-int LTR ERVK 2659 2691 -3446 2 1464 3754 138 115 32 chr12 115246835 115247581 -6009949 + RLTR13C2 LTR ERVK 1 808 0 2 1464 409 264 52 74 chr12 115247581 115247775 -6009755 + RLTR19-int LTR ERVK 2692 2882 -3255 2 1464 803 274 50 73 chr12 115248332 115248773 -6008757 + RLTR19-int LTR ERVK 3529 3959 -2178 2 1464 3093 234 59 29 chr12 115249381 115249569 -6007961 + L1_Mur3 LINE L1 2791 2988 -2892 2 1464 468 35 0 0 chr12 115249569 115249627 -6007903 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1464 3093 234 59 29 chr12 115249627 115250556 -6006974 + L1_Mur3 LINE L1 2989 3941 -1939 2 1464 1243 92 48 11 chr12 115250808 115250994 -6006536 - B2_Mm2 SINE B2 -2 193 1 2 1464 25 31 0 0 chr12 115252067 115252099 -6005431 + AT_rich Low_complexity Low_complexity 1 32 0 2 1464 261 187 84 26 chr12 115252520 115252674 -6004856 + (CATAT)n Simple_repeat Simple_repeat 1 163 0 2 1464 300 169 86 26 chr12 115252786 115252938 -6004592 + (CATAT)n Simple_repeat Simple_repeat 3 163 0 2 1464 305 298 112 22 chr12 115253724 115253858 -6003672 + HAL1-3A_ME LINE L1 2282 2427 -431 2 1464 5362 30 6 0 chr12 115253870 115254506 -6003024 - MERVL-int LTR ERVL -4845 640 1 2 1464 3455 30 136 0 chr12 115254506 115254939 -6002591 - MT2_Mm LTR ERVL 0 493 2 2 1464 384 40 0 0 chr12 115254939 115254989 -6002541 + (CAAG)n Simple_repeat Simple_repeat 3 52 0 2 1464 649 102 19 0 chr12 115255136 115255244 -6002286 + (TC)n Simple_repeat Simple_repeat 1 110 0 3 1464 2624 189 83 26 chr12 115255259 115255839 -6001691 + RLTR21 LTR ERVK 1 613 -959 3 1464 10775 170 13 11 chr12 115255839 115258843 -5998687 - Lx LINE L1 -38 6616 3610 3 1464 1076 174 84 4 chr12 115258991 115259198 -5998332 - L1_Mur3 LINE L1 -2184 3696 3478 3 1464 222 37 0 0 chr12 115259198 115259225 -5998305 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1464 1076 174 84 4 chr12 115259225 115259254 -5998276 - L1_Mur3 LINE L1 -2403 3477 3443 3 1464 3485 83 4 42 chr12 115259258 115259762 -5997768 - L1_Mus2 LINE L1 0 6566 6082 3 1464 585 0 0 0 chr12 115259845 115259910 -5997620 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1464 1004 256 72 38 chr12 115259910 115260283 -5997247 + RLTR40 LTR ERVK 38 423 -394 3 1464 200 196 39 19 chr12 115260293 115260345 -5997185 + GA-rich Low_complexity Low_complexity 5 57 0 3 1464 411 318 82 53 chr12 115260915 115261197 -5996333 - Lx8 LINE L1 -5 7468 7179 3 1464 784 339 36 0 chr12 115261214 115261438 -5996092 + RMER12B LTR ERVK 1 232 -1172 3 1464 3062 205 0 11 chr12 115261438 115262073 -5995457 + L1_Mur2 LINE L1 4639 5266 -611 3 1464 346 301 32 32 chr12 115262044 115262202 -5995328 + L1VL2 LINE L1 28 185 -6150 3 1464 28679 128 13 11 chr12 115262327 115268397 -5989133 + L1_Mus2 LINE L1 522 6564 -2 3 1464 6791 179 33 7 chr12 115268406 115268934 -5988596 + Lx2 LINE L1 5252 5781 -102 3 1464 397 73 0 0 chr12 115268934 115268989 -5988541 + L1_Mus2 LINE L1 6510 6564 -2 3 1464 3462 83 0 13 chr12 115268988 115269466 -5988064 + L1Md_F2 LINE L1 6110 6581 -1 3 1464 6791 159 75 10 chr12 115269466 115269764 -5987766 + Lx2 LINE L1 5782 6087 -910 3 1464 3203 99 2 2 chr12 115269764 115270199 -5987331 - RLTR9B LTR ERVK 0 437 3 3 1464 6791 159 75 10 chr12 115270199 115270961 -5986569 + Lx2 LINE L1 6088 6923 -74 3 1464 22 0 0 0 chr12 115270964 115270986 -5986544 + AT_rich Low_complexity Low_complexity 1 22 0 3 1464 529 305 47 14 chr12 115271180 115271476 -5986054 - L1_Mur3 LINE L1 -6519 1193 888 3 1464 3601 101 4 2 chr12 115272827 115273343 -5984187 - Lx3_Mus LINE L1 0 7009 6493 3 1464 3071 117 2 13 chr12 115273343 115273809 -5983721 + Lx3_Mus LINE L1 6066 6526 -483 3 1464 187 54 26 26 chr12 115276590 115276628 -5980902 + (TAA)n Simple_repeat Simple_repeat 3 40 0 3 1464 1450 133 20 4 chr12 115277131 115277380 -5980150 - Lx3_Mus LINE L1 -780 6193 5941 3 1464 2556 150 9 110 chr12 115277385 115277960 -5979570 + L1_Mur1 LINE L1 4684 5200 -686 3 1464 692 296 83 102 chr12 115278456 115279057 -5978473 - RMER17B LTR ERVK -4 904 429 3 1464 279 0 0 0 chr12 115280275 115280306 -5977224 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1464 243 156 15 59 chr12 115280498 115280566 -5976964 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 3 1464 3803 47 0 2 chr12 115280916 115281385 -5976145 - L1Md_F3 LINE L1 -15 6569 6102 3 1464 893 214 4 6 chr12 115281477 115281714 -5975816 - L1_Mur2 LINE L1 -3621 2259 2032 3 1464 306 0 0 0 chr12 115281714 115281748 -5975782 - HAL1-3A_ME LINE L1 -848 2010 1977 3 1464 459 63 0 0 chr12 115281748 115281811 -5975719 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1464 282 219 0 12 chr12 115281813 115281896 -5975634 - L1_Mur2 LINE L1 -3837 2049 1968 3 1464 2493 178 17 16 chr12 115281893 115282470 -5975060 + Lx4B LINE L1 5520 6116 -942 3 1464 7387 159 15 38 chr12 115282472 115283609 -5973921 + Lx3B LINE L1 4484 5611 -275 3 1464 293 0 27 0 chr12 115283609 115283646 -5973884 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 1464 7387 159 15 38 chr12 115283646 115283672 -5973858 + Lx3B LINE L1 5612 5615 -271 3 1464 1115 55 21 0 chr12 115283672 115283817 -5973713 - B1_Mus1 SINE Alu 0 148 1 3 1464 7387 170 39 18 chr12 115283817 115284711 -5972819 + Lx3B LINE L1 5595 6524 -449 3 1464 1392 177 53 0 chr12 115284711 115284977 -5972553 + Lx4B LINE L1 6689 6968 -8 3 1464 22 80 0 0 chr12 115284977 115285027 -5972503 + AT_rich Low_complexity Low_complexity 1 50 0 3 1464 1005 107 0 0 chr12 115285176 115285316 -5972214 + B1_Mus2 SINE Alu 2 141 -6 3 1464 255 31 0 0 chr12 115285318 115285350 -5972180 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 1464 282 56 0 0 chr12 115285680 115285716 -5971814 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 1464 1138 239 62 87 chr12 115285736 115286093 -5971437 + ORR1B1 LTR MaLR 47 394 0 3 1464 3981 81 13 7 chr12 115288115 115288706 -5968824 + L1_Mus2 LINE L1 6013 6566 0 3 1464 849 83 0 0 chr12 115289088 115289220 -5968310 + (CA)n Simple_repeat Simple_repeat 2 133 0 3 1464 923 95 0 25 chr12 115289884 115290046 -5967484 + (CA)n Simple_repeat Simple_repeat 1 158 0 3 1464 1546 256 86 19 chr12 115291021 115291543 -5965987 + RLTR40 LTR ERVK 172 728 -89 3 1464 19831 149 7 9 chr12 115291949 115296287 -5961243 - L1_Mus3 LINE L1 -7 6631 2307 3 1464 407 194 43 0 chr12 115296295 115296388 -5961142 - L1VL2 LINE L1 -6116 219 123 3 1464 22 0 0 0 chr12 115297120 115297142 -5960388 + AT_rich Low_complexity Low_complexity 1 22 0 3 1464 242 251 78 39 chr12 115298961 115299106 -5958424 + L1M2 LINE L1 5651 5800 -500 3 1464 21 0 0 0 chr12 115299380 115299401 -5958129 + AT_rich Low_complexity Low_complexity 1 21 0 3 1464 216 0 0 0 chr12 115299545 115299569 -5957961 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 1464 28 61 0 0 chr12 115300651 115300700 -5956830 + AT_rich Low_complexity Low_complexity 1 49 0 3 1464 31 26 0 0 chr12 115300889 115300927 -5956603 + AT_rich Low_complexity Low_complexity 1 38 0 3 1464 423 169 8 16 chr12 115300944 115301070 -5956460 + (TA)n Simple_repeat Simple_repeat 1 125 0 3 1464 554 254 132 120 chr12 115301829 115301943 -5955587 + Lx4B LINE L1 6805 6906 -152 3 1464 3090 143 70 6 chr12 115301943 115302470 -5955060 - Lx LINE L1 -12 6642 6082 3 1464 554 254 132 120 chr12 115302470 115302605 -5954925 + Lx4B LINE L1 6907 7057 -1 3 1464 1025 121 6 25 chr12 115302728 115302889 -5954641 - MusHAL1 LINE L1 -2990 364 207 3 1464 988 120 80 40 chr12 115302890 115303000 -5954530 - MusHAL1 LINE L1 -637 2075 1949 3 1464 360 0 0 0 chr12 115303000 115303040 -5954490 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1464 988 120 80 40 chr12 115303040 115303154 -5954376 - MusHAL1 LINE L1 -764 1948 1842 3 1464 8084 155 32 1 chr12 115303150 115304510 -5953020 + Lx2 LINE L1 5596 6997 0 3 1464 2232 142 14 51 chr12 115305189 115305620 -5951910 - BGLII_Mus LTR ERVK -7 415 1 3 1464 2798 86 15 5 chr12 115306120 115306516 -5951014 + MTB LTR MaLR 1 400 0 3 1464 22 0 0 0 chr12 115308302 115308324 -5949206 + AT_rich Low_complexity Low_complexity 1 22 0 3 1464 4855 102 22 14 chr12 115309405 115310130 -5947400 + L1_Mm LINE L1 5080 5810 -73 3 1464 325 336 51 29 chr12 115310306 115310444 -5947086 - RSINE1 SINE B4 -6 159 19 3 1464 286 233 90 42 chr12 115310741 115310907 -5946623 - L1M4 LINE L1 -1288 4858 4685 3 1464 1487 54 5 0 chr12 115310940 115311126 -5946404 + B2_Mm1t SINE B2 1 187 -6 3 1464 231 203 0 0 chr12 115311464 115311528 -5946002 + T-rich Low_complexity Low_complexity 2 65 0 3 1464 9368 191 43 53 chr12 115313020 115314020 -5943510 - L1_Mur2 LINE L1 -2256 5626 4658 3 1464 189 0 0 0 chr12 115314020 115314041 -5943489 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 1464 9368 189 43 54 chr12 115314041 115314182 -5943348 - L1_Mur2 LINE L1 -1220 4657 4529 3 1464 1152 55 0 0 chr12 115314182 115314328 -5943202 + B1_Mus2 SINE Alu 2 147 0 3 1464 9368 189 43 54 chr12 115314328 115314654 -5942876 - L1_Mur2 LINE L1 -1349 4528 4204 3 1464 308 94 0 19 chr12 115314654 115314708 -5942822 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1464 9368 189 43 54 chr12 115314708 115315608 -5941922 - L1_Mur2 LINE L1 -1674 4203 3248 3 1464 2428 193 36 15 chr12 115316600 115317078 -5940452 + Lx2B LINE L1 6505 6992 -8 3 1464 22 0 0 0 chr12 115317199 115317221 -5940309 + AT_rich Low_complexity Low_complexity 1 22 0 3 1464 978 135 0 0 chr12 115317467 115317608 -5939922 + B1_Mus1 SINE Alu 2 142 -6 3 1464 22 56 0 0 chr12 115317735 115317771 -5939759 + AT_rich Low_complexity Low_complexity 1 36 0 3 1464 708 291 77 33 chr12 115317927 115318064 -5939466 + L1M3 LINE L1 3640 3772 -2368 3 1464 333 68 0 0 chr12 115318064 115318108 -5939422 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1464 708 291 77 33 chr12 115318108 115318333 -5939197 + L1M3 LINE L1 3773 4018 -2122 3 1464 4444 142 3 3 chr12 115318719 115319413 -5938117 + L1_Mus4 LINE L1 5901 6594 -42 3 1464 6909 88 23 3 chr12 115319421 115320381 -5937149 + L1_Mus2 LINE L1 5587 6565 -1 3 1464 233 227 43 64 chr12 115320731 115320825 -5936705 + L1_Mur3 LINE L1 1463 1554 -4326 3 1464 548 295 89 0 chr12 115320829 115321019 -5936511 + MTD LTR MaLR 208 414 -5 3 1464 784 297 44 36 chr12 115321038 115321649 -5935881 + L1_Mur3 LINE L1 2719 3334 -2546 3 1464 2539 259 19 6 chr12 115321649 115322407 -5935123 + Lx4B LINE L1 6032 6840 -160 3 1464 198 192 0 0 chr12 115322458 115322510 -5935020 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1464 23 54 0 0 chr12 115322531 115322568 -5934962 + AT_rich Low_complexity Low_complexity 1 37 0 3 1464 446 376 47 6 chr12 115322995 115323359 -5934171 - MERVL-int LTR ERVL -503 4982 4604 3 1464 228 277 81 46 chr12 115323462 115323549 -5933981 - Charlie14a DNA MER1_type -86 1078 989 3 1464 501 308 77 35 chr12 115323850 115324109 -5933421 - RMER5 LTR ERV1 -9 525 256 3 1464 195 100 0 0 chr12 115324122 115324152 -5933378 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3 1464 1512 255 139 13 chr12 115324153 115324429 -5933101 - Lx4B LINE L1 0 7058 6761 3 1464 780 11 0 0 chr12 115324429 115324518 -5933012 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 1464 1512 263 125 16 chr12 115324518 115324807 -5932723 - Lx4B LINE L1 -298 6760 6429 3 1464 627 214 57 0 chr12 115324800 115324959 -5932571 + Lx5 LINE L1 6286 6453 -597 3 1464 230 288 133 18 chr12 115327515 115327628 -5929902 - Lx5 LINE L1 0 7050 6925 3 1464 1479 59 0 2 chr12 115328396 115328603 -5928927 - ORR1A0 LTR MaLR 0 346 126 3 1464 751 350 100 12 chr12 115328900 115329311 -5928219 + RMER1C Other Other 368 814 -528 3 1464 22 0 0 0 chr12 115331089 115331111 -5926419 + AT_rich Low_complexity Low_complexity 1 22 0 3 1464 1598 184 57 6 chr12 115331201 115331534 -5925996 - Lx2A1 LINE L1 -3 7005 6656 3 1464 245 386 61 12 chr12 115333334 115333499 -5924031 + B3A SINE B2 10 182 -16 3 1464 2047 240 38 11 chr12 115334531 115335199 -5922331 - Lx2B LINE L1 -1065 5935 5238 3 1464 1775 119 7 0 chr12 115335203 115335481 -5922049 - L1_Mus3 LINE L1 -1 6637 6358 3 1464 988 270 38 4 chr12 115335630 115335868 -5921662 + RMER13B LTR ERVK 624 869 -39 3 1464 497 16 16 0 chr12 115335912 115335974 -5921556 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 3 1464 33 56 0 0 chr12 115336590 115336644 -5920886 + AT_rich Low_complexity Low_complexity 1 54 0 4 1464 30228 92 4 8 chr12 115336897 115341990 -5915540 + L1Md_F2 LINE L1 515 5584 -299 4 1464 7558 74 0 3 chr12 115341992 115342976 -5914554 + L1Md_F2 LINE L1 5587 6567 -15 4 1465 185 79 79 0 chr12 115343424 115343462 -5914068 + (TATAA)n Simple_repeat Simple_repeat 4 44 0 4 1465 1751 122 11 4 chr12 115343872 115344151 -5913379 - L1_Mus3 LINE L1 -6 6632 6352 4 1465 189 74 0 0 chr12 115344812 115344839 -5912691 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1465 722 93 352 0 chr12 115346077 115346239 -5911291 + L1_Mus3 LINE L1 6414 6632 -6 4 1465 1236 219 77 6 chr12 115346309 115346635 -5910895 - Lx2A1 LINE L1 -4 7004 6656 4 1465 250 383 52 40 chr12 115348397 115348571 -5908959 + B3A SINE B2 10 185 -13 4 1465 2243 233 52 14 chr12 115349567 115350234 -5907296 - Lx2A1 LINE L1 -1065 5935 5234 4 1465 1753 124 14 0 chr12 115350234 115350516 -5907014 - L1_Mus3 LINE L1 -1 6637 6352 4 1465 934 296 22 0 chr12 115350661 115350884 -5906646 + RMER13B LTR ERVK 624 851 -57 4 1465 204 125 0 0 chr12 115350917 115350949 -5906581 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 4 1465 247 49 49 0 chr12 115350949 115350990 -5906540 + (TTATA)n Simple_repeat Simple_repeat 5 47 0 4 1465 593 353 16 4 chr12 115351231 115351473 -5906057 - Lx6 LINE L1 -83 7377 7133 4 1465 34069 48 1 16 chr12 115351472 115356625 -5900905 + L1Md_T LINE L1 511 5586 -297 4 1465 8308 40 0 0 chr12 115356627 115357621 -5899909 + L1Md_T LINE L1 5589 6582 0 4 1465 517 314 110 8 chr12 115357876 115358203 -5899327 - Lx6 LINE L1 -683 6367 5982 4 1465 823 248 73 75 chr12 115358248 115358619 -5898911 + L1_Mur2 LINE L1 5500 5869 -8 4 1465 471 18 0 0 chr12 115360150 115360206 -5897324 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1465 471 324 65 36 chr12 115360742 115361078 -5896452 + Lx8 LINE L1 7106 7451 -22 4 1465 2475 281 58 59 chr12 115361163 115362068 -5895462 + RMER13B LTR ERVK 1 904 -4 4 1465 1017 219 178 40 chr12 115362288 115362636 -5894894 - RLTR9E LTR ERVK 0 409 14 4 1465 356 102 27 68 chr12 115362638 115362712 -5894818 - ETnERV2-int LTR ERVK -7 7399 7329 4 1465 827 191 77 28 chr12 115362712 115363061 -5894469 - RLTR13B1 LTR ERVK -365 537 118 4 1465 5948 145 23 19 chr12 115363061 115364201 -5893329 - ETnERV2-int LTR ERVK -236 7170 6101 4 1465 2351 176 4 48 chr12 115364199 115364677 -5892853 - ETnERV2-int LTR ERVK -1953 2891 2437 4 1465 4357 64 12 7 chr12 115364677 115365244 -5892286 - L1Md_F2 LINE L1 -1 6581 6012 4 1465 2351 176 4 48 chr12 115365244 115365301 -5892229 - ETnERV2-int LTR ERVK -2408 2436 2380 4 1465 225 0 0 0 chr12 115365301 115365326 -5892204 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 4 1465 1543 234 135 70 chr12 115365326 115365575 -5891955 - RLTR45-int LTR ERVK -2344 4900 4627 4 1465 679 260 28 8 chr12 115367570 115367815 -5889715 - Lx7 LINE L1 -368 5810 5556 4 1465 522 0 0 0 chr12 115367837 115367895 -5889635 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 4 1465 1663 245 37 4 chr12 115367927 115368386 -5889144 - Lx4B LINE L1 -567 6491 6018 4 1465 1008 180 25 0 chr12 115368384 115368584 -5888946 + Lx4B LINE L1 5816 6020 -1038 4 1465 1570 227 72 42 chr12 115368918 115369277 -5888253 - RMER20B LTR ERVK 0 627 258 4 1465 1747 228 30 16 chr12 115369278 115370051 -5887479 - Lx4B LINE L1 -1029 6021 5224 4 1465 2193 274 81 16 chr12 115370124 115370918 -5886612 + Lx5 LINE L1 6159 7045 -13 4 1465 189 121 0 0 chr12 115370920 115370953 -5886577 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 4 1465 1313 241 7 4 chr12 115370958 115371233 -5886297 - RMER20B LTR ERVK -351 276 1 4 1465 319 273 0 0 chr12 115371239 115371305 -5886225 - ID_B1 SINE B4 -79 145 80 4 1465 868 302 49 12 chr12 115371306 115371631 -5885899 - MTE2b LTR MaLR -5 374 38 4 1465 404 315 137 63 chr12 115371981 115372316 -5885214 + MTD LTR MaLR 19 418 -1 4 1465 989 214 13 0 chr12 115374183 115374421 -5883109 + L1_Mur2 LINE L1 3482 3722 -2155 4 1465 1781 206 2 57 chr12 115374426 115374848 -5882682 + L1VL1 LINE L1 208 606 -5816 4 1465 630 346 38 32 chr12 115375701 115376096 -5881434 + RMER1C Other Other 416 783 -559 4 1465 22 0 0 0 chr12 115377879 115377901 -5879629 + AT_rich Low_complexity Low_complexity 1 22 0 4 1465 1449 183 83 6 chr12 115377991 115378316 -5879214 - Lx2A1 LINE L1 -3 7005 6656 4 1465 297 362 55 44 chr12 115380088 115380270 -5877260 + B3A SINE B2 2 185 -13 4 1465 2021 250 50 3 chr12 115381314 115381766 -5875764 - Lx2A1 LINE L1 -1065 5935 5444 4 1465 216 0 0 0 chr12 115381766 115381790 -5875740 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1465 2021 249 53 3 chr12 115381790 115381989 -5875541 - Lx2A1 LINE L1 -434 5443 5244 4 1465 1590 140 11 0 chr12 115381989 115382260 -5875270 - L1_Mus3 LINE L1 -4 6634 6361 4 1465 957 266 27 0 chr12 115382412 115382634 -5874896 + RMER13B LTR ERVK 624 851 -57 4 1465 215 154 26 0 chr12 115382660 115382699 -5874831 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 4 1465 206 62 31 0 chr12 115382699 115382731 -5874799 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 4 1465 180 163 0 0 chr12 115382730 115382773 -5874757 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1465 858 320 104 27 chr12 115382940 115383476 -5874054 - Lx6 LINE L1 -46 7414 6474 4 1465 515 328 112 1 chr12 115383464 115383779 -5873751 - Lx6 LINE L1 -683 6367 5993 4 1465 940 242 61 43 chr12 115383841 115384287 -5873243 + Lx5 LINE L1 5506 5950 -1100 4 1465 1515 28 0 0 chr12 115384500 115384680 -5872850 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1465 1587 174 82 14 chr12 115384680 115384797 -5872733 + RMER17A LTR ERVK 317 444 -307 4 1465 198 0 0 0 chr12 115384797 115384819 -5872711 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1465 1587 174 82 14 chr12 115384819 115385107 -5872423 + RMER17A LTR ERVK 445 750 -1 4 1465 5244 215 62 2 chr12 115385107 115386272 -5871258 - MERVK26-int LTR ERVK -4005 2914 1680 4 1465 1777 273 82 92 chr12 115386509 115387301 -5870229 - RMER17B LTR ERVK -174 784 1 4 1465 1713 251 104 13 chr12 115387313 115387861 -5869669 - MERVK26-int LTR ERVK -5247 1672 1075 4 1465 2669 241 77 24 chr12 115387874 115388735 -5868795 - MERVK26-int LTR ERVK -5948 971 66 4 1465 4576 240 29 21 chr12 115388993 115390253 -5867277 - MERVK26-int LTR ERVK -3285 3634 2365 4 1465 246 289 87 34 chr12 115392124 115392332 -5865198 - L1M2 LINE L1 -740 5557 5339 4 1465 420 213 54 23 chr12 115392850 115392920 -5864610 + Lx4B LINE L1 6922 6992 -66 4 1465 3395 23 8 0 chr12 115392920 115393313 -5864217 - MTA_Mm LTR MaLR 0 396 1 4 1465 420 213 54 23 chr12 115393313 115393372 -5864158 + Lx4B LINE L1 6993 7055 -3 4 1465 3638 175 21 18 chr12 115393372 115394385 -5863145 - Lx2B LINE L1 -660 6340 5321 4 1465 1557 224 30 9 chr12 115394685 115395018 -5862512 - ORR1B2 LTR MaLR -24 343 4 4 1465 622 214 9 0 chr12 115395456 115395568 -5861962 - B3 SINE B2 -86 130 18 4 1465 3158 33 3 0 chr12 115396953 115397317 -5860213 - RLTR10B2 LTR ERVK 0 365 1 4 1465 1066 188 135 4 chr12 115397360 115397590 -5859940 + IAPEY3_LTR LTR ERVK 1 260 -72 4 1465 15630 88 14 9 chr12 115397590 115400023 -5857507 + IAPEY3-int LTR ERVK 5184 7581 0 4 1465 1436 187 88 3 chr12 115400023 115400329 -5857201 + IAPEY3_LTR LTR ERVK 1 332 0 4 1465 1345 188 61 7 chr12 115401556 115401835 -5855695 - RMER4A LTR ERVK -164 302 9 4 1465 2653 221 28 7 chr12 115402546 115403156 -5854374 + Lx2B LINE L1 6232 6854 -146 4 1465 5195 75 4 1 chr12 115403160 115403882 -5853648 - L1_Mus2 LINE L1 -135 6431 5708 4 1465 2809 103 2 2 chr12 115403882 115404299 -5853231 + L1_Mus2 LINE L1 5279 5695 -188 4 1465 2969 222 36 17 chr12 115404747 115405405 -5852125 + RLTR21 LTR ERVK 1 671 -901 4 1465 1608 214 39 3 chr12 115405409 115405797 -5851733 - Lx2B LINE L1 -282 6718 6317 4 1465 3043 69 5 2 chr12 115405797 115406192 -5851338 + MTA_Mm LTR MaLR 1 396 0 4 1465 7383 87 6 71 chr12 115406192 115407366 -5850164 + MTA_Mm-int LTR MaLR 1 1098 0 4 1465 3113 59 5 2 chr12 115407366 115407759 -5849771 + MTA_Mm LTR MaLR 1 394 -2 4 1465 788 161 7 0 chr12 115408548 115408589 -5848941 + polypyrimidine Low_complexity Low_complexity 118 159 0 4 1465 1258 73 6 6 chr12 115408589 115408769 -5848761 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1465 788 161 7 0 chr12 115408769 115408882 -5848648 + polypyrimidine Low_complexity Low_complexity 5 117 0 4 1465 486 241 64 29 chr12 115409185 115409356 -5848174 + RLTR40 LTR ERVK 177 353 -464 4 1465 672 239 17 134 chr12 115409347 115409473 -5848057 + RLTR40 LTR ERVK 463 571 -246 4 1465 414 0 0 0 chr12 115409473 115409519 -5848011 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1465 672 239 17 134 chr12 115409519 115409682 -5847848 + RLTR40 LTR ERVK 572 718 -99 4 1465 2492 159 65 8 chr12 115410596 115411072 -5846458 + L1VL2 LINE L1 116 617 -5718 4 1465 4648 78 0 0 chr12 115411072 115411674 -5845856 - L1Md_T LINE L1 -8 6574 5973 4 1465 2492 159 65 8 chr12 115411674 115411717 -5845813 + L1VL2 LINE L1 618 663 -5672 4 1465 812 196 16 11 chr12 115411717 115411908 -5845622 + MusHAL1 LINE L1 857 1048 -1664 4 1465 3041 51 14 0 chr12 115411907 115412320 -5845210 - L1_Mm LINE L1 -1536 4347 3929 4 1465 7041 56 12 9 chr12 115412322 115413229 -5844301 + L1Md_F2 LINE L1 5669 6578 -4 4 1465 1367 78 0 0 chr12 115413315 115413495 -5844035 + MTA_Mm LTR MaLR 217 396 0 4 1465 1033 110 7 0 chr12 115415495 115415640 -5841890 - B1_Mus1 SINE Alu -1 147 2 4 1465 1675 128 44 0 chr12 115415926 115416200 -5841330 - L1_Mus3 LINE L1 -7 6631 6346 4 1465 222 239 0 0 chr12 115416576 115416622 -5840908 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 4 1465 606 122 0 0 chr12 115417219 115417317 -5840213 + (CA)n Simple_repeat Simple_repeat 2 99 0 4 1465 1295 80 11 6 chr12 115417318 115417494 -5840036 + B2_Mm1t SINE B2 1 177 -16 4 1465 22 26 0 25 chr12 115418016 115418028 -5839502 + AT_rich Low_complexity Low_complexity 1 12 0 4 1465 2317 144 5 50 chr12 115418028 115418444 -5839086 - Lx2A LINE L1 -6 7002 6606 4 1465 22 26 0 25 chr12 115418444 115418471 -5839059 + AT_rich Low_complexity Low_complexity 1 27 0 4 1465 26 30 0 0 chr12 115418734 115418767 -5838763 + AT_rich Low_complexity Low_complexity 1 33 0 4 1465 250 307 0 10 chr12 115418878 115418980 -5838550 - Lx7 LINE L1 -376 7320 7220 4 1465 853 296 57 36 chr12 115419049 115419350 -5838180 + MTD LTR MaLR 113 419 0 4 1465 24 53 0 0 chr12 115420248 115420286 -5837244 + AT_rich Low_complexity Low_complexity 1 38 0 4 1465 39 0 0 0 chr12 115420345 115420384 -5837146 + AT_rich Low_complexity Low_complexity 1 39 0 4 1465 692 127 0 17 chr12 115420402 115420522 -5837008 + (CATATA)n Simple_repeat Simple_repeat 2 119 0 4 1465 293 130 0 0 chr12 115421352 115421398 -5836132 + Lx4B LINE L1 6811 6856 -202 4 1465 272 260 9 74 chr12 115421419 115421527 -5836003 + Lx4B LINE L1 6954 7054 -4 4 1465 24 0 0 0 chr12 115421647 115421671 -5835859 + AT_rich Low_complexity Low_complexity 1 24 0 4 1465 2223 202 75 55 chr12 115422059 115422620 -5834910 + RMER4B LTR ERVK 13 584 -1 4 1465 6834 184 32 35 chr12 115422737 115424663 -5832867 + Lx4A LINE L1 4318 6245 -813 4 1465 343 145 24 0 chr12 115424824 115424907 -5832623 + CT-rich Low_complexity Low_complexity 2 86 0 4 1465 1398 177 4 0 chr12 115425033 115425276 -5832254 - ORR1A3-int LTR MaLR -1571 392 149 5 1465 376 169 98 0 chr12 115425260 115425346 -5832184 + ORR1A4 LTR MaLR 272 419 0 5 1465 651 164 156 0 chr12 115425352 115425474 -5832056 - B1_Mur3 SINE Alu 0 149 9 5 1465 612 227 31 0 chr12 115425510 115425638 -5831892 + B1_Mus1 SINE Alu 10 141 -7 5 1465 2072 139 119 0 chr12 115425984 115426379 -5831151 + RLTR47_MM LTR ERV1 1 442 -90 5 1465 344 131 394 0 chr12 115426368 115426467 -5831063 - B2_Mm2 SINE B2 -1 194 57 5 1465 1040 147 11 6 chr12 115426481 115426659 -5830871 - B2_Mm1t SINE B2 -13 180 2 5 1465 233 282 28 0 chr12 115427943 115428014 -5829516 + PB1D10 SINE Alu 41 113 -4 5 1465 776 97 23 0 chr12 115428430 115428558 -5828972 + L1Md_F2 LINE L1 5441 5585 -298 5 1465 7688 62 9 7 chr12 115428559 115429553 -5827977 + L1Md_F2 LINE L1 5587 6582 0 5 1465 6662 86 60 1 chr12 115430521 115431818 -5825712 + L1_Mus1 LINE L1 5221 6565 -2 5 1465 21 0 0 0 chr12 115432023 115432044 -5825486 + AT_rich Low_complexity Low_complexity 1 21 0 5 1465 24 0 0 0 chr12 115432332 115432356 -5825174 + AT_rich Low_complexity Low_complexity 1 24 0 5 1465 246 398 0 0 chr12 115433001 115433094 -5824436 - MT2A LTR ERVL -133 400 308 5 1465 751 313 74 13 chr12 115433280 115433578 -5823952 + ORR1D1 LTR MaLR 59 374 0 5 1465 26 30 0 0 chr12 115433696 115433729 -5823801 + AT_rich Low_complexity Low_complexity 1 33 0 5 1465 3119 196 3 13 chr12 115433738 115434368 -5823162 - Lx3B LINE L1 -3 6970 6347 5 1465 282 288 62 31 chr12 115435635 115435861 -5821669 - L1M1 LINE L1 -673 5627 5395 5 1465 932 123 0 6 chr12 115436805 115436961 -5820569 + (TA)n Simple_repeat Simple_repeat 2 156 0 5 1465 26 0 0 0 chr12 115438214 115438240 -5819290 + AT_rich Low_complexity Low_complexity 1 26 0 5 1465 463 304 8 23 chr12 115438550 115438678 -5818852 - RMER13B LTR ERVK 0 908 783 5 1465 6290 189 49 52 chr12 115438961 115441576 -5815954 + Lx LINE L1 4038 6645 -9 5 1465 246 62 0 0 chr12 115441577 115441609 -5815921 + (CAGAA)n Simple_repeat Simple_repeat 4 35 0 5 1465 450 127 0 0 chr12 115441612 115441683 -5815847 + (CAA)n Simple_repeat Simple_repeat 2 72 0 5 1465 5693 72 1 0 chr12 115442425 115443194 -5814336 + L1Md_F2 LINE L1 4817 5586 -297 5 1465 7955 51 3 3 chr12 115443194 115444186 -5813344 + L1Md_F2 LINE L1 5587 6578 -4 5 1465 3459 29 58 0 chr12 115445477 115445889 -5811641 - RLTR10C LTR ERVK 0 436 1 5 1465 29 47 0 0 chr12 115446868 115446911 -5810619 + AT_rich Low_complexity Low_complexity 1 43 0 5 1465 758 210 0 6 chr12 115448003 115448185 -5809345 - L1_Mur2 LINE L1 -3632 2245 2065 5 1465 386 88 15 0 chr12 115448188 115448256 -5809274 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1465 221 128 51 0 chr12 115448256 115448295 -5809235 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 5 1465 5562 199 12 15 chr12 115448928 115450463 -5807067 + Lx4A LINE L1 4588 6121 -937 5 1465 7369 154 17 4 chr12 115450460 115452483 -5805047 + Lx3B LINE L1 4484 6524 -449 5 1465 1320 185 64 0 chr12 115452483 115452748 -5804782 + Lx4A LINE L1 6689 6970 -6 5 1465 24 32 0 0 chr12 115452948 115452979 -5804551 + AT_rich Low_complexity Low_complexity 1 31 0 5 1465 455 245 52 37 chr12 115452987 115453027 -5804503 - Lx2B LINE L1 0 7000 6957 5 1465 1386 154 8 4 chr12 115453027 115453274 -5804256 - Lx LINE L1 -7 6647 6400 5 1465 455 245 52 37 chr12 115453274 115453424 -5804106 - Lx2B LINE L1 -44 6956 6807 5 1465 333 0 0 0 chr12 115453661 115453698 -5803832 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1465 228 310 56 19 chr12 115454357 115454518 -5803012 + L1M2 LINE L1 5761 5927 -364 5 1465 207 0 0 0 chr12 115455108 115455131 -5802399 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1465 329 230 0 26 chr12 115455712 115455788 -5801742 + ORR1A4 LTR MaLR 1 74 -255 5 1465 198 71 0 0 chr12 115456458 115456486 -5801044 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1465 7369 210 94 8 chr12 115457252 115459905 -5797625 - MERVK26-int LTR ERVK -1686 5233 2353 5 1465 21 71 0 0 chr12 115460406 115460448 -5797082 + AT_rich Low_complexity Low_complexity 1 42 0 5 1465 22 0 0 0 chr12 115460500 115460522 -5797008 + AT_rich Low_complexity Low_complexity 1 22 0 5 1465 247 200 130 22 chr12 115462501 115462593 -5794937 + Lx2B LINE L1 6881 6982 -18 5 1465 3403 196 43 1 chr12 115462596 115463794 -5793736 - Lx2 LINE L1 -657 6340 5092 5 1465 1363 246 28 8 chr12 115464086 115464446 -5793084 - ORR1B2 LTR MaLR 0 367 1 5 1465 29 0 0 0 chr12 115464530 115464559 -5792971 + AT_rich Low_complexity Low_complexity 1 29 0 5 1465 4554 39 1 0 chr12 115464600 115465254 -5792276 - L1Md_F2 LINE L1 -630 5952 5298 5 1465 602 198 9 0 chr12 115465492 115465598 -5791932 - B3 SINE B2 -86 130 24 5 1465 2739 97 16 31 chr12 115466373 115466798 -5790732 - L1Md_F2 LINE L1 -2 6580 6162 5 1465 1295 82 28 0 chr12 115466800 115466982 -5790548 + L1_Mm LINE L1 5386 5572 -311 5 1465 7386 116 42 11 chr12 115467105 115468286 -5789244 - Lx3_Mus LINE L1 -10 6999 5783 5 1465 10676 109 23 13 chr12 115468693 115470479 -5787051 - L1_Mur1 LINE L1 -82 5804 4001 5 1465 3626 91 16 2 chr12 115470483 115470991 -5786539 - L1_Mus1 LINE L1 0 6567 6053 5 1465 11341 76 9 0 chr12 115471537 115473315 -5784215 - L1Md_F2 LINE L1 -519 6063 4274 5 183 39416 9 0 1 chr12 115473311 115480096 -5777434 - L1Md_A LINE L1 0 6582 1 5 1466 19791 95 6 14 chr12 115480095 115481235 -5776295 - L1Md_F2 LINE L1 -1595 4288 3159 5 1466 2770 58 6 3 chr12 115481235 115481579 -5775951 + IAPLTR4 LTR ERVK 1 345 0 5 1466 19791 96 7 14 chr12 115481579 115483601 -5773929 - L1Md_F2 LINE L1 -2725 3158 1150 5 1466 780 32 0 0 chr12 115483601 115483696 -5773834 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 5 1466 3816 132 13 19 chr12 115483696 115484288 -5773242 - L1Md_F2 LINE L1 -5467 1149 559 5 1466 16183 115 14 16 chr12 115484285 115485742 -5771788 - L1_Mur1 LINE L1 -1865 4021 2571 5 1466 297 0 0 0 chr12 115485742 115485775 -5771755 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1466 910 98 45 0 chr12 115485777 115485909 -5771621 - B1_Mus1 SINE Alu -9 139 2 5 1466 16183 136 58 16 chr12 115485909 115487927 -5769603 - L1_Mur1 LINE L1 -3316 2570 211 5 1466 22 0 0 0 chr12 115488559 115488581 -5768949 + AT_rich Low_complexity Low_complexity 1 22 0 5 1466 364 284 22 50 chr12 115488867 115489011 -5768519 + ORR1D2 LTR MaLR 45 183 -191 5 1466 21 36 0 0 chr12 115489011 115489039 -5768491 + AT_rich Low_complexity Low_complexity 1 28 0 5 1466 4480 118 0 12 chr12 115489039 115489716 -5767814 - L1Md_F2 LINE L1 -10 6572 5904 5 1466 247 83 0 0 chr12 115489717 115489753 -5767777 + L1_Mm LINE L1 5266 5301 -582 5 1466 982 123 0 46 chr12 115489753 115489906 -5767624 + B1_Mm SINE Alu 1 146 -1 5 1466 4439 76 0 7 chr12 115489915 115490534 -5766996 + L1_Mm LINE L1 5269 5883 0 5 1466 494 306 82 5 chr12 115490561 115490745 -5766785 + ORR1D2 LTR MaLR 173 370 0 5 1466 28 29 0 0 chr12 115490869 115490904 -5766626 + AT_rich Low_complexity Low_complexity 1 35 0 5 1466 2964 200 9 17 chr12 115490913 115491545 -5765985 - Lx3B LINE L1 0 6973 6347 5 1466 251 271 81 56 chr12 115492795 115493030 -5764500 - L1_Rod LINE L1 -272 5575 5355 5 1466 421 130 0 42 chr12 115493646 115493718 -5763812 + RLTR9C LTR ERVK 323 391 -2 5 1466 2840 124 9 2 chr12 115494914 115495349 -5762181 - Lx3_Mus LINE L1 0 7009 6572 5 1466 2741 98 120 0 chr12 115495349 115495900 -5761630 + L1_Mur1 LINE L1 1033 1649 -4237 5 1466 482 0 0 17 chr12 115496325 115496384 -5761146 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1466 22 0 0 0 chr12 115496451 115496473 -5761057 + AT_rich Low_complexity Low_complexity 1 22 0 5 1466 674 24 12 0 chr12 115496871 115496955 -5760575 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1466 697 215 0 0 chr12 115497052 115497182 -5760348 + L1VL4 LINE L1 196 325 -5977 5 1466 8981 121 17 10 chr12 115497181 115499475 -5758055 + L1_Mus2 LINE L1 4219 6528 -38 5 1466 21 0 0 0 chr12 115499481 115499502 -5758028 + AT_rich Low_complexity Low_complexity 1 21 0 5 1466 619 315 100 21 chr12 115499503 115499782 -5757748 + ORR1D1 LTR MaLR 74 374 0 5 1466 25 31 0 0 chr12 115499896 115499928 -5757602 + AT_rich Low_complexity Low_complexity 1 32 0 5 1466 2497 223 7 33 chr12 115500001 115500584 -5756946 - Lx3B LINE L1 -59 6914 6347 1 1466 371 261 48 201 chr12 115504750 115504999 -5752531 + RMER10A LTR ERVL 202 412 -30 2 1466 236 219 0 15 chr12 115505467 115505532 -5751998 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1466 387 0 0 0 chr12 115505532 115505575 -5751955 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1466 218 222 70 58 chr12 115506520 115506606 -5750924 + ID_B1 SINE B4 5 91 -133 5 1466 513 0 0 0 chr12 115506982 115507039 -5750491 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1466 900 43 0 0 chr12 115507039 115507155 -5750375 + (GA)n Simple_repeat Simple_repeat 2 118 0 7 1466 450 0 0 0 chr12 115508230 115508280 -5749250 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1466 558 0 0 0 chr12 115508284 115508346 -5749184 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1466 4062 206 63 48 chr12 115508407 115508706 -5748824 - RLTR21 LTR ERVK -524 1048 755 1 1466 1199 62 7 0 chr12 115508706 115508852 -5748678 + B1_Mm SINE Alu 1 147 0 1 1466 4062 206 63 48 chr12 115508852 115509584 -5747946 - RLTR21 LTR ERVK -818 754 1 1 1466 598 281 6 6 chr12 115509803 115509964 -5747566 - Lx7 LINE L1 -917 6779 6619 1 1466 521 350 88 37 chr12 115510065 115510551 -5746979 + Lx9 LINE L1 6916 7426 -218 1 1466 537 16 0 0 chr12 115510566 115510628 -5746902 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1466 5321 252 16 14 chr12 115512304 115513800 -5743730 - Lx4B LINE L1 -118 6940 5437 1 1466 1675 151 94 0 chr12 115513802 115514101 -5743429 + IAPEY3_LTR LTR ERVK 1 327 -5 1 1466 2828 184 40 7 chr12 115514104 115514678 -5742852 - Lx4B LINE L1 -437 5440 4848 1 1466 1820 197 44 0 chr12 115514712 115515073 -5742457 - Lx3C LINE L1 -26 6950 6574 1 1466 880 113 0 0 chr12 115515078 115515202 -5742328 - B1_Mus1 SINE Alu -5 143 20 1 1466 371 239 47 76 chr12 115515201 115515373 -5742157 + RLTR22_Mus LTR ERVK 662 828 -980 1 1466 670 263 58 27 chr12 115515358 115515581 -5741949 + RLTR22_Mur LTR ERVK 1068 1297 -551 2 1466 363 44 0 0 chr12 115515636 115515681 -5741849 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1466 391 290 44 156 chr12 115515682 115515890 -5741640 + RLTR22_Mus LTR ERVK 1398 1556 -252 1 1466 3407 195 27 7 chr12 115515932 115516633 -5740897 + Lx3C LINE L1 6068 6782 -194 2 1466 1270 68 0 0 chr12 115516633 115516796 -5740734 + RLTRETN_Mm LTR ERVK 1 163 -159 2 1466 24098 53 10 12 chr12 115516796 115519818 -5737712 + MMETn-int LTR ERVK 1822 4837 -7 2 1466 2832 34 0 18 chr12 115519825 115520153 -5737377 + RLTRETN_Mm LTR ERVK 1 322 0 2 1466 536 238 39 35 chr12 115520153 115520350 -5737180 + Lx3C LINE L1 6777 6989 -11 2 1466 1371 211 95 6 chr12 115520393 115520741 -5736789 + L1_Mur2 LINE L1 21 399 -6313 2 1466 804 255 73 33 chr12 115520865 115521137 -5736393 + RMER13A LTR ERVK 96 378 -482 2 1466 297 332 92 42 chr12 115521199 115521397 -5736133 + RMER13A LTR ERVK 502 702 -158 2 1466 3127 79 2 26 chr12 115521397 115521812 -5735718 - L1_Mus1 LINE L1 0 6567 6163 2 1466 270 354 91 110 chr12 115521812 115521867 -5735663 + RMER13A LTR ERVK 703 750 -110 2 1466 732 235 34 34 chr12 115522634 115522810 -5734720 + RLTR41 LTR ERV1 1 176 -270 2 1466 1103 216 51 17 chr12 115522831 115523067 -5734463 + RLTR41 LTR ERV1 151 394 -52 2 1466 21 0 0 0 chr12 115524280 115524301 -5733229 + AT_rich Low_complexity Low_complexity 1 21 0 3 1466 760 284 81 17 chr12 115524613 115524910 -5732620 + ORR1D1 LTR MaLR 59 374 0 3 1466 3173 205 3 24 chr12 115525067 115525264 -5732266 - Lx3B LINE L1 0 6973 6780 3 1466 2470 148 33 10 chr12 115525264 115525654 -5731876 - RLTR9D LTR ERVK -4 399 1 3 1466 3173 205 3 24 chr12 115525654 115526094 -5731436 - Lx3B LINE L1 -194 6779 6349 3 1466 296 281 15 15 chr12 115527429 115527559 -5729971 - L1M1 LINE L1 -776 5524 5395 3 1466 284 263 83 64 chr12 115529608 115529773 -5727757 - RLTR13D3 LTR ERVK -42 1072 944 3 1466 3276 202 45 56 chr12 115530092 115530952 -5726578 + RLTR13A LTR ERVK 1 851 -4 3 1466 4237 220 10 46 chr12 115531011 115531953 -5725577 - RMER13B LTR ERVK 0 908 1 3 1466 736 311 77 27 chr12 115532117 115532414 -5725116 + ORR1D1 LTR MaLR 63 374 0 3 1466 3368 151 12 24 chr12 115533273 115533863 -5723667 - Lx LINE L1 -44 6610 6028 3 1466 8868 168 11 17 chr12 115533866 115535560 -5721970 + L1_Mm LINE L1 2715 4397 -1486 4 1466 395 332 110 58 chr12 115537214 115537505 -5720025 - MTE2a LTR MaLR -3 376 71 4 1466 838 162 7 0 chr12 115537812 115537966 -5719564 - Lx3_Mus LINE L1 0 7009 6855 4 1466 436 212 1 29 chr12 115539170 115539294 -5718236 - Lx2B LINE L1 -21 6633 6531 4 1466 2702 216 112 40 chr12 115540486 115541274 -5716256 - Lx2B LINE L1 -1086 5914 5097 4 1466 4290 55 16 6 chr12 115541274 115541783 -5715747 - L1Md_F3 LINE L1 0 6584 6071 4 1466 2702 229 95 57 chr12 115541783 115541899 -5715631 - Lx2B LINE L1 -790 5096 4981 4 1466 1144 266 62 57 chr12 115541906 115542370 -5715160 - Lx7 LINE L1 -444 7252 6795 4 1466 2514 177 16 39 chr12 115542391 115543349 -5714181 - RMER17A2 LTR ERVK -12 894 27 4 1466 296 256 11 22 chr12 115543373 115543465 -5714065 + Lx6 LINE L1 6483 6573 -887 4 1466 374 336 23 73 chr12 115543463 115543723 -5713807 + Lx9 LINE L1 6916 7162 -482 4 1466 517 149 2 153 chr12 115543778 115543915 -5713615 + ORR1B1 LTR MaLR 1 142 -252 4 1466 300 146 0 0 chr12 115543946 115543994 -5713536 - Lx7 LINE L1 -1153 6543 6496 4 1466 434 32 0 46 chr12 115543994 115544059 -5713471 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 5 1466 1227 57 6 0 chr12 115544059 115544218 -5713312 - B2_Mm1t SINE B2 -33 160 1 5 1466 367 306 18 0 chr12 115544218 115544329 -5713201 - Lx7 LINE L1 -1193 6503 6391 4 1466 2644 302 31 116 chr12 115544335 115544611 -5712919 + Lx2B LINE L1 5615 5799 -1209 5 1466 3541 119 0 35 chr12 115544611 115545131 -5712399 + Lx3_Mus LINE L1 6508 7009 0 5 1466 5094 219 22 37 chr12 115545131 115546376 -5711154 + Lx2B LINE L1 5781 7007 -1 5 1466 647 333 103 3 chr12 115546422 115546771 -5710759 + Lx8 LINE L1 6681 7064 -409 5 1466 2441 189 33 13 chr12 115547612 115548069 -5709461 - RLTR26 LTR ERVK -176 466 1 5 1466 10638 105 4 0 chr12 115548070 115549477 -5708053 - MERVK26-int LTR ERVK 0 6919 5508 5 1466 2932 182 56 30 chr12 115549646 115549702 -5707828 - Lx3B LINE L1 0 6973 6923 5 1466 3455 43 5 2 chr12 115549702 115550097 -5707433 - MTA_Mm LTR MaLR 0 396 1 5 1466 9031 66 11 0 chr12 115550097 115551183 -5706347 - MTA_Mm-int LTR MaLR 0 1098 1 5 1466 3459 40 2 20 chr12 115551183 115551586 -5705944 - MTA_Mm LTR MaLR 0 396 1 5 1466 2932 182 56 30 chr12 115551586 115552137 -5705393 - Lx3B LINE L1 -51 6922 6350 5 1466 2731 147 60 16 chr12 115553324 115553808 -5703722 - Lx3B LINE L1 -280 6374 5870 5 1466 1166 164 5 0 chr12 115553802 115553991 -5703539 - Lx3C LINE L1 -213 6763 6574 5 1466 343 193 113 88 chr12 115554017 115554176 -5703354 + RLTR22_Mus LTR ERVK 682 844 -964 5 1466 1269 248 84 73 chr12 115554160 115554415 -5703115 + RLTR22_Mur LTR ERVK 1068 1315 -533 6 1466 546 29 0 0 chr12 115554415 115554483 -5703047 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1466 1269 249 85 81 chr12 115554483 115554807 -5702723 + RLTR22_Mur LTR ERVK 1316 1608 -240 6 1466 4024 221 25 8 chr12 115554833 115555728 -5701802 + Lx3C LINE L1 6066 6975 -1 6 1466 1619 211 53 17 chr12 115555776 115556175 -5701355 + L1_Mur2 LINE L1 1 418 -6294 6 1466 662 261 75 61 chr12 115556283 115556561 -5700969 + RMER13A LTR ERVK 98 379 -481 6 1466 1032 203 17 22 chr12 115556564 115556796 -5700734 - LTRIS5 LTR ERV1 0 447 217 6 1466 378 134 60 0 chr12 115556832 115556899 -5700631 - LTRIS5 LTR ERV1 -376 71 1 6 1466 262 399 92 65 chr12 115556963 115557301 -5700229 + RMER13A LTR ERVK 502 848 -12 6 1466 845 268 87 8 chr12 115557315 115557556 -5699974 + L1_Mur2 LINE L1 270 529 -6183 6 1466 24 53 0 0 chr12 115557960 115557998 -5699532 + AT_rich Low_complexity Low_complexity 1 38 0 6 1466 24 0 0 0 chr12 115559382 115559406 -5698124 + AT_rich Low_complexity Low_complexity 1 24 0 6 1466 224 200 17 0 chr12 115559634 115559694 -5697836 + G-rich Low_complexity Low_complexity 5 65 0 6 1466 612 276 7 21 chr12 115559720 115560052 -5697478 - L1_Mur2 LINE L1 -5768 1214 886 6 1466 993 35 46 23 chr12 115561707 115561880 -5695650 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 7 1466 965 82 45 0 chr12 115561899 115562033 -5695497 - B1_Mus1 SINE Alu -8 140 1 7 1466 39478 8 0 1 chr12 115562834 115569827 -5687703 - L1Md_A LINE L1 0 6582 1 7 1466 6952 111 4 4 chr12 115571660 115573161 -5684369 + L1_Mus3 LINE L1 5135 6636 -2 7 1466 3402 189 11 148 chr12 115573188 115573677 -5683853 - L1_Mm LINE L1 -101 5782 5293 7 1466 4993 55 0 2 chr12 115573677 115574299 -5683231 - L1Md_F2 LINE L1 -14 6568 5948 7 1466 3402 189 11 148 chr12 115574299 115574874 -5682656 - L1_Mm LINE L1 -591 5292 4864 7 1466 2150 145 29 2 chr12 115574865 115575279 -5682251 - MusHAL1 LINE L1 -673 2039 1615 7 1466 283 146 0 4 chr12 115575283 115575338 -5682192 - Lx3C LINE L1 -1345 5631 5572 7 1466 5748 116 6 2 chr12 115575344 115576194 -5681336 + L1_Mus4 LINE L1 5770 6622 -14 7 1466 2514 200 13 16 chr12 115576201 115576751 -5680779 + Lx2 LINE L1 6412 6959 -38 7 1466 783 195 13 10 chr12 115576767 115577076 -5680454 + GA-rich Low_complexity Low_complexity 1 310 0 8 1466 23 0 0 0 chr12 115577558 115577581 -5679949 + AT_rich Low_complexity Low_complexity 1 23 0 8 1466 235 173 52 52 chr12 115577671 115577805 -5679725 + (ATATG)n Simple_repeat Simple_repeat 2 135 0 8 1466 396 261 0 0 chr12 115577818 115577937 -5679593 + (TA)n Simple_repeat Simple_repeat 2 120 0 8 1466 259 175 35 0 chr12 115578847 115578904 -5678626 + MTC LTR MaLR 1 59 -270 8 1466 876 314 24 56 chr12 115580037 115580375 -5677155 + MTC LTR MaLR 30 356 -65 8 1466 250 284 53 74 chr12 115580747 115580842 -5676688 + RLTR25A LTR ERVK 490 582 -521 8 1466 649 90 0 0 chr12 115580797 115580886 -5676644 + B1_Mus2 SINE Alu 59 147 0 8 1466 556 281 66 16 chr12 115581198 115581564 -5675966 + L1M2 LINE L1 5340 5723 -589 8 1466 36269 41 0 3 chr12 115582202 115587995 -5669535 + L1Md_A LINE L1 256 6129 -456 8 1466 1072 88 0 29 chr12 115588000 115588175 -5669355 - L1Md_F2 LINE L1 -10 6572 6403 8 1466 295 190 8 16 chr12 115589076 115589199 -5668331 + (CAGA)n Simple_repeat Simple_repeat 2 123 0 9 1466 309 323 103 59 chr12 115589199 115589403 -5668127 - MTE2a LTR MaLR -157 222 10 9 1466 184 315 0 64 chr12 115589852 115589930 -5667600 - L2a LINE L2 -88 3338 3266 9 1466 831 338 84 3 chr12 115591340 115591672 -5665858 + MTD LTR MaLR 30 388 -31 9 1466 4154 211 59 34 chr12 115591672 115592558 -5664972 - RMER13B LTR ERVK 0 908 1 9 1466 249 146 0 0 chr12 115592660 115592708 -5664822 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 9 1466 829 341 16 16 chr12 115592754 115593061 -5664469 + MTD LTR MaLR 10 316 -103 9 1466 19334 83 6 16 chr12 115596745 115599675 -5657855 - L1Md_F LINE L1 -1782 4101 1203 9 1466 2686 109 67 0 chr12 115599674 115600104 -5657426 - L1Md_F LINE L1 -5562 1054 596 9 1466 2849 84 0 0 chr12 115600104 115600498 -5657032 - MTA_Mm-int LTR MaLR -704 394 1 9 1466 2570 88 59 0 chr12 115600498 115600706 -5656824 - MTA_Mm LTR MaLR 0 396 167 9 1466 3902 51 22 2 chr12 115600706 115601199 -5656331 - L1Md_F2 LINE L1 -2 6580 6078 9 1466 2570 88 59 0 chr12 115601199 115601364 -5656166 - MTA_Mm LTR MaLR -230 166 2 9 1466 562 309 74 17 chr12 115601384 115601736 -5655794 + Lx7 LINE L1 7041 7412 -284 1 1466 351 175 0 0 chr12 115601790 115601853 -5655677 - L1_Mm LINE L1 -913 4970 4908 1 1466 1699 130 7 7 chr12 115601855 115602126 -5655404 + L1_Mus3 LINE L1 6363 6633 -5 1 1466 4391 132 11 6 chr12 115602266 115603382 -5654148 - Lx3A LINE L1 -579 6402 5281 1 1466 4545 115 9 1 chr12 115603382 115604115 -5653415 + Lx3A LINE L1 4538 5276 -610 1 1467 2597 158 21 0 chr12 115605526 115605951 -5651579 - Lx2 LINE L1 -1 6996 6563 1 1467 473 237 71 14 chr12 115606017 115606158 -5651372 - RMER12 LTR ERVK 0 1322 1174 1 1467 3166 173 19 15 chr12 115606232 115606819 -5650711 - RMER12 LTR ERVK -733 589 1 1 1467 1613 234 23 3 chr12 115607156 115607542 -5649988 + ORR1B1 LTR MaLR 1 394 0 1 1467 4531 259 48 13 chr12 115607542 115609000 -5648530 + ORR1B1-int LTR MaLR 1 1509 0 1 1467 1142 197 121 0 chr12 115609000 115609249 -5648281 + ORR1B1 LTR MaLR 1 279 -115 1 1467 608 118 25 8 chr12 115609250 115609370 -5648160 + L1_Mus4 LINE L1 6515 6636 0 1 1467 490 274 32 14 chr12 115609422 115609640 -5647890 + Lx9 LINE L1 6785 7006 -638 1 1467 233 244 60 9 chr12 115609647 115609763 -5647767 + Lx9 LINE L1 7523 7644 0 1 1467 349 312 48 28 chr12 115609808 115609953 -5647577 + ID_B1 SINE B4 13 160 -64 1 1467 1052 97 11 17 chr12 115610923 115611102 -5646428 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 1 1467 275 194 0 27 chr12 115611102 115611176 -5646354 + CT-rich Low_complexity Low_complexity 4 75 0 1 1467 406 287 101 6 chr12 115611232 115611369 -5646161 - MTD LTR MaLR -13 406 243 1 1467 3163 94 0 0 chr12 115611369 115611817 -5645713 - L1_Mus2 LINE L1 -80 5803 5356 1 1467 5275 97 55 1 chr12 115611817 115612574 -5644956 + L1_Mus2 LINE L1 5769 6566 0 1 1467 3600 238 45 9 chr12 115612575 115613731 -5643799 + Lx4B LINE L1 5789 6999 -1 1 1467 228 135 0 0 chr12 115614423 115614460 -5643070 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1467 2999 67 13 8 chr12 115614867 115615261 -5642269 + MTA_Mm LTR MaLR 1 396 0 1 1467 382 344 68 8 chr12 115616166 115616298 -5641232 - RSINE1 SINE B4 -22 143 4 1 1467 600 251 54 102 chr12 115616298 115616430 -5641100 - B4 SINE B4 -132 160 26 1 1467 279 0 0 0 chr12 115616430 115616461 -5641069 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1467 1160 42 0 0 chr12 115616461 115616599 -5640931 - B1_Mus2 SINE Alu -4 143 6 1 1467 600 251 54 102 chr12 115616599 115616639 -5640891 - B4 SINE B4 -267 25 1 1 1467 578 140 309 0 chr12 115616777 115616913 -5640617 + URR1B DNA MER1_type 1 178 -47 1 1467 245 221 12 61 chr12 115617599 115617681 -5639849 + CT-rich Low_complexity Low_complexity 1 78 0 1 1467 364 373 44 14 chr12 115618312 115618679 -5638851 - ERVL-int LTR ERVL -734 5023 4646 1 1467 1250 72 8 8 chr12 115618831 115619071 -5638459 + (TTTC)n Simple_repeat Simple_repeat 1 240 0 1 1467 1129 79 0 0 chr12 115619071 115619210 -5638320 - B1_Mus2 SINE Alu -6 141 3 1 1467 941 278 24 20 chr12 115619669 115619963 -5637567 + Lx6 LINE L1 7107 7401 -59 1 1467 815 342 51 22 chr12 115620022 115620473 -5637057 - RMER5 LTR ERV1 -38 496 33 1 1467 510 296 51 29 chr12 115622406 115622811 -5634719 + Lx9 LINE L1 5510 5961 -1683 1 1467 416 346 58 24 chr12 115622819 115623177 -5634353 + Lx9 LINE L1 6357 6853 -791 1 1467 1495 246 55 59 chr12 115623220 115623799 -5633731 - Lx7 LINE L1 -1 7695 7119 1 1467 793 256 9 13 chr12 115624570 115624796 -5632734 + URR1B DNA MER1_type 1 225 0 1 1467 736 192 73 0 chr12 115625168 115625319 -5632211 + RLTR40 LTR ERVK 18 179 -638 1 1467 4524 46 0 22 chr12 115625411 115625988 -5631542 - L1Md_F2 LINE L1 -5 6577 6014 1 1467 216 163 0 0 chr12 115626273 115626316 -5631214 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1467 207 0 0 0 chr12 115626339 115626362 -5631168 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1467 671 288 161 58 chr12 115626366 115626676 -5630854 - MT2A LTR ERVL -91 442 101 1 1467 548 254 82 48 chr12 115626723 115626954 -5630576 + Lx9 LINE L1 7213 7451 -193 1 1467 1538 239 3 17 chr12 115626989 115627338 -5630192 + ORR1B1 LTR MaLR 41 384 -10 1 1467 3232 126 6 4 chr12 115627363 115627864 -5629666 - L1_Mus3 LINE L1 -7 6631 6130 1 1467 397 144 91 53 chr12 115627884 115628016 -5629514 + Lx9 LINE L1 7507 7643 -1 1 1467 620 239 7 7 chr12 115628061 115628200 -5629330 - B1_Mur4 SINE Alu -7 143 5 1 1467 318 311 19 0 chr12 115628226 115628329 -5629201 + L1MC3 LINE L1 7670 7774 -11 1 1467 468 0 0 0 chr12 115628491 115628543 -5628987 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1467 329 302 84 25 chr12 115628547 115628666 -5628864 - B3A SINE B2 -56 142 17 1 1467 3527 113 5 29 chr12 115628928 115629490 -5628040 - L1_Mus3 LINE L1 -2 6636 6088 1 1467 24 0 0 0 chr12 115630821 115630845 -5626685 + AT_rich Low_complexity Low_complexity 1 24 0 1 1467 568 305 89 19 chr12 115632063 115632513 -5625017 + L1M3 LINE L1 3345 3854 -2289 1 1467 405 0 0 0 chr12 115632513 115632558 -5624972 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1467 544 314 144 17 chr12 115632558 115632945 -5624585 + L1M3 LINE L1 3855 4300 -1843 1 1467 794 304 100 16 chr12 115633137 115633508 -5624022 - Lx5 LINE L1 -765 6285 5884 1 1467 731 293 63 5 chr12 115633517 115633723 -5623807 - RMER13B LTR ERVK 0 908 691 1 1467 1768 194 46 0 chr12 115633721 115634050 -5623480 - RMER13B LTR ERVK -564 344 1 1 1467 1335 238 151 23 chr12 115634051 115634575 -5622955 - Lx5 LINE L1 -4 5873 5283 1 1467 3296 283 44 45 chr12 115634581 115635244 -5622286 - Lx5 LINE L1 0 7050 6385 1 1467 2603 91 0 0 chr12 115635244 115635597 -5621933 - L1_Mus1 LINE L1 0 6567 6215 1 1467 3296 283 44 45 chr12 115635597 115636147 -5621383 - Lx5 LINE L1 -666 6384 5839 1 1467 1072 200 0 4 chr12 115636148 115636384 -5621146 + Lx5 LINE L1 5593 5827 -1223 1 1467 1314 240 18 8 chr12 115636381 115636772 -5620758 - Lx5 LINE L1 -580 5297 4903 1 1467 4351 192 88 13 chr12 115636775 115637726 -5619804 - RLTR13D2 LTR ERVK 0 1023 1 1 1467 1629 207 65 0 chr12 115637790 115638205 -5619325 - Lx5 LINE L1 -1081 4796 4355 1 1467 266 87 22 0 chr12 115638214 115638260 -5619270 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 1 1467 346 236 8 16 chr12 115639423 115639552 -5617978 - Lx9 LINE L1 0 7644 7517 1 1467 21 36 0 0 chr12 115639600 115639628 -5617902 + AT_rich Low_complexity Low_complexity 1 28 0 1 1467 1642 211 4 33 chr12 115641539 115641989 -5615541 - L1_Mm LINE L1 -809 5074 4638 1 1467 457 346 49 11 chr12 115642855 115643039 -5614491 + ORR1E LTR MaLR 1 191 -168 1 1467 813 218 0 0 chr12 115643069 115643257 -5614273 - L1_Mur2 LINE L1 -623 5254 5067 1 1467 2965 144 3 5 chr12 115643258 115643961 -5613569 + Lx LINE L1 5277 5976 -678 1 1467 303 28 0 0 chr12 115645000 115645036 -5612494 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1467 6097 130 23 2 chr12 115645726 115647025 -5610505 - L1_Mus3 LINE L1 -6 6632 5306 1 1467 216 0 0 0 chr12 115647464 115647488 -5610042 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1467 1548 261 61 0 chr12 115647501 115647911 -5609619 - RMER6B LTR ERVK -18 443 9 1 1467 386 176 12 0 chr12 115650106 115650191 -5607339 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 1467 492 18 0 0 chr12 115650198 115650255 -5607275 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1467 650 278 30 55 chr12 115650256 115650582 -5606948 - MT2A LTR ERVL -117 484 82 1 1467 4391 8 0 0 chr12 115650588 115651073 -5606457 + L1Md_T LINE L1 6098 6582 0 1 1467 283 200 0 44 chr12 115651073 115651141 -5606389 - MT2A LTR ERVL -445 88 24 1 1467 526 248 98 45 chr12 115651145 115651390 -5606140 + Lx9 LINE L1 7202 7459 -185 1 1467 1612 231 6 39 chr12 115651427 115651791 -5605739 + ORR1B1 LTR MaLR 43 394 0 1 1467 477 50 0 0 chr12 115651803 115651863 -5605667 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1467 370 227 25 55 chr12 115651882 115652045 -5605485 + Lx9 LINE L1 7483 7640 -4 1 1467 552 260 7 14 chr12 115652093 115652241 -5605289 - B1_Mur4 SINE Alu -3 147 1 1 1467 654 13 0 0 chr12 115652522 115652597 -5604933 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1467 2446 234 34 5 chr12 115652716 115653342 -5604188 + Lx LINE L1 6011 6654 0 1 1467 2660 172 11 7 chr12 115653397 115653967 -5603563 - L1_Mus4 LINE L1 -8 6558 5981 1 1467 474 207 16 32 chr12 115653974 115654099 -5603431 + Lx LINE L1 5871 5993 -661 1 1467 183 361 83 0 chr12 115655041 115655113 -5602417 + L2b LINE L2 3140 3217 -158 1 1467 1132 38 0 71 chr12 115655437 115655606 -5601924 - L1Md_F3 LINE L1 -9 6575 6419 1 1467 20235 173 22 9 chr12 115655998 115659530 -5598000 - L1_Mus3 LINE L1 -5 6633 3055 1 1467 321 26 0 0 chr12 115659530 115659568 -5597962 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1467 20235 192 22 13 chr12 115659568 115662000 -5595530 - L1_Mus3 LINE L1 -2829 3054 609 1 1467 199 54 0 51 chr12 115662152 115662191 -5595339 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1467 365 26 8 123 chr12 115662192 115662322 -5595208 + (CATATA)n Simple_repeat Simple_repeat 6 120 0 1 1467 300 53 0 0 chr12 115662323 115662361 -5595169 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1467 789 21 0 0 chr12 115662361 115662456 -5595074 + (CACAT)n Simple_repeat Simple_repeat 1 95 0 1 1467 366 272 14 62 chr12 115662991 115663136 -5594394 + RLTR43A LTR ERVK 227 364 0 1 1467 203 160 0 39 chr12 115663136 115663188 -5594342 + GA-rich Low_complexity Low_complexity 2 51 0 1 1467 22 0 0 0 chr12 115663969 115663991 -5593539 + AT_rich Low_complexity Low_complexity 1 22 0 1 1467 822 306 57 49 chr12 115664063 115664413 -5593117 + ORR1E LTR MaLR 1 353 -6 1 1467 207 0 0 0 chr12 115665153 115665176 -5592354 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1467 243 0 0 0 chr12 115665235 115665262 -5592268 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1467 453 36 0 0 chr12 115665263 115665318 -5592212 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1467 1570 231 66 14 chr12 115665924 115666346 -5591184 - RMER6B LTR ERVK -17 444 1 1 1467 24 53 0 0 chr12 115666574 115666612 -5590918 + AT_rich Low_complexity Low_complexity 1 38 0 1 1467 2836 171 6 28 chr12 115666781 115667327 -5590203 + Lx LINE L1 6017 6550 -104 1 1467 348 26 50 50 chr12 115668308 115668388 -5589142 + (TTTTG)n Simple_repeat Simple_repeat 2 81 0 1 1467 468 291 47 16 chr12 115668924 115669053 -5588477 + ETnERV2-int LTR ERVK 7070 7202 -204 1 1467 669 176 66 12 chr12 115670054 115670221 -5587309 - Lx2 LINE L1 -2 6995 6820 1 1467 260 211 0 14 chr12 115670649 115670721 -5586809 + (CATATA)n Simple_repeat Simple_repeat 5 75 0 1 1467 665 333 32 86 chr12 115670723 115670874 -5586656 - MT2A LTR ERVL -92 441 291 1 1467 1180 48 7 0 chr12 115670874 115671020 -5586510 + B1_Mus2 SINE Alu 1 147 0 1 1467 665 333 32 86 chr12 115671020 115671308 -5586222 - MT2A LTR ERVL -243 290 26 1 1467 588 65 0 0 chr12 115671446 115671523 -5586007 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1467 2593 199 62 8 chr12 115671642 115672251 -5585279 + Lx LINE L1 6011 6652 -2 2 1467 28 29 0 0 chr12 115673854 115673889 -5583641 + AT_rich Low_complexity Low_complexity 1 35 0 2 1467 22 35 0 0 chr12 115675011 115675040 -5582490 + AT_rich Low_complexity Low_complexity 1 29 0 2 1467 32553 26 2 1 chr12 115675231 115679954 -5577576 - L1Md_T LINE L1 -12 6570 1839 2 1467 559 322 84 41 chr12 115679984 115680141 -5577389 + L1M2 LINE L1 3511 3683 -2460 2 1467 2850 211 15 5 chr12 115680141 115680733 -5576797 + Lx2 LINE L1 6396 6993 -4 2 1467 559 322 84 41 chr12 115680733 115681333 -5576197 + L1M2 LINE L1 3684 4301 -1842 2 1467 249 203 0 0 chr12 115681512 115681571 -5575959 + CT-rich Low_complexity Low_complexity 1 59 0 2 1467 397 207 22 22 chr12 115681571 115681749 -5575781 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 1467 1046 320 63 37 chr12 115681775 115682663 -5574867 - Lx5 LINE L1 -27 7023 6211 2 1467 803 210 148 51 chr12 115682658 115682989 -5574541 - L1_Mur3 LINE L1 -221 5659 5297 2 1467 477 0 0 0 chr12 115682989 115683042 -5574488 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 2 1467 1278 80 0 0 chr12 115683042 115683217 -5574313 + (TCTCCC)n Simple_repeat Simple_repeat 4 179 0 2 1467 567 43 0 0 chr12 115683217 115683286 -5574244 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 2 1467 1512 292 31 31 chr12 115683286 115683766 -5573764 - Lx5 LINE L1 -14 7036 6557 2 1467 378 0 0 0 chr12 115684702 115684744 -5572786 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1467 297 0 0 0 chr12 115684854 115684887 -5572643 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1467 540 0 0 0 chr12 115684887 115684946 -5572584 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1467 228 173 19 19 chr12 115685075 115685128 -5572402 + GA-rich Low_complexity Low_complexity 2 54 0 2 1467 726 117 200 0 chr12 115685147 115685267 -5572263 + B1_Mus1 SINE Alu 2 145 -3 2 1467 281 66 32 32 chr12 115685268 115685331 -5572199 + (CAAA)n Simple_repeat Simple_repeat 3 65 0 2 1467 672 295 100 48 chr12 115686156 115686487 -5571043 + ORR1D2 LTR MaLR 6 353 -17 2 1467 1625 204 50 0 chr12 115687889 115688227 -5569303 - RMER6B LTR ERVK -68 393 39 2 1467 22 80 0 0 chr12 115688479 115688529 -5569001 + AT_rich Low_complexity Low_complexity 1 50 0 2 1467 34 65 0 0 chr12 115688610 115688672 -5568858 + AT_rich Low_complexity Low_complexity 1 62 0 2 1467 775 296 17 71 chr12 115691314 115691609 -5565921 - MT2A LTR ERVL -231 302 24 2 1467 341 316 27 32 chr12 115691639 115691858 -5565672 + Lx9 LINE L1 7242 7459 -185 2 1467 1643 241 0 14 chr12 115691893 115692251 -5565279 + ORR1B1 LTR MaLR 42 394 0 2 1467 367 189 14 70 chr12 115692254 115692396 -5565134 + Lx9 LINE L1 7507 7640 -4 2 1467 413 276 132 16 chr12 115692440 115692569 -5564961 - B1_Mus1 SINE Alu -3 145 2 2 1467 246 227 0 0 chr12 115692628 115692694 -5564836 + L1MC4a LINE L1 7807 7872 -10 2 1467 306 0 0 0 chr12 115692881 115692915 -5564615 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1467 297 315 60 38 chr12 115692957 115693142 -5564388 - B3A SINE B2 -8 190 2 2 1467 432 348 32 8 chr12 115695036 115695285 -5562245 + L1M2 LINE L1 3342 3596 -2547 2 1467 4403 106 27 3 chr12 115696083 115696745 -5560785 + L1_Mus4 LINE L1 5954 6631 -5 2 1467 1356 209 25 30 chr12 115697944 115698305 -5559225 - RLTR15 LTR ERVK 0 359 1 2 1467 21 36 0 0 chr12 115698327 115698355 -5559175 + AT_rich Low_complexity Low_complexity 1 28 0 2 1467 282 297 18 0 chr12 115698367 115698478 -5559052 - MYSERV6-int LTR ERVK -54 8905 8793 2 1467 1396 333 67 19 chr12 115698478 115699671 -5557859 + RMER1A Other Other 27 672 -358 2 1467 921 233 66 51 chr12 115699675 115700010 -5557520 + RLTR15 LTR ERVK 1 340 -19 2 1467 1104 220 85 10 chr12 115700018 115700325 -5557205 + RMER1B Other Other 734 1063 -3 2 1467 298 42 42 0 chr12 115701827 115701875 -5555655 + (TTG)n Simple_repeat Simple_repeat 2 51 0 2 1467 1036 94 0 7 chr12 115701875 115702014 -5555516 - B1_Mus2 SINE Alu -9 138 1 2 1467 1609 217 32 8 chr12 115702597 115702664 -5554866 - L1_Mur2 LINE L1 -199 5684 5608 2 1467 4385 62 2 29 chr12 115702664 115703244 -5554286 + LTRIS2 LTR ERV1 1 564 0 2 1467 1609 217 32 8 chr12 115703244 115703571 -5553959 - L1_Mur2 LINE L1 -266 5611 5287 2 1467 1029 89 0 40 chr12 115703571 115703723 -5553807 - B1_Mus1 SINE Alu -2 146 1 2 1467 1373 246 30 61 chr12 115703723 115703789 -5553741 - L1_Mur2 LINE L1 -586 5297 5238 2 1467 215 130 0 18 chr12 115704672 115704727 -5552803 + (CAAAAA)n Simple_repeat Simple_repeat 4 57 0 2 1467 474 276 32 22 chr12 115704727 115704912 -5552618 + MYSERV6-int LTR ERVK 8356 8542 -417 2 1467 315 183 33 0 chr12 115704912 115704972 -5552558 + RLTR40 LTR ERVK 55 116 -701 2 1467 2564 161 17 26 chr12 115705298 115705897 -5551633 - RLTR13D2 LTR ERVK -1 1022 1 2 1467 385 161 23 0 chr12 115708197 115708284 -5549246 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 1467 562 313 70 0 chr12 115708631 115708874 -5548656 - Lx8 LINE L1 -802 6671 6412 2 1467 413 294 35 82 chr12 115709048 115709321 -5548209 + Lx7 LINE L1 5565 5829 -1867 2 1467 3430 125 70 0 chr12 115710255 115710799 -5546731 + L1_Mus3 LINE L1 6056 6637 -1 2 1467 21 0 0 0 chr12 115710799 115710820 -5546710 + AT_rich Low_complexity Low_complexity 1 21 0 2 1467 6513 185 39 14 chr12 115713044 115715229 -5542301 - Lx2B LINE L1 -4 6996 4755 2 1467 1195 192 62 10 chr12 115715216 115715521 -5542009 + Lx LINE L1 6334 6654 0 2 1467 323 200 0 0 chr12 115715525 115715590 -5541940 - MYSERV6-int LTR ERVK -6493 2466 2402 2 1467 625 365 42 34 chr12 115716066 115716539 -5540991 - Lx5 LINE L1 -18 7032 6556 2 1467 23 0 0 0 chr12 115716882 115716905 -5540625 + AT_rich Low_complexity Low_complexity 1 23 0 2 1467 232 182 36 0 chr12 115716921 115716976 -5540554 - Lx7 LINE L1 0 7696 7640 2 1467 413 152 13 0 chr12 115717993 115718072 -5539458 + Lx2 LINE L1 1826 1905 -3972 2 1467 2016 236 39 111 chr12 115718060 115718534 -5538996 + Lx2 LINE L1 2390 2787 -3090 2 1467 185 0 40 0 chr12 115718534 115718559 -5538971 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1467 2016 236 39 111 chr12 115718559 115719098 -5538432 + Lx2 LINE L1 2788 3330 -2547 2 1467 223 151 0 70 chr12 115719686 115719743 -5537787 + (TATAA)n Simple_repeat Simple_repeat 3 55 0 2 1467 1445 188 18 11 chr12 115720221 115720501 -5537029 - RMER2 LTR ERV1 -285 282 1 2 1467 437 306 63 9 chr12 115720562 115720783 -5536747 - Lx8 LINE L1 -541 6932 6700 2 1467 6024 209 20 9 chr12 115721054 115722123 -5535407 + Lx2 LINE L1 4828 5903 -1094 2 1467 399 21 0 0 chr12 115722123 115722171 -5535359 + (CAA)n Simple_repeat Simple_repeat 2 49 0 2 1467 6478 201 35 14 chr12 115722171 115723236 -5534294 + Lx2 LINE L1 5904 6994 -3 2 1467 1202 244 27 35 chr12 115723260 115723634 -5533896 + MYSERV-int LTR ERVK 5535 5905 -645 2 1467 205 221 14 42 chr12 115723656 115723727 -5533803 + A-rich Low_complexity Low_complexity 2 70 0 2 1467 369 247 64 68 chr12 115723747 115723918 -5533612 + MYSERV-int LTR ERVK 8379 8540 -419 2 1467 24 32 0 0 chr12 115724598 115724629 -5532901 + AT_rich Low_complexity Low_complexity 1 31 0 2 1467 234 284 0 0 chr12 115726254 115726321 -5531209 + L1M3 LINE L1 5677 5743 -446 2 1467 328 366 67 9 chr12 115726647 115726870 -5530660 - Lx8 LINE L1 -826 6647 6412 2 1467 908 240 6 0 chr12 115726972 115727155 -5530375 + Lx LINE L1 6110 6293 -361 2 1467 6103 164 25 10 chr12 115727144 115728915 -5528615 + L1_Mus4 LINE L1 4836 6626 -10 2 1467 279 0 0 0 chr12 115728921 115728952 -5528578 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 1467 4823 278 90 20 chr12 115729750 115730600 -5526930 - Lx5 LINE L1 -711 6749 5573 2 1467 243 0 0 0 chr12 115730600 115730627 -5526903 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1467 4823 236 54 23 chr12 115730627 115731835 -5525695 - Lx5 LINE L1 -308 5572 4361 2 1467 1582 266 113 50 chr12 115732206 115732771 -5524759 + RLTR18 LTR ERVK 16 616 0 2 1467 1845 235 5 35 chr12 115732869 115733275 -5524255 - RLTR21 LTR ERVK -1168 404 11 2 1467 388 50 58 39 chr12 115733555 115733658 -5523872 + (CAAA)n Simple_repeat Simple_repeat 2 106 0 2 1467 276 215 48 60 chr12 115733867 115733951 -5523579 - RLTR11A LTR ERVK 0 528 446 2 1467 4830 109 0 0 chr12 115734599 115735288 -5522242 - L1_Mus2 LINE L1 -1 6565 5877 2 1467 5772 106 3 6 chr12 115735289 115736141 -5521389 + L1_Mus2 LINE L1 5024 5873 -10 2 183 505 302 8 0 chr12 115736551 115736680 -5520850 - B3 SINE B2 -86 130 1 2 1468 36 23 0 0 chr12 115736743 115736786 -5520744 + AT_rich Low_complexity Low_complexity 1 43 0 2 1468 784 129 24 0 chr12 115736942 115737066 -5520464 - L1VL4 LINE L1 -5923 379 253 2 1468 800 310 101 14 chr12 115737871 115738237 -5519293 + BGLII_B LTR ERVK 24 421 -20 2 1468 590 221 63 11 chr12 115738255 115738429 -5519101 - Lx7 LINE L1 -363 7333 7151 2 1468 411 298 0 14 chr12 115738454 115738597 -5518933 - Lx6 LINE L1 -174 7286 7146 2 1468 840 312 17 10 chr12 115738600 115738891 -5518639 + Lx6 LINE L1 6844 7136 -324 2 1468 531 0 0 0 chr12 115738894 115738953 -5518577 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1468 421 185 25 0 chr12 115738953 115739034 -5518496 - Lx7 LINE L1 -1971 5725 5643 2 1468 959 229 4 26 chr12 115739070 115739303 -5518227 + RMER19B LTR ERVK 675 902 0 2 1468 417 361 6 6 chr12 115739512 115739668 -5517862 + Lx8 LINE L1 6214 6369 -1104 2 1468 29656 58 3 0 chr12 115739880 115744367 -5513163 - L1Md_F2 LINE L1 -2 6580 2083 2 1468 2259 201 9 16 chr12 115744356 115744882 -5512648 - L1Md_F2 LINE L1 -5763 961 418 2 1468 267 288 0 0 chr12 115744862 115744921 -5512609 - Lx8 LINE L1 -1153 6320 6262 2 1468 446 318 53 43 chr12 115745007 115745214 -5512316 - B3 SINE B2 0 216 8 2 1468 1234 100 4 95 chr12 115745874 115746117 -5511413 - L1_Mur1 LINE L1 -2437 3449 3229 2 1468 743 226 18 52 chr12 115746123 115746352 -5511178 + MYSERV-int LTR ERVK 5553 5773 -777 2 1468 4840 23 2 0 chr12 115746355 115746922 -5510608 + L1Md_T LINE L1 5019 5586 -297 2 1468 8054 45 7 0 chr12 115746922 115747910 -5509620 + L1Md_T LINE L1 5587 6581 -1 2 1468 612 287 6 0 chr12 115747911 115748075 -5509455 + MYSERV-int LTR ERVK 5771 5935 -615 2 1468 205 100 75 0 chr12 115748076 115748116 -5509414 + A-rich Low_complexity Low_complexity 3 45 0 2 1468 628 247 26 37 chr12 115748118 115748307 -5509223 + MYSERV6-int LTR ERVK 8356 8542 -417 2 1468 300 172 35 0 chr12 115748307 115748365 -5509165 + RLTR40 LTR ERVK 55 114 -703 2 1468 6922 103 8 36 chr12 115748850 115750181 -5507349 - L1_Mus3 LINE L1 0 6638 5345 2 1468 23 33 0 0 chr12 115750808 115750838 -5506692 + AT_rich Low_complexity Low_complexity 1 30 0 2 1468 337 145 13 13 chr12 115752426 115752503 -5505027 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 1468 633 324 53 0 chr12 115752849 115753096 -5504434 - Lx8 LINE L1 -802 6671 6412 3 1468 589 300 37 61 chr12 115753090 115753568 -5503962 + L1_Rod LINE L1 5361 5798 -49 3 1468 3462 119 70 0 chr12 115754502 115755046 -5502484 + L1_Mus3 LINE L1 6056 6637 -1 3 1468 414 0 0 0 chr12 115756627 115756673 -5500857 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1468 6480 186 32 46 chr12 115757336 115758317 -5499213 - Lx2B LINE L1 -10 6990 6040 3 1468 2775 33 119 8 chr12 115758317 115758687 -5498843 - IAPLTR2a LTR ERVK 0 411 1 3 1468 6480 177 20 16 chr12 115758687 115759552 -5497978 - Lx2B LINE L1 -961 6039 5161 3 1468 580 132 0 0 chr12 115759552 115759643 -5497887 - Lx2B LINE L1 -1021 4862 4772 3 1468 1441 213 9 6 chr12 115759647 115759963 -5497567 + Lx LINE L1 6334 6650 -4 3 1468 400 109 15 15 chr12 115759966 115760031 -5497499 - MYSERV6-int LTR ERVK -6493 2466 2402 3 1468 696 366 44 36 chr12 115760505 115760978 -5496552 - Lx5 LINE L1 -18 7032 6556 3 1468 23 0 0 0 chr12 115761323 115761346 -5496184 + AT_rich Low_complexity Low_complexity 1 23 0 3 1468 248 182 36 0 chr12 115761362 115761417 -5496113 - Lx7 LINE L1 0 7696 7640 3 1468 491 285 32 0 chr12 115762441 115762564 -5494966 - B3A SINE B2 -67 131 5 3 1468 2659 86 73 0 chr12 115762705 115763088 -5494442 + IAPLTR2a LTR ERVK 1 411 0 3 1468 1008 128 25 82 chr12 115763089 115763285 -5494245 + IAPEz-int LTR ERVK 9 193 -6288 3 1468 226 345 0 0 chr12 115763285 115763340 -5494190 + RLTR27 LTR ERVK 221 275 -34 3 1468 3446 68 1 19 chr12 115763340 115763920 -5493610 + IAPEz-int LTR ERVK 168 662 -5819 3 1468 2719 61 0 3 chr12 115763920 115764263 -5493267 + IAPEz-int LTR ERVK 1359 1700 -4781 3 1468 6856 35 4 11 chr12 115764256 115765091 -5492439 + IAPEz-int LTR ERVK 5651 6479 -2 3 1468 2783 73 70 0 chr12 115765093 115765477 -5492053 + IAPLTR2a LTR ERVK 1 411 0 3 1468 10980 9 0 1 chr12 115766120 115768056 -5489474 - L1Md_A LINE L1 0 6582 4648 3 1468 541 303 38 30 chr12 115768562 115768977 -5488553 + Lx2 LINE L1 941 1358 -4519 3 1468 1268 247 23 40 chr12 115768986 115769416 -5488114 + Lx2 LINE L1 1486 1908 -3972 3 1468 2099 236 42 141 chr12 115769403 115770447 -5487083 + Lx2 LINE L1 2390 3330 -2547 3 1468 214 154 18 55 chr12 115771036 115771091 -5486439 + (TATAA)n Simple_repeat Simple_repeat 3 55 0 3 1468 1545 181 18 0 chr12 115771569 115771846 -5485684 - RMER2 LTR ERV1 -285 282 1 3 1468 795 357 66 4 chr12 115771894 115772395 -5485135 - Lx8 LINE L1 -528 6945 6414 3 1468 7062 206 14 8 chr12 115772398 115773465 -5484065 + Lx2 LINE L1 4828 5903 -1094 3 1468 246 62 0 0 chr12 115773465 115773497 -5484033 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1468 7062 193 16 15 chr12 115773497 115774589 -5482941 + Lx2 LINE L1 5904 6994 -3 3 1468 1287 253 22 32 chr12 115774599 115775003 -5482527 + MYSERV-int LTR ERVK 5521 5920 -630 3 1468 375 276 96 35 chr12 115775102 115775273 -5482257 + MYSERV-int LTR ERVK 8379 8540 -419 3 1468 251 265 0 0 chr12 115777618 115777686 -5479844 + L1M2 LINE L1 5676 5743 -557 3 1468 240 371 67 9 chr12 115778012 115778235 -5479295 - Lx8 LINE L1 -826 6647 6412 3 1468 918 219 6 0 chr12 115778337 115778520 -5479010 + Lx LINE L1 6110 6293 -361 3 1468 5778 161 26 10 chr12 115778509 115780278 -5477252 + L1_Mus4 LINE L1 4836 6626 -10 3 1468 34 0 0 0 chr12 115780283 115780317 -5477213 + AT_rich Low_complexity Low_complexity 1 34 0 3 1468 242 339 18 0 chr12 115780963 115781075 -5476455 - Lx5 LINE L1 -344 6706 6593 3 1468 4646 256 59 23 chr12 115781107 115783183 -5474347 - Lx5 LINE L1 -711 6749 4360 3 1468 1334 267 100 56 chr12 115783539 115784119 -5473411 + RLTR18 LTR ERVK 5 616 0 3 1468 1842 227 5 35 chr12 115784217 115784623 -5472907 - RLTR21 LTR ERVK -1168 404 11 3 1468 279 215 48 60 chr12 115785122 115785206 -5472324 - RLTR11A LTR ERVK 0 528 446 3 1468 3111 94 0 0 chr12 115785871 115786297 -5471233 - L1_Mus2 LINE L1 -1 6565 6140 3 1468 2899 204 19 4 chr12 115786683 115787219 -5470311 - RLTR26 LTR ERVK -98 544 1 3 1468 14003 138 26 23 chr12 115787236 115788559 -5468971 - MERVK26-int LTR ERVK -7 6912 5529 3 1468 230 313 48 57 chr12 115788559 115788664 -5468866 - LTR48 LTR ERV1 -612 175 72 3 1468 14003 138 26 23 chr12 115788664 115789744 -5467786 - MERVK26-int LTR ERVK -7 5528 4398 3 1468 13850 22 0 0 chr12 115789745 115791436 -5466094 + L1Md_A LINE L1 3896 5586 -297 3 1468 8270 38 2 1 chr12 115791436 115792431 -5465099 + L1Md_A LINE L1 5587 6582 0 3 1468 330 202 0 101 chr12 115792450 115792549 -5464981 + RLTR22_Mus LTR ERVK 722 810 -998 3 1468 381 323 21 87 chr12 115792807 115793048 -5464482 + RLTR22_Mur LTR ERVK 1589 1813 -35 3 1468 514 218 9 0 chr12 115793258 115793368 -5464162 + RLTR40 LTR ERVK 3 113 -704 3 1468 382 277 62 61 chr12 115794721 115794969 -5462561 + RLTR20D LTR ERVK 1 253 -252 3 1468 201 29 88 0 chr12 115795264 115795298 -5462232 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1468 2498 199 16 9 chr12 115796433 115797133 -5460397 - Lx5 LINE L1 -839 6211 5499 3 1468 273 314 74 8 chr12 115797220 115797342 -5460188 - Lx8 LINE L1 -152 7321 7192 3 1468 25 0 0 0 chr12 115797389 115797414 -5460116 + AT_rich Low_complexity Low_complexity 1 25 0 3 1468 922 303 115 19 chr12 115797586 115797859 -5459671 - Lx8 LINE L1 -324 7149 6857 3 1468 339 44 0 0 chr12 115797859 115797904 -5459626 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1468 922 303 115 19 chr12 115797904 115798255 -5459275 - Lx8 LINE L1 -617 6856 6465 3 1468 248 414 22 22 chr12 115798277 115798413 -5459117 + RMER13B LTR ERVK 722 857 -51 3 1468 3721 169 64 77 chr12 115798414 115799425 -5458105 + MurERV4_19-int LTR ERVK 4569 5566 -214 3 1468 1299 284 39 56 chr12 115799575 115799753 -5457777 + RMER19C LTR ERVK 136 312 -299 3 1468 2469 94 147 19 chr12 115799753 115800174 -5457356 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1468 1299 284 39 56 chr12 115800174 115800479 -5457051 + RMER19C LTR ERVK 313 611 0 3 1468 407 290 14 58 chr12 115801275 115801414 -5456116 - RMER13B LTR ERVK 0 908 776 3 1468 4590 181 9 29 chr12 115801417 115802291 -5455239 - RMER13B LTR ERVK -51 857 1 3 1468 23 0 0 0 chr12 115804107 115804130 -5453400 + AT_rich Low_complexity Low_complexity 1 23 0 3 1468 1658 297 10 22 chr12 115804193 115804780 -5452750 - Lx5 LINE L1 -47 7003 6455 3 1468 257 0 0 29 chr12 115804803 115804837 -5452693 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 1468 591 257 111 11 chr12 115804923 115805112 -5452418 - Lx5 LINE L1 -597 6453 6246 3 1468 476 301 43 11 chr12 115805198 115805383 -5452147 - RLTR15 LTR ERVK -135 224 34 3 1468 6194 51 0 1 chr12 115805395 115806198 -5451332 - L1Md_F3 LINE L1 -19 5864 5063 3 1468 5573 30 30 4 chr12 115806198 115806890 -5450640 + L1Md_F3 LINE L1 5873 6582 -2 3 1468 378 0 0 0 chr12 115806937 115806979 -5450551 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1468 467 151 0 11 chr12 115807653 115807747 -5449783 + (TATG)n Simple_repeat Simple_repeat 2 94 0 3 1468 191 125 0 24 chr12 115808652 115808693 -5448837 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 3 1468 553 203 19 51 chr12 115808697 115808857 -5448673 - B1_Mus2 SINE Alu -3 147 1 3 1468 232 322 109 68 chr12 115810432 115810652 -5446878 - RMER13A LTR ERVK -303 557 329 3 1468 965 250 96 17 chr12 115810914 115811268 -5446262 + ORR1C2 LTR MaLR 1 382 -2 3 1468 499 252 49 28 chr12 115811312 115811455 -5446075 - MTE2b LTR MaLR -13 366 221 3 1468 234 231 19 0 chr12 115811618 115811670 -5445860 - MTE2b LTR MaLR -297 82 30 3 1468 593 130 18 9 chr12 115812022 115812131 -5445399 - Lx2B LINE L1 -3 6997 6888 3 1468 2111 166 36 69 chr12 115812136 115812629 -5444901 + L1_Mm LINE L1 4428 4904 -979 3 1468 573 246 150 17 chr12 115812684 115812924 -5444606 + RLTR10A LTR ERVK 140 411 0 3 1468 475 191 0 0 chr12 115812924 115813018 -5444512 + Lx3_Mus LINE L1 4897 4990 -887 3 1468 471 35 0 0 chr12 115813018 115813075 -5444455 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1468 21 0 0 0 chr12 115813075 115813096 -5444434 + AT_rich Low_complexity Low_complexity 1 21 0 3 1468 1170 68 0 0 chr12 115813102 115813249 -5444281 + B1_Mm SINE Alu 1 147 0 3 1468 603 88 0 93 chr12 115813249 115813393 -5444137 + A-rich Low_complexity Low_complexity 10 139 0 3 1468 1497 205 24 5 chr12 115813394 115813767 -5443763 + Lx3_Mus LINE L1 4981 5360 -517 3 1468 594 148 0 0 chr12 115814516 115814617 -5442913 + (TTC)n Simple_repeat Simple_repeat 2 102 0 3 1468 933 168 0 0 chr12 115814618 115814797 -5442733 + CT-rich Low_complexity Low_complexity 2 180 0 3 1468 7473 109 7 8 chr12 115814831 115816746 -5440784 - L1_Mus2 LINE L1 0 6566 4650 3 1468 970 158 16 5 chr12 115816755 115816939 -5440591 + Lx3_Mus LINE L1 5944 6129 -880 3 1468 384 145 0 0 chr12 115816977 115817039 -5440491 + Lx3_Mus LINE L1 5479 5540 -346 3 1468 8551 114 10 10 chr12 115817053 115818409 -5439121 + Lx3_Mus LINE L1 5654 7009 0 3 1468 3054 232 134 19 chr12 115818629 115819664 -5437866 - L1_Mur3 LINE L1 -347 5533 4380 3 1468 2218 221 76 37 chr12 115819691 115820259 -5437271 + RLTR18 LTR ERVK 27 616 0 3 1468 261 0 0 0 chr12 115820335 115820364 -5437166 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1468 804 30 0 0 chr12 115820364 115820462 -5437068 + (GA)n Simple_repeat Simple_repeat 2 100 0 3 1468 32 43 0 0 chr12 115820653 115820699 -5436831 + AT_rich Low_complexity Low_complexity 1 46 0 3 1468 484 232 18 0 chr12 115821217 115821329 -5436201 + RLTR40 LTR ERVK 1 114 -703 3 1468 324 176 0 0 chr12 115822576 115822644 -5434886 + (ATG)n Simple_repeat Simple_repeat 2 69 0 3 1468 3612 37 0 0 chr12 115822743 115823197 -5434333 + L1Md_F2 LINE L1 5133 5586 -297 3 1468 8087 46 1 3 chr12 115823197 115824192 -5433338 + L1Md_F2 LINE L1 5587 6579 -3 3 1468 24 32 0 0 chr12 115824193 115824224 -5433306 + AT_rich Low_complexity Low_complexity 1 31 0 3 1468 28 29 0 0 chr12 115824329 115824364 -5433166 + AT_rich Low_complexity Low_complexity 1 35 0 3 1468 273 361 27 16 chr12 115824535 115824718 -5432812 + Lx8 LINE L1 6214 6398 -1075 3 1468 422 146 0 0 chr12 115824745 115824827 -5432703 - Lx3_Mus LINE L1 0 7009 6928 3 1468 2844 132 51 8 chr12 115824827 115825337 -5432193 - Lx3_Mus LINE L1 -791 6218 5687 3 1468 260 227 182 0 chr12 115825388 115825476 -5432054 + Lx7 LINE L1 6993 7096 -600 3 1468 793 126 7 0 chr12 115825712 115825847 -5431683 + Lx2A1 LINE L1 6867 7002 -6 3 1468 575 38 0 36 chr12 115825871 115825954 -5431576 + (TA)n Simple_repeat Simple_repeat 2 81 0 3 1468 1076 232 15 7 chr12 115826731 115827000 -5430530 + Lx4B LINE L1 6705 6975 -83 3 1468 22 56 0 0 chr12 115827574 115827610 -5429920 + AT_rich Low_complexity Low_complexity 1 36 0 3 1468 180 0 0 0 chr12 115827692 115827712 -5429818 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1468 401 0 20 0 chr12 115828315 115828364 -5429166 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1468 1149 70 23 0 chr12 115828366 115828538 -5428992 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 3 1468 33550 52 4 6 chr12 115828591 115835390 -5422140 - L1Md_T LINE L1 -1 6999 126 3 1468 267 93 0 0 chr12 115835547 115835590 -5421940 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 3 1468 2982 139 36 122 chr12 115836990 115837733 -5419797 + RLTR13C1 LTR ERVK 343 1023 0 3 1468 679 311 34 7 chr12 115837843 115838138 -5419392 + Lx7 LINE L1 5592 5894 -1802 3 1468 364 309 86 0 chr12 115838817 115838969 -5418561 + Lx8 LINE L1 6213 6377 -1096 3 1468 809 294 44 15 chr12 115839013 115839351 -5418179 + Lx7 LINE L1 6992 7339 -357 3 1468 5407 76 4 3 chr12 115839376 115840128 -5417402 + RLTR22_Mus LTR ERVK 1 753 -1055 4 1468 768 22 0 0 chr12 115840286 115840376 -5417154 + (GA)n Simple_repeat Simple_repeat 2 91 0 4 1468 415 244 8 16 chr12 115840385 115840506 -5417024 - RMER17A-int LTR ERVK -1606 122 3 4 1468 4507 133 56 19 chr12 115840508 115841288 -5416242 - RMER17D2 LTR ERVK 0 809 1 4 1468 1038 305 90 42 chr12 115841546 115842159 -5415371 - Lx8 LINE L1 -332 7141 6500 4 1468 674 287 83 10 chr12 115842154 115842467 -5415063 + Lx7 LINE L1 7074 7409 -287 4 1468 252 222 104 67 chr12 115842496 115842660 -5414870 + Lx7 LINE L1 7507 7676 -20 4 1468 2796 249 24 32 chr12 115844583 115845549 -5411981 - L1_Mur2 LINE L1 -406 5471 4514 4 1468 7669 54 2 3 chr12 115845903 115847087 -5410443 - L1Md_F2 LINE L1 0 6582 5404 4 1468 1196 234 49 46 chr12 115847948 115848253 -5409277 + RLTR18 LTR ERVK 307 612 -4 4 1468 218 214 12 0 chr12 115848324 115848408 -5409122 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1468 3109 195 19 42 chr12 115848628 115849350 -5408180 - Lx4B LINE L1 -4 7054 6349 4 1468 494 204 92 55 chr12 115849371 115849609 -5407921 - Lx7 LINE L1 -4 7692 7446 4 1468 415 266 18 0 chr12 115849894 115850007 -5407523 + RLTR40 LTR ERVK 1 115 -702 4 1468 287 335 60 12 chr12 115851987 115852153 -5405377 - Lx8 LINE L1 -154 7319 7146 4 1468 906 309 82 14 chr12 115852362 115852861 -5404669 - Lx8 LINE L1 -327 7146 6614 4 1468 507 33 0 0 chr12 115852868 115852929 -5404601 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1468 26 0 0 0 chr12 115853056 115853082 -5404448 + AT_rich Low_complexity Low_complexity 1 26 0 4 1468 1032 227 27 44 chr12 115853094 115853389 -5404141 - Lx3C LINE L1 -4 6972 6683 4 1468 261 0 0 0 chr12 115854872 115854901 -5402629 + (ATG)n Simple_repeat Simple_repeat 1 29 0 4 1468 522 0 0 0 chr12 115855452 115855510 -5402020 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1468 1241 240 14 20 chr12 115856426 115856774 -5400756 + Lx4B LINE L1 6695 7040 -18 4 1468 459 0 0 0 chr12 115856774 115856825 -5400705 + (TTAA)n Simple_repeat Simple_repeat 4 54 0 4 1468 925 180 27 62 chr12 115856838 115857063 -5400467 + RLTR28 LTR ERVL 210 426 -98 4 1468 515 250 48 0 chr12 115857066 115857190 -5400340 + ETnERV2-int LTR ERVK 7074 7203 -203 4 1468 436 202 11 0 chr12 115857528 115857617 -5399913 + RLTR28 LTR ERVL 419 508 -16 4 1468 352 320 235 2 chr12 115859169 115859620 -5397910 - Lx8 LINE L1 -337 7136 6581 4 1468 22 35 0 0 chr12 115860102 115860131 -5397399 + AT_rich Low_complexity Low_complexity 1 29 0 4 1468 869 38 0 0 chr12 115860297 115860402 -5397128 + L1Md_F2 LINE L1 5482 5586 -297 4 1468 7298 69 24 5 chr12 115860402 115861367 -5396163 + L1Md_F2 LINE L1 5588 6570 -12 4 1468 443 228 18 0 chr12 115861589 115861703 -5395827 + Lx7 LINE L1 6992 7107 -589 4 1468 32277 72 1 16 chr12 115861744 115867129 -5390401 + L1Md_F2 LINE L1 284 5585 -298 4 183 7589 76 1 0 chr12 115867130 115868122 -5389408 + L1Md_F2 LINE L1 5588 6580 -2 4 1469 498 206 10 0 chr12 115868464 115868566 -5388964 + RLTR40 LTR ERVK 16 118 -699 4 1469 312 27 0 0 chr12 115869688 115869725 -5387805 + (ATG)n Simple_repeat Simple_repeat 2 38 0 4 1469 543 43 0 0 chr12 115869993 115870063 -5387467 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1469 2353 129 106 0 chr12 115870071 115870488 -5387042 - L1_Mus4 LINE L1 -458 6178 5718 4 1469 2714 146 0 2 chr12 115870949 115871389 -5386141 - Lx LINE L1 -168 6486 6048 4 1469 296 93 0 0 chr12 115871378 115871421 -5386109 + Lx LINE L1 5652 5694 -960 4 1469 2621 116 40 38 chr12 115871421 115871895 -5385635 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1469 55832 8 1 5 chr12 115871895 115878398 -5379132 + IAPEz-int LTR ERVK 8 6481 0 4 1469 2634 114 40 38 chr12 115878398 115878872 -5378658 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1469 967 128 6 0 chr12 115878872 115879036 -5378494 + Lx LINE L1 5689 5853 -801 4 1469 230 0 0 0 chr12 115879376 115879405 -5378125 - L1Md_T LINE L1 -285 6297 6269 4 1469 265 314 56 56 chr12 115879408 115879533 -5377997 - RMER13A LTR ERVK -735 125 1 4 1469 3540 211 37 44 chr12 115879537 115880399 -5377131 - MERVK26-int LTR ERVK -3 6916 6061 4 1469 2076 50 4 0 chr12 115880601 115880863 -5376667 - L1Md_F2 LINE L1 0 6582 6320 4 1469 2926 260 58 30 chr12 115881366 115882485 -5375045 - L1_Mur2 LINE L1 -340 5537 4388 4 1469 1700 243 91 41 chr12 115882871 115883454 -5374076 + RLTR18 LTR ERVK 5 616 0 4 1469 312 83 0 0 chr12 115883536 115883584 -5373946 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1469 266 271 106 8 chr12 115883837 115883960 -5373570 - Lx7 LINE L1 0 7696 7562 4 1469 258 220 10 52 chr12 115883960 115884056 -5373474 + A-rich Low_complexity Low_complexity 5 96 0 4 1469 472 202 28 19 chr12 115884233 115884339 -5373191 + RLTR40 LTR ERVK 9 115 -702 4 1469 1125 78 0 0 chr12 115885596 115885839 -5371691 + (GAA)n Simple_repeat Simple_repeat 1 243 0 4 1469 243 103 0 0 chr12 115885839 115885878 -5371652 + (ATG)n Simple_repeat Simple_repeat 1 39 0 4 1469 491 31 0 15 chr12 115886127 115886193 -5371337 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1469 24 0 0 0 chr12 115886845 115886869 -5370661 + AT_rich Low_complexity Low_complexity 1 24 0 4 1469 790 305 66 18 chr12 115886990 115887384 -5370146 - Lx8 LINE L1 -300 7173 6761 4 1469 818 299 69 16 chr12 115887973 115888350 -5369180 + Lx7 LINE L1 6999 7395 -301 4 1469 513 0 0 0 chr12 115888371 115888428 -5369102 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1469 277 200 44 11 chr12 115888428 115888519 -5369011 + (TTTG)n Simple_repeat Simple_repeat 2 95 0 4 1469 297 164 0 0 chr12 115889657 115889730 -5367800 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1469 237 342 89 9 chr12 115890594 115890818 -5366712 - Lx8 LINE L1 -820 6653 6412 4 1469 1288 215 101 13 chr12 115890844 115891221 -5366309 + Lx4B LINE L1 5426 5835 -42 4 1469 1748 183 24 0 chr12 115891220 115891753 -5365777 - L1_Mur2 LINE L1 -5759 953 350 4 1469 2564 232 93 18 chr12 115891754 115891844 -5365686 + Lx4B LINE L1 6226 6335 -723 4 1469 246 32 0 0 chr12 115891844 115891875 -5365655 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1469 2564 232 93 18 chr12 115891875 115892556 -5364974 + Lx4B LINE L1 6336 7054 -4 4 1469 544 292 42 26 chr12 115892643 115893064 -5364466 + Lx7 LINE L1 5488 5887 -1586 4 1469 373 90 30 0 chr12 115893124 115893191 -5364339 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1469 267 294 19 70 chr12 115893195 115893352 -5364178 + Lx6 LINE L1 7136 7284 -176 4 1469 22 0 0 0 chr12 115893427 115893449 -5364081 + AT_rich Low_complexity Low_complexity 1 22 0 4 1469 1389 246 77 44 chr12 115893497 115893926 -5363604 + RLTR18 LTR ERVK 174 616 0 4 1469 225 0 0 0 chr12 115894124 115894149 -5363381 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1469 21 71 0 0 chr12 115894184 115894226 -5363304 + AT_rich Low_complexity Low_complexity 1 42 0 4 1469 1062 88 0 33 chr12 115894285 115894437 -5363093 - B1_Mus1 SINE Alu 0 148 2 4 1469 225 161 0 0 chr12 115894547 115894588 -5362942 + A-rich Low_complexity Low_complexity 1 41 0 4 1469 236 28 0 53 chr12 115894588 115894626 -5362904 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 1469 225 161 0 0 chr12 115894626 115894640 -5362890 + A-rich Low_complexity Low_complexity 42 55 0 4 1469 294 305 9 0 chr12 115895021 115895126 -5362404 + RLTR40 LTR ERVK 9 114 -703 4 1469 375 127 0 0 chr12 115896311 115896374 -5361156 + (ATG)n Simple_repeat Simple_repeat 1 63 0 4 1469 4550 91 8 2 chr12 115896426 115897056 -5360474 - L1_Mus2 LINE L1 0 6566 5933 4 1469 603 74 0 0 chr12 115897226 115897307 -5360223 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1469 763 285 92 42 chr12 115898039 115898464 -5359066 - Lx8 LINE L1 -322 7151 6706 4 1469 22 0 0 0 chr12 115898509 115898531 -5358999 + AT_rich Low_complexity Low_complexity 1 22 0 4 1469 405 278 104 25 chr12 115898540 115898820 -5358710 + Lx7 LINE L1 5593 5894 -1802 4 1469 747 312 45 53 chr12 115898961 115899469 -5358061 + Lx7 LINE L1 6991 7494 -202 4 1469 1224 207 21 14 chr12 115900446 115900730 -5356800 + Lx4B LINE L1 6696 6981 -77 4 1469 1388 211 20 23 chr12 115900849 115901154 -5356376 + RLTR28 LTR ERVL 203 506 -18 4 1469 4406 181 13 123 chr12 115901329 115902043 -5355487 - Lx LINE L1 -44 6610 5901 4 1469 734 174 0 16 chr12 115902043 115902166 -5355364 + ORR1A2 LTR MaLR 156 276 -51 4 1469 4406 181 13 123 chr12 115902166 115902480 -5355050 - Lx LINE L1 -44 5900 5587 4 1469 813 157 10 8 chr12 115902504 115902658 -5354872 + ORR1A2-int LTR MaLR 1822 1962 -1 4 1469 1803 153 44 6 chr12 115902659 115902974 -5354556 + ORR1A2 LTR MaLR 1 327 0 4 1469 465 238 8 45 chr12 115903132 115903264 -5354266 + RLTR40 LTR ERVK 1 127 -690 4 1469 234 164 0 0 chr12 115904905 115904960 -5352570 + (ATG)n Simple_repeat Simple_repeat 1 55 0 4 1469 327 297 174 31 chr12 115905146 115905443 -5352087 + Lx7 LINE L1 5539 5910 -1563 4 1469 1433 209 0 22 chr12 115905538 115905861 -5351669 - Lx2 LINE L1 0 6997 6682 4 1469 292 291 54 6 chr12 115905868 115906034 -5351496 + Lx7 LINE L1 7252 7425 -271 4 1469 339 78 0 0 chr12 115906034 115906085 -5351445 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1469 315 0 0 0 chr12 115906085 115906119 -5351411 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1469 870 254 65 11 chr12 115906293 115906568 -5350962 - Lx LINE L1 -4 6972 6683 4 1469 270 0 0 0 chr12 115906574 115906604 -5350926 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 1469 611 246 63 41 chr12 115907038 115907261 -5350269 - RMER13B LTR ERVK -372 270 1 4 1469 279 0 0 0 chr12 115907320 115907351 -5350179 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1469 1065 177 11 5 chr12 115907354 115907541 -5349989 + ORR1A3-int LTR MaLR 1642 1829 -134 4 1469 4584 208 16 12 chr12 115907547 115908576 -5348954 - Lx LINE L1 -8 6646 5613 4 1469 726 190 52 39 chr12 115908580 115908781 -5348749 + ORR1A2-int LTR MaLR 1822 1962 -1 4 1469 1664 182 25 6 chr12 115908781 115909102 -5348428 + ORR1A2 LTR MaLR 1 327 0 4 1469 496 222 8 45 chr12 115909261 115909393 -5348137 + RLTR40 LTR ERVK 1 127 -690 4 1469 251 150 17 0 chr12 115910992 115911052 -5346478 + (ATG)n Simple_repeat Simple_repeat 1 61 0 4 1469 428 301 39 19 chr12 115911268 115911567 -5345963 + Lx7 LINE L1 5555 5930 -361 4 1469 1274 216 4 4 chr12 115911673 115911943 -5345587 - Lx LINE L1 -2 6995 6726 4 1469 611 219 98 23 chr12 115911945 115912118 -5345412 - RMER13B LTR ERVK -719 189 4 4 1469 537 129 0 0 chr12 115912189 115912282 -5345248 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 1469 1156 148 5 11 chr12 115912282 115912473 -5345057 + ORR1A3-int LTR MaLR 1639 1828 -135 4 1469 4880 201 13 11 chr12 115912474 115913538 -5343992 - Lx LINE L1 -2 6652 5587 4 1469 1451 234 34 24 chr12 115913552 115914029 -5343501 + ORR1A2 LTR MaLR 1 387 -7 4 1469 347 294 8 31 chr12 115914193 115914323 -5343207 + RLTR40 LTR ERVK 1 127 -690 4 1469 237 146 0 0 chr12 115915768 115915816 -5341714 + (ATG)n Simple_repeat Simple_repeat 3 50 0 4 1469 287 298 65 0 chr12 115916066 115916190 -5341340 + L1_Mur3 LINE L1 5610 5741 -139 5 1469 207 0 0 0 chr12 115916456 115916479 -5341051 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 1469 261 0 0 0 chr12 115916493 115916522 -5341008 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 1469 1364 220 17 3 chr12 115916522 115916823 -5340707 - Lx2 LINE L1 -11 6986 6682 5 1469 526 14 0 27 chr12 115916993 115917066 -5340464 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1469 920 269 55 4 chr12 115917226 115917498 -5340032 - Lx LINE L1 -2 6974 6689 5 1469 621 258 106 37 chr12 115917953 115918171 -5339359 - RMER13B LTR ERVK -372 270 5 5 1469 339 44 0 0 chr12 115918239 115918284 -5339246 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1469 428 103 0 33 chr12 115918284 115918373 -5339157 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1469 1118 133 11 11 chr12 115918375 115918565 -5338965 + ORR1A1-int LTR MaLR 1468 1657 -135 5 1469 4550 206 16 10 chr12 115918573 115919556 -5337974 - Lx LINE L1 -8 6646 5658 5 1469 1557 191 50 21 chr12 115919556 115919925 -5337605 + ORR1A2 LTR MaLR 8 371 -13 5 1469 454 204 20 10 chr12 115920105 115920204 -5337326 + RLTR40 LTR ERVK 23 122 -695 5 1469 183 167 0 0 chr12 115921655 115921697 -5335833 + (ATG)n Simple_repeat Simple_repeat 3 44 0 5 1469 257 323 32 55 chr12 115921951 115922233 -5335297 + Lx9 LINE L1 5613 5895 -1801 5 1469 1499 181 43 3 chr12 115922340 115922644 -5334886 - Lx2 LINE L1 0 6997 6682 5 1469 485 88 12 0 chr12 115922820 115922900 -5334630 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1469 24 0 0 0 chr12 115923038 115923062 -5334468 + AT_rich Low_complexity Low_complexity 1 24 0 5 1469 1111 235 54 7 chr12 115923065 115923344 -5334186 - Lx3C LINE L1 -2 6974 6683 5 1469 628 244 77 40 chr12 115923766 115924010 -5333520 - RMER13B LTR ERVK -341 301 5 5 1469 495 0 0 0 chr12 115924092 115924147 -5333383 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1469 726 159 2 20 chr12 115924147 115924299 -5333231 + ORR1A1-int LTR MaLR 1466 1587 -205 5 1469 3606 126 9 11 chr12 115924301 115924872 -5332658 - L1_Mus1 LINE L1 0 6567 5998 5 1469 6707 87 19 1 chr12 115924872 115925836 -5331694 - L1Md_F2 LINE L1 -15 6567 5587 5 1469 3170 69 0 0 chr12 115925837 115926271 -5331259 + L1Md_F2 LINE L1 5139 5572 -311 5 1469 26054 134 10 2 chr12 115926268 115928053 -5329477 - L1_Mus1 LINE L1 -556 6011 4206 5 1469 405 0 0 0 chr12 115928053 115928098 -5329432 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1469 26054 137 5 2 chr12 115928098 115929942 -5327588 - L1_Mus1 LINE L1 -1678 4205 2360 5 1469 294 19 94 0 chr12 115929942 115929995 -5327535 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 5 1469 26054 137 5 2 chr12 115929995 115931025 -5326505 - L1_Mus1 LINE L1 -3524 2359 1330 5 1469 239 93 23 0 chr12 115931069 115931112 -5326418 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1469 256 150 0 10 chr12 115931112 115931163 -5326367 + ORR1A2-int LTR MaLR 1639 1676 -287 5 1469 3132 120 86 32 chr12 115931229 115931620 -5325910 - LTRIS2 LTR ERV1 0 564 143 5 1469 3837 96 2 2 chr12 115931620 115932132 -5325398 + RLTR1B LTR ERV1 1 512 0 5 1469 3132 120 86 32 chr12 115932132 115932275 -5325255 - LTRIS2 LTR ERV1 -422 142 1 5 1469 303 372 37 7 chr12 115932494 115932789 -5324741 + Lx7 LINE L1 5592 5895 -1801 5 1469 1714 197 0 0 chr12 115932896 115933211 -5324319 - Lx2 LINE L1 -1 6996 6682 5 1469 285 244 84 42 chr12 115933217 115933384 -5324146 + Lx7 LINE L1 7250 7423 -273 5 1469 291 28 0 0 chr12 115933385 115933421 -5324109 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1469 872 266 89 15 chr12 115933587 115933858 -5323672 - Lx3C LINE L1 -2 6974 6684 5 1469 635 226 31 25 chr12 115934322 115934481 -5323049 - RMER13B LTR ERVK -716 192 33 5 1469 453 141 0 0 chr12 115934575 115934660 -5322870 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1469 959 223 10 15 chr12 115934660 115934856 -5322674 + ORR1A2-int LTR MaLR 1635 1829 -134 5 1469 4035 216 19 12 chr12 115934856 115935817 -5321713 - Lx LINE L1 -3 6651 5685 5 1469 290 289 0 0 chr12 115935817 115935900 -5321630 + ORR1A2-int LTR MaLR 1877 1959 -4 5 1469 1466 184 32 7 chr12 115935903 115936182 -5321348 + ORR1A2 LTR MaLR 1 286 -41 5 1469 234 0 0 0 chr12 115936187 115936213 -5321317 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 1469 467 291 59 38 chr12 115936396 115936602 -5320928 - RMER13B LTR ERVK -340 302 48 5 1469 300 27 0 0 chr12 115936687 115936724 -5320806 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1469 708 159 0 16 chr12 115936724 115936852 -5320678 + ORR1A2-int LTR MaLR 1466 1591 -201 5 1469 1520 33 27 0 chr12 115936852 115937035 -5320495 - B2_Mm1a SINE B2 -4 189 2 5 1469 13360 121 12 2 chr12 115937042 115939928 -5317602 - L1_Mus1 LINE L1 -1 6566 3651 5 1469 279 224 15 0 chr12 115939926 115939993 -5317537 - L1_Mus1 LINE L1 -6376 240 173 5 1469 502 127 0 0 chr12 115939997 115940076 -5317454 + ORR1A2-int LTR MaLR 1751 1829 -134 5 1469 4468 209 17 11 chr12 115940076 115941073 -5316457 - Lx LINE L1 -2 6652 5650 5 1469 1551 178 41 19 chr12 115941124 115941444 -5316086 + ORR1A2 LTR MaLR 1 327 0 5 1469 354 299 15 23 chr12 115941601 115941731 -5315799 + RLTR40 LTR ERVK 1 129 -688 5 1469 359 357 11 0 chr12 115943437 115943619 -5313911 + Lx7 LINE L1 5592 5775 -1921 5 1469 1006 253 4 4 chr12 115943839 115944109 -5313421 - Lx LINE L1 0 6997 6728 5 1469 682 223 56 22 chr12 115944113 115944292 -5313238 - RMER13B LTR ERVK -719 189 5 5 1469 456 168 0 0 chr12 115944363 115944464 -5313066 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1469 1042 184 16 10 chr12 115944465 115944657 -5312873 + ORR1A3-int LTR MaLR 1636 1828 -135 5 1469 4632 201 22 13 chr12 115944658 115945674 -5311856 - Lx LINE L1 -2 6652 5628 5 1469 640 272 10 55 chr12 115945674 115945876 -5311654 + ORR1A2-int LTR MaLR 1767 1959 -4 5 1469 1448 198 28 9 chr12 115945879 115946200 -5311330 + ORR1A2 LTR MaLR 1 327 0 5 1469 1163 73 0 6 chr12 115946254 115946419 -5311111 - L1_Mm LINE L1 -2238 3645 3482 5 1469 233 218 0 18 chr12 115947659 115947715 -5309815 + (ATG)n Simple_repeat Simple_repeat 1 55 0 5 1469 394 319 46 43 chr12 115947967 115948249 -5309281 + Lx7 LINE L1 5613 5895 -1801 5 1469 1708 182 6 3 chr12 115948354 115948669 -5308861 - Lx2 LINE L1 0 6997 6682 5 1469 308 43 22 0 chr12 115948846 115948892 -5308638 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1469 28 0 0 0 chr12 115949019 115949047 -5308483 + AT_rich Low_complexity Low_complexity 1 28 0 5 1469 1064 258 46 4 chr12 115949048 115949328 -5308202 - Lx3C LINE L1 -2 6974 6683 5 1469 570 253 74 47 chr12 115949774 115949991 -5307539 - RMER13B LTR ERVK -372 270 6 5 1469 765 33 0 0 chr12 115950059 115950151 -5307379 + (TC)n Simple_repeat Simple_repeat 2 93 0 5 1469 704 197 0 7 chr12 115950178 115950316 -5307214 + ORR1A1-int LTR MaLR 1462 1598 -194 5 1469 6991 128 32 4 chr12 115950321 115952150 -5305380 - L1_Mus1 LINE L1 -11 6556 4677 5 1469 22751 99 7 10 chr12 115952170 115954552 -5302978 - L1Md_F2 LINE L1 -4 6578 4206 5 1469 306 0 0 0 chr12 115954552 115954586 -5302944 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1469 22751 105 8 9 chr12 115954586 115956495 -5301035 - L1Md_F2 LINE L1 -1678 4205 2297 5 1469 16477 99 2 7 chr12 115956493 115960077 -5297453 + L1Md_F2 LINE L1 107 3628 -2255 5 1469 3218 71 4 2 chr12 115960073 115960523 -5297007 + L1Md_F2 LINE L1 5136 5586 -297 5 1469 7922 54 1 0 chr12 115960524 115961513 -5296017 + L1Md_F2 LINE L1 5588 6577 -5 5 1469 402 325 42 46 chr12 115963080 115963364 -5294166 + Lx7 LINE L1 5613 5895 -1801 5 1469 1685 176 10 3 chr12 115963471 115963785 -5293745 - Lx2 LINE L1 0 6997 6682 5 1469 276 30 0 0 chr12 115963957 115963990 -5293540 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1469 28 0 0 0 chr12 115964119 115964147 -5293383 + AT_rich Low_complexity Low_complexity 1 28 0 5 1469 1105 221 58 7 chr12 115964148 115964426 -5293104 - Lx3C LINE L1 -2 6974 6683 5 1469 596 241 86 45 chr12 115964629 115964872 -5292658 - RMER13B LTR ERVK -341 301 5 5 1469 492 18 0 0 chr12 115964942 115964999 -5292531 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1469 759 159 0 8 chr12 115964999 115965126 -5292404 + ORR1A1-int LTR MaLR 1466 1591 -201 5 1469 6526 120 1 1 chr12 115965126 115966609 -5290921 - L1_Mus1 LINE L1 0 6567 5099 5 1469 26052 88 5 19 chr12 115966609 115971577 -5285953 - L1Md_A LINE L1 0 6582 1691 5 1469 8234 86 5 19 chr12 115971580 115972824 -5284706 + L1Md_F2 LINE L1 4359 5585 -298 5 1469 7743 65 0 4 chr12 115972825 115973812 -5283718 + L1Md_F2 LINE L1 5587 6569 -13 5 1469 627 14 0 0 chr12 115973813 115973885 -5283645 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1469 261 155 0 0 chr12 115975612 115975670 -5281860 + (ATG)n Simple_repeat Simple_repeat 1 58 0 5 1469 457 307 34 14 chr12 115975892 115976175 -5281355 + Lx7 LINE L1 5604 5930 -361 5 1469 1256 207 4 4 chr12 115976282 115976553 -5280977 - Lx LINE L1 -2 6995 6725 5 1469 528 199 151 30 chr12 115976554 115976720 -5280810 - RMER13B LTR ERVK -719 189 4 5 1469 375 184 0 0 chr12 115976791 115976878 -5280652 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1469 1031 176 10 5 chr12 115976883 115977077 -5280453 + ORR1A1-int LTR MaLR 1463 1657 -135 5 1469 2238 241 15 18 chr12 115977078 115977683 -5279847 - Lx LINE L1 -2 6652 6050 5 1469 671 208 8 18 chr12 115977683 115977849 -5279681 + ORR1A2 LTR MaLR 178 339 -7 5 1469 358 299 33 26 chr12 115978013 115978164 -5279366 + RLTR40 LTR ERVK 1 152 -665 5 1469 180 361 14 0 chr12 115978776 115978848 -5278682 + L3 LINE CR1 3524 3596 -893 5 1469 189 159 0 0 chr12 115979430 115979474 -5278056 + (ATG)n Simple_repeat Simple_repeat 1 44 0 5 1469 279 290 18 0 chr12 115979726 115979838 -5277692 + Lx9 LINE L1 5613 5727 -1917 5 1469 1662 182 6 3 chr12 115980114 115980429 -5277101 - Lx2 LINE L1 0 6997 6682 5 1469 434 61 15 0 chr12 115980605 115980671 -5276859 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1469 24 0 0 0 chr12 115980808 115980832 -5276698 + AT_rich Low_complexity Low_complexity 1 24 0 5 1469 1121 242 51 0 chr12 115980836 115981109 -5276421 - Lx LINE L1 -7 6969 6683 5 1469 629 258 106 37 chr12 115981556 115981774 -5275756 - RMER13B LTR ERVK -372 270 5 5 1469 582 41 0 0 chr12 115981842 115981915 -5275615 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1469 570 95 0 0 chr12 115981915 115982009 -5275521 + (TG)n Simple_repeat Simple_repeat 2 96 0 5 1469 1038 167 5 11 chr12 115982012 115982200 -5275330 + ORR1A3-int LTR MaLR 1642 1828 -135 5 1469 4344 209 18 9 chr12 115982201 115983162 -5274368 - Lx LINE L1 -1 6653 5685 5 1469 1562 193 49 22 chr12 115983162 115983558 -5273972 + ORR1A2 LTR MaLR 8 371 -13 5 1469 399 217 21 11 chr12 115983750 115983843 -5273687 + RLTR40 LTR ERVK 29 122 -695 5 1469 189 159 0 0 chr12 115985296 115985340 -5272190 + (ATG)n Simple_repeat Simple_repeat 1 44 0 5 1469 261 325 53 50 chr12 115985591 115985873 -5271657 + Lx7 LINE L1 5613 5895 -1801 5 1469 1710 176 6 3 chr12 115985980 115986294 -5271236 - Lx2 LINE L1 0 6997 6683 6 1469 416 62 16 0 chr12 115986466 115986530 -5271000 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1469 26 0 0 0 chr12 115986664 115986690 -5270840 + AT_rich Low_complexity Low_complexity 1 26 0 6 1469 1179 238 50 4 chr12 115986693 115986972 -5270558 - Lx3C LINE L1 -2 6974 6683 6 1469 558 275 68 41 chr12 115987419 115987637 -5269893 - RMER13B LTR ERVK -372 270 5 6 1469 697 175 0 16 chr12 115987734 115987862 -5269668 + ORR1A1-int LTR MaLR 1462 1587 -205 6 1469 6997 87 2 1 chr12 115987885 115987896 -5269634 - L1Md_F2 LINE L1 0 6582 6572 6 1469 3696 128 0 10 chr12 115987896 115988472 -5269058 - L1_Mus1 LINE L1 0 6567 5998 6 1469 6997 87 2 1 chr12 115988472 115989455 -5268075 - L1Md_F2 LINE L1 -11 6571 5588 6 1469 3238 65 0 0 chr12 115989456 115989890 -5267640 + L1Md_F2 LINE L1 5139 5572 -311 6 1469 19822 141 10 0 chr12 115989887 115991676 -5265854 - L1_Mus1 LINE L1 -556 6011 4210 6 1469 285 98 0 0 chr12 115991676 115991717 -5265813 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1469 19822 147 5 0 chr12 115991717 115993563 -5263967 - L1_Mus1 LINE L1 -1674 4209 2349 6 1469 306 20 39 19 chr12 115993564 115993616 -5263914 + (TTG)n Simple_repeat Simple_repeat 2 54 0 6 1469 679 235 7 0 chr12 115993654 115993807 -5263723 - Lx3C LINE L1 -140 6836 6683 6 1469 636 234 69 42 chr12 115994254 115994472 -5263058 - RMER13B LTR ERVK -372 270 5 6 1469 180 97 0 0 chr12 115994542 115994573 -5262957 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1469 708 173 8 8 chr12 115994573 115994701 -5262829 + ORR1A1-int LTR MaLR 1466 1593 -199 6 1469 3658 127 2 11 chr12 115994727 115995298 -5262232 - L1_Mus1 LINE L1 0 6567 6002 6 1469 5945 69 11 1 chr12 115995299 115996100 -5261430 - L1Md_F3 LINE L1 -16 6568 5760 6 1469 210 176 0 0 chr12 115996890 115996941 -5260589 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1469 22 0 0 0 chr12 115997138 115997160 -5260370 + AT_rich Low_complexity Low_complexity 1 22 0 6 1469 321 317 93 18 chr12 115997805 115998030 -5259500 - Lx8 LINE L1 -820 6653 6412 6 1469 735 229 80 9 chr12 115998056 115998281 -5259249 + Lx2B LINE L1 5426 5666 -211 6 1469 295 98 0 0 chr12 115998315 115998368 -5259162 + Lx2B LINE L1 5789 5841 -1217 6 183 1755 186 22 0 chr12 115998367 115998900 -5258630 - L1_Mur2 LINE L1 -5759 953 350 6 1470 2547 235 86 18 chr12 115998901 115999678 -5257852 + Lx4B LINE L1 6226 7055 -3 6 1470 280 312 20 20 chr12 115999899 115999997 -5257533 + Lx7 LINE L1 5592 5689 -2007 6 1470 279 283 40 20 chr12 116000000 116000148 -5257382 + Lx7 LINE L1 5659 5832 -1864 1 1470 189 118 59 0 chr12 116000247 116000298 -5257232 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1470 334 262 35 70 chr12 116000298 116000470 -5257060 + Lx6 LINE L1 7119 7284 -176 3 1470 1393 246 77 44 chr12 116000620 116001049 -5256481 + RLTR18 LTR ERVK 174 616 0 4 1470 1062 88 0 33 chr12 116001388 116001540 -5255990 - B1_Mus1 SINE Alu 0 148 2 5 1470 302 156 0 32 chr12 116001650 116001743 -5255787 + A-rich Low_complexity Low_complexity 1 90 0 6 1470 306 295 9 0 chr12 116002118 116002223 -5255307 + RLTR40 LTR ERVK 9 114 -703 7 1470 546 137 0 0 chr12 116003394 116003489 -5254041 + (ATG)n Simple_repeat Simple_repeat 1 95 0 8 1470 4471 96 10 2 chr12 116003549 116004177 -5253353 - L1_Mus2 LINE L1 -1 6565 5933 9 1470 739 294 82 33 chr12 116005104 116005529 -5252001 - Lx LINE L1 -322 7151 6706 1 1470 21 0 0 0 chr12 116005574 116005595 -5251935 + AT_rich Low_complexity Low_complexity 1 21 0 1 1470 395 281 100 25 chr12 116005604 116005885 -5251645 + Lx7 LINE L1 5593 5894 -1802 1 1470 715 334 61 46 chr12 116006025 116006700 -5250830 + Lx7 LINE L1 6991 7675 -21 1 1470 1242 204 21 14 chr12 116007524 116007808 -5249722 + Lx4B LINE L1 6696 6981 -77 1 1470 1394 208 20 23 chr12 116007924 116008229 -5249301 + RLTR28 LTR ERVL 203 506 -18 1 1470 2900 213 3 26 chr12 116008404 116009054 -5248476 - Lx LINE L1 -44 6610 5976 1 1470 734 187 20 27 chr12 116009054 116009241 -5248289 + ORR1A2 LTR MaLR 89 277 -52 1 1470 1973 119 0 6 chr12 116009241 116009555 -5247975 - Lx2 LINE L1 -1099 5898 5587 1 1470 797 162 10 8 chr12 116009579 116009733 -5247797 + ORR1A2-int LTR MaLR 1822 1962 -1 1 1470 1678 147 89 7 chr12 116009734 116010036 -5247494 + ORR1A2 LTR MaLR 1 327 0 1 1470 485 163 9 55 chr12 116010216 116010326 -5247204 + RLTR40 LTR ERVK 23 127 -690 1 1470 222 180 0 0 chr12 116011961 116012022 -5245508 + (ATG)n Simple_repeat Simple_repeat 1 61 0 1 1470 412 303 58 22 chr12 116012194 116012417 -5245113 + Lx7 LINE L1 5586 5816 -481 2 1470 1502 199 0 22 chr12 116012602 116012925 -5244605 - Lx2 LINE L1 0 6997 6682 2 1470 323 286 58 12 chr12 116012932 116013105 -5244425 + Lx7 LINE L1 7252 7432 -264 2 1470 366 61 0 0 chr12 116013122 116013171 -5244359 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1470 957 240 61 7 chr12 116013332 116013609 -5243921 - Lx LINE L1 -2 6974 6683 2 1470 378 0 0 0 chr12 116013615 116013657 -5243873 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 1470 537 267 60 32 chr12 116014090 116014315 -5243215 - RMER13B LTR ERVK -369 273 1 2 1470 453 84 0 0 chr12 116014376 116014447 -5243083 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1470 1031 197 0 11 chr12 116014450 116014640 -5242890 + ORR1A3-int LTR MaLR 1642 1829 -134 2 1470 4733 211 18 11 chr12 116014645 116015697 -5241833 - Lx LINE L1 -8 6646 5587 2 1470 657 226 6 0 chr12 116015712 116015869 -5241661 + ORR1A2-int LTR MaLR 1822 1956 -7 2 1470 1587 187 30 7 chr12 116015875 116016171 -5241359 + ORR1A2 LTR MaLR 1 303 -24 2 1470 1161 142 43 0 chr12 116016171 116016382 -5241148 + L1Md_A LINE L1 243 462 -6262 2 1470 946 222 5 5 chr12 116016377 116016599 -5240931 - Lx LINE L1 -49 6948 6727 3 1470 544 224 107 40 chr12 116016599 116016776 -5240754 - RMER13B LTR ERVK -716 192 4 3 1470 669 126 0 0 chr12 116016847 116016958 -5240572 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 1470 1047 163 11 5 chr12 116016958 116017149 -5240381 + ORR1A1-int LTR MaLR 1466 1657 -135 3 1470 4991 196 12 11 chr12 116017150 116018212 -5239318 - Lx LINE L1 -2 6652 5590 3 1470 1588 198 38 25 chr12 116018220 116018690 -5238840 + ORR1A2 LTR MaLR 1 387 -7 3 1470 356 309 20 26 chr12 116018854 116019007 -5238523 + RLTR40 LTR ERVK 1 152 -665 3 1470 258 125 0 0 chr12 116020427 116020475 -5237055 + (ATG)n Simple_repeat Simple_repeat 3 50 0 3 1470 319 253 31 6 chr12 116020685 116020837 -5236693 + Lx7 LINE L1 5539 5730 -1914 3 1470 297 0 0 0 chr12 116021114 116021147 -5236383 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1470 1437 208 16 3 chr12 116021163 116021467 -5236063 - Lx2 LINE L1 -8 6989 6682 3 1470 553 14 0 26 chr12 116021637 116021713 -5235817 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 1470 1035 249 54 7 chr12 116021873 116022152 -5235378 - Lx LINE L1 -2 6974 6683 4 1470 643 252 106 37 chr12 116022599 116022817 -5234713 - RMER13B LTR ERVK -372 270 5 4 1470 585 0 0 0 chr12 116022885 116022950 -5234580 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1470 726 67 0 0 chr12 116022950 116023054 -5234476 + (TG)n Simple_repeat Simple_repeat 2 106 0 4 1470 1001 171 11 5 chr12 116023057 116023245 -5234285 + ORR1A1-int LTR MaLR 1469 1657 -135 4 1470 4403 198 35 14 chr12 116023246 116023369 -5234161 - Lx LINE L1 -1 6653 6531 4 1470 189 0 0 0 chr12 116023369 116023390 -5234140 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1470 4403 198 35 14 chr12 116023390 116024252 -5233278 - Lx LINE L1 -124 6530 5650 4 1470 585 0 0 0 chr12 116024332 116024397 -5233133 + (TTTA)n Simple_repeat Simple_repeat 3 67 0 4 1470 937 104 0 0 chr12 116024397 116024531 -5232999 - B1_Mus2 SINE Alu -12 135 2 4 1470 4414 38 0 0 chr12 116024823 116025344 -5232186 - L1Md_T LINE L1 0 6582 6062 4 1470 239 0 0 0 chr12 116025344 116025374 -5232156 + MusHAL1 LINE L1 1274 1303 -1409 5 1470 1387 160 45 11 chr12 116025396 116025662 -5231868 + ORR1A2 LTR MaLR 53 327 0 5 1470 433 268 16 8 chr12 116025820 116025944 -5231586 + RLTR40 LTR ERVK 1 125 -692 5 1470 204 143 0 0 chr12 116027395 116027437 -5230093 + (ATG)n Simple_repeat Simple_repeat 3 44 0 5 1470 268 268 23 0 chr12 116027691 116027777 -5229753 + Lx7 LINE L1 5613 5701 -1943 5 1470 1786 162 6 3 chr12 116028082 116028397 -5229133 - Lx2 LINE L1 0 6997 6682 5 1470 290 107 18 0 chr12 116028578 116028634 -5228896 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1470 24 0 0 0 chr12 116028772 116028796 -5228734 + AT_rich Low_complexity Low_complexity 1 24 0 5 1470 1097 256 47 0 chr12 116028800 116029074 -5228456 - Lx3C LINE L1 -7 6969 6683 5 1470 595 260 64 37 chr12 116029522 116029740 -5227790 - RMER13B LTR ERVK -372 270 5 5 1470 180 97 0 0 chr12 116029810 116029841 -5227689 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1470 716 166 23 16 chr12 116029841 116030001 -5227529 + ORR1A2-int LTR MaLR 1466 1593 -199 6 1470 3681 120 2 11 chr12 116030008 116030574 -5226956 - L1_Mus1 LINE L1 -9 6558 5998 6 1470 6873 77 16 0 chr12 116030579 116031540 -5225990 - L1Md_F2 LINE L1 -19 6563 5588 6 1470 3336 53 0 0 chr12 116031542 116031976 -5225554 + L1Md_F2 LINE L1 5139 5572 -311 6 1470 26016 132 6 12 chr12 116031973 116036694 -5220836 - L1_Mus1 LINE L1 -556 6011 1327 6 1470 239 93 23 0 chr12 116036739 116036782 -5220748 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1470 240 158 0 0 chr12 116036782 116036820 -5220710 + ORR1A2-int LTR MaLR 1639 1676 -287 6 1470 3129 120 89 25 chr12 116036899 116037285 -5220245 - LTRIS2 LTR ERV1 0 564 144 6 1470 3779 96 2 19 chr12 116037285 116037806 -5219724 + RLTR1B LTR ERV1 1 512 0 6 1470 3129 120 89 25 chr12 116037806 116037947 -5219583 - LTRIS2 LTR ERV1 -421 143 3 6 1470 289 362 26 9 chr12 116038148 116038463 -5219067 + Lx7 LINE L1 5539 5895 -1801 6 1470 1733 178 3 3 chr12 116038568 116038883 -5218647 - Lx2 LINE L1 -1 6996 6682 6 1470 269 250 84 42 chr12 116038889 116039056 -5218474 + Lx7 LINE L1 7250 7423 -273 6 1470 423 52 0 0 chr12 116039057 116039115 -5218415 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1470 916 255 89 15 chr12 116039283 116039554 -5217976 - Lx3C LINE L1 -3 6973 6683 7 1470 657 243 61 22 chr12 116040017 116040198 -5217332 - RMER13B LTR ERVK -716 192 5 7 1470 396 118 0 0 chr12 116040284 116040352 -5217178 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1470 954 218 11 16 chr12 116040352 116040543 -5216987 + ORR1A2-int LTR MaLR 1639 1828 -135 6 1470 3878 225 21 15 chr12 116040544 116041506 -5216024 - Lx LINE L1 -2 6652 5685 7 1470 269 301 0 0 chr12 116041506 116041589 -5215941 + ORR1A2-int LTR MaLR 1877 1959 -4 6 1470 1639 185 25 6 chr12 116041592 116041913 -5215617 + ORR1A2 LTR MaLR 1 327 0 6 1470 416 206 31 0 chr12 116042093 116042190 -5215340 + RLTR40 LTR ERVK 23 122 -695 7 1470 232 238 0 16 chr12 116043622 116043686 -5213844 + (ATG)n Simple_repeat Simple_repeat 2 64 0 7 1470 418 291 71 29 chr12 116043905 116044202 -5213328 + Lx7 LINE L1 5591 5895 -1578 7 1470 1124 239 4 4 chr12 116044307 116044580 -5212950 - Lx LINE L1 0 6997 6725 7 1470 685 206 55 33 chr12 116044581 116044762 -5212768 - RMER13B LTR ERVK -719 189 5 7 1470 380 206 8 0 chr12 116044834 116044960 -5212570 + (TG)n Simple_repeat Simple_repeat 2 128 0 8 1470 1067 186 5 10 chr12 116044960 116045155 -5212375 + ORR1A3-int LTR MaLR 1635 1828 -135 8 1470 4844 198 23 16 chr12 116045156 116046249 -5211281 - Lx LINE L1 -2 6652 5546 7 1470 648 234 7 0 chr12 116046251 116046388 -5211142 + ORR1A2-int LTR MaLR 1822 1959 -4 8 1470 1479 197 37 31 chr12 116046391 116046716 -5210814 + ORR1A2 LTR MaLR 1 327 0 8 1470 278 322 34 0 chr12 116046873 116046991 -5210539 + RLTR40 LTR ERVK 1 122 -695 8 1470 204 149 0 0 chr12 116048438 116048485 -5209045 + (ATG)n Simple_repeat Simple_repeat 1 47 0 8 1470 787 173 16 8 chr12 116048713 116048903 -5208627 - Lx2A1 LINE L1 -446 5866 5647 8 1470 788 222 17 27 chr12 116048903 116049135 -5208395 + ORR1A2-int LTR MaLR 1822 1956 -7 8 1470 1574 188 25 6 chr12 116049141 116049462 -5208068 + ORR1A2 LTR MaLR 1 327 0 8 1470 552 231 15 0 chr12 116049622 116049752 -5207778 + RLTR40 LTR ERVK 1 132 -685 8 1470 228 170 0 0 chr12 116051356 116051409 -5206121 + (ATG)n Simple_repeat Simple_repeat 1 53 0 8 1470 489 323 44 13 chr12 116051619 116051917 -5205613 + Lx7 LINE L1 5592 5898 -1798 8 1470 1232 210 15 4 chr12 116052021 116052289 -5205241 - Lx LINE L1 -2 6995 6725 9 1470 418 266 95 27 chr12 116052290 116052437 -5205093 - RMER13B LTR ERVK -719 189 33 9 1470 501 150 0 0 chr12 116052534 116052634 -5204896 + (TG)n Simple_repeat Simple_repeat 1 100 0 9 1470 1059 170 10 5 chr12 116052637 116052832 -5204698 + ORR1A1-int LTR MaLR 1462 1657 -135 9 1470 4674 202 14 18 chr12 116052833 116053900 -5203630 - Lx LINE L1 -2 6652 5590 9 1470 1495 222 41 24 chr12 116053925 116054390 -5203140 + ORR1A2 LTR MaLR 1 371 -13 9 1470 447 267 17 0 chr12 116054551 116054671 -5202859 + RLTR40 LTR ERVK 1 122 -695 9 1470 251 207 0 17 chr12 116056104 116056163 -5201367 + (ATG)n Simple_repeat Simple_repeat 1 58 0 9 1470 235 299 67 63 chr12 116056443 116056682 -5200848 + Lx9 LINE L1 5644 5883 -1761 9 1470 1776 151 13 19 chr12 116056803 116057121 -5200409 - Lx2 LINE L1 0 6997 6682 9 1470 27 29 0 0 chr12 116057316 116057350 -5200180 + AT_rich Low_complexity Low_complexity 1 34 0 9 1470 1099 250 50 4 chr12 116057470 116057751 -5199779 - Lx LINE L1 0 6976 6683 1 1470 573 267 64 43 chr12 116058232 116058420 -5199110 - RMER13B LTR ERVK -716 192 1 1 1470 201 39 0 0 chr12 116058496 116058522 -5199008 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1470 767 173 2 8 chr12 116058522 116058677 -5198853 + ORR1A1-int LTR MaLR 1466 1598 -194 1 1470 27065 133 15 19 chr12 116058677 116065070 -5192460 - L1_Mus1 LINE L1 -28 6539 177 1 1470 535 101 0 0 chr12 116065078 116065157 -5192373 + ORR1A1-int LTR MaLR 1751 1829 -134 1 1470 4224 213 27 10 chr12 116065162 116065277 -5192253 - Lx LINE L1 -8 6646 6532 1 1470 591 15 0 0 chr12 116065277 116065345 -5192185 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1470 4224 213 27 10 chr12 116065345 116066194 -5191336 - Lx LINE L1 -123 6531 5667 1 1470 1546 196 35 6 chr12 116066249 116066567 -5190963 + ORR1A2 LTR MaLR 1 327 0 1 1470 274 274 42 0 chr12 116066749 116066844 -5190686 + RLTR40 LTR ERVK 35 133 -684 1 1470 273 155 0 0 chr12 116068270 116068328 -5189202 + (ATG)n Simple_repeat Simple_repeat 1 58 0 1 1470 289 308 15 11 chr12 116068594 116068747 -5188783 + Lx8 LINE L1 5603 5748 -99 1 1470 1742 169 6 3 chr12 116068960 116069274 -5188256 - Lx2 LINE L1 0 6997 6683 1 1470 232 111 37 0 chr12 116069448 116069502 -5188028 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1470 23 33 0 0 chr12 116069633 116069663 -5187867 + AT_rich Low_complexity Low_complexity 1 30 0 1 1470 834 292 54 0 chr12 116069664 116069941 -5187589 - Lx LINE L1 -2 6974 6683 1 1470 567 274 48 38 chr12 116070419 116070605 -5186925 - RMER13B LTR ERVK -716 192 5 1 1470 528 16 0 0 chr12 116070679 116070740 -5186790 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1470 1047 172 10 10 chr12 116070740 116070940 -5186590 + ORR1A3-int LTR MaLR 1639 1838 -125 1 1470 4297 218 26 10 chr12 116070940 116071064 -5186466 - Lx LINE L1 -1 6653 6517 1 1470 474 18 0 0 chr12 116071064 116071119 -5186411 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1470 4297 218 26 10 chr12 116071119 116071981 -5185549 - Lx LINE L1 -138 6516 5651 1 1470 1266 218 41 6 chr12 116072035 116072349 -5185181 + ORR1A2 LTR MaLR 3 327 0 1 1470 370 277 16 40 chr12 116072515 116072639 -5184891 + RLTR40 LTR ERVK 9 129 -688 1 1470 1111 88 0 20 chr12 116072714 116072864 -5184666 + B1_Mus1 SINE Alu 2 148 0 1 1470 220 196 0 0 chr12 116074242 116074288 -5183242 + (ATG)n Simple_repeat Simple_repeat 3 48 0 1 1470 260 266 24 0 chr12 116074547 116074629 -5182901 + Lx7 LINE L1 5616 5700 -1944 1 1470 1265 191 50 0 chr12 116074923 116075185 -5182345 - Lx2 LINE L1 0 6997 6723 1 1470 536 29 14 0 chr12 116075185 116075255 -5182275 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1470 23 0 0 0 chr12 116075389 116075412 -5182118 + AT_rich Low_complexity Low_complexity 1 23 0 1 1470 1023 236 62 0 chr12 116075413 116075688 -5181842 - Lx3C LINE L1 -2 6974 6683 1 1470 510 247 53 48 chr12 116076169 116076356 -5181174 - RMER13B LTR ERVK -716 192 5 1 1470 215 278 8 0 chr12 116076428 116076554 -5180976 + (TG)n Simple_repeat Simple_repeat 2 128 0 1 1470 3192 52 20 0 chr12 116077271 116077672 -5179858 - RLTR10A LTR ERVK -2 409 1 1 1470 243 307 10 29 chr12 116078640 116078744 -5178786 - Lx9 LINE L1 -1168 6476 6375 1 1470 563 315 61 27 chr12 116078959 116079106 -5178424 + B3A SINE B2 9 160 -38 1 1470 2647 136 5 0 chr12 116079108 116079527 -5178003 + BGLII LTR ERVK 1 421 0 1 1470 288 261 34 47 chr12 116079625 116079774 -5177756 + RMER3D-int LTR ERVK 331 477 -2365 1 1470 683 24 0 12 chr12 116079824 116079910 -5177620 + (GGGAA)n Simple_repeat Simple_repeat 4 88 0 1 1470 341 293 103 41 chr12 116079915 116080061 -5177469 + HAL1-3A_ME LINE L1 2285 2439 -419 1 1470 1080 102 7 0 chr12 116080105 116080252 -5177278 + B1_Mus1 SINE Alu 1 148 0 1 1470 1815 210 111 89 chr12 116080293 116080958 -5176572 + RMER3D-int LTR ERVK 1014 1693 -1149 1 1470 896 172 30 116 chr12 116080926 116081254 -5176276 + RMER3D-int LTR ERVK 1891 2190 -652 1 1470 180 182 0 0 chr12 116082673 116082717 -5174813 + (ATG)n Simple_repeat Simple_repeat 1 44 0 1 1470 276 281 11 2 chr12 116082928 116083080 -5174450 + Lx9 LINE L1 5539 5726 -1918 1 1470 1745 172 6 3 chr12 116083358 116083673 -5173857 - Lx2 LINE L1 0 6997 6682 1 1470 452 59 15 0 chr12 116083854 116083922 -5173608 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1470 24 0 0 0 chr12 116084059 116084083 -5173447 + AT_rich Low_complexity Low_complexity 1 24 0 1 1470 1092 245 51 0 chr12 116084086 116084359 -5173171 - Lx LINE L1 -7 6969 6683 1 1470 646 249 127 46 chr12 116084780 116085024 -5172506 - RMER13B LTR ERVK -341 301 5 1 1470 618 14 0 0 chr12 116085092 116085163 -5172367 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1470 432 77 0 0 chr12 116085163 116085227 -5172303 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1470 1071 155 11 5 chr12 116085230 116085418 -5172112 + ORR1A1-int LTR MaLR 1469 1657 -135 1 1470 4688 196 20 12 chr12 116085419 116086417 -5171113 - Lx LINE L1 -1 6653 5648 1 1470 1513 186 45 10 chr12 116086467 116086776 -5170754 + ORR1A2 LTR MaLR 8 327 0 1 1470 454 204 20 10 chr12 116086956 116087055 -5170475 + RLTR40 LTR ERVK 23 122 -695 1 1470 330 0 0 0 chr12 116087563 116087601 -5169929 - L1_Mm LINE L1 -2461 3422 3385 1 1470 5534 18 0 0 chr12 116087599 116088267 -5169263 + L1Md_T LINE L1 4919 5586 -297 1 1470 8183 40 8 1 chr12 116088268 116089256 -5168274 + L1Md_T LINE L1 5588 6582 0 1 1470 186 150 0 0 chr12 116090213 116090253 -5167277 + (ATG)n Simple_repeat Simple_repeat 2 41 0 1 1470 280 276 23 42 chr12 116090510 116090686 -5166844 + Lx9 LINE L1 5613 5783 -1861 1 1470 1736 169 10 3 chr12 116090900 116091214 -5166316 - Lx2 LINE L1 0 6997 6682 1 1470 2952 55 10 5 chr12 116091263 116091647 -5165883 - RLTR10 LTR ERVK -4 386 1 1 1470 16144 27 1 0 chr12 116091649 116093590 -5163940 - RLTR10-int LTR ERVK -3 1984 41 1 1470 2952 55 10 5 chr12 116093606 116093990 -5163540 - RLTR10 LTR ERVK -4 386 1 1 1470 533 110 10 0 chr12 116094126 116094226 -5163304 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1470 1111 245 50 4 chr12 116094391 116094670 -5162860 - Lx3C LINE L1 -2 6974 6683 1 1470 617 242 69 42 chr12 116095118 116095336 -5162194 - RMER13B LTR ERVK -372 270 5 1 1470 286 243 65 98 chr12 116095337 116095404 -5162126 + ORR1A1-int LTR MaLR 1469 1541 -251 1 1470 498 17 0 0 chr12 116095404 116095463 -5162067 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1470 441 0 0 0 chr12 116095463 116095511 -5162019 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1470 286 243 65 98 chr12 116095511 116095565 -5161965 + ORR1A1-int LTR MaLR 1542 1586 -206 1 1470 3646 122 3 14 chr12 116095595 116096171 -5161359 - L1_Mus1 LINE L1 0 6567 5998 1 1470 7049 83 2 0 chr12 116096176 116097151 -5160379 - L1Md_F2 LINE L1 -19 6563 5587 1 1470 3248 62 0 0 chr12 116097152 116097586 -5159944 + L1Md_F2 LINE L1 5139 5572 -311 1 1470 23360 129 61 11 chr12 116097583 116099161 -5158369 - L1_Mus1 LINE L1 -556 6011 4196 1 1470 351 0 0 0 chr12 116099161 116099200 -5158330 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1470 23360 136 55 14 chr12 116099200 116102139 -5155391 - L1_Mus1 LINE L1 -1688 4195 1290 1 1470 239 93 23 0 chr12 116102149 116102192 -5155338 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1470 256 150 0 10 chr12 116102192 116102243 -5155287 + ORR1A3-int LTR MaLR 1639 1676 -287 1 1470 2998 111 112 29 chr12 116102309 116102697 -5154833 - LTRIS2 LTR ERV1 0 564 142 1 1470 3724 88 4 36 chr12 116102697 116103226 -5154304 + RLTR1B LTR ERV1 1 512 0 1 1470 2998 111 112 29 chr12 116103226 116103356 -5154174 - LTRIS2 LTR ERV1 -423 141 3 1 1470 312 355 22 11 chr12 116103577 116103759 -5153771 + Lx7 LINE L1 5592 5775 -1921 1 1470 1734 178 3 3 chr12 116103979 116104294 -5153236 - Lx LINE L1 -1 6996 6682 1 1470 281 240 87 43 chr12 116104300 116104461 -5153069 + Lx7 LINE L1 7250 7417 -279 1 1470 309 26 0 0 chr12 116104468 116104506 -5153024 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1470 207 0 0 0 chr12 116104535 116104558 -5152972 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1470 994 224 88 22 chr12 116104676 116104950 -5152580 - Lx LINE L1 -2 6974 6683 1 1470 2882 12 3 29 chr12 116105157 116105507 -5152023 + L1Md_A LINE L1 6242 6582 0 1 1470 695 237 62 11 chr12 116105859 116106038 -5151492 - RMER13B LTR ERVK -716 192 5 1 1470 636 115 0 0 chr12 116106110 116106214 -5151316 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1470 884 202 38 11 chr12 116106215 116106400 -5151130 + ORR1A1-int LTR MaLR 1468 1657 -135 1 1470 4232 213 17 11 chr12 116106401 116107382 -5150148 - Lx LINE L1 -2 6652 5666 1 1470 307 154 0 0 chr12 116107394 116107446 -5150084 + ORR1A2-int LTR MaLR 1908 1959 -4 1 1470 1513 183 29 7 chr12 116107449 116107730 -5149800 + ORR1A2 LTR MaLR 1 287 -40 1 1470 587 272 64 43 chr12 116107992 116108180 -5149350 - RMER13B LTR ERVK -716 192 1 1 1470 444 19 0 0 chr12 116108248 116108301 -5149229 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1470 682 223 3 19 chr12 116108301 116108458 -5149072 + ORR1A1-int LTR MaLR 1466 1604 -188 1 1470 10521 121 88 2 chr12 116108458 116111090 -5146440 - L1_Mus1 LINE L1 -28 6539 3651 1 1470 279 224 15 0 chr12 116111088 116111155 -5146375 - L1_Mus1 LINE L1 -6376 240 173 1 1470 453 127 0 0 chr12 116111159 116111230 -5146300 + ORR1A1-int LTR MaLR 1751 1821 -142 1 1470 4342 209 18 11 chr12 116111230 116112191 -5145339 - Lx LINE L1 -1 6653 5687 1 1470 231 312 36 36 chr12 116112193 116112276 -5145254 + ORR1A2-int LTR MaLR 1877 1959 -4 1 1470 1535 201 25 6 chr12 116112279 116112600 -5144930 + ORR1A2 LTR MaLR 1 327 0 1 1470 378 291 15 23 chr12 116112757 116112887 -5144643 + RLTR40 LTR ERVK 1 129 -688 1 1470 350 321 67 21 chr12 116114593 116114904 -5142626 + Lx7 LINE L1 5591 5910 -1563 1 1470 960 256 4 11 chr12 116114996 116115268 -5142262 - Lx LINE L1 0 6997 6728 1 1470 627 234 55 33 chr12 116115272 116115453 -5142077 - RMER13B LTR ERVK -719 189 5 1 1470 711 144 0 0 chr12 116115525 116115664 -5141866 + (TG)n Simple_repeat Simple_repeat 2 140 0 1 1470 1022 189 10 10 chr12 116115665 116115858 -5141672 + ORR1A3-int LTR MaLR 1636 1828 -135 1 1470 4490 199 26 15 chr12 116115859 116116873 -5140657 - Lx LINE L1 -2 6652 5628 1 1470 647 272 10 55 chr12 116116873 116117075 -5140455 + ORR1A2-int LTR MaLR 1767 1959 -4 1 1470 1422 193 34 16 chr12 116117078 116117399 -5140131 + ORR1A2 LTR MaLR 1 327 0 1 1470 1174 73 0 0 chr12 116117453 116117617 -5139913 - L1_Mm LINE L1 -2238 3645 3482 1 1470 216 0 0 0 chr12 116117617 116117641 -5139889 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1470 208 236 0 18 chr12 116118900 116118956 -5138574 + (ATG)n Simple_repeat Simple_repeat 1 55 0 1 1470 388 305 50 39 chr12 116119208 116119488 -5138042 + Lx7 LINE L1 5613 5895 -1801 1 1470 1651 189 6 3 chr12 116119592 116119906 -5137624 - Lx2 LINE L1 -1 6996 6682 1 1470 400 48 32 0 chr12 116120083 116120146 -5137384 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1470 26 0 0 0 chr12 116120271 116120297 -5137233 + AT_rich Low_complexity Low_complexity 1 26 0 1 1470 1144 244 47 0 chr12 116120298 116120577 -5136953 - Lx3C LINE L1 -2 6974 6683 1 1470 548 261 74 47 chr12 116121021 116121239 -5136291 - RMER13B LTR ERVK -372 270 5 1 1470 675 0 0 0 chr12 116121307 116121382 -5136148 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 1470 225 0 0 0 chr12 116121382 116121406 -5136124 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1470 739 167 8 8 chr12 116121406 116121539 -5135991 + ORR1A1-int LTR MaLR 1466 1598 -194 2 1470 7044 123 34 4 chr12 116121550 116123374 -5134156 - L1_Mus1 LINE L1 -13 6554 4677 2 1470 23394 100 5 3 chr12 116123394 116127667 -5129863 - L1Md_F2 LINE L1 -5 6577 2294 2 183 30288 90 6 5 chr12 116127663 116132978 -5124552 + L1Md_F2 LINE L1 310 5586 -297 2 1471 7934 53 1 2 chr12 116132978 116133963 -5123567 + L1Md_F2 LINE L1 5587 6570 -12 2 1471 225 0 0 0 chr12 116133990 116134015 -5123515 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1471 377 332 54 32 chr12 116135546 116135823 -5121707 + Lx7 LINE L1 5613 5895 -1801 2 1471 1647 179 6 3 chr12 116135930 116136244 -5121286 - Lx2 LINE L1 -1 6996 6682 2 1471 485 16 16 0 chr12 116136417 116136479 -5121051 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1471 26 0 0 0 chr12 116136609 116136635 -5120895 + AT_rich Low_complexity Low_complexity 1 26 0 2 1471 1149 228 58 0 chr12 116136636 116136912 -5120618 - Lx LINE L1 -2 6974 6683 2 1471 535 270 73 41 chr12 116137355 116137575 -5119955 - RMER13B LTR ERVK -369 273 5 2 1471 387 0 0 0 chr12 116137645 116137688 -5119842 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1471 752 226 22 11 chr12 116137688 116137871 -5119659 + ORR1A1-int LTR MaLR 1466 1650 -142 2 1471 23999 125 8 3 chr12 116137871 116140895 -5116635 - L1_Mus1 LINE L1 -52 6515 3478 2 1471 323 73 18 0 chr12 116140895 116140950 -5116580 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 2 1471 23999 135 11 4 chr12 116140950 116142720 -5114810 - L1_Mus1 LINE L1 -2406 3477 1692 2 1471 8521 93 8 6 chr12 116142723 116143047 -5114483 + L1_Mm LINE L1 4359 4678 -1205 2 1471 183 42 0 0 chr12 116143047 116143071 -5114459 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1471 8521 93 8 6 chr12 116143071 116144022 -5113508 + L1_Mm LINE L1 4679 5637 -246 2 1471 3428 104 10 23 chr12 116144026 116144549 -5112981 + L1Md_F2 LINE L1 6067 6582 0 2 1471 4007 136 39 5 chr12 116144550 116145823 -5111707 - L1_Mus1 LINE L1 -4185 1698 380 2 1471 492 139 0 0 chr12 116145831 116145910 -5111620 + ORR1A1-int LTR MaLR 1751 1829 -134 2 1471 4373 213 28 10 chr12 116145910 116146032 -5111498 - Lx LINE L1 -3 6651 6531 2 1471 423 0 0 0 chr12 116146032 116146079 -5111451 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1471 4373 213 28 10 chr12 116146079 116146937 -5110593 - Lx LINE L1 -124 6530 5656 2 1471 242 196 20 0 chr12 116146937 116146988 -5110542 + ORR1A2-int LTR MaLR 1908 1959 -4 2 1471 1835 151 28 6 chr12 116146991 116147311 -5110219 + ORR1A2 LTR MaLR 1 327 0 2 1471 321 260 96 0 chr12 116147476 116147580 -5109950 + RLTR40 LTR ERVK 9 122 -695 2 1471 235 204 0 0 chr12 116149029 116149078 -5108452 + (ATG)n Simple_repeat Simple_repeat 2 50 0 2 1471 393 314 53 30 chr12 116149147 116149606 -5107924 + Lx7 LINE L1 5476 5930 -370 2 1471 1196 228 4 4 chr12 116149696 116149969 -5107561 - Lx LINE L1 0 6997 6725 2 1471 518 269 55 39 chr12 116149970 116150152 -5107378 - RMER13B LTR ERVK -719 189 5 2 1471 260 259 0 0 chr12 116150224 116150282 -5107248 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1471 309 114 0 0 chr12 116150293 116150337 -5107193 + ORR1A3-int LTR MaLR 1785 1828 -135 2 1471 4974 191 23 16 chr12 116150338 116151431 -5106099 - Lx LINE L1 -3 6651 5546 2 1471 617 268 0 0 chr12 116151433 116151571 -5105959 + ORR1A2-int LTR MaLR 1822 1959 -4 2 1471 1562 195 28 6 chr12 116151574 116151894 -5105636 + ORR1A2 LTR MaLR 1 327 0 2 1471 446 246 18 0 chr12 116152060 116152170 -5105360 + RLTR40 LTR ERVK 11 122 -695 2 1471 216 149 0 0 chr12 116153615 116153662 -5103868 + (ATG)n Simple_repeat Simple_repeat 1 47 0 2 1471 379 319 79 24 chr12 116153895 116154187 -5103343 + Lx7 LINE L1 5588 5895 -1801 2 1471 1390 189 7 4 chr12 116154295 116154566 -5102964 - Lx2 LINE L1 -1 6996 6725 2 1471 470 79 13 0 chr12 116154566 116154642 -5102888 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1471 1124 230 61 0 chr12 116154811 116155089 -5102441 - Lx3C LINE L1 -2 6974 6680 2 1471 593 318 59 26 chr12 116157335 116157487 -5100043 + B3A SINE B2 8 164 -34 2 1471 2754 120 7 0 chr12 116157487 116157905 -5099625 + BGLII LTR ERVK 1 421 0 2 1471 325 258 5 48 chr12 116158002 116158151 -5099379 + RMER3D-int LTR ERVK 652 760 -2082 2 1471 428 160 23 0 chr12 116158279 116158394 -5099136 + RMER3D-int LTR ERVK 487 562 -2280 2 1471 575 97 25 42 chr12 116158402 116158521 -5099009 + G-rich Low_complexity Low_complexity 2 118 0 2 1471 261 347 0 0 chr12 116158535 116158610 -5098920 + polypurine Low_complexity Low_complexity 2 76 0 2 1471 313 283 148 27 chr12 116158610 116158759 -5098771 + HAL1-3A_ME LINE L1 2285 2451 -407 2 1471 1151 81 0 13 chr12 116158788 116158938 -5098592 + B1_Mus1 SINE Alu 1 148 0 2 1471 243 98 32 16 chr12 116158944 116159006 -5098524 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 2 1471 1975 198 120 68 chr12 116159025 116159658 -5097872 + RMER3D-int LTR ERVK 1014 1679 -1163 2 1471 2722 209 98 16 chr12 116159673 116160620 -5096910 + MYSERV16_I-int LTR ERVK 1302 2326 0 2 1471 1366 141 52 0 chr12 116160620 116160869 -5096661 + BGLII LTR ERVK 1 262 -159 2 1471 3497 153 30 5 chr12 116160876 116161518 -5096012 - Lx LINE L1 -410 6244 5587 2 1471 835 171 4 2 chr12 116161542 116161693 -5095837 + ORR1A2-int LTR MaLR 1822 1959 -4 2 1471 1713 148 54 10 chr12 116161697 116162010 -5095520 + ORR1A2 LTR MaLR 1 327 0 2 1471 519 238 53 72 chr12 116162168 116162376 -5095154 + RLTR40 LTR ERVK 1 204 -613 2 1471 567 0 0 0 chr12 116163047 116163110 -5094420 + (TCC)n Simple_repeat Simple_repeat 2 64 0 2 1471 240 172 0 0 chr12 116163974 116164032 -5093498 + (ATG)n Simple_repeat Simple_repeat 1 58 0 2 1471 314 333 29 19 chr12 116164216 116164424 -5093106 + Lx7 LINE L1 5539 5774 -1922 2 1471 230 222 0 0 chr12 116164453 116164498 -5093032 + L1M2 LINE L1 5886 5930 -370 2 1471 1483 201 6 22 chr12 116164608 116164929 -5092601 - Lx2 LINE L1 0 6997 6682 2 1471 259 306 53 6 chr12 116164935 116165106 -5092424 + Lx7 LINE L1 7251 7429 -267 2 1471 233 75 25 0 chr12 116165107 116165147 -5092383 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1471 1203 196 29 43 chr12 116165218 116165496 -5092034 - RLTR46 LTR ERVK -5 315 42 2 1471 969 263 56 0 chr12 116165618 116165888 -5091642 - Lx LINE L1 -9 6967 6683 2 1471 697 239 68 37 chr12 116166325 116166552 -5090978 - RMER13B LTR ERVK -357 285 5 2 1471 312 27 0 0 chr12 116166622 116166659 -5090871 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1471 933 223 0 11 chr12 116166662 116166852 -5090678 + ORR1A3-int LTR MaLR 1642 1829 -134 2 1471 4946 200 17 10 chr12 116166852 116167912 -5089618 - Lx LINE L1 -1 6653 5587 2 1471 782 225 13 11 chr12 116167890 116168090 -5089440 + ORR1A2-int LTR MaLR 1822 1962 -1 2 1471 1858 150 25 6 chr12 116168090 116168411 -5089119 + ORR1A2 LTR MaLR 1 327 0 2 1471 504 213 8 47 chr12 116168569 116168697 -5088833 + RLTR40 LTR ERVK 5 127 -690 2 1471 707 76 0 0 chr12 116168770 116168862 -5088668 + L1Md_F2 LINE L1 5495 5586 -297 2 1471 8247 42 1 0 chr12 116168862 116169857 -5087673 + L1Md_F2 LINE L1 5587 6582 0 2 1471 186 192 0 0 chr12 116171383 116171435 -5086095 + (ATG)n Simple_repeat Simple_repeat 1 52 0 2 1471 393 295 56 30 chr12 116171664 116171954 -5085576 + Lx7 LINE L1 5611 5910 -1563 2 1471 523 228 112 37 chr12 116172034 116172046 -5085484 - RMER13B LTR ERVK -704 204 191 2 1471 1291 204 4 4 chr12 116172046 116172317 -5085213 - Lx2 LINE L1 -2 6995 6725 2 1471 523 228 112 37 chr12 116172317 116172491 -5085039 - RMER13B LTR ERVK -718 190 4 2 1471 369 177 0 0 chr12 116172562 116172641 -5084889 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1471 1031 167 15 15 chr12 116172648 116172843 -5084687 + ORR1A2-int LTR MaLR 1634 1828 -135 2 1471 4789 199 13 17 chr12 116172844 116173914 -5083616 - Lx LINE L1 -2 6652 5587 2 1471 1561 214 30 22 chr12 116173936 116174404 -5083126 + ORR1A2 LTR MaLR 1 371 -13 2 1471 433 244 25 8 chr12 116174565 116174685 -5082845 + RLTR40 LTR ERVK 1 122 -695 2 1471 195 170 0 0 chr12 116176131 116176178 -5081352 + (ATG)n Simple_repeat Simple_repeat 1 47 0 2 1471 284 334 40 14 chr12 116176431 116176711 -5080819 + Lx9 LINE L1 5613 5902 -1742 2 1471 1828 147 6 19 chr12 116176818 116177138 -5080392 - Lx2 LINE L1 0 6997 6682 2 1471 329 0 0 24 chr12 116177308 116177350 -5080180 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1471 1194 219 50 4 chr12 116177513 116177792 -5079738 - Lx LINE L1 -2 6974 6683 2 1471 621 252 62 40 chr12 116178236 116178455 -5079075 - RMER13B LTR ERVK -372 270 5 2 1471 459 0 0 0 chr12 116178525 116178576 -5078954 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1471 1176 138 0 16 chr12 116178576 116178768 -5078762 + ORR1A3-int LTR MaLR 1639 1827 -136 2 1471 1430 240 23 26 chr12 116178769 116179196 -5078334 - Lx LINE L1 0 6654 6229 2 1471 2387 106 56 56 chr12 116179197 116179608 -5077922 + IAPLTR2a LTR ERVK 1 411 0 2 1471 331 111 0 0 chr12 116179610 116179664 -5077866 + IAPEz-int LTR ERVK 3 56 -1931 2 1471 944 149 11 11 chr12 116179678 116179854 -5077676 + IAPEz-int LTR ERVK 18 193 -6288 2 1471 262 291 0 0 chr12 116179854 116179909 -5077621 + RLTR27 LTR ERVK 221 275 -34 2 1471 226 321 0 0 chr12 116179937 116179990 -5077540 + RLTR27 LTR ERVK 223 275 -34 2 1471 3447 56 1 12 chr12 116179990 116180718 -5076812 + IAPEz-int LTR ERVK 168 662 -5819 2 1471 2077 72 0 0 chr12 116180718 116180996 -5076534 + IAPEz-int LTR ERVK 1359 1636 -4845 2 1471 5596 51 5 16 chr12 116180995 116181747 -5075783 + IAPEz-int LTR ERVK 5736 6479 -2 2 1471 2500 88 56 56 chr12 116181749 116182160 -5075370 + IAPLTR2a LTR ERVK 1 411 0 2 1471 2807 196 23 0 chr12 116182160 116182730 -5074800 - Lx LINE L1 -421 6233 5651 2 1471 1577 186 51 19 chr12 116182734 116183084 -5074446 + ORR1A2 LTR MaLR 8 371 -13 2 1471 410 237 20 10 chr12 116183273 116183371 -5074159 + RLTR40 LTR ERVK 24 122 -695 2 1471 433 240 79 85 chr12 116183707 116183871 -5073659 - MT2B LTR ERVL -264 337 175 2 1471 866 72 0 16 chr12 116183755 116183882 -5073648 - B1_Mm SINE Alu -22 125 1 2 1471 222 136 0 0 chr12 116184972 116185016 -5072514 + (ATG)n Simple_repeat Simple_repeat 1 44 0 2 1471 284 268 23 0 chr12 116185266 116185352 -5072178 + Lx7 LINE L1 5613 5701 -1943 2 1471 1789 166 6 3 chr12 116185658 116185973 -5071557 - Lx2 LINE L1 0 6997 6682 2 1471 228 296 11 0 chr12 116185979 116186067 -5071463 + Lx7 LINE L1 7250 7338 -358 2 1471 206 32 32 0 chr12 116186140 116186171 -5071359 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1471 23 33 0 0 chr12 116186301 116186331 -5071199 + AT_rich Low_complexity Low_complexity 1 30 0 2 1471 1117 231 54 0 chr12 116186332 116186609 -5070921 - Lx3C LINE L1 -2 6974 6683 2 1471 578 257 48 43 chr12 116187090 116187277 -5070253 - RMER13B LTR ERVK -716 192 5 2 1471 853 137 0 30 chr12 116187349 116187584 -5069946 + (TG)n Simple_repeat Simple_repeat 1 227 0 2 1471 1139 68 7 0 chr12 116188251 116188398 -5069132 - B1_Mus1 SINE Alu 0 148 1 2 1471 220 140 51 34 chr12 116188438 116188497 -5069033 + CT-rich Low_complexity Low_complexity 1 60 0 2 1471 318 317 121 14 chr12 116188507 116188648 -5068882 - HAL1-3A_ME LINE L1 -419 2439 2284 2 1471 443 87 0 14 chr12 116188660 116188730 -5068800 + (TTCCC)n Simple_repeat Simple_repeat 5 73 0 2 1471 507 105 48 10 chr12 116188738 116188842 -5068688 - RMER3D-int LTR ERVK -2259 583 489 2 1471 408 239 87 38 chr12 116188937 116189120 -5068410 - RMER3D-int LTR ERVK -1999 843 652 2 1471 2044 146 3 0 chr12 116189209 116189517 -5068013 - RLTR27 LTR ERVK 0 309 1 2 1471 2924 101 5 0 chr12 116189534 116189950 -5067580 - BGLII LTR ERVK -3 418 1 3 1471 738 292 0 25 chr12 116189951 116190109 -5067421 - B3A SINE B2 -37 161 8 3 1471 333 0 0 0 chr12 116191564 116191601 -5065929 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1471 1461 194 49 98 chr12 116191625 116192093 -5065437 + RMER3D-int LTR ERVK 1250 1694 -1148 3 1471 2921 204 100 10 chr12 116192089 116193029 -5064501 + MYSERV16_I-int LTR ERVK 1302 2326 0 3 1471 2300 117 91 0 chr12 116193031 116193233 -5064297 + BGLII LTR ERVK 3 206 -215 3 1471 495 48 0 0 chr12 116193233 116193295 -5064235 + (GGA)n Simple_repeat Simple_repeat 2 63 0 3 1471 2300 117 91 0 chr12 116193295 116193476 -5064054 + BGLII LTR ERVK 207 420 -1 3 1471 34 0 0 0 chr12 116193516 116193550 -5063980 + AT_rich Low_complexity Low_complexity 1 34 0 3 1471 3771 174 1 3 chr12 116194262 116194932 -5062598 - Lx2 LINE L1 -1 6996 6328 3 1471 3538 204 52 55 chr12 116195163 116196022 -5061508 + Lx5 LINE L1 6191 7047 -3 3 1471 23 0 0 0 chr12 116196208 116196231 -5061299 + AT_rich Low_complexity Low_complexity 1 23 0 3 1471 415 294 0 0 chr12 116196391 116196476 -5061054 + RLTR20A2 LTR ERVK 480 564 -14 3 1471 5416 185 6 15 chr12 116196476 116196817 -5060713 + Lx5 LINE L1 4733 5067 -810 3 1471 717 12 0 0 chr12 116196817 116196899 -5060631 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 3 1471 1328 67 0 6 chr12 116196899 116197080 -5060450 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 1471 720 0 0 0 chr12 116197080 116197160 -5060370 + (GAAAA)n Simple_repeat Simple_repeat 1 80 0 3 1471 5416 185 6 15 chr12 116197160 116197966 -5059564 + Lx5 LINE L1 5068 5870 -7 3 1471 1200 103 17 6 chr12 116197984 116198160 -5059370 + B2_Mm2 SINE B2 12 189 -6 3 1471 674 249 16 5 chr12 116198162 116198352 -5059178 + Lx5 LINE L1 5894 6085 -965 3 1471 650 244 35 52 chr12 116198480 116198709 -5058821 - Lx4B LINE L1 -11 7047 6823 3 1471 1720 286 68 14 chr12 116198706 116199447 -5058083 - Lx7 LINE L1 -418 7278 6498 3 1471 873 300 109 12 chr12 116199579 116200142 -5057388 - Lx5 LINE L1 -709 6751 5892 3 1471 7315 76 1 17 chr12 116200143 116201134 -5056396 - RLTR13D3 LTR ERVK -139 975 1 3 1471 461 266 0 0 chr12 116201134 116201262 -5056268 + Lx5 LINE L1 6451 6578 -76 3 1471 1833 125 6 2 chr12 116202132 116202436 -5055094 - L1_Mm LINE L1 -400 5483 5195 3 1471 648 210 34 0 chr12 116202818 116202937 -5054593 - ETnERV2-int LTR ERVK -214 7192 7070 3 1471 855 97 0 8 chr12 116203086 116203211 -5054319 + B1_Mm SINE Alu 22 145 -2 3 1471 221 78 14 72 chr12 116203215 116203284 -5054246 + A-rich Low_complexity Low_complexity 1 65 0 3 1471 539 112 11 0 chr12 116205065 116205154 -5052376 - L1_Mur2 LINE L1 -1409 4468 4379 3 1471 1919 266 56 37 chr12 116205549 116206116 -5051414 + RLTR18 LTR ERVK 39 616 0 3 1471 3005 215 14 28 chr12 116206445 116207172 -5050358 - Lx4B LINE L1 -4 7054 6338 3 1471 362 214 99 58 chr12 116207180 116207423 -5050107 - Lx7 LINE L1 0 7696 7444 3 1471 425 248 18 9 chr12 116207705 116207819 -5049711 + RLTR40 LTR ERVK 1 115 -702 3 1471 691 199 36 140 chr12 116208979 116209084 -5048446 - RMER17B LTR ERVK -759 199 106 3 1471 480 93 0 0 chr12 116209084 116209159 -5048371 + (CCCTAA)n Simple_repeat Simple_repeat 2 76 0 3 1471 691 199 36 140 chr12 116209159 116209275 -5048255 - RMER17B LTR ERVK -853 105 1 3 1471 440 214 44 94 chr12 116209286 116209446 -5048084 - Lx8 LINE L1 -620 6853 6702 3 1471 1163 199 58 7 chr12 116209600 116209878 -5047652 - Lx3C LINE L1 -2 6974 6683 3 1471 5339 33 2 0 chr12 116210108 116210739 -5046791 - L1Md_T LINE L1 0 6582 5951 3 1471 317 253 0 0 chr12 116212332 116212407 -5045123 - L1_Mur3 LINE L1 -348 5532 5458 3 1471 236 245 45 73 chr12 116212420 116212530 -5045000 - MER45B DNA Tip100 -391 649 543 3 1471 1990 150 0 6 chr12 116212531 116212867 -5044663 + Lx3B LINE L1 6259 6592 -381 3 1471 1811 237 82 10 chr12 116212868 116213474 -5044056 - L1_Mur3 LINE L1 -845 5035 4386 3 1471 2070 254 75 46 chr12 116213849 116214440 -5043090 + RLTR18 LTR ERVK 1 608 -8 3 1471 219 88 0 0 chr12 116214518 116214552 -5042978 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1471 327 49 0 0 chr12 116214552 116214593 -5042937 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 1471 484 251 99 22 chr12 116214837 116215069 -5042461 - Lx7 LINE L1 0 7696 7447 3 1471 441 210 60 0 chr12 116215366 116215466 -5042064 + RLTR40 LTR ERVK 9 114 -703 3 1471 195 42 0 0 chr12 116216714 116216738 -5040792 + (ATG)n Simple_repeat Simple_repeat 3 26 0 3 1471 372 94 0 0 chr12 116216753 116216806 -5040724 + (GGA)n Simple_repeat Simple_repeat 3 55 0 3 1471 588 65 0 0 chr12 116217050 116217127 -5040403 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 1471 215 132 0 54 chr12 116217164 116217220 -5040310 + T-rich Low_complexity Low_complexity 3 55 0 3 1471 25 0 0 0 chr12 116217940 116217965 -5039565 + AT_rich Low_complexity Low_complexity 1 25 0 3 1471 549 317 78 22 chr12 116218109 116218470 -5039060 - Lx8 LINE L1 -324 7149 6769 3 1471 22 0 0 0 chr12 116218547 116218569 -5038961 + AT_rich Low_complexity Low_complexity 1 22 0 3 1471 870 286 38 18 chr12 116219019 116219360 -5038170 + Lx7 LINE L1 6992 7339 -357 3 1471 597 40 0 0 chr12 116219434 116219510 -5038020 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1471 1334 233 20 12 chr12 116220504 116220847 -5036683 + Lx4B LINE L1 6696 7041 -17 3 1471 333 215 0 0 chr12 116220859 116220938 -5036592 + RLTR28 LTR ERVL 192 270 -254 3 1471 1072 322 27 0 chr12 116220981 116221351 -5036179 - Lx6 LINE L1 -59 7401 7022 3 1471 6796 131 24 3 chr12 116221380 116222503 -5035027 - Lx LINE L1 -4 6650 5505 3 1471 545 247 11 33 chr12 116222624 116222808 -5034722 - Lx7 LINE L1 -1762 5934 5755 3 1471 743 311 38 10 chr12 116222815 116223107 -5034423 - Lx6 LINE L1 -2 7458 7159 3 1471 944 291 61 4 chr12 116223132 116223411 -5034119 + Lx6 LINE L1 6849 7143 -317 3 1471 709 249 38 14 chr12 116223417 116223629 -5033901 - Lx7 LINE L1 -142 5738 5522 3 1471 282 320 52 32 chr12 116224054 116224209 -5033321 + Lx2B LINE L1 6208 6365 -1108 3 1471 534 303 114 37 chr12 116224771 116224794 -5032736 + Lx2B LINE L1 6350 6372 -282 3 1471 3053 78 2 0 chr12 116224794 116225189 -5032341 - MTA_Mm LTR MaLR 0 396 1 3 1471 8146 68 18 2 chr12 116225189 116226270 -5031260 - MTA_Mm-int LTR MaLR 0 1098 1 3 1471 3144 47 23 0 chr12 116226271 116226657 -5030873 - MTA_Mm LTR MaLR -1 395 1 3 1471 794 246 73 12 chr12 116226657 116226901 -5030629 + Lx2B LINE L1 6756 6987 -13 3 1471 783 0 0 0 chr12 116226901 116226988 -5030542 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 3 1471 1357 153 60 36 chr12 116226997 116227329 -5030201 + L1_Mur2 LINE L1 3008 3347 -2530 3 1471 6271 54 16 8 chr12 116227500 116228301 -5029229 + RLTR13C2 LTR ERVK 1 808 0 3 1471 732 254 0 65 chr12 116228442 116228627 -5028903 + RLTR18 LTR ERVK 405 577 -39 3 1471 452 252 26 0 chr12 116228771 116228886 -5028644 + RLTR40 LTR ERVK 1 118 -699 3 1471 306 0 0 0 chr12 116230398 116230432 -5027098 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1471 300 366 76 25 chr12 116230769 116231044 -5026486 - Lx8 LINE L1 -1 7472 7184 3 1471 2779 101 43 21 chr12 116231120 116231587 -5025943 + RLTR44C LTR ERVK 1 477 -25 3 1471 1077 302 85 15 chr12 116231724 116232204 -5025326 - Lx8 LINE L1 -324 7149 6636 3 1471 654 73 0 0 chr12 116232206 116232288 -5025242 - L1_Mus2 LINE L1 -318 6248 6167 3 1471 2213 92 6 28 chr12 116232288 116232614 -5024916 + L1_Mus2 LINE L1 6248 6566 0 3 1471 1017 291 37 25 chr12 116234192 116234597 -5022933 + Lx7 LINE L1 7023 7432 -264 3 1471 22 56 0 0 chr12 116234741 116234777 -5022753 + AT_rich Low_complexity Low_complexity 1 36 0 3 1471 1103 216 61 8 chr12 116234778 116235025 -5022505 - Lx3C LINE L1 -30 6946 6687 3 1471 26 50 0 0 chr12 116235025 116235065 -5022465 + AT_rich Low_complexity Low_complexity 1 40 0 3 1471 531 293 0 21 chr12 116237280 116237423 -5020107 + B1_Mus1 SINE Alu 9 148 0 3 1471 380 296 89 54 chr12 116237604 116238021 -5019509 - RLTR15 LTR ERVK -61 298 1 3 1471 810 133 4 37 chr12 116238386 116238629 -5018901 + CT-rich Low_complexity Low_complexity 1 234 0 3 1471 249 405 39 16 chr12 116238842 116239148 -5018382 + MLT-int LTR MaLR 3 315 -1420 3 1471 279 0 0 0 chr12 116239163 116239194 -5018336 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1471 1162 55 7 0 chr12 116239194 116239331 -5018199 - B1_Mus1 SINE Alu -7 141 4 3 1471 834 39 0 0 chr12 116239331 116239433 -5018097 + (TTC)n Simple_repeat Simple_repeat 2 103 0 3 1471 233 228 0 17 chr12 116239932 116239990 -5017540 + CT-rich Low_complexity Low_complexity 2 58 0 3 1471 186 43 0 0 chr12 116239991 116240014 -5017516 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1471 2488 313 50 13 chr12 116240026 116241114 -5016416 - Lx7 LINE L1 -279 7417 6290 3 1471 21 57 0 0 chr12 116243057 116243092 -5014438 + AT_rich Low_complexity Low_complexity 1 35 0 3 1471 250 354 54 0 chr12 116243960 116244115 -5013415 + MLT1-int LTR MaLR 330 582 -789 3 1471 1813 172 21 5 chr12 116244879 116245220 -5012310 - L1VL1 LINE L1 -6014 710 218 3 1471 378 172 192 0 chr12 116245357 116245456 -5012074 - Lx8 LINE L1 -664 6809 6692 3 1471 21 0 0 0 chr12 116245488 116245509 -5012021 + AT_rich Low_complexity Low_complexity 1 21 0 3 1471 354 314 40 77 chr12 116245517 116245765 -5011765 + Lx7 LINE L1 5592 5830 -1866 3 1471 1125 302 42 30 chr12 116245950 116246373 -5011157 + Lx7 LINE L1 6991 7422 -274 3 1471 195 114 0 0 chr12 116246373 116246408 -5011122 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1471 1125 302 42 30 chr12 116246408 116246485 -5011045 + Lx7 LINE L1 7423 7497 -199 3 1471 27 0 0 0 chr12 116246736 116246763 -5010767 + AT_rich Low_complexity Low_complexity 1 27 0 3 1471 23 0 0 0 chr12 116246921 116246944 -5010586 + AT_rich Low_complexity Low_complexity 1 23 0 3 1471 2448 92 19 0 chr12 116246947 116247306 -5010224 - L1_Mus3 LINE L1 -5 6633 6268 3 1471 860 28 0 9 chr12 116247307 116247415 -5010115 + (GAA)n Simple_repeat Simple_repeat 1 107 0 3 1471 1043 44 15 0 chr12 116247417 116247553 -5009977 + (GAAA)n Simple_repeat Simple_repeat 4 141 0 3 1471 1151 249 23 10 chr12 116247741 116248041 -5009489 + Lx4B LINE L1 6695 6998 -60 3 1471 5078 145 13 17 chr12 116248038 116249379 -5008151 - Lx LINE L1 -274 6380 5042 3 1471 449 311 73 6 chr12 116249382 116249560 -5007970 - Lx6 LINE L1 -471 6989 6800 3 1471 899 333 31 38 chr12 116250338 116250758 -5006772 + Lx7 LINE L1 7004 7416 -280 3 1471 387 0 0 0 chr12 116250758 116250801 -5006729 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1471 899 333 31 38 chr12 116250801 116250902 -5006628 + Lx7 LINE L1 7417 7520 -176 3 1471 935 283 54 27 chr12 116251841 116252139 -5005391 + Lx2B LINE L1 6695 7000 0 4 1471 1217 214 45 28 chr12 116252136 116252378 -5005152 + L1_Mur2 LINE L1 2992 3242 -2635 4 1471 1021 37 0 0 chr12 116252378 116252512 -5005018 + L1Md_A LINE L1 6448 6581 -1 4 1471 1217 214 45 28 chr12 116252512 116252621 -5004909 + L1_Mur2 LINE L1 3243 3349 -2528 4 1471 1615 208 22 82 chr12 116253030 116253532 -5003998 - L1_Mur3 LINE L1 -1021 4859 4388 4 1471 1585 258 78 37 chr12 116253876 116254335 -5003195 + RLTR18 LTR ERVK 139 616 0 4 1471 504 264 71 35 chr12 116254338 116254507 -5003023 + Lx7 LINE L1 6401 6575 -1121 4 1471 1156 230 0 0 chr12 116254555 116254803 -5002727 - L1_Mur3 LINE L1 -930 4950 4703 4 1471 230 288 64 17 chr12 116254906 116255079 -5002451 + L1M1 LINE L1 5695 5875 -425 4 1471 498 353 42 0 chr12 116255458 116255648 -5001882 - Lx8 LINE L1 -140 7333 7136 4 1471 363 314 74 0 chr12 116255835 116256010 -5001520 - Lx8 LINE L1 -324 7149 6962 4 1471 444 289 88 9 chr12 116256055 116256282 -5001248 - Lx8 LINE L1 -627 6846 6602 4 1471 639 317 45 7 chr12 116256659 116256951 -5000579 + Lx7 LINE L1 5592 5894 -1802 4 1471 2267 165 35 5 chr12 116257017 116257420 -5000110 - Lx3_Mus LINE L1 -613 6396 5982 4 1471 297 237 121 17 chr12 116257923 116258039 -4999491 + L1MC4a LINE L1 7678 7805 -77 4 1471 272 326 163 16 chr12 116258073 116258257 -4999273 + Lx8 LINE L1 6195 6405 -1068 4 1471 1056 293 76 13 chr12 116258274 116258671 -4998859 + Lx7 LINE L1 6994 7415 -281 4 1471 249 119 0 0 chr12 116258677 116258719 -4998811 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1471 30 45 0 0 chr12 116258862 116258906 -4998624 + AT_rich Low_complexity Low_complexity 1 44 0 4 1471 558 261 7 42 chr12 116259498 116259642 -4997888 + B1_Mus1 SINE Alu 10 148 0 4 1471 382 291 87 62 chr12 116259871 116260239 -4997291 - RLTR12B LTR ERVK -99 260 17 4 1471 968 68 8 0 chr12 116260608 116260741 -4996789 + (TC)n Simple_repeat Simple_repeat 1 134 0 4 1471 183 42 0 0 chr12 116260741 116260764 -4996766 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 183 2149 331 51 15 chr12 116260769 116261871 -4995659 - Lx7 LINE L1 -278 7418 6278 4 1472 180 135 0 0 chr12 116263117 116263154 -4994376 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1472 1856 259 31 33 chr12 116264254 116264473 -4993057 - L1_Mur3 LINE L1 -343 5537 5321 4 1472 3960 170 43 6 chr12 116264473 116265194 -4992336 + Lx3B LINE L1 6221 6968 -5 4 1472 1856 259 31 33 chr12 116265194 116265613 -4991917 - L1_Mur3 LINE L1 -560 5320 4900 4 1472 264 30 0 0 chr12 116265829 116265862 -4991668 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1472 297 0 0 0 chr12 116265862 116265894 -4991636 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1472 640 312 92 16 chr12 116266712 116266744 -4990786 - Lx8 LINE L1 -315 7158 7123 4 1472 441 0 0 0 chr12 116266744 116266793 -4990737 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1472 640 312 92 16 chr12 116266793 116267131 -4990399 - Lx8 LINE L1 -351 7122 6761 4 1472 259 200 0 133 chr12 116267134 116267159 -4990371 + ID_B1 SINE B4 140 224 0 4 1472 524 82 0 0 chr12 116267159 116267232 -4990298 + B1_Mur4 SINE Alu 78 150 0 4 1472 233 29 29 0 chr12 116267232 116267266 -4990264 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1472 242 301 23 98 chr12 116267394 116267567 -4989963 + Lx7 LINE L1 5593 5752 -1944 4 1472 1406 162 4 0 chr12 116267582 116267829 -4989701 - L1_Mus3 LINE L1 -1115 4768 4521 4 1472 7171 124 8 1 chr12 116267819 116269627 -4987903 + L1_Mus3 LINE L1 4815 6636 -2 4 1472 3508 184 16 50 chr12 116269639 116270305 -4987225 + Lx5 LINE L1 5132 5771 -106 4 1472 3267 49 2 5 chr12 116270305 116270715 -4986815 - L1Md_F2 LINE L1 -15 6567 6159 4 1472 3508 198 18 62 chr12 116270715 116271021 -4986509 + Lx5 LINE L1 5772 6084 -966 4 1472 1125 333 71 28 chr12 116271497 116272007 -4985523 - Lx5 LINE L1 -19 7031 6500 4 1472 705 205 14 104 chr12 116272011 116272223 -4985307 - RLTR8 LTR ERVK 0 365 173 4 1472 184 178 100 88 chr12 116272228 116272308 -4985222 + L2 LINE L2 2502 2582 -837 4 1472 4759 89 14 6 chr12 116272308 116272950 -4984580 - SRV_MM-int LTR ERVK -3943 2224 1578 4 1472 3115 106 6 61 chr12 116272949 116273443 -4984087 - SRV_MM-int LTR ERVK -5569 598 132 4 1472 1863 201 5 5 chr12 116273443 116273854 -4983676 - L1_Mur3 LINE L1 -770 5110 4700 4 1472 1538 72 90 5 chr12 116274587 116274809 -4982721 - L1_Mus1 LINE L1 0 6567 6327 4 1472 306 0 0 0 chr12 116274810 116274844 -4982686 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1472 1989 155 0 18 chr12 116275424 116275752 -4981778 + ORR1A2 LTR MaLR 6 327 0 4 1472 380 269 19 0 chr12 116275917 116276021 -4981509 + RLTR40 LTR ERVK 8 113 -704 4 1472 232 146 68 68 chr12 116276092 116276151 -4981379 - RLTR40 LTR ERVK -756 61 3 4 1472 249 280 138 35 chr12 116278400 116278574 -4978956 - RLTR12B LTR ERVK -302 226 35 4 1472 2031 149 22 14 chr12 116278577 116278943 -4978587 - Lx2 LINE L1 -1 6996 6628 4 1472 1978 125 0 9 chr12 116278941 116279264 -4978266 + L1_Mus4 LINE L1 6314 6633 -3 4 1472 6319 186 19 12 chr12 116279273 116279986 -4977544 - L1_Mur2 LINE L1 -959 4918 4192 4 1472 3368 38 0 0 chr12 116279986 116280382 -4977148 + MTA_Mm LTR MaLR 1 396 0 4 1472 6319 186 19 12 chr12 116280382 116280958 -4976572 - L1_Mur2 LINE L1 -1686 4191 3620 4 1472 1245 133 33 19 chr12 116280963 116281177 -4976353 + RLTR9A LTR ERVK 1 217 -151 4 1472 6461 166 62 22 chr12 116281209 116282517 -4975013 + ETnERV2-int LTR ERVK 2580 3919 -3487 4 1472 462 36 0 0 chr12 116282517 116282573 -4974957 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1472 6461 166 62 22 chr12 116282573 116282645 -4974885 + ETnERV2-int LTR ERVK 3920 4013 -3393 4 1472 4909 141 51 36 chr12 116282658 116282812 -4974718 + RMER16-int LTR ERVK 3070 3235 -2171 4 1472 4349 66 5 16 chr12 116282812 116283382 -4974148 - LTRIS2 LTR ERV1 0 564 1 4 1472 3808 66 21 27 chr12 116283391 116283906 -4973624 + RLTR1B LTR ERV1 1 512 0 4 1472 4909 141 51 36 chr12 116283906 116284657 -4972873 + RMER16-int LTR ERVK 3241 3999 -1407 4 1472 1310 203 25 11 chr12 116284657 116284973 -4972557 + L1MC LINE L1 2693 3010 -3136 4 1472 7764 160 25 11 chr12 116284967 116286552 -4970978 - L1VL4 LINE L1 -1218 2341 737 4 1472 203 0 0 36 chr12 116286552 116286580 -4970950 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1472 2306 233 44 72 chr12 116286580 116286705 -4970825 - L1VL4 LINE L1 -5566 736 611 4 1472 2332 60 34 22 chr12 116286705 116287026 -4970504 - IAPLTR2b LTR ERVK -2 325 1 4 1472 2306 233 44 72 chr12 116287026 116287463 -4970067 - L1VL4 LINE L1 -5692 610 193 4 1472 3940 163 25 30 chr12 116287837 116288584 -4968946 - Lx3B LINE L1 0 6973 6230 4 1472 511 92 11 11 chr12 116289817 116289905 -4967625 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 1472 3194 246 77 8 chr12 116289974 116291042 -4966488 - L1_Mur3 LINE L1 -342 5538 4397 4 1472 2065 270 51 35 chr12 116291415 116292021 -4965509 + RLTR18 LTR ERVK 1 616 0 4 1472 309 51 0 0 chr12 116292099 116292138 -4965392 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1472 269 218 12 25 chr12 116292373 116292453 -4965077 - Lx7 LINE L1 0 7696 7618 4 1472 483 238 9 0 chr12 116292884 116292989 -4964541 + RLTR40 LTR ERVK 9 114 -703 4 1472 219 125 0 0 chr12 116294268 116294308 -4963222 + (ATG)n Simple_repeat Simple_repeat 1 40 0 4 1472 498 70 0 0 chr12 116294558 116294629 -4962901 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1472 851 330 33 5 chr12 116295031 116295427 -4962103 + Lx7 LINE L1 7024 7430 -266 4 1472 1336 226 44 0 chr12 116295585 116295855 -4961675 - Lx3C LINE L1 -4 6972 6691 4 1472 328 144 72 0 chr12 116295856 116295967 -4961563 + (TA)n Simple_repeat Simple_repeat 2 120 0 4 1472 991 143 64 27 chr12 116296083 116296270 -4961260 + B2_Mm2 SINE B2 2 195 0 4 1472 613 220 60 43 chr12 116296633 116296818 -4960712 - RMER13B LTR ERVK -716 192 5 4 1472 3148 172 53 41 chr12 116296981 116297618 -4959912 - Lx2 LINE L1 0 6997 6353 4 1472 671 308 32 42 chr12 116298243 116298460 -4959070 + B3A SINE B2 2 216 0 4 1472 2864 209 47 7 chr12 116299428 116300025 -4957505 + Lx5 LINE L1 6191 6811 -239 4 1472 471 328 22 0 chr12 116300266 116300449 -4957081 + Lx8 LINE L1 6200 6386 -1087 4 1472 1236 266 44 39 chr12 116300456 116300891 -4956639 + Lx7 LINE L1 6971 7407 -289 4 1472 272 83 21 0 chr12 116300912 116300960 -4956570 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1472 1149 120 6 6 chr12 116301403 116301579 -4955951 - B2_Mm2 SINE B2 -18 177 2 4 1472 492 265 45 15 chr12 116303627 116303761 -4953769 + B1_Mm SINE Alu 9 146 -1 4 1472 399 89 0 0 chr12 116304215 116304271 -4953259 + (CATA)n Simple_repeat Simple_repeat 4 59 0 4 1472 1917 325 60 43 chr12 116304286 116305396 -4952134 - Lx7 LINE L1 -279 7417 6290 4 1472 24 0 0 0 chr12 116307893 116307917 -4949613 + AT_rich Low_complexity Low_complexity 1 24 0 4 1472 293 309 21 31 chr12 116308570 116308667 -4948863 + ID_B1 SINE B4 123 218 -6 4 1472 583 86 0 0 chr12 116308589 116308670 -4948860 + B1_Mus2 SINE Alu 64 144 -3 4 1472 721 30 29 44 chr12 116308670 116308807 -4948723 + (TAAA)n Simple_repeat Simple_repeat 2 136 0 4 1472 888 190 50 11 chr12 116309266 116309447 -4948083 - ORR1C2 LTR MaLR -8 376 189 4 1472 262 152 0 21 chr12 116309475 116309522 -4948008 - ORR1C2 LTR MaLR -338 46 1 4 1472 223 325 0 24 chr12 116310365 116310450 -4947080 + CT-rich Low_complexity Low_complexity 4 86 0 4 1472 1889 91 44 0 chr12 116310510 116310785 -4946745 - MTB LTR MaLR -113 287 1 4 1472 5070 58 0 3 chr12 116310930 116311570 -4945960 - L1Md_F2 LINE L1 -12 6570 5933 4 1472 3673 45 0 0 chr12 116311570 116312107 -4945423 + L1Md_F2 LINE L1 5419 5955 -627 4 1472 266 370 56 28 chr12 116312265 116312479 -4945051 + MER67B LTR ERV1 441 660 -1 4 1472 21 89 0 0 chr12 116312672 116312728 -4944802 + AT_rich Low_complexity Low_complexity 1 56 0 4 1472 1105 117 22 11 chr12 116313231 116313413 -4944117 - L1_Mus2 LINE L1 -2 6564 6381 4 1472 263 338 23 104 chr12 116313726 116313947 -4943583 - RLTR25B LTR ERVK -821 207 5 4 1472 6915 93 16 1 chr12 116314150 116315114 -4942416 - L1_Mus2 LINE L1 -1 6565 5588 4 1472 327 96 0 0 chr12 116315533 116315585 -4941945 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1472 23 54 0 0 chr12 116316090 116316127 -4941403 + AT_rich Low_complexity Low_complexity 1 37 0 4 1472 546 143 10 10 chr12 116316256 116316355 -4941175 + MERVL-int LTR ERVL 5262 5360 -125 4 1472 385 167 46 35 chr12 116316355 116316442 -4941088 + ORR1A3-int LTR MaLR 553 640 -1323 4 1472 314 0 0 0 chr12 116316442 116316480 -4941050 + MERVL-int LTR ERVL 5448 5485 0 4 1472 2489 10 0 0 chr12 116316480 116316768 -4940762 + MT2_Mm LTR ERVL 1 288 -205 4 1472 243 379 46 0 chr12 116317499 116317652 -4939878 + MLT1-int LTR MaLR 447 606 -765 5 1472 22 0 0 0 chr12 116318299 116318321 -4939209 + AT_rich Low_complexity Low_complexity 1 22 0 5 1472 2199 270 35 20 chr12 116318743 116319547 -4937983 - L1_Mur2 LINE L1 -340 5537 4722 5 1472 590 231 104 81 chr12 116319547 116319651 -4937879 + RLTR18 LTR ERVK 47 136 -480 5 1472 1344 127 13 34 chr12 116319651 116319798 -4937732 + L1_Mus3 LINE L1 6398 6543 -95 5 1472 4724 131 47 21 chr12 116319798 116320664 -4936866 + RMER17D LTR ERVK 1 889 0 5 1472 1344 127 13 34 chr12 116320664 116320786 -4936744 + L1_Mus3 LINE L1 6544 6638 0 5 1472 590 231 104 81 chr12 116320786 116320901 -4936629 + RLTR18 LTR ERVK 137 271 -345 5 1472 2121 252 57 37 chr12 116322324 116322917 -4934613 + RLTR18 LTR ERVK 4 608 -8 5 1472 357 109 0 0 chr12 116322985 116323040 -4934490 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1472 522 0 0 0 chr12 116323040 116323097 -4934433 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1472 216 200 0 0 chr12 116323097 116323142 -4934388 + (ATAAG)n Simple_repeat Simple_repeat 2 46 0 5 1472 22 35 0 0 chr12 116323326 116323355 -4934175 + AT_rich Low_complexity Low_complexity 1 29 0 5 1472 553 231 108 26 chr12 116323371 116323602 -4933928 - Lx7 LINE L1 0 7696 7447 5 1472 222 136 0 0 chr12 116324164 116324208 -4933322 + (ATG)n Simple_repeat Simple_repeat 1 44 0 5 1472 444 19 0 0 chr12 116324973 116325026 -4932504 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1472 252 146 0 20 chr12 116325321 116325370 -4932160 - Lx8 LINE L1 -654 6819 6772 5 1472 324 302 73 77 chr12 116325474 116325761 -4931769 + L1MB5 LINE L1 5592 5877 -297 5 1472 824 298 34 3 chr12 116325965 116326261 -4931269 + Lx7 LINE L1 7004 7308 -388 5 1472 188 111 28 0 chr12 116326534 116326570 -4930960 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1472 250 364 81 6 chr12 116327046 116327220 -4930310 - Lx8 LINE L1 -154 7319 7133 5 1472 507 333 64 0 chr12 116327410 116327644 -4929886 - Lx8 LINE L1 -329 7144 6896 5 1472 681 284 109 4 chr12 116327678 116327954 -4929576 - Lx8 LINE L1 -640 6833 6529 5 1472 1023 280 19 19 chr12 116328620 116328930 -4928600 + Lx7 LINE L1 7029 7338 -358 5 1472 1421 214 47 0 chr12 116329181 116329457 -4928073 - Lx3C LINE L1 -4 6972 6684 5 1472 28 0 0 0 chr12 116329457 116329485 -4928045 + AT_rich Low_complexity Low_complexity 1 28 0 5 1472 1167 134 0 44 chr12 116329595 116329798 -4927732 + B2_Mm2 SINE B2 2 195 0 5 1472 545 249 60 43 chr12 116330161 116330346 -4927184 - RMER13B LTR ERVK -716 192 5 5 1472 3389 169 3 30 chr12 116330522 116331162 -4926368 - Lx2 LINE L1 -13 6984 6362 5 1472 2687 39 2 150 chr12 116331476 116331929 -4925601 - RLTR10 LTR ERVK -4 386 1 5 1472 8837 16 0 2 chr12 116331931 116332928 -4924602 - RLTR10-int LTR ERVK -3 1984 990 5 1472 292 248 62 39 chr12 116333010 116333140 -4924390 - RLTR10-int LTR ERVK -5987 1594 1462 5 1472 5609 37 0 3 chr12 116333204 116333903 -4923627 - RLTR10-int LTR ERVK -989 998 302 5 1472 693 151 7 41 chr12 116333903 116334048 -4923482 - RLTR10A LTR ERVK 0 411 272 5 1472 1269 43 6 0 chr12 116334048 116334209 -4923321 - RLTR10-int LTR ERVK -7419 162 1 5 1472 2718 39 2 150 chr12 116334215 116334668 -4922862 - RLTR10 LTR ERVK -4 386 1 5 1472 692 306 7 28 chr12 116334995 116335212 -4922318 + B3A SINE B2 2 216 0 5 1472 3452 210 73 5 chr12 116336190 116336995 -4920535 + Lx5 LINE L1 6191 7050 0 5 1472 564 15 0 0 chr12 116337347 116337412 -4920118 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1472 432 0 0 0 chr12 116337412 116337459 -4920071 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1472 462 264 9 36 chr12 116337459 116337557 -4919973 + RLTR20A2 LTR ERVK 479 574 -4 5 1472 2309 188 26 19 chr12 116337557 116338128 -4919402 + L1_Mur2 LINE L1 4725 5299 -578 5 1472 35192 30 2 9 chr12 116338126 116343362 -4914168 + L1Md_T LINE L1 391 5586 -297 5 1472 8339 39 0 0 chr12 116343362 116344357 -4913173 + L1Md_T LINE L1 5587 6581 -1 5 1472 309 329 50 55 chr12 116344409 116344647 -4912883 + L1M5 LINE L1 4403 4639 -1507 5 1472 393 22 0 0 chr12 116344654 116344700 -4912830 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1472 976 103 6 6 chr12 116344707 116344864 -4912666 + (GGAA)n Simple_repeat Simple_repeat 4 160 0 5 1472 2901 121 16 0 chr12 116345514 116345967 -4911563 - L1_Mm LINE L1 -2 5881 5422 5 1472 2920 115 4 13 chr12 116345963 116346440 -4911090 + L1_Mm LINE L1 4965 5437 -446 5 1472 581 154 0 110 chr12 116346438 116346584 -4910946 - L1VL2 LINE L1 -5679 656 527 5 1472 4176 151 10 19 chr12 116347233 116347963 -4909567 - Lx3B LINE L1 0 6973 6251 5 1472 740 193 7 0 chr12 116349496 116349631 -4907899 - B1_Mus2 SINE Alu -1 146 11 5 1472 637 305 5 44 chr12 116349764 116349970 -4907560 - B3 SINE B2 -14 202 5 5 1472 26 0 0 0 chr12 116350059 116350085 -4907445 + AT_rich Low_complexity Low_complexity 1 26 0 5 1472 201 39 0 0 chr12 116350086 116350112 -4907418 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 5 1472 362 367 95 7 chr12 116350114 116350262 -4907268 - RSINE1 SINE B4 0 165 5 5 1472 253 368 32 0 chr12 116350485 116350580 -4906950 + PB1D10 SINE Alu 1 98 -19 5 1472 1567 184 78 10 chr12 116350581 116350889 -4906641 + ORR1A4 LTR MaLR 1 329 0 5 1472 234 91 0 0 chr12 116350901 116350934 -4906596 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 5 1472 192 77 0 0 chr12 116350949 116350975 -4906555 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 5 1472 540 149 11 0 chr12 116351044 116351128 -4906402 + RMER19A LTR ERVK 1 85 -652 5 1472 361 279 36 54 chr12 116351128 116351295 -4906235 - RNLTR23 LTR ERVK 0 642 479 5 1472 2096 181 50 3 chr12 116351585 116352168 -4905362 + RMER19A LTR ERVK 80 737 0 5 1472 233 88 0 0 chr12 116352238 116352272 -4905258 - RMER12B LTR ERVK -183 1221 1188 5 1472 1049 56 20 27 chr12 116353005 116353152 -4904378 - B1_Mm SINE Alu 0 147 2 5 1472 505 135 0 0 chr12 116353180 116353254 -4904276 - B1_Mus2 SINE Alu -13 134 61 5 1472 2861 146 58 2 chr12 116353256 116353738 -4903792 + RMER17B LTR ERVK 1 509 -449 5 1472 504 0 0 0 chr12 116353739 116353795 -4903735 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1472 211 233 17 0 chr12 116353815 116353875 -4903655 + T-rich Low_complexity Low_complexity 2 62 0 5 1472 5388 51 9 1 chr12 116353909 116354580 -4902950 - L1Md_F2 LINE L1 0 6582 5907 5 1472 2862 74 0 0 chr12 116354580 116354972 -4902558 + L1Md_F2 LINE L1 5195 5586 -297 5 1472 6817 95 10 13 chr12 116354973 116355971 -4901559 + L1Md_F2 LINE L1 5588 6582 0 5 1472 934 246 48 50 chr12 116355972 116356346 -4901184 - RMER13B LTR ERVK -531 377 40 5 1472 844 171 146 5 chr12 116356435 116356637 -4900893 + Lx3B LINE L1 6760 7057 -1 5 1472 23 54 0 0 chr12 116356637 116356674 -4900856 + AT_rich Low_complexity Low_complexity 1 37 0 5 1472 389 70 0 17 chr12 116356679 116356737 -4900793 + (CAAAA)n Simple_repeat Simple_repeat 3 59 0 5 1472 216 323 61 15 chr12 116357443 116357509 -4900021 + ID4_ SINE ID 6 74 -9 5 1472 207 0 0 0 chr12 116358905 116358928 -4898602 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5 1472 24 0 0 0 chr12 116359188 116359212 -4898318 + AT_rich Low_complexity Low_complexity 1 24 0 5 1472 217 95 0 45 chr12 116359476 116359520 -4898010 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1472 7996 142 10 1 chr12 116360349 116361762 -4895768 - L1Md_F LINE L1 -2741 3142 1717 5 1472 7431 59 2 1 chr12 116361730 116363209 -4894321 - L1Md_F2 LINE L1 -2 6580 5100 5 1472 1332 65 5 0 chr12 116363189 116363375 -4894155 + L1Md_F2 LINE L1 4953 5139 -744 5 1472 3306 139 2 74 chr12 116363370 116364509 -4893021 - L1Md_F LINE L1 -4116 1767 725 5 1472 335 286 45 8 chr12 116364518 116364652 -4892878 - L1Md_F LINE L1 -5814 802 664 5 1472 443 307 24 96 chr12 116364706 116365172 -4892358 - L1VL1 LINE L1 -6030 392 27 5 1472 331 277 124 9 chr12 116365415 116365528 -4892002 + ID_B1 SINE B4 86 211 -13 5 1472 291 328 33 8 chr12 116365531 116365651 -4891879 + Lx8 LINE L1 6453 6575 -898 5 1472 624 181 35 0 chr12 116365742 116365858 -4891672 - B1_Mus1 SINE Alu -5 143 24 5 1472 271 232 111 83 chr12 116365781 116365889 -4891641 - MT2B LTR ERVL -345 256 146 5 1472 1131 141 16 0 chr12 116366471 116366655 -4890875 - BGLII LTR ERVK -233 188 2 5 1472 2656 231 43 13 chr12 116367465 116368179 -4889351 + RLTR22_Mur LTR ERVK 1 736 -1112 5 1472 1873 231 53 68 chr12 116368232 116368764 -4888766 - Lx5 LINE L1 -782 6268 5718 5 1472 895 126 0 0 chr12 116368764 116368899 -4888631 + B1_Mus2 SINE Alu 2 136 -11 5 1472 288 0 41 41 chr12 116368900 116368949 -4888581 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1472 1873 231 53 68 chr12 116368949 116369106 -4888424 - Lx5 LINE L1 -1333 5717 5587 5 1472 385 316 104 13 chr12 116370697 116370995 -4886535 + Lx8 LINE L1 6817 7141 -332 5 1472 393 272 64 0 chr12 116371786 116371911 -4885619 - Lx8 LINE L1 -564 6909 6777 5 1472 180 0 0 0 chr12 116372152 116372172 -4885358 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1472 581 40 0 13 chr12 116372172 116372248 -4885282 + (TAA)n Simple_repeat Simple_repeat 3 78 0 5 1472 264 121 68 17 chr12 116372250 116372309 -4885221 - Lx8 LINE L1 -1000 6473 6412 5 1472 1370 210 60 53 chr12 116372345 116372676 -4884854 + L1_Mur2 LINE L1 5435 5770 -107 5 1472 1068 141 43 0 chr12 116372676 116372861 -4884669 - B2_Mm2 SINE B2 -1 194 2 5 1472 1370 210 60 53 chr12 116372861 116372927 -4884603 + L1_Mur2 LINE L1 5771 5835 -42 5 1472 2106 192 19 0 chr12 116372922 116373454 -4884076 - L1_Mur2 LINE L1 -5755 957 350 5 1472 3030 216 15 6 chr12 116373455 116374138 -4883392 + Lx4B LINE L1 6226 6914 -144 5 1472 491 0 0 17 chr12 116374142 116374202 -4883328 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 5 1472 362 167 0 15 chr12 116374203 116374270 -4883260 + Lx5 LINE L1 6822 6887 -163 5 1472 332 77 19 0 chr12 116374275 116374327 -4883203 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 5 1472 20406 104 2 4 chr12 116374335 116378216 -4879314 - L1Md_F2 LINE L1 -10 6572 2702 5 1472 7984 84 25 4 chr12 116378220 116379443 -4878087 + L1Md_F2 LINE L1 1463 2710 -3173 5 1472 368 202 194 39 chr12 116379442 116379571 -4877959 + Lx4B LINE L1 6908 7056 -2 5 1472 355 313 70 10 chr12 116379810 116380010 -4877520 + Lx7 LINE L1 5636 5847 -1849 5 1472 21 36 0 0 chr12 116380010 116380038 -4877492 + AT_rich Low_complexity Low_complexity 1 28 0 5 1472 455 340 20 0 chr12 116380469 116380669 -4876861 + Lx8 LINE L1 6200 6403 -1070 5 1472 790 306 43 3 chr12 116380687 116380989 -4876541 + Lx7 LINE L1 6992 7305 -391 5 1472 488 112 25 0 chr12 116381043 116381123 -4876407 + Lx2A1 LINE L1 6751 6832 -176 5 1472 4048 158 4 8 chr12 116381121 116381823 -4875707 - Lx2 LINE L1 -40 6957 6259 5 1472 307 312 35 35 chr12 116382141 116382284 -4875246 + MLT-int LTR MaLR 3 145 -1590 5 1472 305 253 13 0 chr12 116382383 116382458 -4875072 + Lx4A LINE L1 6699 6774 -284 5 1472 1247 210 29 3 chr12 116382541 116382890 -4874640 + L1_Mur2 LINE L1 2992 3349 -2528 5 1472 773 131 81 0 chr12 116383000 116383160 -4874370 + MusHAL1 LINE L1 1039 1211 -1501 5 1472 365 306 0 0 chr12 116383161 116383272 -4874258 + RLTR40 LTR ERVK 25 135 -682 6 1472 2735 247 48 24 chr12 116386601 116386755 -4870775 + RMER13B LTR ERVK 224 371 -537 6 1472 5353 134 9 15 chr12 116386755 116387643 -4869887 + L1_Mus4 LINE L1 5751 6633 -3 6 1472 2735 247 48 24 chr12 116387643 116388157 -4869373 + RMER13B LTR ERVK 372 907 -1 6 1472 435 349 47 43 chr12 116388341 116389041 -4868489 - RMER16-int LTR ERVK -393 5013 4311 6 1472 2464 175 13 2 chr12 116389674 116390132 -4867398 - RMER16-int LTR ERVK -1434 3972 3510 6 1472 432 123 0 0 chr12 116390164 116390229 -4867301 - RMER16-int LTR ERVK -1875 3531 3467 6 1472 1553 201 97 22 chr12 116390229 116390590 -4866940 + Lx4B LINE L1 6668 7055 -3 6 1472 441 307 12 20 chr12 116390662 116390929 -4866601 + Lx7 LINE L1 5475 5743 -548 6 1472 513 0 0 0 chr12 116390929 116390986 -4866544 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1472 519 17 0 0 chr12 116390986 116391045 -4866485 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1472 1003 293 19 29 chr12 116391057 116391373 -4866157 + Lx6 LINE L1 7146 7458 -2 6 1472 245 236 0 18 chr12 116391390 116391446 -4866084 + GA-rich Low_complexity Low_complexity 2 56 0 6 22 6074 63 2 4 chr12 116391451 116392243 -4865287 + L1Md_F2 LINE L1 4796 5586 -297 6 1473 7816 51 7 4 chr12 116392244 116393226 -4864304 + L1Md_F2 LINE L1 5588 6572 -10 6 1473 573 192 23 23 chr12 116393230 116393406 -4864124 + GA-rich Low_complexity Low_complexity 5 180 0 6 1473 401 345 12 0 chr12 116393989 116394154 -4863376 + Lx7 LINE L1 6200 6366 -1107 6 1473 1294 247 65 18 chr12 116394203 116394603 -4862927 + Lx7 LINE L1 6989 7407 -289 6 1473 435 38 0 0 chr12 116394622 116394675 -4862855 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1473 802 330 47 4 chr12 116395170 116395447 -4862083 + Lx2B LINE L1 6695 6983 -17 6 1473 1079 241 20 3 chr12 116395462 116395804 -4861726 + L1_Mur2 LINE L1 2995 3342 -2535 6 1473 933 117 9 1 chr12 116395920 116396082 -4861448 + L1_Rod LINE L1 2267 2427 -3420 6 1473 343 267 0 0 chr12 116396082 116396172 -4861358 + RLTR40 LTR ERVK 26 115 -702 6 1473 180 0 0 0 chr12 116397671 116397691 -4859839 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1473 706 178 8 8 chr12 116399585 116399715 -4857815 + RMER13B LTR ERVK 243 372 -536 6 1473 5337 143 4 2 chr12 116399715 116400548 -4856982 + L1_Mus4 LINE L1 5752 6585 -51 6 1473 311 365 15 11 chr12 116401032 116401301 -4856229 - RMER16-int LTR ERVK -674 4732 4463 6 1473 1630 141 124 0 chr12 116401554 116401845 -4855685 - IAPEY3_LTR LTR ERVK -5 327 1 6 1473 1744 206 32 5 chr12 116402376 116402527 -4855003 - RMER16-int LTR ERVK -1433 3973 3813 6 1473 435 19 0 0 chr12 116402527 116402579 -4854951 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1473 1744 206 32 5 chr12 116402579 116402802 -4854728 - RMER16-int LTR ERVK -1594 3812 3590 6 1473 224 266 25 0 chr12 116402818 116402897 -4854633 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 1473 11137 113 13 5 chr12 116406462 116408912 -4848618 + L1_Mus1 LINE L1 4110 6566 -1 6 1473 229 361 42 85 chr12 116411511 116411723 -4845807 - RLTR25B LTR ERVK -821 207 5 6 1473 276 170 0 0 chr12 116414591 116414644 -4842886 + GA-rich Low_complexity Low_complexity 2 54 0 6 1473 6047 178 15 7 chr12 116414799 116416378 -4841152 - Lx LINE L1 -3 6651 5056 6 1473 467 165 31 0 chr12 116416724 116416821 -4840709 + ORR1A2 LTR MaLR 1 100 -227 6 1473 7686 190 89 16 chr12 116416831 116418536 -4838994 + ORR1A2-int LTR MaLR 1 1835 -128 6 1473 216 0 0 0 chr12 116418536 116418560 -4838970 + (TTA)n Simple_repeat Simple_repeat 1 24 0 6 1473 4543 108 0 0 chr12 116418560 116419206 -4838324 - L1_Mus1 LINE L1 -10 6557 5912 6 1473 7686 190 89 16 chr12 116419206 116419234 -4838296 + ORR1A2-int LTR MaLR 1836 1862 -101 6 1473 21 0 0 0 chr12 116420626 116420647 -4836883 + AT_rich Low_complexity Low_complexity 1 21 0 6 1473 6035 84 1 10 chr12 116420760 116421575 -4835955 + RLTR13C2 LTR ERVK 1 808 0 6 1473 645 269 8 0 chr12 116422066 116422196 -4835334 + B1_Mus2 SINE Alu 9 139 -8 6 1473 371 284 72 32 chr12 116422380 116422755 -4834775 - RLTR12B LTR ERVK -256 272 1 6 1473 3985 123 28 17 chr12 116422951 116423586 -4833944 - L1_Mus3 LINE L1 -77 6561 5920 6 1473 390 105 95 0 chr12 116423554 116423630 -4833900 - L1_Mus3 LINE L1 -527 5657 5587 6 1473 498 33 0 0 chr12 116424050 116424110 -4833420 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1473 711 35 0 0 chr12 116424279 116424365 -4833165 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 6 1473 6999 86 20 10 chr12 116424667 116425644 -4831886 - L1Md_F2 LINE L1 -9 6573 5587 6 1473 279 377 43 54 chr12 116425869 116426127 -4831403 + MLT1D LTR MaLR 84 338 -167 6 1473 24 67 0 0 chr12 116426339 116426384 -4831146 + AT_rich Low_complexity Low_complexity 1 45 0 6 1473 253 333 66 7 chr12 116426536 116426687 -4830843 + MLT1D-int LTR MaLR 447 606 -765 6 1473 2131 283 31 19 chr12 116427801 116428607 -4828923 - L1_Mur2 LINE L1 -340 5537 4722 6 1473 1823 248 75 59 chr12 116428607 116429164 -4828366 + RLTR18 LTR ERVK 47 612 -4 6 1473 21 57 0 0 chr12 116429420 116429455 -4828075 + AT_rich Low_complexity Low_complexity 1 35 0 6 1473 297 264 0 11 chr12 116429464 116429552 -4827978 - Lx7 LINE L1 -2 7694 7608 6 1473 219 134 41 82 chr12 116429642 116429715 -4827815 + (CAGAGA)n Simple_repeat Simple_repeat 6 75 0 6 1473 5526 120 36 3 chr12 116430065 116430934 -4826596 + Lx3_Mus LINE L1 6105 7001 -8 6 1473 373 295 40 13 chr12 116431349 116431500 -4826030 + RLTR40 LTR ERVK 9 163 -654 6 1473 502 213 26 32 chr12 116432676 116432831 -4824699 - HAL1-2a_MD LINE L1 -534 2490 2337 6 1473 1095 275 93 28 chr12 116433797 116434261 -4823269 - Lx8 LINE L1 -324 7149 6656 6 1473 1114 298 20 25 chr12 116434750 116435156 -4822374 + Lx7 LINE L1 6992 7395 -301 6 1473 753 12 0 0 chr12 116435259 116435345 -4822185 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 6 1473 471 35 0 0 chr12 116435345 116435402 -4822128 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1473 18428 25 1 1 chr12 116436255 116438450 -4819080 - L1_Mm LINE L1 -755 5128 2936 6 1473 263 282 13 0 chr12 116438523 116438601 -4818929 + Lx8 LINE L1 7062 7140 -333 6 1473 324 331 42 68 chr12 116438800 116438991 -4818539 + Lx8 LINE L1 7136 7321 -152 6 1473 222 105 0 0 chr12 116439003 116439041 -4818489 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1473 1025 101 0 13 chr12 116439041 116439191 -4818339 - B1_Mus1 SINE Alu 0 148 1 6 1473 24 67 0 0 chr12 116439553 116439598 -4817932 + AT_rich Low_complexity Low_complexity 1 45 0 6 1473 503 326 260 2 chr12 116439621 116440035 -4817495 - Lx8 LINE L1 -534 6939 6420 6 1473 1323 268 48 2 chr12 116440073 116440470 -4817060 + L1_Mur2 LINE L1 5430 5844 -33 6 1473 2693 209 41 2 chr12 116440455 116441036 -4816494 - L1_Mur2 LINE L1 -5755 957 354 6 1473 3833 205 47 14 chr12 116441007 116441839 -4815691 + Lx4B LINE L1 6191 7049 -9 6 1473 635 313 46 26 chr12 116441895 116442047 -4815483 + L1_Mur1 LINE L1 5452 5604 -693 6 1473 261 0 0 0 chr12 116442047 116442076 -4815454 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1473 635 324 41 30 chr12 116442076 116442309 -4815221 + L1_Mur1 LINE L1 5577 5809 -488 6 1473 293 244 12 0 chr12 116442410 116442492 -4815038 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 1473 846 279 25 56 chr12 116442497 116442816 -4814714 + Lx6 LINE L1 7138 7446 -14 6 1473 619 131 11 62 chr12 116442878 116443057 -4814473 + GA-rich Low_complexity Low_complexity 5 174 0 6 1473 421 357 25 0 chr12 116443644 116443840 -4813690 + Lx8 LINE L1 6200 6400 -1073 6 1473 1347 234 62 27 chr12 116443858 116444263 -4813267 + Lx7 LINE L1 6989 7407 -289 6 1473 498 33 0 0 chr12 116444271 116444331 -4813199 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1473 858 316 51 4 chr12 116444865 116445141 -4812389 + Lx2B LINE L1 6695 6983 -17 6 1473 1040 249 17 14 chr12 116445154 116445509 -4812021 + L1_Mur2 LINE L1 2992 3347 -2530 6 1473 867 134 3 0 chr12 116445616 116445782 -4811748 + L1_Mur1 LINE L1 2250 2420 -3466 6 1473 255 274 0 67 chr12 116445782 116445872 -4811658 + RLTR40 LTR ERVK 26 109 -708 6 1473 706 178 8 8 chr12 116449265 116449395 -4808135 + RMER13B LTR ERVK 243 372 -536 6 1473 5242 153 4 2 chr12 116449395 116450235 -4807295 + L1_Mus4 LINE L1 5752 6592 -44 6 1473 357 376 25 19 chr12 116450460 116450980 -4806550 - RMER16-int LTR ERVK -421 4985 4463 6 1473 1600 144 124 0 chr12 116451233 116451524 -4806006 - IAPEY3_LTR LTR ERVK -5 327 1 6 1473 2375 192 25 52 chr12 116452055 116452576 -4804954 - RMER16-int LTR ERVK -1433 3973 3467 6 1473 1438 214 75 24 chr12 116452576 116452907 -4804623 + Lx4B LINE L1 6668 7015 -43 6 1473 22 56 0 0 chr12 116452913 116452949 -4804581 + AT_rich Low_complexity Low_complexity 1 36 0 6 1473 554 333 28 27 chr12 116453004 116453354 -4804176 + Lx8 LINE L1 5446 5803 -80 6 1473 1037 301 7 10 chr12 116453533 116453828 -4803702 + Lx6 LINE L1 7162 7455 -5 6 1473 659 191 0 12 chr12 116453849 116454093 -4803437 + GA-rich Low_complexity Low_complexity 1 240 0 6 1473 332 323 89 13 chr12 116454522 116454679 -4802851 + L1MC4a LINE L1 7663 7831 -51 6 1473 445 333 7 0 chr12 116454704 116454854 -4802676 + Lx8 LINE L1 6214 6364 -1109 6 1473 1426 239 20 3 chr12 116454907 116455251 -4802279 + Lx7 LINE L1 6990 7339 -357 6 1473 291 122 0 0 chr12 116455319 116455368 -4802162 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1473 1035 159 0 6 chr12 116455829 116456006 -4801524 - B2_Mm2 SINE B2 -18 177 2 6 1473 7182 26 0 1 chr12 116456734 116457582 -4799948 + L1Md_A LINE L1 4740 5586 -297 6 1473 8368 32 1 0 chr12 116457583 116458574 -4798956 + L1Md_A LINE L1 5588 6579 -3 6 1473 7027 99 11 19 chr12 116458574 116459855 -4797675 + L1_Mus1 LINE L1 5294 6567 0 6 1473 31 44 0 0 chr12 116460412 116460457 -4797073 + AT_rich Low_complexity Low_complexity 1 45 0 6 1473 240 250 48 107 chr12 116462559 116462662 -4794868 - RLTR25A LTR ERVK -1002 101 5 6 1473 6403 162 14 9 chr12 116463822 116465409 -4792121 - Lx LINE L1 -5 6649 5056 6 1473 454 198 10 0 chr12 116465757 116465853 -4791677 + ORR1A2 LTR MaLR 1 97 -230 6 1473 6902 199 79 21 chr12 116465859 116467566 -4789964 + ORR1A2-int LTR MaLR 5 1829 -134 6 1473 279 0 0 0 chr12 116467566 116467597 -4789933 + (TTC)n Simple_repeat Simple_repeat 1 31 0 6 1473 477 0 0 0 chr12 116467597 116467650 -4789880 + (TTA)n Simple_repeat Simple_repeat 2 54 0 6 1473 4671 93 2 0 chr12 116467677 116468313 -4789217 - L1_Mus1 LINE L1 -19 6548 5912 6 1473 441 0 0 0 chr12 116469450 116469499 -4788031 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1473 281 62 15 59 chr12 116469755 116469823 -4787707 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 6 1473 29 60 0 0 chr12 116470818 116470868 -4786662 + AT_rich Low_complexity Low_complexity 1 50 0 6 1473 34134 74 12 5 chr12 116471049 116477268 -4780262 - L1Md_F2 LINE L1 -2 6580 313 7 1473 285 318 15 58 chr12 116477310 116477447 -4780083 + MLT1F-int LTR MaLR 367 497 -992 7 1473 1182 99 175 0 chr12 116478020 116478231 -4779299 - L1_Mus1 LINE L1 0 6567 6320 7 1473 6736 107 9 1 chr12 116478232 116479882 -4777648 + L1_Mus1 LINE L1 4973 6567 0 7 1473 322 253 0 11 chr12 116480162 116480250 -4777280 - Lx7 LINE L1 -2 7694 7608 7 1473 284 250 0 0 chr12 116480341 116480413 -4777117 + GA-rich Low_complexity Low_complexity 2 73 0 7 1473 232 256 0 25 chr12 116480648 116480728 -4776802 - Lx7 LINE L1 0 7696 7619 7 1473 516 96 21 6 chr12 116480770 116480860 -4776670 + L1Md_F2 LINE L1 6139 6207 -431 7 1473 335 85 0 33 chr12 116481839 116481900 -4775630 + (GGA)n Simple_repeat Simple_repeat 2 60 0 7 1473 576 111 0 0 chr12 116482144 116482234 -4775296 + (TA)n Simple_repeat Simple_repeat 2 91 0 7 1473 207 0 0 0 chr12 116482234 116482256 -4775274 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1473 291 379 55 8 chr12 116483016 116483269 -4774261 - Lx8 LINE L1 -74 7399 7135 7 1473 851 298 75 21 chr12 116483428 116483812 -4773718 - Lx8 LINE L1 -315 7158 6754 7 1473 23 0 0 0 chr12 116483898 116483921 -4773609 + AT_rich Low_complexity Low_complexity 1 23 0 7 1473 1408 301 82 9 chr12 116484288 116484924 -4772606 + Lx7 LINE L1 6992 7673 -23 7 1473 207 88 0 0 chr12 116485066 116485100 -4772430 + (CAA)n Simple_repeat Simple_repeat 2 35 0 7 1473 1364 86 0 5 chr12 116485257 116485445 -4772085 + B2_Mm2 SINE B2 3 189 -6 7 1473 235 125 0 0 chr12 116485445 116485511 -4772019 + L1_Mus1 LINE L1 6518 6567 0 7 1473 522 43 0 0 chr12 116486469 116486538 -4770992 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1473 24 32 0 0 chr12 116486659 116486690 -4770840 + AT_rich Low_complexity Low_complexity 1 31 0 7 1473 777 289 118 0 chr12 116486991 116487323 -4770207 - Lx8 LINE L1 -540 6933 6563 7 1473 194 0 0 37 chr12 116487384 116487411 -4770119 + (CAAAAA)n Simple_repeat Simple_repeat 6 31 0 7 1473 1647 213 52 8 chr12 116487505 116487889 -4769641 + L1_Mur2 LINE L1 5430 5830 -47 7 1473 2676 193 39 0 chr12 116487892 116488463 -4769067 - L1_Mur2 LINE L1 -5758 954 362 7 1473 2545 174 19 4 chr12 116488476 116488939 -4768591 + Lx4B LINE L1 6226 6695 -363 7 1473 911 201 0 16 chr12 116488937 116489119 -4768411 - Lx4B LINE L1 -342 6716 6538 7 1473 1045 188 16 0 chr12 116489210 116489396 -4768134 + Lx5 LINE L1 6333 6521 -529 7 1473 1004 150 0 6 chr12 116491796 116491957 -4765573 + B2_Mm2 SINE B2 2 161 -34 7 1473 1065 41 20 0 chr12 116491957 116492104 -4765426 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 7 1473 1567 272 41 7 chr12 116492563 116493004 -4764526 - Lx7 LINE L1 -249 7447 6992 7 1473 384 296 106 0 chr12 116493063 116493195 -4764335 - Lx8 LINE L1 -1114 6359 6214 7 1473 324 301 67 27 chr12 116493221 116493371 -4764159 - L1MC4a LINE L1 -50 7832 7677 7 1473 573 120 0 0 chr12 116493808 116493900 -4763630 + (TTG)n Simple_repeat Simple_repeat 2 93 0 7 1473 985 131 0 17 chr12 116493901 116494079 -4763451 + (TTCTCC)n Simple_repeat Simple_repeat 6 180 0 7 1473 375 67 26 26 chr12 116494139 116494216 -4763314 + (TTTTTG)n Simple_repeat Simple_repeat 1 77 0 7 1473 707 301 20 54 chr12 116494217 116494515 -4763015 - Lx6 LINE L1 -35 7425 7138 7 1473 246 250 13 13 chr12 116494520 116494597 -4762933 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 7 1473 548 313 21 42 chr12 116494701 116495000 -4762530 - Lx6 LINE L1 -1660 5800 5479 7 1473 2054 328 59 11 chr12 116495096 116495566 -4761964 - Lx7 LINE L1 -524 7172 6662 7 1473 255 79 0 0 chr12 116495566 116495604 -4761926 + (CCCTAA)n Simple_repeat Simple_repeat 5 42 0 7 1473 2054 328 59 11 chr12 116495604 116495975 -4761555 - Lx7 LINE L1 -1035 6661 6290 7 1473 2609 108 32 0 chr12 116496664 116497035 -4760495 + IAPEY_LTR LTR ERVK 3 385 0 7 1473 964 120 0 0 chr12 116499423 116499565 -4757965 + B1_Mus1 SINE Alu 2 143 -5 7 1473 261 75 0 0 chr12 116499622 116499662 -4757868 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 7 1473 377 51 0 33 chr12 116499668 116499729 -4757801 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 1473 1048 97 0 0 chr12 116499730 116499875 -4757655 - B1_Mus2 SINE Alu 0 147 3 7 1473 225 0 0 0 chr12 116501974 116501999 -4755531 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1473 257 320 65 110 chr12 116502357 116502557 -4754973 - RLTR25A LTR ERVK -905 198 8 2 1473 695 95 0 0 chr12 116502652 116502757 -4754773 + L1_Mm LINE L1 3768 3872 -2011 3 1473 1281 100 5 0 chr12 116502769 116502969 -4754561 - L1_Mm LINE L1 -515 5368 5168 4 1473 3579 210 3 0 chr12 116502968 116503740 -4753790 - L1_Mm LINE L1 -54 5829 5056 5 1473 514 196 0 0 chr12 116504067 116504164 -4753366 + ORR1A2 LTR MaLR 1 97 -230 6 1473 2802 214 171 22 chr12 116504165 116505014 -4752516 + ORR1A2-int LTR MaLR 1 975 -988 6 1473 3224 209 44 21 chr12 116505022 116505834 -4751696 + ORR1A2-int LTR MaLR 1281 1939 -24 6 1473 2892 96 2 2 chr12 116506134 116506530 -4751000 - MTA_Mm LTR MaLR 0 396 1 7 1473 378 0 0 0 chr12 116507654 116507696 -4749834 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 1473 1121 56 7 7 chr12 116507751 116507895 -4749635 + B1_Mm SINE Alu 2 145 -2 9 1473 3412 41 0 128 chr12 116507902 116508402 -4749128 - RLTR10C LTR ERVK 0 436 1 1 1473 7710 36 0 0 chr12 116508402 116509338 -4748192 - MMERVK10C-int LTR ERVK 0 7581 6646 1 1473 39465 45 0 1 chr12 116509324 116514266 -4743264 - MMERVK10C-int LTR ERVK -1771 5810 870 1 1473 1336 96 38 5 chr12 116514264 116514566 -4742964 - MMERVK10C-int LTR ERVK -7182 399 1 1 1473 3651 46 5 0 chr12 116514566 116515000 -4742530 - RLTR10C LTR ERVK 0 436 1 1 1473 665 259 8 0 chr12 116517158 116517289 -4740241 + B1_Mus2 SINE Alu 9 140 -7 1 1473 370 314 72 41 chr12 116517470 116517847 -4739683 - RLTR15 LTR ERVK -265 263 5 1 1473 3940 118 17 5 chr12 116518049 116518685 -4738845 - L1_Mus3 LINE L1 -75 6563 5920 1 1473 242 139 0 0 chr12 116518672 116518715 -4738815 - L1_Mus3 LINE L1 -938 5629 5587 1 1473 239 394 43 54 chr12 116519906 116520164 -4737366 + MLT1D LTR MaLR 84 338 -167 1 1473 314 246 27 14 chr12 116520386 116520460 -4737070 - RSINE1 SINE B4 -36 129 55 1 1473 2890 80 27 0 chr12 116521420 116521795 -4735735 + IAPEY_LTR LTR ERVK 1 385 0 1 1473 1992 107 0 13 chr12 116521795 116522109 -4735421 + IAPEy-int LTR ERVK 1 310 -7203 1 184 3281 147 13 14 chr12 116522501 116523128 -4734402 + IAPEy-int LTR ERVK 433 1058 -6455 1 1474 19782 67 4 6 chr12 116523128 116525843 -4731687 + IAPEy-int LTR ERVK 4804 7513 0 1 1474 2560 64 12 0 chr12 116525843 116526170 -4731360 + IAPEY_LTR LTR ERVK 55 385 0 1 1474 1914 289 25 15 chr12 116526783 116527592 -4729938 - L1_Mur2 LINE L1 -340 5537 4721 1 1474 1850 251 71 50 chr12 116527593 116528131 -4729399 + RLTR18 LTR ERVK 68 616 0 1 1474 254 167 0 18 chr12 116528438 116528493 -4729037 - Lx7 LINE L1 -2 7694 7641 2 1474 233 102 0 39 chr12 116528626 116528677 -4728853 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 2 1474 23 0 0 0 chr12 116529021 116529044 -4728486 + AT_rich Low_complexity Low_complexity 1 23 0 2 1474 5624 115 28 16 chr12 116529053 116529938 -4727592 + Lx3_Mus LINE L1 6105 7000 -9 2 1474 3079 64 2 42 chr12 116529956 116530414 -4727116 + L1Md_F2 LINE L1 5146 5585 -298 2 1474 7893 54 2 0 chr12 116530415 116531394 -4726136 + L1Md_F2 LINE L1 5587 6567 -15 2 1474 1229 317 11 24 chr12 116531423 116531508 -4726022 - Lx7 LINE L1 -963 6733 6654 2 1474 210 37 0 0 chr12 116531508 116531535 -4725995 + (CCCTAA)n Simple_repeat Simple_repeat 4 30 0 2 1474 1229 317 11 24 chr12 116531535 116531899 -4725631 - Lx7 LINE L1 -1043 6653 6290 2 1474 24 0 0 0 chr12 116534397 116534421 -4723109 + AT_rich Low_complexity Low_complexity 1 24 0 2 1474 630 83 0 0 chr12 116535093 116535177 -4722353 + B1_Mus2 SINE Alu 64 147 0 2 1474 526 76 28 28 chr12 116535177 116535285 -4722245 + (TAAA)n Simple_repeat Simple_repeat 1 108 0 2 1474 898 190 50 11 chr12 116535740 116535921 -4721609 - ORR1C2 LTR MaLR -8 376 189 3 1474 244 174 0 21 chr12 116535949 116535996 -4721534 - ORR1C2 LTR MaLR -338 46 1 3 1474 223 325 0 24 chr12 116536839 116536924 -4720606 + CT-rich Low_complexity Low_complexity 4 86 0 3 1474 1867 94 43 4 chr12 116536984 116537260 -4720270 - MTB LTR MaLR -113 287 1 3 1474 4877 64 19 3 chr12 116537402 116538030 -4719500 - L1Md_F2 LINE L1 -12 6570 5933 3 1474 3481 52 0 0 chr12 116538030 116538567 -4718963 + L1Md_F2 LINE L1 5419 5955 -627 3 1474 290 351 70 42 chr12 116538725 116538939 -4718591 + MER67B LTR ERV1 441 660 -1 3 1474 1055 133 22 11 chr12 116539692 116539874 -4717656 - L1_Mus2 LINE L1 -2 6564 6381 3 1474 6469 95 19 1 chr12 116540595 116541556 -4715974 - L1_Mus2 LINE L1 -1 6565 5588 3 1474 621 40 0 0 chr12 116541975 116542051 -4715479 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1474 24 53 0 0 chr12 116542553 116542591 -4714939 + AT_rich Low_complexity Low_complexity 1 38 0 3 1474 233 375 53 0 chr12 116543465 116543617 -4713913 + MLT1-int LTR MaLR 447 606 -765 3 1474 24 0 0 0 chr12 116544261 116544285 -4713245 + AT_rich Low_complexity Low_complexity 1 24 0 4 1474 1939 272 35 20 chr12 116544707 116545511 -4712019 - L1_Mur2 LINE L1 -340 5537 4722 4 1474 646 222 104 81 chr12 116545511 116545615 -4711915 + RLTR18 LTR ERVK 47 136 -480 4 1474 1352 127 13 34 chr12 116545615 116545762 -4711768 + L1_Mus3 LINE L1 6398 6542 -96 4 1474 2976 186 78 64 chr12 116545762 116546080 -4711450 + RMER17D2 LTR ERVK 1 353 -456 4 1474 809 26 35 0 chr12 116546080 116546196 -4711334 + (TC)n Simple_repeat Simple_repeat 2 121 0 4 1474 2976 186 78 64 chr12 116546196 116546675 -4710855 + RMER17D2 LTR ERVK 354 809 0 4 1474 1352 127 13 34 chr12 116546675 116546797 -4710733 + L1_Mus3 LINE L1 6543 6638 0 4 1474 646 222 104 81 chr12 116546797 116546912 -4710618 + RLTR18 LTR ERVK 137 271 -345 4 1474 22 56 0 0 chr12 116547273 116547309 -4710221 + AT_rich Low_complexity Low_complexity 1 36 0 4 1474 2162 249 59 40 chr12 116548335 116548929 -4708601 + RLTR18 LTR ERVK 4 608 -8 4 1474 288 0 0 0 chr12 116549027 116549059 -4708471 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1474 22 35 0 0 chr12 116549298 116549327 -4708203 + AT_rich Low_complexity Low_complexity 1 29 0 4 1474 454 229 80 20 chr12 116549333 116549575 -4707955 - Lx7 LINE L1 0 7696 7367 5 1474 383 235 39 10 chr12 116549870 116549973 -4707557 + RLTR40 LTR ERVK 9 114 -703 5 1474 285 182 0 0 chr12 116551981 116552036 -4705494 + (TATG)n Simple_repeat Simple_repeat 2 56 0 5 1474 890 42 8 0 chr12 116552105 116552223 -4705307 - L1Md_F2 LINE L1 -1349 4534 4416 5 1474 7773 65 0 3 chr12 116552213 116553259 -4704271 + L1Md_F2 LINE L1 4544 5586 -297 5 1474 7976 56 2 0 chr12 116553259 116554253 -4703277 + L1Md_F2 LINE L1 5587 6582 0 5 1474 326 302 86 61 chr12 116554650 116554929 -4702601 + L1MB5 LINE L1 5592 5877 -297 5 1474 748 279 51 14 chr12 116555133 116555427 -4702103 + Lx7 LINE L1 7004 7308 -388 5 1474 264 355 83 9 chr12 116556152 116556382 -4701148 - Lx8 LINE L1 -94 7379 7133 5 1474 453 336 63 4 chr12 116556575 116556829 -4700701 - Lx8 LINE L1 -332 7141 6873 5 1474 635 248 119 4 chr12 116556840 116557083 -4700447 - Lx8 LINE L1 -640 6833 6563 5 1474 822 291 39 26 chr12 116557781 116558092 -4699438 + Lx7 LINE L1 7024 7338 -358 5 1474 1255 223 48 0 chr12 116558340 116558609 -4698921 - Lx3C LINE L1 -4 6972 6691 5 1474 369 0 0 0 chr12 116558615 116558656 -4698874 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1474 1159 134 0 44 chr12 116558772 116558975 -4698555 + B2_Mm2 SINE B2 2 195 0 6 1474 642 215 60 43 chr12 116559338 116559523 -4698007 - RMER13B LTR ERVK -716 192 5 6 1474 3600 162 3 28 chr12 116559703 116560355 -4697175 - Lx2 LINE L1 0 6997 6362 6 1474 656 320 8 28 chr12 116560989 116561205 -4696325 + B3A SINE B2 3 216 0 6 1474 3486 217 60 7 chr12 116562189 116563006 -4694524 + Lx5 LINE L1 6191 7050 0 6 1474 402 79 0 0 chr12 116563360 116563423 -4694107 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 1474 594 28 0 0 chr12 116563424 116563496 -4694034 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1474 416 250 12 23 chr12 116563497 116563583 -4693947 + RLTR20A2 LTR ERVK 491 575 -3 6 1474 2707 208 21 3 chr12 116563590 116564240 -4693290 + L1_Mur2 LINE L1 4638 5299 -578 6 1474 2044 44 30 0 chr12 116564235 116564506 -4693024 - L1_Mus2 LINE L1 -676 5890 5612 6 1474 1864 140 0 3 chr12 116564504 116564827 -4692703 + L1_Mm LINE L1 5116 5437 -446 7 1474 581 154 0 110 chr12 116564825 116564971 -4692559 - L1VL2 LINE L1 -5679 656 527 7 1474 4061 157 7 25 chr12 116565620 116566356 -4691174 - Lx3B LINE L1 0 6973 6251 7 1474 216 0 0 0 chr12 116567056 116567080 -4690450 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1474 809 168 0 21 chr12 116567871 116568011 -4689519 - B1_Mus2 SINE Alu 0 147 11 7 1474 503 314 9 47 chr12 116568134 116568348 -4689182 - B3 SINE B2 -6 210 5 7 1474 26 0 0 0 chr12 116568437 116568463 -4689067 + AT_rich Low_complexity Low_complexity 1 26 0 7 1474 201 39 0 0 chr12 116568464 116568490 -4689040 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 7 1474 378 345 87 13 chr12 116568492 116568642 -4688888 - RSINE1 SINE B4 0 165 5 7 1474 921 19 0 0 chr12 116568901 116569008 -4688522 + (TC)n Simple_repeat Simple_repeat 1 107 0 7 1474 231 386 0 0 chr12 116569038 116569126 -4688404 + PB1D10 SINE Alu 1 88 -29 8 1474 1704 183 65 0 chr12 116569133 116569439 -4688091 + ORR1A3 LTR MaLR 1 326 0 8 1474 198 103 0 0 chr12 116569451 116569480 -4688050 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 8 1474 201 121 0 0 chr12 116569488 116569521 -4688009 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 8 1474 533 149 11 0 chr12 116569590 116569674 -4687856 + RMER19A LTR ERVK 1 85 -652 8 1474 327 297 36 54 chr12 116569674 116569841 -4687689 - RNLTR23 LTR ERVK 0 642 479 8 1474 2059 182 54 3 chr12 116570131 116570712 -4686818 + RMER19A LTR ERVK 80 737 0 8 1474 240 35 0 0 chr12 116570782 116570811 -4686719 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1474 230 312 138 0 chr12 116571250 116571359 -4686171 - MLT2B3 LTR ERVL -430 124 1 8 1474 1165 68 7 0 chr12 116571559 116571705 -4685825 - B1_Mus1 SINE Alu 0 148 2 8 1474 437 141 0 0 chr12 116571728 116571792 -4685738 - B1_Mus2 SINE Alu -23 124 61 8 1474 2753 135 87 2 chr12 116571794 116572263 -4685267 + RMER17B LTR ERVK 1 509 -449 9 1474 537 16 0 0 chr12 116572264 116572326 -4685204 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 1474 238 308 61 15 chr12 116572786 116572852 -4684678 + ID4_ SINE ID 6 74 -9 9 1474 23 0 0 0 chr12 116574514 116574537 -4682993 + AT_rich Low_complexity Low_complexity 1 23 0 9 1474 23 33 0 0 chr12 116574800 116574830 -4682700 + AT_rich Low_complexity Low_complexity 1 30 0 9 1474 11373 140 5 32 chr12 116575643 116578147 -4679383 - L1Md_F LINE L1 -2741 3142 725 9 1474 341 275 53 8 chr12 116578157 116578289 -4679241 - L1Md_F LINE L1 -5815 801 664 9 1474 344 280 12 14 chr12 116578342 116578529 -4679001 - L1VL1 LINE L1 -6030 392 87 9 1474 266 336 29 0 chr12 116578698 116578802 -4678728 + Lx8 LINE L1 6469 6575 -898 9 1474 653 168 40 0 chr12 116578894 116579019 -4678511 - B1_Mus1 SINE Alu -5 143 14 9 1474 1154 135 11 5 chr12 116579619 116579805 -4677725 - BGLII LTR ERVK -233 188 2 9 1474 2583 233 45 13 chr12 116580626 116581339 -4676191 + RLTR22_Mur LTR ERVK 1 736 -1112 1 1474 1761 220 50 119 chr12 116581392 116581924 -4675606 - Lx5 LINE L1 -782 6268 5718 1 1474 946 117 7 0 chr12 116581924 116582069 -4675461 + B1_Mus2 SINE Alu 2 147 0 1 1474 1761 220 50 119 chr12 116582069 116582268 -4675262 - Lx5 LINE L1 -1333 5717 5587 1 1474 413 306 104 13 chr12 116583865 116584163 -4673367 + Lx8 LINE L1 6817 7141 -332 9 1474 430 264 64 0 chr12 116584954 116585079 -4672451 - Lx8 LINE L1 -564 6909 6777 1 1474 382 316 77 44 chr12 116585119 116585355 -4672175 - Lx8 LINE L1 -754 6719 6474 1 1474 504 0 0 0 chr12 116585355 116585411 -4672119 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1 1474 382 316 77 44 chr12 116585411 116585472 -4672058 - Lx8 LINE L1 -1000 6473 6412 1 1474 1156 230 74 6 chr12 116585508 116585819 -4671711 + Lx4B LINE L1 5435 5766 -111 1 1474 1059 148 39 0 chr12 116585839 116586021 -4671509 - B2_Mm2 SINE B2 -1 194 6 1 1474 321 194 0 0 chr12 116586024 116586091 -4671439 + Lx4B LINE L1 5775 5841 -1217 1 1474 2095 192 19 0 chr12 116586090 116586618 -4670912 - L1_Mur2 LINE L1 -5759 953 350 1 1474 3088 212 15 4 chr12 116586619 116587301 -4670229 + Lx4B LINE L1 6226 6914 -144 1 1474 604 24 23 12 chr12 116587305 116587391 -4670139 + (TTTA)n Simple_repeat Simple_repeat 2 88 0 1 1474 6533 94 8 7 chr12 116587391 116587678 -4669852 - L1Md_F2 LINE L1 -30 6552 6264 1 1474 4472 10 0 0 chr12 116587678 116588171 -4669359 - MT2_Mm LTR ERVL 0 493 1 1 1474 20464 106 2 5 chr12 116588171 116591745 -4665785 - L1Md_F2 LINE L1 -319 6263 2702 1 1474 7777 91 26 3 chr12 116591749 116592969 -4664561 + L1Md_F2 LINE L1 1463 2710 -3173 1 1474 352 202 194 39 chr12 116592968 116593097 -4664433 + Lx4B LINE L1 6908 7056 -2 1 1474 474 314 55 16 chr12 116593195 116593543 -4663987 + Lx7 LINE L1 5516 5878 -290 1 1474 483 18 0 0 chr12 116593543 116593599 -4663931 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1474 439 345 20 0 chr12 116594040 116594240 -4663290 + Lx8 LINE L1 6200 6403 -1070 1 1474 790 306 43 3 chr12 116594258 116594560 -4662970 + Lx7 LINE L1 6992 7305 -391 1 1474 488 112 25 0 chr12 116594614 116594694 -4662836 + Lx2A1 LINE L1 6751 6832 -176 1 1474 4034 158 4 8 chr12 116594692 116595394 -4662136 - Lx2 LINE L1 -40 6957 6259 1 1474 296 319 35 35 chr12 116595711 116595854 -4661676 + MLT-int LTR MaLR 3 145 -1590 1 1474 305 253 13 0 chr12 116595952 116596027 -4661503 + Lx4A LINE L1 6699 6774 -284 1 1474 233 321 0 12 chr12 116596094 116596179 -4661351 + Lx2B LINE L1 6893 6976 -24 1 1474 1235 213 29 3 chr12 116596193 116596542 -4660988 + L1_Mur2 LINE L1 2992 3349 -2528 1 1474 746 143 81 0 chr12 116596651 116596812 -4660718 + MusHAL1 LINE L1 1038 1211 -1501 1 1474 347 275 0 0 chr12 116596813 116596904 -4660626 + RLTR40 LTR ERVK 25 115 -702 1 1474 27 62 0 0 chr12 116598333 116598381 -4659149 + AT_rich Low_complexity Low_complexity 1 48 0 1 1474 205 255 32 11 chr12 116599320 116599415 -4658115 + (TA)n Simple_repeat Simple_repeat 2 98 0 1 1474 2711 248 46 19 chr12 116600281 116600410 -4657120 + RMER13B LTR ERVK 243 371 -537 1 1474 5352 135 8 14 chr12 116600410 116601294 -4656236 + L1_Mus4 LINE L1 5751 6629 -7 1 1474 2711 248 46 19 chr12 116601294 116601812 -4655718 + RMER13B LTR ERVK 372 908 0 1 1474 289 342 49 40 chr12 116601996 116602693 -4654837 - RMER16-int LTR ERVK -393 5013 4311 1 1474 2393 168 13 2 chr12 116603323 116603782 -4653748 - RMER16-int LTR ERVK -1433 3973 3510 1 1474 409 123 0 0 chr12 116603814 116603879 -4653651 - RMER16-int LTR ERVK -1875 3531 3467 1 1474 1420 199 97 22 chr12 116603880 116604240 -4653290 + Lx4B LINE L1 6669 7055 -3 1 1474 414 331 7 11 chr12 116604285 116604579 -4652951 + Lx7 LINE L1 5429 5746 -551 1 1474 933 306 3 25 chr12 116604617 116604935 -4652595 + Lx6 LINE L1 7146 7456 -4 1 1474 8033 55 6 2 chr12 116604998 116606788 -4650742 + L1Md_F2 LINE L1 4778 6572 -10 1 1474 722 193 5 0 chr12 116606792 116606999 -4650531 + GA-rich Low_complexity Low_complexity 1 207 0 1 1474 327 336 8 0 chr12 116607582 116607716 -4649814 + Lx7 LINE L1 6200 6334 -1139 1 1474 1122 243 50 11 chr12 116607796 116608154 -4649376 + Lx7 LINE L1 6989 7360 -336 1 1474 408 40 0 0 chr12 116608212 116608262 -4649268 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1474 771 316 51 4 chr12 116608759 116609035 -4648495 + Lx2B LINE L1 6695 6983 -17 1 1474 1025 243 17 14 chr12 116609047 116609402 -4648128 + L1_Mur2 LINE L1 2992 3347 -2530 1 1474 857 124 9 1 chr12 116609513 116609675 -4647855 + L1_Rod LINE L1 2267 2427 -3420 1 1474 252 274 0 67 chr12 116609675 116609765 -4647765 + RLTR40 LTR ERVK 26 109 -708 1 1474 192 77 0 0 chr12 116611271 116611297 -4646233 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1474 681 194 8 8 chr12 116613187 116613317 -4644213 + RMER13B LTR ERVK 243 372 -536 1 1474 5335 142 4 2 chr12 116613317 116614150 -4643380 + L1_Mus4 LINE L1 5752 6585 -51 1 1474 364 381 22 18 chr12 116614382 116614882 -4642648 - RMER16-int LTR ERVK -421 4985 4484 1 1474 1615 144 124 0 chr12 116615156 116615447 -4642083 - IAPEY3_LTR LTR ERVK -5 327 1 1 1474 2254 196 30 68 chr12 116615978 116616505 -4641025 - RMER16-int LTR ERVK -1433 3973 3467 1 1474 1382 220 75 24 chr12 116616505 116616836 -4640694 + Lx4B LINE L1 6668 7015 -43 1 1474 22 56 0 0 chr12 116616842 116616878 -4640652 + AT_rich Low_complexity Low_complexity 1 36 0 1 1474 616 327 42 28 chr12 116616905 116617261 -4640269 + L1_Rod LINE L1 5382 5742 -105 1 1474 1058 298 7 10 chr12 116617462 116617757 -4639773 + Lx6 LINE L1 7162 7455 -5 1 1474 319 256 0 23 chr12 116617778 116617866 -4639664 + GA-rich Low_complexity Low_complexity 3 88 0 1 1474 1197 52 0 0 chr12 116617872 116618025 -4639505 + (GAA)n Simple_repeat Simple_repeat 1 153 0 1 1474 427 96 12 12 chr12 116618025 116618109 -4639421 + (CAA)n Simple_repeat Simple_repeat 1 84 0 1 1474 9264 35 3 3 chr12 116618772 116620601 -4636929 - L1Md_T LINE L1 -2 6580 4754 1 1474 3900 129 5 0 chr12 116620575 116621172 -4636358 - L1Md_T LINE L1 -5706 910 311 1 1474 244 343 19 0 chr12 116621241 116621349 -4636181 + MLT1F-int LTR MaLR 388 497 -992 1 1474 1177 114 175 0 chr12 116621921 116622132 -4635398 - L1_Mus1 LINE L1 0 6567 6320 1 1474 6786 111 6 0 chr12 116622133 116623780 -4633750 + L1_Mus1 LINE L1 4973 6567 0 1 1474 267 310 0 11 chr12 116624060 116624148 -4633382 - Lx7 LINE L1 -2 7694 7608 1 1474 260 167 15 15 chr12 116624235 116624302 -4633228 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 1 1474 243 244 0 25 chr12 116624543 116624623 -4632907 - Lx7 LINE L1 0 7696 7619 1 1474 516 96 21 6 chr12 116624665 116624755 -4632775 + L1Md_F2 LINE L1 6139 6207 -431 1 1474 275 80 0 39 chr12 116625735 116625787 -4631743 + (GGA)n Simple_repeat Simple_repeat 2 51 0 1 1474 315 104 0 0 chr12 116626034 116626082 -4631448 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1474 180 0 0 0 chr12 116626082 116626102 -4631428 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1474 300 375 55 8 chr12 116626494 116626747 -4630783 - Lx8 LINE L1 -74 7399 7135 1 1474 857 299 66 21 chr12 116626911 116627290 -4630240 - Lx8 LINE L1 -324 7149 6754 1 1474 23 0 0 0 chr12 116627376 116627399 -4630131 + AT_rich Low_complexity Low_complexity 1 23 0 1 1474 1358 280 29 7 chr12 116627766 116628180 -4629350 + Lx7 LINE L1 6992 7414 -282 1 1474 650 13 13 0 chr12 116628184 116628263 -4629267 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 1474 1355 86 0 5 chr12 116628774 116628962 -4628568 + B2_Mm2 SINE B2 3 189 -6 1 1474 235 125 0 0 chr12 116628962 116629048 -4628482 + L1_Mus1 LINE L1 6518 6567 0 1 1474 360 59 0 0 chr12 116630021 116630072 -4627458 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1474 24 32 0 0 chr12 116630193 116630224 -4627306 + AT_rich Low_complexity Low_complexity 1 31 0 1 1474 757 295 118 0 chr12 116630522 116630854 -4626676 - Lx8 LINE L1 -540 6933 6563 1 1474 194 0 0 37 chr12 116630915 116630942 -4626588 + (CAAAAA)n Simple_repeat Simple_repeat 6 31 0 1 1474 1672 210 52 8 chr12 116631036 116631420 -4626110 + L1_Mur2 LINE L1 5430 5830 -47 1 1474 2719 189 39 0 chr12 116631423 116631994 -4625536 - L1_Mur2 LINE L1 -5758 954 362 1 1474 2543 175 17 4 chr12 116632007 116632471 -4625059 + Lx4B LINE L1 6226 6695 -363 1 1474 911 201 0 16 chr12 116632469 116632651 -4624879 - Lx4B LINE L1 -342 6716 6538 1 1474 1045 188 16 0 chr12 116632742 116632928 -4624602 + Lx5 LINE L1 6333 6521 -529 1 1474 1015 144 0 6 chr12 116635325 116635486 -4622044 + B2_Mm2 SINE B2 2 161 -34 1 1474 857 37 9 0 chr12 116635486 116635595 -4621935 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 1 1474 1559 274 41 7 chr12 116636055 116636496 -4621034 - Lx7 LINE L1 -249 7447 6992 1 1474 345 293 99 7 chr12 116636550 116636701 -4620829 - Lx8 LINE L1 -1109 6364 6200 1 1474 463 165 0 18 chr12 116637328 116637439 -4620091 + CT-rich Low_complexity Low_complexity 1 109 0 1 1474 1014 281 22 32 chr12 116637475 116637498 -4620032 - Lx6 LINE L1 -3 7457 7431 1 1474 212 59 29 0 chr12 116637498 116637532 -4619998 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1474 1014 281 22 32 chr12 116637532 116637824 -4619706 - Lx6 LINE L1 -30 7430 7146 1 1474 1777 141 93 78 chr12 116637990 116638451 -4619079 + IAPLTR2_Mm LTR ERVK 1 468 -7 1 1474 3421 104 19 31 chr12 116638452 116639345 -4618185 + IAPEz-int LTR ERVK 4 662 -5819 1 1474 2623 82 0 3 chr12 116639345 116639688 -4617842 + IAPEz-int LTR ERVK 1359 1700 -4781 1 1474 6291 66 13 4 chr12 116639683 116640504 -4617026 + IAPEz-int LTR ERVK 5653 6481 0 1 1474 1800 168 101 31 chr12 116640504 116640948 -4616582 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1474 561 317 13 13 chr12 116641000 116641305 -4616225 - Lx8 LINE L1 -82 5798 5476 1 1474 1981 304 83 14 chr12 116641439 116641855 -4615675 - Lx7 LINE L1 -565 7131 6662 1 1474 288 53 0 0 chr12 116641855 116641893 -4615637 + (CCCTAA)n Simple_repeat Simple_repeat 5 42 0 1 1474 1981 304 83 14 chr12 116641893 116642258 -4615272 - Lx7 LINE L1 -1035 6661 6296 1 1474 393 127 0 0 chr12 116644098 116644170 -4613360 + B1_Mur4 SINE Alu 49 150 0 1 1474 964 111 7 0 chr12 116644249 116644393 -4613137 - B1_Mus1 SINE Alu 0 148 4 1 1474 3473 69 2 13 chr12 116644408 116644876 -4612654 - L1Md_F2 LINE L1 0 6582 6120 1 1474 255 315 50 95 chr12 116647397 116647597 -4609933 - RLTR25A LTR ERVK -905 198 8 1 1474 763 86 0 0 chr12 116647692 116647797 -4609733 + L1_Mm LINE L1 3768 3872 -2011 1 1474 1359 100 5 0 chr12 116647809 116648009 -4609521 - L1_Mm LINE L1 -515 5368 5168 1 1474 3668 209 4 5 chr12 116648008 116648782 -4608748 - L1_Mm LINE L1 -54 5829 5057 1 1474 509 175 0 0 chr12 116649130 116649227 -4608303 + ORR1A2 LTR MaLR 1 97 -230 1 1474 2990 200 169 22 chr12 116649228 116650086 -4607444 + ORR1A2-int LTR MaLR 1 984 -979 1 1474 3269 184 36 6 chr12 116650090 116650724 -4606806 + ORR1A2-int LTR MaLR 1287 1939 -24 1 1474 818 188 34 0 chr12 116650736 116650885 -4606645 + ORR1A2 LTR MaLR 1 154 -173 1 1474 216 0 0 0 chr12 116651818 116651842 -4605688 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1474 594 0 0 0 chr12 116651935 116652001 -4605529 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1474 1111 72 0 0 chr12 116652056 116652194 -4605336 + B1_Mm SINE Alu 2 139 -8 1 1474 189 0 0 0 chr12 116652194 116652215 -4605315 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1474 423 0 0 0 chr12 116652216 116652263 -4605267 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1475 680 250 8 0 chr12 116654352 116654484 -4603046 + B1_Mus2 SINE Alu 9 141 -6 1 1475 398 279 107 54 chr12 116654671 116655041 -4602489 - RLTR12B LTR ERVK -256 272 5 1 1475 4245 122 5 5 chr12 116655243 116655887 -4601643 - L1_Mus3 LINE L1 -75 6563 5920 2 1475 299 145 113 0 chr12 116655855 116655917 -4601613 - L1_Mus3 LINE L1 -911 5655 5587 2 1475 186 71 0 0 chr12 116656346 116656374 -4601156 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1475 531 0 0 0 chr12 116656586 116656645 -4600885 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2 1475 38317 40 1 3 chr12 116656679 116663114 -4594416 - L1Md_A LINE L1 -1 6584 66 2 1475 366 23 0 0 chr12 116663144 116663187 -4594343 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1475 271 385 43 54 chr12 116663689 116663947 -4593583 + MLT1D LTR MaLR 84 338 -167 2 1475 273 260 27 14 chr12 116664171 116664245 -4593285 - RSINE1 SINE B4 -36 129 55 2 1475 27 96 0 0 chr12 116664303 116664386 -4593144 + AT_rich Low_complexity Low_complexity 1 83 0 2 1475 2154 283 27 17 chr12 116665816 116666624 -4590906 - L1_Mur2 LINE L1 -340 5537 4722 2 1475 1791 259 75 45 chr12 116666624 116667161 -4590369 + RLTR18 LTR ERVK 64 616 0 2 1475 238 279 11 11 chr12 116667470 116667557 -4589973 - Lx7 LINE L1 -2 7694 7608 2 1475 197 111 0 43 chr12 116667650 116667697 -4589833 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 2 1475 21 57 0 0 chr12 116667895 116667930 -4589600 + AT_rich Low_complexity Low_complexity 1 35 0 2 1475 23 0 0 0 chr12 116668042 116668065 -4589465 + AT_rich Low_complexity Low_complexity 1 23 0 2 1475 5668 117 32 2 chr12 116668074 116668947 -4588583 + Lx3_Mus LINE L1 6105 7003 -6 2 1475 1164 137 10 10 chr12 116668985 116669178 -4588352 + L1VL1 LINE L1 1 194 -6228 2 1475 2106 64 161 31 chr12 116669178 116669501 -4588029 - RLTR10B2 LTR ERVK 0 365 1 2 1475 3767 123 8 7 chr12 116669506 116670189 -4587341 - IAPEY3-int LTR ERVK -5 7675 6965 2 1475 1093 115 0 0 chr12 116670253 116670418 -4587112 - IAP-d-int LTR ERVK -1374 5168 5004 2 1475 341 312 59 21 chr12 116670432 116670700 -4586830 - IAPEY3-int LTR ERVK -5530 1012 822 2 1475 2710 53 0 0 chr12 116670840 116671181 -4586349 - RLTR10-int LTR ERVK -995 992 652 2 1475 331 67 0 0 chr12 116671184 116671229 -4586301 - RLTR10-int LTR ERVK -6405 137 93 2 1475 614 62 81 27 chr12 116671229 116671378 -4586152 + CT-rich Low_complexity Low_complexity 3 159 0 2 1475 1189 75 1 19 chr12 116671459 116671639 -4585891 - RLTR10-int LTR ERVK -7314 267 41 2 1475 2261 96 5 110 chr12 116671649 116672057 -4585473 - RLTR10B2 LTR ERVK 0 365 1 2 1475 394 176 0 0 chr12 116672061 116672135 -4585395 + L1VL1 LINE L1 1 74 -6348 2 1475 27353 102 11 45 chr12 116672135 116677424 -4580106 + L1Md_F2 LINE L1 480 5586 -297 2 1475 6969 94 9 4 chr12 116677425 116678414 -4579116 + L1Md_F2 LINE L1 5588 6581 -1 2 1475 2751 58 0 90 chr12 116678775 116679176 -4578354 + RLTR10B2 LTR ERVK 1 365 0 2 1475 1240 58 1 19 chr12 116679185 116679366 -4578164 + RLTR10-int LTR ERVK 40 267 -7314 2 1475 201 271 0 17 chr12 116679407 116679467 -4578063 + A-rich Low_complexity Low_complexity 2 60 0 2 1475 280 144 54 32 chr12 116679472 116679565 -4577965 + GA-rich Low_complexity Low_complexity 4 98 0 2 1475 2590 73 109 0 chr12 116679565 116679950 -4577580 + RLTR10-int LTR ERVK 566 992 -995 2 1475 342 323 33 25 chr12 116680090 116680358 -4577172 + IAP-d-int LTR ERVK 822 1061 -5481 2 1475 327 158 0 0 chr12 116680377 116680434 -4577096 + IAP-d-int LTR ERVK 447 503 -6039 2 1475 1410 115 102 0 chr12 116680434 116680660 -4576870 + IAP-d-int LTR ERVK 5007 5255 -1287 2 1475 3872 151 13 3 chr12 116680664 116681343 -4576187 + IAPEY3-int LTR ERVK 6995 7680 0 2 1475 2635 71 0 88 chr12 116681343 116681743 -4575787 + RLTR10B2 LTR ERVK 1 365 0 2 1475 356 207 46 0 chr12 116681878 116681965 -4575565 + RLTR40 LTR ERVK 24 114 -703 2 1475 33 0 0 0 chr12 116682100 116682133 -4575397 + AT_rich Low_complexity Low_complexity 1 33 0 2 1475 186 216 77 19 chr12 116682188 116682240 -4575290 - MIR3 SINE MIR -33 175 121 2 1475 8059 110 9 4 chr12 116682281 116684275 -4573255 + L1_Mus1 LINE L1 4567 6565 -2 2 1475 866 87 0 8 chr12 116684323 116684451 -4573079 - L1Md_F2 LINE L1 -12 6570 6444 2 1475 579 118 2 0 chr12 116684451 116684548 -4572982 - L1Md_F2 LINE L1 -324 6258 6154 2 1475 387 132 0 0 chr12 116685441 116685509 -4572021 + (ATG)n Simple_repeat Simple_repeat 1 68 0 2 1475 1038 91 7 0 chr12 116685870 116686013 -4571517 - B1_Mus1 SINE Alu 0 148 5 2 1475 741 304 71 10 chr12 116686743 116687138 -4570392 - Lx8 LINE L1 -363 7110 6692 2 1475 22 0 0 0 chr12 116687170 116687192 -4570338 + AT_rich Low_complexity Low_complexity 1 22 0 2 1475 766 276 83 47 chr12 116687552 116687890 -4569640 + Lx7 LINE L1 6992 7341 -355 2 1475 12231 60 3 0 chr12 116688143 116690489 -4567041 - L1Md_F2 LINE L1 -3 6579 4228 2 1475 375 83 0 0 chr12 116690495 116690555 -4566975 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1475 207 0 0 0 chr12 116690886 116690909 -4566621 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1475 612 0 0 0 chr12 116690909 116690976 -4566554 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 1475 282 281 10 10 chr12 116691631 116691728 -4565802 + Lx8 LINE L1 7044 7140 -333 2 1475 294 343 62 11 chr12 116691926 116692103 -4565427 + Lx8 LINE L1 7136 7321 -152 2 1475 24 0 0 0 chr12 116692482 116692506 -4565024 + AT_rich Low_complexity Low_complexity 1 24 0 2 1475 457 254 15 0 chr12 116692554 116692684 -4564846 - Lx8 LINE L1 -563 6910 6779 2 1475 273 376 66 6 chr12 116692720 116692902 -4564628 - Lx8 LINE L1 -813 6660 6468 2 1475 1304 256 51 8 chr12 116692969 116693358 -4564172 + L1_Mur1 LINE L1 5439 5844 -42 2 1475 2203 207 74 7 chr12 116693353 116693922 -4563608 - L1_Mur2 LINE L1 -5755 957 351 2 1475 2987 214 62 11 chr12 116693924 116694646 -4562884 + Lx4B LINE L1 6226 6984 -74 2 1475 237 339 60 60 chr12 116694837 116694886 -4562644 + L1M2 LINE L1 5555 5609 -569 2 1475 182 37 0 36 chr12 116694886 116694914 -4562616 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1475 423 296 24 24 chr12 116694914 116695115 -4562415 + L1M2 LINE L1 5610 5805 -373 2 1475 807 92 0 0 chr12 116695312 116695443 -4562087 + (GA)n Simple_repeat Simple_repeat 2 132 0 2 1475 782 279 25 32 chr12 116695503 116695788 -4561742 + Lx6 LINE L1 7174 7456 -4 2 1475 706 211 0 11 chr12 116695837 116696014 -4561516 + GA-rich Low_complexity Low_complexity 3 177 0 2 1475 402 313 8 0 chr12 116696596 116696730 -4560800 + Lx8 LINE L1 6200 6334 -1139 2 1475 1103 249 50 11 chr12 116696810 116697168 -4560362 + Lx7 LINE L1 6989 7360 -336 2 1475 228 67 0 0 chr12 116697234 116697264 -4560266 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1475 22 80 0 0 chr12 116697421 116697471 -4560059 + AT_rich Low_complexity Low_complexity 1 50 0 2 1475 601 338 55 11 chr12 116697762 116698037 -4559493 + Lx2B LINE L1 6695 6981 -19 2 1475 970 242 23 3 chr12 116698050 116698394 -4559136 + L1_Mur2 LINE L1 2992 3342 -2535 2 1475 886 117 9 1 chr12 116698510 116698672 -4558858 + L1_Rod LINE L1 2267 2427 -3420 2 1475 313 289 0 0 chr12 116698672 116698762 -4558768 + RLTR40 LTR ERVK 26 115 -702 2 1475 706 182 7 14 chr12 116702177 116702316 -4555214 + RMER13B LTR ERVK 243 380 -528 2 1475 4782 157 4 2 chr12 116702316 116703140 -4554390 + L1_Mus4 LINE L1 5761 6585 -51 2 1475 290 373 25 19 chr12 116703372 116703892 -4553638 - RMER16-int LTR ERVK -421 4985 4463 2 1475 1652 131 128 0 chr12 116704145 116704435 -4553095 - IAPEY3_LTR LTR ERVK -5 327 1 2 1475 1694 207 8 30 chr12 116704965 116705359 -4552171 - RMER16-int LTR ERVK -1433 3973 3589 2 1475 203 178 22 0 chr12 116705393 116705438 -4552092 + (CATA)n Simple_repeat Simple_repeat 1 46 0 2 1475 10607 122 17 1 chr12 116708997 116709551 -4547979 + L1_Mus1 LINE L1 4110 4662 -1221 2 1475 330 26 0 0 chr12 116709551 116709590 -4547940 + (CAA)n Simple_repeat Simple_repeat 1 39 0 2 1475 10607 102 15 2 chr12 116709590 116711466 -4546064 + L1_Mus1 LINE L1 4663 6566 -1 2 1475 334 312 56 99 chr12 116713627 116713840 -4543690 - RLTR25A LTR ERVK -895 208 5 2 1475 210 171 0 0 chr12 116715133 116715174 -4542356 + GA-rich Low_complexity Low_complexity 2 42 0 2 1475 5613 184 15 7 chr12 116715332 116716913 -4540617 - Lx LINE L1 -3 6651 5056 2 1475 481 165 31 0 chr12 116717259 116717356 -4540174 + ORR1A2 LTR MaLR 1 100 -227 2 1475 7537 196 88 19 chr12 116717366 116719080 -4538450 + ORR1A2-int LTR MaLR 1 1836 -127 2 1475 4616 107 0 0 chr12 116719080 116719732 -4537798 - L1_Mus1 LINE L1 -4 6563 5912 2 1475 7537 196 88 19 chr12 116719732 116719760 -4537770 + ORR1A2-int LTR MaLR 1837 1863 -100 2 1475 3321 15 0 0 chr12 116719876 116720272 -4537258 + L1Md_T LINE L1 5191 5586 -297 2 1475 8409 36 0 0 chr12 116720272 116721268 -4536262 + L1Md_T LINE L1 5587 6582 0 2 1475 210 37 0 0 chr12 116722601 116722628 -4534902 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 2 1475 6010 87 1 6 chr12 116722741 116723553 -4533977 + RLTR13C2 LTR ERVK 1 808 0 2 1475 649 261 8 0 chr12 116724049 116724179 -4533351 + B1_Mus2 SINE Alu 9 139 -8 2 1475 381 270 74 34 chr12 116724361 116724738 -4532792 - RLTR12B LTR ERVK -99 260 1 2 1475 3935 128 29 11 chr12 116724938 116725569 -4531961 - L1_Mus3 LINE L1 -77 6561 5920 2 1475 390 105 95 0 chr12 116725537 116725613 -4531917 - L1_Mus3 LINE L1 -527 5657 5587 2 1475 483 48 0 0 chr12 116726028 116726090 -4531440 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1475 483 100 0 0 chr12 116726252 116726322 -4531208 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 2 1475 6978 86 18 13 chr12 116726611 116727593 -4529937 - L1Md_F2 LINE L1 -9 6573 5587 2 1475 301 357 43 54 chr12 116727818 116728076 -4529454 + MLT1D LTR MaLR 84 338 -167 2 1475 24 67 0 0 chr12 116728284 116728329 -4529201 + AT_rich Low_complexity Low_complexity 1 45 0 2 1475 230 298 67 0 chr12 116728483 116728587 -4528943 + MLT1D-int LTR MaLR 447 557 -814 2 1475 1853 286 56 13 chr12 116729748 116730531 -4526999 - L1_Mur2 LINE L1 -340 5537 4721 2 1475 1440 260 86 36 chr12 116730626 116731069 -4526461 + RLTR18 LTR ERVK 152 616 0 2 1475 253 183 0 145 chr12 116731376 116731459 -4526071 - Lx7 LINE L1 -2 7694 7624 2 1475 249 119 0 0 chr12 116731523 116731565 -4525965 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1475 5609 131 10 1 chr12 116731974 116732863 -4524667 + Lx3_Mus LINE L1 6105 7001 -8 2 1475 322 277 50 0 chr12 116733296 116733397 -4524133 + RLTR40 LTR ERVK 9 114 -703 2 1475 204 97 0 0 chr12 116734641 116734672 -4522858 + (ATG)n Simple_repeat Simple_repeat 2 32 0 2 1475 342 0 0 0 chr12 116734807 116734845 -4522685 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1475 883 287 87 22 chr12 116735694 116736110 -4521420 - Lx8 LINE L1 -332 7141 6699 2 1475 21 0 0 0 chr12 116736149 116736170 -4521360 + AT_rich Low_complexity Low_complexity 1 21 0 2 1475 230 340 28 72 chr12 116736176 116736426 -4521104 + Lx7 LINE L1 5590 5828 -1868 2 1475 317 123 15 0 chr12 116736895 116736960 -4520570 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 2 1475 309 294 10 0 chr12 116737892 116737994 -4519536 + Lx8 LINE L1 7050 7152 -321 2 1475 248 258 44 29 chr12 116738314 116738382 -4519148 + Lx8 LINE L1 7253 7321 -152 2 1475 237 65 0 0 chr12 116738395 116738426 -4519104 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 3 1475 1039 102 7 0 chr12 116738428 116738575 -4518955 - B1_Mus1 SINE Alu 0 148 1 3 1475 453 287 74 11 chr12 116739002 116739178 -4518352 - Lx8 LINE L1 -534 6939 6753 3 1475 308 351 105 13 chr12 116739189 116739417 -4518113 - Lx8 LINE L1 -813 6660 6412 3 1475 1253 259 59 10 chr12 116739448 116739835 -4517695 + L1_Mur2 LINE L1 5430 5835 -42 3 1475 2793 200 40 2 chr12 116739830 116740412 -4517118 - L1_Mur2 LINE L1 -5755 957 354 3 1475 3867 199 41 10 chr12 116740417 116741216 -4516314 + Lx4B LINE L1 6226 7049 -9 3 1475 575 300 76 44 chr12 116741272 116741422 -4516108 + Lx8 LINE L1 5446 5608 -689 3 1475 212 0 36 0 chr12 116741422 116741450 -4516080 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1475 575 311 38 31 chr12 116741450 116741641 -4515889 + Lx8 LINE L1 5544 5736 -111 3 1475 273 231 0 0 chr12 116741799 116741864 -4515666 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1475 948 270 24 58 chr12 116741869 116742199 -4515331 + Lx6 LINE L1 7138 7456 -4 3 1475 260 216 20 20 chr12 116742217 116742316 -4515214 + GA-rich Low_complexity Low_complexity 2 100 0 3 1475 1011 107 17 6 chr12 116742321 116742499 -4515031 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1475 384 357 25 10 chr12 116743086 116743284 -4514246 + Lx8 LINE L1 6200 6400 -1073 3 1475 1287 239 64 27 chr12 116743302 116743706 -4513824 + Lx7 LINE L1 6989 7407 -289 3 1475 654 68 0 0 chr12 116743716 116743804 -4513726 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 1475 823 303 54 11 chr12 116744305 116744582 -4512948 + Lx2B LINE L1 6695 6983 -17 3 1475 1178 235 17 3 chr12 116744593 116744939 -4512591 + L1_Mur2 LINE L1 2992 3342 -2535 3 1475 986 127 12 0 chr12 116745057 116745230 -4512300 + MusHAL1 LINE L1 1039 1213 -1499 3 1475 321 207 24 24 chr12 116745230 116745314 -4512216 + RLTR40 LTR ERVK 26 109 -708 3 1475 745 163 8 8 chr12 116748709 116748839 -4508691 + RMER13B LTR ERVK 243 372 -536 3 1475 4654 162 8 10 chr12 116748839 116749624 -4507906 + L1_Mus4 LINE L1 5752 6534 -102 3 1475 38914 28 3 7 chr12 116749687 116755677 -4501853 - L1Md_A LINE L1 -1 6581 625 3 1475 3399 53 55 9 chr12 116758140 116758594 -4498936 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1475 5203 102 8 68 chr12 116759223 116760077 -4497453 - RLTR13B4 LTR ERVK 0 803 1 3 1475 199 184 40 20 chr12 116760240 116760290 -4497240 + L3 LINE CR1 3244 3294 -1195 3 1475 230 340 38 28 chr12 116760514 116760620 -4496910 + MLT1D LTR MaLR 87 193 -312 3 1475 24 0 0 0 chr12 116760978 116761002 -4496528 + AT_rich Low_complexity Low_complexity 1 24 0 3 1475 212 320 13 0 chr12 116762956 116763031 -4494499 + CT-rich Low_complexity Low_complexity 4 79 0 3 1475 210 253 0 0 chr12 116765087 116765170 -4492360 + GA-rich Low_complexity Low_complexity 2 84 0 3 1475 5867 176 27 9 chr12 116765314 116766879 -4490651 - Lx LINE L1 -2 6652 5056 3 1475 524 186 0 0 chr12 116767227 116767324 -4490206 + ORR1A2 LTR MaLR 1 97 -230 3 1475 3144 194 169 16 chr12 116767325 116768179 -4489351 + ORR1A2-int LTR MaLR 1 984 -979 3 1475 3380 185 35 5 chr12 116768187 116768840 -4488690 + ORR1A2-int LTR MaLR 1291 1963 0 3 1475 1607 185 19 19 chr12 116768842 116769167 -4488363 + ORR1A2 LTR MaLR 3 327 0 3 1475 2835 92 13 3 chr12 116769720 116770112 -4487418 - MTA_Mm LTR MaLR 0 396 1 3 1475 387 0 0 0 chr12 116771114 116771157 -4486373 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1475 501 71 0 0 chr12 116771321 116771391 -4486139 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1475 29372 102 12 21 chr12 116772381 116777624 -4479906 + L1Md_F2 LINE L1 380 5575 -308 3 1475 6690 93 35 4 chr12 116777628 116778592 -4478938 + L1Md_F2 LINE L1 5587 6580 -2 3 1475 1606 146 119 10 chr12 116778597 116778908 -4478622 + IAPLTR4 LTR ERVK 1 345 0 3 1475 638 267 8 0 chr12 116780034 116780165 -4477365 + B1_Mus2 SINE Alu 9 140 -7 3 1475 395 271 103 40 chr12 116780348 116780716 -4476814 - RLTR15 LTR ERVK -98 261 1 3 1475 753 12 0 0 chr12 116781082 116781168 -4476362 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 1475 983 288 43 21 chr12 116782202 116782621 -4474909 - Lx7 LINE L1 -330 7366 6939 3 1475 795 90 0 0 chr12 116782650 116782761 -4474769 + RLTR45 LTR ERVK 372 482 0 3 1475 2841 64 5 11 chr12 116782770 116783151 -4474379 - RLTR45 LTR ERVK -103 379 1 3 1475 6512 62 0 0 chr12 116783151 116783976 -4473554 - RLTR45-int LTR ERVK 0 7244 6420 3 1475 1902 21 45 0 chr12 116783975 116784218 -4473312 - RLTR45-int LTR ERVK -1764 5480 5227 3 1475 440 132 105 0 chr12 116784621 116784697 -4472833 - RLTR45 LTR ERVK -398 84 1 3 184 882 278 65 43 chr12 116784771 116785185 -4472345 + Lx7 LINE L1 6992 7414 -282 3 1476 591 27 0 0 chr12 116785188 116785261 -4472269 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 3 1476 324 102 0 0 chr12 116785317 116785366 -4472164 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 3 1476 307 21 0 60 chr12 116785612 116785662 -4471868 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1476 3583 48 2 0 chr12 116785818 116786257 -4471273 + L1Md_F2 LINE L1 6139 6578 -4 3 1476 308 253 11 0 chr12 116786782 116786869 -4470661 + Lx8 LINE L1 7062 7149 -324 3 1476 450 289 48 0 chr12 116787669 116787835 -4469695 - Lx8 LINE L1 -540 6933 6760 3 1476 226 264 136 11 chr12 116787853 116787941 -4469589 - Lx8 LINE L1 -813 6660 6562 3 1476 2532 210 24 11 chr12 116788149 116788698 -4468832 + Lx4B LINE L1 6456 7011 -47 3 1476 219 36 0 0 chr12 116788904 116788932 -4468598 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1476 411 297 0 0 chr12 116788965 116789127 -4468403 + Lx8 LINE L1 5602 5774 -1922 3 1476 303 257 104 9 chr12 116789294 116789400 -4468130 + L1MC4a LINE L1 6575 6690 -1192 3 1476 35 0 0 0 chr12 116789400 116789435 -4468095 + AT_rich Low_complexity Low_complexity 1 35 0 3 1476 911 278 15 43 chr12 116789435 116789762 -4467768 + Lx6 LINE L1 7139 7456 -4 3 1476 457 211 8 8 chr12 116789781 116789905 -4467625 + GA-rich Low_complexity Low_complexity 1 124 0 3 1476 432 321 12 0 chr12 116790488 116790653 -4466877 + Lx8 LINE L1 6200 6366 -1107 3 1476 1230 240 36 11 chr12 116790705 116791067 -4466463 + Lx7 LINE L1 6992 7362 -334 3 1476 441 0 0 0 chr12 116791126 116791175 -4466355 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1476 255 61 0 0 chr12 116791175 116791207 -4466323 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1476 1029 139 11 17 chr12 116791640 116791657 -4465873 - B2_Mm2 SINE B2 -19 176 162 3 1476 249 33 0 0 chr12 116791657 116791687 -4465843 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 3 1476 1029 139 11 17 chr12 116791687 116791845 -4465685 - B2_Mm2 SINE B2 -34 161 2 3 1476 441 36 0 0 chr12 116792090 116792145 -4465385 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1476 6212 65 2 5 chr12 116792148 116792964 -4464566 - L1Md_F2 LINE L1 -14 6568 5755 3 1476 1870 50 17 0 chr12 116793339 116793579 -4463951 + L1Md_F3 LINE L1 6325 6568 -16 3 1476 6993 23 11 5 chr12 116793633 116794450 -4463080 - RLTR13B2 LTR ERVK 0 822 1 3 1476 496 258 45 15 chr12 116795848 116795982 -4461548 + B1_Mus2 SINE Alu 9 146 -1 3 1476 2518 48 172 11 chr12 116796228 116796582 -4460948 + IAPLTR2a LTR ERVK 1 411 0 3 1476 913 132 25 94 chr12 116796583 116796784 -4460746 + IAPEz-int LTR ERVK 9 195 -6286 3 1476 226 321 0 0 chr12 116796784 116796837 -4460693 + RLTR27 LTR ERVK 223 275 -34 3 1476 826 77 8 0 chr12 116796837 116796954 -4460576 + IAPEz-int LTR ERVK 168 285 -6196 3 1476 48992 39 14 12 chr12 116796954 116803212 -4454318 + IAPEz-int LTR ERVK 211 6481 0 3 1476 2638 42 146 11 chr12 116803212 116803574 -4453956 + IAPLTR2a LTR ERVK 1 411 0 3 1476 575 39 13 0 chr12 116803774 116803852 -4453678 + (CATA)n Simple_repeat Simple_repeat 4 82 0 3 1476 1387 323 62 52 chr12 116803868 116804982 -4452548 - Lx7 LINE L1 -279 7417 6293 3 1476 8982 21 0 0 chr12 116806002 116807136 -4450394 - L1Md_T LINE L1 -648 5934 4801 3 1476 5336 41 0 3 chr12 116807136 116807778 -4449752 + L1Md_T LINE L1 5940 6579 -3 3 1476 9305 83 7 1 chr12 116808828 116810811 -4446719 - L1Md_F2 LINE L1 -10 6572 4574 3 1476 23 0 0 0 chr12 116811264 116811287 -4446243 + AT_rich Low_complexity Low_complexity 1 23 0 3 1476 347 298 19 28 chr12 116811939 116811962 -4445568 + ID_B1 SINE B4 119 224 0 3 1476 670 48 0 0 chr12 116811962 116812046 -4445484 + B1_Mur4 SINE Alu 67 150 0 3 1476 345 86 0 54 chr12 116812048 116812122 -4445408 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 3 1476 28 0 0 0 chr12 116812134 116812162 -4445368 + AT_rich Low_complexity Low_complexity 1 28 0 3 1476 1169 100 22 6 chr12 116813800 116813981 -4443549 - L1_Mus2 LINE L1 -2 6564 6381 3 1476 260 342 32 113 chr12 116814291 116814512 -4443018 - RLTR25B LTR ERVK -821 207 5 3 1476 6554 93 14 1 chr12 116814715 116815681 -4441849 - L1_Mus2 LINE L1 -1 6565 5588 3 1476 282 95 0 0 chr12 116816099 116816141 -4441389 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1476 24 53 0 0 chr12 116816649 116816687 -4440843 + AT_rich Low_complexity Low_complexity 1 38 0 3 1476 225 371 76 88 chr12 116816885 116817136 -4440394 + MLT1D LTR MaLR 84 331 -174 3 1476 23 33 0 0 chr12 116817346 116817376 -4440154 + AT_rich Low_complexity Low_complexity 1 30 0 3 1476 4438 16 0 0 chr12 116817793 116818286 -4439244 - MT2_Mm LTR ERVL 0 493 1 3 1476 302 0 0 0 chr12 116818286 116818324 -4439206 - MERVL-int LTR ERVL 0 5485 5448 3 1476 390 167 46 35 chr12 116818324 116818411 -4439119 - ORR1A3-int LTR MaLR -1323 640 553 3 1476 45249 15 7 0 chr12 116818411 116823736 -4433794 - MERVL-int LTR ERVL -125 5360 1 3 1476 3709 16 121 0 chr12 116823736 116824176 -4433354 - MT2_Mm LTR ERVL 0 493 1 3 1476 28 0 0 0 chr12 116824741 116824769 -4432761 + AT_rich Low_complexity Low_complexity 1 28 0 3 1476 1764 281 32 25 chr12 116825192 116826002 -4431528 - L1_Mur2 LINE L1 -340 5537 4722 3 1476 2011 224 68 55 chr12 116826002 116826101 -4431429 + RLTR18 LTR ERVK 47 136 -480 3 1476 1224 164 17 33 chr12 116826101 116826252 -4431278 + L1_Mus3 LINE L1 6393 6546 -92 3 1476 4459 128 76 20 chr12 116826252 116827094 -4430436 + RMER17D LTR ERVK 1 889 0 3 1476 1224 164 17 33 chr12 116827094 116827218 -4430312 + L1_Mus3 LINE L1 6547 6638 0 3 1476 2011 224 68 55 chr12 116827218 116827680 -4429850 + RLTR18 LTR ERVK 137 615 -1 3 1476 270 256 11 11 chr12 116828021 116828108 -4429422 - Lx7 LINE L1 -2 7694 7608 3 1476 256 234 0 0 chr12 116828189 116828253 -4429277 + GA-rich Low_complexity Low_complexity 2 65 0 3 1476 23 33 0 0 chr12 116828442 116828472 -4429058 + AT_rich Low_complexity Low_complexity 1 30 0 3 1476 186 43 0 0 chr12 116829451 116829474 -4428056 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1476 5429 121 42 2 chr12 116829485 116830347 -4427183 + Lx3_Mus LINE L1 6105 7000 -9 3 1476 222 343 0 0 chr12 116830353 116830493 -4427037 + A-rich Low_complexity Low_complexity 1 140 0 3 1476 254 240 93 10 chr12 116830787 116830884 -4426646 + RLTR40 LTR ERVK 9 113 -704 3 1476 377 163 11 0 chr12 116832129 116832221 -4425309 + (ATG)n Simple_repeat Simple_repeat 3 95 0 3 1476 180 0 0 0 chr12 116832475 116832495 -4425035 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1476 531 0 0 0 chr12 116832495 116832553 -4424977 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1476 635 304 88 20 chr12 116833367 116833823 -4423707 - Lx8 LINE L1 -324 7149 6663 4 1476 1248 268 22 15 chr12 116834317 116834718 -4422812 + Lx7 LINE L1 6992 7395 -301 4 1476 534 16 0 0 chr12 116834739 116834802 -4422728 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1476 317 0 70 0 chr12 116835120 116835163 -4422367 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1476 310 253 11 0 chr12 116835871 116835958 -4421572 + Lx8 LINE L1 7062 7149 -324 4 1476 270 320 71 16 chr12 116836197 116836324 -4421206 + Lx8 LINE L1 7188 7321 -152 4 1476 918 294 88 0 chr12 116836752 116837137 -4420393 - Lx8 LINE L1 -533 6940 6522 4 1476 202 200 0 0 chr12 116837172 116837217 -4420313 + A-rich Low_complexity Low_complexity 5 49 0 4 1476 1122 260 29 6 chr12 116837337 116837681 -4419849 + L1_Mur2 LINE L1 5481 5832 -45 4 1476 642 176 33 0 chr12 116837679 116837832 -4419698 - L1_Mur2 LINE L1 -5755 957 800 4 1476 6329 95 9 14 chr12 116837830 116839205 -4418325 - L1_Mus2 LINE L1 0 6566 5210 4 1476 897 289 9 34 chr12 116839213 116839535 -4417995 + Lx6 LINE L1 7145 7458 -2 4 1476 978 93 0 0 chr12 116839679 116839818 -4417712 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 4 1476 311 356 6 0 chr12 116839845 116840008 -4417522 + Lx8 LINE L1 6214 6377 -1096 4 1476 750 304 33 7 chr12 116840052 116840353 -4417177 + Lx7 LINE L1 6992 7300 -396 4 1476 260 253 92 0 chr12 116840590 116840677 -4416853 + RLTR40 LTR ERVK 21 115 -702 4 1476 383 97 0 0 chr12 116840820 116840882 -4416648 - Lx LINE L1 -22 6632 6571 4 1476 517 252 23 69 chr12 116840882 116841057 -4416473 - RNLTR23 LTR ERVK 0 642 476 4 1476 1518 152 0 4 chr12 116841308 116841578 -4415952 - Lx LINE L1 -80 6574 6306 4 1476 1111 178 0 21 chr12 116841581 116841822 -4415708 - L1_Mur2 LINE L1 -962 4915 4680 4 1476 230 295 11 0 chr12 116843097 116843192 -4414338 + L1M4 LINE L1 5679 5774 -400 4 1476 6005 95 4 27 chr12 116844779 116845702 -4411828 - L1_Mus2 LINE L1 0 6566 5665 4 1476 229 310 132 9 chr12 116845729 116845843 -4411687 - MLT2B3 LTR ERVL -426 128 1 4 1476 1027 97 7 7 chr12 116846028 116846174 -4411356 - B1_Mm SINE Alu 0 147 2 4 1476 496 147 0 0 chr12 116846202 116846277 -4411253 - B1_Mus2 SINE Alu -12 135 61 4 1476 2586 147 61 51 chr12 116846279 116846815 -4410715 + RMER17B LTR ERVK 1 482 -327 4 1476 275 122 0 20 chr12 116846819 116846869 -4410661 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 4 1476 251 264 70 0 chr12 116847393 116847522 -4410008 + Lx7 LINE L1 5733 5870 -1826 4 1476 331 345 7 20 chr12 116848267 116848418 -4409112 + Lx8 LINE L1 6216 6364 -1109 4 1476 895 283 34 3 chr12 116848473 116848771 -4408759 + Lx7 LINE L1 6992 7298 -398 4 1476 456 226 29 0 chr12 116849004 116849106 -4408424 + RLTR40 LTR ERVK 8 112 -705 4 1476 249 250 107 0 chr12 116849164 116849248 -4408282 - RLTR40 LTR ERVK -724 93 1 4 1476 185 190 0 49 chr12 116850353 116850414 -4407116 + (ATGGTG)n Simple_repeat Simple_repeat 5 62 0 4 1476 358 310 83 57 chr12 116851054 116851440 -4406090 - Lx8 LINE L1 -324 7149 6754 4 1476 816 294 25 9 chr12 116852026 116852342 -4405188 + Lx7 LINE L1 7014 7334 -362 4 1476 606 204 0 0 chr12 116852458 116852807 -4404723 + (TG)n Simple_repeat Simple_repeat 1 349 0 4 1476 382 222 12 0 chr12 116852854 116853021 -4404509 + (TG)n Simple_repeat Simple_repeat 2 170 0 4 1476 223 292 0 0 chr12 116853028 116853117 -4404413 + T-rich Low_complexity Low_complexity 1 89 0 4 1476 234 0 0 0 chr12 116856177 116856203 -4401327 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1476 10634 91 14 4 chr12 116856845 116858420 -4399110 + L1_Mm LINE L1 3995 5586 -297 4 1476 6870 89 26 13 chr12 116858420 116859391 -4398139 + L1Md_F2 LINE L1 5587 6569 -13 4 1476 853 241 49 39 chr12 116859402 116859799 -4397731 - RMER13B LTR ERVK -531 377 2 4 1476 824 182 146 5 chr12 116859858 116860060 -4397470 + Lx3B LINE L1 6760 7057 -1 4 1476 389 70 0 17 chr12 116860097 116860155 -4397375 + (CAAAA)n Simple_repeat Simple_repeat 3 59 0 4 1476 237 308 61 15 chr12 116860856 116860922 -4396608 + ID4_ SINE ID 6 74 -9 4 1476 11262 119 12 13 chr12 116863274 116863424 -4394106 - L1Md_F LINE L1 -2741 3142 2977 4 1476 6069 80 14 4 chr12 116863424 116864224 -4393306 + RLTR13C2 LTR ERVK 1 808 0 4 1476 11262 119 12 13 chr12 116864224 116864754 -4392776 - L1Md_F LINE L1 -2907 2976 2452 4 1476 1567 194 116 11 chr12 116864754 116865124 -4392406 + RLTR9E LTR ERVK 1 409 0 4 1476 11262 147 14 11 chr12 116865124 116866912 -4390618 - L1Md_F LINE L1 -3432 2451 725 4 1476 366 286 43 7 chr12 116866914 116867055 -4390475 - L1Md_F LINE L1 -5807 809 664 4 1476 430 298 31 93 chr12 116867106 116867560 -4389970 - L1VL1 LINE L1 -6019 403 43 4 1476 237 254 185 42 chr12 116867809 116867928 -4389602 + B1F2 SINE Alu 1 136 -13 4 1476 230 340 19 0 chr12 116867931 116868034 -4389496 + Lx8 LINE L1 6453 6557 -916 4 1476 586 157 60 9 chr12 116868136 116868252 -4389278 - B1_Mus1 SINE Alu -2 146 25 4 1476 1043 154 16 5 chr12 116868849 116869038 -4388492 - BGLII LTR ERVK -230 191 1 4 1476 1186 231 19 19 chr12 116869857 116870175 -4387355 + RLTR22_Mur LTR ERVK 1 318 -1530 4 1476 2436 61 3 3 chr12 116870175 116870505 -4387025 + L1Md_F2 LINE L1 5255 5584 -299 4 1476 7584 65 7 0 chr12 116870508 116871480 -4386050 + L1Md_F2 LINE L1 5588 6566 -16 4 1476 926 162 39 0 chr12 116871484 116871663 -4385867 - B2_Mm2 SINE B2 -8 187 2 4 1476 368 152 0 0 chr12 116871663 116871729 -4385801 + Lx4B LINE L1 5776 5841 -1217 4 1476 1978 187 30 9 chr12 116871724 116872249 -4385281 - L1_Mur2 LINE L1 -5755 957 350 4 1476 3164 212 59 16 chr12 116872250 116873047 -4384483 + Lx4B LINE L1 6226 7056 -2 4 1476 534 79 0 0 chr12 116873131 116873207 -4384323 + (GGA)n Simple_repeat Simple_repeat 3 78 0 4 1476 1203 99 7 0 chr12 116873200 116873495 -4384035 + (GAAA)n Simple_repeat Simple_repeat 1 297 0 4 1476 798 41 0 0 chr12 116873499 116873597 -4383933 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 4 1476 23 0 0 0 chr12 116873920 116873943 -4383587 + AT_rich Low_complexity Low_complexity 1 23 0 4 1476 4228 156 16 17 chr12 116875829 116876586 -4380944 + L1_Mus4 LINE L1 5874 6629 -7 4 1476 2345 235 33 18 chr12 116876591 116877106 -4380424 + RMER13B LTR ERVK 386 908 0 4 1476 291 314 57 43 chr12 116877570 116877919 -4379611 - RMER16-int LTR ERVK -674 4732 4379 4 1476 2720 157 10 4 chr12 116878599 116879103 -4378427 - RMER16-int LTR ERVK -1433 3973 3467 4 1476 1405 215 94 22 chr12 116879103 116879465 -4378065 + Lx4B LINE L1 6668 7055 -3 4 1476 497 321 5 23 chr12 116879510 116879868 -4377662 + Lx7 LINE L1 5447 5808 -489 4 1476 209 300 11 11 chr12 116880007 116880098 -4377432 + (TA)n Simple_repeat Simple_repeat 1 91 0 4 1476 951 274 46 26 chr12 116880111 116880418 -4377112 + Lx6 LINE L1 7146 7458 -2 4 1476 318 291 5 48 chr12 116880435 116880519 -4377011 + polypurine Low_complexity Low_complexity 1 80 0 4 1476 1166 83 0 6 chr12 116880519 116880688 -4376842 + (GAA)n Simple_repeat Simple_repeat 3 170 0 4 1476 318 291 5 48 chr12 116880688 116880706 -4376824 + polypurine Low_complexity Low_complexity 81 98 0 4 1476 1222 68 23 0 chr12 116880706 116880882 -4376648 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1476 318 291 5 48 chr12 116880882 116880966 -4376564 + polypurine Low_complexity Low_complexity 99 180 0 4 1476 7636 48 9 2 chr12 116881269 116882691 -4374839 - L1Md_F2 LINE L1 -14 6568 5129 4 1476 483 331 16 0 chr12 116883049 116883233 -4374297 + Lx7 LINE L1 6214 6400 -1073 4 1476 1157 268 17 3 chr12 116883252 116883596 -4373934 + Lx7 LINE L1 6990 7338 -358 4 1476 189 121 0 0 chr12 116883659 116883692 -4373838 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1476 1113 142 0 6 chr12 116884151 116884328 -4373202 - B2_Mm2 SINE B2 -18 177 2 4 1476 24 0 0 0 chr12 116888496 116888520 -4369010 + AT_rich Low_complexity Low_complexity 1 24 0 4 1476 7109 153 15 53 chr12 116888850 116890384 -4367146 + L1Md_F2 LINE L1 4110 5585 -298 4 1476 7734 65 0 2 chr12 116890385 116891381 -4366149 + L1Md_F2 LINE L1 5587 6580 -2 4 1476 6872 104 6 1 chr12 116891382 116892955 -4364575 + L1_Mus1 LINE L1 4990 6567 0 4 1476 26 64 0 0 chr12 116894756 116894803 -4362727 + AT_rich Low_complexity Low_complexity 1 47 0 4 1476 8230 20 0 0 chr12 116895046 116896106 -4361424 - L1Md_A LINE L1 -1 6581 5522 4 1476 310 337 30 85 chr12 116896612 116896813 -4360717 - RLTR25B LTR ERVK -831 197 8 4 1476 198 103 0 0 chr12 116897811 116897840 -4359690 + (GGA)n Simple_repeat Simple_repeat 2 30 0 4 1476 5683 184 12 7 chr12 116897995 116899582 -4357948 - Lx LINE L1 -3 6651 5056 4 1476 507 186 0 0 chr12 116899931 116900028 -4357502 + ORR1A2 LTR MaLR 1 97 -230 4 1476 7519 198 89 12 chr12 116900029 116901725 -4355805 + ORR1A2-int LTR MaLR 1 1825 -138 4 1476 303 71 0 0 chr12 116901732 116901774 -4355756 + (TTA)n Simple_repeat Simple_repeat 1 42 0 4 1476 4704 91 1 1 chr12 116901774 116902415 -4355115 - L1_Mus1 LINE L1 -9 6558 5918 4 1476 7519 198 89 12 chr12 116902415 116902448 -4355082 + ORR1A2-int LTR MaLR 1826 1862 -101 4 1476 405 0 0 0 chr12 116903557 116903602 -4353928 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1476 32549 80 4 2 chr12 116903834 116909743 -4347787 - L1Md_F2 LINE L1 -4 6581 563 4 1476 828 139 14 0 chr12 116909736 116909880 -4347650 - L1Md_F2 LINE L1 -6282 337 192 4 1476 640 206 6 0 chr12 116909911 116910076 -4347454 + T-rich Low_complexity Low_complexity 6 171 0 4 1476 328 335 53 0 chr12 116911258 116911410 -4346120 + MLT1-int LTR MaLR 447 606 -765 4 184 29283 92 2 8 chr12 116911636 116917079 -4340451 + L1Md_F2 LINE L1 177 5586 -297 4 1477 7585 61 13 1 chr12 116917079 116918063 -4339467 + L1Md_F2 LINE L1 5587 6582 0 4 1477 31 0 0 0 chr12 116918082 116918113 -4339417 + AT_rich Low_complexity Low_complexity 1 31 0 4 1477 1510 113 34 0 chr12 116918507 116918746 -4338784 - L1_Mus1 LINE L1 -1 6566 6320 4 1477 6812 103 18 1 chr12 116918746 116920304 -4337226 + L1_Mus1 LINE L1 4972 6566 -1 4 1477 324 158 0 0 chr12 116920339 116920396 -4337134 + GA-rich Low_complexity Low_complexity 1 57 0 4 1477 1285 61 0 11 chr12 116920413 116920595 -4336935 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1477 264 212 210 43 chr12 116920879 116921017 -4336513 - Lx7 LINE L1 -2 7694 7534 4 1477 185 122 0 58 chr12 116921053 116921105 -4336425 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 4 1477 236 236 18 54 chr12 116921468 116921481 -4336049 + A-rich Low_complexity Low_complexity 2 15 0 4 1477 3187 64 19 5 chr12 116921481 116921919 -4335611 + L1Md_F2 LINE L1 6140 6582 0 5 1477 5449 136 24 1 chr12 116921919 116922804 -4334726 + Lx3_Mus LINE L1 6105 7009 0 5 1477 236 236 18 54 chr12 116922804 116922888 -4334642 + A-rich Low_complexity Low_complexity 29 108 0 5 1477 317 213 53 0 chr12 116923224 116923299 -4334231 + RLTR40 LTR ERVK 36 114 -703 5 1477 21 0 0 0 chr12 116923443 116923464 -4334066 + AT_rich Low_complexity Low_complexity 1 21 0 5 1477 34951 34 2 7 chr12 116923478 116928831 -4328699 + L1Md_T LINE L1 266 5586 -297 5 1477 8318 41 0 0 chr12 116928831 116929826 -4327704 + L1Md_T LINE L1 5587 6581 -1 5 1477 191 81 0 51 chr12 116930925 116930964 -4326566 + (GGA)n Simple_repeat Simple_repeat 2 38 0 5 1477 537 16 0 0 chr12 116931020 116931082 -4326448 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1477 23 0 0 0 chr12 116931196 116931219 -4326311 + AT_rich Low_complexity Low_complexity 1 23 0 5 1477 707 137 0 8 chr12 116931264 116931389 -4326141 + (TA)n Simple_repeat Simple_repeat 1 124 0 5 1477 633 69 0 0 chr12 116931389 116931476 -4326054 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1477 507 316 61 42 chr12 116932281 116932658 -4324872 - Lx8 LINE L1 -324 7149 6766 5 1477 1338 278 100 19 chr12 116933140 116933771 -4323759 + Lx7 LINE L1 6992 7673 -23 5 1477 34446 36 2 1 chr12 116935036 116940180 -4317350 + L1Md_T LINE L1 440 5586 -297 5 1477 8402 35 0 0 chr12 116940180 116941176 -4316354 + L1Md_T LINE L1 5587 6582 0 5 1477 264 315 50 95 chr12 116943348 116943548 -4313982 - RLTR25A LTR ERVK -905 198 8 5 1477 715 106 0 4 chr12 116943628 116943752 -4313778 + L1_Mm LINE L1 3759 3879 -2007 5 1477 1352 75 10 0 chr12 116943760 116943959 -4313571 - L1_Mm LINE L1 -515 5368 5168 5 1477 3452 217 1 0 chr12 116943958 116944731 -4312799 - L1_Mm LINE L1 -54 5829 5056 5 1477 535 155 0 0 chr12 116945079 116945176 -4312354 + ORR1A2 LTR MaLR 1 97 -230 5 1477 3044 193 170 23 chr12 116945177 116946035 -4311495 + ORR1A2-int LTR MaLR 1 984 -979 5 1477 3306 205 44 21 chr12 116946033 116946845 -4310685 + ORR1A2-int LTR MaLR 1281 1939 -24 5 1477 1179 69 0 0 chr12 116947942 116948086 -4309444 + B1_Mm SINE Alu 2 145 -2 5 1477 309 223 0 0 chr12 116949071 116949165 -4308365 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 1477 689 252 8 0 chr12 116950240 116950371 -4307159 + B1_Mus2 SINE Alu 9 140 -7 5 1477 393 278 103 57 chr12 116950552 116950929 -4306601 - RLTR12B LTR ERVK -256 272 5 5 1477 4102 117 5 5 chr12 116951128 116951772 -4305758 - L1_Mus3 LINE L1 -75 6563 5920 5 1477 277 145 113 0 chr12 116951740 116951802 -4305728 - L1_Mus3 LINE L1 -911 5655 5587 5 1477 360 0 0 0 chr12 116952231 116952271 -4305259 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1477 375 78 0 0 chr12 116952492 116952543 -4304987 + (TTTTC)n Simple_repeat Simple_repeat 3 53 0 5 1477 317 377 43 54 chr12 116953046 116953304 -4304226 + MLT1D LTR MaLR 84 338 -167 5 1477 282 260 27 14 chr12 116953528 116953602 -4303928 - RSINE1 SINE B4 -36 129 55 5 1477 28 95 0 0 chr12 116953660 116953744 -4303786 + AT_rich Low_complexity Low_complexity 1 84 0 5 1477 22 0 0 0 chr12 116953772 116953794 -4303736 + AT_rich Low_complexity Low_complexity 1 22 0 5 1477 1932 285 27 17 chr12 116955175 116955983 -4301547 - L1_Mur2 LINE L1 -340 5537 4722 5 1477 1890 244 76 47 chr12 116955983 116956520 -4301010 + RLTR18 LTR ERVK 64 616 0 5 1477 238 279 11 11 chr12 116956829 116956916 -4300614 - Lx7 LINE L1 -2 7694 7608 5 1477 200 122 0 39 chr12 116957005 116957056 -4300474 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 5 1477 21 57 0 0 chr12 116957254 116957289 -4300241 + AT_rich Low_complexity Low_complexity 1 35 0 5 1477 23 0 0 0 chr12 116957401 116957424 -4300106 + AT_rich Low_complexity Low_complexity 1 23 0 5 1477 5627 119 32 2 chr12 116957433 116958306 -4299224 + Lx3_Mus LINE L1 6105 7003 -6 5 1477 1164 142 10 10 chr12 116958344 116958537 -4298993 + L1VL1 LINE L1 1 194 -6228 5 1477 2106 64 161 31 chr12 116958537 116958860 -4298670 - RLTR10B2 LTR ERVK 0 365 1 5 1477 3859 114 8 7 chr12 116958865 116959548 -4297982 - IAPEY3-int LTR ERVK -5 7675 6965 5 1477 1034 133 0 0 chr12 116959612 116959777 -4297753 - IAP-d-int LTR ERVK -1374 5168 5004 5 1477 312 329 27 18 chr12 116959791 116960059 -4297471 - IAPEY3-int LTR ERVK -6017 1564 1342 5 1477 2672 65 106 0 chr12 116960199 116960585 -4296945 - RLTR10-int LTR ERVK -995 992 566 5 1477 213 280 0 39 chr12 116960585 116960623 -4296907 + T-rich Low_complexity Low_complexity 41 77 0 5 1477 919 85 42 12 chr12 116960623 116960790 -4296740 + (TTTCC)n Simple_repeat Simple_repeat 3 174 0 5 1477 213 280 0 39 chr12 116960790 116960829 -4296701 + T-rich Low_complexity Low_complexity 3 40 0 5 1477 1262 50 1 19 chr12 116960871 116961052 -4296478 - RLTR10-int LTR ERVK -7314 267 40 5 1477 2357 112 25 17 chr12 116961061 116961423 -4296107 - RLTR10B2 LTR ERVK 0 365 1 5 1477 394 176 0 0 chr12 116961427 116961501 -4296029 + L1VL1 LINE L1 1 74 -6348 5 1477 10943 106 19 10 chr12 116961501 116963918 -4293612 + L1Md_F2 LINE L1 480 2920 -2963 5 1477 33680 46 1 3 chr12 116963924 116969168 -4288362 + L1Md_T LINE L1 262 5589 -297 5 1477 8443 34 0 0 chr12 116969168 116970164 -4287366 + L1Md_T LINE L1 5590 6585 0 5 1477 16953 101 18 1 chr12 116970172 116970768 -4286762 + L1Md_F2 LINE L1 2912 3508 -2375 5 1477 1967 56 0 8 chr12 116970768 116971019 -4286511 + L1Md_F2 LINE L1 6327 6575 -7 5 1477 16953 101 18 1 chr12 116971019 116973054 -4284476 + L1Md_F2 LINE L1 3509 5585 -298 5 1477 6865 92 16 6 chr12 116973055 116974040 -4283490 + L1Md_F2 LINE L1 5588 6582 0 5 1477 2696 66 0 90 chr12 116974401 116974802 -4282728 + RLTR10B2 LTR ERVK 1 365 0 5 1477 1202 70 1 19 chr12 116974811 116974992 -4282538 + RLTR10-int LTR ERVK 40 267 -7314 5 1477 269 151 45 45 chr12 116975080 116975191 -4282339 + GA-rich Low_complexity Low_complexity 3 113 0 5 1477 2592 75 106 3 chr12 116975191 116975578 -4281952 + RLTR10-int LTR ERVK 566 992 -995 5 1477 320 328 64 13 chr12 116975718 116975983 -4281547 + IAPEY3-int LTR ERVK 822 1061 -5481 5 1477 311 175 0 0 chr12 116976002 116976059 -4281471 + IAP-d-int LTR ERVK 447 503 -6039 5 1477 1476 97 102 0 chr12 116976059 116976285 -4281245 + IAP-d-int LTR ERVK 5007 5255 -1287 5 1477 3914 117 8 1 chr12 116976285 116976968 -4280562 + IAPEY3-int LTR ERVK 6965 7680 0 5 1477 2775 66 0 29 chr12 116976968 116977344 -4280186 + RLTR10B2 LTR ERVK 1 365 0 5 1477 356 207 46 0 chr12 116977479 116977566 -4279964 + RLTR40 LTR ERVK 24 114 -703 5 1477 33 0 0 0 chr12 116977701 116977734 -4279796 + AT_rich Low_complexity Low_complexity 1 33 0 5 1477 186 216 77 19 chr12 116977789 116977841 -4279689 - MIR3 SINE MIR -33 175 121 5 1477 8159 108 7 4 chr12 116977882 116979881 -4277649 + L1_Mus1 LINE L1 4567 6565 -2 5 1477 2752 97 0 13 chr12 116979930 116980327 -4277203 - L1Md_F2 LINE L1 -12 6570 6179 5 1477 516 100 0 0 chr12 116981238 116981318 -4276212 + (ATG)n Simple_repeat Simple_repeat 1 80 0 5 1477 1038 91 7 0 chr12 116981679 116981822 -4275708 - B1_Mus1 SINE Alu 0 148 5 5 1477 765 302 71 10 chr12 116982555 116982950 -4274580 - Lx8 LINE L1 -363 7110 6692 5 1477 22 0 0 0 chr12 116982982 116983004 -4274526 + AT_rich Low_complexity Low_complexity 1 22 0 5 1477 773 274 81 42 chr12 116983364 116983699 -4273831 + Lx7 LINE L1 6992 7339 -357 5 1477 8814 54 2 0 chr12 116983952 116985796 -4271734 - L1Md_F2 LINE L1 -3 6579 4732 5 1477 7688 43 0 0 chr12 116985791 116986931 -4270599 - L1Md_T LINE L1 0 6582 5443 5 1477 3700 70 2 0 chr12 116986952 116987469 -4270061 - L1Md_T LINE L1 -1138 4745 4228 5 1477 384 71 0 0 chr12 116987475 116987531 -4269999 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1477 207 0 0 0 chr12 116987859 116987882 -4269648 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1477 432 0 0 0 chr12 116987882 116987929 -4269601 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1477 278 292 10 10 chr12 116988584 116988681 -4268849 + Lx8 LINE L1 7044 7140 -333 5 1477 259 349 62 11 chr12 116988879 116989056 -4268474 + Lx8 LINE L1 7136 7321 -152 5 1477 24 0 0 0 chr12 116989436 116989460 -4268070 + AT_rich Low_complexity Low_complexity 1 24 0 5 1477 483 246 15 0 chr12 116989508 116989638 -4267892 - Lx8 LINE L1 -563 6910 6779 5 1477 279 370 66 6 chr12 116989674 116989856 -4267674 - Lx8 LINE L1 -813 6660 6468 5 1477 1301 250 57 13 chr12 116989923 116990312 -4267218 + L1_Mur1 LINE L1 5439 5844 -42 5 1477 2274 202 74 7 chr12 116990307 116990876 -4266654 - L1_Mur2 LINE L1 -5755 957 351 5 1477 3016 212 89 11 chr12 116990878 116991642 -4265888 + Lx4B LINE L1 6226 7049 -9 5 1477 236 339 60 60 chr12 116991791 116991840 -4265690 + L1M2 LINE L1 5555 5609 -569 5 1477 182 37 0 36 chr12 116991840 116991868 -4265662 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1477 420 296 24 24 chr12 116991868 116992069 -4265461 + L1M2 LINE L1 5610 5805 -373 5 1477 756 89 0 0 chr12 116992267 116992390 -4265140 + (GA)n Simple_repeat Simple_repeat 2 124 0 5 1477 795 275 25 32 chr12 116992450 116992735 -4264795 + Lx6 LINE L1 7174 7456 -4 5 1477 679 229 0 17 chr12 116992738 116992973 -4264557 + GA-rich Low_complexity Low_complexity 1 231 0 5 1477 376 321 8 0 chr12 116993555 116993689 -4263841 + Lx8 LINE L1 6200 6334 -1139 5 1477 1118 246 50 11 chr12 116993769 116994127 -4263403 + Lx7 LINE L1 6989 7360 -336 5 1477 462 36 0 0 chr12 116994193 116994249 -4263281 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1477 22 80 0 0 chr12 116994407 116994457 -4263073 + AT_rich Low_complexity Low_complexity 1 50 0 5 1477 665 327 55 11 chr12 116994747 116995022 -4262508 + Lx2B LINE L1 6695 6981 -19 5 1477 925 250 20 3 chr12 116995035 116995380 -4262150 + L1_Mur2 LINE L1 2992 3342 -2535 5 1477 891 121 9 1 chr12 116995496 116995660 -4261870 + L1_Rod LINE L1 2267 2427 -3420 5 1477 309 264 11 0 chr12 116995660 116995747 -4261783 + RLTR40 LTR ERVK 28 115 -702 5 1477 405 32 15 31 chr12 116997227 116997292 -4260238 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1477 683 194 8 8 chr12 116999184 116999314 -4258216 + RMER13B LTR ERVK 243 372 -536 5 1477 4014 144 13 0 chr12 116999314 117000000 -4257530 + L1_Mus4 LINE L1 5752 6446 -190 5 1477 700 196 0 14 chr12 117000001 117000141 -4257389 + L1_Mus4 LINE L1 6448 6585 -51 1 1477 447 343 46 40 chr12 117000373 117000893 -4256637 - RMER16-int LTR ERVK -421 4985 4463 2 1477 1620 134 124 0 chr12 117001146 117001437 -4256093 - IAPEY3_LTR LTR ERVK -5 327 1 3 1477 1827 204 8 30 chr12 117001968 117002362 -4255168 - RMER16-int LTR ERVK -1433 3973 3589 2 1477 11148 126 17 1 chr12 117005875 117006430 -4251100 + L1_Mus1 LINE L1 4110 4662 -1221 4 1477 297 0 0 0 chr12 117006430 117006463 -4251067 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5 1477 11148 105 15 3 chr12 117006463 117008341 -4249189 + L1_Mus1 LINE L1 4663 6566 -1 4 1477 325 312 56 99 chr12 117010933 117011146 -4246384 - RLTR25A LTR ERVK -895 208 5 6 1477 282 194 0 0 chr12 117013139 117013201 -4244329 + GA-rich Low_complexity Low_complexity 2 63 0 7 1477 6149 174 15 8 chr12 117013358 117014939 -4242591 - Lx LINE L1 -3 6651 5056 8 1477 468 165 31 0 chr12 117015284 117015381 -4242149 + ORR1A2 LTR MaLR 1 100 -227 9 1477 7570 192 92 17 chr12 117015391 117017094 -4240436 + ORR1A2-int LTR MaLR 1 1835 -128 9 1477 513 0 0 0 chr12 117017094 117017151 -4240379 + (TTA)n Simple_repeat Simple_repeat 1 57 0 1 1477 4505 112 0 0 chr12 117017151 117017797 -4239733 - L1_Mus1 LINE L1 -10 6557 5912 1 1477 7570 192 92 17 chr12 117017797 117017825 -4239705 + ORR1A2-int LTR MaLR 1836 1862 -101 9 1477 194 0 39 0 chr12 117019227 117019253 -4238277 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 1 1477 5930 91 1 10 chr12 117019366 117020181 -4237349 + RLTR13C2 LTR ERVK 1 808 0 1 1477 627 269 8 0 chr12 117020681 117020811 -4236719 + B1_Mus2 SINE Alu 9 139 -8 1 1477 430 294 95 36 chr12 117020995 117021354 -4236176 - RLTR12B LTR ERVK -256 272 17 1 1477 4755 136 52 37 chr12 117021570 117022561 -4234969 - L1_Mus3 LINE L1 -77 6561 5563 1 1477 234 383 43 55 chr12 117022762 117023016 -4234514 + MLT1D LTR MaLR 84 334 -171 1 1477 23 68 0 0 chr12 117023232 117023276 -4234254 + AT_rich Low_complexity Low_complexity 1 44 0 1 1477 230 298 67 0 chr12 117023429 117023533 -4233997 + MLT1D-int LTR MaLR 447 557 -814 1 1477 2017 280 54 11 chr12 117024694 117025477 -4232053 - L1_Mur3 LINE L1 -342 5538 4723 1 1477 1678 259 72 69 chr12 117025477 117026045 -4231485 + RLTR18 LTR ERVK 47 616 0 2 1477 26 30 0 0 chr12 117026310 117026343 -4231187 + AT_rich Low_complexity Low_complexity 1 33 0 2 1477 253 183 0 145 chr12 117026352 117026435 -4231095 - Lx7 LINE L1 -2 7694 7624 2 1477 231 36 0 0 chr12 117026499 117026527 -4231003 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1477 209 250 0 0 chr12 117026541 117026597 -4230933 + GA-rich Low_complexity Low_complexity 2 57 0 2 1477 5659 126 15 1 chr12 117026948 117027833 -4229697 + Lx3_Mus LINE L1 6105 7001 -8 2 1477 329 267 50 0 chr12 117028264 117028365 -4229165 + RLTR40 LTR ERVK 9 114 -703 2 1477 207 191 0 0 chr12 117029612 117029654 -4227876 + (ATG)n Simple_repeat Simple_repeat 3 44 0 2 1477 286 103 58 0 chr12 117029778 117029865 -4227665 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 1477 893 308 84 17 chr12 117030695 117031158 -4226372 - Lx8 LINE L1 -324 7149 6656 2 1477 234 333 32 68 chr12 117031185 117031433 -4226097 + Lx7 LINE L1 5590 5828 -1868 3 1477 1211 288 23 30 chr12 117031646 117032076 -4225454 + Lx7 LINE L1 6988 7414 -282 3 1477 369 164 0 0 chr12 117032161 117032234 -4225296 + CT-rich Low_complexity Low_complexity 3 75 0 3 1477 354 218 13 13 chr12 117033163 117033242 -4224288 + Lx8 LINE L1 7062 7140 -333 3 1477 328 343 62 11 chr12 117033440 117033617 -4223913 + Lx8 LINE L1 7136 7321 -152 3 1477 1028 101 0 13 chr12 117033654 117033804 -4223726 - B1_Mus1 SINE Alu 0 148 1 3 1477 482 306 39 0 chr12 117034234 117034414 -4223116 - Lx8 LINE L1 -534 6939 6753 3 1477 379 338 83 9 chr12 117034432 117034650 -4222880 - Lx8 LINE L1 -820 6653 6420 3 1477 1239 254 66 5 chr12 117034688 117035068 -4222462 + L1_Mur2 LINE L1 5430 5832 -45 3 1477 2788 201 42 2 chr12 117035070 117035647 -4221883 - L1_Mur2 LINE L1 -5759 953 354 3 1477 3819 204 56 14 chr12 117035618 117036443 -4221087 + Lx4B LINE L1 6191 7049 -9 3 1477 546 296 88 21 chr12 117036499 117036649 -4220881 + L1M2 LINE L1 5452 5603 -694 3 1477 216 0 0 0 chr12 117036649 117036673 -4220857 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1477 546 296 88 21 chr12 117036673 117036853 -4220677 + L1M2 LINE L1 5604 5804 -493 3 1477 252 268 12 0 chr12 117036994 117037076 -4220454 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1477 904 273 24 58 chr12 117037081 117037411 -4220119 + Lx6 LINE L1 7138 7456 -4 4 1477 700 166 8 39 chr12 117037418 117037673 -4219857 + GA-rich Low_complexity Low_complexity 1 246 0 4 1477 399 353 25 5 chr12 117038265 117038467 -4219063 + Lx8 LINE L1 6200 6405 -1068 4 1477 1298 246 73 38 chr12 117038479 117038931 -4218599 + Lx7 LINE L1 6989 7456 -240 4 1477 483 364 28 1 chr12 117039414 117039689 -4217841 + Lx3C LINE L1 6701 6936 -40 4 1477 1019 252 29 3 chr12 117039699 117040041 -4217489 + L1_Mur2 LINE L1 2992 3342 -2535 4 1477 1034 104 12 0 chr12 117040157 117040330 -4217200 + MusHAL1 LINE L1 1039 1213 -1499 4 1477 370 256 0 0 chr12 117040330 117040420 -4217110 + RLTR40 LTR ERVK 26 115 -702 4 1477 699 153 8 8 chr12 117043825 117043944 -4213586 + RMER13B LTR ERVK 254 372 -536 4 1477 4866 155 5 0 chr12 117043944 117044723 -4212807 + L1_Mus4 LINE L1 5752 6534 -102 5 1478 5175 106 9 68 chr12 117047847 117048700 -4208830 - RLTR13B4 LTR ERVK 0 803 1 5 1478 242 304 47 38 chr12 117049136 117049242 -4208288 + MLT1D LTR MaLR 87 193 -312 5 1478 21 0 0 0 chr12 117049599 117049620 -4207910 + AT_rich Low_complexity Low_complexity 1 21 0 5 1478 208 253 13 39 chr12 117051558 117051636 -4205894 + CT-rich Low_complexity Low_complexity 4 79 0 5 1478 324 267 0 0 chr12 117053703 117053789 -4203741 + GA-rich Low_complexity Low_complexity 2 87 0 5 1478 2012 166 35 25 chr12 117053935 117054331 -4203199 - Lx LINE L1 -2 6652 6253 5 1478 8980 86 3 2 chr12 117054332 117055550 -4201980 - L1_Mm LINE L1 -90 5793 4574 5 1478 24 0 0 0 chr12 117056005 117056029 -4201501 + AT_rich Low_complexity Low_complexity 1 24 0 5 1478 610 77 0 0 chr12 117056707 117056785 -4200745 + B1_Mus2 SINE Alu 64 141 -6 5 1478 532 26 0 38 chr12 117056788 117056868 -4200662 + (TAAA)n Simple_repeat Simple_repeat 4 80 0 6 1478 25 51 0 0 chr12 117056880 117056919 -4200611 + AT_rich Low_complexity Low_complexity 1 39 0 6 1478 3664 50 4 2 chr12 117056942 117057407 -4200123 + L1Md_F2 LINE L1 5121 5586 -297 6 1478 7835 57 1 1 chr12 117057407 117058390 -4199140 + L1Md_F2 LINE L1 5587 6569 -13 6 1478 221 0 0 33 chr12 117058407 117058437 -4199093 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 6 1478 25 51 0 0 chr12 117058449 117058488 -4199042 + AT_rich Low_complexity Low_complexity 1 39 0 6 1478 221 342 0 12 chr12 117059453 117059533 -4197997 + CT-rich Low_complexity Low_complexity 2 80 0 6 1478 21 0 0 0 chr12 117059594 117059615 -4197915 + AT_rich Low_complexity Low_complexity 1 21 0 6 1478 1154 106 22 6 chr12 117060122 117060303 -4197227 - L1_Mus2 LINE L1 -2 6564 6381 6 1478 234 339 32 97 chr12 117060617 117060833 -4196697 - RLTR25B LTR ERVK -822 206 5 6 1478 6966 92 14 1 chr12 117061035 117062001 -4195529 - L1_Mus2 LINE L1 -1 6565 5588 6 1478 501 115 0 0 chr12 117062419 117062497 -4195033 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 1478 3799 177 63 23 chr12 117062554 117063300 -4194230 + RLTR13A LTR ERVK 1 758 -97 7 1478 363 23 0 0 chr12 117063300 117063344 -4194186 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 7 1478 3799 177 63 23 chr12 117063344 117063419 -4194111 + RLTR13A LTR ERVK 759 854 -1 7 1478 21 82 0 0 chr12 117063897 117063946 -4193584 + AT_rich Low_complexity Low_complexity 1 49 0 7 1478 242 364 60 0 chr12 117064787 117064938 -4192592 + MLT1-int LTR MaLR 447 606 -765 7 1478 31 0 0 0 chr12 117065586 117065617 -4191913 + AT_rich Low_complexity Low_complexity 1 31 0 7 1478 2444 266 30 16 chr12 117066040 117066845 -4190685 - L1_Mur2 LINE L1 -340 5537 4722 7 1478 1958 215 79 56 chr12 117066845 117066945 -4190585 + RLTR18 LTR ERVK 47 136 -480 7 1478 1240 154 12 29 chr12 117066945 117067096 -4190434 + L1_Mus3 LINE L1 6393 6543 -95 7 1478 4403 139 71 21 chr12 117067096 117067943 -4189587 + RMER17D LTR ERVK 1 889 0 7 1478 1240 154 12 29 chr12 117067943 117068063 -4189467 + L1_Mus3 LINE L1 6544 6638 0 7 1478 1958 215 79 56 chr12 117068063 117068518 -4189012 + RLTR18 LTR ERVK 137 615 -1 7 1478 417 20 0 0 chr12 117068633 117068683 -4188847 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1478 271 259 12 12 chr12 117068898 117068980 -4188550 - Lx7 LINE L1 -2 7694 7613 8 1478 192 212 0 0 chr12 117069067 117069133 -4188397 + GA-rich Low_complexity Low_complexity 2 67 0 8 1478 207 0 0 0 chr12 117070302 117070325 -4187205 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1478 5629 112 41 2 chr12 117070336 117071199 -4186331 + Lx3_Mus LINE L1 6105 7000 -9 8 1478 35 24 0 0 chr12 117071199 117071241 -4186289 + AT_rich Low_complexity Low_complexity 1 42 0 8 1478 253 240 93 10 chr12 117071628 117071725 -4185805 + RLTR40 LTR ERVK 9 113 -704 8 1478 211 128 26 0 chr12 117072982 117073021 -4184509 + (ATG)n Simple_repeat Simple_repeat 2 41 0 8 1478 246 81 0 0 chr12 117073022 117073059 -4184471 + (GGA)n Simple_repeat Simple_repeat 3 39 0 8 1478 465 19 0 0 chr12 117073307 117073361 -4184169 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 1478 279 0 0 0 chr12 117073361 117073391 -4184139 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1478 827 295 80 19 chr12 117074205 117074630 -4182900 - Lx8 LINE L1 -324 7149 6699 9 1478 1345 278 20 12 chr12 117075157 117075558 -4181972 + Lx7 LINE L1 6992 7395 -301 9 1478 750 43 0 0 chr12 117075592 117075686 -4181844 + (TG)n Simple_repeat Simple_repeat 2 95 0 9 1478 291 121 0 0 chr12 117075993 117076051 -4181479 + (A)n Simple_repeat Simple_repeat 1 58 0 9 1478 409 232 10 0 chr12 117076748 117076847 -4180683 + Lx8 LINE L1 7050 7149 -324 9 1478 297 387 66 23 chr12 117077052 117077356 -4180174 + Lx8 LINE L1 7154 7470 -3 9 1478 1040 274 89 3 chr12 117077645 117077993 -4179537 - Lx8 LINE L1 -533 6940 6563 9 1478 1307 245 67 18 chr12 117078117 117078508 -4179022 + L1_Mur2 LINE L1 5423 5832 -45 9 1478 234 146 91 0 chr12 117078510 117078565 -4178965 - L1_Mur2 LINE L1 -4550 1327 1268 9 1478 6732 114 8 26 chr12 117078594 117080210 -4177320 - L1_Mus2 LINE L1 -1 6565 4976 9 1478 648 0 0 0 chr12 117080742 117080814 -4176716 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1478 2259 333 51 10 chr12 117080842 117081840 -4175690 - Lx7 LINE L1 -368 7328 6290 1 1478 4077 133 11 2 chr12 117082704 117083345 -4174185 - L1_Mus3 LINE L1 0 6638 5992 1 1478 5002 79 5 1 chr12 117083730 117084401 -4173129 + L1_Mus1 LINE L1 5894 6566 -1 1 1478 222 154 0 114 chr12 117084404 117084418 -4173112 + A-rich Low_complexity Low_complexity 2 15 0 1 1478 4917 109 26 0 chr12 117084418 117085150 -4172380 + Lx3_Mus LINE L1 6249 6999 -10 1 1478 222 154 0 114 chr12 117085150 117085223 -4172307 + A-rich Low_complexity Low_complexity 16 79 0 1 1478 331 284 39 0 chr12 117085552 117085654 -4171876 + RLTR40 LTR ERVK 9 114 -703 1 1478 236 191 12 0 chr12 117086907 117086991 -4170539 + (ATG)n Simple_repeat Simple_repeat 2 86 0 1 1478 180 0 0 0 chr12 117087232 117087252 -4170278 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1478 1374 19 0 0 chr12 117087252 117087412 -4170118 + (TG)n Simple_repeat Simple_repeat 2 162 0 1 1478 901 292 76 19 chr12 117088226 117088659 -4168871 - Lx8 LINE L1 -324 7149 6692 1 1478 254 306 31 90 chr12 117088719 117088974 -4168556 + Lx7 LINE L1 5590 5829 -1867 1 1478 1377 268 22 15 chr12 117089179 117089580 -4167950 + Lx7 LINE L1 6992 7395 -301 1 1478 294 50 0 0 chr12 117089601 117089641 -4167889 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1478 342 45 0 0 chr12 117089642 117089686 -4167844 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1478 287 105 18 0 chr12 117089994 117090051 -4167479 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1478 386 242 10 0 chr12 117090731 117090830 -4166700 + Lx8 LINE L1 7050 7149 -324 1 1478 307 381 69 22 chr12 117091020 117091339 -4166191 + Lx8 LINE L1 7137 7470 -3 1 1478 1047 274 89 3 chr12 117091626 117091974 -4165556 - Lx8 LINE L1 -533 6940 6563 1 1478 1306 242 69 13 chr12 117092124 117092501 -4165029 + L1_Mur2 LINE L1 5435 5832 -45 1 1478 234 146 91 0 chr12 117092503 117092558 -4164972 - L1_Mur2 LINE L1 -4550 1327 1268 1 1478 6709 113 8 26 chr12 117092587 117094202 -4163328 - L1_Mus2 LINE L1 -1 6565 4976 1 1478 666 0 0 0 chr12 117094734 117094808 -4162722 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1478 2365 328 51 10 chr12 117094836 117095834 -4161696 - Lx7 LINE L1 -368 7328 6290 1 1478 4028 139 11 2 chr12 117096697 117097339 -4160191 - L1_Mus3 LINE L1 0 6638 5991 1 1478 5015 79 3 1 chr12 117097724 117098395 -4159135 + L1_Mus1 LINE L1 5895 6566 -1 1 1478 4672 117 43 0 chr12 117098412 117099133 -4158397 + Lx3_Mus LINE L1 6249 7000 -9 1 1478 33 25 0 0 chr12 117099134 117099174 -4158356 + AT_rich Low_complexity Low_complexity 1 40 0 1 1478 347 274 39 0 chr12 117099538 117099640 -4157890 + RLTR40 LTR ERVK 9 114 -703 1 1478 186 118 0 0 chr12 117100899 117100933 -4156597 + (GGA)n Simple_repeat Simple_repeat 3 36 0 1 1478 827 112 0 7 chr12 117101320 117101455 -4156075 + (CATATA)n Simple_repeat Simple_repeat 2 135 0 1 1478 869 315 69 12 chr12 117102113 117102534 -4154996 - Lx8 LINE L1 -324 7149 6705 1 1478 279 0 0 0 chr12 117102603 117102634 -4154896 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1478 21 71 0 0 chr12 117102825 117102867 -4154663 + AT_rich Low_complexity Low_complexity 1 42 0 1 1478 1313 154 26 0 chr12 117102883 117103116 -4154414 + L1_Mus3 LINE L1 6394 6632 -6 1 1478 1212 106 0 0 chr12 117103134 117103313 -4154217 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 1 1478 234 329 0 12 chr12 117103918 117104001 -4153529 + MLT-int LTR MaLR 45 126 -1609 1 1478 4569 115 3 0 chr12 117104147 117104843 -4152687 - L1_Mm LINE L1 -1519 4364 3667 1 1478 943 244 9 52 chr12 117104858 117105091 -4152439 + RLTR18 LTR ERVK 386 608 -8 1 1478 807 55 0 0 chr12 117105150 117105259 -4152271 + (GA)n Simple_repeat Simple_repeat 1 109 0 1 1478 235 256 33 33 chr12 117105594 117105715 -4151815 + A-rich Low_complexity Low_complexity 5 125 0 1 1478 301 92 0 0 chr12 117105944 117106006 -4151524 + L1_Mus2 LINE L1 6518 6582 0 1 1478 1044 115 0 0 chr12 117106055 117106203 -4151327 + B1_Mus1 SINE Alu 1 148 0 1 1478 597 73 31 0 chr12 117106203 117106299 -4151231 + (GA)n Simple_repeat Simple_repeat 2 100 0 1 1478 289 98 0 0 chr12 117106299 117106340 -4151190 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 1 1478 386 257 50 0 chr12 117106445 117106546 -4150984 + RLTR40 LTR ERVK 9 114 -703 1 1478 183 184 0 0 chr12 117107780 117107818 -4149712 + GA-rich Low_complexity Low_complexity 2 39 0 1 1478 187 225 28 0 chr12 117108053 117108124 -4149406 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1478 358 355 65 0 chr12 117108588 117108774 -4148756 - Lx8 LINE L1 -140 7333 7136 1 1478 877 291 74 30 chr12 117108941 117109373 -4148157 - Lx8 LINE L1 -324 7149 6699 1 1478 310 323 62 19 chr12 117109420 117109742 -4147788 + Lx7 LINE L1 5540 5929 -374 1 1478 970 306 21 9 chr12 117109879 117110215 -4147315 + Lx7 LINE L1 6992 7331 -365 1 1478 339 25 0 0 chr12 117110291 117110331 -4147199 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1478 312 27 0 0 chr12 117110331 117110367 -4147163 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1478 224 197 15 29 chr12 117110367 117110435 -4147095 + T-rich Low_complexity Low_complexity 1 67 0 1 1478 243 211 0 0 chr12 117110465 117110555 -4146975 + T-rich Low_complexity Low_complexity 1 90 0 1 1478 21 36 0 0 chr12 117110661 117110689 -4146841 + AT_rich Low_complexity Low_complexity 1 28 0 1 1478 6480 182 26 1 chr12 117110955 117112889 -4144641 + Lx LINE L1 4659 6654 0 1 1478 1375 254 14 8 chr12 117113003 117113360 -4144170 + Lx4B LINE L1 6696 7054 -4 1 1478 1585 43 0 0 chr12 117113415 117113603 -4143927 + B2_Mm1a SINE B2 2 189 -4 1 1478 915 178 33 154 chr12 117113616 117113921 -4143609 + RLTR28 LTR ERVL 239 506 -18 1 1478 1080 64 35 0 chr12 117114034 117114175 -4143355 - B1_Mm SINE Alu 0 147 2 1 1478 2024 289 69 12 chr12 117114220 117115139 -4142391 - Lx7 LINE L1 -977 6719 5749 1 1478 802 308 48 3 chr12 117115146 117115459 -4142071 - Lx6 LINE L1 -2 7458 7132 1 1478 974 282 20 3 chr12 117115457 117115749 -4141781 + Lx6 LINE L1 6849 7145 -315 1 1478 435 263 102 5 chr12 117115745 117115951 -4141579 - Lx7 LINE L1 -133 5747 5522 1 1478 5297 132 20 27 chr12 117116254 117118062 -4139468 - L1VL2 LINE L1 -1740 1875 85 1 1478 1038 100 0 0 chr12 117118356 117118536 -4138994 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1478 1535 351 42 9 chr12 117118585 117119624 -4137906 - Lx7 LINE L1 -333 7363 6290 1 1478 6836 16 0 0 chr12 117120277 117121047 -4136483 - L1Md_A LINE L1 0 6582 5813 1 1478 1927 136 35 0 chr12 117122534 117122850 -4134680 - ORR1A2 LTR MaLR 0 327 1 1 1478 24 0 0 0 chr12 117124198 117124222 -4133308 + AT_rich Low_complexity Low_complexity 1 24 0 1 1478 4490 144 47 75 chr12 117124342 117125594 -4131936 - L1_Mus3 LINE L1 0 6638 5440 1 1478 623 232 332 13 chr12 117125593 117125819 -4131711 + Lx4B LINE L1 6730 7027 -31 1 1478 653 134 0 9 chr12 117127088 117127201 -4130329 + (GGA)n Simple_repeat Simple_repeat 3 114 0 1 1478 486 33 0 0 chr12 117128366 117128426 -4129104 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1478 219 324 0 0 chr12 117128428 117128530 -4129000 + T-rich Low_complexity Low_complexity 1 102 0 1 1478 1120 59 0 0 chr12 117128775 117128911 -4128619 + B1_Mm SINE Alu 1 136 -11 1 1478 765 61 0 0 chr12 117128913 117129012 -4128518 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1 1478 821 204 213 13 chr12 117129167 117129542 -4127988 + Lx LINE L1 6198 6647 -7 1 1478 229 364 33 0 chr12 117129829 117129950 -4127580 + MLT-int LTR MaLR 15 139 -1596 1 1478 852 113 60 8 chr12 117129954 117130088 -4127442 + B1_Mus1 SINE Alu 1 141 -7 1 1478 830 100 15 0 chr12 117130089 117130219 -4127311 + (GAAAA)n Simple_repeat Simple_repeat 5 136 0 1 1478 1017 109 11 17 chr12 117130243 117130420 -4127110 + (GGAAA)n Simple_repeat Simple_repeat 1 176 0 1 1478 2175 210 121 0 chr12 117130429 117131006 -4126524 + L1VL2 LINE L1 310 956 -5379 1 1478 666 211 49 7 chr12 117133697 117133840 -4123690 - B1_Mur2 SINE Alu 0 149 1 1 1478 200 176 0 0 chr12 117133850 117133884 -4123646 - MER5A DNA MER1_type -52 137 104 1 1478 239 279 89 0 chr12 117134286 117134365 -4123165 + ID SINE ID 3 88 -136 1 1478 227 340 84 9 chr12 117134590 117134697 -4122833 - ID_B1 SINE B4 -89 135 21 1 1478 972 101 0 0 chr12 117135319 117135468 -4122062 - L1Md_F2 LINE L1 -1 6581 6433 1 1478 22 0 0 0 chr12 117135502 117135524 -4122006 + AT_rich Low_complexity Low_complexity 1 22 0 1 1478 23 78 0 0 chr12 117135542 117135593 -4121937 + AT_rich Low_complexity Low_complexity 1 51 0 1 1478 17242 177 22 11 chr12 117135593 117139424 -4118106 + Lx3_Mus LINE L1 2076 5950 -688 1 1478 652 96 0 0 chr12 117139420 117139514 -4118016 - L1_Mur1 LINE L1 -1300 4586 4493 1 1478 4964 116 34 5 chr12 117139511 117140326 -4117204 + Lx3_Mus LINE L1 6170 7008 -1 1 1478 1267 109 0 0 chr12 117140523 117140715 -4116815 - RLTR22_Mus LTR ERVK -1005 803 612 1 1478 30040 91 8 27 chr12 117140715 117146650 -4110880 - L1Md_F2 LINE L1 -353 6229 410 1 1478 916 279 19 11 chr12 117146675 117147041 -4110489 - L1_Mur3 LINE L1 -790 5090 4722 1 1478 1535 125 8 8 chr12 117147147 117147389 -4110141 + L1_Mus3 LINE L1 6393 6634 -4 1 1478 578 171 185 8 chr12 117147429 117147559 -4109971 + RLTR18 LTR ERVK 140 292 -324 1 1478 638 286 17 77 chr12 117147549 117147784 -4109746 + RLTR18 LTR ERVK 395 615 -1 1 1478 221 233 0 0 chr12 117147858 117147901 -4109629 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1478 268 42 83 0 chr12 117147906 117147954 -4109576 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 1 1478 201 196 0 0 chr12 117148328 117148384 -4109146 + GA-rich Low_complexity Low_complexity 2 57 0 1 1478 5735 136 9 2 chr12 117148724 117149614 -4107916 + Lx3_Mus LINE L1 6105 7000 -9 1 1478 212 261 0 33 chr12 117149628 117149719 -4107811 + A-rich Low_complexity Low_complexity 5 92 0 1 1478 398 248 50 0 chr12 117150017 117150118 -4107412 + RLTR40 LTR ERVK 9 114 -703 1 1478 516 45 0 0 chr12 117151367 117151434 -4106096 + (ATG)n Simple_repeat Simple_repeat 2 68 0 2 1478 492 288 64 26 chr12 117152496 117152760 -4104770 - Lx8 LINE L1 -324 7149 6876 2 1478 22 0 0 0 chr12 117152914 117152936 -4104594 + AT_rich Low_complexity Low_complexity 1 22 0 2 1478 1275 115 21 80 chr12 117153208 117153445 -4104085 + L1_Mus2 LINE L1 6344 6566 0 2 1478 1358 51 11 0 chr12 117153482 117153660 -4103870 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1478 24 0 0 0 chr12 117153756 117153780 -4103750 + AT_rich Low_complexity Low_complexity 1 24 0 2 1478 283 271 35 0 chr12 117154479 117154564 -4102966 + Lx8 LINE L1 7062 7149 -324 2 1478 579 305 68 0 chr12 117155359 117155667 -4101863 - Lx8 LINE L1 -540 6933 6605 2 1478 225 0 0 0 chr12 117155781 117155806 -4101724 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1478 9812 58 2 3 chr12 117155850 117157854 -4099676 - L1Md_F2 LINE L1 -2 6580 4578 2 1478 423 221 42 0 chr12 117157920 117158015 -4099515 + RLTR40 LTR ERVK 9 107 -710 2 1478 402 21 0 0 chr12 117158164 117158211 -4099319 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 2 1478 269 89 0 22 chr12 117159283 117159329 -4098201 + (GGA)n Simple_repeat Simple_repeat 1 45 0 2 1478 429 229 0 0 chr12 117159585 117159690 -4097840 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1478 317 365 72 9 chr12 117159999 117160317 -4097213 - Lx8 LINE L1 0 7473 7136 2 1478 755 296 74 32 chr12 117160482 117160915 -4096615 - Lx8 LINE L1 -324 7149 6699 2 1478 308 337 30 53 chr12 117160981 117161247 -4096283 + Lx7 LINE L1 5592 5851 -1845 2 1478 872 308 18 9 chr12 117161425 117161762 -4095768 + Lx7 LINE L1 6992 7331 -365 2 1478 285 29 0 0 chr12 117161842 117161876 -4095654 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1478 363 23 0 0 chr12 117161876 117161919 -4095611 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1478 225 215 15 15 chr12 117161919 117161985 -4095545 + T-rich Low_complexity Low_complexity 1 66 0 2 1478 246 204 0 0 chr12 117162015 117162103 -4095427 + T-rich Low_complexity Low_complexity 1 88 0 2 1478 6064 208 33 15 chr12 117162499 117164907 -4092623 + Lx LINE L1 4656 7054 -4 2 1478 1505 64 0 0 chr12 117164962 117165150 -4092380 + B2_Mm1a SINE B2 2 189 -4 2 1478 853 189 51 130 chr12 117165150 117165442 -4092088 + RLTR28 LTR ERVL 238 506 -18 2 1478 1105 64 35 0 chr12 117165551 117165692 -4091838 - B1_Mm SINE Alu 0 147 2 2 1478 2131 286 64 13 chr12 117165737 117166661 -4090869 - Lx7 LINE L1 -977 6719 5749 2 1478 794 304 48 3 chr12 117166671 117166981 -4090549 - Lx6 LINE L1 -5 7455 7132 2 1478 999 290 7 0 chr12 117166979 117167272 -4090258 + Lx6 LINE L1 6849 7143 -317 2 1478 541 256 71 5 chr12 117167270 117167482 -4090048 - Lx7 LINE L1 -133 5747 5522 2 1478 5437 130 19 20 chr12 117167787 117169583 -4087947 - L1VL2 LINE L1 -1740 1875 85 2 1478 618 75 0 0 chr12 117169872 117169965 -4087565 + (TC)n Simple_repeat Simple_repeat 1 93 0 2 1478 1631 345 46 14 chr12 117169996 117171036 -4086494 - Lx7 LINE L1 -333 7363 6290 2 1478 1896 152 32 0 chr12 117173165 117173481 -4084049 - ORR1A2 LTR MaLR 0 327 2 2 1478 7211 181 2 106 chr12 117173807 117175653 -4081877 + L1_Mur2 LINE L1 3926 5580 -297 2 1478 8106 46 0 8 chr12 117175653 117176655 -4080875 + L1Md_F2 LINE L1 5587 6580 -2 2 1478 252 363 64 16 chr12 117177080 117177329 -4080201 - Lx8 LINE L1 -74 7399 7139 2 1478 632 296 104 22 chr12 117177493 117177908 -4079622 - Lx8 LINE L1 -324 7149 6701 2 1478 1863 94 7 0 chr12 117177948 117178223 -4079307 - L1_Mus4 LINE L1 -454 6182 5906 2 1478 481 136 45 0 chr12 117178222 117178310 -4079220 + L1_Mus4 LINE L1 6202 6293 -343 2 184 3850 100 20 0 chr12 117178288 117178879 -4078651 + L1Md_F2 LINE L1 4983 5585 -298 2 1479 7929 47 4 5 chr12 117178880 117179864 -4077666 + L1Md_F2 LINE L1 5587 6569 -13 2 1479 1097 81 0 0 chr12 117179987 117180123 -4077407 + B1_Mm SINE Alu 2 137 -10 2 1479 1070 37 0 7 chr12 117180123 117180259 -4077271 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 2 1479 2311 173 55 7 chr12 117180414 117180850 -4076680 + Lx LINE L1 6198 6654 0 2 1479 902 112 60 0 chr12 117181266 117181400 -4076130 + B1_Mus1 SINE Alu 1 142 -6 2 1479 2360 196 105 3 chr12 117181437 117182037 -4075493 + L1VL2 LINE L1 310 970 -5365 2 1479 2057 138 3 6 chr12 117182016 117182379 -4075151 + MusHAL1 LINE L1 873 1234 -1478 2 1479 6677 81 35 24 chr12 117182384 117183991 -4073539 - L1VL1 LINE L1 -3612 2271 639 2 1479 662 122 0 0 chr12 117183987 117184085 -4073445 - L1VL1 LINE L1 -6131 507 410 2 1479 864 264 33 17 chr12 117184110 117184472 -4073058 - L1_Mur3 LINE L1 -790 5090 4723 2 1479 1558 254 74 101 chr12 117184472 117184567 -4072963 + RLTR18 LTR ERVK 47 139 -477 2 1479 1510 132 8 4 chr12 117184567 117184811 -4072719 + L1_Mus3 LINE L1 6393 6637 -1 2 1479 1558 254 74 101 chr12 117184811 117185297 -4072233 + RLTR18 LTR ERVK 140 612 -4 2 1479 275 80 40 0 chr12 117185430 117185480 -4072050 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 2 1479 29 28 0 0 chr12 117185636 117185672 -4071858 + AT_rich Low_complexity Low_complexity 1 36 0 2 1479 245 232 0 0 chr12 117185839 117185895 -4071635 + GA-rich Low_complexity Low_complexity 2 57 0 2 1479 12848 68 1 2 chr12 117186230 117187999 -4069531 + L1Md_F2 LINE L1 3821 5586 -297 2 1479 7754 62 5 0 chr12 117187999 117188978 -4068552 + L1Md_F2 LINE L1 5587 6570 -12 2 1479 5927 118 12 1 chr12 117188993 117189880 -4067650 + Lx3_Mus LINE L1 6105 7001 -8 2 1479 206 233 0 16 chr12 117189894 117189955 -4067575 + A-rich Low_complexity Low_complexity 5 64 0 2 1479 378 228 48 19 chr12 117190282 117190385 -4067145 + RLTR40 LTR ERVK 9 114 -703 2 1479 396 0 0 0 chr12 117191569 117191613 -4065917 + (ATG)n Simple_repeat Simple_repeat 2 45 0 2 1479 318 346 48 5 chr12 117192315 117192501 -4065029 - Lx8 LINE L1 -145 7328 7135 2 1479 845 294 75 16 chr12 117192666 117193092 -4064438 - Lx8 LINE L1 -324 7149 6699 2 1479 22 0 0 0 chr12 117193128 117193150 -4064380 + AT_rich Low_complexity Low_complexity 1 22 0 2 1479 345 93 0 0 chr12 117193157 117193211 -4064319 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1479 1369 104 13 80 chr12 117193447 117193686 -4063844 + L1_Mus2 LINE L1 6344 6566 0 2 1479 260 305 0 12 chr12 117194337 117194420 -4063110 + MLT-int LTR MaLR 45 126 -1609 2 1479 339 235 35 0 chr12 117194536 117194621 -4062909 + Lx8 LINE L1 7062 7149 -324 2 1479 727 320 82 0 chr12 117195417 117195783 -4061747 - Lx8 LINE L1 -533 6940 6545 2 1479 1627 203 51 18 chr12 117195977 117196369 -4061161 + L1_Mur2 LINE L1 5431 5835 -42 2 1479 2719 184 48 0 chr12 117196364 117196944 -4060586 - L1_Mur2 LINE L1 -5755 957 350 2 1479 3563 202 38 23 chr12 117196945 117197761 -4059769 + Lx4B LINE L1 6226 7053 -5 2 1479 560 300 43 12 chr12 117197887 117198260 -4059270 + Lx6 LINE L1 5504 5892 -1752 2 1479 273 212 50 0 chr12 117198317 117198397 -4059133 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 2 1479 902 321 0 28 chr12 117198401 117198725 -4058805 + Lx6 LINE L1 7136 7450 -10 2 1479 1620 58 0 0 chr12 117198774 117199102 -4058428 + (GGAGAA)n Simple_repeat Simple_repeat 1 328 0 2 1479 1206 0 0 0 chr12 117199102 117199236 -4058294 + (GAA)n Simple_repeat Simple_repeat 1 134 0 2 1479 311 361 12 0 chr12 117199372 117199541 -4057989 + Lx8 LINE L1 6200 6370 -1103 2 1479 804 274 53 7 chr12 117199592 117199875 -4057655 + Lx7 LINE L1 6992 7287 -409 2 1479 428 163 23 0 chr12 117200108 117200194 -4057336 + RLTR40 LTR ERVK 23 110 -707 2 1479 2201 81 0 0 chr12 117200215 117200510 -4057020 + L1_Mus1 LINE L1 6136 6430 -137 2 1479 6683 51 1 0 chr12 117200509 117201387 -4056143 - L1_Mm LINE L1 -399 5484 4606 2 1479 400 232 42 0 chr12 117201482 117201577 -4055953 + RLTR40 LTR ERVK 9 107 -710 2 1479 315 104 0 0 chr12 117202821 117202869 -4054661 + (GGA)n Simple_repeat Simple_repeat 1 48 0 2 1479 351 245 0 0 chr12 117203125 117203219 -4054311 + (TG)n Simple_repeat Simple_repeat 2 95 0 2 1479 282 365 72 9 chr12 117203526 117203844 -4053686 - Lx8 LINE L1 0 7473 7136 2 1479 762 287 76 35 chr12 117204009 117204442 -4053088 - Lx8 LINE L1 -324 7149 6699 2 1479 289 341 30 53 chr12 117204508 117204774 -4052756 + Lx7 LINE L1 5592 5851 -1845 2 1479 738 326 18 9 chr12 117204952 117205289 -4052241 + Lx7 LINE L1 6992 7331 -365 2 1479 372 22 0 0 chr12 117205373 117205418 -4052112 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1479 249 182 15 29 chr12 117205418 117205486 -4052044 + T-rich Low_complexity Low_complexity 1 67 0 2 1479 284 174 0 39 chr12 117205516 117205618 -4051912 + T-rich Low_complexity Low_complexity 1 98 0 2 1479 6330 173 20 1 chr12 117206017 117207662 -4049868 + Lx LINE L1 4659 6345 -309 2 1479 2959 36 5 83 chr12 117207665 117208085 -4049445 - RLTR10 LTR ERVK -3 387 1 2 1479 8450 15 0 0 chr12 117208087 117209082 -4048448 - RLTR10-int LTR ERVK -3 1984 990 2 1479 7415 29 30 0 chr12 117209161 117210081 -4047449 - RLTR10-int LTR ERVK -999 988 41 2 1479 3067 81 39 64 chr12 117210091 117210578 -4046952 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1479 1206 193 64 0 chr12 117210582 117210846 -4046684 + Lx2 LINE L1 6691 6971 -26 2 1479 213 0 0 75 chr12 117210846 117210886 -4046644 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 2 1479 1221 240 13 7 chr12 117210994 117211296 -4046234 + Lx4B LINE L1 6695 6998 -60 2 1479 1139 228 41 72 chr12 117211321 117211408 -4046122 + RLTR28 LTR ERVL 173 252 -272 2 1479 1531 57 0 20 chr12 117211408 117211605 -4045925 + B2_Mm1t SINE B2 1 193 0 2 1479 1139 228 41 72 chr12 117211605 117211862 -4045668 + RLTR28 LTR ERVL 253 506 -18 2 1479 2283 293 48 18 chr12 117211987 117212945 -4044585 - Lx7 LINE L1 -977 6719 5729 2 1479 899 313 17 0 chr12 117212966 117213263 -4044267 + Lx6 LINE L1 6842 7143 -317 2 1479 455 302 66 0 chr12 117213261 117213473 -4044057 - Lx7 LINE L1 -133 5747 5522 2 1479 5668 125 25 15 chr12 117213771 117215559 -4041971 - L1VL2 LINE L1 -1740 1875 79 2 1479 27 29 0 0 chr12 117215621 117215655 -4041875 + AT_rich Low_complexity Low_complexity 1 34 0 2 1479 6851 93 9 1 chr12 117215657 117217341 -4040189 - L1_Mus2 LINE L1 -3 6563 4862 2 1479 3618 82 0 4 chr12 117217342 117217830 -4039700 + L1_Mus1 LINE L1 6082 6567 0 2 1479 284 159 0 16 chr12 117217834 117217898 -4039632 + L1_Mur3 LINE L1 3651 3713 -2167 2 1479 1184 259 80 7 chr12 117217931 117218396 -4039134 + Lx4B LINE L1 6444 7004 -46 2 1479 255 103 0 0 chr12 117218409 117218448 -4039082 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 2 1479 257 89 22 0 chr12 117219725 117219770 -4037760 + (ATG)n Simple_repeat Simple_repeat 2 47 0 2 1479 4801 17 2 0 chr12 117220656 117221247 -4036283 + L1_Mm LINE L1 3768 4359 -1524 2 1479 36439 50 0 3 chr12 117221254 117228152 -4029378 - L1Md_T LINE L1 0 6585 1 2 1479 10435 13 0 4 chr12 117228153 117229397 -4028133 + L1_Mm LINE L1 4345 5586 -297 2 1479 8758 16 0 2 chr12 117229397 117230394 -4027136 + L1Md_A LINE L1 5587 6581 -1 2 1479 10435 13 0 4 chr12 117230394 117230410 -4027120 + L1_Mm LINE L1 5587 5600 -283 2 1479 200 163 23 0 chr12 117231757 117231800 -4025730 + (TCCG)n Simple_repeat Simple_repeat 3 46 0 3 1479 4689 95 93 105 chr12 117232377 117233281 -4024249 + RLTR13B1 LTR ERVK 1 893 0 3 1479 711 310 83 13 chr12 117233517 117233965 -4023565 - Lx8 LINE L1 -332 7141 6663 3 1479 22 0 0 0 chr12 117233973 117233995 -4023535 + AT_rich Low_complexity Low_complexity 1 22 0 3 1479 1305 268 20 12 chr12 117234462 117234863 -4022667 + Lx7 LINE L1 6992 7395 -301 3 1479 315 0 0 0 chr12 117234884 117234919 -4022611 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1479 378 85 0 0 chr12 117234919 117234977 -4022553 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1479 268 256 13 0 chr12 117235581 117235659 -4021871 + Lx8 LINE L1 7062 7140 -333 3 1479 266 320 71 16 chr12 117235907 117236034 -4021496 + Lx8 LINE L1 7188 7321 -152 3 1479 669 247 76 0 chr12 117236462 117236685 -4020845 - Lx8 LINE L1 -533 6940 6701 3 1479 346 0 0 0 chr12 117236685 117236727 -4020803 - RLTR13B4 LTR ERVK -417 386 345 3 1479 1518 32 0 0 chr12 117236718 117236906 -4020624 - RLTR13D5 LTR ERVK -510 513 326 3 1479 22 35 0 0 chr12 117237123 117237152 -4020378 + AT_rich Low_complexity Low_complexity 1 29 0 3 1479 442 246 95 17 chr12 117237171 117237403 -4020127 - Lx7 LINE L1 0 7696 7447 3 1479 396 245 39 0 chr12 117237698 117237800 -4019730 + RLTR40 LTR ERVK 9 114 -703 3 1479 242 151 38 0 chr12 117239032 117239085 -4018445 + GA-rich Low_complexity Low_complexity 6 60 0 3 1479 1063 118 6 6 chr12 117239092 117239131 -4018399 + (GAA)n Simple_repeat Simple_repeat 1 38 0 3 1479 1257 90 0 0 chr12 117239131 117239308 -4018222 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 3 1479 1063 118 6 6 chr12 117239308 117239447 -4018083 + (GAA)n Simple_repeat Simple_repeat 3 142 0 3 1479 345 246 32 32 chr12 117240593 117240719 -4016811 + Lx7 LINE L1 7206 7331 -365 3 1479 1112 41 7 0 chr12 117240806 117240952 -4016578 + (TG)n Simple_repeat Simple_repeat 2 148 0 3 1479 4906 93 27 1 chr12 117241409 117242111 -4015419 - L1_Mus3 LINE L1 -6 6632 5913 3 1479 7519 114 7 5 chr12 117242111 117244189 -4013341 + L1_Mus3 LINE L1 4561 6638 0 3 1479 1446 182 7 15 chr12 117244311 117244584 -4012946 + ORR1A3 LTR MaLR 5 275 -51 3 1479 1038 88 7 0 chr12 117244596 117244732 -4012798 + B1_Mus2 SINE Alu 1 137 -10 3 1479 204 40 0 0 chr12 117244732 117244757 -4012773 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1479 815 271 73 0 chr12 117245194 117245496 -4012034 - Lx8 LINE L1 -540 6933 6610 3 1479 450 0 0 0 chr12 117245601 117245651 -4011879 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 3 1479 1713 184 51 10 chr12 117245744 117246134 -4011396 + L1_Mur2 LINE L1 5430 5835 -42 3 1479 3089 162 25 2 chr12 117246129 117246723 -4010807 - L1_Mur2 LINE L1 -5755 957 350 3 1479 4267 167 45 11 chr12 117246724 117247530 -4010000 + Lx4B LINE L1 6226 7058 0 3 1479 264 289 10 0 chr12 117248815 117248912 -4008618 + L1M2 LINE L1 5677 5774 -526 3 1479 1094 96 7 0 chr12 117248922 117249068 -4008462 + B1_Mus1 SINE Alu 2 148 0 3 1479 27 29 0 0 chr12 117250732 117250766 -4006764 + AT_rich Low_complexity Low_complexity 1 34 0 3 1479 22 56 0 0 chr12 117250987 117251023 -4006507 + AT_rich Low_complexity Low_complexity 1 36 0 3 1479 1035 64 6 6 chr12 117251338 117251495 -4006035 - MusHAL1 LINE L1 -632 2080 1924 3 1479 493 143 0 0 chr12 117251487 117251571 -4005959 - MusHAL1 LINE L1 -1082 1630 1547 3 1479 2517 122 52 0 chr12 117251571 117251971 -4005559 + BGLII LTR ERVK 1 421 0 3 1479 7122 93 31 1 chr12 117252270 117254103 -4003427 + L1Md_F2 LINE L1 371 2261 -3622 3 1479 11782 60 1 71 chr12 117254098 117255930 -4001600 + L1Md_F2 LINE L1 3884 5586 -297 3 1479 7869 57 2 3 chr12 117255930 117256927 -4000603 + L1Md_F2 LINE L1 5587 6582 0 3 1479 2579 59 0 3 chr12 117256927 117257266 -4000264 + L1Md_F2 LINE L1 5249 5586 -297 3 1479 7794 54 1 5 chr12 117257266 117258247 -3999283 + L1Md_F2 LINE L1 5587 6563 -19 3 1479 6316 36 0 0 chr12 117258878 117259622 -3997908 + L1Md_T LINE L1 5838 6581 -1 3 1479 1617 300 0 0 chr12 117259768 117260328 -3997202 + MYSERV6-int LTR ERVK 452 1011 -7948 3 1479 12503 234 36 33 chr12 117260355 117263824 -3993706 + MYSERV6-int LTR ERVK 1131 4612 -4347 3 1479 3941 49 8 4 chr12 117263834 117264326 -3993204 - L1Md_F3 LINE L1 0 6584 6091 3 1479 1583 62 62 0 chr12 117264422 117264631 -3992899 - RLTR13B3 LTR ERVK -707 222 1 3 1479 2539 97 19 6 chr12 117264631 117265091 -3992439 - L1Md_Gf LINE L1 -5383 1236 729 3 1479 2149 201 22 38 chr12 117265146 117265699 -3991831 - L1_Rod LINE L1 -1710 4137 3594 3 1479 439 162 0 14 chr12 117265726 117265795 -3991735 + B1_Mur4 SINE Alu 14 81 -69 3 1479 3062 61 5 10 chr12 117266576 117266974 -3990556 - MTA_Mm LTR MaLR 0 396 1 3 1479 23 0 0 0 chr12 117268210 117268233 -3989297 + AT_rich Low_complexity Low_complexity 1 23 0 3 1479 522 172 35 92 chr12 117268834 117269007 -3988523 - RLTR43A LTR ERVK 0 364 202 3 1479 2078 120 3 77 chr12 117270782 117270927 -3986603 - ORR1A2 LTR MaLR 0 327 188 3 1479 5980 118 48 19 chr12 117270927 117271921 -3985609 + RLTR13D5 LTR ERVK 1 1023 0 3 1479 2078 120 3 77 chr12 117271921 117272128 -3985402 - ORR1A2 LTR MaLR -140 187 1 3 1479 486 267 73 78 chr12 117272224 117272443 -3985087 + B4 SINE B4 3 220 -72 3 1479 1061 31 0 0 chr12 117272318 117272445 -3985085 + B1_Mm SINE Alu 17 143 -4 3 1479 1405 38 6 0 chr12 117272445 117272761 -3984769 + (GAAA)n Simple_repeat Simple_repeat 1 317 0 3 1479 450 0 0 0 chr12 117272761 117272811 -3984719 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 3 1479 1140 124 0 0 chr12 117272811 117272989 -3984541 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1479 520 154 101 36 chr12 117273068 117273236 -3984294 - Lx9 LINE L1 0 7644 7466 3 1479 579 189 53 96 chr12 117273240 117273427 -3984103 + Lx7 LINE L1 5595 5773 -1923 3 1479 245 283 0 0 chr12 117273950 117274003 -3983527 + (CGG)n Simple_repeat Simple_repeat 2 54 0 3 1479 1067 154 93 18 chr12 117274106 117274331 -3983199 - Lx4B LINE L1 0 7058 6817 3 1479 4262 203 83 34 chr12 117274384 117275462 -3982068 + Lx6 LINE L1 5780 6910 -550 3 1479 733 42 0 68 chr12 117275484 117275513 -3982017 - B1_Mm SINE Alu -10 137 115 3 1479 2511 47 3 48 chr12 117275513 117275850 -3981680 - RLTRETN_Mm LTR ERVK 0 322 1 3 1479 733 42 0 68 chr12 117275850 117275923 -3981607 - B1_Mm SINE Alu -33 114 42 3 1479 235 198 112 56 chr12 117275860 117275967 -3981563 - RLTR25B LTR ERVK -519 509 397 3 1479 385 0 5 159 chr12 117275968 117276176 -3981354 + (CTCTG)n Simple_repeat Simple_repeat 5 180 0 3 1479 298 161 0 35 chr12 117276177 117276235 -3981295 - B1_Mur4 SINE Alu -90 60 5 3 1479 375 191 67 0 chr12 117276237 117276326 -3981204 + Lx6 LINE L1 6915 7009 -451 3 1479 772 251 0 6 chr12 117276344 117276512 -3981018 + Lx6 LINE L1 7077 7243 -217 3 1479 40440 28 1 6 chr12 117276513 117282714 -3974816 - L1Md_T LINE L1 0 6582 416 3 1479 654 201 180 26 chr12 117282713 117282902 -3974628 + Lx6 LINE L1 7232 7449 -11 3 1479 2148 151 50 98 chr12 117282957 117283397 -3974133 - MTC LTR MaLR 0 421 3 3 1479 24 0 0 0 chr12 117283774 117283798 -3973732 + AT_rich Low_complexity Low_complexity 1 24 0 3 1479 1534 249 135 16 chr12 117283957 117284446 -3973084 + Lx5 LINE L1 5817 6363 -687 3 1479 1355 283 81 21 chr12 117284448 117284928 -3972602 + Lx5 LINE L1 6484 6992 -58 3 1479 240 213 156 26 chr12 117286736 117286813 -3970717 - RMER15 LTR ERVL -85 490 404 3 1479 1585 245 81 8 chr12 117287585 117287968 -3969562 - Lx6 LINE L1 -23 7437 7027 3 1479 227 318 0 22 chr12 117288039 117288129 -3969401 - L1M3de LINE L1 -5779 874 787 3 1479 424 329 42 15 chr12 117288166 117288364 -3969166 - L1M3de LINE L1 -6189 464 297 3 1479 260 338 30 8 chr12 117288636 117288770 -3968760 - RMER15 LTR ERVL -15 560 424 3 1479 546 16 0 0 chr12 117291562 117291625 -3965905 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1479 28 29 0 0 chr12 117292137 117292172 -3965358 + AT_rich Low_complexity Low_complexity 1 35 0 3 1479 320 276 13 0 chr12 117292231 117292307 -3965223 - PB1D10 SINE Alu -38 79 3 3 1479 396 277 7 14 chr12 117293183 117293326 -3964204 + MurSatRep1 Unknown Unknown 607 748 -1389 3 1479 231 36 0 0 chr12 117293787 117293815 -3963715 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1479 312 290 92 48 chr12 117294326 117294554 -3962976 - L1M4 LINE L1 -3499 2647 2410 3 1479 1142 210 184 11 chr12 117294559 117294906 -3962624 - MTD LTR MaLR 0 419 13 3 1479 385 278 44 0 chr12 117295998 117296088 -3961442 + B3A SINE B2 64 157 -41 3 1479 390 42 0 0 chr12 117296090 117296138 -3961392 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1479 313 257 118 39 chr12 117296173 117296412 -3961118 + L1MA6 LINE L1 5777 6022 -269 3 1479 200 44 26 105 chr12 117297150 117297226 -3960304 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 3 1479 613 215 41 38 chr12 117298257 117299127 -3958403 + MMSAT4 Satellite Satellite 1 872 -14 3 1479 476 300 108 21 chr12 117300984 117301178 -3956352 + ORR1E LTR MaLR 138 348 -11 3 1479 759 251 91 15 chr12 117301597 117301795 -3955735 - B3 SINE B2 0 216 4 3 1479 553 206 15 44 chr12 117302700 117302837 -3954693 - ORR1D2 LTR MaLR -230 140 8 3 1479 346 159 0 55 chr12 117302845 117302918 -3954612 - ORR1D2-int LTR MaLR -1 1369 1301 3 1479 770 302 109 35 chr12 117303362 117303739 -3953791 + MTD LTR MaLR 13 417 -2 3 1479 1396 206 105 20 chr12 117304056 117304398 -3953132 + ORR1D1 LTR MaLR 1 371 -3 3 1479 902 226 19 5 chr12 117304401 117304614 -3952916 + ORR1D1-int LTR MaLR 1 216 -1154 3 1479 280 191 175 88 chr12 117304732 117304909 -3952621 - RLTR18B LTR ERVK -134 482 188 3 1479 525 299 78 16 chr12 117305002 117305247 -3952283 - RLTR18B LTR ERVK -241 271 12 3 1479 1839 218 126 6 chr12 117305249 117305894 -3951636 + ORR1D1-int LTR MaLR 211 1062 -518 3 1479 363 237 15 27 chr12 117305960 117306297 -3951233 + (TATATG)n Simple_repeat Simple_repeat 1 332 0 3 1479 241 233 27 14 chr12 117306298 117306372 -3951158 + (TATG)n Simple_repeat Simple_repeat 1 75 0 3 1479 4772 96 63 78 chr12 117306372 117307096 -3950434 + RMER12 LTR ERVK 1 767 -555 3 1479 504 32 0 0 chr12 117307096 117307158 -3950372 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1479 4772 96 63 78 chr12 117307158 117307334 -3950196 + RMER12 LTR ERVK 768 888 -434 3 1479 276 30 0 0 chr12 117307334 117307367 -3950163 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1479 273 312 128 58 chr12 117307367 117307411 -3950119 + RLTR21 LTR ERVK 1287 1328 -244 3 1479 279 159 0 0 chr12 117307412 117307456 -3950074 + RMER12 LTR ERVK 1185 1228 -94 3 1479 655 230 94 0 chr12 117307456 117307647 -3949883 - L1MA9 LINE L1 -375 5937 5729 3 1479 246 293 207 0 chr12 117307668 117307750 -3949780 + B4 SINE B4 194 292 0 4 1479 23 33 0 0 chr12 117307823 117307853 -3949677 + AT_rich Low_complexity Low_complexity 1 30 0 4 1479 303 283 0 48 chr12 117307913 117308017 -3949513 + GA-rich Low_complexity Low_complexity 6 104 0 4 1479 289 124 72 30 chr12 117308298 117308464 -3949066 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 1479 360 198 43 37 chr12 117308513 117308676 -3948854 + (CA)n Simple_repeat Simple_repeat 1 164 0 4 1479 207 310 29 23 chr12 117308653 117308828 -3948702 + (CATA)n Simple_repeat Simple_repeat 4 179 0 4 1479 298 233 42 42 chr12 117308781 117308947 -3948583 + (CA)n Simple_repeat Simple_repeat 1 166 0 4 1479 220 296 22 34 chr12 117308865 117309043 -3948487 + (CATA)n Simple_repeat Simple_repeat 3 178 0 4 1480 189 0 0 0 chr12 117310027 117310048 -3947482 + (TTGGGG)n Simple_repeat Simple_repeat 6 26 0 4 1480 216 0 0 0 chr12 117310224 117310248 -3947282 + (CATTT)n Simple_repeat Simple_repeat 1 24 0 4 1480 1420 84 11 0 chr12 117311069 117311260 -3946270 + B2_Mm1t SINE B2 1 193 0 4 1480 688 175 20 4 chr12 117311378 117311633 -3945897 + GA-rich Low_complexity Low_complexity 1 259 0 4 1480 340 339 61 30 chr12 117312517 117312648 -3944882 + ID_B1 SINE B4 84 218 -6 4 1480 868 276 80 0 chr12 117313057 117313332 -3944198 + MLT2B3 LTR ERVL 253 549 -5 4 1480 30 27 0 0 chr12 117313436 117313473 -3944057 + AT_rich Low_complexity Low_complexity 1 37 0 4 1480 198 0 0 0 chr12 117314406 117314428 -3943102 + (CTG)n Simple_repeat Simple_repeat 2 23 0 4 1480 486 0 0 0 chr12 117314705 117314759 -3942771 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1480 612 0 0 0 chr12 117316844 117316912 -3940618 + (TTC)n Simple_repeat Simple_repeat 2 69 0 4 1480 307 265 117 62 chr12 117319309 117319583 -3937947 - MER33 DNA MER1_type -28 296 8 4 1480 204 200 0 0 chr12 117319945 117319980 -3937550 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1480 424 293 188 0 chr12 117320021 117320202 -3937328 + B3 SINE B2 1 215 -1 4 1480 306 0 0 0 chr12 117321026 117321060 -3936470 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1480 251 333 38 25 chr12 117321459 117321616 -3935914 - LTR40b LTR ERVL -4 458 300 4 1480 252 0 0 0 chr12 117326351 117326379 -3931151 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1480 2337 153 38 10 chr12 117329791 117330187 -3927343 + MTB_Mm LTR MaLR 1 407 0 4 1480 1220 269 113 6 chr12 117330378 117330846 -3926684 + L1MA7 LINE L1 5773 6290 -1 4 1480 504 0 0 0 chr12 117336014 117336070 -3921460 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1480 363 263 260 23 chr12 117336733 117337033 -3920497 - Lx7 LINE L1 -21 7675 7305 4 1480 516 290 2 1 chr12 117337035 117337165 -3920365 + Lx7 LINE L1 6613 6743 -717 4 1480 23 33 0 0 chr12 117338541 117338571 -3918959 + AT_rich Low_complexity Low_complexity 1 30 0 4 1480 586 279 52 44 chr12 117340489 117340740 -3916790 + MER2 DNA MER2_type 90 342 -3 4 1480 2774 168 46 32 chr12 117340839 117341399 -3916131 - RLTR12A LTR ERVK 0 568 1 4 1480 1375 274 5 23 chr12 117342165 117342553 -3914977 - Lx9 LINE L1 -771 6873 6493 4 1480 5135 211 40 30 chr12 117342552 117343863 -3913667 + L1_Rod LINE L1 4493 5816 -31 4 1480 507 230 175 27 chr12 117343872 117344055 -3913475 - MTD LTR MaLR -209 210 1 4 1480 695 227 169 21 chr12 117344055 117344334 -3913196 - MTD-int LTR MaLR 0 1258 939 4 1480 4501 30 4 17 chr12 117344342 117344880 -3912650 + L1Md_F2 LINE L1 6052 6582 0 4 1480 8219 50 5 1 chr12 117344880 117346238 -3911292 + L1Md_F2 LINE L1 5294 6582 0 4 1480 1500 251 76 96 chr12 117346262 117346897 -3910633 - MTD-int LTR MaLR -325 933 312 4 1480 1091 199 78 26 chr12 117346905 117347174 -3910356 + Lx6 LINE L1 7152 7434 -26 4 1480 609 271 55 34 chr12 117347195 117347432 -3910098 - MTD-int LTR MaLR -1009 249 8 4 1480 976 259 238 0 chr12 117347439 117347775 -3909755 - MTD LTR MaLR 0 419 4 4 1480 299 321 30 30 chr12 117349182 117349346 -3908184 - MER31-int LTR ERV1 -399 4537 4374 4 1480 251 211 0 71 chr12 117349589 117349645 -3907885 - MER31-int LTR ERV1 -833 4103 4052 4 1480 676 201 38 11 chr12 117350212 117350398 -3907132 - MER31-int LTR ERV1 -2025 2911 2721 4 1480 266 224 79 0 chr12 117350478 117350554 -3906976 - MER34B-int LTR ERV1 -2471 2885 2804 4 1480 243 195 91 0 chr12 117350685 117350762 -3906768 + PB1D10 SINE Alu 10 93 -24 4 1480 829 168 19 73 chr12 117350861 117351066 -3906464 + B2_Mm2 SINE B2 2 195 0 4 1480 221 57 0 28 chr12 117351093 117351129 -3906401 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1480 255 263 131 84 chr12 117351604 117351878 -3905652 - MER31-int LTR ERV1 -3584 1352 1066 4 1480 344 238 24 0 chr12 117352690 117352774 -3904756 - MLT1A0 LTR MaLR -55 310 225 4 1480 250 232 136 78 chr12 117352852 117352955 -3904575 - MLT1A0 LTR MaLR -299 109 1 4 1480 258 248 65 65 chr12 117356506 117356614 -3900916 + Charlie5 DNA MER1_type 8 115 -2509 4 1480 225 312 0 13 chr12 117357442 117357520 -3900010 + (CATG)n Simple_repeat Simple_repeat 2 78 0 4 1480 1393 206 73 9 chr12 117358704 117359032 -3898498 + ORR1D2 LTR MaLR 1 367 0 4 1480 1198 168 232 28 chr12 117359082 117359276 -3898254 + ORR1C2 LTR MaLR 1 234 -150 4 1480 333 47 0 0 chr12 117359276 117359319 -3898211 + (CCTG)n Simple_repeat Simple_repeat 4 46 0 4 1480 1198 168 232 28 chr12 117359319 117359443 -3898087 + ORR1C2 LTR MaLR 235 383 -1 4 1480 1841 259 26 58 chr12 117359910 117360495 -3897035 - Lx8 LINE L1 0 7473 6908 4 1480 315 0 0 0 chr12 117360507 117360542 -3896988 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1480 522 0 0 0 chr12 117361041 117361099 -3896431 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1480 579 301 46 0 chr12 117361407 117361580 -3895950 + B3A SINE B2 1 181 -17 4 1480 470 114 13 0 chr12 117361598 117361677 -3895853 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 4 1480 612 101 0 0 chr12 117361767 117361856 -3895674 + (TC)n Simple_repeat Simple_repeat 1 89 0 4 1480 773 169 7 0 chr12 117361868 117362004 -3895526 - B1_Mus1 SINE Alu -6 142 6 4 1480 409 321 104 18 chr12 117362496 117362743 -3894787 - L1M4 LINE L1 -4904 1836 1568 4 1480 3350 52 7 2 chr12 117362743 117363148 -3894382 - MTB_Mm LTR MaLR 0 407 1 4 1480 409 321 104 18 chr12 117363148 117363227 -3894303 - L1M4 LINE L1 -5173 1567 1482 4 1480 1366 272 65 8 chr12 117363403 117363785 -3893745 + MTD LTR MaLR 1 404 -15 4 1480 1313 267 3 7 chr12 117363801 117364106 -3893424 + Lx8 LINE L1 6623 6926 -547 4 1480 780 271 126 27 chr12 117364189 117364451 -3893079 - B4A SINE B4 -4 288 1 4 1480 883 296 140 14 chr12 117364452 117365104 -3892426 - L1M4 LINE L1 -760 5386 4653 4 1480 625 287 91 14 chr12 117365277 117365496 -3892034 - RMER15 LTR ERVL -63 512 277 4 1480 255 274 199 16 chr12 117365670 117365992 -3891538 - L1M4 LINE L1 -5203 1443 1063 4 1480 1054 44 73 0 chr12 117365992 117366129 -3891401 - B1_Mm SINE Alu 0 147 1 4 1480 307 231 58 42 chr12 117366166 117366356 -3891174 - L1M4 LINE L1 -5426 1116 924 4 1480 268 272 50 34 chr12 117366435 117366575 -3890955 - B1F SINE Alu -8 141 1 4 1480 623 311 98 73 chr12 117366583 117367034 -3890496 - L1M4 LINE L1 -5587 955 494 4 1480 24 0 0 0 chr12 117367111 117367135 -3890395 + AT_rich Low_complexity Low_complexity 1 24 0 4 1480 738 273 119 50 chr12 117367514 117368019 -3889511 - Charlie5 DNA MER1_type -2066 558 19 4 1480 369 62 0 0 chr12 117371249 117371297 -3886233 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1480 215 217 19 19 chr12 117373151 117373259 -3884271 + (TA)n Simple_repeat Simple_repeat 2 109 0 4 1480 1364 159 207 54 chr12 117373716 117374069 -3883461 + MTD LTR MaLR 5 411 -8 4 1480 500 81 0 13 chr12 117374213 117374288 -3883242 + (GGA)n Simple_repeat Simple_repeat 2 75 0 4 1480 2322 95 52 6 chr12 117374893 117375012 -3882518 - Lx LINE L1 -2 6652 6535 4 1480 180 0 0 0 chr12 117375012 117375032 -3882498 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 4 1480 2322 95 52 6 chr12 117375032 117375261 -3882269 - Lx LINE L1 -120 6534 6289 4 1480 1639 173 34 106 chr12 117379388 117379557 -3877973 - MTC LTR MaLR -23 398 240 4 1480 485 58 0 14 chr12 117379557 117379627 -3877903 + (CTTG)n Simple_repeat Simple_repeat 2 70 0 4 1480 1639 173 34 106 chr12 117379627 117379685 -3877845 - MTC LTR MaLR -182 239 212 4 1480 869 78 75 37 chr12 117379685 117379819 -3877711 - B1_Mus2 SINE Alu -7 140 2 4 1480 1639 173 34 106 chr12 117379819 117379997 -3877533 - MTC LTR MaLR -210 211 21 4 1480 2441 96 9 0 chr12 117380049 117380373 -3877157 - ORR1A2 LTR MaLR 0 327 1 4 1480 198 348 49 14 chr12 117380618 117380761 -3876769 + MER5A DNA MER1_type 36 183 -6 4 1480 1030 131 11 69 chr12 117381659 117381847 -3875683 - B2_Mm2 SINE B2 -18 177 1 4 1480 486 0 0 0 chr12 117383807 117383861 -3873669 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1480 566 113 0 10 chr12 117384982 117385080 -3872450 + (TG)n Simple_repeat Simple_repeat 1 97 0 4 1480 495 0 0 0 chr12 117385313 117385368 -3872162 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1480 231 188 32 60 chr12 117386094 117386177 -3871353 - PB1 SINE Alu -35 82 1 4 1480 233 117 67 0 chr12 117387736 117387796 -3869734 + GA-rich Low_complexity Low_complexity 2 65 0 4 1480 2411 77 3 63 chr12 117387954 117388302 -3869228 - ORR1A2 LTR MaLR 0 327 1 4 1480 585 0 0 0 chr12 117390583 117390648 -3866882 + (CTG)n Simple_repeat Simple_repeat 3 67 0 4 1480 28 48 0 0 chr12 117391085 117391127 -3866403 + AT_rich Low_complexity Low_complexity 1 42 0 4 1480 21 36 0 0 chr12 117391247 117391275 -3866255 + AT_rich Low_complexity Low_complexity 1 28 0 4 1480 227 271 43 86 chr12 117392052 117392145 -3865385 + MLT1B LTR MaLR 43 131 -259 4 1480 437 261 160 24 chr12 117392145 117392432 -3865098 - L1M4 LINE L1 -1189 4957 4632 4 1480 299 282 102 24 chr12 117392568 117392735 -3864795 - L1M4 LINE L1 -3752 2388 2209 4 1480 28 29 0 0 chr12 117392808 117392843 -3864687 + AT_rich Low_complexity Low_complexity 1 35 0 4 1480 1230 284 191 5 chr12 117393120 117393538 -3863992 - Lx9 LINE L1 -740 6904 6409 4 1480 387 267 10 29 chr12 117393668 117393772 -3863758 - MLT1A LTR MaLR -250 124 23 4 1480 3218 40 5 50 chr12 117394450 117394869 -3862661 + MTB LTR MaLR 1 400 0 4 1480 225 287 187 15 chr12 117398358 117398556 -3858974 - MLT2C1 LTR ERVL -109 288 57 4 1480 1160 82 0 0 chr12 117398780 117398927 -3858603 - B1_Mus1 SINE Alu 0 148 2 4 1480 5232 200 109 9 chr12 117399284 117399444 -3858086 - Lx9 LINE L1 0 7644 7409 4 1480 531 112 0 0 chr12 117399444 117399524 -3858006 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 1480 5232 200 109 9 chr12 117399524 117400521 -3857009 - Lx9 LINE L1 -236 7408 6373 4 1480 822 246 108 13 chr12 117400870 117401101 -3856429 - B4 SINE B4 -38 254 2 4 1480 714 24 0 0 chr12 117401332 117401416 -3856114 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 1480 1062 195 96 132 chr12 117401512 117401920 -3855610 - RLTR9C LTR ERVK 0 393 1 4 1480 626 200 73 15 chr12 117402664 117402801 -3854729 + B1_Mur2 SINE Alu 5 149 0 5 1480 1410 186 11 77 chr12 117403412 117403791 -3853739 - RMER17C LTR ERVK -56 354 1 5 1480 456 19 0 0 chr12 117403804 117403857 -3853673 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1480 2428 96 16 0 chr12 117405210 117405532 -3851998 - ORR1A2 LTR MaLR 0 327 1 5 1480 285 98 0 0 chr12 117405605 117405646 -3851884 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1480 216 158 0 0 chr12 117405646 117405684 -3851846 + (CCA)n Simple_repeat Simple_repeat 1 38 0 5 1480 299 261 43 2 chr12 117406304 117406385 -3851145 + PB1D7 SINE Alu 37 127 0 5 1480 341 152 38 0 chr12 117406408 117406513 -3851017 + (CA)n Simple_repeat Simple_repeat 2 110 0 5 1480 555 178 17 0 chr12 117406526 117406700 -3850830 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1480 1374 270 46 68 chr12 117407455 117407952 -3849578 + RMER15-int LTR ERVL 4404 4889 -110 5 1480 486 180 19 39 chr12 117408679 117408783 -3848747 + ORR1B2 LTR MaLR 1 102 -276 5 1480 200 215 46 0 chr12 117408788 117408853 -3848677 + T-rich Low_complexity Low_complexity 5 72 0 5 1480 568 231 0 71 chr12 117408857 117408997 -3848533 - B1_Mur3 SINE Alu 0 149 20 5 1480 1380 181 7 22 chr12 117408962 117409233 -3848297 + ORR1B2 LTR MaLR 101 367 0 5 1480 531 0 0 0 chr12 117410823 117410882 -3846648 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1480 481 269 26 9 chr12 117410882 117410998 -3846532 - RSINE1 SINE B4 -40 125 8 5 1480 477 262 11 81 chr12 117411036 117411210 -3846320 - RSINE1 SINE B4 0 165 4 5 1480 2410 260 36 74 chr12 117411684 117411785 -3845745 + Lx9 LINE L1 6713 6821 -823 5 1480 994 9 0 0 chr12 117411785 117411892 -3845638 + U6 snRNA snRNA 1 107 0 5 1480 348 35 0 50 chr12 117411894 117411954 -3845576 + L1Md_F2 LINE L1 6525 6581 -1 5 1480 2410 260 36 74 chr12 117411954 117412659 -3844871 + Lx9 LINE L1 6822 7491 -153 5 1480 915 208 38 38 chr12 117412709 117412919 -3844611 + B3 SINE B2 4 213 -3 5 1480 924 256 95 13 chr12 117414020 117414337 -3843193 + MTEa LTR MaLR 35 377 -2 5 1480 1122 59 0 0 chr12 117415784 117415919 -3841611 + B1_Mus1 SINE Alu 5 139 -9 5 1480 191 36 0 35 chr12 117415919 117415948 -3841582 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1480 424 224 169 7 chr12 117416366 117416514 -3841016 - MTE2b LTR MaLR 0 379 208 5 1480 541 219 0 0 chr12 117416539 117416644 -3840886 - MTE2b LTR MaLR -254 125 21 5 1480 438 306 76 7 chr12 117416858 117417003 -3840527 - RSINE1 SINE B4 -7 158 4 5 1480 392 270 85 7 chr12 117417287 117417440 -3840090 - MLT1H LTR MaLR 0 549 385 5 1480 1647 185 5 60 chr12 117418827 117419230 -3838300 - RMER17C LTR ERVK 0 410 30 5 1480 213 213 0 0 chr12 117420343 117420390 -3837140 - B4A SINE B4 -245 47 1 5 1480 725 177 6 22 chr12 117421155 117421334 -3836196 + GA-rich Low_complexity Low_complexity 3 178 0 5 1480 722 113 0 8 chr12 117421337 117421471 -3836059 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 5 1480 2010 120 11 77 chr12 117422529 117422881 -3834649 + ORR1A4 LTR MaLR 1 329 0 5 1480 4259 171 45 19 chr12 117423714 117424541 -3832989 + Lx6 LINE L1 296 1143 -6585 5 1480 748 172 13 26 chr12 117424545 117424700 -3832830 - L1_Mur3 LINE L1 -7003 709 557 5 1480 2612 136 133 34 chr12 117424691 117425384 -3832146 + Lx6 LINE L1 1138 1899 -3981 5 1480 12347 148 29 130 chr12 117425362 117426001 -3831529 + Lx6 LINE L1 3235 3858 -2022 5 1480 1102 213 94 34 chr12 117426001 117426298 -3831232 - RLTR46 LTR ERVK -5 315 1 5 1480 12347 148 29 130 chr12 117426298 117426473 -3831057 + Lx6 LINE L1 3859 4031 -1849 5 1480 1196 62 7 0 chr12 117426473 117426619 -3830911 + B1_Mm SINE Alu 1 147 0 5 1480 186 43 0 0 chr12 117426621 117426644 -3830886 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1480 12347 148 29 130 chr12 117426644 117428057 -3829473 + Lx6 LINE L1 4032 5450 -430 5 1480 2398 92 3 12 chr12 117428057 117428397 -3829133 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1480 12347 206 31 110 chr12 117428397 117429033 -3828497 + Lx6 LINE L1 5451 6096 -1364 5 1480 973 58 21 14 chr12 117429033 117429174 -3828356 - B1_Mus1 SINE Alu -1 147 6 5 1480 12347 206 31 110 chr12 117429174 117430316 -3827214 + Lx6 LINE L1 6097 7258 -202 5 1480 6041 56 3 8 chr12 117430316 117431074 -3826456 - L1Md_F2 LINE L1 0 6582 5829 5 1480 6872 222 32 104 chr12 117431074 117431109 -3826421 + Lx6 LINE L1 7259 7291 -169 5 1480 285 128 0 0 chr12 117431113 117431160 -3826370 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 5 1480 384 273 50 38 chr12 117431216 117431376 -3826154 + Lx7 LINE L1 7205 7366 -330 5 1480 29 60 0 0 chr12 117431538 117431588 -3825942 + AT_rich Low_complexity Low_complexity 1 50 0 5 1480 2088 178 50 5 chr12 117432005 117432405 -3825125 + MTC LTR MaLR 2 419 -2 5 1480 286 204 0 0 chr12 117433893 117433942 -3823588 - URR1A DNA MER1_type -156 70 22 5 1480 936 98 76 0 chr12 117434129 117434261 -3823269 + B1_Mus1 SINE Alu 1 142 -6 5 1480 780 69 0 0 chr12 117434261 117434377 -3823153 + (GA)n Simple_repeat Simple_repeat 1 116 0 5 1480 1452 44 0 0 chr12 117434382 117434562 -3822968 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1480 1177 225 98 47 chr12 117436636 117437257 -3820273 + L1M2 LINE L1 4977 5607 -684 5 1480 792 148 66 7 chr12 117439045 117439181 -3818349 - B1_Mus1 SINE Alu 0 148 5 5 1480 299 156 0 43 chr12 117439817 117439911 -3817619 + A-rich Low_complexity Low_complexity 1 90 0 5 1480 356 292 204 51 chr12 117439912 117440049 -3817481 + RSINE1 SINE B4 2 159 -6 5 2 1638 241 61 13 chr12 117440188 117440583 -3816947 - Lx8 LINE L1 -155 7318 6905 5 1481 387 0 0 0 chr12 117440807 117440850 -3816680 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1481 218 174 43 0 chr12 117441716 117441762 -3815768 + (CCCTAA)n Simple_repeat Simple_repeat 1 48 0 5 1481 607 320 75 47 chr12 117442165 117442237 -3815293 - MTEb LTR MaLR -45 334 263 5 1481 413 115 13 0 chr12 117442237 117442315 -3815215 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 1481 607 320 75 47 chr12 117442315 117442563 -3814967 - MTEb LTR MaLR -117 262 5 5 1481 3219 49 2 38 chr12 117443733 117444159 -3813371 + L1_Mus1 LINE L1 6157 6567 0 5 1481 331 171 0 134 chr12 117445256 117445405 -3812125 + (CCCTAG)n Simple_repeat Simple_repeat 2 130 0 5 1481 1211 54 0 0 chr12 117446382 117446530 -3811000 + B1_Mus1 SINE Alu 1 148 0 5 1481 207 0 0 0 chr12 117446530 117446553 -3810977 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1481 270 259 13 70 chr12 117447195 117447318 -3810212 - B1F SINE Alu -15 112 3 5 1481 211 348 0 0 chr12 117447261 117447330 -3810200 - B4A SINE B4 -148 144 76 5 1481 545 248 47 0 chr12 117447343 117447472 -3810058 - B1F SINE Alu -5 144 10 5 1481 437 312 21 21 chr12 117447472 117447485 -3810045 - ID_B1 SINE B4 -3 219 78 5 1481 7070 193 70 45 chr12 117447627 117449096 -3808434 + Lx7 LINE L1 6068 7538 -158 5 1481 339 25 0 0 chr12 117449096 117449136 -3808394 + (TTA)n Simple_repeat Simple_repeat 2 41 0 5 1481 7070 201 71 43 chr12 117449136 117449263 -3808267 + Lx7 LINE L1 7539 7691 -5 5 1481 419 285 80 40 chr12 117449425 117449575 -3807955 + RSINE1 SINE B4 4 159 -6 5 1481 822 175 26 0 chr12 117450570 117450724 -3806806 + Lx4A LINE L1 6901 7058 0 5 1481 24 0 0 0 chr12 117450724 117450748 -3806782 + AT_rich Low_complexity Low_complexity 1 24 0 5 1481 24 32 0 0 chr12 117451106 117451137 -3806393 + AT_rich Low_complexity Low_complexity 1 31 0 5 1481 319 234 47 70 chr12 117451390 117451520 -3806010 + MLT1A1 LTR MaLR 2 131 -243 5 1481 1207 184 37 25 chr12 117453580 117453888 -3803642 - ORR1C2 LTR MaLR -1 383 1 5 1481 1541 91 17 4 chr12 117454451 117454684 -3802846 + L1_Mus3 LINE L1 6403 6638 0 5 1481 1224 54 0 13 chr12 117454686 117454836 -3802694 + B1_Mus1 SINE Alu 1 148 0 5 1481 232 276 155 0 chr12 117458457 117458573 -3798957 + MER2 DNA MER2_type 30 163 -182 5 1481 776 301 89 36 chr12 117458881 117459239 -3798291 + MTE2a LTR MaLR 1 377 -2 5 1481 251 237 141 20 chr12 117459393 117459492 -3798038 + MER106B DNA MER1_type 875 985 -74 5 1481 601 287 65 96 chr12 117459569 117459943 -3797587 + L1MC1 LINE L1 5285 5643 -690 5 1481 497 253 129 172 chr12 117459943 117460339 -3797191 - MTE2b LTR MaLR 0 379 1 5 1481 601 287 65 96 chr12 117460339 117460411 -3797119 + L1MC1 LINE L1 5644 5717 -616 5 1481 1019 113 7 0 chr12 117460429 117460570 -3796960 + B1_Mus1 SINE Alu 1 142 -6 5 1481 723 122 0 0 chr12 117460572 117460651 -3796879 + (GGA)n Simple_repeat Simple_repeat 3 81 0 5 1481 1536 22 0 0 chr12 117460651 117460831 -3796699 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1481 723 122 0 0 chr12 117460831 117460866 -3796664 + (GGA)n Simple_repeat Simple_repeat 1 35 0 5 1481 31 26 0 0 chr12 117460894 117460932 -3796598 + AT_rich Low_complexity Low_complexity 1 38 0 5 1481 344 289 75 40 chr12 117460932 117461105 -3796425 + L1MC1 LINE L1 5814 5992 -341 5 1481 1226 103 43 0 chr12 117461239 117461423 -3796107 + B2_Mm2 SINE B2 4 195 0 5 1481 285 211 28 0 chr12 117461510 117461581 -3795949 + L1MD LINE L1 5099 5171 -975 5 1481 346 229 0 46 chr12 117461676 117461763 -3795767 + ID4_ SINE ID 1 83 0 5 1481 291 333 22 78 chr12 117461763 117461855 -3795675 + B4A SINE B4 1 169 -123 5 1481 315 263 20 50 chr12 117461788 117461888 -3795642 + PB1D10 SINE Alu 17 113 -4 5 1481 275 317 60 26 chr12 117461888 117461920 -3795610 + L1MD LINE L1 5281 5309 -2686 5 1481 1024 123 56 50 chr12 117461920 117462099 -3795431 + B2_Mm2 SINE B2 2 181 -14 5 1481 401 301 62 6 chr12 117462099 117462299 -3795231 + L1MD LINE L1 5310 5520 -2475 5 1481 283 288 0 0 chr12 117462824 117462890 -3794640 - B4A SINE B4 -12 280 215 5 1481 236 105 0 26 chr12 117462939 117462977 -3794553 - B4 SINE B4 -68 224 188 5 1481 1275 157 0 0 chr12 117462977 117463187 -3794343 - URR1A DNA MER1_type 0 226 17 5 1481 551 179 33 79 chr12 117463927 117464079 -3793451 + ID_B1 SINE B4 79 223 -1 5 1481 260 358 0 0 chr12 117464749 117464830 -3792700 - ID SINE ID -143 81 1 5 1481 319 365 36 60 chr12 117465472 117465638 -3791892 - RSINE1 SINE B4 0 165 4 5 1481 734 0 12 0 chr12 117465672 117465758 -3791772 + (TC)n Simple_repeat Simple_repeat 1 87 0 5 1481 186 143 0 0 chr12 117465792 117465827 -3791703 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 5 1481 590 253 52 0 chr12 117465845 117465999 -3791531 - RSINE1 SINE B4 0 165 4 5 1481 871 49 0 0 chr12 117466893 117466995 -3790535 + L1Md_A LINE L1 6330 6431 -151 5 1481 591 255 0 26 chr12 117467413 117467561 -3789969 + B1_Mur3 SINE Alu 1 145 -4 5 1481 629 25 0 12 chr12 117467561 117467641 -3789889 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 6 1481 886 191 99 16 chr12 117468207 117468399 -3789131 + B3 SINE B2 5 212 -4 6 1481 267 250 57 19 chr12 117469325 117469431 -3788099 + RMER5 LTR ERV1 57 166 -368 6 1481 630 264 116 16 chr12 117469444 117469702 -3787828 + RMER5 LTR ERV1 251 534 0 6 1481 29 0 0 0 chr12 117470585 117470614 -3786916 + AT_rich Low_complexity Low_complexity 1 29 0 6 1481 689 246 78 52 chr12 117471310 117471560 -3785970 + MTE2a LTR MaLR 70 309 -70 6 1481 23 0 0 0 chr12 117472031 117472054 -3785476 + AT_rich Low_complexity Low_complexity 1 23 0 6 1481 233 371 0 0 chr12 117472056 117472126 -3785404 + ID4 SINE ID 1 70 -13 6 1481 304 232 50 20 chr12 117473065 117473166 -3784364 - L1MEg LINE L1 -1410 4736 4633 6 1481 613 361 37 123 chr12 117473840 117474211 -3783319 + MLT2B5 LTR ERVL 92 468 -249 6 1481 1169 61 0 26 chr12 117474211 117474362 -3783168 + B1_Mm SINE Alu 1 147 0 6 1481 613 361 37 123 chr12 117474362 117474581 -3782949 + MLT2B5 LTR ERVL 469 631 -86 6 1481 327 113 0 0 chr12 117474604 117474657 -3782873 + (CATA)n Simple_repeat Simple_repeat 2 54 0 6 1481 300 292 175 14 chr12 117474903 117475188 -3782342 - L1MEg LINE L1 -2708 3438 3108 6 1481 857 198 27 21 chr12 117475439 117475625 -3781905 + B2_Mm2 SINE B2 4 190 -5 6 1481 210 171 0 0 chr12 117475634 117475675 -3781855 + GA-rich Low_complexity Low_complexity 2 42 0 6 1481 387 233 34 17 chr12 117475696 117475814 -3781716 - L1MEg LINE L1 -3238 2908 2789 6 1481 203 75 0 70 chr12 117475920 117475935 -3781595 + (A)n Simple_repeat Simple_repeat 1 13 0 6 1481 1255 40 0 0 chr12 117475935 117476083 -3781447 + B1_Mus1 SINE Alu 1 148 0 6 1481 203 75 0 70 chr12 117476083 117476110 -3781420 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1481 676 258 83 36 chr12 117476121 117476314 -3781216 + B3 SINE B2 2 203 -13 6 1481 378 195 0 0 chr12 117476314 117476391 -3781139 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 1481 451 284 167 67 chr12 117476617 117477580 -3779950 - L1MEg LINE L1 -3789 2357 1311 6 1481 1052 109 0 39 chr12 117477580 117477733 -3779797 - B1_Mus2 SINE Alu 0 147 1 6 1481 451 289 165 75 chr12 117477733 117478518 -3779012 - L1MEg LINE L1 -4932 1310 439 6 1481 394 343 15 2 chr12 117479530 117479660 -3777870 + MTE-int LTR MaLR 799 1012 -723 6 1481 250 292 31 0 chr12 117479894 117479959 -3777571 + ID4_ SINE ID 3 69 -14 6 1481 222 304 0 0 chr12 117480052 117480108 -3777422 + ID4 SINE ID 14 69 -14 6 1481 624 328 109 42 chr12 117480471 117480828 -3776702 + Tigger7 DNA MER2_type 12 392 -2099 6 1481 435 319 25 0 chr12 117480831 117480988 -3776542 + RSINE1 SINE B4 3 163 -2 6 1481 339 85 0 0 chr12 117480993 117481040 -3776490 + (CATA)n Simple_repeat Simple_repeat 4 50 0 6 1481 482 227 242 18 chr12 117481053 117481318 -3776212 + Tigger7 DNA MER2_type 380 704 -1787 6 1481 698 239 42 30 chr12 117481309 117481477 -3776053 + B3 SINE B2 47 216 0 6 1481 414 241 46 0 chr12 117481511 117481619 -3775911 + Tigger7 DNA MER2_type 844 956 -1535 6 1481 441 339 111 20 chr12 117481625 117481923 -3775607 + Tigger7 DNA MER2_type 2124 2448 -43 6 1481 180 183 317 0 chr12 117482909 117482991 -3774539 - MIR SINE MIR -57 205 98 6 1481 927 292 60 65 chr12 117483057 117483460 -3774070 + MTD LTR MaLR 5 405 -14 6 1481 21 95 0 0 chr12 117485792 117485855 -3771675 + AT_rich Low_complexity Low_complexity 1 63 0 6 1481 327 348 8 0 chr12 117485856 117485974 -3771556 + PB1 SINE Alu 1 119 -8 6 1481 265 304 95 82 chr12 117486076 117486234 -3771296 + MTEa LTR MaLR 1 160 -219 6 1481 1103 90 0 0 chr12 117491721 117491866 -3765664 + B1_Mus2 SINE Alu 3 147 0 6 1481 202 182 0 0 chr12 117491867 117491900 -3765630 + polypurine Low_complexity Low_complexity 2 34 0 6 1481 1600 202 87 13 chr12 117491958 117492056 -3765474 + MTC LTR MaLR 1 99 -322 6 1481 2406 60 6 3 chr12 117492056 117492371 -3765159 + L1_Mus2 LINE L1 6251 6566 0 6 1481 1600 202 87 13 chr12 117492371 117492664 -3764866 + MTC LTR MaLR 100 421 0 6 1481 330 319 0 57 chr12 117492664 117492787 -3764743 + L1MA5 LINE L1 6184 6299 -1 6 1481 279 288 87 89 chr12 117493849 117494083 -3763447 + RSINE1 SINE B4 67 292 0 6 1481 384 214 0 0 chr12 117494084 117494196 -3763334 + (CA)n Simple_repeat Simple_repeat 1 112 0 6 1481 203 319 14 35 chr12 117494403 117494546 -3762984 + (TCTCTG)n Simple_repeat Simple_repeat 3 142 0 6 1481 840 169 29 0 chr12 117495142 117495278 -3762252 + B1_Mur1 SINE Alu 3 142 -7 6 1481 357 237 8 35 chr12 117495284 117495396 -3762134 + PB1D7 SINE Alu 1 112 -8 6 1481 1340 88 11 5 chr12 117495407 117495591 -3761939 + B2_Mm1t SINE B2 2 186 -7 6 1481 317 293 121 0 chr12 117495979 117496078 -3761452 + PB1 SINE Alu 1 111 -16 6 1481 276 312 45 9 chr12 117496208 117496318 -3761212 + PB1D7 SINE Alu 2 115 -5 6 1481 706 245 14 70 chr12 117496502 117496717 -3760813 + B3 SINE B2 2 204 -12 6 1481 386 289 101 52 chr12 117496960 117497248 -3760282 + MLT1G3 LTR MaLR 292 593 -2 6 1481 215 255 0 0 chr12 117497343 117497394 -3760136 + ID2 SINE ID 1 51 -32 6 1481 437 170 64 0 chr12 117497418 117497512 -3760018 + B1_Mus2 SINE Alu 48 147 0 6 1481 4441 224 48 43 chr12 117497926 117499609 -3757921 + L1_Mur3 LINE L1 720 2407 -3473 6 1481 1515 160 62 35 chr12 117499624 117499994 -3757536 + RMER17C LTR ERVK 2 381 -29 6 1481 3451 203 65 70 chr12 117500025 117501026 -3756504 + L1_Mur3 LINE L1 2409 3404 -2476 1 1481 373 266 20 41 chr12 117501737 117501835 -3755695 + B1_Mur2 SINE Alu 2 97 -52 2 1481 556 287 22 0 chr12 117502166 117502302 -3755228 - B4A SINE B4 -153 139 1 3 1481 324 242 152 0 chr12 117502434 117502533 -3754997 - MER33 DNA MER1_type -209 115 2 4 1481 441 0 0 0 chr12 117504700 117504749 -3752781 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 5 1481 1108 86 0 13 chr12 117506255 117506408 -3751122 + B2_Mm2 SINE B2 2 152 -43 6 1481 180 0 0 0 chr12 117506411 117506431 -3751099 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1481 716 42 21 0 chr12 117506444 117506539 -3750991 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 8 1481 1129 84 14 0 chr12 117506563 117506706 -3750824 + B1_Mus1 SINE Alu 3 147 -1 9 1481 242 116 0 23 chr12 117506723 117506767 -3750763 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 1 1481 1587 52 15 25 chr12 117507065 117507262 -3750268 - B2_Mm2 SINE B2 0 195 1 1 1481 1609 184 65 12 chr12 117507311 117507635 -3749895 - ORR1C2 LTR MaLR -11 373 33 1 1481 1022 256 101 119 chr12 117508064 117508450 -3749080 - MTE2b LTR MaLR 0 379 1 1 1481 180 246 79 92 chr12 117509080 117509156 -3748374 + MIRb SINE MIR 25 99 -169 1 1481 2747 52 65 0 chr12 117509767 117510092 -3747438 + ORR1A1 LTR MaLR 1 346 0 1 1481 272 318 23 30 chr12 117510348 117510481 -3747049 + MER52-int LTR ERV1 5671 5802 -1289 1 1481 1244 68 0 0 chr12 117510601 117510748 -3746782 - B1_Mm SINE Alu 0 147 1 1 1481 2539 95 3 0 chr12 117511104 117511429 -3746101 + ORR1A2 LTR MaLR 2 327 0 1 1481 5014 222 48 50 chr12 117511614 117511891 -3745639 - MTC-int LTR MaLR -64 1306 1047 1 1481 3360 61 13 0 chr12 117511891 117512286 -3745244 + MTB LTR MaLR 1 400 0 2 1481 5014 222 48 50 chr12 117512286 117512746 -3744784 - MTC-int LTR MaLR -324 1046 579 1 1481 602 100 10 0 chr12 117512746 117512846 -3744684 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1481 5014 222 48 50 chr12 117512846 117513413 -3744117 - MTC-int LTR MaLR -792 578 4 1 1481 1862 158 135 27 chr12 117513420 117513684 -3743846 - MTC LTR MaLR -10 411 106 1 1481 1028 89 7 36 chr12 117513684 117513823 -3743707 + B1_Mus1 SINE Alu 1 135 -13 2 1481 486 0 0 0 chr12 117513824 117513878 -3743652 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 2 1481 1401 56 0 0 chr12 117513878 117514056 -3743474 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 1481 1862 158 135 27 chr12 117514056 117514159 -3743371 - MTC LTR MaLR -316 105 2 1 1481 660 176 69 0 chr12 117514159 117514288 -3743242 + ORR1D1-int LTR MaLR 1229 1366 -4 2 1481 379 224 136 48 chr12 117514298 117514401 -3743129 + ORR1D1 LTR MaLR 7 118 -256 2 1481 540 0 0 0 chr12 117514819 117514879 -3742651 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1481 787 219 168 5 chr12 117514879 117515099 -3742431 + ORR1D1 LTR MaLR 119 374 0 2 1481 1265 61 0 0 chr12 117516277 117516424 -3741106 - B1_Mus2 SINE Alu 0 147 1 2 1481 513 0 0 0 chr12 117516450 117516507 -3741023 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1481 2054 99 49 3 chr12 117516754 117517059 -3740471 + ORR1A2 LTR MaLR 1 319 -8 2 1481 535 185 0 0 chr12 117517401 117517493 -3740037 - B3A SINE B2 -104 94 3 3 1481 2105 156 35 8 chr12 117517666 117518034 -3739496 + ORR1C1 LTR MaLR 1 378 0 3 1481 182 65 0 61 chr12 117518159 117518192 -3739338 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 1481 640 227 135 50 chr12 117518204 117518464 -3739066 - RMER5 LTR ERV1 -172 362 81 3 1481 279 0 0 0 chr12 117518518 117518549 -3738981 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1481 414 299 149 0 chr12 117518550 117518684 -3738846 - B3A SINE B2 -44 154 1 3 1481 241 241 0 36 chr12 117518709 117518765 -3738765 + T-rich Low_complexity Low_complexity 4 57 0 3 1481 216 0 0 0 chr12 117518846 117518870 -3738660 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1481 262 237 76 38 chr12 117521994 117522073 -3735457 - ID4 SINE ID -1 82 1 3 1481 246 32 0 0 chr12 117522673 117522704 -3734826 + (TTG)n Simple_repeat Simple_repeat 3 33 0 3 1481 1227 61 7 0 chr12 117524030 117524177 -3733353 - B1_Mus1 SINE Alu 0 148 1 4 1481 5181 105 38 27 chr12 117524277 117524440 -3733090 + Lx2B LINE L1 6217 6371 -629 4 1481 1009 63 103 0 chr12 117524440 117524566 -3732964 + B1_Mus1 SINE Alu 1 139 -9 4 1481 207 0 0 0 chr12 117524566 117524589 -3732941 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1481 5181 105 38 27 chr12 117524589 117525084 -3732446 + Lx2B LINE L1 6372 6884 -116 4 1481 225 0 0 0 chr12 117525084 117525109 -3732421 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 4 1481 5181 105 38 27 chr12 117525109 117525214 -3732316 + Lx2B LINE L1 6885 6988 -12 4 1481 872 181 0 14 chr12 117525396 117525542 -3731988 + B1_Mus1 SINE Alu 5 148 0 4 1481 656 168 0 0 chr12 117526063 117526164 -3731366 - B3 SINE B2 -114 102 2 4 1481 763 223 34 72 chr12 117526316 117526356 -3731174 - B3 SINE B2 0 216 182 4 1481 230 0 0 32 chr12 117526356 117526387 -3731143 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1481 1203 52 0 0 chr12 117526387 117526522 -3731008 - B1_Mus1 SINE Alu -13 135 1 4 1481 763 223 34 72 chr12 117526522 117526688 -3730842 - B3 SINE B2 -35 181 18 4 1481 2325 171 60 12 chr12 117526850 117527252 -3730278 - MTC LTR MaLR 0 421 1 5 1481 1071 221 58 204 chr12 117527262 117527712 -3729818 - ORR1C2 LTR MaLR 0 384 1 5 1481 180 0 0 0 chr12 117527867 117527887 -3729643 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1481 300 205 175 25 chr12 117527905 117527985 -3729545 - B1F1 SINE Alu -54 95 4 5 1481 503 238 95 72 chr12 117528086 117528157 -3729373 - L1MA8 LINE L1 -61 6230 6165 5 1481 3295 49 25 8 chr12 117528157 117528550 -3728980 - MTB LTR MaLR 0 400 1 5 1481 503 238 95 72 chr12 117528550 117528700 -3728830 - L1MA8 LINE L1 -127 6164 6004 5 1481 916 235 92 0 chr12 117528776 117528972 -3728558 - ID_B1 SINE B4 -9 215 2 5 1481 264 91 0 0 chr12 117528978 117529022 -3728508 + (TTAG)n Simple_repeat Simple_repeat 3 46 0 5 1481 1172 58 0 21 chr12 117529022 117529163 -3728367 - B1_Mus2 SINE Alu -8 139 2 5 1481 1014 234 24 0 chr12 117529211 117529416 -3728114 + B3 SINE B2 1 210 -6 5 1481 236 235 0 0 chr12 117529653 117529704 -3727826 + (TTCG)n Simple_repeat Simple_repeat 2 52 0 6 1481 497 275 28 21 chr12 117529782 117529927 -3727603 - B1F SINE Alu 0 149 4 6 1481 1266 54 0 0 chr12 117530189 117530336 -3727194 - B1_Mm SINE Alu 0 147 1 6 1481 394 272 0 12 chr12 117530375 117530457 -3727073 - ID4 SINE ID -1 82 2 6 1481 228 222 22 0 chr12 117530491 117530536 -3726994 - B1F1 SINE Alu -39 110 65 6 1481 555 118 0 0 chr12 117530581 117530666 -3726864 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 1481 288 277 0 15 chr12 117530849 117530915 -3726615 - B4A SINE B4 -145 147 83 6 1481 807 142 158 0 chr12 117530915 117531042 -3726488 - B1_Mus1 SINE Alu 0 148 2 6 1481 662 332 86 22 chr12 117531408 117531815 -3725715 - RMER5 LTR ERV1 -85 449 17 6 1481 1037 214 71 10 chr12 117532187 117532385 -3725145 + B3 SINE B2 1 210 -6 6 1481 1143 41 13 58 chr12 117532946 117533101 -3724429 + B1_Mus1 SINE Alu 1 148 0 7 1481 426 20 0 0 chr12 117533411 117533462 -3724068 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 7 1481 234 267 0 39 chr12 117533676 117533754 -3723776 - L1MB5 LINE L1 -232 5942 5868 7 1481 456 268 171 55 chr12 117533785 117533931 -3723599 - RSINE1 SINE B4 0 165 3 7 1481 515 244 121 8 chr12 117533946 117534078 -3723452 - B1_Mus1 SINE Alu -1 147 1 7 1481 37 33 0 16 chr12 117534083 117534111 -3723419 + AT_rich Low_complexity Low_complexity 1 28 0 7 1481 1045 239 5 14 chr12 117534111 117534327 -3723203 + B3 SINE B2 3 216 0 7 1481 37 33 0 16 chr12 117534327 117534360 -3723170 + AT_rich Low_complexity Low_complexity 1 33 0 7 1481 749 309 104 27 chr12 117534434 117534800 -3722730 - Lx8 LINE L1 -121 7352 6959 7 1481 186 71 0 0 chr12 117534801 117534829 -3722701 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 7 1481 500 252 124 16 chr12 117534839 117535044 -3722486 - Lx8 LINE L1 -596 6877 6639 7 1481 291 146 0 0 chr12 117535049 117535104 -3722426 + (TCTCCC)n Simple_repeat Simple_repeat 6 60 0 8 1481 4001 246 192 23 chr12 117535181 117535602 -3721928 - ORR1D1-int LTR MaLR -1 1508 1082 8 1481 3204 143 65 31 chr12 117535602 117535893 -3721637 + RLTR31_Mm LTR ERVK 1 318 -243 8 1481 1458 100 5 0 chr12 117535893 117536083 -3721447 - B2_Mm1t SINE B2 -1 192 2 8 1481 3204 143 65 31 chr12 117536083 117536331 -3721199 + RLTR31_Mm LTR ERVK 319 558 -3 8 1481 4001 246 192 23 chr12 117536331 117537147 -3720383 - ORR1D1-int LTR MaLR -428 1081 58 8 1481 1137 113 0 0 chr12 117537147 117537324 -3720206 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 8 1481 4001 246 192 23 chr12 117537324 117537364 -3720166 - ORR1D1-int LTR MaLR -1452 57 15 8 1481 1827 219 13 29 chr12 117537378 117537754 -3719776 - ORR1D1 LTR MaLR -4 370 1 8 1481 902 276 22 9 chr12 117537754 117537981 -3719549 - Lx8 LINE L1 -842 6631 6402 7 1481 621 229 151 0 chr12 117537979 117538145 -3719385 - Lx7 LINE L1 -1906 5790 5600 8 1481 1234 266 80 26 chr12 117538145 117538280 -3719250 + ORR1D2 LTR MaLR 1 148 -222 8 1481 1949 159 96 19 chr12 117538280 117538646 -3718884 - ORR1B1 LTR MaLR 0 394 1 8 1481 1234 266 80 26 chr12 117538646 117538861 -3718669 + ORR1D2 LTR MaLR 149 370 0 8 1481 2551 274 101 28 chr12 117538861 117539073 -3718457 - Lx7 LINE L1 -279 5601 5370 8 1481 2611 142 47 7 chr12 117539073 117539478 -3718052 + MTC LTR MaLR 1 421 0 8 1481 2551 274 101 28 chr12 117539478 117540265 -3717265 - Lx7 LINE L1 -511 5369 4530 8 1481 4959 146 52 65 chr12 117540268 117540567 -3716963 - Lx7 LINE L1 -2584 3296 3001 8 1481 180 0 0 0 chr12 117540567 117540587 -3716943 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 8 1481 4959 146 52 65 chr12 117540587 117541085 -3716445 - Lx7 LINE L1 -2880 3000 2511 8 1481 1619 29 0 0 chr12 117541085 117541259 -3716271 + B2_Mm1a SINE B2 1 174 -19 9 1481 4959 146 52 65 chr12 117541259 117541585 -3715945 - Lx7 LINE L1 -3370 2510 2189 8 1481 990 0 0 0 chr12 117541585 117541695 -3715835 + (TTCTC)n Simple_repeat Simple_repeat 4 113 0 9 1481 8443 45 33 9 chr12 117541696 117542925 -3714605 - L1Md_F2 LINE L1 -23 6559 5295 9 1481 2895 74 16 0 chr12 117542925 117543288 -3714242 - L1Md_F2 LINE L1 -12 6570 6202 9 1481 8443 54 1 36 chr12 117543288 117543349 -3714181 - L1Md_F2 LINE L1 -589 5294 5268 9 1481 602 36 24 0 chr12 117543349 117543432 -3714098 - L1Md_F3 LINE L1 -1 6583 6499 9 1481 8443 54 1 36 chr12 117543432 117543873 -3713657 - L1Md_F2 LINE L1 -616 5267 4826 9 1481 1722 237 124 16 chr12 117543886 117544529 -3713001 - Lx7 LINE L1 -3692 2188 1476 8 1481 395 194 97 0 chr12 117544531 117544624 -3712906 + Lx7 LINE L1 6978 7079 -617 9 1481 207 0 0 0 chr12 117545073 117545096 -3712434 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1481 432 99 0 0 chr12 117545096 117545167 -3712363 + (GA)n Simple_repeat Simple_repeat 2 72 0 9 1481 2111 179 55 39 chr12 117545526 117545961 -3711569 - RMER10A LTR ERVL 0 442 1 9 1481 365 153 118 0 chr12 117546087 117546169 -3711361 + ORR1D1 LTR MaLR 1 92 -282 9 1481 798 254 26 78 chr12 117546169 117546438 -3711092 - MT2B LTR ERVL 0 601 347 1 1481 294 341 112 18 chr12 117546646 117546870 -3710660 + L1MD2 LINE L1 5855 6099 -260 1 1481 284 397 85 0 chr12 117547017 117547158 -3710372 - MER21B LTR ERV1 -74 789 637 1 1481 206 111 0 53 chr12 117547854 117547892 -3709638 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1481 913 326 113 47 chr12 117547897 117548303 -3709227 - MER21B LTR ERV1 -303 560 125 1 1481 922 212 37 28 chr12 117548303 117548521 -3709009 - ORR1D1 LTR MaLR 0 374 155 1 1481 672 103 0 0 chr12 117548521 117548628 -3708902 + (GA)n Simple_repeat Simple_repeat 2 108 0 1 1481 780 218 74 34 chr12 117548655 117548831 -3708699 - ORR1D1 LTR MaLR -191 183 1 1 1481 267 293 53 0 chr12 117548869 117548944 -3708586 - MER21B LTR ERV1 -778 85 7 1 1481 906 163 22 0 chr12 117549126 117549261 -3708269 - B1_Mur2 SINE Alu -7 142 5 1 1481 805 195 44 65 chr12 117549269 117549484 -3708046 - B3 SINE B2 -9 186 1 1 1481 411 21 0 0 chr12 117549582 117549630 -3707900 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1481 209 161 0 0 chr12 117549631 117549662 -3707868 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1481 317 337 40 0 chr12 117550242 117550343 -3707187 + PB1D10 SINE Alu 1 105 -12 1 1481 23 54 0 0 chr12 117550946 117550983 -3706547 + AT_rich Low_complexity Low_complexity 1 37 0 1 1481 747 0 0 0 chr12 117551153 117551236 -3706294 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1481 1273 48 0 0 chr12 117551236 117551382 -3706148 - B1_Mus1 SINE Alu -2 146 1 1 1481 1738 294 130 41 chr12 117551509 117552261 -3705269 - MER21B LTR ERV1 -27 836 18 1 1481 380 212 112 26 chr12 117552293 117552409 -3705121 + B1_Mur4 SINE Alu 25 150 0 1 1481 245 284 211 0 chr12 117553272 117553367 -3704163 - PB1D10 SINE Alu -2 115 1 1 1481 314 265 0 0 chr12 117553511 117553594 -3703936 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1481 195 42 0 0 chr12 117555203 117555227 -3702303 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1481 1266 54 0 13 chr12 117555227 117555376 -3702154 - B1_Mus2 SINE Alu 0 147 1 1 1481 1620 49 0 11 chr12 117555826 117556013 -3701517 - B2_Mm1a SINE B2 -7 186 2 1 1481 697 241 14 91 chr12 117557691 117557901 -3699629 - B3A SINE B2 -3 195 2 1 1481 775 115 0 15 chr12 117557958 117558090 -3699440 + (TATG)n Simple_repeat Simple_repeat 2 131 0 1 1481 22 0 0 0 chr12 117558159 117558181 -3699349 + AT_rich Low_complexity Low_complexity 1 22 0 1 1481 306 206 0 0 chr12 117558494 117558567 -3698963 + CT-rich Low_complexity Low_complexity 4 76 0 1 1481 233 174 43 0 chr12 117558584 117558630 -3698900 - PB1D10 SINE Alu 0 117 70 1 1481 548 302 72 0 chr12 117558645 117558784 -3698746 + B3A SINE B2 3 151 -47 1 1481 25 0 0 0 chr12 117558800 117558825 -3698705 + AT_rich Low_complexity Low_complexity 1 25 0 1 1481 395 264 36 9 chr12 117558874 117558985 -3698545 - PB1D10 SINE Alu -3 114 1 1 1481 1388 70 0 31 chr12 117559025 117559217 -3698313 + B2_Mm2 SINE B2 3 188 -7 1 1481 193 356 156 0 chr12 117559378 117559513 -3698017 - MIRb SINE MIR -70 198 43 1 1481 1043 158 53 15 chr12 117559931 117560137 -3697393 + B3 SINE B2 3 216 0 1 1481 462 284 48 42 chr12 117560178 117560475 -3697055 + L1M4 LINE L1 3683 3968 -2172 1 1481 353 226 129 0 chr12 117560544 117560637 -3696893 + PB1D9 SINE Alu 1 105 -15 1 1481 264 239 144 8 chr12 117560647 117560765 -3696765 + L1M4 LINE L1 4251 4384 -1756 1 1481 478 274 65 30 chr12 117560804 117560973 -3696557 + B4 SINE B4 59 233 -59 1 1481 719 138 201 28 chr12 117561584 117561763 -3695767 - Lx4A LINE L1 -3 7055 6846 1 1481 288 301 258 11 chr12 117561954 117562132 -3695398 - ID_B1 SINE B4 0 224 3 1 1481 225 321 124 36 chr12 117563031 117563225 -3694305 - MIR SINE MIR -39 223 13 1 1481 1678 21 0 0 chr12 117563345 117563535 -3693995 - B2_Mm1a SINE B2 -1 192 3 1 1481 320 298 10 21 chr12 117563750 117563846 -3693684 - BC1_Mm scRNA scRNA -53 99 5 1 1481 1479 56 0 39 chr12 117565347 117565550 -3691980 - B2_Mm2 SINE B2 0 195 1 1 1481 429 70 0 0 chr12 117567077 117567134 -3690396 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1481 308 224 176 39 chr12 117567135 117567237 -3690293 - RSINE1 SINE B4 -9 156 41 1 1481 1172 198 163 21 chr12 117567699 117568025 -3689505 + ORR1D1 LTR MaLR 1 372 -2 1 1481 225 0 0 0 chr12 117568042 117568067 -3689463 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1481 1040 84 7 0 chr12 117568067 117568202 -3689328 - B1_Mus1 SINE Alu -11 137 2 1 1481 1688 270 14 0 chr12 117568335 117568705 -3688825 - MTE2b LTR MaLR -4 375 1 1 1481 31 44 0 0 chr12 117569891 117569936 -3687594 + AT_rich Low_complexity Low_complexity 1 45 0 1 1481 221 184 0 95 chr12 117570015 117570099 -3687431 + A-rich Low_complexity Low_complexity 2 77 0 1 1481 2133 265 101 21 chr12 117570157 117570951 -3686579 - Lx7 LINE L1 -462 7234 6378 1 1481 288 0 0 0 chr12 117571044 117571076 -3686454 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1481 734 188 23 0 chr12 117571076 117571204 -3686326 - B1_Mus2 SINE Alu -12 135 5 1 185 1161 75 0 0 chr12 117571464 117571610 -3685920 - B1_Mus2 SINE Alu -1 146 1 1 1482 237 337 0 34 chr12 117572135 117572224 -3685306 - B4 SINE B4 -205 87 2 1 1482 598 248 33 0 chr12 117572280 117572401 -3685129 + B1_Mm SINE Alu 2 126 -21 1 1482 25 0 0 0 chr12 117573527 117573552 -3683978 + AT_rich Low_complexity Low_complexity 1 25 0 1 1482 4101 218 102 18 chr12 117574429 117575567 -3681963 - Lx5 LINE L1 -5 7045 5812 1 1482 579 282 122 32 chr12 117575690 117575943 -3681587 + B4 SINE B4 1 276 -16 1 1482 224 226 16 31 chr12 117575966 117576030 -3681500 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1 1482 545 280 0 57 chr12 117576216 117576356 -3681174 + ID_B1 SINE B4 86 217 -7 1 1482 22 56 0 0 chr12 117576399 117576435 -3681095 + AT_rich Low_complexity Low_complexity 1 36 0 1 1482 198 103 0 0 chr12 117577932 117577961 -3679569 + (TATG)n Simple_repeat Simple_repeat 3 31 0 1 1482 26 0 0 0 chr12 117577964 117577990 -3679540 + AT_rich Low_complexity Low_complexity 1 26 0 1 1482 230 132 39 13 chr12 117578583 117578660 -3678870 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1482 1922 157 78 20 chr12 117578660 117579017 -3678513 - ORR1C1 LTR MaLR 0 378 1 1 1482 223 271 57 0 chr12 117579472 117579542 -3677988 + (CATG)n Simple_repeat Simple_repeat 3 76 0 1 1482 240 299 174 10 chr12 117580112 117580210 -3677320 + MIR SINE MIR 117 230 -32 1 1482 241 339 70 52 chr12 117581166 117581281 -3676249 - PB1D10 SINE Alu 0 117 1 1 1482 421 316 136 6 chr12 117582439 117582566 -3674964 + B3A SINE B2 8 157 -41 1 1482 305 24 24 0 chr12 117582566 117582608 -3674922 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1482 421 316 136 6 chr12 117582608 117582649 -3674881 + B3A SINE B2 158 197 -1 1 1482 247 108 0 0 chr12 117582695 117582732 -3674798 + URR1B DNA MER1_type 97 133 -92 1 1482 396 239 152 0 chr12 117582864 117582956 -3674574 + B3A SINE B2 8 113 -85 1 1482 673 144 27 0 chr12 117583024 117583135 -3674395 + URR1B DNA MER1_type 112 225 0 1 1482 738 91 0 0 chr12 117583194 117583315 -3674215 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 1 1482 678 93 82 18 chr12 117583315 117583425 -3674105 + B2_Mm2 SINE B2 75 191 -4 1 1482 523 268 108 92 chr12 117583434 117583619 -3673911 + B4 SINE B4 87 274 -18 1 1482 634 197 26 0 chr12 117584215 117584332 -3673198 + PB1D9 SINE Alu 1 120 0 1 1482 534 307 69 19 chr12 117584342 117584604 -3672926 + B4A SINE B4 3 277 -15 1 1482 457 268 7 60 chr12 117588039 117588190 -3669340 + RSINE1 SINE B4 4 146 -19 1 1482 218 262 0 103 chr12 117589633 117589654 -3667876 + ID_B1 SINE B4 81 141 -83 1 1482 226 255 0 0 chr12 117589654 117589701 -3667829 + PB1D10 SINE Alu 14 60 -57 1 1482 1199 55 0 7 chr12 117589940 117590088 -3667442 - B1_Mus2 SINE Alu 0 147 1 1 1482 990 84 0 0 chr12 117590111 117590253 -3667277 + (TTTC)n Simple_repeat Simple_repeat 4 145 0 1 1482 774 32 0 0 chr12 117590253 117590345 -3667185 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 1 1482 628 284 23 9 chr12 117590762 117590979 -3666551 - ID_B1 SINE B4 0 224 5 1 1482 1116 58 0 0 chr12 117592943 117593082 -3664448 - B1_Mus1 SINE Alu 0 148 10 1 1482 230 286 95 0 chr12 117593576 117593660 -3663870 - MIRb SINE MIR -58 210 119 1 1482 306 279 2 23 chr12 117595186 117595296 -3662234 + AluG_3 SINE Alu 22 215 -96 1 1482 207 0 0 0 chr12 117595307 117595330 -3662200 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1482 1797 124 201 23 chr12 117596571 117596585 -3660945 - MTC LTR MaLR 0 421 408 1 1482 189 0 0 0 chr12 117596585 117596606 -3660924 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1482 1797 124 201 23 chr12 117596606 117596945 -3660585 - MTC LTR MaLR -14 407 7 1 1482 7049 81 15 33 chr12 117597022 117597706 -3659824 - L1_Mus4 LINE L1 -1 6635 5968 1 1482 236 53 0 26 chr12 117597706 117597745 -3659785 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1482 1134 43 7 7 chr12 117597745 117597882 -3659648 - B1_Mus1 SINE Alu -5 143 6 1 1482 7049 111 16 20 chr12 117597882 117598637 -3658893 - L1_Mus4 LINE L1 -669 5967 5209 1 1482 4165 159 95 1 chr12 117598635 117599279 -3658251 + L1_Mur2 LINE L1 4230 4940 -937 1 1482 991 93 57 0 chr12 117599279 117599419 -3658111 + B1_Mus1 SINE Alu 1 148 0 1 1482 4165 159 95 1 chr12 117599419 117599672 -3657858 + L1_Mur2 LINE L1 4941 5210 -667 1 1482 1129 88 0 20 chr12 117599689 117599839 -3657691 - B1_Mus1 SINE Alu 0 148 2 1 1482 234 291 110 16 chr12 117599939 117600121 -3657409 - L1M5 LINE L1 -1356 4790 4592 1 1482 276 30 0 0 chr12 117600228 117600261 -3657269 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 1 1482 268 276 25 49 chr12 117600272 117600394 -3657136 - L1M5 LINE L1 -1656 4490 4372 1 1482 211 244 0 0 chr12 117600406 117600451 -3657079 - ID4 SINE ID -17 66 22 1 1482 195 42 0 0 chr12 117600506 117600530 -3657000 + (TATG)n Simple_repeat Simple_repeat 3 26 0 1 1482 180 0 0 0 chr12 117600530 117600549 -3656981 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1482 236 290 81 20 chr12 117600580 117600728 -3656802 - L1M5 LINE L1 -2412 3734 3578 1 1482 1011 192 61 0 chr12 117601199 117601397 -3656133 - B3 SINE B2 -6 210 1 2 1482 511 268 56 7 chr12 117601515 117601546 -3655984 + B4 SINE B4 55 92 -200 2 1482 934 81 58 7 chr12 117601546 117601683 -3655847 + B1_Mus2 SINE Alu 2 145 -2 2 1482 1842 101 39 42 chr12 117602441 117602752 -3654778 + Lx3C LINE L1 6667 6976 0 2 1482 241 203 169 0 chr12 117602845 117602904 -3654626 + RSINE1 SINE B4 3 71 -94 2 1482 180 0 0 0 chr12 117602914 117602934 -3654596 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 2 1482 234 0 0 0 chr12 117602950 117602976 -3654554 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1482 29 28 0 0 chr12 117603033 117603069 -3654461 + AT_rich Low_complexity Low_complexity 1 36 0 2 1482 372 273 0 0 chr12 117603078 117603155 -3654375 - ID4 SINE ID 0 83 7 2 1482 604 225 54 0 chr12 117603743 117603872 -3653658 - B1_Mur2 SINE Alu 0 149 14 2 1482 360 219 68 0 chr12 117606523 117606596 -3650934 - B1_Mus1 SINE Alu -66 82 5 2 1482 25 65 0 0 chr12 117606666 117606712 -3650818 + AT_rich Low_complexity Low_complexity 1 46 0 2 1482 358 267 19 29 chr12 117609478 117609582 -3647948 + PB1D10 SINE Alu 2 104 -13 2 1482 291 360 12 0 chr12 117611974 117612060 -3645470 - PB1D10 SINE Alu -30 87 1 2 1482 1185 48 0 0 chr12 117612207 117612352 -3645178 + B1_Mus2 SINE Alu 2 146 -1 2 1482 213 39 0 0 chr12 117612406 117612432 -3645098 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1482 209 263 99 59 chr12 117613076 117613177 -3644353 + L2c LINE L2 3281 3385 -2 2 1482 234 266 164 75 chr12 117613624 117613727 -3643803 + L1M4c LINE L1 239 351 -6191 2 1482 3067 112 166 14 chr12 117613727 117614234 -3643296 - RLTR31A_Mm LTR ERVK 0 584 1 2 1482 234 266 164 75 chr12 117614234 117614264 -3643266 + L1M4c LINE L1 352 384 -6158 2 1482 545 278 83 0 chr12 117615092 117615236 -3642294 + RSINE1 SINE B4 4 159 -6 2 1482 28 48 0 0 chr12 117615248 117615290 -3642240 + AT_rich Low_complexity Low_complexity 1 42 0 2 1482 494 280 38 8 chr12 117615310 117615443 -3642087 + ID_B1 SINE B4 88 224 0 2 1482 374 248 70 23 chr12 117615453 117615581 -3641949 + L1M4c LINE L1 1599 1732 -4914 2 1482 231 345 33 11 chr12 117615745 117615836 -3641694 - PB1D10 SINE Alu -22 95 3 2 1482 541 292 18 58 chr12 117615857 117616028 -3641502 - RSINE1 SINE B4 0 165 2 2 1482 23 33 0 0 chr12 117616117 117616147 -3641383 + AT_rich Low_complexity Low_complexity 1 30 0 2 1482 293 250 18 36 chr12 117616871 117616983 -3640547 + (CACAA)n Simple_repeat Simple_repeat 5 114 0 2 1482 253 250 0 0 chr12 117617633 117617693 -3639837 - RSINE1 SINE B4 -63 102 43 2 1482 834 262 229 7 chr12 117617698 117618262 -3639268 - L1MC LINE L1 -2321 3825 3144 2 1482 955 130 82 6 chr12 117618361 117618531 -3638999 + B2_Mm2 SINE B2 2 184 -11 2 1482 273 89 0 0 chr12 117619534 117619579 -3637951 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 2 1482 293 273 169 41 chr12 117620342 117620514 -3637016 + L1MA4 LINE L1 5782 5975 -325 2 1482 279 0 0 0 chr12 117620642 117620673 -3636857 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1482 288 0 0 0 chr12 117620673 117620704 -3636826 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 1482 423 0 0 0 chr12 117620704 117620750 -3636780 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1482 618 184 49 62 chr12 117620750 117620912 -3636618 - RMER12 LTR ERVK 0 1322 1163 2 1482 237 154 63 177 chr12 117621046 117621125 -3636405 - RMER12 LTR ERVK -241 1081 1012 2 1482 267 302 170 0 chr12 117621779 117621885 -3635645 + RSINE1 SINE B4 11 134 -31 2 1482 874 207 24 0 chr12 117621955 117622124 -3635406 + MERVL_2A-int LTR ERVL 18 190 -5571 2 1482 378 107 0 0 chr12 117622153 117622209 -3635321 + (T)n Simple_repeat Simple_repeat 1 56 0 2 1482 1260 34 0 0 chr12 117622211 117622358 -3635172 - B1_Mm SINE Alu 0 147 1 2 1482 2327 137 153 4 chr12 117622359 117622837 -3634693 + RMER4B LTR ERVK 22 570 -15 2 1482 899 155 12 6 chr12 117622850 117623012 -3634518 + MERVL_2A-int LTR ERVL 187 349 -5412 2 1482 469 36 0 0 chr12 117623012 117623067 -3634463 - L1Md_F2 LINE L1 -539 6043 5989 2 1482 4457 51 9 0 chr12 117623067 117623614 -3633916 + L1Md_F2 LINE L1 6031 6582 0 2 1482 2333 271 35 17 chr12 117623640 117624494 -3633036 + Lx5 LINE L1 6262 7050 0 2 1482 27808 166 42 6 chr12 117624584 117629306 -3628224 + MERVL_2A-int LTR ERVL 736 5628 -133 2 1482 284 247 0 27 chr12 117629306 117629381 -3628149 + ORR1A3-int LTR MaLR 567 639 -1324 2 1482 35 78 0 0 chr12 117629434 117629511 -3628019 + AT_rich Low_complexity Low_complexity 1 77 0 2 1482 1222 54 0 0 chr12 117629541 117629688 -3627842 - B1_Mm SINE Alu 0 147 1 2 1482 22 56 0 0 chr12 117629695 117629731 -3627799 + AT_rich Low_complexity Low_complexity 1 36 0 2 1482 1879 192 87 129 chr12 117630139 117630610 -3626920 - Lx5 LINE L1 -7 7043 6580 2 1482 1133 36 7 0 chr12 117630610 117630747 -3626783 + B1_Mm SINE Alu 1 138 -9 2 1482 1879 192 87 129 chr12 117630747 117630872 -3626658 - Lx5 LINE L1 -471 6579 6472 2 1482 877 273 53 91 chr12 117630916 117631107 -3626423 + MT2A LTR ERVL 2 189 -344 2 1482 3665 100 47 15 chr12 117631107 117631390 -3626140 - Lx2 LINE L1 -3 6994 6691 2 1482 405 0 0 0 chr12 117631390 117631435 -3626095 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1482 3665 100 47 15 chr12 117631435 117631700 -3625830 - Lx2 LINE L1 -307 6690 6429 2 1482 908 153 0 0 chr12 117631700 117631837 -3625693 - B1_Mur4 SINE Alu -13 137 1 2 1482 877 273 53 91 chr12 117631837 117632151 -3625379 + MT2A LTR ERVL 190 488 -45 2 1482 389 259 143 0 chr12 117632519 117632631 -3624899 + ID_B1 SINE B4 94 221 -3 2 1482 479 284 127 7 chr12 117633238 117633529 -3624001 - L1MB5 LINE L1 -123 6051 5726 2 1482 868 140 256 6 chr12 117634306 117634478 -3623052 + B3 SINE B2 1 215 -1 2 1482 2868 308 51 68 chr12 117635008 117635378 -3622152 + RMER15-int LTR ERVL 233 612 -4387 2 1482 1252 41 0 0 chr12 117635378 117635525 -3622005 + B1_Mm SINE Alu 1 147 0 2 1482 208 53 26 26 chr12 117635529 117635568 -3621962 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1482 2868 308 51 68 chr12 117635568 117636450 -3621080 + RMER15-int LTR ERVL 613 1468 -3531 2 1482 478 255 142 47 chr12 117636476 117636645 -3620885 - ID_B1 SINE B4 -34 190 6 2 1482 3877 218 25 24 chr12 117636645 117637602 -3619928 + RMER17B LTR ERVK 1 958 0 2 1482 270 291 0 0 chr12 117637954 117638009 -3619521 - RSINE1 SINE B4 -102 63 9 2 1482 1048 75 82 0 chr12 117638194 117638340 -3619190 - SRV_MM-int LTR ERVK -695 5472 5315 2 1482 17643 56 46 2 chr12 117638332 117640537 -3616993 - SRV_MM-int LTR ERVK -3321 2846 546 2 1482 594 228 66 62 chr12 117640784 117641027 -3616503 - RLTR5_Mm LTR ERV1 0 628 385 2 1482 6129 174 13 12 chr12 117641117 117642329 -3615201 - RLTR6-int LTR ERV1 -130 7648 6132 2 1482 3974 206 21 5 chr12 117642774 117643546 -3613984 - RLTR6-int LTR ERV1 -1954 5824 5041 2 1482 184 116 91 23 chr12 117645182 117645226 -3612304 - MER5A DNA MER1_type -99 90 44 2 1482 697 165 150 12 chr12 117646083 117646243 -3611287 - ORR1D2 LTR MaLR -6 364 183 2 1482 463 204 0 0 chr12 117646275 117646363 -3611167 - ORR1D2 LTR MaLR -282 88 1 2 1482 639 259 133 16 chr12 117647262 117647450 -3610080 + B4A SINE B4 2 211 -81 2 1482 422 302 93 65 chr12 117647917 117647973 -3609557 - Tigger9b DNA MER2_type -21 603 552 2 1482 361 250 16 97 chr12 117647973 117648097 -3609433 + PB1D7 SINE Alu 5 118 -2 2 1482 422 302 93 65 chr12 117648097 117648227 -3609303 - Tigger9b DNA MER2_type -73 551 409 2 1482 1446 96 302 20 chr12 117648227 117648482 -3609048 - ORR1A2 LTR MaLR 0 327 1 2 1482 422 302 93 65 chr12 117648482 117648542 -3608988 - Tigger9b DNA MER2_type -216 408 349 2 1482 206 225 0 0 chr12 117648572 117648612 -3608918 + GA-rich Low_complexity Low_complexity 1 40 0 2 1482 330 322 68 71 chr12 117648917 117649198 -3608332 - B4 SINE B4 -11 281 2 2 1482 316 268 51 102 chr12 117649639 117649776 -3607754 - L1MC4 LINE L1 -326 7716 7586 2 1482 339 296 140 19 chr12 117650003 117650311 -3607219 - L1MC4 LINE L1 -583 7299 6956 2 1482 775 170 21 7 chr12 117651112 117651254 -3606276 - B1_Mur1 SINE Alu -5 144 1 2 1482 25 31 0 0 chr12 117652304 117652336 -3605194 + AT_rich Low_complexity Low_complexity 1 32 0 2 1482 354 98 0 0 chr12 117652413 117652464 -3605066 + (TTA)n Simple_repeat Simple_repeat 3 53 0 2 1482 854 184 0 12 chr12 117652974 117653139 -3604391 - B2_Mm2 SINE B2 -31 164 2 2 1482 2437 141 73 11 chr12 117654038 117654477 -3603053 - RMER4A LTR ERVK 0 466 1 2 1482 216 93 45 23 chr12 117654487 117654531 -3602999 + T-rich Low_complexity Low_complexity 4 48 0 2 1482 313 130 0 0 chr12 117654625 117654671 -3602859 + PB1D9 SINE Alu 1 46 -74 2 1482 307 259 17 17 chr12 117654819 117654937 -3602593 + (TA)n Simple_repeat Simple_repeat 1 118 0 2 1482 180 0 0 0 chr12 117654989 117655009 -3602521 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1482 309 26 0 0 chr12 117655009 117655046 -3602484 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1482 955 195 43 0 chr12 117655057 117655242 -3602288 - MTD LTR MaLR -29 390 198 2 1482 745 219 0 14 chr12 117655374 117655522 -3602008 - B1_Mur1 SINE Alu -3 146 1 2 1482 859 214 4 97 chr12 117655522 117655670 -3601860 - MTD LTR MaLR -210 209 82 2 1482 1166 69 0 0 chr12 117655670 117655815 -3601715 - B1_Mus2 SINE Alu 0 147 3 2 1482 859 214 4 97 chr12 117655815 117655894 -3601636 - MTD LTR MaLR -338 81 3 2 1482 247 309 0 0 chr12 117655919 117655974 -3601556 - tRNA-Ala-GCY_ tRNA tRNA -11 64 10 2 1482 215 301 41 0 chr12 117655974 117655985 -3601545 - B4 SINE B4 -214 53 3 2 1482 21 57 0 0 chr12 117656368 117656403 -3601127 + AT_rich Low_complexity Low_complexity 1 35 0 2 1482 1936 73 7 39 chr12 117656554 117656839 -3600691 + L1_Mus3 LINE L1 6359 6634 -4 2 1482 384 212 129 0 chr12 117657583 117657668 -3599862 - PB1 SINE Alu -31 96 1 2 1482 194 174 22 0 chr12 117657847 117657893 -3599637 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1482 290 234 126 11 chr12 117657895 117657990 -3599540 - PB1D7 SINE Alu -10 110 5 2 1482 464 301 62 0 chr12 117658747 117658893 -3598637 - RSINE1 SINE B4 -7 158 4 2 1482 318 238 98 0 chr12 117659544 117659666 -3597864 + MER33 DNA MER1_type 191 324 0 2 1482 649 255 72 39 chr12 117660172 117660380 -3597150 - B3A SINE B2 -1 215 1 2 1482 180 0 0 0 chr12 117660389 117660409 -3597121 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2 1482 369 0 0 0 chr12 117660523 117660564 -3596966 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1482 270 0 0 0 chr12 117660564 117660594 -3596936 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1482 264 264 28 0 chr12 117660660 117660732 -3596798 - RSINE1 SINE B4 0 165 92 3 1482 261 0 0 0 chr12 117661263 117661292 -3596238 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 3 1482 236 362 0 33 chr12 117662138 117662258 -3595272 + PB1D10 SINE Alu 2 117 0 3 1482 28 0 0 0 chr12 117662706 117662734 -3594796 + AT_rich Low_complexity Low_complexity 1 28 0 3 1482 354 272 51 34 chr12 117663309 117663427 -3594103 - PB1 SINE Alu -7 120 1 3 1482 268 295 0 37 chr12 117663866 117663947 -3593583 - ID4_ SINE ID -3 80 3 3 1482 387 312 39 15 chr12 117664021 117664151 -3593379 - RSINE1 SINE B4 -31 134 2 3 1482 288 288 0 0 chr12 117664746 117664826 -3592704 + MER2 DNA MER2_type 96 175 -170 3 1482 28 29 0 0 chr12 117665390 117665425 -3592105 + AT_rich Low_complexity Low_complexity 1 35 0 3 1482 532 199 206 0 chr12 117665425 117665571 -3591959 - B3 SINE B2 -7 209 34 3 1482 453 279 42 49 chr12 117665563 117665706 -3591824 - B3A SINE B2 -56 142 1 3 1482 351 287 36 27 chr12 117665744 117665855 -3591675 + PB1D10 SINE Alu 1 112 -5 3 1482 999 123 0 7 chr12 117666502 117666649 -3590881 - B1_Mm SINE Alu 0 147 2 3 1482 600 248 38 32 chr12 117666676 117666834 -3590696 - RSINE1 SINE B4 -4 161 3 3 1482 294 143 0 0 chr12 117667062 117667111 -3590419 + (T)n Simple_repeat Simple_repeat 1 49 0 3 1482 768 302 39 0 chr12 117667381 117667586 -3589944 + ID_B1 SINE B4 4 216 -8 3 1482 2040 65 103 0 chr12 117669836 117670098 -3587432 - L1_Mus1 LINE L1 -3 6564 6276 3 1482 449 82 0 0 chr12 117670098 117670159 -3587371 - L1_Mus2 LINE L1 -230 6336 6276 3 1482 484 111 0 0 chr12 117670144 117670216 -3587314 - L1_Mus2 LINE L1 -215 6351 6280 3 1482 3638 122 7 32 chr12 117670286 117670877 -3586653 - RLTR19-int LTR ERVK -4133 2004 1429 3 1482 529 223 114 15 chr12 117671247 117671379 -3586151 - B1F1 SINE Alu 0 149 5 3 1482 465 244 0 0 chr12 117671421 117671507 -3586023 + B1_Mur3 SINE Alu 2 87 -62 3 1482 837 92 169 0 chr12 117671508 117671638 -3585892 + B2_Mm1t SINE B2 1 152 -41 3 1482 360 0 0 0 chr12 117671643 117671683 -3585847 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 3 1482 317 243 0 0 chr12 117671724 117671794 -3585736 + B1_Mur2 SINE Alu 79 148 -1 3 1482 1324 34 0 0 chr12 117673486 117673632 -3583898 - B1_Mus2 SINE Alu -1 146 1 3 1482 2075 260 42 10 chr12 117673732 117674237 -3583293 - Lx8 LINE L1 -236 7237 6717 3 1482 1629 291 81 16 chr12 117674679 117675238 -3582292 - Lx8 LINE L1 -840 6633 6039 3 1482 441 54 0 0 chr12 117675528 117675584 -3581946 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1482 842 306 12 21 chr12 117675596 117675836 -3581694 - B4A SINE B4 -53 239 2 3 1482 244 267 0 11 chr12 117676754 117676845 -3580685 + Lx7 LINE L1 7591 7680 -16 3 1482 1329 136 94 16 chr12 117680037 117680291 -3577239 - ORR1D1 LTR MaLR 0 374 101 3 1482 552 181 143 45 chr12 117682414 117682547 -3574983 - B1_Mm SINE Alu 0 147 2 3 1482 267 31 0 0 chr12 117682553 117682585 -3574945 + (TTA)n Simple_repeat Simple_repeat 2 33 0 3 1482 664 216 7 7 chr12 117682587 117682722 -3574808 - B1F SINE Alu -12 137 3 3 1482 646 287 69 5 chr12 117683308 117683497 -3574033 - B3 SINE B2 -15 201 1 3 1482 1007 216 48 10 chr12 117683932 117684138 -3573392 - B3 SINE B2 -1 215 2 3 1482 186 103 0 0 chr12 117684512 117684541 -3572989 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1482 1127 63 0 0 chr12 117684610 117684753 -3572777 + B1_Mus1 SINE Alu 6 148 0 3 1482 416 284 18 0 chr12 117684946 117685055 -3572475 - PB1D7 SINE Alu -9 111 1 3 1482 1404 143 41 18 chr12 117685114 117685334 -3572196 + URR1B DNA MER1_type 1 225 0 3 1482 900 156 14 28 chr12 117686422 117686558 -3570972 + B1_Mur4 SINE Alu 2 137 -13 3 1482 189 0 0 0 chr12 117686558 117686579 -3570951 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3 1482 1596 236 107 6 chr12 117686603 117686969 -3570561 - MTD LTR MaLR -14 405 3 3 1482 1701 240 188 43 chr12 117686975 117687935 -3569595 - MTD-int LTR MaLR -4 1254 1 3 1482 1811 231 38 50 chr12 117687936 117688360 -3569170 - MTD LTR MaLR 0 419 1 3 1482 270 333 0 0 chr12 117689230 117689305 -3568225 + CT-rich Low_complexity Low_complexity 3 77 0 3 1482 220 308 0 0 chr12 117689305 117689357 -3568173 - ID4 SINE ID -31 52 1 3 1482 358 233 32 32 chr12 117689359 117689452 -3568078 - ID_B1 SINE B4 -2 222 130 3 1482 264 247 96 0 chr12 117689396 117689469 -3568061 - RLTR25B LTR ERVK -521 507 428 3 1482 253 263 0 66 chr12 117689549 117689610 -3567920 + PB1 SINE Alu 3 59 -68 3 1482 24 32 0 0 chr12 117689640 117689671 -3567859 + AT_rich Low_complexity Low_complexity 1 31 0 3 1482 1173 58 0 0 chr12 117689681 117689818 -3567712 + B1_Mus2 SINE Alu 2 138 -9 3 1482 228 35 0 0 chr12 117689818 117689847 -3567683 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1482 1610 170 131 15 chr12 117690944 117691279 -3566251 + ORR1D1 LTR MaLR 1 374 0 3 1482 486 246 13 53 chr12 117691507 117691657 -3565873 - RLTR14 LTR ERV1 -15 367 224 3 1482 2837 262 89 172 chr12 117691755 117691840 -3565690 - L1_Mur3 LINE L1 -1412 4468 4365 3 1482 183 42 0 0 chr12 117691840 117691864 -3565666 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1482 2837 262 89 172 chr12 117691864 117692963 -3564567 - L1_Mur3 LINE L1 -1516 4364 3345 3 1482 578 291 21 14 chr12 117692963 117693106 -3564424 - B1_Mur1 SINE Alu -2 147 4 3 1482 346 318 7 108 chr12 117693106 117693150 -3564380 - MT2B LTR ERVL -445 156 128 3 1482 2837 262 89 172 chr12 117693150 117693424 -3564106 - L1_Mur3 LINE L1 -1516 3344 3089 3 1482 1359 62 102 0 chr12 117693424 117693600 -3563930 - B2_Mm2 SINE B2 0 195 2 3 1482 2837 262 89 172 chr12 117693600 117694085 -3563445 - L1_Mur3 LINE L1 -2792 3088 2620 3 1482 3070 70 44 3 chr12 117694085 117694469 -3563061 + MTB LTR MaLR 1 400 0 3 1482 2837 262 89 172 chr12 117694469 117694494 -3563036 - L1_Mur3 LINE L1 -3261 2619 2592 3 1482 699 235 0 29 chr12 117694494 117694630 -3562900 + B1_Mm SINE Alu 1 132 -15 3 1482 2837 262 89 172 chr12 117694630 117695813 -3561717 - L1_Mur3 LINE L1 -3289 2591 1429 3 1482 795 200 8 0 chr12 117695813 117695943 -3561587 - B1_Mur3 SINE Alu -18 131 1 3 1482 2837 300 79 100 chr12 117695943 117696377 -3561153 - L1_Mur3 LINE L1 -4452 1428 977 3 1482 1285 220 121 123 chr12 117697039 117697275 -3560255 - MT2A LTR ERVL -72 461 238 3 1482 1291 55 0 0 chr12 117697275 117697421 -3560109 + B1_Mus1 SINE Alu 2 147 -1 3 1482 1285 220 121 123 chr12 117697421 117697646 -3559884 - MT2A LTR ERVL -296 237 1 3 1482 816 246 24 33 chr12 117697646 117697844 -3559686 + B3 SINE B2 21 216 0 3 1482 386 232 62 27 chr12 117697851 117697997 -3559533 - L1MC LINE L1 -809 5337 5187 3 1482 380 305 42 8 chr12 117699487 117699606 -3557924 - MER91B DNA Tip100 0 190 68 3 1482 23 0 0 0 chr12 117701158 117701181 -3556349 + AT_rich Low_complexity Low_complexity 1 23 0 3 1482 21 100 0 0 chr12 117701882 117701952 -3555578 + AT_rich Low_complexity Low_complexity 1 70 0 3 185 2639 256 74 29 chr12 117702085 117702886 -3554644 - Lx7 LINE L1 -897 6799 5963 3 1483 3321 201 22 37 chr12 117702884 117703020 -3554510 + L1_Mur3 LINE L1 5155 5283 -597 3 1483 2835 60 0 20 chr12 117703020 117703376 -3554154 + L1_Mus2 LINE L1 6217 6565 -1 3 1483 3321 201 22 37 chr12 117703376 117703976 -3553554 + L1_Mur3 LINE L1 5284 5880 0 3 1483 525 234 19 9 chr12 117704038 117704146 -3553384 + B3A SINE B2 11 119 -79 3 1483 1140 89 7 0 chr12 117704377 117704523 -3553007 - B1_Mus2 SINE Alu 0 147 1 3 1483 5189 123 57 13 chr12 117704524 117705370 -3552160 - RMER19B LTR ERVK -19 883 1 3 1483 311 161 35 33 chr12 117706507 117706585 -3550945 + ORR1D1 LTR MaLR 1 73 -311 3 1483 391 193 157 0 chr12 117706637 117706720 -3550810 - B1F SINE Alu -34 115 20 3 1483 300 311 118 18 chr12 117706953 117707123 -3550407 - HAL1 LINE L1 -2171 336 150 3 1483 6932 67 10 31 chr12 117707976 117708871 -3548659 - Lx3_Mus LINE L1 0 7009 6134 3 1483 4737 59 68 3 chr12 117708871 117709470 -3548060 + Lx3A LINE L1 5271 5910 -1071 3 1483 221 0 0 33 chr12 117709470 117709500 -3548030 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1483 3306 58 107 6 chr12 117709500 117709676 -3547854 + Lx3A LINE L1 5911 6099 -882 3 1483 849 271 165 42 chr12 117709676 117710058 -3547472 + RCHARR1 DNA MER1_type 73 501 -473 3 1483 899 301 101 35 chr12 117710118 117710486 -3547044 - MT2A LTR ERVL -67 466 75 3 1483 2101 193 33 51 chr12 117710486 117710940 -3546590 + Lx5 LINE L1 6602 7047 -3 3 1483 455 287 18 9 chr12 117711523 117711632 -3545898 - PB1D7 SINE Alu -1 119 10 3 1483 973 259 144 4 chr12 117712331 117712638 -3544892 + MTEb LTR MaLR 1 367 -12 3 1483 307 259 0 0 chr12 117713291 117713349 -3544181 + B1F1 SINE Alu 3 60 -89 3 1483 560 282 25 13 chr12 117713381 117713539 -3543991 + RSINE1 SINE B4 4 163 -2 3 1483 2126 96 53 0 chr12 117714039 117714342 -3543188 - ORR1A2 LTR MaLR -8 319 1 3 1483 2932 57 8 0 chr12 117714374 117714725 -3542805 - L1_Mus1 LINE L1 0 6567 6214 3 1483 808 292 148 44 chr12 117714747 117715242 -3542288 - Lx8 LINE L1 -28 7445 6900 3 1483 429 75 0 0 chr12 117715245 117715298 -3542232 - tRNA-Lys-AAG tRNA tRNA -20 56 4 3 1483 275 257 43 0 chr12 117715298 117715368 -3542162 - Lx7 LINE L1 -820 6876 6804 3 1483 583 164 29 0 chr12 117715368 117715472 -3542058 - U6 snRNA snRNA 0 107 1 3 1483 441 0 0 0 chr12 117715551 117715600 -3541930 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1483 1091 53 46 0 chr12 117715600 117715731 -3541799 - B1_Mus1 SINE Alu -10 138 2 3 1483 259 228 18 0 chr12 117715865 117715922 -3541608 - PB1D7 SINE Alu -60 60 3 3 1483 971 209 67 59 chr12 117716320 117716590 -3540940 - RLTR25B LTR ERVK 0 1103 832 3 1483 246 151 19 19 chr12 117716692 117716746 -3540784 - U7 snRNA snRNA -2 61 8 3 1483 280 342 83 6 chr12 117716851 117717007 -3540523 - RMER10B LTR ERVL -37 361 194 3 1483 757 59 20 0 chr12 117717029 117717130 -3540400 + B1_Mus1 SINE Alu 37 139 -9 3 1483 213 121 0 0 chr12 117717139 117717172 -3540358 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 3 1483 2472 165 114 37 chr12 117717191 117717822 -3539708 - RLTR25B LTR ERVK -266 837 55 3 1483 450 0 0 0 chr12 117718532 117718582 -3538948 + (CAGT)n Simple_repeat Simple_repeat 3 52 0 4 1483 393 166 20 112 chr12 117718660 117718749 -3538781 - PB1 SINE Alu -5 122 31 4 1483 3039 122 5 7 chr12 117719080 117719502 -3538028 + MTC LTR MaLR 1 421 0 4 1483 351 312 11 43 chr12 117719718 117719942 -3537588 + (CCA)n Simple_repeat Simple_repeat 1 216 0 4 1483 634 258 51 6 chr12 117719966 117720122 -3537408 - B3A SINE B2 -33 165 3 4 1483 320 254 70 0 chr12 117720446 117720517 -3537013 - MTE2b LTR MaLR -39 340 265 4 1483 258 105 0 0 chr12 117720716 117720754 -3536776 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1483 1520 54 37 21 chr12 117720857 117721047 -3536483 - B2_Mm2 SINE B2 -1 194 2 4 1483 505 234 38 82 chr12 117721870 117722028 -3535502 - B4A SINE B4 -141 151 1 4 1483 224 204 0 0 chr12 117724150 117724199 -3533331 + G-rich Low_complexity Low_complexity 2 50 0 4 1483 189 213 0 0 chr12 117724342 117724389 -3533141 + (CTG)n Simple_repeat Simple_repeat 3 49 0 4 1483 521 42 14 0 chr12 117725522 117725594 -3531936 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1483 413 203 14 0 chr12 117726496 117726591 -3530939 - ID4_ SINE ID -42 110 10 4 1483 762 204 7 7 chr12 117728356 117728504 -3529026 + B1_Mur2 SINE Alu 2 149 0 4 1483 1744 209 55 43 chr12 117728586 117728985 -3528545 + MTD LTR MaLR 1 404 -15 4 1483 315 0 0 0 chr12 117728992 117729027 -3528503 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 4 1483 647 228 51 56 chr12 117729939 117730134 -3527396 + B3A SINE B2 1 194 -4 4 1483 777 285 75 23 chr12 117730170 117730436 -3527094 + B4A SINE B4 7 286 -6 4 1483 803 207 35 0 chr12 117730593 117730738 -3526792 + MTE2b LTR MaLR 226 375 -4 4 1483 920 144 14 14 chr12 117732627 117732775 -3524755 + B1_Mur2 SINE Alu 1 148 -1 4 1483 231 125 0 0 chr12 117732775 117732815 -3524715 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1483 777 200 96 106 chr12 117733505 117733723 -3523807 - B3 SINE B2 0 216 1 4 1483 21 36 0 0 chr12 117733742 117733770 -3523760 + AT_rich Low_complexity Low_complexity 1 28 0 4 1483 790 293 78 45 chr12 117734552 117734820 -3522710 - B4 SINE B4 -13 279 3 4 1483 391 240 31 10 chr12 117736065 117736162 -3521368 + RMER15 LTR ERVL 33 131 -444 4 1483 737 197 43 101 chr12 117736674 117736883 -3520647 - B3A SINE B2 0 198 2 4 1483 21 36 0 0 chr12 117736883 117736911 -3520619 + AT_rich Low_complexity Low_complexity 1 28 0 4 1483 215 193 35 0 chr12 117737018 117737075 -3520455 + G-rich Low_complexity Low_complexity 2 60 0 4 1483 1235 241 47 4 chr12 117737860 117738139 -3519391 - B4A SINE B4 0 292 2 4 1483 27 0 0 0 chr12 117738139 117738166 -3519364 + AT_rich Low_complexity Low_complexity 1 27 0 4 1483 1139 81 0 7 chr12 117738169 117738318 -3519212 - B1_Mus1 SINE Alu 0 148 1 4 1483 581 184 0 6 chr12 117739531 117739690 -3517840 + (CAAG)n Simple_repeat Simple_repeat 2 159 0 4 1483 575 14 14 0 chr12 117739691 117739763 -3517767 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 4 1483 219 125 0 0 chr12 117739763 117739802 -3517728 + (CAAG)n Simple_repeat Simple_repeat 1 40 0 4 1483 626 178 8 0 chr12 117742020 117742149 -3515381 + CT-rich Low_complexity Low_complexity 2 131 0 4 1483 442 235 48 14 chr12 117742196 117742322 -3515208 - ORR1D1 LTR MaLR -14 405 267 4 1483 231 280 0 0 chr12 117742326 117742401 -3515129 + T-rich Low_complexity Low_complexity 1 75 0 4 1483 256 204 0 0 chr12 117742417 117742466 -3515064 - B2_Mm2 SINE B2 -100 95 47 4 1483 1180 85 43 0 chr12 117742502 117742666 -3514864 - B2_Mm1t SINE B2 -22 171 1 4 1483 16036 176 57 58 chr12 117742666 117748108 -3509422 - Lx LINE L1 -24 6630 1203 4 1483 4345 126 26 52 chr12 117748101 117748855 -3508675 - L1VL4 LINE L1 -5513 789 55 4 1483 1086 201 85 9 chr12 117748855 117749086 -3508444 - ORR1D1 LTR MaLR -111 248 1 4 1483 1441 260 120 31 chr12 117749092 117749517 -3508013 - MT2A LTR ERVL -69 464 2 4 1483 225 94 0 0 chr12 117750543 117750575 -3506955 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1483 330 26 0 0 chr12 117751322 117751361 -3506169 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1483 257 253 81 0 chr12 117751706 117751793 -3505737 + MLT1A0 LTR MaLR 48 141 -224 4 1483 468 123 0 0 chr12 117751906 117751979 -3505551 + (TTCC)n Simple_repeat Simple_repeat 1 73 0 4 1483 3839 154 48 34 chr12 117751985 117752177 -3505353 - RMER1B Other Other 0 1066 868 4 1483 1399 73 6 0 chr12 117752177 117752355 -3505175 - B2_Mm1a SINE B2 -14 179 1 4 1483 3839 154 48 34 chr12 117752355 117752808 -3504722 - RMER1B Other Other -199 867 412 4 1483 450 53 0 0 chr12 117753371 117753428 -3504102 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 4 1483 1294 110 0 5 chr12 117753428 117753620 -3503910 - B2_Mm2 SINE B2 -3 192 2 4 1483 2326 208 103 8 chr12 117753620 117754133 -3503397 - RLTR12A LTR ERVK -6 562 1 4 1483 421 303 11 0 chr12 117754811 117755047 -3502483 + (TG)n Simple_repeat Simple_repeat 1 238 0 4 1483 201 248 19 47 chr12 117755001 117755097 -3502433 + (TATG)n Simple_repeat Simple_repeat 3 97 0 4 1483 1047 112 0 0 chr12 117755097 117755258 -3502272 + (TCTA)n Simple_repeat Simple_repeat 2 162 0 4 1483 201 248 19 47 chr12 117755258 117755267 -3502263 + (TATG)n Simple_repeat Simple_repeat 3 10 0 4 1483 420 337 95 57 chr12 117755340 117755682 -3501848 - ORR1D2 LTR MaLR -5 369 14 4 1483 312 258 60 13 chr12 117755657 117755773 -3501757 - ORR1D1 LTR MaLR -279 129 5 4 1483 2585 258 74 23 chr12 117756189 117756854 -3500676 - ORR1D1-int LTR MaLR -179 1191 487 4 1483 1459 63 0 25 chr12 117756854 117757050 -3500480 - B2_Mm2 SINE B2 -4 191 1 4 1483 2585 258 74 23 chr12 117757050 117757126 -3500404 - ORR1D1-int LTR MaLR -884 486 412 4 1483 589 47 24 0 chr12 117757126 117757211 -3500319 + (TTCTC)n Simple_repeat Simple_repeat 3 89 0 4 1483 4683 178 39 7 chr12 117757232 117758079 -3499451 - Lx5 LINE L1 0 7050 6177 4 1483 672 249 43 120 chr12 117758083 117758316 -3499214 - ORR1D1 LTR MaLR -159 215 1 4 1483 943 262 119 30 chr12 117758317 117758778 -3498752 + L1MA4A LINE L1 4280 4781 -1362 4 1483 180 111 0 0 chr12 117759014 117759041 -3498489 + (TGAG)n Simple_repeat Simple_repeat 1 27 0 4 1483 421 270 314 53 chr12 117759408 117759787 -3497743 + L1MA4A LINE L1 4870 5347 -796 4 1483 1145 302 36 6 chr12 117759923 117760286 -3497244 - Lx8 LINE L1 -153 7320 6947 4 1483 314 287 29 10 chr12 117760287 117760389 -3497141 + L1MA4A LINE L1 5346 5449 -851 4 1483 1706 208 9 16 chr12 117760478 117760801 -3496729 + MTD LTR MaLR 5 325 -94 4 1483 279 172 17 0 chr12 117760833 117760891 -3496639 + L1MA4A LINE L1 5440 5498 -802 4 1483 436 266 9 5 chr12 117760884 117761025 -3496505 + L1MA4A LINE L1 5730 5885 -418 4 1483 854 287 89 5 chr12 117761092 117761568 -3495962 + L1MA5 LINE L1 5436 5967 -333 4 1483 1310 76 23 0 chr12 117761882 117762053 -3495477 + B2_Mm2 SINE B2 2 176 -19 4 1483 386 268 169 32 chr12 117762089 117762243 -3495287 + L1MA5 LINE L1 6126 6300 0 4 1483 305 248 43 103 chr12 117762311 117762428 -3495102 - ID_B1 SINE B4 -27 197 88 4 1483 735 294 5 0 chr12 117763850 117764034 -3493496 + B3A SINE B2 1 185 -13 4 1483 635 248 21 0 chr12 117764103 117764248 -3493282 - L1MA5 LINE L1 -1 6299 6152 4 1483 270 0 0 0 chr12 117764341 117764371 -3493159 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 4 1483 282 229 29 0 chr12 117764374 117764444 -3493086 - PB1D9 SINE Alu -8 112 41 4 1483 5087 169 24 5 chr12 117764485 117765379 -3492151 + Lx4B LINE L1 6074 6984 -74 4 1483 207 0 0 0 chr12 117765391 117765414 -3492116 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1483 576 0 0 0 chr12 117765414 117765477 -3492053 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1483 2562 123 20 79 chr12 117765477 117765593 -3491937 - RMER16 LTR ERVK -3 530 441 4 1483 1385 70 11 16 chr12 117765593 117765783 -3491747 - B2_Mm2 SINE B2 -6 189 1 4 1483 2562 123 20 79 chr12 117765783 117766124 -3491406 - RMER16 LTR ERVK -93 440 100 4 1483 536 308 170 39 chr12 117770142 117770281 -3487249 - Lx8 LINE L1 -1 7472 7325 4 1483 231 36 0 0 chr12 117770281 117770309 -3487221 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1483 500 0 17 0 chr12 117770309 117770368 -3487162 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1483 536 308 170 39 chr12 117770368 117770686 -3486844 - Lx8 LINE L1 -149 7324 6955 4 1483 2106 176 83 8 chr12 117772147 117772531 -3484999 - MTC LTR MaLR -8 413 1 4 1483 236 294 82 0 chr12 117772689 117772774 -3484756 + MIRb SINE MIR 115 206 -62 4 1483 1118 68 0 27 chr12 117773441 117773591 -3483939 - B1_Mus1 SINE Alu -1 147 2 4 1483 244 343 30 0 chr12 117774970 117775069 -3482461 - MLT1A0 LTR MaLR -67 298 197 4 1483 1145 80 68 0 chr12 117775158 117775320 -3482210 - B2_Mm1t SINE B2 -19 174 2 4 1483 608 164 119 32 chr12 117775320 117775446 -3482084 - B1_Mus2 SINE Alu -2 145 9 4 1483 260 257 12 98 chr12 117775373 117775455 -3482075 - MT2B2 LTR ERVL -345 239 165 4 1483 320 206 88 0 chr12 117776400 117776468 -3481062 - ID_B1 SINE B4 -22 202 129 4 1483 523 277 82 63 chr12 117777510 117777668 -3479862 + RSINE1 SINE B4 3 163 -2 4 1483 2077 163 34 8 chr12 117777760 117778118 -3479412 - ORR1B2 LTR MaLR 0 367 1 4 1483 740 87 26 192 chr12 117778499 117778655 -3478875 + B1_Mus1 SINE Alu 19 148 0 4 1483 542 239 262 40 chr12 117778850 117779151 -3478379 - RLTR9A LTR ERVK 0 368 1 4 1483 41841 6 0 0 chr12 117779457 117786071 -3471459 - L1Md_A LINE L1 0 6582 14 4 1483 335 327 56 109 chr12 117786227 117786582 -3470948 - MLT1C LTR MaLR -10 457 122 4 1483 1107 276 50 28 chr12 117786582 117786944 -3470586 - ORR1D2 LTR MaLR 0 370 1 4 1483 335 327 56 109 chr12 117786944 117786965 -3470565 - MLT1C LTR MaLR -346 121 101 4 1483 183 42 0 0 chr12 117787087 117787111 -3470419 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1483 691 236 7 0 chr12 117787123 117787263 -3470267 - ID_B1 SINE B4 0 224 84 4 1483 182 0 77 26 chr12 117789293 117789332 -3468198 + (TATAA)n Simple_repeat Simple_repeat 1 41 0 4 1483 1457 235 25 71 chr12 117789332 117789771 -3467759 - Lx9 LINE L1 -28 7616 7198 4 1483 1329 111 11 0 chr12 117791451 117791641 -3465889 - B2_Mm1t SINE B2 0 193 2 4 1483 180 0 0 0 chr12 117792222 117792242 -3465288 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1483 187 304 24 60 chr12 117792242 117792326 -3465204 - L2 LINE L2 -609 2810 2730 5 1483 657 328 112 7 chr12 117792765 117793051 -3464479 - MER68 LTR ERVL -133 430 115 5 1483 282 340 124 16 chr12 117793216 117793410 -3464120 + L3 LINE CR1 3634 3848 -641 5 1483 317 314 59 8 chr12 117794125 117794244 -3463286 - B1F SINE Alu -21 128 4 5 1483 642 296 62 0 chr12 117794244 117794316 -3463214 - ID SINE ID -138 86 4 5 1483 1312 316 75 19 chr12 117794686 117795316 -3462214 - L1MC3 LINE L1 -1187 6598 5934 5 1483 41782 6 0 1 chr12 117795761 117802117 -3455413 - L1Md_A LINE L1 0 6582 232 5 1483 883 255 23 28 chr12 117803336 117803459 -3454071 + ID_B1 SINE B4 10 132 -92 5 1483 1149 74 0 7 chr12 117803459 117803472 -3454058 - B1_Mus1 SINE Alu 0 148 136 5 1483 333 0 0 0 chr12 117803472 117803509 -3454021 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 5 1483 1149 74 0 7 chr12 117803509 117803644 -3453886 - B1_Mus1 SINE Alu -13 135 1 5 1483 883 255 23 28 chr12 117803644 117803734 -3453796 + ID_B1 SINE B4 133 221 -3 5 1483 2012 140 138 16 chr12 117804704 117805067 -3452463 - MTB_Mm LTR MaLR 0 407 1 5 1483 987 253 79 82 chr12 117805446 117805726 -3451804 + B4 SINE B4 8 286 -6 5 1483 316 347 34 17 chr12 117805742 117805918 -3451612 + (CATG)n Simple_repeat Simple_repeat 2 180 0 5 1483 541 26 52 0 chr12 117806452 117806529 -3451001 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 5 1483 242 255 73 28 chr12 117807074 117807183 -3450347 - LTR73 LTR ERV1 -225 347 234 5 1483 275 103 0 0 chr12 117807221 117807260 -3450270 - ORR1C2 LTR MaLR 0 384 346 5 1483 3743 134 48 14 chr12 117807260 117807714 -3449816 - RLTR26 LTR ERVK 0 642 171 5 1483 225 0 0 0 chr12 117807714 117807739 -3449791 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1483 3743 134 48 14 chr12 117807739 117807905 -3449625 - RLTR26 LTR ERVK -472 170 1 5 1483 1612 157 150 3 chr12 117807905 117808209 -3449321 - ORR1C2 LTR MaLR -35 349 1 5 1483 921 206 122 0 chr12 117808421 117808610 -3448920 - B3 SINE B2 -3 213 2 5 1483 432 289 53 23 chr12 117808612 117808743 -3448787 - B1F SINE Alu 0 149 15 5 1483 258 32 0 0 chr12 117810444 117810475 -3447055 + (TTG)n Simple_repeat Simple_repeat 3 33 0 5 1483 219 69 0 0 chr12 117810856 117810885 -3446645 + (TCC)n Simple_repeat Simple_repeat 3 31 0 5 1483 766 264 30 15 chr12 117810891 117811091 -3446439 - ID_B1 SINE B4 -19 205 3 5 1483 1206 170 94 189 chr12 117811309 117811722 -3445808 - ORR1D1 LTR MaLR 0 374 1 5 1483 1346 32 0 0 chr12 117811885 117812043 -3445487 + B2_Mm1a SINE B2 3 160 -33 5 1483 486 0 0 0 chr12 117812043 117812097 -3445433 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 5 1483 344 367 12 0 chr12 117814177 117814346 -3443184 + (TATATG)n Simple_repeat Simple_repeat 6 176 0 5 1483 280 271 62 119 chr12 117814408 117814601 -3442929 + RLTR21 LTR ERVK 1078 1259 -313 5 1483 369 0 0 0 chr12 117816663 117816704 -3440826 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1483 216 0 0 0 chr12 117820124 117820148 -3437382 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1483 27 0 0 0 chr12 117820756 117820783 -3436747 + AT_rich Low_complexity Low_complexity 1 27 0 5 1483 239 342 13 38 chr12 117820887 117820966 -3436564 + ID4 SINE ID 2 78 -5 5 1483 225 0 0 0 chr12 117820966 117820991 -3436539 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1483 244 239 0 0 chr12 117821114 117821160 -3436370 + L1M3 LINE L1 5617 5662 -509 5 1483 282 266 131 41 chr12 117821360 117821505 -3436025 - CYRA11_Mm Unknown Y-chromosome -288 329 172 5 1483 607 197 66 0 chr12 117821384 117821506 -3436024 + URR1B DNA MER1_type 96 225 0 5 1483 1007 211 14 23 chr12 117822379 117822597 -3434933 - B3 SINE B2 0 216 1 5 1483 22 0 0 0 chr12 117822606 117822628 -3434902 + AT_rich Low_complexity Low_complexity 1 22 0 5 1483 590 261 318 38 chr12 117822628 117822917 -3434613 - MTE2b LTR MaLR -5 374 5 5 1483 391 195 195 0 chr12 117823394 117823481 -3434049 + U6 snRNA snRNA 1 104 -3 5 1483 549 0 0 0 chr12 117823484 117823545 -3433985 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1483 198 0 0 0 chr12 117823999 117824021 -3433509 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 5 1483 2344 190 72 18 chr12 117824299 117824797 -3432733 - RMER5 LTR ERV1 -9 525 1 5 1483 277 250 105 0 chr12 117824834 117824910 -3432620 - MER34 LTR ERV1 -84 458 375 5 1483 1153 215 129 107 chr12 117825345 117825499 -3432031 + MTEb LTR MaLR 1 178 -201 5 1483 486 0 0 0 chr12 117825499 117825553 -3431977 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1483 1153 215 129 107 chr12 117825553 117825674 -3431856 + MTEb LTR MaLR 179 317 -62 5 1483 554 242 128 69 chr12 117825674 117825878 -3431652 + B3 SINE B2 1 216 0 5 1483 1153 215 129 107 chr12 117825878 117825965 -3431565 + MTEb LTR MaLR 318 371 -8 5 1483 271 0 51 0 chr12 117826366 117826405 -3431125 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1483 1895 186 102 0 chr12 117826541 117826922 -3430608 - MTC LTR MaLR -1 420 1 5 1483 1305 263 58 77 chr12 117827032 117827185 -3430345 - RMER5 LTR ERV1 0 534 383 5 1483 1240 174 19 9 chr12 117827185 117827399 -3430131 - B3 SINE B2 0 216 1 5 1483 1305 263 58 77 chr12 117827399 117827711 -3429819 - RMER5 LTR ERV1 -152 382 78 5 1483 569 302 17 45 chr12 117827844 117828021 -3429509 + B4A SINE B4 45 216 -76 5 1483 285 29 0 0 chr12 117828021 117828055 -3429475 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1483 334 228 13 0 chr12 117828107 117828265 -3429265 + (CA)n Simple_repeat Simple_repeat 1 160 0 5 1483 719 97 181 24 chr12 117830198 117830325 -3427205 + B1_Mus2 SINE Alu 1 147 0 5 1483 1251 249 49 12 chr12 117830345 117830674 -3426856 - MTEb LTR MaLR 0 379 39 5 1483 1212 42 7 0 chr12 117831011 117831155 -3426375 - B1_Mm SINE Alu 0 147 3 5 1483 1972 50 0 0 chr12 117831984 117832224 -3425306 + L1Md_A LINE L1 6343 6582 0 5 1483 240 35 0 0 chr12 117832269 117832298 -3425232 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1483 180 0 0 0 chr12 117832863 117832883 -3424647 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 5 185 1243 235 134 17 chr12 117833710 117834061 -3423469 + MTD LTR MaLR 14 405 -14 5 1484 2418 236 50 141 chr12 117834075 117834987 -3422543 + MTD-int LTR MaLR 3 831 -427 5 1484 413 279 0 4 chr12 117834987 117835235 -3422295 + (TG)n Simple_repeat Simple_repeat 1 246 0 5 1484 339 169 40 66 chr12 117835239 117835315 -3422215 + MTD-int LTR MaLR 825 898 -360 5 1484 411 220 87 11 chr12 117835338 117835500 -3422030 + MTD LTR MaLR 213 417 -2 5 1484 522 258 159 22 chr12 117835500 117835678 -3421852 + MTE2a LTR MaLR 175 377 -2 5 1484 207 308 0 0 chr12 117839389 117839441 -3418089 + (TATG)n Simple_repeat Simple_repeat 4 55 0 5 1484 984 264 122 20 chr12 117839518 117839862 -3417668 - MTEa LTR MaLR 0 379 1 5 1484 554 239 0 11 chr12 117839900 117840082 -3417448 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1484 234 0 0 0 chr12 117841706 117841732 -3415798 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1484 249 283 48 95 chr12 117841954 117842122 -3415408 + MER5B DNA MER1_type 12 171 -7 5 1484 434 204 19 93 chr12 117842429 117842537 -3414993 + MT2B LTR ERVL 158 257 -344 5 1484 1038 72 7 28 chr12 117842443 117842457 -3415073 + B1_Mus1 SINE Alu 10 137 -11 5 1484 296 236 96 101 chr12 117842457 117842570 -3414960 - YREP_Mm Unknown Unknown -1518 294 173 5 1484 240 35 0 0 chr12 117842570 117842599 -3414931 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1484 1038 72 7 28 chr12 117842599 117842613 -3414917 + B1_Mus1 SINE Alu 138 148 0 5 1484 296 236 96 101 chr12 117842613 117842683 -3414847 - YREP_Mm Unknown Unknown -1640 172 98 5 1484 206 378 30 10 chr12 117842927 117843026 -3414504 + MIRb SINE MIR 64 164 -104 5 1484 1172 82 0 0 chr12 117843071 117843217 -3414313 + B1_Mus2 SINE Alu 2 147 0 5 1484 360 64 0 0 chr12 117843221 117843268 -3414262 + (A)n Simple_repeat Simple_repeat 1 47 0 5 1484 234 219 0 0 chr12 117843399 117843463 -3414067 + (ATG)n Simple_repeat Simple_repeat 3 66 0 5 1484 405 328 17 39 chr12 117843500 117843681 -3413849 - HAL1-2a_MD LINE L1 -502 2522 2346 5 1484 429 300 35 91 chr12 117843694 117843925 -3413605 - HAL1-2a_MD LINE L1 -494 2530 2313 5 1484 1724 26 0 0 chr12 117844470 117844662 -3412868 + B2_Mm1t SINE B2 1 192 -1 5 1484 23 0 0 0 chr12 117845365 117845388 -3412142 + AT_rich Low_complexity Low_complexity 1 23 0 5 1484 898 101 123 12 chr12 117846015 117846070 -3411460 - B2_Mm2 SINE B2 -6 189 134 5 1484 531 0 0 0 chr12 117846070 117846129 -3411401 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1484 898 101 123 12 chr12 117846129 117846243 -3411287 - B2_Mm2 SINE B2 -62 133 1 5 1484 202 209 0 0 chr12 117846769 117846812 -3410718 + (CATTT)n Simple_repeat Simple_repeat 2 44 0 5 1484 543 225 100 0 chr12 117846954 117847074 -3410456 + ID_B1 SINE B4 93 224 0 5 1484 1414 238 58 14 chr12 117847716 117848061 -3409469 - MTE2a LTR MaLR -9 370 11 5 1484 25082 11 0 0 chr12 117848212 117851695 -3405835 - L1Md_A LINE L1 -12 6570 3089 5 1484 924 211 34 14 chr12 117851975 117852182 -3405348 - B3 SINE B2 -5 211 1 5 1484 309 242 55 42 chr12 117853868 117854028 -3403502 + L1MEg LINE L1 1434 1605 -4561 5 1484 311 282 79 92 chr12 117854033 117854197 -3403333 + RSINE1 SINE B4 4 165 0 5 1484 546 330 32 13 chr12 117854641 117854954 -3402576 + L1MEg LINE L1 4789 5107 -1039 5 1484 1186 291 40 48 chr12 117854959 117855335 -3402195 - MTEa LTR MaLR 0 379 7 5 1484 207 0 0 0 chr12 117855478 117855501 -3402029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1484 774 310 65 118 chr12 117855728 117856252 -3401278 + Lx9 LINE L1 6959 7455 -189 5 1484 726 12 0 0 chr12 117856252 117856335 -3401195 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1484 774 310 65 118 chr12 117856335 117856351 -3401179 + Lx9 LINE L1 7456 7470 -174 5 1484 211 225 0 0 chr12 117856386 117856426 -3401104 - ID4_ SINE ID -40 43 4 5 1484 421 337 164 38 chr12 117856603 117856945 -3400585 + L1M5 LINE L1 5017 5401 -745 5 1484 1049 233 78 19 chr12 117859375 117859633 -3397897 - MTD LTR MaLR 0 419 147 5 1484 243 0 0 0 chr12 117859848 117859875 -3397655 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1484 342 278 172 31 chr12 117860374 117860663 -3396867 - L1MA9 LINE L1 0 6168 5816 5 1484 1146 54 0 26 chr12 117860663 117860814 -3396716 + B1_Mus2 SINE Alu 1 147 0 5 1484 291 279 193 81 chr12 117860814 117860871 -3396659 - L1MA9 LINE L1 -462 5829 5775 5 1484 768 283 143 112 chr12 117861507 117862033 -3395497 - LTR69 LTR ERVL -5 583 42 6 1484 2769 98 57 14 chr12 117862035 117862458 -3395072 - BGLII_B LTR ERVK 0 441 1 6 1484 364 171 12 12 chr12 117863573 117863656 -3393874 + CT-rich Low_complexity Low_complexity 3 85 0 6 1484 735 197 0 0 chr12 117863659 117863786 -3393744 - B1_Mur1 SINE Alu -5 144 18 6 1484 320 302 40 40 chr12 117863688 117863812 -3393718 - B4 SINE B4 -88 204 81 6 1484 184 322 31 115 chr12 117866086 117866216 -3391314 + MIR SINE MIR 116 234 -28 6 1484 504 224 51 8 chr12 117867748 117867865 -3389665 - RSINE1 SINE B4 -30 135 14 6 1484 789 207 149 21 chr12 117868015 117868176 -3389354 - B4A SINE B4 -19 273 110 6 1484 402 21 0 0 chr12 117868176 117868223 -3389307 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1484 789 207 149 21 chr12 117868223 117868303 -3389227 - B4A SINE B4 -183 109 1 6 1484 180 176 0 0 chr12 117868674 117868708 -3388822 + (CAA)n Simple_repeat Simple_repeat 2 35 0 6 1484 2318 82 15 62 chr12 117869132 117869471 -3388059 + ORR1A2 LTR MaLR 5 327 0 6 1484 369 306 0 0 chr12 117869518 117869603 -3387927 + PB1D10 SINE Alu 2 86 -31 6 1484 270 0 0 0 chr12 117869619 117869649 -3387881 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1484 216 0 0 0 chr12 117869649 117869672 -3387858 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1484 309 265 0 89 chr12 117870122 117870234 -3387296 + MT2B LTR ERVL 163 264 -337 6 1484 918 35 9 0 chr12 117870154 117870268 -3387262 + B1_Mus1 SINE Alu 34 148 0 6 1484 212 0 36 0 chr12 117870273 117870301 -3387229 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1484 246 267 56 0 chr12 117872075 117872165 -3385365 - Tigger6b DNA MER2_type -53 1544 1450 6 1484 304 324 110 0 chr12 117872614 117872759 -3384771 - Tigger6b DNA MER2_type -1384 213 53 6 1484 1971 135 77 46 chr12 117872975 117873033 -3384497 - ORR1B2 LTR MaLR -1 366 313 6 1484 2211 46 3 48 chr12 117873033 117873328 -3384202 - L1_Mus2 LINE L1 0 6566 6285 6 1484 1971 135 77 46 chr12 117873328 117873483 -3384047 - ORR1B2 LTR MaLR -55 312 164 6 1484 513 0 0 0 chr12 117873483 117873540 -3383990 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1484 1971 135 77 46 chr12 117873540 117873674 -3383856 - ORR1B2 LTR MaLR -204 163 8 6 1484 2105 256 86 106 chr12 117873938 117875875 -3381655 - RLTR19-int LTR ERVK -2168 3969 1907 6 1484 2516 134 48 2 chr12 117875965 117876360 -3381170 + MTC LTR MaLR 1 413 -8 6 1484 300 184 55 55 chr12 117876826 117876935 -3380595 - RLTR19-int LTR ERVK -3915 1607 1499 6 1484 1067 206 63 73 chr12 117876921 117877324 -3380206 - RLTR19-int LTR ERVK -3971 1551 1047 6 1484 541 148 0 27 chr12 117877327 117877438 -3380092 + C-rich Low_complexity Low_complexity 3 110 0 6 1484 430 188 0 12 chr12 117877457 117877469 -3380061 - B1_Mur4 SINE Alu 0 150 139 6 1484 867 34 25 0 chr12 117877469 117877588 -3379942 + (TCTCCC)n Simple_repeat Simple_repeat 6 127 0 6 1484 430 188 0 12 chr12 117877588 117877656 -3379874 - B1_Mur4 SINE Alu -12 138 71 6 1484 540 185 0 129 chr12 117877664 117877788 -3379742 - B1_Mur4 SINE Alu -30 120 13 6 1484 276 235 29 0 chr12 117878249 117878317 -3379213 - RLTR19-int LTR ERVK -4348 1174 1105 6 1484 213 265 14 14 chr12 117879336 117879405 -3378125 + G-rich Low_complexity Low_complexity 5 73 0 6 1484 760 239 22 97 chr12 117883211 117883438 -3374092 + ID_B1 SINE B4 6 215 -9 6 1484 1649 149 170 8 chr12 117884444 117884630 -3372900 - RMER17C LTR ERVK 0 410 178 6 1484 399 21 0 0 chr12 117884630 117884678 -3372852 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1484 1649 149 170 8 chr12 117884678 117884740 -3372790 - RMER17C LTR ERVK -233 177 110 6 1484 234 0 0 0 chr12 117884740 117884766 -3372764 + (GAGAA)n Simple_repeat Simple_repeat 4 29 0 6 1484 1649 149 170 8 chr12 117884766 117884869 -3372661 - RMER17C LTR ERVK -301 109 4 6 1484 219 173 0 0 chr12 117885977 117886029 -3371501 + A-rich Low_complexity Low_complexity 1 52 0 6 1484 360 0 0 0 chr12 117886686 117886726 -3370804 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1484 288 0 0 0 chr12 117887960 117887992 -3369538 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1484 660 48 0 0 chr12 117887992 117888075 -3369455 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1484 468 0 0 0 chr12 117888075 117888126 -3369404 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1484 576 239 26 9 chr12 117888140 117888254 -3369276 - RSINE1 SINE B4 -48 117 2 6 1484 261 0 0 0 chr12 117888254 117888283 -3369247 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 6 1484 344 239 116 25 chr12 117889123 117889229 -3368301 + MTEa LTR MaLR 6 108 -271 6 1484 226 159 0 73 chr12 117889340 117889408 -3368122 + A-rich Low_complexity Low_complexity 3 65 0 6 1484 2427 156 37 0 chr12 117889982 117890386 -3367144 - MTC LTR MaLR -2 419 1 6 1484 959 256 92 0 chr12 117890394 117890644 -3366886 + B4A SINE B4 13 285 -7 6 1484 371 56 19 0 chr12 117890660 117890714 -3366816 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1484 188 328 75 0 chr12 117892077 117892144 -3365386 - L2a LINE L2 -56 3370 3299 6 1484 907 231 68 99 chr12 117892558 117892966 -3364564 + MT2A LTR ERVL 1 526 -75 6 1484 647 57 11 0 chr12 117892966 117893054 -3364476 + (TC)n Simple_repeat Simple_repeat 1 89 0 6 1484 207 0 0 0 chr12 117893054 117893076 -3364454 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1484 813 286 19 56 chr12 117893076 117893096 -3364434 + MT2A LTR ERVL 527 546 -55 6 1484 420 227 22 11 chr12 117894712 117894890 -3362640 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1484 286 238 109 47 chr12 117895045 117895173 -3362357 + HAL1 LINE L1 795 930 -1577 6 1484 1200 297 18 3 chr12 117895375 117895706 -3361824 + Lx8 LINE L1 6335 6670 -803 6 1484 249 318 24 0 chr12 117897289 117897374 -3360156 - MER89 LTR ERV1 -246 313 227 6 1484 270 207 0 0 chr12 117899254 117899312 -3358218 + G-rich Low_complexity Low_complexity 1 58 0 6 1484 341 301 27 87 chr12 117900503 117900632 -3356898 - B1F1 SINE Alu -26 123 1 6 1484 330 250 104 39 chr12 117900711 117900865 -3356665 - MLT2D LTR ERVL -138 276 113 6 1484 1232 142 107 10 chr12 117902021 117902227 -3355303 - URR1A DNA MER1_type 0 226 1 6 1484 347 241 0 46 chr12 117903287 117903374 -3354156 - ORR1E-int LTR MaLR -1497 83 1 6 1484 379 325 88 95 chr12 117903378 117903663 -3353867 - ORR1E LTR MaLR -2 357 75 6 1484 307 143 0 0 chr12 117903702 117903751 -3353779 - ORR1A3 LTR MaLR -8 338 290 6 1484 716 86 9 0 chr12 117903761 117903866 -3353664 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 1484 436 200 170 16 chr12 117903866 117903934 -3353596 - RMER17C LTR ERVK -132 278 184 6 1484 1002 97 0 0 chr12 117903934 117904078 -3353452 + (GGA)n Simple_repeat Simple_repeat 2 145 0 6 1484 436 200 170 16 chr12 117904078 117904197 -3353333 - RMER17C LTR ERVK -227 183 63 6 1484 1596 145 9 72 chr12 117904158 117904478 -3353052 - ORR1A3 LTR MaLR -26 300 1 6 1484 3751 108 14 5 chr12 117904478 117905057 -3352473 - ORR1A3-int LTR MaLR 0 1963 1380 6 1484 2239 283 66 22 chr12 117905059 117905739 -3351791 + Lx7 LINE L1 6599 7308 -388 6 1484 1619 121 51 0 chr12 117906655 117906912 -3350618 - ORR1A3 LTR MaLR -2 324 55 6 1484 1326 133 141 93 chr12 117906912 117907267 -3350263 + ORR1A3-int LTR MaLR 436 807 -1156 6 1484 1274 151 55 63 chr12 117907079 117907334 -3350196 + MT2B LTR ERVL 35 287 -314 6 1484 3119 124 27 0 chr12 117907293 117907849 -3349681 + ORR1A3-int LTR MaLR 718 1288 -675 6 1484 3709 249 55 14 chr12 117907851 117908755 -3348775 - Lx8 LINE L1 -238 7235 6295 6 1484 417 20 0 0 chr12 117909164 117909214 -3348316 + (TATG)n Simple_repeat Simple_repeat 4 53 0 6 1484 287 254 80 53 chr12 117909288 117909475 -3348055 - L1M5 LINE L1 -621 5823 5632 6 1484 254 266 25 0 chr12 117910600 117910679 -3346851 + ID4 SINE ID 2 82 -1 6 1484 5883 100 0 4 chr12 117910955 117911887 -3345643 - Lx LINE L1 -295 6359 5432 6 1484 1614 98 69 45 chr12 117911887 117912177 -3345353 + Lx LINE L1 6358 6654 0 6 1484 21 36 0 0 chr12 117912184 117912212 -3345318 + AT_rich Low_complexity Low_complexity 1 28 0 6 1484 3023 71 2 10 chr12 117912371 117912769 -3344761 - MTA_Mm LTR MaLR 0 396 2 6 1484 1508 249 25 20 chr12 117912893 117913291 -3344239 - Lx8 LINE L1 -341 7132 6733 6 1484 679 214 205 42 chr12 117913274 117913533 -3343997 + Lx8 LINE L1 7168 7468 -5 6 1484 439 282 10 0 chr12 117913769 117913872 -3343658 - B3A SINE B2 -90 108 5 6 1484 1063 256 4 4 chr12 117914481 117914724 -3342806 - B4 SINE B4 -21 271 29 6 1484 369 256 9 37 chr12 117916687 117917013 -3340517 + GA-rich Low_complexity Low_complexity 1 316 0 6 1484 8301 52 16 4 chr12 117918099 117919801 -3337729 - L1Md_F2 LINE L1 0 6582 4863 6 1484 16174 69 2 13 chr12 117919794 117921043 -3336487 - L1Md_F2 LINE L1 -2499 3384 2161 6 1484 1438 84 5 0 chr12 117921043 117921234 -3336296 - B2_Mm1a SINE B2 0 193 2 6 1484 16174 89 30 7 chr12 117921234 117922969 -3334561 - L1Md_F2 LINE L1 -3723 2160 371 6 1484 1997 150 99 3 chr12 117923467 117923829 -3333701 - Lx9 LINE L1 -471 7173 6777 6 1484 1260 221 8 0 chr12 117923829 117924073 -3333457 + Lx9 LINE L1 7163 7408 -236 6 1484 926 251 159 30 chr12 117924552 117924885 -3332645 - MTEa LTR MaLR 0 379 4 6 1484 4646 293 52 27 chr12 117924894 117926426 -3331104 - MTEa-int LTR MaLR -9 1571 2 6 1484 354 245 151 36 chr12 117926428 117926631 -3330899 - MTEa LTR MaLR 0 379 1 6 1484 561 264 162 0 chr12 117926786 117927021 -3330509 - RMER21B LTR ERV1 -275 567 295 6 1484 2070 227 53 55 chr12 117928166 117928745 -3328785 - Lx7 LINE L1 0 7696 7119 6 1484 216 0 0 0 chr12 117928745 117928769 -3328761 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1484 306 0 0 0 chr12 117928777 117928811 -3328719 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 6 1484 22 0 0 0 chr12 117928848 117928870 -3328660 + AT_rich Low_complexity Low_complexity 1 22 0 6 1484 6400 75 34 7 chr12 117928870 117929723 -3327807 - Lx3_Mus LINE L1 0 7009 6134 6 1484 284 194 53 118 chr12 117929724 117929800 -3327730 - Lx7 LINE L1 -507 7189 7119 6 1484 3189 238 153 46 chr12 117929805 117930370 -3327160 - RMER1A Other Other -10 1020 389 6 1484 1221 34 7 0 chr12 117930370 117930516 -3327014 - B1_Mus2 SINE Alu 0 147 1 6 1484 3189 238 153 46 chr12 117930516 117930869 -3326661 - RMER1A Other Other -642 388 3 6 1484 1326 301 20 52 chr12 117930870 117931409 -3326121 - RMER1B Other Other -549 517 17 6 1484 2207 198 103 47 chr12 117931593 117932087 -3325443 - Lx7 LINE L1 -982 6714 6193 6 1484 22550 166 57 24 chr12 117932081 117933016 -3324514 - Lx7 LINE L1 -1763 5933 4973 6 1484 5675 35 13 10 chr12 117933016 117933706 -3323824 - L1Md_F3 LINE L1 0 6584 5893 6 1484 22550 161 55 24 chr12 117933706 117937379 -3320151 - Lx7 LINE L1 -908 4972 1179 6 1484 1067 248 111 116 chr12 117937389 117937726 -3319804 + RMER4B LTR ERVK 17 340 -245 6 1484 1142 102 0 6 chr12 117937726 117937903 -3319627 + (GAA)n Simple_repeat Simple_repeat 2 177 0 6 1484 1067 248 111 116 chr12 117937903 117938126 -3319404 + RMER4B LTR ERVK 341 574 -11 6 1484 378 174 0 0 chr12 117938132 117938201 -3319329 - L1_Mur3 LINE L1 -6543 1169 1101 6 1484 38959 42 0 3 chr12 117938201 117944363 -3313167 - L1Md_T LINE L1 0 6585 347 6 1484 664 161 16 31 chr12 117944350 117944478 -3313052 - L1_Mur3 LINE L1 -6597 1115 990 6 1484 376 167 0 0 chr12 117944491 117944557 -3312973 - RLTR14 LTR ERV1 -313 69 4 6 1484 975 129 43 0 chr12 117944630 117944793 -3312737 + ORR1B1 LTR MaLR 3 172 -222 6 1484 311 211 0 0 chr12 117944796 117944853 -3312677 - L1_Mur3 LINE L1 -6712 1000 944 6 1484 1371 251 31 57 chr12 117944848 117945266 -3312264 - L1_Mur3 LINE L1 -7027 685 279 6 1484 522 0 0 0 chr12 117945274 117945332 -3312198 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 6 1484 450 53 0 0 chr12 117945849 117945906 -3311624 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1484 254 259 0 17 chr12 117945918 117945977 -3311553 - ID4_ SINE ID -23 60 3 6 1484 734 287 191 12 chr12 117945984 117946386 -3311144 - L1MB3 LINE L1 -50 6133 5660 7 1484 677 204 6 0 chr12 117946558 117946894 -3310636 + (TG)n Simple_repeat Simple_repeat 1 338 0 7 1484 968 287 46 7 chr12 117946921 117947202 -3310328 - B4A SINE B4 0 292 1 7 1484 302 268 0 0 chr12 117948709 117948780 -3308750 - ID_B1 SINE B4 -48 176 106 7 1484 203 347 13 13 chr12 117949576 117949652 -3307878 + L2c LINE L2 3254 3329 -58 7 1484 248 286 25 49 chr12 117949801 117949882 -3307648 - ID4 SINE ID -4 79 1 7 1484 192 250 77 0 chr12 117951192 117951244 -3306286 + MIR SINE MIR 94 149 -59 7 1484 240 333 0 0 chr12 117952342 117952498 -3305032 + (CA)n Simple_repeat Simple_repeat 1 156 0 7 1484 383 270 225 39 chr12 117952772 117953057 -3304473 - MLT1A LTR MaLR -23 351 14 7 1484 7058 128 23 16 chr12 117953089 117953639 -3303891 - Lx5 LINE L1 -1067 5983 5432 7 1484 1693 69 0 5 chr12 117953639 117953858 -3303672 - L1Md_F2 LINE L1 -10 6572 6355 7 1484 7058 134 40 30 chr12 117953858 117954623 -3302907 - Lx5 LINE L1 -446 5431 4646 7 1484 1418 190 75 80 chr12 117954980 117955369 -3302161 + ORR1B1 LTR MaLR 8 394 0 7 1484 2661 163 112 21 chr12 117955711 117956237 -3301293 - RMER15 LTR ERVL -1 574 1 7 1484 414 0 0 0 chr12 117958651 117958697 -3298833 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1484 207 88 0 0 chr12 117958699 117958733 -3298797 + (GA)n Simple_repeat Simple_repeat 2 35 0 7 1484 312 212 61 0 chr12 117960207 117960273 -3297257 + ID4_ SINE ID 1 70 -13 7 1484 288 0 0 0 chr12 117960812 117960844 -3296686 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1484 328 197 15 0 chr12 117961084 117961150 -3296380 - RLTR28 LTR ERVL -1 523 457 7 1484 336 328 49 61 chr12 117962015 117962359 -3295171 - RodERV21-int LTR ERV1 -3113 3978 3639 7 1484 679 307 81 77 chr12 117962726 117963470 -3294060 - RodERV21-int LTR ERV1 -2464 2527 1781 7 1484 462 205 12 0 chr12 117964007 117964090 -3293440 - RodERV21-int LTR ERV1 -4087 904 821 7 185 250 231 0 84 chr12 117964793 117964864 -3292666 + RMER1C Other Other 520 584 -758 7 1485 503 214 81 2 chr12 117965016 117965158 -3292372 - MERVL-int LTR ERVL -3074 2411 2255 7 1485 754 260 26 143 chr12 117965223 117965614 -3291916 - ORR1D1 LTR MaLR -29 345 1 7 1485 432 344 50 14 chr12 117966203 117966421 -3291109 + RMER15 LTR ERVL 337 562 -13 7 1485 1139 332 53 24 chr12 117966501 117966895 -3290635 + RMER15-int LTR ERVL 218 624 -4375 7 1485 1755 179 154 19 chr12 117966895 117967265 -3290265 - MTC LTR MaLR 0 421 2 7 1485 1139 332 53 24 chr12 117967265 117967419 -3290111 + RMER15-int LTR ERVL 625 782 -4217 7 1485 438 279 291 4 chr12 117967453 117967709 -3289821 + RMER15-int LTR ERVL 1254 1583 -3416 7 1485 6404 47 34 4 chr12 117967783 117968567 -3288963 - RLTR13C2 LTR ERVK 0 808 1 7 1485 1139 65 0 0 chr12 117968919 117969058 -3288472 + B1_Mm SINE Alu 1 139 -8 7 1485 297 0 0 0 chr12 117969058 117969091 -3288439 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1485 3581 20 0 0 chr12 117969138 117969534 -3287996 - MTA_Mm LTR MaLR 0 396 1 7 1485 910 157 6 6 chr12 117969547 117969726 -3287804 + CT-rich Low_complexity Low_complexity 2 180 0 7 1485 303 93 0 0 chr12 117969767 117969810 -3287720 + (CTTG)n Simple_repeat Simple_repeat 2 44 0 7 1485 544 157 0 0 chr12 117969812 117969901 -3287629 - B1_Mur2 SINE Alu -15 134 46 7 1485 722 304 69 4 chr12 117970380 117970654 -3286876 + Lx8 LINE L1 6384 6675 -798 7 1485 952 89 35 65 chr12 117970655 117970824 -3286706 - RMER17A LTR ERVK -118 633 470 7 1485 724 193 129 101 chr12 117970844 117971037 -3286493 + RMER15-int LTR ERVL 4612 4798 -201 7 1485 3673 87 206 36 chr12 117971037 117971393 -3286137 - RMER17A LTR ERVK 0 751 321 7 1485 940 81 31 0 chr12 117971393 117971554 -3285976 + (GA)n Simple_repeat Simple_repeat 1 166 0 7 1485 3673 87 206 36 chr12 117971554 117971839 -3285691 - RMER17A LTR ERVK -431 320 2 7 1485 724 193 129 101 chr12 117971839 117971893 -3285637 + RMER15-int LTR ERVL 4799 4866 -133 7 1485 22693 209 47 18 chr12 117971917 117973575 -3283955 + MERVL_2A-int LTR ERVL 557 2259 -3502 7 1485 4989 38 2 0 chr12 117973575 117974156 -3283374 + L1Md_F2 LINE L1 5989 6570 -12 7 1485 22693 209 47 18 chr12 117974156 117977190 -3280340 + MERVL_2A-int LTR ERVL 2260 5385 -376 7 1485 424 235 0 10 chr12 117978115 117978214 -3279316 + MLT2B3 LTR ERVL 1 98 -456 7 1485 325 0 44 0 chr12 117981546 117981591 -3275939 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 7 1485 1010 215 14 9 chr12 117981648 117981859 -3275671 + B3 SINE B2 1 212 -4 7 1485 4520 187 76 37 chr12 117982010 117982955 -3274575 + RMER1A Other Other 43 1024 -6 7 1485 272 350 83 22 chr12 117983105 117983286 -3274244 - MER45B DNA Tip100 -212 828 637 7 1485 420 252 75 8 chr12 117983291 117983411 -3274119 - B1F2 SINE Alu -7 142 15 7 1485 1688 175 35 56 chr12 117983414 117983789 -3273741 + ORR1D1 LTR MaLR 1 367 -7 7 1485 354 271 108 79 chr12 117985207 117985447 -3272083 + L1MEd LINE L1 954 1200 -4919 7 1485 397 131 0 0 chr12 117987056 117987117 -3270413 + B1_Mus2 SINE Alu 84 144 -3 7 1485 180 0 0 0 chr12 117987117 117987137 -3270393 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1485 504 0 0 0 chr12 117987480 117987536 -3269994 + (TATG)n Simple_repeat Simple_repeat 1 56 0 7 1485 6488 80 18 6 chr12 117987563 117988444 -3269086 - Lx3_Mus LINE L1 0 7009 6118 7 1485 354 189 14 0 chr12 117988610 117988684 -3268846 + Lx6 LINE L1 7377 7451 -9 7 1485 398 294 0 52 chr12 117988719 117988834 -3268696 + PB1D10 SINE Alu 7 115 -2 7 1485 370 195 27 43 chr12 117989322 117989705 -3267825 + (TCTCTG)n Simple_repeat Simple_repeat 1 376 0 7 1485 1290 184 129 47 chr12 117992864 117993206 -3264324 + ORR1D1 LTR MaLR 1 370 -4 7 1485 4173 212 48 41 chr12 117993229 117994248 -3263282 + ORR1D1-int LTR MaLR 1 1026 -344 7 1485 689 325 74 16 chr12 117994328 117994767 -3262763 + L1M3e LINE L1 1748 2217 -4820 7 1485 309 323 164 21 chr12 117995115 117995338 -3262192 + L1M3e LINE L1 2391 2639 -4468 7 1485 2435 156 137 77 chr12 117995338 117995989 -3261541 + RMER6C LTR ERVK 1 690 0 7 1485 309 323 164 21 chr12 117995989 117996014 -3261516 + L1M3e LINE L1 2640 2663 -4444 7 1485 5835 69 1 8 chr12 117996014 117996762 -3260768 + L1Md_F2 LINE L1 5828 6570 -12 7 1485 309 323 164 21 chr12 117996762 117996885 -3260645 + L1M3e LINE L1 2664 2815 -4292 7 1485 252 0 0 0 chr12 117996913 117996941 -3260589 + (CAA)n Simple_repeat Simple_repeat 2 29 0 7 1485 15374 142 25 14 chr12 117996968 117999242 -3258288 + L1_Mur1 LINE L1 2539 4856 -1030 7 1485 2348 99 9 0 chr12 117999242 117999566 -3257964 + ORR1A2 LTR MaLR 1 327 0 7 1485 15374 142 25 14 chr12 117999566 118000000 -3257530 + L1_Mur1 LINE L1 4857 5277 -609 7 1485 8055 152 51 22 chr12 118000000 118001236 -3256294 + Lx3C LINE L1 5278 6551 -425 1 1485 3839 30 5 0 chr12 118001236 118001670 -3255860 - RLTR10C LTR ERVK 0 436 1 2 1485 8055 157 25 9 chr12 118001670 118002084 -3255446 + Lx3C LINE L1 6552 6972 -4 1 1485 284 216 112 47 chr12 118002469 118002576 -3254954 + L1M3 LINE L1 2110 2223 -3920 3 1485 1373 288 164 33 chr12 118002559 118003922 -3253608 + L1M3 LINE L1 2466 4007 -2133 3 1485 218 308 0 0 chr12 118003990 118004042 -3253488 + (CACG)n Simple_repeat Simple_repeat 3 54 0 4 1485 23 0 0 0 chr12 118005435 118005458 -3252072 + AT_rich Low_complexity Low_complexity 1 23 0 5 1485 564 84 0 0 chr12 118007390 118007473 -3250057 + (TG)n Simple_repeat Simple_repeat 1 83 0 6 1485 324 206 0 52 chr12 118007473 118007550 -3249980 - B4A SINE B4 -22 270 198 7 1485 859 239 128 30 chr12 118007554 118007852 -3249678 - ORR1D2 LTR MaLR 0 370 44 8 1485 284 150 50 0 chr12 118011428 118011488 -3246042 - MTEa LTR MaLR -26 353 291 9 1485 365 248 164 20 chr12 118011606 118011758 -3245772 + B3A SINE B2 20 193 -5 1 1485 345 47 0 0 chr12 118012262 118012305 -3245225 + (TTA)n Simple_repeat Simple_repeat 1 43 0 1 1485 261 0 0 0 chr12 118012305 118012334 -3245196 + (TAG)n Simple_repeat Simple_repeat 3 31 0 1 1485 389 316 6 43 chr12 118012341 118012503 -3245027 - RSINE1 SINE B4 -6 159 4 1 1485 207 304 0 42 chr12 118014356 118014400 -3243130 + polypyrimidine Low_complexity Low_complexity 73 116 0 1 1485 679 84 19 9 chr12 118014400 118014508 -3243022 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 1 1485 207 304 0 42 chr12 118014508 118014583 -3242947 + CT-rich Low_complexity Low_complexity 2 72 0 1 1485 1582 156 86 31 chr12 118020757 118021081 -3236449 - ORR1B1 LTR MaLR -25 342 1 1 1485 7098 166 49 28 chr12 118021087 118022559 -3234971 - ORR1B1-int LTR MaLR -6 1503 1 1 1485 1683 185 166 3 chr12 118022559 118022896 -3234634 - ORR1B1 LTR MaLR 0 394 3 1 1485 813 295 38 50 chr12 118023602 118023788 -3233742 + Lx8 LINE L1 7135 7319 -154 1 1485 1460 64 37 0 chr12 118023788 118023975 -3233555 - B2_Mm2 SINE B2 0 195 2 1 1485 813 295 38 50 chr12 118023975 118024130 -3233400 + Lx8 LINE L1 7320 7472 -1 1 1485 641 256 0 0 chr12 118026071 118026200 -3231330 - B1_Mur1 SINE Alu -19 130 2 2 1485 1708 26 0 0 chr12 118026257 118026448 -3231082 - B2_Mm1a SINE B2 -2 191 1 2 1485 2377 164 14 44 chr12 118027250 118027684 -3229846 - MTC LTR MaLR 0 421 1 2 1485 1052 214 26 116 chr12 118027965 118028024 -3229506 - ORR1D2 LTR MaLR -5 365 311 2 1485 365 0 0 0 chr12 118028024 118028066 -3229464 - L1_Mus2 LINE L1 -19 6547 6506 2 1485 1052 214 26 116 chr12 118028066 118028317 -3229213 - ORR1D2 LTR MaLR -60 310 83 2 1485 1422 206 147 130 chr12 118028317 118028841 -3228689 - MT2A LTR ERVL 0 533 1 2 1485 425 88 0 0 chr12 118028841 118028898 -3228632 - MERVL_2A-int LTR ERVL 0 5761 5705 2 1485 271 143 15 45 chr12 118028899 118028965 -3228565 - ORR1D2-int LTR MaLR -1326 637 574 2 1485 3286 156 35 2 chr12 118028974 118029513 -3228017 - MERVL_2A-int LTR ERVL -146 5615 5059 2 1485 1019 167 45 10 chr12 118029516 118029716 -3227814 - URR1A DNA MER1_type -19 207 1 2 1485 3054 177 34 19 chr12 118029716 118030241 -3227289 - MERVL_2A-int LTR ERVL -695 5066 4534 2 1485 7320 161 30 21 chr12 118030234 118031660 -3225870 - MERVL_2A-int LTR ERVL -3531 2230 671 2 1485 1192 242 85 3 chr12 118032155 118032486 -3225044 + MTD LTR MaLR 62 419 0 2 1485 725 294 63 50 chr12 118032490 118032809 -3224721 + ORR1E LTR MaLR 2 324 -35 2 1485 584 328 127 19 chr12 118032808 118033131 -3224399 + MTE-int LTR MaLR 299 656 -924 3 1485 435 285 75 19 chr12 118033186 118033347 -3224183 + B3 SINE B2 1 170 -46 3 1485 1389 331 75 49 chr12 118033421 118034039 -3223491 + MTE-int LTR MaLR 751 1376 -204 3 1485 1844 163 85 6 chr12 118034039 118034379 -3223151 - ORR1B2 LTR MaLR 0 367 1 3 1485 1389 331 75 49 chr12 118034379 118034536 -3222994 + MTE-int LTR MaLR 1377 1546 -34 3 1485 37330 66 1 14 chr12 118034672 118040991 -3216539 - L1Md_F2 LINE L1 0 6582 345 3 1485 604 262 0 109 chr12 118041019 118041177 -3216353 - RSINE1 SINE B4 0 165 27 3 1485 1812 163 102 3 chr12 118041177 118041521 -3216009 - ORR1C1 LTR MaLR 0 378 1 3 1485 604 262 0 109 chr12 118041521 118041546 -3215984 - RSINE1 SINE B4 -139 26 2 3 1485 350 327 75 60 chr12 118041546 118041865 -3215665 + ORR1E LTR MaLR 32 355 -4 3 1485 281 331 90 98 chr12 118048460 118048828 -3208702 - ORR1D2 LTR MaLR 0 370 6 3 1485 8136 52 4 2 chr12 118049135 118050416 -3207114 - L1Md_F2 LINE L1 -8 6574 5295 3 1485 4306 58 0 0 chr12 118050415 118050946 -3206584 + L1Md_F2 LINE L1 4771 5301 -582 3 1485 1251 283 79 53 chr12 118051118 118052166 -3205364 - L1MD1 LINE L1 -311 6322 5238 3 1485 708 19 57 0 chr12 118052166 118052271 -3205259 + L1Md_F3 LINE L1 6473 6583 -1 4 1485 1251 277 94 44 chr12 118052271 118052479 -3205051 - L1MD1 LINE L1 -1300 5237 5035 3 1485 23 0 0 0 chr12 118052540 118052563 -3204967 + AT_rich Low_complexity Low_complexity 1 23 0 4 1485 276 270 8 34 chr12 118053129 118053248 -3204282 - L1MD1 LINE L1 -1925 4612 4497 3 1485 1049 269 81 3 chr12 118054239 118054549 -3202981 + Lx8 LINE L1 6745 7078 -395 4 1485 238 261 21 32 chr12 118054546 118054641 -3202889 - L1MD1 LINE L1 -2367 4170 4077 3 1485 5763 180 33 8 chr12 118054642 118055723 -3201807 - Lx4A LINE L1 -2 7056 5887 4 1485 1024 250 39 7 chr12 118055733 118056043 -3201487 - L1MD1 LINE L1 -2471 4066 3747 3 1485 701 155 8 0 chr12 118056043 118056172 -3201358 + CT-rich Low_complexity Low_complexity 3 132 0 4 1485 302 302 46 28 chr12 118056173 118056282 -3201248 - L1MD1 LINE L1 -2802 3735 3625 3 1485 332 258 41 23 chr12 118056296 118056467 -3201063 - L1MD1 LINE L1 -2998 3539 3366 3 1485 3571 220 56 59 chr12 118056530 118057434 -3200096 + RMER13B LTR ERVK 5 906 -2 4 1485 624 290 143 51 chr12 118057575 118058148 -3199382 - L1MD1 LINE L1 -3402 3135 2510 3 1485 454 251 80 137 chr12 118058542 118058938 -3198592 - L1MD1 LINE L1 -4564 2069 1704 3 1485 2528 92 3 0 chr12 118058938 118059264 -3198266 - ORR1A2 LTR MaLR 0 327 1 4 1485 454 251 80 137 chr12 118059264 118059320 -3198210 - L1MD1 LINE L1 -4930 1703 1643 3 1485 225 0 0 0 chr12 118059370 118059395 -3198135 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1485 742 269 25 30 chr12 118059430 118059629 -3197901 - B3A SINE B2 0 198 1 4 1485 569 298 184 21 chr12 118059629 118060194 -3197336 - L1MD1 LINE L1 -4980 1653 997 3 1485 987 268 54 14 chr12 118060980 118061256 -3196274 - B4 SINE B4 -4 288 2 4 1485 380 352 0 7 chr12 118061799 118061942 -3195588 + (CA)n Simple_repeat Simple_repeat 1 142 0 5 1485 291 122 0 0 chr12 118063511 118063560 -3193970 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1485 308 320 45 32 chr12 118063586 118063741 -3193789 - RSINE1 SINE B4 0 165 9 5 1485 337 179 24 0 chr12 118064437 118064521 -3193009 + (TATG)n Simple_repeat Simple_repeat 2 87 0 5 1485 23 54 0 0 chr12 118064555 118064592 -3192938 + AT_rich Low_complexity Low_complexity 1 37 0 5 1485 192 125 0 0 chr12 118064620 118064652 -3192878 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 1485 264 337 9 67 chr12 118067433 118067538 -3189992 + ID_B1 SINE B4 78 176 -48 5 1485 370 227 11 0 chr12 118067463 118067550 -3189980 + PB1D10 SINE Alu 20 110 -10 5 1485 4146 145 31 15 chr12 118068601 118069345 -3188185 - RMER6A LTR ERVK 0 756 1 5 1485 22 0 0 0 chr12 118069353 118069375 -3188155 + AT_rich Low_complexity Low_complexity 1 22 0 5 1485 350 282 12 12 chr12 118069415 118069501 -3188029 - PB1D7 SINE Alu -31 89 4 6 1485 21 0 0 0 chr12 118069579 118069600 -3187930 + AT_rich Low_complexity Low_complexity 1 21 0 6 1485 1302 46 0 0 chr12 118069867 118070019 -3187511 + L1Md_F2 LINE L1 5435 5586 -297 6 1485 8089 54 6 8 chr12 118070019 118071008 -3186522 + L1Md_F2 LINE L1 5587 6573 -9 6 1485 1043 262 113 27 chr12 118071008 118071451 -3186079 - L1MA8 LINE L1 -402 5889 5409 6 1485 224 286 20 39 chr12 118071496 118071598 -3185932 + CT-rich Low_complexity Low_complexity 3 102 0 6 1485 220 220 0 0 chr12 118071598 118071648 -3185882 - PB1D10 SINE Alu -21 96 47 6 1485 237 108 0 0 chr12 118072006 118072043 -3185487 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1485 266 318 0 12 chr12 118074257 118074343 -3183187 + PB1D10 SINE Alu 26 110 -7 6 1485 604 203 353 71 chr12 118074789 118075028 -3182502 - ORR1D2 LTR MaLR 0 370 62 6 1485 2718 184 68 16 chr12 118075028 118075057 -3182473 - RMER15 LTR ERVL 0 575 542 6 1485 303 96 0 0 chr12 118075057 118075109 -3182421 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1485 2718 184 68 16 chr12 118075109 118075626 -3181904 - RMER15 LTR ERVL -34 541 2 6 1485 604 246 24 112 chr12 118075626 118075692 -3181838 - ORR1D2 LTR MaLR -309 61 4 6 1485 254 0 0 0 chr12 118075845 118075877 -3181653 - RLTR10A LTR ERVK -43 368 337 7 1485 2631 42 31 0 chr12 118075884 118076243 -3181287 - RLTR10A LTR ERVK -41 370 1 7 1485 493 254 8 47 chr12 118078447 118078575 -3178955 + Lx8 LINE L1 7198 7320 -153 7 1485 2166 152 98 18 chr12 118078581 118078970 -3178560 - MTC LTR MaLR -1 420 1 7 1485 226 255 75 150 chr12 118078982 118079102 -3178428 + MT2B LTR ERVL 154 264 -337 7 1485 711 169 8 30 chr12 118079002 118079136 -3178394 + B1_Mur4 SINE Alu 20 150 0 7 1485 332 320 10 0 chr12 118079259 118079356 -3178174 - PB1D10 SINE Alu -9 108 11 7 1485 233 323 85 18 chr12 118082966 118083130 -3174400 + L1M5 LINE L1 5589 5763 -416 7 1485 948 218 48 10 chr12 118083524 118083732 -3173798 + B3 SINE B2 1 216 0 7 1485 354 333 0 28 chr12 118084103 118084211 -3173319 + PB1D10 SINE Alu 1 105 -12 7 1485 279 175 0 0 chr12 118084213 118084270 -3173260 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1485 564 224 0 0 chr12 118084294 118084464 -3173066 + (TG)n Simple_repeat Simple_repeat 1 170 0 8 1485 192 170 0 0 chr12 118084513 118084566 -3172964 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 8 1485 39668 33 8 0 chr12 118085917 118091941 -3165589 - L1Md_T LINE L1 0 6582 511 8 1485 231 331 7 0 chr12 118092461 118092481 -3165049 + polypurine Low_complexity Low_complexity 2 21 0 8 1485 194 57 0 54 chr12 118092481 118092518 -3165012 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 8 1485 231 331 7 0 chr12 118092518 118092645 -3164885 + GA-rich Low_complexity Low_complexity 22 149 0 8 1485 360 0 0 0 chr12 118092650 118092690 -3164840 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1485 431 280 19 6 chr12 118093636 118093794 -3163736 - HAL1-2a_MD LINE L1 -519 2505 2346 8 1485 732 287 62 5 chr12 118095438 118095662 -3161868 + B4A SINE B4 44 280 -12 8 1485 255 61 0 0 chr12 118095692 118095725 -3161805 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 8 1486 1016 247 164 53 chr12 118096386 118097112 -3160418 + L1MB7 LINE L1 5317 6120 -64 9 1486 315 0 0 0 chr12 118099218 118099253 -3158277 + (CCA)n Simple_repeat Simple_repeat 1 35 0 9 1486 292 267 0 0 chr12 118100365 118100425 -3157105 + Lx7 LINE L1 6225 6284 -1412 9 1486 584 253 165 24 chr12 118100732 118100987 -3156543 + B4A SINE B4 2 292 0 9 1486 201 147 0 0 chr12 118101453 118101487 -3156043 + (TGG)n Simple_repeat Simple_repeat 3 36 0 9 1486 435 294 6 34 chr12 118101547 118101723 -3155807 + (ATGGTG)n Simple_repeat Simple_repeat 1 171 0 9 1486 21 36 0 0 chr12 118102678 118102706 -3154824 + AT_rich Low_complexity Low_complexity 1 28 0 9 1486 246 257 13 26 chr12 118103164 118103240 -3154290 - PB1D10 SINE Alu -1 116 42 9 1486 186 215 38 0 chr12 118103300 118103379 -3154151 + (CATA)n Simple_repeat Simple_repeat 4 85 0 9 1486 2258 65 5 126 chr12 118103473 118103845 -3153685 - ORR1A2 LTR MaLR 0 327 1 9 1486 218 271 0 0 chr12 118103892 118103940 -3153590 + PB1D10 SINE Alu 1 48 -69 1 1486 198 0 0 0 chr12 118104044 118104066 -3153464 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1486 420 123 0 0 chr12 118104066 118104139 -3153391 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 1 1486 545 297 31 47 chr12 118104258 118104449 -3153081 - B3A SINE B2 -5 193 6 1 1486 294 29 0 0 chr12 118105298 118105333 -3152197 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1486 194 0 39 0 chr12 118105419 118105445 -3152085 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1486 6085 199 69 30 chr12 118106895 118108671 -3148859 - Lx6 LINE L1 -482 6978 5129 1 1486 1893 195 68 16 chr12 118111371 118111756 -3145774 + MTD LTR MaLR 1 405 -14 1 1486 462 104 0 0 chr12 118113808 118113885 -3143645 - L1Md_F2 LINE L1 0 6582 6506 1 1486 240 353 65 22 chr12 118113959 118114098 -3143432 + MIR SINE MIR 104 248 -14 1 1486 369 0 0 0 chr12 118116487 118116528 -3141002 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1486 249 33 0 0 chr12 118116804 118116834 -3140696 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1486 229 236 39 147 chr12 118118236 118118365 -3139165 + MLT1F-int LTR MaLR 1290 1404 -85 1 1486 183 143 22 87 chr12 118119050 118119096 -3138434 + MER5B DNA MER1_type 86 128 -50 1 1486 460 261 36 0 chr12 118119430 118119541 -3137989 + B1_Mur1 SINE Alu 35 149 0 1 1486 435 298 33 0 chr12 118119572 118119693 -3137837 + PB1 SINE Alu 3 127 0 1 1486 995 228 5 10 chr12 118119844 118120048 -3137482 - B3 SINE B2 -11 205 3 1 1486 423 0 0 0 chr12 118120593 118120640 -3136890 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1486 1405 206 206 3 chr12 118121418 118121768 -3135762 + MTC LTR MaLR 1 421 0 1 1486 1907 208 23 13 chr12 118121768 118122157 -3135373 + MTC-int LTR MaLR 1 393 -865 1 1486 3958 145 54 7 chr12 118122157 118123061 -3134469 - Lx5 LINE L1 -755 6295 5339 1 1486 1958 204 8 0 chr12 118123061 118123418 -3134112 + Lx5 LINE L1 6283 6642 -408 1 1486 276 148 0 0 chr12 118123418 118123479 -3134051 + (A)n Simple_repeat Simple_repeat 1 61 0 1 1486 2007 195 18 7 chr12 118123479 118123859 -3133671 + Lx5 LINE L1 6634 7053 -5 1 1486 3223 219 71 70 chr12 118123885 118124763 -3132767 + MTC-int LTR MaLR 380 1258 0 1 1486 1160 226 118 7 chr12 118124763 118125035 -3132495 + MTC LTR MaLR 1 302 -119 1 1486 414 316 9 0 chr12 118125519 118125633 -3131897 - MLT1B LTR MaLR -21 369 255 1 1486 504 0 0 0 chr12 118126626 118126682 -3130848 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1486 378 0 0 0 chr12 118128435 118128477 -3129053 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1486 1181 308 86 31 chr12 118129937 118130286 -3127244 + MTEa LTR MaLR 12 379 0 1 1486 270 194 0 0 chr12 118132634 118132696 -3124834 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 1 1486 252 312 83 31 chr12 118134309 118134405 -3123125 + PB1D9 SINE Alu 9 109 -11 1 1486 309 51 0 0 chr12 118134410 118134449 -3123081 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1486 214 167 0 0 chr12 118134571 118134613 -3122917 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1486 313 354 126 5 chr12 118135096 118135303 -3122227 - MER82 DNA MER2_type -413 240 9 1 1486 1160 252 66 25 chr12 118135536 118135853 -3121677 - Lx8 LINE L1 -263 7210 6881 1 1486 627 14 0 0 chr12 118137181 118137253 -3120277 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 1 1486 198 150 0 0 chr12 118139202 118139242 -3118288 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1486 357 310 0 0 chr12 118139555 118139713 -3117817 + (CA)n Simple_repeat Simple_repeat 1 158 0 1 1486 778 162 6 6 chr12 118142384 118142564 -3114966 + CT-rich Low_complexity Low_complexity 1 180 0 1 1486 388 289 133 0 chr12 118142738 118142866 -3114664 - Lx8 LINE L1 -181 7292 7148 1 1486 218 283 19 0 chr12 118143262 118143315 -3114215 - L2 LINE L2 -562 2857 2804 1 1486 2087 116 8 134 chr12 118143739 118144208 -3113322 - RMER17C LTR ERVK 0 410 1 1 1486 309 271 35 23 chr12 118144554 118144641 -3112889 + ORR1E LTR MaLR 268 355 -4 1 1486 1533 148 12 8 chr12 118144738 118144984 -3112546 + MTD LTR MaLR 1 247 -172 1 1486 405 0 0 0 chr12 118145310 118145355 -3112175 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1486 699 122 0 0 chr12 118145355 118145486 -3112044 + (GA)n Simple_repeat Simple_repeat 2 132 0 1 1486 5511 71 7 0 chr12 118148154 118148856 -3108674 + L1_Mus1 LINE L1 5861 6567 0 1 1486 446 248 0 134 chr12 118149726 118149875 -3107655 + MT2A LTR ERVL 1 129 -404 1 1486 1775 144 4 0 chr12 118149912 118150175 -3107355 - RMER1B Other Other -321 745 482 1 1486 185 337 23 11 chr12 118150944 118151031 -3106499 + L4 LINE RTE 1757 1844 -185 1 1486 1480 176 65 9 chr12 118151230 118151527 -3106003 - ORR1C2 LTR MaLR -4 380 19 1 1486 969 270 25 67 chr12 118152311 118152979 -3104551 - RLTR18B LTR ERVK -26 590 1 1 1486 1823 144 15 144 chr12 118154388 118154859 -3102671 - RMER17C LTR ERVK 0 410 1 1 1486 1868 154 73 3 chr12 118155917 118156106 -3101424 - RMER17C LTR ERVK 0 410 212 1 1486 406 45 60 0 chr12 118156106 118156173 -3101357 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 1 1486 1868 154 73 3 chr12 118156173 118156354 -3101176 - RMER17C LTR ERVK -199 211 15 1 1486 243 0 0 0 chr12 118158980 118159007 -3098523 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1486 22 0 0 0 chr12 118159908 118159930 -3097600 + AT_rich Low_complexity Low_complexity 1 22 0 1 1486 480 264 56 12 chr12 118160987 118161148 -3096382 - HAL1-2a_MD LINE L1 -531 2493 2326 1 1486 384 308 6 39 chr12 118161190 118161369 -3096161 + (ATGGTG)n Simple_repeat Simple_repeat 2 174 0 1 1486 287 172 190 0 chr12 118162943 118163001 -3094529 - ID4_ SINE ID -13 70 2 1 1486 473 220 85 0 chr12 118163038 118163156 -3094374 - B1F SINE Alu -17 132 5 1 1486 320 348 139 24 chr12 118163992 118164201 -3093329 + Tigger5 DNA MER2_type 15 247 -2159 1 1486 316 266 0 15 chr12 118166716 118166781 -3090749 + B4 SINE B4 224 287 -5 1 1486 262 270 13 51 chr12 118167399 118167477 -3090053 - RMER16 LTR ERVK -229 304 230 1 1486 21 0 0 0 chr12 118168449 118168470 -3089060 + AT_rich Low_complexity Low_complexity 1 21 0 1 1486 21 36 0 0 chr12 118168762 118168790 -3088740 + AT_rich Low_complexity Low_complexity 1 28 0 1 1486 395 211 63 0 chr12 118169440 118169535 -3087995 - MER2 DNA MER2_type -158 187 87 1 1486 1276 120 16 0 chr12 118170221 118170412 -3087118 + B2_Mm2 SINE B2 2 195 0 1 1486 3211 226 30 66 chr12 118171020 118171618 -3085912 - MYSERV-int LTR ERVK -189 6361 5785 1 1486 1177 74 0 0 chr12 118171618 118171766 -3085764 - B1_Mus1 SINE Alu 0 148 1 1 1486 3211 226 30 66 chr12 118171766 118172229 -3085301 - MYSERV-int LTR ERVK -766 5784 5338 1 1486 557 183 33 128 chr12 118172230 118172467 -3085063 - RMER4A LTR ERVK -28 557 239 1 1486 1818 270 35 42 chr12 118172467 118173035 -3084495 - MYSERV-int LTR ERVK -1462 5088 4525 1 1486 3364 243 33 18 chr12 118173116 118173911 -3083619 - MurERV4-int LTR ERVK -3534 1726 920 1 1486 7135 67 11 16 chr12 118174277 118175220 -3082310 + L1_Mus3 LINE L1 5701 6638 0 1 1486 1406 195 11 42 chr12 118175606 118175890 -3081640 + MTD LTR MaLR 145 419 0 1 1486 342 0 0 0 chr12 118176786 118176824 -3080706 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1486 417 20 0 0 chr12 118176998 118177048 -3080482 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1486 834 288 85 15 chr12 118177835 118178177 -3079353 - RMER5 LTR ERV1 -7 527 162 1 1486 417 212 10 48 chr12 118178178 118178282 -3079248 - ORR1D2 LTR MaLR -5 365 266 1 1486 429 250 9 37 chr12 118178335 118178443 -3079087 - RMER5 LTR ERV1 -397 137 33 1 1486 355 154 100 25 chr12 118180342 118180422 -3077108 - L1MCa LINE L1 -4522 1986 1901 1 1486 263 333 11 0 chr12 118181140 118181233 -3076297 + (CA)n Simple_repeat Simple_repeat 2 95 0 1 1486 22 0 0 0 chr12 118181236 118181258 -3076272 + AT_rich Low_complexity Low_complexity 1 22 0 1 1486 321 384 46 18 chr12 118181441 118181722 -3075808 - MLT1B LTR MaLR -30 360 72 1 1486 369 184 86 22 chr12 118182121 118182260 -3075270 + (TAGA)n Simple_repeat Simple_repeat 2 149 0 1 1486 489 62 0 0 chr12 118182260 118182325 -3075205 + (ATATG)n Simple_repeat Simple_repeat 3 67 0 1 1486 457 344 83 5 chr12 118183091 118183307 -3074223 + MER2 DNA MER2_type 113 345 0 1 1486 198 0 0 0 chr12 118186786 118186808 -3070722 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1486 207 0 0 0 chr12 118186872 118186895 -3070635 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 1 1486 214 163 47 0 chr12 118186975 118187018 -3070512 + GA-rich Low_complexity Low_complexity 1 45 0 1 1486 443 48 16 0 chr12 118187018 118187080 -3070450 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1486 402 21 0 0 chr12 118187080 118187126 -3070404 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1486 696 12 0 0 chr12 118187247 118187328 -3070202 + (CACAG)n Simple_repeat Simple_repeat 1 81 0 1 1486 384 309 17 23 chr12 118187814 118187986 -3069544 + CT-rich Low_complexity Low_complexity 3 173 0 1 1486 195 263 25 38 chr12 118188672 118188751 -3068779 + MIR3 SINE MIR 1 78 -130 1 1486 1307 84 9 0 chr12 118189925 118190148 -3067382 + (CA)n Simple_repeat Simple_repeat 1 224 0 1 1486 429 301 157 5 chr12 118191619 118191829 -3065701 - MER2 DNA MER2_type -10 335 94 1 1486 628 368 39 7 chr12 118191891 118192170 -3065360 - B4A SINE B4 -2 290 3 1 1486 226 290 29 14 chr12 118192171 118192241 -3065289 - MER2 DNA MER2_type -269 76 6 1 1486 254 270 16 0 chr12 118193677 118193740 -3063790 + RLTR19C LTR ERVK 34 97 -409 1 1486 286 344 69 53 chr12 118194416 118194794 -3062736 - MER52-int LTR ERV1 -2029 5062 4679 1 1486 2659 185 139 29 chr12 118194991 118195653 -3061877 + RMER19A LTR ERVK 3 737 0 1 1486 372 43 0 0 chr12 118197662 118197708 -3059822 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1 1486 326 276 81 10 chr12 118197873 118197972 -3059558 - MER5A DNA MER1_type -27 162 57 1 1486 335 291 95 37 chr12 118198130 118198319 -3059211 - MLT1F1 LTR MaLR 0 624 425 1 1486 367 364 91 38 chr12 118198315 118198578 -3058952 - MLT1F1 LTR MaLR -275 294 18 1 1486 305 275 63 63 chr12 118198839 118199029 -3058501 + HAL1-2a_MD LINE L1 2326 2515 -509 1 1486 180 200 0 0 chr12 118199055 118199100 -3058430 + (CACCAT)n Simple_repeat Simple_repeat 1 45 0 1 1486 599 186 31 31 chr12 118199110 118199271 -3058259 + HAL1-2a_MD LINE L1 2345 2505 -519 2 1486 332 246 0 0 chr12 118199732 118199793 -3057737 + MTEb LTR MaLR 49 109 -270 2 1486 228 136 67 22 chr12 118199911 118199956 -3057574 + MTEa LTR MaLR 321 367 -12 2 1486 580 296 50 48 chr12 118202191 118202517 -3055013 + MTEa LTR MaLR 18 379 0 2 1486 1109 149 124 0 chr12 118203047 118203248 -3054282 - URR1A DNA MER1_type 0 226 1 2 1486 198 0 0 0 chr12 118203874 118203896 -3053634 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1486 416 297 157 61 chr12 118203907 118204054 -3053476 - RSINE1 SINE B4 -1 164 4 2 1486 407 303 102 30 chr12 118204082 118204287 -3053243 + B3A SINE B2 1 215 -1 2 1486 318 357 93 6 chr12 118205550 118205722 -3051808 + Tigger7 DNA MER2_type 2289 2475 -16 2 1486 1317 257 60 36 chr12 118206655 118207039 -3050491 - MTD LTR MaLR -1 418 26 2 1486 202 250 0 0 chr12 118207652 118207696 -3049834 + T-rich Low_complexity Low_complexity 1 44 0 2 1486 182 322 76 38 chr12 118209547 118209705 -3047825 - MER5B DNA MER1_type -1 177 14 2 1486 198 384 47 16 chr12 118209577 118209704 -3047826 + MER5A DNA MER1_type 45 175 -14 2 1486 368 151 0 27 chr12 118211153 118211228 -3046302 + Lx LINE L1 6581 6653 -1 2 1486 339 321 107 87 chr12 118211502 118211802 -3045728 + L1M5 LINE L1 2267 2572 -3574 2 1486 193 57 0 54 chr12 118212234 118212271 -3045259 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1486 624 177 26 0 chr12 118212359 118212472 -3045058 + URR1B DNA MER1_type 110 225 0 2 1486 248 300 109 48 chr12 118212472 118212505 -3045025 - CYRA11_Mm Unknown Y-chromosome -329 287 133 2 1486 465 46 0 71 chr12 118212532 118212602 -3044928 - Lx3_Mus LINE L1 -779 6230 6166 2 1486 7019 73 19 2 chr12 118212601 118213545 -3043985 + Lx3_Mus LINE L1 4959 5915 -1094 2 1486 438 20 0 0 chr12 118213545 118213596 -3043934 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 2 1486 3856 90 59 7 chr12 118213596 118213714 -3043816 + Lx3_Mus LINE L1 5916 6033 -976 2 1486 462 36 0 0 chr12 118213714 118213770 -3043760 + (GGGA)n Simple_repeat Simple_repeat 1 56 0 2 1486 3856 90 59 7 chr12 118213770 118213898 -3043632 + Lx3_Mus LINE L1 6034 6172 -837 2 1486 277 288 76 41 chr12 118214343 118214488 -3043042 - MIR3 SINE MIR -54 154 5 2 1486 414 273 118 1 chr12 118215086 118215321 -3042209 - L1M3 LINE L1 -714 5469 5212 2 1486 346 269 21 74 chr12 118215346 118215520 -3042010 - MTEa LTR MaLR 0 379 211 2 1486 774 288 64 11 chr12 118215900 118216258 -3041272 - L1M3 LINE L1 -2126 4014 3638 2 1486 225 231 0 71 chr12 118217714 118217784 -3039746 + Tigger12 DNA MER2_type 900 964 -995 2 1486 288 163 41 52 chr12 118218758 118218842 -3038688 + T-rich Low_complexity Low_complexity 16 98 0 2 1486 1212 47 0 20 chr12 118218842 118218993 -3038537 - B1_Mus1 SINE Alu 0 148 1 2 1486 288 163 41 52 chr12 118218993 118219005 -3038525 + T-rich Low_complexity Low_complexity 4 15 0 2 1486 211 237 60 17 chr12 118219256 118219372 -3038158 + (CATA)n Simple_repeat Simple_repeat 1 121 0 2 1486 1196 173 130 0 chr12 118219372 118219603 -3037927 + ORR1C2 LTR MaLR 1 261 -123 2 1486 846 164 68 32 chr12 118220049 118220232 -3037298 + ORR1C2 LTR MaLR 217 384 0 2 1486 189 0 0 0 chr12 118220251 118220272 -3037258 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1486 301 265 41 29 chr12 118220306 118220477 -3037053 + (CATA)n Simple_repeat Simple_repeat 4 176 0 2 1486 540 0 0 0 chr12 118221215 118221275 -3036255 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1486 396 0 0 0 chr12 118221275 118221318 -3036212 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1486 745 113 0 14 chr12 118222396 118222539 -3034991 + (TC)n Simple_repeat Simple_repeat 2 142 0 2 1486 492 210 8 8 chr12 118222586 118222960 -3034570 + CT-rich Low_complexity Low_complexity 1 374 0 2 1486 272 167 33 40 chr12 118222970 118223120 -3034410 + (TCTG)n Simple_repeat Simple_repeat 2 150 0 2 1486 180 317 29 38 chr12 118223353 118223458 -3034072 - MER5B DNA MER1_type -70 108 5 2 1486 288 0 0 0 chr12 118223592 118223624 -3033906 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1486 390 334 138 11 chr12 118224878 118225226 -3032304 - L1M4c LINE L1 -4650 1734 1343 2 1486 800 55 9 0 chr12 118225497 118225607 -3031923 + (TC)n Simple_repeat Simple_repeat 1 111 0 2 1486 342 0 0 0 chr12 118225607 118225645 -3031885 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1486 360 0 0 0 chr12 118226307 118226347 -3031183 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1486 630 254 43 0 chr12 118226356 118226494 -3031036 - RSINE1 SINE B4 -20 145 2 2 1487 198 0 0 0 chr12 118228300 118228322 -3029208 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1487 432 0 0 0 chr12 118228322 118228369 -3029161 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1487 196 224 51 17 chr12 118228887 118228946 -3028584 - L2c LINE L2 -221 3166 3106 2 1487 1315 250 94 3 chr12 118229710 118230071 -3027459 + MTD LTR MaLR 26 419 0 2 1487 183 156 0 0 chr12 118230296 118230328 -3027202 + G-rich Low_complexity Low_complexity 6 37 0 2 1487 516 32 0 0 chr12 118230355 118230417 -3027113 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1487 200 0 100 0 chr12 118230816 118230856 -3026674 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1487 295 292 0 53 chr12 118230862 118230945 -3026585 + RSINE1 SINE B4 35 112 -53 2 1487 564 15 0 0 chr12 118230945 118231010 -3026520 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1487 342 294 28 75 chr12 118231302 118231556 -3025974 + L1MC4 LINE L1 7801 8042 0 2 1487 2390 97 15 3 chr12 118231773 118232115 -3025415 - ORR1A1 LTR MaLR 0 346 1 2 1487 192 97 0 0 chr12 118233183 118233214 -3024316 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1487 496 187 8 8 chr12 118233213 118233337 -3024193 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1487 1012 240 141 37 chr12 118233342 118233640 -3023890 - MTEa LTR MaLR -46 333 5 2 1487 23877 153 67 16 chr12 118233857 118237327 -3020203 - Lx5 LINE L1 -10 7040 3258 2 1487 486 0 0 0 chr12 118237327 118237381 -3020149 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1487 23877 142 102 13 chr12 118237381 118239656 -3017874 - Lx5 LINE L1 -2620 3257 892 2 1487 2047 269 68 21 chr12 118239703 118240450 -3017080 - L1MC2 LINE L1 -11 6333 5552 2 1487 186 128 0 0 chr12 118240499 118240538 -3016992 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1487 342 254 184 10 chr12 118240675 118240882 -3016648 - L1MC2 LINE L1 -944 5202 4960 2 1487 1105 238 5 0 chr12 118240923 118241137 -3016393 - B3 SINE B2 -1 215 1 2 1487 284 0 0 27 chr12 118241165 118241202 -3016328 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1487 397 292 99 46 chr12 118241288 118241439 -3016091 + Lx8 LINE L1 7156 7314 -159 2 1487 24 32 0 0 chr12 118241451 118241482 -3016048 + AT_rich Low_complexity Low_complexity 1 31 0 2 1487 375 288 0 43 chr12 118242652 118242790 -3014740 - RMER30 DNA MER1_type -70 132 1 2 1487 1021 204 53 29 chr12 118243456 118243663 -3013867 - B3 SINE B2 -3 213 2 2 1487 1793 128 6 152 chr12 118247459 118247939 -3009591 - RMER17C LTR ERVK 0 410 1 2 1487 773 283 61 49 chr12 118248812 118249076 -3008454 + B4A SINE B4 26 292 0 2 1487 1038 265 109 13 chr12 118251238 118251695 -3005835 - RCHARR1 DNA MER1_type 0 974 474 2 1487 1154 306 154 31 chr12 118251721 118252499 -3005031 - Lx8 LINE L1 -28 7445 6572 2 1487 1748 240 72 21 chr12 118252500 118252973 -3004557 - RCHARR1 DNA MER1_type -477 497 1 2 1487 528 257 0 0 chr12 118252999 118253112 -3004418 + B1_Mur3 SINE Alu 37 149 0 2 1487 391 282 81 51 chr12 118253396 118253631 -3003899 - Zaphod DNA Tip100 -3186 845 604 2 1487 333 368 117 9 chr12 118253648 118253862 -3003668 + MER44B DNA MER2_type 1 237 -313 2 1487 235 313 86 46 chr12 118254131 118254305 -3003225 - Zaphod DNA Tip100 -3509 522 342 2 1487 327 210 22 28 chr12 118255060 118255241 -3002289 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1487 23 33 0 0 chr12 118256078 118256108 -3001422 + AT_rich Low_complexity Low_complexity 1 30 0 2 1487 600 194 0 0 chr12 118258871 118259010 -2998520 + CT-rich Low_complexity Low_complexity 2 140 0 2 1487 180 264 19 0 chr12 118260962 118261015 -2996515 - MIRc SINE MIR -27 241 188 2 1487 297 128 0 0 chr12 118263789 118263836 -2993694 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1487 633 299 6 24 chr12 118264928 118265096 -2992434 + RSINE1 SINE B4 1 165 0 2 1487 280 306 8 85 chr12 118268930 118269048 -2988482 + MTEa LTR MaLR 1 109 -270 2 1487 322 286 10 30 chr12 118269241 118269342 -2988188 + MTEa LTR MaLR 281 379 0 2 1487 381 294 163 37 chr12 118270115 118270420 -2987110 - MLT1B LTR MaLR -44 346 4 2 1487 357 366 0 22 chr12 118271641 118271867 -2985663 + (TG)n Simple_repeat Simple_repeat 1 220 0 2 1487 225 354 14 20 chr12 118271814 118271961 -2985569 + (TATG)n Simple_repeat Simple_repeat 2 147 0 2 1487 270 0 0 0 chr12 118273649 118273679 -2983851 + (GGAA)n Simple_repeat Simple_repeat 2 31 0 2 1487 707 283 58 5 chr12 118274837 118275043 -2982487 + ID_B1 SINE B4 6 222 -2 2 1487 1567 302 72 7 chr12 118275198 118275742 -2981788 - Tigger7 DNA MER2_type -1891 600 22 2 1487 339 342 7 20 chr12 118276169 118276321 -2981209 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 2 1487 251 268 128 90 chr12 118277582 118277738 -2979792 + RLTR21 LTR ERVK 1082 1243 -329 2 1487 425 271 146 59 chr12 118278978 118279300 -2978230 + ORR1D2 LTR MaLR 6 355 -15 2 1487 515 262 117 106 chr12 118279993 118280334 -2977196 - MLT1B LTR MaLR -45 345 1 2 1487 262 246 42 89 chr12 118281551 118281687 -2975843 + MLT1C LTR MaLR 53 187 -203 2 1487 293 250 0 30 chr12 118281715 118281880 -2975650 + (TATATG)n Simple_repeat Simple_repeat 6 165 0 2 1487 267 160 26 13 chr12 118281920 118281996 -2975534 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1487 191 241 96 117 chr12 118282508 118282602 -2974928 - L4 LINE RTE -1700 329 238 2 1487 3453 20 8 0 chr12 118283766 118284157 -2973373 - MTA_Mm LTR MaLR -2 394 1 2 1487 33 25 0 0 chr12 118285518 118285558 -2971972 + AT_rich Low_complexity Low_complexity 1 40 0 2 1487 261 119 0 0 chr12 118286916 118286958 -2970572 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1487 29 28 0 0 chr12 118286988 118287024 -2970506 + AT_rich Low_complexity Low_complexity 1 36 0 3 1487 1172 62 14 0 chr12 118287155 118287300 -2970230 + B1_Mm SINE Alu 1 147 0 3 1487 712 210 65 0 chr12 118289763 118289901 -2967629 - RSINE1 SINE B4 -14 151 5 3 1487 240 35 0 0 chr12 118293360 118293389 -2964141 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1487 313 187 53 0 chr12 118294417 118294492 -2963038 - L1M6 LINE L1 -5285 1211 1133 3 1487 253 225 85 53 chr12 118296194 118296288 -2961242 - L1M3e LINE L1 -5768 1262 1166 3 1487 192 182 0 0 chr12 118297745 118297789 -2959741 + (CTCG)n Simple_repeat Simple_repeat 2 45 0 3 1487 203 255 0 19 chr12 118297820 118297872 -2959658 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1487 276 283 163 44 chr12 118297873 118298112 -2959418 - B4A SINE B4 0 292 51 3 1487 230 288 0 0 chr12 118298357 118298416 -2959114 - L1MC4 LINE L1 -726 7316 7258 3 1487 375 23 0 0 chr12 118298723 118298767 -2958763 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1487 599 327 89 52 chr12 118299564 118299912 -2957618 - MLT1J LTR MaLR -30 482 122 3 1487 1916 50 16 8 chr12 118300687 118300930 -2956600 + MTB LTR MaLR 1 245 -155 3 1487 180 0 0 0 chr12 118300958 118300978 -2956552 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1487 297 0 0 0 chr12 118300978 118301010 -2956520 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1487 252 0 0 0 chr12 118301036 118301064 -2956466 + (CAGA)n Simple_repeat Simple_repeat 4 31 0 3 1487 269 314 22 55 chr12 118301300 118301391 -2956139 + PB1D10 SINE Alu 1 88 -29 3 1487 211 277 0 0 chr12 118301424 118301471 -2956059 + GA-rich Low_complexity Low_complexity 2 48 0 3 1487 1963 119 133 12 chr12 118301669 118301993 -2955537 + ORR1B2 LTR MaLR 5 367 0 3 1487 537 16 0 0 chr12 118302402 118302464 -2955066 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1487 402 21 0 0 chr12 118302464 118302510 -2955020 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1487 417 172 0 0 chr12 118302907 118303000 -2954530 + (TG)n Simple_repeat Simple_repeat 1 93 0 3 1487 583 274 82 87 chr12 118303108 118303476 -2954054 + RLTR12B LTR ERVK 132 497 -31 3 1487 40938 24 2 6 chr12 118304226 118310616 -2946914 - L1Md_T LINE L1 0 6582 222 3 1487 8883 63 12 3 chr12 118310714 118312527 -2945003 - L1Md_F2 LINE L1 0 6582 4753 3 1487 8546 66 10 0 chr12 118312528 118313640 -2943890 + L1Md_F2 LINE L1 3620 4742 -1141 3 1487 5299 50 0 3 chr12 118314394 118315039 -2942491 + L1Md_F2 LINE L1 5940 6582 0 3 1487 337 95 0 31 chr12 118315533 118315598 -2941932 + (TCCCC)n Simple_repeat Simple_repeat 3 65 0 3 1487 612 0 0 0 chr12 118315598 118315666 -2941864 + (TTTC)n Simple_repeat Simple_repeat 3 70 0 3 1487 221 0 0 33 chr12 118317145 118317175 -2940355 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1487 264 260 0 115 chr12 118317199 118317286 -2940244 - PB1D7 SINE Alu -1 119 43 3 1487 1945 238 14 10 chr12 118318999 118319414 -2938116 - MTD LTR MaLR -2 417 1 3 1487 491 0 0 17 chr12 118319585 118319645 -2937885 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1487 315 275 19 10 chr12 118320482 118320802 -2936728 + (TA)n Simple_repeat Simple_repeat 1 323 0 3 1487 548 280 290 36 chr12 118320803 118321103 -2936427 - MTEa LTR MaLR 0 379 4 3 1487 455 320 0 22 chr12 118321140 118321385 -2936145 + (CATATA)n Simple_repeat Simple_repeat 1 239 0 3 1487 438 352 44 48 chr12 118321510 118321716 -2935814 - MTEa LTR MaLR -151 228 24 3 1487 216 216 0 0 chr12 118322094 118322145 -2935385 + (CATA)n Simple_repeat Simple_repeat 1 51 0 3 1487 251 304 17 34 chr12 118322151 118322270 -2935260 + (CATATA)n Simple_repeat Simple_repeat 3 119 0 3 1487 396 0 0 0 chr12 118323710 118323754 -2933776 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1487 398 248 73 9 chr12 118324070 118324180 -2933350 - ORR1D1 LTR MaLR 0 374 258 3 1487 396 0 0 0 chr12 118324181 118324225 -2933305 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1487 884 173 0 0 chr12 118324237 118324393 -2933137 - ORR1D1 LTR MaLR -215 159 4 3 1487 225 0 0 0 chr12 118325164 118325189 -2932341 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1487 273 57 0 0 chr12 118325191 118325226 -2932304 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 1487 381 316 105 44 chr12 118325227 118325455 -2932075 + L1MA8 LINE L1 4750 4991 -1152 3 1487 304 301 8 16 chr12 118325829 118325969 -2931561 + L1MA8 LINE L1 5259 5397 -792 3 1487 753 299 81 72 chr12 118325975 118326335 -2931195 - ORR1D2 LTR MaLR -7 363 1 3 1487 1016 289 87 29 chr12 118326337 118326937 -2930593 + L1MA8 LINE L1 5400 6050 -118 3 1487 181 262 129 16 chr12 118328313 118328375 -2929155 + L3 LINE CR1 2433 2501 -1988 3 1487 194 0 0 37 chr12 118331177 118331204 -2926326 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1487 282 326 32 0 chr12 118331746 118331841 -2925689 + Tigger5 DNA MER2_type 38 135 -2271 3 1487 333 62 0 0 chr12 118333359 118333407 -2924123 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1487 952 287 44 15 chr12 118338280 118338552 -2918978 + B4A SINE B4 3 282 -10 3 1487 441 0 0 0 chr12 118338564 118338613 -2918917 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1487 459 0 0 0 chr12 118338613 118338664 -2918866 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1487 1392 197 133 9 chr12 118339333 118339656 -2917874 + ORR1D1 LTR MaLR 4 366 -8 3 1487 387 83 0 0 chr12 118340956 118341016 -2916514 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1487 410 162 12 48 chr12 118342723 118342807 -2914723 + ID4 SINE ID 1 81 -2 3 1487 3593 15 2 0 chr12 118343121 118343516 -2914014 - MTA_Mm LTR MaLR 0 396 1 3 1487 360 0 0 0 chr12 118347037 118347077 -2910453 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1487 669 244 114 26 chr12 118348879 118349112 -2908418 - ORR1E LTR MaLR -84 295 6 3 1487 418 289 134 12 chr12 118349150 118349363 -2908167 - L1M3 LINE L1 -399 5772 5540 3 1487 1200 65 0 0 chr12 118352869 118353022 -2904508 + B2_Mm2 SINE B2 1 153 -42 3 1487 225 0 0 0 chr12 118353022 118353047 -2904483 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 1487 1002 149 12 18 chr12 118353047 118353064 -2904466 + B2_Mm1t SINE B2 154 170 -23 3 1487 257 214 0 0 chr12 118353134 118353176 -2904354 + PB1D10 SINE Alu 45 86 -31 3 1487 227 283 9 66 chr12 118354956 118355062 -2902468 + MLT1A1 LTR MaLR 293 392 -16 3 1487 2114 126 12 6 chr12 118356772 118357099 -2900431 - ORR1A4 LTR MaLR 0 329 1 3 1487 413 110 0 14 chr12 118357580 118357654 -2899876 + (GGGGA)n Simple_repeat Simple_repeat 4 76 0 3 1488 837 211 83 0 chr12 118358437 118358617 -2898913 + B3 SINE B2 8 202 -14 3 1488 1137 235 136 16 chr12 118359910 118360148 -2897382 + ORR1D2 LTR MaLR 17 289 -81 3 1488 1252 169 52 0 chr12 118360148 118360361 -2897169 - URR1A DNA MER1_type -2 224 1 3 1488 1137 235 136 16 chr12 118360361 118360438 -2897092 + ORR1D2 LTR MaLR 290 369 -1 3 1488 878 254 34 5 chr12 118361906 118362112 -2895418 + B3 SINE B2 2 213 -3 3 1488 682 167 17 39 chr12 118362573 118362754 -2894776 + GA-rich Low_complexity Low_complexity 2 178 0 3 1488 1398 249 30 0 chr12 118362789 118363086 -2894444 - MTE2b LTR MaLR -73 306 1 3 1488 294 29 0 0 chr12 118364888 118364923 -2892607 + (CTAA)n Simple_repeat Simple_repeat 3 37 0 3 1488 1089 55 0 0 chr12 118364924 118365069 -2892461 + (TC)n Simple_repeat Simple_repeat 1 145 0 3 1488 189 0 0 0 chr12 118365069 118365089 -2892441 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1488 896 295 106 60 chr12 118367806 118368486 -2889044 - L1MB3 LINE L1 -93 6090 5348 3 1488 414 0 0 0 chr12 118368486 118368532 -2888998 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1488 793 295 142 51 chr12 118368532 118368561 -2888969 - L1MB3 LINE L1 -824 5347 5319 3 1488 309 197 0 0 chr12 118368569 118368635 -2888895 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1488 399 326 51 0 chr12 118368705 118368901 -2888629 - L1M4 LINE L1 -984 5162 4957 3 1488 1288 276 68 39 chr12 118368907 118369496 -2888034 - Charlie21a DNA MER1_type -13 1200 595 3 1488 189 265 145 14 chr12 118370379 118370448 -2887082 - L2 LINE L2 -2864 555 478 3 1488 191 299 119 63 chr12 118370486 118370629 -2886901 + L2a LINE L2 3275 3425 -1 3 1488 396 0 0 0 chr12 118371074 118371118 -2886412 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1488 540 331 122 26 chr12 118371358 118371783 -2885747 - MLT1C LTR MaLR 0 467 2 3 1488 234 287 28 148 chr12 118372045 118372178 -2885352 + L2a LINE L2 3223 3412 -10 3 1488 244 154 0 0 chr12 118372178 118372217 -2885313 + MIR SINE MIR 216 254 -8 3 1488 202 279 0 0 chr12 118376759 118376802 -2880728 + L3 LINE CR1 3152 3194 -1295 3 1488 2311 103 19 12 chr12 118377470 118377795 -2879735 - ORR1A2 LTR MaLR 0 327 1 3 1488 345 333 110 10 chr12 118377855 118378055 -2879475 - MLT1B LTR MaLR -158 232 13 3 1488 230 27 81 0 chr12 118380471 118380508 -2877022 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1488 321 292 50 30 chr12 118380508 118380607 -2876923 + RSINE1 SINE B4 34 134 -31 3 1488 918 241 78 0 chr12 118380701 118380892 -2876638 + ID_B1 SINE B4 13 218 -6 3 1488 708 268 32 11 chr12 118380921 118381106 -2876424 + B3A SINE B2 10 198 0 3 1488 227 250 33 77 chr12 118381944 118382035 -2875495 - MER73 LTR ERVL -8 636 550 3 1488 2408 159 46 18 chr12 118383318 118383771 -2873759 - RMER4A LTR ERVK 0 466 1 3 1488 894 94 0 30 chr12 118383771 118383903 -2873627 - MurERV4-int LTR ERVK 0 5260 5133 3 1488 1532 129 13 0 chr12 118383892 118384116 -2873414 - MurERV4-int LTR ERVK -3135 2125 1899 3 1488 180 77 0 0 chr12 118384619 118384645 -2872885 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1488 1439 263 118 12 chr12 118384753 118385091 -2872439 - Tigger7 DNA MER2_type -2014 477 105 3 1488 369 0 0 0 chr12 118385091 118385132 -2872398 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1488 1439 263 118 12 chr12 118385132 118385209 -2872321 - Tigger7 DNA MER2_type -2387 104 20 3 1488 866 76 15 0 chr12 118386619 118386750 -2870780 + (CAGAGA)n Simple_repeat Simple_repeat 4 136 0 3 1488 212 221 341 11 chr12 118387365 118387456 -2870074 - RSINE1 SINE B4 -34 131 11 3 1488 22 35 0 0 chr12 118388156 118388185 -2869345 + AT_rich Low_complexity Low_complexity 1 29 0 4 1488 249 159 0 0 chr12 118390134 118390178 -2867352 + GA-rich Low_complexity Low_complexity 1 44 0 4 1488 203 242 16 0 chr12 118390558 118390620 -2866910 + (GGGTG)n Simple_repeat Simple_repeat 4 66 0 4 1488 180 97 0 0 chr12 118392088 118392119 -2865411 + (GAAA)n Simple_repeat Simple_repeat 1 31 0 4 1488 27 62 0 0 chr12 118392286 118392334 -2865196 + GC_rich Low_complexity Low_complexity 1 48 0 4 1488 24 0 0 0 chr12 118392340 118392364 -2865166 + GC_rich Low_complexity Low_complexity 1 24 0 4 1488 392 256 0 0 chr12 118402687 118402765 -2854765 + RSINE1 SINE B4 65 142 -23 4 1488 299 223 36 0 chr12 118403705 118403817 -2853713 + GA-rich Low_complexity Low_complexity 1 116 0 4 1488 572 308 13 19 chr12 118403817 118403976 -2853554 - B3A SINE B2 -17 181 24 4 1488 1580 43 0 0 chr12 118404005 118404189 -2853341 - B2_Mm1a SINE B2 -7 186 3 4 1488 300 53 0 0 chr12 118404208 118404246 -2853284 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1488 252 77 0 0 chr12 118409242 118409281 -2848249 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 1488 355 138 0 41 chr12 118409286 118409384 -2848146 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 4 1488 510 168 0 0 chr12 118409378 118409491 -2848039 + CT-rich Low_complexity Low_complexity 4 116 0 4 1488 393 260 57 9 chr12 118409638 118409743 -2847787 - PB1D10 SINE Alu -5 112 3 4 1488 419 323 30 8 chr12 118409743 118409784 -2847746 - ID SINE ID -141 83 40 4 1488 1928 218 34 13 chr12 118409806 118410192 -2847338 - MTD LTR MaLR -16 403 10 4 1488 202 273 0 0 chr12 118411413 118411457 -2846073 + G-rich Low_complexity Low_complexity 5 48 0 4 1488 213 0 0 75 chr12 118412932 118412972 -2844558 + (CTG)n Simple_repeat Simple_repeat 1 37 0 4 1488 2460 112 93 41 chr12 118413137 118413556 -2843974 - BGLII_B LTR ERVK 0 441 1 4 1488 1137 202 5 14 chr12 118415986 118416197 -2841333 - B3 SINE B2 -7 209 1 4 1488 665 299 47 9 chr12 118416961 118417194 -2840336 - MIR SINE MIR -20 242 1 4 1488 635 285 54 38 chr12 118419029 118419215 -2838315 + B4A SINE B4 43 231 -61 4 1488 442 242 0 32 chr12 118419228 118419322 -2838208 + PB1D9 SINE Alu 24 114 -6 4 1488 285 219 164 0 chr12 118419298 118419371 -2838159 + B4A SINE B4 196 280 -12 4 1488 360 64 0 0 chr12 118419372 118419419 -2838111 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1488 438 286 112 36 chr12 118420410 118420453 -2837077 - MIR SINE MIR -19 243 198 4 1488 376 209 89 62 chr12 118420453 118420565 -2836965 - PB1D10 SINE Alu 0 117 3 4 1488 438 286 112 36 chr12 118420565 118420717 -2836813 - MIR SINE MIR -65 197 33 4 1488 593 261 7 7 chr12 118421129 118421268 -2836262 - ID_B1 SINE B4 -84 140 2 4 1488 284 356 112 6 chr12 118421332 118421510 -2836020 - MIRb SINE MIR -26 242 46 4 1488 213 39 0 0 chr12 118422288 118422314 -2835216 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1488 872 188 56 11 chr12 118425734 118425912 -2831618 + B3 SINE B2 20 205 -11 4 1488 358 170 43 43 chr12 118426487 118426579 -2830951 - L1MA5 LINE L1 0 6300 6209 4 1488 596 263 39 19 chr12 118426819 118426974 -2830556 + RSINE1 SINE B4 2 159 -6 4 1488 22 56 0 0 chr12 118426985 118427021 -2830509 + AT_rich Low_complexity Low_complexity 1 36 0 4 1488 608 214 92 0 chr12 118427025 118427156 -2830374 + B1_Mur2 SINE Alu 2 144 -5 4 1488 591 294 85 9 chr12 118427196 118427512 -2830018 + L1MA6 LINE L1 5599 5938 -362 4 1488 1055 66 7 0 chr12 118427626 118427762 -2829768 + B1_Mus2 SINE Alu 10 146 -1 4 1488 208 188 21 0 chr12 118427762 118427810 -2829720 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 4 1488 435 244 189 69 chr12 118427866 118428126 -2829404 + B4A SINE B4 2 292 0 4 1488 582 51 0 0 chr12 118428132 118428210 -2829320 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 1488 476 269 37 0 chr12 118428218 118428326 -2829204 + PB1D7 SINE Alu 9 120 0 4 1488 21 0 0 0 chr12 118431452 118431473 -2826057 + AT_rich Low_complexity Low_complexity 1 21 0 4 1488 22 35 0 0 chr12 118431775 118431804 -2825726 + AT_rich Low_complexity Low_complexity 1 29 0 4 1488 985 275 111 13 chr12 118432547 118432934 -2824596 - Lx8 LINE L1 -266 7207 6783 4 1488 293 286 70 13 chr12 118433158 118433314 -2824216 - L1MEd LINE L1 -5029 1090 926 4 1488 360 0 0 0 chr12 118433534 118433574 -2823956 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1488 198 118 0 0 chr12 118433874 118433908 -2823622 + (TGG)n Simple_repeat Simple_repeat 1 34 0 4 1488 661 236 14 7 chr12 118434258 118434403 -2823127 + B1_Mur1 SINE Alu 4 149 0 4 1488 606 96 19 9 chr12 118434405 118434510 -2823020 + (GGA)n Simple_repeat Simple_repeat 3 108 0 4 1488 234 0 0 0 chr12 118439697 118439723 -2817807 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 4 1488 250 338 0 0 chr12 118440020 118440088 -2817442 + ID4 SINE ID 7 74 -9 4 1488 22 56 0 0 chr12 118441861 118441897 -2815633 + AT_rich Low_complexity Low_complexity 1 36 0 4 1488 380 294 33 33 chr12 118443464 118443647 -2813883 + L1MA4A LINE L1 5802 5984 -316 4 1488 1686 143 29 4 chr12 118444317 118444591 -2812939 - MTC LTR MaLR 0 421 141 4 1488 1232 304 99 0 chr12 118444681 118445076 -2812454 + Tigger7 DNA MER2_type 30 463 -2028 4 1488 365 259 121 7 chr12 118445079 118445219 -2812311 + Tigger7 DNA MER2_type 2315 2470 -21 4 1488 553 298 131 15 chr12 118445696 118445955 -2811575 + B4 SINE B4 2 290 -2 4 1488 459 260 94 49 chr12 118446393 118446643 -2810887 - MTEa LTR MaLR -20 359 3 4 1488 612 256 44 25 chr12 118447292 118447452 -2810078 + RSINE1 SINE B4 3 165 0 4 1488 676 254 78 73 chr12 118447646 118447850 -2809680 - B4A SINE B4 -83 209 5 4 1488 1035 122 216 0 chr12 118447896 118448077 -2809453 - URR1A DNA MER1_type 0 226 7 4 1488 403 221 142 80 chr12 118448701 118448863 -2808667 + MT2B2 LTR ERVL 93 264 -320 4 1488 620 203 19 45 chr12 118448742 118448762 -2808768 + ID_B1 SINE B4 73 222 -1 4 1488 1054 52 15 0 chr12 118448762 118448896 -2808634 + B1_Mm SINE Alu 12 147 0 4 1488 270 211 2 0 chr12 118448934 118448983 -2808547 + ID2 SINE ID 2 51 -101 4 1488 192 275 123 12 chr12 118451759 118451840 -2805690 - MIRm SINE MIR -18 258 169 4 1488 525 167 0 0 chr12 118453178 118453280 -2804250 + GA-rich Low_complexity Low_complexity 1 102 0 4 1488 228 371 91 21 chr12 118454470 118454613 -2802917 - MLT1B LTR MaLR -2 388 236 4 1488 730 193 7 40 chr12 118456074 118456225 -2801305 - B1_Mur1 SINE Alu -2 147 2 4 1488 918 301 29 7 chr12 118456710 118456984 -2800546 - B4 SINE B4 -8 284 5 4 1488 1093 216 62 0 chr12 118457306 118457533 -2799997 + MTEa LTR MaLR 139 379 0 4 1488 2657 274 126 133 chr12 118457533 118459124 -2798406 + MTEa-int LTR MaLR 1 1580 0 4 1488 1396 151 14 0 chr12 118459147 118459359 -2798171 - B3 SINE B2 0 216 2 4 1488 418 235 50 20 chr12 118459368 118459456 -2798074 + MTEa LTR MaLR 9 99 -280 4 1488 728 247 62 0 chr12 118459456 118459602 -2797928 + B3 SINE B2 1 155 -61 4 1488 546 16 0 0 chr12 118459605 118459668 -2797862 + (GGGAGA)n Simple_repeat Simple_repeat 5 67 0 4 1488 4319 53 0 6 chr12 118459688 118460216 -2797314 + L1Md_F2 LINE L1 6051 6575 -7 4 1488 957 243 107 20 chr12 118460219 118460471 -2797059 + MTEa LTR MaLR 97 370 -9 4 1488 192 321 87 26 chr12 118461429 118461544 -2795986 - MIRb SINE MIR -74 194 73 4 1488 770 216 33 33 chr12 118463600 118463782 -2793748 - B3A SINE B2 -16 182 1 4 1488 1065 215 23 18 chr12 118463822 118464040 -2793490 + ID_B1 SINE B4 4 222 -2 4 1488 790 235 30 70 chr12 118464042 118464243 -2793287 + B3A SINE B2 5 197 -1 4 1488 456 324 14 41 chr12 118464249 118464394 -2793136 + RSINE1 SINE B4 12 152 -13 4 1488 414 69 0 0 chr12 118464396 118464454 -2793076 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1488 342 236 8 109 chr12 118464482 118464601 -2792929 + MT2B LTR ERVL 152 258 -343 4 1488 779 222 7 0 chr12 118464502 118464637 -2792893 + B1_Mur2 SINE Alu 6 141 -8 4 1488 190 187 82 118 chr12 118467447 118467532 -2789998 + L2 LINE L2 37 118 -3301 4 1488 740 197 0 26 chr12 118468349 118468500 -2789030 + B1_Mus1 SINE Alu 2 148 0 4 1488 759 93 0 0 chr12 118470636 118470754 -2786776 + (TC)n Simple_repeat Simple_repeat 2 119 0 4 1488 180 111 0 0 chr12 118471035 118471062 -2786468 + (CATATA)n Simple_repeat Simple_repeat 6 32 0 4 1488 341 316 6 6 chr12 118471066 118471225 -2786305 + (CA)n Simple_repeat Simple_repeat 1 159 0 4 1488 2138 166 56 76 chr12 118473373 118473857 -2783673 - RLTR11A2 LTR ERVK -43 484 11 4 1488 431 133 313 10 chr12 118473853 118473952 -2783578 - RLTR11B LTR ERVK -324 129 1 4 1488 408 40 0 0 chr12 118474342 118474392 -2783138 + (GGA)n Simple_repeat Simple_repeat 3 52 0 4 1488 291 54 0 0 chr12 118474904 118474941 -2782589 + (TCC)n Simple_repeat Simple_repeat 3 39 0 4 1488 408 261 76 0 chr12 118475427 118475519 -2782011 - ID_B1 SINE B4 -42 182 84 4 1488 438 308 83 6 chr12 118475659 118475816 -2781714 - MER2 DNA MER2_type -176 169 1 4 1488 218 231 0 55 chr12 118475962 118476017 -2781513 + B4A SINE B4 94 145 -147 4 1488 335 189 45 3 chr12 118475971 118476056 -2781474 + B1F SINE Alu 15 96 -51 4 1488 358 154 26 0 chr12 118476062 118476140 -2781390 + GA-rich Low_complexity Low_complexity 1 80 0 4 1488 450 296 95 0 chr12 118477008 118477177 -2780353 + L1MB3 LINE L1 5996 6180 -3 4 1488 592 280 135 113 chr12 118479119 118479490 -2778040 - MTE2b LTR MaLR 0 379 1 4 1488 385 210 58 53 chr12 118479529 118479700 -2777830 - Lx5 LINE L1 0 7050 6879 4 1488 353 158 0 26 chr12 118479742 118479820 -2777710 + CT-rich Low_complexity Low_complexity 3 78 0 5 1488 770 239 0 30 chr12 118480434 118480598 -2776932 + RSINE1 SINE B4 5 163 -2 5 1488 400 273 11 20 chr12 118480679 118480788 -2776742 + PB1D10 SINE Alu 5 113 -36 5 1488 267 0 125 0 chr12 118481093 118481141 -2776389 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1488 918 241 60 5 chr12 118481191 118481391 -2776139 - B3 SINE B2 -5 211 1 5 1488 386 121 15 0 chr12 118481659 118481725 -2775805 + (TTG)n Simple_repeat Simple_repeat 2 68 0 5 1488 254 232 208 0 chr12 118482121 118482246 -2775284 - L1M2 LINE L1 -564 5736 5586 5 1488 965 326 53 15 chr12 118482354 118482616 -2774914 - B4A SINE B4 0 292 21 5 1488 308 285 82 14 chr12 118482617 118482763 -2774767 - L1M2 LINE L1 -859 5441 5286 5 1488 326 371 59 59 chr12 118482906 118483309 -2774221 - MLT1C LTR MaLR 0 390 4 5 1488 365 0 0 22 chr12 118485402 118485448 -2772082 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1488 318 50 0 0 chr12 118485618 118485658 -2771872 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1488 725 204 76 0 chr12 118485773 118485905 -2771625 + B1_Mur1 SINE Alu 2 143 -6 5 1488 213 39 0 0 chr12 118487642 118487668 -2769862 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1488 545 136 0 22 chr12 118488148 118488238 -2769292 - PB1D9 SINE Alu -9 111 24 5 1489 216 97 0 0 chr12 118489160 118489191 -2768339 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 5 1489 418 79 13 13 chr12 118489583 118489660 -2767870 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 5 1489 222 118 0 0 chr12 118490955 118490989 -2766541 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1489 450 0 0 0 chr12 118492706 118492756 -2764774 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1489 414 0 0 0 chr12 118494482 118494528 -2763002 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1489 234 0 0 0 chr12 118495086 118495112 -2762418 + (C)n Simple_repeat Simple_repeat 1 26 0 5 1489 234 0 0 0 chr12 118496160 118496186 -2761344 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1489 315 211 42 0 chr12 118497340 118497411 -2760119 - L1M4 LINE L1 -488 5692 5619 5 1489 537 16 0 0 chr12 118497679 118497741 -2759789 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 5 1489 545 302 50 28 chr12 118497754 118498054 -2759476 - L1MA7 LINE L1 -388 5903 5589 5 1489 549 110 0 0 chr12 118498054 118498136 -2759394 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 5 1489 619 294 103 18 chr12 118498136 118498610 -2758920 - L1M4 LINE L1 -584 5596 5080 5 1489 404 195 122 0 chr12 118498922 118499004 -2758526 + RSINE1 SINE B4 4 95 -70 5 1489 962 217 91 5 chr12 118499233 118499432 -2758098 - B3 SINE B2 0 216 1 5 1489 2199 159 50 2 chr12 118499446 118499849 -2757681 - BGLII_Mus LTR ERVK 0 422 1 5 1489 234 0 0 0 chr12 118502656 118502682 -2754848 + (CATG)n Simple_repeat Simple_repeat 1 26 0 1 1489 531 223 40 0 chr12 118502797 118502945 -2754585 + Lx9 LINE L1 7486 7639 -5 2 1489 936 238 9 27 chr12 118503021 118503241 -2754289 - B3 SINE B2 0 216 1 3 1489 3353 228 40 11 chr12 118506234 118507100 -2750430 - RCHARR1 DNA MER1_type -5 969 3 4 1489 180 0 0 0 chr12 118507105 118507125 -2750405 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 5 1489 471 253 229 0 chr12 118507128 118507298 -2750232 + B3 SINE B2 3 211 -5 6 1489 222 91 0 0 chr12 118507647 118507680 -2749850 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1489 299 267 39 26 chr12 118508439 118508456 -2749074 - ID SINE ID -144 80 3 8 1489 311 224 17 33 chr12 118508456 118508516 -2749014 - ID4_ SINE ID -22 61 3 9 1489 899 166 183 52 chr12 118508983 118509174 -2748356 + B3 SINE B2 1 216 0 1 1489 23 33 0 0 chr12 118509742 118509772 -2747758 + AT_rich Low_complexity Low_complexity 1 30 0 1 1489 795 240 0 0 chr12 118509789 118509939 -2747591 + B3A SINE B2 2 151 -47 1 1489 301 299 25 17 chr12 118509993 118510112 -2747418 - L1MC4a LINE L1 -34 7848 7729 1 1489 218 191 99 42 chr12 118512033 118512047 -2745483 - ID_B1 SINE B4 -67 157 86 1 1489 261 98 74 56 chr12 118512047 118512101 -2745429 - B1F1 SINE Alu -90 59 5 1 1489 180 0 0 0 chr12 118512162 118512182 -2745348 + (CACG)n Simple_repeat Simple_repeat 2 21 0 1 1489 342 0 0 0 chr12 118512261 118512299 -2745231 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1489 290 331 6 11 chr12 118512331 118512508 -2745022 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1489 237 325 12 18 chr12 118512821 118512987 -2744543 + (TCTG)n Simple_repeat Simple_repeat 2 166 0 1 1489 284 299 0 25 chr12 118512824 118512944 -2744586 + CT-rich Low_complexity Low_complexity 1 117 0 1 1489 252 125 24 63 chr12 118513989 118514052 -2743478 + PB1 SINE Alu 67 125 -2 2 1489 338 0 24 0 chr12 118514827 118514869 -2742661 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1489 915 96 0 0 chr12 118515279 118515415 -2742115 + (GGAA)n Simple_repeat Simple_repeat 4 139 0 2 1489 423 0 0 0 chr12 118517122 118517169 -2740361 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1489 701 285 110 38 chr12 118517178 118517597 -2739933 - L1MA5 LINE L1 -368 5932 5484 2 1489 283 260 13 13 chr12 118517654 118517732 -2739798 - B3A SINE B2 -120 78 1 2 1489 1073 294 92 137 chr12 118517732 118518447 -2739083 - L1M2 LINE L1 -427 5453 4695 2 1489 489 47 0 0 chr12 118518447 118518511 -2739019 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 2 1489 201 39 0 0 chr12 118518514 118518540 -2738990 + (CTTG)n Simple_repeat Simple_repeat 3 28 0 2 1489 536 285 73 0 chr12 118518544 118518681 -2738849 - B3A SINE B2 -50 148 2 2 1489 1139 294 92 137 chr12 118518681 118519359 -2738171 - L1M2 LINE L1 -1413 4723 3984 2 1489 1198 292 50 31 chr12 118519360 118519717 -2737813 - MTE2a LTR MaLR -2 377 14 3 1489 673 43 85 12 chr12 118519731 118519895 -2737635 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 3 1489 1304 282 46 36 chr12 118519901 118520534 -2736996 - L1M2 LINE L1 -2167 3976 3338 2 1489 288 202 61 41 chr12 118520660 118520758 -2736772 - Lx9 LINE L1 0 7644 7545 3 1489 280 308 90 0 chr12 118521874 118521952 -2735578 + B1F SINE Alu 8 92 -57 3 1489 180 0 0 0 chr12 118521955 118521975 -2735555 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1489 512 321 107 0 chr12 118524893 118525024 -2732506 + RSINE1 SINE B4 17 161 -4 3 1489 189 107 0 0 chr12 118525028 118525056 -2732474 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1489 779 236 32 55 chr12 118525093 118525313 -2732217 + B3 SINE B2 2 216 0 3 1489 647 265 0 0 chr12 118525346 118525482 -2732048 + B1_Mur1 SINE Alu 10 145 -4 3 1489 1163 192 129 36 chr12 118525521 118525824 -2731706 - IAPEY3_LTR LTR ERVK 0 332 2 3 1489 928 120 19 0 chr12 118525824 118525982 -2731548 + (GGAA)n Simple_repeat Simple_repeat 3 163 0 4 1489 190 0 32 32 chr12 118528648 118528679 -2728851 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1489 895 50 160 0 chr12 118528679 118528798 -2728732 - B1_Mus1 SINE Alu -9 139 2 4 1489 456 259 37 9 chr12 118528974 118529083 -2728447 - B4A SINE B4 -180 112 1 4 1489 507 283 0 0 chr12 118529129 118529235 -2728295 - PB1D10 SINE Alu -8 109 4 4 1489 200 315 0 0 chr12 118529466 118529520 -2728010 + C-rich Low_complexity Low_complexity 5 58 0 4 1489 221 119 24 0 chr12 118529541 118529583 -2727947 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 4 1489 3110 79 10 2 chr12 118529678 118530082 -2727448 + MTB_Mm LTR MaLR 1 407 0 4 1489 222 301 0 0 chr12 118531515 118531598 -2725932 + (CCA)n Simple_repeat Simple_repeat 2 84 0 4 1489 1545 200 69 17 chr12 118531907 118532268 -2725262 - MTD LTR MaLR -39 380 1 4 1489 806 291 99 51 chr12 118532770 118533025 -2724505 - RMER5 LTR ERV1 -55 479 215 5 1489 1592 159 70 73 chr12 118533025 118533397 -2724133 - ORR1D1 LTR MaLR 0 374 4 5 1489 806 291 99 51 chr12 118533397 118533535 -2723995 - RMER5 LTR ERV1 -320 214 67 5 1489 429 20 0 0 chr12 118534230 118534280 -2723250 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1489 582 275 93 22 chr12 118535485 118535667 -2721863 + B3 SINE B2 2 196 -20 5 1489 1306 176 130 185 chr12 118535722 118536251 -2721279 + Lx7 LINE L1 6989 7488 -208 5 1489 318 301 13 82 chr12 118536258 118536293 -2721237 - L1MEe LINE L1 -4009 845 811 5 1489 365 129 0 0 chr12 118536293 118536355 -2721175 - Lx4A LINE L1 0 7058 6997 5 1489 318 301 13 82 chr12 118536355 118536478 -2721052 - L1MEe LINE L1 -4044 810 699 5 1489 1187 48 7 14 chr12 118536488 118536636 -2720894 - B1_Mm SINE Alu 0 147 1 5 1489 322 255 0 52 chr12 118537169 118537285 -2720245 + (CCTG)n Simple_repeat Simple_repeat 3 112 0 5 1489 1706 131 159 22 chr12 118537462 118537783 -2719747 - ORR1B2 LTR MaLR -2 365 1 5 1489 279 0 0 0 chr12 118537836 118537867 -2719663 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1489 264 192 19 0 chr12 118538859 118538911 -2718619 - L4 LINE RTE -5 2024 1972 6 1489 226 139 0 0 chr12 118539338 118539374 -2718156 + MIR SINE MIR 88 123 -85 6 1489 590 267 174 73 chr12 118539914 118540209 -2717321 + L1M4 LINE L1 3626 3957 -2189 6 1489 477 284 71 0 chr12 118540209 118540336 -2717194 + B1F SINE Alu 1 136 -13 6 1489 288 0 0 0 chr12 118540336 118540368 -2717162 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1489 590 272 182 69 chr12 118540368 118540761 -2716769 + L1M4 LINE L1 3951 4410 -1730 6 1489 2696 165 145 26 chr12 118540940 118541486 -2716044 + RMER19C LTR ERVK 1 611 0 6 1489 399 309 38 51 chr12 118541655 118541812 -2715718 - MLT1B LTR MaLR -190 200 46 6 1489 594 243 101 0 chr12 118541877 118542046 -2715484 + B3A SINE B2 2 187 -11 6 1489 207 0 0 0 chr12 118542054 118542077 -2715453 + (GA)n Simple_repeat Simple_repeat 1 23 0 6 1489 348 83 0 0 chr12 118542370 118542418 -2715112 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1489 392 223 18 18 chr12 118543931 118544213 -2713317 + (CA)n Simple_repeat Simple_repeat 1 282 0 7 1489 516 222 0 49 chr12 118544676 118544799 -2712731 + PB1D10 SINE Alu 1 117 0 7 1489 548 288 58 19 chr12 118544811 118544967 -2712563 + RSINE1 SINE B4 4 165 0 7 1489 375 78 0 0 chr12 118547187 118547238 -2710292 + (GGA)n Simple_repeat Simple_repeat 2 52 0 7 1489 272 326 7 14 chr12 118547266 118547339 -2710191 + polypurine Low_complexity Low_complexity 2 75 0 7 1489 288 0 0 0 chr12 118547339 118547371 -2710159 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1489 272 326 7 14 chr12 118547371 118547437 -2710093 + polypurine Low_complexity Low_complexity 76 140 0 7 1489 586 254 0 0 chr12 118547956 118548078 -2709452 + B1_Mur4 SINE Alu 11 132 -18 7 1489 2572 124 12 81 chr12 118548219 118548703 -2708827 + RLTR11B LTR ERVK 1 451 -2 7 1489 1308 160 35 65 chr12 118548731 118549057 -2708473 - RMER19B LTR ERVK 0 902 320 8 1489 429 326 100 63 chr12 118549253 118549561 -2707969 - RLTR16 LTR ERVK -60 468 32 8 1489 1280 212 3 151 chr12 118549582 118549960 -2707570 - RMER19C LTR ERVK -288 323 2 8 1489 228 111 0 0 chr12 118550098 118550134 -2707396 + (TATG)n Simple_repeat Simple_repeat 3 38 0 8 1489 1190 252 64 4 chr12 118551458 118551725 -2705805 + B4 SINE B4 10 292 0 8 1489 572 292 25 43 chr12 118552143 118552304 -2705226 + ORR1D2 LTR MaLR 94 251 -119 8 1489 290 272 12 12 chr12 118552283 118552365 -2705165 - ORR1D1 LTR MaLR -292 82 1 8 1489 1549 224 60 19 chr12 118552889 118553253 -2704277 + MTEa LTR MaLR 1 379 0 8 1489 757 134 8 8 chr12 118555081 118555201 -2702329 + B1_Mus2 SINE Alu 27 146 -1 8 1489 357 241 0 0 chr12 118555260 118555276 -2702254 + ID_B1 SINE B4 70 140 -79 8 1489 410 119 0 0 chr12 118555276 118555335 -2702195 + PB1D9 SINE Alu 1 59 -61 9 1489 447 306 46 43 chr12 118557736 118558054 -2699476 + RLTR6-int LTR ERV1 2895 3169 -4609 9 1489 414 39 0 0 chr12 118558083 118558135 -2699395 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1489 491 167 221 44 chr12 118558272 118558385 -2699145 + B1_Mur3 SINE Alu 9 141 -8 9 1489 221 0 0 33 chr12 118558386 118558416 -2699114 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 9 1489 253 221 43 29 chr12 118558446 118558516 -2699014 + RLTR14-int LTR ERV1 1913 1983 -3334 9 1489 291 291 57 91 chr12 118559768 118560033 -2697497 + RLTR14-int LTR ERV1 3397 3652 -1665 9 1489 186 289 151 35 chr12 118560378 118560464 -2697066 + MIRm SINE MIR 29 124 -152 9 1489 23 68 0 0 chr12 118560838 118560882 -2696648 + AT_rich Low_complexity Low_complexity 1 44 0 9 1489 704 199 228 0 chr12 118560924 118561095 -2696435 + B3 SINE B2 3 212 -4 9 1489 3887 183 96 41 chr12 118561389 118561777 -2695753 + RMER19B LTR ERVK 45 423 -479 9 1489 216 0 0 0 chr12 118561777 118561801 -2695729 + (GGGAGA)n Simple_repeat Simple_repeat 1 24 0 1 1489 3887 172 119 13 chr12 118561801 118562244 -2695286 + RMER19B LTR ERVK 424 902 0 9 1489 890 302 37 11 chr12 118562632 118563049 -2694481 + L1M3 LINE L1 3743 4147 -1700 1 1489 909 152 140 11 chr12 118563051 118563237 -2694293 + B3 SINE B2 1 210 -6 1 1489 413 247 114 61 chr12 118563313 118563469 -2694061 + L1M3 LINE L1 4158 4330 -1813 1 1489 3115 213 57 76 chr12 118563469 118564445 -2693085 + RMER17B LTR ERVK 1 958 0 1 1489 413 247 114 61 chr12 118564445 118564551 -2692979 + L1M3 LINE L1 4331 4434 -1709 1 1489 326 271 27 153 chr12 118564552 118564735 -2692795 + RMER15 LTR ERVL 1 160 -415 1 1489 236 306 78 50 chr12 118564729 118564870 -2692660 + RMER15 LTR ERVL 273 417 -158 1 1489 269 140 51 34 chr12 118565554 118565613 -2691917 + RLTR22_Mur LTR ERVK 1306 1365 -483 1 1489 287 273 11 43 chr12 118565929 118566021 -2691509 + B3A SINE B2 5 93 -105 1 1489 321 234 0 61 chr12 118566105 118566187 -2691343 + B4 SINE B4 2 78 -214 1 1489 210 245 19 0 chr12 118566200 118566253 -2691277 - PB1D10 SINE Alu -30 87 34 1 1489 369 273 72 50 chr12 118566313 118566325 -2691205 + ID_B1 SINE B4 82 219 -1 1 1489 500 219 106 32 chr12 118566325 118566448 -2691082 + B1_Mur1 SINE Alu 13 144 -5 1 1489 388 111 14 14 chr12 118566457 118566530 -2691000 + (GGA)n Simple_repeat Simple_repeat 3 75 0 1 1489 735 318 94 21 chr12 118566535 118566959 -2690571 - Zaphod2 DNA Tip100 -555 2969 2515 1 1489 880 265 20 72 chr12 118566964 118567269 -2690261 + B4A SINE B4 4 292 0 1 1489 210 406 0 0 chr12 118567278 118567401 -2690129 + (CA)n Simple_repeat Simple_repeat 2 124 0 1 1489 232 296 187 12 chr12 118567411 118567582 -2689948 - Zaphod2 DNA Tip100 -1016 2508 2308 1 1489 1706 281 73 22 chr12 118567773 118568351 -2689179 + RMER15-int LTR ERVL 690 1296 -3703 1 1489 643 267 33 27 chr12 118568364 118568514 -2689016 + B3A SINE B2 3 153 -45 1 1489 444 279 69 38 chr12 118568651 118568931 -2688599 + L1M3 LINE L1 5297 5594 -703 1 1489 414 0 0 0 chr12 118568931 118568977 -2688553 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1489 444 266 43 43 chr12 118568977 118568994 -2688536 + L1M3 LINE L1 5595 5609 -694 1 1489 755 251 25 0 chr12 118568997 118569160 -2688370 + B3 SINE B2 47 213 -3 1 1489 710 276 60 49 chr12 118569198 118569646 -2687884 + Lx7 LINE L1 5613 6054 -954 1 1489 1361 269 105 6 chr12 118570088 118570450 -2687080 - MTB_Mm LTR MaLR 0 407 10 1 1489 2082 166 19 14 chr12 118570650 118571011 -2686519 + ORR1B2 LTR MaLR 1 363 -4 1 1489 378 238 12 12 chr12 118571398 118571483 -2686047 - B3 SINE B2 0 216 132 1 1489 294 95 0 0 chr12 118571745 118571787 -2685743 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1489 213 314 158 14 chr12 118571803 118571826 -2685704 - B4A SINE B4 -132 160 2 1 1489 662 183 0 9 chr12 118571826 118571942 -2685588 - B3 SINE B2 -100 116 2 1 1489 261 109 0 0 chr12 118572075 118572121 -2685409 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 1489 1798 192 39 14 chr12 118572122 118572481 -2685049 - MTD LTR MaLR -30 389 22 1 1489 216 0 0 0 chr12 118572481 118572505 -2685025 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1489 643 279 22 31 chr12 118573019 118573222 -2684308 + B4A SINE B4 15 205 -87 1 1489 343 229 14 0 chr12 118573223 118573293 -2684237 + B4A SINE B4 156 226 -66 1 1489 406 206 119 18 chr12 118573347 118573456 -2684074 + B3 SINE B2 93 212 -4 1 1489 340 274 0 40 chr12 118573470 118573482 -2684048 + B4A SINE B4 216 225 -67 1 1489 228 67 0 0 chr12 118573482 118573512 -2684018 + (CATA)n Simple_repeat Simple_repeat 1 30 0 1 1489 340 274 0 40 chr12 118573512 118573575 -2683955 + B4A SINE B4 226 288 -4 1 1489 726 289 89 49 chr12 118573608 118573957 -2683573 + RMER13A LTR ERVK 30 392 -468 1 1489 213 351 0 0 chr12 118574364 118574384 -2683146 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1489 666 95 0 0 chr12 118574384 118574479 -2683051 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 1489 213 351 0 0 chr12 118574479 118574535 -2682995 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1489 834 239 59 43 chr12 118576909 118577080 -2680450 + B4A SINE B4 34 203 -89 1 1489 1756 191 61 39 chr12 118577080 118577488 -2680042 + MTC LTR MaLR 5 421 0 1 1489 834 239 59 43 chr12 118577488 118577522 -2680008 + B4A SINE B4 204 238 -54 1 1489 768 256 84 70 chr12 118577522 118577808 -2679722 + B4A SINE B4 1 290 -2 1 1489 834 239 59 43 chr12 118577808 118577855 -2679675 + B4A SINE B4 239 290 -2 1 1489 449 194 28 28 chr12 118577885 118578065 -2679465 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1489 363 160 38 51 chr12 118578065 118578144 -2679386 + HAL1-3A_ME LINE L1 1975 2052 -806 1 1489 1521 181 186 28 chr12 118578824 118579271 -2678259 + RMER4B LTR ERVK 17 456 -10 1 1489 355 181 217 0 chr12 118579305 118579388 -2678142 + PB1D10 SINE Alu 17 117 0 1 1489 290 91 18 0 chr12 118579391 118579446 -2678084 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 1 1489 306 73 0 0 chr12 118580533 118580574 -2676956 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1489 354 23 0 0 chr12 118581364 118581407 -2676123 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1489 420 307 89 86 chr12 118581418 118581576 -2675954 - Lx8 LINE L1 -1577 5896 5751 1 1489 1006 267 24 21 chr12 118581576 118581867 -2675663 - B4A SINE B4 0 292 1 1 1489 420 282 199 69 chr12 118581867 118582042 -2675488 - Lx8 LINE L1 -517 5783 5569 1 1489 1660 32 0 0 chr12 118582042 118582229 -2675301 - B2_Mm1t SINE B2 -5 188 2 1 1489 387 286 172 82 chr12 118582229 118582528 -2675002 - Lx8 LINE L1 -732 5568 5258 1 1489 990 144 110 16 chr12 118582598 118582789 -2674741 - B3 SINE B2 -6 210 2 1 1489 643 286 74 0 chr12 118582833 118583022 -2674508 - B4A SINE B4 -3 289 87 1 1489 393 22 0 0 chr12 118583455 118583501 -2674029 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1489 360 275 0 52 chr12 118584783 118584879 -2672651 - B3 SINE B2 -125 91 1 1 1489 408 246 24 63 chr12 118586299 118586425 -2671105 + RSINE1 SINE B4 3 123 -42 1 1489 204 175 0 0 chr12 118586665 118586728 -2670802 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1489 870 140 0 0 chr12 118586727 118586906 -2670624 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 1489 249 33 0 0 chr12 118587421 118587451 -2670079 + (TCC)n Simple_repeat Simple_repeat 2 31 0 1 1489 570 248 27 34 chr12 118587459 118587605 -2669925 - B1_Mur1 SINE Alu 0 149 5 1 1489 22 56 0 0 chr12 118588246 118588282 -2669248 + AT_rich Low_complexity Low_complexity 1 36 0 1 1489 776 221 29 0 chr12 118588303 118588443 -2669087 - RSINE1 SINE B4 -14 151 8 1 1489 305 154 19 0 chr12 118589336 118589388 -2668142 + B3 SINE B2 1 53 -163 1 1489 595 297 4 87 chr12 118589398 118589627 -2667903 - ID_B1 SINE B4 -13 211 2 1 1489 202 274 0 19 chr12 118590264 118590316 -2667214 + CT-rich Low_complexity Low_complexity 1 51 0 1 1489 607 184 139 26 chr12 118591571 118591722 -2665808 + B2_Mm2 SINE B2 9 176 -19 1 1489 779 177 6 0 chr12 118591724 118591888 -2665642 + GA-rich Low_complexity Low_complexity 3 167 0 1 1489 450 0 0 0 chr12 118593269 118593319 -2664211 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1489 375 212 116 12 chr12 118593341 118593427 -2664103 - ID_B1 SINE B4 0 224 130 1 1489 235 291 151 28 chr12 118593427 118593446 -2664084 - B1F SINE Alu -1 147 30 1 1489 625 242 16 24 chr12 118593455 118593582 -2663948 + ID_B1 SINE B4 93 218 -6 1 1489 312 247 48 107 chr12 118593464 118593591 -2663939 - YREP_Mm Unknown Unknown -1516 296 171 1 1489 872 165 0 28 chr12 118593591 118593734 -2663796 + B1_Mur2 SINE Alu 1 139 -10 1 1489 297 0 0 0 chr12 118593734 118593767 -2663763 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1489 312 247 48 107 chr12 118593767 118593806 -2663724 - YREP_Mm Unknown Unknown -1642 170 140 1 1489 342 223 76 38 chr12 118593875 118593985 -2663545 + PB1D7 SINE Alu 7 120 0 1 1489 389 220 43 11 chr12 118594201 118594293 -2663237 + RSINE1 SINE B4 15 109 -56 1 1489 343 274 48 0 chr12 118594290 118594374 -2663156 + RSINE1 SINE B4 63 150 -15 1 1489 210 37 0 0 chr12 118594389 118594416 -2663114 + (CAT)n Simple_repeat Simple_repeat 2 28 0 1 1489 933 223 9 41 chr12 118594456 118594676 -2662854 + B3 SINE B2 1 213 -3 1 1489 306 0 0 0 chr12 118594681 118594715 -2662815 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1489 968 184 62 16 chr12 118594848 118594930 -2662600 + ID_B1 SINE B4 19 211 -13 1 1489 265 269 143 39 chr12 118594930 118595029 -2662501 - YREP_Mm Unknown Unknown -1518 294 190 1 1489 201 39 0 0 chr12 118595029 118595055 -2662475 + (CAA)n Simple_repeat Simple_repeat 1 26 0 1 1489 968 184 62 16 chr12 118595055 118595066 -2662464 + ID_B1 SINE B4 212 220 -4 1 1489 265 269 143 39 chr12 118595066 118595137 -2662393 - YREP_Mm Unknown Unknown -1623 189 94 1 1489 217 221 35 11 chr12 118596585 118596672 -2660858 + CT-rich Low_complexity Low_complexity 4 92 0 1 1489 644 255 136 15 chr12 118596955 118597154 -2660376 - ID_B1 SINE B4 0 224 2 1 1489 235 319 41 14 chr12 118597372 118597445 -2660085 + PB1D10 SINE Alu 1 75 -42 1 1489 747 184 0 0 chr12 118597526 118597662 -2659868 + B1_Mur2 SINE Alu 1 136 -13 1 1489 585 266 45 7 chr12 118599975 118600130 -2657400 + RSINE1 SINE B4 3 163 -2 1 1489 202 206 0 0 chr12 118600134 118600168 -2657362 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1489 644 254 13 27 chr12 118600205 118600355 -2657175 + B1_Mur2 SINE Alu 2 149 0 1 1489 21 0 0 0 chr12 118600363 118600384 -2657146 + AT_rich Low_complexity Low_complexity 1 21 0 1 1489 429 30 45 0 chr12 118600562 118600629 -2656901 + (CTG)n Simple_repeat Simple_repeat 1 70 0 1 1489 3712 56 2 15 chr12 118601090 118601559 -2655971 + L1_Mus1 LINE L1 6105 6567 0 1 1489 295 373 0 21 chr12 118601925 118602070 -2655460 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1489 493 255 33 40 chr12 118602313 118602464 -2655066 + B3A SINE B2 5 154 -44 1 1489 474 18 0 0 chr12 118602464 118602519 -2655011 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1489 302 259 0 58 chr12 118602606 118602692 -2654838 + RSINE1 SINE B4 2 82 -83 1 1489 214 191 21 0 chr12 118602702 118602749 -2654781 - PB1D10 SINE Alu -30 87 40 1 1489 520 244 96 30 chr12 118602815 118602950 -2654580 + B1_Mur1 SINE Alu 1 144 -5 1 1489 614 97 17 17 chr12 118602959 118603074 -2654456 + (GGA)n Simple_repeat Simple_repeat 3 117 0 1 1489 641 310 145 8 chr12 118603079 118603479 -2654051 - Zaphod2 DNA Tip100 -555 2969 2515 1 1489 1015 265 24 61 chr12 118603485 118603782 -2653748 + B4A SINE B4 5 290 -2 1 1489 355 374 0 16 chr12 118603787 118603969 -2653561 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1489 1000 220 10 5 chr12 118604353 118604554 -2652976 - B3 SINE B2 -12 204 3 2 1489 273 273 139 51 chr12 118604602 118604760 -2652770 + Tigger7 DNA MER2_type 2312 2483 -8 2 1489 487 327 93 37 chr12 118604794 118605064 -2652466 - Zaphod2 DNA Tip100 -1792 1732 1448 1 1489 402 57 0 0 chr12 118605081 118605134 -2652396 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1489 1057 182 70 0 chr12 118605532 118605719 -2651811 + MTC LTR MaLR 9 208 -213 2 1489 789 188 0 0 chr12 118605722 118605850 -2651680 + B1_Mus1 SINE Alu 3 130 -18 2 1489 554 209 0 8 chr12 118605864 118605994 -2651536 + GA-rich Low_complexity Low_complexity 2 130 0 2 1489 1195 174 36 14 chr12 118605994 118606215 -2651315 + MTC LTR MaLR 196 421 0 2 1489 3013 167 69 32 chr12 118606214 118606985 -2650545 + MTC-int LTR MaLR 1 785 -313 2 1489 5948 29 1 0 chr12 118606985 118607666 -2649864 - L1Md_F3 LINE L1 -44 6540 5859 2 1489 704 194 68 26 chr12 118607676 118607867 -2649663 + MTC-int LTR MaLR 1060 1258 0 2 1489 438 242 0 0 chr12 118607867 118607958 -2649572 + MTC LTR MaLR 1 91 -330 2 1489 333 279 93 29 chr12 118608294 118608434 -2649096 - Zaphod2 DNA Tip100 -2625 899 751 1 1489 505 274 0 0 chr12 118608424 118608526 -2649004 + B1_Mur2 SINE Alu 36 137 -12 2 1489 198 0 0 0 chr12 118608526 118608548 -2648982 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 1489 437 296 82 48 chr12 118608676 118609022 -2648508 + MTEa LTR MaLR 6 379 0 2 1489 271 286 59 12 chr12 118609026 118609111 -2648419 + MLT2B3 LTR ERVL 64 152 -402 2 1489 267 314 84 98 chr12 118609234 118609541 -2647989 + MLT2B3 LTR ERVL 160 483 -37 2 1489 359 266 126 6 chr12 118609581 118609755 -2647775 - Zaphod2 DNA Tip100 -2831 693 499 1 1489 781 184 13 39 chr12 118609933 118610086 -2647444 + B1_Mur3 SINE Alu 1 149 0 2 1489 893 217 134 8 chr12 118610668 118610914 -2646616 + B4A SINE B4 4 280 -12 2 1489 327 25 0 0 chr12 118610920 118610960 -2646570 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1489 2691 244 144 5 chr12 118611562 118612382 -2645148 + RCHARR1 DNA MER1_type 5 938 -36 2 1489 390 327 83 68 chr12 118612402 118612668 -2644862 + Lx8 LINE L1 6022 6291 -1182 2 1489 2695 133 40 36 chr12 118612668 118613247 -2644283 - RLTR21 LTR ERVK 0 1572 1064 2 1489 7073 109 43 10 chr12 118613249 118614424 -2643106 - RLTR21 LTR ERVK -358 1214 1 2 1489 1451 291 34 15 chr12 118614425 118614837 -2642693 + Lx8 LINE L1 6287 6706 -767 2 1489 1887 254 34 26 chr12 118614891 118615392 -2642138 + Lx8 LINE L1 6806 7310 -163 2 1489 480 86 0 0 chr12 118615408 118615478 -2642052 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1489 1386 173 148 39 chr12 118615731 118616068 -2641462 - ORR1D1 LTR MaLR 0 374 1 2 1489 395 223 205 36 chr12 118616387 118616582 -2640948 + MLT1C LTR MaLR 3 230 -237 2 1489 205 179 0 0 chr12 118616949 118616988 -2640542 + G-rich Low_complexity Low_complexity 6 44 0 2 1489 210 71 0 0 chr12 118617024 118617052 -2640478 + (TCCG)n Simple_repeat Simple_repeat 2 29 0 2 1489 297 0 0 0 chr12 118618270 118618303 -2639227 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2 1489 926 119 0 0 chr12 118618778 118618912 -2638618 + B1_Mur4 SINE Alu 6 139 -11 2 1489 180 0 0 0 chr12 118618912 118618932 -2638598 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1489 785 251 23 0 chr12 118619884 118620059 -2637471 - B3A SINE B2 -18 180 2 2 186 1769 150 117 53 chr12 118620144 118620538 -2636992 + MTC LTR MaLR 1 419 -2 2 1490 972 24 0 0 chr12 118620974 118621097 -2636433 + B1_Mm SINE Alu 2 124 -23 2 1490 286 28 0 0 chr12 118621145 118621181 -2636349 - RLTRETN_Mm LTR ERVK 0 322 287 2 1490 11490 52 35 23 chr12 118621779 118623286 -2634244 + MMETn-int LTR ERVK 3321 4844 0 2 1490 2870 9 3 0 chr12 118623286 118623607 -2633923 + RLTRETN_Mm LTR ERVK 1 322 0 2 1490 643 230 22 22 chr12 118624487 118624625 -2632905 - B3A SINE B2 -54 144 7 2 1490 207 0 0 0 chr12 118624631 118624654 -2632876 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 2 1490 378 331 63 16 chr12 118624654 118624780 -2632750 - ID_B1 SINE B4 -9 215 84 2 1490 21 0 0 0 chr12 118624793 118624814 -2632716 + AT_rich Low_complexity Low_complexity 1 21 0 2 1490 798 190 0 0 chr12 118624827 118624964 -2632566 + B1_Mur2 SINE Alu 7 143 -6 2 1490 465 269 100 0 chr12 118624996 118625126 -2632404 - ID_B1 SINE B4 -15 209 67 2 1490 235 318 62 38 chr12 118625245 118625405 -2632125 - LTR41B LTR ERVL -591 167 4 2 1490 286 147 64 11 chr12 118628651 118628722 -2628808 + MLT1E2 LTR MaLR 121 189 -316 2 1490 3814 96 7 85 chr12 118628722 118629337 -2628193 + RMER2 LTR ERV1 1 567 0 2 1490 255 175 67 101 chr12 118629337 118629354 -2628176 + MLT1E2 LTR MaLR 190 208 -297 2 1490 29 0 0 0 chr12 118629561 118629590 -2627940 + AT_rich Low_complexity Low_complexity 1 29 0 2 1490 653 121 34 8 chr12 118629656 118629773 -2627757 + RMER5 LTR ERV1 415 534 0 2 1490 326 23 23 0 chr12 118630035 118630078 -2627452 + (GTTTG)n Simple_repeat Simple_repeat 5 48 0 2 1490 1916 155 6 20 chr12 118630754 118631109 -2626421 - RLTR15 LTR ERVK 0 359 10 2 1490 273 136 15 29 chr12 118631289 118631357 -2626173 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1490 348 164 0 0 chr12 118631700 118631767 -2625763 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1490 288 0 0 0 chr12 118632007 118632039 -2625491 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2 1490 40 59 0 0 chr12 118632216 118632284 -2625246 + AT_rich Low_complexity Low_complexity 1 68 0 2 1490 192 40 0 0 chr12 118632441 118632466 -2625064 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 2 1490 1022 139 0 0 chr12 118634405 118634549 -2622981 + B1_Mur2 SINE Alu 5 148 -1 2 1490 26 30 0 0 chr12 118634966 118634999 -2622531 + AT_rich Low_complexity Low_complexity 1 33 0 2 1490 662 193 38 57 chr12 118635496 118635655 -2621875 + RMER5 LTR ERV1 1 156 -378 2 1490 501 266 52 28 chr12 118635683 118635896 -2621634 - RLTR12B LTR ERVK -43 485 268 2 1490 1163 62 7 0 chr12 118635918 118636062 -2621468 + B1_Mus1 SINE Alu 4 148 0 2 1490 180 0 0 0 chr12 118636062 118636082 -2621448 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1490 298 238 225 23 chr12 118636108 118636271 -2621259 - RLTR12B LTR ERVK -308 220 11 2 1490 1861 154 14 11 chr12 118636280 118636641 -2620889 + RMER5 LTR ERV1 151 512 -22 2 1490 250 283 126 37 chr12 118636655 118636717 -2620813 - MER63D DNA AcHobo -761 300 244 2 1490 2870 16 0 0 chr12 118636717 118637039 -2620491 - RLTRETN_Mm LTR ERVK 0 322 1 2 1490 250 283 126 37 chr12 118637039 118637167 -2620363 - MER63D DNA AcHobo -818 243 93 2 1490 213 39 0 0 chr12 118637282 118637308 -2620222 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1490 315 0 0 0 chr12 118637308 118637342 -2620188 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1490 597 52 0 0 chr12 118637906 118637983 -2619547 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 1490 289 263 20 31 chr12 118638224 118638322 -2619208 + MIRb SINE MIR 85 181 -87 2 1490 198 0 0 0 chr12 118638414 118638436 -2619094 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1490 365 185 37 30 chr12 118638442 118638576 -2618954 + (TCTCTG)n Simple_repeat Simple_repeat 4 138 0 2 1490 557 64 13 0 chr12 118638594 118638672 -2618858 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1490 928 108 0 0 chr12 118638689 118638828 -2618702 - B2_Mm2 SINE B2 -56 139 1 2 1490 555 198 39 31 chr12 118638831 118638961 -2618569 - B2_Mm2 SINE B2 -15 180 50 2 1490 735 199 106 0 chr12 118639947 118640088 -2617442 - B3 SINE B2 -60 156 1 2 1490 4164 4 0 0 chr12 118640939 118641392 -2616138 + L1Md_A LINE L1 6130 6582 0 2 1490 819 31 0 0 chr12 118641488 118641586 -2615944 + (CTTTG)n Simple_repeat Simple_repeat 2 99 0 2 1490 1086 45 7 22 chr12 118641588 118641725 -2615805 - B1_Mm SINE Alu -12 135 1 2 1490 1355 121 86 16 chr12 118644390 118644633 -2612897 - MTC LTR MaLR 0 421 162 2 1490 246 248 19 199 chr12 118644633 118644940 -2612590 + RMER17C LTR ERVK 1 252 -158 2 1490 725 121 0 8 chr12 118645052 118645169 -2612361 + URR1B DNA MER1_type 94 209 -16 2 1490 276 250 0 0 chr12 118645183 118645247 -2612283 - MTC LTR MaLR -308 113 50 2 1490 237 261 152 9 chr12 118645434 118645546 -2611984 + MER5A DNA MER1_type 18 145 -44 2 1490 1540 202 108 0 chr12 118645984 118646326 -2611204 + RLTR30 LTR ERV1 1 379 0 2 1490 819 80 0 0 chr12 118646473 118646585 -2610945 + (TTC)n Simple_repeat Simple_repeat 3 114 0 2 1490 228 371 12 76 chr12 118647233 118647484 -2610046 + ORR1E LTR MaLR 115 349 -10 2 1490 233 191 56 56 chr12 118647561 118647633 -2609897 + RMER2 LTR ERV1 466 537 -30 2 1490 470 197 70 35 chr12 118648651 118648793 -2608737 - B1F2 SINE Alu -1 148 2 2 1490 481 291 114 85 chr12 118652680 118653275 -2604255 + MLT1E1A LTR MaLR 1 680 0 2 1490 234 277 112 35 chr12 118654033 118654149 -2603381 + MER5B DNA MER1_type 54 178 0 2 1490 213 132 0 0 chr12 118654313 118654351 -2603179 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 2 1490 940 203 85 98 chr12 118655101 118655511 -2602019 - RMER16 LTR ERVK 0 533 1 2 1490 226 24 0 89 chr12 118655596 118655641 -2601889 + (CAGAGA)n Simple_repeat Simple_repeat 3 43 0 2 1490 362 143 13 0 chr12 118655662 118655739 -2601791 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1490 2331 181 17 15 chr12 118655806 118656287 -2601243 - RLTR16 LTR ERVK -12 493 12 2 1490 777 100 0 0 chr12 118656287 118656417 -2601113 + (TC)n Simple_repeat Simple_repeat 2 131 0 2 1490 180 0 0 0 chr12 118656417 118656436 -2601094 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1490 763 191 22 0 chr12 118656900 118657036 -2600494 + B3A SINE B2 4 142 -56 2 1490 324 0 0 0 chr12 118657041 118657077 -2600453 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1490 677 307 75 0 chr12 118657251 118657479 -2600051 - B4A SINE B4 -43 249 5 2 1490 180 0 0 0 chr12 118657699 118657719 -2599811 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1490 442 241 61 18 chr12 118657812 118657926 -2599604 + B1F SINE Alu 29 147 -2 2 1490 360 370 29 82 chr12 118658033 118658204 -2599326 + B4A SINE B4 13 174 -118 2 1490 226 337 11 0 chr12 118658273 118658362 -2599168 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 1490 852 209 11 0 chr12 118658393 118658570 -2598960 - B3 SINE B2 -6 210 32 2 1490 332 260 40 8 chr12 118659238 118659358 -2598172 - L1MC4a LINE L1 -42 7840 7746 2 1490 1055 231 141 0 chr12 118659359 118659614 -2597916 + B4A SINE B4 2 292 0 2 1490 626 229 3 0 chr12 118659620 118659934 -2597596 + (CA)n Simple_repeat Simple_repeat 1 315 0 3 1490 466 218 131 11 chr12 118660013 118660189 -2597341 - L1MC4a LINE L1 -239 7643 7447 2 1490 238 255 182 9 chr12 118660309 118660477 -2597053 - L1MC4a LINE L1 -815 7180 6990 2 1490 595 36 12 12 chr12 118660706 118660789 -2596741 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1490 378 269 9 0 chr12 118660793 118660901 -2596629 - L1MC4a LINE L1 -1269 6613 6505 2 1490 236 299 0 0 chr12 118661086 118661153 -2596377 - L1MC4a LINE L1 -540 5624 5558 2 1490 526 231 107 20 chr12 118661346 118661439 -2596091 - RLTR20A1 LTR ERVK 0 551 461 3 1490 315 0 0 0 chr12 118661439 118661474 -2596056 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1490 526 249 717 52 chr12 118661474 118661569 -2595961 - RLTR20A1 LTR ERVK -91 460 290 3 1490 1610 42 0 10 chr12 118661569 118661761 -2595769 - B2_Mm1a SINE B2 0 193 4 3 1490 1041 159 67 93 chr12 118661761 118662049 -2595481 - RLTR20A1 LTR ERVK -271 289 1 3 1490 434 18 18 0 chr12 118662275 118662330 -2595200 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1490 1146 59 0 0 chr12 118662330 118662482 -2595048 - B2_Mm2 SINE B2 -42 153 2 3 1490 1637 32 21 0 chr12 118662671 118662860 -2594670 - B2_Mm1a SINE B2 0 193 1 3 1490 775 280 68 94 chr12 118663595 118663989 -2593541 - MLT1B LTR MaLR -1 389 6 3 1490 27 0 0 0 chr12 118664283 118664310 -2593220 + AT_rich Low_complexity Low_complexity 1 27 0 3 1490 1075 58 66 0 chr12 118664840 118664977 -2592553 + B1_Mus2 SINE Alu 2 147 0 3 1490 246 143 0 0 chr12 118664977 118665026 -2592504 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1490 204 111 0 0 chr12 118665278 118665314 -2592216 + (AGGGGG)n Simple_repeat Simple_repeat 2 37 0 3 1490 298 315 9 9 chr12 118665626 118665735 -2591795 + LTR41B LTR ERVL 1 109 -649 3 1490 429 272 0 81 chr12 118665745 118665881 -2591649 + B1F2 SINE Alu 2 126 -23 3 1490 540 0 0 0 chr12 118665881 118665941 -2591589 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1490 242 213 25 62 chr12 118665998 118666078 -2591452 + LTR41B LTR ERVL 99 175 -583 3 1490 1116 207 198 3 chr12 118666726 118667060 -2590470 - MTC LTR MaLR -2 419 21 3 1490 239 323 30 40 chr12 118667097 118667197 -2590333 + PB1D9 SINE Alu 20 118 -2 3 1490 860 180 30 71 chr12 118668397 118668594 -2588936 - B3A SINE B2 -5 193 5 3 1490 426 280 8 8 chr12 118668598 118668717 -2588813 - B4 SINE B4 -64 228 110 3 1490 781 204 0 0 chr12 118668762 118668899 -2588631 + B1_Mur4 SINE Alu 1 137 -13 3 1490 224 59 29 0 chr12 118668916 118668950 -2588580 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1490 232 292 42 42 chr12 118669414 118669532 -2587998 + MIRm SINE MIR 157 274 -2 3 1490 301 261 78 102 chr12 118670128 118670256 -2587274 + RSINE1 SINE B4 41 165 0 3 1490 198 0 0 0 chr12 118670290 118670312 -2587218 + (TA)n Simple_repeat Simple_repeat 1 22 0 3 1490 1931 177 33 31 chr12 118671595 118671985 -2585545 + MTC LTR MaLR 2 392 -29 3 1490 3387 262 95 22 chr12 118672226 118673306 -2584224 + RMER1C Other Other 180 1338 -4 3 1490 3626 51 58 0 chr12 118673339 118673788 -2583742 + MT2C_Mm LTR ERVL 1 475 0 3 1490 1248 77 0 0 chr12 118673940 118674109 -2583421 + (GAA)n Simple_repeat Simple_repeat 2 170 0 3 1490 584 283 52 22 chr12 118674494 118674765 -2582765 + L1M5 LINE L1 5298 5576 -586 3 1490 855 304 134 50 chr12 118674810 118675453 -2582077 + LTR41 LTR ERVL 21 717 -51 3 1490 347 259 122 7 chr12 118675594 118675742 -2581788 - MTE2b LTR MaLR 0 379 215 3 1490 317 143 29 73 chr12 118675744 118675812 -2581718 + MTC LTR MaLR 2 66 -355 3 1490 1317 115 7 116 chr12 118675882 118675912 -2581618 + RLTR11B LTR ERVK 206 231 -222 3 1490 477 0 0 0 chr12 118675912 118675965 -2581565 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1490 1317 115 7 116 chr12 118675965 118676210 -2581320 + RLTR11B LTR ERVK 232 451 -2 3 1490 1966 129 60 3 chr12 118676212 118676547 -2580983 + MTC LTR MaLR 67 420 -1 3 1490 761 280 33 9 chr12 118676549 118676762 -2580768 - MTE2b LTR MaLR -161 218 1 3 1490 560 235 151 39 chr12 118676791 118677076 -2580454 + L1ME3 LINE L1 5792 6095 -67 3 1490 609 273 38 72 chr12 118677097 118677334 -2580196 + B4A SINE B4 63 291 -1 3 1490 1203 64 0 0 chr12 118679022 118679179 -2578351 + (TG)n Simple_repeat Simple_repeat 2 158 0 3 1490 22 35 0 0 chr12 118679302 118679331 -2578199 + AT_rich Low_complexity Low_complexity 1 29 0 3 1490 611 280 115 23 chr12 118679353 118679613 -2577917 + B4A SINE B4 1 284 -8 3 1490 389 160 0 36 chr12 118679633 118679743 -2577787 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 1490 288 143 0 0 chr12 118680122 118680178 -2577352 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 3 1490 4455 132 70 61 chr12 118680203 118681073 -2576457 + RMER19B LTR ERVK 1 878 -24 3 1490 1365 116 0 0 chr12 118681079 118681268 -2576262 + B2_Mm2 SINE B2 1 189 -6 3 1490 342 0 0 0 chr12 118681462 118681500 -2576030 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1490 1497 28 0 0 chr12 118681500 118681678 -2575852 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 3 1490 2077 171 48 43 chr12 118682842 118683234 -2574296 + ORR1B1 LTR MaLR 1 394 0 3 1490 1332 99 16 0 chr12 118683840 118684031 -2573499 + B2_Mm2 SINE B2 1 194 -1 3 1490 405 0 0 0 chr12 118684092 118684137 -2573393 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 3 1490 823 144 3 10 chr12 118684140 118684429 -2573101 + (CATA)n Simple_repeat Simple_repeat 1 287 0 3 1490 187 342 97 0 chr12 118684474 118684588 -2572942 - MIRb SINE MIR -19 249 125 3 1490 462 262 41 34 chr12 118685201 118685347 -2572183 - B1F SINE Alu -1 148 2 3 1490 498 265 114 37 chr12 118687090 118687388 -2570142 - RMER10A LTR ERVL 0 442 122 3 1490 975 207 12 54 chr12 118687442 118687682 -2569848 - RLTR12A LTR ERVK -4 564 335 3 1490 1120 162 20 10 chr12 118687802 118688002 -2569528 - RLTR12A LTR ERVK -250 318 117 3 1490 1768 97 131 24 chr12 118688018 118688315 -2569215 - Lx LINE L1 -1 6653 6325 3 1490 738 103 17 0 chr12 118688317 118688433 -2569097 - RLTR12A LTR ERVK -436 132 15 3 1490 297 211 129 32 chr12 118688531 118688624 -2568906 - RMER10A LTR ERVL -340 102 1 3 1490 214 119 84 56 chr12 118689385 118689456 -2568074 + (GGCTG)n Simple_repeat Simple_repeat 5 77 0 3 1490 334 250 19 39 chr12 118689487 118689591 -2567939 - RLTR14 LTR ERV1 0 382 281 3 1490 353 286 140 53 chr12 118689879 118690086 -2567444 - BLACKJACK DNA AcHobo -394 2550 2326 3 1490 424 297 81 37 chr12 118690057 118690218 -2567312 - B3 SINE B2 -34 182 15 3 1490 1113 305 141 21 chr12 118690219 118691250 -2566280 - BLACKJACK DNA AcHobo -565 2379 1226 3 1490 656 308 55 122 chr12 118691254 118691446 -2566084 + MTD LTR MaLR 3 209 -210 3 1490 1081 83 14 0 chr12 118691446 118691591 -2565939 + B1_Mus1 SINE Alu 2 148 0 3 1490 656 308 55 122 chr12 118691591 118691709 -2565821 + MTD LTR MaLR 210 292 -127 3 1490 991 316 171 35 chr12 118691830 118692244 -2565286 - BLACKJACK DNA AcHobo -1717 1227 795 3 1490 917 248 9 23 chr12 118692244 118692463 -2565067 - B3 SINE B2 0 216 1 3 1490 991 316 171 35 chr12 118692463 118693047 -2564483 - BLACKJACK DNA AcHobo -2150 794 93 3 1490 806 266 33 37 chr12 118693213 118693428 -2564102 + B4A SINE B4 8 221 -71 3 1490 284 280 0 13 chr12 118693459 118693535 -2563995 + B4A SINE B4 216 290 -2 3 1490 1986 296 73 31 chr12 118693577 118694742 -2562788 + L1MA10 LINE L1 5102 6334 0 3 1490 2118 82 171 29 chr12 118694756 118695106 -2562424 + Lx2 LINE L1 6598 6997 0 3 1490 1067 149 160 0 chr12 118695472 118695666 -2561864 - URR1B DNA MER1_type 0 225 1 3 1490 703 311 24 63 chr12 118698260 118698593 -2558937 - MLT1A0 LTR MaLR -3 362 43 3 1490 266 277 69 10 chr12 118698793 118698895 -2558635 - LTR33 LTR ERVL -359 156 49 3 1490 749 187 67 0 chr12 118699207 118699341 -2558189 + B1_Mur2 SINE Alu 1 143 -6 3 1490 1068 129 0 0 chr12 118699346 118699516 -2558014 + (GA)n Simple_repeat Simple_repeat 1 170 0 3 1490 366 231 0 0 chr12 118699523 118699614 -2557916 + GA-rich Low_complexity Low_complexity 31 121 0 3 1490 210 211 0 0 chr12 118699635 118699673 -2557857 + ID4_ SINE ID 12 49 -34 3 1490 213 302 0 0 chr12 118699695 118699748 -2557782 + GA-rich Low_complexity Low_complexity 3 55 0 3 1490 225 0 0 0 chr12 118699798 118699823 -2557707 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 3 1490 1826 81 117 98 chr12 118699844 118699891 -2557639 - ORR1A2 LTR MaLR -4 323 285 3 1490 1244 157 5 0 chr12 118699891 118700082 -2557448 - B2_Mm1t SINE B2 0 193 2 3 1490 1826 81 117 98 chr12 118700082 118700351 -2557179 - ORR1A2 LTR MaLR -43 284 1 3 1490 1700 206 37 24 chr12 118700563 118700945 -2556585 + MTD LTR MaLR 1 387 -32 3 1490 245 276 0 0 chr12 118701631 118701689 -2555841 + ID_B1 SINE B4 98 155 -69 3 1490 966 63 0 0 chr12 118701749 118701875 -2555655 + (GGA)n Simple_repeat Simple_repeat 1 126 0 3 1490 500 191 215 42 chr12 118702095 118702286 -2555244 + MTD LTR MaLR 194 417 -2 3 1490 935 187 0 47 chr12 118702384 118702575 -2554955 + ORR1D1 LTR MaLR 1 182 -192 3 1490 496 75 21 21 chr12 118702576 118702671 -2554859 + (TCTCTG)n Simple_repeat Simple_repeat 4 98 0 3 1490 372 71 18 0 chr12 118702681 118702737 -2554793 - HAL1-3A_ME LINE L1 -824 2034 1978 3 1490 640 181 195 18 chr12 118702737 118702906 -2554624 + ORR1D1 LTR MaLR 186 384 0 3 1490 186 43 0 0 chr12 118703385 118703408 -2554122 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1490 1156 75 0 0 chr12 118703408 118703554 -2553976 - B1_Mus2 SINE Alu 0 147 2 3 1490 759 264 11 32 chr12 118703829 118704017 -2553513 - B3 SINE B2 -28 188 5 3 1490 446 284 0 17 chr12 118704293 118704411 -2553119 + PB1D10 SINE Alu 1 116 -1 3 1490 239 261 0 55 chr12 118705078 118705151 -2552379 - B3 SINE B2 -3 213 145 3 1490 305 172 0 0 chr12 118705172 118705230 -2552300 - B3 SINE B2 -158 58 1 3 1490 468 0 0 0 chr12 118705251 118705303 -2552227 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1490 358 271 0 45 chr12 118705319 118705431 -2552099 - RSINE1 SINE B4 -33 132 26 3 1490 323 44 22 0 chr12 118705461 118705506 -2552024 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 1490 393 348 92 27 chr12 118706013 118706341 -2551189 + L2a LINE L2 3078 3426 0 3 1490 965 198 88 146 chr12 118707952 118708040 -2549490 + MTD LTR MaLR 1 82 -337 3 1490 6285 80 22 2 chr12 118708040 118708898 -2548632 + Lx2 LINE L1 6123 6997 0 3 1490 965 198 88 146 chr12 118708898 118708924 -2548606 + MTD LTR MaLR 83 83 -336 3 1490 1137 116 0 0 chr12 118708924 118709097 -2548433 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 3 1490 965 198 88 146 chr12 118709097 118709289 -2548241 + MTD LTR MaLR 83 290 -129 3 1490 466 216 189 0 chr12 118709529 118709677 -2547853 - MTEb LTR MaLR -1 378 203 3 1490 4449 49 4 2 chr12 118709684 118710219 -2547311 - L1_Mus1 LINE L1 0 6567 6032 3 1490 3328 97 0 27 chr12 118710221 118710700 -2546830 + L1_Mm LINE L1 4685 5150 -733 3 1490 2767 56 18 0 chr12 118710961 118711301 -2546229 - ORR1A0 LTR MaLR 0 346 1 3 1490 498 356 53 0 chr12 118711435 118711682 -2545848 + MER2 DNA MER2_type 86 345 0 3 1490 459 52 0 0 chr12 118711841 118711899 -2545631 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 4 1490 7852 149 42 14 chr12 118711899 118713815 -2543715 - Lx5 LINE L1 -19 7031 5047 4 1490 580 174 9 0 chr12 118713835 118713944 -2543586 - B1_Mur3 SINE Alu 0 149 40 4 1490 27 0 0 0 chr12 118713944 118713971 -2543559 + AT_rich Low_complexity Low_complexity 1 27 0 4 1490 209 200 0 0 chr12 118714474 118714509 -2543021 + (TATG)n Simple_repeat Simple_repeat 1 35 0 4 1490 416 316 52 21 chr12 118714650 118714844 -2542686 - L1M4 LINE L1 -443 5735 5536 4 1490 292 335 47 12 chr12 118715205 118715377 -2542153 - MARNA DNA Mariner -144 442 265 4 1490 278 258 0 0 chr12 118715499 118715561 -2541969 - ID SINE ID -141 83 22 4 1490 34 65 0 0 chr12 118715571 118715633 -2541897 + AT_rich Low_complexity Low_complexity 1 62 0 4 1490 231 211 35 0 chr12 118715637 118715694 -2541836 + B3 SINE B2 155 213 -3 4 1490 199 360 79 8 chr12 118716188 118716314 -2541216 + L3b LINE CR1 292 426 -56 4 1490 338 333 53 16 chr12 118716751 118716940 -2540590 - L1M5 LINE L1 -425 5699 5504 4 1490 316 40 40 0 chr12 118717084 118717134 -2540396 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1490 306 133 61 17 chr12 118717463 118717578 -2539952 + GA-rich Low_complexity Low_complexity 4 123 0 4 1490 232 231 109 17 chr12 118718187 118718306 -2539224 + L2a LINE L2 3020 3149 -277 4 1490 468 91 0 0 chr12 118719893 118719959 -2537571 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1490 390 245 65 83 chr12 118720497 118720666 -2536864 + MER5B DNA MER1_type 6 171 -7 4 1490 789 40 0 0 chr12 118721151 118721252 -2536278 + (GA)n Simple_repeat Simple_repeat 1 101 0 4 1490 234 360 71 66 chr12 118722086 118722297 -2535233 - B4 SINE B4 0 292 81 4 1490 4459 197 62 23 chr12 118722302 118723260 -2534270 - Lx5 LINE L1 -11 7039 6045 4 1490 1063 269 65 17 chr12 118723437 118723793 -2533737 - MLT1B LTR MaLR 0 390 18 4 1490 243 329 14 0 chr12 118723842 118723912 -2533618 + ID4 SINE ID 2 72 -11 4 1490 465 19 0 0 chr12 118723913 118723967 -2533563 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1490 243 54 54 0 chr12 118724256 118724293 -2533237 - MLT1H LTR MaLR -133 311 273 4 1490 2125 119 21 18 chr12 118724293 118724619 -2532911 + ORR1A2 LTR MaLR 1 327 0 4 1490 228 276 26 0 chr12 118725604 118725673 -2531857 + MLT1A0 LTR MaLR 3 73 -292 4 1490 326 235 142 38 chr12 118725673 118725779 -2531751 + RSINE1 SINE B4 3 119 -46 4 1490 498 263 140 13 chr12 118725841 118726076 -2531454 + MLT1A0 LTR MaLR 101 365 0 4 1490 349 290 75 16 chr12 118726416 118726602 -2530928 - MIR SINE MIR 0 262 66 4 1490 375 23 0 0 chr12 118726670 118726714 -2530816 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1490 1509 41 25 5 chr12 118727186 118727384 -2530146 + L1Md_F3 LINE L1 6381 6582 -2 4 1490 374 262 46 9 chr12 118727423 118727531 -2529999 - MER58B DNA MER1_type -13 328 217 4 1490 203 196 20 0 chr12 118727613 118727664 -2529866 + A-rich Low_complexity Low_complexity 2 53 0 4 1490 1031 186 53 24 chr12 118727669 118727878 -2529652 + B3 SINE B2 2 216 0 4 1490 25 65 0 0 chr12 118727878 118727924 -2529606 + AT_rich Low_complexity Low_complexity 1 46 0 4 1490 826 271 90 4 chr12 118727939 118728195 -2529335 + B4A SINE B4 7 284 -8 4 1490 391 344 8 0 chr12 118728521 118728646 -2528884 - MLT1H LTR MaLR -352 197 72 4 1490 1315 216 89 18 chr12 118731285 118731676 -2525854 + MTC LTR MaLR 3 421 0 4 1490 210 71 0 0 chr12 118732295 118732323 -2525207 + (TTCTG)n Simple_repeat Simple_repeat 4 31 0 4 1490 225 0 0 0 chr12 118732338 118732363 -2525167 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1490 429 54 0 0 chr12 118732499 118732555 -2524975 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 4 1490 250 288 92 39 chr12 118733208 118733338 -2524192 + MLT1A1 LTR MaLR 1 137 -271 4 1490 1089 115 53 27 chr12 118733728 118733771 -2523759 - B2_Mm2 SINE B2 -1 194 154 4 1490 321 26 0 0 chr12 118733771 118733809 -2523721 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1490 1089 115 53 27 chr12 118733809 118733953 -2523577 - B2_Mm2 SINE B2 -42 153 4 4 1490 459 337 71 32 chr12 118735678 118736018 -2521512 + ORR1E LTR MaLR 7 359 0 4 1490 1171 246 92 62 chr12 118738658 118739026 -2518504 + MTE2b LTR MaLR 1 379 0 4 1490 288 111 0 0 chr12 118740243 118740297 -2517233 + (A)n Simple_repeat Simple_repeat 1 54 0 4 1490 276 253 25 12 chr12 118740418 118740498 -2517032 + ID4_ SINE ID 2 82 -1 4 1490 707 268 28 19 chr12 118740771 118740984 -2516546 - ID_B1 SINE B4 0 224 10 4 1490 1220 274 86 13 chr12 118741009 118741461 -2516069 + L1MB3 LINE L1 5689 6173 -10 4 1490 1707 186 71 25 chr12 118741855 118742219 -2515311 - ORR1C2 LTR MaLR -2 382 2 4 1490 206 62 0 30 chr12 118742798 118742831 -2514699 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 4 1490 1673 194 21 185 chr12 118742863 118743561 -2513969 + RLTR18 LTR ERVK 4 511 -1 4 1490 293 222 16 0 chr12 118743845 118743908 -2513622 + B3 SINE B2 67 130 -86 4 1490 238 289 85 34 chr12 118744301 118744419 -2513111 - L2a LINE L2 0 3426 3303 4 1490 321 236 72 9 chr12 118744629 118744740 -2512790 - L1MA6 LINE L1 -373 5930 5813 4 1490 252 232 42 28 chr12 118744741 118744812 -2512718 - ID_B1 SINE B4 -2 222 151 4 1490 906 270 79 74 chr12 118744830 118744868 -2512662 - L1MA6 LINE L1 -468 5832 5793 4 1490 369 0 0 0 chr12 118744868 118744909 -2512621 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1490 906 270 79 74 chr12 118744909 118745314 -2512216 - L1MA6 LINE L1 -508 5792 5387 4 1490 1096 189 174 43 chr12 118745549 118745876 -2511654 + ORR1D1 LTR MaLR 1 370 -4 4 1490 740 265 57 32 chr12 118746157 118746445 -2511085 - ORR1E LTR MaLR -10 364 63 4 1490 463 167 13 0 chr12 118746431 118746509 -2511021 - B3 SINE B2 -63 153 75 4 1490 473 221 53 9 chr12 118746511 118746625 -2510905 + PB1D7 SINE Alu 2 120 0 4 1490 1063 275 92 11 chr12 118747694 118748051 -2509479 - MTD LTR MaLR -14 405 20 4 1490 180 0 0 0 chr12 118749146 118749166 -2508364 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1490 536 254 0 0 chr12 118749189 118749303 -2508227 - PB1D9 SINE Alu -3 117 4 4 1490 411 306 0 0 chr12 118749312 118749410 -2508120 - B1F SINE Alu -51 98 1 4 1490 2745 148 15 23 chr12 118749924 118750394 -2507136 + RMER4A LTR ERVK 1 466 0 4 1490 327 183 0 0 chr12 118750817 118750877 -2506653 + ORR1C1 LTR MaLR 310 369 -9 4 186 568 236 59 123 chr12 118751043 118751246 -2506284 - Lx8 LINE L1 -866 6607 6418 4 1491 430 215 65 0 chr12 118753005 118753098 -2504432 - ID_B1 SINE B4 -1 223 125 4 1491 283 219 0 14 chr12 118753115 118753189 -2504341 - ID2 SINE ID -10 73 1 4 1491 1247 229 21 14 chr12 118753992 118754280 -2503250 + B4A SINE B4 3 292 0 4 1491 311 0 26 0 chr12 118754310 118754349 -2503181 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1491 1247 172 47 0 chr12 118754416 118754631 -2502899 - URR1B DNA MER1_type 0 225 1 4 1491 273 184 49 0 chr12 118755381 118755451 -2502079 + MIRb SINE MIR 95 170 -92 4 1491 557 282 92 25 chr12 118755789 118756126 -2501404 + MLT1B LTR MaLR 5 382 -8 4 1491 883 300 22 0 chr12 118756182 118756459 -2501071 - MER34 LTR ERV1 -65 477 195 4 1491 825 38 0 0 chr12 118756685 118756790 -2500740 + (TTC)n Simple_repeat Simple_repeat 2 106 0 4 1491 1188 62 7 0 chr12 118756801 118756947 -2500583 - B1_Mus2 SINE Alu 0 147 1 4 1491 258 211 83 14 chr12 118757494 118757566 -2499964 + ID4 SINE ID 3 79 -4 4 1491 1240 115 42 33 chr12 118757897 118758112 -2499418 + URR1A DNA MER1_type 1 217 -9 4 1491 685 242 98 60 chr12 118758867 118758897 -2498633 - RMER17C LTR ERVK -49 361 332 4 1491 243 0 0 0 chr12 118758897 118758924 -2498606 + (TGG)n Simple_repeat Simple_repeat 1 27 0 4 1491 685 242 98 60 chr12 118758924 118759156 -2498374 - RMER17C LTR ERVK -79 331 85 4 1491 426 20 0 0 chr12 118759156 118759207 -2498323 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1491 685 242 98 60 chr12 118759207 118759291 -2498239 - RMER17C LTR ERVK -326 84 3 4 1491 347 330 44 88 chr12 118759589 118759815 -2497715 - B4A SINE B4 -9 283 68 4 1491 609 302 44 16 chr12 118759889 118760071 -2497459 - ID_B1 SINE B4 -10 214 28 4 1491 690 90 37 7 chr12 118761204 118761339 -2496191 + (TA)n Simple_repeat Simple_repeat 2 140 0 4 1491 1568 62 0 0 chr12 118761799 118761991 -2495539 + B2_Mm1a SINE B2 2 193 0 4 1491 257 318 37 0 chr12 118762870 118762977 -2494553 - MIRb SINE MIR -76 192 82 4 1491 949 260 72 35 chr12 118763636 118764039 -2493491 - Charlie1b DNA MER1_type -16 507 90 4 1491 238 299 12 38 chr12 118764056 118764136 -2493394 + ID4 SINE ID 2 79 -4 4 1491 400 157 34 0 chr12 118764175 118764264 -2493266 + CT-rich Low_complexity Low_complexity 3 94 0 4 1491 249 33 0 0 chr12 118764267 118764297 -2493233 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 4 1491 571 299 28 0 chr12 118764307 118764451 -2493079 - RSINE1 SINE B4 -14 151 4 4 1491 346 264 161 21 chr12 118764830 118764973 -2492557 + Tigger7 DNA MER2_type 2329 2491 0 4 1491 442 319 88 1 chr12 118765699 118765921 -2491609 - Tigger7 DNA MER2_type -2239 252 1 4 1491 291 314 0 11 chr12 118765937 118766024 -2491506 - BC1_Mm scRNA scRNA -65 87 2 4 1491 471 261 9 9 chr12 118766025 118766137 -2491393 - PB1D10 SINE Alu -3 114 3 4 1491 302 181 55 14 chr12 118766172 118766245 -2491285 + B1F SINE Alu 40 115 -34 4 1491 360 0 0 0 chr12 118766245 118766285 -2491245 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1491 307 321 75 0 chr12 118768334 118768440 -2489090 - PB1D10 SINE Alu -1 116 3 4 1491 199 340 142 5 chr12 118769499 118769703 -2487827 - L2a LINE L2 -68 3358 3127 4 1491 588 183 9 0 chr12 118769757 118769872 -2487658 - MER3 DNA MER1_type -16 193 78 5 1491 207 0 0 0 chr12 118770052 118770075 -2487455 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1491 505 257 38 140 chr12 118770103 118770338 -2487192 - B4 SINE B4 -2 290 80 5 1491 238 349 0 44 chr12 118770365 118770455 -2487075 - B4 SINE B4 -206 86 1 5 1491 524 198 66 0 chr12 118770657 118770778 -2486752 + ID_B1 SINE B4 96 224 0 5 1491 297 0 0 0 chr12 118770778 118770811 -2486719 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1491 224 149 0 21 chr12 118772284 118772332 -2485198 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 5 1491 23 33 0 0 chr12 118773440 118773470 -2484060 + AT_rich Low_complexity Low_complexity 1 30 0 5 1491 2775 132 39 11 chr12 118773824 118774285 -2483245 - Lx4A LINE L1 -1 7057 6584 5 1491 1510 198 111 13 chr12 118774802 118775180 -2482350 - MTD LTR MaLR 0 419 5 5 1491 508 311 36 112 chr12 118775281 118775639 -2481891 - MLT1A LTR MaLR -11 363 33 5 1491 442 274 10 0 chr12 118778335 118778437 -2479093 - B1F SINE Alu -36 113 11 5 1491 324 318 64 32 chr12 118778691 118778847 -2478683 - MIR SINE MIR -71 191 31 5 1491 679 263 84 13 chr12 118779407 118779634 -2477896 - MER2 DNA MER2_type -2 343 101 5 1491 444 267 103 7 chr12 118779734 118779870 -2477660 + B1F SINE Alu 1 149 0 5 1491 1207 199 128 18 chr12 118780093 118780430 -2477100 + ORR1D1 LTR MaLR 1 374 0 5 1491 220 294 8 121 chr12 118781640 118781764 -2475766 + PB1 SINE Alu 15 124 -3 5 1491 339 193 125 0 chr12 118782004 118782092 -2475438 + ID_B1 SINE B4 126 224 0 5 1491 206 253 74 25 chr12 118782492 118782573 -2474957 - MIR SINE MIR -144 118 34 5 1491 831 182 204 0 chr12 118782936 118783112 -2474418 - B3 SINE B2 -4 212 1 5 1491 826 109 21 21 chr12 118783283 118783424 -2474106 + B1_Mur4 SINE Alu 10 150 0 5 1491 1756 207 46 53 chr12 118784575 118784989 -2472541 - MTD LTR MaLR -8 411 1 5 1491 1871 251 49 57 chr12 118784993 118785622 -2471908 - MTD-int LTR MaLR -4 1254 631 5 1491 1854 191 94 11 chr12 118785623 118786004 -2471526 - MTD LTR MaLR -4 415 3 5 1491 565 231 158 50 chr12 118786152 118786412 -2471118 - B4A SINE B4 0 292 5 5 1491 237 273 15 0 chr12 118786596 118786662 -2470868 - ID_B1 SINE B4 -69 155 89 5 1491 235 202 93 23 chr12 118787058 118787144 -2470386 - MER5A DNA MER1_type -84 105 14 5 1491 233 299 39 13 chr12 118787221 118787299 -2470231 + MTEb LTR MaLR 75 154 -225 5 1491 343 268 103 57 chr12 118787370 118787564 -2469966 + MTEb LTR MaLR 159 361 -18 5 1491 405 245 18 70 chr12 118788729 118788843 -2468687 - PB1D10 SINE Alu -9 108 1 5 1491 557 287 7 0 chr12 118788867 118789010 -2468520 - ID_B1 SINE B4 0 224 81 5 1491 3333 107 137 13 chr12 118789477 118790010 -2467520 - MT2B LTR ERVL 0 601 3 5 1491 1400 46 17 0 chr12 118790500 118790673 -2466857 + B2_Mm2 SINE B2 1 176 -19 5 1491 188 232 16 82 chr12 118792288 118792349 -2465181 + L2a LINE L2 2989 3045 -381 5 1491 495 323 47 25 chr12 118793295 118793530 -2464000 + Tigger5 DNA MER2_type 1 240 -2166 5 1491 287 203 0 0 chr12 118793527 118793591 -2463939 + Tigger5 DNA MER2_type 2290 2353 -53 5 1491 1574 223 72 0 chr12 118793798 118794175 -2463355 - MTD LTR MaLR -6 413 10 5 1491 262 235 0 81 chr12 118794354 118794399 -2463131 - ID4 SINE ID -3 80 41 5 1491 3005 81 5 2 chr12 118794399 118794794 -2462736 + MTA_Mm LTR MaLR 1 396 0 5 1491 262 235 0 81 chr12 118794794 118794822 -2462708 - ID4 SINE ID -43 40 13 5 1491 326 308 0 0 chr12 118795017 118795095 -2462435 + polypyrimidine Low_complexity Low_complexity 4 81 0 5 1491 668 285 102 0 chr12 118796814 118797000 -2460530 + B3 SINE B2 1 205 -11 5 1491 285 29 0 0 chr12 118797003 118797037 -2460493 + (CATA)n Simple_repeat Simple_repeat 2 35 0 5 1491 445 236 404 33 chr12 118797241 118797518 -2460012 + L1_Mur3 LINE L1 1886 2265 -3615 5 1491 1416 279 71 5 chr12 118797517 118797913 -2459617 + Lx7 LINE L1 6804 7225 -471 5 1491 360 111 0 0 chr12 118797924 118797978 -2459552 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 5 1491 1025 52 0 0 chr12 118797978 118798113 -2459417 - B1_Mus2 SINE Alu -6 141 7 5 1491 438 221 14 112 chr12 118798007 118798150 -2459380 - MT2B LTR ERVL -337 264 136 5 1491 850 220 80 0 chr12 118798440 118798640 -2458890 + B3 SINE B2 1 216 0 5 1491 24 53 0 0 chr12 118799468 118799506 -2458024 + AT_rich Low_complexity Low_complexity 1 38 0 5 1491 710 274 16 16 chr12 118799510 118799692 -2457838 - B3A SINE B2 -16 182 1 5 1491 267 253 117 32 chr12 118799827 118799921 -2457609 - PB1 SINE Alu -2 125 24 5 1491 315 266 0 0 chr12 118800447 118800560 -2456970 + (TG)n Simple_repeat Simple_repeat 1 113 0 5 1491 432 391 0 6 chr12 118800625 118800805 -2456725 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1491 207 272 0 0 chr12 118800864 118800945 -2456585 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1491 390 284 0 0 chr12 118800959 118801135 -2456395 + (TG)n Simple_repeat Simple_repeat 2 177 0 5 1491 421 240 154 8 chr12 118802174 118802304 -2455226 + B1F SINE Alu 1 149 0 5 1491 456 19 0 0 chr12 118802880 118802933 -2454597 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1491 380 244 12 10 chr12 118803293 118803389 -2454141 - PB1D10 SINE Alu -17 103 1 5 1491 369 289 117 29 chr12 118804009 118804180 -2453350 + MER5A DNA MER1_type 3 188 -1 5 1491 300 125 414 0 chr12 118804195 118804299 -2453231 - B2_Mm2 SINE B2 -2 193 47 5 1491 1120 118 53 0 chr12 118804365 118804534 -2452996 - B2_Mm1t SINE B2 -14 179 2 5 1491 409 260 0 28 chr12 118805139 118805246 -2452284 - ID_B1 SINE B4 0 224 121 5 1491 280 328 7 56 chr12 118805265 118805405 -2452125 + RCHARR1 DNA MER1_type 5 137 -837 5 1491 703 308 64 12 chr12 118805405 118805655 -2451875 + B4 SINE B4 1 263 -29 5 1491 217 295 0 0 chr12 118805687 118805748 -2451782 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1491 1951 228 86 6 chr12 118805789 118806310 -2451220 + RCHARR1 DNA MER1_type 192 754 -220 5 1491 429 20 0 0 chr12 118806311 118806361 -2451169 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1491 826 215 12 12 chr12 118806361 118806526 -2451004 - B3A SINE B2 -33 165 1 5 1491 518 187 65 24 chr12 118806526 118806696 -2450834 + RCHARR1 DNA MER1_type 733 909 -65 5 1491 226 194 32 0 chr12 118806696 118806758 -2450772 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1491 373 222 25 0 chr12 118807163 118807244 -2450286 + PB1D10 SINE Alu 2 84 -33 5 1491 506 267 143 33 chr12 118807244 118807785 -2449745 - L1MC4 LINE L1 -279 7603 7010 5 1491 553 274 110 39 chr12 118808481 118808663 -2448867 - B3A SINE B2 0 198 4 5 1491 236 318 138 26 chr12 118808692 118808844 -2448686 - MER5B DNA MER1_type -9 169 1 5 1491 968 139 6 0 chr12 118809199 118809371 -2448159 + (TA)n Simple_repeat Simple_repeat 2 174 0 5 1491 392 292 10 0 chr12 118810585 118810681 -2446849 + PB1D10 SINE Alu 11 107 -10 5 1491 213 65 0 0 chr12 118811842 118811873 -2445657 + (TTG)n Simple_repeat Simple_repeat 2 32 0 5 1491 401 270 0 0 chr12 118812814 118812903 -2444627 + 5S rRNA rRNA 1 89 -32 5 1491 909 279 53 42 chr12 118813043 118813327 -2444203 - B4 SINE B4 -2 290 4 5 1491 268 127 36 0 chr12 118813913 118813968 -2443562 + (TTA)n Simple_repeat Simple_repeat 1 57 0 5 1491 288 296 12 0 chr12 118814928 118815009 -2442521 + ID4_ SINE ID 2 83 0 5 1491 984 222 18 41 chr12 118815040 118815261 -2442269 + B3 SINE B2 1 216 0 5 1491 288 331 25 63 chr12 118817106 118817264 -2440266 - L1ME3 LINE L1 -9 6153 6002 5 1491 278 336 28 18 chr12 118817588 118817697 -2439833 - Lx8 LINE L1 -284 7189 7080 5 1491 690 243 29 47 chr12 118817702 118817916 -2439614 - ORR1D2 LTR MaLR -41 338 85 5 1491 859 122 13 13 chr12 118817923 118818072 -2439458 + URR1A DNA MER1_type 78 226 0 5 1491 398 256 33 0 chr12 118818074 118818164 -2439366 - ORR1D2 LTR MaLR -260 99 7 5 1491 219 36 0 0 chr12 118818168 118818196 -2439334 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1491 243 61 0 0 chr12 118818206 118818239 -2439291 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1491 258 202 119 69 chr12 118820877 118820978 -2436552 + RLTR20D LTR ERVK 58 163 -405 5 1491 249 242 117 66 chr12 118821584 118821616 -2435914 - RLTR20D LTR ERVK -266 262 235 5 1491 248 0 0 30 chr12 118821616 118821649 -2435881 + (CCCCCA)n Simple_repeat Simple_repeat 1 32 0 5 1491 266 242 117 65 chr12 118821649 118821755 -2435775 - RLTR20D LTR ERVK -294 234 60 5 1491 757 252 23 32 chr12 118821959 118822180 -2435350 - MER20 DNA MER1_type 0 219 1 5 1491 261 57 0 0 chr12 118822473 118822508 -2435022 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1491 349 285 161 26 chr12 118823501 118823656 -2433874 - MIR SINE MIR -16 246 71 5 1491 189 0 0 0 chr12 118825483 118825504 -2432026 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1491 387 0 0 0 chr12 118825834 118825877 -2431653 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1491 189 300 56 0 chr12 118826132 118826222 -2431308 + L2 LINE L2 2012 2106 -1313 5 1491 559 321 68 39 chr12 118826267 118826546 -2430984 + MER74A LTR ERVL 24 310 -248 5 1491 1154 56 7 0 chr12 118826581 118826723 -2430807 - B1_Mus1 SINE Alu -1 147 5 5 1491 236 275 26 44 chr12 118826724 118826838 -2430692 + MER74A LTR ERVL 352 463 -159 5 1491 387 264 0 0 chr12 118826845 118827318 -2430212 + (CCCTA)n Simple_repeat Simple_repeat 1 473 0 5 1491 252 275 0 0 chr12 118827347 118827518 -2430012 + (CCCTA)n Simple_repeat Simple_repeat 3 173 0 5 1491 431 320 0 0 chr12 118827527 118827677 -2429853 + (CCCTG)n Simple_repeat Simple_repeat 4 153 0 5 1491 1714 20 0 19 chr12 118828035 118828243 -2429287 - L1Md_F3 LINE L1 -20 6564 6361 5 1491 497 15 15 0 chr12 118828243 118828308 -2429222 - RLTR10E LTR ERVK -245 66 1 5 1491 579 219 11 6 chr12 118828883 118829062 -2428468 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1491 1063 242 161 0 chr12 118829229 118829559 -2427971 - MTD LTR MaLR -2 417 35 5 1491 218 283 0 0 chr12 118829765 118829818 -2427712 - L2 LINE L2 -879 2540 2488 5 1491 194 220 0 17 chr12 118829827 118829887 -2427643 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1491 707 204 4 4 chr12 118829960 118830233 -2427297 + (TG)n Simple_repeat Simple_repeat 1 273 0 5 1491 336 48 0 0 chr12 118831751 118831793 -2425737 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 6 1491 331 78 31 0 chr12 118831794 118831858 -2425672 + (CAAAAA)n Simple_repeat Simple_repeat 2 67 0 6 1491 688 220 97 97 chr12 118831993 118832230 -2425300 - RLTR42 LTR ERVK 0 239 3 6 1491 582 238 103 0 chr12 118834239 118834365 -2423165 - B1_Mur1 SINE Alu -9 140 2 6 1491 1489 201 100 41 chr12 118834493 118834882 -2422648 - MTD LTR MaLR -1 418 7 6 1491 2546 111 60 0 chr12 118835467 118835820 -2421710 + ORR1C1 LTR MaLR 5 378 0 6 1491 453 145 0 0 chr12 118836256 118836332 -2421198 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1491 1061 210 40 0 chr12 118837558 118837758 -2419772 + B3 SINE B2 1 208 -8 6 1491 230 270 143 0 chr12 118837952 118838015 -2419515 + ID4_ SINE ID 3 74 -9 6 1491 245 282 8 134 chr12 118838029 118838156 -2419374 + MT2B LTR ERVL 155 265 -336 6 1491 614 276 22 0 chr12 118838043 118838177 -2419353 + ID_B1 SINE B4 81 217 -7 6 1491 350 214 11 0 chr12 118838205 118838294 -2419236 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 1491 198 0 0 0 chr12 118838403 118838425 -2419105 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1491 22 56 0 0 chr12 118839033 118839069 -2418461 + AT_rich Low_complexity Low_complexity 1 36 0 6 1491 221 143 58 58 chr12 118839214 118839266 -2418264 - PB1D10 SINE Alu 0 117 66 6 1491 684 252 0 7 chr12 118839225 118839361 -2418169 - ID_B1 SINE B4 -8 216 82 6 1491 304 312 52 0 chr12 118839861 118839957 -2417573 + B1F1 SINE Alu 1 101 -48 6 1491 2080 148 109 18 chr12 118840785 118841171 -2416359 + MTC LTR MaLR 1 421 0 6 1491 848 255 75 0 chr12 118842371 118842559 -2414971 + B3 SINE B2 15 216 0 6 1491 307 311 0 13 chr12 118842591 118842666 -2414864 + tRNA-Ala-GCA tRNA tRNA 1 74 -1 6 1491 1047 115 0 0 chr12 118843508 118843656 -2413874 - B2_Mm2 SINE B2 -47 148 1 6 1491 4005 163 69 142 chr12 118843739 118844792 -2412738 - RMER1A Other Other 0 1030 55 6 1491 304 381 54 42 chr12 118845068 118845298 -2412232 + MLT1E1A LTR MaLR 303 601 -79 6 1491 195 42 0 0 chr12 118845605 118845629 -2411901 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1491 203 204 130 0 chr12 118845818 118845872 -2411658 - MIRc SINE MIR -50 218 158 6 1491 2117 150 101 39 chr12 118846471 118846886 -2410644 - RMER10A LTR ERVL -1 441 1 6 1491 194 344 0 0 chr12 118847589 118847650 -2409880 - L3 LINE CR1 -625 3864 3804 6 1491 280 181 118 4 chr12 118847660 118847734 -2409796 - B3 SINE B2 -103 95 13 6 1491 1387 103 22 0 chr12 118847885 118848069 -2409461 - B2_Mm2 SINE B2 -7 188 1 6 1491 312 148 6 0 chr12 118849308 118849373 -2408157 + B1_Mus2 SINE Alu 52 145 -2 6 1491 31 44 0 0 chr12 118852108 118852153 -2405377 + AT_rich Low_complexity Low_complexity 1 45 0 6 1491 519 196 0 0 chr12 118852263 118852355 -2405175 - B1_Mur2 SINE Alu -9 140 49 6 1491 249 296 18 44 chr12 118853425 118853538 -2403992 - L2a LINE L2 -360 3066 2957 6 1491 514 280 0 53 chr12 118853774 118853786 -2403744 - B1_Mus1 SINE Alu -4 144 136 6 1491 251 28 28 0 chr12 118853786 118853822 -2403708 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 6 1491 651 246 0 0 chr12 118853822 118853941 -2403589 - B1_Mur1 SINE Alu -13 136 19 6 1491 296 262 0 16 chr12 118854133 118854195 -2403335 - ID2 SINE ID -18 65 5 6 1491 1174 251 50 11 chr12 118854246 118854524 -2403006 + B4A SINE B4 4 292 0 6 1491 267 291 0 0 chr12 118854607 118854662 -2402868 + B4A SINE B4 238 292 0 6 1491 216 333 0 12 chr12 118854704 118854786 -2402744 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1491 258 224 30 0 chr12 118855087 118855154 -2402376 - L1MD1 LINE L1 -19 6223 6155 6 1491 386 313 184 18 chr12 118855167 118855385 -2402145 - Lx8 LINE L1 -2 7471 7218 6 1491 3273 174 55 24 chr12 118855614 118856234 -2401296 - Lx5 LINE L1 -11 7039 6401 6 1491 574 254 74 0 chr12 118856232 118856421 -2401109 - L1MD1 LINE L1 -288 5954 5752 6 1491 412 244 142 0 chr12 118856430 118856557 -2400973 - L1MD1 LINE L1 -869 5277 5133 6 1491 418 309 36 0 chr12 118856557 118856667 -2400863 + PB1D7 SINE Alu 1 114 -6 6 1491 293 296 114 52 chr12 118856734 118856944 -2400586 + Lx8 LINE L1 7249 7471 -2 6 1491 501 308 53 82 chr12 118857031 118857371 -2400159 - L1MD1 LINE L1 -1017 5129 4800 6 1491 617 271 36 80 chr12 118857507 118857732 -2399798 - ID_B1 SINE B4 -8 216 2 6 1491 309 262 9 78 chr12 118857922 118858038 -2399492 + HAL1-3A_ME LINE L1 1939 2046 -812 6 1491 387 276 0 10 chr12 118858135 118858234 -2399296 + BC1_Mm scRNA scRNA 2 99 -53 6 1491 313 323 101 25 chr12 118858235 118858394 -2399136 - L1MC1 LINE L1 -309 6024 5854 6 1491 226 102 122 65 chr12 118858506 118858603 -2398927 - B2_Mm2 SINE B2 -1 194 67 6 1491 857 98 19 0 chr12 118858635 118858765 -2398765 - B2_Mm1t SINE B2 -13 180 48 6 1491 377 323 6 0 chr12 118858973 118859134 -2398396 - L1MD LINE L1 -2560 5435 5274 6 1491 1426 236 143 22 chr12 118859130 118859668 -2397862 - L1MC1 LINE L1 -924 5222 4620 6 1491 918 154 14 14 chr12 118862734 118862879 -2394651 + B1_Mur4 SINE Alu 2 146 -4 6 1491 279 149 0 21 chr12 118863768 118863816 -2393714 + C-rich Low_complexity Low_complexity 5 51 0 6 1491 524 190 11 44 chr12 118863816 118863998 -2393532 + CT-rich Low_complexity Low_complexity 3 178 0 6 1491 725 68 19 0 chr12 118864985 118865088 -2392442 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 6 1491 25 0 0 0 chr12 118865661 118865686 -2391844 + AT_rich Low_complexity Low_complexity 1 25 0 6 1491 206 287 98 83 chr12 118867376 118867509 -2390021 + MER5A DNA MER1_type 30 164 -25 6 1491 382 159 48 24 chr12 118867687 118867771 -2389759 + URR1B DNA MER1_type 140 225 0 6 1491 25 0 0 0 chr12 118868063 118868088 -2389442 + AT_rich Low_complexity Low_complexity 1 25 0 6 1491 23 0 0 0 chr12 118868181 118868204 -2389326 + AT_rich Low_complexity Low_complexity 1 23 0 6 1491 347 0 0 23 chr12 118868206 118868250 -2389280 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1491 1410 276 58 61 chr12 118868437 118868993 -2388537 - Lx9 LINE L1 -390 7254 6701 6 1491 307 280 0 0 chr12 118869008 118869083 -2388447 + L1MA7 LINE L1 5853 5927 -385 6 1491 200 128 0 25 chr12 118869090 118869130 -2388400 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1491 482 255 119 48 chr12 118869163 118869414 -2388116 + L1MA7 LINE L1 5952 6220 -71 6 1491 269 312 96 59 chr12 118869435 118869571 -2387959 + MER2B DNA MER2_type 25 165 -171 6 1491 521 329 97 0 chr12 118869678 118869906 -2387624 + MER2 DNA MER2_type 82 331 -14 6 1491 522 272 47 40 chr12 118871598 118871851 -2385679 + L1M2 LINE L1 4425 4679 -1464 6 1491 824 264 113 43 chr12 118871854 118872409 -2385121 + L1M2 LINE L1 4841 5423 -936 6 1491 1146 218 12 0 chr12 118872451 118872699 -2384831 - BGLII_B LTR ERVK 0 441 191 6 1491 385 265 74 146 chr12 118872789 118873173 -2384357 + L1M2 LINE L1 5483 5836 -464 6 1491 2184 278 90 51 chr12 118873170 118873262 -2384268 + Lx8 LINE L1 6588 6666 -807 6 1491 1266 49 0 0 chr12 118873262 118873406 -2384124 + B1_Mus2 SINE Alu 2 145 -2 6 1491 2184 278 90 51 chr12 118873406 118874159 -2383371 + Lx8 LINE L1 6667 7466 -7 6 1491 883 147 131 29 chr12 118874355 118874530 -2383000 + B2_Mm2 SINE B2 1 193 -2 6 1491 247 322 35 0 chr12 118875972 118876059 -2381471 + MIRc SINE MIR 65 154 -114 6 1491 390 21 0 0 chr12 118877622 118877669 -2379861 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1491 482 231 10 0 chr12 118878962 118879066 -2378464 + B1F SINE Alu 23 127 -22 6 1491 336 233 10 0 chr12 118879072 118879170 -2378360 + B1F SINE Alu 66 142 -5 6 1491 1107 216 10 0 chr12 118879299 118879503 -2378027 + B3 SINE B2 1 206 -10 6 1491 1749 209 26 18 chr12 118879569 118879954 -2377576 - L1_Rod LINE L1 -13 5834 5447 6 1491 461 283 33 87 chr12 118879967 118880242 -2377288 + Lx9 LINE L1 7256 7515 -129 6 1491 222 194 0 0 chr12 118880244 118880280 -2377250 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1491 660 180 24 12 chr12 118880280 118880449 -2377081 + (TATATG)n Simple_repeat Simple_repeat 6 176 0 6 1491 623 233 0 4 chr12 118880428 118880704 -2376826 + (TG)n Simple_repeat Simple_repeat 1 274 0 6 1491 744 179 0 0 chr12 118881835 118881986 -2375544 + (TGAA)n Simple_repeat Simple_repeat 4 154 0 6 1491 646 146 82 0 chr12 118882040 118882150 -2375380 + B1_Mur4 SINE Alu 24 142 -8 6 1492 3460 188 12 18 chr12 118882514 118883180 -2374350 - Lx5 LINE L1 -467 6583 5922 6 1492 227 358 72 39 chr12 118883496 118883676 -2373854 + L2 LINE L2 2576 2761 -658 6 1492 274 275 0 0 chr12 118884060 118884129 -2373401 - RSINE1 SINE B4 -94 71 3 6 1492 1447 89 26 0 chr12 118884565 118884755 -2372775 + B2_Mm2 SINE B2 1 195 0 6 1492 357 93 0 0 chr12 118884914 118884968 -2372562 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1492 263 134 30 0 chr12 118884968 118885035 -2372495 + (CAGAGA)n Simple_repeat Simple_repeat 3 71 0 6 1492 21 0 0 0 chr12 118885191 118885212 -2372318 + AT_rich Low_complexity Low_complexity 1 21 0 6 1492 486 325 188 16 chr12 118885750 118886006 -2371524 + Tigger7 DNA MER2_type 7 306 -2185 6 1492 944 262 128 12 chr12 118886009 118886330 -2371200 + Tigger7 DNA MER2_type 2133 2490 -1 6 1492 230 246 14 0 chr12 118886350 118886419 -2371111 + L1ME2z LINE L1 6252 6321 -123 6 1492 218 119 0 45 chr12 118886465 118886509 -2371021 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 6 1492 382 215 51 0 chr12 118887364 118887443 -2370087 + ID4_ SINE ID 1 83 0 6 1492 180 0 0 0 chr12 118887790 118887810 -2369720 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1492 231 61 0 0 chr12 118887811 118887844 -2369686 + (ATG)n Simple_repeat Simple_repeat 1 33 0 6 1492 276 282 28 0 chr12 118887900 118887971 -2369559 - MIR SINE MIR -180 82 10 6 1492 744 248 74 17 chr12 118888081 118888099 -2369431 + ID SINE ID 1 26 -198 6 1492 279 266 0 15 chr12 118888099 118888164 -2369366 + ID4_ SINE ID 18 81 -2 6 1492 744 248 74 17 chr12 118888164 118888296 -2369234 + ID_B1 SINE B4 27 224 0 6 1492 384 268 0 0 chr12 118888554 118888696 -2368834 + (TG)n Simple_repeat Simple_repeat 2 143 0 6 1492 407 293 24 50 chr12 118888697 118888853 -2368677 - B4A SINE B4 0 165 2 7 1492 366 23 0 0 chr12 118889778 118889821 -2367709 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1492 753 160 77 0 chr12 118890561 118890655 -2366875 + URR1A DNA MER1_type 59 153 -73 7 1492 198 0 0 0 chr12 118890655 118890677 -2366853 + (TGGGGG)n Simple_repeat Simple_repeat 5 26 0 7 1492 753 160 77 0 chr12 118890677 118890738 -2366792 + URR1A DNA MER1_type 154 224 -2 7 1492 369 0 0 0 chr12 118892175 118892216 -2365314 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1492 3537 157 131 19 chr12 118892223 118892322 -2365208 - RMER1A Other Other -16 1014 910 7 1492 486 0 0 0 chr12 118892322 118892376 -2365154 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1492 3537 185 127 25 chr12 118892376 118893050 -2364480 - RMER1A Other Other -121 909 43 7 1492 185 0 40 0 chr12 118893320 118893345 -2364185 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 7 1492 29 0 0 0 chr12 118893412 118893441 -2364089 + AT_rich Low_complexity Low_complexity 1 29 0 7 1492 243 0 0 0 chr12 118893477 118893504 -2364026 + (TA)n Simple_repeat Simple_repeat 1 27 0 7 1492 27 0 0 0 chr12 118893533 118893560 -2363970 + AT_rich Low_complexity Low_complexity 1 27 0 7 1492 2506 212 75 106 chr12 118893568 118893712 -2363818 - Lx7 LINE L1 0 7696 7553 7 1492 669 173 47 0 chr12 118893712 118893839 -2363691 + B1_Mur4 SINE Alu 5 137 -13 7 1492 285 51 0 0 chr12 118893843 118893882 -2363648 + (CAA)n Simple_repeat Simple_repeat 2 40 0 7 1492 2506 212 75 106 chr12 118893882 118893893 -2363637 - Lx7 LINE L1 -144 7552 7533 7 1492 428 0 0 19 chr12 118893893 118893946 -2363584 + (TAA)n Simple_repeat Simple_repeat 2 53 0 7 1492 2506 212 75 106 chr12 118893946 118894587 -2362943 - Lx7 LINE L1 -164 7532 6923 7 1492 231 383 104 9 chr12 118894621 118894832 -2362698 + L2a LINE L2 2915 3145 -281 7 1492 441 170 21 18 chr12 118894917 118895207 -2362323 + (TCTCTG)n Simple_repeat Simple_repeat 1 291 0 7 1492 444 51 0 0 chr12 118895209 118895268 -2362262 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1492 194 381 79 18 chr12 118895449 118895676 -2361854 + L3 LINE CR1 4167 4407 -82 7 1492 180 111 0 0 chr12 118898559 118898586 -2358944 + (TTG)n Simple_repeat Simple_repeat 1 27 0 7 1492 4037 70 2 26 chr12 118899388 118899931 -2357599 - L1_Mus1 LINE L1 0 6567 6038 7 1492 217 333 0 0 chr12 118900331 118900412 -2357118 - L2c LINE L2 -257 3130 3050 7 1492 287 330 27 0 chr12 118900851 118900963 -2356567 - PB1D10 SINE Alu -1 116 2 7 1492 192 77 0 0 chr12 118901824 118901850 -2355680 + (GGAGAA)n Simple_repeat Simple_repeat 2 27 0 7 1492 582 292 77 0 chr12 118905275 118905470 -2352060 - ID_B1 SINE B4 -8 216 7 7 1492 329 243 14 0 chr12 118907138 118907208 -2350322 + ID4_ SINE ID 2 72 -11 7 1492 345 62 0 0 chr12 118907241 118907289 -2350241 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1492 279 0 87 0 chr12 118908063 118908109 -2349421 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 7 1492 1323 259 19 33 chr12 118910638 118911001 -2346529 - ORR1E LTR MaLR 0 359 2 7 1492 180 0 0 0 chr12 118911112 118911132 -2346398 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1492 414 0 0 0 chr12 118911538 118911584 -2345946 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 7 1492 225 0 0 0 chr12 118912030 118912055 -2345475 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1492 21 0 0 0 chr12 118912178 118912199 -2345331 + AT_rich Low_complexity Low_complexity 1 21 0 7 1492 197 132 26 0 chr12 118912540 118912578 -2344952 + GA-rich Low_complexity Low_complexity 4 42 0 7 1492 201 39 0 0 chr12 118912994 118913020 -2344510 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1492 1142 75 0 7 chr12 118913340 118913488 -2344042 + B1_Mus1 SINE Alu 2 148 0 7 1492 393 22 0 0 chr12 118913808 118913854 -2343676 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 7 1492 825 207 7 0 chr12 118913896 118914041 -2343489 - B1_Mus1 SINE Alu 0 148 3 7 1492 208 341 0 12 chr12 118914205 118914288 -2343242 - MIRb SINE MIR -132 136 55 7 1492 312 48 0 0 chr12 118915231 118915273 -2342257 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1492 665 229 11 3 chr12 118916547 118916927 -2340603 + CT-rich Low_complexity Low_complexity 1 383 0 7 1492 241 258 65 0 chr12 118917790 118917852 -2339678 - ID4_ SINE ID -15 68 3 7 1492 233 364 27 27 chr12 118918393 118918613 -2338917 + MIR SINE MIR 41 260 -2 7 1492 189 312 38 83 chr12 118919994 118920151 -2337379 - L2c LINE L2 -21 3366 3217 7 1492 780 289 199 28 chr12 118921499 118921962 -2335568 - MER90 LTR ERV1 -17 558 17 7 1492 1250 290 137 27 chr12 118922019 118922575 -2334955 - MER21B LTR ERV1 -12 851 235 7 1492 869 117 31 0 chr12 118923607 118923770 -2333760 + (TCCC)n Simple_repeat Simple_repeat 3 170 0 7 1492 232 273 13 13 chr12 118923858 118923936 -2333594 - PB1D10 SINE Alu -10 107 30 7 1492 689 25 198 17 chr12 118926642 118926759 -2330771 + B1_Mus1 SINE Alu 2 147 -1 7 1492 243 103 0 0 chr12 118926760 118926799 -2330731 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1492 241 287 19 19 chr12 118927193 118927296 -2330234 + CT-rich Low_complexity Low_complexity 2 104 0 7 1492 335 41 20 0 chr12 118930684 118930733 -2326797 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 7 1492 764 160 15 0 chr12 118930733 118930864 -2326666 - B1_Mur2 SINE Alu -11 138 6 7 1492 303 255 18 97 chr12 118930764 118930877 -2326653 - MT2B LTR ERVL -343 258 155 7 1492 2258 92 107 2 chr12 118931750 118932144 -2325386 - BGLII_B LTR ERVK 0 441 7 7 1492 1074 180 66 9 chr12 118932349 118932562 -2324968 + URR1B DNA MER1_type 1 225 0 7 1492 284 272 38 53 chr12 118932897 118933029 -2324501 - BC1_Mm scRNA scRNA -22 130 1 7 1492 186 43 0 0 chr12 118933884 118933907 -2323623 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1492 210 291 101 73 chr12 118934235 118934413 -2323117 - L2a LINE L2 0 3426 3244 7 1492 351 336 28 0 chr12 118936100 118936207 -2321323 - PB1D10 SINE Alu -7 110 1 7 1492 529 283 105 0 chr12 118936207 118936270 -2321260 - ID SINE ID -143 81 3 7 1492 1197 109 104 0 chr12 118936717 118936919 -2320611 + URR1B DNA MER1_type 3 225 0 7 1492 355 186 6 25 chr12 118937481 118937641 -2319889 + CT-rich Low_complexity Low_complexity 2 158 0 7 1492 202 264 34 22 chr12 118937887 118937976 -2319554 + CT-rich Low_complexity Low_complexity 3 92 0 7 1492 547 238 135 76 chr12 118938570 118938911 -2318619 - RLTR26 LTR ERVK -78 564 204 7 1492 240 325 0 12 chr12 118939995 118940076 -2317454 - PB1D10 SINE Alu 0 117 38 7 1492 1687 31 0 0 chr12 118941245 118941437 -2316093 - B2_Mm1t SINE B2 0 193 2 7 1492 315 172 102 13 chr12 118941799 118941888 -2315642 - B1F SINE Alu -15 105 9 7 1492 678 58 0 0 chr12 118942378 118942465 -2315065 + (TC)n Simple_repeat Simple_repeat 2 88 0 7 1492 369 0 0 0 chr12 118943113 118943154 -2314376 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 7 1492 542 15 0 15 chr12 118943526 118943594 -2313936 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 7 1492 2335 244 42 62 chr12 118943632 118944323 -2313207 - Lx7 LINE L1 -314 7382 6706 7 1492 21 0 0 0 chr12 118945189 118945210 -2312320 + AT_rich Low_complexity Low_complexity 1 21 0 7 1492 216 0 0 0 chr12 118945682 118945706 -2311824 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1492 591 196 120 160 chr12 118945753 118945978 -2311552 + B3 SINE B2 1 216 0 7 1492 243 0 0 0 chr12 118946921 118946948 -2310582 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1492 326 157 14 14 chr12 118948231 118948302 -2309228 - HAL1-3A_ME LINE L1 -812 2046 1976 7 1492 320 232 7 0 chr12 118948302 118948453 -2309077 + (TG)n Simple_repeat Simple_repeat 2 153 0 7 1492 609 171 6 11 chr12 118948523 118948700 -2308830 + (TG)n Simple_repeat Simple_repeat 1 176 0 7 1492 323 45 23 0 chr12 118948701 118948745 -2308785 - HAL1-3A_ME LINE L1 -847 2011 1967 7 1492 23 54 0 0 chr12 118948998 118949035 -2308495 + AT_rich Low_complexity Low_complexity 1 37 0 7 1492 393 75 0 0 chr12 118949326 118949379 -2308151 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1492 375 262 70 20 chr12 118949443 118949578 -2307952 + PB1D10 SINE Alu 3 145 -4 7 1492 325 252 107 9 chr12 118949574 118949686 -2307844 + B4 SINE B4 43 165 -127 7 1492 22 0 0 0 chr12 118950803 118950825 -2306705 + AT_rich Low_complexity Low_complexity 1 22 0 7 1492 258 32 0 0 chr12 118951094 118951125 -2306405 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 7 1492 439 189 44 0 chr12 118951349 118951439 -2306091 + PB1D10 SINE Alu 10 103 -14 7 1492 270 317 50 70 chr12 118951795 118952053 -2305477 - L1M5 LINE L1 -237 5887 5635 7 1492 26 0 0 0 chr12 118952884 118952910 -2304620 + AT_rich Low_complexity Low_complexity 1 26 0 7 1492 265 299 13 13 chr12 118953625 118953703 -2303827 - ID4_ SINE ID -4 79 2 7 1492 225 0 0 0 chr12 118955166 118955191 -2302339 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1492 189 0 0 0 chr12 118955191 118955211 -2302319 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1492 388 258 161 0 chr12 118956072 118956196 -2301334 - B1F SINE Alu 0 149 6 7 1492 201 175 0 0 chr12 118956239 118956279 -2301251 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 7 1492 563 255 144 57 chr12 118956303 118956532 -2300998 - MTD LTR MaLR -20 399 151 7 1492 244 297 0 51 chr12 118960913 118960991 -2296539 + tRNA-Ala-GCA tRNA tRNA 1 74 -1 7 1492 746 234 94 20 chr12 118961095 118961296 -2296234 + B3 SINE B2 1 216 0 7 1492 559 251 20 10 chr12 118961399 118961581 -2295949 - RLTR11B LTR ERVK -32 496 284 7 1492 630 176 0 0 chr12 118961695 118961814 -2295716 + CT-rich Low_complexity Low_complexity 2 120 0 7 1492 794 250 63 75 chr12 118961814 118961875 -2295655 - RLTR11B LTR ERVK -168 273 211 7 1492 194 0 0 37 chr12 118961875 118961902 -2295628 + (TTCTCC)n Simple_repeat Simple_repeat 5 30 0 7 1492 794 187 64 69 chr12 118961902 118962116 -2295414 - RLTR11B LTR ERVK -238 215 3 7 1492 232 161 179 0 chr12 118962671 118962727 -2294803 + RMER16 LTR ERVK 42 107 -426 8 1492 394 246 66 51 chr12 118963733 118963870 -2293660 + L1M5 LINE L1 5575 5713 -411 8 1492 333 0 0 0 chr12 118964582 118964619 -2292911 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1492 682 58 154 10 chr12 118965999 118966103 -2291427 + PB1D9 SINE Alu 1 119 -1 8 1492 226 224 15 0 chr12 118966840 118966907 -2290623 + G-rich Low_complexity Low_complexity 2 69 0 8 1492 230 329 96 20 chr12 118968329 118968385 -2289145 + MER5A DNA MER1_type 7 69 -120 8 1492 496 270 9 0 chr12 118968385 118968500 -2289030 + PB1 SINE Alu 4 119 -8 8 1492 230 329 96 20 chr12 118968500 118968589 -2288941 + MER5A DNA MER1_type 70 163 -26 8 1492 351 44 0 0 chr12 118969254 118969299 -2288231 + (TTA)n Simple_repeat Simple_repeat 3 47 0 8 1492 197 309 30 89 chr12 118969920 118970055 -2287475 + L2c LINE L2 3245 3371 -16 8 1492 687 262 86 0 chr12 118970107 118970317 -2287213 + B4A SINE B4 3 230 -62 8 1492 479 211 35 0 chr12 118970318 118970432 -2287098 + PB1D9 SINE Alu 3 120 0 8 1492 220 279 184 78 chr12 118970325 118970504 -2287026 + B4A SINE B4 95 292 0 8 1492 396 350 44 22 chr12 118970682 118970874 -2286656 - MER2 DNA MER2_type 0 345 149 8 1492 996 189 76 9 chr12 118970874 118971098 -2286432 - RLTR42 LTR ERVK 0 239 1 8 1492 9380 138 85 23 chr12 118971098 118974283 -2283247 - RLTR42-int LTR ERVK 0 5522 2096 8 1492 2417 153 88 26 chr12 118974347 118974804 -2282726 - RLTR42-int LTR ERVK -3858 1664 1180 8 1492 337 238 29 32 chr12 118976850 118976971 -2280559 + B1F SINE Alu 1 149 0 8 1492 373 228 34 42 chr12 118977178 118977297 -2280233 - ID_B1 SINE B4 -2 222 105 8 1492 324 0 0 0 chr12 118977385 118977421 -2280109 + (TAGG)n Simple_repeat Simple_repeat 1 36 0 8 1492 794 117 26 34 chr12 118977421 118977692 -2279838 + (TAGA)n Simple_repeat Simple_repeat 1 268 0 8 1492 315 0 0 0 chr12 118978670 118978705 -2278825 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 8 1492 1166 81 0 6 chr12 118978705 118978866 -2278664 - B2_Mm2 SINE B2 -34 161 2 8 1492 313 308 37 0 chr12 118979729 118979836 -2277694 - MER58A DNA MER1_type -88 136 26 8 1492 1346 77 0 0 chr12 118980490 118980672 -2276858 - L1_Mus2 LINE L1 0 6566 6385 8 1492 935 70 0 85 chr12 118980672 118980813 -2276717 + L1_Mus2 LINE L1 6244 6372 -194 8 1492 325 304 78 10 chr12 118981494 118981597 -2275933 + PB1D10 SINE Alu 1 110 -7 8 1492 1157 230 70 12 chr12 118981603 118981946 -2275584 + Lx9 LINE L1 7257 7619 -25 8 1492 180 97 0 0 chr12 118982009 118982040 -2275490 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 8 1492 612 253 3 0 chr12 118983848 118984463 -2273067 + (CA)n Simple_repeat Simple_repeat 1 617 0 8 1492 188 352 0 0 chr12 118984764 118984835 -2272695 + MIR SINE MIR 155 225 -37 8 1492 2573 77 44 76 chr12 118985733 118985917 -2271613 - BGLII LTR ERVK 0 421 262 8 1492 1092 89 0 0 chr12 118985917 118986097 -2271433 + (TTC)n Simple_repeat Simple_repeat 1 180 0 8 1492 2573 77 44 76 chr12 118986097 118986347 -2271183 - BGLII LTR ERVK -160 261 1 8 1492 245 250 18 123 chr12 118988762 118988876 -2268654 + MT2B2 LTR ERVL 156 257 -327 8 1492 628 203 8 8 chr12 118988792 118988916 -2268614 + B1F SINE Alu 21 144 -5 8 1492 696 204 0 0 chr12 118988990 118989166 -2268364 + (TG)n Simple_repeat Simple_repeat 1 176 0 8 1492 549 255 103 10 chr12 118989170 118989364 -2268166 - B4A SINE B4 0 292 81 8 1492 345 176 108 21 chr12 118990769 118990862 -2266668 + PB1D10 SINE Alu 3 103 -17 8 1492 1064 105 140 0 chr12 118991089 118991260 -2266270 + Lx LINE L1 6456 6650 -4 8 1492 259 270 33 11 chr12 118991397 118991487 -2266043 + ID_B1 SINE B4 9 100 -124 8 1492 473 225 73 108 chr12 118992539 118992743 -2264787 + B3A SINE B2 2 198 0 8 1492 21 36 0 0 chr12 118993003 118993031 -2264499 + AT_rich Low_complexity Low_complexity 1 28 0 8 1492 295 210 248 68 chr12 118994117 118994250 -2263280 + MIRc SINE MIR 1 157 -111 8 1492 191 262 0 76 chr12 118996856 118996922 -2260608 + L3 LINE CR1 4428 4488 -1 8 1492 1858 200 87 36 chr12 119001093 119001482 -2256048 - MTD LTR MaLR -8 411 3 1 1492 213 65 0 0 chr12 119001589 119001620 -2255910 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1492 498 61 0 0 chr12 119002399 119002465 -2255065 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1492 3207 186 35 8 chr12 119002466 119003073 -2254457 - Lx9 LINE L1 -225 7419 6797 4 1492 573 242 31 0 chr12 119003137 119003265 -2254265 - B1_Mus1 SINE Alu -1 147 16 5 1492 263 294 81 12 chr12 119003266 119003352 -2254178 - ID_B1 SINE B4 -25 199 108 6 1492 300 171 24 12 chr12 119003627 119003710 -2253820 + T-rich Low_complexity Low_complexity 1 84 0 7 1492 407 169 22 0 chr12 119004900 119004989 -2252541 + C-rich Low_complexity Low_complexity 1 91 0 8 1492 857 183 0 7 chr12 119004994 119005137 -2252393 - B1_Mus2 SINE Alu -5 142 1 9 1492 2068 131 96 48 chr12 119005389 119005658 -2251872 - ORR1B1 LTR MaLR 0 394 137 1 1492 3012 26 3 11 chr12 119005658 119006007 -2251523 - ORR1A0 LTR MaLR 0 346 1 1 1492 2068 131 96 48 chr12 119006007 119006113 -2251417 - ORR1B1 LTR MaLR -258 136 1 1 1492 433 261 77 0 chr12 119006217 119006347 -2251183 + B1F SINE Alu 1 140 -9 1 1492 249 229 48 24 chr12 119006449 119006574 -2250956 + ORR1B1-int LTR MaLR 632 759 -750 1 1492 899 143 23 0 chr12 119006473 119006606 -2250924 + B1_Mus2 SINE Alu 11 146 -1 1 1492 690 273 0 6 chr12 119006684 119006846 -2250684 - RSINE1 SINE B4 -1 164 4 1 1492 297 195 107 83 chr12 119006964 119007048 -2250482 - PB1D10 SINE Alu 0 117 32 1 1492 282 321 12 12 chr12 119007166 119007248 -2250282 - MER81 DNA AcHobo 0 114 33 1 1492 726 43 0 0 chr12 119007361 119007455 -2250075 + (TC)n Simple_repeat Simple_repeat 1 94 0 1 1492 402 21 0 0 chr12 119007455 119007501 -2250029 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1492 210 143 0 0 chr12 119007616 119007651 -2249879 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2 1492 441 0 0 0 chr12 119009010 119009059 -2248471 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 2 1492 750 212 0 0 chr12 119009064 119009201 -2248329 - B1F SINE Alu -6 143 7 2 1492 392 300 36 0 chr12 119010236 119010346 -2247184 - MLT1C LTR MaLR -243 224 111 2 1492 277 285 148 11 chr12 119010454 119010560 -2246970 - MIR SINE MIR -128 140 21 2 1492 270 283 152 0 chr12 119010560 119010652 -2246878 - MER5A DNA MER1_type -32 157 52 2 1492 235 277 30 15 chr12 119010762 119010828 -2246702 - MER5A DNA MER1_type -56 133 67 2 1492 187 272 135 42 chr12 119010909 119011005 -2246525 - MER5B DNA MER1_type -25 153 49 2 1492 288 53 0 0 chr12 119011653 119011691 -2245839 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1492 281 269 71 71 chr12 119011721 119011805 -2245725 + Arthur1 DNA Tip100 576 659 -3288 2 1492 238 322 199 11 chr12 119011806 119011982 -2245548 + Arthur1 DNA Tip100 3315 3523 -424 2 1492 223 242 108 108 chr12 119012028 119012130 -2245400 + B3A SINE B2 81 182 -16 2 1492 206 296 0 0 chr12 119012130 119012174 -2245356 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1492 243 203 156 39 chr12 119012372 119012449 -2245081 + Arthur1 DNA Tip100 3769 3854 -93 2 1492 982 156 127 66 chr12 119012485 119012698 -2244832 + URR1A DNA MER1_type 1 226 0 3 186 373 286 66 29 chr12 119013363 119013500 -2244030 + ID_B1 SINE B4 81 222 -2 3 1493 1377 224 103 9 chr12 119014448 119014777 -2242753 + MTEa LTR MaLR 12 371 -8 3 1493 404 238 29 10 chr12 119015149 119015251 -2242279 - PB1D7 SINE Alu -6 114 11 3 1493 344 301 10 10 chr12 119015551 119015655 -2241875 - Tigger5 DNA MER2_type -6 2400 2297 3 1493 189 94 0 0 chr12 119016481 119016513 -2241017 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 3 1493 276 127 0 0 chr12 119016528 119016583 -2240947 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1493 764 292 78 52 chr12 119016748 119017131 -2240399 + Lx8 LINE L1 5604 5996 -1477 3 1493 595 213 26 58 chr12 119017141 119017331 -2240199 + ORR1B2 LTR MaLR 1 121 -273 3 1493 1822 161 50 9 chr12 119017331 119017702 -2239828 + ORR1B2 LTR MaLR 1 392 -2 3 1493 1177 81 0 0 chr12 119019210 119019358 -2238172 + B1_Mus1 SINE Alu 1 148 0 4 1493 359 273 23 0 chr12 119019441 119019529 -2238001 - Tigger5 DNA MER2_type -2265 141 52 3 1493 289 339 26 9 chr12 119019782 119019895 -2237635 - Tigger5 DNA MER2_type -1 2405 2291 4 1493 282 352 9 0 chr12 119019958 119020063 -2237467 - Tigger5 DNA MER2_type -2278 128 23 4 1493 2700 168 12 10 chr12 119020232 119020719 -2236811 - Lx4B LINE L1 -4 7054 6567 4 1493 243 0 0 0 chr12 119020734 119020761 -2236769 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 4 1493 1220 49 0 0 chr12 119020763 119020905 -2236625 - B1_Mus1 SINE Alu -6 142 1 4 1493 2592 35 0 16 chr12 119021143 119021458 -2236072 + L1_Mus1 LINE L1 6258 6567 0 4 1493 333 102 0 0 chr12 119022807 119022866 -2234664 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1493 396 0 0 0 chr12 119022866 119022910 -2234620 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1493 261 0 0 0 chr12 119023258 119023287 -2234243 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1493 251 304 137 0 chr12 119023673 119023775 -2233755 - MER94 DNA AcHobo 0 134 19 4 1493 800 128 8 0 chr12 119023806 119023939 -2233591 + (GAA)n Simple_repeat Simple_repeat 3 136 0 5 1493 1106 149 123 0 chr12 119023963 119024158 -2233372 + URR1A DNA MER1_type 1 219 -7 5 1493 1044 70 0 7 chr12 119024150 119024294 -2233236 + B1_Mus1 SINE Alu 6 148 0 5 1493 606 136 0 0 chr12 119026835 119026967 -2230563 + (TC)n Simple_repeat Simple_repeat 1 132 0 5 1493 288 0 0 0 chr12 119026967 119026999 -2230531 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1493 3292 134 291 24 chr12 119027031 119027746 -2229784 - RMER13B LTR ERVK 0 908 3 5 1493 904 260 73 104 chr12 119027752 119027824 -2229706 - B4 SINE B4 -13 279 230 5 1493 625 204 202 6 chr12 119027824 119027997 -2229533 - B3 SINE B2 -5 211 5 5 1493 904 260 73 104 chr12 119027997 119028212 -2229318 - B4 SINE B4 -63 229 1 5 1493 187 409 0 38 chr12 119028231 119028363 -2229167 + MIR SINE MIR 3 129 -133 5 1493 996 208 92 96 chr12 119028425 119028718 -2228812 + B4A SINE B4 1 292 0 5 1493 180 0 0 0 chr12 119028718 119028738 -2228792 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 6 1493 217 270 172 16 chr12 119028764 119028828 -2228702 + ID SINE ID 2 75 -149 6 1493 4325 57 5 54 chr12 119028863 119028984 -2228546 + ORR1A1-int LTR MaLR 885 1005 -787 6 1493 189 74 0 0 chr12 119028984 119029011 -2228519 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1493 4325 57 5 54 chr12 119029011 119029030 -2228500 + ORR1A1-int LTR MaLR 1006 1006 -786 6 1493 1628 32 21 0 chr12 119029030 119029219 -2228311 - B2_Mm1a SINE B2 0 193 1 6 1493 4325 57 5 54 chr12 119029219 119029693 -2227837 + ORR1A1-int LTR MaLR 1006 1470 -322 6 1493 1188 49 7 0 chr12 119029820 119029962 -2227568 - B1_Mus2 SINE Alu 0 147 5 6 1493 818 249 134 21 chr12 119030580 119030910 -2226620 - MTE2a LTR MaLR -8 411 25 6 1493 261 139 0 0 chr12 119032323 119032366 -2225164 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1493 2278 182 10 12 chr12 119032671 119033082 -2224448 - MTD LTR MaLR -8 411 2 6 1493 307 67 52 26 chr12 119035376 119035453 -2222077 + (TTG)n Simple_repeat Simple_repeat 3 81 0 6 1493 471 204 152 26 chr12 119035777 119035928 -2221602 + MER5A DNA MER1_type 20 189 0 7 1493 296 276 69 0 chr12 119036394 119036481 -2221049 - MTE-int LTR MaLR -600 980 888 7 1493 4436 14 2 12 chr12 119036529 119037027 -2220503 + MT2_Mm LTR ERVL 1 493 0 7 1493 41512 16 14 0 chr12 119037027 119042314 -2215216 + MERVL-int LTR ERVL 1 5360 -125 7 1493 384 179 46 35 chr12 119042314 119042401 -2215129 + ORR1A3-int LTR MaLR 553 640 -1323 7 1493 319 0 0 0 chr12 119042401 119042439 -2215091 + MERVL-int LTR ERVL 5448 5485 0 7 1493 4436 14 2 12 chr12 119042439 119042937 -2214593 + MT2_Mm LTR ERVL 1 493 0 7 1493 932 26 9 0 chr12 119043427 119043542 -2213988 + (TCTCCC)n Simple_repeat Simple_repeat 3 118 0 7 1493 189 0 0 0 chr12 119043542 119043563 -2213967 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1493 271 348 20 74 chr12 119046295 119046444 -2211086 + B4A SINE B4 2 142 -150 7 1493 518 272 147 0 chr12 119046558 119046694 -2210836 + B4A SINE B4 124 279 -13 7 1493 252 0 0 0 chr12 119047484 119047512 -2210018 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1493 183 219 88 99 chr12 119047639 119047730 -2209800 + L3 LINE CR1 3090 3179 -1310 7 1493 900 310 57 24 chr12 119049534 119049664 -2207866 - MER2 DNA MER2_type 0 345 221 7 1493 429 70 0 0 chr12 119049664 119049721 -2207809 + (TA)n Simple_repeat Simple_repeat 1 57 0 8 1493 900 310 57 24 chr12 119049721 119049924 -2207606 - MER2 DNA MER2_type -125 220 1 7 1493 333 0 0 0 chr12 119050633 119050670 -2206860 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1493 285 163 0 0 chr12 119052054 119052097 -2205433 - ID_B1 SINE B4 -58 166 124 8 1493 1237 80 44 28 chr12 119052295 119052476 -2205054 + B2_Mm2 SINE B2 4 187 -8 8 1493 943 233 37 5 chr12 119052938 119053154 -2204376 - ID_B1 SINE B4 -1 223 1 8 1493 290 291 43 0 chr12 119053296 119053385 -2204145 + PB1D10 SINE Alu 18 112 -8 8 1493 596 338 0 6 chr12 119053491 119053655 -2203875 + B3A SINE B2 2 164 -34 8 1493 229 301 19 10 chr12 119053684 119053788 -2203742 + (CA)n Simple_repeat Simple_repeat 1 105 0 8 1493 266 0 29 0 chr12 119054140 119054174 -2203356 + (CAA)n Simple_repeat Simple_repeat 2 36 0 8 1493 259 208 19 0 chr12 119054230 119054283 -2203247 + B3A SINE B2 1 54 -144 8 1493 915 166 35 51 chr12 119054294 119054491 -2203039 - B2_Mm2 SINE B2 0 195 2 9 1493 252 0 0 0 chr12 119054502 119054530 -2203000 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1493 253 194 44 15 chr12 119055014 119055082 -2202448 + T-rich Low_complexity Low_complexity 3 72 0 9 1493 354 138 0 0 chr12 119055115 119055173 -2202357 + (GA)n Simple_repeat Simple_repeat 2 59 0 9 1493 318 330 82 88 chr12 119056081 119056387 -2201143 + ORR1E LTR MaLR 52 355 -4 9 1493 499 295 78 39 chr12 119056840 119057020 -2200510 - B4A SINE B4 -2 290 104 9 1493 22 0 0 0 chr12 119058511 119058533 -2198997 + AT_rich Low_complexity Low_complexity 1 22 0 9 1493 288 211 25 38 chr12 119059722 119059801 -2197729 - L1MC4a LINE L1 -27 7855 7778 9 1493 427 296 124 35 chr12 119060581 119060928 -2196602 - L1MC4a LINE L1 -364 7678 7301 9 1493 985 274 80 71 chr12 119061113 119061648 -2195882 - L1MC4a LINE L1 -897 6985 6446 9 1493 1139 96 0 0 chr12 119061720 119061887 -2195643 - ORR1A2 LTR MaLR -160 167 1 9 1493 237 108 0 0 chr12 119061933 119061970 -2195560 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1493 248 0 31 0 chr12 119061970 119062002 -2195528 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1493 482 285 41 0 chr12 119062016 119062139 -2195391 - B3A SINE B2 -69 129 2 1 1493 2320 128 70 13 chr12 119062206 119062579 -2194951 + ORR1B1 LTR MaLR 1 394 0 1 1493 240 254 18 0 chr12 119062584 119062639 -2194891 - L1MC4a LINE L1 -2215 5667 5612 9 1493 301 289 175 16 chr12 119062682 119062865 -2194665 - L1MC4a LINE L1 -2352 5530 5319 9 1493 409 178 14 0 chr12 119063096 119063169 -2194361 - tRNA-Lys-AAA tRNA tRNA -2 74 1 1 1493 337 318 25 20 chr12 119063313 119063515 -2194015 - L1M5 LINE L1 -1385 4761 4559 1 1493 326 258 46 23 chr12 119063844 119063975 -2193555 - L1_Mur1 LINE L1 -1972 3914 3781 1 1493 222 37 0 0 chr12 119064236 119064263 -2193267 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1493 1285 135 23 0 chr12 119064368 119064583 -2192947 - ORR1B1 LTR MaLR 0 394 175 1 1493 6453 155 58 60 chr12 119064628 119066024 -2191506 - RMER12B LTR ERVK 0 1404 11 1 1493 482 175 28 28 chr12 119066021 119066127 -2191403 - ORR1B1 LTR MaLR -244 150 45 1 1493 421 248 28 0 chr12 119066197 119066306 -2191224 - PB1D9 SINE Alu -8 112 1 1 1493 23 0 0 0 chr12 119066646 119066669 -2190861 + AT_rich Low_complexity Low_complexity 1 23 0 1 1493 294 212 45 0 chr12 119066682 119066748 -2190782 + PB1D10 SINE Alu 3 71 -46 1 1493 752 229 85 45 chr12 119067249 119067450 -2190080 - B3 SINE B2 -7 209 1 1 1493 219 42 20 78 chr12 119067463 119067514 -2190016 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 1 1493 2037 130 24 64 chr12 119067604 119067981 -2189549 + ORR1B2 LTR MaLR 6 367 0 1 1493 1140 182 171 4 chr12 119067985 119068260 -2189270 - MTC LTR MaLR -100 321 1 1 1493 1040 207 14 24 chr12 119068595 119068808 -2188722 + B3 SINE B2 6 216 0 1 1493 1327 105 21 5 chr12 119069717 119069908 -2187622 + B2_Mm2 SINE B2 2 195 0 1 1493 244 286 40 48 chr12 119070652 119070777 -2186753 - L1MB2 LINE L1 -24 6147 6024 1 1493 701 247 151 43 chr12 119070792 119071096 -2186434 - MTE2b LTR MaLR -24 355 19 1 1493 1367 285 67 11 chr12 119071090 119071249 -2186281 - MTE2b-int LTR MaLR -11 1569 1410 1 1493 1390 95 16 0 chr12 119071249 119071438 -2186092 + B2_Mm2 SINE B2 3 194 -1 1 1493 1367 296 70 33 chr12 119071438 119071853 -2185677 - MTE2b-int LTR MaLR -171 1409 683 1 1493 1203 213 4 0 chr12 119072136 119072361 -2185169 - Lx5 LINE L1 -327 6723 6498 1 1493 227 246 66 0 chr12 119073134 119073195 -2184335 - HAL1 LINE L1 -1049 1458 1394 1 1493 731 221 0 126 chr12 119073217 119073440 -2184090 - B3A SINE B2 -1 197 3 1 1493 641 13 13 0 chr12 119073559 119073637 -2183893 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 1 1493 230 279 133 20 chr12 119074193 119074343 -2183187 - HAL1 LINE L1 -1325 1182 1016 1 1493 405 0 0 0 chr12 119074482 119074527 -2183003 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1493 327 49 0 0 chr12 119074527 119074567 -2182963 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1493 882 240 196 59 chr12 119074799 119075273 -2182257 - RMER15 LTR ERVL -3 572 34 1 1493 745 158 11 17 chr12 119075458 119075638 -2181892 + CT-rich Low_complexity Low_complexity 1 179 0 1 1493 25 0 0 0 chr12 119075916 119075941 -2181589 + AT_rich Low_complexity Low_complexity 1 25 0 1 1493 378 204 45 65 chr12 119076255 119076401 -2181129 - MER5A DNA MER1_type -47 142 1 1 1493 1058 254 69 49 chr12 119076994 119077383 -2180147 + RMER13B LTR ERVK 508 904 -4 1 1493 336 240 168 20 chr12 119078876 119079025 -2178505 - RMER15 LTR ERVL -106 469 299 1 1493 647 275 176 38 chr12 119079307 119079658 -2177872 - MER34 LTR ERV1 -41 501 102 1 1493 1197 75 0 0 chr12 119079658 119079819 -2177711 + (TTCTCC)n Simple_repeat Simple_repeat 3 163 0 1 1493 1304 108 5 5 chr12 119079819 119080001 -2177529 - B2_Mm1t SINE B2 -5 188 6 1 1493 647 294 83 49 chr12 119080001 119080071 -2177459 - MER34 LTR ERV1 -441 101 34 1 1493 298 265 79 30 chr12 119080168 119080216 -2177314 - B3 SINE B2 0 216 164 1 1493 306 0 0 0 chr12 119080216 119080250 -2177280 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1493 298 265 79 30 chr12 119080250 119080297 -2177233 - B3 SINE B2 -53 163 116 1 1493 231 94 0 0 chr12 119080297 119080329 -2177201 + ORR1C2 LTR MaLR 1 32 -352 1 1493 372 295 9 18 chr12 119080407 119080521 -2177009 - MTD LTR MaLR -306 113 1 1 1493 265 191 42 56 chr12 119080986 119081058 -2176472 - B1F SINE Alu -71 78 8 1 1493 261 83 0 0 chr12 119082772 119082808 -2174722 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1493 345 278 155 16 chr12 119083644 119083838 -2173692 - ID_B1 SINE B4 -1 223 3 1 1493 233 83 20 59 chr12 119084650 119084701 -2172829 - B1_Mur2 SINE Alu -2 147 99 1 1493 504 184 0 0 chr12 119086014 119086112 -2171418 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1493 799 43 70 0 chr12 119086122 119086237 -2171293 - B1_Mm SINE Alu 0 147 25 1 1493 498 267 14 33 chr12 119087541 119087910 -2169620 + (TGGA)n Simple_repeat Simple_repeat 1 361 0 1 1493 468 246 0 77 chr12 119087926 119088120 -2169410 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1 1493 217 289 0 0 chr12 119089868 119089920 -2167610 + MIRm SINE MIR 220 271 -5 1 1493 238 357 37 31 chr12 119090026 119090188 -2167342 + MLT1I LTR MaLR 63 225 -186 1 1493 219 139 0 0 chr12 119090690 119090726 -2166804 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 1 1493 470 266 23 8 chr12 119090774 119090903 -2166627 - B1F SINE Alu -1 148 18 1 1493 189 0 0 0 chr12 119090931 119090952 -2166578 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1 1493 307 265 176 0 chr12 119090952 119091088 -2166442 - B4A SINE B4 -5 287 128 1 1493 334 246 98 49 chr12 119091114 119091396 -2166134 - L1MB3 LINE L1 -45 6126 5815 1 1493 477 246 88 15 chr12 119091400 119091536 -2165994 - B1_Mm SINE Alu 0 147 2 1 1493 21 0 0 0 chr12 119091685 119091706 -2165824 + AT_rich Low_complexity Low_complexity 1 21 0 1 1493 547 316 192 35 chr12 119092102 119092466 -2165064 - L1M4 LINE L1 -1512 4628 4214 1 1493 348 24 0 0 chr12 119092466 119092507 -2165023 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1493 261 0 0 0 chr12 119092507 119092535 -2164995 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1493 547 303 181 32 chr12 119092535 119093591 -2163939 - L1M4 LINE L1 -1927 4213 2975 1 1493 864 272 124 47 chr12 119093938 119094605 -2162925 - L1M4 LINE L1 -3218 2928 2210 1 1493 236 289 164 0 chr12 119094726 119094830 -2162700 - PB1 SINE Alu -2 125 5 1 1493 195 42 0 0 chr12 119095498 119095522 -2162008 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 1 1493 233 222 46 31 chr12 119095609 119095674 -2161856 + ID4_ SINE ID 1 66 -17 1 1493 279 301 39 0 chr12 119095807 119095910 -2161620 - RMER15 LTR ERVL -37 538 432 1 1493 23 0 0 0 chr12 119096083 119096106 -2161424 + AT_rich Low_complexity Low_complexity 1 23 0 1 1493 311 257 105 0 chr12 119096710 119096815 -2160715 - L1M LINE L1 -793 5386 5271 1 1493 453 304 43 0 chr12 119096875 119097013 -2160517 - B1F SINE Alu 0 149 6 1 1493 503 211 232 12 chr12 119097072 119097240 -2160290 + B4A SINE B4 2 206 -86 1 1493 1268 116 16 5 chr12 119097678 119097869 -2159661 + B2_Mm2 SINE B2 1 193 -2 1 1493 539 224 88 0 chr12 119097891 119098016 -2159514 + B1_Mur1 SINE Alu 3 138 -11 1 1493 523 288 56 6 chr12 119098337 119098498 -2159032 + ID_B1 SINE B4 2 170 -54 1 1493 323 228 98 10 chr12 119098420 119098522 -2159008 + B1F1 SINE Alu 10 120 -29 1 1493 638 177 190 0 chr12 119098821 119098979 -2158551 - URR1B DNA MER1_type 0 225 38 1 1493 225 131 64 21 chr12 119099593 119099640 -2157890 - L1M3 LINE L1 -334 5837 5789 1 1493 401 260 0 3 chr12 119099823 119100468 -2157062 + C-rich Low_complexity Low_complexity 1 643 0 1 1493 387 282 0 7 chr12 119100505 119100816 -2156714 + C-rich Low_complexity Low_complexity 1 308 0 1 1493 2761 143 32 10 chr12 119101511 119102018 -2155512 + RLTR20B2 LTR ERVK 1 518 -42 1 1493 226 254 32 0 chr12 119102302 119102365 -2155165 - L1M2 LINE L1 -367 5930 5866 1 1493 3250 52 10 5 chr12 119102507 119102912 -2154618 + MTB_Mm LTR MaLR 1 407 0 1 1493 487 180 168 1 chr12 119104561 119104686 -2152844 - B1_Mus2 SINE Alu -5 143 1 1 1493 582 207 0 0 chr12 119106489 119106600 -2150930 - B3 SINE B2 -100 116 6 1 1493 201 176 0 0 chr12 119106774 119106808 -2150722 + T-rich Low_complexity Low_complexity 1 34 0 1 1493 708 144 0 17 chr12 119107742 119107862 -2149668 + B1_Mm SINE Alu 1 118 -29 1 1493 567 43 0 0 chr12 119107863 119107933 -2149597 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 1 1493 349 280 134 45 chr12 119107948 119108172 -2149358 - L1MB4 LINE L1 -2 6178 5935 1 1493 735 157 88 15 chr12 119108195 119108331 -2149199 - B1_Mur4 SINE Alu 0 150 5 1 1493 247 307 37 56 chr12 119108346 119108453 -2149077 - PB1D10 SINE Alu -7 110 6 1 1493 204 267 0 0 chr12 119109151 119109196 -2148334 + (TGG)n Simple_repeat Simple_repeat 3 47 0 1 1493 1159 74 0 33 chr12 119109478 119109631 -2147899 + B1_Mus1 SINE Alu 1 148 0 1 1493 29 0 0 0 chr12 119109709 119109738 -2147792 + AT_rich Low_complexity Low_complexity 1 29 0 1 1493 263 233 96 0 chr12 119111725 119111798 -2145732 - B1F2 SINE Alu -61 88 9 1 1493 333 0 0 0 chr12 119114875 119114912 -2142618 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1493 234 265 0 0 chr12 119115041 119115109 -2142421 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1493 187 179 0 25 chr12 119115294 119115334 -2142196 - MIR SINE MIR -129 79 41 1 1493 26 0 0 0 chr12 119116551 119116577 -2140953 + AT_rich Low_complexity Low_complexity 1 26 0 1 1493 274 273 0 0 chr12 119117681 119117736 -2139794 + RSINE1 SINE B4 78 132 -33 1 1493 2336 88 22 3 chr12 119117782 119118103 -2139427 + ORR1A2 LTR MaLR 1 327 0 1 1493 621 265 0 22 chr12 119119579 119119714 -2137816 + B3 SINE B2 1 132 -84 1 1493 226 148 32 32 chr12 119119716 119119779 -2137751 + (TATG)n Simple_repeat Simple_repeat 4 66 0 1 1493 612 190 329 0 chr12 119119798 119119956 -2137574 - B3 SINE B2 -5 211 2 1 1493 961 276 105 19 chr12 119120454 119120816 -2136714 + MTD LTR MaLR 27 419 0 1 1493 673 273 155 97 chr12 119120862 119121211 -2136319 + MTE2b LTR MaLR 10 378 -1 1 1493 1886 138 105 3 chr12 119122279 119122612 -2134918 + ORR1B2 LTR MaLR 1 367 0 2 1493 373 302 0 0 chr12 119122907 119123003 -2134527 + PB1D10 SINE Alu 22 117 0 2 1493 195 100 0 0 chr12 119123005 119123035 -2134495 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1493 28 48 0 0 chr12 119123470 119123512 -2134018 + AT_rich Low_complexity Low_complexity 1 42 0 2 1493 688 233 161 29 chr12 119123973 119124216 -2133314 + B4A SINE B4 2 276 -16 2 1493 233 305 36 45 chr12 119124267 119124377 -2133153 + L1ME3 LINE L1 5198 5306 -840 2 1493 410 0 20 0 chr12 119124400 119124450 -2133080 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2 1493 450 0 0 0 chr12 119124450 119124499 -2133031 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 2 1493 412 309 32 38 chr12 119124931 119125116 -2132414 + L1ME3 LINE L1 5954 6137 -25 2 1493 418 307 67 6 chr12 119125768 119125932 -2131598 + ORR1E LTR MaLR 14 187 -172 2 1493 285 183 0 0 chr12 119127216 119127276 -2130254 + (CAGA)n Simple_repeat Simple_repeat 1 60 0 2 1493 311 219 156 0 chr12 119127641 119127737 -2129793 - PB1D10 SINE Alu -5 112 2 2 1493 316 295 107 59 chr12 119128139 119128409 -2129121 - B4A SINE B4 0 292 10 2 1493 25 0 0 0 chr12 119129508 119129533 -2127997 + AT_rich Low_complexity Low_complexity 1 25 0 2 1493 255 31 0 0 chr12 119129639 119129671 -2127859 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1493 1070 67 0 0 chr12 119129671 119129805 -2127725 - B1_Mm SINE Alu -13 134 1 2 1493 1080 217 19 5 chr12 119129858 119130071 -2127459 + B3 SINE B2 1 216 0 2 1493 681 240 148 31 chr12 119131608 119131884 -2125646 + ORR1D1 LTR MaLR 67 355 -19 2 1493 892 151 27 20 chr12 119132197 119132346 -2125184 - B1_Mur4 SINE Alu 0 150 1 2 1493 490 256 83 83 chr12 119132368 119132560 -2124970 - B3A SINE B2 -5 193 2 2 1493 185 94 31 0 chr12 119132758 119132790 -2124740 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1493 363 245 29 19 chr12 119132836 119132940 -2124590 - RSINE1 SINE B4 -50 115 11 2 1493 185 311 194 0 chr12 119133152 119133255 -2124275 + MIRc SINE MIR 80 202 -66 2 1493 955 272 56 109 chr12 119133560 119133956 -2123574 - MTE2a LTR MaLR -2 377 3 2 1493 9064 118 23 14 chr12 119134322 119134440 -2123090 - Lx2 LINE L1 0 6997 6881 2 1493 186 43 0 0 chr12 119134440 119134463 -2123067 + (C)n Simple_repeat Simple_repeat 1 23 0 2 1493 9064 128 19 18 chr12 119134463 119136159 -2121371 - Lx2 LINE L1 -117 6880 5179 2 1493 5144 144 190 3 chr12 119136102 119136841 -2120689 + L1_Mur2 LINE L1 4021 4942 -935 2 1493 4200 70 0 14 chr12 119136841 119137395 -2120135 - L1Md_F2 LINE L1 0 6582 6037 2 1493 5144 144 190 3 chr12 119137395 119137648 -2119882 + L1_Mur2 LINE L1 4943 5198 -679 2 1493 618 249 91 48 chr12 119137648 119137975 -2119555 - MTD LTR MaLR -2 417 51 2 1493 551 303 103 34 chr12 119138756 119139019 -2118511 - B4A SINE B4 -10 282 2 2 1493 980 256 58 17 chr12 119139057 119139351 -2118179 + ORR1D2 LTR MaLR 64 369 -1 2 1493 980 256 58 17 chr12 119139589 119139883 -2117647 + ORR1D2 LTR MaLR 64 369 -1 2 1493 425 291 29 43 chr12 119140309 119140449 -2117081 + B1F SINE Alu 3 140 -9 2 1493 385 250 0 0 chr12 119140452 119140524 -2117006 + ID4 SINE ID 2 73 -10 2 1493 202 209 29 15 chr12 119140525 119140593 -2116937 + A-rich Low_complexity Low_complexity 3 71 0 2 1493 460 251 130 58 chr12 119141925 119142132 -2115398 - ID_B1 SINE B4 0 224 3 2 1493 256 353 35 0 chr12 119142324 119142440 -2115090 + MLT1J LTR MaLR 77 196 -316 2 1493 567 120 0 0 chr12 119143633 119143650 -2113880 + (A)n Simple_repeat Simple_repeat 1 17 0 2 1493 1226 42 0 0 chr12 119143650 119143794 -2113736 + B1_Mus1 SINE Alu 5 148 0 2 1493 567 120 0 0 chr12 119143794 119143868 -2113662 + (A)n Simple_repeat Simple_repeat 1 74 0 2 1493 500 268 135 11 chr12 119144034 119144219 -2113311 + ID_B1 SINE B4 3 210 -14 2 1493 793 194 0 11 chr12 119144257 119144439 -2113091 + GA-rich Low_complexity Low_complexity 1 180 0 2 1494 892 309 30 4 chr12 119144858 119145121 -2112409 + B4A SINE B4 1 270 -22 2 1494 305 312 139 5 chr12 119145328 119145537 -2111993 + MER44A DNA MER2_type 24 260 -79 2 1494 254 206 0 14 chr12 119145695 119145769 -2111761 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 1494 239 348 9 18 chr12 119145769 119145883 -2111647 + MER44A DNA MER2_type 222 334 -5 2 1494 1168 252 103 0 chr12 119146108 119146437 -2111093 - ORR1D2 LTR MaLR -7 363 1 2 1494 1149 269 74 6 chr12 119146632 119146968 -2110562 + MTE2b LTR MaLR 21 379 0 2 1494 1970 146 61 14 chr12 119147385 119147745 -2109785 + ORR1B1 LTR MaLR 10 386 -8 2 1494 241 350 0 25 chr12 119148400 119148520 -2109010 + MTEa LTR MaLR 28 144 -240 2 1494 246 194 0 0 chr12 119148551 119148613 -2108917 + CT-rich Low_complexity Low_complexity 1 62 0 2 1494 279 241 24 37 chr12 119148692 119148774 -2108756 + MTEa LTR MaLR 265 345 -34 2 1494 369 271 6 11 chr12 119149202 119149381 -2108149 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1494 380 167 111 0 chr12 119149836 119149908 -2107622 - PB1D9 SINE Alu -40 80 1 2 1494 213 39 0 0 chr12 119150357 119150383 -2107147 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1494 336 350 29 64 chr12 119150495 119150666 -2106864 - RSINE1 SINE B4 0 165 1 2 1494 423 285 192 10 chr12 119150889 119151197 -2106333 + MLT1B LTR MaLR 3 366 -24 2 1494 258 298 57 8 chr12 119151417 119151539 -2105991 - LTR82B Low_complexity ERVL -482 348 221 2 1494 308 64 21 0 chr12 119152580 119152627 -2104903 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1494 1045 162 135 10 chr12 119155963 119156163 -2101367 - URR1A DNA MER1_type 0 226 2 2 1494 547 313 16 32 chr12 119156169 119156354 -2101176 + B3A SINE B2 1 182 -16 2 1494 726 206 0 0 chr12 119156392 119156659 -2100871 + (CA)n Simple_repeat Simple_repeat 1 267 0 2 1494 23 68 0 0 chr12 119156660 119156704 -2100826 + AT_rich Low_complexity Low_complexity 1 44 0 2 1494 237 333 14 0 chr12 119156897 119156966 -2100564 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1494 297 0 0 0 chr12 119157022 119157055 -2100475 + (CAG)n Simple_repeat Simple_repeat 1 33 0 2 1494 2947 115 16 18 chr12 119157055 119157551 -2099979 + RMER6A LTR ERVK 3 497 -259 2 1494 4125 126 81 0 chr12 119157734 119158361 -2099169 + RLTR33 LTR ERVK 1 678 0 2 1494 1287 138 39 4 chr12 119158364 119158596 -2098934 + RMER6A LTR ERVK 486 725 -31 2 1494 245 98 0 24 chr12 119158611 119158653 -2098877 + (TCC)n Simple_repeat Simple_repeat 2 42 0 2 1494 742 177 69 0 chr12 119158668 119158798 -2098732 - B1_Mus1 SINE Alu -9 139 1 2 1494 667 219 68 7 chr12 119158803 119158950 -2098580 - B4A SINE B4 -65 227 72 2 1494 411 262 48 0 chr12 119159953 119160079 -2097451 - L1MA7 LINE L1 -3 6288 6157 2 1494 498 33 0 0 chr12 119160855 119160915 -2096615 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1494 534 256 15 15 chr12 119160937 119161072 -2096458 - B1F2 SINE Alu -14 135 1 2 1494 1075 301 39 51 chr12 119161252 119161427 -2096103 - L1MB3 LINE L1 -116 6067 5892 2 1494 1177 68 0 7 chr12 119161427 119161574 -2095956 - B1_Mus2 SINE Alu -1 146 1 2 1494 1075 306 66 49 chr12 119161574 119162120 -2095410 - L1MB3 LINE L1 -396 5895 5303 2 1494 3642 171 59 41 chr12 119162225 119162329 -2095201 + RLTR25B LTR ERVK 3 115 -913 2 1494 459 0 0 0 chr12 119162329 119162380 -2095150 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1494 3642 171 59 41 chr12 119162380 119163111 -2094419 + RLTR25B LTR ERVK 116 853 -175 2 1494 699 226 107 103 chr12 119163246 119163507 -2094023 + RLTR25B LTR ERVK 762 1023 -5 2 1494 335 206 0 0 chr12 119163577 119163640 -2093890 - HAL1-3A_ME LINE L1 -821 2037 1975 2 1494 243 229 0 0 chr12 119163640 119163701 -2093829 + (TATG)n Simple_repeat Simple_repeat 4 64 0 2 1494 264 200 20 0 chr12 119163743 119163793 -2093737 - ID4 SINE ID -30 53 3 2 1494 558 284 12 30 chr12 119163820 119163987 -2093543 - B4 SINE B4 -3 289 126 2 1494 329 281 96 57 chr12 119164259 119164489 -2093041 - L1M4 LINE L1 -422 5762 5524 2 1494 189 411 13 38 chr12 119165286 119165443 -2092087 + L2 LINE L2 2834 2986 -433 2 1494 446 304 35 0 chr12 119165655 119165770 -2091760 - RSINE1 SINE B4 -32 133 15 2 1494 189 0 0 0 chr12 119166152 119166173 -2091357 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1494 314 183 67 0 chr12 119166177 119166237 -2091293 + B1_Mus1 SINE Alu 12 75 -73 2 1494 556 206 0 0 chr12 119166235 119166342 -2091188 + B1_Mus2 SINE Alu 41 147 0 2 1494 227 303 0 0 chr12 119166460 119166526 -2091004 + MIRb SINE MIR 7 72 -196 2 1494 360 317 7 58 chr12 119167042 119167196 -2090334 + B1F SINE Alu 3 148 -1 2 1494 393 328 32 8 chr12 119167278 119167404 -2090126 + RSINE1 SINE B4 30 158 -7 2 1494 960 221 179 67 chr12 119168949 119169086 -2088444 + RMER5 LTR ERV1 56 203 -331 2 1494 792 164 309 0 chr12 119169086 119169251 -2088279 + B3 SINE B2 1 216 0 2 1494 960 221 179 67 chr12 119169251 119169544 -2087986 + RMER5 LTR ERV1 204 534 0 2 1494 304 320 237 27 chr12 119170210 119170487 -2087043 + L1MCb LINE L1 541 875 -5170 2 1494 2198 143 19 0 chr12 119170595 119170916 -2086614 + ORR1A2 LTR MaLR 1 327 0 2 1494 1860 230 25 33 chr12 119170920 119171442 -2086088 + Lx7 LINE L1 785 1302 -6426 2 1494 234 0 0 0 chr12 119171448 119171474 -2086056 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1494 1669 234 63 30 chr12 119171474 119171905 -2085625 + Lx7 LINE L1 6799 7243 -453 2 1494 444 19 0 0 chr12 119172620 119172673 -2084857 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1494 301 291 25 0 chr12 119173164 119173243 -2084287 - ID4_ SINE ID -1 82 2 2 1494 272 271 124 19 chr12 119173254 119173363 -2084167 - PB1 SINE Alu -2 125 4 2 1494 2360 163 27 78 chr12 119175261 119175784 -2081746 + RLTR31A_Mm LTR ERVK 1 692 0 2 1494 529 333 68 42 chr12 119176286 119176477 -2081053 + B4A SINE B4 97 292 0 2 1494 293 210 90 44 chr12 119177318 119177432 -2080098 - MIR SINE MIR -145 123 5 2 1494 29 78 0 0 chr12 119177665 119177729 -2079801 + AT_rich Low_complexity Low_complexity 1 64 0 3 1494 2659 259 29 29 chr12 119178198 119178953 -2078577 + Lx9 LINE L1 6721 7475 -169 3 1494 28 0 0 0 chr12 119179297 119179325 -2078205 + AT_rich Low_complexity Low_complexity 1 28 0 3 1494 2106 134 132 16 chr12 119179519 119179890 -2077640 + MTC LTR MaLR 1 414 -7 3 1494 540 204 0 0 chr12 119179920 119180018 -2077512 - B1_Mur2 SINE Alu 0 149 52 3 1494 240 111 0 0 chr12 119180975 119181011 -2076519 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1494 709 141 263 0 chr12 119181088 119181244 -2076286 + URR1A DNA MER1_type 5 201 -25 3 1494 305 258 132 66 chr12 119181125 119181291 -2076239 - CYRA11_Mm Unknown Y-chromosome -300 317 141 3 1494 22 35 0 0 chr12 119181876 119181905 -2075625 + AT_rich Low_complexity Low_complexity 1 29 0 3 1494 256 24 0 47 chr12 119182492 119182535 -2074995 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1494 1777 21 0 5 chr12 119182794 119182986 -2074544 + B2_Mm1t SINE B2 1 191 -2 3 1494 188 214 18 0 chr12 119183683 119183739 -2073791 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1494 923 258 145 0 chr12 119183750 119183998 -2073532 - B4A SINE B4 -2 290 7 3 1494 363 121 0 0 chr12 119184145 119184203 -2073327 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1494 296 277 72 0 chr12 119184338 119184421 -2073109 + BC1_Mm scRNA scRNA 15 103 -49 3 1494 432 184 13 0 chr12 119184722 119184798 -2072732 - B3 SINE B2 -110 106 30 3 1494 21 0 0 0 chr12 119186252 119186273 -2071257 + AT_rich Low_complexity Low_complexity 1 21 0 3 1494 374 204 0 10 chr12 119186360 119186459 -2071071 + G-rich Low_complexity Low_complexity 4 101 0 3 1494 480 280 62 7 chr12 119186512 119186656 -2070874 + RSINE1 SINE B4 2 153 -12 3 1494 391 317 29 23 chr12 119186797 119186936 -2070594 + ID_B1 SINE B4 81 215 -9 3 1494 534 270 80 39 chr12 119186933 119187113 -2070417 + B3 SINE B2 11 186 -9 3 1494 1147 85 0 0 chr12 119187585 119187726 -2069804 - B1_Mm SINE Alu -6 141 1 3 1494 339 65 0 0 chr12 119187794 119187840 -2069690 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1494 369 0 0 0 chr12 119187840 119187880 -2069650 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1494 270 312 109 96 chr12 119187914 119188367 -2069163 + L2b LINE L2 2870 3343 -32 3 1494 603 221 9 0 chr12 119188531 119188644 -2068886 - B3A SINE B2 -82 116 3 3 1494 1086 122 6 18 chr12 119188705 119188847 -2068683 + B2_Mm2 SINE B2 1 140 -55 3 1494 348 64 0 0 chr12 119188847 119188894 -2068636 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 3 1494 1086 122 6 18 chr12 119188894 119188918 -2068612 + B2_Mm2 SINE B2 141 165 -30 3 1494 724 277 0 19 chr12 119188970 119189132 -2068398 - RSINE1 SINE B4 -3 162 4 3 1494 327 319 188 37 chr12 119189909 119190127 -2067403 - B4 SINE B4 -2 290 40 3 1494 405 0 0 0 chr12 119190430 119190475 -2067055 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1494 447 19 0 0 chr12 119191379 119191431 -2066099 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1494 928 97 9 170 chr12 119191463 119191675 -2065855 + B2_Mm2 SINE B2 5 182 -13 3 1494 324 0 0 0 chr12 119191897 119191933 -2065597 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1494 288 0 0 0 chr12 119191933 119191964 -2065566 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1494 743 155 4 0 chr12 119191965 119192230 -2065300 + (TG)n Simple_repeat Simple_repeat 1 266 0 3 1494 441 248 312 56 chr12 119192239 119192470 -2065060 - B4A SINE B4 -1 291 2 3 1494 1097 281 107 19 chr12 119194623 119195164 -2062366 - L1MB3 LINE L1 0 6183 5595 3 1494 465 315 202 55 chr12 119195761 119196662 -2060868 - L2 LINE L2 -339 3080 2048 3 1494 35 41 0 0 chr12 119197160 119197209 -2060321 + AT_rich Low_complexity Low_complexity 1 49 0 3 1494 180 0 0 0 chr12 119198114 119198134 -2059396 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1494 231 36 0 0 chr12 119200221 119200249 -2057281 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1494 552 126 0 0 chr12 119201804 119201891 -2055639 + (TC)n Simple_repeat Simple_repeat 1 87 0 3 1494 1522 283 33 33 chr12 119202065 119202522 -2055008 + Lx8 LINE L1 6953 7409 -64 3 1494 350 295 33 0 chr12 119202667 119202789 -2054741 - L1MB7 LINE L1 -10 6174 6049 3 1494 945 271 32 30 chr12 119203021 119203359 -2054171 - L1MB7 LINE L1 -519 5665 5327 3 1494 25 31 0 0 chr12 119203881 119203913 -2053617 + AT_rich Low_complexity Low_complexity 1 32 0 3 1494 289 300 12 12 chr12 119204092 119204173 -2053357 + CT-rich Low_complexity Low_complexity 5 85 0 3 1494 357 238 11 55 chr12 119204178 119204209 -2053321 + C-rich Low_complexity Low_complexity 147 178 0 3 1494 934 61 0 62 chr12 119204209 119204401 -2053129 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1494 357 238 11 55 chr12 119204401 119204551 -2052979 + C-rich Low_complexity Low_complexity 5 146 0 3 1494 450 53 0 0 chr12 119204630 119204687 -2052843 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1494 478 322 33 7 chr12 119204703 119204856 -2052674 - ID_B1 SINE B4 0 224 68 3 1494 355 310 26 34 chr12 119205491 119205608 -2051922 - PB1D10 SINE Alu -1 116 1 3 1494 779 228 18 131 chr12 119206184 119206406 -2051124 - B3A SINE B2 -1 197 1 3 1494 724 200 0 0 chr12 119206413 119206528 -2051002 - B1_Mur2 SINE Alu -6 143 29 3 1494 446 275 42 28 chr12 119206829 119206971 -2050559 - MER5A DNA MER1_type -44 145 2 3 1494 440 302 132 48 chr12 119207041 119207281 -2050249 + B4A SINE B4 3 285 -7 3 1494 791 66 39 13 chr12 119207346 119207500 -2050030 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 3 1494 324 120 0 0 chr12 119208248 119208298 -2049232 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 3 1494 205 234 122 122 chr12 119210457 119210564 -2046966 - MIRc SINE MIR -152 116 10 3 1494 1920 279 81 24 chr12 119212301 119212670 -2044860 + Lx8 LINE L1 6532 6914 -559 3 1494 1689 42 5 0 chr12 119212670 119212861 -2044669 + B2_Mm1t SINE B2 2 193 0 3 1494 1920 279 81 24 chr12 119212861 119213195 -2044335 + Lx8 LINE L1 6915 7275 -198 3 1494 474 101 0 0 chr12 119215566 119215635 -2041895 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1494 23 0 0 0 chr12 119216356 119216379 -2041151 + AT_rich Low_complexity Low_complexity 1 23 0 3 1494 838 300 86 0 chr12 119217495 119217752 -2039778 + B4 SINE B4 2 280 -12 3 1494 207 0 0 0 chr12 119217814 119217837 -2039693 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1494 919 202 122 5 chr12 119219259 119219448 -2038082 + ID_B1 SINE B4 5 215 -9 3 1494 553 286 50 74 chr12 119219481 119219764 -2037766 + MLT1B LTR MaLR 78 353 -37 3 1494 311 44 22 0 chr12 119219883 119219928 -2037602 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1494 23 54 0 0 chr12 119219995 119220032 -2037498 + AT_rich Low_complexity Low_complexity 1 37 0 3 1494 633 110 0 18 chr12 119223477 119223588 -2033942 + L1_Mur2 LINE L1 5247 5355 -522 3 1494 2104 222 27 0 chr12 119224115 119224521 -2033009 - Lx9 LINE L1 -719 6925 6509 3 1494 1343 228 118 13 chr12 119224528 119224901 -2032629 + Lx9 LINE L1 6932 7343 -301 3 1494 659 211 126 5 chr12 119224916 119225130 -2032400 + Lx9 LINE L1 7399 7638 -6 3 1494 190 0 32 32 chr12 119225144 119225175 -2032355 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1494 453 81 0 0 chr12 119226355 119226417 -2031113 + (GGGGA)n Simple_repeat Simple_repeat 5 66 0 3 1494 196 183 0 64 chr12 119226654 119226794 -2030736 + C-rich Low_complexity Low_complexity 4 134 0 3 1494 366 120 40 0 chr12 119229405 119229480 -2028050 + (TCCA)n Simple_repeat Simple_repeat 1 78 0 3 1494 513 261 181 13 chr12 119229504 119229694 -2027836 - B4A SINE B4 -15 277 58 3 1494 288 0 0 0 chr12 119229694 119229726 -2027804 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1494 513 261 181 13 chr12 119229726 119229772 -2027758 - B4A SINE B4 -235 57 3 3 1494 207 0 0 0 chr12 119229968 119229991 -2027539 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1494 288 0 0 0 chr12 119230840 119230872 -2026658 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1494 661 85 19 0 chr12 119232594 119232700 -2024830 + (TTTTC)n Simple_repeat Simple_repeat 4 111 0 3 1494 597 307 54 73 chr12 119234367 119234683 -2022847 - MER2 DNA MER2_type -10 335 26 3 1494 375 295 178 4 chr12 119235326 119235568 -2021962 - L1MB1 LINE L1 -103 6065 5782 3 1494 279 280 21 21 chr12 119236541 119236636 -2020894 - B3 SINE B2 -121 95 1 3 1494 247 310 136 23 chr12 119236638 119236770 -2020760 - B1_Mur2 SINE Alu 0 149 3 3 1494 24 0 0 0 chr12 119237523 119237547 -2019983 + AT_rich Low_complexity Low_complexity 1 24 0 3 1494 554 266 14 61 chr12 119237577 119237725 -2019805 - RSINE1 SINE B4 0 165 25 3 1494 525 32 0 0 chr12 119239122 119239185 -2018345 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1494 261 0 0 0 chr12 119239185 119239213 -2018317 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1494 560 311 49 67 chr12 119239263 119239487 -2018043 - B4 SINE B4 -72 220 1 3 1494 885 243 12 21 chr12 119239971 119240184 -2017346 + B4 SINE B4 33 246 -46 3 1494 438 69 0 0 chr12 119240184 119240242 -2017288 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1494 285 51 0 0 chr12 119240382 119240421 -2017109 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1494 932 275 47 74 chr12 119240827 119241192 -2016338 + ORR1E LTR MaLR 5 359 0 3 1494 27 62 0 0 chr12 119241958 119242006 -2015524 + AT_rich Low_complexity Low_complexity 1 48 0 3 1494 337 243 35 97 chr12 119243461 119243575 -2013955 + B1F1 SINE Alu 11 117 -32 3 1494 457 255 101 55 chr12 119243583 119243782 -2013748 + B4 SINE B4 81 288 -4 3 1494 22 56 0 0 chr12 119243899 119243935 -2013595 + AT_rich Low_complexity Low_complexity 1 36 0 3 1494 370 245 122 0 chr12 119244578 119244676 -2012854 + Tigger5 DNA MER2_type 2289 2398 -8 3 1494 1282 150 23 0 chr12 119245080 119245300 -2012230 - URR1A DNA MER1_type 0 226 2 3 1494 317 268 72 0 chr12 119245329 119245426 -2012104 + B1F1 SINE Alu 6 109 -40 4 1494 780 172 6 12 chr12 119245496 119245667 -2011863 + GA-rich Low_complexity Low_complexity 3 172 0 4 1494 369 0 0 0 chr12 119245974 119246015 -2011515 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1494 404 331 72 21 chr12 119248156 119248350 -2009180 + MER2 DNA MER2_type 26 229 -116 4 1494 207 0 0 0 chr12 119248866 119248889 -2008641 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1494 820 244 6 0 chr12 119251541 119251717 -2005813 - B3 SINE B2 -38 178 2 4 1494 873 256 29 0 chr12 119251747 119251954 -2005576 - B3 SINE B2 -3 213 1 4 1494 371 235 156 22 chr12 119253142 119253277 -2004253 + RSINE1 SINE B4 12 164 -1 4 1494 400 326 74 13 chr12 119253407 119253556 -2003974 + MLT1A1 LTR MaLR 241 398 -10 4 1494 1500 279 112 39 chr12 119254558 119255422 -2002108 + L1MB3 LINE L1 5256 6182 -1 4 1494 849 260 106 28 chr12 119255440 119255760 -2001770 + L1MC2 LINE L1 5962 6306 -38 4 1494 485 246 20 66 chr12 119255859 119256011 -2001519 - B1F1 SINE Alu -3 146 2 4 1494 897 259 114 0 chr12 119256696 119256951 -2000579 + B4A SINE B4 1 284 -8 4 1494 456 183 0 0 chr12 119256956 119257049 -2000481 + (CA)n Simple_repeat Simple_repeat 2 94 0 4 1494 315 184 0 0 chr12 119257928 119258015 -1999515 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 1494 372 297 0 0 chr12 119258062 119258153 -1999377 + RSINE1 SINE B4 47 137 -28 4 1494 391 248 114 0 chr12 119258420 119258525 -1999005 + PB1D10 SINE Alu 1 117 0 4 1494 21 0 0 0 chr12 119259396 119259417 -1998113 + AT_rich Low_complexity Low_complexity 1 21 0 4 1494 203 217 16 48 chr12 119259498 119259561 -1997969 + MIR3 SINE MIR 1 61 -147 4 1494 411 21 0 0 chr12 119259611 119259659 -1997871 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1494 474 103 23 11 chr12 119259659 119259747 -1997783 + (GA)n Simple_repeat Simple_repeat 1 89 0 4 1494 303 212 0 0 chr12 119259905 119259990 -1997540 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1494 649 303 125 4 chr12 119260791 119261023 -1996507 + B4A SINE B4 6 265 -27 4 1494 211 202 12 12 chr12 119261053 119261133 -1996397 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1494 234 0 0 0 chr12 119261601 119261627 -1995903 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1494 345 82 0 0 chr12 119261793 119261842 -1995688 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1494 420 134 10 20 chr12 119261845 119261944 -1995586 + (TA)n Simple_repeat Simple_repeat 1 98 0 4 1494 1160 74 0 0 chr12 119262995 119263143 -1994387 + B1_Mus1 SINE Alu 1 148 0 4 1494 299 133 0 0 chr12 119263804 119263849 -1993681 - B3 SINE B2 -171 45 1 4 1494 25 95 0 0 chr12 119266234 119266308 -1991222 + AT_rich Low_complexity Low_complexity 1 74 0 4 1494 297 0 0 0 chr12 119266335 119266368 -1991162 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1494 407 211 18 0 chr12 119267839 119267948 -1989582 + (TATG)n Simple_repeat Simple_repeat 2 112 0 4 1494 180 0 0 0 chr12 119267961 119267981 -1989549 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 4 1494 349 347 85 24 chr12 119267982 119268230 -1989300 + ORR1E LTR MaLR 95 357 -2 4 1494 450 318 52 7 chr12 119268491 119268646 -1988884 - RSINE1 SINE B4 -2 163 2 4 1494 536 264 8 8 chr12 119270011 119270133 -1987397 - RSINE1 SINE B4 -42 123 2 4 1494 204 339 55 24 chr12 119270182 119270309 -1987221 + MIR SINE MIR 20 150 -112 4 1494 258 331 104 46 chr12 119271160 119271467 -1986063 + L1MC4 LINE L1 6731 7055 -987 4 1494 415 320 67 56 chr12 119273385 119273742 -1983788 - LTR33 LTR ERVL -131 384 24 4 1494 21 0 0 0 chr12 119274114 119274135 -1983395 + AT_rich Low_complexity Low_complexity 1 21 0 4 1494 407 328 45 33 chr12 119274332 119274575 -1982955 + L1M4 LINE L1 5525 5770 -404 4 186 7700 48 15 0 chr12 119275297 119276217 -1981313 + L1_Mus1 LINE L1 5631 6564 -3 4 1495 1119 101 71 12 chr12 119276791 119276961 -1980569 - B2_Mm2 SINE B2 -14 181 2 4 1495 552 215 50 43 chr12 119278536 119278677 -1978853 - B1F SINE Alu -1 148 7 4 1495 494 44 0 29 chr12 119279320 119279390 -1978140 + (GGGAGA)n Simple_repeat Simple_repeat 5 72 0 4 1495 180 0 0 0 chr12 119279388 119279408 -1978122 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 4 1495 284 256 107 33 chr12 119279927 119280048 -1977482 - MER5A DNA MER1_type -26 163 34 4 1495 423 0 0 0 chr12 119281392 119281439 -1976091 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1495 414 185 0 0 chr12 119281440 119281521 -1976009 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1495 387 149 34 56 chr12 119281540 119281778 -1975752 + (GTGTG)n Simple_repeat Simple_repeat 1 232 0 4 1495 311 159 57 34 chr12 119281778 119281954 -1975576 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1495 261 281 6 24 chr12 119282486 119282650 -1974880 + (CAT)n Simple_repeat Simple_repeat 3 163 0 4 1495 666 233 0 0 chr12 119282664 119282844 -1974686 + (CAT)n Simple_repeat Simple_repeat 1 180 0 4 1495 183 205 0 0 chr12 119282859 119282898 -1974632 + (CAT)n Simple_repeat Simple_repeat 1 39 0 4 1495 394 325 6 12 chr12 119282908 119283070 -1974460 + HAL1-2a_MD LINE L1 2345 2505 -519 4 1495 215 246 18 0 chr12 119283077 119283134 -1974396 + (CAT)n Simple_repeat Simple_repeat 2 59 0 4 1495 320 298 224 45 chr12 119283145 119283391 -1974139 - B4A SINE B4 -2 290 1 4 1495 306 0 0 0 chr12 119284408 119284442 -1973088 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1495 616 259 15 0 chr12 119284446 119284577 -1972953 - B3A SINE B2 -65 133 1 4 1495 210 313 103 17 chr12 119286307 119286424 -1971106 + L2b LINE L2 3249 3375 0 4 1495 661 175 117 0 chr12 119286445 119286565 -1970965 - B1_Mur2 SINE Alu -15 134 1 4 1495 215 286 139 26 chr12 119286654 119286805 -1970725 + MIRc SINE MIR 83 250 -18 4 1495 278 244 111 0 chr12 119287735 119287816 -1969714 + B1F SINE Alu 25 115 -12 4 1495 318 50 0 0 chr12 119287816 119287856 -1969674 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1495 624 251 83 6 chr12 119289938 119290106 -1967424 + B3 SINE B2 36 216 0 4 1495 258 261 0 30 chr12 119290898 119290965 -1966565 - tRNA-Ala-GCY_ tRNA tRNA -8 67 3 4 1495 205 331 89 24 chr12 119290980 119291104 -1966426 - MIRb SINE MIR -10 258 127 4 1495 26 64 0 0 chr12 119291577 119291624 -1965906 + AT_rich Low_complexity Low_complexity 1 47 0 4 1495 618 290 132 35 chr12 119291879 119292362 -1965168 + L1ME1 LINE L1 3355 3884 -2262 4 1495 1233 61 7 0 chr12 119292471 119292618 -1964912 + B1_Mus1 SINE Alu 1 148 0 4 1495 318 115 0 0 chr12 119292618 119292679 -1964851 + (A)n Simple_repeat Simple_repeat 1 61 0 4 1495 256 278 21 75 chr12 119292695 119292873 -1964657 + L1ME1 LINE L1 5106 5275 -871 4 1495 375 23 0 0 chr12 119292873 119292917 -1964613 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1495 657 321 63 25 chr12 119292938 119293459 -1964071 + L1ME1 LINE L1 5368 5890 -289 4 1495 534 289 57 0 chr12 119293497 119293691 -1963839 - RCHARR1 DNA MER1_type -29 945 741 4 1495 402 254 121 78 chr12 119293714 119293855 -1963675 - B4 SINE B4 -4 288 142 4 1495 1077 254 198 11 chr12 119293890 119294249 -1963281 - RCHARR1 DNA MER1_type -546 428 3 4 1495 1038 256 100 11 chr12 119294613 119294874 -1962656 + B4A SINE B4 3 286 -6 4 1495 350 275 110 32 chr12 119296187 119296341 -1961189 + MIRb SINE MIR 95 260 -8 4 1495 225 83 0 0 chr12 119298152 119298188 -1959342 + (CAAG)n Simple_repeat Simple_repeat 1 36 0 4 1495 234 275 14 14 chr12 119298643 119298713 -1958817 + MER46C DNA MER2_type 268 337 -1 4 1495 1097 70 28 7 chr12 119300180 119300323 -1957207 + B1_Mus2 SINE Alu 2 147 0 4 1495 205 208 0 40 chr12 119300752 119300802 -1956728 + CT-rich Low_complexity Low_complexity 3 50 0 4 1495 254 234 15 15 chr12 119301550 119301615 -1955915 + MER46C DNA MER2_type 263 327 -11 4 1495 23 0 0 0 chr12 119303075 119303098 -1954432 + AT_rich Low_complexity Low_complexity 1 23 0 4 1495 23 33 0 0 chr12 119303136 119303166 -1954364 + AT_rich Low_complexity Low_complexity 1 30 0 4 1495 447 19 0 0 chr12 119303383 119303435 -1954095 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1495 813 302 46 11 chr12 119303447 119303728 -1953802 - B4A SINE B4 0 292 2 4 1495 189 0 0 0 chr12 119303953 119303974 -1953556 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1495 202 282 0 0 chr12 119304012 119304083 -1953447 + T-rich Low_complexity Low_complexity 1 71 0 4 1495 229 204 19 0 chr12 119304135 119304189 -1953341 + C-rich Low_complexity Low_complexity 2 56 0 4 1495 1112 244 30 79 chr12 119304193 119304367 -1953163 + ORR1D1 LTR MaLR 24 199 -175 4 1495 609 49 0 0 chr12 119304367 119304448 -1953082 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 4 1495 1112 244 30 79 chr12 119304448 119304642 -1952888 + ORR1D1 LTR MaLR 200 374 0 4 1495 287 214 29 39 chr12 119304748 119304850 -1952680 + T-rich Low_complexity Low_complexity 3 103 0 4 1495 409 141 0 23 chr12 119305221 119305308 -1952222 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1495 434 232 29 35 chr12 119305316 119305486 -1952044 + (TATG)n Simple_repeat Simple_repeat 2 170 0 4 1495 445 209 13 19 chr12 119305501 119305657 -1951873 + (TATG)n Simple_repeat Simple_repeat 4 158 0 4 1495 320 257 6 68 chr12 119305678 119305798 -1951732 + (TG)n Simple_repeat Simple_repeat 2 113 0 4 1495 401 81 16 0 chr12 119305798 119305860 -1951670 + (TATG)n Simple_repeat Simple_repeat 4 66 0 4 1495 320 257 6 68 chr12 119305860 119305902 -1951628 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1495 664 261 101 31 chr12 119305926 119306183 -1951347 - B4 SINE B4 -17 275 1 4 1495 190 339 114 23 chr12 119306697 119306872 -1950658 - MIRc SINE MIR -17 251 61 4 1495 441 0 0 0 chr12 119307288 119307337 -1950193 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1495 356 255 63 9 chr12 119308241 119308352 -1949178 + B1F SINE Alu 3 119 -30 4 1495 294 279 98 30 chr12 119308352 119308373 -1949157 + ID_B1 SINE B4 84 224 0 4 1495 312 325 0 0 chr12 119308376 119308453 -1949077 + ID4_ SINE ID 7 83 0 4 1495 274 283 113 36 chr12 119308592 119308786 -1948744 - L1MA9 LINE L1 -11 6280 6072 4 1495 713 298 46 16 chr12 119308836 119309143 -1948387 - L1MA9 LINE L1 -346 5966 5651 4 1495 963 291 69 93 chr12 119309150 119310090 -1947440 + L1M3 LINE L1 4422 5342 -801 5 1495 186 263 71 31 chr12 119310312 119310410 -1947120 + L2a LINE L2 3307 3408 -18 5 1495 444 82 0 0 chr12 119310470 119310531 -1946999 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1495 183 237 101 111 chr12 119311425 119311624 -1945906 + L2c LINE L2 3174 3370 -17 5 1495 254 341 37 0 chr12 119311812 119311894 -1945636 - L2b LINE L2 -188 3187 3103 5 1495 251 295 0 0 chr12 119311997 119312058 -1945472 + Lx8 LINE L1 7057 7117 -356 5 1495 232 305 0 0 chr12 119312167 119312226 -1945304 + Lx8 LINE L1 7059 7117 -356 5 1495 696 242 218 43 chr12 119312328 119312603 -1944927 + Lx8 LINE L1 7057 7387 -86 5 1495 3096 54 43 0 chr12 119312603 119312975 -1944555 + RLTR10 LTR ERVK 1 388 -2 5 1495 696 242 218 43 chr12 119312975 119313048 -1944482 + Lx8 LINE L1 7388 7466 -7 5 1495 246 297 15 15 chr12 119313220 119313285 -1944245 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 5 1495 584 268 231 0 chr12 119313609 119313852 -1943678 + RMER15 LTR ERVL 277 575 0 5 1495 550 326 51 41 chr12 119313879 119314387 -1943143 + L1M5 LINE L1 4032 4544 -1602 5 1495 1161 91 0 0 chr12 119314391 119314534 -1942996 + B1_Mus1 SINE Alu 5 147 -1 5 1495 208 26 49 49 chr12 119314537 119314578 -1942952 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1495 237 241 79 21 chr12 119314699 119314839 -1942691 + L1MC LINE L1 4672 4819 -1327 5 1495 204 111 0 0 chr12 119314861 119314897 -1942633 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1495 285 348 39 31 chr12 119315015 119315270 -1942260 + L1M5 LINE L1 5058 5314 -832 5 1495 473 267 126 20 chr12 119315522 119315721 -1941809 + L1M5 LINE L1 5599 5818 -346 5 1495 246 195 11 22 chr12 119316105 119316194 -1941336 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1495 2232 155 12 48 chr12 119316234 119316634 -1940896 + ORR1B1 LTR MaLR 1 386 -8 5 1495 660 240 101 87 chr12 119316904 119317191 -1940339 - B4A SINE B4 0 292 2 5 1495 273 195 65 109 chr12 119317571 119317663 -1939867 + RSINE1 SINE B4 76 163 -2 5 1495 752 153 7 0 chr12 119318133 119318270 -1939260 + G-rich Low_complexity Low_complexity 4 141 0 5 1495 261 0 0 0 chr12 119318761 119318790 -1938740 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1495 706 254 90 111 chr12 119319015 119319294 -1938236 + B4 SINE B4 8 280 -12 5 1495 1258 294 96 4 chr12 119319448 119319916 -1937614 + L1MA8 LINE L1 5517 6027 -264 5 1495 268 210 122 12 chr12 119320028 119320110 -1937420 + L1MA8 LINE L1 6196 6286 -5 5 1495 198 0 0 0 chr12 119322463 119322485 -1935045 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1495 2191 181 45 12 chr12 119323180 119323582 -1933948 + MTD LTR MaLR 5 419 0 5 1495 318 252 173 35 chr12 119325755 119325982 -1931548 + L1MB5 LINE L1 5564 5828 -361 5 1495 340 317 58 0 chr12 119326005 119326109 -1931421 + PB1D9 SINE Alu 7 116 -4 5 1495 400 274 0 0 chr12 119326112 119326196 -1931334 + BC1_Mm scRNA scRNA 8 91 -61 5 1495 513 331 25 43 chr12 119326196 119326521 -1931009 + L1MB5 LINE L1 5846 6164 -10 5 1495 9958 64 3 2 chr12 119326520 119327774 -1929756 + L1Md_F2 LINE L1 4331 5586 -297 5 1495 7981 73 5 26 chr12 119327774 119328791 -1928739 + L1Md_F2 LINE L1 5587 6582 0 5 1495 285 146 0 0 chr12 119328819 119328867 -1928663 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1495 334 294 16 16 chr12 119329848 119329969 -1927561 - Tigger6a DNA MER2_type -12 1071 951 5 1495 1864 230 71 10 chr12 119329969 119330378 -1927152 + Lx5 LINE L1 6617 7050 0 5 1495 931 326 120 96 chr12 119330379 119331295 -1926235 - Tigger6a DNA MER2_type -126 957 20 5 1495 24 0 0 0 chr12 119332015 119332039 -1925491 + AT_rich Low_complexity Low_complexity 1 24 0 5 1495 304 170 47 0 chr12 119332225 119332331 -1925199 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1495 710 306 165 22 chr12 119332352 119332807 -1924723 + Lx8 LINE L1 6952 7471 -2 5 1495 239 274 0 16 chr12 119333209 119333272 -1924258 + A-rich Low_complexity Low_complexity 5 66 0 5 1495 201 74 0 0 chr12 119333344 119333371 -1924159 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1495 614 261 86 24 chr12 119334040 119334354 -1923176 - L1MEc LINE L1 -4515 1885 1587 5 1495 467 226 6 23 chr12 119334463 119334635 -1922895 + CT-rich Low_complexity Low_complexity 4 172 0 5 1495 489 252 34 17 chr12 119334643 119334760 -1922770 - B1F SINE Alu -7 142 24 5 1495 307 287 103 9 chr12 119334914 119335030 -1922500 - L1MEc LINE L1 -5777 623 497 5 1495 242 280 0 0 chr12 119335269 119335319 -1922211 - L1MEc LINE L1 -6305 95 46 5 1495 191 247 140 30 chr12 119335376 119335476 -1922054 + MIRc SINE MIR 70 180 -88 5 1495 546 108 0 0 chr12 119335479 119335562 -1921968 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1495 360 210 0 0 chr12 119335564 119335645 -1921885 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 1495 237 306 13 89 chr12 119336144 119336302 -1921228 - L1MEg LINE L1 -5877 207 62 5 1495 554 287 137 4 chr12 119337209 119337471 -1920059 - Charlie5 DNA MER1_type -84 2540 2244 5 1495 259 253 100 12 chr12 119337476 119337556 -1919974 - Charlie5 DNA MER1_type -2512 112 26 5 1495 269 100 20 0 chr12 119337574 119337624 -1919906 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 5 1495 32 26 0 0 chr12 119337900 119337939 -1919591 + AT_rich Low_complexity Low_complexity 1 39 0 5 1495 1116 306 97 13 chr12 119338869 119339323 -1918207 + Lx8 LINE L1 6953 7444 -29 5 1495 421 282 25 8 chr12 119340004 119340122 -1917408 + B4 SINE B4 4 123 -169 5 1495 1954 56 4 0 chr12 119340338 119340570 -1916960 - L1_Mus1 LINE L1 -4 6563 6331 5 1495 2668 39 3 0 chr12 119340570 119340880 -1916650 + L1_Mus1 LINE L1 6067 6377 -190 5 1495 867 250 17 0 chr12 119341212 119341388 -1916142 + B3A SINE B2 2 180 -18 5 1495 582 54 0 0 chr12 119341423 119341497 -1916033 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 5 1495 241 239 22 0 chr12 119341658 119341704 -1915826 + tRNA-Ala-GCY_ tRNA tRNA 22 68 -7 5 1495 271 178 22 0 chr12 119341664 119341709 -1915821 + ID4_ SINE ID 34 79 -4 5 1495 325 275 25 0 chr12 119343925 119344005 -1913525 + B1F SINE Alu 4 85 -64 5 1495 360 0 0 0 chr12 119344110 119344150 -1913380 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1495 997 211 36 63 chr12 119345345 119345598 -1911932 + B4A SINE B4 1 246 -46 5 1495 827 115 49 0 chr12 119345598 119345840 -1911690 + GA-rich Low_complexity Low_complexity 1 253 0 5 1495 213 108 0 0 chr12 119345942 119345979 -1911551 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1495 228 254 218 55 chr12 119347200 119347316 -1910214 + L2b LINE L2 3253 3423 -3 5 1495 22 35 0 0 chr12 119347350 119347379 -1910151 + AT_rich Low_complexity Low_complexity 1 29 0 5 1495 29 47 0 0 chr12 119347603 119347646 -1909884 + AT_rich Low_complexity Low_complexity 1 43 0 5 1495 229 293 46 10 chr12 119347969 119348061 -1909469 + MIR SINE MIR 90 189 -87 5 1495 1455 179 5 0 chr12 119349784 119350008 -1907522 + URR1B DNA MER1_type 1 225 0 5 1495 180 0 0 0 chr12 119350571 119350591 -1906939 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 5 1495 24 0 0 0 chr12 119351454 119351478 -1906052 + AT_rich Low_complexity Low_complexity 1 24 0 5 1495 23 0 0 0 chr12 119351738 119351761 -1905769 + AT_rich Low_complexity Low_complexity 1 23 0 5 1495 477 0 0 0 chr12 119352641 119352694 -1904836 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1495 265 140 17 17 chr12 119352824 119352882 -1904648 + GA-rich Low_complexity Low_complexity 3 60 0 5 1495 484 260 0 0 chr12 119352897 119352993 -1904537 + PB1D7 SINE Alu 9 104 -16 5 1495 648 0 0 0 chr12 119352993 119353065 -1904465 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 5 1495 3396 40 2 0 chr12 119353304 119353700 -1903830 + L1Md_F2 LINE L1 6073 6469 -113 5 1495 244 234 0 0 chr12 119354146 119354193 -1903337 - L1MDa LINE L1 -4958 1675 1629 5 1495 3092 24 3 0 chr12 119355291 119355622 -1901908 + IAPEY3_LTR LTR ERVK 1 332 0 5 1495 549 0 0 0 chr12 119355708 119355769 -1901761 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 5 1495 5332 56 0 2 chr12 119356463 119357088 -1900442 + L1Md_F2 LINE L1 5958 6581 -1 5 1495 1298 64 0 23 chr12 119357225 119357401 -1900129 - L1_Mus2 LINE L1 0 6566 6395 5 1495 720 167 0 0 chr12 119357834 119358002 -1899528 + (TG)n Simple_repeat Simple_repeat 1 168 0 5 1495 858 140 0 0 chr12 119358015 119358194 -1899336 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1495 663 185 0 0 chr12 119358205 119358533 -1898997 + (TG)n Simple_repeat Simple_repeat 1 328 0 5 1495 392 281 69 41 chr12 119358624 119358769 -1898761 - B1F1 SINE Alu 0 149 1 5 1495 765 254 152 40 chr12 119359524 119359774 -1897756 + B4A SINE B4 1 278 -14 5 1495 309 188 0 59 chr12 119359814 119359916 -1897614 + (CATA)n Simple_repeat Simple_repeat 3 98 0 5 1495 23 54 0 0 chr12 119359974 119360011 -1897519 + AT_rich Low_complexity Low_complexity 1 37 0 5 1495 1187 95 0 0 chr12 119360017 119360164 -1897366 + B1_Mus2 SINE Alu 1 147 0 5 1495 252 106 0 0 chr12 119360164 119360205 -1897325 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1495 32 0 0 0 chr12 119360443 119360475 -1897055 + AT_rich Low_complexity Low_complexity 1 32 0 5 1495 476 277 0 54 chr12 119360960 119361109 -1896421 + ID_B1 SINE B4 84 224 0 5 1495 522 0 0 0 chr12 119361769 119361827 -1895703 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 5 1495 432 287 115 0 chr12 119362110 119362232 -1895298 + RSINE1 SINE B4 4 139 -26 5 1495 888 286 136 16 chr12 119362517 119362900 -1894630 + L1MB5 LINE L1 5569 5997 -177 5 1495 213 184 0 39 chr12 119363067 119363118 -1894412 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 5 1495 491 306 107 52 chr12 119363226 119363498 -1894032 + B4A SINE B4 4 290 -2 5 1495 465 256 104 74 chr12 119364547 119364783 -1892747 - L1MB7 LINE L1 -295 6064 5827 5 1495 816 292 107 19 chr12 119364885 119364999 -1892531 - B4 SINE B4 -6 286 158 5 1495 198 71 0 0 chr12 119364999 119365027 -1892503 + (GCTG)n Simple_repeat Simple_repeat 3 30 0 5 1495 816 292 107 19 chr12 119365027 119365174 -1892356 - B4 SINE B4 -135 157 3 5 1495 184 323 90 90 chr12 119366847 119367024 -1890506 - MIR3 SINE MIR -23 185 9 5 1495 232 323 88 8 chr12 119367113 119367238 -1890292 + L2 LINE L2 1918 2052 -1367 5 1495 279 0 0 0 chr12 119367413 119367444 -1890086 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 5 1495 187 232 188 0 chr12 119367624 119367693 -1889837 + L2 LINE L2 2581 2662 -757 5 1495 330 26 0 0 chr12 119368562 119368601 -1888929 + (CATA)n Simple_repeat Simple_repeat 2 40 0 5 1495 906 216 10 9 chr12 119368604 119368779 -1888751 - B3 SINE B2 -28 167 1 5 1495 258 0 0 68 chr12 119368798 119368842 -1888688 - B1_Mur4 SINE Alu 0 150 110 6 1495 256 308 38 13 chr12 119369900 119369979 -1887551 + RSINE1 SINE B4 3 83 -82 6 1495 288 0 0 0 chr12 119369981 119370013 -1887517 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1495 38918 29 0 0 chr12 119370562 119376804 -1880726 - L1Md_T LINE L1 0 6585 278 6 1495 23 54 0 0 chr12 119376971 119377008 -1880522 + AT_rich Low_complexity Low_complexity 1 37 0 6 1495 534 272 0 34 chr12 119377579 119377697 -1879833 + PB1D9 SINE Alu 2 115 -5 6 1495 180 152 0 0 chr12 119377698 119377731 -1879799 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 6 1495 192 152 0 0 chr12 119377787 119377820 -1879710 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1495 442 288 82 96 chr12 119378558 119378704 -1878826 + ID_B1 SINE B4 99 246 -46 6 1495 635 93 0 27 chr12 119378771 119378881 -1878649 + (CA)n Simple_repeat Simple_repeat 2 108 0 6 1495 4802 179 39 4 chr12 119379392 119380159 -1877371 + Lx5 LINE L1 6254 7047 -3 6 1495 575 288 7 29 chr12 119380526 119380662 -1876868 + ID_B1 SINE B4 82 214 -10 6 1495 218 309 29 14 chr12 119381047 119381116 -1876414 + ID4_ SINE ID 13 82 -1 6 1495 260 255 131 10 chr12 119382373 119382426 -1875104 - MIR SINE MIR -77 131 75 6 1495 3105 66 199 12 chr12 119382426 119382857 -1874673 + RLTR1B LTR ERV1 1 512 0 6 1495 260 235 129 98 chr12 119382857 119382935 -1874595 - MIR SINE MIR -196 80 2 6 1495 7226 57 1 14 chr12 119382961 119383882 -1873648 - L1Md_F2 LINE L1 -1 6581 5673 6 1495 380 203 101 8 chr12 119383950 119384069 -1873461 + Tigger7 DNA MER2_type 2270 2399 -92 6 1495 1998 57 0 0 chr12 119384104 119384351 -1873179 - LTRIS2 LTR ERV1 -82 482 236 6 1495 2335 62 0 30 chr12 119384354 119384653 -1872877 - L1Md_F2 LINE L1 0 6582 6293 6 1495 9819 50 2 0 chr12 119384654 119385850 -1871680 + L1_Mm LINE L1 4257 5455 -428 6 1495 447 19 0 0 chr12 119386867 119386919 -1870611 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1495 32479 109 14 22 chr12 119387118 119393421 -1864109 + L1_Mus1 LINE L1 277 6567 0 6 1495 513 71 0 0 chr12 119394387 119394457 -1863073 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 6 1495 244 288 41 0 chr12 119395192 119395265 -1862265 + Kanga1c DNA Tc2 26 101 -628 6 1495 320 227 91 0 chr12 119395249 119395337 -1862193 + Kanga1c DNA Tc2 634 729 0 6 1495 306 0 0 0 chr12 119395966 119396000 -1861530 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 6 1495 384 22 0 0 chr12 119396001 119396046 -1861484 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 6 1495 541 266 94 49 chr12 119397212 119397457 -1860073 + MLT1A0 LTR MaLR 107 362 -3 6 1495 354 350 12 6 chr12 119397766 119397927 -1859603 + (CA)n Simple_repeat Simple_repeat 1 162 0 6 1495 306 175 34 101 chr12 119398065 119398154 -1859376 + B4 SINE B4 1 83 -209 6 1495 258 311 56 62 chr12 119398154 119398243 -1859287 + B3A SINE B2 1 177 -21 6 1495 205 371 54 54 chr12 119398750 119398898 -1858632 + L2b LINE L2 3226 3373 -2 6 1495 322 323 248 15 chr12 119398978 119399377 -1858153 - L2 LINE L2 -558 2861 2370 6 1495 294 308 90 8 chr12 119399768 119399902 -1857628 + L1M2 LINE L1 5545 5689 -623 6 1495 452 155 48 27 chr12 119399992 119400138 -1857392 + GA-rich Low_complexity Low_complexity 3 151 0 6 1495 269 299 31 0 chr12 119400174 119400271 -1857259 + L1MB3 LINE L1 5816 5915 -268 6 1495 216 0 0 0 chr12 119400840 119400864 -1856666 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1495 2142 44 0 0 chr12 119400906 119401149 -1856381 + L1_Mm LINE L1 5344 5586 -297 6 1495 8861 26 12 5 chr12 119401149 119402126 -1855404 + L1Md_F2 LINE L1 5587 6570 -12 6 1495 364 326 41 0 chr12 119402320 119402467 -1855063 - Tigger5 DNA MER2_type -2216 190 38 6 1495 207 0 0 0 chr12 119402564 119402587 -1854943 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1495 341 174 30 55 chr12 119402589 119402918 -1854612 + (CATA)n Simple_repeat Simple_repeat 1 320 0 6 1495 298 0 23 23 chr12 119402970 119403013 -1854517 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1495 352 131 28 28 chr12 119403084 119403155 -1854375 + B1_Mur4 SINE Alu 78 148 -2 6 1495 538 265 187 15 chr12 119403503 119404046 -1853484 - L1MDa LINE L1 -3636 2901 2255 6 1495 775 221 0 0 chr12 119404100 119404231 -1853299 + B1_Mur4 SINE Alu 1 131 -19 6 1495 641 114 0 9 chr12 119404242 119404348 -1853182 + (GGA)n Simple_repeat Simple_repeat 1 105 0 6 1495 1223 72 0 0 chr12 119404470 119404623 -1852907 + B2_Mm2 SINE B2 2 154 -41 6 1495 234 0 0 0 chr12 119404624 119404650 -1852880 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 6 1495 300 213 81 27 chr12 119404896 119405007 -1852523 + L1M3 LINE L1 3271 3387 -2759 6 1495 250 280 84 21 chr12 119405008 119405103 -1852427 + B1F2 SINE Alu 3 103 -46 6 1495 454 241 202 6 chr12 119405122 119405285 -1852245 + L1M3 LINE L1 3372 3566 -2574 6 1495 782 199 15 0 chr12 119405285 119405416 -1852114 + ETnERV2-int LTR ERVK 7070 7202 -204 6 1495 904 299 82 22 chr12 119405805 119406219 -1851311 + L1M3 LINE L1 3561 3999 -2141 6 1495 319 227 253 0 chr12 119406287 119406437 -1851093 + L1M3 LINE L1 4131 4318 -1828 6 186 263 140 40 0 chr12 119406559 119406609 -1850921 + B4 SINE B4 137 188 -104 6 1496 369 231 83 0 chr12 119406717 119406825 -1850705 + L1M3 LINE L1 4314 4430 -1716 6 1496 13994 96 67 42 chr12 119406834 119408661 -1848869 + Lx4A LINE L1 565 2459 -3418 6 1496 345 24 0 0 chr12 119408661 119408703 -1848827 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1496 13994 90 83 43 chr12 119408703 119409895 -1847635 + Lx4A LINE L1 2460 3677 -2200 6 1496 5894 122 18 8 chr12 119409893 119411465 -1846065 + Lx4A LINE L1 5360 7054 -4 6 1496 25 31 0 0 chr12 119411469 119411501 -1846029 + AT_rich Low_complexity Low_complexity 1 32 0 6 1496 886 294 174 14 chr12 119411546 119412109 -1845421 + L1M3 LINE L1 4435 5087 -1053 6 1496 353 186 0 41 chr12 119412100 119412173 -1845357 - L1MDa LINE L1 -4382 2251 2182 6 1496 301 268 14 40 chr12 119412173 119412247 -1845283 + ID4 SINE ID 2 73 -10 6 1496 269 319 27 82 chr12 119412247 119412320 -1845210 + ID_B1 SINE B4 2 140 -84 6 1496 431 256 144 0 chr12 119412420 119412656 -1844874 - L1MDa LINE L1 -4630 2003 1728 6 1496 218 377 0 0 chr12 119412670 119412731 -1844799 + B1F1 SINE Alu 1 61 -88 6 1496 280 260 78 0 chr12 119413017 119413094 -1844436 - L1MDa LINE L1 -5819 814 732 6 1496 180 0 0 0 chr12 119413109 119413129 -1844401 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1496 710 300 70 7 chr12 119413252 119413554 -1843976 - L1MDa LINE L1 -6174 459 139 6 1496 252 250 59 0 chr12 119413559 119413627 -1843903 + (CATG)n Simple_repeat Simple_repeat 3 74 0 6 1496 1151 103 0 0 chr12 119413982 119414128 -1843402 + B1_Mm SINE Alu 2 147 0 6 1496 1272 174 49 4 chr12 119414283 119414526 -1843004 + MTD LTR MaLR 1 254 -165 6 1496 270 243 15 135 chr12 119414538 119414671 -1842859 + Lx8 LINE L1 6101 6217 -1256 6 1496 939 239 11 11 chr12 119414685 119414871 -1842659 - B3 SINE B2 -30 186 1 6 1496 305 236 0 0 chr12 119414949 119415004 -1842526 + B3 SINE B2 1 55 -161 6 1496 23 0 0 0 chr12 119415305 119415328 -1842202 + AT_rich Low_complexity Low_complexity 1 23 0 6 1496 753 257 23 0 chr12 119416774 119416949 -1840581 + B3 SINE B2 2 180 -36 6 1496 301 284 84 0 chr12 119417038 119417133 -1840397 + B1F SINE Alu 40 142 -7 6 1496 1302 60 0 12 chr12 119417396 119417566 -1839964 + B2_Mm2 SINE B2 1 168 -27 6 1496 356 204 172 10 chr12 119417588 119417687 -1839843 + PB1D10 SINE Alu 3 117 0 6 1496 647 25 0 12 chr12 119417769 119417851 -1839679 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 6 1496 330 87 0 0 chr12 119417851 119417897 -1839633 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 6 1496 1289 296 83 39 chr12 119419328 119419844 -1837686 + Lx8 LINE L1 6218 6756 -717 6 1496 1425 269 89 17 chr12 119419879 119420352 -1837178 + Lx8 LINE L1 6905 7411 -62 6 1496 264 292 73 67 chr12 119420589 119420754 -1836776 + RLTR20D LTR ERVK 75 240 -328 6 1496 515 252 6 38 chr12 119421614 119421771 -1835759 + MER2 DNA MER2_type 114 265 -80 6 1496 288 250 0 0 chr12 119421870 119421922 -1835608 + RSINE1 SINE B4 3 54 -111 6 1496 464 184 10 0 chr12 119422252 119422355 -1835175 + (TA)n Simple_repeat Simple_repeat 2 105 0 6 1496 247 400 8 17 chr12 119422355 119422472 -1835058 - RMER12 LTR ERVK -471 851 736 6 1496 24 0 0 0 chr12 119422493 119422517 -1835013 + AT_rich Low_complexity Low_complexity 1 24 0 6 1496 336 243 10 0 chr12 119422538 119422641 -1834889 + (TTAG)n Simple_repeat Simple_repeat 3 106 0 6 1496 421 299 76 7 chr12 119422751 119422896 -1834634 + B4A SINE B4 128 282 -10 6 1496 975 147 31 0 chr12 119423754 119423917 -1833613 + URR1A DNA MER1_type 59 226 0 6 1496 457 265 10 0 chr12 119424056 119424154 -1833376 + ID_B1 SINE B4 113 211 -13 6 1496 24 0 0 0 chr12 119428069 119428093 -1829437 + AT_rich Low_complexity Low_complexity 1 24 0 6 1496 476 242 40 8 chr12 119428104 119428229 -1829301 - RSINE1 SINE B4 -29 136 8 6 1496 1801 220 57 10 chr12 119428558 119428944 -1828586 + MTD LTR MaLR 16 419 0 6 1496 1316 287 77 22 chr12 119429588 119430098 -1827432 + Lx8 LINE L1 6899 7436 -37 6 1496 539 252 0 0 chr12 119430135 119430242 -1827288 + B3A SINE B2 4 110 -88 6 1496 24 32 0 0 chr12 119430279 119430310 -1827220 + AT_rich Low_complexity Low_complexity 1 31 0 6 1496 1052 232 19 0 chr12 119430397 119430608 -1826922 + ID_B1 SINE B4 3 217 -7 6 1496 24 53 0 0 chr12 119430608 119430646 -1826884 + AT_rich Low_complexity Low_complexity 1 38 0 6 1496 337 290 32 21 chr12 119431506 119431601 -1825929 + B4A SINE B4 5 100 -192 6 1496 531 316 19 53 chr12 119432031 119432238 -1825292 + MLT1A LTR MaLR 167 366 -8 6 1496 2495 133 96 0 chr12 119432250 119432634 -1824896 - MTC LTR MaLR 0 421 1 6 1496 235 366 89 28 chr12 119432653 119432833 -1824697 - L2 LINE L2 -904 2515 2325 6 1496 22 35 0 0 chr12 119433176 119433205 -1824325 + AT_rich Low_complexity Low_complexity 1 29 0 6 1496 234 108 0 44 chr12 119433504 119433572 -1823958 + A-rich Low_complexity Low_complexity 2 66 0 6 1496 208 307 45 84 chr12 119433912 119434090 -1823440 - MER5B DNA MER1_type -5 173 3 6 1496 402 292 131 78 chr12 119434273 119434541 -1822989 - ORR1E LTR MaLR -1 358 77 6 1496 781 181 7 32 chr12 119436161 119436315 -1821215 + B3 SINE B2 65 214 -2 7 1496 605 155 64 79 chr12 119436461 119436601 -1820929 - B1F2 SINE Alu 0 149 12 7 1496 263 315 67 0 chr12 119438261 119438350 -1819180 - L2b LINE L2 -12 3363 3269 7 1496 3352 135 41 7 chr12 119438429 119438990 -1818540 + RMER12 LTR ERVK 1 580 -742 7 1496 5101 44 1 1 chr12 119438990 119439693 -1817837 - L1Md_F2 LINE L1 -632 5950 5249 7 1496 5272 55 18 3 chr12 119439715 119440341 -1817189 + L1Md_F2 LINE L1 5936 6570 -12 7 1496 964 154 40 80 chr12 119440342 119440568 -1816962 + RMER12 LTR ERVK 567 783 -539 7 1496 684 167 92 120 chr12 119440559 119440743 -1816787 + RMER12 LTR ERVK 976 1154 -168 7 1496 3261 91 95 4 chr12 119440803 119441278 -1816252 - Lx LINE L1 0 6654 6137 7 1496 253 217 83 0 chr12 119441417 119441477 -1816053 + MIR SINE MIR 82 146 -116 7 1496 390 42 0 0 chr12 119441754 119441802 -1815728 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1496 888 313 54 30 chr12 119441812 119442184 -1815346 - Lx8 LINE L1 -158 7315 6935 7 1496 932 262 125 4 chr12 119442179 119442443 -1815087 - Lx8 LINE L1 -776 6697 6402 7 1496 1695 305 58 60 chr12 119442470 119444031 -1813499 - L1M2 LINE L1 -3239 3310 1667 7 1496 180 0 0 0 chr12 119444039 119444059 -1813471 + (TTG)n Simple_repeat Simple_repeat 1 20 0 7 1496 180 273 109 0 chr12 119445676 119445731 -1811799 + L3 LINE CR1 3082 3142 -1347 7 1496 660 303 75 40 chr12 119445963 119446310 -1811220 - Lx8 LINE L1 -287 7186 6828 7 1496 305 358 87 7 chr12 119446425 119446563 -1810967 + L1MC LINE L1 5493 5641 -2241 7 1496 441 0 0 0 chr12 119447763 119447812 -1809718 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1496 6372 123 50 46 chr12 119447814 119449210 -1808320 - Lx LINE L1 -8 6646 5203 7 1496 1455 70 5 0 chr12 119449210 119449397 -1808133 - B2_Mm1t SINE B2 -5 188 1 7 1496 4318 167 21 152 chr12 119449397 119449420 -1808110 - Lx LINE L1 -684 5202 5182 7 1496 1021 128 0 0 chr12 119449420 119449568 -1807962 - B2_Mm2 SINE B2 -47 148 1 7 1496 4318 167 21 152 chr12 119449568 119449947 -1807583 - Lx LINE L1 -684 5181 4823 7 1496 253 261 0 0 chr12 119450034 119450099 -1807431 + L1_Mm LINE L1 5387 5451 -432 7 1496 351 293 75 48 chr12 119450110 119450257 -1807273 + B3A SINE B2 47 197 -1 7 1496 273 189 21 6 chr12 119450265 119450348 -1807182 + L1_Mur3 LINE L1 5462 5572 -602 7 1496 547 308 7 34 chr12 119450369 119450517 -1807013 + ID_B1 SINE B4 79 222 -2 7 1496 264 259 178 74 chr12 119450729 119450908 -1806622 + MLT1F-int LTR MaLR 16 219 -1270 7 1496 575 308 13 19 chr12 119450908 119451067 -1806463 + B3 SINE B2 1 158 -58 7 1496 492 18 0 0 chr12 119451068 119451125 -1806405 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1496 230 357 94 36 chr12 119451157 119451349 -1806181 + MLT1F-int LTR MaLR 211 413 -1076 7 1496 195 100 0 0 chr12 119451896 119451926 -1805604 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1496 352 300 200 57 chr12 119451978 119452279 -1805251 + L1MCa LINE L1 841 1184 -5218 7 1496 2097 96 50 0 chr12 119452330 119452633 -1804897 + ORR1A3 LTR MaLR 1 318 -8 7 1496 340 270 103 18 chr12 119452638 119452819 -1804711 + L1MCa LINE L1 1250 1551 -4866 7 1496 189 0 0 0 chr12 119453000 119453021 -1804509 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 7 1496 423 0 0 0 chr12 119453021 119453068 -1804462 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1496 245 315 78 26 chr12 119453068 119453271 -1804259 - MT2A LTR ERVL -57 476 206 7 1496 436 299 30 30 chr12 119453790 119453921 -1803609 - MTEa LTR MaLR -248 131 1 7 1496 373 239 80 60 chr12 119453930 119454081 -1803449 - ERVL-int LTR ERVL -11 5746 5593 7 1496 1218 208 150 19 chr12 119454094 119454461 -1803069 + MTD LTR MaLR 3 417 -2 7 1496 2686 134 82 108 chr12 119454506 119455083 -1802447 - RMER4B LTR ERVK -1 584 23 7 1496 798 67 0 0 chr12 119455205 119455310 -1802220 + (GGGAGA)n Simple_repeat Simple_repeat 3 107 0 7 1496 1271 237 68 16 chr12 119455315 119455353 -1802177 - ERVL-int LTR ERVL -277 5484 5447 7 1496 3426 23 2 10 chr12 119455353 119455752 -1801778 + MTA_Mm LTR MaLR 1 396 0 7 1496 9319 26 5 0 chr12 119455752 119456845 -1800685 + MTA_Mm-int LTR MaLR 1 1098 0 7 1496 3426 23 2 10 chr12 119456845 119457244 -1800286 + MTA_Mm LTR MaLR 1 396 0 7 1496 1271 237 68 16 chr12 119457244 119457572 -1799958 - ERVL-int LTR ERVL -315 5446 5099 7 1496 207 0 0 0 chr12 119457624 119457647 -1799883 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1496 714 276 81 66 chr12 119457657 119458067 -1799463 - RLTR11B LTR ERVK -77 451 10 7 1496 1874 212 51 7 chr12 119458135 119458587 -1798943 - ERVL-int LTR ERVL -796 4961 4490 7 1496 1443 239 24 13 chr12 119458625 119459006 -1798524 + Lx7 LINE L1 6887 7271 -425 7 1496 185 65 0 31 chr12 119459080 119459112 -1798418 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1496 22 35 0 0 chr12 119459240 119459269 -1798261 + AT_rich Low_complexity Low_complexity 1 29 0 7 1496 226 350 58 0 chr12 119459365 119459485 -1798045 - MIRb SINE MIR -47 221 95 7 1496 339 308 32 89 chr12 119460095 119460252 -1797278 - MLT1C LTR MaLR -9 458 311 7 1496 180 0 0 0 chr12 119460325 119460345 -1797185 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1496 1212 34 0 7 chr12 119460374 119460522 -1797008 - B1_Mus2 SINE Alu 0 147 1 7 1496 1834 170 76 15 chr12 119461263 119461591 -1795939 + ORR1B1 LTR MaLR 39 386 -8 7 1496 327 299 20 30 chr12 119461622 119461722 -1795808 - MLT1C LTR MaLR -497 113 15 7 1496 1970 297 99 40 chr12 119462861 119464326 -1793204 + Lx8 LINE L1 4063 5614 -266 7 1496 2824 60 52 3 chr12 119464340 119464354 -1793176 + MTB_Mm LTR MaLR 1 14 -393 7 1496 378 0 0 0 chr12 119464354 119464396 -1793134 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1496 2824 60 52 3 chr12 119464396 119464769 -1792761 + MTB_Mm LTR MaLR 15 405 -2 7 1496 403 309 62 66 chr12 119464777 119465065 -1792465 + Lx8 LINE L1 5641 5927 -1546 7 1496 1529 227 24 21 chr12 119465288 119465625 -1791905 - ORR1D1 LTR MaLR 0 374 37 7 1496 21 36 0 0 chr12 119465654 119465682 -1791848 + AT_rich Low_complexity Low_complexity 1 28 0 7 1496 588 204 81 40 chr12 119466075 119466213 -1791317 + B1_Mur1 SINE Alu 1 143 -6 7 1496 2596 37 3 0 chr12 119466505 119466830 -1790700 + IAPEY2_LTR LTR ERVK 32 357 0 7 1496 339 323 102 79 chr12 119467826 119468265 -1789265 - MLT1F1 LTR MaLR -2 558 47 7 1496 333 237 122 51 chr12 119468288 119468386 -1789144 + B1F1 SINE Alu 6 110 -7 7 1496 612 257 7 35 chr12 119468437 119468582 -1788948 + ID_B1 SINE B4 81 221 -3 7 1496 767 269 70 39 chr12 119469375 119469634 -1787896 - MLT1A0 LTR MaLR -8 357 91 7 1496 603 236 7 54 chr12 119470746 119470894 -1786636 - Charlie22a DNA MER1_type -1 490 350 7 1496 21 36 0 0 chr12 119470907 119470935 -1786595 + AT_rich Low_complexity Low_complexity 1 28 0 7 1496 537 330 50 16 chr12 119471407 119471589 -1785941 + MLT1A0 LTR MaLR 1 188 -177 7 1496 216 171 0 0 chr12 119471908 119471943 -1785587 + CT-rich Low_complexity Low_complexity 1 35 0 7 1496 222 235 0 0 chr12 119473648 119473699 -1783831 + T-rich Low_complexity Low_complexity 1 51 0 7 1496 22 0 0 0 chr12 119474681 119474703 -1782827 + AT_rich Low_complexity Low_complexity 1 22 0 7 1496 34 55 0 0 chr12 119476883 119476938 -1780592 + AT_rich Low_complexity Low_complexity 1 55 0 7 1496 239 246 65 16 chr12 119477031 119477093 -1780437 - ID4_ SINE ID -15 68 4 7 1496 208 137 59 0 chr12 119477101 119477152 -1780378 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 7 1496 24 0 0 0 chr12 119477502 119477526 -1780004 + AT_rich Low_complexity Low_complexity 1 24 0 7 1496 2783 119 93 41 chr12 119477650 119478157 -1779373 + RMER16 LTR ERVK 1 533 0 7 1496 37126 80 19 15 chr12 119478157 119482214 -1775316 + RMER16-int LTR ERVK 1 4080 -1326 7 1496 1143 95 0 0 chr12 119482214 119482362 -1775168 + B1_Mus1 SINE Alu 1 148 0 7 1496 37126 80 19 15 chr12 119482362 119483687 -1773843 + RMER16-int LTR ERVK 4081 5406 0 7 1496 2411 140 129 35 chr12 119483687 119484174 -1773356 + RMER16 LTR ERVK 1 533 0 7 1496 312 347 392 26 chr12 119485415 119485653 -1771877 + MLT1E2 LTR MaLR 1 310 -317 7 1496 270 0 0 0 chr12 119485653 119485683 -1771847 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 7 1496 312 336 241 27 chr12 119485683 119485902 -1771628 + MLT1E2 LTR MaLR 311 592 -35 7 1496 242 244 87 31 chr12 119485949 119486076 -1771454 - L1MEf LINE L1 -2212 3934 3801 7 1496 330 259 35 23 chr12 119486415 119486502 -1771028 + ID SINE ID 2 89 -135 7 1496 339 184 11 33 chr12 119486681 119486771 -1770759 - L1MEf LINE L1 -3185 2961 2874 7 1496 283 226 0 0 chr12 119486793 119486846 -1770684 + B1F SINE Alu 68 120 -29 7 1496 210 37 0 0 chr12 119486954 119486981 -1770549 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 7 1496 529 294 0 0 chr12 119486982 119487091 -1770439 - B1_Mur1 SINE Alu -39 110 2 7 1496 848 282 61 19 chr12 119487274 119487538 -1769992 + B4A SINE B4 10 284 -8 7 1496 386 305 54 19 chr12 119487591 119487725 -1769805 - B1F SINE Alu -7 143 5 7 1496 386 317 220 36 chr12 119487725 119488447 -1769083 - L1MEf LINE L1 -4815 1427 574 7 1496 405 335 97 74 chr12 119488511 119488727 -1768803 + B4A SINE B4 2 222 -70 7 1496 468 0 0 0 chr12 119488802 119488854 -1768676 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1496 315 0 0 0 chr12 119490240 119490275 -1767255 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1496 568 238 27 20 chr12 119490404 119490550 -1766980 - B1_Mur1 SINE Alu -1 148 2 7 1496 200 194 0 0 chr12 119491412 119491448 -1766082 + GA-rich Low_complexity Low_complexity 3 38 0 7 1496 24 0 0 0 chr12 119491546 119491570 -1765960 + AT_rich Low_complexity Low_complexity 1 24 0 7 1496 219 193 17 17 chr12 119492620 119492678 -1764852 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 7 1496 298 315 72 0 chr12 119493295 119493406 -1764124 - B1F SINE Alu -20 129 11 7 1496 817 80 89 0 chr12 119493477 119493589 -1763941 + B1_Mus1 SINE Alu 16 137 -11 7 1496 336 307 177 44 chr12 119493613 119494155 -1763375 + L1ME1 LINE L1 5 618 -6716 7 1496 358 291 213 5 chr12 119494429 119494650 -1762880 + L1ME1 LINE L1 4073 4339 -2667 7 1496 615 233 52 8 chr12 119494728 119494862 -1762668 - B1_Mur2 SINE Alu 0 149 10 7 1496 459 0 0 0 chr12 119494879 119494930 -1762600 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1496 277 247 0 0 chr12 119495179 119495252 -1762278 + L1ME1 LINE L1 4610 4682 -2324 7 1496 696 284 58 39 chr12 119495727 119495837 -1761693 - Lx7 LINE L1 -285 7411 7291 7 1496 180 0 0 0 chr12 119495837 119495857 -1761673 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1496 696 284 58 39 chr12 119495857 119496054 -1761476 - Lx7 LINE L1 -406 7290 7098 7 1496 3982 238 89 43 chr12 119496060 119497801 -1759729 - Lx7 LINE L1 -756 6940 5106 7 1496 666 307 36 6 chr12 119497801 119497968 -1759562 - B3 SINE B2 0 216 45 7 1496 1266 188 18 7 chr12 119497977 119498251 -1759279 - Lx7 LINE L1 -770 5110 4834 7 1496 740 255 61 10 chr12 119498260 119498458 -1759072 - B3 SINE B2 -7 209 2 7 1496 617 307 82 35 chr12 119498468 119498921 -1758609 + L1ME1 LINE L1 5095 5568 -1438 7 1496 559 297 187 40 chr12 119498900 119499840 -1757690 + L1ME1 LINE L1 5717 6851 -188 7 1496 576 152 0 0 chr12 119500684 119500783 -1756747 + (CATA)n Simple_repeat Simple_repeat 2 100 0 1 1496 353 292 44 94 chr12 119500846 119501005 -1756525 + B4 SINE B4 70 220 -72 2 1496 869 183 0 0 chr12 119500868 119501010 -1756520 + B1_Mus1 SINE Alu 6 147 -1 3 1496 717 176 48 0 chr12 119501155 119501294 -1756236 - B1F SINE Alu -1 149 5 4 1496 332 296 55 73 chr12 119501294 119501309 -1756221 - B4A SINE B4 -58 178 74 5 1496 468 91 0 0 chr12 119501325 119501391 -1756139 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 6 1496 244 161 32 0 chr12 119501396 119501458 -1756072 + (TA)n Simple_repeat Simple_repeat 1 64 0 7 1496 1463 58 21 0 chr12 119501938 119502127 -1755403 + B2_Mm2 SINE B2 1 193 -2 8 1496 468 109 0 52 chr12 119502137 119502234 -1755296 + A-rich Low_complexity Low_complexity 3 94 0 9 1496 570 318 59 87 chr12 119502351 119502396 -1755134 - MER2 DNA MER2_type 0 345 301 1 1496 2147 188 72 33 chr12 119502396 119502909 -1754621 + RMER16 LTR ERVK 1 533 0 1 1496 570 318 59 87 chr12 119502909 119503105 -1754425 - MER2 DNA MER2_type -45 300 111 1 1496 817 203 14 0 chr12 119503105 119503248 -1754282 + B1_Mur2 SINE Alu 5 149 0 1 1496 570 318 59 87 chr12 119503248 119503360 -1754170 - MER2 DNA MER2_type -235 110 1 1 1496 521 224 78 31 chr12 119503565 119503694 -1753836 + B1_Mur1 SINE Alu 2 136 -13 1 1496 258 319 0 14 chr12 119503727 119503797 -1753733 + ID4_ SINE ID 1 69 -14 1 1496 226 274 0 64 chr12 119503734 119503812 -1753718 + tRNA-Ala-GCY_ tRNA tRNA 2 74 -1 1 1496 261 389 68 49 chr12 119504510 119504835 -1752695 + L2b LINE L2 2921 3257 -169 1 1496 764 279 63 32 chr12 119504854 119505106 -1752424 - B4A SINE B4 -18 274 15 1 1496 210 333 0 60 chr12 119505288 119505355 -1752175 - PB1D10 SINE Alu -54 63 1 1 1496 325 245 122 52 chr12 119505411 119505583 -1751947 + B3A SINE B2 3 186 -9 1 1496 234 0 0 0 chr12 119506224 119506250 -1751280 + (CACCT)n Simple_repeat Simple_repeat 4 29 0 2 1496 185 373 0 0 chr12 119506510 119506577 -1750953 + L2 LINE L2 2532 2598 -821 2 1496 505 289 83 0 chr12 119507640 119507761 -1749769 + RSINE1 SINE B4 4 134 -31 2 1496 474 260 4 1 chr12 119509100 119509206 -1748324 + PB1D10 SINE Alu 3 110 -39 2 1496 601 291 118 27 chr12 119509671 119509858 -1747672 + B4A SINE B4 71 274 -18 2 1496 261 0 0 0 chr12 119509867 119509896 -1747634 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1496 689 70 0 10 chr12 119509896 119509996 -1747534 + (GA)n Simple_repeat Simple_repeat 2 101 0 2 1496 204 250 39 0 chr12 119510603 119510655 -1746875 + L2c LINE L2 3333 3386 -1 2 1496 432 273 49 16 chr12 119510972 119511095 -1746435 + B4 SINE B4 166 292 0 2 1496 263 300 64 43 chr12 119511045 119511139 -1746391 + B3 SINE B2 113 208 -8 2 1496 268 170 226 0 chr12 119512295 119512348 -1745182 - RSINE1 SINE B4 -99 66 2 3 1496 374 70 35 0 chr12 119512625 119512682 -1744848 + (CATA)n Simple_repeat Simple_repeat 3 61 0 3 1496 1215 61 0 0 chr12 119513836 119513983 -1743547 + B1_Mus1 SINE Alu 2 148 0 3 1496 972 182 45 100 chr12 119514237 119514358 -1743172 - B3 SINE B2 -8 208 84 3 1496 2888 38 0 6 chr12 119514358 119514702 -1742828 + ORR1A1 LTR MaLR 5 346 0 3 1496 972 182 45 100 chr12 119514702 119514800 -1742730 - B3 SINE B2 -133 83 1 3 1496 740 263 204 20 chr12 119515535 119516032 -1741498 + Lx7 LINE L1 5287 5909 -1787 3 1496 28 0 0 0 chr12 119516034 119516062 -1741468 + AT_rich Low_complexity Low_complexity 1 28 0 3 1496 189 147 0 0 chr12 119516066 119516100 -1741430 + (TCTCCC)n Simple_repeat Simple_repeat 4 37 0 3 1496 7978 25 3 3 chr12 119516222 119517152 -1740378 + L1Md_F2 LINE L1 5653 6582 0 3 1496 186 43 0 0 chr12 119517433 119517456 -1740074 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1496 1160 75 7 0 chr12 119517532 119517678 -1739852 - B1_Mus1 SINE Alu 0 148 2 4 1496 874 276 52 0 chr12 119517729 119518001 -1739529 - B4 SINE B4 -2 290 5 4 1496 186 133 0 0 chr12 119518308 119518338 -1739192 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 4 1496 907 247 103 38 chr12 119518861 119519122 -1738408 - B4A SINE B4 -1 291 14 4 1496 532 298 30 89 chr12 119519227 119519513 -1738017 + B4A SINE B4 1 279 -13 4 1496 23 78 0 0 chr12 119519689 119519740 -1737790 + AT_rich Low_complexity Low_complexity 1 51 0 4 1496 418 310 38 23 chr12 119520043 119520175 -1737355 + ORR1E LTR MaLR 1 134 -225 4 1496 198 0 0 0 chr12 119520373 119520395 -1737135 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1496 795 282 36 47 chr12 119520517 119520788 -1736742 - MER74A LTR ERVL -78 544 245 4 1496 803 274 22 22 chr12 119520807 119520986 -1736544 + B4A SINE B4 17 195 -97 4 1496 226 250 0 0 chr12 119521020 119521068 -1736462 - MER74A LTR ERVL -477 81 34 4 1496 409 332 85 40 chr12 119521103 119521304 -1736226 + B4A SINE B4 3 212 -80 5 1496 1972 177 59 0 chr12 119521310 119521682 -1735848 - BGLII_B LTR ERVK -47 394 1 5 1496 875 252 28 5 chr12 119521818 119522029 -1735501 + B3 SINE B2 1 216 0 5 1496 226 263 125 76 chr12 119522418 119522562 -1734968 - MIRc SINE MIR -1 261 111 5 1496 289 257 82 41 chr12 119522977 119523123 -1734407 + L1MA8 LINE L1 6109 6260 -31 5 1496 269 252 36 73 chr12 119523794 119523832 -1733698 + MT2B LTR ERVL 131 163 -438 5 1496 400 244 176 0 chr12 119523832 119523951 -1733579 + B1F1 SINE Alu 2 141 -8 5 1496 220 299 14 69 chr12 119524520 119524592 -1732938 + ID_B1 SINE B4 90 157 -67 5 1496 417 311 146 15 chr12 119525239 119525438 -1732092 + MIRb SINE MIR 19 243 -25 5 1496 251 225 14 0 chr12 119526249 119526320 -1731210 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1496 474 219 86 39 chr12 119526619 119526747 -1730783 + B1_Mur2 SINE Alu 1 134 -15 6 1496 380 20 20 0 chr12 119526775 119526824 -1730706 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1496 32 67 0 0 chr12 119527020 119527080 -1730450 + AT_rich Low_complexity Low_complexity 1 60 0 6 1496 219 371 96 0 chr12 119529235 119529432 -1728098 - L3 LINE CR1 -323 4166 3951 6 1496 254 298 16 73 chr12 119529568 119529691 -1727839 - L3 LINE CR1 -788 3701 3586 6 1496 1086 60 0 0 chr12 119529717 119529851 -1727679 + B1_Mus2 SINE Alu 1 134 -13 6 1496 225 83 0 0 chr12 119529851 119529887 -1727643 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1496 345 232 14 14 chr12 119530026 119530094 -1727436 + ID_B1 SINE B4 88 155 -69 6 1496 417 243 78 0 chr12 119530094 119530197 -1727333 + RSINE1 SINE B4 1 111 -54 6 1496 21 36 0 0 chr12 119530235 119530263 -1727267 + AT_rich Low_complexity Low_complexity 1 28 0 6 1496 1100 83 0 27 chr12 119530266 119530414 -1727116 + B1_Mus2 SINE Alu 2 145 -2 6 1496 231 328 104 67 chr12 119531052 119531078 -1726452 + ID_B1 SINE B4 69 207 -17 7 1496 364 234 148 9 chr12 119531078 119531186 -1726344 + B1F1 SINE Alu 10 132 -17 7 1496 535 255 28 14 chr12 119531306 119531449 -1726081 - B1F SINE Alu 0 149 5 7 1496 734 145 126 30 chr12 119531862 119531997 -1725533 - B1_Mur3 SINE Alu -1 148 1 7 1496 1807 169 93 6 chr12 119532644 119532989 -1724541 - MTC LTR MaLR 0 421 47 7 1496 574 155 8 8 chr12 119532990 119533107 -1724423 + CT-rich Low_complexity Low_complexity 1 117 0 7 1496 910 77 0 0 chr12 119533107 119533224 -1724306 - B1_Mus1 SINE Alu -14 134 18 7 1496 481 105 26 13 chr12 119533226 119533303 -1724227 - MTC LTR MaLR -341 80 3 7 1496 261 243 29 0 chr12 119534116 119534186 -1723344 - PB1D9 SINE Alu -48 72 1 7 1496 548 229 173 46 chr12 119534672 119534869 -1722661 + ID_B1 SINE B4 1 222 -2 7 1496 331 250 142 24 chr12 119534915 119535042 -1722488 + L1MA5 LINE L1 6050 6191 -109 7 1496 365 324 146 28 chr12 119535849 119536027 -1721503 - MER3 DNA MER1_type -1 208 10 8 1497 204 205 0 0 chr12 119539414 119539453 -1718077 + G-rich Low_complexity Low_complexity 4 42 0 8 1497 217 280 0 0 chr12 119539547 119539597 -1717933 + C-rich Low_complexity Low_complexity 5 54 0 8 1497 39 60 0 0 chr12 119539927 119539994 -1717536 + GC_rich Low_complexity Low_complexity 1 67 0 8 1497 317 244 176 0 chr12 119542104 119542223 -1715307 + MLT1A0 LTR MaLR 226 365 0 8 1497 704 214 7 35 chr12 119542451 119542596 -1714934 + B1_Mur1 SINE Alu 1 141 -8 8 1497 686 222 98 6 chr12 119542635 119542798 -1714732 + MER31B LTR ERV1 1 178 -288 8 1497 285 244 64 0 chr12 119542830 119542908 -1714622 + MER31B LTR ERV1 278 360 -106 8 1497 545 226 25 11 chr12 119542876 119543017 -1714513 - ID_B1 SINE B4 -148 144 4 8 1497 4811 112 21 67 chr12 119543487 119544328 -1713202 + RLTR13B4 LTR ERVK 1 803 0 8 1497 214 216 0 139 chr12 119544588 119544674 -1712856 + PB1D10 SINE Alu 43 116 -1 8 1497 202 229 0 0 chr12 119544675 119544723 -1712807 + A-rich Low_complexity Low_complexity 1 48 0 9 1497 355 360 59 30 chr12 119545147 119545350 -1712180 + MIR SINE MIR 20 228 -34 9 1497 958 70 14 14 chr12 119546300 119546444 -1711086 + (TCTCCC)n Simple_repeat Simple_repeat 6 149 0 9 1497 195 238 0 0 chr12 119546627 119546669 -1710861 + L2a LINE L2 3381 3422 -4 9 1497 455 206 71 10 chr12 119546723 119546741 -1710789 - PB1D10 SINE Alu 0 117 93 9 1497 281 26 26 0 chr12 119546741 119546779 -1710751 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1497 455 206 71 10 chr12 119546779 119546858 -1710672 - PB1D10 SINE Alu -25 92 14 9 1497 397 320 77 48 chr12 119547137 119547344 -1710186 - L4 LINE RTE -116 1913 1701 9 1497 752 48 86 0 chr12 119547453 119547558 -1709972 + BC1_Mm scRNA scRNA 1 114 -38 9 1497 204 208 0 19 chr12 119547639 119547670 -1709860 + polypurine Low_complexity Low_complexity 3 32 0 9 1497 1166 81 0 0 chr12 119547670 119547818 -1709712 + B1_Mus1 SINE Alu 1 148 0 9 1497 204 208 0 19 chr12 119547818 119547840 -1709690 + polypurine Low_complexity Low_complexity 33 54 0 1 1497 1061 223 9 24 chr12 119547840 119548051 -1709479 + B3 SINE B2 9 216 0 1 1497 715 259 7 0 chr12 119548213 119548352 -1709178 + RSINE1 SINE B4 10 149 -16 1 1497 1320 66 28 6 chr12 119548582 119548764 -1708766 + B2_Mm2 SINE B2 2 187 -8 1 1497 274 263 35 0 chr12 119549087 119549144 -1708386 - tRNA-Ala-GCY_ tRNA tRNA -14 61 3 1 1497 191 307 112 11 chr12 119549377 119549466 -1708064 + MIR SINE MIR 94 191 -71 1 1497 188 356 23 11 chr12 119550631 119550719 -1706811 + L3 LINE CR1 4205 4293 -196 1 1497 332 322 74 8 chr12 119551547 119551669 -1705861 + MIRc SINE MIR 1 130 -138 1 1497 260 253 165 21 chr12 119552637 119552734 -1704796 - MIR SINE MIR -58 150 40 1 1497 347 292 67 18 chr12 119552919 119553075 -1704455 - MIR SINE MIR -82 186 16 1 1497 777 282 5 33 chr12 119553422 119553635 -1703895 + ID_B1 SINE B4 3 209 -15 1 1497 797 235 176 31 chr12 119554343 119554512 -1703018 + MTEa LTR MaLR 3 190 -189 1 1497 1037 17 13 52 chr12 119554512 119554821 -1702709 + (TC)n Simple_repeat Simple_repeat 1 296 0 1 1497 492 86 0 0 chr12 119554821 119554890 -1702640 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1497 797 188 80 156 chr12 119554890 119555019 -1702511 + MTEa LTR MaLR 191 348 -31 1 1497 207 0 0 0 chr12 119555037 119555060 -1702470 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1497 324 184 56 21 chr12 119555697 119555841 -1701689 + (TA)n Simple_repeat Simple_repeat 2 150 0 1 1497 1118 216 62 171 chr12 119555979 119556399 -1701131 + ORR1D1 LTR MaLR 1 374 0 1 1497 269 295 134 33 chr12 119556519 119556743 -1700787 - L2b LINE L2 -339 3080 2830 1 1497 1157 321 72 89 chr12 119556743 119557604 -1699926 + MER21B LTR ERV1 1 846 -17 1 1497 180 0 0 0 chr12 119558735 119558755 -1698775 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1497 1107 60 0 0 chr12 119559145 119559279 -1698251 + B1_Mus2 SINE Alu 1 134 -13 1 1497 215 200 0 0 chr12 119559279 119559319 -1698211 + G-rich Low_complexity Low_complexity 1 40 0 1 1497 1003 171 102 5 chr12 119559563 119559769 -1697761 + URR1A DNA MER1_type 1 226 0 1 1497 430 274 9 0 chr12 119560393 119560506 -1697024 - MLT1A1 LTR MaLR 0 408 295 1 1497 2023 143 115 11 chr12 119560698 119561073 -1696457 + MTC LTR MaLR 1 414 -7 1 1497 388 259 481 38 chr12 119561075 119561287 -1696243 - MTEb LTR MaLR -54 325 20 1 1497 582 254 135 15 chr12 119561312 119561612 -1695918 - L1M4 LINE L1 -810 5330 5011 1 1497 189 349 63 53 chr12 119561656 119561862 -1695668 + MIRb SINE MIR 55 262 -6 1 1497 358 298 72 8 chr12 119562412 119562537 -1694993 - MER5A DNA MER1_type 0 189 57 1 1497 2538 155 22 5 chr12 119563484 119563898 -1693632 - MTC LTR MaLR 0 421 1 1 1497 372 265 6 19 chr12 119564001 119564119 -1693411 + PB1D10 SINE Alu 6 128 -21 1 1497 279 189 53 13 chr12 119564397 119564472 -1693058 - MTE2a LTR MaLR 0 379 302 1 1497 2392 147 57 19 chr12 119565229 119565813 -1691717 + RMER6A LTR ERVK 1 652 -104 1 1497 4165 127 10 85 chr12 119565929 119566661 -1690869 + RLTR33 LTR ERVK 2 678 0 1 1497 338 96 39 0 chr12 119566661 119566713 -1690817 + RMER6A LTR ERVK 625 678 -78 1 1497 591 326 114 14 chr12 119567022 119567380 -1690150 + Arthur1B DNA Tip100 168 561 -664 1 1497 528 283 22 0 chr12 119567589 119567727 -1689803 - B4 SINE B4 -144 148 8 1 1497 360 281 142 43 chr12 119567755 119568130 -1689400 + Arthur1B DNA Tip100 796 1213 -12 1 1497 568 346 71 26 chr12 119568235 119568502 -1689028 + B4A SINE B4 14 292 0 1 1497 344 283 0 24 chr12 119568626 119568749 -1688781 + BC1_Mm scRNA scRNA 15 134 -18 1 1497 252 182 104 24 chr12 119568752 119568840 -1688690 + L1M LINE L1 5300 5397 -947 1 1497 3329 53 2 0 chr12 119568840 119569235 -1688295 - MTA_Mm LTR MaLR 0 396 1 1 1497 249 226 65 47 chr12 119569235 119569278 -1688252 + L1M LINE L1 5398 5437 -907 1 1497 3208 125 49 9 chr12 119569327 119569793 -1687737 + RLTR20A2 LTR ERVK 1 479 -99 1 1497 324 0 0 0 chr12 119569793 119569829 -1687701 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1497 3208 125 49 9 chr12 119569829 119569918 -1687612 + RLTR20A2 LTR ERVK 480 577 -1 1 1497 391 327 152 60 chr12 119569920 119570288 -1687242 + MER21B LTR ERV1 329 730 -133 1 1497 373 238 69 38 chr12 119570381 119570512 -1687018 + LTR83 LTR ERVL 563 697 -83 1 1497 198 0 0 0 chr12 119570765 119570787 -1686743 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1497 213 121 0 0 chr12 119571688 119571721 -1685809 + (GGGAGA)n Simple_repeat Simple_repeat 3 35 0 1 1497 180 0 0 0 chr12 119571860 119571880 -1685650 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1497 254 286 56 14 chr12 119571892 119571963 -1685567 + ID4_ SINE ID 1 74 -9 1 1497 3436 87 159 0 chr12 119572544 119573048 -1684482 + MT2B2 LTR ERVL 1 584 0 1 1497 1628 219 76 18 chr12 119573053 119573448 -1684082 - MTD LTR MaLR 0 419 2 1 1497 348 340 60 37 chr12 119573962 119574179 -1683351 - MTEa LTR MaLR -157 222 1 1 1497 1131 55 7 7 chr12 119574316 119574463 -1683067 - B1_Mm SINE Alu 0 147 1 1 1497 330 192 0 133 chr12 119574468 119574558 -1682972 - MTE-int LTR MaLR -124 1456 1379 1 1497 414 0 0 0 chr12 119574559 119574605 -1682925 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1497 1362 303 61 24 chr12 119574668 119575209 -1682321 - MTE-int LTR MaLR -194 1386 826 1 1497 2068 122 68 6 chr12 119575301 119575639 -1681891 - ORR1B2 LTR MaLR -8 359 1 1 1497 723 347 81 21 chr12 119576336 119576757 -1680773 - MTE-int LTR MaLR -1134 446 1 1 1497 23 54 0 0 chr12 119577190 119577227 -1680303 + AT_rich Low_complexity Low_complexity 1 37 0 1 1497 452 196 16 0 chr12 119577231 119577332 -1680198 + PB1D10 SINE Alu 10 111 -6 1 1497 404 248 44 0 chr12 119578213 119578320 -1679210 + B1F1 SINE Alu 4 115 -2 1 1497 577 200 414 0 chr12 119578325 119578470 -1679060 + B3 SINE B2 1 205 -11 1 1497 27 62 0 0 chr12 119578470 119578518 -1679012 + AT_rich Low_complexity Low_complexity 1 48 0 1 1497 315 0 0 0 chr12 119578763 119578798 -1678732 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1497 247 361 14 156 chr12 119578827 119578968 -1678562 + MER21B LTR ERV1 34 154 -709 1 1497 219 204 20 0 chr12 119579111 119579160 -1678370 + B1F2 SINE Alu 12 61 -88 1 1497 230 341 91 6 chr12 119579251 119579416 -1678114 + MER21B LTR ERV1 390 568 -295 1 1497 38297 59 8 18 chr12 119579457 119585580 -1671950 - L1Md_F3 LINE L1 -100 6484 217 1 1497 505 291 92 36 chr12 119586036 119586601 -1670929 - L1MA4 LINE L1 -279 6024 5659 1 1497 411 38 0 0 chr12 119586624 119586677 -1670853 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1497 346 234 26 0 chr12 119586677 119586754 -1670776 - RSINE1 SINE B4 -41 124 46 1 1497 342 0 0 0 chr12 119587813 119587851 -1669679 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1497 279 0 0 0 chr12 119588447 119588478 -1669052 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1497 634 288 0 0 chr12 119588487 119588619 -1668911 - RSINE1 SINE B4 -30 135 4 1 1497 238 169 17 17 chr12 119589129 119589189 -1668341 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1497 699 258 76 0 chr12 119589203 119589401 -1668129 - ID_B1 SINE B4 -7 217 5 1 1497 949 216 14 32 chr12 119589439 119589659 -1667871 - B3 SINE B2 0 216 1 1 1497 1919 282 54 21 chr12 119589769 119590304 -1667226 + Lx5 LINE L1 6498 7050 0 1 1497 252 0 0 0 chr12 119590516 119590544 -1666986 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1497 340 195 2 89 chr12 119591638 119591753 -1665777 + ID4_ SINE ID 1 106 -46 1 1497 243 293 13 13 chr12 119592649 119592725 -1664805 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 1 1497 2303 91 25 3 chr12 119592736 119593056 -1664474 + IAPLTR2b LTR ERVK 1 327 0 1 1497 20883 57 25 54 chr12 119593057 119595905 -1661625 + IAPEz-int LTR ERVK 9 2774 -3707 1 1497 3145 14 8 0 chr12 119595903 119596257 -1661273 + IAPEz-int LTR ERVK 4001 4357 -2124 1 1497 6502 36 5 13 chr12 119596248 119597025 -1660505 + IAPEz-int LTR ERVK 5709 6479 -2 1 1497 2301 91 25 3 chr12 119597027 119597347 -1660183 + IAPLTR2b LTR ERVK 1 327 0 1 1497 327 218 81 0 chr12 119597355 119597442 -1660088 - B4A SINE B4 0 292 199 1 1497 21 0 0 0 chr12 119599330 119599351 -1658179 + AT_rich Low_complexity Low_complexity 1 21 0 1 1497 2960 165 36 68 chr12 119599599 119600230 -1657300 - Lx4A LINE L1 0 7058 6448 1 1497 2581 48 0 0 chr12 119600230 119600539 -1656991 + L1_Mus1 LINE L1 6259 6567 0 1 1497 2716 91 16 3 chr12 119600549 119600912 -1656618 - Lx4A LINE L1 -451 6607 6240 1 1497 3234 211 31 35 chr12 119600977 119601710 -1655820 + Lx9 LINE L1 6625 7354 -290 1 1497 7230 43 2 4 chr12 119601708 119602695 -1654835 - L1Md_F2 LINE L1 -583 5999 5015 1 1497 4798 49 12 3 chr12 119602695 119603326 -1654204 + L1Md_F2 LINE L1 5989 6582 0 1 1497 422 233 158 0 chr12 119603345 119603478 -1654052 + Lx9 LINE L1 7360 7513 -131 1 1497 2743 80 59 5 chr12 119603570 119603960 -1653570 + RLTR10A LTR ERVK 1 411 0 1 1497 443 239 154 21 chr12 119604886 119605167 -1652363 - L1MB5 LINE L1 -15 6168 5838 1 1497 526 315 0 0 chr12 119605167 119605316 -1652214 + MER58A DNA MER1_type 52 200 -24 1 1497 1161 75 0 0 chr12 119606478 119606625 -1650905 - B1_Mm SINE Alu 0 147 1 1 1497 473 272 71 36 chr12 119606846 119607014 -1650516 - L1MB5 LINE L1 -79 6095 5922 1 1497 238 261 15 0 chr12 119607334 119607399 -1650131 - L1MB5 LINE L1 -573 5601 5536 1 1497 1038 244 78 16 chr12 119607724 119607982 -1649548 + B4A SINE B4 1 274 -18 1 1497 458 161 0 11 chr12 119608048 119608142 -1649388 + GA-rich Low_complexity Low_complexity 5 97 0 1 1497 425 279 0 9 chr12 119608680 119608785 -1648745 + PB1D10 SINE Alu 7 110 -7 1 1497 805 256 33 19 chr12 119609701 119609912 -1647618 - ID_B1 SINE B4 -9 215 2 1 1497 315 207 155 135 chr12 119610792 119610999 -1646531 - ID_B1 SINE B4 -13 211 1 1 1497 378 237 107 33 chr12 119611206 119611328 -1646202 - B1F SINE Alu -14 135 5 1 1497 614 206 83 15 chr12 119611564 119611697 -1645833 + B1_Mur1 SINE Alu 5 146 -3 1 1497 798 261 114 17 chr12 119612880 119613182 -1644348 - L1MB4 LINE L1 -84 6096 5768 1 1497 2893 95 24 10 chr12 119613440 119613856 -1643674 + BGLII_Mus LTR ERVK 1 422 0 1 1497 335 318 68 50 chr12 119613917 119614162 -1643368 + MLT1E2 LTR MaLR 358 587 -37 1 1497 1461 258 59 38 chr12 119614178 119614715 -1642815 - Lx6 LINE L1 -30 7430 6507 2 1497 183 42 0 0 chr12 119616000 119616024 -1641506 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 2 1497 210 344 85 43 chr12 119617254 119617418 -1640112 + B4A SINE B4 52 222 -70 2 1497 689 222 30 0 chr12 119617288 119617423 -1640107 + B1_Mus2 SINE Alu 9 147 0 2 1497 703 294 56 35 chr12 119617694 119618032 -1639498 - MER2 DNA MER2_type 0 345 1 2 1497 947 284 42 5 chr12 119618186 119618446 -1639084 + B4 SINE B4 8 291 -1 2 1497 297 0 0 0 chr12 119618450 119618483 -1639047 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1497 6633 14 0 0 chr12 119618815 119619517 -1638013 - L1Md_A LINE L1 0 6582 5881 2 1497 749 250 236 4 chr12 119619740 119619969 -1637561 - B4A SINE B4 -6 286 5 2 1497 510 142 239 0 chr12 119620180 119620314 -1637216 - L1M5 LINE L1 -705 5474 5309 2 1497 42216 5 0 0 chr12 119620289 119626867 -1630663 - L1Md_A LINE L1 0 6582 5 2 1497 441 215 35 69 chr12 119626933 119627078 -1630452 + B3 SINE B2 75 214 -2 2 1497 725 208 0 0 chr12 119627190 119627310 -1630220 - B1_Mur1 SINE Alu -22 127 8 2 1497 188 34 0 33 chr12 119627411 119627441 -1630089 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 2 1497 225 219 283 9 chr12 119627506 119627612 -1629918 - L1MEf LINE L1 -3326 2993 2859 2 1497 642 226 25 0 chr12 119627818 119627962 -1629568 - B4 SINE B4 -12 280 122 2 1497 386 356 83 7 chr12 119628129 119628429 -1629101 - L1MEf LINE L1 -4052 2363 2041 2 1497 1701 37 11 0 chr12 119628429 119628619 -1628911 - B2_Mm1t SINE B2 0 193 2 2 1497 1212 248 137 22 chr12 119628695 119629054 -1628476 + MTD LTR MaLR 5 404 -15 2 1497 767 265 184 12 chr12 119629135 119629456 -1628074 + MLT1B LTR MaLR 1 376 -14 2 1497 438 297 95 0 chr12 119629577 119629798 -1627732 - L1MEf LINE L1 -4553 1847 1606 2 1497 449 258 6 0 chr12 119629897 119630060 -1627470 + (TG)n Simple_repeat Simple_repeat 1 164 0 2 1497 200 279 10 41 chr12 119630060 119630157 -1627373 + (TATATG)n Simple_repeat Simple_repeat 2 95 0 2 1497 206 208 0 19 chr12 119630157 119630211 -1627319 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1497 331 169 31 31 chr12 119630280 119630408 -1627122 + (TG)n Simple_repeat Simple_repeat 1 128 0 2 1497 308 351 204 23 chr12 119630471 119630643 -1626887 - B4 SINE B4 -1 291 89 2 1497 21 36 0 0 chr12 119630813 119630841 -1626689 + AT_rich Low_complexity Low_complexity 1 28 0 2 1497 22 0 0 0 chr12 119630879 119630901 -1626629 + AT_rich Low_complexity Low_complexity 1 22 0 2 1497 7933 120 44 3 chr12 119630901 119632059 -1625471 - Lx2 LINE L1 -6 6991 5787 2 1497 253 171 113 14 chr12 119632100 119632171 -1625359 - L1MEf LINE L1 -5148 1052 975 2 1497 240 35 0 0 chr12 119632245 119632274 -1625256 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1497 189 116 87 0 chr12 119632295 119632364 -1625166 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 2 1497 503 250 21 0 chr12 119632377 119632473 -1625057 - B1_Mur2 SINE Alu -50 99 2 2 1497 345 295 18 0 chr12 119632724 119632836 -1624694 + Lx9 LINE L1 6655 6768 -876 2 1497 2279 265 90 59 chr12 119633038 119633280 -1624250 + Lx9 LINE L1 6721 6945 -699 2 1497 308 244 556 0 chr12 119633280 119633415 -1624115 - B3 SINE B2 -6 210 1 2 1497 2279 265 90 59 chr12 119633415 119634041 -1623489 + Lx9 LINE L1 6946 7616 -28 2 1497 727 291 199 21 chr12 119634444 119634760 -1622770 + MTC LTR MaLR 6 413 -8 2 1497 1127 219 19 0 chr12 119634828 119635038 -1622492 + B3 SINE B2 3 216 0 2 1497 3135 107 29 24 chr12 119635920 119636371 -1621159 - Lx3B LINE L1 0 6973 6521 2 1497 2244 182 0 72 chr12 119636372 119636815 -1620715 + L1_Mur2 LINE L1 5307 5717 -160 2 1497 266 284 86 0 chr12 119637539 119637620 -1619910 - B1F1 SINE Alu -56 93 6 2 1497 414 303 108 12 chr12 119637690 119637857 -1619673 + B3A SINE B2 3 185 -13 2 1497 433 305 110 0 chr12 119637921 119638039 -1619491 + RSINE1 SINE B4 3 133 -32 2 1497 298 134 15 15 chr12 119638072 119638140 -1619390 + GA-rich Low_complexity Low_complexity 1 68 0 2 1497 637 268 7 0 chr12 119638431 119638584 -1618946 - B3A SINE B2 -30 168 15 2 1497 579 157 0 0 chr12 119638676 119638784 -1618746 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 1497 186 0 28 56 chr12 119638938 119638974 -1618556 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1497 629 315 34 95 chr12 119639470 119639828 -1617702 + ORR1D2 LTR MaLR 30 365 -5 2 1497 369 301 11 11 chr12 119639880 119639974 -1617556 + MLT1H2 LTR MaLR 91 184 -305 2 1497 2135 166 109 45 chr12 119640186 119640654 -1616876 + RLTR28 LTR ERVL 1 498 -26 2 1497 323 360 10 39 chr12 119640684 119640788 -1616742 + MER81 DNA AcHobo 13 113 -1 2 1497 274 293 99 0 chr12 119640790 119640882 -1616648 + MLT1H2 LTR MaLR 459 576 -15 2 1497 397 235 19 38 chr12 119641016 119641122 -1616408 + PB1D10 SINE Alu 1 104 -13 2 1497 234 0 0 0 chr12 119641122 119641148 -1616382 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 2 1497 611 253 79 12 chr12 119641460 119641624 -1615906 - MTEa LTR MaLR 0 379 205 2 1497 215 320 80 0 chr12 119641627 119641702 -1615828 + B4A SINE B4 1 81 -211 2 1497 466 270 74 0 chr12 119641645 119641793 -1615737 + B3A SINE B2 24 182 -16 2 1497 926 141 0 6 chr12 119641797 119642119 -1615411 + (CA)n Simple_repeat Simple_repeat 1 319 0 2 1497 352 228 90 52 chr12 119642125 119642236 -1615294 - MTEa LTR MaLR -253 121 1 2 1497 201 315 37 0 chr12 119642416 119642470 -1615060 + MER91C DNA Tip100 83 138 -2 2 1497 708 152 0 0 chr12 119645576 119645708 -1611822 + GA-rich Low_complexity Low_complexity 3 134 0 2 1497 530 264 73 6 chr12 119645708 119645872 -1611658 + L1M3 LINE L1 4141 4315 -1825 2 1497 1065 266 55 45 chr12 119645871 119646162 -1611368 + RMER1B Other Other 182 475 -591 2 1497 1370 145 185 17 chr12 119646153 119646345 -1611185 + RMER1B Other Other 712 918 -148 2 1497 438 20 0 0 chr12 119646345 119646396 -1611134 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2 1497 1370 145 185 17 chr12 119646396 119646505 -1611025 + RMER1B Other Other 919 1063 -3 2 1497 249 295 0 0 chr12 119646777 119646838 -1610692 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1497 404 335 30 72 chr12 119646843 119647010 -1610520 - RSINE1 SINE B4 0 165 6 2 1497 394 348 12 36 chr12 119647266 119647302 -1610228 + ID_B1 SINE B4 49 211 -13 2 1497 600 275 23 0 chr12 119647302 119647433 -1610097 + B1_Mur2 SINE Alu 3 136 -13 2 1497 1415 77 10 0 chr12 119647505 119647700 -1609830 - RLTR13B4 LTR ERVK 0 803 607 2 1497 310 221 175 7 chr12 119647951 119648091 -1609439 - L1M4 LINE L1 -4643 2459 2279 2 1497 5427 134 36 16 chr12 119648116 119649071 -1608459 + RMER12 LTR ERVK 2 1404 0 2 1497 346 278 182 11 chr12 119649075 119649475 -1608055 - L1M4 LINE L1 -4870 2232 1770 2 1497 317 350 22 72 chr12 119649944 119650166 -1607364 + MLT1C LTR MaLR 59 269 -198 2 1497 1267 249 118 11 chr12 119650175 119650524 -1607006 - MTD LTR MaLR 0 419 34 2 1497 227 277 82 24 chr12 119650529 119650614 -1606916 + MLT1C LTR MaLR 297 386 -119 2 1497 3836 173 148 30 chr12 119651300 119652152 -1605378 - RMER1B Other Other -62 1004 53 2 1497 630 71 0 0 chr12 119652470 119652554 -1604976 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1497 366 23 0 0 chr12 119653487 119653530 -1604000 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1497 219 255 0 0 chr12 119655110 119655161 -1602369 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1497 623 259 138 54 chr12 119655182 119655406 -1602124 - B4A SINE B4 -1 291 49 2 1497 2030 146 134 8 chr12 119655693 119655907 -1601623 - MTC LTR MaLR 0 421 176 2 1497 2832 172 214 10 chr12 119655907 119656519 -1601011 + RMER19A LTR ERVK 1 737 0 2 1497 2030 146 134 8 chr12 119656519 119656678 -1600852 - MTC LTR MaLR -246 175 1 2 1497 489 127 0 0 chr12 119656797 119656876 -1600654 + (CCA)n Simple_repeat Simple_repeat 1 79 0 2 1497 444 326 63 58 chr12 119657097 119657375 -1600155 + Charlie8 DNA MER1_type 48 326 -4 2 1497 277 309 19 33 chr12 119658703 119658821 -1598709 + B1F SINE Alu 11 125 -22 2 1497 202 61 61 0 chr12 119658966 119658999 -1598531 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1497 361 266 66 95 chr12 119659074 119659182 -1598348 + B3A SINE B2 66 164 -34 2 1497 501 17 0 0 chr12 119659182 119659240 -1598290 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1497 369 0 0 0 chr12 119659240 119659280 -1598250 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1497 361 266 66 95 chr12 119659280 119659307 -1598223 + B3A SINE B2 165 197 -1 2 1497 473 184 98 27 chr12 119659351 119659463 -1598067 + RLTR15 LTR ERVK 1 120 -239 2 1497 351 281 130 74 chr12 119659899 119660114 -1597416 + Charlie1 DNA MER1_type 1 227 -2554 2 1497 321 93 0 0 chr12 119660135 119660189 -1597341 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1497 1201 78 0 0 chr12 119660191 119660332 -1597198 - B1_Mus1 SINE Alu -7 141 1 2 1497 630 37 0 0 chr12 119660479 119660560 -1596970 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1497 352 279 135 0 chr12 119660567 119660678 -1596852 - ID_B1 SINE B4 -23 201 76 2 1497 854 178 0 52 chr12 119660941 119661095 -1596435 + B1_Mur2 SINE Alu 2 147 -2 2 1497 360 264 222 11 chr12 119661318 119661580 -1595950 + L1ME4a LINE L1 5595 5911 -213 2 1497 438 255 0 0 chr12 119661605 119661703 -1595827 + L1ME4a LINE L1 5969 6066 -58 2 1497 1013 0 0 0 chr12 119662315 119662456 -1595074 - L1Md_F2 LINE L1 0 6582 6449 2 1497 254 299 331 20 chr12 119663980 119664219 -1593311 + MLT1A LTR MaLR 9 322 -52 2 1497 562 290 169 37 chr12 119664413 119664767 -1592763 + MLT1A1 LTR MaLR 1 401 -7 2 1497 233 312 16 0 chr12 119665315 119665379 -1592151 - ID4 SINE ID -14 69 5 2 1497 1941 171 60 41 chr12 119665408 119665775 -1591755 - ORR1D1 LTR MaLR 0 374 1 2 1497 201 371 37 15 chr12 119665775 119665909 -1591621 + MIR SINE MIR 119 255 -7 2 1497 23 0 0 0 chr12 119665921 119665944 -1591586 + AT_rich Low_complexity Low_complexity 1 23 0 2 1497 689 265 7 13 chr12 119666255 119666404 -1591126 + RSINE1 SINE B4 3 150 -15 2 1497 760 200 7 7 chr12 119666596 119666732 -1590798 + B1_Mur2 SINE Alu 9 144 -5 2 1497 1128 249 51 131 chr12 119666818 119667247 -1590283 + MT2A LTR ERVL 1 395 -138 3 1498 299 297 93 13 chr12 119668820 119668970 -1588560 - RLTR42-int LTR ERVK -4197 1325 1164 3 1498 372 299 7 56 chr12 119669043 119669076 -1588454 - B3A SINE B2 -63 135 1 3 1498 478 241 28 9 chr12 119669076 119669185 -1588345 - B4A SINE B4 -181 111 1 3 1498 458 292 137 0 chr12 119669372 119669533 -1587997 + MER58A DNA MER1_type 40 222 -2 3 1498 825 292 113 39 chr12 119670278 119670641 -1586889 - L1MA7 LINE L1 -455 5836 5447 3 1498 1079 233 37 15 chr12 119670644 119670914 -1586616 + RLTR16 LTR ERVK 154 429 -76 3 1498 1342 161 126 17 chr12 119670895 119671304 -1586226 + RMER17C LTR ERVK 16 439 -519 3 1498 836 196 6 0 chr12 119671508 119671687 -1585843 + CT-rich Low_complexity Low_complexity 1 180 0 3 1498 595 67 11 11 chr12 119671678 119671768 -1585762 + (TTCCC)n Simple_repeat Simple_repeat 2 91 0 3 1498 230 266 0 12 chr12 119671759 119671839 -1585691 + CT-rich Low_complexity Low_complexity 2 80 0 3 1498 1101 16 0 0 chr12 119671843 119671970 -1585560 + (TTTCC)n Simple_repeat Simple_repeat 5 131 0 3 1498 612 0 0 0 chr12 119671985 119672053 -1585477 + (TTTC)n Simple_repeat Simple_repeat 3 70 0 3 1498 502 239 103 34 chr12 119672222 119672509 -1585021 - L1M3 LINE L1 -879 5267 4947 3 1498 487 288 40 0 chr12 119672844 119672969 -1584561 + B1F2 SINE Alu 2 131 -18 3 1498 192 77 0 0 chr12 119672974 119673000 -1584530 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1498 273 308 206 0 chr12 119673002 119673109 -1584421 + RSINE1 SINE B4 19 147 -18 3 1498 21 0 0 0 chr12 119673812 119673833 -1583697 + AT_rich Low_complexity Low_complexity 1 21 0 3 1498 979 278 133 51 chr12 119673853 119674182 -1583348 - L1MB7 LINE L1 -19 6165 5812 3 1498 941 243 19 5 chr12 119674182 119674393 -1583137 - B3 SINE B2 0 216 3 3 1498 979 278 133 51 chr12 119674393 119674745 -1582785 - L1MB7 LINE L1 -373 5811 5428 3 1498 1472 196 102 72 chr12 119674794 119675157 -1582373 + ORR1D1 LTR MaLR 1 374 0 3 1498 21 0 0 0 chr12 119676070 119676091 -1581439 + AT_rich Low_complexity Low_complexity 1 21 0 3 1498 639 289 97 48 chr12 119676860 119677067 -1580463 - ID_B1 SINE B4 -3 221 5 3 1498 545 293 119 25 chr12 119677428 119677705 -1579825 + MER90a LTR ERV1 13 315 -299 3 1498 644 210 76 0 chr12 119677720 119677877 -1579653 - RCHARR1 DNA MER1_type -55 919 751 3 1498 514 222 69 0 chr12 119677873 119678017 -1579513 - RCHARR1 DNA MER1_type -505 469 316 3 1498 683 194 87 26 chr12 119678018 119678203 -1579327 + B3 SINE B2 1 187 -6 3 1498 925 261 92 69 chr12 119678233 119678550 -1578980 - RCHARR1 DNA MER1_type -650 324 1 3 1498 594 219 156 23 chr12 119678554 119678727 -1578803 + B3A SINE B2 1 196 -2 3 1498 594 328 56 4 chr12 119678748 119678981 -1578549 + MER90a LTR ERV1 359 603 -11 3 1498 183 375 38 23 chr12 119679284 119679415 -1578115 - L2a LINE L2 -21 3405 3273 3 1498 205 229 141 14 chr12 119680161 119680232 -1577298 - MIRb SINE MIR -73 195 116 3 1498 491 101 13 0 chr12 119680262 119680341 -1577189 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 1498 204 67 0 0 chr12 119681316 119681346 -1576184 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 3 1498 2348 75 3 56 chr12 119682043 119682380 -1575150 - ORR1A2 LTR MaLR -8 319 1 3 1498 578 303 31 140 chr12 119682380 119682665 -1574865 - RMER15 LTR ERVL -56 519 267 3 1498 237 261 29 115 chr12 119682775 119682796 -1574734 - RMER15 LTR ERVL -475 100 82 3 1498 2563 191 177 4 chr12 119682796 119683317 -1574213 + RMER19C LTR ERVK 1 611 0 3 1498 237 261 29 115 chr12 119683317 119683399 -1574131 - RMER15 LTR ERVL -494 81 6 3 1498 832 240 68 3 chr12 119683722 119683910 -1573620 - Lx6 LINE L1 -566 6894 6754 3 1498 513 69 23 11 chr12 119683910 119683998 -1573532 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 3 1498 832 235 80 0 chr12 119683998 119684060 -1573470 - Lx6 LINE L1 -707 6753 6680 3 1498 264 159 0 0 chr12 119684234 119684275 -1573255 + T-rich Low_complexity Low_complexity 29 69 0 3 1498 1649 37 21 5 chr12 119684275 119684465 -1573065 - B2_Mm1t SINE B2 0 193 1 3 1498 264 159 0 0 chr12 119684465 119684492 -1573038 + T-rich Low_complexity Low_complexity 2 28 0 3 1498 537 291 11 16 chr12 119684538 119684694 -1572836 - Lx7 LINE L1 -809 6835 6622 3 1498 2702 226 91 67 chr12 119684713 119685520 -1572010 + Lx7 LINE L1 5031 5856 -24 3 1498 274 232 72 12 chr12 119685565 119685648 -1571882 + Lx8 LINE L1 6533 6620 -853 3 1498 1745 280 48 22 chr12 119685639 119686220 -1571310 + Lx7 LINE L1 5872 6467 -1229 3 1498 664 250 0 28 chr12 119686526 119686670 -1570860 - RSINE1 SINE B4 -22 143 4 3 1498 22 0 0 0 chr12 119686680 119686702 -1570828 + AT_rich Low_complexity Low_complexity 1 22 0 3 1498 2391 153 55 22 chr12 119686884 119687338 -1570192 - RMER6A LTR ERVK -287 469 1 3 1498 480 284 17 8 chr12 119687338 119687455 -1570075 + ID_B1 SINE B4 107 224 0 3 1498 189 0 0 0 chr12 119688232 119688253 -1569277 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1498 1224 155 70 13 chr12 119688786 119689015 -1568515 - Lx2B LINE L1 -4 6996 6755 3 1498 2352 130 44 0 chr12 119689017 119689379 -1568151 + Lx2B LINE L1 6358 6735 -265 3 1498 240 258 15 75 chr12 119691516 119691583 -1565947 + ID4 SINE ID 2 64 -19 3 1498 255 301 115 50 chr12 119691674 119691856 -1565674 - MIR SINE MIR -11 251 58 3 1498 1689 173 144 6 chr12 119692040 119692181 -1565349 + MTD LTR MaLR 3 142 -277 3 1498 369 0 0 0 chr12 119692181 119692222 -1565308 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1498 1689 173 144 6 chr12 119692222 119692434 -1565096 + MTD LTR MaLR 143 404 -15 3 1498 837 238 69 0 chr12 119693004 119693164 -1564366 + B3A SINE B2 2 172 -26 3 1498 261 261 30 89 chr12 119693554 119693655 -1563875 - B1F1 SINE Alu -41 108 14 3 1498 243 0 0 0 chr12 119695749 119695776 -1561754 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1498 387 0 0 0 chr12 119695933 119695976 -1561554 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1498 30 45 0 0 chr12 119697981 119698025 -1559505 + AT_rich Low_complexity Low_complexity 1 44 0 3 1498 237 311 87 0 chr12 119701166 119701269 -1556261 - L1ME2 LINE L1 -116 6048 5937 3 1498 547 256 8 47 chr12 119701498 119701625 -1555905 + RSINE1 SINE B4 44 165 0 3 1498 477 244 79 31 chr12 119701776 119701903 -1555627 + B1F2 SINE Alu 11 143 -6 3 1498 311 238 167 0 chr12 119701967 119702051 -1555479 + PB1D10 SINE Alu 5 102 -15 3 1498 614 278 0 20 chr12 119702093 119702221 -1555309 + B3A SINE B2 1 125 -73 3 1498 1475 227 112 29 chr12 119702221 119702606 -1554924 - MTD LTR MaLR 0 419 3 3 1498 245 257 42 28 chr12 119702607 119702679 -1554851 + B3A SINE B2 123 195 -3 3 1498 328 329 195 19 chr12 119702883 119703140 -1554390 + ORR1D2 LTR MaLR 5 306 -64 3 1498 341 222 25 0 chr12 119703137 119703218 -1554312 + MER5A1 DNA MER1_type 5 87 -79 3 1498 313 300 71 26 chr12 119704256 119704410 -1553120 - MER5C DNA MER1_type -125 188 28 3 1498 841 224 34 6 chr12 119705443 119705618 -1551912 - B3A SINE B2 -18 180 1 3 1498 262 270 79 10 chr12 119706327 119706428 -1551102 - MER5A DNA MER1_type -78 111 4 3 1498 186 133 0 0 chr12 119706518 119706548 -1550982 + (GGA)n Simple_repeat Simple_repeat 3 32 0 3 1498 202 206 0 0 chr12 119706612 119706646 -1550884 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1498 734 267 68 145 chr12 119707045 119707623 -1549907 + RMER15 LTR ERVL 41 573 -2 3 1498 22 35 0 0 chr12 119707878 119707907 -1549623 + AT_rich Low_complexity Low_complexity 1 29 0 3 1498 293 256 169 42 chr12 119707968 119708225 -1549305 + L1M5 LINE L1 5428 5722 -2160 3 1498 25 0 0 0 chr12 119708496 119708521 -1549009 + AT_rich Low_complexity Low_complexity 1 25 0 3 1498 1580 62 0 40 chr12 119708525 119708727 -1548803 + B2_Mm2 SINE B2 2 195 0 3 1498 829 230 5 84 chr12 119708824 119709038 -1548492 + B3A SINE B2 1 197 -1 3 1498 629 186 22 65 chr12 119709065 119709203 -1548327 + B1_Mur1 SINE Alu 17 148 -1 3 1498 24 0 0 0 chr12 119709618 119709642 -1547888 + AT_rich Low_complexity Low_complexity 1 24 0 3 1498 992 229 28 19 chr12 119710154 119710368 -1547162 - B3 SINE B2 0 216 1 3 1498 465 110 0 0 chr12 119710484 119710557 -1546973 + (TTCA)n Simple_repeat Simple_repeat 3 75 0 3 1498 221 221 15 0 chr12 119710992 119711060 -1546470 + GA-rich Low_complexity Low_complexity 2 70 0 3 1498 210 71 0 0 chr12 119711119 119711147 -1546383 + (CCCCCT)n Simple_repeat Simple_repeat 6 33 0 3 1498 508 262 44 22 chr12 119712005 119712188 -1545342 - L1MB3 LINE L1 -83 6100 5914 3 1498 348 200 68 17 chr12 119714574 119714691 -1542839 - L1MA8 LINE L1 -144 6147 6025 3 1498 468 264 0 36 chr12 119714705 119714815 -1542715 + B3 SINE B2 1 106 -110 3 1498 4012 192 73 6 chr12 119715062 119715842 -1541688 - RMER1A Other Other -1 1029 198 3 1498 1559 63 16 10 chr12 119716667 119716860 -1540670 + B2_Mm2 SINE B2 2 195 0 3 1498 278 369 55 18 chr12 119716868 119717031 -1540499 - L4 LINE RTE -929 1100 932 3 1498 432 104 0 0 chr12 119717417 119717484 -1540046 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3 1498 27 0 0 0 chr12 119717873 119717900 -1539630 + AT_rich Low_complexity Low_complexity 1 27 0 3 1498 899 239 28 14 chr12 119717902 119718114 -1539416 - B3 SINE B2 0 216 2 3 1498 212 371 14 41 chr12 119719036 119719174 -1538356 + MIRb SINE MIR 59 187 -89 3 1498 3094 43 0 0 chr12 119719246 119719594 -1537936 - L1_Mus1 LINE L1 0 6567 6220 3 1498 1776 104 180 20 chr12 119719633 119719938 -1537592 - ORR1B1 LTR MaLR 0 394 41 3 1498 207 0 0 0 chr12 119720582 119720605 -1536925 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1498 261 253 11 57 chr12 119721312 119721400 -1536130 - L2a LINE L2 -10 3416 3333 3 1498 395 282 137 0 chr12 119721404 119721535 -1535995 + B1F SINE Alu 1 149 0 3 1498 417 341 148 13 chr12 119721940 119722169 -1535361 - Tigger7 DNA MER2_type -2208 283 24 3 1498 474 18 0 0 chr12 119722732 119722787 -1534743 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1498 2903 12 0 0 chr12 119723343 119723668 -1533862 + L1Md_T LINE L1 6257 6581 -1 3 1498 367 309 167 35 chr12 119723718 119724036 -1533494 - MLT1C LTR MaLR -41 426 67 4 1498 294 143 0 0 chr12 119724071 119724120 -1533410 + (TATG)n Simple_repeat Simple_repeat 4 52 0 4 1498 357 280 41 41 chr12 119724393 119724516 -1533014 - B4 SINE B4 -169 123 1 4 1498 339 290 18 27 chr12 119728629 119728739 -1528791 - B1F2 SINE Alu -1 148 40 4 1498 1935 149 41 69 chr12 119728963 119729352 -1528178 - ORR1C1 LTR MaLR 0 378 1 4 1498 261 0 0 0 chr12 119729767 119729796 -1527734 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1498 302 0 26 0 chr12 119730257 119730295 -1527235 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1498 2531 269 102 15 chr12 119730296 119731301 -1526229 + L1_Mur3 LINE L1 3237 4328 -1552 4 1498 786 306 18 11 chr12 119731297 119731575 -1525955 + Lx8 LINE L1 6978 7257 -216 4 1498 459 155 0 0 chr12 119731634 119731718 -1525812 + A-rich Low_complexity Low_complexity 2 85 0 4 1498 541 315 11 11 chr12 119732601 119732781 -1524749 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 4 1498 238 236 66 6 chr12 119732789 119732955 -1524575 + (TATG)n Simple_repeat Simple_repeat 4 179 0 4 1498 287 293 0 22 chr12 119732969 119733147 -1524383 + (TG)n Simple_repeat Simple_repeat 1 174 0 4 1498 791 272 8 93 chr12 119733147 119733415 -1524115 - B4 SINE B4 0 292 48 4 1498 660 299 40 50 chr12 119734001 119734279 -1523251 - RMER15 LTR ERVL -1 574 300 4 1498 245 188 67 45 chr12 119734316 119734405 -1523125 - RMER15 LTR ERVL -424 151 61 4 1498 920 172 83 29 chr12 119734601 119734805 -1522725 - B3 SINE B2 -1 215 1 4 1498 3789 191 62 126 chr12 119735149 119736106 -1521424 - RMER1B Other Other -168 898 4 4 1498 27 0 0 0 chr12 119736113 119736140 -1521390 + AT_rich Low_complexity Low_complexity 1 27 0 4 1498 286 295 0 0 chr12 119736181 119736265 -1521265 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 4 1498 191 36 36 0 chr12 119736265 119736293 -1521237 + (TATG)n Simple_repeat Simple_repeat 1 29 0 4 1498 214 333 19 51 chr12 119736293 119736368 -1521162 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 4 1498 655 201 180 53 chr12 119736438 119736627 -1520903 + B3 SINE B2 4 216 0 4 1498 1191 15 0 0 chr12 119736761 119736898 -1520632 + (GGGAGA)n Simple_repeat Simple_repeat 4 140 0 4 1498 396 0 0 0 chr12 119737114 119737158 -1520372 + (TTTAG)n Simple_repeat Simple_repeat 2 45 0 4 1498 477 266 63 28 chr12 119737351 119737494 -1520036 + ID_B1 SINE B4 77 224 0 4 1498 180 0 0 0 chr12 119737604 119737624 -1519906 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1498 192 77 0 0 chr12 119738214 119738240 -1519290 + (TTC)n Simple_repeat Simple_repeat 2 27 0 4 1498 642 252 0 0 chr12 119739713 119739836 -1517694 + RSINE1 SINE B4 3 125 -40 4 1498 306 0 0 0 chr12 119739837 119739871 -1517659 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1498 489 316 25 43 chr12 119740713 119740948 -1516582 - MIR SINE MIR -11 251 21 4 1498 248 131 0 21 chr12 119741224 119741271 -1516259 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1498 857 254 137 4 chr12 119741378 119741627 -1515903 - B4A SINE B4 -1 291 10 4 1498 252 245 64 64 chr12 119741734 119741843 -1515687 + MLT2C2 LTR ERVL 442 550 -9 4 1498 8597 21 5 0 chr12 119742184 119743400 -1514130 - L1Md_T LINE L1 0 6582 5359 4 1498 953 28 0 0 chr12 119743400 119743507 -1514023 - U6 snRNA snRNA 0 107 1 4 1498 245 283 0 0 chr12 119743712 119743772 -1513758 + tRNA-Ala-GCY_ tRNA tRNA 9 68 -7 4 1498 608 271 6 37 chr12 119744405 119744566 -1512964 + RSINE1 SINE B4 2 157 -8 4 1498 225 314 11 44 chr12 119744629 119744719 -1512811 + B4A SINE B4 1 87 -205 4 1498 195 100 0 0 chr12 119744747 119744777 -1512753 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 4 1498 265 323 119 75 chr12 119744780 119744850 -1512680 + B4A SINE B4 151 224 -68 4 1498 1369 77 22 0 chr12 119744850 119745032 -1512498 + B2_Mm2 SINE B2 2 187 -8 4 1498 265 323 119 75 chr12 119745032 119745095 -1512435 + B4A SINE B4 225 290 -2 4 1498 237 349 90 45 chr12 119745178 119745289 -1512241 + PB1D10 SINE Alu 2 117 0 4 1498 302 235 73 0 chr12 119745746 119745814 -1511716 + ID SINE ID 2 74 -150 4 1498 830 313 44 6 chr12 119745881 119746160 -1511370 + B4A SINE B4 4 292 0 4 1498 211 245 19 0 chr12 119746162 119746215 -1511315 + (CATA)n Simple_repeat Simple_repeat 3 56 0 4 1498 247 266 57 56 chr12 119748335 119748446 -1509084 - MIRb SINE MIR -45 217 114 4 1498 2178 149 61 30 chr12 119748565 119748993 -1508537 + RMER10A LTR ERVL 1 441 -1 4 1498 222 208 0 0 chr12 119748994 119749042 -1508488 + CT-rich Low_complexity Low_complexity 4 51 0 4 1498 499 112 22 0 chr12 119749093 119749182 -1508348 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 4 1498 204 156 22 0 chr12 119750333 119750378 -1507152 + T-rich Low_complexity Low_complexity 4 49 0 4 1498 413 284 69 34 chr12 119750632 119750807 -1506723 - ID_B1 SINE B4 -23 201 21 4 1498 424 264 107 0 chr12 119750997 119751118 -1506412 + RSINE1 SINE B4 1 134 -31 4 1498 195 42 0 0 chr12 119751151 119751175 -1506355 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1498 375 23 0 0 chr12 119751175 119751218 -1506312 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1498 399 132 0 0 chr12 119751409 119751477 -1506053 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1498 1422 246 129 0 chr12 119751634 119752052 -1505478 - Lx8 LINE L1 0 7473 7002 4 1498 2463 147 15 3 chr12 119752499 119752888 -1504642 + ORR1B1 LTR MaLR 1 394 0 4 1498 876 264 47 0 chr12 119753687 119753899 -1503631 + ID_B1 SINE B4 1 222 -2 4 1498 791 289 68 10 chr12 119754370 119754678 -1502852 - MLT1A0 LTR MaLR -37 328 3 4 1498 1725 234 25 10 chr12 119755145 119755538 -1501992 + MTD LTR MaLR 20 418 -1 4 1498 236 256 171 0 chr12 119755884 119755966 -1501564 - MTEa LTR MaLR -50 329 234 4 1498 735 232 2 14 chr12 119756146 119756318 -1501212 + B3 SINE B2 2 164 -31 4 1498 348 64 0 0 chr12 119756318 119756365 -1501165 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 4 1498 714 243 68 0 chr12 119756580 119756757 -1500773 + ID_B1 SINE B4 8 196 -28 4 1498 32 0 0 0 chr12 119757317 119757349 -1500181 + AT_rich Low_complexity Low_complexity 1 32 0 4 1498 723 144 11 39 chr12 119757703 119757883 -1499647 + GA-rich Low_complexity Low_complexity 3 177 0 4 1498 459 0 0 0 chr12 119758035 119758086 -1499444 + (CTG)n Simple_repeat Simple_repeat 2 52 0 4 1498 648 0 0 0 chr12 119758104 119758176 -1499354 + (CCA)n Simple_repeat Simple_repeat 1 72 0 4 1498 252 242 58 48 chr12 119759324 119759428 -1498102 - MIR SINE MIR -124 138 34 4 1498 222 37 0 0 chr12 119760237 119760264 -1497266 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1498 315 0 0 0 chr12 119760819 119760854 -1496676 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1498 597 0 65 0 chr12 119761365 119761458 -1496072 + (TC)n Simple_repeat Simple_repeat 1 99 0 4 1498 1105 59 0 0 chr12 119761658 119761793 -1495737 - B1_Mus1 SINE Alu -13 135 1 4 1498 603 275 68 6 chr12 119761855 119762016 -1495514 - B3A SINE B2 -27 171 1 4 1498 225 0 0 0 chr12 119762628 119762653 -1494877 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1498 1202 48 0 0 chr12 119762653 119762799 -1494731 - B1_Mus2 SINE Alu 0 147 2 4 1498 180 0 0 0 chr12 119763576 119763596 -1493934 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1498 303 297 33 0 chr12 119764179 119764270 -1493260 - ID_B1 SINE B4 -8 216 123 4 1498 256 250 197 8 chr12 119764270 119764290 -1493240 - B1F2 SINE Alu -2 121 9 4 1498 935 164 204 6 chr12 119766312 119766484 -1491046 - B3 SINE B2 -10 206 1 4 1498 210 71 0 0 chr12 119769450 119769478 -1488052 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1498 342 0 0 0 chr12 119769603 119769641 -1487889 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1498 201 74 0 0 chr12 119770514 119770541 -1486989 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1498 778 147 23 23 chr12 119770541 119770673 -1486857 - B1_Mur3 SINE Alu -9 140 9 4 1498 1284 173 176 31 chr12 119770673 119770824 -1486706 + RMER17C LTR ERVK 1 158 -252 4 1498 207 0 0 0 chr12 119770824 119770847 -1486683 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 4 1498 1284 173 176 31 chr12 119770847 119771053 -1486477 + RMER17C LTR ERVK 159 409 -1 4 1498 388 148 20 137 chr12 119771053 119771071 -1486459 - PB1D9 SINE Alu -103 17 2 4 1498 28 0 0 0 chr12 119771083 119771111 -1486419 + AT_rich Low_complexity Low_complexity 1 28 0 4 1498 3689 167 113 37 chr12 119771709 119772544 -1484986 - RMER19B LTR ERVK -4 898 1 4 1498 428 100 29 0 chr12 119772544 119772614 -1484916 + (GGGAGA)n Simple_repeat Simple_repeat 2 73 0 4 1498 297 299 0 0 chr12 119772616 119772683 -1484847 - RSINE1 SINE B4 -44 121 55 4 1498 1980 122 83 0 chr12 119774462 119774764 -1482766 + ORR1A2 LTR MaLR 1 327 0 4 1498 1352 175 76 7 chr12 119775056 119775333 -1482197 - Lx9 LINE L1 -6 7638 7343 4 1498 292 114 0 0 chr12 119775333 119775377 -1482153 + MTEb LTR MaLR 302 345 -34 4 1498 800 307 0 0 chr12 119775639 119775828 -1481702 + B3 SINE B2 1 189 -27 4 1498 1175 96 55 27 chr12 119776103 119776286 -1481244 + B2_Mm2 SINE B2 1 188 -7 4 1498 973 239 33 9 chr12 119776296 119776507 -1481023 + B3 SINE B2 1 216 0 4 1498 342 0 0 0 chr12 119776543 119776581 -1480949 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1498 252 293 91 41 chr12 119776585 119776706 -1480824 + MER94 DNA AcHobo 2 128 -6 4 1498 410 328 23 17 chr12 119776830 119777007 -1480523 + MER5B DNA MER1_type 1 178 0 4 1498 429 261 91 86 chr12 119777128 119777325 -1480205 - B3A SINE B2 0 198 1 4 1498 44 56 0 0 chr12 119777389 119777461 -1480069 + AT_rich Low_complexity Low_complexity 1 72 0 5 1498 1651 172 86 47 chr12 119777471 119777831 -1479699 - ORR1D1 LTR MaLR 0 374 1 5 1498 213 39 0 0 chr12 119778153 119778179 -1479351 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1498 730 278 39 11 chr12 119778288 119778466 -1479064 - ID_B1 SINE B4 -40 184 2 5 1498 318 50 0 0 chr12 119779645 119779685 -1477845 + (TCC)n Simple_repeat Simple_repeat 3 42 0 5 1498 198 0 0 0 chr12 119781063 119781085 -1476445 + (CAGAGA)n Simple_repeat Simple_repeat 3 24 0 5 1498 1090 124 95 11 chr12 119781297 119781476 -1476054 - B2_Mm2 SINE B2 0 195 2 5 1498 724 217 157 125 chr12 119781674 119781696 -1475834 - RMER4B LTR ERVK -5 461 444 5 1498 2430 186 12 205 chr12 119781696 119782453 -1475077 + RMER19C LTR ERVK 1 611 0 5 1498 740 215 177 39 chr12 119782453 119782782 -1474748 - RMER4B LTR ERVK -23 443 43 5 1498 1685 253 32 25 chr12 119783052 119783457 -1474073 + MTD LTR MaLR 12 419 0 5 1498 438 20 0 0 chr12 119783777 119783828 -1473702 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1498 440 298 0 69 chr12 119783845 119783975 -1473555 - RSINE1 SINE B4 -43 122 2 5 1498 731 299 34 10 chr12 119784196 119784402 -1473128 - ID_B1 SINE B4 -10 214 4 5 1498 1841 186 23 67 chr12 119784523 119784909 -1472621 + ORR1D1 LTR MaLR 6 374 0 5 1498 728 283 0 0 chr12 119784984 119785122 -1472408 + RSINE1 SINE B4 10 147 -18 5 1498 304 299 10 10 chr12 119785478 119785576 -1471954 - ID_B1 SINE B4 -1 223 126 5 1498 910 154 0 0 chr12 119785656 119785786 -1471744 - B1_Mus1 SINE Alu -18 130 1 5 1498 657 264 14 0 chr12 119785813 119785957 -1471573 - RSINE1 SINE B4 -14 151 6 5 1498 331 159 127 0 chr12 119786521 119786584 -1470946 + RMER17B LTR ERVK 177 247 -711 5 1498 290 314 91 68 chr12 119786813 119787032 -1470498 + ORR1E LTR MaLR 1 224 -135 5 1498 262 203 34 0 chr12 119787427 119787486 -1470044 + Lx8 LINE L1 7154 7214 -259 5 1498 473 145 35 22 chr12 119787486 119787718 -1469812 + (TG)n Simple_repeat Simple_repeat 1 234 0 5 1498 561 99 65 13 chr12 119787739 119787893 -1469637 + (TG)n Simple_repeat Simple_repeat 2 163 0 5 1498 280 167 18 18 chr12 119787895 119787950 -1469580 + Lx8 LINE L1 7226 7280 -193 5 1498 227 315 68 0 chr12 119788074 119788147 -1469383 - ID4 SINE ID -1 82 5 5 1498 1307 72 0 6 chr12 119788442 119788623 -1468907 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1498 486 49 0 0 chr12 119788623 119788684 -1468846 + (TCC)n Simple_repeat Simple_repeat 3 63 0 5 1498 1174 96 0 0 chr12 119788691 119788837 -1468693 - B1_Mm SINE Alu 0 147 2 5 1498 417 39 0 0 chr12 119788906 119788957 -1468573 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1498 25 0 0 0 chr12 119789190 119789215 -1468315 + AT_rich Low_complexity Low_complexity 1 25 0 5 1498 282 216 118 26 chr12 119789280 119789356 -1468174 - RLTR14 LTR ERV1 -2 380 298 5 1498 800 267 31 20 chr12 119789669 119789864 -1467666 - B3A SINE B2 0 198 2 5 1498 838 173 58 0 chr12 119790052 119790191 -1467339 - B1_Mur2 SINE Alu -1 148 2 5 1498 335 318 108 8 chr12 119792508 119792638 -1464892 - B1F2 SINE Alu -6 143 1 5 1498 1727 27 0 0 chr12 119793351 119793538 -1463992 + B2_Mm1t SINE B2 1 187 -6 5 1498 1445 204 53 44 chr12 119793836 119794015 -1463515 + MTE2b LTR MaLR 59 252 -127 5 1498 1649 52 5 0 chr12 119794015 119794206 -1463324 - B2_Mm1a SINE B2 -1 192 1 5 1498 1445 204 53 44 chr12 119794206 119794344 -1463186 + MTE2b LTR MaLR 253 378 -1 5 1498 1711 218 21 27 chr12 119794667 119795039 -1462491 - ORR1D2 LTR MaLR 0 370 1 5 1498 180 0 0 0 chr12 119795715 119795735 -1461795 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1498 256 183 366 0 chr12 119797198 119797291 -1460239 - MLT1D LTR MaLR -293 212 86 5 1498 202 123 0 84 chr12 119797488 119797559 -1459971 + CT-rich Low_complexity Low_complexity 3 67 0 5 1498 823 209 7 39 chr12 119797772 119797926 -1459604 - B1_Mur2 SINE Alu 0 149 1 5 1498 236 286 140 18 chr12 119799088 119799202 -1458328 - MER5A1 DNA MER1_type -38 128 1 5 1498 393 22 0 0 chr12 119799457 119799503 -1458027 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1498 394 328 14 55 chr12 119799661 119799806 -1457724 + ID_B1 SINE B4 65 203 -21 5 187 672 211 24 0 chr12 119799687 119799810 -1457720 + B1_Mur3 SINE Alu 5 130 -19 5 1499 225 0 0 0 chr12 119799815 119799840 -1457690 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1499 355 309 129 27 chr12 119799991 119800247 -1457283 - L1MB3 LINE L1 -219 5964 5683 5 1499 240 273 33 22 chr12 119800808 119800898 -1456632 - MIRb SINE MIR -137 131 41 5 1499 268 264 107 0 chr12 119804588 119804671 -1452859 - ID4_ SINE ID -55 97 8 5 1499 489 290 105 12 chr12 119806708 119806879 -1450651 - MER110 LTR ERV1 -129 362 176 5 1499 1663 165 53 80 chr12 119807179 119807656 -1449874 + RLTR41 LTR ERV1 18 443 -3 5 1499 248 314 99 32 chr12 119808842 119809007 -1448523 - MIR SINE MIR -74 194 14 5 1499 196 233 47 0 chr12 119809140 119809183 -1448347 + L2a LINE L2 3344 3388 -38 5 1499 297 0 0 0 chr12 119809216 119809249 -1448281 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1499 1367 99 14 5 chr12 119809848 119810062 -1447468 - L1_Mus3 LINE L1 -20 6618 6403 5 1499 844 280 82 20 chr12 119810285 119810529 -1447001 + B4A SINE B4 1 259 -33 5 1499 930 73 2 3 chr12 119810681 119810821 -1446709 - B1_Mus1 SINE Alu -11 139 1 5 1499 476 287 63 6 chr12 119810821 119810865 -1446665 - B4 SINE B4 -202 90 38 5 1499 346 204 0 20 chr12 119810912 119810992 -1446538 + GA-rich Low_complexity Low_complexity 3 82 0 5 1499 1175 102 6 0 chr12 119810992 119811169 -1446361 + (GAA)n Simple_repeat Simple_repeat 1 178 0 5 1499 346 204 0 20 chr12 119811169 119811188 -1446342 + polypurine Low_complexity Low_complexity 83 100 0 5 1499 217 196 0 0 chr12 119812365 119812411 -1445119 + L4 LINE RTE 1983 2028 -1 5 1499 288 331 62 0 chr12 119812780 119812925 -1444605 + Charlie4 DNA MER1_type 1803 1956 -5 5 1499 198 318 114 0 chr12 119812973 119813061 -1444469 + MIRm SINE MIR 178 275 -1 5 1499 307 235 148 70 chr12 119813182 119813196 -1444334 - B4A SINE B4 -153 139 2 5 1499 680 211 0 0 chr12 119813196 119813310 -1444220 - B3A SINE B2 -83 115 2 5 1499 21 0 0 0 chr12 119813310 119813331 -1444199 + AT_rich Low_complexity Low_complexity 1 21 0 5 1499 551 253 81 29 chr12 119813789 119813980 -1443550 - MLT1D LTR MaLR 0 627 365 5 1499 189 74 0 0 chr12 119813980 119814007 -1443523 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 1499 496 330 176 64 chr12 119814007 119814378 -1443152 - MLT1D LTR MaLR -213 414 2 5 1499 23 0 0 0 chr12 119814871 119814894 -1442636 + AT_rich Low_complexity Low_complexity 1 23 0 5 1499 429 70 0 0 chr12 119815833 119815890 -1441640 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1499 484 336 8 0 chr12 119815890 119816012 -1441518 - RSINE1 SINE B4 -40 125 3 5 1499 501 131 0 0 chr12 119816024 119816131 -1441399 + (GA)n Simple_repeat Simple_repeat 1 107 0 5 1499 244 311 0 0 chr12 119816133 119816194 -1441336 - ID_B1 SINE B4 -43 181 121 5 1499 251 186 33 33 chr12 119818018 119818079 -1439451 + MamRep434 DNA TcMar 99 159 -267 5 1499 207 302 0 0 chr12 119818081 119818134 -1439396 + G-rich Low_complexity Low_complexity 6 58 0 5 1499 281 257 0 137 chr12 119818155 119818272 -1439258 + MamRep434 DNA TcMar 179 279 -147 5 1499 742 169 232 34 chr12 119819285 119819462 -1438068 + B3 SINE B2 1 212 -4 5 1499 778 247 71 0 chr12 119819604 119819774 -1437756 - B3A SINE B2 -15 183 2 5 1499 263 281 61 0 chr12 119819812 119819894 -1437636 - L1ME1 LINE L1 -18 6161 6075 5 1499 2781 170 47 30 chr12 119819939 119820644 -1436886 - RMER1B Other Other -4 1062 332 5 1499 802 0 0 20 chr12 119820865 119820965 -1436565 + (CAAAC)n Simple_repeat Simple_repeat 2 99 0 5 1499 301 342 13 0 chr12 119821343 119821422 -1436108 + PB1D7 SINE Alu 1 80 -40 5 1499 239 269 14 29 chr12 119821366 119821435 -1436095 + MT2B2 LTR ERVL 180 247 -337 5 1499 297 0 0 0 chr12 119822516 119822549 -1434981 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1499 892 215 130 5 chr12 119825359 119825551 -1431979 - B3 SINE B2 0 216 1 5 1499 248 140 40 0 chr12 119828059 119828109 -1429421 + GA-rich Low_complexity Low_complexity 3 54 0 5 1499 442 280 99 57 chr12 119828867 119829079 -1428451 + ID_B1 SINE B4 3 223 -1 5 1499 1323 185 19 3 chr12 119829655 119829892 -1427638 + RMER10A LTR ERVL 1 224 -174 5 1499 793 29 9 9 chr12 119829892 119829997 -1427533 + (TC)n Simple_repeat Simple_repeat 2 106 0 5 1499 1112 240 157 49 chr12 119829997 119830109 -1427421 + RMER10A LTR ERVL 225 388 -10 5 1499 1136 127 38 11 chr12 119830164 119830347 -1427183 - RLTR24 LTR ERV1 -341 188 1 5 1499 189 0 0 0 chr12 119830487 119830508 -1427022 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 1499 1097 119 0 24 chr12 119830508 119830672 -1426858 - B2_Mm2 SINE B2 -34 161 2 5 1499 813 222 75 5 chr12 119830938 119831124 -1426406 - B3 SINE B2 -17 199 1 5 1499 641 202 30 75 chr12 119832052 119832186 -1425344 - B1_Mur1 SINE Alu -6 143 16 5 1499 642 249 104 7 chr12 119832374 119832670 -1424860 - L1MA4 LINE L1 -281 6016 5713 5 1499 1665 157 7 20 chr12 119832907 119833199 -1424331 + RMER4A LTR ERVK 1 288 -178 5 1499 211 83 28 0 chr12 119833288 119833324 -1424206 + MIRm SINE MIR 104 140 -136 5 1499 231 61 0 0 chr12 119835273 119835306 -1422224 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1499 198 0 0 0 chr12 119835351 119835373 -1422157 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1499 219 45 43 22 chr12 119835442 119835488 -1422042 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 5 1499 185 379 0 15 chr12 119835488 119835555 -1421975 - L2b LINE L2 -20 3355 3290 5 1499 589 249 70 35 chr12 119836280 119836480 -1421050 + ID_B1 SINE B4 2 208 -16 6 1499 531 138 0 0 chr12 119836666 119836753 -1420777 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1499 531 253 126 15 chr12 119838277 119838589 -1418941 - MTD LTR MaLR -4 415 40 6 1499 9249 138 110 11 chr12 119838913 119840751 -1416779 - RLTR42-int LTR ERVK -232 5290 3272 6 1499 1656 140 52 100 chr12 119840758 119841107 -1416423 + ORR1B1 LTR MaLR 41 372 -22 6 1499 3620 160 44 1 chr12 119841644 119842328 -1415202 - RLTR42-int LTR ERVK -2245 3277 2565 6 1499 482 79 22 22 chr12 119842328 119842419 -1415111 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1499 2640 143 16 30 chr12 119842450 119842876 -1414654 - RLTR20B2 LTR ERVK -140 420 1 6 1499 2866 212 96 43 chr12 119842882 119843618 -1413912 - RLTR42-int LTR ERVK -4670 852 75 6 1499 3494 171 178 18 chr12 119843618 119844075 -1413455 - RMER17B LTR ERVK 0 958 432 6 1499 441 0 0 0 chr12 119844075 119844124 -1413406 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1499 3494 171 178 18 chr12 119844124 119844492 -1413038 - RMER17B LTR ERVK -527 431 1 6 1499 2866 212 96 43 chr12 119844492 119844564 -1412966 - RLTR42-int LTR ERVK -5448 74 1 6 1499 690 194 225 5 chr12 119844564 119844750 -1412780 - RLTR42 LTR ERVK 0 239 13 6 1499 721 236 4 8 chr12 119844865 119845119 -1412411 + GA-rich Low_complexity Low_complexity 1 253 0 6 1499 278 360 42 12 chr12 119845129 119845295 -1412235 + MLT1F-int LTR MaLR 176 346 -1143 6 1499 200 222 0 0 chr12 119845575 119845611 -1411919 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 6 1499 40 0 0 0 chr12 119846012 119846052 -1411478 + AT_rich Low_complexity Low_complexity 1 40 0 6 1499 279 0 0 0 chr12 119846283 119846314 -1411216 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1499 22 0 0 0 chr12 119846449 119846471 -1411059 + AT_rich Low_complexity Low_complexity 1 22 0 6 1499 2022 160 64 6 chr12 119846631 119846977 -1410553 - MTC LTR MaLR -8 413 48 6 1499 802 183 155 5 chr12 119847018 119847205 -1410325 - B3 SINE B2 0 216 2 6 1499 384 129 27 54 chr12 119847206 119847280 -1410250 - MTC LTR MaLR -340 81 10 6 1499 629 302 91 58 chr12 119848356 119848686 -1408844 - MTEa LTR MaLR 0 379 39 6 1499 4514 121 71 1 chr12 119848693 119849380 -1408150 + RMER19A LTR ERVK 3 737 0 6 1499 438 199 195 32 chr12 119850333 119850489 -1407041 + B3 SINE B2 15 186 -9 6 1499 668 180 72 0 chr12 119850733 119850844 -1406686 - B1_Mur3 SINE Alu -19 130 12 6 1499 366 327 37 0 chr12 119851304 119851411 -1406119 - MIRm SINE MIR 0 276 166 6 1499 21 0 0 0 chr12 119851516 119851537 -1405993 + AT_rich Low_complexity Low_complexity 1 21 0 6 1499 603 279 7 35 chr12 119851547 119851692 -1405838 + ID_B1 SINE B4 81 221 -3 6 1499 282 268 85 0 chr12 119851887 119851942 -1405588 + RSINE1 SINE B4 77 131 -34 6 1499 237 33 0 0 chr12 119851942 119851972 -1405558 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 6 1499 282 268 85 0 chr12 119851972 119851998 -1405532 + RSINE1 SINE B4 132 164 -1 6 1499 849 301 39 90 chr12 119852005 119852315 -1405215 + MTE2b LTR MaLR 38 331 -48 6 1499 443 274 56 16 chr12 119852316 119852442 -1405088 - RSINE1 SINE B4 -32 133 3 6 1499 780 299 16 0 chr12 119853601 119853788 -1403742 + ID_B1 SINE B4 9 198 -26 6 1499 25 65 0 0 chr12 119853819 119853865 -1403665 + AT_rich Low_complexity Low_complexity 1 46 0 6 1499 279 233 256 8 chr12 119853915 119854032 -1403498 + MLT2D LTR ERVL 2 147 -267 6 1499 540 143 19 0 chr12 119854041 119854146 -1403384 - RMER1B Other Other -4 1062 956 6 1499 1310 151 5 0 chr12 119854146 119854351 -1403179 + MTC LTR MaLR 216 421 0 6 1499 510 273 44 22 chr12 119854352 119854532 -1402998 + MT2A LTR ERVL 350 533 0 6 1499 259 260 71 89 chr12 119854532 119854677 -1402853 + MLT2D LTR ERVL 401 542 -17 6 1499 491 303 14 2 chr12 119854672 119854812 -1402718 - B3A SINE B2 -63 153 3 6 1499 1271 85 5 50 chr12 119854901 119855099 -1402431 + B2_Mm2 SINE B2 2 190 -5 6 1499 641 329 37 37 chr12 119855286 119855504 -1402026 + Tigger7 DNA MER2_type 35 252 -2239 6 1499 569 284 55 51 chr12 119855506 119855743 -1401787 + Tigger7 DNA MER2_type 2254 2491 0 6 1499 2399 38 3 0 chr12 119856063 119856354 -1401176 + L1Md_A LINE L1 6291 6582 0 6 1499 233 119 0 23 chr12 119856402 119856445 -1401085 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 6 1499 689 142 127 64 chr12 119856460 119856633 -1400897 - B2_Mm2 SINE B2 -10 185 2 6 1499 855 286 49 14 chr12 119856652 119856936 -1400594 - MLT-int LTR MaLR -5 1730 1437 6 1499 351 113 0 0 chr12 119858200 119858262 -1399268 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 1499 315 0 0 0 chr12 119858907 119858942 -1398588 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1499 313 269 63 56 chr12 119861935 119862061 -1395469 - MER96B DNA hAT -182 235 109 6 1499 496 256 135 0 chr12 119862108 119862241 -1395289 + ID_B1 SINE B4 71 221 -3 6 1499 236 253 20 112 chr12 119862237 119862335 -1395195 - MER96B DNA hAT -321 96 8 6 1499 279 0 0 0 chr12 119862744 119862775 -1394755 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1499 318 304 119 35 chr12 119864686 119864829 -1392701 - MER20 DNA MER1_type -55 164 10 6 1499 417 246 0 43 chr12 119864840 119864955 -1392575 + PB1D10 SINE Alu 5 114 -3 6 1499 291 242 61 0 chr12 119864998 119865064 -1392466 + ID4_ SINE ID 1 70 -13 6 1499 539 249 92 96 chr12 119866080 119866320 -1391210 + B4 SINE B4 5 243 -49 6 1499 356 302 127 7 chr12 119866442 119866592 -1390938 - MER47B DNA MER2_type -174 244 77 6 1499 759 272 43 5 chr12 119866522 119866707 -1390823 + ID_B1 SINE B4 27 218 -6 6 1499 694 282 31 15 chr12 119866749 119866962 -1390568 + B3A SINE B2 1 215 -1 6 1499 1979 120 34 16 chr12 119867162 119867483 -1390047 - ORR1A4 LTR MaLR 0 329 3 6 1499 230 304 120 43 chr12 119867574 119867691 -1389839 + MLT1G1 LTR MaLR 452 577 -2 6 1499 862 156 0 7 chr12 119868284 119868426 -1389104 - B1_Mm SINE Alu -6 141 1 6 1499 528 365 5 36 chr12 119869625 119869847 -1387683 + MLT1D LTR MaLR 13 227 -278 6 1499 971 122 0 39 chr12 119869861 119870015 -1387515 - RLTR19 LTR ERVK -351 148 1 6 1499 2481 250 110 11 chr12 119870183 119870991 -1386539 - RCHARR1 DNA MER1_type -1 973 86 6 1499 1088 162 0 16 chr12 119870979 119871161 -1386369 + ORR1A4 LTR MaLR 151 329 0 6 1499 4016 123 259 102 chr12 119871162 119872351 -1385179 + ORR1A4-int LTR MaLR 2 1963 0 6 1499 776 122 107 7 chr12 119872351 119872491 -1385039 + ORR1A4 LTR MaLR 1 154 -175 6 1499 279 0 0 0 chr12 119872771 119872802 -1384728 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1499 386 247 12 0 chr12 119873127 119873212 -1384318 + PB1D10 SINE Alu 30 115 -2 6 1499 355 250 166 32 chr12 119873665 119873822 -1383708 - MTD LTR MaLR 0 379 202 6 1499 21 0 0 0 chr12 119875544 119875565 -1381965 + AT_rich Low_complexity Low_complexity 1 21 0 6 1499 2647 230 52 7 chr12 119876742 119876801 -1380729 + RCHARR1 DNA MER1_type 268 326 -648 6 1499 330 26 0 0 chr12 119876801 119876840 -1380690 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1499 2647 230 52 7 chr12 119876840 119877454 -1380076 + RCHARR1 DNA MER1_type 327 971 -3 6 1499 355 233 84 84 chr12 119877715 119877846 -1379684 - MT2B LTR ERVL -363 238 108 6 1499 832 271 14 5 chr12 119877870 119878078 -1379452 - MTD LTR MaLR -209 210 1 6 1499 195 305 98 14 chr12 119878102 119878263 -1379267 + MIR SINE MIR 15 195 -73 6 1499 859 184 7 0 chr12 119878385 119878532 -1378998 + B1_Mur2 SINE Alu 1 148 -1 6 1499 952 266 39 0 chr12 119878678 119878881 -1378649 + B3 SINE B2 6 216 0 6 1499 1440 246 86 3 chr12 119879357 119879696 -1377834 - ORR1D2 LTR MaLR -3 367 1 6 1499 466 182 237 35 chr12 119879800 119879812 -1377718 - B1_Mur2 SINE Alu 0 149 138 6 1499 1004 24 8 0 chr12 119879812 119879935 -1377595 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 6 1499 466 182 237 35 chr12 119879935 119880036 -1377494 - B1_Mur2 SINE Alu -12 137 13 6 1499 299 247 39 0 chr12 119880347 119880424 -1377106 + MLT1H1 LTR MaLR 1 80 -475 6 1499 246 23 70 0 chr12 119880607 119880650 -1376880 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 6 1499 280 360 0 20 chr12 119880826 119880928 -1376602 - PB1D10 SINE Alu -17 100 1 6 1499 1733 189 21 44 chr12 119881124 119881507 -1376023 + ORR1D1 LTR MaLR 1 374 0 6 1499 204 188 0 0 chr12 119881640 119881672 -1375858 + C-rich Low_complexity Low_complexity 1 32 0 6 1499 391 272 85 23 chr12 119882979 119883156 -1374374 + MER5A DNA MER1_type 2 189 0 6 1499 396 0 0 0 chr12 119884726 119884770 -1372760 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 6 1499 611 264 0 0 chr12 119885172 119885293 -1372237 + ID_B1 SINE B4 84 204 -20 6 1499 225 0 0 0 chr12 119885302 119885327 -1372203 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1499 276 133 0 0 chr12 119885329 119885389 -1372141 + (T)n Simple_repeat Simple_repeat 1 60 0 6 1499 1229 27 7 0 chr12 119885390 119885536 -1371994 - B1_Mus2 SINE Alu 0 147 1 6 1499 22 0 0 0 chr12 119887477 119887499 -1370031 + AT_rich Low_complexity Low_complexity 1 22 0 6 1499 353 308 129 32 chr12 119888682 119888806 -1368724 + B1F SINE Alu 1 136 -13 6 1499 488 292 25 0 chr12 119891242 119891362 -1366168 + ID_B1 SINE B4 2 124 -100 6 1499 2114 105 0 22 chr12 119891459 119891770 -1365760 - RLTR23 LTR ERV1 -29 401 98 6 1499 260 49 63 32 chr12 119891797 119891860 -1365670 + (TTTG)n Simple_repeat Simple_repeat 2 66 0 6 1499 576 58 163 0 chr12 119891871 119891957 -1365573 - RLTR23 LTR ERV1 -330 100 1 6 1499 246 226 0 36 chr12 119892091 119892146 -1365384 + ID_B1 SINE B4 167 219 -5 6 1499 1111 99 0 0 chr12 119892261 119892413 -1365117 + B2_Mm2 SINE B2 2 153 -42 6 1499 203 0 37 0 chr12 119892415 119892442 -1365088 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 6 1499 251 337 20 31 chr12 119892494 119892592 -1364938 + MER44B DNA MER2_type 1 97 -453 6 1499 390 91 0 0 chr12 119892637 119892692 -1364838 + (TATG)n Simple_repeat Simple_repeat 4 58 0 6 1499 336 99 48 24 chr12 119893689 119893772 -1363758 + (CAGAGA)n Simple_repeat Simple_repeat 2 86 0 6 1499 603 266 7 35 chr12 119893772 119893916 -1363614 - RSINE1 SINE B4 -21 144 5 6 1499 424 251 38 11 chr12 119893989 119894101 -1363429 + RSINE1 SINE B4 1 116 -49 6 1499 541 198 66 0 chr12 119894106 119894212 -1363318 - B1_Mur1 SINE Alu -36 113 1 6 1499 415 333 123 0 chr12 119894271 119894442 -1363088 + ID_B1 SINE B4 2 193 -31 6 1499 570 238 40 53 chr12 119894453 119894604 -1362926 - B1_Mur4 SINE Alu 0 150 2 6 1499 1317 83 28 0 chr12 119894663 119894844 -1362686 - B2_Mm1t SINE B2 -7 186 1 6 1499 28 0 0 0 chr12 119894851 119894879 -1362651 + AT_rich Low_complexity Low_complexity 1 28 0 7 1499 230 252 28 75 chr12 119895138 119895245 -1362285 + MLT2B2 LTR ERVL 1 102 -413 7 1499 903 215 75 0 chr12 119895596 119895796 -1361734 + B3 SINE B2 1 215 -1 7 1499 322 340 32 0 chr12 119895860 119895954 -1361576 + PB1D10 SINE Alu 17 113 -4 7 1499 318 291 82 7 chr12 119896235 119896370 -1361160 - ID_B1 SINE B4 -8 216 72 7 1499 558 0 0 0 chr12 119899171 119899233 -1358297 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1499 35 0 0 0 chr12 119899978 119900013 -1357517 + AT_rich Low_complexity Low_complexity 1 35 0 7 1499 26 30 0 0 chr12 119902609 119902642 -1354888 + AT_rich Low_complexity Low_complexity 1 33 0 7 1499 1266 45 0 0 chr12 119902717 119902874 -1354656 + (TTTC)n Simple_repeat Simple_repeat 2 158 0 7 1499 731 206 7 33 chr12 119902916 119903067 -1354463 - B1_Mur2 SINE Alu -2 147 1 7 1499 736 247 168 5 chr12 119903067 119903258 -1354272 - B4A SINE B4 -62 230 9 7 1499 585 236 0 33 chr12 119903292 119903445 -1354085 + B1_Mur2 SINE Alu 1 148 -1 7 1499 312 27 0 0 chr12 119903586 119903623 -1353907 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1499 432 0 0 0 chr12 119903623 119903670 -1353860 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1499 189 0 0 0 chr12 119903787 119903808 -1353722 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1499 333 93 0 0 chr12 119904102 119904156 -1353374 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 1499 342 0 0 0 chr12 119904202 119904240 -1353290 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 1499 392 264 57 16 chr12 119904269 119904392 -1353138 - B3A SINE B2 -67 131 4 7 1499 189 0 0 0 chr12 119904407 119904428 -1353102 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1499 368 296 20 10 chr12 119904436 119904535 -1352995 - B1_Mur2 SINE Alu -49 100 1 7 1499 187 382 13 13 chr12 119905689 119905766 -1351764 + MIRm SINE MIR 195 271 -5 7 1499 185 350 47 37 chr12 119906481 119906588 -1350942 - MIR3 SINE MIR -41 167 60 7 1499 557 251 108 81 chr12 119906596 119906751 -1350779 + B3A SINE B2 4 171 -27 7 1499 387 0 0 0 chr12 119906751 119906794 -1350736 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1499 557 251 108 81 chr12 119906794 119906824 -1350706 + B3A SINE B2 172 194 -4 7 1499 727 297 6 12 chr12 119907099 119907266 -1350264 - B3A SINE B2 -31 167 2 7 1499 462 75 0 0 chr12 119907268 119907335 -1350195 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1499 592 209 149 0 chr12 119907353 119907487 -1350043 - B3A SINE B2 -42 156 3 7 1499 624 129 34 7 chr12 119908167 119908315 -1349215 + (TA)n Simple_repeat Simple_repeat 1 152 0 7 1499 3134 182 106 14 chr12 119909374 119910181 -1347349 + Lx4B LINE L1 6116 6976 -24 7 1499 522 46 0 0 chr12 119910187 119910252 -1347278 + (TA)n Simple_repeat Simple_repeat 1 65 0 7 1499 414 0 0 0 chr12 119910515 119910561 -1346969 + (TAG)n Simple_repeat Simple_repeat 1 46 0 7 1499 758 192 0 0 chr12 119910566 119910699 -1346831 - ID_B1 SINE B4 -11 213 85 7 1499 1582 266 68 45 chr12 119910723 119911487 -1346043 + L1M5 LINE L1 4489 5270 -876 7 1499 540 81 0 0 chr12 119911596 119911670 -1345860 + (GGA)n Simple_repeat Simple_repeat 3 76 0 7 1499 306 335 51 25 chr12 119911740 119911936 -1345594 + L1M5 LINE L1 5412 5612 -561 7 1499 2090 166 93 8 chr12 119912221 119912609 -1344921 - MTC LTR MaLR 0 421 1 7 1499 347 0 23 0 chr12 119912616 119912659 -1344871 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1499 774 244 25 96 chr12 119913526 119913689 -1343841 + B3A SINE B2 1 162 -36 7 1499 393 117 0 0 chr12 119913689 119913749 -1343781 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1499 609 244 25 96 chr12 119913749 119913784 -1343746 + B2_Mm2 SINE B2 151 185 -10 7 1499 1226 49 0 6 chr12 119913922 119914086 -1343444 + L1_Mus1 LINE L1 5796 5958 -609 7 1499 279 284 0 43 chr12 119914121 119914191 -1343339 - ID SINE ID -157 67 1 7 1499 214 247 61 61 chr12 119914252 119914351 -1343179 - L2a LINE L2 -6 3420 3322 7 1499 1409 73 10 16 chr12 119914352 119914546 -1342984 - B2_Mm2 SINE B2 -2 193 1 7 1499 1116 107 77 6 chr12 119914957 119915126 -1342404 - B2_Mm2 SINE B2 -14 181 1 7 1499 689 193 27 14 chr12 119915791 119915938 -1341592 + B1_Mur1 SINE Alu 1 149 0 7 1499 1351 183 92 47 chr12 119916531 119916917 -1340613 + RMER16 LTR ERVK 1 533 0 7 1499 738 349 102 11 chr12 119917114 119917566 -1339964 - MLT1D LTR MaLR 0 505 13 7 1499 411 329 98 39 chr12 119917871 119918105 -1339425 + MLT1J LTR MaLR 150 397 -115 7 1499 225 389 82 18 chr12 119918250 119918420 -1339110 + MIRc SINE MIR 68 248 -20 7 1499 424 317 72 36 chr12 119918426 119918675 -1338855 + Charlie26a DNA MER1_type 60 317 -8 7 1499 741 270 59 0 chr12 119920232 119920436 -1337094 - ID_B1 SINE B4 -6 218 3 7 1499 180 0 0 0 chr12 119920957 119920977 -1336553 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 7 1499 187 326 33 33 chr12 119921740 119921832 -1335698 - L2 LINE L2 -2044 1375 1284 7 1499 33839 34 0 0 chr12 119921888 119927518 -1330012 + L1Md_T LINE L1 1 5589 -297 7 1499 8859 11 0 4 chr12 119927518 119928563 -1328967 + L1Md_T LINE L1 5590 6585 0 7 1499 636 265 0 42 chr12 119928563 119928705 -1328825 + RSINE1 SINE B4 2 137 -28 7 1499 21 0 0 0 chr12 119928813 119928834 -1328696 + AT_rich Low_complexity Low_complexity 1 21 0 7 1499 420 214 32 104 chr12 119928897 119929022 -1328508 + PB1D10 SINE Alu 1 116 -1 7 1499 469 290 87 18 chr12 119929048 119929266 -1328264 + L1M3 LINE L1 5323 5555 -625 7 1499 1015 76 14 0 chr12 119929266 119929410 -1328120 + B2_Mm2 SINE B2 1 146 -49 7 1499 1793 152 117 47 chr12 119929490 119929739 -1327791 - ORR1C2 LTR MaLR 0 384 109 7 1499 1620 194 125 6 chr12 119929739 119929897 -1327633 + ORR1C2 LTR MaLR 1 195 -189 7 1499 414 0 0 0 chr12 119929897 119929943 -1327587 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1499 1620 194 125 6 chr12 119929943 119930127 -1327403 + ORR1C2 LTR MaLR 196 384 0 7 1499 1793 152 117 47 chr12 119930127 119930236 -1327294 - ORR1C2 LTR MaLR -276 108 1 7 1500 201 357 71 8 chr12 119930953 119931080 -1326450 - MIRb SINE MIR -39 229 95 7 1500 1027 258 47 7 chr12 119931566 119931843 -1325687 + B4A SINE B4 3 290 -2 7 1500 189 196 0 0 chr12 119931881 119931927 -1325603 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1500 342 0 0 0 chr12 119932273 119932311 -1325219 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1500 226 302 0 60 chr12 119932335 119932402 -1325128 - ID4_ SINE ID -16 67 5 7 1500 441 0 0 0 chr12 119932908 119932957 -1324573 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1500 522 310 26 37 chr12 119933304 119933495 -1324035 + MER20 DNA MER1_type 29 217 -2 7 1500 861 181 94 38 chr12 119934274 119934509 -1323021 + MTC-int LTR MaLR 1011 1258 0 7 1500 1307 257 94 37 chr12 119935644 119936346 -1321184 + L1M3 LINE L1 4289 5030 -1110 7 1500 3729 141 25 10 chr12 119936437 119937039 -1320491 + RMER19C LTR ERVK 1 611 0 7 1500 521 286 64 8 chr12 119937252 119937488 -1320042 + L1M3 LINE L1 5401 5649 -519 7 1500 235 266 47 164 chr12 119939393 119939564 -1317966 - MIRb SINE MIR -87 181 31 7 1500 360 250 12 0 chr12 119940779 119940859 -1316671 - ID4 SINE ID -2 81 1 7 1500 440 179 8 0 chr12 119940875 119940992 -1316538 + (TG)n Simple_repeat Simple_repeat 1 118 0 7 1500 746 22 11 0 chr12 119941110 119941202 -1316328 + (GA)n Simple_repeat Simple_repeat 1 93 0 7 1500 185 224 17 0 chr12 119941302 119941360 -1316170 + GA-rich Low_complexity Low_complexity 2 60 0 7 1500 587 288 24 0 chr12 119942988 119943113 -1314417 + RSINE1 SINE B4 3 130 -35 7 1500 450 0 0 0 chr12 119943127 119943177 -1314353 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1500 339 96 0 0 chr12 119943177 119943228 -1314302 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1500 1218 262 77 52 chr12 119943295 119943467 -1314063 + L1MA4 LINE L1 5320 5484 -816 7 1500 1074 148 90 25 chr12 119943467 119943668 -1313862 + B3 SINE B2 2 215 -1 7 1500 1218 262 77 52 chr12 119943668 119944078 -1313452 + L1MA4 LINE L1 5485 5917 -383 7 1500 486 169 0 0 chr12 119944189 119944278 -1313252 + (TA)n Simple_repeat Simple_repeat 2 90 0 7 1500 360 77 0 0 chr12 119944482 119944534 -1312996 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1500 460 207 12 0 chr12 119944820 119944902 -1312628 + PB1D9 SINE Alu 1 83 -37 7 1500 538 302 33 26 chr12 119946429 119946582 -1310948 + RSINE1 SINE B4 4 157 -8 7 1500 24 0 0 0 chr12 119946590 119946614 -1310916 + AT_rich Low_complexity Low_complexity 1 24 0 7 1500 1049 115 0 0 chr12 119946669 119946817 -1310713 + B1_Mus1 SINE Alu 1 148 0 7 1500 238 280 135 36 chr12 119948068 119948179 -1309351 - L2a LINE L2 -4 3422 3301 7 1500 191 36 36 0 chr12 119948286 119948314 -1309216 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1500 1239 139 5 14 chr12 119948327 119948545 -1308985 + Lx LINE L1 6425 6640 -14 7 1500 21 71 0 0 chr12 119948559 119948601 -1308929 + AT_rich Low_complexity Low_complexity 1 42 0 7 1500 586 287 21 96 chr12 119949105 119949344 -1308186 + ID_B1 SINE B4 2 222 -2 7 1500 823 201 14 0 chr12 119949353 119949497 -1308033 + B1_Mur1 SINE Alu 4 149 0 7 1500 1322 255 32 52 chr12 119949910 119950283 -1307247 - RMER15 LTR ERVL 0 575 127 7 1500 2046 166 74 30 chr12 119950283 119950396 -1307134 + MTC LTR MaLR 1 115 -306 7 1500 424 0 36 0 chr12 119950396 119950452 -1307078 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 7 1500 1115 66 0 0 chr12 119950452 119950588 -1306942 - B1_Mus2 SINE Alu -11 136 1 7 1500 2046 166 74 30 chr12 119950588 119950876 -1306654 + MTC LTR MaLR 116 420 -1 7 1500 417 254 30 144 chr12 119950876 119950962 -1306568 - RMER15 LTR ERVL -449 126 39 7 1500 482 169 0 0 chr12 119951002 119951079 -1306451 + RMER10B LTR ERVL 1 77 -321 7 1500 545 211 17 9 chr12 119951420 119951535 -1305995 - PB1D9 SINE Alu -4 116 1 7 1500 1949 144 29 0 chr12 119952027 119952339 -1305191 - ORR1A3 LTR MaLR 0 326 6 7 1500 1073 286 38 56 chr12 119952392 119952733 -1304797 - MLT1A1 LTR MaLR -1 407 73 7 1500 818 294 91 32 chr12 119952734 119952987 -1304543 - B4 SINE B4 -7 285 18 8 1500 294 29 0 0 chr12 119953030 119953065 -1304465 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 8 1500 344 247 0 27 chr12 119953065 119953140 -1304390 - ID4_ SINE ID -9 74 2 8 1500 285 232 0 42 chr12 119953143 119953215 -1304315 - MLT1A1 LTR MaLR -290 75 7 7 1500 822 48 0 0 chr12 119953489 119953592 -1303938 + (GA)n Simple_repeat Simple_repeat 2 104 0 8 1500 376 299 36 122 chr12 119953719 119953944 -1303586 - RSINE1 SINE B4 -1 291 68 8 1500 420 20 0 0 chr12 119954052 119954101 -1303429 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1500 742 264 25 0 chr12 119954102 119954261 -1303269 - RSINE1 SINE B4 0 165 3 8 1500 201 108 0 0 chr12 119954491 119954528 -1303002 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 8 1500 275 203 46 15 chr12 119955426 119955491 -1302039 + ID4 SINE ID 3 69 -14 8 1500 301 230 13 52 chr12 119955525 119955619 -1301911 + ID4 SINE ID 1 91 -61 8 1500 618 245 7 7 chr12 119955703 119955851 -1301679 - B1_Mur1 SINE Alu -1 148 1 8 1500 623 294 62 6 chr12 119956106 119956204 -1301326 + ID_B1 SINE B4 1 98 -126 8 1500 2127 186 29 14 chr12 119956204 119956618 -1300912 - MTC LTR MaLR -1 420 1 8 1500 623 294 62 6 chr12 119956618 119956697 -1300833 + ID_B1 SINE B4 99 187 -37 8 1500 351 289 58 73 chr12 119956760 119956965 -1300565 + MIR SINE MIR 40 241 -21 8 1500 216 67 0 0 chr12 119957240 119957270 -1300260 + (CAT)n Simple_repeat Simple_repeat 3 32 0 8 1500 777 230 54 6 chr12 119957274 119957440 -1300090 - B3A SINE B2 -24 174 1 8 1500 28 0 0 0 chr12 119960285 119960313 -1297217 + AT_rich Low_complexity Low_complexity 1 28 0 8 1500 483 100 0 0 chr12 119960858 119960928 -1296602 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 8 1500 390 21 0 0 chr12 119960929 119960976 -1296554 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1500 1139 83 0 0 chr12 119961568 119961713 -1295817 - B1_Mm SINE Alu -2 145 1 8 1500 271 0 51 0 chr12 119966247 119966286 -1291244 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 8 1500 1936 173 67 18 chr12 119966307 119966708 -1290822 - MTC LTR MaLR 0 421 1 8 1500 2442 41 63 3 chr12 119966901 119967220 -1290310 - ORR1A1 LTR MaLR -8 338 1 8 1500 207 200 0 0 chr12 119967411 119967456 -1290074 + (TTATA)n Simple_repeat Simple_repeat 1 45 0 8 1500 201 175 0 0 chr12 119967485 119967525 -1290005 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 8 1500 195 42 0 0 chr12 119967814 119967838 -1289692 + (TGGA)n Simple_repeat Simple_repeat 4 27 0 8 1500 832 231 64 30 chr12 119968205 119968441 -1289089 - MER2 DNA MER2_type -95 250 7 8 1500 239 50 0 48 chr12 119968716 119968758 -1288772 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 8 1500 792 98 0 0 chr12 119968951 119969073 -1288457 - L1_Mus3 LINE L1 -598 6040 5919 8 1500 4207 92 29 19 chr12 119969073 119969696 -1287834 + L1_Mus3 LINE L1 6007 6635 -3 8 1500 22 56 0 0 chr12 119970762 119970798 -1286732 + AT_rich Low_complexity Low_complexity 1 36 0 8 1500 817 254 81 0 chr12 119972144 119972341 -1285189 + B3 SINE B2 1 213 -3 8 1500 434 298 152 43 chr12 119972970 119973226 -1284304 + L2 LINE L2 2787 3070 -349 8 1500 351 0 0 0 chr12 119973262 119973301 -1284229 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1500 210 116 23 23 chr12 119973302 119973346 -1284184 + (TA)n Simple_repeat Simple_repeat 1 44 0 8 1500 883 294 102 33 chr12 119973398 119973974 -1283556 - L1M4c LINE L1 -2128 4248 3633 8 1500 1064 231 110 13 chr12 119973998 119974389 -1283141 - L1M4c LINE L1 -4169 2215 1787 8 1500 247 321 74 19 chr12 119974438 119974546 -1282984 - MIR SINE MIR -37 225 112 8 1500 184 321 155 0 chr12 119975100 119975184 -1282346 + L2 LINE L2 2325 2421 -998 8 1500 621 0 0 0 chr12 119975370 119975439 -1282091 + (TA)n Simple_repeat Simple_repeat 1 69 0 8 1500 479 333 87 28 chr12 119975541 119975794 -1281736 - MLT1J LTR MaLR 0 512 245 8 1500 383 264 112 31 chr12 119975890 119976113 -1281417 - L1MD LINE L1 -537 5822 5582 8 1500 400 321 27 35 chr12 119976203 119976392 -1281138 - L1MD LINE L1 -680 5498 5317 8 1500 683 192 253 0 chr12 119976678 119976868 -1280662 + MTD LTR MaLR 172 399 -20 8 1500 685 154 109 51 chr12 119977472 119977609 -1279921 + B1_Mus2 SINE Alu 3 147 0 8 1500 21 0 0 0 chr12 119978195 119978216 -1279314 + AT_rich Low_complexity Low_complexity 1 21 0 8 1500 230 269 19 0 chr12 119978862 119978914 -1278616 - tRNA-Ala-GCY_ tRNA tRNA -5 70 18 8 1500 432 271 76 23 chr12 119978937 119979069 -1278461 - B1F1 SINE Alu -4 145 7 8 1500 262 269 0 19 chr12 119979475 119979528 -1278002 + B4A SINE B4 95 146 -146 8 1500 258 292 45 15 chr12 119979528 119979541 -1277989 + PB1D9 SINE Alu 10 77 -43 8 1500 279 0 0 0 chr12 119979641 119979672 -1277858 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1500 432 37 0 0 chr12 119979672 119979725 -1277805 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1500 267 150 0 0 chr12 119979726 119979786 -1277744 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1500 626 285 0 0 chr12 119980266 119980403 -1277127 - RSINE1 SINE B4 -28 137 1 8 1500 5908 42 1 8 chr12 119980870 119981598 -1275932 + L1Md_F2 LINE L1 5858 6580 -2 8 1500 300 83 0 0 chr12 119982180 119982228 -1275302 + (A)n Simple_repeat Simple_repeat 1 48 0 8 1500 346 301 0 0 chr12 119982269 119982352 -1275178 + PB1D9 SINE Alu 2 84 -36 8 1500 227 306 0 0 chr12 119982369 119982457 -1275073 + (CA)n Simple_repeat Simple_repeat 1 88 0 8 1500 22 0 0 0 chr12 119982731 119982753 -1274777 + AT_rich Low_complexity Low_complexity 1 22 0 8 1500 229 300 109 22 chr12 119982787 119982879 -1274651 + L2c LINE L2 3287 3386 -1 8 1500 198 0 0 0 chr12 119983390 119983412 -1274118 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1500 213 39 0 0 chr12 119984347 119984373 -1273157 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1500 974 83 0 0 chr12 119984395 119984528 -1273002 - MTB_Mm LTR MaLR -274 133 1 8 1500 1037 253 15 37 chr12 119984528 119984790 -1272740 - B4A SINE B4 -34 258 3 8 1500 188 34 0 33 chr12 119985946 119985976 -1271554 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1500 449 193 24 0 chr12 119985977 119986060 -1271470 - B1_Mus2 SINE Alu -51 96 12 8 1500 315 247 57 80 chr12 119985989 119986077 -1271453 - MT2B LTR ERVL -361 240 155 8 1500 642 241 209 54 chr12 119986137 119986524 -1271006 - Charlie2b DNA MER1_type -41 2741 2295 8 1500 22 56 0 0 chr12 119986678 119986714 -1270816 + AT_rich Low_complexity Low_complexity 1 36 0 8 1500 25 31 0 0 chr12 119986730 119986762 -1270768 + AT_rich Low_complexity Low_complexity 1 32 0 8 1500 434 18 18 0 chr12 119987234 119987289 -1270241 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1500 468 0 0 0 chr12 119989123 119989175 -1268355 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1500 418 241 0 65 chr12 119989657 119989750 -1267780 + ID_B1 SINE B4 125 211 -13 8 1500 832 218 29 19 chr12 119990166 119990372 -1267158 + MLT2B4 LTR ERVL 7 214 -342 8 1500 984 126 17 0 chr12 119990474 119990648 -1266882 + (TCC)n Simple_repeat Simple_repeat 2 178 0 8 1500 607 65 33 0 chr12 119990670 119990762 -1266768 + (TCCC)n Simple_repeat Simple_repeat 3 97 0 8 1500 586 241 36 0 chr12 119991416 119991528 -1266002 + RSINE1 SINE B4 6 121 -44 8 1500 2447 191 36 2 chr12 119991575 119992043 -1265487 - Lx5 LINE L1 0 7050 6567 8 1500 651 206 129 41 chr12 119992043 119992190 -1265340 + 7SK RNA RNA 94 253 -78 8 1500 225 0 0 0 chr12 119992838 119992863 -1264667 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1500 339 337 39 78 chr12 119992984 119993190 -1264340 - LTR79 LTR ERVL -10 517 320 8 1500 519 310 69 5 chr12 119993372 119993560 -1263970 + MTE2b LTR MaLR 58 257 -122 8 1500 226 294 0 0 chr12 119993630 119993681 -1263849 - LTR79 LTR ERVL -406 121 71 8 1500 254 204 131 84 chr12 119993695 119993802 -1263728 + MER5A DNA MER1_type 1 112 -77 8 1500 600 306 90 12 chr12 119993963 119994232 -1263298 - B4 SINE B4 -16 276 1 8 1500 954 116 98 65 chr12 119994754 119994938 -1262592 + B2_Mm2 SINE B2 3 192 -3 8 1500 2465 81 16 0 chr12 119994948 119995270 -1262260 - ORR1A2 LTR MaLR 0 327 1 8 1500 207 0 0 0 chr12 119995573 119995596 -1261934 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1500 915 102 0 0 chr12 119996180 119996317 -1261213 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 8 1500 282 87 0 0 chr12 119996404 119996450 -1261080 + (TATG)n Simple_repeat Simple_repeat 1 46 0 8 1500 213 391 62 0 chr12 119998166 119998294 -1259236 + L3 LINE CR1 3835 3970 -519 8 1500 377 187 26 26 chr12 119998344 119998421 -1259109 + ID4 SINE ID 5 81 -2 8 1500 253 270 80 13 chr12 119998649 119998724 -1258806 + B1_Mur2 SINE Alu 17 96 -53 8 1500 1206 186 91 45 chr12 119998734 119998762 -1258768 - RMER15 LTR ERVL 0 575 532 8 1500 551 40 14 0 chr12 119998762 119998836 -1258694 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 1500 369 0 0 0 chr12 119998836 119998876 -1258654 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 1500 1206 186 91 45 chr12 119998876 119999111 -1258419 - RMER15 LTR ERVL -44 531 300 8 1500 487 124 0 20 chr12 120000040 120000105 -1257425 + (TCC)n Simple_repeat Simple_repeat 1 63 0 1 1500 1135 102 0 11 chr12 120000105 120000284 -1257246 + (TTC)n Simple_repeat Simple_repeat 3 179 0 2 1500 487 124 0 20 chr12 120000284 120000317 -1257213 + (TCC)n Simple_repeat Simple_repeat 1 33 0 3 1500 787 194 0 0 chr12 120000339 120000473 -1257057 - B1_Mus2 SINE Alu -13 134 1 4 1500 24 32 0 0 chr12 120001636 120001667 -1255863 + AT_rich Low_complexity Low_complexity 1 31 0 5 1500 843 162 0 0 chr12 120002403 120002539 -1254991 - B1_Mur3 SINE Alu -13 136 1 6 1500 510 17 0 0 chr12 120002549 120002608 -1254922 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 7 1500 1299 96 11 0 chr12 120002610 120002788 -1254742 - B2_Mm2 SINE B2 -15 180 1 8 1500 232 271 77 8 chr12 120002998 120003128 -1254402 + Lx9 LINE L1 7477 7615 -29 9 1500 324 0 0 0 chr12 120003257 120003293 -1254237 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 1 1500 770 291 6 0 chr12 120003293 120003458 -1254072 - B3 SINE B2 -16 200 35 1 1500 237 348 92 18 chr12 120005360 120005524 -1252006 - MLT1H LTR MaLR -369 180 5 1 1500 279 79 0 0 chr12 120007922 120007960 -1249570 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1500 597 288 30 18 chr12 120007977 120008143 -1249387 - B3A SINE B2 -15 183 16 1 1500 265 226 16 31 chr12 120008171 120008235 -1249295 - ID_B1 SINE B4 -66 158 96 1 1500 449 253 45 51 chr12 120008274 120008464 -1249066 + MLT1A LTR MaLR 268 505 0 1 1500 2678 117 48 48 chr12 120011170 120011628 -1245902 + RMER6B LTR ERVK 1 458 -3 1 1500 291 242 67 18 chr12 120011690 120011858 -1245672 + L1MC LINE L1 5591 5773 -351 1 1500 983 130 29 17 chr12 120012006 120012178 -1245352 - B2_Mm2 SINE B2 -19 176 3 1 1500 416 345 60 13 chr12 120014176 120014326 -1243204 + RSINE1 SINE B4 2 158 -7 2 1500 445 318 117 49 chr12 120014462 120014727 -1242803 - MLT1A LTR MaLR -26 348 66 2 1500 532 270 87 0 chr12 120014709 120014835 -1242695 - ID_B1 SINE B4 -87 137 1 2 1500 1119 129 0 0 chr12 120015043 120015221 -1242309 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 2 1500 398 20 0 19 chr12 120015221 120015272 -1242258 + (GGAGA)n Simple_repeat Simple_repeat 1 51 0 2 1500 1609 210 18 68 chr12 120015272 120015716 -1241814 - RMER10A LTR ERVL -20 422 1 2 1500 472 291 97 42 chr12 120017013 120017178 -1240352 + MER5A DNA MER1_type 1 174 -15 2 1500 351 301 101 51 chr12 120018289 120018565 -1238965 + L1ME4a LINE L1 5834 6123 -1 2 1500 35 54 0 0 chr12 120019107 120019163 -1238367 + AT_rich Low_complexity Low_complexity 1 56 0 2 1500 21 0 0 0 chr12 120019183 120019204 -1238326 + AT_rich Low_complexity Low_complexity 1 21 0 2 1500 1167 48 7 0 chr12 120019340 120019486 -1238044 + B1_Mm SINE Alu 1 147 0 3 1500 240 163 0 0 chr12 120019488 120019531 -1237999 + A-rich Low_complexity Low_complexity 1 43 0 3 1500 1407 74 11 0 chr12 120019557 120019746 -1237784 + B2_Mm1t SINE B2 2 192 -1 3 1500 227 131 0 47 chr12 120019808 120019872 -1237658 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 3 1500 390 42 0 0 chr12 120019911 120019959 -1237571 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1500 1315 261 17 37 chr12 120019959 120020296 -1237234 + MTD LTR MaLR 4 334 -62 3 1500 875 307 104 15 chr12 120021062 120021660 -1235870 + Lx8 LINE L1 6784 7468 -5 3 1500 24 0 0 0 chr12 120021687 120021711 -1235819 + AT_rich Low_complexity Low_complexity 1 24 0 3 1500 675 233 62 6 chr12 120021711 120021888 -1235642 - B3A SINE B2 -11 187 1 3 1500 491 261 25 16 chr12 120021922 120022043 -1235487 + RSINE1 SINE B4 3 124 -41 3 1500 495 270 28 28 chr12 120023962 120024103 -1233427 + B1F SINE Alu 1 141 -8 4 1500 1022 128 0 20 chr12 120024225 120024376 -1233154 + B1_Mur3 SINE Alu 2 149 0 4 1500 369 241 19 0 chr12 120026834 120026929 -1230601 - ID4_ SINE ID -49 103 6 4 1500 315 315 0 0 chr12 120027687 120027776 -1229754 + PB1D10 SINE Alu 27 115 -2 4 1500 5832 72 70 7 chr12 120027923 120029495 -1228035 - L1VL2 LINE L1 -1789 1826 153 4 1500 1604 179 49 57 chr12 120029661 120030029 -1227501 - ORR1B2 LTR MaLR -1 366 2 4 1500 281 359 87 27 chr12 120030666 120030815 -1226715 + L2b LINE L2 3002 3159 -216 4 1500 269 272 41 52 chr12 120030951 120031048 -1226482 + PB1D10 SINE Alu 22 117 0 4 1500 516 297 80 70 chr12 120031344 120031630 -1225900 - B4A SINE B4 -2 290 2 4 1500 2429 104 88 40 chr12 120032625 120033077 -1224453 + IAPLTR2_Mm LTR ERVK 1 474 -1 4 1500 2341 99 75 3 chr12 120033077 120033452 -1224078 + IAPLTR2a LTR ERVK 10 411 0 5 1500 852 125 14 156 chr12 120033453 120033671 -1223859 + IAPEz-int LTR ERVK 9 195 -6286 5 1500 226 321 0 0 chr12 120033671 120033724 -1223806 + RLTR27 LTR ERVK 223 275 -34 5 1500 239 309 0 0 chr12 120033750 120033805 -1223725 + RLTR27 LTR ERVK 221 275 -34 5 1500 3328 51 22 16 chr12 120033805 120034371 -1223159 + IAPEz-int LTR ERVK 168 662 -5819 5 1500 2063 75 0 0 chr12 120034371 120034649 -1222881 + IAPEz-int LTR ERVK 1359 1636 -4845 5 1500 5659 46 4 19 chr12 120034648 120035403 -1222127 + IAPEz-int LTR ERVK 5736 6479 -2 5 1500 2405 107 73 3 chr12 120035405 120035789 -1221741 + IAPLTR2a LTR ERVK 1 411 0 5 1500 1536 165 15 30 chr12 120035840 120036172 -1221358 - Lx7 LINE L1 0 7696 7370 5 1500 1506 201 58 6 chr12 120036183 120036528 -1221002 - L1_Mur3 LINE L1 -7310 402 40 5 1500 262 339 0 0 chr12 120036621 120036686 -1220844 + ID4_ SINE ID 8 72 -11 5 1500 233 267 9 0 chr12 120036687 120036803 -1220727 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 1500 253 370 44 0 chr12 120036803 120036938 -1220592 + (CATG)n Simple_repeat Simple_repeat 2 142 0 5 1500 363 327 0 0 chr12 120036818 120036919 -1220611 + (CA)n Simple_repeat Simple_repeat 2 102 0 5 1500 382 231 18 88 chr12 120037659 120037671 -1219859 + MT2B LTR ERVL 152 155 -446 5 1500 669 227 8 0 chr12 120037671 120037790 -1219740 + B1_Mur2 SINE Alu 2 121 -28 6 1500 180 0 0 0 chr12 120037792 120037812 -1219718 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1500 396 0 0 0 chr12 120038014 120038058 -1219472 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1500 3179 46 33 5 chr12 120038271 120038667 -1218863 - MTB_Mm LTR MaLR 0 407 1 6 1500 308 265 0 7 chr12 120039182 120039319 -1218211 + (TATG)n Simple_repeat Simple_repeat 2 137 0 6 1500 217 267 8 8 chr12 120039364 120039481 -1218049 + (TG)n Simple_repeat Simple_repeat 1 117 0 6 1500 613 275 7 32 chr12 120039485 120039639 -1217891 - RSINE1 SINE B4 -2 163 14 6 1500 782 280 65 47 chr12 120041256 120041533 -1215997 + B4A SINE B4 1 282 -10 6 1500 467 350 31 52 chr12 120041874 120042103 -1215427 + MLT1H2 LTR MaLR 25 248 -241 6 1500 682 60 20 0 chr12 120042261 120042361 -1215169 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 6 1500 1565 320 85 53 chr12 120042609 120043443 -1214087 + MLT1H2-int LTR MaLR 235 1095 -314 6 1500 433 247 0 0 chr12 120043481 120043562 -1213968 - RSINE1 SINE B4 -79 86 6 7 1500 1218 113 11 0 chr12 120043652 120043829 -1213701 + B2_Mm1t SINE B2 1 179 -14 7 1500 301 133 11 31 chr12 120043914 120043979 -1213551 + B2_Mm2 SINE B2 48 114 -102 7 1500 229 0 0 0 chr12 120043969 120043997 -1213533 + B2_Mm2 SINE B2 137 164 -31 7 1500 306 0 0 0 chr12 120043999 120044033 -1213497 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 7 1500 234 373 13 51 chr12 120044061 120044140 -1213390 + MER58B DNA MER1_type 5 80 -261 7 1500 313 198 173 55 chr12 120044145 120044244 -1213286 + B1F SINE Alu 1 117 -32 7 1500 271 233 198 72 chr12 120044157 120044268 -1213262 + ID_B1 SINE B4 100 224 0 7 1500 340 309 123 10 chr12 120044301 120044504 -1213026 + MER58B DNA MER1_type 100 325 -16 7 1500 430 274 53 9 chr12 120045318 120045432 -1212098 + B1F SINE Alu 22 140 -9 7 1500 896 275 17 13 chr12 120045610 120045842 -1211688 + B4A SINE B4 1 233 -59 7 1500 421 271 16 116 chr12 120046429 120046550 -1210980 + ID_B1 SINE B4 91 199 -25 8 1500 255 200 0 20 chr12 120046990 120047041 -1210489 + ID4_ SINE ID 5 54 -29 8 1500 204 97 0 0 chr12 120047104 120047135 -1210395 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1500 481 275 67 0 chr12 120047230 120047350 -1210180 + B1F1 SINE Alu 16 143 -6 8 1500 624 84 31 10 chr12 120047876 120047972 -1209558 + B1_Mus2 SINE Alu 49 146 -1 8 1500 270 333 0 0 chr12 120048113 120048188 -1209342 - L2b LINE L2 0 3375 3301 8 1500 414 88 0 93 chr12 120048228 120048303 -1209227 + MTB_Mm LTR MaLR 3 70 -337 8 1500 559 311 7 29 chr12 120048283 120048419 -1209111 + RSINE1 SINE B4 32 164 -1 8 1500 237 327 84 28 chr12 120048966 120048992 -1208538 - B4A SINE B4 -167 125 16 8 1500 407 215 0 0 chr12 120048992 120049070 -1208460 - ID4_ SINE ID -59 93 16 8 1500 377 281 10 10 chr12 120049098 120049195 -1208335 - PB1D10 SINE Alu -8 109 13 9 1500 228 100 0 0 chr12 120049222 120049262 -1208268 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 9 1500 273 314 29 0 chr12 120049420 120049490 -1208040 + ID4_ SINE ID 12 83 0 9 1500 650 75 11 0 chr12 120049490 120049583 -1207947 + (GAAAA)n Simple_repeat Simple_repeat 2 95 0 9 1500 477 0 0 0 chr12 120050638 120050691 -1206839 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1500 435 302 0 0 chr12 120051483 120051589 -1205941 + PB1D10 SINE Alu 4 109 -8 9 1500 206 234 12 49 chr12 120051929 120052010 -1205520 - MIRc SINE MIR -2 266 189 9 1500 300 313 0 88 chr12 120052293 120052384 -1205146 + MLT1J1 LTR MaLR 8 90 -354 9 1500 248 172 17 0 chr12 120052614 120052672 -1204858 + (CATA)n Simple_repeat Simple_repeat 4 62 0 9 1500 189 0 0 0 chr12 120053425 120053446 -1204084 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 1500 6297 73 4 4 chr12 120053468 120054298 -1203232 - L1_Mus4 LINE L1 -2 6634 5805 1 1500 325 293 37 0 chr12 120054335 120054417 -1203113 + B1F SINE Alu 11 95 -54 1 1500 365 0 22 0 chr12 120054421 120054466 -1203064 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1500 672 277 79 6 chr12 120055888 120056066 -1201464 + B3A SINE B2 1 191 -7 1 1500 183 42 0 0 chr12 120056172 120056196 -1201334 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1500 503 250 9 0 chr12 120056201 120056309 -1201221 + RSINE1 SINE B4 35 143 -22 1 1500 182 118 0 29 chr12 120056463 120056498 -1201032 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1500 288 0 0 0 chr12 120056507 120056539 -1200991 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1500 608 266 75 21 chr12 120056552 120056627 -1200903 - MTE2b LTR MaLR -169 210 139 1 1500 2912 68 39 5 chr12 120056627 120057014 -1200516 - MTB LTR MaLR 0 400 1 1 1500 608 266 75 21 chr12 120057014 120057126 -1200404 - MTE2b LTR MaLR -241 138 14 1 1500 193 204 73 122 chr12 120057204 120057327 -1200203 - MIR SINE MIR -71 191 75 1 1500 1272 152 18 9 chr12 120057560 120057786 -1199744 + ORR1B1 LTR MaLR 166 393 -1 1 1500 253 350 57 24 chr12 120057856 120057979 -1199551 + Tigger5 DNA MER2_type 62 188 -2218 1 1500 227 266 75 0 chr12 120058125 120058219 -1199311 + B4 SINE B4 67 167 -125 1 1500 408 250 10 0 chr12 120058149 120058249 -1199281 + PB1D10 SINE Alu 9 109 -8 1 1500 873 76 0 0 chr12 120058264 120058382 -1199148 + (GGAA)n Simple_repeat Simple_repeat 2 119 0 1 1500 828 191 14 0 chr12 120058410 120058557 -1198973 + B1_Mur2 SINE Alu 1 149 0 1 1500 301 272 114 0 chr12 120058583 120058697 -1198833 + MT2A LTR ERVL 406 532 -1 1 1500 221 380 0 37 chr12 120058923 120059005 -1198525 - PB1D10 SINE Alu -13 104 26 1 1500 445 214 107 0 chr12 120059937 120060040 -1197490 - RSINE1 SINE B4 -50 115 2 1 1500 3994 89 9 0 chr12 120060219 120060790 -1196740 + MT2B2 LTR ERVL 9 584 0 1 1500 346 372 6 37 chr12 120061525 120061687 -1195843 + MLT1E2 LTR MaLR 334 490 -137 1 187 1590 208 11 43 chr12 120061722 120062094 -1195436 + BGLII_B LTR ERVK 1 360 -81 1 1501 783 169 6 30 chr12 120062084 120062249 -1195281 - BGLII_B LTR ERVK -280 161 1 1 1501 611 154 8 75 chr12 120062249 120062382 -1195148 + B1_Mm SINE Alu 15 138 -9 1 1501 225 0 0 0 chr12 120062382 120062407 -1195123 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1501 2370 23 30 0 chr12 120062568 120062870 -1194660 - ORR1A0 LTR MaLR 0 346 36 1 1501 14159 49 20 1 chr12 120062870 120064625 -1192905 - ORR1A0-int LTR MaLR -2 1790 1 1 1501 3020 35 3 0 chr12 120064625 120064970 -1192560 - ORR1A0 LTR MaLR 0 346 1 1 1501 22 35 0 0 chr12 120065690 120065719 -1191811 + AT_rich Low_complexity Low_complexity 1 29 0 1 1501 539 347 31 58 chr12 120066112 120066372 -1191158 + B4A SINE B4 39 291 -1 1 1501 267 31 0 0 chr12 120066927 120066959 -1190571 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1501 220 331 67 30 chr12 120066982 120067116 -1190414 + MER5B DNA MER1_type 39 177 -1 1 1501 197 211 0 19 chr12 120067419 120067472 -1190058 + CT-rich Low_complexity Low_complexity 3 54 0 1 1501 234 299 0 29 chr12 120067483 120067552 -1189978 - ID4_ SINE ID -16 67 1 1 1501 200 122 24 0 chr12 120067751 120067792 -1189738 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1 1501 1248 41 0 0 chr12 120068935 120069080 -1188450 - B1_Mm SINE Alu -2 145 1 1 1501 196 30 61 0 chr12 120069270 120069303 -1188227 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1501 273 234 5 78 chr12 120069503 120069609 -1187921 + B1_Mus2 SINE Alu 25 120 0 1 1501 2300 74 45 3 chr12 120070350 120070660 -1186870 - ORR1A2 LTR MaLR -4 323 1 1 1501 272 228 0 112 chr12 120070728 120070798 -1186732 + PB1D10 SINE Alu 32 97 -20 1 1501 1236 249 72 11 chr12 120070798 120071147 -1186383 - ORR1D2 LTR MaLR 0 370 1 1 1501 272 228 0 112 chr12 120071147 120071165 -1186365 + PB1D10 SINE Alu 98 110 -7 1 1501 456 301 26 7 chr12 120071173 120071327 -1186203 + RSINE1 SINE B4 3 159 -6 1 1501 588 223 46 8 chr12 120071449 120071580 -1185950 + B1F1 SINE Alu 13 148 -1 1 1501 252 0 0 0 chr12 120071744 120071772 -1185758 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1501 876 140 0 22 chr12 120071775 120071914 -1185616 - B1_Mur3 SINE Alu -13 136 1 1 1501 21 36 0 0 chr12 120072333 120072361 -1185169 + AT_rich Low_complexity Low_complexity 1 28 0 1 1501 212 143 24 0 chr12 120073054 120073096 -1184434 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 1 1501 402 212 0 12 chr12 120074360 120074446 -1183084 + B1F SINE Alu 5 89 -60 1 1501 252 320 56 44 chr12 120074732 120074892 -1182638 + MER5A DNA MER1_type 6 167 -22 1 1501 24 0 0 0 chr12 120075462 120075486 -1182044 + GC_rich Low_complexity Low_complexity 1 24 0 1 1501 204 237 0 0 chr12 120078164 120078202 -1179328 + polypyrimidine Low_complexity Low_complexity 2 39 0 1 1501 446 33 17 0 chr12 120078556 120078616 -1178914 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1501 221 197 0 29 chr12 120079266 120079334 -1178196 + (CACCC)n Simple_repeat Simple_repeat 1 66 0 1 1501 237 65 0 0 chr12 120079623 120079654 -1177876 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1501 486 0 0 0 chr12 120079687 120079741 -1177789 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1501 504 0 0 0 chr12 120082184 120082240 -1175290 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1501 288 0 0 0 chr12 120082996 120083028 -1174502 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1501 26 0 0 0 chr12 120085593 120085619 -1171911 + GC_rich Low_complexity Low_complexity 1 26 0 1 1501 452 86 0 14 chr12 120086254 120086325 -1171205 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1501 204 125 0 0 chr12 120087088 120087120 -1170410 + (CGG)n Simple_repeat Simple_repeat 3 34 0 1 1501 228 86 0 0 chr12 120087289 120087324 -1170206 + (CGG)n Simple_repeat Simple_repeat 2 36 0 1 1501 261 83 0 0 chr12 120089676 120089712 -1167818 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1501 207 0 0 0 chr12 120093186 120093209 -1164321 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1 1501 206 111 56 0 chr12 120093924 120093960 -1163570 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1501 459 0 0 0 chr12 120094081 120094132 -1163398 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1 1501 185 0 40 0 chr12 120095769 120095794 -1161736 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1 1501 450 53 0 0 chr12 120097188 120097245 -1160285 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1501 287 61 41 0 chr12 120097534 120097583 -1159947 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 1 1501 232 65 21 42 chr12 120098289 120098337 -1159193 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1501 22 0 0 0 chr12 120098958 120098980 -1158550 + AT_rich Low_complexity Low_complexity 1 22 0 1 1501 572 297 75 5 chr12 120099496 120099682 -1157848 - ID_B1 SINE B4 -3 221 23 1 1501 396 0 0 0 chr12 120099886 120099930 -1157600 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1501 240 128 0 60 chr12 120099943 120099993 -1157537 + B1_Mur4 SINE Alu 104 150 0 1 1501 183 114 0 0 chr12 120100446 120100481 -1157049 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1501 273 274 0 0 chr12 120101759 120101821 -1155709 + CT-rich Low_complexity Low_complexity 4 65 0 1 1501 207 0 0 0 chr12 120101955 120101978 -1155552 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1501 742 200 14 0 chr12 120101982 120102122 -1155408 - B1_Mus1 SINE Alu -5 143 2 1 1501 1268 169 94 122 chr12 120102237 120102621 -1154909 + ORR1D1 LTR MaLR 2 374 0 1 1501 830 245 6 32 chr12 120103592 120103791 -1153739 + B4A SINE B4 85 282 -10 1 1501 297 0 0 0 chr12 120103791 120103824 -1153706 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1501 459 0 0 0 chr12 120103824 120103874 -1153656 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1501 830 238 5 31 chr12 120103874 120103886 -1153644 + B4A SINE B4 283 291 -1 1 1501 304 165 51 3 chr12 120104502 120104601 -1152929 + PB1D10 SINE Alu 5 108 -41 1 1501 354 250 147 22 chr12 120104610 120104794 -1152736 - L1M2 LINE L1 -798 5502 5296 1 1501 881 226 5 16 chr12 120105949 120106142 -1151388 - B3 SINE B2 -25 191 1 1 1501 814 264 43 0 chr12 120107484 120107692 -1149838 - ID_B1 SINE B4 0 224 8 1 1501 513 210 188 0 chr12 120107788 120107926 -1149604 - B3 SINE B2 -6 210 47 1 1501 292 235 29 0 chr12 120107908 120107976 -1149554 - PB1D10 SINE Alu -46 71 2 1 1501 225 301 13 52 chr12 120107917 120107994 -1149536 - B4 SINE B4 -146 146 73 1 1501 582 184 10 0 chr12 120108513 120108616 -1148914 + B1_Mus1 SINE Alu 2 105 -43 1 1501 246 228 72 48 chr12 120108551 120108634 -1148896 + RLTR25B LTR ERVK 441 525 -503 1 1501 7463 66 22 18 chr12 120108634 120109719 -1147811 + L1_Mus2 LINE L1 5481 6566 0 1 1501 1851 176 99 38 chr12 120109735 120110538 -1146992 + RMER13B LTR ERVK 1 884 -24 1 1501 249 232 0 35 chr12 120110575 120110633 -1146897 + B1_Mus2 SINE Alu 4 59 -88 1 1501 314 0 0 161 chr12 120110634 120110796 -1146734 + (CAGAG)n Simple_repeat Simple_repeat 5 140 0 1 1501 446 232 0 40 chr12 120110799 120110898 -1146632 + B1_Mur1 SINE Alu 42 136 -13 1 1501 189 0 0 0 chr12 120110898 120110919 -1146611 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1501 329 313 69 48 chr12 120111866 120112073 -1145457 - L2a LINE L2 -18 3408 3157 1 1501 860 191 2 34 chr12 120113847 120114053 -1143477 - B3 SINE B2 -7 188 1 1 1501 28 0 0 0 chr12 120114106 120114134 -1143396 + AT_rich Low_complexity Low_complexity 1 28 0 1 1501 209 172 33 33 chr12 120114171 120114231 -1143299 + CT-rich Low_complexity Low_complexity 3 62 0 1 1501 297 0 0 0 chr12 120114232 120114265 -1143265 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1501 279 266 74 25 chr12 120114268 120114349 -1143181 + PB1 SINE Alu 39 123 -4 1 1501 1608 16 22 0 chr12 120114647 120114830 -1142700 + B2_Mm1t SINE B2 1 187 -6 2 1501 189 0 0 0 chr12 120115019 120115040 -1142490 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1501 1198 62 0 0 chr12 120115044 120115190 -1142340 - B1_Mm SINE Alu 0 147 2 2 1501 208 178 44 0 chr12 120115244 120115289 -1142241 + CT-rich Low_complexity Low_complexity 2 48 0 2 1501 379 282 179 0 chr12 120117065 120117182 -1140348 + B1_Mur2 SINE Alu 2 139 -10 2 1501 180 0 0 0 chr12 120117182 120117202 -1140328 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 2 1501 451 216 130 0 chr12 120117545 120117677 -1139853 - B1F1 SINE Alu 0 149 1 2 1501 321 304 65 97 chr12 120117677 120117733 -1139797 - B4 SINE B4 -199 93 44 2 1501 315 207 167 105 chr12 120117598 120117760 -1139770 - MT2B2 LTR ERVL -344 240 69 2 1501 2039 165 46 14 chr12 120117857 120118225 -1139305 - ORR1C2 LTR MaLR -2 382 3 2 1501 186 226 55 36 chr12 120118297 120118352 -1139178 + MIR SINE MIR 96 151 -111 2 1501 196 224 16 49 chr12 120119452 120119513 -1138017 + MIRb SINE MIR 141 199 -69 2 1501 233 353 109 14 chr12 120119835 120119973 -1137557 - MIRc SINE MIR -46 222 72 2 1501 482 172 87 26 chr12 120120432 120120563 -1136967 - B1F SINE Alu -8 141 4 2 1501 470 323 7 15 chr12 120121091 120121226 -1136304 - RSINE1 SINE B4 -20 145 12 2 1501 198 261 156 57 chr12 120121399 120121521 -1136009 + MER5A DNA MER1_type 16 149 -40 2 1501 570 93 0 0 chr12 120121859 120121945 -1135585 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1501 564 87 0 0 chr12 120121945 120122037 -1135493 + (GA)n Simple_repeat Simple_repeat 2 93 0 2 1501 442 235 112 0 chr12 120122065 120122163 -1135367 - ID_B1 SINE B4 -104 120 12 2 1501 577 203 16 63 chr12 120122601 120122727 -1134803 + B1_Mur1 SINE Alu 1 120 -29 2 1501 444 178 28 9 chr12 120122745 120122853 -1134677 + Lx9 LINE L1 7534 7643 -1 2 1501 233 139 0 0 chr12 120123364 120123400 -1134130 - PB1D9 SINE Alu -84 36 1 2 1501 211 278 167 0 chr12 120123400 120123437 -1134093 - B4 SINE B4 -207 85 37 2 1501 22 0 0 0 chr12 120123580 120123602 -1133928 + AT_rich Low_complexity Low_complexity 1 22 0 2 1501 27 29 0 0 chr12 120123612 120123646 -1133884 + AT_rich Low_complexity Low_complexity 1 34 0 2 1501 308 245 0 0 chr12 120124402 120124496 -1133034 + L1MA7 LINE L1 6198 6291 0 2 1501 961 221 6 6 chr12 120126859 120127032 -1130498 - B3 SINE B2 -43 173 1 2 1501 2413 108 70 3 chr12 120127134 120127505 -1130025 + MTB_Mm LTR MaLR 1 396 -11 2 1501 576 271 14 0 chr12 120127587 120127727 -1129803 - RSINE1 SINE B4 -19 146 5 2 1501 486 0 0 0 chr12 120128559 120128613 -1128917 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 1501 207 0 0 0 chr12 120129495 120129518 -1128012 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1501 770 207 0 7 chr12 120129518 120129650 -1127880 - B1_Mur4 SINE Alu -11 139 8 2 1501 387 0 0 0 chr12 120129868 120129911 -1127619 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1501 361 260 107 61 chr12 120129911 120130042 -1127488 - RSINE1 SINE B4 -27 138 2 2 1501 764 188 0 4 chr12 120130707 120130944 -1126586 + (TG)n Simple_repeat Simple_repeat 1 236 0 2 1501 303 309 75 59 chr12 120130944 120131130 -1126400 - L1MC4a LINE L1 -1328 6667 6479 2 1501 183 156 0 0 chr12 120131130 120131162 -1126368 + CT-rich Low_complexity Low_complexity 5 36 0 2 1501 192 152 0 0 chr12 120131175 120131208 -1126322 + (CCCTA)n Simple_repeat Simple_repeat 2 34 0 2 1501 400 262 112 0 chr12 120131224 120131331 -1126199 - PB1D9 SINE Alu -1 119 1 2 1501 270 305 24 24 chr12 120131258 120131342 -1126188 - MT2B LTR ERVL -364 237 154 2 1501 420 172 106 9 chr12 120131781 120131898 -1125632 + B1_Mur1 SINE Alu 12 138 -11 2 1501 557 274 57 0 chr12 120132036 120132160 -1125370 - B1_Mur1 SINE Alu -17 132 2 2 1501 318 282 0 105 chr12 120132089 120132184 -1125346 - B4A SINE B4 -136 156 72 2 1501 1843 173 10 3 chr12 120132212 120132525 -1125005 + MTC LTR MaLR 1 315 -106 2 1501 540 230 20 10 chr12 120132560 120132732 -1124798 + L1_Mur2 LINE L1 4841 5013 -1133 2 1501 683 173 320 0 chr12 120132823 120132979 -1124551 + B3 SINE B2 1 206 -10 2 1501 296 222 156 64 chr12 120133088 120133261 -1124269 + L1MEc LINE L1 30 218 -6182 2 1501 276 262 12 23 chr12 120133429 120133515 -1124015 + L1MEc LINE L1 545 629 -5771 2 1501 418 298 52 0 chr12 120133578 120133769 -1123761 + L1MEc LINE L1 725 925 -5475 2 1501 702 261 123 66 chr12 120133885 120134070 -1123460 + Cheshire DNA MER1_type 514 721 -1699 2 1501 1331 106 11 0 chr12 120134070 120134259 -1123271 - B2_Mm1t SINE B2 -2 191 1 2 1501 702 261 123 66 chr12 120134259 120134454 -1123076 + Cheshire DNA MER1_type 722 916 -1504 2 1501 249 33 0 0 chr12 120134460 120134490 -1123040 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1501 1232 87 0 0 chr12 120134490 120134651 -1122879 - B2_Mm2 SINE B2 -34 161 1 2 1501 243 278 13 40 chr12 120134681 120134756 -1122774 + MT2B2 LTR ERVL 169 241 -343 2 1501 381 245 108 0 chr12 120134690 120134792 -1122738 + B1F SINE Alu 11 123 -26 2 1501 357 24 0 0 chr12 120134795 120134837 -1122693 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1501 857 263 89 31 chr12 120134923 120135272 -1122258 + Cheshire DNA MER1_type 935 1303 -1117 2 1501 790 262 39 30 chr12 120135264 120135496 -1122034 + Cheshire DNA MER1_type 1527 1760 -660 2 1501 1138 218 0 5 chr12 120136508 120136725 -1120805 - B3 SINE B2 0 216 1 2 1501 24 32 0 0 chr12 120136823 120136854 -1120676 + AT_rich Low_complexity Low_complexity 1 31 0 2 1501 537 16 0 0 chr12 120137226 120137288 -1120242 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1501 25 0 0 0 chr12 120137412 120137437 -1120093 + AT_rich Low_complexity Low_complexity 1 25 0 2 1501 289 338 75 34 chr12 120137444 120137591 -1119939 - RSINE1 SINE B4 0 165 13 2 1501 1092 93 6 11 chr12 120137616 120137790 -1119740 + (TCCC)n Simple_repeat Simple_repeat 3 175 0 2 1501 538 251 267 14 chr12 120138170 120138380 -1119150 + B4A SINE B4 8 270 -22 2 1501 1121 94 0 24 chr12 120138517 120138681 -1118849 - B2_Mm2 SINE B2 -34 161 2 2 1501 21 0 0 0 chr12 120138687 120138708 -1118822 + AT_rich Low_complexity Low_complexity 1 21 0 2 1501 318 82 58 12 chr12 120138728 120138814 -1118716 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 2 1501 469 286 134 0 chr12 120138842 120138954 -1118576 - B1F SINE Alu -22 127 1 2 1501 412 273 9 35 chr12 120139219 120139333 -1118197 + PB1D10 SINE Alu 5 115 -2 2 1501 553 280 25 0 chr12 120139627 120139784 -1117746 + RSINE1 SINE B4 3 163 -2 2 1501 180 0 0 0 chr12 120140229 120140249 -1117281 + (TCTA)n Simple_repeat Simple_repeat 4 23 0 2 1501 205 146 0 0 chr12 120140417 120140435 -1117095 + (CAAAAA)n Simple_repeat Simple_repeat 3 20 0 2 1501 194 0 0 37 chr12 120140435 120140462 -1117068 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 1501 205 146 0 0 chr12 120140462 120140484 -1117046 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2 1501 288 91 0 0 chr12 120140784 120140828 -1116702 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 1501 384 318 126 11 chr12 120141574 120141749 -1115781 - MIR SINE MIR -50 212 18 2 1501 189 0 0 0 chr12 120142369 120142390 -1115140 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1501 696 249 28 22 chr12 120142731 120142912 -1114618 + B3A SINE B2 1 182 -16 2 1501 26 0 0 0 chr12 120142923 120142949 -1114581 + AT_rich Low_complexity Low_complexity 1 26 0 2 1501 315 0 0 0 chr12 120143977 120144012 -1113518 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1501 297 0 0 0 chr12 120144012 120144045 -1113485 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1501 666 325 29 6 chr12 120144049 120144219 -1113311 - B3A SINE B2 -24 174 1 2 1501 192 152 0 0 chr12 120145032 120145065 -1112465 + CT-rich Low_complexity Low_complexity 4 36 0 2 1501 562 330 42 53 chr12 120145073 120145358 -1112172 - B4 SINE B4 0 292 11 2 1501 21 0 0 0 chr12 120146079 120146100 -1111430 + AT_rich Low_complexity Low_complexity 1 21 0 2 1501 626 210 196 17 chr12 120146350 120146529 -1111001 + B3 SINE B2 1 211 -5 2 1501 494 355 40 40 chr12 120146721 120146947 -1110583 - RCHARR1 DNA MER1_type -743 231 6 2 1501 479 197 48 127 chr12 120146985 120147176 -1110354 - B3 SINE B2 -7 188 1 2 1501 1177 94 39 11 chr12 120147176 120147358 -1110172 + Lx3A LINE L1 6792 6978 -3 2 1501 252 86 0 0 chr12 120147398 120147433 -1110097 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1501 249 267 65 29 chr12 120147889 120148028 -1109502 - L1MD LINE L1 -801 5345 5202 2 1501 243 0 0 0 chr12 120148204 120148231 -1109299 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1501 522 240 123 8 chr12 120148234 120148364 -1109166 - RSINE1 SINE B4 -13 152 8 2 1501 264 30 0 0 chr12 120148688 120148721 -1108809 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 1501 1399 192 171 6 chr12 120148721 120149061 -1108469 + MTD LTR MaLR 21 416 -3 2 1501 515 304 7 21 chr12 120150118 120150259 -1107271 + B4 SINE B4 2 140 -152 2 1501 440 290 135 20 chr12 120150324 120150407 -1107123 + B4 SINE B4 128 209 -83 2 1501 300 27 0 0 chr12 120150407 120150444 -1107086 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1501 440 290 135 20 chr12 120150444 120150508 -1107022 + B4 SINE B4 210 292 0 2 1501 359 257 5 27 chr12 120150535 120150719 -1106811 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 2 1501 1921 249 184 32 chr12 120151593 120152366 -1105164 + Lx8 LINE L1 6258 7147 -326 2 1501 310 263 66 84 chr12 120152364 120152530 -1105000 + Lx8 LINE L1 7301 7463 -10 2 1501 575 296 50 114 chr12 120152614 120152702 -1104828 - B3 SINE B2 -27 189 114 2 1501 559 197 106 0 chr12 120152702 120152834 -1104696 - B1_Mus1 SINE Alu 0 148 3 2 1501 575 296 50 114 chr12 120152834 120152947 -1104583 - B3 SINE B2 -103 113 1 2 1501 265 315 27 18 chr12 120153007 120153117 -1104413 - MIR SINE MIR -65 197 87 2 1501 641 86 19 0 chr12 120153194 120153299 -1104231 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 2 1501 249 33 0 0 chr12 120153303 120153333 -1104197 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1501 906 148 17 0 chr12 120153349 120153525 -1104005 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1501 566 319 33 13 chr12 120153537 120153713 -1103817 - B4A SINE B4 -4 288 116 3 1501 776 169 42 7 chr12 120154336 120154479 -1103051 + B1_Mus1 SINE Alu 1 148 0 3 1501 1011 121 141 35 chr12 120154593 120154791 -1102739 + URR1A DNA MER1_type 8 226 0 3 1501 22 0 0 0 chr12 120154957 120154979 -1102551 + AT_rich Low_complexity Low_complexity 1 22 0 3 1501 1283 91 11 0 chr12 120154979 120155155 -1102375 - B2_Mm1t SINE B2 -14 179 2 3 1501 183 80 0 0 chr12 120155172 120155197 -1102333 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1501 1036 291 21 11 chr12 120155251 120155536 -1101994 - B4A SINE B4 0 292 5 3 1501 445 213 117 0 chr12 120155571 120155665 -1101865 - B1F SINE Alu -44 105 1 3 1501 325 313 141 16 chr12 120157399 120157584 -1099946 - L1M5 LINE L1 -355 5818 5611 3 1501 424 281 70 0 chr12 120157631 120157816 -1099714 - L1M5 LINE L1 -711 5462 5265 3 1501 221 224 0 20 chr12 120158074 120158124 -1099406 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 3 1501 516 348 0 0 chr12 120158863 120159004 -1098526 + ID_B1 SINE B4 82 222 -2 3 1501 726 219 7 7 chr12 120159012 120159148 -1098382 + B1_Mur3 SINE Alu 3 139 -10 3 1501 259 44 44 0 chr12 120159148 120159193 -1098337 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 1501 772 236 76 15 chr12 120159505 120159703 -1097827 + B3 SINE B2 1 210 -6 3 1501 403 291 8 76 chr12 120159922 120160041 -1097489 - PB1D10 SINE Alu -3 114 4 3 1501 796 268 22 22 chr12 120160041 120160120 -1097410 - ID SINE ID -144 80 2 3 1501 185 140 0 57 chr12 120160139 120160192 -1097338 + T-rich Low_complexity Low_complexity 1 50 0 3 1501 341 211 133 35 chr12 120160326 120160439 -1097091 - Lx8 LINE L1 -175 7298 7175 3 1501 353 200 37 24 chr12 120160583 120160665 -1096865 + MER53 DNA hAT 106 188 -5 3 1501 321 290 112 31 chr12 120160689 120161045 -1096485 - L1M4 LINE L1 -423 5739 5355 3 1501 1259 50 6 22 chr12 120161063 120161246 -1096284 - L1Md_F2 LINE L1 -1 6581 6402 3 1501 4125 30 0 0 chr12 120161246 120161745 -1095785 + L1Md_F2 LINE L1 5869 6367 -215 3 1501 320 289 56 7 chr12 120161764 120161907 -1095623 - L1M4 LINE L1 -844 5302 5153 3 1501 250 254 150 17 chr12 120161916 120162036 -1095494 - BC1_Mm scRNA scRNA -14 138 3 3 1501 24 53 0 0 chr12 120162047 120162085 -1095445 + AT_rich Low_complexity Low_complexity 1 38 0 3 1501 224 324 98 0 chr12 120162109 120162211 -1095319 - PB1D7 SINE Alu -6 114 3 3 1501 351 0 0 0 chr12 120162217 120162256 -1095274 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1501 24 53 0 0 chr12 120162256 120162294 -1095236 + AT_rich Low_complexity Low_complexity 1 38 0 3 1501 982 113 12 6 chr12 120162296 120162465 -1095065 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 3 1501 1047 107 27 0 chr12 120162511 120162661 -1094869 - B2_Mm2 SINE B2 -41 154 1 3 1501 246 156 0 0 chr12 120162688 120162752 -1094778 + A-rich Low_complexity Low_complexity 1 64 0 3 1501 496 261 120 53 chr12 120162768 120162875 -1094655 - B3 SINE B2 -56 160 43 3 1501 3360 52 25 142 chr12 120162875 120163433 -1094097 - MT2_Mm LTR ERVL 0 493 1 3 1501 496 261 120 53 chr12 120163433 120163475 -1094055 - B3 SINE B2 -174 42 1 3 1501 354 333 46 0 chr12 120163576 120163684 -1093846 - B1F SINE Alu -2 147 35 3 1501 244 285 14 58 chr12 120164336 120164474 -1093056 - L1MC LINE L1 -2699 3447 3316 3 1501 210 208 0 0 chr12 120164541 120164589 -1092941 + CT-rich Low_complexity Low_complexity 1 48 0 3 1501 21 57 0 0 chr12 120164967 120165002 -1092528 + AT_rich Low_complexity Low_complexity 1 35 0 3 1501 214 354 8 15 chr12 120166646 120166778 -1090752 + (TATATG)n Simple_repeat Simple_repeat 3 133 0 3 1501 717 243 124 8 chr12 120166877 120167126 -1090404 - B4A SINE B4 -14 278 1 3 1501 208 170 75 0 chr12 120167633 120167686 -1089844 + CT-rich Low_complexity Low_complexity 3 59 0 3 1501 807 314 45 48 chr12 120167746 120168037 -1089493 - B4A SINE B4 0 292 3 3 1501 806 319 27 19 chr12 120169913 120170172 -1087358 + B4A SINE B4 28 288 -4 3 1501 223 98 39 19 chr12 120170572 120170624 -1086906 + CT-rich Low_complexity Low_complexity 2 54 0 3 1501 925 153 35 7 chr12 120170636 120170781 -1086749 - B1_Mur4 SINE Alu 0 150 2 3 1501 7808 43 3 1 chr12 120171200 120172235 -1085295 + L1_Mus1 LINE L1 5530 6566 -1 3 1501 207 0 0 0 chr12 120172239 120172262 -1085268 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 3 1501 1029 137 0 0 chr12 120172970 120173138 -1084392 + (TTC)n Simple_repeat Simple_repeat 1 168 0 3 1501 605 243 49 77 chr12 120173163 120173346 -1084184 - B3A SINE B2 -18 180 3 3 1501 447 35 0 0 chr12 120173608 120173665 -1083865 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1501 4296 58 24 38 chr12 120173726 120174351 -1083179 + L1_Mus4 LINE L1 6045 6636 0 3 1501 585 180 14 72 chr12 120175067 120175205 -1082325 + RMER12 LTR ERVK 1187 1316 -6 3 1501 925 237 181 42 chr12 120175261 120175592 -1081938 + MTE2a LTR MaLR 3 379 0 3 1501 1811 172 145 11 chr12 120176349 120176714 -1080816 - MTC LTR MaLR 0 421 8 3 1501 3357 94 6 0 chr12 120176714 120177190 -1080340 + L1_Mus4 LINE L1 6157 6635 -1 3 1501 180 77 0 0 chr12 120178156 120178182 -1079348 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1501 576 214 98 0 chr12 120179953 120180065 -1077465 + RSINE1 SINE B4 21 143 -22 3 1501 391 228 0 12 chr12 120180088 120180246 -1077284 + (TA)n Simple_repeat Simple_repeat 2 157 0 3 1501 417 39 0 0 chr12 120180246 120180297 -1077233 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1501 439 253 32 0 chr12 120180624 120180719 -1076811 + RSINE1 SINE B4 27 124 -41 3 1501 309 51 0 0 chr12 120180735 120180774 -1076756 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1501 375 23 0 0 chr12 120180790 120180834 -1076696 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 1501 249 343 48 14 chr12 120181297 120181442 -1076088 - L2 LINE L2 -832 2587 2438 3 1501 260 292 46 33 chr12 120181561 120181713 -1075817 + L1M4 LINE L1 4638 4791 -1355 3 1501 368 250 56 0 chr12 120181756 120181916 -1075614 + L1M4 LINE L1 5137 5305 -841 3 1501 335 250 22 0 chr12 120181994 120182086 -1075444 + MER3 DNA MER1_type 115 208 -1 3 1501 427 281 98 30 chr12 120182086 120182215 -1075315 + B1F1 SINE Alu 10 147 -2 3 1501 21 0 0 0 chr12 120182392 120182413 -1075117 + AT_rich Low_complexity Low_complexity 1 21 0 3 1501 32 26 0 0 chr12 120182460 120182499 -1075031 + AT_rich Low_complexity Low_complexity 1 39 0 3 1501 255 298 21 32 chr12 120182525 120182620 -1074910 - ID2 SINE ID -51 101 4 3 1501 270 238 29 100 chr12 120182555 120182625 -1074905 - tRNA-Ala-GCG tRNA tRNA -7 68 4 3 1501 468 0 0 0 chr12 120182861 120182913 -1074617 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1501 779 226 167 12 chr12 120182946 120183197 -1074333 - B4A SINE B4 -2 290 1 3 1501 3047 81 2 12 chr12 120183728 120184153 -1073377 + BGLII LTR ERVK 1 421 0 3 1501 737 182 192 6 chr12 120185001 120185183 -1072347 - B3 SINE B2 0 216 1 3 1501 459 260 47 119 chr12 120185263 120185499 -1072031 + MTEa LTR MaLR 2 220 -159 3 1501 231 338 92 56 chr12 120185499 120185567 -1071963 + MLT2B4 LTR ERVL 2 316 -240 3 1501 252 0 0 0 chr12 120185688 120185716 -1071814 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1501 616 314 0 0 chr12 120185716 120185840 -1071690 - RSINE1 SINE B4 -41 124 1 3 1501 1830 174 16 137 chr12 120185919 120186175 -1071355 - ORR1D1 LTR MaLR 0 374 166 3 1501 180 0 0 0 chr12 120186175 120186195 -1071335 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1501 1830 174 16 137 chr12 120186195 120186363 -1071167 - ORR1D1 LTR MaLR -209 165 1 3 1501 1508 218 56 48 chr12 120186576 120187079 -1070451 + RLTR18 LTR ERVK 1 616 0 3 1501 448 244 206 25 chr12 120187142 120187302 -1070228 - B4A SINE B4 0 292 104 3 1501 23 33 0 0 chr12 120188452 120188482 -1069048 + AT_rich Low_complexity Low_complexity 1 30 0 3 1501 1377 289 73 44 chr12 120189389 120190005 -1067525 + Lx8 LINE L1 6840 7473 0 3 1501 988 16 0 0 chr12 120190020 120190142 -1067388 + L1Md_A LINE L1 6459 6580 -2 3 1501 180 111 0 0 chr12 120190159 120190186 -1067344 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1501 1990 179 26 29 chr12 120190415 120190800 -1066730 + ORR1C2 LTR MaLR 1 384 0 3 1501 310 316 90 83 chr12 120191367 120191778 -1065752 - L1MB3 LINE L1 -187 5996 5577 3 1501 414 297 46 40 chr12 120191778 120191929 -1065601 - RSINE1 SINE B4 -13 152 1 3 1501 310 316 90 83 chr12 120191929 120192062 -1065468 - L1MB3 LINE L1 -607 5576 5448 3 1502 199 315 112 0 chr12 120193080 120193169 -1064361 - MIRb SINE MIR -94 174 76 3 1502 17006 116 62 20 chr12 120193377 120197953 -1059577 + L1Md_F2 LINE L1 324 5581 -299 3 1502 7921 56 1 1 chr12 120197953 120198948 -1058582 + L1Md_F2 LINE L1 5587 6581 -1 3 1502 23 0 0 0 chr12 120199051 120199074 -1058456 + AT_rich Low_complexity Low_complexity 1 23 0 3 1502 769 164 13 33 chr12 120199132 120199283 -1058247 + B1_Mur2 SINE Alu 2 149 0 3 1502 333 301 132 6 chr12 120199313 120199487 -1058043 + B3A SINE B2 2 197 -1 3 1502 438 249 85 17 chr12 120199510 120199686 -1057844 + L1MA9 LINE L1 5602 5789 -511 3 1502 1114 159 34 53 chr12 120199805 120200071 -1057459 + RMER17C LTR ERVK 125 385 -25 3 1502 842 137 45 7 chr12 120200076 120200230 -1057300 - RMER17C LTR ERVK -250 160 1 3 1502 645 308 92 5 chr12 120200280 120200476 -1057054 - B3 SINE B2 -2 214 2 3 1502 211 182 0 0 chr12 120200516 120200549 -1056981 + polypyrimidine Low_complexity Low_complexity 5 37 0 3 1502 731 269 64 0 chr12 120200549 120200705 -1056825 - B3A SINE B2 -24 174 9 3 1502 186 43 0 0 chr12 120200708 120200731 -1056799 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 3 1502 1067 124 6 0 chr12 120200733 120200910 -1056620 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 4 1502 302 265 124 0 chr12 120200929 120201024 -1056506 - B1F SINE Alu 0 117 15 4 1502 1700 117 0 4 chr12 120201074 120201324 -1056206 + RLTR17 LTR ERVK 300 548 -144 4 1502 947 146 340 4 chr12 120201345 120201587 -1055943 + RMER3D-int LTR ERVK 1133 1455 -1387 4 1502 3501 205 20 34 chr12 120201614 120202563 -1054967 + RMER3D-int LTR ERVK 1907 2842 0 4 1502 2336 122 14 8 chr12 120202563 120202925 -1054605 + RLTR17 LTR ERVK 1 364 -328 4 1502 411 221 94 0 chr12 120202979 120203106 -1054424 + L1MA9 LINE L1 5816 5954 -358 3 1502 470 309 181 14 chr12 120205536 120206273 -1051257 - L1MB4 LINE L1 -4 6179 5341 4 1502 365 224 23 39 chr12 120206336 120206466 -1051064 + RCHARR1 DNA MER1_type 778 905 -69 4 1502 6864 82 8 7 chr12 120206475 120207511 -1050019 - L1_Mus1 LINE L1 -1 6566 5534 4 1502 239 224 216 12 chr12 120207515 120207682 -1049848 - L1MB4 LINE L1 -2201 3939 3739 4 1502 24 67 0 0 chr12 120207743 120207788 -1049742 + AT_rich Low_complexity Low_complexity 1 45 0 4 1502 286 340 68 0 chr12 120208123 120208314 -1049216 - L1MB4 LINE L1 -2427 3713 3510 4 1502 302 247 76 25 chr12 120208319 120208398 -1049132 + B1_Mur1 SINE Alu 57 139 -10 4 1502 252 0 0 0 chr12 120208435 120208463 -1049067 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1502 407 213 107 0 chr12 120209773 120209895 -1047635 - L1MA9 LINE L1 -2 6310 6176 4 1502 324 312 131 7 chr12 120210070 120210215 -1047315 + RSINE1 SINE B4 3 165 0 4 1502 208 286 0 0 chr12 120210215 120210264 -1047266 + (CATATA)n Simple_repeat Simple_repeat 1 49 0 4 1502 1107 90 0 0 chr12 120210318 120210462 -1047068 - B1_Mus1 SINE Alu 0 148 5 4 1502 231 345 0 0 chr12 120210541 120210599 -1046931 - B4A SINE B4 -149 143 86 4 1502 1158 296 77 24 chr12 120210604 120211310 -1046220 - L1MA6 LINE L1 -48 6252 5510 4 1502 31506 73 16 0 chr12 120211516 120216607 -1040923 + L1Md_F2 LINE L1 415 5585 -298 4 1502 7058 94 1 12 chr12 120216608 120217613 -1039917 + L1Md_F2 LINE L1 5587 6580 -2 4 1502 4561 182 17 29 chr12 120218457 120219327 -1038203 - RMER13A LTR ERVK 0 860 1 4 1502 225 217 14 0 chr12 120220472 120220541 -1036989 - L1M4 LINE L1 -2385 3761 3692 4 1502 22 0 0 0 chr12 120220650 120220672 -1036858 + AT_rich Low_complexity Low_complexity 1 22 0 4 1502 1754 268 37 69 chr12 120220672 120221349 -1036181 + Lx8 LINE L1 6566 7220 -253 4 1502 281 351 21 0 chr12 120221356 120221450 -1036080 + RMER15 LTR ERVL 371 466 -109 4 1502 250 246 23 83 chr12 120221474 120221607 -1035923 + Lx8 LINE L1 7341 7465 -8 4 1502 1039 260 87 47 chr12 120221737 120222185 -1035345 - L1MA6 LINE L1 -194 6106 5641 4 1502 755 150 35 0 chr12 120222268 120222528 -1035002 + (TCTA)n Simple_repeat Simple_repeat 1 269 0 4 1502 21 36 0 0 chr12 120222755 120222783 -1034747 + AT_rich Low_complexity Low_complexity 1 28 0 4 1502 22 94 0 0 chr12 120225230 120225294 -1032236 + AT_rich Low_complexity Low_complexity 1 64 0 4 1502 742 341 144 13 chr12 120225436 120225881 -1031649 - MER74A LTR ERVL -125 497 1 4 1502 3713 182 58 96 chr12 120227568 120228506 -1029024 - Lx7 LINE L1 0 7696 6795 4 1502 3493 47 28 2 chr12 120228508 120228933 -1028597 + RLTR10C LTR ERVK 1 436 0 4 1502 853 66 0 0 chr12 120228933 120229039 -1028491 + MMERVK10C-int LTR ERVK 1 106 -7475 4 1502 262 246 105 0 chr12 120229039 120229096 -1028434 + RLTR27 LTR ERVK 213 275 -34 4 1502 820 118 0 0 chr12 120229096 120229215 -1028315 + MMERVK10C-int LTR ERVK 225 343 -7238 4 1502 781 175 4 180 chr12 120229213 120229485 -1028045 + MMERVK10C-int LTR ERVK 729 952 -6629 4 1502 759 186 296 9 chr12 120229574 120229807 -1027723 + RMER16-int LTR ERVK 312 611 -4795 4 1502 298 265 77 18 chr12 120229803 120229936 -1027594 + RMER16-int LTR ERVK 727 819 -4587 4 1502 382 118 6 58 chr12 120229936 120230063 -1027467 + RMER16-int LTR ERVK 1721 1946 -5635 4 1502 568 28 0 0 chr12 120230070 120230141 -1027389 + RMER16-int LTR ERVK 2552 2622 -4959 4 1502 415 55 0 0 chr12 120230141 120230196 -1027334 - RLTR10C LTR ERVK -381 55 1 4 1502 3179 179 28 11 chr12 120230196 120230765 -1026765 - Lx7 LINE L1 -898 6798 6220 4 1502 1064 282 62 28 chr12 120231145 120231503 -1026027 - MTD LTR MaLR -45 374 5 4 1502 1651 189 118 36 chr12 120231795 120232184 -1025346 + MTC LTR MaLR 1 421 0 4 1502 212 143 24 0 chr12 120232237 120232279 -1025251 + CT-rich Low_complexity Low_complexity 1 43 0 4 1502 209 302 55 74 chr12 120232602 120232761 -1024769 - MIRc SINE MIR -104 164 6 4 1502 248 346 91 94 chr12 120235526 120235813 -1021717 + MLT1G1 LTR MaLR 7 292 -287 4 1502 284 346 137 0 chr12 120235870 120236023 -1021507 + MLT1G1 LTR MaLR 406 579 0 4 1502 282 257 200 0 chr12 120236344 120236449 -1021081 + MIRb SINE MIR 67 192 -76 4 1502 2603 31 12 0 chr12 120236948 120237270 -1020260 - L1Md_F3 LINE L1 -1 6583 6258 4 1502 327 25 0 0 chr12 120237498 120237538 -1019992 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1502 281 253 53 0 chr12 120238831 120238906 -1018624 - ID4_ SINE ID -2 81 3 4 1502 281 319 38 44 chr12 120239072 120239290 -1018240 + MIR SINE MIR 22 229 -33 4 1502 7147 93 26 8 chr12 120239424 120239445 -1018085 - Lx3_Mus LINE L1 -1 7008 6987 4 1502 180 0 0 0 chr12 120239445 120239465 -1018065 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1502 7147 93 26 8 chr12 120239465 120240510 -1017020 - Lx3_Mus LINE L1 -23 6986 5923 4 1502 720 257 59 0 chr12 120240511 120240698 -1016832 - B3A SINE B2 0 198 1 4 1502 1155 50 0 0 chr12 120240874 120241014 -1016516 + B1_Mm SINE Alu 1 140 -7 4 1502 594 0 0 0 chr12 120241015 120241081 -1016449 + (CAAAC)n Simple_repeat Simple_repeat 5 70 0 4 1502 318 332 96 5 chr12 120241874 120242062 -1015468 - L2a LINE L2 -36 3390 3186 4 1502 264 315 0 0 chr12 120242290 120242344 -1015186 - AluF_3 SINE Alu -120 191 138 4 1502 1222 184 43 73 chr12 120243873 120244243 -1013287 + RLTR10D LTR ERVK 1 359 0 4 1502 182 393 0 0 chr12 120244407 120244463 -1013067 + L2c LINE L2 3283 3338 -49 4 1502 490 270 29 14 chr12 120244977 120245116 -1012414 - B1F1 SINE Alu -8 141 1 4 1502 275 207 115 0 chr12 120246097 120246184 -1011346 - L1MA8 LINE L1 -11 6280 6184 4 1502 410 279 19 49 chr12 120246202 120246364 -1011166 - L1MA8 LINE L1 -224 6067 5911 4 1502 206 359 55 27 chr12 120246977 120247123 -1010407 - MIRb SINE MIR -46 222 73 4 1502 266 405 31 26 chr12 120247205 120247433 -1010097 + L3 LINE CR1 4204 4432 -57 4 1502 2717 166 144 21 chr12 120248100 120249119 -1008411 + Lx6 LINE L1 5346 6495 -965 4 1502 1547 252 56 79 chr12 120249117 120249634 -1007896 + Lx6 LINE L1 6945 7449 -11 4 1502 901 345 17 24 chr12 120249704 120249998 -1007532 - B4A SINE B4 0 292 1 4 1502 37954 15 2 7 chr12 120250202 120255621 -1001909 + L1Md_A LINE L1 197 5586 -297 4 1502 8723 19 0 0 chr12 120255621 120256617 -1000913 + L1Md_A LINE L1 5587 6582 0 4 1502 888 294 89 28 chr12 120260535 120260766 -996764 - L1MB2 LINE L1 -15 6156 5917 4 1502 1218 219 95 32 chr12 120260766 120261114 -996416 - ORR1D2 LTR MaLR 0 370 1 4 1502 888 294 89 28 chr12 120261114 120261344 -996186 - L1MB2 LINE L1 -255 5916 5668 4 1502 694 252 12 30 chr12 120261351 120261515 -996015 + RSINE1 SINE B4 3 163 -2 4 1502 2663 266 95 42 chr12 120261736 120261783 -995747 - L1MB2 LINE L1 -996 5144 5101 4 1502 324 0 0 0 chr12 120261783 120261819 -995711 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1502 2663 266 95 42 chr12 120261819 120263224 -994306 - L1MB2 LINE L1 -1040 5100 3617 4 1502 824 257 22 58 chr12 120263625 120263989 -993541 - L1MB2 LINE L1 -2521 3619 3269 4 1502 297 0 0 0 chr12 120264296 120264329 -993201 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1502 619 239 11 37 chr12 120264398 120264589 -992941 - B2_Mm2 SINE B2 -9 186 1 4 1502 733 201 171 16 chr12 120264621 120264808 -992722 + B3 SINE B2 1 216 0 4 1502 823 235 61 0 chr12 120264893 120265089 -992441 - B3 SINE B2 -6 210 3 4 1502 25 0 0 0 chr12 120265439 120265464 -992066 + AT_rich Low_complexity Low_complexity 1 25 0 4 1502 233 304 120 0 chr12 120265936 120266028 -991502 - MLT1H LTR MaLR -388 161 59 4 1502 38 51 0 0 chr12 120267636 120267695 -989835 + AT_rich Low_complexity Low_complexity 1 59 0 4 1502 1619 142 160 10 chr12 120268660 120268972 -988558 - RLTR15 LTR ERVK 0 359 1 4 1502 401 235 16 16 chr12 120269009 120269130 -988400 + MYSERV-int LTR ERVK 6428 6548 -2 4 1502 398 182 144 9 chr12 120269132 120269243 -988287 + RLTR15 LTR ERVK 1 126 -233 4 1502 374 273 106 37 chr12 120269345 120269562 -987968 + RLTR15 LTR ERVK 110 341 -18 4 1502 2876 144 70 8 chr12 120269685 120270182 -987348 - RLTR11A LTR ERVK 0 528 1 4 1502 1442 173 132 105 chr12 120270830 120271231 -986299 - MTD LTR MaLR 0 419 8 4 1502 1280 234 86 42 chr12 120271631 120271803 -985727 - L1_Rod LINE L1 -3449 2398 2227 4 1502 186 43 0 0 chr12 120271803 120271826 -985704 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 1502 3857 113 18 0 chr12 120271833 120272389 -985141 - L1_Mus3 LINE L1 -5 6633 6068 4 1502 1280 234 86 42 chr12 120272389 120272637 -984893 - L1_Rod LINE L1 -3625 2222 1951 4 1502 417 171 143 0 chr12 120272798 120272903 -984627 - Lx9 LINE L1 -19 7625 7506 4 1502 464 237 0 0 chr12 120273177 120273268 -984262 - B1_Mur2 SINE Alu -5 144 54 4 1502 678 258 15 58 chr12 120273294 120273500 -984030 - B3A SINE B2 0 198 2 4 1502 827 223 109 0 chr12 120274734 120274927 -982603 + B3 SINE B2 2 215 -1 4 1502 415 310 29 91 chr12 120275802 120276111 -981419 - B4A SINE B4 0 292 3 4 1502 1602 134 105 20 chr12 120276206 120276502 -981028 + ORR1A4 LTR MaLR 1 321 -8 4 1502 241 355 22 11 chr12 120277218 120277309 -980221 - PB1D10 SINE Alu -23 94 3 4 1502 727 155 46 66 chr12 120277342 120277494 -980036 - B1_Mur3 SINE Alu 0 149 1 4 1502 652 256 86 10 chr12 120277757 120277954 -979576 + B4A SINE B4 1 212 -80 4 1502 1052 231 71 46 chr12 120277963 120278286 -979244 - MTE2b LTR MaLR -17 362 32 4 1502 346 283 11 0 chr12 120279135 120279227 -978303 - RSINE1 SINE B4 -62 103 11 4 1502 3347 208 101 49 chr12 120279261 120280574 -976956 - RMER1B Other Other -9 1057 40 4 1502 234 349 11 11 chr12 120280881 120280968 -976562 - MIRb SINE MIR -68 200 114 4 1502 40 21 0 0 chr12 120282323 120282370 -975160 + AT_rich Low_complexity Low_complexity 1 47 0 4 1502 616 292 110 8 chr12 120283803 120284048 -973482 - MLT1B LTR MaLR -79 311 42 4 1502 238 262 82 0 chr12 120284838 120284899 -972631 + MLT1J2 LTR MaLR 245 310 -138 4 1502 1906 70 0 0 chr12 120285899 120286143 -971387 + L1_Mus1 LINE L1 6324 6567 0 4 1502 5103 90 45 0 chr12 120286150 120287487 -970043 + L1Md_F LINE L1 498 1897 -3986 4 1502 805 109 0 15 chr12 120287487 120287617 -969913 + L1Md_F2 LINE L1 6443 6570 -12 4 1502 858 244 6 0 chr12 120287889 120288057 -969473 - ORR1E LTR MaLR -190 169 1 4 1502 190 176 39 0 chr12 120288069 120288120 -969410 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1502 1106 90 0 0 chr12 120288182 120288327 -969203 - B1_Mus2 SINE Alu -2 145 1 4 1502 587 316 150 0 chr12 120288439 120288686 -968844 + B4A SINE B4 1 284 -8 4 1502 1860 204 45 8 chr12 120288698 120289078 -968452 - ORR1B1 LTR MaLR 0 394 1 4 1502 972 18 0 0 chr12 120289227 120289338 -968192 - L1_Mus1 LINE L1 -204 6363 6253 5 1502 235 154 0 49 chr12 120289516 120289557 -967973 - tRNA-Gly-GGA tRNA tRNA -32 43 5 5 1502 243 343 50 0 chr12 120291105 120291204 -966326 + MIRc SINE MIR 132 235 -33 5 1502 438 312 0 0 chr12 120291360 120291456 -966074 + B4A SINE B4 14 109 -183 5 1502 273 312 0 0 chr12 120291669 120291749 -965781 - ID4_ SINE ID -2 81 2 5 1502 560 278 82 16 chr12 120292400 120292583 -964947 + B4A SINE B4 98 292 0 5 1502 200 196 43 0 chr12 120292583 120292629 -964901 + (CATA)n Simple_repeat Simple_repeat 1 48 0 5 1502 243 304 34 25 chr12 120292668 120292693 -964837 - YREP_Mm Unknown Unknown -1487 325 299 5 1502 252 234 0 45 chr12 120292693 120292760 -964770 + ID4_ SINE ID 1 64 -19 5 1502 243 304 34 25 chr12 120292760 120292852 -964678 - YREP_Mm Unknown Unknown -1514 298 208 5 1502 438 289 25 0 chr12 120292761 120292882 -964648 + ID_B1 SINE B4 99 222 -2 5 1502 31 58 0 0 chr12 120294825 120294877 -962653 + AT_rich Low_complexity Low_complexity 1 52 0 5 1502 638 35 12 0 chr12 120295049 120295134 -962396 + (TC)n Simple_repeat Simple_repeat 2 87 0 5 1502 1532 182 61 25 chr12 120295134 120295494 -962036 + ORR1D1 LTR MaLR 2 374 0 5 1502 1071 213 32 14 chr12 120295663 120295882 -961648 + ORR1D1 LTR MaLR 152 374 0 5 1502 711 305 115 30 chr12 120296776 120297107 -960423 - ORR1E LTR MaLR 0 359 1 5 1502 1185 226 68 4 chr12 120297107 120297362 -960168 - MTE-int LTR MaLR -53 1527 1256 5 1502 447 291 51 107 chr12 120297363 120297540 -959990 - MTE-int LTR MaLR -740 840 674 5 1502 615 247 28 22 chr12 120297716 120297898 -959632 - B3A SINE B2 -15 183 1 5 1502 304 242 40 40 chr12 120298652 120298751 -958779 + MLT1A1 LTR MaLR 5 103 -305 5 1502 240 316 39 13 chr12 120298876 120298953 -958577 - LTR33A LTR ERVL -373 147 69 5 1502 208 359 55 49 chr12 120299048 120299212 -958318 + L2c LINE L2 2910 3074 -313 5 1502 623 231 82 0 chr12 120299272 120299406 -958124 + B3A SINE B2 1 145 -53 5 1502 498 96 0 0 chr12 120299416 120299489 -958041 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1502 279 0 0 0 chr12 120299489 120299519 -958011 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1502 356 297 11 0 chr12 120299647 120299738 -957792 - BC1_Mm scRNA scRNA -59 93 2 5 1502 445 264 45 23 chr12 120300125 120300257 -957273 + B1F SINE Alu 15 149 0 5 1502 325 20 40 20 chr12 120300258 120300308 -957222 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 5 1502 188 318 32 0 chr12 120300485 120300548 -956982 - L2c LINE L2 0 3387 3323 5 1502 201 381 63 28 chr12 120301953 120302096 -955434 - L2b LINE L2 -4 3371 3224 5 1502 1590 235 10 108 chr12 120302164 120302579 -954951 - MTE2a LTR MaLR -2 377 4 5 1502 1374 128 8 12 chr12 120303381 120303612 -953918 - Lx2 LINE L1 -69 6928 6728 5 1502 478 305 21 21 chr12 120303920 120304064 -953466 + ID_B1 SINE B4 79 222 -2 5 1502 886 117 0 0 chr12 120305903 120306023 -951507 - ORR1A2 LTR MaLR -86 241 122 5 1502 4129 193 87 34 chr12 120306102 120307052 -950478 - RMER1B Other Other -1 1065 156 5 1502 514 275 21 42 chr12 120307230 120307374 -950156 + RSINE1 SINE B4 4 144 -21 5 1502 343 52 35 0 chr12 120308702 120308760 -948770 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 5 1502 919 239 19 23 chr12 120310215 120310429 -947101 + MTD LTR MaLR 207 419 0 5 1502 443 316 53 0 chr12 120310714 120310828 -946702 + B1F1 SINE Alu 22 141 -8 5 1502 234 333 0 0 chr12 120310842 120310908 -946622 + ID4_ SINE ID 2 67 -16 5 1502 270 0 0 0 chr12 120310941 120310971 -946559 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1502 180 0 0 0 chr12 120311058 120311078 -946452 + (C)n Simple_repeat Simple_repeat 1 20 0 5 1502 272 316 109 29 chr12 120311812 120311949 -945581 - RMER10B LTR ERVL 0 398 251 5 1502 2528 162 98 89 chr12 120312549 120313112 -944418 + RMER15 LTR ERVL 6 573 -2 5 1502 252 0 0 0 chr12 120313272 120313300 -944230 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 5 1502 967 291 165 3 chr12 120314015 120314367 -943163 - MLT-int LTR MaLR -7 1728 1320 5 1502 1092 204 23 0 chr12 120315485 120315705 -941825 - URR1A DNA MER1_type -1 225 1 5 1502 446 399 17 17 chr12 120315836 120316068 -941462 - MamSINE1 SINE tRNA -29 261 30 5 1502 1001 299 60 18 chr12 120316343 120316674 -940856 + MLT1B LTR MaLR 16 360 -30 5 1502 474 18 0 0 chr12 120316716 120316771 -940759 + (CAAAC)n Simple_repeat Simple_repeat 1 55 0 5 1502 32 26 0 0 chr12 120317250 120317289 -940241 + AT_rich Low_complexity Low_complexity 1 39 0 5 1502 893 242 147 48 chr12 120317982 120318065 -939465 - ORR1D1 LTR MaLR 0 374 299 5 1502 976 164 107 19 chr12 120318065 120318270 -939260 + URR1B DNA MER1_type 1 223 -2 5 1502 893 242 147 48 chr12 120318270 120318438 -939092 - ORR1D1 LTR MaLR -76 298 98 5 1502 3024 68 0 0 chr12 120318439 120318839 -938691 - MusHAL1 LINE L1 -2044 668 269 5 1502 284 86 0 0 chr12 120318835 120318870 -938660 + MusHAL1 LINE L1 1553 1587 -1125 5 1502 294 95 0 0 chr12 120318870 120318912 -938618 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1502 1218 20 7 0 chr12 120318912 120319058 -938472 - B1_Mm SINE Alu 0 147 1 5 1502 4110 88 5 16 chr12 120319060 120319078 -938452 + MusHAL1 LINE L1 1576 1593 -1119 5 1502 2110 101 121 60 chr12 120319078 120319458 -938072 + RLTR9D LTR ERVK 1 403 0 5 1502 4110 88 5 16 chr12 120319458 120320063 -937467 + MusHAL1 LINE L1 1594 2192 -520 5 1502 468 77 0 0 chr12 120320122 120320187 -937343 + (GGA)n Simple_repeat Simple_repeat 3 67 0 5 1502 306 0 0 0 chr12 120321613 120321647 -935883 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 5 1502 910 176 202 5 chr12 120322588 120322776 -934754 + URR1B DNA MER1_type 1 225 0 5 1502 336 338 62 7 chr12 120323250 120323396 -934134 - L2a LINE L2 -55 3371 3218 5 187 1028 277 36 80 chr12 120323932 120324156 -933374 + B4A SINE B4 2 231 -61 5 1503 496 286 214 0 chr12 120324156 120324334 -933196 + B3 SINE B2 1 216 0 5 1503 1028 277 36 80 chr12 120324334 120324411 -933119 + B4A SINE B4 232 290 -2 5 1503 281 326 112 0 chr12 120324555 120324644 -932886 + ID_B1 SINE B4 121 219 -5 5 1503 311 194 19 48 chr12 120325153 120325256 -932274 + L1M2 LINE L1 5127 5226 -917 5 1503 5463 44 0 5 chr12 120325406 120326072 -931458 - L1Md_F2 LINE L1 -14 6568 5906 5 1503 244 264 0 19 chr12 120326655 120326709 -930821 + ID4 SINE ID 11 63 -20 5 1503 404 348 8 0 chr12 120327139 120327257 -930273 + ID_B1 SINE B4 67 185 -39 5 1503 180 0 0 0 chr12 120328730 120328750 -928780 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1503 361 292 34 0 chr12 120329546 120329635 -927895 + PB1D10 SINE Alu 19 110 -7 5 1503 3665 42 5 0 chr12 120329902 120330336 -927194 - RLTR10C LTR ERVK 0 436 1 5 1503 213 156 22 0 chr12 120330516 120330561 -926969 + (TATAA)n Simple_repeat Simple_repeat 3 48 0 5 1503 185 325 203 42 chr12 120330985 120331763 -925767 - L2 LINE L2 -457 2962 2060 5 1503 329 310 20 10 chr12 120331837 120331938 -925592 - Zaphod DNA Tip100 0 4031 3930 5 1503 417 95 0 0 chr12 120332435 120332498 -925032 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1503 1335 348 77 14 chr12 120333473 120334161 -923369 - Lx8 LINE L1 -179 7294 6564 5 1503 875 254 89 104 chr12 120334259 120334671 -922859 - RMER20B LTR ERVK -36 480 90 5 1503 422 198 59 0 chr12 120334755 120334856 -922674 - Lx8 LINE L1 -948 6525 6419 5 1503 318 26 0 0 chr12 120335149 120335188 -922342 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1503 3607 55 2 0 chr12 120335508 120335980 -921550 + L1_Mm LINE L1 5114 5586 -297 5 1503 585 249 52 67 chr12 120337189 120337383 -920147 + B3A SINE B2 6 196 -2 5 1503 219 270 88 73 chr12 120337959 120338027 -919503 + ID4 SINE ID 5 73 -10 5 1503 505 169 0 57 chr12 120338851 120338939 -918591 - B2_Mm2 SINE B2 -112 83 1 5 1503 2390 202 25 14 chr12 120339023 120339511 -918019 + RLTR16 LTR ERVK 1 493 -12 5 1503 882 311 168 6 chr12 120339643 120339989 -917541 - MTD LTR MaLR 0 419 18 5 1503 1152 68 7 0 chr12 120340830 120340976 -916554 + B1_Mm SINE Alu 1 147 0 5 1503 1446 138 218 6 chr12 120341269 120341590 -915940 + L1_Mur2 LINE L1 3626 4014 -1866 5 1503 5837 226 35 42 chr12 120341586 120343028 -914502 + Lx6 LINE L1 6029 7460 0 5 1503 219 36 0 0 chr12 120343594 120343622 -913908 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1503 2563 177 115 12 chr12 120344412 120344926 -912604 - Lx5 LINE L1 -91 6959 6393 5 1503 564 136 48 0 chr12 120344927 120345030 -912500 - Lx5 LINE L1 -1134 5916 5809 5 1503 3544 130 37 2 chr12 120345030 120345623 -911907 + Lx5 LINE L1 5186 5799 -78 5 1503 2659 227 60 68 chr12 120345637 120346195 -911335 + L1_Mur3 LINE L1 512 1099 -6629 5 1503 327 25 0 0 chr12 120346195 120346235 -911295 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1503 2659 190 31 46 chr12 120346235 120346769 -910761 + L1_Mur3 LINE L1 1100 1589 -4291 5 1503 252 0 0 0 chr12 120346774 120346802 -910728 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1503 393 168 5 12 chr12 120346804 120346904 -910626 - L1_Mur3 LINE L1 -242 5638 5512 5 1503 2957 105 0 2 chr12 120347208 120347628 -909902 - Lx LINE L1 -6 6648 6230 5 1503 265 283 159 127 chr12 120348753 120349061 -908469 + ORR1E LTR MaLR 30 347 -12 5 1503 367 330 39 0 chr12 120349209 120349312 -908218 + MLT1D LTR MaLR 254 360 -145 5 1503 1471 332 91 25 chr12 120349687 120350705 -906825 - Lx9 LINE L1 -1 7472 6375 5 1503 259 302 110 28 chr12 120351140 120351249 -906281 + L4 LINE RTE 1539 1656 -373 5 1503 867 121 38 0 chr12 120352933 120353065 -904465 + B1_Mus1 SINE Alu 2 138 -10 5 1503 26 0 0 0 chr12 120353160 120353186 -904344 + AT_rich Low_complexity Low_complexity 1 26 0 5 1503 591 74 0 0 chr12 120353187 120353268 -904262 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 5 1503 1462 133 34 48 chr12 120353268 120353536 -903994 - Lx3B LINE L1 -11 6962 6699 5 1503 749 158 122 0 chr12 120353536 120353700 -903830 - L1_Mur1 LINE L1 -3771 2115 1932 5 1503 8311 109 48 8 chr12 120353712 120353730 -903800 - Lx3A LINE L1 0 6981 6967 6 1503 222 62 0 0 chr12 120353730 120353762 -903768 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 1503 8311 109 48 8 chr12 120353762 120354757 -902773 - Lx3A LINE L1 -15 6966 5909 6 1503 486 49 0 0 chr12 120354757 120354818 -902712 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1503 10749 81 9 20 chr12 120354818 120356451 -901079 - Lx3A LINE L1 -1073 5908 4296 6 1503 6268 61 0 4 chr12 120356451 120357243 -900287 - L1Md_F2 LINE L1 -11 6571 5783 6 1503 12309 103 150 1 chr12 120357271 120360449 -897081 - L1Md_F2 LINE L1 0 6582 2892 6 1503 758 89 0 9 chr12 120360449 120360562 -896968 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 6 1503 12309 130 221 1 chr12 120360562 120360643 -896887 - L1Md_F2 LINE L1 -2995 2891 2796 6 1503 34379 67 5 11 chr12 120360906 120367042 -890488 - L1Md_F2 LINE L1 0 6582 489 6 1503 10307 103 24 10 chr12 120367043 120369616 -887914 - L1Md_F2 LINE L1 -3077 2809 196 6 1503 4041 131 13 1 chr12 120369624 120370643 -886887 - L1_Mur1 LINE L1 -3950 1936 904 6 1503 403 268 64 21 chr12 120370645 120370786 -886744 - RLTR41 LTR ERV1 0 446 300 6 1503 706 217 0 0 chr12 120371009 120371161 -886369 - L1_Mur1 LINE L1 -6082 900 749 6 1503 483 163 0 0 chr12 120371305 120371391 -886139 - L1_Mur1 LINE L1 -6225 757 672 6 1503 958 278 169 13 chr12 120371553 120371666 -885864 - ORR1D2 LTR MaLR 0 370 255 6 1503 2187 138 82 45 chr12 120371666 120372069 -885461 - RLTR9B2 LTR ERVK 0 420 3 6 1503 958 278 169 13 chr12 120372069 120372268 -885262 - ORR1D2 LTR MaLR -116 254 9 6 1503 1151 273 77 41 chr12 120372683 120373122 -884408 + RMER5 LTR ERV1 61 515 -19 6 1503 4439 29 0 6 chr12 120373272 120373311 -884219 - L1Md_T LINE L1 0 6582 6544 6 1503 3366 37 2 130 chr12 120373311 120373811 -883719 + RLTR10C LTR ERVK 1 436 0 6 1503 4439 29 0 6 chr12 120373811 120374291 -883239 - L1Md_T LINE L1 -39 6543 6066 6 1503 323 295 10 21 chr12 120374741 120374838 -882692 - MER77 LTR ERVL -57 550 455 6 1503 210 118 0 0 chr12 120375304 120375338 -882192 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1503 4046 103 7 14 chr12 120375340 120375931 -881599 - L1_Mus3 LINE L1 -2 6636 6050 6 1503 265 211 35 0 chr12 120377307 120377364 -880166 + GA-rich Low_complexity Low_complexity 2 60 0 6 1503 579 313 57 80 chr12 120377684 120377948 -879582 - B4A SINE B4 -32 260 3 6 1503 798 249 35 6 chr12 120378858 120379032 -878498 - B3 SINE B2 -5 211 33 6 1503 22 0 0 0 chr12 120379481 120379503 -878027 + AT_rich Low_complexity Low_complexity 1 22 0 6 1503 6002 180 14 1 chr12 120379678 120381129 -876401 - Lx2B LINE L1 -158 6842 5367 6 1503 4341 176 82 13 chr12 120381129 120381406 -876124 - Lx2B LINE L1 -3544 2342 2056 6 1503 333 0 0 0 chr12 120381406 120381443 -876087 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1503 4341 180 77 18 chr12 120381443 120382307 -875223 - Lx2B LINE L1 -3831 2055 1133 6 1503 228 35 0 0 chr12 120382307 120382336 -875194 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1503 1674 214 32 68 chr12 120382336 120382679 -874851 - Lx2B LINE L1 -5852 1132 804 6 1503 1029 157 141 0 chr12 120383006 120383204 -874326 - URR1A DNA MER1_type 0 226 1 6 1503 260 0 57 0 chr12 120383247 120383282 -874248 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 6 1503 249 33 0 0 chr12 120383560 120383590 -873940 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1503 298 342 69 12 chr12 120386633 120386793 -870737 + L1ME1 LINE L1 3958 4126 -2020 6 1503 282 95 0 0 chr12 120386839 120386881 -870649 + (CAA)n Simple_repeat Simple_repeat 1 42 0 6 1503 1681 178 104 12 chr12 120387187 120387523 -870007 + ORR1B2 LTR MaLR 1 367 0 6 1503 25 0 0 0 chr12 120387619 120387644 -869886 + AT_rich Low_complexity Low_complexity 1 25 0 6 1503 1412 229 53 30 chr12 120387765 120388102 -869428 - MTEa LTR MaLR -19 360 16 6 1503 1126 339 107 24 chr12 120388143 120388639 -868891 - MLT1F LTR MaLR -7 541 5 6 1503 1168 292 11 18 chr12 120388713 120388992 -868538 - B4A SINE B4 -12 280 4 6 1503 359 336 80 4 chr12 120388993 120389232 -868298 + L1ME1 LINE L1 5459 5715 -464 6 1503 450 305 0 32 chr12 120389267 120389390 -868140 + RSINE1 SINE B4 15 137 -28 6 1503 270 294 96 60 chr12 120389531 120389730 -867800 + L1ME1 LINE L1 5846 6051 -128 6 1503 661 321 46 65 chr12 120389874 120390290 -867240 - MLT2D LTR ERVL -6 408 1 6 1503 270 313 59 7 chr12 120390290 120390425 -867105 + L1ME3 LINE L1 5988 6129 -33 6 1503 203 236 14 0 chr12 120390551 120390623 -866907 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 6 1503 252 158 13 26 chr12 120391727 120391805 -865725 + CT-rich Low_complexity Low_complexity 2 78 0 6 1503 529 255 6 102 chr12 120392221 120392378 -865152 + ORR1B2 LTR MaLR 1 142 -225 6 1503 450 97 0 0 chr12 120392377 120392439 -865091 + ORR1B2 LTR MaLR 306 367 0 6 1503 309 379 37 53 chr12 120392973 120393077 -864453 - MER5A DNA MER1_type -2 187 82 6 1503 1208 218 46 175 chr12 120393077 120393428 -864102 + ORR1C1 LTR MaLR 1 338 -40 6 1503 869 156 22 0 chr12 120393428 120393563 -863967 + B1_Mur4 SINE Alu 2 139 -11 6 1503 1208 218 46 175 chr12 120393563 120393645 -863885 + ORR1C1 LTR MaLR 339 378 0 6 1503 309 379 37 53 chr12 120393645 120393727 -863803 - MER5A DNA MER1_type -108 81 4 6 1503 961 260 56 52 chr12 120394664 120394932 -862598 + B4 SINE B4 4 272 -20 6 1503 231 253 89 0 chr12 120398062 120398141 -859389 - Kanga1a DNA Tc2 -666 88 3 6 1503 816 229 65 32 chr12 120404346 120404563 -852967 - ID_B1 SINE B4 0 224 1 6 1503 250 272 92 35 chr12 120405444 120405585 -851945 + B1F SINE Alu 1 149 0 6 1503 238 361 20 26 chr12 120407325 120407476 -850054 + MER103 DNA DNA 14 163 -3 6 1503 316 226 178 25 chr12 120407483 120407601 -849929 - HAL1-3A_ME LINE L1 -439 2419 2284 6 1503 244 338 172 24 chr12 120407642 120407851 -849679 + MamSINE1 SINE tRNA 1 240 -50 6 1503 252 0 0 0 chr12 120410171 120410199 -847331 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1503 183 42 0 0 chr12 120411681 120411705 -845825 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1503 279 0 0 0 chr12 120412973 120413004 -844526 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1503 356 294 0 34 chr12 120413695 120413783 -843747 + PB1D10 SINE Alu 1 85 -32 6 1503 693 234 63 37 chr12 120414006 120414197 -843333 - B3 SINE B2 -19 197 2 6 1503 340 301 133 15 chr12 120414607 120414803 -842727 + MIRb SINE MIR 2 220 -48 6 1503 194 301 170 35 chr12 120417225 120417366 -840164 + MIRb SINE MIR 101 260 -8 6 1503 267 31 0 0 chr12 120417680 120417712 -839818 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 6 1503 1211 214 33 74 chr12 120418125 120418489 -839041 + RLTR15 LTR ERVK 1 349 -10 6 1503 726 299 39 47 chr12 120418492 120418853 -838677 + Lx9 LINE L1 7131 7488 -156 6 1503 22 0 0 0 chr12 120418970 120418992 -838538 + AT_rich Low_complexity Low_complexity 1 22 0 6 1503 348 191 32 0 chr12 120419882 120419976 -837554 + (TA)n Simple_repeat Simple_repeat 1 97 0 6 1503 345 93 0 0 chr12 120420015 120420069 -837461 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1503 414 0 0 0 chr12 120420430 120420476 -837054 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1503 380 230 14 0 chr12 120420541 120420615 -836915 + ID4_ SINE ID 2 76 -7 6 1503 456 302 79 28 chr12 120421462 120421714 -835816 + MER121 Unknown Unknown 61 325 -87 6 1503 248 339 55 31 chr12 120422889 120423017 -834513 + ORR1E LTR MaLR 6 136 -223 6 1503 2106 74 51 3 chr12 120423373 120423684 -833846 + L1_Mus3 LINE L1 6313 6638 0 6 1503 1229 113 5 16 chr12 120424516 120424704 -832826 + B2_Mm2 SINE B2 1 186 -9 6 1503 250 0 19 74 chr12 120426554 120426608 -830922 + (TTTTG)n Simple_repeat Simple_repeat 5 55 0 6 1503 705 279 19 0 chr12 120427306 120427460 -830070 - ID_B1 SINE B4 -1 223 67 6 1503 180 0 0 0 chr12 120428006 120428026 -829504 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1503 321 294 62 0 chr12 120429699 120429795 -827735 + PB1D10 SINE Alu 13 111 -6 6 1503 432 279 6 102 chr12 120430909 120431085 -826445 - RSINE1 SINE B4 -2 163 5 6 1503 1009 74 183 6 chr12 120431101 120431265 -826265 - B2_Mm2 SINE B2 -1 194 2 6 1503 309 311 36 65 chr12 120431363 120431671 -825859 - ORR1E LTR MaLR -23 336 1 6 1503 22 0 0 0 chr12 120432441 120432463 -825067 + AT_rich Low_complexity Low_complexity 1 22 0 6 1503 274 313 48 57 chr12 120432718 120432823 -824707 + LTR79 LTR ERVL 139 242 -285 6 1503 962 229 15 5 chr12 120434409 120434615 -822915 + B3 SINE B2 2 209 -7 6 1503 1343 238 83 14 chr12 120434711 120435061 -822469 + ORR1D1 LTR MaLR 1 374 0 6 1503 188 277 0 97 chr12 120435394 120435466 -822064 + L4 LINE RTE 1753 1817 -212 6 1503 282 29 0 0 chr12 120435539 120435574 -821956 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1503 290 203 18 39 chr12 120435797 120435877 -821653 - B1F SINE Alu 0 149 40 6 1503 483 289 35 0 chr12 120436916 120437030 -820500 + RSINE1 SINE B4 48 165 0 6 1503 255 281 77 22 chr12 120437275 120437366 -820164 + ORR1E LTR MaLR 99 194 -165 6 1503 236 246 130 0 chr12 120437470 120437539 -819991 + ORR1E LTR MaLR 296 373 -6 6 1503 206 211 35 63 chr12 120437944 120438086 -819444 + (TTTAA)n Simple_repeat Simple_repeat 5 142 0 6 1503 623 301 41 149 chr12 120438360 120438703 -818827 + MLT1A LTR MaLR 65 370 -4 6 1503 180 77 0 0 chr12 120439003 120439029 -818501 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 6 1503 3375 55 14 2 chr12 120439082 120439522 -818008 + L1_Mus1 LINE L1 6123 6567 0 6 1503 338 326 67 44 chr12 120440423 120440558 -816972 + RSINE1 SINE B4 15 152 -13 6 1503 200 379 0 0 chr12 120442006 120442072 -815458 - L2a LINE L2 -6 3420 3355 6 1503 298 114 0 0 chr12 120442926 120442970 -814560 + U2 snRNA snRNA 1 44 -144 6 1503 450 360 66 0 chr12 120444045 120444348 -813182 - Lx8 LINE L1 -162 7311 6989 6 1503 780 276 37 61 chr12 120444539 120444836 -812694 - B4A SINE B4 -2 290 1 6 1503 235 87 65 0 chr12 120446932 120446978 -810552 + (CAAG)n Simple_repeat Simple_repeat 3 51 0 6 1503 212 0 36 0 chr12 120448513 120448541 -808989 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1503 378 0 0 0 chr12 120448541 120448582 -808948 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1503 492 259 85 14 chr12 120449006 120449147 -808383 + MLT1A1 LTR MaLR 256 406 -2 6 1503 258 281 31 0 chr12 120449427 120449491 -808039 - B1F1 SINE Alu -36 113 48 6 1503 212 122 41 0 chr12 120449939 120449988 -807542 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 7 1503 189 0 0 0 chr12 120450003 120450024 -807506 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1503 558 0 0 0 chr12 120450024 120450085 -807445 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1503 3056 70 7 26 chr12 120450824 120451249 -806281 - L1Md_F2 LINE L1 -1 6581 6165 7 1503 229 298 0 0 chr12 120453182 120453239 -804291 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 7 1503 41 48 0 0 chr12 120454384 120454446 -803084 + AT_rich Low_complexity Low_complexity 1 62 0 7 1503 300 345 69 88 chr12 120454452 120454611 -802919 - RSINE1 SINE B4 0 165 10 7 1504 808 162 202 16 chr12 120455740 120455928 -801602 + URR1B DNA MER1_type 1 223 -2 7 1504 497 247 45 127 chr12 120456944 120457199 -800331 - B4A SINE B4 -35 257 21 7 1504 524 92 10 10 chr12 120458687 120458786 -798744 + L1Md_F2 LINE L1 6479 6577 -5 7 1504 758 185 13 70 chr12 120459020 120459291 -798239 - ORR1D1 LTR MaLR -2 382 9 7 1504 422 292 0 0 chr12 120459897 120460003 -797527 - MLT1A0 LTR MaLR -255 110 5 7 1504 180 0 0 0 chr12 120460014 120460034 -797496 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1504 444 342 174 52 chr12 120460624 120461393 -796137 + L2a LINE L2 139 1001 -2418 7 1504 214 294 144 44 chr12 120461467 120461627 -795903 + L2a LINE L2 3047 3222 -204 7 1504 324 0 0 0 chr12 120462161 120462197 -795333 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1504 288 91 0 0 chr12 120462198 120462242 -795288 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 1504 547 308 102 44 chr12 120462262 120462537 -794993 - B4A SINE B4 0 292 2 7 1504 378 0 0 0 chr12 120462552 120462594 -794936 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1504 349 358 30 7 chr12 120462595 120462730 -794800 + L2a LINE L2 3289 3426 0 7 1504 674 228 0 20 chr12 120466036 120466184 -791346 - B1_Mur1 SINE Alu -1 148 4 7 1504 387 316 61 0 chr12 120467488 120467602 -789928 + RSINE1 SINE B4 45 165 0 7 1504 21 0 0 0 chr12 120467632 120467653 -789877 + AT_rich Low_complexity Low_complexity 1 21 0 7 1504 225 371 38 9 chr12 120468359 120468465 -789065 + MLT1A1 LTR MaLR 26 134 -274 7 1504 706 212 7 33 chr12 120470682 120470833 -786697 - B1_Mur3 SINE Alu -1 148 2 7 1504 455 335 45 0 chr12 120470833 120470875 -786655 - B4 SINE B4 -201 91 43 7 1504 320 290 59 30 chr12 120471216 120471351 -786179 + MIRb SINE MIR 57 195 -73 7 1504 508 358 137 23 chr12 120472536 120473019 -784511 - L2 LINE L2 -865 2554 2017 7 1504 494 304 99 33 chr12 120473292 120473564 -783966 + B4A SINE B4 1 290 -2 7 1504 183 114 0 0 chr12 120473643 120473678 -783852 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1504 258 105 0 0 chr12 120475286 120475324 -782206 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7 1504 201 295 119 37 chr12 120475456 120475565 -781965 - MIRb SINE MIR -47 221 104 7 1504 694 283 89 73 chr12 120479189 120479437 -778093 + B4A SINE B4 2 253 -39 7 1504 715 258 116 72 chr12 120479549 120479912 -777618 - MTE2a LTR MaLR 0 379 1 7 1504 366 23 0 0 chr12 120481192 120481235 -776295 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1504 1768 150 123 21 chr12 120481734 120482067 -775463 - ORR1B2 LTR MaLR 0 367 1 7 1504 240 362 103 8 chr12 120482488 120482605 -774925 + LTR16C LTR ERVL 153 280 -209 7 1504 26 30 0 0 chr12 120482649 120482682 -774848 + AT_rich Low_complexity Low_complexity 1 33 0 7 1504 4919 96 24 14 chr12 120482712 120483132 -774398 - RMER17A LTR ERVK -3 748 322 7 1504 734 73 24 8 chr12 120483132 120483256 -774274 + (GGAGA)n Simple_repeat Simple_repeat 2 127 0 7 1504 4919 96 24 14 chr12 120483256 120483575 -773955 - RMER17A LTR ERVK -430 321 1 7 1504 256 298 68 10 chr12 120483938 120484057 -773473 + MIR SINE MIR 67 205 -63 7 1504 560 276 84 20 chr12 120484091 120484342 -773188 + L1MC2 LINE L1 5494 5760 -573 7 1504 363 338 14 7 chr12 120484340 120484483 -773047 + Lx8 LINE L1 7035 7178 -295 7 1504 351 273 16 0 chr12 120484788 120484928 -772602 + L1MC2 LINE L1 5744 5885 -459 7 1504 2498 197 17 159 chr12 120484932 120484970 -772560 - RMER19C LTR ERVK 0 611 580 7 1504 3336 39 24 2 chr12 120484970 120485379 -772151 - L1Md_F3 LINE L1 0 6584 6167 7 1504 2498 197 17 159 chr12 120485379 120486052 -771478 - RMER19C LTR ERVK -32 579 1 7 1504 667 315 89 5 chr12 120486052 120486457 -771073 + L1MC2 LINE L1 5884 6322 -22 7 1504 519 168 0 0 chr12 120487802 120487897 -769633 + (TA)n Simple_repeat Simple_repeat 2 96 0 7 1504 831 176 44 0 chr12 120488144 120488280 -769250 + B1_Mur4 SINE Alu 3 144 -6 7 1504 7945 35 3 7 chr12 120488397 120488596 -768934 - L1Md_F2 LINE L1 0 6582 6387 7 1504 2375 90 88 26 chr12 120488596 120488983 -768547 + IAPLTR2a LTR ERVK 1 411 0 7 1504 7945 45 3 4 chr12 120488983 120490405 -767125 - L1Md_F2 LINE L1 -196 6386 4964 7 1504 1036 110 0 0 chr12 120490792 120490937 -766593 - B1_Mus2 SINE Alu -1 146 2 7 1504 7686 60 2 0 chr12 120490961 120492374 -765156 - L1_Mus1 LINE L1 -2 6565 5150 7 1504 6473 68 41 3 chr12 120492778 120493665 -763865 + RLTR13B3 LTR ERVK 10 929 0 7 1504 246 32 0 0 chr12 120494787 120494818 -762712 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1504 686 118 0 2 chr12 120494967 120495073 -762457 + B1_Mus2 SINE Alu 34 137 -11 7 1504 1162 203 9 14 chr12 120495136 120495376 -762154 + MTC LTR MaLR 134 421 0 7 1504 1078 65 0 0 chr12 120495462 120495601 -761929 + B1_Mus2 SINE Alu 9 147 0 7 1504 1194 107 16 28 chr12 120496199 120496381 -761149 - B2_Mm2 SINE B2 -14 181 2 7 1504 563 126 0 10 chr12 120496942 120497038 -760492 + (TG)n Simple_repeat Simple_repeat 2 96 0 7 1504 246 372 101 0 chr12 120498110 120498239 -759291 - MIR SINE MIR -106 156 15 7 1504 455 292 19 45 chr12 120499283 120499437 -758093 - MLT1A0 LTR MaLR 0 365 216 7 1504 423 0 0 0 chr12 120502747 120502794 -754736 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1504 392 314 78 7 chr12 120502873 120503014 -754516 - MLT1A0 LTR MaLR -209 156 6 2 1504 607 360 101 39 chr12 120503597 120503999 -753531 - MLT1G3 LTR MaLR -50 529 41 3 1504 275 183 36 12 chr12 120504912 120504995 -752535 + Lx4B LINE L1 6926 7010 -48 4 1504 23 33 0 0 chr12 120505005 120505035 -752495 + AT_rich Low_complexity Low_complexity 1 30 0 5 1504 2019 178 38 89 chr12 120505380 120505850 -751680 + RLTR41 LTR ERV1 1 446 0 6 1504 546 16 0 0 chr12 120506041 120506104 -751426 + (TAAAA)n Simple_repeat Simple_repeat 2 64 0 7 1504 301 316 132 66 chr12 120506725 120506862 -750668 + L2 LINE L2 2607 2744 -675 8 1504 1408 162 62 154 chr12 120506862 120507285 -750245 + ORR1C2 LTR MaLR 1 384 0 9 1504 301 316 132 66 chr12 120507285 120507496 -750034 + L2 LINE L2 2745 2977 -442 8 1504 882 189 11 76 chr12 120509712 120509908 -747622 + RMER17C LTR ERVK 1 184 -226 1 1504 922 81 0 54 chr12 120509908 120510092 -747438 + (TTCTC)n Simple_repeat Simple_repeat 3 176 0 1 1504 1084 192 28 35 chr12 120510092 120510410 -747120 + RMER17C LTR ERVK 84 399 -11 1 1504 237 83 0 0 chr12 120510410 120510446 -747084 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1504 565 292 92 48 chr12 120510456 120510729 -746801 - Lx8 LINE L1 -25 7448 7164 1 1504 533 313 7 26 chr12 120512855 120513006 -744524 + RSINE1 SINE B4 4 151 -14 1 1504 557 28 14 0 chr12 120513103 120513174 -744356 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1504 23 33 0 0 chr12 120514107 120514137 -743393 + AT_rich Low_complexity Low_complexity 1 30 0 1 1504 252 0 0 0 chr12 120514249 120514277 -743253 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1504 201 328 66 0 chr12 120514432 120514493 -743037 - MIR3 SINE MIR -36 172 108 1 1504 301 296 73 36 chr12 120515278 120515415 -742115 - MER67A LTR ERV1 -265 278 137 2 1504 22 35 0 0 chr12 120515631 120515660 -741870 + AT_rich Low_complexity Low_complexity 1 29 0 2 1504 2610 152 74 8 chr12 120515660 120516144 -741386 - Lx4B LINE L1 0 7058 6543 2 1504 3583 262 24 30 chr12 120517536 120518533 -738997 - RodERV21-int LTR ERV1 -2832 2159 1169 2 1504 984 264 35 29 chr12 120518687 120519034 -738496 - RodERV21-int LTR ERV1 -3913 1078 730 2 1504 206 255 0 21 chr12 120519646 120519694 -737836 + (TGG)n Simple_repeat Simple_repeat 2 48 0 2 1504 22 35 0 0 chr12 120520129 120520158 -737372 + AT_rich Low_complexity Low_complexity 1 29 0 2 1504 246 32 0 0 chr12 120520191 120520222 -737308 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1504 2856 190 133 41 chr12 120520438 120520506 -737024 + RLTR40 LTR ERVK 12 93 -724 2 1504 342 0 0 0 chr12 120520506 120520544 -736986 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1504 2856 190 133 41 chr12 120520544 120520694 -736836 + RLTR40 LTR ERVK 94 234 -583 2 1504 4246 89 8 7 chr12 120520694 120521282 -736248 - L1_Mus4 LINE L1 0 6636 6048 2 1504 2856 190 133 41 chr12 120521282 120521604 -735926 + RLTR40 LTR ERVK 235 594 -223 2 1504 251 28 28 0 chr12 120521604 120521640 -735890 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1504 2856 190 133 41 chr12 120521640 120521826 -735704 + RLTR40 LTR ERVK 595 805 -12 2 1504 270 0 0 0 chr12 120522712 120522742 -734788 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1504 198 103 0 0 chr12 120522747 120522776 -734754 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1504 36059 43 0 2 chr12 120524047 120530177 -727353 - L1Md_T LINE L1 0 6585 374 3 1504 1010 286 94 21 chr12 120530181 120530510 -727020 - ORR1E LTR MaLR -6 353 1 3 1504 180 0 0 0 chr12 120531520 120531540 -725990 + (TTAGGG)n Simple_repeat Simple_repeat 6 25 0 3 1504 1443 69 5 0 chr12 120531964 120532152 -725378 + B2_Mm1t SINE B2 2 190 -3 3 1504 288 172 0 0 chr12 120532766 120532824 -724706 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1504 351 0 0 0 chr12 120532835 120532874 -724656 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 3 1504 1276 228 160 17 chr12 120532913 120533270 -724260 + MTD LTR MaLR 4 411 -8 3 1504 405 240 54 20 chr12 120533322 120533471 -724059 + L1M4c LINE L1 1752 1905 -4479 4 1504 575 344 19 0 chr12 120533489 120533646 -723884 + RSINE1 SINE B4 6 165 0 4 1504 688 260 49 54 chr12 120533655 120534082 -723448 + L1M4c LINE L1 1992 2416 -3968 4 1504 394 212 109 36 chr12 120534093 120534230 -723300 - Lx9 LINE L1 -164 7480 7334 4 1504 272 181 157 0 chr12 120534230 120534313 -723217 + Lx9 LINE L1 7542 7637 -7 4 1504 265 64 20 41 chr12 120534378 120534427 -723103 + (GGGA)n Simple_repeat Simple_repeat 2 49 0 4 1504 261 253 0 151 chr12 120534444 120534537 -722993 + B1F2 SINE Alu 6 84 -65 4 1504 410 256 87 22 chr12 120534675 120534859 -722671 + L1M4c LINE L1 3867 4062 -2320 4 1504 743 238 56 53 chr12 120534884 120535225 -722305 - L1MA8 LINE L1 -33 6258 5917 4 1504 766 287 84 27 chr12 120535255 120535706 -721824 + L1M4c LINE L1 4048 4524 -1852 4 1504 2094 31 4 0 chr12 120535708 120535968 -721562 - RLTR10-int LTR ERVK -1686 301 41 4 1504 2614 28 2 248 chr12 120535978 120536495 -721035 - RLTR10 LTR ERVK 0 390 1 4 1504 16347 22 1 0 chr12 120536497 120538440 -719090 - RLTR10-int LTR ERVK -3 1984 41 4 1504 2614 28 2 248 chr12 120538450 120538967 -718563 - RLTR10 LTR ERVK 0 390 1 4 1504 495 303 97 22 chr12 120538988 120539115 -718415 + L1M4c LINE L1 4567 4706 -1676 4 1504 1030 127 57 17 chr12 120539115 120539291 -718239 + B2_Mm2 SINE B2 5 187 -8 4 1504 495 303 97 22 chr12 120539291 120539484 -718046 + L1M4c LINE L1 4707 4911 -1471 4 1504 557 271 96 72 chr12 120540177 120540278 -717252 + L1M4c LINE L1 5137 5235 -1147 4 1504 696 198 154 31 chr12 120540278 120540440 -717090 + B3A SINE B2 1 182 -16 4 1504 557 271 96 72 chr12 120540440 120540808 -716722 + L1M4c LINE L1 5236 5617 -765 4 1504 317 218 89 18 chr12 120540864 120540976 -716554 + L1M4c LINE L1 5843 5962 -457 4 1504 198 309 37 12 chr12 120541164 120541246 -716284 - L2 LINE L2 -1057 2362 2279 4 1504 710 121 9 0 chr12 120541427 120541543 -715987 + (TCTCCC)n Simple_repeat Simple_repeat 4 120 0 5 1504 915 149 86 19 chr12 120541696 120541904 -715626 - ORR1B1 LTR MaLR -8 386 109 5 1504 279 140 20 0 chr12 120541904 120541954 -715576 + RLTR11A2 LTR ERVK 1 51 -476 5 1504 1435 135 15 45 chr12 120541949 120542213 -715317 - RLTR11A2 LTR ERVK -271 256 1 5 1504 219 36 0 0 chr12 120543000 120543028 -714502 + (CAAAAA)n Simple_repeat Simple_repeat 5 32 0 5 1504 5699 51 8 3 chr12 120543893 120544705 -712825 - L1Md_F2 LINE L1 0 6582 5719 5 1504 2117 56 0 0 chr12 120544701 120544971 -712559 + L1Md_F2 LINE L1 5409 5678 -205 5 1504 1182 41 14 0 chr12 120545174 120545319 -712211 - B1_Mus1 SINE Alu 0 148 2 5 1504 1277 195 26 30 chr12 120545357 120545621 -711909 + RMER19A LTR ERVK 475 737 0 5 1504 198 67 67 0 chr12 120546011 120546056 -711474 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 5 1504 1046 204 171 14 chr12 120546548 120546860 -710670 + ORR1A4 LTR MaLR 3 374 0 5 1504 318 26 0 0 chr12 120548736 120548775 -708755 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 1504 1145 64 0 0 chr12 120548777 120548918 -708612 - B1_Mm SINE Alu -6 141 1 6 1504 366 23 0 0 chr12 120550974 120551017 -706513 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1504 261 57 0 0 chr12 120551017 120551051 -706479 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1504 22 56 0 0 chr12 120552605 120552641 -704889 + AT_rich Low_complexity Low_complexity 1 36 0 6 1504 496 366 26 0 chr12 120552727 120552880 -704650 + RSINE1 SINE B4 2 158 -7 6 1504 393 22 0 0 chr12 120552881 120552927 -704603 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1504 229 286 107 61 chr12 120553068 120553329 -704201 - L1MC4 LINE L1 -375 7667 7395 6 1504 514 254 146 8 chr12 120553368 120553622 -703908 - L1MC4 LINE L1 -983 7059 6771 6 1504 221 254 30 0 chr12 120554041 120554108 -703422 + GA-rich Low_complexity Low_complexity 4 72 0 6 1504 7186 80 25 2 chr12 120554154 120555218 -702312 - L1_Mus3 LINE L1 -7 6631 5543 6 1504 582 54 0 0 chr12 120555746 120555820 -701710 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 7 1504 1140 75 0 0 chr12 120555820 120555967 -701563 - B1_Mus2 SINE Alu 0 147 1 7 1504 377 278 91 37 chr12 120557177 120557364 -700166 + Tigger14a DNA MER2_type 127 323 -1 7 1504 283 284 95 0 chr12 120558109 120558204 -699326 + MER20 DNA MER1_type 112 215 -4 7 1504 3161 57 2 10 chr12 120558204 120558615 -698915 + L1Md_F2 LINE L1 6163 6570 -12 7 1504 30 59 0 0 chr12 120559494 120559545 -697985 + AT_rich Low_complexity Low_complexity 1 51 0 7 1504 326 93 0 36 chr12 120559545 120559601 -697929 + (TATG)n Simple_repeat Simple_repeat 3 56 0 7 1504 524 340 13 13 chr12 120559601 120559759 -697771 - RSINE1 SINE B4 0 165 8 7 1504 212 204 20 0 chr12 120559855 120559904 -697626 - B1F SINE Alu -1 148 99 7 1504 189 265 182 10 chr12 120559964 120560063 -697467 - L2 LINE L2 -1008 2411 2296 7 1504 771 286 66 41 chr12 120561405 120561798 -695732 - L1MA10 LINE L1 -60 6274 5872 8 1504 675 204 65 14 chr12 120563306 120563445 -694085 - B1_Mur2 SINE Alu -2 147 2 8 1504 285 51 0 0 chr12 120563451 120563490 -694040 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1504 1130 64 0 0 chr12 120563490 120563630 -693900 - B1_Mus1 SINE Alu -8 140 1 8 1504 701 65 0 0 chr12 120563631 120563724 -693806 - 4.5SRNA scRNA scRNA -1 93 1 8 1504 295 234 16 0 chr12 120563786 120563850 -693680 + MER58B DNA MER1_type 277 341 0 8 1504 2858 80 7 10 chr12 120564123 120564526 -693004 - L1Md_F2 LINE L1 0 6582 6181 8 1504 1276 61 6 0 chr12 120564526 120564690 -692840 + L1Md_F2 LINE L1 6009 6173 -409 8 1504 414 100 0 0 chr12 120564899 120564959 -692571 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1504 249 231 165 0 chr12 120565213 120565304 -692226 + LTR41 LTR ERVL 646 751 -17 8 1504 26 30 0 0 chr12 120566408 120566441 -691089 + AT_rich Low_complexity Low_complexity 1 33 0 8 1504 273 374 0 0 chr12 120566557 120566640 -690890 - ID4 SINE ID 0 83 1 9 1504 25 51 0 0 chr12 120566787 120566826 -690704 + AT_rich Low_complexity Low_complexity 1 39 0 9 1504 750 273 127 62 chr12 120567542 120567850 -689680 - MLT2B3 LTR ERVL 0 554 227 9 1504 1163 274 121 16 chr12 120567929 120568292 -689238 + MTD LTR MaLR 5 405 -14 9 1504 216 0 0 0 chr12 120568680 120568704 -688826 + (CAAAT)n Simple_repeat Simple_repeat 2 25 0 9 1504 3610 227 80 88 chr12 120568838 120569827 -687703 + RMER1A Other Other 1 780 -286 9 1504 4758 78 32 0 chr12 120569827 120570478 -687052 - L1_Mus1 LINE L1 0 6567 5896 9 1504 3610 221 97 32 chr12 120570478 120570630 -686900 + RMER1A Other Other 719 869 -161 9 1504 486 0 0 0 chr12 120570630 120570684 -686846 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1504 3610 222 97 34 chr12 120570684 120570798 -686732 + RMER1A Other Other 870 1065 -1 9 1504 1929 195 83 14 chr12 120570817 120571248 -686282 - Lx7 LINE L1 -454 7242 6782 9 1504 24 0 0 0 chr12 120572641 120572665 -684865 + AT_rich Low_complexity Low_complexity 1 24 0 9 1504 243 0 0 0 chr12 120573297 120573324 -684206 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1504 34607 82 10 10 chr12 120574956 120581018 -676512 - L1Md_F2 LINE L1 -47 6535 466 1 1504 24 0 0 0 chr12 120581045 120581069 -676461 + AT_rich Low_complexity Low_complexity 1 24 0 1 1504 374 143 13 0 chr12 120581447 120581524 -676006 + GA-rich Low_complexity Low_complexity 3 80 0 1 1504 183 80 0 0 chr12 120582684 120582709 -674821 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1504 1699 163 67 6 chr12 120582814 120583094 -674436 - RLTR15 LTR ERVK -11 348 49 1 1504 225 0 0 0 chr12 120583094 120583119 -674411 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1504 1699 163 67 6 chr12 120583119 120583166 -674364 - RLTR15 LTR ERVK -311 48 2 1 1504 33 43 0 0 chr12 120583173 120583220 -674310 + AT_rich Low_complexity Low_complexity 1 47 0 1 1504 1077 301 103 24 chr12 120583407 120583785 -673745 + Lx8 LINE L1 6936 7343 -130 1 1504 480 289 37 0 chr12 120584297 120584432 -673098 - B1F SINE Alu -6 143 4 1 23 35277 45 2 3 chr12 120584687 120589963 -667567 + L1Md_T LINE L1 223 5589 -297 1 1505 8433 31 1 0 chr12 120589963 120590958 -666572 + L1Md_T LINE L1 5590 6585 0 1 1505 219 69 0 0 chr12 120592179 120592208 -665322 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1505 347 317 137 11 chr12 120592273 120592455 -665075 + MIR SINE MIR 4 208 -54 1 1505 426 296 61 18 chr12 120592504 120592669 -664861 - RMER15 LTR ERVL -7 568 397 1 1505 322 138 36 48 chr12 120594383 120594467 -663063 - Lx3C LINE L1 -2 6974 6892 1 1505 1008 144 16 37 chr12 120594495 120594682 -662848 - Lx2B LINE L1 -518 6482 6300 1 1505 2170 186 111 7 chr12 120594693 120595136 -662394 + Lx2B LINE L1 6499 6987 -13 1 1505 22 0 0 0 chr12 120596496 120596518 -661012 + AT_rich Low_complexity Low_complexity 1 22 0 1 1505 969 251 5 5 chr12 120597207 120597423 -660107 + B3 SINE B2 1 216 0 1 1505 720 302 5 0 chr12 120597587 120597792 -659738 + B3 SINE B2 5 210 -6 1 1505 233 391 0 43 chr12 120598180 120598319 -659211 + L2 LINE L2 1946 2078 -1341 1 1505 21 0 0 0 chr12 120598424 120598445 -659085 + AT_rich Low_complexity Low_complexity 1 21 0 1 1505 941 300 73 42 chr12 120598577 120598890 -658640 - MTE2b LTR MaLR -40 339 17 1 1505 1108 181 133 0 chr12 120599251 120599477 -658053 - Lx9 LINE L1 -328 7316 7061 1 1505 655 152 249 5 chr12 120599479 120599684 -657846 + Lx9 LINE L1 7389 7643 -1 1 1505 21 0 0 0 chr12 120599685 120599706 -657824 + AT_rich Low_complexity Low_complexity 1 21 0 1 1505 3005 40 59 3 chr12 120599980 120600355 -657175 - MTA_Mm LTR MaLR 0 396 1 1 1505 267 380 104 26 chr12 120601835 120602027 -655503 - MIR SINE MIR -9 253 47 1 1505 369 0 0 0 chr12 120602886 120602927 -654603 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1505 296 321 50 71 chr12 120604040 120604181 -653349 - L2a LINE L2 -5 3421 3245 1 1505 303 254 0 0 chr12 120604385 120604452 -653078 - L1MA5 LINE L1 -407 5893 5827 1 1505 21 0 0 0 chr12 120604544 120604565 -652965 + AT_rich Low_complexity Low_complexity 1 21 0 1 1505 35 24 0 0 chr12 120605071 120605113 -652417 + AT_rich Low_complexity Low_complexity 1 42 0 1 1505 3229 216 46 3 chr12 120605626 120606262 -651268 + Lx5 LINE L1 6388 7050 0 1 1505 181 342 66 0 chr12 120606346 120606422 -651108 - MIR SINE MIR -5 257 177 1 1505 2117 179 62 3 chr12 120606496 120606882 -650648 - RMER19B LTR ERVK 0 902 494 1 1505 435 105 66 0 chr12 120606850 120606926 -650604 - RMER19B LTR ERVK -821 81 1 1 1505 3155 64 2 7 chr12 120607960 120608383 -649147 - BGLII LTR ERVK 0 421 1 1 1505 1332 80 10 5 chr12 120609117 120609317 -648213 - L1_Mus3 LINE L1 -2 6636 6436 1 1505 603 348 98 0 chr12 120610384 120610660 -646870 - MER2 DNA MER2_type -22 323 21 1 1505 24 0 0 0 chr12 120610912 120610936 -646594 + AT_rich Low_complexity Low_complexity 1 24 0 1 1505 241 340 63 11 chr12 120611117 120611212 -646318 + RLTR9A2 LTR ERVK 14 113 -270 1 1505 225 250 20 111 chr12 120611590 120611689 -645841 - LTR90A LTR LTR -47 929 840 1 1505 226 348 102 30 chr12 120612381 120612547 -644983 + MIRb SINE MIR 36 213 -55 1 1505 945 203 4 38 chr12 120613808 120614044 -643486 + Lx2B LINE L1 6773 7000 0 1 1505 23 33 0 0 chr12 120614985 120615015 -642515 + AT_rich Low_complexity Low_complexity 1 30 0 1 1505 186 293 0 0 chr12 120615185 120615226 -642304 - L4 LINE RTE -951 1078 1038 1 1505 24 53 0 0 chr12 120615888 120615926 -641604 + AT_rich Low_complexity Low_complexity 1 38 0 1 1505 549 288 79 55 chr12 120616480 120616682 -640848 + B3 SINE B2 1 207 -9 1 1505 407 262 0 16 chr12 120618284 120618412 -639118 - L1_Mur3 LINE L1 -4218 1662 1537 1 1505 898 180 1252 28 chr12 120618396 120618419 -639111 - L1_Mm LINE L1 -514 5666 5621 1 1505 647 25 12 0 chr12 120618419 120618500 -639030 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1 1505 898 105 38 0 chr12 120618500 120618625 -638905 - L1_Mm LINE L1 -263 5620 5491 1 1505 7633 91 8 7 chr12 120618621 120619840 -637690 + L1_Mus3 LINE L1 5419 6638 0 1 1505 253 341 0 0 chr12 120620455 120620540 -636990 + L2a LINE L2 3333 3417 -9 1 1505 204 200 0 0 chr12 120620688 120620723 -636807 + (CACTC)n Simple_repeat Simple_repeat 4 38 0 1 1505 402 334 110 74 chr12 120621463 120621854 -635676 + MLT1D LTR MaLR 22 426 -79 1 1505 440 312 39 0 chr12 120621895 120622023 -635507 - RSINE1 SINE B4 -30 135 3 1 1505 30 0 0 0 chr12 120622063 120622093 -635437 + AT_rich Low_complexity Low_complexity 1 30 0 1 1505 473 47 16 0 chr12 120622863 120622927 -634603 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 1505 3246 93 2 2 chr12 120622931 120623372 -634158 + Lx3_Mus LINE L1 6214 6654 -355 1 1505 248 172 17 0 chr12 120623655 120623713 -633817 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1505 280 404 88 19 chr12 120625782 120625941 -631589 - LTR81A LTR ERV1? -431 919 750 1 1505 741 244 237 31 chr12 120627126 120627350 -630180 + B4A SINE B4 1 270 -22 1 1505 444 82 0 0 chr12 120627361 120627422 -630108 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1505 191 61 0 29 chr12 120628542 120628576 -628954 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 1505 214 197 202 16 chr12 120629561 120629665 -627865 + MIR SINE MIR 15 149 -119 1 1505 689 264 52 30 chr12 120629770 120630039 -627491 + L1MB2 LINE L1 5893 6167 -4 1 1505 317 364 0 18 chr12 120631971 120632083 -625447 - B4A SINE B4 -8 284 175 1 1505 263 254 18 0 chr12 120632142 120632197 -625333 + B4 SINE B4 121 176 -116 1 1505 191 61 0 29 chr12 120632769 120632803 -624727 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1505 1065 219 101 40 chr12 120633067 120633343 -624187 - Lx4B LINE L1 -6 7052 6760 1 1505 242 230 90 22 chr12 120633643 120633732 -623798 - L1M5 LINE L1 -599 5641 5547 1 1505 186 128 0 0 chr12 120634179 120634218 -623312 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1505 1096 189 163 0 chr12 120634243 120634476 -623054 + Lx4B LINE L1 6784 7054 -4 1 1505 24 0 0 0 chr12 120635123 120635147 -622383 + AT_rich Low_complexity Low_complexity 1 24 0 1 1505 3099 232 119 43 chr12 120635147 120636100 -621430 - Lx9 LINE L1 -173 7471 6447 1 1505 514 306 47 20 chr12 120638730 120638880 -618650 + RSINE1 SINE B4 3 156 -9 1 1505 667 173 103 22 chr12 120639742 120639878 -617652 - B1_Mur2 SINE Alu -1 148 2 1 1505 278 259 41 74 chr12 120640324 120640408 -617122 + MTE2a LTR MaLR 5 82 -297 1 1505 188 35 35 0 chr12 120640408 120640437 -617093 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1505 278 259 41 74 chr12 120640437 120640473 -617057 + MTE2a LTR MaLR 83 120 -259 1 1505 446 186 12 0 chr12 120640449 120640535 -616995 + MTE2a LTR MaLR 293 379 0 1 1505 307 264 114 15 chr12 120640663 120640794 -616736 + B1F1 SINE Alu 1 144 -5 1 1505 893 119 211 22 chr12 120642947 120643127 -614403 + Lx LINE L1 6426 6639 -15 1 1505 369 0 0 0 chr12 120643127 120643168 -614362 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 1505 25 0 0 0 chr12 120644585 120644610 -612920 + AT_rich Low_complexity Low_complexity 1 25 0 1 1505 772 254 31 36 chr12 120644615 120644811 -612719 - B3A SINE B2 0 198 4 1 1505 851 156 14 0 chr12 120645519 120645684 -611846 + RMER6A LTR ERVK 1 242 -514 1 1505 1114 239 69 61 chr12 120646396 120646757 -610773 - Lx8 LINE L1 -29 7444 7081 1 1505 3587 149 66 8 chr12 120646773 120647468 -610062 + RMER6A LTR ERVK 1 756 0 1 1505 2755 302 39 38 chr12 120647478 120647576 -609954 - Lx8 LINE L1 -412 7061 6963 1 1505 2034 122 51 0 chr12 120647576 120647887 -609643 - ORR1A2 LTR MaLR 0 327 1 1 1505 2755 302 39 38 chr12 120647887 120648747 -608783 - Lx8 LINE L1 -511 6962 6103 1 1505 295 306 70 35 chr12 120649023 120649138 -608392 - PB1D7 SINE Alu 0 120 2 1 1505 226 254 16 33 chr12 120649373 120649434 -608096 + GA-rich Low_complexity Low_complexity 2 61 0 1 1505 423 348 118 47 chr12 120650541 120650929 -606601 - MLT1H1 LTR MaLR -3 624 137 1 1505 182 118 29 0 chr12 120650948 120650982 -606548 + (TATAA)n Simple_repeat Simple_repeat 3 37 0 1 1505 938 92 0 67 chr12 120650995 120651159 -606371 - L1Md_F2 LINE L1 0 6582 6430 1 1505 24 53 0 0 chr12 120651367 120651405 -606125 + AT_rich Low_complexity Low_complexity 1 38 0 1 1505 31 0 0 0 chr12 120651478 120651509 -606021 + AT_rich Low_complexity Low_complexity 1 31 0 1 1505 614 287 26 32 chr12 120651509 120651664 -605866 - RSINE1 SINE B4 -2 163 10 1 1505 24 32 0 0 chr12 120651674 120651705 -605825 + AT_rich Low_complexity Low_complexity 1 31 0 1 1505 316 320 86 59 chr12 120652231 120652417 -605113 + LTR33A LTR ERVL 320 510 -10 1 1505 259 355 21 28 chr12 120654566 120654708 -602822 - MLT1H1 LTR MaLR -270 141 1 1 1505 32 0 0 0 chr12 120655076 120655108 -602422 + AT_rich Low_complexity Low_complexity 1 32 0 1 1505 194 355 48 40 chr12 120655531 120655657 -601873 + MIR SINE MIR 74 200 -62 1 1505 609 172 361 6 chr12 120656990 120657148 -600382 + B3 SINE B2 3 216 0 1 1505 21 0 0 0 chr12 120657345 120657366 -600164 + AT_rich Low_complexity Low_complexity 1 21 0 1 1505 283 335 64 32 chr12 120657632 120657789 -599741 - MLT1E3 LTR MaLR -11 613 452 2 1505 357 241 47 17 chr12 120657851 120657977 -599553 - L1_Rod LINE L1 -599 5281 5119 2 1505 270 252 173 75 chr12 120658304 120658437 -599093 - MLT1E1A LTR MaLR -528 152 7 2 1505 3504 114 116 5 chr12 120659892 120660463 -597067 + Lx LINE L1 6009 6642 -12 2 1505 552 30 0 0 chr12 120660467 120660533 -596997 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1505 498 279 13 67 chr12 120660956 120661106 -596424 + RMER15 LTR ERVL 329 470 -105 2 1505 423 0 0 0 chr12 120661131 120661178 -596352 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1505 212 135 0 51 chr12 120661184 120661223 -596307 + polypurine Low_complexity Low_complexity 3 39 0 2 1505 23 54 0 0 chr12 120661907 120661944 -595586 + AT_rich Low_complexity Low_complexity 1 37 0 2 1505 643 289 152 47 chr12 120662160 120662606 -594924 - L1ME1 LINE L1 -175 6004 5512 2 1505 239 287 67 22 chr12 120662606 120662695 -594835 + MIRb SINE MIR 29 121 -147 2 1505 1537 236 75 3 chr12 120663135 120663480 -594050 + ORR1D2 LTR MaLR 1 370 0 2 1505 21 36 0 0 chr12 120663531 120663559 -593971 + AT_rich Low_complexity Low_complexity 1 28 0 2 1505 234 343 15 0 chr12 120663560 120663627 -593903 - PB1D10 SINE Alu -48 69 2 2 1505 351 113 0 0 chr12 120663850 120663903 -593627 + (TATG)n Simple_repeat Simple_repeat 4 56 0 2 1505 510 297 37 25 chr12 120663904 120664066 -593464 - B3 SINE B2 -13 203 40 2 1505 209 260 58 68 chr12 120664436 120664539 -592991 - L2c LINE L2 -7 3380 3279 2 1505 302 320 13 0 chr12 120666091 120666169 -591361 - ID4_ SINE ID 0 83 5 2 1505 4697 63 4 1 chr12 120666242 120667203 -590327 - L1VL4 LINE L1 -2097 1462 500 2 1505 475 338 34 4 chr12 120667215 120667450 -590080 - L1VL4 LINE L1 -5871 431 190 2 1505 444 280 20 0 chr12 120667451 120667551 -589979 + ID_B1 SINE B4 93 194 -30 2 1505 25 0 0 0 chr12 120667653 120667678 -589852 + AT_rich Low_complexity Low_complexity 1 25 0 2 1505 393 179 0 0 chr12 120667975 120668059 -589471 + GA-rich Low_complexity Low_complexity 3 86 0 2 1505 22 0 0 0 chr12 120668240 120668262 -589268 + AT_rich Low_complexity Low_complexity 1 22 0 2 1505 245 188 36 22 chr12 120668492 120668565 -588965 - Arthur1C DNA Tip100 -293 70 1 2 1505 5562 40 0 0 chr12 120668982 120669652 -587878 - L1Md_T LINE L1 0 6582 5913 2 1505 27 29 0 0 chr12 120670225 120670259 -587271 + AT_rich Low_complexity Low_complexity 1 34 0 2 1505 492 18 0 0 chr12 120670374 120670431 -587099 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1505 399 73 0 0 chr12 120670582 120670637 -586893 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2 1505 35 41 0 0 chr12 120671022 120671071 -586459 + AT_rich Low_complexity Low_complexity 1 49 0 2 1505 1181 113 54 0 chr12 120671081 120671285 -586245 - L1_Mus3 LINE L1 -7 6631 6417 2 1505 19643 172 135 5 chr12 120672004 120676310 -581220 - Lx4B LINE L1 -6 7052 2050 2 1505 396 0 0 0 chr12 120676310 120676354 -581176 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1505 19643 169 111 8 chr12 120676354 120677526 -580004 - Lx4B LINE L1 -3828 2049 868 2 1505 301 322 100 7 chr12 120678746 120678896 -578634 + MER5A DNA MER1_type 3 166 -23 2 1505 229 217 0 77 chr12 120679616 120679681 -577849 + polypyrimidine Low_complexity Low_complexity 4 63 0 2 1505 548 221 18 0 chr12 120679735 120679860 -577670 - B1F SINE Alu -21 129 3 2 1505 416 306 117 11 chr12 120680174 120680362 -577168 - B3 SINE B2 -5 211 4 2 1505 2067 224 98 118 chr12 120680649 120681541 -575989 - Lx9 LINE L1 -1 7643 6770 2 1505 23 68 0 0 chr12 120682006 120682050 -575480 + AT_rich Low_complexity Low_complexity 1 44 0 2 1505 794 300 54 0 chr12 120682166 120682426 -575104 + B4A SINE B4 1 274 -18 2 1505 2773 45 0 0 chr12 120682626 120682958 -574572 - IAPEY3_LTR LTR ERVK 0 332 1 2 1505 360 0 0 0 chr12 120688012 120688052 -569478 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1505 222 91 0 0 chr12 120689453 120689486 -568044 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1505 26 30 0 0 chr12 120689609 120689642 -567888 + AT_rich Low_complexity Low_complexity 1 33 0 2 1505 21 0 0 0 chr12 120691652 120691673 -565857 + AT_rich Low_complexity Low_complexity 1 21 0 2 1505 1036 201 5 23 chr12 120691805 120692019 -565511 - B3 SINE B2 -5 211 2 2 1505 759 305 63 0 chr12 120692134 120692357 -565173 + Lx6 LINE L1 7193 7429 -31 2 1505 28 0 0 0 chr12 120692357 120692385 -565145 + AT_rich Low_complexity Low_complexity 1 28 0 2 1505 470 262 15 90 chr12 120693127 120693261 -564269 + B4A SINE B4 2 125 -167 2 1505 198 343 126 0 chr12 120693734 120693900 -563630 - MIRb SINE MIR -69 199 14 2 1505 198 219 0 0 chr12 120694175 120694207 -563323 + MIRm SINE MIR 93 124 -152 2 1505 288 0 0 0 chr12 120694869 120694901 -562629 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1505 297 328 132 21 chr12 120694953 120695143 -562387 - ID_B1 SINE B4 -12 212 2 2 1505 231 263 0 50 chr12 120695164 120695224 -562306 + ORR1B2 LTR MaLR 98 154 -213 2 1505 1187 61 0 0 chr12 120695952 120696099 -561431 - B1_Mus1 SINE Alu 0 148 2 2 1505 319 89 0 35 chr12 120696832 120696890 -560640 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 2 1505 410 366 78 50 chr12 120696978 120697260 -560270 + B4A SINE B4 2 291 -1 2 1505 230 267 0 16 chr12 120697261 120697322 -560208 + (CATA)n Simple_repeat Simple_repeat 3 62 0 2 1505 306 0 0 0 chr12 120697488 120697522 -560008 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 1505 3084 56 0 10 chr12 120697533 120697931 -559599 - L1Md_F2 LINE L1 -12 6570 6177 2 1505 2007 67 0 0 chr12 120697931 120698185 -559345 + L1Md_F2 LINE L1 5912 6165 -417 2 1505 869 211 186 75 chr12 120698822 120699155 -558375 + ORR1D2 LTR MaLR 1 370 0 2 1505 405 0 0 0 chr12 120699702 120699747 -557783 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1505 888 260 5 0 chr12 120700373 120700581 -556949 + B3 SINE B2 3 211 -5 2 1505 270 143 0 0 chr12 120701912 120701961 -555569 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1505 1146 82 7 0 chr12 120701962 120702109 -555421 - B1_Mus1 SINE Alu 0 148 1 2 1505 853 154 26 0 chr12 120702266 120702422 -555108 - URR1B DNA MER1_type -1 224 65 2 1505 22 70 0 0 chr12 120703400 120703443 -554087 + AT_rich Low_complexity Low_complexity 1 43 0 2 1505 615 258 48 61 chr12 120703443 120703608 -553922 + RSINE1 SINE B4 2 164 -1 2 1505 270 183 0 0 chr12 120703814 120703885 -553645 + CT-rich Low_complexity Low_complexity 2 72 0 2 1505 189 107 0 0 chr12 120704204 120704232 -553298 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 2 1505 34 72 0 0 chr12 120707192 120707261 -550269 + AT_rich Low_complexity Low_complexity 1 69 0 2 1505 1308 67 0 0 chr12 120707859 120708039 -549491 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1505 1430 300 75 54 chr12 120708204 120708817 -548713 - Lx8 LINE L1 -541 6932 6307 2 1505 945 156 122 11 chr12 120708819 120709000 -548530 + ORR1D1 LTR MaLR 3 203 -191 2 1505 2874 215 169 7 chr12 120709001 120709763 -547767 - ORR1C2-int LTR MaLR -484 886 1 2 1505 917 186 21 52 chr12 120709763 120709956 -547574 - ORR1C2 LTR MaLR 0 384 198 2 1505 949 222 9 59 chr12 120710561 120710781 -546749 + ORR1D1 LTR MaLR 164 372 -2 2 1505 351 233 11 0 chr12 120710783 120710873 -546657 - L1_Mur2 LINE L1 -881 4996 4906 2 1505 3211 138 2 17 chr12 120710911 120711094 -546436 + Lx LINE L1 5375 5555 -328 2 1505 2268 76 82 0 chr12 120711094 120711422 -546108 + IAPEY2_LTR LTR ERVK 1 355 -2 2 1505 5953 157 19 7 chr12 120711422 120712491 -545039 + Lx LINE L1 5556 6642 -12 2 1505 1636 175 62 3 chr12 120712576 120712868 -544662 + ORR1C2 LTR MaLR 76 384 0 2 1505 4656 93 27 142 chr12 120713479 120713923 -543607 - RMER17D LTR ERVK -2 887 561 2 1505 1861 34 47 0 chr12 120713923 120714157 -543373 + L1Md_F2 LINE L1 6338 6582 0 2 1505 4656 93 27 142 chr12 120714157 120714714 -542816 - RMER17D LTR ERVK -329 560 1 2 1505 453 19 0 0 chr12 120714933 120714987 -542543 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1505 524 286 157 54 chr12 120716184 120716535 -540995 - MLT1B LTR MaLR -3 387 1 2 1505 232 65 0 0 chr12 120716935 120716966 -540564 - ORR1A3 LTR MaLR -168 158 128 2 1506 21 36 0 0 chr12 120717395 120717423 -540107 + AT_rich Low_complexity Low_complexity 1 28 0 2 1506 4945 143 24 1 chr12 120718180 120719030 -538500 - Lx LINE L1 -1009 5645 4769 2 1506 8618 114 10 40 chr12 120719028 120720417 -537113 + Lx2 LINE L1 5650 6997 0 2 1506 878 159 14 20 chr12 120720496 120720644 -536886 + B1_Mur4 SINE Alu 1 147 -3 2 1506 1857 115 10 7 chr12 120720875 120721163 -536367 - L1_Mus3 LINE L1 -7 6631 6343 2 1506 3931 114 137 0 chr12 120721163 120721950 -535580 + L1_Mus3 LINE L1 5444 6330 -306 2 1506 642 218 6 58 chr12 120722819 120722975 -534555 + B1_Mur2 SINE Alu 1 148 -1 2 1506 4660 32 9 4 chr12 120723022 120723585 -533945 + L1Md_F3 LINE L1 6016 6581 -3 2 1506 1307 258 30 44 chr12 120723984 120724345 -533185 + ORR1E LTR MaLR 4 359 0 2 1506 21 57 0 0 chr12 120724805 120724840 -532690 + AT_rich Low_complexity Low_complexity 1 35 0 2 1506 972 203 20 45 chr12 120725515 120725716 -531814 - MTE2b LTR MaLR -12 367 172 2 1506 458 33 17 0 chr12 120725716 120725776 -531754 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1506 616 258 106 72 chr12 120725776 120726157 -531373 - RMER16 LTR ERVK -2 531 1 2 1506 265 176 13 51 chr12 120726157 120726235 -531295 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 1506 503 173 99 9 chr12 120726238 120726349 -531181 - RMER1B Other Other -12 1054 934 2 1506 406 230 0 0 chr12 120726515 120726589 -530941 - MTE2b LTR MaLR -246 133 60 2 1506 532 196 10 0 chr12 120726590 120726687 -530843 - MTE2b LTR MaLR -281 98 1 2 1506 31587 68 2 7 chr12 120727975 120732981 -524549 + L1Md_F2 LINE L1 625 5586 -297 2 1506 7777 59 6 1 chr12 120732981 120733970 -523560 + L1Md_F2 LINE L1 5587 6580 -2 2 1506 3761 32 5 0 chr12 120735085 120735519 -522011 + RLTR10C LTR ERVK 1 436 0 2 1506 2958 168 46 38 chr12 120735947 120736553 -520977 - RMER19C LTR ERVK 0 611 1 2 1506 186 394 60 12 chr12 120736633 120736800 -520730 + MIRb SINE MIR 46 220 -48 3 1506 1167 168 10 0 chr12 120736803 120737005 -520525 + Lx3C LINE L1 6771 6974 -2 3 1506 22 0 0 0 chr12 120737100 120737122 -520408 + AT_rich Low_complexity Low_complexity 1 22 0 3 1506 1530 178 224 14 chr12 120737364 120737712 -519818 + MTC LTR MaLR 1 421 0 3 1506 246 238 90 90 chr12 120738231 120738342 -519188 - LTR59 LTR ERV1 -432 165 55 3 1506 630 26 0 0 chr12 120739260 120739336 -518194 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1506 4697 61 0 2 chr12 120739982 120740575 -516955 + L1Md_F2 LINE L1 5991 6582 0 3 1506 329 257 147 10 chr12 120741150 120741252 -516278 - ORR1E LTR MaLR -8 371 256 3 1506 2551 161 131 0 chr12 120741270 120741737 -515793 - RLTR12B LTR ERVK 0 528 1 3 1506 606 259 25 80 chr12 120741771 120741972 -515558 - ORR1E LTR MaLR -164 195 6 3 1506 2134 136 9 0 chr12 120743479 120743802 -513728 + ORR1A3 LTR MaLR 1 326 0 3 1506 1136 84 0 0 chr12 120744131 120744274 -513256 + B1_Mus1 SINE Alu 2 144 -4 3 1506 290 26 0 25 chr12 120744277 120744317 -513213 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1506 606 259 82 24 chr12 120744676 120744846 -512684 + B3A SINE B2 1 180 -18 3 1506 2672 138 90 2 chr12 120746661 120747117 -510413 + RLTR11A LTR ERVK 1 496 -32 3 1506 204 125 0 0 chr12 120747232 120747264 -510266 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 3 1506 577 195 162 52 chr12 120747264 120747437 -510093 - B2_Mm2 SINE B2 0 195 4 3 1506 537 295 7 48 chr12 120747490 120747636 -509894 - B4A SINE B4 -152 140 1 3 1506 37 0 0 0 chr12 120747647 120747684 -509846 + AT_rich Low_complexity Low_complexity 1 37 0 3 1506 641 293 5 22 chr12 120747695 120747880 -509650 - B3A SINE B2 -16 182 1 3 1506 480 350 14 14 chr12 120747921 120748066 -509464 - RSINE1 SINE B4 0 165 21 3 1506 4167 35 0 0 chr12 120748963 120749445 -508085 + LTRIS_Mm LTR ERV1 1 482 0 3 1506 610 318 77 68 chr12 120749485 120749836 -507694 - ORR1E LTR MaLR -2 357 4 3 1506 269 309 31 0 chr12 120749863 120749960 -507570 - ORR1E LTR MaLR -1 378 279 3 1506 1167 368 113 55 chr12 120749974 120750990 -506540 - MTE-int LTR MaLR -492 1088 14 3 1506 334 313 147 24 chr12 120751147 120751317 -506213 - ORR1E LTR MaLR -167 192 2 3 1506 270 342 82 58 chr12 120751595 120751887 -505643 + ORR1D1 LTR MaLR 76 374 0 3 1506 36204 32 1 0 chr12 120752101 120759218 -498312 - L1Md_T LINE L1 0 6585 1 3 1506 219 244 8 38 chr12 120759348 120759427 -498103 + GA-rich Low_complexity Low_complexity 1 76 0 3 1506 189 0 0 0 chr12 120759864 120759885 -497645 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1506 1061 109 0 13 chr12 120759913 120760062 -497468 + B1_Mus1 SINE Alu 1 147 -1 3 1506 201 39 0 0 chr12 120760064 120760090 -497440 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1506 218 269 21 129 chr12 120760121 120760244 -497286 - MIRc SINE MIR -152 116 4 3 1506 1068 246 215 37 chr12 120760717 120761127 -496403 + RMER20B LTR ERVK 109 591 -36 3 1506 1295 254 50 3 chr12 120761141 120761481 -496049 - MTE2b LTR MaLR -12 367 12 3 1506 293 248 228 16 chr12 120762241 120762364 -495166 + LTR80B LTR ERVL 121 269 -315 3 1506 1336 271 77 10 chr12 120763539 120763931 -493599 - RMER15 LTR ERVL -3 572 155 3 1506 2362 172 48 58 chr12 120763946 120764513 -493017 - RLTR31_Mm LTR ERVK 0 561 1 3 1506 348 190 47 23 chr12 120764521 120764607 -492923 - RMER15 LTR ERVL -440 135 48 3 1506 273 57 0 0 chr12 120765378 120765413 -492117 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1506 371 327 99 13 chr12 120765417 120765569 -491961 - B4A SINE B4 -9 283 119 3 1506 21 0 0 0 chr12 120765670 120765691 -491839 + AT_rich Low_complexity Low_complexity 1 21 0 3 1506 205 152 0 42 chr12 120765692 120765740 -491790 + (TTA)n Simple_repeat Simple_repeat 3 48 0 3 1506 266 260 13 52 chr12 120765740 120765817 -491713 - RSINE1 SINE B4 0 165 92 3 1506 3623 215 91 77 chr12 120766125 120767392 -490138 + RMER1A Other Other 22 1004 -26 3 1506 2782 64 17 0 chr12 120767652 120768009 -489521 - RLTR8 LTR ERVK 0 365 3 3 1506 359 255 60 20 chr12 120768117 120768217 -489313 + MER5B DNA MER1_type 2 105 -73 3 1506 1432 242 94 35 chr12 120768780 120768796 -488734 + MTD LTR MaLR 1 14 -405 3 1506 200 34 0 33 chr12 120768796 120768826 -488704 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 3 1506 1432 242 94 35 chr12 120768826 120769203 -488327 + MTD LTR MaLR 15 417 -2 3 1506 322 314 85 86 chr12 120770025 120770342 -487188 + ORR1C1 LTR MaLR 50 378 0 3 1506 289 329 82 82 chr12 120772055 120772323 -485207 + L2a LINE L2 3138 3405 -21 3 1506 17405 74 39 2 chr12 120772481 120774650 -482880 - L1VL4 LINE L1 -4 3555 1345 3 1506 459 0 0 0 chr12 120774650 120774701 -482829 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1506 17405 74 39 2 chr12 120774701 120775089 -482441 - L1VL4 LINE L1 -2215 1344 918 3 1506 302 0 26 0 chr12 120775089 120775127 -482403 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1506 17405 107 32 1 chr12 120775127 120775840 -481690 - L1VL4 LINE L1 -2642 917 179 3 1506 10935 65 12 3 chr12 120775894 120778072 -479458 - L1Md_F2 LINE L1 -3 6579 4388 3 1506 992 250 70 71 chr12 120778273 120778721 -478809 + RMER16 LTR ERVK 1 533 0 3 1506 292 264 31 47 chr12 120779103 120779230 -478300 - Ricksha_c DNA MuDR -1579 469 345 3 1506 21 36 0 0 chr12 120780376 120780404 -477126 + AT_rich Low_complexity Low_complexity 1 28 0 3 1506 31870 121 12 24 chr12 120781166 120787504 -470026 - L1_Mus1 LINE L1 -1 6566 282 3 1506 6136 64 0 11 chr12 120787610 120788363 -469167 - L1Md_F2 LINE L1 0 6582 5838 3 1506 6680 54 5 8 chr12 120788363 120789215 -468315 + L1Md_F2 LINE L1 4978 5826 -57 3 1506 805 250 147 8 chr12 120790599 120790882 -466648 - MTD LTR MaLR -1 418 89 3 1506 225 352 0 95 chr12 120790877 120790993 -466537 + B4 SINE B4 41 145 -147 3 1506 2892 63 0 0 chr12 120791005 120791337 -466193 + IAPEY3_LTR LTR ERVK 1 332 0 3 1506 23974 98 9 4 chr12 120791337 120794608 -462922 + IAPEY3-int LTR ERVK 1 3287 -4393 3 1506 3682 57 56 0 chr12 120794607 120795338 -462192 + IAPEY3-int LTR ERVK 6909 7680 0 3 1506 2873 63 0 0 chr12 120795338 120795670 -461860 + IAPEY3_LTR LTR ERVK 1 332 0 3 1506 29507 85 19 5 chr12 120795671 120800920 -456610 + Lx3_Mus LINE L1 1669 6992 -17 3 1506 36 0 0 0 chr12 120800920 120800956 -456574 + AT_rich Low_complexity Low_complexity 1 36 0 3 1506 209 213 21 0 chr12 120801104 120801151 -456379 + (TATG)n Simple_repeat Simple_repeat 4 51 0 3 1506 22 0 0 0 chr12 120801923 120801945 -455585 + AT_rich Low_complexity Low_complexity 1 22 0 3 1506 24 0 0 0 chr12 120802679 120802703 -454827 + AT_rich Low_complexity Low_complexity 1 24 0 3 1506 726 332 28 25 chr12 120802923 120803207 -454323 - B4A SINE B4 -6 286 2 3 1506 268 355 65 16 chr12 120803317 120803440 -454090 - MER5A DNA MER1_type -1 188 60 3 1506 341 274 0 14 chr12 120803442 120803516 -454014 + B1_Mur3 SINE Alu 2 74 -75 3 1506 421 68 17 0 chr12 120803513 120803572 -453958 - 4.5SRNA scRNA scRNA -34 60 1 3 1506 295 182 58 4 chr12 120803574 120803651 -453879 + PB1D9 SINE Alu 62 148 -1 3 1506 261 0 0 0 chr12 120803703 120803732 -453798 + (ATG)n Simple_repeat Simple_repeat 1 29 0 3 1506 895 162 52 0 chr12 120803732 120803863 -453667 - B1_Mur2 SINE Alu -2 147 10 3 1506 763 260 56 50 chr12 120804514 120804871 -452659 + RLTR10D LTR ERVK 1 359 0 3 1506 15859 274 35 17 chr12 120804913 120809976 -447554 + IAP-d-int LTR ERVK 15 5169 -1373 3 1506 1615 210 17 25 chr12 120810102 120810458 -447072 + IAP-d-int LTR ERVK 6190 6542 0 3 1506 885 244 64 59 chr12 120810458 120810815 -446715 + RLTR10D LTR ERVK 1 359 0 3 1506 1118 312 83 5 chr12 120810834 120811208 -446322 + MTE-int LTR MaLR 212 614 -966 3 1506 651 239 14 63 chr12 120811409 120811552 -445978 + B1_Mur1 SINE Alu 1 136 -13 3 1506 8417 39 0 0 chr12 120811562 120812548 -444982 - L1Md_T LINE L1 0 6582 5597 3 1506 6516 18 0 0 chr12 120812547 120813282 -444248 + L1Md_T LINE L1 4852 5586 -297 3 1506 9471 10 0 0 chr12 120813282 120814278 -443252 + L1Md_T LINE L1 5587 6582 0 3 1506 3191 19 0 0 chr12 120814279 120814641 -442889 + L1_Mm LINE L1 5243 5604 -279 3 1506 378 0 0 0 chr12 120814707 120814749 -442781 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1506 261 0 0 0 chr12 120814749 120814777 -442753 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1506 574 68 0 22 chr12 120815738 120815828 -441702 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 3 1506 234 306 134 9 chr12 120816529 120816641 -440889 - MIR SINE MIR -13 249 124 3 1506 521 277 126 49 chr12 120817482 120817929 -439601 - L1MB7 LINE L1 -192 5992 5513 3 1506 827 46 9 0 chr12 120818146 120818254 -439276 + (TC)n Simple_repeat Simple_repeat 2 110 0 3 1506 287 265 9 97 chr12 120818266 120818379 -439151 - L1M3 LINE L1 -1027 5113 5011 3 1506 4934 247 133 27 chr12 120818586 120821321 -436209 - Lx9 LINE L1 -1 7643 4397 3 1506 1971 156 72 33 chr12 120821321 120821680 -435850 + ORR1C1 LTR MaLR 3 375 -3 3 1506 2345 291 173 29 chr12 120821680 120822191 -435339 - Lx9 LINE L1 -1481 4396 3843 3 1506 10252 58 3 1 chr12 120822184 120824192 -433338 - L1Md_F2 LINE L1 0 6582 4571 3 1506 307 231 118 33 chr12 120824176 120824328 -433202 - L1_Rod LINE L1 -2030 3817 3653 3 1506 587 169 0 60 chr12 120824328 120824511 -433019 + CT-rich Low_complexity Low_complexity 5 176 0 3 1506 327 281 25 25 chr12 120824511 120824668 -432862 - L1_Rod LINE L1 -2300 3547 3391 3 1506 5165 148 18 4 chr12 120824674 120825513 -432017 - L1_Mm LINE L1 -691 5192 4342 3 1506 6780 98 9 30 chr12 120825511 120826671 -430859 + L1_Mus4 LINE L1 5374 6518 -118 3 1506 16687 76 8 0 chr12 120826657 120829195 -428335 + L1Md_F2 LINE L1 953 3510 -2373 3 1506 2235 123 41 41 chr12 120829195 120829560 -427970 + IAPLTR1_Mm LTR ERVK 1 365 -2 3 1506 39474 17 4 3 chr12 120829560 120836027 -421503 + IAPEz-int LTR ERVK 6 6481 0 3 1506 2048 123 41 41 chr12 120836027 120836392 -421138 + IAPLTR1_Mm LTR ERVK 1 365 -2 3 1506 15463 74 1 10 chr12 120836392 120838492 -419038 + L1Md_F2 LINE L1 3503 5583 -300 3 1506 7922 35 21 6 chr12 120838495 120839473 -418057 + L1Md_F2 LINE L1 5587 6579 -3 3 1506 9211 122 25 5 chr12 120840381 120842195 -415335 + Lx2 LINE L1 5146 6996 -1 3 1506 2172 208 207 21 chr12 120843052 120843671 -413859 - RMER19A LTR ERVK 0 737 4 3 1506 555 217 29 65 chr12 120843672 120843810 -413720 - B1_Mur4 SINE Alu -16 134 2 3 1506 21 0 0 0 chr12 120844498 120844519 -413011 + AT_rich Low_complexity Low_complexity 1 21 0 3 1506 254 213 13 39 chr12 120845250 120845328 -412202 + A-rich Low_complexity Low_complexity 3 78 0 3 1506 203 340 187 44 chr12 120845476 120845671 -411859 - L2 LINE L2 -459 2960 2773 3 1506 492 18 0 0 chr12 120845671 120845728 -411802 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1506 203 340 187 44 chr12 120845728 120845874 -411656 - L2 LINE L2 -647 2772 2570 3 1506 330 45 0 0 chr12 120846686 120846730 -410800 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 1506 402 303 151 19 chr12 120847114 120847326 -410204 + MER74C LTR ERVL 17 256 -204 4 1507 409 37 37 0 chr12 120850455 120850509 -407021 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 4 1507 911 174 0 6 chr12 120850509 120850688 -406842 + A-rich Low_complexity Low_complexity 3 180 0 4 1507 820 329 16 12 chr12 120851004 120851259 -406271 + B4 SINE B4 24 279 -13 4 1507 1498 235 75 58 chr12 120851771 120851839 -405691 + MTD LTR MaLR 1 61 -358 4 1507 2948 81 0 12 chr12 120851839 120852240 -405290 - MTA_Mm LTR MaLR 0 396 1 4 1507 1498 235 75 58 chr12 120852240 120852583 -404947 + MTD LTR MaLR 62 419 0 4 1507 562 241 151 6 chr12 120852734 120852893 -404637 - B3A SINE B2 -16 182 1 4 1507 22 56 0 0 chr12 120854182 120854218 -403312 + AT_rich Low_complexity Low_complexity 1 36 0 4 1507 1297 240 72 3 chr12 120854922 120855240 -402290 - Lx9 LINE L1 -604 7040 6701 4 1507 22 35 0 0 chr12 120855423 120855452 -402078 + AT_rich Low_complexity Low_complexity 1 29 0 4 1507 414 0 0 0 chr12 120855506 120855552 -401978 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 1507 1321 31 0 0 chr12 120855552 120855712 -401818 - B2_Mm1a SINE B2 -33 160 1 4 1507 33 25 0 0 chr12 120855817 120855857 -401673 + AT_rich Low_complexity Low_complexity 1 40 0 4 1507 366 250 10 59 chr12 120856478 120856580 -400950 + PB1 SINE Alu 30 126 -1 4 1507 4324 236 131 43 chr12 120856580 120857881 -399649 + Lx7 LINE L1 6266 7680 -16 4 1507 4904 203 95 37 chr12 120858113 120859153 -398377 - Lx9 LINE L1 -1 7643 6561 4 1507 2869 86 32 0 chr12 120859153 120859561 -397969 - BGLII LTR ERVK 0 421 1 4 1507 4904 203 95 37 chr12 120859561 120859765 -397765 - Lx9 LINE L1 -1084 6560 6327 4 1507 1761 264 67 5 chr12 120860350 120860973 -396557 + L1_Mur3 LINE L1 4049 4710 -1170 4 1507 291 130 0 0 chr12 120860974 120861028 -396502 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1507 225 0 0 0 chr12 120861033 120861058 -396472 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 1507 330 317 115 98 chr12 120861129 120861590 -395940 - L1MEf LINE L1 -4232 1968 1500 4 1507 814 291 35 41 chr12 120863722 120864012 -393518 + B4A SINE B4 1 288 -4 4 1507 296 272 43 0 chr12 120864043 120864135 -393395 + ID_B1 SINE B4 5 100 -124 4 1507 232 127 18 18 chr12 120864224 120864280 -393250 + GA-rich Low_complexity Low_complexity 2 57 0 4 1507 1784 164 22 37 chr12 120865362 120865685 -391845 + ORR1A3 LTR MaLR 1 318 -8 4 1507 589 237 53 0 chr12 120868219 120868333 -389197 + B1_Mur1 SINE Alu 23 142 -7 4 1507 759 247 137 0 chr12 120868372 120868562 -388968 - B3 SINE B2 0 216 1 4 1507 21 0 0 0 chr12 120868562 120868583 -388947 + AT_rich Low_complexity Low_complexity 1 21 0 4 1507 24 85 0 0 chr12 120869209 120869268 -388262 + AT_rich Low_complexity Low_complexity 1 59 0 4 1507 201 74 0 0 chr12 120869559 120869586 -387944 + (CTATA)n Simple_repeat Simple_repeat 2 28 0 4 1507 354 329 44 60 chr12 120869869 120870167 -387363 + L1MEg LINE L1 1374 1666 -4418 4 1507 23640 63 193 4 chr12 120870363 120874739 -382791 + L1Md_F2 LINE L1 443 5572 -314 4 1507 8175 43 1 5 chr12 120874746 120875746 -381784 + L1Md_F2 LINE L1 5590 6585 0 4 1507 27415 121 28 23 chr12 120876365 120882108 -375422 + Lx4A LINE L1 887 6695 -363 4 1507 4552 80 17 124 chr12 120882108 120882542 -374988 - RMER17A LTR ERVK 0 751 350 4 1507 1275 89 0 0 chr12 120882542 120882721 -374809 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1507 4552 80 17 124 chr12 120882721 120883127 -374403 - RMER17A LTR ERVK -402 349 1 4 1507 8585 144 34 27 chr12 120883127 120883509 -374021 + Lx4A LINE L1 6696 7055 -3 4 1507 24 0 0 0 chr12 120883510 120883534 -373996 + AT_rich Low_complexity Low_complexity 1 24 0 4 1507 21 58 0 19 chr12 120883601 120883616 -373914 + AT_rich Low_complexity Low_complexity 1 15 0 4 1507 1333 143 233 15 chr12 120883616 120883886 -373644 - ORR1A4 LTR MaLR 0 329 1 4 1507 21 58 0 19 chr12 120883886 120883923 -373607 + AT_rich Low_complexity Low_complexity 1 37 0 4 1507 320 209 3 16 chr12 120883945 120884042 -373488 + B4A SINE B4 2 98 -67 4 1507 254 373 42 7 chr12 120884689 120884832 -372698 + MLT1J2 LTR MaLR 34 181 -267 4 1507 678 304 24 38 chr12 120885531 120885743 -371787 - MER20 DNA MER1_type -2 217 9 4 1507 291 295 76 38 chr12 120886159 120886395 -371135 - HAL1 LINE L1 -1030 1477 1233 4 1507 28 0 0 0 chr12 120887081 120887109 -370421 + AT_rich Low_complexity Low_complexity 1 28 0 4 1507 336 294 220 0 chr12 120887135 120887244 -370286 - B3 SINE B2 -83 133 1 4 1507 431 288 70 61 chr12 120887478 120887707 -369823 + MLT1D LTR MaLR 4 234 -271 4 1507 1082 197 16 41 chr12 120887819 120888062 -369468 - RMER19C LTR ERVK 0 611 375 4 1507 971 209 75 38 chr12 120888032 120888271 -369259 - RMER19C LTR ERVK -350 552 305 4 1507 360 0 0 0 chr12 120888918 120888958 -368572 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1507 3592 117 21 2 chr12 120889428 120889993 -367537 + L1VL4 LINE L1 194 769 -5533 4 1507 11998 164 17 6 chr12 120889989 120891129 -366401 + Lx LINE L1 3583 4730 -1153 4 1507 644 0 13 0 chr12 120891129 120891205 -366325 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 4 1507 11998 153 18 6 chr12 120891205 120893107 -364423 + Lx LINE L1 4731 6654 0 4 1507 762 68 0 8 chr12 120893131 120893250 -364280 + L1_Mus4 LINE L1 6519 6636 0 4 1507 1985 221 55 146 chr12 120893778 120894140 -363390 - RMER19C LTR ERVK 0 611 252 4 1507 1142 95 0 0 chr12 120894140 120894287 -363243 + B1_Mus1 SINE Alu 2 148 0 4 1507 1985 221 55 146 chr12 120894287 120894596 -362934 - RMER19C LTR ERVK -360 251 1 4 1507 461 62 15 0 chr12 120894788 120894853 -362677 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1507 194 239 14 0 chr12 120895129 120895200 -362330 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 4 1507 225 65 0 0 chr12 120896902 120896933 -360597 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1507 12979 73 32 9 chr12 120896945 120899497 -358033 + L1Md_A LINE L1 351 2964 -2919 4 1507 23 0 0 0 chr12 120899497 120899520 -358010 + AT_rich Low_complexity Low_complexity 1 23 0 4 1507 39015 12 2 6 chr12 120899520 120906078 -351452 - L1Md_A LINE L1 0 6582 54 4 1507 21345 25 0 0 chr12 120906078 120908715 -348815 + L1Md_A LINE L1 2949 5586 -297 4 1507 8602 25 0 2 chr12 120908715 120909713 -347817 + L1Md_A LINE L1 5587 6582 0 4 1507 468 0 0 0 chr12 120909781 120909833 -347697 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1507 2345 57 10 0 chr12 120909834 120910130 -347400 + L1_Mus1 LINE L1 6269 6567 0 4 1507 487 303 31 31 chr12 120910898 120911089 -346441 + B4A SINE B4 6 196 -96 4 1507 2774 163 35 136 chr12 120911090 120911751 -345779 + ORR1A4-int LTR MaLR 1370 1963 0 4 1507 774 162 11 111 chr12 120911753 120911933 -345597 + ORR1A4 LTR MaLR 6 167 -162 4 1507 28303 138 35 23 chr12 120911939 120914663 -342867 + L1_Mus2 LINE L1 396 3144 -2739 4 1507 198 71 0 0 chr12 120914663 120914691 -342839 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1507 28303 101 24 7 chr12 120914691 120918071 -339459 + L1_Mus2 LINE L1 3145 6565 -1 4 1507 299 204 0 0 chr12 120918314 120918368 -339162 + B2_Mm2 SINE B2 1 54 -141 4 1507 2181 134 0 20 chr12 120918368 120918710 -338820 + Lx3A LINE L1 6639 6973 -8 4 1507 25 31 0 0 chr12 120918710 120918742 -338788 + AT_rich Low_complexity Low_complexity 1 32 0 4 1507 391 318 27 59 chr12 120918810 120918997 -338533 + L1M2 LINE L1 2164 2344 -3799 4 1507 28 0 0 0 chr12 120919198 120919226 -338304 + AT_rich Low_complexity Low_complexity 1 28 0 4 1507 476 329 15 0 chr12 120919251 120919388 -338142 - ID_B1 SINE B4 -82 142 4 4 1507 248 254 184 86 chr12 120919403 120919648 -337882 + L1M2 LINE L1 2554 2822 -3321 4 1507 1042 276 66 107 chr12 120919709 120920778 -336752 + L1M2 LINE L1 3373 4398 -1745 4 1507 698 330 78 26 chr12 120921890 120922353 -335177 + L3 LINE CR1 3096 3582 -907 4 1507 652 307 47 5 chr12 120923075 120923095 -334435 - B3A SINE B2 0 198 178 4 1507 360 0 0 0 chr12 120923095 120923135 -334395 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1507 652 307 47 5 chr12 120923135 120923304 -334226 - B3A SINE B2 -21 177 2 4 1507 22970 76 7 2 chr12 120923319 120927312 -330218 - L1Md_F2 LINE L1 0 6582 2575 4 1507 13522 61 3 0 chr12 120927312 120929180 -328350 + L1Md_F2 LINE L1 2357 4230 -1653 4 1507 31848 76 2 16 chr12 120929182 120934544 -322986 + L1Md_F2 LINE L1 306 5586 -297 4 1507 7925 50 4 1 chr12 120934544 120935525 -322005 + L1Md_F2 LINE L1 5587 6570 -12 4 1507 10212 50 11 0 chr12 120935528 120936880 -320650 + L1Md_F2 LINE L1 4219 5585 -298 4 1507 7959 47 2 6 chr12 120936881 120937902 -319628 + L1Md_F2 LINE L1 5587 6582 0 4 1507 24 0 0 0 chr12 120937915 120937939 -319591 + AT_rich Low_complexity Low_complexity 1 24 0 4 1507 329 272 56 0 chr12 120937939 120938064 -319466 + L1MB1 LINE L1 5854 5985 -183 4 1507 344 306 33 39 chr12 120938633 120938813 -318717 - RLTR42-int LTR ERVK -4122 1400 1222 4 1507 441 261 100 20 chr12 120939764 120939876 -317654 - MIRb SINE MIR -4 258 137 4 1507 558 0 0 0 chr12 120939876 120939938 -317592 + (CAAAA)n Simple_repeat Simple_repeat 5 66 0 4 1507 441 259 92 21 chr12 120939938 120939991 -317539 - MIRb SINE MIR -125 143 82 4 1507 537 242 47 87 chr12 120940045 120940217 -317313 + B2_Mm2 SINE B2 9 173 -22 4 1507 925 319 38 29 chr12 120940235 120940681 -316849 + Lx8 LINE L1 6472 6921 -552 4 1507 1750 311 43 19 chr12 120940686 120941378 -316152 + Lx8 LINE L1 6251 6959 -514 4 1507 838 185 72 88 chr12 120941415 120941688 -315842 - RMER12 LTR ERVK -23 1299 980 4 1507 467 169 108 0 chr12 120941688 120941776 -315754 - RMER12 LTR ERVK -1301 103 1 4 1507 698 311 88 20 chr12 120941782 120942237 -315293 + Lx8 LINE L1 6949 7469 -4 4 1507 268 304 25 57 chr12 120942487 120942609 -314921 - MTE2b LTR MaLR -31 348 231 4 1507 219 36 0 0 chr12 120943052 120943080 -314450 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1507 21 0 0 0 chr12 120943981 120944002 -313528 + AT_rich Low_complexity Low_complexity 1 21 0 4 1507 837 223 104 5 chr12 120945296 120945508 -312022 + RMER5 LTR ERV1 301 533 -1 4 1507 1139 311 106 27 chr12 120945764 120945903 -311627 - L1M3 LINE L1 -794 5346 5189 4 1507 2391 132 0 37 chr12 120945903 120946282 -311248 - RLTR8 LTR ERVK 0 365 1 4 1507 1139 311 106 27 chr12 120946282 120947115 -310415 - L1M3 LINE L1 -952 5188 4298 4 1507 219 45 21 43 chr12 120947537 120947584 -309946 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1507 419 249 10 18 chr12 120947613 120947715 -309815 - B4A SINE B4 -67 98 1 4 1507 34108 73 3 2 chr12 120948239 120954302 -303228 - L1Md_F2 LINE L1 -4 6578 509 4 1507 36 23 0 0 chr12 120954376 120954419 -303111 + AT_rich Low_complexity Low_complexity 1 43 0 4 1507 429 103 0 0 chr12 120954843 120954911 -302619 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1507 3266 18 29 0 chr12 120954911 120955292 -302238 + MTA_Mm LTR MaLR 5 396 0 5 1507 504 0 0 0 chr12 120955292 120955348 -302182 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1507 2319 178 57 9 chr12 120955359 120955871 -301659 + Lx5 LINE L1 6469 7054 -4 5 1507 276 242 53 0 chr12 120956639 120956734 -300796 + L1MB8 LINE L1 6077 6176 -2 5 1507 1832 108 7 7 chr12 120957024 120957305 -300225 + RLTR13D6 LTR ERVK 613 893 -9 5 1507 3014 47 34 5 chr12 120957306 120957687 -299843 + MTA_Mm LTR MaLR 1 392 -4 5 1507 1299 266 55 68 chr12 120958984 120959603 -297927 - L1MA5 LINE L1 -232 6065 5484 5 1507 567 220 185 11 chr12 120959603 120959787 -297743 - B3 SINE B2 0 216 1 5 1507 1299 264 60 58 chr12 120959787 120959873 -297657 - L1MA5 LINE L1 -817 5483 5406 5 1507 28 61 0 0 chr12 120959879 120959928 -297602 + AT_rich Low_complexity Low_complexity 1 49 0 5 1507 859 244 52 0 chr12 120959940 120960133 -297397 - B3 SINE B2 -13 203 1 5 1507 472 233 9 1 chr12 120960281 120960409 -297121 - L1M2 LINE L1 -680 5620 5493 5 1507 3666 221 43 33 chr12 120960451 120961300 -296230 - Lx5 LINE L1 -11 7039 6154 5 1507 575 207 41 16 chr12 120961684 120961807 -295723 + Lx5 LINE L1 6188 6313 -737 5 1507 253 298 68 34 chr12 120961812 120961930 -295600 + L2 LINE L2 2728 2849 -570 5 1507 233 235 14 29 chr12 120962022 120962092 -295438 + CT-rich Low_complexity Low_complexity 5 73 0 5 1507 10960 166 60 14 chr12 120962186 120964641 -292889 - L1_Mur1 LINE L1 -314 3598 1033 5 1507 679 224 0 0 chr12 120964608 120964733 -292797 + Lx9 LINE L1 6551 6675 -969 5 1507 290 412 53 38 chr12 120965594 120965859 -291671 + LTR16C LTR ERVL 210 478 -11 5 1507 944 130 7 0 chr12 120967202 120967348 -290182 + URR1A DNA MER1_type 79 225 -1 5 1507 942 284 87 66 chr12 120967616 120968204 -289326 + L1MC1 LINE L1 67 666 -5842 5 1507 959 29 29 22 chr12 120968326 120968465 -289065 - L1Md_F3 LINE L1 0 6584 6445 5 1507 1039 292 84 33 chr12 120968570 120969307 -288223 + L1M3 LINE L1 3737 4511 -1629 5 1507 1487 253 15 24 chr12 120969314 120969646 -287884 + MTE2a LTR MaLR 3 331 -48 5 1507 614 222 31 50 chr12 120969785 120970058 -287472 + MTD LTR MaLR 20 404 -15 5 1507 204 250 0 0 chr12 120970146 120970194 -287336 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1507 216 86 0 0 chr12 120970231 120970266 -287264 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1507 1235 41 0 0 chr12 120970270 120970417 -287113 - B1_Mus2 SINE Alu 0 147 1 5 1507 27 62 0 0 chr12 120970606 120970654 -286876 + AT_rich Low_complexity Low_complexity 1 48 0 5 1507 330 244 76 4 chr12 120970691 120970920 -286610 + L1MC1 LINE L1 2204 2455 -3866 5 1507 688 210 37 12 chr12 120970983 120971147 -286383 - Lx5 LINE L1 0 7050 6883 5 1507 267 289 25 34 chr12 120971163 120971281 -286249 + L1M5 LINE L1 2355 2471 -3675 5 1507 765 277 118 55 chr12 120971287 120971956 -285574 + L1MC1 LINE L1 3343 4053 -2268 5 1507 1121 68 0 0 chr12 120971961 120972108 -285422 + B1_Mm SINE Alu 1 147 0 5 1507 229 211 18 0 chr12 120972108 120972165 -285365 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 5 1507 1134 258 23 35 chr12 120972364 120972710 -284820 - L1_Rod LINE L1 -1689 4158 3817 5 1507 8402 119 73 1 chr12 120972712 120974053 -283477 - Lx4A LINE L1 0 7058 5622 5 1507 1266 241 37 111 chr12 120974053 120974169 -283361 - L1_Rod LINE L1 -2006 3841 3730 5 1507 254 51 0 49 chr12 120974169 120974210 -283320 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1507 495 256 22 15 chr12 120974210 120974345 -283185 - B1_Mur2 SINE Alu -11 138 3 5 1507 1266 241 37 111 chr12 120974345 120974792 -282738 - L1_Rod LINE L1 -2118 3729 3318 5 1507 3683 47 123 2 chr12 120974792 120975281 -282249 - L1_Mus1 LINE L1 -1 6566 6019 5 1507 1266 241 37 111 chr12 120975281 120975364 -282166 - L1_Rod LINE L1 -2530 3317 3242 5 1507 426 189 27 0 chr12 120975364 120975475 -282055 + CT-rich Low_complexity Low_complexity 2 115 0 5 1507 467 328 26 51 chr12 120975497 120975809 -281721 + L1MC1 LINE L1 4778 5081 -1240 5 1507 241 243 215 14 chr12 120975990 120976199 -281331 + L1MC1 LINE L1 5166 5416 -905 5 1507 236 152 0 15 chr12 120976283 120976350 -281180 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1507 534 70 0 0 chr12 120976351 120976422 -281108 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1507 1552 251 57 24 chr12 120976453 120976958 -280572 + L1MC1 LINE L1 5570 6091 -417 5 1507 489 275 146 20 chr12 120976997 120977298 -280232 + L1MC1 LINE L1 6169 6507 -1 5 1507 1012 236 168 9 chr12 120977393 120977709 -279821 + ORR1D2 LTR MaLR 3 368 -2 5 1507 28 61 0 0 chr12 120978153 120978202 -279328 + AT_rich Low_complexity Low_complexity 1 49 0 5 1507 916 133 18 12 chr12 120979233 120979400 -278130 - URR1A DNA MER1_type 0 226 59 5 1508 302 389 36 24 chr12 120979517 120979683 -277847 - MLT1D LTR MaLR 0 505 338 5 1508 351 0 0 0 chr12 120979692 120979731 -277799 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1508 366 23 0 0 chr12 120979731 120979773 -277757 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1508 1136 283 161 32 chr12 120981033 120981529 -276001 - RMER4B LTR ERVK -9 576 17 5 1508 398 225 67 0 chr12 120982637 120982726 -274804 + Lx8 LINE L1 7076 7170 -303 5 1508 480 310 32 147 chr12 120982762 120983076 -274454 - B4 SINE B4 -4 288 11 5 1508 243 319 60 34 chr12 120983228 120983345 -274185 + MER67D LTR ERV1 99 218 -296 5 1508 816 252 18 31 chr12 120983353 120983578 -273952 - ID_B1 SINE B4 -1 223 2 5 1508 6987 115 10 3 chr12 120983598 120984809 -272721 - L1_Mus3 LINE L1 -7 6631 5401 5 1508 32 43 0 0 chr12 120984811 120984857 -272673 + AT_rich Low_complexity Low_complexity 1 46 0 5 1508 38719 38 3 2 chr12 120985013 120991210 -266320 - L1Md_F2 LINE L1 -2 6580 422 5 1508 24184 137 15 45 chr12 120991210 120996116 -261414 - L1_Mus3 LINE L1 -472 5411 654 5 1508 327 222 69 31 chr12 120996106 120996236 -261294 + L1MA6 LINE L1 6139 6273 -27 5 1508 346 380 81 23 chr12 120996308 120996569 -260961 + MER67D LTR ERV1 231 506 -8 5 1508 188 390 119 22 chr12 120996980 120997300 -260230 - L2 LINE L2 -1851 1568 1218 5 1508 833 252 39 5 chr12 120997482 120997689 -259841 - B3 SINE B2 0 216 3 5 1508 243 322 98 75 chr12 120997723 120997978 -259552 - L2 LINE L2 -2598 821 561 5 1508 3278 143 50 29 chr12 120998103 120998479 -259051 - L1_Mur2 LINE L1 -1765 4112 3723 5 1508 1214 109 16 0 chr12 120998479 120998662 -258868 - B2_Mm1t SINE B2 -6 187 2 5 1508 3278 143 50 29 chr12 120998662 120998910 -258620 - L1_Mur2 LINE L1 -2155 3722 3475 5 1508 24 32 0 0 chr12 120998919 120998950 -258580 + AT_rich Low_complexity Low_complexity 1 31 0 5 1508 1904 263 133 27 chr12 120999024 120999680 -257850 + Lx6 LINE L1 6680 7404 -56 5 1508 445 266 97 5 chr12 120999815 121000000 -257530 + L1MC3 LINE L1 7311 7512 -273 5 1508 456 325 64 48 chr12 121000000 121000249 -257281 + L1MC3 LINE L1 7514 7766 -19 1 1508 260 53 26 0 chr12 121002690 121002728 -254802 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1508 254 312 0 13 chr12 121002749 121002827 -254703 - ID SINE ID -142 82 6 3 1508 428 281 217 45 chr12 121003160 121003469 -254061 - LTR40c LTR ERVL -85 380 19 4 1508 2613 75 23 3 chr12 121004373 121004720 -252810 + Lx3_Mus LINE L1 6649 7002 -7 5 1508 243 0 0 0 chr12 121004725 121004752 -252778 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 6 1508 25 31 0 0 chr12 121006225 121006257 -251273 + AT_rich Low_complexity Low_complexity 1 32 0 7 1508 626 215 94 22 chr12 121007044 121007182 -250348 + B3 SINE B2 1 148 -68 8 1508 371 55 0 18 chr12 121007224 121007279 -250251 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 9 1508 240 273 0 94 chr12 121007279 121007364 -250166 - MER20 DNA MER1_type -139 80 4 1 1508 4130 184 55 26 chr12 121007432 121008398 -249132 + RMER12 LTR ERVK 1 1196 -126 1 1508 482 261 57 57 chr12 121008568 121008743 -248787 + RMER12 LTR ERVK 1145 1319 -3 1 1508 336 276 128 8 chr12 121008869 121008986 -248544 - B1F SINE Alu 0 149 19 1 1508 329 318 90 60 chr12 121008875 121009009 -248521 - ID_B1 SINE B4 -5 219 82 1 1508 264 59 0 0 chr12 121009245 121009279 -248251 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1508 313 250 96 123 chr12 121009336 121009482 -248048 - RMER12 LTR ERVK -234 1088 947 1 1508 297 51 0 0 chr12 121009530 121009569 -247961 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1508 180 0 0 0 chr12 121009569 121009588 -247942 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1508 4733 117 15 5 chr12 121009591 121010327 -247203 - RMER12 LTR ERVK -572 750 8 1 1508 194 296 20 2 chr12 121010554 121010616 -246914 - MIRc SINE MIR -202 66 1 1 1508 22 56 0 0 chr12 121010616 121010652 -246878 + AT_rich Low_complexity Low_complexity 1 36 0 2 1508 1863 72 0 54 chr12 121010791 121011068 -246462 - L1Md_F2 LINE L1 -1 6581 6320 2 1508 3243 45 25 0 chr12 121011068 121011469 -246061 + RLTR10A LTR ERVK 1 411 0 2 1508 5099 57 15 9 chr12 121011471 121012156 -245374 + RLTR10-int LTR ERVK 304 992 -995 2 1508 424 319 27 27 chr12 121012296 121012574 -244956 + IAP-d-int LTR ERVK 822 1061 -5481 2 1508 344 140 0 0 chr12 121012593 121012650 -244880 + IAP-d-int LTR ERVK 447 503 -6039 2 1508 3509 52 84 12 chr12 121012650 121013136 -244394 + IAP-d-int LTR ERVK 5007 5527 -1015 2 1508 1921 59 145 0 chr12 121013149 121013452 -244078 + IAP-d-int LTR ERVK 5675 6021 -521 2 1508 2283 103 158 21 chr12 121013462 121014083 -243447 + RLTR10-int LTR ERVK 1282 1987 0 2 1508 2847 62 26 61 chr12 121014084 121014459 -243071 + RLTR10A LTR ERVK 1 376 -35 2 1508 807 63 8 8 chr12 121014459 121014587 -242943 + L1Md_F3 LINE L1 6457 6584 0 2 1508 2847 62 26 61 chr12 121014587 121014637 -242893 + RLTR10A LTR ERVK 377 411 0 2 1508 5397 48 32 8 chr12 121014637 121015564 -241966 - L1Md_F2 LINE L1 -257 6325 5370 2 1508 1601 174 123 27 chr12 121015566 121015939 -241591 - RLTR9E LTR ERVK 0 409 1 2 1508 431 82 26 64 chr12 121015941 121016019 -241511 - ETnERV2-int LTR ERVK -3 7403 7329 2 1508 396 219 248 13 chr12 121016019 121016176 -241354 - RLTR13D6 LTR ERVK -365 537 344 2 1508 740 133 8 8 chr12 121016202 121016323 -241207 - RLTR9E LTR ERVK -288 121 1 3 1508 18762 85 12 21 chr12 121016323 121019213 -238317 - L1Md_F LINE L1 -510 5373 2512 3 1508 30342 75 13 1 chr12 121019204 121024346 -233184 + L1Md_F2 LINE L1 390 5585 -298 3 1508 7893 55 2 0 chr12 121024347 121025329 -232201 + L1Md_F2 LINE L1 5587 6570 -12 3 1508 1867 69 46 4 chr12 121025331 121025594 -231936 + L1Md_F3 LINE L1 6299 6572 -12 3 1508 6133 89 4 12 chr12 121025618 121027126 -230404 - L1Md_F LINE L1 -3764 2119 651 3 1508 764 128 8 0 chr12 121027137 121027270 -230260 - L1_Mur2 LINE L1 -1221 4656 4523 3 1508 4035 251 21 11 chr12 121027273 121028221 -229309 + Lx5 LINE L1 6092 7049 -1 3 1508 246 62 0 0 chr12 121028379 121028411 -229119 + (TCC)n Simple_repeat Simple_repeat 3 34 0 3 1508 227 255 173 37 chr12 121028428 121028966 -228564 - L1M4b LINE L1 -5217 2117 1507 3 1508 282 56 0 0 chr12 121029270 121029306 -228224 + (CTTA)n Simple_repeat Simple_repeat 4 39 0 3 1508 8475 123 22 4 chr12 121029306 121030844 -226686 - Lx3C LINE L1 -16 6960 5395 3 1508 762 385 104 52 chr12 121030884 121031651 -225879 - L1M4b LINE L1 -6226 1108 302 3 1508 25 0 0 0 chr12 121031707 121031732 -225798 + AT_rich Low_complexity Low_complexity 1 25 0 4 1508 829 150 73 93 chr12 121031909 121032214 -225316 + RMER17B LTR ERVK 1 278 -680 4 1508 851 44 18 0 chr12 121032214 121032328 -225202 - L1Md_F2 LINE L1 -515 6067 5952 4 1508 2397 66 0 3 chr12 121032328 121032649 -224881 + L1Md_F2 LINE L1 6107 6426 -156 4 1508 6201 78 4 0 chr12 121032647 121033547 -223983 - L1_Mm LINE L1 -3546 2337 1434 4 1508 6962 40 0 0 chr12 121033547 121034372 -223158 + L1Md_F2 LINE L1 5744 6568 -14 4 1508 1046 96 32 0 chr12 121034379 121034535 -222995 + L1Md_F2 LINE L1 6410 6570 -12 4 1508 3425 143 85 29 chr12 121034535 121035192 -222338 + RMER17B LTR ERVK 264 957 -1 4 1508 6427 122 15 19 chr12 121035286 121036749 -220781 - L1_Mus3 LINE L1 -2 6636 5181 4 1508 21 57 0 0 chr12 121036765 121036800 -220730 + AT_rich Low_complexity Low_complexity 1 35 0 4 1508 531 89 8 51 chr12 121037080 121037198 -220332 + (CATATA)n Simple_repeat Simple_repeat 2 114 0 4 1508 5716 99 4 18 chr12 121037209 121038933 -218597 - L1Md_F LINE L1 -3813 2070 373 4 1508 2989 74 15 10 chr12 121038933 121039329 -218201 - L1_Mus1 LINE L1 -9 6558 6161 4 1508 2244 72 3 3 chr12 121039934 121040239 -217291 - L1Md_F2 LINE L1 0 6582 6278 5 1508 527 192 0 0 chr12 121040241 121040340 -217190 - L1_Mur2 LINE L1 -6427 285 187 5 1508 2689 106 29 35 chr12 121040348 121040424 -217106 - L1_Mur2 LINE L1 -4160 1717 1653 5 1508 3186 39 0 0 chr12 121040424 121040807 -216723 - L1Md_T LINE L1 0 6582 6200 5 1508 2689 130 57 22 chr12 121040807 121041583 -215947 - L1_Mur2 LINE L1 -4225 1652 837 5 1508 7189 117 8 3 chr12 121042039 121042159 -215371 - RLTR21 LTR ERVK -501 1071 954 5 1508 278 26 0 25 chr12 121042159 121042199 -215331 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 5 1508 7189 117 8 3 chr12 121042199 121043143 -214387 - RLTR21 LTR ERVK -619 953 2 5 1508 184 222 14 14 chr12 121043215 121043288 -214242 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1508 6075 133 27 51 chr12 121043392 121044502 -213028 - Lx3C LINE L1 -2 6974 5892 5 1508 312 135 0 0 chr12 121044503 121044555 -212975 + Lx3C LINE L1 5550 5601 -285 5 1508 6611 84 59 2 chr12 121044556 121045490 -212040 + L1Md_F2 LINE L1 5600 6582 0 5 1508 695 98 3 4 chr12 121045496 121045633 -211897 + Lx3C LINE L1 5781 5911 -1549 5 1508 417 223 39 33 chr12 121046161 121046314 -211216 + L1Md_F2 LINE L1 667 820 -5796 6 1508 21448 129 97 45 chr12 121046342 121048565 -208965 + L1Md_F2 LINE L1 771 2918 -2965 6 1508 2490 107 46 44 chr12 121048565 121048975 -208555 - RLTR10A LTR ERVK 0 411 1 6 1508 21448 124 125 24 chr12 121048975 121050536 -206994 + L1Md_F2 LINE L1 2919 4428 -1455 6 1508 1031 110 0 0 chr12 121050536 121050682 -206848 + B1_Mus1 SINE Alu 1 146 -2 6 1508 21448 124 125 24 chr12 121050682 121051223 -206307 + L1Md_F2 LINE L1 4429 5417 -466 6 1508 6869 45 7 1 chr12 121051223 121052070 -205460 + L1Md_F2 LINE L1 5731 6582 0 6 1508 990 89 0 0 chr12 121052070 121052205 -205325 + L1Md_F2 LINE L1 5452 5586 -297 6 1508 7653 71 1 2 chr12 121052206 121053202 -204328 + L1Md_F2 LINE L1 5588 6582 0 6 1508 565 220 14 28 chr12 121053206 121053351 -204179 + B3 SINE B2 28 170 -46 6 1508 200 161 36 0 chr12 121054198 121054254 -203276 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 6 1508 369 0 0 0 chr12 121054268 121054309 -203221 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1508 1096 103 67 28 chr12 121054455 121054634 -202896 + B2_Mm2 SINE B2 1 186 -9 6 1508 1761 220 73 38 chr12 121055872 121056350 -201180 + RLTR20B3 LTR ERVK 21 515 -62 6 1508 1431 251 85 16 chr12 121057089 121057454 -200076 + MTD LTR MaLR 6 395 -24 6 1508 3579 29 2 0 chr12 121057731 121058174 -199356 + L1Md_F2 LINE L1 5143 5586 -297 7 1508 8271 39 1 4 chr12 121058174 121059171 -198359 + L1Md_F2 LINE L1 5587 6580 -2 7 1508 463 354 76 26 chr12 121059536 121059800 -197730 - B4A SINE B4 -14 278 2 7 1508 393 22 0 0 chr12 121060101 121060147 -197383 + (TTA)n Simple_repeat Simple_repeat 1 46 0 7 1508 971 202 4 59 chr12 121060148 121060385 -197145 - URR1B DNA MER1_type 0 225 2 7 1508 2347 199 38 25 chr12 121060651 121061224 -196306 + RMER20B LTR ERVK 1 627 0 7 1508 351 299 46 23 chr12 121061614 121061744 -195786 - ID_B1 SINE B4 -14 210 78 7 1508 198 0 0 0 chr12 121062852 121062874 -194656 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1508 389 340 57 38 chr12 121063098 121063309 -194221 + ID_B1 SINE B4 6 220 -4 7 1508 576 237 82 6 chr12 121063358 121063528 -194002 + Lx9 LINE L1 7257 7439 -205 7 1508 293 211 11 0 chr12 121063571 121063661 -193869 + Lx9 LINE L1 7530 7620 -24 7 1508 806 225 13 127 chr12 121063664 121063980 -193550 + L1_Mur1 LINE L1 38 317 -6667 7 1508 6011 118 78 5 chr12 121064004 121065526 -192004 + L1_Mur1 LINE L1 239 2127 -3759 7 1508 20912 98 189 18 chr12 121065527 121069167 -188363 + L1Md_F2 LINE L1 214 3809 -2074 8 1508 1220 33 0 32 chr12 121069167 121069325 -188205 + L1Md_F2 LINE L1 6414 6566 -16 8 1508 20912 69 118 11 chr12 121069325 121071142 -186388 + L1Md_F2 LINE L1 3810 6561 -21 8 1508 23745 88 17 35 chr12 121071154 121072873 -184657 + Lx3_Mus LINE L1 2116 3822 -2064 8 1508 3908 32 0 6 chr12 121072873 121073341 -184189 + L1Md_F3 LINE L1 6119 6583 -1 8 1508 23745 89 15 30 chr12 121073341 121076600 -180930 + Lx3_Mus LINE L1 3823 7009 0 8 1508 25 0 0 0 chr12 121076627 121076652 -180878 + AT_rich Low_complexity Low_complexity 1 25 0 8 1508 758 263 17 0 chr12 121076685 121076860 -180670 + ORR1C1 LTR MaLR 147 324 -54 8 1508 380 20 20 0 chr12 121076862 121076911 -180619 + (GAA)n Simple_repeat Simple_repeat 2 51 0 8 1508 1723 110 101 11 chr12 121076942 121077218 -180312 + Lx3_Mus LINE L1 6701 7001 -8 8 1508 26 50 0 0 chr12 121077967 121078007 -179523 + AT_rich Low_complexity Low_complexity 1 40 0 8 1508 336 355 44 55 chr12 121078709 121078891 -178639 - ORR1E LTR MaLR -176 183 4 8 1508 6103 65 43 3 chr12 121079132 121080008 -177522 + L1_Mus2 LINE L1 5656 6564 -2 9 1508 263 241 44 18 chr12 121080131 121080245 -177285 + Lx4B LINE L1 6008 6124 -934 9 1508 9101 133 10 2 chr12 121080486 121082085 -175445 + Lx4A LINE L1 5435 7053 -5 9 1508 31 0 0 0 chr12 121082088 121082119 -175411 + AT_rich Low_complexity Low_complexity 1 31 0 9 1508 1789 276 21 4 chr12 121082505 121082975 -174555 - Lx5 LINE L1 -120 6930 6453 9 1508 701 155 0 7 chr12 121082985 121083134 -174396 + CT-rich Low_complexity Low_complexity 3 150 0 9 1508 3180 193 87 16 chr12 121083154 121084168 -173362 - Lx5 LINE L1 -733 6727 5418 9 1508 1299 259 33 22 chr12 121084183 121084546 -172984 - Lx9 LINE L1 -919 6725 6359 9 1508 279 0 0 0 chr12 121084668 121084699 -172831 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1508 235 295 29 116 chr12 121085702 121085840 -171690 + MLT1H1 LTR MaLR 333 458 -97 9 1508 26759 108 32 2 chr12 121086843 121087763 -169767 + L1_Mus2 LINE L1 577 1511 -4372 1 1508 5481 131 60 22 chr12 121087763 121088686 -168844 + RMER17B LTR ERVK 1 958 0 1 1508 26759 111 50 6 chr12 121088686 121091308 -166222 + L1_Mus2 LINE L1 1512 4342 -1541 1 1508 2729 57 96 0 chr12 121091308 121091662 -165868 - RLTR10 LTR ERVK -2 388 1 1 1508 26759 99 36 8 chr12 121091662 121093487 -164043 + L1_Mus2 LINE L1 4343 6156 -410 1 1508 1327 124 53 0 chr12 121093484 121093709 -163821 + MusHAL1 LINE L1 2163 2399 -313 1 1508 888 37 0 0 chr12 121093712 121093820 -163710 + (GGAGA)n Simple_repeat Simple_repeat 5 112 0 1 1508 512 147 2 10 chr12 121093839 121093940 -163590 + RMER3D-int LTR ERVK 1014 1094 -1748 1 1508 1823 182 10 18 chr12 121093954 121094346 -163184 + RMER3D-int LTR ERVK 1155 1543 -1299 1 1508 604 173 42 55 chr12 121094366 121094531 -162999 + RMER3D-int LTR ERVK 1532 1694 -1148 1 1508 3008 208 34 53 chr12 121094532 121095408 -162122 + RMER3D-int LTR ERVK 1925 2788 -54 1 1508 2454 62 69 0 chr12 121095408 121095728 -161802 + ORR1A1 LTR MaLR 1 342 -4 1 1508 3008 208 34 53 chr12 121095728 121095786 -161744 + RMER3D-int LTR ERVK 2789 2841 -1 1 1508 3010 75 19 7 chr12 121095787 121096203 -161327 + BGLII LTR ERVK 1 421 0 1 1508 3560 87 15 31 chr12 121096206 121096358 -161172 - MusHAL1 LINE L1 -640 2072 1937 1 1508 284 64 21 0 chr12 121096358 121096405 -161125 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 1508 3560 87 15 31 chr12 121096405 121096836 -160694 - MusHAL1 LINE L1 -776 1936 1498 1 1508 1246 119 25 0 chr12 121096840 121097041 -160489 + Lx LINE L1 6003 6208 -446 1 1508 643 233 0 11 chr12 121097331 121097509 -160021 + GA-rich Low_complexity Low_complexity 2 177 0 1 1508 242 160 20 0 chr12 121097552 121097602 -159928 + G-rich Low_complexity Low_complexity 1 51 0 1 1508 690 334 139 22 chr12 121097863 121098540 -158990 - L1MEf LINE L1 -4667 1966 1184 1 1508 30 27 0 0 chr12 121098623 121098660 -158870 + AT_rich Low_complexity Low_complexity 1 37 0 1 1508 5122 64 22 6 chr12 121098699 121099372 -158158 - Lx3_Mus LINE L1 0 7009 6326 1 1508 408 40 0 0 chr12 121099381 121099431 -158099 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 1 1508 2158 93 82 30 chr12 121099431 121099824 -157706 + Lx3_Mus LINE L1 5917 6331 -678 1 1508 302 283 86 68 chr12 121101640 121101860 -155670 + L1M4 LINE L1 2283 2506 -3640 1 1508 30 45 0 0 chr12 121101861 121101905 -155625 + AT_rich Low_complexity Low_complexity 1 44 0 1 1508 5027 220 48 52 chr12 121101973 121102628 -154902 - Lx7 LINE L1 0 7696 7068 1 1508 387 0 0 0 chr12 121102628 121102671 -154859 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1508 5027 220 48 52 chr12 121102671 121102713 -154817 - Lx7 LINE L1 -629 7067 7019 1 1508 2743 34 0 41 chr12 121102713 121103054 -154476 + IAPLTR2b LTR ERVK 1 327 0 1 1508 5027 220 48 52 chr12 121103054 121103734 -153796 - Lx7 LINE L1 -678 7018 6326 1 1508 1114 147 5 0 chr12 121103743 121103933 -153597 - L1_Mur1 LINE L1 -3535 2351 2161 1 1508 2732 238 9 167 chr12 121103933 121105438 -152092 + L1_Mm LINE L1 3985 5252 -631 1 1508 289 215 10 88 chr12 121105438 121105540 -151990 + RLTR25B LTR ERVK 428 521 -507 1 1508 852 62 0 0 chr12 121105450 121105562 -151968 + B1_Mus2 SINE Alu 36 147 0 1 1508 1215 83 0 0 chr12 121105567 121105929 -151601 + (GAA)n Simple_repeat Simple_repeat 1 362 0 1 1508 627 158 0 0 chr12 121105929 121106094 -151436 + (CAA)n Simple_repeat Simple_repeat 1 165 0 1 1508 3139 164 14 56 chr12 121106102 121106319 -151211 + Lx2B LINE L1 5237 5455 -422 1 1508 992 157 15 20 chr12 121106319 121106514 -151016 + B2_Mm2 SINE B2 2 195 0 1 1508 2651 94 28 12 chr12 121106518 121106917 -150613 + L1_Mus3 LINE L1 6225 6629 -9 1 1508 4350 173 62 23 chr12 121106917 121108289 -149241 + Lx2B LINE L1 5456 6988 -12 1 1508 5136 188 95 17 chr12 121108328 121108748 -148782 - RMER12 LTR ERVK -69 1253 759 1 1508 258 105 0 0 chr12 121108748 121108786 -148744 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 1 1508 5136 188 95 17 chr12 121108786 121109528 -148002 - RMER12 LTR ERVK -564 758 2 1 1508 359 235 0 64 chr12 121109539 121109625 -147905 + Lx4B LINE L1 6946 7030 -28 1 1508 3139 56 5 2 chr12 121109625 121110020 -147510 + MTA_Mm LTR MaLR 1 396 0 1 1508 359 235 0 64 chr12 121110020 121110042 -147488 + Lx4B LINE L1 7031 7047 -11 1 1508 504 129 45 8 chr12 121110236 121110369 -147161 + (TCTA)n Simple_repeat Simple_repeat 2 139 0 1 1509 21 71 0 0 chr12 121110800 121110842 -146688 + AT_rich Low_complexity Low_complexity 1 42 0 1 1509 234 399 58 29 chr12 121110974 121111147 -146383 + MLT1D LTR MaLR 183 360 -145 1 1509 317 313 118 18 chr12 121111366 121111535 -145995 - MIRb SINE MIR -32 236 51 1 1509 421 339 57 6 chr12 121111542 121111717 -145813 - MLT1D LTR MaLR -68 437 254 1 1509 376 332 105 76 chr12 121111899 121112275 -145255 - MER57D LTR ERV1 0 411 3 1 1509 247 299 122 10 chr12 121112304 121112402 -145128 - PB1D10 SINE Alu -7 110 2 1 1509 353 300 36 18 chr12 121112823 121112935 -144595 - MER20 DNA MER1_type -72 147 34 1 1509 2051 112 47 0 chr12 121113210 121113530 -144000 + Lx2 LINE L1 6662 6996 -1 1 1509 189 327 138 18 chr12 121113843 121113952 -143578 + MIRb SINE MIR 52 173 -95 1 1509 2633 167 45 18 chr12 121114029 121114657 -142873 - L1_Mur3 LINE L1 -2210 3670 3026 1 1509 826 290 85 10 chr12 121115961 121116765 -140765 - L1M2 LINE L1 -565 5726 4859 1 1509 28 48 0 0 chr12 121118151 121118193 -139337 + AT_rich Low_complexity Low_complexity 1 42 0 1 1509 206 211 0 0 chr12 121118934 121118972 -138558 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1509 280 307 145 72 chr12 121120043 121120250 -137280 + MLT1J LTR MaLR 252 473 -39 1 1509 207 383 96 8 chr12 121120322 121120572 -136958 + L2 LINE L2 2570 2841 -578 1 1509 2737 189 19 9 chr12 121120694 121121229 -136301 - Lx LINE L1 -6 6648 6109 1 1509 27 29 0 0 chr12 121121372 121121406 -136124 + AT_rich Low_complexity Low_complexity 1 34 0 1 1509 4076 173 59 8 chr12 121121856 121122600 -134930 + Lx5 LINE L1 6269 7050 0 1 1509 238 231 0 30 chr12 121123834 121123901 -133629 - L1MC3 LINE L1 -1393 6392 6328 1 1509 434 199 53 15 chr12 121124179 121124355 -133175 - L1MC3 LINE L1 -329 6015 5833 1 1509 465 272 21 35 chr12 121124368 121124509 -133021 + MLT2B2 LTR ERVL 7 145 -370 1 1509 1131 92 6 0 chr12 121124510 121124673 -132857 + L1_Mus2 LINE L1 6403 6566 0 1 1509 22 35 0 0 chr12 121124673 121124702 -132828 + AT_rich Low_complexity Low_complexity 1 29 0 1 1509 310 283 60 11 chr12 121124859 121125041 -132489 - L1MC3 LINE L1 -2340 5445 5255 1 1509 1175 246 82 29 chr12 121125242 121125656 -131874 + Lx9 LINE L1 5593 6028 -1616 1 1509 1701 228 69 13 chr12 121125754 121126132 -131398 + Lx9 LINE L1 6301 6699 -945 1 1509 517 278 129 34 chr12 121126211 121126540 -130990 - RMER20B LTR ERVK -54 462 96 1 1509 3705 191 132 13 chr12 121126650 121127492 -130038 + Lx9 LINE L1 6693 7634 -10 1 1509 614 120 10 10 chr12 121128144 121128245 -129285 - Lx2B LINE L1 -596 6404 6304 1 1509 356 104 12 94 chr12 121128240 121128325 -129205 + Lx LINE L1 6556 6633 -21 1 1509 870 149 0 0 chr12 121128325 121128473 -129057 + (GA)n Simple_repeat Simple_repeat 1 148 0 1 1509 360 64 0 0 chr12 121129322 121129369 -128161 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1509 1034 115 65 6 chr12 121129448 121129628 -127902 + BGLII_Mus LTR ERVK 1 177 -515 1 1509 544 286 23 6 chr12 121129632 121129808 -127722 + Lx7 LINE L1 7153 7331 -365 1 1509 405 0 0 0 chr12 121129887 121129932 -127598 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1509 1835 102 35 0 chr12 121130390 121130674 -126856 + BGLII_Mus LTR ERVK 127 420 -2 1 1509 397 333 17 17 chr12 121131005 121131124 -126406 - RSINE1 SINE B4 -42 123 5 1 1509 3261 135 38 4 chr12 121131297 121131804 -125726 + Lx3C LINE L1 6444 6967 -9 1 1509 252 86 0 0 chr12 121131852 121131887 -125643 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1509 272 333 102 42 chr12 121131940 121132106 -125424 + ORR1E LTR MaLR 19 194 -165 1 1509 309 93 0 51 chr12 121132652 121132731 -124799 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 1 1509 1011 60 75 0 chr12 121132751 121132884 -124646 - B1_Mm SINE Alu -4 143 1 1 1509 22 35 0 0 chr12 121133438 121133467 -124063 + AT_rich Low_complexity Low_complexity 1 29 0 1 1509 305 328 42 103 chr12 121133482 121133812 -123718 - Lx8 LINE L1 -35 7438 7129 1 1509 2322 321 24 7 chr12 121133819 121134584 -122946 - Lx8 LINE L1 -493 6980 6203 1 1509 420 238 24 16 chr12 121135172 121135296 -122234 + L1_Mus2 LINE L1 677 801 -5815 1 1509 31064 115 9 22 chr12 121135306 121138349 -119181 + L1_Mus2 LINE L1 725 3718 -2165 1 1509 3734 33 9 0 chr12 121138349 121138799 -118731 + L1Md_F2 LINE L1 6129 6582 0 1 1509 31064 93 8 3 chr12 121138799 121141628 -115902 + L1_Mus2 LINE L1 3719 6566 0 1 1509 2574 166 18 4 chr12 121141793 121142247 -115283 - Lx2B LINE L1 -42 5844 5385 1 1509 5884 181 29 18 chr12 121142251 121143417 -114113 + Lx2B LINE L1 5809 6987 -13 1 1509 297 269 29 58 chr12 121143661 121143799 -113731 - L1MA6 LINE L1 -17 6283 6150 1 1509 332 308 75 0 chr12 121144039 121144146 -113384 - LTR82B Low_complexity ERVL -591 239 125 1 1509 3889 163 53 1 chr12 121144200 121145089 -112441 + Lx3C LINE L1 5442 6358 -618 1 1509 1293 249 72 66 chr12 121145091 121145620 -111910 + L1VL2 LINE L1 22 487 -5848 1 1509 3920 138 42 36 chr12 121145606 121146362 -111168 + L1_Mur2 LINE L1 3065 3825 -2052 1 1509 2210 204 69 28 chr12 121146361 121146856 -110674 + Lx3C LINE L1 6459 6973 -3 1 1509 234 62 0 0 chr12 121146886 121146918 -110612 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1509 2142 194 45 36 chr12 121146921 121147414 -110116 + RLTR31A_Mm LTR ERVK 1 497 -87 1 1509 6783 86 51 10 chr12 121147506 121148489 -109041 + RLTR13D5 LTR ERVK 1 1023 0 1 1509 25 0 0 0 chr12 121149287 121149312 -108218 + AT_rich Low_complexity Low_complexity 1 25 0 1 1509 1519 264 60 8 chr12 121150044 121150429 -107101 - MTD LTR MaLR -14 405 1 1 1509 201 267 65 75 chr12 121150792 121150885 -106645 - L2c LINE L2 -3 3384 3293 1 1509 1937 160 262 7 chr12 121151233 121151668 -105862 + MT2B LTR ERVL 1 546 -55 1 1509 566 14 14 0 chr12 121151668 121151739 -105791 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 1 1509 8267 165 40 27 chr12 121151741 121153461 -104069 + MERVL_2A-int LTR ERVL 5 1824 -3937 1 1509 1323 167 58 15 chr12 121153560 121153821 -103709 - RMER6D LTR ERVK -353 367 96 1 1509 1151 116 39 39 chr12 121153813 121154020 -103510 + RMER6C LTR ERVK 484 690 0 1 1509 6438 170 84 54 chr12 121154021 121154385 -103145 + MERVL_2A-int LTR ERVL 4332 4694 -1067 1 1509 320 81 0 16 chr12 121154385 121154448 -103082 + L1Md_F3 LINE L1 6523 6584 0 1 1509 6438 170 84 54 chr12 121154448 121154592 -102938 + MERVL_2A-int LTR ERVL 4695 4851 -910 1 1509 199 219 0 0 chr12 121154592 121154624 -102906 + L3 LINE CR1 3920 3951 -538 1 1509 6438 170 84 54 chr12 121154624 121155359 -102171 + MERVL_2A-int LTR ERVL 4852 5655 -106 1 1509 306 0 0 0 chr12 121155359 121155393 -102137 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1509 270 0 0 0 chr12 121155393 121155422 -102108 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1509 6438 170 84 54 chr12 121155422 121155460 -102070 + MERVL_2A-int LTR ERVL 5656 5686 -75 1 1509 303 176 34 283 chr12 121155460 121155553 -101977 + ORR1A3-int LTR MaLR 558 591 -1372 1 1509 1091 211 131 72 chr12 121155553 121155933 -101597 + MT2B LTR ERVL 1 530 -71 2 1509 270 0 0 0 chr12 121155933 121155963 -101567 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1509 1091 205 141 29 chr12 121155963 121156026 -101504 + MT2B LTR ERVL 531 598 -3 2 1509 4096 118 45 20 chr12 121157123 121157808 -99722 - Lx2 LINE L1 0 6997 6296 2 1509 713 99 0 0 chr12 121157813 121157914 -99616 - 5S rRNA rRNA -20 101 1 2 1509 582 261 152 0 chr12 121157949 121158114 -99416 + B3 SINE B2 20 209 -7 2 1509 469 278 125 19 chr12 121158666 121159026 -98504 + L1MC LINE L1 3359 3756 -2390 2 1509 336 262 66 17 chr12 121159125 121159260 -98270 + L1ME3A LINE L1 5748 5892 -281 2 1509 225 308 0 0 chr12 121159376 121159441 -98089 + L1ME3A LINE L1 6052 6116 -57 2 1509 182 118 0 29 chr12 121159826 121159861 -97669 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1509 21 36 0 0 chr12 121160171 121160199 -97331 + AT_rich Low_complexity Low_complexity 1 28 0 2 1509 1402 259 49 42 chr12 121160318 121160914 -96616 - L1M3 LINE L1 -3405 2735 2136 2 1509 224 284 0 31 chr12 121161044 121161129 -96401 + A-rich Low_complexity Low_complexity 1 83 0 2 1509 432 0 0 0 chr12 121161129 121161177 -96353 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1509 224 284 0 31 chr12 121161177 121161189 -96341 + A-rich Low_complexity Low_complexity 84 95 0 2 1509 5327 275 45 23 chr12 121161201 121162586 -94944 - Lx7 LINE L1 -396 7300 5876 2 1509 1269 28 26 83 chr12 121162586 121162778 -94752 + L1Md_F3 LINE L1 6403 6583 -1 2 1509 5327 275 45 23 chr12 121162778 121163068 -94462 - Lx7 LINE L1 -1821 5875 5587 2 1509 3023 222 60 53 chr12 121163114 121163284 -94246 - Lx7 LINE L1 -1122 4758 4623 2 1509 234 0 0 0 chr12 121163284 121163310 -94220 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1509 3023 222 60 53 chr12 121163310 121164037 -93493 - Lx7 LINE L1 -1258 4622 3857 2 1509 405 0 0 0 chr12 121164037 121164082 -93448 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1509 3023 222 60 53 chr12 121164082 121164126 -93404 - Lx7 LINE L1 -2024 3856 3809 2 1509 698 110 34 8 chr12 121164253 121164372 -93158 - L1_Mur2 LINE L1 -1002 4875 4754 2 1509 340 126 0 22 chr12 121164403 121164468 -93062 - B2_Mm2 SINE B2 -107 109 48 2 1509 772 85 9 0 chr12 121164553 121164659 -92871 - B2_Mm1t SINE B2 -14 179 73 2 1509 10996 149 67 24 chr12 121164661 121166783 -90747 - L1_Mur2 LINE L1 -1606 4271 2061 2 1509 663 25 0 0 chr12 121166783 121166864 -90666 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1509 10996 149 67 24 chr12 121166864 121166964 -90566 - L1_Mur2 LINE L1 -3817 2060 1956 2 1509 1436 193 184 21 chr12 121166964 121167578 -89952 - L1_Mur2 LINE L1 -4329 1548 835 2 1509 4981 192 35 3 chr12 121167789 121169091 -88439 - L1_Mur3 LINE L1 -4233 1647 298 2 1509 889 20 0 0 chr12 121169530 121169630 -87900 + L1Md_T LINE L1 5486 5585 -298 2 1509 8263 34 3 1 chr12 121169633 121170624 -86906 + L1Md_T LINE L1 5589 6581 -1 2 1509 386 197 0 0 chr12 121170652 121170728 -86802 + Lx3B LINE L1 6897 6972 -1 2 1509 186 43 0 0 chr12 121170730 121170753 -86777 + (TAA)n Simple_repeat Simple_repeat 1 23 0 2 1509 2087 106 41 0 chr12 121170835 121171155 -86375 - Lx2 LINE L1 0 6997 6665 2 1509 3194 112 9 2 chr12 121171155 121171602 -85928 + Lx2 LINE L1 6226 6675 -322 2 1509 230 294 135 19 chr12 121171653 121171757 -85773 - Tigger15a DNA TcMar -256 459 344 2 1509 311 242 30 0 chr12 121171936 121172002 -85528 + ID4_ SINE ID 9 76 -7 2 1509 351 255 39 0 chr12 121172057 121172159 -85371 - U6 snRNA snRNA 0 107 2 2 1509 22 56 0 0 chr12 121173404 121173440 -84090 + AT_rich Low_complexity Low_complexity 1 36 0 2 1509 694 200 71 7 chr12 121173938 121174079 -83451 + B1_Mur4 SINE Alu 1 150 0 2 1509 338 302 81 55 chr12 121174143 121174381 -83149 - L1MEf LINE L1 -3512 2634 2392 2 1509 383 313 30 0 chr12 121174715 121174846 -82684 - MLT1F2 LTR MaLR -397 163 29 2 1509 303 319 13 77 chr12 121174998 121175154 -82376 - L1MEf LINE L1 -3987 2255 2110 2 1509 934 312 14 43 chr12 121175157 121175435 -82095 + B4A SINE B4 10 279 -13 2 1509 320 354 79 48 chr12 121175739 121176030 -81500 - L1MEf LINE L1 -5230 1012 713 2 1509 506 78 18 55 chr12 121176113 121176222 -81308 - L1Md_T LINE L1 -1 6581 6477 2 1509 433 52 0 0 chr12 121176222 121176280 -81250 + L1Md_F2 LINE L1 6015 6072 -510 2 1509 2241 108 6 6 chr12 121176280 121176615 -80915 + IAPLTR1a_Mm LTR ERVK 1 335 -2 2 1509 1223 53 0 0 chr12 121176615 121176766 -80764 + L1Md_F2 LINE L1 6068 6218 -364 2 1509 222 37 0 0 chr12 121177798 121177825 -79705 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2 1509 1746 37 5 0 chr12 121177978 121178193 -79337 - L1Md_T LINE L1 0 6582 6367 2 1509 361 338 59 54 chr12 121178839 121179061 -78469 - L1MEf LINE L1 -4852 1348 1126 2 1509 554 231 10 0 chr12 121179339 121179443 -78087 + MTD LTR MaLR 167 271 -148 2 1509 276 314 37 104 chr12 121179466 121179601 -77929 - MLT1A1 LTR MaLR -256 152 27 2 1509 800 132 13 19 chr12 121180338 121180493 -77037 + L1_Mus3 LINE L1 6484 6637 -1 2 1509 1630 213 68 22 chr12 121180527 121180897 -76633 - MTD LTR MaLR -17 402 16 2 1509 271 296 20 30 chr12 121180994 121181095 -76435 - MTEb LTR MaLR -2 377 278 2 1509 21 0 0 0 chr12 121181222 121181243 -76287 + AT_rich Low_complexity Low_complexity 1 21 0 2 1509 304 57 359 0 chr12 121181763 121181816 -75714 - B1_Mur4 SINE Alu -4 146 75 2 1509 1961 101 0 36 chr12 121181933 121182240 -75290 + L1Md_F2 LINE L1 6287 6582 0 2 1509 189 0 0 0 chr12 121185787 121185808 -71722 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 2 1509 333 0 0 0 chr12 121185911 121185948 -71582 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1509 752 0 0 11 chr12 121185948 121186037 -71493 + (TG)n Simple_repeat Simple_repeat 2 89 0 2 1509 21 0 0 0 chr12 121186566 121186587 -70943 + AT_rich Low_complexity Low_complexity 1 21 0 2 1509 198 333 18 0 chr12 121187520 121187577 -69953 + MIR SINE MIR 32 89 -173 2 1509 30 0 0 0 chr12 121188523 121188553 -68977 + AT_rich Low_complexity Low_complexity 1 30 0 2 1509 21 0 0 0 chr12 121188977 121188998 -68532 + AT_rich Low_complexity Low_complexity 1 21 0 2 1509 26 30 0 0 chr12 121189444 121189477 -68053 + AT_rich Low_complexity Low_complexity 1 33 0 2 1509 2962 161 78 13 chr12 121189828 121190377 -67153 + RMER4B LTR ERVK 1 585 0 2 1509 212 54 0 51 chr12 121191310 121191349 -66181 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 2 1509 22 0 0 0 chr12 121192933 121192955 -64575 + AT_rich Low_complexity Low_complexity 1 22 0 2 1509 1055 240 118 38 chr12 121193369 121193715 -63815 - ORR1D1 LTR MaLR 0 374 1 2 1509 574 143 27 0 chr12 121194123 121194235 -63295 + Lx4A LINE L1 6943 7057 -1 2 1509 36 23 0 0 chr12 121194240 121194283 -63247 + AT_rich Low_complexity Low_complexity 1 43 0 2 1509 596 50 12 0 chr12 121194302 121194382 -63148 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 2 1509 1872 102 24 3 chr12 121194406 121194700 -62830 + L1_Mur1 LINE L1 3461 3760 -2126 2 1509 327 25 0 0 chr12 121196909 121196949 -60581 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1509 1092 109 0 0 chr12 121197903 121198050 -59480 + B1_Mus1 SINE Alu 2 148 0 2 1509 491 45 15 0 chr12 121198052 121198118 -59412 + (GAAAA)n Simple_repeat Simple_repeat 2 68 0 2 1509 231 321 13 13 chr12 121198440 121198519 -59011 - B1_Mus2 SINE Alu -47 100 22 2 1509 812 204 28 17 chr12 121198519 121198698 -58832 - MTC LTR MaLR -19 402 222 2 1509 1638 230 86 5 chr12 121198691 121199085 -58445 - ORR1D-int LTR MaLR -944 426 1 2 1509 27 0 0 0 chr12 121199868 121199895 -57635 + AT_rich Low_complexity Low_complexity 1 27 0 2 1509 714 344 30 17 chr12 121200249 121200480 -57050 + B4 SINE B4 49 282 -10 2 1509 315 0 0 0 chr12 121200484 121200519 -57011 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1509 244 250 0 27 chr12 121200629 121200703 -56827 + CT-rich Low_complexity Low_complexity 1 72 0 2 1509 585 243 125 15 chr12 121200828 121201082 -56448 + MER33 DNA MER1_type 12 313 -11 2 1509 246 62 0 0 chr12 121201511 121201543 -55987 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1509 234 0 0 0 chr12 121201543 121201568 -55962 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1509 23 0 0 0 chr12 121202428 121202451 -55079 + AT_rich Low_complexity Low_complexity 1 23 0 2 1509 1788 152 44 19 chr12 121204533 121204854 -52676 + ORR1A4 LTR MaLR 1 329 0 2 1509 206 357 20 10 chr12 121205152 121205251 -52279 - L2c LINE L2 -44 3343 3244 2 1509 1032 179 15 25 chr12 121205345 121205546 -51984 - MTD LTR MaLR -8 411 213 2 1509 756 292 100 5 chr12 121205603 121205823 -51707 - MTD LTR MaLR -176 243 3 2 1509 323 167 14 0 chr12 121206524 121206596 -50934 - Lx2A LINE L1 -28 6980 6908 2 1509 195 42 0 0 chr12 121207152 121207176 -50354 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2 1509 1189 70 0 0 chr12 121207177 121207335 -50195 - B2_Mm2 SINE B2 -37 158 1 2 1509 21 57 0 0 chr12 121207767 121207802 -49728 + AT_rich Low_complexity Low_complexity 1 35 0 2 1509 204 326 7 102 chr12 121208159 121208306 -49224 + L3 LINE CR1 2050 2182 -2307 2 1509 357 257 92 7 chr12 121208312 121208465 -49065 - L1MA7 LINE L1 -2 6289 6124 2 1509 189 0 0 0 chr12 121208493 121208514 -49016 + (TAG)n Simple_repeat Simple_repeat 3 23 0 2 1509 8185 150 34 4 chr12 121208518 121210288 -47242 - Lx2B LINE L1 -18 6982 5169 2 1509 5773 129 17 29 chr12 121210288 121210702 -46828 + L1_Mur2 LINE L1 4159 4575 -1302 2 1509 1483 40 23 0 chr12 121210702 121210879 -46651 + B2_Mm1a SINE B2 5 185 -8 2 1509 5773 129 17 29 chr12 121210879 121211483 -46047 + L1_Mur2 LINE L1 4576 5164 -713 2 1509 1240 234 50 86 chr12 121212053 121212436 -45094 + ORR1D1 LTR MaLR 2 370 -4 2 1509 350 273 60 60 chr12 121212785 121212968 -44562 - L1MA6 LINE L1 -6 6294 6112 2 1509 1024 231 43 16 chr12 121213075 121213378 -44152 - L1MA6 LINE L1 -336 5964 5654 2 1509 1030 100 0 0 chr12 121213555 121213695 -43835 + B1_Mus1 SINE Alu 3 142 -6 2 1509 839 10 0 10 chr12 121213697 121213798 -43732 + (GAA)n Simple_repeat Simple_repeat 3 102 0 2 1509 21 0 0 0 chr12 121213798 121213819 -43711 + AT_rich Low_complexity Low_complexity 1 21 0 2 1509 487 296 0 9 chr12 121213885 121214001 -43529 + ID_B1 SINE B4 110 224 0 2 1509 257 0 0 29 chr12 121214001 121214035 -43495 + (CAAAAA)n Simple_repeat Simple_repeat 1 33 0 2 1509 1192 111 15 35 chr12 121214036 121214233 -43297 + B2_Mm2 SINE B2 2 194 -1 2 1509 7883 53 4 0 chr12 121214264 121215237 -42293 + L1_Mus2 LINE L1 5587 6563 -3 2 1509 799 192 11 0 chr12 121215249 121215426 -42104 + GA-rich Low_complexity Low_complexity 2 180 0 3 1509 28 29 0 0 chr12 121215453 121215488 -42042 + AT_rich Low_complexity Low_complexity 1 35 0 3 1509 28 29 0 0 chr12 121215565 121215600 -41930 + AT_rich Low_complexity Low_complexity 1 35 0 3 1509 269 278 100 31 chr12 121215748 121215878 -41652 - L1MEf LINE L1 -4622 1578 1440 3 1509 499 324 162 30 chr12 121216783 121217111 -40419 + MTE2a LTR MaLR 1 371 -8 3 1509 374 220 66 86 chr12 121217118 121217362 -40168 - L1M3f LINE L1 -4128 1978 1740 3 1509 947 246 5 14 chr12 121217373 121217591 -39939 + B3 SINE B2 1 216 0 3 1509 21 36 0 0 chr12 121217593 121217621 -39909 + AT_rich Low_complexity Low_complexity 1 28 0 3 1509 291 229 55 9 chr12 121218397 121218507 -39023 - L1M3f LINE L1 -4252 1854 1740 3 1509 289 358 80 44 chr12 121219114 121219365 -38165 - L1M3f LINE L1 -6686 344 85 3 1509 651 275 242 20 chr12 121221026 121221327 -36203 - ORR1D2 LTR MaLR -2 368 1 3 1509 257 380 66 33 chr12 121221854 121222096 -35434 - L3 LINE CR1 -32 4457 4208 3 1509 11093 78 6 33 chr12 121222641 121223627 -33903 - L1_Mus3 LINE L1 -1 6637 5681 3 1509 1584 43 0 0 chr12 121223627 121223815 -33715 + B2_Mm1a SINE B2 1 188 -5 3 1509 11093 103 23 11 chr12 121223815 121225246 -32284 - L1_Mus3 LINE L1 -203 5680 4214 3 1509 39088 32 0 0 chr12 121225241 121230653 -26877 - L1Md_T LINE L1 -1 6581 1170 3 1509 5556 157 24 31 chr12 121230659 121231774 -25756 - L1Md_T LINE L1 -5411 1205 99 3 1509 19764 100 17 2 chr12 121231793 121233749 -23781 - L1VL1 LINE L1 -1654 4229 2244 3 1509 216 0 0 0 chr12 121233749 121233773 -23757 + (TTAGGG)n Simple_repeat Simple_repeat 5 28 0 3 1509 19764 100 19 11 chr12 121233773 121235786 -21744 - L1VL1 LINE L1 -3640 2243 217 3 1509 5335 191 47 10 chr12 121237446 121238590 -18940 - Lx2B LINE L1 0 7000 5814 3 1509 1335 231 88 9 chr12 121240713 121241041 -16489 - MTD LTR MaLR 0 419 66 3 1509 276 286 43 43 chr12 121240960 121241077 -16453 - MT2A LTR ERVL -416 117 1 3 1509 2182 89 12 18 chr12 121241126 121241458 -16072 + L1_Mus3 LINE L1 6301 6630 -8 3 1509 180 0 0 0 chr12 121241461 121241481 -16049 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1510 960 285 123 43 chr12 121242793 121243167 -14363 + MTD LTR MaLR 1 404 -15 3 1510 323 365 118 47 chr12 121243369 121244079 -13451 - L1MC4a LINE L1 -1829 6053 5293 3 1510 371 273 70 98 chr12 121244670 121244981 -12549 - L1MC LINE L1 -672 5672 5370 3 1510 915 80 0 0 chr12 121244981 121245106 -12424 + (TTC)n Simple_repeat Simple_repeat 1 125 0 3 1510 338 273 70 98 chr12 121245106 121245151 -12379 - L1MC LINE L1 -975 5369 5326 3 1510 450 0 0 0 chr12 121245170 121245220 -12310 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1510 408 266 112 33 chr12 121245558 121245772 -11758 - Lx7 LINE L1 0 7696 7466 3 1510 195 336 8 124 chr12 121246444 121246573 -10957 - MER5B DNA MER1_type -2 176 63 3 1510 21 36 0 0 chr12 121247281 121247309 -10221 + AT_rich Low_complexity Low_complexity 1 28 0 3 1510 249 356 17 17 chr12 121247604 121247724 -9806 - L1MCc LINE L1 -5513 910 791 3 1510 189 74 0 0 chr12 121248757 121248784 -8746 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1510 620 282 8 0 chr12 121248784 121248915 -8615 - RSINE1 SINE B4 -30 135 4 3 1510 21 0 0 0 chr12 121251228 121251249 -6281 + AT_rich Low_complexity Low_complexity 1 21 0 3 1510 21 0 0 0 chr12 121255634 121255655 -1875 + AT_rich Low_complexity Low_complexity 1 21 0 3 1510 498 314 118 5 chr12 121255974 121256169 -1361 + ID_B1 SINE B4 1 217 -7 3 1510 361 357 49 14 chr12 121256394 121256536 -994 + B1F SINE Alu 2 148 -1 3